RPSBLAST 2.17.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: Pfam.v35
           19,638 sequences; 3,301,124 total letters



Query= TCONS_00000001

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.145    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0768    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00000002

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00000003

Length=249


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00000004

Length=355


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00000006

Length=340


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00006366

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00006367

Length=352


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00000005

Length=342


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00006368

Length=336


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00006369

Length=333


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00000007

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00000008

Length=335


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00006370

Length=336


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00000009

Length=355


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00000010

Length=272


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00000011

Length=495


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00000012

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00000013

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461417 pfam04749, PLAC8, PLAC8 family. This family includes t...  54.6    2e-11


>CDD:461417 pfam04749, PLAC8, PLAC8 family.  This family includes the Placenta-specific 
gene 8 protein.
Length=99

 Score = 54.6 bits (132),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 35/96 (36%), Gaps = 10/96 (10%)

Query  8   WQRGVCDCSSSCDVCLCATFTPCCLFNRIGTQFKGHDAQSCGWDCCMYFSVGCVLGLPCI  67
           W  G+ DC S C  CL     PC LF R   +       SC       F      GL  I
Sbjct  1   WSTGLFDCFSDCGTCLLGCCCPCVLFGRN-AERLDRGNTSCLLAGFAAFCGLTGCGLGWI  59

Query  68  PLGFRRYAIRNEYKIK---------AWCCSCCVLHQ  94
               +R  IR +Y I+           CC CC L Q
Sbjct  60  YSCLQRGKIREKYGIEGSPCGDCCVHCCCPCCALCQ  95



Lambda      K        H        a         alpha
   0.329    0.139    0.521    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00000014

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00000015

Length=417


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00000016

Length=716


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905104544


Query= TCONS_00006371

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00000017

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00000020

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00000018

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00000019

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00006372

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00000021

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00006373

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00006374

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00000022

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00000023

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00000024

Length=614


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 780091416


Query= TCONS_00000025

Length=212


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00000026

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00000027

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00000028

Length=355


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00006375

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase          95.0    2e-24


>CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase.  
Length=404

 Score = 95.0 bits (237),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 24/134 (18%)

Query  1    MNAIGVN---INYTQSNNDVYYAFQQTGDFVWPNFLEDLEEILKLPF-------------  44
              A+ VN     + + N+DV   F    D +  + +  +  +L+                
Sbjct  276  RKALHVNDSVGKWEECNDDV---FNWLYDDIMKSMIPIVPNLLEGGLRVLIYSGDVDLIC  332

Query  45   ---GGEAVSLAVNYTHTEQFRAAGYTPMVVDGVEYGETREYGNFSFTRVYQAGHEVPYYQ  101
               G EA   A+N++  + FR    +P  VDG   G  + YGN +F  V  AGH VP  Q
Sbjct  333  NYLGTEAWIKALNWSGKDDFRPWMVSP--VDGQVAGYVKTYGNLTFATVKGAGHMVPEDQ  390

Query  102  PVASLQLFNRTLFG  115
            P  +LQ+F R + G
Sbjct  391  PEEALQMFQRFISG  404



Lambda      K        H        a         alpha
   0.315    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00000029

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase          326     8e-108


>CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase.  
Length=404

 Score = 326 bits (837),  Expect = 8e-108, Method: Composition-based stats.
 Identities = 144/471 (31%), Positives = 196/471 (42%), Gaps = 96/471 (20%)

Query  55   PGKEGVCETTPGVKSYSGYVDISPE--SHTFFWFFEARHDPKNAPITLWLNGGPGSDSLI  112
            PG +G        K YSGYVD+        F+WFFE+R++P+  P+ LWLNGGPG  SL 
Sbjct  1    PGLDG----PLPFKQYSGYVDVGESEGRSLFYWFFESRNNPETDPLVLWLNGGPGCSSLG  56

Query  113  RLFEELGPCRINSTLDSTINPHSWTEVSNVLFLSQPLGVGFSYSEAEPGSLNPFTGVFEN  172
             LFEELGP R+N       NP+SW +V+N+LFL QP+GVGFSYS               N
Sbjct  57   GLFEELGPFRVNPGKTLYENPYSWNKVANILFLDQPVGVGFSYS---------------N  101

Query  173  ASSAGIQGQYPVIDATLIDTTDLATHAAWEILQGFMGGLPQLDHRIKLKDFSLWTESYGG  232
             SS                  D      +E LQ F    P+   R    DF +  ESY G
Sbjct  102  TSSDYKTN------------DDKTAKDNYEFLQKFFEKFPEYKSR----DFYIAGESYAG  145

Query  233  HYGPAFFNYFHEQNEKIANGTVEGIHLNFNSLGIINGIIDEGIQASYYPEFAVNNTYGIK  292
            HY PA      + N+  +        +N   L I NG+ D  IQ + Y  +A    Y   
Sbjct  146  HYVPALAQEILDGNKNGSK-----PKINLKGLAIGNGLTDPLIQVNSYVPYA----YYHG  196

Query  293  LVNDTVYNYMKFA-NQMPNSCQDQIGYCKQTNRTSLADYAICSEATNMCRDNVEGPYYAF  351
            L++D +Y  +K       +SC      C      +                        F
Sbjct  197  LISDELYESLKRQCCGKYDSCDQLNTKCANLVENASKCIVS------------------F  238

Query  352  GNRGVYDIRHP-------SKDPTPESYYVDYLKKDWVMNAIGVN---INYTQSNNDVYYA  401
            G    Y+I  P         DP   SY   YL +  V  A+ VN     + + N+DV   
Sbjct  239  GGINPYNIYTPCSTDTCGGYDPYDTSYAEKYLNRPEVRKALHVNDSVGKWEECNDDV---  295

Query  402  FQQTGDFVWPNFLEDLEEILKLPF----------------GGEAVSLAVNYTHTEQFRAA  445
            F    D +  + +  +  +L+                   G EA   A+N++  + FR  
Sbjct  296  FNWLYDDIMKSMIPIVPNLLEGGLRVLIYSGDVDLICNYLGTEAWIKALNWSGKDDFRPW  355

Query  446  GYTPMVVDGVEYGETREYGNFSFTRVYQAGHEVPYYQPVASLQLFNRTLFG  496
              +P  VDG   G  + YGN +F  V  AGH VP  QP  +LQ+F R + G
Sbjct  356  MVSP--VDGQVAGYVKTYGNLTFATVKGAGHMVPEDQPEEALQMFQRFISG  404



Lambda      K        H        a         alpha
   0.317    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00000030

Length=430
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family. This f...  67.9    5e-13


>CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family.  This family 
of enzymes are a a large metal dependent hydrolase superfamily. 
The family includes Adenine deaminase EC:3.5.4.2 that hydrolyzes 
adenine to form hypoxanthine and ammonia. Adenine deaminases 
reaction is important for adenine utilisation as a 
purine and also as a nitrogen source. This family also includes 
dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, 
EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 
6-phosphate + H2O <=> D-glucosamine 6-phosphate 
+ acetate. This family includes the catalytic domain 
of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are 
also included.
Length=334

 Score = 67.9 bits (166),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 130/378 (34%), Gaps = 73/378 (19%)

Query  63   ILAPGLIDVQLNGAQGFDFSVPQASKEEYNEGLRLVNKGLARTGVTSYLPTVVSSTPEVY  122
            I+ PGLID  ++   G    +P    E   E LRL    + ++G T+ L    +++  + 
Sbjct  1    IVLPGLIDAHVHLEMGLLRGIP-VPPEFAYEALRLGITTMLKSGTTTVLDMGATTSTGIE  59

Query  123  WKVLPSLGPSGSNHRPEDGAESLGAHVEGPFINLNRNGIHKTEVLRAAQNFEDLEECYGK  182
                                  LG    GP  +L+ +G             E  +    +
Sbjct  60   AL------------LEAAEELPLGLRFLGPGCSLDTDG-----------ELEGRKALR-E  95

Query  183  ENLTGSSKSVKMITVAPEVGNMVSTIPSLTSAGIVCSI--------------GHSDATFE  228
            +   G+     M      VG      P+ +   +  ++                +    E
Sbjct  96   KLKAGAEFIKGMADGVVFVGLAPHGAPTFSDDELKAALEEAKKYGLPVAIHALETKGEVE  155

Query  229  QALSATTAGATMVTHMFNAMRPFYHRNPGIFGLLGQSEHYRPFYSIIADGIHLHPTSIK-  287
             A++A   G    TH+  A                          I+A G+HL PT    
Sbjct  156  DAIAAFGGGIEHGTHLEVAESGG---------------LLDIIKLILAHGVHLSPTEANL  200

Query  288  IAYNAHPDGLVLVTDA-MKLCGLPDGVYDWMNGERIIKTGACLTLEGSD-KIAGSSATLI  345
            +A +    G+     +  KL          +   + ++ G  + L G+D   +G+S  ++
Sbjct  201  LAEHLKGAGVAHCPFSNSKLRS------GRIALRKALEDGVKVGL-GTDGAGSGNSLNML  253

Query  346  ECINNFRRWS-----GASIADAINAATATPARLLGLQGVKGSLDSGADADLVVLSEEDDP  400
            E +            G S  +A+  AT  PA+ LGL    GS++ G DADLVV+  +   
Sbjct  254  EELRLALELQFDPEGGLSPLEALRMATINPAKALGLDDKVGSIEVGKDADLVVVDLDPLA  313

Query  401  E----SPTLTVCQVWKRG  414
                  P   V +V  +G
Sbjct  314  AFFGLKPDGNVKKVIVKG  331



Lambda      K        H        a         alpha
   0.315    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0681    0.140     1.90     42.6     43.6 

Effective search space used: 521459360


Query= TCONS_00000031

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  525     0.0  


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 525 bits (1355),  Expect = 0.0, Method: Composition-based stats.
 Identities = 212/466 (45%), Positives = 281/466 (60%), Gaps = 12/466 (3%)

Query  20   ASSGRTFRTINPANNTPLAEIHVASNSDTDAAIAAADRAFPLWSQTPHITRARILQKAAA  79
             S   T   INPA    +A +  A+  D DAAIAAA  AFP W +TP   RA IL+KAA 
Sbjct  3    DSESETIEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRKAAD  62

Query  80   LLRERNDELARLKTLDSGKAYSETSTVNIVTSADVLEYYANLVGGGGLNGETTQLREDAW  139
            LL ER DELA L+TL++GK  +E     +  + DVL YYA L        ET        
Sbjct  63   LLEERKDELAELETLENGKPLAEARG-EVDRAIDVLRYYAGLARRLDG--ETLPSDPGRL  119

Query  140  VFTKKAPLGVCVGISAWNYPLQIALWKSAPCLTAGNTMVYKPSEYTPLHAQMLAEIYREA  199
             +T++ PLGV   I+ WN+PL +  WK AP L AGNT+V KPSE TPL A +LAE++ EA
Sbjct  120  AYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEA  179

Query  200  GLPPGVFNVVYGAG-DVGAYLTAHPLVAKVSFTGQVSTGMKVAGSAAGQMKYVTMELGGK  258
            GLP GV NVV G+G +VG  L  HP V KVSFTG  + G  +A +AA  +K VT+ELGGK
Sbjct  180  GLPAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGK  239

Query  259  SPLLILPDADLENAVNGAMMANFFSTGQVCTNGTQVFVPRGMKSAFKKALLDKMQYIRPG  318
            +PL++L DADL+ AV  A+   F + GQVCT  +++ V   +   F + L++  + ++ G
Sbjct  240  NPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKLKVG  299

Query  319  PLFDNATNFGPLSSALHLEKVTSYIRHGIETDKATLLYGGLGKPSLPKDLENGFWVRPTV  378
               D  T+ GPL S   LE+V  Y+    E + A LL GG         L+NG++V PTV
Sbjct  300  DPLDPDTDMGPLISKAQLERVLKYVEDAKE-EGAKLLTGG------EAGLDNGYFVEPTV  352

Query  379  FTDCTDSMRIVQEEIFGPVMSILYYDTVEEAVRRANNTELGLAAGVFTRDLNMAHRIIDQ  438
              + T  MRI QEEIFGPV+S++ +   EEA+  AN+TE GLAAGVFT DL  A R+  +
Sbjct  353  LANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARR  412

Query  439  LQAGITWINSWGESPAEMA-VGGWKKSGVGVENGRRGIEAWVRNKS  483
            L+AG+ WIN +    A+    GG+K+SG G E G  G+E +   K+
Sbjct  413  LEAGMVWINDYTTGDADGLPFGGFKQSGFGREGGPYGLEEYTEVKT  458



Lambda      K        H        a         alpha
   0.318    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 617738928


Query= TCONS_00000032

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425518 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyl...  270     2e-89
CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. Thi...  58.0    2e-11
CDD:460710 pfam02817, E3_binding, e3 binding domain. This family ...  56.5    2e-11


>CDD:425518 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase 
(catalytic domain).  These proteins contain one to three 
copies of a lipoyl binding domain followed by the catalytic 
domain.
Length=212

 Score = 270 bits (692),  Expect = 2e-89, Method: Composition-based stats.
 Identities = 92/216 (43%), Positives = 141/216 (65%), Gaps = 6/216 (3%)

Query  259  MTRSLN-IPHFLFADELNINNITALRKKLANDPKDPR-RITFLSFVIKAVSLALNEYPIL  316
            MT S   IPHF   DE+++  + ALR++L  D  D   ++TFL F++KAV+LAL ++P L
Sbjct  1    MTESKQTIPHFTLTDEVDVTELLALREELKEDAADEETKLTFLPFLVKAVALALKKFPEL  60

Query  317  NAKVDTSNPDKPQLIMRPRHNIGVAMDTPQGLIVPNVKDVANRSIEDVAAEISRLSALGK  376
            NA  D    ++ +++ +   NIG+A+ TP+GLIVP +++   +SI ++A EI  L+   +
Sbjct  61   NASWD---GEEGEIVYKKYVNIGIAVATPRGLIVPVIRNADRKSILEIAKEIKDLAERAR  117

Query  377  EGKLTPADLSGGTITVSNIGNIGGTYVAPVIVSNEVAILGVGKSKTVPIFDEAGQVTKGE  436
            EGKL P DL GGT T+SN+G  G T+  P+I   +VAILGVG+ +  P+    G++   +
Sbjct  118  EGKLKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGRIRKRPVV-VDGEIVVRK  176

Query  437  LVNFSWSADHRVVDGATMARMANKVRECIESPELML  472
            ++  S S DHRV+DGA  AR  N ++E +E+PEL+L
Sbjct  177  VMPLSLSFDHRVIDGAEAARFLNTLKELLENPELLL  212


>CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme.  This family 
covers two Prosite entries, the conserved lysine residue 
binds biotin in one group and lipoic acid in the other. Note 
that the HMM does not currently recognize the Glycine cleavage 
system H proteins.
Length=73

 Score = 58.0 bits (141),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 19/68 (28%), Positives = 36/68 (53%), Gaps = 1/68 (1%)

Query  55   DVGEGITEVQIIQWYVEEGAHIEEWKPLCQYQSDKAVDDITSRYEGIVKKLHFQADDTVP  114
             +GE + E  +++W V+ G  ++  +PL + ++ K   +I +   G+VK++     DTV 
Sbjct  7    MIGESVREG-VVEWLVKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPEGDTVE  65

Query  115  TGRALCDI  122
             G  L  I
Sbjct  66   VGDPLAKI  73


>CDD:460710 pfam02817, E3_binding, e3 binding domain.  This family represents 
a small domain of the E2 subunit of 2-oxo-acid dehydrogenases 
responsible for the binding of the E3 subunit.
Length=36

 Score = 56.5 bits (138),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 15/35 (43%), Positives = 23/35 (66%), Gaps = 0/35 (0%)

Query  180  LATPAVRGMLKAHNVNILDIPGTGKDGRVLKEDVL  214
            LA+PA R + +   +++ D+ GTG  GR+ KEDV 
Sbjct  2    LASPAARKLARELGIDLSDVKGTGPGGRITKEDVE  36



Lambda      K        H        a         alpha
   0.315    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00000033

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  141     1e-40
CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  135     4e-37


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 141 bits (358),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 48/139 (35%), Positives = 70/139 (50%), Gaps = 3/139 (2%)

Query  163  SVVVCPSTTKEVSRVMEVCHRRRLPVTAYAGGTSLEGHFAPTRGGVCIDFQGMDQILTVH  222
            + VV P + +EV+ ++ + +   LPV    GG+SL G  A   GG+ +D   ++ IL + 
Sbjct  2    AAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGG-AVQTGGIVLDLSRLNGILEID  60

Query  223  KDDLDVVVQPAVQWEVLNEELAKDGLFFPPDPGPG--AMIGGMVGTGCSGTNAYHYGTMR  280
             +D    V+  V    L   LA  GL    DPG G    +GG + T   G  +  YG  R
Sbjct  61   PEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLTR  120

Query  281  DWVLSLTVVLADGTIIKTR  299
            D VL L VVLADG +++  
Sbjct  121  DNVLGLEVVLADGEVVRLG  139


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 135 bits (342),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 54/171 (32%), Positives = 83/171 (49%), Gaps = 4/171 (2%)

Query  335  KPMNEAVAVASFPSVRDAASCVSEVVKKGVNIAAVELLDDVQMKCINTSQTTSRSW--DE  392
             P   AVA+  FPS   A   V E+ + G+  AA+EL+D+  +  +  +    +    D 
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARAGIIPAALELMDNDALDLVEATLGFPKGLPRDA  60

Query  393  APTLFFKFSGAPGEV-KEKIAIVQELAENANKKTFTFARDSEEVDELWSARKVALWSILQ  451
            A  L  +F G   E  +E++  V+ + E         A D  E + LW+ARK AL  +  
Sbjct  61   AALLLVEFEGDDEETAEEELEAVEAILEAGGAGDVVVATDEAEAERLWAARKYALP-LRD  119

Query  452  MKQQPTDHVWTTDVAVPMSRLPDIIEQTREEISASGLLGGIVGHVGDGNFH  502
                    V++ DV+VP SRL D++   +E +   GL+  + GH GDGN H
Sbjct  120  ALGGAGPAVFSEDVSVPRSRLADLVRDIKELLDKYGLVVCLFGHAGDGNLH  170



Lambda      K        H        a         alpha
   0.316    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00006377

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  211     8e-65
CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  141     2e-40


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 211 bits (538),  Expect = 8e-65, Method: Composition-based stats.
 Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 7/249 (3%)

Query  335  KPMNEAVAVASFPSVRDAASCVSEVVKKGVNIAAVELLDDVQMKCINTSQTTSRSW--DE  392
             P   AVA+  FPS   A   V E+ + G+  AA+EL+D+  +  +  +    +    D 
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARAGIIPAALELMDNDALDLVEATLGFPKGLPRDA  60

Query  393  APTLFFKFSGAPGEV-KEKIAIVQELAENANKKTFTFARDSEEVDELWSARKVALWSILQ  451
            A  L  +F G   E  +E++  V+ + E         A D  E + LW+ARK AL  +  
Sbjct  61   AALLLVEFEGDDEETAEEELEAVEAILEAGGAGDVVVATDEAEAERLWAARKYALP-LRD  119

Query  452  MKQQPTDHVWTTDVAVPMSRLPDIIEQTREEISASGLLGGIVGHVGDGNFHAMLLF---N  508
                    V++ DV+VP SRL D++   +E +   GL+  + GH GDGN H  +LF   +
Sbjct  120  ALGGAGPAVFSEDVSVPRSRLADLVRDIKELLDKYGLVVCLFGHAGDGNLHLYILFDFRD  179

Query  509  DDQRQVAESVVHNMVKRAVEMEGTVTGEHGVGMVKRDYLEHEVGKTTVDTMRRFKQALDP  568
             +Q + AE +   ++  A+E+ G+++GEHGVG  K+ YLE E G+  +  MRR K A DP
Sbjct  180  PEQEERAEKLFDEIMDLALELGGSISGEHGVGRDKKPYLEREFGEEGLALMRRIKAAFDP  239

Query  569  LCLLNCDKV  577
              +LN  KV
Sbjct  240  KGILNPGKV  248


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 141 bits (359),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 48/139 (35%), Positives = 70/139 (50%), Gaps = 3/139 (2%)

Query  163  SVVVCPSTTKEVSRVMEVCHRRRLPVTAYAGGTSLEGHFAPTRGGVCIDFQGMDQILTVH  222
            + VV P + +EV+ ++ + +   LPV    GG+SL G  A   GG+ +D   ++ IL + 
Sbjct  2    AAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGG-AVQTGGIVLDLSRLNGILEID  60

Query  223  KDDLDVVVQPAVQWEVLNEELAKDGLFFPPDPGPG--AMIGGMVGTGCSGTNAYHYGTMR  280
             +D    V+  V    L   LA  GL    DPG G    +GG + T   G  +  YG  R
Sbjct  61   PEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLTR  120

Query  281  DWVLSLTVVLADGTIIKTR  299
            D VL L VVLADG +++  
Sbjct  121  DNVLGLEVVLADGEVVRLG  139



Lambda      K        H        a         alpha
   0.316    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 745719572


Query= TCONS_00006378

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  133     1e-37
CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  123     2e-35


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 133 bits (336),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 54/171 (32%), Positives = 83/171 (49%), Gaps = 4/171 (2%)

Query  158  KPMNEAVAVASFPSVRDAASCVSEVVKKGVNIAAVELLDDVQMKCINTSQTTSRSW--DE  215
             P   AVA+  FPS   A   V E+ + G+  AA+EL+D+  +  +  +    +    D 
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARAGIIPAALELMDNDALDLVEATLGFPKGLPRDA  60

Query  216  APTLFFKFSGAPGEV-KEKIAIVQELAENANKKTFTFARDSEEVDELWSARKVALWSILQ  274
            A  L  +F G   E  +E++  V+ + E         A D  E + LW+ARK AL  +  
Sbjct  61   AALLLVEFEGDDEETAEEELEAVEAILEAGGAGDVVVATDEAEAERLWAARKYALP-LRD  119

Query  275  MKQQPTDHVWTTDVAVPMSRLPDIIEQTREEISASGLLGGIVGHVGDGNFH  325
                    V++ DV+VP SRL D++   +E +   GL+  + GH GDGN H
Sbjct  120  ALGGAGPAVFSEDVSVPRSRLADLVRDIKELLDKYGLVVCLFGHAGDGNLH  170


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 123 bits (312),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 43/124 (35%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query  1    MEVCHRRRLPVTAYAGGTSLEGHFAPTRGGVCIDFQGMDQILTVHKDDLDVVVQPAVQWE  60
            + + +   LPV    GG+SL G  A   GG+ +D   ++ IL +  +D    V+  V   
Sbjct  17   VRLANENGLPVLPRGGGSSLLGG-AVQTGGIVLDLSRLNGILEIDPEDGTATVEAGVTLG  75

Query  61   VLNEELAKDGLFFPPDPGPG--AMIGGMVGTGCSGTNAYHYGTMRDWVLSLTVVLADGTI  118
             L   LA  GL    DPG G    +GG + T   G  +  YG  RD VL L VVLADG +
Sbjct  76   DLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLTRDNVLGLEVVLADGEV  135

Query  119  IKTR  122
            ++  
Sbjct  136  VRLG  139



Lambda      K        H        a         alpha
   0.318    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00000034

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  211     8e-65
CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  141     2e-40


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 211 bits (538),  Expect = 8e-65, Method: Composition-based stats.
 Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 7/249 (3%)

Query  335  KPMNEAVAVASFPSVRDAASCVSEVVKKGVNIAAVELLDDVQMKCINTSQTTSRSW--DE  392
             P   AVA+  FPS   A   V E+ + G+  AA+EL+D+  +  +  +    +    D 
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARAGIIPAALELMDNDALDLVEATLGFPKGLPRDA  60

Query  393  APTLFFKFSGAPGEV-KEKIAIVQELAENANKKTFTFARDSEEVDELWSARKVALWSILQ  451
            A  L  +F G   E  +E++  V+ + E         A D  E + LW+ARK AL  +  
Sbjct  61   AALLLVEFEGDDEETAEEELEAVEAILEAGGAGDVVVATDEAEAERLWAARKYALP-LRD  119

Query  452  MKQQPTDHVWTTDVAVPMSRLPDIIEQTREEISASGLLGGIVGHVGDGNFHAMLLF---N  508
                    V++ DV+VP SRL D++   +E +   GL+  + GH GDGN H  +LF   +
Sbjct  120  ALGGAGPAVFSEDVSVPRSRLADLVRDIKELLDKYGLVVCLFGHAGDGNLHLYILFDFRD  179

Query  509  DDQRQVAESVVHNMVKRAVEMEGTVTGEHGVGMVKRDYLEHEVGKTTVDTMRRFKQALDP  568
             +Q + AE +   ++  A+E+ G+++GEHGVG  K+ YLE E G+  +  MRR K A DP
Sbjct  180  PEQEERAEKLFDEIMDLALELGGSISGEHGVGRDKKPYLEREFGEEGLALMRRIKAAFDP  239

Query  569  LCLLNCDKV  577
              +LN  KV
Sbjct  240  KGILNPGKV  248


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 141 bits (359),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 48/139 (35%), Positives = 70/139 (50%), Gaps = 3/139 (2%)

Query  163  SVVVCPSTTKEVSRVMEVCHRRRLPVTAYAGGTSLEGHFAPTRGGVCIDFQGMDQILTVH  222
            + VV P + +EV+ ++ + +   LPV    GG+SL G  A   GG+ +D   ++ IL + 
Sbjct  2    AAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGG-AVQTGGIVLDLSRLNGILEID  60

Query  223  KDDLDVVVQPAVQWEVLNEELAKDGLFFPPDPGPG--AMIGGMVGTGCSGTNAYHYGTMR  280
             +D    V+  V    L   LA  GL    DPG G    +GG + T   G  +  YG  R
Sbjct  61   PEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLTR  120

Query  281  DWVLSLTVVLADGTIIKTR  299
            D VL L VVLADG +++  
Sbjct  121  DNVLGLEVVLADGEVVRLG  139



Lambda      K        H        a         alpha
   0.316    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 745719572


Query= TCONS_00006379

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  211     8e-65
CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  141     2e-40


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 211 bits (538),  Expect = 8e-65, Method: Composition-based stats.
 Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 7/249 (3%)

Query  335  KPMNEAVAVASFPSVRDAASCVSEVVKKGVNIAAVELLDDVQMKCINTSQTTSRSW--DE  392
             P   AVA+  FPS   A   V E+ + G+  AA+EL+D+  +  +  +    +    D 
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARAGIIPAALELMDNDALDLVEATLGFPKGLPRDA  60

Query  393  APTLFFKFSGAPGEV-KEKIAIVQELAENANKKTFTFARDSEEVDELWSARKVALWSILQ  451
            A  L  +F G   E  +E++  V+ + E         A D  E + LW+ARK AL  +  
Sbjct  61   AALLLVEFEGDDEETAEEELEAVEAILEAGGAGDVVVATDEAEAERLWAARKYALP-LRD  119

Query  452  MKQQPTDHVWTTDVAVPMSRLPDIIEQTREEISASGLLGGIVGHVGDGNFHAMLLF---N  508
                    V++ DV+VP SRL D++   +E +   GL+  + GH GDGN H  +LF   +
Sbjct  120  ALGGAGPAVFSEDVSVPRSRLADLVRDIKELLDKYGLVVCLFGHAGDGNLHLYILFDFRD  179

Query  509  DDQRQVAESVVHNMVKRAVEMEGTVTGEHGVGMVKRDYLEHEVGKTTVDTMRRFKQALDP  568
             +Q + AE +   ++  A+E+ G+++GEHGVG  K+ YLE E G+  +  MRR K A DP
Sbjct  180  PEQEERAEKLFDEIMDLALELGGSISGEHGVGRDKKPYLEREFGEEGLALMRRIKAAFDP  239

Query  569  LCLLNCDKV  577
              +LN  KV
Sbjct  240  KGILNPGKV  248


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 141 bits (359),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 48/139 (35%), Positives = 70/139 (50%), Gaps = 3/139 (2%)

Query  163  SVVVCPSTTKEVSRVMEVCHRRRLPVTAYAGGTSLEGHFAPTRGGVCIDFQGMDQILTVH  222
            + VV P + +EV+ ++ + +   LPV    GG+SL G  A   GG+ +D   ++ IL + 
Sbjct  2    AAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGG-AVQTGGIVLDLSRLNGILEID  60

Query  223  KDDLDVVVQPAVQWEVLNEELAKDGLFFPPDPGPG--AMIGGMVGTGCSGTNAYHYGTMR  280
             +D    V+  V    L   LA  GL    DPG G    +GG + T   G  +  YG  R
Sbjct  61   PEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLTR  120

Query  281  DWVLSLTVVLADGTIIKTR  299
            D VL L VVLADG +++  
Sbjct  121  DNVLGLEVVLADGEVVRLG  139



Lambda      K        H        a         alpha
   0.316    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 745719572


Query= TCONS_00000035

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  141     1e-40
CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  135     4e-37


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 141 bits (358),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 48/139 (35%), Positives = 70/139 (50%), Gaps = 3/139 (2%)

Query  163  SVVVCPSTTKEVSRVMEVCHRRRLPVTAYAGGTSLEGHFAPTRGGVCIDFQGMDQILTVH  222
            + VV P + +EV+ ++ + +   LPV    GG+SL G  A   GG+ +D   ++ IL + 
Sbjct  2    AAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGG-AVQTGGIVLDLSRLNGILEID  60

Query  223  KDDLDVVVQPAVQWEVLNEELAKDGLFFPPDPGPG--AMIGGMVGTGCSGTNAYHYGTMR  280
             +D    V+  V    L   LA  GL    DPG G    +GG + T   G  +  YG  R
Sbjct  61   PEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLTR  120

Query  281  DWVLSLTVVLADGTIIKTR  299
            D VL L VVLADG +++  
Sbjct  121  DNVLGLEVVLADGEVVRLG  139


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 135 bits (342),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 54/171 (32%), Positives = 83/171 (49%), Gaps = 4/171 (2%)

Query  335  KPMNEAVAVASFPSVRDAASCVSEVVKKGVNIAAVELLDDVQMKCINTSQTTSRSW--DE  392
             P   AVA+  FPS   A   V E+ + G+  AA+EL+D+  +  +  +    +    D 
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARAGIIPAALELMDNDALDLVEATLGFPKGLPRDA  60

Query  393  APTLFFKFSGAPGEV-KEKIAIVQELAENANKKTFTFARDSEEVDELWSARKVALWSILQ  451
            A  L  +F G   E  +E++  V+ + E         A D  E + LW+ARK AL  +  
Sbjct  61   AALLLVEFEGDDEETAEEELEAVEAILEAGGAGDVVVATDEAEAERLWAARKYALP-LRD  119

Query  452  MKQQPTDHVWTTDVAVPMSRLPDIIEQTREEISASGLLGGIVGHVGDGNFH  502
                    V++ DV+VP SRL D++   +E +   GL+  + GH GDGN H
Sbjct  120  ALGGAGPAVFSEDVSVPRSRLADLVRDIKELLDKYGLVVCLFGHAGDGNLH  170



Lambda      K        H        a         alpha
   0.316    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00000036

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  141     1e-40
CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  135     4e-37


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 141 bits (358),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 48/139 (35%), Positives = 70/139 (50%), Gaps = 3/139 (2%)

Query  163  SVVVCPSTTKEVSRVMEVCHRRRLPVTAYAGGTSLEGHFAPTRGGVCIDFQGMDQILTVH  222
            + VV P + +EV+ ++ + +   LPV    GG+SL G  A   GG+ +D   ++ IL + 
Sbjct  2    AAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGG-AVQTGGIVLDLSRLNGILEID  60

Query  223  KDDLDVVVQPAVQWEVLNEELAKDGLFFPPDPGPG--AMIGGMVGTGCSGTNAYHYGTMR  280
             +D    V+  V    L   LA  GL    DPG G    +GG + T   G  +  YG  R
Sbjct  61   PEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLTR  120

Query  281  DWVLSLTVVLADGTIIKTR  299
            D VL L VVLADG +++  
Sbjct  121  DNVLGLEVVLADGEVVRLG  139


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 135 bits (342),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 54/171 (32%), Positives = 83/171 (49%), Gaps = 4/171 (2%)

Query  335  KPMNEAVAVASFPSVRDAASCVSEVVKKGVNIAAVELLDDVQMKCINTSQTTSRSW--DE  392
             P   AVA+  FPS   A   V E+ + G+  AA+EL+D+  +  +  +    +    D 
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARAGIIPAALELMDNDALDLVEATLGFPKGLPRDA  60

Query  393  APTLFFKFSGAPGEV-KEKIAIVQELAENANKKTFTFARDSEEVDELWSARKVALWSILQ  451
            A  L  +F G   E  +E++  V+ + E         A D  E + LW+ARK AL  +  
Sbjct  61   AALLLVEFEGDDEETAEEELEAVEAILEAGGAGDVVVATDEAEAERLWAARKYALP-LRD  119

Query  452  MKQQPTDHVWTTDVAVPMSRLPDIIEQTREEISASGLLGGIVGHVGDGNFH  502
                    V++ DV+VP SRL D++   +E +   GL+  + GH GDGN H
Sbjct  120  ALGGAGPAVFSEDVSVPRSRLADLVRDIKELLDKYGLVVCLFGHAGDGNLH  170



Lambda      K        H        a         alpha
   0.316    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00000037

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  210     7e-65
CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  141     1e-40


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 210 bits (537),  Expect = 7e-65, Method: Composition-based stats.
 Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 7/249 (3%)

Query  323  KPMNEAVAVASFPSVRDAASCVSEVVKKGVNIAAVELLDDVQMKCINTSQTTSRSW--DE  380
             P   AVA+  FPS   A   V E+ + G+  AA+EL+D+  +  +  +    +    D 
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARAGIIPAALELMDNDALDLVEATLGFPKGLPRDA  60

Query  381  APTLFFKFSGAPGEV-KEKIAIVQELAENANKKTFTFARDSEEVDELWSARKVALWSILQ  439
            A  L  +F G   E  +E++  V+ + E         A D  E + LW+ARK AL  +  
Sbjct  61   AALLLVEFEGDDEETAEEELEAVEAILEAGGAGDVVVATDEAEAERLWAARKYALP-LRD  119

Query  440  MKQQPTDHVWTTDVAVPMSRLPDIIEQTREEISASGLLGGIVGHVGDGNFHAMLLF---N  496
                    V++ DV+VP SRL D++   +E +   GL+  + GH GDGN H  +LF   +
Sbjct  120  ALGGAGPAVFSEDVSVPRSRLADLVRDIKELLDKYGLVVCLFGHAGDGNLHLYILFDFRD  179

Query  497  DDQRQVAESVVHNMVKRAVEMEGTVTGEHGVGMVKRDYLEHEVGKTTVDTMRRFKQALDP  556
             +Q + AE +   ++  A+E+ G+++GEHGVG  K+ YLE E G+  +  MRR K A DP
Sbjct  180  PEQEERAEKLFDEIMDLALELGGSISGEHGVGRDKKPYLEREFGEEGLALMRRIKAAFDP  239

Query  557  LCLLNCDKV  565
              +LN  KV
Sbjct  240  KGILNPGKV  248


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 141 bits (359),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 48/139 (35%), Positives = 70/139 (50%), Gaps = 3/139 (2%)

Query  151  SVVVCPSTTKEVSRVMEVCHRRRLPVTAYAGGTSLEGHFAPTRGGVCIDFQGMDQILTVH  210
            + VV P + +EV+ ++ + +   LPV    GG+SL G  A   GG+ +D   ++ IL + 
Sbjct  2    AAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGG-AVQTGGIVLDLSRLNGILEID  60

Query  211  KDDLDVVVQPAVQWEVLNEELAKDGLFFPPDPGPG--AMIGGMVGTGCSGTNAYHYGTMR  268
             +D    V+  V    L   LA  GL    DPG G    +GG + T   G  +  YG  R
Sbjct  61   PEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLTR  120

Query  269  DWVLSLTVVLADGTIIKTR  287
            D VL L VVLADG +++  
Sbjct  121  DNVLGLEVVLADGEVVRLG  139



Lambda      K        H        a         alpha
   0.316    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 727786436


Query= TCONS_00000039

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  107     2e-30


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 107 bits (269),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 41/121 (34%), Positives = 63/121 (52%), Gaps = 21/121 (17%)

Query  9    VWTTDVAVPMSRLPDIIEQTREEISASGLLGGIVGHVAESVVH-----------------  51
            V++ DV+VP SRL D++   +E +   GL+  + GH  +  +H                 
Sbjct  128  VFSEDVSVPRSRLADLVRDIKELLDKYGLVVCLFGHAGDGNLHLYILFDFRDPEQEERAE  187

Query  52   ----NMVKRAVEMEGTVTGEHGVGMVKRDYLEHEVGKTTVDTMRRFKQALDPLCLLNCDK  107
                 ++  A+E+ G+++GEHGVG  K+ YLE E G+  +  MRR K A DP  +LN  K
Sbjct  188  KLFDEIMDLALELGGSISGEHGVGRDKKPYLEREFGEEGLALMRRIKAAFDPKGILNPGK  247

Query  108  V  108
            V
Sbjct  248  V  248



Lambda      K        H        a         alpha
   0.317    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00006380

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  158     1e-45


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 158 bits (402),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 123/233 (53%), Gaps = 10/233 (4%)

Query  1    MGIAATGSKSLAYNVAYATAQELKAVGVNWILGPVLDVLTNVRTQPLGVRTTGDDPQEVS  60
            + +AAT    LA  + +A A+E++A+G++W   PV+DV  + R   +G R+  +DPQ VS
Sbjct  92   IALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVDVARDPR-WGIGERSFSEDPQLVS  150

Query  61   QYGVEFMKGYKKAGLVTCGKHFPSYGNLEFLGSQTDIPIITESLEQLSLTALVPFRNAIV  120
                  ++G + AG++   KHFP +G+     S  + P      ++L    L+PF+ AI 
Sbjct  151  ALAGAMIEGLQGAGVLATVKHFPGHGHGATD-SHKETPTTPRPEQRLRTVDLLPFQAAIE  209

Query  121  HGLDSMMVGGVSMSSAGVNVMHACLSEQVVNDLLRKDLKFNGVVVSECLEMEALTHNISV  180
             G+D++M   V  SS  ++   A  S+ ++ D+LRK   F+G+VVS+ L M+ +  +   
Sbjct  210  AGVDAVMAAHVIYSS--LDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMKGIADHGGP  267

Query  181  GGGTVMAKNAGCDIILLCRSFPVQQEAINGLKLGVENSIIGRARIEQSLRRVL  233
                  A  AG DI L+             LK  V+N  +  ARI+ ++RRVL
Sbjct  268  AEAVRRALEAGVDIALVPEER------TKYLKKVVKNGKLPMARIDAAVRRVL  314



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00000047

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  158     1e-45


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 158 bits (402),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 123/233 (53%), Gaps = 10/233 (4%)

Query  1    MGIAATGSKSLAYNVAYATAQELKAVGVNWILGPVLDVLTNVRTQPLGVRTTGDDPQEVS  60
            + +AAT    LA  + +A A+E++A+G++W   PV+DV  + R   +G R+  +DPQ VS
Sbjct  92   IALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVDVARDPR-WGIGERSFSEDPQLVS  150

Query  61   QYGVEFMKGYKKAGLVTCGKHFPSYGNLEFLGSQTDIPIITESLEQLSLTALVPFRNAIV  120
                  ++G + AG++   KHFP +G+     S  + P      ++L    L+PF+ AI 
Sbjct  151  ALAGAMIEGLQGAGVLATVKHFPGHGHGATD-SHKETPTTPRPEQRLRTVDLLPFQAAIE  209

Query  121  HGLDSMMVGGVSMSSAGVNVMHACLSEQVVNDLLRKDLKFNGVVVSECLEMEALTHNISV  180
             G+D++M   V  SS  ++   A  S+ ++ D+LRK   F+G+VVS+ L M+ +  +   
Sbjct  210  AGVDAVMAAHVIYSS--LDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMKGIADHGGP  267

Query  181  GGGTVMAKNAGCDIILLCRSFPVQQEAINGLKLGVENSIIGRARIEQSLRRVL  233
                  A  AG DI L+             LK  V+N  +  ARI+ ++RRVL
Sbjct  268  AEAVRRALEAGVDIALVPEER------TKYLKKVVKNGKLPMARIDAAVRRVL  314



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00006381

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  158     1e-45


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 158 bits (402),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 123/233 (53%), Gaps = 10/233 (4%)

Query  1    MGIAATGSKSLAYNVAYATAQELKAVGVNWILGPVLDVLTNVRTQPLGVRTTGDDPQEVS  60
            + +AAT    LA  + +A A+E++A+G++W   PV+DV  + R   +G R+  +DPQ VS
Sbjct  92   IALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVDVARDPR-WGIGERSFSEDPQLVS  150

Query  61   QYGVEFMKGYKKAGLVTCGKHFPSYGNLEFLGSQTDIPIITESLEQLSLTALVPFRNAIV  120
                  ++G + AG++   KHFP +G+     S  + P      ++L    L+PF+ AI 
Sbjct  151  ALAGAMIEGLQGAGVLATVKHFPGHGHGATD-SHKETPTTPRPEQRLRTVDLLPFQAAIE  209

Query  121  HGLDSMMVGGVSMSSAGVNVMHACLSEQVVNDLLRKDLKFNGVVVSECLEMEALTHNISV  180
             G+D++M   V  SS  ++   A  S+ ++ D+LRK   F+G+VVS+ L M+ +  +   
Sbjct  210  AGVDAVMAAHVIYSS--LDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMKGIADHGGP  267

Query  181  GGGTVMAKNAGCDIILLCRSFPVQQEAINGLKLGVENSIIGRARIEQSLRRVL  233
                  A  AG DI L+             LK  V+N  +  ARI+ ++RRVL
Sbjct  268  AEAVRRALEAGVDIALVPEER------TKYLKKVVKNGKLPMARIDAAVRRVL  314



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00000041

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  158     1e-45


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 158 bits (402),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 123/233 (53%), Gaps = 10/233 (4%)

Query  1    MGIAATGSKSLAYNVAYATAQELKAVGVNWILGPVLDVLTNVRTQPLGVRTTGDDPQEVS  60
            + +AAT    LA  + +A A+E++A+G++W   PV+DV  + R   +G R+  +DPQ VS
Sbjct  92   IALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVDVARDPR-WGIGERSFSEDPQLVS  150

Query  61   QYGVEFMKGYKKAGLVTCGKHFPSYGNLEFLGSQTDIPIITESLEQLSLTALVPFRNAIV  120
                  ++G + AG++   KHFP +G+     S  + P      ++L    L+PF+ AI 
Sbjct  151  ALAGAMIEGLQGAGVLATVKHFPGHGHGATD-SHKETPTTPRPEQRLRTVDLLPFQAAIE  209

Query  121  HGLDSMMVGGVSMSSAGVNVMHACLSEQVVNDLLRKDLKFNGVVVSECLEMEALTHNISV  180
             G+D++M   V  SS  ++   A  S+ ++ D+LRK   F+G+VVS+ L M+ +  +   
Sbjct  210  AGVDAVMAAHVIYSS--LDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMKGIADHGGP  267

Query  181  GGGTVMAKNAGCDIILLCRSFPVQQEAINGLKLGVENSIIGRARIEQSLRRVL  233
                  A  AG DI L+             LK  V+N  +  ARI+ ++RRVL
Sbjct  268  AEAVRRALEAGVDIALVPEER------TKYLKKVVKNGKLPMARIDAAVRRVL  314



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00000040

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  158     1e-45


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 158 bits (402),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 123/233 (53%), Gaps = 10/233 (4%)

Query  1    MGIAATGSKSLAYNVAYATAQELKAVGVNWILGPVLDVLTNVRTQPLGVRTTGDDPQEVS  60
            + +AAT    LA  + +A A+E++A+G++W   PV+DV  + R   +G R+  +DPQ VS
Sbjct  92   IALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVDVARDPR-WGIGERSFSEDPQLVS  150

Query  61   QYGVEFMKGYKKAGLVTCGKHFPSYGNLEFLGSQTDIPIITESLEQLSLTALVPFRNAIV  120
                  ++G + AG++   KHFP +G+     S  + P      ++L    L+PF+ AI 
Sbjct  151  ALAGAMIEGLQGAGVLATVKHFPGHGHGATD-SHKETPTTPRPEQRLRTVDLLPFQAAIE  209

Query  121  HGLDSMMVGGVSMSSAGVNVMHACLSEQVVNDLLRKDLKFNGVVVSECLEMEALTHNISV  180
             G+D++M   V  SS  ++   A  S+ ++ D+LRK   F+G+VVS+ L M+ +  +   
Sbjct  210  AGVDAVMAAHVIYSS--LDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMKGIADHGGP  267

Query  181  GGGTVMAKNAGCDIILLCRSFPVQQEAINGLKLGVENSIIGRARIEQSLRRVL  233
                  A  AG DI L+             LK  V+N  +  ARI+ ++RRVL
Sbjct  268  AEAVRRALEAGVDIALVPEER------TKYLKKVVKNGKLPMARIDAAVRRVL  314



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00000042

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  158     1e-45


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 158 bits (402),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 123/233 (53%), Gaps = 10/233 (4%)

Query  1    MGIAATGSKSLAYNVAYATAQELKAVGVNWILGPVLDVLTNVRTQPLGVRTTGDDPQEVS  60
            + +AAT    LA  + +A A+E++A+G++W   PV+DV  + R   +G R+  +DPQ VS
Sbjct  92   IALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVDVARDPR-WGIGERSFSEDPQLVS  150

Query  61   QYGVEFMKGYKKAGLVTCGKHFPSYGNLEFLGSQTDIPIITESLEQLSLTALVPFRNAIV  120
                  ++G + AG++   KHFP +G+     S  + P      ++L    L+PF+ AI 
Sbjct  151  ALAGAMIEGLQGAGVLATVKHFPGHGHGATD-SHKETPTTPRPEQRLRTVDLLPFQAAIE  209

Query  121  HGLDSMMVGGVSMSSAGVNVMHACLSEQVVNDLLRKDLKFNGVVVSECLEMEALTHNISV  180
             G+D++M   V  SS  ++   A  S+ ++ D+LRK   F+G+VVS+ L M+ +  +   
Sbjct  210  AGVDAVMAAHVIYSS--LDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMKGIADHGGP  267

Query  181  GGGTVMAKNAGCDIILLCRSFPVQQEAINGLKLGVENSIIGRARIEQSLRRVL  233
                  A  AG DI L+             LK  V+N  +  ARI+ ++RRVL
Sbjct  268  AEAVRRALEAGVDIALVPEER------TKYLKKVVKNGKLPMARIDAAVRRVL  314



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00000043

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  158     1e-45


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 158 bits (402),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 123/233 (53%), Gaps = 10/233 (4%)

Query  1    MGIAATGSKSLAYNVAYATAQELKAVGVNWILGPVLDVLTNVRTQPLGVRTTGDDPQEVS  60
            + +AAT    LA  + +A A+E++A+G++W   PV+DV  + R   +G R+  +DPQ VS
Sbjct  92   IALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVDVARDPR-WGIGERSFSEDPQLVS  150

Query  61   QYGVEFMKGYKKAGLVTCGKHFPSYGNLEFLGSQTDIPIITESLEQLSLTALVPFRNAIV  120
                  ++G + AG++   KHFP +G+     S  + P      ++L    L+PF+ AI 
Sbjct  151  ALAGAMIEGLQGAGVLATVKHFPGHGHGATD-SHKETPTTPRPEQRLRTVDLLPFQAAIE  209

Query  121  HGLDSMMVGGVSMSSAGVNVMHACLSEQVVNDLLRKDLKFNGVVVSECLEMEALTHNISV  180
             G+D++M   V  SS  ++   A  S+ ++ D+LRK   F+G+VVS+ L M+ +  +   
Sbjct  210  AGVDAVMAAHVIYSS--LDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMKGIADHGGP  267

Query  181  GGGTVMAKNAGCDIILLCRSFPVQQEAINGLKLGVENSIIGRARIEQSLRRVL  233
                  A  AG DI L+             LK  V+N  +  ARI+ ++RRVL
Sbjct  268  AEAVRRALEAGVDIALVPEER------TKYLKKVVKNGKLPMARIDAAVRRVL  314



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00000044

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00000045

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00000046

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  158     1e-45


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 158 bits (402),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 123/233 (53%), Gaps = 10/233 (4%)

Query  1    MGIAATGSKSLAYNVAYATAQELKAVGVNWILGPVLDVLTNVRTQPLGVRTTGDDPQEVS  60
            + +AAT    LA  + +A A+E++A+G++W   PV+DV  + R   +G R+  +DPQ VS
Sbjct  92   IALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVDVARDPR-WGIGERSFSEDPQLVS  150

Query  61   QYGVEFMKGYKKAGLVTCGKHFPSYGNLEFLGSQTDIPIITESLEQLSLTALVPFRNAIV  120
                  ++G + AG++   KHFP +G+     S  + P      ++L    L+PF+ AI 
Sbjct  151  ALAGAMIEGLQGAGVLATVKHFPGHGHGATD-SHKETPTTPRPEQRLRTVDLLPFQAAIE  209

Query  121  HGLDSMMVGGVSMSSAGVNVMHACLSEQVVNDLLRKDLKFNGVVVSECLEMEALTHNISV  180
             G+D++M   V  SS  ++   A  S+ ++ D+LRK   F+G+VVS+ L M+ +  +   
Sbjct  210  AGVDAVMAAHVIYSS--LDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMKGIADHGGP  267

Query  181  GGGTVMAKNAGCDIILLCRSFPVQQEAINGLKLGVENSIIGRARIEQSLRRVL  233
                  A  AG DI L+             LK  V+N  +  ARI+ ++RRVL
Sbjct  268  AEAVRRALEAGVDIALVPEER------TKYLKKVVKNGKLPMARIDAAVRRVL  314



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00006382

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  158     1e-45


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 158 bits (402),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 123/233 (53%), Gaps = 10/233 (4%)

Query  1    MGIAATGSKSLAYNVAYATAQELKAVGVNWILGPVLDVLTNVRTQPLGVRTTGDDPQEVS  60
            + +AAT    LA  + +A A+E++A+G++W   PV+DV  + R   +G R+  +DPQ VS
Sbjct  92   IALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVDVARDPR-WGIGERSFSEDPQLVS  150

Query  61   QYGVEFMKGYKKAGLVTCGKHFPSYGNLEFLGSQTDIPIITESLEQLSLTALVPFRNAIV  120
                  ++G + AG++   KHFP +G+     S  + P      ++L    L+PF+ AI 
Sbjct  151  ALAGAMIEGLQGAGVLATVKHFPGHGHGATD-SHKETPTTPRPEQRLRTVDLLPFQAAIE  209

Query  121  HGLDSMMVGGVSMSSAGVNVMHACLSEQVVNDLLRKDLKFNGVVVSECLEMEALTHNISV  180
             G+D++M   V  SS  ++   A  S+ ++ D+LRK   F+G+VVS+ L M+ +  +   
Sbjct  210  AGVDAVMAAHVIYSS--LDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMKGIADHGGP  267

Query  181  GGGTVMAKNAGCDIILLCRSFPVQQEAINGLKLGVENSIIGRARIEQSLRRVL  233
                  A  AG DI L+             LK  V+N  +  ARI+ ++RRVL
Sbjct  268  AEAVRRALEAGVDIALVPEER------TKYLKKVVKNGKLPMARIDAAVRRVL  314



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00006383

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  158     1e-45


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 158 bits (402),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 123/233 (53%), Gaps = 10/233 (4%)

Query  1    MGIAATGSKSLAYNVAYATAQELKAVGVNWILGPVLDVLTNVRTQPLGVRTTGDDPQEVS  60
            + +AAT    LA  + +A A+E++A+G++W   PV+DV  + R   +G R+  +DPQ VS
Sbjct  92   IALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVDVARDPR-WGIGERSFSEDPQLVS  150

Query  61   QYGVEFMKGYKKAGLVTCGKHFPSYGNLEFLGSQTDIPIITESLEQLSLTALVPFRNAIV  120
                  ++G + AG++   KHFP +G+     S  + P      ++L    L+PF+ AI 
Sbjct  151  ALAGAMIEGLQGAGVLATVKHFPGHGHGATD-SHKETPTTPRPEQRLRTVDLLPFQAAIE  209

Query  121  HGLDSMMVGGVSMSSAGVNVMHACLSEQVVNDLLRKDLKFNGVVVSECLEMEALTHNISV  180
             G+D++M   V  SS  ++   A  S+ ++ D+LRK   F+G+VVS+ L M+ +  +   
Sbjct  210  AGVDAVMAAHVIYSS--LDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMKGIADHGGP  267

Query  181  GGGTVMAKNAGCDIILLCRSFPVQQEAINGLKLGVENSIIGRARIEQSLRRVL  233
                  A  AG DI L+             LK  V+N  +  ARI+ ++RRVL
Sbjct  268  AEAVRRALEAGVDIALVPEER------TKYLKKVVKNGKLPMARIDAAVRRVL  314



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00000048

Length=472


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00000049

Length=472


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00000050

Length=303


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00000055

Length=345


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00006384

Length=345


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00000051

Length=345


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00006385

Length=418


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00006386

Length=345


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00000052

Length=345


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00000053

Length=430


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521459360


Query= TCONS_00000054

Length=422


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00006387

Length=345


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00000056

Length=396


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00000058

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding f...  74.4    5e-16


>CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding family. 
 This family includes the DNA-binding region of NDT80 as well 
as PhoG and its homologs. The family contains VIB-1. VIB-1 
is thought to be a regulator of conidiation in Neurospora crassa 
and shares a region of similarity to PHOG, a possible 
phosphate nonrepressible acid phosphatase in Aspergillus nidulans. 
It has been found that vib-1 is not the structural gene 
for nonrepressible acid phosphatase, but rather may regulate 
nonrepressible acid phosphatase activity.
Length=180

 Score = 74.4 bits (183),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 78/186 (42%), Gaps = 33/186 (18%)

Query  156  ELTCYRRNLFQITGSVTL-----PRSLRYIMT----EQGDRIPILAQELCISATESVEGN  206
            E TCYRRN FQ+T S TL     P  ++++ T      G+R+PI    L ISAT++   N
Sbjct  1    EWTCYRRNYFQVTASFTLPGFSPPTFVKHVFTTLQSGSGERVPIKYFALKISATKNSADN  60

Query  207  S--RSFQCPGKRPLRTAINQLMTMVLVTAMRRLRKNPHQFHWTSWRAKTWTLIMRRSRLL  264
            S     Q   KR             ++  +      PHQ    +   +  + +     ++
Sbjct  61   SPIELVQHTAKRD-----KGPQFAPVIVPLVPGPLPPHQLIREASNVRNNSKMDEIKTVV  115

Query  265  R------SGYNSVLRRPTTGGEK---------SCNNISS-AKILICEVHSGPVIVRGRSP  308
                       +       G ++         + + +S   KI + E+ S P+IVRGRSP
Sbjct  116  TVERLQFKSATAN-NGRRKGLQQYFVLVVKLGAIHTLSDGTKICLAELVSPPIIVRGRSP  174

Query  309  RNFQSR  314
             N++SR
Sbjct  175  GNYESR  180



Lambda      K        H        a         alpha
   0.314    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 663160908


Query= TCONS_00000059

Length=258


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00006388

Length=639
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462986 pfam10186, Atg14, Vacuolar sorting 38 and autophagy-re...  347     2e-115


>CDD:462986 pfam10186, Atg14, Vacuolar sorting 38 and autophagy-related subunit 
14.  The Atg14 or Apg14 proteins are hydrophilic proteins 
with a predicted molecular mass of 40.5 kDa, and have a 
coiled-coil motif at the N-terminus region. Yeast cells with 
mutant Atg14 are defective not only in autophagy but also 
in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, 
to the vacuole. Subcellular fractionation indicate 
that Apg14p and Apg6p are peripherally associated with a membrane 
structure(s). Apg14p was co-immunoprecipitated with Apg6p, 
suggesting that they form a stable protein complex. These 
results imply that Apg6/Vps30p has two distinct functions: 
in the autophagic process and in the vacuolar protein sorting 
pathway. Apg14p may be a component specifically required 
for the function of Apg6/Vps30p through the autophagic pathway. 
There are 17 auto-phagosomal component proteins which 
are categorized into six functional units, one of which is the 
AS-PI3K complex (Vps30/Atg6 and Atg14). The AS-PI3K complex 
and the Atg2-Atg18 complex are essential for nucleation, 
and the specific function of the AS-PI3K apparently is to produce 
phosphatidylinositol 3-phosphate (PtdIns(3)P) at the pre-autophagosomal 
structure (PAS). The localization of this 
complex at the PAS is controlled by Atg14. Autophagy mediates 
the cellular response to nutrient deprivation, protein aggregation, 
and pathogen invasion in humans, and malfunction of 
autophagy has been implicated in multiple human diseases including 
cancer. This effect seems to be mediated through direct 
interaction of the human Atg14 with Beclin 1 in the human 
phosphatidylinositol 3-kinase class III complex.
Length=347

 Score = 347 bits (891),  Expect = 2e-115, Method: Composition-based stats.
 Identities = 161/374 (43%), Positives = 223/374 (60%), Gaps = 56/374 (15%)

Query  3    CPICSRVSSSRLRFYCPTCACNQIYTLRINNARALLEKETLGRQVEKALLHQTSPTLSYH  62
            CPIC R   S   FYCPTCA N++Y LR++ AR L EK++L ++VE+AL  +        
Sbjct  1    CPICER---SGRPFYCPTCARNRLYELRVDLARLLSEKDSLKKKVEEALEGKEEGEQLED  57

Query  63   RFEEC----------STQSPDKVPSPQDR------------------RLTLARRRSDAES  94
                              S +++   +D+                  R +L +RRSD ES
Sbjct  58   NIGNKKLKLRLLKSEVAISNERLNEIKDKLDQLRREIAEKKKKIEKLRSSLKQRRSDLES  117

Query  95   SKFQLESREVALICGVQNTIKRTERLWHSLHSKTVEARIFLCREVANLYSLRQWMKQDGS  154
            + +QLE R  + +  +QN+IKR ++ W +LHSKT E+R FLCRE+A LY LRQ +K    
Sbjct  118  ASYQLEERRASQLAKLQNSIKRIKQKWTALHSKTAESRSFLCRELAKLYGLRQVVKSKNG  177

Query  155  EMKKTYVIGGVPIVDLRDLNGKSQNCPLLLDMPAPSINAQIGATAVQISTSFSNIARLLV  214
              K+ Y IGG+P+ DLRDLN                      A   +ISTS S IA+LLV
Sbjct  178  SSKEYYTIGGIPLPDLRDLN---------------------SAPPEEISTSLSYIAQLLV  216

Query  215  LVSHYLSLRLPAEITLPHKDHPVPTIHAPIASYISRELILTATSTQPHNLASSTTHPLGF  274
            LVSHYLS+RLPAEITLPH  +P+PTI +P +SY+S E      +    N +S ++     
Sbjct  217  LVSHYLSIRLPAEITLPHSCYPIPTIFSPASSYLSSESPFPGLT---SNSSSPSSSSKKP  273

Query  275  QSNHYQPRPLTIDRSLPKLAREDPESYVLFLEGVTLLAWNVSWLCRTQGLNI-ASDSWEE  333
             S+  +PRPL I++SLPKL++EDPE+Y  FLEGV+LLA+NV+WLCRTQG+N    D+ E+
Sbjct  274  PSHPPRPRPLFIEKSLPKLSKEDPETYSEFLEGVSLLAYNVAWLCRTQGVNSLDLDTLED  333

Query  334  ICNIGKNMWQLLVA  347
            +C+IGKN++ LLV+
Sbjct  334  LCDIGKNLYSLLVS  347



Lambda      K        H        a         alpha
   0.318    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 805235340


Query= TCONS_00000060

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462986 pfam10186, Atg14, Vacuolar sorting 38 and autophagy-re...  305     1e-99


>CDD:462986 pfam10186, Atg14, Vacuolar sorting 38 and autophagy-related subunit 
14.  The Atg14 or Apg14 proteins are hydrophilic proteins 
with a predicted molecular mass of 40.5 kDa, and have a 
coiled-coil motif at the N-terminus region. Yeast cells with 
mutant Atg14 are defective not only in autophagy but also 
in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, 
to the vacuole. Subcellular fractionation indicate 
that Apg14p and Apg6p are peripherally associated with a membrane 
structure(s). Apg14p was co-immunoprecipitated with Apg6p, 
suggesting that they form a stable protein complex. These 
results imply that Apg6/Vps30p has two distinct functions: 
in the autophagic process and in the vacuolar protein sorting 
pathway. Apg14p may be a component specifically required 
for the function of Apg6/Vps30p through the autophagic pathway. 
There are 17 auto-phagosomal component proteins which 
are categorized into six functional units, one of which is the 
AS-PI3K complex (Vps30/Atg6 and Atg14). The AS-PI3K complex 
and the Atg2-Atg18 complex are essential for nucleation, 
and the specific function of the AS-PI3K apparently is to produce 
phosphatidylinositol 3-phosphate (PtdIns(3)P) at the pre-autophagosomal 
structure (PAS). The localization of this 
complex at the PAS is controlled by Atg14. Autophagy mediates 
the cellular response to nutrient deprivation, protein aggregation, 
and pathogen invasion in humans, and malfunction of 
autophagy has been implicated in multiple human diseases including 
cancer. This effect seems to be mediated through direct 
interaction of the human Atg14 with Beclin 1 in the human 
phosphatidylinositol 3-kinase class III complex.
Length=347

 Score = 305 bits (782),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 143/353 (41%), Positives = 203/353 (58%), Gaps = 50/353 (14%)

Query  3    CPICSRVSSSRLRFYCPTCACNQIYTLRINNARALLEKETLGRQVEKALLHQTSPTLSYH  62
            CPIC R   S   FYCPTCA N++Y LR++ AR L EK++L ++VE+AL  +        
Sbjct  1    CPICER---SGRPFYCPTCARNRLYELRVDLARLLSEKDSLKKKVEEALEGKEEGEQLED  57

Query  63   RFEEC----------STQSPDKVPSPQDR------------------RLTLARRRSDAES  94
                              S +++   +D+                  R +L +RRSD ES
Sbjct  58   NIGNKKLKLRLLKSEVAISNERLNEIKDKLDQLRREIAEKKKKIEKLRSSLKQRRSDLES  117

Query  95   SKFQLESREVALICGVQNTIKRTERLWHSLHSKTVEARIFLCREVANLYSLRQWMKQDGS  154
            + +QLE R  + +  +QN+IKR ++ W +LHSKT E+R FLCRE+A LY LRQ +K    
Sbjct  118  ASYQLEERRASQLAKLQNSIKRIKQKWTALHSKTAESRSFLCRELAKLYGLRQVVKSKNG  177

Query  155  EMKKTYVIGGVPIVDLRDLNGKSQN---------CPLL------LDMPAPTEITLPHKDH  199
              K+ Y IGG+P+ DLRDLN                LL      L +  P EITLPH  +
Sbjct  178  SSKEYYTIGGIPLPDLRDLNSAPPEEISTSLSYIAQLLVLVSHYLSIRLPAEITLPHSCY  237

Query  200  PVPTIHAPIASYISRELILTATSTQPHNLASSTTHPLGFQSNHYQPRPLTIDRSLPKLAR  259
            P+PTI +P +SY+S E      +    N +S ++      S+  +PRPL I++SLPKL++
Sbjct  238  PIPTIFSPASSYLSSESPFPGLT---SNSSSPSSSSKKPPSHPPRPRPLFIEKSLPKLSK  294

Query  260  EDPESYVLFLEGVTLLAWNVSWLCRTQGLNI-ASDSWEEICNIGKNMWQLLVA  311
            EDPE+Y  FLEGV+LLA+NV+WLCRTQG+N    D+ E++C+IGKN++ LLV+
Sbjct  295  EDPETYSEFLEGVSLLAYNVAWLCRTQGVNSLDLDTLEDLCDIGKNLYSLLVS  347



Lambda      K        H        a         alpha
   0.318    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 763652708


Query= TCONS_00000061

Length=491
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462986 pfam10186, Atg14, Vacuolar sorting 38 and autophagy-re...  217     4e-67


>CDD:462986 pfam10186, Atg14, Vacuolar sorting 38 and autophagy-related subunit 
14.  The Atg14 or Apg14 proteins are hydrophilic proteins 
with a predicted molecular mass of 40.5 kDa, and have a 
coiled-coil motif at the N-terminus region. Yeast cells with 
mutant Atg14 are defective not only in autophagy but also 
in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, 
to the vacuole. Subcellular fractionation indicate 
that Apg14p and Apg6p are peripherally associated with a membrane 
structure(s). Apg14p was co-immunoprecipitated with Apg6p, 
suggesting that they form a stable protein complex. These 
results imply that Apg6/Vps30p has two distinct functions: 
in the autophagic process and in the vacuolar protein sorting 
pathway. Apg14p may be a component specifically required 
for the function of Apg6/Vps30p through the autophagic pathway. 
There are 17 auto-phagosomal component proteins which 
are categorized into six functional units, one of which is the 
AS-PI3K complex (Vps30/Atg6 and Atg14). The AS-PI3K complex 
and the Atg2-Atg18 complex are essential for nucleation, 
and the specific function of the AS-PI3K apparently is to produce 
phosphatidylinositol 3-phosphate (PtdIns(3)P) at the pre-autophagosomal 
structure (PAS). The localization of this 
complex at the PAS is controlled by Atg14. Autophagy mediates 
the cellular response to nutrient deprivation, protein aggregation, 
and pathogen invasion in humans, and malfunction of 
autophagy has been implicated in multiple human diseases including 
cancer. This effect seems to be mediated through direct 
interaction of the human Atg14 with Beclin 1 in the human 
phosphatidylinositol 3-kinase class III complex.
Length=347

 Score = 217 bits (555),  Expect = 4e-67, Method: Composition-based stats.
 Identities = 96/200 (48%), Positives = 130/200 (65%), Gaps = 25/200 (13%)

Query  1    MKQDGSEMKKTYVIGGVPIVDLRDLNGKSQNCPLLLDMPAPSINAQIGATAVQISTSFSN  60
            +K      K+ Y IGG+P+ DLRDLN                      A   +ISTS S 
Sbjct  172  VKSKNGSSKEYYTIGGIPLPDLRDLNS---------------------APPEEISTSLSY  210

Query  61   IARLLVLVSHYLSLRLPAEITLPHKDHPVPTIHAPIASYISRELILTATSTQPHNLASST  120
            IA+LLVLVSHYLS+RLPAEITLPH  +P+PTI +P +SY+S E      +    N +S +
Sbjct  211  IAQLLVLVSHYLSIRLPAEITLPHSCYPIPTIFSPASSYLSSESPFPGLT---SNSSSPS  267

Query  121  THPLGFQSNHYQPRPLTIDRSLPKLAREDPESYVLFLEGVTLLAWNVSWLCRTQGLNI-A  179
            +      S+  +PRPL I++SLPKL++EDPE+Y  FLEGV+LLA+NV+WLCRTQG+N   
Sbjct  268  SSSKKPPSHPPRPRPLFIEKSLPKLSKEDPETYSEFLEGVSLLAYNVAWLCRTQGVNSLD  327

Query  180  SDSWEEICNIGKNMWQLLVA  199
             D+ E++C+IGKN++ LLV+
Sbjct  328  LDTLEDLCDIGKNLYSLLVS  347



Lambda      K        H        a         alpha
   0.317    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 605626400


Query= TCONS_00000062

Length=1005
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  213     5e-63
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  92.7    7e-23


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 213 bits (545),  Expect = 5e-63, Method: Composition-based stats.
 Identities = 100/335 (30%), Positives = 156/335 (47%), Gaps = 56/335 (17%)

Query  300  HQRQGLVWMNELEKSARRGGILADDMGLGKTVQALSLIV-VRPGSIVERHATLIIAPAGL  358
            +Q +G+ WM  LE +  RGGILAD+MGLGKT+Q +SL++ ++         TLI+ P  L
Sbjct  1    YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGPTLIVVPLSL  60

Query  359  VQQWKESIKRLLNPGIYQRRVYVHHGSKR-----LVSFAHLHDHDIVITTYGTVAAEWQR  413
            +  W    +R ++P     RV V HG+KR           L D D+VITTY T+    ++
Sbjct  61   LHNWMNEFERWVSPP--ALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYETL----RK  114

Query  414  KQSIHHGSLSRSEPILGSSSRWHRVILDEAQNIKNDRSNAAMGCCAIDATYRWCLSATPL  473
             + +                 WHR++LDE   +KN +S  +    ++    RW L+ TPL
Sbjct  115  HKELLK------------KVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPL  162

Query  474  MNHQRELYSLLKFLRVAEYTSIDGTVSLPLAGSLNLPFKIRTFQSAFN----SGYEYERR  529
             N+  EL++LL FLR   + S+                   TF++ F+     G   +  
Sbjct  163  QNNLEELWALLNFLRPGPFGSLS------------------TFRNWFDRPIERGGGKKGV  204

Query  530  EAAEQLQNVLQAMLLRRTKSSVIGSQPIVQLPSRTTVKVYVDLNDEERRLYTALEGSVHA  589
                +L  +L+  LLRRTK  V  S     LP +    ++  L+  +R+LY         
Sbjct  205  ---SRLHKLLKPFLLRRTKKDVEKS-----LPPKVEYILFCRLSKLQRKLYQTFLLK--K  254

Query  590  QLDHHPNSEAMRHSVTHMISLLQRLQLACCHPFLV  624
             L+     E  R     ++++L RL+  C HP L+
Sbjct  255  DLNAIKTGEGGREIKASLLNILMRLRKICNHPGLI  289


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 92.7 bits (231),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 49/110 (45%), Gaps = 3/110 (3%)

Query  831  LEIVEQIQNDGTGDKIIIFSQFTSLLDLMEIPLQRRGWLFRRYDGSMRLADRHAVVVEFS  890
            LE + ++     G K++IFSQ    L+   + L++ G    R  G +   +R  ++ +F 
Sbjct  3    LEALLELLKKERGGKVLIFSQTKKTLEAELL-LEKEGIKVARLHGDLSQEEREEILEDF-  60

Query  891  TNPNCRLMLVSLRAGNAGLNLTAASKVIILDPFWNPFVEEQAIGRVHRIG  940
                   +LV+      GL+L     VI  D  WNP    Q IGR  R G
Sbjct  61   -RKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.318    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1287031284


Query= TCONS_00000063

Length=457
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 7...  483     4e-171


>CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 71.  Family 
of alpha-1,3-glucanases.
Length=372

 Score = 483 bits (1245),  Expect = 4e-171, Method: Composition-based stats.
 Identities = 190/391 (49%), Positives = 242/391 (62%), Gaps = 34/391 (9%)

Query  27   VSNAANFTITDWADHIRLAQDAQVDAFALNIAADDAINGHALQLAFTAAQRARFKVFFSF  86
            V N   +T++DW   I+LA+ A +D FALNI +D       L  A+ AA    FK+FFSF
Sbjct  7    VGNTPYYTVSDWETDIQLAKAAGIDGFALNIGSDS-WTDTQLADAYQAAAALGFKLFFSF  65

Query  87   DYVARGPWNQHDVIGLLLQYRTNEAYYRVNGHPFASTFEGSENAEEWKSVKAS--TDCFF  144
            D     P +  DVI L+ QY ++ A ++ NG PF STFEG  NA +W S+KA+     FF
Sbjct  66   DMAGPWPCDADDVISLINQYASHPAQFKYNGKPFVSTFEGDGNAFDWASIKAAWTGGIFF  125

Query  145  IPDWSSLGVKAALEKGYGIVDGLFSWAAWPSGAEDMNTQVDMSYLELLQQGGLAYMMPVS  204
            +PDWSSLG   A     G+VDGLFSW AWP+G  +M+T  D +YL  L+ GG  YMMPVS
Sbjct  126  VPDWSSLGPATAAGA-GGVVDGLFSWNAWPNGGTNMSTDTDAAYLSALK-GGKPYMMPVS  183

Query  205  PWFYTNL--PGYGKNWLWRGDDLWYDRWQEVLSLRPEFVEIISWNDYGESHYIGPLHQGG  262
            PWF+T+L  PGY KNW+WRGDDLWYDRW+++L L+P+FVEII+WNDYGESHYIGPL    
Sbjct  184  PWFFTHLGPPGYNKNWVWRGDDLWYDRWEQILELQPDFVEIITWNDYGESHYIGPLRG--  241

Query  263  YGVFKTGKAPF---NYVEGMPHDGWRILLPFIVGDYKNGS-AAVNEESLVTWYRTTPGAA  318
                    AP    N+V GMPHDGWR LLP+ +  YKNGS   + E+ LV WYR  P  A
Sbjct  242  ------KHAPDGSSNWVNGMPHDGWRDLLPYYIAAYKNGSTPTITEDQLVYWYRPHPKDA  295

Query  319  -CDAGGTSANTRSHGQVEFSPQEVTKDRIYYSALLTEYAVAEVTIGGVTQTGTWGSEPSS  377
             C +G T+ N           QE+ +D+++  ALLT  A   V+ GG TQ  T+      
Sbjct  296  TCSSGDTTGNPAG--------QELAQDKVFVVALLTSPATVTVSSGGNTQ-QTF----DV  342

Query  378  GKGIYHGSAPFNGATGDVEVTLSRRDNKVLT  408
              G+ HGS PFNG TG V V++SR    V +
Sbjct  343  PAGVNHGSVPFNG-TGAVSVSISRNGKTVAS  372



Lambda      K        H        a         alpha
   0.319    0.135    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 562869368


Query= TCONS_00000064

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431574 pfam10979, DUF2786, Protein of unknown function (DUF27...  57.1    1e-11


>CDD:431574 pfam10979, DUF2786, Protein of unknown function (DUF2786).  This 
family of proteins has no known function.
Length=40

 Score = 57.1 bits (139),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (3%)

Query  62   ILEKIQKCLNRAAHSSSTESEAKAALFIAHKMMTQYNVTQ  101
            IL+KI+K L  A  S++ E+EA+AAL  A ++M +Y + Q
Sbjct  2    ILDKIRKLLALAESSTN-EAEAEAALAKAQELMARYGLDQ  40



Lambda      K        H        a         alpha
   0.316    0.128    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 481536020


Query= TCONS_00000065

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00000066

Length=1362


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1740022400


Query= TCONS_00000067

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  97.2    2e-25


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 97.2 bits (243),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 35/64 (55%), Positives = 48/64 (75%), Gaps = 1/64 (2%)

Query  9   DYYLDLGLTATANEEDIKKQYRKLARKFHPDRNPGREHEFKPKFQAIQAAHEILSDPQQR  68
           DYY  LG++  A++E+IKK YRKLA K+HPD+NPG   E + KF+ I  A+E+LSDP++R
Sbjct  1   DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDP-EAEEKFKEINEAYEVLSDPEKR  59

Query  69  RKYD  72
             YD
Sbjct  60  AIYD  63



Lambda      K        H        a         alpha
   0.311    0.127    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0652    0.140     1.90     42.6     43.6 

Effective search space used: 690414096


Query= TCONS_00000068

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00000069

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00000070

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431594 pfam11001, DUF2841, Protein of unknown function (DUF28...  140     1e-43


>CDD:431594 pfam11001, DUF2841, Protein of unknown function (DUF2841).  This 
family of proteins with unknown function are all present 
in yeast.
Length=122

 Score = 140 bits (355),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 53/120 (44%), Positives = 72/120 (60%), Gaps = 2/120 (2%)

Query  67   NTQQATVQYWQILTSCPQNDWRVIGEAWIELIEPDKRHLYPYSGGDKAKPKWWPRRLRHE  126
            +T++ T  Y     +  Q + +VI +AWI++IEP K+  +PY+GG+K KP WWP  +RH+
Sbjct  4    DTEKVTAYYESAFKALQQLNCKVIAKAWIKVIEPKKQTKHPYNGGEKTKPPWWPAGVRHK  63

Query  127  TPHHLLTNKRIILLIHILRMSGKG-KITCAKLLEAAEQKAEAGKITERALTVLDEIIAIR  185
             P HL   +RI LL+HILR  G    IT AKL EA        K  ER L +LDEI  +R
Sbjct  64   EPDHLKKPERIRLLVHILRNLGPPHGITVAKLEEATADVRRQIKPAER-LEILDEIYRVR  122



Lambda      K        H        a         alpha
   0.316    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00000071

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433218 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like...  58.3    7e-12


>CDD:433218 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain. 
 
Length=67

 Score = 58.3 bits (142),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 23/73 (32%), Positives = 32/73 (44%), Gaps = 9/73 (12%)

Query  10  IIGTGPAGLFAAWALQNDGYQVTIIEKAREH---RYSTRRAEGVAGEDQPVDIPMRTFSG  66
           I+G G AGL AA  L   G++V ++EK R+       + R  G        D     F G
Sbjct  1   IVGAGLAGLVAAALLAKRGFRVLVLEK-RDRLGGNAYSYRVPGY-----VFDYGAHIFHG  54

Query  67  SYYSNLFRALEFL  79
           S   N+   L+ L
Sbjct  55  SDEPNVRDLLDEL  67



Lambda      K        H        a         alpha
   0.325    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 472215968


Query= TCONS_00000072

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00000073

Length=632


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 794911810


Query= TCONS_00000074

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00000075

Length=467


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 578206408


Query= TCONS_00000076

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00000077

Length=325


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 379043084


Query= TCONS_00000078

Length=2098
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  230     6e-70
CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  223     3e-66
CDD:434191 pfam14765, PS-DH, Polyketide synthase dehydratase. Thi...  211     2e-61
CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  148     4e-42
CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          148     2e-39
CDD:465059 pfam16197, KAsynt_C_assoc, Ketoacyl-synthetase C-termi...  77.2    4e-17
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  62.4    4e-12


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 230 bits (590),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 80/167 (48%), Positives = 100/167 (60%), Gaps = 3/167 (2%)

Query  1720  RSMTTWMVEYGATELILLSRRAGKDRESQSLSQELEQMGCSVHLVAGSVENPEDIARSIA  1779
             R +  W+ E GA  L+LLSR A    ++Q+L  ELE  G  V +VA  V +P+ +A  +A
Sbjct  14    RELARWLAERGARHLVLLSRSAAPRPDAQALIAELEARGVEVVVVACDVSDPDAVAALLA  73

Query  1780  SAKK---PIKGVFQLAMVLQDAPLLEMTYSDWVNVNGPKVTGTWNLHHALKDQPLDFFWL  1836
               K    PI+GV   A VL+DA L  MT  DW  V  PKVTGTWNLH A  D+PLDFF L
Sbjct  74    EIKAEGPPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLHEATPDEPLDFFVL  133

Query  1837  ASSILTAVDTPGQANYLATGTFLEAFCQYRHSLGLPASVLNICPVEG  1883
              SSI   + +PGQANY A   FL+A  +YR S GLPA+ +N  P   
Sbjct  134   FSSIAGLLGSPGQANYAAANAFLDALAEYRRSQGLPATSINWGPWAE  180


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 223 bits (570),  Expect = 3e-66, Method: Composition-based stats.
 Identities = 101/255 (40%), Positives = 136/255 (53%), Gaps = 11/255 (4%)

Query  50   EPIAICGLGLRLPGGIRDGDSFWDLLVNGRDARMPIPASRYNISGFDGSL-DGRDPIKTT  108
            EP+AI G+G R PGG  D + FW+ L+ GRD    IPA R++              I T 
Sbjct  1    EPVAIVGMGCRFPGGN-DPEEFWENLLEGRDGISEIPADRWDPDKLYDPPSRIAGKIYTK  59

Query  109  HGYFLDEDLSSLDASFFSMTKTELEKCDPQQRQLLEVTRECLEDAG--ETDYRGRNVGCY  166
             G   D      D  FF ++  E E+ DPQQR LLE   E LEDAG       G   G +
Sbjct  60   WGGLDDIF--DFDPLFFGISPREAERMDPQQRLLLEAAWEALEDAGITPDSLDGSRTGVF  117

Query  167  IGNFGHDWMEISLREPQHSRSY---NVLGYSDMILANRVSYEYDLRGPSVVIKTACSASL  223
            IG+   D+  + L +            +G    ++A R+SY   LRGPSV + TACS+SL
Sbjct  118  IGSGIGDYAALLLLDEDGGPRRGSPFAVGTMPSVIAGRISYFLGLRGPSVTVDTACSSSL  177

Query  224  VALHEACRALQARDIPSAIVGGTSLILAPTLTSNFFGE-GILSPEASCKTFDESADGFAR  282
            VA+H A +++++ +   A+ GG +L+L P L    F   G+LSP+  CK FD  ADGF R
Sbjct  178  VAIHAAVQSIRSGEADVALAGGVNLLLTP-LGFAGFSAAGMLSPDGPCKAFDPFADGFVR  236

Query  283  AEGVTAIYVKRLDDA  297
             EGV A+ +KRL DA
Sbjct  237  GEGVGAVVLKRLSDA  251


>CDD:434191 pfam14765, PS-DH, Polyketide synthase dehydratase.  This is the 
dehydratase domain of polyketide synthases. Structural analysis 
shows these DH domains are double hotdogs in which the 
active site contains a histidine from the N-terminal hotdog 
and an aspartate from the C-terminal hotdog. Studies have 
uncovered that a substrate tunnel formed between the DH domains 
may be essential for loading substrates and unloading products.
Length=296

 Score = 211 bits (538),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 97/304 (32%), Positives = 133/304 (44%), Gaps = 32/304 (11%)

Query  871   HSLLGERTVDSPDFSPIWRNMLSLEDVTWIADHKIRRDVVFPLAGYIAMAGEAIRQTTGV  930
             H LLG R     D  P+WRN L L D+ W+ DH++   VV P AGY+ MA EA RQ  G 
Sbjct  1     HPLLGSRVPSPSDLEPVWRNRLRLADLPWLRDHRVGGTVVLPGAGYLEMALEAARQLFGG  60

Query  931   DVGYRLRDVEARKALVLTDFKATEVVTVLHAHTGVPAEGPSWYDFSIASCHGGS--WLIH  988
                  LRDV   KALVL +    EV T L           SW++F I S  GG   W +H
Sbjct  61    SGAVALRDVSILKALVLPEDDPVEVQTSLTPE---EDGADSWWEFEIFSRAGGGWEWTLH  117

Query  989   CTGQVSPL----AETLSLSWEPESASQRSLPRELTPMRFYEAMARVGVVFGPEFQRLVDI  1044
              TG V       A  + L   P   +Q + PR ++   FYE +A  G+ +GP FQ L  I
Sbjct  118   ATGTVRLAPGEPAAPVDLESLPARCAQPADPRSVSSAEFYERLAARGLFYGPAFQGLRRI  177

Query  1045  TSSATDPLAEARVMSPAPRENKRPFALHPTAIDACIQLLIVAAARGLCRN--------LD  1096
                  + LAEAR+   A    + P+ LHP  +DA +QLL  A                ++
Sbjct  178   WRGDGEALAEARL-PEAAAGGESPYLLHPALLDAALQLLGAALPAEAEHADQAYLPVGIE  236

Query  1097  QLEVPVVVGNVEVVSRGSANLRALA-------QDFTQGVECVTENSKLALRMSGLQLAPL  1149
             +L        +         L   A       +     +  V E+ ++  R+ GL+L  +
Sbjct  237   RLR-------IYRSLPPGEPLWVHARLERRGGRTIVGDLTLVDEDGRVVARIEGLRLRRV  289

Query  1150  AAEV  1153
               E 
Sbjct  290   EREA  293


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 148 bits (377),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 52/127 (41%), Positives = 68/127 (54%), Gaps = 14/127 (11%)

Query  306  AVIRGTGTNSDGKSMGIMSPSAEAHEALMRQVYDQAGLSPRETAFVEEKRRLSNASKCHG  365
            AVI+G+  N DG+  G+ +P+ E     +R+    AG+ P +  +VE           HG
Sbjct  2    AVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDPEDVDYVE----------AHG  51

Query  366  TGTATGDPIEATAVGNVFSERG----VYIGSVKPNVGHSEGCSGITSLIKAVLALEHKTI  421
            TGT  GDPIEA A+  VF        + IGSVK N+GH EG +G   LIK VLAL H  I
Sbjct  52   TGTPLGDPIEAEALKRVFGSGARKQPLAIGSVKSNIGHLEGAAGAAGLIKVVLALRHGVI  111

Query  422  PPNIKFR  428
            PP +   
Sbjct  112  PPTLNLE  118


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 148 bits (375),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 101/333 (30%), Positives = 140/333 (42%), Gaps = 47/333 (14%)

Query  529  TMIFSGQGAQWAEMGKKLIETEASFRHDLASMDSILQSLRKPPCWSILEELQKPAEDSQI  588
              +FSGQG+QWA MG +L++T  +F    A +D   ++ +    +S+ + L+    +  +
Sbjct  1    VFVFSGQGSQWAGMGMQLLKTSPAFA---AVIDRADEAFKPQYGFSVSDVLRNN-PEGTL  56

Query  589  NRAEMAQPLCTALQVALFHQLKRLGIKPTAVVGHSSGEIAAAYAAGYITLEYALAVAYYR  648
            +  +  QP   A+Q+AL   L+  G++P AVVGHS GE AAA  AG ++ E AL  A  R
Sbjct  57   DGTQFVQPALFAMQIALAALLQSYGVRPDAVVGHSLGEYAAAVVAGALSPEEALLAAVLR  116

Query  649  GYITKNADRSRGAMAAVRLSATEVLPFLRTGVCIACENSPSSTTISGDKEALKEILARLK  708
              +        G MAAV LSA EV       V  A  NSP S  ISG +EA++E++ R+ 
Sbjct  117  SRLMMQL-AGPGGMAAVELSAEEVEQRWPDDVVGAVVNSPRSVVISGPQEAVRELVERVS  175

Query  709  EEKPDVFARLLKVEMAYHSRASETLLLVLRSTHIFADHMKPLGIEYLELLRAENNFGIPR  768
            +E   V A +  V  A HS   + +   L S    AD                     PR
Sbjct  176  KE--GVGALVENVNYAVHSPQMDAIAPALLSA--LADIAPRT----------------PR  215

Query  769  SADKALFLSSVICKPMVDTASFGPEYWVDNLNSP------IWHQDST-----------AT  811
                  F+SS    P         EYWV NL SP      I                   
Sbjct  216  VP----FISSTSIDPSDQRTLSA-EYWVRNLRSPVRFAEAILSAAEPGPLVFIEISPHPL  270

Query  812  FLSALGRMYQEAVPLAVKALFPEERRALCGLPV  844
             L+AL    + A    V  L     R      V
Sbjct  271  LLAALIDTLKSASDGKVATLVGTLIRDQTDFLV  303


>CDD:465059 pfam16197, KAsynt_C_assoc, Ketoacyl-synthetase C-terminal extension. 
 KAsynt_C_assoc represents the very C-terminus of a 
subset of proteins from the keto-acyl-synthetase 2 family. It 
is found in proteins ranging from bacteria to human.
Length=111

 Score = 77.2 bits (191),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 26/115 (23%), Positives = 44/115 (38%), Gaps = 41/115 (36%)

Query  430  PNPKIP-FVEKKLVVPIQPTPFPLDKAERISVNSFSIGGSNAHI----------------  472
            PNP IP  ++ +L V  +PTP+P      + VNSF  GG+NAH+                
Sbjct  1    PNPDIPALLDGRLKVVTEPTPWP---GGIVGVNSFGFGGANAHVILKSNPKPKIPPESPD  57

Query  473  --------------------DAYKSYARDHPDAISDIAYTLAVRRERLPHRAFAI  507
                                +  +++  D    +S +    ++     P+R +AI
Sbjct  58   NLPRLVLLSGRTEEAVKALLEKLENHLDDAEF-LSLLNDIHSLPISGHPYRGYAI  111


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 62.4 bits (152),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 8/106 (8%)

Query  1333  LEVSAGTGGTTEQTLRGLVDSSSLPPYSVYTFTDVSAGFFPQAKERFAYAPNMEFRTFDI  1392
             LE+  GTG      L  L           YT  D+S      A+ER A    +     ++
Sbjct  1     LEIGCGTGTLLRALLEALPGLE-------YTGLDISPAALEAARERLAALGLLNAVRVEL  53

Query  1393  SQDGLIQGFEAASYDIILAPNVVHATASLKETLSNLEPLLKPNGFI  1438
              Q  L +     S+D+++A NV+H  A  +  L N+  LLKP G +
Sbjct  54    FQLDLGELDPG-SFDVVVASNVLHHLADPRAVLRNIRRLLKPGGVL  98



Lambda      K        H        a         alpha
   0.318    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2631418942


Query= TCONS_00000079

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00006389

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00006390

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00000080

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00000081

Length=217
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466310 pfam20150, 2EXR, 2EXR family. This entry contains prot...  91.7    8e-25


>CDD:466310 pfam20150, 2EXR, 2EXR family.  This entry contains proteins with 
two conserved ExR motifs that may be functionally important. 
This entry represents a large and diverse family of proteins 
found in fungi.
Length=92

 Score = 91.7 bits (228),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 33/92 (36%), Positives = 46/92 (50%), Gaps = 0/92 (0%)

Query  4   FHYFPSLPAEIRLQIWNLSLPASRVIRITCDRGIKPNSRRYARGFRANHPNPVQLQVNRE  63
           F  FP LP E+RL IW L+LP  R+I +             +   R++ P P  L V RE
Sbjct  1   FPLFPKLPPELRLMIWELALPDPRIIEVRLKPPRDAPPDDSSSKRRSSSPIPALLHVCRE  60

Query  64  AREEALREFVPYFRTEVSPHACIYLAPERDTV  95
           +R  AL+ +  +     S  A +Y  PERDT+
Sbjct  61  SRAVALKYYRLFPTRGSSGPAPVYFNPERDTL  92



Lambda      K        H        a         alpha
   0.324    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00006391

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00000082

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00006392

Length=241


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00000083

Length=374


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00000084

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A              212     8e-67
CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal...  63.8    1e-13


>CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A.  
Length=284

 Score = 212 bits (541),  Expect = 8e-67, Method: Composition-based stats.
 Identities = 109/308 (35%), Positives = 146/308 (47%), Gaps = 45/308 (15%)

Query  29   TPQMGWNSWNTFKSQIN-SSVIENTV--QLFEHL-------GLKDVGYEYILLDEGWSDY  78
            TP MGW  W  F+  I+     EN +  QLF  +       G KD GYEY+ +D+ W   
Sbjct  1    TPPMGWLHWERFRCNIDCDDDPENCISEQLFMQMADRMAEDGWKDAGYEYVCIDDCWMSK  60

Query  79   SRTADGYLQPNLTSFPNGIKPLIDDNHAKELKIGLYGDSGILTCGFRPGSWSYEERDAQT  138
             R   G LQ +   FP+GIK L D  H+K LK+G+Y D G  TC   PGS  Y + DA+T
Sbjct  61   ERDKQGRLQADPKRFPSGIKKLADYVHSKGLKLGIYADVGTKTCAGYPGSLGYYDIDAKT  120

Query  139  LARWGVDYWKYDNCGGFQAMTEPPQVRFGIMQKALELSGRQIFYSVCEWGYQFPWHWG--  196
             A WGVD  K+D C  +  + +  +  +  M  AL  +GR I YS CEW           
Sbjct  121  FADWGVDLLKFDGC--YSNLEDLVE-GYPNMSFALNKTGRPIVYS-CEWPLYMGGLPQQV  176

Query  197  -----GKIGHSYRMSGDITAKFTNETGCACKTAYCLNTGYAGCSVLSII----RKMREIS  247
                  K  + +R   DI   +                     SV SI+           
Sbjct  177  NYTEIRKYCNHWRNYDDIQDSWD--------------------SVKSIVDWFADNQDVFV  216

Query  248  QYQTPGHWLDMDMLEIGNGEMTLYQQQTHFAFWAALKSPLIIGADLSKLSDESVAVLKNK  307
                PG W D DML IGN  ++  QQ+T  A WA + +PL +  DL  +S E+ A+L+NK
Sbjct  217  PAAGPGGWNDPDMLIIGNFGLSYDQQRTQMALWAIMAAPLFMSNDLRSISPEAKAILQNK  276

Query  308  DIIAVNQD  315
            D+IA+NQD
Sbjct  277  DVIAINQD  284


>CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal beta sandwich 
domain.  This domain is found at the C-terminus of alpha 
galactosidase enzymes.
Length=74

 Score = 63.8 bits (156),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 25/76 (33%), Positives = 35/76 (46%), Gaps = 3/76 (4%)

Query  330  EGAWQVWAGP-VNGGFVVLLLNEKSYPQALSVSFADLRLGLDGPVQVTELWSHKSLGKVD  388
            +G  QVWA P  NG   V L N +  P  ++V  +DL L       V +LW+ K LG   
Sbjct  1    DGDLQVWAKPLSNGDVAVALFN-RGGPSTVTVDLSDLGLPGASSYSVRDLWTGKDLGT-G  58

Query  389  GYKGVLQPYQTLVFRL  404
                 + P+   + RL
Sbjct  59   STSATVPPHGVALLRL  74



Lambda      K        H        a         alpha
   0.320    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00000086

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00000085

Length=399


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 481536020


Query= TCONS_00006393

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  229     7e-73


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 229 bits (587),  Expect = 7e-73, Method: Composition-based stats.
 Identities = 114/302 (38%), Positives = 159/302 (53%), Gaps = 25/302 (8%)

Query  21   IRNPIITGWNPDPSILRVGGEYFLATSSFEYWPSTPIYKSKDLANWELFSHAFTRPEQLQ  80
             RNP++ G+ PDPSILRVG +Y+L TSSFE++P  PI+ SKDL NW+L      R  QL 
Sbjct  1    YRNPVLPGFYPDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVNWKLVGPVLVRRSQL-  59

Query  81   LYGTPTGAGGPAGAWAPTLSYINGKYYLAAMTRWTYDPVARVWPRVMWVSSRDLRTWSDP  140
                     G   +WAP +SY +GKYYL     +T      ++  V   +      WSDP
Sbjct  60   ------SGRGSNASWAPDISYHDGKYYLY----YT-AVAHGIF--VAT-ADSPDGPWSDP  105

Query  141  IW--GDPWGIDPSLFQDPVSQKVYLNLMAPNNNKDRIWGIYQCEVDIDSGRCIGE-YRSM  197
                    GIDPSLF D   +K  +       +     GIY  E+D D  + +G   + +
Sbjct  106  GKLKSGGGGIDPSLFHDDDGKKYLVWGGWDPRHGHG--GIYLQELDNDGLKLVGPVTKLI  163

Query  198  WNGTLPHNASARPEGPKMFKRDKWYYLLIAEGGTDDLHRASIARSLAPEGPWEPAPHNPI  257
            + GT         EGP ++KR+ +YYL  A GGT   +   +ARS +P GP+E  P NPI
Sbjct  164  YPGTRWVGGKVT-EGPHLYKRNGYYYLTYAAGGTGGPYAVGVARSRSPLGPYEWHPGNPI  222

Query  258  LFNGAYGYDNLTVQSTGHATIFEAANGDSYVVYLARRKINGSSPLGRETFMSPVTWK-DG  316
            L + +       +   GHA++ E  +G+ ++VY A R  +G   LGRET + PV W+ DG
Sbjct  223  LTSRSPENP---IYGPGHASLVETPDGEWWIVYHAGRPGDGGYGLGRETRIQPVEWRADG  279

Query  317  WP  318
            WP
Sbjct  280  WP  281



Lambda      K        H        a         alpha
   0.319    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00006394

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  184     7e-56


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 184 bits (469),  Expect = 7e-56, Method: Composition-based stats.
 Identities = 101/301 (34%), Positives = 138/301 (46%), Gaps = 62/301 (21%)

Query  21   IRNPIITGWNPDPSILRVGGEYFLATSSFEYWPSTPIYKSKDLANWELFSHAFTRPEQLQ  80
             RNP++ G+ PDPSILRVG +Y+L TSSFE++P  PI+ SKDL NW+L      R  QL 
Sbjct  1    YRNPVLPGFYPDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVNWKLVGPVLVRRSQL-  59

Query  81   LYGTPTGAGGPAGAWAPTLSYINGKYYLAAMTRWTYDPVARVWPRVMWVSSRDLRTWSDP  140
                     G   +WAP +SY +GKYYL     +T      ++  V   +      WSDP
Sbjct  60   ------SGRGSNASWAPDISYHDGKYYLY----YT-AVAHGIF--VAT-ADSPDGPWSDP  105

Query  141  IW--GDPWGIDPSLFQDPVSQKVYLNLMAPNNNKDRIWGIYQCEVDIDSGR---------  189
                    GIDPSLF D   +K  +       +     GIY  E+D D  +         
Sbjct  106  GKLKSGGGGIDPSLFHDDDGKKYLVWGGWDPRHGHG--GIYLQELDNDGLKLVGPVTKLI  163

Query  190  ------------------------------CGTDDLHRASIARSLAPEGPWEPAPHNPIL  219
                                           GT   +   +ARS +P GP+E  P NPIL
Sbjct  164  YPGTRWVGGKVTEGPHLYKRNGYYYLTYAAGGTGGPYAVGVARSRSPLGPYEWHPGNPIL  223

Query  220  FNGAYGYDNLTVQSTGHATIFEAANGDSYVVYLARRKINGSSPLGRETFMSPVTWK-DGW  278
             + +       +   GHA++ E  +G+ ++VY A R  +G   LGRET + PV W+ DGW
Sbjct  224  TSRSPENP---IYGPGHASLVETPDGEWWIVYHAGRPGDGGYGLGRETRIQPVEWRADGW  280

Query  279  P  279
            P
Sbjct  281  P  281



Lambda      K        H        a         alpha
   0.319    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00000087

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  122     5e-35


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 122 bits (309),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 65/172 (38%), Positives = 86/172 (50%), Gaps = 17/172 (10%)

Query  21   IRNPIITGWNPDPSILRVGGEYFLATSSFEYWPSTPIYKSKDLANWELFSHAFTRPEQLQ  80
             RNP++ G+ PDPSILRVG +Y+L TSSFE++P  PI+ SKDL NW+L      R  QL 
Sbjct  1    YRNPVLPGFYPDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVNWKLVGPVLVRRSQLS  60

Query  81   LYGTPTGAGAWAPTLSYINGKYYLAAMTRWTYDPVARVWPRVMWVSSRDLR-TWSDPIW-  138
              G+      WAP +SY +GKYYL             V   +   ++      WSDP   
Sbjct  61   GRGSNAS---WAPDISYHDGKYYLY---------YTAVAHGIFVATADSPDGPWSDPGKL  108

Query  139  -GDPWGIDPSLFQDPVSQKVYLNLMAPNNNKDRIWGIYQCEVDIDSGRCIGE  189
                 GIDPSLF D   +K  +       +     GIY  E+D D  + +G 
Sbjct  109  KSGGGGIDPSLFHDDDGKKYLVWGGWDPRHGHG--GIYLQELDNDGLKLVGP  158



Lambda      K        H        a         alpha
   0.322    0.138    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00006395

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  227     7e-71
CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concana...  81.9    2e-18


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 227 bits (580),  Expect = 7e-71, Method: Composition-based stats.
 Identities = 114/302 (38%), Positives = 159/302 (53%), Gaps = 25/302 (8%)

Query  21   IRNPIITGWNPDPSILRVGGEYFLATSSFEYWPSTPIYKSKDLANWELFSHAFTRPEQLQ  80
             RNP++ G+ PDPSILRVG +Y+L TSSFE++P  PI+ SKDL NW+L      R  QL 
Sbjct  1    YRNPVLPGFYPDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVNWKLVGPVLVRRSQL-  59

Query  81   LYGTPTGAGGPAGAWAPTLSYINGKYYLAAMTRWTYDPVARVWPRVMWVSSRDLRTWSDP  140
                     G   +WAP +SY +GKYYL     +T      ++  V   +      WSDP
Sbjct  60   ------SGRGSNASWAPDISYHDGKYYLY----YT-AVAHGIF--VAT-ADSPDGPWSDP  105

Query  141  IW--GDPWGIDPSLFQDPVSQKVYLNLMAPNNNKDRIWGIYQCEVDIDSGRCIGE-YRSM  197
                    GIDPSLF D   +K  +       +     GIY  E+D D  + +G   + +
Sbjct  106  GKLKSGGGGIDPSLFHDDDGKKYLVWGGWDPRHGHG--GIYLQELDNDGLKLVGPVTKLI  163

Query  198  WNGTLPHNASARPEGPKMFKRDKWYYLLIAEGGTDDLHRASIARSLAPEGPWEPAPHNPI  257
            + GT         EGP ++KR+ +YYL  A GGT   +   +ARS +P GP+E  P NPI
Sbjct  164  YPGTRWVGGKVT-EGPHLYKRNGYYYLTYAAGGTGGPYAVGVARSRSPLGPYEWHPGNPI  222

Query  258  LFNGAYGYDNLTVQSTGHATIFEAANGDSYVVYLARRKINGSSPLGRETFMSPVTWK-DG  316
            L + +       +   GHA++ E  +G+ ++VY A R  +G   LGRET + PV W+ DG
Sbjct  223  LTSRSPENP---IYGPGHASLVETPDGEWWIVYHAGRPGDGGYGLGRETRIQPVEWRADG  279

Query  317  WP  318
            WP
Sbjct  280  WP  281


>CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concanavalin A-like 
domain.  This domain is found to the C-terminus of the 
pfam04616 domain. This domain adopts a concanavalin A-like 
fold.
Length=203

 Score = 81.9 bits (203),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 75/210 (36%), Gaps = 37/210 (18%)

Query  347  DTFDQKTLDPSWYTLRTPYAP-IYDLKDGGRKKSHGIVFRPN---VFG---LSDRDTPAA  399
            D FD   L   W  LR P     Y L +           RP    ++G   LS    P+ 
Sbjct  2    DDFDSPKLGLQWQWLRNPRDESWYSLTE-----------RPGYLRLYGRESLSSLFAPSL  50

Query  400  ILRKQKSLNMTFSAQLLPTTSGLGYGETVGISAYLSELQHQDIGVSGCVNSTGMCIFTQL  459
            + R+Q+  + T + +L         GE  G+  Y +E  H  +GV+      G  +    
Sbjct  51   LARRQQHFSFTATTKL--EFEPQKEGEEAGLVVYYNEYNHYYLGVT-KDEDGGRVLR---  104

Query  460  MMNGTTEYKQVKLNSTSIPSD-------LTLHIRATPLSYKLGYSFGSDETITWLASLSS  512
            ++         +L    +P         L + +      +   YS+   +  T    L +
Sbjct  105  LVRCDNGELTEELAEEEVPLGGEVKTVYLRVEVDGDTYQFS--YSYDGKDWKTIGPELDA  162

Query  513  SWL--AFAPSGWFVFEGASFALFATGTGQP  540
            S L   +A  G F   GA   L+AT  G+ 
Sbjct  163  SILSDEYAAGGGFT--GAFVGLYATDNGKG  190



Lambda      K        H        a         alpha
   0.318    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 714336584


Query= TCONS_00006396

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  101     9e-26
CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concana...  58.8    7e-11


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 101 bits (253),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 37/91 (41%), Positives = 53/91 (58%), Gaps = 4/91 (4%)

Query  47   GGTDDLHRASIARSLAPEGPWEPAPHNPILFNGAYGYDNLTVQSTGHATIFEAANGDSYV  106
            GGT   +   +ARS +P GP+E  P NPIL + +       +   GHA++ E  +G+ ++
Sbjct  194  GGTGGPYAVGVARSRSPLGPYEWHPGNPILTSRSPENP---IYGPGHASLVETPDGEWWI  250

Query  107  VYLARRKINGSSPLGRETFMSPVTWK-DGWP  136
            VY A R  +G   LGRET + PV W+ DGWP
Sbjct  251  VYHAGRPGDGGYGLGRETRIQPVEWRADGWP  281


>CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concanavalin A-like 
domain.  This domain is found to the C-terminus of the 
pfam04616 domain. This domain adopts a concanavalin A-like 
fold.
Length=203

 Score = 58.8 bits (143),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 42/106 (40%), Gaps = 20/106 (19%)

Query  165  DTFDQKTLDPSWYTLRTPYAP-IYDLKDGGRKKSHGIVFRPN---VFG---LSDRDTPAA  217
            D FD   L   W  LR P     Y L +           RP    ++G   LS    P+ 
Sbjct  2    DDFDSPKLGLQWQWLRNPRDESWYSLTE-----------RPGYLRLYGRESLSSLFAPSL  50

Query  218  ILRKQKSLNMTFSAQLLPTTSGLGYGETVGISAYLSELQHQDIGVS  263
            + R+Q+  + T + +L         GE  G+  Y +E  H  +GV+
Sbjct  51   LARRQQHFSFTATTKL--EFEPQKEGEEAGLVVYYNEYNHYYLGVT  94



Lambda      K        H        a         alpha
   0.317    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0745    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00000088

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  98.2    6e-24
CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concana...  84.2    2e-19


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 98.2 bits (245),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 37/91 (41%), Positives = 53/91 (58%), Gaps = 4/91 (4%)

Query  47   GGTDDLHRASIARSLAPEGPWEPAPHNPILFNGAYGYDNLTVQSTGHATIFEAANGDSYV  106
            GGT   +   +ARS +P GP+E  P NPIL + +       +   GHA++ E  +G+ ++
Sbjct  194  GGTGGPYAVGVARSRSPLGPYEWHPGNPILTSRSPENP---IYGPGHASLVETPDGEWWI  250

Query  107  VYLARRKINGSSPLGRETFMSPVTWK-DGWP  136
            VY A R  +G   LGRET + PV W+ DGWP
Sbjct  251  VYHAGRPGDGGYGLGRETRIQPVEWRADGWP  281


>CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concanavalin A-like 
domain.  This domain is found to the C-terminus of the 
pfam04616 domain. This domain adopts a concanavalin A-like 
fold.
Length=203

 Score = 84.2 bits (209),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 75/210 (36%), Gaps = 37/210 (18%)

Query  165  DTFDQKTLDPSWYTLRTPYAP-IYDLKDGGRKKSHGIVFRPN---VFG---LSDRDTPAA  217
            D FD   L   W  LR P     Y L +           RP    ++G   LS    P+ 
Sbjct  2    DDFDSPKLGLQWQWLRNPRDESWYSLTE-----------RPGYLRLYGRESLSSLFAPSL  50

Query  218  ILRKQKSLNMTFSAQLLPTTSGLGYGETVGISAYLSELQHQDIGVSGCVNSTGMCIFTQL  277
            + R+Q+  + T + +L         GE  G+  Y +E  H  +GV+      G  +    
Sbjct  51   LARRQQHFSFTATTKL--EFEPQKEGEEAGLVVYYNEYNHYYLGVT-KDEDGGRVLR---  104

Query  278  MMNGTTEYKQVKLNSTSIPSD-------LTLHIRATPLSYKLGYSFGSDETITWLASLSS  330
            ++         +L    +P         L + +      +   YS+   +  T    L +
Sbjct  105  LVRCDNGELTEELAEEEVPLGGEVKTVYLRVEVDGDTYQFS--YSYDGKDWKTIGPELDA  162

Query  331  SWL--AFAPSGWFVFEGASFALFATGTGQP  358
            S L   +A  G F   GA   L+AT  G+ 
Sbjct  163  SILSDEYAAGGGFT--GAFVGLYATDNGKG  190



Lambda      K        H        a         alpha
   0.316    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00006397

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  172     2e-51


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 172 bits (438),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 82/239 (34%), Positives = 119/239 (50%), Gaps = 18/239 (8%)

Query  28   DRLISGGPAGAWAPTLSYINGKYYLAAMTRWTYDPVARVWPRVMWVSSRDLRTWSDPIW-  86
             +L   G   +WAP +SY +GKYYL     +T      ++  V   +      WSDP   
Sbjct  57   SQLSGRGSNASWAPDISYHDGKYYLY----YT-AVAHGIF--VAT-ADSPDGPWSDPGKL  108

Query  87   -GDPWGIDPSLFQDPVSQKVYLNLMAPNNNKDRIWGIYQCEVDIDSGRCIGE-YRSMWNG  144
                 GIDPSLF D   +K  +       +     GIY  E+D D  + +G   + ++ G
Sbjct  109  KSGGGGIDPSLFHDDDGKKYLVWGGWDPRHGHG--GIYLQELDNDGLKLVGPVTKLIYPG  166

Query  145  TLPHNASARPEGPKMFKRDKWYYLLIAEGGTDDLHRASIARSLAPEGPWEPAPHNPILFN  204
            T         EGP ++KR+ +YYL  A GGT   +   +ARS +P GP+E  P NPIL +
Sbjct  167  TRWVGGKVT-EGPHLYKRNGYYYLTYAAGGTGGPYAVGVARSRSPLGPYEWHPGNPILTS  225

Query  205  GAYGYDNLTVQSTGHATIFEAANGDSYVVYLARRKINGSSPLGRETFMSPVTWK-DGWP  262
             +       +   GHA++ E  +G+ ++VY A R  +G   LGRET + PV W+ DGWP
Sbjct  226  RSPENP---IYGPGHASLVETPDGEWWIVYHAGRPGDGGYGLGRETRIQPVEWRADGWP  281



Lambda      K        H        a         alpha
   0.319    0.136    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00000096

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  101     9e-26
CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concana...  58.8    7e-11


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 101 bits (253),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 37/91 (41%), Positives = 53/91 (58%), Gaps = 4/91 (4%)

Query  47   GGTDDLHRASIARSLAPEGPWEPAPHNPILFNGAYGYDNLTVQSTGHATIFEAANGDSYV  106
            GGT   +   +ARS +P GP+E  P NPIL + +       +   GHA++ E  +G+ ++
Sbjct  194  GGTGGPYAVGVARSRSPLGPYEWHPGNPILTSRSPENP---IYGPGHASLVETPDGEWWI  250

Query  107  VYLARRKINGSSPLGRETFMSPVTWK-DGWP  136
            VY A R  +G   LGRET + PV W+ DGWP
Sbjct  251  VYHAGRPGDGGYGLGRETRIQPVEWRADGWP  281


>CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concanavalin A-like 
domain.  This domain is found to the C-terminus of the 
pfam04616 domain. This domain adopts a concanavalin A-like 
fold.
Length=203

 Score = 58.8 bits (143),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 42/106 (40%), Gaps = 20/106 (19%)

Query  165  DTFDQKTLDPSWYTLRTPYAP-IYDLKDGGRKKSHGIVFRPN---VFG---LSDRDTPAA  217
            D FD   L   W  LR P     Y L +           RP    ++G   LS    P+ 
Sbjct  2    DDFDSPKLGLQWQWLRNPRDESWYSLTE-----------RPGYLRLYGRESLSSLFAPSL  50

Query  218  ILRKQKSLNMTFSAQLLPTTSGLGYGETVGISAYLSELQHQDIGVS  263
            + R+Q+  + T + +L         GE  G+  Y +E  H  +GV+
Sbjct  51   LARRQQHFSFTATTKL--EFEPQKEGEEAGLVVYYNEYNHYYLGVT  94



Lambda      K        H        a         alpha
   0.317    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00000091

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  127     1e-34


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 127 bits (320),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 69/238 (29%), Positives = 98/238 (41%), Gaps = 55/238 (23%)

Query  28   DRLISGGPAGAWAPTLSYINGKYYLAAMTRWTYDPVARVWPRVMWVSSRDLRTWSDPIW-  86
             +L   G   +WAP +SY +GKYYL     +T      ++  V   +      WSDP   
Sbjct  57   SQLSGRGSNASWAPDISYHDGKYYLY----YT-AVAHGIF--VAT-ADSPDGPWSDPGKL  108

Query  87   -GDPWGIDPSLFQDPVSQKVYLNLMAPNNNKDRIWGIYQCEVDIDSGR------------  133
                 GIDPSLF D   +K  +       +     GIY  E+D D  +            
Sbjct  109  KSGGGGIDPSLFHDDDGKKYLVWGGWDPRHGHG--GIYLQELDNDGLKLVGPVTKLIYPG  166

Query  134  ---------------------------CGTDDLHRASIARSLAPEGPWEPAPHNPILFNG  166
                                        GT   +   +ARS +P GP+E  P NPIL + 
Sbjct  167  TRWVGGKVTEGPHLYKRNGYYYLTYAAGGTGGPYAVGVARSRSPLGPYEWHPGNPILTSR  226

Query  167  AYGYDNLTVQSTGHATIFEAANGDSYVVYLARRKINGSSPLGRETFMSPVTWK-DGWP  223
            +       +   GHA++ E  +G+ ++VY A R  +G   LGRET + PV W+ DGWP
Sbjct  227  SPENP---IYGPGHASLVETPDGEWWIVYHAGRPGDGGYGLGRETRIQPVEWRADGWP  281



Lambda      K        H        a         alpha
   0.319    0.136    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00000090

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  134     5e-39


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 134 bits (340),  Expect = 5e-39, Method: Composition-based stats.
 Identities = 77/213 (36%), Positives = 105/213 (49%), Gaps = 23/213 (11%)

Query  21   IRNPIITGWNPDPSILRVGGEYFLATSSFEYWPSTPIYKSKDLANWELFSHAFTRPEQLQ  80
             RNP++ G+ PDPSILRVG +Y+L TSSFE++P  PI+ SKDL NW+L      R  QL 
Sbjct  1    YRNPVLPGFYPDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVNWKLVGPVLVRRSQL-  59

Query  81   LYGTPTGAGGPAGAWAPTLSYINGKYYLAAMTRWTYDPVARVWPRVMWVSSRDLR-TWSD  139
                     G   +WAP +SY +GKYYL             V   +   ++      WSD
Sbjct  60   ------SGRGSNASWAPDISYHDGKYYLY---------YTAVAHGIFVATADSPDGPWSD  104

Query  140  PIW--GDPWGIDPSLFQDPVSQKVYLNLMAPNNNKDRIWGIYQCEVDIDSGRCIGE-YRS  196
            P        GIDPSLF D   +K  +       +     GIY  E+D D  + +G   + 
Sbjct  105  PGKLKSGGGGIDPSLFHDDDGKKYLVWGGWDPRHGHG--GIYLQELDNDGLKLVGPVTKL  162

Query  197  MWNGTLPHNASARPEGPKMFKRDKWYYLLIAEG  229
            ++ GT         EGP ++KR+ +YYL  A G
Sbjct  163  IYPGTRWVGGKVT-EGPHLYKRNGYYYLTYAAG  194



Lambda      K        H        a         alpha
   0.320    0.138    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00000089

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  110     7e-29


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 110 bits (277),  Expect = 7e-29, Method: Composition-based stats.
 Identities = 55/185 (30%), Positives = 76/185 (41%), Gaps = 47/185 (25%)

Query  27   WSDPIW--GDPWGIDPSLFQDPVSQKVYLNLMAPNNNKDRIWGIYQCEVDIDSGR-----  79
            WSDP        GIDPSLF D   +K  +       +     GIY  E+D D  +     
Sbjct  102  WSDPGKLKSGGGGIDPSLFHDDDGKKYLVWGGWDPRHGHG--GIYLQELDNDGLKLVGPV  159

Query  80   ----------------------------------CGTDDLHRASIARSLAPEGPWEPAPH  105
                                               GT   +   +ARS +P GP+E  P 
Sbjct  160  TKLIYPGTRWVGGKVTEGPHLYKRNGYYYLTYAAGGTGGPYAVGVARSRSPLGPYEWHPG  219

Query  106  NPILFNGAYGYDNLTVQSTGHATIFEAANGDSYVVYLARRKINGSSPLGRETFMSPVTWK  165
            NPIL + +       +   GHA++ E  +G+ ++VY A R  +G   LGRET + PV W+
Sbjct  220  NPILTSRSPENP---IYGPGHASLVETPDGEWWIVYHAGRPGDGGYGLGRETRIQPVEWR  276

Query  166  -DGWP  169
             DGWP
Sbjct  277  ADGWP  281



Lambda      K        H        a         alpha
   0.318    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00000092

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  148     2e-44


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 148 bits (376),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 77/209 (37%), Positives = 105/209 (50%), Gaps = 19/209 (9%)

Query  21   IRNPIITGWNPDPSILRVGGEYFLATSSFEYWPSTPIYKSKDLANWELFSHAFTRPEQLQ  80
             RNP++ G+ PDPSILRVG +Y+L TSSFE++P  PI+ SKDL NW+L      R  QL 
Sbjct  1    YRNPVLPGFYPDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVNWKLVGPVLVRRSQLS  60

Query  81   LYGTPTGAGAWAPTLSYINGKYYLAAMTRWTYDPVARVWPRVMWVSSRDLR-TWSDPIW-  138
              G+      WAP +SY +GKYYL             V   +   ++      WSDP   
Sbjct  61   GRGSNAS---WAPDISYHDGKYYLY---------YTAVAHGIFVATADSPDGPWSDPGKL  108

Query  139  -GDPWGIDPSLFQDPVSQKVYLNLMAPNNNKDRIWGIYQCEVDIDSGRCIGE-YRSMWNG  196
                 GIDPSLF D   +K  +       +     GIY  E+D D  + +G   + ++ G
Sbjct  109  KSGGGGIDPSLFHDDDGKKYLVWGGWDPRHGHG--GIYLQELDNDGLKLVGPVTKLIYPG  166

Query  197  TLPHNASARPEGPKMFKRDKWYYLLIAEG  225
            T         EGP ++KR+ +YYL  A G
Sbjct  167  TRWVGGKVT-EGPHLYKRNGYYYLTYAAG  194



Lambda      K        H        a         alpha
   0.321    0.137    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00000094

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  182     6e-54
CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concana...  81.9    2e-18


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 182 bits (463),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 101/301 (34%), Positives = 138/301 (46%), Gaps = 62/301 (21%)

Query  21   IRNPIITGWNPDPSILRVGGEYFLATSSFEYWPSTPIYKSKDLANWELFSHAFTRPEQLQ  80
             RNP++ G+ PDPSILRVG +Y+L TSSFE++P  PI+ SKDL NW+L      R  QL 
Sbjct  1    YRNPVLPGFYPDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVNWKLVGPVLVRRSQL-  59

Query  81   LYGTPTGAGGPAGAWAPTLSYINGKYYLAAMTRWTYDPVARVWPRVMWVSSRDLRTWSDP  140
                     G   +WAP +SY +GKYYL     +T      ++  V   +      WSDP
Sbjct  60   ------SGRGSNASWAPDISYHDGKYYLY----YT-AVAHGIF--VAT-ADSPDGPWSDP  105

Query  141  IW--GDPWGIDPSLFQDPVSQKVYLNLMAPNNNKDRIWGIYQCEVDIDSGR---------  189
                    GIDPSLF D   +K  +       +     GIY  E+D D  +         
Sbjct  106  GKLKSGGGGIDPSLFHDDDGKKYLVWGGWDPRHGHG--GIYLQELDNDGLKLVGPVTKLI  163

Query  190  ------------------------------CGTDDLHRASIARSLAPEGPWEPAPHNPIL  219
                                           GT   +   +ARS +P GP+E  P NPIL
Sbjct  164  YPGTRWVGGKVTEGPHLYKRNGYYYLTYAAGGTGGPYAVGVARSRSPLGPYEWHPGNPIL  223

Query  220  FNGAYGYDNLTVQSTGHATIFEAANGDSYVVYLARRKINGSSPLGRETFMSPVTWK-DGW  278
             + +       +   GHA++ E  +G+ ++VY A R  +G   LGRET + PV W+ DGW
Sbjct  224  TSRSPENP---IYGPGHASLVETPDGEWWIVYHAGRPGDGGYGLGRETRIQPVEWRADGW  280

Query  279  P  279
            P
Sbjct  281  P  281


>CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concanavalin A-like 
domain.  This domain is found to the C-terminus of the 
pfam04616 domain. This domain adopts a concanavalin A-like 
fold.
Length=203

 Score = 81.9 bits (203),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 75/210 (36%), Gaps = 37/210 (18%)

Query  308  DTFDQKTLDPSWYTLRTPYAP-IYDLKDGGRKKSHGIVFRPN---VFG---LSDRDTPAA  360
            D FD   L   W  LR P     Y L +           RP    ++G   LS    P+ 
Sbjct  2    DDFDSPKLGLQWQWLRNPRDESWYSLTE-----------RPGYLRLYGRESLSSLFAPSL  50

Query  361  ILRKQKSLNMTFSAQLLPTTSGLGYGETVGISAYLSELQHQDIGVSGCVNSTGMCIFTQL  420
            + R+Q+  + T + +L         GE  G+  Y +E  H  +GV+      G  +    
Sbjct  51   LARRQQHFSFTATTKL--EFEPQKEGEEAGLVVYYNEYNHYYLGVT-KDEDGGRVLR---  104

Query  421  MMNGTTEYKQVKLNSTSIPSD-------LTLHIRATPLSYKLGYSFGSDETITWLASLSS  473
            ++         +L    +P         L + +      +   YS+   +  T    L +
Sbjct  105  LVRCDNGELTEELAEEEVPLGGEVKTVYLRVEVDGDTYQFS--YSYDGKDWKTIGPELDA  162

Query  474  SWL--AFAPSGWFVFEGASFALFATGTGQP  501
            S L   +A  G F   GA   L+AT  G+ 
Sbjct  163  SILSDEYAAGGGFT--GAFVGLYATDNGKG  190



Lambda      K        H        a         alpha
   0.318    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 666189040


Query= TCONS_00000093

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  229     7e-73


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 229 bits (587),  Expect = 7e-73, Method: Composition-based stats.
 Identities = 114/302 (38%), Positives = 159/302 (53%), Gaps = 25/302 (8%)

Query  21   IRNPIITGWNPDPSILRVGGEYFLATSSFEYWPSTPIYKSKDLANWELFSHAFTRPEQLQ  80
             RNP++ G+ PDPSILRVG +Y+L TSSFE++P  PI+ SKDL NW+L      R  QL 
Sbjct  1    YRNPVLPGFYPDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVNWKLVGPVLVRRSQL-  59

Query  81   LYGTPTGAGGPAGAWAPTLSYINGKYYLAAMTRWTYDPVARVWPRVMWVSSRDLRTWSDP  140
                     G   +WAP +SY +GKYYL     +T      ++  V   +      WSDP
Sbjct  60   ------SGRGSNASWAPDISYHDGKYYLY----YT-AVAHGIF--VAT-ADSPDGPWSDP  105

Query  141  IW--GDPWGIDPSLFQDPVSQKVYLNLMAPNNNKDRIWGIYQCEVDIDSGRCIGE-YRSM  197
                    GIDPSLF D   +K  +       +     GIY  E+D D  + +G   + +
Sbjct  106  GKLKSGGGGIDPSLFHDDDGKKYLVWGGWDPRHGHG--GIYLQELDNDGLKLVGPVTKLI  163

Query  198  WNGTLPHNASARPEGPKMFKRDKWYYLLIAEGGTDDLHRASIARSLAPEGPWEPAPHNPI  257
            + GT         EGP ++KR+ +YYL  A GGT   +   +ARS +P GP+E  P NPI
Sbjct  164  YPGTRWVGGKVT-EGPHLYKRNGYYYLTYAAGGTGGPYAVGVARSRSPLGPYEWHPGNPI  222

Query  258  LFNGAYGYDNLTVQSTGHATIFEAANGDSYVVYLARRKINGSSPLGRETFMSPVTWK-DG  316
            L + +       +   GHA++ E  +G+ ++VY A R  +G   LGRET + PV W+ DG
Sbjct  223  LTSRSPENP---IYGPGHASLVETPDGEWWIVYHAGRPGDGGYGLGRETRIQPVEWRADG  279

Query  317  WP  318
            WP
Sbjct  280  WP  281



Lambda      K        H        a         alpha
   0.319    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00000095

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  227     7e-71
CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concana...  81.9    2e-18


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 227 bits (580),  Expect = 7e-71, Method: Composition-based stats.
 Identities = 114/302 (38%), Positives = 159/302 (53%), Gaps = 25/302 (8%)

Query  21   IRNPIITGWNPDPSILRVGGEYFLATSSFEYWPSTPIYKSKDLANWELFSHAFTRPEQLQ  80
             RNP++ G+ PDPSILRVG +Y+L TSSFE++P  PI+ SKDL NW+L      R  QL 
Sbjct  1    YRNPVLPGFYPDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVNWKLVGPVLVRRSQL-  59

Query  81   LYGTPTGAGGPAGAWAPTLSYINGKYYLAAMTRWTYDPVARVWPRVMWVSSRDLRTWSDP  140
                     G   +WAP +SY +GKYYL     +T      ++  V   +      WSDP
Sbjct  60   ------SGRGSNASWAPDISYHDGKYYLY----YT-AVAHGIF--VAT-ADSPDGPWSDP  105

Query  141  IW--GDPWGIDPSLFQDPVSQKVYLNLMAPNNNKDRIWGIYQCEVDIDSGRCIGE-YRSM  197
                    GIDPSLF D   +K  +       +     GIY  E+D D  + +G   + +
Sbjct  106  GKLKSGGGGIDPSLFHDDDGKKYLVWGGWDPRHGHG--GIYLQELDNDGLKLVGPVTKLI  163

Query  198  WNGTLPHNASARPEGPKMFKRDKWYYLLIAEGGTDDLHRASIARSLAPEGPWEPAPHNPI  257
            + GT         EGP ++KR+ +YYL  A GGT   +   +ARS +P GP+E  P NPI
Sbjct  164  YPGTRWVGGKVT-EGPHLYKRNGYYYLTYAAGGTGGPYAVGVARSRSPLGPYEWHPGNPI  222

Query  258  LFNGAYGYDNLTVQSTGHATIFEAANGDSYVVYLARRKINGSSPLGRETFMSPVTWK-DG  316
            L + +       +   GHA++ E  +G+ ++VY A R  +G   LGRET + PV W+ DG
Sbjct  223  LTSRSPENP---IYGPGHASLVETPDGEWWIVYHAGRPGDGGYGLGRETRIQPVEWRADG  279

Query  317  WP  318
            WP
Sbjct  280  WP  281


>CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concanavalin A-like 
domain.  This domain is found to the C-terminus of the 
pfam04616 domain. This domain adopts a concanavalin A-like 
fold.
Length=203

 Score = 81.9 bits (203),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 75/210 (36%), Gaps = 37/210 (18%)

Query  347  DTFDQKTLDPSWYTLRTPYAP-IYDLKDGGRKKSHGIVFRPN---VFG---LSDRDTPAA  399
            D FD   L   W  LR P     Y L +           RP    ++G   LS    P+ 
Sbjct  2    DDFDSPKLGLQWQWLRNPRDESWYSLTE-----------RPGYLRLYGRESLSSLFAPSL  50

Query  400  ILRKQKSLNMTFSAQLLPTTSGLGYGETVGISAYLSELQHQDIGVSGCVNSTGMCIFTQL  459
            + R+Q+  + T + +L         GE  G+  Y +E  H  +GV+      G  +    
Sbjct  51   LARRQQHFSFTATTKL--EFEPQKEGEEAGLVVYYNEYNHYYLGVT-KDEDGGRVLR---  104

Query  460  MMNGTTEYKQVKLNSTSIPSD-------LTLHIRATPLSYKLGYSFGSDETITWLASLSS  512
            ++         +L    +P         L + +      +   YS+   +  T    L +
Sbjct  105  LVRCDNGELTEELAEEEVPLGGEVKTVYLRVEVDGDTYQFS--YSYDGKDWKTIGPELDA  162

Query  513  SWL--AFAPSGWFVFEGASFALFATGTGQP  540
            S L   +A  G F   GA   L+AT  G+ 
Sbjct  163  SILSDEYAAGGGFT--GAFVGLYATDNGKG  190



Lambda      K        H        a         alpha
   0.318    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 714336584


Query= TCONS_00006398

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  108     2e-27
CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concana...  82.7    6e-19


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 108 bits (272),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 55/185 (30%), Positives = 76/185 (41%), Gaps = 47/185 (25%)

Query  27   WSDPIW--GDPWGIDPSLFQDPVSQKVYLNLMAPNNNKDRIWGIYQCEVDIDSGR-----  79
            WSDP        GIDPSLF D   +K  +       +     GIY  E+D D  +     
Sbjct  102  WSDPGKLKSGGGGIDPSLFHDDDGKKYLVWGGWDPRHGHG--GIYLQELDNDGLKLVGPV  159

Query  80   ----------------------------------CGTDDLHRASIARSLAPEGPWEPAPH  105
                                               GT   +   +ARS +P GP+E  P 
Sbjct  160  TKLIYPGTRWVGGKVTEGPHLYKRNGYYYLTYAAGGTGGPYAVGVARSRSPLGPYEWHPG  219

Query  106  NPILFNGAYGYDNLTVQSTGHATIFEAANGDSYVVYLARRKINGSSPLGRETFMSPVTWK  165
            NPIL + +       +   GHA++ E  +G+ ++VY A R  +G   LGRET + PV W+
Sbjct  220  NPILTSRSPENP---IYGPGHASLVETPDGEWWIVYHAGRPGDGGYGLGRETRIQPVEWR  276

Query  166  -DGWP  169
             DGWP
Sbjct  277  ADGWP  281


>CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concanavalin A-like 
domain.  This domain is found to the C-terminus of the 
pfam04616 domain. This domain adopts a concanavalin A-like 
fold.
Length=203

 Score = 82.7 bits (205),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 75/210 (36%), Gaps = 37/210 (18%)

Query  198  DTFDQKTLDPSWYTLRTPYAP-IYDLKDGGRKKSHGIVFRPN---VFG---LSDRDTPAA  250
            D FD   L   W  LR P     Y L +           RP    ++G   LS    P+ 
Sbjct  2    DDFDSPKLGLQWQWLRNPRDESWYSLTE-----------RPGYLRLYGRESLSSLFAPSL  50

Query  251  ILRKQKSLNMTFSAQLLPTTSGLGYGETVGISAYLSELQHQDIGVSGCVNSTGMCIFTQL  310
            + R+Q+  + T + +L         GE  G+  Y +E  H  +GV+      G  +    
Sbjct  51   LARRQQHFSFTATTKL--EFEPQKEGEEAGLVVYYNEYNHYYLGVT-KDEDGGRVLR---  104

Query  311  MMNGTTEYKQVKLNSTSIPSD-------LTLHIRATPLSYKLGYSFGSDETITWLASLSS  363
            ++         +L    +P         L + +      +   YS+   +  T    L +
Sbjct  105  LVRCDNGELTEELAEEEVPLGGEVKTVYLRVEVDGDTYQFS--YSYDGKDWKTIGPELDA  162

Query  364  SWL--AFAPSGWFVFEGASFALFATGTGQP  391
            S L   +A  G F   GA   L+AT  G+ 
Sbjct  163  SILSDEYAAGGGFT--GAFVGLYATDNGKG  190



Lambda      K        H        a         alpha
   0.318    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00006399

Length=350


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00000097

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  108     2e-27
CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concana...  82.7    6e-19


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 108 bits (272),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 55/185 (30%), Positives = 76/185 (41%), Gaps = 47/185 (25%)

Query  27   WSDPIW--GDPWGIDPSLFQDPVSQKVYLNLMAPNNNKDRIWGIYQCEVDIDSGR-----  79
            WSDP        GIDPSLF D   +K  +       +     GIY  E+D D  +     
Sbjct  102  WSDPGKLKSGGGGIDPSLFHDDDGKKYLVWGGWDPRHGHG--GIYLQELDNDGLKLVGPV  159

Query  80   ----------------------------------CGTDDLHRASIARSLAPEGPWEPAPH  105
                                               GT   +   +ARS +P GP+E  P 
Sbjct  160  TKLIYPGTRWVGGKVTEGPHLYKRNGYYYLTYAAGGTGGPYAVGVARSRSPLGPYEWHPG  219

Query  106  NPILFNGAYGYDNLTVQSTGHATIFEAANGDSYVVYLARRKINGSSPLGRETFMSPVTWK  165
            NPIL + +       +   GHA++ E  +G+ ++VY A R  +G   LGRET + PV W+
Sbjct  220  NPILTSRSPENP---IYGPGHASLVETPDGEWWIVYHAGRPGDGGYGLGRETRIQPVEWR  276

Query  166  -DGWP  169
             DGWP
Sbjct  277  ADGWP  281


>CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concanavalin A-like 
domain.  This domain is found to the C-terminus of the 
pfam04616 domain. This domain adopts a concanavalin A-like 
fold.
Length=203

 Score = 82.7 bits (205),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 75/210 (36%), Gaps = 37/210 (18%)

Query  198  DTFDQKTLDPSWYTLRTPYAP-IYDLKDGGRKKSHGIVFRPN---VFG---LSDRDTPAA  250
            D FD   L   W  LR P     Y L +           RP    ++G   LS    P+ 
Sbjct  2    DDFDSPKLGLQWQWLRNPRDESWYSLTE-----------RPGYLRLYGRESLSSLFAPSL  50

Query  251  ILRKQKSLNMTFSAQLLPTTSGLGYGETVGISAYLSELQHQDIGVSGCVNSTGMCIFTQL  310
            + R+Q+  + T + +L         GE  G+  Y +E  H  +GV+      G  +    
Sbjct  51   LARRQQHFSFTATTKL--EFEPQKEGEEAGLVVYYNEYNHYYLGVT-KDEDGGRVLR---  104

Query  311  MMNGTTEYKQVKLNSTSIPSD-------LTLHIRATPLSYKLGYSFGSDETITWLASLSS  363
            ++         +L    +P         L + +      +   YS+   +  T    L +
Sbjct  105  LVRCDNGELTEELAEEEVPLGGEVKTVYLRVEVDGDTYQFS--YSYDGKDWKTIGPELDA  162

Query  364  SWL--AFAPSGWFVFEGASFALFATGTGQP  391
            S L   +A  G F   GA   L+AT  G+ 
Sbjct  163  SILSDEYAAGGGFT--GAFVGLYATDNGKG  190



Lambda      K        H        a         alpha
   0.318    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00006400

Length=350


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00000098

Length=263
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concana...  82.7    8e-20


>CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concanavalin A-like 
domain.  This domain is found to the C-terminus of the 
pfam04616 domain. This domain adopts a concanavalin A-like 
fold.
Length=203

 Score = 82.7 bits (205),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 75/210 (36%), Gaps = 37/210 (18%)

Query  40   DTFDQKTLDPSWYTLRTPYAP-IYDLKDGGRKKSHGIVFRPN---VFG---LSDRDTPAA  92
            D FD   L   W  LR P     Y L +           RP    ++G   LS    P+ 
Sbjct  2    DDFDSPKLGLQWQWLRNPRDESWYSLTE-----------RPGYLRLYGRESLSSLFAPSL  50

Query  93   ILRKQKSLNMTFSAQLLPTTSGLGYGETVGISAYLSELQHQDIGVSGCVNSTGMCIFTQL  152
            + R+Q+  + T + +L         GE  G+  Y +E  H  +GV+      G  +    
Sbjct  51   LARRQQHFSFTATTKL--EFEPQKEGEEAGLVVYYNEYNHYYLGVT-KDEDGGRVLR---  104

Query  153  MMNGTTEYKQVKLNSTSIPSD-------LTLHIRATPLSYKLGYSFGSDETITWLASLSS  205
            ++         +L    +P         L + +      +   YS+   +  T    L +
Sbjct  105  LVRCDNGELTEELAEEEVPLGGEVKTVYLRVEVDGDTYQFS--YSYDGKDWKTIGPELDA  162

Query  206  SWL--AFAPSGWFVFEGASFALFATGTGQP  233
            S L   +A  G F   GA   L+AT  G+ 
Sbjct  163  SILSDEYAAGGGFT--GAFVGLYATDNGKG  190



Lambda      K        H        a         alpha
   0.317    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 290477132


Query= TCONS_00006401

Length=291


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00000103

Length=617
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  81.4    1e-17


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 81.4 bits (201),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 53/215 (25%), Positives = 80/215 (37%), Gaps = 26/215 (12%)

Query  5    VEFYFANVHHWIPILHVRKFREQIQTTEGWDKAIH---ILHAIVATCIRFSHHPGA----  57
            ++ +F N H   PILH   F                  +L AI+A    FS  P A    
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  58   -GTIEARREMAVASRQKVILN---SMESFSVENLQALVIIAFDTIGSGRGPSAWSIVGSM  113
              T EA   +    R  ++++   S  S S+  LQAL+++    +G+G     W   G  
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGLA  120

Query  114  TRTVEQLQLSVEESQGDRGSGEGEFLIQRMVFLKPSKFWWQAEERRRVFWTVFLMDRFCS  173
             R    L L  + S                V      +  +AE RRR+FW  F +DR  S
Sbjct  121  IRLARSLGLHRDPSY---------------VSPSWKLWIEEAELRRRLFWACFYLDRLIS  165

Query  174  VSTGWNLSLTSADVKRRLPCEGALWEKEYEVRAPF  208
            +  G    L+ +D+   LPC+     +        
Sbjct  166  LILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVT  200



Lambda      K        H        a         alpha
   0.318    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784574700


Query= TCONS_00000102

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  81.0    1e-17


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 81.0 bits (200),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 53/215 (25%), Positives = 80/215 (37%), Gaps = 26/215 (12%)

Query  5    VEFYFANVHHWIPILHVRKFREQIQTTEGWDKAIH---ILHAIVATCIRFSHHPGA----  57
            ++ +F N H   PILH   F                  +L AI+A    FS  P A    
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  58   -GTIEARREMAVASRQKVILN---SMESFSVENLQALVIIAFDTIGSGRGPSAWSIVGSM  113
              T EA   +    R  ++++   S  S S+  LQAL+++    +G+G     W   G  
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGLA  120

Query  114  TRTVEQLQLSVEESQGDRGSGEGEFLIQRMVFLKPSKFWWQAEERRRVFWTVFLMDRFCS  173
             R    L L  + S                V      +  +AE RRR+FW  F +DR  S
Sbjct  121  IRLARSLGLHRDPSY---------------VSPSWKLWIEEAELRRRLFWACFYLDRLIS  165

Query  174  VSTGWNLSLTSADVKRRLPCEGALWEKEYEVRAPF  208
            +  G    L+ +D+   LPC+     +        
Sbjct  166  LILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVT  200



Lambda      K        H        a         alpha
   0.319    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00000104

Length=350


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00000106

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            98.3    3e-23


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 98.3 bits (245),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 66/370 (18%), Positives = 133/370 (36%), Gaps = 27/370 (7%)

Query  63   MLATYFCQALDKGTLGFASIMGIQTDAHLVGNEYSWLGTILYIGVLAGEYPTNFLLQKLP  122
            +    F  AL +  LG A  + +  D  +   E   L T+  +G    +     L  +  
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  123  VGKYIASNVFLWGVVIACSAAATNFPGLMAVRFLLGVFESCVQPCFILMTSMWYTRSEQT  182
              + +   + L+ + +     A++   L+ +R L G+    + P  + + + W+   E+ 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  183  ILTSLWYCMMGVQLMIGGLLAYGVEHYRGHSIKSWQLLFLVLGVATCAWALFMGWYLPDS  242
                L     G+   +G LL   +      S+  W+  FL+L + +   A+     LP  
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLL-----ASLFGWRAAFLILAILSLLAAVL--LLLPRP  173

Query  243  PMKAKCWSEADKRLMVERVRANETGIQNRVFKKYQVLEVLRDPAIWLYALLQMTSCLIIG  302
            P ++K    A++  +   V                   +LRDP +WL   L +       
Sbjct  174  PPESKRPKPAEEARLSLIVA---------------WKALLRDPVLWLLLAL-LLFGFAFF  217

Query  303  GLGVFSNIIIKSFGFTTLQT-QLLNIAQGGVTIAVMVGGASLATWTKQTILTMHLWTIPA  361
            GL  +  +  +  G + L    LL +      I  ++ G       ++  L +    +  
Sbjct  218  GLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLL---ALLL  274

Query  362  IIGTAIIFTIPPTPKTRAGLLIAFYCTQFILAEGNLLFSLISRNVAGQTKKSTVLAVTFI  421
            +I  A+   +     +   LL+A     F         + +  ++A + ++ T   +   
Sbjct  275  LILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNT  334

Query  422  AWSASNAAAP  431
            A S   A  P
Sbjct  335  AGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00000107

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            104     4e-25


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 104 bits (261),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 66/370 (18%), Positives = 133/370 (36%), Gaps = 27/370 (7%)

Query  63   MLATYFCQALDKGTLGFASIMGIQTDAHLVGNEYSWLGTILYIGVLAGEYPTNFLLQKLP  122
            +    F  AL +  LG A  + +  D  +   E   L T+  +G    +     L  +  
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  123  VGKYIASNVFLWGVVIACSAAATNFPGLMAVRFLLGVFESCVQPCFILMTSMWYTRSEQT  182
              + +   + L+ + +     A++   L+ +R L G+    + P  + + + W+   E+ 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  183  ILTSLWYCMMGVQLMIGGLLAYGVEHYRGHSIKSWQLLFLVLGVATCAWALFMGWYLPDS  242
                L     G+   +G LL   +      S+  W+  FL+L + +   A+     LP  
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLL-----ASLFGWRAAFLILAILSLLAAVL--LLLPRP  173

Query  243  PMKAKCWSEADKRLMVERVRANETGIQNRVFKKYQVLEVLRDPAIWLYALLQMTSCLIIG  302
            P ++K    A++  +   V                   +LRDP +WL   L +       
Sbjct  174  PPESKRPKPAEEARLSLIVA---------------WKALLRDPVLWLLLAL-LLFGFAFF  217

Query  303  GLGVFSNIIIKSFGFTTLQT-QLLNIAQGGVTIAVMVGGASLATWTKQTILTMHLWTIPA  361
            GL  +  +  +  G + L    LL +      I  ++ G       ++  L +    +  
Sbjct  218  GLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLL---ALLL  274

Query  362  IIGTAIIFTIPPTPKTRAGLLIAFYCTQFILAEGNLLFSLISRNVAGQTKKSTVLAVTFI  421
            +I  A+   +     +   LL+A     F         + +  ++A + ++ T   +   
Sbjct  275  LILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNT  334

Query  422  AWSASNAAAP  431
            A S   A  P
Sbjct  335  AGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00000108

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            104     4e-25


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 104 bits (261),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 66/370 (18%), Positives = 133/370 (36%), Gaps = 27/370 (7%)

Query  63   MLATYFCQALDKGTLGFASIMGIQTDAHLVGNEYSWLGTILYIGVLAGEYPTNFLLQKLP  122
            +    F  AL +  LG A  + +  D  +   E   L T+  +G    +     L  +  
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  123  VGKYIASNVFLWGVVIACSAAATNFPGLMAVRFLLGVFESCVQPCFILMTSMWYTRSEQT  182
              + +   + L+ + +     A++   L+ +R L G+    + P  + + + W+   E+ 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  183  ILTSLWYCMMGVQLMIGGLLAYGVEHYRGHSIKSWQLLFLVLGVATCAWALFMGWYLPDS  242
                L     G+   +G LL   +      S+  W+  FL+L + +   A+     LP  
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLL-----ASLFGWRAAFLILAILSLLAAVL--LLLPRP  173

Query  243  PMKAKCWSEADKRLMVERVRANETGIQNRVFKKYQVLEVLRDPAIWLYALLQMTSCLIIG  302
            P ++K    A++  +   V                   +LRDP +WL   L +       
Sbjct  174  PPESKRPKPAEEARLSLIVA---------------WKALLRDPVLWLLLAL-LLFGFAFF  217

Query  303  GLGVFSNIIIKSFGFTTLQT-QLLNIAQGGVTIAVMVGGASLATWTKQTILTMHLWTIPA  361
            GL  +  +  +  G + L    LL +      I  ++ G       ++  L +    +  
Sbjct  218  GLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLL---ALLL  274

Query  362  IIGTAIIFTIPPTPKTRAGLLIAFYCTQFILAEGNLLFSLISRNVAGQTKKSTVLAVTFI  421
            +I  A+   +     +   LL+A     F         + +  ++A + ++ T   +   
Sbjct  275  LILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNT  334

Query  422  AWSASNAAAP  431
            A S   A  P
Sbjct  335  AGSLGGALGP  344



Lambda      K        H        a         alpha
   0.324    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00000109

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.143    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00000111

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00000110

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00000112

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  197     8e-58


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 197 bits (504),  Expect = 8e-58, Method: Composition-based stats.
 Identities = 122/465 (26%), Positives = 192/465 (41%), Gaps = 55/465 (12%)

Query  50   PGPKLWQTSYIFRHIASIRGT--LDVSIKAFHTEYGPVVR-----------YSPDELSFI  96
            PGP       +F ++  +     L         +YGP+ R             P+     
Sbjct  2    PGPPPL---PLFGNLLQLGRKGNLHSVFTKLQKKYGPIFRLYLGPKPVVVLSGPE----A  54

Query  97   SAEAWRDIYGFRENALPKDPSFYGLIQLSRDKSPSIFTVDQDHHPRVRKALSYAFSEKAL  156
              E      G   +  P +P F         K   I   +     ++R+ L+  F+    
Sbjct  55   VKEVLIK-KGEEFSGRPDEPWFATSRGPFLGKG--IVFANGPRWRQLRRFLTPTFTSFGK  111

Query  157  HDQEPFVKHYVDLLIQRLRGIADAEDNRVDLVKWYNFTTFDIIGDLAIGRSFDCLQDSAY  216
               EP V+     L+++LR  A  E   +D+         ++I  +  G  F  L+D  +
Sbjct  112  LSFEPRVEEEARDLVEKLRKTAG-EPGVIDITDLLFRAALNVICSILFGERFGSLEDPKF  170

Query  217  HSWVDAFWKSIKMISPYARAMATYTDVPRLLRLFAP---RALKEARLRRLQYVGVHMEER  273
               V A  +   ++S  +  +    D+  +L+ F     R LK AR +    +   +EER
Sbjct  171  LELVKAVQELSSLLSSPSPQLL---DLFPILKYFPGPHGRKLKRARKKIKDLLDKLIEER  227

Query  274  LARGILRD----KPDFISYILRSKGTAD--ELTDGEVEANVSFLLLAGTETTATALSGTT  327
              R  L        DF+  +L +K   D  +LTD E+ A V  L  AGT+TT++ LS   
Sbjct  228  --RETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWAL  285

Query  328  YYLLKNPEGLRKATAEVRSAYNSEDEITFATTAERLPYMQACLTEGLRIYPSGPIAAPRR  387
            Y L K+PE   K   E+      +   T+      +PY+ A + E LR++P  P+  PR 
Sbjct  286  YELAKHPEVQEKLREEIDEVIGDKRSPTYDDLQN-MPYLDAVIKETLRLHPVVPLLLPRE  344

Query  388  TPRGTVTWIAGHPVP-------PVGGASNSPLNFHRQADFIPERWLSPSTMDPASPFRRD  440
              + TV  I G+ +P        +      P  F    +F PER+L  +       FR  
Sbjct  345  VTKDTV--IPGYLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDENG-----KFR--  395

Query  441  NRAASQPFSVGPRNCLGKAFALNEMQVILARMLWNFDMKLLPQSD  485
               A  PF  GPRNCLG+  A  EM++ LA +L NF+++L P +D
Sbjct  396  KSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPGTD  440



Lambda      K        H        a         alpha
   0.322    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00000114

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398861 pfam05426, Alginate_lyase, Alginate lyase. This family...  89.8    7e-21


>CDD:398861 pfam05426, Alginate_lyase, Alginate lyase.  This family contains 
several bacterial alginate lyase proteins. Alginate is a 
family of 1-4-linked copolymers of beta -D-mannuronic acid 
(M) and alpha -L-guluronic acid (G). It is produced by brown 
algae and by some bacteria belonging to the genera Azotobacter 
and Pseudomonas. Alginate lyases catalyze the depolymerization 
of alginates by beta -elimination, generating a molecule 
containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at 
the nonreducing end. This family adopts an all alpha fold.
Length=274

 Score = 89.8 bits (223),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 50/254 (20%), Positives = 86/254 (34%), Gaps = 35/254 (14%)

Query  74   NPQAVVYRGSDGT-----HSENYASLYRDIAAAYITAIYWKVTGDTAYADKAVSILDAWA  128
             P  + Y   DG         +  +L     A  + A+ + +TGD  YA+KA  +L AW 
Sbjct  29   KPDGLPYIRRDGQRNPEDLVCDRKALAAWADAVALLALAYYLTGDKRYAEKAGELLRAWF  88

Query  129  AT----------LTGISGSSDKFLAAGIYGYEIANAAEIMRTYNGWSAQNIAKFQNMMVE  178
                                     AGI   E+ +A  ++     W  ++    +    +
Sbjct  89   LDPATRMNPNLEYAQAIPGIATGRGAGIIDTEVLDALILLEAAPAWDPKDRKAIEAWFAQ  148

Query  179  VFYPLNHIFLEQHNGAAIDHYWANWDLCNIASMMSIGVLTDNRTMYDEAINYFKTGAGNG  238
            +   L      +   AA      N        + +I +   +R ++D A+  +K      
Sbjct  149  LLDWLQTSPKGRDEKAAK----NNHGYWAALQVAAIALYLGDRDLFDWALKRYKRAILPD  204

Query  239  QIEKMIWKLYQVDGQTLGQGQEAGRDQGHAMLDFAL--LGVIAQTAYNQGDDLFGYLD--  294
            QI          DG       E  R +     +FAL  L +IA+ A   G DL+ Y    
Sbjct  205  QIAP--------DGS---LPLELARTRALHYSNFALQALVMIAEIAERNGVDLWEYRTPD  253

Query  295  -NRILAGAEYVAKY  307
               +    +++  Y
Sbjct  254  GATLHKAVDFLLPY  267



Lambda      K        H        a         alpha
   0.317    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00000115

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00006402

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.145    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00000118

Length=516


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00006403

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398274 pfam04488, Gly_transf_sug, Glycosyltransferase sugar-b...  62.4    1e-12


>CDD:398274 pfam04488, Gly_transf_sug, Glycosyltransferase sugar-binding 
region containing DXD motif.  The DXD motif is a short conserved 
motif found in many families of glycosyltransferases, which 
add a range of different sugars to other sugars, phosphates 
and proteins. DXD-containing glycosyltransferases all use 
nucleoside diphosphate sugars as donors and require divalent 
cations, usually manganese. The DXD motif is expected to 
play a carbohydrate binding role in sugar-nucleoside diphosphate 
and manganese dependent glycosyltransferases.
Length=93

 Score = 62.4 bits (152),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 21/68 (31%), Positives = 31/68 (46%), Gaps = 2/68 (3%)

Query  75   GWKVEYWSEEACLELAHEVDASGT--FAAAFEKLPYAVLKSDFCRYLVLFGRGGVYSDLD  132
             +     S++    L      S T  F  A+  LP  + KSD  RY +L+  GG+Y D D
Sbjct  17   DYCYVVLSDDLDFALDINFLKSDTPWFLEAYSLLPLFIAKSDLLRYAILYKYGGIYLDTD  76

Query  133  VHLVQPLP  140
            V  ++ L 
Sbjct  77   VIPLKSLN  84



Lambda      K        H        a         alpha
   0.322    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 718819868


Query= TCONS_00006404

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398274 pfam04488, Gly_transf_sug, Glycosyltransferase sugar-b...  62.4    1e-12


>CDD:398274 pfam04488, Gly_transf_sug, Glycosyltransferase sugar-binding 
region containing DXD motif.  The DXD motif is a short conserved 
motif found in many families of glycosyltransferases, which 
add a range of different sugars to other sugars, phosphates 
and proteins. DXD-containing glycosyltransferases all use 
nucleoside diphosphate sugars as donors and require divalent 
cations, usually manganese. The DXD motif is expected to 
play a carbohydrate binding role in sugar-nucleoside diphosphate 
and manganese dependent glycosyltransferases.
Length=93

 Score = 62.4 bits (152),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 21/68 (31%), Positives = 31/68 (46%), Gaps = 2/68 (3%)

Query  75   GWKVEYWSEEACLELAHEVDASGT--FAAAFEKLPYAVLKSDFCRYLVLFGRGGVYSDLD  132
             +     S++    L      S T  F  A+  LP  + KSD  RY +L+  GG+Y D D
Sbjct  17   DYCYVVLSDDLDFALDINFLKSDTPWFLEAYSLLPLFIAKSDLLRYAILYKYGGIYLDTD  76

Query  133  VHLVQPLP  140
            V  ++ L 
Sbjct  77   VIPLKSLN  84



Lambda      K        H        a         alpha
   0.322    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 718819868


Query= TCONS_00000116

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00000117

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00006405

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00006406

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398274 pfam04488, Gly_transf_sug, Glycosyltransferase sugar-b...  62.4    1e-12


>CDD:398274 pfam04488, Gly_transf_sug, Glycosyltransferase sugar-binding 
region containing DXD motif.  The DXD motif is a short conserved 
motif found in many families of glycosyltransferases, which 
add a range of different sugars to other sugars, phosphates 
and proteins. DXD-containing glycosyltransferases all use 
nucleoside diphosphate sugars as donors and require divalent 
cations, usually manganese. The DXD motif is expected to 
play a carbohydrate binding role in sugar-nucleoside diphosphate 
and manganese dependent glycosyltransferases.
Length=93

 Score = 62.4 bits (152),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 21/68 (31%), Positives = 31/68 (46%), Gaps = 2/68 (3%)

Query  75   GWKVEYWSEEACLELAHEVDASGT--FAAAFEKLPYAVLKSDFCRYLVLFGRGGVYSDLD  132
             +     S++    L      S T  F  A+  LP  + KSD  RY +L+  GG+Y D D
Sbjct  17   DYCYVVLSDDLDFALDINFLKSDTPWFLEAYSLLPLFIAKSDLLRYAILYKYGGIYLDTD  76

Query  133  VHLVQPLP  140
            V  ++ L 
Sbjct  77   VIPLKSLN  84



Lambda      K        H        a         alpha
   0.322    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 718819868


Query= TCONS_00006407

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00006408

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.145    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00000119

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00000120

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.145    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00006410

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398274 pfam04488, Gly_transf_sug, Glycosyltransferase sugar-b...  62.4    1e-12


>CDD:398274 pfam04488, Gly_transf_sug, Glycosyltransferase sugar-binding 
region containing DXD motif.  The DXD motif is a short conserved 
motif found in many families of glycosyltransferases, which 
add a range of different sugars to other sugars, phosphates 
and proteins. DXD-containing glycosyltransferases all use 
nucleoside diphosphate sugars as donors and require divalent 
cations, usually manganese. The DXD motif is expected to 
play a carbohydrate binding role in sugar-nucleoside diphosphate 
and manganese dependent glycosyltransferases.
Length=93

 Score = 62.4 bits (152),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 21/68 (31%), Positives = 31/68 (46%), Gaps = 2/68 (3%)

Query  75   GWKVEYWSEEACLELAHEVDASGT--FAAAFEKLPYAVLKSDFCRYLVLFGRGGVYSDLD  132
             +     S++    L      S T  F  A+  LP  + KSD  RY +L+  GG+Y D D
Sbjct  17   DYCYVVLSDDLDFALDINFLKSDTPWFLEAYSLLPLFIAKSDLLRYAILYKYGGIYLDTD  76

Query  133  VHLVQPLP  140
            V  ++ L 
Sbjct  77   VIPLKSLN  84



Lambda      K        H        a         alpha
   0.322    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 718819868


Query= TCONS_00000121

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00006411

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00000122

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00000124

Length=298


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00000123

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00000125

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00006412

Length=298


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00000126

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00000128

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00000127

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00006414

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00006413

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00000129

Length=514


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00006415

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00006417

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00006416

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00000132

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00000131

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00000130

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00006418

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00006419

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00006420

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00000133

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00006421

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00000135

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00006422

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00006423

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00000137

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00000136

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00000143

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00006424

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00006425

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00000139

Length=360


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00006426

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00000134

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00000138

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00006427

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00000140

Length=298


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00000142

Length=377


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 447362496


Query= TCONS_00000141

Length=421


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00006428

Length=1969


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2461437448


Query= TCONS_00000145

Length=1954


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2441672158


Query= TCONS_00000146

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0794    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00000147

Length=163
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  59.2    5e-12


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 59.2 bits (144),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 49/118 (42%), Gaps = 9/118 (8%)

Query  22   QTIIVTGSNVGLGLEAARHFVRLNAATVILAVRNRPAGEAAKASIQASHPDSATSVEVWD  81
            +  +VTG++ G+G   A+   +   A V+L  R+    EA    + A             
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEG-AKVVLVDRSEEKLEAVAKELGA----LGGKALFIQ  55

Query  82   LDLASYASVLAFAEKV-SSLPRLDVLLCNASIS---TSSFQLAEAHERTLTVNVISTV  135
             D+   A V A  E+    L RLD+L+ NA I+     S    E  ER + VN+    
Sbjct  56   GDVTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVF  113



Lambda      K        H        a         alpha
   0.321    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00006429

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461232 pfam04229, GrpB, GrpB protein. This family has been su...  214     3e-71


>CDD:461232 pfam04229, GrpB, GrpB protein.  This family has been suggested 
to belong to the nucleotidyltransferase superfamily. It occurs 
at the C-terminus of dephospho-CoA kinase (CoaE) in a number 
of cases, where it plays a role in the proper folding 
of the enzyme.
Length=161

 Score = 214 bits (547),  Expect = 3e-71, Method: Composition-based stats.
 Identities = 70/166 (42%), Positives = 87/166 (52%), Gaps = 8/166 (5%)

Query  96   PIEIVDYDPSWPTTFASIAQRIRSALGATALSVSHVGSTSVPGLPAKAIIDVDLVVPDPT  155
            P+E+V YDP WP  F     R+R+ALG  AL + H+GSTSVPGL AK IID+ + V D  
Sbjct  1    PVELVPYDPEWPAQFEREKARLRAALGDNALRIEHIGSTSVPGLAAKPIIDILVEVEDLA  60

Query  156  AEDEYAPALEAAGFQFLFREPNWYEHRFFGLA---EPYANVHVFGPGAAELSRHQRFREW  212
             ED   PALEAAG  +L  EP     RFF          ++HV   G+ E  RH  FR++
Sbjct  61   DEDSLVPALEAAG--YLRGEPGIPGRRFFRKGYDPGRTHHLHVREAGSPEWRRHLLFRDY  118

Query  213  LVSHPADRELYVQAKREAARQSQEKGESVQGYNLRKERVIEEIMVR  258
            L +HP     Y   KRE A Q     +    Y   K   I EI+ R
Sbjct  119  LRAHPEAAAEYAALKRELAAQY---PDDRDAYTDAKTPFIREILKR  161



Lambda      K        H        a         alpha
   0.317    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00000148

Length=194
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461232 pfam04229, GrpB, GrpB protein. This family has been su...  210     9e-71


>CDD:461232 pfam04229, GrpB, GrpB protein.  This family has been suggested 
to belong to the nucleotidyltransferase superfamily. It occurs 
at the C-terminus of dephospho-CoA kinase (CoaE) in a number 
of cases, where it plays a role in the proper folding 
of the enzyme.
Length=161

 Score = 210 bits (536),  Expect = 9e-71, Method: Composition-based stats.
 Identities = 70/166 (42%), Positives = 87/166 (52%), Gaps = 8/166 (5%)

Query  23   PIEIVDYDPSWPTTFASIAQRIRSALGATALSVSHVGSTSVPGLPAKAIIDVDLVVPDPT  82
            P+E+V YDP WP  F     R+R+ALG  AL + H+GSTSVPGL AK IID+ + V D  
Sbjct  1    PVELVPYDPEWPAQFEREKARLRAALGDNALRIEHIGSTSVPGLAAKPIIDILVEVEDLA  60

Query  83   AEDEYAPALEAAGFQFLFREPNWYEHRFFGLA---EPYANVHVFGPGAAELSRHQRFREW  139
             ED   PALEAAG  +L  EP     RFF          ++HV   G+ E  RH  FR++
Sbjct  61   DEDSLVPALEAAG--YLRGEPGIPGRRFFRKGYDPGRTHHLHVREAGSPEWRRHLLFRDY  118

Query  140  LVSHPADRELYVQAKREAARQSQEKGESVQGYNLRKERVIEEIMVR  185
            L +HP     Y   KRE A Q     +    Y   K   I EI+ R
Sbjct  119  LRAHPEAAAEYAALKRELAAQY---PDDRDAYTDAKTPFIREILKR  161



Lambda      K        H        a         alpha
   0.317    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00000149

Length=359
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  189     6e-58


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 189 bits (481),  Expect = 6e-58, Method: Composition-based stats.
 Identities = 94/335 (28%), Positives = 148/335 (44%), Gaps = 22/335 (7%)

Query  34   LGARISSIFVIFITSTVFTLFPVVAQRLPQWRIPHHVYLFGRYFGTGVIVATAFIHLLDP  93
            L  +I +IF I I S +  L P++  ++ + R    +      F +GV++ TAF+HLL  
Sbjct  1    LLLKIYAIFAILIISLIGGLLPLLVPKISKLRPSSKLLSLLLAFASGVLLGTAFLHLLPE  60

Query  94   AYQSIGPGTCIGMSGAWGEYSWCAAIVLSSVILVFLLDVGAEVYVEWKYSV----PREAN  149
            A +++     + +S     + +   IVL   +LV L++     Y                
Sbjct  61   ALEALES---LCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHL  117

Query  150  ATATFITQPACSSPHESSD--RLTATEPSSPTGGKDLYPRADELSVASERAFRQDIA---  204
            AT   ++    +   E  D   L   +  S       +    +          + +A   
Sbjct  118  ATVKSVSNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQR  177

Query  205  -AFLVLEFGIIFHSVIIGLNLGVA--GDEFAALYPVLVFHQSFEGLGIGARMSALHFGRR  261
               ++LE GII HS   GL LGV+   D   +L+  ++FH+  EGLG+GA +    F R+
Sbjct  178  VRAILLELGIILHSFFEGLALGVSSSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRK  237

Query  262  RWLPWILCLAYGLTTPVAIAIGLGVRTSYSPGSRTALIVQGVLDALSAGILIYSGLVELL  321
            +    +L L + LTTP+ I IG+GV +     S  A I  G+L A SAG  +Y  LVELL
Sbjct  238  KA--VLLALLFALTTPLGILIGIGVSS--IGNSPGADITSGILLAFSAGTFLYVALVELL  293

Query  322  ARDFLFDPCRTKRRGQILYMLGCTLLGAGMMALIG  356
              + L +          L  L   LLG  +MAL+ 
Sbjct  294  PHELLRNK---SSEKLSLLQLLALLLGFALMALLA  325



Lambda      K        H        a         alpha
   0.325    0.140    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00000150

Length=500


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 619252994


Query= TCONS_00000151

Length=500


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 619252994


Query= TCONS_00006430

Length=287


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00000152

Length=355


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00000153

Length=563


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 703875588


Query= TCONS_00000154

Length=605


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 766641564


Query= TCONS_00006431

Length=586


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 738247432


Query= TCONS_00000155

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00000156

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459974 pfam00875, DNA_photolyase, DNA photolyase. This domain...  143     4e-42


>CDD:459974 pfam00875, DNA_photolyase, DNA photolyase.  This domain binds 
a light harvesting cofactor.
Length=161

 Score = 143 bits (364),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 90/162 (56%), Gaps = 11/162 (7%)

Query  95   VVFWFKSDLRLYDNRALRMAYETAKGCNIPLIGLYILSPQDLTAHLLSPARVDLILRTLH  154
            V+ WF+ DLRL+DN AL  A  +      PLI ++IL P     H L  AR   +L +L 
Sbjct  1    VLVWFRRDLRLHDNPALAAAAASGA----PLIPVFILDPA---FHDLGAARRWFLLESLA  53

Query  155  QLKRDLSELDIPLYMETQEIRKNIPQRIVDLCQQWGANHLYANLEYEVDELRREAKLVRL  214
             L  +L E  I L +   +    +P+    L ++ GA+ ++AN +YE  E RR+A +   
Sbjct  54   DLDEELRERGIRLVVRRGDPADVLPE----LAKELGASAVFANRDYEPYERRRDAAVAEA  109

Query  215  CAKNGIKFETAHDACVVPPGQVTSQQGKQYAVYSPWYRTWVA  256
              + G++  +     +VPPG+V +++GK Y V++P+++ W+A
Sbjct  110  LREAGVEVHSFDGHTLVPPGEVRTKKGKPYRVFTPFWKAWLA  151



Lambda      K        H        a         alpha
   0.318    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00000157

Length=337


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00006435

Length=452


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00006436

Length=452


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00006434

Length=452


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00000158

Length=772


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 986593056


Query= TCONS_00000159

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00006437

Length=560


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 699392304


Query= TCONS_00000160

Length=457
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459720 pfam00225, Kinesin, Kinesin motor domain                   161     2e-46


>CDD:459720 pfam00225, Kinesin, Kinesin motor domain.  
Length=326

 Score = 161 bits (410),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 103/447 (23%), Positives = 159/447 (36%), Gaps = 137/447 (31%)

Query  9    RWRPLAPSE--ANTPEIARTQHAHPTSNTSALSLTPPPAHKLSRPWKSESAFTRIFTASD  66
            R RPL   E    +  I   +     +  S+           +        F ++F    
Sbjct  1    RVRPLNEREKERGSSVIVSVESVDSETVESSHLTNKNRTKTFT--------FDKVFDPEA  52

Query  67   NNKAVFEAVVAPTLPRVLNGQSCNFFAYGHSGSGKSHTIIGYDFEHPDEFGLCLSAARAL  126
              + V+E    P +  VL G +   FAYG +GSGK++T+ G D E P   G+   A   L
Sbjct  53   TQEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGSD-EQP---GIIPRALEDL  108

Query  127  YEHLDQRNATAGMNEPEKKFLLGLRMYELRKNTAFDLLNDRCKCH----IREGPDGKTHL  182
            ++ + +        +   +F + +   E+      DLL+   K      IRE P    ++
Sbjct  109  FDRIQKT-------KERSEFSVKVSYLEIYNEKIRDLLSPSNKNKRKLRIREDPKKGVYV  161

Query  183  RGETETLADGKVRVRPIVTKACSSFDEFHAQLLAGIGRRATGSSTVHDQSSRTHAVFEVE  242
            +G TE      V V        SS +E    L  G   R   ++ ++++SSR+HA+F + 
Sbjct  162  KGLTE------VEV--------SSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTIT  207

Query  243  IVTRELLAARDAVVERQSELVPVGKRATDVYLEENLKGLIRMPDGTFAPNPEYQINQAAI  302
            +                                                           
Sbjct  208  V-----------------------------------------------------------  208

Query  303  DEAEAKKAEFESYVRKAEEHVEAVKRSCRHTCLGGKFVFVDLAGSEYYHDKRTVSTCRAK  362
             E   +    E  V+                   GK   VDLAGSE           RA 
Sbjct  209  -EQRNRSTGGEESVKT------------------GKLNLVDLAGSE-----------RAS  238

Query  363  QTP----QEQQEGRQINTDLLSLKEVIRAMAQKQS-RIPFRSSPLTMVLREHFLTGEGDG  417
            +T     Q  +E   IN  L +L  VI A+A K+S  IP+R S LT +L++      G  
Sbjct  239  KTGAAGGQRLKEAANINKSLSALGNVISALADKKSKHIPYRDSKLTRLLQDSL----GGN  294

Query  418  GFSAMILTASPSSEQYTATIDTLKYGN  444
              + MI   SPSS  Y  T+ TL++ +
Sbjct  295  SKTLMIANISPSSSNYEETLSTLRFAS  321



Lambda      K        H        a         alpha
   0.317    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 562869368


Query= TCONS_00000161

Length=457
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459720 pfam00225, Kinesin, Kinesin motor domain                   161     2e-46


>CDD:459720 pfam00225, Kinesin, Kinesin motor domain.  
Length=326

 Score = 161 bits (410),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 103/447 (23%), Positives = 159/447 (36%), Gaps = 137/447 (31%)

Query  9    RWRPLAPSE--ANTPEIARTQHAHPTSNTSALSLTPPPAHKLSRPWKSESAFTRIFTASD  66
            R RPL   E    +  I   +     +  S+           +        F ++F    
Sbjct  1    RVRPLNEREKERGSSVIVSVESVDSETVESSHLTNKNRTKTFT--------FDKVFDPEA  52

Query  67   NNKAVFEAVVAPTLPRVLNGQSCNFFAYGHSGSGKSHTIIGYDFEHPDEFGLCLSAARAL  126
              + V+E    P +  VL G +   FAYG +GSGK++T+ G D E P   G+   A   L
Sbjct  53   TQEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGSD-EQP---GIIPRALEDL  108

Query  127  YEHLDQRNATAGMNEPEKKFLLGLRMYELRKNTAFDLLNDRCKCH----IREGPDGKTHL  182
            ++ + +        +   +F + +   E+      DLL+   K      IRE P    ++
Sbjct  109  FDRIQKT-------KERSEFSVKVSYLEIYNEKIRDLLSPSNKNKRKLRIREDPKKGVYV  161

Query  183  RGETETLADGKVRVRPIVTKACSSFDEFHAQLLAGIGRRATGSSTVHDQSSRTHAVFEVE  242
            +G TE      V V        SS +E    L  G   R   ++ ++++SSR+HA+F + 
Sbjct  162  KGLTE------VEV--------SSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTIT  207

Query  243  IVTRELLAARDAVVERQSELVPVGKRATDVYLEENLKGLIRMPDGTFAPNPEYQINQAAI  302
            +                                                           
Sbjct  208  V-----------------------------------------------------------  208

Query  303  DEAEAKKAEFESYVRKAEEHVEAVKRSCRHTCLGGKFVFVDLAGSEYYHDKRTVSTCRAK  362
             E   +    E  V+                   GK   VDLAGSE           RA 
Sbjct  209  -EQRNRSTGGEESVKT------------------GKLNLVDLAGSE-----------RAS  238

Query  363  QTP----QEQQEGRQINTDLLSLKEVIRAMAQKQS-RIPFRSSPLTMVLREHFLTGEGDG  417
            +T     Q  +E   IN  L +L  VI A+A K+S  IP+R S LT +L++      G  
Sbjct  239  KTGAAGGQRLKEAANINKSLSALGNVISALADKKSKHIPYRDSKLTRLLQDSL----GGN  294

Query  418  GFSAMILTASPSSEQYTATIDTLKYGN  444
              + MI   SPSS  Y  T+ TL++ +
Sbjct  295  SKTLMIANISPSSSNYEETLSTLRFAS  321



Lambda      K        H        a         alpha
   0.317    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 562869368


Query= TCONS_00000162

Length=457
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459720 pfam00225, Kinesin, Kinesin motor domain                   161     2e-46


>CDD:459720 pfam00225, Kinesin, Kinesin motor domain.  
Length=326

 Score = 161 bits (410),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 103/447 (23%), Positives = 159/447 (36%), Gaps = 137/447 (31%)

Query  9    RWRPLAPSE--ANTPEIARTQHAHPTSNTSALSLTPPPAHKLSRPWKSESAFTRIFTASD  66
            R RPL   E    +  I   +     +  S+           +        F ++F    
Sbjct  1    RVRPLNEREKERGSSVIVSVESVDSETVESSHLTNKNRTKTFT--------FDKVFDPEA  52

Query  67   NNKAVFEAVVAPTLPRVLNGQSCNFFAYGHSGSGKSHTIIGYDFEHPDEFGLCLSAARAL  126
              + V+E    P +  VL G +   FAYG +GSGK++T+ G D E P   G+   A   L
Sbjct  53   TQEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGSD-EQP---GIIPRALEDL  108

Query  127  YEHLDQRNATAGMNEPEKKFLLGLRMYELRKNTAFDLLNDRCKCH----IREGPDGKTHL  182
            ++ + +        +   +F + +   E+      DLL+   K      IRE P    ++
Sbjct  109  FDRIQKT-------KERSEFSVKVSYLEIYNEKIRDLLSPSNKNKRKLRIREDPKKGVYV  161

Query  183  RGETETLADGKVRVRPIVTKACSSFDEFHAQLLAGIGRRATGSSTVHDQSSRTHAVFEVE  242
            +G TE      V V        SS +E    L  G   R   ++ ++++SSR+HA+F + 
Sbjct  162  KGLTE------VEV--------SSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTIT  207

Query  243  IVTRELLAARDAVVERQSELVPVGKRATDVYLEENLKGLIRMPDGTFAPNPEYQINQAAI  302
            +                                                           
Sbjct  208  V-----------------------------------------------------------  208

Query  303  DEAEAKKAEFESYVRKAEEHVEAVKRSCRHTCLGGKFVFVDLAGSEYYHDKRTVSTCRAK  362
             E   +    E  V+                   GK   VDLAGSE           RA 
Sbjct  209  -EQRNRSTGGEESVKT------------------GKLNLVDLAGSE-----------RAS  238

Query  363  QTP----QEQQEGRQINTDLLSLKEVIRAMAQKQS-RIPFRSSPLTMVLREHFLTGEGDG  417
            +T     Q  +E   IN  L +L  VI A+A K+S  IP+R S LT +L++      G  
Sbjct  239  KTGAAGGQRLKEAANINKSLSALGNVISALADKKSKHIPYRDSKLTRLLQDSL----GGN  294

Query  418  GFSAMILTASPSSEQYTATIDTLKYGN  444
              + MI   SPSS  Y  T+ TL++ +
Sbjct  295  SKTLMIANISPSSSNYEETLSTLRFAS  321



Lambda      K        H        a         alpha
   0.317    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 562869368


Query= TCONS_00006438

Length=560


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 699392304


Query= TCONS_00000164

Length=412


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0775    0.140     1.90     42.6     43.6 

Effective search space used: 501729466


Query= TCONS_00006439

Length=560


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 699392304


Query= TCONS_00000166

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV. Th...  110     5e-29


>CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV.  The D-amino 
acid transferases (D-AAT) are required by bacteria to catalyze 
the synthesis of D-glutamic acid and D-alanine, which 
are essential constituents of bacterial cell wall and are the 
building block for other D-amino acids. Despite the difference 
in the structure of the substrates, D-AATs and L-ATTs 
have strong similarity.
Length=221

 Score = 110 bits (277),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 94/243 (39%), Gaps = 23/243 (9%)

Query  64   QAYEGLKAFRHPSGQISIFRPDRNAARLRRSAEFVSMP-PVPEDLFLQCVKLAVAANAEF  122
              +E L+ +        IF  D + ARLRRSA+ + +P P  E+   + ++  + AN   
Sbjct  1    GVFETLRVYNG-----KIFFLDEHLARLRRSAKLLGIPLPFDEEDLRKIIEELLKANGLG  55

Query  123  VPPHETGAAMYIRPLLFGSSAQLGLSPPDAYTFVVFVMPTGVYHGVHAVDALILEDFDRA  182
            V          +R  +       GL   D  T  +FV          +    ++    R 
Sbjct  56   VG--------RLRLTVSRGPGGFGLPTSD-PTLAIFVSAL--PPPPESKKKGVISSLVRR  104

Query  183  APQGTGSAKVGGNYAPVLRHSARAAAEGFGITLHLDSRTRSEIDEFSTSAFIGVRRDGDK  242
             P          NY   +     A A+G    L LD      + E STS    + + G  
Sbjct  105  NPPSPLPGAKTLNYLENVLARREAKAQGADDALLLDEDG--NVTEGSTSNVF-LVKGGTL  161

Query  243  VTLVQPDSTNVIDSVTARSVCEIGERLFGFAVEKRRIGYDEIKEFHEVIAAGTAAALVPI  302
             T   P  + ++  +T +++ ++ + L G  VE+R I   +++E  E     +   + P+
Sbjct  162  YT--PPLESGILPGITRQALLDLAKAL-GLEVEERPITLADLQEADEAFLTNSLRGVTPV  218

Query  303  RSI  305
             SI
Sbjct  219  SSI  221



Lambda      K        H        a         alpha
   0.320    0.137    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00006440

Length=560


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 699392304


Query= TCONS_00000167

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  103     8e-28
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          59.2    2e-11


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 103 bits (260),  Expect = 8e-28, Method: Composition-based stats.
 Identities = 39/122 (32%), Positives = 56/122 (46%), Gaps = 21/122 (17%)

Query  27   DAIIHITHCTIGGADLHLYDGELSDMLAQGDILGHEAIGTVEDAGEAVRSISPGDRVMIL  86
            + ++ +    I G+DLH+Y G     +    ILGHE  G V + G  V  +  GDRV++ 
Sbjct  2    EVLVKVKAAGICGSDLHIYKGGNP-PVKLPLILGHEFAGEVVEVGPGVTGLKVGDRVVVE  60

Query  87   PVIACGHCEFCKRQEFSLCDTTNPSREMESAYGHRVAGMLGFTRLYGGYPGAQAEYVRVP  146
            P+I CG CE+C+   ++LC                    LG+ R      G  AEYV VP
Sbjct  61   PLIPCGKCEYCREGRYNLCPN---------------GRFLGYDR-----DGGFAEYVVVP  100

Query  147  HA  148
              
Sbjct  101  ER  102


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 59.2 bits (144),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 64/153 (42%), Gaps = 29/153 (19%)

Query  196  PVGLSVQRLAVLRGATKVYAVDKDAGRLQIAEGFGMIPVDVGVHSEVGDY---ILSM-EP  251
             VGL+  +LA   GA KV AVD    +L++A+  G    D  ++ +  D    I  +   
Sbjct  1    GVGLAAIQLAKAAGA-KVIAVDGSEEKLELAKELGA---DHVINPKETDLVEEIKELTGG  56

Query  252  RGLDCAVEASGFRSTQKPQHAAMRAIGLEHDSSDTVSAMIKATRKGGHLALLGDFFYRTN  311
            +G+D   +  G                    S  T+   +K  R GG + ++G       
Sbjct  57   KGVDVVFDCVG--------------------SPATLEQALKLLRPGGRVVVVG-LPGGPL  95

Query  312  DFPIGPLMEKGLTIRGGQVNSQKYHPLLLDMVT  344
              P+ PL+ K LTI G  + S +  P  LD++ 
Sbjct  96   PLPLAPLLLKELTILGSFLGSPEEFPEALDLLA  128



Lambda      K        H        a         alpha
   0.322    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00000168

Length=676


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 859802570


Query= TCONS_00000170

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.129    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00000171

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00000172

Length=1165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461930 pfam06479, Ribonuc_2-5A, Ribonuclease 2-5A. This domai...  195     1e-58
CDD:459660 pfam00069, Pkinase, Protein kinase domain                  88.8    3e-20
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            86.4    5e-19


>CDD:461930 pfam06479, Ribonuc_2-5A, Ribonuclease 2-5A.  This domain is a 
endoribonuclease. Specifically it cleaves an intron from Hac1 
mRNA in humans, which causes it to be much more efficiently 
translated.
Length=127

 Score = 195 bits (498),  Expect = 1e-58, Method: Composition-based stats.
 Identities = 67/130 (52%), Positives = 91/130 (70%), Gaps = 3/130 (2%)

Query  1032  RLSFLCDVSDHFEFEPRDPPSDALLCLESVACRVMGPEMDFLRLLPKDFKDNLGKQRKYT  1091
             RL+FL DVSD FE EPRDPPS  L  LES A  V+G   D+ + L K+F DNLGK RKY 
Sbjct  1     RLAFLQDVSDRFEKEPRDPPSPLLQLLESGASEVVGG--DWTKKLDKEFVDNLGKYRKYD  58

Query  1092  GSKMLDLLRALRNKRNHYNDMPAHLKAHIGGLPEGYLNFWTVRFPSLLMSCHSVIVELRL  1151
             G  + DLLRA+RNK++HY ++P  +K  +G LP+G+L+++T RFP+LL+  + V+ E  L
Sbjct  59    GDSVRDLLRAIRNKKHHYRELPEEVKEILGPLPDGFLSYFTSRFPNLLIHVYKVVKET-L  117

Query  1152  TKIDRFKRYF  1161
                D FK+Y+
Sbjct  118   KDEDHFKKYY  127


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 88.8 bits (221),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 70/325 (22%), Positives = 110/325 (34%), Gaps = 127/325 (39%)

Query  716   VLGHGSHGTVVYRG--SFDGRDVAVKRMLVEFYD-----IASHEVGLLQESDDHNNVIRY  768
              LG GS GTV Y+      G+ VA+K++  E            E+ +L++ + H N++R 
Sbjct  6     KLGSGSFGTV-YKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLN-HPNIVRL  63

Query  769   --FCREQAAGFLYIALELCPA-SLQDLIERPGDYPQLVQGGLDMPD---ILRQIIAGVRY  822
                  ++    LY+ LE     SL DL+          +G     +   I++QI+ G+  
Sbjct  64    YDAFEDK--DNLYLVLEYVEGGSLFDLLSE--------KGAFSEREAKFIMKQILEGLES  113

Query  823   LHSLKIVHRDLKPQNILVAMPRGRTGSRSLRLLISDFGLCKKLDDNQSSFRATTAHAAGT  882
               SL                                                      GT
Sbjct  114   GSSLT--------------------------------------------------TFVGT  123

Query  883   SGWRAPELLVDDDNRSAIQGGESQHTESSEPAVVDPQTNRRATRAIDIFSLGCVFYYVLT  942
               + APE+L           G + +                    +D++SLGC+ Y +LT
Sbjct  124   PWYMAPEVL-----------GGNPY-----------------GPKVDVWSLGCILYELLT  155

Query  943   RGSHPF-DKNGKFMREANIVKGNFNLDELQRLGDYAFEADDLIRSMLSLDPRKRLAPLCS  1001
              G  PF   NG  + E  I +     +    L +   EA DL++ +L  DP K       
Sbjct  156   -GKPPFPGINGNEIYELIIDQPYAFPELPSNLSE---EAKDLLKKLLKKDPSK-------  204

Query  1002  SLAFRLFTDLFPRPDASAVLMHPFF  1026
                         R  A+  L HP+F
Sbjct  205   ------------RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 86.4 bits (215),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 61/200 (31%), Positives = 81/200 (41%), Gaps = 49/200 (25%)

Query  716  VLGHGSHGTVVYRG------SFDGRDVAVKRMLVEFYDIASHEVGLLQESD-----DHNN  764
             LG G+ G V Y+G            VAVK  L E  D    E   L+E+      DH N
Sbjct  6    KLGEGAFGEV-YKGTLKGEGENTKIKVAVK-TLKEGADEEERE-DFLEEASIMKKLDHPN  62

Query  765  VIRY--FCREQAAGFLYIALELCPA-SLQDLIERPGDYPQLVQGGLDMPDIL---RQIIA  818
            +++    C +     LYI  E  P   L D + +           L + D+L    QI  
Sbjct  63   IVKLLGVCTQGEP--LYIVTEYMPGGDLLDFLRKHK-------RKLTLKDLLSMALQIAK  113

Query  819  GVRYLHSLKIVHRDLKPQNILVAMPRGRTGSRSLRLLISDFGLCKKLDDNQSSFRATTAH  878
            G+ YL S   VHRDL  +N LV        S +L + ISDFGL + + D+         +
Sbjct  114  GMEYLESKNFVHRDLAARNCLV--------SENLVVKISDFGLSRDIYDDDY-------Y  158

Query  879  AAGTSG-----WRAPELLVD  893
                 G     W APE L D
Sbjct  159  RKRGGGKLPIKWMAPESLKD  178



Lambda      K        H        a         alpha
   0.319    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1491182184


Query= TCONS_00006442

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 7...  325     4e-113


>CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76.  Family 
of alpha-1,6-mannanases.
Length=348

 Score = 325 bits (835),  Expect = 4e-113, Method: Composition-based stats.
 Identities = 123/208 (59%), Positives = 145/208 (70%), Gaps = 3/208 (1%)

Query  1    MMSNYTGNQTGQIPGKLPDT--WWEGGAMFMTLIQYWFWTGDTSYNEVTTQGMLWQKG-N  57
            +M  Y GN+ G  PG LPD   WWE GAMF  LI YW++TGD++YN++ TQ +L+Q G N
Sbjct  13   LMDYYNGNEPGGTPGMLPDPYYWWEAGAMFGALIDYWYYTGDSTYNDLITQALLYQAGPN  72

Query  58   NDYFPSNYSNYLGNDDQVFWGLAAMTAAELNFPEEDGQPSWVSLAQGVFNTQVPRWDTST  117
             DY P+N S   GNDDQ FWGLAAMTAAE NFP    +PSW++LAQ VFNTQ  RWDT T
Sbjct  73   YDYMPANQSTTEGNDDQGFWGLAAMTAAERNFPPPTDEPSWLALAQAVFNTQASRWDTET  132

Query  118  CHGGLRWQISTYQDGYRTKNAISNGGLFQLAARLARYTNNETYSQWAERIWDWSATTPLL  177
            C GGLRWQI  +  GY  KN+ISNG LFQLAARLARYT N+TY  WAE++WDWS    L+
Sbjct  133  CGGGLRWQIFPWNSGYDYKNSISNGCLFQLAARLARYTGNQTYLDWAEKVWDWSVDVGLI  192

Query  178  KESDWTIADTTSPETGCTDHGDLQWTYN  205
             + DW + D       CTD   LQWTYN
Sbjct  193  DDDDWLVYDGADVNDNCTDINKLQWTYN  220



Lambda      K        H        a         alpha
   0.316    0.131    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00006443

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 7...  348     5e-122


>CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76.  Family 
of alpha-1,6-mannanases.
Length=348

 Score = 348 bits (896),  Expect = 5e-122, Method: Composition-based stats.
 Identities = 134/222 (60%), Positives = 158/222 (71%), Gaps = 3/222 (1%)

Query  1    MMSNYTGNQTGQIPGKLPDT--WWEGGAMFMTLIQYWFWTGDTSYNEVTTQGMLWQKG-N  57
            +M  Y GN+ G  PG LPD   WWE GAMF  LI YW++TGD++YN++ TQ +L+Q G N
Sbjct  13   LMDYYNGNEPGGTPGMLPDPYYWWEAGAMFGALIDYWYYTGDSTYNDLITQALLYQAGPN  72

Query  58   NDYFPSNYSNYLGNDDQVFWGLAAMTAAELNFPEEDGQPSWVSLAQGVFNTQVPRWDTST  117
             DY P+N S   GNDDQ FWGLAAMTAAE NFP    +PSW++LAQ VFNTQ  RWDT T
Sbjct  73   YDYMPANQSTTEGNDDQGFWGLAAMTAAERNFPPPTDEPSWLALAQAVFNTQASRWDTET  132

Query  118  CHGGLRWQISTYQDGYRTKNAISNGGLFQLAARLARYTNNETYSQWAERIWDWSATTPLL  177
            C GGLRWQI  +  GY  KN+ISNG LFQLAARLARYT N+TY  WAE++WDWS    L+
Sbjct  133  CGGGLRWQIFPWNSGYDYKNSISNGCLFQLAARLARYTGNQTYLDWAEKVWDWSVDVGLI  192

Query  178  KESDWTIADTTSPETGCTDHGDLQWTYNYGTYISGAAYMYNF  219
             + DW + D       CTD   LQWTYN GTY+SGAAYMYN+
Sbjct  193  DDDDWLVYDGADVNDNCTDINKLQWTYNQGTYLSGAAYMYNY  234



Lambda      K        H        a         alpha
   0.316    0.131    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00000174

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 7...  315     4e-109


>CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76.  Family 
of alpha-1,6-mannanases.
Length=348

 Score = 315 bits (808),  Expect = 4e-109, Method: Composition-based stats.
 Identities = 119/194 (61%), Positives = 141/194 (73%), Gaps = 1/194 (1%)

Query  1    MFMTLIQYWFWTGDTSYNEVTTQGMLWQKG-NNDYFPSNYSNYLGNDDQVFWGLAAMTAA  59
            MF  LI YW++TGD++YN++ TQ +L+Q G N DY P+N S   GNDDQ FWGLAAMTAA
Sbjct  41   MFGALIDYWYYTGDSTYNDLITQALLYQAGPNYDYMPANQSTTEGNDDQGFWGLAAMTAA  100

Query  60   ELNFPEEDGQPSWVSLAQGVFNTQVPRWDTSTCHGGLRWQISTYQDGYRTKNAISNGGLF  119
            E NFP    +PSW++LAQ VFNTQ  RWDT TC GGLRWQI  +  GY  KN+ISNG LF
Sbjct  101  ERNFPPPTDEPSWLALAQAVFNTQASRWDTETCGGGLRWQIFPWNSGYDYKNSISNGCLF  160

Query  120  QLAARLARYTNNETYSQWAERIWDWSATTPLLKESDWTIADTTSPETGCTDHGDLQWTYN  179
            QLAARLARYT N+TY  WAE++WDWS    L+ + DW + D       CTD   LQWTYN
Sbjct  161  QLAARLARYTGNQTYLDWAEKVWDWSVDVGLIDDDDWLVYDGADVNDNCTDINKLQWTYN  220

Query  180  YGTYISGAAYMYNF  193
             GTY+SGAAYMYN+
Sbjct  221  QGTYLSGAAYMYNY  234



Lambda      K        H        a         alpha
   0.316    0.131    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00000173

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 7...  291     4e-100


>CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76.  Family 
of alpha-1,6-mannanases.
Length=348

 Score = 291 bits (747),  Expect = 4e-100, Method: Composition-based stats.
 Identities = 108/180 (60%), Positives = 128/180 (71%), Gaps = 1/180 (1%)

Query  1    MFMTLIQYWFWTGDTSYNEVTTQGMLWQKG-NNDYFPSNYSNYLGNDDQVFWGLAAMTAA  59
            MF  LI YW++TGD++YN++ TQ +L+Q G N DY P+N S   GNDDQ FWGLAAMTAA
Sbjct  41   MFGALIDYWYYTGDSTYNDLITQALLYQAGPNYDYMPANQSTTEGNDDQGFWGLAAMTAA  100

Query  60   ELNFPEEDGQPSWVSLAQGVFNTQVPRWDTSTCHGGLRWQISTYQDGYRTKNAISNGGLF  119
            E NFP    +PSW++LAQ VFNTQ  RWDT TC GGLRWQI  +  GY  KN+ISNG LF
Sbjct  101  ERNFPPPTDEPSWLALAQAVFNTQASRWDTETCGGGLRWQIFPWNSGYDYKNSISNGCLF  160

Query  120  QLAARLARYTNNETYSQWAERIWDWSATTPLLKESDWTIADTTSPETGCTDHGDLQWTYN  179
            QLAARLARYT N+TY  WAE++WDWS    L+ + DW + D       CTD   LQWTYN
Sbjct  161  QLAARLARYTGNQTYLDWAEKVWDWSVDVGLIDDDDWLVYDGADVNDNCTDINKLQWTYN  220



Lambda      K        H        a         alpha
   0.317    0.131    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00006444

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 7...  325     4e-113


>CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76.  Family 
of alpha-1,6-mannanases.
Length=348

 Score = 325 bits (835),  Expect = 4e-113, Method: Composition-based stats.
 Identities = 123/208 (59%), Positives = 145/208 (70%), Gaps = 3/208 (1%)

Query  1    MMSNYTGNQTGQIPGKLPDT--WWEGGAMFMTLIQYWFWTGDTSYNEVTTQGMLWQKG-N  57
            +M  Y GN+ G  PG LPD   WWE GAMF  LI YW++TGD++YN++ TQ +L+Q G N
Sbjct  13   LMDYYNGNEPGGTPGMLPDPYYWWEAGAMFGALIDYWYYTGDSTYNDLITQALLYQAGPN  72

Query  58   NDYFPSNYSNYLGNDDQVFWGLAAMTAAELNFPEEDGQPSWVSLAQGVFNTQVPRWDTST  117
             DY P+N S   GNDDQ FWGLAAMTAAE NFP    +PSW++LAQ VFNTQ  RWDT T
Sbjct  73   YDYMPANQSTTEGNDDQGFWGLAAMTAAERNFPPPTDEPSWLALAQAVFNTQASRWDTET  132

Query  118  CHGGLRWQISTYQDGYRTKNAISNGGLFQLAARLARYTNNETYSQWAERIWDWSATTPLL  177
            C GGLRWQI  +  GY  KN+ISNG LFQLAARLARYT N+TY  WAE++WDWS    L+
Sbjct  133  CGGGLRWQIFPWNSGYDYKNSISNGCLFQLAARLARYTGNQTYLDWAEKVWDWSVDVGLI  192

Query  178  KESDWTIADTTSPETGCTDHGDLQWTYN  205
             + DW + D       CTD   LQWTYN
Sbjct  193  DDDDWLVYDGADVNDNCTDINKLQWTYN  220



Lambda      K        H        a         alpha
   0.316    0.131    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00006445

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 7...  348     5e-122


>CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76.  Family 
of alpha-1,6-mannanases.
Length=348

 Score = 348 bits (896),  Expect = 5e-122, Method: Composition-based stats.
 Identities = 134/222 (60%), Positives = 158/222 (71%), Gaps = 3/222 (1%)

Query  1    MMSNYTGNQTGQIPGKLPDT--WWEGGAMFMTLIQYWFWTGDTSYNEVTTQGMLWQKG-N  57
            +M  Y GN+ G  PG LPD   WWE GAMF  LI YW++TGD++YN++ TQ +L+Q G N
Sbjct  13   LMDYYNGNEPGGTPGMLPDPYYWWEAGAMFGALIDYWYYTGDSTYNDLITQALLYQAGPN  72

Query  58   NDYFPSNYSNYLGNDDQVFWGLAAMTAAELNFPEEDGQPSWVSLAQGVFNTQVPRWDTST  117
             DY P+N S   GNDDQ FWGLAAMTAAE NFP    +PSW++LAQ VFNTQ  RWDT T
Sbjct  73   YDYMPANQSTTEGNDDQGFWGLAAMTAAERNFPPPTDEPSWLALAQAVFNTQASRWDTET  132

Query  118  CHGGLRWQISTYQDGYRTKNAISNGGLFQLAARLARYTNNETYSQWAERIWDWSATTPLL  177
            C GGLRWQI  +  GY  KN+ISNG LFQLAARLARYT N+TY  WAE++WDWS    L+
Sbjct  133  CGGGLRWQIFPWNSGYDYKNSISNGCLFQLAARLARYTGNQTYLDWAEKVWDWSVDVGLI  192

Query  178  KESDWTIADTTSPETGCTDHGDLQWTYNYGTYISGAAYMYNF  219
             + DW + D       CTD   LQWTYN GTY+SGAAYMYN+
Sbjct  193  DDDDWLVYDGADVNDNCTDINKLQWTYNQGTYLSGAAYMYNY  234



Lambda      K        H        a         alpha
   0.316    0.131    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00000175

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00000176

Length=628
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  198     4e-61


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 198 bits (505),  Expect = 4e-61, Method: Composition-based stats.
 Identities = 76/152 (50%), Positives = 96/152 (63%), Gaps = 7/152 (5%)

Query  480  ILHTTMGDIHLRLFPQAAPKAVENFVTHARNGYYNNTIFHRVIRKFMIQGGDPLGDGTGG  539
            I    +G I + LF   APK VENF+   + G+Y+ T FHRVI  FM+QGGDP G G GG
Sbjct  1    IETNGLGRIVIELFGDKAPKTVENFLQLCKKGFYDGTTFHRVIPGFMVQGGDPTGTGGGG  60

Query  540  ESIWGGEFEDEF--SSLKHDKPYTLSMANAG--PNTNGSQFFITTEKTPWLDGKHTIFGR  595
            +SI      DE     LKH K   LSMAN G  PN+NGSQFFIT    P LDGK+T+FG+
Sbjct  61   KSI--FPIPDEIFPLLLKH-KRGALSMANTGPAPNSNGSQFFITLGPAPHLDGKYTVFGK  117

Query  596  AVQGLDVIHKIENTKTYKEKPEQDIKIVSITV  627
             V+G+DV+ KIE   T  ++P + +KI+S  V
Sbjct  118  VVEGMDVLEKIEKVPTDGDRPVKPVKILSCGV  149



Lambda      K        H        a         alpha
   0.316    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789012650


Query= TCONS_00006446

Length=556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  196     4e-61


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 196 bits (501),  Expect = 4e-61, Method: Composition-based stats.
 Identities = 76/152 (50%), Positives = 96/152 (63%), Gaps = 7/152 (5%)

Query  408  ILHTTMGDIHLRLFPQAAPKAVENFVTHARNGYYNNTIFHRVIRKFMIQGGDPLGDGTGG  467
            I    +G I + LF   APK VENF+   + G+Y+ T FHRVI  FM+QGGDP G G GG
Sbjct  1    IETNGLGRIVIELFGDKAPKTVENFLQLCKKGFYDGTTFHRVIPGFMVQGGDPTGTGGGG  60

Query  468  ESIWGGEFEDEF--SSLKHDKPYTLSMANAG--PNTNGSQFFITTEKTPWLDGKHTIFGR  523
            +SI      DE     LKH K   LSMAN G  PN+NGSQFFIT    P LDGK+T+FG+
Sbjct  61   KSI--FPIPDEIFPLLLKH-KRGALSMANTGPAPNSNGSQFFITLGPAPHLDGKYTVFGK  117

Query  524  AVQGLDVIHKIENTKTYKEKPEQDIKIVSITV  555
             V+G+DV+ KIE   T  ++P + +KI+S  V
Sbjct  118  VVEGMDVLEKIEKVPTDGDRPVKPVKILSCGV  149



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 693414592


Query= TCONS_00006448

Length=556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  197     3e-61


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 197 bits (502),  Expect = 3e-61, Method: Composition-based stats.
 Identities = 76/152 (50%), Positives = 96/152 (63%), Gaps = 7/152 (5%)

Query  408  ILHTTMGDIHLRLFPQAAPKAVENFVTHARNGYYNNTIFHRVIRKFMIQGGDPLGDGTGG  467
            I    +G I + LF   APK VENF+   + G+Y+ T FHRVI  FM+QGGDP G G GG
Sbjct  1    IETNGLGRIVIELFGDKAPKTVENFLQLCKKGFYDGTTFHRVIPGFMVQGGDPTGTGGGG  60

Query  468  ESIWGGEFEDEF--SSLKHDKPYTLSMANAG--PNTNGSQFFITTEKTPWLDGKHTIFGR  523
            +SI      DE     LKH K   LSMAN G  PN+NGSQFFIT    P LDGK+T+FG+
Sbjct  61   KSI--FPIPDEIFPLLLKH-KRGALSMANTGPAPNSNGSQFFITLGPAPHLDGKYTVFGK  117

Query  524  AVQGLDVIHKIENTKTYKEKPEQDIKIVSITV  555
             V+G+DV+ KIE   T  ++P + +KI+S  V
Sbjct  118  VVEGMDVLEKIEKVPTDGDRPVKPVKILSCGV  149



Lambda      K        H        a         alpha
   0.318    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 693414592


Query= TCONS_00000177

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  197     2e-61


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 197 bits (504),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 76/152 (50%), Positives = 96/152 (63%), Gaps = 7/152 (5%)

Query  426  ILHTTMGDIHLRLFPQAAPKAVENFVTHARNGYYNNTIFHRVIRKFMIQGGDPLGDGTGG  485
            I    +G I + LF   APK VENF+   + G+Y+ T FHRVI  FM+QGGDP G G GG
Sbjct  1    IETNGLGRIVIELFGDKAPKTVENFLQLCKKGFYDGTTFHRVIPGFMVQGGDPTGTGGGG  60

Query  486  ESIWGGEFEDEF--SSLKHDKPYTLSMANAG--PNTNGSQFFITTEKTPWLDGKHTIFGR  541
            +SI      DE     LKH K   LSMAN G  PN+NGSQFFIT    P LDGK+T+FG+
Sbjct  61   KSI--FPIPDEIFPLLLKH-KRGALSMANTGPAPNSNGSQFFITLGPAPHLDGKYTVFGK  117

Query  542  AVQGLDVIHKIENTKTYKEKPEQDIKIVSITV  573
             V+G+DV+ KIE   T  ++P + +KI+S  V
Sbjct  118  VVEGMDVLEKIEKVPTDGDRPVKPVKILSCGV  149



Lambda      K        H        a         alpha
   0.319    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 720314296


Query= TCONS_00000178

Length=556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  197     3e-61


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 197 bits (502),  Expect = 3e-61, Method: Composition-based stats.
 Identities = 76/152 (50%), Positives = 96/152 (63%), Gaps = 7/152 (5%)

Query  408  ILHTTMGDIHLRLFPQAAPKAVENFVTHARNGYYNNTIFHRVIRKFMIQGGDPLGDGTGG  467
            I    +G I + LF   APK VENF+   + G+Y+ T FHRVI  FM+QGGDP G G GG
Sbjct  1    IETNGLGRIVIELFGDKAPKTVENFLQLCKKGFYDGTTFHRVIPGFMVQGGDPTGTGGGG  60

Query  468  ESIWGGEFEDEF--SSLKHDKPYTLSMANAG--PNTNGSQFFITTEKTPWLDGKHTIFGR  523
            +SI      DE     LKH K   LSMAN G  PN+NGSQFFIT    P LDGK+T+FG+
Sbjct  61   KSI--FPIPDEIFPLLLKH-KRGALSMANTGPAPNSNGSQFFITLGPAPHLDGKYTVFGK  117

Query  524  AVQGLDVIHKIENTKTYKEKPEQDIKIVSITV  555
             V+G+DV+ KIE   T  ++P + +KI+S  V
Sbjct  118  VVEGMDVLEKIEKVPTDGDRPVKPVKILSCGV  149



Lambda      K        H        a         alpha
   0.318    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 693414592


Query= TCONS_00000179

Length=556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  197     3e-61


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 197 bits (502),  Expect = 3e-61, Method: Composition-based stats.
 Identities = 76/152 (50%), Positives = 96/152 (63%), Gaps = 7/152 (5%)

Query  408  ILHTTMGDIHLRLFPQAAPKAVENFVTHARNGYYNNTIFHRVIRKFMIQGGDPLGDGTGG  467
            I    +G I + LF   APK VENF+   + G+Y+ T FHRVI  FM+QGGDP G G GG
Sbjct  1    IETNGLGRIVIELFGDKAPKTVENFLQLCKKGFYDGTTFHRVIPGFMVQGGDPTGTGGGG  60

Query  468  ESIWGGEFEDEF--SSLKHDKPYTLSMANAG--PNTNGSQFFITTEKTPWLDGKHTIFGR  523
            +SI      DE     LKH K   LSMAN G  PN+NGSQFFIT    P LDGK+T+FG+
Sbjct  61   KSI--FPIPDEIFPLLLKH-KRGALSMANTGPAPNSNGSQFFITLGPAPHLDGKYTVFGK  117

Query  524  AVQGLDVIHKIENTKTYKEKPEQDIKIVSITV  555
             V+G+DV+ KIE   T  ++P + +KI+S  V
Sbjct  118  VVEGMDVLEKIEKVPTDGDRPVKPVKILSCGV  149



Lambda      K        H        a         alpha
   0.318    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 693414592


Query= TCONS_00006449

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00000180

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  181     1e-57
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  152     7e-46


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 181 bits (462),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 77/182 (42%), Positives = 109/182 (60%), Gaps = 3/182 (2%)

Query  8    LITGASSGFGVVLAEAVLKAGHRVVATARNPTKAAQTYPQIESLGG--TWLQLDVT-RPD  64
            L+TGASSG G  +A+ + K G +VV   R+  K      ++ +LGG   ++Q DVT R  
Sbjct  4    LVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTDRAQ  63

Query  65   TKETVEDAIRKQGRIDVVVNNAGYALLGSVEDMSEEEIHQQINTNVYGPMRVIKAALPFM  124
             K  VE A+ + GR+D++VNNAG   LG   ++S+E+  + I+ N+ G   + +A LP M
Sbjct  64   VKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVLPAM  123

Query  125  RAQKSGTIVNISSIAGLQAQPSCSLYAASKFALEGFSESLSKEVAPFNIRVLIVEPGAFR  184
                 G IVNISS+AGL   P  S Y+ASK A+ GF+ SL+ E+AP  IRV  V PG   
Sbjct  124  IKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVAPGGVD  183

Query  185  TN  186
            T+
Sbjct  184  TD  185


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 152 bits (387),  Expect = 7e-46, Method: Composition-based stats.
 Identities = 66/175 (38%), Positives = 95/175 (54%), Gaps = 5/175 (3%)

Query  14   SGFGVVLAEAVLKAGHRVVATARNPTKAAQTYPQIESLGGTWLQLDVTRPDT-KETVEDA  72
            SG G  +A A+ + G  VV T  N   A +     E LG   L  DVT  +  +  V  A
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVAAA  65

Query  73   IRKQGRIDVVVNNAGYA--LLGSVEDMSEEEIHQQINTNVYGPMRVIKAALPFMRAQKSG  130
            + K GR+D++VNNAG+A  L G   D S E+  + ++ N+Y    + KAALP M+    G
Sbjct  66   VEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLMKEG--G  123

Query  131  TIVNISSIAGLQAQPSCSLYAASKFALEGFSESLSKEVAPFNIRVLIVEPGAFRT  185
            +IVN+SSI   +  P+ + Y A+K ALE  +  L+ E+ P  IRV  + PG  +T
Sbjct  124  SIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAISPGPIKT  178



Lambda      K        H        a         alpha
   0.316    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00000181

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  85.7    2e-21
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          61.1    3e-12


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 85.7 bits (213),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 50/108 (46%), Gaps = 10/108 (9%)

Query  31   EVFVEISHAGLCGTD------RLFKHK-GIALGHEGAGTVRDVGSAVTTFKVGDKVGFGW  83
            EV V++  AG+CG+D           K  + LGHE AG V +VG  VT  KVGD+V    
Sbjct  2    EVLVKVKAAGICGSDLHIYKGGNPPVKLPLILGHEFAGEVVEVGPGVTGLKVGDRVVVEP  61

Query  84   VRKVCGHCDFCVSGHDQYCQQREQYGKGNTEIGAFATHAVWHESMLVK  131
            +   CG C++C  G    C      G      G FA + V  E  LV 
Sbjct  62   LI-PCGKCEYCREGRYNLCPNGRFLGYDRD--GGFAEYVVVPERNLVP  106


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 61.1 bits (149),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 34/133 (26%), Positives = 53/133 (40%), Gaps = 21/133 (16%)

Query  173  GLGHMAIQFASKLGCDVVVFSSSAAKKDEAKGLGANEFHTLENGAVGDAVRPVKHLLWCG  232
            G+G  AIQ A   G  V+    S  K + AK LGA+  H + N    D V  +K L   G
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELAKELGAD--HVI-NPKETDLVEEIKEL--TG  55

Query  233  NEPPDFS-------KLVPPSLSA----GDLSM-----QQPPLPVMPLISNGIRVQGSAVA  276
             +  D           +  +L      G + +        PLP+ PL+   + + GS + 
Sbjct  56   GKGVDVVFDCVGSPATLEQALKLLRPGGRVVVVGLPGGPLPLPLAPLLLKELTILGSFLG  115

Query  277  SRVSVRKMLRFVS  289
            S     + L  ++
Sbjct  116  SPEEFPEALDLLA  128



Lambda      K        H        a         alpha
   0.321    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00000182

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:437666 pfam19834, DUF6314, Family of unknown function (DUF631...  86.2    3e-22


>CDD:437666 pfam19834, DUF6314, Family of unknown function (DUF6314).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and eukaryotes. Proteins 
in this family are typically between 138 and 177 amino 
acids in length.
Length=132

 Score = 86.2 bits (214),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 67/192 (35%), Gaps = 64/192 (33%)

Query  27   RWSLLRTLQSDNPRDINGELRGTASFHPLRHSSAASDHRDVVYREEGELPKTFGPGLRWT  86
            RW L RT+  D      G   GTA F P        D   ++YREEG L    G  L  T
Sbjct  4    RWRLERTI-VDRRAGPTGTFTGTARFTPD-------DDDGLLYREEGTLRLGGGRPLPAT  55

Query  87   KKYIWRQGENGGISVWFVKVKPTAKQPEAQEEEDEADYLFHNFDFEGQGQDEAETVDAKE  146
            ++Y++R  + GGI V+F   +                  FH  D  G G           
Sbjct  56   RRYLYRLED-GGIEVFFADGRL-----------------FHRLDLRGGG-----------  86

Query  147  STFVTPPVPPLVPSEEDTAVIMARGDHLCINDMYRTAYAFRVRPESGEVVSWSSRHVVKG  206
                                  A   HLC  D+YR  Y F   P       W+ R  V G
Sbjct  87   ---------------------RAEAHHLCGPDLYRVRYDFSDWPR------WTVRWRVTG  119

Query  207  PKKDQDIVNFYQ  218
            P+KD  +   Y+
Sbjct  120  PRKDYVLTTRYR  131



Lambda      K        H        a         alpha
   0.315    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00006450

Length=343


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00000183

Length=327


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00000184

Length=327


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00000185

Length=380


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00006451

Length=380


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00000186

Length=141
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428104 pfam04750, Far-17a_AIG1, FAR-17a/AIG1-like protein. Th...  107     7e-31


>CDD:428104 pfam04750, Far-17a_AIG1, FAR-17a/AIG1-like protein.  This family 
includes the hamster androgen-induced FAR-17a protein, and 
its human homolog, the AIG1 protein. The function of these 
proteins is unknown. This family also includes homologous 
regions from a number of other metazoan proteins.
Length=206

 Score = 107 bits (270),  Expect = 7e-31, Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 57/123 (46%), Gaps = 14/123 (11%)

Query  21   FSALVHLFGLASFIGSFKFMHENPNRANEAYGWHFQYLTVIGLALSTLTFAVALLAD---  77
            F  L HL  L  +   F + H+ P   N  YG  F+YLT I L L  + F +A+LAD   
Sbjct  1    FRLLFHLSVLCWYAALFYYFHQYPRLPNRHYGGKFKYLTFINLVLQAVFFGLAVLADFST  60

Query  78   ---LTLSARLFLVKNLLSICSAPMEVLISVLYWGLRMIDERLV--------VPDWAYIPM  126
                 L     L   L ++ + P+ V +SVL+WGL +ID  LV        +P W    M
Sbjct  61   EQLRKLRKLHKLRDFLFAVLAFPVGVFVSVLFWGLYLIDPELVYPKLLDEIIPSWLNHGM  120

Query  127  HAG  129
            H  
Sbjct  121  HTY  123



Lambda      K        H        a         alpha
   0.327    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00000189

Length=229
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400743 pfam08566, Pam17, Mitochondrial import protein Pam17. ...  237     5e-81


>CDD:400743 pfam08566, Pam17, Mitochondrial import protein Pam17.  The presequence 
translocase-associated motor (PAM) drives the completion 
of preprotein translocation into the mitochondrial matrix. 
The Pam17 subunit is required for formation of a stable 
complex between cochaperones Pam16 and Pam18 and promotes 
the association of Pam16-Pam18 with the presequence translocase. 
Mitochondria lacking Pam17 are selectively impaired in 
the import of matrix proteins.
Length=165

 Score = 237 bits (608),  Expect = 5e-81, Method: Composition-based stats.
 Identities = 81/147 (55%), Positives = 102/147 (69%), Gaps = 1/147 (1%)

Query  83   NSTAANASRAEVPKLDWNSFFKLRASRRRYTLASSIIASMASTIIGVQILSEQDLESLGA  142
            +++A+ A+    PKL WN FFKLR SRRR  L SSI  ++  T  G   LS  +++    
Sbjct  5    STSASAAAAPAQPKLTWNEFFKLRKSRRRIQLVSSIPTALGGTGGGAAYLSTGEIDP-TQ  63

Query  143  QVMGLDPFVVLGLATATCGAVGWLAGPFLGNAIWRLVYRKYKPAFLMREKEFFDRIKRFR  202
            Q+ GLDPFVVLGLAT  CGA+GWL GP LGNA+++L++RK       +EKEF  RIK+ R
Sbjct  64   QIFGLDPFVVLGLATLACGALGWLLGPSLGNAVFKLLHRKKLKQMEAKEKEFLARIKKNR  123

Query  203  VDPSSNSIANPVPDYYGEKIGSVQGYR  229
            VDPSS S +NPVPDYYGEKIGS+  YR
Sbjct  124  VDPSSQSFSNPVPDYYGEKIGSLADYR  150



Lambda      K        H        a         alpha
   0.322    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00000187

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400743 pfam08566, Pam17, Mitochondrial import protein Pam17. ...  148     1e-46


>CDD:400743 pfam08566, Pam17, Mitochondrial import protein Pam17.  The presequence 
translocase-associated motor (PAM) drives the completion 
of preprotein translocation into the mitochondrial matrix. 
The Pam17 subunit is required for formation of a stable 
complex between cochaperones Pam16 and Pam18 and promotes 
the association of Pam16-Pam18 with the presequence translocase. 
Mitochondria lacking Pam17 are selectively impaired in 
the import of matrix proteins.
Length=165

 Score = 148 bits (377),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 52/105 (50%), Positives = 69/105 (66%), Gaps = 1/105 (1%)

Query  83   NSTAANASRAEVPKLDWNSFFKLRASRRRYTLASSIIASMASTIIGVQILSEQDLESLGA  142
            +++A+ A+    PKL WN FFKLR SRRR  L SSI  ++  T  G   LS  +++    
Sbjct  5    STSASAAAAPAQPKLTWNEFFKLRKSRRRIQLVSSIPTALGGTGGGAAYLSTGEIDP-TQ  63

Query  143  QVMGLDPFVVLGLATATCGAVGWLAGPFLGNAIWRLVYRKYKPAF  187
            Q+ GLDPFVVLGLAT  CGA+GWL GP LGNA+++L++RK     
Sbjct  64   QIFGLDPFVVLGLATLACGALGWLLGPSLGNAVFKLLHRKKLKQM  108



Lambda      K        H        a         alpha
   0.323    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00006452

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428104 pfam04750, Far-17a_AIG1, FAR-17a/AIG1-like protein. Th...  138     6e-42


>CDD:428104 pfam04750, Far-17a_AIG1, FAR-17a/AIG1-like protein.  This family 
includes the hamster androgen-induced FAR-17a protein, and 
its human homolog, the AIG1 protein. The function of these 
proteins is unknown. This family also includes homologous 
regions from a number of other metazoan proteins.
Length=206

 Score = 138 bits (349),  Expect = 6e-42, Method: Composition-based stats.
 Identities = 61/175 (35%), Positives = 82/175 (47%), Gaps = 13/175 (7%)

Query  21   FSALVHLFGLASFIGSFKFMHENPNRANEAYGWHFQYLTVIGLALSTLTFAVALLAD---  77
            F  L HL  L  +   F + H+ P   N  YG  F+YLT I L L  + F +A+LAD   
Sbjct  1    FRLLFHLSVLCWYAALFYYFHQYPRLPNRHYGGKFKYLTFINLVLQAVFFGLAVLADFST  60

Query  78   ---LTLSARLFLVKNLLSICSAPMEVLISVLYWGLRMIDERLVVPDWAY--IPMHADIGF  132
                 L     L   L ++ + P+ V +SVL+WGL +ID  LV P      IP   + G 
Sbjct  61   EQLRKLRKLHKLRDFLFAVLAFPVGVFVSVLFWGLYLIDPELVYPKLLDEIIPSWLNHGM  120

Query  133  HA--VPAIVLLIDLLLLSPPWTISIVPALGLSSAIALGYWVWIERCYKYNGWCPY  185
            H   +P I+L + L     P   S    L LS+A    Y++WI   Y YNG   Y
Sbjct  121  HTYPIPFILLEMFLTKHQYP---SRSAGLILSAAFVTLYFIWIHYVYYYNGVWVY  172



Lambda      K        H        a         alpha
   0.328    0.140    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00000188

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428104 pfam04750, Far-17a_AIG1, FAR-17a/AIG1-like protein. Th...  122     3e-35


>CDD:428104 pfam04750, Far-17a_AIG1, FAR-17a/AIG1-like protein.  This family 
includes the hamster androgen-induced FAR-17a protein, and 
its human homolog, the AIG1 protein. The function of these 
proteins is unknown. This family also includes homologous 
regions from a number of other metazoan proteins.
Length=206

 Score = 122 bits (309),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 57/123 (46%), Gaps = 14/123 (11%)

Query  21   FSALVHLFGLASFIGSFKFMHENPNRANEAYGWHFQYLTVIGLALSTLTFAVALLAD---  77
            F  L HL  L  +   F + H+ P   N  YG  F+YLT I L L  + F +A+LAD   
Sbjct  1    FRLLFHLSVLCWYAALFYYFHQYPRLPNRHYGGKFKYLTFINLVLQAVFFGLAVLADFST  60

Query  78   ---LTLSARLFLVKNLLSICSAPMEVLISVLYWGLRMIDERLV--------VPDWAYIPM  126
                 L     L   L ++ + P+ V +SVL+WGL +ID  LV        +P W    M
Sbjct  61   EQLRKLRKLHKLRDFLFAVLAFPVGVFVSVLFWGLYLIDPELVYPKLLDEIIPSWLNHGM  120

Query  127  HAG  129
            H  
Sbjct  121  HTY  123



Lambda      K        H        a         alpha
   0.327    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00000190

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00000191

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400743 pfam08566, Pam17, Mitochondrial import protein Pam17. ...  271     5e-94


>CDD:400743 pfam08566, Pam17, Mitochondrial import protein Pam17.  The presequence 
translocase-associated motor (PAM) drives the completion 
of preprotein translocation into the mitochondrial matrix. 
The Pam17 subunit is required for formation of a stable 
complex between cochaperones Pam16 and Pam18 and promotes 
the association of Pam16-Pam18 with the presequence translocase. 
Mitochondria lacking Pam17 are selectively impaired in 
the import of matrix proteins.
Length=165

 Score = 271 bits (695),  Expect = 5e-94, Method: Composition-based stats.
 Identities = 91/162 (56%), Positives = 115/162 (71%), Gaps = 1/162 (1%)

Query  83   NSTAANASRAEVPKLDWNSFFKLRASRRRYTLASSIIASMASTIIGVQILSEQDLESLGA  142
            +++A+ A+    PKL WN FFKLR SRRR  L SSI  ++  T  G   LS  +++    
Sbjct  5    STSASAAAAPAQPKLTWNEFFKLRKSRRRIQLVSSIPTALGGTGGGAAYLSTGEIDP-TQ  63

Query  143  QVMGLDPFVVLGLATATCGAVGWLAGPFLGNAIWRLVYRKYKPAFLMREKEFFDRIKRFR  202
            Q+ GLDPFVVLGLAT  CGA+GWL GP LGNA+++L++RK       +EKEF  RIK+ R
Sbjct  64   QIFGLDPFVVLGLATLACGALGWLLGPSLGNAVFKLLHRKKLKQMEAKEKEFLARIKKNR  123

Query  203  VDPSSNSIANPVPDYYGEKIGSVQGYRQWLKDQRAYNRKRRS  244
            VDPSS S +NPVPDYYGEKIGS+  YRQWL+DQRA+NRK + 
Sbjct  124  VDPSSQSFSNPVPDYYGEKIGSLADYRQWLRDQRAFNRKAKE  165



Lambda      K        H        a         alpha
   0.323    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00000192

Length=426


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00000194

Length=426


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00000193

Length=426


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00000196

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00000195

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00000198

Length=221


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00000197

Length=360


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00000199

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00000200

Length=303


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00006458

Length=361


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00006459

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00006457

Length=260


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00006460

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00000201

Length=361


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00006461

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00000202

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            122     1e-31
CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         64.6    1e-11


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 122 bits (309),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 92/391 (24%), Positives = 149/391 (38%), Gaps = 49/391 (13%)

Query  82   MSSITFLSPLASSMFAPAAS-YVAVDLGVTNETLLSFSVTIFLLGYTFGPLILAPLSEIY  140
            +    FL+ L  S+  PA    +A DLG++  T +   +T+F LGY     +   LS+ +
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGIS-PTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  141  GRRIVLSFANWFFVVWLVGCALAPNIESLIVFRFLCGIGGCGCITLGAGLIADLFPVEQR  200
            GRR VL      F + L+    A ++  L+V R L G+G          LIAD FP E+R
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  201  GMATSIWSLGPLVGPVAGPICAGFIGESIGWRWIFWILLIASGAISFGIECLNRETCAPV  260
            G A  + S G  +G   GP+  G +    GWR  F IL I S               A +
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLL------------AAVL  167

Query  261  LIRWKTAKLAKELGRTDLRSAYEPDGQGVSVASTLKLGLMRPLQLFFKSPIVFLLSIYMS  320
            L+  +                  P+ +    A   +L L+   +   + P V  L + + 
Sbjct  168  LLLPRP----------------PPESKRPKPAEEARLSLIVAWKALLRDP-VLWLLLALL  210

Query  321  LTYGLLYLFFTTIPSVFQKQYGFSTGLSGLAYLGIGIGFFVGLALIAFTNDRILMKLTAK  380
            L     +   T +P ++Q+  G S  L+GL     G+   +G  L+   +DR+       
Sbjct  211  LFGFAFFGLLTYLP-LYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRL-------  262

Query  381  NGGKSEPEMRLPTMIFFSCFLPVSFFWYGWSAAKKAHWIVPIIGMCPFGISLMGLFMPIQ  440
                     RL   +       +       + +     +  ++     G     +F  + 
Sbjct  263  -----GRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLL----LGFGFGLVFPALN  313

Query  441  TYVIDCYPA-YAASANAILTATRSLVVALVP  470
              V D  P     +A+ +     SL  AL P
Sbjct  314  ALVSDLAPKEERGTASGLYNTAGSLGGALGP  344


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 64.6 bits (158),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 86/412 (21%), Positives = 144/412 (35%), Gaps = 50/412 (12%)

Query  113  TLLSFSVTIFLLGYTFGPLILAPLSEIYGRRIVLSFANWFFVVWLVGCALAP---NIESL  169
             L    V+IF +G   G L    L + +GR+  L  AN  FV+  V    A    ++  L
Sbjct  46   VLSGLIVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQL  105

Query  170  IVFRFLCGIGGCGCITLGAGL-IADLFPVEQRGMATSIWSLGPLVGPVAGPICA---GFI  225
            IV R L GI G G  ++ A + I+++ P + RG   S++ L    G +   I        
Sbjct  106  IVGRVLVGI-GVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKT  164

Query  226  GESIGWRWIFWILLIASGAISFGIECLNRETCAPVLIRWKTAKLAKELGRTDLRSAYEPD  285
              S GWR    + L+ +  +  G+     E+      RW   K   E  R  L       
Sbjct  165  SNSDGWRIPLGLQLVPALLLIIGL-LFLPES-----PRWLVEKGRLEEAREVLAKLRGVP  218

Query  286  GQGVSVASTLKLGLMRPLQLFFKSPIVFLLSIYMS--LTYGLLYLF---FTTI------P  334
                 +   +K  L    +    S      +      L  G++       T I       
Sbjct  219  DVDRELD-EIKDSLEAGQEAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYS  277

Query  335  SVFQKQYGFSTGLSGLAYLGIGIGFFVGLALIAFTNDRILMKLTAKNGGKSEPEMRLPTM  394
            +   +  G S     L  + +G+  FV   +  F  DR   +     G           M
Sbjct  278  TTIFENLGLSDSF--LVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLG--------AAGM  327

Query  395  IFFSCFLPVSFFWYGWSAAKKAHWIVPIIGMC----PFGISLMGLFMPIQTYVI--DCYP  448
                  L +        +      IV I+ +      F +    +      +VI  + +P
Sbjct  328  AICFVILGIVALLG--VSKSDWAGIVAIVFIALFIAFFAMGWGPVP-----WVIVSELFP  380

Query  449  -AYAASANAILTATRSLVVALVPLAGPSMFNSLGLGWGNSLLGFLALAFVPI  499
             +  + A A+ TA   L   L+    P + +++GLG+   +   L + F+  
Sbjct  381  LSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIF  432



Lambda      K        H        a         alpha
   0.326    0.141    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 654076512


Query= TCONS_00000203

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.146    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00000204

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403197 pfam11905, DUF3425, Domain of unknown function (DUF342...  167     2e-51


>CDD:403197 pfam11905, DUF3425, Domain of unknown function (DUF3425).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
120 to 143 amino acids in length.
Length=128

 Score = 167 bits (426),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 56/128 (44%), Positives = 73/128 (57%), Gaps = 2/128 (2%)

Query  281  YVYSKWRVSPNPATFTRLAPFQQPLMTQIQQGHPITLDLIIWQQLRVNIIRNW--TKYDF  338
            Y +S+WR+SP+  T+ RL PF +P   QI   HP  +D + W  LR N+IR W   + D 
Sbjct  1    YHFSRWRISPSQETYARLPPFLRPTEEQITIPHPPWIDFLPWPTLRDNLIRAWHQEEIDE  60

Query  339  AELTGYLGCCAKVRWPWGKDMLERDADNNLQIRQEFFEVFTHESGWGLTSEFIDKYPKLM  398
             E       C  VRWPWG+ +LE +  N L+I   F      ESGW LT EFI KYP+L+
Sbjct  61   DEFFRDYVSCGLVRWPWGESILEDNEPNELEISPAFASTPWDESGWELTEEFIKKYPELV  120

Query  399  EGLDVEAL  406
            +G D E L
Sbjct  121  DGEDGELL  128



Lambda      K        H        a         alpha
   0.320    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00000205

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00000206

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00000207

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00000208

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00006462

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.125    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00000209

Length=101
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432408 pfam12223, DUF3602, Protein of unknown function (DUF36...  54.2    7e-12


>CDD:432408 pfam12223, DUF3602, Protein of unknown function (DUF3602).  This 
domain family is found in eukaryotes, and is typically between 
78 and 89 amino acids in length.
Length=80

 Score = 54.2 bits (131),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 30/52 (58%), Gaps = 3/52 (6%)

Query  37  TFTTGRGGSGNMVQYDPERPEIARELQDVESPPQRVEEA--PHHTGRGGVAN  86
            F+TGRGG+GN+     ERP ++   +DVE    R +E    +H GRGG  N
Sbjct  30  AFSTGRGGAGNIHSSPGERPTLSF-DEDVEPEAARRKEDAEDYHVGRGGAGN  80



Lambda      K        H        a         alpha
   0.307    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00006463

Length=134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432408 pfam12223, DUF3602, Protein of unknown function (DUF36...  56.1    4e-12


>CDD:432408 pfam12223, DUF3602, Protein of unknown function (DUF3602).  This 
domain family is found in eukaryotes, and is typically between 
78 and 89 amino acids in length.
Length=80

 Score = 56.1 bits (136),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 23/75 (31%), Positives = 32/75 (43%), Gaps = 7/75 (9%)

Query  18  STANPTSAKDLITPTIKQD----TFTTGRGGSGNMVQYDPERPEIARELQDVESPPQRVE  73
           +                 D     F+TGRGG+GN+     ERP ++   +DVE    R +
Sbjct  7   TVYTDGEIVRTGPQGSHTDGSRTAFSTGRGGAGNIHSSPGERPTLSF-DEDVEPEAARRK  65

Query  74  EA--PHHTGRGGVAN  86
           E    +H GRGG  N
Sbjct  66  EDAEDYHVGRGGAGN  80



Lambda      K        H        a         alpha
   0.307    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00006464

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.125    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00006465

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00000211

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00000210

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0791    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00000213

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00000212

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00000214

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00006467

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00006466

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00006469

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00006468

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00000215

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00000218

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00000217

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00000216

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00006470

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00000219

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00000222

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00000221

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00006471

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00000220

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00006472

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00000224

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00000223

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00000225

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463342 pfam11754, Velvet, Velvet factor. The velvet factor is...  216     7e-72


>CDD:463342 pfam11754, Velvet, Velvet factor.  The velvet factor is conserved 
in many fungal species and is found to have gained different 
roles depending on the organism's need, expanding the 
conserved role in developmental programmes. The velvet factor 
orthologues can be adapted to the fungal-specific life cycle 
and may be involved in diverse functions such as sclerotia 
formation and toxin production, as in A. parasiticus, nutrition-dependent 
sporulation, as in A. fumigatus, or the microconidia-to-macroconidia 
ratio and cell wall formation, as in 
the heterothallic fungus Fusarium verticilloides.
Length=238

 Score = 216 bits (553),  Expect = 7e-72, Method: Composition-based stats.
 Identities = 84/157 (54%), Positives = 100/157 (64%), Gaps = 14/157 (9%)

Query  47   YGTNPQASYYPPYYAGGQMPPAGMSPAQQPVPAG------PGGMFTRNLIGSLSASAFRL  100
            Y    Q+   PP       PP+      +P+  G      P GM+TRNLIGSL ASAFRL
Sbjct  90   YPPPSQSPTSPPTPQSSTAPPSAPPSQARPIATGRVQTNPPSGMYTRNLIGSLVASAFRL  149

Query  101  TDPDNKIGVWFILQDLSVRTEGTFRLKMSFVNVGTQSGDSTNNTPVINHGSAPVLASVFS  160
             DP+ K G++F+  DLSVRTEGTFRL+ S +N+G    +          GSAPVLA VFS
Sbjct  150  PDPEGKPGIFFVFPDLSVRTEGTFRLRFSLMNLGATVNEGG--------GSAPVLAEVFS  201

Query  161  EPFQVFSAKKFPGVIESTQLSKCFALQGIKIPIRKDG  197
            +PF V+SAKKFPG+ EST LSK FA QGIKIPIRKDG
Sbjct  202  DPFTVYSAKKFPGMPESTPLSKHFAEQGIKIPIRKDG  238



Lambda      K        H        a         alpha
   0.314    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00000228

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463342 pfam11754, Velvet, Velvet factor. The velvet factor is...  364     6e-128


>CDD:463342 pfam11754, Velvet, Velvet factor.  The velvet factor is conserved 
in many fungal species and is found to have gained different 
roles depending on the organism's need, expanding the 
conserved role in developmental programmes. The velvet factor 
orthologues can be adapted to the fungal-specific life cycle 
and may be involved in diverse functions such as sclerotia 
formation and toxin production, as in A. parasiticus, nutrition-dependent 
sporulation, as in A. fumigatus, or the microconidia-to-macroconidia 
ratio and cell wall formation, as in 
the heterothallic fungus Fusarium verticilloides.
Length=238

 Score = 364 bits (937),  Expect = 6e-128, Method: Composition-based stats.
 Identities = 151/282 (54%), Positives = 174/282 (62%), Gaps = 45/282 (16%)

Query  57   WSLQVVQQPIRARMCGFGDKDRRPITPPPCIRLIVRDAQTEKEIDINEIDTSFYVLTVDL  116
            + L+VVQQPIRARMCGFGDKDRRPI PPP ++L V D  T  E+DI+EID SF+VL VDL
Sbjct  1    YRLEVVQQPIRARMCGFGDKDRRPIDPPPIVQLRVFDFNTGSEVDIDEIDNSFFVLQVDL  60

Query  117  WNADGTSEVNLVKH-SATSPSISTAMSSSYPPPPQNLSPTYPAFTQNPYGQPVGYPQMNN  175
            W+ADGT EVNLV   SA S SIS+A S SYPPP Q  SPT P   Q+    P        
Sbjct  61   WSADGTREVNLVHSSSAPSSSISSASSGSYPPPSQ--SPTSPPTPQSSTAPP--------  110

Query  176  YYGGNAQLAYQYGTNPQASYYPPYYAGGQMPPAGMSPAQQPVPAGPGGMFTRNLIGSLSA  235
                                 PP  A         +         P GM+TRNLIGSL A
Sbjct  111  -------------------SAPPSQARPIATGRVQTNP-------PSGMYTRNLIGSLVA  144

Query  236  SAFRLTDPDNKIGVWFILQDLSVRTEGTFRLKMSFVNVGTQSGDSTNNTPVINHGSAPVL  295
            SAFRL DP+ K G++F+  DLSVRTEGTFRL+ S +N+G    +          GSAPVL
Sbjct  145  SAFRLPDPEGKPGIFFVFPDLSVRTEGTFRLRFSLMNLGATVNEGG--------GSAPVL  196

Query  296  ASVFSEPFQVFSAKKFPGVIESTQLSKCFALQGIKIPIRKDG  337
            A VFS+PF V+SAKKFPG+ EST LSK FA QGIKIPIRKDG
Sbjct  197  AEVFSDPFTVYSAKKFPGMPESTPLSKHFAEQGIKIPIRKDG  238



Lambda      K        H        a         alpha
   0.315    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00006474

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463342 pfam11754, Velvet, Velvet factor. The velvet factor is...  364     6e-128


>CDD:463342 pfam11754, Velvet, Velvet factor.  The velvet factor is conserved 
in many fungal species and is found to have gained different 
roles depending on the organism's need, expanding the 
conserved role in developmental programmes. The velvet factor 
orthologues can be adapted to the fungal-specific life cycle 
and may be involved in diverse functions such as sclerotia 
formation and toxin production, as in A. parasiticus, nutrition-dependent 
sporulation, as in A. fumigatus, or the microconidia-to-macroconidia 
ratio and cell wall formation, as in 
the heterothallic fungus Fusarium verticilloides.
Length=238

 Score = 364 bits (937),  Expect = 6e-128, Method: Composition-based stats.
 Identities = 151/282 (54%), Positives = 174/282 (62%), Gaps = 45/282 (16%)

Query  57   WSLQVVQQPIRARMCGFGDKDRRPITPPPCIRLIVRDAQTEKEIDINEIDTSFYVLTVDL  116
            + L+VVQQPIRARMCGFGDKDRRPI PPP ++L V D  T  E+DI+EID SF+VL VDL
Sbjct  1    YRLEVVQQPIRARMCGFGDKDRRPIDPPPIVQLRVFDFNTGSEVDIDEIDNSFFVLQVDL  60

Query  117  WNADGTSEVNLVKH-SATSPSISTAMSSSYPPPPQNLSPTYPAFTQNPYGQPVGYPQMNN  175
            W+ADGT EVNLV   SA S SIS+A S SYPPP Q  SPT P   Q+    P        
Sbjct  61   WSADGTREVNLVHSSSAPSSSISSASSGSYPPPSQ--SPTSPPTPQSSTAPP--------  110

Query  176  YYGGNAQLAYQYGTNPQASYYPPYYAGGQMPPAGMSPAQQPVPAGPGGMFTRNLIGSLSA  235
                                 PP  A         +         P GM+TRNLIGSL A
Sbjct  111  -------------------SAPPSQARPIATGRVQTNP-------PSGMYTRNLIGSLVA  144

Query  236  SAFRLTDPDNKIGVWFILQDLSVRTEGTFRLKMSFVNVGTQSGDSTNNTPVINHGSAPVL  295
            SAFRL DP+ K G++F+  DLSVRTEGTFRL+ S +N+G    +          GSAPVL
Sbjct  145  SAFRLPDPEGKPGIFFVFPDLSVRTEGTFRLRFSLMNLGATVNEGG--------GSAPVL  196

Query  296  ASVFSEPFQVFSAKKFPGVIESTQLSKCFALQGIKIPIRKDG  337
            A VFS+PF V+SAKKFPG+ EST LSK FA QGIKIPIRKDG
Sbjct  197  AEVFSDPFTVYSAKKFPGMPESTPLSKHFAEQGIKIPIRKDG  238



Lambda      K        H        a         alpha
   0.315    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00006475

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463342 pfam11754, Velvet, Velvet factor. The velvet factor is...  216     7e-72


>CDD:463342 pfam11754, Velvet, Velvet factor.  The velvet factor is conserved 
in many fungal species and is found to have gained different 
roles depending on the organism's need, expanding the 
conserved role in developmental programmes. The velvet factor 
orthologues can be adapted to the fungal-specific life cycle 
and may be involved in diverse functions such as sclerotia 
formation and toxin production, as in A. parasiticus, nutrition-dependent 
sporulation, as in A. fumigatus, or the microconidia-to-macroconidia 
ratio and cell wall formation, as in 
the heterothallic fungus Fusarium verticilloides.
Length=238

 Score = 216 bits (553),  Expect = 7e-72, Method: Composition-based stats.
 Identities = 84/157 (54%), Positives = 100/157 (64%), Gaps = 14/157 (9%)

Query  47   YGTNPQASYYPPYYAGGQMPPAGMSPAQQPVPAG------PGGMFTRNLIGSLSASAFRL  100
            Y    Q+   PP       PP+      +P+  G      P GM+TRNLIGSL ASAFRL
Sbjct  90   YPPPSQSPTSPPTPQSSTAPPSAPPSQARPIATGRVQTNPPSGMYTRNLIGSLVASAFRL  149

Query  101  TDPDNKIGVWFILQDLSVRTEGTFRLKMSFVNVGTQSGDSTNNTPVINHGSAPVLASVFS  160
             DP+ K G++F+  DLSVRTEGTFRL+ S +N+G    +          GSAPVLA VFS
Sbjct  150  PDPEGKPGIFFVFPDLSVRTEGTFRLRFSLMNLGATVNEGG--------GSAPVLAEVFS  201

Query  161  EPFQVFSAKKFPGVIESTQLSKCFALQGIKIPIRKDG  197
            +PF V+SAKKFPG+ EST LSK FA QGIKIPIRKDG
Sbjct  202  DPFTVYSAKKFPGMPESTPLSKHFAEQGIKIPIRKDG  238



Lambda      K        H        a         alpha
   0.314    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00000226

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463342 pfam11754, Velvet, Velvet factor. The velvet factor is...  364     6e-128


>CDD:463342 pfam11754, Velvet, Velvet factor.  The velvet factor is conserved 
in many fungal species and is found to have gained different 
roles depending on the organism's need, expanding the 
conserved role in developmental programmes. The velvet factor 
orthologues can be adapted to the fungal-specific life cycle 
and may be involved in diverse functions such as sclerotia 
formation and toxin production, as in A. parasiticus, nutrition-dependent 
sporulation, as in A. fumigatus, or the microconidia-to-macroconidia 
ratio and cell wall formation, as in 
the heterothallic fungus Fusarium verticilloides.
Length=238

 Score = 364 bits (937),  Expect = 6e-128, Method: Composition-based stats.
 Identities = 151/282 (54%), Positives = 174/282 (62%), Gaps = 45/282 (16%)

Query  57   WSLQVVQQPIRARMCGFGDKDRRPITPPPCIRLIVRDAQTEKEIDINEIDTSFYVLTVDL  116
            + L+VVQQPIRARMCGFGDKDRRPI PPP ++L V D  T  E+DI+EID SF+VL VDL
Sbjct  1    YRLEVVQQPIRARMCGFGDKDRRPIDPPPIVQLRVFDFNTGSEVDIDEIDNSFFVLQVDL  60

Query  117  WNADGTSEVNLVKH-SATSPSISTAMSSSYPPPPQNLSPTYPAFTQNPYGQPVGYPQMNN  175
            W+ADGT EVNLV   SA S SIS+A S SYPPP Q  SPT P   Q+    P        
Sbjct  61   WSADGTREVNLVHSSSAPSSSISSASSGSYPPPSQ--SPTSPPTPQSSTAPP--------  110

Query  176  YYGGNAQLAYQYGTNPQASYYPPYYAGGQMPPAGMSPAQQPVPAGPGGMFTRNLIGSLSA  235
                                 PP  A         +         P GM+TRNLIGSL A
Sbjct  111  -------------------SAPPSQARPIATGRVQTNP-------PSGMYTRNLIGSLVA  144

Query  236  SAFRLTDPDNKIGVWFILQDLSVRTEGTFRLKMSFVNVGTQSGDSTNNTPVINHGSAPVL  295
            SAFRL DP+ K G++F+  DLSVRTEGTFRL+ S +N+G    +          GSAPVL
Sbjct  145  SAFRLPDPEGKPGIFFVFPDLSVRTEGTFRLRFSLMNLGATVNEGG--------GSAPVL  196

Query  296  ASVFSEPFQVFSAKKFPGVIESTQLSKCFALQGIKIPIRKDG  337
            A VFS+PF V+SAKKFPG+ EST LSK FA QGIKIPIRKDG
Sbjct  197  AEVFSDPFTVYSAKKFPGMPESTPLSKHFAEQGIKIPIRKDG  238



Lambda      K        H        a         alpha
   0.315    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00000229

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463342 pfam11754, Velvet, Velvet factor. The velvet factor is...  216     7e-72


>CDD:463342 pfam11754, Velvet, Velvet factor.  The velvet factor is conserved 
in many fungal species and is found to have gained different 
roles depending on the organism's need, expanding the 
conserved role in developmental programmes. The velvet factor 
orthologues can be adapted to the fungal-specific life cycle 
and may be involved in diverse functions such as sclerotia 
formation and toxin production, as in A. parasiticus, nutrition-dependent 
sporulation, as in A. fumigatus, or the microconidia-to-macroconidia 
ratio and cell wall formation, as in 
the heterothallic fungus Fusarium verticilloides.
Length=238

 Score = 216 bits (553),  Expect = 7e-72, Method: Composition-based stats.
 Identities = 84/157 (54%), Positives = 100/157 (64%), Gaps = 14/157 (9%)

Query  47   YGTNPQASYYPPYYAGGQMPPAGMSPAQQPVPAG------PGGMFTRNLIGSLSASAFRL  100
            Y    Q+   PP       PP+      +P+  G      P GM+TRNLIGSL ASAFRL
Sbjct  90   YPPPSQSPTSPPTPQSSTAPPSAPPSQARPIATGRVQTNPPSGMYTRNLIGSLVASAFRL  149

Query  101  TDPDNKIGVWFILQDLSVRTEGTFRLKMSFVNVGTQSGDSTNNTPVINHGSAPVLASVFS  160
             DP+ K G++F+  DLSVRTEGTFRL+ S +N+G    +          GSAPVLA VFS
Sbjct  150  PDPEGKPGIFFVFPDLSVRTEGTFRLRFSLMNLGATVNEGG--------GSAPVLAEVFS  201

Query  161  EPFQVFSAKKFPGVIESTQLSKCFALQGIKIPIRKDG  197
            +PF V+SAKKFPG+ EST LSK FA QGIKIPIRKDG
Sbjct  202  DPFTVYSAKKFPGMPESTPLSKHFAEQGIKIPIRKDG  238



Lambda      K        H        a         alpha
   0.314    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00006476

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463342 pfam11754, Velvet, Velvet factor. The velvet factor is...  250     2e-84


>CDD:463342 pfam11754, Velvet, Velvet factor.  The velvet factor is conserved 
in many fungal species and is found to have gained different 
roles depending on the organism's need, expanding the 
conserved role in developmental programmes. The velvet factor 
orthologues can be adapted to the fungal-specific life cycle 
and may be involved in diverse functions such as sclerotia 
formation and toxin production, as in A. parasiticus, nutrition-dependent 
sporulation, as in A. fumigatus, or the microconidia-to-macroconidia 
ratio and cell wall formation, as in 
the heterothallic fungus Fusarium verticilloides.
Length=238

 Score = 250 bits (640),  Expect = 2e-84, Method: Composition-based stats.
 Identities = 108/210 (51%), Positives = 124/210 (59%), Gaps = 37/210 (18%)

Query  57   WSLQVVQQPIRARMCGFGDKDRRPITPPPCIRLIVRDAQTEKEIDINEIDTSFYVLTVDL  116
            + L+VVQQPIRARMCGFGDKDRRPI PPP ++L V D  T  E+DI+EID SF+VL VDL
Sbjct  1    YRLEVVQQPIRARMCGFGDKDRRPIDPPPIVQLRVFDFNTGSEVDIDEIDNSFFVLQVDL  60

Query  117  WNADGTSEVNLVKH-SATSPSISTAMSSSYPPPPQNLSPTYPAFTQNPYGQPVGYPQMNN  175
            W+ADGT EVNLV   SA S SIS+A S SYPPP Q  SPT P   Q+    P        
Sbjct  61   WSADGTREVNLVHSSSAPSSSISSASSGSYPPPSQ--SPTSPPTPQSSTAPP--------  110

Query  176  YYGGNAQLAYQYGTNPQASYYPPYYAGGQMPPAGMSPAQQPVPAGPGGMFTRNLIGSLSA  235
                                 PP  A         +         P GM+TRNLIGSL A
Sbjct  111  -------------------SAPPSQARPIATGRVQTNP-------PSGMYTRNLIGSLVA  144

Query  236  SAFRLTDPDNKIGVWFILQDLSVRTEGTFR  265
            SAFRL DP+ K G++F+  DLSVRTEGTFR
Sbjct  145  SAFRLPDPEGKPGIFFVFPDLSVRTEGTFR  174



Lambda      K        H        a         alpha
   0.315    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00000227

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463342 pfam11754, Velvet, Velvet factor. The velvet factor is...  102     9e-29


>CDD:463342 pfam11754, Velvet, Velvet factor.  The velvet factor is conserved 
in many fungal species and is found to have gained different 
roles depending on the organism's need, expanding the 
conserved role in developmental programmes. The velvet factor 
orthologues can be adapted to the fungal-specific life cycle 
and may be involved in diverse functions such as sclerotia 
formation and toxin production, as in A. parasiticus, nutrition-dependent 
sporulation, as in A. fumigatus, or the microconidia-to-macroconidia 
ratio and cell wall formation, as in 
the heterothallic fungus Fusarium verticilloides.
Length=238

 Score = 102 bits (257),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 50/85 (59%), Gaps = 6/85 (7%)

Query  47   YGTNPQASYYPPYYAGGQMPPAGMSPAQQPVPAG------PGGMFTRNLIGSLSASAFRL  100
            Y    Q+   PP       PP+      +P+  G      P GM+TRNLIGSL ASAFRL
Sbjct  90   YPPPSQSPTSPPTPQSSTAPPSAPPSQARPIATGRVQTNPPSGMYTRNLIGSLVASAFRL  149

Query  101  TDPDNKIGVWFILQDLSVRTEGTFR  125
             DP+ K G++F+  DLSVRTEGTFR
Sbjct  150  PDPEGKPGIFFVFPDLSVRTEGTFR  174



Lambda      K        H        a         alpha
   0.314    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00000230

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463342 pfam11754, Velvet, Velvet factor. The velvet factor is...  216     7e-72


>CDD:463342 pfam11754, Velvet, Velvet factor.  The velvet factor is conserved 
in many fungal species and is found to have gained different 
roles depending on the organism's need, expanding the 
conserved role in developmental programmes. The velvet factor 
orthologues can be adapted to the fungal-specific life cycle 
and may be involved in diverse functions such as sclerotia 
formation and toxin production, as in A. parasiticus, nutrition-dependent 
sporulation, as in A. fumigatus, or the microconidia-to-macroconidia 
ratio and cell wall formation, as in 
the heterothallic fungus Fusarium verticilloides.
Length=238

 Score = 216 bits (553),  Expect = 7e-72, Method: Composition-based stats.
 Identities = 84/157 (54%), Positives = 100/157 (64%), Gaps = 14/157 (9%)

Query  47   YGTNPQASYYPPYYAGGQMPPAGMSPAQQPVPAG------PGGMFTRNLIGSLSASAFRL  100
            Y    Q+   PP       PP+      +P+  G      P GM+TRNLIGSL ASAFRL
Sbjct  90   YPPPSQSPTSPPTPQSSTAPPSAPPSQARPIATGRVQTNPPSGMYTRNLIGSLVASAFRL  149

Query  101  TDPDNKIGVWFILQDLSVRTEGTFRLKMSFVNVGTQSGDSTNNTPVINHGSAPVLASVFS  160
             DP+ K G++F+  DLSVRTEGTFRL+ S +N+G    +          GSAPVLA VFS
Sbjct  150  PDPEGKPGIFFVFPDLSVRTEGTFRLRFSLMNLGATVNEGG--------GSAPVLAEVFS  201

Query  161  EPFQVFSAKKFPGVIESTQLSKCFALQGIKIPIRKDG  197
            +PF V+SAKKFPG+ EST LSK FA QGIKIPIRKDG
Sbjct  202  DPFTVYSAKKFPGMPESTPLSKHFAEQGIKIPIRKDG  238



Lambda      K        H        a         alpha
   0.314    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00000231

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463342 pfam11754, Velvet, Velvet factor. The velvet factor is...  216     7e-72


>CDD:463342 pfam11754, Velvet, Velvet factor.  The velvet factor is conserved 
in many fungal species and is found to have gained different 
roles depending on the organism's need, expanding the 
conserved role in developmental programmes. The velvet factor 
orthologues can be adapted to the fungal-specific life cycle 
and may be involved in diverse functions such as sclerotia 
formation and toxin production, as in A. parasiticus, nutrition-dependent 
sporulation, as in A. fumigatus, or the microconidia-to-macroconidia 
ratio and cell wall formation, as in 
the heterothallic fungus Fusarium verticilloides.
Length=238

 Score = 216 bits (553),  Expect = 7e-72, Method: Composition-based stats.
 Identities = 84/157 (54%), Positives = 100/157 (64%), Gaps = 14/157 (9%)

Query  47   YGTNPQASYYPPYYAGGQMPPAGMSPAQQPVPAG------PGGMFTRNLIGSLSASAFRL  100
            Y    Q+   PP       PP+      +P+  G      P GM+TRNLIGSL ASAFRL
Sbjct  90   YPPPSQSPTSPPTPQSSTAPPSAPPSQARPIATGRVQTNPPSGMYTRNLIGSLVASAFRL  149

Query  101  TDPDNKIGVWFILQDLSVRTEGTFRLKMSFVNVGTQSGDSTNNTPVINHGSAPVLASVFS  160
             DP+ K G++F+  DLSVRTEGTFRL+ S +N+G    +          GSAPVLA VFS
Sbjct  150  PDPEGKPGIFFVFPDLSVRTEGTFRLRFSLMNLGATVNEGG--------GSAPVLAEVFS  201

Query  161  EPFQVFSAKKFPGVIESTQLSKCFALQGIKIPIRKDG  197
            +PF V+SAKKFPG+ EST LSK FA QGIKIPIRKDG
Sbjct  202  DPFTVYSAKKFPGMPESTPLSKHFAEQGIKIPIRKDG  238



Lambda      K        H        a         alpha
   0.314    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00000233

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459801 pfam00400, WD40, WD domain, G-beta repeat                  55.0    4e-11


>CDD:459801 pfam00400, WD40, WD domain, G-beta repeat.  
Length=39

 Score = 55.0 bits (133),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 0/39 (0%)

Query  18  GTPKHTLKGHTSWVLAVSYSPNGAMIATGSMDNTVRLWD  56
           G    TL+GHT  V ++++SP+G ++A+GS D TV++WD
Sbjct  1   GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD  39



Lambda      K        H        a         alpha
   0.316    0.130    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00000232

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00006477

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00006478

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459801 pfam00400, WD40, WD domain, G-beta repeat                  55.0    4e-11


>CDD:459801 pfam00400, WD40, WD domain, G-beta repeat.  
Length=39

 Score = 55.0 bits (133),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 0/39 (0%)

Query  18  GTPKHTLKGHTSWVLAVSYSPNGAMIATGSMDNTVRLWD  56
           G    TL+GHT  V ++++SP+G ++A+GS D TV++WD
Sbjct  1   GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD  39



Lambda      K        H        a         alpha
   0.316    0.130    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00006479

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425714 pfam00488, MutS_V, MutS domain V. This domain is found...  205     4e-64
CDD:461579 pfam05192, MutS_III, MutS domain III. This domain is f...  84.4    1e-18
CDD:398730 pfam05190, MutS_IV, MutS family domain IV. This domain...  58.8    2e-11


>CDD:425714 pfam00488, MutS_V, MutS domain V.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam01624, pfam05188, pfam05192 and 
pfam05190. The mutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
V of Thermus aquaticus MutS, which contains a Walker A motif, 
and is structurally similar to the ATPase domain of ABC transporters.
Length=188

 Score = 205 bits (524),  Expect = 4e-64, Method: Composition-based stats.
 Identities = 90/190 (47%), Positives = 119/190 (63%), Gaps = 4/190 (2%)

Query  250  QIITGSNMSGKSTYIRSLALMTIMAQIGCFVPAEYASFPVMHQLFARVSTSDDLEANVST  309
             IITG NM GKSTY+R +AL+ +MAQIG FVPAE A   ++ ++F R+  SDDL    ST
Sbjct  1    LIITGPNMGGKSTYLRQVALIVLMAQIGSFVPAESAEIGIVDRIFTRIGASDDLAKGRST  60

Query  310  FAAEMREMAFILRNIEPRSIVIVDELGRGTSTTDGLAIAIAIAEA-LIESHALVWFVTHF  368
            F  EM E A IL N   +S+VI+DELGRGTST DGLAIA A+AE    +  A   F TH+
Sbjct  61   FMVEMLETANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIKARTLFATHY  120

Query  369  RDLALILAERNGVVSLHLAAEISPDISQMVMLYKIAEGPDTTQFYGLAVAKLVDLPPGVL  428
             +L  +  +   V +LH+AA    D   +V LYK+  G    + YG+ VA+L  LP  V+
Sbjct  121  HELTKLAEKLPAVKNLHMAAVEDDD--DIVFLYKVQPGA-ADKSYGIHVAELAGLPESVV  177

Query  429  ERAQTVSEKL  438
            ERA+ +  +L
Sbjct  178  ERAREILAEL  187


>CDD:461579 pfam05192, MutS_III, MutS domain III.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam00488, pfam05188, pfam01624 
and pfam05190. The MutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles in 
DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
III, which is central to the structure of Thermus aquaticus 
MutS as characterized in.
Length=291

 Score = 84.4 bits (209),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 42/193 (22%), Positives = 79/193 (41%), Gaps = 2/193 (1%)

Query  11   SIYKALATAQSSLLMTIRELCGPAGH-RAIEQLIEETL-NEHVTYQTKPLDLRNQRIYCV  68
            ++  +L        + + E     G   ++ +L+EE +  E          +R+     +
Sbjct  99   ALLDSLEKLPLLKELLLEEKSALLGELASLAELLEEAIDEEPPALLRDGGVIRDGYDEEL  158

Query  69   RAGVNSLLDVARQTYKEANVDAADLVAKVSESHNLTLDLKLDSARQYYISVSASEVKTLS  128
                + LLD  R   K    +      K  +     +        +YYI VS S+   + 
Sbjct  159  DELRDLLLDGKRLLAKLEARERERTGIKSLKVLYNKVFGYYLLLVEYYIEVSKSQKDKVP  218

Query  129  GIFINIYRRKNRIECQTLDLVKLNQKIMDAHNEVINMSDQTIQSLINDVCSEISVLFKVS  188
              +I I   KN     T +L +L +KI+ A   ++ +  +  + L+ +V   I VL + +
Sbjct  219  DDYIRIQTTKNAERYITPELKELERKILQAEERLLALEKELFEELLEEVLEYIEVLRRAA  278

Query  189  EAIAMLDMLAAFA  201
            EA+A LD+L + A
Sbjct  279  EALAELDVLLSLA  291


>CDD:398730 pfam05190, MutS_IV, MutS family domain IV.  This domain is found 
in proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam01624, pfam05188, pfam05192 
and pfam00488. The mutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles 
in DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a 
mismatch binding protein. The aligned region corresponds in 
part with globular domain IV, which is involved in DNA binding, 
in Thermus aquaticus MutS as characterized in.
Length=92

 Score = 58.8 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 41/92 (45%), Gaps = 1/92 (1%)

Query  71   GVNSLLDVARQTYKEANVDAADLVAKVSESHNL-TLDLKLDSARQYYISVSASEVKTLSG  129
            G +  LD  R    E   +  +L  K  E   + +L +  +    YYI V+ SE K +  
Sbjct  1    GFDEELDELRDLLDELEKELEELEKKEREKLGIKSLKVGYNKVFGYYIEVTRSEAKKVPS  60

Query  130  IFINIYRRKNRIECQTLDLVKLNQKIMDAHNE  161
             +I     KN +   T +L KL  ++++A  E
Sbjct  61   NYIRRQTLKNGVRFTTPELKKLEDELLEAEEE  92



Lambda      K        H        a         alpha
   0.319    0.131    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00000234

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425714 pfam00488, MutS_V, MutS domain V. This domain is found...  205     3e-63
CDD:461579 pfam05192, MutS_III, MutS domain III. This domain is f...  159     7e-45
CDD:398730 pfam05190, MutS_IV, MutS family domain IV. This domain...  58.4    2e-11


>CDD:425714 pfam00488, MutS_V, MutS domain V.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam01624, pfam05188, pfam05192 and 
pfam05190. The mutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
V of Thermus aquaticus MutS, which contains a Walker A motif, 
and is structurally similar to the ATPase domain of ABC transporters.
Length=188

 Score = 205 bits (524),  Expect = 3e-63, Method: Composition-based stats.
 Identities = 90/190 (47%), Positives = 119/190 (63%), Gaps = 4/190 (2%)

Query  363  QIITGSNMSGKSTYIRSLALMTIMAQIGCFVPAEYASFPVMHQLFARVSTSDDLEANVST  422
             IITG NM GKSTY+R +AL+ +MAQIG FVPAE A   ++ ++F R+  SDDL    ST
Sbjct  1    LIITGPNMGGKSTYLRQVALIVLMAQIGSFVPAESAEIGIVDRIFTRIGASDDLAKGRST  60

Query  423  FAAEMREMAFILRNIEPRSIVIVDELGRGTSTTDGLAIAIAIAE-ALIESHALVWFVTHF  481
            F  EM E A IL N   +S+VI+DELGRGTST DGLAIA A+AE    +  A   F TH+
Sbjct  61   FMVEMLETANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIKARTLFATHY  120

Query  482  RDLALILAERNGVVSLHLAAEISPDISQMVMLYKIAEGPDTTQFYGLAVAKLVDLPPGVL  541
             +L  +  +   V +LH+AA    D   +V LYK+  G    + YG+ VA+L  LP  V+
Sbjct  121  HELTKLAEKLPAVKNLHMAAVEDDD--DIVFLYKVQPGA-ADKSYGIHVAELAGLPESVV  177

Query  542  ERAQTVSEKL  551
            ERA+ +  +L
Sbjct  178  ERAREILAEL  187


>CDD:461579 pfam05192, MutS_III, MutS domain III.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam00488, pfam05188, pfam01624 
and pfam05190. The MutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles in 
DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
III, which is central to the structure of Thermus aquaticus 
MutS as characterized in.
Length=291

 Score = 159 bits (405),  Expect = 7e-45, Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 145/310 (47%), Gaps = 20/310 (6%)

Query  6    STIVSLELIQNLQNAKSEDSLLGLLNETLTPMGARLLRANILQPCTEKSKLLARYDAVED  65
            +T+ +LEL +NL+  K E SLLGLL+ T TPMG+RLLR  +LQP T+  ++  R DAVE+
Sbjct  1    ATLRNLELTENLRGGK-EGSLLGLLDRTKTPMGSRLLRQWLLQPLTDLEEINERLDAVEE  59

Query  66   LSTKEDMFISVRQALKGFIDADKVLTSLILAPTKRTFQYVEQSGNNVIMLKTYVSSINSI  125
            L    ++   +R+ L+   D +++L+              + +  +++ L   +  +  +
Sbjct  60   LLENSELREDLRELLRRLPDLERLLSR---------IALGKATPRDLLALLDSLEKLPLL  110

Query  126  YKALATAQSSLLMTIRELCGPAGHRAIEQLIEETL-NEHVTYQTKPLDLRNQRIYCVRAG  184
             + L   +S+LL  +  L          +L+EE +  E          +R+     +   
Sbjct  111  KELLLEEKSALLGELASLA---------ELLEEAIDEEPPALLRDGGVIRDGYDEELDEL  161

Query  185  VNSLLDVARQTYKEANVDAADLVAKVSESHNLTLDLKLDSARQYYISVSASEVKTLSGIF  244
             + LLD  R   K    +      K  +     +        +YYI VS S+   +   +
Sbjct  162  RDLLLDGKRLLAKLEARERERTGIKSLKVLYNKVFGYYLLLVEYYIEVSKSQKDKVPDDY  221

Query  245  INIYRRKNRIECQTLDLVKLNQKIMDAHNEVINMSDQTIQSLINDVCSEISVLFKVSEAI  304
            I I   KN     T +L +L +KI+ A   ++ +  +  + L+ +V   I VL + +EA+
Sbjct  222  IRIQTTKNAERYITPELKELERKILQAEERLLALEKELFEELLEEVLEYIEVLRRAAEAL  281

Query  305  AMLDMLAAFA  314
            A LD+L + A
Sbjct  282  AELDVLLSLA  291


>CDD:398730 pfam05190, MutS_IV, MutS family domain IV.  This domain is found 
in proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam01624, pfam05188, pfam05192 
and pfam00488. The mutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles 
in DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a 
mismatch binding protein. The aligned region corresponds in 
part with globular domain IV, which is involved in DNA binding, 
in Thermus aquaticus MutS as characterized in.
Length=92

 Score = 58.4 bits (142),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 41/92 (45%), Gaps = 1/92 (1%)

Query  184  GVNSLLDVARQTYKEANVDAADLVAKVSESHNL-TLDLKLDSARQYYISVSASEVKTLSG  242
            G +  LD  R    E   +  +L  K  E   + +L +  +    YYI V+ SE K +  
Sbjct  1    GFDEELDELRDLLDELEKELEELEKKEREKLGIKSLKVGYNKVFGYYIEVTRSEAKKVPS  60

Query  243  IFINIYRRKNRIECQTLDLVKLNQKIMDAHNE  274
             +I     KN +   T +L KL  ++++A  E
Sbjct  61   NYIRRQTLKNGVRFTTPELKKLEDELLEAEEE  92



Lambda      K        H        a         alpha
   0.318    0.131    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 814084080


Query= TCONS_00006480

Length=377
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425714 pfam00488, MutS_V, MutS domain V. This domain is found...  204     2e-65


>CDD:425714 pfam00488, MutS_V, MutS domain V.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam01624, pfam05188, pfam05192 and 
pfam05190. The mutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
V of Thermus aquaticus MutS, which contains a Walker A motif, 
and is structurally similar to the ATPase domain of ABC transporters.
Length=188

 Score = 204 bits (522),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 90/190 (47%), Positives = 119/190 (63%), Gaps = 4/190 (2%)

Query  95   QIITGSNMSGKSTYIRSLALMTIMAQIGCFVPAEYASFPVMHQLFARVSTSDDLEANVST  154
             IITG NM GKSTY+R +AL+ +MAQIG FVPAE A   ++ ++F R+  SDDL    ST
Sbjct  1    LIITGPNMGGKSTYLRQVALIVLMAQIGSFVPAESAEIGIVDRIFTRIGASDDLAKGRST  60

Query  155  FAAEMREMAFILRNIEPRSIVIVDELGRGTSTTDGLAIAIAIAEA-LIESHALVWFVTHF  213
            F  EM E A IL N   +S+VI+DELGRGTST DGLAIA A+AE    +  A   F TH+
Sbjct  61   FMVEMLETANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIKARTLFATHY  120

Query  214  RDLALILAERNGVVSLHLAAEISPDISQMVMLYKIAEGPDTTQFYGLAVAKLVDLPPGVL  273
             +L  +  +   V +LH+AA    D   +V LYK+  G    + YG+ VA+L  LP  V+
Sbjct  121  HELTKLAEKLPAVKNLHMAAVEDDD--DIVFLYKVQPGA-ADKSYGIHVAELAGLPESVV  177

Query  274  ERAQTVSEKL  283
            ERA+ +  +L
Sbjct  178  ERAREILAEL  187



Lambda      K        H        a         alpha
   0.319    0.131    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 447362496


Query= TCONS_00000236

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425714 pfam00488, MutS_V, MutS domain V. This domain is found...  205     4e-64
CDD:461579 pfam05192, MutS_III, MutS domain III. This domain is f...  84.4    1e-18
CDD:398730 pfam05190, MutS_IV, MutS family domain IV. This domain...  58.8    2e-11


>CDD:425714 pfam00488, MutS_V, MutS domain V.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam01624, pfam05188, pfam05192 and 
pfam05190. The mutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
V of Thermus aquaticus MutS, which contains a Walker A motif, 
and is structurally similar to the ATPase domain of ABC transporters.
Length=188

 Score = 205 bits (524),  Expect = 4e-64, Method: Composition-based stats.
 Identities = 90/190 (47%), Positives = 119/190 (63%), Gaps = 4/190 (2%)

Query  250  QIITGSNMSGKSTYIRSLALMTIMAQIGCFVPAEYASFPVMHQLFARVSTSDDLEANVST  309
             IITG NM GKSTY+R +AL+ +MAQIG FVPAE A   ++ ++F R+  SDDL    ST
Sbjct  1    LIITGPNMGGKSTYLRQVALIVLMAQIGSFVPAESAEIGIVDRIFTRIGASDDLAKGRST  60

Query  310  FAAEMREMAFILRNIEPRSIVIVDELGRGTSTTDGLAIAIAIAEA-LIESHALVWFVTHF  368
            F  EM E A IL N   +S+VI+DELGRGTST DGLAIA A+AE    +  A   F TH+
Sbjct  61   FMVEMLETANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIKARTLFATHY  120

Query  369  RDLALILAERNGVVSLHLAAEISPDISQMVMLYKIAEGPDTTQFYGLAVAKLVDLPPGVL  428
             +L  +  +   V +LH+AA    D   +V LYK+  G    + YG+ VA+L  LP  V+
Sbjct  121  HELTKLAEKLPAVKNLHMAAVEDDD--DIVFLYKVQPGA-ADKSYGIHVAELAGLPESVV  177

Query  429  ERAQTVSEKL  438
            ERA+ +  +L
Sbjct  178  ERAREILAEL  187


>CDD:461579 pfam05192, MutS_III, MutS domain III.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam00488, pfam05188, pfam01624 
and pfam05190. The MutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles in 
DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
III, which is central to the structure of Thermus aquaticus 
MutS as characterized in.
Length=291

 Score = 84.4 bits (209),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 42/193 (22%), Positives = 79/193 (41%), Gaps = 2/193 (1%)

Query  11   SIYKALATAQSSLLMTIRELCGPAGH-RAIEQLIEETL-NEHVTYQTKPLDLRNQRIYCV  68
            ++  +L        + + E     G   ++ +L+EE +  E          +R+     +
Sbjct  99   ALLDSLEKLPLLKELLLEEKSALLGELASLAELLEEAIDEEPPALLRDGGVIRDGYDEEL  158

Query  69   RAGVNSLLDVARQTYKEANVDAADLVAKVSESHNLTLDLKLDSARQYYISVSASEVKTLS  128
                + LLD  R   K    +      K  +     +        +YYI VS S+   + 
Sbjct  159  DELRDLLLDGKRLLAKLEARERERTGIKSLKVLYNKVFGYYLLLVEYYIEVSKSQKDKVP  218

Query  129  GIFINIYRRKNRIECQTLDLVKLNQKIMDAHNEVINMSDQTIQSLINDVCSEISVLFKVS  188
              +I I   KN     T +L +L +KI+ A   ++ +  +  + L+ +V   I VL + +
Sbjct  219  DDYIRIQTTKNAERYITPELKELERKILQAEERLLALEKELFEELLEEVLEYIEVLRRAA  278

Query  189  EAIAMLDMLAAFA  201
            EA+A LD+L + A
Sbjct  279  EALAELDVLLSLA  291


>CDD:398730 pfam05190, MutS_IV, MutS family domain IV.  This domain is found 
in proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam01624, pfam05188, pfam05192 
and pfam00488. The mutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles 
in DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a 
mismatch binding protein. The aligned region corresponds in 
part with globular domain IV, which is involved in DNA binding, 
in Thermus aquaticus MutS as characterized in.
Length=92

 Score = 58.8 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 41/92 (45%), Gaps = 1/92 (1%)

Query  71   GVNSLLDVARQTYKEANVDAADLVAKVSESHNL-TLDLKLDSARQYYISVSASEVKTLSG  129
            G +  LD  R    E   +  +L  K  E   + +L +  +    YYI V+ SE K +  
Sbjct  1    GFDEELDELRDLLDELEKELEELEKKEREKLGIKSLKVGYNKVFGYYIEVTRSEAKKVPS  60

Query  130  IFINIYRRKNRIECQTLDLVKLNQKIMDAHNE  161
             +I     KN +   T +L KL  ++++A  E
Sbjct  61   NYIRRQTLKNGVRFTTPELKKLEDELLEAEEE  92



Lambda      K        H        a         alpha
   0.319    0.131    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00000235

Length=839
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425714 pfam00488, MutS_V, MutS domain V. This domain is found...  205     4e-62
CDD:461579 pfam05192, MutS_III, MutS domain III. This domain is f...  162     4e-45
CDD:398730 pfam05190, MutS_IV, MutS family domain IV. This domain...  59.2    2e-11


>CDD:425714 pfam00488, MutS_V, MutS domain V.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam01624, pfam05188, pfam05192 and 
pfam05190. The mutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
V of Thermus aquaticus MutS, which contains a Walker A motif, 
and is structurally similar to the ATPase domain of ABC transporters.
Length=188

 Score = 205 bits (525),  Expect = 4e-62, Method: Composition-based stats.
 Identities = 90/190 (47%), Positives = 119/190 (63%), Gaps = 4/190 (2%)

Query  557  QIITGSNMSGKSTYIRSLALMTIMAQIGCFVPAEYASFPVMHQLFARVSTSDDLEANVST  616
             IITG NM GKSTY+R +AL+ +MAQIG FVPAE A   ++ ++F R+  SDDL    ST
Sbjct  1    LIITGPNMGGKSTYLRQVALIVLMAQIGSFVPAESAEIGIVDRIFTRIGASDDLAKGRST  60

Query  617  FAAEMREMAFILRNIEPRSIVIVDELGRGTSTTDGLAIAIAIAE-ALIESHALVWFVTHF  675
            F  EM E A IL N   +S+VI+DELGRGTST DGLAIA A+AE    +  A   F TH+
Sbjct  61   FMVEMLETANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIKARTLFATHY  120

Query  676  RDLALILAERNGVVSLHLAAEISPDISQMVMLYKIAEGPDTTQFYGLAVAKLVDLPPGVL  735
             +L  +  +   V +LH+AA    D   +V LYK+  G    + YG+ VA+L  LP  V+
Sbjct  121  HELTKLAEKLPAVKNLHMAAVEDDD--DIVFLYKVQPGA-ADKSYGIHVAELAGLPESVV  177

Query  736  ERAQTVSEKL  745
            ERA+ +  +L
Sbjct  178  ERAREILAEL  187


>CDD:461579 pfam05192, MutS_III, MutS domain III.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam00488, pfam05188, pfam01624 
and pfam05190. The MutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles in 
DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
III, which is central to the structure of Thermus aquaticus 
MutS as characterized in.
Length=291

 Score = 162 bits (411),  Expect = 4e-45, Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 145/310 (47%), Gaps = 20/310 (6%)

Query  200  STIVSLELIQNLQNAKSEDSLLGLLNETLTPMGARLLRANILQPCTEKSKLLARYDAVED  259
            +T+ +LEL +NL+  K E SLLGLL+ T TPMG+RLLR  +LQP T+  ++  R DAVE+
Sbjct  1    ATLRNLELTENLRGGK-EGSLLGLLDRTKTPMGSRLLRQWLLQPLTDLEEINERLDAVEE  59

Query  260  LSTKEDMFISVRQALKGFIDADKVLTSLILAPTKRTFQYVEQSGNNVIMLKTYVSSINSI  319
            L    ++   +R+ L+   D +++L+              + +  +++ L   +  +  +
Sbjct  60   LLENSELREDLRELLRRLPDLERLLSR---------IALGKATPRDLLALLDSLEKLPLL  110

Query  320  YKALATAQSSLLMTIRELCGPAGHRAIEQLIEETL-NEHVTYQTKPLDLRNQRIYCVRAG  378
             + L   +S+LL  +  L          +L+EE +  E          +R+     +   
Sbjct  111  KELLLEEKSALLGELASLA---------ELLEEAIDEEPPALLRDGGVIRDGYDEELDEL  161

Query  379  VNSLLDVARQTYKEANVDAADLVAKVSESHNLTLDLKLDSARQYYISVSASEVKTLSGIF  438
             + LLD  R   K    +      K  +     +        +YYI VS S+   +   +
Sbjct  162  RDLLLDGKRLLAKLEARERERTGIKSLKVLYNKVFGYYLLLVEYYIEVSKSQKDKVPDDY  221

Query  439  INIYRRKNRIECQTLDLVKLNQKIMDAHNEVINMSDQTIQSLINDVCSEISVLFKVSEAI  498
            I I   KN     T +L +L +KI+ A   ++ +  +  + L+ +V   I VL + +EA+
Sbjct  222  IRIQTTKNAERYITPELKELERKILQAEERLLALEKELFEELLEEVLEYIEVLRRAAEAL  281

Query  499  AMLDMLAAFA  508
            A LD+L + A
Sbjct  282  AELDVLLSLA  291


>CDD:398730 pfam05190, MutS_IV, MutS family domain IV.  This domain is found 
in proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam01624, pfam05188, pfam05192 
and pfam00488. The mutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles 
in DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a 
mismatch binding protein. The aligned region corresponds in 
part with globular domain IV, which is involved in DNA binding, 
in Thermus aquaticus MutS as characterized in.
Length=92

 Score = 59.2 bits (144),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 41/92 (45%), Gaps = 1/92 (1%)

Query  378  GVNSLLDVARQTYKEANVDAADLVAKVSESHNL-TLDLKLDSARQYYISVSASEVKTLSG  436
            G +  LD  R    E   +  +L  K  E   + +L +  +    YYI V+ SE K +  
Sbjct  1    GFDEELDELRDLLDELEKELEELEKKEREKLGIKSLKVGYNKVFGYYIEVTRSEAKKVPS  60

Query  437  IFINIYRRKNRIECQTLDLVKLNQKIMDAHNE  468
             +I     KN +   T +L KL  ++++A  E
Sbjct  61   NYIRRQTLKNGVRFTTPELKKLEDELLEAEEE  92



Lambda      K        H        a         alpha
   0.319    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1068022416


Query= TCONS_00006481

Length=377
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425714 pfam00488, MutS_V, MutS domain V. This domain is found...  204     2e-65


>CDD:425714 pfam00488, MutS_V, MutS domain V.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam01624, pfam05188, pfam05192 and 
pfam05190. The mutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
V of Thermus aquaticus MutS, which contains a Walker A motif, 
and is structurally similar to the ATPase domain of ABC transporters.
Length=188

 Score = 204 bits (522),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 90/190 (47%), Positives = 119/190 (63%), Gaps = 4/190 (2%)

Query  95   QIITGSNMSGKSTYIRSLALMTIMAQIGCFVPAEYASFPVMHQLFARVSTSDDLEANVST  154
             IITG NM GKSTY+R +AL+ +MAQIG FVPAE A   ++ ++F R+  SDDL    ST
Sbjct  1    LIITGPNMGGKSTYLRQVALIVLMAQIGSFVPAESAEIGIVDRIFTRIGASDDLAKGRST  60

Query  155  FAAEMREMAFILRNIEPRSIVIVDELGRGTSTTDGLAIAIAIAEA-LIESHALVWFVTHF  213
            F  EM E A IL N   +S+VI+DELGRGTST DGLAIA A+AE    +  A   F TH+
Sbjct  61   FMVEMLETANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIKARTLFATHY  120

Query  214  RDLALILAERNGVVSLHLAAEISPDISQMVMLYKIAEGPDTTQFYGLAVAKLVDLPPGVL  273
             +L  +  +   V +LH+AA    D   +V LYK+  G    + YG+ VA+L  LP  V+
Sbjct  121  HELTKLAEKLPAVKNLHMAAVEDDD--DIVFLYKVQPGA-ADKSYGIHVAELAGLPESVV  177

Query  274  ERAQTVSEKL  283
            ERA+ +  +L
Sbjct  178  ERAREILAEL  187



Lambda      K        H        a         alpha
   0.319    0.131    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0790    0.140     1.90     42.6     43.6 

Effective search space used: 447362496


Query= TCONS_00006482

Length=377
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425714 pfam00488, MutS_V, MutS domain V. This domain is found...  204     2e-65


>CDD:425714 pfam00488, MutS_V, MutS domain V.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam01624, pfam05188, pfam05192 and 
pfam05190. The mutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
V of Thermus aquaticus MutS, which contains a Walker A motif, 
and is structurally similar to the ATPase domain of ABC transporters.
Length=188

 Score = 204 bits (522),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 90/190 (47%), Positives = 119/190 (63%), Gaps = 4/190 (2%)

Query  95   QIITGSNMSGKSTYIRSLALMTIMAQIGCFVPAEYASFPVMHQLFARVSTSDDLEANVST  154
             IITG NM GKSTY+R +AL+ +MAQIG FVPAE A   ++ ++F R+  SDDL    ST
Sbjct  1    LIITGPNMGGKSTYLRQVALIVLMAQIGSFVPAESAEIGIVDRIFTRIGASDDLAKGRST  60

Query  155  FAAEMREMAFILRNIEPRSIVIVDELGRGTSTTDGLAIAIAIAEA-LIESHALVWFVTHF  213
            F  EM E A IL N   +S+VI+DELGRGTST DGLAIA A+AE    +  A   F TH+
Sbjct  61   FMVEMLETANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIKARTLFATHY  120

Query  214  RDLALILAERNGVVSLHLAAEISPDISQMVMLYKIAEGPDTTQFYGLAVAKLVDLPPGVL  273
             +L  +  +   V +LH+AA    D   +V LYK+  G    + YG+ VA+L  LP  V+
Sbjct  121  HELTKLAEKLPAVKNLHMAAVEDDD--DIVFLYKVQPGA-ADKSYGIHVAELAGLPESVV  177

Query  274  ERAQTVSEKL  283
            ERA+ +  +L
Sbjct  178  ERAREILAEL  187



Lambda      K        H        a         alpha
   0.319    0.131    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 447362496


Query= TCONS_00000237

Length=840
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425714 pfam00488, MutS_V, MutS domain V. This domain is found...  205     4e-62
CDD:461579 pfam05192, MutS_III, MutS domain III. This domain is f...  162     4e-45
CDD:398730 pfam05190, MutS_IV, MutS family domain IV. This domain...  59.2    2e-11


>CDD:425714 pfam00488, MutS_V, MutS domain V.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam01624, pfam05188, pfam05192 and 
pfam05190. The mutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
V of Thermus aquaticus MutS, which contains a Walker A motif, 
and is structurally similar to the ATPase domain of ABC transporters.
Length=188

 Score = 205 bits (525),  Expect = 4e-62, Method: Composition-based stats.
 Identities = 90/190 (47%), Positives = 119/190 (63%), Gaps = 4/190 (2%)

Query  558  QIITGSNMSGKSTYIRSLALMTIMAQIGCFVPAEYASFPVMHQLFARVSTSDDLEANVST  617
             IITG NM GKSTY+R +AL+ +MAQIG FVPAE A   ++ ++F R+  SDDL    ST
Sbjct  1    LIITGPNMGGKSTYLRQVALIVLMAQIGSFVPAESAEIGIVDRIFTRIGASDDLAKGRST  60

Query  618  FAAEMREMAFILRNIEPRSIVIVDELGRGTSTTDGLAIAIAIAE-ALIESHALVWFVTHF  676
            F  EM E A IL N   +S+VI+DELGRGTST DGLAIA A+AE    +  A   F TH+
Sbjct  61   FMVEMLETANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIKARTLFATHY  120

Query  677  RDLALILAERNGVVSLHLAAEISPDISQMVMLYKIAEGPDTTQFYGLAVAKLVDLPPGVL  736
             +L  +  +   V +LH+AA    D   +V LYK+  G    + YG+ VA+L  LP  V+
Sbjct  121  HELTKLAEKLPAVKNLHMAAVEDDD--DIVFLYKVQPGA-ADKSYGIHVAELAGLPESVV  177

Query  737  ERAQTVSEKL  746
            ERA+ +  +L
Sbjct  178  ERAREILAEL  187


>CDD:461579 pfam05192, MutS_III, MutS domain III.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam00488, pfam05188, pfam01624 
and pfam05190. The MutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles in 
DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
III, which is central to the structure of Thermus aquaticus 
MutS as characterized in.
Length=291

 Score = 162 bits (411),  Expect = 4e-45, Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 145/310 (47%), Gaps = 20/310 (6%)

Query  201  STIVSLELIQNLQNAKSEDSLLGLLNETLTPMGARLLRANILQPCTEKSKLLARYDAVED  260
            +T+ +LEL +NL+  K E SLLGLL+ T TPMG+RLLR  +LQP T+  ++  R DAVE+
Sbjct  1    ATLRNLELTENLRGGK-EGSLLGLLDRTKTPMGSRLLRQWLLQPLTDLEEINERLDAVEE  59

Query  261  LSTKEDMFISVRQALKGFIDADKVLTSLILAPTKRTFQYVEQSGNNVIMLKTYVSSINSI  320
            L    ++   +R+ L+   D +++L+              + +  +++ L   +  +  +
Sbjct  60   LLENSELREDLRELLRRLPDLERLLSR---------IALGKATPRDLLALLDSLEKLPLL  110

Query  321  YKALATAQSSLLMTIRELCGPAGHRAIEQLIEETL-NEHVTYQTKPLDLRNQRIYCVRAG  379
             + L   +S+LL  +  L          +L+EE +  E          +R+     +   
Sbjct  111  KELLLEEKSALLGELASLA---------ELLEEAIDEEPPALLRDGGVIRDGYDEELDEL  161

Query  380  VNSLLDVARQTYKEANVDAADLVAKVSESHNLTLDLKLDSARQYYISVSASEVKTLSGIF  439
             + LLD  R   K    +      K  +     +        +YYI VS S+   +   +
Sbjct  162  RDLLLDGKRLLAKLEARERERTGIKSLKVLYNKVFGYYLLLVEYYIEVSKSQKDKVPDDY  221

Query  440  INIYRRKNRIECQTLDLVKLNQKIMDAHNEVINMSDQTIQSLINDVCSEISVLFKVSEAI  499
            I I   KN     T +L +L +KI+ A   ++ +  +  + L+ +V   I VL + +EA+
Sbjct  222  IRIQTTKNAERYITPELKELERKILQAEERLLALEKELFEELLEEVLEYIEVLRRAAEAL  281

Query  500  AMLDMLAAFA  509
            A LD+L + A
Sbjct  282  AELDVLLSLA  291


>CDD:398730 pfam05190, MutS_IV, MutS family domain IV.  This domain is found 
in proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam01624, pfam05188, pfam05192 
and pfam00488. The mutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles 
in DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a 
mismatch binding protein. The aligned region corresponds in 
part with globular domain IV, which is involved in DNA binding, 
in Thermus aquaticus MutS as characterized in.
Length=92

 Score = 59.2 bits (144),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 41/92 (45%), Gaps = 1/92 (1%)

Query  379  GVNSLLDVARQTYKEANVDAADLVAKVSESHNL-TLDLKLDSARQYYISVSASEVKTLSG  437
            G +  LD  R    E   +  +L  K  E   + +L +  +    YYI V+ SE K +  
Sbjct  1    GFDEELDELRDLLDELEKELEELEKKEREKLGIKSLKVGYNKVFGYYIEVTRSEAKKVPS  60

Query  438  IFINIYRRKNRIECQTLDLVKLNQKIMDAHNE  469
             +I     KN +   T +L KL  ++++A  E
Sbjct  61   NYIRRQTLKNGVRFTTPELKKLEDELLEAEEE  92



Lambda      K        H        a         alpha
   0.319    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1069457930


Query= TCONS_00000238

Length=248
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461579 pfam05192, MutS_III, MutS domain III. This domain is f...  92.9    7e-23


>CDD:461579 pfam05192, MutS_III, MutS domain III.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam00488, pfam05188, pfam01624 
and pfam05190. The MutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles in 
DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
III, which is central to the structure of Thermus aquaticus 
MutS as characterized in.
Length=291

 Score = 92.9 bits (231),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 1/88 (1%)

Query  102  STIVSLELIQNLQNAKSEDSLLGLLNETLTPMGARLLRANILQPCTEKSKLLARYDAVED  161
            +T+ +LEL +NL+  K E SLLGLL+ T TPMG+RLLR  +LQP T+  ++  R DAVE+
Sbjct  1    ATLRNLELTENLRGGK-EGSLLGLLDRTKTPMGSRLLRQWLLQPLTDLEEINERLDAVEE  59

Query  162  LSTKEDMFISVRQALKGFIDADKVLTSL  189
            L    ++   +R+ L+   D +++L+ +
Sbjct  60   LLENSELREDLRELLRRLPDLERLLSRI  87



Lambda      K        H        a         alpha
   0.319    0.133    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00006483

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425714 pfam00488, MutS_V, MutS domain V. This domain is found...  205     4e-64
CDD:461579 pfam05192, MutS_III, MutS domain III. This domain is f...  84.4    1e-18
CDD:398730 pfam05190, MutS_IV, MutS family domain IV. This domain...  58.8    2e-11


>CDD:425714 pfam00488, MutS_V, MutS domain V.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam01624, pfam05188, pfam05192 and 
pfam05190. The mutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
V of Thermus aquaticus MutS, which contains a Walker A motif, 
and is structurally similar to the ATPase domain of ABC transporters.
Length=188

 Score = 205 bits (524),  Expect = 4e-64, Method: Composition-based stats.
 Identities = 90/190 (47%), Positives = 119/190 (63%), Gaps = 4/190 (2%)

Query  250  QIITGSNMSGKSTYIRSLALMTIMAQIGCFVPAEYASFPVMHQLFARVSTSDDLEANVST  309
             IITG NM GKSTY+R +AL+ +MAQIG FVPAE A   ++ ++F R+  SDDL    ST
Sbjct  1    LIITGPNMGGKSTYLRQVALIVLMAQIGSFVPAESAEIGIVDRIFTRIGASDDLAKGRST  60

Query  310  FAAEMREMAFILRNIEPRSIVIVDELGRGTSTTDGLAIAIAIAEA-LIESHALVWFVTHF  368
            F  EM E A IL N   +S+VI+DELGRGTST DGLAIA A+AE    +  A   F TH+
Sbjct  61   FMVEMLETANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIKARTLFATHY  120

Query  369  RDLALILAERNGVVSLHLAAEISPDISQMVMLYKIAEGPDTTQFYGLAVAKLVDLPPGVL  428
             +L  +  +   V +LH+AA    D   +V LYK+  G    + YG+ VA+L  LP  V+
Sbjct  121  HELTKLAEKLPAVKNLHMAAVEDDD--DIVFLYKVQPGA-ADKSYGIHVAELAGLPESVV  177

Query  429  ERAQTVSEKL  438
            ERA+ +  +L
Sbjct  178  ERAREILAEL  187


>CDD:461579 pfam05192, MutS_III, MutS domain III.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam00488, pfam05188, pfam01624 
and pfam05190. The MutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles in 
DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
III, which is central to the structure of Thermus aquaticus 
MutS as characterized in.
Length=291

 Score = 84.4 bits (209),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 42/193 (22%), Positives = 79/193 (41%), Gaps = 2/193 (1%)

Query  11   SIYKALATAQSSLLMTIRELCGPAGH-RAIEQLIEETL-NEHVTYQTKPLDLRNQRIYCV  68
            ++  +L        + + E     G   ++ +L+EE +  E          +R+     +
Sbjct  99   ALLDSLEKLPLLKELLLEEKSALLGELASLAELLEEAIDEEPPALLRDGGVIRDGYDEEL  158

Query  69   RAGVNSLLDVARQTYKEANVDAADLVAKVSESHNLTLDLKLDSARQYYISVSASEVKTLS  128
                + LLD  R   K    +      K  +     +        +YYI VS S+   + 
Sbjct  159  DELRDLLLDGKRLLAKLEARERERTGIKSLKVLYNKVFGYYLLLVEYYIEVSKSQKDKVP  218

Query  129  GIFINIYRRKNRIECQTLDLVKLNQKIMDAHNEVINMSDQTIQSLINDVCSEISVLFKVS  188
              +I I   KN     T +L +L +KI+ A   ++ +  +  + L+ +V   I VL + +
Sbjct  219  DDYIRIQTTKNAERYITPELKELERKILQAEERLLALEKELFEELLEEVLEYIEVLRRAA  278

Query  189  EAIAMLDMLAAFA  201
            EA+A LD+L + A
Sbjct  279  EALAELDVLLSLA  291


>CDD:398730 pfam05190, MutS_IV, MutS family domain IV.  This domain is found 
in proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam01624, pfam05188, pfam05192 
and pfam00488. The mutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles 
in DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a 
mismatch binding protein. The aligned region corresponds in 
part with globular domain IV, which is involved in DNA binding, 
in Thermus aquaticus MutS as characterized in.
Length=92

 Score = 58.8 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 41/92 (45%), Gaps = 1/92 (1%)

Query  71   GVNSLLDVARQTYKEANVDAADLVAKVSESHNL-TLDLKLDSARQYYISVSASEVKTLSG  129
            G +  LD  R    E   +  +L  K  E   + +L +  +    YYI V+ SE K +  
Sbjct  1    GFDEELDELRDLLDELEKELEELEKKEREKLGIKSLKVGYNKVFGYYIEVTRSEAKKVPS  60

Query  130  IFINIYRRKNRIECQTLDLVKLNQKIMDAHNE  161
             +I     KN +   T +L KL  ++++A  E
Sbjct  61   NYIRRQTLKNGVRFTTPELKKLEDELLEAEEE  92



Lambda      K        H        a         alpha
   0.319    0.131    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00006484

Length=488


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 601084202


Query= TCONS_00000239

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462552 pfam08662, eIF2A, Eukaryotic translation initiation fa...  146     7e-41


>CDD:462552 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A. 
 This is a family of eukaryotic translation initiation 
factors.
Length=194

 Score = 146 bits (371),  Expect = 7e-41, Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 101/226 (45%), Gaps = 34/226 (15%)

Query  401  RNLFNVSDVKLHWQSQGLYVCVKVD-RHSKSKKSMATNLEIFRVREKGVPVEVVDSLKD-  458
            ++ F    V+L W   G Y+ V  D    K+ KS      ++ + E G P  VV+  K+ 
Sbjct  1    KSFFKADKVQLKWNKNGTYLLVLTDTDVDKTGKSYYGETNLYLIGETGGPDCVVELDKEG  60

Query  459  TVINFAWEPNGNRFVLITTGEAVAGAAVAPKTAVSFFAPEKKGGAIGNFKLIRTIEKKNS  518
             + + AW PNG  F +I            P   VSFF  + KG       +I +  ++  
Sbjct  61   PIHDVAWSPNGKEFAVI--------YGYMPAK-VSFF--DLKG------NVIHSFGEQPR  103

Query  519  NAIYWSPKGRFVVVATVHSQTSFDMDFWDMDFEGEKPEAEKDFAANLQLMKTTEHYGVTD  578
            N I+WSP GR V++A   +  + D++FWD+               N + + T E    T 
Sbjct  104  NTIFWSPFGRLVLLAGFGN-LAGDIEFWDVV--------------NKKKIATAEASNATL  148

Query  579  IDWDPTGRYVVSSASVWTHQLENGWNLHTFAGQTLSENPTDKFKQF  624
             +W P GRY +++ +    +++NG+ +  + G  + +   D+  Q 
Sbjct  149  CEWSPDGRYFLTATTAPRLRVDNGFKIWHYNGALVYKYDFDELYQV  194



Lambda      K        H        a         alpha
   0.315    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00000240

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462552 pfam08662, eIF2A, Eukaryotic translation initiation fa...  145     5e-41


>CDD:462552 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A. 
 This is a family of eukaryotic translation initiation 
factors.
Length=194

 Score = 145 bits (369),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 101/226 (45%), Gaps = 34/226 (15%)

Query  277  RNLFNVSDVKLHWQSQGLYVCVKVD-RHSKSKKSMATNLEIFRVREKGVPVEVVDSLKD-  334
            ++ F    V+L W   G Y+ V  D    K+ KS      ++ + E G P  VV+  K+ 
Sbjct  1    KSFFKADKVQLKWNKNGTYLLVLTDTDVDKTGKSYYGETNLYLIGETGGPDCVVELDKEG  60

Query  335  TVINFAWEPNGNRFVLITTGEAVAGAAVAPKTAVSFFAPEKKGGAIGNFKLIRTIEKKNS  394
             + + AW PNG  F +I            P   VSFF  + KG       +I +  ++  
Sbjct  61   PIHDVAWSPNGKEFAVI--------YGYMPAK-VSFF--DLKG------NVIHSFGEQPR  103

Query  395  NAIYWSPKGRFVVVATVHSQTSFDMDFWDMDFEGEKPEAEKDFAANLQLMKTTEHYGVTD  454
            N I+WSP GR V++A   +  + D++FWD+               N + + T E    T 
Sbjct  104  NTIFWSPFGRLVLLAGFGN-LAGDIEFWDVV--------------NKKKIATAEASNATL  148

Query  455  IDWDPTGRYVVSSASVWTHQLENGWNLHTFAGQTLSENPTDKFKQF  500
             +W P GRY +++ +    +++NG+ +  + G  + +   D+  Q 
Sbjct  149  CEWSPDGRYFLTATTAPRLRVDNGFKIWHYNGALVYKYDFDELYQV  194



Lambda      K        H        a         alpha
   0.315    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 783080272


Query= TCONS_00000241

Length=724
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462552 pfam08662, eIF2A, Eukaryotic translation initiation fa...  135     6e-37


>CDD:462552 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A. 
 This is a family of eukaryotic translation initiation 
factors.
Length=194

 Score = 135 bits (341),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 34/201 (17%)

Query  401  RNLFNVSDVKLHWQSQGLYVCVKVD-RHSKSKKSMATNLEIFRVREKGVPVEVVDSLKD-  458
            ++ F    V+L W   G Y+ V  D    K+ KS      ++ + E G P  VV+  K+ 
Sbjct  1    KSFFKADKVQLKWNKNGTYLLVLTDTDVDKTGKSYYGETNLYLIGETGGPDCVVELDKEG  60

Query  459  TVINFAWEPNGNRFVLITTGEAVAGAAVAPKTAVSFFAPEKKGGAIGNFKLIRTIEKKNS  518
             + + AW PNG  F +I            P   VSFF  + KG       +I +  ++  
Sbjct  61   PIHDVAWSPNGKEFAVI--------YGYMPAK-VSFF--DLKG------NVIHSFGEQPR  103

Query  519  NAIYWSPKGRFVVVATVHSQTSFDMDFWDMDFEGEKPEAEKDFAANLQLMKTTEHYGVTD  578
            N I+WSP GR V++A   +  + D++FWD+               N + + T E    T 
Sbjct  104  NTIFWSPFGRLVLLAGFGN-LAGDIEFWDVV--------------NKKKIATAEASNATL  148

Query  579  IDWDPTGRYVVSSASVWTHQV  599
             +W P GRY +++ +    +V
Sbjct  149  CEWSPDGRYFLTATTAPRLRV  169



Lambda      K        H        a         alpha
   0.317    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 916745760


Query= TCONS_00006485

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462552 pfam08662, eIF2A, Eukaryotic translation initiation fa...  146     7e-41


>CDD:462552 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A. 
 This is a family of eukaryotic translation initiation 
factors.
Length=194

 Score = 146 bits (371),  Expect = 7e-41, Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 101/226 (45%), Gaps = 34/226 (15%)

Query  401  RNLFNVSDVKLHWQSQGLYVCVKVD-RHSKSKKSMATNLEIFRVREKGVPVEVVDSLKD-  458
            ++ F    V+L W   G Y+ V  D    K+ KS      ++ + E G P  VV+  K+ 
Sbjct  1    KSFFKADKVQLKWNKNGTYLLVLTDTDVDKTGKSYYGETNLYLIGETGGPDCVVELDKEG  60

Query  459  TVINFAWEPNGNRFVLITTGEAVAGAAVAPKTAVSFFAPEKKGGAIGNFKLIRTIEKKNS  518
             + + AW PNG  F +I            P   VSFF  + KG       +I +  ++  
Sbjct  61   PIHDVAWSPNGKEFAVI--------YGYMPAK-VSFF--DLKG------NVIHSFGEQPR  103

Query  519  NAIYWSPKGRFVVVATVHSQTSFDMDFWDMDFEGEKPEAEKDFAANLQLMKTTEHYGVTD  578
            N I+WSP GR V++A   +  + D++FWD+               N + + T E    T 
Sbjct  104  NTIFWSPFGRLVLLAGFGN-LAGDIEFWDVV--------------NKKKIATAEASNATL  148

Query  579  IDWDPTGRYVVSSASVWTHQLENGWNLHTFAGQTLSENPTDKFKQF  624
             +W P GRY +++ +    +++NG+ +  + G  + +   D+  Q 
Sbjct  149  CEWSPDGRYFLTATTAPRLRVDNGFKIWHYNGALVYKYDFDELYQV  194



Lambda      K        H        a         alpha
   0.315    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00000243

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family              397     8e-142


>CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family.  
Length=219

 Score = 397 bits (1022),  Expect = 8e-142, Method: Composition-based stats.
 Identities = 135/220 (61%), Positives = 155/220 (70%), Gaps = 1/220 (0%)

Query  86   WEHAKWNKTFDHAALRRGFQVYREVCASCHSLTRVPWRSFVGVMHTVDEMKAFAEEHEYD  145
            W       TFD A LRRG+QVY+EVCA+CHSL  V +R+      T DE+KA A E+E  
Sbjct  1    WSFEGPFGTFDKAQLRRGYQVYKEVCAACHSLKYVAFRNLADPGFTEDEVKAIAAEYEVP  60

Query  146  TEPNDQGEIEKRPGKLSDYIPPPYKNEEAARAANGGALPPDLSLIVKGRHGGCNYIFSLL  205
              PND+GE+ +RPGK SDY P PY NEEAARAAN GA PPDLSLI K RHGG +YI+SLL
Sbjct  61   DGPNDEGEMFERPGKPSDYFPSPYPNEEAARAANNGAYPPDLSLIAKARHGGPDYIYSLL  120

Query  206  TGYPDEPPAGAQVAEGMNFNPYFPGTGIAMARVLFDGVVEYEDGTPATTSQMAKDVTEFL  265
            TGY D PPAG ++ EG+ +NPYFPG  IAM   L DG VEYEDGTPAT SQMAKDV  FL
Sbjct  121  TGYED-PPAGVELPEGLYYNPYFPGGAIAMPPPLSDGQVEYEDGTPATVSQMAKDVVAFL  179

Query  266  NWAAEPEMDDRKKMGAKALVILTGLFALSVWVKRYKWAPI  305
             WAAEPE+D RK+MG K ++ L  L  L    KR  WAPI
Sbjct  180  MWAAEPELDARKQMGLKVILFLLILTVLLYLTKRRIWAPI  219



Lambda      K        H        a         alpha
   0.317    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00000244

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family              354     1e-125


>CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family.  
Length=219

 Score = 354 bits (912),  Expect = 1e-125, Method: Composition-based stats.
 Identities = 121/189 (64%), Positives = 138/189 (73%), Gaps = 1/189 (1%)

Query  86   WEHAKWNKTFDHAALRRGFQVYREVCASCHSLTRVPWRSFVGVMHTVDEMKAFAEEHEYD  145
            W       TFD A LRRG+QVY+EVCA+CHSL  V +R+      T DE+KA A E+E  
Sbjct  1    WSFEGPFGTFDKAQLRRGYQVYKEVCAACHSLKYVAFRNLADPGFTEDEVKAIAAEYEVP  60

Query  146  TEPNDQGEIEKRPGKLSDYIPPPYKNEEAARAANGGALPPDLSLIVKGRHGGCNYIFSLL  205
              PND+GE+ +RPGK SDY P PY NEEAARAAN GA PPDLSLI K RHGG +YI+SLL
Sbjct  61   DGPNDEGEMFERPGKPSDYFPSPYPNEEAARAANNGAYPPDLSLIAKARHGGPDYIYSLL  120

Query  206  TGYPDEPPAGAQVAEGMNFNPYFPGTGIAMARVLFDGVVEYEDGTPATTSQMAKDVTEFL  265
            TGY D PPAG ++ EG+ +NPYFPG  IAM   L DG VEYEDGTPAT SQMAKDV  FL
Sbjct  121  TGYED-PPAGVELPEGLYYNPYFPGGAIAMPPPLSDGQVEYEDGTPATVSQMAKDVVAFL  179

Query  266  NWAAEPEMD  274
             WAAEPE+D
Sbjct  180  MWAAEPELD  188



Lambda      K        H        a         alpha
   0.315    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00006486

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family              397     8e-142


>CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family.  
Length=219

 Score = 397 bits (1022),  Expect = 8e-142, Method: Composition-based stats.
 Identities = 135/220 (61%), Positives = 155/220 (70%), Gaps = 1/220 (0%)

Query  86   WEHAKWNKTFDHAALRRGFQVYREVCASCHSLTRVPWRSFVGVMHTVDEMKAFAEEHEYD  145
            W       TFD A LRRG+QVY+EVCA+CHSL  V +R+      T DE+KA A E+E  
Sbjct  1    WSFEGPFGTFDKAQLRRGYQVYKEVCAACHSLKYVAFRNLADPGFTEDEVKAIAAEYEVP  60

Query  146  TEPNDQGEIEKRPGKLSDYIPPPYKNEEAARAANGGALPPDLSLIVKGRHGGCNYIFSLL  205
              PND+GE+ +RPGK SDY P PY NEEAARAAN GA PPDLSLI K RHGG +YI+SLL
Sbjct  61   DGPNDEGEMFERPGKPSDYFPSPYPNEEAARAANNGAYPPDLSLIAKARHGGPDYIYSLL  120

Query  206  TGYPDEPPAGAQVAEGMNFNPYFPGTGIAMARVLFDGVVEYEDGTPATTSQMAKDVTEFL  265
            TGY D PPAG ++ EG+ +NPYFPG  IAM   L DG VEYEDGTPAT SQMAKDV  FL
Sbjct  121  TGYED-PPAGVELPEGLYYNPYFPGGAIAMPPPLSDGQVEYEDGTPATVSQMAKDVVAFL  179

Query  266  NWAAEPEMDDRKKMGAKALVILTGLFALSVWVKRYKWAPI  305
             WAAEPE+D RK+MG K ++ L  L  L    KR  WAPI
Sbjct  180  MWAAEPELDARKQMGLKVILFLLILTVLLYLTKRRIWAPI  219



Lambda      K        H        a         alpha
   0.317    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00006487

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family              397     8e-142


>CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family.  
Length=219

 Score = 397 bits (1022),  Expect = 8e-142, Method: Composition-based stats.
 Identities = 135/220 (61%), Positives = 155/220 (70%), Gaps = 1/220 (0%)

Query  86   WEHAKWNKTFDHAALRRGFQVYREVCASCHSLTRVPWRSFVGVMHTVDEMKAFAEEHEYD  145
            W       TFD A LRRG+QVY+EVCA+CHSL  V +R+      T DE+KA A E+E  
Sbjct  1    WSFEGPFGTFDKAQLRRGYQVYKEVCAACHSLKYVAFRNLADPGFTEDEVKAIAAEYEVP  60

Query  146  TEPNDQGEIEKRPGKLSDYIPPPYKNEEAARAANGGALPPDLSLIVKGRHGGCNYIFSLL  205
              PND+GE+ +RPGK SDY P PY NEEAARAAN GA PPDLSLI K RHGG +YI+SLL
Sbjct  61   DGPNDEGEMFERPGKPSDYFPSPYPNEEAARAANNGAYPPDLSLIAKARHGGPDYIYSLL  120

Query  206  TGYPDEPPAGAQVAEGMNFNPYFPGTGIAMARVLFDGVVEYEDGTPATTSQMAKDVTEFL  265
            TGY D PPAG ++ EG+ +NPYFPG  IAM   L DG VEYEDGTPAT SQMAKDV  FL
Sbjct  121  TGYED-PPAGVELPEGLYYNPYFPGGAIAMPPPLSDGQVEYEDGTPATVSQMAKDVVAFL  179

Query  266  NWAAEPEMDDRKKMGAKALVILTGLFALSVWVKRYKWAPI  305
             WAAEPE+D RK+MG K ++ L  L  L    KR  WAPI
Sbjct  180  MWAAEPELDARKQMGLKVILFLLILTVLLYLTKRRIWAPI  219



Lambda      K        H        a         alpha
   0.317    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00000247

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family              290     9e-101


>CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family.  
Length=219

 Score = 290 bits (745),  Expect = 9e-101, Method: Composition-based stats.
 Identities = 98/161 (61%), Positives = 114/161 (71%), Gaps = 1/161 (1%)

Query  86   WEHAKWNKTFDHAALRRGFQVYREVCASCHSLTRVPWRSFVGVMHTVDEMKAFAEEHEYD  145
            W       TFD A LRRG+QVY+EVCA+CHSL  V +R+      T DE+KA A E+E  
Sbjct  1    WSFEGPFGTFDKAQLRRGYQVYKEVCAACHSLKYVAFRNLADPGFTEDEVKAIAAEYEVP  60

Query  146  TEPNDQGEIEKRPGKLSDYIPPPYKNEEAARAANGGALPPDLSLIVKGRHGGCNYIFSLL  205
              PND+GE+ +RPGK SDY P PY NEEAARAAN GA PPDLSLI K RHGG +YI+SLL
Sbjct  61   DGPNDEGEMFERPGKPSDYFPSPYPNEEAARAANNGAYPPDLSLIAKARHGGPDYIYSLL  120

Query  206  TGYPDEPPAGAQVAEGMNFNPYFPGTGIAMARVLFDGVVEY  246
            TGY D PPAG ++ EG+ +NPYFPG  IAM   L DG VEY
Sbjct  121  TGYED-PPAGVELPEGLYYNPYFPGGAIAMPPPLSDGQVEY  160



Lambda      K        H        a         alpha
   0.316    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00000246

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family              290     9e-101


>CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family.  
Length=219

 Score = 290 bits (745),  Expect = 9e-101, Method: Composition-based stats.
 Identities = 98/161 (61%), Positives = 114/161 (71%), Gaps = 1/161 (1%)

Query  86   WEHAKWNKTFDHAALRRGFQVYREVCASCHSLTRVPWRSFVGVMHTVDEMKAFAEEHEYD  145
            W       TFD A LRRG+QVY+EVCA+CHSL  V +R+      T DE+KA A E+E  
Sbjct  1    WSFEGPFGTFDKAQLRRGYQVYKEVCAACHSLKYVAFRNLADPGFTEDEVKAIAAEYEVP  60

Query  146  TEPNDQGEIEKRPGKLSDYIPPPYKNEEAARAANGGALPPDLSLIVKGRHGGCNYIFSLL  205
              PND+GE+ +RPGK SDY P PY NEEAARAAN GA PPDLSLI K RHGG +YI+SLL
Sbjct  61   DGPNDEGEMFERPGKPSDYFPSPYPNEEAARAANNGAYPPDLSLIAKARHGGPDYIYSLL  120

Query  206  TGYPDEPPAGAQVAEGMNFNPYFPGTGIAMARVLFDGVVEY  246
            TGY D PPAG ++ EG+ +NPYFPG  IAM   L DG VEY
Sbjct  121  TGYED-PPAGVELPEGLYYNPYFPGGAIAMPPPLSDGQVEY  160



Lambda      K        H        a         alpha
   0.316    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00000248

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family              265     9e-91


>CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family.  
Length=219

 Score = 265 bits (679),  Expect = 9e-91, Method: Composition-based stats.
 Identities = 91/152 (60%), Positives = 109/152 (72%), Gaps = 2/152 (1%)

Query  86   WEHAKWNKTFDHAALRRGFQVYREVCASCHSLTRVPWRSFVGVMHTVDEMKAFAEEHEYD  145
            W       TFD A LRRG+QVY+EVCA+CHSL  V +R+      T DE+KA A E+E  
Sbjct  1    WSFEGPFGTFDKAQLRRGYQVYKEVCAACHSLKYVAFRNLADPGFTEDEVKAIAAEYEVP  60

Query  146  TEPNDQGEIEKRPGKLSDYIPPPYKNEEAARAANGGALPPDLSLIVKGRHGGCNYIFSLL  205
              PND+GE+ +RPGK SDY P PY NEEAARAAN GA PPDLSLI K RHGG +YI+SLL
Sbjct  61   DGPNDEGEMFERPGKPSDYFPSPYPNEEAARAANNGAYPPDLSLIAKARHGGPDYIYSLL  120

Query  206  TGYPDEPPAGAQVAEGMNFNPYFPGTGTFSLP  237
            TGY D PPAG ++ EG+ +NPYFPG G  ++P
Sbjct  121  TGYED-PPAGVELPEGLYYNPYFPG-GAIAMP  150



Lambda      K        H        a         alpha
   0.316    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00000249

Length=248
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family              295     1e-102


>CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family.  
Length=219

 Score = 295 bits (757),  Expect = 1e-102, Method: Composition-based stats.
 Identities = 100/163 (61%), Positives = 116/163 (71%), Gaps = 1/163 (1%)

Query  86   WEHAKWNKTFDHAALRRGFQVYREVCASCHSLTRVPWRSFVGVMHTVDEMKAFAEEHEYD  145
            W       TFD A LRRG+QVY+EVCA+CHSL  V +R+      T DE+KA A E+E  
Sbjct  1    WSFEGPFGTFDKAQLRRGYQVYKEVCAACHSLKYVAFRNLADPGFTEDEVKAIAAEYEVP  60

Query  146  TEPNDQGEIEKRPGKLSDYIPPPYKNEEAARAANGGALPPDLSLIVKGRHGGCNYIFSLL  205
              PND+GE+ +RPGK SDY P PY NEEAARAAN GA PPDLSLI K RHGG +YI+SLL
Sbjct  61   DGPNDEGEMFERPGKPSDYFPSPYPNEEAARAANNGAYPPDLSLIAKARHGGPDYIYSLL  120

Query  206  TGYPDEPPAGAQVAEGMNFNPYFPGTGIAMARVLFDGVVEYED  248
            TGY D PPAG ++ EG+ +NPYFPG  IAM   L DG VEYED
Sbjct  121  TGYED-PPAGVELPEGLYYNPYFPGGAIAMPPPLSDGQVEYED  162



Lambda      K        H        a         alpha
   0.316    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00006488

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family              397     8e-142


>CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family.  
Length=219

 Score = 397 bits (1022),  Expect = 8e-142, Method: Composition-based stats.
 Identities = 135/220 (61%), Positives = 155/220 (70%), Gaps = 1/220 (0%)

Query  86   WEHAKWNKTFDHAALRRGFQVYREVCASCHSLTRVPWRSFVGVMHTVDEMKAFAEEHEYD  145
            W       TFD A LRRG+QVY+EVCA+CHSL  V +R+      T DE+KA A E+E  
Sbjct  1    WSFEGPFGTFDKAQLRRGYQVYKEVCAACHSLKYVAFRNLADPGFTEDEVKAIAAEYEVP  60

Query  146  TEPNDQGEIEKRPGKLSDYIPPPYKNEEAARAANGGALPPDLSLIVKGRHGGCNYIFSLL  205
              PND+GE+ +RPGK SDY P PY NEEAARAAN GA PPDLSLI K RHGG +YI+SLL
Sbjct  61   DGPNDEGEMFERPGKPSDYFPSPYPNEEAARAANNGAYPPDLSLIAKARHGGPDYIYSLL  120

Query  206  TGYPDEPPAGAQVAEGMNFNPYFPGTGIAMARVLFDGVVEYEDGTPATTSQMAKDVTEFL  265
            TGY D PPAG ++ EG+ +NPYFPG  IAM   L DG VEYEDGTPAT SQMAKDV  FL
Sbjct  121  TGYED-PPAGVELPEGLYYNPYFPGGAIAMPPPLSDGQVEYEDGTPATVSQMAKDVVAFL  179

Query  266  NWAAEPEMDDRKKMGAKALVILTGLFALSVWVKRYKWAPI  305
             WAAEPE+D RK+MG K ++ L  L  L    KR  WAPI
Sbjct  180  MWAAEPELDARKQMGLKVILFLLILTVLLYLTKRRIWAPI  219



Lambda      K        H        a         alpha
   0.317    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00006489

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family              315     2e-111


>CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family.  
Length=219

 Score = 315 bits (809),  Expect = 2e-111, Method: Composition-based stats.
 Identities = 113/177 (64%), Positives = 128/177 (72%), Gaps = 1/177 (1%)

Query  1    MHTVDEMKAFAEEHEYDTEPNDQGEIEKRPGKLSDYIPPPYKNEEAARAANGGALPPDLS  60
              T DE+KA A E+E    PND+GE+ +RPGK SDY P PY NEEAARAAN GA PPDLS
Sbjct  44   GFTEDEVKAIAAEYEVPDGPNDEGEMFERPGKPSDYFPSPYPNEEAARAANNGAYPPDLS  103

Query  61   LIVKGRHGGCNYIFSLLTGYPDEPPAGAQVAEGMNFNPYFPGTGIAMARVLFDGVVEYED  120
            LI K RHGG +YI+SLLTGY D PPAG ++ EG+ +NPYFPG  IAM   L DG VEYED
Sbjct  104  LIAKARHGGPDYIYSLLTGYED-PPAGVELPEGLYYNPYFPGGAIAMPPPLSDGQVEYED  162

Query  121  GTPATTSQMAKDVTEFLNWAAEPEMDDRKKMGAKALVILTGLFALSVWVKRYKWAPI  177
            GTPAT SQMAKDV  FL WAAEPE+D RK+MG K ++ L  L  L    KR  WAPI
Sbjct  163  GTPATVSQMAKDVVAFLMWAAEPELDARKQMGLKVILFLLILTVLLYLTKRRIWAPI  219



Lambda      K        H        a         alpha
   0.316    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00000245

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family              397     8e-142


>CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family.  
Length=219

 Score = 397 bits (1022),  Expect = 8e-142, Method: Composition-based stats.
 Identities = 135/220 (61%), Positives = 155/220 (70%), Gaps = 1/220 (0%)

Query  86   WEHAKWNKTFDHAALRRGFQVYREVCASCHSLTRVPWRSFVGVMHTVDEMKAFAEEHEYD  145
            W       TFD A LRRG+QVY+EVCA+CHSL  V +R+      T DE+KA A E+E  
Sbjct  1    WSFEGPFGTFDKAQLRRGYQVYKEVCAACHSLKYVAFRNLADPGFTEDEVKAIAAEYEVP  60

Query  146  TEPNDQGEIEKRPGKLSDYIPPPYKNEEAARAANGGALPPDLSLIVKGRHGGCNYIFSLL  205
              PND+GE+ +RPGK SDY P PY NEEAARAAN GA PPDLSLI K RHGG +YI+SLL
Sbjct  61   DGPNDEGEMFERPGKPSDYFPSPYPNEEAARAANNGAYPPDLSLIAKARHGGPDYIYSLL  120

Query  206  TGYPDEPPAGAQVAEGMNFNPYFPGTGIAMARVLFDGVVEYEDGTPATTSQMAKDVTEFL  265
            TGY D PPAG ++ EG+ +NPYFPG  IAM   L DG VEYEDGTPAT SQMAKDV  FL
Sbjct  121  TGYED-PPAGVELPEGLYYNPYFPGGAIAMPPPLSDGQVEYEDGTPATVSQMAKDVVAFL  179

Query  266  NWAAEPEMDDRKKMGAKALVILTGLFALSVWVKRYKWAPI  305
             WAAEPE+D RK+MG K ++ L  L  L    KR  WAPI
Sbjct  180  MWAAEPELDARKQMGLKVILFLLILTVLLYLTKRRIWAPI  219



Lambda      K        H        a         alpha
   0.317    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00006490

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family              397     8e-142


>CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family.  
Length=219

 Score = 397 bits (1022),  Expect = 8e-142, Method: Composition-based stats.
 Identities = 135/220 (61%), Positives = 155/220 (70%), Gaps = 1/220 (0%)

Query  86   WEHAKWNKTFDHAALRRGFQVYREVCASCHSLTRVPWRSFVGVMHTVDEMKAFAEEHEYD  145
            W       TFD A LRRG+QVY+EVCA+CHSL  V +R+      T DE+KA A E+E  
Sbjct  1    WSFEGPFGTFDKAQLRRGYQVYKEVCAACHSLKYVAFRNLADPGFTEDEVKAIAAEYEVP  60

Query  146  TEPNDQGEIEKRPGKLSDYIPPPYKNEEAARAANGGALPPDLSLIVKGRHGGCNYIFSLL  205
              PND+GE+ +RPGK SDY P PY NEEAARAAN GA PPDLSLI K RHGG +YI+SLL
Sbjct  61   DGPNDEGEMFERPGKPSDYFPSPYPNEEAARAANNGAYPPDLSLIAKARHGGPDYIYSLL  120

Query  206  TGYPDEPPAGAQVAEGMNFNPYFPGTGIAMARVLFDGVVEYEDGTPATTSQMAKDVTEFL  265
            TGY D PPAG ++ EG+ +NPYFPG  IAM   L DG VEYEDGTPAT SQMAKDV  FL
Sbjct  121  TGYED-PPAGVELPEGLYYNPYFPGGAIAMPPPLSDGQVEYEDGTPATVSQMAKDVVAFL  179

Query  266  NWAAEPEMDDRKKMGAKALVILTGLFALSVWVKRYKWAPI  305
             WAAEPE+D RK+MG K ++ L  L  L    KR  WAPI
Sbjct  180  MWAAEPELDARKQMGLKVILFLLILTVLLYLTKRRIWAPI  219



Lambda      K        H        a         alpha
   0.317    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00006491

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family              397     8e-142


>CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family.  
Length=219

 Score = 397 bits (1022),  Expect = 8e-142, Method: Composition-based stats.
 Identities = 135/220 (61%), Positives = 155/220 (70%), Gaps = 1/220 (0%)

Query  86   WEHAKWNKTFDHAALRRGFQVYREVCASCHSLTRVPWRSFVGVMHTVDEMKAFAEEHEYD  145
            W       TFD A LRRG+QVY+EVCA+CHSL  V +R+      T DE+KA A E+E  
Sbjct  1    WSFEGPFGTFDKAQLRRGYQVYKEVCAACHSLKYVAFRNLADPGFTEDEVKAIAAEYEVP  60

Query  146  TEPNDQGEIEKRPGKLSDYIPPPYKNEEAARAANGGALPPDLSLIVKGRHGGCNYIFSLL  205
              PND+GE+ +RPGK SDY P PY NEEAARAAN GA PPDLSLI K RHGG +YI+SLL
Sbjct  61   DGPNDEGEMFERPGKPSDYFPSPYPNEEAARAANNGAYPPDLSLIAKARHGGPDYIYSLL  120

Query  206  TGYPDEPPAGAQVAEGMNFNPYFPGTGIAMARVLFDGVVEYEDGTPATTSQMAKDVTEFL  265
            TGY D PPAG ++ EG+ +NPYFPG  IAM   L DG VEYEDGTPAT SQMAKDV  FL
Sbjct  121  TGYED-PPAGVELPEGLYYNPYFPGGAIAMPPPLSDGQVEYEDGTPATVSQMAKDVVAFL  179

Query  266  NWAAEPEMDDRKKMGAKALVILTGLFALSVWVKRYKWAPI  305
             WAAEPE+D RK+MG K ++ L  L  L    KR  WAPI
Sbjct  180  MWAAEPELDARKQMGLKVILFLLILTVLLYLTKRRIWAPI  219



Lambda      K        H        a         alpha
   0.317    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00000250

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family              299     4e-105


>CDD:426633 pfam02167, Cytochrom_C1, Cytochrome C1 family.  
Length=219

 Score = 299 bits (768),  Expect = 4e-105, Method: Composition-based stats.
 Identities = 111/178 (62%), Positives = 127/178 (71%), Gaps = 3/178 (2%)

Query  1    MHTVDEMKAFAEEHEYDTEPNDQGEIEKRPGKLSDYIPPPYKNEEAARAANGGALPPDLS  60
              T DE+KA A E+E    PND+GE+ +RPGK SDY P PY NEEAARAAN GA PPDLS
Sbjct  44   GFTEDEVKAIAAEYEVPDGPNDEGEMFERPGKPSDYFPSPYPNEEAARAANNGAYPPDLS  103

Query  61   LIVKGRHGGCNYIFSLLTGYPDEPPAGAQVAEGMNFNPYFPGTGTFSF-RVLFDGVVEYE  119
            LI K RHGG +YI+SLLTGY D PPAG ++ EG+ +NPYFPG G  +    L DG VEYE
Sbjct  104  LIAKARHGGPDYIYSLLTGYED-PPAGVELPEGLYYNPYFPG-GAIAMPPPLSDGQVEYE  161

Query  120  DGTPATTSQMAKDVTEFLNWAAEPEMDDRKKMGAKALVILTGLFALSVWVKRYKWAPI  177
            DGTPAT SQMAKDV  FL WAAEPE+D RK+MG K ++ L  L  L    KR  WAPI
Sbjct  162  DGTPATVSQMAKDVVAFLMWAAEPELDARKQMGLKVILFLLILTVLLYLTKRRIWAPI  219



Lambda      K        H        a         alpha
   0.316    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00006492

Length=1147


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1466049900


Query= TCONS_00000251

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395641 pfam00793, DAHP_synth_1, DAHP synthetase I family. Mem...  301     6e-103


>CDD:395641 pfam00793, DAHP_synth_1, DAHP synthetase I family.  Members of 
this family catalyze the first step in aromatic amino acid 
biosynthesis from chorismate. E-coli has three related synthetases, 
which are inhibited by different aromatic amino acids. 
This family also includes KDSA which has very similar catalytic 
activity but is involved in the first step of liposaccharide 
biosynthesis. The enzyme is also part of the shikimate 
pathway, EC:2.5.1.54.
Length=271

 Score = 301 bits (772),  Expect = 6e-103, Method: Composition-based stats.
 Identities = 120/269 (45%), Positives = 154/269 (57%), Gaps = 38/269 (14%)

Query  57   IVHGTDTDKQRLLVVIGPCSIHDPDMALEYCDWLLKMKEKYNDELLIVMRAYLEKPRTT-  115
            I+ G D    RLLV+ GPCSI DP+ A+EY   L K+  K   +L+I+MRAY EKPRT+ 
Sbjct  10   IIIGKD---DRLLVIAGPCSIEDPEAAMEYARRLKKLGAKL--KLIIIMRAYFEKPRTSP  64

Query  116  VGWKGLINDPDIDNSFKINKGLRTSRQLFVDLTNKGMPIASEMLDTISPQFLADCLSVGA  175
            VG+KGL NDPD++  F+I  GL             G+PIA+E+LD I PQ+LAD + +G 
Sbjct  65   VGFKGLGNDPDLNILFRIKDGL-------------GLPIATEVLDPIDPQYLADVVDIGQ  111

Query  176  VGARTTESQVHRELASGLSFPVGFKNGTDGSLDVAVDAIGSVKHPHHFLSVTKPGVVSIV  235
            +GARTTESQ   ELA GLS PVGFKNGT    D A+D + +    H FL VTK       
Sbjct  112  IGARTTESQDLLELAGGLSKPVGFKNGT----DAAIDEMLAAAEYHLFLGVTK-------  160

Query  236  GTVGNPDCFVILRGGKKGPNYDAQSIAEAKAKLTSKGLPPRLMVDCSHGNSQKNHKNQPK  295
               GN  C   +RGG +GPN +   ++         G  P +MVD SH N +K+   QP 
Sbjct  161  ---GNILCERGIRGG-EGPNRNTLDVSAVAILKEETGHLP-VMVDVSHANGRKDGGRQPL  215

Query  296  VAAVLAEQIAAGETAIMGVMIESNINEGK  324
            V  +    IA G   I G+MIE + N G 
Sbjct  216  VLPLAKAAIAVG---IDGLMIEVHPNPGN  241



Lambda      K        H        a         alpha
   0.317    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0783    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00000253

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00000252

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00006493

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00006495

Length=1364


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1742775600


Query= TCONS_00006494

Length=1201


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1541446752


Query= TCONS_00000255

Length=1310


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1668439200


Query= TCONS_00006496

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395641 pfam00793, DAHP_synth_1, DAHP synthetase I family. Mem...  337     2e-116


>CDD:395641 pfam00793, DAHP_synth_1, DAHP synthetase I family.  Members of 
this family catalyze the first step in aromatic amino acid 
biosynthesis from chorismate. E-coli has three related synthetases, 
which are inhibited by different aromatic amino acids. 
This family also includes KDSA which has very similar catalytic 
activity but is involved in the first step of liposaccharide 
biosynthesis. The enzyme is also part of the shikimate 
pathway, EC:2.5.1.54.
Length=271

 Score = 337 bits (866),  Expect = 2e-116, Method: Composition-based stats.
 Identities = 137/301 (46%), Positives = 174/301 (58%), Gaps = 40/301 (13%)

Query  57   IVHGTDTDKQRLLVVIGPCSIHDPDMALEYCDWLLKMKEKYNDELLIVMRAYLEKPRTT-  115
            I+ G D    RLLV+ GPCSI DP+ A+EY   L K+  K   +L+I+MRAY EKPRT+ 
Sbjct  10   IIIGKD---DRLLVIAGPCSIEDPEAAMEYARRLKKLGAKL--KLIIIMRAYFEKPRTSP  64

Query  116  VGWKGLINDPDIDNSFKINKGLRTSRQLFVDLTNKGMPIASEMLDTISPQFLADCLSVGA  175
            VG+KGL NDPD++  F+I  GL             G+PIA+E+LD I PQ+LAD + +G 
Sbjct  65   VGFKGLGNDPDLNILFRIKDGL-------------GLPIATEVLDPIDPQYLADVVDIGQ  111

Query  176  VGARTTESQVHRELASGLSFPVGFKNGTDGSLDVAVDAIGSVKHPHHFLSVTKPGVVSIV  235
            +GARTTESQ   ELA GLS PVGFKNGT    D A+D + +    H FL VTK       
Sbjct  112  IGARTTESQDLLELAGGLSKPVGFKNGT----DAAIDEMLAAAEYHLFLGVTK-------  160

Query  236  GTVGNPDCFVILRGGKKGPNYDAQSIAEAKAKLTSKGLPPRLMVDCSHGNSQKNHKNQPK  295
               GN  C   +RGG +GPN +   ++         G  P +MVD SH N +K+   QP 
Sbjct  161  ---GNILCERGIRGG-EGPNRNTLDVSAVAILKEETGHLP-VMVDVSHANGRKDGGRQPL  215

Query  296  VAAVLAEQIAAGETAIMGVMIESNINEGNQKVPPEGKAGLKYGVSITDACINWEDSEIVL  355
            V  +    IA G   I G+MIE + N GN      G   LKYG S TDACI WE +E++L
Sbjct  216  VLPLAKAAIAVG---IDGLMIEVHPNPGNALSD--GPQQLKYGKSETDACILWELTELLL  270

Query  356  E  356
            E
Sbjct  271  E  271



Lambda      K        H        a         alpha
   0.316    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453018240


Query= TCONS_00006497

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395641 pfam00793, DAHP_synth_1, DAHP synthetase I family. Mem...  337     2e-116


>CDD:395641 pfam00793, DAHP_synth_1, DAHP synthetase I family.  Members of 
this family catalyze the first step in aromatic amino acid 
biosynthesis from chorismate. E-coli has three related synthetases, 
which are inhibited by different aromatic amino acids. 
This family also includes KDSA which has very similar catalytic 
activity but is involved in the first step of liposaccharide 
biosynthesis. The enzyme is also part of the shikimate 
pathway, EC:2.5.1.54.
Length=271

 Score = 337 bits (866),  Expect = 2e-116, Method: Composition-based stats.
 Identities = 137/301 (46%), Positives = 174/301 (58%), Gaps = 40/301 (13%)

Query  57   IVHGTDTDKQRLLVVIGPCSIHDPDMALEYCDWLLKMKEKYNDELLIVMRAYLEKPRTT-  115
            I+ G D    RLLV+ GPCSI DP+ A+EY   L K+  K   +L+I+MRAY EKPRT+ 
Sbjct  10   IIIGKD---DRLLVIAGPCSIEDPEAAMEYARRLKKLGAKL--KLIIIMRAYFEKPRTSP  64

Query  116  VGWKGLINDPDIDNSFKINKGLRTSRQLFVDLTNKGMPIASEMLDTISPQFLADCLSVGA  175
            VG+KGL NDPD++  F+I  GL             G+PIA+E+LD I PQ+LAD + +G 
Sbjct  65   VGFKGLGNDPDLNILFRIKDGL-------------GLPIATEVLDPIDPQYLADVVDIGQ  111

Query  176  VGARTTESQVHRELASGLSFPVGFKNGTDGSLDVAVDAIGSVKHPHHFLSVTKPGVVSIV  235
            +GARTTESQ   ELA GLS PVGFKNGT    D A+D + +    H FL VTK       
Sbjct  112  IGARTTESQDLLELAGGLSKPVGFKNGT----DAAIDEMLAAAEYHLFLGVTK-------  160

Query  236  GTVGNPDCFVILRGGKKGPNYDAQSIAEAKAKLTSKGLPPRLMVDCSHGNSQKNHKNQPK  295
               GN  C   +RGG +GPN +   ++         G  P +MVD SH N +K+   QP 
Sbjct  161  ---GNILCERGIRGG-EGPNRNTLDVSAVAILKEETGHLP-VMVDVSHANGRKDGGRQPL  215

Query  296  VAAVLAEQIAAGETAIMGVMIESNINEGNQKVPPEGKAGLKYGVSITDACINWEDSEIVL  355
            V  +    IA G   I G+MIE + N GN      G   LKYG S TDACI WE +E++L
Sbjct  216  VLPLAKAAIAVG---IDGLMIEVHPNPGNALSD--GPQQLKYGKSETDACILWELTELLL  270

Query  356  E  356
            E
Sbjct  271  E  271



Lambda      K        H        a         alpha
   0.316    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453018240


Query= TCONS_00006498

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395641 pfam00793, DAHP_synth_1, DAHP synthetase I family. Mem...  300     3e-103


>CDD:395641 pfam00793, DAHP_synth_1, DAHP synthetase I family.  Members of 
this family catalyze the first step in aromatic amino acid 
biosynthesis from chorismate. E-coli has three related synthetases, 
which are inhibited by different aromatic amino acids. 
This family also includes KDSA which has very similar catalytic 
activity but is involved in the first step of liposaccharide 
biosynthesis. The enzyme is also part of the shikimate 
pathway, EC:2.5.1.54.
Length=271

 Score = 300 bits (771),  Expect = 3e-103, Method: Composition-based stats.
 Identities = 120/269 (45%), Positives = 154/269 (57%), Gaps = 38/269 (14%)

Query  19   IVHGTDTDKQRLLVVIGPCSIHDPDMALEYCDWLLKMKEKYNDELLIVMRAYLEKPRTT-  77
            I+ G D    RLLV+ GPCSI DP+ A+EY   L K+  K   +L+I+MRAY EKPRT+ 
Sbjct  10   IIIGKD---DRLLVIAGPCSIEDPEAAMEYARRLKKLGAKL--KLIIIMRAYFEKPRTSP  64

Query  78   VGWKGLINDPDIDNSFKINKGLRTSRQLFVDLTNKGMPIASEMLDTISPQFLADCLSVGA  137
            VG+KGL NDPD++  F+I  GL             G+PIA+E+LD I PQ+LAD + +G 
Sbjct  65   VGFKGLGNDPDLNILFRIKDGL-------------GLPIATEVLDPIDPQYLADVVDIGQ  111

Query  138  VGARTTESQVHRELASGLSFPVGFKNGTDGSLDVAVDAIGSVKHPHHFLSVTKPGVVSIV  197
            +GARTTESQ   ELA GLS PVGFKNGT    D A+D + +    H FL VTK       
Sbjct  112  IGARTTESQDLLELAGGLSKPVGFKNGT----DAAIDEMLAAAEYHLFLGVTK-------  160

Query  198  GTVGNPDCFVILRGGKKGPNYDAQSIAEAKAKLTSKGLPPRLMVDCSHGNSQKNHKNQPK  257
               GN  C   +RGG +GPN +   ++         G  P +MVD SH N +K+   QP 
Sbjct  161  ---GNILCERGIRGG-EGPNRNTLDVSAVAILKEETGHLP-VMVDVSHANGRKDGGRQPL  215

Query  258  VAAVLAEQIAAGETAIMGVMIESNINEGK  286
            V  +    IA G   I G+MIE + N G 
Sbjct  216  VLPLAKAAIAVG---IDGLMIEVHPNPGN  241



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00000256

Length=885


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1134056060


Query= TCONS_00006499

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395641 pfam00793, DAHP_synth_1, DAHP synthetase I family. Mem...  336     1e-116


>CDD:395641 pfam00793, DAHP_synth_1, DAHP synthetase I family.  Members of 
this family catalyze the first step in aromatic amino acid 
biosynthesis from chorismate. E-coli has three related synthetases, 
which are inhibited by different aromatic amino acids. 
This family also includes KDSA which has very similar catalytic 
activity but is involved in the first step of liposaccharide 
biosynthesis. The enzyme is also part of the shikimate 
pathway, EC:2.5.1.54.
Length=271

 Score = 336 bits (864),  Expect = 1e-116, Method: Composition-based stats.
 Identities = 137/301 (46%), Positives = 174/301 (58%), Gaps = 40/301 (13%)

Query  19   IVHGTDTDKQRLLVVIGPCSIHDPDMALEYCDWLLKMKEKYNDELLIVMRAYLEKPRTT-  77
            I+ G D    RLLV+ GPCSI DP+ A+EY   L K+  K   +L+I+MRAY EKPRT+ 
Sbjct  10   IIIGKD---DRLLVIAGPCSIEDPEAAMEYARRLKKLGAKL--KLIIIMRAYFEKPRTSP  64

Query  78   VGWKGLINDPDIDNSFKINKGLRTSRQLFVDLTNKGMPIASEMLDTISPQFLADCLSVGA  137
            VG+KGL NDPD++  F+I  GL             G+PIA+E+LD I PQ+LAD + +G 
Sbjct  65   VGFKGLGNDPDLNILFRIKDGL-------------GLPIATEVLDPIDPQYLADVVDIGQ  111

Query  138  VGARTTESQVHRELASGLSFPVGFKNGTDGSLDVAVDAIGSVKHPHHFLSVTKPGVVSIV  197
            +GARTTESQ   ELA GLS PVGFKNGT    D A+D + +    H FL VTK       
Sbjct  112  IGARTTESQDLLELAGGLSKPVGFKNGT----DAAIDEMLAAAEYHLFLGVTK-------  160

Query  198  GTVGNPDCFVILRGGKKGPNYDAQSIAEAKAKLTSKGLPPRLMVDCSHGNSQKNHKNQPK  257
               GN  C   +RGG +GPN +   ++         G  P +MVD SH N +K+   QP 
Sbjct  161  ---GNILCERGIRGG-EGPNRNTLDVSAVAILKEETGHLP-VMVDVSHANGRKDGGRQPL  215

Query  258  VAAVLAEQIAAGETAIMGVMIESNINEGNQKVPPEGKAGLKYGVSITDACINWEDSEIVL  317
            V  +    IA G   I G+MIE + N GN      G   LKYG S TDACI WE +E++L
Sbjct  216  VLPLAKAAIAVG---IDGLMIEVHPNPGNALSD--GPQQLKYGKSETDACILWELTELLL  270

Query  318  E  318
            E
Sbjct  271  E  271



Lambda      K        H        a         alpha
   0.315    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00000257

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395641 pfam00793, DAHP_synth_1, DAHP synthetase I family. Mem...  301     6e-103


>CDD:395641 pfam00793, DAHP_synth_1, DAHP synthetase I family.  Members of 
this family catalyze the first step in aromatic amino acid 
biosynthesis from chorismate. E-coli has three related synthetases, 
which are inhibited by different aromatic amino acids. 
This family also includes KDSA which has very similar catalytic 
activity but is involved in the first step of liposaccharide 
biosynthesis. The enzyme is also part of the shikimate 
pathway, EC:2.5.1.54.
Length=271

 Score = 301 bits (772),  Expect = 6e-103, Method: Composition-based stats.
 Identities = 120/269 (45%), Positives = 154/269 (57%), Gaps = 38/269 (14%)

Query  57   IVHGTDTDKQRLLVVIGPCSIHDPDMALEYCDWLLKMKEKYNDELLIVMRAYLEKPRTT-  115
            I+ G D    RLLV+ GPCSI DP+ A+EY   L K+  K   +L+I+MRAY EKPRT+ 
Sbjct  10   IIIGKD---DRLLVIAGPCSIEDPEAAMEYARRLKKLGAKL--KLIIIMRAYFEKPRTSP  64

Query  116  VGWKGLINDPDIDNSFKINKGLRTSRQLFVDLTNKGMPIASEMLDTISPQFLADCLSVGA  175
            VG+KGL NDPD++  F+I  GL             G+PIA+E+LD I PQ+LAD + +G 
Sbjct  65   VGFKGLGNDPDLNILFRIKDGL-------------GLPIATEVLDPIDPQYLADVVDIGQ  111

Query  176  VGARTTESQVHRELASGLSFPVGFKNGTDGSLDVAVDAIGSVKHPHHFLSVTKPGVVSIV  235
            +GARTTESQ   ELA GLS PVGFKNGT    D A+D + +    H FL VTK       
Sbjct  112  IGARTTESQDLLELAGGLSKPVGFKNGT----DAAIDEMLAAAEYHLFLGVTK-------  160

Query  236  GTVGNPDCFVILRGGKKGPNYDAQSIAEAKAKLTSKGLPPRLMVDCSHGNSQKNHKNQPK  295
               GN  C   +RGG +GPN +   ++         G  P +MVD SH N +K+   QP 
Sbjct  161  ---GNILCERGIRGG-EGPNRNTLDVSAVAILKEETGHLP-VMVDVSHANGRKDGGRQPL  215

Query  296  VAAVLAEQIAAGETAIMGVMIESNINEGK  324
            V  +    IA G   I G+MIE + N G 
Sbjct  216  VLPLAKAAIAVG---IDGLMIEVHPNPGN  241



Lambda      K        H        a         alpha
   0.317    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00000260

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395641 pfam00793, DAHP_synth_1, DAHP synthetase I family. Mem...  102     7e-29


>CDD:395641 pfam00793, DAHP_synth_1, DAHP synthetase I family.  Members of 
this family catalyze the first step in aromatic amino acid 
biosynthesis from chorismate. E-coli has three related synthetases, 
which are inhibited by different aromatic amino acids. 
This family also includes KDSA which has very similar catalytic 
activity but is involved in the first step of liposaccharide 
biosynthesis. The enzyme is also part of the shikimate 
pathway, EC:2.5.1.54.
Length=271

 Score = 102 bits (257),  Expect = 7e-29, Method: Composition-based stats.
 Identities = 37/79 (47%), Positives = 45/79 (57%), Gaps = 5/79 (6%)

Query  1    MVDCSHGNSQKNHKNQPKVAAVLAEQIAAGETAIMGVMIESNINEGNQKVPPEGKAGLKY  60
            MVD SH N +K+   QP V  +    IA G   I G+MIE + N GN      G   LKY
Sbjct  198  MVDVSHANGRKDGGRQPLVLPLAKAAIAVG---IDGLMIEVHPNPGNALSD--GPQQLKY  252

Query  61   GVSITDACINWEDSEIVLE  79
            G S TDACI WE +E++LE
Sbjct  253  GKSETDACILWELTELLLE  271



Lambda      K        H        a         alpha
   0.309    0.125    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00000261

Length=708


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906995850


Query= TCONS_00000262

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462178 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-ph...  178     9e-56
CDD:395967 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-ph...  146     4e-43


>CDD:462178 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate 
dehydrogenase C-terminus.  NAD-dependent glycerol-3-phosphate 
dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone 
phosphate and L-glycerol-3-phosphate. This family 
represents the C-terminal substrate-binding domain.
Length=142

 Score = 178 bits (455),  Expect = 9e-56, Method: Composition-based stats.
 Identities = 59/139 (42%), Positives = 84/139 (60%), Gaps = 11/139 (8%)

Query  265  DVAGVSLGGALKNIVALAAGWVDGMGWGDNAKAAIMRVGLLEMVKFGEKFFGATIDTRTF  324
            DV GV LGGALKN++A+AAG  DG+G GDNAKAA++  GL EM++ G+          TF
Sbjct  1    DVIGVELGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMIRLGKALGA---KPETF  57

Query  325  TEESAGVADLITSCSGG--RNFRCAKLSIERKQPIDKIEETELNGQKLQGTLTAVEVNKF  382
                AG+ DLI +C+ G  RN R  +  + + + +++ E+    GQ  +G  TA  V + 
Sbjct  58   F-GLAGLGDLIVTCTSGLSRNRRFGEA-LGKGKSLEEAEKEL--GQVAEGVYTAKAVYEL  113

Query  383  LKKQGLEDEFPLFTAVYRM  401
             KK G+  E P+F AVYR+
Sbjct  114  AKKLGV--EMPIFEAVYRI  130


>CDD:395967 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate 
dehydrogenase N-terminus.  NAD-dependent glycerol-3-phosphate 
dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone 
phosphate and L-glycerol-3-phosphate. This family 
represents the N-terminal NAD-binding domain.
Length=158

 Score = 146 bits (371),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 59/180 (33%), Positives = 88/180 (49%), Gaps = 34/180 (19%)

Query  23   GTAIAKIVAENTASNDSLFERDVEMWVFEEKVEIPKNSRHYDPSSPLCQGPQNLTEIINK  82
            GTA+AK++A+N          +V +W  +E+                      L E IN 
Sbjct  11   GTALAKVLADNGH--------EVRLWGRDEE----------------------LIEEINT  40

Query  83   THENVKYLPGIALPENIHANPSVVDAVKDSTILIFNLPHQFINKTCEQIKGKILPYARGI  142
            THENV+YLPGI LPEN+ A   + +A+K + I++  +P Q + +  +Q+KG + P A  +
Sbjct  41   THENVRYLPGIKLPENLKATTDLAEALKGADIIVIVVPSQALREVLKQLKGLLKPDAILV  100

Query  143  SCIKGVDVTEEGVSLFSETIGKTLGIY--CGALSGANIANEVAQEKWCESSIAYDPPHLD  200
            S  KG++     + L SE I + LGI      LSG + A EVAQ     + IA       
Sbjct  101  SLSKGIE--PGTLKLLSEVIEEELGIQPPIAVLSGPSHAEEVAQGLPTATVIASKDEEAA  158



Lambda      K        H        a         alpha
   0.317    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00006500

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462178 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-ph...  178     9e-56
CDD:395967 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-ph...  146     4e-43


>CDD:462178 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate 
dehydrogenase C-terminus.  NAD-dependent glycerol-3-phosphate 
dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone 
phosphate and L-glycerol-3-phosphate. This family 
represents the C-terminal substrate-binding domain.
Length=142

 Score = 178 bits (455),  Expect = 9e-56, Method: Composition-based stats.
 Identities = 59/139 (42%), Positives = 84/139 (60%), Gaps = 11/139 (8%)

Query  265  DVAGVSLGGALKNIVALAAGWVDGMGWGDNAKAAIMRVGLLEMVKFGEKFFGATIDTRTF  324
            DV GV LGGALKN++A+AAG  DG+G GDNAKAA++  GL EM++ G+          TF
Sbjct  1    DVIGVELGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMIRLGKALGA---KPETF  57

Query  325  TEESAGVADLITSCSGG--RNFRCAKLSIERKQPIDKIEETELNGQKLQGTLTAVEVNKF  382
                AG+ DLI +C+ G  RN R  +  + + + +++ E+    GQ  +G  TA  V + 
Sbjct  58   F-GLAGLGDLIVTCTSGLSRNRRFGEA-LGKGKSLEEAEKEL--GQVAEGVYTAKAVYEL  113

Query  383  LKKQGLEDEFPLFTAVYRM  401
             KK G+  E P+F AVYR+
Sbjct  114  AKKLGV--EMPIFEAVYRI  130


>CDD:395967 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate 
dehydrogenase N-terminus.  NAD-dependent glycerol-3-phosphate 
dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone 
phosphate and L-glycerol-3-phosphate. This family 
represents the N-terminal NAD-binding domain.
Length=158

 Score = 146 bits (371),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 59/180 (33%), Positives = 88/180 (49%), Gaps = 34/180 (19%)

Query  23   GTAIAKIVAENTASNDSLFERDVEMWVFEEKVEIPKNSRHYDPSSPLCQGPQNLTEIINK  82
            GTA+AK++A+N          +V +W  +E+                      L E IN 
Sbjct  11   GTALAKVLADNGH--------EVRLWGRDEE----------------------LIEEINT  40

Query  83   THENVKYLPGIALPENIHANPSVVDAVKDSTILIFNLPHQFINKTCEQIKGKILPYARGI  142
            THENV+YLPGI LPEN+ A   + +A+K + I++  +P Q + +  +Q+KG + P A  +
Sbjct  41   THENVRYLPGIKLPENLKATTDLAEALKGADIIVIVVPSQALREVLKQLKGLLKPDAILV  100

Query  143  SCIKGVDVTEEGVSLFSETIGKTLGIY--CGALSGANIANEVAQEKWCESSIAYDPPHLD  200
            S  KG++     + L SE I + LGI      LSG + A EVAQ     + IA       
Sbjct  101  SLSKGIE--PGTLKLLSEVIEEELGIQPPIAVLSGPSHAEEVAQGLPTATVIASKDEEAA  158



Lambda      K        H        a         alpha
   0.317    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00000263

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462178 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-ph...  178     9e-56
CDD:395967 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-ph...  146     4e-43


>CDD:462178 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate 
dehydrogenase C-terminus.  NAD-dependent glycerol-3-phosphate 
dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone 
phosphate and L-glycerol-3-phosphate. This family 
represents the C-terminal substrate-binding domain.
Length=142

 Score = 178 bits (455),  Expect = 9e-56, Method: Composition-based stats.
 Identities = 59/139 (42%), Positives = 84/139 (60%), Gaps = 11/139 (8%)

Query  265  DVAGVSLGGALKNIVALAAGWVDGMGWGDNAKAAIMRVGLLEMVKFGEKFFGATIDTRTF  324
            DV GV LGGALKN++A+AAG  DG+G GDNAKAA++  GL EM++ G+          TF
Sbjct  1    DVIGVELGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMIRLGKALGA---KPETF  57

Query  325  TEESAGVADLITSCSGG--RNFRCAKLSIERKQPIDKIEETELNGQKLQGTLTAVEVNKF  382
                AG+ DLI +C+ G  RN R  +  + + + +++ E+    GQ  +G  TA  V + 
Sbjct  58   F-GLAGLGDLIVTCTSGLSRNRRFGEA-LGKGKSLEEAEKEL--GQVAEGVYTAKAVYEL  113

Query  383  LKKQGLEDEFPLFTAVYRM  401
             KK G+  E P+F AVYR+
Sbjct  114  AKKLGV--EMPIFEAVYRI  130


>CDD:395967 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate 
dehydrogenase N-terminus.  NAD-dependent glycerol-3-phosphate 
dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone 
phosphate and L-glycerol-3-phosphate. This family 
represents the N-terminal NAD-binding domain.
Length=158

 Score = 146 bits (371),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 59/180 (33%), Positives = 88/180 (49%), Gaps = 34/180 (19%)

Query  23   GTAIAKIVAENTASNDSLFERDVEMWVFEEKVEIPKNSRHYDPSSPLCQGPQNLTEIINK  82
            GTA+AK++A+N          +V +W  +E+                      L E IN 
Sbjct  11   GTALAKVLADNGH--------EVRLWGRDEE----------------------LIEEINT  40

Query  83   THENVKYLPGIALPENIHANPSVVDAVKDSTILIFNLPHQFINKTCEQIKGKILPYARGI  142
            THENV+YLPGI LPEN+ A   + +A+K + I++  +P Q + +  +Q+KG + P A  +
Sbjct  41   THENVRYLPGIKLPENLKATTDLAEALKGADIIVIVVPSQALREVLKQLKGLLKPDAILV  100

Query  143  SCIKGVDVTEEGVSLFSETIGKTLGIY--CGALSGANIANEVAQEKWCESSIAYDPPHLD  200
            S  KG++     + L SE I + LGI      LSG + A EVAQ     + IA       
Sbjct  101  SLSKGIE--PGTLKLLSEVIEEELGIQPPIAVLSGPSHAEEVAQGLPTATVIASKDEEAA  158



Lambda      K        H        a         alpha
   0.317    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00000264

Length=617
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This P...  100     3e-25
CDD:459627 pfam00004, AAA, ATPase family associated with various ...  66.1    1e-13


>CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily).  This Pfam entry 
includes some of the AAA proteins not detected by the pfam00004 
model.
Length=168

 Score = 100 bits (251),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 80/289 (28%), Gaps = 137/289 (47%)

Query  186  EKSNILLLGPSGVGKTLMAKTLARVLSV---PFSISDCTPFTQAGYIGEDAEVCVHRLLA  242
               + L LGP+GVGKT +AK LA +L          D + + +           V RL+ 
Sbjct  2    PIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHS--------VSRLIG  53

Query  243  AANYDVEQAERG------------IIVLDEVDKIAAAKVSHGKDVSGEGVQQALLKIIEG  290
            A    V   E G            I+++DE++K               GVQ  LL+I+EG
Sbjct  54   APPGYVGYEEGGQLTEAVRRKPYSIVLIDEIEKAHP------------GVQNDLLQILEG  101

Query  291  TTVQVQAKQERNAHRTSGTPSSYPSNNPFGNSPFSQSPTGNAPQKGEIYNVRTDNILFIF  350
             T+    KQ R                                       V   N LFI 
Sbjct  102  GTLTD--KQGR--------------------------------------TVDFKNTLFIM  121

Query  351  SGAFVGLHKVIMDRISHGSMGFGQPVRSQSSPTHRPGDPLATTPNQPVPILPGSEEEALY  410
            +G F         R+                                     G   +   
Sbjct  122  TGNFGSEKISDASRL-------------------------------------GDSPDYEL  144

Query  411  KKHLPFFTAASPTSPDGEPPYFNALDLLNPTDLQNYGFIPELIGRIPVT  459
             K                             DL   GFIPE +GR+P+ 
Sbjct  145  LKEE-------------------------VMDLLKKGFIPEFLGRLPII  168


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 66.1 bits (162),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query  190  ILLLGPSGVGKTLMAKTLARVLSVPF---SISDCTPFTQAGYIGEDAEVCVHRLLAAANY  246
            +LL GP G GKT +AK +A+ L  PF   S S+        Y+GE  +  +  L  AA  
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVS----KYVGESEKR-LRELFEAA--  53

Query  247  DVEQAERGIIVLDEVDKIAAAKVSHGKDVSGEGVQQALLKIIEGTT  292
              ++    +I +DE+D +A ++ S G   S   V   LL  ++G T
Sbjct  54   --KKLAPCVIFIDEIDALAGSRGSGGDSES-RRVVNQLLTELDGFT  96



Lambda      K        H        a         alpha
   0.316    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784574700


Query= TCONS_00006501

Length=178
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464660 pfam15341, SLX9, Ribosome biogenesis protein SLX9. SLX...  95.8    1e-26


>CDD:464660 pfam15341, SLX9, Ribosome biogenesis protein SLX9.  SLX9 is present 
in pre-ribosomes from an early stage and is implicated 
in the processing events that remove the ITS1 spacer sequences. 
In eukaryotes, biogenesis of ribosomes starts in the nucleolus 
with transcription by RNA polymerase I of a large precursor 
RNA molecule, called 35S pre-rRNA in yeast, in which 
the 18S, 5.8S, and 25S mature rRNAs reside, while RNA polymerase 
III transcribes a 3'-extended pre-5S rRNA. The 35S precursor 
also contains external transcribed spacer elements (5' 
and 3'-ETS) at either end as well as internal transcribed 
spacers (ITS1 and ITS2) that separate the mature sequences.
Length=118

 Score = 95.8 bits (239),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 66/137 (48%), Positives = 85/137 (62%), Gaps = 23/137 (17%)

Query  35   DFRTTKRDKRIIKHASFVSKIEKSS----QKTPKRRRASKKLVANLESLADALPETETEK  90
             FR +K+DKR IK  +F+SKIEKS     ++  K RR SKKLV +L+SLADALPE E E+
Sbjct  1    KFRLSKKDKRKIKREAFLSKIEKSKSALKRRKKKARRPSKKLVGDLDSLADALPELEEEE  60

Query  91   NDSSSQVNIIKQKTLQHKPGAMKRRQKLEKVERDRFAKNMAQMATIQTNVQPVAETQNEA  150
             D S++ +  KQK+L+ KPGA KR++KLEK ER+RF K +A                   
Sbjct  61   TDKSTKPS--KQKSLKSKPGAAKRKKKLEKEERERFQKVLAH-----------------P  101

Query  151  SSISNRWAALRNFISQT  167
            S  SN +AALR  IS T
Sbjct  102  SFKSNPFAALREHISNT  118



Lambda      K        H        a         alpha
   0.308    0.120    0.317    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00000265

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This P...  68.0    4e-14


>CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily).  This Pfam entry 
includes some of the AAA proteins not detected by the pfam00004 
model.
Length=168

 Score = 68.0 bits (167),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 69/272 (25%), Gaps = 137/272 (50%)

Query  1    MAKTLARVLSV---PFSISDCTPFTQAGYIGEDAEVCVHRLLAAANYDVEQAERG-----  52
            +AK LA +L          D + + +           V RL+ A    V   E G     
Sbjct  19   LAKALAELLFGDERALIRIDMSEYMEEHS--------VSRLIGAPPGYVGYEEGGQLTEA  70

Query  53   -------IIVLDEVDKIAAAKVSHGKDVSGEGVQQALLKIIEGTTVQVQAKQERNAHRTS  105
                   I+++DE++K               GVQ  LL+I+EG T+    KQ R      
Sbjct  71   VRRKPYSIVLIDEIEKAHP------------GVQNDLLQILEGGTLTD--KQGR------  110

Query  106  GTPSSYPSNNPFGNSPFSQSPTGNAPQKGEIYNVRTDNILFIFSGAFVGLHKVIMDRISH  165
                                             V   N LFI +G F         R+  
Sbjct  111  --------------------------------TVDFKNTLFIMTGNFGSEKISDASRL--  136

Query  166  GSMGFGQPVRSQSSPTHRPGDPLATTPNQPVPILPGSEEEALYKKHLPFFTAASPTSPDG  225
                                               G   +    K               
Sbjct  137  -----------------------------------GDSPDYELLKEE-------------  148

Query  226  EPPYFNALDLLNPTDLQNYGFIPELIGRIPVT  257
                          DL   GFIPE +GR+P+ 
Sbjct  149  ------------VMDLLKKGFIPEFLGRLPII  168



Lambda      K        H        a         alpha
   0.315    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00000266

Length=638
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This P...  99.2    1e-24
CDD:459627 pfam00004, AAA, ATPase family associated with various ...  64.9    3e-13


>CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily).  This Pfam entry 
includes some of the AAA proteins not detected by the pfam00004 
model.
Length=168

 Score = 99.2 bits (248),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 80/289 (28%), Gaps = 137/289 (47%)

Query  207  EKSNILLLGPSGVGKTLMAKTLARVLSV---PFSISDCTPFTQAGYIGEDAEVCVHRLLA  263
               + L LGP+GVGKT +AK LA +L          D + + +           V RL+ 
Sbjct  2    PIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHS--------VSRLIG  53

Query  264  AANYDVEQAERG------------IIVLDEVDKIAAAKVSHGKDVSGEGVQQALLKIIEG  311
            A    V   E G            I+++DE++K               GVQ  LL+I+EG
Sbjct  54   APPGYVGYEEGGQLTEAVRRKPYSIVLIDEIEKAHP------------GVQNDLLQILEG  101

Query  312  TTVQVQAKQERNAHRTSGTPSSYPSNNPFGNSPFSQSPTGNAPQKGEIYNVRTDNILFIF  371
             T+    KQ R                                       V   N LFI 
Sbjct  102  GTLTD--KQGR--------------------------------------TVDFKNTLFIM  121

Query  372  SGAFVGLHKVIMDRISHGSMGFGQPVRSQSSPTHRPGDPLATTPNQPVPILPGSEEEALY  431
            +G F         R+                                     G   +   
Sbjct  122  TGNFGSEKISDASRL-------------------------------------GDSPDYEL  144

Query  432  KKHLPFFTAASPTSPDGEPPYFNALDLLNPTDLQNYGFIPELIGRIPVT  480
             K                             DL   GFIPE +GR+P+ 
Sbjct  145  LKEE-------------------------VMDLLKKGFIPEFLGRLPII  168


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 64.9 bits (159),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query  211  ILLLGPSGVGKTLMAKTLARVLSVPF---SISDCTPFTQAGYIGEDAEVCVHRLLAAANY  267
            +LL GP G GKT +AK +A+ L  PF   S S+        Y+GE  +  +  L  AA  
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVS----KYVGESEKR-LRELFEAA--  53

Query  268  DVEQAERGIIVLDEVDKIAAAKVSHGKDVSGEGVQQALLKIIEGTT  313
              ++    +I +DE+D +A ++ S G   S   V   LL  ++G T
Sbjct  54   --KKLAPCVIFIDEIDALAGSRGSGGDSES-RRVVNQLLTELDGFT  96



Lambda      K        H        a         alpha
   0.316    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 803760550


Query= TCONS_00000267

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  269     4e-94
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  154     2e-49


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 269 bits (691),  Expect = 4e-94, Method: Composition-based stats.
 Identities = 88/162 (54%), Positives = 117/162 (72%), Gaps = 0/162 (0%)

Query  11   KVVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQVDSKTIKAQIWDTAGQER  70
            K+VL+GD GVGKS+LL RFT+N+F  +   TIGV+F T++I+VD KT+K QIWDTAGQER
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  71   YRAITSAYYRGAVGALLVYDISKHQTYDNVNRWLKELRDHADSNIVIMLVGNKSDLRHLR  130
            +RA+   YYRGA G LLVYDI+   +++NV +W++E+  HAD N+ I+LVGNK DL   R
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVKKWVEEILRHADENVPIVLVGNKCDLEDQR  120

Query  131  AVPTDEAKQFASENNLSFIETSALDASNVELAFQNILTEIYR  172
             V T+E +  A E  L F+ETSA    NVE AF+ +  EI +
Sbjct  121  VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK  162


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 154 bits (393),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 62/118 (53%), Positives = 83/118 (70%), Gaps = 7/118 (6%)

Query  11   KVVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQVDS---KTIKAQIWDTAG  67
            KVVL+GDSGVGK++LL RF  + F+   KSTIGV+F T+++  +    K IK  IWDTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  68   QERYRAITSAYYRGAVGALLVYDISKHQTYDNVNRWLKELRDHADSNIVIMLVGNKSD  125
            QER+R++   YYRGA  ALLVYD    +T+ N+  WL+EL+ +A  N  ++LVGNK D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDS---RTFSNLKYWLRELKKYAG-NSPVILVGNKID  114



Lambda      K        H        a         alpha
   0.315    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00000268

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  267     3e-93
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  151     2e-48


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 267 bits (685),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 87/161 (54%), Positives = 116/161 (72%), Gaps = 0/161 (0%)

Query  6    VVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQVDSKTIKAQIWDTAGQERY  65
            +VL+GD GVGKS+LL RFT+N+F  +   TIGV+F T++I+VD KT+K QIWDTAGQER+
Sbjct  2    LVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERF  61

Query  66   RAITSAYYRGAVGALLVYDISKHQTYDNVNRWLKELRDHADSNIVIMLVGNKSDLRHLRA  125
            RA+   YYRGA G LLVYDI+   +++NV +W++E+  HAD N+ I+LVGNK DL   R 
Sbjct  62   RALRPLYYRGADGFLLVYDITSRDSFENVKKWVEEILRHADENVPIVLVGNKCDLEDQRV  121

Query  126  VPTDEAKQFASENNLSFIETSALDASNVELAFQNILTEIYR  166
            V T+E +  A E  L F+ETSA    NVE AF+ +  EI +
Sbjct  122  VSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK  162


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 151 bits (385),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 61/117 (52%), Positives = 82/117 (70%), Gaps = 7/117 (6%)

Query  6    VVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQVDS---KTIKAQIWDTAGQ  62
            VVL+GDSGVGK++LL RF  + F+   KSTIGV+F T+++  +    K IK  IWDTAGQ
Sbjct  2    VVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAGQ  61

Query  63   ERYRAITSAYYRGAVGALLVYDISKHQTYDNVNRWLKELRDHADSNIVIMLVGNKSD  119
            ER+R++   YYRGA  ALLVYD    +T+ N+  WL+EL+ +A  N  ++LVGNK D
Sbjct  62   ERFRSLHPFYYRGAAAALLVYDS---RTFSNLKYWLRELKKYAG-NSPVILVGNKID  114



Lambda      K        H        a         alpha
   0.314    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00006503

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00006504

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00000269

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00000270

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00000271

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00000272

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462799 pfam09441, Abp2, ARS binding protein 2. This DNA-bindi...  225     4e-76


>CDD:462799 pfam09441, Abp2, ARS binding protein 2.  This DNA-binding protein 
binds to the autonomously replicating sequence (ARS) binding 
element. It may play a role in regulating the cell cycle 
response to stress signals.
Length=171

 Score = 225 bits (575),  Expect = 4e-76, Method: Composition-based stats.
 Identities = 78/101 (77%), Positives = 90/101 (89%), Gaps = 0/101 (0%)

Query  116  LPSRDIRDETIDDAYVSFILYCNPNVPMSTDTTELRKTFRSPPRSDGKSFSIFTLWELIR  175
            LPSRD+  ETI+DAYV+FILYCNP VP+ TDTTELR+ FR+PP+SDGKSFS FTL+ELIR
Sbjct  1    LPSRDVTAETIEDAYVAFILYCNPAVPLDTDTTELREAFRTPPKSDGKSFSTFTLFELIR  60

Query  176  KLDNKELKTWIQLAIELGVEPPSAEKKQSTQKVQQYAVRLK  216
            KL+ KE+KTW QLA++LGVEPP  EK QSTQKVQQYAVRLK
Sbjct  61   KLEQKEIKTWAQLALKLGVEPPDPEKGQSTQKVQQYAVRLK  101



Lambda      K        H        a         alpha
   0.312    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00000273

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00006506

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00006507

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00006505

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00000274

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00006508

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00006509

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00006510

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00006511

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00000275

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00006512

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.129    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00000276

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00000277

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.119    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00000278

Length=229


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00000279

Length=444


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00000280

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            108     2e-26


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 108 bits (271),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 77/399 (19%), Positives = 138/399 (35%), Gaps = 56/399 (14%)

Query  89   LILVAFHACMGTFAASGIIPGYSIRPMKVQLLMRHFNSIAEDFGVSINKASYLTSLQIAI  148
            L L AF A +G       +P                  +AED G+S  +   L +L    
Sbjct  1    LFLAAFLAALGRSLLGPALPLL----------------LAEDLGISPTEIGLLLTLFSLG  44

Query  149  LGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKSTNYASVAACRALQAFFISPASA  208
               A      LS R+GRR + L+ L+   +  +    +++   +   R LQ         
Sbjct  45   YALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFP  104

Query  209  IGSAIVMETTFKKDRAKYMGIWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMINGGQ  268
               A++ +    ++R + +G+ +    +G   GP + G +A   G+   + +LA+++   
Sbjct  105  AALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLA  164

Query  269  FILYLFFGPETRYIGGDENPKEPAWKREYLSLRRIDLTPFMWYEFVKPLTMVMQPCIAIP  328
             +L L   P          P E A     ++ + +   P +W                  
Sbjct  165  AVLLLLPRPPPE--SKRPKPAEEARLSLIVAWKALLRDPVLWL-----------------  205

Query  329  AAAYAMVFCLSNVLATVEVPTLLERRWGLNPEQLGLQFLGPIIGSVLGEQLGGRMSDLWM  388
                 ++F  +       +P   E   GL+    GL      +   +G  L GR+SD   
Sbjct  206  -LLALLLFGFAFFGLLTYLPLYQEVL-GLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLG  263

Query  389  RQRERKTRKRPEPEYRLWLSYIGYFLSIVGLIVFLVCTQLSGNRWEVAPIIGIAIGAAGN  448
            R+R            RL L+ +   L+ +GL++  +          +  +          
Sbjct  264  RRR------------RLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFG-----  306

Query  449  QVVTTVLITFAVDCYP-EEAGSVGVFITFVRQIWGFLGP  486
             +V   L     D  P EE G+          + G LGP
Sbjct  307  -LVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.141    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 666189040


Query= TCONS_00006515

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            109     5e-27


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 109 bits (275),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 76/385 (20%), Positives = 136/385 (35%), Gaps = 42/385 (11%)

Query  89   LILVAFHACMGTFAASGIIPGYSMYAPDFGVSINKASYLTSLQIAILGGAPLFWKPLSQR  148
            L L AF A +G       +P     A D G+S  +   L +L       A      LS R
Sbjct  1    LFLAAFLAALGRSLLGPALPLL--LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDR  58

Query  149  YGRRPIFLLSLMCSCVCNIGCAKSTNYASVAACRALQAFFISPASAIGSAIVMETTFKKD  208
            +GRR + L+ L+   +  +    +++   +   R LQ            A++ +    ++
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEE  118

Query  209  RAKYMGIWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMINGGQFILYLFFGPETRYI  268
            R + +G+ +    +G   GP + G +A   G+   + +LA+++    +L L   P     
Sbjct  119  RGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--  176

Query  269  GGDENPKEPAWKREYLSLRRIDLTPFMWYEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVL  328
                 P E A     ++ + +   P +W                       ++F  +   
Sbjct  177  SKRPKPAEEARLSLIVAWKALLRDPVLWL------------------LLALLLFGFAFFG  218

Query  329  ATVEVPTLLERRWGLNPEQLGLQFLGPIIGSVLGEQLGGRMSDLWMRQRERKTRKRPEPE  388
                +P   E   GL+    GL      +   +G  L GR+SD   R+R           
Sbjct  219  LLTYLPLYQEVL-GLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRR-----------  266

Query  389  YRLWLSYIGYFLSIVGLIVFLVCTQLSGNRWEVAPIIGIAIGAAGNQVVTTVLITFAVDC  448
             RL L+ +   L+ +GL++  +          +  +           +V   L     D 
Sbjct  267  -RLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFG------LVFPALNALVSDL  319

Query  449  YP-EEAGSVGVFITFVRQIWGFLGP  472
             P EE G+          + G LGP
Sbjct  320  APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00006514

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            106     6e-26


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 106 bits (267),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 77/403 (19%), Positives = 139/403 (34%), Gaps = 60/403 (15%)

Query  89   LILVAFHACMGTFAASGIIPGYSIIAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQR  148
            L L AF A +G       +P    +AED G+S  +   L +L       A      LS R
Sbjct  1    LFLAAFLAALGRSLLGPALPLL--LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDR  58

Query  149  YGRRPIFLLSLMCSCVCNIGCAKSTNYASVAACRALQAFFISPASGKSCVDADEEGSRLT  208
            +GRR + L+ L+   +  +    +++   +   R LQ                       
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAG------------------  100

Query  209  TVTAIGSAIVMETTFKKDRAKYMGIWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMI  268
             +     A++ +    ++R + +G+ +    +G   GP + G +A   G+   + +LA++
Sbjct  101  ALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAIL  160

Query  269  NGGQFILYLFFGPETRYIGGDENPKEPAWKREYLSLRRIDLTPFMWYEFVKPLTMVMQPC  328
            +    +L L   P          P E A     ++ + +   P +W              
Sbjct  161  SLLAAVLLLLPRPPPE--SKRPKPAEEARLSLIVAWKALLRDPVLWL-------------  205

Query  329  IAIPAAAYAMVFCLSNVLATVEVPTLLERRWGLNPEQLGLQFLGPIIGSVLGEQLGGRMS  388
                     ++F  +       +P   E   GL+    GL      +   +G  L GR+S
Sbjct  206  -----LLALLLFGFAFFGLLTYLPLYQEVL-GLSALLAGLLLGLGGLLGAIGRLLLGRLS  259

Query  389  DLWMRQRERKTRKRPEPEYRLWLSYIGYFLSIVGLIVFLVCTQLSGNRWEVAPIIGIAIG  448
            D   R+R            RL L+ +   L+ +GL++  +          +  +      
Sbjct  260  DRLGRRR------------RLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFG-  306

Query  449  AAGNQVVTTVLITFAVDCYP-EEAGSVGVFITFVRQIWGFLGP  490
                 +V   L     D  P EE G+          + G LGP
Sbjct  307  -----LVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.140    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00006513

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            80.2    3e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 80.2 bits (198),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 31/157 (20%), Positives = 63/157 (40%), Gaps = 18/157 (11%)

Query  13   IAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKS  72
            +AED G+S  +   L +L       A      LS R+GRR + L+ L+   +  +    +
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  73   TNYASVAACRALQAFFISPASGKSCVDADEEGSRLTTVTAIGSAIVMETTFKKDRAKYMG  132
            ++   +   R LQ                        +     A++ +    ++R + +G
Sbjct  83   SSLWLLLVLRVLQGLGAG------------------ALFPAALALIADWFPPEERGRALG  124

Query  133  IWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMVS  169
            + +    +G   GP + G +A   G+   + +LA++S
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILS  161



Lambda      K        H        a         alpha
   0.323    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00000281

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            80.2    3e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 80.2 bits (198),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 31/157 (20%), Positives = 63/157 (40%), Gaps = 18/157 (11%)

Query  13   IAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKS  72
            +AED G+S  +   L +L       A      LS R+GRR + L+ L+   +  +    +
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  73   TNYASVAACRALQAFFISPASGKSCVDADEEGSRLTTVTAIGSAIVMETTFKKDRAKYMG  132
            ++   +   R LQ                        +     A++ +    ++R + +G
Sbjct  83   SSLWLLLVLRVLQGLGAG------------------ALFPAALALIADWFPPEERGRALG  124

Query  133  IWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMVS  169
            + +    +G   GP + G +A   G+   + +LA++S
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILS  161



Lambda      K        H        a         alpha
   0.323    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00006517

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            97.9    7e-24


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 97.9 bits (244),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 71/163 (44%), Gaps = 2/163 (1%)

Query  89   LILVAFHACMGTFAASGIIPGYSIIAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQR  148
            L L AF A +G       +P    +AED G+S  +   L +L       A      LS R
Sbjct  1    LFLAAFLAALGRSLLGPALPLL--LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDR  58

Query  149  YGRRPIFLLSLMCSCVCNIGCAKSTNYASVAACRALQAFFISPASAIGSAIVMETTFKKD  208
            +GRR + L+ L+   +  +    +++   +   R LQ            A++ +    ++
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEE  118

Query  209  RAKYMGIWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMVS  251
            R + +G+ +    +G   GP + G +A   G+   + +LA++S
Sbjct  119  RGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILS  161



Lambda      K        H        a         alpha
   0.323    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00006516

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            112     5e-28


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 112 bits (283),  Expect = 5e-28, Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 138/385 (36%), Gaps = 42/385 (11%)

Query  89   LILVAFHACMGTFAASGIIPGYSMIAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQR  148
            L L AF A +G       +P    +AED G+S  +   L +L       A      LS R
Sbjct  1    LFLAAFLAALGRSLLGPALPLL--LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDR  58

Query  149  YGRRPIFLLSLMCSCVCNIGCAKSTNYASVAACRALQAFFISPASAIGSAIVMETTFKKD  208
            +GRR + L+ L+   +  +    +++   +   R LQ            A++ +    ++
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEE  118

Query  209  RAKYMGIWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMINGGQFILYLFFGPETRYI  268
            R + +G+ +    +G   GP + G +A   G+   + +LA+++    +L L   P     
Sbjct  119  RGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--  176

Query  269  GGDENPKEPAWKREYLSLRRIDLTPFMWYEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVL  328
                 P E A     ++ + +   P +W                       ++F  +   
Sbjct  177  SKRPKPAEEARLSLIVAWKALLRDPVLWL------------------LLALLLFGFAFFG  218

Query  329  ATVEVPTLLERRWGLNPEQLGLQFLGPIIGSVLGEQLGGRMSDLWMRQRERKTRKRPEPE  388
                +P   E   GL+    GL      +   +G  L GR+SD   R+R           
Sbjct  219  LLTYLPLYQEVL-GLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRR-----------  266

Query  389  YRLWLSYIGYFLSIVGLIVFLVCTQLSGNRWEVAPIIGIAIGAAGNQVVTTVLITFAVDC  448
             RL L+ +   L+ +GL++  +          +  +           +V   L     D 
Sbjct  267  -RLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFG------LVFPALNALVSDL  319

Query  449  YP-EEAGSVGVFITFVRQIWGFLGP  472
             P EE G+          + G LGP
Sbjct  320  APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00006518

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            94.4    6e-22


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 94.4 bits (235),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 130/379 (34%), Gaps = 58/379 (15%)

Query  13   IAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKS  72
            +AED G+S  +   L +L       A      LS R+GRR + L+ L+   +  +    +
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  73   TNYASVAACRALQAFFISPASGKSCVDADEEGSRLTTVTAIGSAIVMETTFKKDRAKYMG  132
            ++   +   R LQ                        +     A++ +    ++R + +G
Sbjct  83   SSLWLLLVLRVLQGLGAG------------------ALFPAALALIADWFPPEERGRALG  124

Query  133  IWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMINGGQFILYLFFGPETRYIGGDENP  192
            + +    +G   GP + G +A   G+   + +LA+++    +L L   P          P
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--SKRPKP  182

Query  193  KEPAWKREYLSLRRIDLTPFMWYEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVLATVEVP  252
             E A     ++ + +   P +W                       ++F  +       +P
Sbjct  183  AEEARLSLIVAWKALLRDPVLWL------------------LLALLLFGFAFFGLLTYLP  224

Query  253  TLLERRWGLNPEQLGLQFLGPIIGSVLGEQLGGRMSDLWMRQRERKTRKRPEPEYRLWLS  312
               E   GL+    GL      +   +G  L GR+SD   R+R            RL L+
Sbjct  225  LYQEVL-GLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRR------------RLLLA  271

Query  313  YIGYFLSIVGLIVFLVCTQLSGNRWEVAPIIGIAIGAAGNQVVTTVLITFAVDCYP-EEA  371
             +   L+ +GL++  +          +  +           +V   L     D  P EE 
Sbjct  272  LLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFG------LVFPALNALVSDLAPKEER  325

Query  372  GSVGVFITFVRQIWGFLGP  390
            G+          + G LGP
Sbjct  326  GTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.141    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 529127880


Query= TCONS_00000283

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            97.9    7e-24


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 97.9 bits (244),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 71/163 (44%), Gaps = 2/163 (1%)

Query  89   LILVAFHACMGTFAASGIIPGYSIIAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQR  148
            L L AF A +G       +P    +AED G+S  +   L +L       A      LS R
Sbjct  1    LFLAAFLAALGRSLLGPALPLL--LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDR  58

Query  149  YGRRPIFLLSLMCSCVCNIGCAKSTNYASVAACRALQAFFISPASAIGSAIVMETTFKKD  208
            +GRR + L+ L+   +  +    +++   +   R LQ            A++ +    ++
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEE  118

Query  209  RAKYMGIWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMVS  251
            R + +G+ +    +G   GP + G +A   G+   + +LA++S
Sbjct  119  RGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILS  161



Lambda      K        H        a         alpha
   0.323    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00000282

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            94.4    6e-22


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 94.4 bits (235),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 130/379 (34%), Gaps = 58/379 (15%)

Query  13   IAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKS  72
            +AED G+S  +   L +L       A      LS R+GRR + L+ L+   +  +    +
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  73   TNYASVAACRALQAFFISPASGKSCVDADEEGSRLTTVTAIGSAIVMETTFKKDRAKYMG  132
            ++   +   R LQ                        +     A++ +    ++R + +G
Sbjct  83   SSLWLLLVLRVLQGLGAG------------------ALFPAALALIADWFPPEERGRALG  124

Query  133  IWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMINGGQFILYLFFGPETRYIGGDENP  192
            + +    +G   GP + G +A   G+   + +LA+++    +L L   P          P
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--SKRPKP  182

Query  193  KEPAWKREYLSLRRIDLTPFMWYEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVLATVEVP  252
             E A     ++ + +   P +W                       ++F  +       +P
Sbjct  183  AEEARLSLIVAWKALLRDPVLWL------------------LLALLLFGFAFFGLLTYLP  224

Query  253  TLLERRWGLNPEQLGLQFLGPIIGSVLGEQLGGRMSDLWMRQRERKTRKRPEPEYRLWLS  312
               E   GL+    GL      +   +G  L GR+SD   R+R            RL L+
Sbjct  225  LYQEVL-GLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRR------------RLLLA  271

Query  313  YIGYFLSIVGLIVFLVCTQLSGNRWEVAPIIGIAIGAAGNQVVTTVLITFAVDCYP-EEA  371
             +   L+ +GL++  +          +  +           +V   L     D  P EE 
Sbjct  272  LLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFG------LVFPALNALVSDLAPKEER  325

Query  372  GSVGVFITFVRQIWGFLGP  390
            G+          + G LGP
Sbjct  326  GTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.141    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 529127880


Query= TCONS_00006519

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            114     1e-28


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 114 bits (286),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 138/385 (36%), Gaps = 42/385 (11%)

Query  89   LILVAFHACMGTFAASGIIPGYSIIAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQR  148
            L L AF A +G       +P    +AED G+S  +   L +L       A      LS R
Sbjct  1    LFLAAFLAALGRSLLGPALPLL--LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDR  58

Query  149  YGRRPIFLLSLMCSCVCNIGCAKSTNYASVAACRALQAFFISPASAIGSAIVMETTFKKD  208
            +GRR + L+ L+   +  +    +++   +   R LQ            A++ +    ++
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEE  118

Query  209  RAKYMGIWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMINGGQFILYLFFGPETRYI  268
            R + +G+ +    +G   GP + G +A   G+   + +LA+++    +L L   P     
Sbjct  119  RGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--  176

Query  269  GGDENPKEPAWKREYLSLRRIDLTPFMWYEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVL  328
                 P E A     ++ + +   P +W                       ++F  +   
Sbjct  177  SKRPKPAEEARLSLIVAWKALLRDPVLWL------------------LLALLLFGFAFFG  218

Query  329  ATVEVPTLLERRWGLNPEQLGLQFLGPIIGSVLGEQLGGRMSDLWMRQRERKTRKRPEPE  388
                +P   E   GL+    GL      +   +G  L GR+SD   R+R           
Sbjct  219  LLTYLPLYQEVL-GLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRR-----------  266

Query  389  YRLWLSYIGYFLSIVGLIVFLVCTQLSGNRWEVAPIIGIAIGAAGNQVVTTVLITFAVDC  448
             RL L+ +   L+ +GL++  +          +  +           +V   L     D 
Sbjct  267  -RLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFG------LVFPALNALVSDL  319

Query  449  YP-EEAGSVGVFITFVRQIWGFLGP  472
             P EE G+          + G LGP
Sbjct  320  APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00006521

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            101     1e-24


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 101 bits (254),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 67/360 (19%), Positives = 127/360 (35%), Gaps = 38/360 (11%)

Query  13   IAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKS  72
            +AED G+S  +   L +L       A      LS R+GRR + L+ L+   +  +    +
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  73   TNYASVAACRALQAFFISPASAIGSAIVMETTFKKDRAKYMGIWTLMVTVGIPCGPFIFG  132
            ++   +   R LQ            A++ +    ++R + +G+ +    +G   GP + G
Sbjct  83   SSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGG  142

Query  133  FVAHRAGYVWIYWVLAMINGGQFILYLFFGPETRYIGGDENPKEPAWKREYLSLRRIDLT  192
             +A   G+   + +LA+++    +L L   P          P E A     ++ + +   
Sbjct  143  LLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--SKRPKPAEEARLSLIVAWKALLRD  200

Query  193  PFMWYEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVLATVEVPTLLERRWGLNPEQLGLQF  252
            P +W                       ++F  +       +P   E   GL+    GL  
Sbjct  201  PVLWL------------------LLALLLFGFAFFGLLTYLPLYQEVL-GLSALLAGLLL  241

Query  253  LGPIIGSVLGEQLGGRMSDLWMRQRERKTRKRPEPEYRLWLSYIGYFLSIVGLIVFLVCT  312
                +   +G  L GR+SD   R+R            RL L+ +   L+ +GL++  +  
Sbjct  242  GLGGLLGAIGRLLLGRLSDRLGRRR------------RLLLALLLLILAALGLLLLSLTL  289

Query  313  QLSGNRWEVAPIIGIAIGAAGNQVVTTVLITFAVDCYPEEAGSVGVFITFVRQIWGFLGP  372
                    +  +           V   +    +     EE G+          + G LGP
Sbjct  290  SSLWLLLALLLLGFGFGL-----VFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00006520

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            94.4    6e-22


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 94.4 bits (235),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 130/379 (34%), Gaps = 58/379 (15%)

Query  13   IAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKS  72
            +AED G+S  +   L +L       A      LS R+GRR + L+ L+   +  +    +
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  73   TNYASVAACRALQAFFISPASGKSCVDADEEGSRLTTVTAIGSAIVMETTFKKDRAKYMG  132
            ++   +   R LQ                        +     A++ +    ++R + +G
Sbjct  83   SSLWLLLVLRVLQGLGAG------------------ALFPAALALIADWFPPEERGRALG  124

Query  133  IWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMINGGQFILYLFFGPETRYIGGDENP  192
            + +    +G   GP + G +A   G+   + +LA+++    +L L   P          P
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--SKRPKP  182

Query  193  KEPAWKREYLSLRRIDLTPFMWYEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVLATVEVP  252
             E A     ++ + +   P +W                       ++F  +       +P
Sbjct  183  AEEARLSLIVAWKALLRDPVLWL------------------LLALLLFGFAFFGLLTYLP  224

Query  253  TLLERRWGLNPEQLGLQFLGPIIGSVLGEQLGGRMSDLWMRQRERKTRKRPEPEYRLWLS  312
               E   GL+    GL      +   +G  L GR+SD   R+R            RL L+
Sbjct  225  LYQEVL-GLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRR------------RLLLA  271

Query  313  YIGYFLSIVGLIVFLVCTQLSGNRWEVAPIIGIAIGAAGNQVVTTVLITFAVDCYP-EEA  371
             +   L+ +GL++  +          +  +           +V   L     D  P EE 
Sbjct  272  LLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFG------LVFPALNALVSDLAPKEER  325

Query  372  GSVGVFITFVRQIWGFLGP  390
            G+          + G LGP
Sbjct  326  GTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.141    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 529127880


Query= TCONS_00006522

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            80.2    3e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 80.2 bits (198),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 31/157 (20%), Positives = 63/157 (40%), Gaps = 18/157 (11%)

Query  13   IAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKS  72
            +AED G+S  +   L +L       A      LS R+GRR + L+ L+   +  +    +
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  73   TNYASVAACRALQAFFISPASGKSCVDADEEGSRLTTVTAIGSAIVMETTFKKDRAKYMG  132
            ++   +   R LQ                        +     A++ +    ++R + +G
Sbjct  83   SSLWLLLVLRVLQGLGAG------------------ALFPAALALIADWFPPEERGRALG  124

Query  133  IWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMVS  169
            + +    +G   GP + G +A   G+   + +LA++S
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILS  161



Lambda      K        H        a         alpha
   0.323    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00000287

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            105     3e-25


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 105 bits (263),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 77/403 (19%), Positives = 139/403 (34%), Gaps = 60/403 (15%)

Query  89   LILVAFHACMGTFAASGIIPGYSIIAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQR  148
            L L AF A +G       +P    +AED G+S  +   L +L       A      LS R
Sbjct  1    LFLAAFLAALGRSLLGPALPLL--LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDR  58

Query  149  YGRRPIFLLSLMCSCVCNIGCAKSTNYASVAACRALQAFFISPASGKSCVDADEEGSRLT  208
            +GRR + L+ L+   +  +    +++   +   R LQ                       
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAG------------------  100

Query  209  TVTAIGSAIVMETTFKKDRAKYMGIWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMI  268
             +     A++ +    ++R + +G+ +    +G   GP + G +A   G+   + +LA++
Sbjct  101  ALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAIL  160

Query  269  NGGQFILYLFFGPETRYIGGDENPKEPAWKREYLSLRRIDLTPFMWYEFVKPLTMVMQPC  328
            +    +L L   P          P E A     ++ + +   P +W              
Sbjct  161  SLLAAVLLLLPRPPPE--SKRPKPAEEARLSLIVAWKALLRDPVLWL-------------  205

Query  329  IAIPAAAYAMVFCLSNVLATVEVPTLLERRWGLNPEQLGLQFLGPIIGSVLGEQLGGRMS  388
                     ++F  +       +P   E   GL+    GL      +   +G  L GR+S
Sbjct  206  -----LLALLLFGFAFFGLLTYLPLYQEVL-GLSALLAGLLLGLGGLLGAIGRLLLGRLS  259

Query  389  DLWMRQRERKTRKRPEPEYRLWLSYIGYFLSIVGLIVFLVCTQLSGNRWEVAPIIGIAIG  448
            D   R+R            RL L+ +   L+ +GL++  +          +  +      
Sbjct  260  DRLGRRR------------RLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFG-  306

Query  449  AAGNQVVTTVLITFAVDCYP-EEAGSVGVFITFVRQIWGFLGP  490
                 +V   L     D  P EE G+          + G LGP
Sbjct  307  -----LVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.140    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0637    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00000286

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            112     3e-28


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 112 bits (283),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 137/385 (36%), Gaps = 42/385 (11%)

Query  89   LILVAFHACMGTFAASGIIPGYSMFAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQR  148
            L L AF A +G       +P     AED G+S  +   L +L       A      LS R
Sbjct  1    LFLAAFLAALGRSLLGPALPLL--LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDR  58

Query  149  YGRRPIFLLSLMCSCVCNIGCAKSTNYASVAACRALQAFFISPASAIGSAIVMETTFKKD  208
            +GRR + L+ L+   +  +    +++   +   R LQ            A++ +    ++
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEE  118

Query  209  RAKYMGIWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMINGGQFILYLFFGPETRYI  268
            R + +G+ +    +G   GP + G +A   G+   + +LA+++    +L L   P     
Sbjct  119  RGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--  176

Query  269  GGDENPKEPAWKREYLSLRRIDLTPFMWYEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVL  328
                 P E A     ++ + +   P +W                       ++F  +   
Sbjct  177  SKRPKPAEEARLSLIVAWKALLRDPVLWL------------------LLALLLFGFAFFG  218

Query  329  ATVEVPTLLERRWGLNPEQLGLQFLGPIIGSVLGEQLGGRMSDLWMRQRERKTRKRPEPE  388
                +P   E   GL+    GL      +   +G  L GR+SD   R+R           
Sbjct  219  LLTYLPLYQEVL-GLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRR-----------  266

Query  389  YRLWLSYIGYFLSIVGLIVFLVCTQLSGNRWEVAPIIGIAIGAAGNQVVTTVLITFAVDC  448
             RL L+ +   L+ +GL++  +          +  +           +V   L     D 
Sbjct  267  -RLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFG------LVFPALNALVSDL  319

Query  449  YP-EEAGSVGVFITFVRQIWGFLGP  472
             P EE G+          + G LGP
Sbjct  320  APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00000285

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            114     1e-28


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 114 bits (286),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 138/385 (36%), Gaps = 42/385 (11%)

Query  89   LILVAFHACMGTFAASGIIPGYSIIAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQR  148
            L L AF A +G       +P    +AED G+S  +   L +L       A      LS R
Sbjct  1    LFLAAFLAALGRSLLGPALPLL--LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDR  58

Query  149  YGRRPIFLLSLMCSCVCNIGCAKSTNYASVAACRALQAFFISPASAIGSAIVMETTFKKD  208
            +GRR + L+ L+   +  +    +++   +   R LQ            A++ +    ++
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEE  118

Query  209  RAKYMGIWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMINGGQFILYLFFGPETRYI  268
            R + +G+ +    +G   GP + G +A   G+   + +LA+++    +L L   P     
Sbjct  119  RGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--  176

Query  269  GGDENPKEPAWKREYLSLRRIDLTPFMWYEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVL  328
                 P E A     ++ + +   P +W                       ++F  +   
Sbjct  177  SKRPKPAEEARLSLIVAWKALLRDPVLWL------------------LLALLLFGFAFFG  218

Query  329  ATVEVPTLLERRWGLNPEQLGLQFLGPIIGSVLGEQLGGRMSDLWMRQRERKTRKRPEPE  388
                +P   E   GL+    GL      +   +G  L GR+SD   R+R           
Sbjct  219  LLTYLPLYQEVL-GLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRR-----------  266

Query  389  YRLWLSYIGYFLSIVGLIVFLVCTQLSGNRWEVAPIIGIAIGAAGNQVVTTVLITFAVDC  448
             RL L+ +   L+ +GL++  +          +  +           +V   L     D 
Sbjct  267  -RLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFG------LVFPALNALVSDL  319

Query  449  YP-EEAGSVGVFITFVRQIWGFLGP  472
             P EE G+          + G LGP
Sbjct  320  APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00006523

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            112     5e-28


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 112 bits (283),  Expect = 5e-28, Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 138/385 (36%), Gaps = 42/385 (11%)

Query  89   LILVAFHACMGTFAASGIIPGYSIIAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQR  148
            L L AF A +G       +P    +AED G+S  +   L +L       A      LS R
Sbjct  1    LFLAAFLAALGRSLLGPALPLL--LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDR  58

Query  149  YGRRPIFLLSLMCSCVCNIGCAKSTNYASVAACRALQAFFISPASAIGSAIVMETTFKKD  208
            +GRR + L+ L+   +  +    +++   +   R LQ            A++ +    ++
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEE  118

Query  209  RAKYMGIWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMINGGQFILYLFFGPETRYI  268
            R + +G+ +    +G   GP + G +A   G+   + +LA+++    +L L   P     
Sbjct  119  RGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--  176

Query  269  GGDENPKEPAWKREYLSLRRIDLTPFMWYEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVL  328
                 P E A     ++ + +   P +W                       ++F  +   
Sbjct  177  SKRPKPAEEARLSLIVAWKALLRDPVLWL------------------LLALLLFGFAFFG  218

Query  329  ATVEVPTLLERRWGLNPEQLGLQFLGPIIGSVLGEQLGGRMSDLWMRQRERKTRKRPEPE  388
                +P   E   GL+    GL      +   +G  L GR+SD   R+R           
Sbjct  219  LLTYLPLYQEVL-GLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRR-----------  266

Query  389  YRLWLSYIGYFLSIVGLIVFLVCTQLSGNRWEVAPIIGIAIGAAGNQVVTTVLITFAVDC  448
             RL L+ +   L+ +GL++  +          +  +           +V   L     D 
Sbjct  267  -RLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFG------LVFPALNALVSDL  319

Query  449  YP-EEAGSVGVFITFVRQIWGFLGP  472
             P EE G+          + G LGP
Sbjct  320  APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00000284

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            102     3e-24


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 102 bits (255),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 77/417 (18%), Positives = 139/417 (33%), Gaps = 74/417 (18%)

Query  89   LILVAFHACMGTFAASGIIPGYSIRPMKVQLLMRHFNSIAEDFGVSINKASYLTSLQIAI  148
            L L AF A +G       +P                  +AED G+S  +   L +L    
Sbjct  1    LFLAAFLAALGRSLLGPALPLL----------------LAEDLGISPTEIGLLLTLFSLG  44

Query  149  LGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKSTNYASVAACRALQAFFISPASG  208
               A      LS R+GRR + L+ L+   +  +    +++   +   R LQ         
Sbjct  45   YALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAG----  100

Query  209  KSCVDADEEGSRLTTVTAIGSAIVMETTFKKDRAKYMGIWTLMVTVGIPCGPFIFGFVAH  268
                           +     A++ +    ++R + +G+ +    +G   GP + G +A 
Sbjct  101  --------------ALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLAS  146

Query  269  RAGYVWIYWVLAMINGGQFILYLFFGPETRYIGGDENPKEPAWKREYLSLRRIDLTPFMW  328
              G+   + +LA+++    +L L   P          P E A     ++ + +   P +W
Sbjct  147  LFGWRAAFLILAILSLLAAVLLLLPRPPPE--SKRPKPAEEARLSLIVAWKALLRDPVLW  204

Query  329  YEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVLATVEVPTLLERRWGLNPEQLGLQFLGPI  388
                                   ++F  +       +P   E   GL+    GL      
Sbjct  205  L------------------LLALLLFGFAFFGLLTYLPLYQEVL-GLSALLAGLLLGLGG  245

Query  389  IGSVLGEQLGGRMSDLWMRQRERKTRKRPEPEYRLWLSYIGYFLSIVGLIVFLVCTQLSG  448
            +   +G  L GR+SD   R+R            RL L+ +   L+ +GL++  +      
Sbjct  246  LLGAIGRLLLGRLSDRLGRRR------------RLLLALLLLILAALGLLLLSLTLSSLW  293

Query  449  NRWEVAPIIGIAIGAAGNQVVTTVLITFAVDCYP-EEAGSVGVFITFVRQIWGFLGP  504
                +  +           +V   L     D  P EE G+          + G LGP
Sbjct  294  LLLALLLLGFGFG------LVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00006524

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            80.2    3e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 80.2 bits (198),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 31/157 (20%), Positives = 63/157 (40%), Gaps = 18/157 (11%)

Query  13   IAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKS  72
            +AED G+S  +   L +L       A      LS R+GRR + L+ L+   +  +    +
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  73   TNYASVAACRALQAFFISPASGKSCVDADEEGSRLTTVTAIGSAIVMETTFKKDRAKYMG  132
            ++   +   R LQ                        +     A++ +    ++R + +G
Sbjct  83   SSLWLLLVLRVLQGLGAG------------------ALFPAALALIADWFPPEERGRALG  124

Query  133  IWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMVS  169
            + +    +G   GP + G +A   G+   + +LA++S
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILS  161



Lambda      K        H        a         alpha
   0.323    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00000289

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            101     1e-24


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 101 bits (254),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 67/360 (19%), Positives = 127/360 (35%), Gaps = 38/360 (11%)

Query  13   IAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKS  72
            +AED G+S  +   L +L       A      LS R+GRR + L+ L+   +  +    +
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  73   TNYASVAACRALQAFFISPASAIGSAIVMETTFKKDRAKYMGIWTLMVTVGIPCGPFIFG  132
            ++   +   R LQ            A++ +    ++R + +G+ +    +G   GP + G
Sbjct  83   SSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGG  142

Query  133  FVAHRAGYVWIYWVLAMINGGQFILYLFFGPETRYIGGDENPKEPAWKREYLSLRRIDLT  192
             +A   G+   + +LA+++    +L L   P          P E A     ++ + +   
Sbjct  143  LLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--SKRPKPAEEARLSLIVAWKALLRD  200

Query  193  PFMWYEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVLATVEVPTLLERRWGLNPEQLGLQF  252
            P +W                       ++F  +       +P   E   GL+    GL  
Sbjct  201  PVLWL------------------LLALLLFGFAFFGLLTYLPLYQEVL-GLSALLAGLLL  241

Query  253  LGPIIGSVLGEQLGGRMSDLWMRQRERKTRKRPEPEYRLWLSYIGYFLSIVGLIVFLVCT  312
                +   +G  L GR+SD   R+R            RL L+ +   L+ +GL++  +  
Sbjct  242  GLGGLLGAIGRLLLGRLSDRLGRRR------------RLLLALLLLILAALGLLLLSLTL  289

Query  313  QLSGNRWEVAPIIGIAIGAAGNQVVTTVLITFAVDCYPEEAGSVGVFITFVRQIWGFLGP  372
                    +  +           V   +    +     EE G+          + G LGP
Sbjct  290  SSLWLLLALLLLGFGFGL-----VFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00000288

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            102     4e-25


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 102 bits (257),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 67/360 (19%), Positives = 127/360 (35%), Gaps = 38/360 (11%)

Query  13   IAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKS  72
            +AED G+S  +   L +L       A      LS R+GRR + L+ L+   +  +    +
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  73   TNYASVAACRALQAFFISPASAIGSAIVMETTFKKDRAKYMGIWTLMVTVGIPCGPFIFG  132
            ++   +   R LQ            A++ +    ++R + +G+ +    +G   GP + G
Sbjct  83   SSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGG  142

Query  133  FVAHRAGYVWIYWVLAMINGGQFILYLFFGPETRYIGGDENPKEPAWKREYLSLRRIDLT  192
             +A   G+   + +LA+++    +L L   P          P E A     ++ + +   
Sbjct  143  LLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--SKRPKPAEEARLSLIVAWKALLRD  200

Query  193  PFMWYEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVLATVEVPTLLERRWGLNPEQLGLQF  252
            P +W                       ++F  +       +P   E   GL+    GL  
Sbjct  201  PVLWL------------------LLALLLFGFAFFGLLTYLPLYQEVL-GLSALLAGLLL  241

Query  253  LGPIIGSVLGEQLGGRMSDLWMRQRERKTRKRPEPEYRLWLSYIGYFLSIVGLIVFLVCT  312
                +   +G  L GR+SD   R+R            RL L+ +   L+ +GL++  +  
Sbjct  242  GLGGLLGAIGRLLLGRLSDRLGRRR------------RLLLALLLLILAALGLLLLSLTL  289

Query  313  QLSGNRWEVAPIIGIAIGAAGNQVVTTVLITFAVDCYPEEAGSVGVFITFVRQIWGFLGP  372
                    +  +           V   +    +     EE G+          + G LGP
Sbjct  290  SSLWLLLALLLLGFGFGL-----VFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.143    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00000290

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            102     4e-25


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 102 bits (257),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 67/360 (19%), Positives = 127/360 (35%), Gaps = 38/360 (11%)

Query  13   IAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKS  72
            +AED G+S  +   L +L       A      LS R+GRR + L+ L+   +  +    +
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  73   TNYASVAACRALQAFFISPASAIGSAIVMETTFKKDRAKYMGIWTLMVTVGIPCGPFIFG  132
            ++   +   R LQ            A++ +    ++R + +G+ +    +G   GP + G
Sbjct  83   SSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGG  142

Query  133  FVAHRAGYVWIYWVLAMINGGQFILYLFFGPETRYIGGDENPKEPAWKREYLSLRRIDLT  192
             +A   G+   + +LA+++    +L L   P          P E A     ++ + +   
Sbjct  143  LLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--SKRPKPAEEARLSLIVAWKALLRD  200

Query  193  PFMWYEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVLATVEVPTLLERRWGLNPEQLGLQF  252
            P +W                       ++F  +       +P   E   GL+    GL  
Sbjct  201  PVLWL------------------LLALLLFGFAFFGLLTYLPLYQEVL-GLSALLAGLLL  241

Query  253  LGPIIGSVLGEQLGGRMSDLWMRQRERKTRKRPEPEYRLWLSYIGYFLSIVGLIVFLVCT  312
                +   +G  L GR+SD   R+R            RL L+ +   L+ +GL++  +  
Sbjct  242  GLGGLLGAIGRLLLGRLSDRLGRRR------------RLLLALLLLILAALGLLLLSLTL  289

Query  313  QLSGNRWEVAPIIGIAIGAAGNQVVTTVLITFAVDCYPEEAGSVGVFITFVRQIWGFLGP  372
                    +  +           V   +    +     EE G+          + G LGP
Sbjct  290  SSLWLLLALLLLGFGFGL-----VFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.143    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00000291

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            95.9    1e-22


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 95.9 bits (239),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 130/379 (34%), Gaps = 58/379 (15%)

Query  13   IAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKS  72
            +AED G+S  +   L +L       A      LS R+GRR + L+ L+   +  +    +
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  73   TNYASVAACRALQAFFISPASGKSCVDADEEGSRLTTVTAIGSAIVMETTFKKDRAKYMG  132
            ++   +   R LQ                        +     A++ +    ++R + +G
Sbjct  83   SSLWLLLVLRVLQGLGAG------------------ALFPAALALIADWFPPEERGRALG  124

Query  133  IWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMINGGQFILYLFFGPETRYIGGDENP  192
            + +    +G   GP + G +A   G+   + +LA+++    +L L   P          P
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--SKRPKP  182

Query  193  KEPAWKREYLSLRRIDLTPFMWYEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVLATVEVP  252
             E A     ++ + +   P +W                       ++F  +       +P
Sbjct  183  AEEARLSLIVAWKALLRDPVLWL------------------LLALLLFGFAFFGLLTYLP  224

Query  253  TLLERRWGLNPEQLGLQFLGPIIGSVLGEQLGGRMSDLWMRQRERKTRKRPEPEYRLWLS  312
               E   GL+    GL      +   +G  L GR+SD   R+R            RL L+
Sbjct  225  LYQEVL-GLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRR------------RLLLA  271

Query  313  YIGYFLSIVGLIVFLVCTQLSGNRWEVAPIIGIAIGAAGNQVVTTVLITFAVDCYP-EEA  371
             +   L+ +GL++  +          +  +           +V   L     D  P EE 
Sbjct  272  LLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFG------LVFPALNALVSDLAPKEER  325

Query  372  GSVGVFITFVRQIWGFLGP  390
            G+          + G LGP
Sbjct  326  GTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.142    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00006526

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            100     1e-23


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 100 bits (251),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 77/417 (18%), Positives = 139/417 (33%), Gaps = 74/417 (18%)

Query  89   LILVAFHACMGTFAASGIIPGYSIRPMKVQLLMRHFNSIAEDFGVSINKASYLTSLQIAI  148
            L L AF A +G       +P                  +AED G+S  +   L +L    
Sbjct  1    LFLAAFLAALGRSLLGPALPLL----------------LAEDLGISPTEIGLLLTLFSLG  44

Query  149  LGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKSTNYASVAACRALQAFFISPASG  208
               A      LS R+GRR + L+ L+   +  +    +++   +   R LQ         
Sbjct  45   YALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAG----  100

Query  209  KSCVDADEEGSRLTTVTAIGSAIVMETTFKKDRAKYMGIWTLMVTVGIPCGPFIFGFVAH  268
                           +     A++ +    ++R + +G+ +    +G   GP + G +A 
Sbjct  101  --------------ALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLAS  146

Query  269  RAGYVWIYWVLAMINGGQFILYLFFGPETRYIGGDENPKEPAWKREYLSLRRIDLTPFMW  328
              G+   + +LA+++    +L L   P          P E A     ++ + +   P +W
Sbjct  147  LFGWRAAFLILAILSLLAAVLLLLPRPPPE--SKRPKPAEEARLSLIVAWKALLRDPVLW  204

Query  329  YEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVLATVEVPTLLERRWGLNPEQLGLQFLGPI  388
                                   ++F  +       +P   E   GL+    GL      
Sbjct  205  L------------------LLALLLFGFAFFGLLTYLPLYQEVL-GLSALLAGLLLGLGG  245

Query  389  IGSVLGEQLGGRMSDLWMRQRERKTRKRPEPEYRLWLSYIGYFLSIVGLIVFLVCTQLSG  448
            +   +G  L GR+SD   R+R            RL L+ +   L+ +GL++  +      
Sbjct  246  LLGAIGRLLLGRLSDRLGRRR------------RLLLALLLLILAALGLLLLSLTLSSLW  293

Query  449  NRWEVAPIIGIAIGAAGNQVVTTVLITFAVDCYP-EEAGSVGVFITFVRQIWGFLGP  504
                +  +           +V   L     D  P EE G+          + G LGP
Sbjct  294  LLLALLLLGFGFG------LVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00006525

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            102     4e-25


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 102 bits (257),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 67/360 (19%), Positives = 127/360 (35%), Gaps = 38/360 (11%)

Query  13   IAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKS  72
            +AED G+S  +   L +L       A      LS R+GRR + L+ L+   +  +    +
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  73   TNYASVAACRALQAFFISPASAIGSAIVMETTFKKDRAKYMGIWTLMVTVGIPCGPFIFG  132
            ++   +   R LQ            A++ +    ++R + +G+ +    +G   GP + G
Sbjct  83   SSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGG  142

Query  133  FVAHRAGYVWIYWVLAMINGGQFILYLFFGPETRYIGGDENPKEPAWKREYLSLRRIDLT  192
             +A   G+   + +LA+++    +L L   P          P E A     ++ + +   
Sbjct  143  LLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--SKRPKPAEEARLSLIVAWKALLRD  200

Query  193  PFMWYEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVLATVEVPTLLERRWGLNPEQLGLQF  252
            P +W                       ++F  +       +P   E   GL+    GL  
Sbjct  201  PVLWL------------------LLALLLFGFAFFGLLTYLPLYQEVL-GLSALLAGLLL  241

Query  253  LGPIIGSVLGEQLGGRMSDLWMRQRERKTRKRPEPEYRLWLSYIGYFLSIVGLIVFLVCT  312
                +   +G  L GR+SD   R+R            RL L+ +   L+ +GL++  +  
Sbjct  242  GLGGLLGAIGRLLLGRLSDRLGRRR------------RLLLALLLLILAALGLLLLSLTL  289

Query  313  QLSGNRWEVAPIIGIAIGAAGNQVVTTVLITFAVDCYPEEAGSVGVFITFVRQIWGFLGP  372
                    +  +           V   +    +     EE G+          + G LGP
Sbjct  290  SSLWLLLALLLLGFGFGL-----VFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.143    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00006527

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            85.2    4e-19


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 85.2 bits (211),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 72/195 (37%), Gaps = 34/195 (17%)

Query  89   LILVAFHACMGTFAASGIIPGYSIRPMKVQLLMRHFNSIAEDFGVSINKASYLTSLQIAI  148
            L L AF A +G       +P                  +AED G+S  +   L +L    
Sbjct  1    LFLAAFLAALGRSLLGPALPLL----------------LAEDLGISPTEIGLLLTLFSLG  44

Query  149  LGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKSTNYASVAACRALQAFFISPASG  208
               A      LS R+GRR + L+ L+   +  +    +++   +   R LQ         
Sbjct  45   YALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAG----  100

Query  209  KSCVDADEEGSRLTTVTAIGSAIVMETTFKKDRAKYMGIWTLMVTVGIPCGPFIFGFVAH  268
                           +     A++ +    ++R + +G+ +    +G   GP + G +A 
Sbjct  101  --------------ALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLAS  146

Query  269  RAGYVWIYWVLAMVS  283
              G+   + +LA++S
Sbjct  147  LFGWRAAFLILAILS  161



Lambda      K        H        a         alpha
   0.322    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00000292

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            80.2    3e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 80.2 bits (198),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 31/157 (20%), Positives = 63/157 (40%), Gaps = 18/157 (11%)

Query  13   IAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKS  72
            +AED G+S  +   L +L       A      LS R+GRR + L+ L+   +  +    +
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  73   TNYASVAACRALQAFFISPASGKSCVDADEEGSRLTTVTAIGSAIVMETTFKKDRAKYMG  132
            ++   +   R LQ                        +     A++ +    ++R + +G
Sbjct  83   SSLWLLLVLRVLQGLGAG------------------ALFPAALALIADWFPPEERGRALG  124

Query  133  IWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMVS  169
            + +    +G   GP + G +A   G+   + +LA++S
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILS  161



Lambda      K        H        a         alpha
   0.323    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00000293

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            86.7    7e-21


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 86.7 bits (215),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 62/139 (45%), Gaps = 0/139 (0%)

Query  13   IAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKS  72
            +AED G+S  +   L +L       A      LS R+GRR + L+ L+   +  +    +
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  73   TNYASVAACRALQAFFISPASAIGSAIVMETTFKKDRAKYMGIWTLMVTVGIPCGPFIFG  132
            ++   +   R LQ            A++ +    ++R + +G+ +    +G   GP + G
Sbjct  83   SSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGG  142

Query  133  FVAHRAGYVWIYWVLAMVS  151
             +A   G+   + +LA++S
Sbjct  143  LLASLFGWRAAFLILAILS  161



Lambda      K        H        a         alpha
   0.325    0.133    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00000294

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            90.2    6e-21


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 90.2 bits (224),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 38/181 (21%), Positives = 72/181 (40%), Gaps = 20/181 (11%)

Query  89   LILVAFHACMGTFAASGIIPGYSIIAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQR  148
            L L AF A +G       +P    +AED G+S  +   L +L       A      LS R
Sbjct  1    LFLAAFLAALGRSLLGPALPLL--LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDR  58

Query  149  YGRRPIFLLSLMCSCVCNIGCAKSTNYASVAACRALQAFFISPASGKSCVDADEEGSRLT  208
            +GRR + L+ L+   +  +    +++   +   R LQ                       
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAG------------------  100

Query  209  TVTAIGSAIVMETTFKKDRAKYMGIWTLMVTVGIPCGPFIFGFVAHRAGYVWIYWVLAMV  268
             +     A++ +    ++R + +G+ +    +G   GP + G +A   G+   + +LA++
Sbjct  101  ALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAIL  160

Query  269  S  269
            S
Sbjct  161  S  161



Lambda      K        H        a         alpha
   0.322    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00000296

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            101     1e-24


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 101 bits (254),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 67/360 (19%), Positives = 127/360 (35%), Gaps = 38/360 (11%)

Query  13   IAEDFGVSINKASYLTSLQIAILGGAPLFWKPLSQRYGRRPIFLLSLMCSCVCNIGCAKS  72
            +AED G+S  +   L +L       A      LS R+GRR + L+ L+   +  +    +
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  73   TNYASVAACRALQAFFISPASAIGSAIVMETTFKKDRAKYMGIWTLMVTVGIPCGPFIFG  132
            ++   +   R LQ            A++ +    ++R + +G+ +    +G   GP + G
Sbjct  83   SSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGG  142

Query  133  FVAHRAGYVWIYWVLAMINGGQFILYLFFGPETRYIGGDENPKEPAWKREYLSLRRIDLT  192
             +A   G+   + +LA+++    +L L   P          P E A     ++ + +   
Sbjct  143  LLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--SKRPKPAEEARLSLIVAWKALLRD  200

Query  193  PFMWYEFVKPLTMVMQPCIAIPAAAYAMVFCLSNVLATVEVPTLLERRWGLNPEQLGLQF  252
            P +W                       ++F  +       +P   E   GL+    GL  
Sbjct  201  PVLWL------------------LLALLLFGFAFFGLLTYLPLYQEVL-GLSALLAGLLL  241

Query  253  LGPIIGSVLGEQLGGRMSDLWMRQRERKTRKRPEPEYRLWLSYIGYFLSIVGLIVFLVCT  312
                +   +G  L GR+SD   R+R            RL L+ +   L+ +GL++  +  
Sbjct  242  GLGGLLGAIGRLLLGRLSDRLGRRR------------RLLLALLLLILAALGLLLLSLTL  289

Query  313  QLSGNRWEVAPIIGIAIGAAGNQVVTTVLITFAVDCYPEEAGSVGVFITFVRQIWGFLGP  372
                    +  +           V   +    +     EE G+          + G LGP
Sbjct  290  SSLWLLLALLLLGFGFGL-----VFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00006528

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00000297

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00006529

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00000298

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00006530

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00006531

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  68.3    2e-14


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 68.3 bits (167),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 54/123 (44%), Gaps = 4/123 (3%)

Query  42   NPIVFLHGLFGSKQNNRSISKVLARDLKRQVFTLDLRNH-GHSFHHHEHNYSV--MAKDV  98
             P++ LHGL GS    R ++  LARD   +V  LDLR     S    + +Y    +A+D+
Sbjct  1    PPVLLLHGLPGSSDLWRKLAPALARD-GFRVIALDLRGFGKSSRPKAQDDYRTDDLAEDL  59

Query  99   EKFIHQHDLAKCVLIGHSMGAKTAMTVALQSSDLVSALIPVDNAPVNAPLKSDFGKYVRG  158
            E  +    L K  L+GHSMG   A+  A +  D V AL+ +        L       +  
Sbjct  60   EYILEALGLEKVNLVGHSMGGLIALAYAAKYPDRVKALVLLGALDPPHELDEADRFILAL  119

Query  159  MQE  161
               
Sbjct  120  FPG  122



Lambda      K        H        a         alpha
   0.317    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00000299

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  96.0    6e-24


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 96.0 bits (239),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 62/251 (25%), Positives = 95/251 (38%), Gaps = 20/251 (8%)

Query  42   NPIVFLHGLFGSKQNNRSISKVLARDLKRQVFTLDLRNHGH-SFHHHEHNYSV--MAKDV  98
             P++ LHGL GS    R ++  LARD   +V  LDLR  G  S    + +Y    +A+D+
Sbjct  1    PPVLLLHGLPGSSDLWRKLAPALARD-GFRVIALDLRGFGKSSRPKAQDDYRTDDLAEDL  59

Query  99   EKFIHQHDLAKCVLIGHSMGAKTAMTVALQSSDLVSALI---PVDNAPVNAPLKSDFGKY  155
            E  +    L K  L+GHSMG   A+  A +  D V AL+    +D               
Sbjct  60   EYILEALGLEKVNLVGHSMGGLIALAYAAKYPDRVKALVLLGALDPPHELDEADRFILAL  119

Query  156  VRGMQEVEAQGVTKQSDADKILKEYEESLPIRQFLLTNLVRAEDGQKMKF---RIPLSVL  212
              G  +              + K           L   L++A      +F      L+  
Sbjct  120  FPGFFDGFVADFAPNPLGRLVAKLLALL-----LLRLRLLKALPLLNKRFPSGDYALAKS  174

Query  213  GP--AIPAMADFPFLEPGSVT--YDGPTLFVRGTKSKYVSDDTVPVIKKLFPNA-EIADV  267
                A+  +  +            D PTL + G +   V    +  + +LFPNA  +   
Sbjct  175  LVTGALLFIETWSTELRAKFLGRLDEPTLIIWGDQDPLVPPQALEKLAQLFPNARLVVIP  234

Query  268  EAGHWLISENP  278
            +AGH+   E P
Sbjct  235  DAGHFAFLEGP  245



Lambda      K        H        a         alpha
   0.319    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00000300

Length=301


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00000302

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00000301

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  96.0    6e-24


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 96.0 bits (239),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 62/251 (25%), Positives = 95/251 (38%), Gaps = 20/251 (8%)

Query  42   NPIVFLHGLFGSKQNNRSISKVLARDLKRQVFTLDLRNHGH-SFHHHEHNYSV--MAKDV  98
             P++ LHGL GS    R ++  LARD   +V  LDLR  G  S    + +Y    +A+D+
Sbjct  1    PPVLLLHGLPGSSDLWRKLAPALARD-GFRVIALDLRGFGKSSRPKAQDDYRTDDLAEDL  59

Query  99   EKFIHQHDLAKCVLIGHSMGAKTAMTVALQSSDLVSALI---PVDNAPVNAPLKSDFGKY  155
            E  +    L K  L+GHSMG   A+  A +  D V AL+    +D               
Sbjct  60   EYILEALGLEKVNLVGHSMGGLIALAYAAKYPDRVKALVLLGALDPPHELDEADRFILAL  119

Query  156  VRGMQEVEAQGVTKQSDADKILKEYEESLPIRQFLLTNLVRAEDGQKMKF---RIPLSVL  212
              G  +              + K           L   L++A      +F      L+  
Sbjct  120  FPGFFDGFVADFAPNPLGRLVAKLLALL-----LLRLRLLKALPLLNKRFPSGDYALAKS  174

Query  213  GP--AIPAMADFPFLEPGSVT--YDGPTLFVRGTKSKYVSDDTVPVIKKLFPNA-EIADV  267
                A+  +  +            D PTL + G +   V    +  + +LFPNA  +   
Sbjct  175  LVTGALLFIETWSTELRAKFLGRLDEPTLIIWGDQDPLVPPQALEKLAQLFPNARLVVIP  234

Query  268  EAGHWLISENP  278
            +AGH+   E P
Sbjct  235  DAGHFAFLEGP  245



Lambda      K        H        a         alpha
   0.319    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00006532

Length=301


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00000306

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  96.0    4e-24


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 96.0 bits (239),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 94/251 (37%), Gaps = 20/251 (8%)

Query  42   NPIVFLHGLFGSKQNNRSISKVLARDLKRQVFTLDLRNH-GHSFHHHEHNYSV--MAKDV  98
             P++ LHGL GS    R ++  LARD   +V  LDLR     S    + +Y    +A+D+
Sbjct  1    PPVLLLHGLPGSSDLWRKLAPALARD-GFRVIALDLRGFGKSSRPKAQDDYRTDDLAEDL  59

Query  99   EKFIHQHDLAKCVLIGHSMGAKTAMTVALQSSDLVSALI---PVDNAPVNAPLKSDFGKY  155
            E  +    L K  L+GHSMG   A+  A +  D V AL+    +D               
Sbjct  60   EYILEALGLEKVNLVGHSMGGLIALAYAAKYPDRVKALVLLGALDPPHELDEADRFILAL  119

Query  156  VRGMQEVEAQGVTKQSDADKILKEYEESLPIRQFLLTNLVRAEDGQKMKF---RIPLSVL  212
              G  +              + K           L   L++A      +F      L+  
Sbjct  120  FPGFFDGFVADFAPNPLGRLVAKLLALL-----LLRLRLLKALPLLNKRFPSGDYALAKS  174

Query  213  GP--AIPAMADFPFLEPGSVT--YDGPTLFVRGTKSKYVSDDTVPVIKKLFPNA-EIADV  267
                A+  +  +            D PTL + G +   V    +  + +LFPNA  +   
Sbjct  175  LVTGALLFIETWSTELRAKFLGRLDEPTLIIWGDQDPLVPPQALEKLAQLFPNARLVVIP  234

Query  268  EAGHWLISENP  278
            +AGH+   E P
Sbjct  235  DAGHFAFLEGP  245



Lambda      K        H        a         alpha
   0.319    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00006534

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  73.3    2e-16


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 73.3 bits (180),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 68/196 (35%), Gaps = 16/196 (8%)

Query  1    MAKDVEKFIHQHDLAKCVLIGHSMGAKTAMTVALQSSDLVSALI---PVDNAPVNAPLKS  57
            +A+D+E  +    L K  L+GHSMG   A+  A +  D V AL+    +D          
Sbjct  55   LAEDLEYILEALGLEKVNLVGHSMGGLIALAYAAKYPDRVKALVLLGALDPPHELDEADR  114

Query  58   DFGKYVRGMQEVEAQGVTKQSDADKILKEYEESLPIRQFLLTNLVRAEDGQKMKF---RI  114
                   G  +              + K           L   L++A      +F     
Sbjct  115  FILALFPGFFDGFVADFAPNPLGRLVAKLLALL-----LLRLRLLKALPLLNKRFPSGDY  169

Query  115  PLSVLGP--AIPAMADFPFLEPGSVT--YDGPTLFVRGTKSKYVSDDTVPVIKKLFPNA-  169
             L+      A+  +  +            D PTL + G +   V    +  + +LFPNA 
Sbjct  170  ALAKSLVTGALLFIETWSTELRAKFLGRLDEPTLIIWGDQDPLVPPQALEKLAQLFPNAR  229

Query  170  EIADVEAGHWLISENP  185
             +   +AGH+   E P
Sbjct  230  LVVIPDAGHFAFLEGP  245



Lambda      K        H        a         alpha
   0.318    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00006535

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00000303

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  73.3    4e-15


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 73.3 bits (180),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 68/196 (35%), Gaps = 16/196 (8%)

Query  302  MAKDVEKFIHQHDLAKCVLIGHSMGAKTAMTVALQSSDLVSALI---PVDNAPVNAPLKS  358
            +A+D+E  +    L K  L+GHSMG   A+  A +  D V AL+    +D          
Sbjct  55   LAEDLEYILEALGLEKVNLVGHSMGGLIALAYAAKYPDRVKALVLLGALDPPHELDEADR  114

Query  359  DFGKYVRGMQEVEAQGVTKQSDADKILKEYEESLPIRQFLLTNLVRAEDGQKMKF---RI  415
                   G  +              + K           L   L++A      +F     
Sbjct  115  FILALFPGFFDGFVADFAPNPLGRLVAKLLALL-----LLRLRLLKALPLLNKRFPSGDY  169

Query  416  PLSVLGP--AIPAMADFPFLEPGSVT--YDGPTLFVRGTKSKYVSDDTVPVIKKLFPNA-  470
             L+      A+  +  +            D PTL + G +   V    +  + +LFPNA 
Sbjct  170  ALAKSLVTGALLFIETWSTELRAKFLGRLDEPTLIIWGDQDPLVPPQALEKLAQLFPNAR  229

Query  471  EIADVEAGHWLISENP  486
             +   +AGH+   E P
Sbjct  230  LVVIPDAGHFAFLEGP  245



Lambda      K        H        a         alpha
   0.319    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 649534314


Query= TCONS_00006536

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460828 pfam03152, UFD1, Ubiquitin fusion degradation protein ...  350     1e-122


>CDD:460828 pfam03152, UFD1, Ubiquitin fusion degradation protein UFD1.  
Post-translational ubiquitin-protein conjugates are recognized 
for degradation by the ubiquitin fusion degradation (UFD) 
pathway. Several proteins involved in this pathway have been 
identified. This family includes UFD1, a 40kD protein that 
is essential for vegetative cell viability. The human UFD1 
gene is expressed at high levels during embryogenesis, especially 
in the eyes and in the inner ear primordia and is thought 
to be important in the determination of ectoderm-derived 
structures, including neural crest cells. In addition, this 
gene is deleted in the CATCH-22 (cardiac defects, abnormal 
facies, thymic hypoplasia, cleft palate and hypocalcaemia with 
deletions on chromosome 22) syndrome. This clinical syndrome 
is associated with a variety of developmental defects, all 
characterized by microdeletions on 22q11.2. Two such developmental 
defects are the DiGeorge syndrome OMIM:188400, and 
the velo-cardio- facial syndrome OMIM:145410. Several of the 
abnormalities associated with these conditions are thought 
to be due to defective neural crest cell differentiation.
Length=174

 Score = 350 bits (900),  Expect = 1e-122, Method: Composition-based stats.
 Identities = 124/177 (70%), Positives = 147/177 (83%), Gaps = 4/177 (2%)

Query  30   FDEYYRCYPVAML-PGPERENVNHGGKVIMPPSALDKLTRLHITYPMLFELHNGAKERMT  88
            FDEYYRCYPV+ML  G ERE++N+GGK+I+PPSALDKLTRL+I YPMLFEL N  KE+ T
Sbjct  1    FDEYYRCYPVSMLDKGNEREDLNYGGKIILPPSALDKLTRLNIEYPMLFELSNPNKEKST  60

Query  89   HAGVLEFIAEEGKIYLPFWLMQTLLLEPGDLVQVKSTDLPPGQFIKLQAQSTSFLDISDP  148
            H GVLEF AEEG++YLP+W+MQ L L+ GDLVQ+KS  LP G F+KLQ QST FLDIS+P
Sbjct  61   HCGVLEFTAEEGRVYLPYWMMQNLGLQEGDLVQIKSASLPKGTFVKLQPQSTDFLDISNP  120

Query  149  KAVLENAFRNFSCLTKGDVFTFAYNDQVYEMAVLETKPSNNTNAVSVLETDLEVDFA  205
            KAVLENA RNFS LTKGD+    YND++YE+ VLE KPS   NA+S++ETDLEVDFA
Sbjct  121  KAVLENALRNFSTLTKGDIIAINYNDKIYELDVLEVKPS---NAISIIETDLEVDFA  174



Lambda      K        H        a         alpha
   0.314    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0818    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00000304

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  73.3    2e-15


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 73.3 bits (180),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 68/196 (35%), Gaps = 16/196 (8%)

Query  149  MAKDVEKFIHQHDLAKCVLIGHSMGAKTAMTVALQSSDLVSALI---PVDNAPVNAPLKS  205
            +A+D+E  +    L K  L+GHSMG   A+  A +  D V AL+    +D          
Sbjct  55   LAEDLEYILEALGLEKVNLVGHSMGGLIALAYAAKYPDRVKALVLLGALDPPHELDEADR  114

Query  206  DFGKYVRGMQEVEAQGVTKQSDADKILKEYEESLPIRQFLLTNLVRAEDGQKMKF---RI  262
                   G  +              + K           L   L++A      +F     
Sbjct  115  FILALFPGFFDGFVADFAPNPLGRLVAKLLALL-----LLRLRLLKALPLLNKRFPSGDY  169

Query  263  PLSVLGP--AIPAMADFPFLEPGSVT--YDGPTLFVRGTKSKYVSDDTVPVIKKLFPNA-  317
             L+      A+  +  +            D PTL + G +   V    +  + +LFPNA 
Sbjct  170  ALAKSLVTGALLFIETWSTELRAKFLGRLDEPTLIIWGDQDPLVPPQALEKLAQLFPNAR  229

Query  318  EIADVEAGHWLISENP  333
             +   +AGH+   E P
Sbjct  230  LVVIPDAGHFAFLEGP  245



Lambda      K        H        a         alpha
   0.319    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00000305

Length=197


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00006537

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  73.3    2e-16


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 73.3 bits (180),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 68/196 (35%), Gaps = 16/196 (8%)

Query  1    MAKDVEKFIHQHDLAKCVLIGHSMGAKTAMTVALQSSDLVSALI---PVDNAPVNAPLKS  57
            +A+D+E  +    L K  L+GHSMG   A+  A +  D V AL+    +D          
Sbjct  55   LAEDLEYILEALGLEKVNLVGHSMGGLIALAYAAKYPDRVKALVLLGALDPPHELDEADR  114

Query  58   DFGKYVRGMQEVEAQGVTKQSDADKILKEYEESLPIRQFLLTNLVRAEDGQKMKF---RI  114
                   G  +              + K           L   L++A      +F     
Sbjct  115  FILALFPGFFDGFVADFAPNPLGRLVAKLLALL-----LLRLRLLKALPLLNKRFPSGDY  169

Query  115  PLSVLGP--AIPAMADFPFLEPGSVT--YDGPTLFVRGTKSKYVSDDTVPVIKKLFPNA-  169
             L+      A+  +  +            D PTL + G +   V    +  + +LFPNA 
Sbjct  170  ALAKSLVTGALLFIETWSTELRAKFLGRLDEPTLIIWGDQDPLVPPQALEKLAQLFPNAR  229

Query  170  EIADVEAGHWLISENP  185
             +   +AGH+   E P
Sbjct  230  LVVIPDAGHFAFLEGP  245



Lambda      K        H        a         alpha
   0.318    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00000307

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399217 pfam06068, TIP49, TIP49 C-terminus. This family consis...  578     0.0  
CDD:436097 pfam17856, TIP49_C, TIP49 AAA-lid domain. This family ...  86.5    1e-21


>CDD:399217 pfam06068, TIP49, TIP49 C-terminus.  This family consists of 
the C-terminal region of several eukaryotic and archaeal RuvB-like 
1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) 
proteins. The N-terminal domain contains the pfam00004 domain. 
In zebrafish, the liebeskummer (lik) mutation, causes 
development of hyperplastic embryonic hearts. lik encodes Reptin, 
a component of a DNA-stimulated ATPase complex. Beta-catenin 
and Pontin, a DNA-stimulated ATPase that is often part 
of complexes with Reptin, are in the same genetic pathways. 
The Reptin/Pontin ratio serves to regulate heart growth during 
development, at least in part via the beta-catenin pathway. 
TBP-interacting protein 49 (TIP49) was originally identified 
as a TBP-binding protein, and two related proteins are 
encoded by individual genes, tip49a and b. Although the function 
of this gene family has not been elucidated, they are 
supposed to play a critical role in nuclear events because they 
interact with various kinds of nuclear factors and have 
DNA helicase activities.TIP49a has been suggested to act as 
an autoantigen in some patients with autoimmune diseases.
Length=347

 Score = 578 bits (1492),  Expect = 0.0, Method: Composition-based stats.
 Identities = 216/347 (62%), Positives = 281/347 (81%), Gaps = 8/347 (2%)

Query  20   IAAHSHIRGLGVDADSLQPRTSSQGLVGQEKARKAAAVILQMVKEGKIAGRAVLIAGPPS  79
            I+AHSHIRGLG+D D  + R  S GLVGQEKAR+AA VI++M+KEGKIAGRAVLIAGPP 
Sbjct  2    ISAHSHIRGLGLDED-GEARYVSGGLVGQEKAREAAGVIVEMIKEGKIAGRAVLIAGPPG  60

Query  80   TGKTAIAMGMAQSLGSDVPFTMLAASEIFSMEMSKTEALTQAFRKSIGVRIKEESEIIEG  139
            TGKTA+A+ +++ LG D PFT ++ SE++S+EM KTEALTQAFRK+IGVRIKEE E+ EG
Sbjct  61   TGKTALAIAISKELGEDTPFTSISGSEVYSLEMKKTEALTQAFRKAIGVRIKEEKEVYEG  120

Query  140  EVVEIQV---DRSVTGGN--KQGKLTIKTTDMETIYDMGTKMIDSMTKERVMAGDVISID  194
            EVVE+++   +  ++GG   K GK+T+KTT ME    +G K+ + + KE+V AGDVI ID
Sbjct  121  EVVELEIEEAENPLSGGKTIKGGKITLKTTKMEKTLKLGPKIYEQLQKEKVSAGDVIYID  180

Query  195  KSSGKITKLGRSYARSRDYDAMGADTKFVQCPEGELQVRKEIVHTVSLHEIDVINSRTQG  254
            K++G++ KLGRS+AR+ D+D     T+FV CP+GE+  RKE+V TV+LH+IDV N+R QG
Sbjct  181  KNTGRVKKLGRSFARATDFDL--EATEFVPCPKGEVHKRKEVVQTVTLHDIDVANARPQG  238

Query  255  FLALFSGDTGEIRSEVRDQINTKVAEWKEEGKAEIIPGVLFIDEVHMLDIECFSYINRAL  314
             L+LFS   GEI SE+R++IN KV +W EEGKAEI+PGVLFIDEVHMLDIECFS++NRAL
Sbjct  239  ILSLFSPKKGEITSELREEINKKVNKWIEEGKAEIVPGVLFIDEVHMLDIECFSFLNRAL  298

Query  315  EAELAPIVIMASNRGQARIRGTTYTSPHGLPLDFLDRVVIVSTQPYS  361
            E++LAPIVI+A+NRG   IRGT   SPHG+PLD LDR++I++T+PY+
Sbjct  299  ESDLAPIVILATNRGICTIRGTDIISPHGIPLDLLDRLLIITTEPYT  345


>CDD:436097 pfam17856, TIP49_C, TIP49 AAA-lid domain.  This family consists 
of the C-terminal region of several eukaryotic and archaeal 
RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or 
TIP49b) proteins. The N-terminal domain contains the pfam00004 
domain. In zebrafish, the liebeskummer (lik) mutation, causes 
development of hyperplastic embryonic hearts. lik encodes 
Reptin, a component of a DNA-stimulated ATPase complex. 
Beta-catenin and Pontin, a DNA-stimulated ATPase that is often 
part of complexes with Reptin, are in the same genetic pathways. 
The Reptin/Pontin ratio serves to regulate heart growth 
during development, at least in part via the beta-catenin 
pathway. TBP-interacting protein 49 (TIP49) was originally 
identified as a TBP-binding protein, and two related proteins 
are encoded by individual genes, tip49a and b. Although the 
function of this gene family has not been elucidated, they 
are supposed to play a critical role in nuclear events because 
they interact with various kinds of nuclear factors and 
have DNA helicase activities.TIP49a has been suggested to act 
as an autoantigen in some patients with autoimmune diseases.
Length=66

 Score = 86.5 bits (215),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 0/66 (0%)

Query  368  ILAIRAQEEEIDLSPDALALLTKIGQESNLRYASNIITTSHLLSQKRKAKEVSIDDVQRS  427
            IL IRAQEE + +  +AL LL KIG E++LRYA  ++T + +L++KR  KEV + DV+ +
Sbjct  1    ILKIRAQEEGVKIDEEALDLLAKIGTETSLRYAIQLLTPASILAKKRGGKEVEVQDVEEA  60

Query  428  YRLFYD  433
            Y LF D
Sbjct  61   YELFLD  66



Lambda      K        H        a         alpha
   0.316    0.132    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581273816


Query= TCONS_00000308

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460828 pfam03152, UFD1, Ubiquitin fusion degradation protein ...  350     1e-122


>CDD:460828 pfam03152, UFD1, Ubiquitin fusion degradation protein UFD1.  
Post-translational ubiquitin-protein conjugates are recognized 
for degradation by the ubiquitin fusion degradation (UFD) 
pathway. Several proteins involved in this pathway have been 
identified. This family includes UFD1, a 40kD protein that 
is essential for vegetative cell viability. The human UFD1 
gene is expressed at high levels during embryogenesis, especially 
in the eyes and in the inner ear primordia and is thought 
to be important in the determination of ectoderm-derived 
structures, including neural crest cells. In addition, this 
gene is deleted in the CATCH-22 (cardiac defects, abnormal 
facies, thymic hypoplasia, cleft palate and hypocalcaemia with 
deletions on chromosome 22) syndrome. This clinical syndrome 
is associated with a variety of developmental defects, all 
characterized by microdeletions on 22q11.2. Two such developmental 
defects are the DiGeorge syndrome OMIM:188400, and 
the velo-cardio- facial syndrome OMIM:145410. Several of the 
abnormalities associated with these conditions are thought 
to be due to defective neural crest cell differentiation.
Length=174

 Score = 350 bits (900),  Expect = 1e-122, Method: Composition-based stats.
 Identities = 124/177 (70%), Positives = 147/177 (83%), Gaps = 4/177 (2%)

Query  30   FDEYYRCYPVAML-PGPERENVNHGGKVIMPPSALDKLTRLHITYPMLFELHNGAKERMT  88
            FDEYYRCYPV+ML  G ERE++N+GGK+I+PPSALDKLTRL+I YPMLFEL N  KE+ T
Sbjct  1    FDEYYRCYPVSMLDKGNEREDLNYGGKIILPPSALDKLTRLNIEYPMLFELSNPNKEKST  60

Query  89   HAGVLEFIAEEGKIYLPFWLMQTLLLEPGDLVQVKSTDLPPGQFIKLQAQSTSFLDISDP  148
            H GVLEF AEEG++YLP+W+MQ L L+ GDLVQ+KS  LP G F+KLQ QST FLDIS+P
Sbjct  61   HCGVLEFTAEEGRVYLPYWMMQNLGLQEGDLVQIKSASLPKGTFVKLQPQSTDFLDISNP  120

Query  149  KAVLENAFRNFSCLTKGDVFTFAYNDQVYEMAVLETKPSNNTNAVSVLETDLEVDFA  205
            KAVLENA RNFS LTKGD+    YND++YE+ VLE KPS   NA+S++ETDLEVDFA
Sbjct  121  KAVLENALRNFSTLTKGDIIAINYNDKIYELDVLEVKPS---NAISIIETDLEVDFA  174



Lambda      K        H        a         alpha
   0.314    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00000310

Length=898
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459854 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain...  517     2e-178
CDD:461355 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain...  142     8e-41 
CDD:367994 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit...  150     6e-40 
CDD:428012 pfam04566, RNA_pol_Rpb2_4, RNA polymerase Rpb2, domain...  108     6e-29 
CDD:428011 pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, domain...  82.6    6e-20 
CDD:398318 pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, domain...  79.7    1e-17 
CDD:428013 pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, domain...  66.4    2e-14 


>CDD:459854 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain 6.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain represents the hybrid binding 
domain and the wall domain. The hybrid binding domain binds 
the nascent RNA strand / template DNA strand in the Pol II 
transcription elongation complex. This domain contains the 
important structural motifs, switch 3 and the flap loop and 
binds an active site metal ion. This domain is also involved 
in binding to Rpb1 and Rpb3. Many of the bacterial members 
contain large insertions within this domain, as region known 
as dispensable region 2 (DRII).
Length=371

 Score = 517 bits (1335),  Expect = 2e-178, Method: Composition-based stats.
 Identities = 173/379 (46%), Positives = 231/379 (61%), Gaps = 15/379 (4%)

Query  430  VAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIEL  489
            VA LIP+  HNQSPRNTYQCAMGKQA+G    N+F R D   Y++ YPQKP+VK+  +E 
Sbjct  1    VASLIPFVDHNQSPRNTYQCAMGKQAMGIYTLNKFYRSDQNTYVLCYPQKPLVKTGAVEA  60

Query  490  VKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTK  549
              + +LP GQNA+VAVMSY+GY+ EDA+++NK SVDRGF      ++     +    G  
Sbjct  61   GGFGELPLGQNAIVAVMSYTGYNQEDAIIINKSSVDRGFFTSIHIKEIEA--RKTKLGPI  118

Query  550  DRL--NPPTYENGAPIRKHALLEADGLAAVGEQVNAGEVYINKSTPEQSN--LSGIGSDA  605
            + +  + P             L+ DG+  VG +V  G++ + K  P +    L  I  + 
Sbjct  119  EEITRDIP----NVSEEALKKLDEDGIVRVGAEVKPGDILVGKVGPTELTKLLRAIFGEK  174

Query  606  GRPVQYTPTPMTYKLHDPAYIDKVM-YSVQENENQLVKVLVRQTRRPEVGDKFSSRHGQK  664
             R      T +     +   +D V+ + +     ++VKV +RQ R+PEVGDKF+SRHGQK
Sbjct  175  AR--DVKDTSLKVPPGEEGVVDDVIVFELPPGGIKMVKVYIRQKRKPEVGDKFASRHGQK  232

Query  665  GVVGIIADQVDMPFTDSGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGHHGYGTCF  724
            GVV  I  Q DMPFT+ GI PDII+NPHG PSRMT+G++LE   GKA  L G     T F
Sbjct  233  GVVSRILPQEDMPFTEDGIPPDIILNPHGVPSRMTIGQLLETHLGKAAALLGVFVDATPF  292

Query  725  GG--TPVEEASRVLIDHGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHS  782
             G  T VE+   +L   G++Y GK+ L  G TGE     +F GPIYYQKLKHMV DK+H+
Sbjct  293  DGASTEVEDIGELLEKAGYNYYGKEVLYDGRTGEPFEAPIFVGPIYYQKLKHMVDDKIHA  352

Query  783  RARGPRAILTRQPTEGRSR  801
            R+ GP ++LTRQP  GR+R
Sbjct  353  RSTGPYSLLTRQPLGGRAR  371


>CDD:461355 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain 7.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Rpb2 is the second largest subunit of the 
RNA polymerase. This domain comprised of the structural domains 
anchor and clamp. The clamp region (C-terminal) contains 
a zinc-binding motif. The clamp region is named due to its 
interaction with the clamp domain found in Rpb1. The domain 
also contains a region termed "switch 4". The switches within 
the polymerase are thought to signal different stages of 
transcription.
Length=87

 Score = 142 bits (361),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 52/87 (60%), Gaps = 0/87 (0%)

Query  803  GGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVV  862
            GGLR GEMER  LIAYG +  L ERL I SD +E+DVC +CG     N C  CK    + 
Sbjct  1    GGLRFGEMERWALIAYGAAHTLQERLTIKSDAYEVDVCGRCGLYAAYNKCPICKGETDIS  60

Query  863  KMTIPYAAKLLIQELMSMNVTARLKLD  889
               IP + KLL QEL S+ +  RL L+
Sbjct  61   PGYIPESFKLLFQELQSLGIDPRLLLE  87


>CDD:367994 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to three 
in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain forms one of the two distinctive 
lobes of the Rpb2 structure. This domain is also known as 
the protrusion domain. The other lobe (pfam04561) is nested 
within this domain.
Length=396

 Score = 150 bits (381),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 7/177 (4%)

Query  1    MGIHTEQEMLLLVAG--VDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSS  58
            +G  +++E+  L+     D   Q++   + EE  K+ I TQ+QALD+IG R +   +   
Sbjct  225  LGFTSDREIFELICYDVNDQQLQEELLPSLEEGFKIRIQTQEQALDYIGGRGRAIFRMGR  284

Query  59   YRRTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGN  118
             R   I+ A E +   ++ H+    ++   KA ++ +M RR+L+       VDDRD+LGN
Sbjct  285  PREPRIKYAEEILQKEVLPHLGTYELDETKKAYFIGYMIRRLLLLALGRREVDDRDHLGN  344

Query  119  KRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEQFDAWTVMSMHSNHITQ  175
            KRL LAG LLA LF  LFKK   D++  + KVL   +     D    + +++  IT 
Sbjct  345  KRLRLAGPLLASLFRVLFKKLVRDVRERLQKVLGSPD-----DLMLQLLVNAKPITS  396


>CDD:428012 pfam04566, RNA_pol_Rpb2_4, RNA polymerase Rpb2, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 4, is also known as the external 
2 domain.
Length=62

 Score = 108 bits (272),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  303  INGTPIALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQCAVHIATDDGRICRPLIVVE  362
            +NG  I + R P+  +   R+LRR G+ISE VSI  +  +  V I TD GR+CRPLI+VE
Sbjct  3    LNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE  62


>CDD:428011 pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 3, s also known as the fork domain 
and is proximal to catalytic site.
Length=67

 Score = 82.6 bits (205),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 27/66 (41%), Positives = 39/66 (59%), Gaps = 3/66 (5%)

Query  201  VLSRLSYIAALGMMTRISS---QFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKN  257
            VL R +Y++ L  + R++S      +  K +  R L PS +G +CP +TPEG  CGLVK+
Sbjct  2    VLDRTNYLSTLSHLRRVNSPRGGLFREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKH  61

Query  258  LALMTH  263
            LAL   
Sbjct  62   LALYAR  67


>CDD:398318 pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Rpb2 is the second largest subunit of the 
RNA polymerase. This domain forms one of the two distinctive 
lobes of the Rpb2 structure. This domain is also known as 
the lobe domain. DNA has been demonstrated to bind to the concave 
surface of the lobe domain, and plays a role in maintaining 
the transcription bubble. Many of the bacterial members 
contain large insertions within this domain, as region known 
as dispensable region 1 (DRI).
Length=185

 Score = 79.7 bits (197),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 34/126 (27%), Positives = 58/126 (46%), Gaps = 5/126 (4%)

Query  1    MGIHTEQEMLLLVAGVDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSSYR  60
            +G+ +++E+L  +    +  Q    +  E      IYTQ++ALD+IG    + R+    R
Sbjct  61   LGLVSDREILDRLCYDFNDPQMLELLKPELEEAENIYTQEEALDYIGKGFAL-RRGEEPR  119

Query  61   RTHIQEAVEAIAS--VIISHI--EVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYL  116
                +E + +      +  H+       N R KA  + +M  R+L  K      DD D+L
Sbjct  120  LQRAREILYSRDPKYNLNKHLGLNEPFENERLKAQDILYMIDRLLNLKLGRRKPDDIDHL  179

Query  117  GNKRLE  122
            GNKR+ 
Sbjct  180  GNKRVR  185


>CDD:428013 pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 5, is also known as the external 
2 domain.
Length=53

 Score = 66.4 bits (163),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 19/53 (36%), Positives = 27/53 (51%), Gaps = 12/53 (23%)

Query  383  FDDFLAQGLVEYLDVNEENDSLIALYEKDI------------TDTTTHLEIEP  423
            + D L +G++EYLD  EE  S+IA+  +D+              T TH EI P
Sbjct  1    WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESSREEREGPYAHTYTHCEIHP  53



Lambda      K        H        a         alpha
   0.321    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1152717742


Query= TCONS_00000309

Length=898
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459854 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain...  517     2e-178
CDD:461355 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain...  142     8e-41 
CDD:367994 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit...  150     6e-40 
CDD:428012 pfam04566, RNA_pol_Rpb2_4, RNA polymerase Rpb2, domain...  108     6e-29 
CDD:428011 pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, domain...  82.6    6e-20 
CDD:398318 pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, domain...  79.7    1e-17 
CDD:428013 pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, domain...  66.4    2e-14 


>CDD:459854 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain 6.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain represents the hybrid binding 
domain and the wall domain. The hybrid binding domain binds 
the nascent RNA strand / template DNA strand in the Pol II 
transcription elongation complex. This domain contains the 
important structural motifs, switch 3 and the flap loop and 
binds an active site metal ion. This domain is also involved 
in binding to Rpb1 and Rpb3. Many of the bacterial members 
contain large insertions within this domain, as region known 
as dispensable region 2 (DRII).
Length=371

 Score = 517 bits (1335),  Expect = 2e-178, Method: Composition-based stats.
 Identities = 173/379 (46%), Positives = 231/379 (61%), Gaps = 15/379 (4%)

Query  430  VAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIEL  489
            VA LIP+  HNQSPRNTYQCAMGKQA+G    N+F R D   Y++ YPQKP+VK+  +E 
Sbjct  1    VASLIPFVDHNQSPRNTYQCAMGKQAMGIYTLNKFYRSDQNTYVLCYPQKPLVKTGAVEA  60

Query  490  VKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTK  549
              + +LP GQNA+VAVMSY+GY+ EDA+++NK SVDRGF      ++     +    G  
Sbjct  61   GGFGELPLGQNAIVAVMSYTGYNQEDAIIINKSSVDRGFFTSIHIKEIEA--RKTKLGPI  118

Query  550  DRL--NPPTYENGAPIRKHALLEADGLAAVGEQVNAGEVYINKSTPEQSN--LSGIGSDA  605
            + +  + P             L+ DG+  VG +V  G++ + K  P +    L  I  + 
Sbjct  119  EEITRDIP----NVSEEALKKLDEDGIVRVGAEVKPGDILVGKVGPTELTKLLRAIFGEK  174

Query  606  GRPVQYTPTPMTYKLHDPAYIDKVM-YSVQENENQLVKVLVRQTRRPEVGDKFSSRHGQK  664
             R      T +     +   +D V+ + +     ++VKV +RQ R+PEVGDKF+SRHGQK
Sbjct  175  AR--DVKDTSLKVPPGEEGVVDDVIVFELPPGGIKMVKVYIRQKRKPEVGDKFASRHGQK  232

Query  665  GVVGIIADQVDMPFTDSGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGHHGYGTCF  724
            GVV  I  Q DMPFT+ GI PDII+NPHG PSRMT+G++LE   GKA  L G     T F
Sbjct  233  GVVSRILPQEDMPFTEDGIPPDIILNPHGVPSRMTIGQLLETHLGKAAALLGVFVDATPF  292

Query  725  GG--TPVEEASRVLIDHGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHS  782
             G  T VE+   +L   G++Y GK+ L  G TGE     +F GPIYYQKLKHMV DK+H+
Sbjct  293  DGASTEVEDIGELLEKAGYNYYGKEVLYDGRTGEPFEAPIFVGPIYYQKLKHMVDDKIHA  352

Query  783  RARGPRAILTRQPTEGRSR  801
            R+ GP ++LTRQP  GR+R
Sbjct  353  RSTGPYSLLTRQPLGGRAR  371


>CDD:461355 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain 7.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Rpb2 is the second largest subunit of the 
RNA polymerase. This domain comprised of the structural domains 
anchor and clamp. The clamp region (C-terminal) contains 
a zinc-binding motif. The clamp region is named due to its 
interaction with the clamp domain found in Rpb1. The domain 
also contains a region termed "switch 4". The switches within 
the polymerase are thought to signal different stages of 
transcription.
Length=87

 Score = 142 bits (361),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 52/87 (60%), Gaps = 0/87 (0%)

Query  803  GGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVV  862
            GGLR GEMER  LIAYG +  L ERL I SD +E+DVC +CG     N C  CK    + 
Sbjct  1    GGLRFGEMERWALIAYGAAHTLQERLTIKSDAYEVDVCGRCGLYAAYNKCPICKGETDIS  60

Query  863  KMTIPYAAKLLIQELMSMNVTARLKLD  889
               IP + KLL QEL S+ +  RL L+
Sbjct  61   PGYIPESFKLLFQELQSLGIDPRLLLE  87


>CDD:367994 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to three 
in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain forms one of the two distinctive 
lobes of the Rpb2 structure. This domain is also known as 
the protrusion domain. The other lobe (pfam04561) is nested 
within this domain.
Length=396

 Score = 150 bits (381),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 7/177 (4%)

Query  1    MGIHTEQEMLLLVAG--VDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSS  58
            +G  +++E+  L+     D   Q++   + EE  K+ I TQ+QALD+IG R +   +   
Sbjct  225  LGFTSDREIFELICYDVNDQQLQEELLPSLEEGFKIRIQTQEQALDYIGGRGRAIFRMGR  284

Query  59   YRRTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGN  118
             R   I+ A E +   ++ H+    ++   KA ++ +M RR+L+       VDDRD+LGN
Sbjct  285  PREPRIKYAEEILQKEVLPHLGTYELDETKKAYFIGYMIRRLLLLALGRREVDDRDHLGN  344

Query  119  KRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEQFDAWTVMSMHSNHITQ  175
            KRL LAG LLA LF  LFKK   D++  + KVL   +     D    + +++  IT 
Sbjct  345  KRLRLAGPLLASLFRVLFKKLVRDVRERLQKVLGSPD-----DLMLQLLVNAKPITS  396


>CDD:428012 pfam04566, RNA_pol_Rpb2_4, RNA polymerase Rpb2, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 4, is also known as the external 
2 domain.
Length=62

 Score = 108 bits (272),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  303  INGTPIALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQCAVHIATDDGRICRPLIVVE  362
            +NG  I + R P+  +   R+LRR G+ISE VSI  +  +  V I TD GR+CRPLI+VE
Sbjct  3    LNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE  62


>CDD:428011 pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 3, s also known as the fork domain 
and is proximal to catalytic site.
Length=67

 Score = 82.6 bits (205),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 27/66 (41%), Positives = 39/66 (59%), Gaps = 3/66 (5%)

Query  201  VLSRLSYIAALGMMTRISS---QFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKN  257
            VL R +Y++ L  + R++S      +  K +  R L PS +G +CP +TPEG  CGLVK+
Sbjct  2    VLDRTNYLSTLSHLRRVNSPRGGLFREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKH  61

Query  258  LALMTH  263
            LAL   
Sbjct  62   LALYAR  67


>CDD:398318 pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Rpb2 is the second largest subunit of the 
RNA polymerase. This domain forms one of the two distinctive 
lobes of the Rpb2 structure. This domain is also known as 
the lobe domain. DNA has been demonstrated to bind to the concave 
surface of the lobe domain, and plays a role in maintaining 
the transcription bubble. Many of the bacterial members 
contain large insertions within this domain, as region known 
as dispensable region 1 (DRI).
Length=185

 Score = 79.7 bits (197),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 34/126 (27%), Positives = 58/126 (46%), Gaps = 5/126 (4%)

Query  1    MGIHTEQEMLLLVAGVDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSSYR  60
            +G+ +++E+L  +    +  Q    +  E      IYTQ++ALD+IG    + R+    R
Sbjct  61   LGLVSDREILDRLCYDFNDPQMLELLKPELEEAENIYTQEEALDYIGKGFAL-RRGEEPR  119

Query  61   RTHIQEAVEAIAS--VIISHI--EVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYL  116
                +E + +      +  H+       N R KA  + +M  R+L  K      DD D+L
Sbjct  120  LQRAREILYSRDPKYNLNKHLGLNEPFENERLKAQDILYMIDRLLNLKLGRRKPDDIDHL  179

Query  117  GNKRLE  122
            GNKR+ 
Sbjct  180  GNKRVR  185


>CDD:428013 pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 5, is also known as the external 
2 domain.
Length=53

 Score = 66.4 bits (163),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 19/53 (36%), Positives = 27/53 (51%), Gaps = 12/53 (23%)

Query  383  FDDFLAQGLVEYLDVNEENDSLIALYEKDI------------TDTTTHLEIEP  423
            + D L +G++EYLD  EE  S+IA+  +D+              T TH EI P
Sbjct  1    WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESSREEREGPYAHTYTHCEIHP  53



Lambda      K        H        a         alpha
   0.321    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1152717742


Query= TCONS_00006539

Length=898
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459854 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain...  517     2e-178
CDD:461355 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain...  142     8e-41 
CDD:367994 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit...  150     6e-40 
CDD:428012 pfam04566, RNA_pol_Rpb2_4, RNA polymerase Rpb2, domain...  108     6e-29 
CDD:428011 pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, domain...  82.6    6e-20 
CDD:398318 pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, domain...  79.7    1e-17 
CDD:428013 pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, domain...  66.4    2e-14 


>CDD:459854 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain 6.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain represents the hybrid binding 
domain and the wall domain. The hybrid binding domain binds 
the nascent RNA strand / template DNA strand in the Pol II 
transcription elongation complex. This domain contains the 
important structural motifs, switch 3 and the flap loop and 
binds an active site metal ion. This domain is also involved 
in binding to Rpb1 and Rpb3. Many of the bacterial members 
contain large insertions within this domain, as region known 
as dispensable region 2 (DRII).
Length=371

 Score = 517 bits (1335),  Expect = 2e-178, Method: Composition-based stats.
 Identities = 173/379 (46%), Positives = 231/379 (61%), Gaps = 15/379 (4%)

Query  430  VAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIEL  489
            VA LIP+  HNQSPRNTYQCAMGKQA+G    N+F R D   Y++ YPQKP+VK+  +E 
Sbjct  1    VASLIPFVDHNQSPRNTYQCAMGKQAMGIYTLNKFYRSDQNTYVLCYPQKPLVKTGAVEA  60

Query  490  VKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTK  549
              + +LP GQNA+VAVMSY+GY+ EDA+++NK SVDRGF      ++     +    G  
Sbjct  61   GGFGELPLGQNAIVAVMSYTGYNQEDAIIINKSSVDRGFFTSIHIKEIEA--RKTKLGPI  118

Query  550  DRL--NPPTYENGAPIRKHALLEADGLAAVGEQVNAGEVYINKSTPEQSN--LSGIGSDA  605
            + +  + P             L+ DG+  VG +V  G++ + K  P +    L  I  + 
Sbjct  119  EEITRDIP----NVSEEALKKLDEDGIVRVGAEVKPGDILVGKVGPTELTKLLRAIFGEK  174

Query  606  GRPVQYTPTPMTYKLHDPAYIDKVM-YSVQENENQLVKVLVRQTRRPEVGDKFSSRHGQK  664
             R      T +     +   +D V+ + +     ++VKV +RQ R+PEVGDKF+SRHGQK
Sbjct  175  AR--DVKDTSLKVPPGEEGVVDDVIVFELPPGGIKMVKVYIRQKRKPEVGDKFASRHGQK  232

Query  665  GVVGIIADQVDMPFTDSGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGHHGYGTCF  724
            GVV  I  Q DMPFT+ GI PDII+NPHG PSRMT+G++LE   GKA  L G     T F
Sbjct  233  GVVSRILPQEDMPFTEDGIPPDIILNPHGVPSRMTIGQLLETHLGKAAALLGVFVDATPF  292

Query  725  GG--TPVEEASRVLIDHGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHS  782
             G  T VE+   +L   G++Y GK+ L  G TGE     +F GPIYYQKLKHMV DK+H+
Sbjct  293  DGASTEVEDIGELLEKAGYNYYGKEVLYDGRTGEPFEAPIFVGPIYYQKLKHMVDDKIHA  352

Query  783  RARGPRAILTRQPTEGRSR  801
            R+ GP ++LTRQP  GR+R
Sbjct  353  RSTGPYSLLTRQPLGGRAR  371


>CDD:461355 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain 7.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Rpb2 is the second largest subunit of the 
RNA polymerase. This domain comprised of the structural domains 
anchor and clamp. The clamp region (C-terminal) contains 
a zinc-binding motif. The clamp region is named due to its 
interaction with the clamp domain found in Rpb1. The domain 
also contains a region termed "switch 4". The switches within 
the polymerase are thought to signal different stages of 
transcription.
Length=87

 Score = 142 bits (361),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 52/87 (60%), Gaps = 0/87 (0%)

Query  803  GGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVV  862
            GGLR GEMER  LIAYG +  L ERL I SD +E+DVC +CG     N C  CK    + 
Sbjct  1    GGLRFGEMERWALIAYGAAHTLQERLTIKSDAYEVDVCGRCGLYAAYNKCPICKGETDIS  60

Query  863  KMTIPYAAKLLIQELMSMNVTARLKLD  889
               IP + KLL QEL S+ +  RL L+
Sbjct  61   PGYIPESFKLLFQELQSLGIDPRLLLE  87


>CDD:367994 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to three 
in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain forms one of the two distinctive 
lobes of the Rpb2 structure. This domain is also known as 
the protrusion domain. The other lobe (pfam04561) is nested 
within this domain.
Length=396

 Score = 150 bits (381),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 7/177 (4%)

Query  1    MGIHTEQEMLLLVAG--VDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSS  58
            +G  +++E+  L+     D   Q++   + EE  K+ I TQ+QALD+IG R +   +   
Sbjct  225  LGFTSDREIFELICYDVNDQQLQEELLPSLEEGFKIRIQTQEQALDYIGGRGRAIFRMGR  284

Query  59   YRRTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGN  118
             R   I+ A E +   ++ H+    ++   KA ++ +M RR+L+       VDDRD+LGN
Sbjct  285  PREPRIKYAEEILQKEVLPHLGTYELDETKKAYFIGYMIRRLLLLALGRREVDDRDHLGN  344

Query  119  KRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEQFDAWTVMSMHSNHITQ  175
            KRL LAG LLA LF  LFKK   D++  + KVL   +     D    + +++  IT 
Sbjct  345  KRLRLAGPLLASLFRVLFKKLVRDVRERLQKVLGSPD-----DLMLQLLVNAKPITS  396


>CDD:428012 pfam04566, RNA_pol_Rpb2_4, RNA polymerase Rpb2, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 4, is also known as the external 
2 domain.
Length=62

 Score = 108 bits (272),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  303  INGTPIALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQCAVHIATDDGRICRPLIVVE  362
            +NG  I + R P+  +   R+LRR G+ISE VSI  +  +  V I TD GR+CRPLI+VE
Sbjct  3    LNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE  62


>CDD:428011 pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 3, s also known as the fork domain 
and is proximal to catalytic site.
Length=67

 Score = 82.6 bits (205),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 27/66 (41%), Positives = 39/66 (59%), Gaps = 3/66 (5%)

Query  201  VLSRLSYIAALGMMTRISS---QFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKN  257
            VL R +Y++ L  + R++S      +  K +  R L PS +G +CP +TPEG  CGLVK+
Sbjct  2    VLDRTNYLSTLSHLRRVNSPRGGLFREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKH  61

Query  258  LALMTH  263
            LAL   
Sbjct  62   LALYAR  67


>CDD:398318 pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Rpb2 is the second largest subunit of the 
RNA polymerase. This domain forms one of the two distinctive 
lobes of the Rpb2 structure. This domain is also known as 
the lobe domain. DNA has been demonstrated to bind to the concave 
surface of the lobe domain, and plays a role in maintaining 
the transcription bubble. Many of the bacterial members 
contain large insertions within this domain, as region known 
as dispensable region 1 (DRI).
Length=185

 Score = 79.7 bits (197),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 34/126 (27%), Positives = 58/126 (46%), Gaps = 5/126 (4%)

Query  1    MGIHTEQEMLLLVAGVDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSSYR  60
            +G+ +++E+L  +    +  Q    +  E      IYTQ++ALD+IG    + R+    R
Sbjct  61   LGLVSDREILDRLCYDFNDPQMLELLKPELEEAENIYTQEEALDYIGKGFAL-RRGEEPR  119

Query  61   RTHIQEAVEAIAS--VIISHI--EVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYL  116
                +E + +      +  H+       N R KA  + +M  R+L  K      DD D+L
Sbjct  120  LQRAREILYSRDPKYNLNKHLGLNEPFENERLKAQDILYMIDRLLNLKLGRRKPDDIDHL  179

Query  117  GNKRLE  122
            GNKR+ 
Sbjct  180  GNKRVR  185


>CDD:428013 pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 5, is also known as the external 
2 domain.
Length=53

 Score = 66.4 bits (163),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 19/53 (36%), Positives = 27/53 (51%), Gaps = 12/53 (23%)

Query  383  FDDFLAQGLVEYLDVNEENDSLIALYEKDI------------TDTTTHLEIEP  423
            + D L +G++EYLD  EE  S+IA+  +D+              T TH EI P
Sbjct  1    WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESSREEREGPYAHTYTHCEIHP  53



Lambda      K        H        a         alpha
   0.321    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1152717742


Query= TCONS_00000311

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399217 pfam06068, TIP49, TIP49 C-terminus. This family consis...  578     0.0  
CDD:436097 pfam17856, TIP49_C, TIP49 AAA-lid domain. This family ...  86.5    1e-21


>CDD:399217 pfam06068, TIP49, TIP49 C-terminus.  This family consists of 
the C-terminal region of several eukaryotic and archaeal RuvB-like 
1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) 
proteins. The N-terminal domain contains the pfam00004 domain. 
In zebrafish, the liebeskummer (lik) mutation, causes 
development of hyperplastic embryonic hearts. lik encodes Reptin, 
a component of a DNA-stimulated ATPase complex. Beta-catenin 
and Pontin, a DNA-stimulated ATPase that is often part 
of complexes with Reptin, are in the same genetic pathways. 
The Reptin/Pontin ratio serves to regulate heart growth during 
development, at least in part via the beta-catenin pathway. 
TBP-interacting protein 49 (TIP49) was originally identified 
as a TBP-binding protein, and two related proteins are 
encoded by individual genes, tip49a and b. Although the function 
of this gene family has not been elucidated, they are 
supposed to play a critical role in nuclear events because they 
interact with various kinds of nuclear factors and have 
DNA helicase activities.TIP49a has been suggested to act as 
an autoantigen in some patients with autoimmune diseases.
Length=347

 Score = 578 bits (1492),  Expect = 0.0, Method: Composition-based stats.
 Identities = 216/347 (62%), Positives = 281/347 (81%), Gaps = 8/347 (2%)

Query  20   IAAHSHIRGLGVDADSLQPRTSSQGLVGQEKARKAAAVILQMVKEGKIAGRAVLIAGPPS  79
            I+AHSHIRGLG+D D  + R  S GLVGQEKAR+AA VI++M+KEGKIAGRAVLIAGPP 
Sbjct  2    ISAHSHIRGLGLDED-GEARYVSGGLVGQEKAREAAGVIVEMIKEGKIAGRAVLIAGPPG  60

Query  80   TGKTAIAMGMAQSLGSDVPFTMLAASEIFSMEMSKTEALTQAFRKSIGVRIKEESEIIEG  139
            TGKTA+A+ +++ LG D PFT ++ SE++S+EM KTEALTQAFRK+IGVRIKEE E+ EG
Sbjct  61   TGKTALAIAISKELGEDTPFTSISGSEVYSLEMKKTEALTQAFRKAIGVRIKEEKEVYEG  120

Query  140  EVVEIQV---DRSVTGGN--KQGKLTIKTTDMETIYDMGTKMIDSMTKERVMAGDVISID  194
            EVVE+++   +  ++GG   K GK+T+KTT ME    +G K+ + + KE+V AGDVI ID
Sbjct  121  EVVELEIEEAENPLSGGKTIKGGKITLKTTKMEKTLKLGPKIYEQLQKEKVSAGDVIYID  180

Query  195  KSSGKITKLGRSYARSRDYDAMGADTKFVQCPEGELQVRKEIVHTVSLHEIDVINSRTQG  254
            K++G++ KLGRS+AR+ D+D     T+FV CP+GE+  RKE+V TV+LH+IDV N+R QG
Sbjct  181  KNTGRVKKLGRSFARATDFDL--EATEFVPCPKGEVHKRKEVVQTVTLHDIDVANARPQG  238

Query  255  FLALFSGDTGEIRSEVRDQINTKVAEWKEEGKAEIIPGVLFIDEVHMLDIECFSYINRAL  314
             L+LFS   GEI SE+R++IN KV +W EEGKAEI+PGVLFIDEVHMLDIECFS++NRAL
Sbjct  239  ILSLFSPKKGEITSELREEINKKVNKWIEEGKAEIVPGVLFIDEVHMLDIECFSFLNRAL  298

Query  315  EAELAPIVIMASNRGQARIRGTTYTSPHGLPLDFLDRVVIVSTQPYS  361
            E++LAPIVI+A+NRG   IRGT   SPHG+PLD LDR++I++T+PY+
Sbjct  299  ESDLAPIVILATNRGICTIRGTDIISPHGIPLDLLDRLLIITTEPYT  345


>CDD:436097 pfam17856, TIP49_C, TIP49 AAA-lid domain.  This family consists 
of the C-terminal region of several eukaryotic and archaeal 
RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or 
TIP49b) proteins. The N-terminal domain contains the pfam00004 
domain. In zebrafish, the liebeskummer (lik) mutation, causes 
development of hyperplastic embryonic hearts. lik encodes 
Reptin, a component of a DNA-stimulated ATPase complex. 
Beta-catenin and Pontin, a DNA-stimulated ATPase that is often 
part of complexes with Reptin, are in the same genetic pathways. 
The Reptin/Pontin ratio serves to regulate heart growth 
during development, at least in part via the beta-catenin 
pathway. TBP-interacting protein 49 (TIP49) was originally 
identified as a TBP-binding protein, and two related proteins 
are encoded by individual genes, tip49a and b. Although the 
function of this gene family has not been elucidated, they 
are supposed to play a critical role in nuclear events because 
they interact with various kinds of nuclear factors and 
have DNA helicase activities.TIP49a has been suggested to act 
as an autoantigen in some patients with autoimmune diseases.
Length=66

 Score = 86.5 bits (215),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 0/66 (0%)

Query  368  ILAIRAQEEEIDLSPDALALLTKIGQESNLRYASNIITTSHLLSQKRKAKEVSIDDVQRS  427
            IL IRAQEE + +  +AL LL KIG E++LRYA  ++T + +L++KR  KEV + DV+ +
Sbjct  1    ILKIRAQEEGVKIDEEALDLLAKIGTETSLRYAIQLLTPASILAKKRGGKEVEVQDVEEA  60

Query  428  YRLFYD  433
            Y LF D
Sbjct  61   YELFLD  66



Lambda      K        H        a         alpha
   0.316    0.132    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581273816


Query= TCONS_00006541

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460828 pfam03152, UFD1, Ubiquitin fusion degradation protein ...  350     1e-122


>CDD:460828 pfam03152, UFD1, Ubiquitin fusion degradation protein UFD1.  
Post-translational ubiquitin-protein conjugates are recognized 
for degradation by the ubiquitin fusion degradation (UFD) 
pathway. Several proteins involved in this pathway have been 
identified. This family includes UFD1, a 40kD protein that 
is essential for vegetative cell viability. The human UFD1 
gene is expressed at high levels during embryogenesis, especially 
in the eyes and in the inner ear primordia and is thought 
to be important in the determination of ectoderm-derived 
structures, including neural crest cells. In addition, this 
gene is deleted in the CATCH-22 (cardiac defects, abnormal 
facies, thymic hypoplasia, cleft palate and hypocalcaemia with 
deletions on chromosome 22) syndrome. This clinical syndrome 
is associated with a variety of developmental defects, all 
characterized by microdeletions on 22q11.2. Two such developmental 
defects are the DiGeorge syndrome OMIM:188400, and 
the velo-cardio- facial syndrome OMIM:145410. Several of the 
abnormalities associated with these conditions are thought 
to be due to defective neural crest cell differentiation.
Length=174

 Score = 350 bits (900),  Expect = 1e-122, Method: Composition-based stats.
 Identities = 124/177 (70%), Positives = 147/177 (83%), Gaps = 4/177 (2%)

Query  30   FDEYYRCYPVAML-PGPERENVNHGGKVIMPPSALDKLTRLHITYPMLFELHNGAKERMT  88
            FDEYYRCYPV+ML  G ERE++N+GGK+I+PPSALDKLTRL+I YPMLFEL N  KE+ T
Sbjct  1    FDEYYRCYPVSMLDKGNEREDLNYGGKIILPPSALDKLTRLNIEYPMLFELSNPNKEKST  60

Query  89   HAGVLEFIAEEGKIYLPFWLMQTLLLEPGDLVQVKSTDLPPGQFIKLQAQSTSFLDISDP  148
            H GVLEF AEEG++YLP+W+MQ L L+ GDLVQ+KS  LP G F+KLQ QST FLDIS+P
Sbjct  61   HCGVLEFTAEEGRVYLPYWMMQNLGLQEGDLVQIKSASLPKGTFVKLQPQSTDFLDISNP  120

Query  149  KAVLENAFRNFSCLTKGDVFTFAYNDQVYEMAVLETKPSNNTNAVSVLETDLEVDFA  205
            KAVLENA RNFS LTKGD+    YND++YE+ VLE KPS   NA+S++ETDLEVDFA
Sbjct  121  KAVLENALRNFSTLTKGDIIAINYNDKIYELDVLEVKPS---NAISIIETDLEVDFA  174



Lambda      K        H        a         alpha
   0.314    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00006542

Length=898
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459854 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain...  517     2e-178
CDD:461355 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain...  142     8e-41 
CDD:367994 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit...  150     6e-40 
CDD:428012 pfam04566, RNA_pol_Rpb2_4, RNA polymerase Rpb2, domain...  108     6e-29 
CDD:428011 pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, domain...  82.6    6e-20 
CDD:398318 pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, domain...  79.7    1e-17 
CDD:428013 pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, domain...  66.4    2e-14 


>CDD:459854 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain 6.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain represents the hybrid binding 
domain and the wall domain. The hybrid binding domain binds 
the nascent RNA strand / template DNA strand in the Pol II 
transcription elongation complex. This domain contains the 
important structural motifs, switch 3 and the flap loop and 
binds an active site metal ion. This domain is also involved 
in binding to Rpb1 and Rpb3. Many of the bacterial members 
contain large insertions within this domain, as region known 
as dispensable region 2 (DRII).
Length=371

 Score = 517 bits (1335),  Expect = 2e-178, Method: Composition-based stats.
 Identities = 173/379 (46%), Positives = 231/379 (61%), Gaps = 15/379 (4%)

Query  430  VAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIEL  489
            VA LIP+  HNQSPRNTYQCAMGKQA+G    N+F R D   Y++ YPQKP+VK+  +E 
Sbjct  1    VASLIPFVDHNQSPRNTYQCAMGKQAMGIYTLNKFYRSDQNTYVLCYPQKPLVKTGAVEA  60

Query  490  VKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTK  549
              + +LP GQNA+VAVMSY+GY+ EDA+++NK SVDRGF      ++     +    G  
Sbjct  61   GGFGELPLGQNAIVAVMSYTGYNQEDAIIINKSSVDRGFFTSIHIKEIEA--RKTKLGPI  118

Query  550  DRL--NPPTYENGAPIRKHALLEADGLAAVGEQVNAGEVYINKSTPEQSN--LSGIGSDA  605
            + +  + P             L+ DG+  VG +V  G++ + K  P +    L  I  + 
Sbjct  119  EEITRDIP----NVSEEALKKLDEDGIVRVGAEVKPGDILVGKVGPTELTKLLRAIFGEK  174

Query  606  GRPVQYTPTPMTYKLHDPAYIDKVM-YSVQENENQLVKVLVRQTRRPEVGDKFSSRHGQK  664
             R      T +     +   +D V+ + +     ++VKV +RQ R+PEVGDKF+SRHGQK
Sbjct  175  AR--DVKDTSLKVPPGEEGVVDDVIVFELPPGGIKMVKVYIRQKRKPEVGDKFASRHGQK  232

Query  665  GVVGIIADQVDMPFTDSGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGHHGYGTCF  724
            GVV  I  Q DMPFT+ GI PDII+NPHG PSRMT+G++LE   GKA  L G     T F
Sbjct  233  GVVSRILPQEDMPFTEDGIPPDIILNPHGVPSRMTIGQLLETHLGKAAALLGVFVDATPF  292

Query  725  GG--TPVEEASRVLIDHGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHS  782
             G  T VE+   +L   G++Y GK+ L  G TGE     +F GPIYYQKLKHMV DK+H+
Sbjct  293  DGASTEVEDIGELLEKAGYNYYGKEVLYDGRTGEPFEAPIFVGPIYYQKLKHMVDDKIHA  352

Query  783  RARGPRAILTRQPTEGRSR  801
            R+ GP ++LTRQP  GR+R
Sbjct  353  RSTGPYSLLTRQPLGGRAR  371


>CDD:461355 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain 7.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Rpb2 is the second largest subunit of the 
RNA polymerase. This domain comprised of the structural domains 
anchor and clamp. The clamp region (C-terminal) contains 
a zinc-binding motif. The clamp region is named due to its 
interaction with the clamp domain found in Rpb1. The domain 
also contains a region termed "switch 4". The switches within 
the polymerase are thought to signal different stages of 
transcription.
Length=87

 Score = 142 bits (361),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 52/87 (60%), Gaps = 0/87 (0%)

Query  803  GGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVV  862
            GGLR GEMER  LIAYG +  L ERL I SD +E+DVC +CG     N C  CK    + 
Sbjct  1    GGLRFGEMERWALIAYGAAHTLQERLTIKSDAYEVDVCGRCGLYAAYNKCPICKGETDIS  60

Query  863  KMTIPYAAKLLIQELMSMNVTARLKLD  889
               IP + KLL QEL S+ +  RL L+
Sbjct  61   PGYIPESFKLLFQELQSLGIDPRLLLE  87


>CDD:367994 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to three 
in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain forms one of the two distinctive 
lobes of the Rpb2 structure. This domain is also known as 
the protrusion domain. The other lobe (pfam04561) is nested 
within this domain.
Length=396

 Score = 150 bits (381),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 7/177 (4%)

Query  1    MGIHTEQEMLLLVAG--VDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSS  58
            +G  +++E+  L+     D   Q++   + EE  K+ I TQ+QALD+IG R +   +   
Sbjct  225  LGFTSDREIFELICYDVNDQQLQEELLPSLEEGFKIRIQTQEQALDYIGGRGRAIFRMGR  284

Query  59   YRRTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGN  118
             R   I+ A E +   ++ H+    ++   KA ++ +M RR+L+       VDDRD+LGN
Sbjct  285  PREPRIKYAEEILQKEVLPHLGTYELDETKKAYFIGYMIRRLLLLALGRREVDDRDHLGN  344

Query  119  KRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEQFDAWTVMSMHSNHITQ  175
            KRL LAG LLA LF  LFKK   D++  + KVL   +     D    + +++  IT 
Sbjct  345  KRLRLAGPLLASLFRVLFKKLVRDVRERLQKVLGSPD-----DLMLQLLVNAKPITS  396


>CDD:428012 pfam04566, RNA_pol_Rpb2_4, RNA polymerase Rpb2, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 4, is also known as the external 
2 domain.
Length=62

 Score = 108 bits (272),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  303  INGTPIALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQCAVHIATDDGRICRPLIVVE  362
            +NG  I + R P+  +   R+LRR G+ISE VSI  +  +  V I TD GR+CRPLI+VE
Sbjct  3    LNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE  62


>CDD:428011 pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 3, s also known as the fork domain 
and is proximal to catalytic site.
Length=67

 Score = 82.6 bits (205),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 27/66 (41%), Positives = 39/66 (59%), Gaps = 3/66 (5%)

Query  201  VLSRLSYIAALGMMTRISS---QFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKN  257
            VL R +Y++ L  + R++S      +  K +  R L PS +G +CP +TPEG  CGLVK+
Sbjct  2    VLDRTNYLSTLSHLRRVNSPRGGLFREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKH  61

Query  258  LALMTH  263
            LAL   
Sbjct  62   LALYAR  67


>CDD:398318 pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Rpb2 is the second largest subunit of the 
RNA polymerase. This domain forms one of the two distinctive 
lobes of the Rpb2 structure. This domain is also known as 
the lobe domain. DNA has been demonstrated to bind to the concave 
surface of the lobe domain, and plays a role in maintaining 
the transcription bubble. Many of the bacterial members 
contain large insertions within this domain, as region known 
as dispensable region 1 (DRI).
Length=185

 Score = 79.7 bits (197),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 34/126 (27%), Positives = 58/126 (46%), Gaps = 5/126 (4%)

Query  1    MGIHTEQEMLLLVAGVDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSSYR  60
            +G+ +++E+L  +    +  Q    +  E      IYTQ++ALD+IG    + R+    R
Sbjct  61   LGLVSDREILDRLCYDFNDPQMLELLKPELEEAENIYTQEEALDYIGKGFAL-RRGEEPR  119

Query  61   RTHIQEAVEAIAS--VIISHI--EVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYL  116
                +E + +      +  H+       N R KA  + +M  R+L  K      DD D+L
Sbjct  120  LQRAREILYSRDPKYNLNKHLGLNEPFENERLKAQDILYMIDRLLNLKLGRRKPDDIDHL  179

Query  117  GNKRLE  122
            GNKR+ 
Sbjct  180  GNKRVR  185


>CDD:428013 pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 5, is also known as the external 
2 domain.
Length=53

 Score = 66.4 bits (163),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 19/53 (36%), Positives = 27/53 (51%), Gaps = 12/53 (23%)

Query  383  FDDFLAQGLVEYLDVNEENDSLIALYEKDI------------TDTTTHLEIEP  423
            + D L +G++EYLD  EE  S+IA+  +D+              T TH EI P
Sbjct  1    WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESSREEREGPYAHTYTHCEIHP  53



Lambda      K        H        a         alpha
   0.321    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1152717742


Query= TCONS_00006543

Length=898
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459854 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain...  517     2e-178
CDD:461355 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain...  142     8e-41 
CDD:367994 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit...  150     6e-40 
CDD:428012 pfam04566, RNA_pol_Rpb2_4, RNA polymerase Rpb2, domain...  108     6e-29 
CDD:428011 pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, domain...  82.6    6e-20 
CDD:398318 pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, domain...  79.7    1e-17 
CDD:428013 pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, domain...  66.4    2e-14 


>CDD:459854 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain 6.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain represents the hybrid binding 
domain and the wall domain. The hybrid binding domain binds 
the nascent RNA strand / template DNA strand in the Pol II 
transcription elongation complex. This domain contains the 
important structural motifs, switch 3 and the flap loop and 
binds an active site metal ion. This domain is also involved 
in binding to Rpb1 and Rpb3. Many of the bacterial members 
contain large insertions within this domain, as region known 
as dispensable region 2 (DRII).
Length=371

 Score = 517 bits (1335),  Expect = 2e-178, Method: Composition-based stats.
 Identities = 173/379 (46%), Positives = 231/379 (61%), Gaps = 15/379 (4%)

Query  430  VAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIEL  489
            VA LIP+  HNQSPRNTYQCAMGKQA+G    N+F R D   Y++ YPQKP+VK+  +E 
Sbjct  1    VASLIPFVDHNQSPRNTYQCAMGKQAMGIYTLNKFYRSDQNTYVLCYPQKPLVKTGAVEA  60

Query  490  VKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTK  549
              + +LP GQNA+VAVMSY+GY+ EDA+++NK SVDRGF      ++     +    G  
Sbjct  61   GGFGELPLGQNAIVAVMSYTGYNQEDAIIINKSSVDRGFFTSIHIKEIEA--RKTKLGPI  118

Query  550  DRL--NPPTYENGAPIRKHALLEADGLAAVGEQVNAGEVYINKSTPEQSN--LSGIGSDA  605
            + +  + P             L+ DG+  VG +V  G++ + K  P +    L  I  + 
Sbjct  119  EEITRDIP----NVSEEALKKLDEDGIVRVGAEVKPGDILVGKVGPTELTKLLRAIFGEK  174

Query  606  GRPVQYTPTPMTYKLHDPAYIDKVM-YSVQENENQLVKVLVRQTRRPEVGDKFSSRHGQK  664
             R      T +     +   +D V+ + +     ++VKV +RQ R+PEVGDKF+SRHGQK
Sbjct  175  AR--DVKDTSLKVPPGEEGVVDDVIVFELPPGGIKMVKVYIRQKRKPEVGDKFASRHGQK  232

Query  665  GVVGIIADQVDMPFTDSGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGHHGYGTCF  724
            GVV  I  Q DMPFT+ GI PDII+NPHG PSRMT+G++LE   GKA  L G     T F
Sbjct  233  GVVSRILPQEDMPFTEDGIPPDIILNPHGVPSRMTIGQLLETHLGKAAALLGVFVDATPF  292

Query  725  GG--TPVEEASRVLIDHGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHS  782
             G  T VE+   +L   G++Y GK+ L  G TGE     +F GPIYYQKLKHMV DK+H+
Sbjct  293  DGASTEVEDIGELLEKAGYNYYGKEVLYDGRTGEPFEAPIFVGPIYYQKLKHMVDDKIHA  352

Query  783  RARGPRAILTRQPTEGRSR  801
            R+ GP ++LTRQP  GR+R
Sbjct  353  RSTGPYSLLTRQPLGGRAR  371


>CDD:461355 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain 7.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Rpb2 is the second largest subunit of the 
RNA polymerase. This domain comprised of the structural domains 
anchor and clamp. The clamp region (C-terminal) contains 
a zinc-binding motif. The clamp region is named due to its 
interaction with the clamp domain found in Rpb1. The domain 
also contains a region termed "switch 4". The switches within 
the polymerase are thought to signal different stages of 
transcription.
Length=87

 Score = 142 bits (361),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 52/87 (60%), Gaps = 0/87 (0%)

Query  803  GGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVV  862
            GGLR GEMER  LIAYG +  L ERL I SD +E+DVC +CG     N C  CK    + 
Sbjct  1    GGLRFGEMERWALIAYGAAHTLQERLTIKSDAYEVDVCGRCGLYAAYNKCPICKGETDIS  60

Query  863  KMTIPYAAKLLIQELMSMNVTARLKLD  889
               IP + KLL QEL S+ +  RL L+
Sbjct  61   PGYIPESFKLLFQELQSLGIDPRLLLE  87


>CDD:367994 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to three 
in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain forms one of the two distinctive 
lobes of the Rpb2 structure. This domain is also known as 
the protrusion domain. The other lobe (pfam04561) is nested 
within this domain.
Length=396

 Score = 150 bits (381),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 7/177 (4%)

Query  1    MGIHTEQEMLLLVAG--VDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSS  58
            +G  +++E+  L+     D   Q++   + EE  K+ I TQ+QALD+IG R +   +   
Sbjct  225  LGFTSDREIFELICYDVNDQQLQEELLPSLEEGFKIRIQTQEQALDYIGGRGRAIFRMGR  284

Query  59   YRRTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGN  118
             R   I+ A E +   ++ H+    ++   KA ++ +M RR+L+       VDDRD+LGN
Sbjct  285  PREPRIKYAEEILQKEVLPHLGTYELDETKKAYFIGYMIRRLLLLALGRREVDDRDHLGN  344

Query  119  KRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEQFDAWTVMSMHSNHITQ  175
            KRL LAG LLA LF  LFKK   D++  + KVL   +     D    + +++  IT 
Sbjct  345  KRLRLAGPLLASLFRVLFKKLVRDVRERLQKVLGSPD-----DLMLQLLVNAKPITS  396


>CDD:428012 pfam04566, RNA_pol_Rpb2_4, RNA polymerase Rpb2, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 4, is also known as the external 
2 domain.
Length=62

 Score = 108 bits (272),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  303  INGTPIALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQCAVHIATDDGRICRPLIVVE  362
            +NG  I + R P+  +   R+LRR G+ISE VSI  +  +  V I TD GR+CRPLI+VE
Sbjct  3    LNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE  62


>CDD:428011 pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 3, s also known as the fork domain 
and is proximal to catalytic site.
Length=67

 Score = 82.6 bits (205),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 27/66 (41%), Positives = 39/66 (59%), Gaps = 3/66 (5%)

Query  201  VLSRLSYIAALGMMTRISS---QFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKN  257
            VL R +Y++ L  + R++S      +  K +  R L PS +G +CP +TPEG  CGLVK+
Sbjct  2    VLDRTNYLSTLSHLRRVNSPRGGLFREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKH  61

Query  258  LALMTH  263
            LAL   
Sbjct  62   LALYAR  67


>CDD:398318 pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Rpb2 is the second largest subunit of the 
RNA polymerase. This domain forms one of the two distinctive 
lobes of the Rpb2 structure. This domain is also known as 
the lobe domain. DNA has been demonstrated to bind to the concave 
surface of the lobe domain, and plays a role in maintaining 
the transcription bubble. Many of the bacterial members 
contain large insertions within this domain, as region known 
as dispensable region 1 (DRI).
Length=185

 Score = 79.7 bits (197),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 34/126 (27%), Positives = 58/126 (46%), Gaps = 5/126 (4%)

Query  1    MGIHTEQEMLLLVAGVDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSSYR  60
            +G+ +++E+L  +    +  Q    +  E      IYTQ++ALD+IG    + R+    R
Sbjct  61   LGLVSDREILDRLCYDFNDPQMLELLKPELEEAENIYTQEEALDYIGKGFAL-RRGEEPR  119

Query  61   RTHIQEAVEAIAS--VIISHI--EVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYL  116
                +E + +      +  H+       N R KA  + +M  R+L  K      DD D+L
Sbjct  120  LQRAREILYSRDPKYNLNKHLGLNEPFENERLKAQDILYMIDRLLNLKLGRRKPDDIDHL  179

Query  117  GNKRLE  122
            GNKR+ 
Sbjct  180  GNKRVR  185


>CDD:428013 pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 5, is also known as the external 
2 domain.
Length=53

 Score = 66.4 bits (163),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 19/53 (36%), Positives = 27/53 (51%), Gaps = 12/53 (23%)

Query  383  FDDFLAQGLVEYLDVNEENDSLIALYEKDI------------TDTTTHLEIEP  423
            + D L +G++EYLD  EE  S+IA+  +D+              T TH EI P
Sbjct  1    WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESSREEREGPYAHTYTHCEIHP  53



Lambda      K        H        a         alpha
   0.321    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1152717742


Query= TCONS_00000312

Length=898
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459854 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain...  517     2e-178
CDD:461355 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain...  142     8e-41 
CDD:367994 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit...  150     6e-40 
CDD:428012 pfam04566, RNA_pol_Rpb2_4, RNA polymerase Rpb2, domain...  108     6e-29 
CDD:428011 pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, domain...  82.6    6e-20 
CDD:398318 pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, domain...  79.7    1e-17 
CDD:428013 pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, domain...  66.4    2e-14 


>CDD:459854 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain 6.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain represents the hybrid binding 
domain and the wall domain. The hybrid binding domain binds 
the nascent RNA strand / template DNA strand in the Pol II 
transcription elongation complex. This domain contains the 
important structural motifs, switch 3 and the flap loop and 
binds an active site metal ion. This domain is also involved 
in binding to Rpb1 and Rpb3. Many of the bacterial members 
contain large insertions within this domain, as region known 
as dispensable region 2 (DRII).
Length=371

 Score = 517 bits (1335),  Expect = 2e-178, Method: Composition-based stats.
 Identities = 173/379 (46%), Positives = 231/379 (61%), Gaps = 15/379 (4%)

Query  430  VAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIEL  489
            VA LIP+  HNQSPRNTYQCAMGKQA+G    N+F R D   Y++ YPQKP+VK+  +E 
Sbjct  1    VASLIPFVDHNQSPRNTYQCAMGKQAMGIYTLNKFYRSDQNTYVLCYPQKPLVKTGAVEA  60

Query  490  VKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTK  549
              + +LP GQNA+VAVMSY+GY+ EDA+++NK SVDRGF      ++     +    G  
Sbjct  61   GGFGELPLGQNAIVAVMSYTGYNQEDAIIINKSSVDRGFFTSIHIKEIEA--RKTKLGPI  118

Query  550  DRL--NPPTYENGAPIRKHALLEADGLAAVGEQVNAGEVYINKSTPEQSN--LSGIGSDA  605
            + +  + P             L+ DG+  VG +V  G++ + K  P +    L  I  + 
Sbjct  119  EEITRDIP----NVSEEALKKLDEDGIVRVGAEVKPGDILVGKVGPTELTKLLRAIFGEK  174

Query  606  GRPVQYTPTPMTYKLHDPAYIDKVM-YSVQENENQLVKVLVRQTRRPEVGDKFSSRHGQK  664
             R      T +     +   +D V+ + +     ++VKV +RQ R+PEVGDKF+SRHGQK
Sbjct  175  AR--DVKDTSLKVPPGEEGVVDDVIVFELPPGGIKMVKVYIRQKRKPEVGDKFASRHGQK  232

Query  665  GVVGIIADQVDMPFTDSGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGHHGYGTCF  724
            GVV  I  Q DMPFT+ GI PDII+NPHG PSRMT+G++LE   GKA  L G     T F
Sbjct  233  GVVSRILPQEDMPFTEDGIPPDIILNPHGVPSRMTIGQLLETHLGKAAALLGVFVDATPF  292

Query  725  GG--TPVEEASRVLIDHGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHS  782
             G  T VE+   +L   G++Y GK+ L  G TGE     +F GPIYYQKLKHMV DK+H+
Sbjct  293  DGASTEVEDIGELLEKAGYNYYGKEVLYDGRTGEPFEAPIFVGPIYYQKLKHMVDDKIHA  352

Query  783  RARGPRAILTRQPTEGRSR  801
            R+ GP ++LTRQP  GR+R
Sbjct  353  RSTGPYSLLTRQPLGGRAR  371


>CDD:461355 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain 7.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Rpb2 is the second largest subunit of the 
RNA polymerase. This domain comprised of the structural domains 
anchor and clamp. The clamp region (C-terminal) contains 
a zinc-binding motif. The clamp region is named due to its 
interaction with the clamp domain found in Rpb1. The domain 
also contains a region termed "switch 4". The switches within 
the polymerase are thought to signal different stages of 
transcription.
Length=87

 Score = 142 bits (361),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 52/87 (60%), Gaps = 0/87 (0%)

Query  803  GGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVV  862
            GGLR GEMER  LIAYG +  L ERL I SD +E+DVC +CG     N C  CK    + 
Sbjct  1    GGLRFGEMERWALIAYGAAHTLQERLTIKSDAYEVDVCGRCGLYAAYNKCPICKGETDIS  60

Query  863  KMTIPYAAKLLIQELMSMNVTARLKLD  889
               IP + KLL QEL S+ +  RL L+
Sbjct  61   PGYIPESFKLLFQELQSLGIDPRLLLE  87


>CDD:367994 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to three 
in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain forms one of the two distinctive 
lobes of the Rpb2 structure. This domain is also known as 
the protrusion domain. The other lobe (pfam04561) is nested 
within this domain.
Length=396

 Score = 150 bits (381),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 7/177 (4%)

Query  1    MGIHTEQEMLLLVAG--VDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSS  58
            +G  +++E+  L+     D   Q++   + EE  K+ I TQ+QALD+IG R +   +   
Sbjct  225  LGFTSDREIFELICYDVNDQQLQEELLPSLEEGFKIRIQTQEQALDYIGGRGRAIFRMGR  284

Query  59   YRRTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGN  118
             R   I+ A E +   ++ H+    ++   KA ++ +M RR+L+       VDDRD+LGN
Sbjct  285  PREPRIKYAEEILQKEVLPHLGTYELDETKKAYFIGYMIRRLLLLALGRREVDDRDHLGN  344

Query  119  KRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEQFDAWTVMSMHSNHITQ  175
            KRL LAG LLA LF  LFKK   D++  + KVL   +     D    + +++  IT 
Sbjct  345  KRLRLAGPLLASLFRVLFKKLVRDVRERLQKVLGSPD-----DLMLQLLVNAKPITS  396


>CDD:428012 pfam04566, RNA_pol_Rpb2_4, RNA polymerase Rpb2, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 4, is also known as the external 
2 domain.
Length=62

 Score = 108 bits (272),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  303  INGTPIALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQCAVHIATDDGRICRPLIVVE  362
            +NG  I + R P+  +   R+LRR G+ISE VSI  +  +  V I TD GR+CRPLI+VE
Sbjct  3    LNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE  62


>CDD:428011 pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 3, s also known as the fork domain 
and is proximal to catalytic site.
Length=67

 Score = 82.6 bits (205),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 27/66 (41%), Positives = 39/66 (59%), Gaps = 3/66 (5%)

Query  201  VLSRLSYIAALGMMTRISS---QFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKN  257
            VL R +Y++ L  + R++S      +  K +  R L PS +G +CP +TPEG  CGLVK+
Sbjct  2    VLDRTNYLSTLSHLRRVNSPRGGLFREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKH  61

Query  258  LALMTH  263
            LAL   
Sbjct  62   LALYAR  67


>CDD:398318 pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Rpb2 is the second largest subunit of the 
RNA polymerase. This domain forms one of the two distinctive 
lobes of the Rpb2 structure. This domain is also known as 
the lobe domain. DNA has been demonstrated to bind to the concave 
surface of the lobe domain, and plays a role in maintaining 
the transcription bubble. Many of the bacterial members 
contain large insertions within this domain, as region known 
as dispensable region 1 (DRI).
Length=185

 Score = 79.7 bits (197),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 34/126 (27%), Positives = 58/126 (46%), Gaps = 5/126 (4%)

Query  1    MGIHTEQEMLLLVAGVDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSSYR  60
            +G+ +++E+L  +    +  Q    +  E      IYTQ++ALD+IG    + R+    R
Sbjct  61   LGLVSDREILDRLCYDFNDPQMLELLKPELEEAENIYTQEEALDYIGKGFAL-RRGEEPR  119

Query  61   RTHIQEAVEAIAS--VIISHI--EVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYL  116
                +E + +      +  H+       N R KA  + +M  R+L  K      DD D+L
Sbjct  120  LQRAREILYSRDPKYNLNKHLGLNEPFENERLKAQDILYMIDRLLNLKLGRRKPDDIDHL  179

Query  117  GNKRLE  122
            GNKR+ 
Sbjct  180  GNKRVR  185


>CDD:428013 pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 5, is also known as the external 
2 domain.
Length=53

 Score = 66.4 bits (163),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 19/53 (36%), Positives = 27/53 (51%), Gaps = 12/53 (23%)

Query  383  FDDFLAQGLVEYLDVNEENDSLIALYEKDI------------TDTTTHLEIEP  423
            + D L +G++EYLD  EE  S+IA+  +D+              T TH EI P
Sbjct  1    WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESSREEREGPYAHTYTHCEIHP  53



Lambda      K        H        a         alpha
   0.321    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1152717742


Query= TCONS_00006544

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460828 pfam03152, UFD1, Ubiquitin fusion degradation protein ...  188     1e-60


>CDD:460828 pfam03152, UFD1, Ubiquitin fusion degradation protein UFD1.  
Post-translational ubiquitin-protein conjugates are recognized 
for degradation by the ubiquitin fusion degradation (UFD) 
pathway. Several proteins involved in this pathway have been 
identified. This family includes UFD1, a 40kD protein that 
is essential for vegetative cell viability. The human UFD1 
gene is expressed at high levels during embryogenesis, especially 
in the eyes and in the inner ear primordia and is thought 
to be important in the determination of ectoderm-derived 
structures, including neural crest cells. In addition, this 
gene is deleted in the CATCH-22 (cardiac defects, abnormal 
facies, thymic hypoplasia, cleft palate and hypocalcaemia with 
deletions on chromosome 22) syndrome. This clinical syndrome 
is associated with a variety of developmental defects, all 
characterized by microdeletions on 22q11.2. Two such developmental 
defects are the DiGeorge syndrome OMIM:188400, and 
the velo-cardio- facial syndrome OMIM:145410. Several of the 
abnormalities associated with these conditions are thought 
to be due to defective neural crest cell differentiation.
Length=174

 Score = 188 bits (481),  Expect = 1e-60, Method: Composition-based stats.
 Identities = 66/97 (68%), Positives = 77/97 (79%), Gaps = 3/97 (3%)

Query  1    MQTLLLEPGDLVQVKSTDLPPGQFIKLQAQSTSFLDISDPKAVLENAFRNFSCLTKGDVF  60
            MQ L L+ GDLVQ+KS  LP G F+KLQ QST FLDIS+PKAVLENA RNFS LTKGD+ 
Sbjct  81   MQNLGLQEGDLVQIKSASLPKGTFVKLQPQSTDFLDISNPKAVLENALRNFSTLTKGDII  140

Query  61   TFAYNDQVYEMAVLETKPSNNTNAVSVLETDLEVDFA  97
               YND++YE+ VLE KPS   NA+S++ETDLEVDFA
Sbjct  141  AINYNDKIYELDVLEVKPS---NAISIIETDLEVDFA  174



Lambda      K        H        a         alpha
   0.310    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00000313

Length=898
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459854 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain...  517     2e-178
CDD:461355 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain...  142     8e-41 
CDD:367994 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit...  150     6e-40 
CDD:428012 pfam04566, RNA_pol_Rpb2_4, RNA polymerase Rpb2, domain...  108     6e-29 
CDD:428011 pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, domain...  82.6    6e-20 
CDD:398318 pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, domain...  79.7    1e-17 
CDD:428013 pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, domain...  66.4    2e-14 


>CDD:459854 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain 6.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain represents the hybrid binding 
domain and the wall domain. The hybrid binding domain binds 
the nascent RNA strand / template DNA strand in the Pol II 
transcription elongation complex. This domain contains the 
important structural motifs, switch 3 and the flap loop and 
binds an active site metal ion. This domain is also involved 
in binding to Rpb1 and Rpb3. Many of the bacterial members 
contain large insertions within this domain, as region known 
as dispensable region 2 (DRII).
Length=371

 Score = 517 bits (1335),  Expect = 2e-178, Method: Composition-based stats.
 Identities = 173/379 (46%), Positives = 231/379 (61%), Gaps = 15/379 (4%)

Query  430  VAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIEL  489
            VA LIP+  HNQSPRNTYQCAMGKQA+G    N+F R D   Y++ YPQKP+VK+  +E 
Sbjct  1    VASLIPFVDHNQSPRNTYQCAMGKQAMGIYTLNKFYRSDQNTYVLCYPQKPLVKTGAVEA  60

Query  490  VKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTK  549
              + +LP GQNA+VAVMSY+GY+ EDA+++NK SVDRGF      ++     +    G  
Sbjct  61   GGFGELPLGQNAIVAVMSYTGYNQEDAIIINKSSVDRGFFTSIHIKEIEA--RKTKLGPI  118

Query  550  DRL--NPPTYENGAPIRKHALLEADGLAAVGEQVNAGEVYINKSTPEQSN--LSGIGSDA  605
            + +  + P             L+ DG+  VG +V  G++ + K  P +    L  I  + 
Sbjct  119  EEITRDIP----NVSEEALKKLDEDGIVRVGAEVKPGDILVGKVGPTELTKLLRAIFGEK  174

Query  606  GRPVQYTPTPMTYKLHDPAYIDKVM-YSVQENENQLVKVLVRQTRRPEVGDKFSSRHGQK  664
             R      T +     +   +D V+ + +     ++VKV +RQ R+PEVGDKF+SRHGQK
Sbjct  175  AR--DVKDTSLKVPPGEEGVVDDVIVFELPPGGIKMVKVYIRQKRKPEVGDKFASRHGQK  232

Query  665  GVVGIIADQVDMPFTDSGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGHHGYGTCF  724
            GVV  I  Q DMPFT+ GI PDII+NPHG PSRMT+G++LE   GKA  L G     T F
Sbjct  233  GVVSRILPQEDMPFTEDGIPPDIILNPHGVPSRMTIGQLLETHLGKAAALLGVFVDATPF  292

Query  725  GG--TPVEEASRVLIDHGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHS  782
             G  T VE+   +L   G++Y GK+ L  G TGE     +F GPIYYQKLKHMV DK+H+
Sbjct  293  DGASTEVEDIGELLEKAGYNYYGKEVLYDGRTGEPFEAPIFVGPIYYQKLKHMVDDKIHA  352

Query  783  RARGPRAILTRQPTEGRSR  801
            R+ GP ++LTRQP  GR+R
Sbjct  353  RSTGPYSLLTRQPLGGRAR  371


>CDD:461355 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain 7.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Rpb2 is the second largest subunit of the 
RNA polymerase. This domain comprised of the structural domains 
anchor and clamp. The clamp region (C-terminal) contains 
a zinc-binding motif. The clamp region is named due to its 
interaction with the clamp domain found in Rpb1. The domain 
also contains a region termed "switch 4". The switches within 
the polymerase are thought to signal different stages of 
transcription.
Length=87

 Score = 142 bits (361),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 52/87 (60%), Gaps = 0/87 (0%)

Query  803  GGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVV  862
            GGLR GEMER  LIAYG +  L ERL I SD +E+DVC +CG     N C  CK    + 
Sbjct  1    GGLRFGEMERWALIAYGAAHTLQERLTIKSDAYEVDVCGRCGLYAAYNKCPICKGETDIS  60

Query  863  KMTIPYAAKLLIQELMSMNVTARLKLD  889
               IP + KLL QEL S+ +  RL L+
Sbjct  61   PGYIPESFKLLFQELQSLGIDPRLLLE  87


>CDD:367994 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to three 
in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain forms one of the two distinctive 
lobes of the Rpb2 structure. This domain is also known as 
the protrusion domain. The other lobe (pfam04561) is nested 
within this domain.
Length=396

 Score = 150 bits (381),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 7/177 (4%)

Query  1    MGIHTEQEMLLLVAG--VDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSS  58
            +G  +++E+  L+     D   Q++   + EE  K+ I TQ+QALD+IG R +   +   
Sbjct  225  LGFTSDREIFELICYDVNDQQLQEELLPSLEEGFKIRIQTQEQALDYIGGRGRAIFRMGR  284

Query  59   YRRTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGN  118
             R   I+ A E +   ++ H+    ++   KA ++ +M RR+L+       VDDRD+LGN
Sbjct  285  PREPRIKYAEEILQKEVLPHLGTYELDETKKAYFIGYMIRRLLLLALGRREVDDRDHLGN  344

Query  119  KRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEQFDAWTVMSMHSNHITQ  175
            KRL LAG LLA LF  LFKK   D++  + KVL   +     D    + +++  IT 
Sbjct  345  KRLRLAGPLLASLFRVLFKKLVRDVRERLQKVLGSPD-----DLMLQLLVNAKPITS  396


>CDD:428012 pfam04566, RNA_pol_Rpb2_4, RNA polymerase Rpb2, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 4, is also known as the external 
2 domain.
Length=62

 Score = 108 bits (272),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  303  INGTPIALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQCAVHIATDDGRICRPLIVVE  362
            +NG  I + R P+  +   R+LRR G+ISE VSI  +  +  V I TD GR+CRPLI+VE
Sbjct  3    LNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE  62


>CDD:428011 pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 3, s also known as the fork domain 
and is proximal to catalytic site.
Length=67

 Score = 82.6 bits (205),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 27/66 (41%), Positives = 39/66 (59%), Gaps = 3/66 (5%)

Query  201  VLSRLSYIAALGMMTRISS---QFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKN  257
            VL R +Y++ L  + R++S      +  K +  R L PS +G +CP +TPEG  CGLVK+
Sbjct  2    VLDRTNYLSTLSHLRRVNSPRGGLFREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKH  61

Query  258  LALMTH  263
            LAL   
Sbjct  62   LALYAR  67


>CDD:398318 pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Rpb2 is the second largest subunit of the 
RNA polymerase. This domain forms one of the two distinctive 
lobes of the Rpb2 structure. This domain is also known as 
the lobe domain. DNA has been demonstrated to bind to the concave 
surface of the lobe domain, and plays a role in maintaining 
the transcription bubble. Many of the bacterial members 
contain large insertions within this domain, as region known 
as dispensable region 1 (DRI).
Length=185

 Score = 79.7 bits (197),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 34/126 (27%), Positives = 58/126 (46%), Gaps = 5/126 (4%)

Query  1    MGIHTEQEMLLLVAGVDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSSYR  60
            +G+ +++E+L  +    +  Q    +  E      IYTQ++ALD+IG    + R+    R
Sbjct  61   LGLVSDREILDRLCYDFNDPQMLELLKPELEEAENIYTQEEALDYIGKGFAL-RRGEEPR  119

Query  61   RTHIQEAVEAIAS--VIISHI--EVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYL  116
                +E + +      +  H+       N R KA  + +M  R+L  K      DD D+L
Sbjct  120  LQRAREILYSRDPKYNLNKHLGLNEPFENERLKAQDILYMIDRLLNLKLGRRKPDDIDHL  179

Query  117  GNKRLE  122
            GNKR+ 
Sbjct  180  GNKRVR  185


>CDD:428013 pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 5, is also known as the external 
2 domain.
Length=53

 Score = 66.4 bits (163),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 19/53 (36%), Positives = 27/53 (51%), Gaps = 12/53 (23%)

Query  383  FDDFLAQGLVEYLDVNEENDSLIALYEKDI------------TDTTTHLEIEP  423
            + D L +G++EYLD  EE  S+IA+  +D+              T TH EI P
Sbjct  1    WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESSREEREGPYAHTYTHCEIHP  53



Lambda      K        H        a         alpha
   0.321    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1152717742


Query= TCONS_00000314

Length=898
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459854 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain...  517     2e-178
CDD:461355 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain...  142     8e-41 
CDD:367994 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit...  150     6e-40 
CDD:428012 pfam04566, RNA_pol_Rpb2_4, RNA polymerase Rpb2, domain...  108     6e-29 
CDD:428011 pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, domain...  82.6    6e-20 
CDD:398318 pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, domain...  79.7    1e-17 
CDD:428013 pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, domain...  66.4    2e-14 


>CDD:459854 pfam00562, RNA_pol_Rpb2_6, RNA polymerase Rpb2, domain 6.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain represents the hybrid binding 
domain and the wall domain. The hybrid binding domain binds 
the nascent RNA strand / template DNA strand in the Pol II 
transcription elongation complex. This domain contains the 
important structural motifs, switch 3 and the flap loop and 
binds an active site metal ion. This domain is also involved 
in binding to Rpb1 and Rpb3. Many of the bacterial members 
contain large insertions within this domain, as region known 
as dispensable region 2 (DRII).
Length=371

 Score = 517 bits (1335),  Expect = 2e-178, Method: Composition-based stats.
 Identities = 173/379 (46%), Positives = 231/379 (61%), Gaps = 15/379 (4%)

Query  430  VAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIEL  489
            VA LIP+  HNQSPRNTYQCAMGKQA+G    N+F R D   Y++ YPQKP+VK+  +E 
Sbjct  1    VASLIPFVDHNQSPRNTYQCAMGKQAMGIYTLNKFYRSDQNTYVLCYPQKPLVKTGAVEA  60

Query  490  VKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTK  549
              + +LP GQNA+VAVMSY+GY+ EDA+++NK SVDRGF      ++     +    G  
Sbjct  61   GGFGELPLGQNAIVAVMSYTGYNQEDAIIINKSSVDRGFFTSIHIKEIEA--RKTKLGPI  118

Query  550  DRL--NPPTYENGAPIRKHALLEADGLAAVGEQVNAGEVYINKSTPEQSN--LSGIGSDA  605
            + +  + P             L+ DG+  VG +V  G++ + K  P +    L  I  + 
Sbjct  119  EEITRDIP----NVSEEALKKLDEDGIVRVGAEVKPGDILVGKVGPTELTKLLRAIFGEK  174

Query  606  GRPVQYTPTPMTYKLHDPAYIDKVM-YSVQENENQLVKVLVRQTRRPEVGDKFSSRHGQK  664
             R      T +     +   +D V+ + +     ++VKV +RQ R+PEVGDKF+SRHGQK
Sbjct  175  AR--DVKDTSLKVPPGEEGVVDDVIVFELPPGGIKMVKVYIRQKRKPEVGDKFASRHGQK  232

Query  665  GVVGIIADQVDMPFTDSGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGHHGYGTCF  724
            GVV  I  Q DMPFT+ GI PDII+NPHG PSRMT+G++LE   GKA  L G     T F
Sbjct  233  GVVSRILPQEDMPFTEDGIPPDIILNPHGVPSRMTIGQLLETHLGKAAALLGVFVDATPF  292

Query  725  GG--TPVEEASRVLIDHGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHS  782
             G  T VE+   +L   G++Y GK+ L  G TGE     +F GPIYYQKLKHMV DK+H+
Sbjct  293  DGASTEVEDIGELLEKAGYNYYGKEVLYDGRTGEPFEAPIFVGPIYYQKLKHMVDDKIHA  352

Query  783  RARGPRAILTRQPTEGRSR  801
            R+ GP ++LTRQP  GR+R
Sbjct  353  RSTGPYSLLTRQPLGGRAR  371


>CDD:461355 pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain 7.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Rpb2 is the second largest subunit of the 
RNA polymerase. This domain comprised of the structural domains 
anchor and clamp. The clamp region (C-terminal) contains 
a zinc-binding motif. The clamp region is named due to its 
interaction with the clamp domain found in Rpb1. The domain 
also contains a region termed "switch 4". The switches within 
the polymerase are thought to signal different stages of 
transcription.
Length=87

 Score = 142 bits (361),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 52/87 (60%), Gaps = 0/87 (0%)

Query  803  GGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQCGFMGYLNWCQRCKSSRSVV  862
            GGLR GEMER  LIAYG +  L ERL I SD +E+DVC +CG     N C  CK    + 
Sbjct  1    GGLRFGEMERWALIAYGAAHTLQERLTIKSDAYEVDVCGRCGLYAAYNKCPICKGETDIS  60

Query  863  KMTIPYAAKLLIQELMSMNVTARLKLD  889
               IP + KLL QEL S+ +  RL L+
Sbjct  61   PGYIPESFKLLFQELQSLGIDPRLLLE  87


>CDD:367994 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to three 
in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain forms one of the two distinctive 
lobes of the Rpb2 structure. This domain is also known as 
the protrusion domain. The other lobe (pfam04561) is nested 
within this domain.
Length=396

 Score = 150 bits (381),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 7/177 (4%)

Query  1    MGIHTEQEMLLLVAG--VDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSS  58
            +G  +++E+  L+     D   Q++   + EE  K+ I TQ+QALD+IG R +   +   
Sbjct  225  LGFTSDREIFELICYDVNDQQLQEELLPSLEEGFKIRIQTQEQALDYIGGRGRAIFRMGR  284

Query  59   YRRTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGN  118
             R   I+ A E +   ++ H+    ++   KA ++ +M RR+L+       VDDRD+LGN
Sbjct  285  PREPRIKYAEEILQKEVLPHLGTYELDETKKAYFIGYMIRRLLLLALGRREVDDRDHLGN  344

Query  119  KRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEQFDAWTVMSMHSNHITQ  175
            KRL LAG LLA LF  LFKK   D++  + KVL   +     D    + +++  IT 
Sbjct  345  KRLRLAGPLLASLFRVLFKKLVRDVRERLQKVLGSPD-----DLMLQLLVNAKPITS  396


>CDD:428012 pfam04566, RNA_pol_Rpb2_4, RNA polymerase Rpb2, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 4, is also known as the external 
2 domain.
Length=62

 Score = 108 bits (272),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  303  INGTPIALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQCAVHIATDDGRICRPLIVVE  362
            +NG  I + R P+  +   R+LRR G+ISE VSI  +  +  V I TD GR+CRPLI+VE
Sbjct  3    LNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE  62


>CDD:428011 pfam04565, RNA_pol_Rpb2_3, RNA polymerase Rpb2, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 3, s also known as the fork domain 
and is proximal to catalytic site.
Length=67

 Score = 82.6 bits (205),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 27/66 (41%), Positives = 39/66 (59%), Gaps = 3/66 (5%)

Query  201  VLSRLSYIAALGMMTRISS---QFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKN  257
            VL R +Y++ L  + R++S      +  K +  R L PS +G +CP +TPEG  CGLVK+
Sbjct  2    VLDRTNYLSTLSHLRRVNSPRGGLFREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKH  61

Query  258  LALMTH  263
            LAL   
Sbjct  62   LALYAR  67


>CDD:398318 pfam04561, RNA_pol_Rpb2_2, RNA polymerase Rpb2, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Rpb2 is the second largest subunit of the 
RNA polymerase. This domain forms one of the two distinctive 
lobes of the Rpb2 structure. This domain is also known as 
the lobe domain. DNA has been demonstrated to bind to the concave 
surface of the lobe domain, and plays a role in maintaining 
the transcription bubble. Many of the bacterial members 
contain large insertions within this domain, as region known 
as dispensable region 1 (DRI).
Length=185

 Score = 79.7 bits (197),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 34/126 (27%), Positives = 58/126 (46%), Gaps = 5/126 (4%)

Query  1    MGIHTEQEMLLLVAGVDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSSYR  60
            +G+ +++E+L  +    +  Q    +  E      IYTQ++ALD+IG    + R+    R
Sbjct  61   LGLVSDREILDRLCYDFNDPQMLELLKPELEEAENIYTQEEALDYIGKGFAL-RRGEEPR  119

Query  61   RTHIQEAVEAIAS--VIISHI--EVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYL  116
                +E + +      +  H+       N R KA  + +M  R+L  K      DD D+L
Sbjct  120  LQRAREILYSRDPKYNLNKHLGLNEPFENERLKAQDILYMIDRLLNLKLGRRKPDDIDHL  179

Query  117  GNKRLE  122
            GNKR+ 
Sbjct  180  GNKRVR  185


>CDD:428013 pfam04567, RNA_pol_Rpb2_5, RNA polymerase Rpb2, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). Domain 5, is also known as the external 
2 domain.
Length=53

 Score = 66.4 bits (163),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 19/53 (36%), Positives = 27/53 (51%), Gaps = 12/53 (23%)

Query  383  FDDFLAQGLVEYLDVNEENDSLIALYEKDI------------TDTTTHLEIEP  423
            + D L +G++EYLD  EE  S+IA+  +D+              T TH EI P
Sbjct  1    WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESSREEREGPYAHTYTHCEIHP  53



Lambda      K        H        a         alpha
   0.321    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1152717742


Query= TCONS_00000315

Length=546


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0798    0.140     1.90     42.6     43.6 

Effective search space used: 688900030


Query= TCONS_00000317

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464224 pfam14630, ORC5_C, Origin recognition complex (ORC) su...  76.9    3e-19


>CDD:464224 pfam14630, ORC5_C, Origin recognition complex (ORC) subunit 5 
C-terminus.  This entry represents the C-terminus of origin 
recognition complex subunit 5.
Length=267

 Score = 76.9 bits (190),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 17/75 (23%)

Query  3    AVADAIYAELATLRRLRLVVPAAGRDSSSRMGASVGGSGSGNTTSDAGEKWCVNVSGDWI  62
             +   + +++ATL  LRL+V  +G D                   D G KW  NVS ++I
Sbjct  210  GLNVDVLSQIATLVSLRLLVRTSGAD-----------------PLDGGGKWRCNVSWEFI  252

Query  63   GEMAKGIGVEVGEWL  77
             E+A+ +G  + E+L
Sbjct  253  REIARSVGFPLEEYL  267



Lambda      K        H        a         alpha
   0.313    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00000316

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464224 pfam14630, ORC5_C, Origin recognition complex (ORC) su...  76.9    3e-19


>CDD:464224 pfam14630, ORC5_C, Origin recognition complex (ORC) subunit 5 
C-terminus.  This entry represents the C-terminus of origin 
recognition complex subunit 5.
Length=267

 Score = 76.9 bits (190),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 17/75 (23%)

Query  3    AVADAIYAELATLRRLRLVVPAAGRDSSSRMGASVGGSGSGNTTSDAGEKWCVNVSGDWI  62
             +   + +++ATL  LRL+V  +G D                   D G KW  NVS ++I
Sbjct  210  GLNVDVLSQIATLVSLRLLVRTSGAD-----------------PLDGGGKWRCNVSWEFI  252

Query  63   GEMAKGIGVEVGEWL  77
             E+A+ +G  + E+L
Sbjct  253  REIARSVGFPLEEYL  267



Lambda      K        H        a         alpha
   0.313    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00006546

Length=260


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00006545

Length=415


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00000318

Length=533


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00000319

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464224 pfam14630, ORC5_C, Origin recognition complex (ORC) su...  76.9    3e-19


>CDD:464224 pfam14630, ORC5_C, Origin recognition complex (ORC) subunit 5 
C-terminus.  This entry represents the C-terminus of origin 
recognition complex subunit 5.
Length=267

 Score = 76.9 bits (190),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 17/75 (23%)

Query  3    AVADAIYAELATLRRLRLVVPAAGRDSSSRMGASVGGSGSGNTTSDAGEKWCVNVSGDWI  62
             +   + +++ATL  LRL+V  +G D                   D G KW  NVS ++I
Sbjct  210  GLNVDVLSQIATLVSLRLLVRTSGAD-----------------PLDGGGKWRCNVSWEFI  252

Query  63   GEMAKGIGVEVGEWL  77
             E+A+ +G  + E+L
Sbjct  253  REIARSVGFPLEEYL  267



Lambda      K        H        a         alpha
   0.313    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00000320

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464224 pfam14630, ORC5_C, Origin recognition complex (ORC) su...  76.9    3e-19


>CDD:464224 pfam14630, ORC5_C, Origin recognition complex (ORC) subunit 5 
C-terminus.  This entry represents the C-terminus of origin 
recognition complex subunit 5.
Length=267

 Score = 76.9 bits (190),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 17/75 (23%)

Query  3    AVADAIYAELATLRRLRLVVPAAGRDSSSRMGASVGGSGSGNTTSDAGEKWCVNVSGDWI  62
             +   + +++ATL  LRL+V  +G D                   D G KW  NVS ++I
Sbjct  210  GLNVDVLSQIATLVSLRLLVRTSGAD-----------------PLDGGGKWRCNVSWEFI  252

Query  63   GEMAKGIGVEVGEWL  77
             E+A+ +G  + E+L
Sbjct  253  REIARSVGFPLEEYL  267



Lambda      K        H        a         alpha
   0.313    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00006547

Length=277


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00000321

Length=514


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00006548

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00000323

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00000322

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00000326

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00006549

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00006550

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00000324

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00006551

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00000325

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00000327

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.128    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00000328

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00000329

Length=134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         61.5    1e-12


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 61.5 bits (150),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 39/120 (33%), Positives = 52/120 (43%), Gaps = 11/120 (9%)

Query  20   GGLLFGMDTGVIGPVTVMDSFVSKFGS--------QSATVHGLIVSSILIPAAISSFFAG  71
            GG LFG DTGVIG    +  F   FG           + + GLIVS   +   I S FAG
Sbjct  8    GGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAG  67

Query  72   YLADKLGRPTGISIGALIFG---IGAAIEGAAARLAMFIVGRCIEGIGEGLYLGTLVVYV  128
             L D+ GR   + I  ++F    +          +   IVGR + GIG G       +Y+
Sbjct  68   KLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYI  127



Lambda      K        H        a         alpha
   0.327    0.144    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00000330

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         252     4e-79
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.9    6e-14


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 252 bits (646),  Expect = 4e-79, Method: Composition-based stats.
 Identities = 150/480 (31%), Positives = 220/480 (46%), Gaps = 49/480 (10%)

Query  22   GGLLFGMDTGVIGPVTVMDSFVSKFGS--------QSATVHGLIVSSILIPAAISSFFAG  73
            GG LFG DTGVIG    +  F   FG           + + GLIVS   +   I S FAG
Sbjct  8    GGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAG  67

Query  74   YLADKLGRPTGISIGALIF---GIGAAIEGAAARLAMFIVGRCIEGIGEGLYLGTLVVYI  130
             L D+ GR   + I  ++F    +          +   IVGR + GIG G       +YI
Sbjct  68   KLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYI  127

Query  131  CEISPTSVRGALATGPQLLITLGLVVGFFTCYGTARLESSFSWRTPYLILACLSVLFSAA  190
             EI+P  +RGAL +  QL IT G+++ +    G  +  +S  WR P  +    ++L    
Sbjct  128  SEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLII-  186

Query  191  SFLFLVP-SPRWLTLHGRHEEAARTW-DLLGVGHAEREKVEVEQTREARTQIQILPACPA  248
              L  +P SPRWL   GR EEA      L GV   +RE  E++ + EA            
Sbjct  187  -GLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEA------------  233

Query  249  TTLTPDLTPHTPAPPQRPLKLASHKLLDIFSKDVRARTALAVFLMGFQQLSGIDGVLYYA  308
                            +  + AS K L   +K  R R  + V L  FQQL+GI+ + YY+
Sbjct  234  ---------------GQEAEKASWKEL-FSTKTRRQRLLIGVMLQIFQQLTGINAIFYYS  277

Query  309  PLLFEQAGLTSSTATFFASGVSALVIFAVTIPGLLWADRWGRRHSIIAGGIGLSTTMFLI  368
              +FE  GL+ S   F  + +  +V F  T   +   DR+GRR  ++ G  G++    ++
Sbjct  278  TTIFENLGLSDS---FLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVIL  334

Query  369  GALYAADAVHPSSGPGRWLVIVAIYLFAVIFSLTWAICIKVYAAEIQPQRTRASATSLAH  428
            G    A      S     + IV I LF   F++ W     V  +E+ P   R+ A +LA 
Sbjct  335  GI--VALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALAT  392

Query  429  GSNWVTNFLVALTTPILLAKSS-FGAYFLFGGCTLLTALVCALFMPETKGKSLDEIEEAF  487
             +NW+ NFL+    PI+         +F+F G  +L  +    F+PETKG++L+EI+E F
Sbjct  393  AANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.9 bits (174),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 81/408 (20%), Positives = 140/408 (34%), Gaps = 77/408 (19%)

Query  20   SCGGLLFGMDTGVIGPVTVMDSFVSKFGSQSATVHGLIVSSILIPAAISSFFAGYLADKL  79
                 L  +   ++GP   +   +++    S T  GL+++   +  A++   AG L+D+ 
Sbjct  2    FLAAFLAALGRSLLGPA--LPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  80   GRPTGISIGALIFGIGAAIEGAAARLAMFIVGRCIEGIGEGLYLGTLVVYICEISPTSVR  139
            GR   + IG L+F +G  +   A+ L + +V R ++G+G G      +  I +  P   R
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  140  GALATGPQLLITLGLVVGFFTCYGTARLESSFSWRTPYLILACLSVLFSAASFLFLVPSP  199
            G           LG  +G         L S F WR  +LILA LS+L +    L   P  
Sbjct  120  GRALGLVSAGFGLGAALGPLL---GGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE  176

Query  200  RWLTLHGRHEEAARTWDLLGVGHAEREKVEVEQTREARTQIQILPACPATTLTPDLTPHT  259
                                                                        
Sbjct  177  SK----------------------------------------------------------  178

Query  260  PAPPQRPLKLASHKLLDIFSKDVRARTALAVFLMGFQQLSGIDGVLYYAPLLFEQAGLTS  319
               P    +L+         +D      LA+ L GF       G+L Y PL  E  GL++
Sbjct  179  RPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGF----AFFGLLTYLPLYQEVLGLSA  234

Query  320  STATFFASGVSALVIFAVTIPGLLWADRWGRRHSIIAGGIGLSTTMFLIGALYAADAVHP  379
              A     G+  L+     +     +DR GRR  ++   + L      +        +  
Sbjct  235  LLAGLL-LGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGL--------LLL  285

Query  380  SSGPGRWLVIVAIYLFAVIFSLTWAICIKVYAAEIQPQRTRASATSLA  427
            S       +++A+ L    F L +   +    +++ P+  R +A+ L 
Sbjct  286  SLTLSSLWLLLALLLLGFGFGLVFP-ALNALVSDLAPKEERGTASGLY  332



Lambda      K        H        a         alpha
   0.325    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00006553

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397858 pfam03953, Tubulin_C, Tubulin C-terminal domain. This ...  193     1e-63
CDD:459669 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain...  122     9e-35


>CDD:397858 pfam03953, Tubulin_C, Tubulin C-terminal domain.  This family 
includes the tubulin alpha, beta and gamma chains. Members 
of this family are involved in polymer formation. Tubulins are 
GTPases. FtsZ can polymerize into tubes, sheets, and rings 
in vitro and is ubiquitous in eubacteria and archaea. Tubulin 
is the major component of microtubules. (The FtsZ GTPases 
have been split into their won family).
Length=125

 Score = 193 bits (494),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 64/107 (60%), Positives = 78/107 (73%), Gaps = 0/107 (0%)

Query  172  PRIHFPLVAYAPVISAAKASHEANSVNEITSACFEPNNQMVKCDPRNGKYMATCLLYRGD  231
            PR+HF L +YAP+ SA KASHE  SV ++T   F+P NQMV CDPRNGKYMA  LLYRGD
Sbjct  1    PRLHFLLTSYAPLTSANKASHEKTSVLDVTRRLFDPKNQMVSCDPRNGKYMACALLYRGD  60

Query  232  VVPKETHAAVATLKTKRTIQFVDWCPTGFKIGICYQPPQQVPGGDLA  278
            V PK+ H A+  +K KR+ QFV+WCPTG K+ IC Q P  VPG  ++
Sbjct  61   VSPKDVHRAIQRIKEKRSAQFVEWCPTGIKVAICSQSPYVVPGSKVS  107


>CDD:459669 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain.  This 
family includes the tubulin alpha, beta and gamma chains, as 
well as the bacterial FtsZ family of proteins. Members of 
this family are involved in polymer formation. FtsZ is the polymer-forming 
protein of bacterial cell division. It is part 
of a ring in the middle of the dividing cell that is required 
for constriction of cell membrane and cell envelope to yield 
two daughter cells. FtsZ and tubulin are GTPases. FtsZ 
can polymerize into tubes, sheets, and rings in vitro and is 
ubiquitous in eubacteria and archaea. Tubulin is the major 
component of microtubules.
Length=190

 Score = 122 bits (308),  Expect = 9e-35, Method: Composition-based stats.
 Identities = 45/122 (37%), Positives = 69/122 (57%), Gaps = 1/122 (1%)

Query  1    MITGKEDASNNYARGHYTVGKEMIDQVLDKVRRVADNCAGLQGFLVFHSFGGGTGSGFGA  60
            ++ GKE    N A G+  +G+E  ++ L+++R+  + C  LQGF +  S GGGTGSG   
Sbjct  69   ILLGKEGTGGNGAGGYPEIGREAAEESLEEIRKEVEGCDMLQGFFITASLGGGTGSGAAP  128

Query  61   LLMERLSVDYGKKSKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYD  120
            ++ E L   Y     +    +P    +  VV PYN+IL     +EHSD   ++DN+A+YD
Sbjct  129  VIAEILKELYPGALTVAVVTFPF-GFSEGVVRPYNAILGLKELIEHSDSVIVIDNDALYD  187

Query  121  IC  122
            IC
Sbjct  188  IC  189



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00000331

Length=947
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  271     6e-84
CDD:430930 pfam09924, DUF2156, Uncharacterized conserved protein ...  61.9    9e-11


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 271 bits (695),  Expect = 6e-84, Method: Composition-based stats.
 Identities = 104/309 (34%), Positives = 150/309 (49%), Gaps = 26/309 (8%)

Query  264  TRLNNRILDLRTPTSQSIFRLQSALCNIFRSSLDEQGFIEIHTPKLQGSATESGASVFQV  323
            TRL  R LDLR P  Q+  +L+S +    R+ LDE GF+E+ TP L  SAT  GA  F V
Sbjct  4    TRLKYRYLDLRRPKMQANLKLRSKIIKAIRNFLDENGFLEVETPILTKSATPEGARDFLV  63

Query  324  --NYFGRDAFLAQSPQLAKQMAIAADFERVYEIGAVFRAENSNTHRHLTEYTGLDIEMAI  381
                 G+   L QSPQL KQ+ + A F+RV++I   FR E+  T R   E+T LD+EM+ 
Sbjct  64   PSRALGKFYALPQSPQLYKQLLMVAGFDRVFQIARCFRDEDLRTDRQP-EFTQLDLEMSF  122

Query  382  EEHYHEMLDVLDAVIKNMLKGVYGRYRREIEIVKHQFPSEDVVWLEETPIIR--FSDGIK  439
             + Y +++D+ + +IK + K V G  +                     P  R  +++ I+
Sbjct  123  VD-YEDVMDLTEELIKEIFKEVEGIAKELEGGTLLDLK---------KPFPRITYAEAIE  172

Query  440  MLNESGWRDEDGNPLPEDDDLHTRDEIRLGELVKEKYGTDYYILDKFPVAARPFYAMPDP  499
             LN     +               D   L ELV +K   +   +  FP    PF    D 
Sbjct  173  KLNGKDVEELG-------YGSDKPDLRFLLELVIDKNKFNPLWVTDFPAEHHPFTMPKDE  225

Query  500  EDPRFTNSFDIFIRGQEIVSGGQRIHDPRMLEESMRRSGINPDTM----EDYLEGFRWGA  555
            +DP    +FD+ + G EI  G  RIHDP + EE     G++P+        YL+  ++GA
Sbjct  226  DDPALAEAFDLVLNGVEIGGGSIRIHDPELQEERFEEQGLDPEEAEEKFGFYLDALKYGA  285

Query  556  PPHAGAGVG  564
            PPH G G+G
Sbjct  286  PPHGGLGIG  294


>CDD:430930 pfam09924, DUF2156, Uncharacterized conserved protein (DUF2156). 
 This domain, found in various hypothetical prokaryotic 
proteins, has no known function.
Length=297

 Score = 61.9 bits (151),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 56/318 (18%), Positives = 106/318 (33%), Gaps = 43/318 (14%)

Query  630  LEHLIANYGDATSTSWGDERFKIWRDMATGAAVSYVPSSNNYAVIPGNPLCDPSQYNRII  689
            LE   +    A    W D+ +  +      A ++Y       A+  G+P+ DP  +   +
Sbjct  4    LERYGSEDSFANLALWRDKSY-YFYSPVGDALIAYRVEGG-GALAFGDPIGDPEAWPEAL  61

Query  690  TQFLQWMRRETKYKPIWLLCSPEVESILGDKLGWRSLSCIAEERVDPS---------RNQ  740
              FL+       ++P +   S E   +  + LG        E  VD           R  
Sbjct  62   EAFLELADDHG-WRPAFYGVSEEGAELYAE-LGLTEDRLGEEAVVDLEDFTLSGKKFRK-  118

Query  741  AASDGEIARKIRRAENEGIKIVEMKYGEMVPDDVREKIDARIQDWLANRKGTQV--HLSE  798
                  +   I R E  G         ++   ++ +++     +WL  ++GT+    L  
Sbjct  119  ------LRNAINRFERAGYTFEVEPITDV--PELLDELLEISDEWLKQKEGTEKGFSLGA  170

Query  799  IHPWRDSEHRWYFYAVDKSGTICAFVAL------AMLSPHFGMQVKYSFDFPGSPNGVIE  852
                     R       + G I AF +          S      ++     P +PNG++E
Sbjct  171  FDEGYLLGLR-GLLVRVE-GKIVAFASGEPLNGRDTASLDL---MRRD---PDAPNGLME  222

Query  853  YIVTHAIQTAARAGTKSLTFGAGATATLTPGHNLHGAKIKMLQHTYETLAK--QFHLVRK  910
            ++     +     G + +  G  A  +            ++ +  YE   +   F  +R+
Sbjct  223  FLNAELAEWLKEEGYEYVNLGF-APLSGLGERPGAPPLERLARLLYEHGERDYGFEGLRR  281

Query  911  SEFRAKLGAHEEPLYIAY  928
               + K     EP Y+AY
Sbjct  282  --AKLKYHPDWEPKYLAY  297



Lambda      K        H        a         alpha
   0.319    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1204910476


Query= TCONS_00006554

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461623 pfam05327, RRN3, RNA polymerase I specific transcripti...  315     4e-106


>CDD:461623 pfam05327, RRN3, RNA polymerase I specific transcription initiation 
factor RRN3.  This family consists of several eukaryotic 
proteins which are homologous to the yeast RRN3 protein. 
RRN3 is one of the RRN genes specifically required for the 
transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces 
cerevisiae.
Length=548

 Score = 315 bits (810),  Expect = 4e-106, Method: Composition-based stats.
 Identities = 109/217 (50%), Positives = 131/217 (60%), Gaps = 28/217 (13%)

Query  2    QPGILRQSAAAYLASFVARGAHISGEVVRDVFDLLGTHLNNLRLDYEATCRGPDLRRYGP  61
            +P I RQ+AAAYLASFVAR   +S   VR V   L   LN    + E  CRGPDL+R+G 
Sbjct  360  EPAITRQAAAAYLASFVARAKFVSRSQVRFVLSYLCDWLNRYVDEREEECRGPDLKRHGV  419

Query  62   FYSTAQALLYIFCFRWRDLTTAAMEGDTPEQIDELEPEDITFPPSVKEVLHQAIHSKLNP  121
            FY+  QALLYIFCFRWRDLT A          D+ E  D+ + P + E L +AI+SKLNP
Sbjct  420  FYAVCQALLYIFCFRWRDLTDAD---------DDEEGGDLEWLPGLDEFLQRAIYSKLNP  470

Query  122  LKVCSPAIVSEFARMAQHLNFMYVFSILETNKRLRVSSFRSISAMADPRFSHVERETRAG  181
            LKVCSP +V+EFAR+A HL F Y FSI+E+NKR   +                     A 
Sbjct  471  LKVCSPNVVTEFARIAHHLQFAYCFSIIESNKREETAGT-------------------AT  511

Query  182  DDLGYQLDAYFPFDPYQLPRSRRWLEDDYVHWRGIPG  218
                 QLDAYFPFDPY LPRS+RW+E DYV W  + G
Sbjct  512  GQEFEQLDAYFPFDPYLLPRSKRWIEPDYVEWSEVAG  548



Lambda      K        H        a         alpha
   0.320    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00006555

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461623 pfam05327, RRN3, RNA polymerase I specific transcripti...  315     4e-106


>CDD:461623 pfam05327, RRN3, RNA polymerase I specific transcription initiation 
factor RRN3.  This family consists of several eukaryotic 
proteins which are homologous to the yeast RRN3 protein. 
RRN3 is one of the RRN genes specifically required for the 
transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces 
cerevisiae.
Length=548

 Score = 315 bits (810),  Expect = 4e-106, Method: Composition-based stats.
 Identities = 109/217 (50%), Positives = 131/217 (60%), Gaps = 28/217 (13%)

Query  2    QPGILRQSAAAYLASFVARGAHISGEVVRDVFDLLGTHLNNLRLDYEATCRGPDLRRYGP  61
            +P I RQ+AAAYLASFVAR   +S   VR V   L   LN    + E  CRGPDL+R+G 
Sbjct  360  EPAITRQAAAAYLASFVARAKFVSRSQVRFVLSYLCDWLNRYVDEREEECRGPDLKRHGV  419

Query  62   FYSTAQALLYIFCFRWRDLTTAAMEGDTPEQIDELEPEDITFPPSVKEVLHQAIHSKLNP  121
            FY+  QALLYIFCFRWRDLT A          D+ E  D+ + P + E L +AI+SKLNP
Sbjct  420  FYAVCQALLYIFCFRWRDLTDAD---------DDEEGGDLEWLPGLDEFLQRAIYSKLNP  470

Query  122  LKVCSPAIVSEFARMAQHLNFMYVFSILETNKRLRVSSFRSISAMADPRFSHVERETRAG  181
            LKVCSP +V+EFAR+A HL F Y FSI+E+NKR   +                     A 
Sbjct  471  LKVCSPNVVTEFARIAHHLQFAYCFSIIESNKREETAGT-------------------AT  511

Query  182  DDLGYQLDAYFPFDPYQLPRSRRWLEDDYVHWRGIPG  218
                 QLDAYFPFDPY LPRS+RW+E DYV W  + G
Sbjct  512  GQEFEQLDAYFPFDPYLLPRSKRWIEPDYVEWSEVAG  548



Lambda      K        H        a         alpha
   0.320    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00006556

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461623 pfam05327, RRN3, RNA polymerase I specific transcripti...  315     4e-106


>CDD:461623 pfam05327, RRN3, RNA polymerase I specific transcription initiation 
factor RRN3.  This family consists of several eukaryotic 
proteins which are homologous to the yeast RRN3 protein. 
RRN3 is one of the RRN genes specifically required for the 
transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces 
cerevisiae.
Length=548

 Score = 315 bits (810),  Expect = 4e-106, Method: Composition-based stats.
 Identities = 109/217 (50%), Positives = 131/217 (60%), Gaps = 28/217 (13%)

Query  2    QPGILRQSAAAYLASFVARGAHISGEVVRDVFDLLGTHLNNLRLDYEATCRGPDLRRYGP  61
            +P I RQ+AAAYLASFVAR   +S   VR V   L   LN    + E  CRGPDL+R+G 
Sbjct  360  EPAITRQAAAAYLASFVARAKFVSRSQVRFVLSYLCDWLNRYVDEREEECRGPDLKRHGV  419

Query  62   FYSTAQALLYIFCFRWRDLTTAAMEGDTPEQIDELEPEDITFPPSVKEVLHQAIHSKLNP  121
            FY+  QALLYIFCFRWRDLT A          D+ E  D+ + P + E L +AI+SKLNP
Sbjct  420  FYAVCQALLYIFCFRWRDLTDAD---------DDEEGGDLEWLPGLDEFLQRAIYSKLNP  470

Query  122  LKVCSPAIVSEFARMAQHLNFMYVFSILETNKRLRVSSFRSISAMADPRFSHVERETRAG  181
            LKVCSP +V+EFAR+A HL F Y FSI+E+NKR   +                     A 
Sbjct  471  LKVCSPNVVTEFARIAHHLQFAYCFSIIESNKREETAGT-------------------AT  511

Query  182  DDLGYQLDAYFPFDPYQLPRSRRWLEDDYVHWRGIPG  218
                 QLDAYFPFDPY LPRS+RW+E DYV W  + G
Sbjct  512  GQEFEQLDAYFPFDPYLLPRSKRWIEPDYVEWSEVAG  548



Lambda      K        H        a         alpha
   0.320    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00000332

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461623 pfam05327, RRN3, RNA polymerase I specific transcripti...  771     0.0  


>CDD:461623 pfam05327, RRN3, RNA polymerase I specific transcription initiation 
factor RRN3.  This family consists of several eukaryotic 
proteins which are homologous to the yeast RRN3 protein. 
RRN3 is one of the RRN genes specifically required for the 
transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces 
cerevisiae.
Length=548

 Score = 771 bits (1994),  Expect = 0.0, Method: Composition-based stats.
 Identities = 281/585 (48%), Positives = 370/585 (63%), Gaps = 44/585 (8%)

Query  104  TEKSAAVVREEVRRAIQRHVSGTDSEAYDRIKEIFSADPRRLDEDGLPPEDLPTHTTLKH  163
             + S  + RE VRRA++ H  G DSE YD +KE FS DP           D P+   LK 
Sbjct  1    EDFSDKMYREFVRRALEEHEKG-DSEQYDELKEQFSPDPES--------PDAPSTALLKQ  51

Query  164  HLMGLLSNVASLDRNCNGLVNAVLHSEWLGRDESYIKLYIRFLGNLAAAQGSYLGAVLKM  223
             L  L SNV+ LDR+C+GLV A+L   WLGRDES++K YIRFLG LA+A   YL  VL M
Sbjct  52   LLKALSSNVSRLDRSCSGLVEAILSLSWLGRDESFVKAYIRFLGVLASAHPKYLSLVLSM  111

Query  224  LANNFGEIPKGTGKLPGYAPVQAAEIYSRTHMALRHVMQLIPSGSGTLSPILSMQFPFDT  283
            L +NF   P+ +G+LPGY PV   E+Y R H AL+++++LIP+    L PILS +FP   
Sbjct  112  LVSNFTPQPESSGRLPGYPPVTRREVYERVHEALKYILRLIPTAPSVLLPILSRKFPHKR  171

Query  284  DSAKANIAYTRNLLKVISYAPELQADILALITEKVVKIDVQIQVDMEDIEDEVGEDVLHA  343
            DS KA + Y RNLL++  Y PEL +DILALI E+++KIDV+IQV++ED++D+  E++L  
Sbjct  172  DSKKAQVTYIRNLLRLTEYCPELGSDILALIIERLIKIDVEIQVELEDLDDDEDEELLEQ  231

Query  344  VSPEATMLEDDENEVDDNAS--VASDDSLDVESRRVKAIKDNILKLDGMIDSLFEYYAPP  401
            +  +    +DD+++ D ++S     DD  D E +R+K IK+ + KLD ++D LFE+    
Sbjct  232  LDEDDDDDDDDDSDDDSDSSDDGLDDDEEDDEVQRIKKIKELVEKLDAILDLLFEHLDSK  291

Query  402  FTTGT---LDDKE--NALDLLLSHFQSIILPTYRSRHSQFLLFHFSQSSPILVDRFAATC  456
            F++G+   L++ E     + LLS F+S ILPTYRSRH+QFLLFHFSQ SP L+D F  T 
Sbjct  292  FSSGSPEELNEGEGVEVFNTLLSLFKSTILPTYRSRHTQFLLFHFSQLSPELMDSFLGTL  351

Query  457  VQLIFNKMQPGILRQSAAAYLASFVARGAHISGEVVRDVFDLLGTHLNNLRLDYEATCRG  516
            + + F+  +P I RQ+AAAYLASFVAR   +S   VR V   L   LN    + E  CRG
Sbjct  352  IDIAFDPNEPAITRQAAAAYLASFVARAKFVSRSQVRFVLSYLCDWLNRYVDEREEECRG  411

Query  517  PDLRRYGPFYSTAQALLYIFCFRWRDLTTAAMEGDTPEQIDELEPEDITFPPSVKEVLHQ  576
            PDL+R+G FY+  QALLYIFCFRWRDLT A          D+ E  D+ + P + E L +
Sbjct  412  PDLKRHGVFYAVCQALLYIFCFRWRDLTDAD---------DDEEGGDLEWLPGLDEFLQR  462

Query  577  AIHSKLNPLKVCSPAIVSEFARMAQHLNFMYVFSILETNKRLRVSSFRSISAMADPRFSH  636
            AI+SKLNPLKVCSP +V+EFAR+A HL F Y FSI+E+NKR   +               
Sbjct  463  AIYSKLNPLKVCSPNVVTEFARIAHHLQFAYCFSIIESNKREETAGT-------------  509

Query  637  VERETRAGDDLGYQLDAYFPFDPYQLPRSRRWLEDDYVHWRGIPG  681
                  A      QLDAYFPFDPY LPRS+RW+E DYV W  + G
Sbjct  510  ------ATGQEFEQLDAYFPFDPYLLPRSKRWIEPDYVEWSEVAG  548



Lambda      K        H        a         alpha
   0.317    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00000333

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461623 pfam05327, RRN3, RNA polymerase I specific transcripti...  771     0.0  


>CDD:461623 pfam05327, RRN3, RNA polymerase I specific transcription initiation 
factor RRN3.  This family consists of several eukaryotic 
proteins which are homologous to the yeast RRN3 protein. 
RRN3 is one of the RRN genes specifically required for the 
transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces 
cerevisiae.
Length=548

 Score = 771 bits (1994),  Expect = 0.0, Method: Composition-based stats.
 Identities = 281/585 (48%), Positives = 370/585 (63%), Gaps = 44/585 (8%)

Query  104  TEKSAAVVREEVRRAIQRHVSGTDSEAYDRIKEIFSADPRRLDEDGLPPEDLPTHTTLKH  163
             + S  + RE VRRA++ H  G DSE YD +KE FS DP           D P+   LK 
Sbjct  1    EDFSDKMYREFVRRALEEHEKG-DSEQYDELKEQFSPDPES--------PDAPSTALLKQ  51

Query  164  HLMGLLSNVASLDRNCNGLVNAVLHSEWLGRDESYIKLYIRFLGNLAAAQGSYLGAVLKM  223
             L  L SNV+ LDR+C+GLV A+L   WLGRDES++K YIRFLG LA+A   YL  VL M
Sbjct  52   LLKALSSNVSRLDRSCSGLVEAILSLSWLGRDESFVKAYIRFLGVLASAHPKYLSLVLSM  111

Query  224  LANNFGEIPKGTGKLPGYAPVQAAEIYSRTHMALRHVMQLIPSGSGTLSPILSMQFPFDT  283
            L +NF   P+ +G+LPGY PV   E+Y R H AL+++++LIP+    L PILS +FP   
Sbjct  112  LVSNFTPQPESSGRLPGYPPVTRREVYERVHEALKYILRLIPTAPSVLLPILSRKFPHKR  171

Query  284  DSAKANIAYTRNLLKVISYAPELQADILALITEKVVKIDVQIQVDMEDIEDEVGEDVLHA  343
            DS KA + Y RNLL++  Y PEL +DILALI E+++KIDV+IQV++ED++D+  E++L  
Sbjct  172  DSKKAQVTYIRNLLRLTEYCPELGSDILALIIERLIKIDVEIQVELEDLDDDEDEELLEQ  231

Query  344  VSPEATMLEDDENEVDDNAS--VASDDSLDVESRRVKAIKDNILKLDGMIDSLFEYYAPP  401
            +  +    +DD+++ D ++S     DD  D E +R+K IK+ + KLD ++D LFE+    
Sbjct  232  LDEDDDDDDDDDSDDDSDSSDDGLDDDEEDDEVQRIKKIKELVEKLDAILDLLFEHLDSK  291

Query  402  FTTGT---LDDKE--NALDLLLSHFQSIILPTYRSRHSQFLLFHFSQSSPILVDRFAATC  456
            F++G+   L++ E     + LLS F+S ILPTYRSRH+QFLLFHFSQ SP L+D F  T 
Sbjct  292  FSSGSPEELNEGEGVEVFNTLLSLFKSTILPTYRSRHTQFLLFHFSQLSPELMDSFLGTL  351

Query  457  VQLIFNKMQPGILRQSAAAYLASFVARGAHISGEVVRDVFDLLGTHLNNLRLDYEATCRG  516
            + + F+  +P I RQ+AAAYLASFVAR   +S   VR V   L   LN    + E  CRG
Sbjct  352  IDIAFDPNEPAITRQAAAAYLASFVARAKFVSRSQVRFVLSYLCDWLNRYVDEREEECRG  411

Query  517  PDLRRYGPFYSTAQALLYIFCFRWRDLTTAAMEGDTPEQIDELEPEDITFPPSVKEVLHQ  576
            PDL+R+G FY+  QALLYIFCFRWRDLT A          D+ E  D+ + P + E L +
Sbjct  412  PDLKRHGVFYAVCQALLYIFCFRWRDLTDAD---------DDEEGGDLEWLPGLDEFLQR  462

Query  577  AIHSKLNPLKVCSPAIVSEFARMAQHLNFMYVFSILETNKRLRVSSFRSISAMADPRFSH  636
            AI+SKLNPLKVCSP +V+EFAR+A HL F Y FSI+E+NKR   +               
Sbjct  463  AIYSKLNPLKVCSPNVVTEFARIAHHLQFAYCFSIIESNKREETAGT-------------  509

Query  637  VERETRAGDDLGYQLDAYFPFDPYQLPRSRRWLEDDYVHWRGIPG  681
                  A      QLDAYFPFDPY LPRS+RW+E DYV W  + G
Sbjct  510  ------ATGQEFEQLDAYFPFDPYLLPRSKRWIEPDYVEWSEVAG  548



Lambda      K        H        a         alpha
   0.317    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00000334

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461623 pfam05327, RRN3, RNA polymerase I specific transcripti...  771     0.0  


>CDD:461623 pfam05327, RRN3, RNA polymerase I specific transcription initiation 
factor RRN3.  This family consists of several eukaryotic 
proteins which are homologous to the yeast RRN3 protein. 
RRN3 is one of the RRN genes specifically required for the 
transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces 
cerevisiae.
Length=548

 Score = 771 bits (1994),  Expect = 0.0, Method: Composition-based stats.
 Identities = 281/585 (48%), Positives = 370/585 (63%), Gaps = 44/585 (8%)

Query  104  TEKSAAVVREEVRRAIQRHVSGTDSEAYDRIKEIFSADPRRLDEDGLPPEDLPTHTTLKH  163
             + S  + RE VRRA++ H  G DSE YD +KE FS DP           D P+   LK 
Sbjct  1    EDFSDKMYREFVRRALEEHEKG-DSEQYDELKEQFSPDPES--------PDAPSTALLKQ  51

Query  164  HLMGLLSNVASLDRNCNGLVNAVLHSEWLGRDESYIKLYIRFLGNLAAAQGSYLGAVLKM  223
             L  L SNV+ LDR+C+GLV A+L   WLGRDES++K YIRFLG LA+A   YL  VL M
Sbjct  52   LLKALSSNVSRLDRSCSGLVEAILSLSWLGRDESFVKAYIRFLGVLASAHPKYLSLVLSM  111

Query  224  LANNFGEIPKGTGKLPGYAPVQAAEIYSRTHMALRHVMQLIPSGSGTLSPILSMQFPFDT  283
            L +NF   P+ +G+LPGY PV   E+Y R H AL+++++LIP+    L PILS +FP   
Sbjct  112  LVSNFTPQPESSGRLPGYPPVTRREVYERVHEALKYILRLIPTAPSVLLPILSRKFPHKR  171

Query  284  DSAKANIAYTRNLLKVISYAPELQADILALITEKVVKIDVQIQVDMEDIEDEVGEDVLHA  343
            DS KA + Y RNLL++  Y PEL +DILALI E+++KIDV+IQV++ED++D+  E++L  
Sbjct  172  DSKKAQVTYIRNLLRLTEYCPELGSDILALIIERLIKIDVEIQVELEDLDDDEDEELLEQ  231

Query  344  VSPEATMLEDDENEVDDNAS--VASDDSLDVESRRVKAIKDNILKLDGMIDSLFEYYAPP  401
            +  +    +DD+++ D ++S     DD  D E +R+K IK+ + KLD ++D LFE+    
Sbjct  232  LDEDDDDDDDDDSDDDSDSSDDGLDDDEEDDEVQRIKKIKELVEKLDAILDLLFEHLDSK  291

Query  402  FTTGT---LDDKE--NALDLLLSHFQSIILPTYRSRHSQFLLFHFSQSSPILVDRFAATC  456
            F++G+   L++ E     + LLS F+S ILPTYRSRH+QFLLFHFSQ SP L+D F  T 
Sbjct  292  FSSGSPEELNEGEGVEVFNTLLSLFKSTILPTYRSRHTQFLLFHFSQLSPELMDSFLGTL  351

Query  457  VQLIFNKMQPGILRQSAAAYLASFVARGAHISGEVVRDVFDLLGTHLNNLRLDYEATCRG  516
            + + F+  +P I RQ+AAAYLASFVAR   +S   VR V   L   LN    + E  CRG
Sbjct  352  IDIAFDPNEPAITRQAAAAYLASFVARAKFVSRSQVRFVLSYLCDWLNRYVDEREEECRG  411

Query  517  PDLRRYGPFYSTAQALLYIFCFRWRDLTTAAMEGDTPEQIDELEPEDITFPPSVKEVLHQ  576
            PDL+R+G FY+  QALLYIFCFRWRDLT A          D+ E  D+ + P + E L +
Sbjct  412  PDLKRHGVFYAVCQALLYIFCFRWRDLTDAD---------DDEEGGDLEWLPGLDEFLQR  462

Query  577  AIHSKLNPLKVCSPAIVSEFARMAQHLNFMYVFSILETNKRLRVSSFRSISAMADPRFSH  636
            AI+SKLNPLKVCSP +V+EFAR+A HL F Y FSI+E+NKR   +               
Sbjct  463  AIYSKLNPLKVCSPNVVTEFARIAHHLQFAYCFSIIESNKREETAGT-------------  509

Query  637  VERETRAGDDLGYQLDAYFPFDPYQLPRSRRWLEDDYVHWRGIPG  681
                  A      QLDAYFPFDPY LPRS+RW+E DYV W  + G
Sbjct  510  ------ATGQEFEQLDAYFPFDPYLLPRSKRWIEPDYVEWSEVAG  548



Lambda      K        H        a         alpha
   0.317    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00006557

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461623 pfam05327, RRN3, RNA polymerase I specific transcripti...  771     0.0  


>CDD:461623 pfam05327, RRN3, RNA polymerase I specific transcription initiation 
factor RRN3.  This family consists of several eukaryotic 
proteins which are homologous to the yeast RRN3 protein. 
RRN3 is one of the RRN genes specifically required for the 
transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces 
cerevisiae.
Length=548

 Score = 771 bits (1994),  Expect = 0.0, Method: Composition-based stats.
 Identities = 281/585 (48%), Positives = 370/585 (63%), Gaps = 44/585 (8%)

Query  104  TEKSAAVVREEVRRAIQRHVSGTDSEAYDRIKEIFSADPRRLDEDGLPPEDLPTHTTLKH  163
             + S  + RE VRRA++ H  G DSE YD +KE FS DP           D P+   LK 
Sbjct  1    EDFSDKMYREFVRRALEEHEKG-DSEQYDELKEQFSPDPES--------PDAPSTALLKQ  51

Query  164  HLMGLLSNVASLDRNCNGLVNAVLHSEWLGRDESYIKLYIRFLGNLAAAQGSYLGAVLKM  223
             L  L SNV+ LDR+C+GLV A+L   WLGRDES++K YIRFLG LA+A   YL  VL M
Sbjct  52   LLKALSSNVSRLDRSCSGLVEAILSLSWLGRDESFVKAYIRFLGVLASAHPKYLSLVLSM  111

Query  224  LANNFGEIPKGTGKLPGYAPVQAAEIYSRTHMALRHVMQLIPSGSGTLSPILSMQFPFDT  283
            L +NF   P+ +G+LPGY PV   E+Y R H AL+++++LIP+    L PILS +FP   
Sbjct  112  LVSNFTPQPESSGRLPGYPPVTRREVYERVHEALKYILRLIPTAPSVLLPILSRKFPHKR  171

Query  284  DSAKANIAYTRNLLKVISYAPELQADILALITEKVVKIDVQIQVDMEDIEDEVGEDVLHA  343
            DS KA + Y RNLL++  Y PEL +DILALI E+++KIDV+IQV++ED++D+  E++L  
Sbjct  172  DSKKAQVTYIRNLLRLTEYCPELGSDILALIIERLIKIDVEIQVELEDLDDDEDEELLEQ  231

Query  344  VSPEATMLEDDENEVDDNAS--VASDDSLDVESRRVKAIKDNILKLDGMIDSLFEYYAPP  401
            +  +    +DD+++ D ++S     DD  D E +R+K IK+ + KLD ++D LFE+    
Sbjct  232  LDEDDDDDDDDDSDDDSDSSDDGLDDDEEDDEVQRIKKIKELVEKLDAILDLLFEHLDSK  291

Query  402  FTTGT---LDDKE--NALDLLLSHFQSIILPTYRSRHSQFLLFHFSQSSPILVDRFAATC  456
            F++G+   L++ E     + LLS F+S ILPTYRSRH+QFLLFHFSQ SP L+D F  T 
Sbjct  292  FSSGSPEELNEGEGVEVFNTLLSLFKSTILPTYRSRHTQFLLFHFSQLSPELMDSFLGTL  351

Query  457  VQLIFNKMQPGILRQSAAAYLASFVARGAHISGEVVRDVFDLLGTHLNNLRLDYEATCRG  516
            + + F+  +P I RQ+AAAYLASFVAR   +S   VR V   L   LN    + E  CRG
Sbjct  352  IDIAFDPNEPAITRQAAAAYLASFVARAKFVSRSQVRFVLSYLCDWLNRYVDEREEECRG  411

Query  517  PDLRRYGPFYSTAQALLYIFCFRWRDLTTAAMEGDTPEQIDELEPEDITFPPSVKEVLHQ  576
            PDL+R+G FY+  QALLYIFCFRWRDLT A          D+ E  D+ + P + E L +
Sbjct  412  PDLKRHGVFYAVCQALLYIFCFRWRDLTDAD---------DDEEGGDLEWLPGLDEFLQR  462

Query  577  AIHSKLNPLKVCSPAIVSEFARMAQHLNFMYVFSILETNKRLRVSSFRSISAMADPRFSH  636
            AI+SKLNPLKVCSP +V+EFAR+A HL F Y FSI+E+NKR   +               
Sbjct  463  AIYSKLNPLKVCSPNVVTEFARIAHHLQFAYCFSIIESNKREETAGT-------------  509

Query  637  VERETRAGDDLGYQLDAYFPFDPYQLPRSRRWLEDDYVHWRGIPG  681
                  A      QLDAYFPFDPY LPRS+RW+E DYV W  + G
Sbjct  510  ------ATGQEFEQLDAYFPFDPYLLPRSKRWIEPDYVEWSEVAG  548



Lambda      K        H        a         alpha
   0.317    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00006558

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00006559

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00000335

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00000336

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00000337

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00006560

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00000338

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461470 pfam04900, Fcf1, Fcf1. Fcf1 is a nucleolar protein inv...  82.2    3e-20


>CDD:461470 pfam04900, Fcf1, Fcf1.  Fcf1 is a nucleolar protein involved 
in pre-rRNA processing. Depletion of yeast Fcf1 and Fcf2 leads 
to a decrease in synthesis of the 18S rRNA and results in 
a deficit in 40S ribosomal subunits.
Length=99

 Score = 82.2 bits (204),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 44/143 (31%)

Query  51   RTLQGKVKPLLTKCSLAAIMASQPINPKTNNPYRPTHLPPPTILPLRHCSHNEDSTPIDE  110
            +TLQGKVKP++T+C +A +        K    +R            R C+H +  T  D 
Sbjct  1    KTLQGKVKPMITQCVIAELE-------KLGPKFRGALDIAKR-FERRRCNHPKKPTSAD-  51

Query  111  VECLLSLLSPSKEVKRNKEHYTLATADPPAPAKADSGDGKKRKRGADEGRDALQRAQKLR  170
             +C++S + P      NK  Y +AT D                             + LR
Sbjct  52   -DCIVSRVGPG-----NKHRYIVATQD-----------------------------RDLR  76

Query  171  IGARSIPGVPIVYVKRSVMILEP  193
               R IPGVP++Y+ RSVM+LEP
Sbjct  77   RRLRKIPGVPLLYINRSVMVLEP  99



Lambda      K        H        a         alpha
   0.310    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 379043084


Query= TCONS_00006561

Length=542


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682843766


Query= TCONS_00000339

Length=542


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682843766


Query= TCONS_00000340

Length=542


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682843766


Query= TCONS_00006562

Length=542


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682843766


Query= TCONS_00006563

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00000346

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00000345

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00000344

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00006564

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00000347

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00000350

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00006565

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00000349

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00000348

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00000351

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00000353

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00000352

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00006566

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00000354

Length=1000
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461125 pfam04003, Utp12, Dip2/Utp12 Family. This domain is fo...  116     2e-31


>CDD:461125 pfam04003, Utp12, Dip2/Utp12 Family.  This domain is found at 
the C-terminus of proteins containing WD40 repeats. These proteins 
are part of the U3 ribonucleoprotein the yeast protein 
is called Utp12 or DIP2.
Length=106

 Score = 116 bits (294),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 39/106 (37%), Positives = 64/106 (60%), Gaps = 2/106 (2%)

Query  860  AEQHVL-SVVQKVPAAALQDALLVLPFSKVPALFTFLNIW-ANRAWNIPLTCRVLFFMLK  917
             ++++L SV++K+P + ++  LL LPFS V  L  FL    A R+ ++ L  R L F+L+
Sbjct  1    NDEYLLESVLEKIPPSDIELTLLRLPFSYVLRLLKFLAERLAERSPHLELLLRWLKFLLR  60

Query  918  THHRQIIASKMMRPMLDSIRSTLRRVLTRQKDEMGFNLSALQIIGQ  963
            TH   ++++  +RP+L S++  LRR L   KD +G NL AL  +  
Sbjct  61   THGGYLVSNPDLRPVLRSLQKLLRRRLKELKDLLGLNLGALDYLLS  106



Lambda      K        H        a         alpha
   0.318    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1279951904


Query= TCONS_00006568

Length=291


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00006567

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00000355

Length=291


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00006569

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:370028 pfam08643, DUF1776, Fungal family of unknown function ...  105     2e-28


>CDD:370028 pfam08643, DUF1776, Fungal family of unknown function (DUF1776). 
 This is a fungal family of unknown function. One of the 
proteins in this family YSC83 has been localized to the mitochondria.
Length=295

 Score = 105 bits (265),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 44/68 (65%), Positives = 53/68 (78%), Gaps = 0/68 (0%)

Query  122  ARKEIVVVAGSPHEPMTRAIATDLERRGYIVFVTVTSAQEEQLVRSENRMDIRALWLDLT  181
            AR+++V+VAGSP EP+TRAIA DLERRG+IVFVTVTSA++ + V SE R DIR L LD T
Sbjct  1    ARRQVVLVAGSPTEPLTRAIALDLERRGFIVFVTVTSAKDYKTVESEQRPDIRPLSLDDT  60

Query  182  TVSLYSAS  189
              S   AS
Sbjct  61   APSSIEAS  68



Lambda      K        H        a         alpha
   0.322    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00006570

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00000356

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00000357

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00000358

Length=756


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 963310624


Query= TCONS_00006571

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403636 pfam12505, DUF3712, Protein of unknown function (DUF37...  165     1e-51


>CDD:403636 pfam12505, DUF3712, Protein of unknown function (DUF3712).  This 
domain family is found in eukaryotes, and is approximately 
130 amino acids in length.
Length=125

 Score = 165 bits (419),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 1/125 (1%)

Query  117  ATFATVKVPQVKA-NDGTVVHISQTLDLSDVGAFGGFATAVMQNEEIKLNIYGKPDLKQG  175
              FAT+ +P + A  +GT++ + Q LD++DV AF  FATA++ NEE  L++ GK  LK G
Sbjct  1    TPFATLPLPGITAKGNGTLILVDQDLDITDVDAFTDFATALVFNEEFDLSVKGKTTLKLG  60

Query  176  GLPKIDVTYNKTVTMKALNKLEGFAITEMHALSGKSANGANFGGTVYIPNPSPMTISMGN  235
            GLP   VT +KTVT+K LN L+GF+IT+        A+G N   T  IPNPS +T+ +GN
Sbjct  61   GLPTSGVTLDKTVTLKGLNGLKGFSITDFDLPGPDPADGINLVATATIPNPSVLTLELGN  120

Query  236  VTLDL  240
            VTL+L
Sbjct  121  VTLNL  125



Lambda      K        H        a         alpha
   0.316    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00006572

Length=756


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 963310624


Query= TCONS_00006573

Length=706


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 904046270


Query= TCONS_00000360

Length=756


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 963310624


Query= TCONS_00000359

Length=756


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 963310624


Query= TCONS_00006574

Length=118
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403636 pfam12505, DUF3712, Protein of unknown function (DUF37...  96.9    8e-28


>CDD:403636 pfam12505, DUF3712, Protein of unknown function (DUF3712).  This 
domain family is found in eukaryotes, and is approximately 
130 amino acids in length.
Length=125

 Score = 96.9 bits (242),  Expect = 8e-28, Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (69%), Gaps = 1/77 (1%)

Query  42   ATFATVKVPQVKA-NDGTVVHISQTLDLSDVGAFGGFATAVMQNEEIKLNIYGKPDLKQG  100
              FAT+ +P + A  +GT++ + Q LD++DV AF  FATA++ NEE  L++ GK  LK G
Sbjct  1    TPFATLPLPGITAKGNGTLILVDQDLDITDVDAFTDFATALVFNEEFDLSVKGKTTLKLG  60

Query  101  GLPKIDVTYNKTVTMKG  117
            GLP   VT +KTVT+KG
Sbjct  61   GLPTSGVTLDKTVTLKG  77



Lambda      K        H        a         alpha
   0.317    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0660    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00000362

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403636 pfam12505, DUF3712, Protein of unknown function (DUF37...  165     1e-51


>CDD:403636 pfam12505, DUF3712, Protein of unknown function (DUF3712).  This 
domain family is found in eukaryotes, and is approximately 
130 amino acids in length.
Length=125

 Score = 165 bits (419),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 1/125 (1%)

Query  117  ATFATVKVPQVKA-NDGTVVHISQTLDLSDVGAFGGFATAVMQNEEIKLNIYGKPDLKQG  175
              FAT+ +P + A  +GT++ + Q LD++DV AF  FATA++ NEE  L++ GK  LK G
Sbjct  1    TPFATLPLPGITAKGNGTLILVDQDLDITDVDAFTDFATALVFNEEFDLSVKGKTTLKLG  60

Query  176  GLPKIDVTYNKTVTMKALNKLEGFAITEMHALSGKSANGANFGGTVYIPNPSPMTISMGN  235
            GLP   VT +KTVT+K LN L+GF+IT+        A+G N   T  IPNPS +T+ +GN
Sbjct  61   GLPTSGVTLDKTVTLKGLNGLKGFSITDFDLPGPDPADGINLVATATIPNPSVLTLELGN  120

Query  236  VTLDL  240
            VTL+L
Sbjct  121  VTLNL  125



Lambda      K        H        a         alpha
   0.316    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00000363

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403636 pfam12505, DUF3712, Protein of unknown function (DUF37...  165     1e-51


>CDD:403636 pfam12505, DUF3712, Protein of unknown function (DUF3712).  This 
domain family is found in eukaryotes, and is approximately 
130 amino acids in length.
Length=125

 Score = 165 bits (419),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 1/125 (1%)

Query  117  ATFATVKVPQVKA-NDGTVVHISQTLDLSDVGAFGGFATAVMQNEEIKLNIYGKPDLKQG  175
              FAT+ +P + A  +GT++ + Q LD++DV AF  FATA++ NEE  L++ GK  LK G
Sbjct  1    TPFATLPLPGITAKGNGTLILVDQDLDITDVDAFTDFATALVFNEEFDLSVKGKTTLKLG  60

Query  176  GLPKIDVTYNKTVTMKALNKLEGFAITEMHALSGKSANGANFGGTVYIPNPSPMTISMGN  235
            GLP   VT +KTVT+K LN L+GF+IT+        A+G N   T  IPNPS +T+ +GN
Sbjct  61   GLPTSGVTLDKTVTLKGLNGLKGFSITDFDLPGPDPADGINLVATATIPNPSVLTLELGN  120

Query  236  VTLDL  240
            VTL+L
Sbjct  121  VTLNL  125



Lambda      K        H        a         alpha
   0.316    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00000364

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403636 pfam12505, DUF3712, Protein of unknown function (DUF37...  165     1e-51


>CDD:403636 pfam12505, DUF3712, Protein of unknown function (DUF3712).  This 
domain family is found in eukaryotes, and is approximately 
130 amino acids in length.
Length=125

 Score = 165 bits (419),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 1/125 (1%)

Query  117  ATFATVKVPQVKA-NDGTVVHISQTLDLSDVGAFGGFATAVMQNEEIKLNIYGKPDLKQG  175
              FAT+ +P + A  +GT++ + Q LD++DV AF  FATA++ NEE  L++ GK  LK G
Sbjct  1    TPFATLPLPGITAKGNGTLILVDQDLDITDVDAFTDFATALVFNEEFDLSVKGKTTLKLG  60

Query  176  GLPKIDVTYNKTVTMKALNKLEGFAITEMHALSGKSANGANFGGTVYIPNPSPMTISMGN  235
            GLP   VT +KTVT+K LN L+GF+IT+        A+G N   T  IPNPS +T+ +GN
Sbjct  61   GLPTSGVTLDKTVTLKGLNGLKGFSITDFDLPGPDPADGINLVATATIPNPSVLTLELGN  120

Query  236  VTLDL  240
            VTL+L
Sbjct  121  VTLNL  125



Lambda      K        H        a         alpha
   0.316    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00006575

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459913 pfam00710, Asparaginase, Asparaginase, N-terminal. Thi...  222     2e-72
CDD:465490 pfam17763, Asparaginase_C, Glutaminase/Asparaginase C-...  96.8    3e-25


>CDD:459913 pfam00710, Asparaginase, Asparaginase, N-terminal.  This is the 
N-terminal domain of this enzyme.
Length=188

 Score = 222 bits (567),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 81/194 (42%), Positives = 116/194 (60%), Gaps = 7/194 (4%)

Query  55   VTILATGGTIAGSSNDNTATTGYTAGAIGIQQLMDAVPEMLDVANVAGIQVANVGSPDVT  114
            V ILATGGTIA  ++ +         A+  ++L+ AVPE+ D+A +   QVAN+ S ++T
Sbjct  1    VLILATGGTIASRADSSGGAVVP---ALTGEELLAAVPELADIAEIEAEQVANIDSSNMT  57

Query  115  SSLLLHMARTINEVVCDDPTMSGAVITHGTDTLEETAFFLDATV-NCGKPIVVVGAMRPA  173
             +  L +AR I E + D     G V+THGTDTLEETA  L   + N GKP+V+ G+ RP+
Sbjct  58   PADWLRLARRIAEALDDY---DGVVVTHGTDTLEETASALSFMLKNLGKPVVLTGSQRPS  114

Query  174  TAISADGPFNLLQAVTVAAHPTARNRGALVVMNDRIVSAYYVSKTNANTMDTFKAVEMGN  233
               S+DGP NLL A+ VAA P AR  G LVV ND++  A  V+KT+ +++D F +   G 
Sbjct  115  DEPSSDGPMNLLAALRVAASPAARGPGVLVVFNDKLHRARRVTKTHTSSLDAFDSPNFGP  174

Query  234  LGAIISNKPYFFYP  247
            LG +   +   +  
Sbjct  175  LGEVDGGQVELYRE  188


>CDD:465490 pfam17763, Asparaginase_C, Glutaminase/Asparaginase C-terminal 
domain.  This domain is found at the C-terminus of asparaginase 
enzymes.
Length=114

 Score = 96.8 bits (242),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 52/115 (45%), Positives = 65/115 (57%), Gaps = 9/115 (8%)

Query  267  RVDILYSYQDMQNDTLYDAVDNGAKGIVIAGSGAGSVSSGYYDAIDDIASTHSLPVVLST  326
            RVDILY Y  M  + L  A+  GAKGIVIAG GAG+V S   DA+ + A    +PVV S+
Sbjct  1    RVDILYLYPGMDPELLDAALAAGAKGIVIAGFGAGNVPSALLDALKE-AVARGIPVVRSS  59

Query  327  RTGNGEVAITDSET--------TIESGFLNPQKARILLGLLLAEDKGFKEIKEAF  373
            R G+G V +   ET         I  G L P+KARI L L L +    +EI+E F
Sbjct  60   RCGSGRVNLGYYETGRDLLEAGVISGGDLTPEKARIKLMLALGKGLDPEEIRELF  114



Lambda      K        H        a         alpha
   0.316    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00006576

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459913 pfam00710, Asparaginase, Asparaginase, N-terminal. Thi...  220     6e-73


>CDD:459913 pfam00710, Asparaginase, Asparaginase, N-terminal.  This is the 
N-terminal domain of this enzyme.
Length=188

 Score = 220 bits (564),  Expect = 6e-73, Method: Composition-based stats.
 Identities = 81/194 (42%), Positives = 116/194 (60%), Gaps = 7/194 (4%)

Query  55   VTILATGGTIAGSSNDNTATTGYTAGAIGIQQLMDAVPEMLDVANVAGIQVANVGSPDVT  114
            V ILATGGTIA  ++ +         A+  ++L+ AVPE+ D+A +   QVAN+ S ++T
Sbjct  1    VLILATGGTIASRADSSGGAVVP---ALTGEELLAAVPELADIAEIEAEQVANIDSSNMT  57

Query  115  SSLLLHMARTINEVVCDDPTMSGAVITHGTDTLEETAFFLDATV-NCGKPIVVVGAMRPA  173
             +  L +AR I E + D     G V+THGTDTLEETA  L   + N GKP+V+ G+ RP+
Sbjct  58   PADWLRLARRIAEALDDY---DGVVVTHGTDTLEETASALSFMLKNLGKPVVLTGSQRPS  114

Query  174  TAISADGPFNLLQAVTVAAHPTARNRGALVVMNDRIVSAYYVSKTNANTMDTFKAVEMGN  233
               S+DGP NLL A+ VAA P AR  G LVV ND++  A  V+KT+ +++D F +   G 
Sbjct  115  DEPSSDGPMNLLAALRVAASPAARGPGVLVVFNDKLHRARRVTKTHTSSLDAFDSPNFGP  174

Query  234  LGAIISNKPYFFYP  247
            LG +   +   +  
Sbjct  175  LGEVDGGQVELYRE  188



Lambda      K        H        a         alpha
   0.317    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00000365

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403636 pfam12505, DUF3712, Protein of unknown function (DUF37...  102     5e-29


>CDD:403636 pfam12505, DUF3712, Protein of unknown function (DUF3712).  This 
domain family is found in eukaryotes, and is approximately 
130 amino acids in length.
Length=125

 Score = 102 bits (257),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (69%), Gaps = 1/77 (1%)

Query  117  ATFATVKVPQVKA-NDGTVVHISQTLDLSDVGAFGGFATAVMQNEEIKLNIYGKPDLKQG  175
              FAT+ +P + A  +GT++ + Q LD++DV AF  FATA++ NEE  L++ GK  LK G
Sbjct  1    TPFATLPLPGITAKGNGTLILVDQDLDITDVDAFTDFATALVFNEEFDLSVKGKTTLKLG  60

Query  176  GLPKIDVTYNKTVTMKG  192
            GLP   VT +KTVT+KG
Sbjct  61   GLPTSGVTLDKTVTLKG  77



Lambda      K        H        a         alpha
   0.319    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00000366

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403636 pfam12505, DUF3712, Protein of unknown function (DUF37...  158     4e-50


>CDD:403636 pfam12505, DUF3712, Protein of unknown function (DUF3712).  This 
domain family is found in eukaryotes, and is approximately 
130 amino acids in length.
Length=125

 Score = 158 bits (402),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 1/125 (1%)

Query  42   ATFATVKVPQVKA-NDGTVVHISQTLDLSDVGAFGGFATAVMQNEEIKLNIYGKPDLKQG  100
              FAT+ +P + A  +GT++ + Q LD++DV AF  FATA++ NEE  L++ GK  LK G
Sbjct  1    TPFATLPLPGITAKGNGTLILVDQDLDITDVDAFTDFATALVFNEEFDLSVKGKTTLKLG  60

Query  101  GLPKIDVTYNKTVTMKALNKLEGFAITEMHALSGKSANGANFGGTVYIPNPSPMTISMGN  160
            GLP   VT +KTVT+K LN L+GF+IT+        A+G N   T  IPNPS +T+ +GN
Sbjct  61   GLPTSGVTLDKTVTLKGLNGLKGFSITDFDLPGPDPADGINLVATATIPNPSVLTLELGN  120

Query  161  VTLDL  165
            VTL+L
Sbjct  121  VTLNL  125



Lambda      K        H        a         alpha
   0.314    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00000367

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403636 pfam12505, DUF3712, Protein of unknown function (DUF37...  165     1e-51


>CDD:403636 pfam12505, DUF3712, Protein of unknown function (DUF3712).  This 
domain family is found in eukaryotes, and is approximately 
130 amino acids in length.
Length=125

 Score = 165 bits (419),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 1/125 (1%)

Query  117  ATFATVKVPQVKA-NDGTVVHISQTLDLSDVGAFGGFATAVMQNEEIKLNIYGKPDLKQG  175
              FAT+ +P + A  +GT++ + Q LD++DV AF  FATA++ NEE  L++ GK  LK G
Sbjct  1    TPFATLPLPGITAKGNGTLILVDQDLDITDVDAFTDFATALVFNEEFDLSVKGKTTLKLG  60

Query  176  GLPKIDVTYNKTVTMKALNKLEGFAITEMHALSGKSANGANFGGTVYIPNPSPMTISMGN  235
            GLP   VT +KTVT+K LN L+GF+IT+        A+G N   T  IPNPS +T+ +GN
Sbjct  61   GLPTSGVTLDKTVTLKGLNGLKGFSITDFDLPGPDPADGINLVATATIPNPSVLTLELGN  120

Query  236  VTLDL  240
            VTL+L
Sbjct  121  VTLNL  125



Lambda      K        H        a         alpha
   0.316    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00000368

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459913 pfam00710, Asparaginase, Asparaginase, N-terminal. Thi...  220     6e-73


>CDD:459913 pfam00710, Asparaginase, Asparaginase, N-terminal.  This is the 
N-terminal domain of this enzyme.
Length=188

 Score = 220 bits (564),  Expect = 6e-73, Method: Composition-based stats.
 Identities = 81/194 (42%), Positives = 116/194 (60%), Gaps = 7/194 (4%)

Query  55   VTILATGGTIAGSSNDNTATTGYTAGAIGIQQLMDAVPEMLDVANVAGIQVANVGSPDVT  114
            V ILATGGTIA  ++ +         A+  ++L+ AVPE+ D+A +   QVAN+ S ++T
Sbjct  1    VLILATGGTIASRADSSGGAVVP---ALTGEELLAAVPELADIAEIEAEQVANIDSSNMT  57

Query  115  SSLLLHMARTINEVVCDDPTMSGAVITHGTDTLEETAFFLDATV-NCGKPIVVVGAMRPA  173
             +  L +AR I E + D     G V+THGTDTLEETA  L   + N GKP+V+ G+ RP+
Sbjct  58   PADWLRLARRIAEALDDY---DGVVVTHGTDTLEETASALSFMLKNLGKPVVLTGSQRPS  114

Query  174  TAISADGPFNLLQAVTVAAHPTARNRGALVVMNDRIVSAYYVSKTNANTMDTFKAVEMGN  233
               S+DGP NLL A+ VAA P AR  G LVV ND++  A  V+KT+ +++D F +   G 
Sbjct  115  DEPSSDGPMNLLAALRVAASPAARGPGVLVVFNDKLHRARRVTKTHTSSLDAFDSPNFGP  174

Query  234  LGAIISNKPYFFYP  247
            LG +   +   +  
Sbjct  175  LGEVDGGQVELYRE  188



Lambda      K        H        a         alpha
   0.317    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00000369

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459913 pfam00710, Asparaginase, Asparaginase, N-terminal. Thi...  222     2e-72
CDD:465490 pfam17763, Asparaginase_C, Glutaminase/Asparaginase C-...  96.8    3e-25


>CDD:459913 pfam00710, Asparaginase, Asparaginase, N-terminal.  This is the 
N-terminal domain of this enzyme.
Length=188

 Score = 222 bits (567),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 81/194 (42%), Positives = 116/194 (60%), Gaps = 7/194 (4%)

Query  55   VTILATGGTIAGSSNDNTATTGYTAGAIGIQQLMDAVPEMLDVANVAGIQVANVGSPDVT  114
            V ILATGGTIA  ++ +         A+  ++L+ AVPE+ D+A +   QVAN+ S ++T
Sbjct  1    VLILATGGTIASRADSSGGAVVP---ALTGEELLAAVPELADIAEIEAEQVANIDSSNMT  57

Query  115  SSLLLHMARTINEVVCDDPTMSGAVITHGTDTLEETAFFLDATV-NCGKPIVVVGAMRPA  173
             +  L +AR I E + D     G V+THGTDTLEETA  L   + N GKP+V+ G+ RP+
Sbjct  58   PADWLRLARRIAEALDDY---DGVVVTHGTDTLEETASALSFMLKNLGKPVVLTGSQRPS  114

Query  174  TAISADGPFNLLQAVTVAAHPTARNRGALVVMNDRIVSAYYVSKTNANTMDTFKAVEMGN  233
               S+DGP NLL A+ VAA P AR  G LVV ND++  A  V+KT+ +++D F +   G 
Sbjct  115  DEPSSDGPMNLLAALRVAASPAARGPGVLVVFNDKLHRARRVTKTHTSSLDAFDSPNFGP  174

Query  234  LGAIISNKPYFFYP  247
            LG +   +   +  
Sbjct  175  LGEVDGGQVELYRE  188


>CDD:465490 pfam17763, Asparaginase_C, Glutaminase/Asparaginase C-terminal 
domain.  This domain is found at the C-terminus of asparaginase 
enzymes.
Length=114

 Score = 96.8 bits (242),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 52/115 (45%), Positives = 65/115 (57%), Gaps = 9/115 (8%)

Query  267  RVDILYSYQDMQNDTLYDAVDNGAKGIVIAGSGAGSVSSGYYDAIDDIASTHSLPVVLST  326
            RVDILY Y  M  + L  A+  GAKGIVIAG GAG+V S   DA+ + A    +PVV S+
Sbjct  1    RVDILYLYPGMDPELLDAALAAGAKGIVIAGFGAGNVPSALLDALKE-AVARGIPVVRSS  59

Query  327  RTGNGEVAITDSET--------TIESGFLNPQKARILLGLLLAEDKGFKEIKEAF  373
            R G+G V +   ET         I  G L P+KARI L L L +    +EI+E F
Sbjct  60   RCGSGRVNLGYYETGRDLLEAGVISGGDLTPEKARIKLMLALGKGLDPEEIRELF  114



Lambda      K        H        a         alpha
   0.316    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00000370

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425828 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18   119     6e-34


>CDD:425828 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18.  
Length=311

 Score = 119 bits (299),  Expect = 6e-34, Method: Composition-based stats.
 Identities = 51/146 (35%), Positives = 71/146 (49%), Gaps = 15/146 (10%)

Query  1    MAYDFSGPWTSETGHQAQLYSPSRDPTGGISCQSAIAYVIAQGVNPKKILLGIPAYGRSF  60
            M YDF G W + TGH A LY       G  +   A+ Y + QGV   K++LG+P YGRS+
Sbjct  177  MTYDFHGSWDNVTGHHAPLYGG-----GSYNVDYAVKYYLKQGVPASKLVLGVPFYGRSW  231

Query  61   LGSNHIGQRYSGCGGEDGVFDYCDLPR----PGAKEYYDEKSGAAWCVGGDGGFVTYDTP  116
               N      SG   EDGV  Y ++       GA   +D+ + A +   GD  F+TYD P
Sbjct  232  TLVNG-----SGNTWEDGVLAYKEICNLLKDNGATVVWDDVAKAPYVYDGDQ-FITYDDP  285

Query  117  ETVQQKAKFATKTKLGGLFYWHIGGD  142
             ++  K  +     LGG+  W +  D
Sbjct  286  RSIATKVDYVKAKGLGGVMIWSLDAD  311



Lambda      K        H        a         alpha
   0.317    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00000371

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425828 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18   119     6e-34


>CDD:425828 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18.  
Length=311

 Score = 119 bits (299),  Expect = 6e-34, Method: Composition-based stats.
 Identities = 51/146 (35%), Positives = 71/146 (49%), Gaps = 15/146 (10%)

Query  1    MAYDFSGPWTSETGHQAQLYSPSRDPTGGISCQSAIAYVIAQGVNPKKILLGIPAYGRSF  60
            M YDF G W + TGH A LY       G  +   A+ Y + QGV   K++LG+P YGRS+
Sbjct  177  MTYDFHGSWDNVTGHHAPLYGG-----GSYNVDYAVKYYLKQGVPASKLVLGVPFYGRSW  231

Query  61   LGSNHIGQRYSGCGGEDGVFDYCDLPR----PGAKEYYDEKSGAAWCVGGDGGFVTYDTP  116
               N      SG   EDGV  Y ++       GA   +D+ + A +   GD  F+TYD P
Sbjct  232  TLVNG-----SGNTWEDGVLAYKEICNLLKDNGATVVWDDVAKAPYVYDGDQ-FITYDDP  285

Query  117  ETVQQKAKFATKTKLGGLFYWHIGGD  142
             ++  K  +     LGG+  W +  D
Sbjct  286  RSIATKVDYVKAKGLGGVMIWSLDAD  311



Lambda      K        H        a         alpha
   0.317    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00000372

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425828 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18   119     6e-34


>CDD:425828 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18.  
Length=311

 Score = 119 bits (299),  Expect = 6e-34, Method: Composition-based stats.
 Identities = 51/146 (35%), Positives = 71/146 (49%), Gaps = 15/146 (10%)

Query  1    MAYDFSGPWTSETGHQAQLYSPSRDPTGGISCQSAIAYVIAQGVNPKKILLGIPAYGRSF  60
            M YDF G W + TGH A LY       G  +   A+ Y + QGV   K++LG+P YGRS+
Sbjct  177  MTYDFHGSWDNVTGHHAPLYGG-----GSYNVDYAVKYYLKQGVPASKLVLGVPFYGRSW  231

Query  61   LGSNHIGQRYSGCGGEDGVFDYCDLPR----PGAKEYYDEKSGAAWCVGGDGGFVTYDTP  116
               N      SG   EDGV  Y ++       GA   +D+ + A +   GD  F+TYD P
Sbjct  232  TLVNG-----SGNTWEDGVLAYKEICNLLKDNGATVVWDDVAKAPYVYDGDQ-FITYDDP  285

Query  117  ETVQQKAKFATKTKLGGLFYWHIGGD  142
             ++  K  +     LGG+  W +  D
Sbjct  286  RSIATKVDYVKAKGLGGVMIWSLDAD  311



Lambda      K        H        a         alpha
   0.317    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00000373

Length=123
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425828 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18   73.6    2e-17


>CDD:425828 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18.  
Length=311

 Score = 73.6 bits (181),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 35/69 (51%), Gaps = 5/69 (7%)

Query  1    MAYDFSGPWTSETGHQAQLYSPSRDPTGGISCQSAIAYVIAQGVNPKKILLGIPAYGRSF  60
            M YDF G W + TGH A LY       G  +   A+ Y + QGV   K++LG+P YGRS+
Sbjct  177  MTYDFHGSWDNVTGHHAPLYGG-----GSYNVDYAVKYYLKQGVPASKLVLGVPFYGRSW  231

Query  61   RGPVQKSIT  69
                    T
Sbjct  232  TLVNGSGNT  240



Lambda      K        H        a         alpha
   0.318    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00000374

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00000375

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00006578

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00006579

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00000376

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00006580

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00000377

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00000378

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00006581

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461524 pfam05021, NPL4, NPL4 family. The HRD4 gene was identi...  589     0.0   
CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding...  298     4e-101


>CDD:461524 pfam05021, NPL4, NPL4 family.  The HRD4 gene was identical to 
NPL4, a gene previously implicated in nuclear transport. Using 
a diverse set of substrates and direct ubiquitination assays, 
analysis revealed that HRD4/NPL4 is required for a poorly 
characterized step in ER-associated degradation after ubiquitination 
of target proteins but before their recognition 
by the 26S proteasome. Npl4p physically associates with Cdc48p 
via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The Cdc48-Ufd1-Npl4 
complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation or even 
more specific processing.
Length=309

 Score = 589 bits (1521),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/314 (64%), Positives = 245/314 (78%), Gaps = 6/314 (2%)

Query  140  RLGFLYGTYEEYTEVPLGIKAVVQAIYEPPQVDEIDGITLHEWPNEKEVDEVARQCGLEK  199
            R G+LYG YEEY EVPLGIKAVV+AIYEPPQ DE+DGITL  W NEK+VDE+AR+ GLE+
Sbjct  1    RFGYLYGRYEEYDEVPLGIKAVVEAIYEPPQHDELDGITLLPWENEKDVDEIARELGLER  60

Query  200  VGVIFTDLLDAGRGDGSVVCKRHIDSYYLSSLEIAFASRMQAKHPKPTKWSRTGRFGSNF  259
            VGVIFTDL DAG GDG+V+CKRH DSY+LSSLE+  A+R+QA+HP PTK+S TGRFGS F
Sbjct  61   VGVIFTDLTDAGAGDGTVLCKRHKDSYFLSSLEVIMAARLQARHPNPTKYSETGRFGSKF  120

Query  260  VTCVLSGDEEGAITVSSYQASISAVEMVRADIIEPSAEPSVMLVQSEDEDTDNKSRYIPE  319
            VTCV+SGD  G I +SSYQ S  A  +VRADIIEPS +PSV  V+       +  RY+PE
Sbjct  121  VTCVVSGDLNGEIDISSYQVSNQAEALVRADIIEPSTDPSVAYVRE-----SSDERYVPE  175

Query  320  VFYRKINEYGVSAQQNAKPSFPVEYLLVTLTHGFPTEASPIFPAST-FPIENREVIGESQ  378
            VFY KINEYG+  ++NAKP+FPVEYLLVTLTHGFP E SP F A+  FPIENRE +GE Q
Sbjct  176  VFYSKINEYGLEVKENAKPAFPVEYLLVTLTHGFPLEPSPTFSANNGFPIENREAMGELQ  235

Query  379  ELRHVAKKLVSHGDPDKAIREVSDFHLLCFLHSLSMFSKEEEALLCRVATTHDPTEGLKL  438
            +L  +AK L S  DP+  +  +S+FHLL +LHSL + SK+EE+LLCR AT  D  + L+L
Sbjct  236  DLSALAKYLKSSADPNDFLEALSNFHLLLYLHSLGILSKDEESLLCRAATQKDTEDLLQL  295

Query  439  LNTPGWATLVTVLQ  452
            + +PGW TLVT+LQ
Sbjct  296  IESPGWQTLVTILQ  309


>CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding region. 
 The HRD4 gene was identical to NPL4, a gene previously implicated 
in nuclear transport. Using a diverse set of substrates 
and direct ubiquitination assays, analysis revealed that 
HRD4/NPL4 is required for a poorly characterized step in ER-associated 
degradation after ubiquitination of target proteins 
but before their recognition by the 26S proteasome. This 
region of the protein contains possibly two zinc binding motifs 
(Bateman A pers. obs.). Npl4p physically associates with 
Cdc48p via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The 
Cdc48-Ufd1-Npl4 complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation 
or even more specific processing.
Length=145

 Score = 298 bits (765),  Expect = 4e-101, Method: Composition-based stats.
 Identities = 97/136 (71%), Positives = 117/136 (86%), Gaps = 0/136 (0%)

Query  2    LDKKDGKIYRPRDPKMCKHGPKGMCDYCMPLEPYDPKYLAEKKIKHLSFHSYMRKVNAST  61
            LDK+DGKI R RDPK+C+HGPKGMCDYC PLEPYD +YL E KIKHLSFH+Y+RK+N+ T
Sbjct  10   LDKQDGKIPRKRDPKLCRHGPKGMCDYCSPLEPYDEEYLKEHKIKHLSFHAYLRKLNSGT  69

Query  62   NKAELKSSFMPPLTEPYYRVRRDCPSGHPPWPEGICTKCQPSAISLQPQEFRMVDHVEFA  121
            NK E  SS++PPL EP Y+V+  CPSGHPPWP+GIC+KCQPSAI+LQ Q FRMVDHVEFA
Sbjct  70   NKKESGSSYIPPLEEPSYKVKPGCPSGHPPWPKGICSKCQPSAITLQRQPFRMVDHVEFA  129

Query  122  SPDLINSLLDFWRKSG  137
            + +++N  LDFWRK+G
Sbjct  130  NSEIVNRFLDFWRKTG  145



Lambda      K        H        a         alpha
   0.316    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00000380

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461524 pfam05021, NPL4, NPL4 family. The HRD4 gene was identi...  589     0.0   
CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding...  315     1e-106


>CDD:461524 pfam05021, NPL4, NPL4 family.  The HRD4 gene was identical to 
NPL4, a gene previously implicated in nuclear transport. Using 
a diverse set of substrates and direct ubiquitination assays, 
analysis revealed that HRD4/NPL4 is required for a poorly 
characterized step in ER-associated degradation after ubiquitination 
of target proteins but before their recognition 
by the 26S proteasome. Npl4p physically associates with Cdc48p 
via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The Cdc48-Ufd1-Npl4 
complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation or even 
more specific processing.
Length=309

 Score = 589 bits (1521),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/314 (64%), Positives = 245/314 (78%), Gaps = 6/314 (2%)

Query  287  RLGFLYGTYEEYTEVPLGIKAVVQAIYEPPQVDEIDGITLHEWPNEKEVDEVARQCGLEK  346
            R G+LYG YEEY EVPLGIKAVV+AIYEPPQ DE+DGITL  W NEK+VDE+AR+ GLE+
Sbjct  1    RFGYLYGRYEEYDEVPLGIKAVVEAIYEPPQHDELDGITLLPWENEKDVDEIARELGLER  60

Query  347  VGVIFTDLLDAGRGDGSVVCKRHIDSYYLSSLEIAFASRMQAKHPKPTKWSRTGRFGSNF  406
            VGVIFTDL DAG GDG+V+CKRH DSY+LSSLE+  A+R+QA+HP PTK+S TGRFGS F
Sbjct  61   VGVIFTDLTDAGAGDGTVLCKRHKDSYFLSSLEVIMAARLQARHPNPTKYSETGRFGSKF  120

Query  407  VTCVLSGDEEGAITVSSYQASISAVEMVRADIIEPSAEPSVMLVQSEDEDTDNKSRYIPE  466
            VTCV+SGD  G I +SSYQ S  A  +VRADIIEPS +PSV  V+       +  RY+PE
Sbjct  121  VTCVVSGDLNGEIDISSYQVSNQAEALVRADIIEPSTDPSVAYVRE-----SSDERYVPE  175

Query  467  VFYRKINEYGVSAQQNAKPSFPVEYLLVTLTHGFPTEASPIFPAST-FPIENREVIGESQ  525
            VFY KINEYG+  ++NAKP+FPVEYLLVTLTHGFP E SP F A+  FPIENRE +GE Q
Sbjct  176  VFYSKINEYGLEVKENAKPAFPVEYLLVTLTHGFPLEPSPTFSANNGFPIENREAMGELQ  235

Query  526  ELRHVAKKLVSHGDPDKAIREVSDFHLLCFLHSLSMFSKEEEALLCRVATTHDPTEGLKL  585
            +L  +AK L S  DP+  +  +S+FHLL +LHSL + SK+EE+LLCR AT  D  + L+L
Sbjct  236  DLSALAKYLKSSADPNDFLEALSNFHLLLYLHSLGILSKDEESLLCRAATQKDTEDLLQL  295

Query  586  LNTPGWATLVTVLQ  599
            + +PGW TLVT+LQ
Sbjct  296  IESPGWQTLVTILQ  309


>CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding region. 
 The HRD4 gene was identical to NPL4, a gene previously implicated 
in nuclear transport. Using a diverse set of substrates 
and direct ubiquitination assays, analysis revealed that 
HRD4/NPL4 is required for a poorly characterized step in ER-associated 
degradation after ubiquitination of target proteins 
but before their recognition by the 26S proteasome. This 
region of the protein contains possibly two zinc binding motifs 
(Bateman A pers. obs.). Npl4p physically associates with 
Cdc48p via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The 
Cdc48-Ufd1-Npl4 complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation 
or even more specific processing.
Length=145

 Score = 315 bits (810),  Expect = 1e-106, Method: Composition-based stats.
 Identities = 101/145 (70%), Positives = 124/145 (86%), Gaps = 0/145 (0%)

Query  140  VQQSPLDDMLDKKDGKIYRPRDPKMCKHGPKGMCDYCMPLEPYDPKYLAEKKIKHLSFHS  199
            V++ P+DD LDK+DGKI R RDPK+C+HGPKGMCDYC PLEPYD +YL E KIKHLSFH+
Sbjct  1    VKEDPVDDYLDKQDGKIPRKRDPKLCRHGPKGMCDYCSPLEPYDEEYLKEHKIKHLSFHA  60

Query  200  YMRKVNASTNKAELKSSFMPPLTEPYYRVRRDCPSGHPPWPEGICTKCQPSAISLQPQEF  259
            Y+RK+N+ TNK E  SS++PPL EP Y+V+  CPSGHPPWP+GIC+KCQPSAI+LQ Q F
Sbjct  61   YLRKLNSGTNKKESGSSYIPPLEEPSYKVKPGCPSGHPPWPKGICSKCQPSAITLQRQPF  120

Query  260  RMVDHVEFASPDLINSLLDFWRKSG  284
            RMVDHVEFA+ +++N  LDFWRK+G
Sbjct  121  RMVDHVEFANSEIVNRFLDFWRKTG  145



Lambda      K        H        a         alpha
   0.316    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 763652708


Query= TCONS_00000379

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461524 pfam05021, NPL4, NPL4 family. The HRD4 gene was identi...  589     0.0   
CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding...  315     1e-106


>CDD:461524 pfam05021, NPL4, NPL4 family.  The HRD4 gene was identical to 
NPL4, a gene previously implicated in nuclear transport. Using 
a diverse set of substrates and direct ubiquitination assays, 
analysis revealed that HRD4/NPL4 is required for a poorly 
characterized step in ER-associated degradation after ubiquitination 
of target proteins but before their recognition 
by the 26S proteasome. Npl4p physically associates with Cdc48p 
via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The Cdc48-Ufd1-Npl4 
complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation or even 
more specific processing.
Length=309

 Score = 589 bits (1521),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/314 (64%), Positives = 245/314 (78%), Gaps = 6/314 (2%)

Query  287  RLGFLYGTYEEYTEVPLGIKAVVQAIYEPPQVDEIDGITLHEWPNEKEVDEVARQCGLEK  346
            R G+LYG YEEY EVPLGIKAVV+AIYEPPQ DE+DGITL  W NEK+VDE+AR+ GLE+
Sbjct  1    RFGYLYGRYEEYDEVPLGIKAVVEAIYEPPQHDELDGITLLPWENEKDVDEIARELGLER  60

Query  347  VGVIFTDLLDAGRGDGSVVCKRHIDSYYLSSLEIAFASRMQAKHPKPTKWSRTGRFGSNF  406
            VGVIFTDL DAG GDG+V+CKRH DSY+LSSLE+  A+R+QA+HP PTK+S TGRFGS F
Sbjct  61   VGVIFTDLTDAGAGDGTVLCKRHKDSYFLSSLEVIMAARLQARHPNPTKYSETGRFGSKF  120

Query  407  VTCVLSGDEEGAITVSSYQASISAVEMVRADIIEPSAEPSVMLVQSEDEDTDNKSRYIPE  466
            VTCV+SGD  G I +SSYQ S  A  +VRADIIEPS +PSV  V+       +  RY+PE
Sbjct  121  VTCVVSGDLNGEIDISSYQVSNQAEALVRADIIEPSTDPSVAYVRE-----SSDERYVPE  175

Query  467  VFYRKINEYGVSAQQNAKPSFPVEYLLVTLTHGFPTEASPIFPAST-FPIENREVIGESQ  525
            VFY KINEYG+  ++NAKP+FPVEYLLVTLTHGFP E SP F A+  FPIENRE +GE Q
Sbjct  176  VFYSKINEYGLEVKENAKPAFPVEYLLVTLTHGFPLEPSPTFSANNGFPIENREAMGELQ  235

Query  526  ELRHVAKKLVSHGDPDKAIREVSDFHLLCFLHSLSMFSKEEEALLCRVATTHDPTEGLKL  585
            +L  +AK L S  DP+  +  +S+FHLL +LHSL + SK+EE+LLCR AT  D  + L+L
Sbjct  236  DLSALAKYLKSSADPNDFLEALSNFHLLLYLHSLGILSKDEESLLCRAATQKDTEDLLQL  295

Query  586  LNTPGWATLVTVLQ  599
            + +PGW TLVT+LQ
Sbjct  296  IESPGWQTLVTILQ  309


>CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding region. 
 The HRD4 gene was identical to NPL4, a gene previously implicated 
in nuclear transport. Using a diverse set of substrates 
and direct ubiquitination assays, analysis revealed that 
HRD4/NPL4 is required for a poorly characterized step in ER-associated 
degradation after ubiquitination of target proteins 
but before their recognition by the 26S proteasome. This 
region of the protein contains possibly two zinc binding motifs 
(Bateman A pers. obs.). Npl4p physically associates with 
Cdc48p via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The 
Cdc48-Ufd1-Npl4 complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation 
or even more specific processing.
Length=145

 Score = 315 bits (810),  Expect = 1e-106, Method: Composition-based stats.
 Identities = 101/145 (70%), Positives = 124/145 (86%), Gaps = 0/145 (0%)

Query  140  VQQSPLDDMLDKKDGKIYRPRDPKMCKHGPKGMCDYCMPLEPYDPKYLAEKKIKHLSFHS  199
            V++ P+DD LDK+DGKI R RDPK+C+HGPKGMCDYC PLEPYD +YL E KIKHLSFH+
Sbjct  1    VKEDPVDDYLDKQDGKIPRKRDPKLCRHGPKGMCDYCSPLEPYDEEYLKEHKIKHLSFHA  60

Query  200  YMRKVNASTNKAELKSSFMPPLTEPYYRVRRDCPSGHPPWPEGICTKCQPSAISLQPQEF  259
            Y+RK+N+ TNK E  SS++PPL EP Y+V+  CPSGHPPWP+GIC+KCQPSAI+LQ Q F
Sbjct  61   YLRKLNSGTNKKESGSSYIPPLEEPSYKVKPGCPSGHPPWPKGICSKCQPSAITLQRQPF  120

Query  260  RMVDHVEFASPDLINSLLDFWRKSG  284
            RMVDHVEFA+ +++N  LDFWRK+G
Sbjct  121  RMVDHVEFANSEIVNRFLDFWRKTG  145



Lambda      K        H        a         alpha
   0.316    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 762158280


Query= TCONS_00000382

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461524 pfam05021, NPL4, NPL4 family. The HRD4 gene was identi...  589     0.0   
CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding...  300     1e-102


>CDD:461524 pfam05021, NPL4, NPL4 family.  The HRD4 gene was identical to 
NPL4, a gene previously implicated in nuclear transport. Using 
a diverse set of substrates and direct ubiquitination assays, 
analysis revealed that HRD4/NPL4 is required for a poorly 
characterized step in ER-associated degradation after ubiquitination 
of target proteins but before their recognition 
by the 26S proteasome. Npl4p physically associates with Cdc48p 
via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The Cdc48-Ufd1-Npl4 
complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation or even 
more specific processing.
Length=309

 Score = 589 bits (1521),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/314 (64%), Positives = 245/314 (78%), Gaps = 6/314 (2%)

Query  140  RLGFLYGTYEEYTEVPLGIKAVVQAIYEPPQVDEIDGITLHEWPNEKEVDEVARQCGLEK  199
            R G+LYG YEEY EVPLGIKAVV+AIYEPPQ DE+DGITL  W NEK+VDE+AR+ GLE+
Sbjct  1    RFGYLYGRYEEYDEVPLGIKAVVEAIYEPPQHDELDGITLLPWENEKDVDEIARELGLER  60

Query  200  VGVIFTDLLDAGRGDGSVVCKRHIDSYYLSSLEIAFASRMQAKHPKPTKWSRTGRFGSNF  259
            VGVIFTDL DAG GDG+V+CKRH DSY+LSSLE+  A+R+QA+HP PTK+S TGRFGS F
Sbjct  61   VGVIFTDLTDAGAGDGTVLCKRHKDSYFLSSLEVIMAARLQARHPNPTKYSETGRFGSKF  120

Query  260  VTCVLSGDEEGAITVSSYQASISAVEMVRADIIEPSAEPSVMLVQSEDEDTDNKSRYIPE  319
            VTCV+SGD  G I +SSYQ S  A  +VRADIIEPS +PSV  V+       +  RY+PE
Sbjct  121  VTCVVSGDLNGEIDISSYQVSNQAEALVRADIIEPSTDPSVAYVRE-----SSDERYVPE  175

Query  320  VFYRKINEYGVSAQQNAKPSFPVEYLLVTLTHGFPTEASPIFPAST-FPIENREVIGESQ  378
            VFY KINEYG+  ++NAKP+FPVEYLLVTLTHGFP E SP F A+  FPIENRE +GE Q
Sbjct  176  VFYSKINEYGLEVKENAKPAFPVEYLLVTLTHGFPLEPSPTFSANNGFPIENREAMGELQ  235

Query  379  ELRHVAKKLVSHGDPDKAIREVSDFHLLCFLHSLSMFSKEEEALLCRVATTHDPTEGLKL  438
            +L  +AK L S  DP+  +  +S+FHLL +LHSL + SK+EE+LLCR AT  D  + L+L
Sbjct  236  DLSALAKYLKSSADPNDFLEALSNFHLLLYLHSLGILSKDEESLLCRAATQKDTEDLLQL  295

Query  439  LNTPGWATLVTVLQ  452
            + +PGW TLVT+LQ
Sbjct  296  IESPGWQTLVTILQ  309


>CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding region. 
 The HRD4 gene was identical to NPL4, a gene previously implicated 
in nuclear transport. Using a diverse set of substrates 
and direct ubiquitination assays, analysis revealed that 
HRD4/NPL4 is required for a poorly characterized step in ER-associated 
degradation after ubiquitination of target proteins 
but before their recognition by the 26S proteasome. This 
region of the protein contains possibly two zinc binding motifs 
(Bateman A pers. obs.). Npl4p physically associates with 
Cdc48p via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The 
Cdc48-Ufd1-Npl4 complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation 
or even more specific processing.
Length=145

 Score = 300 bits (771),  Expect = 1e-102, Method: Composition-based stats.
 Identities = 97/136 (71%), Positives = 117/136 (86%), Gaps = 0/136 (0%)

Query  2    LDKKDGKIYRPRDPKMCKHGPKGMCDYCMPLEPYDPKYLAEKKIKHLSFHSYMRKVNAST  61
            LDK+DGKI R RDPK+C+HGPKGMCDYC PLEPYD +YL E KIKHLSFH+Y+RK+N+ T
Sbjct  10   LDKQDGKIPRKRDPKLCRHGPKGMCDYCSPLEPYDEEYLKEHKIKHLSFHAYLRKLNSGT  69

Query  62   NKAELKSSFMPPLTEPYYRVRRDCPSGHPPWPEGICTKCQPSAISLQPQEFRMVDHVEFA  121
            NK E  SS++PPL EP Y+V+  CPSGHPPWP+GIC+KCQPSAI+LQ Q FRMVDHVEFA
Sbjct  70   NKKESGSSYIPPLEEPSYKVKPGCPSGHPPWPKGICSKCQPSAITLQRQPFRMVDHVEFA  129

Query  122  SPDLINSLLDFWRKSG  137
            + +++N  LDFWRK+G
Sbjct  130  NSEIVNRFLDFWRKTG  145



Lambda      K        H        a         alpha
   0.317    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00000381

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461524 pfam05021, NPL4, NPL4 family. The HRD4 gene was identi...  589     0.0   
CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding...  300     9e-103


>CDD:461524 pfam05021, NPL4, NPL4 family.  The HRD4 gene was identical to 
NPL4, a gene previously implicated in nuclear transport. Using 
a diverse set of substrates and direct ubiquitination assays, 
analysis revealed that HRD4/NPL4 is required for a poorly 
characterized step in ER-associated degradation after ubiquitination 
of target proteins but before their recognition 
by the 26S proteasome. Npl4p physically associates with Cdc48p 
via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The Cdc48-Ufd1-Npl4 
complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation or even 
more specific processing.
Length=309

 Score = 589 bits (1521),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/314 (64%), Positives = 245/314 (78%), Gaps = 6/314 (2%)

Query  140  RLGFLYGTYEEYTEVPLGIKAVVQAIYEPPQVDEIDGITLHEWPNEKEVDEVARQCGLEK  199
            R G+LYG YEEY EVPLGIKAVV+AIYEPPQ DE+DGITL  W NEK+VDE+AR+ GLE+
Sbjct  1    RFGYLYGRYEEYDEVPLGIKAVVEAIYEPPQHDELDGITLLPWENEKDVDEIARELGLER  60

Query  200  VGVIFTDLLDAGRGDGSVVCKRHIDSYYLSSLEIAFASRMQAKHPKPTKWSRTGRFGSNF  259
            VGVIFTDL DAG GDG+V+CKRH DSY+LSSLE+  A+R+QA+HP PTK+S TGRFGS F
Sbjct  61   VGVIFTDLTDAGAGDGTVLCKRHKDSYFLSSLEVIMAARLQARHPNPTKYSETGRFGSKF  120

Query  260  VTCVLSGDEEGAITVSSYQASISAVEMVRADIIEPSAEPSVMLVQSEDEDTDNKSRYIPE  319
            VTCV+SGD  G I +SSYQ S  A  +VRADIIEPS +PSV  V+       +  RY+PE
Sbjct  121  VTCVVSGDLNGEIDISSYQVSNQAEALVRADIIEPSTDPSVAYVRE-----SSDERYVPE  175

Query  320  VFYRKINEYGVSAQQNAKPSFPVEYLLVTLTHGFPTEASPIFPAST-FPIENREVIGESQ  378
            VFY KINEYG+  ++NAKP+FPVEYLLVTLTHGFP E SP F A+  FPIENRE +GE Q
Sbjct  176  VFYSKINEYGLEVKENAKPAFPVEYLLVTLTHGFPLEPSPTFSANNGFPIENREAMGELQ  235

Query  379  ELRHVAKKLVSHGDPDKAIREVSDFHLLCFLHSLSMFSKEEEALLCRVATTHDPTEGLKL  438
            +L  +AK L S  DP+  +  +S+FHLL +LHSL + SK+EE+LLCR AT  D  + L+L
Sbjct  236  DLSALAKYLKSSADPNDFLEALSNFHLLLYLHSLGILSKDEESLLCRAATQKDTEDLLQL  295

Query  439  LNTPGWATLVTVLQ  452
            + +PGW TLVT+LQ
Sbjct  296  IESPGWQTLVTILQ  309


>CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding region. 
 The HRD4 gene was identical to NPL4, a gene previously implicated 
in nuclear transport. Using a diverse set of substrates 
and direct ubiquitination assays, analysis revealed that 
HRD4/NPL4 is required for a poorly characterized step in ER-associated 
degradation after ubiquitination of target proteins 
but before their recognition by the 26S proteasome. This 
region of the protein contains possibly two zinc binding motifs 
(Bateman A pers. obs.). Npl4p physically associates with 
Cdc48p via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The 
Cdc48-Ufd1-Npl4 complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation 
or even more specific processing.
Length=145

 Score = 300 bits (771),  Expect = 9e-103, Method: Composition-based stats.
 Identities = 97/136 (71%), Positives = 117/136 (86%), Gaps = 0/136 (0%)

Query  2    LDKKDGKIYRPRDPKMCKHGPKGMCDYCMPLEPYDPKYLAEKKIKHLSFHSYMRKVNAST  61
            LDK+DGKI R RDPK+C+HGPKGMCDYC PLEPYD +YL E KIKHLSFH+Y+RK+N+ T
Sbjct  10   LDKQDGKIPRKRDPKLCRHGPKGMCDYCSPLEPYDEEYLKEHKIKHLSFHAYLRKLNSGT  69

Query  62   NKAELKSSFMPPLTEPYYRVRRDCPSGHPPWPEGICTKCQPSAISLQPQEFRMVDHVEFA  121
            NK E  SS++PPL EP Y+V+  CPSGHPPWP+GIC+KCQPSAI+LQ Q FRMVDHVEFA
Sbjct  70   NKKESGSSYIPPLEEPSYKVKPGCPSGHPPWPKGICSKCQPSAITLQRQPFRMVDHVEFA  129

Query  122  SPDLINSLLDFWRKSG  137
            + +++N  LDFWRK+G
Sbjct  130  NSEIVNRFLDFWRKTG  145



Lambda      K        H        a         alpha
   0.317    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00000384

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461524 pfam05021, NPL4, NPL4 family. The HRD4 gene was identi...  589     0.0   
CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding...  315     1e-106


>CDD:461524 pfam05021, NPL4, NPL4 family.  The HRD4 gene was identical to 
NPL4, a gene previously implicated in nuclear transport. Using 
a diverse set of substrates and direct ubiquitination assays, 
analysis revealed that HRD4/NPL4 is required for a poorly 
characterized step in ER-associated degradation after ubiquitination 
of target proteins but before their recognition 
by the 26S proteasome. Npl4p physically associates with Cdc48p 
via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The Cdc48-Ufd1-Npl4 
complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation or even 
more specific processing.
Length=309

 Score = 589 bits (1521),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/314 (64%), Positives = 245/314 (78%), Gaps = 6/314 (2%)

Query  287  RLGFLYGTYEEYTEVPLGIKAVVQAIYEPPQVDEIDGITLHEWPNEKEVDEVARQCGLEK  346
            R G+LYG YEEY EVPLGIKAVV+AIYEPPQ DE+DGITL  W NEK+VDE+AR+ GLE+
Sbjct  1    RFGYLYGRYEEYDEVPLGIKAVVEAIYEPPQHDELDGITLLPWENEKDVDEIARELGLER  60

Query  347  VGVIFTDLLDAGRGDGSVVCKRHIDSYYLSSLEIAFASRMQAKHPKPTKWSRTGRFGSNF  406
            VGVIFTDL DAG GDG+V+CKRH DSY+LSSLE+  A+R+QA+HP PTK+S TGRFGS F
Sbjct  61   VGVIFTDLTDAGAGDGTVLCKRHKDSYFLSSLEVIMAARLQARHPNPTKYSETGRFGSKF  120

Query  407  VTCVLSGDEEGAITVSSYQASISAVEMVRADIIEPSAEPSVMLVQSEDEDTDNKSRYIPE  466
            VTCV+SGD  G I +SSYQ S  A  +VRADIIEPS +PSV  V+       +  RY+PE
Sbjct  121  VTCVVSGDLNGEIDISSYQVSNQAEALVRADIIEPSTDPSVAYVRE-----SSDERYVPE  175

Query  467  VFYRKINEYGVSAQQNAKPSFPVEYLLVTLTHGFPTEASPIFPAST-FPIENREVIGESQ  525
            VFY KINEYG+  ++NAKP+FPVEYLLVTLTHGFP E SP F A+  FPIENRE +GE Q
Sbjct  176  VFYSKINEYGLEVKENAKPAFPVEYLLVTLTHGFPLEPSPTFSANNGFPIENREAMGELQ  235

Query  526  ELRHVAKKLVSHGDPDKAIREVSDFHLLCFLHSLSMFSKEEEALLCRVATTHDPTEGLKL  585
            +L  +AK L S  DP+  +  +S+FHLL +LHSL + SK+EE+LLCR AT  D  + L+L
Sbjct  236  DLSALAKYLKSSADPNDFLEALSNFHLLLYLHSLGILSKDEESLLCRAATQKDTEDLLQL  295

Query  586  LNTPGWATLVTVLQ  599
            + +PGW TLVT+LQ
Sbjct  296  IESPGWQTLVTILQ  309


>CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding region. 
 The HRD4 gene was identical to NPL4, a gene previously implicated 
in nuclear transport. Using a diverse set of substrates 
and direct ubiquitination assays, analysis revealed that 
HRD4/NPL4 is required for a poorly characterized step in ER-associated 
degradation after ubiquitination of target proteins 
but before their recognition by the 26S proteasome. This 
region of the protein contains possibly two zinc binding motifs 
(Bateman A pers. obs.). Npl4p physically associates with 
Cdc48p via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The 
Cdc48-Ufd1-Npl4 complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation 
or even more specific processing.
Length=145

 Score = 315 bits (810),  Expect = 1e-106, Method: Composition-based stats.
 Identities = 101/145 (70%), Positives = 124/145 (86%), Gaps = 0/145 (0%)

Query  140  VQQSPLDDMLDKKDGKIYRPRDPKMCKHGPKGMCDYCMPLEPYDPKYLAEKKIKHLSFHS  199
            V++ P+DD LDK+DGKI R RDPK+C+HGPKGMCDYC PLEPYD +YL E KIKHLSFH+
Sbjct  1    VKEDPVDDYLDKQDGKIPRKRDPKLCRHGPKGMCDYCSPLEPYDEEYLKEHKIKHLSFHA  60

Query  200  YMRKVNASTNKAELKSSFMPPLTEPYYRVRRDCPSGHPPWPEGICTKCQPSAISLQPQEF  259
            Y+RK+N+ TNK E  SS++PPL EP Y+V+  CPSGHPPWP+GIC+KCQPSAI+LQ Q F
Sbjct  61   YLRKLNSGTNKKESGSSYIPPLEEPSYKVKPGCPSGHPPWPKGICSKCQPSAITLQRQPF  120

Query  260  RMVDHVEFASPDLINSLLDFWRKSG  284
            RMVDHVEFA+ +++N  LDFWRK+G
Sbjct  121  RMVDHVEFANSEIVNRFLDFWRKTG  145



Lambda      K        H        a         alpha
   0.316    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 762158280


Query= TCONS_00000383

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461524 pfam05021, NPL4, NPL4 family. The HRD4 gene was identi...  589     0.0   
CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding...  315     1e-106


>CDD:461524 pfam05021, NPL4, NPL4 family.  The HRD4 gene was identical to 
NPL4, a gene previously implicated in nuclear transport. Using 
a diverse set of substrates and direct ubiquitination assays, 
analysis revealed that HRD4/NPL4 is required for a poorly 
characterized step in ER-associated degradation after ubiquitination 
of target proteins but before their recognition 
by the 26S proteasome. Npl4p physically associates with Cdc48p 
via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The Cdc48-Ufd1-Npl4 
complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation or even 
more specific processing.
Length=309

 Score = 589 bits (1521),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/314 (64%), Positives = 245/314 (78%), Gaps = 6/314 (2%)

Query  287  RLGFLYGTYEEYTEVPLGIKAVVQAIYEPPQVDEIDGITLHEWPNEKEVDEVARQCGLEK  346
            R G+LYG YEEY EVPLGIKAVV+AIYEPPQ DE+DGITL  W NEK+VDE+AR+ GLE+
Sbjct  1    RFGYLYGRYEEYDEVPLGIKAVVEAIYEPPQHDELDGITLLPWENEKDVDEIARELGLER  60

Query  347  VGVIFTDLLDAGRGDGSVVCKRHIDSYYLSSLEIAFASRMQAKHPKPTKWSRTGRFGSNF  406
            VGVIFTDL DAG GDG+V+CKRH DSY+LSSLE+  A+R+QA+HP PTK+S TGRFGS F
Sbjct  61   VGVIFTDLTDAGAGDGTVLCKRHKDSYFLSSLEVIMAARLQARHPNPTKYSETGRFGSKF  120

Query  407  VTCVLSGDEEGAITVSSYQASISAVEMVRADIIEPSAEPSVMLVQSEDEDTDNKSRYIPE  466
            VTCV+SGD  G I +SSYQ S  A  +VRADIIEPS +PSV  V+       +  RY+PE
Sbjct  121  VTCVVSGDLNGEIDISSYQVSNQAEALVRADIIEPSTDPSVAYVRE-----SSDERYVPE  175

Query  467  VFYRKINEYGVSAQQNAKPSFPVEYLLVTLTHGFPTEASPIFPAST-FPIENREVIGESQ  525
            VFY KINEYG+  ++NAKP+FPVEYLLVTLTHGFP E SP F A+  FPIENRE +GE Q
Sbjct  176  VFYSKINEYGLEVKENAKPAFPVEYLLVTLTHGFPLEPSPTFSANNGFPIENREAMGELQ  235

Query  526  ELRHVAKKLVSHGDPDKAIREVSDFHLLCFLHSLSMFSKEEEALLCRVATTHDPTEGLKL  585
            +L  +AK L S  DP+  +  +S+FHLL +LHSL + SK+EE+LLCR AT  D  + L+L
Sbjct  236  DLSALAKYLKSSADPNDFLEALSNFHLLLYLHSLGILSKDEESLLCRAATQKDTEDLLQL  295

Query  586  LNTPGWATLVTVLQ  599
            + +PGW TLVT+LQ
Sbjct  296  IESPGWQTLVTILQ  309


>CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding region. 
 The HRD4 gene was identical to NPL4, a gene previously implicated 
in nuclear transport. Using a diverse set of substrates 
and direct ubiquitination assays, analysis revealed that 
HRD4/NPL4 is required for a poorly characterized step in ER-associated 
degradation after ubiquitination of target proteins 
but before their recognition by the 26S proteasome. This 
region of the protein contains possibly two zinc binding motifs 
(Bateman A pers. obs.). Npl4p physically associates with 
Cdc48p via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The 
Cdc48-Ufd1-Npl4 complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation 
or even more specific processing.
Length=145

 Score = 315 bits (810),  Expect = 1e-106, Method: Composition-based stats.
 Identities = 101/145 (70%), Positives = 124/145 (86%), Gaps = 0/145 (0%)

Query  140  VQQSPLDDMLDKKDGKIYRPRDPKMCKHGPKGMCDYCMPLEPYDPKYLAEKKIKHLSFHS  199
            V++ P+DD LDK+DGKI R RDPK+C+HGPKGMCDYC PLEPYD +YL E KIKHLSFH+
Sbjct  1    VKEDPVDDYLDKQDGKIPRKRDPKLCRHGPKGMCDYCSPLEPYDEEYLKEHKIKHLSFHA  60

Query  200  YMRKVNASTNKAELKSSFMPPLTEPYYRVRRDCPSGHPPWPEGICTKCQPSAISLQPQEF  259
            Y+RK+N+ TNK E  SS++PPL EP Y+V+  CPSGHPPWP+GIC+KCQPSAI+LQ Q F
Sbjct  61   YLRKLNSGTNKKESGSSYIPPLEEPSYKVKPGCPSGHPPWPKGICSKCQPSAITLQRQPF  120

Query  260  RMVDHVEFASPDLINSLLDFWRKSG  284
            RMVDHVEFA+ +++N  LDFWRK+G
Sbjct  121  RMVDHVEFANSEIVNRFLDFWRKTG  145



Lambda      K        H        a         alpha
   0.316    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 763652708


Query= TCONS_00006582

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461524 pfam05021, NPL4, NPL4 family. The HRD4 gene was identi...  589     0.0   
CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding...  300     1e-102


>CDD:461524 pfam05021, NPL4, NPL4 family.  The HRD4 gene was identical to 
NPL4, a gene previously implicated in nuclear transport. Using 
a diverse set of substrates and direct ubiquitination assays, 
analysis revealed that HRD4/NPL4 is required for a poorly 
characterized step in ER-associated degradation after ubiquitination 
of target proteins but before their recognition 
by the 26S proteasome. Npl4p physically associates with Cdc48p 
via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The Cdc48-Ufd1-Npl4 
complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation or even 
more specific processing.
Length=309

 Score = 589 bits (1521),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/314 (64%), Positives = 245/314 (78%), Gaps = 6/314 (2%)

Query  140  RLGFLYGTYEEYTEVPLGIKAVVQAIYEPPQVDEIDGITLHEWPNEKEVDEVARQCGLEK  199
            R G+LYG YEEY EVPLGIKAVV+AIYEPPQ DE+DGITL  W NEK+VDE+AR+ GLE+
Sbjct  1    RFGYLYGRYEEYDEVPLGIKAVVEAIYEPPQHDELDGITLLPWENEKDVDEIARELGLER  60

Query  200  VGVIFTDLLDAGRGDGSVVCKRHIDSYYLSSLEIAFASRMQAKHPKPTKWSRTGRFGSNF  259
            VGVIFTDL DAG GDG+V+CKRH DSY+LSSLE+  A+R+QA+HP PTK+S TGRFGS F
Sbjct  61   VGVIFTDLTDAGAGDGTVLCKRHKDSYFLSSLEVIMAARLQARHPNPTKYSETGRFGSKF  120

Query  260  VTCVLSGDEEGAITVSSYQASISAVEMVRADIIEPSAEPSVMLVQSEDEDTDNKSRYIPE  319
            VTCV+SGD  G I +SSYQ S  A  +VRADIIEPS +PSV  V+       +  RY+PE
Sbjct  121  VTCVVSGDLNGEIDISSYQVSNQAEALVRADIIEPSTDPSVAYVRE-----SSDERYVPE  175

Query  320  VFYRKINEYGVSAQQNAKPSFPVEYLLVTLTHGFPTEASPIFPAST-FPIENREVIGESQ  378
            VFY KINEYG+  ++NAKP+FPVEYLLVTLTHGFP E SP F A+  FPIENRE +GE Q
Sbjct  176  VFYSKINEYGLEVKENAKPAFPVEYLLVTLTHGFPLEPSPTFSANNGFPIENREAMGELQ  235

Query  379  ELRHVAKKLVSHGDPDKAIREVSDFHLLCFLHSLSMFSKEEEALLCRVATTHDPTEGLKL  438
            +L  +AK L S  DP+  +  +S+FHLL +LHSL + SK+EE+LLCR AT  D  + L+L
Sbjct  236  DLSALAKYLKSSADPNDFLEALSNFHLLLYLHSLGILSKDEESLLCRAATQKDTEDLLQL  295

Query  439  LNTPGWATLVTVLQ  452
            + +PGW TLVT+LQ
Sbjct  296  IESPGWQTLVTILQ  309


>CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding region. 
 The HRD4 gene was identical to NPL4, a gene previously implicated 
in nuclear transport. Using a diverse set of substrates 
and direct ubiquitination assays, analysis revealed that 
HRD4/NPL4 is required for a poorly characterized step in ER-associated 
degradation after ubiquitination of target proteins 
but before their recognition by the 26S proteasome. This 
region of the protein contains possibly two zinc binding motifs 
(Bateman A pers. obs.). Npl4p physically associates with 
Cdc48p via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The 
Cdc48-Ufd1-Npl4 complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation 
or even more specific processing.
Length=145

 Score = 300 bits (771),  Expect = 1e-102, Method: Composition-based stats.
 Identities = 97/136 (71%), Positives = 117/136 (86%), Gaps = 0/136 (0%)

Query  2    LDKKDGKIYRPRDPKMCKHGPKGMCDYCMPLEPYDPKYLAEKKIKHLSFHSYMRKVNAST  61
            LDK+DGKI R RDPK+C+HGPKGMCDYC PLEPYD +YL E KIKHLSFH+Y+RK+N+ T
Sbjct  10   LDKQDGKIPRKRDPKLCRHGPKGMCDYCSPLEPYDEEYLKEHKIKHLSFHAYLRKLNSGT  69

Query  62   NKAELKSSFMPPLTEPYYRVRRDCPSGHPPWPEGICTKCQPSAISLQPQEFRMVDHVEFA  121
            NK E  SS++PPL EP Y+V+  CPSGHPPWP+GIC+KCQPSAI+LQ Q FRMVDHVEFA
Sbjct  70   NKKESGSSYIPPLEEPSYKVKPGCPSGHPPWPKGICSKCQPSAITLQRQPFRMVDHVEFA  129

Query  122  SPDLINSLLDFWRKSG  137
            + +++N  LDFWRK+G
Sbjct  130  NSEIVNRFLDFWRKTG  145



Lambda      K        H        a         alpha
   0.317    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00000385

Length=652
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461524 pfam05021, NPL4, NPL4 family. The HRD4 gene was identi...  589     0.0   
CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding...  313     3e-105


>CDD:461524 pfam05021, NPL4, NPL4 family.  The HRD4 gene was identical to 
NPL4, a gene previously implicated in nuclear transport. Using 
a diverse set of substrates and direct ubiquitination assays, 
analysis revealed that HRD4/NPL4 is required for a poorly 
characterized step in ER-associated degradation after ubiquitination 
of target proteins but before their recognition 
by the 26S proteasome. Npl4p physically associates with Cdc48p 
via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The Cdc48-Ufd1-Npl4 
complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation or even 
more specific processing.
Length=309

 Score = 589 bits (1521),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/314 (64%), Positives = 245/314 (78%), Gaps = 6/314 (2%)

Query  287  RLGFLYGTYEEYTEVPLGIKAVVQAIYEPPQVDEIDGITLHEWPNEKEVDEVARQCGLEK  346
            R G+LYG YEEY EVPLGIKAVV+AIYEPPQ DE+DGITL  W NEK+VDE+AR+ GLE+
Sbjct  1    RFGYLYGRYEEYDEVPLGIKAVVEAIYEPPQHDELDGITLLPWENEKDVDEIARELGLER  60

Query  347  VGVIFTDLLDAGRGDGSVVCKRHIDSYYLSSLEIAFASRMQAKHPKPTKWSRTGRFGSNF  406
            VGVIFTDL DAG GDG+V+CKRH DSY+LSSLE+  A+R+QA+HP PTK+S TGRFGS F
Sbjct  61   VGVIFTDLTDAGAGDGTVLCKRHKDSYFLSSLEVIMAARLQARHPNPTKYSETGRFGSKF  120

Query  407  VTCVLSGDEEGAITVSSYQASISAVEMVRADIIEPSAEPSVMLVQSEDEDTDNKSRYIPE  466
            VTCV+SGD  G I +SSYQ S  A  +VRADIIEPS +PSV  V+       +  RY+PE
Sbjct  121  VTCVVSGDLNGEIDISSYQVSNQAEALVRADIIEPSTDPSVAYVRE-----SSDERYVPE  175

Query  467  VFYRKINEYGVSAQQNAKPSFPVEYLLVTLTHGFPTEASPIFPAST-FPIENREVIGESQ  525
            VFY KINEYG+  ++NAKP+FPVEYLLVTLTHGFP E SP F A+  FPIENRE +GE Q
Sbjct  176  VFYSKINEYGLEVKENAKPAFPVEYLLVTLTHGFPLEPSPTFSANNGFPIENREAMGELQ  235

Query  526  ELRHVAKKLVSHGDPDKAIREVSDFHLLCFLHSLSMFSKEEEALLCRVATTHDPTEGLKL  585
            +L  +AK L S  DP+  +  +S+FHLL +LHSL + SK+EE+LLCR AT  D  + L+L
Sbjct  236  DLSALAKYLKSSADPNDFLEALSNFHLLLYLHSLGILSKDEESLLCRAATQKDTEDLLQL  295

Query  586  LNTPGWATLVTVLQ  599
            + +PGW TLVT+LQ
Sbjct  296  IESPGWQTLVTILQ  309


>CDD:461523 pfam05020, zf-NPL4, NPL4 family, putative zinc binding region. 
 The HRD4 gene was identical to NPL4, a gene previously implicated 
in nuclear transport. Using a diverse set of substrates 
and direct ubiquitination assays, analysis revealed that 
HRD4/NPL4 is required for a poorly characterized step in ER-associated 
degradation after ubiquitination of target proteins 
but before their recognition by the 26S proteasome. This 
region of the protein contains possibly two zinc binding motifs 
(Bateman A pers. obs.). Npl4p physically associates with 
Cdc48p via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The 
Cdc48-Ufd1-Npl4 complex functions in the recognition of several 
polyubiquitin-tagged proteins and facilitates their presentation 
to the 26S proteasome for processive degradation 
or even more specific processing.
Length=145

 Score = 313 bits (805),  Expect = 3e-105, Method: Composition-based stats.
 Identities = 101/145 (70%), Positives = 124/145 (86%), Gaps = 0/145 (0%)

Query  140  VQQSPLDDMLDKKDGKIYRPRDPKMCKHGPKGMCDYCMPLEPYDPKYLAEKKIKHLSFHS  199
            V++ P+DD LDK+DGKI R RDPK+C+HGPKGMCDYC PLEPYD +YL E KIKHLSFH+
Sbjct  1    VKEDPVDDYLDKQDGKIPRKRDPKLCRHGPKGMCDYCSPLEPYDEEYLKEHKIKHLSFHA  60

Query  200  YMRKVNASTNKAELKSSFMPPLTEPYYRVRRDCPSGHPPWPEGICTKCQPSAISLQPQEF  259
            Y+RK+N+ TNK E  SS++PPL EP Y+V+  CPSGHPPWP+GIC+KCQPSAI+LQ Q F
Sbjct  61   YLRKLNSGTNKKESGSSYIPPLEEPSYKVKPGCPSGHPPWPKGICSKCQPSAITLQRQPF  120

Query  260  RMVDHVEFASPDLINSLLDFWRKSG  284
            RMVDHVEFA+ +++N  LDFWRK+G
Sbjct  121  RMVDHVEFANSEIVNRFLDFWRKTG  145



Lambda      K        H        a         alpha
   0.316    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00006583

Length=485


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0767    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00006584

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461220 pfam04193, PQ-loop, PQ loop repeat. Members of this fa...  67.5    2e-15


>CDD:461220 pfam04193, PQ-loop, PQ loop repeat.  Members of this family are 
all membrane bound proteins possessing a pair of repeats 
each spanning two transmembrane helices connected by a loop. 
The PQ motif found on loop 2 is critical for the localization 
of cystinosin to lysosomes. However, the PQ motif appears 
not to be a general lysosome-targeting motif. It is thought 
likely to possess a more general function. Most probably this 
involves a glutamine residue. Family members are membrane 
transporters since two members, cystinosin and PQLC2, transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts 
the substrate-coupled H+ binding site underlying its H+ symport 
mechanism, suggesting that PQ-loop repeats have functional 
significance. It is thus likely that PQ-loop-containing proteins 
act as a family of membrane transporters. Some transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. Others transport lysine and or arginine 
across the lysosomal membrane in order to maintain the acidic 
homoeostasis.
Length=61

 Score = 67.5 bits (166),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  166  VIYALSYVKLIITIVKYVPQAWVNYKRKSTEGWSISQILFDLTGGVFSLLQLVLDSSFQS  225
            +   L Y+ L++ +V Y+PQ   NYKRKSTEG SI  +L  L G +F LL L+L+    S
Sbjct  1    LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  226  D  226
             
Sbjct  61   L  61


 Score = 67.5 bits (166),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 23/61 (38%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  12  LSRLLGWIYMFCWSASFYPQPISNFRRRSTVGLAIDFPTINVLGFVCYTAYTSAFLYSPV  71
           LS +LG+I +  W  S+ PQ I N++R+ST GL+I F  + +LG + Y  Y     + P 
Sbjct  1   LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  72  I  72
           +
Sbjct  61  L  61



Lambda      K        H        a         alpha
   0.326    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00000387

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461220 pfam04193, PQ-loop, PQ loop repeat. Members of this fa...  67.5    2e-15


>CDD:461220 pfam04193, PQ-loop, PQ loop repeat.  Members of this family are 
all membrane bound proteins possessing a pair of repeats 
each spanning two transmembrane helices connected by a loop. 
The PQ motif found on loop 2 is critical for the localization 
of cystinosin to lysosomes. However, the PQ motif appears 
not to be a general lysosome-targeting motif. It is thought 
likely to possess a more general function. Most probably this 
involves a glutamine residue. Family members are membrane 
transporters since two members, cystinosin and PQLC2, transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts 
the substrate-coupled H+ binding site underlying its H+ symport 
mechanism, suggesting that PQ-loop repeats have functional 
significance. It is thus likely that PQ-loop-containing proteins 
act as a family of membrane transporters. Some transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. Others transport lysine and or arginine 
across the lysosomal membrane in order to maintain the acidic 
homoeostasis.
Length=61

 Score = 67.5 bits (166),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  166  VIYALSYVKLIITIVKYVPQAWVNYKRKSTEGWSISQILFDLTGGVFSLLQLVLDSSFQS  225
            +   L Y+ L++ +V Y+PQ   NYKRKSTEG SI  +L  L G +F LL L+L+    S
Sbjct  1    LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  226  D  226
             
Sbjct  61   L  61


 Score = 67.5 bits (166),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 23/61 (38%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  12  LSRLLGWIYMFCWSASFYPQPISNFRRRSTVGLAIDFPTINVLGFVCYTAYTSAFLYSPV  71
           LS +LG+I +  W  S+ PQ I N++R+ST GL+I F  + +LG + Y  Y     + P 
Sbjct  1   LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  72  I  72
           +
Sbjct  61  L  61



Lambda      K        H        a         alpha
   0.326    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00000388

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461220 pfam04193, PQ-loop, PQ loop repeat. Members of this fa...  67.5    2e-15


>CDD:461220 pfam04193, PQ-loop, PQ loop repeat.  Members of this family are 
all membrane bound proteins possessing a pair of repeats 
each spanning two transmembrane helices connected by a loop. 
The PQ motif found on loop 2 is critical for the localization 
of cystinosin to lysosomes. However, the PQ motif appears 
not to be a general lysosome-targeting motif. It is thought 
likely to possess a more general function. Most probably this 
involves a glutamine residue. Family members are membrane 
transporters since two members, cystinosin and PQLC2, transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts 
the substrate-coupled H+ binding site underlying its H+ symport 
mechanism, suggesting that PQ-loop repeats have functional 
significance. It is thus likely that PQ-loop-containing proteins 
act as a family of membrane transporters. Some transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. Others transport lysine and or arginine 
across the lysosomal membrane in order to maintain the acidic 
homoeostasis.
Length=61

 Score = 67.5 bits (166),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  166  VIYALSYVKLIITIVKYVPQAWVNYKRKSTEGWSISQILFDLTGGVFSLLQLVLDSSFQS  225
            +   L Y+ L++ +V Y+PQ   NYKRKSTEG SI  +L  L G +F LL L+L+    S
Sbjct  1    LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  226  D  226
             
Sbjct  61   L  61


 Score = 67.5 bits (166),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 23/61 (38%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  12  LSRLLGWIYMFCWSASFYPQPISNFRRRSTVGLAIDFPTINVLGFVCYTAYTSAFLYSPV  71
           LS +LG+I +  W  S+ PQ I N++R+ST GL+I F  + +LG + Y  Y     + P 
Sbjct  1   LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  72  I  72
           +
Sbjct  61  L  61



Lambda      K        H        a         alpha
   0.326    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00000389

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00006586

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461220 pfam04193, PQ-loop, PQ loop repeat. Members of this fa...  67.5    2e-15


>CDD:461220 pfam04193, PQ-loop, PQ loop repeat.  Members of this family are 
all membrane bound proteins possessing a pair of repeats 
each spanning two transmembrane helices connected by a loop. 
The PQ motif found on loop 2 is critical for the localization 
of cystinosin to lysosomes. However, the PQ motif appears 
not to be a general lysosome-targeting motif. It is thought 
likely to possess a more general function. Most probably this 
involves a glutamine residue. Family members are membrane 
transporters since two members, cystinosin and PQLC2, transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts 
the substrate-coupled H+ binding site underlying its H+ symport 
mechanism, suggesting that PQ-loop repeats have functional 
significance. It is thus likely that PQ-loop-containing proteins 
act as a family of membrane transporters. Some transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. Others transport lysine and or arginine 
across the lysosomal membrane in order to maintain the acidic 
homoeostasis.
Length=61

 Score = 67.5 bits (166),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  166  VIYALSYVKLIITIVKYVPQAWVNYKRKSTEGWSISQILFDLTGGVFSLLQLVLDSSFQS  225
            +   L Y+ L++ +V Y+PQ   NYKRKSTEG SI  +L  L G +F LL L+L+    S
Sbjct  1    LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  226  D  226
             
Sbjct  61   L  61


 Score = 67.5 bits (166),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 23/61 (38%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  12  LSRLLGWIYMFCWSASFYPQPISNFRRRSTVGLAIDFPTINVLGFVCYTAYTSAFLYSPV  71
           LS +LG+I +  W  S+ PQ I N++R+ST GL+I F  + +LG + Y  Y     + P 
Sbjct  1   LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  72  I  72
           +
Sbjct  61  L  61



Lambda      K        H        a         alpha
   0.326    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00006585

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461220 pfam04193, PQ-loop, PQ loop repeat. Members of this fa...  68.3    8e-16


>CDD:461220 pfam04193, PQ-loop, PQ loop repeat.  Members of this family are 
all membrane bound proteins possessing a pair of repeats 
each spanning two transmembrane helices connected by a loop. 
The PQ motif found on loop 2 is critical for the localization 
of cystinosin to lysosomes. However, the PQ motif appears 
not to be a general lysosome-targeting motif. It is thought 
likely to possess a more general function. Most probably this 
involves a glutamine residue. Family members are membrane 
transporters since two members, cystinosin and PQLC2, transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts 
the substrate-coupled H+ binding site underlying its H+ symport 
mechanism, suggesting that PQ-loop repeats have functional 
significance. It is thus likely that PQ-loop-containing proteins 
act as a family of membrane transporters. Some transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. Others transport lysine and or arginine 
across the lysosomal membrane in order to maintain the acidic 
homoeostasis.
Length=61

 Score = 68.3 bits (168),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  146  VIYALSYVKLIITIVKYVPQAWVNYKRKSTEGWSISQILFDLTGGVFSLLQLVLDSSFQS  205
            +   L Y+ L++ +V Y+PQ   NYKRKSTEG SI  +L  L G +F LL L+L+    S
Sbjct  1    LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  206  D  206
             
Sbjct  61   L  61


 Score = 57.1 bits (139),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (55%), Gaps = 0/51 (0%)

Query  2   FCWSASFYPQPISNFRRRSTVGLAIDFPTINVLGFVCYTAYTSAFLYSPVI  52
             W  S+ PQ I N++R+ST GL+I F  + +LG + Y  Y     + P +
Sbjct  11  VLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPSL  61



Lambda      K        H        a         alpha
   0.326    0.140    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00000390

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00006588

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461220 pfam04193, PQ-loop, PQ loop repeat. Members of this fa...  67.5    2e-15


>CDD:461220 pfam04193, PQ-loop, PQ loop repeat.  Members of this family are 
all membrane bound proteins possessing a pair of repeats 
each spanning two transmembrane helices connected by a loop. 
The PQ motif found on loop 2 is critical for the localization 
of cystinosin to lysosomes. However, the PQ motif appears 
not to be a general lysosome-targeting motif. It is thought 
likely to possess a more general function. Most probably this 
involves a glutamine residue. Family members are membrane 
transporters since two members, cystinosin and PQLC2, transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts 
the substrate-coupled H+ binding site underlying its H+ symport 
mechanism, suggesting that PQ-loop repeats have functional 
significance. It is thus likely that PQ-loop-containing proteins 
act as a family of membrane transporters. Some transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. Others transport lysine and or arginine 
across the lysosomal membrane in order to maintain the acidic 
homoeostasis.
Length=61

 Score = 67.5 bits (166),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  166  VIYALSYVKLIITIVKYVPQAWVNYKRKSTEGWSISQILFDLTGGVFSLLQLVLDSSFQS  225
            +   L Y+ L++ +V Y+PQ   NYKRKSTEG SI  +L  L G +F LL L+L+    S
Sbjct  1    LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  226  D  226
             
Sbjct  61   L  61


 Score = 67.5 bits (166),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 23/61 (38%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  12  LSRLLGWIYMFCWSASFYPQPISNFRRRSTVGLAIDFPTINVLGFVCYTAYTSAFLYSPV  71
           LS +LG+I +  W  S+ PQ I N++R+ST GL+I F  + +LG + Y  Y     + P 
Sbjct  1   LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  72  I  72
           +
Sbjct  61  L  61



Lambda      K        H        a         alpha
   0.326    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00006589

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461220 pfam04193, PQ-loop, PQ loop repeat. Members of this fa...  67.5    2e-15


>CDD:461220 pfam04193, PQ-loop, PQ loop repeat.  Members of this family are 
all membrane bound proteins possessing a pair of repeats 
each spanning two transmembrane helices connected by a loop. 
The PQ motif found on loop 2 is critical for the localization 
of cystinosin to lysosomes. However, the PQ motif appears 
not to be a general lysosome-targeting motif. It is thought 
likely to possess a more general function. Most probably this 
involves a glutamine residue. Family members are membrane 
transporters since two members, cystinosin and PQLC2, transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts 
the substrate-coupled H+ binding site underlying its H+ symport 
mechanism, suggesting that PQ-loop repeats have functional 
significance. It is thus likely that PQ-loop-containing proteins 
act as a family of membrane transporters. Some transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. Others transport lysine and or arginine 
across the lysosomal membrane in order to maintain the acidic 
homoeostasis.
Length=61

 Score = 67.5 bits (166),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  166  VIYALSYVKLIITIVKYVPQAWVNYKRKSTEGWSISQILFDLTGGVFSLLQLVLDSSFQS  225
            +   L Y+ L++ +V Y+PQ   NYKRKSTEG SI  +L  L G +F LL L+L+    S
Sbjct  1    LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  226  D  226
             
Sbjct  61   L  61


 Score = 67.5 bits (166),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 23/61 (38%), Positives = 36/61 (59%), Gaps = 0/61 (0%)

Query  12  LSRLLGWIYMFCWSASFYPQPISNFRRRSTVGLAIDFPTINVLGFVCYTAYTSAFLYSPV  71
           LS +LG+I +  W  S+ PQ I N++R+ST GL+I F  + +LG + Y  Y     + P 
Sbjct  1   LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  72  I  72
           +
Sbjct  61  L  61



Lambda      K        H        a         alpha
   0.326    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00000391

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461220 pfam04193, PQ-loop, PQ loop repeat. Members of this fa...  68.3    8e-16


>CDD:461220 pfam04193, PQ-loop, PQ loop repeat.  Members of this family are 
all membrane bound proteins possessing a pair of repeats 
each spanning two transmembrane helices connected by a loop. 
The PQ motif found on loop 2 is critical for the localization 
of cystinosin to lysosomes. However, the PQ motif appears 
not to be a general lysosome-targeting motif. It is thought 
likely to possess a more general function. Most probably this 
involves a glutamine residue. Family members are membrane 
transporters since two members, cystinosin and PQLC2, transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts 
the substrate-coupled H+ binding site underlying its H+ symport 
mechanism, suggesting that PQ-loop repeats have functional 
significance. It is thus likely that PQ-loop-containing proteins 
act as a family of membrane transporters. Some transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. Others transport lysine and or arginine 
across the lysosomal membrane in order to maintain the acidic 
homoeostasis.
Length=61

 Score = 68.3 bits (168),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  146  VIYALSYVKLIITIVKYVPQAWVNYKRKSTEGWSISQILFDLTGGVFSLLQLVLDSSFQS  205
            +   L Y+ L++ +V Y+PQ   NYKRKSTEG SI  +L  L G +F LL L+L+    S
Sbjct  1    LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  206  D  206
             
Sbjct  61   L  61


 Score = 57.1 bits (139),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (55%), Gaps = 0/51 (0%)

Query  2   FCWSASFYPQPISNFRRRSTVGLAIDFPTINVLGFVCYTAYTSAFLYSPVI  52
             W  S+ PQ I N++R+ST GL+I F  + +LG + Y  Y     + P +
Sbjct  11  VLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPSL  61



Lambda      K        H        a         alpha
   0.326    0.140    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00000392

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00006590

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00000393

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00006591

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.344    0.152    0.504    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00006592

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.128    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00006593

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00006594

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00000396

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395562 pfam00692, dUTPase, dUTPase. dUTPase hydrolyzes dUTP t...  173     8e-56


>CDD:395562 pfam00692, dUTPase, dUTPase.  dUTPase hydrolyzes dUTP to dUMP 
and pyrophosphate.
Length=129

 Score = 173 bits (440),  Expect = 8e-56, Method: Composition-based stats.
 Identities = 70/130 (54%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  120  ESAQAPTRGSAFAAGYDLYSAKETVIPAKGKALVDTGLAIAVPEGTYGRVAPRSGLASKH  179
            + A+ PT GS   AGYDLY+  +  +   G  LV T ++I +P+GTYGR+ PRSGLA+K 
Sbjct  1    DEAEIPTPGSPGDAGYDLYAPYDLTVKPGGTVLVPTDISIPLPDGTYGRIFPRSGLAAKG  60

Query  180  FIDTGAGVIDADYRGEVKVLLFNFSDVDFTVKVGDRIAQLVLERIYTPDVMVVEELEESV  239
             I    GVID+DYRGEVKV+LFN    DFT+K GDRIAQL+ E I  P++  VE L+ + 
Sbjct  61   LIVVP-GVIDSDYRGEVKVVLFNLGKSDFTIKKGDRIAQLIFEPILHPELEPVETLDNTD  119

Query  240  RGAGGFGSTG  249
            RG GGFGS+G
Sbjct  120  RGDGGFGSSG  129



Lambda      K        H        a         alpha
   0.313    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00006595

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395562 pfam00692, dUTPase, dUTPase. dUTPase hydrolyzes dUTP t...  144     1e-44


>CDD:395562 pfam00692, dUTPase, dUTPase.  dUTPase hydrolyzes dUTP to dUMP 
and pyrophosphate.
Length=129

 Score = 144 bits (366),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 57/105 (54%), Positives = 73/105 (70%), Gaps = 1/105 (1%)

Query  120  ESAQAPTRGSAFAAGYDLYSAKETVIPAKGKALVDTGLAIAVPEGTYGRVAPRSGLASKH  179
            + A+ PT GS   AGYDLY+  +  +   G  LV T ++I +P+GTYGR+ PRSGLA+K 
Sbjct  1    DEAEIPTPGSPGDAGYDLYAPYDLTVKPGGTVLVPTDISIPLPDGTYGRIFPRSGLAAKG  60

Query  180  FIDTGAGVIDADYRGEVKVLLFNFSDVDFTVKVGDRIAQLVLERV  224
             I    GVID+DYRGEVKV+LFN    DFT+K GDRIAQL+ E +
Sbjct  61   LIVVP-GVIDSDYRGEVKVVLFNLGKSDFTIKKGDRIAQLIFEPI  104



Lambda      K        H        a         alpha
   0.316    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00006596

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395562 pfam00692, dUTPase, dUTPase. dUTPase hydrolyzes dUTP t...  144     1e-44


>CDD:395562 pfam00692, dUTPase, dUTPase.  dUTPase hydrolyzes dUTP to dUMP 
and pyrophosphate.
Length=129

 Score = 144 bits (366),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 57/105 (54%), Positives = 73/105 (70%), Gaps = 1/105 (1%)

Query  120  ESAQAPTRGSAFAAGYDLYSAKETVIPAKGKALVDTGLAIAVPEGTYGRVAPRSGLASKH  179
            + A+ PT GS   AGYDLY+  +  +   G  LV T ++I +P+GTYGR+ PRSGLA+K 
Sbjct  1    DEAEIPTPGSPGDAGYDLYAPYDLTVKPGGTVLVPTDISIPLPDGTYGRIFPRSGLAAKG  60

Query  180  FIDTGAGVIDADYRGEVKVLLFNFSDVDFTVKVGDRIAQLVLERV  224
             I    GVID+DYRGEVKV+LFN    DFT+K GDRIAQL+ E +
Sbjct  61   LIVVP-GVIDSDYRGEVKVVLFNLGKSDFTIKKGDRIAQLIFEPI  104



Lambda      K        H        a         alpha
   0.316    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00000395

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395562 pfam00692, dUTPase, dUTPase. dUTPase hydrolyzes dUTP t...  173     8e-56


>CDD:395562 pfam00692, dUTPase, dUTPase.  dUTPase hydrolyzes dUTP to dUMP 
and pyrophosphate.
Length=129

 Score = 173 bits (440),  Expect = 8e-56, Method: Composition-based stats.
 Identities = 70/130 (54%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  120  ESAQAPTRGSAFAAGYDLYSAKETVIPAKGKALVDTGLAIAVPEGTYGRVAPRSGLASKH  179
            + A+ PT GS   AGYDLY+  +  +   G  LV T ++I +P+GTYGR+ PRSGLA+K 
Sbjct  1    DEAEIPTPGSPGDAGYDLYAPYDLTVKPGGTVLVPTDISIPLPDGTYGRIFPRSGLAAKG  60

Query  180  FIDTGAGVIDADYRGEVKVLLFNFSDVDFTVKVGDRIAQLVLERIYTPDVMVVEELEESV  239
             I    GVID+DYRGEVKV+LFN    DFT+K GDRIAQL+ E I  P++  VE L+ + 
Sbjct  61   LIVVP-GVIDSDYRGEVKVVLFNLGKSDFTIKKGDRIAQLIFEPILHPELEPVETLDNTD  119

Query  240  RGAGGFGSTG  249
            RG GGFGS+G
Sbjct  120  RGDGGFGSSG  129



Lambda      K        H        a         alpha
   0.313    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00000397

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400783 pfam08616, SPA, Stabilization of polarity axis. Yeast ...  177     1e-54


>CDD:400783 pfam08616, SPA, Stabilization of polarity axis.  Yeast AFI1 has 
been shown to interact with the outer plaque of the spindle 
pole body. In Aspergillus nidulans the protein member is 
necessary for stabilization of the polarity axes during septation. 
and in S. cerevisiae it functions as a polarisation-specific 
docking factor.
Length=113

 Score = 177 bits (452),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 66/113 (58%), Positives = 85/113 (75%), Gaps = 1/113 (1%)

Query  117  LHPHLTTNGSYTHPIIVLVNAMLTQKRVIFLGHNRPSGEVAEAVLAACALASGG-ILRGF  175
             H  L   G +T PII+L+NA+LT KR+IFL + R +GEV+E VLA C L SGG +LRGF
Sbjct  1    NHSLLKLLGPFTPPIILLINALLTSKRIIFLSYQRSAGEVSEFVLALCNLISGGFVLRGF  60

Query  176  TRHAFPYTDLTKIDDLLKVPGFIAGVTNPTFANHPEWWDLLCDLPTGRMKISS  228
            T ++FPY DL+K+D L KVPG+IAGVTNP F N  +WWD+LCDL +G +K+S 
Sbjct  61   TNNSFPYVDLSKLDALRKVPGYIAGVTNPIFENQDQWWDVLCDLDSGSVKLSK  113



Lambda      K        H        a         alpha
   0.320    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00000398

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400783 pfam08616, SPA, Stabilization of polarity axis. Yeast ...  177     1e-54


>CDD:400783 pfam08616, SPA, Stabilization of polarity axis.  Yeast AFI1 has 
been shown to interact with the outer plaque of the spindle 
pole body. In Aspergillus nidulans the protein member is 
necessary for stabilization of the polarity axes during septation. 
and in S. cerevisiae it functions as a polarisation-specific 
docking factor.
Length=113

 Score = 177 bits (452),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 66/113 (58%), Positives = 85/113 (75%), Gaps = 1/113 (1%)

Query  117  LHPHLTTNGSYTHPIIVLVNAMLTQKRVIFLGHNRPSGEVAEAVLAACALASGG-ILRGF  175
             H  L   G +T PII+L+NA+LT KR+IFL + R +GEV+E VLA C L SGG +LRGF
Sbjct  1    NHSLLKLLGPFTPPIILLINALLTSKRIIFLSYQRSAGEVSEFVLALCNLISGGFVLRGF  60

Query  176  TRHAFPYTDLTKIDDLLKVPGFIAGVTNPTFANHPEWWDLLCDLPTGRMKISS  228
            T ++FPY DL+K+D L KVPG+IAGVTNP F N  +WWD+LCDL +G +K+S 
Sbjct  61   TNNSFPYVDLSKLDALRKVPGYIAGVTNPIFENQDQWWDVLCDLDSGSVKLSK  113



Lambda      K        H        a         alpha
   0.320    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00000401

Length=311


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00000399

Length=297


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00000400

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  105     2e-27


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 105 bits (265),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 38/128 (30%), Positives = 60/128 (47%), Gaps = 2/128 (2%)

Query  277  YVQGMNVLCAPFLYVARSEVEAFALFHYFMTSE-CPGYIRGAMDGVHRGLRLVDRCLEIV  335
            Y QGMN + AP L V   E +AF  F   + +     +      G+ R L + +  L+  
Sbjct  51   YCQGMNFIAAPLLLVYLDEEDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYVFEELLKKK  110

Query  336  EPKLAAYLFSKGMQAELYAFPSVLTLCACTPPLPEVLHLWDFLFAYGPHLNILCIVAQLI  395
             PKL  +L   G+  +L+A    LTL A   PL  VL +WD+ F  G    +  +   ++
Sbjct  111  LPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRIWDYFFLEGEKFVLFRVALAIL  170

Query  396  RM-RDTIL  402
            +  R+ +L
Sbjct  171  KRFREELL  178



Lambda      K        H        a         alpha
   0.320    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00006597

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  105     2e-27


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 105 bits (265),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 38/128 (30%), Positives = 60/128 (47%), Gaps = 2/128 (2%)

Query  277  YVQGMNVLCAPFLYVARSEVEAFALFHYFMTSE-CPGYIRGAMDGVHRGLRLVDRCLEIV  335
            Y QGMN + AP L V   E +AF  F   + +     +      G+ R L + +  L+  
Sbjct  51   YCQGMNFIAAPLLLVYLDEEDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYVFEELLKKK  110

Query  336  EPKLAAYLFSKGMQAELYAFPSVLTLCACTPPLPEVLHLWDFLFAYGPHLNILCIVAQLI  395
             PKL  +L   G+  +L+A    LTL A   PL  VL +WD+ F  G    +  +   ++
Sbjct  111  LPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRIWDYFFLEGEKFVLFRVALAIL  170

Query  396  RM-RDTIL  402
            +  R+ +L
Sbjct  171  KRFREELL  178



Lambda      K        H        a         alpha
   0.320    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00000402

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00000403

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  105     2e-27


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 105 bits (265),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 38/128 (30%), Positives = 60/128 (47%), Gaps = 2/128 (2%)

Query  277  YVQGMNVLCAPFLYVARSEVEAFALFHYFMTSE-CPGYIRGAMDGVHRGLRLVDRCLEIV  335
            Y QGMN + AP L V   E +AF  F   + +     +      G+ R L + +  L+  
Sbjct  51   YCQGMNFIAAPLLLVYLDEEDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYVFEELLKKK  110

Query  336  EPKLAAYLFSKGMQAELYAFPSVLTLCACTPPLPEVLHLWDFLFAYGPHLNILCIVAQLI  395
             PKL  +L   G+  +L+A    LTL A   PL  VL +WD+ F  G    +  +   ++
Sbjct  111  LPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRIWDYFFLEGEKFVLFRVALAIL  170

Query  396  RM-RDTIL  402
            +  R+ +L
Sbjct  171  KRFREELL  178



Lambda      K        H        a         alpha
   0.320    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00006598

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  105     2e-27


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 105 bits (265),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 38/128 (30%), Positives = 60/128 (47%), Gaps = 2/128 (2%)

Query  277  YVQGMNVLCAPFLYVARSEVEAFALFHYFMTSE-CPGYIRGAMDGVHRGLRLVDRCLEIV  335
            Y QGMN + AP L V   E +AF  F   + +     +      G+ R L + +  L+  
Sbjct  51   YCQGMNFIAAPLLLVYLDEEDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYVFEELLKKK  110

Query  336  EPKLAAYLFSKGMQAELYAFPSVLTLCACTPPLPEVLHLWDFLFAYGPHLNILCIVAQLI  395
             PKL  +L   G+  +L+A    LTL A   PL  VL +WD+ F  G    +  +   ++
Sbjct  111  LPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRIWDYFFLEGEKFVLFRVALAIL  170

Query  396  RM-RDTIL  402
            +  R+ +L
Sbjct  171  KRFREELL  178



Lambda      K        H        a         alpha
   0.320    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00000404

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00006599

Length=333


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00000405

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460101 pfam01182, Glucosamine_iso, Glucosamine-6-phosphate is...  261     5e-89


>CDD:460101 pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase. 
 
Length=222

 Score = 261 bits (670),  Expect = 5e-89, Method: Composition-based stats.
 Identities = 103/238 (43%), Positives = 133/238 (56%), Gaps = 18/238 (8%)

Query  12   PNTDALAPHLRAYVLRCQNSAINRHNTFRVAVSGGSLPAVLAKALLAPSNGSPEDTVRFD  71
            P+ +ALA  L   +     +A+     F +A+SGGS P  L + L      +    + + 
Sbjct  1    PDAEALAQALAERLAEALEAALAERGRFTLALSGGSTPKPLYELL-----AAAPARLDWS  55

Query  72   KWDVFFADERAVPLDHPDSNYRLLKDELLSK--IPAEMGTPKVHPIDADHVNDDTQELAD  129
            +  VF+ DER VP D PDSNY + ++ LLS   IPA      VHPI A     D +E A 
Sbjct  56   RVHVFWGDERCVPPDDPDSNYGMAREALLSHVPIPAS----NVHPIPAS--AADPEEAAA  109

Query  130  LYQEELMRSFAAKDSVKLPVFDLILLGCGPDGHTCSLFPGHKLLREKDAWVAAETNSPKP  189
             Y+ EL       +   LPVFDL+LLG GPDGHT SLFPG   L E D  V A T+SPKP
Sbjct  110  AYEAELRELLPDLE---LPVFDLVLLGMGPDGHTASLFPGSPALEETDRLVVAVTDSPKP  166

Query  190  PPKRITLTLPVVTHAVSIAFVATGAGKKEILKQIFDAEEGRELPSALVNQGAGEKVSW  247
            PP+RITLTLPV+  A  + F+ TGAGK + L++    +    LP+ALV  GAGE   W
Sbjct  167  PPERITLTLPVLNAARRVWFLVTGAGKADALRRALAGDPD-PLPAALVRPGAGE-TVW  222



Lambda      K        H        a         alpha
   0.317    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00000406

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460101 pfam01182, Glucosamine_iso, Glucosamine-6-phosphate is...  261     5e-89


>CDD:460101 pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase. 
 
Length=222

 Score = 261 bits (670),  Expect = 5e-89, Method: Composition-based stats.
 Identities = 103/238 (43%), Positives = 133/238 (56%), Gaps = 18/238 (8%)

Query  12   PNTDALAPHLRAYVLRCQNSAINRHNTFRVAVSGGSLPAVLAKALLAPSNGSPEDTVRFD  71
            P+ +ALA  L   +     +A+     F +A+SGGS P  L + L      +    + + 
Sbjct  1    PDAEALAQALAERLAEALEAALAERGRFTLALSGGSTPKPLYELL-----AAAPARLDWS  55

Query  72   KWDVFFADERAVPLDHPDSNYRLLKDELLSK--IPAEMGTPKVHPIDADHVNDDTQELAD  129
            +  VF+ DER VP D PDSNY + ++ LLS   IPA      VHPI A     D +E A 
Sbjct  56   RVHVFWGDERCVPPDDPDSNYGMAREALLSHVPIPAS----NVHPIPAS--AADPEEAAA  109

Query  130  LYQEELMRSFAAKDSVKLPVFDLILLGCGPDGHTCSLFPGHKLLREKDAWVAAETNSPKP  189
             Y+ EL       +   LPVFDL+LLG GPDGHT SLFPG   L E D  V A T+SPKP
Sbjct  110  AYEAELRELLPDLE---LPVFDLVLLGMGPDGHTASLFPGSPALEETDRLVVAVTDSPKP  166

Query  190  PPKRITLTLPVVTHAVSIAFVATGAGKKEILKQIFDAEEGRELPSALVNQGAGEKVSW  247
            PP+RITLTLPV+  A  + F+ TGAGK + L++    +    LP+ALV  GAGE   W
Sbjct  167  PPERITLTLPVLNAARRVWFLVTGAGKADALRRALAGDPD-PLPAALVRPGAGE-TVW  222



Lambda      K        H        a         alpha
   0.317    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00000407

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460101 pfam01182, Glucosamine_iso, Glucosamine-6-phosphate is...  261     5e-89


>CDD:460101 pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase. 
 
Length=222

 Score = 261 bits (670),  Expect = 5e-89, Method: Composition-based stats.
 Identities = 103/238 (43%), Positives = 133/238 (56%), Gaps = 18/238 (8%)

Query  12   PNTDALAPHLRAYVLRCQNSAINRHNTFRVAVSGGSLPAVLAKALLAPSNGSPEDTVRFD  71
            P+ +ALA  L   +     +A+     F +A+SGGS P  L + L      +    + + 
Sbjct  1    PDAEALAQALAERLAEALEAALAERGRFTLALSGGSTPKPLYELL-----AAAPARLDWS  55

Query  72   KWDVFFADERAVPLDHPDSNYRLLKDELLSK--IPAEMGTPKVHPIDADHVNDDTQELAD  129
            +  VF+ DER VP D PDSNY + ++ LLS   IPA      VHPI A     D +E A 
Sbjct  56   RVHVFWGDERCVPPDDPDSNYGMAREALLSHVPIPAS----NVHPIPAS--AADPEEAAA  109

Query  130  LYQEELMRSFAAKDSVKLPVFDLILLGCGPDGHTCSLFPGHKLLREKDAWVAAETNSPKP  189
             Y+ EL       +   LPVFDL+LLG GPDGHT SLFPG   L E D  V A T+SPKP
Sbjct  110  AYEAELRELLPDLE---LPVFDLVLLGMGPDGHTASLFPGSPALEETDRLVVAVTDSPKP  166

Query  190  PPKRITLTLPVVTHAVSIAFVATGAGKKEILKQIFDAEEGRELPSALVNQGAGEKVSW  247
            PP+RITLTLPV+  A  + F+ TGAGK + L++    +    LP+ALV  GAGE   W
Sbjct  167  PPERITLTLPVLNAARRVWFLVTGAGKADALRRALAGDPD-PLPAALVRPGAGE-TVW  222



Lambda      K        H        a         alpha
   0.317    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00000408

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00000409

Length=1102


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1403219190


Query= TCONS_00006601

Length=418


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0767    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00000410

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460101 pfam01182, Glucosamine_iso, Glucosamine-6-phosphate is...  261     5e-89


>CDD:460101 pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase. 
 
Length=222

 Score = 261 bits (670),  Expect = 5e-89, Method: Composition-based stats.
 Identities = 103/238 (43%), Positives = 133/238 (56%), Gaps = 18/238 (8%)

Query  12   PNTDALAPHLRAYVLRCQNSAINRHNTFRVAVSGGSLPAVLAKALLAPSNGSPEDTVRFD  71
            P+ +ALA  L   +     +A+     F +A+SGGS P  L + L      +    + + 
Sbjct  1    PDAEALAQALAERLAEALEAALAERGRFTLALSGGSTPKPLYELL-----AAAPARLDWS  55

Query  72   KWDVFFADERAVPLDHPDSNYRLLKDELLSK--IPAEMGTPKVHPIDADHVNDDTQELAD  129
            +  VF+ DER VP D PDSNY + ++ LLS   IPA      VHPI A     D +E A 
Sbjct  56   RVHVFWGDERCVPPDDPDSNYGMAREALLSHVPIPAS----NVHPIPAS--AADPEEAAA  109

Query  130  LYQEELMRSFAAKDSVKLPVFDLILLGCGPDGHTCSLFPGHKLLREKDAWVAAETNSPKP  189
             Y+ EL       +   LPVFDL+LLG GPDGHT SLFPG   L E D  V A T+SPKP
Sbjct  110  AYEAELRELLPDLE---LPVFDLVLLGMGPDGHTASLFPGSPALEETDRLVVAVTDSPKP  166

Query  190  PPKRITLTLPVVTHAVSIAFVATGAGKKEILKQIFDAEEGRELPSALVNQGAGEKVSW  247
            PP+RITLTLPV+  A  + F+ TGAGK + L++    +    LP+ALV  GAGE   W
Sbjct  167  PPERITLTLPVLNAARRVWFLVTGAGKADALRRALAGDPD-PLPAALVRPGAGE-TVW  222



Lambda      K        H        a         alpha
   0.317    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00000411

Length=1033


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1326675812


Query= TCONS_00000412

Length=608


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 771124848


Query= TCONS_00000413

Length=1102


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1403219190


Query= TCONS_00000414

Length=881
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397128 pfam02847, MA3, MA3 domain. Domain in DAP-5, eIF4G, MA...  104     5e-27


>CDD:397128 pfam02847, MA3, MA3 domain.  Domain in DAP-5, eIF4G, MA-3 and 
other proteins. Highly alpha-helical. May contain repeats and/or 
regions similar to MIF4G domains.
Length=113

 Score = 104 bits (261),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 35/113 (31%), Positives = 60/113 (53%), Gaps = 8/113 (7%)

Query  428  LRRTIYLTIMSSI---DFEECCHKLMKISLPPGLEPELPSMIIECCSQE-RTYSKFYGLI  483
            L+R I+L +   +   D++E    L+K+ LP     E+  ++IEC  +E +TY +FYGL+
Sbjct  1    LKRKIFLILEEYLSSGDYDEAARCLLKLGLP-SQHHEVVKVLIECALEESKTYREFYGLL  59

Query  484  GERFAKINRLWSDLFEAAFAKYYDTIHRYET---NRLRNIARFFGHMLSTDAI  533
             ER  + N + +  FE  F +  + +   E    N  RN+A F   ++S D +
Sbjct  60   LERLCEFNLISTKQFEKGFWRVLEDLEDLELDIPNAWRNLAEFVARLISDDGL  112



Lambda      K        H        a         alpha
   0.316    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1128314004


Query= TCONS_00006602

Length=1058


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1362072712


Query= TCONS_00000415

Length=1033


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1326675812


Query= TCONS_00006604

Length=989


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1264377268


Query= TCONS_00006605

Length=1084


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1378086906


Query= TCONS_00006606

Length=1102


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1403219190


Query= TCONS_00006607

Length=1058


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1362072712


Query= TCONS_00000416

Length=1121


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 1429747712


Query= TCONS_00006608

Length=881
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397128 pfam02847, MA3, MA3 domain. Domain in DAP-5, eIF4G, MA...  104     5e-27


>CDD:397128 pfam02847, MA3, MA3 domain.  Domain in DAP-5, eIF4G, MA-3 and 
other proteins. Highly alpha-helical. May contain repeats and/or 
regions similar to MIF4G domains.
Length=113

 Score = 104 bits (261),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 35/113 (31%), Positives = 60/113 (53%), Gaps = 8/113 (7%)

Query  428  LRRTIYLTIMSSI---DFEECCHKLMKISLPPGLEPELPSMIIECCSQE-RTYSKFYGLI  483
            L+R I+L +   +   D++E    L+K+ LP     E+  ++IEC  +E +TY +FYGL+
Sbjct  1    LKRKIFLILEEYLSSGDYDEAARCLLKLGLP-SQHHEVVKVLIECALEESKTYREFYGLL  59

Query  484  GERFAKINRLWSDLFEAAFAKYYDTIHRYET---NRLRNIARFFGHMLSTDAI  533
             ER  + N + +  FE  F +  + +   E    N  RN+A F   ++S D +
Sbjct  60   LERLCEFNLISTKQFEKGFWRVLEDLEDLELDIPNAWRNLAEFVARLISDDGL  112



Lambda      K        H        a         alpha
   0.316    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1128314004


Query= TCONS_00006609

Length=881
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397128 pfam02847, MA3, MA3 domain. Domain in DAP-5, eIF4G, MA...  104     5e-27


>CDD:397128 pfam02847, MA3, MA3 domain.  Domain in DAP-5, eIF4G, MA-3 and 
other proteins. Highly alpha-helical. May contain repeats and/or 
regions similar to MIF4G domains.
Length=113

 Score = 104 bits (261),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 35/113 (31%), Positives = 60/113 (53%), Gaps = 8/113 (7%)

Query  428  LRRTIYLTIMSSI---DFEECCHKLMKISLPPGLEPELPSMIIECCSQE-RTYSKFYGLI  483
            L+R I+L +   +   D++E    L+K+ LP     E+  ++IEC  +E +TY +FYGL+
Sbjct  1    LKRKIFLILEEYLSSGDYDEAARCLLKLGLP-SQHHEVVKVLIECALEESKTYREFYGLL  59

Query  484  GERFAKINRLWSDLFEAAFAKYYDTIHRYET---NRLRNIARFFGHMLSTDAI  533
             ER  + N + +  FE  F +  + +   E    N  RN+A F   ++S D +
Sbjct  60   LERLCEFNLISTKQFEKGFWRVLEDLEDLELDIPNAWRNLAEFVARLISDDGL  112



Lambda      K        H        a         alpha
   0.316    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1128314004


Query= TCONS_00000417

Length=881
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397128 pfam02847, MA3, MA3 domain. Domain in DAP-5, eIF4G, MA...  104     5e-27


>CDD:397128 pfam02847, MA3, MA3 domain.  Domain in DAP-5, eIF4G, MA-3 and 
other proteins. Highly alpha-helical. May contain repeats and/or 
regions similar to MIF4G domains.
Length=113

 Score = 104 bits (261),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 35/113 (31%), Positives = 60/113 (53%), Gaps = 8/113 (7%)

Query  428  LRRTIYLTIMSSI---DFEECCHKLMKISLPPGLEPELPSMIIECCSQE-RTYSKFYGLI  483
            L+R I+L +   +   D++E    L+K+ LP     E+  ++IEC  +E +TY +FYGL+
Sbjct  1    LKRKIFLILEEYLSSGDYDEAARCLLKLGLP-SQHHEVVKVLIECALEESKTYREFYGLL  59

Query  484  GERFAKINRLWSDLFEAAFAKYYDTIHRYET---NRLRNIARFFGHMLSTDAI  533
             ER  + N + +  FE  F +  + +   E    N  RN+A F   ++S D +
Sbjct  60   LERLCEFNLISTKQFEKGFWRVLEDLEDLELDIPNAWRNLAEFVARLISDDGL  112



Lambda      K        H        a         alpha
   0.316    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1128314004


Query= TCONS_00006610

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.124    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00000418

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00006611

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res su...  96.2    1e-23
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  81.9    1e-18


>CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res subunit. 
 
Length=162

 Score = 96.2 bits (240),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query  300  KTRDYQ--------FNIAQRGLFHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVA  351
            + R YQ         +I         L+ + TG GKT  AA ++   ++     +++F+ 
Sbjct  3    ELRPYQIEAIENLLESIKNG--QKRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVLFLV  60

Query  352  PTKPLVAQQISACFQVAGIPRSETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSG  411
            P K L+ Q +    +          +++G+       E     ++   T Q+L   L+  
Sbjct  61   PRKDLLEQALEEFKKFLPNYVEIGEIISGDKKD----ESVDDNKIVVTTIQSLYKALELA  116

Query  412  I--ADPKRIVLLVVDEAHRATGGYAYVEVVKFLKRYNKSFRVLALTATP  458
                 P    ++++DEAHR+    +Y  +++    Y K   +L LTATP
Sbjct  117  SLELLPDFFDVIIIDEAHRSGAS-SYRNILE----YFKPAFLLGLTATP  160


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 81.9 bits (203),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 41/153 (27%), Positives = 66/153 (43%), Gaps = 4/153 (3%)

Query  315  HNLLVALPTGLGKTFIAATIMLNWYRWTKSA-QIIFVAPTKPLVAQQISACFQVAGIPRS  373
             ++LV  PTG GKT       L       +  Q + +APT+ L  Q      ++      
Sbjct  15   RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYEELKKLGKGLGL  74

Query  374  ETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSGIADPKRIVLLVVDEAHRATGGY  433
            +   L G  +   + E+ K   +   TP  L+ DL       K + LLV+DEAHR     
Sbjct  75   KVASLLGGDSRKEQLEKLKGPDILVGTPGRLL-DLLQERKLLKNLKLLVLDEAHR-LLDM  132

Query  434  AYVEVVKF-LKRYNKSFRVLALTATPGSTVESV  465
             +   ++  L+R  K  ++L L+AT    +E +
Sbjct  133  GFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165



Lambda      K        H        a         alpha
   0.316    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 845054670


Query= TCONS_00000419

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.139    0.530    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00000420

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00000421

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00000422

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.137    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00006612

Length=998
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res su...  96.2    1e-23
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  88.4    2e-21
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  81.9    2e-18


>CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res subunit. 
 
Length=162

 Score = 96.2 bits (240),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query  185  KTRDYQ--------FNIAQRGLFHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVA  236
            + R YQ         +I         L+ + TG GKT  AA ++   ++     +++F+ 
Sbjct  3    ELRPYQIEAIENLLESIKNG--QKRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVLFLV  60

Query  237  PTKPLVAQQISACFQVAGIPRSETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSG  296
            P K L+ Q +    +          +++G+       E     ++   T Q+L   L+  
Sbjct  61   PRKDLLEQALEEFKKFLPNYVEIGEIISGDKKD----ESVDDNKIVVTTIQSLYKALELA  116

Query  297  I--ADPKRIVLLVVDEAHRATGGYAYVEVVKFLKRYNKSFRVLALTATP  343
                 P    ++++DEAHR+    +Y  +++    Y K   +L LTATP
Sbjct  117  SLELLPDFFDVIIIDEAHRSGAS-SYRNILE----YFKPAFLLGLTATP  160


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 88.4 bits (220),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 31/108 (29%), Positives = 56/108 (52%), Gaps = 11/108 (10%)

Query  553  QSQSATRIMIFVHFRDSAEEVVRVLKRHEPLIRPHVFVGQSSAKGSEGMDQKTQLSIVQK  612
            + +   +++IF   + + E    +L   E         G   A+    + Q+ +  I++ 
Sbjct  11   KKERGGKVLIFSQTKKTLEA--ELLLEKE---------GIKVARLHGDLSQEEREEILED  59

Query  613  FKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGR  660
            F+KG  + +VAT + E GLD+ +VDL++ YD   +P   +QR+GR GR
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGR  107


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 81.9 bits (203),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 41/153 (27%), Positives = 66/153 (43%), Gaps = 4/153 (3%)

Query  200  HNLLVALPTGLGKTFIAATIMLNWYRWTKSA-QIIFVAPTKPLVAQQISACFQVAGIPRS  258
             ++LV  PTG GKT       L       +  Q + +APT+ L  Q      ++      
Sbjct  15   RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYEELKKLGKGLGL  74

Query  259  ETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSGIADPKRIVLLVVDEAHRATGGY  318
            +   L G  +   + E+ K   +   TP  L+ DL       K + LLV+DEAHR     
Sbjct  75   KVASLLGGDSRKEQLEKLKGPDILVGTPGRLL-DLLQERKLLKNLKLLVLDEAHR-LLDM  132

Query  319  AYVEVVKF-LKRYNKSFRVLALTATPGSTVESV  350
             +   ++  L+R  K  ++L L+AT    +E +
Sbjct  133  GFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165



Lambda      K        H        a         alpha
   0.316    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1277120152


Query= TCONS_00000424

Length=1113
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res su...  96.6    1e-23
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  88.4    2e-21
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  81.9    2e-18


>CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res subunit. 
 
Length=162

 Score = 96.6 bits (241),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query  300  KTRDYQ--------FNIAQRGLFHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVA  351
            + R YQ         +I         L+ + TG GKT  AA ++   ++     +++F+ 
Sbjct  3    ELRPYQIEAIENLLESIKNG--QKRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVLFLV  60

Query  352  PTKPLVAQQISACFQVAGIPRSETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSG  411
            P K L+ Q +    +          +++G+       E     ++   T Q+L   L+  
Sbjct  61   PRKDLLEQALEEFKKFLPNYVEIGEIISGDKKD----ESVDDNKIVVTTIQSLYKALELA  116

Query  412  I--ADPKRIVLLVVDEAHRATGGYAYVEVVKFLKRYNKSFRVLALTATP  458
                 P    ++++DEAHR+    +Y  +++    Y K   +L LTATP
Sbjct  117  SLELLPDFFDVIIIDEAHRSGAS-SYRNILE----YFKPAFLLGLTATP  160


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 88.4 bits (220),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 31/108 (29%), Positives = 56/108 (52%), Gaps = 11/108 (10%)

Query  668  QSQSATRIMIFVHFRDSAEEVVRVLKRHEPLIRPHVFVGQSSAKGSEGMDQKTQLSIVQK  727
            + +   +++IF   + + E    +L   E         G   A+    + Q+ +  I++ 
Sbjct  11   KKERGGKVLIFSQTKKTLEA--ELLLEKE---------GIKVARLHGDLSQEEREEILED  59

Query  728  FKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGR  775
            F+KG  + +VAT + E GLD+ +VDL++ YD   +P   +QR+GR GR
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGR  107


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 81.9 bits (203),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 41/153 (27%), Positives = 66/153 (43%), Gaps = 4/153 (3%)

Query  315  HNLLVALPTGLGKTFIAATIMLNWYRWTKSA-QIIFVAPTKPLVAQQISACFQVAGIPRS  373
             ++LV  PTG GKT       L       +  Q + +APT+ L  Q      ++      
Sbjct  15   RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYEELKKLGKGLGL  74

Query  374  ETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSGIADPKRIVLLVVDEAHRATGGY  433
            +   L G  +   + E+ K   +   TP  L+ DL       K + LLV+DEAHR     
Sbjct  75   KVASLLGGDSRKEQLEKLKGPDILVGTPGRLL-DLLQERKLLKNLKLLVLDEAHR-LLDM  132

Query  434  AYVEVVKF-LKRYNKSFRVLALTATPGSTVESV  465
             +   ++  L+R  K  ++L L+AT    +E +
Sbjct  133  GFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165



Lambda      K        H        a         alpha
   0.316    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1418577808


Query= TCONS_00000423

Length=1113
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res su...  96.6    1e-23
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  88.4    2e-21
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  81.9    2e-18


>CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res subunit. 
 
Length=162

 Score = 96.6 bits (241),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query  300  KTRDYQ--------FNIAQRGLFHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVA  351
            + R YQ         +I         L+ + TG GKT  AA ++   ++     +++F+ 
Sbjct  3    ELRPYQIEAIENLLESIKNG--QKRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVLFLV  60

Query  352  PTKPLVAQQISACFQVAGIPRSETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSG  411
            P K L+ Q +    +          +++G+       E     ++   T Q+L   L+  
Sbjct  61   PRKDLLEQALEEFKKFLPNYVEIGEIISGDKKD----ESVDDNKIVVTTIQSLYKALELA  116

Query  412  I--ADPKRIVLLVVDEAHRATGGYAYVEVVKFLKRYNKSFRVLALTATP  458
                 P    ++++DEAHR+    +Y  +++    Y K   +L LTATP
Sbjct  117  SLELLPDFFDVIIIDEAHRSGAS-SYRNILE----YFKPAFLLGLTATP  160


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 88.4 bits (220),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 31/108 (29%), Positives = 56/108 (52%), Gaps = 11/108 (10%)

Query  668  QSQSATRIMIFVHFRDSAEEVVRVLKRHEPLIRPHVFVGQSSAKGSEGMDQKTQLSIVQK  727
            + +   +++IF   + + E    +L   E         G   A+    + Q+ +  I++ 
Sbjct  11   KKERGGKVLIFSQTKKTLEA--ELLLEKE---------GIKVARLHGDLSQEEREEILED  59

Query  728  FKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGR  775
            F+KG  + +VAT + E GLD+ +VDL++ YD   +P   +QR+GR GR
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGR  107


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 81.9 bits (203),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 41/153 (27%), Positives = 66/153 (43%), Gaps = 4/153 (3%)

Query  315  HNLLVALPTGLGKTFIAATIMLNWYRWTKSA-QIIFVAPTKPLVAQQISACFQVAGIPRS  373
             ++LV  PTG GKT       L       +  Q + +APT+ L  Q      ++      
Sbjct  15   RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYEELKKLGKGLGL  74

Query  374  ETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSGIADPKRIVLLVVDEAHRATGGY  433
            +   L G  +   + E+ K   +   TP  L+ DL       K + LLV+DEAHR     
Sbjct  75   KVASLLGGDSRKEQLEKLKGPDILVGTPGRLL-DLLQERKLLKNLKLLVLDEAHR-LLDM  132

Query  434  AYVEVVKF-LKRYNKSFRVLALTATPGSTVESV  465
             +   ++  L+R  K  ++L L+AT    +E +
Sbjct  133  GFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165



Lambda      K        H        a         alpha
   0.316    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1418577808


Query= TCONS_00000426

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00000425

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.137    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00000427

Length=1113
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res su...  96.6    1e-23
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  88.4    2e-21
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  81.9    2e-18


>CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res subunit. 
 
Length=162

 Score = 96.6 bits (241),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query  300  KTRDYQ--------FNIAQRGLFHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVA  351
            + R YQ         +I         L+ + TG GKT  AA ++   ++     +++F+ 
Sbjct  3    ELRPYQIEAIENLLESIKNG--QKRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVLFLV  60

Query  352  PTKPLVAQQISACFQVAGIPRSETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSG  411
            P K L+ Q +    +          +++G+       E     ++   T Q+L   L+  
Sbjct  61   PRKDLLEQALEEFKKFLPNYVEIGEIISGDKKD----ESVDDNKIVVTTIQSLYKALELA  116

Query  412  I--ADPKRIVLLVVDEAHRATGGYAYVEVVKFLKRYNKSFRVLALTATP  458
                 P    ++++DEAHR+    +Y  +++    Y K   +L LTATP
Sbjct  117  SLELLPDFFDVIIIDEAHRSGAS-SYRNILE----YFKPAFLLGLTATP  160


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 88.4 bits (220),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 31/108 (29%), Positives = 56/108 (52%), Gaps = 11/108 (10%)

Query  668  QSQSATRIMIFVHFRDSAEEVVRVLKRHEPLIRPHVFVGQSSAKGSEGMDQKTQLSIVQK  727
            + +   +++IF   + + E    +L   E         G   A+    + Q+ +  I++ 
Sbjct  11   KKERGGKVLIFSQTKKTLEA--ELLLEKE---------GIKVARLHGDLSQEEREEILED  59

Query  728  FKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGR  775
            F+KG  + +VAT + E GLD+ +VDL++ YD   +P   +QR+GR GR
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGR  107


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 81.9 bits (203),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 41/153 (27%), Positives = 66/153 (43%), Gaps = 4/153 (3%)

Query  315  HNLLVALPTGLGKTFIAATIMLNWYRWTKSA-QIIFVAPTKPLVAQQISACFQVAGIPRS  373
             ++LV  PTG GKT       L       +  Q + +APT+ L  Q      ++      
Sbjct  15   RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYEELKKLGKGLGL  74

Query  374  ETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSGIADPKRIVLLVVDEAHRATGGY  433
            +   L G  +   + E+ K   +   TP  L+ DL       K + LLV+DEAHR     
Sbjct  75   KVASLLGGDSRKEQLEKLKGPDILVGTPGRLL-DLLQERKLLKNLKLLVLDEAHR-LLDM  132

Query  434  AYVEVVKF-LKRYNKSFRVLALTATPGSTVESV  465
             +   ++  L+R  K  ++L L+AT    +E +
Sbjct  133  GFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165



Lambda      K        H        a         alpha
   0.316    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1418577808


Query= TCONS_00000428

Length=1113
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res su...  96.6    1e-23
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  88.4    2e-21
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  81.9    2e-18


>CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res subunit. 
 
Length=162

 Score = 96.6 bits (241),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query  300  KTRDYQ--------FNIAQRGLFHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVA  351
            + R YQ         +I         L+ + TG GKT  AA ++   ++     +++F+ 
Sbjct  3    ELRPYQIEAIENLLESIKNG--QKRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVLFLV  60

Query  352  PTKPLVAQQISACFQVAGIPRSETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSG  411
            P K L+ Q +    +          +++G+       E     ++   T Q+L   L+  
Sbjct  61   PRKDLLEQALEEFKKFLPNYVEIGEIISGDKKD----ESVDDNKIVVTTIQSLYKALELA  116

Query  412  I--ADPKRIVLLVVDEAHRATGGYAYVEVVKFLKRYNKSFRVLALTATP  458
                 P    ++++DEAHR+    +Y  +++    Y K   +L LTATP
Sbjct  117  SLELLPDFFDVIIIDEAHRSGAS-SYRNILE----YFKPAFLLGLTATP  160


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 88.4 bits (220),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 31/108 (29%), Positives = 56/108 (52%), Gaps = 11/108 (10%)

Query  668  QSQSATRIMIFVHFRDSAEEVVRVLKRHEPLIRPHVFVGQSSAKGSEGMDQKTQLSIVQK  727
            + +   +++IF   + + E    +L   E         G   A+    + Q+ +  I++ 
Sbjct  11   KKERGGKVLIFSQTKKTLEA--ELLLEKE---------GIKVARLHGDLSQEEREEILED  59

Query  728  FKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGR  775
            F+KG  + +VAT + E GLD+ +VDL++ YD   +P   +QR+GR GR
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGR  107


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 81.9 bits (203),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 41/153 (27%), Positives = 66/153 (43%), Gaps = 4/153 (3%)

Query  315  HNLLVALPTGLGKTFIAATIMLNWYRWTKSA-QIIFVAPTKPLVAQQISACFQVAGIPRS  373
             ++LV  PTG GKT       L       +  Q + +APT+ L  Q      ++      
Sbjct  15   RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYEELKKLGKGLGL  74

Query  374  ETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSGIADPKRIVLLVVDEAHRATGGY  433
            +   L G  +   + E+ K   +   TP  L+ DL       K + LLV+DEAHR     
Sbjct  75   KVASLLGGDSRKEQLEKLKGPDILVGTPGRLL-DLLQERKLLKNLKLLVLDEAHR-LLDM  132

Query  434  AYVEVVKF-LKRYNKSFRVLALTATPGSTVESV  465
             +   ++  L+R  K  ++L L+AT    +E +
Sbjct  133  GFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165



Lambda      K        H        a         alpha
   0.316    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1418577808


Query= TCONS_00006613

Length=1113
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res su...  96.6    1e-23
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  88.4    2e-21
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  81.9    2e-18


>CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res subunit. 
 
Length=162

 Score = 96.6 bits (241),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query  300  KTRDYQ--------FNIAQRGLFHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVA  351
            + R YQ         +I         L+ + TG GKT  AA ++   ++     +++F+ 
Sbjct  3    ELRPYQIEAIENLLESIKNG--QKRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVLFLV  60

Query  352  PTKPLVAQQISACFQVAGIPRSETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSG  411
            P K L+ Q +    +          +++G+       E     ++   T Q+L   L+  
Sbjct  61   PRKDLLEQALEEFKKFLPNYVEIGEIISGDKKD----ESVDDNKIVVTTIQSLYKALELA  116

Query  412  I--ADPKRIVLLVVDEAHRATGGYAYVEVVKFLKRYNKSFRVLALTATP  458
                 P    ++++DEAHR+    +Y  +++    Y K   +L LTATP
Sbjct  117  SLELLPDFFDVIIIDEAHRSGAS-SYRNILE----YFKPAFLLGLTATP  160


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 88.4 bits (220),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 31/108 (29%), Positives = 56/108 (52%), Gaps = 11/108 (10%)

Query  668  QSQSATRIMIFVHFRDSAEEVVRVLKRHEPLIRPHVFVGQSSAKGSEGMDQKTQLSIVQK  727
            + +   +++IF   + + E    +L   E         G   A+    + Q+ +  I++ 
Sbjct  11   KKERGGKVLIFSQTKKTLEA--ELLLEKE---------GIKVARLHGDLSQEEREEILED  59

Query  728  FKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGR  775
            F+KG  + +VAT + E GLD+ +VDL++ YD   +P   +QR+GR GR
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGR  107


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 81.9 bits (203),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 41/153 (27%), Positives = 66/153 (43%), Gaps = 4/153 (3%)

Query  315  HNLLVALPTGLGKTFIAATIMLNWYRWTKSA-QIIFVAPTKPLVAQQISACFQVAGIPRS  373
             ++LV  PTG GKT       L       +  Q + +APT+ L  Q      ++      
Sbjct  15   RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYEELKKLGKGLGL  74

Query  374  ETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSGIADPKRIVLLVVDEAHRATGGY  433
            +   L G  +   + E+ K   +   TP  L+ DL       K + LLV+DEAHR     
Sbjct  75   KVASLLGGDSRKEQLEKLKGPDILVGTPGRLL-DLLQERKLLKNLKLLVLDEAHR-LLDM  132

Query  434  AYVEVVKF-LKRYNKSFRVLALTATPGSTVESV  465
             +   ++  L+R  K  ++L L+AT    +E +
Sbjct  133  GFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165



Lambda      K        H        a         alpha
   0.316    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0802    0.140     1.90     42.6     43.6 

Effective search space used: 1418577808


Query= TCONS_00000429

Length=1101
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res su...  96.6    1e-23
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  88.8    2e-21
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  81.9    2e-18


>CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res subunit. 
 
Length=162

 Score = 96.6 bits (241),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query  288  KTRDYQ--------FNIAQRGLFHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVA  339
            + R YQ         +I         L+ + TG GKT  AA ++   ++     +++F+ 
Sbjct  3    ELRPYQIEAIENLLESIKNG--QKRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVLFLV  60

Query  340  PTKPLVAQQISACFQVAGIPRSETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSG  399
            P K L+ Q +    +          +++G+       E     ++   T Q+L   L+  
Sbjct  61   PRKDLLEQALEEFKKFLPNYVEIGEIISGDKKD----ESVDDNKIVVTTIQSLYKALELA  116

Query  400  I--ADPKRIVLLVVDEAHRATGGYAYVEVVKFLKRYNKSFRVLALTATP  446
                 P    ++++DEAHR+    +Y  +++    Y K   +L LTATP
Sbjct  117  SLELLPDFFDVIIIDEAHRSGAS-SYRNILE----YFKPAFLLGLTATP  160


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 88.8 bits (221),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 31/108 (29%), Positives = 56/108 (52%), Gaps = 11/108 (10%)

Query  656  QSQSATRIMIFVHFRDSAEEVVRVLKRHEPLIRPHVFVGQSSAKGSEGMDQKTQLSIVQK  715
            + +   +++IF   + + E    +L   E         G   A+    + Q+ +  I++ 
Sbjct  11   KKERGGKVLIFSQTKKTLEA--ELLLEKE---------GIKVARLHGDLSQEEREEILED  59

Query  716  FKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGR  763
            F+KG  + +VAT + E GLD+ +VDL++ YD   +P   +QR+GR GR
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGR  107


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 81.9 bits (203),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 41/153 (27%), Positives = 66/153 (43%), Gaps = 4/153 (3%)

Query  303  HNLLVALPTGLGKTFIAATIMLNWYRWTKSA-QIIFVAPTKPLVAQQISACFQVAGIPRS  361
             ++LV  PTG GKT       L       +  Q + +APT+ L  Q      ++      
Sbjct  15   RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYEELKKLGKGLGL  74

Query  362  ETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSGIADPKRIVLLVVDEAHRATGGY  421
            +   L G  +   + E+ K   +   TP  L+ DL       K + LLV+DEAHR     
Sbjct  75   KVASLLGGDSRKEQLEKLKGPDILVGTPGRLL-DLLQERKLLKNLKLLVLDEAHR-LLDM  132

Query  422  AYVEVVKF-LKRYNKSFRVLALTATPGSTVESV  453
             +   ++  L+R  K  ++L L+AT    +E +
Sbjct  133  GFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165



Lambda      K        H        a         alpha
   0.315    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1401822952


Query= TCONS_00000430

Length=998
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res su...  96.2    1e-23
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  88.4    2e-21
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  81.9    2e-18


>CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res subunit. 
 
Length=162

 Score = 96.2 bits (240),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query  185  KTRDYQ--------FNIAQRGLFHNLLVALPTGLGKTFIAATIMLNWYRWTKSAQIIFVA  236
            + R YQ         +I         L+ + TG GKT  AA ++   ++     +++F+ 
Sbjct  3    ELRPYQIEAIENLLESIKNG--QKRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVLFLV  60

Query  237  PTKPLVAQQISACFQVAGIPRSETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSG  296
            P K L+ Q +    +          +++G+       E     ++   T Q+L   L+  
Sbjct  61   PRKDLLEQALEEFKKFLPNYVEIGEIISGDKKD----ESVDDNKIVVTTIQSLYKALELA  116

Query  297  I--ADPKRIVLLVVDEAHRATGGYAYVEVVKFLKRYNKSFRVLALTATP  343
                 P    ++++DEAHR+    +Y  +++    Y K   +L LTATP
Sbjct  117  SLELLPDFFDVIIIDEAHRSGAS-SYRNILE----YFKPAFLLGLTATP  160


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 88.4 bits (220),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 31/108 (29%), Positives = 56/108 (52%), Gaps = 11/108 (10%)

Query  553  QSQSATRIMIFVHFRDSAEEVVRVLKRHEPLIRPHVFVGQSSAKGSEGMDQKTQLSIVQK  612
            + +   +++IF   + + E    +L   E         G   A+    + Q+ +  I++ 
Sbjct  11   KKERGGKVLIFSQTKKTLEA--ELLLEKE---------GIKVARLHGDLSQEEREEILED  59

Query  613  FKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGR  660
            F+KG  + +VAT + E GLD+ +VDL++ YD   +P   +QR+GR GR
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGR  107


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 81.9 bits (203),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 41/153 (27%), Positives = 66/153 (43%), Gaps = 4/153 (3%)

Query  200  HNLLVALPTGLGKTFIAATIMLNWYRWTKSA-QIIFVAPTKPLVAQQISACFQVAGIPRS  258
             ++LV  PTG GKT       L       +  Q + +APT+ L  Q      ++      
Sbjct  15   RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYEELKKLGKGLGL  74

Query  259  ETTMLTGEAAPGIRAEEWKSKRVFFMTPQTLVNDLKSGIADPKRIVLLVVDEAHRATGGY  318
            +   L G  +   + E+ K   +   TP  L+ DL       K + LLV+DEAHR     
Sbjct  75   KVASLLGGDSRKEQLEKLKGPDILVGTPGRLL-DLLQERKLLKNLKLLVLDEAHR-LLDM  132

Query  319  AYVEVVKF-LKRYNKSFRVLALTATPGSTVESV  350
             +   ++  L+R  K  ++L L+AT    +E +
Sbjct  133  GFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165



Lambda      K        H        a         alpha
   0.316    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1277120152


Query= TCONS_00000431

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  87.7    2e-21


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 87.7 bits (218),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 31/108 (29%), Positives = 56/108 (52%), Gaps = 11/108 (10%)

Query  43   QSQSATRIMIFVHFRDSAEEVVRVLKRHEPLIRPHVFVGQSSAKGSEGMDQKTQLSIVQK  102
            + +   +++IF   + + E    +L   E         G   A+    + Q+ +  I++ 
Sbjct  11   KKERGGKVLIFSQTKKTLEA--ELLLEKE---------GIKVARLHGDLSQEEREEILED  59

Query  103  FKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGR  150
            F+KG  + +VAT + E GLD+ +VDL++ YD   +P   +QR+GR GR
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGR  107



Lambda      K        H        a         alpha
   0.315    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 601084202


Query= TCONS_00000432

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460070 pfam01115, F_actin_cap_B, F-actin capping protein, bet...  437     2e-157


>CDD:460070 pfam01115, F_actin_cap_B, F-actin capping protein, beta subunit. 
 
Length=230

 Score = 437 bits (1127),  Expect = 2e-157, Method: Composition-based stats.
 Identities = 149/230 (65%), Positives = 183/230 (80%), Gaps = 3/230 (1%)

Query  48   DLLRRLNPRDTKQNLQAITSIVPDLTEDLLSSVDQPLEIRRCPKTNRDYLLCDYNRDGDS  107
            DLLRRL P+  ++NL  + ++ PDL +DLLSSVDQPL+I++  +T ++YLLCDYNRDGDS
Sbjct  1    DLLRRLPPKKIEENLNNLITLCPDLADDLLSSVDQPLKIKQDKETGKEYLLCDYNRDGDS  60

Query  108  YRSPWSNEFDPPLEDGTVPSERVRKLEVAANEAFDVYRELYYEGGVGSVYFWDLDD-GFA  166
            YRSPWSN++DPPLEDG VPS+R+RKLE+ AN+AFDVYR+LYYEGG+ SVY WDLDD GFA
Sbjct  61   YRSPWSNKYDPPLEDGPVPSDRLRKLEIKANDAFDVYRDLYYEGGISSVYLWDLDDGGFA  120

Query  167  GVILLKKGVTPGAKSSGEWDSIHVFEATDRA--RMSHYKLTSTVILHLANENEALGEMDL  224
            GV+L+KK      +SSG WDSIHVFE T+      + YKLTSTVIL L   +EA G + L
Sbjct  121  GVVLIKKEGDGSNESSGSWDSIHVFEVTETDSSGTATYKLTSTVILSLKTNDEATGALTL  180

Query  225  SGNMTRQMEVDLPVESDASHVANVGRLVEDMELKMRNLLQEVYFGKAKDV  274
            SG++TRQ E  LPV    SH+AN+GRL+EDME KMRNLLQEVYFGK KD+
Sbjct  181  SGSLTRQTEKTLPVNDLDSHIANIGRLIEDMENKMRNLLQEVYFGKTKDI  230



Lambda      K        H        a         alpha
   0.316    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00006614

Length=745
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461330 pfam04494, TFIID_NTD2, WD40 associated region in TFIID...  194     3e-59


>CDD:461330 pfam04494, TFIID_NTD2, WD40 associated region in TFIID subunit, 
NTD2 domain.  This region is an all-alpha domain associated 
with the WD40 helical bundle of the TAF5 subunit of transcription 
factor TFIID. The domain has distant structural similarity 
to RNA polymerase II CTD interacting factors. It contains 
several conserved clefts that are likely to be critical 
for TFIID complex assembly. The TAF5 subunit is present twice 
in the TFIID complex and is critical for the function and 
assembly of the complex, and the NTD2 and N-terminal domain 
is crucial for homodimerization.
Length=130

 Score = 194 bits (496),  Expect = 3e-59, Method: Composition-based stats.
 Identities = 56/133 (42%), Positives = 90/133 (68%), Gaps = 3/133 (2%)

Query  98   EDARPKYRMGFDILKAWVEDNLDLYKPELRRVLWPLFVYSFLNMVTSFYPQEAKQFFDIN  157
            E    KY   + +L+ W+E +LD+YKPELRR+L+P+FV+S+L++V   + +EAK+FF+  
Sbjct  1    EGDPQKYERAYSLLRNWIESSLDIYKPELRRLLYPVFVHSYLDLVAKGHIEEAKEFFEKF  60

Query  158  KNLFLPEHTDDIRKLEPISLPEHVQDNATAKLYRNNKYRLVLSNPAFSNLMQFLENKSKE  217
            +      H DD+RKL  I+LPEH+++N  AKL+R+NKYR+ LS  +F  L++FL+     
Sbjct  61   RGDHEALHGDDLRKLAGITLPEHLEENELAKLFRSNKYRIRLSRYSFDLLLRFLQENES-  119

Query  218  GGSVMSAILSSYC  230
              SV+  I++ + 
Sbjct  120  --SVILRIINEHL  130



Lambda      K        H        a         alpha
   0.316    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 947303952


Query= TCONS_00000433

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00006615

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00000434

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00000435

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431216 pfam10329, DUF2417, Region of unknown function (DUF241...  366     4e-126


>CDD:431216 pfam10329, DUF2417, Region of unknown function (DUF2417).  This 
is a region of a family of proteins conserved in fungi some 
of whose members also have the Abhydrolase_1, pfam00561, 
domain in their sequence. The function of this region is not 
known.
Length=234

 Score = 366 bits (942),  Expect = 4e-126, Method: Composition-based stats.
 Identities = 143/234 (61%), Positives = 175/234 (75%), Gaps = 9/234 (4%)

Query  33   ERTRLLPR---------ENHGYLSPDDPAVSPYNLWSVRALRAFSSFCLAVSFVWWTFLL  83
            ERT LLP           N GYLSPDDPAVSPYNLWSVR LR  ++  L ++F+WW  LL
Sbjct  1    ERTPLLPNRKDSHIGPRTNDGYLSPDDPAVSPYNLWSVRNLRWITNVFLFITFIWWVLLL  60

Query  84   VSIFVSPPMMHSRGSGFFSFAYTTLTVGYLVIALLFFTIPSKAMTISGIVLAVFLFVDMC  143
            VS FVSPP +H+RGSGFF F+ TTL++G L++ L FF +PSK   I  IVLAV L VD+ 
Sbjct  61   VSDFVSPPGLHNRGSGFFDFSLTTLSLGTLLLNLWFFGVPSKLDRILNIVLAVLLLVDLI  120

Query  144  IILGVPQLRVEEGWVGIASVVWATLISIFNVLQNRTVAWGKREEEERLTGREETRRSLRE  203
            +IL VP  R EEGWVGIASV+WA L+ ++ +L +RTVAWGK+EEEERLTGR ETRR+LRE
Sbjct  121  LILAVPYTRHEEGWVGIASVIWAALMFLWGILADRTVAWGKKEEEERLTGRPETRRTLRE  180

Query  204  WIAVLIDTIFMVVFAIVSILFTATLIIRARDASLPAPGQKYLVHGEKYQVHLAC  257
            W+AVL+ TI  +V  +V+ILFT TLI+RA DA L  PG++Y V  +KYQVHLAC
Sbjct  181  WLAVLVSTIIKLVLLVVTILFTLTLILRALDAHLAPPGKRYWVDDDKYQVHLAC  234



Lambda      K        H        a         alpha
   0.321    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00006616

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431216 pfam10329, DUF2417, Region of unknown function (DUF241...  366     4e-126


>CDD:431216 pfam10329, DUF2417, Region of unknown function (DUF2417).  This 
is a region of a family of proteins conserved in fungi some 
of whose members also have the Abhydrolase_1, pfam00561, 
domain in their sequence. The function of this region is not 
known.
Length=234

 Score = 366 bits (942),  Expect = 4e-126, Method: Composition-based stats.
 Identities = 143/234 (61%), Positives = 175/234 (75%), Gaps = 9/234 (4%)

Query  33   ERTRLLPR---------ENHGYLSPDDPAVSPYNLWSVRALRAFSSFCLAVSFVWWTFLL  83
            ERT LLP           N GYLSPDDPAVSPYNLWSVR LR  ++  L ++F+WW  LL
Sbjct  1    ERTPLLPNRKDSHIGPRTNDGYLSPDDPAVSPYNLWSVRNLRWITNVFLFITFIWWVLLL  60

Query  84   VSIFVSPPMMHSRGSGFFSFAYTTLTVGYLVIALLFFTIPSKAMTISGIVLAVFLFVDMC  143
            VS FVSPP +H+RGSGFF F+ TTL++G L++ L FF +PSK   I  IVLAV L VD+ 
Sbjct  61   VSDFVSPPGLHNRGSGFFDFSLTTLSLGTLLLNLWFFGVPSKLDRILNIVLAVLLLVDLI  120

Query  144  IILGVPQLRVEEGWVGIASVVWATLISIFNVLQNRTVAWGKREEEERLTGREETRRSLRE  203
            +IL VP  R EEGWVGIASV+WA L+ ++ +L +RTVAWGK+EEEERLTGR ETRR+LRE
Sbjct  121  LILAVPYTRHEEGWVGIASVIWAALMFLWGILADRTVAWGKKEEEERLTGRPETRRTLRE  180

Query  204  WIAVLIDTIFMVVFAIVSILFTATLIIRARDASLPAPGQKYLVHGEKYQVHLAC  257
            W+AVL+ TI  +V  +V+ILFT TLI+RA DA L  PG++Y V  +KYQVHLAC
Sbjct  181  WLAVLVSTIIKLVLLVVTILFTLTLILRALDAHLAPPGKRYWVDDDKYQVHLAC  234



Lambda      K        H        a         alpha
   0.321    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00006617

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431216 pfam10329, DUF2417, Region of unknown function (DUF241...  366     4e-126


>CDD:431216 pfam10329, DUF2417, Region of unknown function (DUF2417).  This 
is a region of a family of proteins conserved in fungi some 
of whose members also have the Abhydrolase_1, pfam00561, 
domain in their sequence. The function of this region is not 
known.
Length=234

 Score = 366 bits (942),  Expect = 4e-126, Method: Composition-based stats.
 Identities = 143/234 (61%), Positives = 175/234 (75%), Gaps = 9/234 (4%)

Query  33   ERTRLLPR---------ENHGYLSPDDPAVSPYNLWSVRALRAFSSFCLAVSFVWWTFLL  83
            ERT LLP           N GYLSPDDPAVSPYNLWSVR LR  ++  L ++F+WW  LL
Sbjct  1    ERTPLLPNRKDSHIGPRTNDGYLSPDDPAVSPYNLWSVRNLRWITNVFLFITFIWWVLLL  60

Query  84   VSIFVSPPMMHSRGSGFFSFAYTTLTVGYLVIALLFFTIPSKAMTISGIVLAVFLFVDMC  143
            VS FVSPP +H+RGSGFF F+ TTL++G L++ L FF +PSK   I  IVLAV L VD+ 
Sbjct  61   VSDFVSPPGLHNRGSGFFDFSLTTLSLGTLLLNLWFFGVPSKLDRILNIVLAVLLLVDLI  120

Query  144  IILGVPQLRVEEGWVGIASVVWATLISIFNVLQNRTVAWGKREEEERLTGREETRRSLRE  203
            +IL VP  R EEGWVGIASV+WA L+ ++ +L +RTVAWGK+EEEERLTGR ETRR+LRE
Sbjct  121  LILAVPYTRHEEGWVGIASVIWAALMFLWGILADRTVAWGKKEEEERLTGRPETRRTLRE  180

Query  204  WIAVLIDTIFMVVFAIVSILFTATLIIRARDASLPAPGQKYLVHGEKYQVHLAC  257
            W+AVL+ TI  +V  +V+ILFT TLI+RA DA L  PG++Y V  +KYQVHLAC
Sbjct  181  WLAVLVSTIIKLVLLVVTILFTLTLILRALDAHLAPPGKRYWVDDDKYQVHLAC  234



Lambda      K        H        a         alpha
   0.321    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00000437

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431216 pfam10329, DUF2417, Region of unknown function (DUF241...  261     9e-88


>CDD:431216 pfam10329, DUF2417, Region of unknown function (DUF2417).  This 
is a region of a family of proteins conserved in fungi some 
of whose members also have the Abhydrolase_1, pfam00561, 
domain in their sequence. The function of this region is not 
known.
Length=234

 Score = 261 bits (669),  Expect = 9e-88, Method: Composition-based stats.
 Identities = 102/166 (61%), Positives = 129/166 (78%), Gaps = 0/166 (0%)

Query  1    MMHSRGSGFFSFAYTTLTVGYLVIALLFFTIPSKAMTISGIVLAVFLFVDMCIILGVPQL  60
             +H+RGSGFF F+ TTL++G L++ L FF +PSK   I  IVLAV L VD+ +IL VP  
Sbjct  69   GLHNRGSGFFDFSLTTLSLGTLLLNLWFFGVPSKLDRILNIVLAVLLLVDLILILAVPYT  128

Query  61   RVEEGWVGIASVVWATLISIFNVLQNRTVAWGKREEEERLTGREETRRSLREWIAVLIDT  120
            R EEGWVGIASV+WA L+ ++ +L +RTVAWGK+EEEERLTGR ETRR+LREW+AVL+ T
Sbjct  129  RHEEGWVGIASVIWAALMFLWGILADRTVAWGKKEEEERLTGRPETRRTLREWLAVLVST  188

Query  121  IFMVVFAIVSILFTATLIIRARDASLPAPGQKYLVHGEKYQVHLAC  166
            I  +V  +V+ILFT TLI+RA DA L  PG++Y V  +KYQVHLAC
Sbjct  189  IIKLVLLVVTILFTLTLILRALDAHLAPPGKRYWVDDDKYQVHLAC  234



Lambda      K        H        a         alpha
   0.324    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00000438

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00000439

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00006618

Length=65
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460324 pfam01779, Ribosomal_L29e, Ribosomal L29e protein family   60.7    2e-15


>CDD:460324 pfam01779, Ribosomal_L29e, Ribosomal L29e protein family.  
Length=39

 Score = 60.7 bits (148),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 29/39 (74%), Positives = 35/39 (90%), Gaps = 0/39 (0%)

Query  4   SKNASQHHRSQKAHRNGIKKPKTHRYPSLKGVDPKFRRN  42
           SKN + H++++KAHRNGIKKPK+HRY SLKGVDPKF RN
Sbjct  1   SKNHTNHNQNRKAHRNGIKKPKSHRYTSLKGVDPKFLRN  39



Lambda      K        H        a         alpha
   0.314    0.126    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00000441

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00006619

Length=65
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460324 pfam01779, Ribosomal_L29e, Ribosomal L29e protein family   60.7    2e-15


>CDD:460324 pfam01779, Ribosomal_L29e, Ribosomal L29e protein family.  
Length=39

 Score = 60.7 bits (148),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 29/39 (74%), Positives = 35/39 (90%), Gaps = 0/39 (0%)

Query  4   SKNASQHHRSQKAHRNGIKKPKTHRYPSLKGVDPKFRRN  42
           SKN + H++++KAHRNGIKKPK+HRY SLKGVDPKF RN
Sbjct  1   SKNHTNHNQNRKAHRNGIKKPKSHRYTSLKGVDPKFLRN  39



Lambda      K        H        a         alpha
   0.314    0.126    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00000440

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00006620

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.147    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00000442

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family ...  439     9e-150


>CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31.  Glycosyl 
hydrolases are key enzymes of carbohydrate metabolism. 
Family 31 comprises of enzymes that are, or similar to, alpha- 
galactosidases.
Length=443

 Score = 439 bits (1131),  Expect = 9e-150, Method: Composition-based stats.
 Identities = 161/454 (35%), Positives = 236/454 (52%), Gaps = 28/454 (6%)

Query  211  IVAGDTPAEIEEGYCKVTGYVPMMPEYGLGFWQCKLRYWNQEQLLNVAREYKRRNVPLDV  270
               G TP ++ + Y ++TG  P+ P + LG+ Q +  Y ++E++L V   ++ R++PLDV
Sbjct  2    FFLGPTPKDVVKQYTELTGRPPLPPYWALGYHQSRWGYKSEEEVLEVVDGFRERDIPLDV  61

Query  271  IVVDFFHWKHQGEWSFDPEFWPDPDAMVKELKEMNVELMVSIWPTVENLSENYP---EML  327
            I +D  +     ++++DPE +PDP  MV EL     +L+V I P ++ +   YP   E L
Sbjct  62   IWLDIDYMDGYRDFTWDPERFPDPKGMVDELHAKGQKLVVIIDPGIKKVDPGYPPYDEGL  121

Query  328  ERGLLIRHDRGLRVAMQCDGDVTHFDATNPEARKYIWEKAKKNYYDKGIKIFWLDEAEPE  387
            E+G  +++  G        G     D TNPEAR +  ++  K   D G+   W D  EP 
Sbjct  122  EKGYFVKNPDGSLYVGGWPGMSAFPDFTNPEARDWWADQLFKFLLDMGVDGIWNDMNEPS  181

Query  388  YSIYDF-------DIYRYQAGSNLQIGNIFPREYARAFYEGM-EAEGQKNIVNLLRCAWA  439
                         D        +  + N++    A+A YEG+ E    K    L R  +A
Sbjct  182  VFCGSGPEDTVAKDNDPGGGVEHYDVHNLYGLLMAKATYEGLREKRPNKRPFVLTRSGFA  241

Query  440  GSQKYGALVWSGDIASSWGSFRNQLAAGLNMGLAGIPWWTTDIGGFHGGNPADPAFRELF  499
            GSQ+Y A  WSGD  S+W   R  +  GL++GL+GIP+W  DIGGF      +P   EL+
Sbjct  242  GSQRYAA-HWSGDNTSTWEHLRFSIPGGLSLGLSGIPFWGADIGGF-----FNPTTPELY  295

Query  500  TRWFQWGTFCPVMRLHGDREPKPEGQPTAPGADNEIWSYGEEVYEICKKYIDIREELRNY  559
             RW+Q G F P  R H   + +            E W +GEEV EI +K I +R  L  Y
Sbjct  296  VRWYQLGAFSPFFRNHSSIDTRR----------REPWLFGEEVEEIIRKAIRLRYRLLPY  345

Query  560  TRSLMKEAHEKGTPVIRTLFYEFPEDKKSWEVETQYLFGSKYLVAPVLEAGQRKITVYLP  619
              +L  EAHE G PV+R LF EFP+D  +++++ Q++FG   LVAPVLE G   + VYLP
Sbjct  346  LYTLFYEAHETGLPVMRPLFLEFPDDPNTFDIDDQFMFGPSLLVAPVLEEGATSVDVYLP  405

Query  620  EGALWKLWGEETERPGGQDVEVACPIETMPVFVR  653
             G  +  W  E    GG  V V  P++ +P+FVR
Sbjct  406  GGRWYDFWTGE-RYEGGGTVPVTAPLDRIPLFVR  438



Lambda      K        H        a         alpha
   0.319    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 827357190


Query= TCONS_00000444

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family ...  439     9e-150


>CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31.  Glycosyl 
hydrolases are key enzymes of carbohydrate metabolism. 
Family 31 comprises of enzymes that are, or similar to, alpha- 
galactosidases.
Length=443

 Score = 439 bits (1131),  Expect = 9e-150, Method: Composition-based stats.
 Identities = 161/454 (35%), Positives = 236/454 (52%), Gaps = 28/454 (6%)

Query  211  IVAGDTPAEIEEGYCKVTGYVPMMPEYGLGFWQCKLRYWNQEQLLNVAREYKRRNVPLDV  270
               G TP ++ + Y ++TG  P+ P + LG+ Q +  Y ++E++L V   ++ R++PLDV
Sbjct  2    FFLGPTPKDVVKQYTELTGRPPLPPYWALGYHQSRWGYKSEEEVLEVVDGFRERDIPLDV  61

Query  271  IVVDFFHWKHQGEWSFDPEFWPDPDAMVKELKEMNVELMVSIWPTVENLSENYP---EML  327
            I +D  +     ++++DPE +PDP  MV EL     +L+V I P ++ +   YP   E L
Sbjct  62   IWLDIDYMDGYRDFTWDPERFPDPKGMVDELHAKGQKLVVIIDPGIKKVDPGYPPYDEGL  121

Query  328  ERGLLIRHDRGLRVAMQCDGDVTHFDATNPEARKYIWEKAKKNYYDKGIKIFWLDEAEPE  387
            E+G  +++  G        G     D TNPEAR +  ++  K   D G+   W D  EP 
Sbjct  122  EKGYFVKNPDGSLYVGGWPGMSAFPDFTNPEARDWWADQLFKFLLDMGVDGIWNDMNEPS  181

Query  388  YSIYDF-------DIYRYQAGSNLQIGNIFPREYARAFYEGM-EAEGQKNIVNLLRCAWA  439
                         D        +  + N++    A+A YEG+ E    K    L R  +A
Sbjct  182  VFCGSGPEDTVAKDNDPGGGVEHYDVHNLYGLLMAKATYEGLREKRPNKRPFVLTRSGFA  241

Query  440  GSQKYGALVWSGDIASSWGSFRNQLAAGLNMGLAGIPWWTTDIGGFHGGNPADPAFRELF  499
            GSQ+Y A  WSGD  S+W   R  +  GL++GL+GIP+W  DIGGF      +P   EL+
Sbjct  242  GSQRYAA-HWSGDNTSTWEHLRFSIPGGLSLGLSGIPFWGADIGGF-----FNPTTPELY  295

Query  500  TRWFQWGTFCPVMRLHGDREPKPEGQPTAPGADNEIWSYGEEVYEICKKYIDIREELRNY  559
             RW+Q G F P  R H   + +            E W +GEEV EI +K I +R  L  Y
Sbjct  296  VRWYQLGAFSPFFRNHSSIDTRR----------REPWLFGEEVEEIIRKAIRLRYRLLPY  345

Query  560  TRSLMKEAHEKGTPVIRTLFYEFPEDKKSWEVETQYLFGSKYLVAPVLEAGQRKITVYLP  619
              +L  EAHE G PV+R LF EFP+D  +++++ Q++FG   LVAPVLE G   + VYLP
Sbjct  346  LYTLFYEAHETGLPVMRPLFLEFPDDPNTFDIDDQFMFGPSLLVAPVLEEGATSVDVYLP  405

Query  620  EGALWKLWGEETERPGGQDVEVACPIETMPVFVR  653
             G  +  W  E    GG  V V  P++ +P+FVR
Sbjct  406  GGRWYDFWTGE-RYEGGGTVPVTAPLDRIPLFVR  438



Lambda      K        H        a         alpha
   0.319    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 827357190


Query= TCONS_00000443

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family ...  439     9e-150


>CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31.  Glycosyl 
hydrolases are key enzymes of carbohydrate metabolism. 
Family 31 comprises of enzymes that are, or similar to, alpha- 
galactosidases.
Length=443

 Score = 439 bits (1131),  Expect = 9e-150, Method: Composition-based stats.
 Identities = 161/454 (35%), Positives = 236/454 (52%), Gaps = 28/454 (6%)

Query  211  IVAGDTPAEIEEGYCKVTGYVPMMPEYGLGFWQCKLRYWNQEQLLNVAREYKRRNVPLDV  270
               G TP ++ + Y ++TG  P+ P + LG+ Q +  Y ++E++L V   ++ R++PLDV
Sbjct  2    FFLGPTPKDVVKQYTELTGRPPLPPYWALGYHQSRWGYKSEEEVLEVVDGFRERDIPLDV  61

Query  271  IVVDFFHWKHQGEWSFDPEFWPDPDAMVKELKEMNVELMVSIWPTVENLSENYP---EML  327
            I +D  +     ++++DPE +PDP  MV EL     +L+V I P ++ +   YP   E L
Sbjct  62   IWLDIDYMDGYRDFTWDPERFPDPKGMVDELHAKGQKLVVIIDPGIKKVDPGYPPYDEGL  121

Query  328  ERGLLIRHDRGLRVAMQCDGDVTHFDATNPEARKYIWEKAKKNYYDKGIKIFWLDEAEPE  387
            E+G  +++  G        G     D TNPEAR +  ++  K   D G+   W D  EP 
Sbjct  122  EKGYFVKNPDGSLYVGGWPGMSAFPDFTNPEARDWWADQLFKFLLDMGVDGIWNDMNEPS  181

Query  388  YSIYDF-------DIYRYQAGSNLQIGNIFPREYARAFYEGM-EAEGQKNIVNLLRCAWA  439
                         D        +  + N++    A+A YEG+ E    K    L R  +A
Sbjct  182  VFCGSGPEDTVAKDNDPGGGVEHYDVHNLYGLLMAKATYEGLREKRPNKRPFVLTRSGFA  241

Query  440  GSQKYGALVWSGDIASSWGSFRNQLAAGLNMGLAGIPWWTTDIGGFHGGNPADPAFRELF  499
            GSQ+Y A  WSGD  S+W   R  +  GL++GL+GIP+W  DIGGF      +P   EL+
Sbjct  242  GSQRYAA-HWSGDNTSTWEHLRFSIPGGLSLGLSGIPFWGADIGGF-----FNPTTPELY  295

Query  500  TRWFQWGTFCPVMRLHGDREPKPEGQPTAPGADNEIWSYGEEVYEICKKYIDIREELRNY  559
             RW+Q G F P  R H   + +            E W +GEEV EI +K I +R  L  Y
Sbjct  296  VRWYQLGAFSPFFRNHSSIDTRR----------REPWLFGEEVEEIIRKAIRLRYRLLPY  345

Query  560  TRSLMKEAHEKGTPVIRTLFYEFPEDKKSWEVETQYLFGSKYLVAPVLEAGQRKITVYLP  619
              +L  EAHE G PV+R LF EFP+D  +++++ Q++FG   LVAPVLE G   + VYLP
Sbjct  346  LYTLFYEAHETGLPVMRPLFLEFPDDPNTFDIDDQFMFGPSLLVAPVLEEGATSVDVYLP  405

Query  620  EGALWKLWGEETERPGGQDVEVACPIETMPVFVR  653
             G  +  W  E    GG  V V  P++ +P+FVR
Sbjct  406  GGRWYDFWTGE-RYEGGGTVPVTAPLDRIPLFVR  438



Lambda      K        H        a         alpha
   0.319    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 827357190


Query= TCONS_00000445

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family ...  109     1e-27


>CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31.  Glycosyl 
hydrolases are key enzymes of carbohydrate metabolism. 
Family 31 comprises of enzymes that are, or similar to, alpha- 
galactosidases.
Length=443

 Score = 109 bits (274),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 52/84 (62%), Gaps = 0/84 (0%)

Query  211  IVAGDTPAEIEEGYCKVTGYVPMMPEYGLGFWQCKLRYWNQEQLLNVAREYKRRNVPLDV  270
               G TP ++ + Y ++TG  P+ P + LG+ Q +  Y ++E++L V   ++ R++PLDV
Sbjct  2    FFLGPTPKDVVKQYTELTGRPPLPPYWALGYHQSRWGYKSEEEVLEVVDGFRERDIPLDV  61

Query  271  IVVDFFHWKHQGEWSFDPEFWPDP  294
            I +D  +     ++++DPE +PDP
Sbjct  62   IWLDIDYMDGYRDFTWDPERFPDP  85



Lambda      K        H        a         alpha
   0.318    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00006622

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family ...  439     9e-150


>CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31.  Glycosyl 
hydrolases are key enzymes of carbohydrate metabolism. 
Family 31 comprises of enzymes that are, or similar to, alpha- 
galactosidases.
Length=443

 Score = 439 bits (1131),  Expect = 9e-150, Method: Composition-based stats.
 Identities = 161/454 (35%), Positives = 236/454 (52%), Gaps = 28/454 (6%)

Query  211  IVAGDTPAEIEEGYCKVTGYVPMMPEYGLGFWQCKLRYWNQEQLLNVAREYKRRNVPLDV  270
               G TP ++ + Y ++TG  P+ P + LG+ Q +  Y ++E++L V   ++ R++PLDV
Sbjct  2    FFLGPTPKDVVKQYTELTGRPPLPPYWALGYHQSRWGYKSEEEVLEVVDGFRERDIPLDV  61

Query  271  IVVDFFHWKHQGEWSFDPEFWPDPDAMVKELKEMNVELMVSIWPTVENLSENYP---EML  327
            I +D  +     ++++DPE +PDP  MV EL     +L+V I P ++ +   YP   E L
Sbjct  62   IWLDIDYMDGYRDFTWDPERFPDPKGMVDELHAKGQKLVVIIDPGIKKVDPGYPPYDEGL  121

Query  328  ERGLLIRHDRGLRVAMQCDGDVTHFDATNPEARKYIWEKAKKNYYDKGIKIFWLDEAEPE  387
            E+G  +++  G        G     D TNPEAR +  ++  K   D G+   W D  EP 
Sbjct  122  EKGYFVKNPDGSLYVGGWPGMSAFPDFTNPEARDWWADQLFKFLLDMGVDGIWNDMNEPS  181

Query  388  YSIYDF-------DIYRYQAGSNLQIGNIFPREYARAFYEGM-EAEGQKNIVNLLRCAWA  439
                         D        +  + N++    A+A YEG+ E    K    L R  +A
Sbjct  182  VFCGSGPEDTVAKDNDPGGGVEHYDVHNLYGLLMAKATYEGLREKRPNKRPFVLTRSGFA  241

Query  440  GSQKYGALVWSGDIASSWGSFRNQLAAGLNMGLAGIPWWTTDIGGFHGGNPADPAFRELF  499
            GSQ+Y A  WSGD  S+W   R  +  GL++GL+GIP+W  DIGGF      +P   EL+
Sbjct  242  GSQRYAA-HWSGDNTSTWEHLRFSIPGGLSLGLSGIPFWGADIGGF-----FNPTTPELY  295

Query  500  TRWFQWGTFCPVMRLHGDREPKPEGQPTAPGADNEIWSYGEEVYEICKKYIDIREELRNY  559
             RW+Q G F P  R H   + +            E W +GEEV EI +K I +R  L  Y
Sbjct  296  VRWYQLGAFSPFFRNHSSIDTRR----------REPWLFGEEVEEIIRKAIRLRYRLLPY  345

Query  560  TRSLMKEAHEKGTPVIRTLFYEFPEDKKSWEVETQYLFGSKYLVAPVLEAGQRKITVYLP  619
              +L  EAHE G PV+R LF EFP+D  +++++ Q++FG   LVAPVLE G   + VYLP
Sbjct  346  LYTLFYEAHETGLPVMRPLFLEFPDDPNTFDIDDQFMFGPSLLVAPVLEEGATSVDVYLP  405

Query  620  EGALWKLWGEETERPGGQDVEVACPIETMPVFVR  653
             G  +  W  E    GG  V V  P++ +P+FVR
Sbjct  406  GGRWYDFWTGE-RYEGGGTVPVTAPLDRIPLFVR  438



Lambda      K        H        a         alpha
   0.319    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0731    0.140     1.90     42.6     43.6 

Effective search space used: 827357190


Query= TCONS_00006621

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family ...  439     9e-150


>CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31.  Glycosyl 
hydrolases are key enzymes of carbohydrate metabolism. 
Family 31 comprises of enzymes that are, or similar to, alpha- 
galactosidases.
Length=443

 Score = 439 bits (1131),  Expect = 9e-150, Method: Composition-based stats.
 Identities = 161/454 (35%), Positives = 236/454 (52%), Gaps = 28/454 (6%)

Query  211  IVAGDTPAEIEEGYCKVTGYVPMMPEYGLGFWQCKLRYWNQEQLLNVAREYKRRNVPLDV  270
               G TP ++ + Y ++TG  P+ P + LG+ Q +  Y ++E++L V   ++ R++PLDV
Sbjct  2    FFLGPTPKDVVKQYTELTGRPPLPPYWALGYHQSRWGYKSEEEVLEVVDGFRERDIPLDV  61

Query  271  IVVDFFHWKHQGEWSFDPEFWPDPDAMVKELKEMNVELMVSIWPTVENLSENYP---EML  327
            I +D  +     ++++DPE +PDP  MV EL     +L+V I P ++ +   YP   E L
Sbjct  62   IWLDIDYMDGYRDFTWDPERFPDPKGMVDELHAKGQKLVVIIDPGIKKVDPGYPPYDEGL  121

Query  328  ERGLLIRHDRGLRVAMQCDGDVTHFDATNPEARKYIWEKAKKNYYDKGIKIFWLDEAEPE  387
            E+G  +++  G        G     D TNPEAR +  ++  K   D G+   W D  EP 
Sbjct  122  EKGYFVKNPDGSLYVGGWPGMSAFPDFTNPEARDWWADQLFKFLLDMGVDGIWNDMNEPS  181

Query  388  YSIYDF-------DIYRYQAGSNLQIGNIFPREYARAFYEGM-EAEGQKNIVNLLRCAWA  439
                         D        +  + N++    A+A YEG+ E    K    L R  +A
Sbjct  182  VFCGSGPEDTVAKDNDPGGGVEHYDVHNLYGLLMAKATYEGLREKRPNKRPFVLTRSGFA  241

Query  440  GSQKYGALVWSGDIASSWGSFRNQLAAGLNMGLAGIPWWTTDIGGFHGGNPADPAFRELF  499
            GSQ+Y A  WSGD  S+W   R  +  GL++GL+GIP+W  DIGGF      +P   EL+
Sbjct  242  GSQRYAA-HWSGDNTSTWEHLRFSIPGGLSLGLSGIPFWGADIGGF-----FNPTTPELY  295

Query  500  TRWFQWGTFCPVMRLHGDREPKPEGQPTAPGADNEIWSYGEEVYEICKKYIDIREELRNY  559
             RW+Q G F P  R H   + +            E W +GEEV EI +K I +R  L  Y
Sbjct  296  VRWYQLGAFSPFFRNHSSIDTRR----------REPWLFGEEVEEIIRKAIRLRYRLLPY  345

Query  560  TRSLMKEAHEKGTPVIRTLFYEFPEDKKSWEVETQYLFGSKYLVAPVLEAGQRKITVYLP  619
              +L  EAHE G PV+R LF EFP+D  +++++ Q++FG   LVAPVLE G   + VYLP
Sbjct  346  LYTLFYEAHETGLPVMRPLFLEFPDDPNTFDIDDQFMFGPSLLVAPVLEEGATSVDVYLP  405

Query  620  EGALWKLWGEETERPGGQDVEVACPIETMPVFVR  653
             G  +  W  E    GG  V V  P++ +P+FVR
Sbjct  406  GGRWYDFWTGE-RYEGGGTVPVTAPLDRIPLFVR  438



Lambda      K        H        a         alpha
   0.319    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 827357190


Query= TCONS_00000446

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ER...  426     4e-147


>CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ERG24 family. 
 
Length=429

 Score = 426 bits (1097),  Expect = 4e-147, Method: Composition-based stats.
 Identities = 203/478 (42%), Positives = 268/478 (56%), Gaps = 56/478 (12%)

Query  24   YEFGGPLGAFVFIFGLSTLIYCLTFLCNDVSGCPVPSLLNPSTLSLDKLKEEAGWPQEGL  83
            YEFGG +GA     GL           N  SG  +     P +  +  L      P   +
Sbjct  5    YEFGGEIGALGIKIGLP----VFMLYLNGCSGFFMLMFFLPKSFDIAVLMNFIKDPSLMV  60

Query  84   KAFFDVRVTVWV--LSYYVLSLVLYVFLPGEVVEGTELACKGRLRYKFNALPSAILILGG  141
                +    +W   L +Y    V Y+ LPG+VVEG  L+   +L YK NA  S +L L  
Sbjct  61   FPGLEWERYLWTVFLLWYFFQAVFYLTLPGKVVEGLPLSNGRKLPYKINAFWSFLLTL--  118

Query  142  LALGTYMHGADFVVWTFLWDNYVQIITANLIICVVLAIFVYARSFSIPAPGQPNPELREL  201
             A    +H       T+L+DN+VQI+++ ++    LAI++Y RS   P       E  + 
Sbjct  119  -AAIGVLHYTQLFELTYLYDNFVQIMSSAILFSFALAIYLYVRSLKAP-------EEDKD  170

Query  202  APGGHSGNALYDFFIGRELNPRVQLPIPFVDEASRTIDINVWCEMRPGLLGWIILNLSNI  261
            APGG+SGN +YDFFIGRELNPR+             +DI ++ E+RPGLLGW+ +NL+ +
Sbjct  171  APGGNSGNLIYDFFIGRELNPRIGS-----------LDIKMFFELRPGLLGWVFINLAAL  219

Query  262  ARQYRTYGYITNSIVLSTVFQTFYVLDALYMEPAVLTTMDVIMDGFGYMLSFGHLVWVPF  321
             +QY TYGY+T S++   + Q  YV D L  E AVLTTMD+  DGFG+ML+FG LVWVPF
Sbjct  220  LKQYETYGYVTPSLLFVLLNQLLYVFDGLKNEEAVLTTMDITTDGFGFMLAFGDLVWVPF  279

Query  322  IYNIQTRYLAVFPLELR-LREILLILAVTGAGYAIFRGANNQKNRFRRDPSDPRMMHIKY  380
             Y++QTRYL+V P EL      + I A+   GY IFR AN+QKN FR +P+DP+++++KY
Sbjct  280  TYSLQTRYLSVHPSELGWSTYAVAIYALLLCGYYIFRSANSQKNNFRTNPADPKLIYLKY  339

Query  381  IQTSSGSKLMISGWWGLARHINYLGDWLMSWSYSLPTGIAGYTIIESINSSGDMQKQAIQ  440
            IQT +GS L+  GWWG ARHINYLGDWL S S+SLPTG                      
Sbjct  340  IQTKTGSGLLTDGWWGFARHINYLGDWLQSLSWSLPTGFN--------------------  379

Query  441  TPEVRGWGMIFTYFFLVYFGALLIHREGRDEEKCKSKYGTDWERYTSIVRSRIIPGIY  498
                     +  YF+ +YF  LL+HRE RDE KCK KYG DWE Y   V   IIP +Y
Sbjct  380  --------SVLPYFYPLYFAVLLVHREARDEHKCKKKYGLDWEEYCKRVPYHIIPYVY  429



Lambda      K        H        a         alpha
   0.326    0.143    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00006623

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ER...  350     1e-119


>CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ERG24 family. 
 
Length=429

 Score = 350 bits (900),  Expect = 1e-119, Method: Composition-based stats.
 Identities = 166/352 (47%), Positives = 218/352 (62%), Gaps = 47/352 (13%)

Query  1    MHGADFVVWTFLWDNYVQIITANLIICVVLAIFVYARSFSIPAPGQPNPELRELAPGGHS  60
            +H       T+L+DN+VQI+++ ++    LAI++Y RS   P       E  + APGG+S
Sbjct  124  LHYTQLFELTYLYDNFVQIMSSAILFSFALAIYLYVRSLKAP-------EEDKDAPGGNS  176

Query  61   GNALYDFFIGRELNPRVQLPIPFVDEASRTIDINVWCEMRPGLLGWIILNLSNIARQYRT  120
            GN +YDFFIGRELNPR+             +DI ++ E+RPGLLGW+ +NL+ + +QY T
Sbjct  177  GNLIYDFFIGRELNPRIGS-----------LDIKMFFELRPGLLGWVFINLAALLKQYET  225

Query  121  YGYITNSIVLSTVFQTFYVLDALYMEPAVLTTMDVIMDGFGYMLSFGHLVWVPFIYNIQT  180
            YGY+T S++   + Q  YV D L  E AVLTTMD+  DGFG+ML+FG LVWVPF Y++QT
Sbjct  226  YGYVTPSLLFVLLNQLLYVFDGLKNEEAVLTTMDITTDGFGFMLAFGDLVWVPFTYSLQT  285

Query  181  RYLAVFPLELR-LREILLILAVTGAGYAIFRGANNQKNRFRRDPSDPRMMHIKYIQTSSG  239
            RYL+V P EL      + I A+   GY IFR AN+QKN FR +P+DP+++++KYIQT +G
Sbjct  286  RYLSVHPSELGWSTYAVAIYALLLCGYYIFRSANSQKNNFRTNPADPKLIYLKYIQTKTG  345

Query  240  SKLMISGWWGLARHINYLGDWLMSWSYSLPTGIAGYTIIESINSSGDMQKQAIQTPEVRG  299
            S L+  GWWG ARHINYLGDWL S S+SLPTG                            
Sbjct  346  SGLLTDGWWGFARHINYLGDWLQSLSWSLPTGFN--------------------------  379

Query  300  WGMIFTYFFLVYFGALLIHREGRDEEKCKSKYGTDWERYTSIVRSRIIPGIY  351
               +  YF+ +YF  LL+HRE RDE KCK KYG DWE Y   V   IIP +Y
Sbjct  380  --SVLPYFYPLYFAVLLVHREARDEHKCKKKYGLDWEEYCKRVPYHIIPYVY  429



Lambda      K        H        a         alpha
   0.327    0.142    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00000447

Length=365


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00000449

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463889 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrola...  76.4    7e-17
CDD:459892 pfam00657, Lipase_GDSL, GDSL-like Lipase/Acylhydrolase     71.1    8e-15


>CDD:463889 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family. 
 This family of presumed lipases and related enzymes are 
similar to pfam00657.
Length=176

 Score = 76.4 bits (188),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 49/189 (26%), Positives = 75/189 (40%), Gaps = 18/189 (10%)

Query  79   LGASITWGYLSSTGNGYRKPLRDKLRFEGWEVDMVGSKSNGDMRDNDVEAHSGDVITQVH  138
            LG SIT GY ++ G+           + GW   ++  +   D+ +N     SG       
Sbjct  2    LGDSITAGYGATGGDR---------SYPGWLARLLARRLGADVVNN--LGISGATTRLDL  50

Query  139  TA-ATNSLVYKPNVVLINAGTNDCDRNIDPANAGARMRSLIETLIHAPDMARTLIVLSTL  197
                 + L  KP++V+I  GTND  R +  A A A + +LI+ L  A   AR L++    
Sbjct  51   LERLDDVLRLKPDLVVILLGTNDLGRGVSAARAAANLEALIDALRAAGPDARVLLIGPLP  110

Query  198  IPSGSTSVEANRPSVNAQYRALVSNMRAGQNVSIVLADMDPPAPSPGNNWIKYPDSYADN  257
            +       E    +  A+Y A +          +   D+       G      PD  AD+
Sbjct  111  VGPPPPLDERRLNARIAEYNAAIR--EVAAERGVPYVDLWDALRDDGGWL---PDLLADD  165

Query  258  K-HPNDYGY  265
              HPN  GY
Sbjct  166  GLHPNAAGY  174


>CDD:459892 pfam00657, Lipase_GDSL, GDSL-like Lipase/Acylhydrolase.  
Length=210

 Score = 71.1 bits (174),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 78/223 (35%), Gaps = 39/223 (17%)

Query  76   ILPLGASITWGY------LSSTGNGYRKPLRDKLRFE------GWEVDMVGSKSNGDMRD  123
            I+  G S+T G         S G+     L  KL         G    + G+        
Sbjct  1    IVAFGDSLTDGGGDGPGGRFSWGDLLADFLARKLGVPGSGYNHGANFAIGGATIEDLP--  58

Query  124  NDVEAHSGDVITQVHTAATNSLVY-KPNVVLINAGTND-CDRNIDPANAGARMRSLIETL  181
                      + Q+    ++     KP++V I  G ND C+    PA +  R+  L++ L
Sbjct  59   --------IQLEQLLRLISDVKDQAKPDLVTIFIGANDLCNFLSSPARSKKRVPDLLDEL  110

Query  182  I-HAPDMAR--TLIVLSTLIPSGST---SVEANRPSVNAQYRALVSNM-----RAGQNVS  230
              + P +        +  L P G T          ++  +Y   ++ +      A ++ +
Sbjct  111  RANLPQLGLGARKFWVHGLGPLGCTPPKGCYELYNALAEEYNERLNELVNSLAAAAEDAN  170

Query  231  IVLADM-DPPAPSPGNNWIKYPDSYADNKHPNDYGYSQMADIW  272
            +V  D+     P+     I       D  HP++ GY  +A+  
Sbjct  171  VVYVDIYGFEDPTDPCCGI---GLEPDGLHPSEKGYKAVAEAI  210



Lambda      K        H        a         alpha
   0.316    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00000450

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.139    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00000451

Length=481


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599678264


Query= TCONS_00006624

Length=779


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 996779120


Query= TCONS_00000452

Length=832
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463889 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrola...  63.3    6e-12


>CDD:463889 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family. 
 This family of presumed lipases and related enzymes are 
similar to pfam00657.
Length=176

 Score = 63.3 bits (154),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 37/143 (26%), Positives = 55/143 (38%), Gaps = 7/143 (5%)

Query  5    DVEAHSGDVITQVHTA-ATNSLVYKPNVVLINAGTNDCDRNIDPANAGARMRSLIETLIH  63
            +    SG            + L  KP++V+I  GTND  R +  A A A + +LI+ L  
Sbjct  37   NNLGISGATTRLDLLERLDDVLRLKPDLVVILLGTNDLGRGVSAARAAANLEALIDALRA  96

Query  64   APDMARTLIVLSTLIPSGSTSVEANRPSVNAQYRALVSNMRAGQNVSIVLADMDPPAPSP  123
            A   AR L++    +       E    +  A+Y A +          +   D+       
Sbjct  97   AGPDARVLLIGPLPVGPPPPLDERRLNARIAEYNAAIR--EVAAERGVPYVDLWDALRDD  154

Query  124  GNNWIKYPDSYADNK-HPNDYGY  145
            G      PD  AD+  HPN  GY
Sbjct  155  GGWL---PDLLADDGLHPNAAGY  174



Lambda      K        H        a         alpha
   0.317    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1057973818


Query= TCONS_00000453

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00006625

Length=445


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00000455

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00000456

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00006626

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00006627

Length=443


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00006628

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00006629

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00006630

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00006631

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00000458

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00006632

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00000460

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00000459

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00000461

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00000462

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00000463

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00000464

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00000465

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00000467

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             211     2e-62


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 211 bits (540),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 147/515 (29%), Positives = 211/515 (41%), Gaps = 105/515 (20%)

Query  34   GVAHFLGVQFARIP---ARFRQAELVHPL--VM---MYGPISPQPPDNSRESRQHLFVGA  85
             V  FLG+ +A  P    RF+  E   P   V     +GP  PQ  D +      L    
Sbjct  24   PVYAFLGIPYAEPPVGELRFQPPEPPEPWTGVRDATKFGPRCPQNGDLTSPGSSGL----  79

Query  86   PAANPKQSEFDCLRLNIYTPRVVISSEEKVPVLVWIHGGGWAIENGNADFSGDFLVRHSV  145
                 + SE DCL LN+YTP+ +  ++ K+PV+VWIHGGG+   +G+  + G +L     
Sbjct  80   -----EGSE-DCLYLNVYTPKELKENKNKLPVMVWIHGGGFMFGSGS-LYDGSYLAAE--  130

Query  146  ENKKPIVFVSINYRLGLLGFLSSSELSEEAAQYGEVGWANQGLHDQRLALLWVRQLFHEV  205
             +   ++ V+INYRLG LGFLS+    +EA   G     N GL DQ LAL WV++     
Sbjct  131  GD---VIVVTINYRLGPLGFLST--GDDEAP--G-----NYGLLDQVLALRWVQE-----  173

Query  206  RNHIHLFGGDGSNVTIAGESAGAWSVLAHLRSD--QPLFQRAIIQSAP---SWTMILPEE  260
              +I  FGGD + VT+ GESAGA SV   L S   + LF RAI+ S      W +     
Sbjct  174  --NIASFGGDPNRVTLFGESAGAASVSLLLLSPLSKGLFHRAILMSGSALSPWAIQSNAR  231

Query  261  AQLKFNKLLQWAGVPQGATADEKIAALRSVSAEQLIA-----WND-----LLMSPIWDPK  310
             + K  +L +  G P   +A E +  LRS  AE+L+              +   P+ D  
Sbjct  232  QRAK--ELAKLVGCPTSDSA-ELVECLRSKPAEELLDAQLKLLVYGSVPFVPFGPVVDGD  288

Query  311  WFVGHSSPTSPLD--SAEPFPNWVQGIVVGTMRDELSIFGLERFWQTKAMVK---SSLNH  365
            +      P  P +   +  FP  V  +++G  +DE  +F          ++K     L  
Sbjct  289  FL-----PEHPEELLKSGNFPK-VP-LLIGVTKDEGLLF-AAYILDNVDILKALEEKLLR  340

Query  366  SLS-------LPSDPDFSTEVLNEYGILEAGSDT--EAVRGFIRVATDACFSRLP-YNLA  415
            SL        L   P+  +  L E  +     D    + R  + + TD  F   P    A
Sbjct  341  SLLIDLLYLLLVDLPEEISAALREEYLDWGDRDDPETSRRALVELLTDYLF-NCPVIRFA  399

Query  416  RACDSPDSPYLYVYRFDQVDEERNSPLRGKAFHVLDNTYLCRYPAVAGPAAPRSCQATAD  475
                S  +P +Y+Y FD        P      H  +  Y+   P V             D
Sbjct  400  DLHASRGTP-VYMYSFDYRGSSLRYPKWVGVDHGDELPYVFGTPFVGALLFT-----EED  453

Query  476  A-FSRMILCHTY--------------GEAPWEPYN  495
               SR ++  TY              G   W PY 
Sbjct  454  EKLSRKMM--TYWTNFAKTGNPNGPEGLPKWPPYT  486



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00006633

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00000469

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             212     1e-62


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 212 bits (541),  Expect = 1e-62, Method: Composition-based stats.
 Identities = 147/515 (29%), Positives = 211/515 (41%), Gaps = 105/515 (20%)

Query  34   GVAHFLGVQFARIP---ARFRQAELVHPL--VM---MYGPISPQPPDNSRESRQHLFVGA  85
             V  FLG+ +A  P    RF+  E   P   V     +GP  PQ  D +      L    
Sbjct  24   PVYAFLGIPYAEPPVGELRFQPPEPPEPWTGVRDATKFGPRCPQNGDLTSPGSSGL----  79

Query  86   PAANPKQSEFDCLRLNIYTPRVVISSEEKVPVLVWIHGGGWAIENGNADFSGDFLVRHSV  145
                 + SE DCL LN+YTP+ +  ++ K+PV+VWIHGGG+   +G+  + G +L     
Sbjct  80   -----EGSE-DCLYLNVYTPKELKENKNKLPVMVWIHGGGFMFGSGS-LYDGSYLAAE--  130

Query  146  ENKKPIVFVSINYRLGLLGFLSSSELSEEAAQYGEVGWANQGLHDQRLALLWVRQLFHEV  205
             +   ++ V+INYRLG LGFLS+    +EA   G     N GL DQ LAL WV++     
Sbjct  131  GD---VIVVTINYRLGPLGFLST--GDDEAP--G-----NYGLLDQVLALRWVQE-----  173

Query  206  RNHIHLFGGDGSNVTIAGESAGAWSVLAHLRSD--QPLFQRAIIQSAP---SWTMILPEE  260
              +I  FGGD + VT+ GESAGA SV   L S   + LF RAI+ S      W +     
Sbjct  174  --NIASFGGDPNRVTLFGESAGAASVSLLLLSPLSKGLFHRAILMSGSALSPWAIQSNAR  231

Query  261  AQLKFNKLLQWAGVPQGATADEKIAALRSVSAEQLIA-----WND-----LLMSPIWDPK  310
             + K  +L +  G P   +A E +  LRS  AE+L+              +   P+ D  
Sbjct  232  QRAK--ELAKLVGCPTSDSA-ELVECLRSKPAEELLDAQLKLLVYGSVPFVPFGPVVDGD  288

Query  311  WFVGHSSPTSPLD--SAEPFPNWVQGIVVGTMRDELSIFGLERFWQTKAMVK---SSLNH  365
            +      P  P +   +  FP  V  +++G  +DE  +F          ++K     L  
Sbjct  289  FL-----PEHPEELLKSGNFPK-VP-LLIGVTKDEGLLF-AAYILDNVDILKALEEKLLR  340

Query  366  SLS-------LPSDPDFSTEVLNEYGILEAGSDT--EAVRGFIRVATDACFSRLP-YNLA  415
            SL        L   P+  +  L E  +     D    + R  + + TD  F   P    A
Sbjct  341  SLLIDLLYLLLVDLPEEISAALREEYLDWGDRDDPETSRRALVELLTDYLF-NCPVIRFA  399

Query  416  RACDSPDSPYLYVYRFDQVDEERNSPLRGKAFHVLDNTYLCRYPAVAGPAAPRSCQATAD  475
                S  +P +Y+Y FD        P      H  +  Y+   P V             D
Sbjct  400  DLHASRGTP-VYMYSFDYRGSSLRYPKWVGVDHGDELPYVFGTPFVGALLFT-----EED  453

Query  476  A-FSRMILCHTY--------------GEAPWEPYN  495
               SR ++  TY              G   W PY 
Sbjct  454  EKLSRKMM--TYWTNFAKTGNPNGPEGLPKWPPYT  486



Lambda      K        H        a         alpha
   0.320    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690414096


Query= TCONS_00006634

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0834    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00000468

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             212     3e-62


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 212 bits (541),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 147/515 (29%), Positives = 211/515 (41%), Gaps = 105/515 (20%)

Query  80   GVAHFLGVQFARIP---ARFRQAELVHPL--VM---MYGPISPQPPDNSRESRQHLFVGA  131
             V  FLG+ +A  P    RF+  E   P   V     +GP  PQ  D +      L    
Sbjct  24   PVYAFLGIPYAEPPVGELRFQPPEPPEPWTGVRDATKFGPRCPQNGDLTSPGSSGL----  79

Query  132  PAANPKQSEFDCLRLNIYTPRVVISSEEKVPVLVWIHGGGWAIENGNADFSGDFLVRHSV  191
                 + SE DCL LN+YTP+ +  ++ K+PV+VWIHGGG+   +G+  + G +L     
Sbjct  80   -----EGSE-DCLYLNVYTPKELKENKNKLPVMVWIHGGGFMFGSGS-LYDGSYLAAE--  130

Query  192  ENKKPIVFVSINYRLGLLGFLSSSELSEEAAQYGEVGWANQGLHDQRLALLWVRQLFHEV  251
             +   ++ V+INYRLG LGFLS+    +EA   G     N GL DQ LAL WV++     
Sbjct  131  GD---VIVVTINYRLGPLGFLST--GDDEAP--G-----NYGLLDQVLALRWVQE-----  173

Query  252  RNHIHLFGGDGSNVTIAGESAGAWSVLAHLRSD--QPLFQRAIIQSAP---SWTMILPEE  306
              +I  FGGD + VT+ GESAGA SV   L S   + LF RAI+ S      W +     
Sbjct  174  --NIASFGGDPNRVTLFGESAGAASVSLLLLSPLSKGLFHRAILMSGSALSPWAIQSNAR  231

Query  307  AQLKFNKLLQWAGVPQGATADEKIAALRSVSAEQLIA-----WND-----LLMSPIWDPK  356
             + K  +L +  G P   +A E +  LRS  AE+L+              +   P+ D  
Sbjct  232  QRAK--ELAKLVGCPTSDSA-ELVECLRSKPAEELLDAQLKLLVYGSVPFVPFGPVVDGD  288

Query  357  WFVGHSSPTSPLD--SAEPFPNWVQGIVVGTMRDELSIFGLERFWQTKAMVK---SSLNH  411
            +      P  P +   +  FP  V  +++G  +DE  +F          ++K     L  
Sbjct  289  FL-----PEHPEELLKSGNFPK-VP-LLIGVTKDEGLLF-AAYILDNVDILKALEEKLLR  340

Query  412  SLS-------LPSDPDFSTEVLNEYGILEAGSDT--EAVRGFIRVATDACFSRLP-YNLA  461
            SL        L   P+  +  L E  +     D    + R  + + TD  F   P    A
Sbjct  341  SLLIDLLYLLLVDLPEEISAALREEYLDWGDRDDPETSRRALVELLTDYLF-NCPVIRFA  399

Query  462  RACDSPDSPYLYVYRFDQVDEERNSPLRGKAFHVLDNTYLCRYPAVAGPAAPRSCQATAD  521
                S  +P +Y+Y FD        P      H  +  Y+   P V             D
Sbjct  400  DLHASRGTP-VYMYSFDYRGSSLRYPKWVGVDHGDELPYVFGTPFVGALLFT-----EED  453

Query  522  A-FSRMILCHTY--------------GEAPWEPYN  541
               SR ++  TY              G   W PY 
Sbjct  454  EKLSRKMM--TYWTNFAKTGNPNGPEGLPKWPPYT  486



Lambda      K        H        a         alpha
   0.321    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 750202856


Query= TCONS_00000470

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00006635

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00000471

Length=289


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 327287968


Query= TCONS_00000472

Length=332


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00000473

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00000474

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00000475

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF42...  185     3e-57


>CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF4246).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and fungi. Proteins 
in this family are typically between 392 and 644 amino acids 
in length.
Length=421

 Score = 185 bits (471),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 70/177 (40%), Positives = 86/177 (49%), Gaps = 37/177 (21%)

Query  2    PSFSSKDWHTEGNVNEHIVTNAIYAFDLDNIMEPLVSFWQRLLLNSDRYVYDKIGAGDDP  61
            P +    WH EG +NEHIV  A+Y +D +NI E  +SF Q+                   
Sbjct  278  PEYPGGSWHVEGQLNEHIVATALYYYDSENITESRLSFRQQT------------------  319

Query  62   DDDESDFKAVEFSDPEDALLFEPDPEEKYACWDVKYIRRLFGFETIQHAPAWQELGKARM  121
                         D ED        E +Y   D  ++ R+FG E      A QELG    
Sbjct  320  -------------DAEDLFE-----ELEYEQDDHDWLERVFGIEN-GEGSAVQELGSVET  360

Query  122  PPGRLISFPNAFQYRMGPLELQDKTKPGHCRFLTLSLVDPMYRICSTRNVPPQQPDW  178
              GRL++FPN  Q+R+ P EL DKTKPGH + L L LVDP  RI ST NVPPQQ DW
Sbjct  361  KEGRLLAFPNTLQHRVSPFELADKTKPGHRKILALFLVDPHIRIISTANVPPQQRDW  417



Lambda      K        H        a         alpha
   0.320    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00000476

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00000477

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF42...  326     3e-109


>CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF4246).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and fungi. Proteins 
in this family are typically between 392 and 644 amino acids 
in length.
Length=421

 Score = 326 bits (837),  Expect = 3e-109, Method: Composition-based stats.
 Identities = 112/237 (47%), Positives = 151/237 (64%), Gaps = 6/237 (3%)

Query  46   TVRELEMLRLINSLTDRPGWEELVFDASTMQTWRSEAMAQFPLISPKTWDWCEAELRDKA  105
            TVREL MLR +N++TD+P W   VFD   +  WR EA+A    I+ K WDWC AELRDKA
Sbjct  2    TVRELAMLRFMNAITDKPDWHRKVFDEEIVAKWRKEALADPWDITEKMWDWCIAELRDKA  61

Query  106  QRWQETGLIMVLNAASGVCKSDTIIPPSVAMEIQGFVNSALKESDGQMDWAPASNQQVWN  165
            + ++ETGL+ VL+++SGV KSDT++P  +  E++  V       +GQ DW P S++QV +
Sbjct  62   KIFEETGLVPVLDSSSGVVKSDTLVPEELREELKAAVAPLEDVPEGQKDWHPGSDEQVLD  121

Query  166  LIDPSLYPLVRERTRVLVSSGSVPLEKTLDAYGQGEAPPPLHEDRHDW--EVEKYIYSLR  223
            L+ PSL+PLV  RTRVL   G V LE  L++ GQGE  P   E       ++    +S +
Sbjct  122  LVHPSLFPLVYGRTRVLP-DGVVGLEDALESAGQGEVIPVPSETEIKSRADIPPRPWSDK  180

Query  224  YQWLPCEVEFCGPAGSTDVRITSYVNNLHPREQRPFYRVLESVISKTIEPWNQALIR  280
            +QWLPC+VEF    G   VRITSY+NNLHP + +  Y V+E +ISK I  WN+ L  
Sbjct  181  FQWLPCDVEFSEDGG---VRITSYINNLHPVKHKELYPVIEKLISKAIPLWNETLTP  234



Lambda      K        H        a         alpha
   0.318    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00000478

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00000479

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF42...  326     3e-109


>CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF4246).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and fungi. Proteins 
in this family are typically between 392 and 644 amino acids 
in length.
Length=421

 Score = 326 bits (837),  Expect = 3e-109, Method: Composition-based stats.
 Identities = 112/237 (47%), Positives = 151/237 (64%), Gaps = 6/237 (3%)

Query  46   TVRELEMLRLINSLTDRPGWEELVFDASTMQTWRSEAMAQFPLISPKTWDWCEAELRDKA  105
            TVREL MLR +N++TD+P W   VFD   +  WR EA+A    I+ K WDWC AELRDKA
Sbjct  2    TVRELAMLRFMNAITDKPDWHRKVFDEEIVAKWRKEALADPWDITEKMWDWCIAELRDKA  61

Query  106  QRWQETGLIMVLNAASGVCKSDTIIPPSVAMEIQGFVNSALKESDGQMDWAPASNQQVWN  165
            + ++ETGL+ VL+++SGV KSDT++P  +  E++  V       +GQ DW P S++QV +
Sbjct  62   KIFEETGLVPVLDSSSGVVKSDTLVPEELREELKAAVAPLEDVPEGQKDWHPGSDEQVLD  121

Query  166  LIDPSLYPLVRERTRVLVSSGSVPLEKTLDAYGQGEAPPPLHEDRHDW--EVEKYIYSLR  223
            L+ PSL+PLV  RTRVL   G V LE  L++ GQGE  P   E       ++    +S +
Sbjct  122  LVHPSLFPLVYGRTRVLP-DGVVGLEDALESAGQGEVIPVPSETEIKSRADIPPRPWSDK  180

Query  224  YQWLPCEVEFCGPAGSTDVRITSYVNNLHPREQRPFYRVLESVISKTIEPWNQALIR  280
            +QWLPC+VEF    G   VRITSY+NNLHP + +  Y V+E +ISK I  WN+ L  
Sbjct  181  FQWLPCDVEFSEDGG---VRITSYINNLHPVKHKELYPVIEKLISKAIPLWNETLTP  234



Lambda      K        H        a         alpha
   0.318    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00000480

Length=653
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF42...  539     0.0  


>CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF4246).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and fungi. Proteins 
in this family are typically between 392 and 644 amino acids 
in length.
Length=421

 Score = 539 bits (1391),  Expect = 0.0, Method: Composition-based stats.
 Identities = 200/559 (36%), Positives = 272/559 (49%), Gaps = 142/559 (25%)

Query  33   TVRELEMLRLINSLTDRPGWEELVFDASTMQTWRSEAMAQFPLISPKTWDWCEAELRDKA  92
            TVREL MLR +N++TD+P W   VFD   +  WR EA+A    I+ K WDWC AELRDKA
Sbjct  2    TVRELAMLRFMNAITDKPDWHRKVFDEEIVAKWRKEALADPWDITEKMWDWCIAELRDKA  61

Query  93   QRWQETGLIMVLNAASGVCKSDTIIPPSVAMEIQGFVNSALKESDGQMDWAPASNQQVWN  152
            + ++ETGL+ VL+++SGV KSDT++P  +  E++  V       +GQ DW P S++QV +
Sbjct  62   KIFEETGLVPVLDSSSGVVKSDTLVPEELREELKAAVAPLEDVPEGQKDWHPGSDEQVLD  121

Query  153  LIDPSLYPLVRERTRVLVSSGSVPLEKTLDAYGQGEAPPPLHEDRHDW--EVEKYIYSLR  210
            L+ PSL+PLV  RTRVL   G V LE  L++ GQGE  P   E       ++    +S +
Sbjct  122  LVHPSLFPLVYGRTRVLP-DGVVGLEDALESAGQGEVIPVPSETEIKSRADIPPRPWSDK  180

Query  211  YQWLPCEVEFCGPAGSTDVRITSYVNNLHPREQRPFYRVLESVISKTIEPWNQALIRLAF  270
            +QWLPC+VEF    G   VRITSY+NNLHP + +  Y V+E +ISK I  WN+ L     
Sbjct  181  FQWLPCDVEFSEDGG---VRITSYINNLHPVKHKELYPVIEKLISKAIPLWNETLTP---  234

Query  271  AGPLWAGREPMRIRTFGVEWDNRYPQWAEDLPTTLDVDKSTEDYPRALARLKEYLSLPEY  330
                                                                        
Sbjct       ------------------------------------------------------------  

Query  331  GLKVQWSYNSTREIPADWEATLSLREVVNIKYSRMFRFQHSEPGTTYSYEDWKAGRTAHA  390
                                                +F   EPGT +             
Sbjct  235  ------------------------------------KFVLPEPGTAF-------------  245

Query  391  IKSHEIKDPMVHNEILRAKDEVDHQFQTVKLQDEFREKGLQIIVKLGGIELAPDNPSFLG  450
                                   H+   V L+++FR++GLQ+IVKL  IEL P+ P + G
Sbjct  246  -----------------------HEPYPVDLREDFRDRGLQVIVKLANIELTPEKPEYPG  282

Query  451  EDWHVDGLANEHIAGVALYCFDLGNVANPRISFAHEISMDADDFSFSYFNWDIPYLERLF  510
              WHV+G  NEHI   ALY +D  N+   R+SF  +   +       Y   D  +LER+F
Sbjct  283  GSWHVEGQLNEHIVATALYYYDSENITESRLSFRQQTDAEDLFEELEYEQDDHDWLERVF  342

Query  511  GVQN-EKPSFQELGSVSIRQGGLIAFPNCIYHRLESFELVDKARPGRCRFLTLWLVDPYY  569
            G++N E  + QELGSV  ++G L+AFPN + HR+  FEL DK +PG  + L L+LVDP+ 
Sbjct  343  GIENGEGSAVQELGSVETKEGRLLAFPNTLQHRVSPFELADKTKPGHRKILALFLVDPHI  402

Query  570  RIRSTRNVPPQRLDWWEQE  588
            RI ST NVPPQ+ DWW +E
Sbjct  403  RIISTANVPPQQRDWWAEE  421



Lambda      K        H        a         alpha
   0.319    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 825882400


Query= TCONS_00000481

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF42...  289     1e-95


>CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF4246).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and fungi. Proteins 
in this family are typically between 392 and 644 amino acids 
in length.
Length=421

 Score = 289 bits (742),  Expect = 1e-95, Method: Composition-based stats.
 Identities = 100/218 (46%), Positives = 135/218 (62%), Gaps = 6/218 (3%)

Query  11   WEELVFDASTMQTWRSEAMAQFPLISPKTWDWCEAELRDKAQRWQETGLIMVLNAASGVC  70
            W   VFD   +  WR EA+A    I+ K WDWC AELRDKA+ ++ETGL+ VL+++SGV 
Sbjct  21   WHRKVFDEEIVAKWRKEALADPWDITEKMWDWCIAELRDKAKIFEETGLVPVLDSSSGVV  80

Query  71   KSDTIIPPSVAMEIQGFVNSALKESDGQMDWAPASNQQVWNLIDPSLYPLVRERTRVLVS  130
            KSDT++P  +  E++  V       +GQ DW P S++QV +L+ PSL+PLV  RTRVL  
Sbjct  81   KSDTLVPEELREELKAAVAPLEDVPEGQKDWHPGSDEQVLDLVHPSLFPLVYGRTRVLP-  139

Query  131  SGSVPLEKTLDAYGQGEAPPPLHEDRHDW--EVEKYIYSLRYQWLPCEVEFCGPAGSTDV  188
             G V LE  L++ GQGE  P   E       ++    +S ++QWLPC+VEF    G   V
Sbjct  140  DGVVGLEDALESAGQGEVIPVPSETEIKSRADIPPRPWSDKFQWLPCDVEFSEDGG---V  196

Query  189  RITSYVNNLHPREQRPFYRVLESVISKTIEPWNQALIR  226
            RITSY+NNLHP + +  Y V+E +ISK I  WN+ L  
Sbjct  197  RITSYINNLHPVKHKELYPVIEKLISKAIPLWNETLTP  234



Lambda      K        H        a         alpha
   0.318    0.133    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00006636

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397980 pfam04104, DNA_primase_lrg, Eukaryotic and archaeal DN...  142     2e-43


>CDD:397980 pfam04104, DNA_primase_lrg, Eukaryotic and archaeal DNA primase, 
large subunit.  DNA primase is the polymerase that synthesizes 
small RNA primers for the Okazaki fragments made during 
discontinuous DNA replication. DNA primase is a heterodimer 
of two subunits, the small subunit Pri1 (48 kDa in yeast), 
and the large subunit Pri2 (58 kDa in the yeast S. cerevisiae). 
The large subunit of DNA primase forms interactions with 
the small subunit and the structure implicates that it is 
not directly involved in catalysis, but plays roles in correctly 
positioning the primase/DNA complex, and in the transfer 
of RNA to DNA polymerase.
Length=222

 Score = 142 bits (360),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 55/104 (53%), Positives = 66/104 (63%), Gaps = 7/104 (7%)

Query  1    MRSLHMTLRKNNHLKHFGRLQYTLFLKGIGLSLEECIIFWRQSFKGFTDDEFNSRYKYNI  60
            MR+L   LR+  HLKH GR Q  LFLKGIGLSL+E + FWR++F   T ++F+  Y+YNI
Sbjct  109  MRNLLEGLRRGGHLKHEGRFQLGLFLKGIGLSLDEILEFWREAFTR-TVEDFDKEYRYNI  167

Query  61   RHAYGDVGGDVNRRGRGYPPYSCQKILNDSNPGVGQTHGCPYRH  104
            RH YG  G   N     Y P SC KILN   PG G  HGCP+R 
Sbjct  168  RHNYGLEGKRTN-----YSPPSCAKILNL-PPGRGDAHGCPFRA  205



Lambda      K        H        a         alpha
   0.322    0.141    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00000482

Length=172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395448 pfam00565, SNase, Staphylococcal nuclease homolog. Pre...  81.6    3e-21


>CDD:395448 pfam00565, SNase, Staphylococcal nuclease homolog.  Present in 
all three domains of cellular life. Four copies in the transcriptional 
coactivator p100: these, however, appear to lack 
the active site residues of Staphylococcal nuclease. Positions 
14 (Asp-21), 34 (Arg-35), 39 (Asp-40), 42 (Glu-43) and 
110 (Arg-87) [SNase numbering in parentheses] are thought to 
be involved in substrate-binding and catalysis.
Length=106

 Score = 81.6 bits (202),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 40/118 (34%), Positives = 59/118 (50%), Gaps = 13/118 (11%)

Query  23   IRLAGIDAPELAHFGRPEQPFAREAHQWLTSYLFGRRVRAYIHRPDQYQRAVASVYVRRL  82
            +RL GIDAPE A    P QPF +EA ++L   + G++V       D+Y R +  VY+   
Sbjct  2    VRLVGIDAPETAKPNTPVQPFGKEAKEFLKKLVLGKKVVVLEFDKDKYGRTLGYVYL---  58

Query  83   LDFPPFRRRDVSYEMLKRGLATVYEAKIGAEFGGEAMERKYKKAEWWAKLRGVGLWKD  140
                    ++++ E++K GLA VY+A     F       +   AE  AK +  GLW D
Sbjct  59   ------NGKNINEELVKEGLAWVYKA-YPPNFKHYD---ELLAAEEEAKKKKKGLWSD  106



Lambda      K        H        a         alpha
   0.322    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00000483

Length=172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395448 pfam00565, SNase, Staphylococcal nuclease homolog. Pre...  81.6    3e-21


>CDD:395448 pfam00565, SNase, Staphylococcal nuclease homolog.  Present in 
all three domains of cellular life. Four copies in the transcriptional 
coactivator p100: these, however, appear to lack 
the active site residues of Staphylococcal nuclease. Positions 
14 (Asp-21), 34 (Arg-35), 39 (Asp-40), 42 (Glu-43) and 
110 (Arg-87) [SNase numbering in parentheses] are thought to 
be involved in substrate-binding and catalysis.
Length=106

 Score = 81.6 bits (202),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 40/118 (34%), Positives = 59/118 (50%), Gaps = 13/118 (11%)

Query  23   IRLAGIDAPELAHFGRPEQPFAREAHQWLTSYLFGRRVRAYIHRPDQYQRAVASVYVRRL  82
            +RL GIDAPE A    P QPF +EA ++L   + G++V       D+Y R +  VY+   
Sbjct  2    VRLVGIDAPETAKPNTPVQPFGKEAKEFLKKLVLGKKVVVLEFDKDKYGRTLGYVYL---  58

Query  83   LDFPPFRRRDVSYEMLKRGLATVYEAKIGAEFGGEAMERKYKKAEWWAKLRGVGLWKD  140
                    ++++ E++K GLA VY+A     F       +   AE  AK +  GLW D
Sbjct  59   ------NGKNINEELVKEGLAWVYKA-YPPNFKHYD---ELLAAEEEAKKKKKGLWSD  106



Lambda      K        H        a         alpha
   0.322    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00000484

Length=172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395448 pfam00565, SNase, Staphylococcal nuclease homolog. Pre...  81.6    3e-21


>CDD:395448 pfam00565, SNase, Staphylococcal nuclease homolog.  Present in 
all three domains of cellular life. Four copies in the transcriptional 
coactivator p100: these, however, appear to lack 
the active site residues of Staphylococcal nuclease. Positions 
14 (Asp-21), 34 (Arg-35), 39 (Asp-40), 42 (Glu-43) and 
110 (Arg-87) [SNase numbering in parentheses] are thought to 
be involved in substrate-binding and catalysis.
Length=106

 Score = 81.6 bits (202),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 40/118 (34%), Positives = 59/118 (50%), Gaps = 13/118 (11%)

Query  23   IRLAGIDAPELAHFGRPEQPFAREAHQWLTSYLFGRRVRAYIHRPDQYQRAVASVYVRRL  82
            +RL GIDAPE A    P QPF +EA ++L   + G++V       D+Y R +  VY+   
Sbjct  2    VRLVGIDAPETAKPNTPVQPFGKEAKEFLKKLVLGKKVVVLEFDKDKYGRTLGYVYL---  58

Query  83   LDFPPFRRRDVSYEMLKRGLATVYEAKIGAEFGGEAMERKYKKAEWWAKLRGVGLWKD  140
                    ++++ E++K GLA VY+A     F       +   AE  AK +  GLW D
Sbjct  59   ------NGKNINEELVKEGLAWVYKA-YPPNFKHYD---ELLAAEEEAKKKKKGLWSD  106



Lambda      K        H        a         alpha
   0.322    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00006637

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        61.1    3e-13


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 61.1 bits (149),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 29/94 (31%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query  86   KPPGTAVELSLGAVAGAVAQIFTIPVAVITTRQQTQP---KGEKKGLIETGREVVNSEDG  142
                    L  G +AGA+A   T P+ V+ TR Q Q    K + +G+++  +++   E G
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEE-G  59

Query  143  WTGLWRGLKASLILVV-NPAITYGAYQRLKDIIF  175
              GL++GL  +L+ V    AI +G Y+ LK ++ 
Sbjct  60   IRGLYKGLLPNLLRVAPAAAIYFGTYETLKRLLL  93


 Score = 58.4 bits (142),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 37/73 (51%), Gaps = 7/73 (10%)

Query  7   RVKTRLQVQVKSDKTDGSDGTMHYESTLDAINKIVESEGIEGLYSGIVGSLIGVASTNFA  66
            VKTRLQVQ  S K+            LD   KI + EGI GLY G++ +L+ VA     
Sbjct  28  VVKTRLQVQGGSGKS-------KGRGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAI  80

Query  67  YFYWYSVVRSLYM  79
           YF  Y  ++ L +
Sbjct  81  YFGTYETLKRLLL  93



Lambda      K        H        a         alpha
   0.317    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00000485

Length=848
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459889 pfam00648, Peptidase_C2, Calpain family cysteine protease  107     3e-26


>CDD:459889 pfam00648, Peptidase_C2, Calpain family cysteine protease.  
Length=295

 Score = 107 bits (271),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 77/290 (27%), Positives = 126/290 (43%), Gaps = 47/290 (16%)

Query  161  WKRPSELLAHAGGDTLMMSVPEKTDLVQDVLTDCSVVASLCATTSRSERGLDKHYLPVVY  220
            WKRP E+ ++      ++    + D+ Q  L DC ++A++ + T   +  L++    VV 
Sbjct  27   WKRPKEICSNP---QFIVDGASRFDICQGELGDCWLLAAIASLTLNPKL-LER----VVP  78

Query  221  PCEYDTGRPKPAPSGRYVLRFYFNGCFRKVVIDDRLPSSKTSRSLYVVDRNNPNFLWPAL  280
            P   D    +   +G +  RF+  G +  VVIDDRLP+ +  + L+V    + N  W AL
Sbjct  79   P---DQSFEEN-YAGIFHFRFWRFGEWVDVVIDDRLPT-RNGKLLFV-HSRDKNEFWSAL  132

Query  281  VEKAYLKLRGGY-DFPGSNSGTDLWVLTGWIPEQVFLHHEDVTSDQIWRRLFRSFQYGDV  339
            +EKAY KL G Y    G ++   L   TG + E   L         ++  L ++ + G  
Sbjct  133  LEKAYAKLHGSYEALKGGSTSEALEDFTGGVAESYDLKEPP---PNLFEILLKALERGS-  188

Query  340  LLTIGTGKLTEKEEEELGL---VSEHDYAVLDMKE--FNGRRQMLVK--NPWAGVHTASG  392
            L+       +  EEE       V  H Y+V  +++    G +  L++  NPW       G
Sbjct  189  LMGCSIDATSAAEEEARTPNGLVKGHAYSVTGVRKVNLKGGKVRLIRLRNPW-------G  241

Query  393  RTE-------NSLE--SHAPHDRSSL-----SPGTFWMDCEMVFQNFENL  428
              E        S E  + +P ++  L       G FWM  E   + F +L
Sbjct  242  EVEWNGAWSDGSPEWQTVSPEEKEELGLTKKDDGEFWMSFEDFLKYFTDL  291



Lambda      K        H        a         alpha
   0.317    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1080942042


Query= TCONS_00006638

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00000486

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00006639

Length=805
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459889 pfam00648, Peptidase_C2, Calpain family cysteine protease  107     5e-26


>CDD:459889 pfam00648, Peptidase_C2, Calpain family cysteine protease.  
Length=295

 Score = 107 bits (269),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 77/290 (27%), Positives = 126/290 (43%), Gaps = 47/290 (16%)

Query  118  WKRPSELLAHAGGDTLMMSVPEKTDLVQDVLTDCSVVASLCATTSRSERGLDKHYLPVVY  177
            WKRP E+ ++      ++    + D+ Q  L DC ++A++ + T   +  L++    VV 
Sbjct  27   WKRPKEICSNP---QFIVDGASRFDICQGELGDCWLLAAIASLTLNPKL-LER----VVP  78

Query  178  PCEYDTGRPKPAPSGRYVLRFYFNGCFRKVVIDDRLPSSKTSRSLYVVDRNNPNFLWPAL  237
            P   D    +   +G +  RF+  G +  VVIDDRLP+ +  + L+V    + N  W AL
Sbjct  79   P---DQSFEEN-YAGIFHFRFWRFGEWVDVVIDDRLPT-RNGKLLFV-HSRDKNEFWSAL  132

Query  238  VEKAYLKLRGGY-DFPGSNSGTDLWVLTGWIPEQVFLHHEDVTSDQIWRRLFRSFQYGDV  296
            +EKAY KL G Y    G ++   L   TG + E   L         ++  L ++ + G  
Sbjct  133  LEKAYAKLHGSYEALKGGSTSEALEDFTGGVAESYDLKEPP---PNLFEILLKALERGS-  188

Query  297  LLTIGTGKLTEKEEEELGL---VSEHDYAVLDMKE--FNGRRQMLVK--NPWAGVHTASG  349
            L+       +  EEE       V  H Y+V  +++    G +  L++  NPW       G
Sbjct  189  LMGCSIDATSAAEEEARTPNGLVKGHAYSVTGVRKVNLKGGKVRLIRLRNPW-------G  241

Query  350  RTE-------NSLE--SHAPHDRSSL-----SPGTFWMDCEMVFQNFENL  385
              E        S E  + +P ++  L       G FWM  E   + F +L
Sbjct  242  EVEWNGAWSDGSPEWQTVSPEEKEELGLTKKDDGEFWMSFEDFLKYFTDL  291



Lambda      K        H        a         alpha
   0.318    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1034613072


Query= TCONS_00006640

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00000487

Length=480


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598144560


Query= TCONS_00000489

Length=805
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459889 pfam00648, Peptidase_C2, Calpain family cysteine protease  107     5e-26


>CDD:459889 pfam00648, Peptidase_C2, Calpain family cysteine protease.  
Length=295

 Score = 107 bits (269),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 77/290 (27%), Positives = 126/290 (43%), Gaps = 47/290 (16%)

Query  118  WKRPSELLAHAGGDTLMMSVPEKTDLVQDVLTDCSVVASLCATTSRSERGLDKHYLPVVY  177
            WKRP E+ ++      ++    + D+ Q  L DC ++A++ + T   +  L++    VV 
Sbjct  27   WKRPKEICSNP---QFIVDGASRFDICQGELGDCWLLAAIASLTLNPKL-LER----VVP  78

Query  178  PCEYDTGRPKPAPSGRYVLRFYFNGCFRKVVIDDRLPSSKTSRSLYVVDRNNPNFLWPAL  237
            P   D    +   +G +  RF+  G +  VVIDDRLP+ +  + L+V    + N  W AL
Sbjct  79   P---DQSFEEN-YAGIFHFRFWRFGEWVDVVIDDRLPT-RNGKLLFV-HSRDKNEFWSAL  132

Query  238  VEKAYLKLRGGY-DFPGSNSGTDLWVLTGWIPEQVFLHHEDVTSDQIWRRLFRSFQYGDV  296
            +EKAY KL G Y    G ++   L   TG + E   L         ++  L ++ + G  
Sbjct  133  LEKAYAKLHGSYEALKGGSTSEALEDFTGGVAESYDLKEPP---PNLFEILLKALERGS-  188

Query  297  LLTIGTGKLTEKEEEELGL---VSEHDYAVLDMKE--FNGRRQMLVK--NPWAGVHTASG  349
            L+       +  EEE       V  H Y+V  +++    G +  L++  NPW       G
Sbjct  189  LMGCSIDATSAAEEEARTPNGLVKGHAYSVTGVRKVNLKGGKVRLIRLRNPW-------G  241

Query  350  RTE-------NSLE--SHAPHDRSSL-----SPGTFWMDCEMVFQNFENL  385
              E        S E  + +P ++  L       G FWM  E   + F +L
Sbjct  242  EVEWNGAWSDGSPEWQTVSPEEKEELGLTKKDDGEFWMSFEDFLKYFTDL  291



Lambda      K        H        a         alpha
   0.318    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1034613072


Query= TCONS_00000488

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00000490

Length=480


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598144560


Query= TCONS_00000492

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461380 pfam04652, Vta1, Vta1 like. Vta1 (VPS20-associated pro...  210     5e-68
CDD:465647 pfam18097, Vta1_C, Vta1 C-terminal domain. This is the...  61.9    2e-13


>CDD:461380 pfam04652, Vta1, Vta1 like.  Vta1 (VPS20-associated protein 1) 
is a positive regulator of Vps4. Vps4 is an ATPase that is 
required in the multivesicular body (MVB) sorting pathway to 
dissociate the endosomal sorting complex required for transport 
(ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates 
its ATPase activity through its conserved Vta1/SBP1/LIP5 
region.
Length=133

 Score = 210 bits (536),  Expect = 5e-68, Method: Composition-based stats.
 Identities = 70/133 (53%), Positives = 92/133 (69%), Gaps = 0/133 (0%)

Query  19   ARAAQIERVKPVVAYWCNYWIANQIIERGLHKSDHEVEQYAMDLMEKLEQFRNENSDNDT  78
             RA ++E+  PVVAY+C  +   QI++ GLHK D EV  +   L++KLEQF+ E  DN+ 
Sbjct  1    KRAQELEKADPVVAYYCRLYAVQQILKLGLHKKDKEVRAFLTKLLDKLEQFKKELGDNEA  60

Query  79   VIDAVAANAYVEQFGLEVFNRADTTMRANKVTRQTADTFQAAATFLELCQIWNPLEPEIA  138
            + D VAA AYVE F L++FNRAD   RA + T+QTA TF AAATF E+ QI+  L+ EIA
Sbjct  61   ITDEVAAQAYVENFALKLFNRADKEDRAGRATKQTAKTFYAAATFFEVLQIFGELDEEIA  120

Query  139  AKIKFAKYHALRI  151
             KIK+AK+ A RI
Sbjct  121  KKIKYAKWKAARI  133


>CDD:465647 pfam18097, Vta1_C, Vta1 C-terminal domain.  This is the C-terminal 
domain of Vta1 proteins pfam04652. Structural and functional 
analysis indicate that this C-terminal domain promotes 
the ATP-dependent double ring assembly of Vps4. Furthermore, 
it has been shown that it is necessary and sufficient for 
protein dimerization. Mutations in Lys-299 and Lys-302 completely 
abolished the ability of Vta1 to stimulate the ATPase 
activity of Vps4 while mutation in Lys-322 had no effect.
Length=38

 Score = 61.9 bits (151),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 24/38 (63%), Positives = 29/38 (76%), Gaps = 0/38 (0%)

Query  382  EEAIALAQKHARWAVSALTFDDVDTAIKELRNSLKYLG  419
             + IA AQKHA++AVSAL FDDV+TAIK L  +LK L 
Sbjct  1    PDQIAQAQKHAKYAVSALQFDDVETAIKNLLKALKLLT  38



Lambda      K        H        a         alpha
   0.311    0.124    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00000491

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461380 pfam04652, Vta1, Vta1 like. Vta1 (VPS20-associated pro...  210     5e-68
CDD:465647 pfam18097, Vta1_C, Vta1 C-terminal domain. This is the...  61.9    2e-13


>CDD:461380 pfam04652, Vta1, Vta1 like.  Vta1 (VPS20-associated protein 1) 
is a positive regulator of Vps4. Vps4 is an ATPase that is 
required in the multivesicular body (MVB) sorting pathway to 
dissociate the endosomal sorting complex required for transport 
(ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates 
its ATPase activity through its conserved Vta1/SBP1/LIP5 
region.
Length=133

 Score = 210 bits (536),  Expect = 5e-68, Method: Composition-based stats.
 Identities = 70/133 (53%), Positives = 92/133 (69%), Gaps = 0/133 (0%)

Query  19   ARAAQIERVKPVVAYWCNYWIANQIIERGLHKSDHEVEQYAMDLMEKLEQFRNENSDNDT  78
             RA ++E+  PVVAY+C  +   QI++ GLHK D EV  +   L++KLEQF+ E  DN+ 
Sbjct  1    KRAQELEKADPVVAYYCRLYAVQQILKLGLHKKDKEVRAFLTKLLDKLEQFKKELGDNEA  60

Query  79   VIDAVAANAYVEQFGLEVFNRADTTMRANKVTRQTADTFQAAATFLELCQIWNPLEPEIA  138
            + D VAA AYVE F L++FNRAD   RA + T+QTA TF AAATF E+ QI+  L+ EIA
Sbjct  61   ITDEVAAQAYVENFALKLFNRADKEDRAGRATKQTAKTFYAAATFFEVLQIFGELDEEIA  120

Query  139  AKIKFAKYHALRI  151
             KIK+AK+ A RI
Sbjct  121  KKIKYAKWKAARI  133


>CDD:465647 pfam18097, Vta1_C, Vta1 C-terminal domain.  This is the C-terminal 
domain of Vta1 proteins pfam04652. Structural and functional 
analysis indicate that this C-terminal domain promotes 
the ATP-dependent double ring assembly of Vps4. Furthermore, 
it has been shown that it is necessary and sufficient for 
protein dimerization. Mutations in Lys-299 and Lys-302 completely 
abolished the ability of Vta1 to stimulate the ATPase 
activity of Vps4 while mutation in Lys-322 had no effect.
Length=38

 Score = 61.9 bits (151),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 24/38 (63%), Positives = 29/38 (76%), Gaps = 0/38 (0%)

Query  382  EEAIALAQKHARWAVSALTFDDVDTAIKELRNSLKYLG  419
             + IA AQKHA++AVSAL FDDV+TAIK L  +LK L 
Sbjct  1    PDQIAQAQKHAKYAVSALQFDDVETAIKNLLKALKLLT  38



Lambda      K        H        a         alpha
   0.311    0.124    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00000493

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461380 pfam04652, Vta1, Vta1 like. Vta1 (VPS20-associated pro...  132     1e-38
CDD:465647 pfam18097, Vta1_C, Vta1 C-terminal domain. This is the...  62.7    1e-13


>CDD:461380 pfam04652, Vta1, Vta1 like.  Vta1 (VPS20-associated protein 1) 
is a positive regulator of Vps4. Vps4 is an ATPase that is 
required in the multivesicular body (MVB) sorting pathway to 
dissociate the endosomal sorting complex required for transport 
(ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates 
its ATPase activity through its conserved Vta1/SBP1/LIP5 
region.
Length=133

 Score = 132 bits (335),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 47/84 (56%), Positives = 60/84 (71%), Gaps = 0/84 (0%)

Query  8    KFRNENSDNDTVIDAVAANAYVEQFGLEVFNRADTTMRANKVTRQTADTFQAAATFLELC  67
            +F+ E  DN+ + D VAA AYVE F L++FNRAD   RA + T+QTA TF AAATF E+ 
Sbjct  50   QFKKELGDNEAITDEVAAQAYVENFALKLFNRADKEDRAGRATKQTAKTFYAAATFFEVL  109

Query  68   QIWNPLEPEIAAKIKFAKYHALRI  91
            QI+  L+ EIA KIK+AK+ A RI
Sbjct  110  QIFGELDEEIAKKIKYAKWKAARI  133


>CDD:465647 pfam18097, Vta1_C, Vta1 C-terminal domain.  This is the C-terminal 
domain of Vta1 proteins pfam04652. Structural and functional 
analysis indicate that this C-terminal domain promotes 
the ATP-dependent double ring assembly of Vps4. Furthermore, 
it has been shown that it is necessary and sufficient for 
protein dimerization. Mutations in Lys-299 and Lys-302 completely 
abolished the ability of Vta1 to stimulate the ATPase 
activity of Vps4 while mutation in Lys-322 had no effect.
Length=38

 Score = 62.7 bits (153),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 24/38 (63%), Positives = 29/38 (76%), Gaps = 0/38 (0%)

Query  322  EEAIALAQKHARWAVSALTFDDVDTAIKELRNSLKYLG  359
             + IA AQKHA++AVSAL FDDV+TAIK L  +LK L 
Sbjct  1    PDQIAQAQKHAKYAVSALQFDDVETAIKNLLKALKLLT  38



Lambda      K        H        a         alpha
   0.310    0.124    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0941    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00000494

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00000495

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  90.4    1e-21


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 90.4 bits (225),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 88/243 (36%), Gaps = 34/243 (14%)

Query  11   VLIVGGLGFIGRHLALYIHENNLASEVRLVDKVLPQLAWLAPEFEEACSKDKFVQADASR  70
            +L+ G  GFIG HL   + E     EV  +D++                  +FV+ D + 
Sbjct  1    ILVTGATGFIGSHLVRRLLEKG--YEVIGLDRLTSASNTARLA------DLRFVEGDLTD  52

Query  71   EQHFPRIFDRANGEQFDYVINCGGE----TRHSQPDDVYELRSYNLTVALGREVARRGIR  126
                 ++       + D VI+             P+D  E  +   T+ L     + G++
Sbjct  53   RDALEKLLADV---RPDAVIHLAAVGGVGASIEDPEDFIE-ANVLGTLNLLEAARKAGVK  108

Query  127  SFVECSTAHVY-KPGSSPRKENDKLEPWH---------RLAKWKLKASDELKKIPGLNYC  176
             F+  S++ VY      P++E     P              +W + A        GL   
Sbjct  109  RFLFASSSEVYGDGAEIPQEETTLTGPLAPNSPYAAAKLAGEWLVLAYAAAY---GLRAV  165

Query  177  LLRLPHVYGEYDSGYFAMGICLARVHLDMETDLELLYTKNLKINT---LYVKDAASALWK  233
            +LRL +VYG  D+  F   + +  +   +     +L   +        LYV D A A+  
Sbjct  166  ILRLFNVYGPGDNEGFVSRV-IPALIRRILEGKPILLWGDGT-QRRDFLYVDDVARAILL  223

Query  234  AAE  236
            A E
Sbjct  224  ALE  226



Lambda      K        H        a         alpha
   0.318    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00000497

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460746 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase ...  357     2e-125
CDD:460030 pfam01028, Topoisom_I, Eukaryotic DNA topoisomerase I,...  250     1e-83 


>CDD:460746 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA 
binding fragment.  Topoisomerase I promotes the relaxation of 
DNA superhelical tension by introducing a transient single-stranded 
break in duplex DNA and are vital for the processes 
of replication, transcription, and recombination. This family 
may be more than one structural domain.
Length=213

 Score = 357 bits (919),  Expect = 2e-125, Method: Composition-based stats.
 Identities = 124/199 (62%), Positives = 150/199 (75%), Gaps = 11/199 (6%)

Query  1    MKYDGVPVTLHPEAEEVAGFFGSMLNATQHVENPTFQKNFFMDFKEVLEKTGGAKDPKGN  60
            +KYDG PV L PEAEEVA F+ +ML  T + +NP F KNFF DF++VL++ GG       
Sbjct  26   LKYDGKPVDLPPEAEEVATFYAAMLE-TDYAQNPVFNKNFFNDFRKVLKEKGG-------  77

Query  61   KIEIKEFSKCDFRPIFDYYDAKRIEKKNLPPAEKKRLKAEKDAAEAPYMYCLWDGRKQKV  120
               IK+F KCDF PI++Y++ ++ +KK +   EKK LK EK+  E PY YCL DGRK+KV
Sbjct  78   ---IKDFEKCDFSPIYEYFEQEKEKKKAMSKEEKKALKEEKEKLEEPYGYCLVDGRKEKV  134

Query  121  GNFRVEPPALFRGRGEHPKTGRVKARVQPEQITINIGKDAPVPPPPEGHRWKEVKHDQEG  180
            GNFRVEPP LFRGRGEHPKTG++K RVQPE +TINIGKDAPVP PP GH+WKEV HD   
Sbjct  135  GNFRVEPPGLFRGRGEHPKTGKLKKRVQPEDVTINIGKDAPVPEPPPGHKWKEVVHDNTV  194

Query  181  TWLAMWQENINGNYKYVML  199
            TWLA W+ENING +KYVML
Sbjct  195  TWLASWKENINGQFKYVML  213


>CDD:460030 pfam01028, Topoisom_I, Eukaryotic DNA topoisomerase I, catalytic 
core.  Topoisomerase I promotes the relaxation of DNA superhelical 
tension by introducing a transient single-stranded 
break in duplex DNA and are vital for the processes of replication, 
transcription, and recombination.
Length=198

 Score = 250 bits (641),  Expect = 1e-83, Method: Composition-based stats.
 Identities = 95/133 (71%), Positives = 112/133 (84%), Gaps = 1/133 (1%)

Query  202  NSDVKGLSDYKKFEKARELKKHIDRIRKDYQKALKHELMVERQKATAVYLIDQFALRAGN  261
            +S +KG SD+KK+EKAR+LKKHID+IR+DY K LK + M ERQ+ATAVYLID+ ALR GN
Sbjct  1    SSKLKGESDWKKYEKARKLKKHIDKIREDYTKDLKSKDMKERQRATAVYLIDKLALRVGN  60

Query  262  EKGEDEAETVGCCSLKYENVTLKPPNKVIFDFLGKDSIRFYDEVEVDPQVFKNLKIFKKP  321
            EK EDEA+TVGCCSL+ E+V L PPN V FDFLGKDSIR+Y+ VEVD QVFKNLKIFKK 
Sbjct  61   EKDEDEADTVGCCSLRVEHVKLHPPNTVEFDFLGKDSIRYYNTVEVDLQVFKNLKIFKK-  119

Query  322  PKKEGDEIFDRLT  334
             KK GD++FDRL 
Sbjct  120  NKKPGDDLFDRLN  132



Lambda      K        H        a         alpha
   0.319    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00006643

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00000496

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460746 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase ...  357     2e-125
CDD:460030 pfam01028, Topoisom_I, Eukaryotic DNA topoisomerase I,...  250     1e-83 


>CDD:460746 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA 
binding fragment.  Topoisomerase I promotes the relaxation of 
DNA superhelical tension by introducing a transient single-stranded 
break in duplex DNA and are vital for the processes 
of replication, transcription, and recombination. This family 
may be more than one structural domain.
Length=213

 Score = 357 bits (919),  Expect = 2e-125, Method: Composition-based stats.
 Identities = 124/199 (62%), Positives = 150/199 (75%), Gaps = 11/199 (6%)

Query  1    MKYDGVPVTLHPEAEEVAGFFGSMLNATQHVENPTFQKNFFMDFKEVLEKTGGAKDPKGN  60
            +KYDG PV L PEAEEVA F+ +ML  T + +NP F KNFF DF++VL++ GG       
Sbjct  26   LKYDGKPVDLPPEAEEVATFYAAMLE-TDYAQNPVFNKNFFNDFRKVLKEKGG-------  77

Query  61   KIEIKEFSKCDFRPIFDYYDAKRIEKKNLPPAEKKRLKAEKDAAEAPYMYCLWDGRKQKV  120
               IK+F KCDF PI++Y++ ++ +KK +   EKK LK EK+  E PY YCL DGRK+KV
Sbjct  78   ---IKDFEKCDFSPIYEYFEQEKEKKKAMSKEEKKALKEEKEKLEEPYGYCLVDGRKEKV  134

Query  121  GNFRVEPPALFRGRGEHPKTGRVKARVQPEQITINIGKDAPVPPPPEGHRWKEVKHDQEG  180
            GNFRVEPP LFRGRGEHPKTG++K RVQPE +TINIGKDAPVP PP GH+WKEV HD   
Sbjct  135  GNFRVEPPGLFRGRGEHPKTGKLKKRVQPEDVTINIGKDAPVPEPPPGHKWKEVVHDNTV  194

Query  181  TWLAMWQENINGNYKYVML  199
            TWLA W+ENING +KYVML
Sbjct  195  TWLASWKENINGQFKYVML  213


>CDD:460030 pfam01028, Topoisom_I, Eukaryotic DNA topoisomerase I, catalytic 
core.  Topoisomerase I promotes the relaxation of DNA superhelical 
tension by introducing a transient single-stranded 
break in duplex DNA and are vital for the processes of replication, 
transcription, and recombination.
Length=198

 Score = 250 bits (641),  Expect = 1e-83, Method: Composition-based stats.
 Identities = 95/133 (71%), Positives = 112/133 (84%), Gaps = 1/133 (1%)

Query  202  NSDVKGLSDYKKFEKARELKKHIDRIRKDYQKALKHELMVERQKATAVYLIDQFALRAGN  261
            +S +KG SD+KK+EKAR+LKKHID+IR+DY K LK + M ERQ+ATAVYLID+ ALR GN
Sbjct  1    SSKLKGESDWKKYEKARKLKKHIDKIREDYTKDLKSKDMKERQRATAVYLIDKLALRVGN  60

Query  262  EKGEDEAETVGCCSLKYENVTLKPPNKVIFDFLGKDSIRFYDEVEVDPQVFKNLKIFKKP  321
            EK EDEA+TVGCCSL+ E+V L PPN V FDFLGKDSIR+Y+ VEVD QVFKNLKIFKK 
Sbjct  61   EKDEDEADTVGCCSLRVEHVKLHPPNTVEFDFLGKDSIRYYNTVEVDLQVFKNLKIFKK-  119

Query  322  PKKEGDEIFDRLT  334
             KK GD++FDRL 
Sbjct  120  NKKPGDDLFDRLN  132



Lambda      K        H        a         alpha
   0.319    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00000498

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459722 pfam00231, ATP-synt, ATP synthase                          210     3e-68


>CDD:459722 pfam00231, ATP-synt, ATP synthase.  
Length=285

 Score = 210 bits (538),  Expect = 3e-68, Method: Composition-based stats.
 Identities = 77/249 (31%), Positives = 132/249 (53%), Gaps = 23/249 (9%)

Query  30   TLREIEGRLKSIKNIEKITNTMKIVASTRLTRAQKAMDDSRVYGQTSNKVFEN-------  82
            +L+EI+ R+KS+K+ +KIT  MK+VA+ +L +AQ+A++ +R Y +   +V  +       
Sbjct  1    SLKEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEVLADLAAASPE  60

Query  83   ---AETKPLEDKKTLLVVASSDKGLCGGIHSGLSKATRRILQEN----PNADVVILGEKA  135
                  +  E KK  L+V +SD+GLCGG +S + KA R +++E         ++++G K 
Sbjct  61   DSHPLLERREVKKVGLIVITSDRGLCGGFNSNVIKAARALIEELLAEGKEVKLIVVGRKG  120

Query  136  KAQLSRSNADAIVMSFANVCKDIPTFADAQVIADQIAQLPTD--YASVKIIYNKFINAQS  193
            +    +   + +++ F     D PTF +A  IAD++           V ++YN+F++A S
Sbjct  121  RDYFKKRGYE-VILEFTGSLGDKPTFEEAAEIADELLDAFLAGEIDEVYLVYNRFVSAIS  179

Query  194  YEPSTVEAYS---EEAITKSANLATFEVEDS---VLANLREYALANSLYWAMAEGHACEI  247
             EP+  +      EE   +  +LA +E E S   VL  L    L + +Y A+ E  A E 
Sbjct  180  QEPTVEQLLPLDPEEEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQ  239

Query  248  SARRNAMEA  256
            +AR  AM+ 
Sbjct  240  AARMTAMDN  248



Lambda      K        H        a         alpha
   0.314    0.126    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00000499

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459722 pfam00231, ATP-synt, ATP synthase                          195     2e-62


>CDD:459722 pfam00231, ATP-synt, ATP synthase.  
Length=285

 Score = 195 bits (499),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 127/241 (53%), Gaps = 23/241 (10%)

Query  30   TLREIEGRLKSIKNIEKITNTMKIVASTRLTRAQKAMDDSRVYGQTSNKVFEN-------  82
            +L+EI+ R+KS+K+ +KIT  MK+VA+ +L +AQ+A++ +R Y +   +V  +       
Sbjct  1    SLKEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEVLADLAAASPE  60

Query  83   ---AETKPLEDKKTLLVVASSDKGLCGGIHSGLSKATRRILQEN----PNADVVILGEKA  135
                  +  E KK  L+V +SD+GLCGG +S + KA R +++E         ++++G K 
Sbjct  61   DSHPLLERREVKKVGLIVITSDRGLCGGFNSNVIKAARALIEELLAEGKEVKLIVVGRKG  120

Query  136  KAQLSRSNADAIVMSFANVCKDIPTFADAQVIADQIAQLPTD--YASVKIIYNKFINAQS  193
            +    +   + +++ F     D PTF +A  IAD++           V ++YN+F++A S
Sbjct  121  RDYFKKRGYE-VILEFTGSLGDKPTFEEAAEIADELLDAFLAGEIDEVYLVYNRFVSAIS  179

Query  194  YEPSTVEAYS---EEAITKSANLATFEVEDS---VLANLREYALANSLYWAMAEGHACEI  247
             EP+  +      EE   +  +LA +E E S   VL  L    L + +Y A+ E  A E 
Sbjct  180  QEPTVEQLLPLDPEEEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQ  239

Query  248  S  248
            +
Sbjct  240  A  240



Lambda      K        H        a         alpha
   0.313    0.125    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00000500

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459722 pfam00231, ATP-synt, ATP synthase                          279     8e-95


>CDD:459722 pfam00231, ATP-synt, ATP synthase.  
Length=285

 Score = 279 bits (717),  Expect = 8e-95, Method: Composition-based stats.
 Identities = 101/286 (35%), Positives = 163/286 (57%), Gaps = 23/286 (8%)

Query  30   TLREIEGRLKSIKNIEKITNTMKIVASTRLTRAQKAMDDSRVYGQTSNKVFEN-------  82
            +L+EI+ R+KS+K+ +KIT  MK+VA+ +L +AQ+A++ +R Y +   +V  +       
Sbjct  1    SLKEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEVLADLAAASPE  60

Query  83   ---AETKPLEDKKTLLVVASSDKGLCGGIHSGLSKATRRILQEN----PNADVVILGEKA  135
                  +  E KK  L+V +SD+GLCGG +S + KA R +++E         ++++G K 
Sbjct  61   DSHPLLERREVKKVGLIVITSDRGLCGGFNSNVIKAARALIEELLAEGKEVKLIVVGRKG  120

Query  136  KAQLSRSNADAIVMSFANVCKDIPTFADAQVIADQIAQLPTD--YASVKIIYNKFINAQS  193
            +    +   + +++ F     D PTF +A  IAD++           V ++YN+F++A S
Sbjct  121  RDYFKKRGYE-VILEFTGSLGDKPTFEEAAEIADELLDAFLAGEIDEVYLVYNRFVSAIS  179

Query  194  YEPSTVEAYS---EEAITKSANLATFEVEDS---VLANLREYALANSLYWAMAEGHACEI  247
             EP+  +      EE   +  +LA +E E S   VL  L    L + +Y A+ E  A E 
Sbjct  180  QEPTVEQLLPLDPEEEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQ  239

Query  248  SARRNAMENASKNAGEMINKFQILYNRQRQAAITGELVEIITGATA  293
            +AR  AM+NA+ NAGE+I+K  + YNR RQAAIT EL+EI++GA A
Sbjct  240  AARMTAMDNATDNAGELIDKLTLQYNRARQAAITQELIEIVSGAEA  285



Lambda      K        H        a         alpha
   0.313    0.125    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00000501

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459722 pfam00231, ATP-synt, ATP synthase                          279     8e-95


>CDD:459722 pfam00231, ATP-synt, ATP synthase.  
Length=285

 Score = 279 bits (717),  Expect = 8e-95, Method: Composition-based stats.
 Identities = 101/286 (35%), Positives = 163/286 (57%), Gaps = 23/286 (8%)

Query  30   TLREIEGRLKSIKNIEKITNTMKIVASTRLTRAQKAMDDSRVYGQTSNKVFEN-------  82
            +L+EI+ R+KS+K+ +KIT  MK+VA+ +L +AQ+A++ +R Y +   +V  +       
Sbjct  1    SLKEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEVLADLAAASPE  60

Query  83   ---AETKPLEDKKTLLVVASSDKGLCGGIHSGLSKATRRILQEN----PNADVVILGEKA  135
                  +  E KK  L+V +SD+GLCGG +S + KA R +++E         ++++G K 
Sbjct  61   DSHPLLERREVKKVGLIVITSDRGLCGGFNSNVIKAARALIEELLAEGKEVKLIVVGRKG  120

Query  136  KAQLSRSNADAIVMSFANVCKDIPTFADAQVIADQIAQLPTD--YASVKIIYNKFINAQS  193
            +    +   + +++ F     D PTF +A  IAD++           V ++YN+F++A S
Sbjct  121  RDYFKKRGYE-VILEFTGSLGDKPTFEEAAEIADELLDAFLAGEIDEVYLVYNRFVSAIS  179

Query  194  YEPSTVEAYS---EEAITKSANLATFEVEDS---VLANLREYALANSLYWAMAEGHACEI  247
             EP+  +      EE   +  +LA +E E S   VL  L    L + +Y A+ E  A E 
Sbjct  180  QEPTVEQLLPLDPEEEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQ  239

Query  248  SARRNAMENASKNAGEMINKFQILYNRQRQAAITGELVEIITGATA  293
            +AR  AM+NA+ NAGE+I+K  + YNR RQAAIT EL+EI++GA A
Sbjct  240  AARMTAMDNATDNAGELIDKLTLQYNRARQAAITQELIEIVSGAEA  285



Lambda      K        H        a         alpha
   0.313    0.125    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00000502

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459722 pfam00231, ATP-synt, ATP synthase                          220     4e-72


>CDD:459722 pfam00231, ATP-synt, ATP synthase.  
Length=285

 Score = 220 bits (564),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 84/272 (31%), Positives = 140/272 (51%), Gaps = 37/272 (14%)

Query  30   TLREIEGRLKSIKNIEKITNTMKIVASTRLTRAQKAMDDSRVYGQTSNKVFEN-------  82
            +L+EI+ R+KS+K+ +KIT  MK+VA+ +L +AQ+A++ +R Y +   +V  +       
Sbjct  1    SLKEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEVLADLAAASPE  60

Query  83   ---AETKPLEDKKTLLVVASSDKGLCGGIHSGLSKATRRILQEN----PNADVVILGEKA  135
                  +  E KK  L+V +SD+GLCGG +S + KA R +++E         ++++G K 
Sbjct  61   DSHPLLERREVKKVGLIVITSDRGLCGGFNSNVIKAARALIEELLAEGKEVKLIVVGRKG  120

Query  136  KAQLSRSNADAIVMSFANVCKDIPTFADAQVIADQIAQLPTD--YASVKIIYNKFINAQS  193
            +    +   + +++ F     D PTF +A  IAD++           V ++YN+F++A S
Sbjct  121  RDYFKKRGYE-VILEFTGSLGDKPTFEEAAEIADELLDAFLAGEIDEVYLVYNRFVSAIS  179

Query  194  YEPSTVEAYS---EEAITKSANLATFEVEDS---VLANLREYALANSLYWAMAEGHACEI  247
             EP+  +      EE   +  +LA +E E S   VL  L    L + +Y A+ E  A E 
Sbjct  180  QEPTVEQLLPLDPEEEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQ  239

Query  248  SARRNAME--------------ILYNRQRQAA  265
            +AR  AM+              + YNR RQAA
Sbjct  240  AARMTAMDNATDNAGELIDKLTLQYNRARQAA  271



Lambda      K        H        a         alpha
   0.314    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00006644

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459722 pfam00231, ATP-synt, ATP synthase                          219     2e-71


>CDD:459722 pfam00231, ATP-synt, ATP synthase.  
Length=285

 Score = 219 bits (560),  Expect = 2e-71, Method: Composition-based stats.
 Identities = 81/260 (31%), Positives = 139/260 (53%), Gaps = 23/260 (9%)

Query  30   TLREIEGRLKSIKNIEKITNTMKIVASTRLTRAQKAMDDSRVYGQTSNKVFEN-------  82
            +L+EI+ R+KS+K+ +KIT  MK+VA+ +L +AQ+A++ +R Y +   +V  +       
Sbjct  1    SLKEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEVLADLAAASPE  60

Query  83   ---AETKPLEDKKTLLVVASSDKGLCGGIHSGLSKATRRILQEN----PNADVVILGEKA  135
                  +  E KK  L+V +SD+GLCGG +S + KA R +++E         ++++G K 
Sbjct  61   DSHPLLERREVKKVGLIVITSDRGLCGGFNSNVIKAARALIEELLAEGKEVKLIVVGRKG  120

Query  136  KAQLSRSNADAIVMSFANVCKDIPTFADAQVIADQIAQLPTD--YASVKIIYNKFINAQS  193
            +    +   + +++ F     D PTF +A  IAD++           V ++YN+F++A S
Sbjct  121  RDYFKKRGYE-VILEFTGSLGDKPTFEEAAEIADELLDAFLAGEIDEVYLVYNRFVSAIS  179

Query  194  YEPSTVEAYS---EEAITKSANLATFEVEDS---VLANLREYALANSLYWAMAEGHACEI  247
             EP+  +      EE   +  +LA +E E S   VL  L    L + +Y A+ E  A E 
Sbjct  180  QEPTVEQLLPLDPEEEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQ  239

Query  248  SVSRNAMEATSKNAGEMINK  267
            +    AM+  + NAGE+I+K
Sbjct  240  AARMTAMDNATDNAGELIDK  259



Lambda      K        H        a         alpha
   0.312    0.124    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00000505

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459722 pfam00231, ATP-synt, ATP synthase                          267     9e-90


>CDD:459722 pfam00231, ATP-synt, ATP synthase.  
Length=285

 Score = 267 bits (684),  Expect = 9e-90, Method: Composition-based stats.
 Identities = 97/286 (34%), Positives = 160/286 (56%), Gaps = 23/286 (8%)

Query  30   TLREIEGRLKSIKNIEKITNTMKIVASTRLTRAQKAMDDSRVYGQTSNKVFEN-------  82
            +L+EI+ R+KS+K+ +KIT  MK+VA+ +L +AQ+A++ +R Y +   +V  +       
Sbjct  1    SLKEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEVLADLAAASPE  60

Query  83   ---AETKPLEDKKTLLVVASSDKGLCGGIHSGLSKATRRILQEN----PNADVVILGEKA  135
                  +  E KK  L+V +SD+GLCGG +S + KA R +++E         ++++G K 
Sbjct  61   DSHPLLERREVKKVGLIVITSDRGLCGGFNSNVIKAARALIEELLAEGKEVKLIVVGRKG  120

Query  136  KAQLSRSNADAIVMSFANVCKDIPTFADAQVIADQIAQLPTD--YASVKIIYNKFINAQS  193
            +    +   + +++ F     D PTF +A  IAD++           V ++YN+F++A S
Sbjct  121  RDYFKKRGYE-VILEFTGSLGDKPTFEEAAEIADELLDAFLAGEIDEVYLVYNRFVSAIS  179

Query  194  YEPSTVEAYS---EEAITKSANLATFEVEDS---VLANLREYALANSLYWAMAEGHACEI  247
             EP+  +      EE   +  +LA +E E S   VL  L    L + +Y A+ E  A E 
Sbjct  180  QEPTVEQLLPLDPEEEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQ  239

Query  248  SVSRNAMEASSKNAGEMINKFQILYNRQRQAAITGELVEIITGATA  293
            +    AM+ ++ NAGE+I+K  + YNR RQAAIT EL+EI++GA A
Sbjct  240  AARMTAMDNATDNAGELIDKLTLQYNRARQAAITQELIEIVSGAEA  285



Lambda      K        H        a         alpha
   0.313    0.125    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00000504

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459722 pfam00231, ATP-synt, ATP synthase                          233     5e-77


>CDD:459722 pfam00231, ATP-synt, ATP synthase.  
Length=285

 Score = 233 bits (597),  Expect = 5e-77, Method: Composition-based stats.
 Identities = 85/260 (33%), Positives = 143/260 (55%), Gaps = 23/260 (9%)

Query  30   TLREIEGRLKSIKNIEKITNTMKIVASTRLTRAQKAMDDSRVYGQTSNKVFEN-------  82
            +L+EI+ R+KS+K+ +KIT  MK+VA+ +L +AQ+A++ +R Y +   +V  +       
Sbjct  1    SLKEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEVLADLAAASPE  60

Query  83   ---AETKPLEDKKTLLVVASSDKGLCGGIHSGLSKATRRILQEN----PNADVVILGEKA  135
                  +  E KK  L+V +SD+GLCGG +S + KA R +++E         ++++G K 
Sbjct  61   DSHPLLERREVKKVGLIVITSDRGLCGGFNSNVIKAARALIEELLAEGKEVKLIVVGRKG  120

Query  136  KAQLSRSNADAIVMSFANVCKDIPTFADAQVIADQIAQLPTD--YASVKIIYNKFINAQS  193
            +    +   + +++ F     D PTF +A  IAD++           V ++YN+F++A S
Sbjct  121  RDYFKKRGYE-VILEFTGSLGDKPTFEEAAEIADELLDAFLAGEIDEVYLVYNRFVSAIS  179

Query  194  YEPSTVEAYS---EEAITKSANLATFEVEDS---VLANLREYALANSLYWAMAEGHACEI  247
             EP+  +      EE   +  +LA +E E S   VL  L    L + +Y A+ E  A E 
Sbjct  180  QEPTVEQLLPLDPEEEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQ  239

Query  248  SARRNAMENASKNAGEMINK  267
            +AR  AM+NA+ NAGE+I+K
Sbjct  240  AARMTAMDNATDNAGELIDK  259



Lambda      K        H        a         alpha
   0.313    0.125    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00000503

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459722 pfam00231, ATP-synt, ATP synthase                          235     9e-78


>CDD:459722 pfam00231, ATP-synt, ATP synthase.  
Length=285

 Score = 235 bits (603),  Expect = 9e-78, Method: Composition-based stats.
 Identities = 85/260 (33%), Positives = 143/260 (55%), Gaps = 23/260 (9%)

Query  30   TLREIEGRLKSIKNIEKITNTMKIVASTRLTRAQKAMDDSRVYGQTSNKVFEN-------  82
            +L+EI+ R+KS+K+ +KIT  MK+VA+ +L +AQ+A++ +R Y +   +V  +       
Sbjct  1    SLKEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEVLADLAAASPE  60

Query  83   ---AETKPLEDKKTLLVVASSDKGLCGGIHSGLSKATRRILQEN----PNADVVILGEKA  135
                  +  E KK  L+V +SD+GLCGG +S + KA R +++E         ++++G K 
Sbjct  61   DSHPLLERREVKKVGLIVITSDRGLCGGFNSNVIKAARALIEELLAEGKEVKLIVVGRKG  120

Query  136  KAQLSRSNADAIVMSFANVCKDIPTFADAQVIADQIAQLPTD--YASVKIIYNKFINAQS  193
            +    +   + +++ F     D PTF +A  IAD++           V ++YN+F++A S
Sbjct  121  RDYFKKRGYE-VILEFTGSLGDKPTFEEAAEIADELLDAFLAGEIDEVYLVYNRFVSAIS  179

Query  194  YEPSTVEAYS---EEAITKSANLATFEVEDS---VLANLREYALANSLYWAMAEGHACEI  247
             EP+  +      EE   +  +LA +E E S   VL  L    L + +Y A+ E  A E 
Sbjct  180  QEPTVEQLLPLDPEEEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQ  239

Query  248  SARRNAMENASKNAGEMINK  267
            +AR  AM+NA+ NAGE+I+K
Sbjct  240  AARMTAMDNATDNAGELIDK  259



Lambda      K        H        a         alpha
   0.313    0.125    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00000506

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459722 pfam00231, ATP-synt, ATP synthase                          200     1e-64


>CDD:459722 pfam00231, ATP-synt, ATP synthase.  
Length=285

 Score = 200 bits (510),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 77/285 (27%), Positives = 121/285 (42%), Gaps = 97/285 (34%)

Query  30   TLREIEGRLKSIKNIEKITNTMKIVASTRLTRAQKAMDDSRVYGQTSNKVFEN-------  82
            +L+EI+ R+KS+K+ +KIT  MK+VA+ +L +AQ+A++ +R Y +   +V  +       
Sbjct  1    SLKEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEVLADLAAASPE  60

Query  83   ---AETKPLEDKKTLLVVASSDKGLCGGIHSGLSKATRRILQENPN--------------  125
                  +  E KK  L+V +SD+GLCGG +S + KA R +++E                 
Sbjct  61   DSHPLLERREVKKVGLIVITSDRGLCGGFNSNVIKAARALIEELLAEGKEVKLIVVGRKG  120

Query  126  -------------------------ADVEAI--------------------TKSANLATF  140
                                      +   I                     +  +  + 
Sbjct  121  RDYFKKRGYEVILEFTGSLGDKPTFEEAAEIADELLDAFLAGEIDEVYLVYNRFVSAISQ  180

Query  141  EV----------------------------EDSVLANLREYALANSLYWAMAEGHACEIS  172
            E                              + VL  L    L + +Y A+ E  A E +
Sbjct  181  EPTVEQLLPLDPEEEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQA  240

Query  173  ARRNAMENASKNAGEMINKFQILYNRQRQAAITGELVEIITGATA  217
            AR  AM+NA+ NAGE+I+K  + YNR RQAAIT EL+EI++GA A
Sbjct  241  ARMTAMDNATDNAGELIDKLTLQYNRARQAAITQELIEIVSGAEA  285



Lambda      K        H        a         alpha
   0.313    0.125    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00006645

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459722 pfam00231, ATP-synt, ATP synthase                          158     9e-50


>CDD:459722 pfam00231, ATP-synt, ATP synthase.  
Length=285

 Score = 158 bits (403),  Expect = 9e-50, Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 86/152 (57%), Gaps = 8/152 (5%)

Query  2    SFANVCKDIPTFADAQVIADQIAQLPTD--YASVKIIYNKFINAQSYEPSTVEAYS---E  56
             F     D PTF +A  IAD++           V ++YN+F++A S EP+  +      E
Sbjct  134  EFTGSLGDKPTFEEAAEIADELLDAFLAGEIDEVYLVYNRFVSAISQEPTVEQLLPLDPE  193

Query  57   EAITKSANLATFEVEDS---VLANLREYALANSLYWAMAEGHACEISARRNAMENASKNA  113
            E   +  +LA +E E S   VL  L    L + +Y A+ E  A E +AR  AM+NA+ NA
Sbjct  194  EEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQAARMTAMDNATDNA  253

Query  114  GEMINKFQILYNRQRQAAITGELVEIITGATA  145
            GE+I+K  + YNR RQAAIT EL+EI++GA A
Sbjct  254  GELIDKLTLQYNRARQAAITQELIEIVSGAEA  285



Lambda      K        H        a         alpha
   0.314    0.125    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00000507

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  72.5    1e-16


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 72.5 bits (179),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 22/85 (26%)

Query  8   NCYEILGINSDATIKDINTAYKKLALKHHPDKTGGEESSHIEFQKVQAPEQDTEDSKPIM  67
           + YEILG++ DA+ ++I  AY+KLALK+HPDK  G+  +  +F++               
Sbjct  1   DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKE---------------  45

Query  68  LTKSDHQIQQAVEILRDPVRRKNHD  92
                  I +A E+L DP +R  +D
Sbjct  46  -------INEAYEVLSDPEKRAIYD  63



Lambda      K        H        a         alpha
   0.312    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00000508

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    452     1e-159


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 452 bits (1167),  Expect = 1e-159, Method: Composition-based stats.
 Identities = 172/295 (58%), Positives = 207/295 (70%), Gaps = 9/295 (3%)

Query  1    MTMALGGSTNGVLHFLAMARTADVNLTLDDVQRVSNKIPFIADLAPSGKYYMADLYDIGG  60
            + MALGGSTN VLH LA+AR A V+LTLDD  R+S K+P +ADL PSGKY M D +  GG
Sbjct  224  VDMALGGSTNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLKPSGKYLMEDFHRAGG  283

Query  61   IPSVQKLLIAAGLLDGDIPTVTGKTLAENVASFPSLPQDQVIIRPLDNPIKTTGHLQILR  120
            +P+V K L+ A LL GD+ TVTGKTL EN+A      QD  +IRPLDNPI  TG L +L+
Sbjct  284  VPAVLKELLDA-LLHGDVLTVTGKTLGENLADAEVRDQD--VIRPLDNPISPTGGLAVLK  340

Query  121  GNLAPGGAVAKITGK--EGTKFTGKARVFDKEYQLNDALTQGKIPRGENLVLIVRYEGPK  178
            GNLAP GAV K +    E   F G ARVFD E     A+  GKI  G+  V+++RYEGPK
Sbjct  341  GNLAPDGAVVKTSAVDPEMLVFEGPARVFDSEEDALAAILDGKIKAGD--VVVIRYEGPK  398

Query  179  GGPGMPEQLKASAALMGAKLN-NVALITDGRYSGASHGFIVGHIVPEAAVGGPIAIVRDD  237
            GGPGMPE L  ++AL+GA L  +VALITDGR+SGAS G  +GH+ PEAAVGGPIA+VRD 
Sbjct  399  GGPGMPEMLTPTSALLGAGLGKDVALITDGRFSGASRGPSIGHVSPEAAVGGPIALVRDG  458

Query  238  DVITIDAETNTINMHVSDEEIQQRLKEWKPPVPHV-TRGVLAKYARLVGDASHGA  291
            D+I ID    T+++ VSDEE+  R   WKPP P V  RG LAKYA+LV  AS GA
Sbjct  459  DIIRIDIPNRTLDLLVSDEELAARRAAWKPPEPKVKGRGYLAKYAKLVSSASEGA  513



Lambda      K        H        a         alpha
   0.317    0.137    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00000509

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    669     0.0  


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 669 bits (1729),  Expect = 0.0, Method: Composition-based stats.
 Identities = 253/482 (52%), Positives = 325/482 (67%), Gaps = 29/482 (6%)

Query  1    MRFSLQTREIIADSVETVTCAQYHDACIAIPGCDKNMPGVVMGMARHNRPSLMIYGGTIQ  60
            MR+SL +RE+IADS+E +  A   D  + I GCDK +PG++M  AR N P++ + GG + 
Sbjct  57   MRYSLPSRELIADSIEEMLRAHPFDGLVLIGGCDKIVPGMLMAAARLNIPAIFVSGGPML  116

Query  61   VGYSNLLRKRVNVSTCFEAAGAYAYDTLRQPDDGGDTSKSKDEIMDDIERHACPSAGACG  120
             G S         +  FEA GAYA   +           S++E+++ IER ACP  G+CG
Sbjct  117  PGGS--------GTDEFEAVGAYAAGKI-----------SEEELLE-IERAACPGCGSCG  156

Query  121  GMFTANTMATAIESMGLSLPGSSSTPASSPSKMRECVKAAEAIKTCMEKNIRPRDLLTKR  180
            GM TANTMA   E++GLSLPGS++ PA S  ++R   +A   I   +E++I+PRD+LT++
Sbjct  157  GMGTANTMACLAEALGLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIKPRDILTRK  216

Query  181  SFENALVMTMALGGSTNGVLHFLAMARTADVNLTLDDVQRVSNKIPFIADLAPSGKYYMA  240
            +FENA+V+ MALGGSTN VLH LA+AR A V+LTLDD  R+S K+P +ADL PSGKY M 
Sbjct  217  AFENAIVVDMALGGSTNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLKPSGKYLME  276

Query  241  DLYDIGGIPSVQKLLIAAGLLDGDIPTVTGKTLAENVASFPSLPQDQVIIRPLDNPIKTT  300
            D +  GG+P+V K L+ A LL GD+ TVTGKTL EN+A      QD  +IRPLDNPI  T
Sbjct  277  DFHRAGGVPAVLKELLDA-LLHGDVLTVTGKTLGENLADAEVRDQD--VIRPLDNPISPT  333

Query  301  GHLQILRGNLAPGGAVAKITGK--EGTKFTGKARVFDKEYQLNDALTQGKIPRGENLVLI  358
            G L +L+GNLAP GAV K +    E   F G ARVFD E     A+  GKI  G+  V++
Sbjct  334  GGLAVLKGNLAPDGAVVKTSAVDPEMLVFEGPARVFDSEEDALAAILDGKIKAGD--VVV  391

Query  359  VRYEGPKGGPGMPEQLKASAALMGAKLN-NVALITDGRYSGASHGFIVGHIVPEAAVGGP  417
            +RYEGPKGGPGMPE L  ++AL+GA L  +VALITDGR+SGAS G  +GH+ PEAAVGGP
Sbjct  392  IRYEGPKGGPGMPEMLTPTSALLGAGLGKDVALITDGRFSGASRGPSIGHVSPEAAVGGP  451

Query  418  IAIVRDDDVITIDAETNTINMHVSDEEIQQRLKEWKPPVPHV-TRGVLAKYARLVGDASH  476
            IA+VRD D+I ID    T+++ VSDEE+  R   WKPP P V  RG LAKYA+LV  AS 
Sbjct  452  IALVRDGDIIRIDIPNRTLDLLVSDEELAARRAAWKPPEPKVKGRGYLAKYAKLVSSASE  511

Query  477  GA  478
            GA
Sbjct  512  GA  513



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593513872


Query= TCONS_00000510

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    600     0.0  


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 600 bits (1550),  Expect = 0.0, Method: Composition-based stats.
 Identities = 235/482 (49%), Positives = 297/482 (62%), Gaps = 60/482 (12%)

Query  1    MRFSLQTREIIADSVETVTCAQYHDACIAIPGCDKNMPGVVMGMARHNRPSLMIYGGTIQ  60
            MR+SL +RE+IADS+E +  A   D  + I GCDK +PG++M  AR N P++ + GG + 
Sbjct  57   MRYSLPSRELIADSIEEMLRAHPFDGLVLIGGCDKIVPGMLMAAARLNIPAIFVSGGPML  116

Query  61   VGYSNLLRKRVNVSTCFEAAGAYAYDTLRQPDDGGDTSKSKDEIMDDIERHACPSAGACG  120
             G S         +  FEA GAYA   +           S++E+++ IER ACP  G+CG
Sbjct  117  PGGS--------GTDEFEAVGAYAAGKI-----------SEEELLE-IERAACPGCGSCG  156

Query  121  GMFTANTMATAIESMGLSLPGSSSTPASSPSKMRECVKAAEAIK----------------  164
            GM TANTMA   E++GLSLPGS++ PA S  ++R   +A   I                 
Sbjct  157  GMGTANTMACLAEALGLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIKPRDILTRK  216

Query  165  ---------------TNGVLHFLAMARTADVNLTLDDVQRVSNKIPFIADLAPSGKYYMA  209
                           TN VLH LA+AR A V+LTLDD  R+S K+P +ADL PSGKY M 
Sbjct  217  AFENAIVVDMALGGSTNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLKPSGKYLME  276

Query  210  DLYDIGGIPSVQKLLIAAGLLDGDIPTVTGKTLAENVASFPSLPQDQVIIRPLDNPIKTT  269
            D +  GG+P+V K L+ A LL GD+ TVTGKTL EN+A      QD  +IRPLDNPI  T
Sbjct  277  DFHRAGGVPAVLKELLDA-LLHGDVLTVTGKTLGENLADAEVRDQD--VIRPLDNPISPT  333

Query  270  GHLQILRGNLAPGGAVAKITGK--EGTKFTGKARVFDKEYQLNDALTQGKIPRGENLVLI  327
            G L +L+GNLAP GAV K +    E   F G ARVFD E     A+  GKI  G+  V++
Sbjct  334  GGLAVLKGNLAPDGAVVKTSAVDPEMLVFEGPARVFDSEEDALAAILDGKIKAGD--VVV  391

Query  328  VRYEGPKGGPGMPEQLKASAALMGAKLN-NVALITDGRYSGASHGFIVGHIVPEAAVGGP  386
            +RYEGPKGGPGMPE L  ++AL+GA L  +VALITDGR+SGAS G  +GH+ PEAAVGGP
Sbjct  392  IRYEGPKGGPGMPEMLTPTSALLGAGLGKDVALITDGRFSGASRGPSIGHVSPEAAVGGP  451

Query  387  IAIVRDDDVITIDAETNTINMHVSDEEIQQRLKEWKPPVPHV-TRGVLAKYARLVGDASH  445
            IA+VRD D+I ID    T+++ VSDEE+  R   WKPP P V  RG LAKYA+LV  AS 
Sbjct  452  IALVRDGDIIRIDIPNRTLDLLVSDEELAARRAAWKPPEPKVKGRGYLAKYAKLVSSASE  511

Query  446  GA  447
            GA
Sbjct  512  GA  513



Lambda      K        H        a         alpha
   0.317    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00006646

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    608     0.0  


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 608 bits (1571),  Expect = 0.0, Method: Composition-based stats.
 Identities = 237/482 (49%), Positives = 306/482 (63%), Gaps = 56/482 (12%)

Query  1    MRFSLQTREIIADSVETVTCAQYHDACIAIPGCDKNMPGVVMGMARHNRPSLMIYGGTIQ  60
            MR+SL +RE+IADS+E +  A   D  + I GCDK +PG++M  AR N P++ + GG + 
Sbjct  57   MRYSLPSRELIADSIEEMLRAHPFDGLVLIGGCDKIVPGMLMAAARLNIPAIFVSGGPML  116

Query  61   VGYSNLLRKRVNVSTCFEAAGAYAYDTLRQPDDGGDTSKSKDEIMDDIERHACPSAGACG  120
             G S         +  FEA GAYA   +           S++E+++ IER ACP  G+CG
Sbjct  117  PGGS--------GTDEFEAVGAYAAGKI-----------SEEELLE-IERAACPGCGSCG  156

Query  121  GMFTANTMATAIESMGLSLPGSSSTPASSPSKMRECVKAAEAIKTCMEKNIRPRDLLTKR  180
            GM TANTMA   E++GLSLPGS++ PA S  ++R   +A   I   +E++I+PRD+LT++
Sbjct  157  GMGTANTMACLAEALGLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIKPRDILTRK  216

Query  181  SFENALVMTMALGGSTNGVLHFLAMARTADVNLTL-------------------------  215
            +FENA+V+ MALGGSTN VLH LA+AR A V+LTL                         
Sbjct  217  AFENAIVVDMALGGSTNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLKPSGKYLME  276

Query  216  --YDIGGIPSVQKLLIAAGLLDGDIPTVTGKTLAENVASFPSLPQDQVIIRPLDNPIKTT  273
              +  GG+P+V K L+ A LL GD+ TVTGKTL EN+A      QD  +IRPLDNPI  T
Sbjct  277  DFHRAGGVPAVLKELLDA-LLHGDVLTVTGKTLGENLADAEVRDQD--VIRPLDNPISPT  333

Query  274  GHLQILRGNLAPGGAVAKITGK--EGTKFTGKARVFDKEYQLNDALTQGKIPRGENLVLI  331
            G L +L+GNLAP GAV K +    E   F G ARVFD E     A+  GKI  G+  V++
Sbjct  334  GGLAVLKGNLAPDGAVVKTSAVDPEMLVFEGPARVFDSEEDALAAILDGKIKAGD--VVV  391

Query  332  VRYEGPKGGPGMPEQLKASAALMGAKLN-NVALITDGRYSGASHGFIVGHIVPEAAVGGP  390
            +RYEGPKGGPGMPE L  ++AL+GA L  +VALITDGR+SGAS G  +GH+ PEAAVGGP
Sbjct  392  IRYEGPKGGPGMPEMLTPTSALLGAGLGKDVALITDGRFSGASRGPSIGHVSPEAAVGGP  451

Query  391  IAIVRDDDVITIDAETNTINMHVSDEEIQQRLKEWKPPVPHV-TRGVLAKYARLVGDASH  449
            IA+VRD D+I ID    T+++ VSDEE+  R   WKPP P V  RG LAKYA+LV  AS 
Sbjct  452  IALVRDGDIIRIDIPNRTLDLLVSDEELAARRAAWKPPEPKVKGRGYLAKYAKLVSSASE  511

Query  450  GA  451
            GA
Sbjct  512  GA  513



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00006647

Length=425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    539     0.0  


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 539 bits (1392),  Expect = 0.0, Method: Composition-based stats.
 Identities = 219/482 (45%), Positives = 278/482 (58%), Gaps = 87/482 (18%)

Query  1    MRFSLQTREIIADSVETVTCAQYHDACIAIPGCDKNMPGVVMGMARHNRPSLMIYGGTIQ  60
            MR+SL +RE+IADS+E +  A   D  + I GCDK +PG++M  AR N P++ + GG + 
Sbjct  57   MRYSLPSRELIADSIEEMLRAHPFDGLVLIGGCDKIVPGMLMAAARLNIPAIFVSGGPML  116

Query  61   VGYSNLLRKRVNVSTCFEAAGAYAYDTLRQPDDGGDTSKSKDEIMDDIERHACPSAGACG  120
             G S         +  FEA GAYA   +           S++E+++ IER ACP  G+CG
Sbjct  117  PGGS--------GTDEFEAVGAYAAGKI-----------SEEELLE-IERAACPGCGSCG  156

Query  121  GMFTANTMATAIESMGLSLPGSSSTPASSPSKMRECVKAAEAIK----------------  164
            GM TANTMA   E++GLSLPGS++ PA S  ++R   +A   I                 
Sbjct  157  GMGTANTMACLAEALGLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIKPRDILTRK  216

Query  165  ---------------TNGVLHFLAMARTADVNLTL-------------------------  184
                           TN VLH LA+AR A V+LTL                         
Sbjct  217  AFENAIVVDMALGGSTNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLKPSGKYLME  276

Query  185  --YDIGGIPSVQKLLIAAGLLDGDIPTVTGKTLAENVASFPSLPQDQVIIRPLDNPIKTT  242
              +  GG+P+V K L+ A LL GD+ TVTGKTL EN+A      QD  +IRPLDNPI  T
Sbjct  277  DFHRAGGVPAVLKELLDA-LLHGDVLTVTGKTLGENLADAEVRDQD--VIRPLDNPISPT  333

Query  243  GHLQILRGNLAPGGAVAKITGK--EGTKFTGKARVFDKEYQLNDALTQGKIPRGENLVLI  300
            G L +L+GNLAP GAV K +    E   F G ARVFD E     A+  GKI  G+  V++
Sbjct  334  GGLAVLKGNLAPDGAVVKTSAVDPEMLVFEGPARVFDSEEDALAAILDGKIKAGD--VVV  391

Query  301  VRYEGPKGGPGMPEQLKASAALMGAKLN-NVALITDGRYSGASHGFIVGHIVPEAAVGGP  359
            +RYEGPKGGPGMPE L  ++AL+GA L  +VALITDGR+SGAS G  +GH+ PEAAVGGP
Sbjct  392  IRYEGPKGGPGMPEMLTPTSALLGAGLGKDVALITDGRFSGASRGPSIGHVSPEAAVGGP  451

Query  360  IAIVRDDDVITIDAETNTINMHVSDEEIQQRLKEWKPPVPHV-TRGVLAKYARLVGDASH  418
            IA+VRD D+I ID    T+++ VSDEE+  R   WKPP P V  RG LAKYA+LV  AS 
Sbjct  452  IALVRDGDIIRIDIPNRTLDLLVSDEELAARRAAWKPPEPKVKGRGYLAKYAKLVSSASE  511

Query  419  GA  420
            GA
Sbjct  512  GA  513



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521922912


Query= TCONS_00000511

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00000513

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family. Th...  140     2e-38


>CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family.  This family 
includes both bacterial phospholipase C enzymes EC:3.1.4.3, 
but also eukaryotic acid phosphatases EC:3.1.3.2.
Length=348

 Score = 140 bits (354),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 71/258 (28%), Positives = 110/258 (43%), Gaps = 44/258 (17%)

Query  70   DENMKWLASQGILLTN--FYAVTHPSEPNY----CAAVGGDTFG----MDNDNFNQIPAN  119
            D    WL +Q   L +  F +V  P++PN            + G    +D +        
Sbjct  106  DIPFLWLLAQEFTLCDRYFCSVPGPTQPNRLYLVSGTSDPGSHGGPSLVDPNTTPVKGFP  165

Query  120  VSTVADLLDTKNIAWGEYQEHLPYPGFQGFNYSNQETYVNDYVRKHNPLVLYDSVTKNST  179
              T+ D L    I+WG YQE       Q FNY         YVRKHNPL  +        
Sbjct  166  WPTIPDRLSQAGISWGIYQEAFLDNHHQPFNY---------YVRKHNPLPSFRDALHQYG  216

Query  180  RLRQIKNFTSFEDDLANKKLPQWAFITPNMTNDAHDT-NITFGAKWERSWIAPLLNNSYF  238
                   F+ F+ D+ N KLPQ +++ PN  ND H   +I  G KW ++ +  LL++   
Sbjct  217  LAPH--YFSDFKKDVKNGKLPQVSWVIPNGANDEHPGHDIAAGQKWIKNVLEALLSSPQ-  273

Query  239  MNDTLILLTFDEDGTY------------------SKSNKIFSVLLGGAIPDELKGTQDDT  280
             N TL+++T+DE+G +                     N++ ++++    P    GT D T
Sbjct  274  WNKTLLIVTYDENGGFYDHVPPPKAPVPGIPGPYGLGNRVPTLVIS---PWAKPGTVDHT  330

Query  281  FYTHYSVIASVSANWGLP  298
             + H SV+  +   +GLP
Sbjct  331  TFDHTSVLRFIEKRFGLP  348



Lambda      K        H        a         alpha
   0.313    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00000512

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family. Th...  140     2e-38


>CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family.  This family 
includes both bacterial phospholipase C enzymes EC:3.1.4.3, 
but also eukaryotic acid phosphatases EC:3.1.3.2.
Length=348

 Score = 140 bits (354),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 71/258 (28%), Positives = 110/258 (43%), Gaps = 44/258 (17%)

Query  70   DENMKWLASQGILLTN--FYAVTHPSEPNY----CAAVGGDTFG----MDNDNFNQIPAN  119
            D    WL +Q   L +  F +V  P++PN            + G    +D +        
Sbjct  106  DIPFLWLLAQEFTLCDRYFCSVPGPTQPNRLYLVSGTSDPGSHGGPSLVDPNTTPVKGFP  165

Query  120  VSTVADLLDTKNIAWGEYQEHLPYPGFQGFNYSNQETYVNDYVRKHNPLVLYDSVTKNST  179
              T+ D L    I+WG YQE       Q FNY         YVRKHNPL  +        
Sbjct  166  WPTIPDRLSQAGISWGIYQEAFLDNHHQPFNY---------YVRKHNPLPSFRDALHQYG  216

Query  180  RLRQIKNFTSFEDDLANKKLPQWAFITPNMTNDAHDT-NITFGAKWERSWIAPLLNNSYF  238
                   F+ F+ D+ N KLPQ +++ PN  ND H   +I  G KW ++ +  LL++   
Sbjct  217  LAPH--YFSDFKKDVKNGKLPQVSWVIPNGANDEHPGHDIAAGQKWIKNVLEALLSSPQ-  273

Query  239  MNDTLILLTFDEDGTY------------------SKSNKIFSVLLGGAIPDELKGTQDDT  280
             N TL+++T+DE+G +                     N++ ++++    P    GT D T
Sbjct  274  WNKTLLIVTYDENGGFYDHVPPPKAPVPGIPGPYGLGNRVPTLVIS---PWAKPGTVDHT  330

Query  281  FYTHYSVIASVSANWGLP  298
             + H SV+  +   +GLP
Sbjct  331  TFDHTSVLRFIEKRFGLP  348



Lambda      K        H        a         alpha
   0.313    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00000514

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family. Th...  67.9    1e-13


>CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family.  This family 
includes both bacterial phospholipase C enzymes EC:3.1.4.3, 
but also eukaryotic acid phosphatases EC:3.1.3.2.
Length=348

 Score = 67.9 bits (166),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 36/135 (27%), Positives = 50/135 (37%), Gaps = 21/135 (16%)

Query  130  DENMKWLASQGILLTN--FYAVTHPSEPNY----CAAVGGDTFG----MDNDNFNQIPAN  179
            D    WL +Q   L +  F +V  P++PN            + G    +D +        
Sbjct  106  DIPFLWLLAQEFTLCDRYFCSVPGPTQPNRLYLVSGTSDPGSHGGPSLVDPNTTPVKGFP  165

Query  180  VSTVADLLDTKNIAWGEYQEHLPYPGFQGFNYSNQETYVNDYVRKHNPLVLYDSVTKNST  239
              T+ D L    I+WG YQE       Q FNY         YVRKHNPL  +        
Sbjct  166  WPTIPDRLSQAGISWGIYQEAFLDNHHQPFNY---------YVRKHNPLPSFRDALHQYG  216

Query  240  RLRQIKNFTSFEDDL  254
                   F+ F+ D+
Sbjct  217  LAPH--YFSDFKKDV  229



Lambda      K        H        a         alpha
   0.316    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00000515

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family. Th...  140     2e-38


>CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family.  This family 
includes both bacterial phospholipase C enzymes EC:3.1.4.3, 
but also eukaryotic acid phosphatases EC:3.1.3.2.
Length=348

 Score = 140 bits (355),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 71/258 (28%), Positives = 110/258 (43%), Gaps = 44/258 (17%)

Query  71   DENMKWLASQGILLTN--FYAVTHPSEPNY----CAAVGGDTFG----MDNDNFNQIPAN  120
            D    WL +Q   L +  F +V  P++PN            + G    +D +        
Sbjct  106  DIPFLWLLAQEFTLCDRYFCSVPGPTQPNRLYLVSGTSDPGSHGGPSLVDPNTTPVKGFP  165

Query  121  VSTVADLLDTKNIAWGEYQEHLPYPGFQGFNYSNQETYVNDYVRKHNPLVLYDSVTKNST  180
              T+ D L    I+WG YQE       Q FNY         YVRKHNPL  +        
Sbjct  166  WPTIPDRLSQAGISWGIYQEAFLDNHHQPFNY---------YVRKHNPLPSFRDALHQYG  216

Query  181  RLRQIKNFTSFEDDLANKKLPQWAFITPNMTNDAHDT-NITFGAKWERSWIAPLLNNSYF  239
                   F+ F+ D+ N KLPQ +++ PN  ND H   +I  G KW ++ +  LL++   
Sbjct  217  LAPH--YFSDFKKDVKNGKLPQVSWVIPNGANDEHPGHDIAAGQKWIKNVLEALLSSPQ-  273

Query  240  MNDTLILLTFDEDGTY------------------SKSNKIFSVLLGGAIPDELKGTQDDT  281
             N TL+++T+DE+G +                     N++ ++++    P    GT D T
Sbjct  274  WNKTLLIVTYDENGGFYDHVPPPKAPVPGIPGPYGLGNRVPTLVIS---PWAKPGTVDHT  330

Query  282  FYTHYSVIASVSANWGLP  299
             + H SV+  +   +GLP
Sbjct  331  TFDHTSVLRFIEKRFGLP  348



Lambda      K        H        a         alpha
   0.313    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00000516

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family. Th...  121     5e-32


>CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family.  This family 
includes both bacterial phospholipase C enzymes EC:3.1.4.3, 
but also eukaryotic acid phosphatases EC:3.1.3.2.
Length=348

 Score = 121 bits (304),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 60/209 (29%), Positives = 92/209 (44%), Gaps = 34/209 (16%)

Query  2    DNDNFNQIPANVSTVADLLDTKNIAWGEYQEHLPYPGFQGFNYSNQETYVNDYVRKHNPL  61
            D +          T+ D L    I+WG YQE       Q FNY         YVRKHNPL
Sbjct  155  DPNTTPVKGFPWPTIPDRLSQAGISWGIYQEAFLDNHHQPFNY---------YVRKHNPL  205

Query  62   VLYDSVTKNSTRLRQIKNFTSFEDDLANKKLPQWAFITPNMTNDAHDT-NITFGAKWERS  120
              +               F+ F+ D+ N KLPQ +++ PN  ND H   +I  G KW ++
Sbjct  206  PSFRDALHQYGLAPH--YFSDFKKDVKNGKLPQVSWVIPNGANDEHPGHDIAAGQKWIKN  263

Query  121  WIAPLLNNSYFMNDTLILLTFDEDGTY------------------SKSNKIFSVLLGGAI  162
             +  LL++    N TL+++T+DE+G +                     N++ ++++    
Sbjct  264  VLEALLSSPQ-WNKTLLIVTYDENGGFYDHVPPPKAPVPGIPGPYGLGNRVPTLVIS---  319

Query  163  PDELKGTQDDTFYTHYSVIASVSANWGLP  191
            P    GT D T + H SV+  +   +GLP
Sbjct  320  PWAKPGTVDHTTFDHTSVLRFIEKRFGLP  348



Lambda      K        H        a         alpha
   0.313    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00000517

Length=572


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00006648

Length=924


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1190041106


Query= TCONS_00000518

Length=586


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0698    0.140     1.90     42.6     43.6 

Effective search space used: 738247432


Query= TCONS_00006650

Length=924


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1190041106


Query= TCONS_00006649

Length=924


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1190041106


Query= TCONS_00000519

Length=707


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905521060


Query= TCONS_00006651

Length=748


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 951669408


Query= TCONS_00000520

Length=748


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 951669408


Query= TCONS_00000521

Length=991


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1267209020


Query= TCONS_00000522

Length=1045


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1343666324


Query= TCONS_00006652

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00000530

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00006653

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00000525

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00000523

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00000528

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00000526

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00000529

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00006654

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00000527

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00000531

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395098 pfam00150, Cellulase, Cellulase (glycosyl hydrolase fa...  74.7    1e-15


>CDD:395098 pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5). 
 
Length=272

 Score = 74.7 bits (184),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 35/153 (23%), Positives = 58/153 (38%), Gaps = 17/153 (11%)

Query  92   WST--FITQDDFQQIAQAGMNHVRIPIGYWA--VSSLPDEPYVDGQLEYLDNAISWAREA  147
            W      T+     +   G N VR+P+  W   V + PD    +  L  +D  + +A + 
Sbjct  19   WGNPYVTTKAMIDLVKDWGFNVVRLPV-SWGGYVPNNPDYLIDENWLNRVDEVVDYAIDN  77

Query  148  GLKVVIDLHGAPGSQNGFDNSGRKGPIAWQQGDTVSQTVDAFRALAERYLPQSDVVTAIE  207
            G+ V+ID H   G           G          +     +  +A RY   +  V   E
Sbjct  78   GMYVIIDWHHDGGW---------PGDPNGNIDTAKAFFKKIWTQIATRY-GNNPNV-IFE  126

Query  208  ALNEPNIPGGVSEAG-LRDYYNQIADVVRQIDP  239
             +NEP+     + A  ++DY  +  D +R   P
Sbjct  127  LMNEPHGNDQATWADDVKDYAQEAIDAIRAAGP  159



Lambda      K        H        a         alpha
   0.317    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 507942834


Query= TCONS_00006655

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431935 pfam11563, Protoglobin, Protoglobin. This family inclu...  67.2    1e-15


>CDD:431935 pfam11563, Protoglobin, Protoglobin.  This family includes protoglobin 
from Methanosarcina acetivorans C2A. It is also found 
near the N-terminus of the Haem-based aerotactic transducer 
HemAT in Bacillus subtilis. It is part of the haemoglobin 
superfamily. Protoglobin has specific loops and an amino-terminal 
extension which leads to the burying of the haem within 
the matrix of the protein. Protoglobin-specific apolar tunnels 
allow the access of O2, CO and NO to the haem distal 
site. In HemAT it acts as an oxygen sensor domain.
Length=149

 Score = 67.2 bits (165),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 18/55 (33%), Positives = 25/55 (45%), Gaps = 0/55 (0%)

Query  10   PLNIEYIHIGVMLGFIQDVFTEALMSHPTLSLQRKVALVRAIGKIIWIQNDLFAK  64
             L +E          I +   EAL+    LS   K ALVRA+ K+I +  DL  +
Sbjct  95   RLGLEPRWYIAAYALILEGLLEALLEKIKLSAAEKSALVRALSKLINLDQDLVLE  149



Lambda      K        H        a         alpha
   0.316    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00000532

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431935 pfam11563, Protoglobin, Protoglobin. This family inclu...  172     6e-55


>CDD:431935 pfam11563, Protoglobin, Protoglobin.  This family includes protoglobin 
from Methanosarcina acetivorans C2A. It is also found 
near the N-terminus of the Haem-based aerotactic transducer 
HemAT in Bacillus subtilis. It is part of the haemoglobin 
superfamily. Protoglobin has specific loops and an amino-terminal 
extension which leads to the burying of the haem within 
the matrix of the protein. Protoglobin-specific apolar tunnels 
allow the access of O2, CO and NO to the haem distal 
site. In HemAT it acts as an oxygen sensor domain.
Length=149

 Score = 172 bits (439),  Expect = 6e-55, Method: Composition-based stats.
 Identities = 56/172 (33%), Positives = 75/172 (44%), Gaps = 23/172 (13%)

Query  33   EARITYLKDFLDFNSSDIEALTTGSKYIKALIPAVVNIVYKKLLEQDITARAFITRNTAD  92
            E+R+ Y   FL F   D+ AL      I+  IPA+V+  Y KLL    TAR F       
Sbjct  1    ESRLAYRLRFLGFTEEDLAALRALRPLIEPHIPAIVDAFYDKLLSFPETARIF-------  53

Query  93   ETTNVDDWYTEDSPQIKRRKMFLRWYLTKLCSDPTEMEFWRYLNKVGVMHSGQERRLPLN  152
                        S QI+R K  L+ YL +L S P +  +  Y  K+G MH        L 
Sbjct  54   ----------TTSSQIERLKDTLKAYLLRLFSGPYDEAYVEYRLKIGKMHV------RLG  97

Query  153  IEYIHIGVMLGFIQDVFTEALMSHPTLSLQRKVALVRAIGKIIWIQNDLFAK  204
            +E          I +   EAL+    LS   K ALVRA+ K+I +  DL  +
Sbjct  98   LEPRWYIAAYALILEGLLEALLEKIKLSAAEKSALVRALSKLINLDQDLVLE  149



Lambda      K        H        a         alpha
   0.318    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00006656

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00000533

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431935 pfam11563, Protoglobin, Protoglobin. This family inclu...  170     9e-55


>CDD:431935 pfam11563, Protoglobin, Protoglobin.  This family includes protoglobin 
from Methanosarcina acetivorans C2A. It is also found 
near the N-terminus of the Haem-based aerotactic transducer 
HemAT in Bacillus subtilis. It is part of the haemoglobin 
superfamily. Protoglobin has specific loops and an amino-terminal 
extension which leads to the burying of the haem within 
the matrix of the protein. Protoglobin-specific apolar tunnels 
allow the access of O2, CO and NO to the haem distal 
site. In HemAT it acts as an oxygen sensor domain.
Length=149

 Score = 170 bits (434),  Expect = 9e-55, Method: Composition-based stats.
 Identities = 56/172 (33%), Positives = 75/172 (44%), Gaps = 23/172 (13%)

Query  33   EARITYLKDFLDFNSSDIEALTTGSKYIKALIPAVVNIVYKKLLEQDITARAFITRNTAD  92
            E+R+ Y   FL F   D+ AL      I+  IPA+V+  Y KLL    TAR F       
Sbjct  1    ESRLAYRLRFLGFTEEDLAALRALRPLIEPHIPAIVDAFYDKLLSFPETARIF-------  53

Query  93   ETTNVDDWYTEDSPQIKRRKMFLRWYLTKLCSDPTEMEFWRYLNKVGVMHSGQERRLPLN  152
                        S QI+R K  L+ YL +L S P +  +  Y  K+G MH        L 
Sbjct  54   ----------TTSSQIERLKDTLKAYLLRLFSGPYDEAYVEYRLKIGKMHV------RLG  97

Query  153  IEYIHIGVMLGFIQDVFTEALMSHPTLSLQRKVALVRAIGKIIWIQNDLFAK  204
            +E          I +   EAL+    LS   K ALVRA+ K+I +  DL  +
Sbjct  98   LEPRWYIAAYALILEGLLEALLEKIKLSAAEKSALVRALSKLINLDQDLVLE  149



Lambda      K        H        a         alpha
   0.321    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00000534

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431935 pfam11563, Protoglobin, Protoglobin. This family inclu...  109     5e-32


>CDD:431935 pfam11563, Protoglobin, Protoglobin.  This family includes protoglobin 
from Methanosarcina acetivorans C2A. It is also found 
near the N-terminus of the Haem-based aerotactic transducer 
HemAT in Bacillus subtilis. It is part of the haemoglobin 
superfamily. Protoglobin has specific loops and an amino-terminal 
extension which leads to the burying of the haem within 
the matrix of the protein. Protoglobin-specific apolar tunnels 
allow the access of O2, CO and NO to the haem distal 
site. In HemAT it acts as an oxygen sensor domain.
Length=149

 Score = 109 bits (274),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 36/107 (34%), Positives = 48/107 (45%), Gaps = 17/107 (16%)

Query  33   EARITYLKDFLDFNSSDIEALTTGSKYIKALIPAVVNIVYKKLLEQDITARAFITRNTAD  92
            E+R+ Y   FL F   D+ AL      I+  IPA+V+  Y KLL    TAR F       
Sbjct  1    ESRLAYRLRFLGFTEEDLAALRALRPLIEPHIPAIVDAFYDKLLSFPETARIF-------  53

Query  93   ETTNVDDWYTEDSPQIKRRKMFLRWYLTKLCSDPTEMEFWRYLNKVG  139
                        S QI+R K  L+ YL +L S P +  +  Y  K+G
Sbjct  54   ----------TTSSQIERLKDTLKAYLLRLFSGPYDEAYVEYRLKIG  90



Lambda      K        H        a         alpha
   0.320    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0847    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00006657

Length=168
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431935 pfam11563, Protoglobin, Protoglobin. This family inclu...  104     1e-29


>CDD:431935 pfam11563, Protoglobin, Protoglobin.  This family includes protoglobin 
from Methanosarcina acetivorans C2A. It is also found 
near the N-terminus of the Haem-based aerotactic transducer 
HemAT in Bacillus subtilis. It is part of the haemoglobin 
superfamily. Protoglobin has specific loops and an amino-terminal 
extension which leads to the burying of the haem within 
the matrix of the protein. Protoglobin-specific apolar tunnels 
allow the access of O2, CO and NO to the haem distal 
site. In HemAT it acts as an oxygen sensor domain.
Length=149

 Score = 104 bits (261),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 46/105 (44%), Gaps = 17/105 (16%)

Query  33   EARITYLKDFLDFNSSDIEALTTGSKYIKALIPAVVNIVYKKLLEQDITARAFITRNTAD  92
            E+R+ Y   FL F   D+ AL      I+  IPA+V+  Y KLL    TAR F       
Sbjct  1    ESRLAYRLRFLGFTEEDLAALRALRPLIEPHIPAIVDAFYDKLLSFPETARIF-------  53

Query  93   ETTNVDDWYTEDSPQIKRRKMFLRWYLTKLCSDPTEMEFWRYLNK  137
                        S QI+R K  L+ YL +L S P +  +  Y  K
Sbjct  54   ----------TTSSQIERLKDTLKAYLLRLFSGPYDEAYVEYRLK  88



Lambda      K        H        a         alpha
   0.321    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00006658

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431935 pfam11563, Protoglobin, Protoglobin. This family inclu...  170     6e-55


>CDD:431935 pfam11563, Protoglobin, Protoglobin.  This family includes protoglobin 
from Methanosarcina acetivorans C2A. It is also found 
near the N-terminus of the Haem-based aerotactic transducer 
HemAT in Bacillus subtilis. It is part of the haemoglobin 
superfamily. Protoglobin has specific loops and an amino-terminal 
extension which leads to the burying of the haem within 
the matrix of the protein. Protoglobin-specific apolar tunnels 
allow the access of O2, CO and NO to the haem distal 
site. In HemAT it acts as an oxygen sensor domain.
Length=149

 Score = 170 bits (433),  Expect = 6e-55, Method: Composition-based stats.
 Identities = 56/172 (33%), Positives = 75/172 (44%), Gaps = 23/172 (13%)

Query  33   EARITYLKDFLDFNSSDIEALTTGSKYIKALIPAVVNIVYKKLLEQDITARAFITRNTAD  92
            E+R+ Y   FL F   D+ AL      I+  IPA+V+  Y KLL    TAR F       
Sbjct  1    ESRLAYRLRFLGFTEEDLAALRALRPLIEPHIPAIVDAFYDKLLSFPETARIF-------  53

Query  93   ETTNVDDWYTEDSPQIKRRKMFLRWYLTKLCSDPTEMEFWRYLNKVGVMHSGQERRLPLN  152
                        S QI+R K  L+ YL +L S P +  +  Y  K+G MH        L 
Sbjct  54   ----------TTSSQIERLKDTLKAYLLRLFSGPYDEAYVEYRLKIGKMHV------RLG  97

Query  153  IEYIHIGVMLGFIQDVFTEALMSHPTLSLQRKVALVRAIGKIIWIQNDLFAK  204
            +E          I +   EAL+    LS   K ALVRA+ K+I +  DL  +
Sbjct  98   LEPRWYIAAYALILEGLLEALLEKIKLSAAEKSALVRALSKLINLDQDLVLE  149



Lambda      K        H        a         alpha
   0.323    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00000535

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431935 pfam11563, Protoglobin, Protoglobin. This family inclu...  170     9e-55


>CDD:431935 pfam11563, Protoglobin, Protoglobin.  This family includes protoglobin 
from Methanosarcina acetivorans C2A. It is also found 
near the N-terminus of the Haem-based aerotactic transducer 
HemAT in Bacillus subtilis. It is part of the haemoglobin 
superfamily. Protoglobin has specific loops and an amino-terminal 
extension which leads to the burying of the haem within 
the matrix of the protein. Protoglobin-specific apolar tunnels 
allow the access of O2, CO and NO to the haem distal 
site. In HemAT it acts as an oxygen sensor domain.
Length=149

 Score = 170 bits (434),  Expect = 9e-55, Method: Composition-based stats.
 Identities = 56/172 (33%), Positives = 75/172 (44%), Gaps = 23/172 (13%)

Query  33   EARITYLKDFLDFNSSDIEALTTGSKYIKALIPAVVNIVYKKLLEQDITARAFITRNTAD  92
            E+R+ Y   FL F   D+ AL      I+  IPA+V+  Y KLL    TAR F       
Sbjct  1    ESRLAYRLRFLGFTEEDLAALRALRPLIEPHIPAIVDAFYDKLLSFPETARIF-------  53

Query  93   ETTNVDDWYTEDSPQIKRRKMFLRWYLTKLCSDPTEMEFWRYLNKVGVMHSGQERRLPLN  152
                        S QI+R K  L+ YL +L S P +  +  Y  K+G MH        L 
Sbjct  54   ----------TTSSQIERLKDTLKAYLLRLFSGPYDEAYVEYRLKIGKMHV------RLG  97

Query  153  IEYIHIGVMLGFIQDVFTEALMSHPTLSLQRKVALVRAIGKIIWIQNDLFAK  204
            +E          I +   EAL+    LS   K ALVRA+ K+I +  DL  +
Sbjct  98   LEPRWYIAAYALILEGLLEALLEKIKLSAAEKSALVRALSKLINLDQDLVLE  149



Lambda      K        H        a         alpha
   0.321    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00006659

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00006660

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00000536

Length=143
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  137     4e-40


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 137 bits (348),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 59/148 (40%), Positives = 88/148 (59%), Gaps = 6/148 (4%)

Query  1    MSTERIVVQRAIADKFRQLLAENAEKL-FGKA-APAPV---LVTSAAVKKNKTLVADALS  55
             +T R++V  +I D+F + L E A+KL  G    P      L++ A +++    V DA  
Sbjct  270  TATSRLLVHESIYDEFVEKLVEAAKKLKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKE  329

Query  56   KGASVLFGDANATESSDHSLRPVIVDNVTKDMDLYSTESFGPTVSLIVVDTEEDAIALAN  115
            +GA +L G   A   + + + P ++ NVT DM +   E FGP +S+I    EE+AI +AN
Sbjct  330  EGAKLLTGG-EAGLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIAN  388

Query  116  DTEYGLTSAVFTDNLFRGLRVAKQIEAG  143
            DTEYGL + VFT +L R LRVA+++EAG
Sbjct  389  DTEYGLAAGVFTSDLERALRVARRLEAG  416



Lambda      K        H        a         alpha
   0.314    0.128    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00006661

Length=143
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  137     4e-40


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 137 bits (348),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 59/148 (40%), Positives = 88/148 (59%), Gaps = 6/148 (4%)

Query  1    MSTERIVVQRAIADKFRQLLAENAEKL-FGKA-APAPV---LVTSAAVKKNKTLVADALS  55
             +T R++V  +I D+F + L E A+KL  G    P      L++ A +++    V DA  
Sbjct  270  TATSRLLVHESIYDEFVEKLVEAAKKLKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKE  329

Query  56   KGASVLFGDANATESSDHSLRPVIVDNVTKDMDLYSTESFGPTVSLIVVDTEEDAIALAN  115
            +GA +L G   A   + + + P ++ NVT DM +   E FGP +S+I    EE+AI +AN
Sbjct  330  EGAKLLTGG-EAGLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIAN  388

Query  116  DTEYGLTSAVFTDNLFRGLRVAKQIEAG  143
            DTEYGL + VFT +L R LRVA+++EAG
Sbjct  389  DTEYGLAAGVFTSDLERALRVARRLEAG  416



Lambda      K        H        a         alpha
   0.314    0.128    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00000537

Length=143
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  137     4e-40


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 137 bits (348),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 59/148 (40%), Positives = 88/148 (59%), Gaps = 6/148 (4%)

Query  1    MSTERIVVQRAIADKFRQLLAENAEKL-FGKA-APAPV---LVTSAAVKKNKTLVADALS  55
             +T R++V  +I D+F + L E A+KL  G    P      L++ A +++    V DA  
Sbjct  270  TATSRLLVHESIYDEFVEKLVEAAKKLKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKE  329

Query  56   KGASVLFGDANATESSDHSLRPVIVDNVTKDMDLYSTESFGPTVSLIVVDTEEDAIALAN  115
            +GA +L G   A   + + + P ++ NVT DM +   E FGP +S+I    EE+AI +AN
Sbjct  330  EGAKLLTGG-EAGLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIAN  388

Query  116  DTEYGLTSAVFTDNLFRGLRVAKQIEAG  143
            DTEYGL + VFT +L R LRVA+++EAG
Sbjct  389  DTEYGLAAGVFTSDLERALRVARRLEAG  416



Lambda      K        H        a         alpha
   0.314    0.128    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00000538

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  180     1e-55


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 180 bits (460),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 81/196 (41%), Positives = 117/196 (60%), Gaps = 7/196 (4%)

Query  2    HSGQICMSTERIVVQRAIADKFRQLLAENAEKL-FGKA-APAPV---LVTSAAVKKNKTL  56
            ++GQ+C +T R++V  +I D+F + L E A+KL  G    P      L++ A +++    
Sbjct  264  NAGQVCTATSRLLVHESIYDEFVEKLVEAAKKLKVGDPLDPDTDMGPLISKAQLERVLKY  323

Query  57   VADALSKGASVLFGDANATESSDHSLRPVIVDNVTKDMDLYSTESFGPTVSLIVVDTEED  116
            V DA  +GA +L G   A   + + + P ++ NVT DM +   E FGP +S+I    EE+
Sbjct  324  VEDAKEEGAKLLTGG-EAGLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIRFKDEEE  382

Query  117  AIALANDTEYGLTSAVFTDNLFRGLRVAKQIEAGAVHINSLTVHDEPTLPHGGWKSSGFG  176
            AI +ANDTEYGL + VFT +L R LRVA+++EAG V IN  T  D   LP GG+K SGFG
Sbjct  383  AIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFGGFKQSGFG  442

Query  177  RFGGGTAAFDEWLQTK  192
            R GG     +E+ + K
Sbjct  443  REGGP-YGLEEYTEVK  457



Lambda      K        H        a         alpha
   0.315    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00000539

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  238     2e-76


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 238 bits (611),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 108/260 (42%), Positives = 145/260 (56%), Gaps = 4/260 (2%)

Query  28   FDIHAPATGQVLHQCAAASVDHANRAVAAAKAAFPAWSRMKPYDRRDVLMKAADIMFARS  87
             ++  PATG+V+    AA+ +  + A+AAA+AAFPAW +    +R  +L KAAD++  R 
Sbjct  9    IEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRKAADLLEERK  68

Query  88   EELIKYQMEETGAGRMFAEKTCLLGAGFLKDFAARIPSIEGSVPSVTQDGECAMVFKEPY  147
            +EL + +  E G     A          L+ +A     ++G        G  A   +EP 
Sbjct  69   DELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSD-PGRLAYTRREPL  127

Query  148  GVVLGIAPWNAPFILGVRAVALPLAAGNTAILKGSELAPKCFWAIGDIFREAGLPAGCLN  207
            GVV  I PWN P +L    +A  LAAGNT +LK SEL P     + ++F EAGLPAG LN
Sbjct  128  GVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLN  187

Query  208  VLYHRTADAAEVTTALIAHPAVRKVNFTGSTQVGSIIAATAGKYTKPVLLELGGKASAIV  267
            V+   T   AEV  AL+ HP VRKV+FTGST VG  IA  A +  K V LELGGK   IV
Sbjct  188  VV---TGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIV  244

Query  268  LDDANLEKAAFCCALGSFMH  287
            L+DA+L+ A      G+F +
Sbjct  245  LEDADLDAAVEAAVFGAFGN  264



Lambda      K        H        a         alpha
   0.321    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00006662

Length=143
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  137     4e-40


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 137 bits (348),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 59/148 (40%), Positives = 88/148 (59%), Gaps = 6/148 (4%)

Query  1    MSTERIVVQRAIADKFRQLLAENAEKL-FGKA-APAPV---LVTSAAVKKNKTLVADALS  55
             +T R++V  +I D+F + L E A+KL  G    P      L++ A +++    V DA  
Sbjct  270  TATSRLLVHESIYDEFVEKLVEAAKKLKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKE  329

Query  56   KGASVLFGDANATESSDHSLRPVIVDNVTKDMDLYSTESFGPTVSLIVVDTEEDAIALAN  115
            +GA +L G   A   + + + P ++ NVT DM +   E FGP +S+I    EE+AI +AN
Sbjct  330  EGAKLLTGG-EAGLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIAN  388

Query  116  DTEYGLTSAVFTDNLFRGLRVAKQIEAG  143
            DTEYGL + VFT +L R LRVA+++EAG
Sbjct  389  DTEYGLAAGVFTSDLERALRVARRLEAG  416



Lambda      K        H        a         alpha
   0.314    0.128    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00000540

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  153     6e-46


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 153 bits (389),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 94/154 (61%), Gaps = 6/154 (4%)

Query  2    HSGQICMSTERIVVQRAIADKFRQLLAENAEKL-FGKA-APAPV---LVTSAAVKKNKTL  56
            ++GQ+C +T R++V  +I D+F + L E A+KL  G    P      L++ A +++    
Sbjct  264  NAGQVCTATSRLLVHESIYDEFVEKLVEAAKKLKVGDPLDPDTDMGPLISKAQLERVLKY  323

Query  57   VADALSKGASVLFGDANATESSDHSLRPVIVDNVTKDMDLYSTESFGPTVSLIVVDTEED  116
            V DA  +GA +L G   A   + + + P ++ NVT DM +   E FGP +S+I    EE+
Sbjct  324  VEDAKEEGAKLLTGG-EAGLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIRFKDEEE  382

Query  117  AIALANDTEYGLTSAVFTDNLFRGLRVAKQIEAG  150
            AI +ANDTEYGL + VFT +L R LRVA+++EAG
Sbjct  383  AIEIANDTEYGLAAGVFTSDLERALRVARRLEAG  416



Lambda      K        H        a         alpha
   0.315    0.129    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00006663

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  169     2e-51


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 169 bits (430),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 80/192 (42%), Positives = 113/192 (59%), Gaps = 7/192 (4%)

Query  1    MSTERIVVQRAIADKFRQLLAENAEKL-FGKA-APAPV---LVTSAAVKKNKTLVADALS  55
             +T R++V  +I D+F + L E A+KL  G    P      L++ A +++    V DA  
Sbjct  270  TATSRLLVHESIYDEFVEKLVEAAKKLKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKE  329

Query  56   KGASVLFGDANATESSDHSLRPVIVDNVTKDMDLYSTESFGPTVSLIVVDTEEDAIALAN  115
            +GA +L G   A   + + + P ++ NVT DM +   E FGP +S+I    EE+AI +AN
Sbjct  330  EGAKLLTGG-EAGLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIAN  388

Query  116  DTEYGLTSAVFTDNLFRGLRVAKQIEAGAVHINSLTVHDEPTLPHGGWKSSGFGRFGGGT  175
            DTEYGL + VFT +L R LRVA+++EAG V IN  T  D   LP GG+K SGFGR GG  
Sbjct  389  DTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFGGFKQSGFGREGGP-  447

Query  176  AAFDEWLQTKTV  187
               +E+ + KTV
Sbjct  448  YGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.314    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00000541

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  416     3e-143


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 416 bits (1072),  Expect = 3e-143, Method: Composition-based stats.
 Identities = 191/457 (42%), Positives = 263/457 (58%), Gaps = 11/457 (2%)

Query  28   FDIHAPATGQVLHQCAAASVDHANRAVAAAKAAFPAWSRMKPYDRRDVLMKAADIMFARS  87
             ++  PATG+V+    AA+ +  + A+AAA+AAFPAW +    +R  +L KAAD++  R 
Sbjct  9    IEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRKAADLLEERK  68

Query  88   EELIKYQMEETGAGRMFAEKTCLLGAGFLKDFAARIPSIEGSVPSVTQDGECAMVFKEPY  147
            +EL + +  E G     A          L+ +A     ++G        G  A   +EP 
Sbjct  69   DELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSD-PGRLAYTRREPL  127

Query  148  GVVLGIAPWNAPFILGVRAVALPLAAGNTAILKGSELAPKCFWAIGDIFREAGLPAGCLN  207
            GVV  I PWN P +L    +A  LAAGNT +LK SEL P     + ++F EAGLPAG LN
Sbjct  128  GVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLN  187

Query  208  VLYHRTADAAEVTTALIAHPAVRKVNFTGSTQVGSIIAATAGKYTKPVLLELGGKASAIV  267
            V+   T   AEV  AL+ HP VRKV+FTGST VG  IA  A +  K V LELGGK   IV
Sbjct  188  VV---TGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIV  244

Query  268  LDDANLEKAAFCCALGSFMHSGQICMSTERIVVQRAIADKFRQLLAENAEKL-FGKA-AP  325
            L+DA+L+ A      G+F ++GQ+C +T R++V  +I D+F + L E A+KL  G    P
Sbjct  245  LEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKLKVGDPLDP  304

Query  326  APV---LVTSAAVKKNKTLVADALSKGASVLFGDANATESSDHSLRPVIVDNVTKDMDLY  382
                  L++ A +++    V DA  +GA +L G   A   + + + P ++ NVT DM + 
Sbjct  305  DTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGG-EAGLDNGYFVEPTVLANVTPDMRIA  363

Query  383  STESFGPTVSLIVVDTEEDAIALANDTEYGLTSAVFTDNLFRGLRVAKQIEAGAVHINSL  442
              E FGP +S+I    EE+AI +ANDTEYGL + VFT +L R LRVA+++EAG V IN  
Sbjct  364  QEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDY  423

Query  443  TVHDEPTLPHGGWKSSGFGRFGGGTAAFDEWLQTKTV  479
            T  D   LP GG+K SGFGR GG     +E+ + KTV
Sbjct  424  TTGDADGLPFGGFKQSGFGREGGP-YGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.319    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593513872


Query= TCONS_00000543

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  371     3e-127


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 371 bits (955),  Expect = 3e-127, Method: Composition-based stats.
 Identities = 153/374 (41%), Positives = 211/374 (56%), Gaps = 10/374 (3%)

Query  1    MKPYDRRDVLMKAADIMFARSEELIKYQMEETGAGRMFAEKTCLLGAGFLKDFAARIPSI  60
                +R  +L KAAD++  R +EL + +  E G     A          L+ +A     +
Sbjct  48   TPAAERAAILRKAADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRL  107

Query  61   EGSVPSVTQDGECAMVFKEPYGVVLGIAPWNAPFILGVRAVALPLAAGNTAILKGSELAP  120
            +G        G  A   +EP GVV  I PWN P +L    +A  LAAGNT +LK SEL P
Sbjct  108  DGETLPSD-PGRLAYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTP  166

Query  121  KCFWAIGDIFREAGLPAGCLNVLYHRTADAAEVTTALIAHPAVRKVNFTGSTQVGSIIAA  180
                 + ++F EAGLPAG LNV+   T   AEV  AL+ HP VRKV+FTGST VG  IA 
Sbjct  167  LTALLLAELFEEAGLPAGVLNVV---TGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAE  223

Query  181  TAGKYTKPVLLELGGKASAIVLDDANLEKAAFCCALGSFMHSGQICMSTERIVVQRAIAD  240
             A +  K V LELGGK   IVL+DA+L+ A      G+F ++GQ+C +T R++V  +I D
Sbjct  224  AAAQNLKRVTLELGGKNPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYD  283

Query  241  KFRQLLAENAEKL-FGKA-APAPV---LVTSAAVKKNKTLVADALSKGASVLFGDANATE  295
            +F + L E A+KL  G    P      L++ A +++    V DA  +GA +L G   A  
Sbjct  284  EFVEKLVEAAKKLKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGG-EAGL  342

Query  296  SSDHSLRPVIVDNVTKDMDLYSTESFGPTVSLIVVDTEEDAIALANDTEYGLTSAVFTDN  355
             + + + P ++ NVT DM +   E FGP +S+I    EE+AI +ANDTEYGL + VFT +
Sbjct  343  DNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSD  402

Query  356  LFRGLRVAKQIEAG  369
            L R LRVA+++EAG
Sbjct  403  LERALRVARRLEAG  416



Lambda      K        H        a         alpha
   0.319    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00000542

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  224     5e-72


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 224 bits (574),  Expect = 5e-72, Method: Composition-based stats.
 Identities = 91/221 (41%), Positives = 118/221 (53%), Gaps = 4/221 (2%)

Query  1    MKPYDRRDVLMKAADIMFARSEELIKYQMEETGAGRMFAEKTCLLGAGFLKDFAARIPSI  60
                +R  +L KAAD++  R +EL + +  E G     A          L+ +A     +
Sbjct  48   TPAAERAAILRKAADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRL  107

Query  61   EGSVPSVTQDGECAMVFKEPYGVVLGIAPWNAPFILGVRAVALPLAAGNTAILKGSELAP  120
            +G        G  A   +EP GVV  I PWN P +L    +A  LAAGNT +LK SEL P
Sbjct  108  DGETLPSD-PGRLAYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTP  166

Query  121  KCFWAIGDIFREAGLPAGCLNVLYHRTADAAEVTTALIAHPAVRKVNFTGSTQVGSIIAA  180
                 + ++F EAGLPAG LNV+   T   AEV  AL+ HP VRKV+FTGST VG  IA 
Sbjct  167  LTALLLAELFEEAGLPAGVLNVV---TGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAE  223

Query  181  TAGKYTKPVLLELGGKASAIVLDDANLEKAAFCCALGSFMH  221
             A +  K V LELGGK   IVL+DA+L+ A      G+F +
Sbjct  224  AAAQNLKRVTLELGGKNPLIVLEDADLDAAVEAAVFGAFGN  264



Lambda      K        H        a         alpha
   0.322    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00000544

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phospha...  81.2    2e-20


>CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored 
membrane family.  Some members of this family 
appear to be serine- threonine-rich membrane-anchored proteins, 
anchored by glycosyl-phosphatidylinositol. In A. fumigatus 
these proteins play a role in fungal cell wall organisation. 
In Lentinula edodes this family is involved in fruiting 
body formation, and may have a more general role in signalling 
in other organisms as it interacts with MAPK. The family 
is also found in archaea and bacteria.
Length=94

 Score = 81.2 bits (201),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 51/95 (54%), Gaps = 7/95 (7%)

Query  34   KPGLNEQVPVGKPYTITW--DPTTEGPVSLVLLRGPSTNVVPLSTIVESIPN-TGSYSWT  90
             P   + V  G P+TITW   PT  G V+L L  GPS N  P++T+   I N  GSY+WT
Sbjct  1    SPSSGDVVDAGSPFTITWSDVPTDPGTVTLYLCNGPSNNPPPVATLASGIDNSGGSYTWT  60

Query  91   PSTDLENDVTHYGLLLVVEG---TGQYQWSTQFGI  122
            P TDL      Y + +V E    TG Y +S +F I
Sbjct  61   PPTDLPAGSG-YQIQIVSETNANTGIYNYSPRFTI  94



Lambda      K        H        a         alpha
   0.308    0.124    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00000545

Length=112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462817 pfam09495, DUF2462, Protein of unknown function (DUF24...  63.8    2e-15


>CDD:462817 pfam09495, DUF2462, Protein of unknown function (DUF2462).  This 
protein is highly conserved, but its function is unknown. 
It can be isolated from HeLa cell nucleoli and is found to 
be homologous with Leydig cell tumor protein whose function 
is unknown.
Length=77

 Score = 63.8 bits (156),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 40/73 (55%), Positives = 47/73 (64%), Gaps = 6/73 (8%)

Query  45   MAQGPLKKTKPSTAKRPT---ALAPKRGPRQIAPKKATLIKQQKITK-LTAGLTAKTERT  100
            MAQG LKK K +   +     A  PK+G R IAPKKA L+KQQK+ K LT G+  KTE+ 
Sbjct  1    MAQGKLKKKKKAKKAKRASKKAANPKKGARVIAPKKAKLVKQQKLKKKLTKGINKKTEKE  60

Query  101  LAQRAG--HLELL  111
            LA RAG   LELL
Sbjct  61   LASRAGSGKLELL  73



Lambda      K        H        a         alpha
   0.316    0.125    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00006664

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00000548

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phospha...  81.2    2e-20


>CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored 
membrane family.  Some members of this family 
appear to be serine- threonine-rich membrane-anchored proteins, 
anchored by glycosyl-phosphatidylinositol. In A. fumigatus 
these proteins play a role in fungal cell wall organisation. 
In Lentinula edodes this family is involved in fruiting 
body formation, and may have a more general role in signalling 
in other organisms as it interacts with MAPK. The family 
is also found in archaea and bacteria.
Length=94

 Score = 81.2 bits (201),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 51/95 (54%), Gaps = 7/95 (7%)

Query  34   KPGLNEQVPVGKPYTITW--DPTTEGPVSLVLLRGPSTNVVPLSTIVESIPN-TGSYSWT  90
             P   + V  G P+TITW   PT  G V+L L  GPS N  P++T+   I N  GSY+WT
Sbjct  1    SPSSGDVVDAGSPFTITWSDVPTDPGTVTLYLCNGPSNNPPPVATLASGIDNSGGSYTWT  60

Query  91   PSTDLENDVTHYGLLLVVEG---TGQYQWSTQFGI  122
            P TDL      Y + +V E    TG Y +S +F I
Sbjct  61   PPTDLPAGSG-YQIQIVSETNANTGIYNYSPRFTI  94



Lambda      K        H        a         alpha
   0.308    0.124    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00000546

Length=121
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462817 pfam09495, DUF2462, Protein of unknown function (DUF24...  65.4    5e-16


>CDD:462817 pfam09495, DUF2462, Protein of unknown function (DUF2462).  This 
protein is highly conserved, but its function is unknown. 
It can be isolated from HeLa cell nucleoli and is found to 
be homologous with Leydig cell tumor protein whose function 
is unknown.
Length=77

 Score = 65.4 bits (160),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 44/77 (57%), Positives = 51/77 (66%), Gaps = 5/77 (6%)

Query  45   MAQGPLKKTKPSTAKRPT---ALAPKRGPRQIAPKKATLIKQQKITKKLTAGLTAKTERT  101
            MAQG LKK K +   +     A  PK+G R IAPKKA L+KQQK+ KKLT G+  KTE+ 
Sbjct  1    MAQGKLKKKKKAKKAKRASKKAANPKKGARVIAPKKAKLVKQQKLKKKLTKGINKKTEKE  60

Query  102  LAQRAG--HLELLAGGK  116
            LA RAG   LELL GGK
Sbjct  61   LASRAGSGKLELLKGGK  77



Lambda      K        H        a         alpha
   0.314    0.125    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00000547

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00006665

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00000549

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00000550

Length=70
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462817 pfam09495, DUF2462, Protein of unknown function (DUF24...  56.5    3e-13


>CDD:462817 pfam09495, DUF2462, Protein of unknown function (DUF2462).  This 
protein is highly conserved, but its function is unknown. 
It can be isolated from HeLa cell nucleoli and is found to 
be homologous with Leydig cell tumor protein whose function 
is unknown.
Length=77

 Score = 56.5 bits (137),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 41/75 (55%), Positives = 49/75 (65%), Gaps = 5/75 (7%)

Query  1   MAQGPLKKTKPSTAKRPT---ALAPKRGPRQIAPKKATLIKQQKITKELTAGLTAKTERT  57
           MAQG LKK K +   +     A  PK+G R IAPKKA L+KQQK+ K+LT G+  KTE+ 
Sbjct  1   MAQGKLKKKKKAKKAKRASKKAANPKKGARVIAPKKAKLVKQQKLKKKLTKGINKKTEKE  60

Query  58  LAQRAG--HLELLAG  70
           LA RAG   LELL G
Sbjct  61  LASRAGSGKLELLKG  75



Lambda      K        H        a         alpha
   0.311    0.125    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00006666

Length=78
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462817 pfam09495, DUF2462, Protein of unknown function (DUF24...  51.9    3e-11


>CDD:462817 pfam09495, DUF2462, Protein of unknown function (DUF2462).  This 
protein is highly conserved, but its function is unknown. 
It can be isolated from HeLa cell nucleoli and is found to 
be homologous with Leydig cell tumor protein whose function 
is unknown.
Length=77

 Score = 51.9 bits (125),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 43/77 (56%), Positives = 50/77 (65%), Gaps = 5/77 (6%)

Query  1   MAQGPLKKTKPSTAKRPT---ALAPKRGPRQIAPKKATLIKQQKITKVLTAGLTAKTERT  57
           MAQG LKK K +   +     A  PK+G R IAPKKA L+KQQK+ K LT G+  KTE+ 
Sbjct  1   MAQGKLKKKKKAKKAKRASKKAANPKKGARVIAPKKAKLVKQQKLKKKLTKGINKKTEKE  60

Query  58  LAQRAG--HLELLAGGK  72
           LA RAG   LELL GGK
Sbjct  61  LASRAGSGKLELLKGGK  77



Lambda      K        H        a         alpha
   0.309    0.125    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00006667

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460400 pfam01975, SurE, Survival protein SurE. E. coli cells ...  189     3e-60


>CDD:460400 pfam01975, SurE, Survival protein SurE.  E. coli cells with the 
surE gene disrupted are found to survive poorly in stationary 
phase. It is suggested that SurE may be involved in stress 
response. Yeast also contains a member of the family. Yarrowia 
lipolytica PHO2 can complement a mutation in acid phosphatase, 
suggesting that members of this family could be phosphatases.
Length=187

 Score = 189 bits (484),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 77/215 (36%), Positives = 101/215 (47%), Gaps = 30/215 (14%)

Query  3    ILVVNDDGPPSRRLSPYIRPFVDALQAAGHQVSVAIPARSRSWIGKAHIIEAALEATYVP  62
            IL+ NDDG  +    P IR  V+AL AA H V+V  P   RS +G +  +   L AT V 
Sbjct  1    ILLTNDDGIDA----PGIRALVEALAAA-HDVTVVAPDSERSGVGHSITLHEPLRATEV-  54

Query  63   PDAFQEDGTWDEAYETPDEDESKLEWVVITNGTPASCTQLGLFNLFADRGPIDLVISGPN  122
                              E +    + V  +GTPA C +L L  L   +   DLV+SG N
Sbjct  55   -----------------VEIDGAEAYAV--SGTPADCVKLALSGLLLRKP--DLVVSGIN  93

Query  123  HGRNASTIYNLSSGTVGGALEAAICGKRGIAISFGSKDEQPIEVIRAAARLAVRVVNHLY  182
            HG N  T   L SGTVG A+EAA+ G   IA+S  S  +   E   AAAR A R+V  L 
Sbjct  94   HGANLGTDV-LYSGTVGAAMEAALLGIPSIAVSLASFSDD--EDFEAAARFAARLVEKLI  150

Query  183  QNWDERVELYNLNVPMRADVETRPVLYTRTLPYYW  217
            +      +L N+NVP     E + +  TR     +
Sbjct  151  EALLPGGDLLNVNVPDVPAEEIKGIKVTRQGRRRY  185



Lambda      K        H        a         alpha
   0.316    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00000551

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460400 pfam01975, SurE, Survival protein SurE. E. coli cells ...  189     3e-60


>CDD:460400 pfam01975, SurE, Survival protein SurE.  E. coli cells with the 
surE gene disrupted are found to survive poorly in stationary 
phase. It is suggested that SurE may be involved in stress 
response. Yeast also contains a member of the family. Yarrowia 
lipolytica PHO2 can complement a mutation in acid phosphatase, 
suggesting that members of this family could be phosphatases.
Length=187

 Score = 189 bits (484),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 77/215 (36%), Positives = 101/215 (47%), Gaps = 30/215 (14%)

Query  3    ILVVNDDGPPSRRLSPYIRPFVDALQAAGHQVSVAIPARSRSWIGKAHIIEAALEATYVP  62
            IL+ NDDG  +    P IR  V+AL AA H V+V  P   RS +G +  +   L AT V 
Sbjct  1    ILLTNDDGIDA----PGIRALVEALAAA-HDVTVVAPDSERSGVGHSITLHEPLRATEV-  54

Query  63   PDAFQEDGTWDEAYETPDEDESKLEWVVITNGTPASCTQLGLFNLFADRGPIDLVISGPN  122
                              E +    + V  +GTPA C +L L  L   +   DLV+SG N
Sbjct  55   -----------------VEIDGAEAYAV--SGTPADCVKLALSGLLLRKP--DLVVSGIN  93

Query  123  HGRNASTIYNLSSGTVGGALEAAICGKRGIAISFGSKDEQPIEVIRAAARLAVRVVNHLY  182
            HG N  T   L SGTVG A+EAA+ G   IA+S  S  +   E   AAAR A R+V  L 
Sbjct  94   HGANLGTDV-LYSGTVGAAMEAALLGIPSIAVSLASFSDD--EDFEAAARFAARLVEKLI  150

Query  183  QNWDERVELYNLNVPMRADVETRPVLYTRTLPYYW  217
            +      +L N+NVP     E + +  TR     +
Sbjct  151  EALLPGGDLLNVNVPDVPAEEIKGIKVTRQGRRRY  185



Lambda      K        H        a         alpha
   0.316    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00000553

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460400 pfam01975, SurE, Survival protein SurE. E. coli cells ...  189     3e-60


>CDD:460400 pfam01975, SurE, Survival protein SurE.  E. coli cells with the 
surE gene disrupted are found to survive poorly in stationary 
phase. It is suggested that SurE may be involved in stress 
response. Yeast also contains a member of the family. Yarrowia 
lipolytica PHO2 can complement a mutation in acid phosphatase, 
suggesting that members of this family could be phosphatases.
Length=187

 Score = 189 bits (484),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 77/215 (36%), Positives = 101/215 (47%), Gaps = 30/215 (14%)

Query  3    ILVVNDDGPPSRRLSPYIRPFVDALQAAGHQVSVAIPARSRSWIGKAHIIEAALEATYVP  62
            IL+ NDDG  +    P IR  V+AL AA H V+V  P   RS +G +  +   L AT V 
Sbjct  1    ILLTNDDGIDA----PGIRALVEALAAA-HDVTVVAPDSERSGVGHSITLHEPLRATEV-  54

Query  63   PDAFQEDGTWDEAYETPDEDESKLEWVVITNGTPASCTQLGLFNLFADRGPIDLVISGPN  122
                              E +    + V  +GTPA C +L L  L   +   DLV+SG N
Sbjct  55   -----------------VEIDGAEAYAV--SGTPADCVKLALSGLLLRKP--DLVVSGIN  93

Query  123  HGRNASTIYNLSSGTVGGALEAAICGKRGIAISFGSKDEQPIEVIRAAARLAVRVVNHLY  182
            HG N  T   L SGTVG A+EAA+ G   IA+S  S  +   E   AAAR A R+V  L 
Sbjct  94   HGANLGTDV-LYSGTVGAAMEAALLGIPSIAVSLASFSDD--EDFEAAARFAARLVEKLI  150

Query  183  QNWDERVELYNLNVPMRADVETRPVLYTRTLPYYW  217
            +      +L N+NVP     E + +  TR     +
Sbjct  151  EALLPGGDLLNVNVPDVPAEEIKGIKVTRQGRRRY  185



Lambda      K        H        a         alpha
   0.316    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00000552

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460400 pfam01975, SurE, Survival protein SurE. E. coli cells ...  189     3e-60


>CDD:460400 pfam01975, SurE, Survival protein SurE.  E. coli cells with the 
surE gene disrupted are found to survive poorly in stationary 
phase. It is suggested that SurE may be involved in stress 
response. Yeast also contains a member of the family. Yarrowia 
lipolytica PHO2 can complement a mutation in acid phosphatase, 
suggesting that members of this family could be phosphatases.
Length=187

 Score = 189 bits (484),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 77/215 (36%), Positives = 101/215 (47%), Gaps = 30/215 (14%)

Query  3    ILVVNDDGPPSRRLSPYIRPFVDALQAAGHQVSVAIPARSRSWIGKAHIIEAALEATYVP  62
            IL+ NDDG  +    P IR  V+AL AA H V+V  P   RS +G +  +   L AT V 
Sbjct  1    ILLTNDDGIDA----PGIRALVEALAAA-HDVTVVAPDSERSGVGHSITLHEPLRATEV-  54

Query  63   PDAFQEDGTWDEAYETPDEDESKLEWVVITNGTPASCTQLGLFNLFADRGPIDLVISGPN  122
                              E +    + V  +GTPA C +L L  L   +   DLV+SG N
Sbjct  55   -----------------VEIDGAEAYAV--SGTPADCVKLALSGLLLRKP--DLVVSGIN  93

Query  123  HGRNASTIYNLSSGTVGGALEAAICGKRGIAISFGSKDEQPIEVIRAAARLAVRVVNHLY  182
            HG N  T   L SGTVG A+EAA+ G   IA+S  S  +   E   AAAR A R+V  L 
Sbjct  94   HGANLGTDV-LYSGTVGAAMEAALLGIPSIAVSLASFSDD--EDFEAAARFAARLVEKLI  150

Query  183  QNWDERVELYNLNVPMRADVETRPVLYTRTLPYYW  217
            +      +L N+NVP     E + +  TR     +
Sbjct  151  EALLPGGDLLNVNVPDVPAEEIKGIKVTRQGRRRY  185



Lambda      K        H        a         alpha
   0.316    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00000554

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460400 pfam01975, SurE, Survival protein SurE. E. coli cells ...  184     8e-58


>CDD:460400 pfam01975, SurE, Survival protein SurE.  E. coli cells with the 
surE gene disrupted are found to survive poorly in stationary 
phase. It is suggested that SurE may be involved in stress 
response. Yeast also contains a member of the family. Yarrowia 
lipolytica PHO2 can complement a mutation in acid phosphatase, 
suggesting that members of this family could be phosphatases.
Length=187

 Score = 184 bits (469),  Expect = 8e-58, Method: Composition-based stats.
 Identities = 75/213 (35%), Positives = 99/213 (46%), Gaps = 30/213 (14%)

Query  43   VVNDDGPPSRRLSPYIRPFVDALQAAGHQVSVAIPARSRSWIGKAHIIEAALEATYVPPD  102
            + NDDG  +    P IR  V+AL AA H V+V  P   RS +G +  +   L AT V   
Sbjct  3    LTNDDGIDA----PGIRALVEALAAA-HDVTVVAPDSERSGVGHSITLHEPLRATEV---  54

Query  103  AFQEDGTWDEAYETPDEDESKLEWVVITNGTPASCTQLGLFNLFADRGPIDLVISGPNHG  162
                            E +    + V  +GTPA C +L L  L   +   DLV+SG NHG
Sbjct  55   ---------------VEIDGAEAYAV--SGTPADCVKLALSGLLLRKP--DLVVSGINHG  95

Query  163  RNASTIYNLSSGTVGGALEAAICGKRGIAISFGSKDEQPIEVIRAAARLAVRVVNHLYQN  222
             N  T   L SGTVG A+EAA+ G   IA+S  S  +   E   AAAR A R+V  L + 
Sbjct  96   ANLGTDV-LYSGTVGAAMEAALLGIPSIAVSLASFSDD--EDFEAAARFAARLVEKLIEA  152

Query  223  WDERVELYNLNVPMRADVETRPVLYTRTLPYYW  255
                 +L N+NVP     E + +  TR     +
Sbjct  153  LLPGGDLLNVNVPDVPAEEIKGIKVTRQGRRRY  185



Lambda      K        H        a         alpha
   0.315    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00006668

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460400 pfam01975, SurE, Survival protein SurE. E. coli cells ...  188     8e-60


>CDD:460400 pfam01975, SurE, Survival protein SurE.  E. coli cells with the 
surE gene disrupted are found to survive poorly in stationary 
phase. It is suggested that SurE may be involved in stress 
response. Yeast also contains a member of the family. Yarrowia 
lipolytica PHO2 can complement a mutation in acid phosphatase, 
suggesting that members of this family could be phosphatases.
Length=187

 Score = 188 bits (479),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 77/215 (36%), Positives = 101/215 (47%), Gaps = 30/215 (14%)

Query  3    ILVVNDDGPPSRRLSPYIRPFVDALQAAGHQVSVAIPARSRSWIGKAHIIEAALEATYVP  62
            IL+ NDDG  +    P IR  V+AL AA H V+V  P   RS +G +  +   L AT V 
Sbjct  1    ILLTNDDGIDA----PGIRALVEALAAA-HDVTVVAPDSERSGVGHSITLHEPLRATEV-  54

Query  63   PDAFQEDGTWDEAYETPDEDESKLEWVVITNGTPASCTQLGLFNLFADRGPIDLVISGPN  122
                              E +    + V  +GTPA C +L L  L   +   DLV+SG N
Sbjct  55   -----------------VEIDGAEAYAV--SGTPADCVKLALSGLLLRKP--DLVVSGIN  93

Query  123  HGRNASTIYNLSSGTVGGALEAAICGKRGIAISFGSKDEQPIEVIRAAARLAVRVVNHLY  182
            HG N  T   L SGTVG A+EAA+ G   IA+S  S  +   E   AAAR A R+V  L 
Sbjct  94   HGANLGTDV-LYSGTVGAAMEAALLGIPSIAVSLASFSDD--EDFEAAARFAARLVEKLI  150

Query  183  QNWDERVELYNLNVPMRADVETRPVLYTRTLPYYW  217
            +      +L N+NVP     E + +  TR     +
Sbjct  151  EALLPGGDLLNVNVPDVPAEEIKGIKVTRQGRRRY  185



Lambda      K        H        a         alpha
   0.314    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00006669

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460400 pfam01975, SurE, Survival protein SurE. E. coli cells ...  188     8e-60


>CDD:460400 pfam01975, SurE, Survival protein SurE.  E. coli cells with the 
surE gene disrupted are found to survive poorly in stationary 
phase. It is suggested that SurE may be involved in stress 
response. Yeast also contains a member of the family. Yarrowia 
lipolytica PHO2 can complement a mutation in acid phosphatase, 
suggesting that members of this family could be phosphatases.
Length=187

 Score = 188 bits (479),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 77/215 (36%), Positives = 101/215 (47%), Gaps = 30/215 (14%)

Query  3    ILVVNDDGPPSRRLSPYIRPFVDALQAAGHQVSVAIPARSRSWIGKAHIIEAALEATYVP  62
            IL+ NDDG  +    P IR  V+AL AA H V+V  P   RS +G +  +   L AT V 
Sbjct  1    ILLTNDDGIDA----PGIRALVEALAAA-HDVTVVAPDSERSGVGHSITLHEPLRATEV-  54

Query  63   PDAFQEDGTWDEAYETPDEDESKLEWVVITNGTPASCTQLGLFNLFADRGPIDLVISGPN  122
                              E +    + V  +GTPA C +L L  L   +   DLV+SG N
Sbjct  55   -----------------VEIDGAEAYAV--SGTPADCVKLALSGLLLRKP--DLVVSGIN  93

Query  123  HGRNASTIYNLSSGTVGGALEAAICGKRGIAISFGSKDEQPIEVIRAAARLAVRVVNHLY  182
            HG N  T   L SGTVG A+EAA+ G   IA+S  S  +   E   AAAR A R+V  L 
Sbjct  94   HGANLGTDV-LYSGTVGAAMEAALLGIPSIAVSLASFSDD--EDFEAAARFAARLVEKLI  150

Query  183  QNWDERVELYNLNVPMRADVETRPVLYTRTLPYYW  217
            +      +L N+NVP     E + +  TR     +
Sbjct  151  EALLPGGDLLNVNVPDVPAEEIKGIKVTRQGRRRY  185



Lambda      K        H        a         alpha
   0.314    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00006670

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460400 pfam01975, SurE, Survival protein SurE. E. coli cells ...  189     3e-60


>CDD:460400 pfam01975, SurE, Survival protein SurE.  E. coli cells with the 
surE gene disrupted are found to survive poorly in stationary 
phase. It is suggested that SurE may be involved in stress 
response. Yeast also contains a member of the family. Yarrowia 
lipolytica PHO2 can complement a mutation in acid phosphatase, 
suggesting that members of this family could be phosphatases.
Length=187

 Score = 189 bits (483),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 77/215 (36%), Positives = 101/215 (47%), Gaps = 30/215 (14%)

Query  3    ILVVNDDGPPSRRLSPYIRPFVDALQAAGHQVSVAIPARSRSWIGKAHIIEAALEATYVP  62
            IL+ NDDG  +    P IR  V+AL AA H V+V  P   RS +G +  +   L AT V 
Sbjct  1    ILLTNDDGIDA----PGIRALVEALAAA-HDVTVVAPDSERSGVGHSITLHEPLRATEV-  54

Query  63   PDAFQEDGTWDEAYETPDEDESKLEWVVITNGTPASCTQLGLFNLFADRGPIDLVISGPN  122
                              E +    + V  +GTPA C +L L  L   +   DLV+SG N
Sbjct  55   -----------------VEIDGAEAYAV--SGTPADCVKLALSGLLLRKP--DLVVSGIN  93

Query  123  HGRNASTIYNLSSGTVGGALEAAICGKRGIAISFGSKDEQPIEVIRAAARLAVRVVNHLY  182
            HG N  T   L SGTVG A+EAA+ G   IA+S  S  +   E   AAAR A R+V  L 
Sbjct  94   HGANLGTDV-LYSGTVGAAMEAALLGIPSIAVSLASFSDD--EDFEAAARFAARLVEKLI  150

Query  183  QNWDERVELYNLNVPMRADVETRPVLYTRTLPYYW  217
            +      +L N+NVP     E + +  TR     +
Sbjct  151  EALLPGGDLLNVNVPDVPAEEIKGIKVTRQGRRRY  185



Lambda      K        H        a         alpha
   0.315    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00006671

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460400 pfam01975, SurE, Survival protein SurE. E. coli cells ...  189     3e-60


>CDD:460400 pfam01975, SurE, Survival protein SurE.  E. coli cells with the 
surE gene disrupted are found to survive poorly in stationary 
phase. It is suggested that SurE may be involved in stress 
response. Yeast also contains a member of the family. Yarrowia 
lipolytica PHO2 can complement a mutation in acid phosphatase, 
suggesting that members of this family could be phosphatases.
Length=187

 Score = 189 bits (483),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 77/215 (36%), Positives = 101/215 (47%), Gaps = 30/215 (14%)

Query  3    ILVVNDDGPPSRRLSPYIRPFVDALQAAGHQVSVAIPARSRSWIGKAHIIEAALEATYVP  62
            IL+ NDDG  +    P IR  V+AL AA H V+V  P   RS +G +  +   L AT V 
Sbjct  1    ILLTNDDGIDA----PGIRALVEALAAA-HDVTVVAPDSERSGVGHSITLHEPLRATEV-  54

Query  63   PDAFQEDGTWDEAYETPDEDESKLEWVVITNGTPASCTQLGLFNLFADRGPIDLVISGPN  122
                              E +    + V  +GTPA C +L L  L   +   DLV+SG N
Sbjct  55   -----------------VEIDGAEAYAV--SGTPADCVKLALSGLLLRKP--DLVVSGIN  93

Query  123  HGRNASTIYNLSSGTVGGALEAAICGKRGIAISFGSKDEQPIEVIRAAARLAVRVVNHLY  182
            HG N  T   L SGTVG A+EAA+ G   IA+S  S  +   E   AAAR A R+V  L 
Sbjct  94   HGANLGTDV-LYSGTVGAAMEAALLGIPSIAVSLASFSDD--EDFEAAARFAARLVEKLI  150

Query  183  QNWDERVELYNLNVPMRADVETRPVLYTRTLPYYW  217
            +      +L N+NVP     E + +  TR     +
Sbjct  151  EALLPGGDLLNVNVPDVPAEEIKGIKVTRQGRRRY  185



Lambda      K        H        a         alpha
   0.315    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00000555

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460400 pfam01975, SurE, Survival protein SurE. E. coli cells ...  188     8e-60


>CDD:460400 pfam01975, SurE, Survival protein SurE.  E. coli cells with the 
surE gene disrupted are found to survive poorly in stationary 
phase. It is suggested that SurE may be involved in stress 
response. Yeast also contains a member of the family. Yarrowia 
lipolytica PHO2 can complement a mutation in acid phosphatase, 
suggesting that members of this family could be phosphatases.
Length=187

 Score = 188 bits (479),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 77/215 (36%), Positives = 101/215 (47%), Gaps = 30/215 (14%)

Query  3    ILVVNDDGPPSRRLSPYIRPFVDALQAAGHQVSVAIPARSRSWIGKAHIIEAALEATYVP  62
            IL+ NDDG  +    P IR  V+AL AA H V+V  P   RS +G +  +   L AT V 
Sbjct  1    ILLTNDDGIDA----PGIRALVEALAAA-HDVTVVAPDSERSGVGHSITLHEPLRATEV-  54

Query  63   PDAFQEDGTWDEAYETPDEDESKLEWVVITNGTPASCTQLGLFNLFADRGPIDLVISGPN  122
                              E +    + V  +GTPA C +L L  L   +   DLV+SG N
Sbjct  55   -----------------VEIDGAEAYAV--SGTPADCVKLALSGLLLRKP--DLVVSGIN  93

Query  123  HGRNASTIYNLSSGTVGGALEAAICGKRGIAISFGSKDEQPIEVIRAAARLAVRVVNHLY  182
            HG N  T   L SGTVG A+EAA+ G   IA+S  S  +   E   AAAR A R+V  L 
Sbjct  94   HGANLGTDV-LYSGTVGAAMEAALLGIPSIAVSLASFSDD--EDFEAAARFAARLVEKLI  150

Query  183  QNWDERVELYNLNVPMRADVETRPVLYTRTLPYYW  217
            +      +L N+NVP     E + +  TR     +
Sbjct  151  EALLPGGDLLNVNVPDVPAEEIKGIKVTRQGRRRY  185



Lambda      K        H        a         alpha
   0.314    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00006672

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460400 pfam01975, SurE, Survival protein SurE. E. coli cells ...  189     1e-60


>CDD:460400 pfam01975, SurE, Survival protein SurE.  E. coli cells with the 
surE gene disrupted are found to survive poorly in stationary 
phase. It is suggested that SurE may be involved in stress 
response. Yeast also contains a member of the family. Yarrowia 
lipolytica PHO2 can complement a mutation in acid phosphatase, 
suggesting that members of this family could be phosphatases.
Length=187

 Score = 189 bits (484),  Expect = 1e-60, Method: Composition-based stats.
 Identities = 77/215 (36%), Positives = 101/215 (47%), Gaps = 30/215 (14%)

Query  3    ILVVNDDGPPSRRLSPYIRPFVDALQAAGHQVSVAIPARSRSWIGKAHIIEAALEATYVP  62
            IL+ NDDG  +    P IR  V+AL AA H V+V  P   RS +G +  +   L AT V 
Sbjct  1    ILLTNDDGIDA----PGIRALVEALAAA-HDVTVVAPDSERSGVGHSITLHEPLRATEV-  54

Query  63   PDAFQEDGTWDEAYETPDEDESKLEWVVITNGTPASCTQLGLFNLFADRGPIDLVISGPN  122
                              E +    + V  +GTPA C +L L  L   +   DLV+SG N
Sbjct  55   -----------------VEIDGAEAYAV--SGTPADCVKLALSGLLLRKP--DLVVSGIN  93

Query  123  HGRNASTIYNLSSGTVGGALEAAICGKRGIAISFGSKDEQPIEVIRAAARLAVRVVNHLY  182
            HG N  T   L SGTVG A+EAA+ G   IA+S  S  +   E   AAAR A R+V  L 
Sbjct  94   HGANLGTDV-LYSGTVGAAMEAALLGIPSIAVSLASFSDD--EDFEAAARFAARLVEKLI  150

Query  183  QNWDERVELYNLNVPMRADVETRPVLYTRTLPYYW  217
            +      +L N+NVP     E + +  TR     +
Sbjct  151  EALLPGGDLLNVNVPDVPAEEIKGIKVTRQGRRRY  185



Lambda      K        H        a         alpha
   0.317    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00006673

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460400 pfam01975, SurE, Survival protein SurE. E. coli cells ...  189     3e-60


>CDD:460400 pfam01975, SurE, Survival protein SurE.  E. coli cells with the 
surE gene disrupted are found to survive poorly in stationary 
phase. It is suggested that SurE may be involved in stress 
response. Yeast also contains a member of the family. Yarrowia 
lipolytica PHO2 can complement a mutation in acid phosphatase, 
suggesting that members of this family could be phosphatases.
Length=187

 Score = 189 bits (484),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 77/215 (36%), Positives = 101/215 (47%), Gaps = 30/215 (14%)

Query  3    ILVVNDDGPPSRRLSPYIRPFVDALQAAGHQVSVAIPARSRSWIGKAHIIEAALEATYVP  62
            IL+ NDDG  +    P IR  V+AL AA H V+V  P   RS +G +  +   L AT V 
Sbjct  1    ILLTNDDGIDA----PGIRALVEALAAA-HDVTVVAPDSERSGVGHSITLHEPLRATEV-  54

Query  63   PDAFQEDGTWDEAYETPDEDESKLEWVVITNGTPASCTQLGLFNLFADRGPIDLVISGPN  122
                              E +    + V  +GTPA C +L L  L   +   DLV+SG N
Sbjct  55   -----------------VEIDGAEAYAV--SGTPADCVKLALSGLLLRKP--DLVVSGIN  93

Query  123  HGRNASTIYNLSSGTVGGALEAAICGKRGIAISFGSKDEQPIEVIRAAARLAVRVVNHLY  182
            HG N  T   L SGTVG A+EAA+ G   IA+S  S  +   E   AAAR A R+V  L 
Sbjct  94   HGANLGTDV-LYSGTVGAAMEAALLGIPSIAVSLASFSDD--EDFEAAARFAARLVEKLI  150

Query  183  QNWDERVELYNLNVPMRADVETRPVLYTRTLPYYW  217
            +      +L N+NVP     E + +  TR     +
Sbjct  151  EALLPGGDLLNVNVPDVPAEEIKGIKVTRQGRRRY  185



Lambda      K        H        a         alpha
   0.316    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00000556

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460400 pfam01975, SurE, Survival protein SurE. E. coli cells ...  189     3e-60


>CDD:460400 pfam01975, SurE, Survival protein SurE.  E. coli cells with the 
surE gene disrupted are found to survive poorly in stationary 
phase. It is suggested that SurE may be involved in stress 
response. Yeast also contains a member of the family. Yarrowia 
lipolytica PHO2 can complement a mutation in acid phosphatase, 
suggesting that members of this family could be phosphatases.
Length=187

 Score = 189 bits (484),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 77/215 (36%), Positives = 101/215 (47%), Gaps = 30/215 (14%)

Query  3    ILVVNDDGPPSRRLSPYIRPFVDALQAAGHQVSVAIPARSRSWIGKAHIIEAALEATYVP  62
            IL+ NDDG  +    P IR  V+AL AA H V+V  P   RS +G +  +   L AT V 
Sbjct  1    ILLTNDDGIDA----PGIRALVEALAAA-HDVTVVAPDSERSGVGHSITLHEPLRATEV-  54

Query  63   PDAFQEDGTWDEAYETPDEDESKLEWVVITNGTPASCTQLGLFNLFADRGPIDLVISGPN  122
                              E +    + V  +GTPA C +L L  L   +   DLV+SG N
Sbjct  55   -----------------VEIDGAEAYAV--SGTPADCVKLALSGLLLRKP--DLVVSGIN  93

Query  123  HGRNASTIYNLSSGTVGGALEAAICGKRGIAISFGSKDEQPIEVIRAAARLAVRVVNHLY  182
            HG N  T   L SGTVG A+EAA+ G   IA+S  S  +   E   AAAR A R+V  L 
Sbjct  94   HGANLGTDV-LYSGTVGAAMEAALLGIPSIAVSLASFSDD--EDFEAAARFAARLVEKLI  150

Query  183  QNWDERVELYNLNVPMRADVETRPVLYTRTLPYYW  217
            +      +L N+NVP     E + +  TR     +
Sbjct  151  EALLPGGDLLNVNVPDVPAEEIKGIKVTRQGRRRY  185



Lambda      K        H        a         alpha
   0.316    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00000557

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460400 pfam01975, SurE, Survival protein SurE. E. coli cells ...  185     3e-58


>CDD:460400 pfam01975, SurE, Survival protein SurE.  E. coli cells with the 
surE gene disrupted are found to survive poorly in stationary 
phase. It is suggested that SurE may be involved in stress 
response. Yeast also contains a member of the family. Yarrowia 
lipolytica PHO2 can complement a mutation in acid phosphatase, 
suggesting that members of this family could be phosphatases.
Length=187

 Score = 185 bits (473),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 75/213 (35%), Positives = 99/213 (46%), Gaps = 30/213 (14%)

Query  43   VVNDDGPPSRRLSPYIRPFVDALQAAGHQVSVAIPARSRSWIGKAHIIEAALEATYVPPD  102
            + NDDG  +    P IR  V+AL AA H V+V  P   RS +G +  +   L AT V   
Sbjct  3    LTNDDGIDA----PGIRALVEALAAA-HDVTVVAPDSERSGVGHSITLHEPLRATEV---  54

Query  103  AFQEDGTWDEAYETPDEDESKLEWVVITNGTPASCTQLGLFNLFADRGPIDLVISGPNHG  162
                            E +    + V  +GTPA C +L L  L   +   DLV+SG NHG
Sbjct  55   ---------------VEIDGAEAYAV--SGTPADCVKLALSGLLLRKP--DLVVSGINHG  95

Query  163  RNASTIYNLSSGTVGGALEAAICGKRGIAISFGSKDEQPIEVIRAAARLAVRVVNHLYQN  222
             N  T   L SGTVG A+EAA+ G   IA+S  S  +   E   AAAR A R+V  L + 
Sbjct  96   ANLGTDV-LYSGTVGAAMEAALLGIPSIAVSLASFSDD--EDFEAAARFAARLVEKLIEA  152

Query  223  WDERVELYNLNVPMRADVETRPVLYTRTLPYYW  255
                 +L N+NVP     E + +  TR     +
Sbjct  153  LLPGGDLLNVNVPDVPAEEIKGIKVTRQGRRRY  185



Lambda      K        H        a         alpha
   0.317    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00000558

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00000559

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00006676

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00006677

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00000560

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00006678

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00006679

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00006680

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00000562

Length=732


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 928386976


Query= TCONS_00000561

Length=732


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 928386976


Query= TCONS_00006681

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00000563

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00000564

Length=868


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1109652322


Query= TCONS_00006682

Length=732


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 928386976


Query= TCONS_00006683

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00000565

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461238 pfam04253, TFR_dimer, Transferrin receptor-like dimeri...  125     1e-36


>CDD:461238 pfam04253, TFR_dimer, Transferrin receptor-like dimerization 
domain.  This domain is involved in dimerization of the transferrin 
receptor as shown in its crystal structure.
Length=116

 Score = 125 bits (316),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 51/110 (46%), Positives = 67/110 (61%), Gaps = 12/110 (11%)

Query  171  FNLEPLDKAIARLQKVAAKFDAEAAELTSQLDENLPWWLWWKKVRLYFLIRGVNDKYKAF  230
             +LEPL KAI + +K A +FDA A +                K      +R VNDK   F
Sbjct  1    LSLEPLRKAIEKFKKAAKEFDAWAKKWEDI------------KEPDLLAVRAVNDKLMLF  48

Query  231  ERKFLYQPGLDGRNWYKHVVFAPGIWTGYAGATYPGLVESLDAGDLKNAK  280
            ER FL   GL GR W+KHVVFAPG+WTGYAGAT+PG+ ++++AGD + A+
Sbjct  49   ERAFLDPEGLPGRPWFKHVVFAPGLWTGYAGATFPGIRDAIEAGDWELAQ  98



Lambda      K        H        a         alpha
   0.320    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00006685

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00006686

Length=439


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00006687

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00000566

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00000567

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00000568

Length=374


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00000569

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00000571

Length=690
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:368366 pfam05277, DUF726, Protein of unknown function (DUF726...  194     1e-56


>CDD:368366 pfam05277, DUF726, Protein of unknown function (DUF726).  This 
family consists of several uncharacterized eukaryotic proteins.
Length=341

 Score = 194 bits (495),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 61/157 (39%), Positives = 99/157 (63%), Gaps = 5/157 (3%)

Query  533  RKMALKRKYMVMGLATVGGGLIIGLSAGLLAPVIGAGLAAGFTTVGISGTSAFLGGAGGT  592
            R++   ++Y+++GLA +GGG +IGL+ GL AP++ AG+ A F   G+ G++ FL   GG+
Sbjct  1    RRI---KRYILIGLAGLGGGALIGLTGGLAAPLVAAGIGALFGGFGLGGSAGFLASTGGS  57

Query  593  ALIASGATLTGSTIGLRASHRRTGAVQTFEYRPLHNNKRVNLIVAISGWM-TGKVDDVRL  651
            A+I +     G+ +      +R GA++TFE+ PL  N+ ++L V +SGW   G  DDV  
Sbjct  58   AVITALFGAAGAGLTGYKMSKRVGAIKTFEFIPLSGNRSLSLTVTVSGWGELGDEDDVTN  117

Query  652  PFSTVDPIMGDIYSVLWEPEMLQSMGATI-NILATEV  687
            P+  +DP  GD+Y++ WE E L+ +G  +  ILA+E 
Sbjct  118  PWRALDPNCGDLYALKWEVEYLKELGNALETILASEA  154



Lambda      K        H        a         alpha
   0.310    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 880449630


Query= TCONS_00000570

Length=690
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:368366 pfam05277, DUF726, Protein of unknown function (DUF726...  194     1e-56


>CDD:368366 pfam05277, DUF726, Protein of unknown function (DUF726).  This 
family consists of several uncharacterized eukaryotic proteins.
Length=341

 Score = 194 bits (495),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 61/157 (39%), Positives = 99/157 (63%), Gaps = 5/157 (3%)

Query  533  RKMALKRKYMVMGLATVGGGLIIGLSAGLLAPVIGAGLAAGFTTVGISGTSAFLGGAGGT  592
            R++   ++Y+++GLA +GGG +IGL+ GL AP++ AG+ A F   G+ G++ FL   GG+
Sbjct  1    RRI---KRYILIGLAGLGGGALIGLTGGLAAPLVAAGIGALFGGFGLGGSAGFLASTGGS  57

Query  593  ALIASGATLTGSTIGLRASHRRTGAVQTFEYRPLHNNKRVNLIVAISGWM-TGKVDDVRL  651
            A+I +     G+ +      +R GA++TFE+ PL  N+ ++L V +SGW   G  DDV  
Sbjct  58   AVITALFGAAGAGLTGYKMSKRVGAIKTFEFIPLSGNRSLSLTVTVSGWGELGDEDDVTN  117

Query  652  PFSTVDPIMGDIYSVLWEPEMLQSMGATI-NILATEV  687
            P+  +DP  GD+Y++ WE E L+ +G  +  ILA+E 
Sbjct  118  PWRALDPNCGDLYALKWEVEYLKELGNALETILASEA  154



Lambda      K        H        a         alpha
   0.310    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 880449630


Query= TCONS_00000572

Length=425


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521922912


Query= TCONS_00000573

Length=351


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00000574

Length=351


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00006688

Length=351


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00006689

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0774    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00000577

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00000576

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00000575

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00000579

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00006690

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00006691

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00000583

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  70.9    6e-15


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 70.9 bits (174),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 46/232 (20%), Positives = 67/232 (29%), Gaps = 89/232 (38%)

Query  109  ETWIMHGTLLAWWWNQKIFPWDNDLDVQVTEPTIHFLAEYYN--------MTEHHFELPG  160
              W+  GTLL    +    PWD+D+D+Q+       LA+ +N        + E + +   
Sbjct  7    IYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGNKDDNY  66

Query  161  VDGGRNYLLEINPQYVVRTTEDAANVIDARWIDTSSGLFIDITAV---------------  205
               G   LL++N    VR   +  N          SGLFIDI  +               
Sbjct  67   FFPGA-KLLDVNTSITVRVNGNGKN---------DSGLFIDIFPLDSVPDSPEEIYKVKL  116

Query  206  ---------------------------------------------RKDDELRKKG-----  215
                                                         + +  L+KK      
Sbjct  117  KNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAEYDLS  176

Query  216  --QQGALMCKD----GHRFDETDIFPLRNSYFEDFPVKVPYKYTDLLVEEYG  261
              Q   L           F   +  PLR + FE     +P  Y   L  EYG
Sbjct  177  PSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEYG  228



Lambda      K        H        a         alpha
   0.322    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00000585

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  71.3    9e-16


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 71.3 bits (175),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 46/232 (20%), Positives = 67/232 (29%), Gaps = 89/232 (38%)

Query  7    ETWIMHGTLLAWWWNQKIFPWDNDLDVQVTEPTIHFLAEYYN--------MTEHHFELPG  58
              W+  GTLL    +    PWD+D+D+Q+       LA+ +N        + E + +   
Sbjct  7    IYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGNKDDNY  66

Query  59   VDGGRNYLLEINPQYVVRTTEDAANVIDARWIDTSSGLFIDITAV---------------  103
               G   LL++N    VR   +  N          SGLFIDI  +               
Sbjct  67   FFPGA-KLLDVNTSITVRVNGNGKN---------DSGLFIDIFPLDSVPDSPEEIYKVKL  116

Query  104  ---------------------------------------------RKDDELRKKG-----  113
                                                         + +  L+KK      
Sbjct  117  KNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAEYDLS  176

Query  114  --QQGALMCKD----GHRFDETDIFPLRNSYFEDFPVKVPYKYTDLLVEEYG  159
              Q   L           F   +  PLR + FE     +P  Y   L  EYG
Sbjct  177  PSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEYG  228



Lambda      K        H        a         alpha
   0.320    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00000584

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  71.3    4e-15


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 71.3 bits (175),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 46/232 (20%), Positives = 67/232 (29%), Gaps = 89/232 (38%)

Query  104  ETWIMHGTLLAWWWNQKIFPWDNDLDVQVTEPTIHFLAEYYN--------MTEHHFELPG  155
              W+  GTLL    +    PWD+D+D+Q+       LA+ +N        + E + +   
Sbjct  7    IYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGNKDDNY  66

Query  156  VDGGRNYLLEINPQYVVRTTEDAANVIDARWIDTSSGLFIDITAV---------------  200
               G   LL++N    VR   +  N          SGLFIDI  +               
Sbjct  67   FFPGA-KLLDVNTSITVRVNGNGKN---------DSGLFIDIFPLDSVPDSPEEIYKVKL  116

Query  201  ---------------------------------------------RKDDELRKKG-----  210
                                                         + +  L+KK      
Sbjct  117  KNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAEYDLS  176

Query  211  --QQGALMCKD----GHRFDETDIFPLRNSYFEDFPVKVPYKYTDLLVEEYG  256
              Q   L           F   +  PLR + FE     +P  Y   L  EYG
Sbjct  177  PSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEYG  228



Lambda      K        H        a         alpha
   0.321    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00006693

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  70.9    1e-15


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 70.9 bits (174),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 46/232 (20%), Positives = 67/232 (29%), Gaps = 89/232 (38%)

Query  7    ETWIMHGTLLAWWWNQKIFPWDNDLDVQVTEPTIHFLAEYYN--------MTEHHFELPG  58
              W+  GTLL    +    PWD+D+D+Q+       LA+ +N        + E + +   
Sbjct  7    IYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGNKDDNY  66

Query  59   VDGGRNYLLEINPQYVVRTTEDAANVIDARWIDTSSGLFIDITAV---------------  103
               G   LL++N    VR   +  N          SGLFIDI  +               
Sbjct  67   FFPGA-KLLDVNTSITVRVNGNGKN---------DSGLFIDIFPLDSVPDSPEEIYKVKL  116

Query  104  ---------------------------------------------RKDDELRKKG-----  113
                                                         + +  L+KK      
Sbjct  117  KNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAEYDLS  176

Query  114  --QQGALMCKD----GHRFDETDIFPLRNSYFEDFPVKVPYKYTDLLVEEYG  159
              Q   L           F   +  PLR + FE     +P  Y   L  EYG
Sbjct  177  PSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEYG  228



Lambda      K        H        a         alpha
   0.320    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00006692

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  71.3    4e-15


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 71.3 bits (175),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 46/232 (20%), Positives = 67/232 (29%), Gaps = 89/232 (38%)

Query  104  ETWIMHGTLLAWWWNQKIFPWDNDLDVQVTEPTIHFLAEYYN--------MTEHHFELPG  155
              W+  GTLL    +    PWD+D+D+Q+       LA+ +N        + E + +   
Sbjct  7    IYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGNKDDNY  66

Query  156  VDGGRNYLLEINPQYVVRTTEDAANVIDARWIDTSSGLFIDITAV---------------  200
               G   LL++N    VR   +  N          SGLFIDI  +               
Sbjct  67   FFPGA-KLLDVNTSITVRVNGNGKN---------DSGLFIDIFPLDSVPDSPEEIYKVKL  116

Query  201  ---------------------------------------------RKDDELRKKG-----  210
                                                         + +  L+KK      
Sbjct  117  KNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAEYDLS  176

Query  211  --QQGALMCKD----GHRFDETDIFPLRNSYFEDFPVKVPYKYTDLLVEEYG  256
              Q   L           F   +  PLR + FE     +P  Y   L  EYG
Sbjct  177  PSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEYG  228



Lambda      K        H        a         alpha
   0.320    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00000590

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00000587

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  70.9    5e-15


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 70.9 bits (174),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 46/232 (20%), Positives = 67/232 (29%), Gaps = 89/232 (38%)

Query  104  ETWIMHGTLLAWWWNQKIFPWDNDLDVQVTEPTIHFLAEYYN--------MTEHHFELPG  155
              W+  GTLL    +    PWD+D+D+Q+       LA+ +N        + E + +   
Sbjct  7    IYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGNKDDNY  66

Query  156  VDGGRNYLLEINPQYVVRTTEDAANVIDARWIDTSSGLFIDITAV---------------  200
               G   LL++N    VR   +  N          SGLFIDI  +               
Sbjct  67   FFPGA-KLLDVNTSITVRVNGNGKN---------DSGLFIDIFPLDSVPDSPEEIYKVKL  116

Query  201  ---------------------------------------------RKDDELRKKG-----  210
                                                         + +  L+KK      
Sbjct  117  KNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAEYDLS  176

Query  211  --QQGALMCKD----GHRFDETDIFPLRNSYFEDFPVKVPYKYTDLLVEEYG  256
              Q   L           F   +  PLR + FE     +P  Y   L  EYG
Sbjct  177  PSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEYG  228



Lambda      K        H        a         alpha
   0.321    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00000586

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  70.9    1e-15


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 70.9 bits (174),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 46/232 (20%), Positives = 67/232 (29%), Gaps = 89/232 (38%)

Query  7    ETWIMHGTLLAWWWNQKIFPWDNDLDVQVTEPTIHFLAEYYN--------MTEHHFELPG  58
              W+  GTLL    +    PWD+D+D+Q+       LA+ +N        + E + +   
Sbjct  7    IYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGNKDDNY  66

Query  59   VDGGRNYLLEINPQYVVRTTEDAANVIDARWIDTSSGLFIDITAV---------------  103
               G   LL++N    VR   +  N          SGLFIDI  +               
Sbjct  67   FFPGA-KLLDVNTSITVRVNGNGKN---------DSGLFIDIFPLDSVPDSPEEIYKVKL  116

Query  104  ---------------------------------------------RKDDELRKKG-----  113
                                                         + +  L+KK      
Sbjct  117  KNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAEYDLS  176

Query  114  --QQGALMCKD----GHRFDETDIFPLRNSYFEDFPVKVPYKYTDLLVEEYG  159
              Q   L           F   +  PLR + FE     +P  Y   L  EYG
Sbjct  177  PSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEYG  228



Lambda      K        H        a         alpha
   0.320    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00000588

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  70.5    1e-15


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 70.5 bits (173),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 46/232 (20%), Positives = 67/232 (29%), Gaps = 89/232 (38%)

Query  7    ETWIMHGTLLAWWWNQKIFPWDNDLDVQVTEPTIHFLAEYYN--------MTEHHFELPG  58
              W+  GTLL    +    PWD+D+D+Q+       LA+ +N        + E + +   
Sbjct  7    IYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGNKDDNY  66

Query  59   VDGGRNYLLEINPQYVVRTTEDAANVIDARWIDTSSGLFIDITAV---------------  103
               G   LL++N    VR   +  N          SGLFIDI  +               
Sbjct  67   FFPGA-KLLDVNTSITVRVNGNGKN---------DSGLFIDIFPLDSVPDSPEEIYKVKL  116

Query  104  ---------------------------------------------RKDDELRKKG-----  113
                                                         + +  L+KK      
Sbjct  117  KNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAEYDLS  176

Query  114  --QQGALMCKD----GHRFDETDIFPLRNSYFEDFPVKVPYKYTDLLVEEYG  159
              Q   L           F   +  PLR + FE     +P  Y   L  EYG
Sbjct  177  PSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEYG  228



Lambda      K        H        a         alpha
   0.319    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00000589

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  71.3    9e-16


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 71.3 bits (175),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 46/232 (20%), Positives = 67/232 (29%), Gaps = 89/232 (38%)

Query  7    ETWIMHGTLLAWWWNQKIFPWDNDLDVQVTEPTIHFLAEYYN--------MTEHHFELPG  58
              W+  GTLL    +    PWD+D+D+Q+       LA+ +N        + E + +   
Sbjct  7    IYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGNKDDNY  66

Query  59   VDGGRNYLLEINPQYVVRTTEDAANVIDARWIDTSSGLFIDITAV---------------  103
               G   LL++N    VR   +  N          SGLFIDI  +               
Sbjct  67   FFPGA-KLLDVNTSITVRVNGNGKN---------DSGLFIDIFPLDSVPDSPEEIYKVKL  116

Query  104  ---------------------------------------------RKDDELRKKG-----  113
                                                         + +  L+KK      
Sbjct  117  KNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAEYDLS  176

Query  114  --QQGALMCKD----GHRFDETDIFPLRNSYFEDFPVKVPYKYTDLLVEEYG  159
              Q   L           F   +  PLR + FE     +P  Y   L  EYG
Sbjct  177  PSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEYG  228



Lambda      K        H        a         alpha
   0.320    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00006694

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00000591

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  71.3    5e-15


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 71.3 bits (175),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 46/232 (20%), Positives = 67/232 (29%), Gaps = 89/232 (38%)

Query  109  ETWIMHGTLLAWWWNQKIFPWDNDLDVQVTEPTIHFLAEYYN--------MTEHHFELPG  160
              W+  GTLL    +    PWD+D+D+Q+       LA+ +N        + E + +   
Sbjct  7    IYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGNKDDNY  66

Query  161  VDGGRNYLLEINPQYVVRTTEDAANVIDARWIDTSSGLFIDITAV---------------  205
               G   LL++N    VR   +  N          SGLFIDI  +               
Sbjct  67   FFPGA-KLLDVNTSITVRVNGNGKN---------DSGLFIDIFPLDSVPDSPEEIYKVKL  116

Query  206  ---------------------------------------------RKDDELRKKG-----  215
                                                         + +  L+KK      
Sbjct  117  KNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAEYDLS  176

Query  216  --QQGALMCKD----GHRFDETDIFPLRNSYFEDFPVKVPYKYTDLLVEEYG  261
              Q   L           F   +  PLR + FE     +P  Y   L  EYG
Sbjct  177  PSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEYG  228



Lambda      K        H        a         alpha
   0.321    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00006695

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  71.3    9e-16


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 71.3 bits (175),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 46/232 (20%), Positives = 67/232 (29%), Gaps = 89/232 (38%)

Query  7    ETWIMHGTLLAWWWNQKIFPWDNDLDVQVTEPTIHFLAEYYN--------MTEHHFELPG  58
              W+  GTLL    +    PWD+D+D+Q+       LA+ +N        + E + +   
Sbjct  7    IYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGNKDDNY  66

Query  59   VDGGRNYLLEINPQYVVRTTEDAANVIDARWIDTSSGLFIDITAV---------------  103
               G   LL++N    VR   +  N          SGLFIDI  +               
Sbjct  67   FFPGA-KLLDVNTSITVRVNGNGKN---------DSGLFIDIFPLDSVPDSPEEIYKVKL  116

Query  104  ---------------------------------------------RKDDELRKKG-----  113
                                                         + +  L+KK      
Sbjct  117  KNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAEYDLS  176

Query  114  --QQGALMCKD----GHRFDETDIFPLRNSYFEDFPVKVPYKYTDLLVEEYG  159
              Q   L           F   +  PLR + FE     +P  Y   L  EYG
Sbjct  177  PSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEYG  228



Lambda      K        H        a         alpha
   0.320    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00006696

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  71.3    9e-16


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 71.3 bits (175),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 46/232 (20%), Positives = 67/232 (29%), Gaps = 89/232 (38%)

Query  7    ETWIMHGTLLAWWWNQKIFPWDNDLDVQVTEPTIHFLAEYYN--------MTEHHFELPG  58
              W+  GTLL    +    PWD+D+D+Q+       LA+ +N        + E + +   
Sbjct  7    IYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGNKDDNY  66

Query  59   VDGGRNYLLEINPQYVVRTTEDAANVIDARWIDTSSGLFIDITAV---------------  103
               G   LL++N    VR   +  N          SGLFIDI  +               
Sbjct  67   FFPGA-KLLDVNTSITVRVNGNGKN---------DSGLFIDIFPLDSVPDSPEEIYKVKL  116

Query  104  ---------------------------------------------RKDDELRKKG-----  113
                                                         + +  L+KK      
Sbjct  117  KNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAEYDLS  176

Query  114  --QQGALMCKD----GHRFDETDIFPLRNSYFEDFPVKVPYKYTDLLVEEYG  159
              Q   L           F   +  PLR + FE     +P  Y   L  EYG
Sbjct  177  PSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEYG  228



Lambda      K        H        a         alpha
   0.320    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00000592

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  71.3    9e-16


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 71.3 bits (175),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 46/232 (20%), Positives = 67/232 (29%), Gaps = 89/232 (38%)

Query  7    ETWIMHGTLLAWWWNQKIFPWDNDLDVQVTEPTIHFLAEYYN--------MTEHHFELPG  58
              W+  GTLL    +    PWD+D+D+Q+       LA+ +N        + E + +   
Sbjct  7    IYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGNKDDNY  66

Query  59   VDGGRNYLLEINPQYVVRTTEDAANVIDARWIDTSSGLFIDITAV---------------  103
               G   LL++N    VR   +  N          SGLFIDI  +               
Sbjct  67   FFPGA-KLLDVNTSITVRVNGNGKN---------DSGLFIDIFPLDSVPDSPEEIYKVKL  116

Query  104  ---------------------------------------------RKDDELRKKG-----  113
                                                         + +  L+KK      
Sbjct  117  KNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAEYDLS  176

Query  114  --QQGALMCKD----GHRFDETDIFPLRNSYFEDFPVKVPYKYTDLLVEEYG  159
              Q   L           F   +  PLR + FE     +P  Y   L  EYG
Sbjct  177  PSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEYG  228



Lambda      K        H        a         alpha
   0.320    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00006697

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  70.9    1e-15


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 70.9 bits (174),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 46/232 (20%), Positives = 67/232 (29%), Gaps = 89/232 (38%)

Query  7    ETWIMHGTLLAWWWNQKIFPWDNDLDVQVTEPTIHFLAEYYN--------MTEHHFELPG  58
              W+  GTLL    +    PWD+D+D+Q+       LA+ +N        + E + +   
Sbjct  7    IYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGNKDDNY  66

Query  59   VDGGRNYLLEINPQYVVRTTEDAANVIDARWIDTSSGLFIDITAV---------------  103
               G   LL++N    VR   +  N          SGLFIDI  +               
Sbjct  67   FFPGA-KLLDVNTSITVRVNGNGKN---------DSGLFIDIFPLDSVPDSPEEIYKVKL  116

Query  104  ---------------------------------------------RKDDELRKKG-----  113
                                                         + +  L+KK      
Sbjct  117  KNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAEYDLS  176

Query  114  --QQGALMCKD----GHRFDETDIFPLRNSYFEDFPVKVPYKYTDLLVEEYG  159
              Q   L           F   +  PLR + FE     +P  Y   L  EYG
Sbjct  177  PSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEYG  228



Lambda      K        H        a         alpha
   0.320    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00000593

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  70.9    1e-15


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 70.9 bits (174),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 46/232 (20%), Positives = 67/232 (29%), Gaps = 89/232 (38%)

Query  7    ETWIMHGTLLAWWWNQKIFPWDNDLDVQVTEPTIHFLAEYYN--------MTEHHFELPG  58
              W+  GTLL    +    PWD+D+D+Q+       LA+ +N        + E + +   
Sbjct  7    IYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGNKDDNY  66

Query  59   VDGGRNYLLEINPQYVVRTTEDAANVIDARWIDTSSGLFIDITAV---------------  103
               G   LL++N    VR   +  N          SGLFIDI  +               
Sbjct  67   FFPGA-KLLDVNTSITVRVNGNGKN---------DSGLFIDIFPLDSVPDSPEEIYKVKL  116

Query  104  ---------------------------------------------RKDDELRKKG-----  113
                                                         + +  L+KK      
Sbjct  117  KNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAEYDLS  176

Query  114  --QQGALMCKD----GHRFDETDIFPLRNSYFEDFPVKVPYKYTDLLVEEYG  159
              Q   L           F   +  PLR + FE     +P  Y   L  EYG
Sbjct  177  PSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEYG  228



Lambda      K        H        a         alpha
   0.320    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00000594

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  67.1    6e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 67.1 bits (164),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 43/187 (23%), Positives = 72/187 (39%), Gaps = 13/187 (7%)

Query  2    FHKPTVRKLLTDAAQNPNFLDKNSEALVLSVYYVTIVSMSPEQCFSILGDDRDTAVTRYR  61
             H+P+  +   +   +P   +  S  L+L++  +  +        S      D A     
Sbjct  15   LHRPSFLRDYFELFSSP--SNYASPLLLLAILALGALFSESPTARS-SSSLTDEAADGIH  71

Query  62   FAVEQALSKAGLLNTQSLML--LQAAVLFLIGVRRE--DDTKFVWTMTAVVLRLAQGIGL  117
            F +   +      ++ S  L  LQA  L L+ +      D K  W    + +RLA+ +GL
Sbjct  72   FFLRALILIHEDFSSPSSSLWILQA--LLLLELYELGTGDRKLHWRYHGLAIRLARSLGL  129

Query  118  HRDGTNFGLK----PFETEMRRRLWWHICLLDIKSAEEHGTDAQIQDRMFDTRLPLNIND  173
            HRD +           E E+RRRL+W    LD   +   G    + D   D  LP + +D
Sbjct  130  HRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPCDDDD  189

Query  174  DDITLDM  180
               +   
Sbjct  190  LWESDSA  196



Lambda      K        H        a         alpha
   0.320    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00006698

Length=822
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  82.2    1e-17
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  61.9    5e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 82.2 bits (203),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 13/201 (6%)

Query  262  WDIYLDNVAPLIPMFHKPTVRKLLTDAAQNPNFLDKNSEALVLSVYYVTIVSMSPEQCFS  321
             D++  N  P  P+ H+P+  +   +   +P   +  S  L+L++  +  +        S
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSP--SNYASPLLLLAILALGALFSESPTARS  58

Query  322  ILGDDRDTAVTRYRFAVEQALSKAGLLNTQSLML--LQAAVLFLIGVRRE--DDTKFVWT  377
                  D A     F +   +      ++ S  L  LQA  L L+ +      D K  W 
Sbjct  59   -SSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQA--LLLLELYELGTGDRKLHWR  115

Query  378  MTAVVLRLAQGIGLHRDGTNFGLK----PFETEMRRRLWWHICLLDIKSAEEHGTDAQIQ  433
               + +RLA+ +GLHRD +           E E+RRRL+W    LD   +   G    + 
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  434  DRMFDTRLPLNINDDDITLDM  454
            D   D  LP + +D   +   
Sbjct  176  DSDIDLPLPCDDDDLWESDSA  196


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 61.9 bits (151),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 15/35 (43%), Positives = 23/35 (66%), Gaps = 1/35 (3%)

Query  52  RSCVTCRRRKVRCNKRTP-CSNCVKAGIECVFPPP  85
            +C  CR+RKV+C+ + P CS C+K G+EC +   
Sbjct  1   TACDNCRKRKVKCDGKKPACSRCIKNGLECTYSRK  35



Lambda      K        H        a         alpha
   0.318    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1043618678


Query= TCONS_00000596

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460448 pfam02109, DAD, DAD family. Members of this family are...  157     1e-50


>CDD:460448 pfam02109, DAD, DAD family.  Members of this family are thought 
to be integral membrane proteins. Some members of this family 
have been shown to cause apoptosis if mutated, these proteins 
are known as DAD for defender against death. The family 
also includes the epsilon subunit of the oligosaccharyltransferase 
that is involved in N-linked glycosylation.
Length=108

 Score = 157 bits (399),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 61/127 (48%), Positives = 80/127 (63%), Gaps = 21/127 (17%)

Query  63   IAHHVWQQYLTTTPQRTMMLDAFMVFLLFVGAVQFLYCVLAGNYPFNAFLSGFCAAVGQF  122
            I   +W+ Y   TPQR  ++DAF++FL+  G +QF+YC+L G +PFNAFLSGF + VGQF
Sbjct  3    ILSTLWKSYSKQTPQRLKLIDAFLLFLVLTGILQFVYCLLVGTFPFNAFLSGFISCVGQF  62

Query  123  VLTASLRMQTSSELKGVNSKPSSKGKNARFAAVEGGEQQGAVSHERAFADYIFGSLILHF  182
            VLT SLR+Q + E     +K   KG                +S ERAFAD++F SL+LHF
Sbjct  63   VLTVSLRLQLNPE-----NKSEFKG----------------ISPERAFADFVFASLVLHF  101

Query  183  FCINFIN  189
            F INFI 
Sbjct  102  FVINFIG  108



Lambda      K        H        a         alpha
   0.324    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00000597

Length=803
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  101     5e-26
CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharid...  73.1    2e-16
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  70.7    2e-15


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 101 bits (253),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 45/105 (43%), Positives = 57/105 (54%), Gaps = 16/105 (15%)

Query  579  SLFELWSLGALDNLGDLTPLGRAMTPFPMDPPLAKLLITASEEYGCSEEMLTIVSMLSVP  638
            +L  L+ LGALD  G+LTPLGR M   P+DP LAK+L+ A+ E GC +E+LTIV+ LSV 
Sbjct  1    ALELLYYLGALDEDGELTPLGRKMAELPLDPRLAKMLL-AAAELGCLDEVLTIVAALSVR  59

Query  639  SVFYRP---KERQEESDAAREKFF------------VPESDHLTL  668
              F +P     R     A R +                E DHLTL
Sbjct  60   DPFVQPNFLDPRSAAKAARRRRRAADEKARAKFARLDLEGDHLTL  104


>CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding 
(OB)-fold.  This family is found towards the C-terminus of 
the DEAD-box helicases (pfam00270). In these helicases it 
is apparently always found in association with pfam04408. There 
do seem to be a couple of instances where it occurs by itself. 
The structure Structure 3i4u adopts an OB-fold. helicases 
(pfam00270). In these helicases it is apparently always 
found in association with pfam04408. This C-terminal domain 
of the yeast helicase contains an oligonucleotide/oligosaccharide-binding 
(OB)-fold which seems to be placed at the entrance 
of the putative nucleic acid cavity. It also constitutes 
the binding site for the G-patch-containing domain of Pfa1p. 
When found on DEAH/RHA helicases, this domain is central 
to the regulation of the helicase activity through its binding 
of both RNA and G-patch domain proteins.
Length=82

 Score = 73.1 bits (180),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 25/72 (35%), Positives = 41/72 (57%), Gaps = 2/72 (3%)

Query  726  IRKCICSGFYHQAAKVKGIG-EFINLRTSVSMQLHPTSALY-GLGYVPEYVVYHELILTS  783
            +R  + +G Y   A+    G  +  L  +  + +HP+S L+    + PE+VVY EL+ T+
Sbjct  1    LRAALAAGLYPNVARRDPKGKGYTTLSDNQRVFIHPSSVLFNEKTFPPEWVVYQELVETT  60

Query  784  KEYMSTVTAVDP  795
            K Y+ TVTA+ P
Sbjct  61   KVYIRTVTAISP  72


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 70.7 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 29/134 (22%), Positives = 59/134 (44%), Gaps = 27/134 (20%)

Query  384  VKQVLAIHVSQGPGDILVFMTGQEDIEVTCELIDERLKMLNDPPKLSILPIYSQMPAEQQ  443
            ++ +L +   +  G +L+F   ++ +E          ++L +   + +  ++  +  E++
Sbjct  3    LEALLELLKKERGGKVLIFSQTKKTLE---------AELLLEKEGIKVARLHGDLSQEER  53

Query  444  AKIFERAPPGVRKVIVATNIAETSLTVDGIMFVVDSGYSKLKVYNPRMGMDTLQITPISQ  503
             +I E    G   V+VAT++AE  L +  +  V++        +NP              
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLP----WNP--------------  95

Query  504  ANANQRSGRAGRTG  517
            A+  QR GRAGR G
Sbjct  96   ASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1031702768


Query= TCONS_00000598

Length=791
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  100     5e-26
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  71.1    2e-15
CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharid...  66.5    3e-14


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 100 bits (252),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 45/105 (43%), Positives = 57/105 (54%), Gaps = 16/105 (15%)

Query  579  SLFELWSLGALDNLGDLTPLGRAMTPFPMDPPLAKLLITASEEYGCSEEMLTIVSMLSVP  638
            +L  L+ LGALD  G+LTPLGR M   P+DP LAK+L+ A+ E GC +E+LTIV+ LSV 
Sbjct  1    ALELLYYLGALDEDGELTPLGRKMAELPLDPRLAKMLL-AAAELGCLDEVLTIVAALSVR  59

Query  639  SVFYRP---KERQEESDAAREKFF------------VPESDHLTL  668
              F +P     R     A R +                E DHLTL
Sbjct  60   DPFVQPNFLDPRSAAKAARRRRRAADEKARAKFARLDLEGDHLTL  104


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 71.1 bits (175),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 29/134 (22%), Positives = 59/134 (44%), Gaps = 27/134 (20%)

Query  384  VKQVLAIHVSQGPGDILVFMTGQEDIEVTCELIDERLKMLNDPPKLSILPIYSQMPAEQQ  443
            ++ +L +   +  G +L+F   ++ +E          ++L +   + +  ++  +  E++
Sbjct  3    LEALLELLKKERGGKVLIFSQTKKTLE---------AELLLEKEGIKVARLHGDLSQEER  53

Query  444  AKIFERAPPGVRKVIVATNIAETSLTVDGIMFVVDSGYSKLKVYNPRMGMDTLQITPISQ  503
             +I E    G   V+VAT++AE  L +  +  V++        +NP              
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLP----WNP--------------  95

Query  504  ANANQRSGRAGRTG  517
            A+  QR GRAGR G
Sbjct  96   ASYIQRIGRAGRAG  109


>CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding 
(OB)-fold.  This family is found towards the C-terminus of 
the DEAD-box helicases (pfam00270). In these helicases it 
is apparently always found in association with pfam04408. There 
do seem to be a couple of instances where it occurs by itself. 
The structure Structure 3i4u adopts an OB-fold. helicases 
(pfam00270). In these helicases it is apparently always 
found in association with pfam04408. This C-terminal domain 
of the yeast helicase contains an oligonucleotide/oligosaccharide-binding 
(OB)-fold which seems to be placed at the entrance 
of the putative nucleic acid cavity. It also constitutes 
the binding site for the G-patch-containing domain of Pfa1p. 
When found on DEAH/RHA helicases, this domain is central 
to the regulation of the helicase activity through its binding 
of both RNA and G-patch domain proteins.
Length=82

 Score = 66.5 bits (163),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 23/68 (34%), Positives = 38/68 (56%), Gaps = 2/68 (3%)

Query  726  IRKCICSGFYHQAAKVKGIG-EFINLRTSVSMQLHPTSALY-GLGYVPEYVVYHELILTS  783
            +R  + +G Y   A+    G  +  L  +  + +HP+S L+    + PE+VVY EL+ T+
Sbjct  1    LRAALAAGLYPNVARRDPKGKGYTTLSDNQRVFIHPSSVLFNEKTFPPEWVVYQELVETT  60

Query  784  KEYMSTVT  791
            K Y+ TVT
Sbjct  61   KVYIRTVT  68



Lambda      K        H        a         alpha
   0.318    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1014240944


Query= TCONS_00000599

Length=86
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460448 pfam02109, DAD, DAD family. Members of this family are...  66.0    2e-16


>CDD:460448 pfam02109, DAD, DAD family.  Members of this family are thought 
to be integral membrane proteins. Some members of this family 
have been shown to cause apoptosis if mutated, these proteins 
are known as DAD for defender against death. The family 
also includes the epsilon subunit of the oligosaccharyltransferase 
that is involved in N-linked glycosylation.
Length=108

 Score = 66.0 bits (162),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 0/44 (0%)

Query  30  IAHHVWQQYLTTTPQRTMMLDAFMVFLLFVGAVQFLYCVLAGNY  73
           I   +W+ Y   TPQR  ++DAF++FL+  G +QF+YC+L G +
Sbjct  3   ILSTLWKSYSKQTPQRLKLIDAFLLFLVLTGILQFVYCLLVGTF  46



Lambda      K        H        a         alpha
   0.323    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00000600

Length=166
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription f...  100     4e-29


>CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor (CBF/NF-Y) 
and archaeal histone.  This family includes archaebacterial 
histones and histone like transcription factors from 
eukaryotes.
Length=65

 Score = 100 bits (251),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 44/66 (67%), Gaps = 1/66 (2%)

Query  44   RWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKTVNGE  103
              LPIA V RIMK   P+  +I+++AKE + ECV EFI F+ SEA+E C +  RKT+N E
Sbjct  1    AELPIARVKRIMKSD-PDAGRISQDAKELIAECVEEFIEFVASEAAEICNKAGRKTINPE  59

Query  104  DILFAM  109
             I  A+
Sbjct  60   HIKQAV  65



Lambda      K        H        a         alpha
   0.306    0.123    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00000601

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription f...   99     5e-29


>CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor (CBF/NF-Y) 
and archaeal histone.  This family includes archaebacterial 
histones and histone like transcription factors from 
eukaryotes.
Length=65

 Score =  99 bits (250),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 44/66 (67%), Gaps = 1/66 (2%)

Query  44   RWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKTVNGE  103
              LPIA V RIMK   P+  +I+++AKE + ECV EFI F+ SEA+E C +  RKT+N E
Sbjct  1    AELPIARVKRIMKSD-PDAGRISQDAKELIAECVEEFIEFVASEAAEICNKAGRKTINPE  59

Query  104  DILFAM  109
             I  A+
Sbjct  60   HIKQAV  65



Lambda      K        H        a         alpha
   0.314    0.128    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00006699

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription f...  106     4e-31


>CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor (CBF/NF-Y) 
and archaeal histone.  This family includes archaebacterial 
histones and histone like transcription factors from 
eukaryotes.
Length=65

 Score = 106 bits (268),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 44/66 (67%), Gaps = 1/66 (2%)

Query  44   RWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKTVNGE  103
              LPIA V RIMK   P+  +I+++AKE + ECV EFI F+ SEA+E C +  RKT+N E
Sbjct  1    AELPIARVKRIMKSD-PDAGRISQDAKELIAECVEEFIEFVASEAAEICNKAGRKTINPE  59

Query  104  DILFAM  109
             I  A+
Sbjct  60   HIKQAV  65



Lambda      K        H        a         alpha
   0.305    0.125    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00000602

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription f...  92.3    2e-26


>CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor (CBF/NF-Y) 
and archaeal histone.  This family includes archaebacterial 
histones and histone like transcription factors from 
eukaryotes.
Length=65

 Score = 92.3 bits (230),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 44/66 (67%), Gaps = 1/66 (2%)

Query  44   RWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKTVNGE  103
              LPIA V RIMK   P+  +I+++AKE + ECV EFI F+ SEA+E C +  RKT+N E
Sbjct  1    AELPIARVKRIMKSD-PDAGRISQDAKELIAECVEEFIEFVASEAAEICNKAGRKTINPE  59

Query  104  DILFAM  109
             I  A+
Sbjct  60   HIKQAV  65



Lambda      K        H        a         alpha
   0.308    0.123    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00006701

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00006700

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00006702

Length=118
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396482 pfam01920, Prefoldin_2, Prefoldin subunit. This family...  70.7    8e-18


>CDD:396482 pfam01920, Prefoldin_2, Prefoldin subunit.  This family includes 
prefoldin subunits that are not detected by pfam02996.
Length=102

 Score = 70.7 bits (174),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 57/102 (56%), Gaps = 0/102 (0%)

Query  16   QLQYTNFKNTLTQMAQKIGDIEQEAEEHKLVIETLEPLPEDRKCFRMVNGVLVERTVKDV  75
              ++   +  L  +AQ+I  +E + +E +L +E LE L ED K ++++  VLV++  ++V
Sbjct  1    INKFQQLQQQLQLLAQQIKQLETQLKELELALEELELLDEDTKVYKLIGDVLVKQDKEEV  60

Query  76   LPALKTNSDGLKQVLDELVKQYQSKQSELDDWKEKNNIQVVQ  117
               L+   + L++ +  L KQ +  + EL++ KE+   +  Q
Sbjct  61   KEQLEERKETLEKEIKTLEKQLEKLEKELEELKEELYKKFGQ  102



Lambda      K        H        a         alpha
   0.310    0.128    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00000603

Length=141
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription f...  93.1    1e-26


>CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor (CBF/NF-Y) 
and archaeal histone.  This family includes archaebacterial 
histones and histone like transcription factors from 
eukaryotes.
Length=65

 Score = 93.1 bits (232),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 44/66 (67%), Gaps = 1/66 (2%)

Query  44   RWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKTVNGE  103
              LPIA V RIMK   P+  +I+++AKE + ECV EFI F+ SEA+E C +  RKT+N E
Sbjct  1    AELPIARVKRIMKSD-PDAGRISQDAKELIAECVEEFIEFVASEAAEICNKAGRKTINPE  59

Query  104  DILFAM  109
             I  A+
Sbjct  60   HIKQAV  65



Lambda      K        H        a         alpha
   0.308    0.123    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00006703

Length=118
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396482 pfam01920, Prefoldin_2, Prefoldin subunit. This family...  70.7    9e-18


>CDD:396482 pfam01920, Prefoldin_2, Prefoldin subunit.  This family includes 
prefoldin subunits that are not detected by pfam02996.
Length=102

 Score = 70.7 bits (174),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 56/102 (55%), Gaps = 0/102 (0%)

Query  16   QLQYTNFKNTLTQMAQKIGDIEQEAEEHKLVIETLEPLPEDRKCFRMVNGVLVERTVKDV  75
              ++   +  L  +AQ+I  +E + +E +L +E LE L ED K ++++  VLV++  ++V
Sbjct  1    INKFQQLQQQLQLLAQQIKQLETQLKELELALEELELLDEDTKVYKLIGDVLVKQDKEEV  60

Query  76   LPALKTNSDGLKQVLDELVKQYQSKQSELDDWKVKNNIQVVQ  117
               L+   + L++ +  L KQ +  + EL++ K +   +  Q
Sbjct  61   KEQLEERKETLEKEIKTLEKQLEKLEKELEELKEELYKKFGQ  102



Lambda      K        H        a         alpha
   0.311    0.128    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00006704

Length=118
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396482 pfam01920, Prefoldin_2, Prefoldin subunit. This family...  70.3    1e-17


>CDD:396482 pfam01920, Prefoldin_2, Prefoldin subunit.  This family includes 
prefoldin subunits that are not detected by pfam02996.
Length=102

 Score = 70.3 bits (173),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 55/102 (54%), Gaps = 0/102 (0%)

Query  16   QLQYTNFKNTLTQMAQKIGDIEQEAEEHKLVIETLEPLPEDRKCFRMVNGVLVERTVKDV  75
              ++   +  L  +AQ+I  +E + +E +L +E LE L ED K ++++  VLV++  ++V
Sbjct  1    INKFQQLQQQLQLLAQQIKQLETQLKELELALEELELLDEDTKVYKLIGDVLVKQDKEEV  60

Query  76   LPALKTNSDGLKQVLDELVKQYQSKQSELDDWKVRNNIQVVQ  117
               L+   + L++ +  L KQ +  + EL++ K     +  Q
Sbjct  61   KEQLEERKETLEKEIKTLEKQLEKLEKELEELKEELYKKFGQ  102



Lambda      K        H        a         alpha
   0.312    0.129    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00006705

Length=116
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396482 pfam01920, Prefoldin_2, Prefoldin subunit. This family...  69.6    2e-17


>CDD:396482 pfam01920, Prefoldin_2, Prefoldin subunit.  This family includes 
prefoldin subunits that are not detected by pfam02996.
Length=102

 Score = 69.6 bits (171),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 26/97 (27%), Positives = 54/97 (56%), Gaps = 0/97 (0%)

Query  16   QLQYTNFKNTLTQMAQKIGDIEQEAEEHKLVIETLEPLPEDRKCFRMVNGVLVERTVKDV  75
              ++   +  L  +AQ+I  +E + +E +L +E LE L ED K ++++  VLV++  ++V
Sbjct  1    INKFQQLQQQLQLLAQQIKQLETQLKELELALEELELLDEDTKVYKLIGDVLVKQDKEEV  60

Query  76   LPALKTNSDGLKQVLDELVKQYQSKQSELDDWKNNIQ  112
               L+   + L++ +  L KQ +  + EL++ K  + 
Sbjct  61   KEQLEERKETLEKEIKTLEKQLEKLEKELEELKEELY  97



Lambda      K        H        a         alpha
   0.311    0.128    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00006706

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription f...  92.7    1e-26


>CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor (CBF/NF-Y) 
and archaeal histone.  This family includes archaebacterial 
histones and histone like transcription factors from 
eukaryotes.
Length=65

 Score = 92.7 bits (231),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 44/66 (67%), Gaps = 1/66 (2%)

Query  44   RWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKTVNGE  103
              LPIA V RIMK   P+  +I+++AKE + ECV EFI F+ SEA+E C +  RKT+N E
Sbjct  1    AELPIARVKRIMKSD-PDAGRISQDAKELIAECVEEFIEFVASEAAEICNKAGRKTINPE  59

Query  104  DILFAM  109
             I  A+
Sbjct  60   HIKQAV  65



Lambda      K        H        a         alpha
   0.308    0.123    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00006707

Length=90
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396482 pfam01920, Prefoldin_2, Prefoldin subunit. This family...  67.2    8e-17


>CDD:396482 pfam01920, Prefoldin_2, Prefoldin subunit.  This family includes 
prefoldin subunits that are not detected by pfam02996.
Length=102

 Score = 67.2 bits (165),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 53/89 (60%), Gaps = 0/89 (0%)

Query  1    MAQKIGDIEQEAEEHKLVIETLEPLPEDRKCFRMVNGVLVERTVKDVLPALKTNSDGLKQ  60
            +AQ+I  +E + +E +L +E LE L ED K ++++  VLV++  ++V   L+   + L++
Sbjct  14   LAQQIKQLETQLKELELALEELELLDEDTKVYKLIGDVLVKQDKEEVKEQLEERKETLEK  73

Query  61   VLDELVKQYQSKQSELDDWKKKNNIQVVQ  89
             +  L KQ +  + EL++ K++   +  Q
Sbjct  74   EIKTLEKQLEKLEKELEELKEELYKKFGQ  102



Lambda      K        H        a         alpha
   0.312    0.131    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00006708

Length=141
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription f...  93.1    1e-26


>CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor (CBF/NF-Y) 
and archaeal histone.  This family includes archaebacterial 
histones and histone like transcription factors from 
eukaryotes.
Length=65

 Score = 93.1 bits (232),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 44/66 (67%), Gaps = 1/66 (2%)

Query  44   RWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKTVNGE  103
              LPIA V RIMK   P+  +I+++AKE + ECV EFI F+ SEA+E C +  RKT+N E
Sbjct  1    AELPIARVKRIMKSD-PDAGRISQDAKELIAECVEEFIEFVASEAAEICNKAGRKTINPE  59

Query  104  DILFAM  109
             I  A+
Sbjct  60   HIKQAV  65



Lambda      K        H        a         alpha
   0.308    0.123    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00000605

Length=327


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00000604

Length=327


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0821    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00000607

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  90.2    1e-22


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 90.2 bits (224),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 74/173 (43%), Gaps = 18/173 (10%)

Query  52   VQAYFTHVNPGYPIVEEDQFMSQYRNRD--PSDPPPILLLQAILLVGCHVTH--------  101
            +  +F + +P +PI+    F+  Y      PS+    LLL AIL +G   +         
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  102  PKEERDALKAIFFRRAKWLFDNRIERNRDTL--VQAALLLTWHSDSPDDDVSANAHYWVG  159
               +  A    FF RA  L          +L  +QA LLL  +     D        + G
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGD--RKLHWRYHG  118

Query  160  VAARIATGLGMHRNPVSSRFAPR----DRRMWRRLWYILVQLDVMVSLSYGRP  208
            +A R+A  LG+HR+P     + +    +  + RRL++    LD ++SL  GRP
Sbjct  119  LAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRP  171



Lambda      K        H        a         alpha
   0.324    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00000606

Length=372


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 446726320


Query= TCONS_00000608

Length=141
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription f...  93.1    1e-26


>CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor (CBF/NF-Y) 
and archaeal histone.  This family includes archaebacterial 
histones and histone like transcription factors from 
eukaryotes.
Length=65

 Score = 93.1 bits (232),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 44/66 (67%), Gaps = 1/66 (2%)

Query  44   RWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKTVNGE  103
              LPIA V RIMK   P+  +I+++AKE + ECV EFI F+ SEA+E C +  RKT+N E
Sbjct  1    AELPIARVKRIMKSD-PDAGRISQDAKELIAECVEEFIEFVASEAAEICNKAGRKTINPE  59

Query  104  DILFAM  109
             I  A+
Sbjct  60   HIKQAV  65



Lambda      K        H        a         alpha
   0.308    0.123    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00000609

Length=144
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription f...  93.8    6e-27


>CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor (CBF/NF-Y) 
and archaeal histone.  This family includes archaebacterial 
histones and histone like transcription factors from 
eukaryotes.
Length=65

 Score = 93.8 bits (234),  Expect = 6e-27, Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 44/66 (67%), Gaps = 1/66 (2%)

Query  44   RWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKTVNGE  103
              LPIA V RIMK   P+  +I+++AKE + ECV EFI F+ SEA+E C +  RKT+N E
Sbjct  1    AELPIARVKRIMKSD-PDAGRISQDAKELIAECVEEFIEFVASEAAEICNKAGRKTINPE  59

Query  104  DILFAM  109
             I  A+
Sbjct  60   HIKQAV  65



Lambda      K        H        a         alpha
   0.307    0.122    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00006709

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription f...  106     4e-31


>CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor (CBF/NF-Y) 
and archaeal histone.  This family includes archaebacterial 
histones and histone like transcription factors from 
eukaryotes.
Length=65

 Score = 106 bits (268),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 44/66 (67%), Gaps = 1/66 (2%)

Query  44   RWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKTVNGE  103
              LPIA V RIMK   P+  +I+++AKE + ECV EFI F+ SEA+E C +  RKT+N E
Sbjct  1    AELPIARVKRIMKSD-PDAGRISQDAKELIAECVEEFIEFVASEAAEICNKAGRKTINPE  59

Query  104  DILFAM  109
             I  A+
Sbjct  60   HIKQAV  65



Lambda      K        H        a         alpha
   0.305    0.125    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00000610

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription f...  98.8    6e-28


>CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor (CBF/NF-Y) 
and archaeal histone.  This family includes archaebacterial 
histones and histone like transcription factors from 
eukaryotes.
Length=65

 Score = 98.8 bits (247),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 44/75 (59%), Gaps = 10/75 (13%)

Query  44   RWLPIANATCANIYRQVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQ  103
              LPIA          V RIMK   P+  +I+++AKE + ECV EFI F+ SEA+E C +
Sbjct  1    AELPIAR---------VKRIMKSD-PDAGRISQDAKELIAECVEEFIEFVASEAAEICNK  50

Query  104  EKRKTVNGEDILFAM  118
              RKT+N E I  A+
Sbjct  51   AGRKTINPEHIKQAV  65



Lambda      K        H        a         alpha
   0.306    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00006710

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  89.5    1e-20


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 89.5 bits (222),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 51/226 (23%), Positives = 88/226 (39%), Gaps = 35/226 (15%)

Query  113  HLVMLHGYGAGLGFFYKNFEPLSRLKGWQLHALDMLGMGRSTRPPFRIKAKNREDAIKEA  172
             +++LHG       + K    L+R  G+++ ALD+ G G+S+RP  +     R D + E 
Sbjct  2    PVLLLHGLPGSSDLWRKLAPALAR-DGFRVIALDLRGFGKSSRPKAQ--DDYRTDDLAED  58

Query  173  EDWFVDALEEWRVKRKIERFTLLGHSMGGYMGVAYALKYPGRLNKLILASPVGIPEDPYA  232
             ++ ++AL        +E+  L+GHSMGG + +AYA KYP R+  L+L            
Sbjct  59   LEYILEAL-------GLEKVNLVGHSMGGLIALAYAAKYPDRVKALVL------------  99

Query  233  VSADMPEPSESTLAQEFTQDQQTIAQSSLSVPPEVAQKGDNNVLLKGYGNAAAPPESR-P  291
            + A  P         E  +  + I                 N L +      A    R  
Sbjct  100  LGALDP-------PHELDEADRFILALFPGFFDGFVADFAPNPLGRLVAKLLALLLLRLR  152

Query  292  ARRSIPKWFAYLWEANISPF-SLVRWAGPLGPRIVSGWTSRRFSHL  336
              +++P         + +   SLV  A       +  W++   +  
Sbjct  153  LLKALPLLNKRFPSGDYALAKSLVTGALLF----IETWSTELRAKF  194



Lambda      K        H        a         alpha
   0.315    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00000611

Length=670
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459830 pfam00493, MCM, MCM2/3/5 family                            386     3e-132
CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain. This entry rep...  103     3e-27 


>CDD:459830 pfam00493, MCM, MCM2/3/5 family.  
Length=224

 Score = 386 bits (994),  Expect = 3e-132, Method: Composition-based stats.
 Identities = 135/224 (60%), Positives = 177/224 (79%), Gaps = 0/224 (0%)

Query  82   DIRNINKVAKKKNVFELLANSLAPSIYGHDYIKKAILLMLLGGMEKNLDNGTHLRGDINI  141
            D   I ++AK+ ++++ LA+S+APSIYGH+ +KKAILL L GG++K L +GT LRGDIN+
Sbjct  1    DEEEIKELAKRPDIYDKLADSIAPSIYGHEDVKKAILLQLFGGVKKILPDGTRLRGDINV  60

Query  142  LMVGDPSTAKSQLLRFVLNTAPLAIATTGRGSSGVGLTAAVTSDKETGERRLEAGAMVLG  201
            L+VGDP TAKSQLL++V   AP A+ T+G+GSS  GLTAAV  D  TGE  LEAGA+VL 
Sbjct  61   LLVGDPGTAKSQLLKYVEKIAPRAVYTSGKGSSAAGLTAAVVRDPVTGEFVLEAGALVLA  120

Query  202  DRGVVCIDEFDKMSDVDRVAIHEVMEQQTVTIAKAGIHTSLNARCSVLAAANPIYGQYDP  261
            D GV CIDEFDKM+D DRVA+HE MEQQT++IAKAGI  +LNARCS+LAAANPI+G+YDP
Sbjct  121  DGGVCCIDEFDKMNDEDRVALHEAMEQQTISIAKAGIVATLNARCSILAAANPIFGRYDP  180

Query  262  HKDPHKNIALPDSLLSRFDLLFVVTDDIEDARDRMVSEHVLRMH  305
             K   +NI LP  LLSRFDL+FV+ D  ++ +D  +++H++ +H
Sbjct  181  KKSIAENINLPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH  224


>CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain.  This entry represents 
the AAA-lid domain found in MCM proteins.
Length=86

 Score = 103 bits (260),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 37/87 (43%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query  371  FIKKYIQYSKSRIKPVLTKGAADHIVATYSALRNDELSGNQRRTSPITARTLETLIRLST  430
             ++KYI Y++ +IKP L++ A + +V  Y  LR +  S     + PIT R LE+LIRLS 
Sbjct  2    LLRKYIAYAREKIKPKLSEEAREKLVDAYVELRKE--STGSGSSIPITVRQLESLIRLSE  59

Query  431  AHAKARLSNRVEERDAKVAESILRFAM  457
            AHAK RLS  V E D + A  +L+ ++
Sbjct  60   AHAKMRLSEIVTEEDVEEAIRLLKESL  86



Lambda      K        H        a         alpha
   0.313    0.128    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 850953830


Query= TCONS_00000613

Length=611
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465323 pfam16969, SRP68, RNA-binding signal recognition parti...  724     0.0  


>CDD:465323 pfam16969, SRP68, RNA-binding signal recognition particle 68. 
 SRP68 is a family that is part of the SRP or signal recognition 
particle complex. This complex, consisting of six proteins 
and a 7SL-RNA is necessary for guiding the emerging proteins 
designed for the membrane towards the translocation pore. 
SRP68 forms a stable heterodimer with SRP72, a protein with 
a TPR repeat. Specific RNA-binding of SRP68 is mediated 
by the N-terminal domain of approximately 200 residues of this 
family.
Length=562

 Score = 724 bits (1870),  Expect = 0.0, Method: Composition-based stats.
 Identities = 301/583 (52%), Positives = 387/583 (66%), Gaps = 43/583 (7%)

Query  15   LLAGDYNAYRAHTTRRLHKLRKKLGQTTPKGRKYTAKPPVSAEDISNNVAYVHVLLLSSE  74
            L  GDY  YR + TRRL +LRKKL  TT K  KY  K  V+AED++ +V Y+H+LLL++E
Sbjct  1    LRHGDYQRYRQYCTRRLRRLRKKLKFTTGKRGKYVKKA-VTAEDVATDVRYLHLLLLTAE  59

Query  75   RAWAQAMHMKSTHSADPSAKGIAGSAKRHIMSRLNKASGYSQQLVLLLEDQATSGASDTD  134
            RAWA AM +K+ HSAD   KGI G  + HI+SRL KA+ +++QLV LL DQA SGA    
Sbjct  60   RAWAYAMELKAEHSAD--GKGITGRKRSHIISRLRKAAKWAEQLVELLSDQA-SGADART  116

Query  135  ILEAHAYLASLLGALYLEKRKWEQCIQSYAVSRIIYTTLGREDRKDVFRDLLTGTID---  191
            ILEA AY A L GAL  EK+ WE  ++SY+ +R+IY+ L +  + D F+DLL+ T+D   
Sbjct  117  ILEARAYAAWLRGALLFEKQNWEPALESYSKARVIYSALAKVGKDDEFKDLLSETVDELE  176

Query  192  PSIRYAAYQMKLPRSRPLSSLAIQYFP-SDANIRSKVERVDPDCLKENIAGTRKTADGEI  250
            PSIRY AYQ+KLPR+ P+ ++A + FP  D  + SK+E++DP+ LKE      + A    
Sbjct  177  PSIRYCAYQLKLPRTIPIPTIARKAFPGDDDLLVSKIEKLDPEALKE------QAASS--  228

Query  251  QQLPESITWRSRTVALEDATISQALASAAAAESRLKSWLADVEGESASSKDKAAAYDSVI  310
               P +ITWR RTV +EDA I QALA+   AE++L+  L+     SAS K+KAAAYD ++
Sbjct  229  TGAPTTITWRGRTVPIEDAKIRQALAAVQEAEAKLEEALS---ASSASPKEKAAAYDKIL  285

Query  311  IASQDAVDATKTAIDDLANEGVEPSDKRMQSLQITRTAVNYALVGWRIGRNRVLCGTNDG  370
            IASQDAVDATK AID+L  EGV+ SD RMQSLQI RTAVNY L+ WRIGRNRVL G  DG
Sbjct  286  IASQDAVDATKQAIDELLKEGVDQSDARMQSLQILRTAVNYELLSWRIGRNRVLIGEADG  345

Query  371  MIFETDKAECLKRGKGASREESTGKKLTRLREKVVLYDSILQSIEFILELPGVAADTTFV  430
             +FE    +  K+ K     + TG+KL RLRE V LYD++LQS+E I ELPGVAAD   V
Sbjct  346  ALFEESSDKSPKKKK-----KPTGRKLARLRELVRLYDALLQSLESIKELPGVAADEELV  400

Query  431  QELEAKRCYFRALRCLSIARSHCYLGNSKNALALYSQAMQLTAQSTVSDQSSQLSNEPLR  490
            +EL+AKR YFRALRCL IARSH   G    ALAL  +A++L A +     SS  +  P  
Sbjct  401  EELDAKRAYFRALRCLYIARSHALAGKYAEALALLKRALELAANALSKLSSSP-ATAPPN  459

Query  491  LDVSRSQVQTLGSILQGLVAQYRGLVTLEKMAAE----------------GPQTGNQRPV  534
            LDV    +Q L  +L+G + +YR LV L+ ++ E                     +Q+P+
Sbjct  460  LDVLSEDLQELADLLKGELQRYRALVELDNLSKENESLSKGLSSLSLGGSAANGTSQKPL  519

Query  535  IERLHEY--SGDKVDLSNLVPYPPQMQPIPVKPLFLDVAWNYI  575
            IERL EY  SG  VDL NLVPYPP+++P+PVKP+FLDVAWNYI
Sbjct  520  IERLDEYPSSGGVVDLKNLVPYPPKLEPVPVKPIFLDVAWNYI  562



Lambda      K        H        a         alpha
   0.315    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 775608132


Query= TCONS_00000614

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465323 pfam16969, SRP68, RNA-binding signal recognition parti...  614     0.0  


>CDD:465323 pfam16969, SRP68, RNA-binding signal recognition particle 68. 
 SRP68 is a family that is part of the SRP or signal recognition 
particle complex. This complex, consisting of six proteins 
and a 7SL-RNA is necessary for guiding the emerging proteins 
designed for the membrane towards the translocation pore. 
SRP68 forms a stable heterodimer with SRP72, a protein with 
a TPR repeat. Specific RNA-binding of SRP68 is mediated 
by the N-terminal domain of approximately 200 residues of this 
family.
Length=562

 Score = 614 bits (1586),  Expect = 0.0, Method: Composition-based stats.
 Identities = 264/517 (51%), Positives = 340/517 (66%), Gaps = 42/517 (8%)

Query  1    MHMKSTHSADPSAKGIAGSAKRHIMSRLNKASGYSQQLVLLLEDQATSGASDTDILEAHA  60
            M +K+ HSAD   KGI G  + HI+SRL KA+ +++QLV LL DQA SGA    ILEA A
Sbjct  66   MELKAEHSAD--GKGITGRKRSHIISRLRKAAKWAEQLVELLSDQA-SGADARTILEARA  122

Query  61   YLASLLGALYLEKRKWEQCIQSYAVSRIIYTTLGREDRKDVFRDLLTGTID---PSIRYA  117
            Y A L GAL  EK+ WE  ++SY+ +R+IY+ L +  + D F+DLL+ T+D   PSIRY 
Sbjct  123  YAAWLRGALLFEKQNWEPALESYSKARVIYSALAKVGKDDEFKDLLSETVDELEPSIRYC  182

Query  118  AYQMKLPRSRPLSSLAIQYFP-SDANIRSKVERVDPDCLKENIAGTRKTADGEIQQLPES  176
            AYQ+KLPR+ P+ ++A + FP  D  + SK+E++DP+ LKE      + A       P +
Sbjct  183  AYQLKLPRTIPIPTIARKAFPGDDDLLVSKIEKLDPEALKE------QAASS--TGAPTT  234

Query  177  ITWRSRTVALEDATISQALASAAAAESRLKSWLADVEGESASSKDKAAAYDSVIIASQDA  236
            ITWR RTV +EDA I QALA+   AE++L+  L+     SAS K+KAAAYD ++IASQDA
Sbjct  235  ITWRGRTVPIEDAKIRQALAAVQEAEAKLEEALS---ASSASPKEKAAAYDKILIASQDA  291

Query  237  VDATKTAIDDLANEGVEPSDKRMQSLQITRTAVNYALVGWRIGRNRVLCGTNDGMIFETD  296
            VDATK AID+L  EGV+ SD RMQSLQI RTAVNY L+ WRIGRNRVL G  DG +FE  
Sbjct  292  VDATKQAIDELLKEGVDQSDARMQSLQILRTAVNYELLSWRIGRNRVLIGEADGALFEES  351

Query  297  KAECLKRGKGASREESTGKKLTRLREKVVLYDSILQSIEFILELPGVAADTTFVQELEAK  356
              +  K+ K     + TG+KL RLRE V LYD++LQS+E I ELPGVAAD   V+EL+AK
Sbjct  352  SDKSPKKKK-----KPTGRKLARLRELVRLYDALLQSLESIKELPGVAADEELVEELDAK  406

Query  357  RCYFRALRCLSIARSHCYLGNSKNALALYSQAMQLTAQSTVSDQSSQLSNEPLRLDVSRS  416
            R YFRALRCL IARSH   G    ALAL  +A++L A +     SS  +  P  LDV   
Sbjct  407  RAYFRALRCLYIARSHALAGKYAEALALLKRALELAANALSKLSSSP-ATAPPNLDVLSE  465

Query  417  QVQTLGSILQGLVAQYRGLVTLEKMAAE----------------GPQTGNQRPVIERLHE  460
             +Q L  +L+G + +YR LV L+ ++ E                     +Q+P+IERL E
Sbjct  466  DLQELADLLKGELQRYRALVELDNLSKENESLSKGLSSLSLGGSAANGTSQKPLIERLDE  525

Query  461  Y--SGDKVDLSNLVPYPPQMQPIPVKPLFLDVAWNYI  495
            Y  SG  VDL NLVPYPP+++P+PVKP+FLDVAWNYI
Sbjct  526  YPSSGGVVDLKNLVPYPPKLEPVPVKPIFLDVAWNYI  562



Lambda      K        H        a         alpha
   0.315    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 666189040


Query= TCONS_00006711

Length=458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465323 pfam16969, SRP68, RNA-binding signal recognition parti...  564     0.0  


>CDD:465323 pfam16969, SRP68, RNA-binding signal recognition particle 68. 
 SRP68 is a family that is part of the SRP or signal recognition 
particle complex. This complex, consisting of six proteins 
and a 7SL-RNA is necessary for guiding the emerging proteins 
designed for the membrane towards the translocation pore. 
SRP68 forms a stable heterodimer with SRP72, a protein with 
a TPR repeat. Specific RNA-binding of SRP68 is mediated 
by the N-terminal domain of approximately 200 residues of this 
family.
Length=562

 Score = 564 bits (1456),  Expect = 0.0, Method: Composition-based stats.
 Identities = 236/434 (54%), Positives = 301/434 (69%), Gaps = 24/434 (6%)

Query  15   LLAGDYNAYRAHTTRRLHKLRKKLGQTTPKGRKYTAKPPVSAEDISNNVAYVHVLLLSSE  74
            L  GDY  YR + TRRL +LRKKL  TT K  KY  K  V+AED++ +V Y+H+LLL++E
Sbjct  1    LRHGDYQRYRQYCTRRLRRLRKKLKFTTGKRGKYVKKA-VTAEDVATDVRYLHLLLLTAE  59

Query  75   RAWAQAMHMKSTHSADPSAKGIAGSAKRHIMSRLNKASGYSQQLVLLLEDQATSGASDTD  134
            RAWA AM +K+ HSAD   KGI G  + HI+SRL KA+ +++QLV LL DQA SGA    
Sbjct  60   RAWAYAMELKAEHSAD--GKGITGRKRSHIISRLRKAAKWAEQLVELLSDQA-SGADART  116

Query  135  ILEAHAYLASLLGALYLEKRKWEQCIQSYAVSRIIYTTLGREDRKDVFRDLLTGTID---  191
            ILEA AY A L GAL  EK+ WE  ++SY+ +R+IY+ L +  + D F+DLL+ T+D   
Sbjct  117  ILEARAYAAWLRGALLFEKQNWEPALESYSKARVIYSALAKVGKDDEFKDLLSETVDELE  176

Query  192  PSIRYAAYQMKLPRSRPLSSLAIQYFP-SDANIRSKVERVDPDCLKENIAGTRKTADGEI  250
            PSIRY AYQ+KLPR+ P+ ++A + FP  D  + SK+E++DP+ LKE      + A    
Sbjct  177  PSIRYCAYQLKLPRTIPIPTIARKAFPGDDDLLVSKIEKLDPEALKE------QAASS--  228

Query  251  QQLPESITWRSRTVALEDATISQALASAAAAESRLKSWLADVEGESASSKDKAAAYDSVI  310
               P +ITWR RTV +EDA I QALA+   AE++L+  L+     SAS K+KAAAYD ++
Sbjct  229  TGAPTTITWRGRTVPIEDAKIRQALAAVQEAEAKLEEALS---ASSASPKEKAAAYDKIL  285

Query  311  IASQDAVDATKTAIDDLANEGVEPSDKRMQSLQITRTAVNYALVGWRIGRNRVLCGTNDG  370
            IASQDAVDATK AID+L  EGV+ SD RMQSLQI RTAVNY L+ WRIGRNRVL G  DG
Sbjct  286  IASQDAVDATKQAIDELLKEGVDQSDARMQSLQILRTAVNYELLSWRIGRNRVLIGEADG  345

Query  371  MIFETDKAECLKRGKGASREESTGKKLTRLREKVVLYDSILQSIEFILELPGVAADTTFV  430
             +FE    +  K+ K     + TG+KL RLRE V LYD++LQS+E I ELPGVAAD   V
Sbjct  346  ALFEESSDKSPKKKK-----KPTGRKLARLRELVRLYDALLQSLESIKELPGVAADEELV  400

Query  431  QELEAKRCYFRALR  444
            +EL+AKR YFRALR
Sbjct  401  EELDAKRAYFRALR  414



Lambda      K        H        a         alpha
   0.316    0.129    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 564403072


Query= TCONS_00000615

Length=646
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465323 pfam16969, SRP68, RNA-binding signal recognition parti...  727     0.0  


>CDD:465323 pfam16969, SRP68, RNA-binding signal recognition particle 68. 
 SRP68 is a family that is part of the SRP or signal recognition 
particle complex. This complex, consisting of six proteins 
and a 7SL-RNA is necessary for guiding the emerging proteins 
designed for the membrane towards the translocation pore. 
SRP68 forms a stable heterodimer with SRP72, a protein with 
a TPR repeat. Specific RNA-binding of SRP68 is mediated 
by the N-terminal domain of approximately 200 residues of this 
family.
Length=562

 Score = 727 bits (1880),  Expect = 0.0, Method: Composition-based stats.
 Identities = 301/583 (52%), Positives = 387/583 (66%), Gaps = 43/583 (7%)

Query  50   LLAGDYNAYRAHTTRRLHKLRKKLGQTTPKGRKYTAKPPVSAEDISNNVAYVHVLLLSSE  109
            L  GDY  YR + TRRL +LRKKL  TT K  KY  K  V+AED++ +V Y+H+LLL++E
Sbjct  1    LRHGDYQRYRQYCTRRLRRLRKKLKFTTGKRGKYVKKA-VTAEDVATDVRYLHLLLLTAE  59

Query  110  RAWAQAMHMKSTHSADPSAKGIAGSAKRHIMSRLNKASGYSQQLVLLLEDQATSGASDTD  169
            RAWA AM +K+ HSAD   KGI G  + HI+SRL KA+ +++QLV LL DQA SGA    
Sbjct  60   RAWAYAMELKAEHSAD--GKGITGRKRSHIISRLRKAAKWAEQLVELLSDQA-SGADART  116

Query  170  ILEAHAYLASLLGALYLEKRKWEQCIQSYAVSRIIYTTLGREDRKDVFRDLLTGTID---  226
            ILEA AY A L GAL  EK+ WE  ++SY+ +R+IY+ L +  + D F+DLL+ T+D   
Sbjct  117  ILEARAYAAWLRGALLFEKQNWEPALESYSKARVIYSALAKVGKDDEFKDLLSETVDELE  176

Query  227  PSIRYAAYQMKLPRSRPLSSLAIQYFP-SDANIRSKVERVDPDCLKENIAGTRKTADGEI  285
            PSIRY AYQ+KLPR+ P+ ++A + FP  D  + SK+E++DP+ LKE      + A    
Sbjct  177  PSIRYCAYQLKLPRTIPIPTIARKAFPGDDDLLVSKIEKLDPEALKE------QAASS--  228

Query  286  QQLPESITWRSRTVALEDATISQALASAAAAESRLKSWLADVEGESASSKDKAAAYDSVI  345
               P +ITWR RTV +EDA I QALA+   AE++L+  L+     SAS K+KAAAYD ++
Sbjct  229  TGAPTTITWRGRTVPIEDAKIRQALAAVQEAEAKLEEALS---ASSASPKEKAAAYDKIL  285

Query  346  IASQDAVDATKTAIDDLANEGVEPSDKRMQSLQITRTAVNYALVGWRIGRNRVLCGTNDG  405
            IASQDAVDATK AID+L  EGV+ SD RMQSLQI RTAVNY L+ WRIGRNRVL G  DG
Sbjct  286  IASQDAVDATKQAIDELLKEGVDQSDARMQSLQILRTAVNYELLSWRIGRNRVLIGEADG  345

Query  406  MIFETDKAECLKRGKGASREESTGKKLTRLREKVVLYDSILQSIEFILELPGVAADTTFV  465
             +FE    +  K+ K     + TG+KL RLRE V LYD++LQS+E I ELPGVAAD   V
Sbjct  346  ALFEESSDKSPKKKK-----KPTGRKLARLRELVRLYDALLQSLESIKELPGVAADEELV  400

Query  466  QELEAKRCYFRALRCLSIARSHCYLGNSKNALALYSQAMQLTAQSTVSDQSSQLSNEPLR  525
            +EL+AKR YFRALRCL IARSH   G    ALAL  +A++L A +     SS  +  P  
Sbjct  401  EELDAKRAYFRALRCLYIARSHALAGKYAEALALLKRALELAANALSKLSSSP-ATAPPN  459

Query  526  LDVSRSQVQTLGSILQGLVAQYRGLVTLEKMAAE----------------GPQTGNQRPV  569
            LDV    +Q L  +L+G + +YR LV L+ ++ E                     +Q+P+
Sbjct  460  LDVLSEDLQELADLLKGELQRYRALVELDNLSKENESLSKGLSSLSLGGSAANGTSQKPL  519

Query  570  IERLHEY--SGDKVDLSNLVPYPPQMQPIPVKPLFLDVAWNYI  610
            IERL EY  SG  VDL NLVPYPP+++P+PVKP+FLDVAWNYI
Sbjct  520  IERLDEYPSSGGVVDLKNLVPYPPKLEPVPVKPIFLDVAWNYI  562



Lambda      K        H        a         alpha
   0.315    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 815558870


Query= TCONS_00000616

Length=418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  160     5e-45


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 160 bits (407),  Expect = 5e-45, Method: Composition-based stats.
 Identities = 89/361 (25%), Positives = 152/361 (42%), Gaps = 44/361 (12%)

Query  30   VFLDGKEHVEFRKGLNGLFTRSALSSYLPVMEECYNKYYKYFLEKSKANDY-KPEPWMPE  88
            VF +G    + R+ L   FT     S+ P +EE      +   + +           +  
Sbjct  88   VFANGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLL--  145

Query  89   FRELMCAVSCRTFVGH----------YMTDAAIKKIADDYYMITAALELVNFPFILPFTK  138
                   V C    G                A+++++    + + + +L++   IL +  
Sbjct  146  -FRAALNVICSILFGERFGSLEDPKFLELVKAVQELSSL--LSSPSPQLLDLFPILKYFP  202

Query  139  AWYGKKASDMVLEEFSNCAAKSKAHMAAGGEITCIMDAWVKAQQDSAKYNEKIAK-GLPV  197
              +G+K                     A  +I  ++D  ++ ++++    +K  +  L  
Sbjct  203  GPHGRK------------------LKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDA  244

Query  198  EDSEKPSHLLREFTDYEIAQTVFTLLFASQDATSAACTWLFQLVADRPDVLEKIREENLR  257
                K      + TD E+  TV  L FA  D TS+  +W    +A  P+V EK+REE   
Sbjct  245  LLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDE  304

Query  258  VRNGNINAPLTMDLLDEMKYTRAVVRETLRYRPPVIM-VPYLVKKDFPITDSITVSKGSM  316
            V         T D L  M Y  AV++ETLR  P V + +P  V KD  I     + KG++
Sbjct  305  VIGD--KRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVI-PGYLIPKGTL  361

Query  317  IIPSVWPATHDPEAYPNPDSFDPDRWITGDAEKQAKN---FLVFGTGPHYCLGQTYAQLN  373
            +I +++    DPE +PNP+ FDP+R++  D   + +    FL FG GP  CLG+  A++ 
Sbjct  362  VIVNLYALHRDPEVFPNPEEFDPERFL--DENGKFRKSFAFLPFGAGPRNCLGERLARME  419

Query  374  L  374
            +
Sbjct  420  M  420



Lambda      K        H        a         alpha
   0.321    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00000617

Length=521
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  165     4e-46


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 165 bits (421),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 105/450 (23%), Positives = 181/450 (40%), Gaps = 59/450 (13%)

Query  65   GPTFKLPFMGPFLQSVNPK-----FHEYKAKWDSGELSCVSVFHKFVVIASTRDMSRKIF  119
            GP   LP  G  LQ          F + + K+  G +  + +  K VV+ S  +  +++ 
Sbjct  3    GPPP-LPLFGNLLQLGRKGNLHSVFTKLQKKY--GPIFRLYLGPKPVVVLSGPEAVKEVL  59

Query  120  N------SPAYVKPCVVDIAHKLLGPDNWVFLDGKEHVEFRKGLNGLFTRSALSSYLPVM  173
                   S    +P     +         VF +G    + R+ L   FT     S+ P +
Sbjct  60   IKKGEEFSGRPDEP-WFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGKLSFEPRV  118

Query  174  EECYNKYYKYFLEKSKANDY-KPEPWMPEFRELMCAVSCRTFVGH----------YMTDA  222
            EE      +   + +           +         V C    G                
Sbjct  119  EEEARDLVEKLRKTAGEPGVIDITDLL---FRAALNVICSILFGERFGSLEDPKFLELVK  175

Query  223  AIKKIADDYYMITAALELVNFPFILPFTKAWYGKKASDMVLEEFSNCAAKSKAHMAAGGE  282
            A+++++    + + + +L++   IL +    +G+K                     A  +
Sbjct  176  AVQELSSL--LSSPSPQLLDLFPILKYFPGPHGRK------------------LKRARKK  215

Query  283  ITCIMDAWVKAQQDSAKYNEKIAK-GLPVEDSEKPSHLLREFTDYEIAQTVFTLLFASQD  341
            I  ++D  ++ ++++    +K  +  L      K      + TD E+  TV  L FA  D
Sbjct  216  IKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTD  275

Query  342  ATSAACTWLFQLVADRPDVLEKIREENLRVRNGNINAPLTMDLLDEMKYTRAVVRETLRY  401
             TS+  +W    +A  P+V EK+REE   V         T D L  M Y  AV++ETLR 
Sbjct  276  TTSSTLSWALYELAKHPEVQEKLREEIDEVIGD--KRSPTYDDLQNMPYLDAVIKETLRL  333

Query  402  RPPVIM-VPYLVKKDFPITDSITVSKGSMIIPSVWPATHDPEAYPNPDSFDPDRWITGDA  460
             P V + +P  V KD  I     + KG+++I +++    DPE +PNP+ FDP+R++  D 
Sbjct  334  HPVVPLLLPREVTKDTVI-PGYLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERFL--DE  390

Query  461  EKQAKN---FLVFGTGPHYCLGQTYAQLNL  487
              + +    FL FG GP  CLG+  A++ +
Sbjct  391  NGKFRKSFAFLPFGAGPRNCLGERLARMEM  420



Lambda      K        H        a         alpha
   0.321    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 651048380


Query= TCONS_00006712

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  160     3e-45


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 160 bits (408),  Expect = 3e-45, Method: Composition-based stats.
 Identities = 89/361 (25%), Positives = 152/361 (42%), Gaps = 44/361 (12%)

Query  30   VFLDGKEHVEFRKGLNGLFTRSALSSYLPVMEECYNKYYKYFLEKSKANDY-KPEPWMPE  88
            VF +G    + R+ L   FT     S+ P +EE      +   + +           +  
Sbjct  88   VFANGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLL--  145

Query  89   FRELMCAVSCRTFVGH----------YMTDAAIKKIADDYYMITAALELVNFPFILPFTK  138
                   V C    G                A+++++    + + + +L++   IL +  
Sbjct  146  -FRAALNVICSILFGERFGSLEDPKFLELVKAVQELSSL--LSSPSPQLLDLFPILKYFP  202

Query  139  AWYGKKASDMVLEEFSNCAAKSKAHMAAGGEITCIMDAWVKAQQDSAKYNEKIAK-GLPV  197
              +G+K                     A  +I  ++D  ++ ++++    +K  +  L  
Sbjct  203  GPHGRK------------------LKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDA  244

Query  198  EDSEKPSHLLREFTDYEIAQTVFTLLFASQDATSAACTWLFQLVADRPDVLEKIREENLR  257
                K      + TD E+  TV  L FA  D TS+  +W    +A  P+V EK+REE   
Sbjct  245  LLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDE  304

Query  258  VRNGNINAPLTMDLLDEMKYTRAVVRETLRYRPPVIM-VPYLVKKDFPITDSITVSKGSM  316
            V         T D L  M Y  AV++ETLR  P V + +P  V KD  I     + KG++
Sbjct  305  VIGD--KRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVI-PGYLIPKGTL  361

Query  317  IIPSVWPATHDPEAYPNPDSFDPDRWITGDAEKQAKN---FLVFGTGPHYCLGQTYAQLN  373
            +I +++    DPE +PNP+ FDP+R++  D   + +    FL FG GP  CLG+  A++ 
Sbjct  362  VIVNLYALHRDPEVFPNPEEFDPERFL--DENGKFRKSFAFLPFGAGPRNCLGERLARME  419

Query  374  L  374
            +
Sbjct  420  M  420



Lambda      K        H        a         alpha
   0.320    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00006713

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  160     3e-45


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 160 bits (408),  Expect = 3e-45, Method: Composition-based stats.
 Identities = 89/361 (25%), Positives = 152/361 (42%), Gaps = 44/361 (12%)

Query  30   VFLDGKEHVEFRKGLNGLFTRSALSSYLPVMEECYNKYYKYFLEKSKANDY-KPEPWMPE  88
            VF +G    + R+ L   FT     S+ P +EE      +   + +           +  
Sbjct  88   VFANGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLL--  145

Query  89   FRELMCAVSCRTFVGH----------YMTDAAIKKIADDYYMITAALELVNFPFILPFTK  138
                   V C    G                A+++++    + + + +L++   IL +  
Sbjct  146  -FRAALNVICSILFGERFGSLEDPKFLELVKAVQELSSL--LSSPSPQLLDLFPILKYFP  202

Query  139  AWYGKKASDMVLEEFSNCAAKSKAHMAAGGEITCIMDAWVKAQQDSAKYNEKIAK-GLPV  197
              +G+K                     A  +I  ++D  ++ ++++    +K  +  L  
Sbjct  203  GPHGRK------------------LKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDA  244

Query  198  EDSEKPSHLLREFTDYEIAQTVFTLLFASQDATSAACTWLFQLVADRPDVLEKIREENLR  257
                K      + TD E+  TV  L FA  D TS+  +W    +A  P+V EK+REE   
Sbjct  245  LLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDE  304

Query  258  VRNGNINAPLTMDLLDEMKYTRAVVRETLRYRPPVIM-VPYLVKKDFPITDSITVSKGSM  316
            V         T D L  M Y  AV++ETLR  P V + +P  V KD  I     + KG++
Sbjct  305  VIGD--KRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVI-PGYLIPKGTL  361

Query  317  IIPSVWPATHDPEAYPNPDSFDPDRWITGDAEKQAKN---FLVFGTGPHYCLGQTYAQLN  373
            +I +++    DPE +PNP+ FDP+R++  D   + +    FL FG GP  CLG+  A++ 
Sbjct  362  VIVNLYALHRDPEVFPNPEEFDPERFL--DENGKFRKSFAFLPFGAGPRNCLGERLARME  419

Query  374  L  374
            +
Sbjct  420  M  420



Lambda      K        H        a         alpha
   0.320    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00000618

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  165     6e-46


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 165 bits (420),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 105/450 (23%), Positives = 181/450 (40%), Gaps = 59/450 (13%)

Query  65   GPTFKLPFMGPFLQSVNPK-----FHEYKAKWDSGELSCVSVFHKFVVIASTRDMSRKIF  119
            GP   LP  G  LQ          F + + K+  G +  + +  K VV+ S  +  +++ 
Sbjct  3    GPPP-LPLFGNLLQLGRKGNLHSVFTKLQKKY--GPIFRLYLGPKPVVVLSGPEAVKEVL  59

Query  120  N------SPAYVKPCVVDIAHKLLGPDNWVFLDGKEHVEFRKGLNGLFTRSALSSYLPVM  173
                   S    +P     +         VF +G    + R+ L   FT     S+ P +
Sbjct  60   IKKGEEFSGRPDEP-WFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGKLSFEPRV  118

Query  174  EECYNKYYKYFLEKSKANDY-KPEPWMPEFRELMCAVSCRTFVGH----------YMTDA  222
            EE      +   + +           +         V C    G                
Sbjct  119  EEEARDLVEKLRKTAGEPGVIDITDLL---FRAALNVICSILFGERFGSLEDPKFLELVK  175

Query  223  AIKKIADDYYMITAALELVNFPFILPFTKAWYGKKASDMVLEEFSNCAAKSKAHMAAGGE  282
            A+++++    + + + +L++   IL +    +G+K                     A  +
Sbjct  176  AVQELSSL--LSSPSPQLLDLFPILKYFPGPHGRK------------------LKRARKK  215

Query  283  ITCIMDAWVKAQQDSAKYNEKIAK-GLPVEDSEKPSHLLREFTDYEIAQTVFTLLFASQD  341
            I  ++D  ++ ++++    +K  +  L      K      + TD E+  TV  L FA  D
Sbjct  216  IKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTD  275

Query  342  ATSAACTWLFQLVADRPDVLEKIREENLRVRNGNINAPLTMDLLDEMKYTRAVVRETLRY  401
             TS+  +W    +A  P+V EK+REE   V         T D L  M Y  AV++ETLR 
Sbjct  276  TTSSTLSWALYELAKHPEVQEKLREEIDEVIGD--KRSPTYDDLQNMPYLDAVIKETLRL  333

Query  402  RPPVIM-VPYLVKKDFPITDSITVSKGSMIIPSVWPATHDPEAYPNPDSFDPDRWITGDA  460
             P V + +P  V KD  I     + KG+++I +++    DPE +PNP+ FDP+R++  D 
Sbjct  334  HPVVPLLLPREVTKDTVI-PGYLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERFL--DE  390

Query  461  EKQAKN---FLVFGTGPHYCLGQTYAQLNL  487
              + +    FL FG GP  CLG+  A++ +
Sbjct  391  NGKFRKSFAFLPFGAGPRNCLGERLARMEM  420



Lambda      K        H        a         alpha
   0.322    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 666189040


Query= TCONS_00006714

Length=289
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  154     3e-44


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 154 bits (391),  Expect = 3e-44, Method: Composition-based stats.
 Identities = 63/171 (37%), Positives = 92/171 (54%), Gaps = 9/171 (5%)

Query  89   REFTDYEIAQTVFTLLFASQDATSAACTWLFQLVADRPDVLEKIREENLRVRNGNINAPL  148
             + TD E+  TV  L FA  D TS+  +W    +A  P+V EK+REE   V         
Sbjct  255  SKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGD--KRSP  312

Query  149  TMDLLDEMKYTRAVVRETLRYRPPVIM-VPYLVKKDFPITDSITVSKGSMIIPSVWPATH  207
            T D L  M Y  AV++ETLR  P V + +P  V KD  I     + KG+++I +++    
Sbjct  313  TYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVI-PGYLIPKGTLVIVNLYALHR  371

Query  208  DPEAYPNPDSFDPDRWITGDAEKQAKN---FLVFGTGPHYCLGQTYAQLNL  255
            DPE +PNP+ FDP+R++  D   + +    FL FG GP  CLG+  A++ +
Sbjct  372  DPEVFPNPEEFDPERFL--DENGKFRKSFAFLPFGAGPRNCLGERLARMEM  420



Lambda      K        H        a         alpha
   0.319    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 327287968


Query= TCONS_00006715

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00000619

Length=521
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  165     4e-46


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 165 bits (421),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 105/450 (23%), Positives = 181/450 (40%), Gaps = 59/450 (13%)

Query  65   GPTFKLPFMGPFLQSVNPK-----FHEYKAKWDSGELSCVSVFHKFVVIASTRDMSRKIF  119
            GP   LP  G  LQ          F + + K+  G +  + +  K VV+ S  +  +++ 
Sbjct  3    GPPP-LPLFGNLLQLGRKGNLHSVFTKLQKKY--GPIFRLYLGPKPVVVLSGPEAVKEVL  59

Query  120  N------SPAYVKPCVVDIAHKLLGPDNWVFLDGKEHVEFRKGLNGLFTRSALSSYLPVM  173
                   S    +P     +         VF +G    + R+ L   FT     S+ P +
Sbjct  60   IKKGEEFSGRPDEP-WFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGKLSFEPRV  118

Query  174  EECYNKYYKYFLEKSKANDY-KPEPWMPEFRELMCAVSCRTFVGH----------YMTDA  222
            EE      +   + +           +         V C    G                
Sbjct  119  EEEARDLVEKLRKTAGEPGVIDITDLL---FRAALNVICSILFGERFGSLEDPKFLELVK  175

Query  223  AIKKIADDYYMITAALELVNFPFILPFTKAWYGKKASDMVLEEFSNCAAKSKAHMAAGGE  282
            A+++++    + + + +L++   IL +    +G+K                     A  +
Sbjct  176  AVQELSSL--LSSPSPQLLDLFPILKYFPGPHGRK------------------LKRARKK  215

Query  283  ITCIMDAWVKAQQDSAKYNEKIAK-GLPVEDSEKPSHLLREFTDYEIAQTVFTLLFASQD  341
            I  ++D  ++ ++++    +K  +  L      K      + TD E+  TV  L FA  D
Sbjct  216  IKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTD  275

Query  342  ATSAACTWLFQLVADRPDVLEKIREENLRVRNGNINAPLTMDLLDEMKYTRAVVRETLRY  401
             TS+  +W    +A  P+V EK+REE   V         T D L  M Y  AV++ETLR 
Sbjct  276  TTSSTLSWALYELAKHPEVQEKLREEIDEVIGD--KRSPTYDDLQNMPYLDAVIKETLRL  333

Query  402  RPPVIM-VPYLVKKDFPITDSITVSKGSMIIPSVWPATHDPEAYPNPDSFDPDRWITGDA  460
             P V + +P  V KD  I     + KG+++I +++    DPE +PNP+ FDP+R++  D 
Sbjct  334  HPVVPLLLPREVTKDTVI-PGYLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERFL--DE  390

Query  461  EKQAKN---FLVFGTGPHYCLGQTYAQLNL  487
              + +    FL FG GP  CLG+  A++ +
Sbjct  391  NGKFRKSFAFLPFGAGPRNCLGERLARMEM  420



Lambda      K        H        a         alpha
   0.321    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 651048380


Query= TCONS_00006716

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  164     6e-46


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 164 bits (417),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 105/450 (23%), Positives = 181/450 (40%), Gaps = 59/450 (13%)

Query  14   GPTFKLPFMGPFLQSVNPK-----FHEYKAKWDSGELSCVSVFHKFVVIASTRDMSRKIF  68
            GP   LP  G  LQ          F + + K+  G +  + +  K VV+ S  +  +++ 
Sbjct  3    GPPP-LPLFGNLLQLGRKGNLHSVFTKLQKKY--GPIFRLYLGPKPVVVLSGPEAVKEVL  59

Query  69   N------SPAYVKPCVVDIAHKLLGPDNWVFLDGKEHVEFRKGLNGLFTRSALSSYLPVM  122
                   S    +P     +         VF +G    + R+ L   FT     S+ P +
Sbjct  60   IKKGEEFSGRPDEP-WFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGKLSFEPRV  118

Query  123  EECYNKYYKYFLEKSKANDY-KPEPWMPEFRELMCAVSCRTFVGH----------YMTDA  171
            EE      +   + +           +         V C    G                
Sbjct  119  EEEARDLVEKLRKTAGEPGVIDITDLL---FRAALNVICSILFGERFGSLEDPKFLELVK  175

Query  172  AIKKIADDYYMITAALELVNFPFILPFTKAWYGKKASDMVLEEFSNCAAKSKAHMAAGGE  231
            A+++++    + + + +L++   IL +    +G+K                     A  +
Sbjct  176  AVQELSSL--LSSPSPQLLDLFPILKYFPGPHGRK------------------LKRARKK  215

Query  232  ITCIMDAWVKAQQDSAKYNEKIAK-GLPVEDSEKPSHLLREFTDYEIAQTVFTLLFASQD  290
            I  ++D  ++ ++++    +K  +  L      K      + TD E+  TV  L FA  D
Sbjct  216  IKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTD  275

Query  291  ATSAACTWLFQLVADRPDVLEKIREENLRVRNGNINAPLTMDLLDEMKYTRAVVRETLRY  350
             TS+  +W    +A  P+V EK+REE   V         T D L  M Y  AV++ETLR 
Sbjct  276  TTSSTLSWALYELAKHPEVQEKLREEIDEVIGD--KRSPTYDDLQNMPYLDAVIKETLRL  333

Query  351  RPPVIM-VPYLVKKDFPITDSITVSKGSMIIPSVWPATHDPEAYPNPDSFDPDRWITGDA  409
             P V + +P  V KD  I     + KG+++I +++    DPE +PNP+ FDP+R++  D 
Sbjct  334  HPVVPLLLPREVTKDTVI-PGYLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERFL--DE  390

Query  410  EKQAKN---FLVFGTGPHYCLGQTYAQLNL  436
              + +    FL FG GP  CLG+  A++ +
Sbjct  391  NGKFRKSFAFLPFGAGPRNCLGERLARMEM  420



Lambda      K        H        a         alpha
   0.321    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598144560


Query= TCONS_00000620

Length=702
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  143     4e-40
CDD:463421 pfam11987, IF-2, Translation-initiation factor 2. IF-2...  92.1    8e-23


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 143 bits (364),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 67/233 (29%), Positives = 88/233 (38%), Gaps = 67/233 (29%)

Query  189  RSPICCILGHVDTGKTKLLDKIRQT-------------------NVQEGEAGGITQQIGA  229
            R     I+GHVD GKT L D++                      N+ E    GIT +  A
Sbjct  2    RHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSAA  61

Query  230  TYFPVDALRQKTAVVNKDGKFEFKIPGLLVIDTPGHESFSNLRSRGSSLCNIAILVVDIM  289
              F                  E K   + +IDTPGH  F     RG +  + AILVVD +
Sbjct  62   VSF------------------ETKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAV  103

Query  290  HGLEPQTLESMRLLRERKTPFIVALNKIDRLYGWKKIDNNGFQDSLAMQSKGVQNEFRTR  349
             G+ PQT E +RL R+   P IV +NK+DR+ G            L    + V  E    
Sbjct  104  EGVMPQTREHLRLARQLGVPIIVFINKMDRVDG----------AELEEVVEEVSREL---  150

Query  350  LEHTKLLFAEQGFNAELYYENKSMARNVSLVPTSAHTGEGIPDMLKLLTTLTQ  402
                           E Y E+      V +VP SA  GEG+  +L  L     
Sbjct  151  --------------LEKYGEDGE---FVPVVPGSALKGEGVQTLLDALDEYLP  186


>CDD:463421 pfam11987, IF-2, Translation-initiation factor 2.  IF-2 is a 
translation initiator in each of the three main phylogenetic 
domains (Eukaryotes, Bacteria and Archaea). IF2 interacts with 
formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal 
subunits. Through these interactions, IF2 promotes the binding 
of the initiator tRNA to the A site in the smaller ribosomal 
subunit and catalyzes the hydrolysis of GTP following initiation-complex 
formation.
Length=116

 Score = 92.1 bits (230),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 34/115 (30%), Positives = 58/115 (50%), Gaps = 13/115 (11%)

Query  522  VMSDLENLLSKVSRDQR--GVSVQASTLGSLEALLEFLRV-----SKIPVANISIGPVYK  574
                LE+L S++  + +   + ++A   GSLEAL E L        K+ + +  +G + +
Sbjct  8    KKVSLEDLFSQIKEEVKELNLIIKADVQGSLEALKESLEKLSNDEVKVNIIHSGVGAITE  67

Query  575  RDVMMCGTMLEKAKEYAVMLCFDVKVDKEAAAYAEEVGVKIFTADIIYHLFDDFT  629
             DVM+       +   A+++ F+V+ D +A   AE+ GV I   +IIY L DD  
Sbjct  68   SDVMLA------SASNAIIIGFNVRPDAKARKLAEKEGVDIRYYNIIYDLIDDVK  116



Lambda      K        H        a         alpha
   0.312    0.130    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 898147110


Query= TCONS_00000621

Length=702
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  143     4e-40
CDD:463421 pfam11987, IF-2, Translation-initiation factor 2. IF-2...  92.1    8e-23


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 143 bits (364),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 67/233 (29%), Positives = 88/233 (38%), Gaps = 67/233 (29%)

Query  189  RSPICCILGHVDTGKTKLLDKIRQT-------------------NVQEGEAGGITQQIGA  229
            R     I+GHVD GKT L D++                      N+ E    GIT +  A
Sbjct  2    RHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSAA  61

Query  230  TYFPVDALRQKTAVVNKDGKFEFKIPGLLVIDTPGHESFSNLRSRGSSLCNIAILVVDIM  289
              F                  E K   + +IDTPGH  F     RG +  + AILVVD +
Sbjct  62   VSF------------------ETKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAV  103

Query  290  HGLEPQTLESMRLLRERKTPFIVALNKIDRLYGWKKIDNNGFQDSLAMQSKGVQNEFRTR  349
             G+ PQT E +RL R+   P IV +NK+DR+ G            L    + V  E    
Sbjct  104  EGVMPQTREHLRLARQLGVPIIVFINKMDRVDG----------AELEEVVEEVSREL---  150

Query  350  LEHTKLLFAEQGFNAELYYENKSMARNVSLVPTSAHTGEGIPDMLKLLTTLTQ  402
                           E Y E+      V +VP SA  GEG+  +L  L     
Sbjct  151  --------------LEKYGEDGE---FVPVVPGSALKGEGVQTLLDALDEYLP  186


>CDD:463421 pfam11987, IF-2, Translation-initiation factor 2.  IF-2 is a 
translation initiator in each of the three main phylogenetic 
domains (Eukaryotes, Bacteria and Archaea). IF2 interacts with 
formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal 
subunits. Through these interactions, IF2 promotes the binding 
of the initiator tRNA to the A site in the smaller ribosomal 
subunit and catalyzes the hydrolysis of GTP following initiation-complex 
formation.
Length=116

 Score = 92.1 bits (230),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 34/115 (30%), Positives = 58/115 (50%), Gaps = 13/115 (11%)

Query  522  VMSDLENLLSKVSRDQR--GVSVQASTLGSLEALLEFLRV-----SKIPVANISIGPVYK  574
                LE+L S++  + +   + ++A   GSLEAL E L        K+ + +  +G + +
Sbjct  8    KKVSLEDLFSQIKEEVKELNLIIKADVQGSLEALKESLEKLSNDEVKVNIIHSGVGAITE  67

Query  575  RDVMMCGTMLEKAKEYAVMLCFDVKVDKEAAAYAEEVGVKIFTADIIYHLFDDFT  629
             DVM+       +   A+++ F+V+ D +A   AE+ GV I   +IIY L DD  
Sbjct  68   SDVMLA------SASNAIIIGFNVRPDAKARKLAEKEGVDIRYYNIIYDLIDDVK  116



Lambda      K        H        a         alpha
   0.312    0.130    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 898147110


Query= TCONS_00006717

Length=728
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  144     2e-40
CDD:463421 pfam11987, IF-2, Translation-initiation factor 2. IF-2...  92.9    5e-23


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 144 bits (367),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 67/233 (29%), Positives = 88/233 (38%), Gaps = 67/233 (29%)

Query  215  RSPICCILGHVDTGKTKLLDKIRQT-------------------NVQEGEAGGITQQIGA  255
            R     I+GHVD GKT L D++                      N+ E    GIT +  A
Sbjct  2    RHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSAA  61

Query  256  TYFPVDALRQKTAVVNKDGKFEFKIPGLLVIDTPGHESFSNLRSRGSSLCNIAILVVDIM  315
              F                  E K   + +IDTPGH  F     RG +  + AILVVD +
Sbjct  62   VSF------------------ETKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAV  103

Query  316  HGLEPQTLESMRLLRERKTPFIVALNKIDRLYGWKKIDNNGFQDSLAMQSKGVQNEFRTR  375
             G+ PQT E +RL R+   P IV +NK+DR+ G            L    + V  E    
Sbjct  104  EGVMPQTREHLRLARQLGVPIIVFINKMDRVDG----------AELEEVVEEVSREL---  150

Query  376  LEHTKLLFAEQGFNAELYYENKSMARNVSLVPTSAHTGEGIPDMLKLLTTLTQ  428
                           E Y E+      V +VP SA  GEG+  +L  L     
Sbjct  151  --------------LEKYGEDGE---FVPVVPGSALKGEGVQTLLDALDEYLP  186


>CDD:463421 pfam11987, IF-2, Translation-initiation factor 2.  IF-2 is a 
translation initiator in each of the three main phylogenetic 
domains (Eukaryotes, Bacteria and Archaea). IF2 interacts with 
formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal 
subunits. Through these interactions, IF2 promotes the binding 
of the initiator tRNA to the A site in the smaller ribosomal 
subunit and catalyzes the hydrolysis of GTP following initiation-complex 
formation.
Length=116

 Score = 92.9 bits (232),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 34/115 (30%), Positives = 58/115 (50%), Gaps = 13/115 (11%)

Query  548  VMSDLENLLSKVSRDQR--GVSVQASTLGSLEALLEFLRV-----SKIPVANISIGPVYK  600
                LE+L S++  + +   + ++A   GSLEAL E L        K+ + +  +G + +
Sbjct  8    KKVSLEDLFSQIKEEVKELNLIIKADVQGSLEALKESLEKLSNDEVKVNIIHSGVGAITE  67

Query  601  RDVMMCGTMLEKAKEYAVMLCFDVKVDKEAAAYAEEVGVKIFTADIIYHLFDDFT  655
             DVM+       +   A+++ F+V+ D +A   AE+ GV I   +IIY L DD  
Sbjct  68   SDVMLA------SASNAIIIGFNVRPDAKARKLAEKEGVDIRYYNIIYDLIDDVK  116



Lambda      K        H        a         alpha
   0.313    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0732    0.140     1.90     42.6     43.6 

Effective search space used: 922566368


Query= TCONS_00006718

Length=418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  83.5    2e-19


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 83.5 bits (207),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 17/175 (10%)

Query  106  QVQLDVNRSFVYYPQCPEDELLLKKDELSILIRRVLREY----PMLSYFQGYHDIAQVLL  161
            Q++ DV R+F      P              +RR+L+ Y    P + Y QG + IA  LL
Sbjct  11   QIEKDVPRTF------PHSFFF-DNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLL  63

Query  162  LVLGEKEAA-PAVTNI-SLFRIRDYMLPSLSPALKHLQLIPAIIEKADPALREHL--GGI  217
            LV  ++E A     ++   + +RD+  P      + L +   +++K  P L +HL   G+
Sbjct  64   LVYLDEEDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGL  123

Query  218  KP-FFALAATLTLYAHDIQEYSDIARLFDFLLATEPVVSIYLFAAIILSRKKELL  271
             P  FA    LTL+A +    S + R++D+         ++  A  IL R +E L
Sbjct  124  DPDLFASQWFLTLFAREFP-LSTVLRIWDYFFLEGEKFVLFRVALAILKRFREEL  177



Lambda      K        H        a         alpha
   0.321    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00000622

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00000624

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  67.3    3e-14


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 67.3 bits (165),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 62/130 (48%), Gaps = 6/130 (5%)

Query  2    LSYFQGYHDIAQVLLLVLGEKEAA-PAVTNI-SLFRIRDYMLPSLSPALKHLQLIPAIIE  59
            + Y QG + IA  LLLV  ++E A     ++   + +RD+  P      + L +   +++
Sbjct  49   VGYCQGMNFIAAPLLLVYLDEEDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYVFEELLK  108

Query  60   KADPALREHL--GGIKP-FFALAATLTLYAHDIQEYSDIARLFDFLLATEPVVSIYLFAA  116
            K  P L +HL   G+ P  FA    LTL+A +    S + R++D+         ++  A 
Sbjct  109  KKLPKLYKHLKELGLDPDLFASQWFLTLFAREFP-LSTVLRIWDYFFLEGEKFVLFRVAL  167

Query  117  IILSRKKELL  126
             IL R +E L
Sbjct  168  AILKRFREEL  177



Lambda      K        H        a         alpha
   0.325    0.138    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00000625

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461468 pfam04893, Yip1, Yip1 domain. The Yip1 integral membra...  60.5    1e-11


>CDD:461468 pfam04893, Yip1, Yip1 domain.  The Yip1 integral membrane domain 
contains four transmembrane alpha helices. The domain is 
characterized by the motifs DLYGP and GY. The Yip1 protein 
is a golgi protein involved in vesicular transport that interacts 
with GTPases.
Length=173

 Score = 60.5 bits (147),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 7/171 (4%)

Query  97   LYPRTNFLDVLEGNADLYGPFWIATTVVVILFLTGTISQWLSNNNSKHFAYDFTLLSGAA  156
              PR  F  + E   DL GP  I   ++ +L     +        +       + L+ A 
Sbjct  5    TSPREFFRRIREEPPDLLGPLLILLLLLALLAALALLIGGTQVGWALSLT-QLSALAVAI  63

Query  157  GLVYG---YTGVIPIALWGALRWFGSSTADLIECWALYGYSNLVWIAVALVSW-SPLTAL  212
            G + G      ++   L+   R FG       +  A+ GY+ L  I   L+S   PL  L
Sbjct  64   GALIGILLGLLILAALLYWLGRLFG-GRGSFKQTLAVAGYALLPLILGGLLSGLLPLLWL  122

Query  213  NWALVGVGFG-WTVFFLLRNLYPVLSATDAKTSKILLIMVIVLHAGFAIAI  262
              +LVG+ FG W+++ L   L      +  K + ++  ++++L     + +
Sbjct  123  PLSLVGLLFGIWSLYLLYLGLKEAHGLSSKKAAALIAALLLLLLLLLLVLL  173



Lambda      K        H        a         alpha
   0.323    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00000626

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461468 pfam04893, Yip1, Yip1 domain. The Yip1 integral membra...  59.8    2e-11


>CDD:461468 pfam04893, Yip1, Yip1 domain.  The Yip1 integral membrane domain 
contains four transmembrane alpha helices. The domain is 
characterized by the motifs DLYGP and GY. The Yip1 protein 
is a golgi protein involved in vesicular transport that interacts 
with GTPases.
Length=173

 Score = 59.8 bits (145),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 7/171 (4%)

Query  97   LYPRTNFLDVLEGNADLYGPFWIATTVVVILFLTGTISQWLSNNNSKHFAYDFTLLSGAA  156
              PR  F  + E   DL GP  I   ++ +L     +        +       + L+ A 
Sbjct  5    TSPREFFRRIREEPPDLLGPLLILLLLLALLAALALLIGGTQVGWALSLT-QLSALAVAI  63

Query  157  GLVYG---YTGVIPIALWGALRWFGSSTADLIECWALYGYSNLVWIAVALVSW-SPLTAL  212
            G + G      ++   L+   R FG       +  A+ GY+ L  I   L+S   PL  L
Sbjct  64   GALIGILLGLLILAALLYWLGRLFG-GRGSFKQTLAVAGYALLPLILGGLLSGLLPLLWL  122

Query  213  NWALVGVGFG-WTVFFLLRNLYPVLSATDAKTSKILLIMVIVLHAGFAIAI  262
              +LVG+ FG W+++ L   L      +  K + ++  ++++L     + +
Sbjct  123  PLSLVGLLFGIWSLYLLYLGLKEAHGLSSKKAAALIAALLLLLLLLLLVLL  173



Lambda      K        H        a         alpha
   0.324    0.139    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00000627

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00000628

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family. Vps52 complexes...  349     1e-113


>CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family.  Vps52 complexes with 
Vps53 and Vps54 to form a multi- subunit complex involved in 
regulating membrane trafficking events.
Length=508

 Score = 349 bits (897),  Expect = 1e-113, Method: Composition-based stats.
 Identities = 169/518 (33%), Positives = 280/518 (54%), Gaps = 21/518 (4%)

Query  156  QTLQQFEKERDKYQELHAAITSCDDVSKSVEVYLNDFQSELGAVSAEIETLQTRSVQLNA  215
            +++  + KE      LH  I +CD V + +E  L +FQS+L  +S++I+ LQ +S ++  
Sbjct  4    KSIFDYIKESSNIASLHNQIAACDSVLEQMEDMLTEFQSDLSNISSDIDFLQEKSNEMQL  63

Query  216  MLENRRKVEQLLGPAVEEISISPRAVRMIAEGPIDENWVKALNEIEARMTSIEAKVSGSS  275
             LENR+ VE  L P V+++ + P  +  I EGP++E +     EI  +  S     S   
Sbjct  64   RLENRQAVESKLSPFVDDLIVPPELIDDIIEGPVNEPFFATQLEILNKKLSNVLDQS-FK  122

Query  276  STKAIEDVRPLLNDIKNKAVERIRDYLVSQIRALRSPNINAQIIQQQRLVKFKDLYSYIS  335
            S+KA +DV  LL+ ++NKA+E+IR Y+V +I+  R P  N QIIQ   L+K+K ++ ++ 
Sbjct  123  SSKAPKDVDQLLDKLRNKAIEKIRRYIVQKIKTFRKPMTNYQIIQN-ALLKYKFIFPFLL  181

Query  336  RAHPQLTGEITQAYINTMRWYYLSHFSRYLQALEKIKVYPSDRNDILGGDPSAPKTGHII  395
              +  L  E+ QAYI+TM   YLS+F  Y++ L K++    D  D L G       G   
Sbjct  182  DNNRSLALELRQAYIDTMNKIYLSYFRSYIRRLTKLQFEEIDTKDDLMG-VETTAKGLFF  240

Query  396  SSGRSGSAAHDPFSLGRRIDILRTS-NHMALSAYLAEEDNAFHGIEVPFRNFNLALVDNI  454
            S   S    +  F++G+R +IL    +   L  ++AE +   + IE  FR+ +LAL+DN 
Sbjct  241  SKPVSLKKRNTIFTIGKRGNILTMQLDAPILVPHIAENNTTKYYIEALFRSLHLALLDNA  300

Query  455  SAEYSFMTEMFSTLSFHQISRKAVEIFEPVFALGQGLTKQLIENSTDSLGVLICVRLNQQ  514
            ++EY F+ E F+ +S  Q      +IF    +      +QLI +  D++GVL+ +R+  +
Sbjct  301  TSEYLFLKEFFA-VSGDQAEDIFEQIFGKTLSEATKYLEQLISDCYDAIGVLLSIRIINR  359

Query  515  AAFELQRRKVPVADSYINGINMQLWPRFQVIMDLHRESLKRVASNTGRSAVSALSLAGGD  574
                 +RR VP  DSY+N + +QLWPRFQ++ D+H ESL++          + ++     
Sbjct  360  LQLIAERRGVPALDSYLNSVLIQLWPRFQLVFDMHCESLRK----------ANITTLVEP  409

Query  575  DLTQSSAPHFLTQRFGQLLHGILVLSSDAGDDEPVANSLKRLVAEFDGLLTKLSRSGGDA  634
            D    + PH+LT+R+ + L   + LS    ++  V   L RL  E +  + +L++     
Sbjct  410  D----TRPHYLTRRYAEFLSSFVTLSVTHPNEI-VERLLNRLQREVEDFILRLAKCFPKR  464

Query  635  KRREKFLFNNYSLVLTIISDTHGKLATEQKQHLDEMLK  672
            K + +FL NNY L+L ++ + H  L+ EQ+    E L 
Sbjct  465  KSQLRFLINNYDLLLGVLMELHLDLSKEQE-DFQEYLN  501



Lambda      K        H        a         alpha
   0.315    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 862752150


Query= TCONS_00000629

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family. Vps52 complexes...  200     2e-60


>CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family.  Vps52 complexes with 
Vps53 and Vps54 to form a multi- subunit complex involved in 
regulating membrane trafficking events.
Length=508

 Score = 200 bits (510),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 96/313 (31%), Positives = 162/313 (52%), Gaps = 18/313 (6%)

Query  1    MRWYYLSHFSRYLQALEKIKVYPSDRNDILGGDPSAPKTGHIISSGRSGSAAHDPFSLGR  60
            M   YLS+F  Y++ L K++    D  D L G       G   S   S    +  F++G+
Sbjct  199  MNKIYLSYFRSYIRRLTKLQFEEIDTKDDLMG-VETTAKGLFFSKPVSLKKRNTIFTIGK  257

Query  61   RIDILRTS-NHMALSAYLAEEDNAFHGIEVPFRNFNLALVDNISAEYSFMTEMFSTLSFH  119
            R +IL    +   L  ++AE +   + IE  FR+ +LAL+DN ++EY F+ E F+ +S  
Sbjct  258  RGNILTMQLDAPILVPHIAENNTTKYYIEALFRSLHLALLDNATSEYLFLKEFFA-VSGD  316

Query  120  QISRKAVEIFEPVFALGQGLTKQLIENSTDSLGVLICVRLNQQAAFELQRRKVPVADSYI  179
            Q      +IF    +      +QLI +  D++GVL+ +R+  +     +RR VP  DSY+
Sbjct  317  QAEDIFEQIFGKTLSEATKYLEQLISDCYDAIGVLLSIRIINRLQLIAERRGVPALDSYL  376

Query  180  NGINMQLWPRFQVIMDLHRESLKRVASNTGRSAVSALSLAGGDDLTQSSAPHFLTQRFGQ  239
            N + +QLWPRFQ++ D+H ESL++          + ++     D    + PH+LT+R+ +
Sbjct  377  NSVLIQLWPRFQLVFDMHCESLRK----------ANITTLVEPD----TRPHYLTRRYAE  422

Query  240  LLHGILVLSSDAGDDEPVANSLKRLVAEFDGLLTKLSRSGGDAKRREKFLFNNYSLVLTI  299
             L   + LS    ++  V   L RL  E +  + +L++     K + +FL NNY L+L +
Sbjct  423  FLSSFVTLSVTHPNEI-VERLLNRLQREVEDFILRLAKCFPKRKSQLRFLINNYDLLLGV  481

Query  300  ISDTHGKLATEQK  312
            + + H  L+ EQ+
Sbjct  482  LMELHLDLSKEQE  494



Lambda      K        H        a         alpha
   0.321    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00006719

Length=653
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family. Vps52 complexes...  339     7e-110


>CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family.  Vps52 complexes with 
Vps53 and Vps54 to form a multi- subunit complex involved in 
regulating membrane trafficking events.
Length=508

 Score = 339 bits (870),  Expect = 7e-110, Method: Composition-based stats.
 Identities = 163/499 (33%), Positives = 271/499 (54%), Gaps = 20/499 (4%)

Query  156  QTLQQFEKERDKYQELHAAITSCDDVSKSVEVYLNDFQSELGAVSAEIETLQTRSVQLNA  215
            +++  + KE      LH  I +CD V + +E  L +FQS+L  +S++I+ LQ +S ++  
Sbjct  4    KSIFDYIKESSNIASLHNQIAACDSVLEQMEDMLTEFQSDLSNISSDIDFLQEKSNEMQL  63

Query  216  MLENRRKVEQLLGPAVEEISISPRAVRMIAEGPIDENWVKALNEIEARMTSIEAKVSGSS  275
             LENR+ VE  L P V+++ + P  +  I EGP++E +     EI  +  S     S   
Sbjct  64   RLENRQAVESKLSPFVDDLIVPPELIDDIIEGPVNEPFFATQLEILNKKLSNVLDQS-FK  122

Query  276  STKAIEDVRPLLNDIKNKAVERIRDYLVSQIRALRSPNINAQIIQQQRLVKFKDLYSYIS  335
            S+KA +DV  LL+ ++NKA+E+IR Y+V +I+  R P  N QIIQ   L+K+K ++ ++ 
Sbjct  123  SSKAPKDVDQLLDKLRNKAIEKIRRYIVQKIKTFRKPMTNYQIIQN-ALLKYKFIFPFLL  181

Query  336  RAHPQLTGEITQAYINTMRWYYLSHFSRYLQALEKIKVYPSDRNDILGGDPSAPKTGHII  395
              +  L  E+ QAYI+TM   YLS+F  Y++ L K++    D  D L G       G   
Sbjct  182  DNNRSLALELRQAYIDTMNKIYLSYFRSYIRRLTKLQFEEIDTKDDLMG-VETTAKGLFF  240

Query  396  SSGRSGSAAHDPFSLGRRIDILRTS-NHMALSAYLAEEDNAFHGIEVPFRNFNLALVDNI  454
            S   S    +  F++G+R +IL    +   L  ++AE +   + IE  FR+ +LAL+DN 
Sbjct  241  SKPVSLKKRNTIFTIGKRGNILTMQLDAPILVPHIAENNTTKYYIEALFRSLHLALLDNA  300

Query  455  SAEYSFMTEMFSTLSFHQISRKAVEIFEPVFALGQGLTKQLIENSTDSLGVLICVRLNQQ  514
            ++EY F+ E F+ +S  Q      +IF    +      +QLI +  D++GVL+ +R+  +
Sbjct  301  TSEYLFLKEFFA-VSGDQAEDIFEQIFGKTLSEATKYLEQLISDCYDAIGVLLSIRIINR  359

Query  515  AAFELQRRKVPVADSYINGINMQLWPRFQVIMDLHRESLKRVASNTGRSAVSALSLAGGD  574
                 +RR VP  DSY+N + +QLWPRFQ++ D+H ESL++          + ++     
Sbjct  360  LQLIAERRGVPALDSYLNSVLIQLWPRFQLVFDMHCESLRK----------ANITTLVEP  409

Query  575  DLTQSSAPHFLTQRFGQLLHGILVLSSDAGDDEPVANSLKRLVAEFDGLLTKLSRSGGDA  634
            D    + PH+LT+R+ + L   + LS    ++  V   L RL  E +  + +L++     
Sbjct  410  D----TRPHYLTRRYAEFLSSFVTLSVTHPNEI-VERLLNRLQREVEDFILRLAKCFPKR  464

Query  635  KRREKFLFNNYSLVLTIIS  653
            K + +FL NNY L+L ++ 
Sbjct  465  KSQLRFLINNYDLLLGVLM  483



Lambda      K        H        a         alpha
   0.315    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 825882400


Query= TCONS_00000630

Length=705
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family. Vps52 complexes...  349     2e-113


>CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family.  Vps52 complexes with 
Vps53 and Vps54 to form a multi- subunit complex involved in 
regulating membrane trafficking events.
Length=508

 Score = 349 bits (898),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 167/510 (33%), Positives = 278/510 (55%), Gaps = 20/510 (4%)

Query  156  QTLQQFEKERDKYQELHAAITSCDDVSKSVEVYLNDFQSELGAVSAEIETLQTRSVQLNA  215
            +++  + KE      LH  I +CD V + +E  L +FQS+L  +S++I+ LQ +S ++  
Sbjct  4    KSIFDYIKESSNIASLHNQIAACDSVLEQMEDMLTEFQSDLSNISSDIDFLQEKSNEMQL  63

Query  216  MLENRRKVEQLLGPAVEEISISPRAVRMIAEGPIDENWVKALNEIEARMTSIEAKVSGSS  275
             LENR+ VE  L P V+++ + P  +  I EGP++E +     EI  +  S     S   
Sbjct  64   RLENRQAVESKLSPFVDDLIVPPELIDDIIEGPVNEPFFATQLEILNKKLSNVLDQS-FK  122

Query  276  STKAIEDVRPLLNDIKNKAVERIRDYLVSQIRALRSPNINAQIIQQQRLVKFKDLYSYIS  335
            S+KA +DV  LL+ ++NKA+E+IR Y+V +I+  R P  N QIIQ   L+K+K ++ ++ 
Sbjct  123  SSKAPKDVDQLLDKLRNKAIEKIRRYIVQKIKTFRKPMTNYQIIQN-ALLKYKFIFPFLL  181

Query  336  RAHPQLTGEITQAYINTMRWYYLSHFSRYLQALEKIKVYPSDRNDILGGDPSAPKTGHII  395
              +  L  E+ QAYI+TM   YLS+F  Y++ L K++    D  D L G       G   
Sbjct  182  DNNRSLALELRQAYIDTMNKIYLSYFRSYIRRLTKLQFEEIDTKDDLMG-VETTAKGLFF  240

Query  396  SSGRSGSAAHDPFSLGRRIDILRTS-NHMALSAYLAEEDNAFHGIEVPFRNFNLALVDNI  454
            S   S    +  F++G+R +IL    +   L  ++AE +   + IE  FR+ +LAL+DN 
Sbjct  241  SKPVSLKKRNTIFTIGKRGNILTMQLDAPILVPHIAENNTTKYYIEALFRSLHLALLDNA  300

Query  455  SAEYSFMTEMFSTLSFHQISRKAVEIFEPVFALGQGLTKQLIENSTDSLGVLICVRLNQQ  514
            ++EY F+ E F+ +S  Q      +IF    +      +QLI +  D++GVL+ +R+  +
Sbjct  301  TSEYLFLKEFFA-VSGDQAEDIFEQIFGKTLSEATKYLEQLISDCYDAIGVLLSIRIINR  359

Query  515  AAFELQRRKVPVADSYINGINMQLWPRFQVIMDLHRESLKRVASNTGRSAVSALSLAGGD  574
                 +RR VP  DSY+N + +QLWPRFQ++ D+H ESL++          + ++     
Sbjct  360  LQLIAERRGVPALDSYLNSVLIQLWPRFQLVFDMHCESLRK----------ANITTLVEP  409

Query  575  DLTQSSAPHFLTQRFGQLLHGILVLSSDAGDDEPVANSLKRLVAEFDGLLTKLSRSGGDA  634
            D    + PH+LT+R+ + L   + LS    ++  V   L RL  E +  + +L++     
Sbjct  410  D----TRPHYLTRRYAEFLSSFVTLSVTHPNEI-VERLLNRLQREVEDFILRLAKCFPKR  464

Query  635  KRREKFLFNNYSLVLTIISDTHGKLATEQK  664
            K + +FL NNY L+L ++ + H  L+ EQ+
Sbjct  465  KSQLRFLINNYDLLLGVLMELHLDLSKEQE  494



Lambda      K        H        a         alpha
   0.316    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 902571480


Query= TCONS_00006720

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family. Vps52 complexes...  190     1e-55


>CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family.  Vps52 complexes with 
Vps53 and Vps54 to form a multi- subunit complex involved in 
regulating membrane trafficking events.
Length=508

 Score = 190 bits (484),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 83/229 (36%), Positives = 133/229 (58%), Gaps = 2/229 (1%)

Query  156  QTLQQFEKERDKYQELHAAITSCDDVSKSVEVYLNDFQSELGAVSAEIETLQTRSVQLNA  215
            +++  + KE      LH  I +CD V + +E  L +FQS+L  +S++I+ LQ +S ++  
Sbjct  4    KSIFDYIKESSNIASLHNQIAACDSVLEQMEDMLTEFQSDLSNISSDIDFLQEKSNEMQL  63

Query  216  MLENRRKVEQLLGPAVEEISISPRAVRMIAEGPIDENWVKALNEIEARMTSIEAKVSGSS  275
             LENR+ VE  L P V+++ + P  +  I EGP++E +     EI  +  S     S   
Sbjct  64   RLENRQAVESKLSPFVDDLIVPPELIDDIIEGPVNEPFFATQLEILNKKLSNVLDQS-FK  122

Query  276  STKAIEDVRPLLNDIKNKAVERIRDYLVSQIRALRSPNINAQIIQQQRLVKFKDLYSYIS  335
            S+KA +DV  LL+ ++NKA+E+IR Y+V +I+  R P  N QII Q  L+K+K ++ ++ 
Sbjct  123  SSKAPKDVDQLLDKLRNKAIEKIRRYIVQKIKTFRKPMTNYQII-QNALLKYKFIFPFLL  181

Query  336  RAHPQLTGEITQAYINTMRWYYLSHFSRYLQALEKIKVYPSDRNDILGG  384
              +  L  E+ QAYI+TM   YLS+F  Y++ L K++    D  D L G
Sbjct  182  DNNRSLALELRQAYIDTMNKIYLSYFRSYIRRLTKLQFEEIDTKDDLMG  230



Lambda      K        H        a         alpha
   0.314    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00000631

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family. Vps52 complexes...  349     2e-113


>CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family.  Vps52 complexes with 
Vps53 and Vps54 to form a multi- subunit complex involved in 
regulating membrane trafficking events.
Length=508

 Score = 349 bits (896),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 170/518 (33%), Positives = 281/518 (54%), Gaps = 21/518 (4%)

Query  156  QTLQQFEKERDKYQELHAAITSCDDVSKSVEVYLNDFQSELGAVSAEIETLQTRSVQLNA  215
            +++  + KE      LH  I +CD V + +E  L +FQS+L  +S++I+ LQ +S ++  
Sbjct  4    KSIFDYIKESSNIASLHNQIAACDSVLEQMEDMLTEFQSDLSNISSDIDFLQEKSNEMQL  63

Query  216  MLENRRKVEQLLGPAVEEISISPRAVRMIAEGPIDENWVKALNEIEARMTSIEAKVSGSS  275
             LENR+ VE  L P V+++ + P  +  I EGP++E +     EI  +  S     S   
Sbjct  64   RLENRQAVESKLSPFVDDLIVPPELIDDIIEGPVNEPFFATQLEILNKKLSNVLDQS-FK  122

Query  276  STKAIEDVRPLLNDIKNKAVERIRDYLVSQIRALRSPNINAQIIQQQRLVKFKDLYSYIS  335
            S+KA +DV  LL+ ++NKA+E+IR Y+V +I+  R P  N QIIQ   L+K+K ++ ++ 
Sbjct  123  SSKAPKDVDQLLDKLRNKAIEKIRRYIVQKIKTFRKPMTNYQIIQN-ALLKYKFIFPFLL  181

Query  336  RAHPQLTGEITQAYINTMRWYYLSHFSRYLQALEKIKVYPSDRNDILGGDPSAPKTGHII  395
              +  L  E+ QAYI+TM   YLS+F  Y++ L K++    D  D L G       G   
Sbjct  182  DNNRSLALELRQAYIDTMNKIYLSYFRSYIRRLTKLQFEEIDTKDDLMG-VETTAKGLFF  240

Query  396  SSGRSGSAAHDPFSLGRRIDILRTS-NHMALSAYLAEEDNAFHGIEVPFRNFNLALVDNI  454
            S   S    +  F++G+R +IL    +   L  ++AE +   + IE  FR+ +LAL+DN 
Sbjct  241  SKPVSLKKRNTIFTIGKRGNILTMQLDAPILVPHIAENNTTKYYIEALFRSLHLALLDNA  300

Query  455  SAEYSFMTEMFSTLSFHQISRKAVEIFEPVFALGQGLTKQLIENSTDSLGVLICVRLNQQ  514
            ++EY F+ E F+ +S  Q      +IF    +      +QLI +  D++GVL+ +R+  +
Sbjct  301  TSEYLFLKEFFA-VSGDQAEDIFEQIFGKTLSEATKYLEQLISDCYDAIGVLLSIRIINR  359

Query  515  AAFELQRRKVPVADSYINGINMQLWPRFQVIMDLHRESLKRVASNTGRSAVSALSLAGGD  574
                 +RR VP  DSY+N + +QLWPRFQ++ D+H ESL++          + ++     
Sbjct  360  LQLIAERRGVPALDSYLNSVLIQLWPRFQLVFDMHCESLRK----------ANITTLVEP  409

Query  575  DLTQSSAPHFLTQRFGQLLHGILVLSSDAGDDEPVANSLKRLVAEFDGLLTKLSRSGGDA  634
            D    + PH+LT+R+ + L   + LS    ++  V   L RL  E +  + +L++     
Sbjct  410  D----TRPHYLTRRYAEFLSSFVTLSVTHPNEI-VERLLNRLQREVEDFILRLAKCFPKR  464

Query  635  KRREKFLFNNYSLVLTIISDTHGKLATEQKQDLDEMLK  672
            K + +FL NNY L+L ++ + H  L+ EQ+ D  E L 
Sbjct  465  KSQLRFLINNYDLLLGVLMELHLDLSKEQE-DFQEYLN  501



Lambda      K        H        a         alpha
   0.315    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 862752150


Query= TCONS_00006721

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family. Vps52 complexes...  200     1e-60


>CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family.  Vps52 complexes with 
Vps53 and Vps54 to form a multi- subunit complex involved in 
regulating membrane trafficking events.
Length=508

 Score = 200 bits (509),  Expect = 1e-60, Method: Composition-based stats.
 Identities = 98/321 (31%), Positives = 164/321 (51%), Gaps = 19/321 (6%)

Query  1    MRWYYLSHFSRYLQALEKIKVYPSDRNDILGGDPSAPKTGHIISSGRSGSAAHDPFSLGR  60
            M   YLS+F  Y++ L K++    D  D L G       G   S   S    +  F++G+
Sbjct  199  MNKIYLSYFRSYIRRLTKLQFEEIDTKDDLMG-VETTAKGLFFSKPVSLKKRNTIFTIGK  257

Query  61   RIDILRTS-NHMALSAYLAEEDNAFHGIEVPFRNFNLALVDNISAEYSFMTEMFSTLSFH  119
            R +IL    +   L  ++AE +   + IE  FR+ +LAL+DN ++EY F+ E F+ +S  
Sbjct  258  RGNILTMQLDAPILVPHIAENNTTKYYIEALFRSLHLALLDNATSEYLFLKEFFA-VSGD  316

Query  120  QISRKAVEIFEPVFALGQGLTKQLIENSTDSLGVLICVRLNQQAAFELQRRKVPVADSYI  179
            Q      +IF    +      +QLI +  D++GVL+ +R+  +     +RR VP  DSY+
Sbjct  317  QAEDIFEQIFGKTLSEATKYLEQLISDCYDAIGVLLSIRIINRLQLIAERRGVPALDSYL  376

Query  180  NGINMQLWPRFQVIMDLHRESLKRVASNTGRSAVSALSLAGGDDLTQSSAPHFLTQRFGQ  239
            N + +QLWPRFQ++ D+H ESL++          + ++     D    + PH+LT+R+ +
Sbjct  377  NSVLIQLWPRFQLVFDMHCESLRK----------ANITTLVEPD----TRPHYLTRRYAE  422

Query  240  LLHGILVLSSDAGDDEPVANSLKRLVAEFDGLLTKLSRSGGDAKRREKFLFNNYSLVLTI  299
             L   + LS    ++  V   L RL  E +  + +L++     K + +FL NNY L+L +
Sbjct  423  FLSSFVTLSVTHPNEI-VERLLNRLQREVEDFILRLAKCFPKRKSQLRFLINNYDLLLGV  481

Query  300  ISDTHGKLATEQKQHLDEMLK  320
            + + H  L+ EQ+    E L 
Sbjct  482  LMELHLDLSKEQE-DFQEYLN  501



Lambda      K        H        a         alpha
   0.320    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00000632

Length=676
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family. Vps52 complexes...  339     1e-109


>CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family.  Vps52 complexes with 
Vps53 and Vps54 to form a multi- subunit complex involved in 
regulating membrane trafficking events.
Length=508

 Score = 339 bits (870),  Expect = 1e-109, Method: Composition-based stats.
 Identities = 163/499 (33%), Positives = 271/499 (54%), Gaps = 20/499 (4%)

Query  156  QTLQQFEKERDKYQELHAAITSCDDVSKSVEVYLNDFQSELGAVSAEIETLQTRSVQLNA  215
            +++  + KE      LH  I +CD V + +E  L +FQS+L  +S++I+ LQ +S ++  
Sbjct  4    KSIFDYIKESSNIASLHNQIAACDSVLEQMEDMLTEFQSDLSNISSDIDFLQEKSNEMQL  63

Query  216  MLENRRKVEQLLGPAVEEISISPRAVRMIAEGPIDENWVKALNEIEARMTSIEAKVSGSS  275
             LENR+ VE  L P V+++ + P  +  I EGP++E +     EI  +  S     S   
Sbjct  64   RLENRQAVESKLSPFVDDLIVPPELIDDIIEGPVNEPFFATQLEILNKKLSNVLDQS-FK  122

Query  276  STKAIEDVRPLLNDIKNKAVERIRDYLVSQIRALRSPNINAQIIQQQRLVKFKDLYSYIS  335
            S+KA +DV  LL+ ++NKA+E+IR Y+V +I+  R P  N QIIQ   L+K+K ++ ++ 
Sbjct  123  SSKAPKDVDQLLDKLRNKAIEKIRRYIVQKIKTFRKPMTNYQIIQN-ALLKYKFIFPFLL  181

Query  336  RAHPQLTGEITQAYINTMRWYYLSHFSRYLQALEKIKVYPSDRNDILGGDPSAPKTGHII  395
              +  L  E+ QAYI+TM   YLS+F  Y++ L K++    D  D L G       G   
Sbjct  182  DNNRSLALELRQAYIDTMNKIYLSYFRSYIRRLTKLQFEEIDTKDDLMG-VETTAKGLFF  240

Query  396  SSGRSGSAAHDPFSLGRRIDILRTS-NHMALSAYLAEEDNAFHGIEVPFRNFNLALVDNI  454
            S   S    +  F++G+R +IL    +   L  ++AE +   + IE  FR+ +LAL+DN 
Sbjct  241  SKPVSLKKRNTIFTIGKRGNILTMQLDAPILVPHIAENNTTKYYIEALFRSLHLALLDNA  300

Query  455  SAEYSFMTEMFSTLSFHQISRKAVEIFEPVFALGQGLTKQLIENSTDSLGVLICVRLNQQ  514
            ++EY F+ E F+ +S  Q      +IF    +      +QLI +  D++GVL+ +R+  +
Sbjct  301  TSEYLFLKEFFA-VSGDQAEDIFEQIFGKTLSEATKYLEQLISDCYDAIGVLLSIRIINR  359

Query  515  AAFELQRRKVPVADSYINGINMQLWPRFQVIMDLHRESLKRVASNTGRSAVSALSLAGGD  574
                 +RR VP  DSY+N + +QLWPRFQ++ D+H ESL++          + ++     
Sbjct  360  LQLIAERRGVPALDSYLNSVLIQLWPRFQLVFDMHCESLRK----------ANITTLVEP  409

Query  575  DLTQSSAPHFLTQRFGQLLHGILVLSSDAGDDEPVANSLKRLVAEFDGLLTKLSRSGGDA  634
            D    + PH+LT+R+ + L   + LS    ++  V   L RL  E +  + +L++     
Sbjct  410  D----TRPHYLTRRYAEFLSSFVTLSVTHPNEI-VERLLNRLQREVEDFILRLAKCFPKR  464

Query  635  KRREKFLFNNYSLVLTIIS  653
            K + +FL NNY L+L ++ 
Sbjct  465  KSQLRFLINNYDLLLGVLM  483



Lambda      K        H        a         alpha
   0.316    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 859802570


Query= TCONS_00000633

Length=676
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family. Vps52 complexes...  339     1e-109


>CDD:282044 pfam04129, Vps52, Vps52 / Sac2 family.  Vps52 complexes with 
Vps53 and Vps54 to form a multi- subunit complex involved in 
regulating membrane trafficking events.
Length=508

 Score = 339 bits (870),  Expect = 1e-109, Method: Composition-based stats.
 Identities = 163/499 (33%), Positives = 271/499 (54%), Gaps = 20/499 (4%)

Query  156  QTLQQFEKERDKYQELHAAITSCDDVSKSVEVYLNDFQSELGAVSAEIETLQTRSVQLNA  215
            +++  + KE      LH  I +CD V + +E  L +FQS+L  +S++I+ LQ +S ++  
Sbjct  4    KSIFDYIKESSNIASLHNQIAACDSVLEQMEDMLTEFQSDLSNISSDIDFLQEKSNEMQL  63

Query  216  MLENRRKVEQLLGPAVEEISISPRAVRMIAEGPIDENWVKALNEIEARMTSIEAKVSGSS  275
             LENR+ VE  L P V+++ + P  +  I EGP++E +     EI  +  S     S   
Sbjct  64   RLENRQAVESKLSPFVDDLIVPPELIDDIIEGPVNEPFFATQLEILNKKLSNVLDQS-FK  122

Query  276  STKAIEDVRPLLNDIKNKAVERIRDYLVSQIRALRSPNINAQIIQQQRLVKFKDLYSYIS  335
            S+KA +DV  LL+ ++NKA+E+IR Y+V +I+  R P  N QIIQ   L+K+K ++ ++ 
Sbjct  123  SSKAPKDVDQLLDKLRNKAIEKIRRYIVQKIKTFRKPMTNYQIIQN-ALLKYKFIFPFLL  181

Query  336  RAHPQLTGEITQAYINTMRWYYLSHFSRYLQALEKIKVYPSDRNDILGGDPSAPKTGHII  395
              +  L  E+ QAYI+TM   YLS+F  Y++ L K++    D  D L G       G   
Sbjct  182  DNNRSLALELRQAYIDTMNKIYLSYFRSYIRRLTKLQFEEIDTKDDLMG-VETTAKGLFF  240

Query  396  SSGRSGSAAHDPFSLGRRIDILRTS-NHMALSAYLAEEDNAFHGIEVPFRNFNLALVDNI  454
            S   S    +  F++G+R +IL    +   L  ++AE +   + IE  FR+ +LAL+DN 
Sbjct  241  SKPVSLKKRNTIFTIGKRGNILTMQLDAPILVPHIAENNTTKYYIEALFRSLHLALLDNA  300

Query  455  SAEYSFMTEMFSTLSFHQISRKAVEIFEPVFALGQGLTKQLIENSTDSLGVLICVRLNQQ  514
            ++EY F+ E F+ +S  Q      +IF    +      +QLI +  D++GVL+ +R+  +
Sbjct  301  TSEYLFLKEFFA-VSGDQAEDIFEQIFGKTLSEATKYLEQLISDCYDAIGVLLSIRIINR  359

Query  515  AAFELQRRKVPVADSYINGINMQLWPRFQVIMDLHRESLKRVASNTGRSAVSALSLAGGD  574
                 +RR VP  DSY+N + +QLWPRFQ++ D+H ESL++          + ++     
Sbjct  360  LQLIAERRGVPALDSYLNSVLIQLWPRFQLVFDMHCESLRK----------ANITTLVEP  409

Query  575  DLTQSSAPHFLTQRFGQLLHGILVLSSDAGDDEPVANSLKRLVAEFDGLLTKLSRSGGDA  634
            D    + PH+LT+R+ + L   + LS    ++  V   L RL  E +  + +L++     
Sbjct  410  D----TRPHYLTRRYAEFLSSFVTLSVTHPNEI-VERLLNRLQREVEDFILRLAKCFPKR  464

Query  635  KRREKFLFNNYSLVLTIIS  653
            K + +FL NNY L+L ++ 
Sbjct  465  KSQLRFLINNYDLLLGVLM  483



Lambda      K        H        a         alpha
   0.316    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 859802570


Query= TCONS_00000634

Length=76
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase. This fam...  56.6    7e-12


>CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase.  This family includes 
various FAD dependent oxidoreductases: Glycerol-3-phosphate 
dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit 
EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate 
oxidase EC:1.4.3.1.
Length=339

 Score = 56.6 bits (137),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 30/45 (67%), Gaps = 1/45 (2%)

Query  32  AVIGAGVVGLAIARQLALRQGTSTILLERHDAVGTETSSRNSEVI  76
            VIG G+VGL+ A +LA R+G S  LLER D  G+  S RN+ +I
Sbjct  3   VVIGGGIVGLSTAYELA-RRGLSVTLLERGDDPGSGASGRNAGLI  46



Lambda      K        H        a         alpha
   0.321    0.128    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00000635

Length=303


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00006722

Length=247


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00006723

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00000636

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395909 pfam01144, CoA_trans, Coenzyme A transferase               181     2e-57


>CDD:395909 pfam01144, CoA_trans, Coenzyme A transferase.  
Length=216

 Score = 181 bits (462),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 101/235 (43%), Positives = 130/235 (55%), Gaps = 27/235 (11%)

Query  33   SAQEAI-KDMKGSSTVLCGGFGFSGVANTLINAVRDRPDIKDLTVVSNNAGMPGAGLGQL  91
            SA EA+ K++K   TV  GGFG  G+  TLI A+  R  +KDLTV+SN AG    GLG L
Sbjct  3    SAAEAVAKEIKDGMTVNVGGFGLIGIPETLIAALA-RSGVKDLTVISNEAG--VLGLGPL  59

Query  92   LESGQITKMIASFIGE--NKVFEKMYLNGDLALELTPQGTIAEKCAAGAAGIP--AFYTP  147
            L +G + K+IAS+ GE  N  F + Y +G+L  EL PQG +A++  AG AGIP   F T 
Sbjct  60   LLNGSVKKVIASYGGETANPEFGRQYFSGELEFELWPQGGLADRLRAGGAGIPFEGFLTN  119

Query  148  AAYGTIVQTGELPVRYNKDGTVKEYSKPKEVRQFNGKNYLLEESIFGDYALIRVHKADKL  207
               GT V                     K V  F G  YLLE ++  D ALI+  KAD  
Sbjct  120  TGIGTYVAPK------------------KRVPGFGGAMYLLEPALRADVALIKASKADGE  161

Query  208  GNCQFRKAMNNFNE-AMAKNAKYTIVEADHIVEVGELSPEEIHLQGIYVNKVIQS  261
            GN  FR    NFN  A+A  AK TI+E + IVE GEL P  +H  G+ V+ V+++
Sbjct  162  GNLVFRTTAPNFNGPAVAAAAKVTILEVEEIVEKGELLPLTVHTPGVLVDAVVEA  216



Lambda      K        H        a         alpha
   0.317    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00000637

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395909 pfam01144, CoA_trans, Coenzyme A transferase               178     9e-54


>CDD:395909 pfam01144, CoA_trans, Coenzyme A transferase.  
Length=216

 Score = 178 bits (454),  Expect = 9e-54, Method: Composition-based stats.
 Identities = 101/235 (43%), Positives = 130/235 (55%), Gaps = 27/235 (11%)

Query  33   SAQEAI-KDMKGSSTVLCGGFGFSGVANTLINAVRDRPDIKDLTVVSNNAGMPGAGLGQL  91
            SA EA+ K++K   TV  GGFG  G+  TLI A+  R  +KDLTV+SN AG    GLG L
Sbjct  3    SAAEAVAKEIKDGMTVNVGGFGLIGIPETLIAALA-RSGVKDLTVISNEAG--VLGLGPL  59

Query  92   LESGQITKMIASFIGE--NKVFEKMYLNGDLALELTPQGTIAEKCAAGAAGIP--AFYTP  147
            L +G + K+IAS+ GE  N  F + Y +G+L  EL PQG +A++  AG AGIP   F T 
Sbjct  60   LLNGSVKKVIASYGGETANPEFGRQYFSGELEFELWPQGGLADRLRAGGAGIPFEGFLTN  119

Query  148  AAYGTIVQTGELPVRYNKDGTVKEYSKPKEVRQFNGKNYLLEESIFGDYALIRVHKADKL  207
               GT V                     K V  F G  YLLE ++  D ALI+  KAD  
Sbjct  120  TGIGTYVAPK------------------KRVPGFGGAMYLLEPALRADVALIKASKADGE  161

Query  208  GNCQFRKAMNNFNE-AMAKNAKYTIVEADHIVEVGELSPEEIHLQGIYVNKVIQS  261
            GN  FR    NFN  A+A  AK TI+E + IVE GEL P  +H  G+ V+ V+++
Sbjct  162  GNLVFRTTAPNFNGPAVAAAAKVTILEVEEIVEKGELLPLTVHTPGVLVDAVVEA  216


 Score = 153 bits (390),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 62/214 (29%), Positives = 83/214 (39%), Gaps = 18/214 (8%)

Query  291  RERIVKRAAKELKDGMYVNLG----IGIP-LITPAYLPEGV--EVVLQAENGILGLGPYP  343
             E   +  AKE+KDGM VN+G    IGIP  +  A    GV    V+  E G+LGLGP  
Sbjct  1    VESAAEAVAKEIKDGMTVNVGGFGLIGIPETLIAALARSGVKDLTVISNEAGVLGLGPLL  60

Query  344  KPGEEDPDLINPGKETVTLSSGASVFGSHESFG-MIRAGRIDLTMLGALQVSQYGDLANF  402
              G     + + G ET     G   F     F    + G  D    G   +   G L N 
Sbjct  61   LNGSVKKVIASYGGETANPEFGRQYFSGELEFELWPQGGLADRLRAGGAGIPFEGFLTNT  120

Query  403  MLP------GKVKGVGGAMDLVANPEKTKVVVTMEHTDKKGNPKILPECTFPLTGPRCV-  455
             +        +V G GGAM L+        V  ++ +   G   ++   T P      V 
Sbjct  121  GIGTYVAPKKRVPGFGGAMYLLEPA-LRADVALIKASKADGEGNLVFRTTAPNFNGPAVA  179

Query  456  -WKIITDLAVFD-VSPTEGLTLAETAEGVTVDEI  487
                +T L V + V   E L L     GV VD +
Sbjct  180  AAAKVTILEVEEIVEKGELLPLTVHTPGVLVDAV  213



Lambda      K        H        a         alpha
   0.316    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00000638

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395909 pfam01144, CoA_trans, Coenzyme A transferase               58.9    5e-12


>CDD:395909 pfam01144, CoA_trans, Coenzyme A transferase.  
Length=216

 Score = 58.9 bits (143),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 27/68 (40%), Positives = 33/68 (49%), Gaps = 7/68 (10%)

Query  76   RERIVKRAAKELKDGMYVNLG----IGIP-LITPAYLPEGV--EVVLQAENGILGLGPYP  128
             E   +  AKE+KDGM VN+G    IGIP  +  A    GV    V+  E G+LGLGP  
Sbjct  1    VESAAEAVAKEIKDGMTVNVGGFGLIGIPETLIAALARSGVKDLTVISNEAGVLGLGPLL  60

Query  129  KPGEEDPD  136
              G     
Sbjct  61   LNGSVKKV  68



Lambda      K        H        a         alpha
   0.312    0.134    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00000639

Length=166
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395909 pfam01144, CoA_trans, Coenzyme A transferase               103     2e-28


>CDD:395909 pfam01144, CoA_trans, Coenzyme A transferase.  
Length=216

 Score = 103 bits (258),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 60/125 (48%), Positives = 77/125 (62%), Gaps = 8/125 (6%)

Query  33   SAQEAI-KDMKGSSTVLCGGFGFSGVANTLINAVRDRPDIKDLTVVSNNAGMPGAGLGQL  91
            SA EA+ K++K   TV  GGFG  G+  TLI A+  R  +KDLTV+SN AG    GLG L
Sbjct  3    SAAEAVAKEIKDGMTVNVGGFGLIGIPETLIAALA-RSGVKDLTVISNEAG--VLGLGPL  59

Query  92   LESGQITKMIASFIGE--NKVFEKMYLNGDLALELTPQGTIAEKCAAGAAGIP--AFYTP  147
            L +G + K+IAS+ GE  N  F + Y +G+L  EL PQG +A++  AG AGIP   F T 
Sbjct  60   LLNGSVKKVIASYGGETANPEFGRQYFSGELEFELWPQGGLADRLRAGGAGIPFEGFLTN  119

Query  148  AAYGT  152
               GT
Sbjct  120  TGIGT  124



Lambda      K        H        a         alpha
   0.319    0.136    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00006724

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395909 pfam01144, CoA_trans, Coenzyme A transferase               131     6e-39


>CDD:395909 pfam01144, CoA_trans, Coenzyme A transferase.  
Length=216

 Score = 131 bits (331),  Expect = 6e-39, Method: Composition-based stats.
 Identities = 55/199 (28%), Positives = 74/199 (37%), Gaps = 18/199 (9%)

Query  1    MYVNLG----IGIP-LITPAYLPEGV--EVVLQAENGILGLGPYPKPGEEDPDLINPGKE  53
            M VN+G    IGIP  +  A    GV    V+  E G+LGLGP    G     + + G E
Sbjct  16   MTVNVGGFGLIGIPETLIAALARSGVKDLTVISNEAGVLGLGPLLLNGSVKKVIASYGGE  75

Query  54   TVTLSSGASVFGSHESFG-MIRAGRIDLTMLGALQVSQYGDLANFMLP------GKVKGV  106
            T     G   F     F    + G  D    G   +   G L N  +        +V G 
Sbjct  76   TANPEFGRQYFSGELEFELWPQGGLADRLRAGGAGIPFEGFLTNTGIGTYVAPKKRVPGF  135

Query  107  GGAMDLVANPEKTKVVVTMEHTDKKGNPKILPECTFPLTGPRCV--WKIITDLAVFD-VS  163
            GGAM L+        V  ++ +   G   ++   T P      V     +T L V + V 
Sbjct  136  GGAMYLLEPA-LRADVALIKASKADGEGNLVFRTTAPNFNGPAVAAAAKVTILEVEEIVE  194

Query  164  PTEGLTLAETAEGVTVDEI  182
              E L L     GV VD +
Sbjct  195  KGELLPLTVHTPGVLVDAV  213



Lambda      K        H        a         alpha
   0.316    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00006725

Length=307


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00000641

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  258     1e-83


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 258 bits (662),  Expect = 1e-83, Method: Composition-based stats.
 Identities = 105/392 (27%), Positives = 147/392 (38%), Gaps = 53/392 (14%)

Query  57   PDKVNLGIGVYRTEDGDPWPLSVVEQAEAQLFHANNVARHEYLTIQGDVKFLALARDLVF  116
             DK+NLG   Y  +        +   A+A+        R+ Y    G  +        + 
Sbjct  1    TDKINLGSNEYLGDT-------LPAVAKAEKDALAGGTRNLYGPTDGHPELREALAKFLG  53

Query  117  GFGESPSNEQVAAQDRIASIQTISGTGANRLGADFLARTIKPSCVWIPDPTWANHYTIWE  176
                      V   DR A++   SG GAN     FL        + +P PT+A++  I  
Sbjct  54   -------RSPVLKLDREAAVVFGSGAGANIEALIFLLANPG-DAILVPAPTYASYIRIAR  105

Query  177  LVGVEVRTYPYYDHKGNCFDYERTTRLLSAQAKKGDVVILHACAHNPTGADPSKEQWRKL  236
            L G EV  YP YD      D++     L  + K    V+LH   HNPTG   + E+  KL
Sbjct  106  LAGGEVVRYPLYDSNDFHLDFDALEAALKEKPK----VVLHTSPHNPTGTVATLEELEKL  161

Query  237  AVLCQQKGLVPFFDLAYQGFASGSLDEDAWAIRHFMNCKPELEFCVAQSFSKNFGLYGQR  296
              L ++  ++   D AY GF  G    DA A R  +         V  SFSK FGL G R
Sbjct  162  LDLAKEHNILLLVDEAYAGFVFG--SPDAVATRALL--AEGPNLLVVGSFSKAFGLAGWR  217

Query  297  TGALHVVTSSSSGTLPQVVLANLSHLVRGEYSMAPRGGSEIVRTVLSDEGLRQQWYEDLK  356
             G +              V++ L  L R  YS             LSD  L     E+  
Sbjct  218  VGYI---------LGNAAVISQLRKLARPFYS--STHLQAAAAAALSDPLLVASELEE--  264

Query  357  HMSGRIKQMRQALYDELIRLGTPGTWNHVLEQIGMFTYTGLTEPQVLEIRR----RHHIY  412
             M  RIK+ R  L D L   G     + +  Q G F  TGL      E+ +       +Y
Sbjct  265  -MRQRIKERRDYLRDGLQAAG----LSVLPSQAGFFLLTGLDPETAKELAQVLLEEVGVY  319

Query  413  MMK--------SGRISMAGLNSKNVRYVARAI  436
            +            RI++AG   + +  +  AI
Sbjct  320  VTPGSSPGVPGWLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.319    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00006726

Length=307


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0774    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00000642

Length=222


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00000643

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  258     1e-83


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 258 bits (662),  Expect = 1e-83, Method: Composition-based stats.
 Identities = 105/392 (27%), Positives = 147/392 (38%), Gaps = 53/392 (14%)

Query  57   PDKVNLGIGVYRTEDGDPWPLSVVEQAEAQLFHANNVARHEYLTIQGDVKFLALARDLVF  116
             DK+NLG   Y  +        +   A+A+        R+ Y    G  +        + 
Sbjct  1    TDKINLGSNEYLGDT-------LPAVAKAEKDALAGGTRNLYGPTDGHPELREALAKFLG  53

Query  117  GFGESPSNEQVAAQDRIASIQTISGTGANRLGADFLARTIKPSCVWIPDPTWANHYTIWE  176
                      V   DR A++   SG GAN     FL        + +P PT+A++  I  
Sbjct  54   -------RSPVLKLDREAAVVFGSGAGANIEALIFLLANPG-DAILVPAPTYASYIRIAR  105

Query  177  LVGVEVRTYPYYDHKGNCFDYERTTRLLSAQAKKGDVVILHACAHNPTGADPSKEQWRKL  236
            L G EV  YP YD      D++     L  + K    V+LH   HNPTG   + E+  KL
Sbjct  106  LAGGEVVRYPLYDSNDFHLDFDALEAALKEKPK----VVLHTSPHNPTGTVATLEELEKL  161

Query  237  AVLCQQKGLVPFFDLAYQGFASGSLDEDAWAIRHFMNCKPELEFCVAQSFSKNFGLYGQR  296
              L ++  ++   D AY GF  G    DA A R  +         V  SFSK FGL G R
Sbjct  162  LDLAKEHNILLLVDEAYAGFVFG--SPDAVATRALL--AEGPNLLVVGSFSKAFGLAGWR  217

Query  297  TGALHVVTSSSSGTLPQVVLANLSHLVRGEYSMAPRGGSEIVRTVLSDEGLRQQWYEDLK  356
             G +              V++ L  L R  YS             LSD  L     E+  
Sbjct  218  VGYI---------LGNAAVISQLRKLARPFYS--STHLQAAAAAALSDPLLVASELEE--  264

Query  357  HMSGRIKQMRQALYDELIRLGTPGTWNHVLEQIGMFTYTGLTEPQVLEIRR----RHHIY  412
             M  RIK+ R  L D L   G     + +  Q G F  TGL      E+ +       +Y
Sbjct  265  -MRQRIKERRDYLRDGLQAAG----LSVLPSQAGFFLLTGLDPETAKELAQVLLEEVGVY  319

Query  413  MMK--------SGRISMAGLNSKNVRYVARAI  436
            +            RI++AG   + +  +  AI
Sbjct  320  VTPGSSPGVPGWLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.319    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00006727

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  247     3e-79


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 247 bits (632),  Expect = 3e-79, Method: Composition-based stats.
 Identities = 103/380 (27%), Positives = 142/380 (37%), Gaps = 53/380 (14%)

Query  57   PDKVNLGIGVYRTEDGDPWPLSVVEQAEAQLFHANNVARHEYLTIQGDVKFLALARDLVF  116
             DK+NLG   Y  +        +   A+A+        R+ Y    G  +        + 
Sbjct  1    TDKINLGSNEYLGDT-------LPAVAKAEKDALAGGTRNLYGPTDGHPELREALAKFLG  53

Query  117  GFGESPSNEQVAAQDRIASIQTISGTGANRLGADFLARTIKPSCVWIPDPTWANHYTIWE  176
                      V   DR A++   SG GAN     FL        + +P PT+A++  I  
Sbjct  54   -------RSPVLKLDREAAVVFGSGAGANIEALIFLLANPG-DAILVPAPTYASYIRIAR  105

Query  177  LVGVEVRTYPYYDHKGNCFDYERTTRLLSAQAKKGDVVILHACAHNPTGADPSKEQWRKL  236
            L G EV  YP YD      D++     L  + K    V+LH   HNPTG   + E+  KL
Sbjct  106  LAGGEVVRYPLYDSNDFHLDFDALEAALKEKPK----VVLHTSPHNPTGTVATLEELEKL  161

Query  237  AVLCQQKGLVPFFDLAYQGFASGSLDEDAWAIRHFMNCKPELEFCVAQSFSKNFGLYGQR  296
              L ++  ++   D AY GF  G    DA A R  +         V  SFSK FGL G R
Sbjct  162  LDLAKEHNILLLVDEAYAGFVFG--SPDAVATRALL--AEGPNLLVVGSFSKAFGLAGWR  217

Query  297  TGALHVVTSSSSGTLPQVVLANLSHLVRGEYSMAPRGGSEIVRTVLSDEGLRQQWYEDLK  356
             G +              V++ L  L R  YS             LSD  L     E+  
Sbjct  218  VGYI---------LGNAAVISQLRKLARPFYS--STHLQAAAAAALSDPLLVASELEE--  264

Query  357  HMSGRIKQMRQALYDELIRLGTPGTWNHVLEQIGMFTYTGLTEPQVLEIRR----RHHIY  412
             M  RIK+ R  L D L   G     + +  Q G F  TGL      E+ +       +Y
Sbjct  265  -MRQRIKERRDYLRDGLQAAG----LSVLPSQAGFFLLTGLDPETAKELAQVLLEEVGVY  319

Query  413  MMK--------SGRISMAGC  424
            +            RI++AG 
Sbjct  320  VTPGSSPGVPGWLRITVAGG  339



Lambda      K        H        a         alpha
   0.319    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00006728

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  256     1e-82


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 256 bits (657),  Expect = 1e-82, Method: Composition-based stats.
 Identities = 105/392 (27%), Positives = 147/392 (38%), Gaps = 53/392 (14%)

Query  57   PDKVNLGIGVYRTEDGDPWPLSVVEQAEAQLFHANNVARHEYLTIQGDVKFLALARDLVF  116
             DK+NLG   Y  +        +   A+A+        R+ Y    G  +        + 
Sbjct  1    TDKINLGSNEYLGDT-------LPAVAKAEKDALAGGTRNLYGPTDGHPELREALAKFLG  53

Query  117  GFGESPSNEQVAAQDRIASIQTISGTGANRLGADFLARTIKPSCVWIPDPTWANHYTIWE  176
                      V   DR A++   SG GAN     FL        + +P PT+A++  I  
Sbjct  54   -------RSPVLKLDREAAVVFGSGAGANIEALIFLLANPG-DAILVPAPTYASYIRIAR  105

Query  177  LVGVEVRTYPYYDHKGNCFDYERTTRLLSAQAKKGDVVILHACAHNPTGADPSKEQWRKL  236
            L G EV  YP YD      D++     L  + K    V+LH   HNPTG   + E+  KL
Sbjct  106  LAGGEVVRYPLYDSNDFHLDFDALEAALKEKPK----VVLHTSPHNPTGTVATLEELEKL  161

Query  237  AVLCQQKGLVPFFDLAYQGFASGSLDEDAWAIRHFMNCKPELEFCVAQSFSKNFGLYGQR  296
              L ++  ++   D AY GF  G    DA A R  +         V  SFSK FGL G R
Sbjct  162  LDLAKEHNILLLVDEAYAGFVFG--SPDAVATRALL--AEGPNLLVVGSFSKAFGLAGWR  217

Query  297  TGALHVVTSSSSGTLPQVVLANLSHLVRGEYSMAPRGGSEIVRTVLSDEGLRQQWYEDLK  356
             G +              V++ L  L R  YS             LSD  L     E+  
Sbjct  218  VGYI---------LGNAAVISQLRKLARPFYS--STHLQAAAAAALSDPLLVASELEE--  264

Query  357  HMSGRIKQMRQALYDELIRLGTPGTWNHVLEQVGMFTYTGLTEPQVLEIRR----RHHIY  412
             M  RIK+ R  L D L   G     + +  Q G F  TGL      E+ +       +Y
Sbjct  265  -MRQRIKERRDYLRDGLQAAG----LSVLPSQAGFFLLTGLDPETAKELAQVLLEEVGVY  319

Query  413  MMK--------SGRISMAGLNSKNVRYVARAI  436
            +            RI++AG   + +  +  AI
Sbjct  320  VTPGSSPGVPGWLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.319    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00000644

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  91.1    3e-23


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 91.1 bits (227),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 46/70 (66%), Gaps = 0/70 (0%)

Query  235  VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMN  294
            +++ N+  + T+E+ + +F KFG I S  L RD+ G+S+GF FV F   + A+ A++ +N
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEALN  60

Query  295  DKEIKGQKLY  304
             KE+ G++L 
Sbjct  61   GKELGGRELK  70


 Score = 75.7 bits (187),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 26/69 (38%), Positives = 40/69 (58%), Gaps = 0/69 (0%)

Query  142  VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN  201
            +F+ NL      + L D F+ FG I S ++ +DE G SKG+ FV +E  E A  AI+ +N
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEALN  60

Query  202  GMLLNDKKV  210
            G  L  +++
Sbjct  61   GKELGGREL  69


 Score = 75.3 bits (186),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (61%), Gaps = 1/71 (1%)

Query  54   LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL  113
            L+VG L P  TE  L +LFS  G + SIR+ RD  T RS G+A+V + +  D E+A+E L
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDE-TGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  114  NYTLIKGKPCR  124
            N   + G+  +
Sbjct  60   NGKELGGRELK  70



Lambda      K        H        a         alpha
   0.311    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00000645

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  91.1    3e-23


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 91.1 bits (227),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 46/70 (66%), Gaps = 0/70 (0%)

Query  235  VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMN  294
            +++ N+  + T+E+ + +F KFG I S  L RD+ G+S+GF FV F   + A+ A++ +N
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEALN  60

Query  295  DKEIKGQKLY  304
             KE+ G++L 
Sbjct  61   GKELGGRELK  70


 Score = 75.7 bits (187),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 26/69 (38%), Positives = 40/69 (58%), Gaps = 0/69 (0%)

Query  142  VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN  201
            +F+ NL      + L D F+ FG I S ++ +DE G SKG+ FV +E  E A  AI+ +N
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEALN  60

Query  202  GMLLNDKKV  210
            G  L  +++
Sbjct  61   GKELGGREL  69


 Score = 75.3 bits (186),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (61%), Gaps = 1/71 (1%)

Query  54   LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL  113
            L+VG L P  TE  L +LFS  G + SIR+ RD  T RS G+A+V + +  D E+A+E L
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDE-TGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  114  NYTLIKGKPCR  124
            N   + G+  +
Sbjct  60   NGKELGGRELK  70



Lambda      K        H        a         alpha
   0.311    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00006729

Length=1017
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  72.6    3e-14


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 72.6 bits (179),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 34/126 (27%), Positives = 51/126 (40%), Gaps = 35/126 (28%)

Query  879   TSVTNEAFKSGSEPKLFEE--NDQHLLYPNPAAVEQRREVLRQLGFVENSPEWNEQVRDL  936
             T ++ E F       LFE    D    + NP++ E                       +L
Sbjct  1     TLLSKELFDPNY--GLFEYETEDDRTYWFNPSSSESP-------------------DLEL  39

Query  937   LRRYEFLGRIIGKCLYEGILVDVNFAPFFLLKWALTGGAGSAQRETAYRANLNDLKDLDQ  996
             L  ++FLG+++GK +Y GIL+D+ F PFF  K                   L DL+ +D 
Sbjct  40    LDYFKFLGKLLGKAIYNGILLDLPFPPFFYKKLL------------GEPLTLEDLESIDP  87

Query  997   GLYQGL  1002
              LY+ L
Sbjct  88    ELYKSL  93



Lambda      K        H        a         alpha
   0.320    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1304021796


Query= TCONS_00000646

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00006730

Length=73
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:286847 pfam09809, MRP-L27, Mitochondrial ribosomal protein L2...  53.9    6e-12


>CDD:286847 pfam09809, MRP-L27, Mitochondrial ribosomal protein L27.  Members 
of this family of proteins are components of the mitochondrial 
ribosome large subunit. They are also involved in apoptosis 
and cell cycle regulation.
Length=97

 Score = 53.9 bits (130),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 36/53 (68%), Gaps = 1/53 (2%)

Query  13  RLRLTTKQVNGGYYKGNRTGSMGYFAKNGSYVIDWKKVRTYVVPENLADFKVR  65
           R+ LTTK+ N  +YKG     +G    +G YVI+W+KVRT+VVP NL  FK++
Sbjct  6   RVPLTTKRGNKTFYKGTGARGIGRHTSSGRYVINWEKVRTFVVP-NLEGFKLK  57



Lambda      K        H        a         alpha
   0.324    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00006732

Length=960
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461368 pfam04615, Utp14, Utp14 protein. This protein is found...  674     0.0  


>CDD:461368 pfam04615, Utp14, Utp14 protein.  This protein is found to be 
part of a large ribonucleoprotein complex containing the U3 
snoRNA. Depletion of the Utp proteins impedes production of 
the 18S rRNA, indicating that they are part of the active pre-rRNA 
processing complex. This large RNP complex has been 
termed the small subunit (SSU) processome.
Length=704

 Score = 674 bits (1740),  Expect = 0.0, Method: Composition-based stats.
 Identities = 347/746 (47%), Positives = 439/746 (59%), Gaps = 81/746 (11%)

Query  252  SKLQSFVNALEPESTNKPSRRAGGAQEHAKPTEYGLTSSRKLTVADLLPSI--TDSRLKS  309
             KL SF++ L+     K  +     +E  + +E+GLTS  KL++ADLL  +   DS LK 
Sbjct  1    DKLLSFISGLD--GKKKKRKLKDRTEEAGQESEFGLTSGGKLSLADLLLPLVKKDSSLKK  58

Query  310  SLKHVDATPSSHKQSSGIPGKLDAPLAKRQQDRLDRAAAYEKSKETLNRWLETVKANRRA  369
            SLK +        +      KL APL KRQQDRLDR AAYEK+KE L++W  TVK NRRA
Sbjct  59   SLKLL--------EKEKKSKKLAAPLPKRQQDRLDRKAAYEKTKEELDKWEPTVKRNRRA  110

Query  370  EHLMFPLPDPDAQQIHRIGPT----KPQTDLEATIHNILVESGLADPSGKSTEEQVQEFE  425
            EHL FPL  PD      + P     KP+T+LE  I +IL ESGLA+      E+++  FE
Sbjct  111  EHLSFPLQQPDTVGKSTLAPLASKFKPRTELEKKIASILEESGLAE------EKKLATFE  164

Query  426  ELQARKLPIEEIRARRAELRKQRDLLFREEVRAKRIKKIKSKSYRRVHRKERERLQQQER  485
            EL   KL +EE++ RRAELRK R+L+FREE +AKRIKKIKSK+YRR+HRKERE+  ++E 
Sbjct  165  ELALNKLSVEEVKERRAELRKMRELMFREEAKAKRIKKIKSKTYRRIHRKEREKEAEKEE  224

Query  486  QALLEAGVDLEEEDREMNERRRAEARMGAKLKD-SKWAKSLKQTGRTAWDEDARRGAAEQ  544
            +AL EA ++ +EE+RE  ER+RAE RM  K K+ SKWAKS+K+ GR AWDE+ R   AEQ
Sbjct  225  EALAEAALEDDEEEREKQERKRAEERMTLKHKNTSKWAKSMKKRGRAAWDEETRAALAEQ  284

Query  545  ALKEEELRRRIEGKSVSRADEDYLGSSSSESEDEDPWAEDAGSDAEKQKLRKKLEGLERD  604
              + EELRR+IEGK VS  D+D    SS          ED   +  K   RKKL  L+  
Sbjct  285  LRRGEELRRKIEGKDVSDDDDDSDDDSSDS--------EDEDDNDAKLVKRKKLGKLKEL  336

Query  605  DVDA-SEITGPHAKLFSMKFMQNAEAARKAENDAEIRRLNRELR-----GEEESQSEAES  658
            +  A  E  GP + L SMKFM+ AEA RK END EI  L REL        +E + E + 
Sbjct  337  EEKAEEEEEGPESGLLSMKFMKRAEARRKEENDEEIEELRRELEQGDEEDGDEEEEEEQG  396

Query  659  EVGRRKFGQSQDDKSGKDMKQKSLP------RTEFEEAPGSDDEADAAPDQEVGIVVNQF  712
             VGRR FG     KS K  K+KS        R EFEE    D E  A             
Sbjct  397  NVGRRVFGPGAKVKSLKSKKKKSDSKVDSSKREEFEEDKSKDLEDRAKKK----------  446

Query  713  NKKKSSERSGKPQSARPSGGAPEQKATTIEEENPWLVTKRNNRRATADDSQQIIDATLGA  772
              KKSS+ S K  S          +    +E NPWL   +  ++ ++      +D +   
Sbjct  447  KAKKSSKESKKLAS------EAASEEEADDESNPWLDESKTAKKTSSKVE-VFVDKSSSK  499

Query  773  ETVEAPKKQKDKPIVSSTLGQA-------------------EDDNGSDDEESVPVLLKNH  813
             T    K +K K   SS    +                   +DD+  ++E  +PV  K  
Sbjct  500  ATKSKNKIKKSKKKNSSKKKSSKDDALIDIDLSNTLKDESDDDDDDEEEEVDLPVAFKQR  559

Query  814  DLVKRAFAGDEVVQEFEQDKLETIEEEGDKVIDETLPGWGSWTGQGVSKREQRRQKKVLT  873
            DL+ RAFAGD+VV EFE++K   IEEE  K ID TLPGWGSW G GV KRE+++ +K L 
Sbjct  560  DLIARAFAGDDVVAEFEKEKKRVIEEEDPKEIDNTLPGWGSWAGDGVKKREKKK-RKFLK  618

Query  874  KVEGVKPENRKDAKLSRVIINEKRIRKNTKYMATQLPHPFETKAQYERSLRLPIGPEWST  933
            KVEGVK + RKDAKL  VIINEKR +KN KY+A+QLP PFE+K QYERSLR+PIGPEW+T
Sbjct  619  KVEGVKKKKRKDAKLKNVIINEKRDKKNAKYLASQLPFPFESKEQYERSLRMPIGPEWNT  678

Query  934  KETLQNATKPRVMIKQG-IIKPMEKP  958
            KET Q  TKPRV+ KQG IIKP++KP
Sbjct  679  KETFQKLTKPRVVTKQGVIIKPLKKP  704



Lambda      K        H        a         alpha
   0.305    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1223316864


Query= TCONS_00006731

Length=723
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 8...  683     0.0   
CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 8...  470     1e-162


>CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 81 C-terminal 
domain.  Family of eukaryotic beta-1,3-glucanases. Within 
the Aspergillus fumigatus protein, two perfectly conserved 
Glu residues (E550 or E554) have been proposed as putative 
nucleophiles of the active site of the Engl1 endoglucanase, 
while the proton donor would be D475. The endo-beta-1,3-glucanase 
activity is essential for efficient spore release. This 
entry represents the helical C-terminal domain.
Length=349

 Score = 683 bits (1766),  Expect = 0.0, Method: Composition-based stats.
 Identities = 233/352 (66%), Positives = 277/352 (79%), Gaps = 5/352 (1%)

Query  359  KISPAAQQVILAAAPTELQQDMDAQTNLNSMYFSGKALSKFATLLYTVDKLGGNSTLAAE  418
              S  A Q+I +AA  ELQQD+ AQ+NL+SMYFSGKAL+KFA +LY V+ + G+  LA  
Sbjct  1    GYSADALQLIASAANKELQQDISAQSNLDSMYFSGKALAKFARILYVVNDILGDEDLAPA  60

Query  419  GLARLKQSFARFIDNRQQFPLVYDNVWKGVVSSASYATGDVGADFGNTLYNDHHFHYGYF  478
            GL +LK++FARF++N QQFPLVYD  W GVVSSA Y TGD GADFGNT YNDHHFHYGYF
Sbjct  61   GLTKLKEAFARFVNNTQQFPLVYDTKWGGVVSSAGY-TGDSGADFGNTYYNDHHFHYGYF  119

Query  479  IHAAAIIGSMDPQWLETSKDWVNMLVRDAGNSAGNDPLFPFSRGFDWFHGHSWAKGLFES  538
            ++AAA+IG +DP WL  +K WVN LVRD  N + +DP FP SR FDWFHGHSWAKGLFES
Sbjct  120  VYAAAVIGKLDPSWLAQNKAWVNTLVRDVANPSSDDPYFPVSRSFDWFHGHSWAKGLFES  179

Query  539  FDGKDEESTSEDAMFAYALKMWGKTIGDVSMEARGNLMLGILRRSMRNYFLMESNNKNHP  598
             DGKD+ES+SED   AYALK+WG  IGD +MEARGNLML I+ RS+  YFL +S+N   P
Sbjct  180  GDGKDQESSSEDYNAAYALKLWGLVIGDANMEARGNLMLAIMARSLNTYFLYKSDNTIQP  239

Query  599  ANFIANKVTGILFENKVDHTTYFGNNLEYIQGIHMLPILPCSAFTRSKQFVKEEWDAMFA  658
            A FI NKV+GILFENK+DHTTYFG N EYIQGIHMLPI P S++ RS  FVKEEWDA F+
Sbjct  240  AEFIGNKVSGILFENKIDHTTYFGTNPEYIQGIHMLPITPISSYIRSPSFVKEEWDAKFS  299

Query  659  SNGPDPAENVVGGWKGVLYANLALVDPAASWNFFTQPNFDYSWIDGGASRTW  710
            +      +NV GGWKG+LYANLAL+DP A++ FF+ PNFD +W+DGGASRTW
Sbjct  300  NG----VDNVEGGWKGILYANLALIDPKAAYEFFSSPNFDLTWLDGGASRTW  347


>CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 81.  Family 
of eukaryotic beta-1,3-glucanases. Within the Aspergillus 
fumigatus protein ENGL1, two perfectly conserved Glu residues 
(E550 or E554) have been proposed as putative nucleophiles 
of the active site of the Engl1 endoglucanase, while the 
proton donor would be D475. The endo-beta-1,3-glucanase activity 
is essential for efficient spore release.
Length=321

 Score = 470 bits (1211),  Expect = 1e-162, Method: Composition-based stats.
 Identities = 174/328 (53%), Positives = 218/328 (66%), Gaps = 10/328 (3%)

Query  26   HPVPKNGIVNTDTPVETNKFYCGLFLGTQTNNTFTHPYSVAWVKGGGTSQSYGMAISHVE  85
            HPVP +G+ N+ +P++TNKFY  LFLG QT   +THPYS+ W KGG    S+G+AISH E
Sbjct  1    HPVPPSGVSNSGSPIQTNKFYANLFLGDQTQPVWTHPYSLWWSKGG----SWGLAISHTE  56

Query  86   SNIVAHGPVNTAIPGSPISYYVNPIGIHSVILSASELGPSTVLTTENPLPFSANAVLRPS  145
            ++    GP      G P  YY NPIGI S++LSA+EL  ST LT  +   FS    L PS
Sbjct  57   ASQRVFGPDP---DGGPAQYYFNPIGIQSLVLSAAELSSSTTLTVSSLTDFSVTVNLSPS  113

Query  146  ASSSQSITIPVVQGMGFVTGIYSNLQPKIQSGVFFTKMVTAGSPRTGIFKYSLSLKDGTS  205
              SS SIT P+VQGMGFVT IY+NL P IQSGV F  +    SP++G+ KY ++L DG +
Sbjct  114  -GSSPSITFPLVQGMGFVTAIYNNLTPVIQSGVGFRSVTAGSSPKSGVTKYRVTLNDGQT  172

Query  206  WLLYATPDDGSDPQLQLASNSEIIGPAGWSGTIQVAKNPAGASG-EKFYDNSSGVYAVEG  264
            WLLYATP  GSD +L L  NS I+G   +SG IQ+AK P      E  YDN++GVY    
Sbjct  173  WLLYATPPSGSDLELTLVDNSTIVGSKPFSGIIQIAKLPGEDGESEAVYDNAAGVYPTGA  232

Query  265  AVMGSVS-ESTGTYSLMWAKAGKDAQNTPLLMFALPHHMESFDASTQSRATNITLRTTTK  323
             + GSVS  +TGTYS  + KAGK   + PLLMFALPHH+ESFD+ T +R T + L +TTK
Sbjct  233  TLSGSVSGGATGTYSFSYTKAGKSESSGPLLMFALPHHVESFDSDTAARVTGLKLDSTTK  292

Query  324  GQATAVIGEYWTMVEPELPISMGFAPWS  351
            G  TAV+G+ WTM EP LP+ +GF PWS
Sbjct  293  GVMTAVLGDSWTMEEPNLPVDIGFLPWS  320



Lambda      K        H        a         alpha
   0.316    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 915290608


Query= TCONS_00000653

Length=960
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461368 pfam04615, Utp14, Utp14 protein. This protein is found...  674     0.0  


>CDD:461368 pfam04615, Utp14, Utp14 protein.  This protein is found to be 
part of a large ribonucleoprotein complex containing the U3 
snoRNA. Depletion of the Utp proteins impedes production of 
the 18S rRNA, indicating that they are part of the active pre-rRNA 
processing complex. This large RNP complex has been 
termed the small subunit (SSU) processome.
Length=704

 Score = 674 bits (1740),  Expect = 0.0, Method: Composition-based stats.
 Identities = 347/746 (47%), Positives = 439/746 (59%), Gaps = 81/746 (11%)

Query  252  SKLQSFVNALEPESTNKPSRRAGGAQEHAKPTEYGLTSSRKLTVADLLPSI--TDSRLKS  309
             KL SF++ L+     K  +     +E  + +E+GLTS  KL++ADLL  +   DS LK 
Sbjct  1    DKLLSFISGLD--GKKKKRKLKDRTEEAGQESEFGLTSGGKLSLADLLLPLVKKDSSLKK  58

Query  310  SLKHVDATPSSHKQSSGIPGKLDAPLAKRQQDRLDRAAAYEKSKETLNRWLETVKANRRA  369
            SLK +        +      KL APL KRQQDRLDR AAYEK+KE L++W  TVK NRRA
Sbjct  59   SLKLL--------EKEKKSKKLAAPLPKRQQDRLDRKAAYEKTKEELDKWEPTVKRNRRA  110

Query  370  EHLMFPLPDPDAQQIHRIGPT----KPQTDLEATIHNILVESGLADPSGKSTEEQVQEFE  425
            EHL FPL  PD      + P     KP+T+LE  I +IL ESGLA+      E+++  FE
Sbjct  111  EHLSFPLQQPDTVGKSTLAPLASKFKPRTELEKKIASILEESGLAE------EKKLATFE  164

Query  426  ELQARKLPIEEIRARRAELRKQRDLLFREEVRAKRIKKIKSKSYRRVHRKERERLQQQER  485
            EL   KL +EE++ RRAELRK R+L+FREE +AKRIKKIKSK+YRR+HRKERE+  ++E 
Sbjct  165  ELALNKLSVEEVKERRAELRKMRELMFREEAKAKRIKKIKSKTYRRIHRKEREKEAEKEE  224

Query  486  QALLEAGVDLEEEDREMNERRRAEARMGAKLKD-SKWAKSLKQTGRTAWDEDARRGAAEQ  544
            +AL EA ++ +EE+RE  ER+RAE RM  K K+ SKWAKS+K+ GR AWDE+ R   AEQ
Sbjct  225  EALAEAALEDDEEEREKQERKRAEERMTLKHKNTSKWAKSMKKRGRAAWDEETRAALAEQ  284

Query  545  ALKEEELRRRIEGKSVSRADEDYLGSSSSESEDEDPWAEDAGSDAEKQKLRKKLEGLERD  604
              + EELRR+IEGK VS  D+D    SS          ED   +  K   RKKL  L+  
Sbjct  285  LRRGEELRRKIEGKDVSDDDDDSDDDSSDS--------EDEDDNDAKLVKRKKLGKLKEL  336

Query  605  DVDA-SEITGPHAKLFSMKFMQNAEAARKAENDAEIRRLNRELR-----GEEESQSEAES  658
            +  A  E  GP + L SMKFM+ AEA RK END EI  L REL        +E + E + 
Sbjct  337  EEKAEEEEEGPESGLLSMKFMKRAEARRKEENDEEIEELRRELEQGDEEDGDEEEEEEQG  396

Query  659  EVGRRKFGQSQDDKSGKDMKQKSLP------RTEFEEAPGSDDEADAAPDQEVGIVVNQF  712
             VGRR FG     KS K  K+KS        R EFEE    D E  A             
Sbjct  397  NVGRRVFGPGAKVKSLKSKKKKSDSKVDSSKREEFEEDKSKDLEDRAKKK----------  446

Query  713  NKKKSSERSGKPQSARPSGGAPEQKATTIEEENPWLVTKRNNRRATADDSQQIIDATLGA  772
              KKSS+ S K  S          +    +E NPWL   +  ++ ++      +D +   
Sbjct  447  KAKKSSKESKKLAS------EAASEEEADDESNPWLDESKTAKKTSSKVE-VFVDKSSSK  499

Query  773  ETVEAPKKQKDKPIVSSTLGQA-------------------EDDNGSDDEESVPVLLKNH  813
             T    K +K K   SS    +                   +DD+  ++E  +PV  K  
Sbjct  500  ATKSKNKIKKSKKKNSSKKKSSKDDALIDIDLSNTLKDESDDDDDDEEEEVDLPVAFKQR  559

Query  814  DLVKRAFAGDEVVQEFEQDKLETIEEEGDKVIDETLPGWGSWTGQGVSKREQRRQKKVLT  873
            DL+ RAFAGD+VV EFE++K   IEEE  K ID TLPGWGSW G GV KRE+++ +K L 
Sbjct  560  DLIARAFAGDDVVAEFEKEKKRVIEEEDPKEIDNTLPGWGSWAGDGVKKREKKK-RKFLK  618

Query  874  KVEGVKPENRKDAKLSRVIINEKRIRKNTKYMATQLPHPFETKAQYERSLRLPIGPEWST  933
            KVEGVK + RKDAKL  VIINEKR +KN KY+A+QLP PFE+K QYERSLR+PIGPEW+T
Sbjct  619  KVEGVKKKKRKDAKLKNVIINEKRDKKNAKYLASQLPFPFESKEQYERSLRMPIGPEWNT  678

Query  934  KETLQNATKPRVMIKQG-IIKPMEKP  958
            KET Q  TKPRV+ KQG IIKP++KP
Sbjct  679  KETFQKLTKPRVVTKQGVIIKPLKKP  704



Lambda      K        H        a         alpha
   0.305    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1223316864


Query= TCONS_00006733

Length=963
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461368 pfam04615, Utp14, Utp14 protein. This protein is found...  577     0.0  


>CDD:461368 pfam04615, Utp14, Utp14 protein.  This protein is found to be 
part of a large ribonucleoprotein complex containing the U3 
snoRNA. Depletion of the Utp proteins impedes production of 
the 18S rRNA, indicating that they are part of the active pre-rRNA 
processing complex. This large RNP complex has been 
termed the small subunit (SSU) processome.
Length=704

 Score = 577 bits (1490),  Expect = 0.0, Method: Composition-based stats.
 Identities = 304/689 (44%), Positives = 389/689 (56%), Gaps = 80/689 (12%)

Query  252  SKLQSFVNALEPESTNKPSRRAGGAQEHAKPTEYGLTSSRKLTVADLLPSI--TDSRLKS  309
             KL SF++ L+     K  +     +E  + +E+GLTS  KL++ADLL  +   DS LK 
Sbjct  1    DKLLSFISGLD--GKKKKRKLKDRTEEAGQESEFGLTSGGKLSLADLLLPLVKKDSSLKK  58

Query  310  SLKHVDATPSSHKQSSGIPGKLDAPLAKRQQDRLDRAAAYEKSKETLNRWLETVKANRRA  369
            SLK +        +      KL APL KRQQDRLDR AAYEK+KE L++W  TVK NRRA
Sbjct  59   SLKLL--------EKEKKSKKLAAPLPKRQQDRLDRKAAYEKTKEELDKWEPTVKRNRRA  110

Query  370  EHLMFPLPDPDAQQIHRIGPT----KPQTDLEATIHNILVESGLADPSGKSTEEQVQEFE  425
            EHL FPL  PD      + P     KP+T+LE  I +IL ESGLA+      E+++  FE
Sbjct  111  EHLSFPLQQPDTVGKSTLAPLASKFKPRTELEKKIASILEESGLAE------EKKLATFE  164

Query  426  ELQARKLPIEEIRARRAELRKQRDLLFREEVRAKRIKKIKSKSYRRVHRKERERLQQQER  485
            EL   KL +EE++ RRAELRK R+L+FREE +AKRIKKIKSK+YRR+HRKERE+  ++E 
Sbjct  165  ELALNKLSVEEVKERRAELRKMRELMFREEAKAKRIKKIKSKTYRRIHRKEREKEAEKEE  224

Query  486  QALLEAGVDLEEEDREMNERRRAEARMGAKLKD-SKWAKSLKQTGRTAWDEDARRGAAEQ  544
            +AL EA ++ +EE+RE  ER+RAE RM  K K+ SKWAKS+K+ GR AWDE+ R   AEQ
Sbjct  225  EALAEAALEDDEEEREKQERKRAEERMTLKHKNTSKWAKSMKKRGRAAWDEETRAALAEQ  284

Query  545  ALKEEELRRRIEGKSVSRADEDYLGSSSSESEDEDPWAEDAGSDAEKQKLRKKLEGLERD  604
              + EELRR+IEGK VS  D+D    SS          ED   +  K   RKKL  L+  
Sbjct  285  LRRGEELRRKIEGKDVSDDDDDSDDDSSDS--------EDEDDNDAKLVKRKKLGKLKEL  336

Query  605  DVDA-SEITGPHAKLFSMKFMQNAEAARKAENDAEIRRLNRELR-----GEEESQSEAES  658
            +  A  E  GP + L SMKFM+ AEA RK END EI  L REL        +E + E + 
Sbjct  337  EEKAEEEEEGPESGLLSMKFMKRAEARRKEENDEEIEELRRELEQGDEEDGDEEEEEEQG  396

Query  659  EVGRRKFGQSQDDKSGKDMKQKSLP------RTEFEEAPGSDDEADAAPDQEVGIVVNQF  712
             VGRR FG     KS K  K+KS        R EFEE    D E  A             
Sbjct  397  NVGRRVFGPGAKVKSLKSKKKKSDSKVDSSKREEFEEDKSKDLEDRAKKK----------  446

Query  713  NKKKSSERSGKPQSARPSGGAPEQKATTIEEENPWLVTKRNNRRATADDSQQIIDATLGA  772
              KKSS+ S K  S          +    +E NPWL   +  ++ ++      +D +   
Sbjct  447  KAKKSSKESKKLAS------EAASEEEADDESNPWLDESKTAKKTSSKVE-VFVDKSSSK  499

Query  773  ETVEAPKKQKDKPIVSSTLGQA-------------------EDDNGSDDEESVPVLLKNH  813
             T    K +K K   SS    +                   +DD+  ++E  +PV  K  
Sbjct  500  ATKSKNKIKKSKKKNSSKKKSSKDDALIDIDLSNTLKDESDDDDDDEEEEVDLPVAFKQR  559

Query  814  DLVKRAFAGDEVVQEFEQDKLETIEEEGDKVIDETLPGWGSWTGQGVSKREQRRQKKVLT  873
            DL+ RAFAGD+VV EFE++K   IEEE  K ID TLPGWGSW G GV KRE+++ +K L 
Sbjct  560  DLIARAFAGDDVVAEFEKEKKRVIEEEDPKEIDNTLPGWGSWAGDGVKKREKKK-RKFLK  618

Query  874  KVEGVKPENRKDAKLSRVIINEKRIRKVS  902
            KVEGVK + RKDAKL  VIINEKR +K +
Sbjct  619  KVEGVKKKKRKDAKLKNVIINEKRDKKNA  647



Lambda      K        H        a         alpha
   0.306    0.126    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1227564492


Query= TCONS_00006734

Length=671
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 8...  539     0.0   
CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 8...  469     4e-163


>CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 81 C-terminal 
domain.  Family of eukaryotic beta-1,3-glucanases. Within 
the Aspergillus fumigatus protein, two perfectly conserved 
Glu residues (E550 or E554) have been proposed as putative 
nucleophiles of the active site of the Engl1 endoglucanase, 
while the proton donor would be D475. The endo-beta-1,3-glucanase 
activity is essential for efficient spore release. This 
entry represents the helical C-terminal domain.
Length=349

 Score = 539 bits (1392),  Expect = 0.0, Method: Composition-based stats.
 Identities = 182/272 (67%), Positives = 214/272 (79%), Gaps = 1/272 (0%)

Query  359  KISPAAQQVILAAAPTELQQDMDAQTNLNSMYFSGKALSKFATLLYTVDKLGGNSTLAAE  418
              S  A Q+I +AA  ELQQD+ AQ+NL+SMYFSGKAL+KFA +LY V+ + G+  LA  
Sbjct  1    GYSADALQLIASAANKELQQDISAQSNLDSMYFSGKALAKFARILYVVNDILGDEDLAPA  60

Query  419  GLARLKQSFARFIDNRQQFPLVYDNVWKGVVSSASYATGDVGADFGNTLYNDHHFHYGYF  478
            GL +LK++FARF++N QQFPLVYD  W GVVSSA Y TGD GADFGNT YNDHHFHYGYF
Sbjct  61   GLTKLKEAFARFVNNTQQFPLVYDTKWGGVVSSAGY-TGDSGADFGNTYYNDHHFHYGYF  119

Query  479  IHAAAIIGSMDPQWLETSKDWVNMLVRDAGNSAGNDPLFPFSRGFDWFHGHSWAKGLFES  538
            ++AAA+IG +DP WL  +K WVN LVRD  N + +DP FP SR FDWFHGHSWAKGLFES
Sbjct  120  VYAAAVIGKLDPSWLAQNKAWVNTLVRDVANPSSDDPYFPVSRSFDWFHGHSWAKGLFES  179

Query  539  FDGKDEESTSEDAMFAYALKMWGKTIGDVSMEARGNLMLGILRRSMRNYFLMESNNKNHP  598
             DGKD+ES+SED   AYALK+WG  IGD +MEARGNLML I+ RS+  YFL +S+N   P
Sbjct  180  GDGKDQESSSEDYNAAYALKLWGLVIGDANMEARGNLMLAIMARSLNTYFLYKSDNTIQP  239

Query  599  ANFIANKVTGILFENKVDHTTYFGNNLEYIQG  630
            A FI NKV+GILFENK+DHTTYFG N EYIQG
Sbjct  240  AEFIGNKVSGILFENKIDHTTYFGTNPEYIQG  271


>CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 81.  Family 
of eukaryotic beta-1,3-glucanases. Within the Aspergillus 
fumigatus protein ENGL1, two perfectly conserved Glu residues 
(E550 or E554) have been proposed as putative nucleophiles 
of the active site of the Engl1 endoglucanase, while the 
proton donor would be D475. The endo-beta-1,3-glucanase activity 
is essential for efficient spore release.
Length=321

 Score = 469 bits (1209),  Expect = 4e-163, Method: Composition-based stats.
 Identities = 174/328 (53%), Positives = 218/328 (66%), Gaps = 10/328 (3%)

Query  26   HPVPKNGIVNTDTPVETNKFYCGLFLGTQTNNTFTHPYSVAWVKGGGTSQSYGMAISHVE  85
            HPVP +G+ N+ +P++TNKFY  LFLG QT   +THPYS+ W KGG    S+G+AISH E
Sbjct  1    HPVPPSGVSNSGSPIQTNKFYANLFLGDQTQPVWTHPYSLWWSKGG----SWGLAISHTE  56

Query  86   SNIVAHGPVNTAIPGSPISYYVNPIGIHSVILSASELGPSTVLTTENPLPFSANAVLRPS  145
            ++    GP      G P  YY NPIGI S++LSA+EL  ST LT  +   FS    L PS
Sbjct  57   ASQRVFGPDP---DGGPAQYYFNPIGIQSLVLSAAELSSSTTLTVSSLTDFSVTVNLSPS  113

Query  146  ASSSQSITIPVVQGMGFVTGIYSNLQPKIQSGVFFTKMVTAGSPRTGIFKYSLSLKDGTS  205
              SS SIT P+VQGMGFVT IY+NL P IQSGV F  +    SP++G+ KY ++L DG +
Sbjct  114  -GSSPSITFPLVQGMGFVTAIYNNLTPVIQSGVGFRSVTAGSSPKSGVTKYRVTLNDGQT  172

Query  206  WLLYATPDDGSDPQLQLASNSEIIGPAGWSGTIQVAKNPAGASG-EKFYDNSSGVYAVEG  264
            WLLYATP  GSD +L L  NS I+G   +SG IQ+AK P      E  YDN++GVY    
Sbjct  173  WLLYATPPSGSDLELTLVDNSTIVGSKPFSGIIQIAKLPGEDGESEAVYDNAAGVYPTGA  232

Query  265  AVMGSVS-ESTGTYSLMWAKAGKDAQNTPLLMFALPHHMESFDASTQSRATNITLRTTTK  323
             + GSVS  +TGTYS  + KAGK   + PLLMFALPHH+ESFD+ T +R T + L +TTK
Sbjct  233  TLSGSVSGGATGTYSFSYTKAGKSESSGPLLMFALPHHVESFDSDTAARVTGLKLDSTTK  292

Query  324  GQATAVIGEYWTMVEPELPISMGFAPWS  351
            G  TAV+G+ WTM EP LP+ +GF PWS
Sbjct  293  GVMTAVLGDSWTMEEPNLPVDIGFLPWS  320



Lambda      K        H        a         alpha
   0.316    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 852428620


Query= TCONS_00000648

Length=960
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461368 pfam04615, Utp14, Utp14 protein. This protein is found...  674     0.0  


>CDD:461368 pfam04615, Utp14, Utp14 protein.  This protein is found to be 
part of a large ribonucleoprotein complex containing the U3 
snoRNA. Depletion of the Utp proteins impedes production of 
the 18S rRNA, indicating that they are part of the active pre-rRNA 
processing complex. This large RNP complex has been 
termed the small subunit (SSU) processome.
Length=704

 Score = 674 bits (1740),  Expect = 0.0, Method: Composition-based stats.
 Identities = 347/746 (47%), Positives = 439/746 (59%), Gaps = 81/746 (11%)

Query  252  SKLQSFVNALEPESTNKPSRRAGGAQEHAKPTEYGLTSSRKLTVADLLPSI--TDSRLKS  309
             KL SF++ L+     K  +     +E  + +E+GLTS  KL++ADLL  +   DS LK 
Sbjct  1    DKLLSFISGLD--GKKKKRKLKDRTEEAGQESEFGLTSGGKLSLADLLLPLVKKDSSLKK  58

Query  310  SLKHVDATPSSHKQSSGIPGKLDAPLAKRQQDRLDRAAAYEKSKETLNRWLETVKANRRA  369
            SLK +        +      KL APL KRQQDRLDR AAYEK+KE L++W  TVK NRRA
Sbjct  59   SLKLL--------EKEKKSKKLAAPLPKRQQDRLDRKAAYEKTKEELDKWEPTVKRNRRA  110

Query  370  EHLMFPLPDPDAQQIHRIGPT----KPQTDLEATIHNILVESGLADPSGKSTEEQVQEFE  425
            EHL FPL  PD      + P     KP+T+LE  I +IL ESGLA+      E+++  FE
Sbjct  111  EHLSFPLQQPDTVGKSTLAPLASKFKPRTELEKKIASILEESGLAE------EKKLATFE  164

Query  426  ELQARKLPIEEIRARRAELRKQRDLLFREEVRAKRIKKIKSKSYRRVHRKERERLQQQER  485
            EL   KL +EE++ RRAELRK R+L+FREE +AKRIKKIKSK+YRR+HRKERE+  ++E 
Sbjct  165  ELALNKLSVEEVKERRAELRKMRELMFREEAKAKRIKKIKSKTYRRIHRKEREKEAEKEE  224

Query  486  QALLEAGVDLEEEDREMNERRRAEARMGAKLKD-SKWAKSLKQTGRTAWDEDARRGAAEQ  544
            +AL EA ++ +EE+RE  ER+RAE RM  K K+ SKWAKS+K+ GR AWDE+ R   AEQ
Sbjct  225  EALAEAALEDDEEEREKQERKRAEERMTLKHKNTSKWAKSMKKRGRAAWDEETRAALAEQ  284

Query  545  ALKEEELRRRIEGKSVSRADEDYLGSSSSESEDEDPWAEDAGSDAEKQKLRKKLEGLERD  604
              + EELRR+IEGK VS  D+D    SS          ED   +  K   RKKL  L+  
Sbjct  285  LRRGEELRRKIEGKDVSDDDDDSDDDSSDS--------EDEDDNDAKLVKRKKLGKLKEL  336

Query  605  DVDA-SEITGPHAKLFSMKFMQNAEAARKAENDAEIRRLNRELR-----GEEESQSEAES  658
            +  A  E  GP + L SMKFM+ AEA RK END EI  L REL        +E + E + 
Sbjct  337  EEKAEEEEEGPESGLLSMKFMKRAEARRKEENDEEIEELRRELEQGDEEDGDEEEEEEQG  396

Query  659  EVGRRKFGQSQDDKSGKDMKQKSLP------RTEFEEAPGSDDEADAAPDQEVGIVVNQF  712
             VGRR FG     KS K  K+KS        R EFEE    D E  A             
Sbjct  397  NVGRRVFGPGAKVKSLKSKKKKSDSKVDSSKREEFEEDKSKDLEDRAKKK----------  446

Query  713  NKKKSSERSGKPQSARPSGGAPEQKATTIEEENPWLVTKRNNRRATADDSQQIIDATLGA  772
              KKSS+ S K  S          +    +E NPWL   +  ++ ++      +D +   
Sbjct  447  KAKKSSKESKKLAS------EAASEEEADDESNPWLDESKTAKKTSSKVE-VFVDKSSSK  499

Query  773  ETVEAPKKQKDKPIVSSTLGQA-------------------EDDNGSDDEESVPVLLKNH  813
             T    K +K K   SS    +                   +DD+  ++E  +PV  K  
Sbjct  500  ATKSKNKIKKSKKKNSSKKKSSKDDALIDIDLSNTLKDESDDDDDDEEEEVDLPVAFKQR  559

Query  814  DLVKRAFAGDEVVQEFEQDKLETIEEEGDKVIDETLPGWGSWTGQGVSKREQRRQKKVLT  873
            DL+ RAFAGD+VV EFE++K   IEEE  K ID TLPGWGSW G GV KRE+++ +K L 
Sbjct  560  DLIARAFAGDDVVAEFEKEKKRVIEEEDPKEIDNTLPGWGSWAGDGVKKREKKK-RKFLK  618

Query  874  KVEGVKPENRKDAKLSRVIINEKRIRKNTKYMATQLPHPFETKAQYERSLRLPIGPEWST  933
            KVEGVK + RKDAKL  VIINEKR +KN KY+A+QLP PFE+K QYERSLR+PIGPEW+T
Sbjct  619  KVEGVKKKKRKDAKLKNVIINEKRDKKNAKYLASQLPFPFESKEQYERSLRMPIGPEWNT  678

Query  934  KETLQNATKPRVMIKQG-IIKPMEKP  958
            KET Q  TKPRV+ KQG IIKP++KP
Sbjct  679  KETFQKLTKPRVVTKQGVIIKPLKKP  704



Lambda      K        H        a         alpha
   0.305    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1223316864


Query= TCONS_00000649

Length=963
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461368 pfam04615, Utp14, Utp14 protein. This protein is found...  577     0.0  


>CDD:461368 pfam04615, Utp14, Utp14 protein.  This protein is found to be 
part of a large ribonucleoprotein complex containing the U3 
snoRNA. Depletion of the Utp proteins impedes production of 
the 18S rRNA, indicating that they are part of the active pre-rRNA 
processing complex. This large RNP complex has been 
termed the small subunit (SSU) processome.
Length=704

 Score = 577 bits (1490),  Expect = 0.0, Method: Composition-based stats.
 Identities = 304/689 (44%), Positives = 389/689 (56%), Gaps = 80/689 (12%)

Query  252  SKLQSFVNALEPESTNKPSRRAGGAQEHAKPTEYGLTSSRKLTVADLLPSI--TDSRLKS  309
             KL SF++ L+     K  +     +E  + +E+GLTS  KL++ADLL  +   DS LK 
Sbjct  1    DKLLSFISGLD--GKKKKRKLKDRTEEAGQESEFGLTSGGKLSLADLLLPLVKKDSSLKK  58

Query  310  SLKHVDATPSSHKQSSGIPGKLDAPLAKRQQDRLDRAAAYEKSKETLNRWLETVKANRRA  369
            SLK +        +      KL APL KRQQDRLDR AAYEK+KE L++W  TVK NRRA
Sbjct  59   SLKLL--------EKEKKSKKLAAPLPKRQQDRLDRKAAYEKTKEELDKWEPTVKRNRRA  110

Query  370  EHLMFPLPDPDAQQIHRIGPT----KPQTDLEATIHNILVESGLADPSGKSTEEQVQEFE  425
            EHL FPL  PD      + P     KP+T+LE  I +IL ESGLA+      E+++  FE
Sbjct  111  EHLSFPLQQPDTVGKSTLAPLASKFKPRTELEKKIASILEESGLAE------EKKLATFE  164

Query  426  ELQARKLPIEEIRARRAELRKQRDLLFREEVRAKRIKKIKSKSYRRVHRKERERLQQQER  485
            EL   KL +EE++ RRAELRK R+L+FREE +AKRIKKIKSK+YRR+HRKERE+  ++E 
Sbjct  165  ELALNKLSVEEVKERRAELRKMRELMFREEAKAKRIKKIKSKTYRRIHRKEREKEAEKEE  224

Query  486  QALLEAGVDLEEEDREMNERRRAEARMGAKLKD-SKWAKSLKQTGRTAWDEDARRGAAEQ  544
            +AL EA ++ +EE+RE  ER+RAE RM  K K+ SKWAKS+K+ GR AWDE+ R   AEQ
Sbjct  225  EALAEAALEDDEEEREKQERKRAEERMTLKHKNTSKWAKSMKKRGRAAWDEETRAALAEQ  284

Query  545  ALKEEELRRRIEGKSVSRADEDYLGSSSSESEDEDPWAEDAGSDAEKQKLRKKLEGLERD  604
              + EELRR+IEGK VS  D+D    SS          ED   +  K   RKKL  L+  
Sbjct  285  LRRGEELRRKIEGKDVSDDDDDSDDDSSDS--------EDEDDNDAKLVKRKKLGKLKEL  336

Query  605  DVDA-SEITGPHAKLFSMKFMQNAEAARKAENDAEIRRLNRELR-----GEEESQSEAES  658
            +  A  E  GP + L SMKFM+ AEA RK END EI  L REL        +E + E + 
Sbjct  337  EEKAEEEEEGPESGLLSMKFMKRAEARRKEENDEEIEELRRELEQGDEEDGDEEEEEEQG  396

Query  659  EVGRRKFGQSQDDKSGKDMKQKSLP------RTEFEEAPGSDDEADAAPDQEVGIVVNQF  712
             VGRR FG     KS K  K+KS        R EFEE    D E  A             
Sbjct  397  NVGRRVFGPGAKVKSLKSKKKKSDSKVDSSKREEFEEDKSKDLEDRAKKK----------  446

Query  713  NKKKSSERSGKPQSARPSGGAPEQKATTIEEENPWLVTKRNNRRATADDSQQIIDATLGA  772
              KKSS+ S K  S          +    +E NPWL   +  ++ ++      +D +   
Sbjct  447  KAKKSSKESKKLAS------EAASEEEADDESNPWLDESKTAKKTSSKVE-VFVDKSSSK  499

Query  773  ETVEAPKKQKDKPIVSSTLGQA-------------------EDDNGSDDEESVPVLLKNH  813
             T    K +K K   SS    +                   +DD+  ++E  +PV  K  
Sbjct  500  ATKSKNKIKKSKKKNSSKKKSSKDDALIDIDLSNTLKDESDDDDDDEEEEVDLPVAFKQR  559

Query  814  DLVKRAFAGDEVVQEFEQDKLETIEEEGDKVIDETLPGWGSWTGQGVSKREQRRQKKVLT  873
            DL+ RAFAGD+VV EFE++K   IEEE  K ID TLPGWGSW G GV KRE+++ +K L 
Sbjct  560  DLIARAFAGDDVVAEFEKEKKRVIEEEDPKEIDNTLPGWGSWAGDGVKKREKKK-RKFLK  618

Query  874  KVEGVKPENRKDAKLSRVIINEKRIRKVS  902
            KVEGVK + RKDAKL  VIINEKR +K +
Sbjct  619  KVEGVKKKKRKDAKLKNVIINEKRDKKNA  647



Lambda      K        H        a         alpha
   0.306    0.126    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1227564492


Query= TCONS_00000650

Length=960
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461368 pfam04615, Utp14, Utp14 protein. This protein is found...  674     0.0  


>CDD:461368 pfam04615, Utp14, Utp14 protein.  This protein is found to be 
part of a large ribonucleoprotein complex containing the U3 
snoRNA. Depletion of the Utp proteins impedes production of 
the 18S rRNA, indicating that they are part of the active pre-rRNA 
processing complex. This large RNP complex has been 
termed the small subunit (SSU) processome.
Length=704

 Score = 674 bits (1740),  Expect = 0.0, Method: Composition-based stats.
 Identities = 347/746 (47%), Positives = 439/746 (59%), Gaps = 81/746 (11%)

Query  252  SKLQSFVNALEPESTNKPSRRAGGAQEHAKPTEYGLTSSRKLTVADLLPSI--TDSRLKS  309
             KL SF++ L+     K  +     +E  + +E+GLTS  KL++ADLL  +   DS LK 
Sbjct  1    DKLLSFISGLD--GKKKKRKLKDRTEEAGQESEFGLTSGGKLSLADLLLPLVKKDSSLKK  58

Query  310  SLKHVDATPSSHKQSSGIPGKLDAPLAKRQQDRLDRAAAYEKSKETLNRWLETVKANRRA  369
            SLK +        +      KL APL KRQQDRLDR AAYEK+KE L++W  TVK NRRA
Sbjct  59   SLKLL--------EKEKKSKKLAAPLPKRQQDRLDRKAAYEKTKEELDKWEPTVKRNRRA  110

Query  370  EHLMFPLPDPDAQQIHRIGPT----KPQTDLEATIHNILVESGLADPSGKSTEEQVQEFE  425
            EHL FPL  PD      + P     KP+T+LE  I +IL ESGLA+      E+++  FE
Sbjct  111  EHLSFPLQQPDTVGKSTLAPLASKFKPRTELEKKIASILEESGLAE------EKKLATFE  164

Query  426  ELQARKLPIEEIRARRAELRKQRDLLFREEVRAKRIKKIKSKSYRRVHRKERERLQQQER  485
            EL   KL +EE++ RRAELRK R+L+FREE +AKRIKKIKSK+YRR+HRKERE+  ++E 
Sbjct  165  ELALNKLSVEEVKERRAELRKMRELMFREEAKAKRIKKIKSKTYRRIHRKEREKEAEKEE  224

Query  486  QALLEAGVDLEEEDREMNERRRAEARMGAKLKD-SKWAKSLKQTGRTAWDEDARRGAAEQ  544
            +AL EA ++ +EE+RE  ER+RAE RM  K K+ SKWAKS+K+ GR AWDE+ R   AEQ
Sbjct  225  EALAEAALEDDEEEREKQERKRAEERMTLKHKNTSKWAKSMKKRGRAAWDEETRAALAEQ  284

Query  545  ALKEEELRRRIEGKSVSRADEDYLGSSSSESEDEDPWAEDAGSDAEKQKLRKKLEGLERD  604
              + EELRR+IEGK VS  D+D    SS          ED   +  K   RKKL  L+  
Sbjct  285  LRRGEELRRKIEGKDVSDDDDDSDDDSSDS--------EDEDDNDAKLVKRKKLGKLKEL  336

Query  605  DVDA-SEITGPHAKLFSMKFMQNAEAARKAENDAEIRRLNRELR-----GEEESQSEAES  658
            +  A  E  GP + L SMKFM+ AEA RK END EI  L REL        +E + E + 
Sbjct  337  EEKAEEEEEGPESGLLSMKFMKRAEARRKEENDEEIEELRRELEQGDEEDGDEEEEEEQG  396

Query  659  EVGRRKFGQSQDDKSGKDMKQKSLP------RTEFEEAPGSDDEADAAPDQEVGIVVNQF  712
             VGRR FG     KS K  K+KS        R EFEE    D E  A             
Sbjct  397  NVGRRVFGPGAKVKSLKSKKKKSDSKVDSSKREEFEEDKSKDLEDRAKKK----------  446

Query  713  NKKKSSERSGKPQSARPSGGAPEQKATTIEEENPWLVTKRNNRRATADDSQQIIDATLGA  772
              KKSS+ S K  S          +    +E NPWL   +  ++ ++      +D +   
Sbjct  447  KAKKSSKESKKLAS------EAASEEEADDESNPWLDESKTAKKTSSKVE-VFVDKSSSK  499

Query  773  ETVEAPKKQKDKPIVSSTLGQA-------------------EDDNGSDDEESVPVLLKNH  813
             T    K +K K   SS    +                   +DD+  ++E  +PV  K  
Sbjct  500  ATKSKNKIKKSKKKNSSKKKSSKDDALIDIDLSNTLKDESDDDDDDEEEEVDLPVAFKQR  559

Query  814  DLVKRAFAGDEVVQEFEQDKLETIEEEGDKVIDETLPGWGSWTGQGVSKREQRRQKKVLT  873
            DL+ RAFAGD+VV EFE++K   IEEE  K ID TLPGWGSW G GV KRE+++ +K L 
Sbjct  560  DLIARAFAGDDVVAEFEKEKKRVIEEEDPKEIDNTLPGWGSWAGDGVKKREKKK-RKFLK  618

Query  874  KVEGVKPENRKDAKLSRVIINEKRIRKNTKYMATQLPHPFETKAQYERSLRLPIGPEWST  933
            KVEGVK + RKDAKL  VIINEKR +KN KY+A+QLP PFE+K QYERSLR+PIGPEW+T
Sbjct  619  KVEGVKKKKRKDAKLKNVIINEKRDKKNAKYLASQLPFPFESKEQYERSLRMPIGPEWNT  678

Query  934  KETLQNATKPRVMIKQG-IIKPMEKP  958
            KET Q  TKPRV+ KQG IIKP++KP
Sbjct  679  KETFQKLTKPRVVTKQGVIIKPLKKP  704



Lambda      K        H        a         alpha
   0.305    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1223316864


Query= TCONS_00000651

Length=671
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 8...  539     0.0   
CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 8...  469     4e-163


>CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 81 C-terminal 
domain.  Family of eukaryotic beta-1,3-glucanases. Within 
the Aspergillus fumigatus protein, two perfectly conserved 
Glu residues (E550 or E554) have been proposed as putative 
nucleophiles of the active site of the Engl1 endoglucanase, 
while the proton donor would be D475. The endo-beta-1,3-glucanase 
activity is essential for efficient spore release. This 
entry represents the helical C-terminal domain.
Length=349

 Score = 539 bits (1392),  Expect = 0.0, Method: Composition-based stats.
 Identities = 182/272 (67%), Positives = 214/272 (79%), Gaps = 1/272 (0%)

Query  359  KISPAAQQVILAAAPTELQQDMDAQTNLNSMYFSGKALSKFATLLYTVDKLGGNSTLAAE  418
              S  A Q+I +AA  ELQQD+ AQ+NL+SMYFSGKAL+KFA +LY V+ + G+  LA  
Sbjct  1    GYSADALQLIASAANKELQQDISAQSNLDSMYFSGKALAKFARILYVVNDILGDEDLAPA  60

Query  419  GLARLKQSFARFIDNRQQFPLVYDNVWKGVVSSASYATGDVGADFGNTLYNDHHFHYGYF  478
            GL +LK++FARF++N QQFPLVYD  W GVVSSA Y TGD GADFGNT YNDHHFHYGYF
Sbjct  61   GLTKLKEAFARFVNNTQQFPLVYDTKWGGVVSSAGY-TGDSGADFGNTYYNDHHFHYGYF  119

Query  479  IHAAAIIGSMDPQWLETSKDWVNMLVRDAGNSAGNDPLFPFSRGFDWFHGHSWAKGLFES  538
            ++AAA+IG +DP WL  +K WVN LVRD  N + +DP FP SR FDWFHGHSWAKGLFES
Sbjct  120  VYAAAVIGKLDPSWLAQNKAWVNTLVRDVANPSSDDPYFPVSRSFDWFHGHSWAKGLFES  179

Query  539  FDGKDEESTSEDAMFAYALKMWGKTIGDVSMEARGNLMLGILRRSMRNYFLMESNNKNHP  598
             DGKD+ES+SED   AYALK+WG  IGD +MEARGNLML I+ RS+  YFL +S+N   P
Sbjct  180  GDGKDQESSSEDYNAAYALKLWGLVIGDANMEARGNLMLAIMARSLNTYFLYKSDNTIQP  239

Query  599  ANFIANKVTGILFENKVDHTTYFGNNLEYIQG  630
            A FI NKV+GILFENK+DHTTYFG N EYIQG
Sbjct  240  AEFIGNKVSGILFENKIDHTTYFGTNPEYIQG  271


>CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 81.  Family 
of eukaryotic beta-1,3-glucanases. Within the Aspergillus 
fumigatus protein ENGL1, two perfectly conserved Glu residues 
(E550 or E554) have been proposed as putative nucleophiles 
of the active site of the Engl1 endoglucanase, while the 
proton donor would be D475. The endo-beta-1,3-glucanase activity 
is essential for efficient spore release.
Length=321

 Score = 469 bits (1209),  Expect = 4e-163, Method: Composition-based stats.
 Identities = 174/328 (53%), Positives = 218/328 (66%), Gaps = 10/328 (3%)

Query  26   HPVPKNGIVNTDTPVETNKFYCGLFLGTQTNNTFTHPYSVAWVKGGGTSQSYGMAISHVE  85
            HPVP +G+ N+ +P++TNKFY  LFLG QT   +THPYS+ W KGG    S+G+AISH E
Sbjct  1    HPVPPSGVSNSGSPIQTNKFYANLFLGDQTQPVWTHPYSLWWSKGG----SWGLAISHTE  56

Query  86   SNIVAHGPVNTAIPGSPISYYVNPIGIHSVILSASELGPSTVLTTENPLPFSANAVLRPS  145
            ++    GP      G P  YY NPIGI S++LSA+EL  ST LT  +   FS    L PS
Sbjct  57   ASQRVFGPDP---DGGPAQYYFNPIGIQSLVLSAAELSSSTTLTVSSLTDFSVTVNLSPS  113

Query  146  ASSSQSITIPVVQGMGFVTGIYSNLQPKIQSGVFFTKMVTAGSPRTGIFKYSLSLKDGTS  205
              SS SIT P+VQGMGFVT IY+NL P IQSGV F  +    SP++G+ KY ++L DG +
Sbjct  114  -GSSPSITFPLVQGMGFVTAIYNNLTPVIQSGVGFRSVTAGSSPKSGVTKYRVTLNDGQT  172

Query  206  WLLYATPDDGSDPQLQLASNSEIIGPAGWSGTIQVAKNPAGASG-EKFYDNSSGVYAVEG  264
            WLLYATP  GSD +L L  NS I+G   +SG IQ+AK P      E  YDN++GVY    
Sbjct  173  WLLYATPPSGSDLELTLVDNSTIVGSKPFSGIIQIAKLPGEDGESEAVYDNAAGVYPTGA  232

Query  265  AVMGSVS-ESTGTYSLMWAKAGKDAQNTPLLMFALPHHMESFDASTQSRATNITLRTTTK  323
             + GSVS  +TGTYS  + KAGK   + PLLMFALPHH+ESFD+ T +R T + L +TTK
Sbjct  233  TLSGSVSGGATGTYSFSYTKAGKSESSGPLLMFALPHHVESFDSDTAARVTGLKLDSTTK  292

Query  324  GQATAVIGEYWTMVEPELPISMGFAPWS  351
            G  TAV+G+ WTM EP LP+ +GF PWS
Sbjct  293  GVMTAVLGDSWTMEEPNLPVDIGFLPWS  320



Lambda      K        H        a         alpha
   0.316    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 852428620


Query= TCONS_00006735

Length=960
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461368 pfam04615, Utp14, Utp14 protein. This protein is found...  674     0.0  


>CDD:461368 pfam04615, Utp14, Utp14 protein.  This protein is found to be 
part of a large ribonucleoprotein complex containing the U3 
snoRNA. Depletion of the Utp proteins impedes production of 
the 18S rRNA, indicating that they are part of the active pre-rRNA 
processing complex. This large RNP complex has been 
termed the small subunit (SSU) processome.
Length=704

 Score = 674 bits (1740),  Expect = 0.0, Method: Composition-based stats.
 Identities = 347/746 (47%), Positives = 439/746 (59%), Gaps = 81/746 (11%)

Query  252  SKLQSFVNALEPESTNKPSRRAGGAQEHAKPTEYGLTSSRKLTVADLLPSI--TDSRLKS  309
             KL SF++ L+     K  +     +E  + +E+GLTS  KL++ADLL  +   DS LK 
Sbjct  1    DKLLSFISGLD--GKKKKRKLKDRTEEAGQESEFGLTSGGKLSLADLLLPLVKKDSSLKK  58

Query  310  SLKHVDATPSSHKQSSGIPGKLDAPLAKRQQDRLDRAAAYEKSKETLNRWLETVKANRRA  369
            SLK +        +      KL APL KRQQDRLDR AAYEK+KE L++W  TVK NRRA
Sbjct  59   SLKLL--------EKEKKSKKLAAPLPKRQQDRLDRKAAYEKTKEELDKWEPTVKRNRRA  110

Query  370  EHLMFPLPDPDAQQIHRIGPT----KPQTDLEATIHNILVESGLADPSGKSTEEQVQEFE  425
            EHL FPL  PD      + P     KP+T+LE  I +IL ESGLA+      E+++  FE
Sbjct  111  EHLSFPLQQPDTVGKSTLAPLASKFKPRTELEKKIASILEESGLAE------EKKLATFE  164

Query  426  ELQARKLPIEEIRARRAELRKQRDLLFREEVRAKRIKKIKSKSYRRVHRKERERLQQQER  485
            EL   KL +EE++ RRAELRK R+L+FREE +AKRIKKIKSK+YRR+HRKERE+  ++E 
Sbjct  165  ELALNKLSVEEVKERRAELRKMRELMFREEAKAKRIKKIKSKTYRRIHRKEREKEAEKEE  224

Query  486  QALLEAGVDLEEEDREMNERRRAEARMGAKLKD-SKWAKSLKQTGRTAWDEDARRGAAEQ  544
            +AL EA ++ +EE+RE  ER+RAE RM  K K+ SKWAKS+K+ GR AWDE+ R   AEQ
Sbjct  225  EALAEAALEDDEEEREKQERKRAEERMTLKHKNTSKWAKSMKKRGRAAWDEETRAALAEQ  284

Query  545  ALKEEELRRRIEGKSVSRADEDYLGSSSSESEDEDPWAEDAGSDAEKQKLRKKLEGLERD  604
              + EELRR+IEGK VS  D+D    SS          ED   +  K   RKKL  L+  
Sbjct  285  LRRGEELRRKIEGKDVSDDDDDSDDDSSDS--------EDEDDNDAKLVKRKKLGKLKEL  336

Query  605  DVDA-SEITGPHAKLFSMKFMQNAEAARKAENDAEIRRLNRELR-----GEEESQSEAES  658
            +  A  E  GP + L SMKFM+ AEA RK END EI  L REL        +E + E + 
Sbjct  337  EEKAEEEEEGPESGLLSMKFMKRAEARRKEENDEEIEELRRELEQGDEEDGDEEEEEEQG  396

Query  659  EVGRRKFGQSQDDKSGKDMKQKSLP------RTEFEEAPGSDDEADAAPDQEVGIVVNQF  712
             VGRR FG     KS K  K+KS        R EFEE    D E  A             
Sbjct  397  NVGRRVFGPGAKVKSLKSKKKKSDSKVDSSKREEFEEDKSKDLEDRAKKK----------  446

Query  713  NKKKSSERSGKPQSARPSGGAPEQKATTIEEENPWLVTKRNNRRATADDSQQIIDATLGA  772
              KKSS+ S K  S          +    +E NPWL   +  ++ ++      +D +   
Sbjct  447  KAKKSSKESKKLAS------EAASEEEADDESNPWLDESKTAKKTSSKVE-VFVDKSSSK  499

Query  773  ETVEAPKKQKDKPIVSSTLGQA-------------------EDDNGSDDEESVPVLLKNH  813
             T    K +K K   SS    +                   +DD+  ++E  +PV  K  
Sbjct  500  ATKSKNKIKKSKKKNSSKKKSSKDDALIDIDLSNTLKDESDDDDDDEEEEVDLPVAFKQR  559

Query  814  DLVKRAFAGDEVVQEFEQDKLETIEEEGDKVIDETLPGWGSWTGQGVSKREQRRQKKVLT  873
            DL+ RAFAGD+VV EFE++K   IEEE  K ID TLPGWGSW G GV KRE+++ +K L 
Sbjct  560  DLIARAFAGDDVVAEFEKEKKRVIEEEDPKEIDNTLPGWGSWAGDGVKKREKKK-RKFLK  618

Query  874  KVEGVKPENRKDAKLSRVIINEKRIRKNTKYMATQLPHPFETKAQYERSLRLPIGPEWST  933
            KVEGVK + RKDAKL  VIINEKR +KN KY+A+QLP PFE+K QYERSLR+PIGPEW+T
Sbjct  619  KVEGVKKKKRKDAKLKNVIINEKRDKKNAKYLASQLPFPFESKEQYERSLRMPIGPEWNT  678

Query  934  KETLQNATKPRVMIKQG-IIKPMEKP  958
            KET Q  TKPRV+ KQG IIKP++KP
Sbjct  679  KETFQKLTKPRVVTKQGVIIKPLKKP  704



Lambda      K        H        a         alpha
   0.305    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1223316864


Query= TCONS_00000652

Length=723
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 8...  683     0.0   
CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 8...  470     1e-162


>CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 81 C-terminal 
domain.  Family of eukaryotic beta-1,3-glucanases. Within 
the Aspergillus fumigatus protein, two perfectly conserved 
Glu residues (E550 or E554) have been proposed as putative 
nucleophiles of the active site of the Engl1 endoglucanase, 
while the proton donor would be D475. The endo-beta-1,3-glucanase 
activity is essential for efficient spore release. This 
entry represents the helical C-terminal domain.
Length=349

 Score = 683 bits (1766),  Expect = 0.0, Method: Composition-based stats.
 Identities = 233/352 (66%), Positives = 277/352 (79%), Gaps = 5/352 (1%)

Query  359  KISPAAQQVILAAAPTELQQDMDAQTNLNSMYFSGKALSKFATLLYTVDKLGGNSTLAAE  418
              S  A Q+I +AA  ELQQD+ AQ+NL+SMYFSGKAL+KFA +LY V+ + G+  LA  
Sbjct  1    GYSADALQLIASAANKELQQDISAQSNLDSMYFSGKALAKFARILYVVNDILGDEDLAPA  60

Query  419  GLARLKQSFARFIDNRQQFPLVYDNVWKGVVSSASYATGDVGADFGNTLYNDHHFHYGYF  478
            GL +LK++FARF++N QQFPLVYD  W GVVSSA Y TGD GADFGNT YNDHHFHYGYF
Sbjct  61   GLTKLKEAFARFVNNTQQFPLVYDTKWGGVVSSAGY-TGDSGADFGNTYYNDHHFHYGYF  119

Query  479  IHAAAIIGSMDPQWLETSKDWVNMLVRDAGNSAGNDPLFPFSRGFDWFHGHSWAKGLFES  538
            ++AAA+IG +DP WL  +K WVN LVRD  N + +DP FP SR FDWFHGHSWAKGLFES
Sbjct  120  VYAAAVIGKLDPSWLAQNKAWVNTLVRDVANPSSDDPYFPVSRSFDWFHGHSWAKGLFES  179

Query  539  FDGKDEESTSEDAMFAYALKMWGKTIGDVSMEARGNLMLGILRRSMRNYFLMESNNKNHP  598
             DGKD+ES+SED   AYALK+WG  IGD +MEARGNLML I+ RS+  YFL +S+N   P
Sbjct  180  GDGKDQESSSEDYNAAYALKLWGLVIGDANMEARGNLMLAIMARSLNTYFLYKSDNTIQP  239

Query  599  ANFIANKVTGILFENKVDHTTYFGNNLEYIQGIHMLPILPCSAFTRSKQFVKEEWDAMFA  658
            A FI NKV+GILFENK+DHTTYFG N EYIQGIHMLPI P S++ RS  FVKEEWDA F+
Sbjct  240  AEFIGNKVSGILFENKIDHTTYFGTNPEYIQGIHMLPITPISSYIRSPSFVKEEWDAKFS  299

Query  659  SNGPDPAENVVGGWKGVLYANLALVDPAASWNFFTQPNFDYSWIDGGASRTW  710
            +      +NV GGWKG+LYANLAL+DP A++ FF+ PNFD +W+DGGASRTW
Sbjct  300  NG----VDNVEGGWKGILYANLALIDPKAAYEFFSSPNFDLTWLDGGASRTW  347


>CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 81.  Family 
of eukaryotic beta-1,3-glucanases. Within the Aspergillus 
fumigatus protein ENGL1, two perfectly conserved Glu residues 
(E550 or E554) have been proposed as putative nucleophiles 
of the active site of the Engl1 endoglucanase, while the 
proton donor would be D475. The endo-beta-1,3-glucanase activity 
is essential for efficient spore release.
Length=321

 Score = 470 bits (1211),  Expect = 1e-162, Method: Composition-based stats.
 Identities = 174/328 (53%), Positives = 218/328 (66%), Gaps = 10/328 (3%)

Query  26   HPVPKNGIVNTDTPVETNKFYCGLFLGTQTNNTFTHPYSVAWVKGGGTSQSYGMAISHVE  85
            HPVP +G+ N+ +P++TNKFY  LFLG QT   +THPYS+ W KGG    S+G+AISH E
Sbjct  1    HPVPPSGVSNSGSPIQTNKFYANLFLGDQTQPVWTHPYSLWWSKGG----SWGLAISHTE  56

Query  86   SNIVAHGPVNTAIPGSPISYYVNPIGIHSVILSASELGPSTVLTTENPLPFSANAVLRPS  145
            ++    GP      G P  YY NPIGI S++LSA+EL  ST LT  +   FS    L PS
Sbjct  57   ASQRVFGPDP---DGGPAQYYFNPIGIQSLVLSAAELSSSTTLTVSSLTDFSVTVNLSPS  113

Query  146  ASSSQSITIPVVQGMGFVTGIYSNLQPKIQSGVFFTKMVTAGSPRTGIFKYSLSLKDGTS  205
              SS SIT P+VQGMGFVT IY+NL P IQSGV F  +    SP++G+ KY ++L DG +
Sbjct  114  -GSSPSITFPLVQGMGFVTAIYNNLTPVIQSGVGFRSVTAGSSPKSGVTKYRVTLNDGQT  172

Query  206  WLLYATPDDGSDPQLQLASNSEIIGPAGWSGTIQVAKNPAGASG-EKFYDNSSGVYAVEG  264
            WLLYATP  GSD +L L  NS I+G   +SG IQ+AK P      E  YDN++GVY    
Sbjct  173  WLLYATPPSGSDLELTLVDNSTIVGSKPFSGIIQIAKLPGEDGESEAVYDNAAGVYPTGA  232

Query  265  AVMGSVS-ESTGTYSLMWAKAGKDAQNTPLLMFALPHHMESFDASTQSRATNITLRTTTK  323
             + GSVS  +TGTYS  + KAGK   + PLLMFALPHH+ESFD+ T +R T + L +TTK
Sbjct  233  TLSGSVSGGATGTYSFSYTKAGKSESSGPLLMFALPHHVESFDSDTAARVTGLKLDSTTK  292

Query  324  GQATAVIGEYWTMVEPELPISMGFAPWS  351
            G  TAV+G+ WTM EP LP+ +GF PWS
Sbjct  293  GVMTAVLGDSWTMEEPNLPVDIGFLPWS  320



Lambda      K        H        a         alpha
   0.316    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 915290608


Query= TCONS_00006736

Length=960
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461368 pfam04615, Utp14, Utp14 protein. This protein is found...  674     0.0  


>CDD:461368 pfam04615, Utp14, Utp14 protein.  This protein is found to be 
part of a large ribonucleoprotein complex containing the U3 
snoRNA. Depletion of the Utp proteins impedes production of 
the 18S rRNA, indicating that they are part of the active pre-rRNA 
processing complex. This large RNP complex has been 
termed the small subunit (SSU) processome.
Length=704

 Score = 674 bits (1740),  Expect = 0.0, Method: Composition-based stats.
 Identities = 347/746 (47%), Positives = 439/746 (59%), Gaps = 81/746 (11%)

Query  252  SKLQSFVNALEPESTNKPSRRAGGAQEHAKPTEYGLTSSRKLTVADLLPSI--TDSRLKS  309
             KL SF++ L+     K  +     +E  + +E+GLTS  KL++ADLL  +   DS LK 
Sbjct  1    DKLLSFISGLD--GKKKKRKLKDRTEEAGQESEFGLTSGGKLSLADLLLPLVKKDSSLKK  58

Query  310  SLKHVDATPSSHKQSSGIPGKLDAPLAKRQQDRLDRAAAYEKSKETLNRWLETVKANRRA  369
            SLK +        +      KL APL KRQQDRLDR AAYEK+KE L++W  TVK NRRA
Sbjct  59   SLKLL--------EKEKKSKKLAAPLPKRQQDRLDRKAAYEKTKEELDKWEPTVKRNRRA  110

Query  370  EHLMFPLPDPDAQQIHRIGPT----KPQTDLEATIHNILVESGLADPSGKSTEEQVQEFE  425
            EHL FPL  PD      + P     KP+T+LE  I +IL ESGLA+      E+++  FE
Sbjct  111  EHLSFPLQQPDTVGKSTLAPLASKFKPRTELEKKIASILEESGLAE------EKKLATFE  164

Query  426  ELQARKLPIEEIRARRAELRKQRDLLFREEVRAKRIKKIKSKSYRRVHRKERERLQQQER  485
            EL   KL +EE++ RRAELRK R+L+FREE +AKRIKKIKSK+YRR+HRKERE+  ++E 
Sbjct  165  ELALNKLSVEEVKERRAELRKMRELMFREEAKAKRIKKIKSKTYRRIHRKEREKEAEKEE  224

Query  486  QALLEAGVDLEEEDREMNERRRAEARMGAKLKD-SKWAKSLKQTGRTAWDEDARRGAAEQ  544
            +AL EA ++ +EE+RE  ER+RAE RM  K K+ SKWAKS+K+ GR AWDE+ R   AEQ
Sbjct  225  EALAEAALEDDEEEREKQERKRAEERMTLKHKNTSKWAKSMKKRGRAAWDEETRAALAEQ  284

Query  545  ALKEEELRRRIEGKSVSRADEDYLGSSSSESEDEDPWAEDAGSDAEKQKLRKKLEGLERD  604
              + EELRR+IEGK VS  D+D    SS          ED   +  K   RKKL  L+  
Sbjct  285  LRRGEELRRKIEGKDVSDDDDDSDDDSSDS--------EDEDDNDAKLVKRKKLGKLKEL  336

Query  605  DVDA-SEITGPHAKLFSMKFMQNAEAARKAENDAEIRRLNRELR-----GEEESQSEAES  658
            +  A  E  GP + L SMKFM+ AEA RK END EI  L REL        +E + E + 
Sbjct  337  EEKAEEEEEGPESGLLSMKFMKRAEARRKEENDEEIEELRRELEQGDEEDGDEEEEEEQG  396

Query  659  EVGRRKFGQSQDDKSGKDMKQKSLP------RTEFEEAPGSDDEADAAPDQEVGIVVNQF  712
             VGRR FG     KS K  K+KS        R EFEE    D E  A             
Sbjct  397  NVGRRVFGPGAKVKSLKSKKKKSDSKVDSSKREEFEEDKSKDLEDRAKKK----------  446

Query  713  NKKKSSERSGKPQSARPSGGAPEQKATTIEEENPWLVTKRNNRRATADDSQQIIDATLGA  772
              KKSS+ S K  S          +    +E NPWL   +  ++ ++      +D +   
Sbjct  447  KAKKSSKESKKLAS------EAASEEEADDESNPWLDESKTAKKTSSKVE-VFVDKSSSK  499

Query  773  ETVEAPKKQKDKPIVSSTLGQA-------------------EDDNGSDDEESVPVLLKNH  813
             T    K +K K   SS    +                   +DD+  ++E  +PV  K  
Sbjct  500  ATKSKNKIKKSKKKNSSKKKSSKDDALIDIDLSNTLKDESDDDDDDEEEEVDLPVAFKQR  559

Query  814  DLVKRAFAGDEVVQEFEQDKLETIEEEGDKVIDETLPGWGSWTGQGVSKREQRRQKKVLT  873
            DL+ RAFAGD+VV EFE++K   IEEE  K ID TLPGWGSW G GV KRE+++ +K L 
Sbjct  560  DLIARAFAGDDVVAEFEKEKKRVIEEEDPKEIDNTLPGWGSWAGDGVKKREKKK-RKFLK  618

Query  874  KVEGVKPENRKDAKLSRVIINEKRIRKNTKYMATQLPHPFETKAQYERSLRLPIGPEWST  933
            KVEGVK + RKDAKL  VIINEKR +KN KY+A+QLP PFE+K QYERSLR+PIGPEW+T
Sbjct  619  KVEGVKKKKRKDAKLKNVIINEKRDKKNAKYLASQLPFPFESKEQYERSLRMPIGPEWNT  678

Query  934  KETLQNATKPRVMIKQG-IIKPMEKP  958
            KET Q  TKPRV+ KQG IIKP++KP
Sbjct  679  KETFQKLTKPRVVTKQGVIIKPLKKP  704



Lambda      K        H        a         alpha
   0.305    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1223316864


Query= TCONS_00000654

Length=723
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 8...  683     0.0   
CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 8...  470     1e-162


>CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 81 C-terminal 
domain.  Family of eukaryotic beta-1,3-glucanases. Within 
the Aspergillus fumigatus protein, two perfectly conserved 
Glu residues (E550 or E554) have been proposed as putative 
nucleophiles of the active site of the Engl1 endoglucanase, 
while the proton donor would be D475. The endo-beta-1,3-glucanase 
activity is essential for efficient spore release. This 
entry represents the helical C-terminal domain.
Length=349

 Score = 683 bits (1766),  Expect = 0.0, Method: Composition-based stats.
 Identities = 233/352 (66%), Positives = 277/352 (79%), Gaps = 5/352 (1%)

Query  359  KISPAAQQVILAAAPTELQQDMDAQTNLNSMYFSGKALSKFATLLYTVDKLGGNSTLAAE  418
              S  A Q+I +AA  ELQQD+ AQ+NL+SMYFSGKAL+KFA +LY V+ + G+  LA  
Sbjct  1    GYSADALQLIASAANKELQQDISAQSNLDSMYFSGKALAKFARILYVVNDILGDEDLAPA  60

Query  419  GLARLKQSFARFIDNRQQFPLVYDNVWKGVVSSASYATGDVGADFGNTLYNDHHFHYGYF  478
            GL +LK++FARF++N QQFPLVYD  W GVVSSA Y TGD GADFGNT YNDHHFHYGYF
Sbjct  61   GLTKLKEAFARFVNNTQQFPLVYDTKWGGVVSSAGY-TGDSGADFGNTYYNDHHFHYGYF  119

Query  479  IHAAAIIGSMDPQWLETSKDWVNMLVRDAGNSAGNDPLFPFSRGFDWFHGHSWAKGLFES  538
            ++AAA+IG +DP WL  +K WVN LVRD  N + +DP FP SR FDWFHGHSWAKGLFES
Sbjct  120  VYAAAVIGKLDPSWLAQNKAWVNTLVRDVANPSSDDPYFPVSRSFDWFHGHSWAKGLFES  179

Query  539  FDGKDEESTSEDAMFAYALKMWGKTIGDVSMEARGNLMLGILRRSMRNYFLMESNNKNHP  598
             DGKD+ES+SED   AYALK+WG  IGD +MEARGNLML I+ RS+  YFL +S+N   P
Sbjct  180  GDGKDQESSSEDYNAAYALKLWGLVIGDANMEARGNLMLAIMARSLNTYFLYKSDNTIQP  239

Query  599  ANFIANKVTGILFENKVDHTTYFGNNLEYIQGIHMLPILPCSAFTRSKQFVKEEWDAMFA  658
            A FI NKV+GILFENK+DHTTYFG N EYIQGIHMLPI P S++ RS  FVKEEWDA F+
Sbjct  240  AEFIGNKVSGILFENKIDHTTYFGTNPEYIQGIHMLPITPISSYIRSPSFVKEEWDAKFS  299

Query  659  SNGPDPAENVVGGWKGVLYANLALVDPAASWNFFTQPNFDYSWIDGGASRTW  710
            +      +NV GGWKG+LYANLAL+DP A++ FF+ PNFD +W+DGGASRTW
Sbjct  300  NG----VDNVEGGWKGILYANLALIDPKAAYEFFSSPNFDLTWLDGGASRTW  347


>CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 81.  Family 
of eukaryotic beta-1,3-glucanases. Within the Aspergillus 
fumigatus protein ENGL1, two perfectly conserved Glu residues 
(E550 or E554) have been proposed as putative nucleophiles 
of the active site of the Engl1 endoglucanase, while the 
proton donor would be D475. The endo-beta-1,3-glucanase activity 
is essential for efficient spore release.
Length=321

 Score = 470 bits (1211),  Expect = 1e-162, Method: Composition-based stats.
 Identities = 174/328 (53%), Positives = 218/328 (66%), Gaps = 10/328 (3%)

Query  26   HPVPKNGIVNTDTPVETNKFYCGLFLGTQTNNTFTHPYSVAWVKGGGTSQSYGMAISHVE  85
            HPVP +G+ N+ +P++TNKFY  LFLG QT   +THPYS+ W KGG    S+G+AISH E
Sbjct  1    HPVPPSGVSNSGSPIQTNKFYANLFLGDQTQPVWTHPYSLWWSKGG----SWGLAISHTE  56

Query  86   SNIVAHGPVNTAIPGSPISYYVNPIGIHSVILSASELGPSTVLTTENPLPFSANAVLRPS  145
            ++    GP      G P  YY NPIGI S++LSA+EL  ST LT  +   FS    L PS
Sbjct  57   ASQRVFGPDP---DGGPAQYYFNPIGIQSLVLSAAELSSSTTLTVSSLTDFSVTVNLSPS  113

Query  146  ASSSQSITIPVVQGMGFVTGIYSNLQPKIQSGVFFTKMVTAGSPRTGIFKYSLSLKDGTS  205
              SS SIT P+VQGMGFVT IY+NL P IQSGV F  +    SP++G+ KY ++L DG +
Sbjct  114  -GSSPSITFPLVQGMGFVTAIYNNLTPVIQSGVGFRSVTAGSSPKSGVTKYRVTLNDGQT  172

Query  206  WLLYATPDDGSDPQLQLASNSEIIGPAGWSGTIQVAKNPAGASG-EKFYDNSSGVYAVEG  264
            WLLYATP  GSD +L L  NS I+G   +SG IQ+AK P      E  YDN++GVY    
Sbjct  173  WLLYATPPSGSDLELTLVDNSTIVGSKPFSGIIQIAKLPGEDGESEAVYDNAAGVYPTGA  232

Query  265  AVMGSVS-ESTGTYSLMWAKAGKDAQNTPLLMFALPHHMESFDASTQSRATNITLRTTTK  323
             + GSVS  +TGTYS  + KAGK   + PLLMFALPHH+ESFD+ T +R T + L +TTK
Sbjct  233  TLSGSVSGGATGTYSFSYTKAGKSESSGPLLMFALPHHVESFDSDTAARVTGLKLDSTTK  292

Query  324  GQATAVIGEYWTMVEPELPISMGFAPWS  351
            G  TAV+G+ WTM EP LP+ +GF PWS
Sbjct  293  GVMTAVLGDSWTMEEPNLPVDIGFLPWS  320



Lambda      K        H        a         alpha
   0.316    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 915290608


Query= TCONS_00006737

Length=960
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461368 pfam04615, Utp14, Utp14 protein. This protein is found...  674     0.0  


>CDD:461368 pfam04615, Utp14, Utp14 protein.  This protein is found to be 
part of a large ribonucleoprotein complex containing the U3 
snoRNA. Depletion of the Utp proteins impedes production of 
the 18S rRNA, indicating that they are part of the active pre-rRNA 
processing complex. This large RNP complex has been 
termed the small subunit (SSU) processome.
Length=704

 Score = 674 bits (1740),  Expect = 0.0, Method: Composition-based stats.
 Identities = 347/746 (47%), Positives = 439/746 (59%), Gaps = 81/746 (11%)

Query  252  SKLQSFVNALEPESTNKPSRRAGGAQEHAKPTEYGLTSSRKLTVADLLPSI--TDSRLKS  309
             KL SF++ L+     K  +     +E  + +E+GLTS  KL++ADLL  +   DS LK 
Sbjct  1    DKLLSFISGLD--GKKKKRKLKDRTEEAGQESEFGLTSGGKLSLADLLLPLVKKDSSLKK  58

Query  310  SLKHVDATPSSHKQSSGIPGKLDAPLAKRQQDRLDRAAAYEKSKETLNRWLETVKANRRA  369
            SLK +        +      KL APL KRQQDRLDR AAYEK+KE L++W  TVK NRRA
Sbjct  59   SLKLL--------EKEKKSKKLAAPLPKRQQDRLDRKAAYEKTKEELDKWEPTVKRNRRA  110

Query  370  EHLMFPLPDPDAQQIHRIGPT----KPQTDLEATIHNILVESGLADPSGKSTEEQVQEFE  425
            EHL FPL  PD      + P     KP+T+LE  I +IL ESGLA+      E+++  FE
Sbjct  111  EHLSFPLQQPDTVGKSTLAPLASKFKPRTELEKKIASILEESGLAE------EKKLATFE  164

Query  426  ELQARKLPIEEIRARRAELRKQRDLLFREEVRAKRIKKIKSKSYRRVHRKERERLQQQER  485
            EL   KL +EE++ RRAELRK R+L+FREE +AKRIKKIKSK+YRR+HRKERE+  ++E 
Sbjct  165  ELALNKLSVEEVKERRAELRKMRELMFREEAKAKRIKKIKSKTYRRIHRKEREKEAEKEE  224

Query  486  QALLEAGVDLEEEDREMNERRRAEARMGAKLKD-SKWAKSLKQTGRTAWDEDARRGAAEQ  544
            +AL EA ++ +EE+RE  ER+RAE RM  K K+ SKWAKS+K+ GR AWDE+ R   AEQ
Sbjct  225  EALAEAALEDDEEEREKQERKRAEERMTLKHKNTSKWAKSMKKRGRAAWDEETRAALAEQ  284

Query  545  ALKEEELRRRIEGKSVSRADEDYLGSSSSESEDEDPWAEDAGSDAEKQKLRKKLEGLERD  604
              + EELRR+IEGK VS  D+D    SS          ED   +  K   RKKL  L+  
Sbjct  285  LRRGEELRRKIEGKDVSDDDDDSDDDSSDS--------EDEDDNDAKLVKRKKLGKLKEL  336

Query  605  DVDA-SEITGPHAKLFSMKFMQNAEAARKAENDAEIRRLNRELR-----GEEESQSEAES  658
            +  A  E  GP + L SMKFM+ AEA RK END EI  L REL        +E + E + 
Sbjct  337  EEKAEEEEEGPESGLLSMKFMKRAEARRKEENDEEIEELRRELEQGDEEDGDEEEEEEQG  396

Query  659  EVGRRKFGQSQDDKSGKDMKQKSLP------RTEFEEAPGSDDEADAAPDQEVGIVVNQF  712
             VGRR FG     KS K  K+KS        R EFEE    D E  A             
Sbjct  397  NVGRRVFGPGAKVKSLKSKKKKSDSKVDSSKREEFEEDKSKDLEDRAKKK----------  446

Query  713  NKKKSSERSGKPQSARPSGGAPEQKATTIEEENPWLVTKRNNRRATADDSQQIIDATLGA  772
              KKSS+ S K  S          +    +E NPWL   +  ++ ++      +D +   
Sbjct  447  KAKKSSKESKKLAS------EAASEEEADDESNPWLDESKTAKKTSSKVE-VFVDKSSSK  499

Query  773  ETVEAPKKQKDKPIVSSTLGQA-------------------EDDNGSDDEESVPVLLKNH  813
             T    K +K K   SS    +                   +DD+  ++E  +PV  K  
Sbjct  500  ATKSKNKIKKSKKKNSSKKKSSKDDALIDIDLSNTLKDESDDDDDDEEEEVDLPVAFKQR  559

Query  814  DLVKRAFAGDEVVQEFEQDKLETIEEEGDKVIDETLPGWGSWTGQGVSKREQRRQKKVLT  873
            DL+ RAFAGD+VV EFE++K   IEEE  K ID TLPGWGSW G GV KRE+++ +K L 
Sbjct  560  DLIARAFAGDDVVAEFEKEKKRVIEEEDPKEIDNTLPGWGSWAGDGVKKREKKK-RKFLK  618

Query  874  KVEGVKPENRKDAKLSRVIINEKRIRKNTKYMATQLPHPFETKAQYERSLRLPIGPEWST  933
            KVEGVK + RKDAKL  VIINEKR +KN KY+A+QLP PFE+K QYERSLR+PIGPEW+T
Sbjct  619  KVEGVKKKKRKDAKLKNVIINEKRDKKNAKYLASQLPFPFESKEQYERSLRMPIGPEWNT  678

Query  934  KETLQNATKPRVMIKQG-IIKPMEKP  958
            KET Q  TKPRV+ KQG IIKP++KP
Sbjct  679  KETFQKLTKPRVVTKQGVIIKPLKKP  704



Lambda      K        H        a         alpha
   0.305    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1223316864


Query= TCONS_00006739

Length=960
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461368 pfam04615, Utp14, Utp14 protein. This protein is found...  674     0.0  


>CDD:461368 pfam04615, Utp14, Utp14 protein.  This protein is found to be 
part of a large ribonucleoprotein complex containing the U3 
snoRNA. Depletion of the Utp proteins impedes production of 
the 18S rRNA, indicating that they are part of the active pre-rRNA 
processing complex. This large RNP complex has been 
termed the small subunit (SSU) processome.
Length=704

 Score = 674 bits (1740),  Expect = 0.0, Method: Composition-based stats.
 Identities = 347/746 (47%), Positives = 439/746 (59%), Gaps = 81/746 (11%)

Query  252  SKLQSFVNALEPESTNKPSRRAGGAQEHAKPTEYGLTSSRKLTVADLLPSI--TDSRLKS  309
             KL SF++ L+     K  +     +E  + +E+GLTS  KL++ADLL  +   DS LK 
Sbjct  1    DKLLSFISGLD--GKKKKRKLKDRTEEAGQESEFGLTSGGKLSLADLLLPLVKKDSSLKK  58

Query  310  SLKHVDATPSSHKQSSGIPGKLDAPLAKRQQDRLDRAAAYEKSKETLNRWLETVKANRRA  369
            SLK +        +      KL APL KRQQDRLDR AAYEK+KE L++W  TVK NRRA
Sbjct  59   SLKLL--------EKEKKSKKLAAPLPKRQQDRLDRKAAYEKTKEELDKWEPTVKRNRRA  110

Query  370  EHLMFPLPDPDAQQIHRIGPT----KPQTDLEATIHNILVESGLADPSGKSTEEQVQEFE  425
            EHL FPL  PD      + P     KP+T+LE  I +IL ESGLA+      E+++  FE
Sbjct  111  EHLSFPLQQPDTVGKSTLAPLASKFKPRTELEKKIASILEESGLAE------EKKLATFE  164

Query  426  ELQARKLPIEEIRARRAELRKQRDLLFREEVRAKRIKKIKSKSYRRVHRKERERLQQQER  485
            EL   KL +EE++ RRAELRK R+L+FREE +AKRIKKIKSK+YRR+HRKERE+  ++E 
Sbjct  165  ELALNKLSVEEVKERRAELRKMRELMFREEAKAKRIKKIKSKTYRRIHRKEREKEAEKEE  224

Query  486  QALLEAGVDLEEEDREMNERRRAEARMGAKLKD-SKWAKSLKQTGRTAWDEDARRGAAEQ  544
            +AL EA ++ +EE+RE  ER+RAE RM  K K+ SKWAKS+K+ GR AWDE+ R   AEQ
Sbjct  225  EALAEAALEDDEEEREKQERKRAEERMTLKHKNTSKWAKSMKKRGRAAWDEETRAALAEQ  284

Query  545  ALKEEELRRRIEGKSVSRADEDYLGSSSSESEDEDPWAEDAGSDAEKQKLRKKLEGLERD  604
              + EELRR+IEGK VS  D+D    SS          ED   +  K   RKKL  L+  
Sbjct  285  LRRGEELRRKIEGKDVSDDDDDSDDDSSDS--------EDEDDNDAKLVKRKKLGKLKEL  336

Query  605  DVDA-SEITGPHAKLFSMKFMQNAEAARKAENDAEIRRLNRELR-----GEEESQSEAES  658
            +  A  E  GP + L SMKFM+ AEA RK END EI  L REL        +E + E + 
Sbjct  337  EEKAEEEEEGPESGLLSMKFMKRAEARRKEENDEEIEELRRELEQGDEEDGDEEEEEEQG  396

Query  659  EVGRRKFGQSQDDKSGKDMKQKSLP------RTEFEEAPGSDDEADAAPDQEVGIVVNQF  712
             VGRR FG     KS K  K+KS        R EFEE    D E  A             
Sbjct  397  NVGRRVFGPGAKVKSLKSKKKKSDSKVDSSKREEFEEDKSKDLEDRAKKK----------  446

Query  713  NKKKSSERSGKPQSARPSGGAPEQKATTIEEENPWLVTKRNNRRATADDSQQIIDATLGA  772
              KKSS+ S K  S          +    +E NPWL   +  ++ ++      +D +   
Sbjct  447  KAKKSSKESKKLAS------EAASEEEADDESNPWLDESKTAKKTSSKVE-VFVDKSSSK  499

Query  773  ETVEAPKKQKDKPIVSSTLGQA-------------------EDDNGSDDEESVPVLLKNH  813
             T    K +K K   SS    +                   +DD+  ++E  +PV  K  
Sbjct  500  ATKSKNKIKKSKKKNSSKKKSSKDDALIDIDLSNTLKDESDDDDDDEEEEVDLPVAFKQR  559

Query  814  DLVKRAFAGDEVVQEFEQDKLETIEEEGDKVIDETLPGWGSWTGQGVSKREQRRQKKVLT  873
            DL+ RAFAGD+VV EFE++K   IEEE  K ID TLPGWGSW G GV KRE+++ +K L 
Sbjct  560  DLIARAFAGDDVVAEFEKEKKRVIEEEDPKEIDNTLPGWGSWAGDGVKKREKKK-RKFLK  618

Query  874  KVEGVKPENRKDAKLSRVIINEKRIRKNTKYMATQLPHPFETKAQYERSLRLPIGPEWST  933
            KVEGVK + RKDAKL  VIINEKR +KN KY+A+QLP PFE+K QYERSLR+PIGPEW+T
Sbjct  619  KVEGVKKKKRKDAKLKNVIINEKRDKKNAKYLASQLPFPFESKEQYERSLRMPIGPEWNT  678

Query  934  KETLQNATKPRVMIKQG-IIKPMEKP  958
            KET Q  TKPRV+ KQG IIKP++KP
Sbjct  679  KETFQKLTKPRVVTKQGVIIKPLKKP  704



Lambda      K        H        a         alpha
   0.305    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1223316864


Query= TCONS_00000656

Length=671
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 8...  539     0.0   
CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 8...  469     4e-163


>CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 81 C-terminal 
domain.  Family of eukaryotic beta-1,3-glucanases. Within 
the Aspergillus fumigatus protein, two perfectly conserved 
Glu residues (E550 or E554) have been proposed as putative 
nucleophiles of the active site of the Engl1 endoglucanase, 
while the proton donor would be D475. The endo-beta-1,3-glucanase 
activity is essential for efficient spore release. This 
entry represents the helical C-terminal domain.
Length=349

 Score = 539 bits (1392),  Expect = 0.0, Method: Composition-based stats.
 Identities = 182/272 (67%), Positives = 214/272 (79%), Gaps = 1/272 (0%)

Query  359  KISPAAQQVILAAAPTELQQDMDAQTNLNSMYFSGKALSKFATLLYTVDKLGGNSTLAAE  418
              S  A Q+I +AA  ELQQD+ AQ+NL+SMYFSGKAL+KFA +LY V+ + G+  LA  
Sbjct  1    GYSADALQLIASAANKELQQDISAQSNLDSMYFSGKALAKFARILYVVNDILGDEDLAPA  60

Query  419  GLARLKQSFARFIDNRQQFPLVYDNVWKGVVSSASYATGDVGADFGNTLYNDHHFHYGYF  478
            GL +LK++FARF++N QQFPLVYD  W GVVSSA Y TGD GADFGNT YNDHHFHYGYF
Sbjct  61   GLTKLKEAFARFVNNTQQFPLVYDTKWGGVVSSAGY-TGDSGADFGNTYYNDHHFHYGYF  119

Query  479  IHAAAIIGSMDPQWLETSKDWVNMLVRDAGNSAGNDPLFPFSRGFDWFHGHSWAKGLFES  538
            ++AAA+IG +DP WL  +K WVN LVRD  N + +DP FP SR FDWFHGHSWAKGLFES
Sbjct  120  VYAAAVIGKLDPSWLAQNKAWVNTLVRDVANPSSDDPYFPVSRSFDWFHGHSWAKGLFES  179

Query  539  FDGKDEESTSEDAMFAYALKMWGKTIGDVSMEARGNLMLGILRRSMRNYFLMESNNKNHP  598
             DGKD+ES+SED   AYALK+WG  IGD +MEARGNLML I+ RS+  YFL +S+N   P
Sbjct  180  GDGKDQESSSEDYNAAYALKLWGLVIGDANMEARGNLMLAIMARSLNTYFLYKSDNTIQP  239

Query  599  ANFIANKVTGILFENKVDHTTYFGNNLEYIQG  630
            A FI NKV+GILFENK+DHTTYFG N EYIQG
Sbjct  240  AEFIGNKVSGILFENKIDHTTYFGTNPEYIQG  271


>CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 81.  Family 
of eukaryotic beta-1,3-glucanases. Within the Aspergillus 
fumigatus protein ENGL1, two perfectly conserved Glu residues 
(E550 or E554) have been proposed as putative nucleophiles 
of the active site of the Engl1 endoglucanase, while the 
proton donor would be D475. The endo-beta-1,3-glucanase activity 
is essential for efficient spore release.
Length=321

 Score = 469 bits (1209),  Expect = 4e-163, Method: Composition-based stats.
 Identities = 174/328 (53%), Positives = 218/328 (66%), Gaps = 10/328 (3%)

Query  26   HPVPKNGIVNTDTPVETNKFYCGLFLGTQTNNTFTHPYSVAWVKGGGTSQSYGMAISHVE  85
            HPVP +G+ N+ +P++TNKFY  LFLG QT   +THPYS+ W KGG    S+G+AISH E
Sbjct  1    HPVPPSGVSNSGSPIQTNKFYANLFLGDQTQPVWTHPYSLWWSKGG----SWGLAISHTE  56

Query  86   SNIVAHGPVNTAIPGSPISYYVNPIGIHSVILSASELGPSTVLTTENPLPFSANAVLRPS  145
            ++    GP      G P  YY NPIGI S++LSA+EL  ST LT  +   FS    L PS
Sbjct  57   ASQRVFGPDP---DGGPAQYYFNPIGIQSLVLSAAELSSSTTLTVSSLTDFSVTVNLSPS  113

Query  146  ASSSQSITIPVVQGMGFVTGIYSNLQPKIQSGVFFTKMVTAGSPRTGIFKYSLSLKDGTS  205
              SS SIT P+VQGMGFVT IY+NL P IQSGV F  +    SP++G+ KY ++L DG +
Sbjct  114  -GSSPSITFPLVQGMGFVTAIYNNLTPVIQSGVGFRSVTAGSSPKSGVTKYRVTLNDGQT  172

Query  206  WLLYATPDDGSDPQLQLASNSEIIGPAGWSGTIQVAKNPAGASG-EKFYDNSSGVYAVEG  264
            WLLYATP  GSD +L L  NS I+G   +SG IQ+AK P      E  YDN++GVY    
Sbjct  173  WLLYATPPSGSDLELTLVDNSTIVGSKPFSGIIQIAKLPGEDGESEAVYDNAAGVYPTGA  232

Query  265  AVMGSVS-ESTGTYSLMWAKAGKDAQNTPLLMFALPHHMESFDASTQSRATNITLRTTTK  323
             + GSVS  +TGTYS  + KAGK   + PLLMFALPHH+ESFD+ T +R T + L +TTK
Sbjct  233  TLSGSVSGGATGTYSFSYTKAGKSESSGPLLMFALPHHVESFDSDTAARVTGLKLDSTTK  292

Query  324  GQATAVIGEYWTMVEPELPISMGFAPWS  351
            G  TAV+G+ WTM EP LP+ +GF PWS
Sbjct  293  GVMTAVLGDSWTMEEPNLPVDIGFLPWS  320



Lambda      K        H        a         alpha
   0.316    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 852428620


Query= TCONS_00000655

Length=671
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 8...  539     0.0   
CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 8...  469     4e-163


>CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 81 C-terminal 
domain.  Family of eukaryotic beta-1,3-glucanases. Within 
the Aspergillus fumigatus protein, two perfectly conserved 
Glu residues (E550 or E554) have been proposed as putative 
nucleophiles of the active site of the Engl1 endoglucanase, 
while the proton donor would be D475. The endo-beta-1,3-glucanase 
activity is essential for efficient spore release. This 
entry represents the helical C-terminal domain.
Length=349

 Score = 539 bits (1392),  Expect = 0.0, Method: Composition-based stats.
 Identities = 182/272 (67%), Positives = 214/272 (79%), Gaps = 1/272 (0%)

Query  359  KISPAAQQVILAAAPTELQQDMDAQTNLNSMYFSGKALSKFATLLYTVDKLGGNSTLAAE  418
              S  A Q+I +AA  ELQQD+ AQ+NL+SMYFSGKAL+KFA +LY V+ + G+  LA  
Sbjct  1    GYSADALQLIASAANKELQQDISAQSNLDSMYFSGKALAKFARILYVVNDILGDEDLAPA  60

Query  419  GLARLKQSFARFIDNRQQFPLVYDNVWKGVVSSASYATGDVGADFGNTLYNDHHFHYGYF  478
            GL +LK++FARF++N QQFPLVYD  W GVVSSA Y TGD GADFGNT YNDHHFHYGYF
Sbjct  61   GLTKLKEAFARFVNNTQQFPLVYDTKWGGVVSSAGY-TGDSGADFGNTYYNDHHFHYGYF  119

Query  479  IHAAAIIGSMDPQWLETSKDWVNMLVRDAGNSAGNDPLFPFSRGFDWFHGHSWAKGLFES  538
            ++AAA+IG +DP WL  +K WVN LVRD  N + +DP FP SR FDWFHGHSWAKGLFES
Sbjct  120  VYAAAVIGKLDPSWLAQNKAWVNTLVRDVANPSSDDPYFPVSRSFDWFHGHSWAKGLFES  179

Query  539  FDGKDEESTSEDAMFAYALKMWGKTIGDVSMEARGNLMLGILRRSMRNYFLMESNNKNHP  598
             DGKD+ES+SED   AYALK+WG  IGD +MEARGNLML I+ RS+  YFL +S+N   P
Sbjct  180  GDGKDQESSSEDYNAAYALKLWGLVIGDANMEARGNLMLAIMARSLNTYFLYKSDNTIQP  239

Query  599  ANFIANKVTGILFENKVDHTTYFGNNLEYIQG  630
            A FI NKV+GILFENK+DHTTYFG N EYIQG
Sbjct  240  AEFIGNKVSGILFENKIDHTTYFGTNPEYIQG  271


>CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 81.  Family 
of eukaryotic beta-1,3-glucanases. Within the Aspergillus 
fumigatus protein ENGL1, two perfectly conserved Glu residues 
(E550 or E554) have been proposed as putative nucleophiles 
of the active site of the Engl1 endoglucanase, while the 
proton donor would be D475. The endo-beta-1,3-glucanase activity 
is essential for efficient spore release.
Length=321

 Score = 469 bits (1209),  Expect = 4e-163, Method: Composition-based stats.
 Identities = 174/328 (53%), Positives = 218/328 (66%), Gaps = 10/328 (3%)

Query  26   HPVPKNGIVNTDTPVETNKFYCGLFLGTQTNNTFTHPYSVAWVKGGGTSQSYGMAISHVE  85
            HPVP +G+ N+ +P++TNKFY  LFLG QT   +THPYS+ W KGG    S+G+AISH E
Sbjct  1    HPVPPSGVSNSGSPIQTNKFYANLFLGDQTQPVWTHPYSLWWSKGG----SWGLAISHTE  56

Query  86   SNIVAHGPVNTAIPGSPISYYVNPIGIHSVILSASELGPSTVLTTENPLPFSANAVLRPS  145
            ++    GP      G P  YY NPIGI S++LSA+EL  ST LT  +   FS    L PS
Sbjct  57   ASQRVFGPDP---DGGPAQYYFNPIGIQSLVLSAAELSSSTTLTVSSLTDFSVTVNLSPS  113

Query  146  ASSSQSITIPVVQGMGFVTGIYSNLQPKIQSGVFFTKMVTAGSPRTGIFKYSLSLKDGTS  205
              SS SIT P+VQGMGFVT IY+NL P IQSGV F  +    SP++G+ KY ++L DG +
Sbjct  114  -GSSPSITFPLVQGMGFVTAIYNNLTPVIQSGVGFRSVTAGSSPKSGVTKYRVTLNDGQT  172

Query  206  WLLYATPDDGSDPQLQLASNSEIIGPAGWSGTIQVAKNPAGASG-EKFYDNSSGVYAVEG  264
            WLLYATP  GSD +L L  NS I+G   +SG IQ+AK P      E  YDN++GVY    
Sbjct  173  WLLYATPPSGSDLELTLVDNSTIVGSKPFSGIIQIAKLPGEDGESEAVYDNAAGVYPTGA  232

Query  265  AVMGSVS-ESTGTYSLMWAKAGKDAQNTPLLMFALPHHMESFDASTQSRATNITLRTTTK  323
             + GSVS  +TGTYS  + KAGK   + PLLMFALPHH+ESFD+ T +R T + L +TTK
Sbjct  233  TLSGSVSGGATGTYSFSYTKAGKSESSGPLLMFALPHHVESFDSDTAARVTGLKLDSTTK  292

Query  324  GQATAVIGEYWTMVEPELPISMGFAPWS  351
            G  TAV+G+ WTM EP LP+ +GF PWS
Sbjct  293  GVMTAVLGDSWTMEEPNLPVDIGFLPWS  320



Lambda      K        H        a         alpha
   0.316    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 852428620


Query= TCONS_00000657

Length=671
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 8...  539     0.0   
CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 8...  469     4e-163


>CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 81 C-terminal 
domain.  Family of eukaryotic beta-1,3-glucanases. Within 
the Aspergillus fumigatus protein, two perfectly conserved 
Glu residues (E550 or E554) have been proposed as putative 
nucleophiles of the active site of the Engl1 endoglucanase, 
while the proton donor would be D475. The endo-beta-1,3-glucanase 
activity is essential for efficient spore release. This 
entry represents the helical C-terminal domain.
Length=349

 Score = 539 bits (1392),  Expect = 0.0, Method: Composition-based stats.
 Identities = 182/272 (67%), Positives = 214/272 (79%), Gaps = 1/272 (0%)

Query  359  KISPAAQQVILAAAPTELQQDMDAQTNLNSMYFSGKALSKFATLLYTVDKLGGNSTLAAE  418
              S  A Q+I +AA  ELQQD+ AQ+NL+SMYFSGKAL+KFA +LY V+ + G+  LA  
Sbjct  1    GYSADALQLIASAANKELQQDISAQSNLDSMYFSGKALAKFARILYVVNDILGDEDLAPA  60

Query  419  GLARLKQSFARFIDNRQQFPLVYDNVWKGVVSSASYATGDVGADFGNTLYNDHHFHYGYF  478
            GL +LK++FARF++N QQFPLVYD  W GVVSSA Y TGD GADFGNT YNDHHFHYGYF
Sbjct  61   GLTKLKEAFARFVNNTQQFPLVYDTKWGGVVSSAGY-TGDSGADFGNTYYNDHHFHYGYF  119

Query  479  IHAAAIIGSMDPQWLETSKDWVNMLVRDAGNSAGNDPLFPFSRGFDWFHGHSWAKGLFES  538
            ++AAA+IG +DP WL  +K WVN LVRD  N + +DP FP SR FDWFHGHSWAKGLFES
Sbjct  120  VYAAAVIGKLDPSWLAQNKAWVNTLVRDVANPSSDDPYFPVSRSFDWFHGHSWAKGLFES  179

Query  539  FDGKDEESTSEDAMFAYALKMWGKTIGDVSMEARGNLMLGILRRSMRNYFLMESNNKNHP  598
             DGKD+ES+SED   AYALK+WG  IGD +MEARGNLML I+ RS+  YFL +S+N   P
Sbjct  180  GDGKDQESSSEDYNAAYALKLWGLVIGDANMEARGNLMLAIMARSLNTYFLYKSDNTIQP  239

Query  599  ANFIANKVTGILFENKVDHTTYFGNNLEYIQG  630
            A FI NKV+GILFENK+DHTTYFG N EYIQG
Sbjct  240  AEFIGNKVSGILFENKIDHTTYFGTNPEYIQG  271


>CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 81.  Family 
of eukaryotic beta-1,3-glucanases. Within the Aspergillus 
fumigatus protein ENGL1, two perfectly conserved Glu residues 
(E550 or E554) have been proposed as putative nucleophiles 
of the active site of the Engl1 endoglucanase, while the 
proton donor would be D475. The endo-beta-1,3-glucanase activity 
is essential for efficient spore release.
Length=321

 Score = 469 bits (1209),  Expect = 4e-163, Method: Composition-based stats.
 Identities = 174/328 (53%), Positives = 218/328 (66%), Gaps = 10/328 (3%)

Query  26   HPVPKNGIVNTDTPVETNKFYCGLFLGTQTNNTFTHPYSVAWVKGGGTSQSYGMAISHVE  85
            HPVP +G+ N+ +P++TNKFY  LFLG QT   +THPYS+ W KGG    S+G+AISH E
Sbjct  1    HPVPPSGVSNSGSPIQTNKFYANLFLGDQTQPVWTHPYSLWWSKGG----SWGLAISHTE  56

Query  86   SNIVAHGPVNTAIPGSPISYYVNPIGIHSVILSASELGPSTVLTTENPLPFSANAVLRPS  145
            ++    GP      G P  YY NPIGI S++LSA+EL  ST LT  +   FS    L PS
Sbjct  57   ASQRVFGPDP---DGGPAQYYFNPIGIQSLVLSAAELSSSTTLTVSSLTDFSVTVNLSPS  113

Query  146  ASSSQSITIPVVQGMGFVTGIYSNLQPKIQSGVFFTKMVTAGSPRTGIFKYSLSLKDGTS  205
              SS SIT P+VQGMGFVT IY+NL P IQSGV F  +    SP++G+ KY ++L DG +
Sbjct  114  -GSSPSITFPLVQGMGFVTAIYNNLTPVIQSGVGFRSVTAGSSPKSGVTKYRVTLNDGQT  172

Query  206  WLLYATPDDGSDPQLQLASNSEIIGPAGWSGTIQVAKNPAGASG-EKFYDNSSGVYAVEG  264
            WLLYATP  GSD +L L  NS I+G   +SG IQ+AK P      E  YDN++GVY    
Sbjct  173  WLLYATPPSGSDLELTLVDNSTIVGSKPFSGIIQIAKLPGEDGESEAVYDNAAGVYPTGA  232

Query  265  AVMGSVS-ESTGTYSLMWAKAGKDAQNTPLLMFALPHHMESFDASTQSRATNITLRTTTK  323
             + GSVS  +TGTYS  + KAGK   + PLLMFALPHH+ESFD+ T +R T + L +TTK
Sbjct  233  TLSGSVSGGATGTYSFSYTKAGKSESSGPLLMFALPHHVESFDSDTAARVTGLKLDSTTK  292

Query  324  GQATAVIGEYWTMVEPELPISMGFAPWS  351
            G  TAV+G+ WTM EP LP+ +GF PWS
Sbjct  293  GVMTAVLGDSWTMEEPNLPVDIGFLPWS  320



Lambda      K        H        a         alpha
   0.316    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 852428620


Query= TCONS_00000658

Length=671
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 8...  539     0.0   
CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 8...  469     4e-163


>CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 81 C-terminal 
domain.  Family of eukaryotic beta-1,3-glucanases. Within 
the Aspergillus fumigatus protein, two perfectly conserved 
Glu residues (E550 or E554) have been proposed as putative 
nucleophiles of the active site of the Engl1 endoglucanase, 
while the proton donor would be D475. The endo-beta-1,3-glucanase 
activity is essential for efficient spore release. This 
entry represents the helical C-terminal domain.
Length=349

 Score = 539 bits (1392),  Expect = 0.0, Method: Composition-based stats.
 Identities = 182/272 (67%), Positives = 214/272 (79%), Gaps = 1/272 (0%)

Query  359  KISPAAQQVILAAAPTELQQDMDAQTNLNSMYFSGKALSKFATLLYTVDKLGGNSTLAAE  418
              S  A Q+I +AA  ELQQD+ AQ+NL+SMYFSGKAL+KFA +LY V+ + G+  LA  
Sbjct  1    GYSADALQLIASAANKELQQDISAQSNLDSMYFSGKALAKFARILYVVNDILGDEDLAPA  60

Query  419  GLARLKQSFARFIDNRQQFPLVYDNVWKGVVSSASYATGDVGADFGNTLYNDHHFHYGYF  478
            GL +LK++FARF++N QQFPLVYD  W GVVSSA Y TGD GADFGNT YNDHHFHYGYF
Sbjct  61   GLTKLKEAFARFVNNTQQFPLVYDTKWGGVVSSAGY-TGDSGADFGNTYYNDHHFHYGYF  119

Query  479  IHAAAIIGSMDPQWLETSKDWVNMLVRDAGNSAGNDPLFPFSRGFDWFHGHSWAKGLFES  538
            ++AAA+IG +DP WL  +K WVN LVRD  N + +DP FP SR FDWFHGHSWAKGLFES
Sbjct  120  VYAAAVIGKLDPSWLAQNKAWVNTLVRDVANPSSDDPYFPVSRSFDWFHGHSWAKGLFES  179

Query  539  FDGKDEESTSEDAMFAYALKMWGKTIGDVSMEARGNLMLGILRRSMRNYFLMESNNKNHP  598
             DGKD+ES+SED   AYALK+WG  IGD +MEARGNLML I+ RS+  YFL +S+N   P
Sbjct  180  GDGKDQESSSEDYNAAYALKLWGLVIGDANMEARGNLMLAIMARSLNTYFLYKSDNTIQP  239

Query  599  ANFIANKVTGILFENKVDHTTYFGNNLEYIQG  630
            A FI NKV+GILFENK+DHTTYFG N EYIQG
Sbjct  240  AEFIGNKVSGILFENKIDHTTYFGTNPEYIQG  271


>CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 81.  Family 
of eukaryotic beta-1,3-glucanases. Within the Aspergillus 
fumigatus protein ENGL1, two perfectly conserved Glu residues 
(E550 or E554) have been proposed as putative nucleophiles 
of the active site of the Engl1 endoglucanase, while the 
proton donor would be D475. The endo-beta-1,3-glucanase activity 
is essential for efficient spore release.
Length=321

 Score = 469 bits (1209),  Expect = 4e-163, Method: Composition-based stats.
 Identities = 174/328 (53%), Positives = 218/328 (66%), Gaps = 10/328 (3%)

Query  26   HPVPKNGIVNTDTPVETNKFYCGLFLGTQTNNTFTHPYSVAWVKGGGTSQSYGMAISHVE  85
            HPVP +G+ N+ +P++TNKFY  LFLG QT   +THPYS+ W KGG    S+G+AISH E
Sbjct  1    HPVPPSGVSNSGSPIQTNKFYANLFLGDQTQPVWTHPYSLWWSKGG----SWGLAISHTE  56

Query  86   SNIVAHGPVNTAIPGSPISYYVNPIGIHSVILSASELGPSTVLTTENPLPFSANAVLRPS  145
            ++    GP      G P  YY NPIGI S++LSA+EL  ST LT  +   FS    L PS
Sbjct  57   ASQRVFGPDP---DGGPAQYYFNPIGIQSLVLSAAELSSSTTLTVSSLTDFSVTVNLSPS  113

Query  146  ASSSQSITIPVVQGMGFVTGIYSNLQPKIQSGVFFTKMVTAGSPRTGIFKYSLSLKDGTS  205
              SS SIT P+VQGMGFVT IY+NL P IQSGV F  +    SP++G+ KY ++L DG +
Sbjct  114  -GSSPSITFPLVQGMGFVTAIYNNLTPVIQSGVGFRSVTAGSSPKSGVTKYRVTLNDGQT  172

Query  206  WLLYATPDDGSDPQLQLASNSEIIGPAGWSGTIQVAKNPAGASG-EKFYDNSSGVYAVEG  264
            WLLYATP  GSD +L L  NS I+G   +SG IQ+AK P      E  YDN++GVY    
Sbjct  173  WLLYATPPSGSDLELTLVDNSTIVGSKPFSGIIQIAKLPGEDGESEAVYDNAAGVYPTGA  232

Query  265  AVMGSVS-ESTGTYSLMWAKAGKDAQNTPLLMFALPHHMESFDASTQSRATNITLRTTTK  323
             + GSVS  +TGTYS  + KAGK   + PLLMFALPHH+ESFD+ T +R T + L +TTK
Sbjct  233  TLSGSVSGGATGTYSFSYTKAGKSESSGPLLMFALPHHVESFDSDTAARVTGLKLDSTTK  292

Query  324  GQATAVIGEYWTMVEPELPISMGFAPWS  351
            G  TAV+G+ WTM EP LP+ +GF PWS
Sbjct  293  GVMTAVLGDSWTMEEPNLPVDIGFLPWS  320



Lambda      K        H        a         alpha
   0.316    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 852428620


Query= TCONS_00000660

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00000661

Length=723
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 8...  683     0.0   
CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 8...  470     1e-162


>CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 81 C-terminal 
domain.  Family of eukaryotic beta-1,3-glucanases. Within 
the Aspergillus fumigatus protein, two perfectly conserved 
Glu residues (E550 or E554) have been proposed as putative 
nucleophiles of the active site of the Engl1 endoglucanase, 
while the proton donor would be D475. The endo-beta-1,3-glucanase 
activity is essential for efficient spore release. This 
entry represents the helical C-terminal domain.
Length=349

 Score = 683 bits (1766),  Expect = 0.0, Method: Composition-based stats.
 Identities = 233/352 (66%), Positives = 277/352 (79%), Gaps = 5/352 (1%)

Query  359  KISPAAQQVILAAAPTELQQDMDAQTNLNSMYFSGKALSKFATLLYTVDKLGGNSTLAAE  418
              S  A Q+I +AA  ELQQD+ AQ+NL+SMYFSGKAL+KFA +LY V+ + G+  LA  
Sbjct  1    GYSADALQLIASAANKELQQDISAQSNLDSMYFSGKALAKFARILYVVNDILGDEDLAPA  60

Query  419  GLARLKQSFARFIDNRQQFPLVYDNVWKGVVSSASYATGDVGADFGNTLYNDHHFHYGYF  478
            GL +LK++FARF++N QQFPLVYD  W GVVSSA Y TGD GADFGNT YNDHHFHYGYF
Sbjct  61   GLTKLKEAFARFVNNTQQFPLVYDTKWGGVVSSAGY-TGDSGADFGNTYYNDHHFHYGYF  119

Query  479  IHAAAIIGSMDPQWLETSKDWVNMLVRDAGNSAGNDPLFPFSRGFDWFHGHSWAKGLFES  538
            ++AAA+IG +DP WL  +K WVN LVRD  N + +DP FP SR FDWFHGHSWAKGLFES
Sbjct  120  VYAAAVIGKLDPSWLAQNKAWVNTLVRDVANPSSDDPYFPVSRSFDWFHGHSWAKGLFES  179

Query  539  FDGKDEESTSEDAMFAYALKMWGKTIGDVSMEARGNLMLGILRRSMRNYFLMESNNKNHP  598
             DGKD+ES+SED   AYALK+WG  IGD +MEARGNLML I+ RS+  YFL +S+N   P
Sbjct  180  GDGKDQESSSEDYNAAYALKLWGLVIGDANMEARGNLMLAIMARSLNTYFLYKSDNTIQP  239

Query  599  ANFIANKVTGILFENKVDHTTYFGNNLEYIQGIHMLPILPCSAFTRSKQFVKEEWDAMFA  658
            A FI NKV+GILFENK+DHTTYFG N EYIQGIHMLPI P S++ RS  FVKEEWDA F+
Sbjct  240  AEFIGNKVSGILFENKIDHTTYFGTNPEYIQGIHMLPITPISSYIRSPSFVKEEWDAKFS  299

Query  659  SNGPDPAENVVGGWKGVLYANLALVDPAASWNFFTQPNFDYSWIDGGASRTW  710
            +      +NV GGWKG+LYANLAL+DP A++ FF+ PNFD +W+DGGASRTW
Sbjct  300  NG----VDNVEGGWKGILYANLALIDPKAAYEFFSSPNFDLTWLDGGASRTW  347


>CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 81.  Family 
of eukaryotic beta-1,3-glucanases. Within the Aspergillus 
fumigatus protein ENGL1, two perfectly conserved Glu residues 
(E550 or E554) have been proposed as putative nucleophiles 
of the active site of the Engl1 endoglucanase, while the 
proton donor would be D475. The endo-beta-1,3-glucanase activity 
is essential for efficient spore release.
Length=321

 Score = 470 bits (1211),  Expect = 1e-162, Method: Composition-based stats.
 Identities = 174/328 (53%), Positives = 218/328 (66%), Gaps = 10/328 (3%)

Query  26   HPVPKNGIVNTDTPVETNKFYCGLFLGTQTNNTFTHPYSVAWVKGGGTSQSYGMAISHVE  85
            HPVP +G+ N+ +P++TNKFY  LFLG QT   +THPYS+ W KGG    S+G+AISH E
Sbjct  1    HPVPPSGVSNSGSPIQTNKFYANLFLGDQTQPVWTHPYSLWWSKGG----SWGLAISHTE  56

Query  86   SNIVAHGPVNTAIPGSPISYYVNPIGIHSVILSASELGPSTVLTTENPLPFSANAVLRPS  145
            ++    GP      G P  YY NPIGI S++LSA+EL  ST LT  +   FS    L PS
Sbjct  57   ASQRVFGPDP---DGGPAQYYFNPIGIQSLVLSAAELSSSTTLTVSSLTDFSVTVNLSPS  113

Query  146  ASSSQSITIPVVQGMGFVTGIYSNLQPKIQSGVFFTKMVTAGSPRTGIFKYSLSLKDGTS  205
              SS SIT P+VQGMGFVT IY+NL P IQSGV F  +    SP++G+ KY ++L DG +
Sbjct  114  -GSSPSITFPLVQGMGFVTAIYNNLTPVIQSGVGFRSVTAGSSPKSGVTKYRVTLNDGQT  172

Query  206  WLLYATPDDGSDPQLQLASNSEIIGPAGWSGTIQVAKNPAGASG-EKFYDNSSGVYAVEG  264
            WLLYATP  GSD +L L  NS I+G   +SG IQ+AK P      E  YDN++GVY    
Sbjct  173  WLLYATPPSGSDLELTLVDNSTIVGSKPFSGIIQIAKLPGEDGESEAVYDNAAGVYPTGA  232

Query  265  AVMGSVS-ESTGTYSLMWAKAGKDAQNTPLLMFALPHHMESFDASTQSRATNITLRTTTK  323
             + GSVS  +TGTYS  + KAGK   + PLLMFALPHH+ESFD+ T +R T + L +TTK
Sbjct  233  TLSGSVSGGATGTYSFSYTKAGKSESSGPLLMFALPHHVESFDSDTAARVTGLKLDSTTK  292

Query  324  GQATAVIGEYWTMVEPELPISMGFAPWS  351
            G  TAV+G+ WTM EP LP+ +GF PWS
Sbjct  293  GVMTAVLGDSWTMEEPNLPVDIGFLPWS  320



Lambda      K        H        a         alpha
   0.316    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 915290608


Query= TCONS_00006740

Length=722
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 8...  687     0.0   
CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 8...  470     4e-163


>CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 81 C-terminal 
domain.  Family of eukaryotic beta-1,3-glucanases. Within 
the Aspergillus fumigatus protein, two perfectly conserved 
Glu residues (E550 or E554) have been proposed as putative 
nucleophiles of the active site of the Engl1 endoglucanase, 
while the proton donor would be D475. The endo-beta-1,3-glucanase 
activity is essential for efficient spore release. This 
entry represents the helical C-terminal domain.
Length=349

 Score = 687 bits (1775),  Expect = 0.0, Method: Composition-based stats.
 Identities = 235/354 (66%), Positives = 279/354 (79%), Gaps = 5/354 (1%)

Query  359  KISPAAQQVILAAAPTELQQDMDAQTNLNSMYFSGKALSKFATLLYTVDKLGGNSTLAAE  418
              S  A Q+I +AA  ELQQD+ AQ+NL+SMYFSGKAL+KFA +LY V+ + G+  LA  
Sbjct  1    GYSADALQLIASAANKELQQDISAQSNLDSMYFSGKALAKFARILYVVNDILGDEDLAPA  60

Query  419  GLARLKQSFARFIDNRQQFPLVYDNVWKGVVSSASYATGDVGADFGNTLYNDHHFHYGYF  478
            GL +LK++FARF++N QQFPLVYD  W GVVSSA Y TGD GADFGNT YNDHHFHYGYF
Sbjct  61   GLTKLKEAFARFVNNTQQFPLVYDTKWGGVVSSAGY-TGDSGADFGNTYYNDHHFHYGYF  119

Query  479  IHAAAIIGSMDPQWLETSKDWVNMLVRDAGNSAGNDPLFPFSRGFDWFHGHSWAKGLFES  538
            ++AAA+IG +DP WL  +K WVN LVRD  N + +DP FP SR FDWFHGHSWAKGLFES
Sbjct  120  VYAAAVIGKLDPSWLAQNKAWVNTLVRDVANPSSDDPYFPVSRSFDWFHGHSWAKGLFES  179

Query  539  FDGKDEESTSEDAMFAYALKMWGKTIGDVSMEARGNLMLGILRRSMRNYFLMESNNKNHP  598
             DGKD+ES+SED   AYALK+WG  IGD +MEARGNLML I+ RS+  YFL +S+N   P
Sbjct  180  GDGKDQESSSEDYNAAYALKLWGLVIGDANMEARGNLMLAIMARSLNTYFLYKSDNTIQP  239

Query  599  ANFIANKVTGILFENKVDHTTYFGNNLEYIQGIHMLPILPCSAFTRSKQFVKEEWDAMFA  658
            A FI NKV+GILFENK+DHTTYFG N EYIQGIHMLPI P S++ RS  FVKEEWDA F+
Sbjct  240  AEFIGNKVSGILFENKIDHTTYFGTNPEYIQGIHMLPITPISSYIRSPSFVKEEWDAKFS  299

Query  659  SNGPDPAENVVGGWKGVLYANLALVDPAASWNFFTQPNFDYSWIDGGASRTWYL  712
            +      +NV GGWKG+LYANLAL+DP A++ FF+ PNFD +W+DGGASRTWYL
Sbjct  300  NG----VDNVEGGWKGILYANLALIDPKAAYEFFSSPNFDLTWLDGGASRTWYL  349


>CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 81.  Family 
of eukaryotic beta-1,3-glucanases. Within the Aspergillus 
fumigatus protein ENGL1, two perfectly conserved Glu residues 
(E550 or E554) have been proposed as putative nucleophiles 
of the active site of the Engl1 endoglucanase, while the 
proton donor would be D475. The endo-beta-1,3-glucanase activity 
is essential for efficient spore release.
Length=321

 Score = 470 bits (1213),  Expect = 4e-163, Method: Composition-based stats.
 Identities = 174/328 (53%), Positives = 218/328 (66%), Gaps = 10/328 (3%)

Query  26   HPVPKNGIVNTDTPVETNKFYCGLFLGTQTNNTFTHPYSVAWVKGGGTSQSYGMAISHVE  85
            HPVP +G+ N+ +P++TNKFY  LFLG QT   +THPYS+ W KGG    S+G+AISH E
Sbjct  1    HPVPPSGVSNSGSPIQTNKFYANLFLGDQTQPVWTHPYSLWWSKGG----SWGLAISHTE  56

Query  86   SNIVAHGPVNTAIPGSPISYYVNPIGIHSVILSASELGPSTVLTTENPLPFSANAVLRPS  145
            ++    GP      G P  YY NPIGI S++LSA+EL  ST LT  +   FS    L PS
Sbjct  57   ASQRVFGPDP---DGGPAQYYFNPIGIQSLVLSAAELSSSTTLTVSSLTDFSVTVNLSPS  113

Query  146  ASSSQSITIPVVQGMGFVTGIYSNLQPKIQSGVFFTKMVTAGSPRTGIFKYSLSLKDGTS  205
              SS SIT P+VQGMGFVT IY+NL P IQSGV F  +    SP++G+ KY ++L DG +
Sbjct  114  -GSSPSITFPLVQGMGFVTAIYNNLTPVIQSGVGFRSVTAGSSPKSGVTKYRVTLNDGQT  172

Query  206  WLLYATPDDGSDPQLQLASNSEIIGPAGWSGTIQVAKNPAGASG-EKFYDNSSGVYAVEG  264
            WLLYATP  GSD +L L  NS I+G   +SG IQ+AK P      E  YDN++GVY    
Sbjct  173  WLLYATPPSGSDLELTLVDNSTIVGSKPFSGIIQIAKLPGEDGESEAVYDNAAGVYPTGA  232

Query  265  AVMGSVS-ESTGTYSLMWAKAGKDAQNTPLLMFALPHHMESFDASTQSRATNITLRTTTK  323
             + GSVS  +TGTYS  + KAGK   + PLLMFALPHH+ESFD+ T +R T + L +TTK
Sbjct  233  TLSGSVSGGATGTYSFSYTKAGKSESSGPLLMFALPHHVESFDSDTAARVTGLKLDSTTK  292

Query  324  GQATAVIGEYWTMVEPELPISMGFAPWS  351
            G  TAV+G+ WTM EP LP+ +GF PWS
Sbjct  293  GVMTAVLGDSWTMEEPNLPVDIGFLPWS  320



Lambda      K        H        a         alpha
   0.316    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0778    0.140     1.90     42.6     43.6 

Effective search space used: 913835456


Query= TCONS_00000662

Length=671
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 8...  539     0.0   
CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 8...  469     4e-163


>CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 81 C-terminal 
domain.  Family of eukaryotic beta-1,3-glucanases. Within 
the Aspergillus fumigatus protein, two perfectly conserved 
Glu residues (E550 or E554) have been proposed as putative 
nucleophiles of the active site of the Engl1 endoglucanase, 
while the proton donor would be D475. The endo-beta-1,3-glucanase 
activity is essential for efficient spore release. This 
entry represents the helical C-terminal domain.
Length=349

 Score = 539 bits (1392),  Expect = 0.0, Method: Composition-based stats.
 Identities = 182/272 (67%), Positives = 214/272 (79%), Gaps = 1/272 (0%)

Query  359  KISPAAQQVILAAAPTELQQDMDAQTNLNSMYFSGKALSKFATLLYTVDKLGGNSTLAAE  418
              S  A Q+I +AA  ELQQD+ AQ+NL+SMYFSGKAL+KFA +LY V+ + G+  LA  
Sbjct  1    GYSADALQLIASAANKELQQDISAQSNLDSMYFSGKALAKFARILYVVNDILGDEDLAPA  60

Query  419  GLARLKQSFARFIDNRQQFPLVYDNVWKGVVSSASYATGDVGADFGNTLYNDHHFHYGYF  478
            GL +LK++FARF++N QQFPLVYD  W GVVSSA Y TGD GADFGNT YNDHHFHYGYF
Sbjct  61   GLTKLKEAFARFVNNTQQFPLVYDTKWGGVVSSAGY-TGDSGADFGNTYYNDHHFHYGYF  119

Query  479  IHAAAIIGSMDPQWLETSKDWVNMLVRDAGNSAGNDPLFPFSRGFDWFHGHSWAKGLFES  538
            ++AAA+IG +DP WL  +K WVN LVRD  N + +DP FP SR FDWFHGHSWAKGLFES
Sbjct  120  VYAAAVIGKLDPSWLAQNKAWVNTLVRDVANPSSDDPYFPVSRSFDWFHGHSWAKGLFES  179

Query  539  FDGKDEESTSEDAMFAYALKMWGKTIGDVSMEARGNLMLGILRRSMRNYFLMESNNKNHP  598
             DGKD+ES+SED   AYALK+WG  IGD +MEARGNLML I+ RS+  YFL +S+N   P
Sbjct  180  GDGKDQESSSEDYNAAYALKLWGLVIGDANMEARGNLMLAIMARSLNTYFLYKSDNTIQP  239

Query  599  ANFIANKVTGILFENKVDHTTYFGNNLEYIQG  630
            A FI NKV+GILFENK+DHTTYFG N EYIQG
Sbjct  240  AEFIGNKVSGILFENKIDHTTYFGTNPEYIQG  271


>CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 81.  Family 
of eukaryotic beta-1,3-glucanases. Within the Aspergillus 
fumigatus protein ENGL1, two perfectly conserved Glu residues 
(E550 or E554) have been proposed as putative nucleophiles 
of the active site of the Engl1 endoglucanase, while the 
proton donor would be D475. The endo-beta-1,3-glucanase activity 
is essential for efficient spore release.
Length=321

 Score = 469 bits (1209),  Expect = 4e-163, Method: Composition-based stats.
 Identities = 174/328 (53%), Positives = 218/328 (66%), Gaps = 10/328 (3%)

Query  26   HPVPKNGIVNTDTPVETNKFYCGLFLGTQTNNTFTHPYSVAWVKGGGTSQSYGMAISHVE  85
            HPVP +G+ N+ +P++TNKFY  LFLG QT   +THPYS+ W KGG    S+G+AISH E
Sbjct  1    HPVPPSGVSNSGSPIQTNKFYANLFLGDQTQPVWTHPYSLWWSKGG----SWGLAISHTE  56

Query  86   SNIVAHGPVNTAIPGSPISYYVNPIGIHSVILSASELGPSTVLTTENPLPFSANAVLRPS  145
            ++    GP      G P  YY NPIGI S++LSA+EL  ST LT  +   FS    L PS
Sbjct  57   ASQRVFGPDP---DGGPAQYYFNPIGIQSLVLSAAELSSSTTLTVSSLTDFSVTVNLSPS  113

Query  146  ASSSQSITIPVVQGMGFVTGIYSNLQPKIQSGVFFTKMVTAGSPRTGIFKYSLSLKDGTS  205
              SS SIT P+VQGMGFVT IY+NL P IQSGV F  +    SP++G+ KY ++L DG +
Sbjct  114  -GSSPSITFPLVQGMGFVTAIYNNLTPVIQSGVGFRSVTAGSSPKSGVTKYRVTLNDGQT  172

Query  206  WLLYATPDDGSDPQLQLASNSEIIGPAGWSGTIQVAKNPAGASG-EKFYDNSSGVYAVEG  264
            WLLYATP  GSD +L L  NS I+G   +SG IQ+AK P      E  YDN++GVY    
Sbjct  173  WLLYATPPSGSDLELTLVDNSTIVGSKPFSGIIQIAKLPGEDGESEAVYDNAAGVYPTGA  232

Query  265  AVMGSVS-ESTGTYSLMWAKAGKDAQNTPLLMFALPHHMESFDASTQSRATNITLRTTTK  323
             + GSVS  +TGTYS  + KAGK   + PLLMFALPHH+ESFD+ T +R T + L +TTK
Sbjct  233  TLSGSVSGGATGTYSFSYTKAGKSESSGPLLMFALPHHVESFDSDTAARVTGLKLDSTTK  292

Query  324  GQATAVIGEYWTMVEPELPISMGFAPWS  351
            G  TAV+G+ WTM EP LP+ +GF PWS
Sbjct  293  GVMTAVLGDSWTMEEPNLPVDIGFLPWS  320



Lambda      K        H        a         alpha
   0.316    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 852428620


Query= TCONS_00000663

Length=974
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 8...  691     0.0   
CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 8...  469     2e-159


>CDD:435946 pfam17652, Glyco_hydro81C, Glycosyl hydrolase family 81 C-terminal 
domain.  Family of eukaryotic beta-1,3-glucanases. Within 
the Aspergillus fumigatus protein, two perfectly conserved 
Glu residues (E550 or E554) have been proposed as putative 
nucleophiles of the active site of the Engl1 endoglucanase, 
while the proton donor would be D475. The endo-beta-1,3-glucanase 
activity is essential for efficient spore release. This 
entry represents the helical C-terminal domain.
Length=349

 Score = 691 bits (1785),  Expect = 0.0, Method: Composition-based stats.
 Identities = 235/362 (65%), Positives = 279/362 (77%), Gaps = 13/362 (4%)

Query  603  KISPAAQQVILAAAPTELQQDMDAQTNLNSMYFSGKALSKFATLLYTVDKLGGNSTLAAE  662
              S  A Q+I +AA  ELQQD+ AQ+NL+SMYFSGKAL+KFA +LY V+ + G+  LA  
Sbjct  1    GYSADALQLIASAANKELQQDISAQSNLDSMYFSGKALAKFARILYVVNDILGDEDLAPA  60

Query  663  GLARLKQSFARFIDNRQQFPLVYDNVWKGVVSSASYATGDVGADFGNTLYNDHHFHYGYF  722
            GL +LK++FARF++N QQFPLVYD  W GVVSSA Y TGD GADFGNT YNDHHFHYGYF
Sbjct  61   GLTKLKEAFARFVNNTQQFPLVYDTKWGGVVSSAGY-TGDSGADFGNTYYNDHHFHYGYF  119

Query  723  IHAAAIIGSMDPQWLETSKDWVNMLVRDAGNSAGNDPLFPFSRGFDWFHGHSWAKGLFES  782
            ++AAA+IG +DP WL  +K WVN LVRD  N + +DP FP SR FDWFHGHSWAKGLFES
Sbjct  120  VYAAAVIGKLDPSWLAQNKAWVNTLVRDVANPSSDDPYFPVSRSFDWFHGHSWAKGLFES  179

Query  783  FDGKDEESTSEDAMFAYALKMWGKTIGDVSMEARGNLMLGILRRSMRNYFLMESNNKNHP  842
             DGKD+ES+SED   AYALK+WG  IGD +MEARGNLML I+ RS+  YFL +S+N   P
Sbjct  180  GDGKDQESSSEDYNAAYALKLWGLVIGDANMEARGNLMLAIMARSLNTYFLYKSDNTIQP  239

Query  843  ANFIANKVTGILFENKVDHTTYFGNNLEYIQGYGLLSPSLIHMLPILPCSAFTRSKQFVK  902
            A FI NKV+GILFENK+DHTTYFG N EYIQG        IHMLPI P S++ RS  FVK
Sbjct  240  AEFIGNKVSGILFENKIDHTTYFGTNPEYIQG--------IHMLPITPISSYIRSPSFVK  291

Query  903  EEWDAMFASNGPDPAENVVGGWKGVLYANLALVDPAASWNFFTQPNFDYSWIDGGASRTW  962
            EEWDA F++      +NV GGWKG+LYANLAL+DP A++ FF+ PNFD +W+DGGASRTW
Sbjct  292  EEWDAKFSNG----VDNVEGGWKGILYANLALIDPKAAYEFFSSPNFDLTWLDGGASRTW  347

Query  963  YL  964
            YL
Sbjct  348  YL  349


>CDD:427418 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 81.  Family 
of eukaryotic beta-1,3-glucanases. Within the Aspergillus 
fumigatus protein ENGL1, two perfectly conserved Glu residues 
(E550 or E554) have been proposed as putative nucleophiles 
of the active site of the Engl1 endoglucanase, while the 
proton donor would be D475. The endo-beta-1,3-glucanase activity 
is essential for efficient spore release.
Length=321

 Score = 469 bits (1209),  Expect = 2e-159, Method: Composition-based stats.
 Identities = 174/328 (53%), Positives = 218/328 (66%), Gaps = 10/328 (3%)

Query  270  HPVPKNGIVNTDTPVETNKFYCGLFLGTQTNNTFTHPYSVAWVKGGGTSQSYGMAISHVE  329
            HPVP +G+ N+ +P++TNKFY  LFLG QT   +THPYS+ W KGG    S+G+AISH E
Sbjct  1    HPVPPSGVSNSGSPIQTNKFYANLFLGDQTQPVWTHPYSLWWSKGG----SWGLAISHTE  56

Query  330  SNIVAHGPVNTAIPGSPISYYVNPIGIHSVILSASELGPSTVLTTENPLPFSANAVLRPS  389
            ++    GP      G P  YY NPIGI S++LSA+EL  ST LT  +   FS    L PS
Sbjct  57   ASQRVFGPDP---DGGPAQYYFNPIGIQSLVLSAAELSSSTTLTVSSLTDFSVTVNLSPS  113

Query  390  ASSSQSITIPVVQGMGFVTGIYSNLQPKIQSGVFFTKMVTAGSPRTGIFKYSLSLKDGTS  449
              SS SIT P+VQGMGFVT IY+NL P IQSGV F  +    SP++G+ KY ++L DG +
Sbjct  114  -GSSPSITFPLVQGMGFVTAIYNNLTPVIQSGVGFRSVTAGSSPKSGVTKYRVTLNDGQT  172

Query  450  WLLYATPDDGSDPQLQLASNSEIIGPAGWSGTIQVAKNPAGASG-EKFYDNSSGVYAVEG  508
            WLLYATP  GSD +L L  NS I+G   +SG IQ+AK P      E  YDN++GVY    
Sbjct  173  WLLYATPPSGSDLELTLVDNSTIVGSKPFSGIIQIAKLPGEDGESEAVYDNAAGVYPTGA  232

Query  509  AVMGSVS-ESTGTYSLMWAKAGKDAQNTPLLMFALPHHMESFDASTQSRATNITLRTTTK  567
             + GSVS  +TGTYS  + KAGK   + PLLMFALPHH+ESFD+ T +R T + L +TTK
Sbjct  233  TLSGSVSGGATGTYSFSYTKAGKSESSGPLLMFALPHHVESFDSDTAARVTGLKLDSTTK  292

Query  568  GQATAVIGEYWTMVEPELPISMGFAPWS  595
            G  TAV+G+ WTM EP LP+ +GF PWS
Sbjct  293  GVMTAVLGDSWTMEEPNLPVDIGFLPWS  320



Lambda      K        H        a         alpha
   0.314    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1243139128


Query= TCONS_00006741

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein....  86.5    9e-21


>CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein.  This 
is a family of sodium/calcium exchanger integral membrane proteins. 
This family covers the integral membrane regions of 
the proteins. Sodium/calcium exchangers regulate intracellular 
Ca2+ concentrations in many cells; cardiac myocytes, epithelial 
cells, neurons retinal rod photoreceptors and smooth 
muscle cells. Ca2+ is moved into or out of the cytosol depending 
on Na+ concentration. In humans and rats there are 3 isoforms; 
NCX1 NCX2 and NCX3.
Length=149

 Score = 86.5 bits (215),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 32/148 (22%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query  305  ATIALVVVTILVAICADYLVGSIDSIVEKTSMSRTFIGLILIPIVGNAAEHVTAVVVAWK  364
            + +  ++  +L+++ AD LV S + +     +S T +GL ++ +  +  E V++++ A +
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  365  GKMDLAIGVAVGSSLQIALFVTPFLVIMGWILNVEMTLNFHI---FETVAFFISSLVVTF  421
            G+ DLA+G  +GS++   L V     ++G +    + L   +          +  L++  
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLL  121

Query  422  LIQDGKSNYLEGGLCLGMYLILALAFYV  449
            L   G+ +  EG + L +Y++  +   V
Sbjct  122  LPLFGRLSRFEGLVLLLLYIVYLVFQIV  149


 Score = 59.5 bits (145),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 73/164 (45%), Gaps = 19/164 (12%)

Query  105  STVVFSLNFLAIIPLASLLSFATEELAATMG---QALGGLMNATFGNAVELIVSIIALKD  161
            S ++F L  L I   A LL  + E LA  +G     LG  + A   +  EL+ SIIA   
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  162  NQIRVVQASMLGSILSNILLVLGCCFFIGGLRFSEQTFNSTVASTMSSMMTVASASLIIP  221
             +  +   +++GS + NILLVLG    IG ++         +   +         +L++ 
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLL-------LVALLLL  114

Query  222  ATLYASLSPSHSKTTTDNNILILSHGTAIILLVLYVMYLYFQLK  265
              L   L P   +         LS    ++LL+LY++YL FQ+ 
Sbjct  115  LLLLLLLLPLFGR---------LSRFEGLVLLLLYIVYLVFQIV  149



Lambda      K        H        a         alpha
   0.323    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 570537888


Query= TCONS_00000674

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein....  83.8    8e-20


>CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein.  This 
is a family of sodium/calcium exchanger integral membrane proteins. 
This family covers the integral membrane regions of 
the proteins. Sodium/calcium exchangers regulate intracellular 
Ca2+ concentrations in many cells; cardiac myocytes, epithelial 
cells, neurons retinal rod photoreceptors and smooth 
muscle cells. Ca2+ is moved into or out of the cytosol depending 
on Na+ concentration. In humans and rats there are 3 isoforms; 
NCX1 NCX2 and NCX3.
Length=149

 Score = 83.8 bits (208),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 32/148 (22%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query  283  ATIALVVVTILVAICADYLVGSIDSIVEKTSMSRTFIGLILIPIVGNAAEHVTAVVVAWK  342
            + +  ++  +L+++ AD LV S + +     +S T +GL ++ +  +  E V++++ A +
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  343  GKMDLAIGVAVGSSLQIALFVTPFLVIMGWILNVEMTLNFHI---FETVAFFISSLVVTF  399
            G+ DLA+G  +GS++   L V     ++G +    + L   +          +  L++  
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLL  121

Query  400  LIQDGKSNYLEGGLCLGMYLILALAFYV  427
            L   G+ +  EG + L +Y++  +   V
Sbjct  122  LPLFGRLSRFEGLVLLLLYIVYLVFQIV  149



Lambda      K        H        a         alpha
   0.323    0.137    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00006743

Length=313


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00006742

Length=313


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00006744

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein....  86.5    9e-21


>CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein.  This 
is a family of sodium/calcium exchanger integral membrane proteins. 
This family covers the integral membrane regions of 
the proteins. Sodium/calcium exchangers regulate intracellular 
Ca2+ concentrations in many cells; cardiac myocytes, epithelial 
cells, neurons retinal rod photoreceptors and smooth 
muscle cells. Ca2+ is moved into or out of the cytosol depending 
on Na+ concentration. In humans and rats there are 3 isoforms; 
NCX1 NCX2 and NCX3.
Length=149

 Score = 86.5 bits (215),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 32/148 (22%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query  305  ATIALVVVTILVAICADYLVGSIDSIVEKTSMSRTFIGLILIPIVGNAAEHVTAVVVAWK  364
            + +  ++  +L+++ AD LV S + +     +S T +GL ++ +  +  E V++++ A +
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  365  GKMDLAIGVAVGSSLQIALFVTPFLVIMGWILNVEMTLNFHI---FETVAFFISSLVVTF  421
            G+ DLA+G  +GS++   L V     ++G +    + L   +          +  L++  
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLL  121

Query  422  LIQDGKSNYLEGGLCLGMYLILALAFYV  449
            L   G+ +  EG + L +Y++  +   V
Sbjct  122  LPLFGRLSRFEGLVLLLLYIVYLVFQIV  149


 Score = 59.5 bits (145),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 73/164 (45%), Gaps = 19/164 (12%)

Query  105  STVVFSLNFLAIIPLASLLSFATEELAATMG---QALGGLMNATFGNAVELIVSIIALKD  161
            S ++F L  L I   A LL  + E LA  +G     LG  + A   +  EL+ SIIA   
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  162  NQIRVVQASMLGSILSNILLVLGCCFFIGGLRFSEQTFNSTVASTMSSMMTVASASLIIP  221
             +  +   +++GS + NILLVLG    IG ++         +   +         +L++ 
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLL-------LVALLLL  114

Query  222  ATLYASLSPSHSKTTTDNNILILSHGTAIILLVLYVMYLYFQLK  265
              L   L P   +         LS    ++LL+LY++YL FQ+ 
Sbjct  115  LLLLLLLLPLFGR---------LSRFEGLVLLLLYIVYLVFQIV  149



Lambda      K        H        a         alpha
   0.323    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 570537888


Query= TCONS_00000665

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein....  83.8    8e-20


>CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein.  This 
is a family of sodium/calcium exchanger integral membrane proteins. 
This family covers the integral membrane regions of 
the proteins. Sodium/calcium exchangers regulate intracellular 
Ca2+ concentrations in many cells; cardiac myocytes, epithelial 
cells, neurons retinal rod photoreceptors and smooth 
muscle cells. Ca2+ is moved into or out of the cytosol depending 
on Na+ concentration. In humans and rats there are 3 isoforms; 
NCX1 NCX2 and NCX3.
Length=149

 Score = 83.8 bits (208),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 32/148 (22%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query  283  ATIALVVVTILVAICADYLVGSIDSIVEKTSMSRTFIGLILIPIVGNAAEHVTAVVVAWK  342
            + +  ++  +L+++ AD LV S + +     +S T +GL ++ +  +  E V++++ A +
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  343  GKMDLAIGVAVGSSLQIALFVTPFLVIMGWILNVEMTLNFHI---FETVAFFISSLVVTF  399
            G+ DLA+G  +GS++   L V     ++G +    + L   +          +  L++  
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLL  121

Query  400  LIQDGKSNYLEGGLCLGMYLILALAFYV  427
            L   G+ +  EG + L +Y++  +   V
Sbjct  122  LPLFGRLSRFEGLVLLLLYIVYLVFQIV  149



Lambda      K        H        a         alpha
   0.323    0.137    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00000670

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein....  76.9    6e-18


>CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein.  This 
is a family of sodium/calcium exchanger integral membrane proteins. 
This family covers the integral membrane regions of 
the proteins. Sodium/calcium exchangers regulate intracellular 
Ca2+ concentrations in many cells; cardiac myocytes, epithelial 
cells, neurons retinal rod photoreceptors and smooth 
muscle cells. Ca2+ is moved into or out of the cytosol depending 
on Na+ concentration. In humans and rats there are 3 isoforms; 
NCX1 NCX2 and NCX3.
Length=149

 Score = 76.9 bits (190),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 32/148 (22%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query  135  ATIALVVVTILVAICADYLVGSIDSIVEKTSMSRTFIGLILIPIVGNAAEHVTAVVVAWK  194
            + +  ++  +L+++ AD LV S + +     +S T +GL ++ +  +  E V++++ A +
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  195  GKMDLAIGVAVGSSLQIALFVTPFLVIMGWILNVEMTLNFHI---FETVAFFISSLVVTF  251
            G+ DLA+G  +GS++   L V     ++G +    + L   +          +  L++  
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLL  121

Query  252  LIQDGKSNYLEGGLCLGMYLILALAFYV  279
            L   G+ +  EG + L +Y++  +   V
Sbjct  122  LPLFGRLSRFEGLVLLLLYIVYLVFQIV  149



Lambda      K        H        a         alpha
   0.324    0.138    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00000668

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein....  76.9    6e-18


>CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein.  This 
is a family of sodium/calcium exchanger integral membrane proteins. 
This family covers the integral membrane regions of 
the proteins. Sodium/calcium exchangers regulate intracellular 
Ca2+ concentrations in many cells; cardiac myocytes, epithelial 
cells, neurons retinal rod photoreceptors and smooth 
muscle cells. Ca2+ is moved into or out of the cytosol depending 
on Na+ concentration. In humans and rats there are 3 isoforms; 
NCX1 NCX2 and NCX3.
Length=149

 Score = 76.9 bits (190),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 32/148 (22%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query  135  ATIALVVVTILVAICADYLVGSIDSIVEKTSMSRTFIGLILIPIVGNAAEHVTAVVVAWK  194
            + +  ++  +L+++ AD LV S + +     +S T +GL ++ +  +  E V++++ A +
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  195  GKMDLAIGVAVGSSLQIALFVTPFLVIMGWILNVEMTLNFHI---FETVAFFISSLVVTF  251
            G+ DLA+G  +GS++   L V     ++G +    + L   +          +  L++  
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLL  121

Query  252  LIQDGKSNYLEGGLCLGMYLILALAFYV  279
            L   G+ +  EG + L +Y++  +   V
Sbjct  122  LPLFGRLSRFEGLVLLLLYIVYLVFQIV  149



Lambda      K        H        a         alpha
   0.324    0.138    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00000667

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein....  76.9    6e-18


>CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein.  This 
is a family of sodium/calcium exchanger integral membrane proteins. 
This family covers the integral membrane regions of 
the proteins. Sodium/calcium exchangers regulate intracellular 
Ca2+ concentrations in many cells; cardiac myocytes, epithelial 
cells, neurons retinal rod photoreceptors and smooth 
muscle cells. Ca2+ is moved into or out of the cytosol depending 
on Na+ concentration. In humans and rats there are 3 isoforms; 
NCX1 NCX2 and NCX3.
Length=149

 Score = 76.9 bits (190),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 32/148 (22%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query  135  ATIALVVVTILVAICADYLVGSIDSIVEKTSMSRTFIGLILIPIVGNAAEHVTAVVVAWK  194
            + +  ++  +L+++ AD LV S + +     +S T +GL ++ +  +  E V++++ A +
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  195  GKMDLAIGVAVGSSLQIALFVTPFLVIMGWILNVEMTLNFHI---FETVAFFISSLVVTF  251
            G+ DLA+G  +GS++   L V     ++G +    + L   +          +  L++  
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLL  121

Query  252  LIQDGKSNYLEGGLCLGMYLILALAFYV  279
            L   G+ +  EG + L +Y++  +   V
Sbjct  122  LPLFGRLSRFEGLVLLLLYIVYLVFQIV  149



Lambda      K        H        a         alpha
   0.324    0.138    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00006745

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein....  86.9    8e-21


>CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein.  This 
is a family of sodium/calcium exchanger integral membrane proteins. 
This family covers the integral membrane regions of 
the proteins. Sodium/calcium exchangers regulate intracellular 
Ca2+ concentrations in many cells; cardiac myocytes, epithelial 
cells, neurons retinal rod photoreceptors and smooth 
muscle cells. Ca2+ is moved into or out of the cytosol depending 
on Na+ concentration. In humans and rats there are 3 isoforms; 
NCX1 NCX2 and NCX3.
Length=149

 Score = 86.9 bits (216),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 32/148 (22%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query  303  ATIALVVVTILVAICADYLVGSIDSIVEKTSMSRTFIGLILIPIVGNAAEHVTAVVVAWK  362
            + +  ++  +L+++ AD LV S + +     +S T +GL ++ +  +  E V++++ A +
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  363  GKMDLAIGVAVGSSLQIALFVTPFLVIMGWILNVEMTLNFHI---FETVAFFISSLVVTF  419
            G+ DLA+G  +GS++   L V     ++G +    + L   +          +  L++  
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLL  121

Query  420  LIQDGKSNYLEGGLCLGMYLILALAFYV  447
            L   G+ +  EG + L +Y++  +   V
Sbjct  122  LPLFGRLSRFEGLVLLLLYIVYLVFQIV  149


 Score = 59.5 bits (145),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 73/164 (45%), Gaps = 19/164 (12%)

Query  103  STVVFSLNFLAIIPLASLLSFATEELAATMG---QALGGLMNATFGNAVELIVSIIALKD  159
            S ++F L  L I   A LL  + E LA  +G     LG  + A   +  EL+ SIIA   
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  160  NQIRVVQASMLGSILSNILLVLGCCFFIGGLRFSEQTFNSTVASTMSSMMTVASASLIIP  219
             +  +   +++GS + NILLVLG    IG ++         +   +         +L++ 
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLL-------LVALLLL  114

Query  220  ATLYASLSPSHSKTTTDNNILILSHGTAIILLVLYVMYLYFQLK  263
              L   L P   +         LS    ++LL+LY++YL FQ+ 
Sbjct  115  LLLLLLLLPLFGR---------LSRFEGLVLLLLYIVYLVFQIV  149



Lambda      K        H        a         alpha
   0.323    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00006746

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein....  83.8    8e-20


>CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein.  This 
is a family of sodium/calcium exchanger integral membrane proteins. 
This family covers the integral membrane regions of 
the proteins. Sodium/calcium exchangers regulate intracellular 
Ca2+ concentrations in many cells; cardiac myocytes, epithelial 
cells, neurons retinal rod photoreceptors and smooth 
muscle cells. Ca2+ is moved into or out of the cytosol depending 
on Na+ concentration. In humans and rats there are 3 isoforms; 
NCX1 NCX2 and NCX3.
Length=149

 Score = 83.8 bits (208),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 32/148 (22%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query  283  ATIALVVVTILVAICADYLVGSIDSIVEKTSMSRTFIGLILIPIVGNAAEHVTAVVVAWK  342
            + +  ++  +L+++ AD LV S + +     +S T +GL ++ +  +  E V++++ A +
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  343  GKMDLAIGVAVGSSLQIALFVTPFLVIMGWILNVEMTLNFHI---FETVAFFISSLVVTF  399
            G+ DLA+G  +GS++   L V     ++G +    + L   +          +  L++  
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLL  121

Query  400  LIQDGKSNYLEGGLCLGMYLILALAFYV  427
            L   G+ +  EG + L +Y++  +   V
Sbjct  122  LPLFGRLSRFEGLVLLLLYIVYLVFQIV  149



Lambda      K        H        a         alpha
   0.323    0.137    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00000673

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein....  83.8    8e-20


>CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein.  This 
is a family of sodium/calcium exchanger integral membrane proteins. 
This family covers the integral membrane regions of 
the proteins. Sodium/calcium exchangers regulate intracellular 
Ca2+ concentrations in many cells; cardiac myocytes, epithelial 
cells, neurons retinal rod photoreceptors and smooth 
muscle cells. Ca2+ is moved into or out of the cytosol depending 
on Na+ concentration. In humans and rats there are 3 isoforms; 
NCX1 NCX2 and NCX3.
Length=149

 Score = 83.8 bits (208),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 32/148 (22%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query  283  ATIALVVVTILVAICADYLVGSIDSIVEKTSMSRTFIGLILIPIVGNAAEHVTAVVVAWK  342
            + +  ++  +L+++ AD LV S + +     +S T +GL ++ +  +  E V++++ A +
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  343  GKMDLAIGVAVGSSLQIALFVTPFLVIMGWILNVEMTLNFHI---FETVAFFISSLVVTF  399
            G+ DLA+G  +GS++   L V     ++G +    + L   +          +  L++  
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLL  121

Query  400  LIQDGKSNYLEGGLCLGMYLILALAFYV  427
            L   G+ +  EG + L +Y++  +   V
Sbjct  122  LPLFGRLSRFEGLVLLLLYIVYLVFQIV  149



Lambda      K        H        a         alpha
   0.323    0.137    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00000671

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein....  83.8    8e-20


>CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein.  This 
is a family of sodium/calcium exchanger integral membrane proteins. 
This family covers the integral membrane regions of 
the proteins. Sodium/calcium exchangers regulate intracellular 
Ca2+ concentrations in many cells; cardiac myocytes, epithelial 
cells, neurons retinal rod photoreceptors and smooth 
muscle cells. Ca2+ is moved into or out of the cytosol depending 
on Na+ concentration. In humans and rats there are 3 isoforms; 
NCX1 NCX2 and NCX3.
Length=149

 Score = 83.8 bits (208),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 32/148 (22%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query  283  ATIALVVVTILVAICADYLVGSIDSIVEKTSMSRTFIGLILIPIVGNAAEHVTAVVVAWK  342
            + +  ++  +L+++ AD LV S + +     +S T +GL ++ +  +  E V++++ A +
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  343  GKMDLAIGVAVGSSLQIALFVTPFLVIMGWILNVEMTLNFHI---FETVAFFISSLVVTF  399
            G+ DLA+G  +GS++   L V     ++G +    + L   +          +  L++  
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLL  121

Query  400  LIQDGKSNYLEGGLCLGMYLILALAFYV  427
            L   G+ +  EG + L +Y++  +   V
Sbjct  122  LPLFGRLSRFEGLVLLLLYIVYLVFQIV  149



Lambda      K        H        a         alpha
   0.323    0.137    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00000675

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein....  83.8    8e-20


>CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein.  This 
is a family of sodium/calcium exchanger integral membrane proteins. 
This family covers the integral membrane regions of 
the proteins. Sodium/calcium exchangers regulate intracellular 
Ca2+ concentrations in many cells; cardiac myocytes, epithelial 
cells, neurons retinal rod photoreceptors and smooth 
muscle cells. Ca2+ is moved into or out of the cytosol depending 
on Na+ concentration. In humans and rats there are 3 isoforms; 
NCX1 NCX2 and NCX3.
Length=149

 Score = 83.8 bits (208),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 32/148 (22%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query  283  ATIALVVVTILVAICADYLVGSIDSIVEKTSMSRTFIGLILIPIVGNAAEHVTAVVVAWK  342
            + +  ++  +L+++ AD LV S + +     +S T +GL ++ +  +  E V++++ A +
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  343  GKMDLAIGVAVGSSLQIALFVTPFLVIMGWILNVEMTLNFHI---FETVAFFISSLVVTF  399
            G+ DLA+G  +GS++   L V     ++G +    + L   +          +  L++  
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLL  121

Query  400  LIQDGKSNYLEGGLCLGMYLILALAFYV  427
            L   G+ +  EG + L +Y++  +   V
Sbjct  122  LPLFGRLSRFEGLVLLLLYIVYLVFQIV  149



Lambda      K        H        a         alpha
   0.323    0.137    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00000676

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425505 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e. Th...  122     7e-35


>CDD:425505 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e.  This family 
contains ribosomal protein S7 from prokaryotes and S5 from 
eukaryotes.
Length=132

 Score = 122 bits (309),  Expect = 7e-35, Method: Composition-based stats.
 Identities = 44/152 (29%), Positives = 76/152 (50%), Gaps = 22/152 (14%)

Query  193  DPLLEQFTKLLMRDGKLSKAQKNMSFILDHLRTAPPPQPHPKRRLLPGPPSPQLPLNPVL  252
             PL+E+    LMRDGK S A++ +    D +                     +   NP+ 
Sbjct  3    SPLVEKLINRLMRDGKKSLAERIVYGAFDIIEE-------------------KTGKNPLE  43

Query  253  YLTLIVDSVAPLIKIRQQKGIAGGGAAVQIPVPLMQRQRRRTAIRWIIDASDKRRDSSFA  312
                 +++V P ++++ ++    GGA  Q+PV +   +R   A+RWII+A+ KR + S A
Sbjct  44   VFVKALENVKPRVEVKSRRV---GGATYQVPVEVRPERRVALALRWIIEAARKRSEKSMA  100

Query  313  QRVAHELVAVAEGRSGVWDRREAVHKLGVAGR  344
            +R+A+EL+  A GR     ++E  H++  A R
Sbjct  101  ERLANELIDAANGRGAAVKKKEETHRMAEANR  132



Lambda      K        H        a         alpha
   0.316    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00000666

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein....  76.9    6e-18


>CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein.  This 
is a family of sodium/calcium exchanger integral membrane proteins. 
This family covers the integral membrane regions of 
the proteins. Sodium/calcium exchangers regulate intracellular 
Ca2+ concentrations in many cells; cardiac myocytes, epithelial 
cells, neurons retinal rod photoreceptors and smooth 
muscle cells. Ca2+ is moved into or out of the cytosol depending 
on Na+ concentration. In humans and rats there are 3 isoforms; 
NCX1 NCX2 and NCX3.
Length=149

 Score = 76.9 bits (190),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 32/148 (22%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query  135  ATIALVVVTILVAICADYLVGSIDSIVEKTSMSRTFIGLILIPIVGNAAEHVTAVVVAWK  194
            + +  ++  +L+++ AD LV S + +     +S T +GL ++ +  +  E V++++ A +
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  195  GKMDLAIGVAVGSSLQIALFVTPFLVIMGWILNVEMTLNFHI---FETVAFFISSLVVTF  251
            G+ DLA+G  +GS++   L V     ++G +    + L   +          +  L++  
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLL  121

Query  252  LIQDGKSNYLEGGLCLGMYLILALAFYV  279
            L   G+ +  EG + L +Y++  +   V
Sbjct  122  LPLFGRLSRFEGLVLLLLYIVYLVFQIV  149



Lambda      K        H        a         alpha
   0.324    0.138    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00000677

Length=1065
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460985 pfam03600, CitMHS, Citrate transporter                     139     2e-36
CDD:460807 pfam03105, SPX, SPX domain. We have named this region ...  112     2e-27
CDD:279307 pfam00939, Na_sulph_symp, Sodium:sulfate symporter tra...  108     3e-25


>CDD:460985 pfam03600, CitMHS, Citrate transporter.  
Length=342

 Score = 139 bits (352),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 92/374 (25%), Positives = 167/374 (45%), Gaps = 44/374 (12%)

Query  640   LLWATEVIPLFVTSLLIPFLVVMLRIMKSADKPYHRLGPKDATGAAFSAMWTPVIMLLLG  699
             +L  TE +P  V +LL   L+V+L ++   +              A S + +P I+LLLG
Sbjct  2     VLIITEKLPRDVVALLGAVLLVLLGVLTPEE--------------ALSGIDSPTILLLLG  47

Query  700   GFTIAAALSKYDIARRMAMYVLSRAGSNPKVVLLTNMFVSMFLSMWISNVASPVLCYSII  759
                I A L +  +  R+A+ +L  AG  P+ +L+  M  +  LS ++SN  + ++   I+
Sbjct  48    MMIIGAILERTGLFDRLALKLLRLAGGKPRRLLVALMLATALLSAFLSNDGTVLIMIPIV  107

Query  760   QPLLR--NLPPDSNFAKALVLGIALAANVGGAASPIASPQNII---ALQNMYPSISWGTW  814
               L R   LPP       L++ +A AAN+GG A+PI  P NII   AL   +    +  +
Sbjct  108   LALARRLGLPP-----SPLLIALAFAANIGGTATPIGDPPNIIIASALGLSFGDFGFFMF  162

Query  815   FFISLPVCIIS----ILLIWLLLLATFKPGRDTTIVPIRPVKDQFSGVQYFVTIVTLSTI  870
               + + + ++     +L+   LL    +   +   +  R +KD        +  ++   +
Sbjct  163   PPVGVALLLVGLLPLLLIFRKLLPVRKEEEAELEELRKRAIKD------KLLLAISALVL  216

Query  871   GLWCVSHQLEHVFGDMGVIAIIPMVLFFGTGILNKED-FNNFLWTIIILAAGGLCLGKAV  929
              L  +       F  + V+A+   +L   TG+L+ E+      W+ ++  AG   L  A+
Sbjct  217   ALVILG------FLLLSVLALAGALLLLLTGVLDPEEALKAVDWSTLLFFAGLFILVGAL  270

Query  930   TSSGLLHTIAKAITARVDHFNLYGVLLVFSALILVMATFISHTVAALIMLPLVRQIGVGM  989
               +GL   +A A+        L   L +   L  +++ FIS+   A +M P++  +    
Sbjct  271   EKTGLADALADAL---GGLSGLLVALALILWLSALLSAFISNVPTAALMAPIIVGMAPAA  327

Query  990   DDPHPNLLVMASAL  1003
                 P+ L  A A+
Sbjct  328   GLGDPDPLAWALAV  341


>CDD:460807 pfam03105, SPX, SPX domain.  We have named this region the SPX 
domain after SYG1, Pho81 and XPR1. This 180 residue long domain 
is found at the amino terminus of a variety of proteins. 
In the yeast protein SYG1, the N-terminus directly binds 
to the G-protein beta subunit and inhibits transduction of the 
mating pheromone signal. Similarly, the N-terminus of the 
human XPR1 protein binds directly to the beta subunit of the 
G-protein heterotrimer leading to increased production of 
cAMP. These findings suggest that all the members of this family 
are involved in G-protein associated signal transduction. 
The N-termini of several proteins involved in the regulation 
of phosphate transport, including the putative phosphate 
level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 
from Neurospora crassa, are also members of this family. The 
SPX domain of S. cerevisiae low-affinity phosphate transporters 
Pho87 and Pho90 auto-regulates uptake and prevents efflux. 
This SPX dependent inhibition is mediated by the physical 
interaction with Spl2 NUC-2 contains several ankyrin repeats 
pfam00023. Several members of this family are annotated 
as XPR1 proteins: the xenotropic and polytropic retrovirus receptor 
confers susceptibility to infection with murine xenotropic 
and polytropic leukaemia viruses (MLV). Infection by 
these retroviruses can inhibit XPR1-mediated cAMP signalling 
and result in cell toxicity and death. The similarity between 
SYG1, phosphate regulators and XPR1 sequences has been previously 
noted, as has the additional similarity to several 
predicted proteins, of unknown function, from Drosophila melanogaster, 
Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces 
pombe, and Saccharomyces cerevisiae, and many 
other diverse organisms. In addition, given the similarities 
between XPR1 and SYG1 and phosphate regulatory proteins, 
it has been proposed that XPR1 might be involved in G-protein 
associated signal transduction and may itself function as 
a phosphate sensor.
Length=339

 Score = 112 bits (282),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 106/349 (30%), Gaps = 99/349 (28%)

Query  222  MKFSHSIQFNAVPDWSAYYIAYSNLKKLIY------------------------------  251
            MKF   ++ N VP+W   Y+ Y  LKKLI                               
Sbjct  1    MKFGKELEENLVPEWRDAYLDYKQLKKLIKKIQRELESTPPSSSPSSSDSGSAASPSDST  60

Query  252  --------------------SLEQQARKANGQAQSDVESAPLLSETPT------------  279
                                 L      ++  + SD  S+   S + +            
Sbjct  61   TSLPLRDPLSRSSSLDRAFGGLVPSPPSSSSSSSSDSSSSSNSSSSSSSSSPSLLRRLPS  120

Query  280  ---------------PEAVFRRALNAELEKICSFYEVKESEILKEVEDVVRDTEEYSSKT  324
                            E  F   L++EL K+  FY+ KE E L+ +E + +  E      
Sbjct  121  ESDDSSESYETTPLDSEDEFFERLDSELNKVNKFYKEKEEEFLERLEALNKQLEALR---  177

Query  325  DGADVDPMSDAMIKSRRMSSNSRPRTSGSYRDYAEEETEDDDDAADSDDEHHPPTGQGGV  384
                       +I+  +          G Y   +       +  + +  E          
Sbjct  178  ------DFRIKLIRESKSDLYRWREPFGLYSSDSSVFFSTSELDSGNSSESSVDDEVEEE  231

Query  385  PSSGRSRSDLSDSRFM-----ADSRILGFDRRGSGGHDEHCKDPGFLELYN-EGLS----  434
                   S +           A  ++   DR   G  D   +D  +L   N   L     
Sbjct  232  LERNGWISPIKSKDKKKRPSEALDKVKTPDRTLKGFLDASRRD--YLNRINKVNLRKAKK  289

Query  435  -LRQRAVNAYVSLCGLKSYIQLNKTGFSKALKKFDKILDCNLRREYMSS  482
             L++  +  Y  L  LKSY +LN+T F K LKKFDK+   N  ++YM  
Sbjct  290  KLKKAFIELYRGLELLKSYSELNRTAFRKILKKFDKVTSLNASKDYMKE  338


>CDD:279307 pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane 
region.  There are also some members in this family that 
do not match the Prosite motif, and belong to the subfamily 
SODIT1.
Length=472

 Score = 108 bits (272),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 97/478 (20%), Positives = 185/478 (39%), Gaps = 48/478 (10%)

Query  607   LIVILAVFII--LLYAPIMDKPEQQNCLAMLVFVSLLWATEVIPLFVTSLLIPFLVVMLR  664
             L+ +LAV +I  LL AP     +  +  A+ +   + W  E +P+ V +L    L  +L 
Sbjct  7     LLALLAVLLIILLLPAPDGLPSKAWHLFAIFIATIVGWILEPLPMAVIALFAISLSAILI  66

Query  665   IMKSADKPYHRLGPKDATGAAFSAMWTPVIMLLLGGFTIAAALSKYDIARRMAMYVLSRA  724
                 A               A S   +    L+ G F I+AA  K  + RR+A+ ++ + 
Sbjct  67    GTLLAKA----------LSWALSGFSSTTTWLVFGAFFISAAFEKTGLGRRIALVLVKKM  116

Query  725   GSNPKVVLLTNMFVSMFLSMWISNVASPVLCYSIIQPLLRNLPP--DSNFAKA-------  775
             G     +    +F    L +  +  ++      I+ P++ +LPP   S+  K        
Sbjct  117   GKRTLGLGYGLVFS--DLLLAPATPSNTARAGGIVFPIIMSLPPAFGSDPEKGSERRIGA  174

Query  776   -LVLGIALAANVGGAASPIASPQNIIALQNMYP----SISWGTWFFISLPVCIISILLIW  830
              L+  +  + ++  A    A   N++ L  M      +I+W +WF  ++P  +I +LL  
Sbjct  175   YLMWTVYQSTSITSAMFLTAMAPNLLLLGLMNSILGVTITWASWFLAAIPPGVILLLLAP  234

Query  831   LLLLATFKPGRDTTIVPIRPVKDQ------FSGVQYFVTIVTLSTIGLWCVSHQLEHVFG  884
             LLL   + P   +        K +       +  +  +  + +  + LW     L ++  
Sbjct  235   LLLYVLYPPEIKSVPDAKAIAKTELKELGPMTFREKALLGLFVLLLLLWIFGGSL-NI--  291

Query  885   DMGVIAIIPMVLFFGTGILNKEDF--NNFLWTIIILAAGGLCLGKAVTSSGLLHTIAKAI  942
             D   +AII + L     IL+ +D   N   W  +I   G + L   +  SG +  +   +
Sbjct  292   DATTVAIIGLALMLLLRILDWKDIVKNKGAWNTLIWLGGLIMLANGLERSGFIEWLGNTL  351

Query  943   TARVDHFN-LYGVLLVFSALILVMATFISHTVAALIMLPLVRQIGVGMDDPHPNLLVMAS  1001
             +  +  F+     +++ S   L    F S T     MLP+   +   +    P L  +  
Sbjct  352   STSLSGFSPAMAFIIILSLFYLSHYLFASATAHTAAMLPIFAAVAQAIPGAPPLLAALLL  411

Query  1002  ALMCSVA-MALPTSGFPNMTAIMTEVPQTGQRYLHVRHFFTRGIPASLMSWAVIVTIG  1058
                 S+     P    P            G  YL V+ ++  G   +++   +++ +G
Sbjct  412   GFAISLGGFLTPYGTGPGPIYF-------GSGYLKVKDWWRIGAILTIIGLLILLLLG  462



Lambda      K        H        a         alpha
   0.321    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1371983844


Query= TCONS_00000678

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein....  87.7    4e-21


>CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein.  This 
is a family of sodium/calcium exchanger integral membrane proteins. 
This family covers the integral membrane regions of 
the proteins. Sodium/calcium exchangers regulate intracellular 
Ca2+ concentrations in many cells; cardiac myocytes, epithelial 
cells, neurons retinal rod photoreceptors and smooth 
muscle cells. Ca2+ is moved into or out of the cytosol depending 
on Na+ concentration. In humans and rats there are 3 isoforms; 
NCX1 NCX2 and NCX3.
Length=149

 Score = 87.7 bits (218),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 32/148 (22%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query  305  ATIALVVVTILVAICADYLVGSIDSIVEKTSMSRTFIGLILIPIVGNAAEHVTAVVVAWK  364
            + +  ++  +L+++ AD LV S + +     +S T +GL ++ +  +  E V++++ A +
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  365  GKMDLAIGVAVGSSLQIALFVTPFLVIMGWILNVEMTLNFHI---FETVAFFISSLVVTF  421
            G+ DLA+G  +GS++   L V     ++G +    + L   +          +  L++  
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLL  121

Query  422  LIQDGKSNYLEGGLCLGMYLILALAFYV  449
            L   G+ +  EG + L +Y++  +   V
Sbjct  122  LPLFGRLSRFEGLVLLLLYIVYLVFQIV  149


 Score = 60.3 bits (147),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 73/164 (45%), Gaps = 19/164 (12%)

Query  105  STVVFSLNFLAIIPLASLLSFATEELAATMG---QALGGLMNATFGNAVELIVSIIALKD  161
            S ++F L  L I   A LL  + E LA  +G     LG  + A   +  EL+ SIIA   
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  162  NQIRVVQASMLGSILSNILLVLGCCFFIGGLRFSEQTFNSTVASTMSSMMTVASASLIIP  221
             +  +   +++GS + NILLVLG    IG ++         +   +         +L++ 
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLL-------LVALLLL  114

Query  222  ATLYASLSPSHSKTTTDNNILILSHGTAIILLVLYVMYLYFQLK  265
              L   L P   +         LS    ++LL+LY++YL FQ+ 
Sbjct  115  LLLLLLLLPLFGR---------LSRFEGLVLLLLYIVYLVFQIV  149



Lambda      K        H        a         alpha
   0.323    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 570537888


Query= TCONS_00000679

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein....  86.5    9e-21


>CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein.  This 
is a family of sodium/calcium exchanger integral membrane proteins. 
This family covers the integral membrane regions of 
the proteins. Sodium/calcium exchangers regulate intracellular 
Ca2+ concentrations in many cells; cardiac myocytes, epithelial 
cells, neurons retinal rod photoreceptors and smooth 
muscle cells. Ca2+ is moved into or out of the cytosol depending 
on Na+ concentration. In humans and rats there are 3 isoforms; 
NCX1 NCX2 and NCX3.
Length=149

 Score = 86.5 bits (215),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 32/148 (22%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query  305  ATIALVVVTILVAICADYLVGSIDSIVEKTSMSRTFIGLILIPIVGNAAEHVTAVVVAWK  364
            + +  ++  +L+++ AD LV S + +     +S T +GL ++ +  +  E V++++ A +
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  365  GKMDLAIGVAVGSSLQIALFVTPFLVIMGWILNVEMTLNFHI---FETVAFFISSLVVTF  421
            G+ DLA+G  +GS++   L V     ++G +    + L   +          +  L++  
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLL  121

Query  422  LIQDGKSNYLEGGLCLGMYLILALAFYV  449
            L   G+ +  EG + L +Y++  +   V
Sbjct  122  LPLFGRLSRFEGLVLLLLYIVYLVFQIV  149


 Score = 59.5 bits (145),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 73/164 (45%), Gaps = 19/164 (12%)

Query  105  STVVFSLNFLAIIPLASLLSFATEELAATMG---QALGGLMNATFGNAVELIVSIIALKD  161
            S ++F L  L I   A LL  + E LA  +G     LG  + A   +  EL+ SIIA   
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  162  NQIRVVQASMLGSILSNILLVLGCCFFIGGLRFSEQTFNSTVASTMSSMMTVASASLIIP  221
             +  +   +++GS + NILLVLG    IG ++         +   +         +L++ 
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLL-------LVALLLL  114

Query  222  ATLYASLSPSHSKTTTDNNILILSHGTAIILLVLYVMYLYFQLK  265
              L   L P   +         LS    ++LL+LY++YL FQ+ 
Sbjct  115  LLLLLLLLPLFGR---------LSRFEGLVLLLLYIVYLVFQIV  149



Lambda      K        H        a         alpha
   0.323    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0836    0.140     1.90     42.6     43.6 

Effective search space used: 570537888


Query= TCONS_00006747

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein....  83.8    8e-20


>CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein.  This 
is a family of sodium/calcium exchanger integral membrane proteins. 
This family covers the integral membrane regions of 
the proteins. Sodium/calcium exchangers regulate intracellular 
Ca2+ concentrations in many cells; cardiac myocytes, epithelial 
cells, neurons retinal rod photoreceptors and smooth 
muscle cells. Ca2+ is moved into or out of the cytosol depending 
on Na+ concentration. In humans and rats there are 3 isoforms; 
NCX1 NCX2 and NCX3.
Length=149

 Score = 83.8 bits (208),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 32/148 (22%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query  283  ATIALVVVTILVAICADYLVGSIDSIVEKTSMSRTFIGLILIPIVGNAAEHVTAVVVAWK  342
            + +  ++  +L+++ AD LV S + +     +S T +GL ++ +  +  E V++++ A +
Sbjct  2    SLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAALR  61

Query  343  GKMDLAIGVAVGSSLQIALFVTPFLVIMGWILNVEMTLNFHI---FETVAFFISSLVVTF  399
            G+ DLA+G  +GS++   L V     ++G +    + L   +          +  L++  
Sbjct  62   GEPDLALGNVIGSNIFNILLVLGLSALIGPVKVDSLLLKLDLGVLLLVALLLLLLLLLLL  121

Query  400  LIQDGKSNYLEGGLCLGMYLILALAFYV  427
            L   G+ +  EG + L +Y++  +   V
Sbjct  122  LPLFGRLSRFEGLVLLLLYIVYLVFQIV  149



Lambda      K        H        a         alpha
   0.323    0.137    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00006748

Length=1067
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460985 pfam03600, CitMHS, Citrate transporter                     138     2e-36
CDD:460807 pfam03105, SPX, SPX domain. We have named this region ...  112     2e-27
CDD:279307 pfam00939, Na_sulph_symp, Sodium:sulfate symporter tra...  108     4e-25


>CDD:460985 pfam03600, CitMHS, Citrate transporter.  
Length=342

 Score = 138 bits (351),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 92/374 (25%), Positives = 167/374 (45%), Gaps = 44/374 (12%)

Query  640   LLWATEVIPLFVTSLLIPFLVVMLRIMKSADKPYHRLGPKDATGAAFSAMWTPVIMLLLG  699
             +L  TE +P  V +LL   L+V+L ++   +              A S + +P I+LLLG
Sbjct  2     VLIITEKLPRDVVALLGAVLLVLLGVLTPEE--------------ALSGIDSPTILLLLG  47

Query  700   GFTIAAALSKYDIARRMAMYVLSRAGSNPKVVLLTNMFVSMFLSMWISNVASPVLCYSII  759
                I A L +  +  R+A+ +L  AG  P+ +L+  M  +  LS ++SN  + ++   I+
Sbjct  48    MMIIGAILERTGLFDRLALKLLRLAGGKPRRLLVALMLATALLSAFLSNDGTVLIMIPIV  107

Query  760   QPLLR--NLPPDSNFAKALVLGIALAANVGGAASPIASPQNII---ALQNMYPSISWGTW  814
               L R   LPP       L++ +A AAN+GG A+PI  P NII   AL   +    +  +
Sbjct  108   LALARRLGLPP-----SPLLIALAFAANIGGTATPIGDPPNIIIASALGLSFGDFGFFMF  162

Query  815   FFISLPVCIIS----ILLIWLLLLATFKPGRDTTIVPIRPVKDQFSGVQYFVTIVTLSTI  870
               + + + ++     +L+   LL    +   +   +  R +KD        +  ++   +
Sbjct  163   PPVGVALLLVGLLPLLLIFRKLLPVRKEEEAELEELRKRAIKD------KLLLAISALVL  216

Query  871   GLWCVSHQLEHVFGDMGVIAIIPMVLFFGTGILNKED-FNNFLWTIIILAAGGLCLGKAV  929
              L  +       F  + V+A+   +L   TG+L+ E+      W+ ++  AG   L  A+
Sbjct  217   ALVILG------FLLLSVLALAGALLLLLTGVLDPEEALKAVDWSTLLFFAGLFILVGAL  270

Query  930   TSSGLLHTIAKAITARVDHFNLYGVLLVFSALILVMATFISHTVAALIMLPLVRQIGVGM  989
               +GL   +A A+        L   L +   L  +++ FIS+   A +M P++  +    
Sbjct  271   EKTGLADALADAL---GGLSGLLVALALILWLSALLSAFISNVPTAALMAPIIVGMAPAA  327

Query  990   DDPHPNLLVMASAL  1003
                 P+ L  A A+
Sbjct  328   GLGDPDPLAWALAV  341


>CDD:460807 pfam03105, SPX, SPX domain.  We have named this region the SPX 
domain after SYG1, Pho81 and XPR1. This 180 residue long domain 
is found at the amino terminus of a variety of proteins. 
In the yeast protein SYG1, the N-terminus directly binds 
to the G-protein beta subunit and inhibits transduction of the 
mating pheromone signal. Similarly, the N-terminus of the 
human XPR1 protein binds directly to the beta subunit of the 
G-protein heterotrimer leading to increased production of 
cAMP. These findings suggest that all the members of this family 
are involved in G-protein associated signal transduction. 
The N-termini of several proteins involved in the regulation 
of phosphate transport, including the putative phosphate 
level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 
from Neurospora crassa, are also members of this family. The 
SPX domain of S. cerevisiae low-affinity phosphate transporters 
Pho87 and Pho90 auto-regulates uptake and prevents efflux. 
This SPX dependent inhibition is mediated by the physical 
interaction with Spl2 NUC-2 contains several ankyrin repeats 
pfam00023. Several members of this family are annotated 
as XPR1 proteins: the xenotropic and polytropic retrovirus receptor 
confers susceptibility to infection with murine xenotropic 
and polytropic leukaemia viruses (MLV). Infection by 
these retroviruses can inhibit XPR1-mediated cAMP signalling 
and result in cell toxicity and death. The similarity between 
SYG1, phosphate regulators and XPR1 sequences has been previously 
noted, as has the additional similarity to several 
predicted proteins, of unknown function, from Drosophila melanogaster, 
Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces 
pombe, and Saccharomyces cerevisiae, and many 
other diverse organisms. In addition, given the similarities 
between XPR1 and SYG1 and phosphate regulatory proteins, 
it has been proposed that XPR1 might be involved in G-protein 
associated signal transduction and may itself function as 
a phosphate sensor.
Length=339

 Score = 112 bits (282),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 106/349 (30%), Gaps = 99/349 (28%)

Query  222  MKFSHSIQFNAVPDWSAYYIAYSNLKKLIY------------------------------  251
            MKF   ++ N VP+W   Y+ Y  LKKLI                               
Sbjct  1    MKFGKELEENLVPEWRDAYLDYKQLKKLIKKIQRELESTPPSSSPSSSDSGSAASPSDST  60

Query  252  --------------------SLEQQARKANGQAQSDVESAPLLSETPT------------  279
                                 L      ++  + SD  S+   S + +            
Sbjct  61   TSLPLRDPLSRSSSLDRAFGGLVPSPPSSSSSSSSDSSSSSNSSSSSSSSSPSLLRRLPS  120

Query  280  ---------------PEAVFRRALNAELEKICSFYEVKESEILKEVEDVVRDTEEYSSKT  324
                            E  F   L++EL K+  FY+ KE E L+ +E + +  E      
Sbjct  121  ESDDSSESYETTPLDSEDEFFERLDSELNKVNKFYKEKEEEFLERLEALNKQLEALR---  177

Query  325  DGADVDPMSDAMIKSRRMSSNSRPRTSGSYRDYAEEETEDDDDAADSDDEHHPPTGQGGV  384
                       +I+  +          G Y   +       +  + +  E          
Sbjct  178  ------DFRIKLIRESKSDLYRWREPFGLYSSDSSVFFSTSELDSGNSSESSVDDEVEEE  231

Query  385  PSSGRSRSDLSDSRFM-----ADSRILGFDRRGSGGHDEHCKDPGFLELYN-EGLS----  434
                   S +           A  ++   DR   G  D   +D  +L   N   L     
Sbjct  232  LERNGWISPIKSKDKKKRPSEALDKVKTPDRTLKGFLDASRRD--YLNRINKVNLRKAKK  289

Query  435  -LRQRAVNAYVSLCGLKSYIQLNKTGFSKALKKFDKILDCNLRREYMSS  482
             L++  +  Y  L  LKSY +LN+T F K LKKFDK+   N  ++YM  
Sbjct  290  KLKKAFIELYRGLELLKSYSELNRTAFRKILKKFDKVTSLNASKDYMKE  338


>CDD:279307 pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane 
region.  There are also some members in this family that 
do not match the Prosite motif, and belong to the subfamily 
SODIT1.
Length=472

 Score = 108 bits (272),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 97/478 (20%), Positives = 185/478 (39%), Gaps = 48/478 (10%)

Query  607   LIVILAVFII--LLYAPIMDKPEQQNCLAMLVFVSLLWATEVIPLFVTSLLIPFLVVMLR  664
             L+ +LAV +I  LL AP     +  +  A+ +   + W  E +P+ V +L    L  +L 
Sbjct  7     LLALLAVLLIILLLPAPDGLPSKAWHLFAIFIATIVGWILEPLPMAVIALFAISLSAILI  66

Query  665   IMKSADKPYHRLGPKDATGAAFSAMWTPVIMLLLGGFTIAAALSKYDIARRMAMYVLSRA  724
                 A               A S   +    L+ G F I+AA  K  + RR+A+ ++ + 
Sbjct  67    GTLLAKA----------LSWALSGFSSTTTWLVFGAFFISAAFEKTGLGRRIALVLVKKM  116

Query  725   GSNPKVVLLTNMFVSMFLSMWISNVASPVLCYSIIQPLLRNLPP--DSNFAKA-------  775
             G     +    +F    L +  +  ++      I+ P++ +LPP   S+  K        
Sbjct  117   GKRTLGLGYGLVFS--DLLLAPATPSNTARAGGIVFPIIMSLPPAFGSDPEKGSERRIGA  174

Query  776   -LVLGIALAANVGGAASPIASPQNIIALQNMYP----SISWGTWFFISLPVCIISILLIW  830
              L+  +  + ++  A    A   N++ L  M      +I+W +WF  ++P  +I +LL  
Sbjct  175   YLMWTVYQSTSITSAMFLTAMAPNLLLLGLMNSILGVTITWASWFLAAIPPGVILLLLAP  234

Query  831   LLLLATFKPGRDTTIVPIRPVKDQ------FSGVQYFVTIVTLSTIGLWCVSHQLEHVFG  884
             LLL   + P   +        K +       +  +  +  + +  + LW     L ++  
Sbjct  235   LLLYVLYPPEIKSVPDAKAIAKTELKELGPMTFREKALLGLFVLLLLLWIFGGSL-NI--  291

Query  885   DMGVIAIIPMVLFFGTGILNKEDF--NNFLWTIIILAAGGLCLGKAVTSSGLLHTIAKAI  942
             D   +AII + L     IL+ +D   N   W  +I   G + L   +  SG +  +   +
Sbjct  292   DATTVAIIGLALMLLLRILDWKDIVKNKGAWNTLIWLGGLIMLANGLERSGFIEWLGNTL  351

Query  943   TARVDHFN-LYGVLLVFSALILVMATFISHTVAALIMLPLVRQIGVGMDDPHPNLLVMAS  1001
             +  +  F+     +++ S   L    F S T     MLP+   +   +    P L  +  
Sbjct  352   STSLSGFSPAMAFIIILSLFYLSHYLFASATAHTAAMLPIFAAVAQAIPGAPPLLAALLL  411

Query  1002  ALMCSVA-MALPTSGFPNMTAIMTEVPQTGQRYLHVRHFFTRGIPASLMSWAVIVTIG  1058
                 S+     P    P            G  YL V+ ++  G   +++   +++ +G
Sbjct  412   GFAISLGGFLTPYGTGPGPIYF-------GSGYLKVKDWWRIGAILTIIGLLILLLLG  462



Lambda      K        H        a         alpha
   0.321    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1374815596


Query= TCONS_00006749

Length=250


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00006750

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425505 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e. Th...  122     7e-35


>CDD:425505 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e.  This family 
contains ribosomal protein S7 from prokaryotes and S5 from 
eukaryotes.
Length=132

 Score = 122 bits (309),  Expect = 7e-35, Method: Composition-based stats.
 Identities = 44/152 (29%), Positives = 76/152 (50%), Gaps = 22/152 (14%)

Query  193  DPLLEQFTKLLMRDGKLSKAQKNMSFILDHLRTAPPPQPHPKRRLLPGPPSPQLPLNPVL  252
             PL+E+    LMRDGK S A++ +    D +                     +   NP+ 
Sbjct  3    SPLVEKLINRLMRDGKKSLAERIVYGAFDIIEE-------------------KTGKNPLE  43

Query  253  YLTLIVDSVAPLIKIRQQKGIAGGGAAVQIPVPLMQRQRRRTAIRWIIDASDKRRDSSFA  312
                 +++V P ++++ ++    GGA  Q+PV +   +R   A+RWII+A+ KR + S A
Sbjct  44   VFVKALENVKPRVEVKSRRV---GGATYQVPVEVRPERRVALALRWIIEAARKRSEKSMA  100

Query  313  QRVAHELVAVAEGRSGVWDRREAVHKLGVAGR  344
            +R+A+EL+  A GR     ++E  H++  A R
Sbjct  101  ERLANELIDAANGRGAAVKKKEETHRMAEANR  132



Lambda      K        H        a         alpha
   0.316    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00006751

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00000681

Length=1067
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460985 pfam03600, CitMHS, Citrate transporter                     138     2e-36
CDD:460807 pfam03105, SPX, SPX domain. We have named this region ...  112     2e-27
CDD:279307 pfam00939, Na_sulph_symp, Sodium:sulfate symporter tra...  108     4e-25


>CDD:460985 pfam03600, CitMHS, Citrate transporter.  
Length=342

 Score = 138 bits (351),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 92/374 (25%), Positives = 167/374 (45%), Gaps = 44/374 (12%)

Query  640   LLWATEVIPLFVTSLLIPFLVVMLRIMKSADKPYHRLGPKDATGAAFSAMWTPVIMLLLG  699
             +L  TE +P  V +LL   L+V+L ++   +              A S + +P I+LLLG
Sbjct  2     VLIITEKLPRDVVALLGAVLLVLLGVLTPEE--------------ALSGIDSPTILLLLG  47

Query  700   GFTIAAALSKYDIARRMAMYVLSRAGSNPKVVLLTNMFVSMFLSMWISNVASPVLCYSII  759
                I A L +  +  R+A+ +L  AG  P+ +L+  M  +  LS ++SN  + ++   I+
Sbjct  48    MMIIGAILERTGLFDRLALKLLRLAGGKPRRLLVALMLATALLSAFLSNDGTVLIMIPIV  107

Query  760   QPLLR--NLPPDSNFAKALVLGIALAANVGGAASPIASPQNII---ALQNMYPSISWGTW  814
               L R   LPP       L++ +A AAN+GG A+PI  P NII   AL   +    +  +
Sbjct  108   LALARRLGLPP-----SPLLIALAFAANIGGTATPIGDPPNIIIASALGLSFGDFGFFMF  162

Query  815   FFISLPVCIIS----ILLIWLLLLATFKPGRDTTIVPIRPVKDQFSGVQYFVTIVTLSTI  870
               + + + ++     +L+   LL    +   +   +  R +KD        +  ++   +
Sbjct  163   PPVGVALLLVGLLPLLLIFRKLLPVRKEEEAELEELRKRAIKD------KLLLAISALVL  216

Query  871   GLWCVSHQLEHVFGDMGVIAIIPMVLFFGTGILNKED-FNNFLWTIIILAAGGLCLGKAV  929
              L  +       F  + V+A+   +L   TG+L+ E+      W+ ++  AG   L  A+
Sbjct  217   ALVILG------FLLLSVLALAGALLLLLTGVLDPEEALKAVDWSTLLFFAGLFILVGAL  270

Query  930   TSSGLLHTIAKAITARVDHFNLYGVLLVFSALILVMATFISHTVAALIMLPLVRQIGVGM  989
               +GL   +A A+        L   L +   L  +++ FIS+   A +M P++  +    
Sbjct  271   EKTGLADALADAL---GGLSGLLVALALILWLSALLSAFISNVPTAALMAPIIVGMAPAA  327

Query  990   DDPHPNLLVMASAL  1003
                 P+ L  A A+
Sbjct  328   GLGDPDPLAWALAV  341


>CDD:460807 pfam03105, SPX, SPX domain.  We have named this region the SPX 
domain after SYG1, Pho81 and XPR1. This 180 residue long domain 
is found at the amino terminus of a variety of proteins. 
In the yeast protein SYG1, the N-terminus directly binds 
to the G-protein beta subunit and inhibits transduction of the 
mating pheromone signal. Similarly, the N-terminus of the 
human XPR1 protein binds directly to the beta subunit of the 
G-protein heterotrimer leading to increased production of 
cAMP. These findings suggest that all the members of this family 
are involved in G-protein associated signal transduction. 
The N-termini of several proteins involved in the regulation 
of phosphate transport, including the putative phosphate 
level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 
from Neurospora crassa, are also members of this family. The 
SPX domain of S. cerevisiae low-affinity phosphate transporters 
Pho87 and Pho90 auto-regulates uptake and prevents efflux. 
This SPX dependent inhibition is mediated by the physical 
interaction with Spl2 NUC-2 contains several ankyrin repeats 
pfam00023. Several members of this family are annotated 
as XPR1 proteins: the xenotropic and polytropic retrovirus receptor 
confers susceptibility to infection with murine xenotropic 
and polytropic leukaemia viruses (MLV). Infection by 
these retroviruses can inhibit XPR1-mediated cAMP signalling 
and result in cell toxicity and death. The similarity between 
SYG1, phosphate regulators and XPR1 sequences has been previously 
noted, as has the additional similarity to several 
predicted proteins, of unknown function, from Drosophila melanogaster, 
Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces 
pombe, and Saccharomyces cerevisiae, and many 
other diverse organisms. In addition, given the similarities 
between XPR1 and SYG1 and phosphate regulatory proteins, 
it has been proposed that XPR1 might be involved in G-protein 
associated signal transduction and may itself function as 
a phosphate sensor.
Length=339

 Score = 112 bits (282),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 106/349 (30%), Gaps = 99/349 (28%)

Query  222  MKFSHSIQFNAVPDWSAYYIAYSNLKKLIY------------------------------  251
            MKF   ++ N VP+W   Y+ Y  LKKLI                               
Sbjct  1    MKFGKELEENLVPEWRDAYLDYKQLKKLIKKIQRELESTPPSSSPSSSDSGSAASPSDST  60

Query  252  --------------------SLEQQARKANGQAQSDVESAPLLSETPT------------  279
                                 L      ++  + SD  S+   S + +            
Sbjct  61   TSLPLRDPLSRSSSLDRAFGGLVPSPPSSSSSSSSDSSSSSNSSSSSSSSSPSLLRRLPS  120

Query  280  ---------------PEAVFRRALNAELEKICSFYEVKESEILKEVEDVVRDTEEYSSKT  324
                            E  F   L++EL K+  FY+ KE E L+ +E + +  E      
Sbjct  121  ESDDSSESYETTPLDSEDEFFERLDSELNKVNKFYKEKEEEFLERLEALNKQLEALR---  177

Query  325  DGADVDPMSDAMIKSRRMSSNSRPRTSGSYRDYAEEETEDDDDAADSDDEHHPPTGQGGV  384
                       +I+  +          G Y   +       +  + +  E          
Sbjct  178  ------DFRIKLIRESKSDLYRWREPFGLYSSDSSVFFSTSELDSGNSSESSVDDEVEEE  231

Query  385  PSSGRSRSDLSDSRFM-----ADSRILGFDRRGSGGHDEHCKDPGFLELYN-EGLS----  434
                   S +           A  ++   DR   G  D   +D  +L   N   L     
Sbjct  232  LERNGWISPIKSKDKKKRPSEALDKVKTPDRTLKGFLDASRRD--YLNRINKVNLRKAKK  289

Query  435  -LRQRAVNAYVSLCGLKSYIQLNKTGFSKALKKFDKILDCNLRREYMSS  482
             L++  +  Y  L  LKSY +LN+T F K LKKFDK+   N  ++YM  
Sbjct  290  KLKKAFIELYRGLELLKSYSELNRTAFRKILKKFDKVTSLNASKDYMKE  338


>CDD:279307 pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane 
region.  There are also some members in this family that 
do not match the Prosite motif, and belong to the subfamily 
SODIT1.
Length=472

 Score = 108 bits (272),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 97/478 (20%), Positives = 185/478 (39%), Gaps = 48/478 (10%)

Query  607   LIVILAVFII--LLYAPIMDKPEQQNCLAMLVFVSLLWATEVIPLFVTSLLIPFLVVMLR  664
             L+ +LAV +I  LL AP     +  +  A+ +   + W  E +P+ V +L    L  +L 
Sbjct  7     LLALLAVLLIILLLPAPDGLPSKAWHLFAIFIATIVGWILEPLPMAVIALFAISLSAILI  66

Query  665   IMKSADKPYHRLGPKDATGAAFSAMWTPVIMLLLGGFTIAAALSKYDIARRMAMYVLSRA  724
                 A               A S   +    L+ G F I+AA  K  + RR+A+ ++ + 
Sbjct  67    GTLLAKA----------LSWALSGFSSTTTWLVFGAFFISAAFEKTGLGRRIALVLVKKM  116

Query  725   GSNPKVVLLTNMFVSMFLSMWISNVASPVLCYSIIQPLLRNLPP--DSNFAKA-------  775
             G     +    +F    L +  +  ++      I+ P++ +LPP   S+  K        
Sbjct  117   GKRTLGLGYGLVFS--DLLLAPATPSNTARAGGIVFPIIMSLPPAFGSDPEKGSERRIGA  174

Query  776   -LVLGIALAANVGGAASPIASPQNIIALQNMYP----SISWGTWFFISLPVCIISILLIW  830
              L+  +  + ++  A    A   N++ L  M      +I+W +WF  ++P  +I +LL  
Sbjct  175   YLMWTVYQSTSITSAMFLTAMAPNLLLLGLMNSILGVTITWASWFLAAIPPGVILLLLAP  234

Query  831   LLLLATFKPGRDTTIVPIRPVKDQ------FSGVQYFVTIVTLSTIGLWCVSHQLEHVFG  884
             LLL   + P   +        K +       +  +  +  + +  + LW     L ++  
Sbjct  235   LLLYVLYPPEIKSVPDAKAIAKTELKELGPMTFREKALLGLFVLLLLLWIFGGSL-NI--  291

Query  885   DMGVIAIIPMVLFFGTGILNKEDF--NNFLWTIIILAAGGLCLGKAVTSSGLLHTIAKAI  942
             D   +AII + L     IL+ +D   N   W  +I   G + L   +  SG +  +   +
Sbjct  292   DATTVAIIGLALMLLLRILDWKDIVKNKGAWNTLIWLGGLIMLANGLERSGFIEWLGNTL  351

Query  943   TARVDHFN-LYGVLLVFSALILVMATFISHTVAALIMLPLVRQIGVGMDDPHPNLLVMAS  1001
             +  +  F+     +++ S   L    F S T     MLP+   +   +    P L  +  
Sbjct  352   STSLSGFSPAMAFIIILSLFYLSHYLFASATAHTAAMLPIFAAVAQAIPGAPPLLAALLL  411

Query  1002  ALMCSVA-MALPTSGFPNMTAIMTEVPQTGQRYLHVRHFFTRGIPASLMSWAVIVTIG  1058
                 S+     P    P            G  YL V+ ++  G   +++   +++ +G
Sbjct  412   GFAISLGGFLTPYGTGPGPIYF-------GSGYLKVKDWWRIGAILTIIGLLILLLLG  462



Lambda      K        H        a         alpha
   0.321    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1374815596


Query= TCONS_00000682

Length=1067
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460985 pfam03600, CitMHS, Citrate transporter                     138     2e-36
CDD:460807 pfam03105, SPX, SPX domain. We have named this region ...  112     2e-27
CDD:279307 pfam00939, Na_sulph_symp, Sodium:sulfate symporter tra...  108     4e-25


>CDD:460985 pfam03600, CitMHS, Citrate transporter.  
Length=342

 Score = 138 bits (351),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 92/374 (25%), Positives = 167/374 (45%), Gaps = 44/374 (12%)

Query  640   LLWATEVIPLFVTSLLIPFLVVMLRIMKSADKPYHRLGPKDATGAAFSAMWTPVIMLLLG  699
             +L  TE +P  V +LL   L+V+L ++   +              A S + +P I+LLLG
Sbjct  2     VLIITEKLPRDVVALLGAVLLVLLGVLTPEE--------------ALSGIDSPTILLLLG  47

Query  700   GFTIAAALSKYDIARRMAMYVLSRAGSNPKVVLLTNMFVSMFLSMWISNVASPVLCYSII  759
                I A L +  +  R+A+ +L  AG  P+ +L+  M  +  LS ++SN  + ++   I+
Sbjct  48    MMIIGAILERTGLFDRLALKLLRLAGGKPRRLLVALMLATALLSAFLSNDGTVLIMIPIV  107

Query  760   QPLLR--NLPPDSNFAKALVLGIALAANVGGAASPIASPQNII---ALQNMYPSISWGTW  814
               L R   LPP       L++ +A AAN+GG A+PI  P NII   AL   +    +  +
Sbjct  108   LALARRLGLPP-----SPLLIALAFAANIGGTATPIGDPPNIIIASALGLSFGDFGFFMF  162

Query  815   FFISLPVCIIS----ILLIWLLLLATFKPGRDTTIVPIRPVKDQFSGVQYFVTIVTLSTI  870
               + + + ++     +L+   LL    +   +   +  R +KD        +  ++   +
Sbjct  163   PPVGVALLLVGLLPLLLIFRKLLPVRKEEEAELEELRKRAIKD------KLLLAISALVL  216

Query  871   GLWCVSHQLEHVFGDMGVIAIIPMVLFFGTGILNKED-FNNFLWTIIILAAGGLCLGKAV  929
              L  +       F  + V+A+   +L   TG+L+ E+      W+ ++  AG   L  A+
Sbjct  217   ALVILG------FLLLSVLALAGALLLLLTGVLDPEEALKAVDWSTLLFFAGLFILVGAL  270

Query  930   TSSGLLHTIAKAITARVDHFNLYGVLLVFSALILVMATFISHTVAALIMLPLVRQIGVGM  989
               +GL   +A A+        L   L +   L  +++ FIS+   A +M P++  +    
Sbjct  271   EKTGLADALADAL---GGLSGLLVALALILWLSALLSAFISNVPTAALMAPIIVGMAPAA  327

Query  990   DDPHPNLLVMASAL  1003
                 P+ L  A A+
Sbjct  328   GLGDPDPLAWALAV  341


>CDD:460807 pfam03105, SPX, SPX domain.  We have named this region the SPX 
domain after SYG1, Pho81 and XPR1. This 180 residue long domain 
is found at the amino terminus of a variety of proteins. 
In the yeast protein SYG1, the N-terminus directly binds 
to the G-protein beta subunit and inhibits transduction of the 
mating pheromone signal. Similarly, the N-terminus of the 
human XPR1 protein binds directly to the beta subunit of the 
G-protein heterotrimer leading to increased production of 
cAMP. These findings suggest that all the members of this family 
are involved in G-protein associated signal transduction. 
The N-termini of several proteins involved in the regulation 
of phosphate transport, including the putative phosphate 
level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 
from Neurospora crassa, are also members of this family. The 
SPX domain of S. cerevisiae low-affinity phosphate transporters 
Pho87 and Pho90 auto-regulates uptake and prevents efflux. 
This SPX dependent inhibition is mediated by the physical 
interaction with Spl2 NUC-2 contains several ankyrin repeats 
pfam00023. Several members of this family are annotated 
as XPR1 proteins: the xenotropic and polytropic retrovirus receptor 
confers susceptibility to infection with murine xenotropic 
and polytropic leukaemia viruses (MLV). Infection by 
these retroviruses can inhibit XPR1-mediated cAMP signalling 
and result in cell toxicity and death. The similarity between 
SYG1, phosphate regulators and XPR1 sequences has been previously 
noted, as has the additional similarity to several 
predicted proteins, of unknown function, from Drosophila melanogaster, 
Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces 
pombe, and Saccharomyces cerevisiae, and many 
other diverse organisms. In addition, given the similarities 
between XPR1 and SYG1 and phosphate regulatory proteins, 
it has been proposed that XPR1 might be involved in G-protein 
associated signal transduction and may itself function as 
a phosphate sensor.
Length=339

 Score = 112 bits (282),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 106/349 (30%), Gaps = 99/349 (28%)

Query  222  MKFSHSIQFNAVPDWSAYYIAYSNLKKLIY------------------------------  251
            MKF   ++ N VP+W   Y+ Y  LKKLI                               
Sbjct  1    MKFGKELEENLVPEWRDAYLDYKQLKKLIKKIQRELESTPPSSSPSSSDSGSAASPSDST  60

Query  252  --------------------SLEQQARKANGQAQSDVESAPLLSETPT------------  279
                                 L      ++  + SD  S+   S + +            
Sbjct  61   TSLPLRDPLSRSSSLDRAFGGLVPSPPSSSSSSSSDSSSSSNSSSSSSSSSPSLLRRLPS  120

Query  280  ---------------PEAVFRRALNAELEKICSFYEVKESEILKEVEDVVRDTEEYSSKT  324
                            E  F   L++EL K+  FY+ KE E L+ +E + +  E      
Sbjct  121  ESDDSSESYETTPLDSEDEFFERLDSELNKVNKFYKEKEEEFLERLEALNKQLEALR---  177

Query  325  DGADVDPMSDAMIKSRRMSSNSRPRTSGSYRDYAEEETEDDDDAADSDDEHHPPTGQGGV  384
                       +I+  +          G Y   +       +  + +  E          
Sbjct  178  ------DFRIKLIRESKSDLYRWREPFGLYSSDSSVFFSTSELDSGNSSESSVDDEVEEE  231

Query  385  PSSGRSRSDLSDSRFM-----ADSRILGFDRRGSGGHDEHCKDPGFLELYN-EGLS----  434
                   S +           A  ++   DR   G  D   +D  +L   N   L     
Sbjct  232  LERNGWISPIKSKDKKKRPSEALDKVKTPDRTLKGFLDASRRD--YLNRINKVNLRKAKK  289

Query  435  -LRQRAVNAYVSLCGLKSYIQLNKTGFSKALKKFDKILDCNLRREYMSS  482
             L++  +  Y  L  LKSY +LN+T F K LKKFDK+   N  ++YM  
Sbjct  290  KLKKAFIELYRGLELLKSYSELNRTAFRKILKKFDKVTSLNASKDYMKE  338


>CDD:279307 pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane 
region.  There are also some members in this family that 
do not match the Prosite motif, and belong to the subfamily 
SODIT1.
Length=472

 Score = 108 bits (272),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 97/478 (20%), Positives = 185/478 (39%), Gaps = 48/478 (10%)

Query  607   LIVILAVFII--LLYAPIMDKPEQQNCLAMLVFVSLLWATEVIPLFVTSLLIPFLVVMLR  664
             L+ +LAV +I  LL AP     +  +  A+ +   + W  E +P+ V +L    L  +L 
Sbjct  7     LLALLAVLLIILLLPAPDGLPSKAWHLFAIFIATIVGWILEPLPMAVIALFAISLSAILI  66

Query  665   IMKSADKPYHRLGPKDATGAAFSAMWTPVIMLLLGGFTIAAALSKYDIARRMAMYVLSRA  724
                 A               A S   +    L+ G F I+AA  K  + RR+A+ ++ + 
Sbjct  67    GTLLAKA----------LSWALSGFSSTTTWLVFGAFFISAAFEKTGLGRRIALVLVKKM  116

Query  725   GSNPKVVLLTNMFVSMFLSMWISNVASPVLCYSIIQPLLRNLPP--DSNFAKA-------  775
             G     +    +F    L +  +  ++      I+ P++ +LPP   S+  K        
Sbjct  117   GKRTLGLGYGLVFS--DLLLAPATPSNTARAGGIVFPIIMSLPPAFGSDPEKGSERRIGA  174

Query  776   -LVLGIALAANVGGAASPIASPQNIIALQNMYP----SISWGTWFFISLPVCIISILLIW  830
              L+  +  + ++  A    A   N++ L  M      +I+W +WF  ++P  +I +LL  
Sbjct  175   YLMWTVYQSTSITSAMFLTAMAPNLLLLGLMNSILGVTITWASWFLAAIPPGVILLLLAP  234

Query  831   LLLLATFKPGRDTTIVPIRPVKDQ------FSGVQYFVTIVTLSTIGLWCVSHQLEHVFG  884
             LLL   + P   +        K +       +  +  +  + +  + LW     L ++  
Sbjct  235   LLLYVLYPPEIKSVPDAKAIAKTELKELGPMTFREKALLGLFVLLLLLWIFGGSL-NI--  291

Query  885   DMGVIAIIPMVLFFGTGILNKEDF--NNFLWTIIILAAGGLCLGKAVTSSGLLHTIAKAI  942
             D   +AII + L     IL+ +D   N   W  +I   G + L   +  SG +  +   +
Sbjct  292   DATTVAIIGLALMLLLRILDWKDIVKNKGAWNTLIWLGGLIMLANGLERSGFIEWLGNTL  351

Query  943   TARVDHFN-LYGVLLVFSALILVMATFISHTVAALIMLPLVRQIGVGMDDPHPNLLVMAS  1001
             +  +  F+     +++ S   L    F S T     MLP+   +   +    P L  +  
Sbjct  352   STSLSGFSPAMAFIIILSLFYLSHYLFASATAHTAAMLPIFAAVAQAIPGAPPLLAALLL  411

Query  1002  ALMCSVA-MALPTSGFPNMTAIMTEVPQTGQRYLHVRHFFTRGIPASLMSWAVIVTIG  1058
                 S+     P    P            G  YL V+ ++  G   +++   +++ +G
Sbjct  412   GFAISLGGFLTPYGTGPGPIYF-------GSGYLKVKDWWRIGAILTIIGLLILLLLG  462



Lambda      K        H        a         alpha
   0.321    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1374815596


Query= TCONS_00000683

Length=736
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460985 pfam03600, CitMHS, Citrate transporter                     120     4e-30
CDD:279307 pfam00939, Na_sulph_symp, Sodium:sulfate symporter tra...  97.8    6e-22
CDD:460807 pfam03105, SPX, SPX domain. We have named this region ...  69.9    2e-13


>CDD:460985 pfam03600, CitMHS, Citrate transporter.  
Length=342

 Score = 120 bits (302),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 83/369 (22%), Positives = 155/369 (42%), Gaps = 34/369 (9%)

Query  309  LLWATEVIPLFVTSLLIPFLVVMLRIMKSADKPYHRLGPKDATGAAFSAMWTPVIMLLLG  368
            +L  TE +P  V +LL   L+V+L ++   +              A S + +P I+LLLG
Sbjct  2    VLIITEKLPRDVVALLGAVLLVLLGVLTPEE--------------ALSGIDSPTILLLLG  47

Query  369  GFTIAAALSKYDIARRMAMYVLSRAGSNPKVVLLTNMFVSMFLSMWISNVASPVLCYSII  428
               I A L +  +  R+A+ +L  AG  P+ +L+  M  +  LS ++SN  + ++   I+
Sbjct  48   MMIIGAILERTGLFDRLALKLLRLAGGKPRRLLVALMLATALLSAFLSNDGTVLIMIPIV  107

Query  429  QPLLR--NLPPDSNFAKALVLGIALAANVGGAASPIASPQNII---ALQNMYPSISWGTW  483
              L R   LPP       L++ +A AAN+GG A+PI  P NII   AL   +    +  +
Sbjct  108  LALARRLGLPP-----SPLLIALAFAANIGGTATPIGDPPNIIIASALGLSFGDFGFFMF  162

Query  484  FFISLPVCIISILLIWLLLLATFKPGRDTTIVPIRPVKDQFSGVQYFVTIVTLSTIGLWC  543
              + + + ++ +L + L+        ++         K         +  ++   + L  
Sbjct  163  PPVGVALLLVGLLPLLLIFRKLLPVRKEEEAELEELRKRAI--KDKLLLAISALVLALVI  220

Query  544  VSHQLEHVFGDMGVIAIIPMVLFFGTGILNKEDFNNFLWTIIILAAGGLCLGKAVTSSGL  603
            +            +     ++L     +  +E      W+ ++  AG   L  A+  +GL
Sbjct  221  LG-----FLLLSVLALAGALLLLLTGVLDPEEALKAVDWSTLLFFAGLFILVGALEKTGL  275

Query  604  LHTIAKAITARVDHFNLYGVLLVFSALILVMATFISHTVAALIMLPLVRQIGVGMDDPHP  663
               +A A+        L   L +   L  +++ FIS+   A +M P++  +        P
Sbjct  276  ADALADAL---GGLSGLLVALALILWLSALLSAFISNVPTAALMAPIIVGMAPAAGLGDP  332

Query  664  NLLVMASAL  672
            + L  A A+
Sbjct  333  DPLAWALAV  341


>CDD:279307 pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane 
region.  There are also some members in this family that 
do not match the Prosite motif, and belong to the subfamily 
SODIT1.
Length=472

 Score = 97.8 bits (244),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 97/478 (20%), Positives = 185/478 (39%), Gaps = 48/478 (10%)

Query  276  LIVILAVFII--LLYAPIMDKPEQQNCLAMLVFVSLLWATEVIPLFVTSLLIPFLVVMLR  333
            L+ +LAV +I  LL AP     +  +  A+ +   + W  E +P+ V +L    L  +L 
Sbjct  7    LLALLAVLLIILLLPAPDGLPSKAWHLFAIFIATIVGWILEPLPMAVIALFAISLSAILI  66

Query  334  IMKSADKPYHRLGPKDATGAAFSAMWTPVIMLLLGGFTIAAALSKYDIARRMAMYVLSRA  393
                A               A S   +    L+ G F I+AA  K  + RR+A+ ++ + 
Sbjct  67   GTLLAKA----------LSWALSGFSSTTTWLVFGAFFISAAFEKTGLGRRIALVLVKKM  116

Query  394  GSNPKVVLLTNMFVSMFLSMWISNVASPVLCYSIIQPLLRNLPP--DSNFAKA-------  444
            G     +    +F    L +  +  ++      I+ P++ +LPP   S+  K        
Sbjct  117  GKRTLGLGYGLVFS--DLLLAPATPSNTARAGGIVFPIIMSLPPAFGSDPEKGSERRIGA  174

Query  445  -LVLGIALAANVGGAASPIASPQNIIALQNMYP----SISWGTWFFISLPVCIISILLIW  499
             L+  +  + ++  A    A   N++ L  M      +I+W +WF  ++P  +I +LL  
Sbjct  175  YLMWTVYQSTSITSAMFLTAMAPNLLLLGLMNSILGVTITWASWFLAAIPPGVILLLLAP  234

Query  500  LLLLATFKPGRDTTIVPIRPVKDQ------FSGVQYFVTIVTLSTIGLWCVSHQLEHVFG  553
            LLL   + P   +        K +       +  +  +  + +  + LW     L ++  
Sbjct  235  LLLYVLYPPEIKSVPDAKAIAKTELKELGPMTFREKALLGLFVLLLLLWIFGGSL-NI--  291

Query  554  DMGVIAIIPMVLFFGTGILNKEDF--NNFLWTIIILAAGGLCLGKAVTSSGLLHTIAKAI  611
            D   +AII + L     IL+ +D   N   W  +I   G + L   +  SG +  +   +
Sbjct  292  DATTVAIIGLALMLLLRILDWKDIVKNKGAWNTLIWLGGLIMLANGLERSGFIEWLGNTL  351

Query  612  TARVDHFN-LYGVLLVFSALILVMATFISHTVAALIMLPLVRQIGVGMDDPHPNLLVMAS  670
            +  +  F+     +++ S   L    F S T     MLP+   +   +    P L  +  
Sbjct  352  STSLSGFSPAMAFIIILSLFYLSHYLFASATAHTAAMLPIFAAVAQAIPGAPPLLAALLL  411

Query  671  ALMCSVA-MALPTSGFPNMTAIMTEVPQTGQRYLHVRHFFTRGIPASLMSWAVIVTIG  727
                S+     P    P            G  YL V+ ++  G   +++   +++ +G
Sbjct  412  GFAISLGGFLTPYGTGPGPIYF-------GSGYLKVKDWWRIGAILTIIGLLILLLLG  462


>CDD:460807 pfam03105, SPX, SPX domain.  We have named this region the SPX 
domain after SYG1, Pho81 and XPR1. This 180 residue long domain 
is found at the amino terminus of a variety of proteins. 
In the yeast protein SYG1, the N-terminus directly binds 
to the G-protein beta subunit and inhibits transduction of the 
mating pheromone signal. Similarly, the N-terminus of the 
human XPR1 protein binds directly to the beta subunit of the 
G-protein heterotrimer leading to increased production of 
cAMP. These findings suggest that all the members of this family 
are involved in G-protein associated signal transduction. 
The N-termini of several proteins involved in the regulation 
of phosphate transport, including the putative phosphate 
level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 
from Neurospora crassa, are also members of this family. The 
SPX domain of S. cerevisiae low-affinity phosphate transporters 
Pho87 and Pho90 auto-regulates uptake and prevents efflux. 
This SPX dependent inhibition is mediated by the physical 
interaction with Spl2 NUC-2 contains several ankyrin repeats 
pfam00023. Several members of this family are annotated 
as XPR1 proteins: the xenotropic and polytropic retrovirus receptor 
confers susceptibility to infection with murine xenotropic 
and polytropic leukaemia viruses (MLV). Infection by 
these retroviruses can inhibit XPR1-mediated cAMP signalling 
and result in cell toxicity and death. The similarity between 
SYG1, phosphate regulators and XPR1 sequences has been previously 
noted, as has the additional similarity to several 
predicted proteins, of unknown function, from Drosophila melanogaster, 
Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces 
pombe, and Saccharomyces cerevisiae, and many 
other diverse organisms. In addition, given the similarities 
between XPR1 and SYG1 and phosphate regulatory proteins, 
it has been proposed that XPR1 might be involved in G-protein 
associated signal transduction and may itself function as 
a phosphate sensor.
Length=339

 Score = 69.9 bits (171),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 21/48 (44%), Positives = 29/48 (60%), Gaps = 0/48 (0%)

Query  104  LRQRAVNAYVSLCGLKSYIQLNKTGFSKALKKFDKILDCNLRREYMSS  151
            L++  +  Y  L  LKSY +LN+T F K LKKFDK+   N  ++YM  
Sbjct  291  LKKAFIELYRGLELLKSYSELNRTAFRKILKKFDKVTSLNASKDYMKE  338



Lambda      K        H        a         alpha
   0.324    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 934207584


Query= TCONS_00000686

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.126    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00000685

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00000684

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.127    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00006752

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.127    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00006754

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.127    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00006753

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.124    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00000687

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431396 pfam10615, DUF2470, Protein of unknown function (DUF24...  76.5    4e-19


>CDD:431396 pfam10615, DUF2470, Protein of unknown function (DUF2470).  This 
family is a putative haem-iron utilisation family, as many 
members are annotated as being pyridoxamine 5'-phosphate 
oxidase-related, FMN-binding; however this could not be confirmed.
Length=73

 Score = 76.5 bits (189),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query  10  KSFIIKHMNTSHADSLSLYLRAYCGVSAHFAHPAILQDISHSDLLITAKGTR-YSVPINP  68
            + II HMN  HAD+L LY R Y GV    A  A + DI    + +   G     +P +P
Sbjct  1   SARIIAHMNADHADALLLYARHYGGVPD--ATAARMTDIDRDGMDLRVTGDVTVRIPFDP  58

Query  69  PMTSLAETRARVVAM  83
           P+T   E RAR+V M
Sbjct  59  PLTDREEARARLVEM  73



Lambda      K        H        a         alpha
   0.325    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00006755

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.126    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00006756

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.124    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00000690

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.127    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00000689

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.124    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00000688

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.124    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00006757

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e            172     1e-56


>CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e.  
Length=133

 Score = 172 bits (438),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 55/104 (53%), Positives = 74/104 (71%), Gaps = 0/104 (0%)

Query  5    RDSRHKRSATGAKRATYRKKRAFEKGRQPANTRIGAKRIHLVRTRGGNRKFRALRLESGN  64
            R  RHKR  TG K   +RKKR +E GRQPANT++G +R+ +VR RGGNRK RALRL+  N
Sbjct  1    RQGRHKRKLTGGKAKLFRKKRKYELGRQPANTKLGEERVKVVRVRGGNRKVRALRLKKAN  60

Query  65   FSWGSEGISRKTRVIVVAYHPSNNELVRTNTLTKSAVVQIDAAP  108
             +  SEG+++K +++ V Y+PSN E VR N LTK A+++ D  P
Sbjct  61   VTHPSEGVTKKLKILGVVYNPSNPEYVRRNILTKGAIIETDVGP  104



Lambda      K        H        a         alpha
   0.317    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00000692

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e            198     2e-66


>CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e.  
Length=133

 Score = 198 bits (506),  Expect = 2e-66, Method: Composition-based stats.
 Identities = 68/183 (37%), Positives = 93/183 (51%), Gaps = 50/183 (27%)

Query  5    RDSRHKRSATGAKRATYRKKRAFEKGRQPANTRIGAKRIHLVRTRGGNRKFRALRLESGN  64
            R  RHKR  TG K   +RKKR +E GRQPANT++G +R+ +VR RGGNRK RALRL+  N
Sbjct  1    RQGRHKRKLTGGKAKLFRKKRKYELGRQPANTKLGEERVKVVRVRGGNRKVRALRLKKAN  60

Query  65   FSWGSEGISRKTRVIVVAYHPSNNELVRTNTLTKSAVVQIDAAPFRQWYEAHYGQPIGRR  124
             +  SEG+++K +++ V Y+PSN E VR N LTK A+++ D  P                
Sbjct  61   VTHPSEGVTKKLKILGVVYNPSNPEYVRRNILTKGAIIETDVGP----------------  104

Query  125  RQQKTAETTTEKKSNSVVKKQAARFADHGKVEPAIEKQFESGRLYAVIASRPGQSGRVDG  184
                                              +   F+ G+LYA + SRPGQ G V+ 
Sbjct  105  ----------------------------------LGLVFQGGKLYARVTSRPGQDGCVNA  130

Query  185  YIL  187
             +L
Sbjct  131  VLL  133



Lambda      K        H        a         alpha
   0.317    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00006758

Length=388


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00000694

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00006759

Length=222


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00000695

Length=1079
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401638 pfam09763, Sec3_C, Exocyst complex component Sec3. Thi...  396     6e-125
CDD:464608 pfam15277, Sec3-PIP2_bind, Exocyst complex component S...  104     3e-27 


>CDD:401638 pfam09763, Sec3_C, Exocyst complex component Sec3.  This entry 
is the conserved middle and C-terminus of the Sec3 protein. 
Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine 
transporter protein 1). Sec3 is the exocyst component 
that is closest to the plasma membrane docking site and it 
serves as a spatial landmark in the plasma membrane for incoming 
secretory vesicles. Sec3 is recruited to the sites of 
polarized membrane growth through its interaction with Rho1p, 
a small GTP-binding protein.
Length=696

 Score = 396 bits (1019),  Expect = 6e-125, Method: Composition-based stats.
 Identities = 166/458 (36%), Positives = 246/458 (54%), Gaps = 50/458 (11%)

Query  627   KKIEDLEADIRREIGRVEATSWLGNLEQQEGKVDQLARLIDKTIEECEELDGLLTLYSHE  686
                + LE  + RE+ ++E  + + +L + + +V++L + IDK ++EC+ELD  LTLYS E
Sbjct  1     DDADVLEERLSRELSKLEYAN-IKSLLESDKRVNELMKHIDKALKECDELDPTLTLYSME  59

Query  687   LNVSFSPGILSLPPSNRMAQTLHEDVSYIETQSQGLQVQTANQKLLHNELQNLLKTLSIS  746
             L+                  TL +D+ YIE+Q+ GLQVQ+ANQKLL+ EL++LL T+S+ 
Sbjct  60    LS------------------TLSDDIEYIESQNNGLQVQSANQKLLYKELESLLNTVSLP  101

Query  747   AVDLQPLRESSLSNPDGLRETEAALSTLYKAMLMIDPDIWQNKKRLGDAAGEQGSVGVYA  806
               DL  L E  LS+P+GL   EAAL  L+KA+  ID D                      
Sbjct  102   ESDLHALLEGPLSSPNGLEALEAALVALFKALNAIDGDK------------------KDL  143

Query  807   DTEIGQMRAIREKKEEYRAQSRMFLQRLRQFMAIAYKVAEQ---KRVDAAANGPKDPLKL  863
             D+++G MRA++E++  Y   + +FL+RL  F+   +K A +     +D+A        +L
Sbjct  144   DSDLGDMRALKERRARYEKVTSLFLKRLVDFLNNRFKNAFKSLGSDLDSA-----TSNEL  198

Query  864   DSEARAYFRQELWMYNALMLFAREVSGSEWHGLISLYEQQAKLPYQNEFRDNNLAWKRAG  923
                        L +Y+ LMLF +EV    +  L+ LY   A   Y+ EF+D     K+  
Sbjct  199   SLPNHLNVLNNLLIYSGLMLFLKEVDPETYEALLQLYNASASKIYEREFKDFFEYLKKQL  258

Query  924   RKPSG-EEQELLFTHQEKEKESEGIT-MAARKLTVRRGKTIRAAAGLRLTPGEKRHGRLE  981
             +K SG EE E LF+  + E  +E +    +RKLT+   KT    +     P  K  GRL 
Sbjct  259   KKSSGSEESESLFSSGQDELYTEWLALRKSRKLTLDSSKTGANLST--KAPQSKLSGRLR  316

Query  982   PCEVFAGTLQETLKMISEEQNFIVHFFHLSSLSNTEFSDFVASGNPDERPLPDFSARQPH  1041
             P E FAG L E   +I  EQNFI+ FFHLSSL+   F++FV    P ER  PD    +  
Sbjct  317   PDEAFAGALDELEPLILVEQNFIIDFFHLSSLTLD-FNEFVKQSPPSERRAPDLVPSKGV  375

Query  1042  DPDRGMARKVDQIMDELYSFWSTDMQNLVDWAIQPDPL  1079
             +PDR +AR V Q+M +++ F   ++QNLVD  ++ DPL
Sbjct  376   EPDRELARDVRQMMSKIFQFLEPELQNLVDKVLKNDPL  413


>CDD:464608 pfam15277, Sec3-PIP2_bind, Exocyst complex component SEC3 N-terminal 
PIP2 binding PH.  This is the N-terminal domain of fungal 
and eukaryotic Sec3 proteins. Sec3 is a component of the 
exocyst complex that is involved in the docking of exocytic 
vesicles with fusion sites on the plasma membrane.This N-terminal 
domain contains a cryptic pleckstrin homology (PH) 
fold, and all six positively charged lysine and arginine residues 
in the PH domain predicted to bind the PIP2 head group 
are conserved. The exocyst complex is essential for many exocytic 
events, by tethering vesicles at the plasma membrane 
for fusion. In fission yeast, polarized exocytosis for growth 
relies on the combined action of the exocyst at cell poles 
and myosin-driven transport along actin cables.
Length=85

 Score = 104 bits (262),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 36/82 (44%), Positives = 47/82 (57%), Gaps = 16/82 (20%)

Query  1   MHKARENNDGTFSIGKTWMLDDLSSIQSYTGFVPSTPLEQQHKQWAATVGFVVTVGKPYY  60
           +HK +EN++G+FSIGKTW L +L  ++                      GF +T  KPYY
Sbjct  20  LHKVKENSNGSFSIGKTWPLKELRLVEGIN----------------PDKGFDLTFDKPYY  63

Query  61  WHARSSKEKDFFIGSLVKIYRK  82
           W A S KEK+ FI SLVK+YRK
Sbjct  64  WQANSPKEKNAFIRSLVKLYRK  85



Lambda      K        H        a         alpha
   0.311    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1391806108


Query= TCONS_00006760

Length=1079
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401638 pfam09763, Sec3_C, Exocyst complex component Sec3. Thi...  396     6e-125
CDD:464608 pfam15277, Sec3-PIP2_bind, Exocyst complex component S...  104     3e-27 


>CDD:401638 pfam09763, Sec3_C, Exocyst complex component Sec3.  This entry 
is the conserved middle and C-terminus of the Sec3 protein. 
Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine 
transporter protein 1). Sec3 is the exocyst component 
that is closest to the plasma membrane docking site and it 
serves as a spatial landmark in the plasma membrane for incoming 
secretory vesicles. Sec3 is recruited to the sites of 
polarized membrane growth through its interaction with Rho1p, 
a small GTP-binding protein.
Length=696

 Score = 396 bits (1019),  Expect = 6e-125, Method: Composition-based stats.
 Identities = 166/458 (36%), Positives = 246/458 (54%), Gaps = 50/458 (11%)

Query  627   KKIEDLEADIRREIGRVEATSWLGNLEQQEGKVDQLARLIDKTIEECEELDGLLTLYSHE  686
                + LE  + RE+ ++E  + + +L + + +V++L + IDK ++EC+ELD  LTLYS E
Sbjct  1     DDADVLEERLSRELSKLEYAN-IKSLLESDKRVNELMKHIDKALKECDELDPTLTLYSME  59

Query  687   LNVSFSPGILSLPPSNRMAQTLHEDVSYIETQSQGLQVQTANQKLLHNELQNLLKTLSIS  746
             L+                  TL +D+ YIE+Q+ GLQVQ+ANQKLL+ EL++LL T+S+ 
Sbjct  60    LS------------------TLSDDIEYIESQNNGLQVQSANQKLLYKELESLLNTVSLP  101

Query  747   AVDLQPLRESSLSNPDGLRETEAALSTLYKAMLMIDPDIWQNKKRLGDAAGEQGSVGVYA  806
               DL  L E  LS+P+GL   EAAL  L+KA+  ID D                      
Sbjct  102   ESDLHALLEGPLSSPNGLEALEAALVALFKALNAIDGDK------------------KDL  143

Query  807   DTEIGQMRAIREKKEEYRAQSRMFLQRLRQFMAIAYKVAEQ---KRVDAAANGPKDPLKL  863
             D+++G MRA++E++  Y   + +FL+RL  F+   +K A +     +D+A        +L
Sbjct  144   DSDLGDMRALKERRARYEKVTSLFLKRLVDFLNNRFKNAFKSLGSDLDSA-----TSNEL  198

Query  864   DSEARAYFRQELWMYNALMLFAREVSGSEWHGLISLYEQQAKLPYQNEFRDNNLAWKRAG  923
                        L +Y+ LMLF +EV    +  L+ LY   A   Y+ EF+D     K+  
Sbjct  199   SLPNHLNVLNNLLIYSGLMLFLKEVDPETYEALLQLYNASASKIYEREFKDFFEYLKKQL  258

Query  924   RKPSG-EEQELLFTHQEKEKESEGIT-MAARKLTVRRGKTIRAAAGLRLTPGEKRHGRLE  981
             +K SG EE E LF+  + E  +E +    +RKLT+   KT    +     P  K  GRL 
Sbjct  259   KKSSGSEESESLFSSGQDELYTEWLALRKSRKLTLDSSKTGANLST--KAPQSKLSGRLR  316

Query  982   PCEVFAGTLQETLKMISEEQNFIVHFFHLSSLSNTEFSDFVASGNPDERPLPDFSARQPH  1041
             P E FAG L E   +I  EQNFI+ FFHLSSL+   F++FV    P ER  PD    +  
Sbjct  317   PDEAFAGALDELEPLILVEQNFIIDFFHLSSLTLD-FNEFVKQSPPSERRAPDLVPSKGV  375

Query  1042  DPDRGMARKVDQIMDELYSFWSTDMQNLVDWAIQPDPL  1079
             +PDR +AR V Q+M +++ F   ++QNLVD  ++ DPL
Sbjct  376   EPDRELARDVRQMMSKIFQFLEPELQNLVDKVLKNDPL  413


>CDD:464608 pfam15277, Sec3-PIP2_bind, Exocyst complex component SEC3 N-terminal 
PIP2 binding PH.  This is the N-terminal domain of fungal 
and eukaryotic Sec3 proteins. Sec3 is a component of the 
exocyst complex that is involved in the docking of exocytic 
vesicles with fusion sites on the plasma membrane.This N-terminal 
domain contains a cryptic pleckstrin homology (PH) 
fold, and all six positively charged lysine and arginine residues 
in the PH domain predicted to bind the PIP2 head group 
are conserved. The exocyst complex is essential for many exocytic 
events, by tethering vesicles at the plasma membrane 
for fusion. In fission yeast, polarized exocytosis for growth 
relies on the combined action of the exocyst at cell poles 
and myosin-driven transport along actin cables.
Length=85

 Score = 104 bits (262),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 36/82 (44%), Positives = 47/82 (57%), Gaps = 16/82 (20%)

Query  1   MHKARENNDGTFSIGKTWMLDDLSSIQSYTGFVPSTPLEQQHKQWAATVGFVVTVGKPYY  60
           +HK +EN++G+FSIGKTW L +L  ++                      GF +T  KPYY
Sbjct  20  LHKVKENSNGSFSIGKTWPLKELRLVEGIN----------------PDKGFDLTFDKPYY  63

Query  61  WHARSSKEKDFFIGSLVKIYRK  82
           W A S KEK+ FI SLVK+YRK
Sbjct  64  WQANSPKEKNAFIRSLVKLYRK  85



Lambda      K        H        a         alpha
   0.311    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0655    0.140     1.90     42.6     43.6 

Effective search space used: 1391806108


Query= TCONS_00000696

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401638 pfam09763, Sec3_C, Exocyst complex component Sec3. Thi...  322     5e-105


>CDD:401638 pfam09763, Sec3_C, Exocyst complex component Sec3.  This entry 
is the conserved middle and C-terminus of the Sec3 protein. 
Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine 
transporter protein 1). Sec3 is the exocyst component 
that is closest to the plasma membrane docking site and it 
serves as a spatial landmark in the plasma membrane for incoming 
secretory vesicles. Sec3 is recruited to the sites of 
polarized membrane growth through its interaction with Rho1p, 
a small GTP-binding protein.
Length=696

 Score = 322 bits (827),  Expect = 5e-105, Method: Composition-based stats.
 Identities = 143/379 (38%), Positives = 205/379 (54%), Gaps = 31/379 (8%)

Query  3    QTLHEDVSYIETQSQGLQVQTANQKLLHNELQNLLKTLSISAVDLQPLRESSLSNPDGLR  62
             TL +D+ YIE+Q+ GLQVQ+ANQKLL+ EL++LL T+S+   DL  L E  LS+P+GL 
Sbjct  61   STLSDDIEYIESQNNGLQVQSANQKLLYKELESLLNTVSLPESDLHALLEGPLSSPNGLE  120

Query  63   ETEAALSTLYKAMLMIDPDIWQNKKRLGDAAGEQGSVGVYADTEIGQMRAIREKKEEYRA  122
              EAAL  L+KA+  ID D                      D+++G MRA++E++  Y  
Sbjct  121  ALEAALVALFKALNAIDGDK------------------KDLDSDLGDMRALKERRARYEK  162

Query  123  QSRMFLQRLRQFMAIAYKVAEQ---KRVDAAANGPKDPLKLDSEARAYFRQELWMYNALM  179
             + +FL+RL  F+   +K A +     +D+A        +L           L +Y+ LM
Sbjct  163  VTSLFLKRLVDFLNNRFKNAFKSLGSDLDSA-----TSNELSLPNHLNVLNNLLIYSGLM  217

Query  180  LFAREVSGSEWHGLISLYEQQAKLPYQNEFRDNNLAWKRAGRKPSG-EEQELLFTHQEKE  238
            LF +EV    +  L+ LY   A   Y+ EF+D     K+  +K SG EE E LF+  + E
Sbjct  218  LFLKEVDPETYEALLQLYNASASKIYEREFKDFFEYLKKQLKKSSGSEESESLFSSGQDE  277

Query  239  KESEGIT-MAARKLTVRRGKTIRAAAGLRLTPGEKRHGRLEPCEVFAGTLQETLKMISEE  297
              +E +    +RKLT+   KT    +     P  K  GRL P E FAG L E   +I  E
Sbjct  278  LYTEWLALRKSRKLTLDSSKTGANLST--KAPQSKLSGRLRPDEAFAGALDELEPLILVE  335

Query  298  QNFIVHFFHLSSLSNTEFSDFVASGNPDERPLPDFSARQPHDPDRGMARKVDQIMDELYS  357
            QNFI+ FFHLSSL+   F++FV    P ER  PD    +  +PDR +AR V Q+M +++ 
Sbjct  336  QNFIIDFFHLSSLTLD-FNEFVKQSPPSERRAPDLVPSKGVEPDRELARDVRQMMSKIFQ  394

Query  358  FWSTDMQNLVDWAIQPDPL  376
            F   ++QNLVD  ++ DPL
Sbjct  395  FLEPELQNLVDKVLKNDPL  413



Lambda      K        H        a         alpha
   0.316    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453018240


Query= TCONS_00000697

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  156     1e-42


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 156 bits (396),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 101/472 (21%), Positives = 183/472 (39%), Gaps = 51/472 (11%)

Query  49   ILWKRFRSQNNSTIHAAHERLGPIVRLGPSEISINCVEG--GIKTVY--SGGFEKHEWYP  104
            +L    +   +S      ++ GPI RL      +  + G   +K V    G         
Sbjct  13   LLQLGRKGNLHSVFTKLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDE  72

Query  105  RVFGSFGTVS----MFTMTGSKDHSVRKRMLSNIYSKSFLQSSPHMRLISR-TIVYDRLL  159
              F +         +    G +   +R+ +           S   +    R       L+
Sbjct  73   PWFATSRGPFLGKGIVFANGPRWRQLRRFLTPT------FTSFGKLSFEPRVEEEARDLV  126

Query  160  PILYDAATSSRPVDVHDLNQGLTMDFVSAYLYGVTNGTNFLQDAPYRQRMLHLYQSRKPF  219
              L   A     +D+ DL     ++ + + L+G   G+          + +    S    
Sbjct  127  EKLRKTAGEPGVIDITDLLFRAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSS  186

Query  220  EFYHQEVPNLLSWTKSLGIRLIPRYCDQANEILDSWGLGLCDKAEESLKSNRLEDEPAVY  279
                 ++ +L    K        +   +A + +        D  ++ ++  R   + A  
Sbjct  187  PSP--QLLDLFPILKYFPGPHGRKL-KRARKKIK-------DLLDKLIEERRETLDSAKK  236

Query  280  KH---LKQMILKHLPENKNDVEYARILEQQRLDIACEMYDHLTAGHETSAVALTYLLWEL  336
                 L  ++L    E+ + +           ++   + +   AG +T++  L++ L+EL
Sbjct  237  SPRDFLDALLLAKEEEDGSKLTDE--------ELRATVLELFFAGTDTTSSTLSWALYEL  288

Query  337  SKRPELQDALRAELSTLEPMVIFPRPSESAELPPAKSIDSLPLLEAIVTETLRLHAPIPG  396
            +K PE+Q+ LR E+  +               P    + ++P L+A++ ETLRLH  +P 
Sbjct  289  AKHPEVQEKLREEIDEVIG---------DKRSPTYDDLQNMPYLDAVIKETLRLHPVVPL  339

Query  397  IQPRVTPYPSCTLAGYNNIPPKTRVNAQAYSLHRNPEVFPDPETWEPKRWLKDVNTPSEL  456
            + PR        + GY  IP  T V    Y+LHR+PEVFP+PE ++P+R+L + N     
Sbjct  340  LLPREVTKD-TVIPGYL-IPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDE-NGKFRK  396

Query  457  EERRRWFWAFGSGGRMCVGSNLALQEMKLVVAAVYTNFKTSIVSDDNMEAID  508
                  F  FG+G R C+G  LA  EMKL +A +  NF+  +    +   ID
Sbjct  397  SFA---FLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPGTDPPDID  445



Lambda      K        H        a         alpha
   0.320    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00006763

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  148     1e-40


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 148 bits (377),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 66/200 (33%), Positives = 105/200 (53%), Gaps = 15/200 (8%)

Query  210  DIACEMYDHLTAGHETSAVALTYLLWELSKRPELQDALRAELSTLEPMVIFPRPSESAEL  269
            ++   + +   AG +T++  L++ L+EL+K PE+Q+ LR E+  +               
Sbjct  261  ELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIG---------DKRS  311

Query  270  PPAKSIDSLPLLEAIVTETLRLHAPIPGIQPRVTPYPSCTLAGYNNIPPKTRVNAQAYSL  329
            P    + ++P L+A++ ETLRLH  +P + PR        + GY  IP  T V    Y+L
Sbjct  312  PTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKD-TVIPGYL-IPKGTLVIVNLYAL  369

Query  330  HRNPEVFPDPETWEPKRWLKDVNTPSELEERRRWFWAFGSGGRMCVGSNLALQEMKLVVA  389
            HR+PEVFP+PE ++P+R+L + N           F  FG+G R C+G  LA  EMKL +A
Sbjct  370  HRDPEVFPNPEEFDPERFLDE-NGKFRKSFA---FLPFGAGPRNCLGERLARMEMKLFLA  425

Query  390  AVYTNFKTSIVSDDNMEAID  409
             +  NF+  +    +   ID
Sbjct  426  TLLQNFEVELPPGTDPPDID  445



Lambda      K        H        a         alpha
   0.319    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00000698

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  156     1e-42


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 156 bits (396),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 101/472 (21%), Positives = 183/472 (39%), Gaps = 51/472 (11%)

Query  49   ILWKRFRSQNNSTIHAAHERLGPIVRLGPSEISINCVEG--GIKTVY--SGGFEKHEWYP  104
            +L    +   +S      ++ GPI RL      +  + G   +K V    G         
Sbjct  13   LLQLGRKGNLHSVFTKLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDE  72

Query  105  RVFGSFGTVS----MFTMTGSKDHSVRKRMLSNIYSKSFLQSSPHMRLISR-TIVYDRLL  159
              F +         +    G +   +R+ +           S   +    R       L+
Sbjct  73   PWFATSRGPFLGKGIVFANGPRWRQLRRFLTPT------FTSFGKLSFEPRVEEEARDLV  126

Query  160  PILYDAATSSRPVDVHDLNQGLTMDFVSAYLYGVTNGTNFLQDAPYRQRMLHLYQSRKPF  219
              L   A     +D+ DL     ++ + + L+G   G+          + +    S    
Sbjct  127  EKLRKTAGEPGVIDITDLLFRAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSS  186

Query  220  EFYHQEVPNLLSWTKSLGIRLIPRYCDQANEILDSWGLGLCDKAEESLKSNRLEDEPAVY  279
                 ++ +L    K        +   +A + +        D  ++ ++  R   + A  
Sbjct  187  PSP--QLLDLFPILKYFPGPHGRKL-KRARKKIK-------DLLDKLIEERRETLDSAKK  236

Query  280  KH---LKQMILKHLPENKNDVEYARILEQQRLDIACEMYDHLTAGHETSAVALTYLLWEL  336
                 L  ++L    E+ + +           ++   + +   AG +T++  L++ L+EL
Sbjct  237  SPRDFLDALLLAKEEEDGSKLTDE--------ELRATVLELFFAGTDTTSSTLSWALYEL  288

Query  337  SKRPELQDALRAELSTLEPMVIFPRPSESAELPPAKSIDSLPLLEAIVTETLRLHAPIPG  396
            +K PE+Q+ LR E+  +               P    + ++P L+A++ ETLRLH  +P 
Sbjct  289  AKHPEVQEKLREEIDEVIG---------DKRSPTYDDLQNMPYLDAVIKETLRLHPVVPL  339

Query  397  IQPRVTPYPSCTLAGYNNIPPKTRVNAQAYSLHRNPEVFPDPETWEPKRWLKDVNTPSEL  456
            + PR        + GY  IP  T V    Y+LHR+PEVFP+PE ++P+R+L + N     
Sbjct  340  LLPREVTKD-TVIPGYL-IPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDE-NGKFRK  396

Query  457  EERRRWFWAFGSGGRMCVGSNLALQEMKLVVAAVYTNFKTSIVSDDNMEAID  508
                  F  FG+G R C+G  LA  EMKL +A +  NF+  +    +   ID
Sbjct  397  SFA---FLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPGTDPPDID  445



Lambda      K        H        a         alpha
   0.320    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00006765

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  156     1e-42


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 156 bits (396),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 101/472 (21%), Positives = 183/472 (39%), Gaps = 51/472 (11%)

Query  49   ILWKRFRSQNNSTIHAAHERLGPIVRLGPSEISINCVEG--GIKTVY--SGGFEKHEWYP  104
            +L    +   +S      ++ GPI RL      +  + G   +K V    G         
Sbjct  13   LLQLGRKGNLHSVFTKLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDE  72

Query  105  RVFGSFGTVS----MFTMTGSKDHSVRKRMLSNIYSKSFLQSSPHMRLISR-TIVYDRLL  159
              F +         +    G +   +R+ +           S   +    R       L+
Sbjct  73   PWFATSRGPFLGKGIVFANGPRWRQLRRFLTPT------FTSFGKLSFEPRVEEEARDLV  126

Query  160  PILYDAATSSRPVDVHDLNQGLTMDFVSAYLYGVTNGTNFLQDAPYRQRMLHLYQSRKPF  219
              L   A     +D+ DL     ++ + + L+G   G+          + +    S    
Sbjct  127  EKLRKTAGEPGVIDITDLLFRAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSS  186

Query  220  EFYHQEVPNLLSWTKSLGIRLIPRYCDQANEILDSWGLGLCDKAEESLKSNRLEDEPAVY  279
                 ++ +L    K        +   +A + +        D  ++ ++  R   + A  
Sbjct  187  PSP--QLLDLFPILKYFPGPHGRKL-KRARKKIK-------DLLDKLIEERRETLDSAKK  236

Query  280  KH---LKQMILKHLPENKNDVEYARILEQQRLDIACEMYDHLTAGHETSAVALTYLLWEL  336
                 L  ++L    E+ + +           ++   + +   AG +T++  L++ L+EL
Sbjct  237  SPRDFLDALLLAKEEEDGSKLTDE--------ELRATVLELFFAGTDTTSSTLSWALYEL  288

Query  337  SKRPELQDALRAELSTLEPMVIFPRPSESAELPPAKSIDSLPLLEAIVTETLRLHAPIPG  396
            +K PE+Q+ LR E+  +               P    + ++P L+A++ ETLRLH  +P 
Sbjct  289  AKHPEVQEKLREEIDEVIG---------DKRSPTYDDLQNMPYLDAVIKETLRLHPVVPL  339

Query  397  IQPRVTPYPSCTLAGYNNIPPKTRVNAQAYSLHRNPEVFPDPETWEPKRWLKDVNTPSEL  456
            + PR        + GY  IP  T V    Y+LHR+PEVFP+PE ++P+R+L + N     
Sbjct  340  LLPREVTKD-TVIPGYL-IPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDE-NGKFRK  396

Query  457  EERRRWFWAFGSGGRMCVGSNLALQEMKLVVAAVYTNFKTSIVSDDNMEAID  508
                  F  FG+G R C+G  LA  EMKL +A +  NF+  +    +   ID
Sbjct  397  SFA---FLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPGTDPPDID  445



Lambda      K        H        a         alpha
   0.320    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00006766

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462766 pfam09350, DUF1992, Domain of unknown function (DUF199...  93.0    3e-24


>CDD:462766 pfam09350, DUF1992, Domain of unknown function (DUF1992).  This 
family of proteins are functionally uncharacterized.
Length=72

 Score = 93.0 bits (232),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (3%)

Query  126  LANERIEDAIARGQFNNIK-RGKGVNVQSDHNANSAFIDTTEYFMNKIIQKQEIVPPWIE  184
            LA  RI +AI RG+F+N+  RGK +    D + ++ F+       N+I++   ++PPWIE
Sbjct  1    LAERRIREAIERGEFDNLPGRGKPLP-LDDDSEHNPFVPEELRMANRILKNAGVLPPWIE  59

Query  185  KQQELTREVDRFR  197
             ++E+ R ++  R
Sbjct  60   LRKEIERLIELLR  72



Lambda      K        H        a         alpha
   0.312    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00000700

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462766 pfam09350, DUF1992, Domain of unknown function (DUF199...  92.6    3e-24


>CDD:462766 pfam09350, DUF1992, Domain of unknown function (DUF1992).  This 
family of proteins are functionally uncharacterized.
Length=72

 Score = 92.6 bits (231),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (3%)

Query  88   LANERIEDAIARGQFNNIK-RGKGVNVQSDHNANSAFIDTTEYFMNKIIQKQEIVPPWIE  146
            LA  RI +AI RG+F+N+  RGK +    D + ++ F+       N+I++   ++PPWIE
Sbjct  1    LAERRIREAIERGEFDNLPGRGKPLP-LDDDSEHNPFVPEELRMANRILKNAGVLPPWIE  59

Query  147  KQQELTREVDRFR  159
             ++E+ R ++  R
Sbjct  60   LRKEIERLIELLR  72



Lambda      K        H        a         alpha
   0.312    0.126    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00000701

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462766 pfam09350, DUF1992, Domain of unknown function (DUF199...  93.8    4e-24


>CDD:462766 pfam09350, DUF1992, Domain of unknown function (DUF1992).  This 
family of proteins are functionally uncharacterized.
Length=72

 Score = 93.8 bits (234),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (3%)

Query  230  LANERIEDAIARGQFNNIK-RGKGVNVQSDHNANSAFIDTTEYFMNKIIQKQEIVPPWIE  288
            LA  RI +AI RG+F+N+  RGK +    D + ++ F+       N+I++   ++PPWIE
Sbjct  1    LAERRIREAIERGEFDNLPGRGKPLP-LDDDSEHNPFVPEELRMANRILKNAGVLPPWIE  59

Query  289  KQQELTREVDRFR  301
             ++E+ R ++  R
Sbjct  60   LRKEIERLIELLR  72



Lambda      K        H        a         alpha
   0.311    0.123    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00000702

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462766 pfam09350, DUF1992, Domain of unknown function (DUF199...  93.8    4e-24


>CDD:462766 pfam09350, DUF1992, Domain of unknown function (DUF1992).  This 
family of proteins are functionally uncharacterized.
Length=72

 Score = 93.8 bits (234),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (3%)

Query  233  LANERIEDAIARGQFNNIK-RGKGVNVQSDHNANSAFIDTTEYFMNKIIQKQEIVPPWIE  291
            LA  RI +AI RG+F+N+  RGK +    D + ++ F+       N+I++   ++PPWIE
Sbjct  1    LAERRIREAIERGEFDNLPGRGKPLP-LDDDSEHNPFVPEELRMANRILKNAGVLPPWIE  59

Query  292  KQQELTREVDRFR  304
             ++E+ R ++  R
Sbjct  60   LRKEIERLIELLR  72



Lambda      K        H        a         alpha
   0.311    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00000703

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462766 pfam09350, DUF1992, Domain of unknown function (DUF199...  93.8    4e-24


>CDD:462766 pfam09350, DUF1992, Domain of unknown function (DUF1992).  This 
family of proteins are functionally uncharacterized.
Length=72

 Score = 93.8 bits (234),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (3%)

Query  244  LANERIEDAIARGQFNNIK-RGKGVNVQSDHNANSAFIDTTEYFMNKIIQKQEIVPPWIE  302
            LA  RI +AI RG+F+N+  RGK +    D + ++ F+       N+I++   ++PPWIE
Sbjct  1    LAERRIREAIERGEFDNLPGRGKPLP-LDDDSEHNPFVPEELRMANRILKNAGVLPPWIE  59

Query  303  KQQELTREVDRFR  315
             ++E+ R ++  R
Sbjct  60   LRKEIERLIELLR  72



Lambda      K        H        a         alpha
   0.312    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 648020248


Query= TCONS_00000704

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433280 pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) do...  212     2e-67


>CDD:433280 pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=145

 Score = 212 bits (542),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 75/147 (51%), Positives = 93/147 (63%), Gaps = 2/147 (1%)

Query  356  TTPSDLDLLHKWMNDPRVSAAWGEGGPKEKQEKFLRNNLTSRHSFPVIGCWDGKPFGYFE  415
               +DL+LLH+WMNDPRV+  W   GP E+  ++L       HS P IG  DG+PFGYFE
Sbjct  1    DPEADLELLHRWMNDPRVAFWWMLAGPLEQVREYLARLAADPHSHPYIGLLDGEPFGYFE  60

Query  416  IYWVKEDRLGALIGGADNYDRGIHLLVGEQEYRGSHRVAIWLSALVHYCWLADPRTQTVM  475
            IYW KEDRLG     A   DRGIHLL+GE  +RG       L ALVHY + ADPRT+ V+
Sbjct  61   IYWAKEDRLGEY-YDARPGDRGIHLLIGEPAFRGRGFTTALLRALVHYLF-ADPRTRRVV  118

Query  476  LEPRVDNEKIIQYLQNAGFYKEGEVTF  502
            +EP V NE+ I+ L+ AGF K  E+  
Sbjct  119  VEPDVRNERAIRLLERAGFRKVKEIDL  145



Lambda      K        H        a         alpha
   0.317    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 652562446


Query= TCONS_00000705

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426766 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/m...  65.6    3e-12


>CDD:426766 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin 
family.  This family contains the bacterial Ornithine 
cyclodeaminase enzyme EC:4.3.1.12, which catalyzes the deamination 
of ornithine to proline. This family also contains mu-Crystallin 
the major component of the eye lens in several Australian 
marsupials, mRNA for this protein has also been found 
in human retina.
Length=313

 Score = 65.6 bits (160),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 99/276 (36%), Gaps = 65/276 (24%)

Query  182  QGTVTLLDADS-MPFGLINAHELTPFRTALATMMI---FNKRKRVRTVVVFGAGKQAYWH  237
              T  L D  +  P  L++A  LT  RTA A   +   +   K    + + G G QA + 
Sbjct  85   TATGVLNDPSTGYPLALMDATLLTALRTA-AVSAVAAKYLAPKDASVLAIIGNGVQAEFQ  143

Query  238  IRLALTLRAADIKRVVIVNRSFERAAMLLKDIYSTENSSWRGDVKFSAVSTDFGEYDRII  297
               A       I  V I +R         ++             +  A ++         
Sbjct  144  A-EAFR-AVFGIDEVRIYDRDPRATEKFARNAQ-------EPGFEVRACTS--------P  186

Query  298  QDAIHKSDAIFCCTPSIE--PLFPAELLTSREGRQKGRFISAIGSYRPHMAELHPDILRD  355
            ++A+  +D I   T      P+   E +      + G  I+A+G+ RP   EL  DIL  
Sbjct  187  EEAVEGADIIITVTADKANAPILKDEWV------KPGAHINAVGADRPGKTELDDDIL--  238

Query  356  EVNAHHSGRHFHKHIKRSGVVVVDSLEAALKEAGELIQAGIKPNQVVELGELLMVRDASR  415
                           KR+  + V+    A +E GE+ Q  +  + V ELGE++  +   R
Sbjct  239  ---------------KRA-DIFVEYEAQA-REEGEIQQLLVD-DPVAELGEVITGKKPGR  280

Query  416  KDNNQDVEDTKSLREWVERGNVIYKSVGMGLMDLVT  451
              + +                 ++ SVGM + D+  
Sbjct  281  TSDEE---------------ITLFDSVGMAIEDVAA  301



Lambda      K        H        a         alpha
   0.316    0.129    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00006767

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426766 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/m...  65.6    3e-12


>CDD:426766 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin 
family.  This family contains the bacterial Ornithine 
cyclodeaminase enzyme EC:4.3.1.12, which catalyzes the deamination 
of ornithine to proline. This family also contains mu-Crystallin 
the major component of the eye lens in several Australian 
marsupials, mRNA for this protein has also been found 
in human retina.
Length=313

 Score = 65.6 bits (160),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 99/276 (36%), Gaps = 65/276 (24%)

Query  182  QGTVTLLDADS-MPFGLINAHELTPFRTALATMMI---FNKRKRVRTVVVFGAGKQAYWH  237
              T  L D  +  P  L++A  LT  RTA A   +   +   K    + + G G QA + 
Sbjct  85   TATGVLNDPSTGYPLALMDATLLTALRTA-AVSAVAAKYLAPKDASVLAIIGNGVQAEFQ  143

Query  238  IRLALTLRAADIKRVVIVNRSFERAAMLLKDIYSTENSSWRGDVKFSAVSTDFGEYDRII  297
               A       I  V I +R         ++             +  A ++         
Sbjct  144  A-EAFR-AVFGIDEVRIYDRDPRATEKFARNAQ-------EPGFEVRACTS--------P  186

Query  298  QDAIHKSDAIFCCTPSIE--PLFPAELLTSREGRQKGRFISAIGSYRPHMAELHPDILRD  355
            ++A+  +D I   T      P+   E +      + G  I+A+G+ RP   EL  DIL  
Sbjct  187  EEAVEGADIIITVTADKANAPILKDEWV------KPGAHINAVGADRPGKTELDDDIL--  238

Query  356  EVNAHHSGRHFHKHIKRSGVVVVDSLEAALKEAGELIQAGIKPNQVVELGELLMVRDASR  415
                           KR+  + V+    A +E GE+ Q  +  + V ELGE++  +   R
Sbjct  239  ---------------KRA-DIFVEYEAQA-REEGEIQQLLVD-DPVAELGEVITGKKPGR  280

Query  416  KDNNQDVEDTKSLREWVERGNVIYKSVGMGLMDLVT  451
              + +                 ++ SVGM + D+  
Sbjct  281  TSDEE---------------ITLFDSVGMAIEDVAA  301



Lambda      K        H        a         alpha
   0.316    0.129    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00000708

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426766 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/m...  67.1    9e-13


>CDD:426766 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin 
family.  This family contains the bacterial Ornithine 
cyclodeaminase enzyme EC:4.3.1.12, which catalyzes the deamination 
of ornithine to proline. This family also contains mu-Crystallin 
the major component of the eye lens in several Australian 
marsupials, mRNA for this protein has also been found 
in human retina.
Length=313

 Score = 67.1 bits (164),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 99/276 (36%), Gaps = 65/276 (24%)

Query  216  QGTVTLLDADS-MPFGLINAHELTPFRTALATMMI---FNKRKRVRTVVVFGAGKQAYWH  271
              T  L D  +  P  L++A  LT  RTA A   +   +   K    + + G G QA + 
Sbjct  85   TATGVLNDPSTGYPLALMDATLLTALRTA-AVSAVAAKYLAPKDASVLAIIGNGVQAEFQ  143

Query  272  IRLALTLRAADIKRVVIVNRSFERAAMLLKDIYSTENSSWRGDVKFSAVSTDFGEYDRII  331
               A       I  V I +R         ++             +  A ++         
Sbjct  144  A-EAFR-AVFGIDEVRIYDRDPRATEKFARNAQ-------EPGFEVRACTS--------P  186

Query  332  QDAIHKSDAIFCCTPSIE--PLFPAELLTSREGRQKGRFISAIGSYRPHMAELHPDILRD  389
            ++A+  +D I   T      P+   E +      + G  I+A+G+ RP   EL  DIL  
Sbjct  187  EEAVEGADIIITVTADKANAPILKDEWV------KPGAHINAVGADRPGKTELDDDIL--  238

Query  390  EVNAHHSGRHFHKHIKRSGVVVVDSLEAALKEAGELIQAGIKPNQVVELGELLMVRDASR  449
                           KR+  + V+    A +E GE+ Q  +  + V ELGE++  +   R
Sbjct  239  ---------------KRA-DIFVEYEAQA-REEGEIQQLLVD-DPVAELGEVITGKKPGR  280

Query  450  KDNNQDVEDTKSLREWVERGNVIYKSVGMGLMDLVT  485
              + +                 ++ SVGM + D+  
Sbjct  281  TSDEE---------------ITLFDSVGMAIEDVAA  301



Lambda      K        H        a         alpha
   0.317    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00006768

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426766 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/m...  64.4    4e-12


>CDD:426766 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin 
family.  This family contains the bacterial Ornithine 
cyclodeaminase enzyme EC:4.3.1.12, which catalyzes the deamination 
of ornithine to proline. This family also contains mu-Crystallin 
the major component of the eye lens in several Australian 
marsupials, mRNA for this protein has also been found 
in human retina.
Length=313

 Score = 64.4 bits (157),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 99/276 (36%), Gaps = 65/276 (24%)

Query  115  QGTVTLLDADS-MPFGLINAHELTPFRTALATMMI---FNKRKRVRTVVVFGAGKQAYWH  170
              T  L D  +  P  L++A  LT  RTA A   +   +   K    + + G G QA + 
Sbjct  85   TATGVLNDPSTGYPLALMDATLLTALRTA-AVSAVAAKYLAPKDASVLAIIGNGVQAEFQ  143

Query  171  IRLALTLRAADIKRVVIVNRSFERAAMLLKDIYSTENSSWRGDVKFSAVSTDFGEYDRII  230
               A       I  V I +R         ++             +  A ++         
Sbjct  144  A-EAFR-AVFGIDEVRIYDRDPRATEKFARNAQ-------EPGFEVRACTS--------P  186

Query  231  QDAIHKSDAIFCCTPSIE--PLFPAELLTSREGRQKGRFISAIGSYRPHMAELHPDILRD  288
            ++A+  +D I   T      P+   E +      + G  I+A+G+ RP   EL  DIL  
Sbjct  187  EEAVEGADIIITVTADKANAPILKDEWV------KPGAHINAVGADRPGKTELDDDIL--  238

Query  289  EVNAHHSGRHFHKHIKRSGVVVVDSLEAALKEAGELIQAGIKPNQVVELGELLMVRDASR  348
                           KR+  + V+    A +E GE+ Q  +  + V ELGE++  +   R
Sbjct  239  ---------------KRA-DIFVEYEAQA-REEGEIQQLLVD-DPVAELGEVITGKKPGR  280

Query  349  KDNNQDVEDTKSLREWVERGNVIYKSVGMGLMDLVT  384
              + +                 ++ SVGM + D+  
Sbjct  281  TSDEE---------------ITLFDSVGMAIEDVAA  301



Lambda      K        H        a         alpha
   0.316    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00000706

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426766 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/m...  65.6    3e-12


>CDD:426766 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin 
family.  This family contains the bacterial Ornithine 
cyclodeaminase enzyme EC:4.3.1.12, which catalyzes the deamination 
of ornithine to proline. This family also contains mu-Crystallin 
the major component of the eye lens in several Australian 
marsupials, mRNA for this protein has also been found 
in human retina.
Length=313

 Score = 65.6 bits (160),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 99/276 (36%), Gaps = 65/276 (24%)

Query  182  QGTVTLLDADS-MPFGLINAHELTPFRTALATMMI---FNKRKRVRTVVVFGAGKQAYWH  237
              T  L D  +  P  L++A  LT  RTA A   +   +   K    + + G G QA + 
Sbjct  85   TATGVLNDPSTGYPLALMDATLLTALRTA-AVSAVAAKYLAPKDASVLAIIGNGVQAEFQ  143

Query  238  IRLALTLRAADIKRVVIVNRSFERAAMLLKDIYSTENSSWRGDVKFSAVSTDFGEYDRII  297
               A       I  V I +R         ++             +  A ++         
Sbjct  144  A-EAFR-AVFGIDEVRIYDRDPRATEKFARNAQ-------EPGFEVRACTS--------P  186

Query  298  QDAIHKSDAIFCCTPSIE--PLFPAELLTSREGRQKGRFISAIGSYRPHMAELHPDILRD  355
            ++A+  +D I   T      P+   E +      + G  I+A+G+ RP   EL  DIL  
Sbjct  187  EEAVEGADIIITVTADKANAPILKDEWV------KPGAHINAVGADRPGKTELDDDIL--  238

Query  356  EVNAHHSGRHFHKHIKRSGVVVVDSLEAALKEAGELIQAGIKPNQVVELGELLMVRDASR  415
                           KR+  + V+    A +E GE+ Q  +  + V ELGE++  +   R
Sbjct  239  ---------------KRA-DIFVEYEAQA-REEGEIQQLLVD-DPVAELGEVITGKKPGR  280

Query  416  KDNNQDVEDTKSLREWVERGNVIYKSVGMGLMDLVT  451
              + +                 ++ SVGM + D+  
Sbjct  281  TSDEE---------------ITLFDSVGMAIEDVAA  301



Lambda      K        H        a         alpha
   0.316    0.129    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00000707

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426766 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/m...  65.6    3e-12


>CDD:426766 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin 
family.  This family contains the bacterial Ornithine 
cyclodeaminase enzyme EC:4.3.1.12, which catalyzes the deamination 
of ornithine to proline. This family also contains mu-Crystallin 
the major component of the eye lens in several Australian 
marsupials, mRNA for this protein has also been found 
in human retina.
Length=313

 Score = 65.6 bits (160),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 99/276 (36%), Gaps = 65/276 (24%)

Query  182  QGTVTLLDADS-MPFGLINAHELTPFRTALATMMI---FNKRKRVRTVVVFGAGKQAYWH  237
              T  L D  +  P  L++A  LT  RTA A   +   +   K    + + G G QA + 
Sbjct  85   TATGVLNDPSTGYPLALMDATLLTALRTA-AVSAVAAKYLAPKDASVLAIIGNGVQAEFQ  143

Query  238  IRLALTLRAADIKRVVIVNRSFERAAMLLKDIYSTENSSWRGDVKFSAVSTDFGEYDRII  297
               A       I  V I +R         ++             +  A ++         
Sbjct  144  A-EAFR-AVFGIDEVRIYDRDPRATEKFARNAQ-------EPGFEVRACTS--------P  186

Query  298  QDAIHKSDAIFCCTPSIE--PLFPAELLTSREGRQKGRFISAIGSYRPHMAELHPDILRD  355
            ++A+  +D I   T      P+   E +      + G  I+A+G+ RP   EL  DIL  
Sbjct  187  EEAVEGADIIITVTADKANAPILKDEWV------KPGAHINAVGADRPGKTELDDDIL--  238

Query  356  EVNAHHSGRHFHKHIKRSGVVVVDSLEAALKEAGELIQAGIKPNQVVELGELLMVRDASR  415
                           KR+  + V+    A +E GE+ Q  +  + V ELGE++  +   R
Sbjct  239  ---------------KRA-DIFVEYEAQA-REEGEIQQLLVD-DPVAELGEVITGKKPGR  280

Query  416  KDNNQDVEDTKSLREWVERGNVIYKSVGMGLMDLVT  451
              + +                 ++ SVGM + D+  
Sbjct  281  TSDEE---------------ITLFDSVGMAIEDVAA  301



Lambda      K        H        a         alpha
   0.316    0.129    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00006769

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433280 pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) do...  212     2e-67


>CDD:433280 pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=145

 Score = 212 bits (542),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 75/147 (51%), Positives = 93/147 (63%), Gaps = 2/147 (1%)

Query  356  TTPSDLDLLHKWMNDPRVSAAWGEGGPKEKQEKFLRNNLTSRHSFPVIGCWDGKPFGYFE  415
               +DL+LLH+WMNDPRV+  W   GP E+  ++L       HS P IG  DG+PFGYFE
Sbjct  1    DPEADLELLHRWMNDPRVAFWWMLAGPLEQVREYLARLAADPHSHPYIGLLDGEPFGYFE  60

Query  416  IYWVKEDRLGALIGGADNYDRGIHLLVGEQEYRGSHRVAIWLSALVHYCWLADPRTQTVM  475
            IYW KEDRLG     A   DRGIHLL+GE  +RG       L ALVHY + ADPRT+ V+
Sbjct  61   IYWAKEDRLGEY-YDARPGDRGIHLLIGEPAFRGRGFTTALLRALVHYLF-ADPRTRRVV  118

Query  476  LEPRVDNEKIIQYLQNAGFYKEGEVTF  502
            +EP V NE+ I+ L+ AGF K  E+  
Sbjct  119  VEPDVRNERAIRLLERAGFRKVKEIDL  145



Lambda      K        H        a         alpha
   0.317    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 652562446


Query= TCONS_00006770

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433280 pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) do...  212     2e-67


>CDD:433280 pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=145

 Score = 212 bits (542),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 75/147 (51%), Positives = 93/147 (63%), Gaps = 2/147 (1%)

Query  356  TTPSDLDLLHKWMNDPRVSAAWGEGGPKEKQEKFLRNNLTSRHSFPVIGCWDGKPFGYFE  415
               +DL+LLH+WMNDPRV+  W   GP E+  ++L       HS P IG  DG+PFGYFE
Sbjct  1    DPEADLELLHRWMNDPRVAFWWMLAGPLEQVREYLARLAADPHSHPYIGLLDGEPFGYFE  60

Query  416  IYWVKEDRLGALIGGADNYDRGIHLLVGEQEYRGSHRVAIWLSALVHYCWLADPRTQTVM  475
            IYW KEDRLG     A   DRGIHLL+GE  +RG       L ALVHY + ADPRT+ V+
Sbjct  61   IYWAKEDRLGEY-YDARPGDRGIHLLIGEPAFRGRGFTTALLRALVHYLF-ADPRTRRVV  118

Query  476  LEPRVDNEKIIQYLQNAGFYKEGEVTF  502
            +EP V NE+ I+ L+ AGF K  E+  
Sbjct  119  VEPDVRNERAIRLLERAGFRKVKEIDL  145



Lambda      K        H        a         alpha
   0.317    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 652562446


Query= TCONS_00000709

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433280 pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) do...  187     2e-58


>CDD:433280 pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=145

 Score = 187 bits (478),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 68/129 (53%), Positives = 83/129 (64%), Gaps = 2/129 (2%)

Query  356  TTPSDLDLLHKWMNDPRVSAAWGEGGPKEKQEKFLRNNLTSRHSFPVIGCWDGKPFGYFE  415
               +DL+LLH+WMNDPRV+  W   GP E+  ++L       HS P IG  DG+PFGYFE
Sbjct  1    DPEADLELLHRWMNDPRVAFWWMLAGPLEQVREYLARLAADPHSHPYIGLLDGEPFGYFE  60

Query  416  IYWVKEDRLGALIGGADNYDRGIHLLVGEQEYRGSHRVAIWLSALVHYCWLADPRTQTVM  475
            IYW KEDRLG     A   DRGIHLL+GE  +RG       L ALVHY + ADPRT+ V+
Sbjct  61   IYWAKEDRLGEY-YDARPGDRGIHLLIGEPAFRGRGFTTALLRALVHYLF-ADPRTRRVV  118

Query  476  LEPRVDNEK  484
            +EP V NE+
Sbjct  119  VEPDVRNER  127



Lambda      K        H        a         alpha
   0.317    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0883    0.140     1.90     42.6     43.6 

Effective search space used: 595027938


Query= TCONS_00006771

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  133     3e-38


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 133 bits (337),  Expect = 3e-38, Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 27/217 (12%)

Query  1    MSITENLLSGMAAHIQEFNKNASLKPPEVDFSAPFRRVDFTTGIEGKIGRRLPDLTTPDA  60
            M +TE L+  +   ++            +D   PF R+ +   IE     +L      + 
Sbjct  129  MDLTEELIKEIFKEVEG-IAKELEGGTLLDLKKPFPRITYAEAIE-----KLNGKDVEEL  182

Query  61   LDQVSQLFRDLSLPIPKEPTLPRLLDELCGTYLEPECINPTFIINPPECLSPLSKSFIHP  120
                            K     R L EL    ++    NP ++ + P    P +      
Sbjct  183  GYG-----------SDKPDL--RFLLELV---IDKNKFNPLWVTDFPAEHHPFTMP--KD  224

Query  121  ANQQRVAARAELFIDGREIVNTYEEENSPFEQRRKFEDQVRYTKGTDEPAEIDESYLEAL  180
             +   +A   +L ++G EI       + P  Q  +FE+Q       +E  E    YL+AL
Sbjct  225  EDDPALAEAFDLVLNGVEIGGGSIRIHDPELQEERFEEQ---GLDPEEAEEKFGFYLDAL  281

Query  181  EWGLPSTGGWGCGIDRLCMLFTGTKRIGDVLPFGNLR  217
            ++G P  GG G G+DRL ML TG + I +V+ F   R
Sbjct  282  KYGAPPHGGLGIGLDRLVMLLTGLESIREVIAFPKTR  318



Lambda      K        H        a         alpha
   0.318    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00006772

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00000712

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  133     3e-38


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 133 bits (337),  Expect = 3e-38, Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 27/217 (12%)

Query  1    MSITENLLSGMAAHIQEFNKNASLKPPEVDFSAPFRRVDFTTGIEGKIGRRLPDLTTPDA  60
            M +TE L+  +   ++            +D   PF R+ +   IE     +L      + 
Sbjct  129  MDLTEELIKEIFKEVEG-IAKELEGGTLLDLKKPFPRITYAEAIE-----KLNGKDVEEL  182

Query  61   LDQVSQLFRDLSLPIPKEPTLPRLLDELCGTYLEPECINPTFIINPPECLSPLSKSFIHP  120
                            K     R L EL    ++    NP ++ + P    P +      
Sbjct  183  GYG-----------SDKPDL--RFLLELV---IDKNKFNPLWVTDFPAEHHPFTMP--KD  224

Query  121  ANQQRVAARAELFIDGREIVNTYEEENSPFEQRRKFEDQVRYTKGTDEPAEIDESYLEAL  180
             +   +A   +L ++G EI       + P  Q  +FE+Q       +E  E    YL+AL
Sbjct  225  EDDPALAEAFDLVLNGVEIGGGSIRIHDPELQEERFEEQ---GLDPEEAEEKFGFYLDAL  281

Query  181  EWGLPSTGGWGCGIDRLCMLFTGTKRIGDVLPFGNLR  217
            ++G P  GG G G+DRL ML TG + I +V+ F   R
Sbjct  282  KYGAPPHGGLGIGLDRLVMLLTGLESIREVIAFPKTR  318



Lambda      K        H        a         alpha
   0.318    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00000713

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  133     3e-38


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 133 bits (337),  Expect = 3e-38, Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 27/217 (12%)

Query  1    MSITENLLSGMAAHIQEFNKNASLKPPEVDFSAPFRRVDFTTGIEGKIGRRLPDLTTPDA  60
            M +TE L+  +   ++            +D   PF R+ +   IE     +L      + 
Sbjct  129  MDLTEELIKEIFKEVEG-IAKELEGGTLLDLKKPFPRITYAEAIE-----KLNGKDVEEL  182

Query  61   LDQVSQLFRDLSLPIPKEPTLPRLLDELCGTYLEPECINPTFIINPPECLSPLSKSFIHP  120
                            K     R L EL    ++    NP ++ + P    P +      
Sbjct  183  GYG-----------SDKPDL--RFLLELV---IDKNKFNPLWVTDFPAEHHPFTMP--KD  224

Query  121  ANQQRVAARAELFIDGREIVNTYEEENSPFEQRRKFEDQVRYTKGTDEPAEIDESYLEAL  180
             +   +A   +L ++G EI       + P  Q  +FE+Q       +E  E    YL+AL
Sbjct  225  EDDPALAEAFDLVLNGVEIGGGSIRIHDPELQEERFEEQ---GLDPEEAEEKFGFYLDAL  281

Query  181  EWGLPSTGGWGCGIDRLCMLFTGTKRIGDVLPFGNLR  217
            ++G P  GG G G+DRL ML TG + I +V+ F   R
Sbjct  282  KYGAPPHGGLGIGLDRLVMLLTGLESIREVIAFPKTR  318



Lambda      K        H        a         alpha
   0.318    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00006773

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  133     3e-38


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 133 bits (337),  Expect = 3e-38, Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 27/217 (12%)

Query  1    MSITENLLSGMAAHIQEFNKNASLKPPEVDFSAPFRRVDFTTGIEGKIGRRLPDLTTPDA  60
            M +TE L+  +   ++            +D   PF R+ +   IE     +L      + 
Sbjct  129  MDLTEELIKEIFKEVEG-IAKELEGGTLLDLKKPFPRITYAEAIE-----KLNGKDVEEL  182

Query  61   LDQVSQLFRDLSLPIPKEPTLPRLLDELCGTYLEPECINPTFIINPPECLSPLSKSFIHP  120
                            K     R L EL    ++    NP ++ + P    P +      
Sbjct  183  GYG-----------SDKPDL--RFLLELV---IDKNKFNPLWVTDFPAEHHPFTMP--KD  224

Query  121  ANQQRVAARAELFIDGREIVNTYEEENSPFEQRRKFEDQVRYTKGTDEPAEIDESYLEAL  180
             +   +A   +L ++G EI       + P  Q  +FE+Q       +E  E    YL+AL
Sbjct  225  EDDPALAEAFDLVLNGVEIGGGSIRIHDPELQEERFEEQ---GLDPEEAEEKFGFYLDAL  281

Query  181  EWGLPSTGGWGCGIDRLCMLFTGTKRIGDVLPFGNLR  217
            ++G P  GG G G+DRL ML TG + I +V+ F   R
Sbjct  282  KYGAPPHGGLGIGLDRLVMLLTGLESIREVIAFPKTR  318



Lambda      K        H        a         alpha
   0.318    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00000714

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00000715

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  133     3e-38


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 133 bits (337),  Expect = 3e-38, Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 27/217 (12%)

Query  1    MSITENLLSGMAAHIQEFNKNASLKPPEVDFSAPFRRVDFTTGIEGKIGRRLPDLTTPDA  60
            M +TE L+  +   ++            +D   PF R+ +   IE     +L      + 
Sbjct  129  MDLTEELIKEIFKEVEG-IAKELEGGTLLDLKKPFPRITYAEAIE-----KLNGKDVEEL  182

Query  61   LDQVSQLFRDLSLPIPKEPTLPRLLDELCGTYLEPECINPTFIINPPECLSPLSKSFIHP  120
                            K     R L EL    ++    NP ++ + P    P +      
Sbjct  183  GYG-----------SDKPDL--RFLLELV---IDKNKFNPLWVTDFPAEHHPFTMP--KD  224

Query  121  ANQQRVAARAELFIDGREIVNTYEEENSPFEQRRKFEDQVRYTKGTDEPAEIDESYLEAL  180
             +   +A   +L ++G EI       + P  Q  +FE+Q       +E  E    YL+AL
Sbjct  225  EDDPALAEAFDLVLNGVEIGGGSIRIHDPELQEERFEEQ---GLDPEEAEEKFGFYLDAL  281

Query  181  EWGLPSTGGWGCGIDRLCMLFTGTKRIGDVLPFGNLR  217
            ++G P  GG G G+DRL ML TG + I +V+ F   R
Sbjct  282  KYGAPPHGGLGIGLDRLVMLLTGLESIREVIAFPKTR  318



Lambda      K        H        a         alpha
   0.318    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00006774

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  133     3e-38


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 133 bits (337),  Expect = 3e-38, Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 27/217 (12%)

Query  1    MSITENLLSGMAAHIQEFNKNASLKPPEVDFSAPFRRVDFTTGIEGKIGRRLPDLTTPDA  60
            M +TE L+  +   ++            +D   PF R+ +   IE     +L      + 
Sbjct  129  MDLTEELIKEIFKEVEG-IAKELEGGTLLDLKKPFPRITYAEAIE-----KLNGKDVEEL  182

Query  61   LDQVSQLFRDLSLPIPKEPTLPRLLDELCGTYLEPECINPTFIINPPECLSPLSKSFIHP  120
                            K     R L EL    ++    NP ++ + P    P +      
Sbjct  183  GYG-----------SDKPDL--RFLLELV---IDKNKFNPLWVTDFPAEHHPFTMP--KD  224

Query  121  ANQQRVAARAELFIDGREIVNTYEEENSPFEQRRKFEDQVRYTKGTDEPAEIDESYLEAL  180
             +   +A   +L ++G EI       + P  Q  +FE+Q       +E  E    YL+AL
Sbjct  225  EDDPALAEAFDLVLNGVEIGGGSIRIHDPELQEERFEEQ---GLDPEEAEEKFGFYLDAL  281

Query  181  EWGLPSTGGWGCGIDRLCMLFTGTKRIGDVLPFGNLR  217
            ++G P  GG G G+DRL ML TG + I +V+ F   R
Sbjct  282  KYGAPPHGGLGIGLDRLVMLLTGLESIREVIAFPKTR  318



Lambda      K        H        a         alpha
   0.318    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00000716

Length=93
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460764 pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc finger....  89.9    4e-26


>CDD:460764 pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc finger.  Putative 
zinc binding domain with four conserved cysteine residues. 
This domain is found in the human disease protein TIMM8A. 
Members of this family such as Tim9 and Tim10 are involved 
in mitochondrial protein import. Members of this family seem 
to be localized to the mitochondrial intermembrane space.
Length=64

 Score = 89.9 bits (224),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 24/64 (38%), Positives = 37/64 (58%), Gaps = 1/64 (2%)

Query  16  KIAAAETEVEMVSDMFNRLTESCQKKCIPNDYREGDLNKGESVCLDRCVSKFFEVNIKVS  75
           +    E +     ++ N+LTE C  KCIP DY    L+ GE  CLDRCV K+ + + +V 
Sbjct  1   QFLMQEQQKANFQELVNKLTERCFDKCIP-DYPGSSLSSGEESCLDRCVEKYLDASNRVG  59

Query  76  EKMQ  79
           +++Q
Sbjct  60  KRLQ  63



Lambda      K        H        a         alpha
   0.316    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00006775

Length=93
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460764 pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc finger....  89.9    4e-26


>CDD:460764 pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc finger.  Putative 
zinc binding domain with four conserved cysteine residues. 
This domain is found in the human disease protein TIMM8A. 
Members of this family such as Tim9 and Tim10 are involved 
in mitochondrial protein import. Members of this family seem 
to be localized to the mitochondrial intermembrane space.
Length=64

 Score = 89.9 bits (224),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 24/64 (38%), Positives = 37/64 (58%), Gaps = 1/64 (2%)

Query  16  KIAAAETEVEMVSDMFNRLTESCQKKCIPNDYREGDLNKGESVCLDRCVSKFFEVNIKVS  75
           +    E +     ++ N+LTE C  KCIP DY    L+ GE  CLDRCV K+ + + +V 
Sbjct  1   QFLMQEQQKANFQELVNKLTERCFDKCIP-DYPGSSLSSGEESCLDRCVEKYLDASNRVG  59

Query  76  EKMQ  79
           +++Q
Sbjct  60  KRLQ  63



Lambda      K        H        a         alpha
   0.316    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00006776

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00006777

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402305 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif dom...  147     4e-44


>CDD:402305 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain.  RanBPM 
is a scaffolding protein and is important in regulating 
cellular function in both the immune system and the nervous 
system. This domain is at the C-terminus of the proteins and 
is the binding domain for the CRA motif (for CT11-RanBPM), 
which is comprised of approximately 100 amino acids at the 
C terminal of RanBPM. It was found to be important for the 
interaction of RanBPM with fragile X mental retardation protein 
(FMRP), but its functional significance has yet to be determined. 
This region contains CTLH and CRA domains annotated 
by SMART; however, these may be a single domain, and it is 
refereed to as a C-terminal to LisH motif.
Length=143

 Score = 147 bits (373),  Expect = 4e-44, Method: Composition-based stats.
 Identities = 60/151 (40%), Positives = 77/151 (51%), Gaps = 8/151 (5%)

Query  120  QFATMYHILHEMKENNNLLPAIQWSRENKESLEARGSNLEFELCRLQFVWLFHGGQGPAV  179
             F     IL  +  N ++  AI+W  ENK  L    SNLEFEL   QF+ L   G+    
Sbjct  1    VFKERNRILEAIL-NGDITEAIEWCNENKPELLKINSNLEFELRLQQFIELIRSGK----  55

Query  180  AGPQAALEYARREFHVFLPRYLVEIQQLMGAMAFSPNLQESPYRNIFDNPSAWSDVAQSF  239
                 ALEYAR     F   +L E+++LMG +AF      SPY+++   PS W  +A  F
Sbjct  56   --ILEALEYARENLAPFNEEHLKELEKLMGLLAFPDPTDSSPYKSLLS-PSRWEKLASEF  112

Query  240  TREFCSLLGLSADSPLYIAATAGAIALPTLL  270
             R    LLGLS++SPL I   AG  AL TL 
Sbjct  113  NRAILKLLGLSSESPLEILLKAGLSALKTLS  143



Lambda      K        H        a         alpha
   0.318    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00000718

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402305 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif dom...  146     1e-43


>CDD:402305 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain.  RanBPM 
is a scaffolding protein and is important in regulating 
cellular function in both the immune system and the nervous 
system. This domain is at the C-terminus of the proteins and 
is the binding domain for the CRA motif (for CT11-RanBPM), 
which is comprised of approximately 100 amino acids at the 
C terminal of RanBPM. It was found to be important for the 
interaction of RanBPM with fragile X mental retardation protein 
(FMRP), but its functional significance has yet to be determined. 
This region contains CTLH and CRA domains annotated 
by SMART; however, these may be a single domain, and it is 
refereed to as a C-terminal to LisH motif.
Length=143

 Score = 146 bits (372),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 60/151 (40%), Positives = 77/151 (51%), Gaps = 8/151 (5%)

Query  166  QFATMYHILHEMKENNNLLPAIQWSRENKESLEARGSNLEFELCRLQFVWLFHGGQGPAV  225
             F     IL  +  N ++  AI+W  ENK  L    SNLEFEL   QF+ L   G+    
Sbjct  1    VFKERNRILEAIL-NGDITEAIEWCNENKPELLKINSNLEFELRLQQFIELIRSGK----  55

Query  226  AGPQAALEYARREFHVFLPRYLVEIQQLMGAMAFSPNLQESPYRNIFDNPSAWSDVAQSF  285
                 ALEYAR     F   +L E+++LMG +AF      SPY+++   PS W  +A  F
Sbjct  56   --ILEALEYARENLAPFNEEHLKELEKLMGLLAFPDPTDSSPYKSLLS-PSRWEKLASEF  112

Query  286  TREFCSLLGLSADSPLYIAATAGAIALPTLL  316
             R    LLGLS++SPL I   AG  AL TL 
Sbjct  113  NRAILKLLGLSSESPLEILLKAGLSALKTLS  143



Lambda      K        H        a         alpha
   0.317    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00000717

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402305 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif dom...  146     1e-43


>CDD:402305 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain.  RanBPM 
is a scaffolding protein and is important in regulating 
cellular function in both the immune system and the nervous 
system. This domain is at the C-terminus of the proteins and 
is the binding domain for the CRA motif (for CT11-RanBPM), 
which is comprised of approximately 100 amino acids at the 
C terminal of RanBPM. It was found to be important for the 
interaction of RanBPM with fragile X mental retardation protein 
(FMRP), but its functional significance has yet to be determined. 
This region contains CTLH and CRA domains annotated 
by SMART; however, these may be a single domain, and it is 
refereed to as a C-terminal to LisH motif.
Length=143

 Score = 146 bits (372),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 60/151 (40%), Positives = 77/151 (51%), Gaps = 8/151 (5%)

Query  166  QFATMYHILHEMKENNNLLPAIQWSRENKESLEARGSNLEFELCRLQFVWLFHGGQGPAV  225
             F     IL  +  N ++  AI+W  ENK  L    SNLEFEL   QF+ L   G+    
Sbjct  1    VFKERNRILEAIL-NGDITEAIEWCNENKPELLKINSNLEFELRLQQFIELIRSGK----  55

Query  226  AGPQAALEYARREFHVFLPRYLVEIQQLMGAMAFSPNLQESPYRNIFDNPSAWSDVAQSF  285
                 ALEYAR     F   +L E+++LMG +AF      SPY+++   PS W  +A  F
Sbjct  56   --ILEALEYARENLAPFNEEHLKELEKLMGLLAFPDPTDSSPYKSLLS-PSRWEKLASEF  112

Query  286  TREFCSLLGLSADSPLYIAATAGAIALPTLL  316
             R    LLGLS++SPL I   AG  AL TL 
Sbjct  113  NRAILKLLGLSSESPLEILLKAGLSALKTLS  143



Lambda      K        H        a         alpha
   0.317    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00006778

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00000720

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402305 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif dom...  150     3e-46


>CDD:402305 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain.  RanBPM 
is a scaffolding protein and is important in regulating 
cellular function in both the immune system and the nervous 
system. This domain is at the C-terminus of the proteins and 
is the binding domain for the CRA motif (for CT11-RanBPM), 
which is comprised of approximately 100 amino acids at the 
C terminal of RanBPM. It was found to be important for the 
interaction of RanBPM with fragile X mental retardation protein 
(FMRP), but its functional significance has yet to be determined. 
This region contains CTLH and CRA domains annotated 
by SMART; however, these may be a single domain, and it is 
refereed to as a C-terminal to LisH motif.
Length=143

 Score = 150 bits (382),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 60/151 (40%), Positives = 77/151 (51%), Gaps = 8/151 (5%)

Query  56   QFATMYHILHEMKENNNLLPAIQWSRENKESLEARGSNLEFELCRLQFVWLFHGGQGPAV  115
             F     IL  +  N ++  AI+W  ENK  L    SNLEFEL   QF+ L   G+    
Sbjct  1    VFKERNRILEAIL-NGDITEAIEWCNENKPELLKINSNLEFELRLQQFIELIRSGK----  55

Query  116  AGPQAALEYARREFHVFLPRYLVEIQQLMGAMAFSPNLQESPYRNIFDNPSAWSDVAQSF  175
                 ALEYAR     F   +L E+++LMG +AF      SPY+++   PS W  +A  F
Sbjct  56   --ILEALEYARENLAPFNEEHLKELEKLMGLLAFPDPTDSSPYKSLLS-PSRWEKLASEF  112

Query  176  TREFCSLLGLSADSPLYIAATAGAIALPTLL  206
             R    LLGLS++SPL I   AG  AL TL 
Sbjct  113  NRAILKLLGLSSESPLEILLKAGLSALKTLS  143



Lambda      K        H        a         alpha
   0.319    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00006779

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00000722

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00000724

Length=295


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00000725

Length=292


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00006780

Length=292


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00000726

Length=141
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396369 pfam01775, Ribosomal_L18A, Ribosomal proteins 50S-L18A...  65.3    7e-16


>CDD:396369 pfam01775, Ribosomal_L18A, Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A. 
 This family includes: archaeal 50S ribosomal protein 
L18Ae, often referred to as L20e or LX; fungal 60S ribosomal 
protein L20; and higher eukaryote 60S ribosomal protein 
L18A.
Length=60

 Score = 65.3 bits (160),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 22/47 (47%), Positives = 30/47 (64%), Gaps = 0/47 (0%)

Query  80   RYDSRSGTHNMYKEFREMSRTEAVEALYQDMAARHRARFGSIHILKV  126
               SRSGTHN  KE+R ++   AVE +Y +M +RHRA+   I I +V
Sbjct  13   GEKSRSGTHNFTKEYRALNEEGAVEKVYSEMGSRHRAKRSQIQIEEV  59



Lambda      K        H        a         alpha
   0.324    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00000727

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425968 pfam00970, FAD_binding_6, Oxidoreductase FAD-binding d...  101     4e-29


>CDD:425968 pfam00970, FAD_binding_6, Oxidoreductase FAD-binding domain. 
 
Length=99

 Score = 101 bits (255),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 38/101 (38%), Positives = 60/101 (59%), Gaps = 2/101 (2%)

Query  76   DLKLAQIENLSPNTKRLRFEFPDKEAVSGLHVASALLTKFKPQGAEKPVIRPYTPVSDEE  135
             L L + E +S +T+  RF  P  + V GL V   L  +    G  + VIR YTP+S ++
Sbjct  1    PLTLVEKELVSHDTRIFRFALPHPDQVLGLPVGQHLFLRLPIDG--ELVIRSYTPISSDD  58

Query  136  QPGYLDLVVKVYPNGPMSEHLHSMNVDQRLEFKGPIPKYPW  176
              GYL+L+VKVYP G MS++L  + +   ++FKGP+ ++ +
Sbjct  59   DKGYLELLVKVYPGGKMSQYLDELKIGDTIDFKGPLGRFEY  99



Lambda      K        H        a         alpha
   0.315    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00000728

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396369 pfam01775, Ribosomal_L18A, Ribosomal proteins 50S-L18A...  59.9    3e-14


>CDD:396369 pfam01775, Ribosomal_L18A, Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A. 
 This family includes: archaeal 50S ribosomal protein 
L18Ae, often referred to as L20e or LX; fungal 60S ribosomal 
protein L20; and higher eukaryote 60S ribosomal protein 
L18A.
Length=60

 Score = 59.9 bits (146),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 20/43 (47%), Positives = 27/43 (63%), Gaps = 0/43 (0%)

Query  54  RYDSRSGTHNMYKEFREMSRTEAVEALYQDMAARHRARFGSIH  96
              SRSGTHN  KE+R ++   AVE +Y +M +RHRA+   I 
Sbjct  13  GEKSRSGTHNFTKEYRALNEEGAVEKVYSEMGSRHRAKRSQIQ  55



Lambda      K        H        a         alpha
   0.324    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00000729

Length=148
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396369 pfam01775, Ribosomal_L18A, Ribosomal proteins 50S-L18A...  66.4    3e-16


>CDD:396369 pfam01775, Ribosomal_L18A, Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A. 
 This family includes: archaeal 50S ribosomal protein 
L18Ae, often referred to as L20e or LX; fungal 60S ribosomal 
protein L20; and higher eukaryote 60S ribosomal protein 
L18A.
Length=60

 Score = 66.4 bits (163),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 22/47 (47%), Positives = 30/47 (64%), Gaps = 0/47 (0%)

Query  54  RYDSRSGTHNMYKEFREMSRTEAVEALYQDMAARHRARFGSIHILKV  100
              SRSGTHN  KE+R ++   AVE +Y +M +RHRA+   I I +V
Sbjct  13  GEKSRSGTHNFTKEYRALNEEGAVEKVYSEMGSRHRAKRSQIQIEEV  59



Lambda      K        H        a         alpha
   0.324    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00006781

Length=148
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396369 pfam01775, Ribosomal_L18A, Ribosomal proteins 50S-L18A...  66.4    3e-16


>CDD:396369 pfam01775, Ribosomal_L18A, Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A. 
 This family includes: archaeal 50S ribosomal protein 
L18Ae, often referred to as L20e or LX; fungal 60S ribosomal 
protein L20; and higher eukaryote 60S ribosomal protein 
L18A.
Length=60

 Score = 66.4 bits (163),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 22/47 (47%), Positives = 30/47 (64%), Gaps = 0/47 (0%)

Query  54  RYDSRSGTHNMYKEFREMSRTEAVEALYQDMAARHRARFGSIHILKV  100
              SRSGTHN  KE+R ++   AVE +Y +M +RHRA+   I I +V
Sbjct  13  GEKSRSGTHNFTKEYRALNEEGAVEKVYSEMGSRHRAKRSQIQIEEV  59



Lambda      K        H        a         alpha
   0.324    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00000730

Length=148
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396369 pfam01775, Ribosomal_L18A, Ribosomal proteins 50S-L18A...  66.4    3e-16


>CDD:396369 pfam01775, Ribosomal_L18A, Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A. 
 This family includes: archaeal 50S ribosomal protein 
L18Ae, often referred to as L20e or LX; fungal 60S ribosomal 
protein L20; and higher eukaryote 60S ribosomal protein 
L18A.
Length=60

 Score = 66.4 bits (163),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 22/47 (47%), Positives = 30/47 (64%), Gaps = 0/47 (0%)

Query  54  RYDSRSGTHNMYKEFREMSRTEAVEALYQDMAARHRARFGSIHILKV  100
              SRSGTHN  KE+R ++   AVE +Y +M +RHRA+   I I +V
Sbjct  13  GEKSRSGTHNFTKEYRALNEEGAVEKVYSEMGSRHRAKRSQIQIEEV  59



Lambda      K        H        a         alpha
   0.324    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00006782

Length=126
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396369 pfam01775, Ribosomal_L18A, Ribosomal proteins 50S-L18A...  66.1    3e-16


>CDD:396369 pfam01775, Ribosomal_L18A, Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A. 
 This family includes: archaeal 50S ribosomal protein 
L18Ae, often referred to as L20e or LX; fungal 60S ribosomal 
protein L20; and higher eukaryote 60S ribosomal protein 
L18A.
Length=60

 Score = 66.1 bits (162),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 22/47 (47%), Positives = 30/47 (64%), Gaps = 0/47 (0%)

Query  54  RYDSRSGTHNMYKEFREMSRTEAVEALYQDMAARHRARFGSIHILKV  100
              SRSGTHN  KE+R ++   AVE +Y +M +RHRA+   I I +V
Sbjct  13  GEKSRSGTHNFTKEYRALNEEGAVEKVYSEMGSRHRAKRSQIQIEEV  59



Lambda      K        H        a         alpha
   0.325    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00006783

Length=148
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396369 pfam01775, Ribosomal_L18A, Ribosomal proteins 50S-L18A...  66.4    3e-16


>CDD:396369 pfam01775, Ribosomal_L18A, Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A. 
 This family includes: archaeal 50S ribosomal protein 
L18Ae, often referred to as L20e or LX; fungal 60S ribosomal 
protein L20; and higher eukaryote 60S ribosomal protein 
L18A.
Length=60

 Score = 66.4 bits (163),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 22/47 (47%), Positives = 30/47 (64%), Gaps = 0/47 (0%)

Query  54  RYDSRSGTHNMYKEFREMSRTEAVEALYQDMAARHRARFGSIHILKV  100
              SRSGTHN  KE+R ++   AVE +Y +M +RHRA+   I I +V
Sbjct  13  GEKSRSGTHNFTKEYRALNEEGAVEKVYSEMGSRHRAKRSQIQIEEV  59



Lambda      K        H        a         alpha
   0.324    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00006784

Length=172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425503 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding d...  116     4e-35


>CDD:425503 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain. 
 Xanthine dehydrogenases, that also bind FAD/NAD, have essentially 
no similarity.
Length=109

 Score = 116 bits (294),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 52/109 (48%), Positives = 71/109 (65%), Gaps = 1/109 (1%)

Query  35   LIAGGTGITPMYQLARKIFKDPEDQTKVTLVFGNVREEDILLKKELEELENTYPRRFRAF  94
            +IAGGTGI P+  + R I +DP+D T+V LVFGN  E+DIL ++EL+EL   +P R    
Sbjct  1    MIAGGTGIAPVRSMLRAILEDPKDPTQVVLVFGNRNEDDILYREELDELAEKHPGRLTVV  60

Query  95   YLLDHPPKEWTGGKGYITKELLKTVLPEPKEENIKIFVCGPPGMYKSIS  143
            Y++  P   WTGGKG +   LL+  L  P EE   ++VCGPPGM K++ 
Sbjct  61   YVVSRPEAGWTGGKGRVQDALLEDHLSLPDEETH-VYVCGPPGMIKAVR  108



Lambda      K        H        a         alpha
   0.317    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00006785

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00000732

Length=172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425968 pfam00970, FAD_binding_6, Oxidoreductase FAD-binding d...  100     1e-28


>CDD:425968 pfam00970, FAD_binding_6, Oxidoreductase FAD-binding domain. 
 
Length=99

 Score = 100 bits (251),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 38/96 (40%), Positives = 56/96 (58%), Gaps = 2/96 (2%)

Query  76   DLKLAQIENLSPNTKRLRFEFPDKEAVSGLHVASALLTKFKPQGAEKPVIRPYTPVSDEG  135
             L L + E +S +T+  RF  P  + V GL V   L  +    G  + VIR YTP+S + 
Sbjct  1    PLTLVEKELVSHDTRIFRFALPHPDQVLGLPVGQHLFLRLPIDG--ELVIRSYTPISSDD  58

Query  136  QPGYLDLVVKVYPNGPMSEHLHSMNVDQRLEFKGPI  171
              GYL+L+VKVYP G MS++L  + +   ++FKGP+
Sbjct  59   DKGYLELLVKVYPGGKMSQYLDELKIGDTIDFKGPL  94



Lambda      K        H        a         alpha
   0.316    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00000731

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00000733

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425503 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding d...  118     9e-34
CDD:425968 pfam00970, FAD_binding_6, Oxidoreductase FAD-binding d...  100     3e-27


>CDD:425503 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain. 
 Xanthine dehydrogenases, that also bind FAD/NAD, have essentially 
no similarity.
Length=109

 Score = 118 bits (297),  Expect = 9e-34, Method: Composition-based stats.
 Identities = 52/109 (48%), Positives = 71/109 (65%), Gaps = 1/109 (1%)

Query  186  LIAGGTGITPMYQLARKIFKDPEDQTKVTLVFGNVREEDILLKKELEELENTYPRRFRAF  245
            +IAGGTGI P+  + R I +DP+D T+V LVFGN  E+DIL ++EL+EL   +P R    
Sbjct  1    MIAGGTGIAPVRSMLRAILEDPKDPTQVVLVFGNRNEDDILYREELDELAEKHPGRLTVV  60

Query  246  YLLDHPPKEWTGGKGYITKELLKTVLPEPKEENIKIFVCGPPGMYKSIS  294
            Y++  P   WTGGKG +   LL+  L  P EE   ++VCGPPGM K++ 
Sbjct  61   YVVSRPEAGWTGGKGRVQDALLEDHLSLPDEETH-VYVCGPPGMIKAVR  108


>CDD:425968 pfam00970, FAD_binding_6, Oxidoreductase FAD-binding domain. 
 
Length=99

 Score = 100 bits (252),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 38/101 (38%), Positives = 60/101 (59%), Gaps = 2/101 (2%)

Query  76   DLKLAQIENLSPNTKRLRFEFPDKEAVSGLHVASALLTKFKPQGAEKPVIRPYTPVSDEE  135
             L L + E +S +T+  RF  P  + V GL V   L  +    G  + VIR YTP+S ++
Sbjct  1    PLTLVEKELVSHDTRIFRFALPHPDQVLGLPVGQHLFLRLPIDG--ELVIRSYTPISSDD  58

Query  136  QPGYLDLVVKVYPNGPMSEHLHSMNVDQRLEFKGPIPKYPW  176
              GYL+L+VKVYP G MS++L  + +   ++FKGP+ ++ +
Sbjct  59   DKGYLELLVKVYPGGKMSQYLDELKIGDTIDFKGPLGRFEY  99



Lambda      K        H        a         alpha
   0.316    0.138    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00006786

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00000734

Length=838
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425689 pfam00449, Urease_alpha, Urease alpha-subunit, N-termi...  240     4e-76
CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family. This f...  210     1e-61
CDD:459909 pfam00699, Urease_beta, Urease beta subunit. This subu...  198     7e-61
CDD:459850 pfam00547, Urease_gamma, Urease, gamma subunit. Urease...  191     6e-58


>CDD:425689 pfam00449, Urease_alpha, Urease alpha-subunit, N-terminal domain. 
 The N-terminal domain is a composite domain and plays 
a major trimer stabilizing role by contacting the catalytic 
domain of the symmetry related alpha-subunit.
Length=120

 Score = 240 bits (616),  Expect = 4e-76, Method: Composition-based stats.
 Identities = 79/120 (66%), Positives = 96/120 (80%), Gaps = 0/120 (0%)

Query  273  TMDREAYARMFGPTTGDLVRLGLTNLWVRVEKDCTVYGDECAFGGGKTLREGMGQSSERS  332
             + REAYA M+GPTTGD +RLG T+L++ VEKD TVYGDE  FGGGK +R+GMGQS  R+
Sbjct  1    KISREAYADMYGPTTGDRIRLGDTDLFIEVEKDLTVYGDEVKFGGGKVIRDGMGQSQGRT  60

Query  333  ATECLDTVITNALIIDWSGIYKADIGIKNGLISAIGKAGNPDMMDGVHPDMIVGSSTDVI  392
              + LD VITNALI+D++GI KADIGIK+G I  IGKAGNPD MDGV P M++G ST+VI
Sbjct  61   RDDALDLVITNALILDYTGIVKADIGIKDGRIVGIGKAGNPDTMDGVTPGMVIGPSTEVI  120


>CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family.  This family 
of enzymes are a a large metal dependent hydrolase superfamily. 
The family includes Adenine deaminase EC:3.5.4.2 that hydrolyzes 
adenine to form hypoxanthine and ammonia. Adenine deaminases 
reaction is important for adenine utilisation as a 
purine and also as a nitrogen source. This family also includes 
dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, 
EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 
6-phosphate + H2O <=> D-glucosamine 6-phosphate 
+ acetate. This family includes the catalytic domain 
of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are 
also included.
Length=334

 Score = 210 bits (535),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 96/362 (27%), Positives = 138/362 (38%), Gaps = 65/362 (18%)

Query  398  IVTAGGFDTHIHF---------ICPQQVDEALASGITTFLGGGTGPSTGTNATTCTPGPT  448
            IV  G  D H+H          + P+   EAL  GITT L  GT       ATT T    
Sbjct  1    IVLPGLIDAHVHLEMGLLRGIPVPPEFAYEALRLGITTMLKSGTTTVLDMGATTSTG---  57

Query  449  LMRQMIQACDGLPINVGITGK-------GNDSGGKSIEEQIRAGA------------AGL  489
             +  +++A + LP+ +   G        G   G K++ E+++AGA             GL
Sbjct  58   -IEALLEAAEELPLGLRFLGPGCSLDTDGELEGRKALREKLKAGAEFIKGMADGVVFVGL  116

Query  490  KLHEDWGSTPAAIDTCLDMCDKFDVQCMIHTDTLNESGFVEQTVKSFKNRTIHTYHTEGA  549
              H     +   +   L+   K+ +   IH   L   G VE  + +F     H  H E A
Sbjct  117  APHGAPTFSDDELKAALEEAKKYGLPVAIHA--LETKGEVEDAIAAFGGGIEHGTHLEVA  174

Query  550  GGGHAPDIISVVEHPNVLPSSTNPTRPFTMNTLDEHLDMLMVCHHLSKNIPEDVAFAESR  609
              G   DII ++    V  S T        N L EHL    V H           F+ S+
Sbjct  175  ESGGLLDIIKLILAHGVHLSPT------EANLLAEHLKGAGVAH---------CPFSNSK  219

Query  610  IRAETIAAEDVLHDLGAISMMSSDSQAMGRCGEVILRTWNTAHKNKAQRGPLKEDEGTGA  669
            +R+  IA    L D G    + +D    G    ++          + Q  P         
Sbjct  220  LRSGRIALRKALED-GVKVGLGTDGAGSGNSLNMLEEL---RLALELQFDP--------E  267

Query  670  DNFRVKRYISKYTINPAIAQGMSHLIGSVEVGKLADLVIWH----PSTFGTKPAQVLKSG  725
                    +   TINPA A G+   +GS+EVGK ADLV+       + FG KP   +K  
Sbjct  268  GGLSPLEALRMATINPAKALGLDDKVGSIEVGKDADLVVVDLDPLAAFFGLKPDGNVKKV  327

Query  726  MI  727
            ++
Sbjct  328  IV  329


>CDD:459909 pfam00699, Urease_beta, Urease beta subunit.  This subunit is 
known as alpha in Heliobacter.
Length=98

 Score = 198 bits (507),  Expect = 7e-61, Method: Composition-based stats.
 Identities = 61/99 (62%), Positives = 71/99 (72%), Gaps = 1/99 (1%)

Query  138  PGAVLPVKNERITLNDGRKRIRLKVMSKGDRPIQVGSHYHFIETNPQLHFDRLRAYGYRL  197
            PG ++   +  I LN GR+ I L V + GDRPIQVGSHYHF E NP L FDR  AYG RL
Sbjct  1    PGEIIT-GDGDIELNAGRETITLTVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRL  59

Query  198  DIPAGTSVRFEPGDTKTVTLVEIAGNRIIKGGNSIASGK  236
            DIPAGT+VRFEPGDTKTVTLV I G R++ G N + +G 
Sbjct  60   DIPAGTAVRFEPGDTKTVTLVPIGGARVVYGFNGLVNGP  98


>CDD:459850 pfam00547, Urease_gamma, Urease, gamma subunit.  Urease is a 
nickel-binding enzyme that catalyzes the hydrolysis of urea 
to carbon dioxide and ammonia.
Length=99

 Score = 191 bits (487),  Expect = 6e-58, Method: Composition-based stats.
 Identities = 59/100 (59%), Positives = 73/100 (73%), Gaps = 1/100 (1%)

Query  1   MHLIPKELDKLVISQLGFLAQRRLARGVRLNHAEAAALISSNLQELIRDGHYSVADLMSI  60
           MHL P+E DKL++   G LA+RRLARG++LN+ EA ALI+  L E  RDG  SVA+LM +
Sbjct  1   MHLTPREQDKLLLFVAGELARRRLARGLKLNYPEAVALIADELLEGARDGK-SVAELMQL  59

Query  61  GKTMLGRRHVLPSVVHTLVELQVEGTFPTGTYLVTVHHPI  100
           G+T+LGR  V+P V   L E+QVE TFP GT LVTVH PI
Sbjct  60  GRTVLGRDDVMPGVPEMLPEVQVEATFPDGTKLVTVHDPI  99



Lambda      K        H        a         alpha
   0.318    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1066586902


Query= TCONS_00000735

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00000736

Length=766
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425689 pfam00449, Urease_alpha, Urease alpha-subunit, N-termi...  241     6e-77
CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family. This f...  209     9e-62
CDD:459909 pfam00699, Urease_beta, Urease beta subunit. This subu...  197     7e-61
CDD:459850 pfam00547, Urease_gamma, Urease, gamma subunit. Urease...  190     3e-58


>CDD:425689 pfam00449, Urease_alpha, Urease alpha-subunit, N-terminal domain. 
 The N-terminal domain is a composite domain and plays 
a major trimer stabilizing role by contacting the catalytic 
domain of the symmetry related alpha-subunit.
Length=120

 Score = 241 bits (618),  Expect = 6e-77, Method: Composition-based stats.
 Identities = 79/120 (66%), Positives = 96/120 (80%), Gaps = 0/120 (0%)

Query  273  TMDREAYARMFGPTTGDLVRLGLTNLWVRVEKDCTVYGDECAFGGGKTLREGMGQSSERS  332
             + REAYA M+GPTTGD +RLG T+L++ VEKD TVYGDE  FGGGK +R+GMGQS  R+
Sbjct  1    KISREAYADMYGPTTGDRIRLGDTDLFIEVEKDLTVYGDEVKFGGGKVIRDGMGQSQGRT  60

Query  333  ATECLDTVITNALIIDWSGIYKADIGIKNGLISAIGKAGNPDMMDGVHPDMIVGSSTDVI  392
              + LD VITNALI+D++GI KADIGIK+G I  IGKAGNPD MDGV P M++G ST+VI
Sbjct  61   RDDALDLVITNALILDYTGIVKADIGIKDGRIVGIGKAGNPDTMDGVTPGMVIGPSTEVI  120


>CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family.  This family 
of enzymes are a a large metal dependent hydrolase superfamily. 
The family includes Adenine deaminase EC:3.5.4.2 that hydrolyzes 
adenine to form hypoxanthine and ammonia. Adenine deaminases 
reaction is important for adenine utilisation as a 
purine and also as a nitrogen source. This family also includes 
dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, 
EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 
6-phosphate + H2O <=> D-glucosamine 6-phosphate 
+ acetate. This family includes the catalytic domain 
of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are 
also included.
Length=334

 Score = 209 bits (533),  Expect = 9e-62, Method: Composition-based stats.
 Identities = 96/362 (27%), Positives = 138/362 (38%), Gaps = 65/362 (18%)

Query  398  IVTAGGFDTHIHF---------ICPQQVDEALASGITTFLGGGTGPSTGTNATTCTPGPT  448
            IV  G  D H+H          + P+   EAL  GITT L  GT       ATT T    
Sbjct  1    IVLPGLIDAHVHLEMGLLRGIPVPPEFAYEALRLGITTMLKSGTTTVLDMGATTSTG---  57

Query  449  LMRQMIQACDGLPINVGITGK-------GNDSGGKSIEEQIRAGA------------AGL  489
             +  +++A + LP+ +   G        G   G K++ E+++AGA             GL
Sbjct  58   -IEALLEAAEELPLGLRFLGPGCSLDTDGELEGRKALREKLKAGAEFIKGMADGVVFVGL  116

Query  490  KLHEDWGSTPAAIDTCLDMCDKFDVQCMIHTDTLNESGFVEQTVKSFKNRTIHTYHTEGA  549
              H     +   +   L+   K+ +   IH   L   G VE  + +F     H  H E A
Sbjct  117  APHGAPTFSDDELKAALEEAKKYGLPVAIHA--LETKGEVEDAIAAFGGGIEHGTHLEVA  174

Query  550  GGGHAPDIISVVEHPNVLPSSTNPTRPFTMNTLDEHLDMLMVCHHLSKNIPEDVAFAESR  609
              G   DII ++    V  S T        N L EHL    V H           F+ S+
Sbjct  175  ESGGLLDIIKLILAHGVHLSPT------EANLLAEHLKGAGVAH---------CPFSNSK  219

Query  610  IRAETIAAEDVLHDLGAISMMSSDSQAMGRCGEVILRTWNTAHKNKAQRGPLKEDEGTGA  669
            +R+  IA    L D G    + +D    G    ++          + Q  P         
Sbjct  220  LRSGRIALRKALED-GVKVGLGTDGAGSGNSLNMLEEL---RLALELQFDP--------E  267

Query  670  DNFRVKRYISKYTINPAIAQGMSHLIGSVEVGKLADLVIWH----PSTFGTKPAQVLKSG  725
                    +   TINPA A G+   +GS+EVGK ADLV+       + FG KP   +K  
Sbjct  268  GGLSPLEALRMATINPAKALGLDDKVGSIEVGKDADLVVVDLDPLAAFFGLKPDGNVKKV  327

Query  726  MI  727
            ++
Sbjct  328  IV  329


>CDD:459909 pfam00699, Urease_beta, Urease beta subunit.  This subunit is 
known as alpha in Heliobacter.
Length=98

 Score = 197 bits (505),  Expect = 7e-61, Method: Composition-based stats.
 Identities = 61/99 (62%), Positives = 71/99 (72%), Gaps = 1/99 (1%)

Query  138  PGAVLPVKNERITLNDGRKRIRLKVMSKGDRPIQVGSHYHFIETNPQLHFDRLRAYGYRL  197
            PG ++   +  I LN GR+ I L V + GDRPIQVGSHYHF E NP L FDR  AYG RL
Sbjct  1    PGEIIT-GDGDIELNAGRETITLTVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRL  59

Query  198  DIPAGTSVRFEPGDTKTVTLVEIAGNRIIKGGNSIASGK  236
            DIPAGT+VRFEPGDTKTVTLV I G R++ G N + +G 
Sbjct  60   DIPAGTAVRFEPGDTKTVTLVPIGGARVVYGFNGLVNGP  98


>CDD:459850 pfam00547, Urease_gamma, Urease, gamma subunit.  Urease is a 
nickel-binding enzyme that catalyzes the hydrolysis of urea 
to carbon dioxide and ammonia.
Length=99

 Score = 190 bits (486),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 59/100 (59%), Positives = 73/100 (73%), Gaps = 1/100 (1%)

Query  1   MHLIPKELDKLVISQLGFLAQRRLARGVRLNHAEAAALISSNLQELIRDGHYSVADLMSI  60
           MHL P+E DKL++   G LA+RRLARG++LN+ EA ALI+  L E  RDG  SVA+LM +
Sbjct  1   MHLTPREQDKLLLFVAGELARRRLARGLKLNYPEAVALIADELLEGARDGK-SVAELMQL  59

Query  61  GKTMLGRRHVLPSVVHTLVELQVEGTFPTGTYLVTVHHPI  100
           G+T+LGR  V+P V   L E+QVE TFP GT LVTVH PI
Sbjct  60  GRTVLGRDDVMPGVPEMLPEVQVEATFPDGTKLVTVHDPI  99



Lambda      K        H        a         alpha
   0.318    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 977862144


Query= TCONS_00006787

Length=690
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425689 pfam00449, Urease_alpha, Urease alpha-subunit, N-termi...  239     8e-77
CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family. This f...  209     3e-62
CDD:459909 pfam00699, Urease_beta, Urease beta subunit. This subu...  198     2e-61
CDD:459850 pfam00547, Urease_gamma, Urease, gamma subunit. Urease...  87.1    3e-21


>CDD:425689 pfam00449, Urease_alpha, Urease alpha-subunit, N-terminal domain. 
 The N-terminal domain is a composite domain and plays 
a major trimer stabilizing role by contacting the catalytic 
domain of the symmetry related alpha-subunit.
Length=120

 Score = 239 bits (613),  Expect = 8e-77, Method: Composition-based stats.
 Identities = 79/120 (66%), Positives = 96/120 (80%), Gaps = 0/120 (0%)

Query  216  TMDREAYARMFGPTTGDLVRLGLTNLWVRVEKDCTVYGDECAFGGGKTLREGMGQSSERS  275
             + REAYA M+GPTTGD +RLG T+L++ VEKD TVYGDE  FGGGK +R+GMGQS  R+
Sbjct  1    KISREAYADMYGPTTGDRIRLGDTDLFIEVEKDLTVYGDEVKFGGGKVIRDGMGQSQGRT  60

Query  276  ATECLDTVITNALIIDWSGIYKADIGIKNGLISAIGKAGNPDMMDGVHPDMIVGSSTDVI  335
              + LD VITNALI+D++GI KADIGIK+G I  IGKAGNPD MDGV P M++G ST+VI
Sbjct  61   RDDALDLVITNALILDYTGIVKADIGIKDGRIVGIGKAGNPDTMDGVTPGMVIGPSTEVI  120


>CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family.  This family 
of enzymes are a a large metal dependent hydrolase superfamily. 
The family includes Adenine deaminase EC:3.5.4.2 that hydrolyzes 
adenine to form hypoxanthine and ammonia. Adenine deaminases 
reaction is important for adenine utilisation as a 
purine and also as a nitrogen source. This family also includes 
dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, 
EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 
6-phosphate + H2O <=> D-glucosamine 6-phosphate 
+ acetate. This family includes the catalytic domain 
of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are 
also included.
Length=334

 Score = 209 bits (533),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 96/362 (27%), Positives = 138/362 (38%), Gaps = 65/362 (18%)

Query  341  IVTAGGFDTHIHF---------ICPQQVDEALASGITTFLGGGTGPSTGTNATTCTPGPT  391
            IV  G  D H+H          + P+   EAL  GITT L  GT       ATT T    
Sbjct  1    IVLPGLIDAHVHLEMGLLRGIPVPPEFAYEALRLGITTMLKSGTTTVLDMGATTSTG---  57

Query  392  LMRQMIQACDGLPINVGITGK-------GNDSGGKSIEEQIRAGA------------AGL  432
             +  +++A + LP+ +   G        G   G K++ E+++AGA             GL
Sbjct  58   -IEALLEAAEELPLGLRFLGPGCSLDTDGELEGRKALREKLKAGAEFIKGMADGVVFVGL  116

Query  433  KLHEDWGSTPAAIDTCLDMCDKFDVQCMIHTDTLNESGFVEQTVKSFKNRTIHTYHTEGA  492
              H     +   +   L+   K+ +   IH   L   G VE  + +F     H  H E A
Sbjct  117  APHGAPTFSDDELKAALEEAKKYGLPVAIHA--LETKGEVEDAIAAFGGGIEHGTHLEVA  174

Query  493  GGGHAPDIISVVEHPNVLPSSTNPTRPFTMNTLDEHLDMLMVCHHLSKNIPEDVAFAESR  552
              G   DII ++    V  S T        N L EHL    V H           F+ S+
Sbjct  175  ESGGLLDIIKLILAHGVHLSPT------EANLLAEHLKGAGVAH---------CPFSNSK  219

Query  553  IRAETIAAEDVLHDLGAISMMSSDSQAMGRCGEVILRTWNTAHKNKAQRGPLKEDEGTGA  612
            +R+  IA    L D G    + +D    G    ++          + Q  P         
Sbjct  220  LRSGRIALRKALED-GVKVGLGTDGAGSGNSLNMLEEL---RLALELQFDP--------E  267

Query  613  DNFRVKRYISKYTINPAIAQGMSHLIGSVEVGKLADLVIWH----PSTFGTKPAQVLKSG  668
                    +   TINPA A G+   +GS+EVGK ADLV+       + FG KP   +K  
Sbjct  268  GGLSPLEALRMATINPAKALGLDDKVGSIEVGKDADLVVVDLDPLAAFFGLKPDGNVKKV  327

Query  669  MI  670
            ++
Sbjct  328  IV  329


>CDD:459909 pfam00699, Urease_beta, Urease beta subunit.  This subunit is 
known as alpha in Heliobacter.
Length=98

 Score = 198 bits (507),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 61/99 (62%), Positives = 71/99 (72%), Gaps = 1/99 (1%)

Query  81   PGAVLPVKNERITLNDGRKRIRLKVMSKGDRPIQVGSHYHFIETNPQLHFDRLRAYGYRL  140
            PG ++   +  I LN GR+ I L V + GDRPIQVGSHYHF E NP L FDR  AYG RL
Sbjct  1    PGEIIT-GDGDIELNAGRETITLTVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRL  59

Query  141  DIPAGTSVRFEPGDTKTVTLVEIAGNRIIKGGNSIASGK  179
            DIPAGT+VRFEPGDTKTVTLV I G R++ G N + +G 
Sbjct  60   DIPAGTAVRFEPGDTKTVTLVPIGGARVVYGFNGLVNGP  98


>CDD:459850 pfam00547, Urease_gamma, Urease, gamma subunit.  Urease is a 
nickel-binding enzyme that catalyzes the hydrolysis of urea 
to carbon dioxide and ammonia.
Length=99

 Score = 87.1 bits (217),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 31/43 (72%), Gaps = 0/43 (0%)

Query  1   MSIGKTMLGRRHVLPSVVHTLVELQVEGTFPTGTYLVTVHHPI  43
           M +G+T+LGR  V+P V   L E+QVE TFP GT LVTVH PI
Sbjct  57  MQLGRTVLGRDDVMPGVPEMLPEVQVEATFPDGTKLVTVHDPI  99



Lambda      K        H        a         alpha
   0.317    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 880449630


Query= TCONS_00006788

Length=769
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425689 pfam00449, Urease_alpha, Urease alpha-subunit, N-termi...  240     2e-76
CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family. This f...  209     1e-61
CDD:459909 pfam00699, Urease_beta, Urease beta subunit. This subu...  198     5e-61
CDD:459850 pfam00547, Urease_gamma, Urease, gamma subunit. Urease...  191     3e-58


>CDD:425689 pfam00449, Urease_alpha, Urease alpha-subunit, N-terminal domain. 
 The N-terminal domain is a composite domain and plays 
a major trimer stabilizing role by contacting the catalytic 
domain of the symmetry related alpha-subunit.
Length=120

 Score = 240 bits (616),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 79/120 (66%), Positives = 96/120 (80%), Gaps = 0/120 (0%)

Query  273  TMDREAYARMFGPTTGDLVRLGLTNLWVRVEKDCTVYGDECAFGGGKTLREGMGQSSERS  332
             + REAYA M+GPTTGD +RLG T+L++ VEKD TVYGDE  FGGGK +R+GMGQS  R+
Sbjct  1    KISREAYADMYGPTTGDRIRLGDTDLFIEVEKDLTVYGDEVKFGGGKVIRDGMGQSQGRT  60

Query  333  ATECLDTVITNALIIDWSGIYKADIGIKNGLISAIGKAGNPDMMDGVHPDMIVGSSTDVI  392
              + LD VITNALI+D++GI KADIGIK+G I  IGKAGNPD MDGV P M++G ST+VI
Sbjct  61   RDDALDLVITNALILDYTGIVKADIGIKDGRIVGIGKAGNPDTMDGVTPGMVIGPSTEVI  120


>CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family.  This family 
of enzymes are a a large metal dependent hydrolase superfamily. 
The family includes Adenine deaminase EC:3.5.4.2 that hydrolyzes 
adenine to form hypoxanthine and ammonia. Adenine deaminases 
reaction is important for adenine utilisation as a 
purine and also as a nitrogen source. This family also includes 
dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, 
EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 
6-phosphate + H2O <=> D-glucosamine 6-phosphate 
+ acetate. This family includes the catalytic domain 
of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are 
also included.
Length=334

 Score = 209 bits (533),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 96/362 (27%), Positives = 138/362 (38%), Gaps = 65/362 (18%)

Query  398  IVTAGGFDTHIHF---------ICPQQVDEALASGITTFLGGGTGPSTGTNATTCTPGPT  448
            IV  G  D H+H          + P+   EAL  GITT L  GT       ATT T    
Sbjct  1    IVLPGLIDAHVHLEMGLLRGIPVPPEFAYEALRLGITTMLKSGTTTVLDMGATTSTG---  57

Query  449  LMRQMIQACDGLPINVGITGK-------GNDSGGKSIEEQIRAGA------------AGL  489
             +  +++A + LP+ +   G        G   G K++ E+++AGA             GL
Sbjct  58   -IEALLEAAEELPLGLRFLGPGCSLDTDGELEGRKALREKLKAGAEFIKGMADGVVFVGL  116

Query  490  KLHEDWGSTPAAIDTCLDMCDKFDVQCMIHTDTLNESGFVEQTVKSFKNRTIHTYHTEGA  549
              H     +   +   L+   K+ +   IH   L   G VE  + +F     H  H E A
Sbjct  117  APHGAPTFSDDELKAALEEAKKYGLPVAIHA--LETKGEVEDAIAAFGGGIEHGTHLEVA  174

Query  550  GGGHAPDIISVVEHPNVLPSSTNPTRPFTMNTLDEHLDMLMVCHHLSKNIPEDVAFAESR  609
              G   DII ++    V  S T        N L EHL    V H           F+ S+
Sbjct  175  ESGGLLDIIKLILAHGVHLSPT------EANLLAEHLKGAGVAH---------CPFSNSK  219

Query  610  IRAETIAAEDVLHDLGAISMMSSDSQAMGRCGEVILRTWNTAHKNKAQRGPLKEDEGTGA  669
            +R+  IA    L D G    + +D    G    ++          + Q  P         
Sbjct  220  LRSGRIALRKALED-GVKVGLGTDGAGSGNSLNMLEEL---RLALELQFDP--------E  267

Query  670  DNFRVKRYISKYTINPAIAQGMSHLIGSVEVGKLADLVIWH----PSTFGTKPAQVLKSG  725
                    +   TINPA A G+   +GS+EVGK ADLV+       + FG KP   +K  
Sbjct  268  GGLSPLEALRMATINPAKALGLDDKVGSIEVGKDADLVVVDLDPLAAFFGLKPDGNVKKV  327

Query  726  MI  727
            ++
Sbjct  328  IV  329


>CDD:459909 pfam00699, Urease_beta, Urease beta subunit.  This subunit is 
known as alpha in Heliobacter.
Length=98

 Score = 198 bits (506),  Expect = 5e-61, Method: Composition-based stats.
 Identities = 61/99 (62%), Positives = 71/99 (72%), Gaps = 1/99 (1%)

Query  138  PGAVLPVKNERITLNDGRKRIRLKVMSKGDRPIQVGSHYHFIETNPQLHFDRLRAYGYRL  197
            PG ++   +  I LN GR+ I L V + GDRPIQVGSHYHF E NP L FDR  AYG RL
Sbjct  1    PGEIIT-GDGDIELNAGRETITLTVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRL  59

Query  198  DIPAGTSVRFEPGDTKTVTLVEIAGNRIIKGGNSIASGK  236
            DIPAGT+VRFEPGDTKTVTLV I G R++ G N + +G 
Sbjct  60   DIPAGTAVRFEPGDTKTVTLVPIGGARVVYGFNGLVNGP  98


>CDD:459850 pfam00547, Urease_gamma, Urease, gamma subunit.  Urease is a 
nickel-binding enzyme that catalyzes the hydrolysis of urea 
to carbon dioxide and ammonia.
Length=99

 Score = 191 bits (487),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 59/100 (59%), Positives = 73/100 (73%), Gaps = 1/100 (1%)

Query  1   MHLIPKELDKLVISQLGFLAQRRLARGVRLNHAEAAALISSNLQELIRDGHYSVADLMSI  60
           MHL P+E DKL++   G LA+RRLARG++LN+ EA ALI+  L E  RDG  SVA+LM +
Sbjct  1   MHLTPREQDKLLLFVAGELARRRLARGLKLNYPEAVALIADELLEGARDGK-SVAELMQL  59

Query  61  GKTMLGRRHVLPSVVHTLVELQVEGTFPTGTYLVTVHHPI  100
           G+T+LGR  V+P V   L E+QVE TFP GT LVTVH PI
Sbjct  60  GRTVLGRDDVMPGVPEMLPEVQVEATFPDGTKLVTVHDPI  99



Lambda      K        H        a         alpha
   0.318    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 982227600


Query= TCONS_00006789

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.145    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0883    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00000737

Length=747
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425689 pfam00449, Urease_alpha, Urease alpha-subunit, N-termi...  241     7e-77
CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family. This f...  208     9e-62
CDD:459909 pfam00699, Urease_beta, Urease beta subunit. This subu...  198     3e-61
CDD:459850 pfam00547, Urease_gamma, Urease, gamma subunit. Urease...  190     3e-58


>CDD:425689 pfam00449, Urease_alpha, Urease alpha-subunit, N-terminal domain. 
 The N-terminal domain is a composite domain and plays 
a major trimer stabilizing role by contacting the catalytic 
domain of the symmetry related alpha-subunit.
Length=120

 Score = 241 bits (617),  Expect = 7e-77, Method: Composition-based stats.
 Identities = 79/120 (66%), Positives = 96/120 (80%), Gaps = 0/120 (0%)

Query  273  TMDREAYARMFGPTTGDLVRLGLTNLWVRVEKDCTVYGDECAFGGGKTLREGMGQSSERS  332
             + REAYA M+GPTTGD +RLG T+L++ VEKD TVYGDE  FGGGK +R+GMGQS  R+
Sbjct  1    KISREAYADMYGPTTGDRIRLGDTDLFIEVEKDLTVYGDEVKFGGGKVIRDGMGQSQGRT  60

Query  333  ATECLDTVITNALIIDWSGIYKADIGIKNGLISAIGKAGNPDMMDGVHPDMIVGSSTDVI  392
              + LD VITNALI+D++GI KADIGIK+G I  IGKAGNPD MDGV P M++G ST+VI
Sbjct  61   RDDALDLVITNALILDYTGIVKADIGIKDGRIVGIGKAGNPDTMDGVTPGMVIGPSTEVI  120


>CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family.  This family 
of enzymes are a a large metal dependent hydrolase superfamily. 
The family includes Adenine deaminase EC:3.5.4.2 that hydrolyzes 
adenine to form hypoxanthine and ammonia. Adenine deaminases 
reaction is important for adenine utilisation as a 
purine and also as a nitrogen source. This family also includes 
dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, 
EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 
6-phosphate + H2O <=> D-glucosamine 6-phosphate 
+ acetate. This family includes the catalytic domain 
of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are 
also included.
Length=334

 Score = 208 bits (532),  Expect = 9e-62, Method: Composition-based stats.
 Identities = 96/362 (27%), Positives = 138/362 (38%), Gaps = 65/362 (18%)

Query  398  IVTAGGFDTHIHF---------ICPQQVDEALASGITTFLGGGTGPSTGTNATTCTPGPT  448
            IV  G  D H+H          + P+   EAL  GITT L  GT       ATT T    
Sbjct  1    IVLPGLIDAHVHLEMGLLRGIPVPPEFAYEALRLGITTMLKSGTTTVLDMGATTSTG---  57

Query  449  LMRQMIQACDGLPINVGITGK-------GNDSGGKSIEEQIRAGA------------AGL  489
             +  +++A + LP+ +   G        G   G K++ E+++AGA             GL
Sbjct  58   -IEALLEAAEELPLGLRFLGPGCSLDTDGELEGRKALREKLKAGAEFIKGMADGVVFVGL  116

Query  490  KLHEDWGSTPAAIDTCLDMCDKFDVQCMIHTDTLNESGFVEQTVKSFKNRTIHTYHTEGA  549
              H     +   +   L+   K+ +   IH   L   G VE  + +F     H  H E A
Sbjct  117  APHGAPTFSDDELKAALEEAKKYGLPVAIHA--LETKGEVEDAIAAFGGGIEHGTHLEVA  174

Query  550  GGGHAPDIISVVEHPNVLPSSTNPTRPFTMNTLDEHLDMLMVCHHLSKNIPEDVAFAESR  609
              G   DII ++    V  S T        N L EHL    V H           F+ S+
Sbjct  175  ESGGLLDIIKLILAHGVHLSPT------EANLLAEHLKGAGVAH---------CPFSNSK  219

Query  610  IRAETIAAEDVLHDLGAISMMSSDSQAMGRCGEVILRTWNTAHKNKAQRGPLKEDEGTGA  669
            +R+  IA    L D G    + +D    G    ++          + Q  P         
Sbjct  220  LRSGRIALRKALED-GVKVGLGTDGAGSGNSLNMLEEL---RLALELQFDP--------E  267

Query  670  DNFRVKRYISKYTINPAIAQGMSHLIGSVEVGKLADLVIWH----PSTFGTKPAQVLKSG  725
                    +   TINPA A G+   +GS+EVGK ADLV+       + FG KP   +K  
Sbjct  268  GGLSPLEALRMATINPAKALGLDDKVGSIEVGKDADLVVVDLDPLAAFFGLKPDGNVKKV  327

Query  726  MI  727
            ++
Sbjct  328  IV  329


>CDD:459909 pfam00699, Urease_beta, Urease beta subunit.  This subunit is 
known as alpha in Heliobacter.
Length=98

 Score = 198 bits (507),  Expect = 3e-61, Method: Composition-based stats.
 Identities = 61/99 (62%), Positives = 71/99 (72%), Gaps = 1/99 (1%)

Query  138  PGAVLPVKNERITLNDGRKRIRLKVMSKGDRPIQVGSHYHFIETNPQLHFDRLRAYGYRL  197
            PG ++   +  I LN GR+ I L V + GDRPIQVGSHYHF E NP L FDR  AYG RL
Sbjct  1    PGEIIT-GDGDIELNAGRETITLTVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRL  59

Query  198  DIPAGTSVRFEPGDTKTVTLVEIAGNRIIKGGNSIASGK  236
            DIPAGT+VRFEPGDTKTVTLV I G R++ G N + +G 
Sbjct  60   DIPAGTAVRFEPGDTKTVTLVPIGGARVVYGFNGLVNGP  98


>CDD:459850 pfam00547, Urease_gamma, Urease, gamma subunit.  Urease is a 
nickel-binding enzyme that catalyzes the hydrolysis of urea 
to carbon dioxide and ammonia.
Length=99

 Score = 190 bits (486),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 59/100 (59%), Positives = 73/100 (73%), Gaps = 1/100 (1%)

Query  1   MHLIPKELDKLVISQLGFLAQRRLARGVRLNHAEAAALISSNLQELIRDGHYSVADLMSI  60
           MHL P+E DKL++   G LA+RRLARG++LN+ EA ALI+  L E  RDG  SVA+LM +
Sbjct  1   MHLTPREQDKLLLFVAGELARRRLARGLKLNYPEAVALIADELLEGARDGK-SVAELMQL  59

Query  61  GKTMLGRRHVLPSVVHTLVELQVEGTFPTGTYLVTVHHPI  100
           G+T+LGR  V+P V   L E+QVE TFP GT LVTVH PI
Sbjct  60  GRTVLGRDDVMPGVPEMLPEVQVEATFPDGTKLVTVHDPI  99



Lambda      K        H        a         alpha
   0.318    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 950214256


Query= TCONS_00000738

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00000739

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425689 pfam00449, Urease_alpha, Urease alpha-subunit, N-termi...  237     3e-77
CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family. This f...  210     1e-63


>CDD:425689 pfam00449, Urease_alpha, Urease alpha-subunit, N-terminal domain. 
 The N-terminal domain is a composite domain and plays 
a major trimer stabilizing role by contacting the catalytic 
domain of the symmetry related alpha-subunit.
Length=120

 Score = 237 bits (608),  Expect = 3e-77, Method: Composition-based stats.
 Identities = 79/119 (66%), Positives = 96/119 (81%), Gaps = 0/119 (0%)

Query  1    MDREAYARMFGPTTGDLVRLGLTNLWVRVEKDCTVYGDECAFGGGKTLREGMGQSSERSA  60
            + REAYA M+GPTTGD +RLG T+L++ VEKD TVYGDE  FGGGK +R+GMGQS  R+ 
Sbjct  2    ISREAYADMYGPTTGDRIRLGDTDLFIEVEKDLTVYGDEVKFGGGKVIRDGMGQSQGRTR  61

Query  61   TECLDTVITNALIIDWSGIYKADIGIKNGLISAIGKAGNPDMMDGVHPDMIVGSSTDVI  119
             + LD VITNALI+D++GI KADIGIK+G I  IGKAGNPD MDGV P M++G ST+VI
Sbjct  62   DDALDLVITNALILDYTGIVKADIGIKDGRIVGIGKAGNPDTMDGVTPGMVIGPSTEVI  120


>CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family.  This family 
of enzymes are a a large metal dependent hydrolase superfamily. 
The family includes Adenine deaminase EC:3.5.4.2 that hydrolyzes 
adenine to form hypoxanthine and ammonia. Adenine deaminases 
reaction is important for adenine utilisation as a 
purine and also as a nitrogen source. This family also includes 
dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, 
EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 
6-phosphate + H2O <=> D-glucosamine 6-phosphate 
+ acetate. This family includes the catalytic domain 
of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are 
also included.
Length=334

 Score = 210 bits (535),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 96/362 (27%), Positives = 138/362 (38%), Gaps = 65/362 (18%)

Query  125  IVTAGGFDTHIHF---------ICPQQVDEALASGITTFLGGGTGPSTGTNATTCTPGPT  175
            IV  G  D H+H          + P+   EAL  GITT L  GT       ATT T    
Sbjct  1    IVLPGLIDAHVHLEMGLLRGIPVPPEFAYEALRLGITTMLKSGTTTVLDMGATTSTG---  57

Query  176  LMRQMIQACDGLPINVGITGK-------GNDSGGKSIEEQIRAGA------------AGL  216
             +  +++A + LP+ +   G        G   G K++ E+++AGA             GL
Sbjct  58   -IEALLEAAEELPLGLRFLGPGCSLDTDGELEGRKALREKLKAGAEFIKGMADGVVFVGL  116

Query  217  KLHEDWGSTPAAIDTCLDMCDKFDVQCMIHTDTLNESGFVEQTVKSFKNRTIHTYHTEGA  276
              H     +   +   L+   K+ +   IH   L   G VE  + +F     H  H E A
Sbjct  117  APHGAPTFSDDELKAALEEAKKYGLPVAIHA--LETKGEVEDAIAAFGGGIEHGTHLEVA  174

Query  277  GGGHAPDIISVVEHPNVLPSSTNPTRPFTMNTLDEHLDMLMVCHHLSKNIPEDVAFAESR  336
              G   DII ++    V  S T        N L EHL    V H           F+ S+
Sbjct  175  ESGGLLDIIKLILAHGVHLSPT------EANLLAEHLKGAGVAH---------CPFSNSK  219

Query  337  IRAETIAAEDVLHDLGAISMMSSDSQAMGRCGEVILRTWNTAHKNKAQRGPLKEDEGTGA  396
            +R+  IA    L D G    + +D    G    ++          + Q  P         
Sbjct  220  LRSGRIALRKALED-GVKVGLGTDGAGSGNSLNMLEEL---RLALELQFDP--------E  267

Query  397  DNFRVKRYISKYTINPAIAQGMSHLIGSVEVGKLADLVIWH----PSTFGTKPAQVLKSG  452
                    +   TINPA A G+   +GS+EVGK ADLV+       + FG KP   +K  
Sbjct  268  GGLSPLEALRMATINPAKALGLDDKVGSIEVGKDADLVVVDLDPLAAFFGLKPDGNVKKV  327

Query  453  MI  454
            ++
Sbjct  328  IV  329



Lambda      K        H        a         alpha
   0.317    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 706864444


Query= TCONS_00000740

Length=908
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425689 pfam00449, Urease_alpha, Urease alpha-subunit, N-termi...  242     3e-76
CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family. This f...  210     1e-61
CDD:459909 pfam00699, Urease_beta, Urease beta subunit. This subu...  198     1e-60
CDD:459850 pfam00547, Urease_gamma, Urease, gamma subunit. Urease...  106     8e-28


>CDD:425689 pfam00449, Urease_alpha, Urease alpha-subunit, N-terminal domain. 
 The N-terminal domain is a composite domain and plays 
a major trimer stabilizing role by contacting the catalytic 
domain of the symmetry related alpha-subunit.
Length=120

 Score = 242 bits (620),  Expect = 3e-76, Method: Composition-based stats.
 Identities = 79/120 (66%), Positives = 96/120 (80%), Gaps = 0/120 (0%)

Query  343  TMDREAYARMFGPTTGDLVRLGLTNLWVRVEKDCTVYGDECAFGGGKTLREGMGQSSERS  402
             + REAYA M+GPTTGD +RLG T+L++ VEKD TVYGDE  FGGGK +R+GMGQS  R+
Sbjct  1    KISREAYADMYGPTTGDRIRLGDTDLFIEVEKDLTVYGDEVKFGGGKVIRDGMGQSQGRT  60

Query  403  ATECLDTVITNALIIDWSGIYKADIGIKNGLISAIGKAGNPDMMDGVHPDMIVGSSTDVI  462
              + LD VITNALI+D++GI KADIGIK+G I  IGKAGNPD MDGV P M++G ST+VI
Sbjct  61   RDDALDLVITNALILDYTGIVKADIGIKDGRIVGIGKAGNPDTMDGVTPGMVIGPSTEVI  120


>CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family.  This family 
of enzymes are a a large metal dependent hydrolase superfamily. 
The family includes Adenine deaminase EC:3.5.4.2 that hydrolyzes 
adenine to form hypoxanthine and ammonia. Adenine deaminases 
reaction is important for adenine utilisation as a 
purine and also as a nitrogen source. This family also includes 
dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, 
EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 
6-phosphate + H2O <=> D-glucosamine 6-phosphate 
+ acetate. This family includes the catalytic domain 
of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are 
also included.
Length=334

 Score = 210 bits (537),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 96/362 (27%), Positives = 138/362 (38%), Gaps = 65/362 (18%)

Query  468  IVTAGGFDTHIHF---------ICPQQVDEALASGITTFLGGGTGPSTGTNATTCTPGPT  518
            IV  G  D H+H          + P+   EAL  GITT L  GT       ATT T    
Sbjct  1    IVLPGLIDAHVHLEMGLLRGIPVPPEFAYEALRLGITTMLKSGTTTVLDMGATTSTG---  57

Query  519  LMRQMIQACDGLPINVGITGK-------GNDSGGKSIEEQIRAGA------------AGL  559
             +  +++A + LP+ +   G        G   G K++ E+++AGA             GL
Sbjct  58   -IEALLEAAEELPLGLRFLGPGCSLDTDGELEGRKALREKLKAGAEFIKGMADGVVFVGL  116

Query  560  KLHEDWGSTPAAIDTCLDMCDKFDVQCMIHTDTLNESGFVEQTVKSFKNRTIHTYHTEGA  619
              H     +   +   L+   K+ +   IH   L   G VE  + +F     H  H E A
Sbjct  117  APHGAPTFSDDELKAALEEAKKYGLPVAIHA--LETKGEVEDAIAAFGGGIEHGTHLEVA  174

Query  620  GGGHAPDIISVVEHPNVLPSSTNPTRPFTMNTLDEHLDMLMVCHHLSKNIPEDVAFAESR  679
              G   DII ++    V  S T        N L EHL    V H           F+ S+
Sbjct  175  ESGGLLDIIKLILAHGVHLSPT------EANLLAEHLKGAGVAH---------CPFSNSK  219

Query  680  IRAETIAAEDVLHDLGAISMMSSDSQAMGRCGEVILRTWNTAHKNKAQRGPLKEDEGTGA  739
            +R+  IA    L D G    + +D    G    ++          + Q  P         
Sbjct  220  LRSGRIALRKALED-GVKVGLGTDGAGSGNSLNMLEEL---RLALELQFDP--------E  267

Query  740  DNFRVKRYISKYTINPAIAQGMSHLIGSVEVGKLADLVIWH----PSTFGTKPAQVLKSG  795
                    +   TINPA A G+   +GS+EVGK ADLV+       + FG KP   +K  
Sbjct  268  GGLSPLEALRMATINPAKALGLDDKVGSIEVGKDADLVVVDLDPLAAFFGLKPDGNVKKV  327

Query  796  MI  797
            ++
Sbjct  328  IV  329


>CDD:459909 pfam00699, Urease_beta, Urease beta subunit.  This subunit is 
known as alpha in Heliobacter.
Length=98

 Score = 198 bits (507),  Expect = 1e-60, Method: Composition-based stats.
 Identities = 61/99 (62%), Positives = 71/99 (72%), Gaps = 1/99 (1%)

Query  208  PGAVLPVKNERITLNDGRKRIRLKVMSKGDRPIQVGSHYHFIETNPQLHFDRLRAYGYRL  267
            PG ++   +  I LN GR+ I L V + GDRPIQVGSHYHF E NP L FDR  AYG RL
Sbjct  1    PGEIIT-GDGDIELNAGRETITLTVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRL  59

Query  268  DIPAGTSVRFEPGDTKTVTLVEIAGNRIIKGGNSIASGK  306
            DIPAGT+VRFEPGDTKTVTLV I G R++ G N + +G 
Sbjct  60   DIPAGTAVRFEPGDTKTVTLVPIGGARVVYGFNGLVNGP  98


>CDD:459850 pfam00547, Urease_gamma, Urease, gamma subunit.  Urease is a 
nickel-binding enzyme that catalyzes the hydrolysis of urea 
to carbon dioxide and ammonia.
Length=99

 Score = 106 bits (267),  Expect = 8e-28, Method: Composition-based stats.
 Identities = 33/57 (58%), Positives = 40/57 (70%), Gaps = 1/57 (2%)

Query  114  QQLIRDGHYSVADLMSIGKTMLGRRHVLPSVVHTLVELQVEGTFPTGTYLVTVHHPI  170
             +  RDG  SVA+LM +G+T+LGR  V+P V   L E+QVE TFP GT LVTVH PI
Sbjct  44   LEGARDGK-SVAELMQLGRTVLGRDDVMPGVPEMLPEVQVEATFPDGTKLVTVHDPI  99



Lambda      K        H        a         alpha
   0.318    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1167072882


Query= TCONS_00006792

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00000742

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:368796 pfam06218, NPR2, Nitrogen permease regulator 2. This f...  176     1e-54


>CDD:368796 pfam06218, NPR2, Nitrogen permease regulator 2.  This family 
of regulators are involved in post-translational control of 
nitrogen permease.
Length=439

 Score = 176 bits (447),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 68/177 (38%), Positives = 97/177 (55%), Gaps = 21/177 (12%)

Query  2    IRAIFYSKFDTQEGPKVVHQVPDGAIVPSATAPSQPLFLTFSDISFFVIPRQELCGNLIQ  61
            I AIFY+ F   EG K+VHQVP G+IVPS+ +        F  +  ++IP+ +LC  LI 
Sbjct  3    ILAIFYAVFHPTEGTKIVHQVPPGSIVPSSESNDVEALFDFDTVKNYIIPKPQLCNRLIS  62

Query  62   VCTNGYRILGYPICMKSPRYDRNEFIFNFCLVLAEEE-DFSSYKSVVQKLADLMHGLEEQ  120
               N Y++LGYP+ +++ +Y RN F FNFC V   +E D + Y+  V+++  +   LEEQ
Sbjct  63   FKINRYKVLGYPVNIENEKYSRNSFTFNFCFVFGYDESDTTPYEPAVRRMGRMFRVLEEQ  122

Query  121  NGFLS---------------RDHSKSGEG-----KVYSLCETLMEDLNNYCECMIPI  157
            N FLS                D + +  G      + SL E + EDLNNY EC IP+
Sbjct  123  NFFLSKEDKAVWFFKDAGLDNDATFNTPGGSKLSSIESLIEQIFEDLNNYSECCIPL  179



Lambda      K        H        a         alpha
   0.322    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00006793

Length=81
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:368796 pfam06218, NPR2, Nitrogen permease regulator 2. This f...  91.8    3e-24


>CDD:368796 pfam06218, NPR2, Nitrogen permease regulator 2.  This family 
of regulators are involved in post-translational control of 
nitrogen permease.
Length=439

 Score = 91.8 bits (228),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 21/102 (21%)

Query  1    MKSPRYDRNEFIFNFCLVLAEEE-DFSSYKSVVQKLADLMHGLEEQNGFLS---------  50
            +++ +Y RN F FNFC V   +E D + Y+  V+++  +   LEEQN FLS         
Sbjct  77   IENEKYSRNSFTFNFCFVFGYDESDTTPYEPAVRRMGRMFRVLEEQNFFLSKEDKAVWFF  136

Query  51   ------RDHSKSGEG-----KVYSLCETLMEDLNNYCECMIP  81
                   D + +  G      + SL E + EDLNNY EC IP
Sbjct  137  KDAGLDNDATFNTPGGSKLSSIESLIEQIFEDLNNYSECCIP  178



Lambda      K        H        a         alpha
   0.319    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00006794

Length=303


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00000743

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:368796 pfam06218, NPR2, Nitrogen permease regulator 2. This f...  176     1e-54


>CDD:368796 pfam06218, NPR2, Nitrogen permease regulator 2.  This family 
of regulators are involved in post-translational control of 
nitrogen permease.
Length=439

 Score = 176 bits (447),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 68/177 (38%), Positives = 97/177 (55%), Gaps = 21/177 (12%)

Query  2    IRAIFYSKFDTQEGPKVVHQVPDGAIVPSATAPSQPLFLTFSDISFFVIPRQELCGNLIQ  61
            I AIFY+ F   EG K+VHQVP G+IVPS+ +        F  +  ++IP+ +LC  LI 
Sbjct  3    ILAIFYAVFHPTEGTKIVHQVPPGSIVPSSESNDVEALFDFDTVKNYIIPKPQLCNRLIS  62

Query  62   VCTNGYRILGYPICMKSPRYDRNEFIFNFCLVLAEEE-DFSSYKSVVQKLADLMHGLEEQ  120
               N Y++LGYP+ +++ +Y RN F FNFC V   +E D + Y+  V+++  +   LEEQ
Sbjct  63   FKINRYKVLGYPVNIENEKYSRNSFTFNFCFVFGYDESDTTPYEPAVRRMGRMFRVLEEQ  122

Query  121  NGFLS---------------RDHSKSGEG-----KVYSLCETLMEDLNNYCECMIPI  157
            N FLS                D + +  G      + SL E + EDLNNY EC IP+
Sbjct  123  NFFLSKEDKAVWFFKDAGLDNDATFNTPGGSKLSSIESLIEQIFEDLNNYSECCIPL  179



Lambda      K        H        a         alpha
   0.322    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00000744

Length=303


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00000745

Length=584
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:368796 pfam06218, NPR2, Nitrogen permease regulator 2. This f...  405     1e-137


>CDD:368796 pfam06218, NPR2, Nitrogen permease regulator 2.  This family 
of regulators are involved in post-translational control of 
nitrogen permease.
Length=439

 Score = 405 bits (1043),  Expect = 1e-137, Method: Composition-based stats.
 Identities = 170/474 (36%), Positives = 238/474 (50%), Gaps = 94/474 (20%)

Query  2    IRAIFYSKFDTQEGPKVVHQVPDGAIVPSATAPSQPLFLTFSDISFFVIPRQELCGNLIQ  61
            I AIFY+ F   EG K+VHQVP G+IVPS+ +        F  +  ++IP+ +LC  LI 
Sbjct  3    ILAIFYAVFHPTEGTKIVHQVPPGSIVPSSESNDVEALFDFDTVKNYIIPKPQLCNRLIS  62

Query  62   VCTNGYRILGYPICMKSPRYDRNEFIFNFCLVLAEEE-DFSSYKSVVQKLADLMHGLEEQ  120
               N Y++LGYP+ +++ +Y RN F FNFC V   +E D + Y+  V+++  +   LEEQ
Sbjct  63   FKINRYKVLGYPVNIENEKYSRNSFTFNFCFVFGYDESDTTPYEPAVRRMGRMFRVLEEQ  122

Query  121  NGFLS---------------RDHSKSGEG-----KVYSLCETLMEDLNNYCECMIPIDEL  160
            N FLS                D + +  G      + SL E + EDLNNY EC IP+D+ 
Sbjct  123  NFFLSKEDKAVWFFKDAGLDNDATFNTPGGSKLSSIESLIEQIFEDLNNYSECCIPLDDS  182

Query  161  NTLNIKLFPVYPAPPQVRAWQVPLFTVRYQAFMDENWDLTMQRIVPHINGVNSIRIISIL  220
            N++++KLFP+ P PP ++A QVP+ TV+  + +D NWD TM +I+P+ING+NS+R I+IL
Sbjct  183  NSVDLKLFPLLPPPPNIKAHQVPILTVKLSSLVDVNWDPTMVKILPYINGINSVRRIAIL  242

Query  221  ADTDFSLTCRAIRHLLYYGCLFLLDIFSFSAIYAPTAQFSSTIACDEGMQRECARYVNTL  280
            AD D+SLT + I+HL+YY C+ LLDIF FS IYAPT      +     +  EC  YV   
Sbjct  243  ADADYSLTKQCIQHLMYYKCIELLDIFQFSNIYAPTNHIGDFLKDQTEIADECQAYVVI-  301

Query  281  FAPSLIHGSASAATAPSASTSALSPAAHGLTNAHVSGIPGNLVGLSKHDPDSVWPPVGDY  340
                   GS S +   S S  + SP       A  S  P                P    
Sbjct  302  --NEPNLGSNSVSPYSSTSYISKSPKTTTAGGADGSEEP-------------TRVPSKTT  346

Query  341  RDRRSTSRTPSPSSSYRSSTTTPSNSTILPDDHDPTQPPPPPEVVDGVGIVELYASLKQG  400
                                                             +  LY SL QG
Sbjct  347  -------------------------------------------------LFYLYRSLNQG  357

Query  401  QSVRQWYAQNSRKLAYIDIRRFITFGIIKGFLYRVHKYAYATGQPAPQLKSSHH  454
            Q++++WY Q+ + L  ID+RRFI FG+I+GF+YRVHKY        P L S+  
Sbjct  358  QTLKEWYLQHRKLLNGIDVRRFIQFGVIRGFIYRVHKY--------PILNSNPG  403



Lambda      K        H        a         alpha
   0.319    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 735258576


Query= TCONS_00000746

Length=206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:368796 pfam06218, NPR2, Nitrogen permease regulator 2. This f...  242     1e-79


>CDD:368796 pfam06218, NPR2, Nitrogen permease regulator 2.  This family 
of regulators are involved in post-translational control of 
nitrogen permease.
Length=439

 Score = 242 bits (620),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 89/224 (40%), Positives = 132/224 (59%), Gaps = 21/224 (9%)

Query  2    IRAIFYSKFDTQEGPKVVHQVPDGAIVPSATAPSQPLFLTFSDISFFVIPRQELCGNLIQ  61
            I AIFY+ F   EG K+VHQVP G+IVPS+ +        F  +  ++IP+ +LC  LI 
Sbjct  3    ILAIFYAVFHPTEGTKIVHQVPPGSIVPSSESNDVEALFDFDTVKNYIIPKPQLCNRLIS  62

Query  62   VCTNGYRILGYPICMKSPRYDRNEFIFNFCLVLAEEE-DFSSYKSVVQKLADLMHGLEEQ  120
               N Y++LGYP+ +++ +Y RN F FNFC V   +E D + Y+  V+++  +   LEEQ
Sbjct  63   FKINRYKVLGYPVNIENEKYSRNSFTFNFCFVFGYDESDTTPYEPAVRRMGRMFRVLEEQ  122

Query  121  NGFLS---------------RDHSKSGEG-----KVYSLCETLMEDLNNYCECMIPIDEL  160
            N FLS                D + +  G      + SL E + EDLNNY EC IP+D+ 
Sbjct  123  NFFLSKEDKAVWFFKDAGLDNDATFNTPGGSKLSSIESLIEQIFEDLNNYSECCIPLDDS  182

Query  161  NTLNIKLFPVYPAPPQVRAWQVPLFTVRYQAFMDENWDLTMQRV  204
            N++++KLFP+ P PP ++A QVP+ TV+  + +D NWD TM ++
Sbjct  183  NSVDLKLFPLLPPPPNIKAHQVPILTVKLSSLVDVNWDPTMVKI  226



Lambda      K        H        a         alpha
   0.324    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00000747

Length=584
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:368796 pfam06218, NPR2, Nitrogen permease regulator 2. This f...  405     1e-137


>CDD:368796 pfam06218, NPR2, Nitrogen permease regulator 2.  This family 
of regulators are involved in post-translational control of 
nitrogen permease.
Length=439

 Score = 405 bits (1043),  Expect = 1e-137, Method: Composition-based stats.
 Identities = 170/474 (36%), Positives = 238/474 (50%), Gaps = 94/474 (20%)

Query  2    IRAIFYSKFDTQEGPKVVHQVPDGAIVPSATAPSQPLFLTFSDISFFVIPRQELCGNLIQ  61
            I AIFY+ F   EG K+VHQVP G+IVPS+ +        F  +  ++IP+ +LC  LI 
Sbjct  3    ILAIFYAVFHPTEGTKIVHQVPPGSIVPSSESNDVEALFDFDTVKNYIIPKPQLCNRLIS  62

Query  62   VCTNGYRILGYPICMKSPRYDRNEFIFNFCLVLAEEE-DFSSYKSVVQKLADLMHGLEEQ  120
               N Y++LGYP+ +++ +Y RN F FNFC V   +E D + Y+  V+++  +   LEEQ
Sbjct  63   FKINRYKVLGYPVNIENEKYSRNSFTFNFCFVFGYDESDTTPYEPAVRRMGRMFRVLEEQ  122

Query  121  NGFLS---------------RDHSKSGEG-----KVYSLCETLMEDLNNYCECMIPIDEL  160
            N FLS                D + +  G      + SL E + EDLNNY EC IP+D+ 
Sbjct  123  NFFLSKEDKAVWFFKDAGLDNDATFNTPGGSKLSSIESLIEQIFEDLNNYSECCIPLDDS  182

Query  161  NTLNIKLFPVYPAPPQVRAWQVPLFTVRYQAFMDENWDLTMQRIVPHINGVNSIRIISIL  220
            N++++KLFP+ P PP ++A QVP+ TV+  + +D NWD TM +I+P+ING+NS+R I+IL
Sbjct  183  NSVDLKLFPLLPPPPNIKAHQVPILTVKLSSLVDVNWDPTMVKILPYINGINSVRRIAIL  242

Query  221  ADTDFSLTCRAIRHLLYYGCLFLLDIFSFSAIYAPTAQFSSTIACDEGMQRECARYVNTL  280
            AD D+SLT + I+HL+YY C+ LLDIF FS IYAPT      +     +  EC  YV   
Sbjct  243  ADADYSLTKQCIQHLMYYKCIELLDIFQFSNIYAPTNHIGDFLKDQTEIADECQAYVVI-  301

Query  281  FAPSLIHGSASAATAPSASTSALSPAAHGLTNAHVSGIPGNLVGLSKHDPDSVWPPVGDY  340
                   GS S +   S S  + SP       A  S  P                P    
Sbjct  302  --NEPNLGSNSVSPYSSTSYISKSPKTTTAGGADGSEEP-------------TRVPSKTT  346

Query  341  RDRRSTSRTPSPSSSYRSSTTTPSNSTILPDDHDPTQPPPPPEVVDGVGIVELYASLKQG  400
                                                             +  LY SL QG
Sbjct  347  -------------------------------------------------LFYLYRSLNQG  357

Query  401  QSVRQWYAQNSRKLAYIDIRRFITFGIIKGFLYRVHKYAYATGQPAPQLKSSHH  454
            Q++++WY Q+ + L  ID+RRFI FG+I+GF+YRVHKY        P L S+  
Sbjct  358  QTLKEWYLQHRKLLNGIDVRRFIQFGVIRGFIYRVHKY--------PILNSNPG  403



Lambda      K        H        a         alpha
   0.319    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 735258576


Query= TCONS_00006795

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00000749

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   59.3    3e-12


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 59.3 bits (144),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 22/46 (48%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query  373  PTCAICLDDFVSGITIVRELPCGHIFHPSCIDVSLTQISSLCPLCK  418
              C ICL++F  G  +V  LPCGH FH  C+D  L + S+ CPLC+
Sbjct  1    DECPICLEEFEEGDKVVV-LPCGHHFHRECLDKWL-RSSNTCPLCR  44



Lambda      K        H        a         alpha
   0.317    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00006796

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   55.5    3e-11


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 55.5 bits (134),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 22/46 (48%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query  205  PTCAICLDDFVSGITIVRELPCGHIFHPSCIDVSLTQISSLCPLCK  250
              C ICL++F  G  +V  LPCGH FH  C+D  L + S+ CPLC+
Sbjct  1    DECPICLEEFEEGDKVVV-LPCGHHFHRECLDKWL-RSSNTCPLCR  44



Lambda      K        H        a         alpha
   0.320    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00000750

Length=442
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   57.8    9e-12


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 57.8 bits (140),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 22/46 (48%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query  370  PTCAICLDDFVSGITIVRELPCGHIFHPSCIDVSLTQISSLCPLCK  415
              C ICL++F  G  +V  LPCGH FH  C+D  L + S+ CPLC+
Sbjct  1    DECPICLEEFEEGDKVVV-LPCGHHFHRECLDKWL-RSSNTCPLCR  44



Lambda      K        H        a         alpha
   0.318    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 539863808


Query= TCONS_00000751

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   55.5    3e-11


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 55.5 bits (134),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 22/46 (48%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query  205  PTCAICLDDFVSGITIVRELPCGHIFHPSCIDVSLTQISSLCPLCK  250
              C ICL++F  G  +V  LPCGH FH  C+D  L + S+ CPLC+
Sbjct  1    DECPICLEEFEEGDKVVV-LPCGHHFHRECLDKWL-RSSNTCPLCR  44



Lambda      K        H        a         alpha
   0.320    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00000752

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   54.3    6e-11


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 54.3 bits (131),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 22/46 (48%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query  205  PTCAICLDDFVSGITIVRELPCGHIFHPSCIDVSLTQISSLCPLCK  250
              C ICL++F  G  +V  LPCGH FH  C+D  L + S+ CPLC+
Sbjct  1    DECPICLEEFEEGDKVVV-LPCGHHFHRECLDKWL-RSSNTCPLCR  44



Lambda      K        H        a         alpha
   0.321    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00000753

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   55.5    3e-11


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 55.5 bits (134),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 22/46 (48%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query  205  PTCAICLDDFVSGITIVRELPCGHIFHPSCIDVSLTQISSLCPLCK  250
              C ICL++F  G  +V  LPCGH FH  C+D  L + S+ CPLC+
Sbjct  1    DECPICLEEFEEGDKVVV-LPCGHHFHRECLDKWL-RSSNTCPLCR  44



Lambda      K        H        a         alpha
   0.320    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00000754

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease. This f...  169     5e-51
CDD:460850 pfam03221, HTH_Tnp_Tc5, Tc5 transposase DNA-binding do...  58.8    7e-12


>CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease.  This family 
of proteins are related to pfam00665 and are probably endonucleases 
of the DDE superfamily. Transposase proteins are necessary 
for efficient DNA transposition. This domain is a member 
of the DDE superfamily, which contain three carboxylate 
residues that are believed to be responsible for coordinating 
metal ions needed for catalysis. The catalytic activity of 
this enzyme involves DNA cleavage at a specific site followed 
by a strand transfer reaction. Interestingly this family 
also includes the CENP-B protein. This domain in that protein 
appears to have lost the metal binding residues and is unlikely 
to have endonuclease activity. Centromere Protein B (CENP-B) 
is a DNA-binding protein localized to the centromere.
Length=177

 Score = 169 bits (431),  Expect = 5e-51, Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 77/179 (43%), Gaps = 9/179 (5%)

Query  139  NREWVTSIECINSTGWVLPPCIIFKGKVHIEGWYQDTALPADWRIEVSENGWTTDQIGLR  198
                   + C  +    LPP +I KGK       + T  P     + +   W T  I   
Sbjct  1    KERLTVMLCCNAAGSEKLPPLVIGKGKNPRAFKNEKTPKPLPVEYKSNGKAWMTTSIFEE  60

Query  199  WLQKVFIPATTSRTTGRYRLLILDGHGSHLTPQFDQICTENDIIPICMPAHSSHLLQPLD  258
            WLQK F P     + GR  LL+LDG GSH T +  + C   +I  + +PA+S+ +LQPLD
Sbjct  61   WLQKWFDP-RMRESPGRKVLLLLDGSGSHPTVELIRSCGLQNIFLVFLPANSTSILQPLD  119

Query  259  VGCFSPLKRAYGRLIEDKMRLGFNHIDKF-------DFLEAYPQARTAIFSADNIKSGF  310
             G  S  K  Y R     +  G N +          D L+   +A  A+ S   I SGF
Sbjct  120  QGVVSTFKANYRRQWLQYLLAGNNLLSPPWKKLTLLDALKWIAKAWNAV-SPSTITSGF  177


>CDD:460850 pfam03221, HTH_Tnp_Tc5, Tc5 transposase DNA-binding domain.  

Length=63

 Score = 58.8 bits (143),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query  2   TQNEEDSLIRWILSMDQRGAAPRPSHVREMANILLAQRG--STPTQTVGEKWVYNFINRH  59
             + E +L  WIL +  RG       +RE A  L         P     + W+  F  RH
Sbjct  1   YPDLEKALYEWILQLRARGIPITGPMIREKALELAQLAADLGEPDFKASKGWLDRFKKRH  60

Query  60  D  60
            
Sbjct  61  G  61



Lambda      K        H        a         alpha
   0.320    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00000755

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00000756

Length=556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease. This f...  169     2e-50
CDD:460850 pfam03221, HTH_Tnp_Tc5, Tc5 transposase DNA-binding do...  58.8    8e-12


>CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease.  This family 
of proteins are related to pfam00665 and are probably endonucleases 
of the DDE superfamily. Transposase proteins are necessary 
for efficient DNA transposition. This domain is a member 
of the DDE superfamily, which contain three carboxylate 
residues that are believed to be responsible for coordinating 
metal ions needed for catalysis. The catalytic activity of 
this enzyme involves DNA cleavage at a specific site followed 
by a strand transfer reaction. Interestingly this family 
also includes the CENP-B protein. This domain in that protein 
appears to have lost the metal binding residues and is unlikely 
to have endonuclease activity. Centromere Protein B (CENP-B) 
is a DNA-binding protein localized to the centromere.
Length=177

 Score = 169 bits (431),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 77/179 (43%), Gaps = 9/179 (5%)

Query  206  NREWVTSIECINSTGWVLPPCIIFKGKVHIEGWYQDTALPADWRIEVSENGWTTDQIGLR  265
                   + C  +    LPP +I KGK       + T  P     + +   W T  I   
Sbjct  1    KERLTVMLCCNAAGSEKLPPLVIGKGKNPRAFKNEKTPKPLPVEYKSNGKAWMTTSIFEE  60

Query  266  WLQKVFIPATTSRTTGRYRLLILDGHGSHLTPQFDQICTENDIIPICMPAHSSHLLQPLD  325
            WLQK F P     + GR  LL+LDG GSH T +  + C   +I  + +PA+S+ +LQPLD
Sbjct  61   WLQKWFDP-RMRESPGRKVLLLLDGSGSHPTVELIRSCGLQNIFLVFLPANSTSILQPLD  119

Query  326  VGCFSPLKRAYGRLIEDKMRLGFNHIDKF-------DFLEAYPQARTAIFSADNIKSGF  377
             G  S  K  Y R     +  G N +          D L+   +A  A+ S   I SGF
Sbjct  120  QGVVSTFKANYRRQWLQYLLAGNNLLSPPWKKLTLLDALKWIAKAWNAV-SPSTITSGF  177


>CDD:460850 pfam03221, HTH_Tnp_Tc5, Tc5 transposase DNA-binding domain.  

Length=63

 Score = 58.8 bits (143),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query  69   TQNEEDSLIRWILSMDQRGAAPRPSHVREMANILLAQRG--STPTQTVGEKWVYNFINRH  126
              + E +L  WIL +  RG       +RE A  L         P     + W+  F  RH
Sbjct  1    YPDLEKALYEWILQLRARGIPITGPMIREKALELAQLAADLGEPDFKASKGWLDRFKKRH  60

Query  127  D  127
             
Sbjct  61   G  61



Lambda      K        H        a         alpha
   0.320    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 693414592


Query= TCONS_00006797

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461321 pfam04468, PSP1, PSP1 C-terminal conserved region. Thi...  64.7    2e-13


>CDD:461321 pfam04468, PSP1, PSP1 C-terminal conserved region.  This region 
is present in both eukaryotes and eubacteria. The yeast PSP1 
protein is involved in suppressing mutations in the DNA 
polymerase alpha subunit in yeast.
Length=86

 Score = 64.7 bits (159),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 0/48 (0%)

Query  665  KLIKRLAQNHEILTLRDKEGNEAKAKRVCQQKVAEHRLNMEILDAEFQ  712
            K I R A   ++  L +    E +A  +C++K+ EH L M+++D E+Q
Sbjct  1    KKILRKATEEDLERLEENREKEEEALEICREKIREHGLPMKLVDVEYQ  48



Lambda      K        H        a         alpha
   0.311    0.126    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00000757

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461321 pfam04468, PSP1, PSP1 C-terminal conserved region. Thi...  64.7    2e-13


>CDD:461321 pfam04468, PSP1, PSP1 C-terminal conserved region.  This region 
is present in both eukaryotes and eubacteria. The yeast PSP1 
protein is involved in suppressing mutations in the DNA 
polymerase alpha subunit in yeast.
Length=86

 Score = 64.7 bits (159),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 0/48 (0%)

Query  665  KLIKRLAQNHEILTLRDKEGNEAKAKRVCQQKVAEHRLNMEILDAEFQ  712
            K I R A   ++  L +    E +A  +C++K+ EH L M+++D E+Q
Sbjct  1    KKILRKATEEDLERLEENREKEEEALEICREKIREHGLPMKLVDVEYQ  48



Lambda      K        H        a         alpha
   0.311    0.126    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00006798

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.142    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00006799

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.520    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00000759

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00000760

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00000761

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00006801

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0826    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00006802

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460066 pfam01106, NifU, NifU-like domain. This is an alignmen...  111     3e-33


>CDD:460066 pfam01106, NifU, NifU-like domain.  This is an alignment of the 
carboxy-terminal domain. This is the only common region between 
the NifU protein from nitrogen-fixing bacteria and rhodobacterial 
species. The biochemical function of NifU is unknown.
Length=67

 Score = 111 bits (281),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 45/60 (75%), Gaps = 0/60 (0%)

Query  2   IKELLETRIRPAIQEDGGDIELRGFENGIVKLKLRGACRTCDSSTVTLKNGIESMLMHYV  61
           I+E+LE  IRPA+Q DGGDIEL   ++G+V ++L+GAC  C SST+TLKNGIE  L   V
Sbjct  1   IEEVLEEEIRPALQADGGDIELVDVDDGVVYVRLQGACSGCPSSTMTLKNGIEQALKEKV  60



Lambda      K        H        a         alpha
   0.330    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00000762

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460066 pfam01106, NifU, NifU-like domain. This is an alignmen...  111     3e-33


>CDD:460066 pfam01106, NifU, NifU-like domain.  This is an alignment of the 
carboxy-terminal domain. This is the only common region between 
the NifU protein from nitrogen-fixing bacteria and rhodobacterial 
species. The biochemical function of NifU is unknown.
Length=67

 Score = 111 bits (281),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 45/60 (75%), Gaps = 0/60 (0%)

Query  2   IKELLETRIRPAIQEDGGDIELRGFENGIVKLKLRGACRTCDSSTVTLKNGIESMLMHYV  61
           I+E+LE  IRPA+Q DGGDIEL   ++G+V ++L+GAC  C SST+TLKNGIE  L   V
Sbjct  1   IEEVLEEEIRPALQADGGDIELVDVDDGVVYVRLQGACSGCPSSTMTLKNGIEQALKEKV  60



Lambda      K        H        a         alpha
   0.330    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00000763

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460066 pfam01106, NifU, NifU-like domain. This is an alignmen...  111     3e-33


>CDD:460066 pfam01106, NifU, NifU-like domain.  This is an alignment of the 
carboxy-terminal domain. This is the only common region between 
the NifU protein from nitrogen-fixing bacteria and rhodobacterial 
species. The biochemical function of NifU is unknown.
Length=67

 Score = 111 bits (281),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 45/60 (75%), Gaps = 0/60 (0%)

Query  2   IKELLETRIRPAIQEDGGDIELRGFENGIVKLKLRGACRTCDSSTVTLKNGIESMLMHYV  61
           I+E+LE  IRPA+Q DGGDIEL   ++G+V ++L+GAC  C SST+TLKNGIE  L   V
Sbjct  1   IEEVLEEEIRPALQADGGDIELVDVDDGVVYVRLQGACSGCPSSTMTLKNGIEQALKEKV  60



Lambda      K        H        a         alpha
   0.330    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00000764

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460066 pfam01106, NifU, NifU-like domain. This is an alignmen...  111     3e-33


>CDD:460066 pfam01106, NifU, NifU-like domain.  This is an alignment of the 
carboxy-terminal domain. This is the only common region between 
the NifU protein from nitrogen-fixing bacteria and rhodobacterial 
species. The biochemical function of NifU is unknown.
Length=67

 Score = 111 bits (281),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 45/60 (75%), Gaps = 0/60 (0%)

Query  2   IKELLETRIRPAIQEDGGDIELRGFENGIVKLKLRGACRTCDSSTVTLKNGIESMLMHYV  61
           I+E+LE  IRPA+Q DGGDIEL   ++G+V ++L+GAC  C SST+TLKNGIE  L   V
Sbjct  1   IEEVLEEEIRPALQADGGDIELVDVDDGVVYVRLQGACSGCPSSTMTLKNGIEQALKEKV  60



Lambda      K        H        a         alpha
   0.330    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00006804

Length=685
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  211     3e-65
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  77.0    1e-17


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 211 bits (539),  Expect = 3e-65, Method: Composition-based stats.
 Identities = 66/184 (36%), Positives = 107/184 (58%), Gaps = 5/184 (3%)

Query  450  DFARELTRIDWIMFNSFRPRDLVRHVSISGPDKDKIQSLKHVNRMIKQFNHVAFFVASMI  509
            + AR+LT I++ +F   +PR+L+         KDK ++  ++  MI +FN ++ +VAS I
Sbjct  1    ELARQLTLIEFELFRKIKPRELLGSAWSK---KDKKENSPNIEAMIARFNKLSNWVASEI  57

Query  510  LLRDKPKHRARALEKFMNIAQKLRRLNNYNSLGALIAGINGTPVHRLSQTRDLVPVQVQK  569
            L  +  K RA+ ++KF+ IA+  R LNN+NSL A+++G+N +P+ RL +T +LV  + +K
Sbjct  58   LSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELVSKKYKK  117

Query  570  DFMRLVILMGTQKSHFAYRLAWDNSFSERIPFLPLHRRDLVSAEEGNKTFVGDNRSRINW  629
                L  LM   ++   YR A  ++    IPFL L+  DL   EEGN  F+      IN+
Sbjct  118  TLEELEKLMSPSRNFKNYREALSSASPPCIPFLGLYLTDLTFIEEGNPDFLEGG--LINF  175

Query  630  KKFE  633
            +K  
Sbjct  176  EKRR  179


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 77.0 bits (190),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query  205  TFDELVDRLVAQPMSKQDSKFSSIFLCLYRKFAAPASLLNALIHRF-ERNEKNITDQLAR  263
            T ++LV+ L        D  F S FL  YR F  PA LL  LI R+      +++     
Sbjct  6    TLEKLVEYLT-STRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSSDSYW  64

Query  264  IAD-----QLRLLNVMAQWVSEYPGDLAY-PKTRKRILDF  297
            I+      ++R+L+V+  WV  Y  D    P    R+  F
Sbjct  65   ISKKTLPIRIRVLSVLRHWVENYFSDFNDDPVLLSRLEKF  104



Lambda      K        H        a         alpha
   0.315    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 873075680


Query= TCONS_00000765

Length=815
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  210     4e-64
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  76.2    3e-17


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 210 bits (537),  Expect = 4e-64, Method: Composition-based stats.
 Identities = 66/184 (36%), Positives = 107/184 (58%), Gaps = 5/184 (3%)

Query  565  DFARELTRIDWIMFNSFRPRDLVRHVSISGPDKDKIQSLKHVNRMIKQFNHVAFFVASMI  624
            + AR+LT I++ +F   +PR+L+         KDK ++  ++  MI +FN ++ +VAS I
Sbjct  1    ELARQLTLIEFELFRKIKPRELLGSAWSK---KDKKENSPNIEAMIARFNKLSNWVASEI  57

Query  625  LLRDKPKHRARALEKFMNIAQKLRRLNNYNSLGALIAGINGTPVHRLSQTRDLVPVQVQK  684
            L  +  K RA+ ++KF+ IA+  R LNN+NSL A+++G+N +P+ RL +T +LV  + +K
Sbjct  58   LSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELVSKKYKK  117

Query  685  DFMRLVILMGTQKSHFAYRLAWDNSFSERIPFLPLHRRDLVSAEEGNKTFVGDNRSRINW  744
                L  LM   ++   YR A  ++    IPFL L+  DL   EEGN  F+      IN+
Sbjct  118  TLEELEKLMSPSRNFKNYREALSSASPPCIPFLGLYLTDLTFIEEGNPDFLEGG--LINF  175

Query  745  KKFE  748
            +K  
Sbjct  176  EKRR  179


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 76.2 bits (188),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query  320  TFDELVDRLVAQPMSKQDSKFSSIFLCLYRKFAAPASLLNALIHRF-ERNEKNITDQLAR  378
            T ++LV+ L        D  F S FL  YR F  PA LL  LI R+      +++     
Sbjct  6    TLEKLVEYLT-STRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSSDSYW  64

Query  379  IAD-----QLRLLNVMAQWVSEYPGDLAY-PKTRKRILDF  412
            I+      ++R+L+V+  WV  Y  D    P    R+  F
Sbjct  65   ISKKTLPIRIRVLSVLRHWVENYFSDFNDDPVLLSRLEKF  104



Lambda      K        H        a         alpha
   0.315    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1049164592


Query= TCONS_00000766

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00006805

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426097 pfam01171, ATP_bind_3, PP-loop family. This family of ...  86.5    2e-20
CDD:465147 pfam16503, zn-ribbon_14, Zinc-ribbon. This is a family...  70.3    3e-16


>CDD:426097 pfam01171, ATP_bind_3, PP-loop family.  This family of proteins 
belongs to the PP-loop superfamily.
Length=178

 Score = 86.5 bits (215),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 72/177 (41%), Gaps = 18/177 (10%)

Query  56   IGASGGKDSTVLASVLKTLNERYNYGLELCLLSIDEGIKGYRDDSLETVKRNAVQYDMPL  115
            +  SGG DS  L  +L  L      G+EL    ++ G++   D   E V+    Q  +PL
Sbjct  1    VAVSGGPDSMALLYLLAKLKI--KLGIELTAAHVNHGLREESDREAEHVQALCRQLGIPL  58

Query  116  EI--VGYSELYGWTMDQVVEQVGKKGNCTYCGVFRRQALDRGAARLGIKHVVTGHNADDV  173
            EI  V  ++  G      +E   ++         R    +    + G   ++T H+ DD 
Sbjct  59   EILRVDVAKKSGEN----LEAAARE--------ARYDFFEEALKKHGADVLLTAHHLDDQ  106

Query  174  AETVMMNLLRGDLPRLSRGTSIVTDSAASDIKRSKPLKYAYEKEIVLYAHHKKLDYF  230
             ET +M L RG       G   V + A   I R  PL    + EI  YA   K+ +F
Sbjct  107  LETFLMRLKRGSGLAGLAGIPPVREFAGGRIIR--PLLKVSKAEIEAYAKEHKIPWF  161


>CDD:465147 pfam16503, zn-ribbon_14, Zinc-ribbon.  This is a family of zinc-ribbons 
largely from eukaryotes that lie at the C-terminus 
of cytoplasmic tRNA adenylyltransferase 1 proteins. Most of 
these proteins carry an ATP-binding domain towards the N-terminus.
Length=32

 Score = 70.3 bits (173),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 27/32 (84%), Positives = 29/32 (91%), Gaps = 0/32 (0%)

Query  361  GNCERCGYISSQKICKACMLLDGLNKNRPKTA  392
            G CERCGYISSQKICKAC+LL+GLNK RPK A
Sbjct  1    GRCERCGYISSQKICKACVLLEGLNKGRPKIA  32



Lambda      K        H        a         alpha
   0.316    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00006806

Length=800
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  210     3e-64
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  76.6    2e-17


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 210 bits (538),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 66/184 (36%), Positives = 107/184 (58%), Gaps = 5/184 (3%)

Query  565  DFARELTRIDWIMFNSFRPRDLVRHVSISGPDKDKIQSLKHVNRMIKQFNHVAFFVASMI  624
            + AR+LT I++ +F   +PR+L+         KDK ++  ++  MI +FN ++ +VAS I
Sbjct  1    ELARQLTLIEFELFRKIKPRELLGSAWSK---KDKKENSPNIEAMIARFNKLSNWVASEI  57

Query  625  LLRDKPKHRARALEKFMNIAQKLRRLNNYNSLGALIAGINGTPVHRLSQTRDLVPVQVQK  684
            L  +  K RA+ ++KF+ IA+  R LNN+NSL A+++G+N +P+ RL +T +LV  + +K
Sbjct  58   LSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELVSKKYKK  117

Query  685  DFMRLVILMGTQKSHFAYRLAWDNSFSERIPFLPLHRRDLVSAEEGNKTFVGDNRSRINW  744
                L  LM   ++   YR A  ++    IPFL L+  DL   EEGN  F+      IN+
Sbjct  118  TLEELEKLMSPSRNFKNYREALSSASPPCIPFLGLYLTDLTFIEEGNPDFLEGG--LINF  175

Query  745  KKFE  748
            +K  
Sbjct  176  EKRR  179


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 76.6 bits (189),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query  320  TFDELVDRLVAQPMSKQDSKFSSIFLCLYRKFAAPASLLNALIHRF-ERNEKNITDQLAR  378
            T ++LV+ L        D  F S FL  YR F  PA LL  LI R+      +++     
Sbjct  6    TLEKLVEYLT-STRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSSDSYW  64

Query  379  IAD-----QLRLLNVMAQWVSEYPGDLAY-PKTRKRILDF  412
            I+      ++R+L+V+  WV  Y  D    P    R+  F
Sbjct  65   ISKKTLPIRIRVLSVLRHWVENYFSDFNDDPVLLSRLEKF  104



Lambda      K        H        a         alpha
   0.315    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1027337312


Query= TCONS_00006808

Length=913
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  212     3e-64
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  77.0    2e-17


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 212 bits (541),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 66/184 (36%), Positives = 107/184 (58%), Gaps = 5/184 (3%)

Query  678  DFARELTRIDWIMFNSFRPRDLVRHVSISGPDKDKIQSLKHVNRMIKQFNHVAFFVASMI  737
            + AR+LT I++ +F   +PR+L+         KDK ++  ++  MI +FN ++ +VAS I
Sbjct  1    ELARQLTLIEFELFRKIKPRELLGSAWSK---KDKKENSPNIEAMIARFNKLSNWVASEI  57

Query  738  LLRDKPKHRARALEKFMNIAQKLRRLNNYNSLGALIAGINGTPVHRLSQTRDLVPVQVQK  797
            L  +  K RA+ ++KF+ IA+  R LNN+NSL A+++G+N +P+ RL +T +LV  + +K
Sbjct  58   LSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELVSKKYKK  117

Query  798  DFMRLVILMGTQKSHFAYRLAWDNSFSERIPFLPLHRRDLVSAEEGNKTFVGDNRSRINW  857
                L  LM   ++   YR A  ++    IPFL L+  DL   EEGN  F+      IN+
Sbjct  118  TLEELEKLMSPSRNFKNYREALSSASPPCIPFLGLYLTDLTFIEEGNPDFLEGG--LINF  175

Query  858  KKFE  861
            +K  
Sbjct  176  EKRR  179


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 77.0 bits (190),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query  433  TFDELVDRLVAQPMSKQDSKFSSIFLCLYRKFAAPASLLNALIHRF-ERNEKNITDQLAR  491
            T ++LV+ L        D  F S FL  YR F  PA LL  LI R+      +++     
Sbjct  6    TLEKLVEYLT-STRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSSDSYW  64

Query  492  IAD-----QLRLLNVMAQWVSEYPGDLAY-PKTRKRILDF  525
            I+      ++R+L+V+  WV  Y  D    P    R+  F
Sbjct  65   ISKKTLPIRIRVLSVLRHWVENYFSDFNDDPVLLSRLEKF  104



Lambda      K        H        a         alpha
   0.315    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1174250452


Query= TCONS_00000767

Length=700
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  210     6e-65
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  76.6    2e-17


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 210 bits (538),  Expect = 6e-65, Method: Composition-based stats.
 Identities = 66/184 (36%), Positives = 107/184 (58%), Gaps = 5/184 (3%)

Query  450  DFARELTRIDWIMFNSFRPRDLVRHVSISGPDKDKIQSLKHVNRMIKQFNHVAFFVASMI  509
            + AR+LT I++ +F   +PR+L+         KDK ++  ++  MI +FN ++ +VAS I
Sbjct  1    ELARQLTLIEFELFRKIKPRELLGSAWSK---KDKKENSPNIEAMIARFNKLSNWVASEI  57

Query  510  LLRDKPKHRARALEKFMNIAQKLRRLNNYNSLGALIAGINGTPVHRLSQTRDLVPVQVQK  569
            L  +  K RA+ ++KF+ IA+  R LNN+NSL A+++G+N +P+ RL +T +LV  + +K
Sbjct  58   LSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELVSKKYKK  117

Query  570  DFMRLVILMGTQKSHFAYRLAWDNSFSERIPFLPLHRRDLVSAEEGNKTFVGDNRSRINW  629
                L  LM   ++   YR A  ++    IPFL L+  DL   EEGN  F+      IN+
Sbjct  118  TLEELEKLMSPSRNFKNYREALSSASPPCIPFLGLYLTDLTFIEEGNPDFLEGG--LINF  175

Query  630  KKFE  633
            +K  
Sbjct  176  EKRR  179


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 76.6 bits (189),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query  205  TFDELVDRLVAQPMSKQDSKFSSIFLCLYRKFAAPASLLNALIHRF-ERNEKNITDQLAR  263
            T ++LV+ L        D  F S FL  YR F  PA LL  LI R+      +++     
Sbjct  6    TLEKLVEYLT-STRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSSDSYW  64

Query  264  IAD-----QLRLLNVMAQWVSEYPGDLAY-PKTRKRILDF  297
            I+      ++R+L+V+  WV  Y  D    P    R+  F
Sbjct  65   ISKKTLPIRIRVLSVLRHWVENYFSDFNDDPVLLSRLEKF  104



Lambda      K        H        a         alpha
   0.315    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 895197530


Query= TCONS_00000768

Length=700
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  210     6e-65
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  76.6    2e-17


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 210 bits (538),  Expect = 6e-65, Method: Composition-based stats.
 Identities = 66/184 (36%), Positives = 107/184 (58%), Gaps = 5/184 (3%)

Query  450  DFARELTRIDWIMFNSFRPRDLVRHVSISGPDKDKIQSLKHVNRMIKQFNHVAFFVASMI  509
            + AR+LT I++ +F   +PR+L+         KDK ++  ++  MI +FN ++ +VAS I
Sbjct  1    ELARQLTLIEFELFRKIKPRELLGSAWSK---KDKKENSPNIEAMIARFNKLSNWVASEI  57

Query  510  LLRDKPKHRARALEKFMNIAQKLRRLNNYNSLGALIAGINGTPVHRLSQTRDLVPVQVQK  569
            L  +  K RA+ ++KF+ IA+  R LNN+NSL A+++G+N +P+ RL +T +LV  + +K
Sbjct  58   LSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELVSKKYKK  117

Query  570  DFMRLVILMGTQKSHFAYRLAWDNSFSERIPFLPLHRRDLVSAEEGNKTFVGDNRSRINW  629
                L  LM   ++   YR A  ++    IPFL L+  DL   EEGN  F+      IN+
Sbjct  118  TLEELEKLMSPSRNFKNYREALSSASPPCIPFLGLYLTDLTFIEEGNPDFLEGG--LINF  175

Query  630  KKFE  633
            +K  
Sbjct  176  EKRR  179


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 76.6 bits (189),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query  205  TFDELVDRLVAQPMSKQDSKFSSIFLCLYRKFAAPASLLNALIHRF-ERNEKNITDQLAR  263
            T ++LV+ L        D  F S FL  YR F  PA LL  LI R+      +++     
Sbjct  6    TLEKLVEYLT-STRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSSDSYW  64

Query  264  IAD-----QLRLLNVMAQWVSEYPGDLAY-PKTRKRILDF  297
            I+      ++R+L+V+  WV  Y  D    P    R+  F
Sbjct  65   ISKKTLPIRIRVLSVLRHWVENYFSDFNDDPVLLSRLEKF  104



Lambda      K        H        a         alpha
   0.315    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 895197530


Query= TCONS_00000769

Length=815
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  210     4e-64
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  76.2    3e-17


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 210 bits (537),  Expect = 4e-64, Method: Composition-based stats.
 Identities = 66/184 (36%), Positives = 107/184 (58%), Gaps = 5/184 (3%)

Query  565  DFARELTRIDWIMFNSFRPRDLVRHVSISGPDKDKIQSLKHVNRMIKQFNHVAFFVASMI  624
            + AR+LT I++ +F   +PR+L+         KDK ++  ++  MI +FN ++ +VAS I
Sbjct  1    ELARQLTLIEFELFRKIKPRELLGSAWSK---KDKKENSPNIEAMIARFNKLSNWVASEI  57

Query  625  LLRDKPKHRARALEKFMNIAQKLRRLNNYNSLGALIAGINGTPVHRLSQTRDLVPVQVQK  684
            L  +  K RA+ ++KF+ IA+  R LNN+NSL A+++G+N +P+ RL +T +LV  + +K
Sbjct  58   LSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELVSKKYKK  117

Query  685  DFMRLVILMGTQKSHFAYRLAWDNSFSERIPFLPLHRRDLVSAEEGNKTFVGDNRSRINW  744
                L  LM   ++   YR A  ++    IPFL L+  DL   EEGN  F+      IN+
Sbjct  118  TLEELEKLMSPSRNFKNYREALSSASPPCIPFLGLYLTDLTFIEEGNPDFLEGG--LINF  175

Query  745  KKFE  748
            +K  
Sbjct  176  EKRR  179


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 76.2 bits (188),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query  320  TFDELVDRLVAQPMSKQDSKFSSIFLCLYRKFAAPASLLNALIHRF-ERNEKNITDQLAR  378
            T ++LV+ L        D  F S FL  YR F  PA LL  LI R+      +++     
Sbjct  6    TLEKLVEYLT-STRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSSDSYW  64

Query  379  IAD-----QLRLLNVMAQWVSEYPGDLAY-PKTRKRILDF  412
            I+      ++R+L+V+  WV  Y  D    P    R+  F
Sbjct  65   ISKKTLPIRIRVLSVLRHWVENYFSDFNDDPVLLSRLEKF  104



Lambda      K        H        a         alpha
   0.315    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1049164592


Query= TCONS_00000770

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  205     1e-64
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  64.2    2e-13


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 205 bits (523),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 66/184 (36%), Positives = 107/184 (58%), Gaps = 5/184 (3%)

Query  233  DFARELTRIDWIMFNSFRPRDLVRHVSISGPDKDKIQSLKHVNRMIKQFNHVAFFVASMI  292
            + AR+LT I++ +F   +PR+L+         KDK ++  ++  MI +FN ++ +VAS I
Sbjct  1    ELARQLTLIEFELFRKIKPRELLGSAWSK---KDKKENSPNIEAMIARFNKLSNWVASEI  57

Query  293  LLRDKPKHRARALEKFMNIAQKLRRLNNYNSLGALIAGINGTPVHRLSQTRDLVPVQVQK  352
            L  +  K RA+ ++KF+ IA+  R LNN+NSL A+++G+N +P+ RL +T +LV  + +K
Sbjct  58   LSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELVSKKYKK  117

Query  353  DFMRLVILMGTQKSHFAYRLAWDNSFSERIPFLPLHRRDLVSAEEGNKTFVGDNRSRINW  412
                L  LM   ++   YR A  ++    IPFL L+  DL   EEGN  F+      IN+
Sbjct  118  TLEELEKLMSPSRNFKNYREALSSASPPCIPFLGLYLTDLTFIEEGNPDFLEGG--LINF  175

Query  413  KKFE  416
            +K  
Sbjct  176  EKRR  179


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 64.2 bits (157),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 26/87 (30%), Positives = 37/87 (43%), Gaps = 7/87 (8%)

Query  1    MSKQDSKFSSIFLCLYRKFAAPASLLNALIHRF-ERNEKNITDQLARIAD-----QLRLL  54
                D  F S FL  YR F  PA LL  LI R+      +++     I+      ++R+L
Sbjct  18   RIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSSDSYWISKKTLPIRIRVL  77

Query  55   NVMAQWVSEYPGDLAY-PKTRKRILDF  80
            +V+  WV  Y  D    P    R+  F
Sbjct  78   SVLRHWVENYFSDFNDDPVLLSRLEKF  104



Lambda      K        H        a         alpha
   0.319    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593513872


Query= TCONS_00000771

Length=119
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396303 pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12    108     2e-31


>CDD:396303 pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12.  
Length=207

 Score = 108 bits (272),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 52/108 (48%), Positives = 67/108 (62%), Gaps = 4/108 (4%)

Query  12   NYEIMVWLGALGGAGPISSTGSPIATPTVAGIKFNLYLGPNGSMQVYSFVAQSTTNSFSG  71
            +YE+M+WL   G   PI   GS I T TV G  + L+ G NG   VYSFVA+S  N +SG
Sbjct  102  DYELMIWLARYGNIQPI---GSQIGTATVGGETWELWYGANGEQDVYSFVAKSPINGWSG  158

Query  72   DMRDFFTYLESNQGL-SSDLYLVDVQAGTEPFSGSNAVFTVSDYSVSV  118
            D++DFF YL S +G  +SD YL   Q GTEPF+G     TV +++ SV
Sbjct  159  DVKDFFDYLTSARGFPASDQYLTSWQFGTEPFTGGPETLTVENWTASV  206



Lambda      K        H        a         alpha
   0.315    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00006809

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396303 pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12    177     1e-56


>CDD:396303 pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12.  
Length=207

 Score = 177 bits (451),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 92/210 (44%), Positives = 129/210 (61%), Gaps = 8/210 (4%)

Query  32   GNYILYNNLWGQAQATSGSQCTTFESLSGNTIVWNTKWSWSGGQGQVKSFANAALQFTPK  91
              Y + NNLWG  +A SGSQC T + L+ +   W+T W+WSGG+G VKS++N+      K
Sbjct  1    PPYSVNNNLWGI-KAGSGSQCVTVDKLTSSGASWHTSWTWSGGEGPVKSYSNSGSALPVK  59

Query  92   KLSSVKSIDSTWKWNYSGSNIVADVAYDMFLSTSP---GGDHNYEIMVWLGALGGAGPIS  148
            ++SSV SI ++  W+   +N+ A+VAYD+F + +        +YE+M+WL   G   PI 
Sbjct  60   RVSSVSSIPTSVSWSQDDTNVPANVAYDLFTAANANHVTSSGDYELMIWLARYGNIQPI-  118

Query  149  STGSPIATPTVAGIKFNLYLGPNGSMQVYSFVAQSTTNSFSGDMRDFFTYLESNQGL-SS  207
              GS I T TV G  + L+ G NG   VYSFVA+S  N +SGD++DFF YL S +G  +S
Sbjct  119  --GSQIGTATVGGETWELWYGANGEQDVYSFVAKSPINGWSGDVKDFFDYLTSARGFPAS  176

Query  208  DLYLVDVQAGTEPFSGSNAVFTVSDYSVSV  237
            D YL   Q GTEPF+G     TV +++ SV
Sbjct  177  DQYLTSWQFGTEPFTGGPETLTVENWTASV  206



Lambda      K        H        a         alpha
   0.313    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00000773

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396303 pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12    177     1e-56


>CDD:396303 pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12.  
Length=207

 Score = 177 bits (451),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 92/210 (44%), Positives = 129/210 (61%), Gaps = 8/210 (4%)

Query  32   GNYILYNNLWGQAQATSGSQCTTFESLSGNTIVWNTKWSWSGGQGQVKSFANAALQFTPK  91
              Y + NNLWG  +A SGSQC T + L+ +   W+T W+WSGG+G VKS++N+      K
Sbjct  1    PPYSVNNNLWGI-KAGSGSQCVTVDKLTSSGASWHTSWTWSGGEGPVKSYSNSGSALPVK  59

Query  92   KLSSVKSIDSTWKWNYSGSNIVADVAYDMFLSTSP---GGDHNYEIMVWLGALGGAGPIS  148
            ++SSV SI ++  W+   +N+ A+VAYD+F + +        +YE+M+WL   G   PI 
Sbjct  60   RVSSVSSIPTSVSWSQDDTNVPANVAYDLFTAANANHVTSSGDYELMIWLARYGNIQPI-  118

Query  149  STGSPIATPTVAGIKFNLYLGPNGSMQVYSFVAQSTTNSFSGDMRDFFTYLESNQGL-SS  207
              GS I T TV G  + L+ G NG   VYSFVA+S  N +SGD++DFF YL S +G  +S
Sbjct  119  --GSQIGTATVGGETWELWYGANGEQDVYSFVAKSPINGWSGDVKDFFDYLTSARGFPAS  176

Query  208  DLYLVDVQAGTEPFSGSNAVFTVSDYSVSV  237
            D YL   Q GTEPF+G     TV +++ SV
Sbjct  177  DQYLTSWQFGTEPFTGGPETLTVENWTASV  206



Lambda      K        H        a         alpha
   0.313    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00000772

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396303 pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12    177     1e-56


>CDD:396303 pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12.  
Length=207

 Score = 177 bits (451),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 92/210 (44%), Positives = 129/210 (61%), Gaps = 8/210 (4%)

Query  32   GNYILYNNLWGQAQATSGSQCTTFESLSGNTIVWNTKWSWSGGQGQVKSFANAALQFTPK  91
              Y + NNLWG  +A SGSQC T + L+ +   W+T W+WSGG+G VKS++N+      K
Sbjct  1    PPYSVNNNLWGI-KAGSGSQCVTVDKLTSSGASWHTSWTWSGGEGPVKSYSNSGSALPVK  59

Query  92   KLSSVKSIDSTWKWNYSGSNIVADVAYDMFLSTSP---GGDHNYEIMVWLGALGGAGPIS  148
            ++SSV SI ++  W+   +N+ A+VAYD+F + +        +YE+M+WL   G   PI 
Sbjct  60   RVSSVSSIPTSVSWSQDDTNVPANVAYDLFTAANANHVTSSGDYELMIWLARYGNIQPI-  118

Query  149  STGSPIATPTVAGIKFNLYLGPNGSMQVYSFVAQSTTNSFSGDMRDFFTYLESNQGL-SS  207
              GS I T TV G  + L+ G NG   VYSFVA+S  N +SGD++DFF YL S +G  +S
Sbjct  119  --GSQIGTATVGGETWELWYGANGEQDVYSFVAKSPINGWSGDVKDFFDYLTSARGFPAS  176

Query  208  DLYLVDVQAGTEPFSGSNAVFTVSDYSVSV  237
            D YL   Q GTEPF+G     TV +++ SV
Sbjct  177  DQYLTSWQFGTEPFTGGPETLTVENWTASV  206



Lambda      K        H        a         alpha
   0.313    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00000775

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396303 pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12    177     1e-56


>CDD:396303 pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12.  
Length=207

 Score = 177 bits (451),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 92/210 (44%), Positives = 129/210 (61%), Gaps = 8/210 (4%)

Query  32   GNYILYNNLWGQAQATSGSQCTTFESLSGNTIVWNTKWSWSGGQGQVKSFANAALQFTPK  91
              Y + NNLWG  +A SGSQC T + L+ +   W+T W+WSGG+G VKS++N+      K
Sbjct  1    PPYSVNNNLWGI-KAGSGSQCVTVDKLTSSGASWHTSWTWSGGEGPVKSYSNSGSALPVK  59

Query  92   KLSSVKSIDSTWKWNYSGSNIVADVAYDMFLSTSP---GGDHNYEIMVWLGALGGAGPIS  148
            ++SSV SI ++  W+   +N+ A+VAYD+F + +        +YE+M+WL   G   PI 
Sbjct  60   RVSSVSSIPTSVSWSQDDTNVPANVAYDLFTAANANHVTSSGDYELMIWLARYGNIQPI-  118

Query  149  STGSPIATPTVAGIKFNLYLGPNGSMQVYSFVAQSTTNSFSGDMRDFFTYLESNQGL-SS  207
              GS I T TV G  + L+ G NG   VYSFVA+S  N +SGD++DFF YL S +G  +S
Sbjct  119  --GSQIGTATVGGETWELWYGANGEQDVYSFVAKSPINGWSGDVKDFFDYLTSARGFPAS  176

Query  208  DLYLVDVQAGTEPFSGSNAVFTVSDYSVSV  237
            D YL   Q GTEPF+G     TV +++ SV
Sbjct  177  DQYLTSWQFGTEPFTGGPETLTVENWTASV  206



Lambda      K        H        a         alpha
   0.313    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00006810

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396303 pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12    177     1e-56


>CDD:396303 pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12.  
Length=207

 Score = 177 bits (451),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 92/210 (44%), Positives = 129/210 (61%), Gaps = 8/210 (4%)

Query  32   GNYILYNNLWGQAQATSGSQCTTFESLSGNTIVWNTKWSWSGGQGQVKSFANAALQFTPK  91
              Y + NNLWG  +A SGSQC T + L+ +   W+T W+WSGG+G VKS++N+      K
Sbjct  1    PPYSVNNNLWGI-KAGSGSQCVTVDKLTSSGASWHTSWTWSGGEGPVKSYSNSGSALPVK  59

Query  92   KLSSVKSIDSTWKWNYSGSNIVADVAYDMFLSTSP---GGDHNYEIMVWLGALGGAGPIS  148
            ++SSV SI ++  W+   +N+ A+VAYD+F + +        +YE+M+WL   G   PI 
Sbjct  60   RVSSVSSIPTSVSWSQDDTNVPANVAYDLFTAANANHVTSSGDYELMIWLARYGNIQPI-  118

Query  149  STGSPIATPTVAGIKFNLYLGPNGSMQVYSFVAQSTTNSFSGDMRDFFTYLESNQGL-SS  207
              GS I T TV G  + L+ G NG   VYSFVA+S  N +SGD++DFF YL S +G  +S
Sbjct  119  --GSQIGTATVGGETWELWYGANGEQDVYSFVAKSPINGWSGDVKDFFDYLTSARGFPAS  176

Query  208  DLYLVDVQAGTEPFSGSNAVFTVSDYSVSV  237
            D YL   Q GTEPF+G     TV +++ SV
Sbjct  177  DQYLTSWQFGTEPFTGGPETLTVENWTASV  206



Lambda      K        H        a         alpha
   0.313    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00006811

Length=106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396303 pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12    63.0    5e-14


>CDD:396303 pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12.  
Length=207

 Score = 63.0 bits (153),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 33/74 (45%), Positives = 48/74 (65%), Gaps = 1/74 (1%)

Query  32   GNYILYNNLWGQAQATSGSQCTTFESLSGNTIVWNTKWSWSGGQGQVKSFANAALQFTPK  91
              Y + NNLWG  +A SGSQC T + L+ +   W+T W+WSGG+G VKS++N+      K
Sbjct  1    PPYSVNNNLWGI-KAGSGSQCVTVDKLTSSGASWHTSWTWSGGEGPVKSYSNSGSALPVK  59

Query  92   KLSSVKSIDSTWKW  105
            ++SSV SI ++  W
Sbjct  60   RVSSVSSIPTSVSW  73



Lambda      K        H        a         alpha
   0.312    0.121    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00000774

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396303 pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12    177     1e-56


>CDD:396303 pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12.  
Length=207

 Score = 177 bits (451),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 92/210 (44%), Positives = 129/210 (61%), Gaps = 8/210 (4%)

Query  32   GNYILYNNLWGQAQATSGSQCTTFESLSGNTIVWNTKWSWSGGQGQVKSFANAALQFTPK  91
              Y + NNLWG  +A SGSQC T + L+ +   W+T W+WSGG+G VKS++N+      K
Sbjct  1    PPYSVNNNLWGI-KAGSGSQCVTVDKLTSSGASWHTSWTWSGGEGPVKSYSNSGSALPVK  59

Query  92   KLSSVKSIDSTWKWNYSGSNIVADVAYDMFLSTSP---GGDHNYEIMVWLGALGGAGPIS  148
            ++SSV SI ++  W+   +N+ A+VAYD+F + +        +YE+M+WL   G   PI 
Sbjct  60   RVSSVSSIPTSVSWSQDDTNVPANVAYDLFTAANANHVTSSGDYELMIWLARYGNIQPI-  118

Query  149  STGSPIATPTVAGIKFNLYLGPNGSMQVYSFVAQSTTNSFSGDMRDFFTYLESNQGL-SS  207
              GS I T TV G  + L+ G NG   VYSFVA+S  N +SGD++DFF YL S +G  +S
Sbjct  119  --GSQIGTATVGGETWELWYGANGEQDVYSFVAKSPINGWSGDVKDFFDYLTSARGFPAS  176

Query  208  DLYLVDVQAGTEPFSGSNAVFTVSDYSVSV  237
            D YL   Q GTEPF+G     TV +++ SV
Sbjct  177  DQYLTSWQFGTEPFTGGPETLTVENWTASV  206



Lambda      K        H        a         alpha
   0.313    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00006813

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.517    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00000778

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain. Cyclin...  71.8    7e-16


>CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain.  Cyclins regulate 
cyclin dependent kinases (CDKs). Cyclin-0 (CCNO) is a Uracil-DNA 
glycosylase that is related to other cyclins. Cyclins 
contain two domains of similar all-alpha fold, of which 
this family corresponds with the N-terminal domain.
Length=127

 Score = 71.8 bits (177),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 19/102 (19%), Positives = 43/102 (42%), Gaps = 10/102 (10%)

Query  48   TFIISLVTRSQVQVPTLMTSLVYLARLRARLPPVAKGMRCTVHRIFLASLILAAKNLNDS  107
             +++ +  + ++   TL  ++ YL R  ++        +  +  + +  L +AAK     
Sbjct  36   DWLVEVHEKFKLLPETLYLAVNYLDRFLSK----KSVPKNKLQLVGVTCLFIAAKYEEIY  91

Query  108  SPKNKHWARYTAVKGYDGFSFSLPEVNLMERQLLFLLDWDTR  149
             P  +     T     D  +++  E+  MER +L  L++D  
Sbjct  92   PPTVEDLVYIT-----DN-AYTREEILRMERLILETLNFDLS  127



Lambda      K        H        a         alpha
   0.317    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00000776

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00000777

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain. Cyclin...  71.8    9e-16


>CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain.  Cyclins regulate 
cyclin dependent kinases (CDKs). Cyclin-0 (CCNO) is a Uracil-DNA 
glycosylase that is related to other cyclins. Cyclins 
contain two domains of similar all-alpha fold, of which 
this family corresponds with the N-terminal domain.
Length=127

 Score = 71.8 bits (177),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 19/102 (19%), Positives = 43/102 (42%), Gaps = 10/102 (10%)

Query  71   TFIISLVTRSQVQVPTLMTSLVYLARLRARLPPVAKGMRCTVHRIFLASLILAAKNLNDS  130
             +++ +  + ++   TL  ++ YL R  ++        +  +  + +  L +AAK     
Sbjct  36   DWLVEVHEKFKLLPETLYLAVNYLDRFLSK----KSVPKNKLQLVGVTCLFIAAKYEEIY  91

Query  131  SPKNKHWARYTAVKGYDGFSFSLPEVNLMERQLLFLLDWDTR  172
             P  +     T     D  +++  E+  MER +L  L++D  
Sbjct  92   PPTVEDLVYIT-----DN-AYTREEILRMERLILETLNFDLS  127



Lambda      K        H        a         alpha
   0.318    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00000779

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain. Cyclin...  71.8    9e-16


>CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain.  Cyclins regulate 
cyclin dependent kinases (CDKs). Cyclin-0 (CCNO) is a Uracil-DNA 
glycosylase that is related to other cyclins. Cyclins 
contain two domains of similar all-alpha fold, of which 
this family corresponds with the N-terminal domain.
Length=127

 Score = 71.8 bits (177),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 19/102 (19%), Positives = 43/102 (42%), Gaps = 10/102 (10%)

Query  71   TFIISLVTRSQVQVPTLMTSLVYLARLRARLPPVAKGMRCTVHRIFLASLILAAKNLNDS  130
             +++ +  + ++   TL  ++ YL R  ++        +  +  + +  L +AAK     
Sbjct  36   DWLVEVHEKFKLLPETLYLAVNYLDRFLSK----KSVPKNKLQLVGVTCLFIAAKYEEIY  91

Query  131  SPKNKHWARYTAVKGYDGFSFSLPEVNLMERQLLFLLDWDTR  172
             P  +     T     D  +++  E+  MER +L  L++D  
Sbjct  92   PPTVEDLVYIT-----DN-AYTREEILRMERLILETLNFDLS  127



Lambda      K        H        a         alpha
   0.318    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00006814

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain. Cyclin...  67.2    4e-15


>CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain.  Cyclins regulate 
cyclin dependent kinases (CDKs). Cyclin-0 (CCNO) is a Uracil-DNA 
glycosylase that is related to other cyclins. Cyclins 
contain two domains of similar all-alpha fold, of which 
this family corresponds with the N-terminal domain.
Length=127

 Score = 67.2 bits (165),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 19/102 (19%), Positives = 43/102 (42%), Gaps = 10/102 (10%)

Query  71   TFIISLVTRSQVQVPTLMTSLVYLARLRARLPPVAKGMRCTVHRIFLASLILAAKNLNDS  130
             +++ +  + ++   TL  ++ YL R  ++        +  +  + +  L +AAK     
Sbjct  36   DWLVEVHEKFKLLPETLYLAVNYLDRFLSK----KSVPKNKLQLVGVTCLFIAAKYEEIY  91

Query  131  SPKNKHWARYTAVKGYDGFSFSLPEVNLMERQLLFLLDWDTR  172
             P  +     T     D  +++  E+  MER +L  L++D  
Sbjct  92   PPTVEDLVYIT-----DN-AYTREEILRMERLILETLNFDLS  127



Lambda      K        H        a         alpha
   0.323    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0818    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00000780

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402139 pfam10383, Clr2, Transcription-silencing protein Clr2....  184     6e-57


>CDD:402139 pfam10383, Clr2, Transcription-silencing protein Clr2.  Clr2 
is a chromatin silencing protein, one of a quartet of proteins 
forming the core of SHREC, a multienzyme effector complex 
that mediates hetero-chromatic transcriptional gene silencing 
in fission yeast. Clr2 does not have any obvious well-conserved 
domains but, along with the other core proteins, binds 
to the histone deacetylase Clr3, and on its own might also 
have a role in chromatin organisation at the cnt domain, the 
site of kinetochore assembly.
Length=138

 Score = 184 bits (469),  Expect = 6e-57, Method: Composition-based stats.
 Identities = 72/142 (51%), Positives = 86/142 (61%), Gaps = 13/142 (9%)

Query  197  YCMGIFIGAELLIVGDAVRLKPVGYSLSSGQ----KAVTDVMVIDEIRLDLIQCVDDIKS  252
            Y  GI++GAEL+ VGD VRLKP G S++         VTDVMVIDEIR+ L  C  D   
Sbjct  1    YYQGIYLGAELIWVGDTVRLKPSGSSVAELLAGAPPDVTDVMVIDEIRVLLPNCDPD---  57

Query  253  DQLAERYQVRLGGKVYTNNRQRA-----VIDNSMQPPKPLSPEEVLSVFQYIGMSGYGDW  307
             QLAE Y VRL GK+YT +  RA             PKPL PEEV   F  +GMSGYGD+
Sbjct  58   -QLAEPYTVRLAGKIYTPSPLRAYRPPSSNAVPPAAPKPLGPEEVPDGFNAVGMSGYGDY  116

Query  308  YSLNGGKTVDISQGMVIGRCYE  329
            Y    G+ V++S+  VIGRCYE
Sbjct  117  YRHRPGREVEVSEDDVIGRCYE  138



Lambda      K        H        a         alpha
   0.315    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00000781

Length=356


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00006816

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00000785

Length=577
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  232     2e-74


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 232 bits (594),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 87/163 (53%), Positives = 112/163 (69%), Gaps = 5/163 (3%)

Query  408  KCLVLDLDETLVHSSFKVLERADFTIPVEIEGQYHNIYVIKRPGVDQFMKRVGELYEVVV  467
            K LVLDLDETLVHSSF+   ++DF +PV   G+ H  YV KRPG+D+F+K + + YE+V+
Sbjct  1    KTLVLDLDETLVHSSFEPPLKSDFILPVP--GETHGGYVKKRPGLDEFLKELSKYYEIVI  58

Query  468  FTASVSKYGDPLLDQLDIHNV-VHHRLFRDSCYNHQGNYVKDLSQVGRDLRETIIIDNSP  526
            FTAS  +Y DP+LD LD +     HRL+R+SC    G YVKDLS +GRDL   +I+DNSP
Sbjct  59   FTASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVKDLSLLGRDLSRVVIVDNSP  118

Query  527  TSYIFHPQHAIPISSWFSDAHDNELLDLIPVLEDLAGAQVKDV  569
             S++  P + IPI  +F D  DNELL L+P LE L  A V DV
Sbjct  119  DSFLLQPDNGIPIPPFFGDPDDNELLKLLPFLEGL--AGVDDV  159



Lambda      K        H        a         alpha
   0.308    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 724797580


Query= TCONS_00006817

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  145     2e-46


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 145 bits (369),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 58/115 (50%), Positives = 76/115 (66%), Gaps = 3/115 (3%)

Query  1    MKRVGELYEVVVFTASVSKYGDPLLDQLDIHNV-VHHRLFRDSCYNHQGNYVKDLSQVGR  59
            +K + + YE+V+FTAS  +Y DP+LD LD +     HRL+R+SC    G YVKDLS +GR
Sbjct  47   LKELSKYYEIVIFTASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVKDLSLLGR  106

Query  60   DLRETIIIDNSPTSYIFHPQHAIPISSWFSDAHDNELLDLIPVLEDLAGAQVKDV  114
            DL   +I+DNSP S++  P + IPI  +F D  DNELL L+P LE L  A V DV
Sbjct  107  DLSRVVIVDNSPDSFLLQPDNGIPIPPFFGDPDDNELLKLLPFLEGL--AGVDDV  159



Lambda      K        H        a         alpha
   0.321    0.138    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00000783

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  140     8e-40


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 140 bits (354),  Expect = 8e-40, Method: Composition-based stats.
 Identities = 54/101 (53%), Positives = 71/101 (70%), Gaps = 3/101 (3%)

Query  408  KCLVLDLDETLVHSSFKVLERADFTIPVEIEGQYHNIYVIKRPGVDQFMKRVGELYEVVV  467
            K LVLDLDETLVHSSF+   ++DF +PV   G+ H  YV KRPG+D+F+K + + YE+V+
Sbjct  1    KTLVLDLDETLVHSSFEPPLKSDFILPVP--GETHGGYVKKRPGLDEFLKELSKYYEIVI  58

Query  468  FTASVSKYGDPLLDQLDIHNV-VHHRLFRDSCYNHQGNYVK  507
            FTAS  +Y DP+LD LD +     HRL+R+SC    G YVK
Sbjct  59   FTASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVK  99



Lambda      K        H        a         alpha
   0.306    0.125    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00000784

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  219     3e-73


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 219 bits (559),  Expect = 3e-73, Method: Composition-based stats.
 Identities = 87/163 (53%), Positives = 112/163 (69%), Gaps = 5/163 (3%)

Query  82   KCLVLDLDETLVHSSFKVLERADFTIPVEIEGQYHNIYVIKRPGVDQFMKRVGELYEVVV  141
            K LVLDLDETLVHSSF+   ++DF +PV   G+ H  YV KRPG+D+F+K + + YE+V+
Sbjct  1    KTLVLDLDETLVHSSFEPPLKSDFILPVP--GETHGGYVKKRPGLDEFLKELSKYYEIVI  58

Query  142  FTASVSKYGDPLLDQLDIHNV-VHHRLFRDSCYNHQGNYVKDLSQVGRDLRETIIIDNSP  200
            FTAS  +Y DP+LD LD +     HRL+R+SC    G YVKDLS +GRDL   +I+DNSP
Sbjct  59   FTASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVKDLSLLGRDLSRVVIVDNSP  118

Query  201  TSYIFHPQHAIPISSWFSDAHDNELLDLIPVLEDLAGAQVKDV  243
             S++  P + IPI  +F D  DNELL L+P LE L  A V DV
Sbjct  119  DSFLLQPDNGIPIPPFFGDPDDNELLKLLPFLEGL--AGVDDV  159



Lambda      K        H        a         alpha
   0.317    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00000786

Length=63
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  63.4    2e-15


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 63.4 bits (155),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (2%)

Query  1   MKRVGELYEVVVFTASVSKYGDPLLDQLDIHNV-VHHRLFRDSCYNHQGNYVK  52
           +K + + YE+V+FTAS  +Y DP+LD LD +     HRL+R+SC    G YVK
Sbjct  47  LKELSKYYEIVIFTASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVK  99



Lambda      K        H        a         alpha
   0.325    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00006818

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  98.5    8e-25


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 98.5 bits (246),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 37/64 (58%), Positives = 49/64 (77%), Gaps = 2/64 (3%)

Query  408  KCLVLDLDETLVHSSFKVLERADFTIPVEIEGQYHNIYVIKRPGVDQFMKRVGELYEVVV  467
            K LVLDLDETLVHSSF+   ++DF +PV   G+ H  YV KRPG+D+F+K + + YE+V+
Sbjct  1    KTLVLDLDETLVHSSFEPPLKSDFILPVP--GETHGGYVKKRPGLDEFLKELSKYYEIVI  58

Query  468  FTAS  471
            FTAS
Sbjct  59   FTAS  62



Lambda      K        H        a         alpha
   0.304    0.123    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00000788

Length=577
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  232     2e-74


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 232 bits (594),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 87/163 (53%), Positives = 112/163 (69%), Gaps = 5/163 (3%)

Query  408  KCLVLDLDETLVHSSFKVLERADFTIPVEIEGQYHNIYVIKRPGVDQFMKRVGELYEVVV  467
            K LVLDLDETLVHSSF+   ++DF +PV   G+ H  YV KRPG+D+F+K + + YE+V+
Sbjct  1    KTLVLDLDETLVHSSFEPPLKSDFILPVP--GETHGGYVKKRPGLDEFLKELSKYYEIVI  58

Query  468  FTASVSKYGDPLLDQLDIHNV-VHHRLFRDSCYNHQGNYVKDLSQVGRDLRETIIIDNSP  526
            FTAS  +Y DP+LD LD +     HRL+R+SC    G YVKDLS +GRDL   +I+DNSP
Sbjct  59   FTASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVKDLSLLGRDLSRVVIVDNSP  118

Query  527  TSYIFHPQHAIPISSWFSDAHDNELLDLIPVLEDLAGAQVKDV  569
             S++  P + IPI  +F D  DNELL L+P LE L  A V DV
Sbjct  119  DSFLLQPDNGIPIPPFFGDPDDNELLKLLPFLEGL--AGVDDV  159



Lambda      K        H        a         alpha
   0.308    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 724797580


Query= TCONS_00000789

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00000790

Length=356


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00000791

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.142    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00000792

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00000793

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00000794

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00006819

Length=356


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00000795

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00000796

Length=220


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00000798

Length=268


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00000799

Length=552


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 687436880


Query= TCONS_00006820

Length=268


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00006821

Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1         118     2e-37


>CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1.  
Length=83

 Score = 118 bits (299),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 52/83 (63%), Positives = 65/83 (78%), Gaps = 0/83 (0%)

Query  10  EPQIKSVDMTEEMQQEAVEVATEAMEKYHIEKDIAQYIKREFDSRKGATWHCVVGRNFGS  69
           +  IK+ DM EEMQQEA+E+A EA+EKY+IEKDIA YIK+EFD + G TWHC+VG+NFGS
Sbjct  1   KAVIKASDMPEEMQQEAIEIAQEALEKYNIEKDIAAYIKKEFDKKYGPTWHCIVGKNFGS  60

Query  70  FVTHGTHWVASAPLGHCAILLFK  92
           +VTH T       +G+ AILLFK
Sbjct  61  YVTHETGHFIYFYIGNLAILLFK  83



Lambda      K        H        a         alpha
   0.317    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00000800

Length=63
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1         66.8    3e-17


>CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1.  
Length=83

 Score = 66.8 bits (164),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 28/41 (68%), Positives = 35/41 (85%), Gaps = 0/41 (0%)

Query  10  EPQIKSVDMTEEMQQEAVEVATEAMEKYHIEKDIAQYIKRE  50
           +  IK+ DM EEMQQEA+E+A EA+EKY+IEKDIA YIK+E
Sbjct  1   KAVIKASDMPEEMQQEAIEIAQEALEKYNIEKDIAAYIKKE  41



Lambda      K        H        a         alpha
   0.310    0.125    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00006822

Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1         137     7e-45


>CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1.  
Length=83

 Score = 137 bits (348),  Expect = 7e-45, Method: Composition-based stats.
 Identities = 58/83 (70%), Positives = 71/83 (86%), Gaps = 0/83 (0%)

Query  10  EPQIKSVDMTEEMQQEAVEVATEAMEKYHIEKDIAQYIKREFDSRKGATWHCVVGRNFGS  69
           +  IK+ DM EEMQQEA+E+A EA+EKY+IEKDIA YIK+EFD + G TWHC+VG+NFGS
Sbjct  1   KAVIKASDMPEEMQQEAIEIAQEALEKYNIEKDIAAYIKKEFDKKYGPTWHCIVGKNFGS  60

Query  70  FVTHGTKHFIYFYLGHCAILLFK  92
           +VTH T HFIYFY+G+ AILLFK
Sbjct  61  YVTHETGHFIYFYIGNLAILLFK  83



Lambda      K        H        a         alpha
   0.321    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00006823

Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1         137     1e-44


>CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1.  
Length=83

 Score = 137 bits (347),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 58/83 (70%), Positives = 71/83 (86%), Gaps = 0/83 (0%)

Query  10  EPQIKSVDMTEEMQQEAVEVATEAMEKYHIEKDIAQYIKREFDSRKGATWHCVVGRNFGS  69
           +  IK+ DM EEMQQEA+E+A EA+EKY+IEKDIA YIK+EFD + G TWHC+VG+NFGS
Sbjct  1   KAVIKASDMPEEMQQEAIEIAQEALEKYNIEKDIAAYIKKEFDKKYGPTWHCIVGKNFGS  60

Query  70  FVTHGTQHFIYFYLGHCAILLFK  92
           +VTH T HFIYFY+G+ AILLFK
Sbjct  61  YVTHETGHFIYFYIGNLAILLFK  83



Lambda      K        H        a         alpha
   0.321    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00000802

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00006824

Length=116
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1         117     1e-36


>CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1.  
Length=83

 Score = 117 bits (296),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 45/65 (69%), Positives = 56/65 (86%), Gaps = 0/65 (0%)

Query  10  EPQIKSVDMTEEMQQEAVEVATEAMEKYHIEKDIAQYIKREFDSRKGATWHCVVGRNFGS  69
           +  IK+ DM EEMQQEA+E+A EA+EKY+IEKDIA YIK+EFD + G TWHC+VG+NFGS
Sbjct  1   KAVIKASDMPEEMQQEAIEIAQEALEKYNIEKDIAAYIKKEFDKKYGPTWHCIVGKNFGS  60

Query  70  FVTHE  74
           +VTHE
Sbjct  61  YVTHE  65



Lambda      K        H        a         alpha
   0.316    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00006825

Length=85
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1         117     4e-37


>CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1.  
Length=83

 Score = 117 bits (296),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 52/83 (63%), Positives = 64/83 (77%), Gaps = 9/83 (11%)

Query  10  EPQIKSVDMTEEMQQEAVEVATEAMEKYHIEK---------FDSRKGATWHCVVGRNFGS  60
           +  IK+ DM EEMQQEA+E+A EA+EKY+IEK         FD + G TWHC+VG+NFGS
Sbjct  1   KAVIKASDMPEEMQQEAIEIAQEALEKYNIEKDIAAYIKKEFDKKYGPTWHCIVGKNFGS  60

Query  61  FVTHETKHFIYFYLGHCAILLFK  83
           +VTHET HFIYFY+G+ AILLFK
Sbjct  61  YVTHETGHFIYFYIGNLAILLFK  83



Lambda      K        H        a         alpha
   0.320    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00000803

Length=90
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1         128     4e-41


>CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1.  
Length=83

 Score = 128 bits (323),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 56/83 (67%), Positives = 69/83 (83%), Gaps = 4/83 (5%)

Query  10  EPQIKSVDMTEEMQQEAVEVATEAMEKYHIEK----YIKREFDSRKGATWHCVVGRNFGS  65
           +  IK+ DM EEMQQEA+E+A EA+EKY+IEK    YIK+EFD + G TWHC+VG+NFGS
Sbjct  1   KAVIKASDMPEEMQQEAIEIAQEALEKYNIEKDIAAYIKKEFDKKYGPTWHCIVGKNFGS  60

Query  66  FVTHETKHFIYFYLGHCAILLFK  88
           +VTHET HFIYFY+G+ AILLFK
Sbjct  61  YVTHETGHFIYFYIGNLAILLFK  83



Lambda      K        H        a         alpha
   0.320    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00000804

Length=89
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1         130     4e-42


>CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1.  
Length=83

 Score = 130 bits (329),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 57/83 (69%), Positives = 69/83 (83%), Gaps = 5/83 (6%)

Query  10  EPQIKSVDMTEEMQQEAVEVATEAMEKYHIEKDIAQYIKRE-----GATWHCVVGRNFGS  64
           +  IK+ DM EEMQQEA+E+A EA+EKY+IEKDIA YIK+E     G TWHC+VG+NFGS
Sbjct  1   KAVIKASDMPEEMQQEAIEIAQEALEKYNIEKDIAAYIKKEFDKKYGPTWHCIVGKNFGS  60

Query  65  FVTHETKHFIYFYLGHCAILLFK  87
           +VTHET HFIYFY+G+ AILLFK
Sbjct  61  YVTHETGHFIYFYIGNLAILLFK  83



Lambda      K        H        a         alpha
   0.320    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00000805

Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1         112     5e-35


>CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1.  
Length=83

 Score = 112 bits (283),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 49/83 (59%), Positives = 62/83 (75%), Gaps = 0/83 (0%)

Query  10  EPQIKSVDMTEEMQQEAVEVATEAMEKYHIEKDIAQYIKREVRSVRPRSWHCVVGRNFGS  69
           +  IK+ DM EEMQQEA+E+A EA+EKY+IEKDIA YIK+E       +WHC+VG+NFGS
Sbjct  1   KAVIKASDMPEEMQQEAIEIAQEALEKYNIEKDIAAYIKKEFDKKYGPTWHCIVGKNFGS  60

Query  70  FVTHGTHWVASAYLGHCAILLFK  92
           +VTH T      Y+G+ AILLFK
Sbjct  61  YVTHETGHFIYFYIGNLAILLFK  83



Lambda      K        H        a         alpha
   0.319    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00000806

Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1         134     1e-43


>CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1.  
Length=83

 Score = 134 bits (340),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 57/83 (69%), Positives = 70/83 (84%), Gaps = 0/83 (0%)

Query  10  EPQIKSVDMTEEMQQEAVEVATEAMEKYHIEKDIAQYIKREVDSRKGATWHCVVGRNFGS  69
           +  IK+ DM EEMQQEA+E+A EA+EKY+IEKDIA YIK+E D + G TWHC+VG+NFGS
Sbjct  1   KAVIKASDMPEEMQQEAIEIAQEALEKYNIEKDIAAYIKKEFDKKYGPTWHCIVGKNFGS  60

Query  70  FVTHGTKHFIYFYLGHCAILLFK  92
           +VTH T HFIYFY+G+ AILLFK
Sbjct  61  YVTHETGHFIYFYIGNLAILLFK  83



Lambda      K        H        a         alpha
   0.320    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00000808

Length=61
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1         104     4e-32


>CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1.  
Length=83

 Score = 104 bits (261),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 44/59 (75%), Positives = 53/59 (90%), Gaps = 0/59 (0%)

Query  1   MEKYHIEKDIAQYIKREFDSRKGATWHCVVGRNFGSFVTHETKHFIYFYLGHCAILLFK  59
           +EKY+IEKDIA YIK+EFD + G TWHC+VG+NFGS+VTHET HFIYFY+G+ AILLFK
Sbjct  25  LEKYNIEKDIAAYIKKEFDKKYGPTWHCIVGKNFGSYVTHETGHFIYFYIGNLAILLFK  83



Lambda      K        H        a         alpha
   0.330    0.142    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00000807

Length=61
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1         104     4e-32


>CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1.  
Length=83

 Score = 104 bits (261),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 44/59 (75%), Positives = 53/59 (90%), Gaps = 0/59 (0%)

Query  1   MEKYHIEKDIAQYIKREFDSRKGATWHCVVGRNFGSFVTHETKHFIYFYLGHCAILLFK  59
           +EKY+IEKDIA YIK+EFD + G TWHC+VG+NFGS+VTHET HFIYFY+G+ AILLFK
Sbjct  25  LEKYNIEKDIAAYIKKEFDKKYGPTWHCIVGKNFGSYVTHETGHFIYFYIGNLAILLFK  83



Lambda      K        H        a         alpha
   0.330    0.142    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00000809

Length=61
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1         104     4e-32


>CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1.  
Length=83

 Score = 104 bits (261),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 44/59 (75%), Positives = 53/59 (90%), Gaps = 0/59 (0%)

Query  1   MEKYHIEKDIAQYIKREFDSRKGATWHCVVGRNFGSFVTHETKHFIYFYLGHCAILLFK  59
           +EKY+IEKDIA YIK+EFD + G TWHC+VG+NFGS+VTHET HFIYFY+G+ AILLFK
Sbjct  25  LEKYNIEKDIAAYIKKEFDKKYGPTWHCIVGKNFGSYVTHETGHFIYFYIGNLAILLFK  83



Lambda      K        H        a         alpha
   0.330    0.142    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00000810

Length=77
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1         131     1e-42


>CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1.  
Length=83

 Score = 131 bits (332),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 56/75 (75%), Positives = 67/75 (89%), Gaps = 0/75 (0%)

Query  1   MTEEMQQEAVEVATEAMEKYHIEKDIAQYIKREFDSRKGATWHCVVGRNFGSFVTHETKH  60
           M EEMQQEA+E+A EA+EKY+IEKDIA YIK+EFD + G TWHC+VG+NFGS+VTHET H
Sbjct  9   MPEEMQQEAIEIAQEALEKYNIEKDIAAYIKKEFDKKYGPTWHCIVGKNFGSYVTHETGH  68

Query  61  FIYFYLGHCAILLFK  75
           FIYFY+G+ AILLFK
Sbjct  69  FIYFYIGNLAILLFK  83



Lambda      K        H        a         alpha
   0.325    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00000811

Length=77
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1         131     1e-42


>CDD:460119 pfam01221, Dynein_light, Dynein light chain type 1.  
Length=83

 Score = 131 bits (332),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 56/75 (75%), Positives = 67/75 (89%), Gaps = 0/75 (0%)

Query  1   MTEEMQQEAVEVATEAMEKYHIEKDIAQYIKREFDSRKGATWHCVVGRNFGSFVTHETKH  60
           M EEMQQEA+E+A EA+EKY+IEKDIA YIK+EFD + G TWHC+VG+NFGS+VTHET H
Sbjct  9   MPEEMQQEAIEIAQEALEKYNIEKDIAAYIKKEFDKKYGPTWHCIVGKNFGSYVTHETGH  68

Query  61  FIYFYLGHCAILLFK  75
           FIYFY+G+ AILLFK
Sbjct  69  FIYFYIGNLAILLFK  83



Lambda      K        H        a         alpha
   0.325    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00006826

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.147    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00000812

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00006827

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00000815

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00000819

Length=335


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00006828

Length=261


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00006829

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00000816

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00000817

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00000818

Length=335


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0593    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00000820

Length=279


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00000821

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00000822

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00000823

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427582 pfam03911, Sec61_beta, Sec61beta family. This family c...  61.2    1e-14


>CDD:427582 pfam03911, Sec61_beta, Sec61beta family.  This family consists 
of homologs of Sec61beta - a component of the Sec61/SecYEG 
protein secretory system. The domain is found in eukaryotes 
and archaea and is possibly homologous to the bacterial SecG. 
It consists of a single putative transmembrane helix, preceded 
by a short stretch containing various charged residues; 
this arrangement may help determine orientation in the cell 
membrane.
Length=38

 Score = 61.2 bits (150),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 28/35 (80%), Gaps = 0/35 (0%)

Query  86   TMLKLYTDESPGLRVDPVVVLVLSLGFIFSVVGLH  120
             +L+ Y +++PG+++DP VVLVLSL FI SV+ LH
Sbjct  1    GLLRYYEEDAPGIKIDPKVVLVLSLAFIASVILLH  35



Lambda      K        H        a         alpha
   0.312    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00000824

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427582 pfam03911, Sec61_beta, Sec61beta family. This family c...  61.2    1e-14


>CDD:427582 pfam03911, Sec61_beta, Sec61beta family.  This family consists 
of homologs of Sec61beta - a component of the Sec61/SecYEG 
protein secretory system. The domain is found in eukaryotes 
and archaea and is possibly homologous to the bacterial SecG. 
It consists of a single putative transmembrane helix, preceded 
by a short stretch containing various charged residues; 
this arrangement may help determine orientation in the cell 
membrane.
Length=38

 Score = 61.2 bits (150),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 20/38 (53%), Positives = 31/38 (82%), Gaps = 0/38 (0%)

Query  82   TMLKLYTDESPGLRVDPVVVLVLSLGFIFSVVGLHVIA  119
             +L+ Y +++PG+++DP VVLVLSL FI SV+ LH++A
Sbjct  1    GLLRYYEEDAPGIKIDPKVVLVLSLAFIASVILLHILA  38



Lambda      K        H        a         alpha
   0.310    0.126    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00000825

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427582 pfam03911, Sec61_beta, Sec61beta family. This family c...  61.6    1e-14


>CDD:427582 pfam03911, Sec61_beta, Sec61beta family.  This family consists 
of homologs of Sec61beta - a component of the Sec61/SecYEG 
protein secretory system. The domain is found in eukaryotes 
and archaea and is possibly homologous to the bacterial SecG. 
It consists of a single putative transmembrane helix, preceded 
by a short stretch containing various charged residues; 
this arrangement may help determine orientation in the cell 
membrane.
Length=38

 Score = 61.6 bits (151),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 20/38 (53%), Positives = 31/38 (82%), Gaps = 0/38 (0%)

Query  86   TMLKLYTDESPGLRVDPVVVLVLSLGFIFSVVGLHVIA  123
             +L+ Y +++PG+++DP VVLVLSL FI SV+ LH++A
Sbjct  1    GLLRYYEEDAPGIKIDPKVVLVLSLAFIASVILLHILA  38



Lambda      K        H        a         alpha
   0.311    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00000826

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00000827

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.116    0.318    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00000828

Length=1015


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1301190044


Query= TCONS_00000829

Length=902


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1158459798


Query= TCONS_00000830

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00000831

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00000832

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00006830

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00000833

Length=711
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431292 pfam10446, DUF2457, Protein of unknown function (DUF24...  474     2e-162


>CDD:431292 pfam10446, DUF2457, Protein of unknown function (DUF2457).  This 
is a family of uncharacterized proteins.
Length=459

 Score = 474 bits (1221),  Expect = 2e-162, Method: Composition-based stats.
 Identities = 226/484 (47%), Positives = 285/484 (59%), Gaps = 74/484 (15%)

Query  277  RFHEFASSVSEDDEWVNKVGEFTEKITMTDCMRKEIAIRKLG------------------  318
            RFHEFASS  E+D+W+ +  ++  K+T+ D ++KE AIRKLG                  
Sbjct  1    RFHEFASSEEEEDDWIRQDTDYKRKLTINDTLKKENAIRKLGEEAEEEALEEEEEAEDDE  60

Query  319  --------EEAEEEALEEEDEEEDEDDADSTIHDFSS--DDGNESDNEAGFADSDDESDD  368
                    ++ +E+  +++DEE+++DD DST+HDF    DDGNE+DNEAGFADSDD+ +D
Sbjct  61   DDEDDDDDDDDDEDDDDDDDEEDEDDDDDSTVHDFDDDADDGNETDNEAGFADSDDDDED  120

Query  369  GSEYEFWAPTAITTATSPQALDSARQALERRGS--NTSLDSVTD---DPHKKWPPALAWK  423
               Y FW P+A T ATS Q LD  R  L RR S   +S  S+         + PP    K
Sbjct  121  SD-YVFWTPSATTAATSVQHLDQGRTPLSRRLSVSESSDSSLNSRGSSRRSRRPPRRRRK  179

Query  424  ANGRSPFKPPPVKMRPGTPNLPDSTDFVCGTLDEDRPLEVAYKSCIEQRRLSKQVIIPQD  483
                    P P K+RPGTP LPDSTDFVCGTLDEDRPLE AY SC+E RR  K + IPQD
Sbjct  180  --------PRPRKIRPGTPELPDSTDFVCGTLDEDRPLEEAYISCLEARRREKHIPIPQD  231

Query  484  IDPSFPTSDIDDQDDLEEDEMELSF------------RADELTRGRTGGDSVRQHSPRLS  531
            IDPSFPTSD +D+DD +E E                   D   RGR  G   R+ SPR S
Sbjct  232  IDPSFPTSDPEDEDDDDEVENPHGESDDHVWLHGEMEDLDHELRGRRKGRR-RKKSPRHS  290

Query  532  PRRMMSPPPRRYSRMS--PRRLRSPPPPVKMG-PTQSGDGVSDDQLPSRRPQGVNISELV  588
            P+R+ SPPP R  R+   PR+L    PP ++  P  +         P + P+GVN   L 
Sbjct  291  PKRLRSPPPPRPKRLRSPPRKLFDRRPPRRLRSPPPTARTSPTAASPRQGPRGVNFKGLA  350

Query  589  QRPLMTRTKSLPRTPNPFFTSLDKAHRWSSIADVQESPECGSSCTREVHTRGPIDIVEGL  648
            QRP +T TKSLPRTPNPFF  L+           + S E  +S +R+ H RG IDIV+GL
Sbjct  351  QRPGLTHTKSLPRTPNPFFHRLE---------PRRASAEREASRSRDTHVRGAIDIVKGL  401

Query  649  EKKRQKRREKFWRQHCRKAAKEQM-ERRPIPGKGAERMKELGLEVAERFRAYGVGHDAQL  707
            EKKRQ+R+EKFWR+HCR+A KEQ+ ERRP PGKGAERM+ELGL +A +  A         
Sbjct  402  EKKRQRRKEKFWRKHCRRARKEQIPERRPQPGKGAERMRELGLLMAGKVDA------GNY  455

Query  708  VLSV  711
            VLSV
Sbjct  456  VLSV  459



Lambda      K        H        a         alpha
   0.311    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 911420220


Query= TCONS_00006832

Length=74
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  95.0    2e-27


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 95.0 bits (237),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 33/74 (45%), Positives = 41/74 (55%), Gaps = 9/74 (12%)

Query  1    MEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMR  60
             EELA  P LIL NK D P A+SE E+R  LGL++            RP E+  CS V  
Sbjct  96   EEELADAPLLILANKQDLPGAMSEAEIRELLGLHELKD---------RPWEIQGCSAVTG  146

Query  61   QGYGEGIRWLSQYV  74
            +G  EG+ WLS Y+
Sbjct  147  EGLDEGLDWLSNYI  160



Lambda      K        H        a         alpha
   0.321    0.142    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00006831

Length=80
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  75.0    2e-19


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 75.0 bits (185),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 27/62 (44%), Positives = 33/62 (53%), Gaps = 9/62 (15%)

Query  1    MEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMR  60
             EELA  P LIL NK D P A+SE E+R  LGL++            RP E+  CS V  
Sbjct  96   EEELADAPLLILANKQDLPGAMSEAEIRELLGLHELKD---------RPWEIQGCSAVTG  146

Query  61   QG  62
            +G
Sbjct  147  EG  148



Lambda      K        H        a         alpha
   0.325    0.144    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00006834

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  247     2e-85


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 247 bits (632),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 101/169 (60%), Gaps = 9/169 (5%)

Query  21   AKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRL  80
             ++L LGLDNAGKTT+L+ LK   + T  PT     E +   N +FT +D+GG +  R L
Sbjct  1    MRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKFTVWDVGGQESLRPL  60

Query  81   WKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSED  140
            W++YFP    ++F+VD+ D +R  E+K EL ALL  EELA  P LIL NK D P A+SE 
Sbjct  61   WRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEA  120

Query  141  ELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYGEGIRWLSQYV  189
            E+R  LGL++            RP E+  CS V  +G  EG+ WLS Y+
Sbjct  121  EIRELLGLHELKD---------RPWEIQGCSAVTGEGLDEGLDWLSNYI  160



Lambda      K        H        a         alpha
   0.322    0.140    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00006833

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  185     8e-62


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 185 bits (472),  Expect = 8e-62, Method: Composition-based stats.
 Identities = 57/132 (43%), Positives = 78/132 (59%), Gaps = 9/132 (7%)

Query  14   ELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAME  73
             +   N +FT +D+GG +  R LW++YFP    ++F+VD+ D +R  E+K EL ALL  E
Sbjct  38   TVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEE  97

Query  74   ELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQG  133
            ELA  P LIL NK D P A+SE E+R  LGL++            RP E+  CS V  +G
Sbjct  98   ELADAPLLILANKQDLPGAMSEAEIRELLGLHELKD---------RPWEIQGCSAVTGEG  148

Query  134  YGEGIRWLSQYV  145
              EG+ WLS Y+
Sbjct  149  LDEGLDWLSNYI  160



Lambda      K        H        a         alpha
   0.321    0.139    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00000839

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  213     1e-72


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 213 bits (544),  Expect = 1e-72, Method: Composition-based stats.
 Identities = 63/151 (42%), Positives = 85/151 (56%), Gaps = 9/151 (6%)

Query  1    MLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAK  60
             LK   + T  PT     E +   N +FT +D+GG +  R LW++YFP    ++F+VD+ 
Sbjct  19   KLKLGEIVTTIPTIGFNVETVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSA  78

Query  61   DHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGKGKVP  120
            D +R  E+K EL ALL  EELA  P LIL NK D P A+SE E+R  LGL++        
Sbjct  79   DRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEAEIRELLGLHELKD-----  133

Query  121  LEGIRPIEVFMCSVVMRQGYGEGIRWLSQYV  151
                RP E+  CS V  +G  EG+ WLS Y+
Sbjct  134  ----RPWEIQGCSAVTGEGLDEGLDWLSNYI  160



Lambda      K        H        a         alpha
   0.320    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00000835

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  247     2e-85


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 247 bits (632),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 101/169 (60%), Gaps = 9/169 (5%)

Query  21   AKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRL  80
             ++L LGLDNAGKTT+L+ LK   + T  PT     E +   N +FT +D+GG +  R L
Sbjct  1    MRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKFTVWDVGGQESLRPL  60

Query  81   WKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSED  140
            W++YFP    ++F+VD+ D +R  E+K EL ALL  EELA  P LIL NK D P A+SE 
Sbjct  61   WRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEA  120

Query  141  ELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYGEGIRWLSQYV  189
            E+R  LGL++            RP E+  CS V  +G  EG+ WLS Y+
Sbjct  121  EIRELLGLHELKD---------RPWEIQGCSAVTGEGLDEGLDWLSNYI  160



Lambda      K        H        a         alpha
   0.322    0.140    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00006835

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  247     2e-85


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 247 bits (632),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 101/169 (60%), Gaps = 9/169 (5%)

Query  21   AKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRL  80
             ++L LGLDNAGKTT+L+ LK   + T  PT     E +   N +FT +D+GG +  R L
Sbjct  1    MRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKFTVWDVGGQESLRPL  60

Query  81   WKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSED  140
            W++YFP    ++F+VD+ D +R  E+K EL ALL  EELA  P LIL NK D P A+SE 
Sbjct  61   WRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEA  120

Query  141  ELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYGEGIRWLSQYV  189
            E+R  LGL++            RP E+  CS V  +G  EG+ WLS Y+
Sbjct  121  EIRELLGLHELKD---------RPWEIQGCSAVTGEGLDEGLDWLSNYI  160



Lambda      K        H        a         alpha
   0.322    0.140    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00000834

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  227     7e-78


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 227 bits (581),  Expect = 7e-78, Method: Composition-based stats.
 Identities = 69/157 (44%), Positives = 93/157 (59%), Gaps = 9/157 (6%)

Query  21   AKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRL  80
             ++L LGLDNAGKTT+L+ LK   + T  PT     E +   N +FT +D+GG +  R L
Sbjct  1    MRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKFTVWDVGGQESLRPL  60

Query  81   WKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSED  140
            W++YFP    ++F+VD+ D +R  E+K EL ALL  EELA  P LIL NK D P A+SE 
Sbjct  61   WRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEA  120

Query  141  ELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQG  177
            E+R  LGL++            RP E+  CS V  +G
Sbjct  121  EIRELLGLHELKD---------RPWEIQGCSAVTGEG  148



Lambda      K        H        a         alpha
   0.322    0.139    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00006836

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  224     8e-77


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 224 bits (574),  Expect = 8e-77, Method: Composition-based stats.
 Identities = 69/157 (44%), Positives = 93/157 (59%), Gaps = 9/157 (6%)

Query  21   AKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQGRRL  80
             ++L LGLDNAGKTT+L+ LK   + T  PT     E +   N +FT +D+GG +  R L
Sbjct  1    MRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKFTVWDVGGQESLRPL  60

Query  81   WKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSED  140
            W++YFP    ++F+VD+ D +R  E+K EL ALL  EELA  P LIL NK D P A+SE 
Sbjct  61   WRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEA  120

Query  141  ELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQG  177
            E+R  LGL++            RP E+  CS V  +G
Sbjct  121  EIRELLGLHELKD---------RPWEIQGCSAVTGEG  148



Lambda      K        H        a         alpha
   0.322    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00000836

Length=74
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  95.0    2e-27


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 95.0 bits (237),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 33/74 (45%), Positives = 41/74 (55%), Gaps = 9/74 (12%)

Query  1    MEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMR  60
             EELA  P LIL NK D P A+SE E+R  LGL++            RP E+  CS V  
Sbjct  96   EEELADAPLLILANKQDLPGAMSEAEIRELLGLHELKD---------RPWEIQGCSAVTG  146

Query  61   QGYGEGIRWLSQYV  74
            +G  EG+ WLS Y+
Sbjct  147  EGLDEGLDWLSNYI  160



Lambda      K        H        a         alpha
   0.321    0.142    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00000837

Length=74
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  95.0    2e-27


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 95.0 bits (237),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 33/74 (45%), Positives = 41/74 (55%), Gaps = 9/74 (12%)

Query  1    MEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMR  60
             EELA  P LIL NK D P A+SE E+R  LGL++            RP E+  CS V  
Sbjct  96   EEELADAPLLILANKQDLPGAMSEAEIRELLGLHELKD---------RPWEIQGCSAVTG  146

Query  61   QGYGEGIRWLSQYV  74
            +G  EG+ WLS Y+
Sbjct  147  EGLDEGLDWLSNYI  160



Lambda      K        H        a         alpha
   0.321    0.142    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00000838

Length=144
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  169     1e-55


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 169 bits (431),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 52/124 (42%), Positives = 71/124 (57%), Gaps = 9/124 (7%)

Query  3    PASEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDAL  62
               E +   N +FT +D+GG +  R LW++YFP    ++F+VD+ D +R  E+K EL AL
Sbjct  34   FNVETVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHAL  93

Query  63   LAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVV  122
            L  EELA  P LIL NK D P A+SE E+R  LGL++            RP E+  CS V
Sbjct  94   LNEEELADAPLLILANKQDLPGAMSEAEIRELLGLHELKD---------RPWEIQGCSAV  144

Query  123  MRQG  126
              +G
Sbjct  145  TGEG  148



Lambda      K        H        a         alpha
   0.323    0.141    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00006837

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  247     2e-85


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 247 bits (632),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 101/169 (60%), Gaps = 9/169 (5%)

Query  21   AKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRL  80
             ++L LGLDNAGKTT+L+ LK   + T  PT     E +   N +FT +D+GG +  R L
Sbjct  1    MRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKFTVWDVGGQESLRPL  60

Query  81   WKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSED  140
            W++YFP    ++F+VD+ D +R  E+K EL ALL  EELA  P LIL NK D P A+SE 
Sbjct  61   WRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEA  120

Query  141  ELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYGEGIRWLSQYV  189
            E+R  LGL++            RP E+  CS V  +G  EG+ WLS Y+
Sbjct  121  EIRELLGLHELKD---------RPWEIQGCSAVTGEGLDEGLDWLSNYI  160



Lambda      K        H        a         alpha
   0.322    0.140    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00000842

Length=695


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 887823580


Query= TCONS_00000841

Length=695


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 887823580


Query= TCONS_00006839

Length=695


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 887823580


Query= TCONS_00006838

Length=695


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 887823580


Query= TCONS_00000843

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00006840

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00000844

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00000845

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00000846

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00000847

Length=755
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF333...  212     1e-65
CDD:396341 pfam01734, Patatin, Patatin-like phospholipase. This f...  95.4    5e-23


>CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF3336).  This 
family of proteins are functionally uncharacterized. This 
family is found in bacteria and eukaryotes. This presumed domain 
is typically between 143 to 227 amino acids in length.
Length=139

 Score = 212 bits (542),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 100/154 (65%), Gaps = 15/154 (10%)

Query  158  FVTWRGKREQLRRELSMQTNYQDWLKAAQALDTYLGNLKWKETDEYAYYDHLTINKVVAQ  217
            FVTWRG+R++LR++L    +Y++W +AA+ LD  LGN +WKE DE AYYD+  + +V++Q
Sbjct  1    FVTWRGRRKRLRKKLRNAKSYEEWKEAAKELDELLGNDEWKENDESAYYDYKLVRRVLSQ  60

Query  218  LKQTRKAAEMEMQNGRPGLSDPPAVEELCFLLEACVKNNFAGVENPRLYSETYSGTKDLV  277
            L++ R+  +               +  L FLL  C+K NFAG+ENPRLYS TY GTK+L+
Sbjct  61   LRRAREEED---------------LRALLFLLRTCLKRNFAGIENPRLYSHTYYGTKNLI  105

Query  278  QEYIDEVHSCIRLVLDSKQISNEDKYQFFKHLDT  311
            +EYIDEV   +  + +S  +S E+K +FFK    
Sbjct  106  EEYIDEVEKSLEYLAESPSLSLEEKLEFFKETRK  139


>CDD:396341 pfam01734, Patatin, Patatin-like phospholipase.  This family 
consists of various patatin glycoproteins from plants. The patatin 
protein accounts for up to 40% of the total soluble protein 
in potato tubers. Patatin is a storage protein but it 
also has the enzymatic activity of lipid acyl hydrolase, catalyzing 
the cleavage of fatty acids from membrane lipids. Members 
of this family have been found also in vertebrates.
Length=190

 Score = 95.4 bits (237),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 81/205 (40%), Gaps = 30/205 (15%)

Query  318  LCLSGGATFAYYHFGVIRALLDNDVLPEIITGTSGGALVAALVATRTD-----EELKQLL  372
            L LSGG     YH GV++AL +  +  ++I+GTS GA+ AAL+A   D     + L +L 
Sbjct  1    LVLSGGGARGAYHLGVLKALGEAGIRFDVISGTSAGAINAALLALGRDPEEIEDLLLELD  60

Query  373  VPALAHRIRACHEGFTTWVRRWWRTGARFDTLDWARQCSWFCR--GSTTFREAYERTGRI  430
            +      IR         +R     G  FD            +  G  T  E   R   +
Sbjct  61   LNLFLSLIRKRALSLLALLRGLIGEGGLFDGDALRE---LLRKLLGDLTLEELAARLSLL  117

Query  431  LNVSCVPSDPHSPTILANYLT-------SPDCVIWSAVLASAAVPGILNPVVLMTKKRDG  483
            L V+         T L              D  +  AVLAS+A+PG+  PV L       
Sbjct  118  LVVALRALLTVISTALGTRARILLPDDLDDDEDLADAVLASSALPGVFPPVRL-------  170

Query  484  TLAPYSFGHKWKDGSLRTDIPIKAL  508
                   G  + DG L  ++P++A 
Sbjct  171  ------DGELYVDGGLVDNVPVEAA  189



Lambda      K        H        a         alpha
   0.321    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 961855472


Query= TCONS_00000848

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0811    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00000849

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.131    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00006841

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.131    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00000850

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF333...  210     3e-67
CDD:396341 pfam01734, Patatin, Patatin-like phospholipase. This f...  95.4    2e-23


>CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF3336).  This 
family of proteins are functionally uncharacterized. This 
family is found in bacteria and eukaryotes. This presumed domain 
is typically between 143 to 227 amino acids in length.
Length=139

 Score = 210 bits (537),  Expect = 3e-67, Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 100/154 (65%), Gaps = 15/154 (10%)

Query  115  FVTWRGKREQLRRELSMQTNYQDWLKAAQALDTYLGNLKWKETDEYAYYDHLTINKVVAQ  174
            FVTWRG+R++LR++L    +Y++W +AA+ LD  LGN +WKE DE AYYD+  + +V++Q
Sbjct  1    FVTWRGRRKRLRKKLRNAKSYEEWKEAAKELDELLGNDEWKENDESAYYDYKLVRRVLSQ  60

Query  175  LKQTRKAAEMEMQNGRPGLSDPPAVEELCFLLEACVKNNFAGVENPRLYSETYSGTKDLV  234
            L++ R+  +               +  L FLL  C+K NFAG+ENPRLYS TY GTK+L+
Sbjct  61   LRRAREEED---------------LRALLFLLRTCLKRNFAGIENPRLYSHTYYGTKNLI  105

Query  235  QEYIDEVHSCIRLVLDSKQISNEDKYQFFKHLDT  268
            +EYIDEV   +  + +S  +S E+K +FFK    
Sbjct  106  EEYIDEVEKSLEYLAESPSLSLEEKLEFFKETRK  139


>CDD:396341 pfam01734, Patatin, Patatin-like phospholipase.  This family 
consists of various patatin glycoproteins from plants. The patatin 
protein accounts for up to 40% of the total soluble protein 
in potato tubers. Patatin is a storage protein but it 
also has the enzymatic activity of lipid acyl hydrolase, catalyzing 
the cleavage of fatty acids from membrane lipids. Members 
of this family have been found also in vertebrates.
Length=190

 Score = 95.4 bits (237),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 81/205 (40%), Gaps = 30/205 (15%)

Query  275  LCLSGGATFAYYHFGVIRALLDNDVLPEIITGTSGGALVAALVATRTD-----EELKQLL  329
            L LSGG     YH GV++AL +  +  ++I+GTS GA+ AAL+A   D     + L +L 
Sbjct  1    LVLSGGGARGAYHLGVLKALGEAGIRFDVISGTSAGAINAALLALGRDPEEIEDLLLELD  60

Query  330  VPALAHRIRACHEGFTTWVRRWWRTGARFDTLDWARQCSWFCR--GSTTFREAYERTGRI  387
            +      IR         +R     G  FD            +  G  T  E   R   +
Sbjct  61   LNLFLSLIRKRALSLLALLRGLIGEGGLFDGDALRE---LLRKLLGDLTLEELAARLSLL  117

Query  388  LNVSCVPSDPHSPTILANYLT-------SPDCVIWSAVLASAAVPGILNPVVLMTKKRDG  440
            L V+         T L              D  +  AVLAS+A+PG+  PV L       
Sbjct  118  LVVALRALLTVISTALGTRARILLPDDLDDDEDLADAVLASSALPGVFPPVRL-------  170

Query  441  TLAPYSFGHKWKDGSLRTDIPIKAL  465
                   G  + DG L  ++P++A 
Sbjct  171  ------DGELYVDGGLVDNVPVEAA  189



Lambda      K        H        a         alpha
   0.322    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00006843

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00000851

Length=612


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 777102560


Query= TCONS_00000852

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00000853

Length=602


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 762158280


Query= TCONS_00000855

Length=443


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00006844

Length=612


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 777102560


Query= TCONS_00000854

Length=612


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 777102560


Query= TCONS_00000856

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00000857

Length=602


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 762158280


Query= TCONS_00000858

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00006845

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00000859

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462067 pfam07019, Rab5ip, Rab5-interacting protein (Rab5ip). ...  57.2    2e-12


>CDD:462067 pfam07019, Rab5ip, Rab5-interacting protein (Rab5ip).  This family 
consists of several Rab5-interacting protein (RIP5 or 
Rab5ip ) sequences. The ras-related GTPase rab5 is rate-limiting 
for homotypic early endosome fusion. Rab5ip represents 
a novel rab5 interacting protein that may function on endocytic 
vesicles as a receptor for rab5-GDP and participate in the 
activation of rab5.
Length=79

 Score = 57.2 bits (139),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 28/106 (26%)

Query  26   VLSQLHSLTSFLLGLTAGILALQSATGFAFYLLGTVLVSGLFHLLVLKRSGGKGAGVFFP  85
            VL  +  LT+ L G+ AGIL L    GF F+LL ++LVS L++ L   + GG     +F 
Sbjct  1    VLYWIRQLTALLAGIVAGILGLTGLLGFLFFLLFSLLVSLLYYAL---KCGGFPKKEYFG  57

Query  86   GAGGEIAGIDERGLVKGNGGRRGAWRDVWLGGGVLGEALSGFILGW  131
            G                       W +++  G  L   L+GF+L W
Sbjct  58   G-----------------------WWELFTEG--LFTGLAGFVLTW  78



Lambda      K        H        a         alpha
   0.322    0.144    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00000860

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain. This family...  174     6e-55
CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The cen...  89.5    1e-23


>CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain.  This family consists 
of the C terminal region of the DnaJ protein. It is always 
found associated with pfam00226 and pfam00684. DnaJ is a 
chaperone associated with the Hsp70 heat-shock system involved 
in protein folding and renaturation after stress. The two 
C-terminal domains CTDI and CTDII, both incorporated in this 
family are necessary for maintaining the J-domains in their 
specific relative positions. Structural analysis of Structure 
1nlt shows that pfam00684 is nested within this DnaJ C-terminal 
region.
Length=213

 Score = 174 bits (444),  Expect = 6e-55, Method: Composition-based stats.
 Identities = 64/186 (34%), Positives = 92/186 (49%), Gaps = 8/186 (4%)

Query  69   IHHVHKVSLEDIYRGKVSKLALQKSVICPGCDGRGGKEGAVKSCTGCNGSGMKTMMRQMG  128
            + +  +++LE+ Y G   K+ + ++VIC  C G G K G       C G G +   +   
Sbjct  1    LEYELELTLEEAYFGCTKKIKITRNVICDTCGGSGAKPGTSPKTCPCCGGGGQVRRQFG-  59

Query  129  PMIQRFQTVCPDCNGEGEIIREKDRCKRCNGKKTVVERKVLHVHVDKGVKNGHKIEFRGE  188
                 F + C  C   G   +  D+C +C G   VVE+K L V +  GV +G +I  RGE
Sbjct  60   -----FFSTCTCCPCCGGGGKIIDKCCKCCGGGGVVEKKTLEVKIPAGVDDGQRIRLRGE  114

Query  189  GDQMP-GVLPGDVVFEIEQKPHPRFQRKDDDLFYHAEIDLLTALAGGSINIEHLDDRWLT  247
            GD    G  PGD+   I  KPHP F+R  DDL+    I L  AL GG+I +  LD + + 
Sbjct  115  GDAGENGGPPGDLYVVIRVKPHPVFRRDGDDLYCTVPISLTEALLGGTIEVPTLDGK-VK  173

Query  248  VNIVPG  253
            + I  G
Sbjct  174  LKIPAG  179


>CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain.  The central cysteine-rich 
(CR) domain of DnaJ proteins contains four repeats 
of the motif CXXCXGXG where X is any amino acid. The isolated 
cysteine rich domain folds in zinc dependent fashion. 
Each set of two repeats binds one unit of zinc. Although this 
domain has been implicated in substrate binding, no evidence 
of specific interaction between the isolated DNAJ cysteine 
rich domain and various hydrophobic peptides has been found.
Length=65

 Score = 89.5 bits (223),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 38/67 (57%), Gaps = 3/67 (4%)

Query  96   CPGCDGRGGKEGA-VKSCTGCNGSGMKTMMRQMGPMIQRFQTVCPDCNGEGEIIREKDRC  154
            CP C+G G K G    +C  C G+G    ++Q GP   + Q+ CP C G G+II  KD C
Sbjct  1    CPTCNGSGAKPGTKPTTCPTCGGTGQVRRVQQTGPGFFQMQSTCPTCGGTGKII--KDPC  58

Query  155  KRCNGKK  161
            K+C GK 
Sbjct  59   KKCKGKG  65



Lambda      K        H        a         alpha
   0.322    0.143    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00000861

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain. This family...  174     6e-55
CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The cen...  89.5    1e-23


>CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain.  This family consists 
of the C terminal region of the DnaJ protein. It is always 
found associated with pfam00226 and pfam00684. DnaJ is a 
chaperone associated with the Hsp70 heat-shock system involved 
in protein folding and renaturation after stress. The two 
C-terminal domains CTDI and CTDII, both incorporated in this 
family are necessary for maintaining the J-domains in their 
specific relative positions. Structural analysis of Structure 
1nlt shows that pfam00684 is nested within this DnaJ C-terminal 
region.
Length=213

 Score = 174 bits (444),  Expect = 6e-55, Method: Composition-based stats.
 Identities = 64/186 (34%), Positives = 92/186 (49%), Gaps = 8/186 (4%)

Query  69   IHHVHKVSLEDIYRGKVSKLALQKSVICPGCDGRGGKEGAVKSCTGCNGSGMKTMMRQMG  128
            + +  +++LE+ Y G   K+ + ++VIC  C G G K G       C G G +   +   
Sbjct  1    LEYELELTLEEAYFGCTKKIKITRNVICDTCGGSGAKPGTSPKTCPCCGGGGQVRRQFG-  59

Query  129  PMIQRFQTVCPDCNGEGEIIREKDRCKRCNGKKTVVERKVLHVHVDKGVKNGHKIEFRGE  188
                 F + C  C   G   +  D+C +C G   VVE+K L V +  GV +G +I  RGE
Sbjct  60   -----FFSTCTCCPCCGGGGKIIDKCCKCCGGGGVVEKKTLEVKIPAGVDDGQRIRLRGE  114

Query  189  GDQMP-GVLPGDVVFEIEQKPHPRFQRKDDDLFYHAEIDLLTALAGGSINIEHLDDRWLT  247
            GD    G  PGD+   I  KPHP F+R  DDL+    I L  AL GG+I +  LD + + 
Sbjct  115  GDAGENGGPPGDLYVVIRVKPHPVFRRDGDDLYCTVPISLTEALLGGTIEVPTLDGK-VK  173

Query  248  VNIVPG  253
            + I  G
Sbjct  174  LKIPAG  179


>CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain.  The central cysteine-rich 
(CR) domain of DnaJ proteins contains four repeats 
of the motif CXXCXGXG where X is any amino acid. The isolated 
cysteine rich domain folds in zinc dependent fashion. 
Each set of two repeats binds one unit of zinc. Although this 
domain has been implicated in substrate binding, no evidence 
of specific interaction between the isolated DNAJ cysteine 
rich domain and various hydrophobic peptides has been found.
Length=65

 Score = 89.5 bits (223),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 38/67 (57%), Gaps = 3/67 (4%)

Query  96   CPGCDGRGGKEGA-VKSCTGCNGSGMKTMMRQMGPMIQRFQTVCPDCNGEGEIIREKDRC  154
            CP C+G G K G    +C  C G+G    ++Q GP   + Q+ CP C G G+II  KD C
Sbjct  1    CPTCNGSGAKPGTKPTTCPTCGGTGQVRRVQQTGPGFFQMQSTCPTCGGTGKII--KDPC  58

Query  155  KRCNGKK  161
            K+C GK 
Sbjct  59   KKCKGKG  65



Lambda      K        H        a         alpha
   0.322    0.143    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00006846

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460112 pfam01208, URO-D, Uroporphyrinogen decarboxylase (URO-D)   299     1e-101


>CDD:460112 pfam01208, URO-D, Uroporphyrinogen decarboxylase (URO-D).  
Length=341

 Score = 299 bits (767),  Expect = 1e-101, Method: Composition-based stats.
 Identities = 109/291 (37%), Positives = 157/291 (54%), Gaps = 31/291 (11%)

Query  1    MGMQVEMVDKKGPHFPEPLKSPDDGQYEKVMQKEVNVKEELDYVYKAITLTRHKLKGRVP  60
            MG +VE  + +GP    P++SP+D   E++   +  ++  L YV +AI L R +L G VP
Sbjct  81   MGCEVEFPEGEGPVVENPVRSPED--VERLEVPDPELEGRLPYVLEAIRLLRKELGGEVP  138

Query  61   LIGFCGAPWTLLCYMVEGGGTKLFVQSKMWIYKYPKESQALLQKIAEICVEYLALQVASG  120
            LIGF GAP+TL  Y+VE G  K     K  +YK P+    LL K+ + C+EYL  Q+ +G
Sbjct  139  LIGFAGAPFTLASYLVEKGFEKF----KKLMYKDPELVHRLLDKLTDACIEYLKAQIEAG  194

Query  121  AQLVQVFDSWAGEMSPAAFKTFSLPYLRYISANLPKRLDAMGLERVPMTVFAKGAW-YAL  179
            A  +Q+FDSWAG +SP  F+ F LPYL+ I   +  R         P+ +   G     L
Sbjct  195  ADAIQIFDSWAGLLSPEDFREFVLPYLKRIVDAVKGRGPG------PVILHICGNGTPIL  248

Query  180  EDLCESGYNVVGLDWLHDPAEAMQIAKGRVTIQGNADPGILYGSREAITEAVEVMVKGFQ  239
            ED+ ++G +VV LDW  D AEA +    RV +QGN DP +L GS E I + V+ +++   
Sbjct  249  EDMADTGADVVSLDWRVDLAEAARRVGDRVALQGNLDPAVLLGSPEEIRKEVKEILEKGI  308

Query  240  GGKQGWIANLGHGIFSSLVRTSSIRALTVTGITPFVKPDDLKFFFEEIHRL  290
             G +G+I NLGH                  GI P   P+++K   E +H  
Sbjct  309  DGPKGYILNLGH------------------GIPPGTPPENVKALVEAVHEY  341



Lambda      K        H        a         alpha
   0.321    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00006847

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460112 pfam01208, URO-D, Uroporphyrinogen decarboxylase (URO-D)   299     1e-101


>CDD:460112 pfam01208, URO-D, Uroporphyrinogen decarboxylase (URO-D).  
Length=341

 Score = 299 bits (767),  Expect = 1e-101, Method: Composition-based stats.
 Identities = 109/291 (37%), Positives = 157/291 (54%), Gaps = 31/291 (11%)

Query  1    MGMQVEMVDKKGPHFPEPLKSPDDGQYEKVMQKEVNVKEELDYVYKAITLTRHKLKGRVP  60
            MG +VE  + +GP    P++SP+D   E++   +  ++  L YV +AI L R +L G VP
Sbjct  81   MGCEVEFPEGEGPVVENPVRSPED--VERLEVPDPELEGRLPYVLEAIRLLRKELGGEVP  138

Query  61   LIGFCGAPWTLLCYMVEGGGTKLFVQSKMWIYKYPKESQALLQKIAEICVEYLALQVASG  120
            LIGF GAP+TL  Y+VE G  K     K  +YK P+    LL K+ + C+EYL  Q+ +G
Sbjct  139  LIGFAGAPFTLASYLVEKGFEKF----KKLMYKDPELVHRLLDKLTDACIEYLKAQIEAG  194

Query  121  AQLVQVFDSWAGEMSPAAFKTFSLPYLRYISANLPKRLDAMGLERVPMTVFAKGAW-YAL  179
            A  +Q+FDSWAG +SP  F+ F LPYL+ I   +  R         P+ +   G     L
Sbjct  195  ADAIQIFDSWAGLLSPEDFREFVLPYLKRIVDAVKGRGPG------PVILHICGNGTPIL  248

Query  180  EDLCESGYNVVGLDWLHDPAEAMQIAKGRVTIQGNADPGILYGSREAITEAVEVMVKGFQ  239
            ED+ ++G +VV LDW  D AEA +    RV +QGN DP +L GS E I + V+ +++   
Sbjct  249  EDMADTGADVVSLDWRVDLAEAARRVGDRVALQGNLDPAVLLGSPEEIRKEVKEILEKGI  308

Query  240  GGKQGWIANLGHGIFSSLVRTSSIRALTVTGITPFVKPDDLKFFFEEIHRL  290
             G +G+I NLGH                  GI P   P+++K   E +H  
Sbjct  309  DGPKGYILNLGH------------------GIPPGTPPENVKALVEAVHEY  341



Lambda      K        H        a         alpha
   0.321    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00006848

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460112 pfam01208, URO-D, Uroporphyrinogen decarboxylase (URO-D)   299     1e-101


>CDD:460112 pfam01208, URO-D, Uroporphyrinogen decarboxylase (URO-D).  
Length=341

 Score = 299 bits (767),  Expect = 1e-101, Method: Composition-based stats.
 Identities = 109/291 (37%), Positives = 157/291 (54%), Gaps = 31/291 (11%)

Query  1    MGMQVEMVDKKGPHFPEPLKSPDDGQYEKVMQKEVNVKEELDYVYKAITLTRHKLKGRVP  60
            MG +VE  + +GP    P++SP+D   E++   +  ++  L YV +AI L R +L G VP
Sbjct  81   MGCEVEFPEGEGPVVENPVRSPED--VERLEVPDPELEGRLPYVLEAIRLLRKELGGEVP  138

Query  61   LIGFCGAPWTLLCYMVEGGGTKLFVQSKMWIYKYPKESQALLQKIAEICVEYLALQVASG  120
            LIGF GAP+TL  Y+VE G  K     K  +YK P+    LL K+ + C+EYL  Q+ +G
Sbjct  139  LIGFAGAPFTLASYLVEKGFEKF----KKLMYKDPELVHRLLDKLTDACIEYLKAQIEAG  194

Query  121  AQLVQVFDSWAGEMSPAAFKTFSLPYLRYISANLPKRLDAMGLERVPMTVFAKGAW-YAL  179
            A  +Q+FDSWAG +SP  F+ F LPYL+ I   +  R         P+ +   G     L
Sbjct  195  ADAIQIFDSWAGLLSPEDFREFVLPYLKRIVDAVKGRGPG------PVILHICGNGTPIL  248

Query  180  EDLCESGYNVVGLDWLHDPAEAMQIAKGRVTIQGNADPGILYGSREAITEAVEVMVKGFQ  239
            ED+ ++G +VV LDW  D AEA +    RV +QGN DP +L GS E I + V+ +++   
Sbjct  249  EDMADTGADVVSLDWRVDLAEAARRVGDRVALQGNLDPAVLLGSPEEIRKEVKEILEKGI  308

Query  240  GGKQGWIANLGHGIFSSLVRTSSIRALTVTGITPFVKPDDLKFFFEEIHRL  290
             G +G+I NLGH                  GI P   P+++K   E +H  
Sbjct  309  DGPKGYILNLGH------------------GIPPGTPPENVKALVEAVHEY  341



Lambda      K        H        a         alpha
   0.321    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00000862

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain. This family...  174     6e-55
CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The cen...  89.5    1e-23


>CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain.  This family consists 
of the C terminal region of the DnaJ protein. It is always 
found associated with pfam00226 and pfam00684. DnaJ is a 
chaperone associated with the Hsp70 heat-shock system involved 
in protein folding and renaturation after stress. The two 
C-terminal domains CTDI and CTDII, both incorporated in this 
family are necessary for maintaining the J-domains in their 
specific relative positions. Structural analysis of Structure 
1nlt shows that pfam00684 is nested within this DnaJ C-terminal 
region.
Length=213

 Score = 174 bits (444),  Expect = 6e-55, Method: Composition-based stats.
 Identities = 64/186 (34%), Positives = 92/186 (49%), Gaps = 8/186 (4%)

Query  69   IHHVHKVSLEDIYRGKVSKLALQKSVICPGCDGRGGKEGAVKSCTGCNGSGMKTMMRQMG  128
            + +  +++LE+ Y G   K+ + ++VIC  C G G K G       C G G +   +   
Sbjct  1    LEYELELTLEEAYFGCTKKIKITRNVICDTCGGSGAKPGTSPKTCPCCGGGGQVRRQFG-  59

Query  129  PMIQRFQTVCPDCNGEGEIIREKDRCKRCNGKKTVVERKVLHVHVDKGVKNGHKIEFRGE  188
                 F + C  C   G   +  D+C +C G   VVE+K L V +  GV +G +I  RGE
Sbjct  60   -----FFSTCTCCPCCGGGGKIIDKCCKCCGGGGVVEKKTLEVKIPAGVDDGQRIRLRGE  114

Query  189  GDQMP-GVLPGDVVFEIEQKPHPRFQRKDDDLFYHAEIDLLTALAGGSINIEHLDDRWLT  247
            GD    G  PGD+   I  KPHP F+R  DDL+    I L  AL GG+I +  LD + + 
Sbjct  115  GDAGENGGPPGDLYVVIRVKPHPVFRRDGDDLYCTVPISLTEALLGGTIEVPTLDGK-VK  173

Query  248  VNIVPG  253
            + I  G
Sbjct  174  LKIPAG  179


>CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain.  The central cysteine-rich 
(CR) domain of DnaJ proteins contains four repeats 
of the motif CXXCXGXG where X is any amino acid. The isolated 
cysteine rich domain folds in zinc dependent fashion. 
Each set of two repeats binds one unit of zinc. Although this 
domain has been implicated in substrate binding, no evidence 
of specific interaction between the isolated DNAJ cysteine 
rich domain and various hydrophobic peptides has been found.
Length=65

 Score = 89.5 bits (223),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 38/67 (57%), Gaps = 3/67 (4%)

Query  96   CPGCDGRGGKEGA-VKSCTGCNGSGMKTMMRQMGPMIQRFQTVCPDCNGEGEIIREKDRC  154
            CP C+G G K G    +C  C G+G    ++Q GP   + Q+ CP C G G+II  KD C
Sbjct  1    CPTCNGSGAKPGTKPTTCPTCGGTGQVRRVQQTGPGFFQMQSTCPTCGGTGKII--KDPC  58

Query  155  KRCNGKK  161
            K+C GK 
Sbjct  59   KKCKGKG  65



Lambda      K        H        a         alpha
   0.322    0.143    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00006849

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00006850

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460112 pfam01208, URO-D, Uroporphyrinogen decarboxylase (URO-D)   299     1e-101


>CDD:460112 pfam01208, URO-D, Uroporphyrinogen decarboxylase (URO-D).  
Length=341

 Score = 299 bits (767),  Expect = 1e-101, Method: Composition-based stats.
 Identities = 109/291 (37%), Positives = 157/291 (54%), Gaps = 31/291 (11%)

Query  1    MGMQVEMVDKKGPHFPEPLKSPDDGQYEKVMQKEVNVKEELDYVYKAITLTRHKLKGRVP  60
            MG +VE  + +GP    P++SP+D   E++   +  ++  L YV +AI L R +L G VP
Sbjct  81   MGCEVEFPEGEGPVVENPVRSPED--VERLEVPDPELEGRLPYVLEAIRLLRKELGGEVP  138

Query  61   LIGFCGAPWTLLCYMVEGGGTKLFVQSKMWIYKYPKESQALLQKIAEICVEYLALQVASG  120
            LIGF GAP+TL  Y+VE G  K     K  +YK P+    LL K+ + C+EYL  Q+ +G
Sbjct  139  LIGFAGAPFTLASYLVEKGFEKF----KKLMYKDPELVHRLLDKLTDACIEYLKAQIEAG  194

Query  121  AQLVQVFDSWAGEMSPAAFKTFSLPYLRYISANLPKRLDAMGLERVPMTVFAKGAW-YAL  179
            A  +Q+FDSWAG +SP  F+ F LPYL+ I   +  R         P+ +   G     L
Sbjct  195  ADAIQIFDSWAGLLSPEDFREFVLPYLKRIVDAVKGRGPG------PVILHICGNGTPIL  248

Query  180  EDLCESGYNVVGLDWLHDPAEAMQIAKGRVTIQGNADPGILYGSREAITEAVEVMVKGFQ  239
            ED+ ++G +VV LDW  D AEA +    RV +QGN DP +L GS E I + V+ +++   
Sbjct  249  EDMADTGADVVSLDWRVDLAEAARRVGDRVALQGNLDPAVLLGSPEEIRKEVKEILEKGI  308

Query  240  GGKQGWIANLGHGIFSSLVRTSSIRALTVTGITPFVKPDDLKFFFEEIHRL  290
             G +G+I NLGH                  GI P   P+++K   E +H  
Sbjct  309  DGPKGYILNLGH------------------GIPPGTPPENVKALVEAVHEY  341



Lambda      K        H        a         alpha
   0.321    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00000864

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain. This family...  178     6e-56
CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The cen...  89.9    1e-23


>CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain.  This family consists 
of the C terminal region of the DnaJ protein. It is always 
found associated with pfam00226 and pfam00684. DnaJ is a 
chaperone associated with the Hsp70 heat-shock system involved 
in protein folding and renaturation after stress. The two 
C-terminal domains CTDI and CTDII, both incorporated in this 
family are necessary for maintaining the J-domains in their 
specific relative positions. Structural analysis of Structure 
1nlt shows that pfam00684 is nested within this DnaJ C-terminal 
region.
Length=213

 Score = 178 bits (455),  Expect = 6e-56, Method: Composition-based stats.
 Identities = 67/195 (34%), Positives = 95/195 (49%), Gaps = 10/195 (5%)

Query  36   IHHVHKVSLEDIYRGKVSKLALQKSVICPGCDGRGGKEGAVKSCTGCNGSGMKTMMRQMG  95
            + +  +++LE+ Y G   K+ + ++VIC  C G G K G       C G G +   +   
Sbjct  1    LEYELELTLEEAYFGCTKKIKITRNVICDTCGGSGAKPGTSPKTCPCCGGGGQVRRQFG-  59

Query  96   PMIQRFQTVCPDCNGEGEIIREKDRCKRCNGKKTVVERKVLHVHVDKGVKNGHKIEFRGE  155
                 F + C  C   G   +  D+C +C G   VVE+K L V +  GV +G +I  RGE
Sbjct  60   -----FFSTCTCCPCCGGGGKIIDKCCKCCGGGGVVEKKTLEVKIPAGVDDGQRIRLRGE  114

Query  156  GDQMP-GVLPGDVVFEIEQKPHPRFQRKDDDLFYHAEIDLLTALAGGSINIEHLDDRWLT  214
            GD    G  PGD+   I  KPHP F+R  DDL+    I L  AL GG+I +  LD + + 
Sbjct  115  GDAGENGGPPGDLYVVIRVKPHPVFRRDGDDLYCTVPISLTEALLGGTIEVPTLDGK-VK  173

Query  215  VNIVPGEVITPGMFL  229
            + I  G    PG  L
Sbjct  174  LKIPAG--TQPGTVL  186


>CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain.  The central cysteine-rich 
(CR) domain of DnaJ proteins contains four repeats 
of the motif CXXCXGXG where X is any amino acid. The isolated 
cysteine rich domain folds in zinc dependent fashion. 
Each set of two repeats binds one unit of zinc. Although this 
domain has been implicated in substrate binding, no evidence 
of specific interaction between the isolated DNAJ cysteine 
rich domain and various hydrophobic peptides has been found.
Length=65

 Score = 89.9 bits (224),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 38/67 (57%), Gaps = 3/67 (4%)

Query  63   CPGCDGRGGKEGA-VKSCTGCNGSGMKTMMRQMGPMIQRFQTVCPDCNGEGEIIREKDRC  121
            CP C+G G K G    +C  C G+G    ++Q GP   + Q+ CP C G G+II  KD C
Sbjct  1    CPTCNGSGAKPGTKPTTCPTCGGTGQVRRVQQTGPGFFQMQSTCPTCGGTGKII--KDPC  58

Query  122  KRCNGKK  128
            K+C GK 
Sbjct  59   KKCKGKG  65



Lambda      K        H        a         alpha
   0.323    0.139    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00000866

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00000867

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459822 pfam00466, Ribosomal_L10, Ribosomal protein L10            88.8    8e-23
CDD:465500 pfam17777, RL10P_insert, Insertion domain in 60S ribos...  88.0    9e-23


>CDD:459822 pfam00466, Ribosomal_L10, Ribosomal protein L10.  
Length=99

 Score = 88.8 bits (221),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 53/97 (55%), Gaps = 7/97 (7%)

Query  8    KAAYFDKLKSLLDEYKTVFIVGVDNVSSQQMHEIRLALRGQAVVL-MGKNTMVRRAIKGF  66
            K    ++LK LL EYK+V +V    ++  Q+ E+R  LR     L +GKNT++RRA++  
Sbjct  6    KEELVEELKELLKEYKSVVVVDYRGLTVAQLTELRKKLRENGAELKVGKNTLMRRALE--  63

Query  67   VADNPEYERLLPHVKGNVGFIFTNGDLKDVKTKILAN  103
                   E+L  ++KG    +FTN D   V  K+L +
Sbjct  64   ---ETGEEKLEDYLKGPTALLFTNEDPVAVA-KVLED  96


>CDD:465500 pfam17777, RL10P_insert, Insertion domain in 60S ribosomal protein 
L10P.  This domain is found in prokaryotic and archaeal 
ribosomal L10 protein.
Length=71

 Score = 88.0 bits (219),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 40/62 (65%), Gaps = 1/62 (2%)

Query  118  DVWVPAGNTGMEPGKT-SFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNML  176
            DV +PAG TG+ PG      +ALG+PTKI +G IEIT D  + + G K+ P +A LL +L
Sbjct  10   DVVLPAGPTGLAPGPIEPQLRALGIPTKIKKGKIEITKDYTVCKEGEKLTPEQANLLKLL  69

Query  177  NI  178
             I
Sbjct  70   GI  71



Lambda      K        H        a         alpha
   0.315    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00006851

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465500 pfam17777, RL10P_insert, Insertion domain in 60S ribos...  87.3    2e-23
CDD:459822 pfam00466, Ribosomal_L10, Ribosomal protein L10            87.6    2e-23


>CDD:465500 pfam17777, RL10P_insert, Insertion domain in 60S ribosomal protein 
L10P.  This domain is found in prokaryotic and archaeal 
ribosomal L10 protein.
Length=71

 Score = 87.3 bits (217),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 40/62 (65%), Gaps = 1/62 (2%)

Query  118  DVWVPAGNTGMEPGKT-SFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNML  176
            DV +PAG TG+ PG      +ALG+PTKI +G IEIT D  + + G K+ P +A LL +L
Sbjct  10   DVVLPAGPTGLAPGPIEPQLRALGIPTKIKKGKIEITKDYTVCKEGEKLTPEQANLLKLL  69

Query  177  NI  178
             I
Sbjct  70   GI  71


>CDD:459822 pfam00466, Ribosomal_L10, Ribosomal protein L10.  
Length=99

 Score = 87.6 bits (218),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 53/97 (55%), Gaps = 7/97 (7%)

Query  8    KAAYFDKLKSLLDEYKTVFIVGVDNVSSQQMHEIRLALRGQAVVL-MGKNTMVRRAIKGF  66
            K    ++LK LL EYK+V +V    ++  Q+ E+R  LR     L +GKNT++RRA++  
Sbjct  6    KEELVEELKELLKEYKSVVVVDYRGLTVAQLTELRKKLRENGAELKVGKNTLMRRALE--  63

Query  67   VADNPEYERLLPHVKGNVGFIFTNGDLKDVKTKILAN  103
                   E+L  ++KG    +FTN D   V  K+L +
Sbjct  64   ---ETGEEKLEDYLKGPTALLFTNEDPVAVA-KVLED  96



Lambda      K        H        a         alpha
   0.319    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00000869

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459822 pfam00466, Ribosomal_L10, Ribosomal protein L10            88.8    8e-23
CDD:465500 pfam17777, RL10P_insert, Insertion domain in 60S ribos...  88.0    9e-23


>CDD:459822 pfam00466, Ribosomal_L10, Ribosomal protein L10.  
Length=99

 Score = 88.8 bits (221),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 53/97 (55%), Gaps = 7/97 (7%)

Query  8    KAAYFDKLKSLLDEYKTVFIVGVDNVSSQQMHEIRLALRGQAVVL-MGKNTMVRRAIKGF  66
            K    ++LK LL EYK+V +V    ++  Q+ E+R  LR     L +GKNT++RRA++  
Sbjct  6    KEELVEELKELLKEYKSVVVVDYRGLTVAQLTELRKKLRENGAELKVGKNTLMRRALE--  63

Query  67   VADNPEYERLLPHVKGNVGFIFTNGDLKDVKTKILAN  103
                   E+L  ++KG    +FTN D   V  K+L +
Sbjct  64   ---ETGEEKLEDYLKGPTALLFTNEDPVAVA-KVLED  96


>CDD:465500 pfam17777, RL10P_insert, Insertion domain in 60S ribosomal protein 
L10P.  This domain is found in prokaryotic and archaeal 
ribosomal L10 protein.
Length=71

 Score = 88.0 bits (219),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 40/62 (65%), Gaps = 1/62 (2%)

Query  118  DVWVPAGNTGMEPGKT-SFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNML  176
            DV +PAG TG+ PG      +ALG+PTKI +G IEIT D  + + G K+ P +A LL +L
Sbjct  10   DVVLPAGPTGLAPGPIEPQLRALGIPTKIKKGKIEITKDYTVCKEGEKLTPEQANLLKLL  69

Query  177  NI  178
             I
Sbjct  70   GI  71



Lambda      K        H        a         alpha
   0.315    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00006852

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465500 pfam17777, RL10P_insert, Insertion domain in 60S ribos...  87.6    2e-23


>CDD:465500 pfam17777, RL10P_insert, Insertion domain in 60S ribosomal protein 
L10P.  This domain is found in prokaryotic and archaeal 
ribosomal L10 protein.
Length=71

 Score = 87.6 bits (218),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 40/62 (65%), Gaps = 1/62 (2%)

Query  39  DVWVPAGNTGMEPGKT-SFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNML  97
           DV +PAG TG+ PG      +ALG+PTKI +G IEIT D  + + G K+ P +A LL +L
Sbjct  10  DVVLPAGPTGLAPGPIEPQLRALGIPTKIKKGKIEITKDYTVCKEGEKLTPEQANLLKLL  69

Query  98  NI  99
            I
Sbjct  70  GI  71



Lambda      K        H        a         alpha
   0.314    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00000868

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465500 pfam17777, RL10P_insert, Insertion domain in 60S ribos...  87.6    2e-23


>CDD:465500 pfam17777, RL10P_insert, Insertion domain in 60S ribosomal protein 
L10P.  This domain is found in prokaryotic and archaeal 
ribosomal L10 protein.
Length=71

 Score = 87.6 bits (218),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 40/62 (65%), Gaps = 1/62 (2%)

Query  39  DVWVPAGNTGMEPGKT-SFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNML  97
           DV +PAG TG+ PG      +ALG+PTKI +G IEIT D  + + G K+ P +A LL +L
Sbjct  10  DVVLPAGPTGLAPGPIEPQLRALGIPTKIKKGKIEITKDYTVCKEGEKLTPEQANLLKLL  69

Query  98  NI  99
            I
Sbjct  70  GI  71



Lambda      K        H        a         alpha
   0.314    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00000870

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459822 pfam00466, Ribosomal_L10, Ribosomal protein L10            88.8    8e-23
CDD:465500 pfam17777, RL10P_insert, Insertion domain in 60S ribos...  88.0    9e-23


>CDD:459822 pfam00466, Ribosomal_L10, Ribosomal protein L10.  
Length=99

 Score = 88.8 bits (221),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 53/97 (55%), Gaps = 7/97 (7%)

Query  8    KAAYFDKLKSLLDEYKTVFIVGVDNVSSQQMHEIRLALRGQAVVL-MGKNTMVRRAIKGF  66
            K    ++LK LL EYK+V +V    ++  Q+ E+R  LR     L +GKNT++RRA++  
Sbjct  6    KEELVEELKELLKEYKSVVVVDYRGLTVAQLTELRKKLRENGAELKVGKNTLMRRALE--  63

Query  67   VADNPEYERLLPHVKGNVGFIFTNGDLKDVKTKILAN  103
                   E+L  ++KG    +FTN D   V  K+L +
Sbjct  64   ---ETGEEKLEDYLKGPTALLFTNEDPVAVA-KVLED  96


>CDD:465500 pfam17777, RL10P_insert, Insertion domain in 60S ribosomal protein 
L10P.  This domain is found in prokaryotic and archaeal 
ribosomal L10 protein.
Length=71

 Score = 88.0 bits (219),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 40/62 (65%), Gaps = 1/62 (2%)

Query  118  DVWVPAGNTGMEPGKT-SFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNML  176
            DV +PAG TG+ PG      +ALG+PTKI +G IEIT D  + + G K+ P +A LL +L
Sbjct  10   DVVLPAGPTGLAPGPIEPQLRALGIPTKIKKGKIEITKDYTVCKEGEKLTPEQANLLKLL  69

Query  177  NI  178
             I
Sbjct  70   GI  71



Lambda      K        H        a         alpha
   0.315    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00000871

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459822 pfam00466, Ribosomal_L10, Ribosomal protein L10            88.8    7e-23
CDD:465500 pfam17777, RL10P_insert, Insertion domain in 60S ribos...  88.0    8e-23


>CDD:459822 pfam00466, Ribosomal_L10, Ribosomal protein L10.  
Length=99

 Score = 88.8 bits (221),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 53/97 (55%), Gaps = 7/97 (7%)

Query  8    KAAYFDKLKSLLDEYKTVFIVGVDNVSSQQMHEIRLALRGQAVVL-MGKNTMVRRAIKGF  66
            K    ++LK LL EYK+V +V    ++  Q+ E+R  LR     L +GKNT++RRA++  
Sbjct  6    KEELVEELKELLKEYKSVVVVDYRGLTVAQLTELRKKLRENGAELKVGKNTLMRRALE--  63

Query  67   VADNPEYERLLPHVKGNVGFIFTNGDLKDVKTKILAN  103
                   E+L  ++KG    +FTN D   V  K+L +
Sbjct  64   ---ETGEEKLEDYLKGPTALLFTNEDPVAVA-KVLED  96


>CDD:465500 pfam17777, RL10P_insert, Insertion domain in 60S ribosomal protein 
L10P.  This domain is found in prokaryotic and archaeal 
ribosomal L10 protein.
Length=71

 Score = 88.0 bits (219),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 40/62 (65%), Gaps = 1/62 (2%)

Query  118  DVWVPAGNTGMEPGKT-SFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNML  176
            DV +PAG TG+ PG      +ALG+PTKI +G IEIT D  + + G K+ P +A LL +L
Sbjct  10   DVVLPAGPTGLAPGPIEPQLRALGIPTKIKKGKIEITKDYTVCKEGEKLTPEQANLLKLL  69

Query  177  NI  178
             I
Sbjct  70   GI  71



Lambda      K        H        a         alpha
   0.316    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00000872

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459822 pfam00466, Ribosomal_L10, Ribosomal protein L10            88.8    7e-23
CDD:465500 pfam17777, RL10P_insert, Insertion domain in 60S ribos...  70.3    3e-16


>CDD:459822 pfam00466, Ribosomal_L10, Ribosomal protein L10.  
Length=99

 Score = 88.8 bits (221),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 53/97 (55%), Gaps = 7/97 (7%)

Query  8    KAAYFDKLKSLLDEYKTVFIVGVDNVSSQQMHEIRLALRGQAVVL-MGKNTMVRRAIKGF  66
            K    ++LK LL EYK+V +V    ++  Q+ E+R  LR     L +GKNT++RRA++  
Sbjct  6    KEELVEELKELLKEYKSVVVVDYRGLTVAQLTELRKKLRENGAELKVGKNTLMRRALE--  63

Query  67   VADNPEYERLLPHVKGNVGFIFTNGDLKDVKTKILAN  103
                   E+L  ++KG    +FTN D   V  K+L +
Sbjct  64   ---ETGEEKLEDYLKGPTALLFTNEDPVAVA-KVLED  96


>CDD:465500 pfam17777, RL10P_insert, Insertion domain in 60S ribosomal protein 
L10P.  This domain is found in prokaryotic and archaeal 
ribosomal L10 protein.
Length=71

 Score = 70.3 bits (173),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 27/62 (44%), Positives = 35/62 (56%), Gaps = 10/62 (16%)

Query  118  DVWVPAGNTGMEPGKT-SFFQALGVPTKIARGTIEITTDLKLV---------EATLLNML  167
            DV +PAG TG+ PG      +ALG+PTKI +G IEIT D  +          +A LL +L
Sbjct  10   DVVLPAGPTGLAPGPIEPQLRALGIPTKIKKGKIEITKDYTVCKEGEKLTPEQANLLKLL  69

Query  168  NI  169
             I
Sbjct  70   GI  71



Lambda      K        H        a         alpha
   0.316    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0716    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00000873

Length=24


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.119    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 79226976


Query= TCONS_00000875

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462327 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesi...  355     3e-123
CDD:464000 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Interm...  152     5e-46 


>CDD:462327 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesicle transporter. 
 This family is conserved from plants and fungi to 
humans. Erv46 works in close conjunction with Erv41 and together 
they form a complex which cycles between the endoplasmic 
reticulum and Golgi complex. Erv46-41 interacts strongly 
with the endoplasmic reticulum glucosidase II. Mammalian glucosidase 
II comprises a catalytic alpha-subunit and a 58 kDa 
beta subunit, which is required for ER localization. All proteins 
identified biochemically as Erv41p-Erv46p interactors 
are localized to the early secretory pathway and are involved 
in protein maturation and processing in the ER and/or sorting 
into COPII vesicles for transport to the Golgi.
Length=225

 Score = 355 bits (913),  Expect = 3e-123, Method: Composition-based stats.
 Identities = 136/280 (49%), Positives = 153/280 (55%), Gaps = 55/280 (20%)

Query  143  CGGADPLPGSIKEGCCNTCDEVREAYAAKNWAFGKGTNIEQCEREGYAARIDAQRREGCR  202
            C GA+        GCCNTC++VREAY  K WAF    NIEQCEREGY  +I  Q  EGCR
Sbjct  1    CYGAEDPDK----GCCNTCEDVREAYRKKGWAFPDPENIEQCEREGYVEKIKEQLNEGCR  56

Query  203  LEGILRVNKVVGNFHIAPGRSFTSGQVHAHDLQNYLDSELPDNEKHTMTHHIHQLRFGPQ  262
            ++G L VNKV GNFHIAPGRSF  G +H HDL  YL       +K   +H IH L FGP 
Sbjct  57   IKGTLEVNKVAGNFHIAPGRSFQQGGMHVHDLSPYLK----LPDKFNFSHTIHHLSFGPD  112

Query  263  LPDEVSDRWQWTDHHHTNPLDSTSQETNDPAYNFVYFVKVVSTSYLPLGWDPLFSSAAHN  322
            +P E             NPLD T  +T+   Y F YF+KVV T Y  L            
Sbjct  113  IPGEK-----------VNPLDGTKVQTDTGNYMFQYFLKVVPTRYEFLDGKK--------  153

Query  323  AHDQTPLGSHGIAYGSGGSIETHQYSVTSHKRSLRGGDASDEGHKERLHAANGIPGVFFN  382
                               IET+QYSVTSH+R L GG           H   G+PGVFFN
Sbjct  154  -------------------IETNQYSVTSHERPLTGGRDE--------HGRGGLPGVFFN  186

Query  383  YDISPMKVINREARPKSFSGFLTGVCAIIGGTLTVAAAID  422
            YDISPMKVIN E R  SFS FLT VCAIIGG  TVA+ ID
Sbjct  187  YDISPMKVINTEQRR-SFSHFLTSVCAIIGGVFTVASLID  225


>CDD:464000 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Intermediate 
Compartment (ERGIC).  This family is the N-terminal of ERGIC 
proteins, ER-Golgi intermediate compartment clusters, otherwise 
known as Ervs, and is associated with family COPIIcoated_ERV, 
pfam07970.
Length=91

 Score = 152 bits (387),  Expect = 5e-46, Method: Composition-based stats.
 Identities = 50/91 (55%), Positives = 70/91 (77%), Gaps = 0/91 (0%)

Query  7   FTRLDAFAKTVEDARIRTTSGGIITLASLVVILYLVWGEWLDYRRVVVLPELVVDKSRGE  66
               DAF KT ED R+RT+SGGIIT+ S+++IL+L   E   Y    V PELVVDKSRGE
Sbjct  1   LKSFDAFPKTPEDYRVRTSSGGIITIISILIILFLFLSELGSYLTGTVDPELVVDKSRGE  60

Query  67  RMEIHMNITFPRLPCELLTLDVMDVSGEQQV  97
           +++I+++ITFP +PC+LL++DVMD SG++Q+
Sbjct  61  KLQINLDITFPAMPCDLLSVDVMDASGDRQL  91



Lambda      K        H        a         alpha
   0.319    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 533728992


Query= TCONS_00000874

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464000 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Interm...  144     5e-47


>CDD:464000 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Intermediate 
Compartment (ERGIC).  This family is the N-terminal of ERGIC 
proteins, ER-Golgi intermediate compartment clusters, otherwise 
known as Ervs, and is associated with family COPIIcoated_ERV, 
pfam07970.
Length=91

 Score = 144 bits (367),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 50/91 (55%), Positives = 70/91 (77%), Gaps = 0/91 (0%)

Query  7   FTRLDAFAKTVEDARIRTTSGGIITLASLVVILYLVWGEWLDYRRVVVLPELVVDKSRGE  66
               DAF KT ED R+RT+SGGIIT+ S+++IL+L   E   Y    V PELVVDKSRGE
Sbjct  1   LKSFDAFPKTPEDYRVRTSSGGIITIISILIILFLFLSELGSYLTGTVDPELVVDKSRGE  60

Query  67  RMEIHMNITFPRLPCELLTLDVMDVSGEQQV  97
           +++I+++ITFP +PC+LL++DVMD SG++Q+
Sbjct  61  KLQINLDITFPAMPCDLLSVDVMDASGDRQL  91



Lambda      K        H        a         alpha
   0.323    0.139    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00000876

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462327 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesi...  349     4e-122
CDD:464000 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Interm...  61.7    9e-13 


>CDD:462327 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesicle transporter. 
 This family is conserved from plants and fungi to 
humans. Erv46 works in close conjunction with Erv41 and together 
they form a complex which cycles between the endoplasmic 
reticulum and Golgi complex. Erv46-41 interacts strongly 
with the endoplasmic reticulum glucosidase II. Mammalian glucosidase 
II comprises a catalytic alpha-subunit and a 58 kDa 
beta subunit, which is required for ER localization. All proteins 
identified biochemically as Erv41p-Erv46p interactors 
are localized to the early secretory pathway and are involved 
in protein maturation and processing in the ER and/or sorting 
into COPII vesicles for transport to the Golgi.
Length=225

 Score = 349 bits (899),  Expect = 4e-122, Method: Composition-based stats.
 Identities = 136/280 (49%), Positives = 153/280 (55%), Gaps = 55/280 (20%)

Query  76   CGGADPLPGSIKEGCCNTCDEVREAYAAKNWAFGKGTNIEQCEREGYAARIDAQRREGCR  135
            C GA+        GCCNTC++VREAY  K WAF    NIEQCEREGY  +I  Q  EGCR
Sbjct  1    CYGAEDPDK----GCCNTCEDVREAYRKKGWAFPDPENIEQCEREGYVEKIKEQLNEGCR  56

Query  136  LEGILRVNKVVGNFHIAPGRSFTSGQVHAHDLQNYLDSELPDNEKHTMTHHIHQLRFGPQ  195
            ++G L VNKV GNFHIAPGRSF  G +H HDL  YL       +K   +H IH L FGP 
Sbjct  57   IKGTLEVNKVAGNFHIAPGRSFQQGGMHVHDLSPYLK----LPDKFNFSHTIHHLSFGPD  112

Query  196  LPDEVSDRWQWTDHHHTNPLDSTSQETNDPAYNFVYFVKVVSTSYLPLGWDPLFSSAAHN  255
            +P E             NPLD T  +T+   Y F YF+KVV T Y  L            
Sbjct  113  IPGEK-----------VNPLDGTKVQTDTGNYMFQYFLKVVPTRYEFLDGKK--------  153

Query  256  AHDQTPLGSHGIAYGSGGSIETHQYSVTSHKRSLRGGDASDEGHKERLHAANGIPGVFFN  315
                               IET+QYSVTSH+R L GG           H   G+PGVFFN
Sbjct  154  -------------------IETNQYSVTSHERPLTGGRDE--------HGRGGLPGVFFN  186

Query  316  YDISPMKVINREARPKSFSGFLTGVCAIIGGTLTVAAAID  355
            YDISPMKVIN E R  SFS FLT VCAIIGG  TVA+ ID
Sbjct  187  YDISPMKVINTEQRR-SFSHFLTSVCAIIGGVFTVASLID  225


>CDD:464000 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Intermediate 
Compartment (ERGIC).  This family is the N-terminal of ERGIC 
proteins, ER-Golgi intermediate compartment clusters, otherwise 
known as Ervs, and is associated with family COPIIcoated_ERV, 
pfam07970.
Length=91

 Score = 61.7 bits (151),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 28/30 (93%), Gaps = 0/30 (0%)

Query  1   MEIHMNITFPRLPCELLTLDVMDVSGEQQV  30
           ++I+++ITFP +PC+LL++DVMD SG++Q+
Sbjct  62  LQINLDITFPAMPCDLLSVDVMDASGDRQL  91



Lambda      K        H        a         alpha
   0.317    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00000877

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00006854

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00006855

Length=476


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00006856

Length=476


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00000878

Length=366


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00000880

Length=366


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00000881

Length=456


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00000882

Length=496


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00000883

Length=472


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00000884

Length=366


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00000885

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.138    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00000886

Length=163
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426112 pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6. Rpb6 is ...  57.1    2e-12


>CDD:426112 pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6.  Rpb6 is an essential 
subunit in the eukaryotic polymerases Pol I, II and III. 
This family also contains the bacterial equivalent to Rpb6, 
the omega subunit. Rpb6 and omega are structurally conserved 
and both function in polymerase assembly.
Length=52

 Score = 57.1 bits (139),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (2%)

Query  88   RKTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIP  140
                    +YE   +   RA Q+SM AP +     +  P+ IA++E+ + KIP
Sbjct  1    DLLKKVDNRYELVVIAAKRARQLSMGAPPIKLDSFD-KPVVIALREIAEGKIP  52



Lambda      K        H        a         alpha
   0.311    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00006858

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426112 pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6. Rpb6 is ...  56.8    2e-12


>CDD:426112 pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6.  Rpb6 is an essential 
subunit in the eukaryotic polymerases Pol I, II and III. 
This family also contains the bacterial equivalent to Rpb6, 
the omega subunit. Rpb6 and omega are structurally conserved 
and both function in polymerase assembly.
Length=52

 Score = 56.8 bits (138),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (2%)

Query  88   RKTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIP  140
                    +YE   +   RA Q+SM AP +     +  P+ IA++E+ + KIP
Sbjct  1    DLLKKVDNRYELVVIAAKRARQLSMGAPPIKLDSFD-KPVVIALREIAEGKIP  52



Lambda      K        H        a         alpha
   0.310    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00006861

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00006860

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00006859

Length=157
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426112 pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6. Rpb6 is ...  56.4    3e-12


>CDD:426112 pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6.  Rpb6 is an essential 
subunit in the eukaryotic polymerases Pol I, II and III. 
This family also contains the bacterial equivalent to Rpb6, 
the omega subunit. Rpb6 and omega are structurally conserved 
and both function in polymerase assembly.
Length=52

 Score = 56.4 bits (137),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (2%)

Query  88   RKTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIP  140
                    +YE   +   RA Q+SM AP +     +  P+ IA++E+ + KIP
Sbjct  1    DLLKKVDNRYELVVIAAKRARQLSMGAPPIKLDSFD-KPVVIALREIAEGKIP  52



Lambda      K        H        a         alpha
   0.311    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00000888

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426112 pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6. Rpb6 is ...  53.7    3e-11


>CDD:426112 pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6.  Rpb6 is an essential 
subunit in the eukaryotic polymerases Pol I, II and III. 
This family also contains the bacterial equivalent to Rpb6, 
the omega subunit. Rpb6 and omega are structurally conserved 
and both function in polymerase assembly.
Length=52

 Score = 53.7 bits (130),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (2%)

Query  88   RKTTPYMTKYERARVLGTRALQIRFNAPVLVDLEGETDPLQIAIKELNQKKIP  140
                    +YE   +   RA Q+   AP +     +  P+ IA++E+ + KIP
Sbjct  1    DLLKKVDNRYELVVIAAKRARQLSMGAPPIKLDSFD-KPVVIALREIAEGKIP  52



Lambda      K        H        a         alpha
   0.311    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00000887

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426112 pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6. Rpb6 is ...  56.8    2e-12


>CDD:426112 pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6.  Rpb6 is an essential 
subunit in the eukaryotic polymerases Pol I, II and III. 
This family also contains the bacterial equivalent to Rpb6, 
the omega subunit. Rpb6 and omega are structurally conserved 
and both function in polymerase assembly.
Length=52

 Score = 56.8 bits (138),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (2%)

Query  88   RKTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIP  140
                    +YE   +   RA Q+SM AP +     +  P+ IA++E+ + KIP
Sbjct  1    DLLKKVDNRYELVVIAAKRARQLSMGAPPIKLDSFD-KPVVIALREIAEGKIP  52



Lambda      K        H        a         alpha
   0.310    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00000892

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426112 pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6. Rpb6 is ...  56.8    2e-12


>CDD:426112 pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6.  Rpb6 is an essential 
subunit in the eukaryotic polymerases Pol I, II and III. 
This family also contains the bacterial equivalent to Rpb6, 
the omega subunit. Rpb6 and omega are structurally conserved 
and both function in polymerase assembly.
Length=52

 Score = 56.8 bits (138),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (2%)

Query  88   RKTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIP  140
                    +YE   +   RA Q+SM AP +     +  P+ IA++E+ + KIP
Sbjct  1    DLLKKVDNRYELVVIAAKRARQLSMGAPPIKLDSFD-KPVVIALREIAEGKIP  52



Lambda      K        H        a         alpha
   0.310    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00000889

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426112 pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6. Rpb6 is ...  56.8    2e-12


>CDD:426112 pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6.  Rpb6 is an essential 
subunit in the eukaryotic polymerases Pol I, II and III. 
This family also contains the bacterial equivalent to Rpb6, 
the omega subunit. Rpb6 and omega are structurally conserved 
and both function in polymerase assembly.
Length=52

 Score = 56.8 bits (138),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (2%)

Query  88   RKTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIP  140
                    +YE   +   RA Q+SM AP +     +  P+ IA++E+ + KIP
Sbjct  1    DLLKKVDNRYELVVIAAKRARQLSMGAPPIKLDSFD-KPVVIALREIAEGKIP  52



Lambda      K        H        a         alpha
   0.310    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00000890

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426112 pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6. Rpb6 is ...  56.8    2e-12


>CDD:426112 pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6.  Rpb6 is an essential 
subunit in the eukaryotic polymerases Pol I, II and III. 
This family also contains the bacterial equivalent to Rpb6, 
the omega subunit. Rpb6 and omega are structurally conserved 
and both function in polymerase assembly.
Length=52

 Score = 56.8 bits (138),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (2%)

Query  88   RKTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIP  140
                    +YE   +   RA Q+SM AP +     +  P+ IA++E+ + KIP
Sbjct  1    DLLKKVDNRYELVVIAAKRARQLSMGAPPIKLDSFD-KPVVIALREIAEGKIP  52



Lambda      K        H        a         alpha
   0.310    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00000891

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00000893

Length=708
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:375164 pfam17380, DUF5401, Family of unknown function (DUF540...  66.3    9e-12


>CDD:375164 pfam17380, DUF5401, Family of unknown function (DUF5401).  This 
is a family of unknown function found in Chromadorea.
Length=722

 Score = 66.3 bits (161),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 66/249 (27%), Positives = 125/249 (50%), Gaps = 39/249 (16%)

Query  417  EHEETLARRVLIEKKKEAATDALQRKQREEETRKRIRNQQLQEAEKQRL--LDEQ-----  469
            +H++ ++ R   EK ++   + L R+++EE+ R+  R ++L+EAEK R   +D Q     
Sbjct  279  QHQKAVSERQQQEKFEKMEQERL-RQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYA  337

Query  470  -REREKKRLRDEQERIRQQELKKQLEELKSGVKGIDISEIDLEDLDANRLRAIKLAQLEK  528
             +ER       E ERIRQ+E K++LE ++     ++IS          R+R ++  Q+E+
Sbjct  338  EQERMAMERERELERIRQEERKRELERIRQEEIAMEIS----------RMRELERLQMER  387

Query  529  EKNELNERIRT---TAKRIDHLERAFRRE------ELKHIPEDYEAQKKRDMELYEAIKA  579
            ++   NER+R     A+++  LE   +R+      E++ I  + E  ++R++   E    
Sbjct  388  QQK--NERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEE---  442

Query  580  ETLKEAEEKHKEAVALKHRLSRLVPVFSSFRKEVSEKRHEEFEK------RRKAAEREFE  633
            E  +E E    E    + ++ RL       +++  E   E+ ++      RRK  E+E E
Sbjct  443  ERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELE  502

Query  634  AKKKQRIKE  642
             +K+  I+E
Sbjct  503  ERKQAMIEE  511



Lambda      K        H        a         alpha
   0.315    0.129    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906995850


Query= TCONS_00000895

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00000894

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00000897

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            67.8    5e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 67.8 bits (166),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 126/314 (40%), Gaps = 14/314 (4%)

Query  87   IAWIGSLQSFLLMLFGVVTGPLFDAGYFRALVIFGTFVLPFGLMMASISSQYWHLILGQG  146
            I  + +L S    L   + G L D    R +++ G  +   GL++   +S  W L++   
Sbjct  34   IGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVL-R  92

Query  147  VCIGLAAGCLFVPSVAILPQYF-KQKRGLANGLAASGSSIGGVVYPIMFNKLQDQIGFAW  205
            V  GL AG LF  ++A++  +F  ++RG A GL ++G  +G  + P++   L    G+  
Sbjct  93   VLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRA  152

Query  206  ATRALGFVAFGTCCVSLSLMRMRFLPTEKRK--------LVQLSAFKDPAFVMFAVAMFL  257
            A   L  ++     V L L R        +         +V   A      +   +A+ L
Sbjct  153  AFLILAILSL-LAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLL  211

Query  258  GFLGFYNFLFYVQSYAIDTGIVDANLGFYLLSMLNAGSTVGRIFPNFVADHTGPLNMLTP  317
                F+  L Y+  Y    G+  A L   LL +      +GR+    ++D  G    L  
Sbjct  212  FGFAFFGLLTYLPLYQEVLGL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLL  270

Query  318  AVTVTAVLAFAWIGVHNVPGIIVLSVLYGLFSGGFVSLPPVVMVTLTKDI--RDLGTRLG  375
            A+ +  + A   + +      + L +   L   GF  + P +   ++      + GT  G
Sbjct  271  ALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASG  330

Query  376  MIFATTSIGLLIGT  389
            +     S+G  +G 
Sbjct  331  LYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00000896

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            67.8    5e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 67.8 bits (166),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 126/314 (40%), Gaps = 14/314 (4%)

Query  87   IAWIGSLQSFLLMLFGVVTGPLFDAGYFRALVIFGTFVLPFGLMMASISSQYWHLILGQG  146
            I  + +L S    L   + G L D    R +++ G  +   GL++   +S  W L++   
Sbjct  34   IGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVL-R  92

Query  147  VCIGLAAGCLFVPSVAILPQYF-KQKRGLANGLAASGSSIGGVVYPIMFNKLQDQIGFAW  205
            V  GL AG LF  ++A++  +F  ++RG A GL ++G  +G  + P++   L    G+  
Sbjct  93   VLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRA  152

Query  206  ATRALGFVAFGTCCVSLSLMRMRFLPTEKRK--------LVQLSAFKDPAFVMFAVAMFL  257
            A   L  ++     V L L R        +         +V   A      +   +A+ L
Sbjct  153  AFLILAILSL-LAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLL  211

Query  258  GFLGFYNFLFYVQSYAIDTGIVDANLGFYLLSMLNAGSTVGRIFPNFVADHTGPLNMLTP  317
                F+  L Y+  Y    G+  A L   LL +      +GR+    ++D  G    L  
Sbjct  212  FGFAFFGLLTYLPLYQEVLGL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLL  270

Query  318  AVTVTAVLAFAWIGVHNVPGIIVLSVLYGLFSGGFVSLPPVVMVTLTKDI--RDLGTRLG  375
            A+ +  + A   + +      + L +   L   GF  + P +   ++      + GT  G
Sbjct  271  ALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASG  330

Query  376  MIFATTSIGLLIGT  389
            +     S+G  +G 
Sbjct  331  LYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00000898

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            67.8    5e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 67.8 bits (166),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 126/314 (40%), Gaps = 14/314 (4%)

Query  87   IAWIGSLQSFLLMLFGVVTGPLFDAGYFRALVIFGTFVLPFGLMMASISSQYWHLILGQG  146
            I  + +L S    L   + G L D    R +++ G  +   GL++   +S  W L++   
Sbjct  34   IGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVL-R  92

Query  147  VCIGLAAGCLFVPSVAILPQYF-KQKRGLANGLAASGSSIGGVVYPIMFNKLQDQIGFAW  205
            V  GL AG LF  ++A++  +F  ++RG A GL ++G  +G  + P++   L    G+  
Sbjct  93   VLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRA  152

Query  206  ATRALGFVAFGTCCVSLSLMRMRFLPTEKRK--------LVQLSAFKDPAFVMFAVAMFL  257
            A   L  ++     V L L R        +         +V   A      +   +A+ L
Sbjct  153  AFLILAILSL-LAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLL  211

Query  258  GFLGFYNFLFYVQSYAIDTGIVDANLGFYLLSMLNAGSTVGRIFPNFVADHTGPLNMLTP  317
                F+  L Y+  Y    G+  A L   LL +      +GR+    ++D  G    L  
Sbjct  212  FGFAFFGLLTYLPLYQEVLGL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLL  270

Query  318  AVTVTAVLAFAWIGVHNVPGIIVLSVLYGLFSGGFVSLPPVVMVTLTKDI--RDLGTRLG  375
            A+ +  + A   + +      + L +   L   GF  + P +   ++      + GT  G
Sbjct  271  ALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASG  330

Query  376  MIFATTSIGLLIGT  389
            +     S+G  +G 
Sbjct  331  LYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00000902

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            67.8    5e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 67.8 bits (166),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 126/314 (40%), Gaps = 14/314 (4%)

Query  87   IAWIGSLQSFLLMLFGVVTGPLFDAGYFRALVIFGTFVLPFGLMMASISSQYWHLILGQG  146
            I  + +L S    L   + G L D    R +++ G  +   GL++   +S  W L++   
Sbjct  34   IGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVL-R  92

Query  147  VCIGLAAGCLFVPSVAILPQYF-KQKRGLANGLAASGSSIGGVVYPIMFNKLQDQIGFAW  205
            V  GL AG LF  ++A++  +F  ++RG A GL ++G  +G  + P++   L    G+  
Sbjct  93   VLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRA  152

Query  206  ATRALGFVAFGTCCVSLSLMRMRFLPTEKRK--------LVQLSAFKDPAFVMFAVAMFL  257
            A   L  ++     V L L R        +         +V   A      +   +A+ L
Sbjct  153  AFLILAILSL-LAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLL  211

Query  258  GFLGFYNFLFYVQSYAIDTGIVDANLGFYLLSMLNAGSTVGRIFPNFVADHTGPLNMLTP  317
                F+  L Y+  Y    G+  A L   LL +      +GR+    ++D  G    L  
Sbjct  212  FGFAFFGLLTYLPLYQEVLGL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLL  270

Query  318  AVTVTAVLAFAWIGVHNVPGIIVLSVLYGLFSGGFVSLPPVVMVTLTKDI--RDLGTRLG  375
            A+ +  + A   + +      + L +   L   GF  + P +   ++      + GT  G
Sbjct  271  ALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASG  330

Query  376  MIFATTSIGLLIGT  389
            +     S+G  +G 
Sbjct  331  LYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00000899

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            67.8    5e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 67.8 bits (166),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 126/314 (40%), Gaps = 14/314 (4%)

Query  87   IAWIGSLQSFLLMLFGVVTGPLFDAGYFRALVIFGTFVLPFGLMMASISSQYWHLILGQG  146
            I  + +L S    L   + G L D    R +++ G  +   GL++   +S  W L++   
Sbjct  34   IGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVL-R  92

Query  147  VCIGLAAGCLFVPSVAILPQYF-KQKRGLANGLAASGSSIGGVVYPIMFNKLQDQIGFAW  205
            V  GL AG LF  ++A++  +F  ++RG A GL ++G  +G  + P++   L    G+  
Sbjct  93   VLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRA  152

Query  206  ATRALGFVAFGTCCVSLSLMRMRFLPTEKRK--------LVQLSAFKDPAFVMFAVAMFL  257
            A   L  ++     V L L R        +         +V   A      +   +A+ L
Sbjct  153  AFLILAILSL-LAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLL  211

Query  258  GFLGFYNFLFYVQSYAIDTGIVDANLGFYLLSMLNAGSTVGRIFPNFVADHTGPLNMLTP  317
                F+  L Y+  Y    G+  A L   LL +      +GR+    ++D  G    L  
Sbjct  212  FGFAFFGLLTYLPLYQEVLGL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLL  270

Query  318  AVTVTAVLAFAWIGVHNVPGIIVLSVLYGLFSGGFVSLPPVVMVTLTKDI--RDLGTRLG  375
            A+ +  + A   + +      + L +   L   GF  + P +   ++      + GT  G
Sbjct  271  ALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASG  330

Query  376  MIFATTSIGLLIGT  389
            +     S+G  +G 
Sbjct  331  LYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00000900

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.145    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00000901

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.145    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00006863

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            67.8    5e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 67.8 bits (166),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 126/314 (40%), Gaps = 14/314 (4%)

Query  87   IAWIGSLQSFLLMLFGVVTGPLFDAGYFRALVIFGTFVLPFGLMMASISSQYWHLILGQG  146
            I  + +L S    L   + G L D    R +++ G  +   GL++   +S  W L++   
Sbjct  34   IGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVL-R  92

Query  147  VCIGLAAGCLFVPSVAILPQYF-KQKRGLANGLAASGSSIGGVVYPIMFNKLQDQIGFAW  205
            V  GL AG LF  ++A++  +F  ++RG A GL ++G  +G  + P++   L    G+  
Sbjct  93   VLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRA  152

Query  206  ATRALGFVAFGTCCVSLSLMRMRFLPTEKRK--------LVQLSAFKDPAFVMFAVAMFL  257
            A   L  ++     V L L R        +         +V   A      +   +A+ L
Sbjct  153  AFLILAILSL-LAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLL  211

Query  258  GFLGFYNFLFYVQSYAIDTGIVDANLGFYLLSMLNAGSTVGRIFPNFVADHTGPLNMLTP  317
                F+  L Y+  Y    G+  A L   LL +      +GR+    ++D  G    L  
Sbjct  212  FGFAFFGLLTYLPLYQEVLGL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLL  270

Query  318  AVTVTAVLAFAWIGVHNVPGIIVLSVLYGLFSGGFVSLPPVVMVTLTKDI--RDLGTRLG  375
            A+ +  + A   + +      + L +   L   GF  + P +   ++      + GT  G
Sbjct  271  ALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASG  330

Query  376  MIFATTSIGLLIGT  389
            +     S+G  +G 
Sbjct  331  LYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00006864

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            67.8    5e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 67.8 bits (166),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 126/314 (40%), Gaps = 14/314 (4%)

Query  87   IAWIGSLQSFLLMLFGVVTGPLFDAGYFRALVIFGTFVLPFGLMMASISSQYWHLILGQG  146
            I  + +L S    L   + G L D    R +++ G  +   GL++   +S  W L++   
Sbjct  34   IGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVL-R  92

Query  147  VCIGLAAGCLFVPSVAILPQYF-KQKRGLANGLAASGSSIGGVVYPIMFNKLQDQIGFAW  205
            V  GL AG LF  ++A++  +F  ++RG A GL ++G  +G  + P++   L    G+  
Sbjct  93   VLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRA  152

Query  206  ATRALGFVAFGTCCVSLSLMRMRFLPTEKRK--------LVQLSAFKDPAFVMFAVAMFL  257
            A   L  ++     V L L R        +         +V   A      +   +A+ L
Sbjct  153  AFLILAILSL-LAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLL  211

Query  258  GFLGFYNFLFYVQSYAIDTGIVDANLGFYLLSMLNAGSTVGRIFPNFVADHTGPLNMLTP  317
                F+  L Y+  Y    G+  A L   LL +      +GR+    ++D  G    L  
Sbjct  212  FGFAFFGLLTYLPLYQEVLGL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLL  270

Query  318  AVTVTAVLAFAWIGVHNVPGIIVLSVLYGLFSGGFVSLPPVVMVTLTKDI--RDLGTRLG  375
            A+ +  + A   + +      + L +   L   GF  + P +   ++      + GT  G
Sbjct  271  ALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASG  330

Query  376  MIFATTSIGLLIGT  389
            +     S+G  +G 
Sbjct  331  LYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00006865

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00000903

Length=708
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:375164 pfam17380, DUF5401, Family of unknown function (DUF540...  66.3    9e-12


>CDD:375164 pfam17380, DUF5401, Family of unknown function (DUF5401).  This 
is a family of unknown function found in Chromadorea.
Length=722

 Score = 66.3 bits (161),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 66/249 (27%), Positives = 125/249 (50%), Gaps = 39/249 (16%)

Query  417  EHEETLARRVLIEKKKEAATDALQRKQREEETRKRIRNQQLQEAEKQRL--LDEQ-----  469
            +H++ ++ R   EK ++   + L R+++EE+ R+  R ++L+EAEK R   +D Q     
Sbjct  279  QHQKAVSERQQQEKFEKMEQERL-RQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYA  337

Query  470  -REREKKRLRDEQERIRQQELKKQLEELKSGVKGIDISEIDLEDLDANRLRAIKLAQLEK  528
             +ER       E ERIRQ+E K++LE ++     ++IS          R+R ++  Q+E+
Sbjct  338  EQERMAMERERELERIRQEERKRELERIRQEEIAMEIS----------RMRELERLQMER  387

Query  529  EKNELNERIRT---TAKRIDHLERAFRRE------ELKHIPEDYEAQKKRDMELYEAIKA  579
            ++   NER+R     A+++  LE   +R+      E++ I  + E  ++R++   E    
Sbjct  388  QQK--NERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEE---  442

Query  580  ETLKEAEEKHKEAVALKHRLSRLVPVFSSFRKEVSEKRHEEFEK------RRKAAEREFE  633
            E  +E E    E    + ++ RL       +++  E   E+ ++      RRK  E+E E
Sbjct  443  ERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELE  502

Query  634  AKKKQRIKE  642
             +K+  I+E
Sbjct  503  ERKQAMIEE  511



Lambda      K        H        a         alpha
   0.315    0.129    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906995850


Query= TCONS_00000904

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00000905

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00006867

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00006868

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00006869

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00000906

Length=521
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459723 pfam00233, PDEase_I, 3'5'-cyclic nucleotide phosphodie...  126     8e-34


>CDD:459723 pfam00233, PDEase_I, 3'5'-cyclic nucleotide phosphodiesterase. 
 
Length=238

 Score = 126 bits (318),  Expect = 8e-34, Method: Composition-based stats.
 Identities = 41/134 (31%), Positives = 69/134 (51%), Gaps = 11/134 (8%)

Query  1    MGVHQKFMERLGSLQEKFYANGKSVDGWKPQDIEIYKTLVCGLLIKCADISNVARPWDIA  60
            M  H + +++    +    +          +D    + L+  +LIK ADISN  RPW+I+
Sbjct  115  MAKHFELLKKF---KSLLESKKTLDFLENEEDR---RLLLLSMLIKAADISNPTRPWEIS  168

Query  61   EKWTRILQEEFANQGEMEREVGME-TALFGGPPELGNVYKLATGQIGFMSIFALPLFEGV  119
            +KW  ++ EEF  QG++E+E+G+  + L            L   QIGF+    LPLFE +
Sbjct  169  KKWADLVAEEFFRQGDLEKELGLPVSPLMD----REKKTSLPKSQIGFIDFIVLPLFEAL  224

Query  120  SDLLPELRFTVEHI  133
            + L PEL+  ++ +
Sbjct  225  AKLFPELQPLLDQL  238



Lambda      K        H        a         alpha
   0.310    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 651048380


Query= TCONS_00006870

Length=118
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463032 pfam10262, Rdx, Rdx family. This entry is an approxima...  103     3e-31


>CDD:463032 pfam10262, Rdx, Rdx family.  This entry is an approximately 100 
residue region of selenoprotein-T, conserved from plants 
to humans. The protein binds to UDP-glucose:glycoprotein glucosyltransferase 
(UGTR), the endoplasmic reticulum (ER)-resident 
protein, which is known to be involved in the quality control 
of protein folding. Selenium (Se) plays an essential 
role in cell survival and most of the effects of Se are probably 
mediated by selenoproteins, including selenoprotein T. 
However, despite its binding to UGTR and that its mRNA is up-regulated 
in extended asphyxia, the function of the protein 
and hence of this region of it is unknown. Selenoprotein W 
contains selenium as selenocysteine in the primary protein structure 
and levels of this selenoprotein are affected by selenium.
Length=74

 Score = 103 bits (260),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 41/75 (55%), Positives = 52/75 (69%), Gaps = 8/75 (11%)

Query  38   RITIKYCTQCKWMLRAAYFAQELLSTFSTSLGEVALVPCTGGTFIVSITSLSETEVRESV  97
            R+TI+YCTQC W+LRAA+ AQELLSTF   LGEVAL+P TGG F V++           +
Sbjct  1    RVTIEYCTQCGWLLRAAWLAQELLSTFPDELGEVALIPGTGGAFEVTLDG--------EL  52

Query  98   LWDRRVDGGFPGAQE  112
            +W R+ DGGFP  +E
Sbjct  53   VWSRKEDGGFPEPKE  67



Lambda      K        H        a         alpha
   0.313    0.127    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00000907

Length=143
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460207 pfam01426, BAH, BAH domain. This domain has been calle...  62.7    4e-14


>CDD:460207 pfam01426, BAH, BAH domain.  This domain has been called BAH 
(Bromo adjacent homology) domain and has also been called ELM1 
and BAM (Bromo adjacent motif) domain. The function of this 
domain is unknown but may be involved in protein-protein 
interaction.
Length=120

 Score = 62.7 bits (153),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 18/92 (20%), Positives = 42/92 (46%), Gaps = 3/92 (3%)

Query  7    KDKPNGPIEALRVNWYYRPRDIHRIV---ADTRLVFASMHSDTCPLTSLRGKCQIKHLSE  63
             +      + +RV W+YRP +         +   +F S   D  PL+++ GKC + H S+
Sbjct  29   FEDTKNGKKMVRVQWFYRPEETVHRAGKAFNKDELFLSDEEDDVPLSAIIGKCSVLHKSD  88

Query  64   IDDFNAYRKTRDSFWYDKMFDRYIHRYYEVVP  95
            ++  + Y+      ++ ++      + ++ +P
Sbjct  89   LESLDPYKIKEPDDFFCELLYDPKTKSFKKLP  120



Lambda      K        H        a         alpha
   0.325    0.140    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00000908

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00000909

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00000910

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00006871

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00000911

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00006872

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00006873

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain. This entry...  125     7e-36


>CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain.  This entry represents 
a presumed helix-turn-helix domain found in DNA polymerase 
theta.
Length=92

 Score = 125 bits (317),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 0/91 (0%)

Query  71   GETYLICGKADIQAVCDLLEADMPAIESCLAPEKRGLKRALLEAIATGLVSGCEAIKEYV  130
            GE+ LIC + D++ V +LL A++P + SCL PEKRG+KRALLE IA GL +  E + EY+
Sbjct  1    GESILICKEKDLEKVAELLRAELPPVYSCLLPEKRGIKRALLEIIALGLATSPEDVDEYM  60

Query  131  KCTLLYRTVDKKIASSIMQSSLQELIDEGLL  161
             CTLL     +      ++SSL+EL++ GL+
Sbjct  61   SCTLLSVQQKELDVEKSIESSLEELVENGLI  91



Lambda      K        H        a         alpha
   0.321    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00006874

Length=1588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463718 pfam12816, Vps8, Golgi CORVET complex core vacuolar pr...  295     2e-92


>CDD:463718 pfam12816, Vps8, Golgi CORVET complex core vacuolar protein 8. 
 Vps8 is one of the Golgi complex components necessary for 
vacuolar sorting. Eukaryotic cells contain a highly dynamic 
endo-membrane system, in which individual organelles keep their 
identity despite continuous vesicle generation and fusion. 
Vesicles that bud from a donor membrane are targeted and 
delivered to each individual organelle, where they release 
their cargo after fusion with the acceptor membrane. Vps8 is 
the core component of the endosomal tethering complex CORVET 
(class C core vacuole/endosome tethering). Vps8 co-operates 
with Vps21-GTP to mediate endosomal clustering in a reaction 
that is dependent on Vps3. Vps8 is the only CORVET subunit 
that is enriched on late endosomes, suggesting that it is 
a marker for the maturation of late endosomes. Late endosomes 
form intralumenal vesicles, and the resulting multivesicular 
bodies fuse with the vacuole to release their cargoes.
Length=194

 Score = 295 bits (758),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 101/198 (51%), Positives = 130/198 (66%), Gaps = 14/198 (7%)

Query  717  VFLDALEPYIVDGAVRSLPPTAVKALINHFSTNHSTSRLEEIICLLDTTTMDIDQVTNLC  776
            +FL+ LEPYI+ G +RSLPP  VKAL+ H+++    SRLEE+IC LD +++DIDQV  LC
Sbjct  1    IFLETLEPYILSGRIRSLPPEVVKALVEHYASKGRLSRLEELICHLDPSSLDIDQVVKLC  60

Query  777  KHYNLYDAFIYVWNRCLGDYVGPLEELIALIPSQAESLVNGDSIDEPNLHANAAKMFPYL  836
            K + LYDA IYVWNR L DYV PL EL+ LI      L+N  S  E +   NA K+FPYL
Sbjct  61   KKHGLYDALIYVWNRALNDYVTPLVELLKLIR----PLLNEGSDLEEDDEENANKVFPYL  116

Query  837  SFVLTGRIYPTGEEMDDAEATRAKTALYDYLFSGNQSGTSQAIGR----------FPSLH  886
            S++LTGR YPTGE + + EA++AK+ +Y +LFSG         G           FP L 
Sbjct  117  SYILTGRQYPTGEGLPEDEASKAKSEIYSFLFSGTSIEWPPGSGTTDPDSDDEPSFPYLR  176

Query  887  AMLKFDASSFMSMLNEAF  904
             +LKFDA  F+S+LNEAF
Sbjct  177  LLLKFDAREFLSVLNEAF  194



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2020516418


Query= TCONS_00006877

Length=939
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain. This entry...  127     2e-35
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  82.7    9e-19
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  59.9    2e-11


>CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain.  This entry represents 
a presumed helix-turn-helix domain found in DNA polymerase 
theta.
Length=92

 Score = 127 bits (321),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 0/91 (0%)

Query  564  GETYLICGKADIQAVCDLLEADMPAIESCLAPEKRGLKRALLEAIATGLVSGCEAIKEYV  623
            GE+ LIC + D++ V +LL A++P + SCL PEKRG+KRALLE IA GL +  E + EY+
Sbjct  1    GESILICKEKDLEKVAELLRAELPPVYSCLLPEKRGIKRALLEIIALGLATSPEDVDEYM  60

Query  624  KCTLLYRTVDKKIASSIMQSSLQELIDEGLL  654
             CTLL     +      ++SSL+EL++ GL+
Sbjct  61   SCTLLSVQQKELDVEKSIESSLEELVENGLI  91


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 82.7 bits (205),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 39/196 (20%)

Query  140  YPWQASCLLARGLLEGERHLVYTAPTGGGKSLVADVLMLKRIIEH-PSRKAILVLPYVAL  198
             P QA  + A  +LEG R ++  APTG GK+L   +  L+ + +     +A+++ P   L
Sbjct  1    TPIQAEAIPA--ILEG-RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTREL  57

Query  199  VQEKLKWLRRIVENVEKNVPDDDDEAARLKPYYQRWKKLQKSIRVTGYFGGSRTAASW--  256
             ++       I E ++K            K            ++V    GG         
Sbjct  58   AEQ-------IYEELKK----------LGKGL---------GLKVASLLGGDSRKEQLEK  91

Query  257  -ADTDIAVCTIEKANSLINTAVEECSIGDLGVVVLDELHMLDDENRGYILELMVTKLLLL  315
                DI V T  +   L+        + +L ++VLDE H L D   G  LE ++     L
Sbjct  92   LKGPDILVGTPGRLLDLLQERKL---LKNLKLLVLDEAHRLLDMGFGPDLEEILR---RL  145

Query  316  QQDIQIIGMSATLSNT  331
             +  QI+ +SATL   
Sbjct  146  PKKRQILLLSATLPRN  161


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 59.9 bits (146),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 37/73 (51%), Gaps = 4/73 (5%)

Query  487  VGFHHAGMTTEERELIAQAYDQGVLKVIVATCSLAAGVNLPARRVIINGARMGRELVGPA  546
            V   H  ++ EERE I + + +G + V+VAT     G++LP   ++IN          PA
Sbjct  41   VARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGLDLPDVDLVIN---YDLPW-NPA  96

Query  547  MLRQMCGRAGRKG  559
               Q  GRAGR G
Sbjct  97   SYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1211573816


Query= TCONS_00006876

Length=939
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain. This entry...  127     2e-35
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  82.7    9e-19
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  59.9    2e-11


>CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain.  This entry represents 
a presumed helix-turn-helix domain found in DNA polymerase 
theta.
Length=92

 Score = 127 bits (321),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 0/91 (0%)

Query  564  GETYLICGKADIQAVCDLLEADMPAIESCLAPEKRGLKRALLEAIATGLVSGCEAIKEYV  623
            GE+ LIC + D++ V +LL A++P + SCL PEKRG+KRALLE IA GL +  E + EY+
Sbjct  1    GESILICKEKDLEKVAELLRAELPPVYSCLLPEKRGIKRALLEIIALGLATSPEDVDEYM  60

Query  624  KCTLLYRTVDKKIASSIMQSSLQELIDEGLL  654
             CTLL     +      ++SSL+EL++ GL+
Sbjct  61   SCTLLSVQQKELDVEKSIESSLEELVENGLI  91


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 82.7 bits (205),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 39/196 (20%)

Query  140  YPWQASCLLARGLLEGERHLVYTAPTGGGKSLVADVLMLKRIIEH-PSRKAILVLPYVAL  198
             P QA  + A  +LEG R ++  APTG GK+L   +  L+ + +     +A+++ P   L
Sbjct  1    TPIQAEAIPA--ILEG-RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTREL  57

Query  199  VQEKLKWLRRIVENVEKNVPDDDDEAARLKPYYQRWKKLQKSIRVTGYFGGSRTAASW--  256
             ++       I E ++K            K            ++V    GG         
Sbjct  58   AEQ-------IYEELKK----------LGKGL---------GLKVASLLGGDSRKEQLEK  91

Query  257  -ADTDIAVCTIEKANSLINTAVEECSIGDLGVVVLDELHMLDDENRGYILELMVTKLLLL  315
                DI V T  +   L+        + +L ++VLDE H L D   G  LE ++     L
Sbjct  92   LKGPDILVGTPGRLLDLLQERKL---LKNLKLLVLDEAHRLLDMGFGPDLEEILR---RL  145

Query  316  QQDIQIIGMSATLSNT  331
             +  QI+ +SATL   
Sbjct  146  PKKRQILLLSATLPRN  161


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 59.9 bits (146),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 37/73 (51%), Gaps = 4/73 (5%)

Query  487  VGFHHAGMTTEERELIAQAYDQGVLKVIVATCSLAAGVNLPARRVIINGARMGRELVGPA  546
            V   H  ++ EERE I + + +G + V+VAT     G++LP   ++IN          PA
Sbjct  41   VARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGLDLPDVDLVIN---YDLPW-NPA  96

Query  547  MLRQMCGRAGRKG  559
               Q  GRAGR G
Sbjct  97   SYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1211573816


Query= TCONS_00006875

Length=939
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain. This entry...  127     2e-35
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  82.7    9e-19
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  59.9    2e-11


>CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain.  This entry represents 
a presumed helix-turn-helix domain found in DNA polymerase 
theta.
Length=92

 Score = 127 bits (321),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 0/91 (0%)

Query  564  GETYLICGKADIQAVCDLLEADMPAIESCLAPEKRGLKRALLEAIATGLVSGCEAIKEYV  623
            GE+ LIC + D++ V +LL A++P + SCL PEKRG+KRALLE IA GL +  E + EY+
Sbjct  1    GESILICKEKDLEKVAELLRAELPPVYSCLLPEKRGIKRALLEIIALGLATSPEDVDEYM  60

Query  624  KCTLLYRTVDKKIASSIMQSSLQELIDEGLL  654
             CTLL     +      ++SSL+EL++ GL+
Sbjct  61   SCTLLSVQQKELDVEKSIESSLEELVENGLI  91


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 82.7 bits (205),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 39/196 (20%)

Query  140  YPWQASCLLARGLLEGERHLVYTAPTGGGKSLVADVLMLKRIIEH-PSRKAILVLPYVAL  198
             P QA  + A  +LEG R ++  APTG GK+L   +  L+ + +     +A+++ P   L
Sbjct  1    TPIQAEAIPA--ILEG-RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTREL  57

Query  199  VQEKLKWLRRIVENVEKNVPDDDDEAARLKPYYQRWKKLQKSIRVTGYFGGSRTAASW--  256
             ++       I E ++K            K            ++V    GG         
Sbjct  58   AEQ-------IYEELKK----------LGKGL---------GLKVASLLGGDSRKEQLEK  91

Query  257  -ADTDIAVCTIEKANSLINTAVEECSIGDLGVVVLDELHMLDDENRGYILELMVTKLLLL  315
                DI V T  +   L+        + +L ++VLDE H L D   G  LE ++     L
Sbjct  92   LKGPDILVGTPGRLLDLLQERKL---LKNLKLLVLDEAHRLLDMGFGPDLEEILR---RL  145

Query  316  QQDIQIIGMSATLSNT  331
             +  QI+ +SATL   
Sbjct  146  PKKRQILLLSATLPRN  161


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 59.9 bits (146),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 37/73 (51%), Gaps = 4/73 (5%)

Query  487  VGFHHAGMTTEERELIAQAYDQGVLKVIVATCSLAAGVNLPARRVIINGARMGRELVGPA  546
            V   H  ++ EERE I + + +G + V+VAT     G++LP   ++IN          PA
Sbjct  41   VARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGLDLPDVDLVIN---YDLPW-NPA  96

Query  547  MLRQMCGRAGRKG  559
               Q  GRAGR G
Sbjct  97   SYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1211573816


Query= TCONS_00006878

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00000912

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain. This entry...  125     7e-36


>CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain.  This entry represents 
a presumed helix-turn-helix domain found in DNA polymerase 
theta.
Length=92

 Score = 125 bits (317),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 0/91 (0%)

Query  71   GETYLICGKADIQAVCDLLEADMPAIESCLAPEKRGLKRALLEAIATGLVSGCEAIKEYV  130
            GE+ LIC + D++ V +LL A++P + SCL PEKRG+KRALLE IA GL +  E + EY+
Sbjct  1    GESILICKEKDLEKVAELLRAELPPVYSCLLPEKRGIKRALLEIIALGLATSPEDVDEYM  60

Query  131  KCTLLYRTVDKKIASSIMQSSLQELIDEGLL  161
             CTLL     +      ++SSL+EL++ GL+
Sbjct  61   SCTLLSVQQKELDVEKSIESSLEELVENGLI  91



Lambda      K        H        a         alpha
   0.321    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00006879

Length=940
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain. This entry...  128     2e-35
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  82.7    8e-19
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  59.9    2e-11


>CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain.  This entry represents 
a presumed helix-turn-helix domain found in DNA polymerase 
theta.
Length=92

 Score = 128 bits (323),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 0/91 (0%)

Query  564  GETYLICGKADIQAVCDLLEADMPAIESCLAPEKRGLKRALLEAIATGLVSGCEAIKEYV  623
            GE+ LIC + D++ V +LL A++P + SCL PEKRG+KRALLE IA GL +  E + EY+
Sbjct  1    GESILICKEKDLEKVAELLRAELPPVYSCLLPEKRGIKRALLEIIALGLATSPEDVDEYM  60

Query  624  KCTLLYRTVDKKIASSIMQSSLQELIDEGLL  654
             CTLL     +      ++SSL+EL++ GL+
Sbjct  61   SCTLLSVQQKELDVEKSIESSLEELVENGLI  91


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 82.7 bits (205),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 39/196 (20%)

Query  140  YPWQASCLLARGLLEGERHLVYTAPTGGGKSLVADVLMLKRIIEH-PSRKAILVLPYVAL  198
             P QA  + A  +LEG R ++  APTG GK+L   +  L+ + +     +A+++ P   L
Sbjct  1    TPIQAEAIPA--ILEG-RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTREL  57

Query  199  VQEKLKWLRRIVENVEKNVPDDDDEAARLKPYYQRWKKLQKSIRVTGYFGGSRTAASW--  256
             ++       I E ++K            K            ++V    GG         
Sbjct  58   AEQ-------IYEELKK----------LGKGL---------GLKVASLLGGDSRKEQLEK  91

Query  257  -ADTDIAVCTIEKANSLINTAVEECSIGDLGVVVLDELHMLDDENRGYILELMVTKLLLL  315
                DI V T  +   L+        + +L ++VLDE H L D   G  LE ++     L
Sbjct  92   LKGPDILVGTPGRLLDLLQERKL---LKNLKLLVLDEAHRLLDMGFGPDLEEILR---RL  145

Query  316  QQDIQIIGMSATLSNT  331
             +  QI+ +SATL   
Sbjct  146  PKKRQILLLSATLPRN  161


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 59.9 bits (146),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 37/73 (51%), Gaps = 4/73 (5%)

Query  487  VGFHHAGMTTEERELIAQAYDQGVLKVIVATCSLAAGVNLPARRVIINGARMGRELVGPA  546
            V   H  ++ EERE I + + +G + V+VAT     G++LP   ++IN          PA
Sbjct  41   VARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGLDLPDVDLVIN---YDLPW-NPA  96

Query  547  MLRQMCGRAGRKG  559
               Q  GRAGR G
Sbjct  97   SYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1194999344


Query= TCONS_00006880

Length=939
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain. This entry...  127     2e-35
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  82.7    9e-19
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  59.9    2e-11


>CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain.  This entry represents 
a presumed helix-turn-helix domain found in DNA polymerase 
theta.
Length=92

 Score = 127 bits (321),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 0/91 (0%)

Query  564  GETYLICGKADIQAVCDLLEADMPAIESCLAPEKRGLKRALLEAIATGLVSGCEAIKEYV  623
            GE+ LIC + D++ V +LL A++P + SCL PEKRG+KRALLE IA GL +  E + EY+
Sbjct  1    GESILICKEKDLEKVAELLRAELPPVYSCLLPEKRGIKRALLEIIALGLATSPEDVDEYM  60

Query  624  KCTLLYRTVDKKIASSIMQSSLQELIDEGLL  654
             CTLL     +      ++SSL+EL++ GL+
Sbjct  61   SCTLLSVQQKELDVEKSIESSLEELVENGLI  91


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 82.7 bits (205),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 39/196 (20%)

Query  140  YPWQASCLLARGLLEGERHLVYTAPTGGGKSLVADVLMLKRIIEH-PSRKAILVLPYVAL  198
             P QA  + A  +LEG R ++  APTG GK+L   +  L+ + +     +A+++ P   L
Sbjct  1    TPIQAEAIPA--ILEG-RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTREL  57

Query  199  VQEKLKWLRRIVENVEKNVPDDDDEAARLKPYYQRWKKLQKSIRVTGYFGGSRTAASW--  256
             ++       I E ++K            K            ++V    GG         
Sbjct  58   AEQ-------IYEELKK----------LGKGL---------GLKVASLLGGDSRKEQLEK  91

Query  257  -ADTDIAVCTIEKANSLINTAVEECSIGDLGVVVLDELHMLDDENRGYILELMVTKLLLL  315
                DI V T  +   L+        + +L ++VLDE H L D   G  LE ++     L
Sbjct  92   LKGPDILVGTPGRLLDLLQERKL---LKNLKLLVLDEAHRLLDMGFGPDLEEILR---RL  145

Query  316  QQDIQIIGMSATLSNT  331
             +  QI+ +SATL   
Sbjct  146  PKKRQILLLSATLPRN  161


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 59.9 bits (146),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 37/73 (51%), Gaps = 4/73 (5%)

Query  487  VGFHHAGMTTEERELIAQAYDQGVLKVIVATCSLAAGVNLPARRVIINGARMGRELVGPA  546
            V   H  ++ EERE I + + +G + V+VAT     G++LP   ++IN          PA
Sbjct  41   VARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGLDLPDVDLVIN---YDLPW-NPA  96

Query  547  MLRQMCGRAGRKG  559
               Q  GRAGR G
Sbjct  97   SYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 1211573816


Query= TCONS_00000914

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain. This entry...  125     7e-36


>CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain.  This entry represents 
a presumed helix-turn-helix domain found in DNA polymerase 
theta.
Length=92

 Score = 125 bits (317),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 0/91 (0%)

Query  71   GETYLICGKADIQAVCDLLEADMPAIESCLAPEKRGLKRALLEAIATGLVSGCEAIKEYV  130
            GE+ LIC + D++ V +LL A++P + SCL PEKRG+KRALLE IA GL +  E + EY+
Sbjct  1    GESILICKEKDLEKVAELLRAELPPVYSCLLPEKRGIKRALLEIIALGLATSPEDVDEYM  60

Query  131  KCTLLYRTVDKKIASSIMQSSLQELIDEGLL  161
             CTLL     +      ++SSL+EL++ GL+
Sbjct  61   SCTLLSVQQKELDVEKSIESSLEELVENGLI  91



Lambda      K        H        a         alpha
   0.321    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00000913

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain. This entry...  125     7e-36


>CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain.  This entry represents 
a presumed helix-turn-helix domain found in DNA polymerase 
theta.
Length=92

 Score = 125 bits (317),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 0/91 (0%)

Query  71   GETYLICGKADIQAVCDLLEADMPAIESCLAPEKRGLKRALLEAIATGLVSGCEAIKEYV  130
            GE+ LIC + D++ V +LL A++P + SCL PEKRG+KRALLE IA GL +  E + EY+
Sbjct  1    GESILICKEKDLEKVAELLRAELPPVYSCLLPEKRGIKRALLEIIALGLATSPEDVDEYM  60

Query  131  KCTLLYRTVDKKIASSIMQSSLQELIDEGLL  161
             CTLL     +      ++SSL+EL++ GL+
Sbjct  61   SCTLLSVQQKELDVEKSIESSLEELVENGLI  91



Lambda      K        H        a         alpha
   0.321    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00000915

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  83.1    3e-19


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 83.1 bits (206),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 39/196 (20%)

Query  140  YPWQASCLLARGLLEGERHLVYTAPTGGGKSLVADVLMLKRIIEH-PSRKAILVLPYVAL  198
             P QA  + A  +LEG R ++  APTG GK+L   +  L+ + +     +A+++ P   L
Sbjct  1    TPIQAEAIPA--ILEG-RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTREL  57

Query  199  VQEKLKWLRRIVENVEKNVPDDDDEAARLKPYYQRWKKLQKSIRVTGYFGGSRTAASW--  256
             ++       I E ++K            K            ++V    GG         
Sbjct  58   AEQ-------IYEELKK----------LGKGL---------GLKVASLLGGDSRKEQLEK  91

Query  257  -ADTDIAVCTIEKANSLINTAVEECSIGDLGVVVLDELHMLDDENRGYILELMVTKLLLL  315
                DI V T  +   L+        + +L ++VLDE H L D   G  LE ++     L
Sbjct  92   LKGPDILVGTPGRLLDLLQERKL---LKNLKLLVLDEAHRLLDMGFGPDLEEILR---RL  145

Query  316  QQDIQIIGMSATLSNT  331
             +  QI+ +SATL   
Sbjct  146  PKKRQILLLSATLPRN  161



Lambda      K        H        a         alpha
   0.318    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00006881

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  83.1    3e-19


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 83.1 bits (206),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 39/196 (20%)

Query  140  YPWQASCLLARGLLEGERHLVYTAPTGGGKSLVADVLMLKRIIEH-PSRKAILVLPYVAL  198
             P QA  + A  +LEG R ++  APTG GK+L   +  L+ + +     +A+++ P   L
Sbjct  1    TPIQAEAIPA--ILEG-RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTREL  57

Query  199  VQEKLKWLRRIVENVEKNVPDDDDEAARLKPYYQRWKKLQKSIRVTGYFGGSRTAASW--  256
             ++       I E ++K            K            ++V    GG         
Sbjct  58   AEQ-------IYEELKK----------LGKGL---------GLKVASLLGGDSRKEQLEK  91

Query  257  -ADTDIAVCTIEKANSLINTAVEECSIGDLGVVVLDELHMLDDENRGYILELMVTKLLLL  315
                DI V T  +   L+        + +L ++VLDE H L D   G  LE ++     L
Sbjct  92   LKGPDILVGTPGRLLDLLQERKL---LKNLKLLVLDEAHRLLDMGFGPDLEEILR---RL  145

Query  316  QQDIQIIGMSATLSNT  331
             +  QI+ +SATL   
Sbjct  146  PKKRQILLLSATLPRN  161



Lambda      K        H        a         alpha
   0.318    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00000916

Length=940
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain. This entry...  128     2e-35
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  82.7    8e-19
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  59.9    2e-11


>CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain.  This entry represents 
a presumed helix-turn-helix domain found in DNA polymerase 
theta.
Length=92

 Score = 128 bits (323),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 0/91 (0%)

Query  564  GETYLICGKADIQAVCDLLEADMPAIESCLAPEKRGLKRALLEAIATGLVSGCEAIKEYV  623
            GE+ LIC + D++ V +LL A++P + SCL PEKRG+KRALLE IA GL +  E + EY+
Sbjct  1    GESILICKEKDLEKVAELLRAELPPVYSCLLPEKRGIKRALLEIIALGLATSPEDVDEYM  60

Query  624  KCTLLYRTVDKKIASSIMQSSLQELIDEGLL  654
             CTLL     +      ++SSL+EL++ GL+
Sbjct  61   SCTLLSVQQKELDVEKSIESSLEELVENGLI  91


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 82.7 bits (205),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 39/196 (20%)

Query  140  YPWQASCLLARGLLEGERHLVYTAPTGGGKSLVADVLMLKRIIEH-PSRKAILVLPYVAL  198
             P QA  + A  +LEG R ++  APTG GK+L   +  L+ + +     +A+++ P   L
Sbjct  1    TPIQAEAIPA--ILEG-RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTREL  57

Query  199  VQEKLKWLRRIVENVEKNVPDDDDEAARLKPYYQRWKKLQKSIRVTGYFGGSRTAASW--  256
             ++       I E ++K            K            ++V    GG         
Sbjct  58   AEQ-------IYEELKK----------LGKGL---------GLKVASLLGGDSRKEQLEK  91

Query  257  -ADTDIAVCTIEKANSLINTAVEECSIGDLGVVVLDELHMLDDENRGYILELMVTKLLLL  315
                DI V T  +   L+        + +L ++VLDE H L D   G  LE ++     L
Sbjct  92   LKGPDILVGTPGRLLDLLQERKL---LKNLKLLVLDEAHRLLDMGFGPDLEEILR---RL  145

Query  316  QQDIQIIGMSATLSNT  331
             +  QI+ +SATL   
Sbjct  146  PKKRQILLLSATLPRN  161


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 59.9 bits (146),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 37/73 (51%), Gaps = 4/73 (5%)

Query  487  VGFHHAGMTTEERELIAQAYDQGVLKVIVATCSLAAGVNLPARRVIINGARMGRELVGPA  546
            V   H  ++ EERE I + + +G + V+VAT     G++LP   ++IN          PA
Sbjct  41   VARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGLDLPDVDLVIN---YDLPW-NPA  96

Query  547  MLRQMCGRAGRKG  559
               Q  GRAGR G
Sbjct  97   SYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1194999344


Query= TCONS_00000917

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain. This entry...  126     3e-36


>CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain.  This entry represents 
a presumed helix-turn-helix domain found in DNA polymerase 
theta.
Length=92

 Score = 126 bits (320),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 0/91 (0%)

Query  71   GETYLICGKADIQAVCDLLEADMPAIESCLAPEKRGLKRALLEAIATGLVSGCEAIKEYV  130
            GE+ LIC + D++ V +LL A++P + SCL PEKRG+KRALLE IA GL +  E + EY+
Sbjct  1    GESILICKEKDLEKVAELLRAELPPVYSCLLPEKRGIKRALLEIIALGLATSPEDVDEYM  60

Query  131  KCTLLYRTVDKKIASSIMQSSLQELIDEGLL  161
             CTLL     +      ++SSL+EL++ GL+
Sbjct  61   SCTLLSVQQKELDVEKSIESSLEELVENGLI  91



Lambda      K        H        a         alpha
   0.321    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00006882

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  83.1    3e-19


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 83.1 bits (206),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 39/196 (20%)

Query  140  YPWQASCLLARGLLEGERHLVYTAPTGGGKSLVADVLMLKRIIEH-PSRKAILVLPYVAL  198
             P QA  + A  +LEG R ++  APTG GK+L   +  L+ + +     +A+++ P   L
Sbjct  1    TPIQAEAIPA--ILEG-RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTREL  57

Query  199  VQEKLKWLRRIVENVEKNVPDDDDEAARLKPYYQRWKKLQKSIRVTGYFGGSRTAASW--  256
             ++       I E ++K            K            ++V    GG         
Sbjct  58   AEQ-------IYEELKK----------LGKGL---------GLKVASLLGGDSRKEQLEK  91

Query  257  -ADTDIAVCTIEKANSLINTAVEECSIGDLGVVVLDELHMLDDENRGYILELMVTKLLLL  315
                DI V T  +   L+        + +L ++VLDE H L D   G  LE ++     L
Sbjct  92   LKGPDILVGTPGRLLDLLQERKL---LKNLKLLVLDEAHRLLDMGFGPDLEEILR---RL  145

Query  316  QQDIQIIGMSATLSNT  331
             +  QI+ +SATL   
Sbjct  146  PKKRQILLLSATLPRN  161



Lambda      K        H        a         alpha
   0.318    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00000918

Length=939
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain. This entry...  127     2e-35
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  82.7    9e-19
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  59.9    2e-11


>CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain.  This entry represents 
a presumed helix-turn-helix domain found in DNA polymerase 
theta.
Length=92

 Score = 127 bits (321),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 0/91 (0%)

Query  564  GETYLICGKADIQAVCDLLEADMPAIESCLAPEKRGLKRALLEAIATGLVSGCEAIKEYV  623
            GE+ LIC + D++ V +LL A++P + SCL PEKRG+KRALLE IA GL +  E + EY+
Sbjct  1    GESILICKEKDLEKVAELLRAELPPVYSCLLPEKRGIKRALLEIIALGLATSPEDVDEYM  60

Query  624  KCTLLYRTVDKKIASSIMQSSLQELIDEGLL  654
             CTLL     +      ++SSL+EL++ GL+
Sbjct  61   SCTLLSVQQKELDVEKSIESSLEELVENGLI  91


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 82.7 bits (205),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 39/196 (20%)

Query  140  YPWQASCLLARGLLEGERHLVYTAPTGGGKSLVADVLMLKRIIEH-PSRKAILVLPYVAL  198
             P QA  + A  +LEG R ++  APTG GK+L   +  L+ + +     +A+++ P   L
Sbjct  1    TPIQAEAIPA--ILEG-RDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTREL  57

Query  199  VQEKLKWLRRIVENVEKNVPDDDDEAARLKPYYQRWKKLQKSIRVTGYFGGSRTAASW--  256
             ++       I E ++K            K            ++V    GG         
Sbjct  58   AEQ-------IYEELKK----------LGKGL---------GLKVASLLGGDSRKEQLEK  91

Query  257  -ADTDIAVCTIEKANSLINTAVEECSIGDLGVVVLDELHMLDDENRGYILELMVTKLLLL  315
                DI V T  +   L+        + +L ++VLDE H L D   G  LE ++     L
Sbjct  92   LKGPDILVGTPGRLLDLLQERKL---LKNLKLLVLDEAHRLLDMGFGPDLEEILR---RL  145

Query  316  QQDIQIIGMSATLSNT  331
             +  QI+ +SATL   
Sbjct  146  PKKRQILLLSATLPRN  161


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 59.9 bits (146),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 37/73 (51%), Gaps = 4/73 (5%)

Query  487  VGFHHAGMTTEERELIAQAYDQGVLKVIVATCSLAAGVNLPARRVIINGARMGRELVGPA  546
            V   H  ++ EERE I + + +G + V+VAT     G++LP   ++IN          PA
Sbjct  41   VARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGLDLPDVDLVIN---YDLPW-NPA  96

Query  547  MLRQMCGRAGRKG  559
               Q  GRAGR G
Sbjct  97   SYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1211573816


Query= TCONS_00000920

Length=686
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain. This entry...  125     9e-35
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  59.1    2e-11


>CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain.  This entry represents 
a presumed helix-turn-helix domain found in DNA polymerase 
theta.
Length=92

 Score = 125 bits (316),  Expect = 9e-35, Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 0/91 (0%)

Query  311  GETYLICGKADIQAVCDLLEADMPAIESCLAPEKRGLKRALLEAIATGLVSGCEAIKEYV  370
            GE+ LIC + D++ V +LL A++P + SCL PEKRG+KRALLE IA GL +  E + EY+
Sbjct  1    GESILICKEKDLEKVAELLRAELPPVYSCLLPEKRGIKRALLEIIALGLATSPEDVDEYM  60

Query  371  KCTLLYRTVDKKIASSIMQSSLQELIDEGLL  401
             CTLL     +      ++SSL+EL++ GL+
Sbjct  61   SCTLLSVQQKELDVEKSIESSLEELVENGLI  91


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 59.1 bits (144),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 37/73 (51%), Gaps = 4/73 (5%)

Query  234  VGFHHAGMTTEERELIAQAYDQGVLKVIVATCSLAAGVNLPARRVIINGARMGRELVGPA  293
            V   H  ++ EERE I + + +G + V+VAT     G++LP   ++IN          PA
Sbjct  41   VARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGLDLPDVDLVIN---YDLPW-NPA  96

Query  294  MLRQMCGRAGRKG  306
               Q  GRAGR G
Sbjct  97   SYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.321    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 874550470


Query= TCONS_00006883

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain. This entry...  125     7e-36


>CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain.  This entry represents 
a presumed helix-turn-helix domain found in DNA polymerase 
theta.
Length=92

 Score = 125 bits (317),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 0/91 (0%)

Query  71   GETYLICGKADIQAVCDLLEADMPAIESCLAPEKRGLKRALLEAIATGLVSGCEAIKEYV  130
            GE+ LIC + D++ V +LL A++P + SCL PEKRG+KRALLE IA GL +  E + EY+
Sbjct  1    GESILICKEKDLEKVAELLRAELPPVYSCLLPEKRGIKRALLEIIALGLATSPEDVDEYM  60

Query  131  KCTLLYRTVDKKIASSIMQSSLQELIDEGLL  161
             CTLL     +      ++SSL+EL++ GL+
Sbjct  61   SCTLLSVQQKELDVEKSIESSLEELVENGLI  91



Lambda      K        H        a         alpha
   0.321    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00006884

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain. This entry...  125     3e-35
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  59.5    2e-11


>CDD:466619 pfam20470, HTH_61, Helix-turn-helix domain.  This entry represents 
a presumed helix-turn-helix domain found in DNA polymerase 
theta.
Length=92

 Score = 125 bits (317),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 0/91 (0%)

Query  184  GETYLICGKADIQAVCDLLEADMPAIESCLAPEKRGLKRALLEAIATGLVSGCEAIKEYV  243
            GE+ LIC + D++ V +LL A++P + SCL PEKRG+KRALLE IA GL +  E + EY+
Sbjct  1    GESILICKEKDLEKVAELLRAELPPVYSCLLPEKRGIKRALLEIIALGLATSPEDVDEYM  60

Query  244  KCTLLYRTVDKKIASSIMQSSLQELIDEGLL  274
             CTLL     +      ++SSL+EL++ GL+
Sbjct  61   SCTLLSVQQKELDVEKSIESSLEELVENGLI  91


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 59.5 bits (145),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 37/73 (51%), Gaps = 4/73 (5%)

Query  107  VGFHHAGMTTEERELIAQAYDQGVLKVIVATCSLAAGVNLPARRVIINGARMGRELVGPA  166
            V   H  ++ EERE I + + +G + V+VAT     G++LP   ++IN          PA
Sbjct  41   VARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGLDLPDVDLVIN---YDLPW-NPA  96

Query  167  MLRQMCGRAGRKG  179
               Q  GRAGR G
Sbjct  97   SYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.321    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 697897876


Query= TCONS_00000922

Length=1588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463718 pfam12816, Vps8, Golgi CORVET complex core vacuolar pr...  295     2e-92


>CDD:463718 pfam12816, Vps8, Golgi CORVET complex core vacuolar protein 8. 
 Vps8 is one of the Golgi complex components necessary for 
vacuolar sorting. Eukaryotic cells contain a highly dynamic 
endo-membrane system, in which individual organelles keep their 
identity despite continuous vesicle generation and fusion. 
Vesicles that bud from a donor membrane are targeted and 
delivered to each individual organelle, where they release 
their cargo after fusion with the acceptor membrane. Vps8 is 
the core component of the endosomal tethering complex CORVET 
(class C core vacuole/endosome tethering). Vps8 co-operates 
with Vps21-GTP to mediate endosomal clustering in a reaction 
that is dependent on Vps3. Vps8 is the only CORVET subunit 
that is enriched on late endosomes, suggesting that it is 
a marker for the maturation of late endosomes. Late endosomes 
form intralumenal vesicles, and the resulting multivesicular 
bodies fuse with the vacuole to release their cargoes.
Length=194

 Score = 295 bits (758),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 101/198 (51%), Positives = 130/198 (66%), Gaps = 14/198 (7%)

Query  717  VFLDALEPYIVDGAVRSLPPTAVKALINHFSTNHSTSRLEEIICLLDTTTMDIDQVTNLC  776
            +FL+ LEPYI+ G +RSLPP  VKAL+ H+++    SRLEE+IC LD +++DIDQV  LC
Sbjct  1    IFLETLEPYILSGRIRSLPPEVVKALVEHYASKGRLSRLEELICHLDPSSLDIDQVVKLC  60

Query  777  KHYNLYDAFIYVWNRCLGDYVGPLEELIALIPSQAESLVNGDSIDEPNLHANAAKMFPYL  836
            K + LYDA IYVWNR L DYV PL EL+ LI      L+N  S  E +   NA K+FPYL
Sbjct  61   KKHGLYDALIYVWNRALNDYVTPLVELLKLIR----PLLNEGSDLEEDDEENANKVFPYL  116

Query  837  SFVLTGRIYPTGEEMDDAEATRAKTALYDYLFSGNQSGTSQAIGR----------FPSLH  886
            S++LTGR YPTGE + + EA++AK+ +Y +LFSG         G           FP L 
Sbjct  117  SYILTGRQYPTGEGLPEDEASKAKSEIYSFLFSGTSIEWPPGSGTTDPDSDDEPSFPYLR  176

Query  887  AMLKFDASSFMSMLNEAF  904
             +LKFDA  F+S+LNEAF
Sbjct  177  LLLKFDAREFLSVLNEAF  194



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2020516418


Query= TCONS_00006885

Length=1252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463718 pfam12816, Vps8, Golgi CORVET complex core vacuolar pr...  292     4e-92


>CDD:463718 pfam12816, Vps8, Golgi CORVET complex core vacuolar protein 8. 
 Vps8 is one of the Golgi complex components necessary for 
vacuolar sorting. Eukaryotic cells contain a highly dynamic 
endo-membrane system, in which individual organelles keep their 
identity despite continuous vesicle generation and fusion. 
Vesicles that bud from a donor membrane are targeted and 
delivered to each individual organelle, where they release 
their cargo after fusion with the acceptor membrane. Vps8 is 
the core component of the endosomal tethering complex CORVET 
(class C core vacuole/endosome tethering). Vps8 co-operates 
with Vps21-GTP to mediate endosomal clustering in a reaction 
that is dependent on Vps3. Vps8 is the only CORVET subunit 
that is enriched on late endosomes, suggesting that it is 
a marker for the maturation of late endosomes. Late endosomes 
form intralumenal vesicles, and the resulting multivesicular 
bodies fuse with the vacuole to release their cargoes.
Length=194

 Score = 292 bits (750),  Expect = 4e-92, Method: Composition-based stats.
 Identities = 101/198 (51%), Positives = 130/198 (66%), Gaps = 14/198 (7%)

Query  381  VFLDALEPYIVDGAVRSLPPTAVKALINHFSTNHSTSRLEEIICLLDTTTMDIDQVTNLC  440
            +FL+ LEPYI+ G +RSLPP  VKAL+ H+++    SRLEE+IC LD +++DIDQV  LC
Sbjct  1    IFLETLEPYILSGRIRSLPPEVVKALVEHYASKGRLSRLEELICHLDPSSLDIDQVVKLC  60

Query  441  KHYNLYDAFIYVWNRCLGDYVGPLEELIALIPSQAESLVNGDSIDEPNLHANAAKMFPYL  500
            K + LYDA IYVWNR L DYV PL EL+ LI      L+N  S  E +   NA K+FPYL
Sbjct  61   KKHGLYDALIYVWNRALNDYVTPLVELLKLIR----PLLNEGSDLEEDDEENANKVFPYL  116

Query  501  SFVLTGRIYPTGEEMDDAEATRAKTALYDYLFSGNQSGTSQAIGR----------FPSLH  550
            S++LTGR YPTGE + + EA++AK+ +Y +LFSG         G           FP L 
Sbjct  117  SYILTGRQYPTGEGLPEDEASKAKSEIYSFLFSGTSIEWPPGSGTTDPDSDDEPSFPYLR  176

Query  551  AMLKFDASSFMSMLNEAF  568
             +LKFDA  F+S+LNEAF
Sbjct  177  LLLKFDAREFLSVLNEAF  194



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1588596400


Query= TCONS_00006886

Length=1588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463718 pfam12816, Vps8, Golgi CORVET complex core vacuolar pr...  295     2e-92


>CDD:463718 pfam12816, Vps8, Golgi CORVET complex core vacuolar protein 8. 
 Vps8 is one of the Golgi complex components necessary for 
vacuolar sorting. Eukaryotic cells contain a highly dynamic 
endo-membrane system, in which individual organelles keep their 
identity despite continuous vesicle generation and fusion. 
Vesicles that bud from a donor membrane are targeted and 
delivered to each individual organelle, where they release 
their cargo after fusion with the acceptor membrane. Vps8 is 
the core component of the endosomal tethering complex CORVET 
(class C core vacuole/endosome tethering). Vps8 co-operates 
with Vps21-GTP to mediate endosomal clustering in a reaction 
that is dependent on Vps3. Vps8 is the only CORVET subunit 
that is enriched on late endosomes, suggesting that it is 
a marker for the maturation of late endosomes. Late endosomes 
form intralumenal vesicles, and the resulting multivesicular 
bodies fuse with the vacuole to release their cargoes.
Length=194

 Score = 295 bits (758),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 101/198 (51%), Positives = 130/198 (66%), Gaps = 14/198 (7%)

Query  717  VFLDALEPYIVDGAVRSLPPTAVKALINHFSTNHSTSRLEEIICLLDTTTMDIDQVTNLC  776
            +FL+ LEPYI+ G +RSLPP  VKAL+ H+++    SRLEE+IC LD +++DIDQV  LC
Sbjct  1    IFLETLEPYILSGRIRSLPPEVVKALVEHYASKGRLSRLEELICHLDPSSLDIDQVVKLC  60

Query  777  KHYNLYDAFIYVWNRCLGDYVGPLEELIALIPSQAESLVNGDSIDEPNLHANAAKMFPYL  836
            K + LYDA IYVWNR L DYV PL EL+ LI      L+N  S  E +   NA K+FPYL
Sbjct  61   KKHGLYDALIYVWNRALNDYVTPLVELLKLIR----PLLNEGSDLEEDDEENANKVFPYL  116

Query  837  SFVLTGRIYPTGEEMDDAEATRAKTALYDYLFSGNQSGTSQAIGR----------FPSLH  886
            S++LTGR YPTGE + + EA++AK+ +Y +LFSG         G           FP L 
Sbjct  117  SYILTGRQYPTGEGLPEDEASKAKSEIYSFLFSGTSIEWPPGSGTTDPDSDDEPSFPYLR  176

Query  887  AMLKFDASSFMSMLNEAF  904
             +LKFDA  F+S+LNEAF
Sbjct  177  LLLKFDAREFLSVLNEAF  194



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 2020516418


Query= TCONS_00000923

Length=113
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        78.1    6e-21


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 78.1 bits (193),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query  17   SFLASFLLGWTVTTGAGIASYPLDTIRRRMMMTSGEAVKYKSS-LDAARQIIAKEGVKSL  75
            SFLAS L G      A   +YPLD ++ R+ +  G         LD  ++I  +EG++ L
Sbjct  4    SFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGL  63

Query  76   FKGAGANILRGVAGAGV-LSIYDQVQLILFGKK  107
            +KG   N+LR    A +    Y+ ++ +L  K 
Sbjct  64   YKGLLPNLLRVAPAAAIYFGTYETLKRLLLKKL  96



Lambda      K        H        a         alpha
   0.320    0.137    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00006887

Length=381


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00006888

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00000925

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00000926

Length=286


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00000933

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.122    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00000935

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402102 pfam10330, Stb3, Putative Sin3 binding protein. This i...  150     6e-46


>CDD:402102 pfam10330, Stb3, Putative Sin3 binding protein.  This is a family 
of the conserved N-terminal end of a group of proteins 
conserved in fungi. It is likely to be a Sin3 binding protein. 
Sin3p does not bind DNA directly even though the yeast SIN3 
gene functions as a transcriptional repressor. Sin3p is part 
of a large multiprotein complex. Stb3 appears to bind directly 
to ribosomal RNA Processing Elements (RRPE) although 
there are no obvious domains which would accord with this, implying 
that Stb3 may be a novel RNA-binding protein.
Length=79

 Score = 150 bits (381),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 54/88 (61%), Positives = 65/88 (74%), Gaps = 10/88 (11%)

Query  107  ITPSMLARYHLPEIMLNQGPLAIRHVMAYLTTSVPGFSRIPPAKARRLVVAALEGRGSEG  166
            ITP+MLA+     I+L+ GPLAIRH+  YLTTSVPGFS + P+K RRL+VAALEG   +G
Sbjct  1    ITPAMLAK-----ILLSHGPLAIRHITGYLTTSVPGFSDLSPSKQRRLIVAALEGGDQDG  55

Query  167  GGLSSDVIFEKVGWGRWVARRRGEPPRN  194
                 DV+FEKVGWGRW ARR G+P R 
Sbjct  56   -----DVVFEKVGWGRWDARRVGQPERF  78



Lambda      K        H        a         alpha
   0.312    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00000934

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402102 pfam10330, Stb3, Putative Sin3 binding protein. This i...  150     6e-46


>CDD:402102 pfam10330, Stb3, Putative Sin3 binding protein.  This is a family 
of the conserved N-terminal end of a group of proteins 
conserved in fungi. It is likely to be a Sin3 binding protein. 
Sin3p does not bind DNA directly even though the yeast SIN3 
gene functions as a transcriptional repressor. Sin3p is part 
of a large multiprotein complex. Stb3 appears to bind directly 
to ribosomal RNA Processing Elements (RRPE) although 
there are no obvious domains which would accord with this, implying 
that Stb3 may be a novel RNA-binding protein.
Length=79

 Score = 150 bits (381),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 54/88 (61%), Positives = 65/88 (74%), Gaps = 10/88 (11%)

Query  107  ITPSMLARYHLPEIMLNQGPLAIRHVMAYLTTSVPGFSRIPPAKARRLVVAALEGRGSEG  166
            ITP+MLA+     I+L+ GPLAIRH+  YLTTSVPGFS + P+K RRL+VAALEG   +G
Sbjct  1    ITPAMLAK-----ILLSHGPLAIRHITGYLTTSVPGFSDLSPSKQRRLIVAALEGGDQDG  55

Query  167  GGLSSDVIFEKVGWGRWVARRRGEPPRN  194
                 DV+FEKVGWGRW ARR G+P R 
Sbjct  56   -----DVVFEKVGWGRWDARRVGQPERF  78



Lambda      K        H        a         alpha
   0.312    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00000938

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402102 pfam10330, Stb3, Putative Sin3 binding protein. This i...  150     6e-46


>CDD:402102 pfam10330, Stb3, Putative Sin3 binding protein.  This is a family 
of the conserved N-terminal end of a group of proteins 
conserved in fungi. It is likely to be a Sin3 binding protein. 
Sin3p does not bind DNA directly even though the yeast SIN3 
gene functions as a transcriptional repressor. Sin3p is part 
of a large multiprotein complex. Stb3 appears to bind directly 
to ribosomal RNA Processing Elements (RRPE) although 
there are no obvious domains which would accord with this, implying 
that Stb3 may be a novel RNA-binding protein.
Length=79

 Score = 150 bits (381),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 54/88 (61%), Positives = 65/88 (74%), Gaps = 10/88 (11%)

Query  107  ITPSMLARYHLPEIMLNQGPLAIRHVMAYLTTSVPGFSRIPPAKARRLVVAALEGRGSEG  166
            ITP+MLA+     I+L+ GPLAIRH+  YLTTSVPGFS + P+K RRL+VAALEG   +G
Sbjct  1    ITPAMLAK-----ILLSHGPLAIRHITGYLTTSVPGFSDLSPSKQRRLIVAALEGGDQDG  55

Query  167  GGLSSDVIFEKVGWGRWVARRRGEPPRN  194
                 DV+FEKVGWGRW ARR G+P R 
Sbjct  56   -----DVVFEKVGWGRWDARRVGQPERF  78



Lambda      K        H        a         alpha
   0.312    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00000937

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402102 pfam10330, Stb3, Putative Sin3 binding protein. This i...  150     6e-46


>CDD:402102 pfam10330, Stb3, Putative Sin3 binding protein.  This is a family 
of the conserved N-terminal end of a group of proteins 
conserved in fungi. It is likely to be a Sin3 binding protein. 
Sin3p does not bind DNA directly even though the yeast SIN3 
gene functions as a transcriptional repressor. Sin3p is part 
of a large multiprotein complex. Stb3 appears to bind directly 
to ribosomal RNA Processing Elements (RRPE) although 
there are no obvious domains which would accord with this, implying 
that Stb3 may be a novel RNA-binding protein.
Length=79

 Score = 150 bits (381),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 54/88 (61%), Positives = 65/88 (74%), Gaps = 10/88 (11%)

Query  107  ITPSMLARYHLPEIMLNQGPLAIRHVMAYLTTSVPGFSRIPPAKARRLVVAALEGRGSEG  166
            ITP+MLA+     I+L+ GPLAIRH+  YLTTSVPGFS + P+K RRL+VAALEG   +G
Sbjct  1    ITPAMLAK-----ILLSHGPLAIRHITGYLTTSVPGFSDLSPSKQRRLIVAALEGGDQDG  55

Query  167  GGLSSDVIFEKVGWGRWVARRRGEPPRN  194
                 DV+FEKVGWGRW ARR G+P R 
Sbjct  56   -----DVVFEKVGWGRWDARRVGQPERF  78



Lambda      K        H        a         alpha
   0.312    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00000936

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402102 pfam10330, Stb3, Putative Sin3 binding protein. This i...  150     6e-46


>CDD:402102 pfam10330, Stb3, Putative Sin3 binding protein.  This is a family 
of the conserved N-terminal end of a group of proteins 
conserved in fungi. It is likely to be a Sin3 binding protein. 
Sin3p does not bind DNA directly even though the yeast SIN3 
gene functions as a transcriptional repressor. Sin3p is part 
of a large multiprotein complex. Stb3 appears to bind directly 
to ribosomal RNA Processing Elements (RRPE) although 
there are no obvious domains which would accord with this, implying 
that Stb3 may be a novel RNA-binding protein.
Length=79

 Score = 150 bits (381),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 54/88 (61%), Positives = 65/88 (74%), Gaps = 10/88 (11%)

Query  107  ITPSMLARYHLPEIMLNQGPLAIRHVMAYLTTSVPGFSRIPPAKARRLVVAALEGRGSEG  166
            ITP+MLA+     I+L+ GPLAIRH+  YLTTSVPGFS + P+K RRL+VAALEG   +G
Sbjct  1    ITPAMLAK-----ILLSHGPLAIRHITGYLTTSVPGFSDLSPSKQRRLIVAALEGGDQDG  55

Query  167  GGLSSDVIFEKVGWGRWVARRRGEPPRN  194
                 DV+FEKVGWGRW ARR G+P R 
Sbjct  56   -----DVVFEKVGWGRWDARRVGQPERF  78



Lambda      K        H        a         alpha
   0.312    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00000939

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402102 pfam10330, Stb3, Putative Sin3 binding protein. This i...  150     6e-46


>CDD:402102 pfam10330, Stb3, Putative Sin3 binding protein.  This is a family 
of the conserved N-terminal end of a group of proteins 
conserved in fungi. It is likely to be a Sin3 binding protein. 
Sin3p does not bind DNA directly even though the yeast SIN3 
gene functions as a transcriptional repressor. Sin3p is part 
of a large multiprotein complex. Stb3 appears to bind directly 
to ribosomal RNA Processing Elements (RRPE) although 
there are no obvious domains which would accord with this, implying 
that Stb3 may be a novel RNA-binding protein.
Length=79

 Score = 150 bits (381),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 54/88 (61%), Positives = 65/88 (74%), Gaps = 10/88 (11%)

Query  107  ITPSMLARYHLPEIMLNQGPLAIRHVMAYLTTSVPGFSRIPPAKARRLVVAALEGRGSEG  166
            ITP+MLA+     I+L+ GPLAIRH+  YLTTSVPGFS + P+K RRL+VAALEG   +G
Sbjct  1    ITPAMLAK-----ILLSHGPLAIRHITGYLTTSVPGFSDLSPSKQRRLIVAALEGGDQDG  55

Query  167  GGLSSDVIFEKVGWGRWVARRRGEPPRN  194
                 DV+FEKVGWGRW ARR G+P R 
Sbjct  56   -----DVVFEKVGWGRWDARRVGQPERF  78



Lambda      K        H        a         alpha
   0.312    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00000940

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402102 pfam10330, Stb3, Putative Sin3 binding protein. This i...  150     6e-46


>CDD:402102 pfam10330, Stb3, Putative Sin3 binding protein.  This is a family 
of the conserved N-terminal end of a group of proteins 
conserved in fungi. It is likely to be a Sin3 binding protein. 
Sin3p does not bind DNA directly even though the yeast SIN3 
gene functions as a transcriptional repressor. Sin3p is part 
of a large multiprotein complex. Stb3 appears to bind directly 
to ribosomal RNA Processing Elements (RRPE) although 
there are no obvious domains which would accord with this, implying 
that Stb3 may be a novel RNA-binding protein.
Length=79

 Score = 150 bits (381),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 54/88 (61%), Positives = 65/88 (74%), Gaps = 10/88 (11%)

Query  107  ITPSMLARYHLPEIMLNQGPLAIRHVMAYLTTSVPGFSRIPPAKARRLVVAALEGRGSEG  166
            ITP+MLA+     I+L+ GPLAIRH+  YLTTSVPGFS + P+K RRL+VAALEG   +G
Sbjct  1    ITPAMLAK-----ILLSHGPLAIRHITGYLTTSVPGFSDLSPSKQRRLIVAALEGGDQDG  55

Query  167  GGLSSDVIFEKVGWGRWVARRRGEPPRN  194
                 DV+FEKVGWGRW ARR G+P R 
Sbjct  56   -----DVVFEKVGWGRWDARRVGQPERF  78



Lambda      K        H        a         alpha
   0.312    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00000927

Length=1066
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463966 pfam13718, GNAT_acetyltr_2, GNAT acetyltransferase 2. ...  444     4e-150
CDD:463969 pfam13725, tRNA_bind_2, Possible tRNA binding domain. ...  401     1e-133
CDD:462441 pfam08351, DUF1726, Domain of unknown function (DUF172...  221     4e-67 
CDD:461555 pfam05127, Helicase_RecD, Helicase. This domain contai...  218     3e-66 


>CDD:463966 pfam13718, GNAT_acetyltr_2, GNAT acetyltransferase 2.  This domain 
has N-acetyltransferase activity. It has a GCN5-related 
N-acetyltransferase (GNAT) fold.
Length=227

 Score = 444 bits (1144),  Expect = 4e-150, Method: Composition-based stats.
 Identities = 164/230 (71%), Positives = 188/230 (82%), Gaps = 3/230 (1%)

Query  540  QMMALYVASHYKNTPNDLQLMSDAPAHQLFVLVPPIDEEATKLPEPLCVIQVALEGRISR  599
            ++MALYVASHYKN+PNDLQL+SDAPAH LFVL+ P+DE    LP+ LCV+QVALEGRISR
Sbjct  1    RLMALYVASHYKNSPNDLQLLSDAPAHHLFVLLGPVDESGNALPDILCVVQVALEGRISR  60

Query  600  QSVLNSLSRGQRAGGDLIPWLVSQQYQDEDFASLSGARIVRIATNPEYMNMGYGSRALEL  659
            +SV NSLSRG+RA GDLIPW VSQQ+QDEDFASLSGARIVRIAT+PEY  MGYGSRALEL
Sbjct  61   ESVKNSLSRGKRASGDLIPWTVSQQFQDEDFASLSGARIVRIATHPEYQGMGYGSRALEL  120

Query  660  LIDFYEGKFTDLSEKIPDVQEEMVRVTDEELANSSLLDDNIHVRDIRSMPPLFGKLSERR  719
            LI +YEGK TDLSE     +EE  R+ DEE   S++      +R  + +PPL  KLSER 
Sbjct  121  LIQYYEGKITDLSEAEELEEEEADRIEDEE---SAVSLLEEKIRPRKELPPLLLKLSERP  177

Query  720  PDALDYVGVSYGLTPPLHKFWKRASFVPVYLRQTPNELTGEHSCVMLRTL  769
            P+ LDY+GVS+GLTP L KFWKRA FVPVYLRQTPNELTGEHSC+MLR L
Sbjct  178  PERLDYLGVSFGLTPDLLKFWKRAGFVPVYLRQTPNELTGEHSCIMLRPL  227


>CDD:463969 pfam13725, tRNA_bind_2, Possible tRNA binding domain.  This domain, 
found at the C-terminus of tRNA(Met) cytidine acetyltransferase, 
may be involved in tRNA-binding.
Length=231

 Score = 401 bits (1033),  Expect = 1e-133, Method: Composition-based stats.
 Identities = 146/236 (62%), Positives = 181/236 (77%), Gaps = 5/236 (2%)

Query  778   WLGEFARDFHKRFIALLSYQFREFPSVLSLSICESATAGAKLDTSYTPSLLTKSDLDAAF  837
             WLG FA+DF +RF++LLSYQFR+FPSVL+LSI ESA AGAKLD S  P  LTK++LDA  
Sbjct  1     WLGAFAKDFRRRFLSLLSYQFRKFPSVLALSILESANAGAKLDPSTEPKPLTKAELDALL  60

Query  838   SPFDLKRLDSYANNLLDYHVILDMVPTIAEYYFSGRLSGKVNLSGVQQSILLAIGLQRKN  897
             SPFDLKRL+SYANN+LDYHVILD++PT+A  YF+GRL   V LSGVQ +ILLAIGLQRK+
Sbjct  61    SPFDLKRLESYANNMLDYHVILDLLPTLARLYFTGRLPSDVKLSGVQSAILLAIGLQRKD  120

Query  898   LDDIEKELNLPSSQLLAMFLKIVRKMSTYFRGLVEGAVAETLPAEKVPIAQSSADAHDEV  957
             +DD+EKELNLPS+QLLA+F KI+RK+S YFR + E A+  TLP  K       +   DEV
Sbjct  121   IDDLEKELNLPSNQLLALFNKIMRKISKYFRSIQEKAIEATLPKLK-----DISAHDDEV  175

Query  958   VDERFKPLDTGLEDELREGGQQVDEELREKQRALIDSLPLDKYEIDNGSAAWEEAE  1013
              DE  +PL+  L++EL E  ++V+E+L+EKQR LIDSL LDKY I      WE+A 
Sbjct  176   KDEDLEPLEQSLDEELEEAAKEVEEKLKEKQRELIDSLDLDKYAIKGDEEDWEKAL  231


>CDD:462441 pfam08351, DUF1726, Domain of unknown function (DUF1726).  This 
domain of unknown function is often found at the N-terminus 
of proteins containing pfam05127. Its fold resembles that 
of pfam05127, but it does not appear to bind ATP.
Length=178

 Score = 221 bits (564),  Expect = 4e-67, Method: Composition-based stats.
 Identities = 75/199 (38%), Positives = 106/199 (53%), Gaps = 25/199 (13%)

Query  8    SRIPALIRNNVQEKKRSFFVVVGDR----AKDVIVNLHYIMSSVDVKQNKSVLWAYKKDL  63
             R+  L+ + V+   R   V+VGD      K+ + N H I+S +      SVL+ Y  + 
Sbjct  1    DRLRKLLEDAVKANHRRLVVIVGDDPELHVKEQVPNYHRILSRLS-SSKPSVLYCYHPEF  59

Query  64   LGFTSHRKKREAKIKKEIKRGIREPNQEDPFELFITLNQIRYVYYKETEKILGNTYGMCI  123
                   KKR+ + KK +KRG  +              +I Y+ YKE+EK+LG TY M +
Sbjct  60   FD----AKKRKKEFKKLVKRGELDI-------------EIEYIDYKESEKVLGQTYDMLV  102

Query  124  LQDFEAITPNLLARTIETVEGGGIVLLLLKGMKSLKQLYTLSMDIHSRYRTEAHDDVVAR  183
            L  FE +TPN L R +ETV GGG+++LLL  + S KQLYT+    H    T  ++DV  R
Sbjct  103  LDLFEDLTPNDLGRLVETVRGGGLIILLLPPLDSWKQLYTI---FHKSLVTPPYEDVKGR  159

Query  184  FNERFILSLGSCDSCLVVD  202
            FN RFI SL   +  L+VD
Sbjct  160  FNRRFIRSLLEHEGILIVD  178


>CDD:461555 pfam05127, Helicase_RecD, Helicase.  This domain contains a P-loop 
(Walker A) motif, suggesting that it has ATPase activity, 
and a Walker B motif. In tRNA(Met) cytidine acetyltransferase 
(TmcA) it may function as an RNA helicase motor (driven 
by ATP hydrolysis) which delivers the wobble base to the active 
centre of the GCN5-related N-acetyltransferase (GNAT) 
domain. It is found in the bacterial exodeoxyribonuclease V 
alpha chain (RecD), which has 5'-3' helicase activity. It is 
structurally similar to the motor domain 1A in other SF1 helicases.
Length=171

 Score = 218 bits (557),  Expect = 3e-66, Method: Composition-based stats.
 Identities = 101/220 (46%), Positives = 128/220 (58%), Gaps = 51/220 (23%)

Query  281  TLTAARGRGKSAALGVAIAAAVAHGYSNIFITSPSPENLKTLFEFIFKGFDALGYLDHVD  340
             +TA RGRGKSAALG+A AA +A GYS I +T+PSP N++TLFEF  KG DALG      
Sbjct  1    VITADRGRGKSAALGLAAAALIAQGYSRIIVTAPSPANVQTLFEFAIKGLDALGLT----  56

Query  341  YTILQSTNPDFNKAIVRVNIHRQHRQTIQYIQPQDAHVL-GQAELLVIDEAAAIPLPLVR  399
                    P F   I+R N      Q I++I P +   L GQA+LLV+DEAAAIPLPL++
Sbjct  57   --------PKFRDGIIRGN-----GQRIRFIAPDELLKLPGQADLLVVDEAAAIPLPLLK  103

Query  400  KLM-GPYLVFMASTINGYEGTGRSLSLKLIQQLREQSRGGLKANGQDDTDIADRATGKAA  458
            +L+ G   V  A+T++GYEGTGR  SLK + QL++Q  G                     
Sbjct  104  QLLRGFPRVVFATTVHGYEGTGRGFSLKFLAQLKKQLPG---------------------  142

Query  459  KSAEKNLGGRSLREITLSEPIRYAPGDSVEKWLNKVLCLD  498
                       LRE+ L+EPIRYA GD +EKWLN +L LD
Sbjct  143  -----------LRELELTEPIRYAEGDPLEKWLNDLLLLD  171



Lambda      K        H        a         alpha
   0.317    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1373399720


Query= TCONS_00006890

Length=1005
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463966 pfam13718, GNAT_acetyltr_2, GNAT acetyltransferase 2. ...  442     5e-150
CDD:463969 pfam13725, tRNA_bind_2, Possible tRNA binding domain. ...  379     7e-126
CDD:462441 pfam08351, DUF1726, Domain of unknown function (DUF172...  220     5e-67 
CDD:461555 pfam05127, Helicase_RecD, Helicase. This domain contai...  217     4e-66 


>CDD:463966 pfam13718, GNAT_acetyltr_2, GNAT acetyltransferase 2.  This domain 
has N-acetyltransferase activity. It has a GCN5-related 
N-acetyltransferase (GNAT) fold.
Length=227

 Score = 442 bits (1139),  Expect = 5e-150, Method: Composition-based stats.
 Identities = 164/230 (71%), Positives = 188/230 (82%), Gaps = 3/230 (1%)

Query  540  QMMALYVASHYKNTPNDLQLMSDAPAHQLFVLVPPIDEEATKLPEPLCVIQVALEGRISR  599
            ++MALYVASHYKN+PNDLQL+SDAPAH LFVL+ P+DE    LP+ LCV+QVALEGRISR
Sbjct  1    RLMALYVASHYKNSPNDLQLLSDAPAHHLFVLLGPVDESGNALPDILCVVQVALEGRISR  60

Query  600  QSVLNSLSRGQRAGGDLIPWLVSQQYQDEDFASLSGARIVRIATNPEYMNMGYGSRALEL  659
            +SV NSLSRG+RA GDLIPW VSQQ+QDEDFASLSGARIVRIAT+PEY  MGYGSRALEL
Sbjct  61   ESVKNSLSRGKRASGDLIPWTVSQQFQDEDFASLSGARIVRIATHPEYQGMGYGSRALEL  120

Query  660  LIDFYEGKFTDLSEKIPDVQEEMVRVTDEELANSSLLDDNIHVRDIRSMPPLFGKLSERR  719
            LI +YEGK TDLSE     +EE  R+ DEE   S++      +R  + +PPL  KLSER 
Sbjct  121  LIQYYEGKITDLSEAEELEEEEADRIEDEE---SAVSLLEEKIRPRKELPPLLLKLSERP  177

Query  720  PDALDYVGVSYGLTPPLHKFWKRASFVPVYLRQTPNELTGEHSCVMLRTL  769
            P+ LDY+GVS+GLTP L KFWKRA FVPVYLRQTPNELTGEHSC+MLR L
Sbjct  178  PERLDYLGVSFGLTPDLLKFWKRAGFVPVYLRQTPNELTGEHSCIMLRPL  227


>CDD:463969 pfam13725, tRNA_bind_2, Possible tRNA binding domain.  This domain, 
found at the C-terminus of tRNA(Met) cytidine acetyltransferase, 
may be involved in tRNA-binding.
Length=231

 Score = 379 bits (977),  Expect = 7e-126, Method: Composition-based stats.
 Identities = 141/228 (62%), Positives = 176/228 (77%), Gaps = 5/228 (2%)

Query  778   WLGEFARDFHKRFIALLSYQFREFPSVLSLSICESATAGAKLDTSYTPSLLTKSDLDAAF  837
             WLG FA+DF +RF++LLSYQFR+FPSVL+LSI ESA AGAKLD S  P  LTK++LDA  
Sbjct  1     WLGAFAKDFRRRFLSLLSYQFRKFPSVLALSILESANAGAKLDPSTEPKPLTKAELDALL  60

Query  838   SPFDLKRLDSYANNLLDYHVILDMVPTIAEYYFSGRLSGKVNLSGVQQSILLAIGLQRKN  897
             SPFDLKRL+SYANN+LDYHVILD++PT+A  YF+GRL   V LSGVQ +ILLAIGLQRK+
Sbjct  61    SPFDLKRLESYANNMLDYHVILDLLPTLARLYFTGRLPSDVKLSGVQSAILLAIGLQRKD  120

Query  898   LDDIEKELNLPSSQLLAMFLKIVRKMSTYFRGLVEGAVAETLPAEKVPIAQSSADAHDEV  957
             +DD+EKELNLPS+QLLA+F KI+RK+S YFR + E A+  TLP  K       +   DEV
Sbjct  121   IDDLEKELNLPSNQLLALFNKIMRKISKYFRSIQEKAIEATLPKLK-----DISAHDDEV  175

Query  958   VDERFKPLDTGLEDELREGGQQVDEELREKQRALIDSLPLDNLQIRDR  1005
              DE  +PL+  L++EL E  ++V+E+L+EKQR LIDSL LD   I+  
Sbjct  176   KDEDLEPLEQSLDEELEEAAKEVEEKLKEKQRELIDSLDLDKYAIKGD  223


>CDD:462441 pfam08351, DUF1726, Domain of unknown function (DUF1726).  This 
domain of unknown function is often found at the N-terminus 
of proteins containing pfam05127. Its fold resembles that 
of pfam05127, but it does not appear to bind ATP.
Length=178

 Score = 220 bits (563),  Expect = 5e-67, Method: Composition-based stats.
 Identities = 75/199 (38%), Positives = 106/199 (53%), Gaps = 25/199 (13%)

Query  8    SRIPALIRNNVQEKKRSFFVVVGDR----AKDVIVNLHYIMSSVDVKQNKSVLWAYKKDL  63
             R+  L+ + V+   R   V+VGD      K+ + N H I+S +      SVL+ Y  + 
Sbjct  1    DRLRKLLEDAVKANHRRLVVIVGDDPELHVKEQVPNYHRILSRLS-SSKPSVLYCYHPEF  59

Query  64   LGFTSHRKKREAKIKKEIKRGIREPNQEDPFELFITLNQIRYVYYKETEKILGNTYGMCI  123
                   KKR+ + KK +KRG  +              +I Y+ YKE+EK+LG TY M +
Sbjct  60   FD----AKKRKKEFKKLVKRGELDI-------------EIEYIDYKESEKVLGQTYDMLV  102

Query  124  LQDFEAITPNLLARTIETVEGGGIVLLLLKGMKSLKQLYTLSMDIHSRYRTEAHDDVVAR  183
            L  FE +TPN L R +ETV GGG+++LLL  + S KQLYT+    H    T  ++DV  R
Sbjct  103  LDLFEDLTPNDLGRLVETVRGGGLIILLLPPLDSWKQLYTI---FHKSLVTPPYEDVKGR  159

Query  184  FNERFILSLGSCDSCLVVD  202
            FN RFI SL   +  L+VD
Sbjct  160  FNRRFIRSLLEHEGILIVD  178


>CDD:461555 pfam05127, Helicase_RecD, Helicase.  This domain contains a P-loop 
(Walker A) motif, suggesting that it has ATPase activity, 
and a Walker B motif. In tRNA(Met) cytidine acetyltransferase 
(TmcA) it may function as an RNA helicase motor (driven 
by ATP hydrolysis) which delivers the wobble base to the active 
centre of the GCN5-related N-acetyltransferase (GNAT) 
domain. It is found in the bacterial exodeoxyribonuclease V 
alpha chain (RecD), which has 5'-3' helicase activity. It is 
structurally similar to the motor domain 1A in other SF1 helicases.
Length=171

 Score = 217 bits (556),  Expect = 4e-66, Method: Composition-based stats.
 Identities = 101/220 (46%), Positives = 128/220 (58%), Gaps = 51/220 (23%)

Query  281  TLTAARGRGKSAALGVAIAAAVAHGYSNIFITSPSPENLKTLFEFIFKGFDALGYLDHVD  340
             +TA RGRGKSAALG+A AA +A GYS I +T+PSP N++TLFEF  KG DALG      
Sbjct  1    VITADRGRGKSAALGLAAAALIAQGYSRIIVTAPSPANVQTLFEFAIKGLDALGLT----  56

Query  341  YTILQSTNPDFNKAIVRVNIHRQHRQTIQYIQPQDAHVL-GQAELLVIDEAAAIPLPLVR  399
                    P F   I+R N      Q I++I P +   L GQA+LLV+DEAAAIPLPL++
Sbjct  57   --------PKFRDGIIRGN-----GQRIRFIAPDELLKLPGQADLLVVDEAAAIPLPLLK  103

Query  400  KLM-GPYLVFMASTINGYEGTGRSLSLKLIQQLREQSRGGLKANGQDDTDIADRATGKAA  458
            +L+ G   V  A+T++GYEGTGR  SLK + QL++Q  G                     
Sbjct  104  QLLRGFPRVVFATTVHGYEGTGRGFSLKFLAQLKKQLPG---------------------  142

Query  459  KSAEKNLGGRSLREITLSEPIRYAPGDSVEKWLNKVLCLD  498
                       LRE+ L+EPIRYA GD +EKWLN +L LD
Sbjct  143  -----------LRELELTEPIRYAEGDPLEKWLNDLLLLD  171



Lambda      K        H        a         alpha
   0.318    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1287031284


Query= TCONS_00000928

Length=999
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463966 pfam13718, GNAT_acetyltr_2, GNAT acetyltransferase 2. ...  442     4e-150
CDD:463969 pfam13725, tRNA_bind_2, Possible tRNA binding domain. ...  379     7e-126
CDD:462441 pfam08351, DUF1726, Domain of unknown function (DUF172...  221     3e-67 
CDD:461555 pfam05127, Helicase_RecD, Helicase. This domain contai...  217     3e-66 


>CDD:463966 pfam13718, GNAT_acetyltr_2, GNAT acetyltransferase 2.  This domain 
has N-acetyltransferase activity. It has a GCN5-related 
N-acetyltransferase (GNAT) fold.
Length=227

 Score = 442 bits (1140),  Expect = 4e-150, Method: Composition-based stats.
 Identities = 164/230 (71%), Positives = 188/230 (82%), Gaps = 3/230 (1%)

Query  540  QMMALYVASHYKNTPNDLQLMSDAPAHQLFVLVPPIDEEATKLPEPLCVIQVALEGRISR  599
            ++MALYVASHYKN+PNDLQL+SDAPAH LFVL+ P+DE    LP+ LCV+QVALEGRISR
Sbjct  1    RLMALYVASHYKNSPNDLQLLSDAPAHHLFVLLGPVDESGNALPDILCVVQVALEGRISR  60

Query  600  QSVLNSLSRGQRAGGDLIPWLVSQQYQDEDFASLSGARIVRIATNPEYMNMGYGSRALEL  659
            +SV NSLSRG+RA GDLIPW VSQQ+QDEDFASLSGARIVRIAT+PEY  MGYGSRALEL
Sbjct  61   ESVKNSLSRGKRASGDLIPWTVSQQFQDEDFASLSGARIVRIATHPEYQGMGYGSRALEL  120

Query  660  LIDFYEGKFTDLSEKIPDVQEEMVRVTDEELANSSLLDDNIHVRDIRSMPPLFGKLSERR  719
            LI +YEGK TDLSE     +EE  R+ DEE   S++      +R  + +PPL  KLSER 
Sbjct  121  LIQYYEGKITDLSEAEELEEEEADRIEDEE---SAVSLLEEKIRPRKELPPLLLKLSERP  177

Query  720  PDALDYVGVSYGLTPPLHKFWKRASFVPVYLRQTPNELTGEHSCVMLRTL  769
            P+ LDY+GVS+GLTP L KFWKRA FVPVYLRQTPNELTGEHSC+MLR L
Sbjct  178  PERLDYLGVSFGLTPDLLKFWKRAGFVPVYLRQTPNELTGEHSCIMLRPL  227


>CDD:463969 pfam13725, tRNA_bind_2, Possible tRNA binding domain.  This domain, 
found at the C-terminus of tRNA(Met) cytidine acetyltransferase, 
may be involved in tRNA-binding.
Length=231

 Score = 379 bits (976),  Expect = 7e-126, Method: Composition-based stats.
 Identities = 141/222 (64%), Positives = 175/222 (79%), Gaps = 5/222 (2%)

Query  778  WLGEFARDFHKRFIALLSYQFREFPSVLSLSICESATAGAKLDTSYTPSLLTKSDLDAAF  837
            WLG FA+DF +RF++LLSYQFR+FPSVL+LSI ESA AGAKLD S  P  LTK++LDA  
Sbjct  1    WLGAFAKDFRRRFLSLLSYQFRKFPSVLALSILESANAGAKLDPSTEPKPLTKAELDALL  60

Query  838  SPFDLKRLDSYANNLLDYHVILDMVPTIAEYYFSGRLSGKVNLSGVQQSILLAIGLQRKN  897
            SPFDLKRL+SYANN+LDYHVILD++PT+A  YF+GRL   V LSGVQ +ILLAIGLQRK+
Sbjct  61   SPFDLKRLESYANNMLDYHVILDLLPTLARLYFTGRLPSDVKLSGVQSAILLAIGLQRKD  120

Query  898  LDDIEKELNLPSSQLLAMFLKIVRKMSTYFRGLVEGAVAETLPAEKVPIAQSSADAHDEV  957
            +DD+EKELNLPS+QLLA+F KI+RK+S YFR + E A+  TLP  K       +   DEV
Sbjct  121  IDDLEKELNLPSNQLLALFNKIMRKISKYFRSIQEKAIEATLPKLK-----DISAHDDEV  175

Query  958  VDERFKPLDTGLEDELREGGQQVDEELREKQRALIDSLPLDK  999
             DE  +PL+  L++EL E  ++V+E+L+EKQR LIDSL LDK
Sbjct  176  KDEDLEPLEQSLDEELEEAAKEVEEKLKEKQRELIDSLDLDK  217


>CDD:462441 pfam08351, DUF1726, Domain of unknown function (DUF1726).  This 
domain of unknown function is often found at the N-terminus 
of proteins containing pfam05127. Its fold resembles that 
of pfam05127, but it does not appear to bind ATP.
Length=178

 Score = 221 bits (564),  Expect = 3e-67, Method: Composition-based stats.
 Identities = 75/199 (38%), Positives = 106/199 (53%), Gaps = 25/199 (13%)

Query  8    SRIPALIRNNVQEKKRSFFVVVGDR----AKDVIVNLHYIMSSVDVKQNKSVLWAYKKDL  63
             R+  L+ + V+   R   V+VGD      K+ + N H I+S +      SVL+ Y  + 
Sbjct  1    DRLRKLLEDAVKANHRRLVVIVGDDPELHVKEQVPNYHRILSRLS-SSKPSVLYCYHPEF  59

Query  64   LGFTSHRKKREAKIKKEIKRGIREPNQEDPFELFITLNQIRYVYYKETEKILGNTYGMCI  123
                   KKR+ + KK +KRG  +              +I Y+ YKE+EK+LG TY M +
Sbjct  60   FD----AKKRKKEFKKLVKRGELDI-------------EIEYIDYKESEKVLGQTYDMLV  102

Query  124  LQDFEAITPNLLARTIETVEGGGIVLLLLKGMKSLKQLYTLSMDIHSRYRTEAHDDVVAR  183
            L  FE +TPN L R +ETV GGG+++LLL  + S KQLYT+    H    T  ++DV  R
Sbjct  103  LDLFEDLTPNDLGRLVETVRGGGLIILLLPPLDSWKQLYTI---FHKSLVTPPYEDVKGR  159

Query  184  FNERFILSLGSCDSCLVVD  202
            FN RFI SL   +  L+VD
Sbjct  160  FNRRFIRSLLEHEGILIVD  178


>CDD:461555 pfam05127, Helicase_RecD, Helicase.  This domain contains a P-loop 
(Walker A) motif, suggesting that it has ATPase activity, 
and a Walker B motif. In tRNA(Met) cytidine acetyltransferase 
(TmcA) it may function as an RNA helicase motor (driven 
by ATP hydrolysis) which delivers the wobble base to the active 
centre of the GCN5-related N-acetyltransferase (GNAT) 
domain. It is found in the bacterial exodeoxyribonuclease V 
alpha chain (RecD), which has 5'-3' helicase activity. It is 
structurally similar to the motor domain 1A in other SF1 helicases.
Length=171

 Score = 217 bits (556),  Expect = 3e-66, Method: Composition-based stats.
 Identities = 101/220 (46%), Positives = 128/220 (58%), Gaps = 51/220 (23%)

Query  281  TLTAARGRGKSAALGVAIAAAVAHGYSNIFITSPSPENLKTLFEFIFKGFDALGYLDHVD  340
             +TA RGRGKSAALG+A AA +A GYS I +T+PSP N++TLFEF  KG DALG      
Sbjct  1    VITADRGRGKSAALGLAAAALIAQGYSRIIVTAPSPANVQTLFEFAIKGLDALGLT----  56

Query  341  YTILQSTNPDFNKAIVRVNIHRQHRQTIQYIQPQDAHVL-GQAELLVIDEAAAIPLPLVR  399
                    P F   I+R N      Q I++I P +   L GQA+LLV+DEAAAIPLPL++
Sbjct  57   --------PKFRDGIIRGN-----GQRIRFIAPDELLKLPGQADLLVVDEAAAIPLPLLK  103

Query  400  KLM-GPYLVFMASTINGYEGTGRSLSLKLIQQLREQSRGGLKANGQDDTDIADRATGKAA  458
            +L+ G   V  A+T++GYEGTGR  SLK + QL++Q  G                     
Sbjct  104  QLLRGFPRVVFATTVHGYEGTGRGFSLKFLAQLKKQLPG---------------------  142

Query  459  KSAEKNLGGRSLREITLSEPIRYAPGDSVEKWLNKVLCLD  498
                       LRE+ L+EPIRYA GD +EKWLN +L LD
Sbjct  143  -----------LRELELTEPIRYAEGDPLEKWLNDLLLLD  171



Lambda      K        H        a         alpha
   0.318    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1278536028


Query= TCONS_00000929

Length=1066
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463966 pfam13718, GNAT_acetyltr_2, GNAT acetyltransferase 2. ...  444     4e-150
CDD:463969 pfam13725, tRNA_bind_2, Possible tRNA binding domain. ...  401     1e-133
CDD:462441 pfam08351, DUF1726, Domain of unknown function (DUF172...  221     4e-67 
CDD:461555 pfam05127, Helicase_RecD, Helicase. This domain contai...  218     3e-66 


>CDD:463966 pfam13718, GNAT_acetyltr_2, GNAT acetyltransferase 2.  This domain 
has N-acetyltransferase activity. It has a GCN5-related 
N-acetyltransferase (GNAT) fold.
Length=227

 Score = 444 bits (1144),  Expect = 4e-150, Method: Composition-based stats.
 Identities = 164/230 (71%), Positives = 188/230 (82%), Gaps = 3/230 (1%)

Query  540  QMMALYVASHYKNTPNDLQLMSDAPAHQLFVLVPPIDEEATKLPEPLCVIQVALEGRISR  599
            ++MALYVASHYKN+PNDLQL+SDAPAH LFVL+ P+DE    LP+ LCV+QVALEGRISR
Sbjct  1    RLMALYVASHYKNSPNDLQLLSDAPAHHLFVLLGPVDESGNALPDILCVVQVALEGRISR  60

Query  600  QSVLNSLSRGQRAGGDLIPWLVSQQYQDEDFASLSGARIVRIATNPEYMNMGYGSRALEL  659
            +SV NSLSRG+RA GDLIPW VSQQ+QDEDFASLSGARIVRIAT+PEY  MGYGSRALEL
Sbjct  61   ESVKNSLSRGKRASGDLIPWTVSQQFQDEDFASLSGARIVRIATHPEYQGMGYGSRALEL  120

Query  660  LIDFYEGKFTDLSEKIPDVQEEMVRVTDEELANSSLLDDNIHVRDIRSMPPLFGKLSERR  719
            LI +YEGK TDLSE     +EE  R+ DEE   S++      +R  + +PPL  KLSER 
Sbjct  121  LIQYYEGKITDLSEAEELEEEEADRIEDEE---SAVSLLEEKIRPRKELPPLLLKLSERP  177

Query  720  PDALDYVGVSYGLTPPLHKFWKRASFVPVYLRQTPNELTGEHSCVMLRTL  769
            P+ LDY+GVS+GLTP L KFWKRA FVPVYLRQTPNELTGEHSC+MLR L
Sbjct  178  PERLDYLGVSFGLTPDLLKFWKRAGFVPVYLRQTPNELTGEHSCIMLRPL  227


>CDD:463969 pfam13725, tRNA_bind_2, Possible tRNA binding domain.  This domain, 
found at the C-terminus of tRNA(Met) cytidine acetyltransferase, 
may be involved in tRNA-binding.
Length=231

 Score = 401 bits (1033),  Expect = 1e-133, Method: Composition-based stats.
 Identities = 146/236 (62%), Positives = 181/236 (77%), Gaps = 5/236 (2%)

Query  778   WLGEFARDFHKRFIALLSYQFREFPSVLSLSICESATAGAKLDTSYTPSLLTKSDLDAAF  837
             WLG FA+DF +RF++LLSYQFR+FPSVL+LSI ESA AGAKLD S  P  LTK++LDA  
Sbjct  1     WLGAFAKDFRRRFLSLLSYQFRKFPSVLALSILESANAGAKLDPSTEPKPLTKAELDALL  60

Query  838   SPFDLKRLDSYANNLLDYHVILDMVPTIAEYYFSGRLSGKVNLSGVQQSILLAIGLQRKN  897
             SPFDLKRL+SYANN+LDYHVILD++PT+A  YF+GRL   V LSGVQ +ILLAIGLQRK+
Sbjct  61    SPFDLKRLESYANNMLDYHVILDLLPTLARLYFTGRLPSDVKLSGVQSAILLAIGLQRKD  120

Query  898   LDDIEKELNLPSSQLLAMFLKIVRKMSTYFRGLVEGAVAETLPAEKVPIAQSSADAHDEV  957
             +DD+EKELNLPS+QLLA+F KI+RK+S YFR + E A+  TLP  K       +   DEV
Sbjct  121   IDDLEKELNLPSNQLLALFNKIMRKISKYFRSIQEKAIEATLPKLK-----DISAHDDEV  175

Query  958   VDERFKPLDTGLEDELREGGQQVDEELREKQRALIDSLPLDKYEIDNGSAAWEEAE  1013
              DE  +PL+  L++EL E  ++V+E+L+EKQR LIDSL LDKY I      WE+A 
Sbjct  176   KDEDLEPLEQSLDEELEEAAKEVEEKLKEKQRELIDSLDLDKYAIKGDEEDWEKAL  231


>CDD:462441 pfam08351, DUF1726, Domain of unknown function (DUF1726).  This 
domain of unknown function is often found at the N-terminus 
of proteins containing pfam05127. Its fold resembles that 
of pfam05127, but it does not appear to bind ATP.
Length=178

 Score = 221 bits (564),  Expect = 4e-67, Method: Composition-based stats.
 Identities = 75/199 (38%), Positives = 106/199 (53%), Gaps = 25/199 (13%)

Query  8    SRIPALIRNNVQEKKRSFFVVVGDR----AKDVIVNLHYIMSSVDVKQNKSVLWAYKKDL  63
             R+  L+ + V+   R   V+VGD      K+ + N H I+S +      SVL+ Y  + 
Sbjct  1    DRLRKLLEDAVKANHRRLVVIVGDDPELHVKEQVPNYHRILSRLS-SSKPSVLYCYHPEF  59

Query  64   LGFTSHRKKREAKIKKEIKRGIREPNQEDPFELFITLNQIRYVYYKETEKILGNTYGMCI  123
                   KKR+ + KK +KRG  +              +I Y+ YKE+EK+LG TY M +
Sbjct  60   FD----AKKRKKEFKKLVKRGELDI-------------EIEYIDYKESEKVLGQTYDMLV  102

Query  124  LQDFEAITPNLLARTIETVEGGGIVLLLLKGMKSLKQLYTLSMDIHSRYRTEAHDDVVAR  183
            L  FE +TPN L R +ETV GGG+++LLL  + S KQLYT+    H    T  ++DV  R
Sbjct  103  LDLFEDLTPNDLGRLVETVRGGGLIILLLPPLDSWKQLYTI---FHKSLVTPPYEDVKGR  159

Query  184  FNERFILSLGSCDSCLVVD  202
            FN RFI SL   +  L+VD
Sbjct  160  FNRRFIRSLLEHEGILIVD  178


>CDD:461555 pfam05127, Helicase_RecD, Helicase.  This domain contains a P-loop 
(Walker A) motif, suggesting that it has ATPase activity, 
and a Walker B motif. In tRNA(Met) cytidine acetyltransferase 
(TmcA) it may function as an RNA helicase motor (driven 
by ATP hydrolysis) which delivers the wobble base to the active 
centre of the GCN5-related N-acetyltransferase (GNAT) 
domain. It is found in the bacterial exodeoxyribonuclease V 
alpha chain (RecD), which has 5'-3' helicase activity. It is 
structurally similar to the motor domain 1A in other SF1 helicases.
Length=171

 Score = 218 bits (557),  Expect = 3e-66, Method: Composition-based stats.
 Identities = 101/220 (46%), Positives = 128/220 (58%), Gaps = 51/220 (23%)

Query  281  TLTAARGRGKSAALGVAIAAAVAHGYSNIFITSPSPENLKTLFEFIFKGFDALGYLDHVD  340
             +TA RGRGKSAALG+A AA +A GYS I +T+PSP N++TLFEF  KG DALG      
Sbjct  1    VITADRGRGKSAALGLAAAALIAQGYSRIIVTAPSPANVQTLFEFAIKGLDALGLT----  56

Query  341  YTILQSTNPDFNKAIVRVNIHRQHRQTIQYIQPQDAHVL-GQAELLVIDEAAAIPLPLVR  399
                    P F   I+R N      Q I++I P +   L GQA+LLV+DEAAAIPLPL++
Sbjct  57   --------PKFRDGIIRGN-----GQRIRFIAPDELLKLPGQADLLVVDEAAAIPLPLLK  103

Query  400  KLM-GPYLVFMASTINGYEGTGRSLSLKLIQQLREQSRGGLKANGQDDTDIADRATGKAA  458
            +L+ G   V  A+T++GYEGTGR  SLK + QL++Q  G                     
Sbjct  104  QLLRGFPRVVFATTVHGYEGTGRGFSLKFLAQLKKQLPG---------------------  142

Query  459  KSAEKNLGGRSLREITLSEPIRYAPGDSVEKWLNKVLCLD  498
                       LRE+ L+EPIRYA GD +EKWLN +L LD
Sbjct  143  -----------LRELELTEPIRYAEGDPLEKWLNDLLLLD  171



Lambda      K        H        a         alpha
   0.317    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1373399720


Query= TCONS_00000930

Length=517


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00000931

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460058 pfam01090, Ribosomal_S19e, Ribosomal protein S19e          224     1e-77


>CDD:460058 pfam01090, Ribosomal_S19e, Ribosomal protein S19e.  
Length=137

 Score = 224 bits (574),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 70/133 (53%), Positives = 90/133 (68%), Gaps = 1/133 (1%)

Query  5    TVRDVDAQKFIAAYSAFLKRQGKLPIPGWVDTVKTSCSNELPPQDSDWYYVRAAAVARHI  64
            TV+DV A K I A + +LK+ GK+  P W D VKT    EL P D DW+YVRAA++ R +
Sbjct  1    TVKDVPADKLIKALAEYLKKSGKIKPPEWADFVKTGVHKELAPYDPDWWYVRAASILRKV  60

Query  65   YMRKTVGVGRLRKVHGSTKNRGSRPNHHVDASGSVDRKIIQSLEKIGVLEYDEEKGGRRI  124
            Y+R  VGVGRLRKV+G  K RGSRP+H    SGS+ RKI+Q LEK G+++   +  GRR+
Sbjct  61   YLRGPVGVGRLRKVYGGRKRRGSRPSHFAKGSGSIIRKILQQLEKAGLVK-KAKGKGRRL  119

Query  125  TQAGQRDLDRIAK  137
            T  G+  LDRIA 
Sbjct  120  TPKGRSLLDRIAG  132



Lambda      K        H        a         alpha
   0.315    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00006891

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460058 pfam01090, Ribosomal_S19e, Ribosomal protein S19e          224     1e-77


>CDD:460058 pfam01090, Ribosomal_S19e, Ribosomal protein S19e.  
Length=137

 Score = 224 bits (574),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 70/133 (53%), Positives = 90/133 (68%), Gaps = 1/133 (1%)

Query  5    TVRDVDAQKFIAAYSAFLKRQGKLPIPGWVDTVKTSCSNELPPQDSDWYYVRAAAVARHI  64
            TV+DV A K I A + +LK+ GK+  P W D VKT    EL P D DW+YVRAA++ R +
Sbjct  1    TVKDVPADKLIKALAEYLKKSGKIKPPEWADFVKTGVHKELAPYDPDWWYVRAASILRKV  60

Query  65   YMRKTVGVGRLRKVHGSTKNRGSRPNHHVDASGSVDRKIIQSLEKIGVLEYDEEKGGRRI  124
            Y+R  VGVGRLRKV+G  K RGSRP+H    SGS+ RKI+Q LEK G+++   +  GRR+
Sbjct  61   YLRGPVGVGRLRKVYGGRKRRGSRPSHFAKGSGSIIRKILQQLEKAGLVK-KAKGKGRRL  119

Query  125  TQAGQRDLDRIAK  137
            T  G+  LDRIA 
Sbjct  120  TPKGRSLLDRIAG  132



Lambda      K        H        a         alpha
   0.315    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00006892

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460058 pfam01090, Ribosomal_S19e, Ribosomal protein S19e          224     1e-77


>CDD:460058 pfam01090, Ribosomal_S19e, Ribosomal protein S19e.  
Length=137

 Score = 224 bits (574),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 70/133 (53%), Positives = 90/133 (68%), Gaps = 1/133 (1%)

Query  5    TVRDVDAQKFIAAYSAFLKRQGKLPIPGWVDTVKTSCSNELPPQDSDWYYVRAAAVARHI  64
            TV+DV A K I A + +LK+ GK+  P W D VKT    EL P D DW+YVRAA++ R +
Sbjct  1    TVKDVPADKLIKALAEYLKKSGKIKPPEWADFVKTGVHKELAPYDPDWWYVRAASILRKV  60

Query  65   YMRKTVGVGRLRKVHGSTKNRGSRPNHHVDASGSVDRKIIQSLEKIGVLEYDEEKGGRRI  124
            Y+R  VGVGRLRKV+G  K RGSRP+H    SGS+ RKI+Q LEK G+++   +  GRR+
Sbjct  61   YLRGPVGVGRLRKVYGGRKRRGSRPSHFAKGSGSIIRKILQQLEKAGLVK-KAKGKGRRL  119

Query  125  TQAGQRDLDRIAK  137
            T  G+  LDRIA 
Sbjct  120  TPKGRSLLDRIAG  132



Lambda      K        H        a         alpha
   0.315    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00000932

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460058 pfam01090, Ribosomal_S19e, Ribosomal protein S19e          216     3e-73


>CDD:460058 pfam01090, Ribosomal_S19e, Ribosomal protein S19e.  
Length=137

 Score = 216 bits (553),  Expect = 3e-73, Method: Composition-based stats.
 Identities = 66/127 (52%), Positives = 85/127 (67%), Gaps = 1/127 (1%)

Query  85   AQKFIAAYSAFLKRQGKLPIPGWVDTVKTSCSNELPPQDSDWYYVRAAAVARHIYMRKTV  144
            A K I A + +LK+ GK+  P W D VKT    EL P D DW+YVRAA++ R +Y+R  V
Sbjct  7    ADKLIKALAEYLKKSGKIKPPEWADFVKTGVHKELAPYDPDWWYVRAASILRKVYLRGPV  66

Query  145  GVGRLRKVHGSTKNRGSRPNHHVDASGSVDRKIIQSLEKIGVLEYDEEKGGRRITQAGQR  204
            GVGRLRKV+G  K RGSRP+H    SGS+ RKI+Q LEK G+++   +  GRR+T  G+ 
Sbjct  67   GVGRLRKVYGGRKRRGSRPSHFAKGSGSIIRKILQQLEKAGLVK-KAKGKGRRLTPKGRS  125

Query  205  DLDRIAK  211
             LDRIA 
Sbjct  126  LLDRIAG  132



Lambda      K        H        a         alpha
   0.318    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00006893

Length=111
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460058 pfam01090, Ribosomal_S19e, Ribosomal protein S19e          145     4e-47


>CDD:460058 pfam01090, Ribosomal_S19e, Ribosomal protein S19e.  
Length=137

 Score = 145 bits (369),  Expect = 4e-47, Method: Composition-based stats.
 Identities = 46/85 (54%), Positives = 61/85 (72%), Gaps = 1/85 (1%)

Query  17   YYVRAAAVARHIYMRKTVGVGRLRKVHGSTKNRGSRPNHHVDASGSVDRKIIQSLEKIGV  76
            +YVRAA++ R +Y+R  VGVGRLRKV+G  K RGSRP+H    SGS+ RKI+Q LEK G+
Sbjct  49   WYVRAASILRKVYLRGPVGVGRLRKVYGGRKRRGSRPSHFAKGSGSIIRKILQQLEKAGL  108

Query  77   LEYDEEKGGRRITQAGQRDLDRIAK  101
            ++   +  GRR+T  G+  LDRIA 
Sbjct  109  VK-KAKGKGRRLTPKGRSLLDRIAG  132



Lambda      K        H        a         alpha
   0.316    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00006894

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.504    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00000941

Length=1141
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464975 pfam16016, DUF4782, Domain of unknown function (DUF478...  143     3e-40
CDD:465256 pfam16746, BAR_3, BAR domain of APPL family. BAR_12 is...  81.1    2e-17


>CDD:464975 pfam16016, DUF4782, Domain of unknown function (DUF4782).  This 
presumed domain is functionally uncharacterized. This domain 
family is found in eukaryotes, and is approximately 150 
amino acids in length. The family is found in association with 
pfam02893.
Length=147

 Score = 143 bits (363),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 4/150 (3%)

Query  937   LAAEKIFDISPKAIFHILFGDKSAVWQLLLHERRSRDIKQGPWIRNKSRHLRRDIEYHIE  996
             +  +++F IS   +F +LFGD S+  Q  L ER   DI  GPW  ++   L R+I Y   
Sbjct  1     VLLDEVFPISVGKLFELLFGDDSSFLQKFLEERGDTDISVGPWEPDEEGGLTREISYTKP  60

Query  997   TTDLFGRTQDKTISDYQIIDVLNDHLCY-VVTDKRTPWHLPFRRSFRLVSKVVITFVAKG  1055
                  G  Q K   + Q I + +D L   VVT  +TP  +P+  SF + ++  IT+ +  
Sbjct  61    LNGSIGPKQTKCT-ETQTILLEHDDLEVYVVTTTKTP-DVPYGDSFSVETRYCITWGSNN  118

Query  1056  KSKLAVYTKVEWLGSPHGLQRIIEKQATSD  1085
              ++L V T VEW  S   L+  IEK A   
Sbjct  119   STRLQVSTGVEWTKSS-WLKGKIEKGAIDG  147


>CDD:465256 pfam16746, BAR_3, BAR domain of APPL family.  BAR_12 is the BAR 
coiled-coil domain at the N-terminus of APPL or adaptor protein 
containing PH domain, PTB domain, and leucine zipper 
motif proteins in higher eukaryotes. This BAR domain contains 
four helices whereas the other classical BAR domains contain 
only three helices. The first three helices form an antiparallel 
coiled-coil, while the fourth helix, is unique to APPL1. 
BAR domains take part in many varied biological processes 
such as fission of synaptic vesicles, endocytosis, regulation 
of the actin cytoskeleton, transcriptional repression, 
cell-cell fusion, apoptosis, secretory vesicle fusion, and tissue 
differentiation.
Length=235

 Score = 81.1 bits (201),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 42/186 (23%), Positives = 77/186 (41%), Gaps = 19/186 (10%)

Query  25   EAALDSPTFRATTLHFSEQIEYLERWLDGYAKAASKLV---TELATIE----NVMNAFLA  77
            E   DSP FR+       +++ LE+ L    K   +++    E +  +    N +  F  
Sbjct  5    ECLKDSPQFRSLLEEHEAELDELEKKLKKLLKLCKRMIEAGKEYSAAQRLFANSLLDFKF  64

Query  78   YSSNPPIVSEAALDHDYTLQAMSRCGESSKDLWNGLMATAKKMESLISDPIRAFIHDDLR  137
                     E+          + +  +  +++ N       + +  I  P+  F  +DL+
Sbjct  65   EFIGDEETDES----------LKKFSQLLQEMENFHTILLDQAQRTIIKPLENFRKEDLK  114

Query  138  SFKETRRTLDQAQKQYDSLLSRYASQSKSKEPSSLREDAFQLHEARKAYLKASMD--FSV  195
              KE ++  D+A ++ D+ L + A  SK K+PS L E   +L   RK +  AS+D    +
Sbjct  115  EVKELKKKFDKASEKLDAALEKNAQLSKKKKPSELEEADNELAATRKCFHHASLDYVLQI  174

Query  196  QAPQIR  201
               Q R
Sbjct  175  NELQER  180



Lambda      K        H        a         alpha
   0.316    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1457672472


Query= TCONS_00000942

Length=1384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464975 pfam16016, DUF4782, Domain of unknown function (DUF478...  117     5e-31
CDD:465256 pfam16746, BAR_3, BAR domain of APPL family. BAR_12 is...  81.1    2e-17


>CDD:464975 pfam16016, DUF4782, Domain of unknown function (DUF4782).  This 
presumed domain is functionally uncharacterized. This domain 
family is found in eukaryotes, and is approximately 150 
amino acids in length. The family is found in association with 
pfam02893.
Length=147

 Score = 117 bits (296),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 43/149 (29%), Positives = 64/149 (43%), Gaps = 26/149 (17%)

Query  944   LAAEKIFDISPKAIFHILFGDKSAVWQLLLHERRSRDIKQGPWIRNKSRHLRRDIEYHIE  1003
             +  +++F IS   +F +LFGD S+  Q  L ER   DI  GPW  ++   L R+I Y   
Sbjct  1     VLLDEVFPISVGKLFELLFGDDSSFLQKFLEERGDTDISVGPWEPDEEGGLTREISYTKP  60

Query  1004  TTDLF------------------------VTDKRTPWHLPFRRSFRLVSKVVITFVAKGK  1039
                                          VT  +TP  +P+  SF + ++  IT+ +   
Sbjct  61    LNGSIGPKQTKCTETQTILLEHDDLEVYVVTTTKTP-DVPYGDSFSVETRYCITWGSNNS  119

Query  1040  SKLAVYTKVEWLGSPHGLQRIIEKQATSD  1068
             ++L V T VEW  S   L+  IEK A   
Sbjct  120   TRLQVSTGVEWTKSS-WLKGKIEKGAIDG  147


>CDD:465256 pfam16746, BAR_3, BAR domain of APPL family.  BAR_12 is the BAR 
coiled-coil domain at the N-terminus of APPL or adaptor protein 
containing PH domain, PTB domain, and leucine zipper 
motif proteins in higher eukaryotes. This BAR domain contains 
four helices whereas the other classical BAR domains contain 
only three helices. The first three helices form an antiparallel 
coiled-coil, while the fourth helix, is unique to APPL1. 
BAR domains take part in many varied biological processes 
such as fission of synaptic vesicles, endocytosis, regulation 
of the actin cytoskeleton, transcriptional repression, 
cell-cell fusion, apoptosis, secretory vesicle fusion, and tissue 
differentiation.
Length=235

 Score = 81.1 bits (201),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 42/186 (23%), Positives = 77/186 (41%), Gaps = 19/186 (10%)

Query  32   EAALDSPTFRATTLHFSEQIEYLERWLDGYAKAASKLV---TELATIE----NVMNAFLA  84
            E   DSP FR+       +++ LE+ L    K   +++    E +  +    N +  F  
Sbjct  5    ECLKDSPQFRSLLEEHEAELDELEKKLKKLLKLCKRMIEAGKEYSAAQRLFANSLLDFKF  64

Query  85   YSSNPPIVSEAALDHDYTLQAMSRCGESSKDLWNGLMATAKKMESLISDPIRAFIHDDLR  144
                     E+          + +  +  +++ N       + +  I  P+  F  +DL+
Sbjct  65   EFIGDEETDES----------LKKFSQLLQEMENFHTILLDQAQRTIIKPLENFRKEDLK  114

Query  145  SFKETRRTLDQAQKQYDSLLSRYASQSKSKEPSSLREDAFQLHEARKAYLKASMD--FSV  202
              KE ++  D+A ++ D+ L + A  SK K+PS L E   +L   RK +  AS+D    +
Sbjct  115  EVKELKKKFDKASEKLDAALEKNAQLSKKKKPSELEEADNELAATRKCFHHASLDYVLQI  174

Query  203  QAPQIR  208
               Q R
Sbjct  175  NELQER  180



Lambda      K        H        a         alpha
   0.317    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1770307600


Query= TCONS_00006897

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462479 pfam08449, UAA, UAA transporter family. This family in...  128     1e-34


>CDD:462479 pfam08449, UAA, UAA transporter family.  This family includes 
transporters with a specificity for UDP-N-acetylglucosamine.
Length=307

 Score = 128 bits (325),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 87/364 (24%), Positives = 138/364 (38%), Gaps = 72/364 (20%)

Query  65   QLAICVLGIYASFLSWGVLQEAITTVNFPVRPPTAEEPNPPTERFTFSIVLNTIQSTFAA  124
            Q  + V G++    S GVLQE I  V                E   F  +L   Q  F A
Sbjct  1    QFLLAVSGVFGGCCSNGVLQELIMKV----------------EPGPFGNLLTFAQFLFYA  44

Query  125  ITGFLYLYFSTPAGKKVPSIFPTRKILFPL---LLVSISSSLASPFGYASLA-HIDYLTF  180
            + G        P    + +    +    PL   +++     + S     +L   I Y T 
Sbjct  45   LEGL-------PESIDIFTSKFLKPRKIPLKTYVILVALFFITSVLNNEALKYDISYPTH  97

Query  181  ILAKSCKLLPVMFLHLTIFRKTYPLYKYGVVLLVTLGVATFTLHHPGTSKKVAASAAKNQ  240
            I+ +S KL+PVM + + I  K Y   +Y    LVTLG+  FTL         +  +    
Sbjct  98   IIFRSSKLIPVMIMGILILGKRYSKLQYLSAFLVTLGIIIFTLFSAKDKVADSVVSPNF-  156

Query  241  SGSSLYGIFLLSINLLLDGLTNTTQDHVFSSPQIYTRFTGP--QMMVAQNILSTILTTTY  298
                L GI +LS  LLLD      Q+        Y ++     +M+   ++LS      +
Sbjct  157  ---FLIGIAMLSGALLLDAFLGNYQEK------TYKKYGKHSKEMLFYSHLLSLP----F  203

Query  299  LLVMPHLSSTGALHALLPIPIPPSTETELASAVSFLSRHPEVMKN--------VLGFAAC  350
             L++                     + +L SAV F S+ P+            +L     
Sbjct  204  FLLL---------------------QGDLFSAVQFCSQSPDKAVLSLPSMLFYLLLNVLT  242

Query  351  GAIGQLFIFYTLSRFSSLLLVTVTVTRKMLTMLLSVFWFGHTLSAGQWLGIGLVFGGIGA  410
              +    +F  +S F +L +  VT  RK +++LLS+  FG+  +   W+G  LVF G   
Sbjct  243  QYVCIRGVFILISEFGALTVTLVTTLRKFVSLLLSILLFGNPFTLQHWVGTLLVFLGTFL  302

Query  411  EAVV  414
             +  
Sbjct  303  YSYS  306



Lambda      K        H        a         alpha
   0.321    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00000943

Length=984
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465256 pfam16746, BAR_3, BAR domain of APPL family. BAR_12 is...  81.8    8e-18
CDD:459697 pfam00169, PH, PH domain. PH stands for pleckstrin hom...  59.1    4e-11


>CDD:465256 pfam16746, BAR_3, BAR domain of APPL family.  BAR_12 is the BAR 
coiled-coil domain at the N-terminus of APPL or adaptor protein 
containing PH domain, PTB domain, and leucine zipper 
motif proteins in higher eukaryotes. This BAR domain contains 
four helices whereas the other classical BAR domains contain 
only three helices. The first three helices form an antiparallel 
coiled-coil, while the fourth helix, is unique to APPL1. 
BAR domains take part in many varied biological processes 
such as fission of synaptic vesicles, endocytosis, regulation 
of the actin cytoskeleton, transcriptional repression, 
cell-cell fusion, apoptosis, secretory vesicle fusion, and tissue 
differentiation.
Length=235

 Score = 81.8 bits (203),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 42/186 (23%), Positives = 77/186 (41%), Gaps = 19/186 (10%)

Query  25   EAALDSPTFRATTLHFSEQIEYLERWLDGYAKAASKLV---TELATIE----NVMNAFLA  77
            E   DSP FR+       +++ LE+ L    K   +++    E +  +    N +  F  
Sbjct  5    ECLKDSPQFRSLLEEHEAELDELEKKLKKLLKLCKRMIEAGKEYSAAQRLFANSLLDFKF  64

Query  78   YSSNPPIVSEAALDHDYTLQAMSRCGESSKDLWNGLMATAKKMESLISDPIRAFIHDDLR  137
                     E+          + +  +  +++ N       + +  I  P+  F  +DL+
Sbjct  65   EFIGDEETDES----------LKKFSQLLQEMENFHTILLDQAQRTIIKPLENFRKEDLK  114

Query  138  SFKETRRTLDQAQKQYDSLLSRYASQSKSKEPSSLREDAFQLHEARKAYLKASMD--FSV  195
              KE ++  D+A ++ D+ L + A  SK K+PS L E   +L   RK +  AS+D    +
Sbjct  115  EVKELKKKFDKASEKLDAALEKNAQLSKKKKPSELEEADNELAATRKCFHHASLDYVLQI  174

Query  196  QAPQIR  201
               Q R
Sbjct  175  NELQER  180


>CDD:459697 pfam00169, PH, PH domain.  PH stands for pleckstrin homology.
Length=105

 Score = 59.1 bits (143),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 14/110 (13%)

Query  306  PEKQGWVYLRTLSGKPTRTVWLRRWAFLKNGIFGCLVLGSRTGGVEESER-----IGVLL  360
              K+GW+  +    K +   W +R+  L +G    L       G  +  +      G  +
Sbjct  1    VVKEGWLLKKGGGKKKS---WKKRYFVLFDGSL--LYYKDDKSGKSKEPKGSISLSGCEV  55

Query  361  CSIRPAFQEERRFCFEVKT----KSNTIVLQAETQKELTEWIAAFEAAKR  406
              +  +   +R+FCFE++T       T +LQAE+++E  +WI A ++A R
Sbjct  56   VEVVASDSPKRKFCFELRTGERTGKRTYLLQAESEEERKDWIKAIQSAIR  105



Lambda      K        H        a         alpha
   0.315    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1257297888


Query= TCONS_00000944

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462479 pfam08449, UAA, UAA transporter family. This family in...  128     1e-34


>CDD:462479 pfam08449, UAA, UAA transporter family.  This family includes 
transporters with a specificity for UDP-N-acetylglucosamine.
Length=307

 Score = 128 bits (325),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 87/364 (24%), Positives = 138/364 (38%), Gaps = 72/364 (20%)

Query  65   QLAICVLGIYASFLSWGVLQEAITTVNFPVRPPTAEEPNPPTERFTFSIVLNTIQSTFAA  124
            Q  + V G++    S GVLQE I  V                E   F  +L   Q  F A
Sbjct  1    QFLLAVSGVFGGCCSNGVLQELIMKV----------------EPGPFGNLLTFAQFLFYA  44

Query  125  ITGFLYLYFSTPAGKKVPSIFPTRKILFPL---LLVSISSSLASPFGYASLA-HIDYLTF  180
            + G        P    + +    +    PL   +++     + S     +L   I Y T 
Sbjct  45   LEGL-------PESIDIFTSKFLKPRKIPLKTYVILVALFFITSVLNNEALKYDISYPTH  97

Query  181  ILAKSCKLLPVMFLHLTIFRKTYPLYKYGVVLLVTLGVATFTLHHPGTSKKVAASAAKNQ  240
            I+ +S KL+PVM + + I  K Y   +Y    LVTLG+  FTL         +  +    
Sbjct  98   IIFRSSKLIPVMIMGILILGKRYSKLQYLSAFLVTLGIIIFTLFSAKDKVADSVVSPNF-  156

Query  241  SGSSLYGIFLLSINLLLDGLTNTTQDHVFSSPQIYTRFTGP--QMMVAQNILSTILTTTY  298
                L GI +LS  LLLD      Q+        Y ++     +M+   ++LS      +
Sbjct  157  ---FLIGIAMLSGALLLDAFLGNYQEK------TYKKYGKHSKEMLFYSHLLSLP----F  203

Query  299  LLVMPHLSSTGALHALLPIPIPPSTETELASAVSFLSRHPEVMKN--------VLGFAAC  350
             L++                     + +L SAV F S+ P+            +L     
Sbjct  204  FLLL---------------------QGDLFSAVQFCSQSPDKAVLSLPSMLFYLLLNVLT  242

Query  351  GAIGQLFIFYTLSRFSSLLLVTVTVTRKMLTMLLSVFWFGHTLSAGQWLGIGLVFGGIGA  410
              +    +F  +S F +L +  VT  RK +++LLS+  FG+  +   W+G  LVF G   
Sbjct  243  QYVCIRGVFILISEFGALTVTLVTTLRKFVSLLLSILLFGNPFTLQHWVGTLLVFLGTFL  302

Query  411  EAVV  414
             +  
Sbjct  303  YSYS  306



Lambda      K        H        a         alpha
   0.321    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00000946

Length=244


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00000947

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00006898

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00006899

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00000948

Length=1256
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               73.2    3e-16
CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies)            57.3    4e-11


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 73.2 bits (180),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 35/90 (39%), Positives = 46/90 (51%), Gaps = 9/90 (10%)

Query  341  AAMARHAE-------RPEDLNVADNAGNTPLQIAALEGCAPIVKFLLEAGCDIDTKNIDK  393
            AA   + E          D N+ D  G T L +AA  G   IVK LLE   D++ K+ + 
Sbjct  4    AAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLKD-NG  61

Query  394  DTPLIDAVENGHLEVVKLLLEAGANPRTVN  423
             T L  A  +GHLE+VKLLLE GA+    +
Sbjct  62   RTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 64.8 bits (158),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 33/51 (65%), Gaps = 0/51 (0%)

Query  364  LQIAALEGCAPIVKFLLEAGCDIDTKNIDKDTPLIDAVENGHLEVVKLLLE  414
            L +AA  G   +VK LLE G D + ++ +  T L  A +NGHLE+VKLLLE
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE  51


>CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies).  
Length=54

 Score = 57.3 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 22/54 (41%), Positives = 32/54 (59%), Gaps = 0/54 (0%)

Query  360  GNTPLQIAALEGCAPIVKFLLEAGCDIDTKNIDKDTPLIDAVENGHLEVVKLLL  413
              T L  AA  G   +++ LLE G DI+  + + +T L  A  NG++EV+KLLL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54



Lambda      K        H        a         alpha
   0.310    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1594102800


Query= TCONS_00000949

Length=1256
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               73.2    3e-16
CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies)            57.3    4e-11


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 73.2 bits (180),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 35/90 (39%), Positives = 46/90 (51%), Gaps = 9/90 (10%)

Query  341  AAMARHAE-------RPEDLNVADNAGNTPLQIAALEGCAPIVKFLLEAGCDIDTKNIDK  393
            AA   + E          D N+ D  G T L +AA  G   IVK LLE   D++ K+ + 
Sbjct  4    AAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLKD-NG  61

Query  394  DTPLIDAVENGHLEVVKLLLEAGANPRTVN  423
             T L  A  +GHLE+VKLLLE GA+    +
Sbjct  62   RTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 64.8 bits (158),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 33/51 (65%), Gaps = 0/51 (0%)

Query  364  LQIAALEGCAPIVKFLLEAGCDIDTKNIDKDTPLIDAVENGHLEVVKLLLE  414
            L +AA  G   +VK LLE G D + ++ +  T L  A +NGHLE+VKLLLE
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE  51


>CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies).  
Length=54

 Score = 57.3 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 22/54 (41%), Positives = 32/54 (59%), Gaps = 0/54 (0%)

Query  360  GNTPLQIAALEGCAPIVKFLLEAGCDIDTKNIDKDTPLIDAVENGHLEVVKLLL  413
              T L  AA  G   +++ LLE G DI+  + + +T L  A  NG++EV+KLLL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54



Lambda      K        H        a         alpha
   0.310    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1594102800


Query= TCONS_00000950

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e...  105     4e-31


>CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family.  This family includes: Ribosomal L7A from metazoa, 
Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein 
HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, 
Ribosomal protein L30 from eukaryotes and archaebacteria. 
Gadd45 and MyD118.
Length=95

 Score = 105 bits (265),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 37/96 (39%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query  35   DALKGVLRIALIHDGLARGLREAAKALDRRQAHMCVLNEGCEEEAYKKLVIALCSEHKIP  94
            DA+  VL+ AL    L  GL+E  KAL+R +A + ++ E C+ E   KL+ ALC E  +P
Sbjct  1    DAIYEVLKKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDPEEKVKLIPALCKEKNVP  60

Query  95   LIKVPDGKMLGEWVGLCQLDREGNARKVVNCSCVVV  130
             +KVP  K LGE  G  +      A K    S ++V
Sbjct  61   YVKVPSKKELGEACGKKRP-VSALAIKDEGDSKILV  95



Lambda      K        H        a         alpha
   0.316    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00000951

Length=1197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               73.2    3e-16
CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies)            57.3    4e-11


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 73.2 bits (180),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 35/90 (39%), Positives = 46/90 (51%), Gaps = 9/90 (10%)

Query  341  AAMARHAE-------RPEDLNVADNAGNTPLQIAALEGCAPIVKFLLEAGCDIDTKNIDK  393
            AA   + E          D N+ D  G T L +AA  G   IVK LLE   D++ K+ + 
Sbjct  4    AAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLKD-NG  61

Query  394  DTPLIDAVENGHLEVVKLLLEAGANPRTVN  423
             T L  A  +GHLE+VKLLLE GA+    +
Sbjct  62   RTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 64.8 bits (158),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 33/51 (65%), Gaps = 0/51 (0%)

Query  364  LQIAALEGCAPIVKFLLEAGCDIDTKNIDKDTPLIDAVENGHLEVVKLLLE  414
            L +AA  G   +VK LLE G D + ++ +  T L  A +NGHLE+VKLLLE
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE  51


>CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies).  
Length=54

 Score = 57.3 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 22/54 (41%), Positives = 32/54 (59%), Gaps = 0/54 (0%)

Query  360  GNTPLQIAALEGCAPIVKFLLEAGCDIDTKNIDKDTPLIDAVENGHLEVVKLLL  413
              T L  AA  G   +++ LLE G DI+  + + +T L  A  NG++EV+KLLL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54



Lambda      K        H        a         alpha
   0.310    0.126    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1535861800


Query= TCONS_00006901

Length=148
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e...  104     6e-31


>CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family.  This family includes: Ribosomal L7A from metazoa, 
Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein 
HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, 
Ribosomal protein L30 from eukaryotes and archaebacteria. 
Gadd45 and MyD118.
Length=95

 Score = 104 bits (263),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 37/96 (39%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query  35   DALKGVLRIALIHDGLARGLREAAKALDRRQAHMCVLNEGCEEEAYKKLVIALCSEHKIP  94
            DA+  VL+ AL    L  GL+E  KAL+R +A + ++ E C+ E   KL+ ALC E  +P
Sbjct  1    DAIYEVLKKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDPEEKVKLIPALCKEKNVP  60

Query  95   LIKVPDGKMLGEWVGLCQLDREGNARKVVNCSCVVV  130
             +KVP  K LGE  G  +      A K    S ++V
Sbjct  61   YVKVPSKKELGEACGKKRP-VSALAIKDEGDSKILV  95



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00000952

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463862 pfam13378, MR_MLE_C, Enolase C-terminal domain-like. T...  242     8e-80
CDD:397046 pfam02746, MR_MLE_N, Mandelate racemase / muconate lac...  79.1    1e-18


>CDD:463862 pfam13378, MR_MLE_C, Enolase C-terminal domain-like.  This domain 
appears at the C-terminus of many of the proteins that 
carry the MR_MLE_N pfam02746 domain. EC:4.2.1.40.
Length=217

 Score = 242 bits (620),  Expect = 8e-80, Method: Composition-based stats.
 Identities = 85/232 (37%), Positives = 123/232 (53%), Gaps = 20/232 (9%)

Query  129  VEAAGKARLAQGFKAIKMNATEDINWLDSPSVLDSCVERLKAV-KALGLDAAL--DFHGR  185
               A +A  A+GF+A K+               +  VER++AV +A+G    L  D +G 
Sbjct  3    AAEARRAVEARGFRAFKLKVGGP--------DPEEDVERVRAVREAVGPGVDLMVDANGA  54

Query  186  LHKPMAKQLAKALEPHRPLFLEEPLLSEHPEGIKQLADQVSCPIALGERLYNRWDVKRFL  245
                 A +LA+ALE    L++EEP+  +  EG+ +L      PIA GE LY+R D +R L
Sbjct  55   WSVAEAIRLARALEELGLLWIEEPVPPDDLEGLARLRRATPVPIATGESLYSREDFRRLL  114

Query  246  EDASVDILQPDISHCGGISELRRIASMAETYDVAIAPHCPLGPIALAACMQVDLSTPNFV  305
            E  +VDI+QPD++  GGI+E  +IA++AE + V +APH   GPI LAA + +  + PN +
Sbjct  115  EAGAVDIVQPDVTRVGGITEALKIAALAEAFGVPVAPHSGGGPIGLAASLHLAAAVPNLL  174

Query  306  IQEMSLGIHYNTEAGEYDITSYVKDPSVFEVKDGYVDALTGPGLGIEVDEEV  357
            IQE  L                       EV+DG V    GPGLG+E+DE+ 
Sbjct  175  IQEYFLDPLLLE---------DDLLTEPLEVEDGRVAVPDGPGLGVELDEDA  217


>CDD:397046 pfam02746, MR_MLE_N, Mandelate racemase / muconate lactonizing 
enzyme, N-terminal domain.  SCOP reports fold similarity with 
enolase N-terminal domain.
Length=117

 Score = 79.1 bits (195),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query  15   RWLFVKIVDEEGHYGWGESTLEGHT-EAVEGTLNA-LCKRFQGYEADDIEHIWQMAWRLG  72
              + V+I   EG  G GE+T  G   E ++  L+  L     G +A +I  +WQ+ +R  
Sbjct  27   SLVIVRIETSEGVVGIGEATSYGGRAETIKAILDDHLAPLLIGRDAANISDLWQLMYRAA  86

Query  73   FYRGGPVFMSAISGIDIALWDLKGRRLGVPVHQLLG  108
                    MSA + ID+ALWDLK + L +P+  LLG
Sbjct  87   LGN-----MSAKAAIDMALWDLKAKVLNLPLADLLG  117



Lambda      K        H        a         alpha
   0.320    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00000953

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e...  105     4e-31


>CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family.  This family includes: Ribosomal L7A from metazoa, 
Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein 
HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, 
Ribosomal protein L30 from eukaryotes and archaebacteria. 
Gadd45 and MyD118.
Length=95

 Score = 105 bits (265),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 36/95 (38%), Positives = 50/95 (53%), Gaps = 1/95 (1%)

Query  35   DALKGVLRIALIHDGLARGLREAAKALDRRQAHMCVLNEGCEEEAYKKLVIALCSEHKIP  94
            DA+  VL+ AL    L  GL+E  KAL+R +A + ++ E C+ E   KL+ ALC E  +P
Sbjct  1    DAIYEVLKKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDPEEKVKLIPALCKEKNVP  60

Query  95   LIKVPDGKMLGEWVGLCQLDREGNARKVVNCSCVA  129
             +KVP  K LGE  G  +      A K    S + 
Sbjct  61   YVKVPSKKELGEACGKKRP-VSALAIKDEGDSKIL  94



Lambda      K        H        a         alpha
   0.318    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0637    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00000954

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463862 pfam13378, MR_MLE_C, Enolase C-terminal domain-like. T...  242     8e-80
CDD:397046 pfam02746, MR_MLE_N, Mandelate racemase / muconate lac...  79.1    1e-18


>CDD:463862 pfam13378, MR_MLE_C, Enolase C-terminal domain-like.  This domain 
appears at the C-terminus of many of the proteins that 
carry the MR_MLE_N pfam02746 domain. EC:4.2.1.40.
Length=217

 Score = 242 bits (620),  Expect = 8e-80, Method: Composition-based stats.
 Identities = 85/232 (37%), Positives = 123/232 (53%), Gaps = 20/232 (9%)

Query  129  VEAAGKARLAQGFKAIKMNATEDINWLDSPSVLDSCVERLKAV-KALGLDAAL--DFHGR  185
               A +A  A+GF+A K+               +  VER++AV +A+G    L  D +G 
Sbjct  3    AAEARRAVEARGFRAFKLKVGGP--------DPEEDVERVRAVREAVGPGVDLMVDANGA  54

Query  186  LHKPMAKQLAKALEPHRPLFLEEPLLSEHPEGIKQLADQVSCPIALGERLYNRWDVKRFL  245
                 A +LA+ALE    L++EEP+  +  EG+ +L      PIA GE LY+R D +R L
Sbjct  55   WSVAEAIRLARALEELGLLWIEEPVPPDDLEGLARLRRATPVPIATGESLYSREDFRRLL  114

Query  246  EDASVDILQPDISHCGGISELRRIASMAETYDVAIAPHCPLGPIALAACMQVDLSTPNFV  305
            E  +VDI+QPD++  GGI+E  +IA++AE + V +APH   GPI LAA + +  + PN +
Sbjct  115  EAGAVDIVQPDVTRVGGITEALKIAALAEAFGVPVAPHSGGGPIGLAASLHLAAAVPNLL  174

Query  306  IQEMSLGIHYNTEAGEYDITSYVKDPSVFEVKDGYVDALTGPGLGIEVDEEV  357
            IQE  L                       EV+DG V    GPGLG+E+DE+ 
Sbjct  175  IQEYFLDPLLLE---------DDLLTEPLEVEDGRVAVPDGPGLGVELDEDA  217


>CDD:397046 pfam02746, MR_MLE_N, Mandelate racemase / muconate lactonizing 
enzyme, N-terminal domain.  SCOP reports fold similarity with 
enolase N-terminal domain.
Length=117

 Score = 79.1 bits (195),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query  15   RWLFVKIVDEEGHYGWGESTLEGHT-EAVEGTLNA-LCKRFQGYEADDIEHIWQMAWRLG  72
              + V+I   EG  G GE+T  G   E ++  L+  L     G +A +I  +WQ+ +R  
Sbjct  27   SLVIVRIETSEGVVGIGEATSYGGRAETIKAILDDHLAPLLIGRDAANISDLWQLMYRAA  86

Query  73   FYRGGPVFMSAISGIDIALWDLKGRRLGVPVHQLLG  108
                    MSA + ID+ALWDLK + L +P+  LLG
Sbjct  87   LGN-----MSAKAAIDMALWDLKAKVLNLPLADLLG  117



Lambda      K        H        a         alpha
   0.320    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00000955

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463862 pfam13378, MR_MLE_C, Enolase C-terminal domain-like. T...  242     8e-80
CDD:397046 pfam02746, MR_MLE_N, Mandelate racemase / muconate lac...  79.1    1e-18


>CDD:463862 pfam13378, MR_MLE_C, Enolase C-terminal domain-like.  This domain 
appears at the C-terminus of many of the proteins that 
carry the MR_MLE_N pfam02746 domain. EC:4.2.1.40.
Length=217

 Score = 242 bits (620),  Expect = 8e-80, Method: Composition-based stats.
 Identities = 85/232 (37%), Positives = 123/232 (53%), Gaps = 20/232 (9%)

Query  129  VEAAGKARLAQGFKAIKMNATEDINWLDSPSVLDSCVERLKAV-KALGLDAAL--DFHGR  185
               A +A  A+GF+A K+               +  VER++AV +A+G    L  D +G 
Sbjct  3    AAEARRAVEARGFRAFKLKVGGP--------DPEEDVERVRAVREAVGPGVDLMVDANGA  54

Query  186  LHKPMAKQLAKALEPHRPLFLEEPLLSEHPEGIKQLADQVSCPIALGERLYNRWDVKRFL  245
                 A +LA+ALE    L++EEP+  +  EG+ +L      PIA GE LY+R D +R L
Sbjct  55   WSVAEAIRLARALEELGLLWIEEPVPPDDLEGLARLRRATPVPIATGESLYSREDFRRLL  114

Query  246  EDASVDILQPDISHCGGISELRRIASMAETYDVAIAPHCPLGPIALAACMQVDLSTPNFV  305
            E  +VDI+QPD++  GGI+E  +IA++AE + V +APH   GPI LAA + +  + PN +
Sbjct  115  EAGAVDIVQPDVTRVGGITEALKIAALAEAFGVPVAPHSGGGPIGLAASLHLAAAVPNLL  174

Query  306  IQEMSLGIHYNTEAGEYDITSYVKDPSVFEVKDGYVDALTGPGLGIEVDEEV  357
            IQE  L                       EV+DG V    GPGLG+E+DE+ 
Sbjct  175  IQEYFLDPLLLE---------DDLLTEPLEVEDGRVAVPDGPGLGVELDEDA  217


>CDD:397046 pfam02746, MR_MLE_N, Mandelate racemase / muconate lactonizing 
enzyme, N-terminal domain.  SCOP reports fold similarity with 
enolase N-terminal domain.
Length=117

 Score = 79.1 bits (195),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query  15   RWLFVKIVDEEGHYGWGESTLEGHT-EAVEGTLNA-LCKRFQGYEADDIEHIWQMAWRLG  72
              + V+I   EG  G GE+T  G   E ++  L+  L     G +A +I  +WQ+ +R  
Sbjct  27   SLVIVRIETSEGVVGIGEATSYGGRAETIKAILDDHLAPLLIGRDAANISDLWQLMYRAA  86

Query  73   FYRGGPVFMSAISGIDIALWDLKGRRLGVPVHQLLG  108
                    MSA + ID+ALWDLK + L +P+  LLG
Sbjct  87   LGN-----MSAKAAIDMALWDLKAKVLNLPLADLLG  117



Lambda      K        H        a         alpha
   0.320    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00000956

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460484 pfam02194, PXA, PXA domain. This domain is associated ...  186     1e-57


>CDD:460484 pfam02194, PXA, PXA domain.  This domain is associated with PX 
domains pfam00787.
Length=181

 Score = 186 bits (475),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 76/206 (37%), Positives = 107/206 (52%), Gaps = 28/206 (14%)

Query  101  SNEVDLQLYALIAIIIKEFVLSWYSKITSDQNLVKEVIQVIAHCTRAFEQRLRETDIAQL  160
            S EVD  L  LI +II++FV SWYSKI+SD     EV Q + H  R   QRLR+ D+A L
Sbjct  1    SPEVDAALDELIDLIIRDFVQSWYSKISSDPEFPNEVRQTLRHALRELSQRLRKVDLASL  60

Query  161  IFDEIPGLIEAHIICEISPYSSWLVFYTHARNLAYRLARDEST---LSGLSPSVRETYHA  217
            +   +  L+ +H+                     YR A +      L+ L  ++   Y A
Sbjct  61   LLSRLLPLLTSHLE-------------------DYRKAEEAVRGKKLNELDLALASKYLA  101

Query  218  LHPHPSLSPIPDSSDMRTIEKQRENEAIYRQLLAHGMLAILLPTEDLENVPLRTIIGDIL  277
            L PHP+LSP+  SS      + RE E  Y +LL  G+L +LLP EDLE+ P+R ++ +IL
Sbjct  102  LKPHPALSPVLLSSS-----QSREAEQKYLRLLVDGLLPLLLPPEDLESRPVRVLVREIL  156

Query  278  ADLILGNAVSEKMCQGWFLWETTTKL  303
            A L+L   +  K+    F+ E   KL
Sbjct  157  ACLVLLPVI-NKLSDPDFINELIVKL  181



Lambda      K        H        a         alpha
   0.317    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00006903

Length=674
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460484 pfam02194, PXA, PXA domain. This domain is associated ...  201     2e-61


>CDD:460484 pfam02194, PXA, PXA domain.  This domain is associated with PX 
domains pfam00787.
Length=181

 Score = 201 bits (513),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 76/187 (41%), Positives = 107/187 (57%), Gaps = 9/187 (5%)

Query  101  SNEVDLQLYALIAIIIKEFVLSWYSKITSDQNLVKEVIQVIAHCTRAFEQRLRETDIAQL  160
            S EVD  L  LI +II++FV SWYSKI+SD     EV Q + H  R   QRLR+ D+A L
Sbjct  1    SPEVDAALDELIDLIIRDFVQSWYSKISSDPEFPNEVRQTLRHALRELSQRLRKVDLASL  60

Query  161  IFDEIPGLIEAHIISYRLARDEST---LSGLSPSVRETYHALHPHPSLSPIPDSSDMRTI  217
            +   +  L+ +H+  YR A +      L+ L  ++   Y AL PHP+LSP+  SS     
Sbjct  61   LLSRLLPLLTSHLEDYRKAEEAVRGKKLNELDLALASKYLALKPHPALSPVLLSSS----  116

Query  218  EKQRENEAIYRQLLAHGMLAILLPTEDLENVPLRTIIGDILADLILGNAVSEKMCQGWFL  277
             + RE E  Y +LL  G+L +LLP EDLE+ P+R ++ +ILA L+L   +  K+    F+
Sbjct  117  -QSREAEQKYLRLLVDGLLPLLLPPEDLESRPVRVLVREILACLVLLPVI-NKLSDPDFI  174

Query  278  WETTTKL  284
             E   KL
Sbjct  175  NELIVKL  181



Lambda      K        H        a         alpha
   0.315    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 856852990


Query= TCONS_00006904

Length=693
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460484 pfam02194, PXA, PXA domain. This domain is associated ...  189     5e-57


>CDD:460484 pfam02194, PXA, PXA domain.  This domain is associated with PX 
domains pfam00787.
Length=181

 Score = 189 bits (483),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 76/206 (37%), Positives = 107/206 (52%), Gaps = 28/206 (14%)

Query  101  SNEVDLQLYALIAIIIKEFVLSWYSKITSDQNLVKEVIQVIAHCTRAFEQRLRETDIAQL  160
            S EVD  L  LI +II++FV SWYSKI+SD     EV Q + H  R   QRLR+ D+A L
Sbjct  1    SPEVDAALDELIDLIIRDFVQSWYSKISSDPEFPNEVRQTLRHALRELSQRLRKVDLASL  60

Query  161  IFDEIPGLIEAHIICEISPYSSWLVFYTHARNLAYRLARDEST---LSGLSPSVRETYHA  217
            +   +  L+ +H+                     YR A +      L+ L  ++   Y A
Sbjct  61   LLSRLLPLLTSHLE-------------------DYRKAEEAVRGKKLNELDLALASKYLA  101

Query  218  LHPHPSLSPIPDSSDMRTIEKQRENEAIYRQLLAHGMLAILLPTEDLENVPLRTIIGDIL  277
            L PHP+LSP+  SS      + RE E  Y +LL  G+L +LLP EDLE+ P+R ++ +IL
Sbjct  102  LKPHPALSPVLLSSS-----QSREAEQKYLRLLVDGLLPLLLPPEDLESRPVRVLVREIL  156

Query  278  ADLILGNAVSEKMCQGWFLWETTTKL  303
            A L+L   +  K+    F+ E   KL
Sbjct  157  ACLVLLPVI-NKLSDPDFINELIVKL  181



Lambda      K        H        a         alpha
   0.316    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 884874000


Query= TCONS_00000957

Length=674
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460484 pfam02194, PXA, PXA domain. This domain is associated ...  201     2e-61


>CDD:460484 pfam02194, PXA, PXA domain.  This domain is associated with PX 
domains pfam00787.
Length=181

 Score = 201 bits (513),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 76/187 (41%), Positives = 107/187 (57%), Gaps = 9/187 (5%)

Query  101  SNEVDLQLYALIAIIIKEFVLSWYSKITSDQNLVKEVIQVIAHCTRAFEQRLRETDIAQL  160
            S EVD  L  LI +II++FV SWYSKI+SD     EV Q + H  R   QRLR+ D+A L
Sbjct  1    SPEVDAALDELIDLIIRDFVQSWYSKISSDPEFPNEVRQTLRHALRELSQRLRKVDLASL  60

Query  161  IFDEIPGLIEAHIISYRLARDEST---LSGLSPSVRETYHALHPHPSLSPIPDSSDMRTI  217
            +   +  L+ +H+  YR A +      L+ L  ++   Y AL PHP+LSP+  SS     
Sbjct  61   LLSRLLPLLTSHLEDYRKAEEAVRGKKLNELDLALASKYLALKPHPALSPVLLSSS----  116

Query  218  EKQRENEAIYRQLLAHGMLAILLPTEDLENVPLRTIIGDILADLILGNAVSEKMCQGWFL  277
             + RE E  Y +LL  G+L +LLP EDLE+ P+R ++ +ILA L+L   +  K+    F+
Sbjct  117  -QSREAEQKYLRLLVDGLLPLLLPPEDLESRPVRVLVREILACLVLLPVI-NKLSDPDFI  174

Query  278  WETTTKL  284
             E   KL
Sbjct  175  NELIVKL  181



Lambda      K        H        a         alpha
   0.315    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 856852990


Query= TCONS_00000958

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460484 pfam02194, PXA, PXA domain. This domain is associated ...  198     2e-62


>CDD:460484 pfam02194, PXA, PXA domain.  This domain is associated with PX 
domains pfam00787.
Length=181

 Score = 198 bits (505),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 76/187 (41%), Positives = 107/187 (57%), Gaps = 9/187 (5%)

Query  101  SNEVDLQLYALIAIIIKEFVLSWYSKITSDQNLVKEVIQVIAHCTRAFEQRLRETDIAQL  160
            S EVD  L  LI +II++FV SWYSKI+SD     EV Q + H  R   QRLR+ D+A L
Sbjct  1    SPEVDAALDELIDLIIRDFVQSWYSKISSDPEFPNEVRQTLRHALRELSQRLRKVDLASL  60

Query  161  IFDEIPGLIEAHIISYRLARDEST---LSGLSPSVRETYHALHPHPSLSPIPDSSDMRTI  217
            +   +  L+ +H+  YR A +      L+ L  ++   Y AL PHP+LSP+  SS     
Sbjct  61   LLSRLLPLLTSHLEDYRKAEEAVRGKKLNELDLALASKYLALKPHPALSPVLLSSS----  116

Query  218  EKQRENEAIYRQLLAHGMLAILLPTEDLENVPLRTIIGDILADLILGNAVSEKMCQGWFL  277
             + RE E  Y +LL  G+L +LLP EDLE+ P+R ++ +ILA L+L   +  K+    F+
Sbjct  117  -QSREAEQKYLRLLVDGLLPLLLPPEDLESRPVRVLVREILACLVLLPVI-NKLSDPDFI  174

Query  278  WETTTKL  284
             E   KL
Sbjct  175  NELIVKL  181



Lambda      K        H        a         alpha
   0.317    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00000959

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00000960

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460850 pfam03221, HTH_Tnp_Tc5, Tc5 transposase DNA-binding do...  76.9    2e-18


>CDD:460850 pfam03221, HTH_Tnp_Tc5, Tc5 transposase DNA-binding domain.  

Length=63

 Score = 76.9 bits (190),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 0/61 (0%)

Query  46   PDIEKALSNWVRNYQKQGYPLSDEMIREKALFFASTCGSPDGKEKVLTQSWLEKFKLKNN  105
            PD+EKAL  W+   + +G P++  MIREKAL  A         +   ++ WL++FK ++ 
Sbjct  2    PDLEKALYEWILQLRARGIPITGPMIREKALELAQLAADLGEPDFKASKGWLDRFKKRHG  61

Query  106  L  106
            +
Sbjct  62   I  62



Lambda      K        H        a         alpha
   0.308    0.123    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00006906

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460850 pfam03221, HTH_Tnp_Tc5, Tc5 transposase DNA-binding do...  76.9    2e-18


>CDD:460850 pfam03221, HTH_Tnp_Tc5, Tc5 transposase DNA-binding domain.  

Length=63

 Score = 76.9 bits (190),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 0/61 (0%)

Query  92   PDIEKALSNWVRNYQKQGYPLSDEMIREKALFFASTCGSPDGKEKVLTQSWLEKFKLKNN  151
            PD+EKAL  W+   + +G P++  MIREKAL  A         +   ++ WL++FK ++ 
Sbjct  2    PDLEKALYEWILQLRARGIPITGPMIREKALELAQLAADLGEPDFKASKGWLDRFKKRHG  61

Query  152  L  152
            +
Sbjct  62   I  62



Lambda      K        H        a         alpha
   0.310    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 550599736


Query= TCONS_00006905

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460850 pfam03221, HTH_Tnp_Tc5, Tc5 transposase DNA-binding do...  76.9    2e-18


>CDD:460850 pfam03221, HTH_Tnp_Tc5, Tc5 transposase DNA-binding domain.  

Length=63

 Score = 76.9 bits (190),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 0/61 (0%)

Query  92   PDIEKALSNWVRNYQKQGYPLSDEMIREKALFFASTCGSPDGKEKVLTQSWLEKFKLKNN  151
            PD+EKAL  W+   + +G P++  MIREKAL  A         +   ++ WL++FK ++ 
Sbjct  2    PDLEKALYEWILQLRARGIPITGPMIREKALELAQLAADLGEPDFKASKGWLDRFKKRHG  61

Query  152  L  152
            +
Sbjct  62   I  62



Lambda      K        H        a         alpha
   0.310    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 550599736


Query= TCONS_00006907

Length=334


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.122    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00006908

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460850 pfam03221, HTH_Tnp_Tc5, Tc5 transposase DNA-binding do...  76.9    2e-18


>CDD:460850 pfam03221, HTH_Tnp_Tc5, Tc5 transposase DNA-binding domain.  

Length=63

 Score = 76.9 bits (190),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 0/61 (0%)

Query  46   PDIEKALSNWVRNYQKQGYPLSDEMIREKALFFASTCGSPDGKEKVLTQSWLEKFKLKNN  105
            PD+EKAL  W+   + +G P++  MIREKAL  A         +   ++ WL++FK ++ 
Sbjct  2    PDLEKALYEWILQLRARGIPITGPMIREKALELAQLAADLGEPDFKASKGWLDRFKKRHG  61

Query  106  L  106
            +
Sbjct  62   I  62



Lambda      K        H        a         alpha
   0.308    0.123    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00000961

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00000962

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00000963

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00000967

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00006909

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00000964

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00000965

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00000966

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00006910

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00000968

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00000970

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00006911

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00006912

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00000969

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465301 pfam16897, MMR_HSR1_Xtn, C-terminal region of MMR_HSR1...  134     4e-43


>CDD:465301 pfam16897, MMR_HSR1_Xtn, C-terminal region of MMR_HSR1 domain. 
 MMR_HSR1_Xtn is the C-terminal region of some members of 
the MMR_HSR1 family.
Length=105

 Score = 134 bits (341),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 51/84 (61%), Positives = 63/84 (75%), Gaps = 1/84 (1%)

Query  1    MNEYKISSADISIRCDATIDDLIDVLEAKSRSYIPVIYALNKIDSISIEELDLLYRIPNA  60
            + EYKI +AD+ IR D T+DDLIDV+E  +R YIP +Y  NKID ISIEELD L R P++
Sbjct  23   LREYKIHNADVLIREDVTVDDLIDVIE-GNRVYIPCLYVYNKIDLISIEELDRLAREPDS  81

Query  61   VPISSEHGWNIDELLELMWEKLNL  84
            VPIS+E G N+DEL E +WE L L
Sbjct  82   VPISAEKGLNLDELKERIWEYLGL  105



Lambda      K        H        a         alpha
   0.318    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00000971

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I. Cystein...  124     4e-37


>CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I.  Cysteine dioxygenase 
type I (EC:1.13.11.20) converts cysteine to cysteinesulphinic 
acid and is the rate-limiting step in sulphate production.
Length=169

 Score = 124 bits (313),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 62/120 (52%), Gaps = 9/120 (8%)

Query  42   DDVNPLDIQRLMEQYVSNPEEWRPFALGDNSRGYTRNLIDQGNGKSNLLILVWSPGRGSA  101
               +  ++  LME Y S+P EW  +A  D   GYTRNL+D GNGKSNL+IL W PG GS+
Sbjct  25   AAADVQEVASLMEAYESDPTEWAMYAKFD-PEGYTRNLVDAGNGKSNLMILCWGPGTGSS  83

Query  102  IHDHANAHCVMKVLKGSLQETLYTWPDQDKLRNGQPSSPQIIK-KTTYTENQVTYMSDKV  160
             HDH ++HC  K L G L+ET   WP +                +     N   Y +D+ 
Sbjct  84   WHDHTDSHCFFKTLAGELKETALAWPLKT-------LELSDGVDRERRLSNGTGYANDRH  136



Lambda      K        H        a         alpha
   0.314    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00006913

Length=169
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I. Cystein...  123     4e-37


>CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I.  Cysteine dioxygenase 
type I (EC:1.13.11.20) converts cysteine to cysteinesulphinic 
acid and is the rate-limiting step in sulphate production.
Length=169

 Score = 123 bits (311),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 62/120 (52%), Gaps = 9/120 (8%)

Query  42   DDVNPLDIQRLMEQYVSNPEEWRPFALGDNSRGYTRNLIDQGNGKSNLLILVWSPGRGSA  101
               +  ++  LME Y S+P EW  +A  D   GYTRNL+D GNGKSNL+IL W PG GS+
Sbjct  25   AAADVQEVASLMEAYESDPTEWAMYAKFD-PEGYTRNLVDAGNGKSNLMILCWGPGTGSS  83

Query  102  IHDHANAHCVMKVLKGSLQETLYTWPDQDKLRNGQPSSPQIIK-KTTYTENQVTYMSDKV  160
             HDH ++HC  K L G L+ET   WP +                +     N   Y +D+ 
Sbjct  84   WHDHTDSHCFFKTLAGELKETALAWPLKT-------LELSDGVDRERRLSNGTGYANDRH  136



Lambda      K        H        a         alpha
   0.314    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00006915

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I. Cystein...  144     3e-44


>CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I.  Cysteine dioxygenase 
type I (EC:1.13.11.20) converts cysteine to cysteinesulphinic 
acid and is the rate-limiting step in sulphate production.
Length=169

 Score = 144 bits (363),  Expect = 3e-44, Method: Composition-based stats.
 Identities = 60/136 (44%), Positives = 80/136 (59%), Gaps = 2/136 (1%)

Query  42   DDVNPLDIQRLMEQYVSNPEEWRPFALGDNSRGYTRNLIDQGNGKSNLLILVWSPGRGSA  101
               +  ++  LME Y S+P EW  +A  D    YTRNL+D GNGKSNL+IL W PG GS+
Sbjct  25   AAADVQEVASLMEAYESDPTEWAMYAKFDPEG-YTRNLVDAGNGKSNLMILCWGPGTGSS  83

Query  102  IHDHANAHCVMKVLKGSLQETLYTWPDQD-KLRNGQPSSPQIIKKTTYTENQLGLHKISN  160
             HDH ++HC  K L G L+ET   WP +  +L +G     ++   T Y  ++ GLH++ N
Sbjct  84   WHDHTDSHCFFKTLAGELKETALAWPLKTLELSDGVDRERRLSNGTGYANDRHGLHRVEN  143

Query  161  PDPHNPAVSLHLYTPP  176
                  AVSLHLY PP
Sbjct  144  ESHDRHAVSLHLYYPP  159



Lambda      K        H        a         alpha
   0.314    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00006914

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I. Cystein...  141     3e-43


>CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I.  Cysteine dioxygenase 
type I (EC:1.13.11.20) converts cysteine to cysteinesulphinic 
acid and is the rate-limiting step in sulphate production.
Length=169

 Score = 141 bits (356),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 57/143 (40%), Positives = 73/143 (51%), Gaps = 14/143 (10%)

Query  42   DDVNPLDIQRLMEQYVSNPEEWRPFALGDNSRGYTRNLIDQGNGKSNLLILVWSPGRGSA  101
               +  ++  LME Y S+P EW  +A  D   GYTRNL+D GNGKSNL+IL W PG GS+
Sbjct  25   AAADVQEVASLMEAYESDPTEWAMYAKFD-PEGYTRNLVDAGNGKSNLMILCWGPGTGSS  83

Query  102  IHDHANAHCVMKVLKGSLQETLYTWPDQDKLRNGQPSSPQIIK-KTTYTENQVTYMSD--  158
             HDH ++HC  K L G L+ET   WP +                +     N   Y +D  
Sbjct  84   WHDHTDSHCFFKTLAGELKETALAWPLKT-------LELSDGVDRERRLSNGTGYANDRH  136

Query  159  ---KISNPDPHNPAVSLHLYTPP  178
               ++ N      AVSLHLY PP
Sbjct  137  GLHRVENESHDRHAVSLHLYYPP  159



Lambda      K        H        a         alpha
   0.313    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00000976

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I. Cystein...  155     8e-49


>CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I.  Cysteine dioxygenase 
type I (EC:1.13.11.20) converts cysteine to cysteinesulphinic 
acid and is the rate-limiting step in sulphate production.
Length=169

 Score = 155 bits (393),  Expect = 8e-49, Method: Composition-based stats.
 Identities = 60/143 (42%), Positives = 77/143 (54%), Gaps = 9/143 (6%)

Query  42   DDVNPLDIQRLMEQYVSNPEEWRPFALGDNSRGYTRNLIDQGNGKSNLLILVWSPGRGSA  101
               +  ++  LME Y S+P EW  +A  D   GYTRNL+D GNGKSNL+IL W PG GS+
Sbjct  25   AAADVQEVASLMEAYESDPTEWAMYAKFD-PEGYTRNLVDAGNGKSNLMILCWGPGTGSS  83

Query  102  IHDHANAHCVMKVLKGSLQETLYTWPDQDKLRNGQPSSPQIIK-KTTYTENQVTYMSDKL  160
             HDH ++HC  K L G L+ET   WP +                +     N   Y +D+ 
Sbjct  84   WHDHTDSHCFFKTLAGELKETALAWPLKT-------LELSDGVDRERRLSNGTGYANDRH  136

Query  161  GLHKISNPDPHNPAVSLHLYTPP  183
            GLH++ N      AVSLHLY PP
Sbjct  137  GLHRVENESHDRHAVSLHLYYPP  159



Lambda      K        H        a         alpha
   0.314    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00000975

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I. Cystein...  155     8e-49


>CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I.  Cysteine dioxygenase 
type I (EC:1.13.11.20) converts cysteine to cysteinesulphinic 
acid and is the rate-limiting step in sulphate production.
Length=169

 Score = 155 bits (393),  Expect = 8e-49, Method: Composition-based stats.
 Identities = 60/143 (42%), Positives = 77/143 (54%), Gaps = 9/143 (6%)

Query  42   DDVNPLDIQRLMEQYVSNPEEWRPFALGDNSRGYTRNLIDQGNGKSNLLILVWSPGRGSA  101
               +  ++  LME Y S+P EW  +A  D   GYTRNL+D GNGKSNL+IL W PG GS+
Sbjct  25   AAADVQEVASLMEAYESDPTEWAMYAKFD-PEGYTRNLVDAGNGKSNLMILCWGPGTGSS  83

Query  102  IHDHANAHCVMKVLKGSLQETLYTWPDQDKLRNGQPSSPQIIK-KTTYTENQVTYMSDKL  160
             HDH ++HC  K L G L+ET   WP +                +     N   Y +D+ 
Sbjct  84   WHDHTDSHCFFKTLAGELKETALAWPLKT-------LELSDGVDRERRLSNGTGYANDRH  136

Query  161  GLHKISNPDPHNPAVSLHLYTPP  183
            GLH++ N      AVSLHLY PP
Sbjct  137  GLHRVENESHDRHAVSLHLYYPP  159



Lambda      K        H        a         alpha
   0.314    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00000972

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I. Cystein...  155     8e-49


>CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I.  Cysteine dioxygenase 
type I (EC:1.13.11.20) converts cysteine to cysteinesulphinic 
acid and is the rate-limiting step in sulphate production.
Length=169

 Score = 155 bits (393),  Expect = 8e-49, Method: Composition-based stats.
 Identities = 60/143 (42%), Positives = 77/143 (54%), Gaps = 9/143 (6%)

Query  42   DDVNPLDIQRLMEQYVSNPEEWRPFALGDNSRGYTRNLIDQGNGKSNLLILVWSPGRGSA  101
               +  ++  LME Y S+P EW  +A  D   GYTRNL+D GNGKSNL+IL W PG GS+
Sbjct  25   AAADVQEVASLMEAYESDPTEWAMYAKFD-PEGYTRNLVDAGNGKSNLMILCWGPGTGSS  83

Query  102  IHDHANAHCVMKVLKGSLQETLYTWPDQDKLRNGQPSSPQIIK-KTTYTENQVTYMSDKL  160
             HDH ++HC  K L G L+ET   WP +                +     N   Y +D+ 
Sbjct  84   WHDHTDSHCFFKTLAGELKETALAWPLKT-------LELSDGVDRERRLSNGTGYANDRH  136

Query  161  GLHKISNPDPHNPAVSLHLYTPP  183
            GLH++ N      AVSLHLY PP
Sbjct  137  GLHRVENESHDRHAVSLHLYYPP  159



Lambda      K        H        a         alpha
   0.314    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00000973

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I. Cystein...  124     4e-37


>CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I.  Cysteine dioxygenase 
type I (EC:1.13.11.20) converts cysteine to cysteinesulphinic 
acid and is the rate-limiting step in sulphate production.
Length=169

 Score = 124 bits (313),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 62/120 (52%), Gaps = 9/120 (8%)

Query  42   DDVNPLDIQRLMEQYVSNPEEWRPFALGDNSRGYTRNLIDQGNGKSNLLILVWSPGRGSA  101
               +  ++  LME Y S+P EW  +A  D   GYTRNL+D GNGKSNL+IL W PG GS+
Sbjct  25   AAADVQEVASLMEAYESDPTEWAMYAKFD-PEGYTRNLVDAGNGKSNLMILCWGPGTGSS  83

Query  102  IHDHANAHCVMKVLKGSLQETLYTWPDQDKLRNGQPSSPQIIK-KTTYTENQVTYMSDKV  160
             HDH ++HC  K L G L+ET   WP +                +     N   Y +D+ 
Sbjct  84   WHDHTDSHCFFKTLAGELKETALAWPLKT-------LELSDGVDRERRLSNGTGYANDRH  136



Lambda      K        H        a         alpha
   0.314    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00006916

Length=187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I. Cystein...  123     9e-37


>CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I.  Cysteine dioxygenase 
type I (EC:1.13.11.20) converts cysteine to cysteinesulphinic 
acid and is the rate-limiting step in sulphate production.
Length=169

 Score = 123 bits (311),  Expect = 9e-37, Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 61/120 (51%), Gaps = 9/120 (8%)

Query  42   DDVNPLDIQRLMEQYVSNPEEWRPFALGDNSRGYTRNLIDQGNGKSNLLILVWSPGRGSA  101
               +  ++  LME Y S+P EW  +A  D    YTRNL+D GNGKSNL+IL W PG GS+
Sbjct  25   AAADVQEVASLMEAYESDPTEWAMYAKFDPEG-YTRNLVDAGNGKSNLMILCWGPGTGSS  83

Query  102  IHDHANAHCVMKVLKGSLQETLYTWPDQDKLRNGQPSSPQIIK-KTTYTENQVTYMSDKV  160
             HDH ++HC  K L G L+ET   WP +                +     N   Y +D+ 
Sbjct  84   WHDHTDSHCFFKTLAGELKETALAWPLKT-------LELSDGVDRERRLSNGTGYANDRH  136



Lambda      K        H        a         alpha
   0.313    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00000974

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I. Cystein...  124     4e-37


>CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I.  Cysteine dioxygenase 
type I (EC:1.13.11.20) converts cysteine to cysteinesulphinic 
acid and is the rate-limiting step in sulphate production.
Length=169

 Score = 124 bits (313),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 62/120 (52%), Gaps = 9/120 (8%)

Query  42   DDVNPLDIQRLMEQYVSNPEEWRPFALGDNSRGYTRNLIDQGNGKSNLLILVWSPGRGSA  101
               +  ++  LME Y S+P EW  +A  D   GYTRNL+D GNGKSNL+IL W PG GS+
Sbjct  25   AAADVQEVASLMEAYESDPTEWAMYAKFD-PEGYTRNLVDAGNGKSNLMILCWGPGTGSS  83

Query  102  IHDHANAHCVMKVLKGSLQETLYTWPDQDKLRNGQPSSPQIIK-KTTYTENQVTYMSDKV  160
             HDH ++HC  K L G L+ET   WP +                +     N   Y +D+ 
Sbjct  84   WHDHTDSHCFFKTLAGELKETALAWPLKT-------LELSDGVDRERRLSNGTGYANDRH  136



Lambda      K        H        a         alpha
   0.314    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00000977

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I. Cystein...  156     5e-49


>CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I.  Cysteine dioxygenase 
type I (EC:1.13.11.20) converts cysteine to cysteinesulphinic 
acid and is the rate-limiting step in sulphate production.
Length=169

 Score = 156 bits (395),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 60/143 (42%), Positives = 77/143 (54%), Gaps = 9/143 (6%)

Query  48   DDVNPLDIQRLMEQYVSNPEEWRPFALGDNSRGYTRNLIDQGNGKSNLLILVWSPGRGSA  107
               +  ++  LME Y S+P EW  +A  D   GYTRNL+D GNGKSNL+IL W PG GS+
Sbjct  25   AAADVQEVASLMEAYESDPTEWAMYAKFD-PEGYTRNLVDAGNGKSNLMILCWGPGTGSS  83

Query  108  IHDHANAHCVMKVLKGSLQETLYTWPDQDKLRNGQPSSPQIIK-KTTYTENQVTYMSDKL  166
             HDH ++HC  K L G L+ET   WP +                +     N   Y +D+ 
Sbjct  84   WHDHTDSHCFFKTLAGELKETALAWPLKT-------LELSDGVDRERRLSNGTGYANDRH  136

Query  167  GLHKISNPDPHNPAVSLHLYTPP  189
            GLH++ N      AVSLHLY PP
Sbjct  137  GLHRVENESHDRHAVSLHLYYPP  159



Lambda      K        H        a         alpha
   0.314    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00006917

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I. Cystein...  146     8e-46


>CDD:428713 pfam05995, CDO_I, Cysteine dioxygenase type I.  Cysteine dioxygenase 
type I (EC:1.13.11.20) converts cysteine to cysteinesulphinic 
acid and is the rate-limiting step in sulphate production.
Length=169

 Score = 146 bits (370),  Expect = 8e-46, Method: Composition-based stats.
 Identities = 59/144 (41%), Positives = 76/144 (53%), Gaps = 9/144 (6%)

Query  42   DDVNPLDIQRLMEQYVSNPEEWRPFALGDNSRGYTRNLIDQGNGKSNLLILVWSPGRGSA  101
               +  ++  LME Y S+P EW  +A  D   GYTRNL+D GNGKSNL+IL W PG GS+
Sbjct  25   AAADVQEVASLMEAYESDPTEWAMYAKFD-PEGYTRNLVDAGNGKSNLMILCWGPGTGSS  83

Query  102  IHDHANAHCVMKVLKGSLQETLYTWPDQDKLRNGQPSSPQIIK-KTTYTENQVTYMSDKL  160
             HDH ++HC  K L G L+ET   WP +                +     N   Y +D+ 
Sbjct  84   WHDHTDSHCFFKTLAGELKETALAWPLKT-------LELSDGVDRERRLSNGTGYANDRH  136

Query  161  GLHKISNPDPHNPAVSLHRTYLPL  184
            GLH++ N      AVSLH  Y PL
Sbjct  137  GLHRVENESHDRHAVSLHLYYPPL  160



Lambda      K        H        a         alpha
   0.312    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00000978

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00006918

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00000979

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00000980

Length=217
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  68.3    1e-14


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 68.3 bits (167),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 47/113 (42%), Gaps = 10/113 (9%)

Query  92   PLAIFIHGFPDSWAVWRYIVSSSSLQSAATLVVVDLPGYGGSDSLDKYSATNVLESLTEF  151
            P  + +HG P S  +WR +  + + +    ++ +DL G+G S    K       + L E 
Sbjct  1    PPVLLLHGLPGSSDLWRKLAPALA-RDGFRVIALDLRGFGKSSRP-KAQDDYRTDDLAED  58

Query  152  IIAIRTKYGIDTETGNNQRRTIIVGHDWGCVISTRLAAEAPQLADRFVVTNGP  204
            +  I    G++        +  +VGH  G +I+   AA+ P      V+    
Sbjct  59   LEYILEALGLE--------KVNLVGHSMGGLIALAYAAKYPDRVKALVLLGAL  103



Lambda      K        H        a         alpha
   0.324    0.138    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00006920

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.145    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0751    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00006919

Length=253


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00000981

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00000982

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00006921

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00000984

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00000985

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00006922

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA syntheta...  190     3e-57
CDD:408077 pfam18262, PhetRS_B1, Phe-tRNA synthetase beta subunit...  142     4e-41
CDD:460942 pfam03484, B5, tRNA synthetase B5 domain. This domain ...  86.7    1e-21
CDD:427327 pfam03483, B3_4, B3/4 domain. This domain is found in ...  76.0    1e-16


>CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA synthetase beta 
chain CLM domain.  This domain corresponds to the catalytic 
like domain (CLM) in the beta chain of phe tRNA synthetase.
Length=214

 Score = 190 bits (484),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 72/236 (31%), Positives = 99/236 (42%), Gaps = 34/236 (14%)

Query  391  LPRSFPSKSGTIAQPLPINKLSDIVRMEAAMAGWTEVLPLILCSHDENFAWLNRKDDGTT  450
            +P + P    T     P  KL   VR   A AG+TEV+     S  +        D    
Sbjct  1    IPSTLPKGPTTGGGLTPEQKLRRRVRDLLAAAGFTEVITYSFTSPKDLDKL-LEDDPRRK  59

Query  451  AVKLANPKTVEFQVVRTSLLPGLLKTIRENKHHAVP-IKIFECSDVAFKDLTLERKSRNE  509
            AVKLANP + E  V+RTSLLPGLL+T+  N +   P +++FE   V   D  LE   R  
Sbjct  60   AVKLANPLSEELSVMRTSLLPGLLETLAYNLNRGNPDVRLFEIGRVFLPD-ELEELPREP  118

Query  510  RHFAAAWYG-----------RTSGFEVVHGLLDRIMAMLKSAFITGEECLENPAVNDSHY  558
            R  A    G           R   F  + G+++ ++A L                    Y
Sbjct  119  RRLAGLLTGKRLPESWQGKARPVDFYDLKGIVEALLAAL----------------GIDDY  162

Query  559  WIEELDEPTYFPGHAASIHLRIAGKDHVIGAFGILHPTVLEKYELKYPVSTLEINI  614
              E  D P   PG +A I +       VIG  G LHP V + ++L  PV   E+++
Sbjct  163  EFEAADHPALHPGRSAEILV----GGKVIGFIGELHPEVAKNFDLPQPVYVFELDL  214


>CDD:408077 pfam18262, PhetRS_B1, Phe-tRNA synthetase beta subunit B1 domain. 
 This is the N-terminal domain found in human cytosolic 
phenylalanyl tRNA synthetase beta subunit.
Length=83

 Score = 142 bits (359),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 48/83 (58%), Positives = 57/83 (69%), Gaps = 0/83 (0%)

Query  1   MPTISVDKAALFKELGREYTTEEFDELCFEFGIELDEDTTNSDRPIVDGKQEPPQLKIEI  60
           MPTISV K  LFK LGR YT EEF +LCFEFG+ELDE T+  ++     + E    KI+I
Sbjct  1   MPTISVKKVRLFKVLGRVYTEEEFSDLCFEFGLELDEITSEENQLKTSWRSEEVVYKIDI  60

Query  61  PANRYDLLCFEGIQLMLNIFLGR  83
           PANRYDLLC EG+   L IF G+
Sbjct  61  PANRYDLLCVEGLATALLIFKGK  83


>CDD:460942 pfam03484, B5, tRNA synthetase B5 domain.  This domain is found 
in phenylalanine-tRNA synthetase beta subunits.
Length=67

 Score = 86.7 bits (216),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query  323  EVSYINQCCGLELSPEEICKLLTKMAYQARPSASSPDLIDVDVPPTRADVLHQADIMEDV  382
             +  IN+  G++LS EEI ++L ++ ++        D + V VP  R D+LH+AD++E+V
Sbjct  4    RLDRINRLLGIDLSAEEIVEILERLGFEV--EEEDGDTLTVTVPSYRPDILHEADLIEEV  61

Query  383  AIAYGF  388
            A  YG+
Sbjct  62   ARIYGY  67


>CDD:427327 pfam03483, B3_4, B3/4 domain.  This domain is found in tRNA synthetase 
beta subunits as well as in some non tRNA synthetase 
proteins.
Length=174

 Score = 76.0 bits (188),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 54/174 (31%), Gaps = 59/174 (34%)

Query  111  VRPLVSGAILRNIKFDKARYESFIALQDKLH-------------QNLARQRTLVSIGTHD  157
              P   G ++R +K ++    S   LQ +L               N         +   D
Sbjct  1    ACPRYFGRVIRGVKKNR---PSPEWLQRRLRRAGIRPINNVVDITNYVMLELGQPLHAFD  57

Query  158  LDTIQGPFTYEALPPKDIKFVPLNQTKELNGEELMSFYEVWTDHLWLIAINTYIYKQKDK  217
            LD I G              V L +     GE+  +                     K++
Sbjct  58   LDKIAGDIV-----------VRLAKG----GEKFTTLDG------------------KER  84

Query  218  HLGKYLHIIRDSPVYPVIYDSKRTVCSLPPIINGDHSKITLDTKNVLIEITALD  271
             L          P   VI D    V +L  I+ G+ S++T DT N+ +E    D
Sbjct  85   EL---------DPGDLVIADDDGPV-ALAGIMGGEESEVTEDTTNIFLESAGFD  128



Lambda      K        H        a         alpha
   0.319    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 786069128


Query= TCONS_00006924

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA syntheta...  190     6e-58
CDD:460942 pfam03484, B5, tRNA synthetase B5 domain. This domain ...  87.4    6e-22
CDD:427327 pfam03483, B3_4, B3/4 domain. This domain is found in ...  87.2    1e-20


>CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA synthetase beta 
chain CLM domain.  This domain corresponds to the catalytic 
like domain (CLM) in the beta chain of phe tRNA synthetase.
Length=214

 Score = 190 bits (484),  Expect = 6e-58, Method: Composition-based stats.
 Identities = 72/236 (31%), Positives = 99/236 (42%), Gaps = 34/236 (14%)

Query  298  LPRSFPSKSGTIAQPLPINKLSDIVRMEAAMAGWTEVLPLILCSHDENFAWLNRKDDGTT  357
            +P + P    T     P  KL   VR   A AG+TEV+     S  +        D    
Sbjct  1    IPSTLPKGPTTGGGLTPEQKLRRRVRDLLAAAGFTEVITYSFTSPKDLDKL-LEDDPRRK  59

Query  358  AVKLANPKTVEFQVVRTSLLPGLLKTIRENKHHAVP-IKIFECSDVAFKDLTLERKSRNE  416
            AVKLANP + E  V+RTSLLPGLL+T+  N +   P +++FE   V   D  LE   R  
Sbjct  60   AVKLANPLSEELSVMRTSLLPGLLETLAYNLNRGNPDVRLFEIGRVFLPD-ELEELPREP  118

Query  417  RHFAAAWYG-----------RTSGFEVVHGLLDRIMAMLKSAFITGEECLENPAVNDSHY  465
            R  A    G           R   F  + G+++ ++A L                    Y
Sbjct  119  RRLAGLLTGKRLPESWQGKARPVDFYDLKGIVEALLAAL----------------GIDDY  162

Query  466  WIEELDEPTYFPGHAASIHLRIAGKDHVIGAFGILHPTVLEKYELKYPVSTLEINI  521
              E  D P   PG +A I +       VIG  G LHP V + ++L  PV   E+++
Sbjct  163  EFEAADHPALHPGRSAEILV----GGKVIGFIGELHPEVAKNFDLPQPVYVFELDL  214


>CDD:460942 pfam03484, B5, tRNA synthetase B5 domain.  This domain is found 
in phenylalanine-tRNA synthetase beta subunits.
Length=67

 Score = 87.4 bits (218),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query  230  EVSYINQCCGLELSPEEICKLLTKMAYQARPSASSPDLIDVDVPPTRADVLHQADIMEDV  289
             +  IN+  G++LS EEI ++L ++ ++        D + V VP  R D+LH+AD++E+V
Sbjct  4    RLDRINRLLGIDLSAEEIVEILERLGFEV--EEEDGDTLTVTVPSYRPDILHEADLIEEV  61

Query  290  AIAYGF  295
            A  YG+
Sbjct  62   ARIYGY  67


>CDD:427327 pfam03483, B3_4, B3/4 domain.  This domain is found in tRNA synthetase 
beta subunits as well as in some non tRNA synthetase 
proteins.
Length=174

 Score = 87.2 bits (217),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 54/156 (35%), Gaps = 41/156 (26%)

Query  36   VRPLVSGAILRNIKFDKARYESFIALQDKLH-------------QNLARQRTLVSIGTHD  82
              P   G ++R +K ++    S   LQ +L               N         +   D
Sbjct  1    ACPRYFGRVIRGVKKNR---PSPEWLQRRLRRAGIRPINNVVDITNYVMLELGQPLHAFD  57

Query  83   LDTIQGPFTYEALPPKDIKFVPLNQTKELNGEELMSFYEKDKHLGKYLHIIRDSPVYPVI  142
            LD I G              V L +     GE+  +   K++ L          P   VI
Sbjct  58   LDKIAGDIV-----------VRLAKG----GEKFTTLDGKEREL---------DPGDLVI  93

Query  143  YDSKRTVCSLPPIINGDHSKITLDTKNVLIEITALD  178
             D    V +L  I+ G+ S++T DT N+ +E    D
Sbjct  94   ADDDGPV-ALAGIMGGEESEVTEDTTNIFLESAGFD  128



Lambda      K        H        a         alpha
   0.319    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00000986

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA syntheta...  189     3e-57
CDD:408077 pfam18262, PhetRS_B1, Phe-tRNA synthetase beta subunit...  141     5e-41
CDD:460942 pfam03484, B5, tRNA synthetase B5 domain. This domain ...  86.7    1e-21
CDD:427327 pfam03483, B3_4, B3/4 domain. This domain is found in ...  87.2    1e-20


>CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA synthetase beta 
chain CLM domain.  This domain corresponds to the catalytic 
like domain (CLM) in the beta chain of phe tRNA synthetase.
Length=214

 Score = 189 bits (483),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 72/236 (31%), Positives = 99/236 (42%), Gaps = 34/236 (14%)

Query  373  LPRSFPSKSGTIAQPLPINKLSDIVRMEAAMAGWTEVLPLILCSHDENFAWLNRKDDGTT  432
            +P + P    T     P  KL   VR   A AG+TEV+     S  +        D    
Sbjct  1    IPSTLPKGPTTGGGLTPEQKLRRRVRDLLAAAGFTEVITYSFTSPKDLDKL-LEDDPRRK  59

Query  433  AVKLANPKTVEFQVVRTSLLPGLLKTIRENKHHAVP-IKIFECSDVAFKDLTLERKSRNE  491
            AVKLANP + E  V+RTSLLPGLL+T+  N +   P +++FE   V   D  LE   R  
Sbjct  60   AVKLANPLSEELSVMRTSLLPGLLETLAYNLNRGNPDVRLFEIGRVFLPD-ELEELPREP  118

Query  492  RHFAAAWYG-----------RTSGFEVVHGLLDRIMAMLKSAFITGEECLENPAVNDSHY  540
            R  A    G           R   F  + G+++ ++A L                    Y
Sbjct  119  RRLAGLLTGKRLPESWQGKARPVDFYDLKGIVEALLAAL----------------GIDDY  162

Query  541  WIEELDEPTYFPGHAASIHLRIAGKDHVIGAFGILHPTVLEKYELKYPVSTLEINI  596
              E  D P   PG +A I +       VIG  G LHP V + ++L  PV   E+++
Sbjct  163  EFEAADHPALHPGRSAEILV----GGKVIGFIGELHPEVAKNFDLPQPVYVFELDL  214


>CDD:408077 pfam18262, PhetRS_B1, Phe-tRNA synthetase beta subunit B1 domain. 
 This is the N-terminal domain found in human cytosolic 
phenylalanyl tRNA synthetase beta subunit.
Length=83

 Score = 141 bits (357),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 48/83 (58%), Positives = 57/83 (69%), Gaps = 0/83 (0%)

Query  1   MPTISVDKAALFKELGREYTTEEFDELCFEFGIELDEDTTNSDRPIVDGKQEPPQLKIEI  60
           MPTISV K  LFK LGR YT EEF +LCFEFG+ELDE T+  ++     + E    KI+I
Sbjct  1   MPTISVKKVRLFKVLGRVYTEEEFSDLCFEFGLELDEITSEENQLKTSWRSEEVVYKIDI  60

Query  61  PANRYDLLCFEGIQLMLNIFLGR  83
           PANRYDLLC EG+   L IF G+
Sbjct  61  PANRYDLLCVEGLATALLIFKGK  83


>CDD:460942 pfam03484, B5, tRNA synthetase B5 domain.  This domain is found 
in phenylalanine-tRNA synthetase beta subunits.
Length=67

 Score = 86.7 bits (216),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query  305  EVSYINQCCGLELSPEEICKLLTKMAYQARPSASSPDLIDVDVPPTRADVLHQADIMEDV  364
             +  IN+  G++LS EEI ++L ++ ++        D + V VP  R D+LH+AD++E+V
Sbjct  4    RLDRINRLLGIDLSAEEIVEILERLGFEV--EEEDGDTLTVTVPSYRPDILHEADLIEEV  61

Query  365  AIAYGF  370
            A  YG+
Sbjct  62   ARIYGY  67


>CDD:427327 pfam03483, B3_4, B3/4 domain.  This domain is found in tRNA synthetase 
beta subunits as well as in some non tRNA synthetase 
proteins.
Length=174

 Score = 87.2 bits (217),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 54/156 (35%), Gaps = 41/156 (26%)

Query  111  VRPLVSGAILRNIKFDKARYESFIALQDKLH-------------QNLARQRTLVSIGTHD  157
              P   G ++R +K ++    S   LQ +L               N         +   D
Sbjct  1    ACPRYFGRVIRGVKKNR---PSPEWLQRRLRRAGIRPINNVVDITNYVMLELGQPLHAFD  57

Query  158  LDTIQGPFTYEALPPKDIKFVPLNQTKELNGEELMSFYEKDKHLGKYLHIIRDSPVYPVI  217
            LD I G              V L +     GE+  +   K++ L          P   VI
Sbjct  58   LDKIAGDIV-----------VRLAKG----GEKFTTLDGKEREL---------DPGDLVI  93

Query  218  YDSKRTVCSLPPIINGDHSKITLDTKNVLIEITALD  253
             D    V +L  I+ G+ S++T DT N+ +E    D
Sbjct  94   ADDDGPV-ALAGIMGGEESEVTEDTTNIFLESAGFD  128



Lambda      K        H        a         alpha
   0.319    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 759169424


Query= TCONS_00006925

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA syntheta...  190     2e-57
CDD:408077 pfam18262, PhetRS_B1, Phe-tRNA synthetase beta subunit...  142     4e-41
CDD:460942 pfam03484, B5, tRNA synthetase B5 domain. This domain ...  87.1    9e-22
CDD:427327 pfam03483, B3_4, B3/4 domain. This domain is found in ...  87.6    1e-20


>CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA synthetase beta 
chain CLM domain.  This domain corresponds to the catalytic 
like domain (CLM) in the beta chain of phe tRNA synthetase.
Length=214

 Score = 190 bits (485),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 72/236 (31%), Positives = 99/236 (42%), Gaps = 34/236 (14%)

Query  391  LPRSFPSKSGTIAQPLPINKLSDIVRMEAAMAGWTEVLPLILCSHDENFAWLNRKDDGTT  450
            +P + P    T     P  KL   VR   A AG+TEV+     S  +        D    
Sbjct  1    IPSTLPKGPTTGGGLTPEQKLRRRVRDLLAAAGFTEVITYSFTSPKDLDKL-LEDDPRRK  59

Query  451  AVKLANPKTVEFQVVRTSLLPGLLKTIRENKHHAVP-IKIFECSDVAFKDLTLERKSRNE  509
            AVKLANP + E  V+RTSLLPGLL+T+  N +   P +++FE   V   D  LE   R  
Sbjct  60   AVKLANPLSEELSVMRTSLLPGLLETLAYNLNRGNPDVRLFEIGRVFLPD-ELEELPREP  118

Query  510  RHFAAAWYG-----------RTSGFEVVHGLLDRIMAMLKSAFITGEECLENPAVNDSHY  558
            R  A    G           R   F  + G+++ ++A L                    Y
Sbjct  119  RRLAGLLTGKRLPESWQGKARPVDFYDLKGIVEALLAAL----------------GIDDY  162

Query  559  WIEELDEPTYFPGHAASIHLRIAGKDHVIGAFGILHPTVLEKYELKYPVSTLEINI  614
              E  D P   PG +A I +       VIG  G LHP V + ++L  PV   E+++
Sbjct  163  EFEAADHPALHPGRSAEILV----GGKVIGFIGELHPEVAKNFDLPQPVYVFELDL  214


>CDD:408077 pfam18262, PhetRS_B1, Phe-tRNA synthetase beta subunit B1 domain. 
 This is the N-terminal domain found in human cytosolic 
phenylalanyl tRNA synthetase beta subunit.
Length=83

 Score = 142 bits (359),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 48/83 (58%), Positives = 57/83 (69%), Gaps = 0/83 (0%)

Query  1   MPTISVDKAALFKELGREYTTEEFDELCFEFGIELDEDTTNSDRPIVDGKQEPPQLKIEI  60
           MPTISV K  LFK LGR YT EEF +LCFEFG+ELDE T+  ++     + E    KI+I
Sbjct  1   MPTISVKKVRLFKVLGRVYTEEEFSDLCFEFGLELDEITSEENQLKTSWRSEEVVYKIDI  60

Query  61  PANRYDLLCFEGIQLMLNIFLGR  83
           PANRYDLLC EG+   L IF G+
Sbjct  61  PANRYDLLCVEGLATALLIFKGK  83


>CDD:460942 pfam03484, B5, tRNA synthetase B5 domain.  This domain is found 
in phenylalanine-tRNA synthetase beta subunits.
Length=67

 Score = 87.1 bits (217),  Expect = 9e-22, Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query  323  EVSYINQCCGLELSPEEICKLLTKMAYQARPSASSPDLIDVDVPPTRADVLHQADIMEDV  382
             +  IN+  G++LS EEI ++L ++ ++        D + V VP  R D+LH+AD++E+V
Sbjct  4    RLDRINRLLGIDLSAEEIVEILERLGFEV--EEEDGDTLTVTVPSYRPDILHEADLIEEV  61

Query  383  AIAYGF  388
            A  YG+
Sbjct  62   ARIYGY  67


>CDD:427327 pfam03483, B3_4, B3/4 domain.  This domain is found in tRNA synthetase 
beta subunits as well as in some non tRNA synthetase 
proteins.
Length=174

 Score = 87.6 bits (218),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 54/156 (35%), Gaps = 41/156 (26%)

Query  111  VRPLVSGAILRNIKFDKARYESFIALQDKLH-------------QNLARQRTLVSIGTHD  157
              P   G ++R +K ++    S   LQ +L               N         +   D
Sbjct  1    ACPRYFGRVIRGVKKNR---PSPEWLQRRLRRAGIRPINNVVDITNYVMLELGQPLHAFD  57

Query  158  LDTIQGPFTYEALPPKDIKFVPLNQTKELNGEELMSFYEKDKHLGKYLHIIRDSPVYPVI  217
            LD I G              V L +     GE+  +   K++ L          P   VI
Sbjct  58   LDKIAGDIV-----------VRLAKG----GEKFTTLDGKEREL---------DPGDLVI  93

Query  218  YDSKRTVCSLPPIINGDHSKITLDTKNVLIEITALD  253
             D    V +L  I+ G+ S++T DT N+ +E    D
Sbjct  94   ADDDGPV-ALAGIMGGEESEVTEDTTNIFLESAGFD  128



Lambda      K        H        a         alpha
   0.319    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 786069128


Query= TCONS_00000987

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA syntheta...  190     2e-58
CDD:460942 pfam03484, B5, tRNA synthetase B5 domain. This domain ...  87.4    5e-22
CDD:427327 pfam03483, B3_4, B3/4 domain. This domain is found in ...  87.6    1e-20


>CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA synthetase beta 
chain CLM domain.  This domain corresponds to the catalytic 
like domain (CLM) in the beta chain of phe tRNA synthetase.
Length=214

 Score = 190 bits (485),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 72/236 (31%), Positives = 99/236 (42%), Gaps = 34/236 (14%)

Query  265  LPRSFPSKSGTIAQPLPINKLSDIVRMEAAMAGWTEVLPLILCSHDENFAWLNRKDDGTT  324
            +P + P    T     P  KL   VR   A AG+TEV+     S  +        D    
Sbjct  1    IPSTLPKGPTTGGGLTPEQKLRRRVRDLLAAAGFTEVITYSFTSPKDLDKL-LEDDPRRK  59

Query  325  AVKLANPKTVEFQVVRTSLLPGLLKTIRENKHHAVP-IKIFECSDVAFKDLTLERKSRNE  383
            AVKLANP + E  V+RTSLLPGLL+T+  N +   P +++FE   V   D  LE   R  
Sbjct  60   AVKLANPLSEELSVMRTSLLPGLLETLAYNLNRGNPDVRLFEIGRVFLPD-ELEELPREP  118

Query  384  RHFAAAWYG-----------RTSGFEVVHGLLDRIMAMLKSAFITGEECLENPAVNDSHY  432
            R  A    G           R   F  + G+++ ++A L                    Y
Sbjct  119  RRLAGLLTGKRLPESWQGKARPVDFYDLKGIVEALLAAL----------------GIDDY  162

Query  433  WIEELDEPTYFPGHAASIHLRIAGKDHVIGAFGILHPTVLEKYELKYPVSTLEINI  488
              E  D P   PG +A I +       VIG  G LHP V + ++L  PV   E+++
Sbjct  163  EFEAADHPALHPGRSAEILV----GGKVIGFIGELHPEVAKNFDLPQPVYVFELDL  214


>CDD:460942 pfam03484, B5, tRNA synthetase B5 domain.  This domain is found 
in phenylalanine-tRNA synthetase beta subunits.
Length=67

 Score = 87.4 bits (218),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query  197  EVSYINQCCGLELSPEEICKLLTKMAYQARPSASSPDLIDVDVPPTRADVLHQADIMEDV  256
             +  IN+  G++LS EEI ++L ++ ++        D + V VP  R D+LH+AD++E+V
Sbjct  4    RLDRINRLLGIDLSAEEIVEILERLGFEV--EEEDGDTLTVTVPSYRPDILHEADLIEEV  61

Query  257  AIAYGF  262
            A  YG+
Sbjct  62   ARIYGY  67


>CDD:427327 pfam03483, B3_4, B3/4 domain.  This domain is found in tRNA synthetase 
beta subunits as well as in some non tRNA synthetase 
proteins.
Length=174

 Score = 87.6 bits (218),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 54/156 (35%), Gaps = 41/156 (26%)

Query  3    VRPLVSGAILRNIKFDKARYESFIALQDKLH-------------QNLARQRTLVSIGTHD  49
              P   G ++R +K ++    S   LQ +L               N         +   D
Sbjct  1    ACPRYFGRVIRGVKKNR---PSPEWLQRRLRRAGIRPINNVVDITNYVMLELGQPLHAFD  57

Query  50   LDTIQGPFTYEALPPKDIKFVPLNQTKELNGEELMSFYEKDKHLGKYLHIIRDSPVYPVI  109
            LD I G              V L +     GE+  +   K++ L          P   VI
Sbjct  58   LDKIAGDIV-----------VRLAKG----GEKFTTLDGKEREL---------DPGDLVI  93

Query  110  YDSKRTVCSLPPIINGDHSKITLDTKNVLIEITALD  145
             D    V +L  I+ G+ S++T DT N+ +E    D
Sbjct  94   ADDDGPV-ALAGIMGGEESEVTEDTTNIFLESAGFD  128



Lambda      K        H        a         alpha
   0.319    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00006926

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA syntheta...  190     2e-58
CDD:460942 pfam03484, B5, tRNA synthetase B5 domain. This domain ...  87.4    5e-22
CDD:427327 pfam03483, B3_4, B3/4 domain. This domain is found in ...  87.6    1e-20


>CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA synthetase beta 
chain CLM domain.  This domain corresponds to the catalytic 
like domain (CLM) in the beta chain of phe tRNA synthetase.
Length=214

 Score = 190 bits (485),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 72/236 (31%), Positives = 99/236 (42%), Gaps = 34/236 (14%)

Query  265  LPRSFPSKSGTIAQPLPINKLSDIVRMEAAMAGWTEVLPLILCSHDENFAWLNRKDDGTT  324
            +P + P    T     P  KL   VR   A AG+TEV+     S  +        D    
Sbjct  1    IPSTLPKGPTTGGGLTPEQKLRRRVRDLLAAAGFTEVITYSFTSPKDLDKL-LEDDPRRK  59

Query  325  AVKLANPKTVEFQVVRTSLLPGLLKTIRENKHHAVP-IKIFECSDVAFKDLTLERKSRNE  383
            AVKLANP + E  V+RTSLLPGLL+T+  N +   P +++FE   V   D  LE   R  
Sbjct  60   AVKLANPLSEELSVMRTSLLPGLLETLAYNLNRGNPDVRLFEIGRVFLPD-ELEELPREP  118

Query  384  RHFAAAWYG-----------RTSGFEVVHGLLDRIMAMLKSAFITGEECLENPAVNDSHY  432
            R  A    G           R   F  + G+++ ++A L                    Y
Sbjct  119  RRLAGLLTGKRLPESWQGKARPVDFYDLKGIVEALLAAL----------------GIDDY  162

Query  433  WIEELDEPTYFPGHAASIHLRIAGKDHVIGAFGILHPTVLEKYELKYPVSTLEINI  488
              E  D P   PG +A I +       VIG  G LHP V + ++L  PV   E+++
Sbjct  163  EFEAADHPALHPGRSAEILV----GGKVIGFIGELHPEVAKNFDLPQPVYVFELDL  214


>CDD:460942 pfam03484, B5, tRNA synthetase B5 domain.  This domain is found 
in phenylalanine-tRNA synthetase beta subunits.
Length=67

 Score = 87.4 bits (218),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query  197  EVSYINQCCGLELSPEEICKLLTKMAYQARPSASSPDLIDVDVPPTRADVLHQADIMEDV  256
             +  IN+  G++LS EEI ++L ++ ++        D + V VP  R D+LH+AD++E+V
Sbjct  4    RLDRINRLLGIDLSAEEIVEILERLGFEV--EEEDGDTLTVTVPSYRPDILHEADLIEEV  61

Query  257  AIAYGF  262
            A  YG+
Sbjct  62   ARIYGY  67


>CDD:427327 pfam03483, B3_4, B3/4 domain.  This domain is found in tRNA synthetase 
beta subunits as well as in some non tRNA synthetase 
proteins.
Length=174

 Score = 87.6 bits (218),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 54/156 (35%), Gaps = 41/156 (26%)

Query  3    VRPLVSGAILRNIKFDKARYESFIALQDKLH-------------QNLARQRTLVSIGTHD  49
              P   G ++R +K ++    S   LQ +L               N         +   D
Sbjct  1    ACPRYFGRVIRGVKKNR---PSPEWLQRRLRRAGIRPINNVVDITNYVMLELGQPLHAFD  57

Query  50   LDTIQGPFTYEALPPKDIKFVPLNQTKELNGEELMSFYEKDKHLGKYLHIIRDSPVYPVI  109
            LD I G              V L +     GE+  +   K++ L          P   VI
Sbjct  58   LDKIAGDIV-----------VRLAKG----GEKFTTLDGKEREL---------DPGDLVI  93

Query  110  YDSKRTVCSLPPIINGDHSKITLDTKNVLIEITALD  145
             D    V +L  I+ G+ S++T DT N+ +E    D
Sbjct  94   ADDDGPV-ALAGIMGGEESEVTEDTTNIFLESAGFD  128



Lambda      K        H        a         alpha
   0.319    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00000988

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA syntheta...  190     2e-58
CDD:460942 pfam03484, B5, tRNA synthetase B5 domain. This domain ...  87.4    5e-22
CDD:427327 pfam03483, B3_4, B3/4 domain. This domain is found in ...  87.6    1e-20


>CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA synthetase beta 
chain CLM domain.  This domain corresponds to the catalytic 
like domain (CLM) in the beta chain of phe tRNA synthetase.
Length=214

 Score = 190 bits (485),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 72/236 (31%), Positives = 99/236 (42%), Gaps = 34/236 (14%)

Query  265  LPRSFPSKSGTIAQPLPINKLSDIVRMEAAMAGWTEVLPLILCSHDENFAWLNRKDDGTT  324
            +P + P    T     P  KL   VR   A AG+TEV+     S  +        D    
Sbjct  1    IPSTLPKGPTTGGGLTPEQKLRRRVRDLLAAAGFTEVITYSFTSPKDLDKL-LEDDPRRK  59

Query  325  AVKLANPKTVEFQVVRTSLLPGLLKTIRENKHHAVP-IKIFECSDVAFKDLTLERKSRNE  383
            AVKLANP + E  V+RTSLLPGLL+T+  N +   P +++FE   V   D  LE   R  
Sbjct  60   AVKLANPLSEELSVMRTSLLPGLLETLAYNLNRGNPDVRLFEIGRVFLPD-ELEELPREP  118

Query  384  RHFAAAWYG-----------RTSGFEVVHGLLDRIMAMLKSAFITGEECLENPAVNDSHY  432
            R  A    G           R   F  + G+++ ++A L                    Y
Sbjct  119  RRLAGLLTGKRLPESWQGKARPVDFYDLKGIVEALLAAL----------------GIDDY  162

Query  433  WIEELDEPTYFPGHAASIHLRIAGKDHVIGAFGILHPTVLEKYELKYPVSTLEINI  488
              E  D P   PG +A I +       VIG  G LHP V + ++L  PV   E+++
Sbjct  163  EFEAADHPALHPGRSAEILV----GGKVIGFIGELHPEVAKNFDLPQPVYVFELDL  214


>CDD:460942 pfam03484, B5, tRNA synthetase B5 domain.  This domain is found 
in phenylalanine-tRNA synthetase beta subunits.
Length=67

 Score = 87.4 bits (218),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query  197  EVSYINQCCGLELSPEEICKLLTKMAYQARPSASSPDLIDVDVPPTRADVLHQADIMEDV  256
             +  IN+  G++LS EEI ++L ++ ++        D + V VP  R D+LH+AD++E+V
Sbjct  4    RLDRINRLLGIDLSAEEIVEILERLGFEV--EEEDGDTLTVTVPSYRPDILHEADLIEEV  61

Query  257  AIAYGF  262
            A  YG+
Sbjct  62   ARIYGY  67


>CDD:427327 pfam03483, B3_4, B3/4 domain.  This domain is found in tRNA synthetase 
beta subunits as well as in some non tRNA synthetase 
proteins.
Length=174

 Score = 87.6 bits (218),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 54/156 (35%), Gaps = 41/156 (26%)

Query  3    VRPLVSGAILRNIKFDKARYESFIALQDKLH-------------QNLARQRTLVSIGTHD  49
              P   G ++R +K ++    S   LQ +L               N         +   D
Sbjct  1    ACPRYFGRVIRGVKKNR---PSPEWLQRRLRRAGIRPINNVVDITNYVMLELGQPLHAFD  57

Query  50   LDTIQGPFTYEALPPKDIKFVPLNQTKELNGEELMSFYEKDKHLGKYLHIIRDSPVYPVI  109
            LD I G              V L +     GE+  +   K++ L          P   VI
Sbjct  58   LDKIAGDIV-----------VRLAKG----GEKFTTLDGKEREL---------DPGDLVI  93

Query  110  YDSKRTVCSLPPIINGDHSKITLDTKNVLIEITALD  145
             D    V +L  I+ G+ S++T DT N+ +E    D
Sbjct  94   ADDDGPV-ALAGIMGGEESEVTEDTTNIFLESAGFD  128



Lambda      K        H        a         alpha
   0.319    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00000989

Length=636
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA syntheta...  190     2e-57
CDD:408077 pfam18262, PhetRS_B1, Phe-tRNA synthetase beta subunit...  142     3e-41
CDD:460942 pfam03484, B5, tRNA synthetase B5 domain. This domain ...  87.1    1e-21
CDD:427327 pfam03483, B3_4, B3/4 domain. This domain is found in ...  76.4    9e-17


>CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA synthetase beta 
chain CLM domain.  This domain corresponds to the catalytic 
like domain (CLM) in the beta chain of phe tRNA synthetase.
Length=214

 Score = 190 bits (486),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 72/236 (31%), Positives = 99/236 (42%), Gaps = 34/236 (14%)

Query  409  LPRSFPSKSGTIAQPLPINKLSDIVRMEAAMAGWTEVLPLILCSHDENFAWLNRKDDGTT  468
            +P + P    T     P  KL   VR   A AG+TEV+     S  +        D    
Sbjct  1    IPSTLPKGPTTGGGLTPEQKLRRRVRDLLAAAGFTEVITYSFTSPKDLDKL-LEDDPRRK  59

Query  469  AVKLANPKTVEFQVVRTSLLPGLLKTIRENKHHAVP-IKIFECSDVAFKDLTLERKSRNE  527
            AVKLANP + E  V+RTSLLPGLL+T+  N +   P +++FE   V   D  LE   R  
Sbjct  60   AVKLANPLSEELSVMRTSLLPGLLETLAYNLNRGNPDVRLFEIGRVFLPD-ELEELPREP  118

Query  528  RHFAAAWYG-----------RTSGFEVVHGLLDRIMAMLKSAFITGEECLENPAVNDSHY  576
            R  A    G           R   F  + G+++ ++A L                    Y
Sbjct  119  RRLAGLLTGKRLPESWQGKARPVDFYDLKGIVEALLAAL----------------GIDDY  162

Query  577  WIEELDEPTYFPGHAASIHLRIAGKDHVIGAFGILHPTVLEKYELKYPVSTLEINI  632
              E  D P   PG +A I +       VIG  G LHP V + ++L  PV   E+++
Sbjct  163  EFEAADHPALHPGRSAEILV----GGKVIGFIGELHPEVAKNFDLPQPVYVFELDL  214


>CDD:408077 pfam18262, PhetRS_B1, Phe-tRNA synthetase beta subunit B1 domain. 
 This is the N-terminal domain found in human cytosolic 
phenylalanyl tRNA synthetase beta subunit.
Length=83

 Score = 142 bits (360),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 48/83 (58%), Positives = 57/83 (69%), Gaps = 0/83 (0%)

Query  1   MPTISVDKAALFKELGREYTTEEFDELCFEFGIELDEDTTNSDRPIVDGKQEPPQLKIEI  60
           MPTISV K  LFK LGR YT EEF +LCFEFG+ELDE T+  ++     + E    KI+I
Sbjct  1   MPTISVKKVRLFKVLGRVYTEEEFSDLCFEFGLELDEITSEENQLKTSWRSEEVVYKIDI  60

Query  61  PANRYDLLCFEGIQLMLNIFLGR  83
           PANRYDLLC EG+   L IF G+
Sbjct  61  PANRYDLLCVEGLATALLIFKGK  83


>CDD:460942 pfam03484, B5, tRNA synthetase B5 domain.  This domain is found 
in phenylalanine-tRNA synthetase beta subunits.
Length=67

 Score = 87.1 bits (217),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query  341  EVSYINQCCGLELSPEEICKLLTKMAYQARPSASSPDLIDVDVPPTRADVLHQADIMEDV  400
             +  IN+  G++LS EEI ++L ++ ++        D + V VP  R D+LH+AD++E+V
Sbjct  4    RLDRINRLLGIDLSAEEIVEILERLGFEV--EEEDGDTLTVTVPSYRPDILHEADLIEEV  61

Query  401  AIAYGF  406
            A  YG+
Sbjct  62   ARIYGY  67


>CDD:427327 pfam03483, B3_4, B3/4 domain.  This domain is found in tRNA synthetase 
beta subunits as well as in some non tRNA synthetase 
proteins.
Length=174

 Score = 76.4 bits (189),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 54/174 (31%), Gaps = 59/174 (34%)

Query  111  VRPLVSGAILRNIKFDKARYESFIALQDKLH-------------QNLARQRTLVSIGTHD  157
              P   G ++R +K ++    S   LQ +L               N         +   D
Sbjct  1    ACPRYFGRVIRGVKKNR---PSPEWLQRRLRRAGIRPINNVVDITNYVMLELGQPLHAFD  57

Query  158  LDTIQGPFTYEALPPKDIKFVPLNQTKELNGEELMSFYEVWTDHLWLIAINTYIYKQKDK  217
            LD I G              V L +     GE+  +                     K++
Sbjct  58   LDKIAGDIV-----------VRLAKG----GEKFTTLDG------------------KER  84

Query  218  HLGKYLHIIRDSPVYPVIYDSKRTVCSLPPIINGDHSKITLDTKNVLIEITALD  271
             L          P   VI D    V +L  I+ G+ S++T DT N+ +E    D
Sbjct  85   EL---------DPGDLVIADDDGPV-ALAGIMGGEESEVTEDTTNIFLESAGFD  128



Lambda      K        H        a         alpha
   0.319    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 800810970


Query= TCONS_00000990

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA syntheta...  189     3e-57
CDD:408077 pfam18262, PhetRS_B1, Phe-tRNA synthetase beta subunit...  141     5e-41
CDD:460942 pfam03484, B5, tRNA synthetase B5 domain. This domain ...  86.7    1e-21
CDD:427327 pfam03483, B3_4, B3/4 domain. This domain is found in ...  87.2    1e-20


>CDD:465487 pfam17759, tRNA_synthFbeta, Phenylalanyl tRNA synthetase beta 
chain CLM domain.  This domain corresponds to the catalytic 
like domain (CLM) in the beta chain of phe tRNA synthetase.
Length=214

 Score = 189 bits (483),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 72/236 (31%), Positives = 99/236 (42%), Gaps = 34/236 (14%)

Query  373  LPRSFPSKSGTIAQPLPINKLSDIVRMEAAMAGWTEVLPLILCSHDENFAWLNRKDDGTT  432
            +P + P    T     P  KL   VR   A AG+TEV+     S  +        D    
Sbjct  1    IPSTLPKGPTTGGGLTPEQKLRRRVRDLLAAAGFTEVITYSFTSPKDLDKL-LEDDPRRK  59

Query  433  AVKLANPKTVEFQVVRTSLLPGLLKTIRENKHHAVP-IKIFECSDVAFKDLTLERKSRNE  491
            AVKLANP + E  V+RTSLLPGLL+T+  N +   P +++FE   V   D  LE   R  
Sbjct  60   AVKLANPLSEELSVMRTSLLPGLLETLAYNLNRGNPDVRLFEIGRVFLPD-ELEELPREP  118

Query  492  RHFAAAWYG-----------RTSGFEVVHGLLDRIMAMLKSAFITGEECLENPAVNDSHY  540
            R  A    G           R   F  + G+++ ++A L                    Y
Sbjct  119  RRLAGLLTGKRLPESWQGKARPVDFYDLKGIVEALLAAL----------------GIDDY  162

Query  541  WIEELDEPTYFPGHAASIHLRIAGKDHVIGAFGILHPTVLEKYELKYPVSTLEINI  596
              E  D P   PG +A I +       VIG  G LHP V + ++L  PV   E+++
Sbjct  163  EFEAADHPALHPGRSAEILV----GGKVIGFIGELHPEVAKNFDLPQPVYVFELDL  214


>CDD:408077 pfam18262, PhetRS_B1, Phe-tRNA synthetase beta subunit B1 domain. 
 This is the N-terminal domain found in human cytosolic 
phenylalanyl tRNA synthetase beta subunit.
Length=83

 Score = 141 bits (357),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 48/83 (58%), Positives = 57/83 (69%), Gaps = 0/83 (0%)

Query  1   MPTISVDKAALFKELGREYTTEEFDELCFEFGIELDEDTTNSDRPIVDGKQEPPQLKIEI  60
           MPTISV K  LFK LGR YT EEF +LCFEFG+ELDE T+  ++     + E    KI+I
Sbjct  1   MPTISVKKVRLFKVLGRVYTEEEFSDLCFEFGLELDEITSEENQLKTSWRSEEVVYKIDI  60

Query  61  PANRYDLLCFEGIQLMLNIFLGR  83
           PANRYDLLC EG+   L IF G+
Sbjct  61  PANRYDLLCVEGLATALLIFKGK  83


>CDD:460942 pfam03484, B5, tRNA synthetase B5 domain.  This domain is found 
in phenylalanine-tRNA synthetase beta subunits.
Length=67

 Score = 86.7 bits (216),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query  305  EVSYINQCCGLELSPEEICKLLTKMAYQARPSASSPDLIDVDVPPTRADVLHQADIMEDV  364
             +  IN+  G++LS EEI ++L ++ ++        D + V VP  R D+LH+AD++E+V
Sbjct  4    RLDRINRLLGIDLSAEEIVEILERLGFEV--EEEDGDTLTVTVPSYRPDILHEADLIEEV  61

Query  365  AIAYGF  370
            A  YG+
Sbjct  62   ARIYGY  67


>CDD:427327 pfam03483, B3_4, B3/4 domain.  This domain is found in tRNA synthetase 
beta subunits as well as in some non tRNA synthetase 
proteins.
Length=174

 Score = 87.2 bits (217),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 54/156 (35%), Gaps = 41/156 (26%)

Query  111  VRPLVSGAILRNIKFDKARYESFIALQDKLH-------------QNLARQRTLVSIGTHD  157
              P   G ++R +K ++    S   LQ +L               N         +   D
Sbjct  1    ACPRYFGRVIRGVKKNR---PSPEWLQRRLRRAGIRPINNVVDITNYVMLELGQPLHAFD  57

Query  158  LDTIQGPFTYEALPPKDIKFVPLNQTKELNGEELMSFYEKDKHLGKYLHIIRDSPVYPVI  217
            LD I G              V L +     GE+  +   K++ L          P   VI
Sbjct  58   LDKIAGDIV-----------VRLAKG----GEKFTTLDGKEREL---------DPGDLVI  93

Query  218  YDSKRTVCSLPPIINGDHSKITLDTKNVLIEITALD  253
             D    V +L  I+ G+ S++T DT N+ +E    D
Sbjct  94   ADDDGPV-ALAGIMGGEESEVTEDTTNIFLESAGFD  128



Lambda      K        H        a         alpha
   0.319    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 759169424


Query= TCONS_00000991

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463058 pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1 pro...  60.0    6e-12


>CDD:463058 pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1 proteins. 
 This version of the C2 domain was initally identified in the 
vertebrate estrogen early-induced gene 1 (EEIG1), and its 
Drosophila ortholog required for uptake of dsRNA via the endocytotic 
machinery to induce RNAi silencing. It is also in C.elegans 
ortholog Sym-3 (SYnthetic lethal with Mec-3) and the 
mammalian protein EHBP1 (EH domain Binding Protein-1) that 
regulates endocytotic recycling and two plant proteins, RPG 
that regulates Rhizobium-directed polar growth and PMI1 (Plastid 
Movement Impaired 1) that is essential for intracellular 
movement of chloroplasts in response to blue light.
Length=143

 Score = 60.0 bits (146),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 17/59 (29%), Positives = 30/59 (51%), Gaps = 3/59 (5%)

Query  8    GHSDKNFLGRIRLNLAEYVDKSDDEEGIVRRYLMQDS-KVNSTLRVGIVMHQIDGDRNF  65
                K  LG+  ++LAEY +    ++    R+L++ S K N+TL + I +  +  D N 
Sbjct  87   KKGKKKVLGKASIDLAEYANL--KKKPTTVRFLLKKSSKKNATLSLSIQVLPLGEDPND  143



Lambda      K        H        a         alpha
   0.315    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00000994

Length=678


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 862752150


Query= TCONS_00000993

Length=678


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 862752150


Query= TCONS_00000992

Length=678


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 862752150


Query= TCONS_00006927

Length=650


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 821458030


Query= TCONS_00000995

Length=678


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 862752150


Query= TCONS_00000996

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00000997

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00006928

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00000998

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00000999

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00001000

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0681    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00006929

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00006930

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00001001

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00001003

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00001002

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00001004

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00006931

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00006932

Length=25


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82528100


Query= TCONS_00001005

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ER...  305     2e-103


>CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ERG24 family. 
 
Length=429

 Score = 305 bits (782),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 133/255 (52%), Positives = 164/255 (64%), Gaps = 30/255 (12%)

Query  1    MRPGLLGWIILDLSNIAHQYRTYGYITDSIVLTTAFQAFYVLDALYMEPALLTTMDVIMD  60
            +RPGLLGW+ ++L+ +  QY TYGY+T S++     Q  YV D L  E A+LTTMD+  D
Sbjct  204  LRPGLLGWVFINLAALLKQYETYGYVTPSLLFVLLNQLLYVFDGLKNEEAVLTTMDITTD  263

Query  61   GFGFMLSFGDMVWVPFLYNFQTRYLSVYPSELGLSGILI-VLAVTAAGYVIFRGANNQKN  119
            GFGFML+FGD+VWVPF Y+ QTRYLSV+PSELG S   + + A+   GY IFR AN+QKN
Sbjct  264  GFGFMLAFGDLVWVPFTYSLQTRYLSVHPSELGWSTYAVAIYALLLCGYYIFRSANSQKN  323

Query  120  RFRTDPNDPRVKHLKYIETKTGSKLLISGWWGCARHINYLGDWIMSWSYCLPTGVAGYAI  179
             FRT+P DP++ +LKYI+TKTGS LL  GWWG ARHINYLGDW+ S S+ LPTG      
Sbjct  324  NFRTNPADPKLIYLKYIQTKTGSGLLTDGWWGFARHINYLGDWLQSLSWSLPTGFN----  379

Query  180  IESINPASGEMQKQAVQTPESRGWGMIFTYFYMIYFGVLLLHRERRDEEKCKRKYGADWN  239
                                      +  YFY +YF VLL+HRE RDE KCK+KYG DW 
Sbjct  380  -------------------------SVLPYFYPLYFAVLLVHREARDEHKCKKKYGLDWE  414

Query  240  RYTSLVRSRIIPGIY  254
             Y   V   IIP +Y
Sbjct  415  EYCKRVPYHIIPYVY  429



Lambda      K        H        a         alpha
   0.326    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00001006

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00001010

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ER...  305     2e-103


>CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ERG24 family. 
 
Length=429

 Score = 305 bits (782),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 133/255 (52%), Positives = 164/255 (64%), Gaps = 30/255 (12%)

Query  1    MRPGLLGWIILDLSNIAHQYRTYGYITDSIVLTTAFQAFYVLDALYMEPALLTTMDVIMD  60
            +RPGLLGW+ ++L+ +  QY TYGY+T S++     Q  YV D L  E A+LTTMD+  D
Sbjct  204  LRPGLLGWVFINLAALLKQYETYGYVTPSLLFVLLNQLLYVFDGLKNEEAVLTTMDITTD  263

Query  61   GFGFMLSFGDMVWVPFLYNFQTRYLSVYPSELGLSGILI-VLAVTAAGYVIFRGANNQKN  119
            GFGFML+FGD+VWVPF Y+ QTRYLSV+PSELG S   + + A+   GY IFR AN+QKN
Sbjct  264  GFGFMLAFGDLVWVPFTYSLQTRYLSVHPSELGWSTYAVAIYALLLCGYYIFRSANSQKN  323

Query  120  RFRTDPNDPRVKHLKYIETKTGSKLLISGWWGCARHINYLGDWIMSWSYCLPTGVAGYAI  179
             FRT+P DP++ +LKYI+TKTGS LL  GWWG ARHINYLGDW+ S S+ LPTG      
Sbjct  324  NFRTNPADPKLIYLKYIQTKTGSGLLTDGWWGFARHINYLGDWLQSLSWSLPTGFN----  379

Query  180  IESINPASGEMQKQAVQTPESRGWGMIFTYFYMIYFGVLLLHRERRDEEKCKRKYGADWN  239
                                      +  YFY +YF VLL+HRE RDE KCK+KYG DW 
Sbjct  380  -------------------------SVLPYFYPLYFAVLLVHREARDEHKCKKKYGLDWE  414

Query  240  RYTSLVRSRIIPGIY  254
             Y   V   IIP +Y
Sbjct  415  EYCKRVPYHIIPYVY  429



Lambda      K        H        a         alpha
   0.326    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00001007

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ER...  305     2e-103


>CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ERG24 family. 
 
Length=429

 Score = 305 bits (782),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 133/255 (52%), Positives = 164/255 (64%), Gaps = 30/255 (12%)

Query  1    MRPGLLGWIILDLSNIAHQYRTYGYITDSIVLTTAFQAFYVLDALYMEPALLTTMDVIMD  60
            +RPGLLGW+ ++L+ +  QY TYGY+T S++     Q  YV D L  E A+LTTMD+  D
Sbjct  204  LRPGLLGWVFINLAALLKQYETYGYVTPSLLFVLLNQLLYVFDGLKNEEAVLTTMDITTD  263

Query  61   GFGFMLSFGDMVWVPFLYNFQTRYLSVYPSELGLSGILI-VLAVTAAGYVIFRGANNQKN  119
            GFGFML+FGD+VWVPF Y+ QTRYLSV+PSELG S   + + A+   GY IFR AN+QKN
Sbjct  264  GFGFMLAFGDLVWVPFTYSLQTRYLSVHPSELGWSTYAVAIYALLLCGYYIFRSANSQKN  323

Query  120  RFRTDPNDPRVKHLKYIETKTGSKLLISGWWGCARHINYLGDWIMSWSYCLPTGVAGYAI  179
             FRT+P DP++ +LKYI+TKTGS LL  GWWG ARHINYLGDW+ S S+ LPTG      
Sbjct  324  NFRTNPADPKLIYLKYIQTKTGSGLLTDGWWGFARHINYLGDWLQSLSWSLPTGFN----  379

Query  180  IESINPASGEMQKQAVQTPESRGWGMIFTYFYMIYFGVLLLHRERRDEEKCKRKYGADWN  239
                                      +  YFY +YF VLL+HRE RDE KCK+KYG DW 
Sbjct  380  -------------------------SVLPYFYPLYFAVLLVHREARDEHKCKKKYGLDWE  414

Query  240  RYTSLVRSRIIPGIY  254
             Y   V   IIP +Y
Sbjct  415  EYCKRVPYHIIPYVY  429



Lambda      K        H        a         alpha
   0.326    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00001008

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ER...  305     2e-103


>CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ERG24 family. 
 
Length=429

 Score = 305 bits (782),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 133/255 (52%), Positives = 164/255 (64%), Gaps = 30/255 (12%)

Query  1    MRPGLLGWIILDLSNIAHQYRTYGYITDSIVLTTAFQAFYVLDALYMEPALLTTMDVIMD  60
            +RPGLLGW+ ++L+ +  QY TYGY+T S++     Q  YV D L  E A+LTTMD+  D
Sbjct  204  LRPGLLGWVFINLAALLKQYETYGYVTPSLLFVLLNQLLYVFDGLKNEEAVLTTMDITTD  263

Query  61   GFGFMLSFGDMVWVPFLYNFQTRYLSVYPSELGLSGILI-VLAVTAAGYVIFRGANNQKN  119
            GFGFML+FGD+VWVPF Y+ QTRYLSV+PSELG S   + + A+   GY IFR AN+QKN
Sbjct  264  GFGFMLAFGDLVWVPFTYSLQTRYLSVHPSELGWSTYAVAIYALLLCGYYIFRSANSQKN  323

Query  120  RFRTDPNDPRVKHLKYIETKTGSKLLISGWWGCARHINYLGDWIMSWSYCLPTGVAGYAI  179
             FRT+P DP++ +LKYI+TKTGS LL  GWWG ARHINYLGDW+ S S+ LPTG      
Sbjct  324  NFRTNPADPKLIYLKYIQTKTGSGLLTDGWWGFARHINYLGDWLQSLSWSLPTGFN----  379

Query  180  IESINPASGEMQKQAVQTPESRGWGMIFTYFYMIYFGVLLLHRERRDEEKCKRKYGADWN  239
                                      +  YFY +YF VLL+HRE RDE KCK+KYG DW 
Sbjct  380  -------------------------SVLPYFYPLYFAVLLVHREARDEHKCKKKYGLDWE  414

Query  240  RYTSLVRSRIIPGIY  254
             Y   V   IIP +Y
Sbjct  415  EYCKRVPYHIIPYVY  429



Lambda      K        H        a         alpha
   0.326    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00001014

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ER...  305     2e-103


>CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ERG24 family. 
 
Length=429

 Score = 305 bits (782),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 133/255 (52%), Positives = 164/255 (64%), Gaps = 30/255 (12%)

Query  1    MRPGLLGWIILDLSNIAHQYRTYGYITDSIVLTTAFQAFYVLDALYMEPALLTTMDVIMD  60
            +RPGLLGW+ ++L+ +  QY TYGY+T S++     Q  YV D L  E A+LTTMD+  D
Sbjct  204  LRPGLLGWVFINLAALLKQYETYGYVTPSLLFVLLNQLLYVFDGLKNEEAVLTTMDITTD  263

Query  61   GFGFMLSFGDMVWVPFLYNFQTRYLSVYPSELGLSGILI-VLAVTAAGYVIFRGANNQKN  119
            GFGFML+FGD+VWVPF Y+ QTRYLSV+PSELG S   + + A+   GY IFR AN+QKN
Sbjct  264  GFGFMLAFGDLVWVPFTYSLQTRYLSVHPSELGWSTYAVAIYALLLCGYYIFRSANSQKN  323

Query  120  RFRTDPNDPRVKHLKYIETKTGSKLLISGWWGCARHINYLGDWIMSWSYCLPTGVAGYAI  179
             FRT+P DP++ +LKYI+TKTGS LL  GWWG ARHINYLGDW+ S S+ LPTG      
Sbjct  324  NFRTNPADPKLIYLKYIQTKTGSGLLTDGWWGFARHINYLGDWLQSLSWSLPTGFN----  379

Query  180  IESINPASGEMQKQAVQTPESRGWGMIFTYFYMIYFGVLLLHRERRDEEKCKRKYGADWN  239
                                      +  YFY +YF VLL+HRE RDE KCK+KYG DW 
Sbjct  380  -------------------------SVLPYFYPLYFAVLLVHREARDEHKCKKKYGLDWE  414

Query  240  RYTSLVRSRIIPGIY  254
             Y   V   IIP +Y
Sbjct  415  EYCKRVPYHIIPYVY  429



Lambda      K        H        a         alpha
   0.326    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00001011

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ER...  305     2e-103


>CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ERG24 family. 
 
Length=429

 Score = 305 bits (782),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 133/255 (52%), Positives = 164/255 (64%), Gaps = 30/255 (12%)

Query  1    MRPGLLGWIILDLSNIAHQYRTYGYITDSIVLTTAFQAFYVLDALYMEPALLTTMDVIMD  60
            +RPGLLGW+ ++L+ +  QY TYGY+T S++     Q  YV D L  E A+LTTMD+  D
Sbjct  204  LRPGLLGWVFINLAALLKQYETYGYVTPSLLFVLLNQLLYVFDGLKNEEAVLTTMDITTD  263

Query  61   GFGFMLSFGDMVWVPFLYNFQTRYLSVYPSELGLSGILI-VLAVTAAGYVIFRGANNQKN  119
            GFGFML+FGD+VWVPF Y+ QTRYLSV+PSELG S   + + A+   GY IFR AN+QKN
Sbjct  264  GFGFMLAFGDLVWVPFTYSLQTRYLSVHPSELGWSTYAVAIYALLLCGYYIFRSANSQKN  323

Query  120  RFRTDPNDPRVKHLKYIETKTGSKLLISGWWGCARHINYLGDWIMSWSYCLPTGVAGYAI  179
             FRT+P DP++ +LKYI+TKTGS LL  GWWG ARHINYLGDW+ S S+ LPTG      
Sbjct  324  NFRTNPADPKLIYLKYIQTKTGSGLLTDGWWGFARHINYLGDWLQSLSWSLPTGFN----  379

Query  180  IESINPASGEMQKQAVQTPESRGWGMIFTYFYMIYFGVLLLHRERRDEEKCKRKYGADWN  239
                                      +  YFY +YF VLL+HRE RDE KCK+KYG DW 
Sbjct  380  -------------------------SVLPYFYPLYFAVLLVHREARDEHKCKKKYGLDWE  414

Query  240  RYTSLVRSRIIPGIY  254
             Y   V   IIP +Y
Sbjct  415  EYCKRVPYHIIPYVY  429



Lambda      K        H        a         alpha
   0.326    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00001009

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ER...  305     2e-103


>CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ERG24 family. 
 
Length=429

 Score = 305 bits (782),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 133/255 (52%), Positives = 164/255 (64%), Gaps = 30/255 (12%)

Query  1    MRPGLLGWIILDLSNIAHQYRTYGYITDSIVLTTAFQAFYVLDALYMEPALLTTMDVIMD  60
            +RPGLLGW+ ++L+ +  QY TYGY+T S++     Q  YV D L  E A+LTTMD+  D
Sbjct  204  LRPGLLGWVFINLAALLKQYETYGYVTPSLLFVLLNQLLYVFDGLKNEEAVLTTMDITTD  263

Query  61   GFGFMLSFGDMVWVPFLYNFQTRYLSVYPSELGLSGILI-VLAVTAAGYVIFRGANNQKN  119
            GFGFML+FGD+VWVPF Y+ QTRYLSV+PSELG S   + + A+   GY IFR AN+QKN
Sbjct  264  GFGFMLAFGDLVWVPFTYSLQTRYLSVHPSELGWSTYAVAIYALLLCGYYIFRSANSQKN  323

Query  120  RFRTDPNDPRVKHLKYIETKTGSKLLISGWWGCARHINYLGDWIMSWSYCLPTGVAGYAI  179
             FRT+P DP++ +LKYI+TKTGS LL  GWWG ARHINYLGDW+ S S+ LPTG      
Sbjct  324  NFRTNPADPKLIYLKYIQTKTGSGLLTDGWWGFARHINYLGDWLQSLSWSLPTGFN----  379

Query  180  IESINPASGEMQKQAVQTPESRGWGMIFTYFYMIYFGVLLLHRERRDEEKCKRKYGADWN  239
                                      +  YFY +YF VLL+HRE RDE KCK+KYG DW 
Sbjct  380  -------------------------SVLPYFYPLYFAVLLVHREARDEHKCKKKYGLDWE  414

Query  240  RYTSLVRSRIIPGIY  254
             Y   V   IIP +Y
Sbjct  415  EYCKRVPYHIIPYVY  429



Lambda      K        H        a         alpha
   0.326    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00001012

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ER...  305     2e-103


>CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ERG24 family. 
 
Length=429

 Score = 305 bits (782),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 133/255 (52%), Positives = 164/255 (64%), Gaps = 30/255 (12%)

Query  1    MRPGLLGWIILDLSNIAHQYRTYGYITDSIVLTTAFQAFYVLDALYMEPALLTTMDVIMD  60
            +RPGLLGW+ ++L+ +  QY TYGY+T S++     Q  YV D L  E A+LTTMD+  D
Sbjct  204  LRPGLLGWVFINLAALLKQYETYGYVTPSLLFVLLNQLLYVFDGLKNEEAVLTTMDITTD  263

Query  61   GFGFMLSFGDMVWVPFLYNFQTRYLSVYPSELGLSGILI-VLAVTAAGYVIFRGANNQKN  119
            GFGFML+FGD+VWVPF Y+ QTRYLSV+PSELG S   + + A+   GY IFR AN+QKN
Sbjct  264  GFGFMLAFGDLVWVPFTYSLQTRYLSVHPSELGWSTYAVAIYALLLCGYYIFRSANSQKN  323

Query  120  RFRTDPNDPRVKHLKYIETKTGSKLLISGWWGCARHINYLGDWIMSWSYCLPTGVAGYAI  179
             FRT+P DP++ +LKYI+TKTGS LL  GWWG ARHINYLGDW+ S S+ LPTG      
Sbjct  324  NFRTNPADPKLIYLKYIQTKTGSGLLTDGWWGFARHINYLGDWLQSLSWSLPTGFN----  379

Query  180  IESINPASGEMQKQAVQTPESRGWGMIFTYFYMIYFGVLLLHRERRDEEKCKRKYGADWN  239
                                      +  YFY +YF VLL+HRE RDE KCK+KYG DW 
Sbjct  380  -------------------------SVLPYFYPLYFAVLLVHREARDEHKCKKKYGLDWE  414

Query  240  RYTSLVRSRIIPGIY  254
             Y   V   IIP +Y
Sbjct  415  EYCKRVPYHIIPYVY  429



Lambda      K        H        a         alpha
   0.326    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00001013

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ER...  305     2e-103


>CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ERG24 family. 
 
Length=429

 Score = 305 bits (782),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 133/255 (52%), Positives = 164/255 (64%), Gaps = 30/255 (12%)

Query  1    MRPGLLGWIILDLSNIAHQYRTYGYITDSIVLTTAFQAFYVLDALYMEPALLTTMDVIMD  60
            +RPGLLGW+ ++L+ +  QY TYGY+T S++     Q  YV D L  E A+LTTMD+  D
Sbjct  204  LRPGLLGWVFINLAALLKQYETYGYVTPSLLFVLLNQLLYVFDGLKNEEAVLTTMDITTD  263

Query  61   GFGFMLSFGDMVWVPFLYNFQTRYLSVYPSELGLSGILI-VLAVTAAGYVIFRGANNQKN  119
            GFGFML+FGD+VWVPF Y+ QTRYLSV+PSELG S   + + A+   GY IFR AN+QKN
Sbjct  264  GFGFMLAFGDLVWVPFTYSLQTRYLSVHPSELGWSTYAVAIYALLLCGYYIFRSANSQKN  323

Query  120  RFRTDPNDPRVKHLKYIETKTGSKLLISGWWGCARHINYLGDWIMSWSYCLPTGVAGYAI  179
             FRT+P DP++ +LKYI+TKTGS LL  GWWG ARHINYLGDW+ S S+ LPTG      
Sbjct  324  NFRTNPADPKLIYLKYIQTKTGSGLLTDGWWGFARHINYLGDWLQSLSWSLPTGFN----  379

Query  180  IESINPASGEMQKQAVQTPESRGWGMIFTYFYMIYFGVLLLHRERRDEEKCKRKYGADWN  239
                                      +  YFY +YF VLL+HRE RDE KCK+KYG DW 
Sbjct  380  -------------------------SVLPYFYPLYFAVLLVHREARDEHKCKKKYGLDWE  414

Query  240  RYTSLVRSRIIPGIY  254
             Y   V   IIP +Y
Sbjct  415  EYCKRVPYHIIPYVY  429



Lambda      K        H        a         alpha
   0.326    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00006933

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ER...  305     2e-103


>CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ERG24 family. 
 
Length=429

 Score = 305 bits (782),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 133/255 (52%), Positives = 164/255 (64%), Gaps = 30/255 (12%)

Query  1    MRPGLLGWIILDLSNIAHQYRTYGYITDSIVLTTAFQAFYVLDALYMEPALLTTMDVIMD  60
            +RPGLLGW+ ++L+ +  QY TYGY+T S++     Q  YV D L  E A+LTTMD+  D
Sbjct  204  LRPGLLGWVFINLAALLKQYETYGYVTPSLLFVLLNQLLYVFDGLKNEEAVLTTMDITTD  263

Query  61   GFGFMLSFGDMVWVPFLYNFQTRYLSVYPSELGLSGILI-VLAVTAAGYVIFRGANNQKN  119
            GFGFML+FGD+VWVPF Y+ QTRYLSV+PSELG S   + + A+   GY IFR AN+QKN
Sbjct  264  GFGFMLAFGDLVWVPFTYSLQTRYLSVHPSELGWSTYAVAIYALLLCGYYIFRSANSQKN  323

Query  120  RFRTDPNDPRVKHLKYIETKTGSKLLISGWWGCARHINYLGDWIMSWSYCLPTGVAGYAI  179
             FRT+P DP++ +LKYI+TKTGS LL  GWWG ARHINYLGDW+ S S+ LPTG      
Sbjct  324  NFRTNPADPKLIYLKYIQTKTGSGLLTDGWWGFARHINYLGDWLQSLSWSLPTGFN----  379

Query  180  IESINPASGEMQKQAVQTPESRGWGMIFTYFYMIYFGVLLLHRERRDEEKCKRKYGADWN  239
                                      +  YFY +YF VLL+HRE RDE KCK+KYG DW 
Sbjct  380  -------------------------SVLPYFYPLYFAVLLVHREARDEHKCKKKYGLDWE  414

Query  240  RYTSLVRSRIIPGIY  254
             Y   V   IIP +Y
Sbjct  415  EYCKRVPYHIIPYVY  429



Lambda      K        H        a         alpha
   0.326    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00001015

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ER...  305     2e-103


>CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ERG24 family. 
 
Length=429

 Score = 305 bits (782),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 133/255 (52%), Positives = 164/255 (64%), Gaps = 30/255 (12%)

Query  1    MRPGLLGWIILDLSNIAHQYRTYGYITDSIVLTTAFQAFYVLDALYMEPALLTTMDVIMD  60
            +RPGLLGW+ ++L+ +  QY TYGY+T S++     Q  YV D L  E A+LTTMD+  D
Sbjct  204  LRPGLLGWVFINLAALLKQYETYGYVTPSLLFVLLNQLLYVFDGLKNEEAVLTTMDITTD  263

Query  61   GFGFMLSFGDMVWVPFLYNFQTRYLSVYPSELGLSGILI-VLAVTAAGYVIFRGANNQKN  119
            GFGFML+FGD+VWVPF Y+ QTRYLSV+PSELG S   + + A+   GY IFR AN+QKN
Sbjct  264  GFGFMLAFGDLVWVPFTYSLQTRYLSVHPSELGWSTYAVAIYALLLCGYYIFRSANSQKN  323

Query  120  RFRTDPNDPRVKHLKYIETKTGSKLLISGWWGCARHINYLGDWIMSWSYCLPTGVAGYAI  179
             FRT+P DP++ +LKYI+TKTGS LL  GWWG ARHINYLGDW+ S S+ LPTG      
Sbjct  324  NFRTNPADPKLIYLKYIQTKTGSGLLTDGWWGFARHINYLGDWLQSLSWSLPTGFN----  379

Query  180  IESINPASGEMQKQAVQTPESRGWGMIFTYFYMIYFGVLLLHRERRDEEKCKRKYGADWN  239
                                      +  YFY +YF VLL+HRE RDE KCK+KYG DW 
Sbjct  380  -------------------------SVLPYFYPLYFAVLLVHREARDEHKCKKKYGLDWE  414

Query  240  RYTSLVRSRIIPGIY  254
             Y   V   IIP +Y
Sbjct  415  EYCKRVPYHIIPYVY  429



Lambda      K        H        a         alpha
   0.326    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00001016

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ER...  305     2e-103


>CDD:250456 pfam01222, ERG4_ERG24, Ergosterol biosynthesis ERG4/ERG24 family. 
 
Length=429

 Score = 305 bits (782),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 133/255 (52%), Positives = 164/255 (64%), Gaps = 30/255 (12%)

Query  1    MRPGLLGWIILDLSNIAHQYRTYGYITDSIVLTTAFQAFYVLDALYMEPALLTTMDVIMD  60
            +RPGLLGW+ ++L+ +  QY TYGY+T S++     Q  YV D L  E A+LTTMD+  D
Sbjct  204  LRPGLLGWVFINLAALLKQYETYGYVTPSLLFVLLNQLLYVFDGLKNEEAVLTTMDITTD  263

Query  61   GFGFMLSFGDMVWVPFLYNFQTRYLSVYPSELGLSGILI-VLAVTAAGYVIFRGANNQKN  119
            GFGFML+FGD+VWVPF Y+ QTRYLSV+PSELG S   + + A+   GY IFR AN+QKN
Sbjct  264  GFGFMLAFGDLVWVPFTYSLQTRYLSVHPSELGWSTYAVAIYALLLCGYYIFRSANSQKN  323

Query  120  RFRTDPNDPRVKHLKYIETKTGSKLLISGWWGCARHINYLGDWIMSWSYCLPTGVAGYAI  179
             FRT+P DP++ +LKYI+TKTGS LL  GWWG ARHINYLGDW+ S S+ LPTG      
Sbjct  324  NFRTNPADPKLIYLKYIQTKTGSGLLTDGWWGFARHINYLGDWLQSLSWSLPTGFN----  379

Query  180  IESINPASGEMQKQAVQTPESRGWGMIFTYFYMIYFGVLLLHRERRDEEKCKRKYGADWN  239
                                      +  YFY +YF VLL+HRE RDE KCK+KYG DW 
Sbjct  380  -------------------------SVLPYFYPLYFAVLLVHREARDEHKCKKKYGLDWE  414

Query  240  RYTSLVRSRIIPGIY  254
             Y   V   IIP +Y
Sbjct  415  EYCKRVPYHIIPYVY  429



Lambda      K        H        a         alpha
   0.326    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00001017

Length=351


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00006934

Length=380


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00001019

Length=950
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  111     1e-27
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  63.5    1e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 111 bits (279),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 113/278 (41%), Gaps = 32/278 (12%)

Query  247  EVFFDCVYGQSYLLLHKPSFMRRL------KARTVPPVLILAVCAVSARFSTHPQLSSDP  300
            ++FF   + Q + +LH+PSF+R         +    P+L+LA+ A+ A FS  P   S  
Sbjct  2    DLFFKNFHPQ-FPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  301  PF--LRGENWANPAAAIALSRHD----EPSITILTVFLLLGLHEFGTCHGGRSWSFGGQA  354
                   +       A+ L   D      S+ IL   LLL L+E GT      W + G A
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGLA  120

Query  355  LRMAYALQLHRELDYDPLLSQGSGNGAQLSFTDREIRRRTMWACFLMDRYNSSGSQRPPI  414
            +R+A +L LHR+  Y            +L   + E+RRR  WACF +DR  S    RPP+
Sbjct  121  IRLARSLGLHRDPSY-------VSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPL  173

Query  415  GNEKFLQIQLPIKESSFQLEIPGPTEDLEGNVPNPVPDDVGQLSNAKDNMGVSAYIIRAV  474
             ++  + + LP             + D                S    ++    ++I+  
Sbjct  174  LSDSDIDLPLP---CDDDDLWESDSADEVTLPLI---------SLESKSIKPPLFLIKLS  221

Query  475  VIWGRIVDYLNLGGKKRDPHPLWSPESGYMKLKRQIED  512
             I  +I+  L       D   L    S   +L+R +++
Sbjct  222  KILSKILGSLLSIRSTLDQRDLQLKLSWVRELERALDN  259


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 63.5 bits (155),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 15/37 (41%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  96   ACIACRRKKIRCSGEKPACKHCSRSRIPCVYKVTTRK  132
            AC  CR++K++C G+KPAC  C ++ + C Y   ++K
Sbjct  2    ACDNCRKRKVKCDGKKPACSRCIKNGLECTYSRKSKK  38



Lambda      K        H        a         alpha
   0.317    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1209158104


Query= TCONS_00006936

Length=950
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  111     1e-27
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  63.5    1e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 111 bits (279),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 113/278 (41%), Gaps = 32/278 (12%)

Query  247  EVFFDCVYGQSYLLLHKPSFMRRL------KARTVPPVLILAVCAVSARFSTHPQLSSDP  300
            ++FF   + Q + +LH+PSF+R         +    P+L+LA+ A+ A FS  P   S  
Sbjct  2    DLFFKNFHPQ-FPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  301  PF--LRGENWANPAAAIALSRHD----EPSITILTVFLLLGLHEFGTCHGGRSWSFGGQA  354
                   +       A+ L   D      S+ IL   LLL L+E GT      W + G A
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGLA  120

Query  355  LRMAYALQLHRELDYDPLLSQGSGNGAQLSFTDREIRRRTMWACFLMDRYNSSGSQRPPI  414
            +R+A +L LHR+  Y            +L   + E+RRR  WACF +DR  S    RPP+
Sbjct  121  IRLARSLGLHRDPSY-------VSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPL  173

Query  415  GNEKFLQIQLPIKESSFQLEIPGPTEDLEGNVPNPVPDDVGQLSNAKDNMGVSAYIIRAV  474
             ++  + + LP             + D                S    ++    ++I+  
Sbjct  174  LSDSDIDLPLP---CDDDDLWESDSADEVTLPLI---------SLESKSIKPPLFLIKLS  221

Query  475  VIWGRIVDYLNLGGKKRDPHPLWSPESGYMKLKRQIED  512
             I  +I+  L       D   L    S   +L+R +++
Sbjct  222  KILSKILGSLLSIRSTLDQRDLQLKLSWVRELERALDN  259


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 63.5 bits (155),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 15/37 (41%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  96   ACIACRRKKIRCSGEKPACKHCSRSRIPCVYKVTTRK  132
            AC  CR++K++C G+KPAC  C ++ + C Y   ++K
Sbjct  2    ACDNCRKRKVKCDGKKPACSRCIKNGLECTYSRKSKK  38



Lambda      K        H        a         alpha
   0.317    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1209158104


Query= TCONS_00006935

Length=950
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  111     1e-27
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  63.5    1e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 111 bits (279),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 113/278 (41%), Gaps = 32/278 (12%)

Query  247  EVFFDCVYGQSYLLLHKPSFMRRL------KARTVPPVLILAVCAVSARFSTHPQLSSDP  300
            ++FF   + Q + +LH+PSF+R         +    P+L+LA+ A+ A FS  P   S  
Sbjct  2    DLFFKNFHPQ-FPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  301  PF--LRGENWANPAAAIALSRHD----EPSITILTVFLLLGLHEFGTCHGGRSWSFGGQA  354
                   +       A+ L   D      S+ IL   LLL L+E GT      W + G A
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGLA  120

Query  355  LRMAYALQLHRELDYDPLLSQGSGNGAQLSFTDREIRRRTMWACFLMDRYNSSGSQRPPI  414
            +R+A +L LHR+  Y            +L   + E+RRR  WACF +DR  S    RPP+
Sbjct  121  IRLARSLGLHRDPSY-------VSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPL  173

Query  415  GNEKFLQIQLPIKESSFQLEIPGPTEDLEGNVPNPVPDDVGQLSNAKDNMGVSAYIIRAV  474
             ++  + + LP             + D                S    ++    ++I+  
Sbjct  174  LSDSDIDLPLP---CDDDDLWESDSADEVTLPLI---------SLESKSIKPPLFLIKLS  221

Query  475  VIWGRIVDYLNLGGKKRDPHPLWSPESGYMKLKRQIED  512
             I  +I+  L       D   L    S   +L+R +++
Sbjct  222  KILSKILGSLLSIRSTLDQRDLQLKLSWVRELERALDN  259


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 63.5 bits (155),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 15/37 (41%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  96   ACIACRRKKIRCSGEKPACKHCSRSRIPCVYKVTTRK  132
            AC  CR++K++C G+KPAC  C ++ + C Y   ++K
Sbjct  2    ACDNCRKRKVKCDGKKPACSRCIKNGLECTYSRKSKK  38



Lambda      K        H        a         alpha
   0.317    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1209158104


Query= TCONS_00006937

Length=950
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  111     1e-27
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  63.5    1e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 111 bits (279),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 113/278 (41%), Gaps = 32/278 (12%)

Query  247  EVFFDCVYGQSYLLLHKPSFMRRL------KARTVPPVLILAVCAVSARFSTHPQLSSDP  300
            ++FF   + Q + +LH+PSF+R         +    P+L+LA+ A+ A FS  P   S  
Sbjct  2    DLFFKNFHPQ-FPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  301  PF--LRGENWANPAAAIALSRHD----EPSITILTVFLLLGLHEFGTCHGGRSWSFGGQA  354
                   +       A+ L   D      S+ IL   LLL L+E GT      W + G A
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGLA  120

Query  355  LRMAYALQLHRELDYDPLLSQGSGNGAQLSFTDREIRRRTMWACFLMDRYNSSGSQRPPI  414
            +R+A +L LHR+  Y            +L   + E+RRR  WACF +DR  S    RPP+
Sbjct  121  IRLARSLGLHRDPSY-------VSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPL  173

Query  415  GNEKFLQIQLPIKESSFQLEIPGPTEDLEGNVPNPVPDDVGQLSNAKDNMGVSAYIIRAV  474
             ++  + + LP             + D                S    ++    ++I+  
Sbjct  174  LSDSDIDLPLP---CDDDDLWESDSADEVTLPLI---------SLESKSIKPPLFLIKLS  221

Query  475  VIWGRIVDYLNLGGKKRDPHPLWSPESGYMKLKRQIED  512
             I  +I+  L       D   L    S   +L+R +++
Sbjct  222  KILSKILGSLLSIRSTLDQRDLQLKLSWVRELERALDN  259


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 63.5 bits (155),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 15/37 (41%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  96   ACIACRRKKIRCSGEKPACKHCSRSRIPCVYKVTTRK  132
            AC  CR++K++C G+KPAC  C ++ + C Y   ++K
Sbjct  2    ACDNCRKRKVKCDGKKPACSRCIKNGLECTYSRKSKK  38



Lambda      K        H        a         alpha
   0.317    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1209158104


Query= TCONS_00001020

Length=224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366796 pfam01758, SBF, Sodium Bile acid symporter family. Thi...  75.0    3e-17


>CDD:366796 pfam01758, SBF, Sodium Bile acid symporter family.  This family 
consists of Na+/bile acid co-transporters. These transmembrane 
proteins function in the liver in the uptake of bile acids 
from portal blood plasma a process mediated by the co-transport 
of Na+. Also in the family is ARC3 from S. cerevisiae 
- this is a putative transmembrane protein involved in resistance 
to arsenic compounds.
Length=191

 Score = 75.0 bits (185),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 39/120 (33%), Positives = 67/120 (56%), Gaps = 6/120 (5%)

Query  8    VLVWTGLAGGDGEYCAILVAINSILQMVLFAPLAIFFIRVIGDGDDGLTIEYSLAAKSVG  67
              VWT LA GD E   ++VA++++L ++    L      ++ +G   L +     AKSV 
Sbjct  78   SNVWTYLAKGDVELSVVMVALSTLLAILFTPLLLYLLAGLLVEGTT-LPVPIEEIAKSVL  136

Query  68   VFLGIPLGAAIVTRFGLRFLISDEWYNRTFVKLISPLSLIGLLFTILVLFASQGRQVVHQ  127
            +++ IPL A I+TR+ L      + +    +  + P+SLIGLL TI+V+F+ +G  +V +
Sbjct  137  IYVIIPLIAGILTRYFLP-----KHFESRILPAVPPISLIGLLLTIVVIFSLKGELIVSR  191



Lambda      K        H        a         alpha
   0.331    0.143    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00006938

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00006939

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00006940

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00006941

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00006942

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00001022

Length=810
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  189     8e-56
CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  128     4e-33
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  92.5    2e-23


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 189 bits (482),  Expect = 8e-56, Method: Composition-based stats.
 Identities = 84/248 (34%), Positives = 115/248 (46%), Gaps = 45/248 (18%)

Query  348  TVLLKNT-GALPLTGKEVKVGVLGEDAGSNPWGANGCPDRGCDNGTLAMAWGSGTANFPY  406
             VLLKN  G LPL  K  K+ V+G +A   P                    GSGT N PY
Sbjct  1    IVLLKNENGLLPLPKKAKKIAVIGPNADDPP----------------NGGGGSGTGNPPY  44

Query  407  LVTPEQAIQREV---------ISNGGNVFAVTDNGALSQMADVASQSSVSLVFVNAD---  454
            LVTP   I+            ++   +     D+  +++    A  + V++VFV  D   
Sbjct  45   LVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPET  104

Query  455  SGEGFISVDGNEGDRKNLTLWKNGEAVIDTVVSHCNNTIVVIHSVGPVLIDRWYDNPNVT  514
             GEG+        DR +L L  N +A+I  V +    T+VV+HS GPV ++ W    NV 
Sbjct  105  EGEGY--------DRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWA-EENVD  155

Query  515  AIIWAGLPGQESGNSLVDVLYGRVNPSAKTPFTWGKTRESYGAPLLTEPNNGNGAPQDDF  574
            AI+ A  PGQE GN++ DVL+G VNPS K P T+ K+ E         P  G     D +
Sbjct  156  AILAAWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDL-------PAEGGPLLPDLY  208

Query  575  NEGVFIDY  582
             EG  + Y
Sbjct  209  PEGYGLSY  216


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 128 bits (323),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 69/259 (27%), Positives = 107/259 (41%), Gaps = 33/259 (13%)

Query  43   LGIRFSDLNSAFPAGTNVAATWDKTLAYLRGKAMGEEFNDKGVDILLGPAAGPLGKYPDG  102
               RF +  + FP+   +AAT D  LA   G AM  E    G+D    P    + + P  
Sbjct  78   RVQRFGEG-TMFPSAIALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVD-VARDPRW  135

Query  103  GRIWEGFSPDPALTGVLFAETIKGIQDAGVIATAKHYILNEQEHFRQVGEAQGYGYNITE  162
            G     FS DP L   L    I+G+Q AGV+AT KH+      H     ++       T 
Sbjct  136  GIGERSFSEDPQLVSALAGAMIEGLQGAGVLATVKHFPG----HGHGATDS-HKETPTT-  189

Query  163  TISSNVDDKTMHELYLWPFADAVRAGVGAVMCS---YNQINNSYGCQNSQTLNKLLKAEL  219
                   ++ +  + L PF  A+ AGV AVM +   Y+ ++ +    +   L  +L+ + 
Sbjct  190  ----PRPEQRLRTVDLLPFQAAIEAGVDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKW  245

Query  220  GFQGFVMSDWSA------HHSGVGAAL----AGLDMSMPGDISFDDGLSFWGTNLTVSVL  269
            GF G V+SD  +      H     A      AG+D+++  +             L   V 
Sbjct  246  GFDGIVVSDDLSMKGIADHGGPAEAVRRALEAGVDIALVPE-------ERTK-YLKKVVK  297

Query  270  NGTVPAWRVDDMAVRIMTA  288
            NG +P  R+D    R++  
Sbjct  298  NGKLPMARIDAAVRRVLRL  316


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 92.5 bits (231),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 32/70 (46%), Positives = 41/70 (59%), Gaps = 2/70 (3%)

Query  730  VPQLYVSL--GGPNEPRVVLRKFDRIFLAPGEQKVWTTTLNRRDLANWDVEAQDWVITKY  787
            V QLYV         P   L+ F+++ LAPGE K  T TL+RRDL+ WD + Q WV+   
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  788  PKKVHVGSSS  797
              +V VGSSS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1041888832


Query= TCONS_00006943

Length=810
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  189     8e-56
CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  128     4e-33
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  92.5    2e-23


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 189 bits (482),  Expect = 8e-56, Method: Composition-based stats.
 Identities = 84/248 (34%), Positives = 115/248 (46%), Gaps = 45/248 (18%)

Query  348  TVLLKNT-GALPLTGKEVKVGVLGEDAGSNPWGANGCPDRGCDNGTLAMAWGSGTANFPY  406
             VLLKN  G LPL  K  K+ V+G +A   P                    GSGT N PY
Sbjct  1    IVLLKNENGLLPLPKKAKKIAVIGPNADDPP----------------NGGGGSGTGNPPY  44

Query  407  LVTPEQAIQREV---------ISNGGNVFAVTDNGALSQMADVASQSSVSLVFVNAD---  454
            LVTP   I+            ++   +     D+  +++    A  + V++VFV  D   
Sbjct  45   LVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPET  104

Query  455  SGEGFISVDGNEGDRKNLTLWKNGEAVIDTVVSHCNNTIVVIHSVGPVLIDRWYDNPNVT  514
             GEG+        DR +L L  N +A+I  V +    T+VV+HS GPV ++ W    NV 
Sbjct  105  EGEGY--------DRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWA-EENVD  155

Query  515  AIIWAGLPGQESGNSLVDVLYGRVNPSAKTPFTWGKTRESYGAPLLTEPNNGNGAPQDDF  574
            AI+ A  PGQE GN++ DVL+G VNPS K P T+ K+ E         P  G     D +
Sbjct  156  AILAAWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDL-------PAEGGPLLPDLY  208

Query  575  NEGVFIDY  582
             EG  + Y
Sbjct  209  PEGYGLSY  216


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 128 bits (323),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 69/259 (27%), Positives = 107/259 (41%), Gaps = 33/259 (13%)

Query  43   LGIRFSDLNSAFPAGTNVAATWDKTLAYLRGKAMGEEFNDKGVDILLGPAAGPLGKYPDG  102
               RF +  + FP+   +AAT D  LA   G AM  E    G+D    P    + + P  
Sbjct  78   RVQRFGEG-TMFPSAIALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVD-VARDPRW  135

Query  103  GRIWEGFSPDPALTGVLFAETIKGIQDAGVIATAKHYILNEQEHFRQVGEAQGYGYNITE  162
            G     FS DP L   L    I+G+Q AGV+AT KH+      H     ++       T 
Sbjct  136  GIGERSFSEDPQLVSALAGAMIEGLQGAGVLATVKHFPG----HGHGATDS-HKETPTT-  189

Query  163  TISSNVDDKTMHELYLWPFADAVRAGVGAVMCS---YNQINNSYGCQNSQTLNKLLKAEL  219
                   ++ +  + L PF  A+ AGV AVM +   Y+ ++ +    +   L  +L+ + 
Sbjct  190  ----PRPEQRLRTVDLLPFQAAIEAGVDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKW  245

Query  220  GFQGFVMSDWSA------HHSGVGAAL----AGLDMSMPGDISFDDGLSFWGTNLTVSVL  269
            GF G V+SD  +      H     A      AG+D+++  +             L   V 
Sbjct  246  GFDGIVVSDDLSMKGIADHGGPAEAVRRALEAGVDIALVPE-------ERTK-YLKKVVK  297

Query  270  NGTVPAWRVDDMAVRIMTA  288
            NG +P  R+D    R++  
Sbjct  298  NGKLPMARIDAAVRRVLRL  316


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 92.5 bits (231),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 32/70 (46%), Positives = 41/70 (59%), Gaps = 2/70 (3%)

Query  730  VPQLYVSL--GGPNEPRVVLRKFDRIFLAPGEQKVWTTTLNRRDLANWDVEAQDWVITKY  787
            V QLYV         P   L+ F+++ LAPGE K  T TL+RRDL+ WD + Q WV+   
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  788  PKKVHVGSSS  797
              +V VGSSS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 1041888832


Query= TCONS_00001026

Length=863
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  189     1e-55
CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  127     7e-33
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  92.1    2e-23


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 189 bits (482),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 84/248 (34%), Positives = 115/248 (46%), Gaps = 45/248 (18%)

Query  401  TVLLKNT-GALPLTGKEVKVGVLGEDAGSNPWGANGCPDRGCDNGTLAMAWGSGTANFPY  459
             VLLKN  G LPL  K  K+ V+G +A   P                    GSGT N PY
Sbjct  1    IVLLKNENGLLPLPKKAKKIAVIGPNADDPP----------------NGGGGSGTGNPPY  44

Query  460  LVTPEQAIQREV---------ISNGGNVFAVTDNGALSQMADVASQSSVSLVFVNAD---  507
            LVTP   I+            ++   +     D+  +++    A  + V++VFV  D   
Sbjct  45   LVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPET  104

Query  508  SGEGFISVDGNEGDRKNLTLWKNGEAVIDTVVSHCNNTIVVIHSVGPVLIDRWYDNPNVT  567
             GEG+        DR +L L  N +A+I  V +    T+VV+HS GPV ++ W    NV 
Sbjct  105  EGEGY--------DRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWA-EENVD  155

Query  568  AIIWAGLPGQESGNSLVDVLYGRVNPSAKTPFTWGKTRESYGAPLLTEPNNGNGAPQDDF  627
            AI+ A  PGQE GN++ DVL+G VNPS K P T+ K+ E         P  G     D +
Sbjct  156  AILAAWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDL-------PAEGGPLLPDLY  208

Query  628  NEGVFIDY  635
             EG  + Y
Sbjct  209  PEGYGLSY  216


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 127 bits (322),  Expect = 7e-33, Method: Composition-based stats.
 Identities = 69/259 (27%), Positives = 107/259 (41%), Gaps = 33/259 (13%)

Query  96   LGIRFSDLNSAFPAGTNVAATWDKTLAYLRGKAMGEEFNDKGVDILLGPAAGPLGKYPDG  155
               RF +  + FP+   +AAT D  LA   G AM  E    G+D    P    + + P  
Sbjct  78   RVQRFGEG-TMFPSAIALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVD-VARDPRW  135

Query  156  GRIWEGFSPDPALTGVLFAETIKGIQDAGVIATAKHYILNEQEHFRQVGEAQGYGYNITE  215
            G     FS DP L   L    I+G+Q AGV+AT KH+      H     ++       T 
Sbjct  136  GIGERSFSEDPQLVSALAGAMIEGLQGAGVLATVKHFPG----HGHGATDS-HKETPTT-  189

Query  216  TISSNVDDKTMHELYLWPFADAVRAGVGAVMCS---YNQINNSYGCQNSQTLNKLLKAEL  272
                   ++ +  + L PF  A+ AGV AVM +   Y+ ++ +    +   L  +L+ + 
Sbjct  190  ----PRPEQRLRTVDLLPFQAAIEAGVDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKW  245

Query  273  GFQGFVMSDWSA------HHSGVGAAL----AGLDMSMPGDISFDDGLSFWGTNLTVSVL  322
            GF G V+SD  +      H     A      AG+D+++  +             L   V 
Sbjct  246  GFDGIVVSDDLSMKGIADHGGPAEAVRRALEAGVDIALVPE-------ERTK-YLKKVVK  297

Query  323  NGTVPAWRVDDMAVRIMTA  341
            NG +P  R+D    R++  
Sbjct  298  NGKLPMARIDAAVRRVLRL  316


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 92.1 bits (230),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 32/70 (46%), Positives = 41/70 (59%), Gaps = 2/70 (3%)

Query  783  VPQLYVSL--GGPNEPRVVLRKFDRIFLAPGEQKVWTTTLNRRDLANWDVEAQDWVITKY  840
            V QLYV         P   L+ F+++ LAPGE K  T TL+RRDL+ WD + Q WV+   
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  841  PKKVHVGSSS  850
              +V VGSSS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1102474752


Query= TCONS_00001023

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  115     1e-30


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 115 bits (291),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 61/219 (28%), Positives = 94/219 (43%), Gaps = 25/219 (11%)

Query  96   LGIRFSDLNSAFPAGTNVAATWDKTLAYLRGKAMGEEFNDKGVDILLGPAAGPLGKYPDG  155
               RF +  + FP+   +AAT D  LA   G AM  E    G+D    P    + + P  
Sbjct  78   RVQRFGEG-TMFPSAIALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVD-VARDPRW  135

Query  156  GRIWEGFSPDPALTGVLFAETIKGIQDAGVIATAKHYILNEQEHFRQVGEAQGYGYNITE  215
            G     FS DP L   L    I+G+Q AGV+AT KH+      H     ++       T 
Sbjct  136  GIGERSFSEDPQLVSALAGAMIEGLQGAGVLATVKHFPG----HGHGATDS-HKETPTT-  189

Query  216  TISSNVDDKTMHELYLWPFADAVRAGVGAVMCS---YNQINNSYGCQNSQTLNKLLKAEL  272
                   ++ +  + L PF  A+ AGV AVM +   Y+ ++ +    +   L  +L+ + 
Sbjct  190  ----PRPEQRLRTVDLLPFQAAIEAGVDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKW  245

Query  273  GFQGFVMSDWSA------HHSGVGAAL----AGLDMSMP  301
            GF G V+SD  +      H     A      AG+D+++ 
Sbjct  246  GFDGIVVSDDLSMKGIADHGGPAEAVRRALEAGVDIALV  284



Lambda      K        H        a         alpha
   0.317    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00001024

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  189     5e-57
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  92.1    2e-23


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 189 bits (483),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 84/248 (34%), Positives = 115/248 (46%), Gaps = 45/248 (18%)

Query  156  TVLLKNT-GALPLTGKEVKVGVLGEDAGSNPWGANGCPDRGCDNGTLAMAWGSGTANFPY  214
             VLLKN  G LPL  K  K+ V+G +A   P                    GSGT N PY
Sbjct  1    IVLLKNENGLLPLPKKAKKIAVIGPNADDPP----------------NGGGGSGTGNPPY  44

Query  215  LVTPEQAIQREV---------ISNGGNVFAVTDNGALSQMADVASQSSVSLVFVNAD---  262
            LVTP   I+            ++   +     D+  +++    A  + V++VFV  D   
Sbjct  45   LVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPET  104

Query  263  SGEGFISVDGNEGDRKNLTLWKNGEAVIDTVVSHCNNTIVVIHSVGPVLIDRWYDNPNVT  322
             GEG+        DR +L L  N +A+I  V +    T+VV+HS GPV ++ W    NV 
Sbjct  105  EGEGY--------DRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWA-EENVD  155

Query  323  AIIWAGLPGQESGNSLVDVLYGRVNPSAKTPFTWGKTRESYGAPLLTEPNNGNGAPQDDF  382
            AI+ A  PGQE GN++ DVL+G VNPS K P T+ K+ E         P  G     D +
Sbjct  156  AILAAWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDL-------PAEGGPLLPDLY  208

Query  383  NEGVFIDY  390
             EG  + Y
Sbjct  209  PEGYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 92.1 bits (230),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 32/70 (46%), Positives = 41/70 (59%), Gaps = 2/70 (3%)

Query  538  VPQLYVSL--GGPNEPRVVLRKFDRIFLAPGEQKVWTTTLNRRDLANWDVEAQDWVITKY  595
            V QLYV         P   L+ F+++ LAPGE K  T TL+RRDL+ WD + Q WV+   
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  596  PKKVHVGSSS  605
              +V VGSSS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 786069128


Query= TCONS_00001025

Length=611
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  190     3e-57
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  92.1    2e-23


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 190 bits (484),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 84/248 (34%), Positives = 115/248 (46%), Gaps = 45/248 (18%)

Query  156  TVLLKNT-GALPLTGKEVKVGVLGEDAGSNPWGANGCPDRGCDNGTLAMAWGSGTANFPY  214
             VLLKN  G LPL  K  K+ V+G +A   P                    GSGT N PY
Sbjct  1    IVLLKNENGLLPLPKKAKKIAVIGPNADDPP----------------NGGGGSGTGNPPY  44

Query  215  LVTPEQAIQREV---------ISNGGNVFAVTDNGALSQMADVASQSSVSLVFVNAD---  262
            LVTP   I+            ++   +     D+  +++    A  + V++VFV  D   
Sbjct  45   LVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPET  104

Query  263  SGEGFISVDGNEGDRKNLTLWKNGEAVIDTVVSHCNNTIVVIHSVGPVLIDRWYDNPNVT  322
             GEG+        DR +L L  N +A+I  V +    T+VV+HS GPV ++ W    NV 
Sbjct  105  EGEGY--------DRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWA-EENVD  155

Query  323  AIIWAGLPGQESGNSLVDVLYGRVNPSAKTPFTWGKTRESYGAPLLTEPNNGNGAPQDDF  382
            AI+ A  PGQE GN++ DVL+G VNPS K P T+ K+ E         P  G     D +
Sbjct  156  AILAAWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDL-------PAEGGPLLPDLY  208

Query  383  NEGVFIDY  390
             EG  + Y
Sbjct  209  PEGYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 92.1 bits (230),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 32/70 (46%), Positives = 41/70 (59%), Gaps = 2/70 (3%)

Query  538  VPQLYVSL--GGPNEPRVVLRKFDRIFLAPGEQKVWTTTLNRRDLANWDVEAQDWVITKY  595
            V QLYV         P   L+ F+++ LAPGE K  T TL+RRDL+ WD + Q WV+   
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  596  PKKVHVGSSS  605
              +V VGSSS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 775608132


Query= TCONS_00006944

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  180     2e-55
CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  64.0    8e-12


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 180 bits (459),  Expect = 2e-55, Method: Composition-based stats.
 Identities = 83/243 (34%), Positives = 113/243 (47%), Gaps = 45/243 (19%)

Query  182  TVLLKNT-GALPLTGKEVKVGVLGEDAGSNPWGANGCPDRGCDNGTLAMAWGSGTANFPY  240
             VLLKN  G LPL  K  K+ V+G +A   P                    GSGT N PY
Sbjct  1    IVLLKNENGLLPLPKKAKKIAVIGPNADDPP----------------NGGGGSGTGNPPY  44

Query  241  LVTPEQAIQREV---------ISNGGNVFAVTDNGALSQMADVASQSSVSLVFVNAD---  288
            LVTP   I+            ++   +     D+  +++    A  + V++VFV  D   
Sbjct  45   LVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPET  104

Query  289  SGEGFISVDGNEGDRKNLTLWKNGEAVIDTVVSHCNNTIVVIHSVGPVLIDRWYDNPNVT  348
             GEG+        DR +L L  N +A+I  V +    T+VV+HS GPV ++ W    NV 
Sbjct  105  EGEGY--------DRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWA-EENVD  155

Query  349  AIIWAGLPGQESGNSLVDVLYGRVNPSAKTPFTWGKTRESYGAPLLTEPNNGNGAPQDDF  408
            AI+ A  PGQE GN++ DVL+G VNPS K P T+ K+ E         P  G     D +
Sbjct  156  AILAAWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDL-------PAEGGPLLPDLY  208

Query  409  NEG  411
             EG
Sbjct  209  PEG  211


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 64.0 bits (156),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 33/134 (25%), Positives = 56/134 (42%), Gaps = 21/134 (16%)

Query  2    RTLIDLTDLECRPFADAVRAGVGAVMCS---YNQINNSYGCQNSQTLNKLLKAELGFQGF  58
            R    L  ++  PF  A+ AGV AVM +   Y+ ++ +    +   L  +L+ + GF G 
Sbjct  191  RPEQRLRTVDLLPFQAAIEAGVDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKWGFDGI  250

Query  59   VMSDWSA------HHSGVGAAL----AGLDMSMPGDISFDDGLSFWGTNLTVSVLNGTVP  108
            V+SD  +      H     A      AG+D+++  +             L   V NG +P
Sbjct  251  VVSDDLSMKGIADHGGPAEAVRRALEAGVDIALVPE-------ERTK-YLKKVVKNGKLP  302

Query  109  AWRVDDMAVRIMTA  122
              R+D    R++  
Sbjct  303  MARIDAAVRRVLRL  316



Lambda      K        H        a         alpha
   0.316    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500176124


Query= TCONS_00006945

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  125     8e-33


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 125 bits (316),  Expect = 8e-33, Method: Composition-based stats.
 Identities = 69/259 (27%), Positives = 107/259 (41%), Gaps = 33/259 (13%)

Query  96   LGIRFSDLNSAFPAGTNVAATWDKTLAYLRGKAMGEEFNDKGVDILLGPAAGPLGKYPDG  155
               RF +  + FP+   +AAT D  LA   G AM  E    G+D    P    + + P  
Sbjct  78   RVQRFGEG-TMFPSAIALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVD-VARDPRW  135

Query  156  GRIWEGFSPDPALTGVLFAETIKGIQDAGVIATAKHYILNEQEHFRQVGEAQGYGYNITE  215
            G     FS DP L   L    I+G+Q AGV+AT KH+      H     ++       T 
Sbjct  136  GIGERSFSEDPQLVSALAGAMIEGLQGAGVLATVKHFPG----HGHGATDS-HKETPTT-  189

Query  216  TISSNVDDKTMHELYLWPFADAVRAGVGAVMCS---YNQINNSYGCQNSQTLNKLLKAEL  272
                   ++ +  + L PF  A+ AGV AVM +   Y+ ++ +    +   L  +L+ + 
Sbjct  190  ----PRPEQRLRTVDLLPFQAAIEAGVDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKW  245

Query  273  GFQGFVMSDWSA------HHSGVGAAL----AGLDMSMPGDISFDDGLSFWGTNLTVSVL  322
            GF G V+SD  +      H     A      AG+D+++  +             L   V 
Sbjct  246  GFDGIVVSDDLSMKGIADHGGPAEAVRRALEAGVDIALVPE-------ERTK-YLKKVVK  297

Query  323  NGTVPAWRVDDMAVRIMTA  341
            NG +P  R+D    R++  
Sbjct  298  NGKLPMARIDAAVRRVLRL  316



Lambda      K        H        a         alpha
   0.317    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00006946

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  109     1e-27


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 109 bits (273),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 32/226 (14%)

Query  1    MGEEFNDKGVDILLGPAAGPLGKYPDGGRIWEGFSPDPALTGVLFAETIKGIQDAGVIAT  60
            M  E    G+D    P    + + P  G     FS DP L   L    I+G+Q AGV+AT
Sbjct  110  MAREMRALGIDWDFAPVVD-VARDPRWGIGERSFSEDPQLVSALAGAMIEGLQGAGVLAT  168

Query  61   AKHYILNEQEHFRQVGEAQGYGYNITETISSNVDDKTMHELYLWPFADAVRAGVGAVMCS  120
             KH+      H     ++       T        ++ +  + L PF  A+ AGV AVM +
Sbjct  169  VKHFPG----HGHGATDS-HKETPTT-----PRPEQRLRTVDLLPFQAAIEAGVDAVMAA  218

Query  121  ---YNQINNSYGCQNSQTLNKLLKAELGFQGFVMSDWSA------HHSGVGAAL----AG  167
               Y+ ++ +    +   L  +L+ + GF G V+SD  +      H     A      AG
Sbjct  219  HVIYSSLDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMKGIADHGGPAEAVRRALEAG  278

Query  168  LDMSMPGDISFDDGLSFWGTNLTVSVLNGTVPAWRVDDMAVRIMTA  213
            +D+++  +             L   V NG +P  R+D    R++  
Sbjct  279  VDIALVPE-------ERTK-YLKKVVKNGKLPMARIDAAVRRVLRL  316



Lambda      K        H        a         alpha
   0.316    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00006947

Length=253


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00001028

Length=873
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  189     1e-55
CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  127     7e-33
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  92.5    2e-23


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 189 bits (482),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 84/248 (34%), Positives = 115/248 (46%), Gaps = 45/248 (18%)

Query  411  TVLLKNT-GALPLTGKEVKVGVLGEDAGSNPWGANGCPDRGCDNGTLAMAWGSGTANFPY  469
             VLLKN  G LPL  K  K+ V+G +A   P                    GSGT N PY
Sbjct  1    IVLLKNENGLLPLPKKAKKIAVIGPNADDPP----------------NGGGGSGTGNPPY  44

Query  470  LVTPEQAIQREV---------ISNGGNVFAVTDNGALSQMADVASQSSVSLVFVNAD---  517
            LVTP   I+            ++   +     D+  +++    A  + V++VFV  D   
Sbjct  45   LVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPET  104

Query  518  SGEGFISVDGNEGDRKNLTLWKNGEAVIDTVVSHCNNTIVVIHSVGPVLIDRWYDNPNVT  577
             GEG+        DR +L L  N +A+I  V +    T+VV+HS GPV ++ W    NV 
Sbjct  105  EGEGY--------DRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWA-EENVD  155

Query  578  AIIWAGLPGQESGNSLVDVLYGRVNPSAKTPFTWGKTRESYGAPLLTEPNNGNGAPQDDF  637
            AI+ A  PGQE GN++ DVL+G VNPS K P T+ K+ E         P  G     D +
Sbjct  156  AILAAWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDL-------PAEGGPLLPDLY  208

Query  638  NEGVFIDY  645
             EG  + Y
Sbjct  209  PEGYGLSY  216


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 127 bits (322),  Expect = 7e-33, Method: Composition-based stats.
 Identities = 69/259 (27%), Positives = 107/259 (41%), Gaps = 33/259 (13%)

Query  106  LGIRFSDLNSAFPAGTNVAATWDKTLAYLRGKAMGEEFNDKGVDILLGPAAGPLGKYPDG  165
               RF +  + FP+   +AAT D  LA   G AM  E    G+D    P    + + P  
Sbjct  78   RVQRFGEG-TMFPSAIALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVD-VARDPRW  135

Query  166  GRIWEGFSPDPALTGVLFAETIKGIQDAGVIATAKHYILNEQEHFRQVGEAQGYGYNITE  225
            G     FS DP L   L    I+G+Q AGV+AT KH+      H     ++       T 
Sbjct  136  GIGERSFSEDPQLVSALAGAMIEGLQGAGVLATVKHFPG----HGHGATDS-HKETPTT-  189

Query  226  TISSNVDDKTMHELYLWPFADAVRAGVGAVMCS---YNQINNSYGCQNSQTLNKLLKAEL  282
                   ++ +  + L PF  A+ AGV AVM +   Y+ ++ +    +   L  +L+ + 
Sbjct  190  ----PRPEQRLRTVDLLPFQAAIEAGVDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKW  245

Query  283  GFQGFVMSDWSA------HHSGVGAAL----AGLDMSMPGDISFDDGLSFWGTNLTVSVL  332
            GF G V+SD  +      H     A      AG+D+++  +             L   V 
Sbjct  246  GFDGIVVSDDLSMKGIADHGGPAEAVRRALEAGVDIALVPE-------ERTK-YLKKVVK  297

Query  333  NGTVPAWRVDDMAVRIMTA  351
            NG +P  R+D    R++  
Sbjct  298  NGKLPMARIDAAVRRVLRL  316


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 92.5 bits (231),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 32/70 (46%), Positives = 41/70 (59%), Gaps = 2/70 (3%)

Query  793  VPQLYVSL--GGPNEPRVVLRKFDRIFLAPGEQKVWTTTLNRRDLANWDVEAQDWVITKY  850
            V QLYV         P   L+ F+++ LAPGE K  T TL+RRDL+ WD + Q WV+   
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  851  PKKVHVGSSS  860
              +V VGSSS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1116829892


Query= TCONS_00006948

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  189     5e-57
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  92.1    2e-23


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 189 bits (483),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 84/248 (34%), Positives = 115/248 (46%), Gaps = 45/248 (18%)

Query  156  TVLLKNT-GALPLTGKEVKVGVLGEDAGSNPWGANGCPDRGCDNGTLAMAWGSGTANFPY  214
             VLLKN  G LPL  K  K+ V+G +A   P                    GSGT N PY
Sbjct  1    IVLLKNENGLLPLPKKAKKIAVIGPNADDPP----------------NGGGGSGTGNPPY  44

Query  215  LVTPEQAIQREV---------ISNGGNVFAVTDNGALSQMADVASQSSVSLVFVNAD---  262
            LVTP   I+            ++   +     D+  +++    A  + V++VFV  D   
Sbjct  45   LVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPET  104

Query  263  SGEGFISVDGNEGDRKNLTLWKNGEAVIDTVVSHCNNTIVVIHSVGPVLIDRWYDNPNVT  322
             GEG+        DR +L L  N +A+I  V +    T+VV+HS GPV ++ W    NV 
Sbjct  105  EGEGY--------DRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWA-EENVD  155

Query  323  AIIWAGLPGQESGNSLVDVLYGRVNPSAKTPFTWGKTRESYGAPLLTEPNNGNGAPQDDF  382
            AI+ A  PGQE GN++ DVL+G VNPS K P T+ K+ E         P  G     D +
Sbjct  156  AILAAWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDL-------PAEGGPLLPDLY  208

Query  383  NEGVFIDY  390
             EG  + Y
Sbjct  209  PEGYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 92.1 bits (230),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 32/70 (46%), Positives = 41/70 (59%), Gaps = 2/70 (3%)

Query  538  VPQLYVSL--GGPNEPRVVLRKFDRIFLAPGEQKVWTTTLNRRDLANWDVEAQDWVITKY  595
            V QLYV         P   L+ F+++ LAPGE K  T TL+RRDL+ WD + Q WV+   
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  596  PKKVHVGSSS  605
              +V VGSSS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 786069128


Query= TCONS_00001029

Length=220


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00001031

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00001032

Length=503
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  162     2e-47
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            121     8e-32


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 162 bits (412),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 75/269 (28%), Positives = 109/269 (41%), Gaps = 56/269 (21%)

Query  214  LGSLGEGAGGAVTRCKLKDGKTVFALKIITTDPNPDVK-KQIVRELNFNKDCASEHICRY  272
            L  LG G+ G V + K +D   + A+K I  +     K K I+RE+   K     +I R 
Sbjct  4    LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  273  YGAFMDKSTGTISIAMEFCEGGSLDSIYKEVKKLGGRTGEKVLGKIAEGVLNGLTYLHSR  332
            Y AF DK    + + +E+ EGGSL  +  E         E+    I + +L GL      
Sbjct  64   YDAFEDKDN--LYLVLEYVEGGSLFDLLSEKGAFS----EREAKFIMKQILEGL------  111

Query  333  KIIHRDIKPSNILLCRNGQVKLCDFGVSGEFGTKGDANTFIGTSYYMAPERITGQSYTIT  392
                            +G                    TF+GT +YMAPE + G  Y   
Sbjct  112  ---------------ESG----------------SSLTTFVGTPWYMAPEVLGGNPYGPK  140

Query  393  SDVWSLGVTLLEVAQHRFPFPADGTEMQPRAGLIDLLTYIVRQPIPKLKDEPENRIRWSD  452
             DVWSLG  L E+   + PFP             ++   I+ QP       PE     S+
Sbjct  141  VDVWSLGCILYELLTGKPPFPGING--------NEIYELIIDQPY----AFPELPSNLSE  188

Query  453  NFKYFIECCLEKEPPRRATPWRMLEHPWM  481
              K  ++  L+K+P +R T  + L+HPW 
Sbjct  189  EAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 121 bits (305),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 57/199 (29%), Positives = 89/199 (45%), Gaps = 18/199 (9%)

Query  217  LGEGAGGAVTRCKLK----DGKTVFALKIITTDPNPDVKKQIVRELNFNKDCASEHICRY  272
            LGEGA G V +  LK    + K   A+K +    + + ++  + E +  K     +I + 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKLDHPNIVKL  66

Query  273  YGAFMDKSTGTISIAMEFCEGGSLDSIYKEVKKLGGRTGEKVLGKIAEGVLNGLTYLHSR  332
             G         + I  E+  GG L      ++K   +   K L  +A  +  G+ YL S+
Sbjct  67   LGVCTQ--GEPLYIVTEYMPGGDLLDF---LRKHKRKLTLKDLLSMALQIAKGMEYLESK  121

Query  333  KIIHRDIKPSNILLCRNGQVKLCDFGVS------GEFGTKGDANTFIGTSYYMAPERITG  386
              +HRD+   N L+  N  VK+ DFG+S        +  +G     I    +MAPE +  
Sbjct  122  NFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPI---KWMAPESLKD  178

Query  387  QSYTITSDVWSLGVTLLEV  405
              +T  SDVWS GV L E+
Sbjct  179  GKFTSKSDVWSFGVLLWEI  197



Lambda      K        H        a         alpha
   0.315    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 623795192


Query= TCONS_00006949

Length=503
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  162     2e-47
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            121     8e-32


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 162 bits (412),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 75/269 (28%), Positives = 109/269 (41%), Gaps = 56/269 (21%)

Query  214  LGSLGEGAGGAVTRCKLKDGKTVFALKIITTDPNPDVK-KQIVRELNFNKDCASEHICRY  272
            L  LG G+ G V + K +D   + A+K I  +     K K I+RE+   K     +I R 
Sbjct  4    LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  273  YGAFMDKSTGTISIAMEFCEGGSLDSIYKEVKKLGGRTGEKVLGKIAEGVLNGLTYLHSR  332
            Y AF DK    + + +E+ EGGSL  +  E         E+    I + +L GL      
Sbjct  64   YDAFEDKDN--LYLVLEYVEGGSLFDLLSEKGAFS----EREAKFIMKQILEGL------  111

Query  333  KIIHRDIKPSNILLCRNGQVKLCDFGVSGEFGTKGDANTFIGTSYYMAPERITGQSYTIT  392
                            +G                    TF+GT +YMAPE + G  Y   
Sbjct  112  ---------------ESG----------------SSLTTFVGTPWYMAPEVLGGNPYGPK  140

Query  393  SDVWSLGVTLLEVAQHRFPFPADGTEMQPRAGLIDLLTYIVRQPIPKLKDEPENRIRWSD  452
             DVWSLG  L E+   + PFP             ++   I+ QP       PE     S+
Sbjct  141  VDVWSLGCILYELLTGKPPFPGING--------NEIYELIIDQPY----AFPELPSNLSE  188

Query  453  NFKYFIECCLEKEPPRRATPWRMLEHPWM  481
              K  ++  L+K+P +R T  + L+HPW 
Sbjct  189  EAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 121 bits (305),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 57/199 (29%), Positives = 89/199 (45%), Gaps = 18/199 (9%)

Query  217  LGEGAGGAVTRCKLK----DGKTVFALKIITTDPNPDVKKQIVRELNFNKDCASEHICRY  272
            LGEGA G V +  LK    + K   A+K +    + + ++  + E +  K     +I + 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKLDHPNIVKL  66

Query  273  YGAFMDKSTGTISIAMEFCEGGSLDSIYKEVKKLGGRTGEKVLGKIAEGVLNGLTYLHSR  332
             G         + I  E+  GG L      ++K   +   K L  +A  +  G+ YL S+
Sbjct  67   LGVCTQ--GEPLYIVTEYMPGGDLLDF---LRKHKRKLTLKDLLSMALQIAKGMEYLESK  121

Query  333  KIIHRDIKPSNILLCRNGQVKLCDFGVS------GEFGTKGDANTFIGTSYYMAPERITG  386
              +HRD+   N L+  N  VK+ DFG+S        +  +G     I    +MAPE +  
Sbjct  122  NFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPI---KWMAPESLKD  178

Query  387  QSYTITSDVWSLGVTLLEV  405
              +T  SDVWS GV L E+
Sbjct  179  GKFTSKSDVWSFGVLLWEI  197



Lambda      K        H        a         alpha
   0.315    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 623795192


Query= TCONS_00001033

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  142     2e-40
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            116     4e-30


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 142 bits (361),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 70/273 (26%), Positives = 102/273 (37%), Gaps = 72/273 (26%)

Query  214  LGSLGEGAGGAVTRCKLKDGKTVFALKIITTDPNPDVK-KQIVRELNFNKDCASEHICRY  272
            L  LG G+ G V + K +D   + A+K I  +     K K I+RE+   K     +I R 
Sbjct  4    LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  273  YGAFMDKSTGTISIAMEFCEGGSLDSIYKEVKKLGGRTGEKVLGKIAEGVLNGLTYLHSR  332
            Y AF DK    + + +E+ EGGSL  +  E         E+    I + +L GL      
Sbjct  64   YDAFEDKDN--LYLVLEYVEGGSLFDLLSEKGAFS----EREAKFIMKQILEGL------  111

Query  333  KIIHRGKLASFRDLCNRLTRSDIKPSNILLCRNGQVKLCDFGVSGEFGTKGDANTFIGTS  392
                                            +G                    TF+GT 
Sbjct  112  -------------------------------ESG----------------SSLTTFVGTP  124

Query  393  YYMAPERITGQSYTITSDVWSLGVTLLEVAQHRFPFPADGTEMQPRAGLIDLLTYIVRQP  452
            +YMAPE + G  Y    DVWSLG  L E+   + PFP             ++   I+ QP
Sbjct  125  WYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGING--------NEIYELIIDQP  176

Query  453  IPKLKDEPENRIRWSDNFKYFIECCLEKEPPRR  485
                   PE     S+  K  ++  L+K+P +R
Sbjct  177  Y----AFPELPSNLSEEAKDLLKKLLKKDPSKR  205


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 116 bits (292),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 90/215 (42%), Gaps = 34/215 (16%)

Query  217  LGEGAGGAVTRCKLK----DGKTVFALKIITTDPNPDVKKQIVRELNFNKDCASEHICRY  272
            LGEGA G V +  LK    + K   A+K +    + + ++  + E +  K     +I + 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKLDHPNIVKL  66

Query  273  YGAFMDKSTGTISIAMEFCEGGSLDSIYKEVKKLGGRTGEKVLGKIAEGVLNGLTYLHSR  332
             G         + I  E+  GG L      ++K   +   K L  +A  +  G+ YL S+
Sbjct  67   LGVCTQ--GEPLYIVTEYMPGGDLLDF---LRKHKRKLTLKDLLSMALQIAKGMEYLESK  121

Query  333  KIIHRGKLASFRDLCNRLTRSDIKPSNILLCRNGQVKLCDFGVS------GEFGTKGDAN  386
              +HR       DL  R         N L+  N  VK+ DFG+S        +  +G   
Sbjct  122  NFVHR-------DLAAR---------NCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGK  165

Query  387  TFIGTSYYMAPERITGQSYTITSDVWSLGVTLLEV  421
              I    +MAPE +    +T  SDVWS GV L E+
Sbjct  166  LPI---KWMAPESLKDGKFTSKSDVWSFGVLLWEI  197



Lambda      K        H        a         alpha
   0.314    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00006950

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            100     1e-26
CDD:459660 pfam00069, Pkinase, Protein kinase domain                  86.1    1e-21


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 100 bits (252),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 41/130 (32%), Positives = 61/130 (47%), Gaps = 12/130 (9%)

Query  6    GTISIAMEFCEGGSLDSIYKEVKKLGGRTGEKVLGKIAEGVLNGLTYLHSRKIIHRDIKP  65
              + I  E+  GG L      ++K   +   K L  +A  +  G+ YL S+  +HRD+  
Sbjct  74   EPLYIVTEYMPGGDLLDF---LRKHKRKLTLKDLLSMALQIAKGMEYLESKNFVHRDLAA  130

Query  66   SNILLCRNGQVKLCDFGVS------GEFGTKGDANTFIGTSYYMAPERITGQSYTITSDV  119
             N L+  N  VK+ DFG+S        +  +G     I    +MAPE +    +T  SDV
Sbjct  131  RNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPI---KWMAPESLKDGKFTSKSDV  187

Query  120  WSLGVTLLEV  129
            WS GV L E+
Sbjct  188  WSFGVLLWEI  197


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 86.1 bits (214),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 42/177 (24%), Positives = 62/177 (35%), Gaps = 53/177 (30%)

Query  8    ISIAMEFCEGGSLDSIYKEVKKLGGRTGEKVLGKIAEGVLNGLTYLHSRKIIHRDIKPSN  67
            + + +E+ EGGSL  +  E         E+    I + +L GL                 
Sbjct  73   LYLVLEYVEGGSLFDLLSEKGAFS----EREAKFIMKQILEGL-----------------  111

Query  68   ILLCRNGQVKLCDFGVSGEFGTKGDANTFIGTSYYMAPERITGQSYTITSDVWSLGVTLL  127
                 +G                    TF+GT +YMAPE + G  Y    DVWSLG  L 
Sbjct  112  ----ESG----------------SSLTTFVGTPWYMAPEVLGGNPYGPKVDVWSLGCILY  151

Query  128  EVAQHRFPFPADGTEMQPRAGLIDLLTYIVRQPIPKLKDEPENRIRWSDNFKYFIEC  184
            E+   + PFP             ++   I+ QP       PE     S+  K  ++ 
Sbjct  152  ELLTGKPPFPGING--------NEIYELIIDQPY----AFPELPSNLSEEAKDLLKK  196



Lambda      K        H        a         alpha
   0.320    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00001034

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            95.6    1e-24
CDD:459660 pfam00069, Pkinase, Protein kinase domain                  80.4    3e-19


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 95.6 bits (239),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 28/146 (19%)

Query  6    GTISIAMEFCEGGSLDSIYKEVKKLGGRTGEKVLGKIAEGVLNGLTYLHSRKIIHRGKLA  65
              + I  E+  GG L      ++K   +   K L  +A  +  G+ YL S+  +HR    
Sbjct  74   EPLYIVTEYMPGGDLLDF---LRKHKRKLTLKDLLSMALQIAKGMEYLESKNFVHR----  126

Query  66   SFRDLCNRLTRSDIKPSNILLCRNGQVKLCDFGVS------GEFGTKGDANTFIGTSYYM  119
               DL  R         N L+  N  VK+ DFG+S        +  +G     I    +M
Sbjct  127  ---DLAAR---------NCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPI---KWM  171

Query  120  APERITGQSYTITSDVWSLGVTLLEV  145
            APE +    +T  SDVWS GV L E+
Sbjct  172  APESLKDGKFTSKSDVWSFGVLLWEI  197


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 80.4 bits (199),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 42/193 (22%), Positives = 62/193 (32%), Gaps = 69/193 (36%)

Query  8    ISIAMEFCEGGSLDSIYKEVKKLGGRTGEKVLGKIAEGVLNGLTYLHSRKIIHRGKLASF  67
            + + +E+ EGGSL  +  E         E+    I + +L GL                 
Sbjct  73   LYLVLEYVEGGSLFDLLSEKGAFS----EREAKFIMKQILEGL-----------------  111

Query  68   RDLCNRLTRSDIKPSNILLCRNGQVKLCDFGVSGEFGTKGDANTFIGTSYYMAPERITGQ  127
                                 +G                    TF+GT +YMAPE + G 
Sbjct  112  --------------------ESG----------------SSLTTFVGTPWYMAPEVLGGN  135

Query  128  SYTITSDVWSLGVTLLEVAQHRFPFPADGTEMQPRAGLIDLLTYIVRQPIPKLKDEPENR  187
             Y    DVWSLG  L E+   + PFP             ++   I+ QP       PE  
Sbjct  136  PYGPKVDVWSLGCILYELLTGKPPFPGING--------NEIYELIIDQPY----AFPELP  183

Query  188  IRWSDNFKYFIEC  200
               S+  K  ++ 
Sbjct  184  SNLSEEAKDLLKK  196



Lambda      K        H        a         alpha
   0.320    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00001035

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  112     2e-31
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            99.5    5e-26


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 112 bits (283),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 51/198 (26%), Positives = 76/198 (38%), Gaps = 53/198 (27%)

Query  8    ISIAMEFCEGGSLDSIYKEVKKLGGRTGEKVLGKIAEGVLNGLTYLHSRKIIHRDIKPSN  67
            + + +E+ EGGSL  +  E         E+    I + +L GL                 
Sbjct  73   LYLVLEYVEGGSLFDLLSEKGAFS----EREAKFIMKQILEGL-----------------  111

Query  68   ILLCRNGQVKLCDFGVSGEFGTKGDANTFIGTSYYMAPERITGQSYTITSDVWSLGVTLL  127
                 +G                    TF+GT +YMAPE + G  Y    DVWSLG  L 
Sbjct  112  ----ESG----------------SSLTTFVGTPWYMAPEVLGGNPYGPKVDVWSLGCILY  151

Query  128  EVAQHRFPFPADGTEMQPRAGLIDLLTYIVRQPIPKLKDEPENRIRWSDNFKYFIECCLE  187
            E+   + PFP             ++   I+ QP       PE     S+  K  ++  L+
Sbjct  152  ELLTGKPPFPGING--------NEIYELIIDQPY----AFPELPSNLSEEAKDLLKKLLK  199

Query  188  KEPPRRATPWRMLEHPWM  205
            K+P +R T  + L+HPW 
Sbjct  200  KDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 99.5 bits (249),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 41/130 (32%), Positives = 61/130 (47%), Gaps = 12/130 (9%)

Query  6    GTISIAMEFCEGGSLDSIYKEVKKLGGRTGEKVLGKIAEGVLNGLTYLHSRKIIHRDIKP  65
              + I  E+  GG L      ++K   +   K L  +A  +  G+ YL S+  +HRD+  
Sbjct  74   EPLYIVTEYMPGGDLLDF---LRKHKRKLTLKDLLSMALQIAKGMEYLESKNFVHRDLAA  130

Query  66   SNILLCRNGQVKLCDFGVS------GEFGTKGDANTFIGTSYYMAPERITGQSYTITSDV  119
             N L+  N  VK+ DFG+S        +  +G     I    +MAPE +    +T  SDV
Sbjct  131  RNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPI---KWMAPESLKDGKFTSKSDV  187

Query  120  WSLGVTLLEV  129
            WS GV L E+
Sbjct  188  WSFGVLLWEI  197



Lambda      K        H        a         alpha
   0.320    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00001036

Length=503
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  162     2e-47
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            121     8e-32


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 162 bits (412),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 75/269 (28%), Positives = 109/269 (41%), Gaps = 56/269 (21%)

Query  214  LGSLGEGAGGAVTRCKLKDGKTVFALKIITTDPNPDVK-KQIVRELNFNKDCASEHICRY  272
            L  LG G+ G V + K +D   + A+K I  +     K K I+RE+   K     +I R 
Sbjct  4    LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  273  YGAFMDKSTGTISIAMEFCEGGSLDSIYKEVKKLGGRTGEKVLGKIAEGVLNGLTYLHSR  332
            Y AF DK    + + +E+ EGGSL  +  E         E+    I + +L GL      
Sbjct  64   YDAFEDKDN--LYLVLEYVEGGSLFDLLSEKGAFS----EREAKFIMKQILEGL------  111

Query  333  KIIHRDIKPSNILLCRNGQVKLCDFGVSGEFGTKGDANTFIGTSYYMAPERITGQSYTIT  392
                            +G                    TF+GT +YMAPE + G  Y   
Sbjct  112  ---------------ESG----------------SSLTTFVGTPWYMAPEVLGGNPYGPK  140

Query  393  SDVWSLGVTLLEVAQHRFPFPADGTEMQPRAGLIDLLTYIVRQPIPKLKDEPENRIRWSD  452
             DVWSLG  L E+   + PFP             ++   I+ QP       PE     S+
Sbjct  141  VDVWSLGCILYELLTGKPPFPGING--------NEIYELIIDQPY----AFPELPSNLSE  188

Query  453  NFKYFIECCLEKEPPRRATPWRMLEHPWM  481
              K  ++  L+K+P +R T  + L+HPW 
Sbjct  189  EAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 121 bits (305),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 57/199 (29%), Positives = 89/199 (45%), Gaps = 18/199 (9%)

Query  217  LGEGAGGAVTRCKLK----DGKTVFALKIITTDPNPDVKKQIVRELNFNKDCASEHICRY  272
            LGEGA G V +  LK    + K   A+K +    + + ++  + E +  K     +I + 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKLDHPNIVKL  66

Query  273  YGAFMDKSTGTISIAMEFCEGGSLDSIYKEVKKLGGRTGEKVLGKIAEGVLNGLTYLHSR  332
             G         + I  E+  GG L      ++K   +   K L  +A  +  G+ YL S+
Sbjct  67   LGVCTQ--GEPLYIVTEYMPGGDLLDF---LRKHKRKLTLKDLLSMALQIAKGMEYLESK  121

Query  333  KIIHRDIKPSNILLCRNGQVKLCDFGVS------GEFGTKGDANTFIGTSYYMAPERITG  386
              +HRD+   N L+  N  VK+ DFG+S        +  +G     I    +MAPE +  
Sbjct  122  NFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPI---KWMAPESLKD  178

Query  387  QSYTITSDVWSLGVTLLEV  405
              +T  SDVWS GV L E+
Sbjct  179  GKFTSKSDVWSFGVLLWEI  197



Lambda      K        H        a         alpha
   0.315    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 623795192


Query= TCONS_00001037

Length=503
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  162     2e-47
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            121     8e-32


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 162 bits (412),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 75/269 (28%), Positives = 109/269 (41%), Gaps = 56/269 (21%)

Query  214  LGSLGEGAGGAVTRCKLKDGKTVFALKIITTDPNPDVK-KQIVRELNFNKDCASEHICRY  272
            L  LG G+ G V + K +D   + A+K I  +     K K I+RE+   K     +I R 
Sbjct  4    LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  273  YGAFMDKSTGTISIAMEFCEGGSLDSIYKEVKKLGGRTGEKVLGKIAEGVLNGLTYLHSR  332
            Y AF DK    + + +E+ EGGSL  +  E         E+    I + +L GL      
Sbjct  64   YDAFEDKDN--LYLVLEYVEGGSLFDLLSEKGAFS----EREAKFIMKQILEGL------  111

Query  333  KIIHRDIKPSNILLCRNGQVKLCDFGVSGEFGTKGDANTFIGTSYYMAPERITGQSYTIT  392
                            +G                    TF+GT +YMAPE + G  Y   
Sbjct  112  ---------------ESG----------------SSLTTFVGTPWYMAPEVLGGNPYGPK  140

Query  393  SDVWSLGVTLLEVAQHRFPFPADGTEMQPRAGLIDLLTYIVRQPIPKLKDEPENRIRWSD  452
             DVWSLG  L E+   + PFP             ++   I+ QP       PE     S+
Sbjct  141  VDVWSLGCILYELLTGKPPFPGING--------NEIYELIIDQPY----AFPELPSNLSE  188

Query  453  NFKYFIECCLEKEPPRRATPWRMLEHPWM  481
              K  ++  L+K+P +R T  + L+HPW 
Sbjct  189  EAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 121 bits (305),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 57/199 (29%), Positives = 89/199 (45%), Gaps = 18/199 (9%)

Query  217  LGEGAGGAVTRCKLK----DGKTVFALKIITTDPNPDVKKQIVRELNFNKDCASEHICRY  272
            LGEGA G V +  LK    + K   A+K +    + + ++  + E +  K     +I + 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKLDHPNIVKL  66

Query  273  YGAFMDKSTGTISIAMEFCEGGSLDSIYKEVKKLGGRTGEKVLGKIAEGVLNGLTYLHSR  332
             G         + I  E+  GG L      ++K   +   K L  +A  +  G+ YL S+
Sbjct  67   LGVCTQ--GEPLYIVTEYMPGGDLLDF---LRKHKRKLTLKDLLSMALQIAKGMEYLESK  121

Query  333  KIIHRDIKPSNILLCRNGQVKLCDFGVS------GEFGTKGDANTFIGTSYYMAPERITG  386
              +HRD+   N L+  N  VK+ DFG+S        +  +G     I    +MAPE +  
Sbjct  122  NFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPI---KWMAPESLKD  178

Query  387  QSYTITSDVWSLGVTLLEV  405
              +T  SDVWS GV L E+
Sbjct  179  GKFTSKSDVWSFGVLLWEI  197



Lambda      K        H        a         alpha
   0.315    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 623795192


Query= TCONS_00001038

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00001039

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00006951

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00006952

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00006953

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00001041

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00001042

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00001040

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00001043

Length=1800
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463447 pfam12054, DUF3535, Domain of unknown function (DUF353...  537     5e-176
CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  249     7e-75 
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  96.1    6e-24 


>CDD:463447 pfam12054, DUF3535, Domain of unknown function (DUF3535).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
439 to 459 amino acids in length. This domain is found associated 
with pfam00271, pfam02985, pfam00176. This domain has 
two completely conserved residues (P and K) that may be functionally 
important.
Length=445

 Score = 537 bits (1386),  Expect = 5e-176, Method: Composition-based stats.
 Identities = 234/471 (50%), Positives = 295/471 (63%), Gaps = 44/471 (9%)

Query  645   VWSELLNSLETRGSFKSESDLLSHIKPLITLSMGPFGVPRYPVPMDASLFIKPSGLPFPS  704
             VW  LL SL+   +         H+ P +TL M P GVP     MDASL +KPSG P+  
Sbjct  1     VWEALLRSLKPPEALLHA--FCPHLSPWLTLLMTPIGVP-----MDASLLLKPSGQPYSP  53

Query  705   SAAAPARSSPASNTPEGTKGRRRKSEKKEAPPPS-----------AHNVDGHMLQGDIDL  753
                                  RRKS+KKE PPPS           +HNVD  M+ GD+ L
Sbjct  54    PE-------------------RRKSKKKEEPPPSDIPSPGRQGSSSHNVDKPMIGGDVTL  94

Query  754   VGADTMLRSKIYAARALGQLLFVW-DQNQLPSLWQSILEGLNHSASTSQLASAMIVEEYA  812
             VG D ++R++I AA+ALG LL  W +++ L    + +L  LN  ++  +L +A+I+EE+A
Sbjct  95    VGMDVVIRTRIAAAKALGLLLSYWPEESPLDFFTKLLLPYLNSPSALQRLLAAIIIEEWA  154

Query  813   K-----LSGPSGRYASTLCENLRPIIEGE-RPPWYSDIACYLHVARAQCHSLLNTFRDHA  866
             K      S        TL E L  I+E   RPP+Y ++  YL   R QC  LLNTFRD  
Sbjct  155   KNCKKEKSSSVSTLPETLSEKLLEILENPSRPPYYRELVPYLTRLRTQCQQLLNTFRDVG  214

Query  867   HVPGSRLPVLAVIVQGDPEAGPNAFSLSDAEKVIGPDFERLKKGLTPAQRITALQVLNDT  926
              V  S+LP LAV+VQG+PEAGP AFS+  AEK++G D+++LKK L+P Q++ ALQ L D 
Sbjct  215   KVSQSKLPKLAVVVQGEPEAGPGAFSIEQAEKLVGEDYDKLKKSLSPKQKLLALQQLEDR  274

Query  927   RATAESAVNEARNAREQRDLRVRAAAAGALVALSDIPKKPSHIIKGMMDSIKKEENAELQ  986
             R   ++A+ EA+ A+EQRD+RV AAAAGALVAL  +PKK + IIK +MDSIKKEEN ELQ
Sbjct  275   RRRVQAAIEEAKEAKEQRDVRVLAAAAGALVALKGLPKKLNPIIKPLMDSIKKEENEELQ  334

Query  987   QRSATAITSLVEYYTTSAKRGPVDKVIGNLVKYCCVDTSETPEFHHNAMLEKSILSLRKE  1046
             QRSA A+  L++      K GP DK++ NL  + CVDTSETPEFH NA L   IL+LRKE
Sbjct  335   QRSADALAHLIDLCVDRGKPGPNDKIVKNLCTFLCVDTSETPEFHPNAKLTDGILTLRKE  394

Query  1047  EDRRDHPDAAKFEREAKEARIMRRGAKEALEQLAVKFGSELMAKVPNLASL  1097
             ED+ DH DAAKFE EAKEARI RRGAK ALEQLA KFG+ L  KVP L  L
Sbjct  395   EDKADHADAAKFEEEAKEARIQRRGAKLALEQLAKKFGASLFEKVPKLWEL  445


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 249 bits (638),  Expect = 7e-75, Method: Composition-based stats.
 Identities = 117/312 (38%), Positives = 172/312 (55%), Gaps = 30/312 (10%)

Query  1313  YQQEGVNWLAFL-NRYNLHGILCDDMGLGKTLQTICIVASDHHMRAEEFARTQKPEVRKL  1371
             YQ EGVNW+  L N     GIL D+MGLGKTLQTI ++    H+           +    
Sbjct  1     YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVD----------KNWGG  50

Query  1372  PSLIVCPPSLSGHWQQELKQYA--PFLNCVAYVGPPAERSRLQSA---LPNADIVVTSYD  1426
             P+LIV P SL  +W  E +++   P L  V   G    + R ++    L + D+V+T+Y+
Sbjct  51    PTLIVVPLSLLHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYE  110

Query  1427  ICRNDNEVLNPINWNYCVLDEGHLIKNPKAKATIAVKRLLSNHRLILSGTPIQNNVLELW  1486
               R   E+L  ++W+  VLDEGH +KN K+K + A+K L + +R IL+GTP+QNN+ ELW
Sbjct  111   TLRKHKELLKKVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQNNLEELW  170

Query  1487  SLFDFLMPGFLGTEKVFLDRFAKPIAASRFSKSSSKEQEAGALAIEALHKQVLPFLLRRL  1546
             +L +FL PG  G+   F + F +PI             + G   +  LHK + PFLLRR 
Sbjct  171   ALLNFLRPGPFGSLSTFRNWFDRPIE--------RGGGKKG---VSRLHKLLKPFLLRRT  219

Query  1547  KEEVLNDLPPKIIQNYYCDPSELQRKLFEDF-TKKEQKALQDKVGSTEKADKEHIFQALQ  1605
             K++V   LPPK+    +C  S+LQRKL++ F  KK+  A++   G  E      +   L 
Sbjct  220   KKDVEKSLPPKVEYILFCRLSKLQRKLYQTFLLKKDLNAIKTGEGGREIKAS--LLNILM  277

Query  1606  YMRRLCNSPALV  1617
              +R++CN P L+
Sbjct  278   RLRKICNHPGLI  289


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 96.1 bits (240),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 6/102 (6%)

Query  1677  SPHRALIFCQMKEMLDIVQSEVFNKLLPSVQFLRLDGSVEATRRQDIVNRFNTDPSYDVL  1736
                + LIF Q K+ L+    E+  +    ++  RL G +    R++I+  F      DVL
Sbjct  14    RGGKVLIFSQTKKTLEA---ELLLEKE-GIKVARLHGDLSQEEREEILEDFR-KGKIDVL  68

Query  1737  LLTTSVGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIG  1778
             +  T V   GL+L   D VI  +  WNP   IQ + RA R G
Sbjct  69    V-ATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.318    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2273450800


Query= TCONS_00001044

Length=1897
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463447 pfam12054, DUF3535, Domain of unknown function (DUF353...  538     6e-176
CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  249     5e-75 
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  96.5    6e-24 


>CDD:463447 pfam12054, DUF3535, Domain of unknown function (DUF3535).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
439 to 459 amino acids in length. This domain is found associated 
with pfam00271, pfam02985, pfam00176. This domain has 
two completely conserved residues (P and K) that may be functionally 
important.
Length=445

 Score = 538 bits (1389),  Expect = 6e-176, Method: Composition-based stats.
 Identities = 234/471 (50%), Positives = 295/471 (63%), Gaps = 44/471 (9%)

Query  645   VWSELLNSLETRGSFKSESDLLSHIKPLITLSMGPFGVPRYPVPMDASLFIKPSGLPFPS  704
             VW  LL SL+   +         H+ P +TL M P GVP     MDASL +KPSG P+  
Sbjct  1     VWEALLRSLKPPEALLHA--FCPHLSPWLTLLMTPIGVP-----MDASLLLKPSGQPYSP  53

Query  705   SAAAPARSSPASNTPEGTKGRRRKSEKKEAPPPS-----------AHNVDGHMLQGDIDL  753
                                  RRKS+KKE PPPS           +HNVD  M+ GD+ L
Sbjct  54    PE-------------------RRKSKKKEEPPPSDIPSPGRQGSSSHNVDKPMIGGDVTL  94

Query  754   VGADTMLRSKIYAARALGQLLFVW-DQNQLPSLWQSILEGLNHSASTSQLASAMIVEEYA  812
             VG D ++R++I AA+ALG LL  W +++ L    + +L  LN  ++  +L +A+I+EE+A
Sbjct  95    VGMDVVIRTRIAAAKALGLLLSYWPEESPLDFFTKLLLPYLNSPSALQRLLAAIIIEEWA  154

Query  813   K-----LSGPSGRYASTLCENLRPIIEGE-RPPWYSDIACYLHVARAQCHSLLNTFRDHA  866
             K      S        TL E L  I+E   RPP+Y ++  YL   R QC  LLNTFRD  
Sbjct  155   KNCKKEKSSSVSTLPETLSEKLLEILENPSRPPYYRELVPYLTRLRTQCQQLLNTFRDVG  214

Query  867   HVPGSRLPVLAVIVQGDPEAGPNAFSLSDAEKVIGPDFERLKKGLTPAQRITALQVLNDT  926
              V  S+LP LAV+VQG+PEAGP AFS+  AEK++G D+++LKK L+P Q++ ALQ L D 
Sbjct  215   KVSQSKLPKLAVVVQGEPEAGPGAFSIEQAEKLVGEDYDKLKKSLSPKQKLLALQQLEDR  274

Query  927   RATAESAVNEARNAREQRDLRVRAAAAGALVALSDIPKKPSHIIKGMMDSIKKEENAELQ  986
             R   ++A+ EA+ A+EQRD+RV AAAAGALVAL  +PKK + IIK +MDSIKKEEN ELQ
Sbjct  275   RRRVQAAIEEAKEAKEQRDVRVLAAAAGALVALKGLPKKLNPIIKPLMDSIKKEENEELQ  334

Query  987   QRSATAITSLVEYYTTSAKRGPVDKVIGNLVKYCCVDTSETPEFHHNAMLEKSILSLRKE  1046
             QRSA A+  L++      K GP DK++ NL  + CVDTSETPEFH NA L   IL+LRKE
Sbjct  335   QRSADALAHLIDLCVDRGKPGPNDKIVKNLCTFLCVDTSETPEFHPNAKLTDGILTLRKE  394

Query  1047  EDRRDHPDAAKFEREAKEARIMRRGAKEALEQLAVKFGSELMAKVPNLASL  1097
             ED+ DH DAAKFE EAKEARI RRGAK ALEQLA KFG+ L  KVP L  L
Sbjct  395   EDKADHADAAKFEEEAKEARIQRRGAKLALEQLAKKFGASLFEKVPKLWEL  445


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 249 bits (639),  Expect = 5e-75, Method: Composition-based stats.
 Identities = 117/312 (38%), Positives = 172/312 (55%), Gaps = 30/312 (10%)

Query  1313  YQQEGVNWLAFL-NRYNLHGILCDDMGLGKTLQTICIVASDHHMRAEEFARTQKPEVRKL  1371
             YQ EGVNW+  L N     GIL D+MGLGKTLQTI ++    H+           +    
Sbjct  1     YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVD----------KNWGG  50

Query  1372  PSLIVCPPSLSGHWQQELKQYA--PFLNCVAYVGPPAERSRLQSA---LPNADIVVTSYD  1426
             P+LIV P SL  +W  E +++   P L  V   G    + R ++    L + D+V+T+Y+
Sbjct  51    PTLIVVPLSLLHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYE  110

Query  1427  ICRNDNEVLNPINWNYCVLDEGHLIKNPKAKATIAVKRLLSNHRLILSGTPIQNNVLELW  1486
               R   E+L  ++W+  VLDEGH +KN K+K + A+K L + +R IL+GTP+QNN+ ELW
Sbjct  111   TLRKHKELLKKVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQNNLEELW  170

Query  1487  SLFDFLMPGFLGTEKVFLDRFAKPIAASRFSKSSSKEQEAGALAIEALHKQVLPFLLRRL  1546
             +L +FL PG  G+   F + F +PI             + G   +  LHK + PFLLRR 
Sbjct  171   ALLNFLRPGPFGSLSTFRNWFDRPIE--------RGGGKKG---VSRLHKLLKPFLLRRT  219

Query  1547  KEEVLNDLPPKIIQNYYCDPSELQRKLFEDF-TKKEQKALQDKVGSTEKADKEHIFQALQ  1605
             K++V   LPPK+    +C  S+LQRKL++ F  KK+  A++   G  E      +   L 
Sbjct  220   KKDVEKSLPPKVEYILFCRLSKLQRKLYQTFLLKKDLNAIKTGEGGREIKAS--LLNILM  277

Query  1606  YMRRLCNSPALV  1617
              +R++CN P L+
Sbjct  278   RLRKICNHPGLI  289


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 96.5 bits (241),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 6/102 (6%)

Query  1677  SPHRALIFCQMKEMLDIVQSEVFNKLLPSVQFLRLDGSVEATRRQDIVNRFNTDPSYDVL  1736
                + LIF Q K+ L+    E+  +    ++  RL G +    R++I+  F      DVL
Sbjct  14    RGGKVLIFSQTKKTLEA---ELLLEKE-GIKVARLHGDLSQEEREEILEDFR-KGKIDVL  68

Query  1737  LLTTSVGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIG  1778
             +  T V   GL+L   D VI  +  WNP   IQ + RA R G
Sbjct  69    V-ATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2403171228


Query= TCONS_00001045

Length=1897
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463447 pfam12054, DUF3535, Domain of unknown function (DUF353...  538     6e-176
CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  249     5e-75 
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  96.5    6e-24 


>CDD:463447 pfam12054, DUF3535, Domain of unknown function (DUF3535).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
439 to 459 amino acids in length. This domain is found associated 
with pfam00271, pfam02985, pfam00176. This domain has 
two completely conserved residues (P and K) that may be functionally 
important.
Length=445

 Score = 538 bits (1389),  Expect = 6e-176, Method: Composition-based stats.
 Identities = 234/471 (50%), Positives = 295/471 (63%), Gaps = 44/471 (9%)

Query  645   VWSELLNSLETRGSFKSESDLLSHIKPLITLSMGPFGVPRYPVPMDASLFIKPSGLPFPS  704
             VW  LL SL+   +         H+ P +TL M P GVP     MDASL +KPSG P+  
Sbjct  1     VWEALLRSLKPPEALLHA--FCPHLSPWLTLLMTPIGVP-----MDASLLLKPSGQPYSP  53

Query  705   SAAAPARSSPASNTPEGTKGRRRKSEKKEAPPPS-----------AHNVDGHMLQGDIDL  753
                                  RRKS+KKE PPPS           +HNVD  M+ GD+ L
Sbjct  54    PE-------------------RRKSKKKEEPPPSDIPSPGRQGSSSHNVDKPMIGGDVTL  94

Query  754   VGADTMLRSKIYAARALGQLLFVW-DQNQLPSLWQSILEGLNHSASTSQLASAMIVEEYA  812
             VG D ++R++I AA+ALG LL  W +++ L    + +L  LN  ++  +L +A+I+EE+A
Sbjct  95    VGMDVVIRTRIAAAKALGLLLSYWPEESPLDFFTKLLLPYLNSPSALQRLLAAIIIEEWA  154

Query  813   K-----LSGPSGRYASTLCENLRPIIEGE-RPPWYSDIACYLHVARAQCHSLLNTFRDHA  866
             K      S        TL E L  I+E   RPP+Y ++  YL   R QC  LLNTFRD  
Sbjct  155   KNCKKEKSSSVSTLPETLSEKLLEILENPSRPPYYRELVPYLTRLRTQCQQLLNTFRDVG  214

Query  867   HVPGSRLPVLAVIVQGDPEAGPNAFSLSDAEKVIGPDFERLKKGLTPAQRITALQVLNDT  926
              V  S+LP LAV+VQG+PEAGP AFS+  AEK++G D+++LKK L+P Q++ ALQ L D 
Sbjct  215   KVSQSKLPKLAVVVQGEPEAGPGAFSIEQAEKLVGEDYDKLKKSLSPKQKLLALQQLEDR  274

Query  927   RATAESAVNEARNAREQRDLRVRAAAAGALVALSDIPKKPSHIIKGMMDSIKKEENAELQ  986
             R   ++A+ EA+ A+EQRD+RV AAAAGALVAL  +PKK + IIK +MDSIKKEEN ELQ
Sbjct  275   RRRVQAAIEEAKEAKEQRDVRVLAAAAGALVALKGLPKKLNPIIKPLMDSIKKEENEELQ  334

Query  987   QRSATAITSLVEYYTTSAKRGPVDKVIGNLVKYCCVDTSETPEFHHNAMLEKSILSLRKE  1046
             QRSA A+  L++      K GP DK++ NL  + CVDTSETPEFH NA L   IL+LRKE
Sbjct  335   QRSADALAHLIDLCVDRGKPGPNDKIVKNLCTFLCVDTSETPEFHPNAKLTDGILTLRKE  394

Query  1047  EDRRDHPDAAKFEREAKEARIMRRGAKEALEQLAVKFGSELMAKVPNLASL  1097
             ED+ DH DAAKFE EAKEARI RRGAK ALEQLA KFG+ L  KVP L  L
Sbjct  395   EDKADHADAAKFEEEAKEARIQRRGAKLALEQLAKKFGASLFEKVPKLWEL  445


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 249 bits (639),  Expect = 5e-75, Method: Composition-based stats.
 Identities = 117/312 (38%), Positives = 172/312 (55%), Gaps = 30/312 (10%)

Query  1313  YQQEGVNWLAFL-NRYNLHGILCDDMGLGKTLQTICIVASDHHMRAEEFARTQKPEVRKL  1371
             YQ EGVNW+  L N     GIL D+MGLGKTLQTI ++    H+           +    
Sbjct  1     YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVD----------KNWGG  50

Query  1372  PSLIVCPPSLSGHWQQELKQYA--PFLNCVAYVGPPAERSRLQSA---LPNADIVVTSYD  1426
             P+LIV P SL  +W  E +++   P L  V   G    + R ++    L + D+V+T+Y+
Sbjct  51    PTLIVVPLSLLHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYE  110

Query  1427  ICRNDNEVLNPINWNYCVLDEGHLIKNPKAKATIAVKRLLSNHRLILSGTPIQNNVLELW  1486
               R   E+L  ++W+  VLDEGH +KN K+K + A+K L + +R IL+GTP+QNN+ ELW
Sbjct  111   TLRKHKELLKKVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQNNLEELW  170

Query  1487  SLFDFLMPGFLGTEKVFLDRFAKPIAASRFSKSSSKEQEAGALAIEALHKQVLPFLLRRL  1546
             +L +FL PG  G+   F + F +PI             + G   +  LHK + PFLLRR 
Sbjct  171   ALLNFLRPGPFGSLSTFRNWFDRPIE--------RGGGKKG---VSRLHKLLKPFLLRRT  219

Query  1547  KEEVLNDLPPKIIQNYYCDPSELQRKLFEDF-TKKEQKALQDKVGSTEKADKEHIFQALQ  1605
             K++V   LPPK+    +C  S+LQRKL++ F  KK+  A++   G  E      +   L 
Sbjct  220   KKDVEKSLPPKVEYILFCRLSKLQRKLYQTFLLKKDLNAIKTGEGGREIKAS--LLNILM  277

Query  1606  YMRRLCNSPALV  1617
              +R++CN P L+
Sbjct  278   RLRKICNHPGLI  289


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 96.5 bits (241),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 6/102 (6%)

Query  1677  SPHRALIFCQMKEMLDIVQSEVFNKLLPSVQFLRLDGSVEATRRQDIVNRFNTDPSYDVL  1736
                + LIF Q K+ L+    E+  +    ++  RL G +    R++I+  F      DVL
Sbjct  14    RGGKVLIFSQTKKTLEA---ELLLEKE-GIKVARLHGDLSQEEREEILEDFR-KGKIDVL  68

Query  1737  LLTTSVGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIG  1778
             +  T V   GL+L   D VI  +  WNP   IQ + RA R G
Sbjct  69    V-ATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2403171228


Query= TCONS_00001047

Length=1891
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463447 pfam12054, DUF3535, Domain of unknown function (DUF353...  538     5e-176
CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  249     5e-75 
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  96.5    6e-24 


>CDD:463447 pfam12054, DUF3535, Domain of unknown function (DUF3535).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
439 to 459 amino acids in length. This domain is found associated 
with pfam00271, pfam02985, pfam00176. This domain has 
two completely conserved residues (P and K) that may be functionally 
important.
Length=445

 Score = 538 bits (1389),  Expect = 5e-176, Method: Composition-based stats.
 Identities = 234/471 (50%), Positives = 295/471 (63%), Gaps = 44/471 (9%)

Query  639   VWSELLNSLETRGSFKSESDLLSHIKPLITLSMGPFGVPRYPVPMDASLFIKPSGLPFPS  698
             VW  LL SL+   +         H+ P +TL M P GVP     MDASL +KPSG P+  
Sbjct  1     VWEALLRSLKPPEALLHA--FCPHLSPWLTLLMTPIGVP-----MDASLLLKPSGQPYSP  53

Query  699   SAAAPARSSPASNTPEGTKGRRRKSEKKEAPPPS-----------AHNVDGHMLQGDIDL  747
                                  RRKS+KKE PPPS           +HNVD  M+ GD+ L
Sbjct  54    PE-------------------RRKSKKKEEPPPSDIPSPGRQGSSSHNVDKPMIGGDVTL  94

Query  748   VGADTMLRSKIYAARALGQLLFVW-DQNQLPSLWQSILEGLNHSASTSQLASAMIVEEYA  806
             VG D ++R++I AA+ALG LL  W +++ L    + +L  LN  ++  +L +A+I+EE+A
Sbjct  95    VGMDVVIRTRIAAAKALGLLLSYWPEESPLDFFTKLLLPYLNSPSALQRLLAAIIIEEWA  154

Query  807   K-----LSGPSGRYASTLCENLRPIIEGE-RPPWYSDIACYLHVARAQCHSLLNTFRDHA  860
             K      S        TL E L  I+E   RPP+Y ++  YL   R QC  LLNTFRD  
Sbjct  155   KNCKKEKSSSVSTLPETLSEKLLEILENPSRPPYYRELVPYLTRLRTQCQQLLNTFRDVG  214

Query  861   HVPGSRLPVLAVIVQGDPEAGPNAFSLSDAEKVIGPDFERLKKGLTPAQRITALQVLNDT  920
              V  S+LP LAV+VQG+PEAGP AFS+  AEK++G D+++LKK L+P Q++ ALQ L D 
Sbjct  215   KVSQSKLPKLAVVVQGEPEAGPGAFSIEQAEKLVGEDYDKLKKSLSPKQKLLALQQLEDR  274

Query  921   RATAESAVNEARNAREQRDLRVRAAAAGALVALSDIPKKPSHIIKGMMDSIKKEENAELQ  980
             R   ++A+ EA+ A+EQRD+RV AAAAGALVAL  +PKK + IIK +MDSIKKEEN ELQ
Sbjct  275   RRRVQAAIEEAKEAKEQRDVRVLAAAAGALVALKGLPKKLNPIIKPLMDSIKKEENEELQ  334

Query  981   QRSATAITSLVEYYTTSAKRGPVDKVIGNLVKYCCVDTSETPEFHHNAMLEKSILSLRKE  1040
             QRSA A+  L++      K GP DK++ NL  + CVDTSETPEFH NA L   IL+LRKE
Sbjct  335   QRSADALAHLIDLCVDRGKPGPNDKIVKNLCTFLCVDTSETPEFHPNAKLTDGILTLRKE  394

Query  1041  EDRRDHPDAAKFEREAKEARIMRRGAKEALEQLAVKFGSELMAKVPNLASL  1091
             ED+ DH DAAKFE EAKEARI RRGAK ALEQLA KFG+ L  KVP L  L
Sbjct  395   EDKADHADAAKFEEEAKEARIQRRGAKLALEQLAKKFGASLFEKVPKLWEL  445


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 249 bits (639),  Expect = 5e-75, Method: Composition-based stats.
 Identities = 117/312 (38%), Positives = 172/312 (55%), Gaps = 30/312 (10%)

Query  1307  YQQEGVNWLAFL-NRYNLHGILCDDMGLGKTLQTICIVASDHHMRAEEFARTQKPEVRKL  1365
             YQ EGVNW+  L N     GIL D+MGLGKTLQTI ++    H+           +    
Sbjct  1     YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVD----------KNWGG  50

Query  1366  PSLIVCPPSLSGHWQQELKQYA--PFLNCVAYVGPPAERSRLQSA---LPNADIVVTSYD  1420
             P+LIV P SL  +W  E +++   P L  V   G    + R ++    L + D+V+T+Y+
Sbjct  51    PTLIVVPLSLLHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYE  110

Query  1421  ICRNDNEVLNPINWNYCVLDEGHLIKNPKAKATIAVKRLLSNHRLILSGTPIQNNVLELW  1480
               R   E+L  ++W+  VLDEGH +KN K+K + A+K L + +R IL+GTP+QNN+ ELW
Sbjct  111   TLRKHKELLKKVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQNNLEELW  170

Query  1481  SLFDFLMPGFLGTEKVFLDRFAKPIAASRFSKSSSKEQEAGALAIEALHKQVLPFLLRRL  1540
             +L +FL PG  G+   F + F +PI             + G   +  LHK + PFLLRR 
Sbjct  171   ALLNFLRPGPFGSLSTFRNWFDRPIE--------RGGGKKG---VSRLHKLLKPFLLRRT  219

Query  1541  KEEVLNDLPPKIIQNYYCDPSELQRKLFEDF-TKKEQKALQDKVGSTEKADKEHIFQALQ  1599
             K++V   LPPK+    +C  S+LQRKL++ F  KK+  A++   G  E      +   L 
Sbjct  220   KKDVEKSLPPKVEYILFCRLSKLQRKLYQTFLLKKDLNAIKTGEGGREIKAS--LLNILM  277

Query  1600  YMRRLCNSPALV  1611
              +R++CN P L+
Sbjct  278   RLRKICNHPGLI  289


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 96.5 bits (241),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 6/102 (6%)

Query  1671  SPHRALIFCQMKEMLDIVQSEVFNKLLPSVQFLRLDGSVEATRRQDIVNRFNTDPSYDVL  1730
                + LIF Q K+ L+    E+  +    ++  RL G +    R++I+  F      DVL
Sbjct  14    RGGKVLIFSQTKKTLEA---ELLLEKE-GIKVARLHGDLSQEEREEILEDFR-KGKIDVL  68

Query  1731  LLTTSVGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIG  1772
             +  T V   GL+L   D VI  +  WNP   IQ + RA R G
Sbjct  69    V-ATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2395147284


Query= TCONS_00001046

Length=1897
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463447 pfam12054, DUF3535, Domain of unknown function (DUF353...  538     6e-176
CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  249     5e-75 
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  96.5    6e-24 


>CDD:463447 pfam12054, DUF3535, Domain of unknown function (DUF3535).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
439 to 459 amino acids in length. This domain is found associated 
with pfam00271, pfam02985, pfam00176. This domain has 
two completely conserved residues (P and K) that may be functionally 
important.
Length=445

 Score = 538 bits (1389),  Expect = 6e-176, Method: Composition-based stats.
 Identities = 234/471 (50%), Positives = 295/471 (63%), Gaps = 44/471 (9%)

Query  645   VWSELLNSLETRGSFKSESDLLSHIKPLITLSMGPFGVPRYPVPMDASLFIKPSGLPFPS  704
             VW  LL SL+   +         H+ P +TL M P GVP     MDASL +KPSG P+  
Sbjct  1     VWEALLRSLKPPEALLHA--FCPHLSPWLTLLMTPIGVP-----MDASLLLKPSGQPYSP  53

Query  705   SAAAPARSSPASNTPEGTKGRRRKSEKKEAPPPS-----------AHNVDGHMLQGDIDL  753
                                  RRKS+KKE PPPS           +HNVD  M+ GD+ L
Sbjct  54    PE-------------------RRKSKKKEEPPPSDIPSPGRQGSSSHNVDKPMIGGDVTL  94

Query  754   VGADTMLRSKIYAARALGQLLFVW-DQNQLPSLWQSILEGLNHSASTSQLASAMIVEEYA  812
             VG D ++R++I AA+ALG LL  W +++ L    + +L  LN  ++  +L +A+I+EE+A
Sbjct  95    VGMDVVIRTRIAAAKALGLLLSYWPEESPLDFFTKLLLPYLNSPSALQRLLAAIIIEEWA  154

Query  813   K-----LSGPSGRYASTLCENLRPIIEGE-RPPWYSDIACYLHVARAQCHSLLNTFRDHA  866
             K      S        TL E L  I+E   RPP+Y ++  YL   R QC  LLNTFRD  
Sbjct  155   KNCKKEKSSSVSTLPETLSEKLLEILENPSRPPYYRELVPYLTRLRTQCQQLLNTFRDVG  214

Query  867   HVPGSRLPVLAVIVQGDPEAGPNAFSLSDAEKVIGPDFERLKKGLTPAQRITALQVLNDT  926
              V  S+LP LAV+VQG+PEAGP AFS+  AEK++G D+++LKK L+P Q++ ALQ L D 
Sbjct  215   KVSQSKLPKLAVVVQGEPEAGPGAFSIEQAEKLVGEDYDKLKKSLSPKQKLLALQQLEDR  274

Query  927   RATAESAVNEARNAREQRDLRVRAAAAGALVALSDIPKKPSHIIKGMMDSIKKEENAELQ  986
             R   ++A+ EA+ A+EQRD+RV AAAAGALVAL  +PKK + IIK +MDSIKKEEN ELQ
Sbjct  275   RRRVQAAIEEAKEAKEQRDVRVLAAAAGALVALKGLPKKLNPIIKPLMDSIKKEENEELQ  334

Query  987   QRSATAITSLVEYYTTSAKRGPVDKVIGNLVKYCCVDTSETPEFHHNAMLEKSILSLRKE  1046
             QRSA A+  L++      K GP DK++ NL  + CVDTSETPEFH NA L   IL+LRKE
Sbjct  335   QRSADALAHLIDLCVDRGKPGPNDKIVKNLCTFLCVDTSETPEFHPNAKLTDGILTLRKE  394

Query  1047  EDRRDHPDAAKFEREAKEARIMRRGAKEALEQLAVKFGSELMAKVPNLASL  1097
             ED+ DH DAAKFE EAKEARI RRGAK ALEQLA KFG+ L  KVP L  L
Sbjct  395   EDKADHADAAKFEEEAKEARIQRRGAKLALEQLAKKFGASLFEKVPKLWEL  445


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 249 bits (639),  Expect = 5e-75, Method: Composition-based stats.
 Identities = 117/312 (38%), Positives = 172/312 (55%), Gaps = 30/312 (10%)

Query  1313  YQQEGVNWLAFL-NRYNLHGILCDDMGLGKTLQTICIVASDHHMRAEEFARTQKPEVRKL  1371
             YQ EGVNW+  L N     GIL D+MGLGKTLQTI ++    H+           +    
Sbjct  1     YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVD----------KNWGG  50

Query  1372  PSLIVCPPSLSGHWQQELKQYA--PFLNCVAYVGPPAERSRLQSA---LPNADIVVTSYD  1426
             P+LIV P SL  +W  E +++   P L  V   G    + R ++    L + D+V+T+Y+
Sbjct  51    PTLIVVPLSLLHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYE  110

Query  1427  ICRNDNEVLNPINWNYCVLDEGHLIKNPKAKATIAVKRLLSNHRLILSGTPIQNNVLELW  1486
               R   E+L  ++W+  VLDEGH +KN K+K + A+K L + +R IL+GTP+QNN+ ELW
Sbjct  111   TLRKHKELLKKVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQNNLEELW  170

Query  1487  SLFDFLMPGFLGTEKVFLDRFAKPIAASRFSKSSSKEQEAGALAIEALHKQVLPFLLRRL  1546
             +L +FL PG  G+   F + F +PI             + G   +  LHK + PFLLRR 
Sbjct  171   ALLNFLRPGPFGSLSTFRNWFDRPIE--------RGGGKKG---VSRLHKLLKPFLLRRT  219

Query  1547  KEEVLNDLPPKIIQNYYCDPSELQRKLFEDF-TKKEQKALQDKVGSTEKADKEHIFQALQ  1605
             K++V   LPPK+    +C  S+LQRKL++ F  KK+  A++   G  E      +   L 
Sbjct  220   KKDVEKSLPPKVEYILFCRLSKLQRKLYQTFLLKKDLNAIKTGEGGREIKAS--LLNILM  277

Query  1606  YMRRLCNSPALV  1617
              +R++CN P L+
Sbjct  278   RLRKICNHPGLI  289


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 96.5 bits (241),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 6/102 (6%)

Query  1677  SPHRALIFCQMKEMLDIVQSEVFNKLLPSVQFLRLDGSVEATRRQDIVNRFNTDPSYDVL  1736
                + LIF Q K+ L+    E+  +    ++  RL G +    R++I+  F      DVL
Sbjct  14    RGGKVLIFSQTKKTLEA---ELLLEKE-GIKVARLHGDLSQEEREEILEDFR-KGKIDVL  68

Query  1737  LLTTSVGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIG  1778
             +  T V   GL+L   D VI  +  WNP   IQ + RA R G
Sbjct  69    V-ATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2403171228


Query= TCONS_00001048

Length=623


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 793541268


Query= TCONS_00001049

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428330 pfam05139, Erythro_esteras, Erythromycin esterase. Thi...  391     7e-136


>CDD:428330 pfam05139, Erythro_esteras, Erythromycin esterase.  This family 
includes erythromycin esterase enzymes that confer resistance 
to the erythromycin antibiotic.
Length=311

 Score = 391 bits (1007),  Expect = 7e-136, Method: Composition-based stats.
 Identities = 157/372 (42%), Positives = 191/372 (51%), Gaps = 68/372 (18%)

Query  74   IEQHGYTMVALEADWPDAEAIDRYVRQRPGPKAGIGGKARDLEPFKRFPTWMWRNREMQD  133
            +E+HG+T VALEADWPDA  +DRYVR   G               +RFP WMWRN E+ D
Sbjct  1    VEEHGFTAVALEADWPDALRVDRYVRGGTGDPREAA---------RRFPFWMWRNEEVLD  51

Query  134  LVEWMRNRNAKLPNEKKAGVYGLDLYSMGASIRAVIDYLDRVDPPAGKEARRRYGCLQPW  193
            LVEW+R  NA  P     G YGLDLYS+  S+ AV+DYLDRVDP     AR RY CL P+
Sbjct  52   LVEWLREYNADRPGLPPVGFYGLDLYSLRESLDAVLDYLDRVDPELAGRARERYACLAPF  111

Query  194  VDEPS-AYGLASLRGMEDCESGVLQMLRDLLDKRLQYAQHD-VRDGEEFHSGEQNAFVVR  251
             ++P  A        +  CE  V+ +L DLL +R +YA  D     EEF   EQNA +V 
Sbjct  112  GEDPQRAAASGPAALLRSCEDDVVALLADLLARREEYAARDGEAAAEEFFWAEQNARLVA  171

Query  252  DAERYYKAMYYSSASSWTL-----RDTHMFDTLRRLFRHKPAGAKAIVWAHNSHCGDARY  306
            +AERYY+AM      SW L     RD HM + L  L  H+  G K +VWAHNSH GDAR 
Sbjct  172  NAERYYRAM-RGRDESWNLRLFALRDRHMAENLEWLLEHR--GGKIVVWAHNSHIGDARA  228

Query  307  TSMGTRRNEVNIGQLIRENFGRENVAILGCGTHTGTVAAAHEWDDDMQVMKVRPSRDDSW  366
            T MG RR E+N GQL+RE +G +    +G GT TGTVAAA +W   M+VM V P    S 
Sbjct  229  TDMGYRRGELNAGQLLRERYGDD-YYAIGFGTGTGTVAAADDWGGPMEVMTVPPPPPGSL  287

Query  367  ETIAHDTGIPSFVIDLRKEHLDPALRTAMAAENSRLERFIGVIYRPDTERISHYSQAYLH  426
            E + H  G                                                A L 
Sbjct  288  EALLHAAG------------------------------------------------AVLA  299

Query  427  NQFDAYIWFDVT  438
            +QFDA I+ D T
Sbjct  300  DQFDALIFIDET  311



Lambda      K        H        a         alpha
   0.321    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00001050

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428330 pfam05139, Erythro_esteras, Erythromycin esterase. Thi...  391     7e-136


>CDD:428330 pfam05139, Erythro_esteras, Erythromycin esterase.  This family 
includes erythromycin esterase enzymes that confer resistance 
to the erythromycin antibiotic.
Length=311

 Score = 391 bits (1007),  Expect = 7e-136, Method: Composition-based stats.
 Identities = 157/372 (42%), Positives = 191/372 (51%), Gaps = 68/372 (18%)

Query  74   IEQHGYTMVALEADWPDAEAIDRYVRQRPGPKAGIGGKARDLEPFKRFPTWMWRNREMQD  133
            +E+HG+T VALEADWPDA  +DRYVR   G               +RFP WMWRN E+ D
Sbjct  1    VEEHGFTAVALEADWPDALRVDRYVRGGTGDPREAA---------RRFPFWMWRNEEVLD  51

Query  134  LVEWMRNRNAKLPNEKKAGVYGLDLYSMGASIRAVIDYLDRVDPPAGKEARRRYGCLQPW  193
            LVEW+R  NA  P     G YGLDLYS+  S+ AV+DYLDRVDP     AR RY CL P+
Sbjct  52   LVEWLREYNADRPGLPPVGFYGLDLYSLRESLDAVLDYLDRVDPELAGRARERYACLAPF  111

Query  194  VDEPS-AYGLASLRGMEDCESGVLQMLRDLLDKRLQYAQHD-VRDGEEFHSGEQNAFVVR  251
             ++P  A        +  CE  V+ +L DLL +R +YA  D     EEF   EQNA +V 
Sbjct  112  GEDPQRAAASGPAALLRSCEDDVVALLADLLARREEYAARDGEAAAEEFFWAEQNARLVA  171

Query  252  DAERYYKAMYYSSASSWTL-----RDTHMFDTLRRLFRHKPAGAKAIVWAHNSHCGDARY  306
            +AERYY+AM      SW L     RD HM + L  L  H+  G K +VWAHNSH GDAR 
Sbjct  172  NAERYYRAM-RGRDESWNLRLFALRDRHMAENLEWLLEHR--GGKIVVWAHNSHIGDARA  228

Query  307  TSMGTRRNEVNIGQLIRENFGRENVAILGCGTHTGTVAAAHEWDDDMQVMKVRPSRDDSW  366
            T MG RR E+N GQL+RE +G +    +G GT TGTVAAA +W   M+VM V P    S 
Sbjct  229  TDMGYRRGELNAGQLLRERYGDD-YYAIGFGTGTGTVAAADDWGGPMEVMTVPPPPPGSL  287

Query  367  ETIAHDTGIPSFVIDLRKEHLDPALRTAMAAENSRLERFIGVIYRPDTERISHYSQAYLH  426
            E + H  G                                                A L 
Sbjct  288  EALLHAAG------------------------------------------------AVLA  299

Query  427  NQFDAYIWFDVT  438
            +QFDA I+ D T
Sbjct  300  DQFDALIFIDET  311



Lambda      K        H        a         alpha
   0.321    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00001051

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428330 pfam05139, Erythro_esteras, Erythromycin esterase. Thi...  391     7e-136


>CDD:428330 pfam05139, Erythro_esteras, Erythromycin esterase.  This family 
includes erythromycin esterase enzymes that confer resistance 
to the erythromycin antibiotic.
Length=311

 Score = 391 bits (1007),  Expect = 7e-136, Method: Composition-based stats.
 Identities = 157/372 (42%), Positives = 191/372 (51%), Gaps = 68/372 (18%)

Query  74   IEQHGYTMVALEADWPDAEAIDRYVRQRPGPKAGIGGKARDLEPFKRFPTWMWRNREMQD  133
            +E+HG+T VALEADWPDA  +DRYVR   G               +RFP WMWRN E+ D
Sbjct  1    VEEHGFTAVALEADWPDALRVDRYVRGGTGDPREAA---------RRFPFWMWRNEEVLD  51

Query  134  LVEWMRNRNAKLPNEKKAGVYGLDLYSMGASIRAVIDYLDRVDPPAGKEARRRYGCLQPW  193
            LVEW+R  NA  P     G YGLDLYS+  S+ AV+DYLDRVDP     AR RY CL P+
Sbjct  52   LVEWLREYNADRPGLPPVGFYGLDLYSLRESLDAVLDYLDRVDPELAGRARERYACLAPF  111

Query  194  VDEPS-AYGLASLRGMEDCESGVLQMLRDLLDKRLQYAQHD-VRDGEEFHSGEQNAFVVR  251
             ++P  A        +  CE  V+ +L DLL +R +YA  D     EEF   EQNA +V 
Sbjct  112  GEDPQRAAASGPAALLRSCEDDVVALLADLLARREEYAARDGEAAAEEFFWAEQNARLVA  171

Query  252  DAERYYKAMYYSSASSWTL-----RDTHMFDTLRRLFRHKPAGAKAIVWAHNSHCGDARY  306
            +AERYY+AM      SW L     RD HM + L  L  H+  G K +VWAHNSH GDAR 
Sbjct  172  NAERYYRAM-RGRDESWNLRLFALRDRHMAENLEWLLEHR--GGKIVVWAHNSHIGDARA  228

Query  307  TSMGTRRNEVNIGQLIRENFGRENVAILGCGTHTGTVAAAHEWDDDMQVMKVRPSRDDSW  366
            T MG RR E+N GQL+RE +G +    +G GT TGTVAAA +W   M+VM V P    S 
Sbjct  229  TDMGYRRGELNAGQLLRERYGDD-YYAIGFGTGTGTVAAADDWGGPMEVMTVPPPPPGSL  287

Query  367  ETIAHDTGIPSFVIDLRKEHLDPALRTAMAAENSRLERFIGVIYRPDTERISHYSQAYLH  426
            E + H  G                                                A L 
Sbjct  288  EALLHAAG------------------------------------------------AVLA  299

Query  427  NQFDAYIWFDVT  438
            +QFDA I+ D T
Sbjct  300  DQFDALIFIDET  311



Lambda      K        H        a         alpha
   0.321    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00001052

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428330 pfam05139, Erythro_esteras, Erythromycin esterase. Thi...  391     7e-136


>CDD:428330 pfam05139, Erythro_esteras, Erythromycin esterase.  This family 
includes erythromycin esterase enzymes that confer resistance 
to the erythromycin antibiotic.
Length=311

 Score = 391 bits (1007),  Expect = 7e-136, Method: Composition-based stats.
 Identities = 157/372 (42%), Positives = 191/372 (51%), Gaps = 68/372 (18%)

Query  74   IEQHGYTMVALEADWPDAEAIDRYVRQRPGPKAGIGGKARDLEPFKRFPTWMWRNREMQD  133
            +E+HG+T VALEADWPDA  +DRYVR   G               +RFP WMWRN E+ D
Sbjct  1    VEEHGFTAVALEADWPDALRVDRYVRGGTGDPREAA---------RRFPFWMWRNEEVLD  51

Query  134  LVEWMRNRNAKLPNEKKAGVYGLDLYSMGASIRAVIDYLDRVDPPAGKEARRRYGCLQPW  193
            LVEW+R  NA  P     G YGLDLYS+  S+ AV+DYLDRVDP     AR RY CL P+
Sbjct  52   LVEWLREYNADRPGLPPVGFYGLDLYSLRESLDAVLDYLDRVDPELAGRARERYACLAPF  111

Query  194  VDEPS-AYGLASLRGMEDCESGVLQMLRDLLDKRLQYAQHD-VRDGEEFHSGEQNAFVVR  251
             ++P  A        +  CE  V+ +L DLL +R +YA  D     EEF   EQNA +V 
Sbjct  112  GEDPQRAAASGPAALLRSCEDDVVALLADLLARREEYAARDGEAAAEEFFWAEQNARLVA  171

Query  252  DAERYYKAMYYSSASSWTL-----RDTHMFDTLRRLFRHKPAGAKAIVWAHNSHCGDARY  306
            +AERYY+AM      SW L     RD HM + L  L  H+  G K +VWAHNSH GDAR 
Sbjct  172  NAERYYRAM-RGRDESWNLRLFALRDRHMAENLEWLLEHR--GGKIVVWAHNSHIGDARA  228

Query  307  TSMGTRRNEVNIGQLIRENFGRENVAILGCGTHTGTVAAAHEWDDDMQVMKVRPSRDDSW  366
            T MG RR E+N GQL+RE +G +    +G GT TGTVAAA +W   M+VM V P    S 
Sbjct  229  TDMGYRRGELNAGQLLRERYGDD-YYAIGFGTGTGTVAAADDWGGPMEVMTVPPPPPGSL  287

Query  367  ETIAHDTGIPSFVIDLRKEHLDPALRTAMAAENSRLERFIGVIYRPDTERISHYSQAYLH  426
            E + H  G                                                A L 
Sbjct  288  EALLHAAG------------------------------------------------AVLA  299

Query  427  NQFDAYIWFDVT  438
            +QFDA I+ D T
Sbjct  300  DQFDALIFIDET  311



Lambda      K        H        a         alpha
   0.321    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00006955

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428330 pfam05139, Erythro_esteras, Erythromycin esterase. Thi...  391     7e-136


>CDD:428330 pfam05139, Erythro_esteras, Erythromycin esterase.  This family 
includes erythromycin esterase enzymes that confer resistance 
to the erythromycin antibiotic.
Length=311

 Score = 391 bits (1007),  Expect = 7e-136, Method: Composition-based stats.
 Identities = 157/372 (42%), Positives = 191/372 (51%), Gaps = 68/372 (18%)

Query  74   IEQHGYTMVALEADWPDAEAIDRYVRQRPGPKAGIGGKARDLEPFKRFPTWMWRNREMQD  133
            +E+HG+T VALEADWPDA  +DRYVR   G               +RFP WMWRN E+ D
Sbjct  1    VEEHGFTAVALEADWPDALRVDRYVRGGTGDPREAA---------RRFPFWMWRNEEVLD  51

Query  134  LVEWMRNRNAKLPNEKKAGVYGLDLYSMGASIRAVIDYLDRVDPPAGKEARRRYGCLQPW  193
            LVEW+R  NA  P     G YGLDLYS+  S+ AV+DYLDRVDP     AR RY CL P+
Sbjct  52   LVEWLREYNADRPGLPPVGFYGLDLYSLRESLDAVLDYLDRVDPELAGRARERYACLAPF  111

Query  194  VDEPS-AYGLASLRGMEDCESGVLQMLRDLLDKRLQYAQHD-VRDGEEFHSGEQNAFVVR  251
             ++P  A        +  CE  V+ +L DLL +R +YA  D     EEF   EQNA +V 
Sbjct  112  GEDPQRAAASGPAALLRSCEDDVVALLADLLARREEYAARDGEAAAEEFFWAEQNARLVA  171

Query  252  DAERYYKAMYYSSASSWTL-----RDTHMFDTLRRLFRHKPAGAKAIVWAHNSHCGDARY  306
            +AERYY+AM      SW L     RD HM + L  L  H+  G K +VWAHNSH GDAR 
Sbjct  172  NAERYYRAM-RGRDESWNLRLFALRDRHMAENLEWLLEHR--GGKIVVWAHNSHIGDARA  228

Query  307  TSMGTRRNEVNIGQLIRENFGRENVAILGCGTHTGTVAAAHEWDDDMQVMKVRPSRDDSW  366
            T MG RR E+N GQL+RE +G +    +G GT TGTVAAA +W   M+VM V P    S 
Sbjct  229  TDMGYRRGELNAGQLLRERYGDD-YYAIGFGTGTGTVAAADDWGGPMEVMTVPPPPPGSL  287

Query  367  ETIAHDTGIPSFVIDLRKEHLDPALRTAMAAENSRLERFIGVIYRPDTERISHYSQAYLH  426
            E + H  G                                                A L 
Sbjct  288  EALLHAAG------------------------------------------------AVLA  299

Query  427  NQFDAYIWFDVT  438
            +QFDA I+ D T
Sbjct  300  DQFDALIFIDET  311



Lambda      K        H        a         alpha
   0.321    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00001053

Length=404


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00001054

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00001059

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  119     5e-34


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 119 bits (301),  Expect = 5e-34, Method: Composition-based stats.
 Identities = 45/63 (71%), Positives = 51/63 (81%), Gaps = 0/63 (0%)

Query  287  DYYKILGVSKDASESEIKKAYRKLAIQYHPDKNRDGEAGDEKFKEIGEAYETLIDPQKRA  346
            DYY+ILGVS DAS+ EIKKAYRKLA++YHPDKN      +EKFKEI EAYE L DP+KRA
Sbjct  1    DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRA  60

Query  347  AYD  349
             YD
Sbjct  61   IYD  63



Lambda      K        H        a         alpha
   0.315    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00006956

Length=998
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  105     4e-26
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            99.9    8e-24


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 105 bits (265),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 100/278 (36%), Gaps = 73/278 (26%)

Query  51   VVEKYLSEGGFAHVYVVRLSQPVDGSDRAVLKRVAVP--DKAALANMRTEVETMKKLKGH  108
             V + L  G F  VY  +     D      +K++      K    N+  E++ +KKL  H
Sbjct  2    EVLRKLGSGSFGTVYKAKH---RDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLN-H  57

Query  109  RHIVKYIDSHASQLRGGGYEVFLLMEFCSGGGLIDFMNTRLQNRLTEPEIIKIFSDVAEG  168
             +IV+  D+   +       ++L++E+  GG L D ++ +     +E E   I   + EG
Sbjct  58   PNIVRLYDAFEDK-----DNLYLVLEYVEGGSLFDLLSEKG--AFSEREAKFIMKQILEG  110

Query  169  VACMHYLKPPLLHRDLKVENVLISFQGNTPLYKLCDFGSAAPPRPAATSAAEGRLIEDDV  228
            +          L           +F G                                 
Sbjct  111  LE-----SGSSLT----------TFVG---------------------------------  122

Query  229  QRHTTLQYRSPEMIDVYRKQPIDEKSDIWALGVLLYKLCYYTTPFE-----EVGQMAILN  283
                T  Y +PE++      P   K D+W+LG +LY+L     PF      E+ ++ I  
Sbjct  123  ----TPWYMAPEVL---GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQ  175

Query  284  ASYKFHSYPPFSDRLKALIAWMLKEHPQKRPTIYEVLR  321
                       S+  K L+  +LK+ P KR T  + L+
Sbjct  176  PYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQ  213


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 99.9 bits (250),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 77/287 (27%), Positives = 121/287 (42%), Gaps = 56/287 (20%)

Query  56   LSEGGFAHVYVVRLSQPVDGSDRAV----LKRVAVPDKAALANMRTEVETMKKLKGHRHI  111
            L EG F  VY   L    + +   V    LK  A  D+    +   E   MKKL  H +I
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGA--DEEEREDFLEEASIMKKLD-HPNI  63

Query  112  VKYIDSHASQLRG---GGYEVFLLMEFCSGGGLIDFMNTRLQNRLTEPEIIKIFSDVAEG  168
            VK +        G    G  ++++ E+  GG L+DF+  + + +LT  +++ +   +A+G
Sbjct  64   VKLL--------GVCTQGEPLYIVTEYMPGGDLLDFL-RKHKRKLTLKDLLSMALQIAKG  114

Query  169  VACMHYL-KPPLLHRDLKVENVLISFQGNTPLYKLCDFGSAAPPRPAATSAAEGRLIEDD  227
               M YL     +HRDL   N L+S      + K+ DFG +             R I DD
Sbjct  115  ---MEYLESKNFVHRDLAARNCLVS---ENLVVKISDFGLS-------------RDIYDD  155

Query  228  ----VQRHTTLQYR--SPEMIDVYRKQPIDEKSDIWALGVLLYKLCYY-TTPF-----EE  275
                 +    L  +  +PE +    K     KSD+W+ GVLL+++      P+     EE
Sbjct  156  DYYRKRGGGKLPIKWMAPESLK-DGK--FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEE  212

Query  276  VGQMAILNASYKFHSYPPFSDRLKALIAWMLKEHPQKRPTIYEVLRE  322
            V  +  L   Y+        D L  L+       P+ RPT  E++ +
Sbjct  213  V--LEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.312    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1277120152


Query= TCONS_00001055

Length=693
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  121     1e-33


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 121 bits (305),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 45/63 (71%), Positives = 51/63 (81%), Gaps = 0/63 (0%)

Query  556  DYYKILGVSKDASESEIKKAYRKLAIQYHPDKNRDGEAGDEKFKEIGEAYETLIDPQKRA  615
            DYY+ILGVS DAS+ EIKKAYRKLA++YHPDKN      +EKFKEI EAYE L DP+KRA
Sbjct  1    DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRA  60

Query  616  AYD  618
             YD
Sbjct  61   IYD  63



Lambda      K        H        a         alpha
   0.311    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 884874000


Query= TCONS_00001056

Length=693
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  121     1e-33


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 121 bits (305),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 45/63 (71%), Positives = 51/63 (81%), Gaps = 0/63 (0%)

Query  556  DYYKILGVSKDASESEIKKAYRKLAIQYHPDKNRDGEAGDEKFKEIGEAYETLIDPQKRA  615
            DYY+ILGVS DAS+ EIKKAYRKLA++YHPDKN      +EKFKEI EAYE L DP+KRA
Sbjct  1    DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRA  60

Query  616  AYD  618
             YD
Sbjct  61   IYD  63



Lambda      K        H        a         alpha
   0.311    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 884874000


Query= TCONS_00001057

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00001058

Length=693
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  121     1e-33


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 121 bits (305),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 45/63 (71%), Positives = 51/63 (81%), Gaps = 0/63 (0%)

Query  556  DYYKILGVSKDASESEIKKAYRKLAIQYHPDKNRDGEAGDEKFKEIGEAYETLIDPQKRA  615
            DYY+ILGVS DAS+ EIKKAYRKLA++YHPDKN      +EKFKEI EAYE L DP+KRA
Sbjct  1    DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRA  60

Query  616  AYD  618
             YD
Sbjct  61   IYD  63



Lambda      K        H        a         alpha
   0.311    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 884874000


Query= TCONS_00006958

Length=965
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28             153     4e-43


>CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28.  
Length=192

 Score = 153 bits (389),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 90/185 (49%), Gaps = 6/185 (3%)

Query  161  AGKGGVLVNAHYDSVSTGYGATDDGVGVVSCLQLIKYFTTPGHVPRRGLVLLFNNGEEDF  220
            A    VL++AHYDSV TG GA D+  GV + L+L +     G  P+R +  LF + EE  
Sbjct  10   APDEVVLLSAHYDSVGTGPGADDNASGVAALLELARVLAA-GQRPKRSVRFLFFDAEEAG  68

Query  221  LNGARVY-SQHPISQLPHTFLNLEGAGAGGRATLFRSSDA---EVTKPYMRAPHPFGSVL  276
            L G+  +   HP  +     +NL+  G+GG A LF+S       + K    A  P+G  L
Sbjct  69   LLGSHHFAKSHPPLKKIRAVINLDMIGSGGPALLFQSGPKGSSLLEKYLKAAAKPYGVTL  128

Query  277  SANGFEAGLISSQTDYVVFEGDLGLRGLDVAFMEPRARYHTDEDDARHTSLASVWHMLSA  336
            + + F+      ++D+  F    G+ GLD+AF +   RYHT  D   +    ++  +   
Sbjct  129  AEDPFQERGGPGRSDHAPFI-KAGIPGLDLAFTDFGYRYHTPADTIDNIDPGTLQRIGDL  187

Query  337  AVATT  341
             +A  
Sbjct  188  VLALV  192



Lambda      K        H        a         alpha
   0.321    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1230396244


Query= TCONS_00001061

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00001062

Length=998
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  105     4e-26
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            99.9    8e-24


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 105 bits (265),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 100/278 (36%), Gaps = 73/278 (26%)

Query  51   VVEKYLSEGGFAHVYVVRLSQPVDGSDRAVLKRVAVP--DKAALANMRTEVETMKKLKGH  108
             V + L  G F  VY  +     D      +K++      K    N+  E++ +KKL  H
Sbjct  2    EVLRKLGSGSFGTVYKAKH---RDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLN-H  57

Query  109  RHIVKYIDSHASQLRGGGYEVFLLMEFCSGGGLIDFMNTRLQNRLTEPEIIKIFSDVAEG  168
             +IV+  D+   +       ++L++E+  GG L D ++ +     +E E   I   + EG
Sbjct  58   PNIVRLYDAFEDK-----DNLYLVLEYVEGGSLFDLLSEKG--AFSEREAKFIMKQILEG  110

Query  169  VACMHYLKPPLLHRDLKVENVLISFQGNTPLYKLCDFGSAAPPRPAATSAAEGRLIEDDV  228
            +          L           +F G                                 
Sbjct  111  LE-----SGSSLT----------TFVG---------------------------------  122

Query  229  QRHTTLQYRSPEMIDVYRKQPIDEKSDIWALGVLLYKLCYYTTPFE-----EVGQMAILN  283
                T  Y +PE++      P   K D+W+LG +LY+L     PF      E+ ++ I  
Sbjct  123  ----TPWYMAPEVL---GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQ  175

Query  284  ASYKFHSYPPFSDRLKALIAWMLKEHPQKRPTIYEVLR  321
                       S+  K L+  +LK+ P KR T  + L+
Sbjct  176  PYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQ  213


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 99.9 bits (250),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 77/287 (27%), Positives = 121/287 (42%), Gaps = 56/287 (20%)

Query  56   LSEGGFAHVYVVRLSQPVDGSDRAV----LKRVAVPDKAALANMRTEVETMKKLKGHRHI  111
            L EG F  VY   L    + +   V    LK  A  D+    +   E   MKKL  H +I
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGA--DEEEREDFLEEASIMKKLD-HPNI  63

Query  112  VKYIDSHASQLRG---GGYEVFLLMEFCSGGGLIDFMNTRLQNRLTEPEIIKIFSDVAEG  168
            VK +        G    G  ++++ E+  GG L+DF+  + + +LT  +++ +   +A+G
Sbjct  64   VKLL--------GVCTQGEPLYIVTEYMPGGDLLDFL-RKHKRKLTLKDLLSMALQIAKG  114

Query  169  VACMHYL-KPPLLHRDLKVENVLISFQGNTPLYKLCDFGSAAPPRPAATSAAEGRLIEDD  227
               M YL     +HRDL   N L+S      + K+ DFG +             R I DD
Sbjct  115  ---MEYLESKNFVHRDLAARNCLVS---ENLVVKISDFGLS-------------RDIYDD  155

Query  228  ----VQRHTTLQYR--SPEMIDVYRKQPIDEKSDIWALGVLLYKLCYY-TTPF-----EE  275
                 +    L  +  +PE +    K     KSD+W+ GVLL+++      P+     EE
Sbjct  156  DYYRKRGGGKLPIKWMAPESLK-DGK--FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEE  212

Query  276  VGQMAILNASYKFHSYPPFSDRLKALIAWMLKEHPQKRPTIYEVLRE  322
            V  +  L   Y+        D L  L+       P+ RPT  E++ +
Sbjct  213  V--LEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.312    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1277120152


Query= TCONS_00006959

Length=827
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  73.8    3e-15


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 73.8 bits (182),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 27/94 (29%), Positives = 43/94 (46%), Gaps = 8/94 (9%)

Query  62   TLQYRSPEMIDVYRKQPIDEKSDIWALGVLLYKLCYYTTPFE-----EVGQMAILNASYK  116
            T  Y +PE++      P   K D+W+LG +LY+L     PF      E+ ++ I      
Sbjct  123  TPWYMAPEVL---GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAF  179

Query  117  FHSYPPFSDRLKALIAWMLKEHPQKRPTIYEVLR  150
                   S+  K L+  +LK+ P KR T  + L+
Sbjct  180  PELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQ  213



Lambda      K        H        a         alpha
   0.311    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050796248


Query= TCONS_00001064

Length=998
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  105     4e-26
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            99.9    8e-24


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 105 bits (265),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 100/278 (36%), Gaps = 73/278 (26%)

Query  51   VVEKYLSEGGFAHVYVVRLSQPVDGSDRAVLKRVAVP--DKAALANMRTEVETMKKLKGH  108
             V + L  G F  VY  +     D      +K++      K    N+  E++ +KKL  H
Sbjct  2    EVLRKLGSGSFGTVYKAKH---RDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLN-H  57

Query  109  RHIVKYIDSHASQLRGGGYEVFLLMEFCSGGGLIDFMNTRLQNRLTEPEIIKIFSDVAEG  168
             +IV+  D+   +       ++L++E+  GG L D ++ +     +E E   I   + EG
Sbjct  58   PNIVRLYDAFEDK-----DNLYLVLEYVEGGSLFDLLSEKG--AFSEREAKFIMKQILEG  110

Query  169  VACMHYLKPPLLHRDLKVENVLISFQGNTPLYKLCDFGSAAPPRPAATSAAEGRLIEDDV  228
            +          L           +F G                                 
Sbjct  111  LE-----SGSSLT----------TFVG---------------------------------  122

Query  229  QRHTTLQYRSPEMIDVYRKQPIDEKSDIWALGVLLYKLCYYTTPFE-----EVGQMAILN  283
                T  Y +PE++      P   K D+W+LG +LY+L     PF      E+ ++ I  
Sbjct  123  ----TPWYMAPEVL---GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQ  175

Query  284  ASYKFHSYPPFSDRLKALIAWMLKEHPQKRPTIYEVLR  321
                       S+  K L+  +LK+ P KR T  + L+
Sbjct  176  PYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQ  213


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 99.9 bits (250),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 77/287 (27%), Positives = 121/287 (42%), Gaps = 56/287 (20%)

Query  56   LSEGGFAHVYVVRLSQPVDGSDRAV----LKRVAVPDKAALANMRTEVETMKKLKGHRHI  111
            L EG F  VY   L    + +   V    LK  A  D+    +   E   MKKL  H +I
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGA--DEEEREDFLEEASIMKKLD-HPNI  63

Query  112  VKYIDSHASQLRG---GGYEVFLLMEFCSGGGLIDFMNTRLQNRLTEPEIIKIFSDVAEG  168
            VK +        G    G  ++++ E+  GG L+DF+  + + +LT  +++ +   +A+G
Sbjct  64   VKLL--------GVCTQGEPLYIVTEYMPGGDLLDFL-RKHKRKLTLKDLLSMALQIAKG  114

Query  169  VACMHYL-KPPLLHRDLKVENVLISFQGNTPLYKLCDFGSAAPPRPAATSAAEGRLIEDD  227
               M YL     +HRDL   N L+S      + K+ DFG +             R I DD
Sbjct  115  ---MEYLESKNFVHRDLAARNCLVS---ENLVVKISDFGLS-------------RDIYDD  155

Query  228  ----VQRHTTLQYR--SPEMIDVYRKQPIDEKSDIWALGVLLYKLCYY-TTPF-----EE  275
                 +    L  +  +PE +    K     KSD+W+ GVLL+++      P+     EE
Sbjct  156  DYYRKRGGGKLPIKWMAPESLK-DGK--FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEE  212

Query  276  VGQMAILNASYKFHSYPPFSDRLKALIAWMLKEHPQKRPTIYEVLRE  322
            V  +  L   Y+        D L  L+       P+ RPT  E++ +
Sbjct  213  V--LEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.312    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1277120152


Query= TCONS_00001063

Length=998
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  105     4e-26
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            99.9    8e-24


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 105 bits (265),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 100/278 (36%), Gaps = 73/278 (26%)

Query  51   VVEKYLSEGGFAHVYVVRLSQPVDGSDRAVLKRVAVP--DKAALANMRTEVETMKKLKGH  108
             V + L  G F  VY  +     D      +K++      K    N+  E++ +KKL  H
Sbjct  2    EVLRKLGSGSFGTVYKAKH---RDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLN-H  57

Query  109  RHIVKYIDSHASQLRGGGYEVFLLMEFCSGGGLIDFMNTRLQNRLTEPEIIKIFSDVAEG  168
             +IV+  D+   +       ++L++E+  GG L D ++ +     +E E   I   + EG
Sbjct  58   PNIVRLYDAFEDK-----DNLYLVLEYVEGGSLFDLLSEKG--AFSEREAKFIMKQILEG  110

Query  169  VACMHYLKPPLLHRDLKVENVLISFQGNTPLYKLCDFGSAAPPRPAATSAAEGRLIEDDV  228
            +          L           +F G                                 
Sbjct  111  LE-----SGSSLT----------TFVG---------------------------------  122

Query  229  QRHTTLQYRSPEMIDVYRKQPIDEKSDIWALGVLLYKLCYYTTPFE-----EVGQMAILN  283
                T  Y +PE++      P   K D+W+LG +LY+L     PF      E+ ++ I  
Sbjct  123  ----TPWYMAPEVL---GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQ  175

Query  284  ASYKFHSYPPFSDRLKALIAWMLKEHPQKRPTIYEVLR  321
                       S+  K L+  +LK+ P KR T  + L+
Sbjct  176  PYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQ  213


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 99.9 bits (250),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 77/287 (27%), Positives = 121/287 (42%), Gaps = 56/287 (20%)

Query  56   LSEGGFAHVYVVRLSQPVDGSDRAV----LKRVAVPDKAALANMRTEVETMKKLKGHRHI  111
            L EG F  VY   L    + +   V    LK  A  D+    +   E   MKKL  H +I
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGA--DEEEREDFLEEASIMKKLD-HPNI  63

Query  112  VKYIDSHASQLRG---GGYEVFLLMEFCSGGGLIDFMNTRLQNRLTEPEIIKIFSDVAEG  168
            VK +        G    G  ++++ E+  GG L+DF+  + + +LT  +++ +   +A+G
Sbjct  64   VKLL--------GVCTQGEPLYIVTEYMPGGDLLDFL-RKHKRKLTLKDLLSMALQIAKG  114

Query  169  VACMHYL-KPPLLHRDLKVENVLISFQGNTPLYKLCDFGSAAPPRPAATSAAEGRLIEDD  227
               M YL     +HRDL   N L+S      + K+ DFG +             R I DD
Sbjct  115  ---MEYLESKNFVHRDLAARNCLVS---ENLVVKISDFGLS-------------RDIYDD  155

Query  228  ----VQRHTTLQYR--SPEMIDVYRKQPIDEKSDIWALGVLLYKLCYY-TTPF-----EE  275
                 +    L  +  +PE +    K     KSD+W+ GVLL+++      P+     EE
Sbjct  156  DYYRKRGGGKLPIKWMAPESLK-DGK--FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEE  212

Query  276  VGQMAILNASYKFHSYPPFSDRLKALIAWMLKEHPQKRPTIYEVLRE  322
            V  +  L   Y+        D L  L+       P+ RPT  E++ +
Sbjct  213  V--LEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.312    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0851    0.140     1.90     42.6     43.6 

Effective search space used: 1277120152


Query= TCONS_00001065

Length=998
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  105     4e-26
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            99.9    8e-24


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 105 bits (265),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 100/278 (36%), Gaps = 73/278 (26%)

Query  51   VVEKYLSEGGFAHVYVVRLSQPVDGSDRAVLKRVAVP--DKAALANMRTEVETMKKLKGH  108
             V + L  G F  VY  +     D      +K++      K    N+  E++ +KKL  H
Sbjct  2    EVLRKLGSGSFGTVYKAKH---RDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLN-H  57

Query  109  RHIVKYIDSHASQLRGGGYEVFLLMEFCSGGGLIDFMNTRLQNRLTEPEIIKIFSDVAEG  168
             +IV+  D+   +       ++L++E+  GG L D ++ +     +E E   I   + EG
Sbjct  58   PNIVRLYDAFEDK-----DNLYLVLEYVEGGSLFDLLSEKG--AFSEREAKFIMKQILEG  110

Query  169  VACMHYLKPPLLHRDLKVENVLISFQGNTPLYKLCDFGSAAPPRPAATSAAEGRLIEDDV  228
            +          L           +F G                                 
Sbjct  111  LE-----SGSSLT----------TFVG---------------------------------  122

Query  229  QRHTTLQYRSPEMIDVYRKQPIDEKSDIWALGVLLYKLCYYTTPFE-----EVGQMAILN  283
                T  Y +PE++      P   K D+W+LG +LY+L     PF      E+ ++ I  
Sbjct  123  ----TPWYMAPEVL---GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQ  175

Query  284  ASYKFHSYPPFSDRLKALIAWMLKEHPQKRPTIYEVLR  321
                       S+  K L+  +LK+ P KR T  + L+
Sbjct  176  PYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQ  213


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 99.9 bits (250),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 77/287 (27%), Positives = 121/287 (42%), Gaps = 56/287 (20%)

Query  56   LSEGGFAHVYVVRLSQPVDGSDRAV----LKRVAVPDKAALANMRTEVETMKKLKGHRHI  111
            L EG F  VY   L    + +   V    LK  A  D+    +   E   MKKL  H +I
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGA--DEEEREDFLEEASIMKKLD-HPNI  63

Query  112  VKYIDSHASQLRG---GGYEVFLLMEFCSGGGLIDFMNTRLQNRLTEPEIIKIFSDVAEG  168
            VK +        G    G  ++++ E+  GG L+DF+  + + +LT  +++ +   +A+G
Sbjct  64   VKLL--------GVCTQGEPLYIVTEYMPGGDLLDFL-RKHKRKLTLKDLLSMALQIAKG  114

Query  169  VACMHYL-KPPLLHRDLKVENVLISFQGNTPLYKLCDFGSAAPPRPAATSAAEGRLIEDD  227
               M YL     +HRDL   N L+S      + K+ DFG +             R I DD
Sbjct  115  ---MEYLESKNFVHRDLAARNCLVS---ENLVVKISDFGLS-------------RDIYDD  155

Query  228  ----VQRHTTLQYR--SPEMIDVYRKQPIDEKSDIWALGVLLYKLCYY-TTPF-----EE  275
                 +    L  +  +PE +    K     KSD+W+ GVLL+++      P+     EE
Sbjct  156  DYYRKRGGGKLPIKWMAPESLK-DGK--FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEE  212

Query  276  VGQMAILNASYKFHSYPPFSDRLKALIAWMLKEHPQKRPTIYEVLRE  322
            V  +  L   Y+        D L  L+       P+ RPT  E++ +
Sbjct  213  V--LEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.312    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1277120152


Query= TCONS_00006960

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            97.2    3e-24


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 97.2 bits (243),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 97/228 (43%), Gaps = 48/228 (21%)

Query  56   LSEGGFAHVYVVRLSQPVDGSDRAV----LKRVAVPDKAALANMRTEVETMKKLKGHRHI  111
            L EG F  VY   L    + +   V    LK  A  D+    +   E   MKKL  H +I
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGA--DEEEREDFLEEASIMKKLD-HPNI  63

Query  112  VKYIDSHASQLRG---GGYEVFLLMEFCSGGGLIDFMNTRLQNRLTEPEIIKIFSDVAEG  168
            VK +        G    G  ++++ E+  GG L+DF+  + + +LT  +++ +   +A+G
Sbjct  64   VKLL--------GVCTQGEPLYIVTEYMPGGDLLDFL-RKHKRKLTLKDLLSMALQIAKG  114

Query  169  VACMHYL-KPPLLHRDLKVENVLISFQGNTPLYKLCDFGSAAPPRPAATSAAEGRLIEDD  227
               M YL     +HRDL   N L+S      + K+ DFG +             R I DD
Sbjct  115  ---MEYLESKNFVHRDLAARNCLVS---ENLVVKISDFGLS-------------RDIYDD  155

Query  228  VQRHTTLQ------YRSPEMIDVYRKQPIDEKSDIWALGVLLYKLCYY  269
                          + +PE +    K     KSD+W+ GVLL+++   
Sbjct  156  DYYRKRGGGKLPIKWMAPESLK-DGK--FTSKSDVWSFGVLLWEIFTL  200



Lambda      K        H        a         alpha
   0.320    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00001066

Length=998
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  105     4e-26
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            99.9    8e-24


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 105 bits (265),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 100/278 (36%), Gaps = 73/278 (26%)

Query  51   VVEKYLSEGGFAHVYVVRLSQPVDGSDRAVLKRVAVP--DKAALANMRTEVETMKKLKGH  108
             V + L  G F  VY  +     D      +K++      K    N+  E++ +KKL  H
Sbjct  2    EVLRKLGSGSFGTVYKAKH---RDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLN-H  57

Query  109  RHIVKYIDSHASQLRGGGYEVFLLMEFCSGGGLIDFMNTRLQNRLTEPEIIKIFSDVAEG  168
             +IV+  D+   +       ++L++E+  GG L D ++ +     +E E   I   + EG
Sbjct  58   PNIVRLYDAFEDK-----DNLYLVLEYVEGGSLFDLLSEKG--AFSEREAKFIMKQILEG  110

Query  169  VACMHYLKPPLLHRDLKVENVLISFQGNTPLYKLCDFGSAAPPRPAATSAAEGRLIEDDV  228
            +          L           +F G                                 
Sbjct  111  LE-----SGSSLT----------TFVG---------------------------------  122

Query  229  QRHTTLQYRSPEMIDVYRKQPIDEKSDIWALGVLLYKLCYYTTPFE-----EVGQMAILN  283
                T  Y +PE++      P   K D+W+LG +LY+L     PF      E+ ++ I  
Sbjct  123  ----TPWYMAPEVL---GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQ  175

Query  284  ASYKFHSYPPFSDRLKALIAWMLKEHPQKRPTIYEVLR  321
                       S+  K L+  +LK+ P KR T  + L+
Sbjct  176  PYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQ  213


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 99.9 bits (250),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 77/287 (27%), Positives = 121/287 (42%), Gaps = 56/287 (20%)

Query  56   LSEGGFAHVYVVRLSQPVDGSDRAV----LKRVAVPDKAALANMRTEVETMKKLKGHRHI  111
            L EG F  VY   L    + +   V    LK  A  D+    +   E   MKKL  H +I
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGA--DEEEREDFLEEASIMKKLD-HPNI  63

Query  112  VKYIDSHASQLRG---GGYEVFLLMEFCSGGGLIDFMNTRLQNRLTEPEIIKIFSDVAEG  168
            VK +        G    G  ++++ E+  GG L+DF+  + + +LT  +++ +   +A+G
Sbjct  64   VKLL--------GVCTQGEPLYIVTEYMPGGDLLDFL-RKHKRKLTLKDLLSMALQIAKG  114

Query  169  VACMHYL-KPPLLHRDLKVENVLISFQGNTPLYKLCDFGSAAPPRPAATSAAEGRLIEDD  227
               M YL     +HRDL   N L+S      + K+ DFG +             R I DD
Sbjct  115  ---MEYLESKNFVHRDLAARNCLVS---ENLVVKISDFGLS-------------RDIYDD  155

Query  228  ----VQRHTTLQYR--SPEMIDVYRKQPIDEKSDIWALGVLLYKLCYY-TTPF-----EE  275
                 +    L  +  +PE +    K     KSD+W+ GVLL+++      P+     EE
Sbjct  156  DYYRKRGGGKLPIKWMAPESLK-DGK--FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEE  212

Query  276  VGQMAILNASYKFHSYPPFSDRLKALIAWMLKEHPQKRPTIYEVLRE  322
            V  +  L   Y+        D L  L+       P+ RPT  E++ +
Sbjct  213  V--LEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.312    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1277120152


Query= TCONS_00001067

Length=998
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  105     4e-26
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            99.9    8e-24


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 105 bits (265),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 100/278 (36%), Gaps = 73/278 (26%)

Query  51   VVEKYLSEGGFAHVYVVRLSQPVDGSDRAVLKRVAVP--DKAALANMRTEVETMKKLKGH  108
             V + L  G F  VY  +     D      +K++      K    N+  E++ +KKL  H
Sbjct  2    EVLRKLGSGSFGTVYKAKH---RDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLN-H  57

Query  109  RHIVKYIDSHASQLRGGGYEVFLLMEFCSGGGLIDFMNTRLQNRLTEPEIIKIFSDVAEG  168
             +IV+  D+   +       ++L++E+  GG L D ++ +     +E E   I   + EG
Sbjct  58   PNIVRLYDAFEDK-----DNLYLVLEYVEGGSLFDLLSEKG--AFSEREAKFIMKQILEG  110

Query  169  VACMHYLKPPLLHRDLKVENVLISFQGNTPLYKLCDFGSAAPPRPAATSAAEGRLIEDDV  228
            +          L           +F G                                 
Sbjct  111  LE-----SGSSLT----------TFVG---------------------------------  122

Query  229  QRHTTLQYRSPEMIDVYRKQPIDEKSDIWALGVLLYKLCYYTTPFE-----EVGQMAILN  283
                T  Y +PE++      P   K D+W+LG +LY+L     PF      E+ ++ I  
Sbjct  123  ----TPWYMAPEVL---GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQ  175

Query  284  ASYKFHSYPPFSDRLKALIAWMLKEHPQKRPTIYEVLR  321
                       S+  K L+  +LK+ P KR T  + L+
Sbjct  176  PYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQ  213


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 99.9 bits (250),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 77/287 (27%), Positives = 121/287 (42%), Gaps = 56/287 (20%)

Query  56   LSEGGFAHVYVVRLSQPVDGSDRAV----LKRVAVPDKAALANMRTEVETMKKLKGHRHI  111
            L EG F  VY   L    + +   V    LK  A  D+    +   E   MKKL  H +I
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGA--DEEEREDFLEEASIMKKLD-HPNI  63

Query  112  VKYIDSHASQLRG---GGYEVFLLMEFCSGGGLIDFMNTRLQNRLTEPEIIKIFSDVAEG  168
            VK +        G    G  ++++ E+  GG L+DF+  + + +LT  +++ +   +A+G
Sbjct  64   VKLL--------GVCTQGEPLYIVTEYMPGGDLLDFL-RKHKRKLTLKDLLSMALQIAKG  114

Query  169  VACMHYL-KPPLLHRDLKVENVLISFQGNTPLYKLCDFGSAAPPRPAATSAAEGRLIEDD  227
               M YL     +HRDL   N L+S      + K+ DFG +             R I DD
Sbjct  115  ---MEYLESKNFVHRDLAARNCLVS---ENLVVKISDFGLS-------------RDIYDD  155

Query  228  ----VQRHTTLQYR--SPEMIDVYRKQPIDEKSDIWALGVLLYKLCYY-TTPF-----EE  275
                 +    L  +  +PE +    K     KSD+W+ GVLL+++      P+     EE
Sbjct  156  DYYRKRGGGKLPIKWMAPESLK-DGK--FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEE  212

Query  276  VGQMAILNASYKFHSYPPFSDRLKALIAWMLKEHPQKRPTIYEVLRE  322
            V  +  L   Y+        D L  L+       P+ RPT  E++ +
Sbjct  213  V--LEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.312    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1277120152


Query= TCONS_00001068

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            97.2    3e-24


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 97.2 bits (243),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 97/228 (43%), Gaps = 48/228 (21%)

Query  56   LSEGGFAHVYVVRLSQPVDGSDRAV----LKRVAVPDKAALANMRTEVETMKKLKGHRHI  111
            L EG F  VY   L    + +   V    LK  A  D+    +   E   MKKL  H +I
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGA--DEEEREDFLEEASIMKKLD-HPNI  63

Query  112  VKYIDSHASQLRG---GGYEVFLLMEFCSGGGLIDFMNTRLQNRLTEPEIIKIFSDVAEG  168
            VK +        G    G  ++++ E+  GG L+DF+  + + +LT  +++ +   +A+G
Sbjct  64   VKLL--------GVCTQGEPLYIVTEYMPGGDLLDFL-RKHKRKLTLKDLLSMALQIAKG  114

Query  169  VACMHYL-KPPLLHRDLKVENVLISFQGNTPLYKLCDFGSAAPPRPAATSAAEGRLIEDD  227
               M YL     +HRDL   N L+S      + K+ DFG +             R I DD
Sbjct  115  ---MEYLESKNFVHRDLAARNCLVS---ENLVVKISDFGLS-------------RDIYDD  155

Query  228  VQRHTTLQ------YRSPEMIDVYRKQPIDEKSDIWALGVLLYKLCYY  269
                          + +PE +    K     KSD+W+ GVLL+++   
Sbjct  156  DYYRKRGGGKLPIKWMAPESLK-DGK--FTSKSDVWSFGVLLWEIFTL  200



Lambda      K        H        a         alpha
   0.320    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00001069

Length=618


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 786069128


Query= TCONS_00001072

Length=965
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28             153     4e-43


>CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28.  
Length=192

 Score = 153 bits (389),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 90/185 (49%), Gaps = 6/185 (3%)

Query  161  AGKGGVLVNAHYDSVSTGYGATDDGVGVVSCLQLIKYFTTPGHVPRRGLVLLFNNGEEDF  220
            A    VL++AHYDSV TG GA D+  GV + L+L +     G  P+R +  LF + EE  
Sbjct  10   APDEVVLLSAHYDSVGTGPGADDNASGVAALLELARVLAA-GQRPKRSVRFLFFDAEEAG  68

Query  221  LNGARVY-SQHPISQLPHTFLNLEGAGAGGRATLFRSSDA---EVTKPYMRAPHPFGSVL  276
            L G+  +   HP  +     +NL+  G+GG A LF+S       + K    A  P+G  L
Sbjct  69   LLGSHHFAKSHPPLKKIRAVINLDMIGSGGPALLFQSGPKGSSLLEKYLKAAAKPYGVTL  128

Query  277  SANGFEAGLISSQTDYVVFEGDLGLRGLDVAFMEPRARYHTDEDDARHTSLASVWHMLSA  336
            + + F+      ++D+  F    G+ GLD+AF +   RYHT  D   +    ++  +   
Sbjct  129  AEDPFQERGGPGRSDHAPFI-KAGIPGLDLAFTDFGYRYHTPADTIDNIDPGTLQRIGDL  187

Query  337  AVATT  341
             +A  
Sbjct  188  VLALV  192



Lambda      K        H        a         alpha
   0.321    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1230396244


Query= TCONS_00001073

Length=152
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 92.0    3e-23


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 92.0 bits (229),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 41/130 (32%), Positives = 58/130 (45%), Gaps = 22/130 (17%)

Query  9    VHVYGMTETYGPITKGYYMPQWDQLPAEEKYKKMARQGHGFVTSLP---VRVIKTDVPEG  65
            V+ YG+TET G +T          LP +E  + +   G      LP   V+++  D   G
Sbjct  306  VNGYGLTETTGVVTTP--------LPLDEDLRSLGSVG----RPLPGTEVKIV--DDETG  351

Query  66   TIIDVQRDGKEIGEIAFVGNICSRGYYKDPEATRKLF-AGGVLHSGDLAVWHPDGAVQIL  124
               +    G E GE+   G    +GY  DPE T + F   G   +GDL     DG ++I+
Sbjct  352  ---EPVPPG-EPGELCVRGPGVMKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYLEIV  407

Query  125  DRAKDIIISG  134
             R KD I  G
Sbjct  408  GRKKDQIKLG  417



Lambda      K        H        a         alpha
   0.321    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00001074

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.150    0.504    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00001075

Length=143
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459856 pfam00572, Ribosomal_L13, Ribosomal protein L13            56.0    1e-11


>CDD:459856 pfam00572, Ribosomal_L13, Ribosomal protein L13.  
Length=119

 Score = 56.0 bits (136),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 18/43 (42%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query  40   GPFHFRAPSRIFYKAVRGMIPHKTPRGAAALERLKVFEGVPPP  82
               H R P R+  +AVRGM+P    R    L+RLKV+ G   P
Sbjct  78   KKLHERKPERVIRRAVRGMLPKNKLR-RERLKRLKVYAGSEHP  119



Lambda      K        H        a         alpha
   0.327    0.142    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00001076

Length=370


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00006961

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  90.2    6e-23


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 90.2 bits (225),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 3/66 (5%)

Query  8   DPYAVLGVQKDATLAEIKSAHRKLVLKCHPDKVKDESQRSKAQEEFQQVQQAYELLSDET  67
           D Y +LGV  DA+  EIK A+RKL LK HPDK   + +   A+E+F+++ +AYE+LSD  
Sbjct  1   DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPE---AEEKFKEINEAYEVLSDPE  57

Query  68  KRTKYD  73
           KR  YD
Sbjct  58  KRAIYD  63



Lambda      K        H        a         alpha
   0.307    0.121    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 741236288


Query= TCONS_00006962

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  90.2    6e-23


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 90.2 bits (225),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 3/66 (5%)

Query  8   DPYAVLGVQKDATLAEIKSAHRKLVLKCHPDKVKDESQRSKAQEEFQQVQQAYELLSDET  67
           D Y +LGV  DA+  EIK A+RKL LK HPDK   + +   A+E+F+++ +AYE+LSD  
Sbjct  1   DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPE---AEEKFKEINEAYEVLSDPE  57

Query  68  KRTKYD  73
           KR  YD
Sbjct  58  KRAIYD  63



Lambda      K        H        a         alpha
   0.307    0.121    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 741236288


Query= TCONS_00001078

Length=488


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.120    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 601084202


Query= TCONS_00001079

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427117 pfam03062, MBOAT, MBOAT, membrane-bound O-acyltransfer...  126     7e-33


>CDD:427117 pfam03062, MBOAT, MBOAT, membrane-bound O-acyltransferase family. 
 The MBOAT (membrane bound O-acyl transferase) family of 
membrane proteins contains a variety of acyltransferase enzymes. 
A conserved histidine has been suggested to be the active 
site residue.
Length=334

 Score = 126 bits (319),  Expect = 7e-33, Method: Composition-based stats.
 Identities = 72/289 (25%), Positives = 110/289 (38%), Gaps = 24/289 (8%)

Query  307  QHSNHARSKSVEEVREDLASELTSPLGCVTYPQNLSLTNYIDY----IFCPTLCYE--LE  360
            Q                   +L S       P  L    Y+ +    +  P   Y   + 
Sbjct  48   QKELLKLLLFSYRPVSLSFRKLASAAALSQDPSLLEYLGYVFFYPGLLVGPIFSYSDYMS  107

Query  361  YPRNKNRQWTELAAKALAVFGCIFLLTLTSEEFIVPVLSEASAQLPLVHGAPDKALILAE  420
            +PR+   +W     + LA       L LT    I  +LS    +          A +L  
Sbjct  108  FPRDPLFRWLYYVKRNLAPALGALFLGLTYLILIQYLLSHLPDKDFSKFKFLSYAFLLRF  167

Query  421  TISMLLFPFMITFLLVFLVIFEYVLGAFAE------------ITRFADRQFYSDWWNSSD  468
            ++ M     ++  L +FL+IF+++   FAE              R A    Y  W N+  
Sbjct  168  SVIMR---ILLGLLWLFLLIFDFLGWLFAEGEDILFGLGFNGWDRVAPENIYRCWENAVS  224

Query  469  WLEFSREWNIPVHHFLRRHVYFPSLSYFSQP--VAMFITFLVSSVFHEL-VMSCITKKLR  525
            + EF R WNIPVH +L+R+VY P          +A   TFL S+V+H   +   +   LR
Sbjct  225  FSEFWRAWNIPVHKWLKRYVYKPLGKKGKLNKFLATLATFLFSAVWHGYYLGYLLWFVLR  284

Query  526  GYGFLAMMLQMPIVAVQRSRFLRGKRTLNNVFFWLSMITGLSMMCALYV  574
                LA  L   +V +   +  R +  L+NV FWL    G S+   L +
Sbjct  285  VLLLLAEKLIRRLVRLSFLKTDRRRPNLSNVIFWLGAFLGPSLALLLSL  333



Lambda      K        H        a         alpha
   0.325    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 723303152


Query= TCONS_00001080

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427117 pfam03062, MBOAT, MBOAT, membrane-bound O-acyltransfer...  108     1e-26


>CDD:427117 pfam03062, MBOAT, MBOAT, membrane-bound O-acyltransferase family. 
 The MBOAT (membrane bound O-acyl transferase) family of 
membrane proteins contains a variety of acyltransferase enzymes. 
A conserved histidine has been suggested to be the active 
site residue.
Length=334

 Score = 108 bits (272),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 101/278 (36%), Gaps = 24/278 (9%)

Query  259  QHSNHARSKSVEEVREDLASELTSPLGCVTYPQNLSLTNYIDY----IFCPTLCYE--LE  312
            Q                   +L S       P  L    Y+ +    +  P   Y   + 
Sbjct  48   QKELLKLLLFSYRPVSLSFRKLASAAALSQDPSLLEYLGYVFFYPGLLVGPIFSYSDYMS  107

Query  313  YPRNKNRQWTELAAKALAVFGCIFLLTLTSEEFIVPVLSEASAQLPLVHGAPDKALILAE  372
            +PR+   +W     + LA       L LT    I  +LS    +          A +L  
Sbjct  108  FPRDPLFRWLYYVKRNLAPALGALFLGLTYLILIQYLLSHLPDKDFSKFKFLSYAFLLRF  167

Query  373  TISMLLFPFMITFLLVFLVIFEYVLGAFAE------------ITRFADRQFYSDWWNSSD  420
            ++ M     ++  L +FL+IF+++   FAE              R A    Y  W N+  
Sbjct  168  SVIMR---ILLGLLWLFLLIFDFLGWLFAEGEDILFGLGFNGWDRVAPENIYRCWENAVS  224

Query  421  WLEFSREWNIPVHHFLRRHVYFPSLSYFSQP--VAMFITFLVSSVFHEL-VMSCITKKLR  477
            + EF R WNIPVH +L+R+VY P          +A   TFL S+V+H   +   +   LR
Sbjct  225  FSEFWRAWNIPVHKWLKRYVYKPLGKKGKLNKFLATLATFLFSAVWHGYYLGYLLWFVLR  284

Query  478  GYGFLAMMLQMPIVAVQRSRFLRGKRTLNVRLLSFLIM  515
                LA  L   +V +   +  R +  L+  +      
Sbjct  285  VLLLLAEKLIRRLVRLSFLKTDRRRPNLSNVIFWLGAF  322



Lambda      K        H        a         alpha
   0.326    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 648020248


Query= TCONS_00001081

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427117 pfam03062, MBOAT, MBOAT, membrane-bound O-acyltransfer...  122     1e-31


>CDD:427117 pfam03062, MBOAT, MBOAT, membrane-bound O-acyltransferase family. 
 The MBOAT (membrane bound O-acyl transferase) family of 
membrane proteins contains a variety of acyltransferase enzymes. 
A conserved histidine has been suggested to be the active 
site residue.
Length=334

 Score = 122 bits (309),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 72/289 (25%), Positives = 110/289 (38%), Gaps = 24/289 (8%)

Query  259  QHSNHARSKSVEEVREDLASELTSPLGCVTYPQNLSLTNYIDY----IFCPTLCYE--LE  312
            Q                   +L S       P  L    Y+ +    +  P   Y   + 
Sbjct  48   QKELLKLLLFSYRPVSLSFRKLASAAALSQDPSLLEYLGYVFFYPGLLVGPIFSYSDYMS  107

Query  313  YPRNKNRQWTELAAKALAVFGCIFLLTLTSEEFIVPVLSEASAQLPLVHGAPDKALILAE  372
            +PR+   +W     + LA       L LT    I  +LS    +          A +L  
Sbjct  108  FPRDPLFRWLYYVKRNLAPALGALFLGLTYLILIQYLLSHLPDKDFSKFKFLSYAFLLRF  167

Query  373  TISMLLFPFMITFLLVFLVIFEYVLGAFAE------------ITRFADRQFYSDWWNSSD  420
            ++ M     ++  L +FL+IF+++   FAE              R A    Y  W N+  
Sbjct  168  SVIMR---ILLGLLWLFLLIFDFLGWLFAEGEDILFGLGFNGWDRVAPENIYRCWENAVS  224

Query  421  WLEFSREWNIPVHHFLRRHVYFPSLSYFSQP--VAMFITFLVSSVFHEL-VMSCITKKLR  477
            + EF R WNIPVH +L+R+VY P          +A   TFL S+V+H   +   +   LR
Sbjct  225  FSEFWRAWNIPVHKWLKRYVYKPLGKKGKLNKFLATLATFLFSAVWHGYYLGYLLWFVLR  284

Query  478  GYGFLAMMLQMPIVAVQRSRFLRGKRTLNNVFFWLSMITGLSMMCALYV  526
                LA  L   +V +   +  R +  L+NV FWL    G S+   L +
Sbjct  285  VLLLLAEKLIRRLVRLSFLKTDRRRPNLSNVIFWLGAFLGPSLALLLSL  333



Lambda      K        H        a         alpha
   0.327    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 661646842


Query= TCONS_00006963

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427117 pfam03062, MBOAT, MBOAT, membrane-bound O-acyltransfer...  118     2e-31


>CDD:427117 pfam03062, MBOAT, MBOAT, membrane-bound O-acyltransferase family. 
 The MBOAT (membrane bound O-acyl transferase) family of 
membrane proteins contains a variety of acyltransferase enzymes. 
A conserved histidine has been suggested to be the active 
site residue.
Length=334

 Score = 118 bits (298),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 72/289 (25%), Positives = 110/289 (38%), Gaps = 24/289 (8%)

Query  69   QHSNHARSKSVEEVREDLASELTSPLGCVTYPQNLSLTNYIDY----IFCPTLCYE--LE  122
            Q                   +L S       P  L    Y+ +    +  P   Y   + 
Sbjct  48   QKELLKLLLFSYRPVSLSFRKLASAAALSQDPSLLEYLGYVFFYPGLLVGPIFSYSDYMS  107

Query  123  YPRNKNRQWTELAAKALAVFGCIFLLTLTSEEFIVPVLSEASAQLPLVHGAPDKALILAE  182
            +PR+   +W     + LA       L LT    I  +LS    +          A +L  
Sbjct  108  FPRDPLFRWLYYVKRNLAPALGALFLGLTYLILIQYLLSHLPDKDFSKFKFLSYAFLLRF  167

Query  183  TISMLLFPFMITFLLVFLVIFEYVLGAFAE------------ITRFADRQFYSDWWNSSD  230
            ++ M     ++  L +FL+IF+++   FAE              R A    Y  W N+  
Sbjct  168  SVIMR---ILLGLLWLFLLIFDFLGWLFAEGEDILFGLGFNGWDRVAPENIYRCWENAVS  224

Query  231  WLEFSREWNIPVHHFLRRHVYFPSLSYFSQP--VAMFITFLVSSVFHEL-VMSCITKKLR  287
            + EF R WNIPVH +L+R+VY P          +A   TFL S+V+H   +   +   LR
Sbjct  225  FSEFWRAWNIPVHKWLKRYVYKPLGKKGKLNKFLATLATFLFSAVWHGYYLGYLLWFVLR  284

Query  288  GYGFLAMMLQMPIVAVQRSRFLRGKRTLNNVFFWLSMITGLSMMCALYV  336
                LA  L   +V +   +  R +  L+NV FWL    G S+   L +
Sbjct  285  VLLLLAEKLIRRLVRLSFLKTDRRRPNLSNVIFWLGAFLGPSLALLLSL  333



Lambda      K        H        a         alpha
   0.328    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0729    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00001083

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425695 pfam00462, Glutaredoxin, Glutaredoxin                      80.2    3e-22


>CDD:425695 pfam00462, Glutaredoxin, Glutaredoxin.  
Length=60

 Score = 80.2 bits (199),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 25/63 (40%), Positives = 39/63 (62%), Gaps = 3/63 (5%)

Query  17  VVVFSKSYCPYCNASKKTLKDLGAKFYALELDEIDDGREIQNALYEMTQQRTVPNIFIGQ  76
           VV+++K  CP+C  +K+ LK LG  F  +++DE     EI+  L E++   TVP +FI  
Sbjct  1   VVLYTKPTCPFCKRAKRLLKSLGVDFEEIDVDEDP---EIREELKELSGWPTVPQVFIDG  57

Query  77  KHI  79
           +HI
Sbjct  58  EHI  60



Lambda      K        H        a         alpha
   0.314    0.129    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00001082

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461429 pfam04791, LMBR1, LMBR1-like membrane protein. Members...  314     1e-102


>CDD:461429 pfam04791, LMBR1, LMBR1-like membrane protein.  Members of this 
family are integral membrane proteins that are around 500 
residues in length. LMBR1 is not involved in preaxial polydactyly, 
as originally thought. Vertebrate members of this family 
may play a role in limb development. A member of this family 
has been shown to be a lipocalin membrane receptor.
Length=471

 Score = 314 bits (807),  Expect = 1e-102, Method: Composition-based stats.
 Identities = 114/358 (32%), Positives = 173/358 (48%), Gaps = 57/358 (16%)

Query  1    MALAYVWGLVLAIYAMGHGLVSIPRTLFRNANVSGRLRRVQAHAPRLHDRLMDAINDLES  60
            ++LA  WGL L I  +G+GLV +PR+L+R +N+  RL+R+   A +L+    +A  +LE 
Sbjct  166  ISLANTWGLFLLIILLGYGLVELPRSLWRASNLGERLKRLYFKAAKLNTEKEEAERELED  225

Query  61   LESQVTQLQQRKTGTARDFQDWIEELAETSSPIESRSAILEPSNAQGTVPPVI---TERY  117
            L  QV+ L Q  + +  D +D+IE +                      VP  I   +E+ 
Sbjct  226  LLKQVSLLSQSISSS--DLRDYIETILN-------------------KVPEEITEPSEKS  264

Query  118  MADLTRRLQRARHQKARFVDEWDRLVLLAADLQAIIDSSASRKLDFGQSPRRSTSLPHIK  177
            +A L ++L RA  ++ R  D+W +L+  A  L                            
Sbjct  265  LASLHKQLIRALQRRLRTEDQWRKLLKKAFRL---------------------------S  297

Query  178  FLTPYMRYHLYVNIIPSLRLVLGALCAIASACIIWSELVKSL-APRLSVVTLSIVSYHKD  236
             LTP + Y+ Y  ++P + L+L  + A+ S  ++WSEL   L  P LS+  L I  +   
Sbjct  298  KLTPTLEYYWYCLLLPYVLLILSVILALLSVIVVWSELTFFLIKPVLSLFALFIGLHASS  357

Query  237  PKPVDFGRQLAASAWLLYMCAAALGGVNDAKVWGNRALV-RRNTYGESACWYASLVARLT  295
                 FG +L    ++LY+C  A  G+   KV+G   LV    T   S  + A L+ RLT
Sbjct  358  SFGY-FGIELIEIIFILYLCLCAYSGLFKIKVFGFYRLVPHHQTDMNSLIFNAGLLLRLT  416

Query  296  VPIAYNFLTFLPLSVRQNTIFYHFLGRLIDLTPLGKGFDYFFPVFILLPVFATLFNLY  353
             P+ YNFL  +      + IF   LG +  L  LG GF+ +FP+FIL+   ATLFNLY
Sbjct  417  SPLCYNFLGLIHFD---SHIFTQLLGHMDVLPFLGFGFNIYFPIFILILCLATLFNLY  471



Lambda      K        H        a         alpha
   0.322    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00001084

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461429 pfam04791, LMBR1, LMBR1-like membrane protein. Members...  314     1e-102


>CDD:461429 pfam04791, LMBR1, LMBR1-like membrane protein.  Members of this 
family are integral membrane proteins that are around 500 
residues in length. LMBR1 is not involved in preaxial polydactyly, 
as originally thought. Vertebrate members of this family 
may play a role in limb development. A member of this family 
has been shown to be a lipocalin membrane receptor.
Length=471

 Score = 314 bits (807),  Expect = 1e-102, Method: Composition-based stats.
 Identities = 114/358 (32%), Positives = 173/358 (48%), Gaps = 57/358 (16%)

Query  1    MALAYVWGLVLAIYAMGHGLVSIPRTLFRNANVSGRLRRVQAHAPRLHDRLMDAINDLES  60
            ++LA  WGL L I  +G+GLV +PR+L+R +N+  RL+R+   A +L+    +A  +LE 
Sbjct  166  ISLANTWGLFLLIILLGYGLVELPRSLWRASNLGERLKRLYFKAAKLNTEKEEAERELED  225

Query  61   LESQVTQLQQRKTGTARDFQDWIEELAETSSPIESRSAILEPSNAQGTVPPVI---TERY  117
            L  QV+ L Q  + +  D +D+IE +                      VP  I   +E+ 
Sbjct  226  LLKQVSLLSQSISSS--DLRDYIETILN-------------------KVPEEITEPSEKS  264

Query  118  MADLTRRLQRARHQKARFVDEWDRLVLLAADLQAIIDSSASRKLDFGQSPRRSTSLPHIK  177
            +A L ++L RA  ++ R  D+W +L+  A  L                            
Sbjct  265  LASLHKQLIRALQRRLRTEDQWRKLLKKAFRL---------------------------S  297

Query  178  FLTPYMRYHLYVNIIPSLRLVLGALCAIASACIIWSELVKSL-APRLSVVTLSIVSYHKD  236
             LTP + Y+ Y  ++P + L+L  + A+ S  ++WSEL   L  P LS+  L I  +   
Sbjct  298  KLTPTLEYYWYCLLLPYVLLILSVILALLSVIVVWSELTFFLIKPVLSLFALFIGLHASS  357

Query  237  PKPVDFGRQLAASAWLLYMCAAALGGVNDAKVWGNRALV-RRNTYGESACWYASLVARLT  295
                 FG +L    ++LY+C  A  G+   KV+G   LV    T   S  + A L+ RLT
Sbjct  358  SFGY-FGIELIEIIFILYLCLCAYSGLFKIKVFGFYRLVPHHQTDMNSLIFNAGLLLRLT  416

Query  296  VPIAYNFLTFLPLSVRQNTIFYHFLGRLIDLTPLGKGFDYFFPVFILLPVFATLFNLY  353
             P+ YNFL  +      + IF   LG +  L  LG GF+ +FP+FIL+   ATLFNLY
Sbjct  417  SPLCYNFLGLIHFD---SHIFTQLLGHMDVLPFLGFGFNIYFPIFILILCLATLFNLY  471



Lambda      K        H        a         alpha
   0.322    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00006964

Length=681
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461429 pfam04791, LMBR1, LMBR1-like membrane protein. Members...  453     1e-154


>CDD:461429 pfam04791, LMBR1, LMBR1-like membrane protein.  Members of this 
family are integral membrane proteins that are around 500 
residues in length. LMBR1 is not involved in preaxial polydactyly, 
as originally thought. Vertebrate members of this family 
may play a role in limb development. A member of this family 
has been shown to be a lipocalin membrane receptor.
Length=471

 Score = 453 bits (1168),  Expect = 1e-154, Method: Composition-based stats.
 Identities = 177/523 (34%), Positives = 260/523 (50%), Gaps = 70/523 (13%)

Query  13   SSIFFALALLAISVSVLLLLRRFLTLRATPAYLSVPVFLALALPASVVLLVPIDLASSSR  72
            S I F L  L + +  L LLRR+   +  PAY+ + VFLALAL   +VLL+P+D+AS++ 
Sbjct  1    SLIIFLLLFLLLFLLSLYLLRRYGRPKDVPAYVKLLVFLALALSFLIVLLLPLDIASTAY  60

Query  73   DGGGPKAI-----------WLPDRLILVAWRITYWLIFVLTWAILPLLGEYIDSGYRDTK  121
                               WLP  L+LV WRI YWL F+LTW ILP +  Y +SG    K
Sbjct  61   RQSSNSNEVLLYPCSYYWSWLPSSLLLVLWRIVYWLSFLLTWLILPFMQFYSESGDFTGK  120

Query  122  SRILYSLRSNARYQLIVLCCAFVGLIYISIQNGFRFA--SIKALVMALAYVWGLVLAIYA  179
             ++  SL+ NA Y  ++L      LIY+ I  G      S+K  +++LA  WGL L I  
Sbjct  121  GKLKRSLKENAIYYGLLLVIVLGLLIYLLILPGESLLLRSLKPFLISLANTWGLFLLIIL  180

Query  180  MGHGLVSIPRTLFRNANVSGRLRRVQAHAPRLHDRLMDAINDLESLESQVTQLQQRKTGT  239
            +G+GLV +PR+L+R +N+  RL+R+   A +L+    +A  +LE L  QV+ L Q  + +
Sbjct  181  LGYGLVELPRSLWRASNLGERLKRLYFKAAKLNTEKEEAERELEDLLKQVSLLSQSISSS  240

Query  240  ARDFQDWIEELAETSSPIESRSAILEPSNAQGTVPPVI---TERYMADLTRRLQRARHQK  296
              D +D+IE +                      VP  I   +E+ +A L ++L RA  ++
Sbjct  241  --DLRDYIETILN-------------------KVPEEITEPSEKSLASLHKQLIRALQRR  279

Query  297  ARFVDEWDRLVLLAADLQAIIDSSASRKLDFGQSPRRSTSLPHIKFLTPYMRYHLYVNII  356
             R  D+W +L+  A  L                             LTP + Y+ Y  ++
Sbjct  280  LRTEDQWRKLLKKAFRL---------------------------SKLTPTLEYYWYCLLL  312

Query  357  PSLRLVLGALCAIASACIIWSELVKSL-APRLSVVTLSIVSYHKDPKPVDFGRQLAASAW  415
            P + L+L  + A+ S  ++WSEL   L  P LS+  L I  +        FG +L    +
Sbjct  313  PYVLLILSVILALLSVIVVWSELTFFLIKPVLSLFALFIGLHASSSFGY-FGIELIEIIF  371

Query  416  LLYMCAAALGGVNDAKVWGNRALV-RRNTYGESACWYASLVARLTVPIAYNFLTFLPLSV  474
            +LY+C  A  G+   KV+G   LV    T   S  + A L+ RLT P+ YNFL  +    
Sbjct  372  ILYLCLCAYSGLFKIKVFGFYRLVPHHQTDMNSLIFNAGLLLRLTSPLCYNFLGLIHFD-  430

Query  475  RQNTIFYHFLGRLIDLTPLGKGFDYFFPVFILLPVFATLFNLY  517
              + IF   LG +  L  LG GF+ +FP+FIL+   ATLFNLY
Sbjct  431  --SHIFTQLLGHMDVLPFLGFGFNIYFPIFILILCLATLFNLY  471



Lambda      K        H        a         alpha
   0.324    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 867176520


Query= TCONS_00006965

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460475 pfam02179, BAG, BAG domain. Domain present in Hsp70 re...  85.7    2e-21


>CDD:460475 pfam02179, BAG, BAG domain.  Domain present in Hsp70 regulators.
Length=77

 Score = 85.7 bits (213),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 34/71 (48%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query  320  ELLPLCEAYVAHPPTDPKARDFEHKKLSETILAQVILKADGIEPDGDEIARNARKALVKE  379
            +L P  EA+   PP+  K RD E+K+LSE ++   +LK DGI+ +GD  AR ARKA VKE
Sbjct  10   KLEPQVEAFEGSPPS--KKRDKEYKRLSEMLMKL-LLKLDGIDTEGDPEAREARKAAVKE  66

Query  380  AQAALNRLDQA  390
             Q  L +LD  
Sbjct  67   VQGLLEKLDAL  77



Lambda      K        H        a         alpha
   0.312    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 472215968


Query= TCONS_00001085

Length=63
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425695 pfam00462, Glutaredoxin, Glutaredoxin                      49.4    9e-11


>CDD:425695 pfam00462, Glutaredoxin, Glutaredoxin.  
Length=60

 Score = 49.4 bits (119),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 23/33 (70%), Gaps = 0/33 (0%)

Query  17  VVVFSKSYCPYCNASKKTLKDLGAKFYALELDE  49
           VV+++K  CP+C  +K+ LK LG  F  +++DE
Sbjct  1   VVLYTKPTCPFCKRAKRLLKSLGVDFEEIDVDE  33



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00001086

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460475 pfam02179, BAG, BAG domain. Domain present in Hsp70 re...  85.7    2e-21


>CDD:460475 pfam02179, BAG, BAG domain.  Domain present in Hsp70 regulators.
Length=77

 Score = 85.7 bits (213),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 34/71 (48%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query  320  ELLPLCEAYVAHPPTDPKARDFEHKKLSETILAQVILKADGIEPDGDEIARNARKALVKE  379
            +L P  EA+   PP+  K RD E+K+LSE ++   +LK DGI+ +GD  AR ARKA VKE
Sbjct  10   KLEPQVEAFEGSPPS--KKRDKEYKRLSEMLMKL-LLKLDGIDTEGDPEAREARKAAVKE  66

Query  380  AQAALNRLDQA  390
             Q  L +LD  
Sbjct  67   VQGLLEKLDAL  77



Lambda      K        H        a         alpha
   0.312    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 472215968


Query= TCONS_00006966

Length=559


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 697897876


Query= TCONS_00001087

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435089 pfam16035, Chalcone_2, Chalcone isomerase like             289     8e-98


>CDD:435089 pfam16035, Chalcone_2, Chalcone isomerase like.  
Length=203

 Score = 289 bits (742),  Expect = 8e-98, Method: Composition-based stats.
 Identities = 106/230 (46%), Positives = 138/230 (60%), Gaps = 27/230 (12%)

Query  181  DEYQLLGLGIRTVSFLQIQVYVVGLYVAKADISELQQRLLRTAVNPPGRDSVISDTPGAT  240
             EY LLGLG+RTVSFL I+VYVVG+Y+A +DI++LQ+ L  T ++               
Sbjct  1    TEYTLLGLGVRTVSFLSIKVYVVGIYIATSDIAKLQKVLNSTYLSKN------------F  48

Query  241  SATSLVSTERQGLKELLLDPEMGEAAWTQILKQDGLRTAFRIVPTRNTDFLHLRDGWVRG  300
              T LV +E++ LK+ LLDPE  E     +L   G+RTA RIVP RNTDF HLRDG+VR 
Sbjct  49   IDTDLVKSEKENLKKALLDPEKSEELIENLLDS-GIRTAARIVPVRNTDFGHLRDGFVRA  107

Query  301  VTARAQKANAKAKEGGAGAPSEFEDESFGAAMNEFKSLFGGGQRKSVPKGQTLLLVRNAR  360
            + AR +               E++DE FG  + EFKSLF    + SVPKG  LLL R+A 
Sbjct  108  ILARPKAKY------------EYDDEEFGEGLKEFKSLFPR--KGSVPKGDELLLERDAN  153

Query  361  GELNALFHPDPAKPMRFLGRVADERISRLVWLNYLAGKTVSSEGARQSVV  410
            G L+  +     K +  LG V D R+SRL++L YL+GK   SE AR+SVV
Sbjct  154  GSLSVSYDGKKKKEVEKLGTVEDPRVSRLLFLQYLSGKKPLSEPARKSVV  203



Lambda      K        H        a         alpha
   0.316    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 519925656


Query= TCONS_00001088

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family ...  82.8    2e-18


>CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28.  Glycosyl 
hydrolase family 28 includes polygalacturonase EC:3.2.1.15 
as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. 
These enzymes are important in cell wall metabolism.
Length=319

 Score = 82.8 bits (205),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 42/118 (36%), Positives = 57/118 (48%), Gaps = 7/118 (6%)

Query  166  FVKDPPLWSLNIINGTNMRFNSIYCN-----ATSVDAPYGHNWVRNTDGFDTMDAVNIQP  220
             VK+  +  LNI N     F+            ++D   G +   NTDGFD   +  +  
Sbjct  90   KVKNSKITGLNIKNSPVFHFSVQSGTDLTISDITIDNSAGDSNGHNTDGFDVGSSSGVTI  149

Query  221  TNFVYQGGDDCIAIKPRSYNIDIEDVTCVGGNGIAIGSLDQYLEDSNVENVRVDKLNV  278
            +N      DDCIAI   S NI I +VTC GG+GI+IGS+     D+ V+NV V    V
Sbjct  150  SNTNIYNQDDCIAINSGS-NISITNVTCGGGHGISIGSVGGR-SDNTVKNVTVKDSTV  205



Lambda      K        H        a         alpha
   0.319    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00006968

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family ...  80.9    4e-18


>CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28.  Glycosyl 
hydrolase family 28 includes polygalacturonase EC:3.2.1.15 
as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. 
These enzymes are important in cell wall metabolism.
Length=319

 Score = 80.9 bits (200),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 42/118 (36%), Positives = 57/118 (48%), Gaps = 7/118 (6%)

Query  166  FVKDPPLWSLNIINGTNMRFNSIYCN-----ATSVDAPYGHNWVRNTDGFDTMDAVNIQP  220
             VK+  +  LNI N     F+            ++D   G +   NTDGFD   +  +  
Sbjct  90   KVKNSKITGLNIKNSPVFHFSVQSGTDLTISDITIDNSAGDSNGHNTDGFDVGSSSGVTI  149

Query  221  TNFVYQGGDDCIAIKPRSYNIDIEDVTCVGGNGIAIGSLDQYLEDSNVENVRVDKLNV  278
            +N      DDCIAI   S NI I +VTC GG+GI+IGS+     D+ V+NV V    V
Sbjct  150  SNTNIYNQDDCIAINSGS-NISITNVTCGGGHGISIGSVGGR-SDNTVKNVTVKDSTV  205



Lambda      K        H        a         alpha
   0.319    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00001089

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family ...  82.0    7e-18


>CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28.  Glycosyl 
hydrolase family 28 includes polygalacturonase EC:3.2.1.15 
as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. 
These enzymes are important in cell wall metabolism.
Length=319

 Score = 82.0 bits (203),  Expect = 7e-18, Method: Composition-based stats.
 Identities = 42/118 (36%), Positives = 57/118 (48%), Gaps = 7/118 (6%)

Query  166  FVKDPPLWSLNIINGTNMRFNSIYCN-----ATSVDAPYGHNWVRNTDGFDTMDAVNIQP  220
             VK+  +  LNI N     F+            ++D   G +   NTDGFD   +  +  
Sbjct  90   KVKNSKITGLNIKNSPVFHFSVQSGTDLTISDITIDNSAGDSNGHNTDGFDVGSSSGVTI  149

Query  221  TNFVYQGGDDCIAIKPRSYNIDIEDVTCVGGNGIAIGSLDQYLEDSNVENVRVDKLNV  278
            +N      DDCIAI   S NI I +VTC GG+GI+IGS+     D+ V+NV V    V
Sbjct  150  SNTNIYNQDDCIAINSGS-NISITNVTCGGGHGISIGSVGGR-SDNTVKNVTVKDSTV  205



Lambda      K        H        a         alpha
   0.319    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 507942834


Query= TCONS_00006969

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  182     1e-55


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 182 bits (464),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 92/329 (28%), Positives = 139/329 (42%), Gaps = 42/329 (13%)

Query  13   TPLIESAALSKVAGCRIFLKLELLQPSGSFKSRGIGNLIRSALLDPQNKDEQLHFYSSSG  72
            TPL+    LSK  G  ++LKLE L P+GSFK RG  NL+       +  +       +S 
Sbjct  8    TPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNLLLRL----KEGEGGKTVVEASS  63

Query  73   GNAGLAAVIAARDLGYPCTVVVPFSTKPMMINKLWAAGAADVIQHGASWSDADTYLRKNY  132
            GN G A   AA  LG   T+VVP    P  +  + A G A+V+  G  + +A    R+  
Sbjct  64   GNHGRALAAAAARLGLKVTIVVPEDAPPGKLLLMRALG-AEVVLVGGDYDEAVAAARE--  120

Query  133  IYNQDTQHSSRRNIYLCPYDHPEIWKGAATMVSEMVDQLPPRDPSSTCNFPADAIVCSVG  192
            +  +          Y+  YD+P   +G  T+  E+++QL             DA+V  VG
Sbjct  121  LAAEG-----PGAYYINQYDNPLNIEGYGTIGLEILEQLGG---------DPDAVVVPVG  166

Query  193  GGGLFNGIVEGVDSYLQSQAMNGKGNARRNVKILAAETHGADSLALSLQHGSLQSLPGIT  252
            GGGL  GI  G+      + +        +V+++  E  GA +LA SL  G    +P   
Sbjct  167  GGGLIAGIARGL------KELGP------DVRVIGVEPEGAPALARSLAAGRPVPVPVAD  214

Query  253  SLATSLGAVCV-AEKTFQYASSPPAGIDVASVVGSDAEAARGVLRLADDLRLQVELACGI  311
            ++A  LG                   +     V SD EA   +  LA    + VE +   
Sbjct  215  TIADGLGVGDEPGALALDLLD---EYVGEVVTV-SDEEALEAMRLLARREGIVVEPSSAA  270

Query  312  SVEVAVGGRLRNLIPDLTPNSRVVIVVCG  340
            ++  A+   L   +       RVV+V+ G
Sbjct  271  AL-AALKLALAGELK---GGDRVVVVLTG  295



Lambda      K        H        a         alpha
   0.317    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00001090

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  100     1e-25


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 100 bits (251),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 55/230 (24%), Positives = 90/230 (39%), Gaps = 37/230 (16%)

Query  12   ADVIQHGASWSDADTYLRKNYIYNQDTQHSSRRNIYLCPYDHPEIWKGAATMVSEMVDQL  71
            A+V+  G  + +A    R+  +  +          Y+  YD+P   +G  T+  E+++QL
Sbjct  102  AEVVLVGGDYDEAVAAARE--LAAEG-----PGAYYINQYDNPLNIEGYGTIGLEILEQL  154

Query  72   PPRDPSSTCNFPADAIVCSVGGGGLFNGIVEGVDSYLQSQAMNGKGNARRNVKILAAETH  131
                         DA+V  VGGGGL  GI  G+      + +        +V+++  E  
Sbjct  155  GG---------DPDAVVVPVGGGGLIAGIARGL------KELGP------DVRVIGVEPE  193

Query  132  GADSLALSLQHGSLQSLPGITSLATSLGAVCV-AEKTFQYASSPPAGIDVASVVGSDAEA  190
            GA +LA SL  G    +P   ++A  LG                   +     V SD EA
Sbjct  194  GAPALARSLAAGRPVPVPVADTIADGLGVGDEPGALALDLLD---EYVGEVVTV-SDEEA  249

Query  191  ARGVLRLADDLRLQVELACGISVEVAVGGRLRNLIPDLTPNSRVVIVVCG  240
               +  LA    + VE +   ++          L  +L    RVV+V+ G
Sbjct  250  LEAMRLLARREGIVVEPSSAAALAAL----KLALAGELKGGDRVVVVLTG  295



Lambda      K        H        a         alpha
   0.317    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00001091

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  168     2e-49


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 168 bits (428),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 85/314 (27%), Positives = 131/314 (42%), Gaps = 42/314 (13%)

Query  112  RIFLKLELLQPSGSFKSRGIGNLIRSALLDPQNKDEQLHFYSSSGGNAGLAAVIAARDLG  171
             ++LKLE L P+GSFK RG  NL+       +  +       +S GN G A   AA  LG
Sbjct  23   DVYLKLESLNPTGSFKDRGALNLLLRL----KEGEGGKTVVEASSGNHGRALAAAAARLG  78

Query  172  YPCTVVVPFSTKPMMINKLWAAGAADVIQHGASWSDADTYLRKNYIYNQDTQHSSRRNIY  231
               T+VVP    P  +  + A G A+V+  G  + +A    R+  +  +          Y
Sbjct  79   LKVTIVVPEDAPPGKLLLMRALG-AEVVLVGGDYDEAVAAARE--LAAEG-----PGAYY  130

Query  232  LCPYDHPEIWKGAATMVSEMVDQLPPRDPSSTCNFPADAIVCSVGGGGLFNGIVEGVDSY  291
            +  YD+P   +G  T+  E+++QL             DA+V  VGGGGL  GI  G+   
Sbjct  131  INQYDNPLNIEGYGTIGLEILEQLGG---------DPDAVVVPVGGGGLIAGIARGL---  178

Query  292  LQSQAMNGKGNARRNVKILAAETHGADSLALSLQHGSLQSLPGITSLATSLGAVCV-AEK  350
               + +        +V+++  E  GA +LA SL  G    +P   ++A  LG        
Sbjct  179  ---KELGP------DVRVIGVEPEGAPALARSLAAGRPVPVPVADTIADGLGVGDEPGAL  229

Query  351  TFQYASSPPAGIDVASVVGSDAEAARGVLRLADDLRLQVELACGISVEVAVGGRLRNLIP  410
                       +     V SD EA   +  LA    + VE +   ++  A+   L   + 
Sbjct  230  ALDLLD---EYVGEVVTV-SDEEALEAMRLLARREGIVVEPSSAAAL-AALKLALAGELK  284

Query  411  DLTPNSRVVIVVCG  424
                  RVV+V+ G
Sbjct  285  ---GGDRVVVVLTG  295



Lambda      K        H        a         alpha
   0.319    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00001092

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  100     1e-25


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 100 bits (251),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 55/230 (24%), Positives = 90/230 (39%), Gaps = 37/230 (16%)

Query  12   ADVIQHGASWSDADTYLRKNYIYNQDTQHSSRRNIYLCPYDHPEIWKGAATMVSEMVDQL  71
            A+V+  G  + +A    R+  +  +          Y+  YD+P   +G  T+  E+++QL
Sbjct  102  AEVVLVGGDYDEAVAAARE--LAAEG-----PGAYYINQYDNPLNIEGYGTIGLEILEQL  154

Query  72   PPRDPSSTCNFPADAIVCSVGGGGLFNGIVEGVDSYLQSQAMNGKGNARRNVKILAAETH  131
                         DA+V  VGGGGL  GI  G+      + +        +V+++  E  
Sbjct  155  GG---------DPDAVVVPVGGGGLIAGIARGL------KELGP------DVRVIGVEPE  193

Query  132  GADSLALSLQHGSLQSLPGITSLATSLGAVCV-AEKTFQYASSPPAGIDVASVVGSDAEA  190
            GA +LA SL  G    +P   ++A  LG                   +     V SD EA
Sbjct  194  GAPALARSLAAGRPVPVPVADTIADGLGVGDEPGALALDLLD---EYVGEVVTV-SDEEA  249

Query  191  ARGVLRLADDLRLQVELACGISVEVAVGGRLRNLIPDLTPNSRVVIVVCG  240
               +  LA    + VE +   ++          L  +L    RVV+V+ G
Sbjct  250  LEAMRLLARREGIVVEPSSAAALAAL----KLALAGELKGGDRVVVVLTG  295



Lambda      K        H        a         alpha
   0.317    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00001094

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  182     1e-55


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 182 bits (464),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 92/329 (28%), Positives = 139/329 (42%), Gaps = 42/329 (13%)

Query  13   TPLIESAALSKVAGCRIFLKLELLQPSGSFKSRGIGNLIRSALLDPQNKDEQLHFYSSSG  72
            TPL+    LSK  G  ++LKLE L P+GSFK RG  NL+       +  +       +S 
Sbjct  8    TPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNLLLRL----KEGEGGKTVVEASS  63

Query  73   GNAGLAAVIAARDLGYPCTVVVPFSTKPMMINKLWAAGAADVIQHGASWSDADTYLRKNY  132
            GN G A   AA  LG   T+VVP    P  +  + A G A+V+  G  + +A    R+  
Sbjct  64   GNHGRALAAAAARLGLKVTIVVPEDAPPGKLLLMRALG-AEVVLVGGDYDEAVAAARE--  120

Query  133  IYNQDTQHSSRRNIYLCPYDHPEIWKGAATMVSEMVDQLPPRDPSSTCNFPADAIVCSVG  192
            +  +          Y+  YD+P   +G  T+  E+++QL             DA+V  VG
Sbjct  121  LAAEG-----PGAYYINQYDNPLNIEGYGTIGLEILEQLGG---------DPDAVVVPVG  166

Query  193  GGGLFNGIVEGVDSYLQSQAMNGKGNARRNVKILAAETHGADSLALSLQHGSLQSLPGIT  252
            GGGL  GI  G+      + +        +V+++  E  GA +LA SL  G    +P   
Sbjct  167  GGGLIAGIARGL------KELGP------DVRVIGVEPEGAPALARSLAAGRPVPVPVAD  214

Query  253  SLATSLGAVCV-AEKTFQYASSPPAGIDVASVVGSDAEAARGVLRLADDLRLQVELACGI  311
            ++A  LG                   +     V SD EA   +  LA    + VE +   
Sbjct  215  TIADGLGVGDEPGALALDLLD---EYVGEVVTV-SDEEALEAMRLLARREGIVVEPSSAA  270

Query  312  SVEVAVGGRLRNLIPDLTPNSRVVIVVCG  340
            ++  A+   L   +       RVV+V+ G
Sbjct  271  AL-AALKLALAGELK---GGDRVVVVLTG  295



Lambda      K        H        a         alpha
   0.317    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00001093

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  100     1e-25


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 100 bits (251),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 55/230 (24%), Positives = 90/230 (39%), Gaps = 37/230 (16%)

Query  12   ADVIQHGASWSDADTYLRKNYIYNQDTQHSSRRNIYLCPYDHPEIWKGAATMVSEMVDQL  71
            A+V+  G  + +A    R+  +  +          Y+  YD+P   +G  T+  E+++QL
Sbjct  102  AEVVLVGGDYDEAVAAARE--LAAEG-----PGAYYINQYDNPLNIEGYGTIGLEILEQL  154

Query  72   PPRDPSSTCNFPADAIVCSVGGGGLFNGIVEGVDSYLQSQAMNGKGNARRNVKILAAETH  131
                         DA+V  VGGGGL  GI  G+      + +        +V+++  E  
Sbjct  155  GG---------DPDAVVVPVGGGGLIAGIARGL------KELGP------DVRVIGVEPE  193

Query  132  GADSLALSLQHGSLQSLPGITSLATSLGAVCV-AEKTFQYASSPPAGIDVASVVGSDAEA  190
            GA +LA SL  G    +P   ++A  LG                   +     V SD EA
Sbjct  194  GAPALARSLAAGRPVPVPVADTIADGLGVGDEPGALALDLLD---EYVGEVVTV-SDEEA  249

Query  191  ARGVLRLADDLRLQVELACGISVEVAVGGRLRNLIPDLTPNSRVVIVVCG  240
               +  LA    + VE +   ++          L  +L    RVV+V+ G
Sbjct  250  LEAMRLLARREGIVVEPSSAAALAAL----KLALAGELKGGDRVVVVLTG  295



Lambda      K        H        a         alpha
   0.317    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00001095

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  100     1e-25


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 100 bits (251),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 55/230 (24%), Positives = 90/230 (39%), Gaps = 37/230 (16%)

Query  12   ADVIQHGASWSDADTYLRKNYIYNQDTQHSSRRNIYLCPYDHPEIWKGAATMVSEMVDQL  71
            A+V+  G  + +A    R+  +  +          Y+  YD+P   +G  T+  E+++QL
Sbjct  102  AEVVLVGGDYDEAVAAARE--LAAEG-----PGAYYINQYDNPLNIEGYGTIGLEILEQL  154

Query  72   PPRDPSSTCNFPADAIVCSVGGGGLFNGIVEGVDSYLQSQAMNGKGNARRNVKILAAETH  131
                         DA+V  VGGGGL  GI  G+      + +        +V+++  E  
Sbjct  155  GG---------DPDAVVVPVGGGGLIAGIARGL------KELGP------DVRVIGVEPE  193

Query  132  GADSLALSLQHGSLQSLPGITSLATSLGAVCV-AEKTFQYASSPPAGIDVASVVGSDAEA  190
            GA +LA SL  G    +P   ++A  LG                   +     V SD EA
Sbjct  194  GAPALARSLAAGRPVPVPVADTIADGLGVGDEPGALALDLLD---EYVGEVVTV-SDEEA  249

Query  191  ARGVLRLADDLRLQVELACGISVEVAVGGRLRNLIPDLTPNSRVVIVVCG  240
               +  LA    + VE +   ++          L  +L    RVV+V+ G
Sbjct  250  LEAMRLLARREGIVVEPSSAAALAAL----KLALAGELKGGDRVVVVLTG  295



Lambda      K        H        a         alpha
   0.317    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00001096

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  182     1e-55


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 182 bits (464),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 92/329 (28%), Positives = 139/329 (42%), Gaps = 42/329 (13%)

Query  13   TPLIESAALSKVAGCRIFLKLELLQPSGSFKSRGIGNLIRSALLDPQNKDEQLHFYSSSG  72
            TPL+    LSK  G  ++LKLE L P+GSFK RG  NL+       +  +       +S 
Sbjct  8    TPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNLLLRL----KEGEGGKTVVEASS  63

Query  73   GNAGLAAVIAARDLGYPCTVVVPFSTKPMMINKLWAAGAADVIQHGASWSDADTYLRKNY  132
            GN G A   AA  LG   T+VVP    P  +  + A G A+V+  G  + +A    R+  
Sbjct  64   GNHGRALAAAAARLGLKVTIVVPEDAPPGKLLLMRALG-AEVVLVGGDYDEAVAAARE--  120

Query  133  IYNQDTQHSSRRNIYLCPYDHPEIWKGAATMVSEMVDQLPPRDPSSTCNFPADAIVCSVG  192
            +  +          Y+  YD+P   +G  T+  E+++QL             DA+V  VG
Sbjct  121  LAAEG-----PGAYYINQYDNPLNIEGYGTIGLEILEQLGG---------DPDAVVVPVG  166

Query  193  GGGLFNGIVEGVDSYLQSQAMNGKGNARRNVKILAAETHGADSLALSLQHGSLQSLPGIT  252
            GGGL  GI  G+      + +        +V+++  E  GA +LA SL  G    +P   
Sbjct  167  GGGLIAGIARGL------KELGP------DVRVIGVEPEGAPALARSLAAGRPVPVPVAD  214

Query  253  SLATSLGAVCV-AEKTFQYASSPPAGIDVASVVGSDAEAARGVLRLADDLRLQVELACGI  311
            ++A  LG                   +     V SD EA   +  LA    + VE +   
Sbjct  215  TIADGLGVGDEPGALALDLLD---EYVGEVVTV-SDEEALEAMRLLARREGIVVEPSSAA  270

Query  312  SVEVAVGGRLRNLIPDLTPNSRVVIVVCG  340
            ++  A+   L   +       RVV+V+ G
Sbjct  271  AL-AALKLALAGELK---GGDRVVVVLTG  295



Lambda      K        H        a         alpha
   0.317    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00001097

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  100     1e-25


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 100 bits (251),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 55/230 (24%), Positives = 90/230 (39%), Gaps = 37/230 (16%)

Query  12   ADVIQHGASWSDADTYLRKNYIYNQDTQHSSRRNIYLCPYDHPEIWKGAATMVSEMVDQL  71
            A+V+  G  + +A    R+  +  +          Y+  YD+P   +G  T+  E+++QL
Sbjct  102  AEVVLVGGDYDEAVAAARE--LAAEG-----PGAYYINQYDNPLNIEGYGTIGLEILEQL  154

Query  72   PPRDPSSTCNFPADAIVCSVGGGGLFNGIVEGVDSYLQSQAMNGKGNARRNVKILAAETH  131
                         DA+V  VGGGGL  GI  G+      + +        +V+++  E  
Sbjct  155  GG---------DPDAVVVPVGGGGLIAGIARGL------KELGP------DVRVIGVEPE  193

Query  132  GADSLALSLQHGSLQSLPGITSLATSLGAVCV-AEKTFQYASSPPAGIDVASVVGSDAEA  190
            GA +LA SL  G    +P   ++A  LG                   +     V SD EA
Sbjct  194  GAPALARSLAAGRPVPVPVADTIADGLGVGDEPGALALDLLD---EYVGEVVTV-SDEEA  249

Query  191  ARGVLRLADDLRLQVELACGISVEVAVGGRLRNLIPDLTPNSRVVIVVCG  240
               +  LA    + VE +   ++          L  +L    RVV+V+ G
Sbjct  250  LEAMRLLARREGIVVEPSSAAALAAL----KLALAGELKGGDRVVVVLTG  295



Lambda      K        H        a         alpha
   0.317    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00006970

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00001099

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00006971

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00001100

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00001101

Length=778


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 995323968


Query= TCONS_00006973

Length=778


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 995323968


Query= TCONS_00006974

Length=778


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 995323968


Query= TCONS_00001102

Length=778


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0777    0.140     1.90     42.6     43.6 

Effective search space used: 995323968


Query= TCONS_00001103

Length=778


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 995323968


Query= TCONS_00006975

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00006976

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461161 pfam04080, Per1, Per1-like family. PER1 is required fo...  378     1e-133


>CDD:461161 pfam04080, Per1, Per1-like family.  PER1 is required for GPI-phospholipase 
A2 activity and is involved in lipid remodelling 
of GPI-anchored proteins. PER1 is part of the CREST superfamily.
Length=254

 Score = 378 bits (973),  Expect = 1e-133, Method: Composition-based stats.
 Identities = 149/265 (56%), Positives = 194/265 (73%), Gaps = 11/265 (4%)

Query  57   PLHLRLLLWTCPAECDYTCQHVVTDRRLARDPPMLNPVVQFHGKWPFRRILGMQEPFSVL  116
            PL+LRLLLW CP++CDY C H++TD R++R  P    +VQFHGKWPF+R+ G+QEP SVL
Sbjct  1    PLYLRLLLWDCPSDCDYQCMHIITDERISRGLP----IVQFHGKWPFKRVFGIQEPASVL  56

Query  117  FSLLNLLAHWNGIGRIKETVPAWHSLRPYYLTFGYCGLACWTFSMLFHTRDFPLTEKLDY  176
            FSLLNLLAH+ G+ + +  +P  + LRP Y+ +    +  WT+S +FHTRDFPLTEKLDY
Sbjct  57   FSLLNLLAHYRGLRKFRRLIPYSYPLRPVYVNYAIVSMNAWTWSTIFHTRDFPLTEKLDY  116

Query  177  FGAGANVMYGLYLAIIRILRLDQGKPRYKPTLRRLTTTICVLLYTMHVCYLSFWSWDYTY  236
            F AGA V+YGLY AI+RI RLD+   R      RL T +C+ LYT+HV YL+F+ WDY Y
Sbjct  117  FSAGALVLYGLYAAIVRIFRLDREAFR-----LRLFTALCIALYTLHVLYLNFYRWDYGY  171

Query  237  NMIANVVVGAIQNILWTGFSIVRYQKQGKVWMAWPGMIVVWIMLAMSLELQDFPPWHGLI  296
            NM ANVVVG +QN+LW  +S+ RY++    ++  P ++V+  +LAMSLEL DFPP  GLI
Sbjct  172  NMKANVVVGLLQNLLWLLWSLKRYRR--HPYVLKPILLVLLTLLAMSLELFDFPPIFGLI  229

Query  297  DAHSLWHLGTVIPTAWWYMYLIKDI  321
            DAH+LWHL T+ PT  WY +LIKD 
Sbjct  230  DAHALWHLATIPPTYLWYDFLIKDA  254



Lambda      K        H        a         alpha
   0.329    0.142    0.497    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00001104

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  138     2e-40
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  120     4e-34


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 138 bits (350),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 79/120 (66%), Gaps = 3/120 (3%)

Query  10   LILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLD  69
            L+LAPTRELA QI +  + LG  + ++ A ++GG     Q   L K P I+V TPGRLLD
Sbjct  49   LVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVGTPGRLLD  107

Query  70   HLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESL  129
             L+  K   L+ LK LV+DEA RLLDM FGP L++IL+ LP++R+  L SAT+   +E L
Sbjct  108  LLQERK--LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 120 bits (302),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 48/109 (44%), Positives = 63/109 (58%), Gaps = 1/109 (1%)

Query  165  KDIYLVYLLNEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKF  224
            K   L+ LL +  G   +IF++T    +    LL   G     LHG LSQ  R   L  F
Sbjct  2    KLEALLELLKKERGGKVLIFSQTKKTLE-AELLLEKEGIKVARLHGDLSQEEREEILEDF  60

Query  225  RSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAG  273
            R    D+LVATDVA RGLD+P VD+V+N+DLP +  +Y+ R+GR  RAG
Sbjct  61   RKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.136    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00001106

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  138     2e-40
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  120     4e-34


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 138 bits (350),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 79/120 (66%), Gaps = 3/120 (3%)

Query  10   LILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLD  69
            L+LAPTRELA QI +  + LG  + ++ A ++GG     Q   L K P I+V TPGRLLD
Sbjct  49   LVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVGTPGRLLD  107

Query  70   HLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESL  129
             L+  K   L+ LK LV+DEA RLLDM FGP L++IL+ LP++R+  L SAT+   +E L
Sbjct  108  LLQERK--LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 120 bits (302),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 48/109 (44%), Positives = 63/109 (58%), Gaps = 1/109 (1%)

Query  165  KDIYLVYLLNEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKF  224
            K   L+ LL +  G   +IF++T    +    LL   G     LHG LSQ  R   L  F
Sbjct  2    KLEALLELLKKERGGKVLIFSQTKKTLE-AELLLEKEGIKVARLHGDLSQEEREEILEDF  60

Query  225  RSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAG  273
            R    D+LVATDVA RGLD+P VD+V+N+DLP +  +Y+ R+GR  RAG
Sbjct  61   RKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.136    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00001105

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461161 pfam04080, Per1, Per1-like family. PER1 is required fo...  367     1e-129


>CDD:461161 pfam04080, Per1, Per1-like family.  PER1 is required for GPI-phospholipase 
A2 activity and is involved in lipid remodelling 
of GPI-anchored proteins. PER1 is part of the CREST superfamily.
Length=254

 Score = 367 bits (945),  Expect = 1e-129, Method: Composition-based stats.
 Identities = 145/258 (56%), Positives = 189/258 (73%), Gaps = 11/258 (4%)

Query  57   PLHLRLLLWTCPAECDYTCQHVVTDRRLARDPPMLNPVVQFHGKWPFRRILGMQEPFSVL  116
            PL+LRLLLW CP++CDY C H++TD R++R  P    +VQFHGKWPF+R+ G+QEP SVL
Sbjct  1    PLYLRLLLWDCPSDCDYQCMHIITDERISRGLP----IVQFHGKWPFKRVFGIQEPASVL  56

Query  117  FSLLNLLAHWNGIGRIKETVPAWHSLRPYYLTFGYCGLACWTFSMLFHTRDFPLTEKLDY  176
            FSLLNLLAH+ G+ + +  +P  + LRP Y+ +    +  WT+S +FHTRDFPLTEKLDY
Sbjct  57   FSLLNLLAHYRGLRKFRRLIPYSYPLRPVYVNYAIVSMNAWTWSTIFHTRDFPLTEKLDY  116

Query  177  FGAGANVMYGLYLAIIRILRLDQGKPRYKPTLRRLTTTICVLLYTMHVCYLSFWSWDYTY  236
            F AGA V+YGLY AI+RI RLD+   R      RL T +C+ LYT+HV YL+F+ WDY Y
Sbjct  117  FSAGALVLYGLYAAIVRIFRLDREAFR-----LRLFTALCIALYTLHVLYLNFYRWDYGY  171

Query  237  NMIANVVVGAIQNILWTGFSIVRYQKQGKVWMAWPGMIVVWIMLAMSLELQDFPPWHGLI  296
            NM ANVVVG +QN+LW  +S+ RY++    ++  P ++V+  +LAMSLEL DFPP  GLI
Sbjct  172  NMKANVVVGLLQNLLWLLWSLKRYRR--HPYVLKPILLVLLTLLAMSLELFDFPPIFGLI  229

Query  297  DAHSLWHLGTVIPTAWWY  314
            DAH+LWHL T+ PT  WY
Sbjct  230  DAHALWHLATIPPTYLWY  247



Lambda      K        H        a         alpha
   0.330    0.143    0.504    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00006977

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461161 pfam04080, Per1, Per1-like family. PER1 is required fo...  322     4e-113


>CDD:461161 pfam04080, Per1, Per1-like family.  PER1 is required for GPI-phospholipase 
A2 activity and is involved in lipid remodelling 
of GPI-anchored proteins. PER1 is part of the CREST superfamily.
Length=254

 Score = 322 bits (829),  Expect = 4e-113, Method: Composition-based stats.
 Identities = 130/229 (57%), Positives = 168/229 (73%), Gaps = 7/229 (3%)

Query  4    PVVQFHGKWPFRRILGMQEPFSVLFSLLNLLAHWNGIGRIKETVPAWHSLRPYYLTFGYC  63
            P+VQFHGKWPF+R+ G+QEP SVLFSLLNLLAH+ G+ + +  +P  + LRP Y+ +   
Sbjct  33   PIVQFHGKWPFKRVFGIQEPASVLFSLLNLLAHYRGLRKFRRLIPYSYPLRPVYVNYAIV  92

Query  64   GLACWTFSMLFHTRDFPLTEKLDYFGAGANVMYGLYLAIIRILRLDQGKPRYKPTLRRLT  123
             +  WT+S +FHTRDFPLTEKLDYF AGA V+YGLY AI+RI RLD+   R      RL 
Sbjct  93   SMNAWTWSTIFHTRDFPLTEKLDYFSAGALVLYGLYAAIVRIFRLDREAFR-----LRLF  147

Query  124  TTICVLLYTMHVCYLSFWSWDYTYNMIANVVVGAIQNILWTGFSIVRYQKQGKVWMAWPG  183
            T +C+ LYT+HV YL+F+ WDY YNM ANVVVG +QN+LW  +S+ RY++    ++  P 
Sbjct  148  TALCIALYTLHVLYLNFYRWDYGYNMKANVVVGLLQNLLWLLWSLKRYRR--HPYVLKPI  205

Query  184  MIVVWIMLAMSLELQDFPPWHGLIDAHSLWHLGTVIPTAWWYMYLIKDI  232
            ++V+  +LAMSLEL DFPP  GLIDAH+LWHL T+ PT  WY +LIKD 
Sbjct  206  LLVLLTLLAMSLELFDFPPIFGLIDAHALWHLATIPPTYLWYDFLIKDA  254



Lambda      K        H        a         alpha
   0.330    0.143    0.504    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00001107

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461161 pfam04080, Per1, Per1-like family. PER1 is required fo...  366     9e-129


>CDD:461161 pfam04080, Per1, Per1-like family.  PER1 is required for GPI-phospholipase 
A2 activity and is involved in lipid remodelling 
of GPI-anchored proteins. PER1 is part of the CREST superfamily.
Length=254

 Score = 366 bits (942),  Expect = 9e-129, Method: Composition-based stats.
 Identities = 142/257 (55%), Positives = 186/257 (72%), Gaps = 11/257 (4%)

Query  65   WTCPAECDYTCQHVVTDRRLARDPPMLNPVVQFHGKWPFRRILGMQEPFSVLFSLLNLLA  124
            W CP++CDY C H++TD R++R  P    +VQFHGKWPF+R+ G+QEP SVLFSLLNLLA
Sbjct  9    WDCPSDCDYQCMHIITDERISRGLP----IVQFHGKWPFKRVFGIQEPASVLFSLLNLLA  64

Query  125  HWNGIGRIKETVPAWHSLRPYYLTFGYCGLACWTFSMLFHTRDFPLTEKLDYFGAGANVM  184
            H+ G+ + +  +P  + LRP Y+ +    +  WT+S +FHTRDFPLTEKLDYF AGA V+
Sbjct  65   HYRGLRKFRRLIPYSYPLRPVYVNYAIVSMNAWTWSTIFHTRDFPLTEKLDYFSAGALVL  124

Query  185  YGLYLAIIRILRLDQGKPRYKPTLRRLTTTICVLLYTMHVCYLSFWSWDYTYNMIANVVV  244
            YGLY AI+RI RLD+   R      RL T +C+ LYT+HV YL+F+ WDY YNM ANVVV
Sbjct  125  YGLYAAIVRIFRLDREAFR-----LRLFTALCIALYTLHVLYLNFYRWDYGYNMKANVVV  179

Query  245  GAIQNILWTGFSIVRYQKQGKVWMAWPGMIVVWIMLAMSLELQDFPPWHGLIDAHSLWHL  304
            G +QN+LW  +S+ RY++    ++  P ++V+  +LAMSLEL DFPP  GLIDAH+LWHL
Sbjct  180  GLLQNLLWLLWSLKRYRR--HPYVLKPILLVLLTLLAMSLELFDFPPIFGLIDAHALWHL  237

Query  305  GTVIPTAWWYMYLIKDI  321
             T+ PT  WY +LIKD 
Sbjct  238  ATIPPTYLWYDFLIKDA  254



Lambda      K        H        a         alpha
   0.330    0.142    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00001108

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  119     2e-34
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  100     2e-26


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 119 bits (301),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 48/109 (44%), Positives = 63/109 (58%), Gaps = 1/109 (1%)

Query  122  KDIYLVYLLNEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKF  181
            K   L+ LL +  G   +IF++T    +    LL   G     LHG LSQ  R   L  F
Sbjct  2    KLEALLELLKKERGGKVLIFSQTKKTLE-AELLLEKEGIKVARLHGDLSQEEREEILEDF  60

Query  182  RSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAG  230
            R    D+LVATDVA RGLD+P VD+V+N+DLP +  +Y+ R+GR  RAG
Sbjct  61   RKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 100 bits (252),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 41/75 (55%), Positives = 53/75 (71%), Gaps = 2/75 (3%)

Query  12   KKPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERR  71
            K P I+V TPGRLLD L+  K   L+ LK LV+DEA RLLDM FGP L++IL+ LP++R+
Sbjct  93   KGPDILVGTPGRLLDLLQERK--LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQ  150

Query  72   TFLFSATMSSKVESL  86
              L SAT+   +E L
Sbjct  151  ILLLSATLPRNLEDL  165



Lambda      K        H        a         alpha
   0.320    0.136    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00006978

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461161 pfam04080, Per1, Per1-like family. PER1 is required fo...  310     2e-108


>CDD:461161 pfam04080, Per1, Per1-like family.  PER1 is required for GPI-phospholipase 
A2 activity and is involved in lipid remodelling 
of GPI-anchored proteins. PER1 is part of the CREST superfamily.
Length=254

 Score = 310 bits (796),  Expect = 2e-108, Method: Composition-based stats.
 Identities = 126/222 (57%), Positives = 163/222 (73%), Gaps = 7/222 (3%)

Query  4    PVVQFHGKWPFRRILGMQEPFSVLFSLLNLLAHWNGIGRIKETVPAWHSLRPYYLTFGYC  63
            P+VQFHGKWPF+R+ G+QEP SVLFSLLNLLAH+ G+ + +  +P  + LRP Y+ +   
Sbjct  33   PIVQFHGKWPFKRVFGIQEPASVLFSLLNLLAHYRGLRKFRRLIPYSYPLRPVYVNYAIV  92

Query  64   GLACWTFSMLFHTRDFPLTEKLDYFGAGANVMYGLYLAIIRILRLDQGKPRYKPTLRRLT  123
             +  WT+S +FHTRDFPLTEKLDYF AGA V+YGLY AI+RI RLD+   R      RL 
Sbjct  93   SMNAWTWSTIFHTRDFPLTEKLDYFSAGALVLYGLYAAIVRIFRLDREAFR-----LRLF  147

Query  124  TTICVLLYTMHVCYLSFWSWDYTYNMIANVVVGAIQNILWTGFSIVRYQKQGKVWMAWPG  183
            T +C+ LYT+HV YL+F+ WDY YNM ANVVVG +QN+LW  +S+ RY++    ++  P 
Sbjct  148  TALCIALYTLHVLYLNFYRWDYGYNMKANVVVGLLQNLLWLLWSLKRYRR--HPYVLKPI  205

Query  184  MIVVWIMLAMSLELQDFPPWHGLIDAHSLWHLGTVIPTAWWY  225
            ++V+  +LAMSLEL DFPP  GLIDAH+LWHL T+ PT  WY
Sbjct  206  LLVLLTLLAMSLELFDFPPIFGLIDAHALWHLATIPPTYLWY  247



Lambda      K        H        a         alpha
   0.330    0.143    0.515    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00006979

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  138     2e-40
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  120     4e-34


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 138 bits (350),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 79/120 (66%), Gaps = 3/120 (3%)

Query  10   LILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLD  69
            L+LAPTRELA QI +  + LG  + ++ A ++GG     Q   L K P I+V TPGRLLD
Sbjct  49   LVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVGTPGRLLD  107

Query  70   HLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESL  129
             L+  K   L+ LK LV+DEA RLLDM FGP L++IL+ LP++R+  L SAT+   +E L
Sbjct  108  LLQERK--LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 120 bits (302),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 48/109 (44%), Positives = 63/109 (58%), Gaps = 1/109 (1%)

Query  165  KDIYLVYLLNEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKF  224
            K   L+ LL +  G   +IF++T    +    LL   G     LHG LSQ  R   L  F
Sbjct  2    KLEALLELLKKERGGKVLIFSQTKKTLE-AELLLEKEGIKVARLHGDLSQEEREEILEDF  60

Query  225  RSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAG  273
            R    D+LVATDVA RGLD+P VD+V+N+DLP +  +Y+ R+GR  RAG
Sbjct  61   RKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.136    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00001109

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00001110

Length=566


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00001111

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  138     2e-40
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  120     4e-34


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 138 bits (350),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 79/120 (66%), Gaps = 3/120 (3%)

Query  10   LILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLD  69
            L+LAPTRELA QI +  + LG  + ++ A ++GG     Q   L K P I+V TPGRLLD
Sbjct  49   LVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVGTPGRLLD  107

Query  70   HLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESL  129
             L+  K   L+ LK LV+DEA RLLDM FGP L++IL+ LP++R+  L SAT+   +E L
Sbjct  108  LLQERK--LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 120 bits (302),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 48/109 (44%), Positives = 63/109 (58%), Gaps = 1/109 (1%)

Query  165  KDIYLVYLLNEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKF  224
            K   L+ LL +  G   +IF++T    +    LL   G     LHG LSQ  R   L  F
Sbjct  2    KLEALLELLKKERGGKVLIFSQTKKTLE-AELLLEKEGIKVARLHGDLSQEEREEILEDF  60

Query  225  RSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAG  273
            R    D+LVATDVA RGLD+P VD+V+N+DLP +  +Y+ R+GR  RAG
Sbjct  61   RKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.136    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00001112

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461304 pfam04427, Brix, Brix domain                               91.5    2e-22


>CDD:461304 pfam04427, Brix, Brix domain.  
Length=180

 Score = 91.5 bits (228),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 63/154 (41%), Gaps = 40/154 (26%)

Query  7    VTHLMLFSKSATGNTNMRLALT-----PRGPTLHFKVESYSLCRDVEKALKRPRGGGQDH  61
            VTHL   S+    + ++ +  +     P GPTL F VE+YSL +D+         G    
Sbjct  37   VTHLEFLSEK--NDCSLFVFGSHSKKRPNGPTLEFGVENYSLMKDL------KGTGNCLK  88

Query  62   KTPPLLVMNN--FNSPNATEDSKVPKRLESLTTTIFQSLF--PPINPQATPLSSIRRVML  117
             + PLLV N   F+ PN             L  ++FQ LF  PPIN        I RV+L
Sbjct  89   GSRPLLVFNGSFFSDPNFK-----------LLKSLFQDLFRVPPINL-----KGIDRVIL  132

Query  118  LNRELTAGSEKEEDSYVLNLRHYAISTKKTGISK  151
             +         +     +  RHY I  K+   S 
Sbjct  133  FSAY-------DNQPDKIWFRHYQIRLKEKKKSG  159



Lambda      K        H        a         alpha
   0.308    0.128    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00001113

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461304 pfam04427, Brix, Brix domain                               121     3e-33


>CDD:461304 pfam04427, Brix, Brix domain.  
Length=180

 Score = 121 bits (306),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 63/200 (32%), Positives = 88/200 (44%), Gaps = 51/200 (26%)

Query  39   SQVGSS-VSQLVKDVRLMMEPDTAVRLKERKSNRLRDYTTMAGPLGVTHLMLFSKSATGN  97
             +  SS + QL+KD+R +M+P TA  LK R SN L D         VTHL   S+    +
Sbjct  1    GRKTSSRLRQLLKDLRSLMKPHTASFLK-RNSNPLED---------VTHLEFLSEK--ND  48

Query  98   TNMRLALT-----PRGPTLHFKVESYSLCRDVEKALKRPRGGGQDHKTPPLLVMNN--FN  150
             ++ +  +     P GPTL F VE+YSL +D++        G     + PLLV N   F+
Sbjct  49   CSLFVFGSHSKKRPNGPTLEFGVENYSLMKDLKGT------GNCLKGSRPLLVFNGSFFS  102

Query  151  SPNATEDSKVPKRLESLTTTIFQSLF--PPINPQATPLSSIRRVMLLNRELTAGSEKEED  208
             PN             L  ++FQ LF  PPIN        I RV+L +         +  
Sbjct  103  DPNFK-----------LLKSLFQDLFRVPPINL-----KGIDRVILFSAY-------DNQ  139

Query  209  SYVLNLRHYAISTKKTGISK  228
               +  RHY I  K+   S 
Sbjct  140  PDKIWFRHYQIRLKEKKKSG  159



Lambda      K        H        a         alpha
   0.308    0.126    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00001114

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III. C...  303     2e-102


>CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III.  CoA-transferases 
are found in organisms from all lines of descent. 
Most of these enzymes belong to two well-known enzyme families, 
but recent work on unusual biochemical pathways of anaerobic 
bacteria has revealed the existence of a third family of 
CoA-transferases. The members of this enzyme family differ 
in sequence and reaction mechanism from CoA-transferases of 
the other families. Currently known enzymes of the new family 
are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: 
(R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: 
(R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: 
(R)-carnitine CoA-transferase. In addition, a large number 
of proteins of unknown or differently annotated function from 
Bacteria, Archaea and Eukarya apparently belong to this enzyme 
family. Properties and reaction mechanisms of the CoA-transferases 
of family III are described and compared to those 
of the previously known CoA-transferases.
Length=367

 Score = 303 bits (778),  Expect = 2e-102, Method: Composition-based stats.
 Identities = 116/225 (52%), Positives = 150/225 (67%), Gaps = 10/225 (4%)

Query  45   LKGIRVLDMTRVLAGPYCTQILGDLGADIIKVEHPVRGDDTRAWGPPYAKYIDGSHDGPG  104
            L GIRVLD+T+V+AGP+ T +L DLGA++IKVE P  GD TR  GP             G
Sbjct  1    LAGIRVLDLTQVVAGPFATMLLADLGAEVIKVEPP-GGDPTRYVGPY---------AEKG  50

Query  105  ESAYFLAVNRNKRSIGLSFAHKSGVEILHKLAKECDVLVENYLPGTLKKYGLDYETLRSI  164
             SAYFL+VNRNKRS+ L    + G E+L +L    DV++EN+ PG L++ GL YE LR+I
Sbjct  51   GSAYFLSVNRNKRSVALDLKSEEGREVLRRLVARADVVIENFRPGVLERLGLGYEDLRAI  110

Query  165  NPRLIYASITGYGQTGPYSNRAGYDVMVEAEMGLMHITGSRDGDPVKVGVAVTDLTTGLY  224
            NPRLIY S++GYGQTGPY++R GYD++ +A  GLM +TG   G PVKVG  V D+ TGL 
Sbjct  111  NPRLIYCSVSGYGQTGPYADRPGYDLIAQAMSGLMSLTGEPGGPPVKVGTPVGDIVTGLL  170

Query  225  TSNAIMAALLARMRTGQGQHIDACLSDCQVATLANIASSALISGE  269
             + AI+AALLAR RTG+GQ ID  L +  +A +       L +G 
Sbjct  171  AAIAILAALLARERTGKGQVIDVSLLEAALALMGPQLLEYLATGR  215



Lambda      K        H        a         alpha
   0.319    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00001117

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III. C...  465     1e-164


>CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III.  CoA-transferases 
are found in organisms from all lines of descent. 
Most of these enzymes belong to two well-known enzyme families, 
but recent work on unusual biochemical pathways of anaerobic 
bacteria has revealed the existence of a third family of 
CoA-transferases. The members of this enzyme family differ 
in sequence and reaction mechanism from CoA-transferases of 
the other families. Currently known enzymes of the new family 
are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: 
(R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: 
(R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: 
(R)-carnitine CoA-transferase. In addition, a large number 
of proteins of unknown or differently annotated function from 
Bacteria, Archaea and Eukarya apparently belong to this enzyme 
family. Properties and reaction mechanisms of the CoA-transferases 
of family III are described and compared to those 
of the previously known CoA-transferases.
Length=367

 Score = 465 bits (1199),  Expect = 1e-164, Method: Composition-based stats.
 Identities = 181/378 (48%), Positives = 238/378 (63%), Gaps = 11/378 (3%)

Query  45   LKGIRVLDMTRVLAGPYCTQILGDLGADIIKVEHPVRGDDTRAWGPPYAKYIDGSHDGPG  104
            L GIRVLD+T+V+AGP+ T +L DLGA++IKVE P  GD TR  GP             G
Sbjct  1    LAGIRVLDLTQVVAGPFATMLLADLGAEVIKVEPP-GGDPTRYVGPY---------AEKG  50

Query  105  ESAYFLAVNRNKRSIGLSFAHKSGVEILHKLAKECDVLVENYLPGTLKKYGLDYETLRSI  164
             SAYFL+VNRNKRS+ L    + G E+L +L    DV++EN+ PG L++ GL YE LR+I
Sbjct  51   GSAYFLSVNRNKRSVALDLKSEEGREVLRRLVARADVVIENFRPGVLERLGLGYEDLRAI  110

Query  165  NPRLIYASITGYGQTGPYSNRAGYDVMVEAEMGLMHITGSRDGDPVKVGVAVTDLTTGLY  224
            NPRLIY S++GYGQTGPY++R GYD++ +A  GLM +TG   G PVKVG  V D+ TGL 
Sbjct  111  NPRLIYCSVSGYGQTGPYADRPGYDLIAQAMSGLMSLTGEPGGPPVKVGTPVGDIVTGLL  170

Query  225  TSNAIMAALLARMRTGQGQHIDACLSDCQVATLANIASSALISGEKDSGRWGTAHPSIVP  284
             + AI+AALLAR RTG+GQ ID  L +  +A +       L +G    GR G  HP+  P
Sbjct  171  AAIAILAALLARERTGKGQVIDVSLLEAALALMGPQLLEYLATGR-VPGRVGNRHPAAAP  229

Query  285  YRSYQTLDGDILFGGGNDRLFGVLCDRLGFPEWKTDPRFITNRDRVKHREELDDLIEKRV  344
            Y  Y+T DG +    G D+ +  LC  LG PE   DPRF TN  RV++R ELD  +   +
Sbjct  230  YGLYRTADGWVAIAAGTDKQWARLCRALGRPELADDPRFATNAARVQNRAELDAELAAWL  289

Query  345  KQKTTQEWLEILEGSGMPYAAINDIQGTLNHSHVQARGMVTEVDHPACGPVKLVNTPIKY  404
              +T  EWL +L  +G+P   +N ++  L+  H++ARGMV EVDHP  GPV +   P++ 
Sbjct  290  ATRTAAEWLALLAAAGVPAGPVNTVEEVLDDPHLRARGMVVEVDHPDYGPVPVPGLPVRL  349

Query  405  SHATPGVRRPPPTLGQHT  422
            S     VRRP P LG+HT
Sbjct  350  SGTPGRVRRPAPALGEHT  367



Lambda      K        H        a         alpha
   0.319    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00001115

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III. C...  250     1e-82


>CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III.  CoA-transferases 
are found in organisms from all lines of descent. 
Most of these enzymes belong to two well-known enzyme families, 
but recent work on unusual biochemical pathways of anaerobic 
bacteria has revealed the existence of a third family of 
CoA-transferases. The members of this enzyme family differ 
in sequence and reaction mechanism from CoA-transferases of 
the other families. Currently known enzymes of the new family 
are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: 
(R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: 
(R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: 
(R)-carnitine CoA-transferase. In addition, a large number 
of proteins of unknown or differently annotated function from 
Bacteria, Archaea and Eukarya apparently belong to this enzyme 
family. Properties and reaction mechanisms of the CoA-transferases 
of family III are described and compared to those 
of the previously known CoA-transferases.
Length=367

 Score = 250 bits (640),  Expect = 1e-82, Method: Composition-based stats.
 Identities = 101/232 (44%), Positives = 135/232 (58%), Gaps = 1/232 (0%)

Query  1    MVEAEMGLMHITGSRDGDPVKVGVAVTDLTTGLYTSNAIMAALLARMRTGQGQHIDACLS  60
            + +A  GLM +TG   G PVKVG  V D+ TGL  + AI+AALLAR RTG+GQ ID  L 
Sbjct  137  IAQAMSGLMSLTGEPGGPPVKVGTPVGDIVTGLLAAIAILAALLARERTGKGQVIDVSLL  196

Query  61   DCQVATLANIASSALISGEKDSGRWGTAHPSIVPYRSYQTLDGDILFGGGNDRLFGVLCD  120
            +  +A +       L +G    GR G  HP+  PY  Y+T DG +    G D+ +  LC 
Sbjct  197  EAALALMGPQLLEYLATGR-VPGRVGNRHPAAAPYGLYRTADGWVAIAAGTDKQWARLCR  255

Query  121  RLGFPEWKTDPRFITNRDRVKHREELDDLIEKRVKQKTTQEWLEILEGSGMPYAAINDIQ  180
             LG PE   DPRF TN  RV++R ELD  +   +  +T  EWL +L  +G+P   +N ++
Sbjct  256  ALGRPELADDPRFATNAARVQNRAELDAELAAWLATRTAAEWLALLAAAGVPAGPVNTVE  315

Query  181  GTLNHSHVQARGMVTEVDHPACGPVKLVNTPIKYSHATPGVRRPPPTLGQHT  232
              L+  H++ARGMV EVDHP  GPV +   P++ S     VRRP P LG+HT
Sbjct  316  EVLDDPHLRARGMVVEVDHPDYGPVPVPGLPVRLSGTPGRVRRPAPALGEHT  367



Lambda      K        H        a         alpha
   0.317    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00001116

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III. C...  86.9    1e-21


>CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III.  CoA-transferases 
are found in organisms from all lines of descent. 
Most of these enzymes belong to two well-known enzyme families, 
but recent work on unusual biochemical pathways of anaerobic 
bacteria has revealed the existence of a third family of 
CoA-transferases. The members of this enzyme family differ 
in sequence and reaction mechanism from CoA-transferases of 
the other families. Currently known enzymes of the new family 
are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: 
(R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: 
(R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: 
(R)-carnitine CoA-transferase. In addition, a large number 
of proteins of unknown or differently annotated function from 
Bacteria, Archaea and Eukarya apparently belong to this enzyme 
family. Properties and reaction mechanisms of the CoA-transferases 
of family III are described and compared to those 
of the previously known CoA-transferases.
Length=367

 Score = 86.9 bits (216),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 36/79 (46%), Positives = 47/79 (59%), Gaps = 0/79 (0%)

Query  1    MVEAEMGLMHITGSRDGDPVKVGVAVTDLTTGLYTSNAIMAALLARMRTGQGQHIDACLS  60
            + +A  GLM +TG   G PVKVG  V D+ TGL  + AI+AALLAR RTG+GQ ID  L 
Sbjct  137  IAQAMSGLMSLTGEPGGPPVKVGTPVGDIVTGLLAAIAILAALLARERTGKGQVIDVSLL  196

Query  61   DCQVATLANIASSALISGE  79
            +  +A +       L +G 
Sbjct  197  EAALALMGPQLLEYLATGR  215



Lambda      K        H        a         alpha
   0.318    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00001118

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III. C...  245     5e-81


>CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III.  CoA-transferases 
are found in organisms from all lines of descent. 
Most of these enzymes belong to two well-known enzyme families, 
but recent work on unusual biochemical pathways of anaerobic 
bacteria has revealed the existence of a third family of 
CoA-transferases. The members of this enzyme family differ 
in sequence and reaction mechanism from CoA-transferases of 
the other families. Currently known enzymes of the new family 
are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: 
(R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: 
(R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: 
(R)-carnitine CoA-transferase. In addition, a large number 
of proteins of unknown or differently annotated function from 
Bacteria, Archaea and Eukarya apparently belong to this enzyme 
family. Properties and reaction mechanisms of the CoA-transferases 
of family III are described and compared to those 
of the previously known CoA-transferases.
Length=367

 Score = 245 bits (627),  Expect = 5e-81, Method: Composition-based stats.
 Identities = 101/232 (44%), Positives = 134/232 (58%), Gaps = 1/232 (0%)

Query  1    MVEAEMGLMHITGSRDGDPVKVGVAVTDLTTGLYTSNAIMAALLARMRTGQGQHIDACLS  60
            + +A  GLM +TG   G PVKVG  V D+ TGL  + AI+AALLAR RTG+GQ ID  L 
Sbjct  137  IAQAMSGLMSLTGEPGGPPVKVGTPVGDIVTGLLAAIAILAALLARERTGKGQVIDVSLL  196

Query  61   DCQVATLANIASSALISGEKDSGRWGTAHPSIVPYRSYQTLDGDILFGGGNDRLFGVLCD  120
            +  +A +       L +G    GR G  HP+  PY  Y+T DG +    G D+ +  LC 
Sbjct  197  EAALALMGPQLLEYLATGR-VPGRVGNRHPAAAPYGLYRTADGWVAIAAGTDKQWARLCR  255

Query  121  RLGFPEWKTDPRFITNRDRVKHREELDDLIEKRVKQKTTQEWLEILEGSGMPYAAINDIQ  180
             LG PE   DPRF TN  RV++R ELD  +   +  +T  EWL +L  +G+P   +N ++
Sbjct  256  ALGRPELADDPRFATNAARVQNRAELDAELAAWLATRTAAEWLALLAAAGVPAGPVNTVE  315

Query  181  GTLNHSHGQARGMVTEVDHPACGPVKLVNTPIKYSHATPGVRRPPPTLGQHT  232
              L+  H +ARGMV EVDHP  GPV +   P++ S     VRRP P LG+HT
Sbjct  316  EVLDDPHLRARGMVVEVDHPDYGPVPVPGLPVRLSGTPGRVRRPAPALGEHT  367



Lambda      K        H        a         alpha
   0.318    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00006981

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III. C...  247     3e-82


>CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III.  CoA-transferases 
are found in organisms from all lines of descent. 
Most of these enzymes belong to two well-known enzyme families, 
but recent work on unusual biochemical pathways of anaerobic 
bacteria has revealed the existence of a third family of 
CoA-transferases. The members of this enzyme family differ 
in sequence and reaction mechanism from CoA-transferases of 
the other families. Currently known enzymes of the new family 
are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: 
(R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: 
(R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: 
(R)-carnitine CoA-transferase. In addition, a large number 
of proteins of unknown or differently annotated function from 
Bacteria, Archaea and Eukarya apparently belong to this enzyme 
family. Properties and reaction mechanisms of the CoA-transferases 
of family III are described and compared to those 
of the previously known CoA-transferases.
Length=367

 Score = 247 bits (634),  Expect = 3e-82, Method: Composition-based stats.
 Identities = 101/232 (44%), Positives = 135/232 (58%), Gaps = 1/232 (0%)

Query  1    MVEAEMGLMHITGSRDGDPVKVGVAVTDLTTGLYTSNAIMAALLARMRTGQGQHIDACLS  60
            + +A  GLM +TG   G PVKVG  V D+ TGL  + AI+AALLAR RTG+GQ ID  L 
Sbjct  137  IAQAMSGLMSLTGEPGGPPVKVGTPVGDIVTGLLAAIAILAALLARERTGKGQVIDVSLL  196

Query  61   DCQVATLANIASSALISGEKDSGRWGTAHPSIVPYRSYQTLDGDILFGGGNDRLFGVLCD  120
            +  +A +       L +G    GR G  HP+  PY  Y+T DG +    G D+ +  LC 
Sbjct  197  EAALALMGPQLLEYLATGR-VPGRVGNRHPAAAPYGLYRTADGWVAIAAGTDKQWARLCR  255

Query  121  RLGFPEWKTDPRFITNRDRVKHREELDDLIEKRVKQKTTQEWLEILEGSGMPYAAINDIQ  180
             LG PE   DPRF TN  RV++R ELD  +   +  +T  EWL +L  +G+P   +N ++
Sbjct  256  ALGRPELADDPRFATNAARVQNRAELDAELAAWLATRTAAEWLALLAAAGVPAGPVNTVE  315

Query  181  GTLNHSHVQARGMVTEVDHPACGPVKLVNTPIKYSHATPGVRRPPPTLGQHT  232
              L+  H++ARGMV EVDHP  GPV +   P++ S     VRRP P LG+HT
Sbjct  316  EVLDDPHLRARGMVVEVDHPDYGPVPVPGLPVRLSGTPGRVRRPAPALGEHT  367



Lambda      K        H        a         alpha
   0.318    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00006980

Length=425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III. C...  463     9e-164


>CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III.  CoA-transferases 
are found in organisms from all lines of descent. 
Most of these enzymes belong to two well-known enzyme families, 
but recent work on unusual biochemical pathways of anaerobic 
bacteria has revealed the existence of a third family of 
CoA-transferases. The members of this enzyme family differ 
in sequence and reaction mechanism from CoA-transferases of 
the other families. Currently known enzymes of the new family 
are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: 
(R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: 
(R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: 
(R)-carnitine CoA-transferase. In addition, a large number 
of proteins of unknown or differently annotated function from 
Bacteria, Archaea and Eukarya apparently belong to this enzyme 
family. Properties and reaction mechanisms of the CoA-transferases 
of family III are described and compared to those 
of the previously known CoA-transferases.
Length=367

 Score = 463 bits (1193),  Expect = 9e-164, Method: Composition-based stats.
 Identities = 181/378 (48%), Positives = 237/378 (63%), Gaps = 11/378 (3%)

Query  45   LKGIRVLDMTRVLAGPYCTQILGDLGADIIKVEHPVRGDDTRAWGPPYAKYIDGSHDGPG  104
            L GIRVLD+T+V+AGP+ T +L DLGA++IKVE P  GD TR  GP             G
Sbjct  1    LAGIRVLDLTQVVAGPFATMLLADLGAEVIKVEPP-GGDPTRYVGPY---------AEKG  50

Query  105  ESAYFLAVNRNKRSIGLSFAHKSGVEILHKLAKECDVLVENYLPGTLKKYGLDYETLRSI  164
             SAYFL+VNRNKRS+ L    + G E+L +L    DV++EN+ PG L++ GL YE LR+I
Sbjct  51   GSAYFLSVNRNKRSVALDLKSEEGREVLRRLVARADVVIENFRPGVLERLGLGYEDLRAI  110

Query  165  NPRLIYASITGYGQTGPYSNRAGYDVMVEAEMGLMHITGSRDGDPVKVGVAVTDLTTGLY  224
            NPRLIY S++GYGQTGPY++R GYD++ +A  GLM +TG   G PVKVG  V D+ TGL 
Sbjct  111  NPRLIYCSVSGYGQTGPYADRPGYDLIAQAMSGLMSLTGEPGGPPVKVGTPVGDIVTGLL  170

Query  225  TSNAIMAALLARMRTGQGQHIDACLSDCQVATLANIASSALISGEKDSGRWGTAHPSIVP  284
             + AI+AALLAR RTG+GQ ID  L +  +A +       L +G    GR G  HP+  P
Sbjct  171  AAIAILAALLARERTGKGQVIDVSLLEAALALMGPQLLEYLATGR-VPGRVGNRHPAAAP  229

Query  285  YRSYQTLDGDILFGGGNDRLFGVLCDRLGFPEWKTDPRFITNRDRVKHREELDDLIEKRV  344
            Y  Y+T DG +    G D+ +  LC  LG PE   DPRF TN  RV++R ELD  +   +
Sbjct  230  YGLYRTADGWVAIAAGTDKQWARLCRALGRPELADDPRFATNAARVQNRAELDAELAAWL  289

Query  345  KQKTTQEWLEILEGSGMPYAAINDIQGTLNHSHGQARGMVTEVDHPACGPVKLVNTPIKY  404
              +T  EWL +L  +G+P   +N ++  L+  H +ARGMV EVDHP  GPV +   P++ 
Sbjct  290  ATRTAAEWLALLAAAGVPAGPVNTVEEVLDDPHLRARGMVVEVDHPDYGPVPVPGLPVRL  349

Query  405  SHATPGVRRPPPTLGQHT  422
            S     VRRP P LG+HT
Sbjct  350  SGTPGRVRRPAPALGEHT  367



Lambda      K        H        a         alpha
   0.318    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521922912


Query= TCONS_00001119

Length=111
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III. C...  89.2    5e-23


>CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III.  CoA-transferases 
are found in organisms from all lines of descent. 
Most of these enzymes belong to two well-known enzyme families, 
but recent work on unusual biochemical pathways of anaerobic 
bacteria has revealed the existence of a third family of 
CoA-transferases. The members of this enzyme family differ 
in sequence and reaction mechanism from CoA-transferases of 
the other families. Currently known enzymes of the new family 
are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: 
(R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: 
(R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: 
(R)-carnitine CoA-transferase. In addition, a large number 
of proteins of unknown or differently annotated function from 
Bacteria, Archaea and Eukarya apparently belong to this enzyme 
family. Properties and reaction mechanisms of the CoA-transferases 
of family III are described and compared to those 
of the previously known CoA-transferases.
Length=367

 Score = 89.2 bits (222),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 10/67 (15%)

Query  45   LKGIRVLDMTRVLAGPYCTQILGDLGADIIKVEHPVRGDDTRAWGPPYAKYIDGSHDGPG  104
            L GIRVLD+T+V+AGP+ T +L DLGA++IKVE P  GD TR  GP             G
Sbjct  1    LAGIRVLDLTQVVAGPFATMLLADLGAEVIKVEPP-GGDPTRYVGPY---------AEKG  50

Query  105  ESAYFLA  111
             SAYFL+
Sbjct  51   GSAYFLS  57



Lambda      K        H        a         alpha
   0.321    0.140    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00001120

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III. C...  459     7e-162


>CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III.  CoA-transferases 
are found in organisms from all lines of descent. 
Most of these enzymes belong to two well-known enzyme families, 
but recent work on unusual biochemical pathways of anaerobic 
bacteria has revealed the existence of a third family of 
CoA-transferases. The members of this enzyme family differ 
in sequence and reaction mechanism from CoA-transferases of 
the other families. Currently known enzymes of the new family 
are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: 
(R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: 
(R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: 
(R)-carnitine CoA-transferase. In addition, a large number 
of proteins of unknown or differently annotated function from 
Bacteria, Archaea and Eukarya apparently belong to this enzyme 
family. Properties and reaction mechanisms of the CoA-transferases 
of family III are described and compared to those 
of the previously known CoA-transferases.
Length=367

 Score = 459 bits (1183),  Expect = 7e-162, Method: Composition-based stats.
 Identities = 180/389 (46%), Positives = 237/389 (61%), Gaps = 22/389 (6%)

Query  35   LKGIRVLDMTRVLAGPYCTQILGDLGADIIKVEHPVRGDDTRAWGPPYAKYIDGSHDGPG  94
            L GIRVLD+T+V+AGP+ T +L DLGA++IKVE P  GD TR  GP             G
Sbjct  1    LAGIRVLDLTQVVAGPFATMLLADLGAEVIKVEPP-GGDPTRYVGPY---------AEKG  50

Query  95   ESAYFLAVNRNKRSIGLSFAHKSGVEILHKLAKECDVLVENYLPGTLKKYGLDYETLRSI  154
             SAYFL+VNRNKRS+ L    + G E+L +L    DV++EN+ PG L++ GL YE LR+I
Sbjct  51   GSAYFLSVNRNKRSVALDLKSEEGREVLRRLVARADVVIENFRPGVLERLGLGYEDLRAI  110

Query  155  NPRLIYASITGYGQTGPYSNRAGYDVMVEAEMGLMHITGSRDGDPVKVGVAVTDLTTGLY  214
            NPRLIY S++GYGQTGPY++R GYD++ +A  GLM +TG   G PVKVG  V D+ TGL 
Sbjct  111  NPRLIYCSVSGYGQTGPYADRPGYDLIAQAMSGLMSLTGEPGGPPVKVGTPVGDIVTGLL  170

Query  215  TSNAIMAALLARMRTGQGQHIDACLSDCQVATLANIASSALISGEKDSGRWGTAHRKLMD  274
             + AI+AALLAR RTG+GQ ID  L +  +A +       L +G    GR G  H     
Sbjct  171  AAIAILAALLARERTGKGQVIDVSLLEAALALMGPQLLEYLATGR-VPGRVGNRHP----  225

Query  275  MVLPALASIVPYRSYQTLDGDILFGGGNDRLFGVLCDRLGFPEWKTDPRFITNRDRVKHR  334
                   +  PY  Y+T DG +    G D+ +  LC  LG PE   DPRF TN  RV++R
Sbjct  226  -------AAAPYGLYRTADGWVAIAAGTDKQWARLCRALGRPELADDPRFATNAARVQNR  278

Query  335  EELDDLIEKRVKQKTTQEWLEILEGSGMPYAAINDIQGTLNHSHVQARGMVTEVDHPACG  394
             ELD  +   +  +T  EWL +L  +G+P   +N ++  L+  H++ARGMV EVDHP  G
Sbjct  279  AELDAELAAWLATRTAAEWLALLAAAGVPAGPVNTVEEVLDDPHLRARGMVVEVDHPDYG  338

Query  395  PVKLVNTPIKYSHATPGVRRPPPTLGQHT  423
            PV +   P++ S     VRRP P LG+HT
Sbjct  339  PVPVPGLPVRLSGTPGRVRRPAPALGEHT  367



Lambda      K        H        a         alpha
   0.319    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00001121

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III. C...  250     1e-82


>CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III.  CoA-transferases 
are found in organisms from all lines of descent. 
Most of these enzymes belong to two well-known enzyme families, 
but recent work on unusual biochemical pathways of anaerobic 
bacteria has revealed the existence of a third family of 
CoA-transferases. The members of this enzyme family differ 
in sequence and reaction mechanism from CoA-transferases of 
the other families. Currently known enzymes of the new family 
are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: 
(R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: 
(R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: 
(R)-carnitine CoA-transferase. In addition, a large number 
of proteins of unknown or differently annotated function from 
Bacteria, Archaea and Eukarya apparently belong to this enzyme 
family. Properties and reaction mechanisms of the CoA-transferases 
of family III are described and compared to those 
of the previously known CoA-transferases.
Length=367

 Score = 250 bits (640),  Expect = 1e-82, Method: Composition-based stats.
 Identities = 101/232 (44%), Positives = 135/232 (58%), Gaps = 1/232 (0%)

Query  1    MVEAEMGLMHITGSRDGDPVKVGVAVTDLTTGLYTSNAIMAALLARMRTGQGQHIDACLS  60
            + +A  GLM +TG   G PVKVG  V D+ TGL  + AI+AALLAR RTG+GQ ID  L 
Sbjct  137  IAQAMSGLMSLTGEPGGPPVKVGTPVGDIVTGLLAAIAILAALLARERTGKGQVIDVSLL  196

Query  61   DCQVATLANIASSALISGEKDSGRWGTAHPSIVPYRSYQTLDGDILFGGGNDRLFGVLCD  120
            +  +A +       L +G    GR G  HP+  PY  Y+T DG +    G D+ +  LC 
Sbjct  197  EAALALMGPQLLEYLATGR-VPGRVGNRHPAAAPYGLYRTADGWVAIAAGTDKQWARLCR  255

Query  121  RLGFPEWKTDPRFITNRDRVKHREELDDLIEKRVKQKTTQEWLEILEGSGMPYAAINDIQ  180
             LG PE   DPRF TN  RV++R ELD  +   +  +T  EWL +L  +G+P   +N ++
Sbjct  256  ALGRPELADDPRFATNAARVQNRAELDAELAAWLATRTAAEWLALLAAAGVPAGPVNTVE  315

Query  181  GTLNHSHVQARGMVTEVDHPACGPVKLVNTPIKYSHATPGVRRPPPTLGQHT  232
              L+  H++ARGMV EVDHP  GPV +   P++ S     VRRP P LG+HT
Sbjct  316  EVLDDPHLRARGMVVEVDHPDYGPVPVPGLPVRLSGTPGRVRRPAPALGEHT  367



Lambda      K        H        a         alpha
   0.317    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00001122

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III. C...  86.9    1e-21


>CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III.  CoA-transferases 
are found in organisms from all lines of descent. 
Most of these enzymes belong to two well-known enzyme families, 
but recent work on unusual biochemical pathways of anaerobic 
bacteria has revealed the existence of a third family of 
CoA-transferases. The members of this enzyme family differ 
in sequence and reaction mechanism from CoA-transferases of 
the other families. Currently known enzymes of the new family 
are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: 
(R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: 
(R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: 
(R)-carnitine CoA-transferase. In addition, a large number 
of proteins of unknown or differently annotated function from 
Bacteria, Archaea and Eukarya apparently belong to this enzyme 
family. Properties and reaction mechanisms of the CoA-transferases 
of family III are described and compared to those 
of the previously known CoA-transferases.
Length=367

 Score = 86.9 bits (216),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 36/79 (46%), Positives = 47/79 (59%), Gaps = 0/79 (0%)

Query  1    MVEAEMGLMHITGSRDGDPVKVGVAVTDLTTGLYTSNAIMAALLARMRTGQGQHIDACLS  60
            + +A  GLM +TG   G PVKVG  V D+ TGL  + AI+AALLAR RTG+GQ ID  L 
Sbjct  137  IAQAMSGLMSLTGEPGGPPVKVGTPVGDIVTGLLAAIAILAALLARERTGKGQVIDVSLL  196

Query  61   DCQVATLANIASSALISGE  79
            +  +A +       L +G 
Sbjct  197  EAALALMGPQLLEYLATGR  215



Lambda      K        H        a         alpha
   0.318    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00006982

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427753 pfam04158, Sof1, Sof1-like domain. Sof1 is essential f...  154     2e-47


>CDD:427753 pfam04158, Sof1, Sof1-like domain.  Sof1 is essential for cell 
growth and is a component of the nucleolar rRNA processing 
machinery.
Length=87

 Score = 154 bits (393),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 50/88 (57%), Positives = 67/88 (76%), Gaps = 1/88 (1%)

Query  314  ANASDRSGIKSARQRQKLEYDQALITRYSHMPEIRRIKRQRHVPRTVKKAAEIKREELAA  373
            ANAS++ G+ S R+R  LEY++AL  +Y HMPEIRRI R RHVP+ + KA +IKRE L A
Sbjct  1    ANASEKLGVLSPRERAALEYNEALKEKYKHMPEIRRIARHRHVPKAIYKAQKIKREMLEA  60

Query  374  IKRREENVRKHAKKGALPPRRSEREKMI  401
             KR+EEN RKH+K G++ PR+ ER+K +
Sbjct  61   RKRKEENRRKHSKPGSV-PRKPERKKHV  87



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00001124

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427753 pfam04158, Sof1, Sof1-like domain. Sof1 is essential f...  154     2e-47


>CDD:427753 pfam04158, Sof1, Sof1-like domain.  Sof1 is essential for cell 
growth and is a component of the nucleolar rRNA processing 
machinery.
Length=87

 Score = 154 bits (393),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 50/88 (57%), Positives = 67/88 (76%), Gaps = 1/88 (1%)

Query  314  ANASDRSGIKSARQRQKLEYDQALITRYSHMPEIRRIKRQRHVPRTVKKAAEIKREELAA  373
            ANAS++ G+ S R+R  LEY++AL  +Y HMPEIRRI R RHVP+ + KA +IKRE L A
Sbjct  1    ANASEKLGVLSPRERAALEYNEALKEKYKHMPEIRRIARHRHVPKAIYKAQKIKREMLEA  60

Query  374  IKRREENVRKHAKKGALPPRRSEREKMI  401
             KR+EEN RKH+K G++ PR+ ER+K +
Sbjct  61   RKRKEENRRKHSKPGSV-PRKPERKKHV  87



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00001125

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427753 pfam04158, Sof1, Sof1-like domain. Sof1 is essential f...  154     2e-47


>CDD:427753 pfam04158, Sof1, Sof1-like domain.  Sof1 is essential for cell 
growth and is a component of the nucleolar rRNA processing 
machinery.
Length=87

 Score = 154 bits (393),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 50/88 (57%), Positives = 67/88 (76%), Gaps = 1/88 (1%)

Query  314  ANASDRSGIKSARQRQKLEYDQALITRYSHMPEIRRIKRQRHVPRTVKKAAEIKREELAA  373
            ANAS++ G+ S R+R  LEY++AL  +Y HMPEIRRI R RHVP+ + KA +IKRE L A
Sbjct  1    ANASEKLGVLSPRERAALEYNEALKEKYKHMPEIRRIARHRHVPKAIYKAQKIKREMLEA  60

Query  374  IKRREENVRKHAKKGALPPRRSEREKMI  401
             KR+EEN RKH+K G++ PR+ ER+K +
Sbjct  61   RKRKEENRRKHSKPGSV-PRKPERKKHV  87



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00001126

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465630 pfam18055, RPN6_N, 26S proteasome regulatory subunit R...  205     1e-65
CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  97.7    3e-25


>CDD:465630 pfam18055, RPN6_N, 26S proteasome regulatory subunit RPN6 N-terminal 
domain.  This is the N-terminal domain found in RPN6 
proteins (26S proteasome regulatory subunit). The 26S proteasome 
holocomplex consists of a 28-subunit barrel-shaped core 
particle (CP) in the center capped at the top and bottom by 
19-subunit regulatory particles (RPs). The CP forms the catalytic 
chamber and the RP is formed from two subcomplexes known 
as the lid and the base. The lid comprises nine Rpn subunits 
in yeast (Rpn3/5/6/7/8/9/11/12/15) and the base comprises 
three Rpn subunits (Rpn1/2/13) and six ATPases (Rpt1-6). 
Phosphorylation of Rpn6 enhances proteasome ATPase activity 
and promotes the formation of doubly capped (30S) proteasome, 
hence accelerating the degradation of short-lived proteins.
Length=117

 Score = 205 bits (523),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 74/117 (63%), Positives = 96/117 (82%), Gaps = 0/117 (0%)

Query  61   ARALAKKDASKAESIYKDILSQGPGSTETSSRDYENALIGLGELYRDEKKPQEIAELIKT  120
            AR LAK D +KAE++YK+ILS+ PG+ E + R+ E AL+ LGELYRD+K  +E+AELI +
Sbjct  1    ARELAKSDPAKAEALYKEILSKDPGTDEAALREQEQALLELGELYRDQKNAEELAELITS  60

Query  121  SRDTFSSFAKAKTAKLVRQLLDLFSEIPNTLDIQVAVIKSCIDWAVSERRSFLRQNL  177
            SR   SSFAKAKTAKLVR L+DLFS+IPN+LD+Q+ V K CI+WA SE+R+FLRQ+L
Sbjct  61   SRPFLSSFAKAKTAKLVRTLIDLFSDIPNSLDLQIEVCKECIEWAKSEKRTFLRQSL  117


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 97.7 bits (244),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 0/105 (0%)

Query  333  EAMKAVARAHANRSLEEYEKALSDYRYELGSDVFIRNHLRRLYDAMLEQNLIKVIEPFSR  392
             A + + RA  +  L E+E+ L+DY+ EL  D  +  HL  L   + E NL ++ +P+S 
Sbjct  1    PAYRDLLRAFYSGDLSEFEEILADYKEELLLDDGLAEHLEDLRRKIREHNLRQLSKPYSS  60

Query  393  VELDHIAKMVGLDTQQVERKLSQMILDKVIVGVLDQGAGCLIVYD  437
            + L  +AK++GL   +VE+ L+++I D  I   +DQ  G ++   
Sbjct  61   ISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVFSK  105



Lambda      K        H        a         alpha
   0.317    0.130    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00001127

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  95.4    2e-25


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 95.4 bits (238),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 0/105 (0%)

Query  148  EAMKAVARAHANRSLEEYEKALSDYRYELGSDVFIRNHLRRLYDAMLEQNLIKVIEPFSR  207
             A + + RA  +  L E+E+ L+DY+ EL  D  +  HL  L   + E NL ++ +P+S 
Sbjct  1    PAYRDLLRAFYSGDLSEFEEILADYKEELLLDDGLAEHLEDLRRKIREHNLRQLSKPYSS  60

Query  208  VELDHIAKMVGLDTQQVERKLSQMILDKVIVGVLDQGAGCLIVYD  252
            + L  +AK++GL   +VE+ L+++I D  I   +DQ  G ++   
Sbjct  61   ISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVFSK  105



Lambda      K        H        a         alpha
   0.318    0.132    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00006983

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465630 pfam18055, RPN6_N, 26S proteasome regulatory subunit R...  201     6e-65
CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  96.5    6e-25


>CDD:465630 pfam18055, RPN6_N, 26S proteasome regulatory subunit RPN6 N-terminal 
domain.  This is the N-terminal domain found in RPN6 
proteins (26S proteasome regulatory subunit). The 26S proteasome 
holocomplex consists of a 28-subunit barrel-shaped core 
particle (CP) in the center capped at the top and bottom by 
19-subunit regulatory particles (RPs). The CP forms the catalytic 
chamber and the RP is formed from two subcomplexes known 
as the lid and the base. The lid comprises nine Rpn subunits 
in yeast (Rpn3/5/6/7/8/9/11/12/15) and the base comprises 
three Rpn subunits (Rpn1/2/13) and six ATPases (Rpt1-6). 
Phosphorylation of Rpn6 enhances proteasome ATPase activity 
and promotes the formation of doubly capped (30S) proteasome, 
hence accelerating the degradation of short-lived proteins.
Length=117

 Score = 201 bits (515),  Expect = 6e-65, Method: Composition-based stats.
 Identities = 74/117 (63%), Positives = 96/117 (82%), Gaps = 0/117 (0%)

Query  14   ARALAKKDASKAESIYKDILSQGPGSTETSSRDYENALIGLGELYRDEKKPQEIAELIKT  73
            AR LAK D +KAE++YK+ILS+ PG+ E + R+ E AL+ LGELYRD+K  +E+AELI +
Sbjct  1    ARELAKSDPAKAEALYKEILSKDPGTDEAALREQEQALLELGELYRDQKNAEELAELITS  60

Query  74   SRDTFSSFAKAKTAKLVRQLLDLFSEIPNTLDIQVAVIKSCIDWAVSERRSFLRQNL  130
            SR   SSFAKAKTAKLVR L+DLFS+IPN+LD+Q+ V K CI+WA SE+R+FLRQ+L
Sbjct  61   SRPFLSSFAKAKTAKLVRTLIDLFSDIPNSLDLQIEVCKECIEWAKSEKRTFLRQSL  117


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 96.5 bits (241),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 0/105 (0%)

Query  286  EAMKAVARAHANRSLEEYEKALSDYRYELGSDVFIRNHLRRLYDAMLEQNLIKVIEPFSR  345
             A + + RA  +  L E+E+ L+DY+ EL  D  +  HL  L   + E NL ++ +P+S 
Sbjct  1    PAYRDLLRAFYSGDLSEFEEILADYKEELLLDDGLAEHLEDLRRKIREHNLRQLSKPYSS  60

Query  346  VELDHIAKMVGLDTQQVERKLSQMILDKVIVGVLDQGAGCLIVYD  390
            + L  +AK++GL   +VE+ L+++I D  I   +DQ  G ++   
Sbjct  61   ISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVFSK  105



Lambda      K        H        a         alpha
   0.316    0.130    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00001128

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465630 pfam18055, RPN6_N, 26S proteasome regulatory subunit R...  201     6e-65
CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  96.5    6e-25


>CDD:465630 pfam18055, RPN6_N, 26S proteasome regulatory subunit RPN6 N-terminal 
domain.  This is the N-terminal domain found in RPN6 
proteins (26S proteasome regulatory subunit). The 26S proteasome 
holocomplex consists of a 28-subunit barrel-shaped core 
particle (CP) in the center capped at the top and bottom by 
19-subunit regulatory particles (RPs). The CP forms the catalytic 
chamber and the RP is formed from two subcomplexes known 
as the lid and the base. The lid comprises nine Rpn subunits 
in yeast (Rpn3/5/6/7/8/9/11/12/15) and the base comprises 
three Rpn subunits (Rpn1/2/13) and six ATPases (Rpt1-6). 
Phosphorylation of Rpn6 enhances proteasome ATPase activity 
and promotes the formation of doubly capped (30S) proteasome, 
hence accelerating the degradation of short-lived proteins.
Length=117

 Score = 201 bits (515),  Expect = 6e-65, Method: Composition-based stats.
 Identities = 74/117 (63%), Positives = 96/117 (82%), Gaps = 0/117 (0%)

Query  14   ARALAKKDASKAESIYKDILSQGPGSTETSSRDYENALIGLGELYRDEKKPQEIAELIKT  73
            AR LAK D +KAE++YK+ILS+ PG+ E + R+ E AL+ LGELYRD+K  +E+AELI +
Sbjct  1    ARELAKSDPAKAEALYKEILSKDPGTDEAALREQEQALLELGELYRDQKNAEELAELITS  60

Query  74   SRDTFSSFAKAKTAKLVRQLLDLFSEIPNTLDIQVAVIKSCIDWAVSERRSFLRQNL  130
            SR   SSFAKAKTAKLVR L+DLFS+IPN+LD+Q+ V K CI+WA SE+R+FLRQ+L
Sbjct  61   SRPFLSSFAKAKTAKLVRTLIDLFSDIPNSLDLQIEVCKECIEWAKSEKRTFLRQSL  117


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 96.5 bits (241),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 0/105 (0%)

Query  286  EAMKAVARAHANRSLEEYEKALSDYRYELGSDVFIRNHLRRLYDAMLEQNLIKVIEPFSR  345
             A + + RA  +  L E+E+ L+DY+ EL  D  +  HL  L   + E NL ++ +P+S 
Sbjct  1    PAYRDLLRAFYSGDLSEFEEILADYKEELLLDDGLAEHLEDLRRKIREHNLRQLSKPYSS  60

Query  346  VELDHIAKMVGLDTQQVERKLSQMILDKVIVGVLDQGAGCLIVYD  390
            + L  +AK++GL   +VE+ L+++I D  I   +DQ  G ++   
Sbjct  61   ISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVFSK  105



Lambda      K        H        a         alpha
   0.316    0.130    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00001129

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460488 pfam02201, SWIB, SWIB/MDM2 domain. This family include...  90.2    2e-23


>CDD:460488 pfam02201, SWIB, SWIB/MDM2 domain.  This family includes the 
SWIB domain and the MDM2 domain. The p53-associated protein 
(MDM2) is an inhibitor of the p53 tumor suppressor gene binding 
the transactivation domain and down regulating the ability 
of p53 to activate transcription. This family contains the 
p53 binding domain of MDM2.
Length=73

 Score = 90.2 bits (225),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 38/58 (66%), Gaps = 0/58 (0%)

Query  284  ERYKLSKELAEVLDVEEETRSGIVLGIWDYIRAMGLQEDEEKRLVRCDHRLRAVCPMD  341
            + +KLS ELAE+L  EE +R  +V  +W+YI+   LQ+ E+KR + CD +L+ +   D
Sbjct  1    KPFKLSPELAELLGEEELSRPEVVKALWEYIKENNLQDPEDKREIICDEKLKKLFGGD  58



Lambda      K        H        a         alpha
   0.313    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00001130

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460488 pfam02201, SWIB, SWIB/MDM2 domain. This family include...  115     4e-32


>CDD:460488 pfam02201, SWIB, SWIB/MDM2 domain.  This family includes the 
SWIB domain and the MDM2 domain. The p53-associated protein 
(MDM2) is an inhibitor of the p53 tumor suppressor gene binding 
the transactivation domain and down regulating the ability 
of p53 to activate transcription. This family contains the 
p53 binding domain of MDM2.
Length=73

 Score = 115 bits (291),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 30/72 (42%), Positives = 50/72 (69%), Gaps = 0/72 (0%)

Query  252  ERYKLSKELAEVLDVEEETRSGIVLGIWDYIRAMGLQEDEEKRLVRCDHRLRAIFGRDQM  311
            + +KLS ELAE+L  EE +R  +V  +W+YI+   LQ+ E+KR + CD +L+ +FG D++
Sbjct  1    KPFKLSPELAELLGEEELSRPEVVKALWEYIKENNLQDPEDKREIICDEKLKKLFGGDRV  60

Query  312  FFPQIPESIGPH  323
             F ++P+ + PH
Sbjct  61   KFFEMPKLLSPH  72



Lambda      K        H        a         alpha
   0.314    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00001131

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460488 pfam02201, SWIB, SWIB/MDM2 domain. This family include...  90.6    1e-23


>CDD:460488 pfam02201, SWIB, SWIB/MDM2 domain.  This family includes the 
SWIB domain and the MDM2 domain. The p53-associated protein 
(MDM2) is an inhibitor of the p53 tumor suppressor gene binding 
the transactivation domain and down regulating the ability 
of p53 to activate transcription. This family contains the 
p53 binding domain of MDM2.
Length=73

 Score = 90.6 bits (226),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 38/58 (66%), Gaps = 0/58 (0%)

Query  285  ERYKLSKELAEVLDVEEETRSGIVLGIWDYIRAMGLQEDEEKRLVRCDHRLRAVCPMD  342
            + +KLS ELAE+L  EE +R  +V  +W+YI+   LQ+ E+KR + CD +L+ +   D
Sbjct  1    KPFKLSPELAELLGEEELSRPEVVKALWEYIKENNLQDPEDKREIICDEKLKKLFGGD  58



Lambda      K        H        a         alpha
   0.313    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00006985

Length=1573


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.125    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2000161988


Query= TCONS_00001132

Length=1686


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2120995864


Query= TCONS_00001133

Length=1085


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.125    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1379483144


Query= TCONS_00001136

Length=132
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460322 pfam01777, Ribosomal_L27e, Ribosomal L27e protein fami...  135     2e-43


>CDD:460322 pfam01777, Ribosomal_L27e, Ribosomal L27e protein family.  The 
N-terminal region of the eukaryotic ribosomal L27 has the 
KOW motif. C-terminal region is represented by this family.
Length=85

 Score = 135 bits (342),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 73/85 (86%), Gaps = 0/85 (0%)

Query  48   KVTRRMGKKMVEKRSRIKPFIKIVNYNHLMPTRYTLELEGLKGAISQETFKEVSTREDAK  107
            KVT++M KK + KRS++KPF+K+VNYNHLMPTRYT+++E LKG ++++TFK+ S R++A+
Sbjct  1    KVTKKMSKKKIAKRSKVKPFVKVVNYNHLMPTRYTVDVEDLKGVVTKDTFKDPSKRKEAR  60

Query  108  KTVKKALEDRYTSGKNRWFFTPLRF  132
            K VKK  E+RY +GKN+WFFT LRF
Sbjct  61   KEVKKKFEERYKTGKNKWFFTKLRF  85



Lambda      K        H        a         alpha
   0.321    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00001134

Length=186
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460322 pfam01777, Ribosomal_L27e, Ribosomal L27e protein fami...  141     7e-45


>CDD:460322 pfam01777, Ribosomal_L27e, Ribosomal L27e protein family.  The 
N-terminal region of the eukaryotic ribosomal L27 has the 
KOW motif. C-terminal region is represented by this family.
Length=85

 Score = 141 bits (358),  Expect = 7e-45, Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 73/85 (86%), Gaps = 0/85 (0%)

Query  102  KVTRRMGKKMVEKRSRIKPFIKIVNYNHLMPTRYTLELEGLKGAISQETFKEVSTREDAK  161
            KVT++M KK + KRS++KPF+K+VNYNHLMPTRYT+++E LKG ++++TFK+ S R++A+
Sbjct  1    KVTKKMSKKKIAKRSKVKPFVKVVNYNHLMPTRYTVDVEDLKGVVTKDTFKDPSKRKEAR  60

Query  162  KTVKKALEDRYTSGKNRWFFTPLRF  186
            K VKK  E+RY +GKN+WFFT LRF
Sbjct  61   KEVKKKFEERYKTGKNKWFFTKLRF  85



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00006986

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460322 pfam01777, Ribosomal_L27e, Ribosomal L27e protein fami...  141     1e-44


>CDD:460322 pfam01777, Ribosomal_L27e, Ribosomal L27e protein family.  The 
N-terminal region of the eukaryotic ribosomal L27 has the 
KOW motif. C-terminal region is represented by this family.
Length=85

 Score = 141 bits (357),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 73/85 (86%), Gaps = 0/85 (0%)

Query  97   KVTRRMGKKMVEKRSRIKPFIKIVNYNHLMPTRYTLELEGLKGAISQETFKEVSTREDAK  156
            KVT++M KK + KRS++KPF+K+VNYNHLMPTRYT+++E LKG ++++TFK+ S R++A+
Sbjct  1    KVTKKMSKKKIAKRSKVKPFVKVVNYNHLMPTRYTVDVEDLKGVVTKDTFKDPSKRKEAR  60

Query  157  KTVKKALEDRYTSGKNRWFFTPLRF  181
            K VKK  E+RY +GKN+WFFT LRF
Sbjct  61   KEVKKKFEERYKTGKNKWFFTKLRF  85



Lambda      K        H        a         alpha
   0.320    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00001135

Length=132
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460322 pfam01777, Ribosomal_L27e, Ribosomal L27e protein fami...  135     2e-43


>CDD:460322 pfam01777, Ribosomal_L27e, Ribosomal L27e protein family.  The 
N-terminal region of the eukaryotic ribosomal L27 has the 
KOW motif. C-terminal region is represented by this family.
Length=85

 Score = 135 bits (342),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 73/85 (86%), Gaps = 0/85 (0%)

Query  48   KVTRRMGKKMVEKRSRIKPFIKIVNYNHLMPTRYTLELEGLKGAISQETFKEVSTREDAK  107
            KVT++M KK + KRS++KPF+K+VNYNHLMPTRYT+++E LKG ++++TFK+ S R++A+
Sbjct  1    KVTKKMSKKKIAKRSKVKPFVKVVNYNHLMPTRYTVDVEDLKGVVTKDTFKDPSKRKEAR  60

Query  108  KTVKKALEDRYTSGKNRWFFTPLRF  132
            K VKK  E+RY +GKN+WFFT LRF
Sbjct  61   KEVKKKFEERYKTGKNKWFFTKLRF  85



Lambda      K        H        a         alpha
   0.321    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00001137

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00001138

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00006987

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426270 pfam01454, MAGE, MAGE family. The MAGE (melanoma antig...  233     6e-77


>CDD:426270 pfam01454, MAGE, MAGE family.  The MAGE (melanoma antigen-encoding 
gene) family are expressed in a wide variety of tumors 
but not in normal cells, with the exception of the male germ 
cells, placenta, and, possibly, cells of the developing embryo. 
The cellular function of this family is unknown. This 
family also contains the yeast protein, Nse3. The Nse3 protein 
is part of the Smc5-6 complex. Nse3 has been demonstrated 
to be important for meiosis.
Length=205

 Score = 233 bits (596),  Expect = 6e-77, Method: Composition-based stats.
 Identities = 107/209 (51%), Positives = 130/209 (62%), Gaps = 22/209 (11%)

Query  68   LVRLALASELSRQPIRRTDISTKVLGEQGSRQFKIVFEMAQKTLRETFGMQLAELPVKEK  127
            LVR ALA E  R PIRR DIS KVLGE   R FK VFE AQK LR+ FGM+L ELP KE+
Sbjct  1    LVRYALACEYQRTPIRREDISKKVLGENRKRLFKKVFEEAQKILRDVFGMELVELPAKEE  60

Query  128  ----VTIQQRRAAQKVDRPSSTNKSWILTSTLPLAYRKPEILPPTRAP------LEGTYT  177
                VT QQRRAA K    SS +KS+IL STLP  YR P I+ P++AP       E TYT
Sbjct  61   KKTTVTSQQRRAAAK----SSRSKSYILVSTLPPEYRVPAIIWPSKAPSFVLDQDEATYT  116

Query  178  GLYSFIIAVILLNGGSLPEQKLERYLKRTNADTYTPVD------RTDRFLQRLCKEGYLI  231
            G+ + I+++ILL+GGS+ EQ+L RYL+R   DT    +       TD  L+RL K+GYL+
Sbjct  117  GILTVILSLILLSGGSISEQELLRYLRRLGIDTDGTKEIPPLNGNTDDLLKRLVKQGYLV  176

Query  232  RNREMEGGEEIIE--YMVGPRGKVEVGVR  258
            R +E    +      Y VGPR KVE G  
Sbjct  177  RTKEGASDDGEEIIEYRVGPRAKVEFGPE  205



Lambda      K        H        a         alpha
   0.313    0.133    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00006988

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426270 pfam01454, MAGE, MAGE family. The MAGE (melanoma antig...  233     6e-77


>CDD:426270 pfam01454, MAGE, MAGE family.  The MAGE (melanoma antigen-encoding 
gene) family are expressed in a wide variety of tumors 
but not in normal cells, with the exception of the male germ 
cells, placenta, and, possibly, cells of the developing embryo. 
The cellular function of this family is unknown. This 
family also contains the yeast protein, Nse3. The Nse3 protein 
is part of the Smc5-6 complex. Nse3 has been demonstrated 
to be important for meiosis.
Length=205

 Score = 233 bits (596),  Expect = 6e-77, Method: Composition-based stats.
 Identities = 107/209 (51%), Positives = 130/209 (62%), Gaps = 22/209 (11%)

Query  68   LVRLALASELSRQPIRRTDISTKVLGEQGSRQFKIVFEMAQKTLRETFGMQLAELPVKEK  127
            LVR ALA E  R PIRR DIS KVLGE   R FK VFE AQK LR+ FGM+L ELP KE+
Sbjct  1    LVRYALACEYQRTPIRREDISKKVLGENRKRLFKKVFEEAQKILRDVFGMELVELPAKEE  60

Query  128  ----VTIQQRRAAQKVDRPSSTNKSWILTSTLPLAYRKPEILPPTRAP------LEGTYT  177
                VT QQRRAA K    SS +KS+IL STLP  YR P I+ P++AP       E TYT
Sbjct  61   KKTTVTSQQRRAAAK----SSRSKSYILVSTLPPEYRVPAIIWPSKAPSFVLDQDEATYT  116

Query  178  GLYSFIIAVILLNGGSLPEQKLERYLKRTNADTYTPVD------RTDRFLQRLCKEGYLI  231
            G+ + I+++ILL+GGS+ EQ+L RYL+R   DT    +       TD  L+RL K+GYL+
Sbjct  117  GILTVILSLILLSGGSISEQELLRYLRRLGIDTDGTKEIPPLNGNTDDLLKRLVKQGYLV  176

Query  232  RNREMEGGEEIIE--YMVGPRGKVEVGVR  258
            R +E    +      Y VGPR KVE G  
Sbjct  177  RTKEGASDDGEEIIEYRVGPRAKVEFGPE  205



Lambda      K        H        a         alpha
   0.313    0.133    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00006989

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426270 pfam01454, MAGE, MAGE family. The MAGE (melanoma antig...  233     6e-77


>CDD:426270 pfam01454, MAGE, MAGE family.  The MAGE (melanoma antigen-encoding 
gene) family are expressed in a wide variety of tumors 
but not in normal cells, with the exception of the male germ 
cells, placenta, and, possibly, cells of the developing embryo. 
The cellular function of this family is unknown. This 
family also contains the yeast protein, Nse3. The Nse3 protein 
is part of the Smc5-6 complex. Nse3 has been demonstrated 
to be important for meiosis.
Length=205

 Score = 233 bits (596),  Expect = 6e-77, Method: Composition-based stats.
 Identities = 107/209 (51%), Positives = 130/209 (62%), Gaps = 22/209 (11%)

Query  68   LVRLALASELSRQPIRRTDISTKVLGEQGSRQFKIVFEMAQKTLRETFGMQLAELPVKEK  127
            LVR ALA E  R PIRR DIS KVLGE   R FK VFE AQK LR+ FGM+L ELP KE+
Sbjct  1    LVRYALACEYQRTPIRREDISKKVLGENRKRLFKKVFEEAQKILRDVFGMELVELPAKEE  60

Query  128  ----VTIQQRRAAQKVDRPSSTNKSWILTSTLPLAYRKPEILPPTRAP------LEGTYT  177
                VT QQRRAA K    SS +KS+IL STLP  YR P I+ P++AP       E TYT
Sbjct  61   KKTTVTSQQRRAAAK----SSRSKSYILVSTLPPEYRVPAIIWPSKAPSFVLDQDEATYT  116

Query  178  GLYSFIIAVILLNGGSLPEQKLERYLKRTNADTYTPVD------RTDRFLQRLCKEGYLI  231
            G+ + I+++ILL+GGS+ EQ+L RYL+R   DT    +       TD  L+RL K+GYL+
Sbjct  117  GILTVILSLILLSGGSISEQELLRYLRRLGIDTDGTKEIPPLNGNTDDLLKRLVKQGYLV  176

Query  232  RNREMEGGEEIIE--YMVGPRGKVEVGVR  258
            R +E    +      Y VGPR KVE G  
Sbjct  177  RTKEGASDDGEEIIEYRVGPRAKVEFGPE  205



Lambda      K        H        a         alpha
   0.313    0.133    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00001139

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426270 pfam01454, MAGE, MAGE family. The MAGE (melanoma antig...  233     6e-77


>CDD:426270 pfam01454, MAGE, MAGE family.  The MAGE (melanoma antigen-encoding 
gene) family are expressed in a wide variety of tumors 
but not in normal cells, with the exception of the male germ 
cells, placenta, and, possibly, cells of the developing embryo. 
The cellular function of this family is unknown. This 
family also contains the yeast protein, Nse3. The Nse3 protein 
is part of the Smc5-6 complex. Nse3 has been demonstrated 
to be important for meiosis.
Length=205

 Score = 233 bits (596),  Expect = 6e-77, Method: Composition-based stats.
 Identities = 107/209 (51%), Positives = 130/209 (62%), Gaps = 22/209 (11%)

Query  68   LVRLALASELSRQPIRRTDISTKVLGEQGSRQFKIVFEMAQKTLRETFGMQLAELPVKEK  127
            LVR ALA E  R PIRR DIS KVLGE   R FK VFE AQK LR+ FGM+L ELP KE+
Sbjct  1    LVRYALACEYQRTPIRREDISKKVLGENRKRLFKKVFEEAQKILRDVFGMELVELPAKEE  60

Query  128  ----VTIQQRRAAQKVDRPSSTNKSWILTSTLPLAYRKPEILPPTRAP------LEGTYT  177
                VT QQRRAA K    SS +KS+IL STLP  YR P I+ P++AP       E TYT
Sbjct  61   KKTTVTSQQRRAAAK----SSRSKSYILVSTLPPEYRVPAIIWPSKAPSFVLDQDEATYT  116

Query  178  GLYSFIIAVILLNGGSLPEQKLERYLKRTNADTYTPVD------RTDRFLQRLCKEGYLI  231
            G+ + I+++ILL+GGS+ EQ+L RYL+R   DT    +       TD  L+RL K+GYL+
Sbjct  117  GILTVILSLILLSGGSISEQELLRYLRRLGIDTDGTKEIPPLNGNTDDLLKRLVKQGYLV  176

Query  232  RNREMEGGEEIIE--YMVGPRGKVEVGVR  258
            R +E    +      Y VGPR KVE G  
Sbjct  177  RTKEGASDDGEEIIEYRVGPRAKVEFGPE  205



Lambda      K        H        a         alpha
   0.313    0.133    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00006990

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.124    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00001140

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.136    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00001141

Length=116
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426046 pfam01096, TFIIS_C, Transcription factor S-II (TFIIS)      63.4    1e-15


>CDD:426046 pfam01096, TFIIS_C, Transcription factor S-II (TFIIS).  
Length=39

 Score = 63.4 bits (155),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 27/41 (66%), Gaps = 2/41 (5%)

Query  74   TQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTTCGARWR  114
             +CP   C    AYFFQLQ RSADEPMT F  CT CG RWR
Sbjct  1    AKCPK--CGNREAYFFQLQTRSADEPMTVFYVCTKCGHRWR  39



Lambda      K        H        a         alpha
   0.321    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0736    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00006991

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00001142

Length=116
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426046 pfam01096, TFIIS_C, Transcription factor S-II (TFIIS)      63.4    1e-15


>CDD:426046 pfam01096, TFIIS_C, Transcription factor S-II (TFIIS).  
Length=39

 Score = 63.4 bits (155),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 27/41 (66%), Gaps = 2/41 (5%)

Query  74   TQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTTCGARWR  114
             +CP   C    AYFFQLQ RSADEPMT F  CT CG RWR
Sbjct  1    AKCPK--CGNREAYFFQLQTRSADEPMTVFYVCTKCGHRWR  39



Lambda      K        H        a         alpha
   0.321    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00001143

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.142    0.522    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00001144

Length=66
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426046 pfam01096, TFIIS_C, Transcription factor S-II (TFIIS)      64.2    9e-17


>CDD:426046 pfam01096, TFIIS_C, Transcription factor S-II (TFIIS).  
Length=39

 Score = 64.2 bits (157),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 27/41 (66%), Gaps = 2/41 (5%)

Query  24  TQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTTCGARWR  64
            +CP   C    AYFFQLQ RSADEPMT F  CT CG RWR
Sbjct  1   AKCPK--CGNREAYFFQLQTRSADEPMTVFYVCTKCGHRWR  39



Lambda      K        H        a         alpha
   0.319    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00006992

Length=66
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426046 pfam01096, TFIIS_C, Transcription factor S-II (TFIIS)      64.2    9e-17


>CDD:426046 pfam01096, TFIIS_C, Transcription factor S-II (TFIIS).  
Length=39

 Score = 64.2 bits (157),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 27/41 (66%), Gaps = 2/41 (5%)

Query  24  TQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTTCGARWR  64
            +CP   C    AYFFQLQ RSADEPMT F  CT CG RWR
Sbjct  1   AKCPK--CGNREAYFFQLQTRSADEPMTVFYVCTKCGHRWR  39



Lambda      K        H        a         alpha
   0.319    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00001145

Length=458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  233     5e-76
CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-termina...  129     7e-37
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  69.2    2e-15


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 233 bits (598),  Expect = 5e-76, Method: Composition-based stats.
 Identities = 81/198 (41%), Positives = 105/198 (53%), Gaps = 23/198 (12%)

Query  6    KTHINIVVIGHVDSGKSTTTGHMIYKCGGIDQRTIEKFEKEAAELGKGSFKYAWVLDKLK  65
            K H NI +IGHVD GK+T T  ++Y  G I +R   K E EA             LD L 
Sbjct  1    KRHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEA------------GLDNLP  48

Query  66   SERERGITIDIALWKFQTPKYEVTVIDAPGHRDFIKNMITGTSQADCAILIIASGTGEFE  125
             ERERGITI  A   F+T  Y + +ID PGH DF+K +I G +QAD AIL++ +  G   
Sbjct  49   EERERGITIKSAAVSFETKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVEG---  105

Query  126  AGISKDGQTREHALLAFTLGVKQLIVALNKMDTCKWSEDRYNEIVKETSN-FIKKVGYNP  184
                   QTREH  LA  LGV  +IV +NKMD          E+V+E S   ++K G + 
Sbjct  106  ----VMPQTREHLRLARQLGVP-IIVFINKMDRV--DGAELEEVVEEVSRELLEKYGEDG  158

Query  185  KAVPFVPISGFNGDNMLE  202
            + VP VP S   G+ +  
Sbjct  159  EFVPVVPGSALKGEGVQT  176


>CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain. 
 Elongation factor Tu consists of three structural domains, 
this is the third domain. This domain adopts a beta barrel 
structure. This the third domain is involved in binding to 
both charged tRNA and binding to EF-Ts pfam00889.
Length=105

 Score = 129 bits (326),  Expect = 7e-37, Method: Composition-based stats.
 Identities = 41/114 (36%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query  332  PPQGAASFNAQVIVLNH-----PGQVGAGYAPVLDCHTAHIACKFSELLEKIDRRTGKSV  386
            P +    F AQV +LN            GY P     TA +  KF ELL K+D   G   
Sbjct  1    PIKPHTKFEAQVYILNKEEGGRHTPFFNGYRPQFYFRTADVTGKFVELLHKLD--PGGVS  58

Query  387  ENNPKFIKSGDAAIVKMVPSKPMCVESFTDYPPLGRFAVRDMRQTVAVGVVKSV  440
            E NP+F+  GD  IV +   KP+ +E         RFA+R+  +TVA GVV  +
Sbjct  59   E-NPEFVMPGDNVIVTVELIKPIALEKGQ------RFAIREGGRTVAAGVVTEI  105


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 69.2 bits (170),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query  259  GTVPVGRVETGIIKPGMVVTFAPANV-----TTEVKSVEMHHQQLQEGVPGDNVGFNVKN  313
            GTV  GRVE+G +K G  V   P         T V S+ M H  L+E V GDN G  +  
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAG  60

Query  314  VSVKEVRRGNV  324
            V ++++R G+ 
Sbjct  61   VGLEDIRVGDT  71



Lambda      K        H        a         alpha
   0.316    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 564403072


Query= TCONS_00001146

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  235     4e-76
CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-termina...  130     3e-37
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  70.0    1e-15


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 235 bits (602),  Expect = 4e-76, Method: Composition-based stats.
 Identities = 81/198 (41%), Positives = 105/198 (53%), Gaps = 23/198 (12%)

Query  40   KTHINIVVIGHVDSGKSTTTGHMIYKCGGIDQRTIEKFEKEAAELGKGSFKYAWVLDKLK  99
            K H NI +IGHVD GK+T T  ++Y  G I +R   K E EA             LD L 
Sbjct  1    KRHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEA------------GLDNLP  48

Query  100  SERERGITIDIALWKFQTPKYEVTVIDAPGHRDFIKNMITGTSQADCAILIIASGTGEFE  159
             ERERGITI  A   F+T  Y + +ID PGH DF+K +I G +QAD AIL++ +  G   
Sbjct  49   EERERGITIKSAAVSFETKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVEG---  105

Query  160  AGISKDGQTREHALLAFTLGVKQLIVALNKMDTCKWSEDRYNEIVKETSN-FIKKVGYNP  218
                   QTREH  LA  LGV  +IV +NKMD          E+V+E S   ++K G + 
Sbjct  106  ----VMPQTREHLRLARQLGVP-IIVFINKMDRV--DGAELEEVVEEVSRELLEKYGEDG  158

Query  219  KAVPFVPISGFNGDNMLE  236
            + VP VP S   G+ +  
Sbjct  159  EFVPVVPGSALKGEGVQT  176


>CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain. 
 Elongation factor Tu consists of three structural domains, 
this is the third domain. This domain adopts a beta barrel 
structure. This the third domain is involved in binding to 
both charged tRNA and binding to EF-Ts pfam00889.
Length=105

 Score = 130 bits (329),  Expect = 3e-37, Method: Composition-based stats.
 Identities = 41/114 (36%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query  366  PPQGAASFNAQVIVLNH-----PGQVGAGYAPVLDCHTAHIACKFSELLEKIDRRTGKSV  420
            P +    F AQV +LN            GY P     TA +  KF ELL K+D   G   
Sbjct  1    PIKPHTKFEAQVYILNKEEGGRHTPFFNGYRPQFYFRTADVTGKFVELLHKLD--PGGVS  58

Query  421  ENNPKFIKSGDAAIVKMVPSKPMCVESFTDYPPLGRFAVRDMRQTVAVGVVKSV  474
            E NP+F+  GD  IV +   KP+ +E         RFA+R+  +TVA GVV  +
Sbjct  59   E-NPEFVMPGDNVIVTVELIKPIALEKGQ------RFAIREGGRTVAAGVVTEI  105


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 70.0 bits (172),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query  293  GTVPVGRVETGIIKPGMVVTFAPANV-----TTEVKSVEMHHQQLQEGVPGDNVGFNVKN  347
            GTV  GRVE+G +K G  V   P         T V S+ M H  L+E V GDN G  +  
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAG  60

Query  348  VSVKEVRRGNV  358
            V ++++R G+ 
Sbjct  61   VGLEDIRVGDT  71



Lambda      K        H        a         alpha
   0.315    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00001147

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  235     4e-76
CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-termina...  130     3e-37
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  70.0    1e-15


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 235 bits (602),  Expect = 4e-76, Method: Composition-based stats.
 Identities = 81/198 (41%), Positives = 105/198 (53%), Gaps = 23/198 (12%)

Query  40   KTHINIVVIGHVDSGKSTTTGHMIYKCGGIDQRTIEKFEKEAAELGKGSFKYAWVLDKLK  99
            K H NI +IGHVD GK+T T  ++Y  G I +R   K E EA             LD L 
Sbjct  1    KRHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEA------------GLDNLP  48

Query  100  SERERGITIDIALWKFQTPKYEVTVIDAPGHRDFIKNMITGTSQADCAILIIASGTGEFE  159
             ERERGITI  A   F+T  Y + +ID PGH DF+K +I G +QAD AIL++ +  G   
Sbjct  49   EERERGITIKSAAVSFETKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVEG---  105

Query  160  AGISKDGQTREHALLAFTLGVKQLIVALNKMDTCKWSEDRYNEIVKETSN-FIKKVGYNP  218
                   QTREH  LA  LGV  +IV +NKMD          E+V+E S   ++K G + 
Sbjct  106  ----VMPQTREHLRLARQLGVP-IIVFINKMDRV--DGAELEEVVEEVSRELLEKYGEDG  158

Query  219  KAVPFVPISGFNGDNMLE  236
            + VP VP S   G+ +  
Sbjct  159  EFVPVVPGSALKGEGVQT  176


>CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain. 
 Elongation factor Tu consists of three structural domains, 
this is the third domain. This domain adopts a beta barrel 
structure. This the third domain is involved in binding to 
both charged tRNA and binding to EF-Ts pfam00889.
Length=105

 Score = 130 bits (329),  Expect = 3e-37, Method: Composition-based stats.
 Identities = 41/114 (36%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query  366  PPQGAASFNAQVIVLNH-----PGQVGAGYAPVLDCHTAHIACKFSELLEKIDRRTGKSV  420
            P +    F AQV +LN            GY P     TA +  KF ELL K+D   G   
Sbjct  1    PIKPHTKFEAQVYILNKEEGGRHTPFFNGYRPQFYFRTADVTGKFVELLHKLD--PGGVS  58

Query  421  ENNPKFIKSGDAAIVKMVPSKPMCVESFTDYPPLGRFAVRDMRQTVAVGVVKSV  474
            E NP+F+  GD  IV +   KP+ +E         RFA+R+  +TVA GVV  +
Sbjct  59   E-NPEFVMPGDNVIVTVELIKPIALEKGQ------RFAIREGGRTVAAGVVTEI  105


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 70.0 bits (172),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query  293  GTVPVGRVETGIIKPGMVVTFAPANV-----TTEVKSVEMHHQQLQEGVPGDNVGFNVKN  347
            GTV  GRVE+G +K G  V   P         T V S+ M H  L+E V GDN G  +  
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAG  60

Query  348  VSVKEVRRGNV  358
            V ++++R G+ 
Sbjct  61   VGLEDIRVGDT  71



Lambda      K        H        a         alpha
   0.315    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00006994

Length=458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  233     5e-76
CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-termina...  129     7e-37
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  69.2    2e-15


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 233 bits (598),  Expect = 5e-76, Method: Composition-based stats.
 Identities = 81/198 (41%), Positives = 105/198 (53%), Gaps = 23/198 (12%)

Query  6    KTHINIVVIGHVDSGKSTTTGHMIYKCGGIDQRTIEKFEKEAAELGKGSFKYAWVLDKLK  65
            K H NI +IGHVD GK+T T  ++Y  G I +R   K E EA             LD L 
Sbjct  1    KRHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEA------------GLDNLP  48

Query  66   SERERGITIDIALWKFQTPKYEVTVIDAPGHRDFIKNMITGTSQADCAILIIASGTGEFE  125
             ERERGITI  A   F+T  Y + +ID PGH DF+K +I G +QAD AIL++ +  G   
Sbjct  49   EERERGITIKSAAVSFETKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVEG---  105

Query  126  AGISKDGQTREHALLAFTLGVKQLIVALNKMDTCKWSEDRYNEIVKETSN-FIKKVGYNP  184
                   QTREH  LA  LGV  +IV +NKMD          E+V+E S   ++K G + 
Sbjct  106  ----VMPQTREHLRLARQLGVP-IIVFINKMDRV--DGAELEEVVEEVSRELLEKYGEDG  158

Query  185  KAVPFVPISGFNGDNMLE  202
            + VP VP S   G+ +  
Sbjct  159  EFVPVVPGSALKGEGVQT  176


>CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain. 
 Elongation factor Tu consists of three structural domains, 
this is the third domain. This domain adopts a beta barrel 
structure. This the third domain is involved in binding to 
both charged tRNA and binding to EF-Ts pfam00889.
Length=105

 Score = 129 bits (326),  Expect = 7e-37, Method: Composition-based stats.
 Identities = 41/114 (36%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query  332  PPQGAASFNAQVIVLNH-----PGQVGAGYAPVLDCHTAHIACKFSELLEKIDRRTGKSV  386
            P +    F AQV +LN            GY P     TA +  KF ELL K+D   G   
Sbjct  1    PIKPHTKFEAQVYILNKEEGGRHTPFFNGYRPQFYFRTADVTGKFVELLHKLD--PGGVS  58

Query  387  ENNPKFIKSGDAAIVKMVPSKPMCVESFTDYPPLGRFAVRDMRQTVAVGVVKSV  440
            E NP+F+  GD  IV +   KP+ +E         RFA+R+  +TVA GVV  +
Sbjct  59   E-NPEFVMPGDNVIVTVELIKPIALEKGQ------RFAIREGGRTVAAGVVTEI  105


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 69.2 bits (170),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query  259  GTVPVGRVETGIIKPGMVVTFAPANV-----TTEVKSVEMHHQQLQEGVPGDNVGFNVKN  313
            GTV  GRVE+G +K G  V   P         T V S+ M H  L+E V GDN G  +  
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAG  60

Query  314  VSVKEVRRGNV  324
            V ++++R G+ 
Sbjct  61   VGLEDIRVGDT  71



Lambda      K        H        a         alpha
   0.316    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 564403072


Query= TCONS_00001148

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  233     7e-76
CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-termina...  128     8e-37
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  68.8    2e-15


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 233 bits (598),  Expect = 7e-76, Method: Composition-based stats.
 Identities = 81/198 (41%), Positives = 105/198 (53%), Gaps = 23/198 (12%)

Query  6    KTHINIVVIGHVDSGKSTTTGHMIYKCGGIDQRTIEKFEKEAAELGKGSFKYAWVLDKLK  65
            K H NI +IGHVD GK+T T  ++Y  G I +R   K E EA             LD L 
Sbjct  1    KRHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEA------------GLDNLP  48

Query  66   SERERGITIDIALWKFQTPKYEVTVIDAPGHRDFIKNMITGTSQADCAILIIASGTGEFE  125
             ERERGITI  A   F+T  Y + +ID PGH DF+K +I G +QAD AIL++ +  G   
Sbjct  49   EERERGITIKSAAVSFETKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVEG---  105

Query  126  AGISKDGQTREHALLAFTLGVKQLIVALNKMDTCKWSEDRYNEIVKETSN-FIKKVGYNP  184
                   QTREH  LA  LGV  +IV +NKMD          E+V+E S   ++K G + 
Sbjct  106  ----VMPQTREHLRLARQLGVP-IIVFINKMDRV--DGAELEEVVEEVSRELLEKYGEDG  158

Query  185  KAVPFVPISGFNGDNMLE  202
            + VP VP S   G+ +  
Sbjct  159  EFVPVVPGSALKGEGVQT  176


>CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain. 
 Elongation factor Tu consists of three structural domains, 
this is the third domain. This domain adopts a beta barrel 
structure. This the third domain is involved in binding to 
both charged tRNA and binding to EF-Ts pfam00889.
Length=105

 Score = 128 bits (325),  Expect = 8e-37, Method: Composition-based stats.
 Identities = 41/114 (36%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query  332  PPQGAASFNAQVIVLNH-----PGQVGAGYAPVLDCHTAHIACKFSELLEKIDRRTGKSV  386
            P +    F AQV +LN            GY P     TA +  KF ELL K+D   G   
Sbjct  1    PIKPHTKFEAQVYILNKEEGGRHTPFFNGYRPQFYFRTADVTGKFVELLHKLD--PGGVS  58

Query  387  ENNPKFIKSGDAAIVKMVPSKPMCVESFTDYPPLGRFAVRDMRQTVAVGVVKSV  440
            E NP+F+  GD  IV +   KP+ +E         RFA+R+  +TVA GVV  +
Sbjct  59   E-NPEFVMPGDNVIVTVELIKPIALEKGQ------RFAIREGGRTVAAGVVTEI  105


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 68.8 bits (169),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query  259  GTVPVGRVETGIIKPGMVVTFAPANV-----TTEVKSVEMHHQQLQEGVPGDNVGFNVKN  313
            GTV  GRVE+G +K G  V   P         T V S+ M H  L+E V GDN G  +  
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAG  60

Query  314  VSVKEVRRGNV  324
            V ++++R G+ 
Sbjct  61   VGLEDIRVGDT  71



Lambda      K        H        a         alpha
   0.315    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00001149

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  236     2e-76
CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-termina...  121     7e-34
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  70.8    5e-16


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 236 bits (604),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 81/198 (41%), Positives = 105/198 (53%), Gaps = 23/198 (12%)

Query  6    KTHINIVVIGHVDSGKSTTTGHMIYKCGGIDQRTIEKFEKEAAELGKGSFKYAWVLDKLK  65
            K H NI +IGHVD GK+T T  ++Y  G I +R   K E EA             LD L 
Sbjct  1    KRHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEA------------GLDNLP  48

Query  66   SERERGITIDIALWKFQTPKYEVTVIDAPGHRDFIKNMITGTSQADCAILIIASGTGEFE  125
             ERERGITI  A   F+T  Y + +ID PGH DF+K +I G +QAD AIL++ +  G   
Sbjct  49   EERERGITIKSAAVSFETKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVEG---  105

Query  126  AGISKDGQTREHALLAFTLGVKQLIVALNKMDTCKWSEDRYNEIVKETSN-FIKKVGYNP  184
                   QTREH  LA  LGV  +IV +NKMD          E+V+E S   ++K G + 
Sbjct  106  ----VMPQTREHLRLARQLGVP-IIVFINKMDRV--DGAELEEVVEEVSRELLEKYGEDG  158

Query  185  KAVPFVPISGFNGDNMLE  202
            + VP VP S   G+ +  
Sbjct  159  EFVPVVPGSALKGEGVQT  176


>CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain. 
 Elongation factor Tu consists of three structural domains, 
this is the third domain. This domain adopts a beta barrel 
structure. This the third domain is involved in binding to 
both charged tRNA and binding to EF-Ts pfam00889.
Length=105

 Score = 121 bits (306),  Expect = 7e-34, Method: Composition-based stats.
 Identities = 38/108 (35%), Positives = 50/108 (46%), Gaps = 14/108 (13%)

Query  332  PPQGAASFNAQVIVLNH-----PGQVGAGYAPVLDCHTAHIACKFSELLEKIDRRTGKSV  386
            P +    F AQV +LN            GY P     TA +  KF ELL K+D   G   
Sbjct  1    PIKPHTKFEAQVYILNKEEGGRHTPFFNGYRPQFYFRTADVTGKFVELLHKLD--PGGVS  58

Query  387  ENNPKFIKSGDAAIVKMVPSKPMCVESFTDYPPLGRFAVRDMRQTVAV  434
            E NP+F+  GD  IV +   KP+ +E         RFA+R+  +TVA 
Sbjct  59   E-NPEFVMPGDNVIVTVELIKPIALEKGQ------RFAIREGGRTVAA  99


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 70.8 bits (174),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query  259  GTVPVGRVETGIIKPGMVVTFAPANV-----TTEVKSVEMHHQQLQEGVPGDNVGFNVKN  313
            GTV  GRVE+G +K G  V   P         T V S+ M H  L+E V GDN G  +  
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAG  60

Query  314  VSVKEVRRGNV  324
            V ++++R G+ 
Sbjct  61   VGLEDIRVGDT  71



Lambda      K        H        a         alpha
   0.316    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595027938


Query= TCONS_00001150

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00001151

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  202     6e-64
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            93.3    3e-22


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 202 bits (516),  Expect = 6e-64, Method: Composition-based stats.
 Identities = 81/264 (31%), Positives = 126/264 (48%), Gaps = 49/264 (19%)

Query  16   FQILKLIGKGTFGQVYQVMKKDTHRIYAMKVLSKKVIIQKKEVAHTLGERNILVRTAMAA  75
            +++L+ +G G+FG VY+   +DT +I A+K + K+ I +KK+  + L E  IL       
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKD-KNILREIKIL---KKLN  56

Query  76   SPFIVGLKFSFQTPTDLYLVTDYMSGGELFWHLQKEGRFQEARAKFYIAELILALQHLHD  135
             P IV L  +F+   +LYLV +Y+ GG LF  L ++G F E  AKF + +++  L     
Sbjct  57   HPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL-----  111

Query  136  HDIVYRDLKPENILLDANGHIALCDFGLSKANLTQNDTTNTFCGTTEYLAPEVLLDEQGY  195
                             +G                  +  TF GT  Y+APEV L    Y
Sbjct  112  ----------------ESGS-----------------SLTTFVGTPWYMAPEV-LGGNPY  137

Query  196  TKMVDFWSLGVLVFEMCCGWSPFYAEDTQQMYKNIAFGKVRFPR--DALSTEGRNFVKGL  253
               VD WSLG +++E+  G  PF   +  ++Y+ I      FP     LS E ++ +K L
Sbjct  138  GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKL  197

Query  254  LNRNPKHRLGAKGDAKELMAHPFF  277
            L ++P  RL     A + + HP+F
Sbjct  198  LKKDPSKRLT----ATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 93.3 bits (233),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 61/229 (27%), Positives = 103/229 (45%), Gaps = 26/229 (11%)

Query  16   FQILKLIGKGTFGQVYQ----VMKKDTHRIYAMKVLSKKVIIQKKEVAHTLGERNILVRT  71
              + + +G+G FG+VY+       ++T    A+K L +              ER   +  
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEG---------ADEEEREDFLEE  51

Query  72   AMAAS----PFIVGLK-FSFQTPTDLYLVTDYMSGGELFWHLQKEGRFQEARAKFYIA-E  125
            A        P IV L     Q    LY+VT+YM GG+L   L+K  R    +    +A +
Sbjct  52   ASIMKKLDHPNIVKLLGVCTQGEP-LYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQ  110

Query  126  LILALQHLHDHDIVYRDLKPENILLDANGHIALCDFGLSKANLTQNDTTNTFCGTTE---  182
            +   +++L   + V+RDL   N L+  N  + + DFGLS+  +  +D      G      
Sbjct  111  IAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRD-IYDDDYYRKRGGGKLPIK  169

Query  183  YLAPEVLLDEQGYTKMVDFWSLGVLVFEMCC-GWSPFYAEDTQQMYKNI  230
            ++APE L D   +T   D WS GVL++E+   G  P+     +++ + +
Sbjct  170  WMAPESLKD-GKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFL  217



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00001155

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  202     6e-64
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            93.3    3e-22


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 202 bits (516),  Expect = 6e-64, Method: Composition-based stats.
 Identities = 81/264 (31%), Positives = 126/264 (48%), Gaps = 49/264 (19%)

Query  16   FQILKLIGKGTFGQVYQVMKKDTHRIYAMKVLSKKVIIQKKEVAHTLGERNILVRTAMAA  75
            +++L+ +G G+FG VY+   +DT +I A+K + K+ I +KK+  + L E  IL       
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKD-KNILREIKIL---KKLN  56

Query  76   SPFIVGLKFSFQTPTDLYLVTDYMSGGELFWHLQKEGRFQEARAKFYIAELILALQHLHD  135
             P IV L  +F+   +LYLV +Y+ GG LF  L ++G F E  AKF + +++  L     
Sbjct  57   HPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL-----  111

Query  136  HDIVYRDLKPENILLDANGHIALCDFGLSKANLTQNDTTNTFCGTTEYLAPEVLLDEQGY  195
                             +G                  +  TF GT  Y+APEV L    Y
Sbjct  112  ----------------ESGS-----------------SLTTFVGTPWYMAPEV-LGGNPY  137

Query  196  TKMVDFWSLGVLVFEMCCGWSPFYAEDTQQMYKNIAFGKVRFPR--DALSTEGRNFVKGL  253
               VD WSLG +++E+  G  PF   +  ++Y+ I      FP     LS E ++ +K L
Sbjct  138  GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKL  197

Query  254  LNRNPKHRLGAKGDAKELMAHPFF  277
            L ++P  RL     A + + HP+F
Sbjct  198  LKKDPSKRLT----ATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 93.3 bits (233),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 61/229 (27%), Positives = 103/229 (45%), Gaps = 26/229 (11%)

Query  16   FQILKLIGKGTFGQVYQ----VMKKDTHRIYAMKVLSKKVIIQKKEVAHTLGERNILVRT  71
              + + +G+G FG+VY+       ++T    A+K L +              ER   +  
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEG---------ADEEEREDFLEE  51

Query  72   AMAAS----PFIVGLK-FSFQTPTDLYLVTDYMSGGELFWHLQKEGRFQEARAKFYIA-E  125
            A        P IV L     Q    LY+VT+YM GG+L   L+K  R    +    +A +
Sbjct  52   ASIMKKLDHPNIVKLLGVCTQGEP-LYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQ  110

Query  126  LILALQHLHDHDIVYRDLKPENILLDANGHIALCDFGLSKANLTQNDTTNTFCGTTE---  182
            +   +++L   + V+RDL   N L+  N  + + DFGLS+  +  +D      G      
Sbjct  111  IAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRD-IYDDDYYRKRGGGKLPIK  169

Query  183  YLAPEVLLDEQGYTKMVDFWSLGVLVFEMCC-GWSPFYAEDTQQMYKNI  230
            ++APE L D   +T   D WS GVL++E+   G  P+     +++ + +
Sbjct  170  WMAPESLKD-GKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFL  217



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00001152

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  202     6e-64
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            93.3    3e-22


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 202 bits (516),  Expect = 6e-64, Method: Composition-based stats.
 Identities = 81/264 (31%), Positives = 126/264 (48%), Gaps = 49/264 (19%)

Query  16   FQILKLIGKGTFGQVYQVMKKDTHRIYAMKVLSKKVIIQKKEVAHTLGERNILVRTAMAA  75
            +++L+ +G G+FG VY+   +DT +I A+K + K+ I +KK+  + L E  IL       
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKD-KNILREIKIL---KKLN  56

Query  76   SPFIVGLKFSFQTPTDLYLVTDYMSGGELFWHLQKEGRFQEARAKFYIAELILALQHLHD  135
             P IV L  +F+   +LYLV +Y+ GG LF  L ++G F E  AKF + +++  L     
Sbjct  57   HPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL-----  111

Query  136  HDIVYRDLKPENILLDANGHIALCDFGLSKANLTQNDTTNTFCGTTEYLAPEVLLDEQGY  195
                             +G                  +  TF GT  Y+APEV L    Y
Sbjct  112  ----------------ESGS-----------------SLTTFVGTPWYMAPEV-LGGNPY  137

Query  196  TKMVDFWSLGVLVFEMCCGWSPFYAEDTQQMYKNIAFGKVRFPR--DALSTEGRNFVKGL  253
               VD WSLG +++E+  G  PF   +  ++Y+ I      FP     LS E ++ +K L
Sbjct  138  GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKL  197

Query  254  LNRNPKHRLGAKGDAKELMAHPFF  277
            L ++P  RL     A + + HP+F
Sbjct  198  LKKDPSKRLT----ATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 93.3 bits (233),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 61/229 (27%), Positives = 103/229 (45%), Gaps = 26/229 (11%)

Query  16   FQILKLIGKGTFGQVYQ----VMKKDTHRIYAMKVLSKKVIIQKKEVAHTLGERNILVRT  71
              + + +G+G FG+VY+       ++T    A+K L +              ER   +  
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEG---------ADEEEREDFLEE  51

Query  72   AMAAS----PFIVGLK-FSFQTPTDLYLVTDYMSGGELFWHLQKEGRFQEARAKFYIA-E  125
            A        P IV L     Q    LY+VT+YM GG+L   L+K  R    +    +A +
Sbjct  52   ASIMKKLDHPNIVKLLGVCTQGEP-LYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQ  110

Query  126  LILALQHLHDHDIVYRDLKPENILLDANGHIALCDFGLSKANLTQNDTTNTFCGTTE---  182
            +   +++L   + V+RDL   N L+  N  + + DFGLS+  +  +D      G      
Sbjct  111  IAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRD-IYDDDYYRKRGGGKLPIK  169

Query  183  YLAPEVLLDEQGYTKMVDFWSLGVLVFEMCC-GWSPFYAEDTQQMYKNI  230
            ++APE L D   +T   D WS GVL++E+   G  P+     +++ + +
Sbjct  170  WMAPESLKD-GKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFL  217



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00006995

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  202     6e-64
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            93.3    3e-22


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 202 bits (516),  Expect = 6e-64, Method: Composition-based stats.
 Identities = 81/264 (31%), Positives = 126/264 (48%), Gaps = 49/264 (19%)

Query  16   FQILKLIGKGTFGQVYQVMKKDTHRIYAMKVLSKKVIIQKKEVAHTLGERNILVRTAMAA  75
            +++L+ +G G+FG VY+   +DT +I A+K + K+ I +KK+  + L E  IL       
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKD-KNILREIKIL---KKLN  56

Query  76   SPFIVGLKFSFQTPTDLYLVTDYMSGGELFWHLQKEGRFQEARAKFYIAELILALQHLHD  135
             P IV L  +F+   +LYLV +Y+ GG LF  L ++G F E  AKF + +++  L     
Sbjct  57   HPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL-----  111

Query  136  HDIVYRDLKPENILLDANGHIALCDFGLSKANLTQNDTTNTFCGTTEYLAPEVLLDEQGY  195
                             +G                  +  TF GT  Y+APEV L    Y
Sbjct  112  ----------------ESGS-----------------SLTTFVGTPWYMAPEV-LGGNPY  137

Query  196  TKMVDFWSLGVLVFEMCCGWSPFYAEDTQQMYKNIAFGKVRFPR--DALSTEGRNFVKGL  253
               VD WSLG +++E+  G  PF   +  ++Y+ I      FP     LS E ++ +K L
Sbjct  138  GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKL  197

Query  254  LNRNPKHRLGAKGDAKELMAHPFF  277
            L ++P  RL     A + + HP+F
Sbjct  198  LKKDPSKRLT----ATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 93.3 bits (233),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 61/229 (27%), Positives = 103/229 (45%), Gaps = 26/229 (11%)

Query  16   FQILKLIGKGTFGQVYQ----VMKKDTHRIYAMKVLSKKVIIQKKEVAHTLGERNILVRT  71
              + + +G+G FG+VY+       ++T    A+K L +              ER   +  
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEG---------ADEEEREDFLEE  51

Query  72   AMAAS----PFIVGLK-FSFQTPTDLYLVTDYMSGGELFWHLQKEGRFQEARAKFYIA-E  125
            A        P IV L     Q    LY+VT+YM GG+L   L+K  R    +    +A +
Sbjct  52   ASIMKKLDHPNIVKLLGVCTQGEP-LYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQ  110

Query  126  LILALQHLHDHDIVYRDLKPENILLDANGHIALCDFGLSKANLTQNDTTNTFCGTTE---  182
            +   +++L   + V+RDL   N L+  N  + + DFGLS+  +  +D      G      
Sbjct  111  IAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRD-IYDDDYYRKRGGGKLPIK  169

Query  183  YLAPEVLLDEQGYTKMVDFWSLGVLVFEMCC-GWSPFYAEDTQQMYKNI  230
            ++APE L D   +T   D WS GVL++E+   G  P+     +++ + +
Sbjct  170  WMAPESLKD-GKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFL  217



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00001153

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  202     6e-64
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            93.3    3e-22


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 202 bits (516),  Expect = 6e-64, Method: Composition-based stats.
 Identities = 81/264 (31%), Positives = 126/264 (48%), Gaps = 49/264 (19%)

Query  16   FQILKLIGKGTFGQVYQVMKKDTHRIYAMKVLSKKVIIQKKEVAHTLGERNILVRTAMAA  75
            +++L+ +G G+FG VY+   +DT +I A+K + K+ I +KK+  + L E  IL       
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKD-KNILREIKIL---KKLN  56

Query  76   SPFIVGLKFSFQTPTDLYLVTDYMSGGELFWHLQKEGRFQEARAKFYIAELILALQHLHD  135
             P IV L  +F+   +LYLV +Y+ GG LF  L ++G F E  AKF + +++  L     
Sbjct  57   HPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL-----  111

Query  136  HDIVYRDLKPENILLDANGHIALCDFGLSKANLTQNDTTNTFCGTTEYLAPEVLLDEQGY  195
                             +G                  +  TF GT  Y+APEV L    Y
Sbjct  112  ----------------ESGS-----------------SLTTFVGTPWYMAPEV-LGGNPY  137

Query  196  TKMVDFWSLGVLVFEMCCGWSPFYAEDTQQMYKNIAFGKVRFPR--DALSTEGRNFVKGL  253
               VD WSLG +++E+  G  PF   +  ++Y+ I      FP     LS E ++ +K L
Sbjct  138  GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKL  197

Query  254  LNRNPKHRLGAKGDAKELMAHPFF  277
            L ++P  RL     A + + HP+F
Sbjct  198  LKKDPSKRLT----ATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 93.3 bits (233),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 61/229 (27%), Positives = 103/229 (45%), Gaps = 26/229 (11%)

Query  16   FQILKLIGKGTFGQVYQ----VMKKDTHRIYAMKVLSKKVIIQKKEVAHTLGERNILVRT  71
              + + +G+G FG+VY+       ++T    A+K L +              ER   +  
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEG---------ADEEEREDFLEE  51

Query  72   AMAAS----PFIVGLK-FSFQTPTDLYLVTDYMSGGELFWHLQKEGRFQEARAKFYIA-E  125
            A        P IV L     Q    LY+VT+YM GG+L   L+K  R    +    +A +
Sbjct  52   ASIMKKLDHPNIVKLLGVCTQGEP-LYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQ  110

Query  126  LILALQHLHDHDIVYRDLKPENILLDANGHIALCDFGLSKANLTQNDTTNTFCGTTE---  182
            +   +++L   + V+RDL   N L+  N  + + DFGLS+  +  +D      G      
Sbjct  111  IAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRD-IYDDDYYRKRGGGKLPIK  169

Query  183  YLAPEVLLDEQGYTKMVDFWSLGVLVFEMCC-GWSPFYAEDTQQMYKNI  230
            ++APE L D   +T   D WS GVL++E+   G  P+     +++ + +
Sbjct  170  WMAPESLKD-GKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFL  217



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00006996

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  202     6e-64
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            93.3    3e-22


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 202 bits (516),  Expect = 6e-64, Method: Composition-based stats.
 Identities = 81/264 (31%), Positives = 126/264 (48%), Gaps = 49/264 (19%)

Query  16   FQILKLIGKGTFGQVYQVMKKDTHRIYAMKVLSKKVIIQKKEVAHTLGERNILVRTAMAA  75
            +++L+ +G G+FG VY+   +DT +I A+K + K+ I +KK+  + L E  IL       
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKD-KNILREIKIL---KKLN  56

Query  76   SPFIVGLKFSFQTPTDLYLVTDYMSGGELFWHLQKEGRFQEARAKFYIAELILALQHLHD  135
             P IV L  +F+   +LYLV +Y+ GG LF  L ++G F E  AKF + +++  L     
Sbjct  57   HPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL-----  111

Query  136  HDIVYRDLKPENILLDANGHIALCDFGLSKANLTQNDTTNTFCGTTEYLAPEVLLDEQGY  195
                             +G                  +  TF GT  Y+APEV L    Y
Sbjct  112  ----------------ESGS-----------------SLTTFVGTPWYMAPEV-LGGNPY  137

Query  196  TKMVDFWSLGVLVFEMCCGWSPFYAEDTQQMYKNIAFGKVRFPR--DALSTEGRNFVKGL  253
               VD WSLG +++E+  G  PF   +  ++Y+ I      FP     LS E ++ +K L
Sbjct  138  GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKL  197

Query  254  LNRNPKHRLGAKGDAKELMAHPFF  277
            L ++P  RL     A + + HP+F
Sbjct  198  LKKDPSKRLT----ATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 93.3 bits (233),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 61/229 (27%), Positives = 103/229 (45%), Gaps = 26/229 (11%)

Query  16   FQILKLIGKGTFGQVYQ----VMKKDTHRIYAMKVLSKKVIIQKKEVAHTLGERNILVRT  71
              + + +G+G FG+VY+       ++T    A+K L +              ER   +  
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEG---------ADEEEREDFLEE  51

Query  72   AMAAS----PFIVGLK-FSFQTPTDLYLVTDYMSGGELFWHLQKEGRFQEARAKFYIA-E  125
            A        P IV L     Q    LY+VT+YM GG+L   L+K  R    +    +A +
Sbjct  52   ASIMKKLDHPNIVKLLGVCTQGEP-LYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQ  110

Query  126  LILALQHLHDHDIVYRDLKPENILLDANGHIALCDFGLSKANLTQNDTTNTFCGTTE---  182
            +   +++L   + V+RDL   N L+  N  + + DFGLS+  +  +D      G      
Sbjct  111  IAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRD-IYDDDYYRKRGGGKLPIK  169

Query  183  YLAPEVLLDEQGYTKMVDFWSLGVLVFEMCC-GWSPFYAEDTQQMYKNI  230
            ++APE L D   +T   D WS GVL++E+   G  P+     +++ + +
Sbjct  170  WMAPESLKD-GKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFL  217



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00001154

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430112 pfam08624, CRC_subunit, Chromatin remodelling complex ...  256     2e-86


>CDD:430112 pfam08624, CRC_subunit, Chromatin remodelling complex Rsc7/Swp82 
subunit.  This family has been identified as a subunit of 
chromatin remodelling complexes. Saccharomyces cerevisiae 
NPL6 and its paralogue SWP82 have been identified as subunits 
of the RSC chromatin remodelling complex, and SWI/SNF chromatin 
remodelling complex respectively.
Length=134

 Score = 256 bits (657),  Expect = 2e-86, Method: Composition-based stats.
 Identities = 87/133 (65%), Positives = 105/133 (79%), Gaps = 1/133 (1%)

Query  175  DDEVALPP-DPEGETKVDKNGVLKDGREYRVRTFTILNRGDRLYMLSTEPARCIGFRDSY  233
            +DE  LP  DPEGETK+DKNG L  GREY  RTFT+  RG+RLYMLST+ AR +GFRDSY
Sbjct  2    NDEYVLPKDDPEGETKIDKNGRLLGGREYLFRTFTLPGRGERLYMLSTDLARALGFRDSY  61

Query  234  LFFQKHKLLYKIIIDDEAKRDLIDREIIPHSYKGRAIGVVTARSVFREFGAKIIVGGRKI  293
            LFF+KH  LYK+I   E K DLI+R ++P SY+ R I +VTARSVFREFGA+IIVGG+++
Sbjct  62   LFFRKHPQLYKLIATQEEKDDLIERGLLPSSYRSRQITLVTARSVFREFGARIIVGGKRV  121

Query  294  IDDYNVQAARERG  306
            IDDY  Q ARE+G
Sbjct  122  IDDYWEQKAREQG  134



Lambda      K        H        a         alpha
   0.312    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00006997

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430112 pfam08624, CRC_subunit, Chromatin remodelling complex ...  256     3e-84


>CDD:430112 pfam08624, CRC_subunit, Chromatin remodelling complex Rsc7/Swp82 
subunit.  This family has been identified as a subunit of 
chromatin remodelling complexes. Saccharomyces cerevisiae 
NPL6 and its paralogue SWP82 have been identified as subunits 
of the RSC chromatin remodelling complex, and SWI/SNF chromatin 
remodelling complex respectively.
Length=134

 Score = 256 bits (657),  Expect = 3e-84, Method: Composition-based stats.
 Identities = 87/133 (65%), Positives = 105/133 (79%), Gaps = 1/133 (1%)

Query  175  DDEVALPP-DPEGETKVDKNGVLKDGREYRVRTFTILNRGDRLYMLSTEPARCIGFRDSY  233
            +DE  LP  DPEGETK+DKNG L  GREY  RTFT+  RG+RLYMLST+ AR +GFRDSY
Sbjct  2    NDEYVLPKDDPEGETKIDKNGRLLGGREYLFRTFTLPGRGERLYMLSTDLARALGFRDSY  61

Query  234  LFFQKHKLLYKIIIDDEAKRDLIDREIIPHSYKGRAIGVVTARSVFREFGAKIIVGGRKI  293
            LFF+KH  LYK+I   E K DLI+R ++P SY+ R I +VTARSVFREFGA+IIVGG+++
Sbjct  62   LFFRKHPQLYKLIATQEEKDDLIERGLLPSSYRSRQITLVTARSVFREFGARIIVGGKRV  121

Query  294  IDDYNVQAARERG  306
            IDDY  Q ARE+G
Sbjct  122  IDDYWEQKAREQG  134



Lambda      K        H        a         alpha
   0.312    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 720314296


Query= TCONS_00001156

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.121    0.312    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00001157

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00001158

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00001159

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00001160

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogen...  113     5e-29
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  78.9    3e-17
CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  60.7    7e-11


>CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase 
family.  The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene 
isomerase (3 beta-HSD) catalyzes the oxidation 
and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene 
steroid precursors into the corresponding 
4-ene-ketosteroids necessary for the formation of all classes 
of steroid hormones.
Length=279

 Score = 113 bits (285),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 125/314 (40%), Gaps = 56/314 (18%)

Query  72   IVVGGSGLVGNWIITHLLARGEDPTAIRVLDL---QSPRQQILDQGV-GFVKVDITDAEA  127
            +V GG G +G  II  L+  GE    +RV DL       +      V  +++ D+TD + 
Sbjct  1    VVTGGGGFLGRHIIKLLVREGELKE-VRVFDLRESPELLEDFSKSNVIKYIQGDVTDKDD  59

Query  128  VQAAFTQPWPQQATSLPLTVFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGA  187
            +  A       +   +   V H A+ +      K       +VNV GT+N+L A  K G 
Sbjct  60   LDNAL------EGVDV---VIHTASAV--DVFGKYTFDEIMKVNVKGTQNVLEACVKAGV  108

Query  188  SCFISTSSGSVLLRRPSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGN-YAVSKAEAE  246
               + TSS  V+              P    Q I +  E    ++    + Y  SKA AE
Sbjct  109  RVLVYTSSAEVV-------------GPNSYGQPILNGDEE-TPYESTHQDAYPRSKAIAE  154

Query  247  RIIRAA-DSLESN---FRTGCIRPANGIYGVGDTTI---------TGMYLIKGGVPSWTY  293
            +++  A      N     T  +RPA GIYG GD  +          G+   K G  +   
Sbjct  155  KLVLKANGRPLKNGGRLYTCALRPA-GIYGEGDRLLVPFIVNLAKLGLAKFKTGDDN---  210

Query  294  PVIQSFVNAENVSIAHLLYEQRLLDHTASPTKLPNIGGQAFTVTDPNPAIAFSDL-YLLM  352
              +   V   NV+ AH+L  + L D    P K+ +I G A+ + D  P  ++ D    L+
Sbjct  211  -NLSDRVYVGNVAWAHILAARALQD----PKKMSSIAGNAYFIYDDTPVQSYDDFNRTLL  265

Query  353  TTLAKTP--IRFPR  364
             +L      I  P 
Sbjct  266  KSLGYDLPSISLPL  279


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 78.9 bits (195),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 83/211 (39%), Gaps = 42/211 (20%)

Query  72   IVVGGSGLVGNWIITHLLARGEDPTAIRVLD-LQSPRQQILDQGVGFVKVDITDAEAVQA  130
            +V G +G +G+ ++  LL +G +   +  LD L S         + FV+ D+TD +A++ 
Sbjct  2    LVTGATGFIGSHLVRRLLEKGYE---VIGLDRLTSASNTARLADLRFVEGDLTDRDALEK  58

Query  131  AFTQPWPQQATSLPLTVFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGASCF  190
                  P         V H AAV   G   +    F    NV GT N+L AA+K G   F
Sbjct  59   LLADVRPD-------AVIHLAAVGGVGASIEDPEDF-IEANVLGTLNLLEAARKAGVKRF  110

Query  191  ISTSSGSVLLRRPSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGN------YAVSKAE  244
            +  SS  V                        D AE P+E     G       YA +K  
Sbjct  111  LFASSSEV----------------------YGDGAEIPQEETTLTGPLAPNSPYAAAKLA  148

Query  245  AERIIRAADSLESNFRTGCIRPANGIYGVGD  275
             E ++ A  +     R   +R  N +YG GD
Sbjct  149  GEWLVLAYAA-AYGLRAVILRLFN-VYGPGD  177


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 60.7 bits (148),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 31/158 (20%), Positives = 48/158 (30%), Gaps = 20/158 (13%)

Query  147  VFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGAS---CFISTS-SGSVLLRR  202
            + H+AA +   E +         VNV GTR +L  AK+         +ST+         
Sbjct  92   IIHSAATVNFVEPYDDAR----AVNVLGTREVLRLAKQGKQLKPFHHVSTAYVNGERGGL  147

Query  203  PSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGNYAVSKAEAERIIRAADSLESNFRTG  262
                  P       + +        P         Y  +K  AE+++R A          
Sbjct  148  VEEKPYPEGEDDMLLDED------EPALLGGLPNGYTQTKWLAEQLVREA--ARRGLPVV  199

Query  263  CIRP----ANGIYGVGDTTITGMYLIKGGVPSWTYPVI  296
              RP         G  +    G   + GG+     P I
Sbjct  200  IYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSI  237



Lambda      K        H        a         alpha
   0.320    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00001162

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogen...  113     5e-29
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  78.9    3e-17
CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  60.7    7e-11


>CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase 
family.  The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene 
isomerase (3 beta-HSD) catalyzes the oxidation 
and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene 
steroid precursors into the corresponding 
4-ene-ketosteroids necessary for the formation of all classes 
of steroid hormones.
Length=279

 Score = 113 bits (285),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 125/314 (40%), Gaps = 56/314 (18%)

Query  72   IVVGGSGLVGNWIITHLLARGEDPTAIRVLDL---QSPRQQILDQGV-GFVKVDITDAEA  127
            +V GG G +G  II  L+  GE    +RV DL       +      V  +++ D+TD + 
Sbjct  1    VVTGGGGFLGRHIIKLLVREGELKE-VRVFDLRESPELLEDFSKSNVIKYIQGDVTDKDD  59

Query  128  VQAAFTQPWPQQATSLPLTVFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGA  187
            +  A       +   +   V H A+ +      K       +VNV GT+N+L A  K G 
Sbjct  60   LDNAL------EGVDV---VIHTASAV--DVFGKYTFDEIMKVNVKGTQNVLEACVKAGV  108

Query  188  SCFISTSSGSVLLRRPSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGN-YAVSKAEAE  246
               + TSS  V+              P    Q I +  E    ++    + Y  SKA AE
Sbjct  109  RVLVYTSSAEVV-------------GPNSYGQPILNGDEE-TPYESTHQDAYPRSKAIAE  154

Query  247  RIIRAA-DSLESN---FRTGCIRPANGIYGVGDTTI---------TGMYLIKGGVPSWTY  293
            +++  A      N     T  +RPA GIYG GD  +          G+   K G  +   
Sbjct  155  KLVLKANGRPLKNGGRLYTCALRPA-GIYGEGDRLLVPFIVNLAKLGLAKFKTGDDN---  210

Query  294  PVIQSFVNAENVSIAHLLYEQRLLDHTASPTKLPNIGGQAFTVTDPNPAIAFSDL-YLLM  352
              +   V   NV+ AH+L  + L D    P K+ +I G A+ + D  P  ++ D    L+
Sbjct  211  -NLSDRVYVGNVAWAHILAARALQD----PKKMSSIAGNAYFIYDDTPVQSYDDFNRTLL  265

Query  353  TTLAKTP--IRFPR  364
             +L      I  P 
Sbjct  266  KSLGYDLPSISLPL  279


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 78.9 bits (195),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 83/211 (39%), Gaps = 42/211 (20%)

Query  72   IVVGGSGLVGNWIITHLLARGEDPTAIRVLD-LQSPRQQILDQGVGFVKVDITDAEAVQA  130
            +V G +G +G+ ++  LL +G +   +  LD L S         + FV+ D+TD +A++ 
Sbjct  2    LVTGATGFIGSHLVRRLLEKGYE---VIGLDRLTSASNTARLADLRFVEGDLTDRDALEK  58

Query  131  AFTQPWPQQATSLPLTVFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGASCF  190
                  P         V H AAV   G   +    F    NV GT N+L AA+K G   F
Sbjct  59   LLADVRPD-------AVIHLAAVGGVGASIEDPEDF-IEANVLGTLNLLEAARKAGVKRF  110

Query  191  ISTSSGSVLLRRPSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGN------YAVSKAE  244
            +  SS  V                        D AE P+E     G       YA +K  
Sbjct  111  LFASSSEV----------------------YGDGAEIPQEETTLTGPLAPNSPYAAAKLA  148

Query  245  AERIIRAADSLESNFRTGCIRPANGIYGVGD  275
             E ++ A  +     R   +R  N +YG GD
Sbjct  149  GEWLVLAYAA-AYGLRAVILRLFN-VYGPGD  177


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 60.7 bits (148),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 31/158 (20%), Positives = 48/158 (30%), Gaps = 20/158 (13%)

Query  147  VFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGAS---CFISTS-SGSVLLRR  202
            + H+AA +   E +         VNV GTR +L  AK+         +ST+         
Sbjct  92   IIHSAATVNFVEPYDDAR----AVNVLGTREVLRLAKQGKQLKPFHHVSTAYVNGERGGL  147

Query  203  PSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGNYAVSKAEAERIIRAADSLESNFRTG  262
                  P       + +        P         Y  +K  AE+++R A          
Sbjct  148  VEEKPYPEGEDDMLLDED------EPALLGGLPNGYTQTKWLAEQLVREA--ARRGLPVV  199

Query  263  CIRP----ANGIYGVGDTTITGMYLIKGGVPSWTYPVI  296
              RP         G  +    G   + GG+     P I
Sbjct  200  IYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSI  237



Lambda      K        H        a         alpha
   0.320    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00006999

Length=683
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461415 pfam04734, Ceramidase_alk, Neutral/alkaline non-lysoso...  757     0.0  
CDD:465340 pfam17048, Ceramidse_alk_C, Neutral/alkaline non-lysos...  257     3e-83


>CDD:461415 pfam04734, Ceramidase_alk, Neutral/alkaline non-lysosomal ceramidase, 
N-terminal.  This family represents N-terminal domain 
of a group of neutral/alkaline ceramidases found in both 
bacteria and eukaryotes. The EC classification is EC:3.5.1.23. 
The enzyme hydrolyzes ceramide to generate sphingosine and 
fatty acid. The enzyme plays a regulatory role in a variety 
of physiological events in eukaryotes and also functions as 
an exotoxin in particular bacteria. This N-terminal domain 
carries two metal-binding sites, the first for Zn2+ residing 
within the domain, and the second, for Mg2+/Ca2+ lying at 
the interface between the two domains.
Length=473

 Score = 757 bits (1957),  Expect = 0.0, Method: Composition-based stats.
 Identities = 264/502 (53%), Positives = 323/502 (64%), Gaps = 54/502 (11%)

Query  1    MLDQIGTGLRQRIYSRSFIFANPNQPDDTFIYIVIDAVTGDTAVRHGVLQALASLGGDYA  60
              +Q+GTGL QR+YSR+FI A+P  P D  +++V+D   GD AVR GVL+ LA+L GD  
Sbjct  24   NPEQVGTGLHQRLYSRAFIVADPA-PGDRVVFVVLDTGMGDQAVRLGVLKRLAALYGD--  80

Query  61   RYGERNVALTGTHSHSGPGAWNNYLLPQIPSKGFDKQSYQAIVDGVVLSIKRAHESLALG  120
             Y E NVAL+GTH+HSGPG + NYLL QI S GF KQS+ AIVDG+VLSIKRAHESLA G
Sbjct  81   LYTEDNVALSGTHTHSGPGGYLNYLLYQITSLGFVKQSFDAIVDGIVLSIKRAHESLAPG  140

Query  121  RLSFGSIDVENANINRSPYSYDANPEEEKARYSANVDKTMTLLRFDRESDNRTTAILTFF  180
            RL  G  ++ +ANINRSP +Y ANP EE+ARY  +VDKTMTLLRF R SD +   +LT+F
Sbjct  141  RLFVGKGELLDANINRSPSAYLANPAEERARYPDDVDKTMTLLRFVRASDGKPIGVLTWF  200

Query  181  PVHGTSLYNNNTLTTGDNKGVAAWLFERSVQ-DDANFADDFVAGFSQSNVGDTSPNVLGA  239
             VHGTS+ NNNTL +GDNKG AA+LFE+ V  +       FVA F+QSN           
Sbjct  201  AVHGTSMNNNNTLISGDNKGYAAYLFEKEVNGNSLPGKGGFVAAFAQSN-----------  249

Query  240  WCEDGSGQMCRYSDSTCGGKTEDCHGRGPFFREKDNGAKSCFEIGRLQYAAAKQLYSQMD  299
                                     GRGP F    +G +S   IG  Q+ AAK+LY   D
Sbjct  250  -------------------------GRGPGF----DGFESTRIIGERQFQAAKELY---D  277

Query  300  TSNTRITGNSNVRSFHAYRDLAGYTFQSPFNSSMLTTCSAALGFSFAAGTTDGPGLFDFT  359
            ++ T ++G   V S H Y D++  T   P N + + TC AALG+SFAAGTTDGPG FDFT
Sbjct  278  SAGTPVSG--PVDSRHQYVDMSNVTVDLP-NGTTVRTCPAALGYSFAAGTTDGPGAFDFT  334

Query  360  QNSSGPAESNPLWYVARAFVHQ-PSAKQKACQAPKDILLDVGANTQPYAWEPNIVDIQVL  418
            Q   G    NP W   R  +   PS +QKACQAPK ILLD G    PY W PNIVDIQ+L
Sbjct  335  Q---GDTTGNPFWDAVRGLLLAPPSQEQKACQAPKPILLDTGEMNFPYPWTPNIVDIQIL  391

Query  419  RVGQLFLIISTSEATTMAGRRWKEAIAKSAKDVLSIDSPLVVLGAPSNSYAHYVTTEEEY  478
            R+GQL +I    E TTMAGRR +EA+A +      +  P+VVL   +N+Y+HY+TT EEY
Sbjct  392  RIGQLVIIAVPGEFTTMAGRRLREAVAAALGSSGGLSEPIVVLAGLANTYSHYITTPEEY  451

Query  479  SRQRYEGASTLYGPHTLAAYIN  500
              QRYEGASTLYGPHTL+AYI 
Sbjct  452  QVQRYEGASTLYGPHTLSAYIQ  473


>CDD:465340 pfam17048, Ceramidse_alk_C, Neutral/alkaline non-lysosomal ceramidase, 
C-terminal.  This family represents C-terminal domain 
of a group of neutral/alkaline ceramidases found in both 
bacteria and eukaryotes. The EC classification is EC:3.5.1.23. 
The enzyme hydrolyzes ceramide to generate sphingosine and 
fatty acid. The enzyme plays a regulatory role in a variety 
of physiological events in eukaryotes and also functions 
as an exotoxin in particular bacteria. This C-terminal tail 
of the enzyme is highly conserved across all species and may 
play a role in the interaction of the enzyme with the plasma 
membranes. The tail is also vital for the stabilisation of 
the enzyme as a whole.
Length=165

 Score = 257 bits (660),  Expect = 3e-83, Method: Composition-based stats.
 Identities = 87/180 (48%), Positives = 107/180 (59%), Gaps = 16/180 (9%)

Query  502  TLTYLPYLGDSPNPATLPEMPTGVQPPINTDKSLSFIPGVVYDSAPIGKSFGDVVASVAK  561
             L   P L D     + P +P G  PP  T K LS +PGVV+D+ P+GKSFGDV+     
Sbjct  1    FLKLAPALADG----SPPPLPAGPTPPDLTSKQLSLLPGVVFDTPPLGKSFGDVLTDPNP  56

Query  562  STYKPGETVNTTFVGANPRNNLRQESTFAAVEWQNPASGRWEVVRTDNDWNLLYHWKRTN  621
            S Y+ G+TV+ TFVGANPRNNLR E TF AVE      G W  VR D DW+  +HWKRT+
Sbjct  57   S-YRRGDTVSVTFVGANPRNNLRLEGTFLAVERLVD-GGTWTTVRDDADWSTRFHWKRTS  114

Query  622  TILGYSEVTLEWQIEDDYYNTGNPKSLQAGTYRFHYYGDAKNIQ-GQIKSFEGIGKPFTV  680
             +LG SEVT+EW+I  D            GTYR  Y+GD+K++  G I  FEG    FTV
Sbjct  115  GLLGTSEVTIEWEIPADT---------PPGTYRIRYFGDSKSLLGGSITPFEGTSSSFTV  165



Lambda      K        H        a         alpha
   0.316    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 870126100


Query= TCONS_00001161

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogen...  109     2e-27
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  73.5    3e-15
CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  61.1    6e-11


>CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase 
family.  The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene 
isomerase (3 beta-HSD) catalyzes the oxidation 
and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene 
steroid precursors into the corresponding 
4-ene-ketosteroids necessary for the formation of all classes 
of steroid hormones.
Length=279

 Score = 109 bits (275),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 81/320 (25%), Positives = 124/320 (39%), Gaps = 58/320 (18%)

Query  93   SGLVGNWIITHLLARGEDPTAIRVLDL---QSPRQQILDQGV-GFVKVDITDAEAVQAAF  148
             G +G  II  L+  GE    +RV DL       +      V  +++ D+TD + +  A 
Sbjct  6    GGFLGRHIIKLLVREGELKE-VRVFDLRESPELLEDFSKSNVIKYIQGDVTDKDDLDNAL  64

Query  149  TQPWPQQATSLPLTVFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGASCFIS  208
                  +   +   V H A+ +      K       +VNV GT+N+L A  K G    + 
Sbjct  65   ------EGVDV---VIHTASAV--DVFGKYTFDEIMKVNVKGTQNVLEACVKAGVRVLVY  113

Query  209  TSSGSVLLRRPSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGN-YAVSKAEAERIIRA  267
            TSS  V+              P    Q I +  E    ++    + Y  SKA AE+++  
Sbjct  114  TSSAEVV-------------GPNSYGQPILNGDEE-TPYESTHQDAYPRSKAIAEKLVLK  159

Query  268  A-DSLESN---FRTGCIRPANGIYGVGDTTITGMYLIKGGVPRYVSSLPQGRDLHTSLTP  323
            A      N     T  +RPA GIYG GD  +         VP  V+    G     +   
Sbjct  160  ANGRPLKNGGRLYTCALRPA-GIYGEGDRLL---------VPFIVNLAKLGLAKFKTGDD  209

Query  324  SNSWTYPVIQSFVNAENVSIAHLLYEQRLLDHTASPTKLPNIGGQAFTVTDPNPAIAFSD  383
            +N      +   V   NV+ AH+L  + L D    P K+ +I G A+ + D  P  ++ D
Sbjct  210  NN------LSDRVYVGNVAWAHILAARALQD----PKKMSSIAGNAYFIYDDTPVQSYDD  259

Query  384  L-YLLMTTLAKTP--IRFPR  400
                L+ +L      I  P 
Sbjct  260  FNRTLLKSLGYDLPSISLPL  279


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 73.5 bits (181),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 83/211 (39%), Gaps = 44/211 (21%)

Query  90   LIT--SGLVGNWIITHLLARGEDPTAIRVLD-LQSPRQQILDQGVGFVKVDITDAEAVQA  146
            L+T  +G +G+ ++  LL +G +   +  LD L S         + FV+ D+TD +A++ 
Sbjct  2    LVTGATGFIGSHLVRRLLEKGYE---VIGLDRLTSASNTARLADLRFVEGDLTDRDALEK  58

Query  147  AFTQPWPQQATSLPLTVFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGASCF  206
                  P         V H AAV   G   +    F    NV GT N+L AA+K G   F
Sbjct  59   LLADVRPD-------AVIHLAAVGGVGASIEDPEDF-IEANVLGTLNLLEAARKAGVKRF  110

Query  207  ISTSSGSVLLRRPSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGN------YAVSKAE  260
            +  SS  V                        D AE P+E     G       YA +K  
Sbjct  111  LFASSSEV----------------------YGDGAEIPQEETTLTGPLAPNSPYAAAKLA  148

Query  261  AERIIRAADSLESNFRTGCIRPANGIYGVGD  291
             E ++ A  +     R   +R  N +YG GD
Sbjct  149  GEWLVLAYAA-AYGLRAVILRLFN-VYGPGD  177


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 61.1 bits (149),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 53/170 (31%), Gaps = 21/170 (12%)

Query  163  VFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGAS---CFISTS-SGSVLLRR  218
            + H+AA +   E +         VNV GTR +L  AK+         +ST+         
Sbjct  92   IIHSAATVNFVEPYDDAR----AVNVLGTREVLRLAKQGKQLKPFHHVSTAYVNGERGGL  147

Query  219  PSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGNYAVSKAEAERIIRAADSLESNFRTG  278
                  P       + +        P         Y  +K  AE+++R A          
Sbjct  148  VEEKPYPEGEDDMLLDED------EPALLGGLPNGYTQTKWLAEQLVREA--ARRGLPVV  199

Query  279  CIRP----ANGIYGVGDTTITGMYLIKGGVPR-YVSSLPQGRDLHTSLTP  323
              RP         G  +    G   + GG+ +  + S+    D    L P
Sbjct  200  IYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSILGDPDAVLDLVP  249



Lambda      K        H        a         alpha
   0.319    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 654076512


Query= TCONS_00001163

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogen...  117     4e-30
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  79.3    3e-17
CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  61.1    5e-11


>CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase 
family.  The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene 
isomerase (3 beta-HSD) catalyzes the oxidation 
and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene 
steroid precursors into the corresponding 
4-ene-ketosteroids necessary for the formation of all classes 
of steroid hormones.
Length=279

 Score = 117 bits (294),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 84/325 (26%), Positives = 128/325 (39%), Gaps = 58/325 (18%)

Query  72   IVVGGSGLVGNWIITHLLARGEDPTAIRVLDL---QSPRQQILDQGV-GFVKVDITDAEA  127
            +V GG G +G  II  L+  GE    +RV DL       +      V  +++ D+TD + 
Sbjct  1    VVTGGGGFLGRHIIKLLVREGELKE-VRVFDLRESPELLEDFSKSNVIKYIQGDVTDKDD  59

Query  128  VQAAFTQPWPQQATSLPLTVFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGA  187
            +  A       +   +   V H A+ +      K       +VNV GT+N+L A  K G 
Sbjct  60   LDNAL------EGVDV---VIHTASAV--DVFGKYTFDEIMKVNVKGTQNVLEACVKAGV  108

Query  188  SCFISTSSGSVLLRRPSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGN-YAVSKAEAE  246
               + TSS  V+              P    Q I +  E    ++    + Y  SKA AE
Sbjct  109  RVLVYTSSAEVV-------------GPNSYGQPILNGDEE-TPYESTHQDAYPRSKAIAE  154

Query  247  RIIRAA-DSLESN---FRTGCIRPANGIYGVGDTTITGMYLIKGGVPRYVSSLPQGRDLH  302
            +++  A      N     T  +RPA GIYG GD  +         VP  V+    G    
Sbjct  155  KLVLKANGRPLKNGGRLYTCALRPA-GIYGEGDRLL---------VPFIVNLAKLGLAKF  204

Query  303  TSLTPSNSWTYPVIQSFVNAENVSIAHLLYEQRLLDHTASPTKLPNIGGQAFTVTDPNPA  362
             +   +N      +   V   NV+ AH+L  + L D    P K+ +I G A+ + D  P 
Sbjct  205  KTGDDNN------LSDRVYVGNVAWAHILAARALQD----PKKMSSIAGNAYFIYDDTPV  254

Query  363  IAFSDL-YLLMTTLAKTP--IRFPR  384
             ++ D    L+ +L      I  P 
Sbjct  255  QSYDDFNRTLLKSLGYDLPSISLPL  279


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 79.3 bits (196),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 83/211 (39%), Gaps = 42/211 (20%)

Query  72   IVVGGSGLVGNWIITHLLARGEDPTAIRVLD-LQSPRQQILDQGVGFVKVDITDAEAVQA  130
            +V G +G +G+ ++  LL +G +   +  LD L S         + FV+ D+TD +A++ 
Sbjct  2    LVTGATGFIGSHLVRRLLEKGYE---VIGLDRLTSASNTARLADLRFVEGDLTDRDALEK  58

Query  131  AFTQPWPQQATSLPLTVFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGASCF  190
                  P         V H AAV   G   +    F    NV GT N+L AA+K G   F
Sbjct  59   LLADVRPD-------AVIHLAAVGGVGASIEDPEDF-IEANVLGTLNLLEAARKAGVKRF  110

Query  191  ISTSSGSVLLRRPSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGN------YAVSKAE  244
            +  SS  V                        D AE P+E     G       YA +K  
Sbjct  111  LFASSSEV----------------------YGDGAEIPQEETTLTGPLAPNSPYAAAKLA  148

Query  245  AERIIRAADSLESNFRTGCIRPANGIYGVGD  275
             E ++ A  +     R   +R  N +YG GD
Sbjct  149  GEWLVLAYAA-AYGLRAVILRLFN-VYGPGD  177


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 61.1 bits (149),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 53/170 (31%), Gaps = 21/170 (12%)

Query  147  VFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGAS---CFISTS-SGSVLLRR  202
            + H+AA +   E +         VNV GTR +L  AK+         +ST+         
Sbjct  92   IIHSAATVNFVEPYDDAR----AVNVLGTREVLRLAKQGKQLKPFHHVSTAYVNGERGGL  147

Query  203  PSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGNYAVSKAEAERIIRAADSLESNFRTG  262
                  P       + +        P         Y  +K  AE+++R A          
Sbjct  148  VEEKPYPEGEDDMLLDED------EPALLGGLPNGYTQTKWLAEQLVREA--ARRGLPVV  199

Query  263  CIRP----ANGIYGVGDTTITGMYLIKGGVPR-YVSSLPQGRDLHTSLTP  307
              RP         G  +    G   + GG+ +  + S+    D    L P
Sbjct  200  IYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSILGDPDAVLDLVP  249



Lambda      K        H        a         alpha
   0.319    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00001164

Length=503
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogen...  106     3e-26
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  73.1    3e-15
CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  60.7    8e-11


>CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase 
family.  The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene 
isomerase (3 beta-HSD) catalyzes the oxidation 
and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene 
steroid precursors into the corresponding 
4-ene-ketosteroids necessary for the formation of all classes 
of steroid hormones.
Length=279

 Score = 106 bits (266),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 79/309 (26%), Positives = 121/309 (39%), Gaps = 56/309 (18%)

Query  93   SGLVGNWIITHLLARGEDPTAIRVLDL---QSPRQQILDQGV-GFVKVDITDAEAVQAAF  148
             G +G  II  L+  GE    +RV DL       +      V  +++ D+TD + +  A 
Sbjct  6    GGFLGRHIIKLLVREGELKE-VRVFDLRESPELLEDFSKSNVIKYIQGDVTDKDDLDNAL  64

Query  149  TQPWPQQATSLPLTVFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGASCFIS  208
                  +   +   V H A+ +      K       +VNV GT+N+L A  K G    + 
Sbjct  65   ------EGVDV---VIHTASAV--DVFGKYTFDEIMKVNVKGTQNVLEACVKAGVRVLVY  113

Query  209  TSSGSVLLRRPSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGN-YAVSKAEAERIIRA  267
            TSS  V+              P    Q I +  E    ++    + Y  SKA AE+++  
Sbjct  114  TSSAEVV-------------GPNSYGQPILNGDEE-TPYESTHQDAYPRSKAIAEKLVLK  159

Query  268  A-DSLESN---FRTGCIRPANGIYGVGDTTI---------TGMYLIKGGVPSWTYPVIQS  314
            A      N     T  +RPA GIYG GD  +          G+   K G  +     +  
Sbjct  160  ANGRPLKNGGRLYTCALRPA-GIYGEGDRLLVPFIVNLAKLGLAKFKTGDDN----NLSD  214

Query  315  FVNAENVSIAHLLYEQRLLDHTASPTKLPNIGGQAFTVTDPNPAIAFSDL-YLLMTTLAK  373
             V   NV+ AH+L  + L D    P K+ +I G A+ + D  P  ++ D    L+ +L  
Sbjct  215  RVYVGNVAWAHILAARALQD----PKKMSSIAGNAYFIYDDTPVQSYDDFNRTLLKSLGY  270

Query  374  TP--IRFPR  380
                I  P 
Sbjct  271  DLPSISLPL  279


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 73.1 bits (180),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 83/211 (39%), Gaps = 44/211 (21%)

Query  90   LIT--SGLVGNWIITHLLARGEDPTAIRVLD-LQSPRQQILDQGVGFVKVDITDAEAVQA  146
            L+T  +G +G+ ++  LL +G +   +  LD L S         + FV+ D+TD +A++ 
Sbjct  2    LVTGATGFIGSHLVRRLLEKGYE---VIGLDRLTSASNTARLADLRFVEGDLTDRDALEK  58

Query  147  AFTQPWPQQATSLPLTVFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGASCF  206
                  P         V H AAV   G   +    F    NV GT N+L AA+K G   F
Sbjct  59   LLADVRPD-------AVIHLAAVGGVGASIEDPEDF-IEANVLGTLNLLEAARKAGVKRF  110

Query  207  ISTSSGSVLLRRPSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGN------YAVSKAE  260
            +  SS  V                        D AE P+E     G       YA +K  
Sbjct  111  LFASSSEV----------------------YGDGAEIPQEETTLTGPLAPNSPYAAAKLA  148

Query  261  AERIIRAADSLESNFRTGCIRPANGIYGVGD  291
             E ++ A  +     R   +R  N +YG GD
Sbjct  149  GEWLVLAYAA-AYGLRAVILRLFN-VYGPGD  177


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 60.7 bits (148),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 31/158 (20%), Positives = 48/158 (30%), Gaps = 20/158 (13%)

Query  163  VFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGAS---CFISTS-SGSVLLRR  218
            + H+AA +   E +         VNV GTR +L  AK+         +ST+         
Sbjct  92   IIHSAATVNFVEPYDDAR----AVNVLGTREVLRLAKQGKQLKPFHHVSTAYVNGERGGL  147

Query  219  PSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGNYAVSKAEAERIIRAADSLESNFRTG  278
                  P       + +        P         Y  +K  AE+++R A          
Sbjct  148  VEEKPYPEGEDDMLLDED------EPALLGGLPNGYTQTKWLAEQLVREA--ARRGLPVV  199

Query  279  CIRP----ANGIYGVGDTTITGMYLIKGGVPSWTYPVI  312
              RP         G  +    G   + GG+     P I
Sbjct  200  IYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSI  237



Lambda      K        H        a         alpha
   0.320    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0571    0.140     1.90     42.6     43.6 

Effective search space used: 623795192


Query= TCONS_00007000

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogen...  113     2e-29
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  79.6    2e-17
CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  61.1    4e-11


>CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase 
family.  The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene 
isomerase (3 beta-HSD) catalyzes the oxidation 
and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene 
steroid precursors into the corresponding 
4-ene-ketosteroids necessary for the formation of all classes 
of steroid hormones.
Length=279

 Score = 113 bits (285),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 125/314 (40%), Gaps = 56/314 (18%)

Query  72   IVVGGSGLVGNWIITHLLARGEDPTAIRVLDL---QSPRQQILDQGV-GFVKVDITDAEA  127
            +V GG G +G  II  L+  GE    +RV DL       +      V  +++ D+TD + 
Sbjct  1    VVTGGGGFLGRHIIKLLVREGELKE-VRVFDLRESPELLEDFSKSNVIKYIQGDVTDKDD  59

Query  128  VQAAFTQPWPQQATSLPLTVFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGA  187
            +  A       +   +   V H A+ +      K       +VNV GT+N+L A  K G 
Sbjct  60   LDNAL------EGVDV---VIHTASAV--DVFGKYTFDEIMKVNVKGTQNVLEACVKAGV  108

Query  188  SCFISTSSGSVLLRRPSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGN-YAVSKAEAE  246
               + TSS  V+              P    Q I +  E    ++    + Y  SKA AE
Sbjct  109  RVLVYTSSAEVV-------------GPNSYGQPILNGDEE-TPYESTHQDAYPRSKAIAE  154

Query  247  RIIRAA-DSLESN---FRTGCIRPANGIYGVGDTTI---------TGMYLIKGGVPSWTY  293
            +++  A      N     T  +RPA GIYG GD  +          G+   K G  +   
Sbjct  155  KLVLKANGRPLKNGGRLYTCALRPA-GIYGEGDRLLVPFIVNLAKLGLAKFKTGDDN---  210

Query  294  PVIQSFVNAENVSIAHLLYEQRLLDHTASPTKLPNIGGQAFTVTDPNPAIAFSDL-YLLM  352
              +   V   NV+ AH+L  + L D    P K+ +I G A+ + D  P  ++ D    L+
Sbjct  211  -NLSDRVYVGNVAWAHILAARALQD----PKKMSSIAGNAYFIYDDTPVQSYDDFNRTLL  265

Query  353  TTLAKTP--IRFPR  364
             +L      I  P 
Sbjct  266  KSLGYDLPSISLPL  279


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 79.6 bits (197),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 83/211 (39%), Gaps = 42/211 (20%)

Query  72   IVVGGSGLVGNWIITHLLARGEDPTAIRVLD-LQSPRQQILDQGVGFVKVDITDAEAVQA  130
            +V G +G +G+ ++  LL +G +   +  LD L S         + FV+ D+TD +A++ 
Sbjct  2    LVTGATGFIGSHLVRRLLEKGYE---VIGLDRLTSASNTARLADLRFVEGDLTDRDALEK  58

Query  131  AFTQPWPQQATSLPLTVFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGASCF  190
                  P         V H AAV   G   +    F    NV GT N+L AA+K G   F
Sbjct  59   LLADVRPD-------AVIHLAAVGGVGASIEDPEDF-IEANVLGTLNLLEAARKAGVKRF  110

Query  191  ISTSSGSVLLRRPSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGN------YAVSKAE  244
            +  SS  V                        D AE P+E     G       YA +K  
Sbjct  111  LFASSSEV----------------------YGDGAEIPQEETTLTGPLAPNSPYAAAKLA  148

Query  245  AERIIRAADSLESNFRTGCIRPANGIYGVGD  275
             E ++ A  +     R   +R  N +YG GD
Sbjct  149  GEWLVLAYAA-AYGLRAVILRLFN-VYGPGD  177


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 61.1 bits (149),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 31/158 (20%), Positives = 48/158 (30%), Gaps = 20/158 (13%)

Query  147  VFHNAAVIRPGERHKAFLQFCTRVNVDGTRNILAAAKKHGAS---CFISTS-SGSVLLRR  202
            + H+AA +   E +         VNV GTR +L  AK+         +ST+         
Sbjct  92   IIHSAATVNFVEPYDDAR----AVNVLGTREVLRLAKQGKQLKPFHHVSTAYVNGERGGL  147

Query  203  PSFWITPWTNWPKRVVQIISDAAETPKEHDQFFGNYAVSKAEAERIIRAADSLESNFRTG  262
                  P       + +        P         Y  +K  AE+++R A          
Sbjct  148  VEEKPYPEGEDDMLLDED------EPALLGGLPNGYTQTKWLAEQLVREA--ARRGLPVV  199

Query  263  CIRP----ANGIYGVGDTTITGMYLIKGGVPSWTYPVI  296
              RP         G  +    G   + GG+     P I
Sbjct  200  IYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSI  237



Lambda      K        H        a         alpha
   0.321    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00001165

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00001166

Length=683
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461415 pfam04734, Ceramidase_alk, Neutral/alkaline non-lysoso...  757     0.0  
CDD:465340 pfam17048, Ceramidse_alk_C, Neutral/alkaline non-lysos...  257     3e-83


>CDD:461415 pfam04734, Ceramidase_alk, Neutral/alkaline non-lysosomal ceramidase, 
N-terminal.  This family represents N-terminal domain 
of a group of neutral/alkaline ceramidases found in both 
bacteria and eukaryotes. The EC classification is EC:3.5.1.23. 
The enzyme hydrolyzes ceramide to generate sphingosine and 
fatty acid. The enzyme plays a regulatory role in a variety 
of physiological events in eukaryotes and also functions as 
an exotoxin in particular bacteria. This N-terminal domain 
carries two metal-binding sites, the first for Zn2+ residing 
within the domain, and the second, for Mg2+/Ca2+ lying at 
the interface between the two domains.
Length=473

 Score = 757 bits (1957),  Expect = 0.0, Method: Composition-based stats.
 Identities = 264/502 (53%), Positives = 323/502 (64%), Gaps = 54/502 (11%)

Query  1    MLDQIGTGLRQRIYSRSFIFANPNQPDDTFIYIVIDAVTGDTAVRHGVLQALASLGGDYA  60
              +Q+GTGL QR+YSR+FI A+P  P D  +++V+D   GD AVR GVL+ LA+L GD  
Sbjct  24   NPEQVGTGLHQRLYSRAFIVADPA-PGDRVVFVVLDTGMGDQAVRLGVLKRLAALYGD--  80

Query  61   RYGERNVALTGTHSHSGPGAWNNYLLPQIPSKGFDKQSYQAIVDGVVLSIKRAHESLALG  120
             Y E NVAL+GTH+HSGPG + NYLL QI S GF KQS+ AIVDG+VLSIKRAHESLA G
Sbjct  81   LYTEDNVALSGTHTHSGPGGYLNYLLYQITSLGFVKQSFDAIVDGIVLSIKRAHESLAPG  140

Query  121  RLSFGSIDVENANINRSPYSYDANPEEEKARYSANVDKTMTLLRFDRESDNRTTAILTFF  180
            RL  G  ++ +ANINRSP +Y ANP EE+ARY  +VDKTMTLLRF R SD +   +LT+F
Sbjct  141  RLFVGKGELLDANINRSPSAYLANPAEERARYPDDVDKTMTLLRFVRASDGKPIGVLTWF  200

Query  181  PVHGTSLYNNNTLTTGDNKGVAAWLFERSVQ-DDANFADDFVAGFSQSNVGDTSPNVLGA  239
             VHGTS+ NNNTL +GDNKG AA+LFE+ V  +       FVA F+QSN           
Sbjct  201  AVHGTSMNNNNTLISGDNKGYAAYLFEKEVNGNSLPGKGGFVAAFAQSN-----------  249

Query  240  WCEDGSGQMCRYSDSTCGGKTEDCHGRGPFFREKDNGAKSCFEIGRLQYAAAKQLYSQMD  299
                                     GRGP F    +G +S   IG  Q+ AAK+LY   D
Sbjct  250  -------------------------GRGPGF----DGFESTRIIGERQFQAAKELY---D  277

Query  300  TSNTRITGNSNVRSFHAYRDLAGYTFQSPFNSSMLTTCSAALGFSFAAGTTDGPGLFDFT  359
            ++ T ++G   V S H Y D++  T   P N + + TC AALG+SFAAGTTDGPG FDFT
Sbjct  278  SAGTPVSG--PVDSRHQYVDMSNVTVDLP-NGTTVRTCPAALGYSFAAGTTDGPGAFDFT  334

Query  360  QNSSGPAESNPLWYVARAFVHQ-PSAKQKACQAPKDILLDVGANTQPYAWEPNIVDIQVL  418
            Q   G    NP W   R  +   PS +QKACQAPK ILLD G    PY W PNIVDIQ+L
Sbjct  335  Q---GDTTGNPFWDAVRGLLLAPPSQEQKACQAPKPILLDTGEMNFPYPWTPNIVDIQIL  391

Query  419  RVGQLFLIISTSEATTMAGRRWKEAIAKSAKDVLSIDSPLVVLGAPSNSYAHYVTTEEEY  478
            R+GQL +I    E TTMAGRR +EA+A +      +  P+VVL   +N+Y+HY+TT EEY
Sbjct  392  RIGQLVIIAVPGEFTTMAGRRLREAVAAALGSSGGLSEPIVVLAGLANTYSHYITTPEEY  451

Query  479  SRQRYEGASTLYGPHTLAAYIN  500
              QRYEGASTLYGPHTL+AYI 
Sbjct  452  QVQRYEGASTLYGPHTLSAYIQ  473


>CDD:465340 pfam17048, Ceramidse_alk_C, Neutral/alkaline non-lysosomal ceramidase, 
C-terminal.  This family represents C-terminal domain 
of a group of neutral/alkaline ceramidases found in both 
bacteria and eukaryotes. The EC classification is EC:3.5.1.23. 
The enzyme hydrolyzes ceramide to generate sphingosine and 
fatty acid. The enzyme plays a regulatory role in a variety 
of physiological events in eukaryotes and also functions 
as an exotoxin in particular bacteria. This C-terminal tail 
of the enzyme is highly conserved across all species and may 
play a role in the interaction of the enzyme with the plasma 
membranes. The tail is also vital for the stabilisation of 
the enzyme as a whole.
Length=165

 Score = 257 bits (660),  Expect = 3e-83, Method: Composition-based stats.
 Identities = 87/180 (48%), Positives = 107/180 (59%), Gaps = 16/180 (9%)

Query  502  TLTYLPYLGDSPNPATLPEMPTGVQPPINTDKSLSFIPGVVYDSAPIGKSFGDVVASVAK  561
             L   P L D     + P +P G  PP  T K LS +PGVV+D+ P+GKSFGDV+     
Sbjct  1    FLKLAPALADG----SPPPLPAGPTPPDLTSKQLSLLPGVVFDTPPLGKSFGDVLTDPNP  56

Query  562  STYKPGETVNTTFVGANPRNNLRQESTFAAVEWQNPASGRWEVVRTDNDWNLLYHWKRTN  621
            S Y+ G+TV+ TFVGANPRNNLR E TF AVE      G W  VR D DW+  +HWKRT+
Sbjct  57   S-YRRGDTVSVTFVGANPRNNLRLEGTFLAVERLVD-GGTWTTVRDDADWSTRFHWKRTS  114

Query  622  TILGYSEVTLEWQIEDDYYNTGNPKSLQAGTYRFHYYGDAKNIQ-GQIKSFEGIGKPFTV  680
             +LG SEVT+EW+I  D            GTYR  Y+GD+K++  G I  FEG    FTV
Sbjct  115  GLLGTSEVTIEWEIPADT---------PPGTYRIRYFGDSKSLLGGSITPFEGTSSSFTV  165



Lambda      K        H        a         alpha
   0.316    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 870126100


Query= TCONS_00007001

Length=764
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461415 pfam04734, Ceramidase_alk, Neutral/alkaline non-lysoso...  803     0.0  
CDD:465340 pfam17048, Ceramidse_alk_C, Neutral/alkaline non-lysos...  258     1e-82


>CDD:461415 pfam04734, Ceramidase_alk, Neutral/alkaline non-lysosomal ceramidase, 
N-terminal.  This family represents N-terminal domain 
of a group of neutral/alkaline ceramidases found in both 
bacteria and eukaryotes. The EC classification is EC:3.5.1.23. 
The enzyme hydrolyzes ceramide to generate sphingosine and 
fatty acid. The enzyme plays a regulatory role in a variety 
of physiological events in eukaryotes and also functions as 
an exotoxin in particular bacteria. This N-terminal domain 
carries two metal-binding sites, the first for Zn2+ residing 
within the domain, and the second, for Mg2+/Ca2+ lying at 
the interface between the two domains.
Length=473

 Score = 803 bits (2077),  Expect = 0.0, Method: Composition-based stats.
 Identities = 280/525 (53%), Positives = 342/525 (65%), Gaps = 54/525 (10%)

Query  59   FLLGAGKADITGPVVEVALSGYAMLDQIGTGLRQRIYSRSFIFANPNQPDDTFIYIVIDA  118
            +L+G GKADITGPV EV + GYA  +Q+GTGL QR+YSR+FI A+P  P D  +++V+D 
Sbjct  1    YLVGVGKADITGPVAEVNMMGYANPEQVGTGLHQRLYSRAFIVADPA-PGDRVVFVVLDT  59

Query  119  VTGDTAVRHGVLQALASLGGDYARYGERNVALTGTHSHSGPGAWNNYLLPQIPSKGFDKQ  178
              GD AVR GVL+ LA+L GD   Y E NVAL+GTH+HSGPG + NYLL QI S GF KQ
Sbjct  60   GMGDQAVRLGVLKRLAALYGD--LYTEDNVALSGTHTHSGPGGYLNYLLYQITSLGFVKQ  117

Query  179  SYQAIVDGVVLSIKRAHESLALGRLSFGSIDVENANINRSPYSYDANPEEEKARYSANVD  238
            S+ AIVDG+VLSIKRAHESLA GRL  G  ++ +ANINRSP +Y ANP EE+ARY  +VD
Sbjct  118  SFDAIVDGIVLSIKRAHESLAPGRLFVGKGELLDANINRSPSAYLANPAEERARYPDDVD  177

Query  239  KTMTLLRFDRESDNRTTAILTFFPVHGTSLYNNNTLTTGDNKGVAAWLFERSVQ-DDANF  297
            KTMTLLRF R SD +   +LT+F VHGTS+ NNNTL +GDNKG AA+LFE+ V  +    
Sbjct  178  KTMTLLRFVRASDGKPIGVLTWFAVHGTSMNNNNTLISGDNKGYAAYLFEKEVNGNSLPG  237

Query  298  ADDFVAGFSQSNVGDTSPNVLGAWCEDGSGQMCRYSDSTCGGKTEDCHGRGPFFREKDNG  357
               FVA F+QSN                                    GRGP F    +G
Sbjct  238  KGGFVAAFAQSN------------------------------------GRGPGF----DG  257

Query  358  AKSCFEIGRLQYAAAKQLYSQMDTSNTRITGNSNVRSFHAYRDLAGYTFQSPFNSSMLTT  417
             +S   IG  Q+ AAK+LY   D++ T ++G   V S H Y D++  T   P N + + T
Sbjct  258  FESTRIIGERQFQAAKELY---DSAGTPVSG--PVDSRHQYVDMSNVTVDLP-NGTTVRT  311

Query  418  CSAALGFSFAAGTTDGPGLFDFTQNSSGPAESNPLWYVARAFVHQ-PSAKQKACQAPKDI  476
            C AALG+SFAAGTTDGPG FDFTQ   G    NP W   R  +   PS +QKACQAPK I
Sbjct  312  CPAALGYSFAAGTTDGPGAFDFTQ---GDTTGNPFWDAVRGLLLAPPSQEQKACQAPKPI  368

Query  477  LLDVGANTQPYAWEPNIVDIQVLRVGQLFLIISTSEATTMAGRRWKEAIAKSAKDVLSID  536
            LLD G    PY W PNIVDIQ+LR+GQL +I    E TTMAGRR +EA+A +      + 
Sbjct  369  LLDTGEMNFPYPWTPNIVDIQILRIGQLVIIAVPGEFTTMAGRRLREAVAAALGSSGGLS  428

Query  537  SPLVVLGAPSNSYAHYVTTEEEYSRQRYEGASTLYGPHTLAAYIN  581
             P+VVL   +N+Y+HY+TT EEY  QRYEGASTLYGPHTL+AYI 
Sbjct  429  EPIVVLAGLANTYSHYITTPEEYQVQRYEGASTLYGPHTLSAYIQ  473


>CDD:465340 pfam17048, Ceramidse_alk_C, Neutral/alkaline non-lysosomal ceramidase, 
C-terminal.  This family represents C-terminal domain 
of a group of neutral/alkaline ceramidases found in both 
bacteria and eukaryotes. The EC classification is EC:3.5.1.23. 
The enzyme hydrolyzes ceramide to generate sphingosine and 
fatty acid. The enzyme plays a regulatory role in a variety 
of physiological events in eukaryotes and also functions 
as an exotoxin in particular bacteria. This C-terminal tail 
of the enzyme is highly conserved across all species and may 
play a role in the interaction of the enzyme with the plasma 
membranes. The tail is also vital for the stabilisation of 
the enzyme as a whole.
Length=165

 Score = 258 bits (662),  Expect = 1e-82, Method: Composition-based stats.
 Identities = 87/180 (48%), Positives = 107/180 (59%), Gaps = 16/180 (9%)

Query  583  TLTYLPYLGDSPNPATLPEMPTGVQPPINTDKSLSFIPGVVYDSAPIGKSFGDVVASVAK  642
             L   P L D     + P +P G  PP  T K LS +PGVV+D+ P+GKSFGDV+     
Sbjct  1    FLKLAPALADG----SPPPLPAGPTPPDLTSKQLSLLPGVVFDTPPLGKSFGDVLTDPNP  56

Query  643  STYKPGETVNTTFVGANPRNNLRQESTFAAVEWQNPASGRWEVVRTDNDWNLLYHWKRTN  702
            S Y+ G+TV+ TFVGANPRNNLR E TF AVE      G W  VR D DW+  +HWKRT+
Sbjct  57   S-YRRGDTVSVTFVGANPRNNLRLEGTFLAVERLVD-GGTWTTVRDDADWSTRFHWKRTS  114

Query  703  TILGYSEVTLEWQIEDDYYNTGNPKSLQAGTYRFHYYGDAKNIQ-GQIKSFEGIGKPFTV  761
             +LG SEVT+EW+I  D            GTYR  Y+GD+K++  G I  FEG    FTV
Sbjct  115  GLLGTSEVTIEWEIPADT---------PPGTYRIRYFGDSKSLLGGSITPFEGTSSSFTV  165



Lambda      K        H        a         alpha
   0.316    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 974951840


Query= TCONS_00001167

Length=764
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461415 pfam04734, Ceramidase_alk, Neutral/alkaline non-lysoso...  803     0.0  
CDD:465340 pfam17048, Ceramidse_alk_C, Neutral/alkaline non-lysos...  258     1e-82


>CDD:461415 pfam04734, Ceramidase_alk, Neutral/alkaline non-lysosomal ceramidase, 
N-terminal.  This family represents N-terminal domain 
of a group of neutral/alkaline ceramidases found in both 
bacteria and eukaryotes. The EC classification is EC:3.5.1.23. 
The enzyme hydrolyzes ceramide to generate sphingosine and 
fatty acid. The enzyme plays a regulatory role in a variety 
of physiological events in eukaryotes and also functions as 
an exotoxin in particular bacteria. This N-terminal domain 
carries two metal-binding sites, the first for Zn2+ residing 
within the domain, and the second, for Mg2+/Ca2+ lying at 
the interface between the two domains.
Length=473

 Score = 803 bits (2077),  Expect = 0.0, Method: Composition-based stats.
 Identities = 280/525 (53%), Positives = 342/525 (65%), Gaps = 54/525 (10%)

Query  59   FLLGAGKADITGPVVEVALSGYAMLDQIGTGLRQRIYSRSFIFANPNQPDDTFIYIVIDA  118
            +L+G GKADITGPV EV + GYA  +Q+GTGL QR+YSR+FI A+P  P D  +++V+D 
Sbjct  1    YLVGVGKADITGPVAEVNMMGYANPEQVGTGLHQRLYSRAFIVADPA-PGDRVVFVVLDT  59

Query  119  VTGDTAVRHGVLQALASLGGDYARYGERNVALTGTHSHSGPGAWNNYLLPQIPSKGFDKQ  178
              GD AVR GVL+ LA+L GD   Y E NVAL+GTH+HSGPG + NYLL QI S GF KQ
Sbjct  60   GMGDQAVRLGVLKRLAALYGD--LYTEDNVALSGTHTHSGPGGYLNYLLYQITSLGFVKQ  117

Query  179  SYQAIVDGVVLSIKRAHESLALGRLSFGSIDVENANINRSPYSYDANPEEEKARYSANVD  238
            S+ AIVDG+VLSIKRAHESLA GRL  G  ++ +ANINRSP +Y ANP EE+ARY  +VD
Sbjct  118  SFDAIVDGIVLSIKRAHESLAPGRLFVGKGELLDANINRSPSAYLANPAEERARYPDDVD  177

Query  239  KTMTLLRFDRESDNRTTAILTFFPVHGTSLYNNNTLTTGDNKGVAAWLFERSVQ-DDANF  297
            KTMTLLRF R SD +   +LT+F VHGTS+ NNNTL +GDNKG AA+LFE+ V  +    
Sbjct  178  KTMTLLRFVRASDGKPIGVLTWFAVHGTSMNNNNTLISGDNKGYAAYLFEKEVNGNSLPG  237

Query  298  ADDFVAGFSQSNVGDTSPNVLGAWCEDGSGQMCRYSDSTCGGKTEDCHGRGPFFREKDNG  357
               FVA F+QSN                                    GRGP F    +G
Sbjct  238  KGGFVAAFAQSN------------------------------------GRGPGF----DG  257

Query  358  AKSCFEIGRLQYAAAKQLYSQMDTSNTRITGNSNVRSFHAYRDLAGYTFQSPFNSSMLTT  417
             +S   IG  Q+ AAK+LY   D++ T ++G   V S H Y D++  T   P N + + T
Sbjct  258  FESTRIIGERQFQAAKELY---DSAGTPVSG--PVDSRHQYVDMSNVTVDLP-NGTTVRT  311

Query  418  CSAALGFSFAAGTTDGPGLFDFTQNSSGPAESNPLWYVARAFVHQ-PSAKQKACQAPKDI  476
            C AALG+SFAAGTTDGPG FDFTQ   G    NP W   R  +   PS +QKACQAPK I
Sbjct  312  CPAALGYSFAAGTTDGPGAFDFTQ---GDTTGNPFWDAVRGLLLAPPSQEQKACQAPKPI  368

Query  477  LLDVGANTQPYAWEPNIVDIQVLRVGQLFLIISTSEATTMAGRRWKEAIAKSAKDVLSID  536
            LLD G    PY W PNIVDIQ+LR+GQL +I    E TTMAGRR +EA+A +      + 
Sbjct  369  LLDTGEMNFPYPWTPNIVDIQILRIGQLVIIAVPGEFTTMAGRRLREAVAAALGSSGGLS  428

Query  537  SPLVVLGAPSNSYAHYVTTEEEYSRQRYEGASTLYGPHTLAAYIN  581
             P+VVL   +N+Y+HY+TT EEY  QRYEGASTLYGPHTL+AYI 
Sbjct  429  EPIVVLAGLANTYSHYITTPEEYQVQRYEGASTLYGPHTLSAYIQ  473


>CDD:465340 pfam17048, Ceramidse_alk_C, Neutral/alkaline non-lysosomal ceramidase, 
C-terminal.  This family represents C-terminal domain 
of a group of neutral/alkaline ceramidases found in both 
bacteria and eukaryotes. The EC classification is EC:3.5.1.23. 
The enzyme hydrolyzes ceramide to generate sphingosine and 
fatty acid. The enzyme plays a regulatory role in a variety 
of physiological events in eukaryotes and also functions 
as an exotoxin in particular bacteria. This C-terminal tail 
of the enzyme is highly conserved across all species and may 
play a role in the interaction of the enzyme with the plasma 
membranes. The tail is also vital for the stabilisation of 
the enzyme as a whole.
Length=165

 Score = 258 bits (662),  Expect = 1e-82, Method: Composition-based stats.
 Identities = 87/180 (48%), Positives = 107/180 (59%), Gaps = 16/180 (9%)

Query  583  TLTYLPYLGDSPNPATLPEMPTGVQPPINTDKSLSFIPGVVYDSAPIGKSFGDVVASVAK  642
             L   P L D     + P +P G  PP  T K LS +PGVV+D+ P+GKSFGDV+     
Sbjct  1    FLKLAPALADG----SPPPLPAGPTPPDLTSKQLSLLPGVVFDTPPLGKSFGDVLTDPNP  56

Query  643  STYKPGETVNTTFVGANPRNNLRQESTFAAVEWQNPASGRWEVVRTDNDWNLLYHWKRTN  702
            S Y+ G+TV+ TFVGANPRNNLR E TF AVE      G W  VR D DW+  +HWKRT+
Sbjct  57   S-YRRGDTVSVTFVGANPRNNLRLEGTFLAVERLVD-GGTWTTVRDDADWSTRFHWKRTS  114

Query  703  TILGYSEVTLEWQIEDDYYNTGNPKSLQAGTYRFHYYGDAKNIQ-GQIKSFEGIGKPFTV  761
             +LG SEVT+EW+I  D            GTYR  Y+GD+K++  G I  FEG    FTV
Sbjct  115  GLLGTSEVTIEWEIPADT---------PPGTYRIRYFGDSKSLLGGSITPFEGTSSSFTV  165



Lambda      K        H        a         alpha
   0.316    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 974951840


Query= TCONS_00001168

Length=606


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.116    0.310    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 768135992


Query= TCONS_00001169

Length=606


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.116    0.310    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 768135992


Query= TCONS_00007002

Length=388


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00007003

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.118    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00007005

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00001171

Length=822
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  141     3e-39
CDD:463421 pfam11987, IF-2, Translation-initiation factor 2. IF-2...  131     2e-36
CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The ...  59.6    2e-11
CDD:428110 pfam04760, IF2_N, Translation initiation factor IF-2, ...  57.1    4e-11


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 141 bits (359),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 59/180 (33%), Positives = 86/180 (48%), Gaps = 22/180 (12%)

Query  341  VTIMGHVDHGKTTILDWLRKSSVAASEHG-------------------GITQHIGAFSVA  381
            + I+GHVDHGKTT+ D L   + A S+ G                   GIT    A S  
Sbjct  6    IGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSAAVSFE  65

Query  382  MPSGKTITFLDTPGHAAFLDMRRRGANVTDIVVLVVAADDSVKPQTIEAIKHATESKVPI  441
                  I  +DTPGH  F+    RG    D  +LVV A + V PQT E ++ A +  VPI
Sbjct  66   -TKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVEGVMPQTREHLRLARQLGVPI  124

Query  442  IVAISKIDK-EGINPEKVKQDLSVHGVHVEDYGGD-VQAIGVSGKTGQGMLELEEAIVTL  499
            IV I+K+D+ +G   E+V +++S   +      G+ V  +  S   G+G+  L +A+   
Sbjct  125  IVFINKMDRVDGAELEEVVEEVSRELLEKYGEDGEFVPVVPGSALKGEGVQTLLDALDEY  184


>CDD:463421 pfam11987, IF-2, Translation-initiation factor 2.  IF-2 is a 
translation initiator in each of the three main phylogenetic 
domains (Eukaryotes, Bacteria and Archaea). IF2 interacts with 
formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal 
subunits. Through these interactions, IF2 promotes the binding 
of the initiator tRNA to the A site in the smaller ribosomal 
subunit and catalyzes the hydrolysis of GTP following initiation-complex 
formation.
Length=116

 Score = 131 bits (331),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 47/116 (41%), Positives = 68/116 (59%), Gaps = 0/116 (0%)

Query  628  QEKRRQEENEVAEALGDQDASGPKPVHFIIKADVGGSAEAVLNSVTAIGNNEVYANVLRS  687
            +E+   ++    E L  Q     K ++ IIKADV GS EA+  S+  + N+EV  N++ S
Sbjct  1    EEELAAKKKVSLEDLFSQIKEEVKELNLIIKADVQGSLEALKESLEKLSNDEVKVNIIHS  60

Query  688  EVGPISEFDIEHAATASGNIISFNMPIDPAMSRMAESRGVRIMDHNIIYKLIDDVK  743
             VG I+E D+  A+ ++  II FN+  D    ++AE  GV I  +NIIY LIDDVK
Sbjct  61   GVGAITESDVMLASASNAIIIGFNVRPDAKARKLAEKEGVDIRYYNIIYDLIDDVK  116


>CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase.  The full-length 
GTPase protein is required for the complete activity of 
the protein of interacting with the 50S ribosome and binding 
of both adenine and guanine nucleotides, with a preference 
for guanine nucleotide.
Length=113

 Score = 59.6 bits (145),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 17/118 (14%)

Query  341  VTIMGHVDHGKTTILDWLRKSSVAASEHGGITQHIGAFSVAMPSGKTITFLDTPGH----  396
            V ++G  + GK+T+++ L  +    S++ G T+           GK I  +DTPG     
Sbjct  2    VALVGRPNVGKSTLINALTGAKAIVSDYPGTTRDP-NEGRLELKGKQIILVDTPGLIEGA  60

Query  397  -------AAFLDMRRRGANVTDIVVLVVAADDSVKPQTIEAIKHATESKVPIIVAISK  447
                    AFL +        D+++ VV +++ + P   E ++   E+K PII+ ++K
Sbjct  61   SEGEGLGRAFLAIIE-----ADLILFVVDSEEGITPLDEELLELLRENKKPIILVLNK  113


>CDD:428110 pfam04760, IF2_N, Translation initiation factor IF-2, N-terminal 
region.  This conserved feature at the N-terminus of bacterial 
translation initiation factor IF2 has recently had its 
structure solved. It shows structural similarity to the tRNA 
anticodon Stem Contact Fold domains of the methionyl-tRNA 
and glutaminyl-tRNA synthetases, and a similar fold is also 
found in the B5 domain of the phenylalanine-tRNA synthetase.
Length=52

 Score = 57.1 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 18/53 (34%), Positives = 30/53 (57%), Gaps = 1/53 (2%)

Query  260  PEFISVSNLADVIGVRPAQFVRRMEEMGFEDVSYSHILDAETAGLIASEYNFE  312
             E I V  LA  +GV   + ++++ ++G    S++  LD ETA L+A E+  E
Sbjct  1    MEKIRVYELAKELGVSSKELIKKLFKLGIM-KSHNSTLDEETAELLAEEFGVE  52



Lambda      K        H        a         alpha
   0.313    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1043618678


Query= TCONS_00001170

Length=822
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  141     3e-39
CDD:463421 pfam11987, IF-2, Translation-initiation factor 2. IF-2...  131     2e-36
CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The ...  59.6    2e-11
CDD:428110 pfam04760, IF2_N, Translation initiation factor IF-2, ...  57.1    4e-11


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 141 bits (359),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 59/180 (33%), Positives = 86/180 (48%), Gaps = 22/180 (12%)

Query  341  VTIMGHVDHGKTTILDWLRKSSVAASEHG-------------------GITQHIGAFSVA  381
            + I+GHVDHGKTT+ D L   + A S+ G                   GIT    A S  
Sbjct  6    IGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSAAVSFE  65

Query  382  MPSGKTITFLDTPGHAAFLDMRRRGANVTDIVVLVVAADDSVKPQTIEAIKHATESKVPI  441
                  I  +DTPGH  F+    RG    D  +LVV A + V PQT E ++ A +  VPI
Sbjct  66   -TKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVEGVMPQTREHLRLARQLGVPI  124

Query  442  IVAISKIDK-EGINPEKVKQDLSVHGVHVEDYGGD-VQAIGVSGKTGQGMLELEEAIVTL  499
            IV I+K+D+ +G   E+V +++S   +      G+ V  +  S   G+G+  L +A+   
Sbjct  125  IVFINKMDRVDGAELEEVVEEVSRELLEKYGEDGEFVPVVPGSALKGEGVQTLLDALDEY  184


>CDD:463421 pfam11987, IF-2, Translation-initiation factor 2.  IF-2 is a 
translation initiator in each of the three main phylogenetic 
domains (Eukaryotes, Bacteria and Archaea). IF2 interacts with 
formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal 
subunits. Through these interactions, IF2 promotes the binding 
of the initiator tRNA to the A site in the smaller ribosomal 
subunit and catalyzes the hydrolysis of GTP following initiation-complex 
formation.
Length=116

 Score = 131 bits (331),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 47/116 (41%), Positives = 68/116 (59%), Gaps = 0/116 (0%)

Query  628  QEKRRQEENEVAEALGDQDASGPKPVHFIIKADVGGSAEAVLNSVTAIGNNEVYANVLRS  687
            +E+   ++    E L  Q     K ++ IIKADV GS EA+  S+  + N+EV  N++ S
Sbjct  1    EEELAAKKKVSLEDLFSQIKEEVKELNLIIKADVQGSLEALKESLEKLSNDEVKVNIIHS  60

Query  688  EVGPISEFDIEHAATASGNIISFNMPIDPAMSRMAESRGVRIMDHNIIYKLIDDVK  743
             VG I+E D+  A+ ++  II FN+  D    ++AE  GV I  +NIIY LIDDVK
Sbjct  61   GVGAITESDVMLASASNAIIIGFNVRPDAKARKLAEKEGVDIRYYNIIYDLIDDVK  116


>CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase.  The full-length 
GTPase protein is required for the complete activity of 
the protein of interacting with the 50S ribosome and binding 
of both adenine and guanine nucleotides, with a preference 
for guanine nucleotide.
Length=113

 Score = 59.6 bits (145),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 17/118 (14%)

Query  341  VTIMGHVDHGKTTILDWLRKSSVAASEHGGITQHIGAFSVAMPSGKTITFLDTPGH----  396
            V ++G  + GK+T+++ L  +    S++ G T+           GK I  +DTPG     
Sbjct  2    VALVGRPNVGKSTLINALTGAKAIVSDYPGTTRDP-NEGRLELKGKQIILVDTPGLIEGA  60

Query  397  -------AAFLDMRRRGANVTDIVVLVVAADDSVKPQTIEAIKHATESKVPIIVAISK  447
                    AFL +        D+++ VV +++ + P   E ++   E+K PII+ ++K
Sbjct  61   SEGEGLGRAFLAIIE-----ADLILFVVDSEEGITPLDEELLELLRENKKPIILVLNK  113


>CDD:428110 pfam04760, IF2_N, Translation initiation factor IF-2, N-terminal 
region.  This conserved feature at the N-terminus of bacterial 
translation initiation factor IF2 has recently had its 
structure solved. It shows structural similarity to the tRNA 
anticodon Stem Contact Fold domains of the methionyl-tRNA 
and glutaminyl-tRNA synthetases, and a similar fold is also 
found in the B5 domain of the phenylalanine-tRNA synthetase.
Length=52

 Score = 57.1 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 18/53 (34%), Positives = 30/53 (57%), Gaps = 1/53 (2%)

Query  260  PEFISVSNLADVIGVRPAQFVRRMEEMGFEDVSYSHILDAETAGLIASEYNFE  312
             E I V  LA  +GV   + ++++ ++G    S++  LD ETA L+A E+  E
Sbjct  1    MEKIRVYELAKELGVSSKELIKKLFKLGIM-KSHNSTLDEETAELLAEEFGVE  52



Lambda      K        H        a         alpha
   0.313    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1043618678


Query= TCONS_00001172

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00001174

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        92.7    3e-24


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 92.7 bits (231),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 35/93 (38%), Positives = 50/93 (54%), Gaps = 0/93 (0%)

Query  212  EEISSIKVATYGGLAGEVLWLSSYPFDVVKSKMQCDGFGAQQQYKSMTDCFKKTFATEGF  271
             E+S +     GG+AG +    +YP DVVK+++Q  G   + + + + DCFKK +  EG 
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGI  60

Query  272  GGFWKGLGPTLLRAMPVSAGTFAVVELAMRALG  304
             G +KGL P LLR  P +A  F   E   R L 
Sbjct  61   RGLYKGLLPNLLRVAPAAAIYFGTYETLKRLLL  93


 Score = 81.2 bits (201),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 32/90 (36%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query  112  TLSYGQYYLAGSFAGLTNSALSGPIEHVRIRLQTQPHGEARLYSGPLDCIRKLISQGGVL  171
             LS+    LAG  AG     ++ P++ V+ RLQ Q         G LDC +K+  + G+ 
Sbjct  2    ELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGI-  60

Query  172  RGLYRGQNVTYLREAQAYGTWFLTFEYLMN  201
            RGLY+G     LR A A   +F T+E L  
Sbjct  61   RGLYKGLLPNLLRVAPAAAIYFGTYETLKR  90


 Score = 67.7 bits (166),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 5/73 (7%)

Query  33  VLLGQPFDIVKVRLQT-----TSEYKSALDCATRIFKNEGPLAFYKGTLTPLIGIGACVR  87
           V +  P D+VK RLQ       S+ +  LDC  +I+K EG    YKG L  L+ +     
Sbjct  20  VTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAA  79

Query  88  LQFGAFHEARRRL  100
           + FG +   +R L
Sbjct  80  IYFGTYETLKRLL  92



Lambda      K        H        a         alpha
   0.321    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00001173

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        92.7    3e-24


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 92.7 bits (231),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 35/93 (38%), Positives = 50/93 (54%), Gaps = 0/93 (0%)

Query  212  EEISSIKVATYGGLAGEVLWLSSYPFDVVKSKMQCDGFGAQQQYKSMTDCFKKTFATEGF  271
             E+S +     GG+AG +    +YP DVVK+++Q  G   + + + + DCFKK +  EG 
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGI  60

Query  272  GGFWKGLGPTLLRAMPVSAGTFAVVELAMRALG  304
             G +KGL P LLR  P +A  F   E   R L 
Sbjct  61   RGLYKGLLPNLLRVAPAAAIYFGTYETLKRLLL  93


 Score = 81.2 bits (201),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 32/90 (36%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query  112  TLSYGQYYLAGSFAGLTNSALSGPIEHVRIRLQTQPHGEARLYSGPLDCIRKLISQGGVL  171
             LS+    LAG  AG     ++ P++ V+ RLQ Q         G LDC +K+  + G+ 
Sbjct  2    ELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGI-  60

Query  172  RGLYRGQNVTYLREAQAYGTWFLTFEYLMN  201
            RGLY+G     LR A A   +F T+E L  
Sbjct  61   RGLYKGLLPNLLRVAPAAAIYFGTYETLKR  90


 Score = 71.1 bits (175),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 37/73 (51%), Gaps = 5/73 (7%)

Query  33  VLLGQPFDIVKVRLQT-----TSEYKSALDCATRIFKNEGPLAFYKGTLTPLIGIGACVS  87
           V +  P D+VK RLQ       S+ +  LDC  +I+K EG    YKG L  L+ +    +
Sbjct  20  VTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAA  79

Query  88  VQFGAFHEARRRL  100
           + FG +   +R L
Sbjct  80  IYFGTYETLKRLL  92



Lambda      K        H        a         alpha
   0.320    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00007006

Length=105
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        91.2    4e-26


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 91.2 bits (227),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 35/93 (38%), Positives = 50/93 (54%), Gaps = 0/93 (0%)

Query  13   EEISSIKVATYGGLAGEVLWLSSYPFDVVKSKMQCDGFGAQQQYKSMTDCFKKTFATEGF  72
             E+S +     GG+AG +    +YP DVVK+++Q  G   + + + + DCFKK +  EG 
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGI  60

Query  73   GGFWKGLGPTLLRAMPVSAGTFAVVELAMRALG  105
             G +KGL P LLR  P +A  F   E   R L 
Sbjct  61   RGLYKGLLPNLLRVAPAAAIYFGTYETLKRLLL  93



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00001175

Length=105
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        91.2    4e-26


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 91.2 bits (227),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 35/93 (38%), Positives = 50/93 (54%), Gaps = 0/93 (0%)

Query  13   EEISSIKVATYGGLAGEVLWLSSYPFDVVKSKMQCDGFGAQQQYKSMTDCFKKTFATEGF  72
             E+S +     GG+AG +    +YP DVVK+++Q  G   + + + + DCFKK +  EG 
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGI  60

Query  73   GGFWKGLGPTLLRAMPVSAGTFAVVELAMRALG  105
             G +KGL P LLR  P +A  F   E   R L 
Sbjct  61   RGLYKGLLPNLLRVAPAAAIYFGTYETLKRLLL  93



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00001176

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        92.3    3e-24


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 92.3 bits (230),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 35/93 (38%), Positives = 50/93 (54%), Gaps = 0/93 (0%)

Query  208  EEISSIKVATYGGLAGEVLWLSSYPFDVVKSKMQCDGFGAQQQYKSMTDCFKKTFATEGF  267
             E+S +     GG+AG +    +YP DVVK+++Q  G   + + + + DCFKK +  EG 
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGI  60

Query  268  GGFWKGLGPTLLRAMPVSAGTFAVVELAMRALG  300
             G +KGL P LLR  P +A  F   E   R L 
Sbjct  61   RGLYKGLLPNLLRVAPAAAIYFGTYETLKRLLL  93


 Score = 81.2 bits (201),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 32/90 (36%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query  108  TLSYGQYYLAGSFAGLTNSALSGPIEHVRIRLQTQPHGEARLYSGPLDCIRKLISQGGVL  167
             LS+    LAG  AG     ++ P++ V+ RLQ Q         G LDC +K+  + G+ 
Sbjct  2    ELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGI-  60

Query  168  RGLYRGQNVTYLREAQAYGTWFLTFEYLMN  197
            RGLY+G     LR A A   +F T+E L  
Sbjct  61   RGLYKGLLPNLLRVAPAAAIYFGTYETLKR  90


 Score = 65.0 bits (159),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 24/67 (36%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query  35  LDIVKVRLQT-----TSEYKSALDCATRIFKNEGPLAFYKGTLTPLIGIGACVSVQFGAF  89
           LD+VK RLQ       S+ +  LDC  +I+K EG    YKG L  L+ +    ++ FG +
Sbjct  26  LDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTY  85

Query  90  HEARRRL  96
              +R L
Sbjct  86  ETLKRLL  92



Lambda      K        H        a         alpha
   0.320    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00001177

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00001179

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00001178

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family ...  213     7e-64
CDD:463987 pfam13802, Gal_mutarotas_2, Galactose mutarotase-like....  59.0    7e-12


>CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31.  Glycosyl 
hydrolases are key enzymes of carbohydrate metabolism. 
Family 31 comprises of enzymes that are, or similar to, alpha- 
galactosidases.
Length=443

 Score = 213 bits (545),  Expect = 7e-64, Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 141/308 (46%), Gaps = 46/308 (15%)

Query  234  YLIVGKTLKDTVRQYAELLGFPLLVPRWAYGYISGGYKYTMLDDPPAHQGLMEFADKLME  293
            Y  +G T KD V+QY EL G P L P WA GY    + Y   ++      ++E  D   E
Sbjct  1    YFFLGPTPKDVVKQYTELTGRPPLPPYWALGYHQSRWGYKSEEE------VLEVVDGFRE  54

Query  294  HGIPCSAHQMSSGYSIAETEPKVRNVFTWNKHRFPNPEEWIKKYHARGIRLLANIKPFVL  353
              IP     +   Y            FTW+  RFP+P+  + + HA+G +L+  I P + 
Sbjct  55   RDIPLDVIWLDIDYM------DGYRDFTWDPERFPDPKGMVDELHAKGQKLVVIIDPGIK  108

Query  354  A---THPDYQKLVSEGALFKKPDTQE-----PGTMRLWSAGGGTGGDGCHIDFTSSFAFR  405
                 +P Y + + +G   K PD        PG     SA           DFT+  A  
Sbjct  109  KVDPGYPPYDEGLEKGYFVKNPDGSLYVGGWPG----MSA---------FPDFTNPEARD  155

Query  406  WWYEGVQS-LKRAGIDGMWNDNNEYTLPDDEWQLALDGSGVTEQAKTQRDKSVGLWGRAM  464
            WW + +   L   G+DG+WND NE   P         GSG  +      D   G+    +
Sbjct  156  WWADQLFKFLLDMGVDGIWNDMNE---PSV-----FCGSGPEDTVAKDNDPGGGVEHYDV  207

Query  465  H---TELMGKASHDALVDMEPKYRPFVLTRSATAGTLRYAASSWSGDNMTSWESMKGANA  521
            H     LM KA+++ L +  P  RPFVLTRS  AG+ RYAA  WSGDN ++WE ++ +  
Sbjct  208  HNLYGLLMAKATYEGLREKRPNKRPFVLTRSGFAGSQRYAA-HWSGDNTSTWEHLRFSIP  266

Query  522  LSLNAGIS  529
              L+ G+S
Sbjct  267  GGLSLGLS  274


>CDD:463987 pfam13802, Gal_mutarotas_2, Galactose mutarotase-like.  This 
family is found N-terminal to glycosyl-hydrolase domains, and 
appears to be similar to the galactose mutarotase superfamily.
Length=67

 Score = 59.0 bits (144),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 22/53 (42%), Positives = 32/53 (60%), Gaps = 1/53 (2%)

Query  147  GLGEKRAPMDLTGRHFQLSATDSFGYDVYNTDPLYKHIPLLIKVTPAGCVAIF  199
            GLGE+  P++  G  ++L  TD+FGY++ +TDPLYK IP  I         +F
Sbjct  6    GLGERAGPLNKRGTRYRLWNTDAFGYEL-DTDPLYKSIPFYISHNGGRGYGVF  57



Lambda      K        H        a         alpha
   0.317    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690414096


Query= TCONS_00001180

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00001181

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00001187

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00001188

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00001182

Length=62
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464729 pfam15459, RRP14, 60S ribosome biogenesis protein Rrp1...  62.3    7e-16


>CDD:464729 pfam15459, RRP14, 60S ribosome biogenesis protein Rrp14.  RRP14 
is a family of nucleolar 60S ribosomal biogenesis proteins 
from eukaryotes. RRP14 functions in ribosome synthesis as 
it is required for the maturation of both small and large subunit 
rRNAs and it helps to prevent premature cleavage of the 
pre-rRNA at site C2. It also plays a role in cell polarity 
and/or spindle positioning.
Length=62

 Score = 62.3 bits (152),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 39/62 (63%), Gaps = 11/62 (18%)

Query  7   RLRSHAQAFDGLLSLIPAKYYYGEDGSDQ---------WKR--KKQTKEQAREAKRAKLD  55
           RL +H   FD LLSLIPAK+Y   D +D+          K+  KKQ KE +++AKRAKLD
Sbjct  1   RLEAHNDFFDSLLSLIPAKFYLPPDETDESNSKKYSKNKKKKAKKQAKEASKKAKRAKLD  60

Query  56  PD  57
           PD
Sbjct  61  PD  62



Lambda      K        H        a         alpha
   0.310    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00001183

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461491 pfam04935, SURF6, Surfeit locus protein 6. The surfeit...  140     2e-39
CDD:464729 pfam15459, RRP14, 60S ribosome biogenesis protein Rrp1...  61.1    1e-12


>CDD:461491 pfam04935, SURF6, Surfeit locus protein 6.  The surfeit locus 
protein SURF-6 is shown to be a component of the nucleolar 
matrix and has a strong binding capacity for nucleic acids.
Length=197

 Score = 140 bits (355),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 103/198 (52%), Positives = 134/198 (68%), Gaps = 6/198 (3%)

Query  304  QELIEARRQKAEQRKAHKKLLRQKAKEEEQRAKDEAMAKRFSPGGSGSLLASPRSPADSI  363
            +EL+E RR+K E+RKA KK  ++KAK+EE R ++EA A   S        ASP+SP    
Sbjct  1    EELLEERRKKKEERKAKKKERKEKAKKEEARKREEAEASEDSEAK-----ASPKSPPKGT  55

Query  364  GSNVNFSFGRVVFADGQVADPSLTNVREQPKRHG-PQDPATALKAAEAKKARLAEMDEEK  422
             ++ N  FG++ F DG      L+  ++  K+    +DP  ALK  EAKKA+L E+DEEK
Sbjct  56   EASGNLVFGKIDFDDGSQLTSDLSKKKKSKKKGPTGKDPKQALKKLEAKKAKLEELDEEK  115

Query  423  RADIEQKDMWLNAKKRAHGEKVRDDTSLLKKALKRKESAKKKSEREWKERLEAVKKGKDA  482
            R +IE+K+ WL A  RA GEKV+DD  LLKKALKRKE  KKKS++EWKER E V+K K A
Sbjct  116  RKEIEEKEKWLKALARAEGEKVKDDEKLLKKALKRKEKQKKKSKKEWKERKEGVEKSKAA  175

Query  483  RQQKREENLRKRREEKGN  500
            RQ+KREENL+KR+EEK  
Sbjct  176  RQKKREENLKKRKEEKKK  193


>CDD:464729 pfam15459, RRP14, 60S ribosome biogenesis protein Rrp14.  RRP14 
is a family of nucleolar 60S ribosomal biogenesis proteins 
from eukaryotes. RRP14 functions in ribosome synthesis as 
it is required for the maturation of both small and large subunit 
rRNAs and it helps to prevent premature cleavage of the 
pre-rRNA at site C2. It also plays a role in cell polarity 
and/or spindle positioning.
Length=62

 Score = 61.1 bits (149),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 39/62 (63%), Gaps = 11/62 (18%)

Query  7   RLRSHAQAFDGLLSLIPAKYYYGEDGSDQ---------WKR--KKQTKEQAREAKRAKLD  55
           RL +H   FD LLSLIPAK+Y   D +D+          K+  KKQ KE +++AKRAKLD
Sbjct  1   RLEAHNDFFDSLLSLIPAKFYLPPDETDESNSKKYSKNKKKKAKKQAKEASKKAKRAKLD  60

Query  56  PD  57
           PD
Sbjct  61  PD  62



Lambda      K        H        a         alpha
   0.301    0.120    0.317    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 661646842


Query= TCONS_00007007

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0571    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00001184

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00001185

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00007008

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00001189

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461491 pfam04935, SURF6, Surfeit locus protein 6. The surfeit...  111     1e-29
CDD:464729 pfam15459, RRP14, 60S ribosome biogenesis protein Rrp1...  59.6    3e-12


>CDD:461491 pfam04935, SURF6, Surfeit locus protein 6.  The surfeit locus 
protein SURF-6 is shown to be a component of the nucleolar 
matrix and has a strong binding capacity for nucleic acids.
Length=197

 Score = 111 bits (279),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 86/168 (51%), Positives = 110/168 (65%), Gaps = 6/168 (4%)

Query  164  RAKDEAMAKRFSPGGSGSLLASPRSPADSIGSNVNFSFGRVVFADGQVADPSLTNVREQP  223
            R ++EA A   S        ASP+SP     ++ N  FG++ F DG      L+  ++  
Sbjct  31   RKREEAEASEDSEAK-----ASPKSPPKGTEASGNLVFGKIDFDDGSQLTSDLSKKKKSK  85

Query  224  KRHG-PQDPATALKAAEAKKARLAEMDEEKRADIEQKDMWLNAKKRAHGEKVRDDTSLLK  282
            K+    +DP  ALK  EAKKA+L E+DEEKR +IE+K+ WL A  RA GEKV+DD  LLK
Sbjct  86   KKGPTGKDPKQALKKLEAKKAKLEELDEEKRKEIEEKEKWLKALARAEGEKVKDDEKLLK  145

Query  283  KALKRKESAKKKSEREWKERLEAVKKGKDARQQKREENLRKRREEKGN  330
            KALKRKE  KKKS++EWKER E V+K K ARQ+KREENL+KR+EEK  
Sbjct  146  KALKRKEKQKKKSKKEWKERKEGVEKSKAARQKKREENLKKRKEEKKK  193


>CDD:464729 pfam15459, RRP14, 60S ribosome biogenesis protein Rrp14.  RRP14 
is a family of nucleolar 60S ribosomal biogenesis proteins 
from eukaryotes. RRP14 functions in ribosome synthesis as 
it is required for the maturation of both small and large subunit 
rRNAs and it helps to prevent premature cleavage of the 
pre-rRNA at site C2. It also plays a role in cell polarity 
and/or spindle positioning.
Length=62

 Score = 59.6 bits (145),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 37/62 (60%), Gaps = 11/62 (18%)

Query  7   RLRSHAQAFDGLLSLIPAKYYYGEDG---------SVQWKR--KKQTKEQAREAKRAKLD  55
           RL +H   FD LLSLIPAK+Y   D          S   K+  KKQ KE +++AKRAKLD
Sbjct  1   RLEAHNDFFDSLLSLIPAKFYLPPDETDESNSKKYSKNKKKKAKKQAKEASKKAKRAKLD  60

Query  56  PD  57
           PD
Sbjct  61  PD  62



Lambda      K        H        a         alpha
   0.303    0.122    0.321    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00007009

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00007010

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00007011

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00001190

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461491 pfam04935, SURF6, Surfeit locus protein 6. The surfeit...  140     2e-39
CDD:464729 pfam15459, RRP14, 60S ribosome biogenesis protein Rrp1...  61.1    1e-12


>CDD:461491 pfam04935, SURF6, Surfeit locus protein 6.  The surfeit locus 
protein SURF-6 is shown to be a component of the nucleolar 
matrix and has a strong binding capacity for nucleic acids.
Length=197

 Score = 140 bits (355),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 103/198 (52%), Positives = 134/198 (68%), Gaps = 6/198 (3%)

Query  304  QELIEARRQKAEQRKAHKKLLRQKAKEEEQRAKDEAMAKRFSPGGSGSLLASPRSPADSI  363
            +EL+E RR+K E+RKA KK  ++KAK+EE R ++EA A   S        ASP+SP    
Sbjct  1    EELLEERRKKKEERKAKKKERKEKAKKEEARKREEAEASEDSEAK-----ASPKSPPKGT  55

Query  364  GSNVNFSFGRVVFADGQVADPSLTNVREQPKRHG-PQDPATALKAAEAKKARLAEMDEEK  422
             ++ N  FG++ F DG      L+  ++  K+    +DP  ALK  EAKKA+L E+DEEK
Sbjct  56   EASGNLVFGKIDFDDGSQLTSDLSKKKKSKKKGPTGKDPKQALKKLEAKKAKLEELDEEK  115

Query  423  RADIEQKDMWLNAKKRAHGEKVRDDTSLLKKALKRKESAKKKSEREWKERLEAVKKGKDA  482
            R +IE+K+ WL A  RA GEKV+DD  LLKKALKRKE  KKKS++EWKER E V+K K A
Sbjct  116  RKEIEEKEKWLKALARAEGEKVKDDEKLLKKALKRKEKQKKKSKKEWKERKEGVEKSKAA  175

Query  483  RQQKREENLRKRREEKGN  500
            RQ+KREENL+KR+EEK  
Sbjct  176  RQKKREENLKKRKEEKKK  193


>CDD:464729 pfam15459, RRP14, 60S ribosome biogenesis protein Rrp14.  RRP14 
is a family of nucleolar 60S ribosomal biogenesis proteins 
from eukaryotes. RRP14 functions in ribosome synthesis as 
it is required for the maturation of both small and large subunit 
rRNAs and it helps to prevent premature cleavage of the 
pre-rRNA at site C2. It also plays a role in cell polarity 
and/or spindle positioning.
Length=62

 Score = 61.1 bits (149),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 39/62 (63%), Gaps = 11/62 (18%)

Query  7   RLRSHAQAFDGLLSLIPAKYYYGEDGSDQ---------WKR--KKQTKEQAREAKRAKLD  55
           RL +H   FD LLSLIPAK+Y   D +D+          K+  KKQ KE +++AKRAKLD
Sbjct  1   RLEAHNDFFDSLLSLIPAKFYLPPDETDESNSKKYSKNKKKKAKKQAKEASKKAKRAKLD  60

Query  56  PD  57
           PD
Sbjct  61  PD  62



Lambda      K        H        a         alpha
   0.301    0.120    0.317    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 661646842


Query= TCONS_00007012

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00001194

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00007013

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00001191

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00001192

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00001193

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00001195

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428605 pfam05719, GPP34, Golgi phosphoprotein 3 (GPP34). This...  170     1e-52


>CDD:428605 pfam05719, GPP34, Golgi phosphoprotein 3 (GPP34).  This family 
consists of several eukaryotic GPP34 like proteins. GPP34 
localizes to the Golgi complex and is conserved from yeast to 
humans. The cytosolic-ally exposed location of GPP34 predict 
a role for a novel coat protein in Golgi trafficking.
Length=198

 Score = 170 bits (434),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 72/228 (32%), Positives = 103/228 (45%), Gaps = 41/228 (18%)

Query  77   LMEEVLLLGLKDKQGYLSFWNENISYALRGCIVIELALRGRISMQKDSSRRRFPLADRVI  136
            L EE+LLL L D+ G  S     +SYAL G +++ELAL GR+++  +  R         +
Sbjct  1    LAEELLLLALDDESGRPSLGARALSYALAGALLLELALAGRVAVDGEGGR---------V  51

Query  137  EVIDDTLTGEVLLDEALKMMKSSEK-MSVNSWIDLMSGETWNLMKIGYQLKQVRERLAKG  195
             V+D   TG+ LLDEAL ++K+ ++   V  W+  +S             + +RER+   
Sbjct  52   VVVDPRPTGDPLLDEALALLKAEKRPRKVKDWLRKLS-------------RGLRERVLAR  98

Query  196  LVDKGILRTEKRNFL-LFDMATHPVADGGAKDDLHRRVRNVCTSRTVILPANQWLPEDAE  254
            LV KG+LR E+R  L LF    +PV D  A+  L  R+R          P          
Sbjct  99   LVAKGVLRRERRRVLGLFPRTRYPVVDPAAEAALRARLRAALLGGEPPDP----------  148

Query  255  FRYLRTVVMICAAYAANVLENALVTMSHEARERAFAQVDELLAEYSQW  302
                RT  +     AA +L   L       R RA A+  ELL     W
Sbjct  149  ----RTAALAALLAAAGLLRKVL---PDLERRRARARAKELLEAQGDW  189



Lambda      K        H        a         alpha
   0.318    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00001196

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00007014

Length=416


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 507942834


Query= TCONS_00001197

Length=429


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 519925656


Query= TCONS_00007015

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00007016

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00007017

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00001199

Length=476


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00001200

Length=538


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 676787502


Query= TCONS_00001201

Length=429


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 519925656


Query= TCONS_00007018

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00001202

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00001203

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00007019

Length=538


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 676787502


Query= TCONS_00007021

Length=427


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00001204

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00001205

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00001206

Length=879


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1125442976


Query= TCONS_00007022

Length=326


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0902    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00001207

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00007023

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00001209

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461139 pfam04034, Ribo_biogen_C, Ribosome biogenesis protein,...  243     7e-82


>CDD:461139 pfam04034, Ribo_biogen_C, Ribosome biogenesis protein, C-terminal. 
 This family represents the C-terminal domain of some 
putative ribosome biogenesis proteins in archaea. It has also 
been identified in the eukaryotic protein Tsr3, which is involved 
in ribosomal RNA biogenesis.
Length=127

 Score = 243 bits (624),  Expect = 7e-82, Method: Composition-based stats.
 Identities = 71/127 (56%), Positives = 98/127 (77%), Gaps = 0/127 (0%)

Query  80   VVISPNAKKILSPADRELLEQFGAAVVECSWVRVKEVPWSRIGGRCERLLPYLIAANTVN  139
            +V+SP A+K+LSPADRE++E++G AVV+CSW R+ EVP+S+I G  ERLLPYL+AAN VN
Sbjct  1    IVLSPFAEKVLSPADREIVEKYGIAVVDCSWARLDEVPFSKIRGPNERLLPYLVAANPVN  60

Query  140  YGRPWRLNCVEALAACFCICGHEDWAREVLKHFNYGEAFLEINSALLKRYAACATEEDIK  199
            YG+P +L+CVEALAA   I G ++ A E+L  F +G  FLE+N  LL+RYAAC   E++ 
Sbjct  61   YGKPCKLSCVEALAAALYITGFKEEAEELLSKFKWGHTFLELNKELLERYAACKDSEEVV  120

Query  200  KAEEEWL  206
            + + E+L
Sbjct  121  EVQNEYL  127



Lambda      K        H        a         alpha
   0.314    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00001210

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430537 pfam09337, zf-H2C2, His(2)-Cys(2) zinc finger. This do...  60.8    3e-13


>CDD:430537 pfam09337, zf-H2C2, His(2)-Cys(2) zinc finger.  This domain binds 
to histone upstream activating sequence (UAS) elements 
that are found in histone gene promoters. Added to clan to resolve 
overlaps with pfam16721 but neither are classic zf_C2H2 
zinc-fingers.
Length=39

 Score = 60.8 bits (148),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 23/39 (59%), Positives = 26/39 (67%), Gaps = 0/39 (0%)

Query  22  HLKQHAGINKTTAAIAVKYHWVRIKETVSRVIRDCPQCK  60
           H   H GINK TA +A KYHW+ IKETVS VI  C  C+
Sbjct  1   HALTHLGINKLTALLARKYHWLGIKETVSEVISSCVACQ  39



Lambda      K        H        a         alpha
   0.315    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00001211

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430537 pfam09337, zf-H2C2, His(2)-Cys(2) zinc finger. This do...  60.8    3e-13


>CDD:430537 pfam09337, zf-H2C2, His(2)-Cys(2) zinc finger.  This domain binds 
to histone upstream activating sequence (UAS) elements 
that are found in histone gene promoters. Added to clan to resolve 
overlaps with pfam16721 but neither are classic zf_C2H2 
zinc-fingers.
Length=39

 Score = 60.8 bits (148),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 23/39 (59%), Positives = 26/39 (67%), Gaps = 0/39 (0%)

Query  22  HLKQHAGINKTTAAIAVKYHWVRIKETVSRVIRDCPQCK  60
           H   H GINK TA +A KYHW+ IKETVS VI  C  C+
Sbjct  1   HALTHLGINKLTALLARKYHWLGIKETVSEVISSCVACQ  39



Lambda      K        H        a         alpha
   0.315    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00007024

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430537 pfam09337, zf-H2C2, His(2)-Cys(2) zinc finger. This do...  60.8    3e-13


>CDD:430537 pfam09337, zf-H2C2, His(2)-Cys(2) zinc finger.  This domain binds 
to histone upstream activating sequence (UAS) elements 
that are found in histone gene promoters. Added to clan to resolve 
overlaps with pfam16721 but neither are classic zf_C2H2 
zinc-fingers.
Length=39

 Score = 60.8 bits (148),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 23/39 (59%), Positives = 26/39 (67%), Gaps = 0/39 (0%)

Query  22  HLKQHAGINKTTAAIAVKYHWVRIKETVSRVIRDCPQCK  60
           H   H GINK TA +A KYHW+ IKETVS VI  C  C+
Sbjct  1   HALTHLGINKLTALLARKYHWLGIKETVSEVISSCVACQ  39



Lambda      K        H        a         alpha
   0.315    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00007025

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398697 pfam05147, LANC_like, Lanthionine synthetase C-like pr...  97.1    7e-23


>CDD:398697 pfam05147, LANC_like, Lanthionine synthetase C-like protein. 
 Lanthionines are thioether bridges that are putatively generated 
by dehydration of Ser and Thr residues followed by addition 
of cysteine residues within the peptide. This family contains 
the lanthionine synthetase C-like proteins 1 and 2 which 
are related to the bacterial lanthionine synthetase components 
C (LanC). LANCL1 (P40 seven-transmembrane-domain protein) 
and LANCL2 (testes-specific adriamycin sensitivity protein) 
are thought to be peptide-modifying enzyme components 
in eukaryotic cells. Both proteins are produced in large quantities 
in the brain and testes and may have role in the immune 
surveillance of these organs. Lanthionines are found in 
lantibiotics, which are peptide-derived, post-translationally 
modified antimicrobials produced by several bacterial strains. 
This region contains seven internal repeats.
Length=350

 Score = 97.1 bits (242),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 76/346 (22%), Positives = 118/346 (34%), Gaps = 77/346 (22%)

Query  25   AKLGHAVSD--TDVDTLRDAVAIALKHGHVIPQADQYMGGDEFLYGRAGLLWSILNIRVL  82
            A      S    D   L + +  AL+    I          + + GRAG+L  +L +   
Sbjct  63   AYALAVASKLLGDYQLLLNYLDSALEL---IESNKLPDEKYDLISGRAGILSYLLLLN--  117

Query  83   SLDEKSTEALKPAFESVPHLIKVIIEAGRQGHRDYVQAYGNTDALPLMWTWKESRYGLGA  142
                         F      +K+I++      R  +++       PLM+    +   LG 
Sbjct  118  -----------EEFGIEEDYLKLILKYL---LRLGIRSENQFSWCPLMYEPYGNFN-LGF  162

Query  143  VHGMTGILAALLACKTEELNDGASHDYFPWIAETVLGLCRLCIANNGHLPTTIPPRQSTR  202
             HG++GI  ALLA      ++         I + +     L   + G+ P +        
Sbjct  163  AHGLSGIAYALLALYKGTKSEKLLEL----IKKALNYEKSLKFKSEGNWPDSRG-----D  213

Query  203  RASPLVQICHGSPAI---LLLLGCARRNRYLVSNFWQPEWDKAIFLATERVWEEGLLSKG  259
            +   LV  CHG+P I   LLL   A  +   +        ++AI    E VW+ GLL K 
Sbjct  214  KNDYLVAWCHGAPGILLALLLAYKALNDEEFL--------EEAIEAL-EVVWKRGLLLKN  264

Query  260  GSLCHGIAGNAWPLLLLHDSCEYDDELVETAKRNYGERAKNTTVEQPQPALTGDYFLSRA  319
             SLCHG++GN + LLLL+     D + +E AK+                           
Sbjct  265  PSLCHGLSGNLYILLLLYRLTN-DPKYLERAKKFIIS-----------------------  300

Query  320  LALLLHARETPPYNASPESSTYVYRMPDRPYSLSEGLAGTICAWAD  365
                                       D  + L EG+AG      D
Sbjct  301  -----LLDYGKKNGFKCGLPRG-----DESFGLMEGIAGIAYFLLD  336



Lambda      K        H        a         alpha
   0.320    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00001214

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398697 pfam05147, LANC_like, Lanthionine synthetase C-like pr...  101     5e-24


>CDD:398697 pfam05147, LANC_like, Lanthionine synthetase C-like protein. 
 Lanthionines are thioether bridges that are putatively generated 
by dehydration of Ser and Thr residues followed by addition 
of cysteine residues within the peptide. This family contains 
the lanthionine synthetase C-like proteins 1 and 2 which 
are related to the bacterial lanthionine synthetase components 
C (LanC). LANCL1 (P40 seven-transmembrane-domain protein) 
and LANCL2 (testes-specific adriamycin sensitivity protein) 
are thought to be peptide-modifying enzyme components 
in eukaryotic cells. Both proteins are produced in large quantities 
in the brain and testes and may have role in the immune 
surveillance of these organs. Lanthionines are found in 
lantibiotics, which are peptide-derived, post-translationally 
modified antimicrobials produced by several bacterial strains. 
This region contains seven internal repeats.
Length=350

 Score = 101 bits (254),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 94/423 (22%), Positives = 144/423 (34%), Gaps = 107/423 (25%)

Query  59   GVLGIALAFLRLDHQAASLTEEGETCSPDYRKLATE---RIPSHGPKTPLMPGRLSPLGS  115
            G+ GIAL  L L ++         T +  Y KLA +   +I             LS  G 
Sbjct  10   GLAGIALFLLEL-YKV--------TGNEKYLKLAHKYLEKIARA----------LSEKGL  50

Query  116  RSP-----LAATVMRVLAAAKLGHAVSDTDVDTLRDAVAIALKHGHVIPQADQYMGGDEF  170
                     A     +  A+KL       D   L + +  AL+    I          + 
Sbjct  51   PDISFFCGAAGIAYALAVASKLL-----GDYQLLLNYLDSALEL---IESNKLPDEKYDL  102

Query  171  LYGRAGLLWSILNIRVLSLDEKSTEALKPAFESVPHLIKVIIEAGRQGHRDYVQAYGNTD  230
            + GRAG+L  +L +                F      +K+I++      R  +++     
Sbjct  103  ISGRAGILSYLLLLN-------------EEFGIEEDYLKLILKYL---LRLGIRSENQFS  146

Query  231  ALPLMWTWKESRYGLGAVHGMTGILAALLACKTEELNDGASHDYFPWIAETVLGLCRLCI  290
              PLM+    +   LG  HG++GI  ALLA      ++         I + +     L  
Sbjct  147  WCPLMYEPYGNFN-LGFAHGLSGIAYALLALYKGTKSEKLLEL----IKKALNYEKSLKF  201

Query  291  ANNGHLPTTIPPRQSTRRASPLVQICHGSPAI---LLLLGCARRNRYLVSNFWQPEWDKA  347
             + G+ P +        +   LV  CHG+P I   LLL   A  +   +        ++A
Sbjct  202  KSEGNWPDSRG-----DKNDYLVAWCHGAPGILLALLLAYKALNDEEFL--------EEA  248

Query  348  IFLATERVWEEGLLSKGGSLCHGIAGNAWPLLLLHDSCEYDDELVETAKRNYGERAKNTT  407
            I    E VW+ GLL K  SLCHG++GN + LLLL+     D + +E AK+          
Sbjct  249  IEAL-EVVWKRGLLLKNPSLCHGLSGNLYILLLLYRLTN-DPKYLERAKKFIIS------  300

Query  408  VEQPQPALTGDYFLSRALALLLHARETPPYNASPESSTYVYRMPDRPYSLSEGLAGTICA  467
                                                        D  + L EG+AG    
Sbjct  301  ----------------------LLDYGKKNGFKCGLPRG-----DESFGLMEGIAGIAYF  333

Query  468  WAD  470
              D
Sbjct  334  LLD  336



Lambda      K        H        a         alpha
   0.319    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00001212

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398697 pfam05147, LANC_like, Lanthionine synthetase C-like pr...  101     5e-24


>CDD:398697 pfam05147, LANC_like, Lanthionine synthetase C-like protein. 
 Lanthionines are thioether bridges that are putatively generated 
by dehydration of Ser and Thr residues followed by addition 
of cysteine residues within the peptide. This family contains 
the lanthionine synthetase C-like proteins 1 and 2 which 
are related to the bacterial lanthionine synthetase components 
C (LanC). LANCL1 (P40 seven-transmembrane-domain protein) 
and LANCL2 (testes-specific adriamycin sensitivity protein) 
are thought to be peptide-modifying enzyme components 
in eukaryotic cells. Both proteins are produced in large quantities 
in the brain and testes and may have role in the immune 
surveillance of these organs. Lanthionines are found in 
lantibiotics, which are peptide-derived, post-translationally 
modified antimicrobials produced by several bacterial strains. 
This region contains seven internal repeats.
Length=350

 Score = 101 bits (254),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 94/423 (22%), Positives = 144/423 (34%), Gaps = 107/423 (25%)

Query  59   GVLGIALAFLRLDHQAASLTEEGETCSPDYRKLATE---RIPSHGPKTPLMPGRLSPLGS  115
            G+ GIAL  L L ++         T +  Y KLA +   +I             LS  G 
Sbjct  10   GLAGIALFLLEL-YKV--------TGNEKYLKLAHKYLEKIARA----------LSEKGL  50

Query  116  RSP-----LAATVMRVLAAAKLGHAVSDTDVDTLRDAVAIALKHGHVIPQADQYMGGDEF  170
                     A     +  A+KL       D   L + +  AL+    I          + 
Sbjct  51   PDISFFCGAAGIAYALAVASKLL-----GDYQLLLNYLDSALEL---IESNKLPDEKYDL  102

Query  171  LYGRAGLLWSILNIRVLSLDEKSTEALKPAFESVPHLIKVIIEAGRQGHRDYVQAYGNTD  230
            + GRAG+L  +L +                F      +K+I++      R  +++     
Sbjct  103  ISGRAGILSYLLLLN-------------EEFGIEEDYLKLILKYL---LRLGIRSENQFS  146

Query  231  ALPLMWTWKESRYGLGAVHGMTGILAALLACKTEELNDGASHDYFPWIAETVLGLCRLCI  290
              PLM+    +   LG  HG++GI  ALLA      ++         I + +     L  
Sbjct  147  WCPLMYEPYGNFN-LGFAHGLSGIAYALLALYKGTKSEKLLEL----IKKALNYEKSLKF  201

Query  291  ANNGHLPTTIPPRQSTRRASPLVQICHGSPAI---LLLLGCARRNRYLVSNFWQPEWDKA  347
             + G+ P +        +   LV  CHG+P I   LLL   A  +   +        ++A
Sbjct  202  KSEGNWPDSRG-----DKNDYLVAWCHGAPGILLALLLAYKALNDEEFL--------EEA  248

Query  348  IFLATERVWEEGLLSKGGSLCHGIAGNAWPLLLLHDSCEYDDELVETAKRNYGERAKNTT  407
            I    E VW+ GLL K  SLCHG++GN + LLLL+     D + +E AK+          
Sbjct  249  IEAL-EVVWKRGLLLKNPSLCHGLSGNLYILLLLYRLTN-DPKYLERAKKFIIS------  300

Query  408  VEQPQPALTGDYFLSRALALLLHARETPPYNASPESSTYVYRMPDRPYSLSEGLAGTICA  467
                                                        D  + L EG+AG    
Sbjct  301  ----------------------LLDYGKKNGFKCGLPRG-----DESFGLMEGIAGIAYF  333

Query  468  WAD  470
              D
Sbjct  334  LLD  336



Lambda      K        H        a         alpha
   0.319    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00007026

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398697 pfam05147, LANC_like, Lanthionine synthetase C-like pr...  68.9    7e-14


>CDD:398697 pfam05147, LANC_like, Lanthionine synthetase C-like protein. 
 Lanthionines are thioether bridges that are putatively generated 
by dehydration of Ser and Thr residues followed by addition 
of cysteine residues within the peptide. This family contains 
the lanthionine synthetase C-like proteins 1 and 2 which 
are related to the bacterial lanthionine synthetase components 
C (LanC). LANCL1 (P40 seven-transmembrane-domain protein) 
and LANCL2 (testes-specific adriamycin sensitivity protein) 
are thought to be peptide-modifying enzyme components 
in eukaryotic cells. Both proteins are produced in large quantities 
in the brain and testes and may have role in the immune 
surveillance of these organs. Lanthionines are found in 
lantibiotics, which are peptide-derived, post-translationally 
modified antimicrobials produced by several bacterial strains. 
This region contains seven internal repeats.
Length=350

 Score = 68.9 bits (169),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 79/225 (35%), Gaps = 55/225 (24%)

Query  30   HGMTGILAALLACKTEELNDGASHDYFPWIAETVLGLCRLCIANNGHLPTTIPPRQSTRR  89
            HG++GI  ALLA      ++         I + +     L   + G+ P +        +
Sbjct  164  HGLSGIAYALLALYKGTKSEKLLEL----IKKALNYEKSLKFKSEGNWPDSRG-----DK  214

Query  90   ASPLVQICHGSPAI---LLLLGCARRNRYLVSNFWQPEWDKAIFLATERVWEEGLLSKGG  146
               LV  CHG+P I   LLL   A  +   +        ++AI    E VW+ GLL K  
Sbjct  215  NDYLVAWCHGAPGILLALLLAYKALNDEEFL--------EEAIEAL-EVVWKRGLLLKNP  265

Query  147  SLCHGIAGNAWPLLLLHDSCEYDDELVETAKRNYGERAKNTTVEQPQPALTGDYFLSRAL  206
            SLCHG++GN + LLLL+     D + +E AK+                            
Sbjct  266  SLCHGLSGNLYILLLLYRLTN-DPKYLERAKKFIIS------------------------  300

Query  207  ALLLHARETPPYNASPESSTYVYRMPDRPYSLSEGLAGTICAWAD  251
                                      D  + L EG+AG      D
Sbjct  301  ----LLDYGKKNGFKCGLPRG-----DESFGLMEGIAGIAYFLLD  336



Lambda      K        H        a         alpha
   0.321    0.136    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00007027

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398697 pfam05147, LANC_like, Lanthionine synthetase C-like pr...  97.1    7e-23


>CDD:398697 pfam05147, LANC_like, Lanthionine synthetase C-like protein. 
 Lanthionines are thioether bridges that are putatively generated 
by dehydration of Ser and Thr residues followed by addition 
of cysteine residues within the peptide. This family contains 
the lanthionine synthetase C-like proteins 1 and 2 which 
are related to the bacterial lanthionine synthetase components 
C (LanC). LANCL1 (P40 seven-transmembrane-domain protein) 
and LANCL2 (testes-specific adriamycin sensitivity protein) 
are thought to be peptide-modifying enzyme components 
in eukaryotic cells. Both proteins are produced in large quantities 
in the brain and testes and may have role in the immune 
surveillance of these organs. Lanthionines are found in 
lantibiotics, which are peptide-derived, post-translationally 
modified antimicrobials produced by several bacterial strains. 
This region contains seven internal repeats.
Length=350

 Score = 97.1 bits (242),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 76/346 (22%), Positives = 118/346 (34%), Gaps = 77/346 (22%)

Query  25   AKLGHAVSD--TDVDTLRDAVAIALKHGHVIPQADQYMGGDEFLYGRAGLLWSILNIRVL  82
            A      S    D   L + +  AL+    I          + + GRAG+L  +L +   
Sbjct  63   AYALAVASKLLGDYQLLLNYLDSALEL---IESNKLPDEKYDLISGRAGILSYLLLLN--  117

Query  83   SLDEKSTEALKPAFESVPHLIKVIIEAGRQGHRDYVQAYGNTDALPLMWTWKESRYGLGA  142
                         F      +K+I++      R  +++       PLM+    +   LG 
Sbjct  118  -----------EEFGIEEDYLKLILKYL---LRLGIRSENQFSWCPLMYEPYGNFN-LGF  162

Query  143  VHGMTGILAALLACKTEELNDGASHDYFPWIAETVLGLCRLCIANNGHLPTTIPPRQSTR  202
             HG++GI  ALLA      ++         I + +     L   + G+ P +        
Sbjct  163  AHGLSGIAYALLALYKGTKSEKLLEL----IKKALNYEKSLKFKSEGNWPDSRG-----D  213

Query  203  RASPLVQICHGSPAI---LLLLGCARRNRYLVSNFWQPEWDKAIFLATERVWEEGLLSKG  259
            +   LV  CHG+P I   LLL   A  +   +        ++AI    E VW+ GLL K 
Sbjct  214  KNDYLVAWCHGAPGILLALLLAYKALNDEEFL--------EEAIEAL-EVVWKRGLLLKN  264

Query  260  GSLCHGIAGNAWPLLLLHDSCEYDDELVETAKRNYGERAKNTTVEQPQPALTGDYFLSRA  319
             SLCHG++GN + LLLL+     D + +E AK+                           
Sbjct  265  PSLCHGLSGNLYILLLLYRLTN-DPKYLERAKKFIIS-----------------------  300

Query  320  LALLLHARETPPYNASPESSTYVYRMPDRPYSLSEGLAGTICAWAD  365
                                       D  + L EG+AG      D
Sbjct  301  -----LLDYGKKNGFKCGLPRG-----DESFGLMEGIAGIAYFLLD  336



Lambda      K        H        a         alpha
   0.320    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00007028

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00001216

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398697 pfam05147, LANC_like, Lanthionine synthetase C-like pr...  63.2    5e-12


>CDD:398697 pfam05147, LANC_like, Lanthionine synthetase C-like protein. 
 Lanthionines are thioether bridges that are putatively generated 
by dehydration of Ser and Thr residues followed by addition 
of cysteine residues within the peptide. This family contains 
the lanthionine synthetase C-like proteins 1 and 2 which 
are related to the bacterial lanthionine synthetase components 
C (LanC). LANCL1 (P40 seven-transmembrane-domain protein) 
and LANCL2 (testes-specific adriamycin sensitivity protein) 
are thought to be peptide-modifying enzyme components 
in eukaryotic cells. Both proteins are produced in large quantities 
in the brain and testes and may have role in the immune 
surveillance of these organs. Lanthionines are found in 
lantibiotics, which are peptide-derived, post-translationally 
modified antimicrobials produced by several bacterial strains. 
This region contains seven internal repeats.
Length=350

 Score = 63.2 bits (154),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 53/223 (24%), Positives = 77/223 (35%), Gaps = 55/223 (25%)

Query  1    MSGILAALLACKTEELNDGASHDYFPWIAETVLGLCRLCIANNGHLPTTIPPRQSTRRAS  60
            +SGI  ALLA      ++         I + +     L   + G+ P +        +  
Sbjct  166  LSGIAYALLALYKGTKSEKLLEL----IKKALNYEKSLKFKSEGNWPDSRG-----DKND  216

Query  61   PLVQICHGSPAI---LLLLGCARRNRYLVSNFWQPEWDKAIFLATERVWEEGLLSKGGSL  117
             LV  CHG+P I   LLL   A  +   +        ++AI    E VW+ GLL K  SL
Sbjct  217  YLVAWCHGAPGILLALLLAYKALNDEEFL--------EEAIEAL-EVVWKRGLLLKNPSL  267

Query  118  CHGIAGNAWPLLLLHDSCEYDDELVETAKRNYGERAKNTTVEQPQPALTGDYFLSRALAL  177
            CHG++GN + LLLL+     D + +E AK+                              
Sbjct  268  CHGLSGNLYILLLLYRLTN-DPKYLERAKKFIIS--------------------------  300

Query  178  LLHARETPPYNASPESSTYVYRMPDRPYSLSEGLAGTICAWAD  220
                                    D  + L EG+AG      D
Sbjct  301  --LLDYGKKNGFKCGLPRG-----DESFGLMEGIAGIAYFLLD  336



Lambda      K        H        a         alpha
   0.320    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00001217

Length=272


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00007029

Length=811


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1043343984


Query= TCONS_00007031

Length=832


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1057973818


Query= TCONS_00007032

Length=920


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00007033

Length=430
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425756 pfam00571, CBS, CBS domain. CBS domains are small intr...  56.8    2e-11


>CDD:425756 pfam00571, CBS, CBS domain.  CBS domains are small intracellular 
modules that pair together to form a stable globular domain. 
This family represents a single CBS domain. Pairs of these 
domains have been termed a Bateman domain. CBS domains have 
been shown to bind ligands with an adenosyl group such as 
AMP, ATP and S-AdoMet. CBS domains are found attached to a 
wide range of other protein domains suggesting that CBS domains 
may play a regulatory role making proteins sensitive to 
adenosyl carrying ligands. The region containing the CBS domains 
in Cystathionine-beta synthase is involved in regulation 
by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. 
The CBS domains from IMPDH and the chloride channel CLC2 bind 
ATP.
Length=57

 Score = 56.8 bits (138),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 19/49 (39%), Positives = 30/49 (61%), Gaps = 0/49 (0%)

Query  168  VAEIMTKNPLCARTDTSATDALDLMVRKGFRHLPVMDENQDISGILDIT  216
            V +IMTK+ +    DT+  +AL+LM   G   LPV+DE+  + GI+ + 
Sbjct  1    VKDIMTKDVVTVSPDTTLEEALELMREHGISRLPVVDEDGKLVGIVTLK  49



Lambda      K        H        a         alpha
   0.315    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521459360


Query= TCONS_00001220

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425756 pfam00571, CBS, CBS domain. CBS domains are small intr...  56.8    2e-11


>CDD:425756 pfam00571, CBS, CBS domain.  CBS domains are small intracellular 
modules that pair together to form a stable globular domain. 
This family represents a single CBS domain. Pairs of these 
domains have been termed a Bateman domain. CBS domains have 
been shown to bind ligands with an adenosyl group such as 
AMP, ATP and S-AdoMet. CBS domains are found attached to a 
wide range of other protein domains suggesting that CBS domains 
may play a regulatory role making proteins sensitive to 
adenosyl carrying ligands. The region containing the CBS domains 
in Cystathionine-beta synthase is involved in regulation 
by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. 
The CBS domains from IMPDH and the chloride channel CLC2 bind 
ATP.
Length=57

 Score = 56.8 bits (138),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 19/49 (39%), Positives = 30/49 (61%), Gaps = 0/49 (0%)

Query  168  VAEIMTKNPLCARTDTSATDALDLMVRKGFRHLPVMDENQDISGILDIT  216
            V +IMTK+ +    DT+  +AL+LM   G   LPV+DE+  + GI+ + 
Sbjct  1    VKDIMTKDVVTVSPDTTLEEALELMREHGISRLPVVDEDGKLVGIVTLK  49



Lambda      K        H        a         alpha
   0.315    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00001221

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425756 pfam00571, CBS, CBS domain. CBS domains are small intr...  55.3    6e-11
CDD:459826 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase do...  60.1    8e-11


>CDD:425756 pfam00571, CBS, CBS domain.  CBS domains are small intracellular 
modules that pair together to form a stable globular domain. 
This family represents a single CBS domain. Pairs of these 
domains have been termed a Bateman domain. CBS domains have 
been shown to bind ligands with an adenosyl group such as 
AMP, ATP and S-AdoMet. CBS domains are found attached to a 
wide range of other protein domains suggesting that CBS domains 
may play a regulatory role making proteins sensitive to 
adenosyl carrying ligands. The region containing the CBS domains 
in Cystathionine-beta synthase is involved in regulation 
by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. 
The CBS domains from IMPDH and the chloride channel CLC2 bind 
ATP.
Length=57

 Score = 55.3 bits (134),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 19/49 (39%), Positives = 30/49 (61%), Gaps = 0/49 (0%)

Query  92   VAEIMTKNPLCARTDTSATDALDLMVRKGFRHLPVMDENQDISGILDIT  140
            V +IMTK+ +    DT+  +AL+LM   G   LPV+DE+  + GI+ + 
Sbjct  1    VKDIMTKDVVTVSPDTTLEEALELMREHGISRLPVVDEDGKLVGIVTLK  49


>CDD:459826 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain.  
This family is involved in biosynthesis of guanosine nucleotide. 
Members of this family contain a TIM barrel structure. 
In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 
are inserted in the TIM barrel. This family is a member 
of the common phosphate binding site TIM barrel family.
Length=463

 Score = 60.1 bits (147),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 54/109 (50%), Gaps = 11/109 (10%)

Query  37   IKPNTTVAEAAQMMAAKREDCVLVTDDDDRIAGIFTAKDLAFRVVGNGQKAREITVAEIM  96
            + P+ TVA+A  +M       V V  DD ++ GI T +DL F      +      V+E+M
Sbjct  93   LSPDATVADALALMERYGISGVPVV-DDGKLVGIVTNRDLRF------ETDLSQPVSEVM  145

Query  97   TKNPL-CARTDTSATDALDLMVRKGFRHLPVMDENQDISG---ILDITK  141
            TK  L  A   T+  +A +++ +     LPV+D+N  + G   I DI K
Sbjct  146  TKENLVTAPEGTTLEEAKEILHKHKIEKLPVVDDNGRLVGLITIKDIEK  194



Lambda      K        H        a         alpha
   0.318    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00001222

Length=661
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425756 pfam00571, CBS, CBS domain. CBS domains are small intr...  56.8    4e-11


>CDD:425756 pfam00571, CBS, CBS domain.  CBS domains are small intracellular 
modules that pair together to form a stable globular domain. 
This family represents a single CBS domain. Pairs of these 
domains have been termed a Bateman domain. CBS domains have 
been shown to bind ligands with an adenosyl group such as 
AMP, ATP and S-AdoMet. CBS domains are found attached to a 
wide range of other protein domains suggesting that CBS domains 
may play a regulatory role making proteins sensitive to 
adenosyl carrying ligands. The region containing the CBS domains 
in Cystathionine-beta synthase is involved in regulation 
by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. 
The CBS domains from IMPDH and the chloride channel CLC2 bind 
ATP.
Length=57

 Score = 56.8 bits (138),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 19/49 (39%), Positives = 30/49 (61%), Gaps = 0/49 (0%)

Query  168  VAEIMTKNPLCARTDTSATDALDLMVRKGFRHLPVMDENQDISGILDIT  216
            V +IMTK+ +    DT+  +AL+LM   G   LPV+DE+  + GI+ + 
Sbjct  1    VKDIMTKDVVTVSPDTTLEEALELMREHGISRLPVVDEDGKLVGIVTLK  49



Lambda      K        H        a         alpha
   0.314    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 837680720


Query= TCONS_00001223

Length=759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459764 pfam00330, Aconitase, Aconitase family (aconitate hydr...  548     0.0  
CDD:459908 pfam00694, Aconitase_C, Aconitase C-terminal domain. M...  161     6e-47


>CDD:459764 pfam00330, Aconitase, Aconitase family (aconitate hydratase). 
 
Length=460

 Score = 548 bits (1416),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/486 (38%), Positives = 243/486 (50%), Gaps = 61/486 (13%)

Query  28   EKILYAHLDNAEESLLTGTNNGKDIRGKANLKLKPDRVAMQDASAQMALLQFMSCGLP--  85
            EKI  AHL    +                +L   PDRV M D ++  A +   + G    
Sbjct  1    EKIWDAHLVEELDG---------------SLLYIPDRVLMHDVTSPQAFVDLRAAGRAVR  45

Query  86   ---------STAVPASIHCDHMIVGERGADTDLPASIEGNREVFDFLESAAKRYGIEFWP  136
                        VP  +  DH        D ++   I  N+E +DFLE  AK++GI F P
Sbjct  46   RPGGTPATIDHLVPTDLVIDH---APDALDKNIEDEISRNKEQYDFLEWNAKKFGIRFVP  102

Query  137  PGAGIIHQSVLEN-YAAPGLMMLGTDSHTPNAGGLGAIAIGVGGADAVDALVDAPWELKA  195
            PG GI+HQ  LE   A PG+ ++GTDSHT   GGLGA+A GVGG++A   L   P E+K 
Sbjct  103  PGQGIVHQVGLEYGLALPGMTIVGTDSHTTTHGGLGALAFGVGGSEAEHVLATQPLEMKK  162

Query  196  PRILGVRLEGRLSGWASPKDIILHLAGKLTVRGGTGYVIEYHGPGVETLSCTGMATCCNM  255
            P+++GV+L G+L    + KD+IL + GKL V+GGTG V+E+ GPGV +LS  G AT CNM
Sbjct  163  PKVVGVKLTGKLPPGVTAKDVILAIIGKLGVKGGTGKVVEFFGPGVRSLSMEGRATICNM  222

Query  256  GAEVGATTSVFPFSPSMVPYLQATHRGHVAQAAAEIAASGPKNLLRADDGAEYDQLITID  315
              E GAT  +FP   +   YL+AT R    +  A   A   K  L +D GAEYD+++ ID
Sbjct  223  AIEYGATAGLFPPDETTFEYLRATGRPEAPKGEAYDKAVAWKT-LASDPGAEYDKVVEID  281

Query  316  LSTLEPHVNGPFTPDLSVRLSD-----FANTVR-------------ENKWPETLGA---G  354
            LST+EP V GP  P  +V LS+     FA+ V+                 P + G     
Sbjct  282  LSTIEPMVTGPTRPQDAVPLSELVPDPFADAVKRKAAERALEYMGLGPGTPLSDGKVDIA  341

Query  355  LIGSCTNSSYEDMTRAEDLVKQASAAGLKPKAD--FFITPGSEQIRATLDRDQTLASFSE  412
             IGSCTNSS ED+  A  L+K+A   GLK        + PGSE +RA  + +       E
Sbjct  342  FIGSCTNSSIEDLRAAAGLLKKAVEKGLKVAPGVKASVVPGSEVVRAYAEAEGLDKILEE  401

Query  413  AGGTVLANACGPCIGQWKRTDGVAKGEDNAIFTSYNRNFPGRNDGNRRTMNFLASPEIVT  472
            AG       C  CIG   R   +  GE     +S NRNF GR          LASP +V 
Sbjct  402  AGFEWRGPGCSMCIGNSDR---LPPGE--RCVSSSNRNFEGRQ--GPGGRTHLASPALVA  454

Query  473  ALAYSG  478
            A A +G
Sbjct  455  AAAIAG  460


>CDD:459908 pfam00694, Aconitase_C, Aconitase C-terminal domain.  Members 
of this family usually also match to pfam00330. This domain 
undergoes conformational change in the enzyme mechanism.
Length=131

 Score = 161 bits (409),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 62/130 (48%), Gaps = 1/130 (1%)

Query  558  LKVLYKVKGQCTTDTISAAGPWLKYKGHLPNISANTLIGAVNAATGETNVAYD-DAGNKH  616
            + V  K+KG+ T D  S     L          AN  IG +N              G   
Sbjct  1    MPVFLKLKGKTTPDFNSNVDTDLIIPKQFLGTIANIGIGNINFEGWRYGKVRYLPDGENP  60

Query  617  SIPDLAARWKADGIEWLVVAEDNYGEGSAREHAALQPRYLGGRIIVAKSFARIHETNLKK  676
               D A R+K  G   +V+   N+G GS+REHAA   R LG + ++A+SFARIH  NL K
Sbjct  61   DFYDAAMRYKQHGAPIVVIGGKNFGCGSSREHAAWALRDLGIKAVIAESFARIHRNNLIK  120

Query  677  QGVVPLTFAD  686
             G++PL F +
Sbjct  121  NGLLPLEFPE  130



Lambda      K        H        a         alpha
   0.315    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 967676080


Query= TCONS_00001224

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425756 pfam00571, CBS, CBS domain. CBS domains are small intr...  56.8    2e-11


>CDD:425756 pfam00571, CBS, CBS domain.  CBS domains are small intracellular 
modules that pair together to form a stable globular domain. 
This family represents a single CBS domain. Pairs of these 
domains have been termed a Bateman domain. CBS domains have 
been shown to bind ligands with an adenosyl group such as 
AMP, ATP and S-AdoMet. CBS domains are found attached to a 
wide range of other protein domains suggesting that CBS domains 
may play a regulatory role making proteins sensitive to 
adenosyl carrying ligands. The region containing the CBS domains 
in Cystathionine-beta synthase is involved in regulation 
by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. 
The CBS domains from IMPDH and the chloride channel CLC2 bind 
ATP.
Length=57

 Score = 56.8 bits (138),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 19/49 (39%), Positives = 30/49 (61%), Gaps = 0/49 (0%)

Query  168  VAEIMTKNPLCARTDTSATDALDLMVRKGFRHLPVMDENQDISGILDIT  216
            V +IMTK+ +    DT+  +AL+LM   G   LPV+DE+  + GI+ + 
Sbjct  1    VKDIMTKDVVTVSPDTTLEEALELMREHGISRLPVVDEDGKLVGIVTLK  49



Lambda      K        H        a         alpha
   0.315    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00007035

Length=1095
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465881 pfam18829, Importin_rep_6, Importin repeat 6. The impo...  164     3e-48
CDD:408579 pfam18808, Importin_rep_4, Importin repeat. The import...  130     3e-36
CDD:465877 pfam18816, Importin_rep_5, Importin repeat. The import...  100     3e-26
CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat ...  56.6    7e-11


>CDD:465881 pfam18829, Importin_rep_6, Importin repeat 6.  The importin subunit 
beta-3 has a superhelical structure composed of tandem 
repeats structurally similar to HEAT repeats. This Pfam entry 
represents two consecutive repeat units and includes sequences 
captured by pfam18808.
Length=110

 Score = 164 bits (419),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 51/110 (46%), Positives = 67/110 (61%), Gaps = 0/110 (0%)

Query  770  TLAEMYQCFYESVEVVGKNCLSPQHMEAFIESAKSTLEDYQVRVKARLEERADAEEGDEE  829
             LAE Y    E +EV+G NCLS + ME FI++  S L +Y  RVK R EER D +  +E 
Sbjct  1    VLAEYYSSLAECIEVLGPNCLSDEQMEEFIKAINSNLTEYFERVKEREEERKDDDYDEEV  60

Query  830  DLDYEYAVEDDQNLLSDMNKAFHTIFKNQGTTFLPSWQRLLPFYDAFITS  879
            + D E   E D+ LLS++NKA H IFK   T FLP +++LLP   AF+  
Sbjct  61   EEDLEEEEETDEELLSEINKAIHAIFKTHKTAFLPYFEQLLPTVVAFLND  110


>CDD:408579 pfam18808, Importin_rep_4, Importin repeat.  The importin subunit 
beta-3 has a superhelical structure composed of tandem 
repeats structurally similar to HEAT repeats. This Pfam entry 
includes a single repeat unit.
Length=90

 Score = 130 bits (328),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 47/94 (50%), Positives = 67/94 (71%), Gaps = 4/94 (4%)

Query  276  DKDLSDQVRQNALELMATFADYAPSMCKKDPEFAQEMVTQCLSLMTDIGVDDDDASEWNA  335
            +KDL D  RQ ALEL+ T A+ AP MC+K P+F   +V  CLS+MT++    DDA +W  
Sbjct  1    NKDLDDAARQVALELLVTLAEAAPGMCRKQPQFTNALVPICLSMMTEV----DDAEDWYT  56

Query  336  SEDLDLEESDLNHVAGEQCMDRLANKLGGQVILP  369
            S+DLD ++++ N+V GEQ +DRLA +LGG+ +LP
Sbjct  57   SDDLDDDDNEDNYVFGEQALDRLACRLGGKALLP  90


>CDD:465877 pfam18816, Importin_rep_5, Importin repeat.  The importin subunit 
beta-3 has a superhelical structure composed of tandem 
repeats structurally similar to HEAT repeats. This Pfam entry 
includes a single repeat unit and includes sequences not captured 
by pfam18808.
Length=52

 Score = 100 bits (251),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 30/52 (58%), Positives = 38/52 (73%), Gaps = 0/52 (0%)

Query  1010  DEEAAPYAYSFLAQLIDQQNPVVMSNADKVFGYIVQALEAETLQGQTAGRVA  1061
             DEEAAP+AY FLA+LI+Q +P V S   KV   +VQALE ++L G+TA RV 
Sbjct  1     DEEAAPFAYRFLAELIEQNHPAVTSQIPKVVDSVVQALEHKSLSGKTAERVV  52


>CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat.  The HEAT repeat family 
is related to armadillo/beta-catenin-like repeats (see pfam00514). 
These EZ repeats are found in subunits of cyanobacterial 
phycocyanin lyase and other proteins and probably carry 
out a scaffolding role.
Length=55

 Score = 56.6 bits (137),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 0/55 (0%)

Query  384  WRDRHAALMAISAISEGCRDLMVGELDQVLALVVPALQDPHPRVRYAGCNALGQM  438
            WR R AA +A+ +++EG  DL+   + ++L  ++P L D    VR A   ALG++
Sbjct  1    WRVREAAALALGSLAEGGPDLLAPAVPELLPALLPLLNDDSDLVREAAAWALGRL  55



Lambda      K        H        a         alpha
   0.318    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1393445524


Query= TCONS_00001225

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425756 pfam00571, CBS, CBS domain. CBS domains are small intr...  56.8    2e-11


>CDD:425756 pfam00571, CBS, CBS domain.  CBS domains are small intracellular 
modules that pair together to form a stable globular domain. 
This family represents a single CBS domain. Pairs of these 
domains have been termed a Bateman domain. CBS domains have 
been shown to bind ligands with an adenosyl group such as 
AMP, ATP and S-AdoMet. CBS domains are found attached to a 
wide range of other protein domains suggesting that CBS domains 
may play a regulatory role making proteins sensitive to 
adenosyl carrying ligands. The region containing the CBS domains 
in Cystathionine-beta synthase is involved in regulation 
by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. 
The CBS domains from IMPDH and the chloride channel CLC2 bind 
ATP.
Length=57

 Score = 56.8 bits (138),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 19/49 (39%), Positives = 30/49 (61%), Gaps = 0/49 (0%)

Query  168  VAEIMTKNPLCARTDTSATDALDLMVRKGFRHLPVMDENQDISGILDIT  216
            V +IMTK+ +    DT+  +AL+LM   G   LPV+DE+  + GI+ + 
Sbjct  1    VKDIMTKDVVTVSPDTTLEEALELMREHGISRLPVVDEDGKLVGIVTLK  49



Lambda      K        H        a         alpha
   0.315    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00001226

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425756 pfam00571, CBS, CBS domain. CBS domains are small intr...  55.7    8e-11


>CDD:425756 pfam00571, CBS, CBS domain.  CBS domains are small intracellular 
modules that pair together to form a stable globular domain. 
This family represents a single CBS domain. Pairs of these 
domains have been termed a Bateman domain. CBS domains have 
been shown to bind ligands with an adenosyl group such as 
AMP, ATP and S-AdoMet. CBS domains are found attached to a 
wide range of other protein domains suggesting that CBS domains 
may play a regulatory role making proteins sensitive to 
adenosyl carrying ligands. The region containing the CBS domains 
in Cystathionine-beta synthase is involved in regulation 
by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. 
The CBS domains from IMPDH and the chloride channel CLC2 bind 
ATP.
Length=57

 Score = 55.7 bits (135),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 19/49 (39%), Positives = 30/49 (61%), Gaps = 0/49 (0%)

Query  92   VAEIMTKNPLCARTDTSATDALDLMVRKGFRHLPVMDENQDISGILDIT  140
            V +IMTK+ +    DT+  +AL+LM   G   LPV+DE+  + GI+ + 
Sbjct  1    VKDIMTKDVVTVSPDTTLEEALELMREHGISRLPVVDEDGKLVGIVTLK  49



Lambda      K        H        a         alpha
   0.315    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 736753004


Query= TCONS_00007037

Length=944
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465881 pfam18829, Importin_rep_6, Importin repeat 6. The impo...  165     2e-48
CDD:408579 pfam18808, Importin_rep_4, Importin repeat. The import...  130     2e-36
CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat ...  57.8    3e-11


>CDD:465881 pfam18829, Importin_rep_6, Importin repeat 6.  The importin subunit 
beta-3 has a superhelical structure composed of tandem 
repeats structurally similar to HEAT repeats. This Pfam entry 
represents two consecutive repeat units and includes sequences 
captured by pfam18808.
Length=110

 Score = 165 bits (420),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 51/110 (46%), Positives = 67/110 (61%), Gaps = 0/110 (0%)

Query  675  TLAEMYQCFYESVEVVGKNCLSPQHMEAFIESAKSTLEDYQVRVKARLEERADAEEGDEE  734
             LAE Y    E +EV+G NCLS + ME FI++  S L +Y  RVK R EER D +  +E 
Sbjct  1    VLAEYYSSLAECIEVLGPNCLSDEQMEEFIKAINSNLTEYFERVKEREEERKDDDYDEEV  60

Query  735  DLDYEYAVEDDQNLLSDMNKAFHTIFKNQGTTFLPSWQRLLPFYDAFITS  784
            + D E   E D+ LLS++NKA H IFK   T FLP +++LLP   AF+  
Sbjct  61   EEDLEEEEETDEELLSEINKAIHAIFKTHKTAFLPYFEQLLPTVVAFLND  110


>CDD:408579 pfam18808, Importin_rep_4, Importin repeat.  The importin subunit 
beta-3 has a superhelical structure composed of tandem 
repeats structurally similar to HEAT repeats. This Pfam entry 
includes a single repeat unit.
Length=90

 Score = 130 bits (329),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 47/94 (50%), Positives = 67/94 (71%), Gaps = 4/94 (4%)

Query  181  DKDLSDQVRQNALELMATFADYAPSMCKKDPEFAQEMVTQCLSLMTDIGVDDDDASEWNA  240
            +KDL D  RQ ALEL+ T A+ AP MC+K P+F   +V  CLS+MT++    DDA +W  
Sbjct  1    NKDLDDAARQVALELLVTLAEAAPGMCRKQPQFTNALVPICLSMMTEV----DDAEDWYT  56

Query  241  SEDLDLEESDLNHVAGEQCMDRLANKLGGQVILP  274
            S+DLD ++++ N+V GEQ +DRLA +LGG+ +LP
Sbjct  57   SDDLDDDDNEDNYVFGEQALDRLACRLGGKALLP  90


>CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat.  The HEAT repeat family 
is related to armadillo/beta-catenin-like repeats (see pfam00514). 
These EZ repeats are found in subunits of cyanobacterial 
phycocyanin lyase and other proteins and probably carry 
out a scaffolding role.
Length=55

 Score = 57.8 bits (140),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 0/55 (0%)

Query  289  WRDRHAALMAISAISEGCRDLMVGELDQVLALVVPALQDPHPRVRYAGCNALGQM  343
            WR R AA +A+ +++EG  DL+   + ++L  ++P L D    VR A   ALG++
Sbjct  1    WRVREAAALALGSLAEGGPDLLAPAVPELLPALLPLLNDDSDLVREAAAWALGRL  55



Lambda      K        H        a         alpha
   0.318    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1200662848


Query= TCONS_00001227

Length=759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459764 pfam00330, Aconitase, Aconitase family (aconitate hydr...  548     0.0  
CDD:459908 pfam00694, Aconitase_C, Aconitase C-terminal domain. M...  161     6e-47


>CDD:459764 pfam00330, Aconitase, Aconitase family (aconitate hydratase). 
 
Length=460

 Score = 548 bits (1416),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/486 (38%), Positives = 243/486 (50%), Gaps = 61/486 (13%)

Query  28   EKILYAHLDNAEESLLTGTNNGKDIRGKANLKLKPDRVAMQDASAQMALLQFMSCGLP--  85
            EKI  AHL    +                +L   PDRV M D ++  A +   + G    
Sbjct  1    EKIWDAHLVEELDG---------------SLLYIPDRVLMHDVTSPQAFVDLRAAGRAVR  45

Query  86   ---------STAVPASIHCDHMIVGERGADTDLPASIEGNREVFDFLESAAKRYGIEFWP  136
                        VP  +  DH        D ++   I  N+E +DFLE  AK++GI F P
Sbjct  46   RPGGTPATIDHLVPTDLVIDH---APDALDKNIEDEISRNKEQYDFLEWNAKKFGIRFVP  102

Query  137  PGAGIIHQSVLEN-YAAPGLMMLGTDSHTPNAGGLGAIAIGVGGADAVDALVDAPWELKA  195
            PG GI+HQ  LE   A PG+ ++GTDSHT   GGLGA+A GVGG++A   L   P E+K 
Sbjct  103  PGQGIVHQVGLEYGLALPGMTIVGTDSHTTTHGGLGALAFGVGGSEAEHVLATQPLEMKK  162

Query  196  PRILGVRLEGRLSGWASPKDIILHLAGKLTVRGGTGYVIEYHGPGVETLSCTGMATCCNM  255
            P+++GV+L G+L    + KD+IL + GKL V+GGTG V+E+ GPGV +LS  G AT CNM
Sbjct  163  PKVVGVKLTGKLPPGVTAKDVILAIIGKLGVKGGTGKVVEFFGPGVRSLSMEGRATICNM  222

Query  256  GAEVGATTSVFPFSPSMVPYLQATHRGHVAQAAAEIAASGPKNLLRADDGAEYDQLITID  315
              E GAT  +FP   +   YL+AT R    +  A   A   K  L +D GAEYD+++ ID
Sbjct  223  AIEYGATAGLFPPDETTFEYLRATGRPEAPKGEAYDKAVAWKT-LASDPGAEYDKVVEID  281

Query  316  LSTLEPHVNGPFTPDLSVRLSD-----FANTVR-------------ENKWPETLGA---G  354
            LST+EP V GP  P  +V LS+     FA+ V+                 P + G     
Sbjct  282  LSTIEPMVTGPTRPQDAVPLSELVPDPFADAVKRKAAERALEYMGLGPGTPLSDGKVDIA  341

Query  355  LIGSCTNSSYEDMTRAEDLVKQASAAGLKPKAD--FFITPGSEQIRATLDRDQTLASFSE  412
             IGSCTNSS ED+  A  L+K+A   GLK        + PGSE +RA  + +       E
Sbjct  342  FIGSCTNSSIEDLRAAAGLLKKAVEKGLKVAPGVKASVVPGSEVVRAYAEAEGLDKILEE  401

Query  413  AGGTVLANACGPCIGQWKRTDGVAKGEDNAIFTSYNRNFPGRNDGNRRTMNFLASPEIVT  472
            AG       C  CIG   R   +  GE     +S NRNF GR          LASP +V 
Sbjct  402  AGFEWRGPGCSMCIGNSDR---LPPGE--RCVSSSNRNFEGRQ--GPGGRTHLASPALVA  454

Query  473  ALAYSG  478
            A A +G
Sbjct  455  AAAIAG  460


>CDD:459908 pfam00694, Aconitase_C, Aconitase C-terminal domain.  Members 
of this family usually also match to pfam00330. This domain 
undergoes conformational change in the enzyme mechanism.
Length=131

 Score = 161 bits (409),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 62/130 (48%), Gaps = 1/130 (1%)

Query  558  LKVLYKVKGQCTTDTISAAGPWLKYKGHLPNISANTLIGAVNAATGETNVAYD-DAGNKH  616
            + V  K+KG+ T D  S     L          AN  IG +N              G   
Sbjct  1    MPVFLKLKGKTTPDFNSNVDTDLIIPKQFLGTIANIGIGNINFEGWRYGKVRYLPDGENP  60

Query  617  SIPDLAARWKADGIEWLVVAEDNYGEGSAREHAALQPRYLGGRIIVAKSFARIHETNLKK  676
               D A R+K  G   +V+   N+G GS+REHAA   R LG + ++A+SFARIH  NL K
Sbjct  61   DFYDAAMRYKQHGAPIVVIGGKNFGCGSSREHAAWALRDLGIKAVIAESFARIHRNNLIK  120

Query  677  QGVVPLTFAD  686
             G++PL F +
Sbjct  121  NGLLPLEFPE  130



Lambda      K        H        a         alpha
   0.315    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 967676080


Query= TCONS_00001228

Length=759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459764 pfam00330, Aconitase, Aconitase family (aconitate hydr...  548     0.0  
CDD:459908 pfam00694, Aconitase_C, Aconitase C-terminal domain. M...  161     6e-47


>CDD:459764 pfam00330, Aconitase, Aconitase family (aconitate hydratase). 
 
Length=460

 Score = 548 bits (1416),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/486 (38%), Positives = 243/486 (50%), Gaps = 61/486 (13%)

Query  28   EKILYAHLDNAEESLLTGTNNGKDIRGKANLKLKPDRVAMQDASAQMALLQFMSCGLP--  85
            EKI  AHL    +                +L   PDRV M D ++  A +   + G    
Sbjct  1    EKIWDAHLVEELDG---------------SLLYIPDRVLMHDVTSPQAFVDLRAAGRAVR  45

Query  86   ---------STAVPASIHCDHMIVGERGADTDLPASIEGNREVFDFLESAAKRYGIEFWP  136
                        VP  +  DH        D ++   I  N+E +DFLE  AK++GI F P
Sbjct  46   RPGGTPATIDHLVPTDLVIDH---APDALDKNIEDEISRNKEQYDFLEWNAKKFGIRFVP  102

Query  137  PGAGIIHQSVLEN-YAAPGLMMLGTDSHTPNAGGLGAIAIGVGGADAVDALVDAPWELKA  195
            PG GI+HQ  LE   A PG+ ++GTDSHT   GGLGA+A GVGG++A   L   P E+K 
Sbjct  103  PGQGIVHQVGLEYGLALPGMTIVGTDSHTTTHGGLGALAFGVGGSEAEHVLATQPLEMKK  162

Query  196  PRILGVRLEGRLSGWASPKDIILHLAGKLTVRGGTGYVIEYHGPGVETLSCTGMATCCNM  255
            P+++GV+L G+L    + KD+IL + GKL V+GGTG V+E+ GPGV +LS  G AT CNM
Sbjct  163  PKVVGVKLTGKLPPGVTAKDVILAIIGKLGVKGGTGKVVEFFGPGVRSLSMEGRATICNM  222

Query  256  GAEVGATTSVFPFSPSMVPYLQATHRGHVAQAAAEIAASGPKNLLRADDGAEYDQLITID  315
              E GAT  +FP   +   YL+AT R    +  A   A   K  L +D GAEYD+++ ID
Sbjct  223  AIEYGATAGLFPPDETTFEYLRATGRPEAPKGEAYDKAVAWKT-LASDPGAEYDKVVEID  281

Query  316  LSTLEPHVNGPFTPDLSVRLSD-----FANTVR-------------ENKWPETLGA---G  354
            LST+EP V GP  P  +V LS+     FA+ V+                 P + G     
Sbjct  282  LSTIEPMVTGPTRPQDAVPLSELVPDPFADAVKRKAAERALEYMGLGPGTPLSDGKVDIA  341

Query  355  LIGSCTNSSYEDMTRAEDLVKQASAAGLKPKAD--FFITPGSEQIRATLDRDQTLASFSE  412
             IGSCTNSS ED+  A  L+K+A   GLK        + PGSE +RA  + +       E
Sbjct  342  FIGSCTNSSIEDLRAAAGLLKKAVEKGLKVAPGVKASVVPGSEVVRAYAEAEGLDKILEE  401

Query  413  AGGTVLANACGPCIGQWKRTDGVAKGEDNAIFTSYNRNFPGRNDGNRRTMNFLASPEIVT  472
            AG       C  CIG   R   +  GE     +S NRNF GR          LASP +V 
Sbjct  402  AGFEWRGPGCSMCIGNSDR---LPPGE--RCVSSSNRNFEGRQ--GPGGRTHLASPALVA  454

Query  473  ALAYSG  478
            A A +G
Sbjct  455  AAAIAG  460


>CDD:459908 pfam00694, Aconitase_C, Aconitase C-terminal domain.  Members 
of this family usually also match to pfam00330. This domain 
undergoes conformational change in the enzyme mechanism.
Length=131

 Score = 161 bits (409),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 62/130 (48%), Gaps = 1/130 (1%)

Query  558  LKVLYKVKGQCTTDTISAAGPWLKYKGHLPNISANTLIGAVNAATGETNVAYD-DAGNKH  616
            + V  K+KG+ T D  S     L          AN  IG +N              G   
Sbjct  1    MPVFLKLKGKTTPDFNSNVDTDLIIPKQFLGTIANIGIGNINFEGWRYGKVRYLPDGENP  60

Query  617  SIPDLAARWKADGIEWLVVAEDNYGEGSAREHAALQPRYLGGRIIVAKSFARIHETNLKK  676
               D A R+K  G   +V+   N+G GS+REHAA   R LG + ++A+SFARIH  NL K
Sbjct  61   DFYDAAMRYKQHGAPIVVIGGKNFGCGSSREHAAWALRDLGIKAVIAESFARIHRNNLIK  120

Query  677  QGVVPLTFAD  686
             G++PL F +
Sbjct  121  NGLLPLEFPE  130



Lambda      K        H        a         alpha
   0.315    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 967676080


Query= TCONS_00001229

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00001231

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459808 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein...  57.7    3e-12


>CDD:459808 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein.  This 
family includes archaebacterial L12, eukaryotic P0, P1 and 
P2.
Length=87

 Score = 57.7 bits (140),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 25/45 (56%), Positives = 32/45 (71%), Gaps = 1/45 (2%)

Query  21  EITADKIQTLLGAAKVADVEPIWTSLFAKALEGKDIKDLLTNVGS  65
           E TA  I+ +L AA V +VE +   LFAKALEGK+IK+LL N G+
Sbjct  1   EPTAANIKKVLKAAGV-NVEAVRVKLFAKALEGKNIKELLANGGA  44



Lambda      K        H        a         alpha
   0.317    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00001230

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00007038

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00007039

Length=741
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461476 pfam04910, Tcf25, Transcriptional repressor TCF25. Mem...  304     4e-98


>CDD:461476 pfam04910, Tcf25, Transcriptional repressor TCF25.  Members of 
this family are transcriptional repressors. They may act by 
increasing histone deacetylase activity at promoter regions.
Length=323

 Score = 304 bits (781),  Expect = 4e-98, Method: Composition-based stats.
 Identities = 114/326 (35%), Positives = 167/326 (51%), Gaps = 19/326 (6%)

Query  264  YQIVHNSAYTDVQRQFDMCVESMDPQRMIHLLQYNPYHISTLLQVSEIAKHQGDHAVSAD  323
            ++  H+  Y  VQR F   VES DP+ +I LLQ  PYH+ TLLQ+SE+ +   D + + D
Sbjct  1    FKFEHSKEYQAVQRFFLSAVESPDPEALIALLQKYPYHVDTLLQLSEVCRQGEDKSTAND  60

Query  324  LLERALFNIGRSAHSSFGNRLKEGQAKLDFVHMANRELWLVGWRYIANLGMKGTWRTAYE  383
            L+ERALF   R+ H  F   L  G  +LD+    NR+ +L  +R+I  LG +G WRTA E
Sbjct  61   LIERALFAFERAFHPLF--NLTSGLCRLDYRRFENRQFFLALFRHIQFLGRRGCWRTALE  118

Query  384  WAKLLLSLNDD-DPYCIRLLIDHLALRGREYAHFVDLCAQTRLSEDWAPLPNIQCSLALA  442
            + KLLLSL+   DP    L ID  AL+ +EY   + L  +     + + LP    S ALA
Sbjct  119  FCKLLLSLDPLEDPLGALLFIDFYALKSKEYEWLIRLSEEWESQRNLSQLPGFAFSTALA  178

Query  443  YL-----RLNKPKECRQQLRRAMSRYPWVFCKLAQELDIQPMPKRIWGKM--------PP  489
             L     RL   ++  + L++A+  +P V   L  +  +Q  P ++              
Sbjct  179  LLLLEEERLGDHEKADEALQKALLMFPGVLPPLLDKCGVQL-PAKVRSHPFFKSESSNSQ  237

Query  490  TDAHELLTELYIARAKDLWNTPEVVS-LIVEIADTLPEEEEPIEPPEITLDIARHVVLSD  548
            + A  LL++LY+ R+K LW  PEV+S L   +   L   +   E   +  +I RHV+LS+
Sbjct  238  SAALHLLSKLYVERSKSLWKEPEVLSWLESNVLSVLKRSKSKSEEVPLPRNILRHVILSE  297

Query  549  IPRVTTHLPGRF-VSGRISASDPLPP  573
               +   LP     S  +   DPLPP
Sbjct  298  EKSLMAALPPEIWSSEPVLEFDPLPP  323



Lambda      K        H        a         alpha
   0.316    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 941483344


Query= TCONS_00007040

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  145     2e-40


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 145 bits (368),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 76/262 (29%), Positives = 104/262 (40%), Gaps = 60/262 (23%)

Query  211  NDGGSTSDWMFWAVFDGHSGWTTSAKLRNVLISYVARELNTTYKAAATNPSLISPSSEAV  270
            N       W F+AVFDGH G   +      L               A   S      E +
Sbjct  26   NSSSGKDSWSFFAVFDGHGGSEAAKYCGKHLH-----------TILALRRSF--LEGEKL  72

Query  271  DAAIKQAFVRLDNDIVHSSVDKVLKSNSRRAAAELLAPALSGSCALLAFYDSQSKDLKVA  330
            + A++++F   D D V  S +K                  SG  A++A        L VA
Sbjct  73   EDALRKSF-LEDTDEVLRSAEKE--------------DLDSGCTAVVALISGN--KLYVA  115

Query  331  CAGDSRAVLGRRGPTGKWTATPLSEDQTGGTPSEMKRLREEHPGEPNVVRNGRILGQLEP  390
              GDSRAVL R G   K     L++D       E +R+R        V RNGR+ G L  
Sbjct  116  NVGDSRAVLCRNGNAIK----RLTKDHKPSDEDERRRIRAAGGF---VSRNGRVNGVLAV  168

Query  391  SRSFGDAFYKWSKETQEKIKKQFFGRTPHPLLKTPPYVTAEPVITTTKIEPSKGDFVVMA  450
            SR+FGD   K                           V+AEP IT+  I     +F+++A
Sbjct  169  SRAFGDFELK----------------------PGEQAVSAEPDITSHTITEDD-EFLILA  205

Query  451  TDGLWEMLSNEEVVGLVGQWID  472
             DGLW++LS++EVV LV   + 
Sbjct  206  CDGLWDVLSDQEVVDLVRSELS  227



Lambda      K        H        a         alpha
   0.314    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 709853300


Query= TCONS_00001232

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  145     4e-40


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 145 bits (367),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 76/262 (29%), Positives = 105/262 (40%), Gaps = 60/262 (23%)

Query  211  NDGGSTSDWMFWAVFDGHSGWTTSAKLRNVLISYVARELNTTYKAAATNPSLISPSSEAV  270
            N       W F+AVFDGH G   +      L               A   S      E +
Sbjct  26   NSSSGKDSWSFFAVFDGHGGSEAAKYCGKHLH-----------TILALRRSF--LEGEKL  72

Query  271  DAAIKQAFVRLDNDIVHSSVDKVLKSNSRRAAAELLAPALSGSCALLAFYDSQSKDLKVA  330
            + A++++F+  D D V  S +K                  SG  A++A        L VA
Sbjct  73   EDALRKSFLE-DTDEVLRSAEKE--------------DLDSGCTAVVALISGN--KLYVA  115

Query  331  CAGDSRAVLGRRGPTGKWTATPLSEDQTGGTPSEMKRLREEHPGEPNVVRNGRILGQLEP  390
              GDSRAVL R G   K     L++D       E +R+R        V RNGR+ G L  
Sbjct  116  NVGDSRAVLCRNGNAIK----RLTKDHKPSDEDERRRIRAAGGF---VSRNGRVNGVLAV  168

Query  391  SRSFGDAFYKWSKETQEKIKKQFFGRTPHPLLKTPPYVTAEPVITTTKIEPSKGDFVVMA  450
            SR+FGD   K                           V+AEP IT+  I     +F+++A
Sbjct  169  SRAFGDFELK----------------------PGEQAVSAEPDITSHTITEDD-EFLILA  205

Query  451  TDGLWEMLSNEEVVGLVGQWID  472
             DGLW++LS++EVV LV   + 
Sbjct  206  CDGLWDVLSDQEVVDLVRSELS  227



Lambda      K        H        a         alpha
   0.314    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 763652708


Query= TCONS_00001233

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  145     4e-40


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 145 bits (367),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 76/262 (29%), Positives = 105/262 (40%), Gaps = 60/262 (23%)

Query  211  NDGGSTSDWMFWAVFDGHSGWTTSAKLRNVLISYVARELNTTYKAAATNPSLISPSSEAV  270
            N       W F+AVFDGH G   +      L               A   S      E +
Sbjct  26   NSSSGKDSWSFFAVFDGHGGSEAAKYCGKHLH-----------TILALRRSF--LEGEKL  72

Query  271  DAAIKQAFVRLDNDIVHSSVDKVLKSNSRRAAAELLAPALSGSCALLAFYDSQSKDLKVA  330
            + A++++F+  D D V  S +K                  SG  A++A        L VA
Sbjct  73   EDALRKSFLE-DTDEVLRSAEKE--------------DLDSGCTAVVALISGN--KLYVA  115

Query  331  CAGDSRAVLGRRGPTGKWTATPLSEDQTGGTPSEMKRLREEHPGEPNVVRNGRILGQLEP  390
              GDSRAVL R G   K     L++D       E +R+R        V RNGR+ G L  
Sbjct  116  NVGDSRAVLCRNGNAIK----RLTKDHKPSDEDERRRIRAAGGF---VSRNGRVNGVLAV  168

Query  391  SRSFGDAFYKWSKETQEKIKKQFFGRTPHPLLKTPPYVTAEPVITTTKIEPSKGDFVVMA  450
            SR+FGD   K                           V+AEP IT+  I     +F+++A
Sbjct  169  SRAFGDFELK----------------------PGEQAVSAEPDITSHTITEDD-EFLILA  205

Query  451  TDGLWEMLSNEEVVGLVGQWID  472
             DGLW++LS++EVV LV   + 
Sbjct  206  CDGLWDVLSDQEVVDLVRSELS  227



Lambda      K        H        a         alpha
   0.314    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 763652708


Query= TCONS_00007041

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  145     2e-40


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 145 bits (368),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 76/262 (29%), Positives = 104/262 (40%), Gaps = 60/262 (23%)

Query  211  NDGGSTSDWMFWAVFDGHSGWTTSAKLRNVLISYVARELNTTYKAAATNPSLISPSSEAV  270
            N       W F+AVFDGH G   +      L               A   S      E +
Sbjct  26   NSSSGKDSWSFFAVFDGHGGSEAAKYCGKHLH-----------TILALRRSF--LEGEKL  72

Query  271  DAAIKQAFVRLDNDIVHSSVDKVLKSNSRRAAAELLAPALSGSCALLAFYDSQSKDLKVA  330
            + A++++F   D D V  S +K                  SG  A++A        L VA
Sbjct  73   EDALRKSF-LEDTDEVLRSAEKE--------------DLDSGCTAVVALISGN--KLYVA  115

Query  331  CAGDSRAVLGRRGPTGKWTATPLSEDQTGGTPSEMKRLREEHPGEPNVVRNGRILGQLEP  390
              GDSRAVL R G   K     L++D       E +R+R        V RNGR+ G L  
Sbjct  116  NVGDSRAVLCRNGNAIK----RLTKDHKPSDEDERRRIRAAGGF---VSRNGRVNGVLAV  168

Query  391  SRSFGDAFYKWSKETQEKIKKQFFGRTPHPLLKTPPYVTAEPVITTTKIEPSKGDFVVMA  450
            SR+FGD   K                           V+AEP IT+  I     +F+++A
Sbjct  169  SRAFGDFELK----------------------PGEQAVSAEPDITSHTITEDD-EFLILA  205

Query  451  TDGLWEMLSNEEVVGLVGQWID  472
             DGLW++LS++EVV LV   + 
Sbjct  206  CDGLWDVLSDQEVVDLVRSELS  227



Lambda      K        H        a         alpha
   0.314    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 709853300


Query= TCONS_00007042

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  89.3    2e-22


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 89.3 bits (222),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 26/108 (24%)

Query  1    MKRLREEHPGEPNVVRNGRILGQLEPSRSFGDAFYKWSKETQEKIKKQFFGRTPHPLLKT  60
             +R+R        V RNGR+ G L  SR+FGD   K                        
Sbjct  146  RRRIRAAGGF---VSRNGRVNGVLAVSRAFGDFELK----------------------PG  180

Query  61   PPYVTAEPVITTTKIEPSKGDFVVMATDGLWEMLSNEEVVGLVGQWID  108
               V+AEP IT+  I     +F+++A DGLW++LS++EVV LV   + 
Sbjct  181  EQAVSAEPDITSHTITEDD-EFLILACDGLWDVLSDQEVVDLVRSELS  227



Lambda      K        H        a         alpha
   0.316    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00007043

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  89.3    5e-22


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 89.3 bits (222),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 26/108 (24%)

Query  1    MKRLREEHPGEPNVVRNGRILGQLEPSRSFGDAFYKWSKETQEKIKKQFFGRTPHPLLKT  60
             +R+R        V RNGR+ G L  SR+FGD   K                        
Sbjct  146  RRRIRAAGGF---VSRNGRVNGVLAVSRAFGDFELK----------------------PG  180

Query  61   PPYVTAEPVITTTKIEPSKGDFVVMATDGLWEMLSNEEVVGLVGQWID  108
               V+AEP IT+  I     +F+++A DGLW++LS++EVV LV   + 
Sbjct  181  EQAVSAEPDITSHTITEDD-EFLILACDGLWDVLSDQEVVDLVRSELS  227



Lambda      K        H        a         alpha
   0.315    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00001234

Length=446


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.122    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00007044

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464944 pfam15924, ALG11_N, ALG11 mannosyltransferase N-terminus   149     3e-46


>CDD:464944 pfam15924, ALG11_N, ALG11 mannosyltransferase N-terminus.  
Length=209

 Score = 149 bits (380),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 49/97 (51%), Positives = 64/97 (66%), Gaps = 16/97 (16%)

Query  112  EGIIGFFHPFCNAGGGGERVLWEAVRATQRRWPKAICAIYTGDHEVNKMAMLERVEVSLA  171
            +GI+GFFHP+CNAGGGGERVLW AVRATQRR+P AIC +YTGD + +K  +L +V     
Sbjct  1    KGIVGFFHPYCNAGGGGERVLWCAVRATQRRYPNAICVVYTGDIDASKEEILAKV-----  55

Query  172  GLCRGLADSILQNRFNIQLHAPAVVLLYLTTRKYVLS  208
                       ++RFNI+L    +V +YL  RK V +
Sbjct  56   -----------KSRFNIELDPSRIVFVYLRKRKLVEA  81



Lambda      K        H        a         alpha
   0.322    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00001235

Length=446


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.122    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00001236

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:311610 pfam07745, Glyco_hydro_53, Glycosyl hydrolase family 5...  228     5e-75


>CDD:311610 pfam07745, Glyco_hydro_53, Glycosyl hydrolase family 53.  This 
domain belongs to family 53 of the glycosyl hydrolase classification. 
These enzymes are enzymes are endo-1,4- beta-galactanases 
(EC:3.2.1.89). The structure of this domain is known 
and has a TIM barrel fold.
Length=333

 Score = 228 bits (583),  Expect = 5e-75, Method: Composition-based stats.
 Identities = 89/230 (39%), Positives = 129/230 (56%), Gaps = 23/230 (10%)

Query  2    EVCNTFASNGIDVSIVAIGNEIRNGLLWPLGKPDNYANIANILHSAAFGVKDSTLSPKPK  61
            +V N     GID  +V +GNEI +G LWP GK  N+ N+A +L+S    V++   SP  K
Sbjct  114  DVLNALKEAGIDPDMVQVGNEINSGFLWPDGKTPNWDNMAKLLNSGIKAVREV--SPNIK  171

Query  62   IMIHLDNGWDWSAQKFFYNRVLSSGANLVKSDFDLIGVSYYPFYNPSATLSALTTSLKNL  121
            + IHL NG +    +++++ +  +G      DFD+IGVSYYPF+  S TL  LTT+LK++
Sbjct  172  VAIHLANGENNGLYRWWFDNLTKAGV-----DFDVIGVSYYPFW--SGTLENLTTNLKDM  224

Query  122  RSTYGKDVLVVETDWPVSC------PNPAYAFPSDLKDIPFSVAGQTTFVQRVANIVAQT  175
             S YGKDV+VVET +P +        N      S     P +  GQ T ++ V  +V   
Sbjct  225  ASRYGKDVMVVETAYPWTLDDGDGHGNLDPETSSLTSGYPATPQGQATMLRDVIELVNAV  284

Query  176  PG--GIGLYYWEPAWVQNAA-----LGSSCADNLMVDWSTRQARTSLSVF  218
            PG  G+G++YWEPAW+          GSS  +  + D++ R A  SL+VF
Sbjct  285  PGSRGLGVFYWEPAWIPVGDAGLWGGGSSWDNQALFDFNGR-ALPSLNVF  333



Lambda      K        H        a         alpha
   0.318    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00001237

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:311610 pfam07745, Glyco_hydro_53, Glycosyl hydrolase family 5...  228     5e-75


>CDD:311610 pfam07745, Glyco_hydro_53, Glycosyl hydrolase family 53.  This 
domain belongs to family 53 of the glycosyl hydrolase classification. 
These enzymes are enzymes are endo-1,4- beta-galactanases 
(EC:3.2.1.89). The structure of this domain is known 
and has a TIM barrel fold.
Length=333

 Score = 228 bits (583),  Expect = 5e-75, Method: Composition-based stats.
 Identities = 89/230 (39%), Positives = 129/230 (56%), Gaps = 23/230 (10%)

Query  2    EVCNTFASNGIDVSIVAIGNEIRNGLLWPLGKPDNYANIANILHSAAFGVKDSTLSPKPK  61
            +V N     GID  +V +GNEI +G LWP GK  N+ N+A +L+S    V++   SP  K
Sbjct  114  DVLNALKEAGIDPDMVQVGNEINSGFLWPDGKTPNWDNMAKLLNSGIKAVREV--SPNIK  171

Query  62   IMIHLDNGWDWSAQKFFYNRVLSSGANLVKSDFDLIGVSYYPFYNPSATLSALTTSLKNL  121
            + IHL NG +    +++++ +  +G      DFD+IGVSYYPF+  S TL  LTT+LK++
Sbjct  172  VAIHLANGENNGLYRWWFDNLTKAGV-----DFDVIGVSYYPFW--SGTLENLTTNLKDM  224

Query  122  RSTYGKDVLVVETDWPVSC------PNPAYAFPSDLKDIPFSVAGQTTFVQRVANIVAQT  175
             S YGKDV+VVET +P +        N      S     P +  GQ T ++ V  +V   
Sbjct  225  ASRYGKDVMVVETAYPWTLDDGDGHGNLDPETSSLTSGYPATPQGQATMLRDVIELVNAV  284

Query  176  PG--GIGLYYWEPAWVQNAA-----LGSSCADNLMVDWSTRQARTSLSVF  218
            PG  G+G++YWEPAW+          GSS  +  + D++ R A  SL+VF
Sbjct  285  PGSRGLGVFYWEPAWIPVGDAGLWGGGSSWDNQALFDFNGR-ALPSLNVF  333



Lambda      K        H        a         alpha
   0.318    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00001238

Length=1089
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  93.8    5e-22
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            76.0    1e-15


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 93.8 bits (234),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 85/480 (18%), Positives = 125/480 (26%), Gaps = 263/480 (55%)

Query  120  YEILEELGRGEHGKVKLGRHVTTRQKVAIKIVQRYSKRRRLGKLGNPEDKVKKEVAILKK  179
            YE+L +LG G  G V   +H  T + VAIK +    K +   K    +  + +E+ ILKK
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKI---KKEKIKKKK---DKNILREIKILKK  54

Query  180  ARHPNVVSLLEVIDDPNRQKVYIVLEFVENGEIIWRKKGLREIVQVDKRRLEREKAGIPE  239
              HPN+V L +  +D     +Y+VLE+VE G +                 L  EK    E
Sbjct  55   LNHPNIVRLYDAFEDK--DNLYLVLEYVEGGSL---------------FDLLSEKGAFSE  97

Query  240  TPSFWEECRQYVKTAQRLRRQREKARERRQMKAVHAQQAPIPAWSLEHGAESDEEEEADP  299
                                                                        
Sbjct       ------------------------------------------------------------  

Query  300  AMTRTISRSIASHDETQESPSHSLASAHDSALAAIEGTMYGPYADYSLDRRFSTASSSMG  359
                                                                        
Sbjct       ------------------------------------------------------------  

Query  360  YAPSEPEWFSDDDDMSYVPCLTVNEARNAFRDSLLGLEYLHYQGIIHRDIKPANLLVTSN  419
                                    EA+   +  L GLE                      
Sbjct  98   -----------------------REAKFIMKQILEGLE----------------------  112

Query  420  HRVKISDFGVSYLGRPMRDEEEEQVAETDATELDDARELSKTVGTPAFYAPELCYTGDDF  479
                ++ F                                  VGTP + APE+       
Sbjct  113  SGSSLTTF----------------------------------VGTPWYMAPEV-------  131

Query  480  EETIGSVPKITGAIDVWSLGVTLYGMIFGRLPFVSDDEYSMFQTIVKKDVFIPRKRLQPV  539
               +G  P     +DVWSLG  LY ++ G+ PF   +   +++ I+ +    P       
Sbjct  132  ---LGGNP-YGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPEL-----  182

Query  540  EVDPESISQWPRYSNNNKRMEEELVYEEIDDELYDLLKRLLTKDPVKRITVKEIKHHPWV  599
               P ++S                      +E  DLLK+LL KDP KR+T  +   HPW 
Sbjct  183  ---PSNLS----------------------EEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 76.0 bits (188),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 87/481 (18%), Positives = 134/481 (28%), Gaps = 230/481 (48%)

Query  121  EILEELGRGEHGKVKLGR----HVTTRQKVAIKIVQRYSKRRRLGKLGNPEDKVKKEVAI  176
             + E+LG G  G+V  G        T+ KVA+K ++  +            +   +E +I
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEER-------EDFLEEASI  54

Query  177  LKKARHPNVVSLLEVIDDPNRQKVYIVLEFVENGEIIWRKKGLREIVQVDKRRLEREKAG  236
            +KK  HPN+V LL V      + +YIV E++  G+       L +               
Sbjct  55   MKKLDHPNIVKLLGVC--TQGEPLYIVTEYMPGGD-------LLD---------------  90

Query  237  IPETPSFWEECRQYVKTAQRLRRQREKARERRQMKAVHAQQAPIPAWSLEHGAESDEEEE  296
                                LR+ + K   +  +                          
Sbjct  91   -------------------FLRKHKRKLTLKDLLS-------------------------  106

Query  297  ADPAMTRTISRSIASHDETQESPSHSLASAHDSALAAIEGTMYGPYADYSLDRRFSTASS  356
                    ++  IA                                              
Sbjct  107  --------MALQIAK---------------------------------------------  113

Query  357  SMGYAPSEPEWFSDDDDMSYVPCLTVNEARNAFRDSLLGLEYLHYQGIIHRDIKPANLLV  416
                                                  G+EYL  +  +HRD+   N LV
Sbjct  114  --------------------------------------GMEYLESKNFVHRDLAARNCLV  135

Query  417  TSNHRVKISDFGVSYLGRPMRDEEEEQVAETDATELDDARELSKTVGTPAFYAPELCYTG  476
            + N  VKISDFG+S      RD  ++          D  R+         + APE    G
Sbjct  136  SENLVVKISDFGLS------RDIYDD----------DYYRKRGGGKLPIKWMAPESLKDG  179

Query  477  DDFEETIGSVPKITGAIDVWSLGVTLYGMI-FGRLPFVSDDEYSMFQTIVKKDVFIPRKR  535
                       K T   DVWS GV L+ +   G  P+                       
Sbjct  180  -----------KFTSKSDVWSFGVLLWEIFTLGEQPY-----------------------  205

Query  536  LQPVEVDPESISQWPRYSNNNKRMEEELVYEEIDDELYDLLKRLLTKDPVKRITVKEIKH  595
                 +  E +     +  +  R+ +    E   DELYDL+K+    DP  R T  E+  
Sbjct  206  ---PGMSNEEV---LEFLEDGYRLPQ---PENCPDELYDLMKQCWAYDPEDRPTFSELVE  256

Query  596  H  596
             
Sbjct  257  D  257



Lambda      K        H        a         alpha
   0.312    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1385068096


Query= TCONS_00007045

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0777    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00001240

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00001241

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00001244

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00001243

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00001246

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00007049

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00001247

Length=276


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00001248

Length=276


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00001249

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  396     1e-138


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 396 bits (1019),  Expect = 1e-138, Method: Composition-based stats.
 Identities = 153/301 (51%), Positives = 187/301 (62%), Gaps = 9/301 (3%)

Query  80   YDMVVTRRMEMAADRLYKEKKIRGFCHLSVGQEAVSTGIEHAITRDDKVITAYRCHGYAL  139
              M+  RRME A D LYK + IRGF HL  GQEA   GI  A+   D +I  YR HG  L
Sbjct  1    RRMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLL  60

Query  140  MRGGTVRSIIGELLGRREGIAYGKGGSMHMFA----PNFYGGNGIVGAQVPVGAGLAFAQ  195
             RG ++  I  EL GR    A GKGGSMH +       FYGGNGI+GAQVP+GAG+A A 
Sbjct  61   ARGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAA  117

Query  196  QYNGEKATSIVLYGDGASNQGQVFEAFNMAKLWNLPAIFGCENNKYGMGTSAARSSALTD  255
            +Y G+K  +I LYGDGA+NQG  FE  N A LW LP IF CENN+YG+ T A R+SA T 
Sbjct  118  KYRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTT  177

Query  256  YYK--RGQYIPGIKVNGMDVLATKAAVQYAREYTIAGNGPLVFEYVTYRYGGHSMSDPGT  313
            Y    RG  IPG+ V+GMD LA   A ++A E    G GP + E VTYRYGGHSMSD  +
Sbjct  178  YADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPS  237

Query  314  TYRSREEIQRMRSTNDPIAGLKQKILDWKVMTEEELKALDKSARSHVDEEVAIAEQMPAP  373
            TYR+R+E + +R   DPI   K+ ++   V +EEELKA++K  R  V+E    AE  P P
Sbjct  238  TYRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEP  297

Query  374  E  374
             
Sbjct  298  H  298



Lambda      K        H        a         alpha
   0.318    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00007051

Length=453


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00001250

Length=351


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00007052

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  396     1e-138


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 396 bits (1019),  Expect = 1e-138, Method: Composition-based stats.
 Identities = 153/301 (51%), Positives = 187/301 (62%), Gaps = 9/301 (3%)

Query  80   YDMVVTRRMEMAADRLYKEKKIRGFCHLSVGQEAVSTGIEHAITRDDKVITAYRCHGYAL  139
              M+  RRME A D LYK + IRGF HL  GQEA   GI  A+   D +I  YR HG  L
Sbjct  1    RRMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLL  60

Query  140  MRGGTVRSIIGELLGRREGIAYGKGGSMHMFA----PNFYGGNGIVGAQVPVGAGLAFAQ  195
             RG ++  I  EL GR    A GKGGSMH +       FYGGNGI+GAQVP+GAG+A A 
Sbjct  61   ARGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAA  117

Query  196  QYNGEKATSIVLYGDGASNQGQVFEAFNMAKLWNLPAIFGCENNKYGMGTSAARSSALTD  255
            +Y G+K  +I LYGDGA+NQG  FE  N A LW LP IF CENN+YG+ T A R+SA T 
Sbjct  118  KYRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTT  177

Query  256  YYK--RGQYIPGIKVNGMDVLATKAAVQYAREYTIAGNGPLVFEYVTYRYGGHSMSDPGT  313
            Y    RG  IPG+ V+GMD LA   A ++A E    G GP + E VTYRYGGHSMSD  +
Sbjct  178  YADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPS  237

Query  314  TYRSREEIQRMRSTNDPIAGLKQKILDWKVMTEEELKALDKSARSHVDEEVAIAEQMPAP  373
            TYR+R+E + +R   DPI   K+ ++   V +EEELKA++K  R  V+E    AE  P P
Sbjct  238  TYRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEP  297

Query  374  E  374
             
Sbjct  298  H  298



Lambda      K        H        a         alpha
   0.318    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00001251

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  395     4e-139


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 395 bits (1018),  Expect = 4e-139, Method: Composition-based stats.
 Identities = 153/301 (51%), Positives = 187/301 (62%), Gaps = 9/301 (3%)

Query  45   YDMVVTRRMEMAADRLYKEKKIRGFCHLSVGQEAVSTGIEHAITRDDKVITAYRCHGYAL  104
              M+  RRME A D LYK + IRGF HL  GQEA   GI  A+   D +I  YR HG  L
Sbjct  1    RRMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLL  60

Query  105  MRGGTVRSIIGELLGRREGIAYGKGGSMHMFA----PNFYGGNGIVGAQVPVGAGLAFAQ  160
             RG ++  I  EL GR    A GKGGSMH +       FYGGNGI+GAQVP+GAG+A A 
Sbjct  61   ARGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAA  117

Query  161  QYNGEKATSIVLYGDGASNQGQVFEAFNMAKLWNLPAIFGCENNKYGMGTSAARSSALTD  220
            +Y G+K  +I LYGDGA+NQG  FE  N A LW LP IF CENN+YG+ T A R+SA T 
Sbjct  118  KYRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTT  177

Query  221  YYK--RGQYIPGIKVNGMDVLATKAAVQYAREYTIAGNGPLVFEYVTYRYGGHSMSDPGT  278
            Y    RG  IPG+ V+GMD LA   A ++A E    G GP + E VTYRYGGHSMSD  +
Sbjct  178  YADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPS  237

Query  279  TYRSREEIQRMRSTNDPIAGLKQKILDWKVMTEEELKALDKSARSHVDEEVAIAEQMPAP  338
            TYR+R+E + +R   DPI   K+ ++   V +EEELKA++K  R  V+E    AE  P P
Sbjct  238  TYRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEP  297

Query  339  E  339
             
Sbjct  298  H  298



Lambda      K        H        a         alpha
   0.318    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00001252

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426080 pfam01148, CTP_transf_1, Cytidylyltransferase family. ...  183     2e-56


>CDD:426080 pfam01148, CTP_transf_1, Cytidylyltransferase family.  The members 
of this family are integral membrane protein cytidylyltransferases. 
The family includes phosphatidate cytidylyltransferase 
EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a 
dolichol kinase EC:2.7.1.108.
Length=264

 Score = 183 bits (467),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 93/329 (28%), Positives = 134/329 (41%), Gaps = 84/329 (26%)

Query  1    MIFLFFIAMFSGHIYIIGIVTAVQIISFKEVIAIANVPSREKNIRFTKSLNWYFLATTMY  60
            +I +F   ++ G +Y + +V AV I++  E+I +  +   +  +     L+WYFL   +Y
Sbjct  10   LIPIFLAILYLGGLYFMLLVAAVVILALWELIRLVRIKGPDYRLLLL--LSWYFLLLLLY  67

Query  61   FLYGESVIYYFKHILLVEKGLLPLAT---------HHRFISFTLYVMGFVFFVASLQKGH  111
            FLYGE +I  F  +LL+   L  L            HR     L +     F+ S     
Sbjct  68   FLYGEGLIALFGLVLLIIPVLWLLVLPVLSSKSKVFHRVALALLPLFYVGVFLLS-----  122

Query  112  YRFQFTQFAWTHMALYLIVVQAHFVMNNVFEGMIWFFLPASLVITNDIFAYVCGITFGRT  171
                                    ++ N FEG++WF L  +LV   DI AY  G  FG+T
Sbjct  123  ----------------------LLLITNPFEGLLWFLLLLALVWAADIGAYFFGKLFGKT  160

Query  172  QL-IQLSPKKTVEGFLGAWICTIIFGYFMTNILMRYKYFICPVNDLGSNVLTGLQCNPNP  230
            +L  ++SP KT EGF+G  +  ++ G     +L  Y                        
Sbjct  161  KLAPKISPNKTWEGFIGGIVGAVVVGLLFALVLGLYL-----------------------  197

Query  231  VFVPQPYSLPEWTGLSKTFYVEPMQFHILVFATFASLIAPFGGFFASGLKRTFKIKDFGE  290
                                  P  +H L+    ASL+ PFG    SG KR F IKD G+
Sbjct  198  ----------------------PSPWHALLLGLLASLVGPFGDLVESGFKRDFGIKDSGK  235

Query  291  SIPGHGGITDRMDCQFIMGFFSYMYYHSF  319
             IPGHGGI DR+D       F Y+Y   F
Sbjct  236  LIPGHGGILDRLDSLLFAAPFFYIYLRLF  264



Lambda      K        H        a         alpha
   0.332    0.146    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00001253

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432485 pfam12331, DUF3636, Protein of unknown function (DUF36...  244     2e-79


>CDD:432485 pfam12331, DUF3636, Protein of unknown function (DUF3636).  This 
domain family is found in eukaryotes, and is approximately 
160 amino acids in length.
Length=148

 Score = 244 bits (625),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 86/154 (56%), Positives = 108/154 (70%), Gaps = 6/154 (4%)

Query  306  DSTEALSLLYRMAYLCIHMERTMERFWRHMRYDFVLMMLNCSQPIRDITLMLNLLSTSIR  365
            D TE L LLY  A  C+     +ERFWR MRYDFVLMML+  QP+ DI LMLNLLSTS+ 
Sbjct  1    DVTECLELLYLAALGCLSDSEAIERFWRLMRYDFVLMMLSPKQPLDDIILMLNLLSTSVL  60

Query  366  AESFGSVQETQQDQLANENYIVDRVANLLSETPQPDEGQPPYTAADICSMRLQAMYFLTS  425
              SFG + + ++DQ   E YI+DRV NLLSE P+PDEG+PPYT A+IC +RL+A+  LTS
Sbjct  61   PTSFGPIPDDEEDQADVERYIIDRVTNLLSEPPRPDEGEPPYTPAEICDLRLEALRTLTS  120

Query  426  VAFNPVAPASEHGSSVIAQHPTVLARMIRAMHDE  459
             AF+P      HGS  +AQHP  + R++RA+ DE
Sbjct  121  FAFSP------HGSLQLAQHPNAIGRLVRALSDE  148



Lambda      K        H        a         alpha
   0.317    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 705370016


Query= TCONS_00001254

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426080 pfam01148, CTP_transf_1, Cytidylyltransferase family. ...  212     8e-67


>CDD:426080 pfam01148, CTP_transf_1, Cytidylyltransferase family.  The members 
of this family are integral membrane protein cytidylyltransferases. 
The family includes phosphatidate cytidylyltransferase 
EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a 
dolichol kinase EC:2.7.1.108.
Length=264

 Score = 212 bits (543),  Expect = 8e-67, Method: Composition-based stats.
 Identities = 96/338 (28%), Positives = 137/338 (41%), Gaps = 84/338 (25%)

Query  71   ITRTIWTFVMIFLFFIAMFSGHIYIIGIVTAVQIISFKEVIAIANVPSREKNIRFTKSLN  130
              R I   V+I +F   ++ G +Y + +V AV I++  E+I +  +   +  +     L+
Sbjct  1    KQRIITALVLIPIFLAILYLGGLYFMLLVAAVVILALWELIRLVRIKGPDYRLLLL--LS  58

Query  131  WYFLATTMYFLYGESVIYYFKHILLVEKGLLPLAT---------HHRFISFTLYVMGFVF  181
            WYFL   +YFLYGE +I  F  +LL+   L  L            HR     L +     
Sbjct  59   WYFLLLLLYFLYGEGLIALFGLVLLIIPVLWLLVLPVLSSKSKVFHRVALALLPLFYVGV  118

Query  182  FVASLQKGHYRFQFTQFAWTHMALYLIVVQAHFVMNNVFEGMIWFFLPASLVITNDIFAY  241
            F+ S                             ++ N FEG++WF L  +LV   DI AY
Sbjct  119  FLLS---------------------------LLLITNPFEGLLWFLLLLALVWAADIGAY  151

Query  242  VCGITFGRTQL-IQLSPKKTVEGFLGAWICTIIFGYFMTNILMRYKYFICPVNDLGSNVL  300
              G  FG+T+L  ++SP KT EGF+G  +  ++ G     +L  Y               
Sbjct  152  FFGKLFGKTKLAPKISPNKTWEGFIGGIVGAVVVGLLFALVLGLYL--------------  197

Query  301  TGLQCNPNPVFVPQPYSLPEWTGLSKTFYVEPMQFHILVFATFASLIAPFGGFFASGLKR  360
                                           P  +H L+    ASL+ PFG    SG KR
Sbjct  198  -------------------------------PSPWHALLLGLLASLVGPFGDLVESGFKR  226

Query  361  TFKIKDFGESIPGHGGITDRMDCQFIMGFFSYMYYHSF  398
             F IKD G+ IPGHGGI DR+D       F Y+Y   F
Sbjct  227  DFGIKDSGKLIPGHGGILDRLDSLLFAAPFFYIYLRLF  264



Lambda      K        H        a         alpha
   0.328    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 558268256


Query= TCONS_00001255

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426080 pfam01148, CTP_transf_1, Cytidylyltransferase family. ...  214     6e-67


>CDD:426080 pfam01148, CTP_transf_1, Cytidylyltransferase family.  The members 
of this family are integral membrane protein cytidylyltransferases. 
The family includes phosphatidate cytidylyltransferase 
EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a 
dolichol kinase EC:2.7.1.108.
Length=264

 Score = 214 bits (546),  Expect = 6e-67, Method: Composition-based stats.
 Identities = 96/338 (28%), Positives = 137/338 (41%), Gaps = 84/338 (25%)

Query  71   ITRTIWTFVMIFLFFIAMFSGHIYIIGIVTAVQIISFKEVIAIANVPSREKNIRFTKSLN  130
              R I   V+I +F   ++ G +Y + +V AV I++  E+I +  +   +  +     L+
Sbjct  1    KQRIITALVLIPIFLAILYLGGLYFMLLVAAVVILALWELIRLVRIKGPDYRLLLL--LS  58

Query  131  WYFLATTMYFLYGESVIYYFKHILLVEKGLLPLAT---------HHRFISFTLYVMGFVF  181
            WYFL   +YFLYGE +I  F  +LL+   L  L            HR     L +     
Sbjct  59   WYFLLLLLYFLYGEGLIALFGLVLLIIPVLWLLVLPVLSSKSKVFHRVALALLPLFYVGV  118

Query  182  FVASLQKGHYRFQFTQFAWTHMALYLIVVQAHFVMNNVFEGMIWFFLPASLVITNDIFAY  241
            F+ S                             ++ N FEG++WF L  +LV   DI AY
Sbjct  119  FLLS---------------------------LLLITNPFEGLLWFLLLLALVWAADIGAY  151

Query  242  VCGITFGRTQL-IQLSPKKTVEGFLGAWICTIIFGYFMTNILMRYKYFICPVNDLGSNVL  300
              G  FG+T+L  ++SP KT EGF+G  +  ++ G     +L  Y               
Sbjct  152  FFGKLFGKTKLAPKISPNKTWEGFIGGIVGAVVVGLLFALVLGLYL--------------  197

Query  301  TGLQCNPNPVFVPQPYSLPEWTGLSKTFYVEPMQFHILVFATFASLIAPFGGFFASGLKR  360
                                           P  +H L+    ASL+ PFG    SG KR
Sbjct  198  -------------------------------PSPWHALLLGLLASLVGPFGDLVESGFKR  226

Query  361  TFKIKDFGESIPGHGGITDRMDCQFIMGFFSYMYYHSF  398
             F IKD G+ IPGHGGI DR+D       F Y+Y   F
Sbjct  227  DFGIKDSGKLIPGHGGILDRLDSLLFAAPFFYIYLRLF  264



Lambda      K        H        a         alpha
   0.329    0.143    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 587408632


Query= TCONS_00001256

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400780 pfam08613, Cyclin, Cyclin. This family includes many d...  113     6e-31


>CDD:400780 pfam08613, Cyclin, Cyclin.  This family includes many different 
cyclin proteins. Members include the G1/S-specific cyclin 
pas1, and the phosphate system cyclin PHO80/PHO85.
Length=149

 Score = 113 bits (285),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 51/130 (39%), Positives = 71/130 (55%), Gaps = 15/130 (12%)

Query  237  DLVILISSMLMELIRFND---------KIPLNNGRLT----RFHSRSPPRISVQDYLQRL  283
             L+ +IS  L  LI  ND         + PL   +L      F+S++ P IS+  YL R+
Sbjct  2    KLIQMISGELDRLIANNDGTATASSDAQSPLEPSQLQSPELSFYSKAVPAISIGAYLSRI  61

Query  284  TTHATLSPPILLSMVYYIDRLC--ALYPAFTVSSLTIHRFLIASATVASKGLSDSFWTNK  341
                  SP +LLS + Y+DRL       AF V+S   HR LI + TVA+K LSD F++N 
Sbjct  62   QKFCPSSPAVLLSALIYLDRLVKRCDSEAFVVTSANAHRLLITAVTVATKFLSDGFYSNS  121

Query  342  TYARVGGISM  351
             +A+VGGIS+
Sbjct  122  RFAKVGGISL  131



Lambda      K        H        a         alpha
   0.314    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00007054

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400780 pfam08613, Cyclin, Cyclin. This family includes many d...  113     6e-31


>CDD:400780 pfam08613, Cyclin, Cyclin.  This family includes many different 
cyclin proteins. Members include the G1/S-specific cyclin 
pas1, and the phosphate system cyclin PHO80/PHO85.
Length=149

 Score = 113 bits (285),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 51/130 (39%), Positives = 71/130 (55%), Gaps = 15/130 (12%)

Query  237  DLVILISSMLMELIRFND---------KIPLNNGRLT----RFHSRSPPRISVQDYLQRL  283
             L+ +IS  L  LI  ND         + PL   +L      F+S++ P IS+  YL R+
Sbjct  2    KLIQMISGELDRLIANNDGTATASSDAQSPLEPSQLQSPELSFYSKAVPAISIGAYLSRI  61

Query  284  TTHATLSPPILLSMVYYIDRLC--ALYPAFTVSSLTIHRFLIASATVASKGLSDSFWTNK  341
                  SP +LLS + Y+DRL       AF V+S   HR LI + TVA+K LSD F++N 
Sbjct  62   QKFCPSSPAVLLSALIYLDRLVKRCDSEAFVVTSANAHRLLITAVTVATKFLSDGFYSNS  121

Query  342  TYARVGGISM  351
             +A+VGGIS+
Sbjct  122  RFAKVGGISL  131



Lambda      K        H        a         alpha
   0.314    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00001257

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00001260

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00007055

Length=1413


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1810229000


Query= TCONS_00001259

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00001258

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00001261

Length=1413


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1810229000


Query= TCONS_00007056

Length=1413


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1810229000


Query= TCONS_00001262

Length=1413


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 1810229000


Query= TCONS_00001263

Length=153
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369052 pfam06726, BC10, Bladder cancer-related protein BC10. ...  68.2    8e-17


>CDD:369052 pfam06726, BC10, Bladder cancer-related protein BC10.  This family 
consists of a series of short proteins of around 90 residues 
in length. The human protein BC10 has been implicated 
in bladder cancer where the transcription of the gene coding 
for this protein is nearly completely abolished in highly 
invasive transitional cell carcinomas (TCCs). The protein is 
a small globular protein containing two transmembrane helices, 
and it is a multiply edited transcript. All the editing 
sites are found in either the 5'-UTR or the N-terminal section 
of the protein, which is predicted to be outside the membrane. 
The three coding edits are all non-synonymous and predicted 
to encode exposed residues. The function of this family 
is unknown.
Length=65

 Score = 68.2 bits (167),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 27/65 (42%), Positives = 36/65 (55%), Gaps = 9/65 (14%)

Query  1   MFCLRSWLPLLFIP-------TNASPLFIISFVTLTYILHRPCIYCSALLLILF--ISSC  51
           MFCLR  +P+L IP        NASP+F + F+   Y+  RPC+YCS  L I    I   
Sbjct  1   MFCLRWNIPVLLIPVPSNRSLVNASPMFAVLFLIGFYLELRPCVYCSITLGIFIFAICRP  60

Query  52  HWADR  56
           +W+D 
Sbjct  61  NWSDF  65



Lambda      K        H        a         alpha
   0.326    0.137    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00007057

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369052 pfam06726, BC10, Bladder cancer-related protein BC10. ...  57.8    1e-12


>CDD:369052 pfam06726, BC10, Bladder cancer-related protein BC10.  This family 
consists of a series of short proteins of around 90 residues 
in length. The human protein BC10 has been implicated 
in bladder cancer where the transcription of the gene coding 
for this protein is nearly completely abolished in highly 
invasive transitional cell carcinomas (TCCs). The protein is 
a small globular protein containing two transmembrane helices, 
and it is a multiply edited transcript. All the editing 
sites are found in either the 5'-UTR or the N-terminal section 
of the protein, which is predicted to be outside the membrane. 
The three coding edits are all non-synonymous and predicted 
to encode exposed residues. The function of this family 
is unknown.
Length=65

 Score = 57.8 bits (140),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 22/60 (37%), Positives = 31/60 (52%), Gaps = 9/60 (15%)

Query  15  SWLPLLFIP-------TNASPLFIISFVTLTYILHRPCIYCSALLLILF--ISSCHWADR  65
             +P+L IP        NASP+F + F+   Y+  RPC+YCS  L I    I   +W+D 
Sbjct  6   WNIPVLLIPVPSNRSLVNASPMFAVLFLIGFYLELRPCVYCSITLGIFIFAICRPNWSDF  65



Lambda      K        H        a         alpha
   0.324    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00001264

Length=872
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      174     3e-49


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 174 bits (444),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 99/371 (27%), Positives = 145/371 (39%), Gaps = 78/371 (21%)

Query  406  RGLINTGNMCYMNSVLQILVSCIPFYQFLDHVGRRISHSVQSAFPMVDAMIMFMKEFRVI  465
             GL+N GN CYMNSVLQ L S  PF  +L     RIS    S     +  I  +   R  
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYL----LRISPL--SEDSRYNKDINLLCALR--  52

Query  466  DAAPSEEQLRLRLKPNELEDYGEAFTPDFVYEVIRQLSRFRDMQRGHQQDAQEFLGFLLE  525
                    L   L+ N       + +P    + + +L+   D     QQDAQEFL FLL+
Sbjct  53   -------DLFKALQKN---SKSSSVSPKMFKKSLGKLNP--DFSGYKQQDAQEFLLFLLD  100

Query  526  EMHEECVRAAKNASTTKPAASITAESIDKEEQSGDGWLEVGHKQKAAITRSSGHITQESP  585
             +HE+                                                    ES 
Sbjct  101  GLHEDLNGNHST-------------------------------------------ENESL  117

Query  586  ITRIFGGKIRSEFKVPG-NKTSVTLEPYQPLQLDI----GSPDIHNIVDALKGLTKPESI  640
            IT +F G+++S  K     + S T EP+  L L I          ++       +K E +
Sbjct  118  ITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEEL  177

Query  641  QGDFN---SSRGPNVTATKQIFIENLPPVLILHLKRFQYDSVTRGTQKIWKKIGYPLDLE  697
              +        G    A KQ+ I  LPPVLI+HLKRF Y+  T   +K+  ++ +PL+L+
Sbjct  178  DDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW--EKLNTEVEFPLELD  235

Query  698  IPREVFAPNKRNVMMAHGGLPKYRLIGVIYHHGRNASGGHYTVDVRRQDGREWIRLDDTV  757
            + R +    K         L  YRL+ V+ H G + S GHY   ++  +   W + DD  
Sbjct  236  LSRYLAEELKPK----TNNLQDYRLVAVVVHSG-SLSSGHYIAYIKAYENNRWYKFDDEK  290

Query  758  IRRIKSEDVAE  768
            +  +  E    
Sbjct  291  VTEVDEETAVL  301



Lambda      K        H        a         alpha
   0.313    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1115394378


Query= TCONS_00007059

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      141     5e-39


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 141 bits (357),  Expect = 5e-39, Method: Composition-based stats.
 Identities = 72/290 (25%), Positives = 113/290 (39%), Gaps = 60/290 (21%)

Query  71   GEAFTPDFVYEVIRQLSRFRDMQRGHQQDAQEFLGFLLEEMHEECVRAAKNASTTKPAAS  130
              + +P    + + +L+   D     QQDAQEFL FLL+ +HE+                
Sbjct  64   SSSVSPKMFKKSLGKLNP--DFSGYKQQDAQEFLLFLLDGLHEDLNGNHST---------  112

Query  131  ITAESIDKEEQSGDGWLEVGHKQKAAITRSSGHITQESPITRIFGGKIRSEFKVPG-NKT  189
                                                ES IT +F G+++S  K     + 
Sbjct  113  ----------------------------------ENESLITDLFRGQLKSRLKCLSCGEV  138

Query  190  SVTLEPYQPLQLDI----GSPDIHNIVDALKGLTKPESIQGDFN---SSRGPNVTATKQI  242
            S T EP+  L L I          ++       +K E +  +        G    A KQ+
Sbjct  139  SETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQL  198

Query  243  FIENLPPVLILHLKRFQYDSVTRGTQKIWKKIGYPLDLEIPREVFAPNKRNVMMAHGGLP  302
             I  LPPVLI+HLKRF Y+  T   +K+  ++ +PL+L++ R +    K         L 
Sbjct  199  KISRLPPVLIIHLKRFSYNRSTW--EKLNTEVEFPLELDLSRYLAEELKPK----TNNLQ  252

Query  303  KYRLIGVIYHHGRNASGGHYTVDVRRQDGREWIRLDDTVIRRIKSEDVAE  352
             YRL+ V+ H G + S GHY   ++  +   W + DD  +  +  E    
Sbjct  253  DYRLVAVVVHSG-SLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEETAVL  301



Lambda      K        H        a         alpha
   0.317    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00007060

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      119     1e-31


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 119 bits (300),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 56/196 (29%), Positives = 88/196 (45%), Gaps = 15/196 (8%)

Query  55   TQESPITRIFGGKIRSEFKVPG-NKTSVTLEPYQPLQLDI----GSPDIHNIVDALKGLT  109
              ES IT +F G+++S  K     + S T EP+  L L I          ++       +
Sbjct  113  ENESLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFS  172

Query  110  KPESIQGDFN---SSRGPNVTATKQIFIENLPPVLILHLKRFQYDSVTRGTQKIWKKIGY  166
            K E +  +        G    A KQ+ I  LPPVLI+HLKRF Y+  T   +K+  ++ +
Sbjct  173  KLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW--EKLNTEVEF  230

Query  167  PLDLEIPREVFAPNKRNVMMAHGGLPKYRLIGVIYHHGRNASGGHYTVDVRRQDGREWIR  226
            PL+L++ R +    K         L  YRL+ V+ H G + S GHY   ++  +   W +
Sbjct  231  PLELDLSRYLAEELKPK----TNNLQDYRLVAVVVHSG-SLSSGHYIAYIKAYENNRWYK  285

Query  227  LDDTVIRRIKSEDVAE  242
             DD  +  +  E    
Sbjct  286  FDDEKVTEVDEETAVL  301



Lambda      K        H        a         alpha
   0.313    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00007061

Length=891
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      163     4e-45


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 163 bits (414),  Expect = 4e-45, Method: Composition-based stats.
 Identities = 99/390 (25%), Positives = 145/390 (37%), Gaps = 97/390 (25%)

Query  406  RGLINTGNMCYMNSVSWHAIRFADLHLLNAREQVLQILVSCIPFYQFLDHVGRRISHSVQ  465
             GL+N GN CYMNSV                   LQ L S  PF  +L     RIS    
Sbjct  1    TGLVNLGNTCYMNSV-------------------LQSLFSIPPFRDYL----LRISPL--  35

Query  466  SAFPMVDAMIMFMKEFRVIDAAPSEEQLRLRLKPNELEDYGEAFTPDFVYEVIRQLSRFR  525
            S     +  I  +   R          L   L+ N       + +P    + + +L+   
Sbjct  36   SEDSRYNKDINLLCALR---------DLFKALQKN---SKSSSVSPKMFKKSLGKLNP--  81

Query  526  DMQRGHQQDAQEFLGFLLEEMHEECVRAAKNASTTKPAASITAESIDKEEQSGDGWLEVG  585
            D     QQDAQEFL FLL+ +HE+                                    
Sbjct  82   DFSGYKQQDAQEFLLFLLDGLHEDLNGNHST-----------------------------  112

Query  586  HKQKAAITRSSGHITQESPITRIFGGKIRSEFKVPG-NKTSVTLEPYQPLQLDI----GS  640
                            ES IT +F G+++S  K     + S T EP+  L L I      
Sbjct  113  --------------ENESLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAE  158

Query  641  PDIHNIVDALKGLTKPESIQGDFN---SSRGPNVTATKQIFIENLPPVLILHLKRFQYDS  697
                ++       +K E +  +        G    A KQ+ I  LPPVLI+HLKRF Y+ 
Sbjct  159  LKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNR  218

Query  698  VTRGTQKIWKKIGYPLDLEIPREVFAPNKRNVMMAHGGLPKYRLIGVIYHHGRNASGGHY  757
             T   +K+  ++ +PL+L++ R +    K         L  YRL+ V+ H G + S GHY
Sbjct  219  STW--EKLNTEVEFPLELDLSRYLAEELKPK----TNNLQDYRLVAVVVHSG-SLSSGHY  271

Query  758  TVDVRRQDGREWIRLDDTVIRRIKSEDVAE  787
               ++  +   W + DD  +  +  E    
Sbjct  272  IAYIKAYENNRWYKFDDEKVTEVDEETAVL  301



Lambda      K        H        a         alpha
   0.314    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1142669144


Query= TCONS_00001266

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00001265

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00001267

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00001268

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00001269

Length=208


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00001270

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             355     1e-122


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 355 bits (913),  Expect = 1e-122, Method: Composition-based stats.
 Identities = 126/342 (37%), Positives = 174/342 (51%), Gaps = 30/342 (9%)

Query  14   ATKNVSKKAWAYYYSASDDKITKRFNTEVYRSIILRPRVFIDCTKCDLDTSFLGHKLGMP  73
            A K + + A+ Y    + D++T R N   +  I LRPRV  D +  DL T+ LG +L +P
Sbjct  1    ARKRLPRFAFDYLDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSNRDLSTTLLGQRLSLP  60

Query  74   IYVSPAAMARLGHPAGEAGIAEACRSFGAMQIISNNASMTPEQIVKDAAPDQVFGWQIYV  133
              ++P  M  L HP GE  +A A  + G   ++S  +S + E++   AA      +Q+YV
Sbjct  61   FGIAPVGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEVA--AAAGGPLWFQLYV  118

Query  134  QIDRKKSEAMLARINKLKAIKFIVLTLDAPVPGKREDDERGNNVAASMPVPSAAKAADKA  193
              DR+ +E +L R       K +VLT+D PV G+RE D R         +P      +  
Sbjct  119  PRDRELTEDLLERAEAAGY-KALVLTVDTPVLGRRERDLR-----NGFTLPPRLTPRNLL  172

Query  194  ADGTPIVSQPGGVGKQLFAGT------------DPSLTWKDTLPWLAKHTDLPIVLKGLQ  241
                 +   P      L  G             DP+LTW D L WL +    P+V+KG+ 
Sbjct  173  D----LALHPRWALGVLRRGGAGGAAAFVGSQFDPALTWDD-LAWLRERWKGPLVVKGIL  227

Query  242  THEDAYIASLHTPQVKGIILSNHGGRALDTAPPAVHTLLEIRKYCPEVFDKLDVWVDGGI  301
            + EDA  A      V GI++SNHGGR LD AP  +  L EI         ++ V VDGGI
Sbjct  228  SPEDAKRAVEAG--VDGIVVSNHGGRQLDGAPATIDALPEIVAAVG---GRIPVLVDGGI  282

Query  302  RRGTDVVKALCLGAKAVGIGRPALWGLGAGGVDGVKRTLQSM  343
            RRGTDV+KAL LGA AV +GRP L+GL AGG  GV   L+ +
Sbjct  283  RRGTDVLKALALGADAVLLGRPFLYGLAAGGEAGVAHALEIL  324



Lambda      K        H        a         alpha
   0.318    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00007064

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             355     1e-122


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 355 bits (913),  Expect = 1e-122, Method: Composition-based stats.
 Identities = 126/342 (37%), Positives = 174/342 (51%), Gaps = 30/342 (9%)

Query  14   ATKNVSKKAWAYYYSASDDKITKRFNTEVYRSIILRPRVFIDCTKCDLDTSFLGHKLGMP  73
            A K + + A+ Y    + D++T R N   +  I LRPRV  D +  DL T+ LG +L +P
Sbjct  1    ARKRLPRFAFDYLDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSNRDLSTTLLGQRLSLP  60

Query  74   IYVSPAAMARLGHPAGEAGIAEACRSFGAMQIISNNASMTPEQIVKDAAPDQVFGWQIYV  133
              ++P  M  L HP GE  +A A  + G   ++S  +S + E++   AA      +Q+YV
Sbjct  61   FGIAPVGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEVA--AAAGGPLWFQLYV  118

Query  134  QIDRKKSEAMLARINKLKAIKFIVLTLDAPVPGKREDDERGNNVAASMPVPSAAKAADKA  193
              DR+ +E +L R       K +VLT+D PV G+RE D R         +P      +  
Sbjct  119  PRDRELTEDLLERAEAAGY-KALVLTVDTPVLGRRERDLR-----NGFTLPPRLTPRNLL  172

Query  194  ADGTPIVSQPGGVGKQLFAGT------------DPSLTWKDTLPWLAKHTDLPIVLKGLQ  241
                 +   P      L  G             DP+LTW D L WL +    P+V+KG+ 
Sbjct  173  D----LALHPRWALGVLRRGGAGGAAAFVGSQFDPALTWDD-LAWLRERWKGPLVVKGIL  227

Query  242  THEDAYIASLHTPQVKGIILSNHGGRALDTAPPAVHTLLEIRKYCPEVFDKLDVWVDGGI  301
            + EDA  A      V GI++SNHGGR LD AP  +  L EI         ++ V VDGGI
Sbjct  228  SPEDAKRAVEAG--VDGIVVSNHGGRQLDGAPATIDALPEIVAAVG---GRIPVLVDGGI  282

Query  302  RRGTDVVKALCLGAKAVGIGRPALWGLGAGGVDGVKRTLQSM  343
            RRGTDV+KAL LGA AV +GRP L+GL AGG  GV   L+ +
Sbjct  283  RRGTDVLKALALGADAVLLGRPFLYGLAAGGEAGVAHALEIL  324



Lambda      K        H        a         alpha
   0.318    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00001271

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00001273

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             355     1e-122


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 355 bits (913),  Expect = 1e-122, Method: Composition-based stats.
 Identities = 126/342 (37%), Positives = 174/342 (51%), Gaps = 30/342 (9%)

Query  14   ATKNVSKKAWAYYYSASDDKITKRFNTEVYRSIILRPRVFIDCTKCDLDTSFLGHKLGMP  73
            A K + + A+ Y    + D++T R N   +  I LRPRV  D +  DL T+ LG +L +P
Sbjct  1    ARKRLPRFAFDYLDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSNRDLSTTLLGQRLSLP  60

Query  74   IYVSPAAMARLGHPAGEAGIAEACRSFGAMQIISNNASMTPEQIVKDAAPDQVFGWQIYV  133
              ++P  M  L HP GE  +A A  + G   ++S  +S + E++   AA      +Q+YV
Sbjct  61   FGIAPVGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEVA--AAAGGPLWFQLYV  118

Query  134  QIDRKKSEAMLARINKLKAIKFIVLTLDAPVPGKREDDERGNNVAASMPVPSAAKAADKA  193
              DR+ +E +L R       K +VLT+D PV G+RE D R         +P      +  
Sbjct  119  PRDRELTEDLLERAEAAGY-KALVLTVDTPVLGRRERDLR-----NGFTLPPRLTPRNLL  172

Query  194  ADGTPIVSQPGGVGKQLFAGT------------DPSLTWKDTLPWLAKHTDLPIVLKGLQ  241
                 +   P      L  G             DP+LTW D L WL +    P+V+KG+ 
Sbjct  173  D----LALHPRWALGVLRRGGAGGAAAFVGSQFDPALTWDD-LAWLRERWKGPLVVKGIL  227

Query  242  THEDAYIASLHTPQVKGIILSNHGGRALDTAPPAVHTLLEIRKYCPEVFDKLDVWVDGGI  301
            + EDA  A      V GI++SNHGGR LD AP  +  L EI         ++ V VDGGI
Sbjct  228  SPEDAKRAVEAG--VDGIVVSNHGGRQLDGAPATIDALPEIVAAVG---GRIPVLVDGGI  282

Query  302  RRGTDVVKALCLGAKAVGIGRPALWGLGAGGVDGVKRTLQSM  343
            RRGTDV+KAL LGA AV +GRP L+GL AGG  GV   L+ +
Sbjct  283  RRGTDVLKALALGADAVLLGRPFLYGLAAGGEAGVAHALEIL  324



Lambda      K        H        a         alpha
   0.318    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00001272

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             355     1e-122


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 355 bits (913),  Expect = 1e-122, Method: Composition-based stats.
 Identities = 126/342 (37%), Positives = 174/342 (51%), Gaps = 30/342 (9%)

Query  14   ATKNVSKKAWAYYYSASDDKITKRFNTEVYRSIILRPRVFIDCTKCDLDTSFLGHKLGMP  73
            A K + + A+ Y    + D++T R N   +  I LRPRV  D +  DL T+ LG +L +P
Sbjct  1    ARKRLPRFAFDYLDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSNRDLSTTLLGQRLSLP  60

Query  74   IYVSPAAMARLGHPAGEAGIAEACRSFGAMQIISNNASMTPEQIVKDAAPDQVFGWQIYV  133
              ++P  M  L HP GE  +A A  + G   ++S  +S + E++   AA      +Q+YV
Sbjct  61   FGIAPVGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEVA--AAAGGPLWFQLYV  118

Query  134  QIDRKKSEAMLARINKLKAIKFIVLTLDAPVPGKREDDERGNNVAASMPVPSAAKAADKA  193
              DR+ +E +L R       K +VLT+D PV G+RE D R         +P      +  
Sbjct  119  PRDRELTEDLLERAEAAGY-KALVLTVDTPVLGRRERDLR-----NGFTLPPRLTPRNLL  172

Query  194  ADGTPIVSQPGGVGKQLFAGT------------DPSLTWKDTLPWLAKHTDLPIVLKGLQ  241
                 +   P      L  G             DP+LTW D L WL +    P+V+KG+ 
Sbjct  173  D----LALHPRWALGVLRRGGAGGAAAFVGSQFDPALTWDD-LAWLRERWKGPLVVKGIL  227

Query  242  THEDAYIASLHTPQVKGIILSNHGGRALDTAPPAVHTLLEIRKYCPEVFDKLDVWVDGGI  301
            + EDA  A      V GI++SNHGGR LD AP  +  L EI         ++ V VDGGI
Sbjct  228  SPEDAKRAVEAG--VDGIVVSNHGGRQLDGAPATIDALPEIVAAVG---GRIPVLVDGGI  282

Query  302  RRGTDVVKALCLGAKAVGIGRPALWGLGAGGVDGVKRTLQSM  343
            RRGTDV+KAL LGA AV +GRP L+GL AGG  GV   L+ +
Sbjct  283  RRGTDVLKALALGADAVLLGRPFLYGLAAGGEAGVAHALEIL  324



Lambda      K        H        a         alpha
   0.318    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00007066

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             355     1e-122


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 355 bits (913),  Expect = 1e-122, Method: Composition-based stats.
 Identities = 126/342 (37%), Positives = 174/342 (51%), Gaps = 30/342 (9%)

Query  14   ATKNVSKKAWAYYYSASDDKITKRFNTEVYRSIILRPRVFIDCTKCDLDTSFLGHKLGMP  73
            A K + + A+ Y    + D++T R N   +  I LRPRV  D +  DL T+ LG +L +P
Sbjct  1    ARKRLPRFAFDYLDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSNRDLSTTLLGQRLSLP  60

Query  74   IYVSPAAMARLGHPAGEAGIAEACRSFGAMQIISNNASMTPEQIVKDAAPDQVFGWQIYV  133
              ++P  M  L HP GE  +A A  + G   ++S  +S + E++   AA      +Q+YV
Sbjct  61   FGIAPVGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEVA--AAAGGPLWFQLYV  118

Query  134  QIDRKKSEAMLARINKLKAIKFIVLTLDAPVPGKREDDERGNNVAASMPVPSAAKAADKA  193
              DR+ +E +L R       K +VLT+D PV G+RE D R         +P      +  
Sbjct  119  PRDRELTEDLLERAEAAGY-KALVLTVDTPVLGRRERDLR-----NGFTLPPRLTPRNLL  172

Query  194  ADGTPIVSQPGGVGKQLFAGT------------DPSLTWKDTLPWLAKHTDLPIVLKGLQ  241
                 +   P      L  G             DP+LTW D L WL +    P+V+KG+ 
Sbjct  173  D----LALHPRWALGVLRRGGAGGAAAFVGSQFDPALTWDD-LAWLRERWKGPLVVKGIL  227

Query  242  THEDAYIASLHTPQVKGIILSNHGGRALDTAPPAVHTLLEIRKYCPEVFDKLDVWVDGGI  301
            + EDA  A      V GI++SNHGGR LD AP  +  L EI         ++ V VDGGI
Sbjct  228  SPEDAKRAVEAG--VDGIVVSNHGGRQLDGAPATIDALPEIVAAVG---GRIPVLVDGGI  282

Query  302  RRGTDVVKALCLGAKAVGIGRPALWGLGAGGVDGVKRTLQSM  343
            RRGTDV+KAL LGA AV +GRP L+GL AGG  GV   L+ +
Sbjct  283  RRGTDVLKALALGADAVLLGRPFLYGLAAGGEAGVAHALEIL  324



Lambda      K        H        a         alpha
   0.318    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00001274

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00007068

Length=562
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzym...  233     3e-74


>CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase.  This enzyme occurs 
as a bifunctional enzyme with fructose-2,6-bisphosphatase. 
The bifunctional enzyme catalyzes both the synthesis and degradation 
of fructose-2,6-bisphosphate, a potent regulator 
of glycolysis. This enzyme contains a P-loop motif.
Length=223

 Score = 233 bits (597),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 107/335 (32%), Positives = 149/335 (44%), Gaps = 113/335 (34%)

Query  125  PDGRIAQRDLGSKLVIVMVGLPARGKSYVTKKLARYLNWLQHDTEIFNVGERRRVAAGKS  184
            P G        SK +IVMVGLPARGK+Y++KKL RYLNWL   T++FNVGE RR A    
Sbjct  1    PRGSTGPNFTNSKTMIVMVGLPARGKTYISKKLTRYLNWLGVPTKVFNVGEYRRSAVKA-  59

Query  185  PSPAKAMGPRDKRASVHKDLVDSVRRLSVSVGTMNTQPSQTEISPPESATSPPEINSLPP  244
                                                                        
Sbjct       ------------------------------------------------------------  

Query  245  PVVTAKILVNGQEEDPSMQQEGSTIITSIDAGPDNQQTVTEASPEPMDQSASFFDPQNER  304
                                                             +  FF P N  
Sbjct  60   -----------------------------------------------YSNYEFFRPDNPE  72

Query  305  AVKLREQVALDTLDELLDYILVQGGSVGILDATNSTLERRKLIVDHIRQVAGPELGVLFL  364
            A+K+REQ AL  L ++L Y+  + G V I DATN+T ERRK I+D   +     L V FL
Sbjct  73   AMKIREQCALAALKDVLAYLNEESGQVAIFDATNTTRERRKNILDFAEENG---LKVFFL  129

Query  365  ESSCVDPELLEANMRLKLSG-PDYKGQDPVKSLEDFKKRVALYEKSYVPLGEYEEKHGMA  423
            ES C DPE++  N++L     PDYKG+ P ++++DF KR+  YEK Y PL +  ++  ++
Sbjct  130  ESICNDPEIIARNIKLVKFSSPDYKGKPPEEAIDDFMKRLECYEKQYEPLDDEHDED-LS  188

Query  424  YIRMIDVGRKIVSHQTHGFLSSQVVYYLLNFNLSP  458
            YI+MI+VG+ IV +   G+L S++VYYL+N +++P
Sbjct  189  YIKMINVGQSIVVNNVQGYLQSRIVYYLMNIHVTP  223



Lambda      K        H        a         alpha
   0.313    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 702381160


Query= TCONS_00007067

Length=562
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzym...  233     3e-74


>CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase.  This enzyme occurs 
as a bifunctional enzyme with fructose-2,6-bisphosphatase. 
The bifunctional enzyme catalyzes both the synthesis and degradation 
of fructose-2,6-bisphosphate, a potent regulator 
of glycolysis. This enzyme contains a P-loop motif.
Length=223

 Score = 233 bits (597),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 107/335 (32%), Positives = 149/335 (44%), Gaps = 113/335 (34%)

Query  125  PDGRIAQRDLGSKLVIVMVGLPARGKSYVTKKLARYLNWLQHDTEIFNVGERRRVAAGKS  184
            P G        SK +IVMVGLPARGK+Y++KKL RYLNWL   T++FNVGE RR A    
Sbjct  1    PRGSTGPNFTNSKTMIVMVGLPARGKTYISKKLTRYLNWLGVPTKVFNVGEYRRSAVKA-  59

Query  185  PSPAKAMGPRDKRASVHKDLVDSVRRLSVSVGTMNTQPSQTEISPPESATSPPEINSLPP  244
                                                                        
Sbjct       ------------------------------------------------------------  

Query  245  PVVTAKILVNGQEEDPSMQQEGSTIITSIDAGPDNQQTVTEASPEPMDQSASFFDPQNER  304
                                                             +  FF P N  
Sbjct  60   -----------------------------------------------YSNYEFFRPDNPE  72

Query  305  AVKLREQVALDTLDELLDYILVQGGSVGILDATNSTLERRKLIVDHIRQVAGPELGVLFL  364
            A+K+REQ AL  L ++L Y+  + G V I DATN+T ERRK I+D   +     L V FL
Sbjct  73   AMKIREQCALAALKDVLAYLNEESGQVAIFDATNTTRERRKNILDFAEENG---LKVFFL  129

Query  365  ESSCVDPELLEANMRLKLSG-PDYKGQDPVKSLEDFKKRVALYEKSYVPLGEYEEKHGMA  423
            ES C DPE++  N++L     PDYKG+ P ++++DF KR+  YEK Y PL +  ++  ++
Sbjct  130  ESICNDPEIIARNIKLVKFSSPDYKGKPPEEAIDDFMKRLECYEKQYEPLDDEHDED-LS  188

Query  424  YIRMIDVGRKIVSHQTHGFLSSQVVYYLLNFNLSP  458
            YI+MI+VG+ IV +   G+L S++VYYL+N +++P
Sbjct  189  YIKMINVGQSIVVNNVQGYLQSRIVYYLMNIHVTP  223



Lambda      K        H        a         alpha
   0.313    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 702381160


Query= TCONS_00001275

Length=708
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzym...  233     9e-73
CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  124     4e-33


>CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase.  This enzyme occurs 
as a bifunctional enzyme with fructose-2,6-bisphosphatase. 
The bifunctional enzyme catalyzes both the synthesis and degradation 
of fructose-2,6-bisphosphate, a potent regulator 
of glycolysis. This enzyme contains a P-loop motif.
Length=223

 Score = 233 bits (596),  Expect = 9e-73, Method: Composition-based stats.
 Identities = 107/335 (32%), Positives = 149/335 (44%), Gaps = 113/335 (34%)

Query  125  PDGRIAQRDLGSKLVIVMVGLPARGKSYVTKKLARYLNWLQHDTEIFNVGERRRVAAGKS  184
            P G        SK +IVMVGLPARGK+Y++KKL RYLNWL   T++FNVGE RR A    
Sbjct  1    PRGSTGPNFTNSKTMIVMVGLPARGKTYISKKLTRYLNWLGVPTKVFNVGEYRRSAVKA-  59

Query  185  PSPAKAMGPRDKRASVHKDLVDSVRRLSVSVGTMNTQPSQTEISPPESATSPPEINSLPP  244
                                                                        
Sbjct       ------------------------------------------------------------  

Query  245  PVVTAKILVNGQEEDPSMQQEGSTIITSIDAGPDNQQTVTEASPEPMDQSASFFDPQNER  304
                                                             +  FF P N  
Sbjct  60   -----------------------------------------------YSNYEFFRPDNPE  72

Query  305  AVKLREQVALDTLDELLDYILVQGGSVGILDATNSTLERRKLIVDHIRQVAGPELGVLFL  364
            A+K+REQ AL  L ++L Y+  + G V I DATN+T ERRK I+D   +     L V FL
Sbjct  73   AMKIREQCALAALKDVLAYLNEESGQVAIFDATNTTRERRKNILDFAEENG---LKVFFL  129

Query  365  ESSCVDPELLEANMRLKLSG-PDYKGQDPVKSLEDFKKRVALYEKSYVPLGEYEEKHGMA  423
            ES C DPE++  N++L     PDYKG+ P ++++DF KR+  YEK Y PL +  ++  ++
Sbjct  130  ESICNDPEIIARNIKLVKFSSPDYKGKPPEEAIDDFMKRLECYEKQYEPLDDEHDED-LS  188

Query  424  YIRMIDVGRKIVSHQTHGFLSSQVVYYLLNFNLSP  458
            YI+MI+VG+ IV +   G+L S++VYYL+N +++P
Sbjct  189  YIKMINVGQSIVVNNVQGYLQSRIVYYLMNIHVTP  223


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 124 bits (314),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 95/230 (41%), Gaps = 44/230 (19%)

Query  461  IWITRHGESKDNQLGRIGG--DSEISENGRRYAKALTRFIDYQRHQWEQLQQQKNMLRHF  518
            +++ RHGE++ N  GR  G  DS ++E GR  A+AL                    L   
Sbjct  1    LYLVRHGETEWNLEGRFQGRTDSPLTELGREQAEALAER-----------------LAGE  43

Query  519  PPRPGDSTPPNPSYIPRDRPRNFCVWSSMMRRSVQTVEGFNED-EYDVKQMKMLDELYAG  577
            P                       ++SS ++R+ QT E   E     V+    L E+  G
Sbjct  44   PFD--------------------AIYSSPLKRARQTAEIIAEALGLPVEIDPRLREIDFG  83

Query  578  EMEGMTYSEIREKYPEEYAIRKKNKLFYRYPGPGGEGYLDVINRLRAVI--IEVERMTDH  635
            + EG+T+ EI E+YPEEY     +     Y  PGGE   DV  R+RA +  +        
Sbjct  84   DWEGLTFEEIAERYPEEYDAWLAD--PADYRPPGGESLADVRARVRAALEELAARHPGKT  141

Query  636  VLIVTHRSVARVLLAYFRGLKRDEVADLDVPLGMLYMLEPKPYGVDFKAY  685
            VL+V+H  V R LLA+  GL  + +    +    L +LE    G      
Sbjct  142  VLVVSHGGVIRALLAHLLGLPLEALRRFPLDNASLSILEFDGGGWVLVLL  191



Lambda      K        H        a         alpha
   0.315    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906995850


Query= TCONS_00007069

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzym...  218     2e-68
CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  123     3e-33


>CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase.  This enzyme occurs 
as a bifunctional enzyme with fructose-2,6-bisphosphatase. 
The bifunctional enzyme catalyzes both the synthesis and degradation 
of fructose-2,6-bisphosphate, a potent regulator 
of glycolysis. This enzyme contains a P-loop motif.
Length=223

 Score = 218 bits (558),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 101/318 (32%), Positives = 142/318 (45%), Gaps = 113/318 (36%)

Query  1    MVGLPARGKSYVTKKLARYLNWLQHDTEIFNVGERRRVAAGKSPSPAKAMGPRDKRASVH  60
            MVGLPARGK+Y++KKL RYLNWL   T++FNVGE RR A                     
Sbjct  18   MVGLPARGKTYISKKLTRYLNWLGVPTKVFNVGEYRRSAVKA------------------  59

Query  61   KDLVDSVRRLSVSVGTMNTQPSQTEISPPESATSPPEINSLPPPVVTAKILVNGQEEDPS  120
                                                                        
Sbjct       ------------------------------------------------------------  

Query  121  MQQEGSTIITSIDAGPDNQQTVTEASPEPMDQSASFFDPQNERAVKLREQVALDTLDELL  180
                                            +  FF P N  A+K+REQ AL  L ++L
Sbjct  60   ------------------------------YSNYEFFRPDNPEAMKIREQCALAALKDVL  89

Query  181  DYILVQGGSVGILDATNSTLERRKLIVDHIRQVAGPELGVLFLESSCVDPELLEANMRLK  240
             Y+  + G V I DATN+T ERRK I+D   +     L V FLES C DPE++  N++L 
Sbjct  90   AYLNEESGQVAIFDATNTTRERRKNILDFAEENG---LKVFFLESICNDPEIIARNIKLV  146

Query  241  LSG-PDYKGQDPVKSLEDFKKRVALYEKSYVPLGEYEEKHGMAYIRMIDVGRKIVSHQTH  299
                PDYKG+ P ++++DF KR+  YEK Y PL +  ++  ++YI+MI+VG+ IV +   
Sbjct  147  KFSSPDYKGKPPEEAIDDFMKRLECYEKQYEPLDDEHDED-LSYIKMINVGQSIVVNNVQ  205

Query  300  GFLSSQVVYYLLNFNLSP  317
            G+L S++VYYL+N +++P
Sbjct  206  GYLQSRIVYYLMNIHVTP  223


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 123 bits (311),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 95/230 (41%), Gaps = 44/230 (19%)

Query  320  IWITRHGESKDNQLGRIGG--DSEISENGRRYAKALTRFIDYQRHQWEQLQQQKNMLRHF  377
            +++ RHGE++ N  GR  G  DS ++E GR  A+AL                    L   
Sbjct  1    LYLVRHGETEWNLEGRFQGRTDSPLTELGREQAEALAER-----------------LAGE  43

Query  378  PPRPGDSTPPNPSYIPRDRPRNFCVWSSMMRRSVQTVEGFNED-EYDVKQMKMLDELYAG  436
            P                       ++SS ++R+ QT E   E     V+    L E+  G
Sbjct  44   PFD--------------------AIYSSPLKRARQTAEIIAEALGLPVEIDPRLREIDFG  83

Query  437  EMEGMTYSEIREKYPEEYAIRKKNKLFYRYPGPGGEGYLDVINRLRAVI--IEVERMTDH  494
            + EG+T+ EI E+YPEEY     +     Y  PGGE   DV  R+RA +  +        
Sbjct  84   DWEGLTFEEIAERYPEEYDAWLAD--PADYRPPGGESLADVRARVRAALEELAARHPGKT  141

Query  495  VLIVTHRSVARVLLAYFRGLKRDEVADLDVPLGMLYMLEPKPYGVDFKAY  544
            VL+V+H  V R LLA+  GL  + +    +    L +LE    G      
Sbjct  142  VLVVSHGGVIRALLAHLLGLPLEALRRFPLDNASLSILEFDGGGWVLVLL  191



Lambda      K        H        a         alpha
   0.317    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 709853300


Query= TCONS_00001276

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzym...  218     2e-68
CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  123     3e-33


>CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase.  This enzyme occurs 
as a bifunctional enzyme with fructose-2,6-bisphosphatase. 
The bifunctional enzyme catalyzes both the synthesis and degradation 
of fructose-2,6-bisphosphate, a potent regulator 
of glycolysis. This enzyme contains a P-loop motif.
Length=223

 Score = 218 bits (558),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 101/318 (32%), Positives = 142/318 (45%), Gaps = 113/318 (36%)

Query  1    MVGLPARGKSYVTKKLARYLNWLQHDTEIFNVGERRRVAAGKSPSPAKAMGPRDKRASVH  60
            MVGLPARGK+Y++KKL RYLNWL   T++FNVGE RR A                     
Sbjct  18   MVGLPARGKTYISKKLTRYLNWLGVPTKVFNVGEYRRSAVKA------------------  59

Query  61   KDLVDSVRRLSVSVGTMNTQPSQTEISPPESATSPPEINSLPPPVVTAKILVNGQEEDPS  120
                                                                        
Sbjct       ------------------------------------------------------------  

Query  121  MQQEGSTIITSIDAGPDNQQTVTEASPEPMDQSASFFDPQNERAVKLREQVALDTLDELL  180
                                            +  FF P N  A+K+REQ AL  L ++L
Sbjct  60   ------------------------------YSNYEFFRPDNPEAMKIREQCALAALKDVL  89

Query  181  DYILVQGGSVGILDATNSTLERRKLIVDHIRQVAGPELGVLFLESSCVDPELLEANMRLK  240
             Y+  + G V I DATN+T ERRK I+D   +     L V FLES C DPE++  N++L 
Sbjct  90   AYLNEESGQVAIFDATNTTRERRKNILDFAEENG---LKVFFLESICNDPEIIARNIKLV  146

Query  241  LSG-PDYKGQDPVKSLEDFKKRVALYEKSYVPLGEYEEKHGMAYIRMIDVGRKIVSHQTH  299
                PDYKG+ P ++++DF KR+  YEK Y PL +  ++  ++YI+MI+VG+ IV +   
Sbjct  147  KFSSPDYKGKPPEEAIDDFMKRLECYEKQYEPLDDEHDED-LSYIKMINVGQSIVVNNVQ  205

Query  300  GFLSSQVVYYLLNFNLSP  317
            G+L S++VYYL+N +++P
Sbjct  206  GYLQSRIVYYLMNIHVTP  223


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 123 bits (311),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 95/230 (41%), Gaps = 44/230 (19%)

Query  320  IWITRHGESKDNQLGRIGG--DSEISENGRRYAKALTRFIDYQRHQWEQLQQQKNMLRHF  377
            +++ RHGE++ N  GR  G  DS ++E GR  A+AL                    L   
Sbjct  1    LYLVRHGETEWNLEGRFQGRTDSPLTELGREQAEALAER-----------------LAGE  43

Query  378  PPRPGDSTPPNPSYIPRDRPRNFCVWSSMMRRSVQTVEGFNED-EYDVKQMKMLDELYAG  436
            P                       ++SS ++R+ QT E   E     V+    L E+  G
Sbjct  44   PFD--------------------AIYSSPLKRARQTAEIIAEALGLPVEIDPRLREIDFG  83

Query  437  EMEGMTYSEIREKYPEEYAIRKKNKLFYRYPGPGGEGYLDVINRLRAVI--IEVERMTDH  494
            + EG+T+ EI E+YPEEY     +     Y  PGGE   DV  R+RA +  +        
Sbjct  84   DWEGLTFEEIAERYPEEYDAWLAD--PADYRPPGGESLADVRARVRAALEELAARHPGKT  141

Query  495  VLIVTHRSVARVLLAYFRGLKRDEVADLDVPLGMLYMLEPKPYGVDFKAY  544
            VL+V+H  V R LLA+  GL  + +    +    L +LE    G      
Sbjct  142  VLVVSHGGVIRALLAHLLGLPLEALRRFPLDNASLSILEFDGGGWVLVLL  191



Lambda      K        H        a         alpha
   0.317    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 709853300


Query= TCONS_00001277

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzym...  194     2e-59
CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  123     2e-33


>CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase.  This enzyme occurs 
as a bifunctional enzyme with fructose-2,6-bisphosphatase. 
The bifunctional enzyme catalyzes both the synthesis and degradation 
of fructose-2,6-bisphosphate, a potent regulator 
of glycolysis. This enzyme contains a P-loop motif.
Length=223

 Score = 194 bits (496),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 109/168 (65%), Gaps = 5/168 (3%)

Query  128  DQSASFFDPQNERAVKLREQVALDTLDELLDYILVQGGSVGILDATNSTLERRKLIVDHI  187
              +  FF P N  A+K+REQ AL  L ++L Y+  + G V I DATN+T ERRK I+D  
Sbjct  60   YSNYEFFRPDNPEAMKIREQCALAALKDVLAYLNEESGQVAIFDATNTTRERRKNILDFA  119

Query  188  RQVAGPELGVLFLESSCVDPELLEANMRLKLSG-PDYKGQDPVKSLEDFKKRVALYEKSY  246
             +     L V FLES C DPE++  N++L     PDYKG+ P ++++DF KR+  YEK Y
Sbjct  120  EENG---LKVFFLESICNDPEIIARNIKLVKFSSPDYKGKPPEEAIDDFMKRLECYEKQY  176

Query  247  VPLGEYEEKHGMAYIRMIDVGRKIVSHQTHGFLSSQVVYYLLNFNLSP  294
             PL +  ++  ++YI+MI+VG+ IV +   G+L S++VYYL+N +++P
Sbjct  177  EPLDDEHDED-LSYIKMINVGQSIVVNNVQGYLQSRIVYYLMNIHVTP  223


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 123 bits (312),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 95/230 (41%), Gaps = 44/230 (19%)

Query  297  IWITRHGESKDNQLGRIGG--DSEISENGRRYAKALTRFIDYQRHQWEQLQQQKNMLRHF  354
            +++ RHGE++ N  GR  G  DS ++E GR  A+AL                    L   
Sbjct  1    LYLVRHGETEWNLEGRFQGRTDSPLTELGREQAEALAER-----------------LAGE  43

Query  355  PPRPGDSTPPNPSYIPRDRPRNFCVWSSMMRRSVQTVEGFNED-EYDVKQMKMLDELYAG  413
            P                       ++SS ++R+ QT E   E     V+    L E+  G
Sbjct  44   PFD--------------------AIYSSPLKRARQTAEIIAEALGLPVEIDPRLREIDFG  83

Query  414  EMEGMTYSEIREKYPEEYAIRKKNKLFYRYPGPGGEGYLDVINRLRAVI--IEVERMTDH  471
            + EG+T+ EI E+YPEEY     +     Y  PGGE   DV  R+RA +  +        
Sbjct  84   DWEGLTFEEIAERYPEEYDAWLAD--PADYRPPGGESLADVRARVRAALEELAARHPGKT  141

Query  472  VLIVTHRSVARVLLAYFRGLKRDEVADLDVPLGMLYMLEPKPYGVDFKAY  521
            VL+V+H  V R LLA+  GL  + +    +    L +LE    G      
Sbjct  142  VLVVSHGGVIRALLAHLLGLPLEALRRFPLDNASLSILEFDGGGWVLVLL  191



Lambda      K        H        a         alpha
   0.316    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0716    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00001278

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzym...  194     2e-60


>CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase.  This enzyme occurs 
as a bifunctional enzyme with fructose-2,6-bisphosphatase. 
The bifunctional enzyme catalyzes both the synthesis and degradation 
of fructose-2,6-bisphosphate, a potent regulator 
of glycolysis. This enzyme contains a P-loop motif.
Length=223

 Score = 194 bits (496),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 109/168 (65%), Gaps = 5/168 (3%)

Query  128  DQSASFFDPQNERAVKLREQVALDTLDELLDYILVQGGSVGILDATNSTLERRKLIVDHI  187
              +  FF P N  A+K+REQ AL  L ++L Y+  + G V I DATN+T ERRK I+D  
Sbjct  60   YSNYEFFRPDNPEAMKIREQCALAALKDVLAYLNEESGQVAIFDATNTTRERRKNILDFA  119

Query  188  RQVAGPELGVLFLESSCVDPELLEANMRLKLSG-PDYKGQDPVKSLEDFKKRVALYEKSY  246
             +     L V FLES C DPE++  N++L     PDYKG+ P ++++DF KR+  YEK Y
Sbjct  120  EENG---LKVFFLESICNDPEIIARNIKLVKFSSPDYKGKPPEEAIDDFMKRLECYEKQY  176

Query  247  VPLGEYEEKHGMAYIRMIDVGRKIVSHQTHGFLSSQVVYYLLNFNLSP  294
             PL +  ++  ++YI+MI+VG+ IV +   G+L S++VYYL+N +++P
Sbjct  177  EPLDDEHDED-LSYIKMINVGQSIVVNNVQGYLQSRIVYYLMNIHVTP  223



Lambda      K        H        a         alpha
   0.315    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00001279

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzym...  218     2e-68
CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  123     3e-33


>CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase.  This enzyme occurs 
as a bifunctional enzyme with fructose-2,6-bisphosphatase. 
The bifunctional enzyme catalyzes both the synthesis and degradation 
of fructose-2,6-bisphosphate, a potent regulator 
of glycolysis. This enzyme contains a P-loop motif.
Length=223

 Score = 218 bits (558),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 101/318 (32%), Positives = 142/318 (45%), Gaps = 113/318 (36%)

Query  1    MVGLPARGKSYVTKKLARYLNWLQHDTEIFNVGERRRVAAGKSPSPAKAMGPRDKRASVH  60
            MVGLPARGK+Y++KKL RYLNWL   T++FNVGE RR A                     
Sbjct  18   MVGLPARGKTYISKKLTRYLNWLGVPTKVFNVGEYRRSAVKA------------------  59

Query  61   KDLVDSVRRLSVSVGTMNTQPSQTEISPPESATSPPEINSLPPPVVTAKILVNGQEEDPS  120
                                                                        
Sbjct       ------------------------------------------------------------  

Query  121  MQQEGSTIITSIDAGPDNQQTVTEASPEPMDQSASFFDPQNERAVKLREQVALDTLDELL  180
                                            +  FF P N  A+K+REQ AL  L ++L
Sbjct  60   ------------------------------YSNYEFFRPDNPEAMKIREQCALAALKDVL  89

Query  181  DYILVQGGSVGILDATNSTLERRKLIVDHIRQVAGPELGVLFLESSCVDPELLEANMRLK  240
             Y+  + G V I DATN+T ERRK I+D   +     L V FLES C DPE++  N++L 
Sbjct  90   AYLNEESGQVAIFDATNTTRERRKNILDFAEENG---LKVFFLESICNDPEIIARNIKLV  146

Query  241  LSG-PDYKGQDPVKSLEDFKKRVALYEKSYVPLGEYEEKHGMAYIRMIDVGRKIVSHQTH  299
                PDYKG+ P ++++DF KR+  YEK Y PL +  ++  ++YI+MI+VG+ IV +   
Sbjct  147  KFSSPDYKGKPPEEAIDDFMKRLECYEKQYEPLDDEHDED-LSYIKMINVGQSIVVNNVQ  205

Query  300  GFLSSQVVYYLLNFNLSP  317
            G+L S++VYYL+N +++P
Sbjct  206  GYLQSRIVYYLMNIHVTP  223


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 123 bits (311),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 95/230 (41%), Gaps = 44/230 (19%)

Query  320  IWITRHGESKDNQLGRIGG--DSEISENGRRYAKALTRFIDYQRHQWEQLQQQKNMLRHF  377
            +++ RHGE++ N  GR  G  DS ++E GR  A+AL                    L   
Sbjct  1    LYLVRHGETEWNLEGRFQGRTDSPLTELGREQAEALAER-----------------LAGE  43

Query  378  PPRPGDSTPPNPSYIPRDRPRNFCVWSSMMRRSVQTVEGFNED-EYDVKQMKMLDELYAG  436
            P                       ++SS ++R+ QT E   E     V+    L E+  G
Sbjct  44   PFD--------------------AIYSSPLKRARQTAEIIAEALGLPVEIDPRLREIDFG  83

Query  437  EMEGMTYSEIREKYPEEYAIRKKNKLFYRYPGPGGEGYLDVINRLRAVI--IEVERMTDH  494
            + EG+T+ EI E+YPEEY     +     Y  PGGE   DV  R+RA +  +        
Sbjct  84   DWEGLTFEEIAERYPEEYDAWLAD--PADYRPPGGESLADVRARVRAALEELAARHPGKT  141

Query  495  VLIVTHRSVARVLLAYFRGLKRDEVADLDVPLGMLYMLEPKPYGVDFKAY  544
            VL+V+H  V R LLA+  GL  + +    +    L +LE    G      
Sbjct  142  VLVVSHGGVIRALLAHLLGLPLEALRRFPLDNASLSILEFDGGGWVLVLL  191



Lambda      K        H        a         alpha
   0.317    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 709853300


Query= TCONS_00001280

Length=685
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzym...  196     4e-59
CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  124     3e-33


>CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase.  This enzyme occurs 
as a bifunctional enzyme with fructose-2,6-bisphosphatase. 
The bifunctional enzyme catalyzes both the synthesis and degradation 
of fructose-2,6-bisphosphate, a potent regulator 
of glycolysis. This enzyme contains a P-loop motif.
Length=223

 Score = 196 bits (501),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 109/168 (65%), Gaps = 5/168 (3%)

Query  269  DQSASFFDPQNERAVKLREQVALDTLDELLDYILVQGGSVGILDATNSTLERRKLIVDHI  328
              +  FF P N  A+K+REQ AL  L ++L Y+  + G V I DATN+T ERRK I+D  
Sbjct  60   YSNYEFFRPDNPEAMKIREQCALAALKDVLAYLNEESGQVAIFDATNTTRERRKNILDFA  119

Query  329  RQVAGPELGVLFLESSCVDPELLEANMRLKLSG-PDYKGQDPVKSLEDFKKRVALYEKSY  387
             +     L V FLES C DPE++  N++L     PDYKG+ P ++++DF KR+  YEK Y
Sbjct  120  EENG---LKVFFLESICNDPEIIARNIKLVKFSSPDYKGKPPEEAIDDFMKRLECYEKQY  176

Query  388  VPLGEYEEKHGMAYIRMIDVGRKIVSHQTHGFLSSQVVYYLLNFNLSP  435
             PL +  ++  ++YI+MI+VG+ IV +   G+L S++VYYL+N +++P
Sbjct  177  EPLDDEHDED-LSYIKMINVGQSIVVNNVQGYLQSRIVYYLMNIHVTP  223


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 124 bits (314),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 95/230 (41%), Gaps = 44/230 (19%)

Query  438  IWITRHGESKDNQLGRIGG--DSEISENGRRYAKALTRFIDYQRHQWEQLQQQKNMLRHF  495
            +++ RHGE++ N  GR  G  DS ++E GR  A+AL                    L   
Sbjct  1    LYLVRHGETEWNLEGRFQGRTDSPLTELGREQAEALAER-----------------LAGE  43

Query  496  PPRPGDSTPPNPSYIPRDRPRNFCVWSSMMRRSVQTVEGFNED-EYDVKQMKMLDELYAG  554
            P                       ++SS ++R+ QT E   E     V+    L E+  G
Sbjct  44   PFD--------------------AIYSSPLKRARQTAEIIAEALGLPVEIDPRLREIDFG  83

Query  555  EMEGMTYSEIREKYPEEYAIRKKNKLFYRYPGPGGEGYLDVINRLRAVI--IEVERMTDH  612
            + EG+T+ EI E+YPEEY     +     Y  PGGE   DV  R+RA +  +        
Sbjct  84   DWEGLTFEEIAERYPEEYDAWLAD--PADYRPPGGESLADVRARVRAALEELAARHPGKT  141

Query  613  VLIVTHRSVARVLLAYFRGLKRDEVADLDVPLGMLYMLEPKPYGVDFKAY  662
            VL+V+H  V R LLA+  GL  + +    +    L +LE    G      
Sbjct  142  VLVVSHGGVIRALLAHLLGLPLEALRRFPLDNASLSILEFDGGGWVLVLL  191



Lambda      K        H        a         alpha
   0.315    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 873075680


Query= TCONS_00001281

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzym...  194     2e-59
CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  123     3e-33


>CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase.  This enzyme occurs 
as a bifunctional enzyme with fructose-2,6-bisphosphatase. 
The bifunctional enzyme catalyzes both the synthesis and degradation 
of fructose-2,6-bisphosphate, a potent regulator 
of glycolysis. This enzyme contains a P-loop motif.
Length=223

 Score = 194 bits (496),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 109/168 (65%), Gaps = 5/168 (3%)

Query  128  DQSASFFDPQNERAVKLREQVALDTLDELLDYILVQGGSVGILDATNSTLERRKLIVDHI  187
              +  FF P N  A+K+REQ AL  L ++L Y+  + G V I DATN+T ERRK I+D  
Sbjct  60   YSNYEFFRPDNPEAMKIREQCALAALKDVLAYLNEESGQVAIFDATNTTRERRKNILDFA  119

Query  188  RQVAGPELGVLFLESSCVDPELLEANMRLKLSG-PDYKGQDPVKSLEDFKKRVALYEKSY  246
             +     L V FLES C DPE++  N++L     PDYKG+ P ++++DF KR+  YEK Y
Sbjct  120  EENG---LKVFFLESICNDPEIIARNIKLVKFSSPDYKGKPPEEAIDDFMKRLECYEKQY  176

Query  247  VPLGEYEEKHGMAYIRMIDVGRKIVSHQTHGFLSSQVVYYLLNFNLSP  294
             PL +  ++  ++YI+MI+VG+ IV +   G+L S++VYYL+N +++P
Sbjct  177  EPLDDEHDED-LSYIKMINVGQSIVVNNVQGYLQSRIVYYLMNIHVTP  223


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 123 bits (311),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 95/230 (41%), Gaps = 44/230 (19%)

Query  297  IWITRHGESKDNQLGRIGG--DSEISENGRRYAKALTRFIDYQRHQWEQLQQQKNMLRHF  354
            +++ RHGE++ N  GR  G  DS ++E GR  A+AL                    L   
Sbjct  1    LYLVRHGETEWNLEGRFQGRTDSPLTELGREQAEALAER-----------------LAGE  43

Query  355  PPRPGDSTPPNPSYIPRDRPRNFCVWSSMMRRSVQTVEGFNED-EYDVKQMKMLDELYAG  413
            P                       ++SS ++R+ QT E   E     V+    L E+  G
Sbjct  44   PFD--------------------AIYSSPLKRARQTAEIIAEALGLPVEIDPRLREIDFG  83

Query  414  EMEGMTYSEIREKYPEEYAIRKKNKLFYRYPGPGGEGYLDVINRLRAVI--IEVERMTDH  471
            + EG+T+ EI E+YPEEY     +     Y  PGGE   DV  R+RA +  +        
Sbjct  84   DWEGLTFEEIAERYPEEYDAWLAD--PADYRPPGGESLADVRARVRAALEELAARHPGKT  141

Query  472  VLIVTHRSVARVLLAYFRGLKRDEVADLDVPLGMLYMLEPKPYGVDFKAY  521
            VL+V+H  V R LLA+  GL  + +    +    L +LE    G      
Sbjct  142  VLVVSHGGVIRALLAHLLGLPLEALRRFPLDNASLSILEFDGGGWVLVLL  191



Lambda      K        H        a         alpha
   0.316    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00007073

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzym...  197     5e-60


>CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase.  This enzyme occurs 
as a bifunctional enzyme with fructose-2,6-bisphosphatase. 
The bifunctional enzyme catalyzes both the synthesis and degradation 
of fructose-2,6-bisphosphate, a potent regulator 
of glycolysis. This enzyme contains a P-loop motif.
Length=223

 Score = 197 bits (503),  Expect = 5e-60, Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 109/168 (65%), Gaps = 5/168 (3%)

Query  269  DQSASFFDPQNERAVKLREQVALDTLDELLDYILVQGGSVGILDATNSTLERRKLIVDHI  328
              +  FF P N  A+K+REQ AL  L ++L Y+  + G V I DATN+T ERRK I+D  
Sbjct  60   YSNYEFFRPDNPEAMKIREQCALAALKDVLAYLNEESGQVAIFDATNTTRERRKNILDFA  119

Query  329  RQVAGPELGVLFLESSCVDPELLEANMRLKLSG-PDYKGQDPVKSLEDFKKRVALYEKSY  387
             +     L V FLES C DPE++  N++L     PDYKG+ P ++++DF KR+  YEK Y
Sbjct  120  EENG---LKVFFLESICNDPEIIARNIKLVKFSSPDYKGKPPEEAIDDFMKRLECYEKQY  176

Query  388  VPLGEYEEKHGMAYIRMIDVGRKIVSHQTHGFLSSQVVYYLLNFNLSP  435
             PL +  ++  ++YI+MI+VG+ IV +   G+L S++VYYL+N +++P
Sbjct  177  EPLDDEHDED-LSYIKMINVGQSIVVNNVQGYLQSRIVYYLMNIHVTP  223



Lambda      K        H        a         alpha
   0.313    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 744225144


Query= TCONS_00001282

Length=708
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzym...  233     9e-73
CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  124     4e-33


>CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase.  This enzyme occurs 
as a bifunctional enzyme with fructose-2,6-bisphosphatase. 
The bifunctional enzyme catalyzes both the synthesis and degradation 
of fructose-2,6-bisphosphate, a potent regulator 
of glycolysis. This enzyme contains a P-loop motif.
Length=223

 Score = 233 bits (596),  Expect = 9e-73, Method: Composition-based stats.
 Identities = 107/335 (32%), Positives = 149/335 (44%), Gaps = 113/335 (34%)

Query  125  PDGRIAQRDLGSKLVIVMVGLPARGKSYVTKKLARYLNWLQHDTEIFNVGERRRVAAGKS  184
            P G        SK +IVMVGLPARGK+Y++KKL RYLNWL   T++FNVGE RR A    
Sbjct  1    PRGSTGPNFTNSKTMIVMVGLPARGKTYISKKLTRYLNWLGVPTKVFNVGEYRRSAVKA-  59

Query  185  PSPAKAMGPRDKRASVHKDLVDSVRRLSVSVGTMNTQPSQTEISPPESATSPPEINSLPP  244
                                                                        
Sbjct       ------------------------------------------------------------  

Query  245  PVVTAKILVNGQEEDPSMQQEGSTIITSIDAGPDNQQTVTEASPEPMDQSASFFDPQNER  304
                                                             +  FF P N  
Sbjct  60   -----------------------------------------------YSNYEFFRPDNPE  72

Query  305  AVKLREQVALDTLDELLDYILVQGGSVGILDATNSTLERRKLIVDHIRQVAGPELGVLFL  364
            A+K+REQ AL  L ++L Y+  + G V I DATN+T ERRK I+D   +     L V FL
Sbjct  73   AMKIREQCALAALKDVLAYLNEESGQVAIFDATNTTRERRKNILDFAEENG---LKVFFL  129

Query  365  ESSCVDPELLEANMRLKLSG-PDYKGQDPVKSLEDFKKRVALYEKSYVPLGEYEEKHGMA  423
            ES C DPE++  N++L     PDYKG+ P ++++DF KR+  YEK Y PL +  ++  ++
Sbjct  130  ESICNDPEIIARNIKLVKFSSPDYKGKPPEEAIDDFMKRLECYEKQYEPLDDEHDED-LS  188

Query  424  YIRMIDVGRKIVSHQTHGFLSSQVVYYLLNFNLSP  458
            YI+MI+VG+ IV +   G+L S++VYYL+N +++P
Sbjct  189  YIKMINVGQSIVVNNVQGYLQSRIVYYLMNIHVTP  223


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 124 bits (314),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 95/230 (41%), Gaps = 44/230 (19%)

Query  461  IWITRHGESKDNQLGRIGG--DSEISENGRRYAKALTRFIDYQRHQWEQLQQQKNMLRHF  518
            +++ RHGE++ N  GR  G  DS ++E GR  A+AL                    L   
Sbjct  1    LYLVRHGETEWNLEGRFQGRTDSPLTELGREQAEALAER-----------------LAGE  43

Query  519  PPRPGDSTPPNPSYIPRDRPRNFCVWSSMMRRSVQTVEGFNED-EYDVKQMKMLDELYAG  577
            P                       ++SS ++R+ QT E   E     V+    L E+  G
Sbjct  44   PFD--------------------AIYSSPLKRARQTAEIIAEALGLPVEIDPRLREIDFG  83

Query  578  EMEGMTYSEIREKYPEEYAIRKKNKLFYRYPGPGGEGYLDVINRLRAVI--IEVERMTDH  635
            + EG+T+ EI E+YPEEY     +     Y  PGGE   DV  R+RA +  +        
Sbjct  84   DWEGLTFEEIAERYPEEYDAWLAD--PADYRPPGGESLADVRARVRAALEELAARHPGKT  141

Query  636  VLIVTHRSVARVLLAYFRGLKRDEVADLDVPLGMLYMLEPKPYGVDFKAY  685
            VL+V+H  V R LLA+  GL  + +    +    L +LE    G      
Sbjct  142  VLVVSHGGVIRALLAHLLGLPLEALRRFPLDNASLSILEFDGGGWVLVLL  191



Lambda      K        H        a         alpha
   0.315    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906995850


Query= TCONS_00007074

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzym...  90.1    1e-22


>CDD:396253 pfam01591, 6PF2K, 6-phosphofructo-2-kinase.  This enzyme occurs 
as a bifunctional enzyme with fructose-2,6-bisphosphatase. 
The bifunctional enzyme catalyzes both the synthesis and degradation 
of fructose-2,6-bisphosphate, a potent regulator 
of glycolysis. This enzyme contains a P-loop motif.
Length=223

 Score = 90.1 bits (224),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 43/100 (43%), Positives = 55/100 (55%), Gaps = 8/100 (8%)

Query  125  PDGRIAQRDLGSKLVIVMVGLPARGKSYVTKKLARYLNWLQHDTEIFNVGERRRVAAGK-  183
            P G        SK +IVMVGLPARGK+Y++KKL RYLNWL   T++FNVGE RR A    
Sbjct  1    PRGSTGPNFTNSKTMIVMVGLPARGKTYISKKLTRYLNWLGVPTKVFNVGEYRRSAVKAY  60

Query  184  ------SPSPAKAMGPRDKRASVH-KDLVDSVRRLSVSVG  216
                   P   +AM  R++ A    KD++  +   S  V 
Sbjct  61   SNYEFFRPDNPEAMKIREQCALAALKDVLAYLNEESGQVA  100



Lambda      K        H        a         alpha
   0.311    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00001357

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00001358

Length=91
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461307 pfam04433, SWIRM, SWIRM domain. This SWIRM domain is a...  67.6    3e-17


>CDD:461307 pfam04433, SWIRM, SWIRM domain.  This SWIRM domain is a small 
alpha-helical domain of about 85 amino acid residues found 
in chromosomal proteins. It contains a helix-turn helix motif 
and binds to DNA.
Length=78

 Score = 67.6 bits (166),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 29/79 (37%), Gaps = 6/79 (8%)

Query  8   PDRHLLSPAELSLASTLR----LSCATYLCSKRRIFEARVRALRIGKEFRKTDAQQACKI  63
            D   L P E  L          +   YL  +  I           +   KTDA++A K 
Sbjct  1   SDPDKLHPIEKRLLPEFFNGKSKTPEVYLEIRNFILNLWRE--NPKEYLTKTDARRALKG  58

Query  64  DVNKASKLWTAYDRVGWFD  82
           DVN  S++    +R G  +
Sbjct  59  DVNLISRIHEFLERWGLIN  77



Lambda      K        H        a         alpha
   0.324    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00007117

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00001359

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461307 pfam04433, SWIRM, SWIRM domain. This SWIRM domain is a...  71.8    2e-16


>CDD:461307 pfam04433, SWIRM, SWIRM domain.  This SWIRM domain is a small 
alpha-helical domain of about 85 amino acid residues found 
in chromosomal proteins. It contains a helix-turn helix motif 
and binds to DNA.
Length=78

 Score = 71.8 bits (177),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 29/79 (37%), Gaps = 6/79 (8%)

Query  311  PDRHLLSPAELSLASTLR----LSCATYLCSKRRIFEARVRALRIGKEFRKTDAQQACKI  366
             D   L P E  L          +   YL  +  I           +   KTDA++A K 
Sbjct  1    SDPDKLHPIEKRLLPEFFNGKSKTPEVYLEIRNFILNLWRE--NPKEYLTKTDARRALKG  58

Query  367  DVNKASKLWTAYDRVGWFD  385
            DVN  S++    +R G  +
Sbjct  59   DVNLISRIHEFLERWGLIN  77



Lambda      K        H        a         alpha
   0.315    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00007118

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461307 pfam04433, SWIRM, SWIRM domain. This SWIRM domain is a...  71.8    2e-16


>CDD:461307 pfam04433, SWIRM, SWIRM domain.  This SWIRM domain is a small 
alpha-helical domain of about 85 amino acid residues found 
in chromosomal proteins. It contains a helix-turn helix motif 
and binds to DNA.
Length=78

 Score = 71.8 bits (177),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 29/79 (37%), Gaps = 6/79 (8%)

Query  311  PDRHLLSPAELSLASTLR----LSCATYLCSKRRIFEARVRALRIGKEFRKTDAQQACKI  366
             D   L P E  L          +   YL  +  I           +   KTDA++A K 
Sbjct  1    SDPDKLHPIEKRLLPEFFNGKSKTPEVYLEIRNFILNLWRE--NPKEYLTKTDARRALKG  58

Query  367  DVNKASKLWTAYDRVGWFD  385
            DVN  S++    +R G  +
Sbjct  59   DVNLISRIHEFLERWGLIN  77



Lambda      K        H        a         alpha
   0.315    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00001360

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461307 pfam04433, SWIRM, SWIRM domain. This SWIRM domain is a...  71.8    1e-16


>CDD:461307 pfam04433, SWIRM, SWIRM domain.  This SWIRM domain is a small 
alpha-helical domain of about 85 amino acid residues found 
in chromosomal proteins. It contains a helix-turn helix motif 
and binds to DNA.
Length=78

 Score = 71.8 bits (177),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 29/79 (37%), Gaps = 6/79 (8%)

Query  253  PDRHLLSPAELSLASTLR----LSCATYLCSKRRIFEARVRALRIGKEFRKTDAQQACKI  308
             D   L P E  L          +   YL  +  I           +   KTDA++A K 
Sbjct  1    SDPDKLHPIEKRLLPEFFNGKSKTPEVYLEIRNFILNLWRE--NPKEYLTKTDARRALKG  58

Query  309  DVNKASKLWTAYDRVGWFD  327
            DVN  S++    +R G  +
Sbjct  59   DVNLISRIHEFLERWGLIN  77



Lambda      K        H        a         alpha
   0.315    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00001361

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461307 pfam04433, SWIRM, SWIRM domain. This SWIRM domain is a...  71.8    2e-16


>CDD:461307 pfam04433, SWIRM, SWIRM domain.  This SWIRM domain is a small 
alpha-helical domain of about 85 amino acid residues found 
in chromosomal proteins. It contains a helix-turn helix motif 
and binds to DNA.
Length=78

 Score = 71.8 bits (177),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 29/79 (37%), Gaps = 6/79 (8%)

Query  311  PDRHLLSPAELSLASTLR----LSCATYLCSKRRIFEARVRALRIGKEFRKTDAQQACKI  366
             D   L P E  L          +   YL  +  I           +   KTDA++A K 
Sbjct  1    SDPDKLHPIEKRLLPEFFNGKSKTPEVYLEIRNFILNLWRE--NPKEYLTKTDARRALKG  58

Query  367  DVNKASKLWTAYDRVGWFD  385
            DVN  S++    +R G  +
Sbjct  59   DVNLISRIHEFLERWGLIN  77



Lambda      K        H        a         alpha
   0.315    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00001283

Length=762
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401343 pfam09359, VTC, VTC domain. This presumed domain is fo...  294     3e-95


>CDD:401343 pfam09359, VTC, VTC domain.  This presumed domain is found in 
the yeast vacuolar transport chaperone proteins VTC2, VTC3 
and VTC4. This domain is also found in a variety of bacterial 
proteins.
Length=235

 Score = 294 bits (754),  Expect = 3e-95, Method: Composition-based stats.
 Identities = 133/277 (48%), Positives = 168/277 (61%), Gaps = 43/277 (16%)

Query  215  YSSYKFWVHEDNILEVKTYILRRLPVLIYNPKSSRDFESLPEDPTITSLYFDNPQFDLYN  274
                K+WVH DN++E+KT ILR LPVL+YN           ED TITSLYFDNP FDLYN
Sbjct  2    RRETKYWVHPDNLMELKTRILRHLPVLVYNKTPG------SEDYTITSLYFDNPDFDLYN  55

Query  275  QKVAKAPEAGSLRLRWTGDLKDTPAIFLEKKIVTSDDYSKEVKVQLKKKHVQEFLEGKYT  334
            QK++       +RLRW G L D   IFLE K   S + S + ++ LK+K+V +FLEG   
Sbjct  56   QKLSGREGREKIRLRWYGKLSD-DDIFLEIKTKWSGEVSSKRRLPLKEKYVLDFLEGII-  113

Query  335  FEKQLHRMEGLNNGESAEAETLKKDVEELQSFIKENNLQPMLRANYTRTAFQIPGDDRIR  394
                  +++          E LK+   E+QSFI E NLQP+LR +Y RTAFQIPGDDR+R
Sbjct  114  -----EKLKEDGK------EKLKRLANEIQSFILEYNLQPVLRTSYRRTAFQIPGDDRVR  162

Query  395  ISLDTNLALIREDALDEERPCRDPTDWHRRDIDDSGMQYPFDGIRTGEVNRFPHALLEIK  454
            I++DTNL  IRE              WHR DID          +R GEV+RFP+A+LEIK
Sbjct  163  ITIDTNLRYIRE--------------WHRLDID--------KFLRKGEVSRFPYAVLEIK  200

Query  455  LRGSAHHIEWVNELMVSHLVKEAPRFSKFVHGVAQLF  491
            L+      EW+ EL+ SHLV+E P+FSK+ HGVA LF
Sbjct  201  LKN--KIPEWIEELLNSHLVEEVPKFSKYCHGVASLF  235



Lambda      K        H        a         alpha
   0.317    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 972041536


Query= TCONS_00007075

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00001284

Length=477


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593543448


Query= TCONS_00001285

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00001286

Length=477


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593543448


Query= TCONS_00001287

Length=477


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593543448


Query= TCONS_00007076

Length=429


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 519925656


Query= TCONS_00001288

Length=456


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00001289

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00007078

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.126    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00001290

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00001291

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00001292

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00001293

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0885    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00001294

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00001295

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00007080

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00001296

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            99.8    1e-23


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 99.8 bits (249),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 95/335 (28%), Positives = 132/335 (39%), Gaps = 29/335 (9%)

Query  80   GALGSLFSLLQAIAAPFIGRLSDRYGRRTALLCSMVGNTLSVALWVAATDFRTFLASRIV  139
            G L +LFSL  A+A P  GRLSDR+GRR  LL  ++   L + L + A+     L  R++
Sbjct  35   GLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL  94

Query  140  GGLSEGNVQ-LAHAIATDISDESKRGSTMALVGACFSIAFTCGPALGAALSNITTVAANP  198
             GL  G +   A A+  D     +RG  + LV A F +    GP LG  L+++    A  
Sbjct  95   QGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRA-A  153

Query  199  FATAAGVSLVLIVTETLYLYRCLPETHPRLTKLSLGPHRAEDTASPTQKNGKQADASNPD  258
            F   A +SL+  V         LP   P   +               +            
Sbjct  154  FLILAILSLLAAV------LLLLPRPPPESKRPKPAEEARLSLIVAWKAL----------  197

Query  259  STMPRKRTNNPALLNLLHFLFLLPFSGLEFSLPFLTATFYAGSTASPSALNGRLLSLMGL  318
                    +    L L   LF   F GL   LP        G +A  + L   L  L+G 
Sbjct  198  ------LRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVL--GLSALLAGLLLGLGGLLGA  249

Query  319  IASLLQGTVVRRLPP---LMTLRAGVVACTISFFLLARVSSLVGLYSAGALLAVTSATVV  375
            I  LL G +  RL     L+     ++   +   LL+   S + L  A  LL      V 
Sbjct  250  IGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVF  309

Query  376  TGLNSLGSLEAREGERGLVLGRLRSWGQVGRAAGP  410
              LN+L S  A + ERG   G   + G +G A GP
Sbjct  310  PALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.324    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00007081

Length=258


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00007082

Length=447


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00001297

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            99.8    1e-23


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 99.8 bits (249),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 95/335 (28%), Positives = 132/335 (39%), Gaps = 29/335 (9%)

Query  80   GALGSLFSLLQAIAAPFIGRLSDRYGRRTALLCSMVGNTLSVALWVAATDFRTFLASRIV  139
            G L +LFSL  A+A P  GRLSDR+GRR  LL  ++   L + L + A+     L  R++
Sbjct  35   GLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL  94

Query  140  GGLSEGNVQ-LAHAIATDISDESKRGSTMALVGACFSIAFTCGPALGAALSNITTVAANP  198
             GL  G +   A A+  D     +RG  + LV A F +    GP LG  L+++    A  
Sbjct  95   QGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRA-A  153

Query  199  FATAAGVSLVLIVTETLYLYRCLPETHPRLTKLSLGPHRAEDTASPTQKNGKQADASNPD  258
            F   A +SL+  V         LP   P   +               +            
Sbjct  154  FLILAILSLLAAV------LLLLPRPPPESKRPKPAEEARLSLIVAWKAL----------  197

Query  259  STMPRKRTNNPALLNLLHFLFLLPFSGLEFSLPFLTATFYAGSTASPSALNGRLLSLMGL  318
                    +    L L   LF   F GL   LP        G +A  + L   L  L+G 
Sbjct  198  ------LRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVL--GLSALLAGLLLGLGGLLGA  249

Query  319  IASLLQGTVVRRLPP---LMTLRAGVVACTISFFLLARVSSLVGLYSAGALLAVTSATVV  375
            I  LL G +  RL     L+     ++   +   LL+   S + L  A  LL      V 
Sbjct  250  IGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVF  309

Query  376  TGLNSLGSLEAREGERGLVLGRLRSWGQVGRAAGP  410
              LN+L S  A + ERG   G   + G +G A GP
Sbjct  310  PALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.324    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00007083

Length=212


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.125    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00007084

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            99.8    1e-23


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 99.8 bits (249),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 95/335 (28%), Positives = 132/335 (39%), Gaps = 29/335 (9%)

Query  80   GALGSLFSLLQAIAAPFIGRLSDRYGRRTALLCSMVGNTLSVALWVAATDFRTFLASRIV  139
            G L +LFSL  A+A P  GRLSDR+GRR  LL  ++   L + L + A+     L  R++
Sbjct  35   GLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL  94

Query  140  GGLSEGNVQ-LAHAIATDISDESKRGSTMALVGACFSIAFTCGPALGAALSNITTVAANP  198
             GL  G +   A A+  D     +RG  + LV A F +    GP LG  L+++    A  
Sbjct  95   QGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRA-A  153

Query  199  FATAAGVSLVLIVTETLYLYRCLPETHPRLTKLSLGPHRAEDTASPTQKNGKQADASNPD  258
            F   A +SL+  V         LP   P   +               +            
Sbjct  154  FLILAILSLLAAV------LLLLPRPPPESKRPKPAEEARLSLIVAWKAL----------  197

Query  259  STMPRKRTNNPALLNLLHFLFLLPFSGLEFSLPFLTATFYAGSTASPSALNGRLLSLMGL  318
                    +    L L   LF   F GL   LP        G +A  + L   L  L+G 
Sbjct  198  ------LRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVL--GLSALLAGLLLGLGGLLGA  249

Query  319  IASLLQGTVVRRLPP---LMTLRAGVVACTISFFLLARVSSLVGLYSAGALLAVTSATVV  375
            I  LL G +  RL     L+     ++   +   LL+   S + L  A  LL      V 
Sbjct  250  IGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVF  309

Query  376  TGLNSLGSLEAREGERGLVLGRLRSWGQVGRAAGP  410
              LN+L S  A + ERG   G   + G +G A GP
Sbjct  310  PALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.324    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00001298

Length=442


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 539863808


Query= TCONS_00001299

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00007085

Length=307


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00001300

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463539 pfam12341, Mcl1_mid, Minichromosome loss protein, Mcl1...  97.6    9e-25


>CDD:463539 pfam12341, Mcl1_mid, Minichromosome loss protein, Mcl1, middle 
region.  Mcl1_mid, or the middle domain of minichromosome 
loss protein 1, is the domain that lies between a 7-bladed beta-propeller 
at the N-terminus, family WD40 pfam00400 etc, 
and a Homeobox (HMG) domain, pfam00505, at the C-terminus. The 
full length proteins with all three domains are referred 
to as DNA polymerase alpha accessory factor Mcl1, but the exact 
function of this domain is not known.
Length=288

 Score = 97.6 bits (244),  Expect = 9e-25, Method: Composition-based stats.
 Identities = 43/135 (32%), Positives = 60/135 (44%), Gaps = 22/135 (16%)

Query  1    MTIGNGPLGSDGLTATLTYSIENVKRDEVCQNEDVVALPEGSELRSVFF----FLIFPGS  56
              + +     DG    L+YS+ +V RDE  Q E  + L  GS L+ + F          S
Sbjct  156  FVVYHNGGPLDG-DQNLSYSLLDVSRDE-LQREGPLPLSPGSTLKWLGFSEEGDPCIYDS  213

Query  57   ---LHLRFRRCPPH-------LAALAYSWPGS-----WPVAVAQEKFHCIILKGGDRYPY  101
               L +  +   P        L        G      WPV V+++K  CII KGG++YP 
Sbjct  214  DGVLRVLSKWRSPGQARWVPVLDTKLLLRKGGKSDTYWPVGVSEDKLRCIICKGGEKYPG  273

Query  102  F-PRPLLSEFDFRIP  115
            F PRPLLSE   ++P
Sbjct  274  FLPRPLLSELPLKLP  288



Lambda      K        H        a         alpha
   0.319    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00001301

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    445     4e-155


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 445 bits (1147),  Expect = 4e-155, Method: Composition-based stats.
 Identities = 161/377 (43%), Positives = 220/377 (58%), Gaps = 24/377 (6%)

Query  1    MGTASTMACVTAALGLMPLRGASAPAVSSARVRIAEETGANAVAAAIAKRRPQDILSKES  60
            MGTA+TMAC+  ALGL     A+ PAVS+ R+R+A E G   V       +P+DIL++++
Sbjct  158  MGTANTMACLAEALGLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIKPRDILTRKA  217

Query  61   FLNAITVLQAIGGSTNAVVHLMAIVNRHPKLQG-AITLDTFAEIGRSTPLLIDLKPSGDN  119
            F NAI V  A+GGSTNAV+HL+AI        G  +TLD F  I R  PLL DLKPSG  
Sbjct  218  FENAIVVDMALGGSTNAVLHLLAIAREA----GVDLTLDDFDRISRKVPLLADLKPSGKY  273

Query  120  YMNDFHNAGGMLALLHTLRP-LLHLSAMTISGQTLGEVLDASPFRTFPLSQQVIRTLSNP  178
             M DFH AGG+ A+L  L   LLH   +T++G+TLGE L  +  R     Q VIR L NP
Sbjct  274  LMEDFHRAGGVPAVLKELLDALLHGDVLTVTGKTLGENLADAEVR----DQDVIRPLDNP  329

Query  179  LYPSSSLVVLKGNIAPDGAIIKASASKDRRLLTHTGPAVVFENPEDLAKRIDDPDLDVTK  238
            + P+  L VLKGN+APDGA++K SA  D  +L   GPA VF++ ED    I D    +  
Sbjct  330  ISPTGGLAVLKGNLAPDGAVVKTSA-VDPEMLVFEGPARVFDSEEDALAAILDG--KIKA  386

Query  239  DSVLVLKGIGPIGNPGMPEAGLIPIPRKLASAGI-KDMLRLSDGRMSGTAGGTIVLHISP  297
              V+V++  GP G PGMPE  ++     L  AG+ KD+  ++DGR SG + G  + H+SP
Sbjct  387  GDVVVIRYEGPKGGPGMPE--MLTPTSALLGAGLGKDVALITDGRFSGASRGPSIGHVSP  444

Query  298  ESALPESPFGVVQTGDMITCNADSGKLNLEISDEELKFRVETRKKEADAATACLHRARSR  357
            E+A+   P  +V+ GD+I  +  +  L+L +SDEEL      R+           + + R
Sbjct  445  EAAV-GGPIALVRDGDIIRIDIPNRTLDLLVSDEEL----AARRAAWKPPEP---KVKGR  496

Query  358  GYRGLYERSVNQAQDGA  374
            GY   Y + V+ A +GA
Sbjct  497  GYLAKYAKLVSSASEGA  513



Lambda      K        H        a         alpha
   0.317    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00001302

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    445     3e-155


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 445 bits (1147),  Expect = 3e-155, Method: Composition-based stats.
 Identities = 161/377 (43%), Positives = 220/377 (58%), Gaps = 24/377 (6%)

Query  1    MGTASTMACVTAALGLMPLRGASAPAVSSARVRIAEETGANAVAAAIAKRRPQDILSKES  60
            MGTA+TMAC+  ALGL     A+ PAVS+ R+R+A E G   V       +P+DIL++++
Sbjct  158  MGTANTMACLAEALGLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIKPRDILTRKA  217

Query  61   FLNAITVLQAIGGSTNAVVHLMAIVNRHPKLQG-AITLDTFAEIGRSTPLLIDLKPSGDN  119
            F NAI V  A+GGSTNAV+HL+AI        G  +TLD F  I R  PLL DLKPSG  
Sbjct  218  FENAIVVDMALGGSTNAVLHLLAIAREA----GVDLTLDDFDRISRKVPLLADLKPSGKY  273

Query  120  YMNDFHNAGGMLALLHTLRP-LLHLSAMTISGQTLGEVLDASPFRTFPLSQQVIRTLSNP  178
             M DFH AGG+ A+L  L   LLH   +T++G+TLGE L  +  R     Q VIR L NP
Sbjct  274  LMEDFHRAGGVPAVLKELLDALLHGDVLTVTGKTLGENLADAEVR----DQDVIRPLDNP  329

Query  179  LYPSSSLVVLKGNIAPDGAIIKASASKDRRLLTHTGPAVVFENPEDLAKRIDDPDLDVTK  238
            + P+  L VLKGN+APDGA++K SA  D  +L   GPA VF++ ED    I D    +  
Sbjct  330  ISPTGGLAVLKGNLAPDGAVVKTSA-VDPEMLVFEGPARVFDSEEDALAAILDG--KIKA  386

Query  239  DSVLVLKGIGPIGNPGMPEAGLIPIPRKLASAGI-KDMLRLSDGRMSGTAGGTIVLHISP  297
              V+V++  GP G PGMPE  ++     L  AG+ KD+  ++DGR SG + G  + H+SP
Sbjct  387  GDVVVIRYEGPKGGPGMPE--MLTPTSALLGAGLGKDVALITDGRFSGASRGPSIGHVSP  444

Query  298  ESALPESPFGVVQTGDMITCNADSGKLNLEISDEELKFRVETRKKEADAATACLHRARSR  357
            E+A+   P  +V+ GD+I  +  +  L+L +SDEEL      R+           + + R
Sbjct  445  EAAV-GGPIALVRDGDIIRIDIPNRTLDLLVSDEEL----AARRAAWKPPEP---KVKGR  496

Query  358  GYRGLYERSVNQAQDGA  374
            GY   Y + V+ A +GA
Sbjct  497  GYLAKYAKLVSSASEGA  513



Lambda      K        H        a         alpha
   0.317    0.134    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00001303

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  92.7    9e-21


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 92.7 bits (231),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 90/471 (19%), Positives = 152/471 (32%), Gaps = 87/471 (18%)

Query  5    VFGIILGGLKHDVVVSPSLTKAILASRGTSSNALINYALEK--VGGDQGAIRSLSATDHH  62
            +F + LG     V+  P   K +L  +G   +   +        G   G     +     
Sbjct  36   IFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGIVFANGPRW  95

Query  63   IIHHNIPNLLMREPFLTEASKVAKDITEREAPNLVTFCRSMVDQAPWERRSEAEVTDGQE  122
                     L    F +      +   E EA +LV   R    +                
Sbjct  96   RQLRR---FLTPT-FTSFGKLSFEPRVEEEARDLVEKLRKTAGEP---------------  136

Query  123  KLMAEVNLFALVRNFVGHISTSVLMGQAFL----EAFPDLLDDMW----TFDNRFPVMAL  174
                 +++  L+     ++  S+L G+ F       F +L+  +        +  P +  
Sbjct  137  ---GVIDITDLLFRAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLD  193

Query  175  GAPRWLPLPGLSAAYAARDRILDALAAYHQAFV-----SWDEGNDPGVKFRDLDDVSESM  229
              P     PG         R    +       +     + D        F  LD +  + 
Sbjct  194  LFPILKYFPG--PHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDF--LDALLLAK  249

Query  230  KQRIRKFKELGLSPRSSAPGHLSLFWALNANSPNVVFWNILRIYSDPALLEEVRKEIAPF  289
                 +     L+        L LF+A    + + + W +  +   P + E++R+EI   
Sbjct  250  ----EEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEI---  302

Query  290  VKVYRPSREETGLPFQEPVKVSLDPDELFRSCPLLKASFYETMRL-DSAGLS-FREVTSD  347
                     +  +  +       D   +    P L A   ET+RL     L   REVT D
Sbjct  303  ---------DEVIGDKRSPTYD-DLQNM----PYLDAVIKETLRLHPVVPLLLPREVTKD  348

Query  348  LTVTESPEDAAAASLAEPRTYRIKKGGNIVMAHGMVQRDPRLFSNPEQFDPLRFVVTDPD  407
              +                 Y I KG  +++    + RDP +F NPE+FDP RF     +
Sbjct  349  TVI---------------PGYLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERF---LDE  390

Query  408  TGARKADMHTIY--PFGAGVSGCKGRALAERMNLLFTAAIISTWDIEPASG  456
             G  +    +    PFGAG   C G  LA     LF A ++  +++E   G
Sbjct  391  NGKFR---KSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPG  438



Lambda      K        H        a         alpha
   0.320    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00007086

Length=108
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  60.0    2e-12


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 60.0 bits (146),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 27/76 (36%), Positives = 38/76 (50%), Gaps = 8/76 (11%)

Query  6    VQRDPRLFSNPEQFDPLRFVVTDPDTGARKADMHTIY--PFGAGVSGCKGRALAERMNLL  63
            + RDP +F NPE+FDP RF     + G  +    +    PFGAG   C G  LA     L
Sbjct  369  LHRDPEVFPNPEEFDPERF---LDENGKFR---KSFAFLPFGAGPRNCLGERLARMEMKL  422

Query  64   FTAAIISTWDIEPASG  79
            F A ++  +++E   G
Sbjct  423  FLATLLQNFEVELPPG  438



Lambda      K        H        a         alpha
   0.323    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00007087

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  89.6    6e-20


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 89.6 bits (223),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 72/348 (21%), Positives = 122/348 (35%), Gaps = 63/348 (18%)

Query  54   AEVNLFALVRNFVGHISTSVLMGQAFL----EAFPDLLDDMW----TFDNRFPVMALGAP  105
              +++  L+     ++  S+L G+ F       F +L+  +        +  P +    P
Sbjct  137  GVIDITDLLFRAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFP  196

Query  106  RWLPLPGLSAAYAARDRILDALAAYHQAFV-----SWDEGNDPGVKFRDLDDVSESMKQR  160
                 PG         R    +       +     + D        F  LD +  +    
Sbjct  197  ILKYFPG--PHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDF--LDALLLAK---  249

Query  161  IRKFKELGLSPRSSAPGHLSLFWALNANSPNVVFWNILRIYSDPALLEEVRKEIAPFVKV  220
              +     L+        L LF+A    + + + W +  +   P + E++R+EI      
Sbjct  250  -EEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEI------  302

Query  221  YRPSREETGLPFQEPVKVSLDPDELFRSCPLLKASFYETMRL-DSAGLS-FREVTSDLTV  278
                  +  +  +       D   +    P L A   ET+RL     L   REVT D  +
Sbjct  303  ------DEVIGDKRSPTYD-DLQNM----PYLDAVIKETLRLHPVVPLLLPREVTKDTVI  351

Query  279  TESPEDAAAASLAEPRTYRIKKGGNIVMAHGMVQRDPRLFSNPEQFDPLRFVVTDPDTGA  338
                             Y I KG  +++    + RDP +F NPE+FDP RF     + G 
Sbjct  352  ---------------PGYLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERF---LDENGK  393

Query  339  RKADMHTIY--PFGAGVSGCKGRALAERMNLLFTAAIISTWDIEPASG  384
             +    +    PFGAG   C G  LA     LF A ++  +++E   G
Sbjct  394  FR---KSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPG  438



Lambda      K        H        a         alpha
   0.320    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00001304

Length=1998
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395245 pfam00310, GATase_2, Glutamine amidotransferases class-II  693     0.0   
CDD:396287 pfam01645, Glu_synthase, Conserved region in glutamate...  587     0.0   
CDD:461469 pfam04898, Glu_syn_central, Glutamate synthase central...  480     2e-156
CDD:460231 pfam01493, GXGXG, GXGXG motif. This domain is found in...  384     2e-123
CDD:434132 pfam14691, Fer4_20, Dihydroprymidine dehydrogenase dom...  108     5e-28 
CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  107     1e-25 


>CDD:395245 pfam00310, GATase_2, Glutamine amidotransferases class-II.  
Length=420

 Score = 693 bits (1792),  Expect = 0.0, Method: Composition-based stats.
 Identities = 243/409 (59%), Positives = 290/409 (71%), Gaps = 19/409 (5%)

Query  1    MTHRGAVGSDARDGDGAGVMTSIPHKFFIKNFAREVGVELPPLGQYAVGNLFFKPDQESL  60
            M HRGA G+D   GDGAG++T IP +FF K    E+G+ELP  GQYAVG +F   D+   
Sbjct  28   MEHRGACGADPDTGDGAGILTQIPDEFFRKEAK-ELGIELPEAGQYAVGMVFLPQDEAKR  86

Query  61   KESTAKLEEIAESLGLRVLGWREVPRDSTILGPAALSREPIIMQPFVVLKSAYGEGNKPE  120
             E+    EEIAE  GL VLGWREVP ++++LG AAL  EP I Q FV             
Sbjct  87   AEAKKIFEEIAEEEGLEVLGWREVPTNNSVLGEAALESEPQIEQVFV-------------  133

Query  121  NTDPESFDERTFERQLYVLRKRATHVIGLANW---FYLCSLSNRNIVYKGQLAPVQVYQY  177
               P    E  FER+LYV RKR    IG+      FY+CSLS+R IVYKG L P Q+ Q+
Sbjct  134  -GSPAGKSEDDFERKLYVARKRIEKEIGVEGGDKDFYICSLSSRTIVYKGMLTPEQLGQF  192

Query  178  YHDLVNVDYEAHFALVHSRFSTNTFPSWDRAQPLRWAAHNGEINTLRGNKNWMRAREGLL  237
            Y DL +  +E+ FALVHSRFSTNTFPSW  AQP+R+ AHNGEINTLRGN+NWMRARE LL
Sbjct  193  YLDLQDPRFESAFALVHSRFSTNTFPSWPLAQPMRFLAHNGEINTLRGNRNWMRAREALL  252

Query  238  KSDIFGDELDSLYPIVEDGGSDSAAFDNVLELLMINGVLSLPEAVMIMIPEAWQDNPAMD  297
            KS++FGD+LD L PIV  GGSDSA+ DNVLELL++ G  SLPEA+M++IPEAWQ+NP+MD
Sbjct  253  KSELFGDDLDKLLPIVNPGGSDSASLDNVLELLVLGGR-SLPEALMMLIPEAWQNNPSMD  311

Query  298  PAKAAFYEWAACQMEPWDGPALFTFSDGRYCGANLDRNGLRPCRFYVTDDDRIICASEVG  357
            P K AFYE+ +  MEPWDGPAL  F+DGRY GA LDRNGLRP R+Y+T D  II ASEVG
Sbjct  312  PEKRAFYEYHSGLMEPWDGPALIVFTDGRYVGATLDRNGLRPARYYITKDGLIILASEVG  371

Query  358  AVDIDPERVVQKGRLQPGKMLLVDTVAGRIIDDAELKHTVAHRQDFAAW  406
             +DI PERVV+KGRL PG+MLLVD   GRIIDD E+K  +A R  +  W
Sbjct  372  VLDIPPERVVEKGRLGPGRMLLVDLEEGRIIDDEEIKQQIASRHPYGEW  420


>CDD:396287 pfam01645, Glu_synthase, Conserved region in glutamate synthase. 
 This family represents a region of the glutamate synthase 
protein. This region is expressed as a separate subunit in 
the glutamate synthase alpha subunit from archaebacteria, 
or part of a large multidomain enzyme in other organisms. The 
aligned region of these proteins contains a putative FMN binding 
site and Fe-S cluster.
Length=367

 Score = 587 bits (1516),  Expect = 0.0, Method: Composition-based stats.
 Identities = 230/373 (62%), Positives = 272/373 (73%), Gaps = 8/373 (2%)

Query  789   HINDPVSIANVQDAVRTKNDKSYEAYAKAAHEQIKNCTLRGMLEFDFEQRSPIPIDQVEP  848
             H N+P  I  +Q AV+ ++  SY+ Y +  +E++    LR +LEFDF +  PIP+++VEP
Sbjct  1     HRNEPEFIKTLQIAVQVESYPSYDKYREPLNERVPIGALRDLLEFDFAE-DPIPLEEVEP  59

Query  849   WTEIVRRFVTGAMSYGSISMESHSTLAIAMNRLGGKSNTGEGGEDPERSKRLENGDTMRS  908
               EI  RF TGAMSYG++S E+H  LA AMNRLG KSNTGEGGEDPER K  +N      
Sbjct  60    ALEIKTRFCTGAMSYGALSEEAHEALAKAMNRLGTKSNTGEGGEDPERLKYADNI-----  114

Query  909   AIKQIASGRFGVTSHYLADADELQIKMAQGAKPGEGGELPGHKVVGPIAHTRYSTPGVGL  968
             AIKQ+ASGRFGVT  YL +AD ++IK+AQGAKPGEGG LPG KV   IA  R S PGVGL
Sbjct  115   AIKQVASGRFGVTPEYLNNADAIEIKIAQGAKPGEGGHLPGEKVSPEIARIRGSPPGVGL  174

Query  969   ISPPPHHDIYSIEDLKQLIYDLKCSNPRSRVSVKLVSEVGVGIVASGVAKAKADHILISG  1028
             ISPPPHHDIYSIEDL QLIYDLK  NP++ +SVKLVS  GVG +A+GVAKA AD ILI G
Sbjct  175   ISPPPHHDIYSIEDLAQLIYDLKEINPKAPISVKLVSGHGVGTIAAGVAKAGADIILIDG  234

Query  1029  HDGGTGASRWTGIKYAGLPWELGLAETHQTLVLNDLRGRVVVQTDGQLRTGRDVAIACLL  1088
             +DGGTGAS  T IK+AGLPWEL LAE HQTL  N LR RV +  DG LRTG DVA A  L
Sbjct  235   YDGGTGASPKTSIKHAGLPWELALAEAHQTLKENGLRDRVSLIADGGLRTGADVAKAAAL  294

Query  1089  GAEEFGFATTPLIALGCIMMRKCHLNTCPVGIATQDPELR--QKFKGTPEHVINFFYYVA  1146
             GA+     T  LIALGCIM R CH NTCPVG+ATQDPELR    F+G PE V+N+F ++A
Sbjct  295   GADAVYIGTAALIALGCIMCRVCHTNTCPVGVATQDPELRKRLDFEGAPERVVNYFRFLA  354

Query  1147  NEMRAIMAKLGIR  1159
              E+R ++A LGI 
Sbjct  355   EEVRELLAALGIN  367


>CDD:461469 pfam04898, Glu_syn_central, Glutamate synthase central domain. 
 The central domain of glutamate synthase connects the amino 
terminal amidotransferase domain with the FMN-binding domain 
and has an alpha / beta overall topology. This domain appears 
to be a rudimentary form of the FMN-binding TIM barrel 
according to SCOP.
Length=281

 Score = 480 bits (1238),  Expect = 2e-156, Method: Composition-based stats.
 Identities = 153/288 (53%), Positives = 201/288 (70%), Gaps = 9/288 (3%)

Query  442  RLKAFGYSFEQVSLLLGPMAADSKEALGSMGNDAPLACMAQQPRLLYEYFRQLFAQVTNP  501
            R KAFGY+ E + +LL PMA   KE +GSMG+D PLA ++ +PRLLY+YF+QLFAQVTNP
Sbjct  2    RQKAFGYTQEDLEMLLKPMAETGKEPIGSMGDDTPLAVLSDKPRLLYDYFKQLFAQVTNP  61

Query  502  PIDPIREAVVMSLECYVGPQGNLLEMDASQCNRLRLPSPILSIPEFNAIKNISQVYNDWT  561
            PIDPIRE +VMSL  Y+GP+GNLLE     C RL LPSPIL+  E   ++++      + 
Sbjct  62   PIDPIREEIVMSLRTYLGPEGNLLEETPEHCRRLELPSPILTNEELEKLRSLKG--PGFK  119

Query  562  VKIIDITFEKKKGVPGYLQALDDICDATTEAIQNGDKIIVLSDRATSADRVPVSALLATG  621
            V  +DITF       G   AL+ +C+   EA+++G  I++LSDR   ADR P+ +LLA  
Sbjct  120  VATLDITF------DGLEAALERLCEEAEEAVRDGANILILSDRGVDADRAPIPSLLAVS  173

Query  622  LVHHHMVRNKWRSLAALVVETAEAREVHHMCVLVGYGADAVNPYLAMECILKMNREKLIR  681
             VHHH+VR   R+  +LVVE+ EAREVHH  VL+GYGADAVNPYLA E I  + RE   +
Sbjct  174  AVHHHLVREGLRTKVSLVVESGEAREVHHFAVLLGYGADAVNPYLAFETIRDLIREGKGK  233

Query  682  KP-LSDEKVIENYKASCDGGILKVMSKMGISTLQSYKGAQIFEALGID  728
                  E+ ++NY+ + + G+LK+MSKMGISTLQSY+GAQIFEA+G+ 
Sbjct  234  LTDEDLEEAVKNYRKAIEKGLLKIMSKMGISTLQSYRGAQIFEAIGLS  281


>CDD:460231 pfam01493, GXGXG, GXGXG motif.  This domain is found in glutamate 
synthase, tungsten formylmethanofuran dehydrogenase subunit 
c (FwdC) and molybdenum formylmethanofuran dehydrogenase 
subunit c (FmdC). A repeated G-XX-G-XXX-G motif is seen in 
the alignment.
Length=190

 Score = 384 bits (988),  Expect = 2e-123, Method: Composition-based stats.
 Identities = 132/190 (69%), Positives = 152/190 (80%), Gaps = 0/190 (0%)

Query  1239  CDIVNTDRALGATLSYQVSRRYGGAGLPQDTIHANIKGSAGQSFGAFLAPGITLELEGDA  1298
              +I NTDR++G  LS ++++RYG  GLP DTI     GSAGQSFGAFL  G+TLELEGDA
Sbjct  1     YEIRNTDRSVGTILSGEIAKRYGEDGLPDDTITIKFNGSAGQSFGAFLPKGLTLELEGDA  60

Query  1299  NDYVGKGLSGGRLIVYPPRGAAYKAEENIIIGNTCLYGATRGTCYFRGVAAERFAVRNSG  1358
             NDYVGKGLSGG++I+YPP  + +KAEENIIIGNTCLYGAT G  +  G A ERFAVRNSG
Sbjct  61    NDYVGKGLSGGKIIIYPPAESTFKAEENIIIGNTCLYGATGGELFINGRAGERFAVRNSG  120

Query  1359  ATAVVEGVGDHGCEYMTGGRVLILGSTGRNFAAGMSGGIAYVLDMNQDFLSKVNMEMVEV  1418
             ATAVVEGVGDHGCEYMTGGRV++LG TGRNF AGMSGGIAYVLD + DF  K+N EMVE+
Sbjct  121   ATAVVEGVGDHGCEYMTGGRVVVLGKTGRNFGAGMSGGIAYVLDEDGDFPEKLNKEMVEL  180

Query  1419  SGLEDPAEIA  1428
               + D  E A
Sbjct  181   ERVTDEDEEA  190


>CDD:434132 pfam14691, Fer4_20, Dihydroprymidine dehydrogenase domain II, 
4Fe-4S cluster.  Domain II of the enzyme dihydroprymidine dehydrogenase 
binds FAD. Dihydroprymidine dehydrogenase catalyzes 
the first and rate-limiting step of pyrimidine degradation 
by converting pyrimidines to the corresponding 5,6- dihydro 
compounds. This domain carries two Fe4-S4 clusters.
Length=113

 Score = 108 bits (272),  Expect = 5e-28, Method: Composition-based stats.
 Identities = 40/115 (35%), Positives = 61/115 (53%), Gaps = 5/115 (4%)

Query  1556  RTRDWAELSSRLSEDELKYQSARCMDCGVPFCQSDTGCPISNIIPKWNELVFANQWQDAL  1615
             R +++ E++   +E+E   +++RC+ C  P C    GCP+   IP++ +L+    ++ A 
Sbjct  1     RIKNFEEVALGYTEEEAIAEASRCLQCKDPPCV--KGCPVHIDIPEFIKLIAEGNFEGAA  58

Query  1616  NRLLMTNNFPEFTGRVCPA--PCEGACVLGI-NEDPVGIKSIECAIIDRGFEMGW  1667
               +L TN  P   GRVCP    CEGACVLG    +PV I  +E    D   E G 
Sbjct  59    RIILETNPLPAICGRVCPQERQCEGACVLGKKGFEPVAIGRLERFAADWARENGI  113


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 107 bits (270),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 84/340 (25%), Positives = 121/340 (36%), Gaps = 81/340 (24%)

Query  1681  VAIIGSGPAGLAAADQLNRAGHSVTVYERADRI---GGLLMYGIPNMKLDKKIVQRRVDL  1737
             V +IG GPAGLAAA  L + G  VT+ E        G +L   +       +I     DL
Sbjct  3     VVVIGGGPAGLAAALTLAQLGGKVTLIEDEGTCPYGGCVLSKALLGAAEAPEIASLWADL  62

Query  1738  MA---------AEGIKFVTN---TAVGPDN-EVSLNSLRQSN------DAVIIATGATVA  1778
                          GI+ +      ++ P   +V L  L   +      D ++IATGA   
Sbjct  63    YKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEELVDGDGETITYDRLVIATGAR-P  121

Query  1779  RDLKVPGRELDGVHFAMQFLHRNTKSLLDSGLSDGEYISAK--DKHVVVIGGGDTGNDCI  1836
             R   +PG EL+                L   L   E +  K   K VVV+GGG  G +  
Sbjct  122   RLPPIPGVELNVGF-------------LVRTLDSAEALRLKLLPKRVVVVGGGYIGVELA  168

Query  1837  GTSVRHGAKSVVNFELLPQPPP---ERARDNPWPQWPRIYRVDYGHSEVKTHMGKDPREY  1893
                 + G + V   E L +      E                    + V+  +G      
Sbjct  169   AALAKLGKE-VTLIEALDRLLRAFDEEISA--------ALEKALEKNGVEVRLG------  213

Query  1894  CVMSTEFVDDGNGHVKGINTVRVEWTKSASGGWDMKTIEGSEQFFPADLVLLSMGFLGPE  1953
                  E + DG+G                      + I        ADLV++++G   P 
Sbjct  214   -TSVKEIIGDGDGV---------------------EVILKDGTEIDADLVVVAIGR-RPN  250

Query  1954  DRLLGNE-IERDARKNVKTPPGHYSTSVSGVFAAGDCRRG  1992
               LL    +E D R  +     +  TSV G++AAGDCR G
Sbjct  251   TELLEAAGLELDERGGIVVDE-YLRTSVPGIYAAGDCRVG  289



Lambda      K        H        a         alpha
   0.319    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2499650342


Query= TCONS_00007088

Length=755
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371055 pfam10443, RNA12, RNA12 protein. This family includes ...  710     0.0  


>CDD:371055 pfam10443, RNA12, RNA12 protein.  This family includes RNA12 
from S. cerevisiae. That protein contains an RRM domain. This 
region is C-terminal to that and includes a P-loop motif suggesting 
this region binds to NTP. The RNA12 proteins is involved 
in pre-rRNA maturation.
Length=429

 Score = 710 bits (1836),  Expect = 0.0, Method: Composition-based stats.
 Identities = 267/451 (59%), Positives = 321/451 (71%), Gaps = 34/451 (8%)

Query  288  RQEDITRLQSWLMENVETFIIIHGPRGSGKRELVLDRALVDYKYKIVIDCKQIQDARGDS  347
            R+E I +LQ WL+ENV TFI++ GPRGSGKRELV+DR L D K  +VIDC Q+Q ARGD+
Sbjct  1    RKEKIEQLQEWLLENVNTFIVVQGPRGSGKRELVMDRVLKDRKNVLVIDCDQLQKARGDA  60

Query  348  AKIARAASQVGYRPVFSWMNSISSFIDLAAQGMIGTKAGFSETLDAQLSNIWQNTATALK  407
              I+ AASQVGY PVFSWMNSISS IDLAAQG+ G KAGFSET +AQL NI Q TATALK
Sbjct  61   GFISTAASQVGYFPVFSWMNSISSLIDLAAQGLTGQKAGFSETKEAQLRNILQTTATALK  120

Query  408  KVTLEHRKKNDNDSHLTDEEYLEAHPELRPVVVIDNYLHNASESSVVYDKITEWAAGLTA  467
             + LE  KK D D++L +E+YLEAHPE +PVVVIDN+LH A E+  VY K+ EWAA L  
Sbjct  121  DIALEEYKKEDKDANLKEEDYLEAHPEAKPVVVIDNFLHKAEENGFVYKKLAEWAASLVQ  180

Query  468  GNIAHVIFLTTDVSYAKPLSKALPNSVFRTITLGDCSLEVGRKFVMSHLAYE-------S  520
             NIAHVIFLT DVSY+KPLSKALPN VF+TI+LGD S +V RK+V+S L  +       S
Sbjct  181  NNIAHVIFLTEDVSYSKPLSKALPNQVFKTISLGDASPDVARKYVLSQLDEDTRKEENSS  240

Query  521  KDGKTQPRRA----EELEDLDACIEALGGRVTDLEFMAHRIEAGETPRGTSRARALVTFY  576
             +  T  + A    ++L++LD+CIE LGGR+TDL+  A RI++GE+P             
Sbjct  241  DEQNTDDKAATANEKDLKELDSCIEPLGGRMTDLQAFARRIKSGESPS------------  288

Query  577  ARLLTYAQGAVNRIIEQSASEILKMFLLT-PETIEQSWTHEQAWYLIKRLAESKDGSLSY  635
                     AVN IIEQSASEILKMFLL   +  +  WT EQAWYLIK L  SK+GS+ Y
Sbjct  289  --------EAVNDIIEQSASEILKMFLLDSGDASDLPWTPEQAWYLIKLL--SKNGSIPY  338

Query  636  NEIVLSELFKENGEITLRALEHAELISIAAVNGCPQRIRPGKPVLRAVFKKVTENKALSS  695
            NE++LS LFK +GE  LRALE AELIS+   NG P  IRPGKPV RA FK++  +K LSS
Sbjct  339  NELLLSPLFKGSGETALRALEQAELISVTRDNGRPSTIRPGKPVYRAAFKRLLNDKVLSS  398

Query  696  RMDLAIIAKKINKENKSIEKYEEELSLLGSL  726
            R+DL  +   I KENK I+KYEEEL LLG L
Sbjct  399  RLDLEYLTALIAKENKKIKKYEEELRLLGKL  429



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 961855472


Query= TCONS_00007089

Length=692
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371055 pfam10443, RNA12, RNA12 protein. This family includes ...  652     0.0  


>CDD:371055 pfam10443, RNA12, RNA12 protein.  This family includes RNA12 
from S. cerevisiae. That protein contains an RRM domain. This 
region is C-terminal to that and includes a P-loop motif suggesting 
this region binds to NTP. The RNA12 proteins is involved 
in pre-rRNA maturation.
Length=429

 Score = 652 bits (1684),  Expect = 0.0, Method: Composition-based stats.
 Identities = 242/407 (59%), Positives = 290/407 (71%), Gaps = 34/407 (8%)

Query  288  RQEDITRLQSWLMENVETFIIIHGPRGSGKRELVLDRALVDYKYKIVIDCKQIQDARGDS  347
            R+E I +LQ WL+ENV TFI++ GPRGSGKRELV+DR L D K  +VIDC Q+Q ARGD+
Sbjct  1    RKEKIEQLQEWLLENVNTFIVVQGPRGSGKRELVMDRVLKDRKNVLVIDCDQLQKARGDA  60

Query  348  AKIARAASQVGYRPVFSWMNSISSFIDLAAQGMIGTKAGFSETLDAQLSNIWQNTATALK  407
              I+ AASQVGY PVFSWMNSISS IDLAAQG+ G KAGFSET +AQL NI Q TATALK
Sbjct  61   GFISTAASQVGYFPVFSWMNSISSLIDLAAQGLTGQKAGFSETKEAQLRNILQTTATALK  120

Query  408  KVTLEHRKKNDNDSHLTDEEYLEAHPELRPVVVIDNYLHNASESSVVYDKITEWAAGLTA  467
             + LE  KK D D++L +E+YLEAHPE +PVVVIDN+LH A E+  VY K+ EWAA L  
Sbjct  121  DIALEEYKKEDKDANLKEEDYLEAHPEAKPVVVIDNFLHKAEENGFVYKKLAEWAASLVQ  180

Query  468  GNIAHVIFLTTDVSYAKPLSKALPNSVFRTITLGDCSLEVGRKFVMSHLAYE-------S  520
             NIAHVIFLT DVSY+KPLSKALPN VF+TI+LGD S +V RK+V+S L  +       S
Sbjct  181  NNIAHVIFLTEDVSYSKPLSKALPNQVFKTISLGDASPDVARKYVLSQLDEDTRKEENSS  240

Query  521  KDGKTQPRRA----EELEDLDACIEALGGRVTDLEFMAHRIEAGETPRGTSRARALVTFY  576
             +  T  + A    ++L++LD+CIE LGGR+TDL+  A RI++GE+P             
Sbjct  241  DEQNTDDKAATANEKDLKELDSCIEPLGGRMTDLQAFARRIKSGESPS------------  288

Query  577  ARLLTYAQGAVNRIIEQSASEILKMFLLT-PETIEQSWTHEQAWYLIKRLAESKDGSLSY  635
                     AVN IIEQSASEILKMFLL   +  +  WT EQAWYLIK L  SK+GS+ Y
Sbjct  289  --------EAVNDIIEQSASEILKMFLLDSGDASDLPWTPEQAWYLIKLL--SKNGSIPY  338

Query  636  NEIVLSELFKENGEITLRALEHAELISIAAVNGCPQRIRPGKPVLRA  682
            NE++LS LFK +GE  LRALE AELIS+   NG P  IRPGKPV RA
Sbjct  339  NELLLSPLFKGSGETALRALEQAELISVTRDNGRPSTIRPGKPVYRA  385



Lambda      K        H        a         alpha
   0.319    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 883399210


Query= TCONS_00001305

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:434132 pfam14691, Fer4_20, Dihydroprymidine dehydrogenase dom...  108     8e-29
CDD:460231 pfam01493, GXGXG, GXGXG motif. This domain is found in...  105     7e-27
CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  109     7e-27


>CDD:434132 pfam14691, Fer4_20, Dihydroprymidine dehydrogenase domain II, 
4Fe-4S cluster.  Domain II of the enzyme dihydroprymidine dehydrogenase 
binds FAD. Dihydroprymidine dehydrogenase catalyzes 
the first and rate-limiting step of pyrimidine degradation 
by converting pyrimidines to the corresponding 5,6- dihydro 
compounds. This domain carries two Fe4-S4 clusters.
Length=113

 Score = 108 bits (273),  Expect = 8e-29, Method: Composition-based stats.
 Identities = 40/115 (35%), Positives = 61/115 (53%), Gaps = 5/115 (4%)

Query  183  RTRDWAELSSRLSEDELKYQSARCMDCGVPFCQSDTGCPISNIIPKWNELVFANQWQDAL  242
            R +++ E++   +E+E   +++RC+ C  P C    GCP+   IP++ +L+    ++ A 
Sbjct  1    RIKNFEEVALGYTEEEAIAEASRCLQCKDPPCV--KGCPVHIDIPEFIKLIAEGNFEGAA  58

Query  243  NRLLMTNNFPEFTGRVCPA--PCEGACVLGI-NEDPVGIKSIECAIIDRGFEMGW  294
              +L TN  P   GRVCP    CEGACVLG    +PV I  +E    D   E G 
Sbjct  59   RIILETNPLPAICGRVCPQERQCEGACVLGKKGFEPVAIGRLERFAADWARENGI  113


>CDD:460231 pfam01493, GXGXG, GXGXG motif.  This domain is found in glutamate 
synthase, tungsten formylmethanofuran dehydrogenase subunit 
c (FwdC) and molybdenum formylmethanofuran dehydrogenase 
subunit c (FmdC). A repeated G-XX-G-XXX-G motif is seen in 
the alignment.
Length=190

 Score = 105 bits (266),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 42/55 (76%), Gaps = 0/55 (0%)

Query  1    MTGGRVLILGSTGRNFAAGMSGGIAYVLDMNQDFLSKVNMEMVEVSGLEDPAEIA  55
            MTGGRV++LG TGRNF AGMSGGIAYVLD + DF  K+N EMVE+  + D  E A
Sbjct  136  MTGGRVVVLGKTGRNFGAGMSGGIAYVLDEDGDFPEKLNKEMVELERVTDEDEEA  190


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 109 bits (274),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 84/340 (25%), Positives = 121/340 (36%), Gaps = 81/340 (24%)

Query  308  VAIIGSGPAGLAAADQLNRAGHSVTVYERADRI---GGLLMYGIPNMKLDKKIVQRRVDL  364
            V +IG GPAGLAAA  L + G  VT+ E        G +L   +       +I     DL
Sbjct  3    VVVIGGGPAGLAAALTLAQLGGKVTLIEDEGTCPYGGCVLSKALLGAAEAPEIASLWADL  62

Query  365  MA---------AEGIKFVTN---TAVGPDN-EVSLNSLRQSN------DAVIIATGATVA  405
                         GI+ +      ++ P   +V L  L   +      D ++IATGA   
Sbjct  63   YKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEELVDGDGETITYDRLVIATGAR-P  121

Query  406  RDLKVPGRELDGVHFAMQFLHRNTKSLLDSGLSDGEYISAK--DKHVVVIGGGDTGNDCI  463
            R   +PG EL+                L   L   E +  K   K VVV+GGG  G +  
Sbjct  122  RLPPIPGVELNVGF-------------LVRTLDSAEALRLKLLPKRVVVVGGGYIGVELA  168

Query  464  GTSVRHGAKSVVNFELLPQPPP---ERARDNPWPQWPRIYRVDYGHSEVKTHMGKDPREY  520
                + G + V   E L +      E                    + V+  +G      
Sbjct  169  AALAKLGKE-VTLIEALDRLLRAFDEEISA--------ALEKALEKNGVEVRLG------  213

Query  521  CVMSTEFVDDGNGHVKGINTVRVEWTKSASGGWDMKTIEGSEQFFPADLVLLSMGFLGPE  580
                 E + DG+G                      + I        ADLV++++G   P 
Sbjct  214  -TSVKEIIGDGDGV---------------------EVILKDGTEIDADLVVVAIGR-RPN  250

Query  581  DRLLGNE-IERDARKNVKTPPGHYSTSVSGVFAAGDCRRG  619
              LL    +E D R  +     +  TSV G++AAGDCR G
Sbjct  251  TELLEAAGLELDERGGIVVDE-YLRTSVPGIYAAGDCRVG  289



Lambda      K        H        a         alpha
   0.317    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784588280


Query= TCONS_00007090

Length=763
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460231 pfam01493, GXGXG, GXGXG motif. This domain is found in...  362     3e-122
CDD:434132 pfam14691, Fer4_20, Dihydroprymidine dehydrogenase dom...  108     2e-28 
CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  106     8e-26 


>CDD:460231 pfam01493, GXGXG, GXGXG motif.  This domain is found in glutamate 
synthase, tungsten formylmethanofuran dehydrogenase subunit 
c (FwdC) and molybdenum formylmethanofuran dehydrogenase 
subunit c (FmdC). A repeated G-XX-G-XXX-G motif is seen in 
the alignment.
Length=190

 Score = 362 bits (931),  Expect = 3e-122, Method: Composition-based stats.
 Identities = 127/182 (70%), Positives = 146/182 (80%), Gaps = 0/182 (0%)

Query  12   ALGATLSYQVSRRYGGAGLPQDTIHANIKGSAGQSFGAFLAPGITLELEGDANDYVGKGL  71
            ++G  LS ++++RYG  GLP DTI     GSAGQSFGAFL  G+TLELEGDANDYVGKGL
Sbjct  9    SVGTILSGEIAKRYGEDGLPDDTITIKFNGSAGQSFGAFLPKGLTLELEGDANDYVGKGL  68

Query  72   SGGRLIVYPPRGAAYKAEENIIIGNTCLYGATRGTCYFRGVAAERFAVRNSGATAVVEGV  131
            SGG++I+YPP  + +KAEENIIIGNTCLYGAT G  +  G A ERFAVRNSGATAVVEGV
Sbjct  69   SGGKIIIYPPAESTFKAEENIIIGNTCLYGATGGELFINGRAGERFAVRNSGATAVVEGV  128

Query  132  GDHGCEYMTGGRVLILGSTGRNFAAGMSGGIAYVLDMNQDFLSKVNMEMVEVSGLEDPAE  191
            GDHGCEYMTGGRV++LG TGRNF AGMSGGIAYVLD + DF  K+N EMVE+  + D  E
Sbjct  129  GDHGCEYMTGGRVVVLGKTGRNFGAGMSGGIAYVLDEDGDFPEKLNKEMVELERVTDEDE  188

Query  192  IA  193
             A
Sbjct  189  EA  190


>CDD:434132 pfam14691, Fer4_20, Dihydroprymidine dehydrogenase domain II, 
4Fe-4S cluster.  Domain II of the enzyme dihydroprymidine dehydrogenase 
binds FAD. Dihydroprymidine dehydrogenase catalyzes 
the first and rate-limiting step of pyrimidine degradation 
by converting pyrimidines to the corresponding 5,6- dihydro 
compounds. This domain carries two Fe4-S4 clusters.
Length=113

 Score = 108 bits (271),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 40/115 (35%), Positives = 61/115 (53%), Gaps = 5/115 (4%)

Query  321  RTRDWAELSSRLSEDELKYQSARCMDCGVPFCQSDTGCPISNIIPKWNELVFANQWQDAL  380
            R +++ E++   +E+E   +++RC+ C  P C    GCP+   IP++ +L+    ++ A 
Sbjct  1    RIKNFEEVALGYTEEEAIAEASRCLQCKDPPCV--KGCPVHIDIPEFIKLIAEGNFEGAA  58

Query  381  NRLLMTNNFPEFTGRVCPA--PCEGACVLGI-NEDPVGIKSIECAIIDRGFEMGW  432
              +L TN  P   GRVCP    CEGACVLG    +PV I  +E    D   E G 
Sbjct  59   RIILETNPLPAICGRVCPQERQCEGACVLGKKGFEPVAIGRLERFAADWARENGI  113


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 106 bits (267),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 84/340 (25%), Positives = 121/340 (36%), Gaps = 81/340 (24%)

Query  446  VAIIGSGPAGLAAADQLNRAGHSVTVYERADRI---GGLLMYGIPNMKLDKKIVQRRVDL  502
            V +IG GPAGLAAA  L + G  VT+ E        G +L   +       +I     DL
Sbjct  3    VVVIGGGPAGLAAALTLAQLGGKVTLIEDEGTCPYGGCVLSKALLGAAEAPEIASLWADL  62

Query  503  MA---------AEGIKFVTN---TAVGPDN-EVSLNSLRQSN------DAVIIATGATVA  543
                         GI+ +      ++ P   +V L  L   +      D ++IATGA   
Sbjct  63   YKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEELVDGDGETITYDRLVIATGAR-P  121

Query  544  RDLKVPGRELDGVHFAMQFLHRNTKSLLDSGLSDGEYISAK--DKHVVVIGGGDTGNDCI  601
            R   +PG EL+                L   L   E +  K   K VVV+GGG  G +  
Sbjct  122  RLPPIPGVELNVGF-------------LVRTLDSAEALRLKLLPKRVVVVGGGYIGVELA  168

Query  602  GTSVRHGAKSVVNFELLPQPPP---ERARDNPWPQWPRIYRVDYGHSEVKTHMGKDPREY  658
                + G + V   E L +      E                    + V+  +G      
Sbjct  169  AALAKLGKE-VTLIEALDRLLRAFDEEISA--------ALEKALEKNGVEVRLG------  213

Query  659  CVMSTEFVDDGNGHVKGINTVRVEWTKSASGGWDMKTIEGSEQFFPADLVLLSMGFLGPE  718
                 E + DG+G                      + I        ADLV++++G   P 
Sbjct  214  -TSVKEIIGDGDGV---------------------EVILKDGTEIDADLVVVAIGR-RPN  250

Query  719  DRLLGNE-IERDARKNVKTPPGHYSTSVSGVFAAGDCRRG  757
              LL    +E D R  +     +  TSV G++AAGDCR G
Sbjct  251  TELLEAAGLELDERGGIVVDE-YLRTSVPGIYAAGDCRVG  289



Lambda      K        H        a         alpha
   0.317    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 973496688


Query= TCONS_00007091

Length=892
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460231 pfam01493, GXGXG, GXGXG motif. This domain is found in...  379     2e-127
CDD:434132 pfam14691, Fer4_20, Dihydroprymidine dehydrogenase dom...  107     4e-28 
CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  106     1e-25 
CDD:396287 pfam01645, Glu_synthase, Conserved region in glutamate...  93.6    8e-21 


>CDD:460231 pfam01493, GXGXG, GXGXG motif.  This domain is found in glutamate 
synthase, tungsten formylmethanofuran dehydrogenase subunit 
c (FwdC) and molybdenum formylmethanofuran dehydrogenase 
subunit c (FmdC). A repeated G-XX-G-XXX-G motif is seen in 
the alignment.
Length=190

 Score = 379 bits (976),  Expect = 2e-127, Method: Composition-based stats.
 Identities = 132/190 (69%), Positives = 152/190 (80%), Gaps = 0/190 (0%)

Query  133  CDIVNTDRALGATLSYQVSRRYGGAGLPQDTIHANIKGSAGQSFGAFLAPGITLELEGDA  192
             +I NTDR++G  LS ++++RYG  GLP DTI     GSAGQSFGAFL  G+TLELEGDA
Sbjct  1    YEIRNTDRSVGTILSGEIAKRYGEDGLPDDTITIKFNGSAGQSFGAFLPKGLTLELEGDA  60

Query  193  NDYVGKGLSGGRLIVYPPRGAAYKAEENIIIGNTCLYGATRGTCYFRGVAAERFAVRNSG  252
            NDYVGKGLSGG++I+YPP  + +KAEENIIIGNTCLYGAT G  +  G A ERFAVRNSG
Sbjct  61   NDYVGKGLSGGKIIIYPPAESTFKAEENIIIGNTCLYGATGGELFINGRAGERFAVRNSG  120

Query  253  ATAVVEGVGDHGCEYMTGGRVLILGSTGRNFAAGMSGGIAYVLDMNQDFLSKVNMEMVEV  312
            ATAVVEGVGDHGCEYMTGGRV++LG TGRNF AGMSGGIAYVLD + DF  K+N EMVE+
Sbjct  121  ATAVVEGVGDHGCEYMTGGRVVVLGKTGRNFGAGMSGGIAYVLDEDGDFPEKLNKEMVEL  180

Query  313  SGLEDPAEIA  322
              + D  E A
Sbjct  181  ERVTDEDEEA  190


>CDD:434132 pfam14691, Fer4_20, Dihydroprymidine dehydrogenase domain II, 
4Fe-4S cluster.  Domain II of the enzyme dihydroprymidine dehydrogenase 
binds FAD. Dihydroprymidine dehydrogenase catalyzes 
the first and rate-limiting step of pyrimidine degradation 
by converting pyrimidines to the corresponding 5,6- dihydro 
compounds. This domain carries two Fe4-S4 clusters.
Length=113

 Score = 107 bits (269),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 40/115 (35%), Positives = 61/115 (53%), Gaps = 5/115 (4%)

Query  450  RTRDWAELSSRLSEDELKYQSARCMDCGVPFCQSDTGCPISNIIPKWNELVFANQWQDAL  509
            R +++ E++   +E+E   +++RC+ C  P C    GCP+   IP++ +L+    ++ A 
Sbjct  1    RIKNFEEVALGYTEEEAIAEASRCLQCKDPPCV--KGCPVHIDIPEFIKLIAEGNFEGAA  58

Query  510  NRLLMTNNFPEFTGRVCPA--PCEGACVLGI-NEDPVGIKSIECAIIDRGFEMGW  561
              +L TN  P   GRVCP    CEGACVLG    +PV I  +E    D   E G 
Sbjct  59   RIILETNPLPAICGRVCPQERQCEGACVLGKKGFEPVAIGRLERFAADWARENGI  113


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 106 bits (267),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 84/340 (25%), Positives = 121/340 (36%), Gaps = 81/340 (24%)

Query  575  VAIIGSGPAGLAAADQLNRAGHSVTVYERADRI---GGLLMYGIPNMKLDKKIVQRRVDL  631
            V +IG GPAGLAAA  L + G  VT+ E        G +L   +       +I     DL
Sbjct  3    VVVIGGGPAGLAAALTLAQLGGKVTLIEDEGTCPYGGCVLSKALLGAAEAPEIASLWADL  62

Query  632  MA---------AEGIKFVTN---TAVGPDN-EVSLNSLRQSN------DAVIIATGATVA  672
                         GI+ +      ++ P   +V L  L   +      D ++IATGA   
Sbjct  63   YKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEELVDGDGETITYDRLVIATGAR-P  121

Query  673  RDLKVPGRELDGVHFAMQFLHRNTKSLLDSGLSDGEYISAK--DKHVVVIGGGDTGNDCI  730
            R   +PG EL+                L   L   E +  K   K VVV+GGG  G +  
Sbjct  122  RLPPIPGVELNVGF-------------LVRTLDSAEALRLKLLPKRVVVVGGGYIGVELA  168

Query  731  GTSVRHGAKSVVNFELLPQPPP---ERARDNPWPQWPRIYRVDYGHSEVKTHMGKDPREY  787
                + G + V   E L +      E                    + V+  +G      
Sbjct  169  AALAKLGKE-VTLIEALDRLLRAFDEEISA--------ALEKALEKNGVEVRLG------  213

Query  788  CVMSTEFVDDGNGHVKGINTVRVEWTKSASGGWDMKTIEGSEQFFPADLVLLSMGFLGPE  847
                 E + DG+G                      + I        ADLV++++G   P 
Sbjct  214  -TSVKEIIGDGDGV---------------------EVILKDGTEIDADLVVVAIGR-RPN  250

Query  848  DRLLGNE-IERDARKNVKTPPGHYSTSVSGVFAAGDCRRG  886
              LL    +E D R  +     +  TSV G++AAGDCR G
Sbjct  251  TELLEAAGLELDERGGIVVDE-YLRTSVPGIYAAGDCRVG  289


>CDD:396287 pfam01645, Glu_synthase, Conserved region in glutamate synthase. 
 This family represents a region of the glutamate synthase 
protein. This region is expressed as a separate subunit in 
the glutamate synthase alpha subunit from archaebacteria, 
or part of a large multidomain enzyme in other organisms. The 
aligned region of these proteins contains a putative FMN binding 
site and Fe-S cluster.
Length=367

 Score = 93.6 bits (233),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 41/55 (75%), Gaps = 2/55 (4%)

Query  1    MMRKCHLNTCPVGIATQDPELR--QKFKGTPEHVINFFYYVANEMRAIMAKLGIR  53
            M R CH NTCPVG+ATQDPELR    F+G PE V+N+F ++A E+R ++A LGI 
Sbjct  313  MCRVCHTNTCPVGVATQDPELRKRLDFEGAPERVVNYFRFLAEEVRELLAALGIN  367



Lambda      K        H        a         alpha
   0.318    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0692    0.140     1.90     42.6     43.6 

Effective search space used: 1144104658


Query= TCONS_00001306

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:434132 pfam14691, Fer4_20, Dihydroprymidine dehydrogenase dom...  108     8e-29
CDD:460231 pfam01493, GXGXG, GXGXG motif. This domain is found in...  105     7e-27
CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  109     7e-27


>CDD:434132 pfam14691, Fer4_20, Dihydroprymidine dehydrogenase domain II, 
4Fe-4S cluster.  Domain II of the enzyme dihydroprymidine dehydrogenase 
binds FAD. Dihydroprymidine dehydrogenase catalyzes 
the first and rate-limiting step of pyrimidine degradation 
by converting pyrimidines to the corresponding 5,6- dihydro 
compounds. This domain carries two Fe4-S4 clusters.
Length=113

 Score = 108 bits (273),  Expect = 8e-29, Method: Composition-based stats.
 Identities = 40/115 (35%), Positives = 61/115 (53%), Gaps = 5/115 (4%)

Query  183  RTRDWAELSSRLSEDELKYQSARCMDCGVPFCQSDTGCPISNIIPKWNELVFANQWQDAL  242
            R +++ E++   +E+E   +++RC+ C  P C    GCP+   IP++ +L+    ++ A 
Sbjct  1    RIKNFEEVALGYTEEEAIAEASRCLQCKDPPCV--KGCPVHIDIPEFIKLIAEGNFEGAA  58

Query  243  NRLLMTNNFPEFTGRVCPA--PCEGACVLGI-NEDPVGIKSIECAIIDRGFEMGW  294
              +L TN  P   GRVCP    CEGACVLG    +PV I  +E    D   E G 
Sbjct  59   RIILETNPLPAICGRVCPQERQCEGACVLGKKGFEPVAIGRLERFAADWARENGI  113


>CDD:460231 pfam01493, GXGXG, GXGXG motif.  This domain is found in glutamate 
synthase, tungsten formylmethanofuran dehydrogenase subunit 
c (FwdC) and molybdenum formylmethanofuran dehydrogenase 
subunit c (FmdC). A repeated G-XX-G-XXX-G motif is seen in 
the alignment.
Length=190

 Score = 105 bits (266),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 42/55 (76%), Gaps = 0/55 (0%)

Query  1    MTGGRVLILGSTGRNFAAGMSGGIAYVLDMNQDFLSKVNMEMVEVSGLEDPAEIA  55
            MTGGRV++LG TGRNF AGMSGGIAYVLD + DF  K+N EMVE+  + D  E A
Sbjct  136  MTGGRVVVLGKTGRNFGAGMSGGIAYVLDEDGDFPEKLNKEMVELERVTDEDEEA  190


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 109 bits (274),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 84/340 (25%), Positives = 121/340 (36%), Gaps = 81/340 (24%)

Query  308  VAIIGSGPAGLAAADQLNRAGHSVTVYERADRI---GGLLMYGIPNMKLDKKIVQRRVDL  364
            V +IG GPAGLAAA  L + G  VT+ E        G +L   +       +I     DL
Sbjct  3    VVVIGGGPAGLAAALTLAQLGGKVTLIEDEGTCPYGGCVLSKALLGAAEAPEIASLWADL  62

Query  365  MA---------AEGIKFVTN---TAVGPDN-EVSLNSLRQSN------DAVIIATGATVA  405
                         GI+ +      ++ P   +V L  L   +      D ++IATGA   
Sbjct  63   YKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEELVDGDGETITYDRLVIATGAR-P  121

Query  406  RDLKVPGRELDGVHFAMQFLHRNTKSLLDSGLSDGEYISAK--DKHVVVIGGGDTGNDCI  463
            R   +PG EL+                L   L   E +  K   K VVV+GGG  G +  
Sbjct  122  RLPPIPGVELNVGF-------------LVRTLDSAEALRLKLLPKRVVVVGGGYIGVELA  168

Query  464  GTSVRHGAKSVVNFELLPQPPP---ERARDNPWPQWPRIYRVDYGHSEVKTHMGKDPREY  520
                + G + V   E L +      E                    + V+  +G      
Sbjct  169  AALAKLGKE-VTLIEALDRLLRAFDEEISA--------ALEKALEKNGVEVRLG------  213

Query  521  CVMSTEFVDDGNGHVKGINTVRVEWTKSASGGWDMKTIEGSEQFFPADLVLLSMGFLGPE  580
                 E + DG+G                      + I        ADLV++++G   P 
Sbjct  214  -TSVKEIIGDGDGV---------------------EVILKDGTEIDADLVVVAIGR-RPN  250

Query  581  DRLLGNE-IERDARKNVKTPPGHYSTSVSGVFAAGDCRRG  619
              LL    +E D R  +     +  TSV G++AAGDCR G
Sbjct  251  TELLEAAGLELDERGGIVVDE-YLRTSVPGIYAAGDCRVG  289



Lambda      K        H        a         alpha
   0.317    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784588280


Query= TCONS_00007092

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399091 pfam05841, Apc15p, Apc15p protein. The anaphase-promot...  61.7    2e-12


>CDD:399091 pfam05841, Apc15p, Apc15p protein.  The anaphase-promoting complex 
(APC) is a conserved multi-subunit ubiquitin ligase required 
for the degradation of key cell cycle regulators Members 
of this family are components of the anaphase-promoting 
complex homologous to Apc15p.
Length=118

 Score = 61.7 bits (150),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 0/62 (0%)

Query  39   HGHPRRNGHNALNGRAATTPGNSLSSLQLEERALHARKNNIASFGYSWIKPAGCSKTMLG  98
               P  + +NA+        G  L  L++ E  +  R N I + G +W+KP G +KTM  
Sbjct  53   GYAPPLSAYNAIEESPYYPRGGKLDRLRMREEQMERRLNAIRNLGSNWLKPIGVNKTMFQ  112

Query  99   MK  100
            ++
Sbjct  113  IR  114



Lambda      K        H        a         alpha
   0.309    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00007093

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.152    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00001307

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.152    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00001308

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.117    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00001309

Length=638
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  933     0.0  


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 933 bits (2415),  Expect = 0.0, Method: Composition-based stats.
 Identities = 365/603 (61%), Positives = 440/603 (73%), Gaps = 15/603 (2%)

Query  4    AVGIDLGTTYSCVGVFRDDRIEIIANDQGNRTTPSFVAFTDTERLIGDAAKNQVAMNPHN  63
             +GIDLGTT SCV V      E+IAN +GNRTTPS VAFT  ERL+G AAKNQ   NP N
Sbjct  1    VIGIDLGTTNSCVAVMEGGGPEVIANAEGNRTTPSVVAFTPKERLVGQAAKNQAVTNPKN  60

Query  64   TVFDAKRLIGRRFQDAEVQSDMKHWPFKVVEK-GGKPIIEVEFKGETKQFTPEEISSMVL  122
            TVF  KRLIGR+F D  VQ D+KH P+KVV+   G   +EV + GE   FTPE+IS+M+L
Sbjct  61   TVFSVKRLIGRKFSDPVVQRDIKHLPYKVVKLPNGDAGVEVRYLGE--TFTPEQISAMIL  118

Query  123  TKMRETAEAYLGGTVNNAVITVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYG  182
             K++ETAEAYLG  V +AVITVPAYFND+QRQATKDAG IAGLNVLRI+NEPTAAA+AYG
Sbjct  119  QKLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGQIAGLNVLRIVNEPTAAALAYG  178

Query  183  LDKKAEGERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVNE  242
            LDK  + ERN+ ++DLGGGTFDVS+L I  G+FEVKAT GDTHLGGEDFD RLV+H   E
Sbjct  179  LDKT-DKERNIAVYDLGGGTFDVSILEIGRGVFEVKATNGDTHLGGEDFDLRLVDHLAEE  237

Query  243  FKRKHKKDLTTNARALRRLRTACERAKRTLSSAA-QTSIEIDSLFE-GIDFYTSITRARF  300
            FK+K+  DL+ + RAL+RLR A E+AK  LSS     ++   +    G D   ++TRA+F
Sbjct  238  FKKKYGIDLSKDKRALQRLREAAEKAKIELSSNQTNINLPFITAMADGKDVSGTLTRAKF  297

Query  301  EELCQDLFRSTMEPVERVLRDAKLDKSSVHEIVLVGGSTRIPKIQRLVADFFNKEANKSI  360
            EEL  DLF  T+EPVE+ L+DA L KS + E+VLVGGSTRIP +Q LV +FF KE +K +
Sbjct  298  EELVADLFERTLEPVEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGV  357

Query  361  NPDEAVAYGAAVQAAILSGDTSSKSTNEILLLDVAPLSLGIETAGGVMTPLIKRNTTIPT  420
            NPDEAVA GAAVQA +LSG    K   + LLLDV PLSLGIET GGVMT LI RNTTIPT
Sbjct  358  NPDEAVAIGAAVQAGVLSGTFDVK---DFLLLDVTPLSLGIETLGGVMTKLIPRNTTIPT  414

Query  421  KKSETFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQIEVTFDVDA  480
            KKS+ FST +DNQ  V IQVY+GER    DN LLG FEL GIPPAPRGVPQIEVTFD+DA
Sbjct  415  KKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDA  474

Query  481  NGIMNVSAVEKGTGKTNKITITNDKGRLSKEEIERMLADAEKYKEEDEAEAARIQAKNGL  540
            NGI+ VSA +KGTGK  +ITI   +G LS +EIERM+ DAE+Y EED+    RI+AKN  
Sbjct  475  NGILTVSAKDKGTGKEQEITIEASEG-LSDDEIERMVKDAEEYAEEDKKRKERIEAKNEA  533

Query  541  ESYAYSLKNTISEGKLNISDADKEKVSSKVEEIISWL-DNNQTATKDEYESQQKELESVA  599
            E Y YSL+ ++ E    + +A+K KV S +E    WL D  +   K+E E++ +EL  V+
Sbjct  534  EEYVYSLEKSLEEEGDKVPEAEKSKVESAIE----WLKDELEGDDKEEIEAKTEELAQVS  589

Query  600  NPI  602
              I
Sbjct  590  QKI  592



Lambda      K        H        a         alpha
   0.313    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 803760550


Query= TCONS_00007094

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  412     1e-142


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 412 bits (1061),  Expect = 1e-142, Method: Composition-based stats.
 Identities = 173/295 (59%), Positives = 210/295 (71%), Gaps = 9/295 (3%)

Query  1    MEPVERVLRDAKLDKSSVHEIVLVGGSTRIPKIQRLVADFFNKEANKSINPDEAVAYGAA  60
            +EPVE+ L+DA L KS + E+VLVGGSTRIP +Q LV +FF KE +K +NPDEAVA GAA
Sbjct  309  LEPVEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGVNPDEAVAIGAA  368

Query  61   VQAAILSGDTSSKSTNEILLLDVAPLSLGIETAGGVMTPLIKRNTTIPTKKSETFSTYSD  120
            VQA +LSG    K   + LLLDV PLSLGIET GGVMT LI RNTTIPTKKS+ FST +D
Sbjct  369  VQAGVLSGTFDVK---DFLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQIFSTAAD  425

Query  121  NQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQIEVTFDVDANGIMNVSAVEK  180
            NQ  V IQVY+GER    DN LLG FEL GIPPAPRGVPQIEVTFD+DANGI+ VSA +K
Sbjct  426  NQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGILTVSAKDK  485

Query  181  GTGKTNKITITNDKGRLSKEEIERMLADAEKYKEEDEAEAARIQAKNGLESYAYSLKNTI  240
            GTGK  +ITI   +G LS +EIERM+ DAE+Y EED+    RI+AKN  E Y YSL+ ++
Sbjct  486  GTGKEQEITIEASEG-LSDDEIERMVKDAEEYAEEDKKRKERIEAKNEAEEYVYSLEKSL  544

Query  241  SEGKLNISDADKEKVSSKVEEIISWL-DNNQTATKDEYESQQKELESVANPIISA  294
             E    + +A+K KV S +E    WL D  +   K+E E++ +EL  V+  I   
Sbjct  545  EEEGDKVPEAEKSKVESAIE----WLKDELEGDDKEEIEAKTEELAQVSQKIGER  595



Lambda      K        H        a         alpha
   0.307    0.127    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00007095

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  410     4e-141


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 410 bits (1055),  Expect = 4e-141, Method: Composition-based stats.
 Identities = 173/292 (59%), Positives = 210/292 (72%), Gaps = 9/292 (3%)

Query  1    MEPVERVLRDAKLDKSSVHEIVLVGGSTRIPKIQRLVADFFNKEANKSINPDEAVAYGAA  60
            +EPVE+ L+DA L KS + E+VLVGGSTRIP +Q LV +FF KE +K +NPDEAVA GAA
Sbjct  309  LEPVEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGVNPDEAVAIGAA  368

Query  61   VQAAILSGDTSSKSTNEILLLDVAPLSLGIETAGGVMTPLIKRNTTIPTKKSETFSTYSD  120
            VQA +LSG    K   + LLLDV PLSLGIET GGVMT LI RNTTIPTKKS+ FST +D
Sbjct  369  VQAGVLSGTFDVK---DFLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQIFSTAAD  425

Query  121  NQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQIEVTFDVDANGIMNVSAVEK  180
            NQ  V IQVY+GER    DN LLG FEL GIPPAPRGVPQIEVTFD+DANGI+ VSA +K
Sbjct  426  NQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGILTVSAKDK  485

Query  181  GTGKTNKITITNDKGRLSKEEIERMLADAEKYKEEDEAEAARIQAKNGLESYAYSLKNTI  240
            GTGK  +ITI   +G LS +EIERM+ DAE+Y EED+    RI+AKN  E Y YSL+ ++
Sbjct  486  GTGKEQEITIEASEG-LSDDEIERMVKDAEEYAEEDKKRKERIEAKNEAEEYVYSLEKSL  544

Query  241  SEGKLNISDADKEKVSSKVEEIISWL-DNNQTATKDEYESQQKELESVANPI  291
             E    + +A+K KV S +E    WL D  +   K+E E++ +EL  V+  I
Sbjct  545  EEEGDKVPEAEKSKVESAIE----WLKDELEGDDKEEIEAKTEELAQVSQKI  592



Lambda      K        H        a         alpha
   0.307    0.127    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00001310

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460116 pfam01218, Coprogen_oxidas, Coproporphyrinogen III oxi...  553     0.0  


>CDD:460116 pfam01218, Coprogen_oxidas, Coproporphyrinogen III oxidase.  

Length=293

 Score = 553 bits (1427),  Expect = 0.0, Method: Composition-based stats.
 Identities = 172/317 (54%), Positives = 207/317 (65%), Gaps = 34/317 (11%)

Query  106  RMEKLIKEHQQKIVNELSRIDGKM-FKTDTWTRPNGGGGISCVLQDGNVFEKAGVNVSIV  164
            R+E  + + Q +I   L  +DG   F+ D W RP GGGG S VLQDGNVFEKAGVN S+V
Sbjct  1    RVEAYLLDLQDEICAALEALDGGAKFREDAWERPEGGGGRSRVLQDGNVFEKAGVNFSVV  60

Query  165  YGELPRPAIEKMRADHKSFVGADVDSLSFFAAGLSLVLHPHNPMAPTVHLNYRYFETSDP  224
            +G+LP  A  +MR +        +  L FFA G+SLV+HP NP  PTVH NYRYFE  DP
Sbjct  61   HGKLPPSATAQMRPE--------LAGLPFFATGVSLVIHPRNPYVPTVHANYRYFEAEDP  112

Query  225  KDPIHGEKNWWFGGGTDLTPSYLFPEDVKHFHQTIKDACDRHDATYYPKFKAWCDKYFHL  284
                 G   WWFGGG DLTP YLF ED +HFH+T+KDACD H   YYP+FK WCD+YF++
Sbjct  113  G----GPPVWWFGGGADLTPYYLFEEDARHFHRTLKDACDPHGPDYYPRFKKWCDEYFYI  168

Query  285  PHRGEARGVGGIFFDDLDASFLETSSTSSQNPQETIFSFVSDALASFLPSYVPIIEKRKD  344
             HRGE RGVGGIFFDDL+  F            E +F+FV     +FLP+Y+PI+E+RKD
Sbjct  169  KHRGETRGVGGIFFDDLNEDF------------EELFAFVRSVGDAFLPAYLPIVERRKD  216

Query  345  MPFTPAQKEWQQLRRGRYVEFNLVYDRGTSFGLRTPNARVESILMSLPRTASWAYM-DPV  403
             P+T  +++WQ  RRGRYVEFNLVYDRGT FGL+T   R ESILMSLP TA W Y   P 
Sbjct  217  TPYTERERDWQLYRRGRYVEFNLVYDRGTKFGLQTG-GRTESILMSLPPTARWEYDHQPE  275

Query  404  SGTRTEGPMSEEEELLT  420
             G       S E +LL 
Sbjct  276  PG-------SPEAKLLE  285



Lambda      K        H        a         alpha
   0.319    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00001311

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426248 pfam01408, GFO_IDH_MocA, Oxidoreductase family, NAD-bi...  93.8    5e-24


>CDD:426248 pfam01408, GFO_IDH_MocA, Oxidoreductase family, NAD-binding Rossmann 
fold.  This family of enzymes utilize NADP or NAD. This 
family is called the GFO/IDH/MOCA family in swiss-prot.
Length=120

 Score = 93.8 bits (234),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 44/131 (34%), Positives = 61/131 (47%), Gaps = 12/131 (9%)

Query  6    VRWGIMATGWIADIFVRDLLRDPNLRDASDVSHTVVAVASSSAKDRAEKFIADTGIPAPC  65
            +R GI+  G I     R L               +VA+   +++ RAE      G+    
Sbjct  1    IRVGIIGAGKIGSKHARALNASQPG-------AELVAILDPNSE-RAEAVAESFGVEV--  50

Query  66   AAYGSYEELVADANVDVVYVATPHSHHFQNVMLALEAGKNVLCEKAFTVNAAQAKILCET  125
              Y   EEL+ D  +D V VATP+  H+   + ALEAGK+VLCEK       +AK L E 
Sbjct  51   --YSDLEELLNDPEIDAVIVATPNGLHYDLAIAALEAGKHVLCEKPLATTVEEAKELVEL  108

Query  126  AKKKNLFLMEA  136
            AKKK + +   
Sbjct  109  AKKKGVRVSVG  119



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00001312

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.138    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00001313

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00001314

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431919 pfam11526, CFIA_Pcf11, Subunit of cleavage factor IA P...  68.2    7e-15
CDD:461442 pfam04818, CTD_bind, RNA polymerase II-binding domain....  66.8    5e-14


>CDD:431919 pfam11526, CFIA_Pcf11, Subunit of cleavage factor IA Pcf11.  
Pcf11 is a subunit of an essential polyadenylation factor in 
Saccharomyces cerevisiae, CFIA. Pcf11 binds to Clp1, another 
subunit of CFIA whose interaction is responsible for maintaining 
a tight coupling between the Clp1 nucleotide binding 
subunit and the other components of the polyadenylation machinery.
Length=83

 Score = 68.2 bits (167),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 18/82 (22%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query  494  NQRMADAAKRAQNRSWYVDERDWIKSREAGDDE---DPAEAES-------TSAGAAGVEG  543
            N+++  + K  Q+R+WY+D+ +W+K ++         P +          T A ++    
Sbjct  1    NKKLTTSGKNIQSRNWYLDDSEWVKFKDDEIVSTSTSPDDTSQNASANASTQATSSSSSE  60

Query  544  DSAKKGPPKQWIRAPNDATLRN  565
             + K    K+++  P  AT  N
Sbjct  61   PNEKSALRKKYVVVPESATDMN  82


>CDD:461442 pfam04818, CTD_bind, RNA polymerase II-binding domain.  This 
domain binds to the phosphorylated C-terminal domain (CTD) of 
RNA polymerase II.
Length=117

 Score = 66.8 bits (164),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 28/108 (26%), Positives = 52/108 (48%), Gaps = 12/108 (11%)

Query  29   ISNLTVIAKENTEHAMAISRVLENHIRTTPPAQKLPALYVVDSIVKNV----GTPYTLFL  84
            I  L+     + +HA AI  V E +++   P +KL  LY+ + +++N      + +    
Sbjct  17   IQTLSKWILFHRKHAKAIVEVWEKYLKKAKPEKKLHLLYLANDVLQNSRKKGKSEFADAF  76

Query  85   GRNMYQTFMNAYTLVDSQTRRKLDEMLKTWKEPVPGSLDTRPVFPPEI  132
               + + F +AY   D + ++KL+ +L  W+E        R VF PE+
Sbjct  77   EPVLPEAFASAYKKCDEKLKKKLERLLNIWEE--------RNVFSPEV  116



Lambda      K        H        a         alpha
   0.312    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 827357190


Query= TCONS_00007097

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431919 pfam11526, CFIA_Pcf11, Subunit of cleavage factor IA P...  69.0    4e-15


>CDD:431919 pfam11526, CFIA_Pcf11, Subunit of cleavage factor IA Pcf11.  
Pcf11 is a subunit of an essential polyadenylation factor in 
Saccharomyces cerevisiae, CFIA. Pcf11 binds to Clp1, another 
subunit of CFIA whose interaction is responsible for maintaining 
a tight coupling between the Clp1 nucleotide binding 
subunit and the other components of the polyadenylation machinery.
Length=83

 Score = 69.0 bits (169),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 10/82 (12%)

Query  407  NQRMADAAKRAQNRSWYVDERDWIKSREAGDDE---DPAEAE-------STSAGAAGVEG  456
            N+++  + K  Q+R+WY+D+ +W+K ++         P +         ST A ++    
Sbjct  1    NKKLTTSGKNIQSRNWYLDDSEWVKFKDDEIVSTSTSPDDTSQNASANASTQATSSSSSE  60

Query  457  DSAKKGPPKQWIRAPNDATLRN  478
             + K    K+++  P  AT  N
Sbjct  61   PNEKSALRKKYVVVPESATDMN  82



Lambda      K        H        a         alpha
   0.312    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 709853300


Query= TCONS_00001315

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426248 pfam01408, GFO_IDH_MocA, Oxidoreductase family, NAD-bi...  93.8    5e-24


>CDD:426248 pfam01408, GFO_IDH_MocA, Oxidoreductase family, NAD-binding Rossmann 
fold.  This family of enzymes utilize NADP or NAD. This 
family is called the GFO/IDH/MOCA family in swiss-prot.
Length=120

 Score = 93.8 bits (234),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 44/131 (34%), Positives = 61/131 (47%), Gaps = 12/131 (9%)

Query  6    VRWGIMATGWIADIFVRDLLRDPNLRDASDVSHTVVAVASSSAKDRAEKFIADTGIPAPC  65
            +R GI+  G I     R L               +VA+   +++ RAE      G+    
Sbjct  1    IRVGIIGAGKIGSKHARALNASQPG-------AELVAILDPNSE-RAEAVAESFGVEV--  50

Query  66   AAYGSYEELVADANVDVVYVATPHSHHFQNVMLALEAGKNVLCEKAFTVNAAQAKILCET  125
              Y   EEL+ D  +D V VATP+  H+   + ALEAGK+VLCEK       +AK L E 
Sbjct  51   --YSDLEELLNDPEIDAVIVATPNGLHYDLAIAALEAGKHVLCEKPLATTVEEAKELVEL  108

Query  126  AKKKNLFLMEA  136
            AKKK + +   
Sbjct  109  AKKKGVRVSVG  119



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00001316

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.138    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00001317

Length=290


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00007099

Length=290


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00001319

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin proteas...  143     3e-43
CDD:463772 pfam13012, MitMem_reg, Maintenance of mitochondrial st...  67.5    4e-15


>CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease.  Members 
of this family are found in proteasome regulatory subunits, 
eukaryotic initiation factor 3 (eIF3) subunits and regulators 
of transcription factors. This family is also known as 
the MPN domain and PAD-1-like domain, JABP1 domain or JAMM 
domain. These are metalloenzymes that function as the ubiquitin 
isopeptidase/ deubiquitinase in the ubiquitin-based signalling 
and protein turnover pathways in eukaryotes. Versions 
of the domain in prokaryotic cognates of the ubiquitin-modification 
pathway are shown to have a similar role, and the 
archael protein from Haloferax volcanii is found to cleave ubiquitin-like 
small archaeal modifier proteins (SAMP1/2) from 
protein conjugates.
Length=117

 Score = 143 bits (363),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 49/115 (43%), Positives = 73/115 (63%), Gaps = 5/115 (4%)

Query  14   RTVTVAPLVLLSVADHYGRSAKGTRKRVVGVLLGENLG-QTVRVSNSFAVPFEEDEKDPS  72
            RTV + PLVLL + DH  R  K   + V+GVLLG+  G  T+ ++NSFA+P EE E D +
Sbjct  4    RTVIIHPLVLLKILDHANRGGKIG-EEVMGVLLGKLEGDGTIEITNSFALPQEETEDDVN  62

Query  73   VWFLDHNFVESMRDMFKKINAREKLVGWYHSGPK---LRASDLEINELFKRYTPN  124
               LD  ++E+M +M KK+N +E++VGWYH+ P    L + D+  + L++R  P 
Sbjct  63   AVALDQEYMENMHEMLKKVNRKEEVVGWYHTHPGLCWLSSVDVHTHALYQRMIPE  117


>CDD:463772 pfam13012, MitMem_reg, Maintenance of mitochondrial structure 
and function.  This is C-terminal to the Mov24 region of the 
yeast proteasomal subunit Rpn11 and seems likely to regulate 
the mitochondrial fission and tubulation processes, ie the 
outer mitochondrial membrane proteins. This function appears 
to be unrelated to the proteasome activity of the N-terminal 
region.
Length=72

 Score = 67.5 bits (166),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 28/64 (44%), Positives = 38/64 (59%), Gaps = 6/64 (9%)

Query  180  HLLR-DIRDVAVGTLSTRITSQLQSLQGLHLRLRDIGQYLQKVLDHELPVNHAILGNLQD  238
            HL R DI+     +LS+ +  Q  SL+ L  RL  I +Y++ VLD ELP +HAI   LQD
Sbjct  9    HLARPDIK-----SLSSDLERQYYSLKMLQDRLDLILKYVEDVLDGELPPDHAIGRYLQD  63

Query  239  VFNL  242
            +  L
Sbjct  64   LLAL  67



Lambda      K        H        a         alpha
   0.313    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00001318

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.300    0.117    0.291    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00007101

Length=341


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00001320

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00001321

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00001322

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00001323

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459731 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domai...  58.3    2e-12


>CDD:459731 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain.  This 
family contains the DNA binding domains from Myb proteins, 
as well as the SANT domain family.
Length=46

 Score = 58.3 bits (142),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 29/44 (66%), Gaps = 1/44 (2%)

Query  94   KWSPEEDALIIELRGS-GMKWEDISKRLPGRSAISCRLHYQNYL  136
             W+PEED L++E     G +W+ I+K LPGR+   C+  +QNYL
Sbjct  3    PWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL  46



Lambda      K        H        a         alpha
   0.312    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00001324

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00007102

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00001325

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460154 pfam01302, CAP_GLY, CAP-Gly domain. Cytoskeleton-assoc...  102     1e-28
CDD:405277 pfam14560, Ubiquitin_2, Ubiquitin-like domain. This en...  77.2    6e-19


>CDD:460154 pfam01302, CAP_GLY, CAP-Gly domain.  Cytoskeleton-associated 
proteins (CAPs) are involved in the organisation of microtubules 
and transportation of vesicles and organelles along the 
cytoskeletal network. A conserved motif, CAP-Gly, has been 
identified in a number of CAPs, including CLIP-170 and dynactins. 
The crystal structure of Caenorhabditis elegans F53F4.3 
protein CAP-Gly domain was recently solved. The domain contains 
three beta-strands. The most conserved sequence, GKNDG, 
is located in two consecutive sharp turns on the surface, 
forming the entrance to a groove.
Length=65

 Score = 102 bits (256),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 43/75 (57%), Positives = 47/75 (63%), Gaps = 17/75 (23%)

Query  179  PHVRRGTIRYVGPVPTIPFPGVDVTSEETSDLGPQPIWVGIELDEPTGKNDGSVGGRRYF  238
            P  RRGT+RYVGPVP    PG               +WVG+ELDEP GKNDGSV G RYF
Sbjct  8    PGGRRGTVRYVGPVP--FAPG---------------VWVGVELDEPVGKNDGSVKGVRYF  50

Query  239  TCPNKTGVFVKPEKV  253
             CP K GVFV+P KV
Sbjct  51   ECPPKHGVFVRPSKV  65


>CDD:405277 pfam14560, Ubiquitin_2, Ubiquitin-like domain.  This entry contains 
ubiquitin-like domains.
Length=83

 Score = 77.2 bits (191),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 28/88 (32%), Positives = 42/88 (48%), Gaps = 6/88 (7%)

Query  10  VSVIVTTPGTATGSEPRFLTERRVTPTWTVLQLKSKLETMTGIPTNCQRLLLKAPGRADQ  69
           V + +T   T         +ERR   + T+ +LK KLE +TG P +  RL L        
Sbjct  1   VKLFITHSLT-----KAVSSERRFDKSLTIEELKEKLELITGTPPSSMRLQLYDDDDNLV  55

Query  70  CV-DGDDSIIGNWGLTKGCEIEVHDTRP  96
              D DD+++G++G+  G  I V D  P
Sbjct  56  AKLDDDDALLGSYGVRDGMRIHVIDLDP  83



Lambda      K        H        a         alpha
   0.315    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00007103

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460154 pfam01302, CAP_GLY, CAP-Gly domain. Cytoskeleton-assoc...  102     1e-28
CDD:405277 pfam14560, Ubiquitin_2, Ubiquitin-like domain. This en...  77.2    6e-19


>CDD:460154 pfam01302, CAP_GLY, CAP-Gly domain.  Cytoskeleton-associated 
proteins (CAPs) are involved in the organisation of microtubules 
and transportation of vesicles and organelles along the 
cytoskeletal network. A conserved motif, CAP-Gly, has been 
identified in a number of CAPs, including CLIP-170 and dynactins. 
The crystal structure of Caenorhabditis elegans F53F4.3 
protein CAP-Gly domain was recently solved. The domain contains 
three beta-strands. The most conserved sequence, GKNDG, 
is located in two consecutive sharp turns on the surface, 
forming the entrance to a groove.
Length=65

 Score = 102 bits (256),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 43/75 (57%), Positives = 47/75 (63%), Gaps = 17/75 (23%)

Query  179  PHVRRGTIRYVGPVPTIPFPGVDVTSEETSDLGPQPIWVGIELDEPTGKNDGSVGGRRYF  238
            P  RRGT+RYVGPVP    PG               +WVG+ELDEP GKNDGSV G RYF
Sbjct  8    PGGRRGTVRYVGPVP--FAPG---------------VWVGVELDEPVGKNDGSVKGVRYF  50

Query  239  TCPNKTGVFVKPEKV  253
             CP K GVFV+P KV
Sbjct  51   ECPPKHGVFVRPSKV  65


>CDD:405277 pfam14560, Ubiquitin_2, Ubiquitin-like domain.  This entry contains 
ubiquitin-like domains.
Length=83

 Score = 77.2 bits (191),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 28/88 (32%), Positives = 42/88 (48%), Gaps = 6/88 (7%)

Query  10  VSVIVTTPGTATGSEPRFLTERRVTPTWTVLQLKSKLETMTGIPTNCQRLLLKAPGRADQ  69
           V + +T   T         +ERR   + T+ +LK KLE +TG P +  RL L        
Sbjct  1   VKLFITHSLT-----KAVSSERRFDKSLTIEELKEKLELITGTPPSSMRLQLYDDDDNLV  55

Query  70  CV-DGDDSIIGNWGLTKGCEIEVHDTRP  96
              D DD+++G++G+  G  I V D  P
Sbjct  56  AKLDDDDALLGSYGVRDGMRIHVIDLDP  83



Lambda      K        H        a         alpha
   0.315    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00001326

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396082 pfam01351, RNase_HII, Ribonuclease HII                     164     5e-50


>CDD:396082 pfam01351, RNase_HII, Ribonuclease HII.  
Length=199

 Score = 164 bits (418),  Expect = 5e-50, Method: Composition-based stats.
 Identities = 71/232 (31%), Positives = 101/232 (44%), Gaps = 35/232 (15%)

Query  79   LGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTAGN  138
            +G+DEAGRGPV GP+V +A Y+P         R     DSK L+   R  L  L+     
Sbjct  1    IGIDEAGRGPVFGPLVVAAVYVPPERL--PELRKLGVKDSKKLSDQKREELAPLIKKR--  56

Query  139  PLHASCGWATKVLSARDISAGMMRPTSGA-YNLNAQAMDATVEIIRGIVEERRVDIREVY  197
                        +  R + AG ++  S    NLN       + +IR ++E+  V   E+ 
Sbjct  57   ------------IETRYLVAGNIKYMSENEINLNEIKAALHLAMIR-LLEKLGVKPDEIL  103

Query  198  IDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALEFCHEAVYG  257
            +D    P +  +KL  IF  +K+T   KAD  Y  V+AAS++AKV RD  LE   +    
Sbjct  104  VDGFRPPGSLPKKLRDIFG-IKVTAEHKADGKYLAVAAASIIAKVERDEMLE-LLK----  157

Query  258  LQRYEAPSMEVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNEC-RFSWGTA  308
                  P         GSGY SD    + L+    P   W  +  R S+ T 
Sbjct  158  ----RFPGY---GLDKGSGYGSDPHTRALLKLGGTP---WLPDFHRLSFKTV  199



Lambda      K        H        a         alpha
   0.317    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00001327

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396082 pfam01351, RNase_HII, Ribonuclease HII                     164     5e-50


>CDD:396082 pfam01351, RNase_HII, Ribonuclease HII.  
Length=199

 Score = 164 bits (418),  Expect = 5e-50, Method: Composition-based stats.
 Identities = 71/232 (31%), Positives = 101/232 (44%), Gaps = 35/232 (15%)

Query  79   LGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTAGN  138
            +G+DEAGRGPV GP+V +A Y+P         R     DSK L+   R  L  L+     
Sbjct  1    IGIDEAGRGPVFGPLVVAAVYVPPERL--PELRKLGVKDSKKLSDQKREELAPLIKKR--  56

Query  139  PLHASCGWATKVLSARDISAGMMRPTSGA-YNLNAQAMDATVEIIRGIVEERRVDIREVY  197
                        +  R + AG ++  S    NLN       + +IR ++E+  V   E+ 
Sbjct  57   ------------IETRYLVAGNIKYMSENEINLNEIKAALHLAMIR-LLEKLGVKPDEIL  103

Query  198  IDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALEFCHEAVYG  257
            +D    P +  +KL  IF  +K+T   KAD  Y  V+AAS++AKV RD  LE   +    
Sbjct  104  VDGFRPPGSLPKKLRDIFG-IKVTAEHKADGKYLAVAAASIIAKVERDEMLE-LLK----  157

Query  258  LQRYEAPSMEVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNEC-RFSWGTA  308
                  P         GSGY SD    + L+    P   W  +  R S+ T 
Sbjct  158  ----RFPGY---GLDKGSGYGSDPHTRALLKLGGTP---WLPDFHRLSFKTV  199



Lambda      K        H        a         alpha
   0.317    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00007105

Length=574


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 720314296


Query= TCONS_00007104

Length=574


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0765    0.140     1.90     42.6     43.6 

Effective search space used: 720314296


Query= TCONS_00001331

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00001329

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00001330

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00001332

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00001333

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00001334

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00007106

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00001335

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00001336

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00007107

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00001338

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00001337

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00007108

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00001339

Length=26


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.142    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82037150


Query= TCONS_00001340

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  170     3e-52


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 170 bits (434),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 85/295 (29%), Positives = 137/295 (46%), Gaps = 46/295 (16%)

Query  22   LGYGTGTAWFKKGGATGIDR-ELVESIKTAIKLGYHHLDGAEVYGT---EPEIGLAIKES  77
            +G GT       GG   I + E +E+++ A++ G + +D AEVYG    E  +G A+K+ 
Sbjct  1    IGLGTWQL---GGGWGPISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDY  57

Query  78   GVPREQLFVTTKVITNIADIP---------RAIDASLEKLQLSYVDLYLIHSPFFAKSDN  128
             V R+++ + TKV       P         ++++ SL++L   Y+DLY +H P     D 
Sbjct  58   PVKRDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWPDP---DT  114

Query  129  ELQEAWAAMEKVKAAGKARSIGVSNFLQSHLEAILKSAKVTPSINQIEYHPY--IQHGGL  186
             ++E W A+E++K  GK R+IGVSNF    +E  L   K+     Q+EY+     Q   L
Sbjct  115  PIEETWDALEELKKEGKIRAIGVSNFDAEQIEKALTKGKIPIVAVQVEYNLLRRRQEEEL  174

Query  187  VQFQGDKGIKTASYGPL---------TPITRAKDG--------------PLGEVLQTLAY  223
            +++    GI   +Y PL         T       G                 E L+ +A 
Sbjct  175  LEYCKKNGIPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGTPLNLEALEALEEIAK  234

Query  224  KYGVSEGEILLRW--SIDRGDVSITTSSKESRLSSYLRALRFRLTPKELDEISAI  276
            ++GVS  ++ LRW  S     + I  +S   +L   L AL F L+ +E+  I  +
Sbjct  235  EHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLSDEEVARIDEL  289



Lambda      K        H        a         alpha
   0.316    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00007109

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  83.9    1e-20


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 83.9 bits (208),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 46/167 (28%), Positives = 71/167 (43%), Gaps = 27/167 (16%)

Query  1    MEKVKAAGKARSIGVSNFLQSHLEAILKSAKVTPSINQIEYHPY--IQHGGLVQFQGDKG  58
            +E++K  GK R+IGVSNF    +E  L   K+     Q+EY+     Q   L+++    G
Sbjct  123  LEELKKEGKIRAIGVSNFDAEQIEKALTKGKIPIVAVQVEYNLLRRRQEEELLEYCKKNG  182

Query  59   IKTASYGPL---------TPITRAKDG--------------PLGEVLQTLAYKYGVSEGE  95
            I   +Y PL         T       G                 E L+ +A ++GVS  +
Sbjct  183  IPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGTPLNLEALEALEEIAKEHGVSPAQ  242

Query  96   ILLRW--SIDRGDVSITTSSKESRLSSYLRALRFRLTPKELDEISAI  140
            + LRW  S     + I  +S   +L   L AL F L+ +E+  I  +
Sbjct  243  VALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLSDEEVARIDEL  289



Lambda      K        H        a         alpha
   0.317    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00001341

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  170     3e-52


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 170 bits (434),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 85/295 (29%), Positives = 137/295 (46%), Gaps = 46/295 (16%)

Query  22   LGYGTGTAWFKKGGATGIDR-ELVESIKTAIKLGYHHLDGAEVYGT---EPEIGLAIKES  77
            +G GT       GG   I + E +E+++ A++ G + +D AEVYG    E  +G A+K+ 
Sbjct  1    IGLGTWQL---GGGWGPISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDY  57

Query  78   GVPREQLFVTTKVITNIADIP---------RAIDASLEKLQLSYVDLYLIHSPFFAKSDN  128
             V R+++ + TKV       P         ++++ SL++L   Y+DLY +H P     D 
Sbjct  58   PVKRDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWPDP---DT  114

Query  129  ELQEAWAAMEKVKAAGKARSIGVSNFLQSHLEAILKSAKVTPSINQIEYHPY--IQHGGL  186
             ++E W A+E++K  GK R+IGVSNF    +E  L   K+     Q+EY+     Q   L
Sbjct  115  PIEETWDALEELKKEGKIRAIGVSNFDAEQIEKALTKGKIPIVAVQVEYNLLRRRQEEEL  174

Query  187  VQFQGDKGIKTASYGPL---------TPITRAKDG--------------PLGEVLQTLAY  223
            +++    GI   +Y PL         T       G                 E L+ +A 
Sbjct  175  LEYCKKNGIPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGTPLNLEALEALEEIAK  234

Query  224  KYGVSEGEILLRW--SIDRGDVSITTSSKESRLSSYLRALRFRLTPKELDEISAI  276
            ++GVS  ++ LRW  S     + I  +S   +L   L AL F L+ +E+  I  +
Sbjct  235  EHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLSDEEVARIDEL  289



Lambda      K        H        a         alpha
   0.316    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00007110

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  83.9    1e-20


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 83.9 bits (208),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 46/167 (28%), Positives = 71/167 (43%), Gaps = 27/167 (16%)

Query  1    MEKVKAAGKARSIGVSNFLQSHLEAILKSAKVTPSINQIEYHPY--IQHGGLVQFQGDKG  58
            +E++K  GK R+IGVSNF    +E  L   K+     Q+EY+     Q   L+++    G
Sbjct  123  LEELKKEGKIRAIGVSNFDAEQIEKALTKGKIPIVAVQVEYNLLRRRQEEELLEYCKKNG  182

Query  59   IKTASYGPL---------TPITRAKDG--------------PLGEVLQTLAYKYGVSEGE  95
            I   +Y PL         T       G                 E L+ +A ++GVS  +
Sbjct  183  IPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGTPLNLEALEALEEIAKEHGVSPAQ  242

Query  96   ILLRW--SIDRGDVSITTSSKESRLSSYLRALRFRLTPKELDEISAI  140
            + LRW  S     + I  +S   +L   L AL F L+ +E+  I  +
Sbjct  243  VALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLSDEEVARIDEL  289



Lambda      K        H        a         alpha
   0.317    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00007111

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  83.9    1e-20


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 83.9 bits (208),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 46/167 (28%), Positives = 71/167 (43%), Gaps = 27/167 (16%)

Query  1    MEKVKAAGKARSIGVSNFLQSHLEAILKSAKVTPSINQIEYHPY--IQHGGLVQFQGDKG  58
            +E++K  GK R+IGVSNF    +E  L   K+     Q+EY+     Q   L+++    G
Sbjct  123  LEELKKEGKIRAIGVSNFDAEQIEKALTKGKIPIVAVQVEYNLLRRRQEEELLEYCKKNG  182

Query  59   IKTASYGPL---------TPITRAKDG--------------PLGEVLQTLAYKYGVSEGE  95
            I   +Y PL         T       G                 E L+ +A ++GVS  +
Sbjct  183  IPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGTPLNLEALEALEEIAKEHGVSPAQ  242

Query  96   ILLRW--SIDRGDVSITTSSKESRLSSYLRALRFRLTPKELDEISAI  140
            + LRW  S     + I  +S   +L   L AL F L+ +E+  I  +
Sbjct  243  VALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLSDEEVARIDEL  289



Lambda      K        H        a         alpha
   0.317    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00007112

Length=815


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1049164592


Query= TCONS_00001345

Length=714
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461337 pfam04515, Choline_transpo, Plasma-membrane choline tr...  72.2    3e-14


>CDD:461337 pfam04515, Choline_transpo, Plasma-membrane choline transporter. 
 This family represents a high-affinity plasma-membrane 
choline transporter in C.elegans which is thought to be rate-limiting 
for ACh synthesis in cholinergic nerve terminals.
Length=325

 Score = 72.2 bits (178),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 121/347 (35%), Gaps = 52/347 (15%)

Query  352  LLPFIVSSFWIYNVVRSRHAIAKAIDILEFACRILAANLELLLLGLGILICIVSWTWVWM  411
            ++  I++   +  ++  R  I  AI +L+ A + + +N  LLL+ L   + +++++  W+
Sbjct  1    IVFLIIAVILLLLLIFLRKRIPLAIALLKEASKAIKSNPSLLLVPLLTFLILLAFSAYWI  60

Query  412  LMFARVFLGGH-------------MSKSHAFALNISSWWLGTYFAFVYIWSLGVIAGIQR  458
            ++   ++L                      F  +    +L  Y  F  +W+   I  +Q+
Sbjct  61   VVAVALYLASSGGPPYKVNDGNSSGGGGVEFESDSKVIYLLLYHLFGLLWTSEFILAVQQ  120

Query  459  SVTAATVSQWYFHRLASPKPTSRQIVQAAFVHSVTTLFGTVCFSKLI------ALSTRLP  512
               A  V+ WYF +     P  +  V  +F  ++T   G++ F  LI             
Sbjct  121  MTIAGAVASWYFAKKDPGTP--KFPVLGSFKRALTYHLGSIAFGSLILAIVQILRLILEY  178

Query  513  LLLLPTRLSRLLNLFVYSLVPSPLAALTDPL------TLTYAAIHSQPLILSARGLLEMQ  566
            L     +    +   +   +   L  L   L           AI+ +    SA+      
Sbjct  179  LDRKLKKAENKIARCLLCCLQCCLWCLEKFLKYLNKNAYIMIAIYGKSFCTSAK------  232

Query  567  SVSLATAVSSLHMRSTSWSHAGSAPLLSYRLSKLFLHAARFMMSLTLGFGGWVSAARNLE  626
                      L  R+      G    ++  L    L   +  ++L  G   ++   R   
Sbjct  233  ------DAFELLKRN------GLRVAVNDCLGDFVLFLGKLFVALLTGLIAYL-YLRFTT  279

Query  627  VPGPGNGVHGSMYAYVVGLIAGIIGWSILGAAEGVIADIVDASFICW  673
             P   N         V  L+A +IG+ I      V    VD  F+C+
Sbjct  280  NPASLN------SPVVPLLVAFLIGYLIASIFMSVYESGVDTIFLCF  320



Lambda      K        H        a         alpha
   0.323    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 902194240


Query= TCONS_00001346

Length=815


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1049164592


Query= TCONS_00001344

Length=714
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461337 pfam04515, Choline_transpo, Plasma-membrane choline tr...  72.2    3e-14


>CDD:461337 pfam04515, Choline_transpo, Plasma-membrane choline transporter. 
 This family represents a high-affinity plasma-membrane 
choline transporter in C.elegans which is thought to be rate-limiting 
for ACh synthesis in cholinergic nerve terminals.
Length=325

 Score = 72.2 bits (178),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 121/347 (35%), Gaps = 52/347 (15%)

Query  352  LLPFIVSSFWIYNVVRSRHAIAKAIDILEFACRILAANLELLLLGLGILICIVSWTWVWM  411
            ++  I++   +  ++  R  I  AI +L+ A + + +N  LLL+ L   + +++++  W+
Sbjct  1    IVFLIIAVILLLLLIFLRKRIPLAIALLKEASKAIKSNPSLLLVPLLTFLILLAFSAYWI  60

Query  412  LMFARVFLGGH-------------MSKSHAFALNISSWWLGTYFAFVYIWSLGVIAGIQR  458
            ++   ++L                      F  +    +L  Y  F  +W+   I  +Q+
Sbjct  61   VVAVALYLASSGGPPYKVNDGNSSGGGGVEFESDSKVIYLLLYHLFGLLWTSEFILAVQQ  120

Query  459  SVTAATVSQWYFHRLASPKPTSRQIVQAAFVHSVTTLFGTVCFSKLI------ALSTRLP  512
               A  V+ WYF +     P  +  V  +F  ++T   G++ F  LI             
Sbjct  121  MTIAGAVASWYFAKKDPGTP--KFPVLGSFKRALTYHLGSIAFGSLILAIVQILRLILEY  178

Query  513  LLLLPTRLSRLLNLFVYSLVPSPLAALTDPL------TLTYAAIHSQPLILSARGLLEMQ  566
            L     +    +   +   +   L  L   L           AI+ +    SA+      
Sbjct  179  LDRKLKKAENKIARCLLCCLQCCLWCLEKFLKYLNKNAYIMIAIYGKSFCTSAK------  232

Query  567  SVSLATAVSSLHMRSTSWSHAGSAPLLSYRLSKLFLHAARFMMSLTLGFGGWVSAARNLE  626
                      L  R+      G    ++  L    L   +  ++L  G   ++   R   
Sbjct  233  ------DAFELLKRN------GLRVAVNDCLGDFVLFLGKLFVALLTGLIAYL-YLRFTT  279

Query  627  VPGPGNGVHGSMYAYVVGLIAGIIGWSILGAAEGVIADIVDASFICW  673
             P   N         V  L+A +IG+ I      V    VD  F+C+
Sbjct  280  NPASLN------SPVVPLLVAFLIGYLIASIFMSVYESGVDTIFLCF  320



Lambda      K        H        a         alpha
   0.323    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 902194240


Query= TCONS_00007113

Length=815


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1049164592


Query= TCONS_00001348

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397103 pfam02815, MIR, MIR domain. The MIR (protein mannosylt...  153     6e-47


>CDD:397103 pfam02815, MIR, MIR domain.  The MIR (protein mannosyltransferase, 
IP3R and RyR) domain is a domain that may have a ligand 
transferase function.
Length=185

 Score = 153 bits (388),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 78/178 (44%), Gaps = 21/178 (12%)

Query  59   LLHSHVQTYPDGSNQQQ------VTCYHHKDANND----WFIYPNRHEPEYDASGPLSFV  108
            L HSH   Y  GS QQQ      +T Y H DANN     W I   RH+      G    +
Sbjct  11   LFHSHQDEYLTGSEQQQKQPFLRITLYPHGDANNSARSLWRIEVVRHDA---WRG--GLI  65

Query  109  GDGDVIRLIHGQTGRNLHSHAIPAPIT----KSQYEVSCYGNITIGDEKDHWAVEVVDDV  164
              G   RL H  TGR LHSH    P        Q EVS YG      + D   +      
Sbjct  66   KWGSPFRLRHLTTGRYLHSHEEQKPPLVEKEDWQKEVSAYGFRGFPGDNDIVEIFEKKST  125

Query  165  ASRDRSRIRTLTTAFRLRHIVLGCYLRAGNVNLPQWGFK--QIETTCVKENNPRDVYT  220
                  RI+   + FRL+H+  GC+L + +V LP+WGF   Q + TC KE +  D  T
Sbjct  126  TGMGSDRIKPGDSYFRLQHVCTGCWLFSHSVKLPKWGFGPEQQKVTCAKEGHMDDALT  183



Lambda      K        H        a         alpha
   0.319    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00001349

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  165     6e-53
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  92.6    5e-25


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 165 bits (420),  Expect = 6e-53, Method: Composition-based stats.
 Identities = 49/124 (40%), Positives = 80/124 (65%), Gaps = 7/124 (6%)

Query  26   KKMKLSLWDTAGQETYKSITRSYFRGASGALLVFDITRPSTFTSCTQWLQDLRQIAEDGI  85
            K +KL +WDTAGQE ++++   Y+RGA G LLV+DIT   +F +  +W++++ + A++ +
Sbjct  46   KTVKLQIWDTAGQERFRALRPLYYRGADGFLLVYDITSRDSFENVKKWVEEILRHADENV  105

Query  86   VVILVGNKSDLAEVKSDVNQRRVTRQEAEEWCRMNNVVRYVETSAKSGEGVERAFLEVAE  145
             ++LVGNK DL +      QR V+ +E E   +    + ++ETSAK+ E VE AF E+A 
Sbjct  106  PIVLVGNKCDLED------QRVVSTEEGEALAKELG-LPFMETSAKTNENVEEAFEELAR  158

Query  146  RIYR  149
             I +
Sbjct  159  EILK  162


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 92.6 bits (231),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 36/74 (49%), Positives = 53/74 (72%), Gaps = 4/74 (5%)

Query  22   DRSQKKMKLSLWDTAGQETYKSITRSYFRGASGALLVFDITRPSTFTSCTQWLQDLRQIA  81
            D + KK+KL++WDTAGQE ++S+   Y+RGA+ ALLV+D     TF++   WL++L++ A
Sbjct  45   DDNGKKIKLNIWDTAGQERFRSLHPFYYRGAAAALLVYDSR---TFSNLKYWLRELKKYA  101

Query  82   EDGIVVILVGNKSD  95
             +   VILVGNK D
Sbjct  102  GN-SPVILVGNKID  114



Lambda      K        H        a         alpha
   0.315    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00001350

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  223     3e-75
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  136     4e-42


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 223 bits (570),  Expect = 3e-75, Method: Composition-based stats.
 Identities = 69/169 (41%), Positives = 108/169 (64%), Gaps = 7/169 (4%)

Query  10   KLVCIGDSGTGKSSLTIRLCEGRFSSSHDVTIGVEFGSRIVPVGPKKMKLSLWDTAGQET  69
            KLV +GD G GKSSL IR  + +F   +  TIGV+F ++ + V  K +KL +WDTAGQE 
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  70   YKSITRSYFRGASGALLVFDITRPSTFTSCTQWLQDLRQIAEDGIVVILVGNKSDLAEVK  129
            ++++   Y+RGA G LLV+DIT   +F +  +W++++ + A++ + ++LVGNK DL +  
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVKKWVEEILRHADENVPIVLVGNKCDLED--  118

Query  130  SDVNQRRVTRQEAEEWCRMNNVVRYVETSAKSGEGVERAFLEVAERIYR  178
                QR V+ +E E   +    + ++ETSAK+ E VE AF E+A  I +
Sbjct  119  ----QRVVSTEEGEALAKELG-LPFMETSAKTNENVEEAFEELAREILK  162


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 136 bits (346),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 53/118 (45%), Positives = 77/118 (65%), Gaps = 7/118 (6%)

Query  10   KLVCIGDSGTGKSSLTIRLCEGRFSSSHDVTIGVEFGSRIVPVGP---KKMKLSLWDTAG  66
            K+V +GDSG GK+SL  R  +  F   +  TIGV+F ++ V       KK+KL++WDTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  67   QETYKSITRSYFRGASGALLVFDITRPSTFTSCTQWLQDLRQIAEDGIVVILVGNKSD  124
            QE ++S+   Y+RGA+ ALLV+D     TF++   WL++L++ A +   VILVGNK D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDSR---TFSNLKYWLRELKKYAGN-SPVILVGNKID  114



Lambda      K        H        a         alpha
   0.317    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00001351

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397103 pfam02815, MIR, MIR domain. The MIR (protein mannosylt...  153     6e-47


>CDD:397103 pfam02815, MIR, MIR domain.  The MIR (protein mannosyltransferase, 
IP3R and RyR) domain is a domain that may have a ligand 
transferase function.
Length=185

 Score = 153 bits (388),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 78/178 (44%), Gaps = 21/178 (12%)

Query  59   LLHSHVQTYPDGSNQQQ------VTCYHHKDANND----WFIYPNRHEPEYDASGPLSFV  108
            L HSH   Y  GS QQQ      +T Y H DANN     W I   RH+      G    +
Sbjct  11   LFHSHQDEYLTGSEQQQKQPFLRITLYPHGDANNSARSLWRIEVVRHDA---WRG--GLI  65

Query  109  GDGDVIRLIHGQTGRNLHSHAIPAPIT----KSQYEVSCYGNITIGDEKDHWAVEVVDDV  164
              G   RL H  TGR LHSH    P        Q EVS YG      + D   +      
Sbjct  66   KWGSPFRLRHLTTGRYLHSHEEQKPPLVEKEDWQKEVSAYGFRGFPGDNDIVEIFEKKST  125

Query  165  ASRDRSRIRTLTTAFRLRHIVLGCYLRAGNVNLPQWGFK--QIETTCVKENNPRDVYT  220
                  RI+   + FRL+H+  GC+L + +V LP+WGF   Q + TC KE +  D  T
Sbjct  126  TGMGSDRIKPGDSYFRLQHVCTGCWLFSHSVKLPKWGFGPEQQKVTCAKEGHMDDALT  183



Lambda      K        H        a         alpha
   0.319    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00007114

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00001352

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00001353

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00001355

Length=1019
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462545 pfam08644, SPT16, FACT complex subunit (SPT16/CDC68). ...  266     5e-84
CDD:464338 pfam14826, FACT-Spt16_Nlob, FACT complex subunit SPT16...  208     9e-63
CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  108     3e-27
CDD:462500 pfam08512, Rtt106, Histone chaperone Rttp106-like. Thi...  96.7    1e-24


>CDD:462545 pfam08644, SPT16, FACT complex subunit (SPT16/CDC68).  Proteins 
in this family are subunits the FACT complex. The FACT complex 
plays a role in transcription initiation and promotes 
binding of TATA-binding protein (TBP) to a TATA box in chromatin.
Length=151

 Score = 266 bits (682),  Expect = 5e-84, Method: Composition-based stats.
 Identities = 94/151 (62%), Positives = 117/151 (77%), Gaps = 0/151 (0%)

Query  541  IYVDQKASTVIVPIMGRPVPFHINTIKNASKSDEGEYAYLRINFLSPGQGVGRKDDQPFE  600
            IYVD+K  T+++PI GRPVPFHI+TIKN SKSDEG Y YLRINF +PG G G+KDD PFE
Sbjct  1    IYVDKKNETILLPIYGRPVPFHISTIKNVSKSDEGNYTYLRINFNTPGSGTGKKDDLPFE  60

Query  601  DLSAHFLRNLTLRSKDNERLAQVAQDITELRKNALRREQEKKEMEDVVEQDKLIEIRNRR  660
            D  A F++ LT RSKD++ L  V + I EL+K   +RE E+KE  D+VEQ+KLI  +NRR
Sbjct  61   DPDAIFIKELTFRSKDSKHLQDVFKQIKELKKRVKKREAERKERADLVEQEKLILSKNRR  120

Query  661  PVKLPDVYLRPPLDGKRVPGEVEIHQNGLRY  691
            P +LPDV++RP +DGKRVPG +E H NGLRY
Sbjct  121  PPRLPDVFIRPTIDGKRVPGTLEAHTNGLRY  151


>CDD:464338 pfam14826, FACT-Spt16_Nlob, FACT complex subunit SPT16 N-terminal 
lobe domain.  The FACT or facilitator of chromatin transcription 
complex binds to and alters the properties of nucleosomes. 
This family represents the N-terminal lobe of the NTD, 
or N-terminal domain, and acts as a protein-protein interaction 
domain presumably with partners outside of the FACT 
complex. Knockout of the whole NTD domain, 1-450 residues in 
UniProt:P32558, in yeast serves to tender the cells sensitive 
to DNA replication stress but is not lethal. The C-terminal 
half of NTD is structurally similar to aminopeptidases, and 
the most highly conserved surface residues line a cleft equivalent 
to the aminopeptidase substrate-binding site, family 
peptidase_M24, pfam00557.
Length=160

 Score = 208 bits (531),  Expect = 9e-63, Method: Composition-based stats.
 Identities = 77/165 (47%), Positives = 109/165 (66%), Gaps = 9/165 (5%)

Query  7    IDKTLFFNRLSSFYAAWRADKRSSHPTFGGVGSIVILMGKTDEASTFQKNNAMHFWLLGY  66
            IDK LF  RL   Y+AW   K +S   + G  +++I +GK+DE + +QK+ A+  WLLGY
Sbjct  1    IDKKLFHKRLKRLYSAW---KENSADLWSGADALLIAVGKSDEDNPYQKSTALQTWLLGY  57

Query  67   EFPATLLVFTLEAVYVVTTAKKAKHLEPLRGGK----IPVEILITTKDPEGKLRSFEKCI  122
            EFP TL++FT + +Y++T+AKKAK LEPL+ GK    +PVE+L+  KD +   ++FEK I
Sbjct  58   EFPDTLMLFTKDKIYILTSAKKAKFLEPLKEGKKEEGVPVELLVRNKDADENKKNFEKLI  117

Query  123  EVIRSAGNKVGVLPKDTTTGPFAEDWKRTFAMLSAEIEEVDISPA  167
            E I++AG KVGVL KD   G F ++WK+      A  EEVD+S  
Sbjct  118  EAIKAAGKKVGVLAKDKFEGKFVDEWKKALK--EAGKEEVDVSLG  160


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 108 bits (272),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 54/239 (23%), Positives = 98/239 (41%), Gaps = 36/239 (15%)

Query  183  IRNASRACSGLMSEYFVEEMSRLLDEEKQMTHKALSARVDAKIDDAKFFNKLGKLPAEFD  242
            +R A+R  +  + E  +  +         +T + L     A+++ A+      +      
Sbjct  3    MRKAARIAAAAL-EAALAAI------RPGVTEREL----AAELEAARLRRGGAR------  45

Query  243  AQQIDWAYGPVIQSGGKYDLRLTAVSDNSNLEPG-IIIAGFGIRYK-TYSSMIARTYLV-  299
                  A+ P++ SG    +    + ++  L+PG +++   G  Y   Y S I RT++V 
Sbjct  46   ----GPAFPPIVASGPNAAI-PHYIPNDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVVG  100

Query  300  DPSKSQETNYAFLLALHEAVMRDVRDGTIAKDLYNKAINLIRTKKPELESHFVKSVGAGI  359
             PS  Q   Y  +L   EA +  V+ G    D+   A  ++      L  +F   +G GI
Sbjct  101  KPSPEQRELYEAVLEAQEAAIAAVKPGVTGGDVDAAAREVLEEA--GLGEYFPHGLGHGI  158

Query  360  GIELRDPNMVLNGKNSRTLKSGMTLSITVGLTDVEDPELKGSKSSTYSMIITDTVRVGE  418
            G+E+ +   +  G + R L+ GM  +I  G+  +              + I DTV V E
Sbjct  159  GLEVHEGPYISRGGDDRVLEPGMVFTIEPGIYFIPGW---------GGVRIEDTVLVTE  208


>CDD:462500 pfam08512, Rtt106, Histone chaperone Rttp106-like.  This family 
includes Rttp106, a histone chaperone involved in heterochromatin-mediated 
silencing. This domain belongs to the Pleckstrin 
homology domain superfamily.
Length=84

 Score = 96.7 bits (242),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 30/84 (36%), Positives = 40/84 (48%), Gaps = 5/84 (6%)

Query  816  GVPNR---SNVLIQPTTDALVQLTEPPFLVITLNEIEIAHLERVQFGLKNFDLVFVFKDF  872
            GV          + P    L+   + P LVI L++IE    ERV F L+ FDLV V K  
Sbjct  2    GVKCSRKAKEGYLYPLEKCLLFGFKKPPLVIPLSDIESVSFERVSFTLRTFDLVIVLKK-  60

Query  873  HRAPVHINTIPVESLEGVKDWLDS  896
                   + I  E L+G+KD+L S
Sbjct  61   -DPEYEFSMIDQEELDGIKDFLKS  83



Lambda      K        H        a         alpha
   0.316    0.134    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1306853548


Query= TCONS_00001354

Length=866
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462545 pfam08644, SPT16, FACT complex subunit (SPT16/CDC68). ...  265     1e-84
CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  108     2e-27
CDD:462500 pfam08512, Rtt106, Histone chaperone Rttp106-like. Thi...  97.5    6e-25


>CDD:462545 pfam08644, SPT16, FACT complex subunit (SPT16/CDC68).  Proteins 
in this family are subunits the FACT complex. The FACT complex 
plays a role in transcription initiation and promotes 
binding of TATA-binding protein (TBP) to a TATA box in chromatin.
Length=151

 Score = 265 bits (679),  Expect = 1e-84, Method: Composition-based stats.
 Identities = 94/151 (62%), Positives = 117/151 (77%), Gaps = 0/151 (0%)

Query  388  IYVDQKASTVIVPIMGRPVPFHINTIKNASKSDEGEYAYLRINFLSPGQGVGRKDDQPFE  447
            IYVD+K  T+++PI GRPVPFHI+TIKN SKSDEG Y YLRINF +PG G G+KDD PFE
Sbjct  1    IYVDKKNETILLPIYGRPVPFHISTIKNVSKSDEGNYTYLRINFNTPGSGTGKKDDLPFE  60

Query  448  DLSAHFLRNLTLRSKDNERLAQVAQDITELRKNALRREQEKKEMEDVVEQDKLIEIRNRR  507
            D  A F++ LT RSKD++ L  V + I EL+K   +RE E+KE  D+VEQ+KLI  +NRR
Sbjct  61   DPDAIFIKELTFRSKDSKHLQDVFKQIKELKKRVKKREAERKERADLVEQEKLILSKNRR  120

Query  508  PVKLPDVYLRPPLDGKRVPGEVEIHQNGLRY  538
            P +LPDV++RP +DGKRVPG +E H NGLRY
Sbjct  121  PPRLPDVFIRPTIDGKRVPGTLEAHTNGLRY  151


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 108 bits (272),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 54/239 (23%), Positives = 98/239 (41%), Gaps = 36/239 (15%)

Query  30   IRNASRACSGLMSEYFVEEMSRLLDEEKQMTHKALSARVDAKIDDAKFFNKLGKLPAEFD  89
            +R A+R  +  + E  +  +         +T + L     A+++ A+      +      
Sbjct  3    MRKAARIAAAAL-EAALAAI------RPGVTEREL----AAELEAARLRRGGAR------  45

Query  90   AQQIDWAYGPVIQSGGKYDLRLTAVSDNSNLEPG-IIIAGFGIRYK-TYSSMIARTYLV-  146
                  A+ P++ SG    +    + ++  L+PG +++   G  Y   Y S I RT++V 
Sbjct  46   ----GPAFPPIVASGPNAAI-PHYIPNDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVVG  100

Query  147  DPSKSQETNYAFLLALHEAVMRDVRDGTIAKDLYNKAINLIRTKKPELESHFVKSVGAGI  206
             PS  Q   Y  +L   EA +  V+ G    D+   A  ++      L  +F   +G GI
Sbjct  101  KPSPEQRELYEAVLEAQEAAIAAVKPGVTGGDVDAAAREVLEEA--GLGEYFPHGLGHGI  158

Query  207  GIELRDPNMVLNGKNSRTLKSGMTLSITVGLTDVEDPELKGSKSSTYSMIITDTVRVGE  265
            G+E+ +   +  G + R L+ GM  +I  G+  +              + I DTV V E
Sbjct  159  GLEVHEGPYISRGGDDRVLEPGMVFTIEPGIYFIPGW---------GGVRIEDTVLVTE  208


>CDD:462500 pfam08512, Rtt106, Histone chaperone Rttp106-like.  This family 
includes Rttp106, a histone chaperone involved in heterochromatin-mediated 
silencing. This domain belongs to the Pleckstrin 
homology domain superfamily.
Length=84

 Score = 97.5 bits (244),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 30/84 (36%), Positives = 40/84 (48%), Gaps = 5/84 (6%)

Query  663  GVPNR---SNVLIQPTTDALVQLTEPPFLVITLNEIEIAHLERVQFGLKNFDLVFVFKDF  719
            GV          + P    L+   + P LVI L++IE    ERV F L+ FDLV V K  
Sbjct  2    GVKCSRKAKEGYLYPLEKCLLFGFKKPPLVIPLSDIESVSFERVSFTLRTFDLVIVLKK-  60

Query  720  HRAPVHINTIPVESLEGVKDWLDS  743
                   + I  E L+G+KD+L S
Sbjct  61   -DPEYEFSMIDQEELDGIKDFLKS  83



Lambda      K        H        a         alpha
   0.315    0.133    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1106781294


Query= TCONS_00007116

Length=681
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464338 pfam14826, FACT-Spt16_Nlob, FACT complex subunit SPT16...  208     2e-64
CDD:462545 pfam08644, SPT16, FACT complex subunit (SPT16/CDC68). ...  203     7e-63
CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  110     4e-28


>CDD:464338 pfam14826, FACT-Spt16_Nlob, FACT complex subunit SPT16 N-terminal 
lobe domain.  The FACT or facilitator of chromatin transcription 
complex binds to and alters the properties of nucleosomes. 
This family represents the N-terminal lobe of the NTD, 
or N-terminal domain, and acts as a protein-protein interaction 
domain presumably with partners outside of the FACT 
complex. Knockout of the whole NTD domain, 1-450 residues in 
UniProt:P32558, in yeast serves to tender the cells sensitive 
to DNA replication stress but is not lethal. The C-terminal 
half of NTD is structurally similar to aminopeptidases, and 
the most highly conserved surface residues line a cleft equivalent 
to the aminopeptidase substrate-binding site, family 
peptidase_M24, pfam00557.
Length=160

 Score = 208 bits (532),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 77/165 (47%), Positives = 109/165 (66%), Gaps = 9/165 (5%)

Query  7    IDKTLFFNRLSSFYAAWRADKRSSHPTFGGVGSIVILMGKTDEASTFQKNNAMHFWLLGY  66
            IDK LF  RL   Y+AW   K +S   + G  +++I +GK+DE + +QK+ A+  WLLGY
Sbjct  1    IDKKLFHKRLKRLYSAW---KENSADLWSGADALLIAVGKSDEDNPYQKSTALQTWLLGY  57

Query  67   EFPATLLVFTLEAVYVVTTAKKAKHLEPLRGGK----IPVEILITTKDPEGKLRSFEKCI  122
            EFP TL++FT + +Y++T+AKKAK LEPL+ GK    +PVE+L+  KD +   ++FEK I
Sbjct  58   EFPDTLMLFTKDKIYILTSAKKAKFLEPLKEGKKEEGVPVELLVRNKDADENKKNFEKLI  117

Query  123  EVIRSAGNKVGVLPKDTTTGPFAEDWKRTFAMLSAEIEEVDISPA  167
            E I++AG KVGVL KD   G F ++WK+      A  EEVD+S  
Sbjct  118  EAIKAAGKKVGVLAKDKFEGKFVDEWKKALK--EAGKEEVDVSLG  160


>CDD:462545 pfam08644, SPT16, FACT complex subunit (SPT16/CDC68).  Proteins 
in this family are subunits the FACT complex. The FACT complex 
plays a role in transcription initiation and promotes 
binding of TATA-binding protein (TBP) to a TATA box in chromatin.
Length=151

 Score = 203 bits (520),  Expect = 7e-63, Method: Composition-based stats.
 Identities = 76/136 (56%), Positives = 96/136 (71%), Gaps = 4/136 (3%)

Query  541  IYVDQKASTVIVPIMGRPVPFHINTIKNASKSDEGEYAYLRINFLSPGQGVGRKDDQPFE  600
            IYVD+K  T+++PI GRPVPFHI+TIKN SKSDEG Y YLRINF +PG G G+KDD PFE
Sbjct  1    IYVDKKNETILLPIYGRPVPFHISTIKNVSKSDEGNYTYLRINFNTPGSGTGKKDDLPFE  60

Query  601  DLSAHFLRNLTLRSKDNERLAQVAQDITELRKNALRREQEKKEMEDVVEQDKLIEIRSTS  660
            D  A F++ LT RSKD++ L  V + I EL+K   +RE E+KE  D+VEQ+KLI  ++  
Sbjct  61   DPDAIFIKELTFRSKDSKHLQDVFKQIKELKKRVKKREAERKERADLVEQEKLILSKN--  118

Query  661  LRRTILLPMLITHRPP  676
             RR   LP +   RP 
Sbjct  119  -RRPPRLPDVFI-RPT  132


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 110 bits (277),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 54/239 (23%), Positives = 98/239 (41%), Gaps = 36/239 (15%)

Query  183  IRNASRACSGLMSEYFVEEMSRLLDEEKQMTHKALSARVDAKIDDAKFFNKLGKLPAEFD  242
            +R A+R  +  + E  +  +         +T + L     A+++ A+      +      
Sbjct  3    MRKAARIAAAAL-EAALAAI------RPGVTEREL----AAELEAARLRRGGAR------  45

Query  243  AQQIDWAYGPVIQSGGKYDLRLTAVSDNSNLEPG-IIIAGFGIRYK-TYSSMIARTYLV-  299
                  A+ P++ SG    +    + ++  L+PG +++   G  Y   Y S I RT++V 
Sbjct  46   ----GPAFPPIVASGPNAAI-PHYIPNDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVVG  100

Query  300  DPSKSQETNYAFLLALHEAVMRDVRDGTIAKDLYNKAINLIRTKKPELESHFVKSVGAGI  359
             PS  Q   Y  +L   EA +  V+ G    D+   A  ++      L  +F   +G GI
Sbjct  101  KPSPEQRELYEAVLEAQEAAIAAVKPGVTGGDVDAAAREVLEEA--GLGEYFPHGLGHGI  158

Query  360  GIELRDPNMVLNGKNSRTLKSGMTLSITVGLTDVEDPELKGSKSSTYSMIITDTVRVGE  418
            G+E+ +   +  G + R L+ GM  +I  G+  +              + I DTV V E
Sbjct  159  GLEVHEGPYISRGGDDRVLEPGMVFTIEPGIYFIPGW---------GGVRIEDTVLVTE  208



Lambda      K        H        a         alpha
   0.316    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0941    0.140     1.90     42.6     43.6 

Effective search space used: 867176520


Query= TCONS_00001356

Length=892
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462545 pfam08644, SPT16, FACT complex subunit (SPT16/CDC68). ...  265     2e-84
CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  108     2e-27
CDD:462500 pfam08512, Rtt106, Histone chaperone Rttp106-like. Thi...  97.5    6e-25


>CDD:462545 pfam08644, SPT16, FACT complex subunit (SPT16/CDC68).  Proteins 
in this family are subunits the FACT complex. The FACT complex 
plays a role in transcription initiation and promotes 
binding of TATA-binding protein (TBP) to a TATA box in chromatin.
Length=151

 Score = 265 bits (680),  Expect = 2e-84, Method: Composition-based stats.
 Identities = 94/151 (62%), Positives = 117/151 (77%), Gaps = 0/151 (0%)

Query  414  IYVDQKASTVIVPIMGRPVPFHINTIKNASKSDEGEYAYLRINFLSPGQGVGRKDDQPFE  473
            IYVD+K  T+++PI GRPVPFHI+TIKN SKSDEG Y YLRINF +PG G G+KDD PFE
Sbjct  1    IYVDKKNETILLPIYGRPVPFHISTIKNVSKSDEGNYTYLRINFNTPGSGTGKKDDLPFE  60

Query  474  DLSAHFLRNLTLRSKDNERLAQVAQDITELRKNALRREQEKKEMEDVVEQDKLIEIRNRR  533
            D  A F++ LT RSKD++ L  V + I EL+K   +RE E+KE  D+VEQ+KLI  +NRR
Sbjct  61   DPDAIFIKELTFRSKDSKHLQDVFKQIKELKKRVKKREAERKERADLVEQEKLILSKNRR  120

Query  534  PVKLPDVYLRPPLDGKRVPGEVEIHQNGLRY  564
            P +LPDV++RP +DGKRVPG +E H NGLRY
Sbjct  121  PPRLPDVFIRPTIDGKRVPGTLEAHTNGLRY  151


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 108 bits (273),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 54/239 (23%), Positives = 98/239 (41%), Gaps = 36/239 (15%)

Query  56   IRNASRACSGLMSEYFVEEMSRLLDEEKQMTHKALSARVDAKIDDAKFFNKLGKLPAEFD  115
            +R A+R  +  + E  +  +         +T + L     A+++ A+      +      
Sbjct  3    MRKAARIAAAAL-EAALAAI------RPGVTEREL----AAELEAARLRRGGAR------  45

Query  116  AQQIDWAYGPVIQSGGKYDLRLTAVSDNSNLEPG-IIIAGFGIRYK-TYSSMIARTYLV-  172
                  A+ P++ SG    +    + ++  L+PG +++   G  Y   Y S I RT++V 
Sbjct  46   ----GPAFPPIVASGPNAAI-PHYIPNDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVVG  100

Query  173  DPSKSQETNYAFLLALHEAVMRDVRDGTIAKDLYNKAINLIRTKKPELESHFVKSVGAGI  232
             PS  Q   Y  +L   EA +  V+ G    D+   A  ++      L  +F   +G GI
Sbjct  101  KPSPEQRELYEAVLEAQEAAIAAVKPGVTGGDVDAAAREVLEEA--GLGEYFPHGLGHGI  158

Query  233  GIELRDPNMVLNGKNSRTLKSGMTLSITVGLTDVEDPELKGSKSSTYSMIITDTVRVGE  291
            G+E+ +   +  G + R L+ GM  +I  G+  +              + I DTV V E
Sbjct  159  GLEVHEGPYISRGGDDRVLEPGMVFTIEPGIYFIPGW---------GGVRIEDTVLVTE  208


>CDD:462500 pfam08512, Rtt106, Histone chaperone Rttp106-like.  This family 
includes Rttp106, a histone chaperone involved in heterochromatin-mediated 
silencing. This domain belongs to the Pleckstrin 
homology domain superfamily.
Length=84

 Score = 97.5 bits (244),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 30/84 (36%), Positives = 40/84 (48%), Gaps = 5/84 (6%)

Query  689  GVPNR---SNVLIQPTTDALVQLTEPPFLVITLNEIEIAHLERVQFGLKNFDLVFVFKDF  745
            GV          + P    L+   + P LVI L++IE    ERV F L+ FDLV V K  
Sbjct  2    GVKCSRKAKEGYLYPLEKCLLFGFKKPPLVIPLSDIESVSFERVSFTLRTFDLVIVLKK-  60

Query  746  HRAPVHINTIPVESLEGVKDWLDS  769
                   + I  E L+G+KD+L S
Sbjct  61   -DPEYEFSMIDQEELDGIKDFLKS  83



Lambda      K        H        a         alpha
   0.315    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1144104658


Query= TCONS_00001362

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459829 pfam00490, ALAD, Delta-aminolevulinic acid dehydratase     531     0.0  


>CDD:459829 pfam00490, ALAD, Delta-aminolevulinic acid dehydratase.  
Length=315

 Score = 531 bits (1372),  Expect = 0.0, Method: Composition-based stats.
 Identities = 163/321 (51%), Positives = 213/321 (66%), Gaps = 6/321 (2%)

Query  51   SQLHAGYSHPLTRSWQAERQLTKEMLIYPLFITDNPDEETPIPSLPNQHRRGLNRLVPFL  110
            ++      +P  R    E +L+   LIYPLF+ +  +E+ PIPS+P  +R  L+RLV  +
Sbjct  1    TRPRRLRRNPALRRLVRETRLSPSDLIYPLFVVEGENEKEPIPSMPGVYRLSLDRLVKEV  60

Query  111  RPLVQKGLRSVILFGVPLHPTAKDALGTAADDPSGPVIQAIRLLRSRFPNLYIVTDVCLC  170
               V  G+ +VILFG+P     KD  G+ A +P G V +AIR ++  FP+L ++TDVCLC
Sbjct  61   EEAVDLGIPAVILFGIPDE---KDETGSEAYNPDGIVQRAIRAIKEAFPDLVVITDVCLC  117

Query  171  EYTSHGHCGILREDGTLDNAQSVDRISDVALAYATAGAHCVAPSDMNDGRVRAIKLKLIE  230
            EYTSHGHCGIL + G +DN ++++ ++  A+++A AGA  VAPSDM DGRV AI+  L E
Sbjct  118  EYTSHGHCGIL-DGGEVDNDETLELLAKQAVSHAEAGADIVAPSDMMDGRVGAIREALDE  176

Query  231  AGLAHRVLLMSYSAKFSGCLYGPFRDAAGSCPSFGDRRCYQLPPGGRGLARRAIQRDVGE  290
            AG    V +MSYSAK++   YGPFRDAAGS PSFGDR+ YQ+ P  R  A R +  D+ E
Sbjct  177  AGF-TDVPIMSYSAKYASAFYGPFRDAAGSAPSFGDRKTYQMDPANRREALREVALDIEE  235

Query  291  GADIIMVKPASSYLDIIRDAKELAKDMPIAAYQVSGEYAMIHAAAKAGVFDLKSMVFEST  350
            GADI+MVKPA  YLDIIR  K+   D+P+AAYQVSGEYAMI AAA  G  D K +V ES 
Sbjct  236  GADIVMVKPALPYLDIIRRVKDRF-DLPVAAYQVSGEYAMIKAAAANGWIDEKRVVLESL  294

Query  351  EGILRAGAGIIVSYFVPEFLD  371
              I RAGA II++YF  E   
Sbjct  295  LSIKRAGADIIITYFAKEAAR  315



Lambda      K        H        a         alpha
   0.321    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00001363

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459829 pfam00490, ALAD, Delta-aminolevulinic acid dehydratase     531     0.0  


>CDD:459829 pfam00490, ALAD, Delta-aminolevulinic acid dehydratase.  
Length=315

 Score = 531 bits (1372),  Expect = 0.0, Method: Composition-based stats.
 Identities = 163/321 (51%), Positives = 213/321 (66%), Gaps = 6/321 (2%)

Query  51   SQLHAGYSHPLTRSWQAERQLTKEMLIYPLFITDNPDEETPIPSLPNQHRRGLNRLVPFL  110
            ++      +P  R    E +L+   LIYPLF+ +  +E+ PIPS+P  +R  L+RLV  +
Sbjct  1    TRPRRLRRNPALRRLVRETRLSPSDLIYPLFVVEGENEKEPIPSMPGVYRLSLDRLVKEV  60

Query  111  RPLVQKGLRSVILFGVPLHPTAKDALGTAADDPSGPVIQAIRLLRSRFPNLYIVTDVCLC  170
               V  G+ +VILFG+P     KD  G+ A +P G V +AIR ++  FP+L ++TDVCLC
Sbjct  61   EEAVDLGIPAVILFGIPDE---KDETGSEAYNPDGIVQRAIRAIKEAFPDLVVITDVCLC  117

Query  171  EYTSHGHCGILREDGTLDNAQSVDRISDVALAYATAGAHCVAPSDMNDGRVRAIKLKLIE  230
            EYTSHGHCGIL + G +DN ++++ ++  A+++A AGA  VAPSDM DGRV AI+  L E
Sbjct  118  EYTSHGHCGIL-DGGEVDNDETLELLAKQAVSHAEAGADIVAPSDMMDGRVGAIREALDE  176

Query  231  AGLAHRVLLMSYSAKFSGCLYGPFRDAAGSCPSFGDRRCYQLPPGGRGLARRAIQRDVGE  290
            AG    V +MSYSAK++   YGPFRDAAGS PSFGDR+ YQ+ P  R  A R +  D+ E
Sbjct  177  AGF-TDVPIMSYSAKYASAFYGPFRDAAGSAPSFGDRKTYQMDPANRREALREVALDIEE  235

Query  291  GADIIMVKPASSYLDIIRDAKELAKDMPIAAYQVSGEYAMIHAAAKAGVFDLKSMVFEST  350
            GADI+MVKPA  YLDIIR  K+   D+P+AAYQVSGEYAMI AAA  G  D K +V ES 
Sbjct  236  GADIVMVKPALPYLDIIRRVKDRF-DLPVAAYQVSGEYAMIKAAAANGWIDEKRVVLESL  294

Query  351  EGILRAGAGIIVSYFVPEFLD  371
              I RAGA II++YF  E   
Sbjct  295  LSIKRAGADIIITYFAKEAAR  315



Lambda      K        H        a         alpha
   0.321    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00001364

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459829 pfam00490, ALAD, Delta-aminolevulinic acid dehydratase     531     0.0  


>CDD:459829 pfam00490, ALAD, Delta-aminolevulinic acid dehydratase.  
Length=315

 Score = 531 bits (1372),  Expect = 0.0, Method: Composition-based stats.
 Identities = 163/321 (51%), Positives = 213/321 (66%), Gaps = 6/321 (2%)

Query  51   SQLHAGYSHPLTRSWQAERQLTKEMLIYPLFITDNPDEETPIPSLPNQHRRGLNRLVPFL  110
            ++      +P  R    E +L+   LIYPLF+ +  +E+ PIPS+P  +R  L+RLV  +
Sbjct  1    TRPRRLRRNPALRRLVRETRLSPSDLIYPLFVVEGENEKEPIPSMPGVYRLSLDRLVKEV  60

Query  111  RPLVQKGLRSVILFGVPLHPTAKDALGTAADDPSGPVIQAIRLLRSRFPNLYIVTDVCLC  170
               V  G+ +VILFG+P     KD  G+ A +P G V +AIR ++  FP+L ++TDVCLC
Sbjct  61   EEAVDLGIPAVILFGIPDE---KDETGSEAYNPDGIVQRAIRAIKEAFPDLVVITDVCLC  117

Query  171  EYTSHGHCGILREDGTLDNAQSVDRISDVALAYATAGAHCVAPSDMNDGRVRAIKLKLIE  230
            EYTSHGHCGIL + G +DN ++++ ++  A+++A AGA  VAPSDM DGRV AI+  L E
Sbjct  118  EYTSHGHCGIL-DGGEVDNDETLELLAKQAVSHAEAGADIVAPSDMMDGRVGAIREALDE  176

Query  231  AGLAHRVLLMSYSAKFSGCLYGPFRDAAGSCPSFGDRRCYQLPPGGRGLARRAIQRDVGE  290
            AG    V +MSYSAK++   YGPFRDAAGS PSFGDR+ YQ+ P  R  A R +  D+ E
Sbjct  177  AGF-TDVPIMSYSAKYASAFYGPFRDAAGSAPSFGDRKTYQMDPANRREALREVALDIEE  235

Query  291  GADIIMVKPASSYLDIIRDAKELAKDMPIAAYQVSGEYAMIHAAAKAGVFDLKSMVFEST  350
            GADI+MVKPA  YLDIIR  K+   D+P+AAYQVSGEYAMI AAA  G  D K +V ES 
Sbjct  236  GADIVMVKPALPYLDIIRRVKDRF-DLPVAAYQVSGEYAMIKAAAANGWIDEKRVVLESL  294

Query  351  EGILRAGAGIIVSYFVPEFLD  371
              I RAGA II++YF  E   
Sbjct  295  LSIKRAGADIIITYFAKEAAR  315



Lambda      K        H        a         alpha
   0.321    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00007119

Length=993
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430202 pfam08767, CRM1_C, CRM1 C terminal. CRM1 (also known a...  479     5e-163
CDD:462459 pfam08389, Xpo1, Exportin 1-like protein. The sequence...  168     7e-49 
CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2. Ch...  141     2e-40 
CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3. Ch...  121     1e-33 
CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance ...  72.5    1e-16 


>CDD:430202 pfam08767, CRM1_C, CRM1 C terminal.  CRM1 (also known as Exportin1) 
mediates the nuclear export of proteins bearing a leucine-rich 
nuclear export signal (NES). CRM1 forms a complex 
with the NES containing protein and the small GTPase Ran. This 
region forms an alpha helical structure formed by six helical 
hairpin motifs that are structurally similar to the HEAT 
repeat, but share little sequence similarity to the HEAT repeat.
Length=323

 Score = 479 bits (1236),  Expect = 5e-163, Method: Composition-based stats.
 Identities = 193/288 (67%), Positives = 247/288 (86%), Gaps = 1/288 (0%)

Query  706  QIGRIYHDMLNMYRASSQLINDAVAHDGNIATKTPKVRGLRTIKKEILKLIDTYVQKADD  765
            Q+GRIY DMLN+YRA S+LI+ AVA +G IATKTPKVRGLRT+KKEILKLI+TY+ KADD
Sbjct  1    QLGRIYLDMLNLYRAYSELISQAVAANGEIATKTPKVRGLRTVKKEILKLIETYISKADD  60

Query  766  LEMVNANMVPPLLEAVLVDYNRNVPDAREAEVLNVMTTIVHKLHSLMEDKVPLIMESVFE  825
            LE+V  N+VPPLL+AVLVDYNRNVPDAR+AEVL++MTTIV+KL +L+ D+VPLI+++VFE
Sbjct  61   LELVLNNLVPPLLDAVLVDYNRNVPDARDAEVLSLMTTIVNKLGNLITDEVPLILDAVFE  120

Query  826  CTLEMINKDFHEYPEHRVQFFKLLQAINLYCFPALLKLDATQFKFVIDSCMWASKHDNRE  885
            CTL+MINKDF EYPEHRV FFKLL+AINL+CFPALL L   QFK VIDS +WA KH NR+
Sbjct  121  CTLDMINKDFEEYPEHRVNFFKLLRAINLHCFPALLSLPPEQFKLVIDSIVWAFKHTNRD  180

Query  886  VENTGLTMCLELMNNMAETDTQTSSIFFRQFFIPILQDVFFVLTDSDHKAGFKSQAMLLS  945
            V +TGL + LEL+ N+ ETD++ ++ F++ +++ ILQ+VF+VLTD+DHK+GFK QA+LL+
Sbjct  181  VADTGLNILLELLKNVEETDSEFANQFYQNYYLSILQEVFYVLTDTDHKSGFKLQALLLA  240

Query  946  RMFYFIESGKVQEPIYSPEQAPLGTSNKDFLQEYVANLLQNAFKNLQE  993
            R+F  +E+G +  P+Y P+QAP GTSN+ FL EY+ANLLQNAF NL +
Sbjct  241  RLFRLVENGSITVPLYDPDQAP-GTSNQVFLSEYIANLLQNAFPNLTQ  287


>CDD:462459 pfam08389, Xpo1, Exportin 1-like protein.  The sequences featured 
in this family are similar to a region close to the N-terminus 
of yeast exportin 1 (Xpo1, Crm1). This region is found 
just C-terminal to an importin-beta N-terminal domain (pfam03810) 
in many members of this family. Exportin 1 is a nuclear 
export receptor that interacts with leucine-rich nuclear 
export signal (NES) sequences, and Ran-GTP, and is involved 
in translocation of proteins out of the nucleus.
Length=147

 Score = 168 bits (427),  Expect = 7e-49, Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 84/148 (57%), Gaps = 3/148 (2%)

Query  103  ERAFLNKLNLVLVSILKQEWPHNWPTFINEIISSCHTSLSICENNMAILRLLSEEVFDFS  162
             +   NKL L L  + KQE+P+NWPTF  ++IS   ++ + CE  + IL++L EE+FDFS
Sbjct  1    PKFIRNKLALALAELAKQEYPNNWPTFFPDLISLLSSNPTGCELFLRILKVLPEEIFDFS  60

Query  163  QDQMTSIKARNLKTSMTQEFSSIFQLCSEVL--NTANQPSLIKATLETLLRFLNWIPLGY  220
            +  +T  +   LK  +      I +L  ++L  +      L++A L+ L  +L+WIP+G 
Sbjct  61   RTSLTQDRNNRLKDLLRSNMEQILELLLQILEASQNANSELVEAVLKCLGSWLSWIPIGL  120

Query  221  IFETPIINTLLTRFLDVPDFRNVTLKCL  248
            I   P++N L    L+ PD R   ++CL
Sbjct  121  IVNNPLLNLLF-SLLNDPDLREAAVECL  147


>CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=68

 Score = 141 bits (357),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 46/68 (68%), Positives = 57/68 (84%), Gaps = 0/68 (0%)

Query  402  RKHKYEEVLSNLRTVMIEKMVRPEEVLIVENDEGEIVREFVKESDTIQLYKTIRECLVYL  461
            R+  Y  +LS LR V+IE+M +PEEVLIVEN+EGEIVREF+K++DTI LYK++RE LVYL
Sbjct  1    RRQLYSPILSQLRVVLIERMAKPEEVLIVENEEGEIVREFMKDTDTIALYKSMRETLVYL  60

Query  462  THLDVVDT  469
            THLD  DT
Sbjct  61   THLDPDDT  68


>CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=51

 Score = 121 bits (305),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 45/51 (88%), Positives = 46/51 (90%), Gaps = 0/51 (0%)

Query  482  DGSEWSWANCNTLCWAIGSISGAMNEETEKRFLVTVIKDLLGLTEMKRGKD  532
            DGSEWSW N NTLCWAIGSISGAM+EE EKRFLVTVIKDLL L EMKRGKD
Sbjct  1    DGSEWSWNNLNTLCWAIGSISGAMSEEDEKRFLVTVIKDLLNLCEMKRGKD  51


>CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance or exportin 
repeat.  Chromosome region maintenance 1 or exportin 1 
mediates the nuclear transport of proteins bearing a leucin-rich 
nuclear export signal (NES). It contains helical repeats 
that are structurally similar to HEAT repeats, but share little 
sequence similarity with them. N-terminal, C-terminal 
and central repeats show slightly different structural arrangements, 
with N- and C- termini repeats interacting with each 
other. This entry represents the central repeats of CRM1.
Length=37

 Score = 72.5 bits (179),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 30/37 (81%), Gaps = 0/37 (0%)

Query  327  DYLTHAHFYLIRISQIDDREVFKICLEYWTRLVQELY  363
            + L  A  YL++IS++DDRE+FKICLEYW +LV ELY
Sbjct  1    ELLLAALQYLVKISEVDDREIFKICLEYWNKLVSELY  37



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1270040772


Query= TCONS_00001365

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462459 pfam08389, Xpo1, Exportin 1-like protein. The sequence...  165     5e-49
CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2. Ch...  139     1e-40
CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3. Ch...  118     4e-33
CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance ...  71.0    2e-16


>CDD:462459 pfam08389, Xpo1, Exportin 1-like protein.  The sequences featured 
in this family are similar to a region close to the N-terminus 
of yeast exportin 1 (Xpo1, Crm1). This region is found 
just C-terminal to an importin-beta N-terminal domain (pfam03810) 
in many members of this family. Exportin 1 is a nuclear 
export receptor that interacts with leucine-rich nuclear 
export signal (NES) sequences, and Ran-GTP, and is involved 
in translocation of proteins out of the nucleus.
Length=147

 Score = 165 bits (420),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 84/148 (57%), Gaps = 3/148 (2%)

Query  103  ERAFLNKLNLVLVSILKQEWPHNWPTFINEIISSCHTSLSICENNMAILRLLSEEVFDFS  162
             +   NKL L L  + KQE+P+NWPTF  ++IS   ++ + CE  + IL++L EE+FDFS
Sbjct  1    PKFIRNKLALALAELAKQEYPNNWPTFFPDLISLLSSNPTGCELFLRILKVLPEEIFDFS  60

Query  163  QDQMTSIKARNLKTSMTQEFSSIFQLCSEVL--NTANQPSLIKATLETLLRFLNWIPLGY  220
            +  +T  +   LK  +      I +L  ++L  +      L++A L+ L  +L+WIP+G 
Sbjct  61   RTSLTQDRNNRLKDLLRSNMEQILELLLQILEASQNANSELVEAVLKCLGSWLSWIPIGL  120

Query  221  IFETPIINTLLTRFLDVPDFRNVTLKCL  248
            I   P++N L    L+ PD R   ++CL
Sbjct  121  IVNNPLLNLLF-SLLNDPDLREAAVECL  147


>CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=68

 Score = 139 bits (354),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 46/68 (68%), Positives = 57/68 (84%), Gaps = 0/68 (0%)

Query  402  RKHKYEEVLSNLRTVMIEKMVRPEEVLIVENDEGEIVREFVKESDTIQLYKTIRECLVYL  461
            R+  Y  +LS LR V+IE+M +PEEVLIVEN+EGEIVREF+K++DTI LYK++RE LVYL
Sbjct  1    RRQLYSPILSQLRVVLIERMAKPEEVLIVENEEGEIVREFMKDTDTIALYKSMRETLVYL  60

Query  462  THLDVVDT  469
            THLD  DT
Sbjct  61   THLDPDDT  68


>CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=51

 Score = 118 bits (299),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 45/51 (88%), Positives = 46/51 (90%), Gaps = 0/51 (0%)

Query  482  DGSEWSWANCNTLCWAIGSISGAMNEETEKRFLVTVIKDLLGLTEMKRGKD  532
            DGSEWSW N NTLCWAIGSISGAM+EE EKRFLVTVIKDLL L EMKRGKD
Sbjct  1    DGSEWSWNNLNTLCWAIGSISGAMSEEDEKRFLVTVIKDLLNLCEMKRGKD  51


>CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance or exportin 
repeat.  Chromosome region maintenance 1 or exportin 1 
mediates the nuclear transport of proteins bearing a leucin-rich 
nuclear export signal (NES). It contains helical repeats 
that are structurally similar to HEAT repeats, but share little 
sequence similarity with them. N-terminal, C-terminal 
and central repeats show slightly different structural arrangements, 
with N- and C- termini repeats interacting with each 
other. This entry represents the central repeats of CRM1.
Length=37

 Score = 71.0 bits (175),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 30/37 (81%), Gaps = 0/37 (0%)

Query  327  DYLTHAHFYLIRISQIDDREVFKICLEYWTRLVQELY  363
            + L  A  YL++IS++DDRE+FKICLEYW +LV ELY
Sbjct  1    ELLLAALQYLVKISEVDDREIFKICLEYWNKLVSELY  37



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 745719572


Query= TCONS_00001366

Length=707
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430202 pfam08767, CRM1_C, CRM1 C terminal. CRM1 (also known a...  546     0.0  
CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2. Ch...  141     1e-40
CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3. Ch...  122     2e-34


>CDD:430202 pfam08767, CRM1_C, CRM1 C terminal.  CRM1 (also known as Exportin1) 
mediates the nuclear export of proteins bearing a leucine-rich 
nuclear export signal (NES). CRM1 forms a complex 
with the NES containing protein and the small GTPase Ran. This 
region forms an alpha helical structure formed by six helical 
hairpin motifs that are structurally similar to the HEAT 
repeat, but share little sequence similarity to the HEAT repeat.
Length=323

 Score = 546 bits (1409),  Expect = 0.0, Method: Composition-based stats.
 Identities = 218/324 (67%), Positives = 275/324 (85%), Gaps = 1/324 (0%)

Query  341  QIGRIYHDMLNMYRASSQLINDAVAHDGNIATKTPKVRGLRTIKKEILKLIDTYVQKADD  400
            Q+GRIY DMLN+YRA S+LI+ AVA +G IATKTPKVRGLRT+KKEILKLI+TY+ KADD
Sbjct  1    QLGRIYLDMLNLYRAYSELISQAVAANGEIATKTPKVRGLRTVKKEILKLIETYISKADD  60

Query  401  LEMVNANMVPPLLEAVLVDYNRNVPDAREAEVLNVMTTIVHKLHSLMEDKVPLIMESVFE  460
            LE+V  N+VPPLL+AVLVDYNRNVPDAR+AEVL++MTTIV+KL +L+ D+VPLI+++VFE
Sbjct  61   LELVLNNLVPPLLDAVLVDYNRNVPDARDAEVLSLMTTIVNKLGNLITDEVPLILDAVFE  120

Query  461  CTLEMINKDFHEYPEHRVQFFKLLQAINLYCFPALLKLDATQFKFVIDSCMWASKHDNRE  520
            CTL+MINKDF EYPEHRV FFKLL+AINL+CFPALL L   QFK VIDS +WA KH NR+
Sbjct  121  CTLDMINKDFEEYPEHRVNFFKLLRAINLHCFPALLSLPPEQFKLVIDSIVWAFKHTNRD  180

Query  521  VENTGLTMCLELMNNMAETDTQTSSIFFRQFFIPILQDVFFVLTDSDHKAGFKSQAMLLS  580
            V +TGL + LEL+ N+ ETD++ ++ F++ +++ ILQ+VF+VLTD+DHK+GFK QA+LL+
Sbjct  181  VADTGLNILLELLKNVEETDSEFANQFYQNYYLSILQEVFYVLTDTDHKSGFKLQALLLA  240

Query  581  RMFYFIESGKVQEPIYSPEQAPLGTSNKDFLQEYVANLLQNAFKNLQEIQIKQFVVGLFT  640
            R+F  +E+G +  P+Y P+QAP GTSN+ FL EY+ANLLQNAF NL + QI+ FVVGLF 
Sbjct  241  RLFRLVENGSITVPLYDPDQAP-GTSNQVFLSEYIANLLQNAFPNLTQEQIEIFVVGLFN  299

Query  641  FNDDFNKFKTHLRDFLISLKEFAG  664
              +D NKFK+HLRDFLI LKEF G
Sbjct  300  LCNDLNKFKSHLRDFLIQLKEFGG  323


>CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=68

 Score = 141 bits (357),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 46/68 (68%), Positives = 57/68 (84%), Gaps = 0/68 (0%)

Query  37   RKHKYEEVLSNLRTVMIEKMVRPEEVLIVENDEGEIVREFVKESDTIQLYKTIRECLVYL  96
            R+  Y  +LS LR V+IE+M +PEEVLIVEN+EGEIVREF+K++DTI LYK++RE LVYL
Sbjct  1    RRQLYSPILSQLRVVLIERMAKPEEVLIVENEEGEIVREFMKDTDTIALYKSMRETLVYL  60

Query  97   THLDVVDT  104
            THLD  DT
Sbjct  61   THLDPDDT  68


>CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=51

 Score = 122 bits (309),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 45/51 (88%), Positives = 46/51 (90%), Gaps = 0/51 (0%)

Query  117  DGSEWSWANCNTLCWAIGSISGAMNEETEKRFLVTVIKDLLGLTEMKRGKD  167
            DGSEWSW N NTLCWAIGSISGAM+EE EKRFLVTVIKDLL L EMKRGKD
Sbjct  1    DGSEWSWNNLNTLCWAIGSISGAMSEEDEKRFLVTVIKDLLNLCEMKRGKD  51



Lambda      K        H        a         alpha
   0.321    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905521060


Query= TCONS_00007120

Length=1041
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430202 pfam08767, CRM1_C, CRM1 C terminal. CRM1 (also known a...  410     1e-135
CDD:462459 pfam08389, Xpo1, Exportin 1-like protein. The sequence...  168     5e-49 
CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2. Ch...  141     1e-40 
CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3. Ch...  120     2e-33 
CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance ...  72.9    8e-17 


>CDD:430202 pfam08767, CRM1_C, CRM1 C terminal.  CRM1 (also known as Exportin1) 
mediates the nuclear export of proteins bearing a leucine-rich 
nuclear export signal (NES). CRM1 forms a complex 
with the NES containing protein and the small GTPase Ran. This 
region forms an alpha helical structure formed by six helical 
hairpin motifs that are structurally similar to the HEAT 
repeat, but share little sequence similarity to the HEAT repeat.
Length=323

 Score = 410 bits (1055),  Expect = 1e-135, Method: Composition-based stats.
 Identities = 160/239 (67%), Positives = 206/239 (86%), Gaps = 1/239 (0%)

Query  706  QIGRIYHDMLNMYRASSQLINDAVAHDGNIATKTPKVRGLRTIKKEILKLIDTYVQKADD  765
            Q+GRIY DMLN+YRA S+LI+ AVA +G IATKTPKVRGLRT+KKEILKLI+TY+ KADD
Sbjct  1    QLGRIYLDMLNLYRAYSELISQAVAANGEIATKTPKVRGLRTVKKEILKLIETYISKADD  60

Query  766  LEMVNANMVPPLLEAVLVDYNRNVPDAREAEVLNVMTTIVHKLHSLMEDKVPLIMESVFE  825
            LE+V  N+VPPLL+AVLVDYNRNVPDAR+AEVL++MTTIV+KL +L+ D+VPLI+++VFE
Sbjct  61   LELVLNNLVPPLLDAVLVDYNRNVPDARDAEVLSLMTTIVNKLGNLITDEVPLILDAVFE  120

Query  826  CTLEMINKDFHEYPEHRVQFFKLLQAINLYCFPALLKLDATQFKFVIDSCMWASKHDNRE  885
            CTL+MINKDF EYPEHRV FFKLL+AINL+CFPALL L   QFK VIDS +WA KH NR+
Sbjct  121  CTLDMINKDFEEYPEHRVNFFKLLRAINLHCFPALLSLPPEQFKLVIDSIVWAFKHTNRD  180

Query  886  VENTGLTMCLELMNNMAETDTQTSSIFFRQFFIPILQDVFFVLTDSDHKAG-SYTSMVL  943
            V +TGL + LEL+ N+ ETD++ ++ F++ +++ ILQ+VF+VLTD+DHK+G    +++L
Sbjct  181  VADTGLNILLELLKNVEETDSEFANQFYQNYYLSILQEVFYVLTDTDHKSGFKLQALLL  239


>CDD:462459 pfam08389, Xpo1, Exportin 1-like protein.  The sequences featured 
in this family are similar to a region close to the N-terminus 
of yeast exportin 1 (Xpo1, Crm1). This region is found 
just C-terminal to an importin-beta N-terminal domain (pfam03810) 
in many members of this family. Exportin 1 is a nuclear 
export receptor that interacts with leucine-rich nuclear 
export signal (NES) sequences, and Ran-GTP, and is involved 
in translocation of proteins out of the nucleus.
Length=147

 Score = 168 bits (429),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 84/148 (57%), Gaps = 3/148 (2%)

Query  103  ERAFLNKLNLVLVSILKQEWPHNWPTFINEIISSCHTSLSICENNMAILRLLSEEVFDFS  162
             +   NKL L L  + KQE+P+NWPTF  ++IS   ++ + CE  + IL++L EE+FDFS
Sbjct  1    PKFIRNKLALALAELAKQEYPNNWPTFFPDLISLLSSNPTGCELFLRILKVLPEEIFDFS  60

Query  163  QDQMTSIKARNLKTSMTQEFSSIFQLCSEVL--NTANQPSLIKATLETLLRFLNWIPLGY  220
            +  +T  +   LK  +      I +L  ++L  +      L++A L+ L  +L+WIP+G 
Sbjct  61   RTSLTQDRNNRLKDLLRSNMEQILELLLQILEASQNANSELVEAVLKCLGSWLSWIPIGL  120

Query  221  IFETPIINTLLTRFLDVPDFRNVTLKCL  248
            I   P++N L    L+ PD R   ++CL
Sbjct  121  IVNNPLLNLLF-SLLNDPDLREAAVECL  147


>CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=68

 Score = 141 bits (359),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 46/68 (68%), Positives = 57/68 (84%), Gaps = 0/68 (0%)

Query  402  RKHKYEEVLSNLRTVMIEKMVRPEEVLIVENDEGEIVREFVKESDTIQLYKTIRECLVYL  461
            R+  Y  +LS LR V+IE+M +PEEVLIVEN+EGEIVREF+K++DTI LYK++RE LVYL
Sbjct  1    RRQLYSPILSQLRVVLIERMAKPEEVLIVENEEGEIVREFMKDTDTIALYKSMRETLVYL  60

Query  462  THLDVVDT  469
            THLD  DT
Sbjct  61   THLDPDDT  68


>CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=51

 Score = 120 bits (303),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 45/51 (88%), Positives = 46/51 (90%), Gaps = 0/51 (0%)

Query  482  DGSEWSWANCNTLCWAIGSISGAMNEETEKRFLVTVIKDLLGLTEMKRGKD  532
            DGSEWSW N NTLCWAIGSISGAM+EE EKRFLVTVIKDLL L EMKRGKD
Sbjct  1    DGSEWSWNNLNTLCWAIGSISGAMSEEDEKRFLVTVIKDLLNLCEMKRGKD  51


>CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance or exportin 
repeat.  Chromosome region maintenance 1 or exportin 1 
mediates the nuclear transport of proteins bearing a leucin-rich 
nuclear export signal (NES). It contains helical repeats 
that are structurally similar to HEAT repeats, but share little 
sequence similarity with them. N-terminal, C-terminal 
and central repeats show slightly different structural arrangements, 
with N- and C- termini repeats interacting with each 
other. This entry represents the central repeats of CRM1.
Length=37

 Score = 72.9 bits (180),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 30/37 (81%), Gaps = 0/37 (0%)

Query  327  DYLTHAHFYLIRISQIDDREVFKICLEYWTRLVQELY  363
            + L  A  YL++IS++DDRE+FKICLEYW +LV ELY
Sbjct  1    ELLLAALQYLVKISEVDDREIFKICLEYWNKLVSELY  37



Lambda      K        H        a         alpha
   0.321    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1338002820


Query= TCONS_00007122

Length=1072
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430202 pfam08767, CRM1_C, CRM1 C terminal. CRM1 (also known a...  540     0.0  
CDD:462459 pfam08389, Xpo1, Exportin 1-like protein. The sequence...  168     5e-49
CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2. Ch...  141     2e-40
CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3. Ch...  121     1e-33
CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance ...  72.5    1e-16


>CDD:430202 pfam08767, CRM1_C, CRM1 C terminal.  CRM1 (also known as Exportin1) 
mediates the nuclear export of proteins bearing a leucine-rich 
nuclear export signal (NES). CRM1 forms a complex 
with the NES containing protein and the small GTPase Ran. This 
region forms an alpha helical structure formed by six helical 
hairpin motifs that are structurally similar to the HEAT 
repeat, but share little sequence similarity to the HEAT repeat.
Length=323

 Score = 540 bits (1393),  Expect = 0.0, Method: Composition-based stats.
 Identities = 218/324 (67%), Positives = 275/324 (85%), Gaps = 1/324 (0%)

Query  706   QIGRIYHDMLNMYRASSQLINDAVAHDGNIATKTPKVRGLRTIKKEILKLIDTYVQKADD  765
             Q+GRIY DMLN+YRA S+LI+ AVA +G IATKTPKVRGLRT+KKEILKLI+TY+ KADD
Sbjct  1     QLGRIYLDMLNLYRAYSELISQAVAANGEIATKTPKVRGLRTVKKEILKLIETYISKADD  60

Query  766   LEMVNANMVPPLLEAVLVDYNRNVPDAREAEVLNVMTTIVHKLHSLMEDKVPLIMESVFE  825
             LE+V  N+VPPLL+AVLVDYNRNVPDAR+AEVL++MTTIV+KL +L+ D+VPLI+++VFE
Sbjct  61    LELVLNNLVPPLLDAVLVDYNRNVPDARDAEVLSLMTTIVNKLGNLITDEVPLILDAVFE  120

Query  826   CTLEMINKDFHEYPEHRVQFFKLLQAINLYCFPALLKLDATQFKFVIDSCMWASKHDNRE  885
             CTL+MINKDF EYPEHRV FFKLL+AINL+CFPALL L   QFK VIDS +WA KH NR+
Sbjct  121   CTLDMINKDFEEYPEHRVNFFKLLRAINLHCFPALLSLPPEQFKLVIDSIVWAFKHTNRD  180

Query  886   VENTGLTMCLELMNNMAETDTQTSSIFFRQFFIPILQDVFFVLTDSDHKAGFKSQAMLLS  945
             V +TGL + LEL+ N+ ETD++ ++ F++ +++ ILQ+VF+VLTD+DHK+GFK QA+LL+
Sbjct  181   VADTGLNILLELLKNVEETDSEFANQFYQNYYLSILQEVFYVLTDTDHKSGFKLQALLLA  240

Query  946   RMFYFIESGKVQEPIYSPEQAPLGTSNKDFLQEYVANLLQNAFKNLQEIQIKQFVVGLFT  1005
             R+F  +E+G +  P+Y P+QAP GTSN+ FL EY+ANLLQNAF NL + QI+ FVVGLF 
Sbjct  241   RLFRLVENGSITVPLYDPDQAP-GTSNQVFLSEYIANLLQNAFPNLTQEQIEIFVVGLFN  299

Query  1006  FNDDFNKFKTHLRDFLISLKEFAG  1029
               +D NKFK+HLRDFLI LKEF G
Sbjct  300   LCNDLNKFKSHLRDFLIQLKEFGG  323


>CDD:462459 pfam08389, Xpo1, Exportin 1-like protein.  The sequences featured 
in this family are similar to a region close to the N-terminus 
of yeast exportin 1 (Xpo1, Crm1). This region is found 
just C-terminal to an importin-beta N-terminal domain (pfam03810) 
in many members of this family. Exportin 1 is a nuclear 
export receptor that interacts with leucine-rich nuclear 
export signal (NES) sequences, and Ran-GTP, and is involved 
in translocation of proteins out of the nucleus.
Length=147

 Score = 168 bits (429),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 84/148 (57%), Gaps = 3/148 (2%)

Query  103  ERAFLNKLNLVLVSILKQEWPHNWPTFINEIISSCHTSLSICENNMAILRLLSEEVFDFS  162
             +   NKL L L  + KQE+P+NWPTF  ++IS   ++ + CE  + IL++L EE+FDFS
Sbjct  1    PKFIRNKLALALAELAKQEYPNNWPTFFPDLISLLSSNPTGCELFLRILKVLPEEIFDFS  60

Query  163  QDQMTSIKARNLKTSMTQEFSSIFQLCSEVL--NTANQPSLIKATLETLLRFLNWIPLGY  220
            +  +T  +   LK  +      I +L  ++L  +      L++A L+ L  +L+WIP+G 
Sbjct  61   RTSLTQDRNNRLKDLLRSNMEQILELLLQILEASQNANSELVEAVLKCLGSWLSWIPIGL  120

Query  221  IFETPIINTLLTRFLDVPDFRNVTLKCL  248
            I   P++N L    L+ PD R   ++CL
Sbjct  121  IVNNPLLNLLF-SLLNDPDLREAAVECL  147


>CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=68

 Score = 141 bits (357),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 46/68 (68%), Positives = 57/68 (84%), Gaps = 0/68 (0%)

Query  402  RKHKYEEVLSNLRTVMIEKMVRPEEVLIVENDEGEIVREFVKESDTIQLYKTIRECLVYL  461
            R+  Y  +LS LR V+IE+M +PEEVLIVEN+EGEIVREF+K++DTI LYK++RE LVYL
Sbjct  1    RRQLYSPILSQLRVVLIERMAKPEEVLIVENEEGEIVREFMKDTDTIALYKSMRETLVYL  60

Query  462  THLDVVDT  469
            THLD  DT
Sbjct  61   THLDPDDT  68


>CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=51

 Score = 121 bits (305),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 45/51 (88%), Positives = 46/51 (90%), Gaps = 0/51 (0%)

Query  482  DGSEWSWANCNTLCWAIGSISGAMNEETEKRFLVTVIKDLLGLTEMKRGKD  532
            DGSEWSW N NTLCWAIGSISGAM+EE EKRFLVTVIKDLL L EMKRGKD
Sbjct  1    DGSEWSWNNLNTLCWAIGSISGAMSEEDEKRFLVTVIKDLLNLCEMKRGKD  51


>CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance or exportin 
repeat.  Chromosome region maintenance 1 or exportin 1 
mediates the nuclear transport of proteins bearing a leucin-rich 
nuclear export signal (NES). It contains helical repeats 
that are structurally similar to HEAT repeats, but share little 
sequence similarity with them. N-terminal, C-terminal 
and central repeats show slightly different structural arrangements, 
with N- and C- termini repeats interacting with each 
other. This entry represents the central repeats of CRM1.
Length=37

 Score = 72.5 bits (179),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 30/37 (81%), Gaps = 0/37 (0%)

Query  327  DYLTHAHFYLIRISQIDDREVFKICLEYWTRLVQELY  363
            + L  A  YL++IS++DDRE+FKICLEYW +LV ELY
Sbjct  1    ELLLAALQYLVKISEVDDREIFKICLEYWNKLVSELY  37



Lambda      K        H        a         alpha
   0.321    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1381894976


Query= TCONS_00007121

Length=1101
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430202 pfam08767, CRM1_C, CRM1 C terminal. CRM1 (also known a...  540     0.0  
CDD:462459 pfam08389, Xpo1, Exportin 1-like protein. The sequence...  169     3e-49
CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2. Ch...  141     2e-40
CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3. Ch...  121     1e-33
CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance ...  72.5    1e-16


>CDD:430202 pfam08767, CRM1_C, CRM1 C terminal.  CRM1 (also known as Exportin1) 
mediates the nuclear export of proteins bearing a leucine-rich 
nuclear export signal (NES). CRM1 forms a complex 
with the NES containing protein and the small GTPase Ran. This 
region forms an alpha helical structure formed by six helical 
hairpin motifs that are structurally similar to the HEAT 
repeat, but share little sequence similarity to the HEAT repeat.
Length=323

 Score = 540 bits (1393),  Expect = 0.0, Method: Composition-based stats.
 Identities = 218/324 (67%), Positives = 275/324 (85%), Gaps = 1/324 (0%)

Query  735   QIGRIYHDMLNMYRASSQLINDAVAHDGNIATKTPKVRGLRTIKKEILKLIDTYVQKADD  794
             Q+GRIY DMLN+YRA S+LI+ AVA +G IATKTPKVRGLRT+KKEILKLI+TY+ KADD
Sbjct  1     QLGRIYLDMLNLYRAYSELISQAVAANGEIATKTPKVRGLRTVKKEILKLIETYISKADD  60

Query  795   LEMVNANMVPPLLEAVLVDYNRNVPDAREAEVLNVMTTIVHKLHSLMEDKVPLIMESVFE  854
             LE+V  N+VPPLL+AVLVDYNRNVPDAR+AEVL++MTTIV+KL +L+ D+VPLI+++VFE
Sbjct  61    LELVLNNLVPPLLDAVLVDYNRNVPDARDAEVLSLMTTIVNKLGNLITDEVPLILDAVFE  120

Query  855   CTLEMINKDFHEYPEHRVQFFKLLQAINLYCFPALLKLDATQFKFVIDSCMWASKHDNRE  914
             CTL+MINKDF EYPEHRV FFKLL+AINL+CFPALL L   QFK VIDS +WA KH NR+
Sbjct  121   CTLDMINKDFEEYPEHRVNFFKLLRAINLHCFPALLSLPPEQFKLVIDSIVWAFKHTNRD  180

Query  915   VENTGLTMCLELMNNMAETDTQTSSIFFRQFFIPILQDVFFVLTDSDHKAGFKSQAMLLS  974
             V +TGL + LEL+ N+ ETD++ ++ F++ +++ ILQ+VF+VLTD+DHK+GFK QA+LL+
Sbjct  181   VADTGLNILLELLKNVEETDSEFANQFYQNYYLSILQEVFYVLTDTDHKSGFKLQALLLA  240

Query  975   RMFYFIESGKVQEPIYSPEQAPLGTSNKDFLQEYVANLLQNAFKNLQEIQIKQFVVGLFT  1034
             R+F  +E+G +  P+Y P+QAP GTSN+ FL EY+ANLLQNAF NL + QI+ FVVGLF 
Sbjct  241   RLFRLVENGSITVPLYDPDQAP-GTSNQVFLSEYIANLLQNAFPNLTQEQIEIFVVGLFN  299

Query  1035  FNDDFNKFKTHLRDFLISLKEFAG  1058
               +D NKFK+HLRDFLI LKEF G
Sbjct  300   LCNDLNKFKSHLRDFLIQLKEFGG  323


>CDD:462459 pfam08389, Xpo1, Exportin 1-like protein.  The sequences featured 
in this family are similar to a region close to the N-terminus 
of yeast exportin 1 (Xpo1, Crm1). This region is found 
just C-terminal to an importin-beta N-terminal domain (pfam03810) 
in many members of this family. Exportin 1 is a nuclear 
export receptor that interacts with leucine-rich nuclear 
export signal (NES) sequences, and Ran-GTP, and is involved 
in translocation of proteins out of the nucleus.
Length=147

 Score = 169 bits (430),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 84/148 (57%), Gaps = 3/148 (2%)

Query  132  ERAFLNKLNLVLVSILKQEWPHNWPTFINEIISSCHTSLSICENNMAILRLLSEEVFDFS  191
             +   NKL L L  + KQE+P+NWPTF  ++IS   ++ + CE  + IL++L EE+FDFS
Sbjct  1    PKFIRNKLALALAELAKQEYPNNWPTFFPDLISLLSSNPTGCELFLRILKVLPEEIFDFS  60

Query  192  QDQMTSIKARNLKTSMTQEFSSIFQLCSEVL--NTANQPSLIKATLETLLRFLNWIPLGY  249
            +  +T  +   LK  +      I +L  ++L  +      L++A L+ L  +L+WIP+G 
Sbjct  61   RTSLTQDRNNRLKDLLRSNMEQILELLLQILEASQNANSELVEAVLKCLGSWLSWIPIGL  120

Query  250  IFETPIINTLLTRFLDVPDFRNVTLKCL  277
            I   P++N L    L+ PD R   ++CL
Sbjct  121  IVNNPLLNLLF-SLLNDPDLREAAVECL  147


>CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=68

 Score = 141 bits (358),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 46/68 (68%), Positives = 57/68 (84%), Gaps = 0/68 (0%)

Query  431  RKHKYEEVLSNLRTVMIEKMVRPEEVLIVENDEGEIVREFVKESDTIQLYKTIRECLVYL  490
            R+  Y  +LS LR V+IE+M +PEEVLIVEN+EGEIVREF+K++DTI LYK++RE LVYL
Sbjct  1    RRQLYSPILSQLRVVLIERMAKPEEVLIVENEEGEIVREFMKDTDTIALYKSMRETLVYL  60

Query  491  THLDVVDT  498
            THLD  DT
Sbjct  61   THLDPDDT  68


>CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=51

 Score = 121 bits (305),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 45/51 (88%), Positives = 46/51 (90%), Gaps = 0/51 (0%)

Query  511  DGSEWSWANCNTLCWAIGSISGAMNEETEKRFLVTVIKDLLGLTEMKRGKD  561
            DGSEWSW N NTLCWAIGSISGAM+EE EKRFLVTVIKDLL L EMKRGKD
Sbjct  1    DGSEWSWNNLNTLCWAIGSISGAMSEEDEKRFLVTVIKDLLNLCEMKRGKD  51


>CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance or exportin 
repeat.  Chromosome region maintenance 1 or exportin 1 
mediates the nuclear transport of proteins bearing a leucin-rich 
nuclear export signal (NES). It contains helical repeats 
that are structurally similar to HEAT repeats, but share little 
sequence similarity with them. N-terminal, C-terminal 
and central repeats show slightly different structural arrangements, 
with N- and C- termini repeats interacting with each 
other. This entry represents the central repeats of CRM1.
Length=37

 Score = 72.5 bits (179),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 30/37 (81%), Gaps = 0/37 (0%)

Query  356  DYLTHAHFYLIRISQIDDREVFKICLEYWTRLVQELY  392
            + L  A  YL++IS++DDRE+FKICLEYW +LV ELY
Sbjct  1    ELLLAALQYLVKISEVDDREIFKICLEYWNKLVSELY  37



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1401822952


Query= TCONS_00001367

Length=1072
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430202 pfam08767, CRM1_C, CRM1 C terminal. CRM1 (also known a...  540     0.0  
CDD:462459 pfam08389, Xpo1, Exportin 1-like protein. The sequence...  168     5e-49
CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2. Ch...  141     2e-40
CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3. Ch...  121     1e-33
CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance ...  72.5    1e-16


>CDD:430202 pfam08767, CRM1_C, CRM1 C terminal.  CRM1 (also known as Exportin1) 
mediates the nuclear export of proteins bearing a leucine-rich 
nuclear export signal (NES). CRM1 forms a complex 
with the NES containing protein and the small GTPase Ran. This 
region forms an alpha helical structure formed by six helical 
hairpin motifs that are structurally similar to the HEAT 
repeat, but share little sequence similarity to the HEAT repeat.
Length=323

 Score = 540 bits (1393),  Expect = 0.0, Method: Composition-based stats.
 Identities = 218/324 (67%), Positives = 275/324 (85%), Gaps = 1/324 (0%)

Query  706   QIGRIYHDMLNMYRASSQLINDAVAHDGNIATKTPKVRGLRTIKKEILKLIDTYVQKADD  765
             Q+GRIY DMLN+YRA S+LI+ AVA +G IATKTPKVRGLRT+KKEILKLI+TY+ KADD
Sbjct  1     QLGRIYLDMLNLYRAYSELISQAVAANGEIATKTPKVRGLRTVKKEILKLIETYISKADD  60

Query  766   LEMVNANMVPPLLEAVLVDYNRNVPDAREAEVLNVMTTIVHKLHSLMEDKVPLIMESVFE  825
             LE+V  N+VPPLL+AVLVDYNRNVPDAR+AEVL++MTTIV+KL +L+ D+VPLI+++VFE
Sbjct  61    LELVLNNLVPPLLDAVLVDYNRNVPDARDAEVLSLMTTIVNKLGNLITDEVPLILDAVFE  120

Query  826   CTLEMINKDFHEYPEHRVQFFKLLQAINLYCFPALLKLDATQFKFVIDSCMWASKHDNRE  885
             CTL+MINKDF EYPEHRV FFKLL+AINL+CFPALL L   QFK VIDS +WA KH NR+
Sbjct  121   CTLDMINKDFEEYPEHRVNFFKLLRAINLHCFPALLSLPPEQFKLVIDSIVWAFKHTNRD  180

Query  886   VENTGLTMCLELMNNMAETDTQTSSIFFRQFFIPILQDVFFVLTDSDHKAGFKSQAMLLS  945
             V +TGL + LEL+ N+ ETD++ ++ F++ +++ ILQ+VF+VLTD+DHK+GFK QA+LL+
Sbjct  181   VADTGLNILLELLKNVEETDSEFANQFYQNYYLSILQEVFYVLTDTDHKSGFKLQALLLA  240

Query  946   RMFYFIESGKVQEPIYSPEQAPLGTSNKDFLQEYVANLLQNAFKNLQEIQIKQFVVGLFT  1005
             R+F  +E+G +  P+Y P+QAP GTSN+ FL EY+ANLLQNAF NL + QI+ FVVGLF 
Sbjct  241   RLFRLVENGSITVPLYDPDQAP-GTSNQVFLSEYIANLLQNAFPNLTQEQIEIFVVGLFN  299

Query  1006  FNDDFNKFKTHLRDFLISLKEFAG  1029
               +D NKFK+HLRDFLI LKEF G
Sbjct  300   LCNDLNKFKSHLRDFLIQLKEFGG  323


>CDD:462459 pfam08389, Xpo1, Exportin 1-like protein.  The sequences featured 
in this family are similar to a region close to the N-terminus 
of yeast exportin 1 (Xpo1, Crm1). This region is found 
just C-terminal to an importin-beta N-terminal domain (pfam03810) 
in many members of this family. Exportin 1 is a nuclear 
export receptor that interacts with leucine-rich nuclear 
export signal (NES) sequences, and Ran-GTP, and is involved 
in translocation of proteins out of the nucleus.
Length=147

 Score = 168 bits (429),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 84/148 (57%), Gaps = 3/148 (2%)

Query  103  ERAFLNKLNLVLVSILKQEWPHNWPTFINEIISSCHTSLSICENNMAILRLLSEEVFDFS  162
             +   NKL L L  + KQE+P+NWPTF  ++IS   ++ + CE  + IL++L EE+FDFS
Sbjct  1    PKFIRNKLALALAELAKQEYPNNWPTFFPDLISLLSSNPTGCELFLRILKVLPEEIFDFS  60

Query  163  QDQMTSIKARNLKTSMTQEFSSIFQLCSEVL--NTANQPSLIKATLETLLRFLNWIPLGY  220
            +  +T  +   LK  +      I +L  ++L  +      L++A L+ L  +L+WIP+G 
Sbjct  61   RTSLTQDRNNRLKDLLRSNMEQILELLLQILEASQNANSELVEAVLKCLGSWLSWIPIGL  120

Query  221  IFETPIINTLLTRFLDVPDFRNVTLKCL  248
            I   P++N L    L+ PD R   ++CL
Sbjct  121  IVNNPLLNLLF-SLLNDPDLREAAVECL  147


>CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=68

 Score = 141 bits (357),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 46/68 (68%), Positives = 57/68 (84%), Gaps = 0/68 (0%)

Query  402  RKHKYEEVLSNLRTVMIEKMVRPEEVLIVENDEGEIVREFVKESDTIQLYKTIRECLVYL  461
            R+  Y  +LS LR V+IE+M +PEEVLIVEN+EGEIVREF+K++DTI LYK++RE LVYL
Sbjct  1    RRQLYSPILSQLRVVLIERMAKPEEVLIVENEEGEIVREFMKDTDTIALYKSMRETLVYL  60

Query  462  THLDVVDT  469
            THLD  DT
Sbjct  61   THLDPDDT  68


>CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=51

 Score = 121 bits (305),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 45/51 (88%), Positives = 46/51 (90%), Gaps = 0/51 (0%)

Query  482  DGSEWSWANCNTLCWAIGSISGAMNEETEKRFLVTVIKDLLGLTEMKRGKD  532
            DGSEWSW N NTLCWAIGSISGAM+EE EKRFLVTVIKDLL L EMKRGKD
Sbjct  1    DGSEWSWNNLNTLCWAIGSISGAMSEEDEKRFLVTVIKDLLNLCEMKRGKD  51


>CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance or exportin 
repeat.  Chromosome region maintenance 1 or exportin 1 
mediates the nuclear transport of proteins bearing a leucin-rich 
nuclear export signal (NES). It contains helical repeats 
that are structurally similar to HEAT repeats, but share little 
sequence similarity with them. N-terminal, C-terminal 
and central repeats show slightly different structural arrangements, 
with N- and C- termini repeats interacting with each 
other. This entry represents the central repeats of CRM1.
Length=37

 Score = 72.5 bits (179),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 30/37 (81%), Gaps = 0/37 (0%)

Query  327  DYLTHAHFYLIRISQIDDREVFKICLEYWTRLVQELY  363
            + L  A  YL++IS++DDRE+FKICLEYW +LV ELY
Sbjct  1    ELLLAALQYLVKISEVDDREIFKICLEYWNKLVSELY  37



Lambda      K        H        a         alpha
   0.321    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1381894976


Query= TCONS_00001368

Length=1101
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430202 pfam08767, CRM1_C, CRM1 C terminal. CRM1 (also known a...  540     0.0  
CDD:462459 pfam08389, Xpo1, Exportin 1-like protein. The sequence...  169     3e-49
CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2. Ch...  141     2e-40
CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3. Ch...  121     1e-33
CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance ...  72.5    1e-16


>CDD:430202 pfam08767, CRM1_C, CRM1 C terminal.  CRM1 (also known as Exportin1) 
mediates the nuclear export of proteins bearing a leucine-rich 
nuclear export signal (NES). CRM1 forms a complex 
with the NES containing protein and the small GTPase Ran. This 
region forms an alpha helical structure formed by six helical 
hairpin motifs that are structurally similar to the HEAT 
repeat, but share little sequence similarity to the HEAT repeat.
Length=323

 Score = 540 bits (1393),  Expect = 0.0, Method: Composition-based stats.
 Identities = 218/324 (67%), Positives = 275/324 (85%), Gaps = 1/324 (0%)

Query  735   QIGRIYHDMLNMYRASSQLINDAVAHDGNIATKTPKVRGLRTIKKEILKLIDTYVQKADD  794
             Q+GRIY DMLN+YRA S+LI+ AVA +G IATKTPKVRGLRT+KKEILKLI+TY+ KADD
Sbjct  1     QLGRIYLDMLNLYRAYSELISQAVAANGEIATKTPKVRGLRTVKKEILKLIETYISKADD  60

Query  795   LEMVNANMVPPLLEAVLVDYNRNVPDAREAEVLNVMTTIVHKLHSLMEDKVPLIMESVFE  854
             LE+V  N+VPPLL+AVLVDYNRNVPDAR+AEVL++MTTIV+KL +L+ D+VPLI+++VFE
Sbjct  61    LELVLNNLVPPLLDAVLVDYNRNVPDARDAEVLSLMTTIVNKLGNLITDEVPLILDAVFE  120

Query  855   CTLEMINKDFHEYPEHRVQFFKLLQAINLYCFPALLKLDATQFKFVIDSCMWASKHDNRE  914
             CTL+MINKDF EYPEHRV FFKLL+AINL+CFPALL L   QFK VIDS +WA KH NR+
Sbjct  121   CTLDMINKDFEEYPEHRVNFFKLLRAINLHCFPALLSLPPEQFKLVIDSIVWAFKHTNRD  180

Query  915   VENTGLTMCLELMNNMAETDTQTSSIFFRQFFIPILQDVFFVLTDSDHKAGFKSQAMLLS  974
             V +TGL + LEL+ N+ ETD++ ++ F++ +++ ILQ+VF+VLTD+DHK+GFK QA+LL+
Sbjct  181   VADTGLNILLELLKNVEETDSEFANQFYQNYYLSILQEVFYVLTDTDHKSGFKLQALLLA  240

Query  975   RMFYFIESGKVQEPIYSPEQAPLGTSNKDFLQEYVANLLQNAFKNLQEIQIKQFVVGLFT  1034
             R+F  +E+G +  P+Y P+QAP GTSN+ FL EY+ANLLQNAF NL + QI+ FVVGLF 
Sbjct  241   RLFRLVENGSITVPLYDPDQAP-GTSNQVFLSEYIANLLQNAFPNLTQEQIEIFVVGLFN  299

Query  1035  FNDDFNKFKTHLRDFLISLKEFAG  1058
               +D NKFK+HLRDFLI LKEF G
Sbjct  300   LCNDLNKFKSHLRDFLIQLKEFGG  323


>CDD:462459 pfam08389, Xpo1, Exportin 1-like protein.  The sequences featured 
in this family are similar to a region close to the N-terminus 
of yeast exportin 1 (Xpo1, Crm1). This region is found 
just C-terminal to an importin-beta N-terminal domain (pfam03810) 
in many members of this family. Exportin 1 is a nuclear 
export receptor that interacts with leucine-rich nuclear 
export signal (NES) sequences, and Ran-GTP, and is involved 
in translocation of proteins out of the nucleus.
Length=147

 Score = 169 bits (430),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 84/148 (57%), Gaps = 3/148 (2%)

Query  132  ERAFLNKLNLVLVSILKQEWPHNWPTFINEIISSCHTSLSICENNMAILRLLSEEVFDFS  191
             +   NKL L L  + KQE+P+NWPTF  ++IS   ++ + CE  + IL++L EE+FDFS
Sbjct  1    PKFIRNKLALALAELAKQEYPNNWPTFFPDLISLLSSNPTGCELFLRILKVLPEEIFDFS  60

Query  192  QDQMTSIKARNLKTSMTQEFSSIFQLCSEVL--NTANQPSLIKATLETLLRFLNWIPLGY  249
            +  +T  +   LK  +      I +L  ++L  +      L++A L+ L  +L+WIP+G 
Sbjct  61   RTSLTQDRNNRLKDLLRSNMEQILELLLQILEASQNANSELVEAVLKCLGSWLSWIPIGL  120

Query  250  IFETPIINTLLTRFLDVPDFRNVTLKCL  277
            I   P++N L    L+ PD R   ++CL
Sbjct  121  IVNNPLLNLLF-SLLNDPDLREAAVECL  147


>CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=68

 Score = 141 bits (358),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 46/68 (68%), Positives = 57/68 (84%), Gaps = 0/68 (0%)

Query  431  RKHKYEEVLSNLRTVMIEKMVRPEEVLIVENDEGEIVREFVKESDTIQLYKTIRECLVYL  490
            R+  Y  +LS LR V+IE+M +PEEVLIVEN+EGEIVREF+K++DTI LYK++RE LVYL
Sbjct  1    RRQLYSPILSQLRVVLIERMAKPEEVLIVENEEGEIVREFMKDTDTIALYKSMRETLVYL  60

Query  491  THLDVVDT  498
            THLD  DT
Sbjct  61   THLDPDDT  68


>CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=51

 Score = 121 bits (305),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 45/51 (88%), Positives = 46/51 (90%), Gaps = 0/51 (0%)

Query  511  DGSEWSWANCNTLCWAIGSISGAMNEETEKRFLVTVIKDLLGLTEMKRGKD  561
            DGSEWSW N NTLCWAIGSISGAM+EE EKRFLVTVIKDLL L EMKRGKD
Sbjct  1    DGSEWSWNNLNTLCWAIGSISGAMSEEDEKRFLVTVIKDLLNLCEMKRGKD  51


>CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance or exportin 
repeat.  Chromosome region maintenance 1 or exportin 1 
mediates the nuclear transport of proteins bearing a leucin-rich 
nuclear export signal (NES). It contains helical repeats 
that are structurally similar to HEAT repeats, but share little 
sequence similarity with them. N-terminal, C-terminal 
and central repeats show slightly different structural arrangements, 
with N- and C- termini repeats interacting with each 
other. This entry represents the central repeats of CRM1.
Length=37

 Score = 72.5 bits (179),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 30/37 (81%), Gaps = 0/37 (0%)

Query  356  DYLTHAHFYLIRISQIDDREVFKICLEYWTRLVQELY  392
            + L  A  YL++IS++DDRE+FKICLEYW +LV ELY
Sbjct  1    ELLLAALQYLVKISEVDDREIFKICLEYWNKLVSELY  37



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1401822952


Query= TCONS_00007123

Length=620
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462459 pfam08389, Xpo1, Exportin 1-like protein. The sequence...  166     4e-49
CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2. Ch...  140     1e-40
CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3. Ch...  118     4e-33
CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance ...  71.4    2e-16


>CDD:462459 pfam08389, Xpo1, Exportin 1-like protein.  The sequences featured 
in this family are similar to a region close to the N-terminus 
of yeast exportin 1 (Xpo1, Crm1). This region is found 
just C-terminal to an importin-beta N-terminal domain (pfam03810) 
in many members of this family. Exportin 1 is a nuclear 
export receptor that interacts with leucine-rich nuclear 
export signal (NES) sequences, and Ran-GTP, and is involved 
in translocation of proteins out of the nucleus.
Length=147

 Score = 166 bits (422),  Expect = 4e-49, Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 84/148 (57%), Gaps = 3/148 (2%)

Query  132  ERAFLNKLNLVLVSILKQEWPHNWPTFINEIISSCHTSLSICENNMAILRLLSEEVFDFS  191
             +   NKL L L  + KQE+P+NWPTF  ++IS   ++ + CE  + IL++L EE+FDFS
Sbjct  1    PKFIRNKLALALAELAKQEYPNNWPTFFPDLISLLSSNPTGCELFLRILKVLPEEIFDFS  60

Query  192  QDQMTSIKARNLKTSMTQEFSSIFQLCSEVL--NTANQPSLIKATLETLLRFLNWIPLGY  249
            +  +T  +   LK  +      I +L  ++L  +      L++A L+ L  +L+WIP+G 
Sbjct  61   RTSLTQDRNNRLKDLLRSNMEQILELLLQILEASQNANSELVEAVLKCLGSWLSWIPIGL  120

Query  250  IFETPIINTLLTRFLDVPDFRNVTLKCL  277
            I   P++N L    L+ PD R   ++CL
Sbjct  121  IVNNPLLNLLF-SLLNDPDLREAAVECL  147


>CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=68

 Score = 140 bits (355),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 46/68 (68%), Positives = 57/68 (84%), Gaps = 0/68 (0%)

Query  431  RKHKYEEVLSNLRTVMIEKMVRPEEVLIVENDEGEIVREFVKESDTIQLYKTIRECLVYL  490
            R+  Y  +LS LR V+IE+M +PEEVLIVEN+EGEIVREF+K++DTI LYK++RE LVYL
Sbjct  1    RRQLYSPILSQLRVVLIERMAKPEEVLIVENEEGEIVREFMKDTDTIALYKSMRETLVYL  60

Query  491  THLDVVDT  498
            THLD  DT
Sbjct  61   THLDPDDT  68


>CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=51

 Score = 118 bits (299),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 45/51 (88%), Positives = 46/51 (90%), Gaps = 0/51 (0%)

Query  511  DGSEWSWANCNTLCWAIGSISGAMNEETEKRFLVTVIKDLLGLTEMKRGKD  561
            DGSEWSW N NTLCWAIGSISGAM+EE EKRFLVTVIKDLL L EMKRGKD
Sbjct  1    DGSEWSWNNLNTLCWAIGSISGAMSEEDEKRFLVTVIKDLLNLCEMKRGKD  51


>CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance or exportin 
repeat.  Chromosome region maintenance 1 or exportin 1 
mediates the nuclear transport of proteins bearing a leucin-rich 
nuclear export signal (NES). It contains helical repeats 
that are structurally similar to HEAT repeats, but share little 
sequence similarity with them. N-terminal, C-terminal 
and central repeats show slightly different structural arrangements, 
with N- and C- termini repeats interacting with each 
other. This entry represents the central repeats of CRM1.
Length=37

 Score = 71.4 bits (176),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 30/37 (81%), Gaps = 0/37 (0%)

Query  356  DYLTHAHFYLIRISQIDDREVFKICLEYWTRLVQELY  392
            + L  A  YL++IS++DDRE+FKICLEYW +LV ELY
Sbjct  1    ELLLAALQYLVKISEVDDREIFKICLEYWNKLVSELY  37



Lambda      K        H        a         alpha
   0.321    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0686    0.140     1.90     42.6     43.6 

Effective search space used: 789057984


Query= TCONS_00007124

Length=734
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462459 pfam08389, Xpo1, Exportin 1-like protein. The sequence...  167     3e-49
CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2. Ch...  141     7e-41
CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3. Ch...  119     3e-33
CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance ...  72.1    1e-16


>CDD:462459 pfam08389, Xpo1, Exportin 1-like protein.  The sequences featured 
in this family are similar to a region close to the N-terminus 
of yeast exportin 1 (Xpo1, Crm1). This region is found 
just C-terminal to an importin-beta N-terminal domain (pfam03810) 
in many members of this family. Exportin 1 is a nuclear 
export receptor that interacts with leucine-rich nuclear 
export signal (NES) sequences, and Ran-GTP, and is involved 
in translocation of proteins out of the nucleus.
Length=147

 Score = 167 bits (426),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 84/148 (57%), Gaps = 3/148 (2%)

Query  103  ERAFLNKLNLVLVSILKQEWPHNWPTFINEIISSCHTSLSICENNMAILRLLSEEVFDFS  162
             +   NKL L L  + KQE+P+NWPTF  ++IS   ++ + CE  + IL++L EE+FDFS
Sbjct  1    PKFIRNKLALALAELAKQEYPNNWPTFFPDLISLLSSNPTGCELFLRILKVLPEEIFDFS  60

Query  163  QDQMTSIKARNLKTSMTQEFSSIFQLCSEVL--NTANQPSLIKATLETLLRFLNWIPLGY  220
            +  +T  +   LK  +      I +L  ++L  +      L++A L+ L  +L+WIP+G 
Sbjct  61   RTSLTQDRNNRLKDLLRSNMEQILELLLQILEASQNANSELVEAVLKCLGSWLSWIPIGL  120

Query  221  IFETPIINTLLTRFLDVPDFRNVTLKCL  248
            I   P++N L    L+ PD R   ++CL
Sbjct  121  IVNNPLLNLLF-SLLNDPDLREAAVECL  147


>CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=68

 Score = 141 bits (359),  Expect = 7e-41, Method: Composition-based stats.
 Identities = 46/68 (68%), Positives = 57/68 (84%), Gaps = 0/68 (0%)

Query  402  RKHKYEEVLSNLRTVMIEKMVRPEEVLIVENDEGEIVREFVKESDTIQLYKTIRECLVYL  461
            R+  Y  +LS LR V+IE+M +PEEVLIVEN+EGEIVREF+K++DTI LYK++RE LVYL
Sbjct  1    RRQLYSPILSQLRVVLIERMAKPEEVLIVENEEGEIVREFMKDTDTIALYKSMRETLVYL  60

Query  462  THLDVVDT  469
            THLD  DT
Sbjct  61   THLDPDDT  68


>CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=51

 Score = 119 bits (301),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 45/51 (88%), Positives = 46/51 (90%), Gaps = 0/51 (0%)

Query  482  DGSEWSWANCNTLCWAIGSISGAMNEETEKRFLVTVIKDLLGLTEMKRGKD  532
            DGSEWSW N NTLCWAIGSISGAM+EE EKRFLVTVIKDLL L EMKRGKD
Sbjct  1    DGSEWSWNNLNTLCWAIGSISGAMSEEDEKRFLVTVIKDLLNLCEMKRGKD  51


>CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance or exportin 
repeat.  Chromosome region maintenance 1 or exportin 1 
mediates the nuclear transport of proteins bearing a leucin-rich 
nuclear export signal (NES). It contains helical repeats 
that are structurally similar to HEAT repeats, but share little 
sequence similarity with them. N-terminal, C-terminal 
and central repeats show slightly different structural arrangements, 
with N- and C- termini repeats interacting with each 
other. This entry represents the central repeats of CRM1.
Length=37

 Score = 72.1 bits (178),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 30/37 (81%), Gaps = 0/37 (0%)

Query  327  DYLTHAHFYLIRISQIDDREVFKICLEYWTRLVQELY  363
            + L  A  YL++IS++DDRE+FKICLEYW +LV ELY
Sbjct  1    ELLLAALQYLVKISEVDDREIFKICLEYWNKLVSELY  37



Lambda      K        H        a         alpha
   0.321    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 931297280


Query= TCONS_00007125

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462459 pfam08389, Xpo1, Exportin 1-like protein. The sequence...  165     5e-49
CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2. Ch...  139     1e-40
CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3. Ch...  118     4e-33
CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance ...  71.0    2e-16


>CDD:462459 pfam08389, Xpo1, Exportin 1-like protein.  The sequences featured 
in this family are similar to a region close to the N-terminus 
of yeast exportin 1 (Xpo1, Crm1). This region is found 
just C-terminal to an importin-beta N-terminal domain (pfam03810) 
in many members of this family. Exportin 1 is a nuclear 
export receptor that interacts with leucine-rich nuclear 
export signal (NES) sequences, and Ran-GTP, and is involved 
in translocation of proteins out of the nucleus.
Length=147

 Score = 165 bits (420),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 84/148 (57%), Gaps = 3/148 (2%)

Query  103  ERAFLNKLNLVLVSILKQEWPHNWPTFINEIISSCHTSLSICENNMAILRLLSEEVFDFS  162
             +   NKL L L  + KQE+P+NWPTF  ++IS   ++ + CE  + IL++L EE+FDFS
Sbjct  1    PKFIRNKLALALAELAKQEYPNNWPTFFPDLISLLSSNPTGCELFLRILKVLPEEIFDFS  60

Query  163  QDQMTSIKARNLKTSMTQEFSSIFQLCSEVL--NTANQPSLIKATLETLLRFLNWIPLGY  220
            +  +T  +   LK  +      I +L  ++L  +      L++A L+ L  +L+WIP+G 
Sbjct  61   RTSLTQDRNNRLKDLLRSNMEQILELLLQILEASQNANSELVEAVLKCLGSWLSWIPIGL  120

Query  221  IFETPIINTLLTRFLDVPDFRNVTLKCL  248
            I   P++N L    L+ PD R   ++CL
Sbjct  121  IVNNPLLNLLF-SLLNDPDLREAAVECL  147


>CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=68

 Score = 139 bits (354),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 46/68 (68%), Positives = 57/68 (84%), Gaps = 0/68 (0%)

Query  402  RKHKYEEVLSNLRTVMIEKMVRPEEVLIVENDEGEIVREFVKESDTIQLYKTIRECLVYL  461
            R+  Y  +LS LR V+IE+M +PEEVLIVEN+EGEIVREF+K++DTI LYK++RE LVYL
Sbjct  1    RRQLYSPILSQLRVVLIERMAKPEEVLIVENEEGEIVREFMKDTDTIALYKSMRETLVYL  60

Query  462  THLDVVDT  469
            THLD  DT
Sbjct  61   THLDPDDT  68


>CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=51

 Score = 118 bits (299),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 45/51 (88%), Positives = 46/51 (90%), Gaps = 0/51 (0%)

Query  482  DGSEWSWANCNTLCWAIGSISGAMNEETEKRFLVTVIKDLLGLTEMKRGKD  532
            DGSEWSW N NTLCWAIGSISGAM+EE EKRFLVTVIKDLL L EMKRGKD
Sbjct  1    DGSEWSWNNLNTLCWAIGSISGAMSEEDEKRFLVTVIKDLLNLCEMKRGKD  51


>CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance or exportin 
repeat.  Chromosome region maintenance 1 or exportin 1 
mediates the nuclear transport of proteins bearing a leucin-rich 
nuclear export signal (NES). It contains helical repeats 
that are structurally similar to HEAT repeats, but share little 
sequence similarity with them. N-terminal, C-terminal 
and central repeats show slightly different structural arrangements, 
with N- and C- termini repeats interacting with each 
other. This entry represents the central repeats of CRM1.
Length=37

 Score = 71.0 bits (175),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 30/37 (81%), Gaps = 0/37 (0%)

Query  327  DYLTHAHFYLIRISQIDDREVFKICLEYWTRLVQELY  363
            + L  A  YL++IS++DDRE+FKICLEYW +LV ELY
Sbjct  1    ELLLAALQYLVKISEVDDREIFKICLEYWNKLVSELY  37



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 745719572


Query= TCONS_00001369

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462459 pfam08389, Xpo1, Exportin 1-like protein. The sequence...  165     5e-49
CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2. Ch...  139     1e-40
CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3. Ch...  118     4e-33
CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance ...  71.0    2e-16


>CDD:462459 pfam08389, Xpo1, Exportin 1-like protein.  The sequences featured 
in this family are similar to a region close to the N-terminus 
of yeast exportin 1 (Xpo1, Crm1). This region is found 
just C-terminal to an importin-beta N-terminal domain (pfam03810) 
in many members of this family. Exportin 1 is a nuclear 
export receptor that interacts with leucine-rich nuclear 
export signal (NES) sequences, and Ran-GTP, and is involved 
in translocation of proteins out of the nucleus.
Length=147

 Score = 165 bits (420),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 84/148 (57%), Gaps = 3/148 (2%)

Query  103  ERAFLNKLNLVLVSILKQEWPHNWPTFINEIISSCHTSLSICENNMAILRLLSEEVFDFS  162
             +   NKL L L  + KQE+P+NWPTF  ++IS   ++ + CE  + IL++L EE+FDFS
Sbjct  1    PKFIRNKLALALAELAKQEYPNNWPTFFPDLISLLSSNPTGCELFLRILKVLPEEIFDFS  60

Query  163  QDQMTSIKARNLKTSMTQEFSSIFQLCSEVL--NTANQPSLIKATLETLLRFLNWIPLGY  220
            +  +T  +   LK  +      I +L  ++L  +      L++A L+ L  +L+WIP+G 
Sbjct  61   RTSLTQDRNNRLKDLLRSNMEQILELLLQILEASQNANSELVEAVLKCLGSWLSWIPIGL  120

Query  221  IFETPIINTLLTRFLDVPDFRNVTLKCL  248
            I   P++N L    L+ PD R   ++CL
Sbjct  121  IVNNPLLNLLF-SLLNDPDLREAAVECL  147


>CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=68

 Score = 139 bits (354),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 46/68 (68%), Positives = 57/68 (84%), Gaps = 0/68 (0%)

Query  402  RKHKYEEVLSNLRTVMIEKMVRPEEVLIVENDEGEIVREFVKESDTIQLYKTIRECLVYL  461
            R+  Y  +LS LR V+IE+M +PEEVLIVEN+EGEIVREF+K++DTI LYK++RE LVYL
Sbjct  1    RRQLYSPILSQLRVVLIERMAKPEEVLIVENEEGEIVREFMKDTDTIALYKSMRETLVYL  60

Query  462  THLDVVDT  469
            THLD  DT
Sbjct  61   THLDPDDT  68


>CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=51

 Score = 118 bits (299),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 45/51 (88%), Positives = 46/51 (90%), Gaps = 0/51 (0%)

Query  482  DGSEWSWANCNTLCWAIGSISGAMNEETEKRFLVTVIKDLLGLTEMKRGKD  532
            DGSEWSW N NTLCWAIGSISGAM+EE EKRFLVTVIKDLL L EMKRGKD
Sbjct  1    DGSEWSWNNLNTLCWAIGSISGAMSEEDEKRFLVTVIKDLLNLCEMKRGKD  51


>CDD:465864 pfam18777, CRM1_repeat, Chromosome region maintenance or exportin 
repeat.  Chromosome region maintenance 1 or exportin 1 
mediates the nuclear transport of proteins bearing a leucin-rich 
nuclear export signal (NES). It contains helical repeats 
that are structurally similar to HEAT repeats, but share little 
sequence similarity with them. N-terminal, C-terminal 
and central repeats show slightly different structural arrangements, 
with N- and C- termini repeats interacting with each 
other. This entry represents the central repeats of CRM1.
Length=37

 Score = 71.0 bits (175),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 30/37 (81%), Gaps = 0/37 (0%)

Query  327  DYLTHAHFYLIRISQIDDREVFKICLEYWTRLVQELY  363
            + L  A  YL++IS++DDRE+FKICLEYW +LV ELY
Sbjct  1    ELLLAALQYLVKISEVDDREIFKICLEYWNKLVSELY  37



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 745719572


Query= TCONS_00007126

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2. Ch...  137     5e-43
CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3. Ch...  119     7e-36


>CDD:436735 pfam18784, CRM1_repeat_2, CRM1 / Exportin repeat 2.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=68

 Score = 137 bits (348),  Expect = 5e-43, Method: Composition-based stats.
 Identities = 46/68 (68%), Positives = 57/68 (84%), Gaps = 0/68 (0%)

Query  37   RKHKYEEVLSNLRTVMIEKMVRPEEVLIVENDEGEIVREFVKESDTIQLYKTIRECLVYL  96
            R+  Y  +LS LR V+IE+M +PEEVLIVEN+EGEIVREF+K++DTI LYK++RE LVYL
Sbjct  1    RRQLYSPILSQLRVVLIERMAKPEEVLIVENEEGEIVREFMKDTDTIALYKSMRETLVYL  60

Query  97   THLDVVDT  104
            THLD  DT
Sbjct  61   THLDPDDT  68


>CDD:436736 pfam18787, CRM1_repeat_3, CRM1 / Exportin repeat 3.  Chromosome 
region maintenance 1 / Exportin 1 mediates the nuclear transport 
of proteins bearing a leucin-rich nuclear export signal 
(NES). It contains helical repeats that are structurally 
similar to HEAT repeats, but share little sequence similarity 
with them. N-, C-terminal and central repeats show slightly 
different structural arrangements, with N- and C- terminal 
repeats interacting with each other. This Pfam entry includes 
some CRM1 repeats that fail to be detected with the pfam18777 
model.
Length=51

 Score = 119 bits (300),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 45/51 (88%), Positives = 46/51 (90%), Gaps = 0/51 (0%)

Query  117  DGSEWSWANCNTLCWAIGSISGAMNEETEKRFLVTVIKDLLGLTEMKRGKD  167
            DGSEWSW N NTLCWAIGSISGAM+EE EKRFLVTVIKDLL L EMKRGKD
Sbjct  1    DGSEWSWNNLNTLCWAIGSISGAMSEEDEKRFLVTVIKDLLNLCEMKRGKD  51



Lambda      K        H        a         alpha
   0.318    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00007127

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430202 pfam08767, CRM1_C, CRM1 C terminal. CRM1 (also known a...  540     0.0  


>CDD:430202 pfam08767, CRM1_C, CRM1 C terminal.  CRM1 (also known as Exportin1) 
mediates the nuclear export of proteins bearing a leucine-rich 
nuclear export signal (NES). CRM1 forms a complex 
with the NES containing protein and the small GTPase Ran. This 
region forms an alpha helical structure formed by six helical 
hairpin motifs that are structurally similar to the HEAT 
repeat, but share little sequence similarity to the HEAT repeat.
Length=323

 Score = 540 bits (1393),  Expect = 0.0, Method: Composition-based stats.
 Identities = 218/324 (67%), Positives = 275/324 (85%), Gaps = 1/324 (0%)

Query  127  QIGRIYHDMLNMYRASSQLINDAVAHDGNIATKTPKVRGLRTIKKEILKLIDTYVQKADD  186
            Q+GRIY DMLN+YRA S+LI+ AVA +G IATKTPKVRGLRT+KKEILKLI+TY+ KADD
Sbjct  1    QLGRIYLDMLNLYRAYSELISQAVAANGEIATKTPKVRGLRTVKKEILKLIETYISKADD  60

Query  187  LEMVNANMVPPLLEAVLVDYNRNVPDAREAEVLNVMTTIVHKLHSLMEDKVPLIMESVFE  246
            LE+V  N+VPPLL+AVLVDYNRNVPDAR+AEVL++MTTIV+KL +L+ D+VPLI+++VFE
Sbjct  61   LELVLNNLVPPLLDAVLVDYNRNVPDARDAEVLSLMTTIVNKLGNLITDEVPLILDAVFE  120

Query  247  CTLEMINKDFHEYPEHRVQFFKLLQAINLYCFPALLKLDATQFKFVIDSCMWASKHDNRE  306
            CTL+MINKDF EYPEHRV FFKLL+AINL+CFPALL L   QFK VIDS +WA KH NR+
Sbjct  121  CTLDMINKDFEEYPEHRVNFFKLLRAINLHCFPALLSLPPEQFKLVIDSIVWAFKHTNRD  180

Query  307  VENTGLTMCLELMNNMAETDTQTSSIFFRQFFIPILQDVFFVLTDSDHKAGFKSQAMLLS  366
            V +TGL + LEL+ N+ ETD++ ++ F++ +++ ILQ+VF+VLTD+DHK+GFK QA+LL+
Sbjct  181  VADTGLNILLELLKNVEETDSEFANQFYQNYYLSILQEVFYVLTDTDHKSGFKLQALLLA  240

Query  367  RMFYFIESGKVQEPIYSPEQAPLGTSNKDFLQEYVANLLQNAFKNLQEIQIKQFVVGLFT  426
            R+F  +E+G +  P+Y P+QAP GTSN+ FL EY+ANLLQNAF NL + QI+ FVVGLF 
Sbjct  241  RLFRLVENGSITVPLYDPDQAP-GTSNQVFLSEYIANLLQNAFPNLTQEQIEIFVVGLFN  299

Query  427  FNDDFNKFKTHLRDFLISLKEFAG  450
              +D NKFK+HLRDFLI LKEF G
Sbjct  300  LCNDLNKFKSHLRDFLIQLKEFGG  323



Lambda      K        H        a         alpha
   0.322    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00001371

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430202 pfam08767, CRM1_C, CRM1 C terminal. CRM1 (also known a...  426     5e-152


>CDD:430202 pfam08767, CRM1_C, CRM1 C terminal.  CRM1 (also known as Exportin1) 
mediates the nuclear export of proteins bearing a leucine-rich 
nuclear export signal (NES). CRM1 forms a complex 
with the NES containing protein and the small GTPase Ran. This 
region forms an alpha helical structure formed by six helical 
hairpin motifs that are structurally similar to the HEAT 
repeat, but share little sequence similarity to the HEAT repeat.
Length=323

 Score = 426 bits (1098),  Expect = 5e-152, Method: Composition-based stats.
 Identities = 170/262 (65%), Positives = 218/262 (83%), Gaps = 1/262 (0%)

Query  1    MVNANMVPPLLEAVLVDYNRNVPDAREAEVLNVMTTIVHKLHGLMEDKVPLIMESVFECT  60
            +V  N+VPPLL+AVLVDYNRNVPDAR+AEVL++MTTIV+KL  L+ D+VPLI+++VFECT
Sbjct  63   LVLNNLVPPLLDAVLVDYNRNVPDARDAEVLSLMTTIVNKLGNLITDEVPLILDAVFECT  122

Query  61   LEMINKDFHEYPEHRVQFFKLLQAINLYCFPALLKLDATQFKFVIDSCMWASKHDNREVE  120
            L+MINKDF EYPEHRV FFKLL+AINL+CFPALL L   QFK VIDS +WA KH NR+V 
Sbjct  123  LDMINKDFEEYPEHRVNFFKLLRAINLHCFPALLSLPPEQFKLVIDSIVWAFKHTNRDVA  182

Query  121  NTGLTMCLELMNNMAETDTQTSSIFFRQFFIPILQDVFFVLTDSDHKAGFKSQAMLLSRM  180
            +TGL + LEL+ N+ ETD++ ++ F++ +++ ILQ+VF+VLTD+DHK+GFK QA+LL+R+
Sbjct  183  DTGLNILLELLKNVEETDSEFANQFYQNYYLSILQEVFYVLTDTDHKSGFKLQALLLARL  242

Query  181  FYFIESGKVQEPIYSPEQAPLGTSNKDFLQEYVANLLQNAFKNLQEIQIKQFVVGLFTFN  240
            F  +E+G +  P+Y P+QAP GTSN+ FL EY+ANLLQNAF NL + QI+ FVVGLF   
Sbjct  243  FRLVENGSITVPLYDPDQAP-GTSNQVFLSEYIANLLQNAFPNLTQEQIEIFVVGLFNLC  301

Query  241  DDFNKFKTHLRDFLISLKEFAG  262
            +D NKFK+HLRDFLI LKEF G
Sbjct  302  NDLNKFKSHLRDFLIQLKEFGG  323



Lambda      K        H        a         alpha
   0.323    0.137    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00001374

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00001373

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00001375

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00007128

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00007129

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00007130

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00001378

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00001377

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00001376

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00001379

Length=182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429489 pfam07491, PPI_Ypi1, Protein phosphatase inhibitor. Th...  81.0    2e-21


>CDD:429489 pfam07491, PPI_Ypi1, Protein phosphatase inhibitor.  These proteins 
include Ypi1,, a novel Saccharomyces cerevisiae type 
1 protein phosphatase inhibitor and ppp1r11/hcgv, annotated 
as having protein phosphatase inhibitor activity.
Length=57

 Score = 81.0 bits (201),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 29/55 (53%), Positives = 33/55 (60%), Gaps = 8/55 (15%)

Query  37  TLRLRAENDSIATDHIEGARPGRHIRWTEDVVDNEGLGKKSSKVCCIYHKPRPVG  91
            LRLR           E  +  R +RW EDVVDNEG+ KK SK+CCIYHKPR  G
Sbjct  1   VLRLRGTQ--------ESPKSRRRVRWAEDVVDNEGMNKKKSKICCIYHKPREFG  47



Lambda      K        H        a         alpha
   0.305    0.121    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00001380

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00007131

Length=124
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430134 pfam08654, DASH_Dad2, DASH complex subunit Dad2. The D...  64.2    3e-15


>CDD:430134 pfam08654, DASH_Dad2, DASH complex subunit Dad2.  The DASH complex 
is a ~10 subunit microtubule-binding complex that is transferred 
to the kinetochore prior to mitosis. In Saccharomyces 
cerevisiae DASH forms both rings and spiral structures 
on microtubules in vitro.
Length=99

 Score = 64.2 bits (157),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 31/42 (74%), Gaps = 0/42 (0%)

Query  41  SRIVSKKAELENLMRLRDLSGAMAMQMQVLETKISTLRDGTE  82
           +RI  K+AELE L +LRDLS  +A Q++ L  K+STL DGTE
Sbjct  2   ARIAEKRAELEALKQLRDLSATLANQLEELSEKLSTLADGTE  43



Lambda      K        H        a         alpha
   0.311    0.120    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00001381

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00001382

Length=144
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430134 pfam08654, DASH_Dad2, DASH complex subunit Dad2. The D...  103     3e-30


>CDD:430134 pfam08654, DASH_Dad2, DASH complex subunit Dad2.  The DASH complex 
is a ~10 subunit microtubule-binding complex that is transferred 
to the kinetochore prior to mitosis. In Saccharomyces 
cerevisiae DASH forms both rings and spiral structures 
on microtubules in vitro.
Length=99

 Score = 103 bits (258),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 48/99 (48%), Positives = 62/99 (63%), Gaps = 4/99 (4%)

Query  41   SRIVSKKAELENLMRLRDLSGAMAMQMQVLETKISTLRD---AMACVLANWDNVLRAISM  97
            +RI  K+AELE L +LRDLS  +A Q++ L  K+STL D   A+A V+ANWD+VLRAISM
Sbjct  2    ARIAEKRAELEALKQLRDLSATLANQLEELSEKLSTLADGTEAVASVMANWDSVLRAISM  61

Query  98   ASTKAAVSISKKDQSSSVESGQNLIVEQRLPVTLVRIPA  136
            AS K     ++ + +   E       E  LP TLVRIP 
Sbjct  62   ASLKLL-QYAENNAADEEEDTSEEEEEDPLPETLVRIPV  99



Lambda      K        H        a         alpha
   0.310    0.118    0.298    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00001383

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  69.2    1e-14


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 69.2 bits (170),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 45/176 (26%), Positives = 79/176 (45%), Gaps = 8/176 (5%)

Query  18   GVRVASQEEDLFNEITHVEEEISKFRSTT-GNLQDYIPLLRLNPFSTNSRKAKEMRDRRD  76
            G R  S E+  F E+    +E+S   S+    L D  P+L+  P   + RK K  R +  
Sbjct  159  GERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKYFP-GPHGRKLKRARKKIK  217

Query  77   RYLNALNRDLDD--RMEKGIHKPCIQA---NVILDKEAKLNKEELISISLTMLSGGLDTI  131
              L+ L  +  +     K   +  + A       +  +KL  EEL +  L +   G DT 
Sbjct  218  DLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTT  277

Query  132  TTLVAWSFCLLSRRPDIQEKAAQAIQDMFSQDEPLCDAQDDQKCAYVAALVRECLR  187
            ++ ++W+   L++ P++QEK  + I ++           D Q   Y+ A+++E LR
Sbjct  278  SSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTY-DDLQNMPYLDAVIKETLR  332



Lambda      K        H        a         alpha
   0.320    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00007132

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430134 pfam08654, DASH_Dad2, DASH complex subunit Dad2. The D...  114     1e-34


>CDD:430134 pfam08654, DASH_Dad2, DASH complex subunit Dad2.  The DASH complex 
is a ~10 subunit microtubule-binding complex that is transferred 
to the kinetochore prior to mitosis. In Saccharomyces 
cerevisiae DASH forms both rings and spiral structures 
on microtubules in vitro.
Length=99

 Score = 114 bits (288),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 51/99 (52%), Positives = 65/99 (66%), Gaps = 1/99 (1%)

Query  41   SRIVSKKAELENLMRLRDLSGAMAMQMQVLETKISTLRDGTEAMACVLANWDNVLRAISM  100
            +RI  K+AELE L +LRDLS  +A Q++ L  K+STL DGTEA+A V+ANWD+VLRAISM
Sbjct  2    ARIAEKRAELEALKQLRDLSATLANQLEELSEKLSTLADGTEAVASVMANWDSVLRAISM  61

Query  101  ASTKAAVSISKKDQSSSVESGQNLIVEQRLPVTLVRIPA  139
            AS K     ++ + +   E       E  LP TLVRIP 
Sbjct  62   ASLKLL-QYAENNAADEEEDTSEEEEEDPLPETLVRIPV  99



Lambda      K        H        a         alpha
   0.309    0.118    0.299    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00007133

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430134 pfam08654, DASH_Dad2, DASH complex subunit Dad2. The D...  114     1e-34


>CDD:430134 pfam08654, DASH_Dad2, DASH complex subunit Dad2.  The DASH complex 
is a ~10 subunit microtubule-binding complex that is transferred 
to the kinetochore prior to mitosis. In Saccharomyces 
cerevisiae DASH forms both rings and spiral structures 
on microtubules in vitro.
Length=99

 Score = 114 bits (288),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 51/99 (52%), Positives = 65/99 (66%), Gaps = 1/99 (1%)

Query  41   SRIVSKKAELENLMRLRDLSGAMAMQMQVLETKISTLRDGTEAMACVLANWDNVLRAISM  100
            +RI  K+AELE L +LRDLS  +A Q++ L  K+STL DGTEA+A V+ANWD+VLRAISM
Sbjct  2    ARIAEKRAELEALKQLRDLSATLANQLEELSEKLSTLADGTEAVASVMANWDSVLRAISM  61

Query  101  ASTKAAVSISKKDQSSSVESGQNLIVEQRLPVTLVRIPA  139
            AS K     ++ + +   E       E  LP TLVRIP 
Sbjct  62   ASLKLL-QYAENNAADEEEDTSEEEEEDPLPETLVRIPV  99



Lambda      K        H        a         alpha
   0.309    0.118    0.299    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00007134

Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430134 pfam08654, DASH_Dad2, DASH complex subunit Dad2. The D...  97.7    8e-29


>CDD:430134 pfam08654, DASH_Dad2, DASH complex subunit Dad2.  The DASH complex 
is a ~10 subunit microtubule-binding complex that is transferred 
to the kinetochore prior to mitosis. In Saccharomyces 
cerevisiae DASH forms both rings and spiral structures 
on microtubules in vitro.
Length=99

 Score = 97.7 bits (244),  Expect = 8e-29, Method: Composition-based stats.
 Identities = 43/85 (51%), Positives = 55/85 (65%), Gaps = 1/85 (1%)

Query  2   RLRDLSGAMAMQMQVLETKISTLRDGTEAMACVLANWDNVLRAISMASTKAAVSISKKDQ  61
           +LRDLS  +A Q++ L  K+STL DGTEA+A V+ANWD+VLRAISMAS K     ++ + 
Sbjct  16  QLRDLSATLANQLEELSEKLSTLADGTEAVASVMANWDSVLRAISMASLKLL-QYAENNA  74

Query  62  SSSVESGQNLIVEQRLPVTLVRIPA  86
           +   E       E  LP TLVRIP 
Sbjct  75  ADEEEDTSEEEEEDPLPETLVRIPV  99



Lambda      K        H        a         alpha
   0.314    0.124    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00001384

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00001385

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00007135

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00001388

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00001386

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00001387

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00001389

Length=705
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465305 pfam16901, DAO_C, C-terminal domain of alpha-glyceroph...  203     4e-63
CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase. This fam...  161     2e-44


>CDD:465305 pfam16901, DAO_C, C-terminal domain of alpha-glycerophosphate 
oxidase.  DAO_C is the C-terminal region of alpha-glycerophosphate 
oxidase.
Length=126

 Score = 203 bits (520),  Expect = 4e-63, Method: Composition-based stats.
 Identities = 68/128 (53%), Positives = 86/128 (67%), Gaps = 2/128 (2%)

Query  501  CQTHQVRLIGAHGYSKTLFINLIQHFGLETDVAKHLTESYGDRAWQVAALSAPTDARFPL  560
            C T ++ L+GA GYS  L   L Q +GL+ +VA+HL   YG RA +V  L+       P 
Sbjct  1    CVTKKLPLLGADGYSANLAARLAQRYGLDEEVAEHLARRYGSRADEVLELALADGD--PE  58

Query  561  RGRRISALYPFIDGEVRYAVRHEYAQTAVDVIARRTRLAFLNAEAALEALPGIIDLMGAE  620
             G R+S  YP+I+ EV YAVRHE A T VDV+ARRTRLAFL+A+AALEALP + DLM  E
Sbjct  59   LGERLSPAYPYIEAEVVYAVRHEMALTLVDVLARRTRLAFLDADAALEALPEVADLMAEE  118

Query  621  LNWDDKRK  628
            L WD+ R+
Sbjct  119  LGWDEARR  126


>CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase.  This family includes 
various FAD dependent oxidoreductases: Glycerol-3-phosphate 
dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit 
EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate 
oxidase EC:1.4.3.1.
Length=339

 Score = 161 bits (408),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 84/380 (22%), Positives = 143/380 (38%), Gaps = 49/380 (13%)

Query  84   DLLVIGGGATGSGIALDAATRGLKVAVVERD-DFSAGTSSKSTKLVHGGVRYLEKAVWEL  142
            D++VIGGG  G   A + A RGL V ++ER  D  +G S ++  L+H G+RYLE      
Sbjct  1    DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSGASGRNAGLIHPGLRYLEP-----  55

Query  143  DYNQYKLVKEALRERKYFL-NTAPHLSSWLPIMVPVQKWWQAPYFWAGTKAYDWLAGSEG  201
                 +L  EAL   +                ++ + +  +        K         G
Sbjct  56   -SELARLALEALDLWEELEEELGIDCGFRRCGVLVLARDEEEEAL---EKLLA-ALRRLG  110

Query  202  IESSYFLTKSKAIDAFPMLRRDNLIGAMVYYDGAH-NDSRMNVSLAMTAALYGSTVVNHM  260
            + +   L   +  +  P+L    L G + Y DG H + +R+  +LA  A   G  ++   
Sbjct  111  VPAE-LLDAEELRELEPLL--PGLRGGLFYPDGGHVDPARLLRALARAAEALGVRIIEGT  167

Query  261  QVTGLTKDESGKLNGARVKDLIPGKNGQEAEEFTVRAKGIINATGPFTDSIRKMDEPDVK  320
            +VTG+ ++         V               T  A  ++NA G + D +     P ++
Sbjct  168  EVTGIEEEG----GVWGVVT-------------TGEADAVVNAAGAWADLLAL---PGLR  207

Query  321  EIVAPSAGVHVILPGYYSPSKMGLIDPSTSDGRVIFFLP-WQGNTIAGTTDQPTEITTQP  379
              V P  G  ++L        +  +  +   GR ++  P   G  + G TD+       P
Sbjct  208  LPVRPVRGQVLVLEPLPEALLILPVPITVDPGRGVYLRPRADGRLLLGGTDEEDG-FDDP  266

Query  380  EPSEKDINWILSEVRGYLAPDINVERSDVLAAWSGIRPLV-RDPKVKSSEALVRNHLISV  438
             P  ++I  +L   R       ++ER+     W+G+RPL    P +           ++ 
Sbjct  267  TPDPEEIEELLEAARRLFPALADIERA-----WAGLRPLPDGLPII--GRPGSPGLYLAT  319

Query  439  SPSG---LLTCAGGKWTTYR  455
               G    L    GK     
Sbjct  320  GHGGHGLTLAPGIGKLLAEL  339



Lambda      K        H        a         alpha
   0.315    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 902571480


Query= TCONS_00001390

Length=676
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465305 pfam16901, DAO_C, C-terminal domain of alpha-glyceroph...  202     1e-62
CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase. This fam...  158     1e-43


>CDD:465305 pfam16901, DAO_C, C-terminal domain of alpha-glycerophosphate 
oxidase.  DAO_C is the C-terminal region of alpha-glycerophosphate 
oxidase.
Length=126

 Score = 202 bits (516),  Expect = 1e-62, Method: Composition-based stats.
 Identities = 68/128 (53%), Positives = 86/128 (67%), Gaps = 2/128 (2%)

Query  501  CQTHQVRLIGAHGYSKTLFINLIQHFGLETDVAKHLTESYGDRAWQVAALSAPTDARFPL  560
            C T ++ L+GA GYS  L   L Q +GL+ +VA+HL   YG RA +V  L+       P 
Sbjct  1    CVTKKLPLLGADGYSANLAARLAQRYGLDEEVAEHLARRYGSRADEVLELALADGD--PE  58

Query  561  RGRRISALYPFIDGEVRYAVRHEYAQTAVDVIARRTRLAFLNAEAALEALPGIIDLMGAE  620
             G R+S  YP+I+ EV YAVRHE A T VDV+ARRTRLAFL+A+AALEALP + DLM  E
Sbjct  59   LGERLSPAYPYIEAEVVYAVRHEMALTLVDVLARRTRLAFLDADAALEALPEVADLMAEE  118

Query  621  LNWDDKRK  628
            L WD+ R+
Sbjct  119  LGWDEARR  126


>CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase.  This family includes 
various FAD dependent oxidoreductases: Glycerol-3-phosphate 
dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit 
EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate 
oxidase EC:1.4.3.1.
Length=339

 Score = 158 bits (402),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 84/380 (22%), Positives = 143/380 (38%), Gaps = 49/380 (13%)

Query  84   DLLVIGGGATGSGIALDAATRGLKVAVVERD-DFSAGTSSKSTKLVHGGVRYLEKAVWEL  142
            D++VIGGG  G   A + A RGL V ++ER  D  +G S ++  L+H G+RYLE      
Sbjct  1    DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSGASGRNAGLIHPGLRYLEP-----  55

Query  143  DYNQYKLVKEALRERKYFL-NTAPHLSSWLPIMVPVQKWWQAPYFWAGTKAYDWLAGSEG  201
                 +L  EAL   +                ++ + +  +        K         G
Sbjct  56   -SELARLALEALDLWEELEEELGIDCGFRRCGVLVLARDEEEEAL---EKLLA-ALRRLG  110

Query  202  IESSYFLTKSKAIDAFPMLRRDNLIGAMVYYDGAH-NDSRMNVSLAMTAALYGSTVVNHM  260
            + +   L   +  +  P+L    L G + Y DG H + +R+  +LA  A   G  ++   
Sbjct  111  VPAE-LLDAEELRELEPLL--PGLRGGLFYPDGGHVDPARLLRALARAAEALGVRIIEGT  167

Query  261  QVTGLTKDESGKLNGARVKDLIPGKNGQEAEEFTVRAKGIINATGPFTDSIRKMDEPDVK  320
            +VTG+ ++         V               T  A  ++NA G + D +     P ++
Sbjct  168  EVTGIEEEG----GVWGVVT-------------TGEADAVVNAAGAWADLLAL---PGLR  207

Query  321  EIVAPSAGVHVILPGYYSPSKMGLIDPSTSDGRVIFFLP-WQGNTIAGTTDQPTEITTQP  379
              V P  G  ++L        +  +  +   GR ++  P   G  + G TD+       P
Sbjct  208  LPVRPVRGQVLVLEPLPEALLILPVPITVDPGRGVYLRPRADGRLLLGGTDEEDG-FDDP  266

Query  380  EPSEKDINWILSEVRGYLAPDINVERSDVLAAWSGIRPLV-RDPKVKSSEALVRNHLISV  438
             P  ++I  +L   R       ++ER+     W+G+RPL    P +           ++ 
Sbjct  267  TPDPEEIEELLEAARRLFPALADIERA-----WAGLRPLPDGLPII--GRPGSPGLYLAT  319

Query  439  SPSG---LLTCAGGKWTTYR  455
               G    L    GK     
Sbjct  320  GHGGHGLTLAPGIGKLLAEL  339



Lambda      K        H        a         alpha
   0.316    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 859802570


Query= TCONS_00001391

Length=704
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465305 pfam16901, DAO_C, C-terminal domain of alpha-glyceroph...  203     5e-63
CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase. This fam...  160     2e-44


>CDD:465305 pfam16901, DAO_C, C-terminal domain of alpha-glycerophosphate 
oxidase.  DAO_C is the C-terminal region of alpha-glycerophosphate 
oxidase.
Length=126

 Score = 203 bits (520),  Expect = 5e-63, Method: Composition-based stats.
 Identities = 68/128 (53%), Positives = 86/128 (67%), Gaps = 2/128 (2%)

Query  501  CQTHQVRLIGAHGYSKTLFINLIQHFGLETDVAKHLTESYGDRAWQVAALSAPTDARFPL  560
            C T ++ L+GA GYS  L   L Q +GL+ +VA+HL   YG RA +V  L+       P 
Sbjct  1    CVTKKLPLLGADGYSANLAARLAQRYGLDEEVAEHLARRYGSRADEVLELALADGD--PE  58

Query  561  RGRRISALYPFIDGEVRYAVRHEYAQTAVDVIARRTRLAFLNAEAALEALPGIIDLMGAE  620
             G R+S  YP+I+ EV YAVRHE A T VDV+ARRTRLAFL+A+AALEALP + DLM  E
Sbjct  59   LGERLSPAYPYIEAEVVYAVRHEMALTLVDVLARRTRLAFLDADAALEALPEVADLMAEE  118

Query  621  LNWDDKRK  628
            L WD+ R+
Sbjct  119  LGWDEARR  126


>CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase.  This family includes 
various FAD dependent oxidoreductases: Glycerol-3-phosphate 
dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit 
EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate 
oxidase EC:1.4.3.1.
Length=339

 Score = 160 bits (407),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 84/380 (22%), Positives = 143/380 (38%), Gaps = 49/380 (13%)

Query  84   DLLVIGGGATGSGIALDAATRGLKVAVVERD-DFSAGTSSKSTKLVHGGVRYLEKAVWEL  142
            D++VIGGG  G   A + A RGL V ++ER  D  +G S ++  L+H G+RYLE      
Sbjct  1    DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSGASGRNAGLIHPGLRYLEP-----  55

Query  143  DYNQYKLVKEALRERKYFL-NTAPHLSSWLPIMVPVQKWWQAPYFWAGTKAYDWLAGSEG  201
                 +L  EAL   +                ++ + +  +        K         G
Sbjct  56   -SELARLALEALDLWEELEEELGIDCGFRRCGVLVLARDEEEEAL---EKLLA-ALRRLG  110

Query  202  IESSYFLTKSKAIDAFPMLRRDNLIGAMVYYDGAH-NDSRMNVSLAMTAALYGSTVVNHM  260
            + +   L   +  +  P+L    L G + Y DG H + +R+  +LA  A   G  ++   
Sbjct  111  VPAE-LLDAEELRELEPLL--PGLRGGLFYPDGGHVDPARLLRALARAAEALGVRIIEGT  167

Query  261  QVTGLTKDESGKLNGARVKDLIPGKNGQEAEEFTVRAKGIINATGPFTDSIRKMDEPDVK  320
            +VTG+ ++         V               T  A  ++NA G + D +     P ++
Sbjct  168  EVTGIEEEG----GVWGVVT-------------TGEADAVVNAAGAWADLLAL---PGLR  207

Query  321  EIVAPSAGVHVILPGYYSPSKMGLIDPSTSDGRVIFFLP-WQGNTIAGTTDQPTEITTQP  379
              V P  G  ++L        +  +  +   GR ++  P   G  + G TD+       P
Sbjct  208  LPVRPVRGQVLVLEPLPEALLILPVPITVDPGRGVYLRPRADGRLLLGGTDEEDG-FDDP  266

Query  380  EPSEKDINWILSEVRGYLAPDINVERSDVLAAWSGIRPLV-RDPKVKSSEALVRNHLISV  438
             P  ++I  +L   R       ++ER+     W+G+RPL    P +           ++ 
Sbjct  267  TPDPEEIEELLEAARRLFPALADIERA-----WAGLRPLPDGLPII--GRPGSPGLYLAT  319

Query  439  SPSG---LLTCAGGKWTTYR  455
               G    L    GK     
Sbjct  320  GHGGHGLTLAPGIGKLLAEL  339



Lambda      K        H        a         alpha
   0.315    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 901096690


Query= TCONS_00007136

Length=705
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465305 pfam16901, DAO_C, C-terminal domain of alpha-glyceroph...  203     4e-63
CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase. This fam...  161     2e-44


>CDD:465305 pfam16901, DAO_C, C-terminal domain of alpha-glycerophosphate 
oxidase.  DAO_C is the C-terminal region of alpha-glycerophosphate 
oxidase.
Length=126

 Score = 203 bits (520),  Expect = 4e-63, Method: Composition-based stats.
 Identities = 68/128 (53%), Positives = 86/128 (67%), Gaps = 2/128 (2%)

Query  501  CQTHQVRLIGAHGYSKTLFINLIQHFGLETDVAKHLTESYGDRAWQVAALSAPTDARFPL  560
            C T ++ L+GA GYS  L   L Q +GL+ +VA+HL   YG RA +V  L+       P 
Sbjct  1    CVTKKLPLLGADGYSANLAARLAQRYGLDEEVAEHLARRYGSRADEVLELALADGD--PE  58

Query  561  RGRRISALYPFIDGEVRYAVRHEYAQTAVDVIARRTRLAFLNAEAALEALPGIIDLMGAE  620
             G R+S  YP+I+ EV YAVRHE A T VDV+ARRTRLAFL+A+AALEALP + DLM  E
Sbjct  59   LGERLSPAYPYIEAEVVYAVRHEMALTLVDVLARRTRLAFLDADAALEALPEVADLMAEE  118

Query  621  LNWDDKRK  628
            L WD+ R+
Sbjct  119  LGWDEARR  126


>CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase.  This family includes 
various FAD dependent oxidoreductases: Glycerol-3-phosphate 
dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit 
EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate 
oxidase EC:1.4.3.1.
Length=339

 Score = 161 bits (408),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 84/380 (22%), Positives = 143/380 (38%), Gaps = 49/380 (13%)

Query  84   DLLVIGGGATGSGIALDAATRGLKVAVVERD-DFSAGTSSKSTKLVHGGVRYLEKAVWEL  142
            D++VIGGG  G   A + A RGL V ++ER  D  +G S ++  L+H G+RYLE      
Sbjct  1    DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSGASGRNAGLIHPGLRYLEP-----  55

Query  143  DYNQYKLVKEALRERKYFL-NTAPHLSSWLPIMVPVQKWWQAPYFWAGTKAYDWLAGSEG  201
                 +L  EAL   +                ++ + +  +        K         G
Sbjct  56   -SELARLALEALDLWEELEEELGIDCGFRRCGVLVLARDEEEEAL---EKLLA-ALRRLG  110

Query  202  IESSYFLTKSKAIDAFPMLRRDNLIGAMVYYDGAH-NDSRMNVSLAMTAALYGSTVVNHM  260
            + +   L   +  +  P+L    L G + Y DG H + +R+  +LA  A   G  ++   
Sbjct  111  VPAE-LLDAEELRELEPLL--PGLRGGLFYPDGGHVDPARLLRALARAAEALGVRIIEGT  167

Query  261  QVTGLTKDESGKLNGARVKDLIPGKNGQEAEEFTVRAKGIINATGPFTDSIRKMDEPDVK  320
            +VTG+ ++         V               T  A  ++NA G + D +     P ++
Sbjct  168  EVTGIEEEG----GVWGVVT-------------TGEADAVVNAAGAWADLLAL---PGLR  207

Query  321  EIVAPSAGVHVILPGYYSPSKMGLIDPSTSDGRVIFFLP-WQGNTIAGTTDQPTEITTQP  379
              V P  G  ++L        +  +  +   GR ++  P   G  + G TD+       P
Sbjct  208  LPVRPVRGQVLVLEPLPEALLILPVPITVDPGRGVYLRPRADGRLLLGGTDEEDG-FDDP  266

Query  380  EPSEKDINWILSEVRGYLAPDINVERSDVLAAWSGIRPLV-RDPKVKSSEALVRNHLISV  438
             P  ++I  +L   R       ++ER+     W+G+RPL    P +           ++ 
Sbjct  267  TPDPEEIEELLEAARRLFPALADIERA-----WAGLRPLPDGLPII--GRPGSPGLYLAT  319

Query  439  SPSG---LLTCAGGKWTTYR  455
               G    L    GK     
Sbjct  320  GHGGHGLTLAPGIGKLLAEL  339



Lambda      K        H        a         alpha
   0.315    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 902571480


Query= TCONS_00001392

Length=702
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465305 pfam16901, DAO_C, C-terminal domain of alpha-glyceroph...  203     5e-63
CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase. This fam...  160     2e-44


>CDD:465305 pfam16901, DAO_C, C-terminal domain of alpha-glycerophosphate 
oxidase.  DAO_C is the C-terminal region of alpha-glycerophosphate 
oxidase.
Length=126

 Score = 203 bits (520),  Expect = 5e-63, Method: Composition-based stats.
 Identities = 68/128 (53%), Positives = 86/128 (67%), Gaps = 2/128 (2%)

Query  501  CQTHQVRLIGAHGYSKTLFINLIQHFGLETDVAKHLTESYGDRAWQVAALSAPTDARFPL  560
            C T ++ L+GA GYS  L   L Q +GL+ +VA+HL   YG RA +V  L+       P 
Sbjct  1    CVTKKLPLLGADGYSANLAARLAQRYGLDEEVAEHLARRYGSRADEVLELALADGD--PE  58

Query  561  RGRRISALYPFIDGEVRYAVRHEYAQTAVDVIARRTRLAFLNAEAALEALPGIIDLMGAE  620
             G R+S  YP+I+ EV YAVRHE A T VDV+ARRTRLAFL+A+AALEALP + DLM  E
Sbjct  59   LGERLSPAYPYIEAEVVYAVRHEMALTLVDVLARRTRLAFLDADAALEALPEVADLMAEE  118

Query  621  LNWDDKRK  628
            L WD+ R+
Sbjct  119  LGWDEARR  126


>CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase.  This family includes 
various FAD dependent oxidoreductases: Glycerol-3-phosphate 
dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit 
EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate 
oxidase EC:1.4.3.1.
Length=339

 Score = 160 bits (407),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 84/380 (22%), Positives = 143/380 (38%), Gaps = 49/380 (13%)

Query  84   DLLVIGGGATGSGIALDAATRGLKVAVVERD-DFSAGTSSKSTKLVHGGVRYLEKAVWEL  142
            D++VIGGG  G   A + A RGL V ++ER  D  +G S ++  L+H G+RYLE      
Sbjct  1    DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSGASGRNAGLIHPGLRYLEP-----  55

Query  143  DYNQYKLVKEALRERKYFL-NTAPHLSSWLPIMVPVQKWWQAPYFWAGTKAYDWLAGSEG  201
                 +L  EAL   +                ++ + +  +        K         G
Sbjct  56   -SELARLALEALDLWEELEEELGIDCGFRRCGVLVLARDEEEEAL---EKLLA-ALRRLG  110

Query  202  IESSYFLTKSKAIDAFPMLRRDNLIGAMVYYDGAH-NDSRMNVSLAMTAALYGSTVVNHM  260
            + +   L   +  +  P+L    L G + Y DG H + +R+  +LA  A   G  ++   
Sbjct  111  VPAE-LLDAEELRELEPLL--PGLRGGLFYPDGGHVDPARLLRALARAAEALGVRIIEGT  167

Query  261  QVTGLTKDESGKLNGARVKDLIPGKNGQEAEEFTVRAKGIINATGPFTDSIRKMDEPDVK  320
            +VTG+ ++         V               T  A  ++NA G + D +     P ++
Sbjct  168  EVTGIEEEG----GVWGVVT-------------TGEADAVVNAAGAWADLLAL---PGLR  207

Query  321  EIVAPSAGVHVILPGYYSPSKMGLIDPSTSDGRVIFFLP-WQGNTIAGTTDQPTEITTQP  379
              V P  G  ++L        +  +  +   GR ++  P   G  + G TD+       P
Sbjct  208  LPVRPVRGQVLVLEPLPEALLILPVPITVDPGRGVYLRPRADGRLLLGGTDEEDG-FDDP  266

Query  380  EPSEKDINWILSEVRGYLAPDINVERSDVLAAWSGIRPLV-RDPKVKSSEALVRNHLISV  438
             P  ++I  +L   R       ++ER+     W+G+RPL    P +           ++ 
Sbjct  267  TPDPEEIEELLEAARRLFPALADIERA-----WAGLRPLPDGLPII--GRPGSPGLYLAT  319

Query  439  SPSG---LLTCAGGKWTTYR  455
               G    L    GK     
Sbjct  320  GHGGHGLTLAPGIGKLLAEL  339



Lambda      K        H        a         alpha
   0.315    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 898147110


Query= TCONS_00007138

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00001396

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00001397

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00001398

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00001400

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00001402

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.528    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0768    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00001404

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00001403

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428576 pfam05670, DUF814, Domain of unknown function (DUF814)...  103     4e-29


>CDD:428576 pfam05670, DUF814, Domain of unknown function (DUF814).  This 
domain occurs in proteins that have been annotated as Fibronectin/fibrinogen 
binding protein by similarity. This annotation 
comes from Bacillus subtilis YloA, where the N-terminal 
region is involved in this activity. Hence the activity of 
this C-terminal domain is unknown. This domain contains a conserved 
motif D/E-X-W/Y-X-H that may be functionally important.
Length=111

 Score = 103 bits (258),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 47/78 (60%), Gaps = 7/78 (9%)

Query  28   FHVDNLSSAHVYLRLRDGETWDQIPQPLLEDCAQLTKANSIE-GNKKDNITVIYTPWSNL  86
            FH D   SAHVYL+L +GE    IP   LE+ AQL KANSI  GNK++NI+V YTP S +
Sbjct  37   FHADKHGSAHVYLKLPEGE---DIPPETLEEAAQLAKANSIAWGNKQNNISVWYTPASQV  93

Query  87   LK---DGSMATGQVSFHN  101
             K    G + TG   F  
Sbjct  94   SKTGPSGYLDTGSFMFKG  111



Lambda      K        H        a         alpha
   0.313    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00007140

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00007141

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00007142

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00001406

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428576 pfam05670, DUF814, Domain of unknown function (DUF814)...  103     4e-29


>CDD:428576 pfam05670, DUF814, Domain of unknown function (DUF814).  This 
domain occurs in proteins that have been annotated as Fibronectin/fibrinogen 
binding protein by similarity. This annotation 
comes from Bacillus subtilis YloA, where the N-terminal 
region is involved in this activity. Hence the activity of 
this C-terminal domain is unknown. This domain contains a conserved 
motif D/E-X-W/Y-X-H that may be functionally important.
Length=111

 Score = 103 bits (258),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 47/78 (60%), Gaps = 7/78 (9%)

Query  31   FHVDNLSSAHVYLRLRDGETWDQIPQPLLEDCAQLTKANSIE-GNKKDNITVIYTPWSNL  89
            FH D   SAHVYL+L +GE    IP   LE+ AQL KANSI  GNK++NI+V YTP S +
Sbjct  37   FHADKHGSAHVYLKLPEGE---DIPPETLEEAAQLAKANSIAWGNKQNNISVWYTPASQV  93

Query  90   LK---DGSMATGQVSFHN  104
             K    G + TG   F  
Sbjct  94   SKTGPSGYLDTGSFMFKG  111



Lambda      K        H        a         alpha
   0.314    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00001407

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428576 pfam05670, DUF814, Domain of unknown function (DUF814)...  120     1e-35


>CDD:428576 pfam05670, DUF814, Domain of unknown function (DUF814).  This 
domain occurs in proteins that have been annotated as Fibronectin/fibrinogen 
binding protein by similarity. This annotation 
comes from Bacillus subtilis YloA, where the N-terminal 
region is involved in this activity. Hence the activity of 
this C-terminal domain is unknown. This domain contains a conserved 
motif D/E-X-W/Y-X-H that may be functionally important.
Length=111

 Score = 120 bits (302),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 50/117 (43%), Positives = 64/117 (55%), Gaps = 19/117 (16%)

Query  1    MVYYFTSNVVKPAAFIYVGKDKFENEDLIKYGLEK-DV--------CAHVYLRLRDGETW  51
              Y+F S+       +  G+DK ENE LIK  LE+ D+         AHVYL+L +GE  
Sbjct  1    KFYWFVSSEGYL---VIGGRDKQENELLIKKYLEEGDLWFHADKHGSAHVYLKLPEGE--  55

Query  52   DQIPQPLLEDCAQLTKANSIE-GNKKDNITVIYTPWSNLLK---DGSMATGQVSFHN  104
              IP   LE+ AQL KANSI  GNK++NI+V YTP S + K    G + TG   F  
Sbjct  56   -DIPPETLEEAAQLAKANSIAWGNKQNNISVWYTPASQVSKTGPSGYLDTGSFMFKG  111



Lambda      K        H        a         alpha
   0.316    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00001409

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00001408

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428576 pfam05670, DUF814, Domain of unknown function (DUF814)...  103     4e-29


>CDD:428576 pfam05670, DUF814, Domain of unknown function (DUF814).  This 
domain occurs in proteins that have been annotated as Fibronectin/fibrinogen 
binding protein by similarity. This annotation 
comes from Bacillus subtilis YloA, where the N-terminal 
region is involved in this activity. Hence the activity of 
this C-terminal domain is unknown. This domain contains a conserved 
motif D/E-X-W/Y-X-H that may be functionally important.
Length=111

 Score = 103 bits (258),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 47/78 (60%), Gaps = 7/78 (9%)

Query  28   FHVDNLSSAHVYLRLRDGETWDQIPQPLLEDCAQLTKANSIE-GNKKDNITVIYTPWSNL  86
            FH D   SAHVYL+L +GE    IP   LE+ AQL KANSI  GNK++NI+V YTP S +
Sbjct  37   FHADKHGSAHVYLKLPEGE---DIPPETLEEAAQLAKANSIAWGNKQNNISVWYTPASQV  93

Query  87   LK---DGSMATGQVSFHN  101
             K    G + TG   F  
Sbjct  94   SKTGPSGYLDTGSFMFKG  111



Lambda      K        H        a         alpha
   0.313    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00007144

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00007143

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00001410

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00001411

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00007145

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00001412

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00007146

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395500 pfam00625, Guanylate_kin, Guanylate kinase                 241     3e-82


>CDD:395500 pfam00625, Guanylate_kin, Guanylate kinase.  
Length=182

 Score = 241 bits (617),  Expect = 3e-82, Method: Composition-based stats.
 Identities = 88/181 (49%), Positives = 131/181 (72%), Gaps = 4/181 (2%)

Query  38   RPVVVSGPSGTGKSTLLKRLFAEYPDTFDLSVSHTTRAPRPGEENGREYYFTTKEDFLDL  97
            RPVV+SGPSG GKS + K L +EYPD F  SV HTTR PR GE +G++YYF +KE+    
Sbjct  3    RPVVLSGPSGVGKSHIKKALLSEYPDKFGYSVPHTTRPPRKGEVDGKDYYFVSKEEMERD  62

Query  98   VSKNAFIEHAQFGGNYYGTTVQAVKDVAQKGKICVLDIEMEGVKQVKRTDLDARFLFLAP  157
            +S N F+E+AQF GN YGT+V+ ++ + ++GKI +LD++ +GVKQ+++ +L    +F+ P
Sbjct  63   ISANEFLEYAQFSGNMYGTSVETIEQIHEQGKIVILDVDPQGVKQLRKAELSPISVFIKP  122

Query  158  PSLEELEKRLRGRATETEESLTKRLAQAKNELEYAAQPGSHDKIVVNDDLEKAYKELRDW  217
            PSL+ L++RL+GR  E EE + KR+A A+ E ++       D I+VNDDLE+AYK+L++ 
Sbjct  123  PSLKVLQRRLKGRGKEQEEKINKRMAAAEQEFQHY----EFDVIIVNDDLEEAYKKLKEA  178

Query  218  I  218
            +
Sbjct  179  L  179



Lambda      K        H        a         alpha
   0.316    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00001413

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431241 pfam10375, GRAB, GRIP-related Arf-binding domain. The ...  85.7    2e-21


>CDD:431241 pfam10375, GRAB, GRIP-related Arf-binding domain.  The GRAB (GRIP-related 
Arf-binding) domain is towards the C-terminus of 
Rud3 type proteins. This domain is related to the GRIP domain, 
but the conserved tyrosine residue found at position 4 
in all GRIP domains is replaced by a leucine residue. The Arf 
small GTPase is localized to the cis-Golgi where it recruits 
proteins via their GRAB domain, as part of the transport 
of cargo from the endoplasmic reticulum to the plasma membrane.
Length=49

 Score = 85.7 bits (213),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 33/49 (67%), Positives = 38/49 (78%), Gaps = 0/49 (0%)

Query  411  RAEDNVDRHIVTNHLLQFLALDRSDPKKFQILQLIAALLGWTDEQREQA  459
             +ED VDR +VTN LL FL++ R D KKF+ILQLIA LL W DEQREQA
Sbjct  1    SSEDTVDRQLVTNLLLSFLSIPRGDTKKFEILQLIANLLEWDDEQREQA  49



Lambda      K        H        a         alpha
   0.308    0.125    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00001414

Length=302


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.316    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00001415

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00001416

Length=144
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426430 pfam01783, Ribosomal_L32p, Ribosomal L32p protein family   58.4    4e-13


>CDD:426430 pfam01783, Ribosomal_L32p, Ribosomal L32p protein family.  
Length=56

 Score = 58.4 bits (142),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 22/47 (47%), Positives = 28/47 (60%), Gaps = 2/47 (4%)

Query  84   AVPKKKTSHMKKRHRQMAGKALKDLKNLNTCSGCGRMKRAHVLCPHC  130
            AVPK+KTS  ++R R+ A   LK   NL  C  CG +K  H +CP C
Sbjct  1    AVPKRKTSKSRRRKRR-AHWKLKA-PNLVECPNCGELKLPHRVCPSC  45



Lambda      K        H        a         alpha
   0.320    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00001417

Length=138
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426430 pfam01783, Ribosomal_L32p, Ribosomal L32p protein family   59.9    8e-14


>CDD:426430 pfam01783, Ribosomal_L32p, Ribosomal L32p protein family.  
Length=56

 Score = 59.9 bits (146),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 22/47 (47%), Positives = 28/47 (60%), Gaps = 2/47 (4%)

Query  84   AVPKKKTSHMKKRHRQMAGKALKDLKNLNTCSGCGRMKRAHVLCPHC  130
            AVPK+KTS  ++R R+ A   LK   NL  C  CG +K  H +CP C
Sbjct  1    AVPKRKTSKSRRRKRR-AHWKLKA-PNLVECPNCGELKLPHRVCPSC  45



Lambda      K        H        a         alpha
   0.323    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00007147

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00007148

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462402 pfam08234, Spindle_Spc25, Chromosome segregation prote...  90.3    4e-25


>CDD:462402 pfam08234, Spindle_Spc25, Chromosome segregation protein Spc25. 
 This is a family of chromosome segregation proteins. It 
contains Spc25, which is a conserved eukaryotic kinetochore 
protein involved in cell division. In fungi the Spc25 protein 
is a subunit of the Nuf2-Ndc80 complex, and in vertebrates 
it forms part of the Ndc80 complex.
Length=71

 Score = 90.3 bits (225),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 29/71 (41%), Positives = 40/71 (56%), Gaps = 0/71 (0%)

Query  102  GREDRLKFVYSHLLEKDWDTEAWFELGTASRDYEVFHTRPKVDREALEREVDLLNEDRDF  161
               D+LKFV++++  KD + E  F L  +   YEV    PK++ E LE  +D LNE  D 
Sbjct  1    IEGDKLKFVFTNIDPKDPEREFSFTLDVSEDTYEVLECDPKLEDEDLEELLDELNETNDL  60

Query  162  GAFLKRMRRLL  172
              FLKRMR+  
Sbjct  61   FKFLKRMRKAF  71



Lambda      K        H        a         alpha
   0.318    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00001418

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462402 pfam08234, Spindle_Spc25, Chromosome segregation prote...  90.3    4e-25


>CDD:462402 pfam08234, Spindle_Spc25, Chromosome segregation protein Spc25. 
 This is a family of chromosome segregation proteins. It 
contains Spc25, which is a conserved eukaryotic kinetochore 
protein involved in cell division. In fungi the Spc25 protein 
is a subunit of the Nuf2-Ndc80 complex, and in vertebrates 
it forms part of the Ndc80 complex.
Length=71

 Score = 90.3 bits (225),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 29/71 (41%), Positives = 40/71 (56%), Gaps = 0/71 (0%)

Query  102  GREDRLKFVYSHLLEKDWDTEAWFELGTASRDYEVFHTRPKVDREALEREVDLLNEDRDF  161
               D+LKFV++++  KD + E  F L  +   YEV    PK++ E LE  +D LNE  D 
Sbjct  1    IEGDKLKFVFTNIDPKDPEREFSFTLDVSEDTYEVLECDPKLEDEDLEELLDELNETNDL  60

Query  162  GAFLKRMRRLL  172
              FLKRMR+  
Sbjct  61   FKFLKRMRKAF  71



Lambda      K        H        a         alpha
   0.318    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00007149

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462402 pfam08234, Spindle_Spc25, Chromosome segregation prote...  90.3    4e-25


>CDD:462402 pfam08234, Spindle_Spc25, Chromosome segregation protein Spc25. 
 This is a family of chromosome segregation proteins. It 
contains Spc25, which is a conserved eukaryotic kinetochore 
protein involved in cell division. In fungi the Spc25 protein 
is a subunit of the Nuf2-Ndc80 complex, and in vertebrates 
it forms part of the Ndc80 complex.
Length=71

 Score = 90.3 bits (225),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 29/71 (41%), Positives = 40/71 (56%), Gaps = 0/71 (0%)

Query  102  GREDRLKFVYSHLLEKDWDTEAWFELGTASRDYEVFHTRPKVDREALEREVDLLNEDRDF  161
               D+LKFV++++  KD + E  F L  +   YEV    PK++ E LE  +D LNE  D 
Sbjct  1    IEGDKLKFVFTNIDPKDPEREFSFTLDVSEDTYEVLECDPKLEDEDLEELLDELNETNDL  60

Query  162  GAFLKRMRRLL  172
              FLKRMR+  
Sbjct  61   FKFLKRMRKAF  71



Lambda      K        H        a         alpha
   0.318    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00001419

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462402 pfam08234, Spindle_Spc25, Chromosome segregation prote...  90.3    4e-25


>CDD:462402 pfam08234, Spindle_Spc25, Chromosome segregation protein Spc25. 
 This is a family of chromosome segregation proteins. It 
contains Spc25, which is a conserved eukaryotic kinetochore 
protein involved in cell division. In fungi the Spc25 protein 
is a subunit of the Nuf2-Ndc80 complex, and in vertebrates 
it forms part of the Ndc80 complex.
Length=71

 Score = 90.3 bits (225),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 29/71 (41%), Positives = 40/71 (56%), Gaps = 0/71 (0%)

Query  102  GREDRLKFVYSHLLEKDWDTEAWFELGTASRDYEVFHTRPKVDREALEREVDLLNEDRDF  161
               D+LKFV++++  KD + E  F L  +   YEV    PK++ E LE  +D LNE  D 
Sbjct  1    IEGDKLKFVFTNIDPKDPEREFSFTLDVSEDTYEVLECDPKLEDEDLEELLDELNETNDL  60

Query  162  GAFLKRMRRLL  172
              FLKRMR+  
Sbjct  61   FKFLKRMRKAF  71



Lambda      K        H        a         alpha
   0.318    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00007151

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459804 pfam00403, HMA, Heavy-metal-associated domain              51.5    3e-11


>CDD:459804 pfam00403, HMA, Heavy-metal-associated domain.  
Length=58

 Score = 51.5 bits (124),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (4%)

Query  8   FNVS-MSCGGCSGAVERVLKRLDGVKSFDVNLDSQTALVTTEPT-VSYETVLATIKK  62
           F VS M CGGC+  VE+ L  L GV S  V+L ++T  VT +      E ++  I+K
Sbjct  2   FRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58



Lambda      K        H        a         alpha
   0.311    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00007150

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00001421

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  123     4e-34
CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon. This is a typic...  109     9e-30


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 123 bits (310),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 44/75 (59%), Positives = 50/75 (67%), Gaps = 1/75 (1%)

Query  309  CRHYRRNVKLQCFACKKWYTCRFCHDEVED-HHLDRPKTENMLCMLCGHAQPAAAVCRQC  367
            C+HY RN KL+C  C KWY CR CHDEVED H LDR     MLCMLC   QP A +C  C
Sbjct  1    CKHYHRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPVAVLCGNC  60

Query  368  GKLAAQYYCNICKLW  382
            G   A+Y+C ICKL+
Sbjct  61   GVTFAEYFCPICKLY  75


>CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon.  This is a typical zinc-ribbon 
finger, with each pair of zinc-ligands coming from 
more-or-less either side of two knuckles. It is found in eukaryotes.
Length=59

 Score = 109 bits (276),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  485  NMESTFRNLDRTIQSQPMPAEFKDTSALIHCNDCGAKSVVRYHWLGLKCDMCESYNTA  542
            +ME+ +R LD  I +QPMP E+ +   +I CNDC AKS V +H+LGLKC  C SYNT 
Sbjct  2    DMEAYWRALDAEIAAQPMPEEYANWRVVILCNDCEAKSEVPFHFLGLKCSHCGSYNTR  59



Lambda      K        H        a         alpha
   0.315    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00007152

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00001422

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431141 pfam10214, Rrn6, RNA polymerase I-specific transcripti...  557     0.0  


>CDD:431141 pfam10214, Rrn6, RNA polymerase I-specific transcription-initiation 
factor.  RNA polymerase I-specific transcription-initiation 
factor Rrn6 and Rrn7 represent components of a multisubunit 
transcription factor essential for the initiation of 
rDNA transcription by Pol I. These proteins are found in fungi.
Length=846

 Score = 557 bits (1436),  Expect = 0.0, Method: Composition-based stats.
 Identities = 226/574 (39%), Positives = 313/574 (55%), Gaps = 47/574 (8%)

Query  97   DPLVSSLFDLGNAVDIENHESGNRVVPIAITVGGECCNVISFRKIEEGTVELKHGMKARV  156
            DP V SL  +G   D+ +H SG+R VPIA    GE  +++    ++E      +     +
Sbjct  1    DPTVGSLLAIGKIQDVSDHRSGSRTVPIAAYASGESGSILRLSVLDEEKWGWGNDKSVWL  60

Query  157  RIPMIGDAECTEWSAGGAPVRQICFARTVE---EKPTWAAARFPHSTIVFRPLYRRKPVS  213
            R+P I D+E  EW + GAP++QI FA++ E   EK  W A R   ST +FRP Y R PV 
Sbjct  61   RVPTIDDSESGEWISDGAPIKQIKFAQSSERFDEKSDWLAVRTETSTTIFRPEYHRVPVP  120

Query  214  MHIYQDGDPVVSSQKRSSRLDANPLIEISHSQTGGYGHADVTFNPWYQKQLAIVDERGNW  273
            +             K  SR+D NPL+EIS SQTGG+ HADV FNPW Q+Q AIVDE+GNW
Sbjct  121  VS------SSSIDSKTPSRIDPNPLLEISSSQTGGFPHADVAFNPWDQRQFAIVDEKGNW  174

Query  274  SVWEMVGRHRRGKGNWTASCVKSGSLPWPDLGHAQNISRSPRHDGWAVIEWVGDVNSFIV  333
            SVW++ GR R+ K  W AS  KSGS+  P+L            DGW  I WV DVN+ +V
Sbjct  175  SVWDIPGRKRKNKSKWRASLGKSGSIFDPELED---PPSPTELDGWKRILWVSDVNTLLV  231

Query  334  SDRRCPILYRTEGNETLPFAIELELKRKSEWVLDVKRSACNVSQVFILTTSRIFWLDVSS  393
             +RR  + +  +GN      I L L+  SEW+LDVKRS  + S VFILT++ I WLDVSS
Sbjct  232  CNRRKLVEFDIKGNWQYLLVIALTLEWSSEWILDVKRSPVDPSHVFILTSTEIIWLDVSS  291

Query  394  VLAADSQDGISRPSLLPILSWRHFRDSEDTTLRLSSLVVS----EDLYLVLYSRLNHVVL  449
               +D  +G   P L  +LSW+HFRD ED TLRL+   V     +DL++++YSRLN++V 
Sbjct  292  SNLSDDDEG---PPLTRLLSWKHFRDPEDPTLRLTVQKVGDGSEDDLFVLIYSRLNNLVQ  348

Query  450  VYRVPIAWDGYMHLTSIPDPFVLEIPPVSEESAETQISPNAAQFSTLVLRE---IAHAPS  506
            V+   I+ DG +  +SI DPF+L++P        ++    ++  S++       I   PS
Sbjct  349  VFWFSISSDGPLIQSSI-DPFILDLP---GFIHSSEGEAASSGISSIQFLPVFFIEEDPS  404

Query  507  AGNKEKYDAAAKFIKLFTIDSRLAVRESIYIGHARDSGVGADDQQLGKDALRLR------  560
               ++  +   KF +LF +DS L++ ES+Y      S   +D+ +     LRLR      
Sbjct  405  GLGRDYSNDGVKFFQLFVLDSDLSLHESLY----SSSTSPSDELRSPPKVLRLRDLSKSS  460

Query  561  --KRYPGVRRKQSTRSGGDFVVDDWDESVVSRGMFTAADTGISHITPLATPQWKTDYSSI  618
              ++  G R+K  + S  DFVV D  E +V  G   +A  G S    LA PQW  D+S I
Sbjct  461  ITRKRKGKRKKFVSTSEDDFVVPDGLEELV-IGPEPSAKLGRSSSISLAPPQWTLDFSRI  519

Query  619  YAIASGKIIAGSNEVGEEQDRGFQDSINELKDKM  652
            YAIA          V E Q+  FQD    L + +
Sbjct  520  YAIAQ--------SVEEAQETSFQDYGYRLSEAI  545



Lambda      K        H        a         alpha
   0.318    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 845054670


Query= TCONS_00007153

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459804 pfam00403, HMA, Heavy-metal-associated domain              51.5    3e-11


>CDD:459804 pfam00403, HMA, Heavy-metal-associated domain.  
Length=58

 Score = 51.5 bits (124),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (4%)

Query  8   FNVS-MSCGGCSGAVERVLKRLDGVKSFDVNLDSQTALVTTEPT-VSYETVLATIKK  62
           F VS M CGGC+  VE+ L  L GV S  V+L ++T  VT +      E ++  I+K
Sbjct  2   FRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58



Lambda      K        H        a         alpha
   0.311    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00001423

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.144    0.534    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00007155

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00007154

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00001424

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  123     4e-34
CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon. This is a typic...  109     9e-30


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 123 bits (310),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 44/75 (59%), Positives = 50/75 (67%), Gaps = 1/75 (1%)

Query  309  CRHYRRNVKLQCFACKKWYTCRFCHDEVED-HHLDRPKTENMLCMLCGHAQPAAAVCRQC  367
            C+HY RN KL+C  C KWY CR CHDEVED H LDR     MLCMLC   QP A +C  C
Sbjct  1    CKHYHRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPVAVLCGNC  60

Query  368  GKLAAQYYCNICKLW  382
            G   A+Y+C ICKL+
Sbjct  61   GVTFAEYFCPICKLY  75


>CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon.  This is a typical zinc-ribbon 
finger, with each pair of zinc-ligands coming from 
more-or-less either side of two knuckles. It is found in eukaryotes.
Length=59

 Score = 109 bits (276),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  485  NMESTFRNLDRTIQSQPMPAEFKDTSALIHCNDCGAKSVVRYHWLGLKCDMCESYNTA  542
            +ME+ +R LD  I +QPMP E+ +   +I CNDC AKS V +H+LGLKC  C SYNT 
Sbjct  2    DMEAYWRALDAEIAAQPMPEEYANWRVVILCNDCEAKSEVPFHFLGLKCSHCGSYNTR  59



Lambda      K        H        a         alpha
   0.315    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00007157

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459804 pfam00403, HMA, Heavy-metal-associated domain              51.5    3e-11


>CDD:459804 pfam00403, HMA, Heavy-metal-associated domain.  
Length=58

 Score = 51.5 bits (124),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (4%)

Query  8   FNVS-MSCGGCSGAVERVLKRLDGVKSFDVNLDSQTALVTTEPT-VSYETVLATIKK  62
           F VS M CGGC+  VE+ L  L GV S  V+L ++T  VT +      E ++  I+K
Sbjct  2   FRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58



Lambda      K        H        a         alpha
   0.311    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00001425

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459804 pfam00403, HMA, Heavy-metal-associated domain              51.5    3e-11


>CDD:459804 pfam00403, HMA, Heavy-metal-associated domain.  
Length=58

 Score = 51.5 bits (124),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (4%)

Query  8   FNVS-MSCGGCSGAVERVLKRLDGVKSFDVNLDSQTALVTTEPT-VSYETVLATIKK  62
           F VS M CGGC+  VE+ L  L GV S  V+L ++T  VT +      E ++  I+K
Sbjct  2   FRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58



Lambda      K        H        a         alpha
   0.311    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00001426

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00007159

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400342 pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase...  213     3e-65


>CDD:400342 pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127. 
 One member of this family, from Bidobacterium longicum, UniProtKB:E8MGH8, 
has been characterized as an unusual beta-L-arabinofuranosidase 
enzyme, EC:3.2.1.185. It rleases l-arabinose 
from the l-arabinofuranose (Araf)-beta1,2-Araf disaccharide 
and also transglycosylates 1-alkanols with retention of 
the anomeric configuration. Terminal beta-l-arabinofuranosyl 
residues have been found in arabinogalactan proteins from 
a mumber of different plantt species. beta-l-Arabinofuranosyl 
linkages with 1-4 arabinofuranosides are also found in the 
sugar chains of extensin and solanaceous lectins, hydroxyproline 
(Hyp)2-rich glycoproteins that are widely observed in 
plant cell wall fractions. The critical residue for catalytic 
activity is Glu-338, in a ET/SCAS sequence context.
Length=503

 Score = 213 bits (545),  Expect = 3e-65, Method: Composition-based stats.
 Identities = 96/356 (27%), Positives = 137/356 (38%), Gaps = 64/356 (18%)

Query  23   DSFWAQRRQVVRSQTLRHQLQMLKDTGRYDAFKLKWHPSYSDPCTVWPVPNHLFWDSDVA  82
            DSF+  R+Q  R   L      L  T R +A      PS +     W  P   F   D+ 
Sbjct  6    DSFFGDRQQTNREYLLPLDPDRLLHTFRKEAGL----PSKAIAYGGWEHPGFPFRGHDLG  61

Query  83   KWIEGACYFLMDYPDEEIDAAIRELVEMIQNAQQSDGYLNIHYTVVE-----PGKRFTNL  137
             W+    Y L    D E++A +  LV+ +  AQQ DGYL  +              +   
Sbjct  62   HWLSAVAYMLASTGDPELEARLDRLVDELAEAQQGDGYLGTYPESNFDRNEAGKGVWAP-  120

Query  138  RDMHELYNAGHLVEAALAHRLLYRNDDLLSPILK---YVALLAATFGNKEGQKAGYPGHP  194
               HELYN G L+   + +  L      L    +   ++  +    G+++GQ+   P H 
Sbjct  121  --NHELYNLGKLIAGLVDYYQLTGKTQALDVATRLADWLYDVTDVLGDEQGQRVLVPEHG  178

Query  195  EIELALLRLYKVTQDPEHLRLARFFLEERGNPSGGKERRHYYDVEAEVRGERKHEVPEAY  254
             I  AL+ LY++T D  +L LA+ F+  RG            D                 
Sbjct  179  GINEALVELYELTGDKRYLDLAKRFIHNRG-----------LDP----------------  211

Query  255  PAARSYWYQQAHVPIAQQQTIEGHAVRAMYLLTSVADLVRICEPSSDVANKFVPALHRLW  314
                   Y Q  +P   Q T  GHAVR        AD+       + +      A    W
Sbjct  212  -----LAYGQDELPGRHQNTAIGHAVRGA------ADVYEETGDDALLK-----AAEFFW  255

Query  315  SNMIEKKSYVTGGIGAMKQWEGFGIDYFLPHGTDEGGCYAETCAAIGVMMLAERLL  370
             N++    YVTGG GA  + E FG  Y LP+       Y ETCA+  ++ L  RL 
Sbjct  256  DNVVTHHMYVTGGNGA--RHEHFGPPYELPNRLA----YCETCASYNMLKLTRRLF  305



Lambda      K        H        a         alpha
   0.321    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00001427

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  123     4e-34
CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon. This is a typic...  109     9e-30


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 123 bits (310),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 44/75 (59%), Positives = 50/75 (67%), Gaps = 1/75 (1%)

Query  309  CRHYRRNVKLQCFACKKWYTCRFCHDEVED-HHLDRPKTENMLCMLCGHAQPAAAVCRQC  367
            C+HY RN KL+C  C KWY CR CHDEVED H LDR     MLCMLC   QP A +C  C
Sbjct  1    CKHYHRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPVAVLCGNC  60

Query  368  GKLAAQYYCNICKLW  382
            G   A+Y+C ICKL+
Sbjct  61   GVTFAEYFCPICKLY  75


>CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon.  This is a typical zinc-ribbon 
finger, with each pair of zinc-ligands coming from 
more-or-less either side of two knuckles. It is found in eukaryotes.
Length=59

 Score = 109 bits (276),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  485  NMESTFRNLDRTIQSQPMPAEFKDTSALIHCNDCGAKSVVRYHWLGLKCDMCESYNTA  542
            +ME+ +R LD  I +QPMP E+ +   +I CNDC AKS V +H+LGLKC  C SYNT 
Sbjct  2    DMEAYWRALDAEIAAQPMPEEYANWRVVILCNDCEAKSEVPFHFLGLKCSHCGSYNTR  59



Lambda      K        H        a         alpha
   0.315    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00001428

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  123     4e-34
CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon. This is a typic...  109     9e-30


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 123 bits (310),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 44/75 (59%), Positives = 50/75 (67%), Gaps = 1/75 (1%)

Query  309  CRHYRRNVKLQCFACKKWYTCRFCHDEVED-HHLDRPKTENMLCMLCGHAQPAAAVCRQC  367
            C+HY RN KL+C  C KWY CR CHDEVED H LDR     MLCMLC   QP A +C  C
Sbjct  1    CKHYHRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPVAVLCGNC  60

Query  368  GKLAAQYYCNICKLW  382
            G   A+Y+C ICKL+
Sbjct  61   GVTFAEYFCPICKLY  75


>CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon.  This is a typical zinc-ribbon 
finger, with each pair of zinc-ligands coming from 
more-or-less either side of two knuckles. It is found in eukaryotes.
Length=59

 Score = 109 bits (276),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  485  NMESTFRNLDRTIQSQPMPAEFKDTSALIHCNDCGAKSVVRYHWLGLKCDMCESYNTA  542
            +ME+ +R LD  I +QPMP E+ +   +I CNDC AKS V +H+LGLKC  C SYNT 
Sbjct  2    DMEAYWRALDAEIAAQPMPEEYANWRVVILCNDCEAKSEVPFHFLGLKCSHCGSYNTR  59



Lambda      K        H        a         alpha
   0.315    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00007160

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase          159     3e-46


>CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase.  
Length=404

 Score = 159 bits (405),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 56/170 (33%), Positives = 88/170 (52%), Gaps = 10/170 (6%)

Query  1    MYDVRLRDTYPSCGMNWPTDLVDVKPYLQRPDVVQALNINPEKKSGWEECSGAVSSTFNA  60
             Y++    +  +CG   P D    + YL RP+V +AL++N      WEEC+  V   +  
Sbjct  243  PYNIYTPCSTDTCGGYDPYDTSYAEKYLNRPEVRKALHVNDSVGK-WEECNDDVF-NWLY  300

Query  61   ANSLPSV-QLLPELLESGIPILLFSGDKDLICNHVGTEQLINNMKWNGGTGFETSPGVWA  119
             + + S+  ++P LLE G+ +L++SGD DLICN++GTE  I  + W+G          + 
Sbjct  301  DDIMKSMIPIVPNLLEGGLRVLIYSGDVDLICNYLGTEAWIKALNWSGKDD-------FR  353

Query  120  PRHDWTFEGEPAGIYQYARNLTYVLFYNASHMVPYDLPRQSRDMLDRFMK  169
            P      +G+ AG  +   NLT+     A HMVP D P ++  M  RF+ 
Sbjct  354  PWMVSPVDGQVAGYVKTYGNLTFATVKGAGHMVPEDQPEEALQMFQRFIS  403



Lambda      K        H        a         alpha
   0.314    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00007161

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00007162

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0768    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00007163

Length=715
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  121     1e-33
CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon. This is a typic...  109     1e-29


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 121 bits (306),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 44/75 (59%), Positives = 50/75 (67%), Gaps = 1/75 (1%)

Query  309  CRHYRRNVKLQCFACKKWYTCRFCHDEVED-HHLDRPKTENMLCMLCGHAQPAAAVCRQC  367
            C+HY RN KL+C  C KWY CR CHDEVED H LDR     MLCMLC   QP A +C  C
Sbjct  1    CKHYHRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPVAVLCGNC  60

Query  368  GKLAAQYYCNICKLW  382
            G   A+Y+C ICKL+
Sbjct  61   GVTFAEYFCPICKLY  75


>CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon.  This is a typical zinc-ribbon 
finger, with each pair of zinc-ligands coming from 
more-or-less either side of two knuckles. It is found in eukaryotes.
Length=59

 Score = 109 bits (274),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  485  NMESTFRNLDRTIQSQPMPAEFKDTSALIHCNDCGAKSVVRYHWLGLKCDMCESYNTA  542
            +ME+ +R LD  I +QPMP E+ +   +I CNDC AKS V +H+LGLKC  C SYNT 
Sbjct  2    DMEAYWRALDAEIAAQPMPEEYANWRVVILCNDCEAKSEVPFHFLGLKCSHCGSYNTR  59



Lambda      K        H        a         alpha
   0.315    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 903649392


Query= TCONS_00007164

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  123     4e-34
CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon. This is a typic...  109     9e-30


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 123 bits (310),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 44/75 (59%), Positives = 50/75 (67%), Gaps = 1/75 (1%)

Query  309  CRHYRRNVKLQCFACKKWYTCRFCHDEVED-HHLDRPKTENMLCMLCGHAQPAAAVCRQC  367
            C+HY RN KL+C  C KWY CR CHDEVED H LDR     MLCMLC   QP A +C  C
Sbjct  1    CKHYHRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPVAVLCGNC  60

Query  368  GKLAAQYYCNICKLW  382
            G   A+Y+C ICKL+
Sbjct  61   GVTFAEYFCPICKLY  75


>CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon.  This is a typical zinc-ribbon 
finger, with each pair of zinc-ligands coming from 
more-or-less either side of two knuckles. It is found in eukaryotes.
Length=59

 Score = 109 bits (276),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  485  NMESTFRNLDRTIQSQPMPAEFKDTSALIHCNDCGAKSVVRYHWLGLKCDMCESYNTA  542
            +ME+ +R LD  I +QPMP E+ +   +I CNDC AKS V +H+LGLKC  C SYNT 
Sbjct  2    DMEAYWRALDAEIAAQPMPEEYANWRVVILCNDCEAKSEVPFHFLGLKCSHCGSYNTR  59



Lambda      K        H        a         alpha
   0.315    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00001431

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  123     4e-34
CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon. This is a typic...  109     9e-30


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 123 bits (310),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 44/75 (59%), Positives = 50/75 (67%), Gaps = 1/75 (1%)

Query  309  CRHYRRNVKLQCFACKKWYTCRFCHDEVED-HHLDRPKTENMLCMLCGHAQPAAAVCRQC  367
            C+HY RN KL+C  C KWY CR CHDEVED H LDR     MLCMLC   QP A +C  C
Sbjct  1    CKHYHRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPVAVLCGNC  60

Query  368  GKLAAQYYCNICKLW  382
            G   A+Y+C ICKL+
Sbjct  61   GVTFAEYFCPICKLY  75


>CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon.  This is a typical zinc-ribbon 
finger, with each pair of zinc-ligands coming from 
more-or-less either side of two knuckles. It is found in eukaryotes.
Length=59

 Score = 109 bits (276),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  485  NMESTFRNLDRTIQSQPMPAEFKDTSALIHCNDCGAKSVVRYHWLGLKCDMCESYNTA  542
            +ME+ +R LD  I +QPMP E+ +   +I CNDC AKS V +H+LGLKC  C SYNT 
Sbjct  2    DMEAYWRALDAEIAAQPMPEEYANWRVVILCNDCEAKSEVPFHFLGLKCSHCGSYNTR  59



Lambda      K        H        a         alpha
   0.315    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00001430

Length=715
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  121     1e-33
CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon. This is a typic...  109     1e-29


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 121 bits (306),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 44/75 (59%), Positives = 50/75 (67%), Gaps = 1/75 (1%)

Query  309  CRHYRRNVKLQCFACKKWYTCRFCHDEVED-HHLDRPKTENMLCMLCGHAQPAAAVCRQC  367
            C+HY RN KL+C  C KWY CR CHDEVED H LDR     MLCMLC   QP A +C  C
Sbjct  1    CKHYHRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPVAVLCGNC  60

Query  368  GKLAAQYYCNICKLW  382
            G   A+Y+C ICKL+
Sbjct  61   GVTFAEYFCPICKLY  75


>CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon.  This is a typical zinc-ribbon 
finger, with each pair of zinc-ligands coming from 
more-or-less either side of two knuckles. It is found in eukaryotes.
Length=59

 Score = 109 bits (274),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  485  NMESTFRNLDRTIQSQPMPAEFKDTSALIHCNDCGAKSVVRYHWLGLKCDMCESYNTA  542
            +ME+ +R LD  I +QPMP E+ +   +I CNDC AKS V +H+LGLKC  C SYNT 
Sbjct  2    DMEAYWRALDAEIAAQPMPEEYANWRVVILCNDCEAKSEVPFHFLGLKCSHCGSYNTR  59



Lambda      K        H        a         alpha
   0.315    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 903649392


Query= TCONS_00001432

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  121     9e-35


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 121 bits (306),  Expect = 9e-35, Method: Composition-based stats.
 Identities = 44/75 (59%), Positives = 50/75 (67%), Gaps = 1/75 (1%)

Query  309  CRHYRRNVKLQCFACKKWYTCRFCHDEVED-HHLDRPKTENMLCMLCGHAQPAAAVCRQC  367
            C+HY RN KL+C  C KWY CR CHDEVED H LDR     MLCMLC   QP A +C  C
Sbjct  1    CKHYHRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPVAVLCGNC  60

Query  368  GKLAAQYYCNICKLW  382
            G   A+Y+C ICKL+
Sbjct  61   GVTFAEYFCPICKLY  75



Lambda      K        H        a         alpha
   0.316    0.130    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00007165

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  116     4e-32
CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon. This is a typic...  107     5e-29


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 116 bits (292),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 44/75 (59%), Positives = 50/75 (67%), Gaps = 1/75 (1%)

Query  133  CRHYRRNVKLQCFACKKWYTCRFCHDEVED-HHLDRPKTENMLCMLCGHAQPAAAVCRQC  191
            C+HY RN KL+C  C KWY CR CHDEVED H LDR     MLCMLC   QP A +C  C
Sbjct  1    CKHYHRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPVAVLCGNC  60

Query  192  GKLAAQYYCNICKLW  206
            G   A+Y+C ICKL+
Sbjct  61   GVTFAEYFCPICKLY  75


>CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon.  This is a typical zinc-ribbon 
finger, with each pair of zinc-ligands coming from 
more-or-less either side of two knuckles. It is found in eukaryotes.
Length=59

 Score = 107 bits (269),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  309  NMESTFRNLDRTIQSQPMPAEFKDTSALIHCNDCGAKSVVRYHWLGLKCDMCESYNTA  366
            +ME+ +R LD  I +QPMP E+ +   +I CNDC AKS V +H+LGLKC  C SYNT 
Sbjct  2    DMEAYWRALDAEIAAQPMPEEYANWRVVILCNDCEAKSEVPFHFLGLKCSHCGSYNTR  59



Lambda      K        H        a         alpha
   0.317    0.132    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 705370016


Query= TCONS_00007166

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  118     8e-33
CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon. This is a typic...  108     3e-29


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 118 bits (299),  Expect = 8e-33, Method: Composition-based stats.
 Identities = 44/75 (59%), Positives = 50/75 (67%), Gaps = 1/75 (1%)

Query  219  CRHYRRNVKLQCFACKKWYTCRFCHDEVED-HHLDRPKTENMLCMLCGHAQPAAAVCRQC  277
            C+HY RN KL+C  C KWY CR CHDEVED H LDR     MLCMLC   QP A +C  C
Sbjct  1    CKHYHRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPVAVLCGNC  60

Query  278  GKLAAQYYCNICKLW  292
            G   A+Y+C ICKL+
Sbjct  61   GVTFAEYFCPICKLY  75


>CDD:464215 pfam14599, zinc_ribbon_6, Zinc-ribbon.  This is a typical zinc-ribbon 
finger, with each pair of zinc-ligands coming from 
more-or-less either side of two knuckles. It is found in eukaryotes.
Length=59

 Score = 108 bits (271),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  395  NMESTFRNLDRTIQSQPMPAEFKDTSALIHCNDCGAKSVVRYHWLGLKCDMCESYNTA  452
            +ME+ +R LD  I +QPMP E+ +   +I CNDC AKS V +H+LGLKC  C SYNT 
Sbjct  2    DMEAYWRALDAEIAAQPMPEEYANWRVVILCNDCEAKSEVPFHFLGLKCSHCGSYNTR  59



Lambda      K        H        a         alpha
   0.317    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784588280


Query= TCONS_00001434

Length=673
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400342 pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase...  361     2e-118


>CDD:400342 pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127. 
 One member of this family, from Bidobacterium longicum, UniProtKB:E8MGH8, 
has been characterized as an unusual beta-L-arabinofuranosidase 
enzyme, EC:3.2.1.185. It rleases l-arabinose 
from the l-arabinofuranose (Araf)-beta1,2-Araf disaccharide 
and also transglycosylates 1-alkanols with retention of 
the anomeric configuration. Terminal beta-l-arabinofuranosyl 
residues have been found in arabinogalactan proteins from 
a mumber of different plantt species. beta-l-Arabinofuranosyl 
linkages with 1-4 arabinofuranosides are also found in the 
sugar chains of extensin and solanaceous lectins, hydroxyproline 
(Hyp)2-rich glycoproteins that are widely observed in 
plant cell wall fractions. The critical residue for catalytic 
activity is Glu-338, in a ET/SCAS sequence context.
Length=503

 Score = 361 bits (929),  Expect = 2e-118, Method: Composition-based stats.
 Identities = 162/567 (29%), Positives = 228/567 (40%), Gaps = 83/567 (15%)

Query  23   DSFWAQRRQVVRSQTLRHQLQMLKDTGRYDAFKLKWHPSYSDPCTVWPVPNHLFWDSDVA  82
            DSF+  R+Q  R   L      L  T R +A      PS +     W  P   F   D+ 
Sbjct  6    DSFFGDRQQTNREYLLPLDPDRLLHTFRKEAGL----PSKAIAYGGWEHPGFPFRGHDLG  61

Query  83   KWIEGACYFLMDYPDEEIDAAIRELVEMIQNAQQSDGYLNIHYTVVE-----PGKRFTNL  137
             W+    Y L    D E++A +  LV+ +  AQQ DGYL  +              +   
Sbjct  62   HWLSAVAYMLASTGDPELEARLDRLVDELAEAQQGDGYLGTYPESNFDRNEAGKGVWAP-  120

Query  138  RDMHELYNAGHLVEAALAHRLLYRNDDLLSPILK---YVALLAATFGNKEGQKAGYPGHP  194
               HELYN G L+   + +  L      L    +   ++  +    G+++GQ+   P H 
Sbjct  121  --NHELYNLGKLIAGLVDYYQLTGKTQALDVATRLADWLYDVTDVLGDEQGQRVLVPEHG  178

Query  195  EIELALLRLYKVTQDPEHLRLARFFLEERGNPSGGKERRHYYDVEAEVRGERKHEVPEAY  254
             I  AL+ LY++T D  +L LA+ F+  RG            D                 
Sbjct  179  GINEALVELYELTGDKRYLDLAKRFIHNRG-----------LDP----------------  211

Query  255  PAARSYWYQQAHVPIAQQQTIEGHAVRAMYLLTSVADLVRICEPSSDVANKFVPALHRLW  314
                   Y Q  +P   Q T  GHAVR        AD+       + +      A    W
Sbjct  212  -----LAYGQDELPGRHQNTAIGHAVRGA------ADVYEETGDDALLK-----AAEFFW  255

Query  315  SNMIEKKSYVTGGIGAMKQWEGFGIDYFLPHGTDEGGCYAETCAAIGVMMLAERLLKVEL  374
             N++    YVTGG GA  + E FG  Y LP+       Y ETCA+  ++ L  RL     
Sbjct  256  DNVVTHHMYVTGGNGA--RHEHFGPPYELPNRLA----YCETCASYNMLKLTRRLFCWTP  309

Query  375  HSHYADILELCLYNAVLTGMSLDGKGFTYVNQLASSETDLSRRYEWFECACCPPNVTRTL  434
             + YAD  E  LYN +L G S DG  F Y N L S       R+ W    CCP N   T 
Sbjct  310  DAKYADYYERALYNHILAGQSPDGGMFFYFNPLESGSY--RLRWPWDSFWCCPGNGAETH  367

Query  435  GCLGGYLWSYKVNNETQKATVNVHLYTSATLRFEVADSRIEITQKTQWPWNGDVTFSVNI  494
               G Y+++           + V+LY  +T  +++    +E+ Q+T +PW G V  +VN 
Sbjct  368  AKFGDYIYA------HSDDGIYVNLYIPSTADWKLKG--VELEQETDYPWEGKVRLTVNT  419

Query  495  DGPPVNLELRLRIPGWASTWEVT----PQPSQPDLHDGYLYLSSDWIQQHAEFSFSCPMR  550
                 +  L LRIPGWA+   +T    P    P   DGYL +  +W +         PM 
Sbjct  420  A-KKADFTLYLRIPGWAAGATLTVNGKPTVVAP-KSDGYLSIEREW-KDGDRVELELPMP  476

Query  551  PRVVRPHPLTMQPVAYVT--RGPIVYC  575
             R+   HPL       V   RGP+V  
Sbjct  477  VRLEAAHPLVPDDPNKVAVLRGPLVLA  503



Lambda      K        H        a         alpha
   0.320    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 855378200


Query= TCONS_00001435

Length=662
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400342 pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase...  360     3e-118


>CDD:400342 pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127. 
 One member of this family, from Bidobacterium longicum, UniProtKB:E8MGH8, 
has been characterized as an unusual beta-L-arabinofuranosidase 
enzyme, EC:3.2.1.185. It rleases l-arabinose 
from the l-arabinofuranose (Araf)-beta1,2-Araf disaccharide 
and also transglycosylates 1-alkanols with retention of 
the anomeric configuration. Terminal beta-l-arabinofuranosyl 
residues have been found in arabinogalactan proteins from 
a mumber of different plantt species. beta-l-Arabinofuranosyl 
linkages with 1-4 arabinofuranosides are also found in the 
sugar chains of extensin and solanaceous lectins, hydroxyproline 
(Hyp)2-rich glycoproteins that are widely observed in 
plant cell wall fractions. The critical residue for catalytic 
activity is Glu-338, in a ET/SCAS sequence context.
Length=503

 Score = 360 bits (927),  Expect = 3e-118, Method: Composition-based stats.
 Identities = 162/567 (29%), Positives = 228/567 (40%), Gaps = 83/567 (15%)

Query  23   DSFWAQRRQVVRSQTLRHQLQMLKDTGRYDAFKLKWHPSYSDPCTVWPVPNHLFWDSDVA  82
            DSF+  R+Q  R   L      L  T R +A      PS +     W  P   F   D+ 
Sbjct  6    DSFFGDRQQTNREYLLPLDPDRLLHTFRKEAGL----PSKAIAYGGWEHPGFPFRGHDLG  61

Query  83   KWIEGACYFLMDYPDEEIDAAIRELVEMIQNAQQSDGYLNIHYTVVE-----PGKRFTNL  137
             W+    Y L    D E++A +  LV+ +  AQQ DGYL  +              +   
Sbjct  62   HWLSAVAYMLASTGDPELEARLDRLVDELAEAQQGDGYLGTYPESNFDRNEAGKGVWAP-  120

Query  138  RDMHELYNAGHLVEAALAHRLLYRNDDLLSPILK---YVALLAATFGNKEGQKAGYPGHP  194
               HELYN G L+   + +  L      L    +   ++  +    G+++GQ+   P H 
Sbjct  121  --NHELYNLGKLIAGLVDYYQLTGKTQALDVATRLADWLYDVTDVLGDEQGQRVLVPEHG  178

Query  195  EIELALLRLYKVTQDPEHLRLARFFLEERGNPSGGKERRHYYDVEAEVRGERKHEVPEAY  254
             I  AL+ LY++T D  +L LA+ F+  RG            D                 
Sbjct  179  GINEALVELYELTGDKRYLDLAKRFIHNRG-----------LDP----------------  211

Query  255  PAARSYWYQQAHVPIAQQQTIEGHAVRAMYLLTSVADLVRICEPSSDVANKFVPALHRLW  314
                   Y Q  +P   Q T  GHAVR        AD+       + +      A    W
Sbjct  212  -----LAYGQDELPGRHQNTAIGHAVRGA------ADVYEETGDDALLK-----AAEFFW  255

Query  315  SNMIEKKSYVTGGIGAMKQWEGFGIDYFLPHGTDEGGCYAETCAAIGVMMLAERLLKVEL  374
             N++    YVTGG GA  + E FG  Y LP+       Y ETCA+  ++ L  RL     
Sbjct  256  DNVVTHHMYVTGGNGA--RHEHFGPPYELPNRLA----YCETCASYNMLKLTRRLFCWTP  309

Query  375  HSHYADILELCLYNAVLTGMSLDGKGFTYVNQLASSETDLSRRYEWFECACCPPNVTRTL  434
             + YAD  E  LYN +L G S DG  F Y N L S       R+ W    CCP N   T 
Sbjct  310  DAKYADYYERALYNHILAGQSPDGGMFFYFNPLESGSY--RLRWPWDSFWCCPGNGAETH  367

Query  435  GCLGGYLWSYKVNNETQKATVNVHLYTSATLRFEVADSRIEITQKTQWPWNGDVTFSVNI  494
               G Y+++           + V+LY  +T  +++    +E+ Q+T +PW G V  +VN 
Sbjct  368  AKFGDYIYA------HSDDGIYVNLYIPSTADWKLKG--VELEQETDYPWEGKVRLTVNT  419

Query  495  DGPPVNLELRLRIPGWASTWEVT----PQPSQPDLHDGYLYLSSDWIQQHAEFSFSCPMR  550
                 +  L LRIPGWA+   +T    P    P   DGYL +  +W +         PM 
Sbjct  420  A-KKADFTLYLRIPGWAAGATLTVNGKPTVVAP-KSDGYLSIEREW-KDGDRVELELPMP  476

Query  551  PRVVRPHPLTMQPVAYVT--RGPIVYC  575
             R+   HPL       V   RGP+V  
Sbjct  477  VRLEAAHPLVPDDPNKVAVLRGPLVLA  503



Lambda      K        H        a         alpha
   0.320    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 839155510


Query= TCONS_00001436

Length=152
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400342 pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase...  125     3e-35


>CDD:400342 pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127. 
 One member of this family, from Bidobacterium longicum, UniProtKB:E8MGH8, 
has been characterized as an unusual beta-L-arabinofuranosidase 
enzyme, EC:3.2.1.185. It rleases l-arabinose 
from the l-arabinofuranose (Araf)-beta1,2-Araf disaccharide 
and also transglycosylates 1-alkanols with retention of 
the anomeric configuration. Terminal beta-l-arabinofuranosyl 
residues have been found in arabinogalactan proteins from 
a mumber of different plantt species. beta-l-Arabinofuranosyl 
linkages with 1-4 arabinofuranosides are also found in the 
sugar chains of extensin and solanaceous lectins, hydroxyproline 
(Hyp)2-rich glycoproteins that are widely observed in 
plant cell wall fractions. The critical residue for catalytic 
activity is Glu-338, in a ET/SCAS sequence context.
Length=503

 Score = 125 bits (316),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 47/140 (34%), Positives = 67/140 (48%), Gaps = 11/140 (8%)

Query  12   YADILELCLYNAVLTGMSLDGKGFTYVNQLASSETDLSRRYEWFECACCPPNVTRTLGCL  71
            YAD  E  LYN +L G S DG  F Y N L S       R+ W    CCP N   T    
Sbjct  313  YADYYERALYNHILAGQSPDGGMFFYFNPLESGSY--RLRWPWDSFWCCPGNGAETHAKF  370

Query  72   GGYLWSYKVNNETQKATVNVHLYTSATLRFEVADSRIEITQKTQWPWNGDVTFSVNIDGP  131
            G Y+++           + V+LY  +T  +++    +E+ Q+T +PW G V  +VN    
Sbjct  371  GDYIYA------HSDDGIYVNLYIPSTADWKLKG--VELEQETDYPWEGKVRLTVNTA-K  421

Query  132  PVNLELRLRIPGWASTWEVS  151
              +  L LRIPGWA+   ++
Sbjct  422  KADFTLYLRIPGWAAGATLT  441



Lambda      K        H        a         alpha
   0.319    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00001437

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase          159     3e-46


>CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase.  
Length=404

 Score = 159 bits (405),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 56/170 (33%), Positives = 88/170 (52%), Gaps = 10/170 (6%)

Query  1    MYDVRLRDTYPSCGMNWPTDLVDVKPYLQRPDVVQALNINPEKKSGWEECSGAVSSTFNA  60
             Y++    +  +CG   P D    + YL RP+V +AL++N      WEEC+  V   +  
Sbjct  243  PYNIYTPCSTDTCGGYDPYDTSYAEKYLNRPEVRKALHVNDSVGK-WEECNDDVF-NWLY  300

Query  61   ANSLPSV-QLLPELLESGIPILLFSGDKDLICNHVGTEQLINNMKWNGGTGFETSPGVWA  119
             + + S+  ++P LLE G+ +L++SGD DLICN++GTE  I  + W+G          + 
Sbjct  301  DDIMKSMIPIVPNLLEGGLRVLIYSGDVDLICNYLGTEAWIKALNWSGKDD-------FR  353

Query  120  PRHDWTFEGEPAGIYQYARNLTYVLFYNASHMVPYDLPRQSRDMLDRFMK  169
            P      +G+ AG  +   NLT+     A HMVP D P ++  M  RF+ 
Sbjct  354  PWMVSPVDGQVAGYVKTYGNLTFATVKGAGHMVPEDQPEEALQMFQRFIS  403



Lambda      K        H        a         alpha
   0.314    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00001438

Length=460


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00007167

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase          159     3e-46


>CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase.  
Length=404

 Score = 159 bits (405),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 56/170 (33%), Positives = 88/170 (52%), Gaps = 10/170 (6%)

Query  1    MYDVRLRDTYPSCGMNWPTDLVDVKPYLQRPDVVQALNINPEKKSGWEECSGAVSSTFNA  60
             Y++    +  +CG   P D    + YL RP+V +AL++N      WEEC+  V   +  
Sbjct  243  PYNIYTPCSTDTCGGYDPYDTSYAEKYLNRPEVRKALHVNDSVGK-WEECNDDVF-NWLY  300

Query  61   ANSLPSV-QLLPELLESGIPILLFSGDKDLICNHVGTEQLINNMKWNGGTGFETSPGVWA  119
             + + S+  ++P LLE G+ +L++SGD DLICN++GTE  I  + W+G          + 
Sbjct  301  DDIMKSMIPIVPNLLEGGLRVLIYSGDVDLICNYLGTEAWIKALNWSGKDD-------FR  353

Query  120  PRHDWTFEGEPAGIYQYARNLTYVLFYNASHMVPYDLPRQSRDMLDRFMK  169
            P      +G+ AG  +   NLT+     A HMVP D P ++  M  RF+ 
Sbjct  354  PWMVSPVDGQVAGYVKTYGNLTFATVKGAGHMVPEDQPEEALQMFQRFIS  403



Lambda      K        H        a         alpha
   0.314    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00001439

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase          159     3e-46


>CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase.  
Length=404

 Score = 159 bits (405),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 56/170 (33%), Positives = 88/170 (52%), Gaps = 10/170 (6%)

Query  1    MYDVRLRDTYPSCGMNWPTDLVDVKPYLQRPDVVQALNINPEKKSGWEECSGAVSSTFNA  60
             Y++    +  +CG   P D    + YL RP+V +AL++N      WEEC+  V   +  
Sbjct  243  PYNIYTPCSTDTCGGYDPYDTSYAEKYLNRPEVRKALHVNDSVGK-WEECNDDVF-NWLY  300

Query  61   ANSLPSV-QLLPELLESGIPILLFSGDKDLICNHVGTEQLINNMKWNGGTGFETSPGVWA  119
             + + S+  ++P LLE G+ +L++SGD DLICN++GTE  I  + W+G          + 
Sbjct  301  DDIMKSMIPIVPNLLEGGLRVLIYSGDVDLICNYLGTEAWIKALNWSGKDD-------FR  353

Query  120  PRHDWTFEGEPAGIYQYARNLTYVLFYNASHMVPYDLPRQSRDMLDRFMK  169
            P      +G+ AG  +   NLT+     A HMVP D P ++  M  RF+ 
Sbjct  354  PWMVSPVDGQVAGYVKTYGNLTFATVKGAGHMVPEDQPEEALQMFQRFIS  403



Lambda      K        H        a         alpha
   0.314    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00001440

Length=59
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398375 pfam04667, Endosulfine, cAMP-regulated phosphoprotein/...  80.8    5e-23


>CDD:398375 pfam04667, Endosulfine, cAMP-regulated phosphoprotein/endosulfine 
conserved region.  Conserved region found in both cAMP-regulated 
phosphoprotein 19 (ARPP-19) and Alpha/Beta endosulfine. 
No function has yet been assigned to ARPP-19. Endosulfine 
is the endogenous ligand for the ATP-dependent potassium 
(K ATP) channels which occupy a key position in the control 
of insulin release from the pancreatic beta cell by coupling 
cell polarity to metabolism. In both cases the region occupies 
the majority of the protein.
Length=80

 Score = 80.8 bits (200),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 35/50 (70%), Positives = 40/50 (80%), Gaps = 0/50 (0%)

Query  10  DTSSLSPDEQRLLRLYGKMPTKKDLLQNKLKERKYFDSGDYALSKAGKAS  59
           D SSLSP+E +L + YGK+P KKDLL  KL+ERKYFDSGDYALSKAG   
Sbjct  1   DLSSLSPEELKLYKKYGKLPKKKDLLSKKLQERKYFDSGDYALSKAGVKK  50



Lambda      K        H        a         alpha
   0.309    0.127    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00001441

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429989 pfam08426, ICE2, ICE2. ICE2 is a fungal ER protein whi...  360     3e-125


>CDD:429989 pfam08426, ICE2, ICE2.  ICE2 is a fungal ER protein which has 
been shown to play an important role in forming/maintaining 
the cortical ER. It has also bee identified as a protein which 
is necessary for nuclear inner membrane targeting.
Length=402

 Score = 360 bits (927),  Expect = 3e-125, Method: Composition-based stats.
 Identities = 146/259 (56%), Positives = 180/259 (69%), Gaps = 17/259 (7%)

Query  8    QIALLVLSASIISSSVYFLWRVLQFPEISNVDAALIGVSITCAVILCAWGIGSGRGNPVE  67
             I LLVLS S+I+SS+YFL+R+  FPEISNVDA+LIGV++T AV L A+GI SGRG+ +E
Sbjct  153  MIVLLVLSGSVITSSLYFLYRIYVFPEISNVDASLIGVTLTLAVFLGAYGIVSGRGSVIE  212

Query  68   SSLLFAYVVLCIYQIFTDYQPSFPVEQGS-----SPSQTGDFPPLPPIIMASYSTLMHAL  122
            SSLLFAY+V CIY+IF D  PS   E          +   +FPPLPPIIMASYSTL+  L
Sbjct  213  SSLLFAYIVRCIYEIFPDLAPSATDEILDLFKETWQNHQPEFPPLPPIIMASYSTLLKFL  272

Query  123  SS-LPSIIHAAFNVITAVFSAVTPSVLISLAYRIFVLYASTRIIPAVRESGARALSQEAS  181
            SS LPS IH+ F  + A F  +TPSVLISLAYRI V YA+TRIIPA+RESGARALS E S
Sbjct  273  SSNLPSSIHSIFEFLKAAFQTITPSVLISLAYRILVFYAATRIIPALRESGARALS-EPS  331

Query  182  LDDTDAAGQFLGFLSYFSPSILIAVYTSLLMQHFATTSQAMG--GSGQWWSIQGGGGGNL  239
            LDD+D + + +G L ++SP ILIAVYT LL+Q+F      +   G    W+         
Sbjct  332  LDDSDPSSRIMGLLYWYSPCILIAVYTHLLLQYFGELKNELCLWGCVDSWTF--------  383

Query  240  WRWVNLACTLALYAVELWL  258
            W WVN+  T+ LYAVEL+ 
Sbjct  384  WNWVNVFTTMLLYAVELYG  402



Lambda      K        H        a         alpha
   0.322    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00007168

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.311    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00001442

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.311    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00001444

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401322 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M)....  563     0.0  
CDD:437135 pfam19303, Anticodon_3, Anticodon binding domain of me...  61.4    1e-11


>CDD:401322 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M).  This 
family includes methionyl tRNA synthetases.
Length=387

 Score = 563 bits (1454),  Expect = 0.0, Method: Composition-based stats.
 Identities = 193/395 (49%), Positives = 252/395 (64%), Gaps = 11/395 (3%)

Query  16   ILVTSALPYVNNVPHLGNIVGSVLSADVFARYHKACGRQTLYICGTDEYGTATETKALEE  75
            ILVT+ALPY N  PHLG++  S + AD+FARY +  G   L++CGTDE+GT  E KA +E
Sbjct  1    ILVTTALPYANGPPHLGHLY-SYIPADIFARYLRLRGYDVLFVCGTDEHGTPIELKAEKE  59

Query  76   KVTPEELCAKYNKIHQEVYEWFEIGFDHFGRTPTQQHTEISQAIFKRLYDNGYLTEKTAE  135
             +TPEEL  +Y++IH+E ++ F I FD +GRT +++H E+ Q  F +LY+NGY+ EK  E
Sbjct  60   GITPEELVDRYHEIHREDFKKFNISFDDYGRTTSERHHELVQEFFLKLYENGYIYEKEIE  119

Query  136  QPFCEAHGSFLADRYVEGECPRCHYEDARGDQCDKCGHLLDPFDLIKPRCKLDGATPVRR  195
            Q +C +   FL DRYVEG CP C  EDARGDQC+ CG  L+P +LI P+C + G TP  +
Sbjct  120  QFYCPSDERFLPDRYVEGTCPHCGSEDARGDQCENCGRHLEPTELINPKCVICGTTPEVK  179

Query  196  STKHIHLLLDKLQPEIENWVLPAMEKGNWPKNSRDITKAWLKEGLKDRGITRDLKWGVPV  255
             T+H    L K Q ++  W+        WP+N +++   WLKEGLKDR I+RDL WG+PV
Sbjct  180  ETEHYFFDLSKFQDKLREWI--EENNPEWPENVKNMVLEWLKEGLKDRAISRDLDWGIPV  237

Query  256  PLPGFENKVLYVWFEACIGYPSITANYTA---DWEKWWRNPEEVELYQFLGKDNVPFHSV  312
              PG E KV YVW +A IGY S T   +     W++WW N  + EL  F+GKD + FH++
Sbjct  238  --PGAEGKVFYVWLDAPIGYISATKELSGNEEKWKEWWPNDPDTELVHFIGKDIIYFHTI  295

Query  313  IFPGCELGTKDKWTMLHHLSTTEYLNYEGGKFSKSRGVGVFGNNARQTGVPPDVWRYYLL  372
             +P   LG    + +   +    YL YEGGK SKSRG  V+ + A     PPD  RYYL 
Sbjct  296  FWPAMLLGA--GYRLPTTVFAHGYLTYEGGKMSKSRGNVVWPSEALDR-FPPDALRYYLA  352

Query  373  KNRPETGDTQFEWRSFVECNNSELLAKLGNLVNRV  407
            +NRPET DT F W  FVE  NSEL   LGNLVNRV
Sbjct  353  RNRPETKDTDFSWEDFVERVNSELADDLGNLVNRV  387


>CDD:437135 pfam19303, Anticodon_3, Anticodon binding domain of methionyl 
tRNA ligase.  This domain is found in methionyl tRNA ligase. 
The domain binds to the anticodon of the tRNA ligase.
Length=152

 Score = 61.4 bits (150),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 41/152 (27%), Positives = 71/152 (47%), Gaps = 25/152 (16%)

Query  433  DEITSLLRQYIEEMEGVHLRPGINTAMR-LAEAGNGFIQANRLDNA----LIANEPDRAA  487
             ++T+ L  Y   ME + +R      +R +  AGN ++Q      A        +P+ AA
Sbjct  16   ADLTTRLAAYEGHMEAMEVRKAA-AELRAIWVAGNEYLQE-----AAPWTTFKTDPEAAA  69

Query  488  AVVGTVINLIHLLSSVFAPYLPATSKSILEQLNA-----PFGVIPSLDELKDGWKPVALK  542
            A V   +NLI L + + AP++P  + ++L  +       P  V  +L          AL 
Sbjct  70   AQVRLALNLIRLYAVLSAPFIPDAAAAMLAAMGTDDAAWPDDVAAALT---------ALP  120

Query  543  GGHKIGKAKYLFSRIDPKKADEWRELFGGSQA  574
             GH     + LF++I  ++ +EW+E F G++A
Sbjct  121  AGHAFTVPEVLFAKITDEQREEWQERFAGTRA  152



Lambda      K        H        a         alpha
   0.316    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 822932820


Query= TCONS_00007169

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401322 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M)....  264     3e-85
CDD:437135 pfam19303, Anticodon_3, Anticodon binding domain of me...  60.2    1e-11


>CDD:401322 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M).  This 
family includes methionyl tRNA synthetases.
Length=387

 Score = 264 bits (676),  Expect = 3e-85, Method: Composition-based stats.
 Identities = 94/188 (50%), Positives = 116/188 (62%), Gaps = 8/188 (4%)

Query  5    NWPKNSRDITKAWLKEGLKDRGITRDLKWGVPVPLPGFENKVLYVWFEACIGYPSITANY  64
             WP+N +++   WLKEGLKDR I+RDL WG+PVP  G E KV YVW +A IGY S T   
Sbjct  205  EWPENVKNMVLEWLKEGLKDRAISRDLDWGIPVP--GAEGKVFYVWLDAPIGYISATKEL  262

Query  65   TA---DWEKWWRNPEEVELYQFLGKDNVPFHSVIFPGCELGTKDKWTMLHHLSTTEYLNY  121
            +     W++WW N  + EL  F+GKD + FH++ +P   LG    + +   +    YL Y
Sbjct  263  SGNEEKWKEWWPNDPDTELVHFIGKDIIYFHTIFWPAMLLGAG--YRLPTTVFAHGYLTY  320

Query  122  EGGKFSKSRGVGVFGNNARQTGVPPDVWRYYLLKNRPETGDTQFEWRSFVECNNSELLAK  181
            EGGK SKSRG  V+ + A     PPD  RYYL +NRPET DT F W  FVE  NSEL   
Sbjct  321  EGGKMSKSRGNVVWPSEALDR-FPPDALRYYLARNRPETKDTDFSWEDFVERVNSELADD  379

Query  182  LGNLVNRV  189
            LGNLVNRV
Sbjct  380  LGNLVNRV  387


>CDD:437135 pfam19303, Anticodon_3, Anticodon binding domain of methionyl 
tRNA ligase.  This domain is found in methionyl tRNA ligase. 
The domain binds to the anticodon of the tRNA ligase.
Length=152

 Score = 60.2 bits (147),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 41/152 (27%), Positives = 71/152 (47%), Gaps = 25/152 (16%)

Query  215  DEITSLLRQYIEEMEGVHLRPGINTAMR-LAEAGNGFIQANRLDNA----LIANEPDRAA  269
             ++T+ L  Y   ME + +R      +R +  AGN ++Q      A        +P+ AA
Sbjct  16   ADLTTRLAAYEGHMEAMEVRKAA-AELRAIWVAGNEYLQE-----AAPWTTFKTDPEAAA  69

Query  270  AVVGTVINLIHLLSSVFAPYLPATSKSILEQLNA-----PFGVIPSLDELKDGWKPVALK  324
            A V   +NLI L + + AP++P  + ++L  +       P  V  +L          AL 
Sbjct  70   AQVRLALNLIRLYAVLSAPFIPDAAAAMLAAMGTDDAAWPDDVAAALT---------ALP  120

Query  325  GGHKIGKAKYLFSRIDPKKADEWRELFGGSQA  356
             GH     + LF++I  ++ +EW+E F G++A
Sbjct  121  AGHAFTVPEVLFAKITDEQREEWQERFAGTRA  152



Lambda      K        H        a         alpha
   0.314    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00007170

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461014 pfam03690, UPF0160, Uncharacterized protein family (UP...  340     1e-118


>CDD:461014 pfam03690, UPF0160, Uncharacterized protein family (UPF0160). 
 This family of proteins contains a large number of metal binding 
residues. The patterns are suggestive of a phosphoesterase 
function. The conserved DHH motif may mean this family 
is related to pfam01368.
Length=315

 Score = 340 bits (874),  Expect = 1e-118, Method: Composition-based stats.
 Identities = 128/262 (49%), Positives = 162/262 (62%), Gaps = 33/262 (13%)

Query  1    MHFGRAIIAQHTSLPLDHEDVTLLYEKLYTDFIEAVDANDNGVSVYDPAALASANIEKRF  60
             HFG+ IIA+   LP+D EDV LLY+K+Y  FIEA+DA DNG+S YD         E R+
Sbjct  87   KHFGKEIIAKL--LPVDDEDVELLYDKVYESFIEAIDAIDNGISQYDT-------GEPRY  137

Query  61   RDGGITIASVVNDMNNPDPTCPPGEPQDEDSLFNRASTFMGHVFTRKLHHAFTSWLPARA  120
            +    T++S V  +N           +DED  F +AS  +G  F  ++ +   SWLPAR 
Sbjct  138  KINT-TLSSRVGRLNPNWNE--DETDEDEDERFEKASELVGEEFLDRVKYYAKSWLPARD  194

Query  121  TVGAAYQSRREVHPSGRIIILPQGGVPWKEHLYNFEKEASGAGDINPDEQVYYVLYPESA  180
             V  A ++R EV PSGRI++L Q   PWKEHLY  EKE +  G      Q+ YVLYP+S 
Sbjct  195  IVEEALENRFEVDPSGRILVLDQ-FCPWKEHLYELEKELNIEG------QILYVLYPDS-  246

Query  181  TEGSKWRVQCVSVNEGSFESRKPLPESWRGVRDADLDGCLAAEAEKSGKPKIPEGAVFVH  240
                KWRVQ V V+ GSFESRKPLPE+WRG+RD +L        E SG   IP G +FVH
Sbjct  247  --SGKWRVQAVPVSPGSFESRKPLPEAWRGLRDEELS-------EVSG---IP-GCIFVH  293

Query  241  ASGFIGGHKTKEGAFAMAVRSL  262
            ASGFIGG+KT+EGA AMA ++L
Sbjct  294  ASGFIGGNKTREGALAMARKAL  315



Lambda      K        H        a         alpha
   0.316    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00001446

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401322 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M)....  563     0.0  
CDD:437135 pfam19303, Anticodon_3, Anticodon binding domain of me...  61.4    1e-11


>CDD:401322 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M).  This 
family includes methionyl tRNA synthetases.
Length=387

 Score = 563 bits (1454),  Expect = 0.0, Method: Composition-based stats.
 Identities = 193/395 (49%), Positives = 252/395 (64%), Gaps = 11/395 (3%)

Query  16   ILVTSALPYVNNVPHLGNIVGSVLSADVFARYHKACGRQTLYICGTDEYGTATETKALEE  75
            ILVT+ALPY N  PHLG++  S + AD+FARY +  G   L++CGTDE+GT  E KA +E
Sbjct  1    ILVTTALPYANGPPHLGHLY-SYIPADIFARYLRLRGYDVLFVCGTDEHGTPIELKAEKE  59

Query  76   KVTPEELCAKYNKIHQEVYEWFEIGFDHFGRTPTQQHTEISQAIFKRLYDNGYLTEKTAE  135
             +TPEEL  +Y++IH+E ++ F I FD +GRT +++H E+ Q  F +LY+NGY+ EK  E
Sbjct  60   GITPEELVDRYHEIHREDFKKFNISFDDYGRTTSERHHELVQEFFLKLYENGYIYEKEIE  119

Query  136  QPFCEAHGSFLADRYVEGECPRCHYEDARGDQCDKCGHLLDPFDLIKPRCKLDGATPVRR  195
            Q +C +   FL DRYVEG CP C  EDARGDQC+ CG  L+P +LI P+C + G TP  +
Sbjct  120  QFYCPSDERFLPDRYVEGTCPHCGSEDARGDQCENCGRHLEPTELINPKCVICGTTPEVK  179

Query  196  STKHIHLLLDKLQPEIENWVLPAMEKGNWPKNSRDITKAWLKEGLKDRGITRDLKWGVPV  255
             T+H    L K Q ++  W+        WP+N +++   WLKEGLKDR I+RDL WG+PV
Sbjct  180  ETEHYFFDLSKFQDKLREWI--EENNPEWPENVKNMVLEWLKEGLKDRAISRDLDWGIPV  237

Query  256  PLPGFENKVLYVWFEACIGYPSITANYTA---DWEKWWRNPEEVELYQFLGKDNVPFHSV  312
              PG E KV YVW +A IGY S T   +     W++WW N  + EL  F+GKD + FH++
Sbjct  238  --PGAEGKVFYVWLDAPIGYISATKELSGNEEKWKEWWPNDPDTELVHFIGKDIIYFHTI  295

Query  313  IFPGCELGTKDKWTMLHHLSTTEYLNYEGGKFSKSRGVGVFGNNARQTGVPPDVWRYYLL  372
             +P   LG    + +   +    YL YEGGK SKSRG  V+ + A     PPD  RYYL 
Sbjct  296  FWPAMLLGA--GYRLPTTVFAHGYLTYEGGKMSKSRGNVVWPSEALDR-FPPDALRYYLA  352

Query  373  KNRPETGDTQFEWRSFVECNNSELLAKLGNLVNRV  407
            +NRPET DT F W  FVE  NSEL   LGNLVNRV
Sbjct  353  RNRPETKDTDFSWEDFVERVNSELADDLGNLVNRV  387


>CDD:437135 pfam19303, Anticodon_3, Anticodon binding domain of methionyl 
tRNA ligase.  This domain is found in methionyl tRNA ligase. 
The domain binds to the anticodon of the tRNA ligase.
Length=152

 Score = 61.4 bits (150),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 41/152 (27%), Positives = 71/152 (47%), Gaps = 25/152 (16%)

Query  433  DEITSLLRQYIEEMEGVHLRPGINTAMR-LAEAGNGFIQANRLDNA----LIANEPDRAA  487
             ++T+ L  Y   ME + +R      +R +  AGN ++Q      A        +P+ AA
Sbjct  16   ADLTTRLAAYEGHMEAMEVRKAA-AELRAIWVAGNEYLQE-----AAPWTTFKTDPEAAA  69

Query  488  AVVGTVINLIHLLSSVFAPYLPATSKSILEQLNA-----PFGVIPSLDELKDGWKPVALK  542
            A V   +NLI L + + AP++P  + ++L  +       P  V  +L          AL 
Sbjct  70   AQVRLALNLIRLYAVLSAPFIPDAAAAMLAAMGTDDAAWPDDVAAALT---------ALP  120

Query  543  GGHKIGKAKYLFSRIDPKKADEWRELFGGSQA  574
             GH     + LF++I  ++ +EW+E F G++A
Sbjct  121  AGHAFTVPEVLFAKITDEQREEWQERFAGTRA  152



Lambda      K        H        a         alpha
   0.316    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 822932820


Query= TCONS_00001447

Length=260


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00007171

Length=363


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0593    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00001448

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00001449

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase. The S...  130     5e-40


>CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase.  The S. cerevisiae 
phospholipid methyltransferase (EC:2.1.1.16) has a broad 
substrate specificity of unsaturated phospholipids.
Length=105

 Score = 130 bits (329),  Expect = 5e-40, Method: Composition-based stats.
 Identities = 57/102 (56%), Positives = 70/102 (69%), Gaps = 1/102 (1%)

Query  88   ILGSVLFGIGSILVLSSMYALGVTGTYLGDYFGILMDAPVTGFPFNVTGSPMYWGSTLNF  147
            ILG +L  +G  LVLSS  ALG+ GT+ GD+FGILMD  VTG P+    +PMY G TL F
Sbjct  4    ILGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGTLGF  63

Query  148  LGVALYFGRVAGLLLTAEVFVVYWIALQ-WEDPFTAEIYAKR  188
            LG+AL  G  AGLLL   V +VY+IAL+  E+P  A+IY KR
Sbjct  64   LGLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIYGKR  105



Lambda      K        H        a         alpha
   0.328    0.145    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00001450

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase. The S...  130     5e-40


>CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase.  The S. cerevisiae 
phospholipid methyltransferase (EC:2.1.1.16) has a broad 
substrate specificity of unsaturated phospholipids.
Length=105

 Score = 130 bits (329),  Expect = 5e-40, Method: Composition-based stats.
 Identities = 57/102 (56%), Positives = 70/102 (69%), Gaps = 1/102 (1%)

Query  88   ILGSVLFGIGSILVLSSMYALGVTGTYLGDYFGILMDAPVTGFPFNVTGSPMYWGSTLNF  147
            ILG +L  +G  LVLSS  ALG+ GT+ GD+FGILMD  VTG P+    +PMY G TL F
Sbjct  4    ILGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGTLGF  63

Query  148  LGVALYFGRVAGLLLTAEVFVVYWIALQ-WEDPFTAEIYAKR  188
            LG+AL  G  AGLLL   V +VY+IAL+  E+P  A+IY KR
Sbjct  64   LGLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIYGKR  105



Lambda      K        H        a         alpha
   0.328    0.145    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00007172

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase. The S...  129     1e-39


>CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase.  The S. cerevisiae 
phospholipid methyltransferase (EC:2.1.1.16) has a broad 
substrate specificity of unsaturated phospholipids.
Length=105

 Score = 129 bits (327),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 57/102 (56%), Positives = 70/102 (69%), Gaps = 1/102 (1%)

Query  88   ILGSVLFGIGSILVLSSMYALGVTGTYLGDYFGILMDAPVTGFPFNVTGSPMYWGSTLNF  147
            ILG +L  +G  LVLSS  ALG+ GT+ GD+FGILMD  VTG P+    +PMY G TL F
Sbjct  4    ILGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGTLGF  63

Query  148  LGVALYFGRVAGLLLTAEVFVVYWIALQ-WEDPFTAEIYAKR  188
            LG+AL  G  AGLLL   V +VY+IAL+  E+P  A+IY KR
Sbjct  64   LGLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIYGKR  105



Lambda      K        H        a         alpha
   0.329    0.146    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00001451

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase. The S...  130     5e-40


>CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase.  The S. cerevisiae 
phospholipid methyltransferase (EC:2.1.1.16) has a broad 
substrate specificity of unsaturated phospholipids.
Length=105

 Score = 130 bits (329),  Expect = 5e-40, Method: Composition-based stats.
 Identities = 57/102 (56%), Positives = 70/102 (69%), Gaps = 1/102 (1%)

Query  88   ILGSVLFGIGSILVLSSMYALGVTGTYLGDYFGILMDAPVTGFPFNVTGSPMYWGSTLNF  147
            ILG +L  +G  LVLSS  ALG+ GT+ GD+FGILMD  VTG P+    +PMY G TL F
Sbjct  4    ILGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGTLGF  63

Query  148  LGVALYFGRVAGLLLTAEVFVVYWIALQ-WEDPFTAEIYAKR  188
            LG+AL  G  AGLLL   V +VY+IAL+  E+P  A+IY KR
Sbjct  64   LGLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIYGKR  105



Lambda      K        H        a         alpha
   0.328    0.145    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00001452

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase. The S...  129     7e-40


>CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase.  The S. cerevisiae 
phospholipid methyltransferase (EC:2.1.1.16) has a broad 
substrate specificity of unsaturated phospholipids.
Length=105

 Score = 129 bits (328),  Expect = 7e-40, Method: Composition-based stats.
 Identities = 57/102 (56%), Positives = 70/102 (69%), Gaps = 1/102 (1%)

Query  88   ILGSVLFGIGSILVLSSMYALGVTGTYLGDYFGILMDAPVTGFPFNVTGSPMYWGSTLNF  147
            ILG +L  +G  LVLSS  ALG+ GT+ GD+FGILMD  VTG P+    +PMY G TL F
Sbjct  4    ILGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGTLGF  63

Query  148  LGVALYFGRVAGLLLTAEVFVVYWIALQ-WEDPFTAEIYAKR  188
            LG+AL  G  AGLLL   V +VY+IAL+  E+P  A+IY KR
Sbjct  64   LGLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIYGKR  105



Lambda      K        H        a         alpha
   0.329    0.146    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00007173

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase. The S...  130     5e-40


>CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase.  The S. cerevisiae 
phospholipid methyltransferase (EC:2.1.1.16) has a broad 
substrate specificity of unsaturated phospholipids.
Length=105

 Score = 130 bits (329),  Expect = 5e-40, Method: Composition-based stats.
 Identities = 57/102 (56%), Positives = 70/102 (69%), Gaps = 1/102 (1%)

Query  88   ILGSVLFGIGSILVLSSMYALGVTGTYLGDYFGILMDAPVTGFPFNVTGSPMYWGSTLNF  147
            ILG +L  +G  LVLSS  ALG+ GT+ GD+FGILMD  VTG P+    +PMY G TL F
Sbjct  4    ILGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGTLGF  63

Query  148  LGVALYFGRVAGLLLTAEVFVVYWIALQ-WEDPFTAEIYAKR  188
            LG+AL  G  AGLLL   V +VY+IAL+  E+P  A+IY KR
Sbjct  64   LGLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIYGKR  105



Lambda      K        H        a         alpha
   0.328    0.145    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00001453

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase. The S...  130     5e-40


>CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase.  The S. cerevisiae 
phospholipid methyltransferase (EC:2.1.1.16) has a broad 
substrate specificity of unsaturated phospholipids.
Length=105

 Score = 130 bits (329),  Expect = 5e-40, Method: Composition-based stats.
 Identities = 57/102 (56%), Positives = 70/102 (69%), Gaps = 1/102 (1%)

Query  88   ILGSVLFGIGSILVLSSMYALGVTGTYLGDYFGILMDAPVTGFPFNVTGSPMYWGSTLNF  147
            ILG +L  +G  LVLSS  ALG+ GT+ GD+FGILMD  VTG P+    +PMY G TL F
Sbjct  4    ILGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGTLGF  63

Query  148  LGVALYFGRVAGLLLTAEVFVVYWIALQ-WEDPFTAEIYAKR  188
            LG+AL  G  AGLLL   V +VY+IAL+  E+P  A+IY KR
Sbjct  64   LGLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIYGKR  105



Lambda      K        H        a         alpha
   0.328    0.145    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00007174

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462541 pfam08628, Nexin_C, Sorting nexin C terminal. This reg...  131     5e-39
CDD:459940 pfam00787, PX, PX domain. PX domains bind to phosphoin...  83.1    8e-21


>CDD:462541 pfam08628, Nexin_C, Sorting nexin C terminal.  This region is 
found a the C terminal of proteins belonging to the sorting 
nexin family. It is found on proteins which also contain pfam00787.
Length=111

 Score = 131 bits (333),  Expect = 5e-39, Method: Composition-based stats.
 Identities = 54/111 (49%), Positives = 74/111 (67%), Gaps = 4/111 (4%)

Query  193  WLRGRAV---VVVLHQLLGGTIERKVREGVRSLVQDESLLRYLSMVKETMWPGGVLRQN-  248
            WLR RA+     VL QLLG TIERK+RE V  L  +E +  Y+ ++++ +WPGG+L +  
Sbjct  1    WLRRRALNALKQVLQQLLGDTIERKLRESVEWLTSEEQVASYIRLLRDALWPGGLLAEPP  60

Query  249  KVRTASERLKSRTEASLVLATLIPDVAGNVVGRANAQGAARRIFATLNNQR  299
              RT  E+L++R EA  +L +LIPD  G+VVGR NA+ AARR+F  L N R
Sbjct  61   PERTEEEKLRTRKEARKLLLSLIPDALGSVVGRENAREAARRVFDMLQNPR  111


>CDD:459940 pfam00787, PX, PX domain.  PX domains bind to phosphoinositides.
Length=84

 Score = 83.1 bits (206),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 47/76 (62%), Gaps = 0/76 (0%)

Query  6   WAVARRYSEFHELHQRLRIRYPSVRHLEFPRRRMVMKLQKEFLQKRRLALEAYLRNLLLL  65
           W+V RRYS+F ELH++L  ++PSV     P +R + +  +EF++KRR  LE YL+ LL  
Sbjct  9   WSVRRRYSDFVELHKKLLRKFPSVIIPPLPPKRWLGRYNEEFIEKRRKGLEQYLQRLLQH  68

Query  66  PEVCQTRDLRAFLSQR  81
           PE+  +  L  FL   
Sbjct  69  PELRNSEVLLEFLESD  84



Lambda      K        H        a         alpha
   0.321    0.136    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 372672612


Query= TCONS_00001454

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00001455

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase. The S...  129     1e-39


>CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase.  The S. cerevisiae 
phospholipid methyltransferase (EC:2.1.1.16) has a broad 
substrate specificity of unsaturated phospholipids.
Length=105

 Score = 129 bits (327),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 57/102 (56%), Positives = 70/102 (69%), Gaps = 1/102 (1%)

Query  88   ILGSVLFGIGSILVLSSMYALGVTGTYLGDYFGILMDAPVTGFPFNVTGSPMYWGSTLNF  147
            ILG +L  +G  LVLSS  ALG+ GT+ GD+FGILMD  VTG P+    +PMY G TL F
Sbjct  4    ILGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGTLGF  63

Query  148  LGVALYFGRVAGLLLTAEVFVVYWIALQ-WEDPFTAEIYAKR  188
            LG+AL  G  AGLLL   V +VY+IAL+  E+P  A+IY KR
Sbjct  64   LGLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIYGKR  105



Lambda      K        H        a         alpha
   0.329    0.146    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00007175

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase. The S...  130     5e-40


>CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase.  The S. cerevisiae 
phospholipid methyltransferase (EC:2.1.1.16) has a broad 
substrate specificity of unsaturated phospholipids.
Length=105

 Score = 130 bits (329),  Expect = 5e-40, Method: Composition-based stats.
 Identities = 57/102 (56%), Positives = 70/102 (69%), Gaps = 1/102 (1%)

Query  88   ILGSVLFGIGSILVLSSMYALGVTGTYLGDYFGILMDAPVTGFPFNVTGSPMYWGSTLNF  147
            ILG +L  +G  LVLSS  ALG+ GT+ GD+FGILMD  VTG P+    +PMY G TL F
Sbjct  4    ILGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGTLGF  63

Query  148  LGVALYFGRVAGLLLTAEVFVVYWIALQ-WEDPFTAEIYAKR  188
            LG+AL  G  AGLLL   V +VY+IAL+  E+P  A+IY KR
Sbjct  64   LGLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIYGKR  105



Lambda      K        H        a         alpha
   0.328    0.145    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00001456

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase. The S...  131     2e-40


>CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase.  The S. cerevisiae 
phospholipid methyltransferase (EC:2.1.1.16) has a broad 
substrate specificity of unsaturated phospholipids.
Length=105

 Score = 131 bits (331),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 57/102 (56%), Positives = 70/102 (69%), Gaps = 1/102 (1%)

Query  81   ILGSVLFGIGSILVLSSMYALGVTGTYLGDYFGILMDAPVTGFPFNVTGSPMYWGSTLNF  140
            ILG +L  +G  LVLSS  ALG+ GT+ GD+FGILMD  VTG P+    +PMY G TL F
Sbjct  4    ILGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGTLGF  63

Query  141  LGVALYFGRVAGLLLTAEVFVVYWIALQ-WEDPFTAEIYAKR  181
            LG+AL  G  AGLLL   V +VY+IAL+  E+P  A+IY KR
Sbjct  64   LGLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIYGKR  105



Lambda      K        H        a         alpha
   0.327    0.145    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00001457

Length=651


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 822932820


Query= TCONS_00007176

Length=910


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1169943910


Query= TCONS_00001458

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425695 pfam00462, Glutaredoxin, Glutaredoxin                      66.0    4e-15


>CDD:425695 pfam00462, Glutaredoxin, Glutaredoxin.  
Length=60

 Score = 66.0 bits (162),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 38/66 (58%), Gaps = 6/66 (9%)

Query  146  IVIFSKSYCPYSKRAKTILLEKYNIVPAPHVVELDQHAMGQQLQSLLAKNTGRRTVPNVL  205
            +V+++K  CP+ KRAK + L+   +      +++D+     +++  L + +G  TVP V 
Sbjct  1    VVLYTKPTCPFCKRAKRL-LKSLGV--DFEEIDVDEDP---EIREELKELSGWPTVPQVF  54

Query  206  VNGKSI  211
            ++G+ I
Sbjct  55   IDGEHI  60



Lambda      K        H        a         alpha
   0.311    0.128    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00007177

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425695 pfam00462, Glutaredoxin, Glutaredoxin                      65.2    7e-15


>CDD:425695 pfam00462, Glutaredoxin, Glutaredoxin.  
Length=60

 Score = 65.2 bits (160),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 38/66 (58%), Gaps = 6/66 (9%)

Query  128  IVIFSKSYCPYSKRAKTILLEKYNIVPAPHVVELDQHAMGQQLQSLLAKNTGRRTVPNVL  187
            +V+++K  CP+ KRAK + L+   +      +++D+     +++  L + +G  TVP V 
Sbjct  1    VVLYTKPTCPFCKRAKRL-LKSLGV--DFEEIDVDEDP---EIREELKELSGWPTVPQVF  54

Query  188  VNGKSI  193
            ++G+ I
Sbjct  55   IDGEHI  60



Lambda      K        H        a         alpha
   0.312    0.129    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00001459

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425695 pfam00462, Glutaredoxin, Glutaredoxin                      66.0    4e-15


>CDD:425695 pfam00462, Glutaredoxin, Glutaredoxin.  
Length=60

 Score = 66.0 bits (162),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 38/66 (58%), Gaps = 6/66 (9%)

Query  146  IVIFSKSYCPYSKRAKTILLEKYNIVPAPHVVELDQHAMGQQLQSLLAKNTGRRTVPNVL  205
            +V+++K  CP+ KRAK + L+   +      +++D+     +++  L + +G  TVP V 
Sbjct  1    VVLYTKPTCPFCKRAKRL-LKSLGV--DFEEIDVDEDP---EIREELKELSGWPTVPQVF  54

Query  206  VNGKSI  211
            ++G+ I
Sbjct  55   IDGEHI  60



Lambda      K        H        a         alpha
   0.311    0.128    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00001460

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425695 pfam00462, Glutaredoxin, Glutaredoxin                      66.0    3e-15


>CDD:425695 pfam00462, Glutaredoxin, Glutaredoxin.  
Length=60

 Score = 66.0 bits (162),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 38/66 (58%), Gaps = 6/66 (9%)

Query  125  IVIFSKSYCPYSKRAKTILLEKYNIVPAPHVVELDQHAMGQQLQSLLAKNTGRRTVPNVL  184
            +V+++K  CP+ KRAK + L+   +      +++D+     +++  L + +G  TVP V 
Sbjct  1    VVLYTKPTCPFCKRAKRL-LKSLGV--DFEEIDVDEDP---EIREELKELSGWPTVPQVF  54

Query  185  VNGKSI  190
            ++G+ I
Sbjct  55   IDGEHI  60



Lambda      K        H        a         alpha
   0.312    0.128    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00001461

Length=226


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00001463

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425625 pfam00347, Ribosomal_L6, Ribosomal protein L6              56.1    1e-11


>CDD:425625 pfam00347, Ribosomal_L6, Ribosomal protein L6.  
Length=78

 Score = 56.1 bits (136),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 28/81 (35%), Gaps = 6/81 (7%)

Query  97   FPINVNIEKNSETGQYEVEIRNFLGEKIVRRVTAQPGVEVAISSNVKDELQLTGNSLEAV  156
             P+ V +          V +    G K        PGV V +  N    + ++G   E V
Sbjct  1    IPVGVRVSLK------GVNLVLVKGPKGELTREIPPGVTVEVEGNKVTVIVVSGIDKEKV  54

Query  157  SQSAADIQQICRVRNKDIRKV  177
             Q AA I  +  +     + V
Sbjct  55   GQFAALIGTVRALIPNMGKGV  75



Lambda      K        H        a         alpha
   0.319    0.136    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00001462

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425625 pfam00347, Ribosomal_L6, Ribosomal protein L6              59.6    6e-13


>CDD:425625 pfam00347, Ribosomal_L6, Ribosomal protein L6.  
Length=78

 Score = 59.6 bits (145),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 29/84 (35%), Gaps = 6/84 (7%)

Query  97   FPINVNIEKNSETGQYEVEIRNFLGEKIVRRVTAQPGVEVAISSNVKDELQLTGNSLEAV  156
             P+ V +          V +    G K        PGV V +  N    + ++G   E V
Sbjct  1    IPVGVRVSLK------GVNLVLVKGPKGELTREIPPGVTVEVEGNKVTVIVVSGIDKEKV  54

Query  157  SQSAADIQQICRVRNKDIRKFLDG  180
             Q AA I  +  +     +   +G
Sbjct  55   GQFAALIGTVRALIPNMGKGVTEG  78



Lambda      K        H        a         alpha
   0.319    0.136    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00007178

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00007179

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425625 pfam00347, Ribosomal_L6, Ribosomal protein L6              59.6    6e-13


>CDD:425625 pfam00347, Ribosomal_L6, Ribosomal protein L6.  
Length=78

 Score = 59.6 bits (145),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 29/84 (35%), Gaps = 6/84 (7%)

Query  97   FPINVNIEKNSETGQYEVEIRNFLGEKIVRRVTAQPGVEVAISSNVKDELQLTGNSLEAV  156
             P+ V +          V +    G K        PGV V +  N    + ++G   E V
Sbjct  1    IPVGVRVSLK------GVNLVLVKGPKGELTREIPPGVTVEVEGNKVTVIVVSGIDKEKV  54

Query  157  SQSAADIQQICRVRNKDIRKFLDG  180
             Q AA I  +  +     +   +G
Sbjct  55   GQFAALIGTVRALIPNMGKGVTEG  78



Lambda      K        H        a         alpha
   0.319    0.136    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00001464

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425625 pfam00347, Ribosomal_L6, Ribosomal protein L6              59.2    6e-13


>CDD:425625 pfam00347, Ribosomal_L6, Ribosomal protein L6.  
Length=78

 Score = 59.2 bits (144),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 29/84 (35%), Gaps = 6/84 (7%)

Query  81   FPINVNIEKNSETGQYEVEIRNFLGEKIVRRVTAQPGVEVAISSNVKDELQLTGNSLEAV  140
             P+ V +          V +    G K        PGV V +  N    + ++G   E V
Sbjct  1    IPVGVRVSLK------GVNLVLVKGPKGELTREIPPGVTVEVEGNKVTVIVVSGIDKEKV  54

Query  141  SQSAADIQQICRVRNKDIRKFLDG  164
             Q AA I  +  +     +   +G
Sbjct  55   GQFAALIGTVRALIPNMGKGVTEG  78



Lambda      K        H        a         alpha
   0.319    0.136    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00007180

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425625 pfam00347, Ribosomal_L6, Ribosomal protein L6              61.1    1e-13


>CDD:425625 pfam00347, Ribosomal_L6, Ribosomal protein L6.  
Length=78

 Score = 61.1 bits (149),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 29/84 (35%), Gaps = 6/84 (7%)

Query  81   FPINVNIEKNSETGQYEVEIRNFLGEKIVRRVTAQPGVEVAISSNVKDELQLTGNSLEAV  140
             P+ V +          V +    G K        PGV V +  N    + ++G   E V
Sbjct  1    IPVGVRVSLK------GVNLVLVKGPKGELTREIPPGVTVEVEGNKVTVIVVSGIDKEKV  54

Query  141  SQSAADIQQICRVRNKDIRKFLDG  164
             Q AA I  +  +     +   +G
Sbjct  55   GQFAALIGTVRALIPNMGKGVTEG  78



Lambda      K        H        a         alpha
   0.318    0.136    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00001465

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425625 pfam00347, Ribosomal_L6, Ribosomal protein L6              61.1    5e-14


>CDD:425625 pfam00347, Ribosomal_L6, Ribosomal protein L6.  
Length=78

 Score = 61.1 bits (149),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 29/84 (35%), Gaps = 6/84 (7%)

Query  41   FPINVNIEKNSETGQYEVEIRNFLGEKIVRRVTAQPGVEVAISSNVKDELQLTGNSLEAV  100
             P+ V +          V +    G K        PGV V +  N    + ++G   E V
Sbjct  1    IPVGVRVSLK------GVNLVLVKGPKGELTREIPPGVTVEVEGNKVTVIVVSGIDKEKV  54

Query  101  SQSAADIQQICRVRNKDIRKFLDG  124
             Q AA I  +  +     +   +G
Sbjct  55   GQFAALIGTVRALIPNMGKGVTEG  78



Lambda      K        H        a         alpha
   0.319    0.135    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00007181

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF333...  92.2    1e-22
CDD:396341 pfam01734, Patatin, Patatin-like phospholipase. This f...  83.4    4e-19


>CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF3336).  This 
family of proteins are functionally uncharacterized. This 
family is found in bacteria and eukaryotes. This presumed domain 
is typically between 143 to 227 amino acids in length.
Length=139

 Score = 92.2 bits (230),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 33/85 (39%), Positives = 50/85 (59%), Gaps = 7/85 (8%)

Query  1    MTAREEEDILTLANLLRSGLVRNLGNITSPKLFLHAYAGTKLLIDDYITQVALSIQHIAA  60
              AREEED+  L  LLR+ L RN   I +P+L+ H Y GTK LI++YI +V  S++++A 
Sbjct  62   RRAREEEDLRALLFLLRTCLKRNFAGIENPRLYSHTYYGTKNLIEEYIDEVEKSLEYLAE  121

Query  61   LQTAPVHESGFTSQAKLELLHDTRQ  85
              +        + + KLE   +TR+
Sbjct  122  SPS-------LSLEEKLEFFKETRK  139


>CDD:396341 pfam01734, Patatin, Patatin-like phospholipase.  This family 
consists of various patatin glycoproteins from plants. The patatin 
protein accounts for up to 40% of the total soluble protein 
in potato tubers. Patatin is a storage protein but it 
also has the enzymatic activity of lipid acyl hydrolase, catalyzing 
the cleavage of fatty acids from membrane lipids. Members 
of this family have been found also in vertebrates.
Length=190

 Score = 83.4 bits (206),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 54/194 (28%), Positives = 78/194 (40%), Gaps = 30/194 (15%)

Query  92   LLLQGGSIFGVCHLGVVKALHLQGLLPRIITGTGTGALIAALVGIHSEDELLSFLDSDGI  151
            L+L GG   G  HLGV+KAL   G+   +I+GT  GA+ AAL        L    D + I
Sbjct  1    LVLSGGGARGAYHLGVLKALGEAGIRFDVISGTSAGAINAAL--------LALGRDPEEI  52

Query  152  --DLTAFDRRRSEKLSGEHAQIPPYSSKDGWLGTLFRRVKRYIEKGYFLDAGVLEECVRA  209
               L   D                 S       +L   ++  I +G   D   L E +R 
Sbjct  53   EDLLLELDLNLFL------------SLIRKRALSLLALLRGLIGEGGLFDGDALRELLRK  100

Query  210  NLGDLTFEEAYAR-------SKRILNITIATSGKNGTPNLLNYLTAPNVLIWSAAVASNA  262
             LGDLT EE  AR       + R L   I+T+       LL      +  +  A +AS +
Sbjct  101  LLGDLTLEELAARLSLLLVVALRALLTVISTALGTRARILLPDDLDDDEDLADAVLAS-S  159

Query  263  STGSLYQPVTVYCK  276
            +   ++ PV +  +
Sbjct  160  ALPGVFPPVRLDGE  173



Lambda      K        H        a         alpha
   0.320    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00001466

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF333...  134     9e-38
CDD:396341 pfam01734, Patatin, Patatin-like phospholipase. This f...  83.4    5e-19


>CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF3336).  This 
family of proteins are functionally uncharacterized. This 
family is found in bacteria and eukaryotes. This presumed domain 
is typically between 143 to 227 amino acids in length.
Length=139

 Score = 134 bits (340),  Expect = 9e-38, Method: Composition-based stats.
 Identities = 58/146 (40%), Positives = 89/146 (61%), Gaps = 7/146 (5%)

Query  32   WWFSKSPKTRLRHRLATAQTFEEWEEAAFELDELRSADLWRQNPTSRHYDYRLILGRVEA  91
            +   +  + RLR +L  A+++EEW+EAA ELDEL   D W++N  S +YDY+L+   +  
Sbjct  1    FVTWRGRRKRLRKKLRNAKSYEEWKEAAKELDELLGNDEWKENDESAYYDYKLVRRVLSQ  60

Query  92   LMTAREEEDILTLANLLRSGLVRNLGNITSPKLFLHAYAGTKLLIDDYITQVALSIQHIA  151
            L  AREEED+  L  LLR+ L RN   I +P+L+ H Y GTK LI++YI +V  S++++A
Sbjct  61   LRRAREEEDLRALLFLLRTCLKRNFAGIENPRLYSHTYYGTKNLIEEYIDEVEKSLEYLA  120

Query  152  ALQTAPVHESGFTSQAKLELLHDTRQ  177
               +        + + KLE   +TR+
Sbjct  121  ESPS-------LSLEEKLEFFKETRK  139


>CDD:396341 pfam01734, Patatin, Patatin-like phospholipase.  This family 
consists of various patatin glycoproteins from plants. The patatin 
protein accounts for up to 40% of the total soluble protein 
in potato tubers. Patatin is a storage protein but it 
also has the enzymatic activity of lipid acyl hydrolase, catalyzing 
the cleavage of fatty acids from membrane lipids. Members 
of this family have been found also in vertebrates.
Length=190

 Score = 83.4 bits (206),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 54/194 (28%), Positives = 78/194 (40%), Gaps = 30/194 (15%)

Query  184  LLLQGGSIFGVCHLGVVKALHLQGLLPRIITGTGTGALIAALVGIHSEDELLSFLDSDGI  243
            L+L GG   G  HLGV+KAL   G+   +I+GT  GA+ AAL        L    D + I
Sbjct  1    LVLSGGGARGAYHLGVLKALGEAGIRFDVISGTSAGAINAAL--------LALGRDPEEI  52

Query  244  --DLTAFDRRRSEKLSGEHAQIPPYSSKDGWLGTLFRRVKRYIEKGYFLDAGVLEECVRA  301
               L   D                 S       +L   ++  I +G   D   L E +R 
Sbjct  53   EDLLLELDLNLFL------------SLIRKRALSLLALLRGLIGEGGLFDGDALRELLRK  100

Query  302  NLGDLTFEEAYAR-------SKRILNITIATSGKNGTPNLLNYLTAPNVLIWSAAVASNA  354
             LGDLT EE  AR       + R L   I+T+       LL      +  +  A +AS +
Sbjct  101  LLGDLTLEELAARLSLLLVVALRALLTVISTALGTRARILLPDDLDDDEDLADAVLAS-S  159

Query  355  STGSLYQPVTVYCK  368
            +   ++ PV +  +
Sbjct  160  ALPGVFPPVRLDGE  173



Lambda      K        H        a         alpha
   0.321    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 750202856


Query= TCONS_00001468

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF333...  134     2e-39
CDD:396341 pfam01734, Patatin, Patatin-like phospholipase. This f...  69.2    2e-14


>CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF3336).  This 
family of proteins are functionally uncharacterized. This 
family is found in bacteria and eukaryotes. This presumed domain 
is typically between 143 to 227 amino acids in length.
Length=139

 Score = 134 bits (340),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 58/146 (40%), Positives = 89/146 (61%), Gaps = 7/146 (5%)

Query  27   WWFSKSPKTRLRHRLATAQTFEEWEEAAFELDELRSADLWRQNPTSRHYDYRLILGRVEA  86
            +   +  + RLR +L  A+++EEW+EAA ELDEL   D W++N  S +YDY+L+   +  
Sbjct  1    FVTWRGRRKRLRKKLRNAKSYEEWKEAAKELDELLGNDEWKENDESAYYDYKLVRRVLSQ  60

Query  87   LMTAREEEDILTLANLLRSGLVRNLGNITSPKLFLHAYAGTKLLIDDYITQVALSIQHIA  146
            L  AREEED+  L  LLR+ L RN   I +P+L+ H Y GTK LI++YI +V  S++++A
Sbjct  61   LRRAREEEDLRALLFLLRTCLKRNFAGIENPRLYSHTYYGTKNLIEEYIDEVEKSLEYLA  120

Query  147  ALQTAPVHESGFTSQAKLELLHDTRQ  172
               +        + + KLE   +TR+
Sbjct  121  ESPS-------LSLEEKLEFFKETRK  139


>CDD:396341 pfam01734, Patatin, Patatin-like phospholipase.  This family 
consists of various patatin glycoproteins from plants. The patatin 
protein accounts for up to 40% of the total soluble protein 
in potato tubers. Patatin is a storage protein but it 
also has the enzymatic activity of lipid acyl hydrolase, catalyzing 
the cleavage of fatty acids from membrane lipids. Members 
of this family have been found also in vertebrates.
Length=190

 Score = 69.2 bits (169),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 41/165 (25%), Positives = 58/165 (35%), Gaps = 18/165 (11%)

Query  179  LLLQGGSIFGVCHLGVVKALHLQGLLPRIITGTGTGALIAALVGIHSEDELLSFLDSDGI  238
            L+L GG   G  HLGV+KAL   G+   +I+GT  GA+ AA         LL+       
Sbjct  1    LVLSGGGARGAYHLGVLKALGEAGIRFDVISGTSAGAINAA---------LLALGRDPEE  51

Query  239  DLTAFDRRRSEKLSGEHAQIPPYSSKDGWLGTLFRRVKRYIEKGYFLDAGVLEECVRANL  298
                                   S       +L   ++  I +G   D   L E +R  L
Sbjct  52   IEDLLLELDLNLF---------LSLIRKRALSLLALLRGLIGEGGLFDGDALRELLRKLL  102

Query  299  GDLTFEEAYARSKRILNITIATSGKNGTPNLLNYLTAPNVVSTFN  343
            GDLT EE  AR   +L + +       +  L             +
Sbjct  103  GDLTLEELAARLSLLLVVALRALLTVISTALGTRARILLPDDLDD  147



Lambda      K        H        a         alpha
   0.321    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00001467

Length=589
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF333...  134     9e-38
CDD:396341 pfam01734, Patatin, Patatin-like phospholipase. This f...  83.8    4e-19


>CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF3336).  This 
family of proteins are functionally uncharacterized. This 
family is found in bacteria and eukaryotes. This presumed domain 
is typically between 143 to 227 amino acids in length.
Length=139

 Score = 134 bits (340),  Expect = 9e-38, Method: Composition-based stats.
 Identities = 58/146 (40%), Positives = 89/146 (61%), Gaps = 7/146 (5%)

Query  27   WWFSKSPKTRLRHRLATAQTFEEWEEAAFELDELRSADLWRQNPTSRHYDYRLILGRVEA  86
            +   +  + RLR +L  A+++EEW+EAA ELDEL   D W++N  S +YDY+L+   +  
Sbjct  1    FVTWRGRRKRLRKKLRNAKSYEEWKEAAKELDELLGNDEWKENDESAYYDYKLVRRVLSQ  60

Query  87   LMTAREEEDILTLANLLRSGLVRNLGNITSPKLFLHAYAGTKLLIDDYITQVALSIQHIA  146
            L  AREEED+  L  LLR+ L RN   I +P+L+ H Y GTK LI++YI +V  S++++A
Sbjct  61   LRRAREEEDLRALLFLLRTCLKRNFAGIENPRLYSHTYYGTKNLIEEYIDEVEKSLEYLA  120

Query  147  ALQTAPVHESGFTSQAKLELLHDTRQ  172
               +        + + KLE   +TR+
Sbjct  121  ESPS-------LSLEEKLEFFKETRK  139


>CDD:396341 pfam01734, Patatin, Patatin-like phospholipase.  This family 
consists of various patatin glycoproteins from plants. The patatin 
protein accounts for up to 40% of the total soluble protein 
in potato tubers. Patatin is a storage protein but it 
also has the enzymatic activity of lipid acyl hydrolase, catalyzing 
the cleavage of fatty acids from membrane lipids. Members 
of this family have been found also in vertebrates.
Length=190

 Score = 83.8 bits (207),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 54/194 (28%), Positives = 78/194 (40%), Gaps = 30/194 (15%)

Query  179  LLLQGGSIFGVCHLGVVKALHLQGLLPRIITGTGTGALIAALVGIHSEDELLSFLDSDGI  238
            L+L GG   G  HLGV+KAL   G+   +I+GT  GA+ AAL        L    D + I
Sbjct  1    LVLSGGGARGAYHLGVLKALGEAGIRFDVISGTSAGAINAAL--------LALGRDPEEI  52

Query  239  --DLTAFDRRRSEKLSGEHAQIPPYSSKDGWLGTLFRRVKRYIEKGYFLDAGVLEECVRA  296
               L   D                 S       +L   ++  I +G   D   L E +R 
Sbjct  53   EDLLLELDLNLFL------------SLIRKRALSLLALLRGLIGEGGLFDGDALRELLRK  100

Query  297  NLGDLTFEEAYAR-------SKRILNITIATSGKNGTPNLLNYLTAPNVLIWSAAVASNA  349
             LGDLT EE  AR       + R L   I+T+       LL      +  +  A +AS +
Sbjct  101  LLGDLTLEELAARLSLLLVVALRALLTVISTALGTRARILLPDDLDDDEDLADAVLAS-S  159

Query  350  STGSLYQPVTVYCK  363
            +   ++ PV +  +
Sbjct  160  ALPGVFPPVRLDGE  173



Lambda      K        H        a         alpha
   0.321    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 742730716


Query= TCONS_00007182

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF333...  93.0    2e-24
CDD:396341 pfam01734, Patatin, Patatin-like phospholipase. This f...  68.4    1e-14


>CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF3336).  This 
family of proteins are functionally uncharacterized. This 
family is found in bacteria and eukaryotes. This presumed domain 
is typically between 143 to 227 amino acids in length.
Length=139

 Score = 93.0 bits (232),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 33/85 (39%), Positives = 50/85 (59%), Gaps = 7/85 (8%)

Query  1    MTAREEEDILTLANLLRSGLVRNLGNITSPKLFLHAYAGTKLLIDDYITQVALSIQHIAA  60
              AREEED+  L  LLR+ L RN   I +P+L+ H Y GTK LI++YI +V  S++++A 
Sbjct  62   RRAREEEDLRALLFLLRTCLKRNFAGIENPRLYSHTYYGTKNLIEEYIDEVEKSLEYLAE  121

Query  61   LQTAPVHESGFTSQAKLELLHDTRQ  85
              +        + + KLE   +TR+
Sbjct  122  SPS-------LSLEEKLEFFKETRK  139


>CDD:396341 pfam01734, Patatin, Patatin-like phospholipase.  This family 
consists of various patatin glycoproteins from plants. The patatin 
protein accounts for up to 40% of the total soluble protein 
in potato tubers. Patatin is a storage protein but it 
also has the enzymatic activity of lipid acyl hydrolase, catalyzing 
the cleavage of fatty acids from membrane lipids. Members 
of this family have been found also in vertebrates.
Length=190

 Score = 68.4 bits (167),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 41/165 (25%), Positives = 58/165 (35%), Gaps = 18/165 (11%)

Query  92   LLLQGGSIFGVCHLGVVKALHLQGLLPRIITGTGTGALIAALVGIHSEDELLSFLDSDGI  151
            L+L GG   G  HLGV+KAL   G+   +I+GT  GA+ AA         LL+       
Sbjct  1    LVLSGGGARGAYHLGVLKALGEAGIRFDVISGTSAGAINAA---------LLALGRDPEE  51

Query  152  DLTAFDRRRSEKLSGEHAQIPPYSSKDGWLGTLFRRVKRYIEKGYFLDAGVLEECVRANL  211
                                   S       +L   ++  I +G   D   L E +R  L
Sbjct  52   IEDLLLELDLNLF---------LSLIRKRALSLLALLRGLIGEGGLFDGDALRELLRKLL  102

Query  212  GDLTFEEAYARSKRILNITIATSGKNGTPNLLNYLTAPNVVSTFN  256
            GDLT EE  AR   +L + +       +  L             +
Sbjct  103  GDLTLEELAARLSLLLVVALRALLTVISTALGTRARILLPDDLDD  147



Lambda      K        H        a         alpha
   0.320    0.137    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00007183

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF333...  134     2e-39
CDD:396341 pfam01734, Patatin, Patatin-like phospholipase. This f...  69.2    2e-14


>CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF3336).  This 
family of proteins are functionally uncharacterized. This 
family is found in bacteria and eukaryotes. This presumed domain 
is typically between 143 to 227 amino acids in length.
Length=139

 Score = 134 bits (340),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 58/146 (40%), Positives = 89/146 (61%), Gaps = 7/146 (5%)

Query  27   WWFSKSPKTRLRHRLATAQTFEEWEEAAFELDELRSADLWRQNPTSRHYDYRLILGRVEA  86
            +   +  + RLR +L  A+++EEW+EAA ELDEL   D W++N  S +YDY+L+   +  
Sbjct  1    FVTWRGRRKRLRKKLRNAKSYEEWKEAAKELDELLGNDEWKENDESAYYDYKLVRRVLSQ  60

Query  87   LMTAREEEDILTLANLLRSGLVRNLGNITSPKLFLHAYAGTKLLIDDYITQVALSIQHIA  146
            L  AREEED+  L  LLR+ L RN   I +P+L+ H Y GTK LI++YI +V  S++++A
Sbjct  61   LRRAREEEDLRALLFLLRTCLKRNFAGIENPRLYSHTYYGTKNLIEEYIDEVEKSLEYLA  120

Query  147  ALQTAPVHESGFTSQAKLELLHDTRQ  172
               +        + + KLE   +TR+
Sbjct  121  ESPS-------LSLEEKLEFFKETRK  139


>CDD:396341 pfam01734, Patatin, Patatin-like phospholipase.  This family 
consists of various patatin glycoproteins from plants. The patatin 
protein accounts for up to 40% of the total soluble protein 
in potato tubers. Patatin is a storage protein but it 
also has the enzymatic activity of lipid acyl hydrolase, catalyzing 
the cleavage of fatty acids from membrane lipids. Members 
of this family have been found also in vertebrates.
Length=190

 Score = 69.2 bits (169),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 41/165 (25%), Positives = 58/165 (35%), Gaps = 18/165 (11%)

Query  179  LLLQGGSIFGVCHLGVVKALHLQGLLPRIITGTGTGALIAALVGIHSEDELLSFLDSDGI  238
            L+L GG   G  HLGV+KAL   G+   +I+GT  GA+ AA         LL+       
Sbjct  1    LVLSGGGARGAYHLGVLKALGEAGIRFDVISGTSAGAINAA---------LLALGRDPEE  51

Query  239  DLTAFDRRRSEKLSGEHAQIPPYSSKDGWLGTLFRRVKRYIEKGYFLDAGVLEECVRANL  298
                                   S       +L   ++  I +G   D   L E +R  L
Sbjct  52   IEDLLLELDLNLF---------LSLIRKRALSLLALLRGLIGEGGLFDGDALRELLRKLL  102

Query  299  GDLTFEEAYARSKRILNITIATSGKNGTPNLLNYLTAPNVVSTFN  343
            GDLT EE  AR   +L + +       +  L             +
Sbjct  103  GDLTLEELAARLSLLLVVALRALLTVISTALGTRARILLPDDLDD  147



Lambda      K        H        a         alpha
   0.321    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00001469

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF333...  134     2e-39
CDD:396341 pfam01734, Patatin, Patatin-like phospholipase. This f...  68.8    3e-14


>CDD:432096 pfam11815, DUF3336, Domain of unknown function (DUF3336).  This 
family of proteins are functionally uncharacterized. This 
family is found in bacteria and eukaryotes. This presumed domain 
is typically between 143 to 227 amino acids in length.
Length=139

 Score = 134 bits (340),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 58/146 (40%), Positives = 89/146 (61%), Gaps = 7/146 (5%)

Query  32   WWFSKSPKTRLRHRLATAQTFEEWEEAAFELDELRSADLWRQNPTSRHYDYRLILGRVEA  91
            +   +  + RLR +L  A+++EEW+EAA ELDEL   D W++N  S +YDY+L+   +  
Sbjct  1    FVTWRGRRKRLRKKLRNAKSYEEWKEAAKELDELLGNDEWKENDESAYYDYKLVRRVLSQ  60

Query  92   LMTAREEEDILTLANLLRSGLVRNLGNITSPKLFLHAYAGTKLLIDDYITQVALSIQHIA  151
            L  AREEED+  L  LLR+ L RN   I +P+L+ H Y GTK LI++YI +V  S++++A
Sbjct  61   LRRAREEEDLRALLFLLRTCLKRNFAGIENPRLYSHTYYGTKNLIEEYIDEVEKSLEYLA  120

Query  152  ALQTAPVHESGFTSQAKLELLHDTRQ  177
               +        + + KLE   +TR+
Sbjct  121  ESPS-------LSLEEKLEFFKETRK  139


>CDD:396341 pfam01734, Patatin, Patatin-like phospholipase.  This family 
consists of various patatin glycoproteins from plants. The patatin 
protein accounts for up to 40% of the total soluble protein 
in potato tubers. Patatin is a storage protein but it 
also has the enzymatic activity of lipid acyl hydrolase, catalyzing 
the cleavage of fatty acids from membrane lipids. Members 
of this family have been found also in vertebrates.
Length=190

 Score = 68.8 bits (168),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 41/165 (25%), Positives = 58/165 (35%), Gaps = 18/165 (11%)

Query  184  LLLQGGSIFGVCHLGVVKALHLQGLLPRIITGTGTGALIAALVGIHSEDELLSFLDSDGI  243
            L+L GG   G  HLGV+KAL   G+   +I+GT  GA+ AA         LL+       
Sbjct  1    LVLSGGGARGAYHLGVLKALGEAGIRFDVISGTSAGAINAA---------LLALGRDPEE  51

Query  244  DLTAFDRRRSEKLSGEHAQIPPYSSKDGWLGTLFRRVKRYIEKGYFLDAGVLEECVRANL  303
                                   S       +L   ++  I +G   D   L E +R  L
Sbjct  52   IEDLLLELDLNLF---------LSLIRKRALSLLALLRGLIGEGGLFDGDALRELLRKLL  102

Query  304  GDLTFEEAYARSKRILNITIATSGKNGTPNLLNYLTAPNVVSTFN  348
            GDLT EE  AR   +L + +       +  L             +
Sbjct  103  GDLTLEELAARLSLLLVVALRALLTVISTALGTRARILLPDDLDD  147



Lambda      K        H        a         alpha
   0.322    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00001470

Length=540


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 679815634


Query= TCONS_00001472

Length=540


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 679815634


Query= TCONS_00001471

Length=540


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 679815634


Query= TCONS_00007184

Length=540


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 679815634


Query= TCONS_00007185

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00001474

Length=559


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 697897876


Query= TCONS_00001473

Length=559


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 697897876


Query= TCONS_00001476

Length=559


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 697897876


Query= TCONS_00001477

Length=540


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 679815634


Query= TCONS_00001478

Length=559


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 697897876


Query= TCONS_00007186

Length=282


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00007187

Length=795
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462371 pfam08145, BOP1NT, BOP1NT (NUC169) domain. This N term...  438     3e-150


>CDD:462371 pfam08145, BOP1NT, BOP1NT (NUC169) domain.  This N terminal domain 
is found in BOP1-like WD40 proteins.
Length=259

 Score = 438 bits (1128),  Expect = 3e-150, Method: Composition-based stats.
 Identities = 172/265 (65%), Positives = 206/265 (78%), Gaps = 10/265 (4%)

Query  164  YDQYPHIGYDINGKKIMRPAKGEALDALLDSIEIPKGWTGLTDPSTGKPLELSQEELELL  223
            YD YPHIGYDI+GKKIM+PAKG+ALD  LDS++ P  W  + D  TGK + L+ E+LEL+
Sbjct  1    YDDYPHIGYDIDGKKIMKPAKGDALDKFLDSMDDPNAWRTVYDKLTGKDVVLTDEDLELI  60

Query  224  RKVQMNEIPEDGYNPYEPIVEWFTSQQEIMPLSAAPEPKRRFVPSKHEAKRVMKIVKAIR  283
            R++Q  E P+ GY+PYEP VEWFTS+ EI PLS APEPKRRF+PSK EAK+VMK+V+AIR
Sbjct  61   RRIQKGEFPDAGYDPYEPYVEWFTSEDEIHPLSNAPEPKRRFIPSKWEAKKVMKLVRAIR  120

Query  284  EGRILPFKPPTEEDEEDDTIVKYDLWADE----AERKDHPMHIPAPKLPPPGYEESYHPP  339
             GRI P KP  EE +       YDLWADE     ER+  P HIPAPKLP PG+ ESY+PP
Sbjct  121  MGRIKPRKPKEEEPK------FYDLWADEDETEEERRRRPDHIPAPKLPLPGHAESYNPP  174

Query  340  PEYLPSRKERKTWEEADPEDRDREFLPNDFGSLRRVPGYENFVKEKFERCLDLYLAPRVR  399
            PEYLP+ +ERK WEE DPEDR   FLP  + SLR VP YE F+KE+FERCLDLYL PRVR
Sbjct  175  PEYLPTEEERKKWEEMDPEDRKLNFLPQKYDSLRLVPAYEKFIKERFERCLDLYLCPRVR  234

Query  400  RSKLNIDPESLLPKLPSPEELKPFP  424
            +++LNIDPESLLPKLPSP++L+PFP
Sbjct  235  KNRLNIDPESLLPKLPSPKDLRPFP  259



Lambda      K        H        a         alpha
   0.314    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1020061552


Query= TCONS_00001479

Length=795
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462371 pfam08145, BOP1NT, BOP1NT (NUC169) domain. This N term...  438     3e-150


>CDD:462371 pfam08145, BOP1NT, BOP1NT (NUC169) domain.  This N terminal domain 
is found in BOP1-like WD40 proteins.
Length=259

 Score = 438 bits (1128),  Expect = 3e-150, Method: Composition-based stats.
 Identities = 172/265 (65%), Positives = 206/265 (78%), Gaps = 10/265 (4%)

Query  164  YDQYPHIGYDINGKKIMRPAKGEALDALLDSIEIPKGWTGLTDPSTGKPLELSQEELELL  223
            YD YPHIGYDI+GKKIM+PAKG+ALD  LDS++ P  W  + D  TGK + L+ E+LEL+
Sbjct  1    YDDYPHIGYDIDGKKIMKPAKGDALDKFLDSMDDPNAWRTVYDKLTGKDVVLTDEDLELI  60

Query  224  RKVQMNEIPEDGYNPYEPIVEWFTSQQEIMPLSAAPEPKRRFVPSKHEAKRVMKIVKAIR  283
            R++Q  E P+ GY+PYEP VEWFTS+ EI PLS APEPKRRF+PSK EAK+VMK+V+AIR
Sbjct  61   RRIQKGEFPDAGYDPYEPYVEWFTSEDEIHPLSNAPEPKRRFIPSKWEAKKVMKLVRAIR  120

Query  284  EGRILPFKPPTEEDEEDDTIVKYDLWADE----AERKDHPMHIPAPKLPPPGYEESYHPP  339
             GRI P KP  EE +       YDLWADE     ER+  P HIPAPKLP PG+ ESY+PP
Sbjct  121  MGRIKPRKPKEEEPK------FYDLWADEDETEEERRRRPDHIPAPKLPLPGHAESYNPP  174

Query  340  PEYLPSRKERKTWEEADPEDRDREFLPNDFGSLRRVPGYENFVKEKFERCLDLYLAPRVR  399
            PEYLP+ +ERK WEE DPEDR   FLP  + SLR VP YE F+KE+FERCLDLYL PRVR
Sbjct  175  PEYLPTEEERKKWEEMDPEDRKLNFLPQKYDSLRLVPAYEKFIKERFERCLDLYLCPRVR  234

Query  400  RSKLNIDPESLLPKLPSPEELKPFP  424
            +++LNIDPESLLPKLPSP++L+PFP
Sbjct  235  KNRLNIDPESLLPKLPSPKDLRPFP  259



Lambda      K        H        a         alpha
   0.314    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1020061552


Query= TCONS_00001480

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family. Mob1 is ...  89.9    2e-24


>CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family.  Mob1 is an essential 
Saccharomyces cerevisiae protein, identified from a two-hybrid 
screen, that binds Mps1p, a protein kinase essential 
for spindle pole body duplication and mitotic checkpoint 
regulation. Mob1 contains no known structural motifs; however 
MOB1 is a member of a conserved gene family and shares sequence 
similarity with a nonessential yeast gene, MOB2. Mob1 
is a phosphoprotein in vivo and a substrate for the Mps1p kinase 
in vitro. Conditional alleles of MOB1 cause a late nuclear 
division arrest at restrictive temperature. This family 
also includes phocein, a rat protein that by yeast two hybrid 
interacts with striatin.
Length=171

 Score = 89.9 bits (224),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 24/69 (35%), Positives = 37/69 (54%), Gaps = 1/69 (1%)

Query  40   SSGFPQTFYKDCQGIMKQMFRCYAHLYHAHWLNPFWHINKHDILNMCFVHFVTVAKYYKL  99
               FP+ F    + I +++FR YAH+YH H+      +     LN CF HFV   + + L
Sbjct  104  GVPFPKNFLSIVKKIFRRLFRVYAHIYHHHF-EEIVELGLEAHLNTCFKHFVLFVREFDL  162

Query  100  VSDKEMEPM  108
            +  KE+EP+
Sbjct  163  LDKKELEPL  171



Lambda      K        H        a         alpha
   0.321    0.135    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00001481

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461126 pfam04004, Leo1, Leo1-like protein. Members of this fa...  147     8e-43


>CDD:461126 pfam04004, Leo1, Leo1-like protein.  Members of this family are 
part of the Paf1/RNA polymerase II complex. The Paf1 complex 
probably functions during the elongation phase of transcription. 
The Leo1 subunit of the yeast Paf1-complex binds RNA 
and contributes to complex recruitment. The subunit acts by 
co-ordinating co-transcriptional chromain modifications and 
helping recruitment of mRNA 3prime-end processing factors.
Length=163

 Score = 147 bits (373),  Expect = 8e-43, Method: Composition-based stats.
 Identities = 65/184 (35%), Positives = 89/184 (48%), Gaps = 36/184 (20%)

Query  131  YTMPVPTFLSIETEEFDPETYVAP---------------PFNTAATSLCWRHDPNDESLL  175
            Y + VP FLSIE + FDPET+                     T   ++ WR+ P+     
Sbjct  1    YLLKVPNFLSIEPKPFDPETFEPEVDEESEVLDEEGRFSIKLTVENTIRWRYSPDTGIK-  59

Query  176  QSNARIIRWEDGSLTLQLASAPKEQYRISTKPLAPTNKAGEYDTKLDSHVYLGAAAETSS  235
            +SNARI+RW DGSL+LQL     E + I +KPL             D H YL A  E+S 
Sbjct  60   ESNARIVRWSDGSLSLQLGD---EHFDIQSKPLQ------------DDHTYLAARHESSE  104

Query  236  VFRLTSHLTHGLTVLPTTVETDDAVQRLQESLAAAARGSKKTADGSAPVIEVKEDPELAK  295
            + +   H+T  LT  PT+ +  D  +RL  +LAA  +  K  A     +    EDPEL K
Sbjct  105  LLQTQGHITEQLTFRPTSTQ-SDTHRRLTAALAARHK--KTGAKIMLIITT--EDPELEK  159

Query  296  RQAE  299
            ++AE
Sbjct  160  KEAE  163



Lambda      K        H        a         alpha
   0.307    0.129    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00007188

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460896 pfam03357, Snf7, Snf7. This family of proteins are inv...  89.6    3e-23


>CDD:460896 pfam03357, Snf7, Snf7.  This family of proteins are involved 
in protein sorting and transport from the endosome to the vacuole/lysosome 
in eukaryotic cells. Vacuoles/lysosomes play 
an important role in the degradation of both lipids and cellular 
proteins. In order to perform this degradative function, 
vacuoles/lysosomes contain numerous hydrolases which have 
been transported in the form of inactive precursors via the 
biosynthetic pathway and are proteolytically activated upon 
delivery to the vacuole/lysosome. The delivery of transmembrane 
proteins, such as activated cell surface receptors to the 
lumen of the vacuole/lysosome, either for degradation/downregulation, 
or in the case of hydrolases, for proper localization, 
requires the formation of multivesicular bodies (MVBs). 
These late endosomal structures are formed by invaginating 
and budding of the limiting membrane into the lumen of the 
compartment. During this process, a subset of the endosomal 
membrane proteins is sorted into the forming vesicles. Mature 
MVBs fuse with the vacuole/lysosome, thereby releasing cargo 
containing vesicles into its hydrolytic lumen for degradation. 
Endosomal proteins that are not sorted into the intralumenal 
MVB vesicles are either recycled back to the plasma 
membrane or Golgi complex, or remain in the limiting membrane 
of the MVB and are thereby transported to the limiting membrane 
of the vacuole/lysosome as a consequence of fusion. Therefore, 
the MVB sorting pathway plays a critical role in the 
decision between recycling and degradation of membrane proteins. 
A few archaeal sequences are also present within this 
family.
Length=168

 Score = 89.6 bits (223),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 52/169 (31%), Positives = 91/169 (54%), Gaps = 7/169 (4%)

Query  15   RAILDLKNQRDKLRQHQKRITVLTDRETAIARECLARDDRRRALLALRRKKYQETLLSKT  74
             AI  L+    KL + Q+ +    ++     ++   + ++  ALL L++KK  E  L + 
Sbjct  1    EAIRSLRKAIRKLDKKQESLEKKIEKLELEIKKLAKKGNKDAALLLLKQKKRYEKQLDQL  60

Query  75   DAQLEQLEHLTSQVEFSLVQKDVLFGLQQGTKVLQAINKEMGGIEAVEKLMGETEEARAY  134
            D QL  LE     +E +   ++VL  ++QG K ++A+NK M  I+ ++KLM E E+    
Sbjct  61   DGQLSNLEQQRMAIENAKSNQEVLNAMKQGAKAMKAMNKLM-DIDKIDKLMDEIEDQMEK  119

Query  135  QEEISQMLAGQL---SNQDEDEVENELERLRQE---TEAITLPNVPTAP  177
             +EIS+ML+  L     +DE+E++ EL+ L  E    E++ LP+ P+  
Sbjct  120  ADEISEMLSDPLDDADEEDEEELDAELDALLDEIGDEESVELPSAPSGE  168



Lambda      K        H        a         alpha
   0.310    0.126    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00001482

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460896 pfam03357, Snf7, Snf7. This family of proteins are inv...  89.6    3e-23


>CDD:460896 pfam03357, Snf7, Snf7.  This family of proteins are involved 
in protein sorting and transport from the endosome to the vacuole/lysosome 
in eukaryotic cells. Vacuoles/lysosomes play 
an important role in the degradation of both lipids and cellular 
proteins. In order to perform this degradative function, 
vacuoles/lysosomes contain numerous hydrolases which have 
been transported in the form of inactive precursors via the 
biosynthetic pathway and are proteolytically activated upon 
delivery to the vacuole/lysosome. The delivery of transmembrane 
proteins, such as activated cell surface receptors to the 
lumen of the vacuole/lysosome, either for degradation/downregulation, 
or in the case of hydrolases, for proper localization, 
requires the formation of multivesicular bodies (MVBs). 
These late endosomal structures are formed by invaginating 
and budding of the limiting membrane into the lumen of the 
compartment. During this process, a subset of the endosomal 
membrane proteins is sorted into the forming vesicles. Mature 
MVBs fuse with the vacuole/lysosome, thereby releasing cargo 
containing vesicles into its hydrolytic lumen for degradation. 
Endosomal proteins that are not sorted into the intralumenal 
MVB vesicles are either recycled back to the plasma 
membrane or Golgi complex, or remain in the limiting membrane 
of the MVB and are thereby transported to the limiting membrane 
of the vacuole/lysosome as a consequence of fusion. Therefore, 
the MVB sorting pathway plays a critical role in the 
decision between recycling and degradation of membrane proteins. 
A few archaeal sequences are also present within this 
family.
Length=168

 Score = 89.6 bits (223),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 52/169 (31%), Positives = 91/169 (54%), Gaps = 7/169 (4%)

Query  15   RAILDLKNQRDKLRQHQKRITVLTDRETAIARECLARDDRRRALLALRRKKYQETLLSKT  74
             AI  L+    KL + Q+ +    ++     ++   + ++  ALL L++KK  E  L + 
Sbjct  1    EAIRSLRKAIRKLDKKQESLEKKIEKLELEIKKLAKKGNKDAALLLLKQKKRYEKQLDQL  60

Query  75   DAQLEQLEHLTSQVEFSLVQKDVLFGLQQGTKVLQAINKEMGGIEAVEKLMGETEEARAY  134
            D QL  LE     +E +   ++VL  ++QG K ++A+NK M  I+ ++KLM E E+    
Sbjct  61   DGQLSNLEQQRMAIENAKSNQEVLNAMKQGAKAMKAMNKLM-DIDKIDKLMDEIEDQMEK  119

Query  135  QEEISQMLAGQL---SNQDEDEVENELERLRQE---TEAITLPNVPTAP  177
             +EIS+ML+  L     +DE+E++ EL+ L  E    E++ LP+ P+  
Sbjct  120  ADEISEMLSDPLDDADEEDEEELDAELDALLDEIGDEESVELPSAPSGE  168



Lambda      K        H        a         alpha
   0.310    0.126    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00007189

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460896 pfam03357, Snf7, Snf7. This family of proteins are inv...  89.6    3e-23


>CDD:460896 pfam03357, Snf7, Snf7.  This family of proteins are involved 
in protein sorting and transport from the endosome to the vacuole/lysosome 
in eukaryotic cells. Vacuoles/lysosomes play 
an important role in the degradation of both lipids and cellular 
proteins. In order to perform this degradative function, 
vacuoles/lysosomes contain numerous hydrolases which have 
been transported in the form of inactive precursors via the 
biosynthetic pathway and are proteolytically activated upon 
delivery to the vacuole/lysosome. The delivery of transmembrane 
proteins, such as activated cell surface receptors to the 
lumen of the vacuole/lysosome, either for degradation/downregulation, 
or in the case of hydrolases, for proper localization, 
requires the formation of multivesicular bodies (MVBs). 
These late endosomal structures are formed by invaginating 
and budding of the limiting membrane into the lumen of the 
compartment. During this process, a subset of the endosomal 
membrane proteins is sorted into the forming vesicles. Mature 
MVBs fuse with the vacuole/lysosome, thereby releasing cargo 
containing vesicles into its hydrolytic lumen for degradation. 
Endosomal proteins that are not sorted into the intralumenal 
MVB vesicles are either recycled back to the plasma 
membrane or Golgi complex, or remain in the limiting membrane 
of the MVB and are thereby transported to the limiting membrane 
of the vacuole/lysosome as a consequence of fusion. Therefore, 
the MVB sorting pathway plays a critical role in the 
decision between recycling and degradation of membrane proteins. 
A few archaeal sequences are also present within this 
family.
Length=168

 Score = 89.6 bits (223),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 52/169 (31%), Positives = 91/169 (54%), Gaps = 7/169 (4%)

Query  15   RAILDLKNQRDKLRQHQKRITVLTDRETAIARECLARDDRRRALLALRRKKYQETLLSKT  74
             AI  L+    KL + Q+ +    ++     ++   + ++  ALL L++KK  E  L + 
Sbjct  1    EAIRSLRKAIRKLDKKQESLEKKIEKLELEIKKLAKKGNKDAALLLLKQKKRYEKQLDQL  60

Query  75   DAQLEQLEHLTSQVEFSLVQKDVLFGLQQGTKVLQAINKEMGGIEAVEKLMGETEEARAY  134
            D QL  LE     +E +   ++VL  ++QG K ++A+NK M  I+ ++KLM E E+    
Sbjct  61   DGQLSNLEQQRMAIENAKSNQEVLNAMKQGAKAMKAMNKLM-DIDKIDKLMDEIEDQMEK  119

Query  135  QEEISQMLAGQL---SNQDEDEVENELERLRQE---TEAITLPNVPTAP  177
             +EIS+ML+  L     +DE+E++ EL+ L  E    E++ LP+ P+  
Sbjct  120  ADEISEMLSDPLDDADEEDEEELDAELDALLDEIGDEESVELPSAPSGE  168



Lambda      K        H        a         alpha
   0.310    0.126    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00007190

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  85.4    3e-21
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  61.1    2e-12


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 85.4 bits (212),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 47/106 (44%), Positives = 60/106 (57%), Gaps = 17/106 (16%)

Query  216  AFELLYSLGAVDDYAKLTNPLGVRMAELALDPMLAKVLLSARSFNCLSEILSIAAMISLQ  275
            A ELLY LGA+D+  +LT PLG +MAEL LDP LAK+LL+A    CL E+L+I A +S  
Sbjct  1    ALELLYYLGALDEDGELT-PLGRKMAELPLDPRLAKMLLAAAELGCLDEVLTIVAALS-V  58

Query  276  GSIWVQ-------------HEGDKKSVESSRRKFAVE--EGDHLTY  306
               +VQ                 + + E +R KFA    EGDHLT 
Sbjct  59   RDPFVQPNFLDPRSAAKAARRRRRAADEKARAKFARLDLEGDHLTL  104


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 61.1 bits (149),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 28/133 (21%)

Query  21   VKTVFDIHLQEGDGDILVFLTGREEIETTIQLITERAATLHPKTPALLPLPLYSGLTTDQ  80
            ++ + ++  +E  G +L+F   ++ +E  + L  E                L+  L+ ++
Sbjct  3    LEALLELLKKERGGKVLIFSQTKKTLEAELLLEKEGIKVA----------RLHGDLSQEE  52

Query  81   QMYVFEPAPENTRKVIVSTNIAEASVTINGIVYVVDCGFAKLRAYNPSTGIETLTAVPIS  140
            +  + E   +    V+V+T++AE  + +  +  V++        Y+      +       
Sbjct  53   REEILEDFRKGKIDVLVATDVAERGLDLPDVDLVIN--------YDLPWNPASY------  98

Query  141  KAAAVQRAGRAGR  153
                +QR GRAGR
Sbjct  99   ----IQRIGRAGR  107



Lambda      K        H        a         alpha
   0.320    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00001484

Length=217
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460896 pfam03357, Snf7, Snf7. This family of proteins are inv...  90.8    2e-23


>CDD:460896 pfam03357, Snf7, Snf7.  This family of proteins are involved 
in protein sorting and transport from the endosome to the vacuole/lysosome 
in eukaryotic cells. Vacuoles/lysosomes play 
an important role in the degradation of both lipids and cellular 
proteins. In order to perform this degradative function, 
vacuoles/lysosomes contain numerous hydrolases which have 
been transported in the form of inactive precursors via the 
biosynthetic pathway and are proteolytically activated upon 
delivery to the vacuole/lysosome. The delivery of transmembrane 
proteins, such as activated cell surface receptors to the 
lumen of the vacuole/lysosome, either for degradation/downregulation, 
or in the case of hydrolases, for proper localization, 
requires the formation of multivesicular bodies (MVBs). 
These late endosomal structures are formed by invaginating 
and budding of the limiting membrane into the lumen of the 
compartment. During this process, a subset of the endosomal 
membrane proteins is sorted into the forming vesicles. Mature 
MVBs fuse with the vacuole/lysosome, thereby releasing cargo 
containing vesicles into its hydrolytic lumen for degradation. 
Endosomal proteins that are not sorted into the intralumenal 
MVB vesicles are either recycled back to the plasma 
membrane or Golgi complex, or remain in the limiting membrane 
of the MVB and are thereby transported to the limiting membrane 
of the vacuole/lysosome as a consequence of fusion. Therefore, 
the MVB sorting pathway plays a critical role in the 
decision between recycling and degradation of membrane proteins. 
A few archaeal sequences are also present within this 
family.
Length=168

 Score = 90.8 bits (226),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 52/169 (31%), Positives = 91/169 (54%), Gaps = 7/169 (4%)

Query  24   RAILDLKNQRDKLRQHQKRITVLTDRETAIARECLARDDRRRALLALRRKKYQETLLSKT  83
             AI  L+    KL + Q+ +    ++     ++   + ++  ALL L++KK  E  L + 
Sbjct  1    EAIRSLRKAIRKLDKKQESLEKKIEKLELEIKKLAKKGNKDAALLLLKQKKRYEKQLDQL  60

Query  84   DAQLEQLEHLTSQVEFSLVQKDVLFGLQQGTKVLQAINKEMGGIEAVEKLMGETEEARAY  143
            D QL  LE     +E +   ++VL  ++QG K ++A+NK M  I+ ++KLM E E+    
Sbjct  61   DGQLSNLEQQRMAIENAKSNQEVLNAMKQGAKAMKAMNKLM-DIDKIDKLMDEIEDQMEK  119

Query  144  QEEISQMLAGQL---SNQDEDEVENELERLRQE---TEAITLPNVPTAP  186
             +EIS+ML+  L     +DE+E++ EL+ L  E    E++ LP+ P+  
Sbjct  120  ADEISEMLSDPLDDADEEDEEELDAELDALLDEIGDEESVELPSAPSGE  168



Lambda      K        H        a         alpha
   0.313    0.128    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00001485

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.120    0.303    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00001486

Length=217
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460896 pfam03357, Snf7, Snf7. This family of proteins are inv...  90.8    2e-23


>CDD:460896 pfam03357, Snf7, Snf7.  This family of proteins are involved 
in protein sorting and transport from the endosome to the vacuole/lysosome 
in eukaryotic cells. Vacuoles/lysosomes play 
an important role in the degradation of both lipids and cellular 
proteins. In order to perform this degradative function, 
vacuoles/lysosomes contain numerous hydrolases which have 
been transported in the form of inactive precursors via the 
biosynthetic pathway and are proteolytically activated upon 
delivery to the vacuole/lysosome. The delivery of transmembrane 
proteins, such as activated cell surface receptors to the 
lumen of the vacuole/lysosome, either for degradation/downregulation, 
or in the case of hydrolases, for proper localization, 
requires the formation of multivesicular bodies (MVBs). 
These late endosomal structures are formed by invaginating 
and budding of the limiting membrane into the lumen of the 
compartment. During this process, a subset of the endosomal 
membrane proteins is sorted into the forming vesicles. Mature 
MVBs fuse with the vacuole/lysosome, thereby releasing cargo 
containing vesicles into its hydrolytic lumen for degradation. 
Endosomal proteins that are not sorted into the intralumenal 
MVB vesicles are either recycled back to the plasma 
membrane or Golgi complex, or remain in the limiting membrane 
of the MVB and are thereby transported to the limiting membrane 
of the vacuole/lysosome as a consequence of fusion. Therefore, 
the MVB sorting pathway plays a critical role in the 
decision between recycling and degradation of membrane proteins. 
A few archaeal sequences are also present within this 
family.
Length=168

 Score = 90.8 bits (226),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 52/169 (31%), Positives = 91/169 (54%), Gaps = 7/169 (4%)

Query  24   RAILDLKNQRDKLRQHQKRITVLTDRETAIARECLARDDRRRALLALRRKKYQETLLSKT  83
             AI  L+    KL + Q+ +    ++     ++   + ++  ALL L++KK  E  L + 
Sbjct  1    EAIRSLRKAIRKLDKKQESLEKKIEKLELEIKKLAKKGNKDAALLLLKQKKRYEKQLDQL  60

Query  84   DAQLEQLEHLTSQVEFSLVQKDVLFGLQQGTKVLQAINKEMGGIEAVEKLMGETEEARAY  143
            D QL  LE     +E +   ++VL  ++QG K ++A+NK M  I+ ++KLM E E+    
Sbjct  61   DGQLSNLEQQRMAIENAKSNQEVLNAMKQGAKAMKAMNKLM-DIDKIDKLMDEIEDQMEK  119

Query  144  QEEISQMLAGQL---SNQDEDEVENELERLRQE---TEAITLPNVPTAP  186
             +EIS+ML+  L     +DE+E++ EL+ L  E    E++ LP+ P+  
Sbjct  120  ADEISEMLSDPLDDADEEDEEELDAELDALLDEIGDEESVELPSAPSGE  168



Lambda      K        H        a         alpha
   0.313    0.128    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00007191

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  85.0    1e-20
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  59.5    1e-11


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 85.0 bits (211),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 47/106 (44%), Positives = 60/106 (57%), Gaps = 17/106 (16%)

Query  339  AFELLYSLGAVDDYAKLTNPLGVRMAELALDPMLAKVLLSARSFNCLSEILSIAAMISLQ  398
            A ELLY LGA+D+  +LT PLG +MAEL LDP LAK+LL+A    CL E+L+I A +S  
Sbjct  1    ALELLYYLGALDEDGELT-PLGRKMAELPLDPRLAKMLLAAAELGCLDEVLTIVAALS-V  58

Query  399  GSIWVQ-------------HEGDKKSVESSRRKFAVE--EGDHLTY  429
               +VQ                 + + E +R KFA    EGDHLT 
Sbjct  59   RDPFVQPNFLDPRSAAKAARRRRRAADEKARAKFARLDLEGDHLTL  104


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 59.5 bits (145),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 28/133 (21%)

Query  144  VKTVFDIHLQEGDGDILVFLTGREEIETTIQLITERAATLHPKTPALLPLPLYSGLTTDQ  203
            ++ + ++  +E  G +L+F   ++ +E  + L  E                L+  L+ ++
Sbjct  3    LEALLELLKKERGGKVLIFSQTKKTLEAELLLEKEGIKVA----------RLHGDLSQEE  52

Query  204  QMYVFEPAPENTRKVIVSTNIAEASVTINGIVYVVDCGFAKLRAYNPSTGIETLTAVPIS  263
            +  + E   +    V+V+T++AE  + +  +  V++        Y+      +       
Sbjct  53   REEILEDFRKGKIDVLVATDVAERGLDLPDVDLVIN--------YDLPWNPASY------  98

Query  264  KAAAVQRAGRAGR  276
                +QR GRAGR
Sbjct  99   ----IQRIGRAGR  107



Lambda      K        H        a         alpha
   0.321    0.137    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00001487

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  85.0    1e-20
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  59.5    1e-11


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 85.0 bits (211),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 47/106 (44%), Positives = 60/106 (57%), Gaps = 17/106 (16%)

Query  339  AFELLYSLGAVDDYAKLTNPLGVRMAELALDPMLAKVLLSARSFNCLSEILSIAAMISLQ  398
            A ELLY LGA+D+  +LT PLG +MAEL LDP LAK+LL+A    CL E+L+I A +S  
Sbjct  1    ALELLYYLGALDEDGELT-PLGRKMAELPLDPRLAKMLLAAAELGCLDEVLTIVAALS-V  58

Query  399  GSIWVQ-------------HEGDKKSVESSRRKFAVE--EGDHLTY  429
               +VQ                 + + E +R KFA    EGDHLT 
Sbjct  59   RDPFVQPNFLDPRSAAKAARRRRRAADEKARAKFARLDLEGDHLTL  104


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 59.5 bits (145),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 28/133 (21%)

Query  144  VKTVFDIHLQEGDGDILVFLTGREEIETTIQLITERAATLHPKTPALLPLPLYSGLTTDQ  203
            ++ + ++  +E  G +L+F   ++ +E  + L  E                L+  L+ ++
Sbjct  3    LEALLELLKKERGGKVLIFSQTKKTLEAELLLEKEGIKVA----------RLHGDLSQEE  52

Query  204  QMYVFEPAPENTRKVIVSTNIAEASVTINGIVYVVDCGFAKLRAYNPSTGIETLTAVPIS  263
            +  + E   +    V+V+T++AE  + +  +  V++        Y+      +       
Sbjct  53   REEILEDFRKGKIDVLVATDVAERGLDLPDVDLVIN--------YDLPWNPASY------  98

Query  264  KAAAVQRAGRAGR  276
                +QR GRAGR
Sbjct  99   ----IQRIGRAGR  107



Lambda      K        H        a         alpha
   0.321    0.137    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00007192

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  63.4    4e-13
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  59.5    1e-11


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 63.4 bits (155),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query  339  AFELLYSLGAVDDYAKLTNPLGVRMAELALDPMLAKVLLSARSFNCLSET  388
            A ELLY LGA+D+  +LT PLG +MAEL LDP LAK+LL+A    CL E 
Sbjct  1    ALELLYYLGALDEDGELT-PLGRKMAELPLDPRLAKMLLAAAELGCLDEV  49


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 59.5 bits (145),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 28/133 (21%)

Query  144  VKTVFDIHLQEGDGDILVFLTGREEIETTIQLITERAATLHPKTPALLPLPLYSGLTTDQ  203
            ++ + ++  +E  G +L+F   ++ +E  + L  E                L+  L+ ++
Sbjct  3    LEALLELLKKERGGKVLIFSQTKKTLEAELLLEKEGIKVA----------RLHGDLSQEE  52

Query  204  QMYVFEPAPENTRKVIVSTNIAEASVTINGIVYVVDCGFAKLRAYNPSTGIETLTAVPIS  263
            +  + E   +    V+V+T++AE  + +  +  V++        Y+      +       
Sbjct  53   REEILEDFRKGKIDVLVATDVAERGLDLPDVDLVIN--------YDLPWNPASY------  98

Query  264  KAAAVQRAGRAGR  276
                +QR GRAGR
Sbjct  99   ----IQRIGRAGR  107



Lambda      K        H        a         alpha
   0.321    0.138    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500176124


Query= TCONS_00007193

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  84.2    2e-20
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  59.5    1e-11


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 84.2 bits (209),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 47/106 (44%), Positives = 60/106 (57%), Gaps = 17/106 (16%)

Query  339  AFELLYSLGAVDDYAKLTNPLGVRMAELALDPMLAKVLLSARSFNCLSEILSIAAMISLQ  398
            A ELLY LGA+D+  +LT PLG +MAEL LDP LAK+LL+A    CL E+L+I A +S  
Sbjct  1    ALELLYYLGALDEDGELT-PLGRKMAELPLDPRLAKMLLAAAELGCLDEVLTIVAALS-V  58

Query  399  GSIWVQ-------------HEGDKKSVESSRRKFAVE--EGDHLTY  429
               +VQ                 + + E +R KFA    EGDHLT 
Sbjct  59   RDPFVQPNFLDPRSAAKAARRRRRAADEKARAKFARLDLEGDHLTL  104


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 59.5 bits (145),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 28/133 (21%)

Query  144  VKTVFDIHLQEGDGDILVFLTGREEIETTIQLITERAATLHPKTPALLPLPLYSGLTTDQ  203
            ++ + ++  +E  G +L+F   ++ +E  + L  E                L+  L+ ++
Sbjct  3    LEALLELLKKERGGKVLIFSQTKKTLEAELLLEKEGIKVA----------RLHGDLSQEE  52

Query  204  QMYVFEPAPENTRKVIVSTNIAEASVTINGIVYVVDCGFAKLRAYNPSTGIETLTAVPIS  263
            +  + E   +    V+V+T++AE  + +  +  V++        Y+      +       
Sbjct  53   REEILEDFRKGKIDVLVATDVAERGLDLPDVDLVIN--------YDLPWNPASY------  98

Query  264  KAAAVQRAGRAGR  276
                +QR GRAGR
Sbjct  99   ----IQRIGRAGR  107



Lambda      K        H        a         alpha
   0.321    0.137    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00007194

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427018 pfam02845, CUE, CUE domain. CUE domains have been show...  54.0    4e-11


>CDD:427018 pfam02845, CUE, CUE domain.  CUE domains have been shown to bind 
ubiquitin. It has been suggested that CUE domains are related 
to pfam00627 and this has been confirmed by the structure 
of the domain. CUE domains also occur in two protein of 
the IL-1 signal transduction pathway, tollip and TAB2.
Length=42

 Score = 54.0 bits (131),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 28/42 (67%), Gaps = 0/42 (0%)

Query  65   RQQAENTLKEAFPTIEASVIRAVLVASNWDIERAFHALLGMT  106
             +Q   TLKE FP ++  VIRAVL ASN ++E A +ALL  +
Sbjct  1    NEQMLETLKEMFPDLDEEVIRAVLEASNGNVEAAINALLEGS  42



Lambda      K        H        a         alpha
   0.311    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0725    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00001488

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00001489

Length=294


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00007195

Length=105
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427018 pfam02845, CUE, CUE domain. CUE domains have been show...  52.5    1e-11


>CDD:427018 pfam02845, CUE, CUE domain.  CUE domains have been shown to bind 
ubiquitin. It has been suggested that CUE domains are related 
to pfam00627 and this has been confirmed by the structure 
of the domain. CUE domains also occur in two protein of 
the IL-1 signal transduction pathway, tollip and TAB2.
Length=42

 Score = 52.5 bits (127),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 21/41 (51%), Positives = 27/41 (66%), Gaps = 0/41 (0%)

Query  65   RQQAENTLKEAFPTIEASVIRAVLVASNWDIERAFHALLGM  105
             +Q   TLKE FP ++  VIRAVL ASN ++E A +ALL  
Sbjct  1    NEQMLETLKEMFPDLDEEVIRAVLEASNGNVEAAINALLEG  41



Lambda      K        H        a         alpha
   0.307    0.124    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00001490

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427018 pfam02845, CUE, CUE domain. CUE domains have been show...  54.0    4e-11


>CDD:427018 pfam02845, CUE, CUE domain.  CUE domains have been shown to bind 
ubiquitin. It has been suggested that CUE domains are related 
to pfam00627 and this has been confirmed by the structure 
of the domain. CUE domains also occur in two protein of 
the IL-1 signal transduction pathway, tollip and TAB2.
Length=42

 Score = 54.0 bits (131),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 28/42 (67%), Gaps = 0/42 (0%)

Query  65   RQQAENTLKEAFPTIEASVIRAVLVASNWDIERAFHALLGMT  106
             +Q   TLKE FP ++  VIRAVL ASN ++E A +ALL  +
Sbjct  1    NEQMLETLKEMFPDLDEEVIRAVLEASNGNVEAAINALLEGS  42



Lambda      K        H        a         alpha
   0.311    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00001491

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00007196

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00001492

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) fa...  59.5    5e-13


>CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.  
This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=116

 Score = 59.5 bits (144),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 23/116 (20%), Positives = 46/116 (40%), Gaps = 0/116 (0%)

Query  23   LAQIARIEKKTFPANEAFPFGEDLWKKKPNTRVLYAVSTASGVPRRLVAYAVYVRQKGVA  82
            L  +  +  + FP        + L     +    + V+   G      + ++   +  V 
Sbjct  1    LEALYELLSEEFPEPWPDEPLDLLEDWDEDASEGFFVAEEDGELVGFASLSIIDDEPPVG  60

Query  83   LLHKVCVVEAFRRQGIGMQLMNYIRQRLQKEGCQYIQLWVDKAREPARSLYNRSGF  138
             +  + V   +R +GIG  L+  + +  ++ GC+ I L V      A +LY + GF
Sbjct  61   EIEGLAVAPEYRGKGIGTALLQALLEWARERGCERIFLEVAADNLAAIALYEKLGF  116



Lambda      K        H        a         alpha
   0.323    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00001493

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) fa...  59.5    4e-12


>CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.  
This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=116

 Score = 59.5 bits (144),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 23/116 (20%), Positives = 46/116 (40%), Gaps = 0/116 (0%)

Query  91   LAQIARIEKKTFPANEAFPFGEDLWKKKPNTRVLYAVSTASGVPRRLVAYAVYVRQKGVA  150
            L  +  +  + FP        + L     +    + V+   G      + ++   +  V 
Sbjct  1    LEALYELLSEEFPEPWPDEPLDLLEDWDEDASEGFFVAEEDGELVGFASLSIIDDEPPVG  60

Query  151  LLHKVCVVEAFRRQGIGMQLMNYIRQRLQKEGCQYIQLWVDKAREPARSLYNRSGF  206
             +  + V   +R +GIG  L+  + +  ++ GC+ I L V      A +LY + GF
Sbjct  61   EIEGLAVAPEYRGKGIGTALLQALLEWARERGCERIFLEVAADNLAAIALYEKLGF  116



Lambda      K        H        a         alpha
   0.325    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00001494

Length=973


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1241723252


Query= TCONS_00001495

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  182     3e-56


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 182 bits (463),  Expect = 3e-56, Method: Composition-based stats.
 Identities = 72/141 (51%), Positives = 90/141 (64%), Gaps = 8/141 (6%)

Query  39   ANAGDSRSVLGVKGRA-KPLSFDHKPQNEGEKARISAAGGFVD-FGRVNGNLALSRAIGD  96
            AN GDSR+VL   G A K L+ DHKP +E E+ RI AAGGFV   GRVNG LA+SRA GD
Sbjct  115  ANVGDSRAVLCRNGNAIKRLTKDHKPSDEDERRRIRAAGGFVSRNGRVNGVLAVSRAFGD  174

Query  97   FEFKKSPELSPEQQIVTAYPDVTVHEVTDDDEFLVIACDGIWDCQSSQSVVEFVRRGIAA  156
            FE K      P +Q V+A PD+T H +T+DDEFL++ACDG+WD  S Q VV+ VR  ++ 
Sbjct  175  FELK------PGEQAVSAEPDITSHTITEDDEFLILACDGLWDVLSDQEVVDLVRSELSD  228

Query  157  KQELYRICENMMDNCLASNSE  177
                    E + D  +A  SE
Sbjct  229  GGSPMEAAEELRDEAIAYGSE  249



Lambda      K        H        a         alpha
   0.311    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00001497

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  272     2e-90


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 272 bits (698),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 119/262 (45%), Positives = 160/262 (61%), Gaps = 18/262 (7%)

Query  24   YGLSAMQGWRISMEDAHAAVLDLQAKSTGGSEKPTDPDKRLAFFGVYDGHGGDKVALFAG  83
             G   MQGWR SMEDAH  + +L + S              +FF V+DGHGG + A + G
Sbjct  3    LGGPRMQGWRKSMEDAHIDLPNLNSSS---------GKDSWSFFAVFDGHGGSEAAKYCG  53

Query  84   ENVHKIVAKQEAFAKG-DIEQALKDGFLATDRAILEDPKYEEEVSGCTAAVSVISKNKIW  142
            +++H I+A + +F +G  +E AL+  FL     +L   + E+  SGCTA V++IS NK++
Sbjct  54   KHLHTILALRRSFLEGEKLEDALRKSFLEDTDEVLRSAEKEDLDSGCTAVVALISGNKLY  113

Query  143  VANAGDSRSVLGVKGRA-KPLSFDHKPQNEGEKARISAAGGFVD-FGRVNGNLALSRAIG  200
            VAN GDSR+VL   G A K L+ DHKP +E E+ RI AAGGFV   GRVNG LA+SRA G
Sbjct  114  VANVGDSRAVLCRNGNAIKRLTKDHKPSDEDERRRIRAAGGFVSRNGRVNGVLAVSRAFG  173

Query  201  DFEFKKSPELSPEQQIVTAYPDVTVHEVTDDDEFLVIACDGIWDCQSSQSVVEFVRRGIA  260
            DFE K      P +Q V+A PD+T H +T+DDEFL++ACDG+WD  S Q VV+ VR  ++
Sbjct  174  DFELK------PGEQAVSAEPDITSHTITEDDEFLILACDGLWDVLSDQEVVDLVRSELS  227

Query  261  AKQELYRICENMMDNCLASNSE  282
                     E + D  +A  SE
Sbjct  228  DGGSPMEAAEELRDEAIAYGSE  249



Lambda      K        H        a         alpha
   0.310    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00001496

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  205     7e-66


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 205 bits (523),  Expect = 7e-66, Method: Composition-based stats.
 Identities = 84/163 (52%), Positives = 107/163 (66%), Gaps = 8/163 (5%)

Query  47   YEEEVSGCTAAVSVISKNKIWVANAGDSRSVLGVKGRA-KPLSFDHKPQNEGEKARISAA  105
             E+  SGCTA V++IS NK++VAN GDSR+VL   G A K L+ DHKP +E E+ RI AA
Sbjct  93   KEDLDSGCTAVVALISGNKLYVANVGDSRAVLCRNGNAIKRLTKDHKPSDEDERRRIRAA  152

Query  106  GGFVD-FGRVNGNLALSRAIGDFEFKKSPELSPEQQIVTAYPDVTVHEVTDDDEFLVIAC  164
            GGFV   GRVNG LA+SRA GDFE K      P +Q V+A PD+T H +T+DDEFL++AC
Sbjct  153  GGFVSRNGRVNGVLAVSRAFGDFELK------PGEQAVSAEPDITSHTITEDDEFLILAC  206

Query  165  DGIWDCQSSQSVVEFVRRGIAAKQELYRICENMMDNCLASNSE  207
            DG+WD  S Q VV+ VR  ++         E + D  +A  SE
Sbjct  207  DGLWDVLSDQEVVDLVRSELSDGGSPMEAAEELRDEAIAYGSE  249



Lambda      K        H        a         alpha
   0.316    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00001498

Length=458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  272     4e-90


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 272 bits (698),  Expect = 4e-90, Method: Composition-based stats.
 Identities = 119/262 (45%), Positives = 160/262 (61%), Gaps = 18/262 (7%)

Query  24   YGLSAMQGWRISMEDAHAAVLDLQAKSTGGSEKPTDPDKRLAFFGVYDGHGGDKVALFAG  83
             G   MQGWR SMEDAH  + +L + S              +FF V+DGHGG + A + G
Sbjct  3    LGGPRMQGWRKSMEDAHIDLPNLNSSS---------GKDSWSFFAVFDGHGGSEAAKYCG  53

Query  84   ENVHKIVAKQEAFAKG-DIEQALKDGFLATDRAILEDPKYEEEVSGCTAAVSVISKNKIW  142
            +++H I+A + +F +G  +E AL+  FL     +L   + E+  SGCTA V++IS NK++
Sbjct  54   KHLHTILALRRSFLEGEKLEDALRKSFLEDTDEVLRSAEKEDLDSGCTAVVALISGNKLY  113

Query  143  VANAGDSRSVLGVKGRA-KPLSFDHKPQNEGEKARISAAGGFVD-FGRVNGNLALSRAIG  200
            VAN GDSR+VL   G A K L+ DHKP +E E+ RI AAGGFV   GRVNG LA+SRA G
Sbjct  114  VANVGDSRAVLCRNGNAIKRLTKDHKPSDEDERRRIRAAGGFVSRNGRVNGVLAVSRAFG  173

Query  201  DFEFKKSPELSPEQQIVTAYPDVTVHEVTDDDEFLVIACDGIWDCQSSQSVVEFVRRGIA  260
            DFE K      P +Q V+A PD+T H +T+DDEFL++ACDG+WD  S Q VV+ VR  ++
Sbjct  174  DFELK------PGEQAVSAEPDITSHTITEDDEFLILACDGLWDVLSDQEVVDLVRSELS  227

Query  261  AKQELYRICENMMDNCLASNSE  282
                     E + D  +A  SE
Sbjct  228  DGGSPMEAAEELRDEAIAYGSE  249



Lambda      K        H        a         alpha
   0.310    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 564403072


Query= TCONS_00001499

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  271     6e-90


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 271 bits (694),  Expect = 6e-90, Method: Composition-based stats.
 Identities = 119/262 (45%), Positives = 160/262 (61%), Gaps = 18/262 (7%)

Query  17   YGLSAMQGWRISMEDAHAAVLDLQAKSTGGSEKPTDPDKRLAFFGVYDGHGGDKVALFAG  76
             G   MQGWR SMEDAH  + +L + S              +FF V+DGHGG + A + G
Sbjct  3    LGGPRMQGWRKSMEDAHIDLPNLNSSS---------GKDSWSFFAVFDGHGGSEAAKYCG  53

Query  77   ENVHKIVAKQEAFAKG-DIEQALKDGFLATDRAILEDPKYEEEVSGCTAAVSVISKNKIW  135
            +++H I+A + +F +G  +E AL+  FL     +L   + E+  SGCTA V++IS NK++
Sbjct  54   KHLHTILALRRSFLEGEKLEDALRKSFLEDTDEVLRSAEKEDLDSGCTAVVALISGNKLY  113

Query  136  VANAGDSRSVLGVKGRA-KPLSFDHKPQNEGEKARISAAGGFVD-FGRVNGNLALSRAIG  193
            VAN GDSR+VL   G A K L+ DHKP +E E+ RI AAGGFV   GRVNG LA+SRA G
Sbjct  114  VANVGDSRAVLCRNGNAIKRLTKDHKPSDEDERRRIRAAGGFVSRNGRVNGVLAVSRAFG  173

Query  194  DFEFKKSPELSPEQQIVTAYPDVTVHEVTDDDEFLVIACDGIWDCQSSQSVVEFVRRGIA  253
            DFE K      P +Q V+A PD+T H +T+DDEFL++ACDG+WD  S Q VV+ VR  ++
Sbjct  174  DFELK------PGEQAVSAEPDITSHTITEDDEFLILACDGLWDVLSDQEVVDLVRSELS  227

Query  254  AKQELYRICENMMDNCLASNSE  275
                     E + D  +A  SE
Sbjct  228  DGGSPMEAAEELRDEAIAYGSE  249



Lambda      K        H        a         alpha
   0.312    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 519925656


Query= TCONS_00001500

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  265     2e-87


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 265 bits (679),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 118/262 (45%), Positives = 159/262 (61%), Gaps = 19/262 (7%)

Query  17   YGLSAMQGWRISMEDAHAAVLDLQAKSTGGSEKPTDPDKRLAFFGVYDGHGGDKVALFAG  76
             G   MQGWR SMEDAH  + +L + S              +FF V+DGHGG + A + G
Sbjct  3    LGGPRMQGWRKSMEDAHIDLPNLNSSS---------GKDSWSFFAVFDGHGGSEAAKYCG  53

Query  77   ENVHKIVAKQEAFAKG-DIEQALKDGFLATDRAILEDPKYEEEVSGCTAAVSVISKNKIW  135
            +++H I+A + +F +G  +E AL+  FL     +L   + E+  SGCTA V++IS NK++
Sbjct  54   KHLHTILALRRSFLEGEKLEDALRKSFLEDTDEVLRSAEKEDLDSGCTAVVALISGNKLY  113

Query  136  -ANAGDSRSVLGVKGRA-KPLSFDHKPQNEGEKARISAAGGFVD-FGRVNGNLALSRAIG  192
             AN GDSR+VL   G A K L+ DHKP +E E+ RI AAGGFV   GRVNG LA+SRA G
Sbjct  114  VANVGDSRAVLCRNGNAIKRLTKDHKPSDEDERRRIRAAGGFVSRNGRVNGVLAVSRAFG  173

Query  193  DFEFKKSPELSPEQQIVTAYPDVTVHEVTDDDEFLVIACDGIWDCQSSQSVVEFVRRGIA  252
            DFE K      P +Q V+A PD+T H +T+DDEFL++ACDG+WD  S Q VV+ VR  ++
Sbjct  174  DFELK------PGEQAVSAEPDITSHTITEDDEFLILACDGLWDVLSDQEVVDLVRSELS  227

Query  253  AKQELYRICENMMDNCLASNSE  274
                     E + D  +A  SE
Sbjct  228  DGGSPMEAAEELRDEAIAYGSE  249



Lambda      K        H        a         alpha
   0.311    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00001502

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  272     3e-90


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 272 bits (697),  Expect = 3e-90, Method: Composition-based stats.
 Identities = 119/262 (45%), Positives = 160/262 (61%), Gaps = 18/262 (7%)

Query  17   YGLSAMQGWRISMEDAHAAVLDLQAKSTGGSEKPTDPDKRLAFFGVYDGHGGDKVALFAG  76
             G   MQGWR SMEDAH  + +L + S              +FF V+DGHGG + A + G
Sbjct  3    LGGPRMQGWRKSMEDAHIDLPNLNSSS---------GKDSWSFFAVFDGHGGSEAAKYCG  53

Query  77   ENVHKIVAKQEAFAKG-DIEQALKDGFLATDRAILEDPKYEEEVSGCTAAVSVISKNKIW  135
            +++H I+A + +F +G  +E AL+  FL     +L   + E+  SGCTA V++IS NK++
Sbjct  54   KHLHTILALRRSFLEGEKLEDALRKSFLEDTDEVLRSAEKEDLDSGCTAVVALISGNKLY  113

Query  136  VANAGDSRSVLGVKGRA-KPLSFDHKPQNEGEKARISAAGGFVD-FGRVNGNLALSRAIG  193
            VAN GDSR+VL   G A K L+ DHKP +E E+ RI AAGGFV   GRVNG LA+SRA G
Sbjct  114  VANVGDSRAVLCRNGNAIKRLTKDHKPSDEDERRRIRAAGGFVSRNGRVNGVLAVSRAFG  173

Query  194  DFEFKKSPELSPEQQIVTAYPDVTVHEVTDDDEFLVIACDGIWDCQSSQSVVEFVRRGIA  253
            DFE K      P +Q V+A PD+T H +T+DDEFL++ACDG+WD  S Q VV+ VR  ++
Sbjct  174  DFELK------PGEQAVSAEPDITSHTITEDDEFLILACDGLWDVLSDQEVVDLVRSELS  227

Query  254  AKQELYRICENMMDNCLASNSE  275
                     E + D  +A  SE
Sbjct  228  DGGSPMEAAEELRDEAIAYGSE  249



Lambda      K        H        a         alpha
   0.311    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00001503

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  272     3e-90


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 272 bits (697),  Expect = 3e-90, Method: Composition-based stats.
 Identities = 119/262 (45%), Positives = 160/262 (61%), Gaps = 18/262 (7%)

Query  17   YGLSAMQGWRISMEDAHAAVLDLQAKSTGGSEKPTDPDKRLAFFGVYDGHGGDKVALFAG  76
             G   MQGWR SMEDAH  + +L + S              +FF V+DGHGG + A + G
Sbjct  3    LGGPRMQGWRKSMEDAHIDLPNLNSSS---------GKDSWSFFAVFDGHGGSEAAKYCG  53

Query  77   ENVHKIVAKQEAFAKG-DIEQALKDGFLATDRAILEDPKYEEEVSGCTAAVSVISKNKIW  135
            +++H I+A + +F +G  +E AL+  FL     +L   + E+  SGCTA V++IS NK++
Sbjct  54   KHLHTILALRRSFLEGEKLEDALRKSFLEDTDEVLRSAEKEDLDSGCTAVVALISGNKLY  113

Query  136  VANAGDSRSVLGVKGRA-KPLSFDHKPQNEGEKARISAAGGFVD-FGRVNGNLALSRAIG  193
            VAN GDSR+VL   G A K L+ DHKP +E E+ RI AAGGFV   GRVNG LA+SRA G
Sbjct  114  VANVGDSRAVLCRNGNAIKRLTKDHKPSDEDERRRIRAAGGFVSRNGRVNGVLAVSRAFG  173

Query  194  DFEFKKSPELSPEQQIVTAYPDVTVHEVTDDDEFLVIACDGIWDCQSSQSVVEFVRRGIA  253
            DFE K      P +Q V+A PD+T H +T+DDEFL++ACDG+WD  S Q VV+ VR  ++
Sbjct  174  DFELK------PGEQAVSAEPDITSHTITEDDEFLILACDGLWDVLSDQEVVDLVRSELS  227

Query  254  AKQELYRICENMMDNCLASNSE  275
                     E + D  +A  SE
Sbjct  228  DGGSPMEAAEELRDEAIAYGSE  249



Lambda      K        H        a         alpha
   0.311    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00001501

Length=451
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  272     5e-90


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 272 bits (697),  Expect = 5e-90, Method: Composition-based stats.
 Identities = 119/262 (45%), Positives = 160/262 (61%), Gaps = 18/262 (7%)

Query  17   YGLSAMQGWRISMEDAHAAVLDLQAKSTGGSEKPTDPDKRLAFFGVYDGHGGDKVALFAG  76
             G   MQGWR SMEDAH  + +L + S              +FF V+DGHGG + A + G
Sbjct  3    LGGPRMQGWRKSMEDAHIDLPNLNSSS---------GKDSWSFFAVFDGHGGSEAAKYCG  53

Query  77   ENVHKIVAKQEAFAKG-DIEQALKDGFLATDRAILEDPKYEEEVSGCTAAVSVISKNKIW  135
            +++H I+A + +F +G  +E AL+  FL     +L   + E+  SGCTA V++IS NK++
Sbjct  54   KHLHTILALRRSFLEGEKLEDALRKSFLEDTDEVLRSAEKEDLDSGCTAVVALISGNKLY  113

Query  136  VANAGDSRSVLGVKGRA-KPLSFDHKPQNEGEKARISAAGGFVD-FGRVNGNLALSRAIG  193
            VAN GDSR+VL   G A K L+ DHKP +E E+ RI AAGGFV   GRVNG LA+SRA G
Sbjct  114  VANVGDSRAVLCRNGNAIKRLTKDHKPSDEDERRRIRAAGGFVSRNGRVNGVLAVSRAFG  173

Query  194  DFEFKKSPELSPEQQIVTAYPDVTVHEVTDDDEFLVIACDGIWDCQSSQSVVEFVRRGIA  253
            DFE K      P +Q V+A PD+T H +T+DDEFL++ACDG+WD  S Q VV+ VR  ++
Sbjct  174  DFELK------PGEQAVSAEPDITSHTITEDDEFLILACDGLWDVLSDQEVVDLVRSELS  227

Query  254  AKQELYRICENMMDNCLASNSE  275
                     E + D  +A  SE
Sbjct  228  DGGSPMEAAEELRDEAIAYGSE  249



Lambda      K        H        a         alpha
   0.311    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 553667144


Query= TCONS_00007197

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  143     4e-42


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 143 bits (363),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 55/114 (48%), Positives = 71/114 (62%), Gaps = 7/114 (6%)

Query  2    NIGEKARISAAGGFVD-FGRVNGNLALSRAIGDFEFKKSPELSPEQQIVTAYPDVTVHEV  60
            +  E+ RI AAGGFV   GRVNG LA+SRA GDFE K      P +Q V+A PD+T H +
Sbjct  142  DEDERRRIRAAGGFVSRNGRVNGVLAVSRAFGDFELK------PGEQAVSAEPDITSHTI  195

Query  61   TDDDEFLVIACDGIWDCQSSQSVVEFVRRGIAAKQELYRICENMMDNCLASNSE  114
            T+DDEFL++ACDG+WD  S Q VV+ VR  ++         E + D  +A  SE
Sbjct  196  TEDDEFLILACDGLWDVLSDQEVVDLVRSELSDGGSPMEAAEELRDEAIAYGSE  249



Lambda      K        H        a         alpha
   0.309    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00001504

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  132     5e-39


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 132 bits (334),  Expect = 5e-39, Method: Composition-based stats.
 Identities = 57/148 (39%), Positives = 74/148 (50%), Gaps = 38/148 (26%)

Query  2    NIGEKARISAAGGFVD-FGRVNGNLALSRAIGDFEFKKSPELSPEQQIVTAYPDVTVHEV  60
            +  E+ RI AAGGFV   GRVNG LA+SRA GDFE K      P +Q V+A PD+T H +
Sbjct  142  DEDERRRIRAAGGFVSRNGRVNGVLAVSRAFGDFELK------PGEQAVSAEPDITSHTI  195

Query  61   TDDDEFLVIACDGTSFCIVGLSTITPSCCPLLMDLLVGIWDCQSSQSVVEFVRRGIAAKQ  120
            T+DDEFL++ACD                         G+WD  S Q VV+ VR  ++   
Sbjct  196  TEDDEFLILACD-------------------------GLWDVLSDQEVVDLVRSELSDGG  230

Query  121  ELYRICENMMDNCLASNSETGGVGCDNM  148
                  E + D  +A  SE      DN+
Sbjct  231  SPMEAAEELRDEAIAYGSE------DNI  252



Lambda      K        H        a         alpha
   0.319    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00007198

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like....  109     4e-29


>CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like.  This 
family includes: Cholinephosphate cytidylyltransferase; glycerol-3-phosphate 
cytidylyltransferase. It also includes putative 
adenylyltransferases, and FAD synthases.
Length=134

 Score = 109 bits (274),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 50/136 (37%), Positives = 66/136 (49%), Gaps = 9/136 (7%)

Query  173  YADGVFDLFHVGHMRQLEQAKKAFPDVYLIVGVTGDEETHKRKGLTVLSGRERAESVRHC  232
               G FD  H+GH+R LEQAK+ F D  LIVGV  DE  HK     + S  ER E +   
Sbjct  1    LFGGTFDPIHLGHLRLLEQAKELF-DEDLIVGVPSDEPPHK-LKRPLFSAEERLEMLELA  58

Query  233  KWVDEVIPDCPWIVTPEFIEKHQIDYVAHDDLPYGAA--EGDDIYAPIKAQG-----KFL  285
            KWVDEVI   PW +T E +++   D +            E D+I   +K         F+
Sbjct  59   KWVDEVIVVAPWELTRELLKELNPDVLVIGADSLLDFWYELDEILGNVKLVVVVRPVFFI  118

Query  286  VTQRTEGVSTTGIITR  301
              + T G+S+T I  R
Sbjct  119  PLKPTNGISSTDIRER  134



Lambda      K        H        a         alpha
   0.311    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595027938


Query= TCONS_00001505

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like....  109     4e-29


>CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like.  This 
family includes: Cholinephosphate cytidylyltransferase; glycerol-3-phosphate 
cytidylyltransferase. It also includes putative 
adenylyltransferases, and FAD synthases.
Length=134

 Score = 109 bits (274),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 50/136 (37%), Positives = 66/136 (49%), Gaps = 9/136 (7%)

Query  173  YADGVFDLFHVGHMRQLEQAKKAFPDVYLIVGVTGDEETHKRKGLTVLSGRERAESVRHC  232
               G FD  H+GH+R LEQAK+ F D  LIVGV  DE  HK     + S  ER E +   
Sbjct  1    LFGGTFDPIHLGHLRLLEQAKELF-DEDLIVGVPSDEPPHK-LKRPLFSAEERLEMLELA  58

Query  233  KWVDEVIPDCPWIVTPEFIEKHQIDYVAHDDLPYGAA--EGDDIYAPIKAQG-----KFL  285
            KWVDEVI   PW +T E +++   D +            E D+I   +K         F+
Sbjct  59   KWVDEVIVVAPWELTRELLKELNPDVLVIGADSLLDFWYELDEILGNVKLVVVVRPVFFI  118

Query  286  VTQRTEGVSTTGIITR  301
              + T G+S+T I  R
Sbjct  119  PLKPTNGISSTDIRER  134



Lambda      K        H        a         alpha
   0.311    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00001506

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like....  108     9e-29


>CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like.  This 
family includes: Cholinephosphate cytidylyltransferase; glycerol-3-phosphate 
cytidylyltransferase. It also includes putative 
adenylyltransferases, and FAD synthases.
Length=134

 Score = 108 bits (272),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 50/136 (37%), Positives = 66/136 (49%), Gaps = 9/136 (7%)

Query  173  YADGVFDLFHVGHMRQLEQAKKAFPDVYLIVGVTGDEETHKRKGLTVLSGRERAESVRHC  232
               G FD  H+GH+R LEQAK+ F D  LIVGV  DE  HK     + S  ER E +   
Sbjct  1    LFGGTFDPIHLGHLRLLEQAKELF-DEDLIVGVPSDEPPHK-LKRPLFSAEERLEMLELA  58

Query  233  KWVDEVIPDCPWIVTPEFIEKHQIDYVAHDDLPYGAA--EGDDIYAPIKAQG-----KFL  285
            KWVDEVI   PW +T E +++   D +            E D+I   +K         F+
Sbjct  59   KWVDEVIVVAPWELTRELLKELNPDVLVIGADSLLDFWYELDEILGNVKLVVVVRPVFFI  118

Query  286  VTQRTEGVSTTGIITR  301
              + T G+S+T I  R
Sbjct  119  PLKPTNGISSTDIRER  134



Lambda      K        H        a         alpha
   0.313    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00001507

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like....  108     5e-29


>CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like.  This 
family includes: Cholinephosphate cytidylyltransferase; glycerol-3-phosphate 
cytidylyltransferase. It also includes putative 
adenylyltransferases, and FAD synthases.
Length=134

 Score = 108 bits (273),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 50/136 (37%), Positives = 66/136 (49%), Gaps = 9/136 (7%)

Query  173  YADGVFDLFHVGHMRQLEQAKKAFPDVYLIVGVTGDEETHKRKGLTVLSGRERAESVRHC  232
               G FD  H+GH+R LEQAK+ F D  LIVGV  DE  HK     + S  ER E +   
Sbjct  1    LFGGTFDPIHLGHLRLLEQAKELF-DEDLIVGVPSDEPPHK-LKRPLFSAEERLEMLELA  58

Query  233  KWVDEVIPDCPWIVTPEFIEKHQIDYVAHDDLPYGAA--EGDDIYAPIKAQG-----KFL  285
            KWVDEVI   PW +T E +++   D +            E D+I   +K         F+
Sbjct  59   KWVDEVIVVAPWELTRELLKELNPDVLVIGADSLLDFWYELDEILGNVKLVVVVRPVFFI  118

Query  286  VTQRTEGVSTTGIITR  301
              + T G+S+T I  R
Sbjct  119  PLKPTNGISSTDIRER  134



Lambda      K        H        a         alpha
   0.312    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00007199

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like....  108     5e-29


>CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like.  This 
family includes: Cholinephosphate cytidylyltransferase; glycerol-3-phosphate 
cytidylyltransferase. It also includes putative 
adenylyltransferases, and FAD synthases.
Length=134

 Score = 108 bits (273),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 50/136 (37%), Positives = 66/136 (49%), Gaps = 9/136 (7%)

Query  173  YADGVFDLFHVGHMRQLEQAKKAFPDVYLIVGVTGDEETHKRKGLTVLSGRERAESVRHC  232
               G FD  H+GH+R LEQAK+ F D  LIVGV  DE  HK     + S  ER E +   
Sbjct  1    LFGGTFDPIHLGHLRLLEQAKELF-DEDLIVGVPSDEPPHK-LKRPLFSAEERLEMLELA  58

Query  233  KWVDEVIPDCPWIVTPEFIEKHQIDYVAHDDLPYGAA--EGDDIYAPIKAQG-----KFL  285
            KWVDEVI   PW +T E +++   D +            E D+I   +K         F+
Sbjct  59   KWVDEVIVVAPWELTRELLKELNPDVLVIGADSLLDFWYELDEILGNVKLVVVVRPVFFI  118

Query  286  VTQRTEGVSTTGIITR  301
              + T G+S+T I  R
Sbjct  119  PLKPTNGISSTDIRER  134



Lambda      K        H        a         alpha
   0.312    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00001508

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like....  109     2e-29


>CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like.  This 
family includes: Cholinephosphate cytidylyltransferase; glycerol-3-phosphate 
cytidylyltransferase. It also includes putative 
adenylyltransferases, and FAD synthases.
Length=134

 Score = 109 bits (274),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 50/136 (37%), Positives = 66/136 (49%), Gaps = 9/136 (7%)

Query  173  YADGVFDLFHVGHMRQLEQAKKAFPDVYLIVGVTGDEETHKRKGLTVLSGRERAESVRHC  232
               G FD  H+GH+R LEQAK+ F D  LIVGV  DE  HK     + S  ER E +   
Sbjct  1    LFGGTFDPIHLGHLRLLEQAKELF-DEDLIVGVPSDEPPHK-LKRPLFSAEERLEMLELA  58

Query  233  KWVDEVIPDCPWIVTPEFIEKHQIDYVAHDDLPYGAA--EGDDIYAPIKAQG-----KFL  285
            KWVDEVI   PW +T E +++   D +            E D+I   +K         F+
Sbjct  59   KWVDEVIVVAPWELTRELLKELNPDVLVIGADSLLDFWYELDEILGNVKLVVVVRPVFFI  118

Query  286  VTQRTEGVSTTGIITR  301
              + T G+S+T I  R
Sbjct  119  PLKPTNGISSTDIRER  134



Lambda      K        H        a         alpha
   0.311    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00007200

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like....  109     5e-29


>CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like.  This 
family includes: Cholinephosphate cytidylyltransferase; glycerol-3-phosphate 
cytidylyltransferase. It also includes putative 
adenylyltransferases, and FAD synthases.
Length=134

 Score = 109 bits (274),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 50/136 (37%), Positives = 66/136 (49%), Gaps = 9/136 (7%)

Query  173  YADGVFDLFHVGHMRQLEQAKKAFPDVYLIVGVTGDEETHKRKGLTVLSGRERAESVRHC  232
               G FD  H+GH+R LEQAK+ F D  LIVGV  DE  HK     + S  ER E +   
Sbjct  1    LFGGTFDPIHLGHLRLLEQAKELF-DEDLIVGVPSDEPPHK-LKRPLFSAEERLEMLELA  58

Query  233  KWVDEVIPDCPWIVTPEFIEKHQIDYVAHDDLPYGAA--EGDDIYAPIKAQG-----KFL  285
            KWVDEVI   PW +T E +++   D +            E D+I   +K         F+
Sbjct  59   KWVDEVIVVAPWELTRELLKELNPDVLVIGADSLLDFWYELDEILGNVKLVVVVRPVFFI  118

Query  286  VTQRTEGVSTTGIITR  301
              + T G+S+T I  R
Sbjct  119  PLKPTNGISSTDIRER  134



Lambda      K        H        a         alpha
   0.311    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0832    0.140     1.90     42.6     43.6 

Effective search space used: 599678264


Query= TCONS_00001509

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like....  109     4e-29


>CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like.  This 
family includes: Cholinephosphate cytidylyltransferase; glycerol-3-phosphate 
cytidylyltransferase. It also includes putative 
adenylyltransferases, and FAD synthases.
Length=134

 Score = 109 bits (274),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 50/136 (37%), Positives = 66/136 (49%), Gaps = 9/136 (7%)

Query  173  YADGVFDLFHVGHMRQLEQAKKAFPDVYLIVGVTGDEETHKRKGLTVLSGRERAESVRHC  232
               G FD  H+GH+R LEQAK+ F D  LIVGV  DE  HK     + S  ER E +   
Sbjct  1    LFGGTFDPIHLGHLRLLEQAKELF-DEDLIVGVPSDEPPHK-LKRPLFSAEERLEMLELA  58

Query  233  KWVDEVIPDCPWIVTPEFIEKHQIDYVAHDDLPYGAA--EGDDIYAPIKAQG-----KFL  285
            KWVDEVI   PW +T E +++   D +            E D+I   +K         F+
Sbjct  59   KWVDEVIVVAPWELTRELLKELNPDVLVIGADSLLDFWYELDEILGNVKLVVVVRPVFFI  118

Query  286  VTQRTEGVSTTGIITR  301
              + T G+S+T I  R
Sbjct  119  PLKPTNGISSTDIRER  134



Lambda      K        H        a         alpha
   0.311    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598144560


Query= TCONS_00007201

Length=248
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like....  85.4    1e-21


>CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like.  This 
family includes: Cholinephosphate cytidylyltransferase; glycerol-3-phosphate 
cytidylyltransferase. It also includes putative 
adenylyltransferases, and FAD synthases.
Length=134

 Score = 85.4 bits (212),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 45/124 (36%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query  45   HMRQLEQAKKAFPDVYLIVGVTGDEETHKRKGLTVLSGRERAESVRHCKWVDEVIPDCPW  104
            H+R LEQAK+ F D  LIVGV  DE  HK     + S  ER E +   KWVDEVI   PW
Sbjct  13   HLRLLEQAKELF-DEDLIVGVPSDEPPHK-LKRPLFSAEERLEMLELAKWVDEVIVVAPW  70

Query  105  IVTPEFIEKHQIDYVAHDDLPYGAA--EGDDIYAPIKAQG-----KFLVTQRTEGVSTTG  157
             +T E +++   D +            E D+I   +K         F+  + T G+S+T 
Sbjct  71   ELTRELLKELNPDVLVIGADSLLDFWYELDEILGNVKLVVVVRPVFFIPLKPTNGISSTD  130

Query  158  IITR  161
            I  R
Sbjct  131  IRER  134



Lambda      K        H        a         alpha
   0.323    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00001510

Length=315


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00001511

Length=315


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00001512

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00007202

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00007203

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00007204

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369113 pfam06862, UTP25, Utp25, U3 small nucleolar RNA-associ...  415     1e-145


>CDD:369113 pfam06862, UTP25, Utp25, U3 small nucleolar RNA-associated SSU 
processome protein 25.  UTP25 is a family of eukaryotic proteins. 
The family displays limited sequence similarity to DEAD-box 
RNA helicases, having alternative residues at the Walker 
A and DEAD-box sites, but conservation of structural and 
other key residues. The domain is required and sufficient 
for the interaction of Utp25 with Utp3. UTP25 interacts with 
nucleolar protein Nop19 in S. cerevisiae, and Nop19p is essential 
for the incorporation of Utp25p into pre-ribosomes.
Length=471

 Score = 415 bits (1069),  Expect = 1e-145, Method: Composition-based stats.
 Identities = 154/282 (55%), Positives = 199/282 (71%), Gaps = 15/282 (5%)

Query  1    MQNWDHVGYILDRLNLQPKEAHGCDFSRVRTWYLDNHARFVRQMIVSASFITPEINSLFS  60
            MQNW+HV  +   LNL PKE+HGCDFSRVR WYLD  A++ RQ IV +S+ITPEINSLF+
Sbjct  203  MQNWEHVLTVFKHLNLIPKESHGCDFSRVRMWYLDGQAKYYRQTIVFSSYITPEINSLFN  262

Query  61   THMQNFAGKVKVTPVYVG-AISEVPLPVSVKQTFSRFDSLTPTKDPDARFKHFTTTVLSS  119
            +   N AGKV+V P+Y G +I +V L   V+Q F RFD+ +   +PDARFK FT  +L  
Sbjct  263  SKCHNIAGKVRVKPIYKGGSIGQVGLK--VRQVFQRFDADSIVDEPDARFKFFTNNILPQ  320

Query  120  LVRNITSSRDKSSAGGTLIFIPSYLDFVRVRNYFATSSQTTNVSFGAISEYSEVREMTRA  179
            LV++         + GTLI+IPSY DFVR+RNY        NVSFGAISEYS  +E++RA
Sbjct  321  LVKS------SGYSSGTLIYIPSYFDFVRLRNYLK----EENVSFGAISEYSSQKEVSRA  370

Query  180  RTHFMNGRHAVLLYTERLHHFRRYQLRGVKRIVMYGVPENPLFWGEIVGFLGLDP-AGVV  238
            RT F +GR  VLLYTERLH FRRY+++GVK ++ YG+PENP F+ E+V FLG     G  
Sbjct  371  RTQFFSGRKKVLLYTERLHFFRRYEIKGVKNVIFYGLPENPQFYSELVRFLGKSVFEGDA  430

Query  239  DAAEGGVRALFSKWDALKLERIVGTKRVGNMLREKGGDTFTF  280
            D+ +G VRAL+SK+DAL LERIVGT+R   +L+ +  +T+ F
Sbjct  431  DSNDGTVRALYSKYDALALERIVGTERAAKLLKSQ-KETYEF  471



Lambda      K        H        a         alpha
   0.324    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00001515

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin proteas...  101     5e-27
CDD:463772 pfam13012, MitMem_reg, Maintenance of mitochondrial st...  57.5    1e-11


>CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease.  Members 
of this family are found in proteasome regulatory subunits, 
eukaryotic initiation factor 3 (eIF3) subunits and regulators 
of transcription factors. This family is also known as 
the MPN domain and PAD-1-like domain, JABP1 domain or JAMM 
domain. These are metalloenzymes that function as the ubiquitin 
isopeptidase/ deubiquitinase in the ubiquitin-based signalling 
and protein turnover pathways in eukaryotes. Versions 
of the domain in prokaryotic cognates of the ubiquitin-modification 
pathway are shown to have a similar role, and the 
archael protein from Haloferax volcanii is found to cleave ubiquitin-like 
small archaeal modifier proteins (SAMP1/2) from 
protein conjugates.
Length=117

 Score = 101 bits (253),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 41/112 (37%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query  25   TAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTD  84
            ++   V+I P  +  ILDH+ R     E V+G LLG    DGT +EI ++FA+   ET D
Sbjct  1    SSVRTVIIHPLVLLKILDHANRGGKIGEEVMGVLLGKLEGDGT-IEITNSFALPQEETED  59

Query  85   QVEV---DMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSA---LIQNFY  130
             V     D EY + M  +  K N KE +VGWY T   L   S+        Y
Sbjct  60   DVNAVALDQEYMENMHEMLKKVNRKEEVVGWYHTHPGLCWLSSVDVHTHALY  111


>CDD:463772 pfam13012, MitMem_reg, Maintenance of mitochondrial structure 
and function.  This is C-terminal to the Mov24 region of the 
yeast proteasomal subunit Rpn11 and seems likely to regulate 
the mitochondrial fission and tubulation processes, ie the 
outer mitochondrial membrane proteins. This function appears 
to be unrelated to the proteasome activity of the N-terminal 
region.
Length=72

 Score = 57.5 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 42/77 (55%), Gaps = 5/77 (6%)

Query  189  EAEKSGLEAIASAKDAESRATNIFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPAST  248
            EAE+ G++ +A          ++ +D+E    +++ +   +D + +YVE V+D E P   
Sbjct  1    EAERIGVDHLA-----RPDIKSLSSDLERQYYSLKMLQDRLDLILKYVEDVLDGELPPDH  55

Query  249  ALGQFLLNALALAPKVE  265
            A+G++L + LAL   + 
Sbjct  56   AIGRYLQDLLALNELLN  72



Lambda      K        H        a         alpha
   0.315    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00001513

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463772 pfam13012, MitMem_reg, Maintenance of mitochondrial st...  57.5    1e-11


>CDD:463772 pfam13012, MitMem_reg, Maintenance of mitochondrial structure 
and function.  This is C-terminal to the Mov24 region of the 
yeast proteasomal subunit Rpn11 and seems likely to regulate 
the mitochondrial fission and tubulation processes, ie the 
outer mitochondrial membrane proteins. This function appears 
to be unrelated to the proteasome activity of the N-terminal 
region.
Length=72

 Score = 57.5 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 42/77 (55%), Gaps = 5/77 (6%)

Query  100  EAEKSGLEAIASAKDAESRATNIFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPAST  159
            EAE+ G++ +A          ++ +D+E    +++ +   +D + +YVE V+D E P   
Sbjct  1    EAERIGVDHLA-----RPDIKSLSSDLERQYYSLKMLQDRLDLILKYVEDVLDGELPPDH  55

Query  160  ALGQFLLNALALAPKVE  176
            A+G++L + LAL   + 
Sbjct  56   AIGRYLQDLLALNELLN  72



Lambda      K        H        a         alpha
   0.314    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00001514

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin proteas...  101     5e-27
CDD:463772 pfam13012, MitMem_reg, Maintenance of mitochondrial st...  56.0    5e-11


>CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease.  Members 
of this family are found in proteasome regulatory subunits, 
eukaryotic initiation factor 3 (eIF3) subunits and regulators 
of transcription factors. This family is also known as 
the MPN domain and PAD-1-like domain, JABP1 domain or JAMM 
domain. These are metalloenzymes that function as the ubiquitin 
isopeptidase/ deubiquitinase in the ubiquitin-based signalling 
and protein turnover pathways in eukaryotes. Versions 
of the domain in prokaryotic cognates of the ubiquitin-modification 
pathway are shown to have a similar role, and the 
archael protein from Haloferax volcanii is found to cleave ubiquitin-like 
small archaeal modifier proteins (SAMP1/2) from 
protein conjugates.
Length=117

 Score = 101 bits (253),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 41/112 (37%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query  25   TAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTD  84
            ++   V+I P  +  ILDH+ R     E V+G LLG    DGT +EI ++FA+   ET D
Sbjct  1    SSVRTVIIHPLVLLKILDHANRGGKIGEEVMGVLLGKLEGDGT-IEITNSFALPQEETED  59

Query  85   QVEV---DMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSA---LIQNFY  130
             V     D EY + M  +  K N KE +VGWY T   L   S+        Y
Sbjct  60   DVNAVALDQEYMENMHEMLKKVNRKEEVVGWYHTHPGLCWLSSVDVHTHALY  111


>CDD:463772 pfam13012, MitMem_reg, Maintenance of mitochondrial structure 
and function.  This is C-terminal to the Mov24 region of the 
yeast proteasomal subunit Rpn11 and seems likely to regulate 
the mitochondrial fission and tubulation processes, ie the 
outer mitochondrial membrane proteins. This function appears 
to be unrelated to the proteasome activity of the N-terminal 
region.
Length=72

 Score = 56.0 bits (136),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 42/77 (55%), Gaps = 5/77 (6%)

Query  189  EAEKSGLEAIASAKDAESRATNIFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPAST  248
            EAE+ G++ +A          ++ +D+E    +++ +   +D + +YVE V+D E P   
Sbjct  1    EAERIGVDHLA-----RPDIKSLSSDLERQYYSLKMLQDRLDLILKYVEDVLDGELPPDH  55

Query  249  ALGQFLLNALALAPKVE  265
            A+G++L + LAL   + 
Sbjct  56   AIGRYLQDLLALNELLN  72



Lambda      K        H        a         alpha
   0.313    0.129    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00001516

Length=256
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463772 pfam13012, MitMem_reg, Maintenance of mitochondrial st...  56.0    3e-11


>CDD:463772 pfam13012, MitMem_reg, Maintenance of mitochondrial structure 
and function.  This is C-terminal to the Mov24 region of the 
yeast proteasomal subunit Rpn11 and seems likely to regulate 
the mitochondrial fission and tubulation processes, ie the 
outer mitochondrial membrane proteins. This function appears 
to be unrelated to the proteasome activity of the N-terminal 
region.
Length=72

 Score = 56.0 bits (136),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 42/77 (55%), Gaps = 5/77 (6%)

Query  100  EAEKSGLEAIASAKDAESRATNIFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPAST  159
            EAE+ G++ +A          ++ +D+E    +++ +   +D + +YVE V+D E P   
Sbjct  1    EAERIGVDHLA-----RPDIKSLSSDLERQYYSLKMLQDRLDLILKYVEDVLDGELPPDH  55

Query  160  ALGQFLLNALALAPKVE  176
            A+G++L + LAL   + 
Sbjct  56   AIGRYLQDLLALNELLN  72



Lambda      K        H        a         alpha
   0.312    0.128    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00007205

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin proteas...  101     5e-27
CDD:463772 pfam13012, MitMem_reg, Maintenance of mitochondrial st...  56.0    6e-11


>CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease.  Members 
of this family are found in proteasome regulatory subunits, 
eukaryotic initiation factor 3 (eIF3) subunits and regulators 
of transcription factors. This family is also known as 
the MPN domain and PAD-1-like domain, JABP1 domain or JAMM 
domain. These are metalloenzymes that function as the ubiquitin 
isopeptidase/ deubiquitinase in the ubiquitin-based signalling 
and protein turnover pathways in eukaryotes. Versions 
of the domain in prokaryotic cognates of the ubiquitin-modification 
pathway are shown to have a similar role, and the 
archael protein from Haloferax volcanii is found to cleave ubiquitin-like 
small archaeal modifier proteins (SAMP1/2) from 
protein conjugates.
Length=117

 Score = 101 bits (253),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 41/112 (37%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query  25   TAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTD  84
            ++   V+I P  +  ILDH+ R     E V+G LLG    DGT +EI ++FA+   ET D
Sbjct  1    SSVRTVIIHPLVLLKILDHANRGGKIGEEVMGVLLGKLEGDGT-IEITNSFALPQEETED  59

Query  85   QVEV---DMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSA---LIQNFY  130
             V     D EY + M  +  K N KE +VGWY T   L   S+        Y
Sbjct  60   DVNAVALDQEYMENMHEMLKKVNRKEEVVGWYHTHPGLCWLSSVDVHTHALY  111


>CDD:463772 pfam13012, MitMem_reg, Maintenance of mitochondrial structure 
and function.  This is C-terminal to the Mov24 region of the 
yeast proteasomal subunit Rpn11 and seems likely to regulate 
the mitochondrial fission and tubulation processes, ie the 
outer mitochondrial membrane proteins. This function appears 
to be unrelated to the proteasome activity of the N-terminal 
region.
Length=72

 Score = 56.0 bits (136),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 42/77 (55%), Gaps = 5/77 (6%)

Query  189  EAEKSGLEAIASAKDAESRATNIFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPAST  248
            EAE+ G++ +A          ++ +D+E    +++ +   +D + +YVE V+D E P   
Sbjct  1    EAERIGVDHLA-----RPDIKSLSSDLERQYYSLKMLQDRLDLILKYVEDVLDGELPPDH  55

Query  249  ALGQFLLNALALAPKVE  265
            A+G++L + LAL   + 
Sbjct  56   AIGRYLQDLLALNELLN  72



Lambda      K        H        a         alpha
   0.313    0.129    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00007206

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00007207

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00001520

Length=111
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:190265 pfam02269, TFIID-18kDa, Transcription initiation facto...  56.3    2e-12


>CDD:190265 pfam02269, TFIID-18kDa, Transcription initiation factor IID, 
18kD subunit.  This family includes the Spt3 yeast transcription 
factors and the 18kD subunit from human transcription initiation 
factor IID (TFIID-18). Determination of the crystal 
structure reveals an atypical histone fold.
Length=93

 Score = 56.3 bits (136),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 35/55 (64%), Gaps = 0/55 (0%)

Query  1   MCHNAAQYASYSRRQKIKVDDFRFALRRDPNKLGRVQELLRMERELKEARKAFDQ  55
           +   A + A     +KI ++D +F +R+DP KL R+++LL M   LK+ARK FD+
Sbjct  39  LLQQAMKTAQLRGSRKITLEDIKFLIRKDPKKLNRLKDLLSMNELLKKARKQFDE  93



Lambda      K        H        a         alpha
   0.312    0.132    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00001521

Length=72
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462019 pfam06842, DUF1242, Protein of unknown function (DUF12...  56.4    1e-13


>CDD:462019 pfam06842, DUF1242, Protein of unknown function (DUF1242).  This 
family consists of a number of eukaryotic proteins of around 
72 residues in length. The function of this family is unknown.
Length=35

 Score = 56.4 bits (137),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 0/35 (0%)

Query  10  LLLVFLLIICTSTYAHSIMPGIMDRNQRGFFGIFW  44
           LL+V LL+ICT TY   + P ++DRN+ GF GIFW
Sbjct  1   LLVVILLLICTCTYVRQLFPSLLDRNKTGFLGIFW  35



Lambda      K        H        a         alpha
   0.338    0.148    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00001522

Length=81
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462019 pfam06842, DUF1242, Protein of unknown function (DUF12...  57.9    5e-14


>CDD:462019 pfam06842, DUF1242, Protein of unknown function (DUF1242).  This 
family consists of a number of eukaryotic proteins of around 
72 residues in length. The function of this family is unknown.
Length=35

 Score = 57.9 bits (141),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 0/35 (0%)

Query  12  LLLVFLLIICTSTYAHSIMPGIMDRNQRGFFGIFW  46
           LL+V LL+ICT TY   + P ++DRN+ GF GIFW
Sbjct  1   LLVVILLLICTCTYVRQLFPSLLDRNKTGFLGIFW  35



Lambda      K        H        a         alpha
   0.335    0.143    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00001523

Length=100
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460106 pfam01196, Ribosomal_L17, Ribosomal protein L17            97.0    2e-28


>CDD:460106 pfam01196, Ribosomal_L17, Ribosomal protein L17.  
Length=97

 Score = 97.0 bits (243),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 0/52 (0%)

Query  21  LLRNLVTSLFKHESITTTWAKAKEAQRLAEKLITLGKKNTEASRRRALSVFY  72
           LLRNLVTSL +HE I TT AKAKE +R AEKLITL KK    +RR+AL+   
Sbjct  1   LLRNLVTSLIEHERIETTLAKAKELRRYAEKLITLAKKGDLHARRQALAYLR  52



Lambda      K        H        a         alpha
   0.319    0.127    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00001524

Length=100
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460106 pfam01196, Ribosomal_L17, Ribosomal protein L17            97.0    2e-28


>CDD:460106 pfam01196, Ribosomal_L17, Ribosomal protein L17.  
Length=97

 Score = 97.0 bits (243),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 0/52 (0%)

Query  21  LLRNLVTSLFKHESITTTWAKAKEAQRLAEKLITLGKKNTEASRRRALSVFY  72
           LLRNLVTSL +HE I TT AKAKE +R AEKLITL KK    +RR+AL+   
Sbjct  1   LLRNLVTSLIEHERIETTLAKAKELRRYAEKLITLAKKGDLHARRQALAYLR  52



Lambda      K        H        a         alpha
   0.319    0.127    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00007209

Length=100
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460106 pfam01196, Ribosomal_L17, Ribosomal protein L17            97.0    2e-28


>CDD:460106 pfam01196, Ribosomal_L17, Ribosomal protein L17.  
Length=97

 Score = 97.0 bits (243),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 0/52 (0%)

Query  21  LLRNLVTSLFKHESITTTWAKAKEAQRLAEKLITLGKKNTEASRRRALSVFY  72
           LLRNLVTSL +HE I TT AKAKE +R AEKLITL KK    +RR+AL+   
Sbjct  1   LLRNLVTSLIEHERIETTLAKAKELRRYAEKLITLAKKGDLHARRQALAYLR  52



Lambda      K        H        a         alpha
   0.319    0.127    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00001525

Length=100
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460106 pfam01196, Ribosomal_L17, Ribosomal protein L17            97.0    2e-28


>CDD:460106 pfam01196, Ribosomal_L17, Ribosomal protein L17.  
Length=97

 Score = 97.0 bits (243),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 0/52 (0%)

Query  21  LLRNLVTSLFKHESITTTWAKAKEAQRLAEKLITLGKKNTEASRRRALSVFY  72
           LLRNLVTSL +HE I TT AKAKE +R AEKLITL KK    +RR+AL+   
Sbjct  1   LLRNLVTSLIEHERIETTLAKAKELRRYAEKLITLAKKGDLHARRQALAYLR  52



Lambda      K        H        a         alpha
   0.319    0.127    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00007210

Length=100
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460106 pfam01196, Ribosomal_L17, Ribosomal protein L17            97.0    2e-28


>CDD:460106 pfam01196, Ribosomal_L17, Ribosomal protein L17.  
Length=97

 Score = 97.0 bits (243),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 0/52 (0%)

Query  21  LLRNLVTSLFKHESITTTWAKAKEAQRLAEKLITLGKKNTEASRRRALSVFY  72
           LLRNLVTSL +HE I TT AKAKE +R AEKLITL KK    +RR+AL+   
Sbjct  1   LLRNLVTSLIEHERIETTLAKAKELRRYAEKLITLAKKGDLHARRQALAYLR  52



Lambda      K        H        a         alpha
   0.319    0.127    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00007211

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  219     7e-70


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 219 bits (559),  Expect = 7e-70, Method: Composition-based stats.
 Identities = 82/181 (45%), Positives = 105/181 (58%), Gaps = 21/181 (12%)

Query  326  KTLVLDLDETLIHSLAKGGRMSSGHMVEVKLATPMTTALTPGGSPTTLGPQHPILYYVHK  385
            KTLVLDLDETL+HS              + +                  P      YV K
Sbjct  1    KTLVLDLDETLVHS---SFEPPLKSDFILPV------------------PGETHGGYVKK  39

Query  386  RPNCDDFLRKVCKWYKLVIFTASVQEYADPVIDWLEQERKYFHARYYRQHCTFRNGAYIK  445
            RP  D+FL+++ K+Y++VIFTAS +EYADPV+D L+   K F  R YR+ C F +G Y+K
Sbjct  40   RPGLDEFLKELSKYYEIVIFTASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVK  99

Query  446  DLSSVEPDLSKVMILDNSPMSYLFHEDNAIPIEGWINDPTDNGLLNLIPMLEALQYVTDV  505
            DLS +  DLS+V+I+DNSP S+L   DN IPI  +  DP DN LL L+P LE L  V DV
Sbjct  100  DLSLLGRDLSRVVIVDNSPDSFLLQPDNGIPIPPFFGDPDDNELLKLLPFLEGLAGVDDV  159

Query  506  R  506
            R
Sbjct  160  R  160



Lambda      K        H        a         alpha
   0.315    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00001526

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395112 pfam00164, Ribosom_S12_S23, Ribosomal protein S12/S23....  177     4e-59


>CDD:395112 pfam00164, Ribosom_S12_S23, Ribosomal protein S12/S23.  This 
protein is known as S12 in bacteria and archaea and S23 in eukaryotes.
Length=114

 Score = 177 bits (450),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 70/114 (61%), Positives = 89/114 (78%), Gaps = 0/114 (0%)

Query  31   KRLLGTAFKSSPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVKVQLIKNGKKVTAFVPND  90
            +RLLG   KS P  GA  A+G+VLEKV VE KQPNSA+RKCV+V+LIKNGK+VTAF+P +
Sbjct  1    RRLLGLKTKSPPLEGAPQARGVVLEKVTVEPKQPNSALRKCVRVRLIKNGKEVTAFIPGE  60

Query  91   GCLNFIDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPR  144
            G ++F+ E+DEVL+ G G  G A GD+PGVR+KVV+V+GV L AL K   EKP+
Sbjct  61   GAIHFLQEHDEVLIRGGGGPGHAVGDLPGVRYKVVRVAGVSLQALSKYGAEKPK  114



Lambda      K        H        a         alpha
   0.317    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00001527

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395112 pfam00164, Ribosom_S12_S23, Ribosomal protein S12/S23....  177     4e-59


>CDD:395112 pfam00164, Ribosom_S12_S23, Ribosomal protein S12/S23.  This 
protein is known as S12 in bacteria and archaea and S23 in eukaryotes.
Length=114

 Score = 177 bits (450),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 70/114 (61%), Positives = 89/114 (78%), Gaps = 0/114 (0%)

Query  31   KRLLGTAFKSSPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVKVQLIKNGKKVTAFVPND  90
            +RLLG   KS P  GA  A+G+VLEKV VE KQPNSA+RKCV+V+LIKNGK+VTAF+P +
Sbjct  1    RRLLGLKTKSPPLEGAPQARGVVLEKVTVEPKQPNSALRKCVRVRLIKNGKEVTAFIPGE  60

Query  91   GCLNFIDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPR  144
            G ++F+ E+DEVL+ G G  G A GD+PGVR+KVV+V+GV L AL K   EKP+
Sbjct  61   GAIHFLQEHDEVLIRGGGGPGHAVGDLPGVRYKVVRVAGVSLQALSKYGAEKPK  114



Lambda      K        H        a         alpha
   0.317    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00001528

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395112 pfam00164, Ribosom_S12_S23, Ribosomal protein S12/S23....  177     4e-59


>CDD:395112 pfam00164, Ribosom_S12_S23, Ribosomal protein S12/S23.  This 
protein is known as S12 in bacteria and archaea and S23 in eukaryotes.
Length=114

 Score = 177 bits (450),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 70/114 (61%), Positives = 89/114 (78%), Gaps = 0/114 (0%)

Query  31   KRLLGTAFKSSPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVKVQLIKNGKKVTAFVPND  90
            +RLLG   KS P  GA  A+G+VLEKV VE KQPNSA+RKCV+V+LIKNGK+VTAF+P +
Sbjct  1    RRLLGLKTKSPPLEGAPQARGVVLEKVTVEPKQPNSALRKCVRVRLIKNGKEVTAFIPGE  60

Query  91   GCLNFIDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPR  144
            G ++F+ E+DEVL+ G G  G A GD+PGVR+KVV+V+GV L AL K   EKP+
Sbjct  61   GAIHFLQEHDEVLIRGGGGPGHAVGDLPGVRYKVVRVAGVSLQALSKYGAEKPK  114



Lambda      K        H        a         alpha
   0.317    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00001529

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  219     7e-70


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 219 bits (559),  Expect = 7e-70, Method: Composition-based stats.
 Identities = 82/181 (45%), Positives = 105/181 (58%), Gaps = 21/181 (12%)

Query  326  KTLVLDLDETLIHSLAKGGRMSSGHMVEVKLATPMTTALTPGGSPTTLGPQHPILYYVHK  385
            KTLVLDLDETL+HS              + +                  P      YV K
Sbjct  1    KTLVLDLDETLVHS---SFEPPLKSDFILPV------------------PGETHGGYVKK  39

Query  386  RPNCDDFLRKVCKWYKLVIFTASVQEYADPVIDWLEQERKYFHARYYRQHCTFRNGAYIK  445
            RP  D+FL+++ K+Y++VIFTAS +EYADPV+D L+   K F  R YR+ C F +G Y+K
Sbjct  40   RPGLDEFLKELSKYYEIVIFTASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVK  99

Query  446  DLSSVEPDLSKVMILDNSPMSYLFHEDNAIPIEGWINDPTDNGLLNLIPMLEALQYVTDV  505
            DLS +  DLS+V+I+DNSP S+L   DN IPI  +  DP DN LL L+P LE L  V DV
Sbjct  100  DLSLLGRDLSRVVIVDNSPDSFLLQPDNGIPIPPFFGDPDDNELLKLLPFLEGLAGVDDV  159

Query  506  R  506
            R
Sbjct  160  R  160



Lambda      K        H        a         alpha
   0.315    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00007212

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  168     6e-51


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 168 bits (429),  Expect = 6e-51, Method: Composition-based stats.
 Identities = 62/145 (43%), Positives = 83/145 (57%), Gaps = 21/145 (14%)

Query  326  KTLVLDLDETLIHSLAKGGRMSSGHMVEVKLATPMTTALTPGGSPTTLGPQHPILYYVHK  385
            KTLVLDLDETL+HS              + +                  P      YV K
Sbjct  1    KTLVLDLDETLVHS---SFEPPLKSDFILPV------------------PGETHGGYVKK  39

Query  386  RPNCDDFLRKVCKWYKLVIFTASVQEYADPVIDWLEQERKYFHARYYRQHCTFRNGAYIK  445
            RP  D+FL+++ K+Y++VIFTAS +EYADPV+D L+   K F  R YR+ C F +G Y+K
Sbjct  40   RPGLDEFLKELSKYYEIVIFTASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVK  99

Query  446  DLSSVEPDLSKVMILDNSPMSYLFH  470
            DLS +  DLS+V+I+DNSP S+L  
Sbjct  100  DLSLLGRDLSRVVIVDNSPDSFLLQ  124



Lambda      K        H        a         alpha
   0.315    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00007214

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  168     6e-51


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 168 bits (429),  Expect = 6e-51, Method: Composition-based stats.
 Identities = 62/145 (43%), Positives = 83/145 (57%), Gaps = 21/145 (14%)

Query  326  KTLVLDLDETLIHSLAKGGRMSSGHMVEVKLATPMTTALTPGGSPTTLGPQHPILYYVHK  385
            KTLVLDLDETL+HS              + +                  P      YV K
Sbjct  1    KTLVLDLDETLVHS---SFEPPLKSDFILPV------------------PGETHGGYVKK  39

Query  386  RPNCDDFLRKVCKWYKLVIFTASVQEYADPVIDWLEQERKYFHARYYRQHCTFRNGAYIK  445
            RP  D+FL+++ K+Y++VIFTAS +EYADPV+D L+   K F  R YR+ C F +G Y+K
Sbjct  40   RPGLDEFLKELSKYYEIVIFTASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVK  99

Query  446  DLSSVEPDLSKVMILDNSPMSYLFH  470
            DLS +  DLS+V+I+DNSP S+L  
Sbjct  100  DLSLLGRDLSRVVIVDNSPDSFLLQ  124



Lambda      K        H        a         alpha
   0.315    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00007213

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  168     6e-51


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 168 bits (429),  Expect = 6e-51, Method: Composition-based stats.
 Identities = 62/145 (43%), Positives = 83/145 (57%), Gaps = 21/145 (14%)

Query  326  KTLVLDLDETLIHSLAKGGRMSSGHMVEVKLATPMTTALTPGGSPTTLGPQHPILYYVHK  385
            KTLVLDLDETL+HS              + +                  P      YV K
Sbjct  1    KTLVLDLDETLVHS---SFEPPLKSDFILPV------------------PGETHGGYVKK  39

Query  386  RPNCDDFLRKVCKWYKLVIFTASVQEYADPVIDWLEQERKYFHARYYRQHCTFRNGAYIK  445
            RP  D+FL+++ K+Y++VIFTAS +EYADPV+D L+   K F  R YR+ C F +G Y+K
Sbjct  40   RPGLDEFLKELSKYYEIVIFTASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVK  99

Query  446  DLSSVEPDLSKVMILDNSPMSYLFH  470
            DLS +  DLS+V+I+DNSP S+L  
Sbjct  100  DLSLLGRDLSRVVIVDNSPDSFLLQ  124



Lambda      K        H        a         alpha
   0.315    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00007215

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00007216

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00007217

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00001530

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432832 pfam12850, Metallophos_2, Calcineurin-like phosphoeste...  69.6    7e-16


>CDD:432832 pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily 
domain.  Members of this family are part of the Calcineurin-like 
phosphoesterase superfamily.
Length=150

 Score = 69.6 bits (171),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 48/167 (29%), Positives = 73/167 (44%), Gaps = 23/167 (14%)

Query  5    LVLVIGDLFIPDRAPDLPAKFRKLLTPGKIGQILCLGNLTDRETFEFLRQVAPDLQLVKG  64
             + +I D         LP    + L  G +  I+  G++   E  E L ++AP L  V+G
Sbjct  2    RIGIISDT---HDNLALPEAALERLK-GVVDLIIHAGDIVAPEVLEELLELAPVL-AVRG  56

Query  65   DFDVDSPN---LPLSKVVTHGSLRIGFTHGHTIIPPGDADAL--LIAARQMDVDILLWGG  119
            + D  +     LP   V+  G ++I  THGH     G  DAL  L+   +  V ++++G 
Sbjct  57   NNDAAAEFATDLPEEAVLELGGVKILLTHGH-----GVKDALARLLRRAEEGVAVVVYGH  111

Query  120  THRFEAFEMEGRFFVNPGSATGAMSTGYWPEGEEPVPSFCLMDIQGD  166
            TH      + G  FVNPGS  G    G         P++ L+DI   
Sbjct  112  THVPGVERIGGVLFVNPGSVGGP-RFG-------DPPTYALLDIDDG  150



Lambda      K        H        a         alpha
   0.322    0.141    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00007218

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  64.2    1e-14


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 64.2 bits (157),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 24/71 (34%), Positives = 39/71 (55%), Gaps = 2/71 (3%)

Query  69   IFVGNVDYGASPEEIQAHFQSCGSINRVTILLDKFTGQPKGYAYVEFAEPSLVAQALV-L  127
            +FVGN+    + E+++  F   G I  + ++ D  TG+ KG+A+VEF +     +A+  L
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  128  NESVFRGRNLK  138
            N     GR LK
Sbjct  60   NGKELGGRELK  70



Lambda      K        H        a         alpha
   0.314    0.136    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00001532

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432832 pfam12850, Metallophos_2, Calcineurin-like phosphoeste...  69.6    6e-16


>CDD:432832 pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily 
domain.  Members of this family are part of the Calcineurin-like 
phosphoesterase superfamily.
Length=150

 Score = 69.6 bits (171),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 49/166 (30%), Positives = 76/166 (46%), Gaps = 26/166 (16%)

Query  5    LVLVIGD----LFIPDRAPFRKLLTPGKIGQILCLGNLTDRETFEFLRQVAPDLQLVKGD  60
             + +I D    L +P+ A   +L   G +  I+  G++   E  E L ++AP L  V+G+
Sbjct  2    RIGIISDTHDNLALPEAA-LERLK--GVVDLIIHAGDIVAPEVLEELLELAPVL-AVRGN  57

Query  61   FDVDSPN---LPLSKVVTHGSLRIGFTHGHTIIPPGDADAL--LIAARQMDVDILLWGGT  115
             D  +     LP   V+  G ++I  THGH     G  DAL  L+   +  V ++++G T
Sbjct  58   NDAAAEFATDLPEEAVLELGGVKILLTHGH-----GVKDALARLLRRAEEGVAVVVYGHT  112

Query  116  HRFEAFEMEGRFFVNPGSATGAMSTGYWPEGEEPVPSFCLMDIQGD  161
            H      + G  FVNPGS  G    G         P++ L+DI   
Sbjct  113  HVPGVERIGGVLFVNPGSVGGP-RFG-------DPPTYALLDIDDG  150



Lambda      K        H        a         alpha
   0.322    0.142    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00001534

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  63.0    1e-14


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 63.0 bits (154),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 24/71 (34%), Positives = 39/71 (55%), Gaps = 2/71 (3%)

Query  69   IFVGNVDYGASPEEIQAHFQSCGSINRVTILLDKFTGQPKGYAYVEFAEPSLVAQALV-L  127
            +FVGN+    + E+++  F   G I  + ++ D  TG+ KG+A+VEF +     +A+  L
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  128  NESVFRGRNLK  138
            N     GR LK
Sbjct  60   NGKELGGRELK  70



Lambda      K        H        a         alpha
   0.314    0.130    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00001535

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00001536

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  64.6    1e-14


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 64.6 bits (158),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 24/71 (34%), Positives = 39/71 (55%), Gaps = 2/71 (3%)

Query  94   IFVGNVDYGASPEEIQAHFQSCGSINRVTILLDKFTGQPKGYAYVEFAEPSLVAQALV-L  152
            +FVGN+    + E+++  F   G I  + ++ D  TG+ KG+A+VEF +     +A+  L
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  153  NESVFRGRNLK  163
            N     GR LK
Sbjct  60   NGKELGGRELK  70



Lambda      K        H        a         alpha
   0.315    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00001537

Length=676
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  168     7e-48
CDD:425499 pfam00168, C2, C2 domain                                   72.7    3e-16
CDD:459800 pfam00397, WW, WW domain. The WW domain is a protein m...  62.9    1e-13


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 168 bits (429),  Expect = 7e-48, Method: Composition-based stats.
 Identities = 66/145 (46%), Positives = 96/145 (66%), Gaps = 6/145 (4%)

Query  536  FLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNP--EHLNYFKFIGRVVGLAIFHRRFL  593
             LLS E+F+P Y LFEY   D+ T   NP S  +P  E L+YFKF+G+++G AI++   L
Sbjct  1    TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  594  DSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLTW--TLDNDIEGVLELTFSVDDEKFGE  651
            D  F   FYK +L + ++L+D+E +D +L+++L     +DND +  L LTF++    FGE
Sbjct  61   DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTIP--VFGE  118

Query  652  RRTIDLKPGGRDIPVTNENKAEYVE  676
             +TI+L P GR+IPVTNENK EY+ 
Sbjct  119  SKTIELIPNGRNIPVTNENKEEYIR  143


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 72.7 bits (179),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (46%), Gaps = 1/92 (1%)

Query  11   LRLTIIAADGLYKRDVFRFPDPFAVATV-GGEQTHTTSVIKKTLNPYWNEMFDLRVNEDS  69
            L +T+I A  L  +D     DP+    +  G+Q   T V+K TLNP WNE F   V +  
Sbjct  3    LTVTVIEAKNLPPKDGNGTSDPYVKVYLLDGKQKKKTKVVKNTLNPVWNETFTFSVPDPE  62

Query  70   ILAIQIFDQKKFKKKDQGFLGVINVRIGDVID  101
               ++I      +     F+G + + + ++  
Sbjct  63   NAVLEIEVYDYDRFGRDDFIGEVRIPLSELDS  94


>CDD:459800 pfam00397, WW, WW domain.  The WW domain is a protein module 
with two highly conserved tryptophans that binds proline-rich 
peptide motifs in vitro.
Length=30

 Score = 62.9 bits (154),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (67%), Gaps = 0/30 (0%)

Query  360  LPPGWEQRTTPEGRPYFVDHNTRTTTWVDP  389
            LPPGWE+R  P+GR Y+ +H T  T W  P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 58.3 bits (142),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 0/30 (0%)

Query  256  LPAGWERREDNLGRTYYVDHNTRTTTWTRP  285
            LP GWE R D  GR YY +H T  T W +P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 56.0 bits (136),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 14/30 (47%), Positives = 17/30 (57%), Gaps = 0/30 (0%)

Query  420  LPSGWEMRLTNTARVYFVDHNTKTTTWDDP  449
            LP GWE R     RVY+ +H T  T W+ P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 859802570


Query= TCONS_00007220

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425499 pfam00168, C2, C2 domain                                   72.7    2e-17


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 72.7 bits (179),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (46%), Gaps = 1/92 (1%)

Query  11   LRLTIIAADGLYKRDVFRFPDPFAVATV-GGEQTHTTSVIKKTLNPYWNEMFDLRVNEDS  69
            L +T+I A  L  +D     DP+    +  G+Q   T V+K TLNP WNE F   V +  
Sbjct  3    LTVTVIEAKNLPPKDGNGTSDPYVKVYLLDGKQKKKTKVVKNTLNPVWNETFTFSVPDPE  62

Query  70   ILAIQIFDQKKFKKKDQGFLGVINVRIGDVID  101
               ++I      +     F+G + + + ++  
Sbjct  63   NAVLEIEVYDYDRFGRDDFIGEVRIPLSELDS  94



Lambda      K        H        a         alpha
   0.312    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0832    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00001538

Length=840
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  390     2e-130
CDD:425499 pfam00168, C2, C2 domain                                   72.4    6e-16 
CDD:459800 pfam00397, WW, WW domain. The WW domain is a protein m...  62.9    2e-13 


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 390 bits (1004),  Expect = 2e-130, Method: Composition-based stats.
 Identities = 141/310 (45%), Positives = 200/310 (65%), Gaps = 15/310 (5%)

Query  536  FLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNP--EHLNYFKFIGRVVGLAIFHRRFL  593
             LLS E+F+P Y LFEY   D+ T   NP S  +P  E L+YFKF+G+++G AI++   L
Sbjct  1    TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  594  DSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLTW--TLDNDIEGVLELTFSVDDEKFGE  651
            D  F   FYK +L + ++L+D+E +D +L+++L     +DND +  L LTF++    FGE
Sbjct  61   DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTIP--VFGE  118

Query  652  RRTIDLKPGGRDIPVTNENKAEYVELVTEWKIVKRVEEQFNAFMSGFNELIPADLVNVFD  711
             +TI+L P GR+IPVTNENK EY+ L  ++++ K +E Q  AF  GF  +IP + +++F 
Sbjct  119  SKTIELIPNGRNIPVTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYSVIPKEALSLFT  178

Query  712  ERELELLIGGIADIDVDDWKKHTDYR-GYQESDEVIQNFWKIVRSWDAEQKSRLLQFTTG  770
              ELELLI G  +IDV+D KK+T+Y  GY ++   IQ FW+I+  +  EQ+   L+F TG
Sbjct  179  PEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPEQRRLFLKFVTG  238

Query  771  TSRIPVNGFKDLQGSDGPRRFTIEKSG--DPAALPKSHTCFNRLDLPPYKSYETLEHKMS  828
            +SR+PV GFK L       +FTI + G  D   LP +HTCFNRL LP Y S E L+ K+ 
Sbjct  239  SSRLPVGGFKSLP------KFTIVRKGGDDDDRLPTAHTCFNRLKLPDYSSKEILKEKLL  292

Query  829  IAVEETLGFG  838
            IA+EE  GFG
Sbjct  293  IAIEEGEGFG  302


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 72.4 bits (178),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (46%), Gaps = 1/92 (1%)

Query  11   LRLTIIAADGLYKRDVFRFPDPFAVATV-GGEQTHTTSVIKKTLNPYWNEMFDLRVNEDS  69
            L +T+I A  L  +D     DP+    +  G+Q   T V+K TLNP WNE F   V +  
Sbjct  3    LTVTVIEAKNLPPKDGNGTSDPYVKVYLLDGKQKKKTKVVKNTLNPVWNETFTFSVPDPE  62

Query  70   ILAIQIFDQKKFKKKDQGFLGVINVRIGDVID  101
               ++I      +     F+G + + + ++  
Sbjct  63   NAVLEIEVYDYDRFGRDDFIGEVRIPLSELDS  94


>CDD:459800 pfam00397, WW, WW domain.  The WW domain is a protein module 
with two highly conserved tryptophans that binds proline-rich 
peptide motifs in vitro.
Length=30

 Score = 62.9 bits (154),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (67%), Gaps = 0/30 (0%)

Query  360  LPPGWEQRTTPEGRPYFVDHNTRTTTWVDP  389
            LPPGWE+R  P+GR Y+ +H T  T W  P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 58.3 bits (142),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 0/30 (0%)

Query  256  LPAGWERREDNLGRTYYVDHNTRTTTWTRP  285
            LP GWE R D  GR YY +H T  T W +P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 56.0 bits (136),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 14/30 (47%), Positives = 17/30 (57%), Gaps = 0/30 (0%)

Query  420  LPSGWEMRLTNTARVYFVDHNTKTTTWDDP  449
            LP GWE R     RVY+ +H T  T W+ P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30



Lambda      K        H        a         alpha
   0.317    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1069457930


Query= TCONS_00007221

Length=816
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  390     1e-130
CDD:425499 pfam00168, C2, C2 domain                                   72.4    6e-16 
CDD:459800 pfam00397, WW, WW domain. The WW domain is a protein m...  62.5    2e-13 


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 390 bits (1004),  Expect = 1e-130, Method: Composition-based stats.
 Identities = 141/310 (45%), Positives = 200/310 (65%), Gaps = 15/310 (5%)

Query  512  FLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNP--EHLNYFKFIGRVVGLAIFHRRFL  569
             LLS E+F+P Y LFEY   D+ T   NP S  +P  E L+YFKF+G+++G AI++   L
Sbjct  1    TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  570  DSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLTW--TLDNDIEGVLELTFSVDDEKFGE  627
            D  F   FYK +L + ++L+D+E +D +L+++L     +DND +  L LTF++    FGE
Sbjct  61   DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTIP--VFGE  118

Query  628  RRTIDLKPGGRDIPVTNENKAEYVELVTEWKIVKRVEEQFNAFMSGFNELIPADLVNVFD  687
             +TI+L P GR+IPVTNENK EY+ L  ++++ K +E Q  AF  GF  +IP + +++F 
Sbjct  119  SKTIELIPNGRNIPVTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYSVIPKEALSLFT  178

Query  688  ERELELLIGGIADIDVDDWKKHTDYR-GYQESDEVIQNFWKIVRSWDAEQKSRLLQFTTG  746
              ELELLI G  +IDV+D KK+T+Y  GY ++   IQ FW+I+  +  EQ+   L+F TG
Sbjct  179  PEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPEQRRLFLKFVTG  238

Query  747  TSRIPVNGFKDLQGSDGPRRFTIEKSG--DPAALPKSHTCFNRLDLPPYKSYETLEHKMS  804
            +SR+PV GFK L       +FTI + G  D   LP +HTCFNRL LP Y S E L+ K+ 
Sbjct  239  SSRLPVGGFKSLP------KFTIVRKGGDDDDRLPTAHTCFNRLKLPDYSSKEILKEKLL  292

Query  805  IAVEETLGFG  814
            IA+EE  GFG
Sbjct  293  IAIEEGEGFG  302


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 72.4 bits (178),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (46%), Gaps = 1/92 (1%)

Query  11   LRLTIIAADGLYKRDVFRFPDPFAVATV-GGEQTHTTSVIKKTLNPYWNEMFDLRVNEDS  69
            L +T+I A  L  +D     DP+    +  G+Q   T V+K TLNP WNE F   V +  
Sbjct  3    LTVTVIEAKNLPPKDGNGTSDPYVKVYLLDGKQKKKTKVVKNTLNPVWNETFTFSVPDPE  62

Query  70   ILAIQIFDQKKFKKKDQGFLGVINVRIGDVID  101
               ++I      +     F+G + + + ++  
Sbjct  63   NAVLEIEVYDYDRFGRDDFIGEVRIPLSELDS  94


>CDD:459800 pfam00397, WW, WW domain.  The WW domain is a protein module 
with two highly conserved tryptophans that binds proline-rich 
peptide motifs in vitro.
Length=30

 Score = 62.5 bits (153),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (67%), Gaps = 0/30 (0%)

Query  336  LPPGWEQRTTPEGRPYFVDHNTRTTTWVDP  365
            LPPGWE+R  P+GR Y+ +H T  T W  P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 57.9 bits (141),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 0/30 (0%)

Query  232  LPAGWERREDNLGRTYYVDHNTRTTTWTRP  261
            LP GWE R D  GR YY +H T  T W +P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 56.0 bits (136),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 14/30 (47%), Positives = 17/30 (57%), Gaps = 0/30 (0%)

Query  396  LPSGWEMRLTNTARVYFVDHNTKTTTWDDP  425
            LP GWE R     RVY+ +H T  T W+ P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30



Lambda      K        H        a         alpha
   0.316    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050619744


Query= TCONS_00001539

Length=840
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  390     2e-130
CDD:425499 pfam00168, C2, C2 domain                                   72.4    6e-16 
CDD:459800 pfam00397, WW, WW domain. The WW domain is a protein m...  62.9    2e-13 


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 390 bits (1004),  Expect = 2e-130, Method: Composition-based stats.
 Identities = 141/310 (45%), Positives = 200/310 (65%), Gaps = 15/310 (5%)

Query  536  FLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNP--EHLNYFKFIGRVVGLAIFHRRFL  593
             LLS E+F+P Y LFEY   D+ T   NP S  +P  E L+YFKF+G+++G AI++   L
Sbjct  1    TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  594  DSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLTW--TLDNDIEGVLELTFSVDDEKFGE  651
            D  F   FYK +L + ++L+D+E +D +L+++L     +DND +  L LTF++    FGE
Sbjct  61   DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTIP--VFGE  118

Query  652  RRTIDLKPGGRDIPVTNENKAEYVELVTEWKIVKRVEEQFNAFMSGFNELIPADLVNVFD  711
             +TI+L P GR+IPVTNENK EY+ L  ++++ K +E Q  AF  GF  +IP + +++F 
Sbjct  119  SKTIELIPNGRNIPVTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYSVIPKEALSLFT  178

Query  712  ERELELLIGGIADIDVDDWKKHTDYR-GYQESDEVIQNFWKIVRSWDAEQKSRLLQFTTG  770
              ELELLI G  +IDV+D KK+T+Y  GY ++   IQ FW+I+  +  EQ+   L+F TG
Sbjct  179  PEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPEQRRLFLKFVTG  238

Query  771  TSRIPVNGFKDLQGSDGPRRFTIEKSG--DPAALPKSHTCFNRLDLPPYKSYETLEHKMS  828
            +SR+PV GFK L       +FTI + G  D   LP +HTCFNRL LP Y S E L+ K+ 
Sbjct  239  SSRLPVGGFKSLP------KFTIVRKGGDDDDRLPTAHTCFNRLKLPDYSSKEILKEKLL  292

Query  829  IAVEETLGFG  838
            IA+EE  GFG
Sbjct  293  IAIEEGEGFG  302


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 72.4 bits (178),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (46%), Gaps = 1/92 (1%)

Query  11   LRLTIIAADGLYKRDVFRFPDPFAVATV-GGEQTHTTSVIKKTLNPYWNEMFDLRVNEDS  69
            L +T+I A  L  +D     DP+    +  G+Q   T V+K TLNP WNE F   V +  
Sbjct  3    LTVTVIEAKNLPPKDGNGTSDPYVKVYLLDGKQKKKTKVVKNTLNPVWNETFTFSVPDPE  62

Query  70   ILAIQIFDQKKFKKKDQGFLGVINVRIGDVID  101
               ++I      +     F+G + + + ++  
Sbjct  63   NAVLEIEVYDYDRFGRDDFIGEVRIPLSELDS  94


>CDD:459800 pfam00397, WW, WW domain.  The WW domain is a protein module 
with two highly conserved tryptophans that binds proline-rich 
peptide motifs in vitro.
Length=30

 Score = 62.9 bits (154),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (67%), Gaps = 0/30 (0%)

Query  360  LPPGWEQRTTPEGRPYFVDHNTRTTTWVDP  389
            LPPGWE+R  P+GR Y+ +H T  T W  P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 58.3 bits (142),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 0/30 (0%)

Query  256  LPAGWERREDNLGRTYYVDHNTRTTTWTRP  285
            LP GWE R D  GR YY +H T  T W +P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 56.0 bits (136),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 14/30 (47%), Positives = 17/30 (57%), Gaps = 0/30 (0%)

Query  420  LPSGWEMRLTNTARVYFVDHNTKTTTWDDP  449
            LP GWE R     RVY+ +H T  T W+ P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30



Lambda      K        H        a         alpha
   0.317    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1069457930


Query= TCONS_00001540

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00001541

Length=652
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  168     6e-48
CDD:425499 pfam00168, C2, C2 domain                                   72.7    3e-16
CDD:459800 pfam00397, WW, WW domain. The WW domain is a protein m...  62.9    2e-13


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 168 bits (429),  Expect = 6e-48, Method: Composition-based stats.
 Identities = 66/145 (46%), Positives = 96/145 (66%), Gaps = 6/145 (4%)

Query  512  FLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNP--EHLNYFKFIGRVVGLAIFHRRFL  569
             LLS E+F+P Y LFEY   D+ T   NP S  +P  E L+YFKF+G+++G AI++   L
Sbjct  1    TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  570  DSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLTW--TLDNDIEGVLELTFSVDDEKFGE  627
            D  F   FYK +L + ++L+D+E +D +L+++L     +DND +  L LTF++    FGE
Sbjct  61   DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTIP--VFGE  118

Query  628  RRTIDLKPGGRDIPVTNENKAEYVE  652
             +TI+L P GR+IPVTNENK EY+ 
Sbjct  119  SKTIELIPNGRNIPVTNENKEEYIR  143


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 72.7 bits (179),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (46%), Gaps = 1/92 (1%)

Query  11   LRLTIIAADGLYKRDVFRFPDPFAVATV-GGEQTHTTSVIKKTLNPYWNEMFDLRVNEDS  69
            L +T+I A  L  +D     DP+    +  G+Q   T V+K TLNP WNE F   V +  
Sbjct  3    LTVTVIEAKNLPPKDGNGTSDPYVKVYLLDGKQKKKTKVVKNTLNPVWNETFTFSVPDPE  62

Query  70   ILAIQIFDQKKFKKKDQGFLGVINVRIGDVID  101
               ++I      +     F+G + + + ++  
Sbjct  63   NAVLEIEVYDYDRFGRDDFIGEVRIPLSELDS  94


>CDD:459800 pfam00397, WW, WW domain.  The WW domain is a protein module 
with two highly conserved tryptophans that binds proline-rich 
peptide motifs in vitro.
Length=30

 Score = 62.9 bits (154),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (67%), Gaps = 0/30 (0%)

Query  336  LPPGWEQRTTPEGRPYFVDHNTRTTTWVDP  365
            LPPGWE+R  P+GR Y+ +H T  T W  P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 58.3 bits (142),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 0/30 (0%)

Query  232  LPAGWERREDNLGRTYYVDHNTRTTTWTRP  261
            LP GWE R D  GR YY +H T  T W +P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 56.0 bits (136),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 14/30 (47%), Positives = 17/30 (57%), Gaps = 0/30 (0%)

Query  396  LPSGWEMRLTNTARVYFVDHNTKTTTWDDP  425
            LP GWE R     RVY+ +H T  T W+ P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30



Lambda      K        H        a         alpha
   0.316    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00007223

Length=816
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  390     1e-130
CDD:425499 pfam00168, C2, C2 domain                                   72.4    6e-16 
CDD:459800 pfam00397, WW, WW domain. The WW domain is a protein m...  62.5    2e-13 


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 390 bits (1003),  Expect = 1e-130, Method: Composition-based stats.
 Identities = 141/310 (45%), Positives = 200/310 (65%), Gaps = 15/310 (5%)

Query  512  FLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNP--EHLNYFKFIGRVVGLAIFHRRFL  569
             LLS E+F+P Y LFEY   D+ T   NP S  +P  E L+YFKF+G+++G AI++   L
Sbjct  1    TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  570  DSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLTW--TLDNDIEGVLELTFSVDDEKFGE  627
            D  F   FYK +L + ++L+D+E +D +L+++L     +DND +  L LTF++    FGE
Sbjct  61   DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTIP--VFGE  118

Query  628  RRTIDLKPGGRDIPVTNENKAEYVELVTEWKIVKRVEEQFNAFMSGFNELIPADLVNVFD  687
             +TI+L P GR+IPVTNENK EY+ L  ++++ K +E Q  AF  GF  +IP + +++F 
Sbjct  119  SKTIELIPNGRNIPVTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYSVIPKEALSLFT  178

Query  688  ERELELLIGGIADIDVDDWKKHTDYR-GYQESDEVIQNFWKIVRSWDAEQKSRLLQFTTG  746
              ELELLI G  +IDV+D KK+T+Y  GY ++   IQ FW+I+  +  EQ+   L+F TG
Sbjct  179  PEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPEQRRLFLKFVTG  238

Query  747  TSRIPVNGFKDLQGSDGPRRFTIEKSG--DPAALPKSHTCFNRLDLPPYKSYETLEHKMS  804
            +SR+PV GFK L       +FTI + G  D   LP +HTCFNRL LP Y S E L+ K+ 
Sbjct  239  SSRLPVGGFKSLP------KFTIVRKGGDDDDRLPTAHTCFNRLKLPDYSSKEILKEKLL  292

Query  805  IAVEETLGFG  814
            IA+EE  GFG
Sbjct  293  IAIEEGEGFG  302


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 72.4 bits (178),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (46%), Gaps = 1/92 (1%)

Query  11   LRLTIIAADGLYKRDVFRFPDPFAVATV-GGEQTHTTSVIKKTLNPYWNEMFDLYVNEDS  69
            L +T+I A  L  +D     DP+    +  G+Q   T V+K TLNP WNE F   V +  
Sbjct  3    LTVTVIEAKNLPPKDGNGTSDPYVKVYLLDGKQKKKTKVVKNTLNPVWNETFTFSVPDPE  62

Query  70   ILAIQIFDQKKFKKKDQGFLGVINVRIGDVID  101
               ++I      +     F+G + + + ++  
Sbjct  63   NAVLEIEVYDYDRFGRDDFIGEVRIPLSELDS  94


>CDD:459800 pfam00397, WW, WW domain.  The WW domain is a protein module 
with two highly conserved tryptophans that binds proline-rich 
peptide motifs in vitro.
Length=30

 Score = 62.5 bits (153),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (67%), Gaps = 0/30 (0%)

Query  336  LPPGWEQRTTPEGRPYFVDHNTRTTTWVDP  365
            LPPGWE+R  P+GR Y+ +H T  T W  P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 57.9 bits (141),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 0/30 (0%)

Query  232  LPAGWERREDNLGRTYYVDHNTRTTTWTRP  261
            LP GWE R D  GR YY +H T  T W +P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 56.0 bits (136),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 14/30 (47%), Positives = 17/30 (57%), Gaps = 0/30 (0%)

Query  396  LPSGWEMRLTNTARVYFVDHNTKTTTWDDP  425
            LP GWE R     RVY+ +H T  T W+ P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30



Lambda      K        H        a         alpha
   0.316    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050619744


Query= TCONS_00007222

Length=813
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  390     1e-130
CDD:459800 pfam00397, WW, WW domain. The WW domain is a protein m...  62.5    3e-13 
CDD:425499 pfam00168, C2, C2 domain                                   61.6    3e-12 


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 390 bits (1003),  Expect = 1e-130, Method: Composition-based stats.
 Identities = 141/310 (45%), Positives = 200/310 (65%), Gaps = 15/310 (5%)

Query  509  FLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNP--EHLNYFKFIGRVVGLAIFHRRFL  566
             LLS E+F+P Y LFEY   D+ T   NP S  +P  E L+YFKF+G+++G AI++   L
Sbjct  1    TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  567  DSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLTW--TLDNDIEGVLELTFSVDDEKFGE  624
            D  F   FYK +L + ++L+D+E +D +L+++L     +DND +  L LTF++    FGE
Sbjct  61   DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTIP--VFGE  118

Query  625  RRTIDLKPGGRDIPVTNENKAEYVELVTEWKIVKRVEEQFNAFMSGFNELIPADLVNVFD  684
             +TI+L P GR+IPVTNENK EY+ L  ++++ K +E Q  AF  GF  +IP + +++F 
Sbjct  119  SKTIELIPNGRNIPVTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYSVIPKEALSLFT  178

Query  685  ERELELLIGGIADIDVDDWKKHTDYR-GYQESDEVIQNFWKIVRSWDAEQKSRLLQFTTG  743
              ELELLI G  +IDV+D KK+T+Y  GY ++   IQ FW+I+  +  EQ+   L+F TG
Sbjct  179  PEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPEQRRLFLKFVTG  238

Query  744  TSRIPVNGFKDLQGSDGPRRFTIEKSG--DPAALPKSHTCFNRLDLPPYKSYETLEHKMS  801
            +SR+PV GFK L       +FTI + G  D   LP +HTCFNRL LP Y S E L+ K+ 
Sbjct  239  SSRLPVGGFKSLP------KFTIVRKGGDDDDRLPTAHTCFNRLKLPDYSSKEILKEKLL  292

Query  802  IAVEETLGFG  811
            IA+EE  GFG
Sbjct  293  IAIEEGEGFG  302


>CDD:459800 pfam00397, WW, WW domain.  The WW domain is a protein module 
with two highly conserved tryptophans that binds proline-rich 
peptide motifs in vitro.
Length=30

 Score = 62.5 bits (153),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (67%), Gaps = 0/30 (0%)

Query  333  LPPGWEQRTTPEGRPYFVDHNTRTTTWVDP  362
            LPPGWE+R  P+GR Y+ +H T  T W  P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 57.9 bits (141),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 0/30 (0%)

Query  229  LPAGWERREDNLGRTYYVDHNTRTTTWTRP  258
            LP GWE R D  GR YY +H T  T W +P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 55.6 bits (135),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 14/30 (47%), Positives = 17/30 (57%), Gaps = 0/30 (0%)

Query  393  LPSGWEMRLTNTARVYFVDHNTKTTTWDDP  422
            LP GWE R     RVY+ +H T  T W+ P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 61.6 bits (150),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query  17  GLYKRDVFRFPDPFAVATV-GGEQTHTTSVIKKTLNPYWNEMFDLRVNEDSILAIQIFDQ  75
            L  +D     DP+    +  G+Q   T V+K TLNP WNE F   V +     ++I   
Sbjct  12  NLPPKDGNGTSDPYVKVYLLDGKQKKKTKVVKNTLNPVWNETFTFSVPDPENAVLEIEVY  71

Query  76  KKFKKKDQGFLGVINVRIGDVID  98
              +     F+G + + + ++  
Sbjct  72  DYDRFGRDDFIGEVRIPLSELDS  94



Lambda      K        H        a         alpha
   0.316    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1046254288


Query= TCONS_00001542

Length=676
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  168     7e-48
CDD:425499 pfam00168, C2, C2 domain                                   72.7    3e-16
CDD:459800 pfam00397, WW, WW domain. The WW domain is a protein m...  62.9    1e-13


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 168 bits (429),  Expect = 7e-48, Method: Composition-based stats.
 Identities = 66/145 (46%), Positives = 96/145 (66%), Gaps = 6/145 (4%)

Query  536  FLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNP--EHLNYFKFIGRVVGLAIFHRRFL  593
             LLS E+F+P Y LFEY   D+ T   NP S  +P  E L+YFKF+G+++G AI++   L
Sbjct  1    TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  594  DSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLTW--TLDNDIEGVLELTFSVDDEKFGE  651
            D  F   FYK +L + ++L+D+E +D +L+++L     +DND +  L LTF++    FGE
Sbjct  61   DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTIP--VFGE  118

Query  652  RRTIDLKPGGRDIPVTNENKAEYVE  676
             +TI+L P GR+IPVTNENK EY+ 
Sbjct  119  SKTIELIPNGRNIPVTNENKEEYIR  143


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 72.7 bits (179),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (46%), Gaps = 1/92 (1%)

Query  11   LRLTIIAADGLYKRDVFRFPDPFAVATV-GGEQTHTTSVIKKTLNPYWNEMFDLRVNEDS  69
            L +T+I A  L  +D     DP+    +  G+Q   T V+K TLNP WNE F   V +  
Sbjct  3    LTVTVIEAKNLPPKDGNGTSDPYVKVYLLDGKQKKKTKVVKNTLNPVWNETFTFSVPDPE  62

Query  70   ILAIQIFDQKKFKKKDQGFLGVINVRIGDVID  101
               ++I      +     F+G + + + ++  
Sbjct  63   NAVLEIEVYDYDRFGRDDFIGEVRIPLSELDS  94


>CDD:459800 pfam00397, WW, WW domain.  The WW domain is a protein module 
with two highly conserved tryptophans that binds proline-rich 
peptide motifs in vitro.
Length=30

 Score = 62.9 bits (154),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (67%), Gaps = 0/30 (0%)

Query  360  LPPGWEQRTTPEGRPYFVDHNTRTTTWVDP  389
            LPPGWE+R  P+GR Y+ +H T  T W  P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 58.3 bits (142),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 0/30 (0%)

Query  256  LPAGWERREDNLGRTYYVDHNTRTTTWTRP  285
            LP GWE R D  GR YY +H T  T W +P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 56.0 bits (136),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 14/30 (47%), Positives = 17/30 (57%), Gaps = 0/30 (0%)

Query  420  LPSGWEMRLTNTARVYFVDHNTKTTTWDDP  449
            LP GWE R     RVY+ +H T  T W+ P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 859802570


Query= TCONS_00001543

Length=560
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425499 pfam00168, C2, C2 domain                                   73.1    2e-16
CDD:459800 pfam00397, WW, WW domain. The WW domain is a protein m...  62.5    2e-13


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 73.1 bits (180),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (46%), Gaps = 1/92 (1%)

Query  11   LRLTIIAADGLYKRDVFRFPDPFAVATV-GGEQTHTTSVIKKTLNPYWNEMFDLRVNEDS  69
            L +T+I A  L  +D     DP+    +  G+Q   T V+K TLNP WNE F   V +  
Sbjct  3    LTVTVIEAKNLPPKDGNGTSDPYVKVYLLDGKQKKKTKVVKNTLNPVWNETFTFSVPDPE  62

Query  70   ILAIQIFDQKKFKKKDQGFLGVINVRIGDVID  101
               ++I      +     F+G + + + ++  
Sbjct  63   NAVLEIEVYDYDRFGRDDFIGEVRIPLSELDS  94


>CDD:459800 pfam00397, WW, WW domain.  The WW domain is a protein module 
with two highly conserved tryptophans that binds proline-rich 
peptide motifs in vitro.
Length=30

 Score = 62.5 bits (153),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (67%), Gaps = 0/30 (0%)

Query  336  LPPGWEQRTTPEGRPYFVDHNTRTTTWVDP  365
            LPPGWE+R  P+GR Y+ +H T  T W  P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 57.9 bits (141),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 0/30 (0%)

Query  232  LPAGWERREDNLGRTYYVDHNTRTTTWTRP  261
            LP GWE R D  GR YY +H T  T W +P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 55.6 bits (135),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 14/30 (47%), Positives = 17/30 (57%), Gaps = 0/30 (0%)

Query  396  LPSGWEMRLTNTARVYFVDHNTKTTTWDDP  425
            LP GWE R     RVY+ +H T  T W+ P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30



Lambda      K        H        a         alpha
   0.315    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 699392304


Query= TCONS_00007224

Length=816
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  390     1e-130
CDD:425499 pfam00168, C2, C2 domain                                   72.4    6e-16 
CDD:459800 pfam00397, WW, WW domain. The WW domain is a protein m...  62.5    2e-13 


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 390 bits (1004),  Expect = 1e-130, Method: Composition-based stats.
 Identities = 141/310 (45%), Positives = 200/310 (65%), Gaps = 15/310 (5%)

Query  512  FLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNP--EHLNYFKFIGRVVGLAIFHRRFL  569
             LLS E+F+P Y LFEY   D+ T   NP S  +P  E L+YFKF+G+++G AI++   L
Sbjct  1    TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  570  DSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLTW--TLDNDIEGVLELTFSVDDEKFGE  627
            D  F   FYK +L + ++L+D+E +D +L+++L     +DND +  L LTF++    FGE
Sbjct  61   DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTIP--VFGE  118

Query  628  RRTIDLKPGGRDIPVTNENKAEYVELVTEWKIVKRVEEQFNAFMSGFNELIPADLVNVFD  687
             +TI+L P GR+IPVTNENK EY+ L  ++++ K +E Q  AF  GF  +IP + +++F 
Sbjct  119  SKTIELIPNGRNIPVTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYSVIPKEALSLFT  178

Query  688  ERELELLIGGIADIDVDDWKKHTDYR-GYQESDEVIQNFWKIVRSWDAEQKSRLLQFTTG  746
              ELELLI G  +IDV+D KK+T+Y  GY ++   IQ FW+I+  +  EQ+   L+F TG
Sbjct  179  PEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPEQRRLFLKFVTG  238

Query  747  TSRIPVNGFKDLQGSDGPRRFTIEKSG--DPAALPKSHTCFNRLDLPPYKSYETLEHKMS  804
            +SR+PV GFK L       +FTI + G  D   LP +HTCFNRL LP Y S E L+ K+ 
Sbjct  239  SSRLPVGGFKSLP------KFTIVRKGGDDDDRLPTAHTCFNRLKLPDYSSKEILKEKLL  292

Query  805  IAVEETLGFG  814
            IA+EE  GFG
Sbjct  293  IAIEEGEGFG  302


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 72.4 bits (178),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (46%), Gaps = 1/92 (1%)

Query  11   LRLTIIAADGLYKRDVFRFPDPFAVATV-GGEQTHTTSVIKKTLNPYWNEMFDLRVNEDS  69
            L +T+I A  L  +D     DP+    +  G+Q   T V+K TLNP WNE F   V +  
Sbjct  3    LTVTVIEAKNLPPKDGNGTSDPYVKVYLLDGKQKKKTKVVKNTLNPVWNETFTFSVPDPE  62

Query  70   ILAIQIFDQKKFKKKDQGFLGVINVRIGDVID  101
               ++I      +     F+G + + + ++  
Sbjct  63   NAVLEIEVYDYDRFGRDDFIGEVRIPLSELDS  94


>CDD:459800 pfam00397, WW, WW domain.  The WW domain is a protein module 
with two highly conserved tryptophans that binds proline-rich 
peptide motifs in vitro.
Length=30

 Score = 62.5 bits (153),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (67%), Gaps = 0/30 (0%)

Query  336  LPPGWEQRTTPEGRPYFVDHNTRTTTWVDP  365
            LPPGWE+R  P+GR Y+ +H T  T W  P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 57.9 bits (141),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 0/30 (0%)

Query  232  LPAGWERREDNLGRTYYVDHNTRTTTWTRP  261
            LP GWE R D  GR YY +H T  T W +P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 56.0 bits (136),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 14/30 (47%), Positives = 17/30 (57%), Gaps = 0/30 (0%)

Query  396  LPSGWEMRLTNTARVYFVDHNTKTTTWDDP  425
            LP GWE R     RVY+ +H T  T W+ P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30



Lambda      K        H        a         alpha
   0.316    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050619744


Query= TCONS_00001544

Length=837
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  390     2e-130
CDD:459800 pfam00397, WW, WW domain. The WW domain is a protein m...  62.5    2e-13 
CDD:425499 pfam00168, C2, C2 domain                                   61.6    3e-12 


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 390 bits (1004),  Expect = 2e-130, Method: Composition-based stats.
 Identities = 141/310 (45%), Positives = 200/310 (65%), Gaps = 15/310 (5%)

Query  533  FLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNP--EHLNYFKFIGRVVGLAIFHRRFL  590
             LLS E+F+P Y LFEY   D+ T   NP S  +P  E L+YFKF+G+++G AI++   L
Sbjct  1    TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  591  DSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLTW--TLDNDIEGVLELTFSVDDEKFGE  648
            D  F   FYK +L + ++L+D+E +D +L+++L     +DND +  L LTF++    FGE
Sbjct  61   DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTIP--VFGE  118

Query  649  RRTIDLKPGGRDIPVTNENKAEYVELVTEWKIVKRVEEQFNAFMSGFNELIPADLVNVFD  708
             +TI+L P GR+IPVTNENK EY+ L  ++++ K +E Q  AF  GF  +IP + +++F 
Sbjct  119  SKTIELIPNGRNIPVTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYSVIPKEALSLFT  178

Query  709  ERELELLIGGIADIDVDDWKKHTDYR-GYQESDEVIQNFWKIVRSWDAEQKSRLLQFTTG  767
              ELELLI G  +IDV+D KK+T+Y  GY ++   IQ FW+I+  +  EQ+   L+F TG
Sbjct  179  PEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPEQRRLFLKFVTG  238

Query  768  TSRIPVNGFKDLQGSDGPRRFTIEKSG--DPAALPKSHTCFNRLDLPPYKSYETLEHKMS  825
            +SR+PV GFK L       +FTI + G  D   LP +HTCFNRL LP Y S E L+ K+ 
Sbjct  239  SSRLPVGGFKSLP------KFTIVRKGGDDDDRLPTAHTCFNRLKLPDYSSKEILKEKLL  292

Query  826  IAVEETLGFG  835
            IA+EE  GFG
Sbjct  293  IAIEEGEGFG  302


>CDD:459800 pfam00397, WW, WW domain.  The WW domain is a protein module 
with two highly conserved tryptophans that binds proline-rich 
peptide motifs in vitro.
Length=30

 Score = 62.5 bits (153),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (67%), Gaps = 0/30 (0%)

Query  357  LPPGWEQRTTPEGRPYFVDHNTRTTTWVDP  386
            LPPGWE+R  P+GR Y+ +H T  T W  P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 57.9 bits (141),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 0/30 (0%)

Query  253  LPAGWERREDNLGRTYYVDHNTRTTTWTRP  282
            LP GWE R D  GR YY +H T  T W +P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 56.0 bits (136),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 14/30 (47%), Positives = 17/30 (57%), Gaps = 0/30 (0%)

Query  417  LPSGWEMRLTNTARVYFVDHNTKTTTWDDP  446
            LP GWE R     RVY+ +H T  T W+ P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 61.6 bits (150),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query  17  GLYKRDVFRFPDPFAVATV-GGEQTHTTSVIKKTLNPYWNEMFDLRVNEDSILAIQIFDQ  75
            L  +D     DP+    +  G+Q   T V+K TLNP WNE F   V +     ++I   
Sbjct  12  NLPPKDGNGTSDPYVKVYLLDGKQKKKTKVVKNTLNPVWNETFTFSVPDPENAVLEIEVY  71

Query  76  KKFKKKDQGFLGVINVRIGDVID  98
              +     F+G + + + ++  
Sbjct  72  DYDRFGRDDFIGEVRIPLSELDS  94



Lambda      K        H        a         alpha
   0.317    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1065151388


Query= TCONS_00001545

Length=679
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  168     8e-48
CDD:425499 pfam00168, C2, C2 domain                                   73.1    3e-16
CDD:459800 pfam00397, WW, WW domain. The WW domain is a protein m...  62.9    1e-13


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 168 bits (429),  Expect = 8e-48, Method: Composition-based stats.
 Identities = 66/145 (46%), Positives = 96/145 (66%), Gaps = 6/145 (4%)

Query  536  FLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNP--EHLNYFKFIGRVVGLAIFHRRFL  593
             LLS E+F+P Y LFEY   D+ T   NP S  +P  E L+YFKF+G+++G AI++   L
Sbjct  1    TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  594  DSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLTW--TLDNDIEGVLELTFSVDDEKFGE  651
            D  F   FYK +L + ++L+D+E +D +L+++L     +DND +  L LTF++    FGE
Sbjct  61   DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTIP--VFGE  118

Query  652  RRTIDLKPGGRDIPVTNENKAEYVE  676
             +TI+L P GR+IPVTNENK EY+ 
Sbjct  119  SKTIELIPNGRNIPVTNENKEEYIR  143


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 73.1 bits (180),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (46%), Gaps = 1/92 (1%)

Query  11   LRLTIIAADGLYKRDVFRFPDPFAVATV-GGEQTHTTSVIKKTLNPYWNEMFDLRVNEDS  69
            L +T+I A  L  +D     DP+    +  G+Q   T V+K TLNP WNE F   V +  
Sbjct  3    LTVTVIEAKNLPPKDGNGTSDPYVKVYLLDGKQKKKTKVVKNTLNPVWNETFTFSVPDPE  62

Query  70   ILAIQIFDQKKFKKKDQGFLGVINVRIGDVID  101
               ++I      +     F+G + + + ++  
Sbjct  63   NAVLEIEVYDYDRFGRDDFIGEVRIPLSELDS  94


>CDD:459800 pfam00397, WW, WW domain.  The WW domain is a protein module 
with two highly conserved tryptophans that binds proline-rich 
peptide motifs in vitro.
Length=30

 Score = 62.9 bits (154),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (67%), Gaps = 0/30 (0%)

Query  360  LPPGWEQRTTPEGRPYFVDHNTRTTTWVDP  389
            LPPGWE+R  P+GR Y+ +H T  T W  P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 58.3 bits (142),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 0/30 (0%)

Query  256  LPAGWERREDNLGRTYYVDHNTRTTTWTRP  285
            LP GWE R D  GR YY +H T  T W +P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 56.0 bits (136),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 14/30 (47%), Positives = 17/30 (57%), Gaps = 0/30 (0%)

Query  420  LPSGWEMRLTNTARVYFVDHNTKTTTWDDP  449
            LP GWE R     RVY+ +H T  T W+ P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 864226940


Query= TCONS_00007225

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459800 pfam00397, WW, WW domain. The WW domain is a protein m...  61.4    4e-13


>CDD:459800 pfam00397, WW, WW domain.  The WW domain is a protein module 
with two highly conserved tryptophans that binds proline-rich 
peptide motifs in vitro.
Length=30

 Score = 61.4 bits (150),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (67%), Gaps = 0/30 (0%)

Query  228  LPPGWEQRTTPEGRPYFVDHNTRTTTWVDP  257
            LPPGWE+R  P+GR Y+ +H T  T W  P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 56.7 bits (138),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 0/30 (0%)

Query  124  LPAGWERREDNLGRTYYVDHNTRTTTWTRP  153
            LP GWE R D  GR YY +H T  T W +P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30


 Score = 54.8 bits (133),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 14/30 (47%), Positives = 17/30 (57%), Gaps = 0/30 (0%)

Query  288  LPSGWEMRLTNTARVYFVDHNTKTTTWDDP  317
            LP GWE R     RVY+ +H T  T W+ P
Sbjct  1    LPPGWEERWDPDGRVYYYNHETGETQWEKP  30



Lambda      K        H        a         alpha
   0.313    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00001546

Length=390


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00001547

Length=724


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 916745760


Query= TCONS_00007227

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.118    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00001548

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.116    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00001550

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00001549

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00007230

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00007229

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00007228

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00007232

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00007231

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00007233

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00001551

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00001552

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00001553

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00007234

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00001554

Length=143
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461003 pfam03645, Tctex-1, Tctex-1 family. Tctex-1 is a dynei...  94.9    4e-27


>CDD:461003 pfam03645, Tctex-1, Tctex-1 family.  Tctex-1 is a dynein light 
chain. It has been shown that Tctex-1 can bind to the cytoplasmic 
tail of rhodopsin. C-terminal rhodopsin mutations responsible 
for retinitis pigmentosa inhibit this interaction.
Length=96

 Score = 94.9 bits (237),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 26/114 (23%)

Query  24   KACDSALKSAEGYEHAKVGEWNSQIINTILKSLIAATAPESPSTSPPYRFTVNSTIVQQG  83
            +  +  L   E Y+H KV +W  +I   IL  L              Y++ VN TI Q+ 
Sbjct  8    EVLEEVLGGGETYDHEKVPQWTKEISEEILDRLKEL-------GFKRYKYIVNVTIGQKN  60

Query  84   LIDKSSAADGAVSNAGKRGMHSASGAFWDVNRDGMWTFKYPGAEERGLDVIVSV  137
                     G        G+H AS   WD   DG  ++K+   E + L  +V+V
Sbjct  61   ---------GQ-------GVHVASRCLWDPETDGYASYKF---ENKSLFAVVTV  95



Lambda      K        H        a         alpha
   0.316    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00001556

Length=684


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 871600890


Query= TCONS_00001555

Length=600


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 759169424


Query= TCONS_00001557

Length=684


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 871600890


Query= TCONS_00001558

Length=491


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 605626400


Query= TCONS_00007235

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.123    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00001559

Length=453


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00001565

Length=453


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00001560

Length=453


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00001562

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00007236

Length=453


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00001563

Length=475


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 590476040


Query= TCONS_00007237

Length=453


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00001564

Length=284


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00001566

Length=453


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00001567

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00001568

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00001569

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.122    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00001570

Length=521


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 651048380


Query= TCONS_00007238

Length=521


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 651048380


Query= TCONS_00001571

Length=779
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461998 pfam06741, LsmAD, LsmAD domain. This domain is found a...  124     5e-35


>CDD:461998 pfam06741, LsmAD, LsmAD domain.  This domain is found associated 
with Lsm domain.
Length=65

 Score = 124 bits (315),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 47/66 (71%), Positives = 53/66 (80%), Gaps = 1/66 (2%)

Query  40   FGATSSYDENIYTTRIDRSDPSYKQREAEAARIAREIESTNVDNIHVREERGLAPVDDSG  99
            FG  S+YDEN+YTT++DRS P YK+REAEA RIAREIE +   N HV EERGL  VDDSG
Sbjct  1    FGVKSTYDENLYTTKLDRSSPDYKEREAEAERIAREIEGSASTNAHVAEERGLD-VDDSG  59

Query  100  LDEEDK  105
            LDEEDK
Sbjct  60   LDEEDK  65



Lambda      K        H        a         alpha
   0.310    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 996779120


Query= TCONS_00001572

Length=859
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427585 pfam03915, AIP3, Actin interacting protein 3               629     0.0  


>CDD:427585 pfam03915, AIP3, Actin interacting protein 3.  
Length=407

 Score = 629 bits (1624),  Expect = 0.0, Method: Composition-based stats.
 Identities = 250/438 (57%), Positives = 310/438 (71%), Gaps = 31/438 (7%)

Query  312  FLQYKSKIKKYVLPEGYSGLTIGRLQLAFIEKFAWNTHNNGVDLPEIYIQDPISGVRHEL  371
            FLQ   K+KK VLP     LTI  L+L F+EKFA++    G D PEIYIQDP+SGVR+EL
Sbjct  1    FLQLGRKVKKVVLPLP---LTIASLRLLFVEKFAYSP--GGDDFPEIYIQDPVSGVRYEL  55

Query  372  EDLNDVKDRSVLVLNVDILDEVKKHFDDELGGVRRLIEGVKGTLEGQENIIQRVSDRQLE  431
            EDL+DVKD SVL LN++ LDEVKKH D+ +G + + I+ +K ++E Q   IQ VSDRQ E
Sbjct  56   EDLSDVKDGSVLSLNIEPLDEVKKHIDESIGSLLQEIKELKTSIESQPTSIQPVSDRQQE  115

Query  432  AAKEIARLAAAPPVSIPTSLPDGSARKGPITGSRSQLAELQSLKRDLAVLRQTYSNFSSD  491
            AAKE A  + A                      ++QL E+Q+L+RDLAVLRQ YS+F SD
Sbjct  116  AAKERASESIAK------------------KDLKTQLDEVQNLRRDLAVLRQLYSDFKSD  157

Query  492  IASSMNAIRAKANFVKSAAADVAVPSYEGDAGRARVNAGKKELADESERLVGRVDDLQDL  551
            I SS++ IR KA  VKSA+    + S  G + RA +  GKK+L+++S+ L+ +VDDLQDL
Sbjct  158  IKSSISTIREKAKKVKSAS----LASTSGSSNRAYIEKGKKKLSEDSDNLLTKVDDLQDL  213

Query  552  VEDLRKDVVSRGVRPLPRQLESVSKEISAVTKELKKMQEFLKREKPIWTKIWEKELQLVC  611
            +EDLRKDV  RGVRP P+QLESV+KEI A TKELKKM+E++K EKPIW KIWE ELQ VC
Sbjct  214  IEDLRKDVAQRGVRPSPKQLESVAKEIKAATKELKKMEEYIKTEKPIWKKIWESELQKVC  273

Query  612  EERDQLTMQEDLAADLEDDLEKAAQTFALVEQATKQQALQHNVNGGVALRNTSRNVVIDP  671
            EE+  LT+QEDL ADL++DLEKA++TF LVEQ T++Q      N      N  R  + +P
Sbjct  274  EEQQFLTLQEDLIADLKEDLEKASETFGLVEQCTEEQ----EKNPAKGKVNKPRLPIPEP  329

Query  672  AVDPMKAKDDVLGEVRALQPNHESRLEAIERAEKARQKELENRRIGLFQKELGAFVQEGK  731
              DP + KD VL EVRALQP+HESRLEAIERAEK R+KELE RR+  FQKELG FV+E K
Sbjct  330  GEDPHEGKDTVLLEVRALQPDHESRLEAIERAEKLREKELEARRVDEFQKELGEFVEEKK  389

Query  732  LKKSGGVEEAERQRRVKD  749
            LKKSGGVEE ER R+ KD
Sbjct  390  LKKSGGVEEVERLRKQKD  407



Lambda      K        H        a         alpha
   0.307    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1096732696


Query= TCONS_00001573

Length=1055
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427585 pfam03915, AIP3, Actin interacting protein 3               631     0.0  


>CDD:427585 pfam03915, AIP3, Actin interacting protein 3.  
Length=407

 Score = 631 bits (1631),  Expect = 0.0, Method: Composition-based stats.
 Identities = 250/438 (57%), Positives = 310/438 (71%), Gaps = 31/438 (7%)

Query  508  FLQYKSKIKKYVLPEGYSGLTIGRLQLAFIEKFAWNTHNNGVDLPEIYIQDPISGVRHEL  567
            FLQ   K+KK VLP     LTI  L+L F+EKFA++    G D PEIYIQDP+SGVR+EL
Sbjct  1    FLQLGRKVKKVVLPLP---LTIASLRLLFVEKFAYSP--GGDDFPEIYIQDPVSGVRYEL  55

Query  568  EDLNDVKDRSVLVLNVDILDEVKKHFDDELGGVRRLIEGVKGTLEGQENIIQRVSDRQLE  627
            EDL+DVKD SVL LN++ LDEVKKH D+ +G + + I+ +K ++E Q   IQ VSDRQ E
Sbjct  56   EDLSDVKDGSVLSLNIEPLDEVKKHIDESIGSLLQEIKELKTSIESQPTSIQPVSDRQQE  115

Query  628  AAKEIARLAAAPPVSIPTSLPDGSARKGPITGSRSQLAELQSLKRDLAVLRQTYSNFSSD  687
            AAKE A  + A                      ++QL E+Q+L+RDLAVLRQ YS+F SD
Sbjct  116  AAKERASESIAK------------------KDLKTQLDEVQNLRRDLAVLRQLYSDFKSD  157

Query  688  IASSMNAIRAKANFVKSAAADVAVPSYEGDAGRARVNAGKKELADESERLVGRVDDLQDL  747
            I SS++ IR KA  VKSA+    + S  G + RA +  GKK+L+++S+ L+ +VDDLQDL
Sbjct  158  IKSSISTIREKAKKVKSAS----LASTSGSSNRAYIEKGKKKLSEDSDNLLTKVDDLQDL  213

Query  748  VEDLRKDVVSRGVRPLPRQLESVSKEISAVTKELKKMQEFLKREKPIWTKIWEKELQLVC  807
            +EDLRKDV  RGVRP P+QLESV+KEI A TKELKKM+E++K EKPIW KIWE ELQ VC
Sbjct  214  IEDLRKDVAQRGVRPSPKQLESVAKEIKAATKELKKMEEYIKTEKPIWKKIWESELQKVC  273

Query  808  EERDQLTMQEDLAADLEDDLEKAAQTFALVEQATKQQALQHNVNGGVALRNTSRNVVIDP  867
            EE+  LT+QEDL ADL++DLEKA++TF LVEQ T++Q      N      N  R  + +P
Sbjct  274  EEQQFLTLQEDLIADLKEDLEKASETFGLVEQCTEEQ----EKNPAKGKVNKPRLPIPEP  329

Query  868  AVDPMKAKDDVLGEVRALQPNHESRLEAIERAEKARQKELENRRIGLFQKELGAFVQEGK  927
              DP + KD VL EVRALQP+HESRLEAIERAEK R+KELE RR+  FQKELG FV+E K
Sbjct  330  GEDPHEGKDTVLLEVRALQPDHESRLEAIERAEKLREKELEARRVDEFQKELGEFVEEKK  389

Query  928  LKKSGGVEEAERQRRVKD  945
            LKKSGGVEE ER R+ KD
Sbjct  390  LKKSGGVEEVERLRKQKD  407



Lambda      K        H        a         alpha
   0.308    0.125    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 1357825084


Query= TCONS_00001575

Length=1025
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427585 pfam03915, AIP3, Actin interacting protein 3               630     0.0  


>CDD:427585 pfam03915, AIP3, Actin interacting protein 3.  
Length=407

 Score = 630 bits (1627),  Expect = 0.0, Method: Composition-based stats.
 Identities = 250/438 (57%), Positives = 310/438 (71%), Gaps = 31/438 (7%)

Query  478  FLQYKSKIKKYVLPEGYSGLTIGRLQLAFIEKFAWNTHNNGVDLPEIYIQDPISGVRHEL  537
            FLQ   K+KK VLP     LTI  L+L F+EKFA++    G D PEIYIQDP+SGVR+EL
Sbjct  1    FLQLGRKVKKVVLPLP---LTIASLRLLFVEKFAYSP--GGDDFPEIYIQDPVSGVRYEL  55

Query  538  EDLNDVKDRSVLVLNVDILDEVKKHFDDELGGVRRLIEGVKGTLEGQENIIQRVSDRQLE  597
            EDL+DVKD SVL LN++ LDEVKKH D+ +G + + I+ +K ++E Q   IQ VSDRQ E
Sbjct  56   EDLSDVKDGSVLSLNIEPLDEVKKHIDESIGSLLQEIKELKTSIESQPTSIQPVSDRQQE  115

Query  598  AAKEIARLAAAPPVSIPTSLPDGSARKGPITGSRSQLAELQSLKRDLAVLRQTYSNFSSD  657
            AAKE A  + A                      ++QL E+Q+L+RDLAVLRQ YS+F SD
Sbjct  116  AAKERASESIAK------------------KDLKTQLDEVQNLRRDLAVLRQLYSDFKSD  157

Query  658  IASSMNAIRAKANFVKSAAADVAVPSYEGDAGRARVNAGKKELADESERLVGRVDDLQDL  717
            I SS++ IR KA  VKSA+    + S  G + RA +  GKK+L+++S+ L+ +VDDLQDL
Sbjct  158  IKSSISTIREKAKKVKSAS----LASTSGSSNRAYIEKGKKKLSEDSDNLLTKVDDLQDL  213

Query  718  VEDLRKDVVSRGVRPLPRQLESVSKEISAVTKELKKMQEFLKREKPIWTKIWEKELQLVC  777
            +EDLRKDV  RGVRP P+QLESV+KEI A TKELKKM+E++K EKPIW KIWE ELQ VC
Sbjct  214  IEDLRKDVAQRGVRPSPKQLESVAKEIKAATKELKKMEEYIKTEKPIWKKIWESELQKVC  273

Query  778  EERDQLTMQEDLAADLEDDLEKAAQTFALVEQATKQQALQHNVNGGVALRNTSRNVVIDP  837
            EE+  LT+QEDL ADL++DLEKA++TF LVEQ T++Q      N      N  R  + +P
Sbjct  274  EEQQFLTLQEDLIADLKEDLEKASETFGLVEQCTEEQ----EKNPAKGKVNKPRLPIPEP  329

Query  838  AVDPMKAKDDVLGEVRALQPNHESRLEAIERAEKARQKELENRRIGLFQKELGAFVQEGK  897
              DP + KD VL EVRALQP+HESRLEAIERAEK R+KELE RR+  FQKELG FV+E K
Sbjct  330  GEDPHEGKDTVLLEVRALQPDHESRLEAIERAEKLREKELEARRVDEFQKELGEFVEEKK  389

Query  898  LKKSGGVEEAERQRRVKD  915
            LKKSGGVEE ER R+ KD
Sbjct  390  LKKSGGVEEVERLRKQKD  407



Lambda      K        H        a         alpha
   0.308    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1315348804


Query= TCONS_00001574

Length=1025
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427585 pfam03915, AIP3, Actin interacting protein 3               630     0.0  


>CDD:427585 pfam03915, AIP3, Actin interacting protein 3.  
Length=407

 Score = 630 bits (1627),  Expect = 0.0, Method: Composition-based stats.
 Identities = 250/438 (57%), Positives = 310/438 (71%), Gaps = 31/438 (7%)

Query  478  FLQYKSKIKKYVLPEGYSGLTIGRLQLAFIEKFAWNTHNNGVDLPEIYIQDPISGVRHEL  537
            FLQ   K+KK VLP     LTI  L+L F+EKFA++    G D PEIYIQDP+SGVR+EL
Sbjct  1    FLQLGRKVKKVVLPLP---LTIASLRLLFVEKFAYSP--GGDDFPEIYIQDPVSGVRYEL  55

Query  538  EDLNDVKDRSVLVLNVDILDEVKKHFDDELGGVRRLIEGVKGTLEGQENIIQRVSDRQLE  597
            EDL+DVKD SVL LN++ LDEVKKH D+ +G + + I+ +K ++E Q   IQ VSDRQ E
Sbjct  56   EDLSDVKDGSVLSLNIEPLDEVKKHIDESIGSLLQEIKELKTSIESQPTSIQPVSDRQQE  115

Query  598  AAKEIARLAAAPPVSIPTSLPDGSARKGPITGSRSQLAELQSLKRDLAVLRQTYSNFSSD  657
            AAKE A  + A                      ++QL E+Q+L+RDLAVLRQ YS+F SD
Sbjct  116  AAKERASESIAK------------------KDLKTQLDEVQNLRRDLAVLRQLYSDFKSD  157

Query  658  IASSMNAIRAKANFVKSAAADVAVPSYEGDAGRARVNAGKKELADESERLVGRVDDLQDL  717
            I SS++ IR KA  VKSA+    + S  G + RA +  GKK+L+++S+ L+ +VDDLQDL
Sbjct  158  IKSSISTIREKAKKVKSAS----LASTSGSSNRAYIEKGKKKLSEDSDNLLTKVDDLQDL  213

Query  718  VEDLRKDVVSRGVRPLPRQLESVSKEISAVTKELKKMQEFLKREKPIWTKIWEKELQLVC  777
            +EDLRKDV  RGVRP P+QLESV+KEI A TKELKKM+E++K EKPIW KIWE ELQ VC
Sbjct  214  IEDLRKDVAQRGVRPSPKQLESVAKEIKAATKELKKMEEYIKTEKPIWKKIWESELQKVC  273

Query  778  EERDQLTMQEDLAADLEDDLEKAAQTFALVEQATKQQALQHNVNGGVALRNTSRNVVIDP  837
            EE+  LT+QEDL ADL++DLEKA++TF LVEQ T++Q      N      N  R  + +P
Sbjct  274  EEQQFLTLQEDLIADLKEDLEKASETFGLVEQCTEEQ----EKNPAKGKVNKPRLPIPEP  329

Query  838  AVDPMKAKDDVLGEVRALQPNHESRLEAIERAEKARQKELENRRIGLFQKELGAFVQEGK  897
              DP + KD VL EVRALQP+HESRLEAIERAEK R+KELE RR+  FQKELG FV+E K
Sbjct  330  GEDPHEGKDTVLLEVRALQPDHESRLEAIERAEKLREKELEARRVDEFQKELGEFVEEKK  389

Query  898  LKKSGGVEEAERQRRVKD  915
            LKKSGGVEE ER R+ KD
Sbjct  390  LKKSGGVEEVERLRKQKD  407



Lambda      K        H        a         alpha
   0.308    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1315348804


Query= TCONS_00001576

Length=859
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427585 pfam03915, AIP3, Actin interacting protein 3               629     0.0  


>CDD:427585 pfam03915, AIP3, Actin interacting protein 3.  
Length=407

 Score = 629 bits (1624),  Expect = 0.0, Method: Composition-based stats.
 Identities = 250/438 (57%), Positives = 310/438 (71%), Gaps = 31/438 (7%)

Query  312  FLQYKSKIKKYVLPEGYSGLTIGRLQLAFIEKFAWNTHNNGVDLPEIYIQDPISGVRHEL  371
            FLQ   K+KK VLP     LTI  L+L F+EKFA++    G D PEIYIQDP+SGVR+EL
Sbjct  1    FLQLGRKVKKVVLPLP---LTIASLRLLFVEKFAYSP--GGDDFPEIYIQDPVSGVRYEL  55

Query  372  EDLNDVKDRSVLVLNVDILDEVKKHFDDELGGVRRLIEGVKGTLEGQENIIQRVSDRQLE  431
            EDL+DVKD SVL LN++ LDEVKKH D+ +G + + I+ +K ++E Q   IQ VSDRQ E
Sbjct  56   EDLSDVKDGSVLSLNIEPLDEVKKHIDESIGSLLQEIKELKTSIESQPTSIQPVSDRQQE  115

Query  432  AAKEIARLAAAPPVSIPTSLPDGSARKGPITGSRSQLAELQSLKRDLAVLRQTYSNFSSD  491
            AAKE A  + A                      ++QL E+Q+L+RDLAVLRQ YS+F SD
Sbjct  116  AAKERASESIAK------------------KDLKTQLDEVQNLRRDLAVLRQLYSDFKSD  157

Query  492  IASSMNAIRAKANFVKSAAADVAVPSYEGDAGRARVNAGKKELADESERLVGRVDDLQDL  551
            I SS++ IR KA  VKSA+    + S  G + RA +  GKK+L+++S+ L+ +VDDLQDL
Sbjct  158  IKSSISTIREKAKKVKSAS----LASTSGSSNRAYIEKGKKKLSEDSDNLLTKVDDLQDL  213

Query  552  VEDLRKDVVSRGVRPLPRQLESVSKEISAVTKELKKMQEFLKREKPIWTKIWEKELQLVC  611
            +EDLRKDV  RGVRP P+QLESV+KEI A TKELKKM+E++K EKPIW KIWE ELQ VC
Sbjct  214  IEDLRKDVAQRGVRPSPKQLESVAKEIKAATKELKKMEEYIKTEKPIWKKIWESELQKVC  273

Query  612  EERDQLTMQEDLAADLEDDLEKAAQTFALVEQATKQQALQHNVNGGVALRNTSRNVVIDP  671
            EE+  LT+QEDL ADL++DLEKA++TF LVEQ T++Q      N      N  R  + +P
Sbjct  274  EEQQFLTLQEDLIADLKEDLEKASETFGLVEQCTEEQ----EKNPAKGKVNKPRLPIPEP  329

Query  672  AVDPMKAKDDVLGEVRALQPNHESRLEAIERAEKARQKELENRRIGLFQKELGAFVQEGK  731
              DP + KD VL EVRALQP+HESRLEAIERAEK R+KELE RR+  FQKELG FV+E K
Sbjct  330  GEDPHEGKDTVLLEVRALQPDHESRLEAIERAEKLREKELEARRVDEFQKELGEFVEEKK  389

Query  732  LKKSGGVEEAERQRRVKD  749
            LKKSGGVEE ER R+ KD
Sbjct  390  LKKSGGVEEVERLRKQKD  407



Lambda      K        H        a         alpha
   0.307    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1096732696


Query= TCONS_00001579

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00001580

Length=404


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00001577

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00001578

Length=404


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00001581

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00001583

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        98.1    2e-26


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 98.1 bits (245),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query  7   KPLPFAYQFAAGAVAGVSEILVMYPLDVVKTRVQLQSNVVTSAAEERYNGMFDCFRKIVK  66
             L F     AG +AG   + V YPLDVVKTR+Q+Q     S    +  G+ DCF+KI K
Sbjct  1   SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKS----KGRGILDCFKKIYK  56

Query  67  NEGFSRLYRGISAPILMEAPKRATKFAAND  96
            EG   LY+G+   +L  AP  A  F   +
Sbjct  57  EEGIRGLYKGLLPNLLRVAPAAAIYFGTYE  86


 Score = 85.4 bits (212),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query  212  NDLIAGTIGGIAGTVLNTPMDVVKSRIQNSPKVAGQVPKYNWAWPAVGTVMKEEGFGALY  271
              L+AG I G     +  P+DVVK+R+Q          K          + KEEG   LY
Sbjct  7    ASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKS--KGRGILDCFKKIYKEEGIRGLY  64

Query  272  KGFIPKVLRLGPGGGILLVVFTGVMDFFRK  301
            KG +P +LR+ P   I    +  +     K
Sbjct  65   KGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 74.2 bits (183),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 28/76 (37%), Positives = 35/76 (46%), Gaps = 2/76 (3%)

Query  117  VLTGATAGATEAFVVVPFELVKIRLQ--DRASAGKYNGMLDVVRKIIATEGPLAMYNGLE  174
            +L G  AGA    V  P ++VK RLQ    +   K  G+LD  +KI   EG   +Y GL 
Sbjct  9    LLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLL  68

Query  175  STLWRHILWNGGYFGC  190
              L R       YFG 
Sbjct  69   PNLLRVAPAAAIYFGT  84



Lambda      K        H        a         alpha
   0.321    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00001584

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        98.1    2e-26


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 98.1 bits (245),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query  7   KPLPFAYQFAAGAVAGVSEILVMYPLDVVKTRVQLQSNVVTSAAEERYNGMFDCFRKIVK  66
             L F     AG +AG   + V YPLDVVKTR+Q+Q     S    +  G+ DCF+KI K
Sbjct  1   SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKS----KGRGILDCFKKIYK  56

Query  67  NEGFSRLYRGISAPILMEAPKRATKFAAND  96
            EG   LY+G+   +L  AP  A  F   +
Sbjct  57  EEGIRGLYKGLLPNLLRVAPAAAIYFGTYE  86


 Score = 85.4 bits (212),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query  212  NDLIAGTIGGIAGTVLNTPMDVVKSRIQNSPKVAGQVPKYNWAWPAVGTVMKEEGFGALY  271
              L+AG I G     +  P+DVVK+R+Q          K          + KEEG   LY
Sbjct  7    ASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKS--KGRGILDCFKKIYKEEGIRGLY  64

Query  272  KGFIPKVLRLGPGGGILLVVFTGVMDFFRK  301
            KG +P +LR+ P   I    +  +     K
Sbjct  65   KGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 74.2 bits (183),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 28/76 (37%), Positives = 35/76 (46%), Gaps = 2/76 (3%)

Query  117  VLTGATAGATEAFVVVPFELVKIRLQ--DRASAGKYNGMLDVVRKIIATEGPLAMYNGLE  174
            +L G  AGA    V  P ++VK RLQ    +   K  G+LD  +KI   EG   +Y GL 
Sbjct  9    LLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLL  68

Query  175  STLWRHILWNGGYFGC  190
              L R       YFG 
Sbjct  69   PNLLRVAPAAAIYFGT  84



Lambda      K        H        a         alpha
   0.321    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00007239

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        98.1    2e-26


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 98.1 bits (245),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query  7   KPLPFAYQFAAGAVAGVSEILVMYPLDVVKTRVQLQSNVVTSAAEERYNGMFDCFRKIVK  66
             L F     AG +AG   + V YPLDVVKTR+Q+Q     S    +  G+ DCF+KI K
Sbjct  1   SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKS----KGRGILDCFKKIYK  56

Query  67  NEGFSRLYRGISAPILMEAPKRATKFAAND  96
            EG   LY+G+   +L  AP  A  F   +
Sbjct  57  EEGIRGLYKGLLPNLLRVAPAAAIYFGTYE  86


 Score = 85.4 bits (212),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query  212  NDLIAGTIGGIAGTVLNTPMDVVKSRIQNSPKVAGQVPKYNWAWPAVGTVMKEEGFGALY  271
              L+AG I G     +  P+DVVK+R+Q          K          + KEEG   LY
Sbjct  7    ASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKS--KGRGILDCFKKIYKEEGIRGLY  64

Query  272  KGFIPKVLRLGPGGGILLVVFTGVMDFFRK  301
            KG +P +LR+ P   I    +  +     K
Sbjct  65   KGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 74.2 bits (183),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 28/76 (37%), Positives = 35/76 (46%), Gaps = 2/76 (3%)

Query  117  VLTGATAGATEAFVVVPFELVKIRLQ--DRASAGKYNGMLDVVRKIIATEGPLAMYNGLE  174
            +L G  AGA    V  P ++VK RLQ    +   K  G+LD  +KI   EG   +Y GL 
Sbjct  9    LLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLL  68

Query  175  STLWRHILWNGGYFGC  190
              L R       YFG 
Sbjct  69   PNLLRVAPAAAIYFGT  84



Lambda      K        H        a         alpha
   0.321    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00001585

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        98.1    2e-26


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 98.1 bits (245),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query  7   KPLPFAYQFAAGAVAGVSEILVMYPLDVVKTRVQLQSNVVTSAAEERYNGMFDCFRKIVK  66
             L F     AG +AG   + V YPLDVVKTR+Q+Q     S    +  G+ DCF+KI K
Sbjct  1   SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKS----KGRGILDCFKKIYK  56

Query  67  NEGFSRLYRGISAPILMEAPKRATKFAAND  96
            EG   LY+G+   +L  AP  A  F   +
Sbjct  57  EEGIRGLYKGLLPNLLRVAPAAAIYFGTYE  86


 Score = 85.4 bits (212),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query  212  NDLIAGTIGGIAGTVLNTPMDVVKSRIQNSPKVAGQVPKYNWAWPAVGTVMKEEGFGALY  271
              L+AG I G     +  P+DVVK+R+Q          K          + KEEG   LY
Sbjct  7    ASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKS--KGRGILDCFKKIYKEEGIRGLY  64

Query  272  KGFIPKVLRLGPGGGILLVVFTGVMDFFRK  301
            KG +P +LR+ P   I    +  +     K
Sbjct  65   KGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 74.2 bits (183),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 28/76 (37%), Positives = 35/76 (46%), Gaps = 2/76 (3%)

Query  117  VLTGATAGATEAFVVVPFELVKIRLQ--DRASAGKYNGMLDVVRKIIATEGPLAMYNGLE  174
            +L G  AGA    V  P ++VK RLQ    +   K  G+LD  +KI   EG   +Y GL 
Sbjct  9    LLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLL  68

Query  175  STLWRHILWNGGYFGC  190
              L R       YFG 
Sbjct  69   PNLLRVAPAAAIYFGT  84



Lambda      K        H        a         alpha
   0.321    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00007240

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00001586

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00001587

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00001594

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400548 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodie...  390     3e-131
CDD:462821 pfam09511, RNA_lig_T4_1, RNA ligase. Members of this f...  383     2e-129
CDD:400549 pfam08303, tRNA_lig_kinase, tRNA ligase kinase domain....  212     6e-65 


>CDD:400548 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodiesterase 
domain.  This domain is found in fungal tRNA ligases and has 
cyclic phosphodiesterase activity. tRNA ligases are enzymes 
required for the splicing of precursor tRNA molecules containing 
introns.
Length=253

 Score = 390 bits (1003),  Expect = 3e-131, Method: Composition-based stats.
 Identities = 134/279 (48%), Positives = 168/279 (60%), Gaps = 27/279 (10%)

Query  550  SSRENLETVVNALHSFYPDLLRRVPTSQELDDAVTWAMTEYHVQLDLSYSYGSSKPRQNL  609
            SSRENLETVVN LH  YP L+  +P+++ELD+A+  A+ +Y   +         K ++N 
Sbjct  1    SSRENLETVVNELHKKYPKLVPEMPSAEELDEAIDAALNDYKPDIKHDIGGRGKKKKKN-  59

Query  610  NKNKGQNDGASTAAHAQPQEPTPSPEALAQKIEYFCISIPTAEVTTLLHSLFP-PSTPPE  668
                            Q  +   SP    +K EYF +S+PTAEV ++L SLF  PS  PE
Sbjct  60   ----------------QNNQQQQSPRPKKKKPEYFSVSLPTAEVNSILDSLFKDPSASPE  103

Query  669  KARLYHHLVNSRRVQPTFHVTLIHRASKTERVDIWDRYANQYIAKMKEQSQAQAHTASPV  728
             +R Y  L  SRRVQP FHVTLIHRASK E  ++W RY   Y   + +        +   
Sbjct  104  TSRFYKQLKQSRRVQPEFHVTLIHRASKKEHPELWQRYTKLYKEALAKAPS----KSPTS  159

Query  729  LTPTLAPARVRLERLIWDDRIMAFVARIMPPGDREQPDWPCANPIPHVTVGTASAEVKPK  788
              PTL    VRLERL+WDDRIMA V R++PP      DW CAN +PH+TVGT S  VKPK
Sbjct  160  AEPTLGSCDVRLERLVWDDRIMAIVVRLVPP-----EDWECANKVPHITVGTLSPGVKPK  214

Query  789  ESNDLLRRWLEVGSGGDTGIWEAEIPGVKVVQGSVGMVM  827
            ESNDLL+RWLE GSGGDTGI E EIPG  V++G+V  V+
Sbjct  215  ESNDLLKRWLEEGSGGDTGIGELEIPGKPVLEGTVRGVL  253


>CDD:462821 pfam09511, RNA_lig_T4_1, RNA ligase.  Members of this family 
include T4 phage proteins with ATP-dependent RNA ligase activity. 
Host defense to phage may include cleavage and inactivation 
of specific tRNA molecules; members of this family act 
to reverse this RNA damage. The enzyme is adenylated, transiently, 
on a Lys residue in a motif KXDGSL. This family also 
includes fungal tRNA ligases that have adenylyltransferase 
activity. tRNA ligases are enzymes required for the splicing 
of precursor tRNA molecules containing introns.i.
Length=221

 Score = 383 bits (987),  Expect = 2e-129, Method: Composition-based stats.
 Identities = 143/233 (61%), Positives = 177/233 (76%), Gaps = 12/233 (5%)

Query  66   YARGLFTSKRKDGTPEIVVRGYDKFFNVDEVPTTKWQNIETNTRGPYELSVKENGCIIFI  125
             ARGLFT   +D    IVVRGYDKFFN++EVP TKW+ IE NT+GPYEL+ KENGCIIFI
Sbjct  1    EARGLFT--DEDTEHRIVVRGYDKFFNINEVPETKWEEIELNTKGPYELTEKENGCIIFI  58

Query  126  SGLEDGSLLVCSKHSTGVRQDTNLSHAQAGEKWVERHVASTGKSVKDLARELRRLNLTAV  185
            SGLEDG+L+V SKHSTG   D+N SHA+AGE+W+E+ +A  GK+ ++LA+ELR  N+TAV
Sbjct  59   SGLEDGTLVVTSKHSTG--PDSNRSHAEAGERWLEKQLAKEGKTYEELAKELRERNVTAV  116

Query  186  GELCDDSFEEHVLAYDPAAAGIYLHGLNFNVPQFATLPSSEVHNFADTWGFKKAKYLVYD  245
             ELCDDSFEEH++AY P  AG+YLHG+N+N P+F T P  EV  FA  WGFKK +++  D
Sbjct  117  FELCDDSFEEHIVAYYPEKAGLYLHGINYNTPEFVTYPMEEVQKFAKEWGFKKTEFVTLD  176

Query  246  DIHSVKKFLDHCAETGTWDGRETEGFVIRCQLGEGGGPYRDWFFKYKFEEPYL  298
            DI  VKKFL+  AETG+++GRE EGFVIRC+ G          FKYKF+EPY 
Sbjct  177  DIEEVKKFLEEVAETGSYNGREIEGFVIRCKSG--------DMFKYKFKEPYY  221


>CDD:400549 pfam08303, tRNA_lig_kinase, tRNA ligase kinase domain.  This 
domain is found in fungal tRNA ligases and has kinase activity. 
tRNA ligases are enzymes required for the splicing of precursor 
tRNA molecules containing introns. This family contains 
a P-loop motif.
Length=168

 Score = 212 bits (542),  Expect = 6e-65, Method: Composition-based stats.
 Identities = 81/173 (47%), Positives = 106/173 (61%), Gaps = 15/173 (9%)

Query  386  ILAPIASLGCGKTTLALALTKLFG-WGHVQNDNIPKQKNKPKRFAFEIANLLADK--PVV  442
            +L PIA++GCGKTT++L L  LF  WGHVQNDNI        +       LLA     VV
Sbjct  1    LLVPIATIGCGKTTVSLTLNNLFPEWGHVQNDNI--TGKDKSKLMKAALELLAKDGSSVV  58

Query  443  IADRNNHQRREREQLMEDI-------LPGIPGARFVALHYVHEPKDVLLPSIREVTRKRV  495
            IADRNNHQ RER+QL   I       LP     + +AL +V E     L  +RE+TR RV
Sbjct  59   IADRNNHQSRERKQLFTWIDQLKDNYLPYDTNLKVIALSFVDEDD---LEEVREITRDRV  115

Query  496  LERGDNHQTIRAGTKNSDEIVGIMEGFLKRFEGINREREPDSGFDHVIDLDVA  548
            L+RGDNHQ+I+  +    +++GIM GF+KRF+ +N  + PD+ FD VI+LDV 
Sbjct  116  LKRGDNHQSIKVESMGEKKVMGIMNGFIKRFQPVNPAKSPDNMFDLVIELDVL  168



Lambda      K        H        a         alpha
   0.318    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1060844846


Query= TCONS_00007241

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400548 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodie...  390     3e-131
CDD:462821 pfam09511, RNA_lig_T4_1, RNA ligase. Members of this f...  383     2e-129
CDD:400549 pfam08303, tRNA_lig_kinase, tRNA ligase kinase domain....  212     6e-65 


>CDD:400548 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodiesterase 
domain.  This domain is found in fungal tRNA ligases and has 
cyclic phosphodiesterase activity. tRNA ligases are enzymes 
required for the splicing of precursor tRNA molecules containing 
introns.
Length=253

 Score = 390 bits (1003),  Expect = 3e-131, Method: Composition-based stats.
 Identities = 134/279 (48%), Positives = 168/279 (60%), Gaps = 27/279 (10%)

Query  550  SSRENLETVVNALHSFYPDLLRRVPTSQELDDAVTWAMTEYHVQLDLSYSYGSSKPRQNL  609
            SSRENLETVVN LH  YP L+  +P+++ELD+A+  A+ +Y   +         K ++N 
Sbjct  1    SSRENLETVVNELHKKYPKLVPEMPSAEELDEAIDAALNDYKPDIKHDIGGRGKKKKKN-  59

Query  610  NKNKGQNDGASTAAHAQPQEPTPSPEALAQKIEYFCISIPTAEVTTLLHSLFP-PSTPPE  668
                            Q  +   SP    +K EYF +S+PTAEV ++L SLF  PS  PE
Sbjct  60   ----------------QNNQQQQSPRPKKKKPEYFSVSLPTAEVNSILDSLFKDPSASPE  103

Query  669  KARLYHHLVNSRRVQPTFHVTLIHRASKTERVDIWDRYANQYIAKMKEQSQAQAHTASPV  728
             +R Y  L  SRRVQP FHVTLIHRASK E  ++W RY   Y   + +        +   
Sbjct  104  TSRFYKQLKQSRRVQPEFHVTLIHRASKKEHPELWQRYTKLYKEALAKAPS----KSPTS  159

Query  729  LTPTLAPARVRLERLIWDDRIMAFVARIMPPGDREQPDWPCANPIPHVTVGTASAEVKPK  788
              PTL    VRLERL+WDDRIMA V R++PP      DW CAN +PH+TVGT S  VKPK
Sbjct  160  AEPTLGSCDVRLERLVWDDRIMAIVVRLVPP-----EDWECANKVPHITVGTLSPGVKPK  214

Query  789  ESNDLLRRWLEVGSGGDTGIWEAEIPGVKVVQGSVGMVM  827
            ESNDLL+RWLE GSGGDTGI E EIPG  V++G+V  V+
Sbjct  215  ESNDLLKRWLEEGSGGDTGIGELEIPGKPVLEGTVRGVL  253


>CDD:462821 pfam09511, RNA_lig_T4_1, RNA ligase.  Members of this family 
include T4 phage proteins with ATP-dependent RNA ligase activity. 
Host defense to phage may include cleavage and inactivation 
of specific tRNA molecules; members of this family act 
to reverse this RNA damage. The enzyme is adenylated, transiently, 
on a Lys residue in a motif KXDGSL. This family also 
includes fungal tRNA ligases that have adenylyltransferase 
activity. tRNA ligases are enzymes required for the splicing 
of precursor tRNA molecules containing introns.i.
Length=221

 Score = 383 bits (987),  Expect = 2e-129, Method: Composition-based stats.
 Identities = 143/233 (61%), Positives = 177/233 (76%), Gaps = 12/233 (5%)

Query  66   YARGLFTSKRKDGTPEIVVRGYDKFFNVDEVPTTKWQNIETNTRGPYELSVKENGCIIFI  125
             ARGLFT   +D    IVVRGYDKFFN++EVP TKW+ IE NT+GPYEL+ KENGCIIFI
Sbjct  1    EARGLFT--DEDTEHRIVVRGYDKFFNINEVPETKWEEIELNTKGPYELTEKENGCIIFI  58

Query  126  SGLEDGSLLVCSKHSTGVRQDTNLSHAQAGEKWVERHVASTGKSVKDLARELRRLNLTAV  185
            SGLEDG+L+V SKHSTG   D+N SHA+AGE+W+E+ +A  GK+ ++LA+ELR  N+TAV
Sbjct  59   SGLEDGTLVVTSKHSTG--PDSNRSHAEAGERWLEKQLAKEGKTYEELAKELRERNVTAV  116

Query  186  GELCDDSFEEHVLAYDPAAAGIYLHGLNFNVPQFATLPSSEVHNFADTWGFKKAKYLVYD  245
             ELCDDSFEEH++AY P  AG+YLHG+N+N P+F T P  EV  FA  WGFKK +++  D
Sbjct  117  FELCDDSFEEHIVAYYPEKAGLYLHGINYNTPEFVTYPMEEVQKFAKEWGFKKTEFVTLD  176

Query  246  DIHSVKKFLDHCAETGTWDGRETEGFVIRCQLGEGGGPYRDWFFKYKFEEPYL  298
            DI  VKKFL+  AETG+++GRE EGFVIRC+ G          FKYKF+EPY 
Sbjct  177  DIEEVKKFLEEVAETGSYNGREIEGFVIRCKSG--------DMFKYKFKEPYY  221


>CDD:400549 pfam08303, tRNA_lig_kinase, tRNA ligase kinase domain.  This 
domain is found in fungal tRNA ligases and has kinase activity. 
tRNA ligases are enzymes required for the splicing of precursor 
tRNA molecules containing introns. This family contains 
a P-loop motif.
Length=168

 Score = 212 bits (542),  Expect = 6e-65, Method: Composition-based stats.
 Identities = 81/173 (47%), Positives = 106/173 (61%), Gaps = 15/173 (9%)

Query  386  ILAPIASLGCGKTTLALALTKLFG-WGHVQNDNIPKQKNKPKRFAFEIANLLADK--PVV  442
            +L PIA++GCGKTT++L L  LF  WGHVQNDNI        +       LLA     VV
Sbjct  1    LLVPIATIGCGKTTVSLTLNNLFPEWGHVQNDNI--TGKDKSKLMKAALELLAKDGSSVV  58

Query  443  IADRNNHQRREREQLMEDI-------LPGIPGARFVALHYVHEPKDVLLPSIREVTRKRV  495
            IADRNNHQ RER+QL   I       LP     + +AL +V E     L  +RE+TR RV
Sbjct  59   IADRNNHQSRERKQLFTWIDQLKDNYLPYDTNLKVIALSFVDEDD---LEEVREITRDRV  115

Query  496  LERGDNHQTIRAGTKNSDEIVGIMEGFLKRFEGINREREPDSGFDHVIDLDVA  548
            L+RGDNHQ+I+  +    +++GIM GF+KRF+ +N  + PD+ FD VI+LDV 
Sbjct  116  LKRGDNHQSIKVESMGEKKVMGIMNGFIKRFQPVNPAKSPDNMFDLVIELDVL  168



Lambda      K        H        a         alpha
   0.318    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1060844846


Query= TCONS_00001589

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00007242

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400548 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodie...  390     3e-131
CDD:462821 pfam09511, RNA_lig_T4_1, RNA ligase. Members of this f...  383     2e-129
CDD:400549 pfam08303, tRNA_lig_kinase, tRNA ligase kinase domain....  212     6e-65 


>CDD:400548 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodiesterase 
domain.  This domain is found in fungal tRNA ligases and has 
cyclic phosphodiesterase activity. tRNA ligases are enzymes 
required for the splicing of precursor tRNA molecules containing 
introns.
Length=253

 Score = 390 bits (1003),  Expect = 3e-131, Method: Composition-based stats.
 Identities = 134/279 (48%), Positives = 168/279 (60%), Gaps = 27/279 (10%)

Query  550  SSRENLETVVNALHSFYPDLLRRVPTSQELDDAVTWAMTEYHVQLDLSYSYGSSKPRQNL  609
            SSRENLETVVN LH  YP L+  +P+++ELD+A+  A+ +Y   +         K ++N 
Sbjct  1    SSRENLETVVNELHKKYPKLVPEMPSAEELDEAIDAALNDYKPDIKHDIGGRGKKKKKN-  59

Query  610  NKNKGQNDGASTAAHAQPQEPTPSPEALAQKIEYFCISIPTAEVTTLLHSLFP-PSTPPE  668
                            Q  +   SP    +K EYF +S+PTAEV ++L SLF  PS  PE
Sbjct  60   ----------------QNNQQQQSPRPKKKKPEYFSVSLPTAEVNSILDSLFKDPSASPE  103

Query  669  KARLYHHLVNSRRVQPTFHVTLIHRASKTERVDIWDRYANQYIAKMKEQSQAQAHTASPV  728
             +R Y  L  SRRVQP FHVTLIHRASK E  ++W RY   Y   + +        +   
Sbjct  104  TSRFYKQLKQSRRVQPEFHVTLIHRASKKEHPELWQRYTKLYKEALAKAPS----KSPTS  159

Query  729  LTPTLAPARVRLERLIWDDRIMAFVARIMPPGDREQPDWPCANPIPHVTVGTASAEVKPK  788
              PTL    VRLERL+WDDRIMA V R++PP      DW CAN +PH+TVGT S  VKPK
Sbjct  160  AEPTLGSCDVRLERLVWDDRIMAIVVRLVPP-----EDWECANKVPHITVGTLSPGVKPK  214

Query  789  ESNDLLRRWLEVGSGGDTGIWEAEIPGVKVVQGSVGMVM  827
            ESNDLL+RWLE GSGGDTGI E EIPG  V++G+V  V+
Sbjct  215  ESNDLLKRWLEEGSGGDTGIGELEIPGKPVLEGTVRGVL  253


>CDD:462821 pfam09511, RNA_lig_T4_1, RNA ligase.  Members of this family 
include T4 phage proteins with ATP-dependent RNA ligase activity. 
Host defense to phage may include cleavage and inactivation 
of specific tRNA molecules; members of this family act 
to reverse this RNA damage. The enzyme is adenylated, transiently, 
on a Lys residue in a motif KXDGSL. This family also 
includes fungal tRNA ligases that have adenylyltransferase 
activity. tRNA ligases are enzymes required for the splicing 
of precursor tRNA molecules containing introns.i.
Length=221

 Score = 383 bits (987),  Expect = 2e-129, Method: Composition-based stats.
 Identities = 143/233 (61%), Positives = 177/233 (76%), Gaps = 12/233 (5%)

Query  66   YARGLFTSKRKDGTPEIVVRGYDKFFNVDEVPTTKWQNIETNTRGPYELSVKENGCIIFI  125
             ARGLFT   +D    IVVRGYDKFFN++EVP TKW+ IE NT+GPYEL+ KENGCIIFI
Sbjct  1    EARGLFT--DEDTEHRIVVRGYDKFFNINEVPETKWEEIELNTKGPYELTEKENGCIIFI  58

Query  126  SGLEDGSLLVCSKHSTGVRQDTNLSHAQAGEKWVERHVASTGKSVKDLARELRRLNLTAV  185
            SGLEDG+L+V SKHSTG   D+N SHA+AGE+W+E+ +A  GK+ ++LA+ELR  N+TAV
Sbjct  59   SGLEDGTLVVTSKHSTG--PDSNRSHAEAGERWLEKQLAKEGKTYEELAKELRERNVTAV  116

Query  186  GELCDDSFEEHVLAYDPAAAGIYLHGLNFNVPQFATLPSSEVHNFADTWGFKKAKYLVYD  245
             ELCDDSFEEH++AY P  AG+YLHG+N+N P+F T P  EV  FA  WGFKK +++  D
Sbjct  117  FELCDDSFEEHIVAYYPEKAGLYLHGINYNTPEFVTYPMEEVQKFAKEWGFKKTEFVTLD  176

Query  246  DIHSVKKFLDHCAETGTWDGRETEGFVIRCQLGEGGGPYRDWFFKYKFEEPYL  298
            DI  VKKFL+  AETG+++GRE EGFVIRC+ G          FKYKF+EPY 
Sbjct  177  DIEEVKKFLEEVAETGSYNGREIEGFVIRCKSG--------DMFKYKFKEPYY  221


>CDD:400549 pfam08303, tRNA_lig_kinase, tRNA ligase kinase domain.  This 
domain is found in fungal tRNA ligases and has kinase activity. 
tRNA ligases are enzymes required for the splicing of precursor 
tRNA molecules containing introns. This family contains 
a P-loop motif.
Length=168

 Score = 212 bits (542),  Expect = 6e-65, Method: Composition-based stats.
 Identities = 81/173 (47%), Positives = 106/173 (61%), Gaps = 15/173 (9%)

Query  386  ILAPIASLGCGKTTLALALTKLFG-WGHVQNDNIPKQKNKPKRFAFEIANLLADK--PVV  442
            +L PIA++GCGKTT++L L  LF  WGHVQNDNI        +       LLA     VV
Sbjct  1    LLVPIATIGCGKTTVSLTLNNLFPEWGHVQNDNI--TGKDKSKLMKAALELLAKDGSSVV  58

Query  443  IADRNNHQRREREQLMEDI-------LPGIPGARFVALHYVHEPKDVLLPSIREVTRKRV  495
            IADRNNHQ RER+QL   I       LP     + +AL +V E     L  +RE+TR RV
Sbjct  59   IADRNNHQSRERKQLFTWIDQLKDNYLPYDTNLKVIALSFVDEDD---LEEVREITRDRV  115

Query  496  LERGDNHQTIRAGTKNSDEIVGIMEGFLKRFEGINREREPDSGFDHVIDLDVA  548
            L+RGDNHQ+I+  +    +++GIM GF+KRF+ +N  + PD+ FD VI+LDV 
Sbjct  116  LKRGDNHQSIKVESMGEKKVMGIMNGFIKRFQPVNPAKSPDNMFDLVIELDVL  168



Lambda      K        H        a         alpha
   0.318    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1060844846


Query= TCONS_00007243

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400548 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodie...  390     3e-131
CDD:462821 pfam09511, RNA_lig_T4_1, RNA ligase. Members of this f...  383     2e-129
CDD:400549 pfam08303, tRNA_lig_kinase, tRNA ligase kinase domain....  212     6e-65 


>CDD:400548 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodiesterase 
domain.  This domain is found in fungal tRNA ligases and has 
cyclic phosphodiesterase activity. tRNA ligases are enzymes 
required for the splicing of precursor tRNA molecules containing 
introns.
Length=253

 Score = 390 bits (1003),  Expect = 3e-131, Method: Composition-based stats.
 Identities = 134/279 (48%), Positives = 168/279 (60%), Gaps = 27/279 (10%)

Query  550  SSRENLETVVNALHSFYPDLLRRVPTSQELDDAVTWAMTEYHVQLDLSYSYGSSKPRQNL  609
            SSRENLETVVN LH  YP L+  +P+++ELD+A+  A+ +Y   +         K ++N 
Sbjct  1    SSRENLETVVNELHKKYPKLVPEMPSAEELDEAIDAALNDYKPDIKHDIGGRGKKKKKN-  59

Query  610  NKNKGQNDGASTAAHAQPQEPTPSPEALAQKIEYFCISIPTAEVTTLLHSLFP-PSTPPE  668
                            Q  +   SP    +K EYF +S+PTAEV ++L SLF  PS  PE
Sbjct  60   ----------------QNNQQQQSPRPKKKKPEYFSVSLPTAEVNSILDSLFKDPSASPE  103

Query  669  KARLYHHLVNSRRVQPTFHVTLIHRASKTERVDIWDRYANQYIAKMKEQSQAQAHTASPV  728
             +R Y  L  SRRVQP FHVTLIHRASK E  ++W RY   Y   + +        +   
Sbjct  104  TSRFYKQLKQSRRVQPEFHVTLIHRASKKEHPELWQRYTKLYKEALAKAPS----KSPTS  159

Query  729  LTPTLAPARVRLERLIWDDRIMAFVARIMPPGDREQPDWPCANPIPHVTVGTASAEVKPK  788
              PTL    VRLERL+WDDRIMA V R++PP      DW CAN +PH+TVGT S  VKPK
Sbjct  160  AEPTLGSCDVRLERLVWDDRIMAIVVRLVPP-----EDWECANKVPHITVGTLSPGVKPK  214

Query  789  ESNDLLRRWLEVGSGGDTGIWEAEIPGVKVVQGSVGMVM  827
            ESNDLL+RWLE GSGGDTGI E EIPG  V++G+V  V+
Sbjct  215  ESNDLLKRWLEEGSGGDTGIGELEIPGKPVLEGTVRGVL  253


>CDD:462821 pfam09511, RNA_lig_T4_1, RNA ligase.  Members of this family 
include T4 phage proteins with ATP-dependent RNA ligase activity. 
Host defense to phage may include cleavage and inactivation 
of specific tRNA molecules; members of this family act 
to reverse this RNA damage. The enzyme is adenylated, transiently, 
on a Lys residue in a motif KXDGSL. This family also 
includes fungal tRNA ligases that have adenylyltransferase 
activity. tRNA ligases are enzymes required for the splicing 
of precursor tRNA molecules containing introns.i.
Length=221

 Score = 383 bits (987),  Expect = 2e-129, Method: Composition-based stats.
 Identities = 143/233 (61%), Positives = 177/233 (76%), Gaps = 12/233 (5%)

Query  66   YARGLFTSKRKDGTPEIVVRGYDKFFNVDEVPTTKWQNIETNTRGPYELSVKENGCIIFI  125
             ARGLFT   +D    IVVRGYDKFFN++EVP TKW+ IE NT+GPYEL+ KENGCIIFI
Sbjct  1    EARGLFT--DEDTEHRIVVRGYDKFFNINEVPETKWEEIELNTKGPYELTEKENGCIIFI  58

Query  126  SGLEDGSLLVCSKHSTGVRQDTNLSHAQAGEKWVERHVASTGKSVKDLARELRRLNLTAV  185
            SGLEDG+L+V SKHSTG   D+N SHA+AGE+W+E+ +A  GK+ ++LA+ELR  N+TAV
Sbjct  59   SGLEDGTLVVTSKHSTG--PDSNRSHAEAGERWLEKQLAKEGKTYEELAKELRERNVTAV  116

Query  186  GELCDDSFEEHVLAYDPAAAGIYLHGLNFNVPQFATLPSSEVHNFADTWGFKKAKYLVYD  245
             ELCDDSFEEH++AY P  AG+YLHG+N+N P+F T P  EV  FA  WGFKK +++  D
Sbjct  117  FELCDDSFEEHIVAYYPEKAGLYLHGINYNTPEFVTYPMEEVQKFAKEWGFKKTEFVTLD  176

Query  246  DIHSVKKFLDHCAETGTWDGRETEGFVIRCQLGEGGGPYRDWFFKYKFEEPYL  298
            DI  VKKFL+  AETG+++GRE EGFVIRC+ G          FKYKF+EPY 
Sbjct  177  DIEEVKKFLEEVAETGSYNGREIEGFVIRCKSG--------DMFKYKFKEPYY  221


>CDD:400549 pfam08303, tRNA_lig_kinase, tRNA ligase kinase domain.  This 
domain is found in fungal tRNA ligases and has kinase activity. 
tRNA ligases are enzymes required for the splicing of precursor 
tRNA molecules containing introns. This family contains 
a P-loop motif.
Length=168

 Score = 212 bits (542),  Expect = 6e-65, Method: Composition-based stats.
 Identities = 81/173 (47%), Positives = 106/173 (61%), Gaps = 15/173 (9%)

Query  386  ILAPIASLGCGKTTLALALTKLFG-WGHVQNDNIPKQKNKPKRFAFEIANLLADK--PVV  442
            +L PIA++GCGKTT++L L  LF  WGHVQNDNI        +       LLA     VV
Sbjct  1    LLVPIATIGCGKTTVSLTLNNLFPEWGHVQNDNI--TGKDKSKLMKAALELLAKDGSSVV  58

Query  443  IADRNNHQRREREQLMEDI-------LPGIPGARFVALHYVHEPKDVLLPSIREVTRKRV  495
            IADRNNHQ RER+QL   I       LP     + +AL +V E     L  +RE+TR RV
Sbjct  59   IADRNNHQSRERKQLFTWIDQLKDNYLPYDTNLKVIALSFVDEDD---LEEVREITRDRV  115

Query  496  LERGDNHQTIRAGTKNSDEIVGIMEGFLKRFEGINREREPDSGFDHVIDLDVA  548
            L+RGDNHQ+I+  +    +++GIM GF+KRF+ +N  + PD+ FD VI+LDV 
Sbjct  116  LKRGDNHQSIKVESMGEKKVMGIMNGFIKRFQPVNPAKSPDNMFDLVIELDVL  168



Lambda      K        H        a         alpha
   0.318    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1060844846


Query= TCONS_00001591

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400548 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodie...  390     3e-131
CDD:462821 pfam09511, RNA_lig_T4_1, RNA ligase. Members of this f...  383     2e-129
CDD:400549 pfam08303, tRNA_lig_kinase, tRNA ligase kinase domain....  212     6e-65 


>CDD:400548 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodiesterase 
domain.  This domain is found in fungal tRNA ligases and has 
cyclic phosphodiesterase activity. tRNA ligases are enzymes 
required for the splicing of precursor tRNA molecules containing 
introns.
Length=253

 Score = 390 bits (1003),  Expect = 3e-131, Method: Composition-based stats.
 Identities = 134/279 (48%), Positives = 168/279 (60%), Gaps = 27/279 (10%)

Query  550  SSRENLETVVNALHSFYPDLLRRVPTSQELDDAVTWAMTEYHVQLDLSYSYGSSKPRQNL  609
            SSRENLETVVN LH  YP L+  +P+++ELD+A+  A+ +Y   +         K ++N 
Sbjct  1    SSRENLETVVNELHKKYPKLVPEMPSAEELDEAIDAALNDYKPDIKHDIGGRGKKKKKN-  59

Query  610  NKNKGQNDGASTAAHAQPQEPTPSPEALAQKIEYFCISIPTAEVTTLLHSLFP-PSTPPE  668
                            Q  +   SP    +K EYF +S+PTAEV ++L SLF  PS  PE
Sbjct  60   ----------------QNNQQQQSPRPKKKKPEYFSVSLPTAEVNSILDSLFKDPSASPE  103

Query  669  KARLYHHLVNSRRVQPTFHVTLIHRASKTERVDIWDRYANQYIAKMKEQSQAQAHTASPV  728
             +R Y  L  SRRVQP FHVTLIHRASK E  ++W RY   Y   + +        +   
Sbjct  104  TSRFYKQLKQSRRVQPEFHVTLIHRASKKEHPELWQRYTKLYKEALAKAPS----KSPTS  159

Query  729  LTPTLAPARVRLERLIWDDRIMAFVARIMPPGDREQPDWPCANPIPHVTVGTASAEVKPK  788
              PTL    VRLERL+WDDRIMA V R++PP      DW CAN +PH+TVGT S  VKPK
Sbjct  160  AEPTLGSCDVRLERLVWDDRIMAIVVRLVPP-----EDWECANKVPHITVGTLSPGVKPK  214

Query  789  ESNDLLRRWLEVGSGGDTGIWEAEIPGVKVVQGSVGMVM  827
            ESNDLL+RWLE GSGGDTGI E EIPG  V++G+V  V+
Sbjct  215  ESNDLLKRWLEEGSGGDTGIGELEIPGKPVLEGTVRGVL  253


>CDD:462821 pfam09511, RNA_lig_T4_1, RNA ligase.  Members of this family 
include T4 phage proteins with ATP-dependent RNA ligase activity. 
Host defense to phage may include cleavage and inactivation 
of specific tRNA molecules; members of this family act 
to reverse this RNA damage. The enzyme is adenylated, transiently, 
on a Lys residue in a motif KXDGSL. This family also 
includes fungal tRNA ligases that have adenylyltransferase 
activity. tRNA ligases are enzymes required for the splicing 
of precursor tRNA molecules containing introns.i.
Length=221

 Score = 383 bits (987),  Expect = 2e-129, Method: Composition-based stats.
 Identities = 143/233 (61%), Positives = 177/233 (76%), Gaps = 12/233 (5%)

Query  66   YARGLFTSKRKDGTPEIVVRGYDKFFNVDEVPTTKWQNIETNTRGPYELSVKENGCIIFI  125
             ARGLFT   +D    IVVRGYDKFFN++EVP TKW+ IE NT+GPYEL+ KENGCIIFI
Sbjct  1    EARGLFT--DEDTEHRIVVRGYDKFFNINEVPETKWEEIELNTKGPYELTEKENGCIIFI  58

Query  126  SGLEDGSLLVCSKHSTGVRQDTNLSHAQAGEKWVERHVASTGKSVKDLARELRRLNLTAV  185
            SGLEDG+L+V SKHSTG   D+N SHA+AGE+W+E+ +A  GK+ ++LA+ELR  N+TAV
Sbjct  59   SGLEDGTLVVTSKHSTG--PDSNRSHAEAGERWLEKQLAKEGKTYEELAKELRERNVTAV  116

Query  186  GELCDDSFEEHVLAYDPAAAGIYLHGLNFNVPQFATLPSSEVHNFADTWGFKKAKYLVYD  245
             ELCDDSFEEH++AY P  AG+YLHG+N+N P+F T P  EV  FA  WGFKK +++  D
Sbjct  117  FELCDDSFEEHIVAYYPEKAGLYLHGINYNTPEFVTYPMEEVQKFAKEWGFKKTEFVTLD  176

Query  246  DIHSVKKFLDHCAETGTWDGRETEGFVIRCQLGEGGGPYRDWFFKYKFEEPYL  298
            DI  VKKFL+  AETG+++GRE EGFVIRC+ G          FKYKF+EPY 
Sbjct  177  DIEEVKKFLEEVAETGSYNGREIEGFVIRCKSG--------DMFKYKFKEPYY  221


>CDD:400549 pfam08303, tRNA_lig_kinase, tRNA ligase kinase domain.  This 
domain is found in fungal tRNA ligases and has kinase activity. 
tRNA ligases are enzymes required for the splicing of precursor 
tRNA molecules containing introns. This family contains 
a P-loop motif.
Length=168

 Score = 212 bits (542),  Expect = 6e-65, Method: Composition-based stats.
 Identities = 81/173 (47%), Positives = 106/173 (61%), Gaps = 15/173 (9%)

Query  386  ILAPIASLGCGKTTLALALTKLFG-WGHVQNDNIPKQKNKPKRFAFEIANLLADK--PVV  442
            +L PIA++GCGKTT++L L  LF  WGHVQNDNI        +       LLA     VV
Sbjct  1    LLVPIATIGCGKTTVSLTLNNLFPEWGHVQNDNI--TGKDKSKLMKAALELLAKDGSSVV  58

Query  443  IADRNNHQRREREQLMEDI-------LPGIPGARFVALHYVHEPKDVLLPSIREVTRKRV  495
            IADRNNHQ RER+QL   I       LP     + +AL +V E     L  +RE+TR RV
Sbjct  59   IADRNNHQSRERKQLFTWIDQLKDNYLPYDTNLKVIALSFVDEDD---LEEVREITRDRV  115

Query  496  LERGDNHQTIRAGTKNSDEIVGIMEGFLKRFEGINREREPDSGFDHVIDLDVA  548
            L+RGDNHQ+I+  +    +++GIM GF+KRF+ +N  + PD+ FD VI+LDV 
Sbjct  116  LKRGDNHQSIKVESMGEKKVMGIMNGFIKRFQPVNPAKSPDNMFDLVIELDVL  168



Lambda      K        H        a         alpha
   0.318    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1060844846


Query= TCONS_00001592

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461210 pfam04178, Got1, Got1/Sft2-like family. Traffic throug...  98.3    1e-27


>CDD:461210 pfam04178, Got1, Got1/Sft2-like family.  Traffic through the 
yeast Golgi complex depends on a member of the syntaxin family 
of SNARE proteins, Sed5, present in early Golgi cisternae. 
Got1 is thought to facilitate Sed5-dependent fusion events. 
This is a family of sequences derived from eukaryotic proteins. 
They are similar to a region of a SNARE-like protein required 
for traffic through the Golgi complex, SFT2 protein. 
This is a conserved protein with four putative transmembrane 
helices, thought to be involved in vesicular transport in 
later Golgi compartments.
Length=110

 Score = 98.3 bits (246),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 44/97 (45%), Positives = 63/97 (65%), Gaps = 2/97 (2%)

Query  83   MLIFIACNLGAAVCFMICFFLFPVLSLKPRKFAILWSVGSLLFLLSWAVLMGPLVYAKHL  142
            ++ F  C L   +CF + FFLF  +  KPRKFA+L+++G++LFL S   L+GP    KH+
Sbjct  1    LIGFGICLLLGVLCFFLSFFLF--VLAKPRKFALLYTLGNILFLGSTGFLIGPKKQLKHM  58

Query  143  VSGSRLPFTAAYFGSIAMTLYFAIGVSSLISSSLCAI  179
             S  RLPFT AY GS+ +TLYFA+ + S   + L +I
Sbjct  59   FSKERLPFTIAYLGSLLLTLYFALILKSYGLTLLFSI  95



Lambda      K        H        a         alpha
   0.326    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00001593

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461210 pfam04178, Got1, Got1/Sft2-like family. Traffic throug...  120     4e-36


>CDD:461210 pfam04178, Got1, Got1/Sft2-like family.  Traffic through the 
yeast Golgi complex depends on a member of the syntaxin family 
of SNARE proteins, Sed5, present in early Golgi cisternae. 
Got1 is thought to facilitate Sed5-dependent fusion events. 
This is a family of sequences derived from eukaryotic proteins. 
They are similar to a region of a SNARE-like protein required 
for traffic through the Golgi complex, SFT2 protein. 
This is a conserved protein with four putative transmembrane 
helices, thought to be involved in vesicular transport in 
later Golgi compartments.
Length=110

 Score = 120 bits (304),  Expect = 4e-36, Method: Composition-based stats.
 Identities = 53/107 (50%), Positives = 70/107 (65%), Gaps = 2/107 (2%)

Query  83   MLIFIACNLGAAVCFMICFFLFPVLSLKPRKFAILWSVGSLLFLLSWAVLMGPLVYAKHL  142
            ++ F  C L   +CF + FFLF  +  KPRKFA+L+++G++LFL S   L+GP    KH+
Sbjct  1    LIGFGICLLLGVLCFFLSFFLF--VLAKPRKFALLYTLGNILFLGSTGFLIGPKKQLKHM  58

Query  143  VSGSRLPFTAAYFGSIAMTLYFAIGLHSTLLTLISSIFQLAALAWYL  189
             S  RLPFT AY GS+ +TLYFA+ L S  LTL+ SI Q  AL WY 
Sbjct  59   FSKERLPFTIAYLGSLLLTLYFALILKSYGLTLLFSIIQFLALVWYF  105



Lambda      K        H        a         alpha
   0.327    0.138    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00001595

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400548 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodie...  390     3e-131
CDD:462821 pfam09511, RNA_lig_T4_1, RNA ligase. Members of this f...  383     2e-129
CDD:400549 pfam08303, tRNA_lig_kinase, tRNA ligase kinase domain....  212     6e-65 


>CDD:400548 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodiesterase 
domain.  This domain is found in fungal tRNA ligases and has 
cyclic phosphodiesterase activity. tRNA ligases are enzymes 
required for the splicing of precursor tRNA molecules containing 
introns.
Length=253

 Score = 390 bits (1003),  Expect = 3e-131, Method: Composition-based stats.
 Identities = 134/279 (48%), Positives = 168/279 (60%), Gaps = 27/279 (10%)

Query  550  SSRENLETVVNALHSFYPDLLRRVPTSQELDDAVTWAMTEYHVQLDLSYSYGSSKPRQNL  609
            SSRENLETVVN LH  YP L+  +P+++ELD+A+  A+ +Y   +         K ++N 
Sbjct  1    SSRENLETVVNELHKKYPKLVPEMPSAEELDEAIDAALNDYKPDIKHDIGGRGKKKKKN-  59

Query  610  NKNKGQNDGASTAAHAQPQEPTPSPEALAQKIEYFCISIPTAEVTTLLHSLFP-PSTPPE  668
                            Q  +   SP    +K EYF +S+PTAEV ++L SLF  PS  PE
Sbjct  60   ----------------QNNQQQQSPRPKKKKPEYFSVSLPTAEVNSILDSLFKDPSASPE  103

Query  669  KARLYHHLVNSRRVQPTFHVTLIHRASKTERVDIWDRYANQYIAKMKEQSQAQAHTASPV  728
             +R Y  L  SRRVQP FHVTLIHRASK E  ++W RY   Y   + +        +   
Sbjct  104  TSRFYKQLKQSRRVQPEFHVTLIHRASKKEHPELWQRYTKLYKEALAKAPS----KSPTS  159

Query  729  LTPTLAPARVRLERLIWDDRIMAFVARIMPPGDREQPDWPCANPIPHVTVGTASAEVKPK  788
              PTL    VRLERL+WDDRIMA V R++PP      DW CAN +PH+TVGT S  VKPK
Sbjct  160  AEPTLGSCDVRLERLVWDDRIMAIVVRLVPP-----EDWECANKVPHITVGTLSPGVKPK  214

Query  789  ESNDLLRRWLEVGSGGDTGIWEAEIPGVKVVQGSVGMVM  827
            ESNDLL+RWLE GSGGDTGI E EIPG  V++G+V  V+
Sbjct  215  ESNDLLKRWLEEGSGGDTGIGELEIPGKPVLEGTVRGVL  253


>CDD:462821 pfam09511, RNA_lig_T4_1, RNA ligase.  Members of this family 
include T4 phage proteins with ATP-dependent RNA ligase activity. 
Host defense to phage may include cleavage and inactivation 
of specific tRNA molecules; members of this family act 
to reverse this RNA damage. The enzyme is adenylated, transiently, 
on a Lys residue in a motif KXDGSL. This family also 
includes fungal tRNA ligases that have adenylyltransferase 
activity. tRNA ligases are enzymes required for the splicing 
of precursor tRNA molecules containing introns.i.
Length=221

 Score = 383 bits (987),  Expect = 2e-129, Method: Composition-based stats.
 Identities = 143/233 (61%), Positives = 177/233 (76%), Gaps = 12/233 (5%)

Query  66   YARGLFTSKRKDGTPEIVVRGYDKFFNVDEVPTTKWQNIETNTRGPYELSVKENGCIIFI  125
             ARGLFT   +D    IVVRGYDKFFN++EVP TKW+ IE NT+GPYEL+ KENGCIIFI
Sbjct  1    EARGLFT--DEDTEHRIVVRGYDKFFNINEVPETKWEEIELNTKGPYELTEKENGCIIFI  58

Query  126  SGLEDGSLLVCSKHSTGVRQDTNLSHAQAGEKWVERHVASTGKSVKDLARELRRLNLTAV  185
            SGLEDG+L+V SKHSTG   D+N SHA+AGE+W+E+ +A  GK+ ++LA+ELR  N+TAV
Sbjct  59   SGLEDGTLVVTSKHSTG--PDSNRSHAEAGERWLEKQLAKEGKTYEELAKELRERNVTAV  116

Query  186  GELCDDSFEEHVLAYDPAAAGIYLHGLNFNVPQFATLPSSEVHNFADTWGFKKAKYLVYD  245
             ELCDDSFEEH++AY P  AG+YLHG+N+N P+F T P  EV  FA  WGFKK +++  D
Sbjct  117  FELCDDSFEEHIVAYYPEKAGLYLHGINYNTPEFVTYPMEEVQKFAKEWGFKKTEFVTLD  176

Query  246  DIHSVKKFLDHCAETGTWDGRETEGFVIRCQLGEGGGPYRDWFFKYKFEEPYL  298
            DI  VKKFL+  AETG+++GRE EGFVIRC+ G          FKYKF+EPY 
Sbjct  177  DIEEVKKFLEEVAETGSYNGREIEGFVIRCKSG--------DMFKYKFKEPYY  221


>CDD:400549 pfam08303, tRNA_lig_kinase, tRNA ligase kinase domain.  This 
domain is found in fungal tRNA ligases and has kinase activity. 
tRNA ligases are enzymes required for the splicing of precursor 
tRNA molecules containing introns. This family contains 
a P-loop motif.
Length=168

 Score = 212 bits (542),  Expect = 6e-65, Method: Composition-based stats.
 Identities = 81/173 (47%), Positives = 106/173 (61%), Gaps = 15/173 (9%)

Query  386  ILAPIASLGCGKTTLALALTKLFG-WGHVQNDNIPKQKNKPKRFAFEIANLLADK--PVV  442
            +L PIA++GCGKTT++L L  LF  WGHVQNDNI        +       LLA     VV
Sbjct  1    LLVPIATIGCGKTTVSLTLNNLFPEWGHVQNDNI--TGKDKSKLMKAALELLAKDGSSVV  58

Query  443  IADRNNHQRREREQLMEDI-------LPGIPGARFVALHYVHEPKDVLLPSIREVTRKRV  495
            IADRNNHQ RER+QL   I       LP     + +AL +V E     L  +RE+TR RV
Sbjct  59   IADRNNHQSRERKQLFTWIDQLKDNYLPYDTNLKVIALSFVDEDD---LEEVREITRDRV  115

Query  496  LERGDNHQTIRAGTKNSDEIVGIMEGFLKRFEGINREREPDSGFDHVIDLDVA  548
            L+RGDNHQ+I+  +    +++GIM GF+KRF+ +N  + PD+ FD VI+LDV 
Sbjct  116  LKRGDNHQSIKVESMGEKKVMGIMNGFIKRFQPVNPAKSPDNMFDLVIELDVL  168



Lambda      K        H        a         alpha
   0.318    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1060844846


Query= TCONS_00007244

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400548 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodie...  390     3e-131
CDD:462821 pfam09511, RNA_lig_T4_1, RNA ligase. Members of this f...  383     2e-129
CDD:400549 pfam08303, tRNA_lig_kinase, tRNA ligase kinase domain....  212     6e-65 


>CDD:400548 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodiesterase 
domain.  This domain is found in fungal tRNA ligases and has 
cyclic phosphodiesterase activity. tRNA ligases are enzymes 
required for the splicing of precursor tRNA molecules containing 
introns.
Length=253

 Score = 390 bits (1003),  Expect = 3e-131, Method: Composition-based stats.
 Identities = 134/279 (48%), Positives = 168/279 (60%), Gaps = 27/279 (10%)

Query  550  SSRENLETVVNALHSFYPDLLRRVPTSQELDDAVTWAMTEYHVQLDLSYSYGSSKPRQNL  609
            SSRENLETVVN LH  YP L+  +P+++ELD+A+  A+ +Y   +         K ++N 
Sbjct  1    SSRENLETVVNELHKKYPKLVPEMPSAEELDEAIDAALNDYKPDIKHDIGGRGKKKKKN-  59

Query  610  NKNKGQNDGASTAAHAQPQEPTPSPEALAQKIEYFCISIPTAEVTTLLHSLFP-PSTPPE  668
                            Q  +   SP    +K EYF +S+PTAEV ++L SLF  PS  PE
Sbjct  60   ----------------QNNQQQQSPRPKKKKPEYFSVSLPTAEVNSILDSLFKDPSASPE  103

Query  669  KARLYHHLVNSRRVQPTFHVTLIHRASKTERVDIWDRYANQYIAKMKEQSQAQAHTASPV  728
             +R Y  L  SRRVQP FHVTLIHRASK E  ++W RY   Y   + +        +   
Sbjct  104  TSRFYKQLKQSRRVQPEFHVTLIHRASKKEHPELWQRYTKLYKEALAKAPS----KSPTS  159

Query  729  LTPTLAPARVRLERLIWDDRIMAFVARIMPPGDREQPDWPCANPIPHVTVGTASAEVKPK  788
              PTL    VRLERL+WDDRIMA V R++PP      DW CAN +PH+TVGT S  VKPK
Sbjct  160  AEPTLGSCDVRLERLVWDDRIMAIVVRLVPP-----EDWECANKVPHITVGTLSPGVKPK  214

Query  789  ESNDLLRRWLEVGSGGDTGIWEAEIPGVKVVQGSVGMVM  827
            ESNDLL+RWLE GSGGDTGI E EIPG  V++G+V  V+
Sbjct  215  ESNDLLKRWLEEGSGGDTGIGELEIPGKPVLEGTVRGVL  253


>CDD:462821 pfam09511, RNA_lig_T4_1, RNA ligase.  Members of this family 
include T4 phage proteins with ATP-dependent RNA ligase activity. 
Host defense to phage may include cleavage and inactivation 
of specific tRNA molecules; members of this family act 
to reverse this RNA damage. The enzyme is adenylated, transiently, 
on a Lys residue in a motif KXDGSL. This family also 
includes fungal tRNA ligases that have adenylyltransferase 
activity. tRNA ligases are enzymes required for the splicing 
of precursor tRNA molecules containing introns.i.
Length=221

 Score = 383 bits (987),  Expect = 2e-129, Method: Composition-based stats.
 Identities = 143/233 (61%), Positives = 177/233 (76%), Gaps = 12/233 (5%)

Query  66   YARGLFTSKRKDGTPEIVVRGYDKFFNVDEVPTTKWQNIETNTRGPYELSVKENGCIIFI  125
             ARGLFT   +D    IVVRGYDKFFN++EVP TKW+ IE NT+GPYEL+ KENGCIIFI
Sbjct  1    EARGLFT--DEDTEHRIVVRGYDKFFNINEVPETKWEEIELNTKGPYELTEKENGCIIFI  58

Query  126  SGLEDGSLLVCSKHSTGVRQDTNLSHAQAGEKWVERHVASTGKSVKDLARELRRLNLTAV  185
            SGLEDG+L+V SKHSTG   D+N SHA+AGE+W+E+ +A  GK+ ++LA+ELR  N+TAV
Sbjct  59   SGLEDGTLVVTSKHSTG--PDSNRSHAEAGERWLEKQLAKEGKTYEELAKELRERNVTAV  116

Query  186  GELCDDSFEEHVLAYDPAAAGIYLHGLNFNVPQFATLPSSEVHNFADTWGFKKAKYLVYD  245
             ELCDDSFEEH++AY P  AG+YLHG+N+N P+F T P  EV  FA  WGFKK +++  D
Sbjct  117  FELCDDSFEEHIVAYYPEKAGLYLHGINYNTPEFVTYPMEEVQKFAKEWGFKKTEFVTLD  176

Query  246  DIHSVKKFLDHCAETGTWDGRETEGFVIRCQLGEGGGPYRDWFFKYKFEEPYL  298
            DI  VKKFL+  AETG+++GRE EGFVIRC+ G          FKYKF+EPY 
Sbjct  177  DIEEVKKFLEEVAETGSYNGREIEGFVIRCKSG--------DMFKYKFKEPYY  221


>CDD:400549 pfam08303, tRNA_lig_kinase, tRNA ligase kinase domain.  This 
domain is found in fungal tRNA ligases and has kinase activity. 
tRNA ligases are enzymes required for the splicing of precursor 
tRNA molecules containing introns. This family contains 
a P-loop motif.
Length=168

 Score = 212 bits (542),  Expect = 6e-65, Method: Composition-based stats.
 Identities = 81/173 (47%), Positives = 106/173 (61%), Gaps = 15/173 (9%)

Query  386  ILAPIASLGCGKTTLALALTKLFG-WGHVQNDNIPKQKNKPKRFAFEIANLLADK--PVV  442
            +L PIA++GCGKTT++L L  LF  WGHVQNDNI        +       LLA     VV
Sbjct  1    LLVPIATIGCGKTTVSLTLNNLFPEWGHVQNDNI--TGKDKSKLMKAALELLAKDGSSVV  58

Query  443  IADRNNHQRREREQLMEDI-------LPGIPGARFVALHYVHEPKDVLLPSIREVTRKRV  495
            IADRNNHQ RER+QL   I       LP     + +AL +V E     L  +RE+TR RV
Sbjct  59   IADRNNHQSRERKQLFTWIDQLKDNYLPYDTNLKVIALSFVDEDD---LEEVREITRDRV  115

Query  496  LERGDNHQTIRAGTKNSDEIVGIMEGFLKRFEGINREREPDSGFDHVIDLDVA  548
            L+RGDNHQ+I+  +    +++GIM GF+KRF+ +N  + PD+ FD VI+LDV 
Sbjct  116  LKRGDNHQSIKVESMGEKKVMGIMNGFIKRFQPVNPAKSPDNMFDLVIELDVL  168



Lambda      K        H        a         alpha
   0.318    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1060844846


Query= TCONS_00001596

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400548 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodie...  390     3e-131
CDD:462821 pfam09511, RNA_lig_T4_1, RNA ligase. Members of this f...  383     2e-129
CDD:400549 pfam08303, tRNA_lig_kinase, tRNA ligase kinase domain....  212     6e-65 


>CDD:400548 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodiesterase 
domain.  This domain is found in fungal tRNA ligases and has 
cyclic phosphodiesterase activity. tRNA ligases are enzymes 
required for the splicing of precursor tRNA molecules containing 
introns.
Length=253

 Score = 390 bits (1003),  Expect = 3e-131, Method: Composition-based stats.
 Identities = 134/279 (48%), Positives = 168/279 (60%), Gaps = 27/279 (10%)

Query  550  SSRENLETVVNALHSFYPDLLRRVPTSQELDDAVTWAMTEYHVQLDLSYSYGSSKPRQNL  609
            SSRENLETVVN LH  YP L+  +P+++ELD+A+  A+ +Y   +         K ++N 
Sbjct  1    SSRENLETVVNELHKKYPKLVPEMPSAEELDEAIDAALNDYKPDIKHDIGGRGKKKKKN-  59

Query  610  NKNKGQNDGASTAAHAQPQEPTPSPEALAQKIEYFCISIPTAEVTTLLHSLFP-PSTPPE  668
                            Q  +   SP    +K EYF +S+PTAEV ++L SLF  PS  PE
Sbjct  60   ----------------QNNQQQQSPRPKKKKPEYFSVSLPTAEVNSILDSLFKDPSASPE  103

Query  669  KARLYHHLVNSRRVQPTFHVTLIHRASKTERVDIWDRYANQYIAKMKEQSQAQAHTASPV  728
             +R Y  L  SRRVQP FHVTLIHRASK E  ++W RY   Y   + +        +   
Sbjct  104  TSRFYKQLKQSRRVQPEFHVTLIHRASKKEHPELWQRYTKLYKEALAKAPS----KSPTS  159

Query  729  LTPTLAPARVRLERLIWDDRIMAFVARIMPPGDREQPDWPCANPIPHVTVGTASAEVKPK  788
              PTL    VRLERL+WDDRIMA V R++PP      DW CAN +PH+TVGT S  VKPK
Sbjct  160  AEPTLGSCDVRLERLVWDDRIMAIVVRLVPP-----EDWECANKVPHITVGTLSPGVKPK  214

Query  789  ESNDLLRRWLEVGSGGDTGIWEAEIPGVKVVQGSVGMVM  827
            ESNDLL+RWLE GSGGDTGI E EIPG  V++G+V  V+
Sbjct  215  ESNDLLKRWLEEGSGGDTGIGELEIPGKPVLEGTVRGVL  253


>CDD:462821 pfam09511, RNA_lig_T4_1, RNA ligase.  Members of this family 
include T4 phage proteins with ATP-dependent RNA ligase activity. 
Host defense to phage may include cleavage and inactivation 
of specific tRNA molecules; members of this family act 
to reverse this RNA damage. The enzyme is adenylated, transiently, 
on a Lys residue in a motif KXDGSL. This family also 
includes fungal tRNA ligases that have adenylyltransferase 
activity. tRNA ligases are enzymes required for the splicing 
of precursor tRNA molecules containing introns.i.
Length=221

 Score = 383 bits (987),  Expect = 2e-129, Method: Composition-based stats.
 Identities = 143/233 (61%), Positives = 177/233 (76%), Gaps = 12/233 (5%)

Query  66   YARGLFTSKRKDGTPEIVVRGYDKFFNVDEVPTTKWQNIETNTRGPYELSVKENGCIIFI  125
             ARGLFT   +D    IVVRGYDKFFN++EVP TKW+ IE NT+GPYEL+ KENGCIIFI
Sbjct  1    EARGLFT--DEDTEHRIVVRGYDKFFNINEVPETKWEEIELNTKGPYELTEKENGCIIFI  58

Query  126  SGLEDGSLLVCSKHSTGVRQDTNLSHAQAGEKWVERHVASTGKSVKDLARELRRLNLTAV  185
            SGLEDG+L+V SKHSTG   D+N SHA+AGE+W+E+ +A  GK+ ++LA+ELR  N+TAV
Sbjct  59   SGLEDGTLVVTSKHSTG--PDSNRSHAEAGERWLEKQLAKEGKTYEELAKELRERNVTAV  116

Query  186  GELCDDSFEEHVLAYDPAAAGIYLHGLNFNVPQFATLPSSEVHNFADTWGFKKAKYLVYD  245
             ELCDDSFEEH++AY P  AG+YLHG+N+N P+F T P  EV  FA  WGFKK +++  D
Sbjct  117  FELCDDSFEEHIVAYYPEKAGLYLHGINYNTPEFVTYPMEEVQKFAKEWGFKKTEFVTLD  176

Query  246  DIHSVKKFLDHCAETGTWDGRETEGFVIRCQLGEGGGPYRDWFFKYKFEEPYL  298
            DI  VKKFL+  AETG+++GRE EGFVIRC+ G          FKYKF+EPY 
Sbjct  177  DIEEVKKFLEEVAETGSYNGREIEGFVIRCKSG--------DMFKYKFKEPYY  221


>CDD:400549 pfam08303, tRNA_lig_kinase, tRNA ligase kinase domain.  This 
domain is found in fungal tRNA ligases and has kinase activity. 
tRNA ligases are enzymes required for the splicing of precursor 
tRNA molecules containing introns. This family contains 
a P-loop motif.
Length=168

 Score = 212 bits (542),  Expect = 6e-65, Method: Composition-based stats.
 Identities = 81/173 (47%), Positives = 106/173 (61%), Gaps = 15/173 (9%)

Query  386  ILAPIASLGCGKTTLALALTKLFG-WGHVQNDNIPKQKNKPKRFAFEIANLLADK--PVV  442
            +L PIA++GCGKTT++L L  LF  WGHVQNDNI        +       LLA     VV
Sbjct  1    LLVPIATIGCGKTTVSLTLNNLFPEWGHVQNDNI--TGKDKSKLMKAALELLAKDGSSVV  58

Query  443  IADRNNHQRREREQLMEDI-------LPGIPGARFVALHYVHEPKDVLLPSIREVTRKRV  495
            IADRNNHQ RER+QL   I       LP     + +AL +V E     L  +RE+TR RV
Sbjct  59   IADRNNHQSRERKQLFTWIDQLKDNYLPYDTNLKVIALSFVDEDD---LEEVREITRDRV  115

Query  496  LERGDNHQTIRAGTKNSDEIVGIMEGFLKRFEGINREREPDSGFDHVIDLDVA  548
            L+RGDNHQ+I+  +    +++GIM GF+KRF+ +N  + PD+ FD VI+LDV 
Sbjct  116  LKRGDNHQSIKVESMGEKKVMGIMNGFIKRFQPVNPAKSPDNMFDLVIELDVL  168



Lambda      K        H        a         alpha
   0.318    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1060844846


Query= TCONS_00001597

Length=256
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462117 pfam07200, Mod_r, Modifier of rudimentary (Mod(r)) pro...  103     2e-28


>CDD:462117 pfam07200, Mod_r, Modifier of rudimentary (Mod(r)) protein.  
This family represents a conserved region approximately 150 
residues long within a number of eukaryotic proteins that show 
homology with Drosophila melanogaster Modifier of rudimentary 
(Mod(r)) proteins. The N-terminal half of Mod(r) proteins 
is acidic, whereas the C-terminal half is basic, and both 
of these regions are represented in this family. Members of 
this family include the Vps37 subunit of the endosomal sorting 
complex ESCRT-I, a complex involved in recruiting transport 
machinery for protein sorting at the multivesicular body 
(MVB). The yeast ESCRT-I complex consists of three proteins 
(Vps23, Vps28 and Vps37). The mammalian homolog of Vps37 interacts 
with Tsg101 (pfam05743) through its mod(r) domain and 
its function is essential for lysosomal sorting of EGF receptors.
Length=146

 Score = 103 bits (260),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 81/154 (53%), Gaps = 8/154 (5%)

Query  92   KDKSTVDLQAILRDPNLISALASQHPACTAQQENLQSLLKYNQDLTKHLLELQARLDEQR  151
            +D ST +LQ +L D + + A     P   A Q   + LL  N+ L +  L L+  L+E R
Sbjct  1    EDLSTEELQELLNDEDKLDAFVHSLPQVKALQAEKEELLAENESLAEENLSLEPELEELR  60

Query  152  ASTETLLLKHQSLEVSWRKKQSEMDAALAPWSPKALYQRLSASISEQEAVCRAVEESFLE  211
            +  + LL + ++L+  + +K+ E+D  L+ +SP AL  RL A+ +E E    A+ ESFLE
Sbjct  61   SQLQELLEELKALKSEYEEKEQELDELLSKFSPDALLARLQAAAAEAEEESEALAESFLE  120

Query  212  KEHHGRATEKEVADWVRRVRAEAAKLAARREAKA  245
             E        ++ +++++ + E  KL   R  K 
Sbjct  121  GEI-------DLDEFLKQFK-EKRKLYHLRREKL  146



Lambda      K        H        a         alpha
   0.311    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00007246

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00007245

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00007247

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00001598

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00007250

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00007249

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00001599

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00007252

Length=843
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427435 pfam03666, NPR3, Nitrogen Permease regulator of amino ...  606     0.0  


>CDD:427435 pfam03666, NPR3, Nitrogen Permease regulator of amino acid transport 
activity 3.  This family, also known in yeasts as Rmd11, 
complexes with NPR2, pfam06218. This complex heterodimer 
is responsible for inactivating TORC1. an evolutionarily conserved 
protein complex that controls cell size via nutritional 
input signals, specifically, in response to amino acid 
starvation.
Length=442

 Score = 606 bits (1564),  Expect = 0.0, Method: Composition-based stats.
 Identities = 223/473 (47%), Positives = 290/473 (61%), Gaps = 46/473 (10%)

Query  179  GLPADVWEKLLSPSPAWHKRRFEVGINDLAFIGWPVFVREDGTWRKQRRKKKKKRRADWE  238
            G   +    LLSP      RRFE+ ++DLAF+G PV VREDGTWRK++ K K+ R +  +
Sbjct  1    GFDTEFLASLLSPPRELCNRRFELTVDDLAFLGHPVHVREDGTWRKKKDKSKRGRSSRRK  60

Query  239  GGELGHNENAEDAPDDEDGDAGGNASGGGGLMAASTETLSPKQVTLSEAKRGSGSSGKAA  298
                  + + ED+                    AS      K+ +  ++   + S+    
Sbjct  61   ETRSRDSSDGEDSSSARS---------------ASLSENGSKEASSGDSSNNASSTDDED  105

Query  299  RSLVDCLDGDDKDSMTMFNVVFVLDPPLLEYSMRTKEVYDNIIKKFAKALKWEQARTDYV  358
                +    DDK SMTMF++VFVL+PP  EY+ R  E+YDN++KK  KALK+EQA+++YV
Sbjct  106  EDD-ESESEDDKSSMTMFHLVFVLNPPPSEYNSRVDEMYDNVVKKLTKALKYEQAKSNYV  164

Query  359  WREAQHISHLKEKAKERRTSLNTLYTELITQSSLARAIYTVHTSISASKIASVPLSPDVS  418
            W+E + I  LKEKA+E  T ++ LY E++++SSLARAI  ++ +IS +KIA++ L+ D +
Sbjct  165  WKECEKILKLKEKAREDGTPMSELYREILSKSSLARAIRDLYEAISQNKIANLTLNDDKT  224

Query  419  ISLQIPPLTSTPYLPGPTDKAYPGLWLTTADSVTPVEDPTADEYTAPHQVLAKHFALLLL  478
            ISLQIP +T   YLP  T+   PG WLTTA                    LA  FALLLL
Sbjct  225  ISLQIPIITEFSYLPNFTEPPLPGSWLTTAL---------------NPPFLAPWFALLLL  269

Query  479  DNEAAILRDV--EASGGALAPALAHYLRCSKPTKSFA------------QISASSGIPLS  524
            D+   I++D+   A    LAP LAH++R  KPT SFA            Q+S S+ IPLS
Sbjct  270  DDPDKIIKDLPHSADDDELAPLLAHFIRIIKPTLSFADYATLLDWDLEEQVSQSNSIPLS  329

Query  525  TIQMLASHLVYWRRARAIPPIHQRDTYIVSPNCDLSKLEVATAAYQAAFPTLPSLPKMLS  584
             I+ LA HL+YWRRARAIPP+H RDTYIVSPN DLSKL   +A +   FPTLPSLPK LS
Sbjct  330  QIRPLARHLIYWRRARAIPPLHPRDTYIVSPNADLSKLPQLSAEFARTFPTLPSLPKFLS  389

Query  585  ALS-GTPRPYGSFIPSKDHKETYFAILAWLLRGGWVTQLRSFARVKVTPEIKM  636
             LS   PRPYGS IPSKDH+  Y   LAWLLRGGWVTQL +FAR++VTPEIKM
Sbjct  390  LLSTSKPRPYGSIIPSKDHRPLYLDALAWLLRGGWVTQLHTFARIRVTPEIKM  442



Lambda      K        H        a         alpha
   0.312    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1073764472


Query= TCONS_00007251

Length=843
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427435 pfam03666, NPR3, Nitrogen Permease regulator of amino ...  606     0.0  


>CDD:427435 pfam03666, NPR3, Nitrogen Permease regulator of amino acid transport 
activity 3.  This family, also known in yeasts as Rmd11, 
complexes with NPR2, pfam06218. This complex heterodimer 
is responsible for inactivating TORC1. an evolutionarily conserved 
protein complex that controls cell size via nutritional 
input signals, specifically, in response to amino acid 
starvation.
Length=442

 Score = 606 bits (1564),  Expect = 0.0, Method: Composition-based stats.
 Identities = 223/473 (47%), Positives = 290/473 (61%), Gaps = 46/473 (10%)

Query  179  GLPADVWEKLLSPSPAWHKRRFEVGINDLAFIGWPVFVREDGTWRKQRRKKKKKRRADWE  238
            G   +    LLSP      RRFE+ ++DLAF+G PV VREDGTWRK++ K K+ R +  +
Sbjct  1    GFDTEFLASLLSPPRELCNRRFELTVDDLAFLGHPVHVREDGTWRKKKDKSKRGRSSRRK  60

Query  239  GGELGHNENAEDAPDDEDGDAGGNASGGGGLMAASTETLSPKQVTLSEAKRGSGSSGKAA  298
                  + + ED+                    AS      K+ +  ++   + S+    
Sbjct  61   ETRSRDSSDGEDSSSARS---------------ASLSENGSKEASSGDSSNNASSTDDED  105

Query  299  RSLVDCLDGDDKDSMTMFNVVFVLDPPLLEYSMRTKEVYDNIIKKFAKALKWEQARTDYV  358
                +    DDK SMTMF++VFVL+PP  EY+ R  E+YDN++KK  KALK+EQA+++YV
Sbjct  106  EDD-ESESEDDKSSMTMFHLVFVLNPPPSEYNSRVDEMYDNVVKKLTKALKYEQAKSNYV  164

Query  359  WREAQHISHLKEKAKERRTSLNTLYTELITQSSLARAIYTVHTSISASKIASVPLSPDVS  418
            W+E + I  LKEKA+E  T ++ LY E++++SSLARAI  ++ +IS +KIA++ L+ D +
Sbjct  165  WKECEKILKLKEKAREDGTPMSELYREILSKSSLARAIRDLYEAISQNKIANLTLNDDKT  224

Query  419  ISLQIPPLTSTPYLPGPTDKAYPGLWLTTADSVTPVEDPTADEYTAPHQVLAKHFALLLL  478
            ISLQIP +T   YLP  T+   PG WLTTA                    LA  FALLLL
Sbjct  225  ISLQIPIITEFSYLPNFTEPPLPGSWLTTAL---------------NPPFLAPWFALLLL  269

Query  479  DNEAAILRDV--EASGGALAPALAHYLRCSKPTKSFA------------QISASSGIPLS  524
            D+   I++D+   A    LAP LAH++R  KPT SFA            Q+S S+ IPLS
Sbjct  270  DDPDKIIKDLPHSADDDELAPLLAHFIRIIKPTLSFADYATLLDWDLEEQVSQSNSIPLS  329

Query  525  TIQMLASHLVYWRRARAIPPIHQRDTYIVSPNCDLSKLEVATAAYQAAFPTLPSLPKMLS  584
             I+ LA HL+YWRRARAIPP+H RDTYIVSPN DLSKL   +A +   FPTLPSLPK LS
Sbjct  330  QIRPLARHLIYWRRARAIPPLHPRDTYIVSPNADLSKLPQLSAEFARTFPTLPSLPKFLS  389

Query  585  ALS-GTPRPYGSFIPSKDHKETYFAILAWLLRGGWVTQLRSFARVKVTPEIKM  636
             LS   PRPYGS IPSKDH+  Y   LAWLLRGGWVTQL +FAR++VTPEIKM
Sbjct  390  LLSTSKPRPYGSIIPSKDHRPLYLDALAWLLRGGWVTQLHTFARIRVTPEIKM  442



Lambda      K        H        a         alpha
   0.312    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1073764472


Query= TCONS_00001602

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00007253

Length=843
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427435 pfam03666, NPR3, Nitrogen Permease regulator of amino ...  606     0.0  


>CDD:427435 pfam03666, NPR3, Nitrogen Permease regulator of amino acid transport 
activity 3.  This family, also known in yeasts as Rmd11, 
complexes with NPR2, pfam06218. This complex heterodimer 
is responsible for inactivating TORC1. an evolutionarily conserved 
protein complex that controls cell size via nutritional 
input signals, specifically, in response to amino acid 
starvation.
Length=442

 Score = 606 bits (1564),  Expect = 0.0, Method: Composition-based stats.
 Identities = 223/473 (47%), Positives = 290/473 (61%), Gaps = 46/473 (10%)

Query  179  GLPADVWEKLLSPSPAWHKRRFEVGINDLAFIGWPVFVREDGTWRKQRRKKKKKRRADWE  238
            G   +    LLSP      RRFE+ ++DLAF+G PV VREDGTWRK++ K K+ R +  +
Sbjct  1    GFDTEFLASLLSPPRELCNRRFELTVDDLAFLGHPVHVREDGTWRKKKDKSKRGRSSRRK  60

Query  239  GGELGHNENAEDAPDDEDGDAGGNASGGGGLMAASTETLSPKQVTLSEAKRGSGSSGKAA  298
                  + + ED+                    AS      K+ +  ++   + S+    
Sbjct  61   ETRSRDSSDGEDSSSARS---------------ASLSENGSKEASSGDSSNNASSTDDED  105

Query  299  RSLVDCLDGDDKDSMTMFNVVFVLDPPLLEYSMRTKEVYDNIIKKFAKALKWEQARTDYV  358
                +    DDK SMTMF++VFVL+PP  EY+ R  E+YDN++KK  KALK+EQA+++YV
Sbjct  106  EDD-ESESEDDKSSMTMFHLVFVLNPPPSEYNSRVDEMYDNVVKKLTKALKYEQAKSNYV  164

Query  359  WREAQHISHLKEKAKERRTSLNTLYTELITQSSLARAIYTVHTSISASKIASVPLSPDVS  418
            W+E + I  LKEKA+E  T ++ LY E++++SSLARAI  ++ +IS +KIA++ L+ D +
Sbjct  165  WKECEKILKLKEKAREDGTPMSELYREILSKSSLARAIRDLYEAISQNKIANLTLNDDKT  224

Query  419  ISLQIPPLTSTPYLPGPTDKAYPGLWLTTADSVTPVEDPTADEYTAPHQVLAKHFALLLL  478
            ISLQIP +T   YLP  T+   PG WLTTA                    LA  FALLLL
Sbjct  225  ISLQIPIITEFSYLPNFTEPPLPGSWLTTAL---------------NPPFLAPWFALLLL  269

Query  479  DNEAAILRDV--EASGGALAPALAHYLRCSKPTKSFA------------QISASSGIPLS  524
            D+   I++D+   A    LAP LAH++R  KPT SFA            Q+S S+ IPLS
Sbjct  270  DDPDKIIKDLPHSADDDELAPLLAHFIRIIKPTLSFADYATLLDWDLEEQVSQSNSIPLS  329

Query  525  TIQMLASHLVYWRRARAIPPIHQRDTYIVSPNCDLSKLEVATAAYQAAFPTLPSLPKMLS  584
             I+ LA HL+YWRRARAIPP+H RDTYIVSPN DLSKL   +A +   FPTLPSLPK LS
Sbjct  330  QIRPLARHLIYWRRARAIPPLHPRDTYIVSPNADLSKLPQLSAEFARTFPTLPSLPKFLS  389

Query  585  ALS-GTPRPYGSFIPSKDHKETYFAILAWLLRGGWVTQLRSFARVKVTPEIKM  636
             LS   PRPYGS IPSKDH+  Y   LAWLLRGGWVTQL +FAR++VTPEIKM
Sbjct  390  LLSTSKPRPYGSIIPSKDHRPLYLDALAWLLRGGWVTQLHTFARIRVTPEIKM  442



Lambda      K        H        a         alpha
   0.312    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1073764472


Query= TCONS_00001603

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00007254

Length=843
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427435 pfam03666, NPR3, Nitrogen Permease regulator of amino ...  606     0.0  


>CDD:427435 pfam03666, NPR3, Nitrogen Permease regulator of amino acid transport 
activity 3.  This family, also known in yeasts as Rmd11, 
complexes with NPR2, pfam06218. This complex heterodimer 
is responsible for inactivating TORC1. an evolutionarily conserved 
protein complex that controls cell size via nutritional 
input signals, specifically, in response to amino acid 
starvation.
Length=442

 Score = 606 bits (1564),  Expect = 0.0, Method: Composition-based stats.
 Identities = 223/473 (47%), Positives = 290/473 (61%), Gaps = 46/473 (10%)

Query  179  GLPADVWEKLLSPSPAWHKRRFEVGINDLAFIGWPVFVREDGTWRKQRRKKKKKRRADWE  238
            G   +    LLSP      RRFE+ ++DLAF+G PV VREDGTWRK++ K K+ R +  +
Sbjct  1    GFDTEFLASLLSPPRELCNRRFELTVDDLAFLGHPVHVREDGTWRKKKDKSKRGRSSRRK  60

Query  239  GGELGHNENAEDAPDDEDGDAGGNASGGGGLMAASTETLSPKQVTLSEAKRGSGSSGKAA  298
                  + + ED+                    AS      K+ +  ++   + S+    
Sbjct  61   ETRSRDSSDGEDSSSARS---------------ASLSENGSKEASSGDSSNNASSTDDED  105

Query  299  RSLVDCLDGDDKDSMTMFNVVFVLDPPLLEYSMRTKEVYDNIIKKFAKALKWEQARTDYV  358
                +    DDK SMTMF++VFVL+PP  EY+ R  E+YDN++KK  KALK+EQA+++YV
Sbjct  106  EDD-ESESEDDKSSMTMFHLVFVLNPPPSEYNSRVDEMYDNVVKKLTKALKYEQAKSNYV  164

Query  359  WREAQHISHLKEKAKERRTSLNTLYTELITQSSLARAIYTVHTSISASKIASVPLSPDVS  418
            W+E + I  LKEKA+E  T ++ LY E++++SSLARAI  ++ +IS +KIA++ L+ D +
Sbjct  165  WKECEKILKLKEKAREDGTPMSELYREILSKSSLARAIRDLYEAISQNKIANLTLNDDKT  224

Query  419  ISLQIPPLTSTPYLPGPTDKAYPGLWLTTADSVTPVEDPTADEYTAPHQVLAKHFALLLL  478
            ISLQIP +T   YLP  T+   PG WLTTA                    LA  FALLLL
Sbjct  225  ISLQIPIITEFSYLPNFTEPPLPGSWLTTAL---------------NPPFLAPWFALLLL  269

Query  479  DNEAAILRDV--EASGGALAPALAHYLRCSKPTKSFA------------QISASSGIPLS  524
            D+   I++D+   A    LAP LAH++R  KPT SFA            Q+S S+ IPLS
Sbjct  270  DDPDKIIKDLPHSADDDELAPLLAHFIRIIKPTLSFADYATLLDWDLEEQVSQSNSIPLS  329

Query  525  TIQMLASHLVYWRRARAIPPIHQRDTYIVSPNCDLSKLEVATAAYQAAFPTLPSLPKMLS  584
             I+ LA HL+YWRRARAIPP+H RDTYIVSPN DLSKL   +A +   FPTLPSLPK LS
Sbjct  330  QIRPLARHLIYWRRARAIPPLHPRDTYIVSPNADLSKLPQLSAEFARTFPTLPSLPKFLS  389

Query  585  ALS-GTPRPYGSFIPSKDHKETYFAILAWLLRGGWVTQLRSFARVKVTPEIKM  636
             LS   PRPYGS IPSKDH+  Y   LAWLLRGGWVTQL +FAR++VTPEIKM
Sbjct  390  LLSTSKPRPYGSIIPSKDHRPLYLDALAWLLRGGWVTQLHTFARIRVTPEIKM  442



Lambda      K        H        a         alpha
   0.312    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1073764472


Query= TCONS_00001605

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00007255

Length=316
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427435 pfam03666, NPR3, Nitrogen Permease regulator of amino ...  229     7e-73


>CDD:427435 pfam03666, NPR3, Nitrogen Permease regulator of amino acid transport 
activity 3.  This family, also known in yeasts as Rmd11, 
complexes with NPR2, pfam06218. This complex heterodimer 
is responsible for inactivating TORC1. an evolutionarily conserved 
protein complex that controls cell size via nutritional 
input signals, specifically, in response to amino acid 
starvation.
Length=442

 Score = 229 bits (587),  Expect = 7e-73, Method: Composition-based stats.
 Identities = 79/110 (72%), Positives = 87/110 (79%), Gaps = 1/110 (1%)

Query  1    MLASHLVYWRRARAIPPIHQRDTYIVSPNCDLSKLEVATAAYQAAFPTLPSLPKMLSALS  60
             LA HL+YWRRARAIPP+H RDTYIVSPN DLSKL   +A +   FPTLPSLPK LS LS
Sbjct  333  PLARHLIYWRRARAIPPLHPRDTYIVSPNADLSKLPQLSAEFARTFPTLPSLPKFLSLLS  392

Query  61   -GTPRPYGSFIPSKDHKETYFAILAWLLRGGWVTQLRSFARVKVTPEIKM  109
               PRPYGS IPSKDH+  Y   LAWLLRGGWVTQL +FAR++VTPEIKM
Sbjct  393  TSKPRPYGSIIPSKDHRPLYLDALAWLLRGGWVTQLHTFARIRVTPEIKM  442



Lambda      K        H        a         alpha
   0.315    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00001608

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00001607

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00001609

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00001610

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.127    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00001612

Length=316
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427435 pfam03666, NPR3, Nitrogen Permease regulator of amino ...  229     7e-73


>CDD:427435 pfam03666, NPR3, Nitrogen Permease regulator of amino acid transport 
activity 3.  This family, also known in yeasts as Rmd11, 
complexes with NPR2, pfam06218. This complex heterodimer 
is responsible for inactivating TORC1. an evolutionarily conserved 
protein complex that controls cell size via nutritional 
input signals, specifically, in response to amino acid 
starvation.
Length=442

 Score = 229 bits (587),  Expect = 7e-73, Method: Composition-based stats.
 Identities = 79/110 (72%), Positives = 87/110 (79%), Gaps = 1/110 (1%)

Query  1    MLASHLVYWRRARAIPPIHQRDTYIVSPNCDLSKLEVATAAYQAAFPTLPSLPKMLSALS  60
             LA HL+YWRRARAIPP+H RDTYIVSPN DLSKL   +A +   FPTLPSLPK LS LS
Sbjct  333  PLARHLIYWRRARAIPPLHPRDTYIVSPNADLSKLPQLSAEFARTFPTLPSLPKFLSLLS  392

Query  61   -GTPRPYGSFIPSKDHKETYFAILAWLLRGGWVTQLRSFARVKVTPEIKM  109
               PRPYGS IPSKDH+  Y   LAWLLRGGWVTQL +FAR++VTPEIKM
Sbjct  393  TSKPRPYGSIIPSKDHRPLYLDALAWLLRGGWVTQLHTFARIRVTPEIKM  442



Lambda      K        H        a         alpha
   0.315    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00001613

Length=619


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.121    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787563556


Query= TCONS_00007256

Length=619


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.121    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0769    0.140     1.90     42.6     43.6 

Effective search space used: 787563556


Query= TCONS_00007257

Length=772
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461635 pfam05383, La, La domain. This presumed domain is foun...  98.6    1e-25


>CDD:461635 pfam05383, La, La domain.  This presumed domain is found at the 
N-terminus of La RNA-binding proteins as well as other proteins. 
The function of this region is uncertain.
Length=59

 Score = 98.6 bits (247),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 34/59 (58%), Positives = 43/59 (73%), Gaps = 2/59 (3%)

Query  615  ISMQLEYYFSVDNLCKDLFLRKQMDS--QGFVPLSVIAGFKRVKTLTEDFEMLRHACRQ  671
            I  Q+EYYFS +NL KD FLRKQMD    G+VP+SVIA FKR+K LT D +++  A R+
Sbjct  1    IKKQVEYYFSDENLPKDKFLRKQMDKDPDGYVPISVIASFKRMKKLTTDIDLIAEALRE  59



Lambda      K        H        a         alpha
   0.306    0.123    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 986593056


Query= TCONS_00007258

Length=777
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461635 pfam05383, La, La domain. This presumed domain is foun...  98.6    1e-25


>CDD:461635 pfam05383, La, La domain.  This presumed domain is found at the 
N-terminus of La RNA-binding proteins as well as other proteins. 
The function of this region is uncertain.
Length=59

 Score = 98.6 bits (247),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 34/59 (58%), Positives = 43/59 (73%), Gaps = 2/59 (3%)

Query  615  ISMQLEYYFSVDNLCKDLFLRKQMDS--QGFVPLSVIAGFKRVKTLTEDFEMLRHACRQ  671
            I  Q+EYYFS +NL KD FLRKQMD    G+VP+SVIA FKR+K LT D +++  A R+
Sbjct  1    IKKQVEYYFSDENLPKDKFLRKQMDKDPDGYVPISVIASFKRMKKLTTDIDLIAEALRE  59



Lambda      K        H        a         alpha
   0.306    0.123    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 993868816


Query= TCONS_00001614

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426078 pfam01145, Band_7, SPFH domain / Band 7 family. This f...  124     3e-34
CDD:465062 pfam16200, Band_7_C, C-terminal region of band_7. This...  88.3    2e-22


>CDD:426078 pfam01145, Band_7, SPFH domain / Band 7 family.  This family 
has been called SPFH, Band 7 or PHB domain. Recent phylogenetic 
analysis has shown this domain to be a slipin or Stomatin-like 
integral membrane domain conserved from protozoa to mammals.
Length=177

 Score = 124 bits (313),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 86/176 (49%), Gaps = 6/176 (3%)

Query  93   VPQQTAWIVERMGKFHRILEPGLAILIPFIDRIAYVKSLKESAIEIPSQNAITADNVTLE  152
            VP     +V R GK  R+LEPGL  +IPFI R+  V  ++   +E+  Q  +T D V + 
Sbjct  3    VPPGEVGVVTRFGKLSRVLEPGLHFIIPFIQRVVTV-DVRVQTLEVSVQTVLTKDGVPVN  61

Query  153  LDGVLYTRV--FDAYKASYGVEDAEYA---ISQLAQTTMRSEIGQLTLDHVLKERATLNT  207
            +D  +  RV   D  K    V  ++     + ++ ++ +R  I + TL+ +L  R  L  
Sbjct  62   VDVTVIYRVNPDDPPKLVQNVFGSDDLQELLRRVLESALREIIARYTLEELLSNREELAE  121

Query  208  NITQAINEAAQDWGVVCLRYEIRDIHAPEGVVAAMHRQVTAERSKRAEILESEGQR  263
             I  A+ E    +GV  +  +I DI  P  +  A+  + TAE+   AEI  +E + 
Sbjct  122  EIKNALQEELAKYGVEIIDVQITDIDPPPEIAEAIEAKQTAEQEAEAEIARAEAEA  177


>CDD:465062 pfam16200, Band_7_C, C-terminal region of band_7.  This domain 
is found on a subset of proteins as a C-terminal extension 
of the Band_7 family, pfam01145. It is found in proteins fro 
bacteria to fungi, plants and mammals.
Length=63

 Score = 88.3 bits (220),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 33/65 (51%), Positives = 45/65 (69%), Gaps = 2/65 (3%)

Query  311  EVVAKAIAEGSENAHSAVSLSVAEKYVEAFSNLAREGTAVVVPGNVGDLGGMIANAMAVY  370
            E VA+AI +       AVSL VAE+YVEAF  LA+E   V++P N+GD+  M+A AM++Y
Sbjct  1    EKVAEAIKK--PGGQEAVSLRVAEQYVEAFGKLAKESNTVILPANLGDVSSMVAQAMSIY  58

Query  371  GKVNE  375
             KVN+
Sbjct  59   KKVNK  63



Lambda      K        H        a         alpha
   0.312    0.126    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00001615

Length=786
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461635 pfam05383, La, La domain. This presumed domain is foun...  98.6    1e-25


>CDD:461635 pfam05383, La, La domain.  This presumed domain is found at the 
N-terminus of La RNA-binding proteins as well as other proteins. 
The function of this region is uncertain.
Length=59

 Score = 98.6 bits (247),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 34/59 (58%), Positives = 43/59 (73%), Gaps = 2/59 (3%)

Query  615  ISMQLEYYFSVDNLCKDLFLRKQMDS--QGFVPLSVIAGFKRVKTLTEDFEMLRHACRQ  671
            I  Q+EYYFS +NL KD FLRKQMD    G+VP+SVIA FKR+K LT D +++  A R+
Sbjct  1    IKKQVEYYFSDENLPKDKFLRKQMDKDPDGYVPISVIASFKRMKKLTTDIDLIAEALRE  59



Lambda      K        H        a         alpha
   0.306    0.123    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1006965184


Query= TCONS_00007259

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426078 pfam01145, Band_7, SPFH domain / Band 7 family. This f...  67.3    9e-15


>CDD:426078 pfam01145, Band_7, SPFH domain / Band 7 family.  This family 
has been called SPFH, Band 7 or PHB domain. Recent phylogenetic 
analysis has shown this domain to be a slipin or Stomatin-like 
integral membrane domain conserved from protozoa to mammals.
Length=177

 Score = 67.3 bits (165),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 3/80 (4%)

Query  93   VPQQTAWIVERMGKFHRILEPGLAILIPFIDRIAYVKSLKESAIEIPSQNAITADNVTLE  152
            VP     +V R GK  R+LEPGL  +IPFI R+  V  ++   +E+  Q  +T D V + 
Sbjct  3    VPPGEVGVVTRFGKLSRVLEPGLHFIIPFIQRVVTV-DVRVQTLEVSVQTVLTKDGVPVN  61

Query  153  LDGVLYTRV--FDAYKASTD  170
            +D  +  RV   D  K   +
Sbjct  62   VDVTVIYRVNPDDPPKLVQN  81



Lambda      K        H        a         alpha
   0.318    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00007260

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426078 pfam01145, Band_7, SPFH domain / Band 7 family. This f...  124     3e-34
CDD:465062 pfam16200, Band_7_C, C-terminal region of band_7. This...  88.3    2e-22


>CDD:426078 pfam01145, Band_7, SPFH domain / Band 7 family.  This family 
has been called SPFH, Band 7 or PHB domain. Recent phylogenetic 
analysis has shown this domain to be a slipin or Stomatin-like 
integral membrane domain conserved from protozoa to mammals.
Length=177

 Score = 124 bits (313),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 86/176 (49%), Gaps = 6/176 (3%)

Query  93   VPQQTAWIVERMGKFHRILEPGLAILIPFIDRIAYVKSLKESAIEIPSQNAITADNVTLE  152
            VP     +V R GK  R+LEPGL  +IPFI R+  V  ++   +E+  Q  +T D V + 
Sbjct  3    VPPGEVGVVTRFGKLSRVLEPGLHFIIPFIQRVVTV-DVRVQTLEVSVQTVLTKDGVPVN  61

Query  153  LDGVLYTRV--FDAYKASYGVEDAEYA---ISQLAQTTMRSEIGQLTLDHVLKERATLNT  207
            +D  +  RV   D  K    V  ++     + ++ ++ +R  I + TL+ +L  R  L  
Sbjct  62   VDVTVIYRVNPDDPPKLVQNVFGSDDLQELLRRVLESALREIIARYTLEELLSNREELAE  121

Query  208  NITQAINEAAQDWGVVCLRYEIRDIHAPEGVVAAMHRQVTAERSKRAEILESEGQR  263
             I  A+ E    +GV  +  +I DI  P  +  A+  + TAE+   AEI  +E + 
Sbjct  122  EIKNALQEELAKYGVEIIDVQITDIDPPPEIAEAIEAKQTAEQEAEAEIARAEAEA  177


>CDD:465062 pfam16200, Band_7_C, C-terminal region of band_7.  This domain 
is found on a subset of proteins as a C-terminal extension 
of the Band_7 family, pfam01145. It is found in proteins fro 
bacteria to fungi, plants and mammals.
Length=63

 Score = 88.3 bits (220),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 33/65 (51%), Positives = 45/65 (69%), Gaps = 2/65 (3%)

Query  311  EVVAKAIAEGSENAHSAVSLSVAEKYVEAFSNLAREGTAVVVPGNVGDLGGMIANAMAVY  370
            E VA+AI +       AVSL VAE+YVEAF  LA+E   V++P N+GD+  M+A AM++Y
Sbjct  1    EKVAEAIKK--PGGQEAVSLRVAEQYVEAFGKLAKESNTVILPANLGDVSSMVAQAMSIY  58

Query  371  GKVNE  375
             KVN+
Sbjct  59   KKVNK  63



Lambda      K        H        a         alpha
   0.312    0.126    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00001618

Length=953
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462211 pfam07569, Hira, TUP1-like enhancer of split. The Hira...  336     6e-110


>CDD:462211 pfam07569, Hira, TUP1-like enhancer of split.  The Hira proteins 
are found in a range of eukaryotes and are implicated in 
the assembly of repressive chromatin. These proteins also contain 
pfam00400.
Length=221

 Score = 336 bits (864),  Expect = 6e-110, Method: Composition-based stats.
 Identities = 110/234 (47%), Positives = 156/234 (67%), Gaps = 13/234 (6%)

Query  638  GRRLVSALVLEAQPVILECNGPWILCISAVGMCYVWNVKHLSSPHPPISLQPVLDAAIHT  697
            GRRL+  +VL +    LEC+G ++L +++VG+ YVW++K   +  PP+SL P+LD++   
Sbjct  1    GRRLLPPIVLGSPASFLECSGSYLLAVTSVGLLYVWDIKKQKALLPPVSLAPLLDSSSRY  60

Query  698  LGAHPSAAPAITNARINSEGRVVVALSNGEGYSYSPSMYTWQRVSEAWWAVGSQYWNSTE  757
                 + AP IT+A + S G  +V LSNG+GY Y  S+ TW R+S++WWA+GSQYW+ST 
Sbjct  61   SD-KLTRAPTITSASLTSNGVPIVTLSNGDGYLYDKSLETWLRISDSWWALGSQYWDSTG  119

Query  758  APVGNLQSAGPQQDKETTAAVSAGIIPFLERNTTNETLLRGRAYFLQRLIKVLLSREGYE  817
            +   + QS+             AGI+ FLER T  E L +GR   LQRL K LL +EG+E
Sbjct  120  SSRSSSQSSA------------AGILSFLERKTNEELLRKGRGRLLQRLAKTLLMKEGFE  167

Query  818  SFESSVSIAHMENRLAAALSLGAKEEFRLYLSMYAKRLGAEGLKMKVEELLKGL  871
            +FE+ V++AH+ENRLAAAL LG+ +E+R +L MYAKRL  EGLK ++ EL K L
Sbjct  168  NFETVVTLAHLENRLAAALLLGSPDEYRHWLLMYAKRLAEEGLKGRLRELCKEL  221



Lambda      K        H        a         alpha
   0.314    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1213405732


Query= TCONS_00001617

Length=1056
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462211 pfam07569, Hira, TUP1-like enhancer of split. The Hira...  336     5e-109


>CDD:462211 pfam07569, Hira, TUP1-like enhancer of split.  The Hira proteins 
are found in a range of eukaryotes and are implicated in 
the assembly of repressive chromatin. These proteins also contain 
pfam00400.
Length=221

 Score = 336 bits (864),  Expect = 5e-109, Method: Composition-based stats.
 Identities = 110/234 (47%), Positives = 156/234 (67%), Gaps = 13/234 (6%)

Query  747  GRRLVSALVLEAQPVILECNGPWILCISAVGMCYVWNVKHLSSPHPPISLQPVLDAAIHT  806
            GRRL+  +VL +    LEC+G ++L +++VG+ YVW++K   +  PP+SL P+LD++   
Sbjct  1    GRRLLPPIVLGSPASFLECSGSYLLAVTSVGLLYVWDIKKQKALLPPVSLAPLLDSSSRY  60

Query  807  LGAHPSAAPAITNARINSEGRVVVALSNGEGYSYSPSMYTWQRVSEAWWAVGSQYWNSTE  866
                 + AP IT+A + S G  +V LSNG+GY Y  S+ TW R+S++WWA+GSQYW+ST 
Sbjct  61   SD-KLTRAPTITSASLTSNGVPIVTLSNGDGYLYDKSLETWLRISDSWWALGSQYWDSTG  119

Query  867  APVGNLQSAGPQQDKETTAAVSAGIIPFLERNTTNETLLRGRAYFLQRLIKVLLSREGYE  926
            +   + QS+             AGI+ FLER T  E L +GR   LQRL K LL +EG+E
Sbjct  120  SSRSSSQSSA------------AGILSFLERKTNEELLRKGRGRLLQRLAKTLLMKEGFE  167

Query  927  SFESSVSIAHMENRLAAALSLGAKEEFRLYLSMYAKRLGAEGLKMKVEELLKGL  980
            +FE+ V++AH+ENRLAAAL LG+ +E+R +L MYAKRL  EGLK ++ EL K L
Sbjct  168  NFETVVTLAHLENRLAAALLLGSPDEYRHWLLMYAKRLAEEGLKGRLRELCKEL  221



Lambda      K        H        a         alpha
   0.315    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1359240960


Query= TCONS_00001616

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465062 pfam16200, Band_7_C, C-terminal region of band_7. This...  83.7    1e-21
CDD:426078 pfam01145, Band_7, SPFH domain / Band 7 family. This f...  64.3    3e-13


>CDD:465062 pfam16200, Band_7_C, C-terminal region of band_7.  This domain 
is found on a subset of proteins as a C-terminal extension 
of the Band_7 family, pfam01145. It is found in proteins fro 
bacteria to fungi, plants and mammals.
Length=63

 Score = 83.7 bits (208),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 33/65 (51%), Positives = 45/65 (69%), Gaps = 2/65 (3%)

Query  126  EVVAKAIAEGSENAHSAVSLSVAEKYVEAFSNLAREGTAVVVPGNVGDLGGMIANAMAVY  185
            E VA+AI +       AVSL VAE+YVEAF  LA+E   V++P N+GD+  M+A AM++Y
Sbjct  1    EKVAEAIKK--PGGQEAVSLRVAEQYVEAFGKLAKESNTVILPANLGDVSSMVAQAMSIY  58

Query  186  GKVNE  190
             KVN+
Sbjct  59   KKVNK  63


>CDD:426078 pfam01145, Band_7, SPFH domain / Band 7 family.  This family 
has been called SPFH, Band 7 or PHB domain. Recent phylogenetic 
analysis has shown this domain to be a slipin or Stomatin-like 
integral membrane domain conserved from protozoa to mammals.
Length=177

 Score = 64.3 bits (157),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 0/77 (0%)

Query  2    RSEIGQLTLDHVLKERATLNTNITQAINEAAQDWGVVCLRYEIRDIHAPEGVVAAMHRQV  61
            R  I + TL+ +L  R  L   I  A+ E    +GV  +  +I DI  P  +  A+  + 
Sbjct  101  REIIARYTLEELLSNREELAEEIKNALQEELAKYGVEIIDVQITDIDPPPEIAEAIEAKQ  160

Query  62   TAERSKRAEILESEGQR  78
            TAE+   AEI  +E + 
Sbjct  161  TAEQEAEAEIARAEAEA  177



Lambda      K        H        a         alpha
   0.309    0.122    0.316    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00001619

Length=1043
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462211 pfam07569, Hira, TUP1-like enhancer of split. The Hira...  337     1e-109


>CDD:462211 pfam07569, Hira, TUP1-like enhancer of split.  The Hira proteins 
are found in a range of eukaryotes and are implicated in 
the assembly of repressive chromatin. These proteins also contain 
pfam00400.
Length=221

 Score = 337 bits (867),  Expect = 1e-109, Method: Composition-based stats.
 Identities = 110/234 (47%), Positives = 156/234 (67%), Gaps = 13/234 (6%)

Query  728  GRRLVSALVLEAQPVILECNGPWILCISAVGMCYVWNVKHLSSPHPPISLQPVLDAAIHT  787
            GRRL+  +VL +    LEC+G ++L +++VG+ YVW++K   +  PP+SL P+LD++   
Sbjct  1    GRRLLPPIVLGSPASFLECSGSYLLAVTSVGLLYVWDIKKQKALLPPVSLAPLLDSSSRY  60

Query  788  LGAHPSAAPAITNARINSEGRVVVALSNGEGYSYSPSMYTWQRVSEAWWAVGSQYWNSTE  847
                 + AP IT+A + S G  +V LSNG+GY Y  S+ TW R+S++WWA+GSQYW+ST 
Sbjct  61   SD-KLTRAPTITSASLTSNGVPIVTLSNGDGYLYDKSLETWLRISDSWWALGSQYWDSTG  119

Query  848  APVGNLQSAGPQQDKETTAAVSAGIIPFLERNTTNETLLRGRAYFLQRLIKVLLSREGYE  907
            +   + QS+             AGI+ FLER T  E L +GR   LQRL K LL +EG+E
Sbjct  120  SSRSSSQSSA------------AGILSFLERKTNEELLRKGRGRLLQRLAKTLLMKEGFE  167

Query  908  SFESSVSIAHMENRLAAALSLGAKEEFRLYLSMYAKRLGAEGLKMKVEELLKGL  961
            +FE+ V++AH+ENRLAAAL LG+ +E+R +L MYAKRL  EGLK ++ EL K L
Sbjct  168  NFETVVTLAHLENRLAAALLLGSPDEYRHWLLMYAKRLAEEGLKGRLRELCKEL  221



Lambda      K        H        a         alpha
   0.314    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1340834572


Query= TCONS_00001620

Length=1062
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462211 pfam07569, Hira, TUP1-like enhancer of split. The Hira...  337     2e-109


>CDD:462211 pfam07569, Hira, TUP1-like enhancer of split.  The Hira proteins 
are found in a range of eukaryotes and are implicated in 
the assembly of repressive chromatin. These proteins also contain 
pfam00400.
Length=221

 Score = 337 bits (867),  Expect = 2e-109, Method: Composition-based stats.
 Identities = 110/234 (47%), Positives = 156/234 (67%), Gaps = 13/234 (6%)

Query  747  GRRLVSALVLEAQPVILECNGPWILCISAVGMCYVWNVKHLSSPHPPISLQPVLDAAIHT  806
            GRRL+  +VL +    LEC+G ++L +++VG+ YVW++K   +  PP+SL P+LD++   
Sbjct  1    GRRLLPPIVLGSPASFLECSGSYLLAVTSVGLLYVWDIKKQKALLPPVSLAPLLDSSSRY  60

Query  807  LGAHPSAAPAITNARINSEGRVVVALSNGEGYSYSPSMYTWQRVSEAWWAVGSQYWNSTE  866
                 + AP IT+A + S G  +V LSNG+GY Y  S+ TW R+S++WWA+GSQYW+ST 
Sbjct  61   SD-KLTRAPTITSASLTSNGVPIVTLSNGDGYLYDKSLETWLRISDSWWALGSQYWDSTG  119

Query  867  APVGNLQSAGPQQDKETTAAVSAGIIPFLERNTTNETLLRGRAYFLQRLIKVLLSREGYE  926
            +   + QS+             AGI+ FLER T  E L +GR   LQRL K LL +EG+E
Sbjct  120  SSRSSSQSSA------------AGILSFLERKTNEELLRKGRGRLLQRLAKTLLMKEGFE  167

Query  927  SFESSVSIAHMENRLAAALSLGAKEEFRLYLSMYAKRLGAEGLKMKVEELLKGL  980
            +FE+ V++AH+ENRLAAAL LG+ +E+R +L MYAKRL  EGLK ++ EL K L
Sbjct  168  NFETVVTLAHLENRLAAALLLGSPDEYRHWLLMYAKRLAEEGLKGRLRELCKEL  221



Lambda      K        H        a         alpha
   0.314    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1367736216


Query= TCONS_00007261

Length=1062
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462211 pfam07569, Hira, TUP1-like enhancer of split. The Hira...  337     2e-109


>CDD:462211 pfam07569, Hira, TUP1-like enhancer of split.  The Hira proteins 
are found in a range of eukaryotes and are implicated in 
the assembly of repressive chromatin. These proteins also contain 
pfam00400.
Length=221

 Score = 337 bits (867),  Expect = 2e-109, Method: Composition-based stats.
 Identities = 110/234 (47%), Positives = 156/234 (67%), Gaps = 13/234 (6%)

Query  747  GRRLVSALVLEAQPVILECNGPWILCISAVGMCYVWNVKHLSSPHPPISLQPVLDAAIHT  806
            GRRL+  +VL +    LEC+G ++L +++VG+ YVW++K   +  PP+SL P+LD++   
Sbjct  1    GRRLLPPIVLGSPASFLECSGSYLLAVTSVGLLYVWDIKKQKALLPPVSLAPLLDSSSRY  60

Query  807  LGAHPSAAPAITNARINSEGRVVVALSNGEGYSYSPSMYTWQRVSEAWWAVGSQYWNSTE  866
                 + AP IT+A + S G  +V LSNG+GY Y  S+ TW R+S++WWA+GSQYW+ST 
Sbjct  61   SD-KLTRAPTITSASLTSNGVPIVTLSNGDGYLYDKSLETWLRISDSWWALGSQYWDSTG  119

Query  867  APVGNLQSAGPQQDKETTAAVSAGIIPFLERNTTNETLLRGRAYFLQRLIKVLLSREGYE  926
            +   + QS+             AGI+ FLER T  E L +GR   LQRL K LL +EG+E
Sbjct  120  SSRSSSQSSA------------AGILSFLERKTNEELLRKGRGRLLQRLAKTLLMKEGFE  167

Query  927  SFESSVSIAHMENRLAAALSLGAKEEFRLYLSMYAKRLGAEGLKMKVEELLKGL  980
            +FE+ V++AH+ENRLAAAL LG+ +E+R +L MYAKRL  EGLK ++ EL K L
Sbjct  168  NFETVVTLAHLENRLAAALLLGSPDEYRHWLLMYAKRLAEEGLKGRLRELCKEL  221



Lambda      K        H        a         alpha
   0.314    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1367736216


Query= TCONS_00007264

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461819 pfam06071, YchF-GTPase_C, Protein of unknown function ...  157     2e-48
CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The ...  70.3    2e-15


>CDD:461819 pfam06071, YchF-GTPase_C, Protein of unknown function (DUF933). 
 This domain is found at the C-terminus of the YchF GTP-binding 
protein and is possibly related to the ubiquitin-like 
and MoaD/ThiS superfamilies.
Length=82

 Score = 157 bits (399),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 54/82 (66%), Positives = 62/82 (76%), Gaps = 0/82 (0%)

Query  307  LASFFTTGSDEVRQWTIRKGTKAPAAAGVIHTDFEKTFIQAIVYNYTTLREYGDEAAVKA  366
            L +FFT G  EVR WTIRKGT AP AAGVIHTDFEK FI+A V +Y  L EYG EAA K 
Sbjct  1    LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAAAKE  60

Query  367  AGKIMTKGKDYVVEDGDILLIK  388
            AGK+  +GKDYVV+DGDI+  +
Sbjct  61   AGKLRLEGKDYVVQDGDIIHFR  82


>CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase.  The full-length 
GTPase protein is required for the complete activity of 
the protein of interacting with the 50S ribosome and binding 
of both adenine and guanine nucleotides, with a preference 
for guanine nucleotide.
Length=113

 Score = 70.3 bits (173),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 19/100 (19%)

Query  24   GIVGLANVGKSTLFQAITKSSLGNPANFPYATIDPEEARVIVPDERFDWLCEHYKPKSQV  83
             +VG  NVGKSTL  A+T  +    +++P  T DP E R+ +  ++              
Sbjct  3    ALVGRPNVGKSTLINALTG-AKAIVSDYPGTTRDPNEGRLELKGKQI-------------  48

Query  84   PANLTVYDIAGLTRGASTGAGLGNAFLSHIRAVDAIFQVV  123
                 + D  GL  GAS G GLG AFL+ I A D I  VV
Sbjct  49   ----ILVDTPGLIEGASEGEGLGRAFLAIIEA-DLILFVV  83



Lambda      K        H        a         alpha
   0.317    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00007263

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461819 pfam06071, YchF-GTPase_C, Protein of unknown function ...  154     1e-49


>CDD:461819 pfam06071, YchF-GTPase_C, Protein of unknown function (DUF933). 
 This domain is found at the C-terminus of the YchF GTP-binding 
protein and is possibly related to the ubiquitin-like 
and MoaD/ThiS superfamilies.
Length=82

 Score = 154 bits (392),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 54/82 (66%), Positives = 62/82 (76%), Gaps = 0/82 (0%)

Query  129  LASFFTTGSDEVRQWTIRKGTKAPAAAGVIHTDFEKTFIQAIVYNYTTLREYGDEAAVKA  188
            L +FFT G  EVR WTIRKGT AP AAGVIHTDFEK FI+A V +Y  L EYG EAA K 
Sbjct  1    LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAAAKE  60

Query  189  AGKIMTKGKDYVVEDGDILLIK  210
            AGK+  +GKDYVV+DGDI+  +
Sbjct  61   AGKLRLEGKDYVVQDGDIIHFR  82



Lambda      K        H        a         alpha
   0.317    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00007265

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461819 pfam06071, YchF-GTPase_C, Protein of unknown function ...  157     2e-48
CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The ...  70.3    2e-15


>CDD:461819 pfam06071, YchF-GTPase_C, Protein of unknown function (DUF933). 
 This domain is found at the C-terminus of the YchF GTP-binding 
protein and is possibly related to the ubiquitin-like 
and MoaD/ThiS superfamilies.
Length=82

 Score = 157 bits (399),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 54/82 (66%), Positives = 62/82 (76%), Gaps = 0/82 (0%)

Query  307  LASFFTTGSDEVRQWTIRKGTKAPAAAGVIHTDFEKTFIQAIVYNYTTLREYGDEAAVKA  366
            L +FFT G  EVR WTIRKGT AP AAGVIHTDFEK FI+A V +Y  L EYG EAA K 
Sbjct  1    LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAAAKE  60

Query  367  AGKIMTKGKDYVVEDGDILLIK  388
            AGK+  +GKDYVV+DGDI+  +
Sbjct  61   AGKLRLEGKDYVVQDGDIIHFR  82


>CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase.  The full-length 
GTPase protein is required for the complete activity of 
the protein of interacting with the 50S ribosome and binding 
of both adenine and guanine nucleotides, with a preference 
for guanine nucleotide.
Length=113

 Score = 70.3 bits (173),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 19/100 (19%)

Query  24   GIVGLANVGKSTLFQAITKSSLGNPANFPYATIDPEEARVIVPDERFDWLCEHYKPKSQV  83
             +VG  NVGKSTL  A+T  +    +++P  T DP E R+ +  ++              
Sbjct  3    ALVGRPNVGKSTLINALTG-AKAIVSDYPGTTRDPNEGRLELKGKQI-------------  48

Query  84   PANLTVYDIAGLTRGASTGAGLGNAFLSHIRAVDAIFQVV  123
                 + D  GL  GAS G GLG AFL+ I A D I  VV
Sbjct  49   ----ILVDTPGLIEGASEGEGLGRAFLAIIEA-DLILFVV  83



Lambda      K        H        a         alpha
   0.317    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0781    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00001622

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461819 pfam06071, YchF-GTPase_C, Protein of unknown function ...  157     2e-48
CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The ...  70.3    2e-15


>CDD:461819 pfam06071, YchF-GTPase_C, Protein of unknown function (DUF933). 
 This domain is found at the C-terminus of the YchF GTP-binding 
protein and is possibly related to the ubiquitin-like 
and MoaD/ThiS superfamilies.
Length=82

 Score = 157 bits (399),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 54/82 (66%), Positives = 62/82 (76%), Gaps = 0/82 (0%)

Query  307  LASFFTTGSDEVRQWTIRKGTKAPAAAGVIHTDFEKTFIQAIVYNYTTLREYGDEAAVKA  366
            L +FFT G  EVR WTIRKGT AP AAGVIHTDFEK FI+A V +Y  L EYG EAA K 
Sbjct  1    LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAAAKE  60

Query  367  AGKIMTKGKDYVVEDGDILLIK  388
            AGK+  +GKDYVV+DGDI+  +
Sbjct  61   AGKLRLEGKDYVVQDGDIIHFR  82


>CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase.  The full-length 
GTPase protein is required for the complete activity of 
the protein of interacting with the 50S ribosome and binding 
of both adenine and guanine nucleotides, with a preference 
for guanine nucleotide.
Length=113

 Score = 70.3 bits (173),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 19/100 (19%)

Query  24   GIVGLANVGKSTLFQAITKSSLGNPANFPYATIDPEEARVIVPDERFDWLCEHYKPKSQV  83
             +VG  NVGKSTL  A+T  +    +++P  T DP E R+ +  ++              
Sbjct  3    ALVGRPNVGKSTLINALTG-AKAIVSDYPGTTRDPNEGRLELKGKQI-------------  48

Query  84   PANLTVYDIAGLTRGASTGAGLGNAFLSHIRAVDAIFQVV  123
                 + D  GL  GAS G GLG AFL+ I A D I  VV
Sbjct  49   ----ILVDTPGLIEGASEGEGLGRAFLAIIEA-DLILFVV  83



Lambda      K        H        a         alpha
   0.317    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00001623

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461819 pfam06071, YchF-GTPase_C, Protein of unknown function ...  154     1e-49


>CDD:461819 pfam06071, YchF-GTPase_C, Protein of unknown function (DUF933). 
 This domain is found at the C-terminus of the YchF GTP-binding 
protein and is possibly related to the ubiquitin-like 
and MoaD/ThiS superfamilies.
Length=82

 Score = 154 bits (392),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 54/82 (66%), Positives = 62/82 (76%), Gaps = 0/82 (0%)

Query  129  LASFFTTGSDEVRQWTIRKGTKAPAAAGVIHTDFEKTFIQAIVYNYTTLREYGDEAAVKA  188
            L +FFT G  EVR WTIRKGT AP AAGVIHTDFEK FI+A V +Y  L EYG EAA K 
Sbjct  1    LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAAAKE  60

Query  189  AGKIMTKGKDYVVEDGDILLIK  210
            AGK+  +GKDYVV+DGDI+  +
Sbjct  61   AGKLRLEGKDYVVQDGDIIHFR  82



Lambda      K        H        a         alpha
   0.317    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00001624

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461819 pfam06071, YchF-GTPase_C, Protein of unknown function ...  154     1e-49


>CDD:461819 pfam06071, YchF-GTPase_C, Protein of unknown function (DUF933). 
 This domain is found at the C-terminus of the YchF GTP-binding 
protein and is possibly related to the ubiquitin-like 
and MoaD/ThiS superfamilies.
Length=82

 Score = 154 bits (392),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 54/82 (66%), Positives = 62/82 (76%), Gaps = 0/82 (0%)

Query  129  LASFFTTGSDEVRQWTIRKGTKAPAAAGVIHTDFEKTFIQAIVYNYTTLREYGDEAAVKA  188
            L +FFT G  EVR WTIRKGT AP AAGVIHTDFEK FI+A V +Y  L EYG EAA K 
Sbjct  1    LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAAAKE  60

Query  189  AGKIMTKGKDYVVEDGDILLIK  210
            AGK+  +GKDYVV+DGDI+  +
Sbjct  61   AGKLRLEGKDYVVQDGDIIHFR  82



Lambda      K        H        a         alpha
   0.317    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00007266

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461819 pfam06071, YchF-GTPase_C, Protein of unknown function ...  154     1e-49


>CDD:461819 pfam06071, YchF-GTPase_C, Protein of unknown function (DUF933). 
 This domain is found at the C-terminus of the YchF GTP-binding 
protein and is possibly related to the ubiquitin-like 
and MoaD/ThiS superfamilies.
Length=82

 Score = 154 bits (392),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 54/82 (66%), Positives = 62/82 (76%), Gaps = 0/82 (0%)

Query  127  LASFFTTGSDEVRQWTIRKGTKAPAAAGVIHTDFEKTFIQAIVYNYTTLREYGDEAAVKA  186
            L +FFT G  EVR WTIRKGT AP AAGVIHTDFEK FI+A V +Y  L EYG EAA K 
Sbjct  1    LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAAAKE  60

Query  187  AGKIMTKGKDYVVEDGDILLIK  208
            AGK+  +GKDYVV+DGDI+  +
Sbjct  61   AGKLRLEGKDYVVQDGDIIHFR  82



Lambda      K        H        a         alpha
   0.317    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00001626

Length=182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426278 pfam01472, PUA, PUA domain. The PUA domain named after...  58.7    1e-12


>CDD:426278 pfam01472, PUA, PUA domain.  The PUA domain named after Pseudouridine 
synthase and Archaeosine transglycosylase, was detected 
in archaeal and eukaryotic pseudouridine synthases, archaeal 
archaeosine synthases, a family of predicted ATPases that 
may be involved in RNA modification, a family of predicted 
archaeal and bacterial rRNA methylases. Additionally, the 
PUA domain was detected in a family of eukaryotic proteins 
that also contain a domain homologous to the translation initiation 
factor eIF1/SUI1; these proteins may comprise a novel 
type of translation factors. Unexpectedly, the PUA domain 
was detected also in bacterial and yeast glutamate kinases; 
this is compatible with the demonstrated role of these enzymes 
in the regulation of the expression of other genes. It is 
predicted that the PUA domain is an RNA binding domain.
Length=74

 Score = 58.7 bits (143),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 23/75 (31%), Positives = 36/75 (48%), Gaps = 8/75 (11%)

Query  91   PTVQIDRGAIRFVLSGAALMAPGLTSPGGRLPDAEHALEKGQVVAVMAEGKEHACMVGPL  150
              V +D GA++ +L+GA+L+APG+    G          KG  V V+ E  E    VG  
Sbjct  1    GRVVVDDGAVKAILNGASLLAPGVVRVDGD-------FRKGDEVVVVTEKGELVA-VGLA  52

Query  151  KVGTEEMKEKKKGVV  165
               +EE+ + + G  
Sbjct  53   NYSSEELAKIEGGKA  67



Lambda      K        H        a         alpha
   0.315    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00001627

Length=1110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  95.7    5e-24
CDD:433530 pfam13857, Ank_5, Ankyrin repeats (many copies)            59.7    6e-12


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 95.7 bits (239),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 34/110 (31%), Positives = 58/110 (53%), Gaps = 11/110 (10%)

Query  184  LGRAVEEFRKMTDAKCPHDMLNTLLETVKVLSYPGTYDNANLQASEKQIAPVTVNADILV  243
              +A +E +K+ +AK P + L  LL T K++           +A  K     ++ AD L+
Sbjct  1    WEQAQQELKKLNEAKSPREKLKCLLRTCKLI----------TEALSKSNRDESLGADDLL  50

Query  244  SLLLIVVIRSQVRHLQARLLYMQHFIYIDDVDSGEMGYALSTFEAVLTYL  293
             +L+ V+IR+   +L + L ++  F    D+ SGE GY L+T EA L ++
Sbjct  51   PILIYVLIRANPPNLYSNLQFISEFRD-PDLLSGEEGYYLTTLEAALEFI  99


>CDD:433530 pfam13857, Ank_5, Ankyrin repeats (many copies).  
Length=56

 Score = 59.7 bits (145),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 1/57 (2%)

Query  636  ILQESDCDPNATNEKKFTPLMMASKYGRVDQVRILFLDPRVDVHLKEARGLTAVELA  692
            +L+    D N  + + +TPL +A+KYG ++ VR+L L   VD++LK+  GLTA++LA
Sbjct  1    LLEHGPIDLNRLDGEGYTPLHVAAKYGALEIVRVL-LAYGVDLNLKDEEGLTALDLA  56



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1414389094


Query= TCONS_00007267

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465168 pfam16546, SGTA_dimer, Homodimerization domain of SGTA...  108     2e-30


>CDD:465168 pfam16546, SGTA_dimer, Homodimerization domain of SGTA.  SGTA_dimer 
is a short N-terminal domain at the start of SGTA or 
small glutamine-rich tetratricopeptide repeat-containing proteins. 
It is the homodimerization domain of the SGTA, a heat-shock 
protein (HSP) co-chaperone involved in the targeting 
of tail-anchor membrane proteins to the endoplasmic reticulum. 
This N-terminal homodimerization domain mediates the association 
with a single copy of Get4 or Get5 proteins, providing 
a link to the rest of the GET pathway.
Length=64

 Score = 108 bits (272),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 44/64 (69%), Positives = 52/64 (81%), Gaps = 0/64 (0%)

Query  8   KRLALAIIDFLNSSLKDGTLTADDAESIEIAQSCIADTFKVDPSDEAAVKDALGGQSLAS  67
           KRLAL+IIDFL++SL DGTL+ DDAES+E+A  CIA+ F+VDP DEAAV  A GGQSL  
Sbjct  1   KRLALSIIDFLSTSLSDGTLSEDDAESLEVAIQCIAEAFEVDPDDEAAVVKAFGGQSLLE  60

Query  68  IFSV  71
           IF V
Sbjct  61  IFEV  64



Lambda      K        H        a         alpha
   0.308    0.125    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00007269

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465168 pfam16546, SGTA_dimer, Homodimerization domain of SGTA...  109     6e-31


>CDD:465168 pfam16546, SGTA_dimer, Homodimerization domain of SGTA.  SGTA_dimer 
is a short N-terminal domain at the start of SGTA or 
small glutamine-rich tetratricopeptide repeat-containing proteins. 
It is the homodimerization domain of the SGTA, a heat-shock 
protein (HSP) co-chaperone involved in the targeting 
of tail-anchor membrane proteins to the endoplasmic reticulum. 
This N-terminal homodimerization domain mediates the association 
with a single copy of Get4 or Get5 proteins, providing 
a link to the rest of the GET pathway.
Length=64

 Score = 109 bits (276),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 44/64 (69%), Positives = 52/64 (81%), Gaps = 0/64 (0%)

Query  8   KRLALAIIDFLNSSLKDGTLTADDAESIEIAQSCIADTFKVDPSDEAAVKDALGGQSLAS  67
           KRLAL+IIDFL++SL DGTL+ DDAES+E+A  CIA+ F+VDP DEAAV  A GGQSL  
Sbjct  1   KRLALSIIDFLSTSLSDGTLSEDDAESLEVAIQCIAEAFEVDPDDEAAVVKAFGGQSLLE  60

Query  68  IFSV  71
           IF V
Sbjct  61  IFEV  64



Lambda      K        H        a         alpha
   0.308    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00001628

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465168 pfam16546, SGTA_dimer, Homodimerization domain of SGTA...  109     6e-31


>CDD:465168 pfam16546, SGTA_dimer, Homodimerization domain of SGTA.  SGTA_dimer 
is a short N-terminal domain at the start of SGTA or 
small glutamine-rich tetratricopeptide repeat-containing proteins. 
It is the homodimerization domain of the SGTA, a heat-shock 
protein (HSP) co-chaperone involved in the targeting 
of tail-anchor membrane proteins to the endoplasmic reticulum. 
This N-terminal homodimerization domain mediates the association 
with a single copy of Get4 or Get5 proteins, providing 
a link to the rest of the GET pathway.
Length=64

 Score = 109 bits (276),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 44/64 (69%), Positives = 52/64 (81%), Gaps = 0/64 (0%)

Query  8   KRLALAIIDFLNSSLKDGTLTADDAESIEIAQSCIADTFKVDPSDEAAVKDALGGQSLAS  67
           KRLAL+IIDFL++SL DGTL+ DDAES+E+A  CIA+ F+VDP DEAAV  A GGQSL  
Sbjct  1   KRLALSIIDFLSTSLSDGTLSEDDAESLEVAIQCIAEAFEVDPDDEAAVVKAFGGQSLLE  60

Query  68  IFSV  71
           IF V
Sbjct  61  IFEV  64



Lambda      K        H        a         alpha
   0.308    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00001629

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00001630

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465168 pfam16546, SGTA_dimer, Homodimerization domain of SGTA...  108     2e-30


>CDD:465168 pfam16546, SGTA_dimer, Homodimerization domain of SGTA.  SGTA_dimer 
is a short N-terminal domain at the start of SGTA or 
small glutamine-rich tetratricopeptide repeat-containing proteins. 
It is the homodimerization domain of the SGTA, a heat-shock 
protein (HSP) co-chaperone involved in the targeting 
of tail-anchor membrane proteins to the endoplasmic reticulum. 
This N-terminal homodimerization domain mediates the association 
with a single copy of Get4 or Get5 proteins, providing 
a link to the rest of the GET pathway.
Length=64

 Score = 108 bits (273),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 44/64 (69%), Positives = 52/64 (81%), Gaps = 0/64 (0%)

Query  15  KRLALAIIDFLNSSLKDGTLTADDAESIEIAQSCIADTFKVDPSDEAAVKDALGGQSLAS  74
           KRLAL+IIDFL++SL DGTL+ DDAES+E+A  CIA+ F+VDP DEAAV  A GGQSL  
Sbjct  1   KRLALSIIDFLSTSLSDGTLSEDDAESLEVAIQCIAEAFEVDPDDEAAVVKAFGGQSLLE  60

Query  75  IFSV  78
           IF V
Sbjct  61  IFEV  64



Lambda      K        H        a         alpha
   0.308    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00007270

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465168 pfam16546, SGTA_dimer, Homodimerization domain of SGTA...  110     2e-31


>CDD:465168 pfam16546, SGTA_dimer, Homodimerization domain of SGTA.  SGTA_dimer 
is a short N-terminal domain at the start of SGTA or 
small glutamine-rich tetratricopeptide repeat-containing proteins. 
It is the homodimerization domain of the SGTA, a heat-shock 
protein (HSP) co-chaperone involved in the targeting 
of tail-anchor membrane proteins to the endoplasmic reticulum. 
This N-terminal homodimerization domain mediates the association 
with a single copy of Get4 or Get5 proteins, providing 
a link to the rest of the GET pathway.
Length=64

 Score = 110 bits (278),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 44/64 (69%), Positives = 52/64 (81%), Gaps = 0/64 (0%)

Query  15  KRLALAIIDFLNSSLKDGTLTADDAESIEIAQSCIADTFKVDPSDEAAVKDALGGQSLAS  74
           KRLAL+IIDFL++SL DGTL+ DDAES+E+A  CIA+ F+VDP DEAAV  A GGQSL  
Sbjct  1   KRLALSIIDFLSTSLSDGTLSEDDAESLEVAIQCIAEAFEVDPDDEAAVVKAFGGQSLLE  60

Query  75  IFSV  78
           IF V
Sbjct  61  IFEV  64



Lambda      K        H        a         alpha
   0.308    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00007271

Length=1110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  95.7    5e-24
CDD:433530 pfam13857, Ank_5, Ankyrin repeats (many copies)            59.7    6e-12


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 95.7 bits (239),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 34/110 (31%), Positives = 58/110 (53%), Gaps = 11/110 (10%)

Query  184  LGRAVEEFRKMTDAKCPHDMLNTLLETVKVLSYPGTYDNANLQASEKQIAPVTVNADILV  243
              +A +E +K+ +AK P + L  LL T K++           +A  K     ++ AD L+
Sbjct  1    WEQAQQELKKLNEAKSPREKLKCLLRTCKLI----------TEALSKSNRDESLGADDLL  50

Query  244  SLLLIVVIRSQVRHLQARLLYMQHFIYIDDVDSGEMGYALSTFEAVLTYL  293
             +L+ V+IR+   +L + L ++  F    D+ SGE GY L+T EA L ++
Sbjct  51   PILIYVLIRANPPNLYSNLQFISEFRD-PDLLSGEEGYYLTTLEAALEFI  99


>CDD:433530 pfam13857, Ank_5, Ankyrin repeats (many copies).  
Length=56

 Score = 59.7 bits (145),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 1/57 (2%)

Query  636  ILQESDCDPNATNEKKFTPLMMASKYGRVDQVRILFLDPRVDVHLKEARGLTAVELA  692
            +L+    D N  + + +TPL +A+KYG ++ VR+L L   VD++LK+  GLTA++LA
Sbjct  1    LLEHGPIDLNRLDGEGYTPLHVAAKYGALEIVRVL-LAYGVDLNLKDEEGLTALDLA  56



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1414389094


Query= TCONS_00001632

Length=1110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  95.7    5e-24
CDD:433530 pfam13857, Ank_5, Ankyrin repeats (many copies)            59.7    6e-12


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 95.7 bits (239),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 34/110 (31%), Positives = 58/110 (53%), Gaps = 11/110 (10%)

Query  184  LGRAVEEFRKMTDAKCPHDMLNTLLETVKVLSYPGTYDNANLQASEKQIAPVTVNADILV  243
              +A +E +K+ +AK P + L  LL T K++           +A  K     ++ AD L+
Sbjct  1    WEQAQQELKKLNEAKSPREKLKCLLRTCKLI----------TEALSKSNRDESLGADDLL  50

Query  244  SLLLIVVIRSQVRHLQARLLYMQHFIYIDDVDSGEMGYALSTFEAVLTYL  293
             +L+ V+IR+   +L + L ++  F    D+ SGE GY L+T EA L ++
Sbjct  51   PILIYVLIRANPPNLYSNLQFISEFRD-PDLLSGEEGYYLTTLEAALEFI  99


>CDD:433530 pfam13857, Ank_5, Ankyrin repeats (many copies).  
Length=56

 Score = 59.7 bits (145),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 1/57 (2%)

Query  636  ILQESDCDPNATNEKKFTPLMMASKYGRVDQVRILFLDPRVDVHLKEARGLTAVELA  692
            +L+    D N  + + +TPL +A+KYG ++ VR+L L   VD++LK+  GLTA++LA
Sbjct  1    LLEHGPIDLNRLDGEGYTPLHVAAKYGALEIVRVL-LAYGVDLNLKDEEGLTALDLA  56



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1414389094


Query= TCONS_00001633

Length=1308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  95.7    7e-24
CDD:433530 pfam13857, Ank_5, Ankyrin repeats (many copies)            60.1    5e-12


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 95.7 bits (239),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 34/110 (31%), Positives = 58/110 (53%), Gaps = 11/110 (10%)

Query  382  LGRAVEEFRKMTDAKCPHDMLNTLLETVKVLSYPGTYDNANLQASEKQIAPVTVNADILV  441
              +A +E +K+ +AK P + L  LL T K++           +A  K     ++ AD L+
Sbjct  1    WEQAQQELKKLNEAKSPREKLKCLLRTCKLI----------TEALSKSNRDESLGADDLL  50

Query  442  SLLLIVVIRSQVRHLQARLLYMQHFIYIDDVDSGEMGYALSTFEAVLTYL  491
             +L+ V+IR+   +L + L ++  F    D+ SGE GY L+T EA L ++
Sbjct  51   PILIYVLIRANPPNLYSNLQFISEFRD-PDLLSGEEGYYLTTLEAALEFI  99


>CDD:433530 pfam13857, Ank_5, Ankyrin repeats (many copies).  
Length=56

 Score = 60.1 bits (146),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 1/57 (2%)

Query  834  ILQESDCDPNATNEKKFTPLMMASKYGRVDQVRILFLDPRVDVHLKEARGLTAVELA  890
            +L+    D N  + + +TPL +A+KYG ++ VR+L L   VD++LK+  GLTA++LA
Sbjct  1    LLEHGPIDLNRLDGEGYTPLHVAAKYGALEIVRVL-LAYGVDLNLKDEEGLTALDLA  56



Lambda      K        H        a         alpha
   0.316    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1665686000


Query= TCONS_00001635

Length=1308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  95.7    7e-24
CDD:433530 pfam13857, Ank_5, Ankyrin repeats (many copies)            60.1    5e-12


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 95.7 bits (239),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 34/110 (31%), Positives = 58/110 (53%), Gaps = 11/110 (10%)

Query  382  LGRAVEEFRKMTDAKCPHDMLNTLLETVKVLSYPGTYDNANLQASEKQIAPVTVNADILV  441
              +A +E +K+ +AK P + L  LL T K++           +A  K     ++ AD L+
Sbjct  1    WEQAQQELKKLNEAKSPREKLKCLLRTCKLI----------TEALSKSNRDESLGADDLL  50

Query  442  SLLLIVVIRSQVRHLQARLLYMQHFIYIDDVDSGEMGYALSTFEAVLTYL  491
             +L+ V+IR+   +L + L ++  F    D+ SGE GY L+T EA L ++
Sbjct  51   PILIYVLIRANPPNLYSNLQFISEFRD-PDLLSGEEGYYLTTLEAALEFI  99


>CDD:433530 pfam13857, Ank_5, Ankyrin repeats (many copies).  
Length=56

 Score = 60.1 bits (146),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 1/57 (2%)

Query  834  ILQESDCDPNATNEKKFTPLMMASKYGRVDQVRILFLDPRVDVHLKEARGLTAVELA  890
            +L+    D N  + + +TPL +A+KYG ++ VR+L L   VD++LK+  GLTA++LA
Sbjct  1    LLEHGPIDLNRLDGEGYTPLHVAAKYGALEIVRVL-LAYGVDLNLKDEEGLTALDLA  56



Lambda      K        H        a         alpha
   0.316    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1665686000


Query= TCONS_00001634

Length=1308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  95.7    7e-24
CDD:433530 pfam13857, Ank_5, Ankyrin repeats (many copies)            60.1    5e-12


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 95.7 bits (239),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 34/110 (31%), Positives = 58/110 (53%), Gaps = 11/110 (10%)

Query  382  LGRAVEEFRKMTDAKCPHDMLNTLLETVKVLSYPGTYDNANLQASEKQIAPVTVNADILV  441
              +A +E +K+ +AK P + L  LL T K++           +A  K     ++ AD L+
Sbjct  1    WEQAQQELKKLNEAKSPREKLKCLLRTCKLI----------TEALSKSNRDESLGADDLL  50

Query  442  SLLLIVVIRSQVRHLQARLLYMQHFIYIDDVDSGEMGYALSTFEAVLTYL  491
             +L+ V+IR+   +L + L ++  F    D+ SGE GY L+T EA L ++
Sbjct  51   PILIYVLIRANPPNLYSNLQFISEFRD-PDLLSGEEGYYLTTLEAALEFI  99


>CDD:433530 pfam13857, Ank_5, Ankyrin repeats (many copies).  
Length=56

 Score = 60.1 bits (146),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 1/57 (2%)

Query  834  ILQESDCDPNATNEKKFTPLMMASKYGRVDQVRILFLDPRVDVHLKEARGLTAVELA  890
            +L+    D N  + + +TPL +A+KYG ++ VR+L L   VD++LK+  GLTA++LA
Sbjct  1    LLEHGPIDLNRLDGEGYTPLHVAAKYGALEIVRVL-LAYGVDLNLKDEEGLTALDLA  56



Lambda      K        H        a         alpha
   0.316    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1665686000


Query= TCONS_00001636

Length=1110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  95.7    5e-24
CDD:433530 pfam13857, Ank_5, Ankyrin repeats (many copies)            59.7    6e-12


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 95.7 bits (239),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 34/110 (31%), Positives = 58/110 (53%), Gaps = 11/110 (10%)

Query  184  LGRAVEEFRKMTDAKCPHDMLNTLLETVKVLSYPGTYDNANLQASEKQIAPVTVNADILV  243
              +A +E +K+ +AK P + L  LL T K++           +A  K     ++ AD L+
Sbjct  1    WEQAQQELKKLNEAKSPREKLKCLLRTCKLI----------TEALSKSNRDESLGADDLL  50

Query  244  SLLLIVVIRSQVRHLQARLLYMQHFIYIDDVDSGEMGYALSTFEAVLTYL  293
             +L+ V+IR+   +L + L ++  F    D+ SGE GY L+T EA L ++
Sbjct  51   PILIYVLIRANPPNLYSNLQFISEFRD-PDLLSGEEGYYLTTLEAALEFI  99


>CDD:433530 pfam13857, Ank_5, Ankyrin repeats (many copies).  
Length=56

 Score = 59.7 bits (145),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 1/57 (2%)

Query  636  ILQESDCDPNATNEKKFTPLMMASKYGRVDQVRILFLDPRVDVHLKEARGLTAVELA  692
            +L+    D N  + + +TPL +A+KYG ++ VR+L L   VD++LK+  GLTA++LA
Sbjct  1    LLEHGPIDLNRLDGEGYTPLHVAAKYGALEIVRVL-LAYGVDLNLKDEEGLTALDLA  56



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0712    0.140     1.90     42.6     43.6 

Effective search space used: 1414389094


Query= TCONS_00001637

Length=1110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  95.7    5e-24
CDD:433530 pfam13857, Ank_5, Ankyrin repeats (many copies)            59.7    6e-12


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 95.7 bits (239),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 34/110 (31%), Positives = 58/110 (53%), Gaps = 11/110 (10%)

Query  184  LGRAVEEFRKMTDAKCPHDMLNTLLETVKVLSYPGTYDNANLQASEKQIAPVTVNADILV  243
              +A +E +K+ +AK P + L  LL T K++           +A  K     ++ AD L+
Sbjct  1    WEQAQQELKKLNEAKSPREKLKCLLRTCKLI----------TEALSKSNRDESLGADDLL  50

Query  244  SLLLIVVIRSQVRHLQARLLYMQHFIYIDDVDSGEMGYALSTFEAVLTYL  293
             +L+ V+IR+   +L + L ++  F    D+ SGE GY L+T EA L ++
Sbjct  51   PILIYVLIRANPPNLYSNLQFISEFRD-PDLLSGEEGYYLTTLEAALEFI  99


>CDD:433530 pfam13857, Ank_5, Ankyrin repeats (many copies).  
Length=56

 Score = 59.7 bits (145),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 1/57 (2%)

Query  636  ILQESDCDPNATNEKKFTPLMMASKYGRVDQVRILFLDPRVDVHLKEARGLTAVELA  692
            +L+    D N  + + +TPL +A+KYG ++ VR+L L   VD++LK+  GLTA++LA
Sbjct  1    LLEHGPIDLNRLDGEGYTPLHVAAKYGALEIVRVL-LAYGVDLNLKDEEGLTALDLA  56



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1414389094


Query= TCONS_00001640

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00001639

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00001641

Length=220
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462053 pfam06964, Alpha-L-AF_C, Alpha-L-arabinofuranosidase C...  133     1e-39


>CDD:462053 pfam06964, Alpha-L-AF_C, Alpha-L-arabinofuranosidase C-terminal 
domain.  This family represents the C-terminus (approximately 
200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase 
(EC:3.2.1.55). This catalyzes the hydrolysis 
of nonreducing terminal alpha-L-arabinofuranosidic linkages 
in L-arabinose-containing polysaccharides.
Length=192

 Score = 133 bits (336),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 41/114 (36%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query  55   DEWNVWDPLRAEGSKG-AEESYTLSDALAVAIWLNVFVRKSKDVGMACIAQSVNVISPLM  113
            DEWNVW  +    + G  E+  TL DAL  A +LN F R +  V MA  AQ VNV++P+M
Sbjct  1    DEWNVWYDVEPGTAPGFLEQQNTLRDALVEAAFLNGFERNADRVKMANYAQLVNVLAPIM  60

Query  114  TTKDG-IIKQTIWWPLYLFSKYMRGWTINAHVSCGAYE--GETSPK-WIRAVKD  163
            TT  G  +    ++   LFS +  G  +   V    Y+  G   P     A +D
Sbjct  61   TTDGGKAVLTPTYYVFKLFSNHQGGTVLPVTVESPTYDTGGFGEPALDASASRD  114



Lambda      K        H        a         alpha
   0.321    0.135    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00001642

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00007272

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462053 pfam06964, Alpha-L-AF_C, Alpha-L-arabinofuranosidase C...  139     2e-42


>CDD:462053 pfam06964, Alpha-L-AF_C, Alpha-L-arabinofuranosidase C-terminal 
domain.  This family represents the C-terminus (approximately 
200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase 
(EC:3.2.1.55). This catalyzes the hydrolysis 
of nonreducing terminal alpha-L-arabinofuranosidic linkages 
in L-arabinose-containing polysaccharides.
Length=192

 Score = 139 bits (352),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 43/124 (35%), Positives = 59/124 (48%), Gaps = 10/124 (8%)

Query  55   DEWNVWDPLRAEGSKG-AEESYTLSDALAVAIWLNVFVRKSKDVGMACIAQSVNVISPLM  113
            DEWNVW  +    + G  E+  TL DAL  A +LN F R +  V MA  AQ VNV++P+M
Sbjct  1    DEWNVWYDVEPGTAPGFLEQQNTLRDALVEAAFLNGFERNADRVKMANYAQLVNVLAPIM  60

Query  114  TTKDG-IIKQTIWWPLYLFSKYMRGWTINAHVSCGAYEGETSPKWIRAVKDTPWLDVSAT  172
            TT  G  +    ++   LFS +  G  +   V    Y+              P LD SA+
Sbjct  61   TTDGGKAVLTPTYYVFKLFSNHQGGTVLPVTVESPTYD--------TGGFGEPALDASAS  112

Query  173  LGED  176
              E+
Sbjct  113  RDEE  116



Lambda      K        H        a         alpha
   0.318    0.132    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00007273

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00001643

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         178     2e-53
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            60.5    4e-11


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 178 bits (453),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 102/281 (36%), Positives = 154/281 (55%), Gaps = 20/281 (7%)

Query  12   VGVFASLGSFLFGYDLGVIAEVIACQSFDAKF---------AADDTQTGLVVSLFTAGAF  62
            V + A+LG FLFGYD GVI   +    F   F         AA    +GL+VS+F+ G F
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  63   FGAGFAGPAGDYLGRRWTIAIGCLVFCLGGGLQ---TGAQNISYLYSGRFFAGLGVGFLT  119
             G+ FAG  GD  GR+ ++ I  ++F +G  LQ    G  ++  L  GR   G+GVG  +
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  120  MIVPLYQAEICHPKIRGRVTALQQFMLGVGALCAAWISYGTYVGFDPTNNAQWQVPLGLQ  179
            ++ P+Y +EI   K+RG + +L Q  +  G L A     G        N+  W++PLGLQ
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTS---NSDGWRIPLGLQ  177

Query  180  IAPAVILGLLIMFFPESPRWLIDHGYNEKGLATLAKLHAHGNEDDAWVRAEYNQIQESIV  239
            + PA++L + ++F PESPRWL++ G  E+    LAKL       D  V  E ++I++S+ 
Sbjct  178  LVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKL---RGVPD--VDRELDEIKDSLE  232

Query  240  YEHEHEAKSYSELFTNRSSFRRLFLCCALQASVQMTGVSAI  280
               E E  S+ ELF+ ++  +RL +   LQ   Q+TG++AI
Sbjct  233  AGQEAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAI  273


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 60.5 bits (147),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 43/182 (24%), Positives = 68/182 (37%), Gaps = 7/182 (4%)

Query  17   SLGSFLFGYDLGVIAEVIACQSFDAKFAADDTQTGLVVSLFTAGAFFGAGFAGPAGDYLG  76
             L +FL      ++   +             T+ GL+++LF+ G       AG   D  G
Sbjct  2    FLAAFLAALGRSLLGPALP-LLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  77   RRWTIAIGCLVFCLGGGLQTGAQNISYLYSGRFFAGLGVGFLTMIVPLYQAEICHPKIRG  136
            RR  + IG L+F LG  L   A ++  L   R   GLG G L        A+   P+ RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  137  RVTALQQFMLGVGALCAAWISYGTYVGFDPTNNAQWQVPLGLQIAPAVILGLLIMFFPES  196
            R   L     G+GA     +       F       W+    +    +++  +L++     
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFG------WRAAFLILAILSLLAAVLLLLPRPP  174

Query  197  PR  198
            P 
Sbjct  175  PE  176



Lambda      K        H        a         alpha
   0.326    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00001644

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         284     2e-91
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            73.2    1e-14


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 284 bits (729),  Expect = 2e-91, Method: Composition-based stats.
 Identities = 154/464 (33%), Positives = 243/464 (52%), Gaps = 25/464 (5%)

Query  12   VGVFASLGSFLFGYDLGVIAEVIACQSFDAKF---------AADDTQTGLVVSLFTAGAF  62
            V + A+LG FLFGYD GVI   +    F   F         AA    +GL+VS+F+ G F
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  63   FGAGFAGPAGDYLGRRWTIAIGCLVFCLGGGLQ---TGAQNISYLYSGRFFAGLGVGFLT  119
             G+ FAG  GD  GR+ ++ I  ++F +G  LQ    G  ++  L  GR   G+GVG  +
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  120  MIVPLYQAEICHPKIRGRVTALQQFMLGVGALCAAWISYGTYVGFDPTNNAQWQVPLGLQ  179
            ++ P+Y +EI   K+RG + +L Q  +  G L A     G        N+  W++PLGLQ
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTS---NSDGWRIPLGLQ  177

Query  180  IAPAVILGLLIMFFPESPRWLIDHGYNEKGLATLAKLHAHGNEDDAWVRAEYNQIQESIV  239
            + PA++L + ++F PESPRWL++ G  E+    LAKL       D  V  E ++I++S+ 
Sbjct  178  LVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKL---RGVPD--VDRELDEIKDSLE  232

Query  240  YEHEHEAKSYSELFTNRSSFRRLFLCCALQASVQMTGVSAIQYYSVTIYNQIGIAGDETL  299
               E E  S+ ELF+ ++  +RL +   LQ   Q+TG++AI YYS TI+  +G+   ++ 
Sbjct  233  AGQEAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGL--SDSF  290

Query  300  KYQAINSIIALVAECLCMAFIDRFGRRWTLIGGNLGNMVTFIIACILLARFPPEANNTGA  359
                I  ++  V   + +  +DRFGRR  L+ G  G  + F+I  I+       + +  A
Sbjct  291  LVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVA--LLGVSKSDWA  348

Query  360  HWGFIIMTWLYNFSFSCTCGPLSWIIPAEVFDTRTRSKGVSIATMTSFAFNTMIGQVTPI  419
                I+   L+   F+   GP+ W+I +E+F    RSK +++AT  ++  N +IG + PI
Sbjct  349  GIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPI  408

Query  420  AMTNVRYRYYYL-FIICNFTNALFFWLLLPETKKLPLEEMNYLF  462
                +   Y +  F        +F +  +PETK   LEE++ LF
Sbjct  409  ITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 73.2 bits (180),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 65/391 (17%), Positives = 118/391 (30%), Gaps = 55/391 (14%)

Query  17   SLGSFLFGYDLGVIAEVIACQSFDAKFAADDTQTGLVVSLFTAGAFFGAGFAGPAGDYLG  76
             L +FL      ++   +             T+ GL+++LF+ G       AG   D  G
Sbjct  2    FLAAFLAALGRSLLGPALP-LLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  77   RRWTIAIGCLVFCLGGGLQTGAQNISYLYSGRFFAGLGVGFLTMIVPLYQAEICHPKIRG  136
            RR  + IG L+F LG  L   A ++  L   R   GLG G L        A+   P+ RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  137  RVTALQQFMLGVGALCAAWISYGTYVGFDPTNNAQWQVPLGLQIAPAVILGLLIMFFPES  196
            R   L     G+GA     +       F       W+    + +A   +L  +++  P  
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFG------WRAAFLI-LAILSLLAAVLLLLPRP  173

Query  197  PRWLIDHGYNEKGLATLAKLHAHGNEDDAWVRAEYNQIQESIVYEHEHEAKSYSELFTNR  256
            P                                               E    S +   +
Sbjct  174  PP--------------------------------------ESKRPKPAEEARLSLIVAWK  195

Query  257  SSFRRLFLCCALQASVQMTGVSAIQYYSVTIYNQIGIAGDETLKYQAINSIIALVAECLC  316
            +  R   L   L   +       +  Y       +G++         +  ++  +   L 
Sbjct  196  ALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLL  255

Query  317  MAFIDRFGRRWTLIGGNLGNMVTFIIACILLARFPPEANNTGAHWGFIIMTWLYNFSFSC  376
                DR GRR  L+      ++  I+A + L       ++       +++ + +   F  
Sbjct  256  GRLSDRLGRRRRLLLA----LLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVF--  309

Query  377  TCGPLSWIIPAEVFDTRTRSKGVSIATMTSF  407
               P    + +++     R     +      
Sbjct  310  ---PALNALVSDLAPKEERGTASGLYNTAGS  337



Lambda      K        H        a         alpha
   0.326    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 620767060


Query= TCONS_00001645

Length=545
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         263     6e-83
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.1    1e-13


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 263 bits (675),  Expect = 6e-83, Method: Composition-based stats.
 Identities = 125/394 (32%), Positives = 206/394 (52%), Gaps = 16/394 (4%)

Query  117  DYLGRRWTIAIGCLVFCLGGGLQ---TGAQNISYLYSGRFFAGLGVGFLTMIVPLYQAEI  173
            D  GR+ ++ I  ++F +G  LQ    G  ++  L  GR   G+GVG  +++ P+Y +EI
Sbjct  71   DRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEI  130

Query  174  CHPKIRGRVTALQQFMLGVGALCAAWISYGTYVGFDPTNNAQWQVPLGLQIAPAVILGLL  233
               K+RG + +L Q  +  G L A     G        N+  W++PLGLQ+ PA++L + 
Sbjct  131  APKKLRGALGSLYQLAITFGILLAYIFGLGLNKTS---NSDGWRIPLGLQLVPALLLIIG  187

Query  234  IMFFPESPRWLIDHGYNEKGLATLAKLHAHGNEDDAWVRAEYNQIQESIVYEHEHEAKSY  293
            ++F PESPRWL++ G  E+    LAKL       D  V  E ++I++S+    E E  S+
Sbjct  188  LLFLPESPRWLVEKGRLEEAREVLAKL---RGVPD--VDRELDEIKDSLEAGQEAEKASW  242

Query  294  SELFTNRSSFRRLFLCCALQASVQMTGVSAIQYYSVTIYNQIGIAGDETLKYQAINSIIA  353
             ELF+ ++  +RL +   LQ   Q+TG++AI YYS TI+  +G+   ++     I  ++ 
Sbjct  243  KELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGL--SDSFLVTIIVGVVN  300

Query  354  LVAECLCMAFIDRFGRRWTLIGGNLGNMVTFIIACILLARFPPEANNTGAHWGFIIMTWL  413
             V   + +  +DRFGRR  L+ G  G  + F+I  I+       + +  A    I+   L
Sbjct  301  FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVA--LLGVSKSDWAGIVAIVFIAL  358

Query  414  YNFSFSCTCGPLSWIIPAEVFDTRTRSKGVSIATMTSFAFNTMIGQVTPIAMTNVRYRYY  473
            +   F+   GP+ W+I +E+F    RSK +++AT  ++  N +IG + PI    +   Y 
Sbjct  359  FIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYT  418

Query  474  YL-FIICNFTNALFFWLLLPETKKLPLEEMNYLF  506
            +  F        +F +  +PETK   LEE++ LF
Sbjct  419  FFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.1 bits (172),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 109/357 (31%), Gaps = 54/357 (15%)

Query  95   GLVVSLFTAGAFFGAGFAGPAGDYLGRRWTIAIGCLVFCLGGGLQTGAQNISYLYSGRFF  154
            GL+++LF+ G       AG   D  GRR  + IG L+F LG  L   A ++  L   R  
Sbjct  35   GLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL  94

Query  155  AGLGVGFLTMIVPLYQAEICHPKIRGRVTALQQFMLGVGALCAAWISYGTYVGFDPTNNA  214
             GLG G L        A+   P+ RGR   L     G+GA     +       F      
Sbjct  95   QGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFG-----  149

Query  215  QWQVPLGLQIAPAVILGLLIMFFPESPRWLIDHGYNEKGLATLAKLHAHGNEDDAWVRAE  274
             W+    + +A   +L  +++  P  P                                 
Sbjct  150  -WRAAFLI-LAILSLLAAVLLLLPRPPP--------------------------------  175

Query  275  YNQIQESIVYEHEHEAKSYSELFTNRSSFRRLFLCCALQASVQMTGVSAIQYYSVTIYNQ  334
                          E    S +   ++  R   L   L   +       +  Y       
Sbjct  176  ------ESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEV  229

Query  335  IGIAGDETLKYQAINSIIALVAECLCMAFIDRFGRRWTLIGGNLGNMVTFIIACILLARF  394
            +G++         +  ++  +   L     DR GRR  L+      ++  I+A + L   
Sbjct  230  LGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLA----LLLLILAALGLLLL  285

Query  395  PPEANNTGAHWGFIIMTWLYNFSFSCTCGPLSWIIPAEVFDTRTRSKGVSIATMTSF  451
                ++       +++ + +   F     P    + +++     R     +      
Sbjct  286  SLTLSSLWLLLALLLLGFGFGLVF-----PALNALVSDLAPKEERGTASGLYNTAGS  337



Lambda      K        H        a         alpha
   0.326    0.139    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 687385964


Query= TCONS_00001646

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  92.4    2e-23


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 92.4 bits (230),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 60/110 (55%), Gaps = 18/110 (16%)

Query  73   IGLGTWQ-------SKPNEVREAVKAALLKGYRHIDTALAYG---NEAEVGQGIRDSGIP  122
            IGLGTWQ           E  EA++AAL  G   IDTA  YG   +E  +G+ ++D  + 
Sbjct  1    IGLGTWQLGGGWGPISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDYPVK  60

Query  123  REEIWITTKLDNTWHH--------RVQEGIDSSLKSLGVEYVDLYLMHWP  164
            R+++ I TK+ +             +++ ++ SLK LG +Y+DLY +HWP
Sbjct  61   RDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWP  110



Lambda      K        H        a         alpha
   0.318    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00007275

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  163     1e-48


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 163 bits (414),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 89/302 (29%), Positives = 136/302 (45%), Gaps = 60/302 (20%)

Query  73   IGLGTWQ-------SKPNEVREAVKAALLKGYRHIDTSLAYG---NEAEVGQGIRDSGIP  122
            IGLGTWQ           E  EA++AAL  G   IDT+  YG   +E  +G+ ++D  + 
Sbjct  1    IGLGTWQLGGGWGPISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDYPVK  60

Query  123  REEIWITTKLDNTWHH--------RVQEGIDSSLKSLGVEYVDLYLMHWPCSTDPNDKSK  174
            R+++ I TK+ +             +++ ++ SLK LG +Y+DLY +HWP      D   
Sbjct  61   RDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWP------D---  111

Query  175  HLPDWDFIKTWQEMQKLPATGKVRNIGVSNFGIRNLEKLLNDPSTKIVPAVNQIELHP--  232
              PD    +TW  +++L   GK+R IGVSNF    +EK L      IV    Q+E +   
Sbjct  112  --PDTPIEETWDALEELKKEGKIRAIGVSNFDAEQIEKALTKGKIPIV--AVQVEYNLLR  167

Query  233  NNPSPKLVAYNTSKGIHSTGYSCLGS-------TNSPLYKD------------------Q  267
                 +L+ Y    GI    YS LG        T  P                      +
Sbjct  168  RRQEEELLEYCKKNGIPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGTPLNLEALE  227

Query  268  TLLQIAEKKGKTPQQVLLQWGLQ--KGWSVIPKSVSEERIGKNFELDGWDLTADEVNQLD  325
             L +IA++ G +P QV L+W L        IP + + E++  N     + L+ +EV ++D
Sbjct  228  ALEEIAKEHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLSDEEVARID  287

Query  326  NL  327
             L
Sbjct  288  EL  289



Lambda      K        H        a         alpha
   0.315    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00007276

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  142     1e-40


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 142 bits (359),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 126/302 (42%), Gaps = 75/302 (25%)

Query  73   IGLGTWQ-------SKPNEVREAVKAALLKGYRHIDT------------------DSGIP  107
            IGLGTWQ           E  EA++AAL  G   IDT                  D  + 
Sbjct  1    IGLGTWQLGGGWGPISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDYPVK  60

Query  108  REEIWITTKLDNTWHH--------RVQEGIDSSLKSLGVEYVDLYLMHWPCSTDPNDKSK  159
            R+++ I TK+ +             +++ ++ SLK LG +Y+DLY +HWP      D   
Sbjct  61   RDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWP------D---  111

Query  160  HLPDWDFIKTWQEMQKLPATGKVRNIGVSNFGIRNLEKLLNDPSTKIVPAVNQIELHP--  217
              PD    +TW  +++L   GK+R IGVSNF    +EK L      IV    Q+E +   
Sbjct  112  --PDTPIEETWDALEELKKEGKIRAIGVSNFDAEQIEKALTKGKIPIV--AVQVEYNLLR  167

Query  218  NNPSPKLVAYNTSKGIHSTGYSCLGS-------TNSPLYKD------------------Q  252
                 +L+ Y    GI    YS LG        T  P                      +
Sbjct  168  RRQEEELLEYCKKNGIPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGTPLNLEALE  227

Query  253  TLLQIAEKKGKTPQQVLLQWGLQ--KGWSVIPKSVSEERIGKNFELDGWDLTADEVNQLD  310
             L +IA++ G +P QV L+W L        IP + + E++  N     + L+ +EV ++D
Sbjct  228  ALEEIAKEHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLSDEEVARID  287

Query  311  NL  312
             L
Sbjct  288  EL  289



Lambda      K        H        a         alpha
   0.316    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00007277

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  78.9    2e-18


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 78.9 bits (195),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 31/169 (18%)

Query  22   MQKLPATGKVRNIGVSNFGIRNLEKLLNDPSTKIVPAVNQIELHP--NNPSPKLVAYNTS  79
            +++L   GK+R IGVSNF    +EK L      IV    Q+E +        +L+ Y   
Sbjct  123  LEELKKEGKIRAIGVSNFDAEQIEKALTKGKIPIV--AVQVEYNLLRRRQEEELLEYCKK  180

Query  80   KGIHSTGYSCLGS-------TNSPLYKD------------------QTLLQIAEKKGKTP  114
             GI    YS LG        T  P                      + L +IA++ G +P
Sbjct  181  NGIPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGTPLNLEALEALEEIAKEHGVSP  240

Query  115  QQVLLQWGLQ--KGWSVIPKSVSEERIGKNFELDGWDLTADEVNQLDNL  161
             QV L+W L        IP + + E++  N     + L+ +EV ++D L
Sbjct  241  AQVALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLSDEEVARIDEL  289



Lambda      K        H        a         alpha
   0.315    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00007278

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00001647

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00001648

Length=134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  91.6    7e-24


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 91.6 bits (228),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 60/110 (55%), Gaps = 18/110 (16%)

Query  22   IGLGTWQ-------SKPNEVREAVKAALLKGYRHIDTALAYG---NEAEVGQGIRDSGIP  71
            IGLGTWQ           E  EA++AAL  G   IDTA  YG   +E  +G+ ++D  + 
Sbjct  1    IGLGTWQLGGGWGPISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDYPVK  60

Query  72   REEIWITTKLDNTWHH--------RVQEGIDSSLKSLGVEYVDLYLMHWP  113
            R+++ I TK+ +             +++ ++ SLK LG +Y+DLY +HWP
Sbjct  61   RDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWP  110



Lambda      K        H        a         alpha
   0.315    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00001649

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  165     4e-50


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 165 bits (420),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 90/302 (30%), Positives = 136/302 (45%), Gaps = 60/302 (20%)

Query  22   IGLGTWQ-------SKPNEVREAVKAALLKGYRHIDTALAYG---NEAEVGQGIRDSGIP  71
            IGLGTWQ           E  EA++AAL  G   IDTA  YG   +E  +G+ ++D  + 
Sbjct  1    IGLGTWQLGGGWGPISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDYPVK  60

Query  72   REEIWITTKLDNTWHH--------RVQEGIDSSLKSLGVEYVDLYLMHWPCSTDPNDKSK  123
            R+++ I TK+ +             +++ ++ SLK LG +Y+DLY +HWP      D   
Sbjct  61   RDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWP------D---  111

Query  124  HLPDWDFIKTWQEMQKLPATGKVRNIGVSNFGIRNLEKLLNDPSTKIVPAVNQIELHP--  181
              PD    +TW  +++L   GK+R IGVSNF    +EK L      IV    Q+E +   
Sbjct  112  --PDTPIEETWDALEELKKEGKIRAIGVSNFDAEQIEKALTKGKIPIV--AVQVEYNLLR  167

Query  182  NNPSPKLVAYNTSKGIHSTGYSCLGS-------TNSPLYKD------------------Q  216
                 +L+ Y    GI    YS LG        T  P                      +
Sbjct  168  RRQEEELLEYCKKNGIPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGTPLNLEALE  227

Query  217  TLLQIAEKKGKTPQQVLLQWGLQ--KGWSVIPKSVSEERIGKNFELDGWDLTADEVNQLD  274
             L +IA++ G +P QV L+W L        IP + + E++  N     + L+ +EV ++D
Sbjct  228  ALEEIAKEHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLSDEEVARID  287

Query  275  NL  276
             L
Sbjct  288  EL  289



Lambda      K        H        a         alpha
   0.314    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00001652

Length=456


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00001653

Length=443


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00001651

Length=456


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00001654

Length=296


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00007279

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460114 pfam01214, CK_II_beta, Casein kinase II regulatory sub...  213     2e-72


>CDD:460114 pfam01214, CK_II_beta, Casein kinase II regulatory subunit.  

Length=182

 Score = 213 bits (544),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 72/127 (57%), Positives = 95/127 (75%), Gaps = 1/127 (1%)

Query  17   WRDWFISSRGNEYFCEIDEEYLTDRFNLTGLNTEVPYYQYALDLVT-DVFDLDADDDLRE  75
            W  WF S +GNE+FCE+DE+++ D FNLTGL+ +VP Y+ AL+++     +   DD+ R 
Sbjct  2    WISWFCSLKGNEFFCEVDEDFIEDDFNLTGLSAQVPNYKEALEMILDVEDEEKLDDEDRS  61

Query  76   QIEKSARHLYGLVHARYIVTTRGLGKMAEKYKNGDFGKCPRVLCEGQHLLPMGLHDIANQ  135
            ++E SA  LYGL+HARYI+T RGL KM EKY+ GDFG+CPRV C GQ LLP+GL DI  +
Sbjct  62   EVESSAELLYGLIHARYILTPRGLQKMLEKYERGDFGRCPRVYCNGQPLLPVGLSDIPGE  121

Query  136  STVRLYC  142
            STV+LYC
Sbjct  122  STVKLYC  128



Lambda      K        H        a         alpha
   0.321    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00001655

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460114 pfam01214, CK_II_beta, Casein kinase II regulatory sub...  312     9e-110


>CDD:460114 pfam01214, CK_II_beta, Casein kinase II regulatory subunit.  

Length=182

 Score = 312 bits (803),  Expect = 9e-110, Method: Composition-based stats.
 Identities = 100/181 (55%), Positives = 134/181 (74%), Gaps = 1/181 (1%)

Query  17   WRDWFISSRGNEYFCEIDEEYLTDRFNLTGLNTEVPYYQYALDLVT-DVFDLDADDDLRE  75
            W  WF S +GNE+FCE+DE+++ D FNLTGL+ +VP Y+ AL+++     +   DD+ R 
Sbjct  2    WISWFCSLKGNEFFCEVDEDFIEDDFNLTGLSAQVPNYKEALEMILDVEDEEKLDDEDRS  61

Query  76   QIEKSARHLYGLVHARYIVTTRGLGKMAEKYKNGDFGKCPRVLCEGQHLLPMGLHDIANQ  135
            ++E SA  LYGL+HARYI+T RGL KM EKY+ GDFG+CPRV C GQ LLP+GL DI  +
Sbjct  62   EVESSAELLYGLIHARYILTPRGLQKMLEKYERGDFGRCPRVYCNGQPLLPVGLSDIPGE  121

Query  136  STVRLYCAKCEDIYNPKSSRHSSIDGAYFGSSFHSIFFQVFPNLVPPKSTRRYEPRIYGF  195
            STV+LYC +C D+Y PKSSR  +IDGA+FG+SF  +F   +P LVP K  ++Y PRI+GF
Sbjct  122  STVKLYCPRCNDVYLPKSSRSRNIDGAFFGTSFPHLFLLTYPELVPKKPVKKYVPRIFGF  181

Query  196  R  196
            +
Sbjct  182  K  182



Lambda      K        H        a         alpha
   0.317    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00001656

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460114 pfam01214, CK_II_beta, Casein kinase II regulatory sub...  305     3e-106


>CDD:460114 pfam01214, CK_II_beta, Casein kinase II regulatory subunit.  

Length=182

 Score = 305 bits (783),  Expect = 3e-106, Method: Composition-based stats.
 Identities = 98/179 (55%), Positives = 133/179 (74%), Gaps = 1/179 (1%)

Query  45   TQFISSRGNEYFCEIDEEYLTDRFNLTGLNTEVPYYQYALDLVT-DVFDLDADDDLREQI  103
            + F S +GNE+FCE+DE+++ D FNLTGL+ +VP Y+ AL+++     +   DD+ R ++
Sbjct  4    SWFCSLKGNEFFCEVDEDFIEDDFNLTGLSAQVPNYKEALEMILDVEDEEKLDDEDRSEV  63

Query  104  EKSARHLYGLVHARYIVTTRGLGKMAEKYKNGDFGKCPRVLCEGQHLLPMGLHDIANQST  163
            E SA  LYGL+HARYI+T RGL KM EKY+ GDFG+CPRV C GQ LLP+GL DI  +ST
Sbjct  64   ESSAELLYGLIHARYILTPRGLQKMLEKYERGDFGRCPRVYCNGQPLLPVGLSDIPGEST  123

Query  164  VRLYCAKCEDIYNPKSSRHSSIDGAYFGSSFHSIFFQVFPNLVPPKSTRRYEPRIYGFR  222
            V+LYC +C D+Y PKSSR  +IDGA+FG+SF  +F   +P LVP K  ++Y PRI+GF+
Sbjct  124  VKLYCPRCNDVYLPKSSRSRNIDGAFFGTSFPHLFLLTYPELVPKKPVKKYVPRIFGFK  182



Lambda      K        H        a         alpha
   0.318    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00007280

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00007281

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466087 pfam19445, eIF3h_C, C-terminal region of eIF3h. This e...  161     5e-49


>CDD:466087 pfam19445, eIF3h_C, C-terminal region of eIF3h.  This entry represents 
a C-terminal helical region present in eukaryotic 
initiation factor 3 chain H. This protein is part of the eIF3 
complex that is involved in eukaryotic translation initiation. 
eIF3 is a large and structurally complex molecular assembly 
that, in the majority of eukaryotes, consists of 11-13 
subunits (eIF3a-IF3m) with a molecular weight of 600-800 kDa.
Length=196

 Score = 161 bits (410),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 72/209 (34%), Positives = 119/209 (57%), Gaps = 23/209 (11%)

Query  144  SSQGSLSLRAFRLSPKFMTAFKENKFTSEELQKSGLRYQDIFVELPVEIHNSHLITSFIH  203
            ++QG LSL+A+RL+P  M  +KE  F+ E L+K+ + ++++F E+PV I NSHL+   + 
Sbjct  1    TTQGFLSLKAYRLTPAMMEFYKEKDFSPESLKKANIGFENMFEEIPVVIKNSHLVNVLLC  60

Query  204  QLQTPNIPAPTELPSSLAALESGPFVKSSILAPNFDNLALSIDPFLEKNCDLLLDSIETH  263
            +L+                       + S +A     L L+    LEKN   L++ ++  
Sbjct  61   ELE-----------------------EKSPVADKHQLLDLATSSVLEKNLQQLMECVDDM  97

Query  264  HTETNNFQYYQRSLAREQQRISAWQQKRKQENATRAALKQPLLPEDEWQRLFKLPQEPSR  323
              +TN +  YQR ++R+QQ+   + QKR+QENA R    +P LPE++  +LFK  Q P R
Sbjct  98   SQDTNKYINYQRQVSRQQQQKQQYLQKRQQENAQRQQRGEPPLPEEDINKLFKPIQPPPR  157

Query  324  LESMLNSRQVDQYARQIDSFVSSTTGKMF  352
            L+S+L + Q++ Y +Q+  F S + GK+F
Sbjct  158  LDSLLIAGQINTYCQQVSEFTSQSLGKLF  186



Lambda      K        H        a         alpha
   0.316    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00001658

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466087 pfam19445, eIF3h_C, C-terminal region of eIF3h. This e...  161     5e-49


>CDD:466087 pfam19445, eIF3h_C, C-terminal region of eIF3h.  This entry represents 
a C-terminal helical region present in eukaryotic 
initiation factor 3 chain H. This protein is part of the eIF3 
complex that is involved in eukaryotic translation initiation. 
eIF3 is a large and structurally complex molecular assembly 
that, in the majority of eukaryotes, consists of 11-13 
subunits (eIF3a-IF3m) with a molecular weight of 600-800 kDa.
Length=196

 Score = 161 bits (410),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 72/209 (34%), Positives = 119/209 (57%), Gaps = 23/209 (11%)

Query  144  SSQGSLSLRAFRLSPKFMTAFKENKFTSEELQKSGLRYQDIFVELPVEIHNSHLITSFIH  203
            ++QG LSL+A+RL+P  M  +KE  F+ E L+K+ + ++++F E+PV I NSHL+   + 
Sbjct  1    TTQGFLSLKAYRLTPAMMEFYKEKDFSPESLKKANIGFENMFEEIPVVIKNSHLVNVLLC  60

Query  204  QLQTPNIPAPTELPSSLAALESGPFVKSSILAPNFDNLALSIDPFLEKNCDLLLDSIETH  263
            +L+                       + S +A     L L+    LEKN   L++ ++  
Sbjct  61   ELE-----------------------EKSPVADKHQLLDLATSSVLEKNLQQLMECVDDM  97

Query  264  HTETNNFQYYQRSLAREQQRISAWQQKRKQENATRAALKQPLLPEDEWQRLFKLPQEPSR  323
              +TN +  YQR ++R+QQ+   + QKR+QENA R    +P LPE++  +LFK  Q P R
Sbjct  98   SQDTNKYINYQRQVSRQQQQKQQYLQKRQQENAQRQQRGEPPLPEEDINKLFKPIQPPPR  157

Query  324  LESMLNSRQVDQYARQIDSFVSSTTGKMF  352
            L+S+L + Q++ Y +Q+  F S + GK+F
Sbjct  158  LDSLLIAGQINTYCQQVSEFTSQSLGKLF  186



Lambda      K        H        a         alpha
   0.316    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00001657

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466087 pfam19445, eIF3h_C, C-terminal region of eIF3h. This e...  161     5e-49


>CDD:466087 pfam19445, eIF3h_C, C-terminal region of eIF3h.  This entry represents 
a C-terminal helical region present in eukaryotic 
initiation factor 3 chain H. This protein is part of the eIF3 
complex that is involved in eukaryotic translation initiation. 
eIF3 is a large and structurally complex molecular assembly 
that, in the majority of eukaryotes, consists of 11-13 
subunits (eIF3a-IF3m) with a molecular weight of 600-800 kDa.
Length=196

 Score = 161 bits (410),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 72/209 (34%), Positives = 119/209 (57%), Gaps = 23/209 (11%)

Query  144  SSQGSLSLRAFRLSPKFMTAFKENKFTSEELQKSGLRYQDIFVELPVEIHNSHLITSFIH  203
            ++QG LSL+A+RL+P  M  +KE  F+ E L+K+ + ++++F E+PV I NSHL+   + 
Sbjct  1    TTQGFLSLKAYRLTPAMMEFYKEKDFSPESLKKANIGFENMFEEIPVVIKNSHLVNVLLC  60

Query  204  QLQTPNIPAPTELPSSLAALESGPFVKSSILAPNFDNLALSIDPFLEKNCDLLLDSIETH  263
            +L+                       + S +A     L L+    LEKN   L++ ++  
Sbjct  61   ELE-----------------------EKSPVADKHQLLDLATSSVLEKNLQQLMECVDDM  97

Query  264  HTETNNFQYYQRSLAREQQRISAWQQKRKQENATRAALKQPLLPEDEWQRLFKLPQEPSR  323
              +TN +  YQR ++R+QQ+   + QKR+QENA R    +P LPE++  +LFK  Q P R
Sbjct  98   SQDTNKYINYQRQVSRQQQQKQQYLQKRQQENAQRQQRGEPPLPEEDINKLFKPIQPPPR  157

Query  324  LESMLNSRQVDQYARQIDSFVSSTTGKMF  352
            L+S+L + Q++ Y +Q+  F S + GK+F
Sbjct  158  LDSLLIAGQINTYCQQVSEFTSQSLGKLF  186



Lambda      K        H        a         alpha
   0.316    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00007282

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00007283

Length=506


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00001659

Length=377
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466087 pfam19445, eIF3h_C, C-terminal region of eIF3h. This e...  163     2e-49


>CDD:466087 pfam19445, eIF3h_C, C-terminal region of eIF3h.  This entry represents 
a C-terminal helical region present in eukaryotic 
initiation factor 3 chain H. This protein is part of the eIF3 
complex that is involved in eukaryotic translation initiation. 
eIF3 is a large and structurally complex molecular assembly 
that, in the majority of eukaryotes, consists of 11-13 
subunits (eIF3a-IF3m) with a molecular weight of 600-800 kDa.
Length=196

 Score = 163 bits (414),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 72/209 (34%), Positives = 119/209 (57%), Gaps = 23/209 (11%)

Query  156  SSQGSLSLRAFRLSPKFMTAFKENKFTSEELQKSGLRYQDIFVELPVEIHNSHLITSFIH  215
            ++QG LSL+A+RL+P  M  +KE  F+ E L+K+ + ++++F E+PV I NSHL+   + 
Sbjct  1    TTQGFLSLKAYRLTPAMMEFYKEKDFSPESLKKANIGFENMFEEIPVVIKNSHLVNVLLC  60

Query  216  QLQTPNIPAPTELPSSLAALESGPFVKSSILAPNFDNLALSIDPFLEKNCDLLLDSIETH  275
            +L+                       + S +A     L L+    LEKN   L++ ++  
Sbjct  61   ELE-----------------------EKSPVADKHQLLDLATSSVLEKNLQQLMECVDDM  97

Query  276  HTETNNFQYYQRSLAREQQRISAWQQKRKQENATRAALKQPLLPEDEWQRLFKLPQEPSR  335
              +TN +  YQR ++R+QQ+   + QKR+QENA R    +P LPE++  +LFK  Q P R
Sbjct  98   SQDTNKYINYQRQVSRQQQQKQQYLQKRQQENAQRQQRGEPPLPEEDINKLFKPIQPPPR  157

Query  336  LESMLNSRQVDQYARQIDSFVSSTTGKMF  364
            L+S+L + Q++ Y +Q+  F S + GK+F
Sbjct  158  LDSLLIAGQINTYCQQVSEFTSQSLGKLF  186



Lambda      K        H        a         alpha
   0.317    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 447362496


Query= TCONS_00007284

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00007285

Length=506


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00007286

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        78.1    2e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 78.1 bits (193),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 11/88 (13%)

Query  108  MAASMSGMIASVVTTPIDVIKTRMMLSASCHNNDDSNKSTKKKMAGWGTLRVGKEIYRNE  167
            +A  ++G IA  VT P+DV+KTR+ +                K  G G L   K+IY+ E
Sbjct  10   LAGGIAGAIAVTVTYPLDVVKTRLQVQ-----------GGSGKSKGRGILDCFKKIYKEE  58

Query  168  GIRGLFKGGAIRAAWTAASLSMYLSIYE  195
            GIRGL+KG        A + ++Y   YE
Sbjct  59   GIRGLYKGLLPNLLRVAPAAAIYFGTYE  86



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00001661

Length=414


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00007287

Length=1154


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1475823566


Query= TCONS_00001662

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395028 pfam00075, RNase_H, RNase H. RNase H digests the RNA s...  55.5    2e-11


>CDD:395028 pfam00075, RNase_H, RNase H.  RNase H digests the RNA strand 
of an RNA/DNA hybrid. Important enzyme in retroviral replication 
cycle, and often found as a domain associated with reverse 
transcriptases. Structure is a mixed alpha+beta fold with 
three a/b/a layers.
Length=141

 Score = 55.5 bits (134),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 42/86 (49%), Gaps = 10/86 (12%)

Query  22   SAVVIKSDSEYLVRGVTEWLPKWKRNGWKNSR-GLDVANWEHFKAIERLTEDLERHKLTI  80
            S V I +DS+Y++ G+T+W+  WK+NGW  +  G  V N +     + L    ++H++  
Sbjct  61   SKVNIYTDSQYVIGGITQWVHGWKKNGWPTTSEGKPVKNKD---LWQLLKALCKKHQVYW  117

Query  81   KFWHVPRRN----NRDADTMAKAVLR  102
            +   V        N  AD +AK    
Sbjct  118  Q--WVKGHAGNPGNEMADRLAKQGAE  141



Lambda      K        H        a         alpha
   0.323    0.138    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00001663

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00001665

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395028 pfam00075, RNase_H, RNase H. RNase H digests the RNA s...  55.5    2e-11


>CDD:395028 pfam00075, RNase_H, RNase H.  RNase H digests the RNA strand 
of an RNA/DNA hybrid. Important enzyme in retroviral replication 
cycle, and often found as a domain associated with reverse 
transcriptases. Structure is a mixed alpha+beta fold with 
three a/b/a layers.
Length=141

 Score = 55.5 bits (134),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 42/86 (49%), Gaps = 10/86 (12%)

Query  22   SAVVIKSDSEYLVRGVTEWLPKWKRNGWKNSR-GLDVANWEHFKAIERLTEDLERHKLTI  80
            S V I +DS+Y++ G+T+W+  WK+NGW  +  G  V N +     + L    ++H++  
Sbjct  61   SKVNIYTDSQYVIGGITQWVHGWKKNGWPTTSEGKPVKNKD---LWQLLKALCKKHQVYW  117

Query  81   KFWHVPRRN----NRDADTMAKAVLR  102
            +   V        N  AD +AK    
Sbjct  118  Q--WVKGHAGNPGNEMADRLAKQGAE  141



Lambda      K        H        a         alpha
   0.323    0.138    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00001664

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395028 pfam00075, RNase_H, RNase H. RNase H digests the RNA s...  55.5    2e-11


>CDD:395028 pfam00075, RNase_H, RNase H.  RNase H digests the RNA strand 
of an RNA/DNA hybrid. Important enzyme in retroviral replication 
cycle, and often found as a domain associated with reverse 
transcriptases. Structure is a mixed alpha+beta fold with 
three a/b/a layers.
Length=141

 Score = 55.5 bits (134),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 42/86 (49%), Gaps = 10/86 (12%)

Query  22   SAVVIKSDSEYLVRGVTEWLPKWKRNGWKNSR-GLDVANWEHFKAIERLTEDLERHKLTI  80
            S V I +DS+Y++ G+T+W+  WK+NGW  +  G  V N +     + L    ++H++  
Sbjct  61   SKVNIYTDSQYVIGGITQWVHGWKKNGWPTTSEGKPVKNKD---LWQLLKALCKKHQVYW  117

Query  81   KFWHVPRRN----NRDADTMAKAVLR  102
            +   V        N  AD +AK    
Sbjct  118  Q--WVKGHAGNPGNEMADRLAKQGAE  141



Lambda      K        H        a         alpha
   0.323    0.138    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00007288

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00007289

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00007290

Length=483


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593513872


Query= TCONS_00001666

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00001667

Length=483


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593513872


Query= TCONS_00001674

Length=946
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  210     1e-63
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  116     2e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 210 bits (536),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 78/175 (45%), Positives = 108/175 (62%), Gaps = 10/175 (6%)

Query  334  TSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIRDQRPLENMEGPIGLIMTPTR  393
            T IQ++AIPAI+ GRDV+  A TGSGKT+AFL+P    +          GP  L++ PTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK-----LDNGPQALVLAPTR  55

Query  394  ELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAG  453
            ELA QI+++ K   K L L+     GG   K+Q+ +LK G +I+V TPGR++DLL     
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ----  110

Query  454  RVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEAL  508
                L+ +  +VLDEA R+ DMGF P + +I+  +   RQ +L SAT PRN+E L
Sbjct  111  ERKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 116 bits (293),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 44/116 (38%), Positives = 62/116 (53%), Gaps = 9/116 (8%)

Query  543  KFVRLLEILGNLYSDDANEDARALIFVDRQEAADT-LLRELMRKGYPCMSIHGGKDQIDR  601
            K   LLE+L            + LIF   ++  +  LL E  ++G     +HG   Q +R
Sbjct  2    KLEALLELL------KKERGGKVLIFSQTKKTLEAELLLE--KEGIKVARLHGDLSQEER  53

Query  602  DSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAG  657
            +  +EDF+ G   VL+AT VA RGLD+  + LV+NYD P +   Y+ R GR GRAG
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.314    0.132    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1203494600


Query= TCONS_00007292

Length=1111
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  212     4e-64
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  116     2e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 212 bits (542),  Expect = 4e-64, Method: Composition-based stats.
 Identities = 78/175 (45%), Positives = 108/175 (62%), Gaps = 10/175 (6%)

Query  580  TSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIRDQRPLENMEGPIGLIMTPTR  639
            T IQ++AIPAI+ GRDV+  A TGSGKT+AFL+P    +          GP  L++ PTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK-----LDNGPQALVLAPTR  55

Query  640  ELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAG  699
            ELA QI+++ K   K L L+     GG   K+Q+ +LK G +I+V TPGR++DLL     
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ----  110

Query  700  RVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEAL  754
                L+ +  +VLDEA R+ DMGF P + +I+  +   RQ +L SAT PRN+E L
Sbjct  111  ERKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 116 bits (294),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 44/116 (38%), Positives = 62/116 (53%), Gaps = 9/116 (8%)

Query  789  KFVRLLEILGNLYSDDANEDARALIFVDRQEAADT-LLRELMRKGYPCMSIHGGKDQIDR  847
            K   LLE+L            + LIF   ++  +  LL E  ++G     +HG   Q +R
Sbjct  2    KLEALLELL------KKERGGKVLIFSQTKKTLEAELLLE--KEGIKVARLHGDLSQEER  53

Query  848  DSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAG  903
            +  +EDF+ G   VL+AT VA RGLD+  + LV+NYD P +   Y+ R GR GRAG
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.313    0.129    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1415785332


Query= TCONS_00007291

Length=865
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  209     1e-63
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  116     3e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 209 bits (534),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 78/175 (45%), Positives = 108/175 (62%), Gaps = 10/175 (6%)

Query  334  TSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIRDQRPLENMEGPIGLIMTPTR  393
            T IQ++AIPAI+ GRDV+  A TGSGKT+AFL+P    +          GP  L++ PTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK-----LDNGPQALVLAPTR  55

Query  394  ELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAG  453
            ELA QI+++ K   K L L+     GG   K+Q+ +LK G +I+V TPGR++DLL     
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ----  110

Query  454  RVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEAL  508
                L+ +  +VLDEA R+ DMGF P + +I+  +   RQ +L SAT PRN+E L
Sbjct  111  ERKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 116 bits (292),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 44/116 (38%), Positives = 62/116 (53%), Gaps = 9/116 (8%)

Query  543  KFVRLLEILGNLYSDDANEDARALIFVDRQEAADT-LLRELMRKGYPCMSIHGGKDQIDR  601
            K   LLE+L            + LIF   ++  +  LL E  ++G     +HG   Q +R
Sbjct  2    KLEALLELL------KKERGGKVLIFSQTKKTLEAELLLE--KEGIKVARLHGDLSQEER  53

Query  602  DSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAG  657
            +  +EDF+ G   VL+AT VA RGLD+  + LV+NYD P +   Y+ R GR GRAG
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.315    0.132    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1105345780


Query= TCONS_00001669

Length=865
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  209     1e-63
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  116     3e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 209 bits (534),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 78/175 (45%), Positives = 108/175 (62%), Gaps = 10/175 (6%)

Query  334  TSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIRDQRPLENMEGPIGLIMTPTR  393
            T IQ++AIPAI+ GRDV+  A TGSGKT+AFL+P    +          GP  L++ PTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK-----LDNGPQALVLAPTR  55

Query  394  ELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAG  453
            ELA QI+++ K   K L L+     GG   K+Q+ +LK G +I+V TPGR++DLL     
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ----  110

Query  454  RVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEAL  508
                L+ +  +VLDEA R+ DMGF P + +I+  +   RQ +L SAT PRN+E L
Sbjct  111  ERKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 116 bits (292),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 44/116 (38%), Positives = 62/116 (53%), Gaps = 9/116 (8%)

Query  543  KFVRLLEILGNLYSDDANEDARALIFVDRQEAADT-LLRELMRKGYPCMSIHGGKDQIDR  601
            K   LLE+L            + LIF   ++  +  LL E  ++G     +HG   Q +R
Sbjct  2    KLEALLELL------KKERGGKVLIFSQTKKTLEAELLLE--KEGIKVARLHGDLSQEER  53

Query  602  DSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAG  657
            +  +EDF+ G   VL+AT VA RGLD+  + LV+NYD P +   Y+ R GR GRAG
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.315    0.132    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1105345780


Query= TCONS_00001670

Length=835
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  210     3e-64
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  116     3e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 210 bits (537),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 78/175 (45%), Positives = 108/175 (62%), Gaps = 10/175 (6%)

Query  304  TSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIRDQRPLENMEGPIGLIMTPTR  363
            T IQ++AIPAI+ GRDV+  A TGSGKT+AFL+P    +          GP  L++ PTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK-----LDNGPQALVLAPTR  55

Query  364  ELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAG  423
            ELA QI+++ K   K L L+     GG   K+Q+ +LK G +I+V TPGR++DLL     
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ----  110

Query  424  RVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEAL  478
                L+ +  +VLDEA R+ DMGF P + +I+  +   RQ +L SAT PRN+E L
Sbjct  111  ERKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 116 bits (292),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 44/116 (38%), Positives = 62/116 (53%), Gaps = 9/116 (8%)

Query  513  KFVRLLEILGNLYSDDANEDARALIFVDRQEAADT-LLRELMRKGYPCMSIHGGKDQIDR  571
            K   LLE+L            + LIF   ++  +  LL E  ++G     +HG   Q +R
Sbjct  2    KLEALLELL------KKERGGKVLIFSQTKKTLEAELLLE--KEGIKVARLHGDLSQEER  53

Query  572  DSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAG  627
            +  +EDF+ G   VL+AT VA RGLD+  + LV+NYD P +   Y+ R GR GRAG
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.314    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1062280360


Query= TCONS_00001672

Length=946
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  210     1e-63
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  116     2e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 210 bits (536),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 78/175 (45%), Positives = 108/175 (62%), Gaps = 10/175 (6%)

Query  334  TSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIRDQRPLENMEGPIGLIMTPTR  393
            T IQ++AIPAI+ GRDV+  A TGSGKT+AFL+P    +          GP  L++ PTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK-----LDNGPQALVLAPTR  55

Query  394  ELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAG  453
            ELA QI+++ K   K L L+     GG   K+Q+ +LK G +I+V TPGR++DLL     
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ----  110

Query  454  RVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEAL  508
                L+ +  +VLDEA R+ DMGF P + +I+  +   RQ +L SAT PRN+E L
Sbjct  111  ERKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 116 bits (293),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 44/116 (38%), Positives = 62/116 (53%), Gaps = 9/116 (8%)

Query  543  KFVRLLEILGNLYSDDANEDARALIFVDRQEAADT-LLRELMRKGYPCMSIHGGKDQIDR  601
            K   LLE+L            + LIF   ++  +  LL E  ++G     +HG   Q +R
Sbjct  2    KLEALLELL------KKERGGKVLIFSQTKKTLEAELLLE--KEGIKVARLHGDLSQEER  53

Query  602  DSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAG  657
            +  +EDF+ G   VL+AT VA RGLD+  + LV+NYD P +   Y+ R GR GRAG
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.314    0.132    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1203494600


Query= TCONS_00001671

Length=1192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  212     4e-64
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  117     2e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 212 bits (542),  Expect = 4e-64, Method: Composition-based stats.
 Identities = 78/175 (45%), Positives = 108/175 (62%), Gaps = 10/175 (6%)

Query  580  TSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIRDQRPLENMEGPIGLIMTPTR  639
            T IQ++AIPAI+ GRDV+  A TGSGKT+AFL+P    +          GP  L++ PTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK-----LDNGPQALVLAPTR  55

Query  640  ELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAG  699
            ELA QI+++ K   K L L+     GG   K+Q+ +LK G +I+V TPGR++DLL     
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ----  110

Query  700  RVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEAL  754
                L+ +  +VLDEA R+ DMGF P + +I+  +   RQ +L SAT PRN+E L
Sbjct  111  ERKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 117 bits (295),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 44/116 (38%), Positives = 62/116 (53%), Gaps = 9/116 (8%)

Query  789  KFVRLLEILGNLYSDDANEDARALIFVDRQEAADT-LLRELMRKGYPCMSIHGGKDQIDR  847
            K   LLE+L            + LIF   ++  +  LL E  ++G     +HG   Q +R
Sbjct  2    KLEALLELL------KKERGGKVLIFSQTKKTLEAELLLE--KEGIKVARLHGDLSQEER  53

Query  848  DSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAG  903
            +  +EDF+ G   VL+AT VA RGLD+  + LV+NYD P +   Y+ R GR GRAG
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.312    0.129    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0611    0.140     1.90     42.6     43.6 

Effective search space used: 1528880610


Query= TCONS_00001673

Length=916
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  210     5e-64
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  116     2e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 210 bits (538),  Expect = 5e-64, Method: Composition-based stats.
 Identities = 78/175 (45%), Positives = 108/175 (62%), Gaps = 10/175 (6%)

Query  304  TSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIRDQRPLENMEGPIGLIMTPTR  363
            T IQ++AIPAI+ GRDV+  A TGSGKT+AFL+P    +          GP  L++ PTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK-----LDNGPQALVLAPTR  55

Query  364  ELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAG  423
            ELA QI+++ K   K L L+     GG   K+Q+ +LK G +I+V TPGR++DLL     
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ----  110

Query  424  RVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEAL  478
                L+ +  +VLDEA R+ DMGF P + +I+  +   RQ +L SAT PRN+E L
Sbjct  111  ERKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 116 bits (293),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 44/116 (38%), Positives = 62/116 (53%), Gaps = 9/116 (8%)

Query  513  KFVRLLEILGNLYSDDANEDARALIFVDRQEAADT-LLRELMRKGYPCMSIHGGKDQIDR  571
            K   LLE+L            + LIF   ++  +  LL E  ++G     +HG   Q +R
Sbjct  2    KLEALLELL------KKERGGKVLIFSQTKKTLEAELLLE--KEGIKVARLHGDLSQEER  53

Query  572  DSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAG  627
            +  +EDF+ G   VL+AT VA RGLD+  + LV+NYD P +   Y+ R GR GRAG
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.313    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1178556994


Query= TCONS_00001668

Length=916
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  210     5e-64
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  116     2e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 210 bits (538),  Expect = 5e-64, Method: Composition-based stats.
 Identities = 78/175 (45%), Positives = 108/175 (62%), Gaps = 10/175 (6%)

Query  304  TSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIRDQRPLENMEGPIGLIMTPTR  363
            T IQ++AIPAI+ GRDV+  A TGSGKT+AFL+P    +          GP  L++ PTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK-----LDNGPQALVLAPTR  55

Query  364  ELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAG  423
            ELA QI+++ K   K L L+     GG   K+Q+ +LK G +I+V TPGR++DLL     
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ----  110

Query  424  RVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEAL  478
                L+ +  +VLDEA R+ DMGF P + +I+  +   RQ +L SAT PRN+E L
Sbjct  111  ERKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 116 bits (293),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 44/116 (38%), Positives = 62/116 (53%), Gaps = 9/116 (8%)

Query  513  KFVRLLEILGNLYSDDANEDARALIFVDRQEAADT-LLRELMRKGYPCMSIHGGKDQIDR  571
            K   LLE+L            + LIF   ++  +  LL E  ++G     +HG   Q +R
Sbjct  2    KLEALLELL------KKERGGKVLIFSQTKKTLEAELLLE--KEGIKVARLHGDLSQEER  53

Query  572  DSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAG  627
            +  +EDF+ G   VL+AT VA RGLD+  + LV+NYD P +   Y+ R GR GRAG
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.313    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1178556994


Query= TCONS_00001675

Length=1211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  212     5e-64
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  117     2e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 212 bits (542),  Expect = 5e-64, Method: Composition-based stats.
 Identities = 78/175 (45%), Positives = 108/175 (62%), Gaps = 10/175 (6%)

Query  599  TSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIRDQRPLENMEGPIGLIMTPTR  658
            T IQ++AIPAI+ GRDV+  A TGSGKT+AFL+P    +          GP  L++ PTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK-----LDNGPQALVLAPTR  55

Query  659  ELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAG  718
            ELA QI+++ K   K L L+     GG   K+Q+ +LK G +I+V TPGR++DLL     
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ----  110

Query  719  RVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEAL  773
                L+ +  +VLDEA R+ DMGF P + +I+  +   RQ +L SAT PRN+E L
Sbjct  111  ERKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 117 bits (295),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 44/116 (38%), Positives = 62/116 (53%), Gaps = 9/116 (8%)

Query  808  KFVRLLEILGNLYSDDANEDARALIFVDRQEAADT-LLRELMRKGYPCMSIHGGKDQIDR  866
            K   LLE+L            + LIF   ++  +  LL E  ++G     +HG   Q +R
Sbjct  2    KLEALLELL------KKERGGKVLIFSQTKKTLEAELLLE--KEGIKVARLHGDLSQEER  53

Query  867  DSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAG  922
            +  +EDF+ G   VL+AT VA RGLD+  + LV+NYD P +   Y+ R GR GRAG
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.313    0.129    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1555409132


Query= TCONS_00007294

Length=586


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 738247432


Query= TCONS_00007293

Length=526


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00001676

Length=114
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  57.1    1e-11


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 57.1 bits (139),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 25/111 (23%), Positives = 38/111 (34%), Gaps = 29/111 (26%)

Query  1    MTRTWARELADR-ATVNAVNPGPVIGDMYFATGEEFWKQMQGFQDATPLSKMDEDDPQLK  59
            +TR  A EL  R   VNA++PGP+                      T  +       +L 
Sbjct  153  LTRYLAVELGPRGIRVNAISPGPI---------------------KTLAASGIPGFDELL  191

Query  60   ELSEEQIRLIKEKMGGRRPAFTSEIAGVVGMLCTADGLWCTGSVVCANGGM  110
              +E +  L        R     E+A     L +    + TG V+  +GG 
Sbjct  192  AAAEARAPL-------GRLGTPEEVANAAAFLASDLASYITGQVLYVDGGY  235



Lambda      K        H        a         alpha
   0.319    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00007295

Length=533


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00001677

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429121 pfam06792, UPF0261, Uncharacterized protein family (UP...  563     0.0  


>CDD:429121 pfam06792, UPF0261, Uncharacterized protein family (UPF0261). 
 
Length=400

 Score = 563 bits (1454),  Expect = 0.0, Method: Composition-based stats.
 Identities = 225/413 (54%), Positives = 275/413 (67%), Gaps = 13/413 (3%)

Query  6    TIVLIGTCDTKWDELCFTRSQLLIHNTCAVLLMDIGRTPSPHRSIAIKHPDLTSTDTDTH  65
            T++LIGT DTK +EL F R  +       VLL+D+G    PH +  I   ++      T 
Sbjct  1    TVLLIGTLDTKGEELLFLRDLIE-AAGVEVLLIDVGTRGPPHFAADISREEVAEAAGTT-  58

Query  66   NAPKLSNLPRSEYIHRMTSHAITALTNLHRTGSIHAVLGIGGSCGTALAAAAMRAALPVG  125
                + +L R E I  M+  A   +  L+  G I   +G+GGS GT+LA AAMRA  P+G
Sbjct  59   LEALIESLDRGEAIEAMSEGAAKFVRELYEGGLIG-GIGLGGSGGTSLATAAMRAL-PIG  116

Query  126  FPKLMVSTMASGDVSPYVEETDLTLMYSVVDVAGTNRILNRILTNAAAAATGMAVSYASH  185
             PKLMVSTMASGD SPYV E+D+T+MYSVVD+AG NRI  R+L+NAA A  GMA +Y   
Sbjct  117  VPKLMVSTMASGDTSPYVGESDITMMYSVVDIAGLNRISRRVLSNAAGAIAGMAKAYEPR  176

Query  186  AQAPSDTSHSKTQIAITMFGVTTPAVNTIRDRLQQTINCEVYVFHATGAGGKAMERLIRE  245
             +  S     K  I ITMFGVTTP V+  R+RL++    EV VFHATG GG+AMERLIRE
Sbjct  177  LRESS---EDKPLIGITMFGVTTPCVDAARERLEEE-GYEVLVFHATGTGGRAMERLIRE  232

Query  246  GQLDAVVDLTTTEIADEIVGGALSAGPRRLIAAAEAGLPQIVSVGACDMVNFGPRETVPA  305
            G +D V+DLTTTE+ADE+ GG LSAGP RL AAAEAG+PQ+VS GA DMVNFGPR+TVP 
Sbjct  233  GLIDGVLDLTTTEVADELFGGVLSAGPDRLEAAAEAGIPQVVSPGALDMVNFGPRDTVPE  292

Query  306  RFRDGHRLLHEHNPTVTVMRTTVEECVRIARFMAEKLKAHVAHPERVRVILPAAGISMLD  365
            RF+   R L+EHNP VT+MRTT EE   I RF+AEKL         VRV+LP  G+S LD
Sbjct  293  RFKG--RKLYEHNPQVTLMRTTPEENREIGRFIAEKLNRAAG---PVRVLLPLGGVSALD  347

Query  366  TPGQPFHDREADEALFSTLENELDGTGIAVVRDTRPINDPEFAISVADSLADL  418
             PG PF+D EAD ALF TL   L GTGI V+     INDPEFA +VA++L +L
Sbjct  348  APGGPFYDPEADAALFDTLREGLKGTGIEVIEVDAHINDPEFAEAVAEALLEL  400



Lambda      K        H        a         alpha
   0.320    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00001678

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.146    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00001679

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family             65.3    8e-13


>CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family.  
Length=250

 Score = 65.3 bits (160),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 77/211 (36%), Gaps = 19/211 (9%)

Query  101  NKPWRPLPSKRLSGPQAKRLMFGFYALAVVYSCFYSGGLRQCLGLIILGTCYNSFGAGDH  160
              P RPLPS R+S  +A        AL ++     +          +L     +      
Sbjct  53   RTPNRPLPSGRISPREALIFALVLLALGLLLLLLLNPLTALLGLAALLLYVLYTLRLKRR  112

Query  161  NPVIRNIINALGYFCFNSGAVEVALGSGSAVFTERPEARQYSLRLWIMVITAI-ILTTMH  219
              ++  ++  L +            GS S +             L + +   +       
Sbjct  113  -TLLGQLVGGLAFGLPPLLGWAAVTGSLSPLA------------LLLALALFLWTWAIAL  159

Query  220  VQDMCDQEGDAKRGRRTLPLVIGDAAARWSIALPM--PVWGVICPLLADSGPLATGLSFM  277
              D+ D+E D K G +TLP+V+G  AAR  +AL +   +  ++  LL   G L   L+ +
Sbjct  160  ANDLRDREDDRKAGIKTLPVVLGRKAARILLALLLAVALLLLLLLLLLLLGGLYLLLALL  219

Query  278  LA---FAVAIRMLMWRDTASDRMTFRVWNLW  305
            LA      A R+L  RD   D   F   +  
Sbjct  220  LAALALLYAARLLRLRDPKKDAKAFFFLSSL  250



Lambda      K        H        a         alpha
   0.326    0.139    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 372672612


Query= TCONS_00001680

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin. Th...  272     2e-89
CDD:462898 pfam09785, Prp31_C, Prp31 C terminal domain. This is t...  151     9e-45


>CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin.  This family 
consists of various Pre RNA processing ribonucleoproteins. 
The function of the aligned region is unknown however it 
may be a common RNA or snoRNA or Nop1p binding domain. Nop5p 
(Nop58p) from yeast is the protein component of a ribonucleoprotein 
required for pre-18s rRNA processing and is suggested 
to function with Nop1p in a snoRNA complex. Nop56p and Nop5p 
interact with Nop1p and are required for ribosome biogenesis. 
Prp31p is required for pre-mRNA splicing in S. cerevisiae. 
Fibrillarin, or Nop, is the catalytic subunit responsible 
for the methyl transfer reaction of the site-specific 2'-O-methylation 
of ribosomal and spliceosomal RNA.
Length=229

 Score = 272 bits (697),  Expect = 2e-89, Method: Composition-based stats.
 Identities = 90/236 (38%), Positives = 139/236 (59%), Gaps = 12/236 (5%)

Query  52   DELTRLHKSLRDHYSIRFPELETLVTNPIDYAKTVAILKNGPLNDIKALSSSADNMVGAP  111
             E+  +H  +R+ YS  FPELE+LV +P+DYAK V ++ N   +  K             
Sbjct  6    KEINLVHMRIREWYSWHFPELESLVPDPLDYAKVVKLIGNDREDLTKIDPDLE-------  58

Query  112  LKSILDGPSLMVVAVEGTTTRGREMTEAELKVVLDTCERILKLDRERTALTQSIQSRMNQ  171
                L    +M  +V  +T+ G E++E +L+ +L+ C+R+L+LD  R  L + ++SRM+ 
Sbjct  59   ----LAKAIIMAASVTASTSMGTELSEEDLENILEACDRVLELDEYRKKLLEYLESRMSA  114

Query  172  IAPNLAALIGPETAAQFLNQTGGLRELAKIPACNLAAQGSKRSEGLGFATNIGIRSQGFL  231
            IAPNL AL+GP  AA+ ++  GGL  LAK+PA N+   G++++      T       G +
Sbjct  115  IAPNLTALVGPLVAARLISHAGGLTNLAKMPASNIQILGAEKALFRALKTGFNTPKYGLI  174

Query  232  YHSPIIQDIPNDLKKQAIRIVAAKMVLATRADVAKYSPDGSLGEELKQQCYQRLEK  287
            YHSP++Q  P  L+ +A R++AAK  LA R D A   PDGS GE+L+++  +RLEK
Sbjct  175  YHSPLVQATPPKLRGKAARLLAAKCALAARVD-AFSEPDGSYGEKLREEIEKRLEK  229


>CDD:462898 pfam09785, Prp31_C, Prp31 C terminal domain.  This is the C terminal 
domain of the pre-mRNA processing factor Prp31. Prp31 
is required for U4/U6.U5 tri-snRNP formation. In humans this 
protein has been linked to autosomal dominant retinitis pigmentosa.
Length=121

 Score = 151 bits (385),  Expect = 9e-45, Method: Composition-based stats.
 Identities = 88/157 (56%), Positives = 100/157 (64%), Gaps = 36/157 (23%)

Query  294  NAGVKALPAPDDKPSRKRGGRRARKAKEAIAMTELRKAQNRVAFGKEEAEVGYGTGETTV  353
               VKALPAPDDKP +KRGGRRARK KE  AMTELRKAQNR+AFGKEE EVG G G T +
Sbjct  1    AKQVKALPAPDDKPKKKRGGRRARKMKERYAMTELRKAQNRMAFGKEEEEVGDGDG-TGI  59

Query  354  GLGMLGQQNDGRIRATQIDQRTRAKLSKSNKGWGAATPISGTATSLRGFGSGAGGTASVL  413
            GLGMLGQ   GRIRATQ+D +T+AKLSK                                
Sbjct  60   GLGMLGQGGSGRIRATQVDNKTKAKLSKKL------------------------------  89

Query  414  QAKGLRTSGVGPSFAGIAGTASTIAFTPVQGLELVDP  450
            + +  R+SGVG S     GTAS++AFTPVQGLELV+P
Sbjct  90   KKRLQRSSGVGTS-----GTASSLAFTPVQGLELVNP  121



Lambda      K        H        a         alpha
   0.312    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 648020248


Query= TCONS_00001681

Length=676


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 859802570


Query= TCONS_00001682

Length=693


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 884874000


Query= TCONS_00007296

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00001684

Length=740


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00001683

Length=740


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00001685

Length=286


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.123    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0754    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00001686

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00001687

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00007297

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00007298

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00001689

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00007300

Length=169
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  130     2e-38


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 130 bits (330),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 56/150 (37%), Positives = 81/150 (54%), Gaps = 3/150 (2%)

Query  13   GYGMMRMTWAPQLPSEEKCFETLNTALALGANFWNGGELYGTPEYNSLHLLNKYFTKYPE  72
            G G  ++       S+E+  E L  AL  G NF +  E+YG  +  S  LL +    YP 
Sbjct  2    GLGTWQLGGGWGPISKEEALEALRAALEAGINFIDTAEVYGDGK--SEELLGEALKDYPV  59

Query  73   NADKVVLSIKGGLKPGELVPDGSEENIRRSVDECLRVLDGKKTIDIFECARQDPNTTVEQ  132
              DKVV++ K     G     GS+ENIR+S++E L+ L     ID++     DP+T +E+
Sbjct  60   KRDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTD-YIDLYYLHWPDPDTPIEE  118

Query  133  TVTILAQLVKEGKIKGIGLSEVNAETIRRA  162
            T   L +L KEGKI+ IG+S  +AE I +A
Sbjct  119  TWDALEELKKEGKIRAIGVSNFDAEQIEKA  148



Lambda      K        H        a         alpha
   0.315    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00001690

Length=1476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  285     1e-87
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  104     6e-27
CDD:459793 pfam00385, Chromo, Chromo (CHRromatin Organisation MOd...  64.9    1e-13
CDD:408024 pfam18196, Cdh1_DBD_1, Chromodomain helicase DNA-bindi...  58.6    9e-11


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 285 bits (732),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 114/298 (38%), Positives = 170/298 (57%), Gaps = 27/298 (9%)

Query  453  QVKGVNFMAFNW-VKNRNVVLADEMGLGKTVQTVAFIAWLRHVRRQQG-PFIVVVPLSTM  510
            Q++GVN+M        R  +LADEMGLGKT+QT++ + +L+HV +  G P ++VVPLS +
Sbjct  2    QIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGPTLIVVPLSLL  61

Query  511  PSWAETFDNWT--PDLNYVVYNGNEAARTMLKDYELMIDGNPRRAKFNVLLTTYEYVLQD  568
             +W   F+ W   P L  VV +GN+  +   K+     D N   A F+V++TTYE + + 
Sbjct  62   HNWMNEFERWVSPPALRVVVLHGNKRPQERWKN-----DPN-FLADFDVVITTYETLRKH  115

Query  569  STFLSQFKWQFMAVDEAHRLKNRDSQLYQKLLEFKSPARLLITGTPIQNNLAELSALMDF  628
               L +  W  + +DE HRLKN  S+L + L   K+  R ++TGTP+QNNL EL AL++F
Sbjct  116  KELLKKVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQNNLEELWALLNF  175

Query  629  LNPGV----------IDVDVDMDLNAEAASQKLAALTNAIQPYMLRRTKSKVESDLPPKT  678
            L PG            D  ++     +    +L  L   ++P++LRRTK  VE  LPPK 
Sbjct  176  LRPGPFGSLSTFRNWFDRPIER-GGGKKGVSRLHKL---LKPFLLRRTKKDVEKSLPPKV  231

Query  679  EKIIRVELSDVQLEYYKN-ILTKNYAALNDGAQGQKQ--SLLNIMMELKKASNHPFMF  733
            E I+   LS +Q + Y+  +L K+  A+  G  G++   SLLNI+M L+K  NHP + 
Sbjct  232  EYILFCRLSKLQRKLYQTFLLKKDLNAIKTGEGGREIKASLLNILMRLRKICNHPGLI  289


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 104 bits (262),  Expect = 6e-27, Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 6/115 (5%)

Query  759  GKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGDYMESRGYSYQRLDGTIPAASRRLAI  818
             K+  L +LL K    G +VLIFSQ  K L+     +E  G    RL G +    R   +
Sbjct  1    EKLEALLELLKK--ERGGKVLIFSQTKKTLEA-ELLLEKEGIKVARLHGDLSQEEREEIL  57

Query  819  EHFNAPGSSDFCFLLSTRAGGLGINLMTADTVILFDSDWNPQADLQAMARAHRIG  873
            E F          L++T     G++L   D VI +D  WNP + +Q + RA R G
Sbjct  58   EDFR---KGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109


>CDD:459793 pfam00385, Chromo, Chromo (CHRromatin Organisation MOdifier) 
domain.  
Length=52

 Score = 64.9 bits (159),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 22/53 (42%), Positives = 29/53 (55%), Gaps = 2/53 (4%)

Query  363  KQVERVIAMR-DGDEGTEYLVKWKRLFYDSCTWESESLVSEIAQREVDRFLDR  414
             +VER++  R D     EYLVKWK   YD  TWE E  +S+     ++ F DR
Sbjct  1    YEVERILDHRKDKGGKEEYLVKWKGYPYDENTWEPEENLSK-CPELIEEFKDR  52


>CDD:408024 pfam18196, Cdh1_DBD_1, Chromodomain helicase DNA-binding domain 
1.  This domain can be found in chromodomain helicase DNA-binding 
protein 1 (Chd1) present in Saccharomyces cerevisiae. 
Cdh1 proteins have been associated with the efficient assembly 
and spacing of nucleosomes. The domain consists of four 
helices, alpha helix 1-4, and can be divided into regions 
SANT, HL1 and the beta-linker. The HL1 region comprises of some 
40 residues specific to budding yeast that are unlikely 
to form such a prominent feature or perform a conserved function 
in other species. The domain itself forms part of the DNA-binding 
domain. Basic residues on the alpha-1 helix are thought 
to be important for DNA interaction.
Length=120

 Score = 58.6 bits (142),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 29/120 (24%)

Query  1089  LNHKEIRHLYRALVRYGDINERTEDFLREARLMDRDRETIVAVLREMSDMAAQLIREDDA  1148
             L  +EIR LY+A++RYGD++   E+ + +  L  +  E    + RE+ + A ++++E++ 
Sbjct  1     LGEREIRALYKAILRYGDLSNMFEELIADGSLPQKSIERYEELYRELIEQAKRVVKEEEE  60

Query  1149  K----MEALE--------------------KAGKMVTK-----KERKAVLFDFKGANRLN  1179
             K    +EALE                         +TK     +E+KA+LF+F G   LN
Sbjct  61    KRNEELEALEADAMAYKAALKGGGVTADDQPKDTPITKLAAKRREKKAILFEFYGVKNLN  120



Lambda      K        H        a         alpha
   0.314    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1868536674


Query= TCONS_00001691

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  121     5e-35


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 121 bits (305),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 54/137 (39%), Positives = 77/137 (56%), Gaps = 3/137 (2%)

Query  8    PSEEKCFETLNTALALGANFWNGGELYGTPEYNSLHLLNKYFTKYPENADKVVLSIKGGL  67
             S+E+  E L  AL  G NF +  E+YG  +  S  LL +    YP   DKVV++ K   
Sbjct  15   ISKEEALEALRAALEAGINFIDTAEVYGDGK--SEELLGEALKDYPVKRDKVVIATKVPD  72

Query  68   KPGELVPDGSEENIRRSVDECLRVLDGKKTIDIFECARQDPNTTVEQTVTILAQLVKEGK  127
              G     GS+ENIR+S++E L+ L     ID++     DP+T +E+T   L +L KEGK
Sbjct  73   GDGPWPSGGSKENIRKSLEESLKRLGTD-YIDLYYLHWPDPDTPIEETWDALEELKKEGK  131

Query  128  IKGIGLSEVNAETIRRA  144
            I+ IG+S  +AE I +A
Sbjct  132  IRAIGVSNFDAEQIEKA  148



Lambda      K        H        a         alpha
   0.315    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00001692

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00001693

Length=659
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  84.6    8e-20


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 84.6 bits (210),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 26/155 (17%)

Query  360  LGNFHLKIDAGSFTDSEIIVMMGENGTGKTTFCRMLAGAEKPD-GNVT------------  406
            L N  L ++ G     EI+ ++G NG GK+T  +++AG   P  G +             
Sbjct  1    LKNVSLTLNPG-----EILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERK  55

Query  407  MPRMHISMKPQKITPKFQGTVRQ-LFFKRIKAAFLSPQFQTDVYK-------PLKIDDFI  458
              R  I    Q      + TVR+ L    +       +      +           D  +
Sbjct  56   SLRKEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPV  115

Query  459  DQEVQNLSGGELQRVAIVLALGMPADIYVIDEPSA  493
             +    LSGG+ QRVAI  AL     + ++DEP+A
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 80.4 bits (199),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 32/168 (19%)

Query  91   SFKLHRLPMPRPGQVLGLVGTNGIGKSTALKILSGKLKPNLGR--YDNPPDWEEILRYFR  148
            S  L+      PG++L LVG NG GKST LK+++G L P  G    D     ++  +  R
Sbjct  5    SLTLN------PGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLR  58

Query  149  G--------SELQNYFTKVLEDNLKAVVKPQYVDQIPRAVKGPVKNVGELIKARSQMDNM  200
                      +L    T  + +NL+  +  + + +  +             +A  ++   
Sbjct  59   KEIGYVFQDPQLFPRLT--VRENLRLGLLLKGLSKREKDA--------RAEEALEKLGLG  108

Query  201  ERILDALELRQVQDRDIDHLSGGELQRFAIGLVCVQKADVYMFDEPSS  248
            +         +        LSGG+ QR AI    + K  + + DEP++
Sbjct  109  DL------ADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.323    0.139    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 834731140


Query= TCONS_00007301

Length=677
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  84.6    8e-20


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 84.6 bits (210),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 26/155 (17%)

Query  378  LGNFHLKIDAGSFTDSEIIVMMGENGTGKTTFCRMLAGAEKPD-GNVT------------  424
            L N  L ++ G     EI+ ++G NG GK+T  +++AG   P  G +             
Sbjct  1    LKNVSLTLNPG-----EILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERK  55

Query  425  MPRMHISMKPQKITPKFQGTVRQ-LFFKRIKAAFLSPQFQTDVYK-------PLKIDDFI  476
              R  I    Q      + TVR+ L    +       +      +           D  +
Sbjct  56   SLRKEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPV  115

Query  477  DQEVQNLSGGELQRVAIVLALGMPADIYVIDEPSA  511
             +    LSGG+ QRVAI  AL     + ++DEP+A
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 80.4 bits (199),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 32/168 (19%)

Query  109  SFKLHRLPMPRPGQVLGLVGTNGIGKSTALKILSGKLKPNLGR--YDNPPDWEEILRYFR  166
            S  L+      PG++L LVG NG GKST LK+++G L P  G    D     ++  +  R
Sbjct  5    SLTLN------PGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLR  58

Query  167  G--------SELQNYFTKVLEDNLKAVVKPQYVDQIPRAVKGPVKNVGELIKARSQMDNM  218
                      +L    T  + +NL+  +  + + +  +             +A  ++   
Sbjct  59   KEIGYVFQDPQLFPRLT--VRENLRLGLLLKGLSKREKDA--------RAEEALEKLGLG  108

Query  219  ERILDALELRQVQDRDIDHLSGGELQRFAIGLVCVQKADVYMFDEPSS  266
            +         +        LSGG+ QR AI    + K  + + DEP++
Sbjct  109  DL------ADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.323    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 861277360


Query= TCONS_00001694

Length=418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  84.6    4e-20


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 84.6 bits (210),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 26/155 (17%)

Query  119  LGNFHLKIDAGSFTDSEIIVMMGENGTGKTTFCRMLAGAEKPD-GNVT------------  165
            L N  L ++ G     EI+ ++G NG GK+T  +++AG   P  G +             
Sbjct  1    LKNVSLTLNPG-----EILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERK  55

Query  166  MPRMHISMKPQKITPKFQGTVRQ-LFFKRIKAAFLSPQFQTDVYK-------PLKIDDFI  217
              R  I    Q      + TVR+ L    +       +      +           D  +
Sbjct  56   SLRKEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPV  115

Query  218  DQEVQNLSGGELQRVAIVLALGMPADIYVIDEPSA  252
             +    LSGG+ QRVAI  AL     + ++DEP+A
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.324    0.139    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00001695

Length=662
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  84.6    8e-20


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 84.6 bits (210),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 26/155 (17%)

Query  363  LGNFHLKIDAGSFTDSEIIVMMGENGTGKTTFCRMLAGAEKPD-GNVT------------  409
            L N  L ++ G     EI+ ++G NG GK+T  +++AG   P  G +             
Sbjct  1    LKNVSLTLNPG-----EILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERK  55

Query  410  MPRMHISMKPQKITPKFQGTVRQ-LFFKRIKAAFLSPQFQTDVYK-------PLKIDDFI  461
              R  I    Q      + TVR+ L    +       +      +           D  +
Sbjct  56   SLRKEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPV  115

Query  462  DQEVQNLSGGELQRVAIVLALGMPADIYVIDEPSA  496
             +    LSGG+ QRVAI  AL     + ++DEP+A
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 80.4 bits (199),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 32/168 (19%)

Query  94   SFKLHRLPMPRPGQVLGLVGTNGIGKSTALKILSGKLKPNLGR--YDNPPDWEEILRYFR  151
            S  L+      PG++L LVG NG GKST LK+++G L P  G    D     ++  +  R
Sbjct  5    SLTLN------PGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLR  58

Query  152  G--------SELQNYFTKVLEDNLKAVVKPQYVDQIPRAVKGPVKNVGELIKARSQMDNM  203
                      +L    T  + +NL+  +  + + +  +             +A  ++   
Sbjct  59   KEIGYVFQDPQLFPRLT--VRENLRLGLLLKGLSKREKDA--------RAEEALEKLGLG  108

Query  204  ERILDALELRQVQDRDIDHLSGGELQRFAIGLVCVQKADVYMFDEPSS  251
            +         +        LSGG+ QR AI    + K  + + DEP++
Sbjct  109  DL------ADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.323    0.140    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 839155510


Query= TCONS_00001696

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  84.6    2e-20


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 84.6 bits (210),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 26/155 (17%)

Query  119  LGNFHLKIDAGSFTDSEIIVMMGENGTGKTTFCRMLAGAEKPD-GNVT------------  165
            L N  L ++ G     EI+ ++G NG GK+T  +++AG   P  G +             
Sbjct  1    LKNVSLTLNPG-----EILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERK  55

Query  166  MPRMHISMKPQKITPKFQGTVRQ-LFFKRIKAAFLSPQFQTDVYK-------PLKIDDFI  217
              R  I    Q      + TVR+ L    +       +      +           D  +
Sbjct  56   SLRKEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPV  115

Query  218  DQEVQNLSGGELQRVAIVLALGMPADIYVIDEPSA  252
             +    LSGG+ QRVAI  AL     + ++DEP+A
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.323    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00007302

Length=622
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  84.6    7e-20


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 84.6 bits (210),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 26/155 (17%)

Query  378  LGNFHLKIDAGSFTDSEIIVMMGENGTGKTTFCRMLAGAEKPD-GNVT------------  424
            L N  L ++ G     EI+ ++G NG GK+T  +++AG   P  G +             
Sbjct  1    LKNVSLTLNPG-----EILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERK  55

Query  425  MPRMHISMKPQKITPKFQGTVRQ-LFFKRIKAAFLSPQFQTDVYK-------PLKIDDFI  476
              R  I    Q      + TVR+ L    +       +      +           D  +
Sbjct  56   SLRKEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPV  115

Query  477  DQEVQNLSGGELQRVAIVLALGMPADIYVIDEPSA  511
             +    LSGG+ QRVAI  AL     + ++DEP+A
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 80.4 bits (199),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 32/168 (19%)

Query  109  SFKLHRLPMPRPGQVLGLVGTNGIGKSTALKILSGKLKPNLGR--YDNPPDWEEILRYFR  166
            S  L+      PG++L LVG NG GKST LK+++G L P  G    D     ++  +  R
Sbjct  5    SLTLN------PGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLR  58

Query  167  G--------SELQNYFTKVLEDNLKAVVKPQYVDQIPRAVKGPVKNVGELIKARSQMDNM  218
                      +L    T  + +NL+  +  + + +  +             +A  ++   
Sbjct  59   KEIGYVFQDPQLFPRLT--VRENLRLGLLLKGLSKREKDA--------RAEEALEKLGLG  108

Query  219  ERILDALELRQVQDRDIDHLSGGELQRFAIGLVCVQKADVYMFDEPSS  266
            +         +        LSGG+ QR AI    + K  + + DEP++
Sbjct  109  DL------ADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.322    0.139    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 792046840


Query= TCONS_00001697

Length=703
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  84.6    8e-20


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 84.6 bits (210),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 26/155 (17%)

Query  378  LGNFHLKIDAGSFTDSEIIVMMGENGTGKTTFCRMLAGAEKPD-GNVT------------  424
            L N  L ++ G     EI+ ++G NG GK+T  +++AG   P  G +             
Sbjct  1    LKNVSLTLNPG-----EILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERK  55

Query  425  MPRMHISMKPQKITPKFQGTVRQ-LFFKRIKAAFLSPQFQTDVYK-------PLKIDDFI  476
              R  I    Q      + TVR+ L    +       +      +           D  +
Sbjct  56   SLRKEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPV  115

Query  477  DQEVQNLSGGELQRVAIVLALGMPADIYVIDEPSA  511
             +    LSGG+ QRVAI  AL     + ++DEP+A
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 80.4 bits (199),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 32/168 (19%)

Query  109  SFKLHRLPMPRPGQVLGLVGTNGIGKSTALKILSGKLKPNLGR--YDNPPDWEEILRYFR  166
            S  L+      PG++L LVG NG GKST LK+++G L P  G    D     ++  +  R
Sbjct  5    SLTLN------PGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLR  58

Query  167  G--------SELQNYFTKVLEDNLKAVVKPQYVDQIPRAVKGPVKNVGELIKARSQMDNM  218
                      +L    T  + +NL+  +  + + +  +             +A  ++   
Sbjct  59   KEIGYVFQDPQLFPRLT--VRENLRLGLLLKGLSKREKDA--------RAEEALEKLGLG  108

Query  219  ERILDALELRQVQDRDIDHLSGGELQRFAIGLVCVQKADVYMFDEPSS  266
            +         +        LSGG+ QR AI    + K  + + DEP++
Sbjct  109  DL------ADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.322    0.139    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 899621900


Query= TCONS_00007303

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  83.9    1e-19


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 83.9 bits (208),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 26/155 (17%)

Query  262  LGNFHLKIDAGSFTDSEIIVMMGENGTGKTTFCRMLAGAEKPD-GNVT------------  308
            L N  L ++ G     EI+ ++G NG GK+T  +++AG   P  G +             
Sbjct  1    LKNVSLTLNPG-----EILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERK  55

Query  309  MPRMHISMKPQKITPKFQGTVRQ-LFFKRIKAAFLSPQFQTDVYK-------PLKIDDFI  360
              R  I    Q      + TVR+ L    +       +      +           D  +
Sbjct  56   SLRKEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPV  115

Query  361  DQEVQNLSGGELQRVAIVLALGMPADIYVIDEPSA  395
             +    LSGG+ QRVAI  AL     + ++DEP+A
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 79.6 bits (197),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 26/158 (16%)

Query  3    RPGQVLGLVGTNGIGKSTALKILSGKLKPNLGR--YDNPPDWEEILRYFRG--------S  52
             PG++L LVG NG GKST LK+++G L P  G    D     ++  +  R          
Sbjct  9    NPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIGYVFQDP  68

Query  53   ELQNYFTKVLEDNLKAVVKPQYVDQIPRAVKGPVKNVGELIKARSQMDNMERILDALELR  112
            +L    T  + +NL+  +  + + +  +             +A  ++   +         
Sbjct  69   QLFPRLT--VRENLRLGLLLKGLSKREKDA--------RAEEALEKLGLGDL------AD  112

Query  113  QVQDRDIDHLSGGELQRFAIGLVCVQKADVYMFDEPSS  150
            +        LSGG+ QR AI    + K  + + DEP++
Sbjct  113  RPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.322    0.139    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00001698

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463685 pfam12735, Trs65, TRAPP trafficking subunit Trs65. Thi...  367     4e-125


>CDD:463685 pfam12735, Trs65, TRAPP trafficking subunit Trs65.  This family 
is one of the subunits of the TRAPP Golgi trafficking complex. 
TRAPP subunits are found in two different sized complexes, 
TRAPP I and TRAPP II. While both complexes contain the 
same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p 
and Trs85p, with TRAPPC human equivalents, TRAPP II has 
the additional three subunits,Trs65p, Trs120p and Trs130p. 
While it has been implicated in cell wall biogenesis and stress 
response, the role of Trs65 in TRAPP II is supported by 
the findings that the protein co-localizes with Trs130p, and 
deletion of TRS65 in yeast leads to a conditional lethal phenotype 
if either one of the other TRAPP II-specific subunits 
is modified. Furthermore, the trs65 mutant has reduced Ypt31/32p 
guanine nucleotide exchange, GEF, activity.
Length=311

 Score = 367 bits (945),  Expect = 4e-125, Method: Composition-based stats.
 Identities = 147/290 (51%), Positives = 195/290 (67%), Gaps = 11/290 (4%)

Query  274  TPFLNCDVLFDKAELRLSDGKIETLSEDPGLKPPIICRPRDDVTLIYKLTPGYSQ-DSSL  332
            TPF +C+V+ DK +L LS G +E L++D GL  PI C P D +TL+YKLTP     DS+ 
Sbjct  1    TPFFDCEVVIDKIDLSLSGGTVEDLNQDAGLSLPIRCVPHDSLTLLYKLTPDQLDPDSNS  60

Query  333  STTVLVSVLDISLEAVIQVSDDCHPRILMQWRTNIDFSMILNPTFGGPSQA---LQRSNR  389
            ST      LDI++EA +QVS  C PRI M W T++DFS+ +NP FG PSQ+   +QRS+R
Sbjct  61   STKASSRPLDITIEATVQVSPGCTPRISMSWSTSLDFSLPINPGFGTPSQSSSLIQRSHR  120

Query  390  PVSLSVGQHQ------VNVLASGPPPSWSSLRDRASSITDMGVTISFTGPSRVEVGKPFS  443
            P  LS+          V+   + P    SS R R +S  D+G+T++F+GPS V+VG+ F+
Sbjct  121  PSQLSISSASPLSSPSVSRPDALPSLEASSNRTRETSSPDLGITLTFSGPSPVKVGEIFT  180

Query  444  WDVFIVNRSTIARKFAMVAIPRRKRADQRGHVTRPSSSSLSSLKGDG-VAEAVTDDNIVH  502
            W VFIVNRS  ARK A++ IP+R+R D R HV+RPSSSSLSS   D  VA+AV D+NI++
Sbjct  181  WKVFIVNRSDKARKLALIVIPKRRRNDVRNHVSRPSSSSLSSPADDELVADAVLDENILY  240

Query  503  AMQKTVAGQEAELICLSTEIRIGPLPPGTCYSTELKLLPLAVGPLHLEAV  552
            A+QK+     A +ICLS +IRIGPL PG CY  EL+ L L+ G L+LEAV
Sbjct  241  ALQKSSKVDTAGVICLSNDIRIGPLAPGACYEVELRFLALSEGVLNLEAV  290



Lambda      K        H        a         alpha
   0.318    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 687436880


Query= TCONS_00001699

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463685 pfam12735, Trs65, TRAPP trafficking subunit Trs65. Thi...  403     2e-139


>CDD:463685 pfam12735, Trs65, TRAPP trafficking subunit Trs65.  This family 
is one of the subunits of the TRAPP Golgi trafficking complex. 
TRAPP subunits are found in two different sized complexes, 
TRAPP I and TRAPP II. While both complexes contain the 
same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p 
and Trs85p, with TRAPPC human equivalents, TRAPP II has 
the additional three subunits,Trs65p, Trs120p and Trs130p. 
While it has been implicated in cell wall biogenesis and stress 
response, the role of Trs65 in TRAPP II is supported by 
the findings that the protein co-localizes with Trs130p, and 
deletion of TRS65 in yeast leads to a conditional lethal phenotype 
if either one of the other TRAPP II-specific subunits 
is modified. Furthermore, the trs65 mutant has reduced Ypt31/32p 
guanine nucleotide exchange, GEF, activity.
Length=311

 Score = 403 bits (1037),  Expect = 2e-139, Method: Composition-based stats.
 Identities = 160/311 (51%), Positives = 211/311 (68%), Gaps = 11/311 (4%)

Query  221  TPFLNCDVLFDKAELRLSDGKIETLSEDPGLKPPIICRPRDDVTLIYKLTPGYSQ-DSSL  279
            TPF +C+V+ DK +L LS G +E L++D GL  PI C P D +TL+YKLTP     DS+ 
Sbjct  1    TPFFDCEVVIDKIDLSLSGGTVEDLNQDAGLSLPIRCVPHDSLTLLYKLTPDQLDPDSNS  60

Query  280  STTVLVSVLDISLEAVIQVSDDCHPRILMQWRTNIDFSMILNPTFGGPSQA---LQRSNR  336
            ST      LDI++EA +QVS  C PRI M W T++DFS+ +NP FG PSQ+   +QRS+R
Sbjct  61   STKASSRPLDITIEATVQVSPGCTPRISMSWSTSLDFSLPINPGFGTPSQSSSLIQRSHR  120

Query  337  PVSLSVGQHQ------VNVLASGPPPSWSSLRDRASSITDMGVTISFTGPSRVEVGKPFS  390
            P  LS+          V+   + P    SS R R +S  D+G+T++F+GPS V+VG+ F+
Sbjct  121  PSQLSISSASPLSSPSVSRPDALPSLEASSNRTRETSSPDLGITLTFSGPSPVKVGEIFT  180

Query  391  WDVFIVNRSTIARKFAMVAIPRRKRADQRGHVTRPSSSSLSSLKGDG-VAEAVTDDNIVH  449
            W VFIVNRS  ARK A++ IP+R+R D R HV+RPSSSSLSS   D  VA+AV D+NI++
Sbjct  181  WKVFIVNRSDKARKLALIVIPKRRRNDVRNHVSRPSSSSLSSPADDELVADAVLDENILY  240

Query  450  AMQKTVAGQEAELICLSTEIRIGPLPPGTCYSTELKLLPLAVGPLHLEAVRLVDAHTNET  509
            A+QK+     A +ICLS +IRIGPL PG CY  EL+ L L+ G L+LEAVR+VD  TNE 
Sbjct  241  ALQKSSKVDTAGVICLSNDIRIGPLAPGACYEVELRFLALSEGVLNLEAVRVVDLGTNEH  300

Query  510  TDIRDLPDIVA  520
             DIRDLP++V 
Sbjct  301  VDIRDLPEVVV  311



Lambda      K        H        a         alpha
   0.318    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 664674974


Query= TCONS_00001700

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463685 pfam12735, Trs65, TRAPP trafficking subunit Trs65. Thi...  321     1e-107


>CDD:463685 pfam12735, Trs65, TRAPP trafficking subunit Trs65.  This family 
is one of the subunits of the TRAPP Golgi trafficking complex. 
TRAPP subunits are found in two different sized complexes, 
TRAPP I and TRAPP II. While both complexes contain the 
same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p 
and Trs85p, with TRAPPC human equivalents, TRAPP II has 
the additional three subunits,Trs65p, Trs120p and Trs130p. 
While it has been implicated in cell wall biogenesis and stress 
response, the role of Trs65 in TRAPP II is supported by 
the findings that the protein co-localizes with Trs130p, and 
deletion of TRS65 in yeast leads to a conditional lethal phenotype 
if either one of the other TRAPP II-specific subunits 
is modified. Furthermore, the trs65 mutant has reduced Ypt31/32p 
guanine nucleotide exchange, GEF, activity.
Length=311

 Score = 321 bits (826),  Expect = 1e-107, Method: Composition-based stats.
 Identities = 131/263 (50%), Positives = 176/263 (67%), Gaps = 11/263 (4%)

Query  274  TPFLNCDVLFDKAELRLSDGKIETLSEDPGLKPPIICRPRDDVTLIYKLTPGYSQ-DSSL  332
            TPF +C+V+ DK +L LS G +E L++D GL  PI C P D +TL+YKLTP     DS+ 
Sbjct  1    TPFFDCEVVIDKIDLSLSGGTVEDLNQDAGLSLPIRCVPHDSLTLLYKLTPDQLDPDSNS  60

Query  333  STTVLVSVLDISLEAVIQVSDDCHPRILMQWRTNIDFSMILNPTFGGPSQA---LQRSNR  389
            ST      LDI++EA +QVS  C PRI M W T++DFS+ +NP FG PSQ+   +QRS+R
Sbjct  61   STKASSRPLDITIEATVQVSPGCTPRISMSWSTSLDFSLPINPGFGTPSQSSSLIQRSHR  120

Query  390  PVSLSVGQHQ------VNVLASGPPPSWSSLRDRASSITDMGVTISFTGPSRVEVGKPFS  443
            P  LS+          V+   + P    SS R R +S  D+G+T++F+GPS V+VG+ F+
Sbjct  121  PSQLSISSASPLSSPSVSRPDALPSLEASSNRTRETSSPDLGITLTFSGPSPVKVGEIFT  180

Query  444  WDVFIVNRSTIARKFAMVAIPRRKRADQRGHVTRPSSSSLSSLKGDG-VAEAVTDDNIVH  502
            W VFIVNRS  ARK A++ IP+R+R D R HV+RPSSSSLSS   D  VA+AV D+NI++
Sbjct  181  WKVFIVNRSDKARKLALIVIPKRRRNDVRNHVSRPSSSSLSSPADDELVADAVLDENILY  240

Query  503  AMQKTVAGQEAELICLSTEIRIG  525
            A+QK+     A +ICLS +IRIG
Sbjct  241  ALQKSSKVDTAGVICLSNDIRIG  263



Lambda      K        H        a         alpha
   0.318    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00001701

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461182 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family. The 22-k...  58.7    2e-12


>CDD:461182 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family.  The 22-kDa peroxisomal 
membrane protein (PMP22) is a major component of peroxisomal 
membranes. PMP22 seems to be involved in pore forming 
activity and may contribute to the unspecific permeability 
of the organelle membrane. PMP22 is synthesized on free cytosolic 
ribosomes and then directed to the peroxisome membrane 
by specific targeting information. Mpv17 is a closely related 
peroxisomal protein. In mouse, the Mpv17 protein is involved 
in the development of early-onset glomerulosclerosis. 
More recently a homolog of Mpv17 in S. cerevisiae has been 
been found to be an integral membrane protein of the inner mitochondrial 
membrane where it has been proposed to have a role 
in ethanol metabolism and tolerance during heat-shock. Defects 
in MPV17 is associated with mitochondrial DNA depletion 
syndrome (MDDS) and Navajo neurohepatopathy (NNH). MDDS is 
a clinically heterogeneous group of disorders characterized 
by a reduction in mitochondrial DNA (mtDNA) copy number. Primary 
mtDNA depletion is inherited as an autosomal recessive 
trait and may affect single organs, typically muscle or liver, 
or multiple tissues. Individuals with the hepatocerebral 
form of mitochondrial DNA depletion syndrome have early progressive 
liver failure and neurologic abnormalities, hypoglycemia, 
and increased lactate in body fluids. NNH is an autosomal 
recessive disease that is prevalent among Navajo children 
in the South Western states of America. The major clinical 
features are hepatopathy, peripheral neuropathy, corneal 
anesthesia and scarring, acral mutilation, cerebral leukoencephalopathy, 
failure to thrive, and recurrent metabolic acidosis 
with intercurrent infections. Infantile, childhood, and 
classic forms of NNH have been described. Mitochondrial DNA 
depletion was detected in the livers of patients, suggesting 
a primary defect in mtDNA maintenance.
Length=62

 Score = 58.7 bits (143),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 19/48 (40%), Positives = 31/48 (65%), Gaps = 0/48 (0%)

Query  185  TVAEGGGKRALTRKFQDVYLPTLKANYVLWPAVQILNFRVVPIQFQIV  232
             + EG     +  K +  + PTLKAN+ +WP VQ +NFR VP+Q++++
Sbjct  1    GLLEGKSLEEIKEKLKRKFWPTLKANWKVWPPVQFINFRFVPLQYRVL  48



Lambda      K        H        a         alpha
   0.330    0.143    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00007304

Length=167
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461182 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family. The 22-k...  57.5    2e-12


>CDD:461182 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family.  The 22-kDa peroxisomal 
membrane protein (PMP22) is a major component of peroxisomal 
membranes. PMP22 seems to be involved in pore forming 
activity and may contribute to the unspecific permeability 
of the organelle membrane. PMP22 is synthesized on free cytosolic 
ribosomes and then directed to the peroxisome membrane 
by specific targeting information. Mpv17 is a closely related 
peroxisomal protein. In mouse, the Mpv17 protein is involved 
in the development of early-onset glomerulosclerosis. 
More recently a homolog of Mpv17 in S. cerevisiae has been 
been found to be an integral membrane protein of the inner mitochondrial 
membrane where it has been proposed to have a role 
in ethanol metabolism and tolerance during heat-shock. Defects 
in MPV17 is associated with mitochondrial DNA depletion 
syndrome (MDDS) and Navajo neurohepatopathy (NNH). MDDS is 
a clinically heterogeneous group of disorders characterized 
by a reduction in mitochondrial DNA (mtDNA) copy number. Primary 
mtDNA depletion is inherited as an autosomal recessive 
trait and may affect single organs, typically muscle or liver, 
or multiple tissues. Individuals with the hepatocerebral 
form of mitochondrial DNA depletion syndrome have early progressive 
liver failure and neurologic abnormalities, hypoglycemia, 
and increased lactate in body fluids. NNH is an autosomal 
recessive disease that is prevalent among Navajo children 
in the South Western states of America. The major clinical 
features are hepatopathy, peripheral neuropathy, corneal 
anesthesia and scarring, acral mutilation, cerebral leukoencephalopathy, 
failure to thrive, and recurrent metabolic acidosis 
with intercurrent infections. Infantile, childhood, and 
classic forms of NNH have been described. Mitochondrial DNA 
depletion was detected in the livers of patients, suggesting 
a primary defect in mtDNA maintenance.
Length=62

 Score = 57.5 bits (140),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 19/48 (40%), Positives = 31/48 (65%), Gaps = 0/48 (0%)

Query  87   TVAEGGGKRALTRKFQDVYLPTLKANYVLWPAVQILNFRVVPIQFQIV  134
             + EG     +  K +  + PTLKAN+ +WP VQ +NFR VP+Q++++
Sbjct  1    GLLEGKSLEEIKEKLKRKFWPTLKANWKVWPPVQFINFRFVPLQYRVL  48



Lambda      K        H        a         alpha
   0.330    0.143    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00007305

Length=583
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463685 pfam12735, Trs65, TRAPP trafficking subunit Trs65. Thi...  403     1e-138


>CDD:463685 pfam12735, Trs65, TRAPP trafficking subunit Trs65.  This family 
is one of the subunits of the TRAPP Golgi trafficking complex. 
TRAPP subunits are found in two different sized complexes, 
TRAPP I and TRAPP II. While both complexes contain the 
same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p 
and Trs85p, with TRAPPC human equivalents, TRAPP II has 
the additional three subunits,Trs65p, Trs120p and Trs130p. 
While it has been implicated in cell wall biogenesis and stress 
response, the role of Trs65 in TRAPP II is supported by 
the findings that the protein co-localizes with Trs130p, and 
deletion of TRS65 in yeast leads to a conditional lethal phenotype 
if either one of the other TRAPP II-specific subunits 
is modified. Furthermore, the trs65 mutant has reduced Ypt31/32p 
guanine nucleotide exchange, GEF, activity.
Length=311

 Score = 403 bits (1037),  Expect = 1e-138, Method: Composition-based stats.
 Identities = 160/311 (51%), Positives = 211/311 (68%), Gaps = 11/311 (4%)

Query  274  TPFLNCDVLFDKAELRLSDGKIETLSEDPGLKPPIICRPRDDVTLIYKLTPGYSQ-DSSL  332
            TPF +C+V+ DK +L LS G +E L++D GL  PI C P D +TL+YKLTP     DS+ 
Sbjct  1    TPFFDCEVVIDKIDLSLSGGTVEDLNQDAGLSLPIRCVPHDSLTLLYKLTPDQLDPDSNS  60

Query  333  STTVLVSVLDISLEAVIQVSDDCHPRILMQWRTNIDFSMILNPTFGGPSQA---LQRSNR  389
            ST      LDI++EA +QVS  C PRI M W T++DFS+ +NP FG PSQ+   +QRS+R
Sbjct  61   STKASSRPLDITIEATVQVSPGCTPRISMSWSTSLDFSLPINPGFGTPSQSSSLIQRSHR  120

Query  390  PVSLSVGQHQ------VNVLASGPPPSWSSLRDRASSITDMGVTISFTGPSRVEVGKPFS  443
            P  LS+          V+   + P    SS R R +S  D+G+T++F+GPS V+VG+ F+
Sbjct  121  PSQLSISSASPLSSPSVSRPDALPSLEASSNRTRETSSPDLGITLTFSGPSPVKVGEIFT  180

Query  444  WDVFIVNRSTIARKFAMVAIPRRKRADQRGHVTRPSSSSLSSLKGDG-VAEAVTDDNIVH  502
            W VFIVNRS  ARK A++ IP+R+R D R HV+RPSSSSLSS   D  VA+AV D+NI++
Sbjct  181  WKVFIVNRSDKARKLALIVIPKRRRNDVRNHVSRPSSSSLSSPADDELVADAVLDENILY  240

Query  503  AMQKTVAGQEAELICLSTEIRIGPLPPGTCYSTELKLLPLAVGPLHLEAVRLVDAHTNET  562
            A+QK+     A +ICLS +IRIGPL PG CY  EL+ L L+ G L+LEAVR+VD  TNE 
Sbjct  241  ALQKSSKVDTAGVICLSNDIRIGPLAPGACYEVELRFLALSEGVLNLEAVRVVDLGTNEH  300

Query  563  TDIRDLPDIVA  573
             DIRDLP++V 
Sbjct  301  VDIRDLPEVVV  311



Lambda      K        H        a         alpha
   0.318    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 733764148


Query= TCONS_00001703

Length=184
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463685 pfam12735, Trs65, TRAPP trafficking subunit Trs65. Thi...  252     1e-85


>CDD:463685 pfam12735, Trs65, TRAPP trafficking subunit Trs65.  This family 
is one of the subunits of the TRAPP Golgi trafficking complex. 
TRAPP subunits are found in two different sized complexes, 
TRAPP I and TRAPP II. While both complexes contain the 
same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p 
and Trs85p, with TRAPPC human equivalents, TRAPP II has 
the additional three subunits,Trs65p, Trs120p and Trs130p. 
While it has been implicated in cell wall biogenesis and stress 
response, the role of Trs65 in TRAPP II is supported by 
the findings that the protein co-localizes with Trs130p, and 
deletion of TRS65 in yeast leads to a conditional lethal phenotype 
if either one of the other TRAPP II-specific subunits 
is modified. Furthermore, the trs65 mutant has reduced Ypt31/32p 
guanine nucleotide exchange, GEF, activity.
Length=311

 Score = 252 bits (646),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 97/193 (50%), Positives = 131/193 (68%), Gaps = 10/193 (5%)

Query  1    MQWRTNIDFSMILNPTFGGPSQA---LQRSNRPVSLSVGQHQ------VNVLASGPPPSW  51
            M W T++DFS+ +NP FG PSQ+   +QRS+RP  LS+          V+   + P    
Sbjct  89   MSWSTSLDFSLPINPGFGTPSQSSSLIQRSHRPSQLSISSASPLSSPSVSRPDALPSLEA  148

Query  52   SSLRDRASSITDMGVTISFTGPSRVEVGKPFSWDVFIVNRSTIARKFAMVAIPRRKRADQ  111
            SS R R +S  D+G+T++F+GPS V+VG+ F+W VFIVNRS  ARK A++ IP+R+R D 
Sbjct  149  SSNRTRETSSPDLGITLTFSGPSPVKVGEIFTWKVFIVNRSDKARKLALIVIPKRRRNDV  208

Query  112  RGHVTRPSSSSLSSLKGDG-VAEAVTDDNIVHAMQKTVAGQEAELICLSTEIRIGPLPPG  170
            R HV+RPSSSSLSS   D  VA+AV D+NI++A+QK+     A +ICLS +IRIGPL PG
Sbjct  209  RNHVSRPSSSSLSSPADDELVADAVLDENILYALQKSSKVDTAGVICLSNDIRIGPLAPG  268

Query  171  TCYSTELKLLPLA  183
             CY  EL+ L L+
Sbjct  269  ACYEVELRFLALS  281



Lambda      K        H        a         alpha
   0.317    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0754    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00001702

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463685 pfam12735, Trs65, TRAPP trafficking subunit Trs65. Thi...  219     6e-73


>CDD:463685 pfam12735, Trs65, TRAPP trafficking subunit Trs65.  This family 
is one of the subunits of the TRAPP Golgi trafficking complex. 
TRAPP subunits are found in two different sized complexes, 
TRAPP I and TRAPP II. While both complexes contain the 
same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p 
and Trs85p, with TRAPPC human equivalents, TRAPP II has 
the additional three subunits,Trs65p, Trs120p and Trs130p. 
While it has been implicated in cell wall biogenesis and stress 
response, the role of Trs65 in TRAPP II is supported by 
the findings that the protein co-localizes with Trs130p, and 
deletion of TRS65 in yeast leads to a conditional lethal phenotype 
if either one of the other TRAPP II-specific subunits 
is modified. Furthermore, the trs65 mutant has reduced Ypt31/32p 
guanine nucleotide exchange, GEF, activity.
Length=311

 Score = 219 bits (561),  Expect = 6e-73, Method: Composition-based stats.
 Identities = 87/175 (50%), Positives = 119/175 (68%), Gaps = 10/175 (6%)

Query  1    MQWRTNIDFSMILNPTFGGPSQA---LQRSNRPVSLSVGQHQ------VNVLASGPPPSW  51
            M W T++DFS+ +NP FG PSQ+   +QRS+RP  LS+          V+   + P    
Sbjct  89   MSWSTSLDFSLPINPGFGTPSQSSSLIQRSHRPSQLSISSASPLSSPSVSRPDALPSLEA  148

Query  52   SSLRDRASSITDMGVTISFTGPSRVEVGKPFSWDVFIVNRSTIARKFAMVAIPRRKRADQ  111
            SS R R +S  D+G+T++F+GPS V+VG+ F+W VFIVNRS  ARK A++ IP+R+R D 
Sbjct  149  SSNRTRETSSPDLGITLTFSGPSPVKVGEIFTWKVFIVNRSDKARKLALIVIPKRRRNDV  208

Query  112  RGHVTRPSSSSLSSLKGDG-VAEAVTDDNIVHAMQKTVAGQEAELICLSTEIRIG  165
            R HV+RPSSSSLSS   D  VA+AV D+NI++A+QK+     A +ICLS +IRIG
Sbjct  209  RNHVSRPSSSSLSSPADDELVADAVLDENILYALQKSSKVDTAGVICLSNDIRIG  263



Lambda      K        H        a         alpha
   0.317    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00001704

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463685 pfam12735, Trs65, TRAPP trafficking subunit Trs65. Thi...  402     7e-139


>CDD:463685 pfam12735, Trs65, TRAPP trafficking subunit Trs65.  This family 
is one of the subunits of the TRAPP Golgi trafficking complex. 
TRAPP subunits are found in two different sized complexes, 
TRAPP I and TRAPP II. While both complexes contain the 
same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p 
and Trs85p, with TRAPPC human equivalents, TRAPP II has 
the additional three subunits,Trs65p, Trs120p and Trs130p. 
While it has been implicated in cell wall biogenesis and stress 
response, the role of Trs65 in TRAPP II is supported by 
the findings that the protein co-localizes with Trs130p, and 
deletion of TRS65 in yeast leads to a conditional lethal phenotype 
if either one of the other TRAPP II-specific subunits 
is modified. Furthermore, the trs65 mutant has reduced Ypt31/32p 
guanine nucleotide exchange, GEF, activity.
Length=311

 Score = 402 bits (1036),  Expect = 7e-139, Method: Composition-based stats.
 Identities = 160/311 (51%), Positives = 211/311 (68%), Gaps = 11/311 (4%)

Query  240  TPFLNCDVLFDKAELRLSDGKIETLSEDPGLKPPIICRPRDDVTLIYKLTPGYSQ-DSSL  298
            TPF +C+V+ DK +L LS G +E L++D GL  PI C P D +TL+YKLTP     DS+ 
Sbjct  1    TPFFDCEVVIDKIDLSLSGGTVEDLNQDAGLSLPIRCVPHDSLTLLYKLTPDQLDPDSNS  60

Query  299  STTVLVSVLDISLEAVIQVSDDCHPRILMQWRTNIDFSMILNPTFGGPSQA---LQRSNR  355
            ST      LDI++EA +QVS  C PRI M W T++DFS+ +NP FG PSQ+   +QRS+R
Sbjct  61   STKASSRPLDITIEATVQVSPGCTPRISMSWSTSLDFSLPINPGFGTPSQSSSLIQRSHR  120

Query  356  PVSLSVGQHQ------VNVLASGPPPSWSSLRDRASSITDMGVTISFTGPSRVEVGKPFS  409
            P  LS+          V+   + P    SS R R +S  D+G+T++F+GPS V+VG+ F+
Sbjct  121  PSQLSISSASPLSSPSVSRPDALPSLEASSNRTRETSSPDLGITLTFSGPSPVKVGEIFT  180

Query  410  WDVFIVNRSTIARKFAMVAIPRRKRADQRGHVTRPSSSSLSSLKGDG-VAEAVTDDNIVH  468
            W VFIVNRS  ARK A++ IP+R+R D R HV+RPSSSSLSS   D  VA+AV D+NI++
Sbjct  181  WKVFIVNRSDKARKLALIVIPKRRRNDVRNHVSRPSSSSLSSPADDELVADAVLDENILY  240

Query  469  AMQKTVAGQEAELICLSTEIRIGPLPPGTCYSTELKLLPLAVGPLHLEAVRLVDAHTNET  528
            A+QK+     A +ICLS +IRIGPL PG CY  EL+ L L+ G L+LEAVR+VD  TNE 
Sbjct  241  ALQKSSKVDTAGVICLSNDIRIGPLAPGACYEVELRFLALSEGVLNLEAVRVVDLGTNEH  300

Query  529  TDIRDLPDIVA  539
             DIRDLP++V 
Sbjct  301  VDIRDLPEVVV  311



Lambda      K        H        a         alpha
   0.317    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00001705

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461182 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family. The 22-k...  61.7    1e-13


>CDD:461182 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family.  The 22-kDa peroxisomal 
membrane protein (PMP22) is a major component of peroxisomal 
membranes. PMP22 seems to be involved in pore forming 
activity and may contribute to the unspecific permeability 
of the organelle membrane. PMP22 is synthesized on free cytosolic 
ribosomes and then directed to the peroxisome membrane 
by specific targeting information. Mpv17 is a closely related 
peroxisomal protein. In mouse, the Mpv17 protein is involved 
in the development of early-onset glomerulosclerosis. 
More recently a homolog of Mpv17 in S. cerevisiae has been 
been found to be an integral membrane protein of the inner mitochondrial 
membrane where it has been proposed to have a role 
in ethanol metabolism and tolerance during heat-shock. Defects 
in MPV17 is associated with mitochondrial DNA depletion 
syndrome (MDDS) and Navajo neurohepatopathy (NNH). MDDS is 
a clinically heterogeneous group of disorders characterized 
by a reduction in mitochondrial DNA (mtDNA) copy number. Primary 
mtDNA depletion is inherited as an autosomal recessive 
trait and may affect single organs, typically muscle or liver, 
or multiple tissues. Individuals with the hepatocerebral 
form of mitochondrial DNA depletion syndrome have early progressive 
liver failure and neurologic abnormalities, hypoglycemia, 
and increased lactate in body fluids. NNH is an autosomal 
recessive disease that is prevalent among Navajo children 
in the South Western states of America. The major clinical 
features are hepatopathy, peripheral neuropathy, corneal 
anesthesia and scarring, acral mutilation, cerebral leukoencephalopathy, 
failure to thrive, and recurrent metabolic acidosis 
with intercurrent infections. Infantile, childhood, and 
classic forms of NNH have been described. Mitochondrial DNA 
depletion was detected in the livers of patients, suggesting 
a primary defect in mtDNA maintenance.
Length=62

 Score = 61.7 bits (151),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 20/49 (41%), Positives = 31/49 (63%), Gaps = 0/49 (0%)

Query  185  TVAEGGGKRALTRKFQDVYLPTLKANYVLWPAVQILNFRVVPIQFQIPF  233
             + EG     +  K +  + PTLKAN+ +WP VQ +NFR VP+Q+++ F
Sbjct  1    GLLEGKSLEEIKEKLKRKFWPTLKANWKVWPPVQFINFRFVPLQYRVLF  49



Lambda      K        H        a         alpha
   0.330    0.144    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00001706

Length=644
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463047 pfam10300, DUF3808, Protein of unknown function (DUF38...  476     3e-164


>CDD:463047 pfam10300, DUF3808, Protein of unknown function (DUF3808).  This 
is a family of proteins conserved from fungi to humans. 
Members of this family also carry a TPR_2 domain pfam07719 at 
their C-terminus.
Length=469

 Score = 476 bits (1228),  Expect = 3e-164, Method: Composition-based stats.
 Identities = 162/523 (31%), Positives = 226/523 (43%), Gaps = 106/523 (20%)

Query  1    MRQASERLNEAETSASVDQHRAQHNSYAPNTYHSPMYLPGTEFALCQAIAQLMSAIVGVL  60
            ++QASE L EAE      + +AQ N    NT  S +Y PGT   +C A   L+ A +   
Sbjct  50   IQQASEALKEAEQVCQRFRKKAQVNESIQNTDTSQLYEPGTHAEVCYAECLLLKAALTFQ  109

Query  61   NESLTESIKAFYRLRKAYITLDAILKMEQKYMEESRAATLVESTTSGSVPSSLRHSSSNL  120
            +ESL   IK  Y+LRKAY      LK+     +  R                        
Sbjct  110  DESLVSFIKGGYKLRKAYQIYKECLKLINDPQQTKR------------------------  145

Query  121  HSSSSSISSAKGKEAAADTLAAPSNDTDVQERLADLNLSGEPAVAEDPGQTPTPINTDIL  180
                                                                   ++   
Sbjct  146  -------------------------------------------------------SSPGD  150

Query  181  DHDPDSDIFQNQIDVFVHSGSNFCFGVLLLLISMVPPSFSKLLSIIGFHGDKERGLKMLW  240
                 +D  Q +ID F  SG N  FG+  L++S++PP   KLL  IGF GD+E GL++LW
Sbjct  151  SSLSHNDNNQAEIDEFFESGVNLGFGIFNLMLSLLPPRILKLLEFIGFSGDREDGLRLLW  210

Query  241  QASKFHNLIGGIAAFAILGYYNGFVRYCDIMPDSIPGKDGDVQGYPQKRLELLLAKMRER  300
            +ASK  N+   +A   +L YY G  +   I               P +  E LL   R+R
Sbjct  211  EASKSPNIRAALALLTLLFYYTGVRQVLGI----------PGGEGPLEEAEALLLPYRKR  260

Query  301  FPKSQLWLLEESRMSGANKNLDRALELL--CGEERSPLKQVEALRVFERSLNAMYLHKYE  358
            +P   LWL  E+R+     NLD ALEL   C E +S  KQV  L  +E     ++LH ++
Sbjct  261  YPNGALWLFFEARIESLKGNLDEALELFEECIESQSEWKQVHHLCYWELMWCLVFLHNWK  320

Query  359  LCADSFLECVDLNSWSRSLYYYIAGSCHLSLYRDAKETDSAKAAKHAELAEKYFRMAPTV  418
              A+ FL  V  +SWS +LY Y A +C L LYR+       +A    E A + FR  PT+
Sbjct  321  QAANYFLLLVKESSWSHALYTYFAAACLLMLYRE------EEAPAAKERAVELFREVPTL  374

Query  419  AGKKRFMARQLPFDVFVARKFAKWEARAKEWKVSLVDAVGVDPIEEMIFFWNGHSRMTDE  478
              K     + LP + F ARK  +++AR         DAV V P+ E+I+FWNG SRM  +
Sbjct  375  KQKIAG--KSLPLEKFAARKVQRFKARTP------ADAVLVSPLLELIYFWNGFSRMGKK  426

Query  479  QLQ-ESLQKLAWSESSANTTWSREGPEEKAILKLLRAAVHRSL  520
             L  ES+ KL      AN T   + P++K + +LL+    R L
Sbjct  427  PLLTESVLKLIEKALKANPTSEAQEPDDKCLKQLLKGLCLRHL  469



Lambda      K        H        a         alpha
   0.317    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 812609290


Query= TCONS_00001707

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461182 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family. The 22-k...  57.9    8e-14


>CDD:461182 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family.  The 22-kDa peroxisomal 
membrane protein (PMP22) is a major component of peroxisomal 
membranes. PMP22 seems to be involved in pore forming 
activity and may contribute to the unspecific permeability 
of the organelle membrane. PMP22 is synthesized on free cytosolic 
ribosomes and then directed to the peroxisome membrane 
by specific targeting information. Mpv17 is a closely related 
peroxisomal protein. In mouse, the Mpv17 protein is involved 
in the development of early-onset glomerulosclerosis. 
More recently a homolog of Mpv17 in S. cerevisiae has been 
been found to be an integral membrane protein of the inner mitochondrial 
membrane where it has been proposed to have a role 
in ethanol metabolism and tolerance during heat-shock. Defects 
in MPV17 is associated with mitochondrial DNA depletion 
syndrome (MDDS) and Navajo neurohepatopathy (NNH). MDDS is 
a clinically heterogeneous group of disorders characterized 
by a reduction in mitochondrial DNA (mtDNA) copy number. Primary 
mtDNA depletion is inherited as an autosomal recessive 
trait and may affect single organs, typically muscle or liver, 
or multiple tissues. Individuals with the hepatocerebral 
form of mitochondrial DNA depletion syndrome have early progressive 
liver failure and neurologic abnormalities, hypoglycemia, 
and increased lactate in body fluids. NNH is an autosomal 
recessive disease that is prevalent among Navajo children 
in the South Western states of America. The major clinical 
features are hepatopathy, peripheral neuropathy, corneal 
anesthesia and scarring, acral mutilation, cerebral leukoencephalopathy, 
failure to thrive, and recurrent metabolic acidosis 
with intercurrent infections. Infantile, childhood, and 
classic forms of NNH have been described. Mitochondrial DNA 
depletion was detected in the livers of patients, suggesting 
a primary defect in mtDNA maintenance.
Length=62

 Score = 57.9 bits (141),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 19/48 (40%), Positives = 31/48 (65%), Gaps = 0/48 (0%)

Query  2   TVAEGGGKRALTRKFQDVYLPTLKANYVLWPAVQILNFRVVPIQFQIV  49
            + EG     +  K +  + PTLKAN+ +WP VQ +NFR VP+Q++++
Sbjct  1   GLLEGKSLEEIKEKLKRKFWPTLKANWKVWPPVQFINFRFVPLQYRVL  48



Lambda      K        H        a         alpha
   0.328    0.140    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00007307

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461182 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family. The 22-k...  79.8    3e-21


>CDD:461182 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family.  The 22-kDa peroxisomal 
membrane protein (PMP22) is a major component of peroxisomal 
membranes. PMP22 seems to be involved in pore forming 
activity and may contribute to the unspecific permeability 
of the organelle membrane. PMP22 is synthesized on free cytosolic 
ribosomes and then directed to the peroxisome membrane 
by specific targeting information. Mpv17 is a closely related 
peroxisomal protein. In mouse, the Mpv17 protein is involved 
in the development of early-onset glomerulosclerosis. 
More recently a homolog of Mpv17 in S. cerevisiae has been 
been found to be an integral membrane protein of the inner mitochondrial 
membrane where it has been proposed to have a role 
in ethanol metabolism and tolerance during heat-shock. Defects 
in MPV17 is associated with mitochondrial DNA depletion 
syndrome (MDDS) and Navajo neurohepatopathy (NNH). MDDS is 
a clinically heterogeneous group of disorders characterized 
by a reduction in mitochondrial DNA (mtDNA) copy number. Primary 
mtDNA depletion is inherited as an autosomal recessive 
trait and may affect single organs, typically muscle or liver, 
or multiple tissues. Individuals with the hepatocerebral 
form of mitochondrial DNA depletion syndrome have early progressive 
liver failure and neurologic abnormalities, hypoglycemia, 
and increased lactate in body fluids. NNH is an autosomal 
recessive disease that is prevalent among Navajo children 
in the South Western states of America. The major clinical 
features are hepatopathy, peripheral neuropathy, corneal 
anesthesia and scarring, acral mutilation, cerebral leukoencephalopathy, 
failure to thrive, and recurrent metabolic acidosis 
with intercurrent infections. Infantile, childhood, and 
classic forms of NNH have been described. Mitochondrial DNA 
depletion was detected in the livers of patients, suggesting 
a primary defect in mtDNA maintenance.
Length=62

 Score = 79.8 bits (198),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 26/62 (42%), Positives = 39/62 (63%), Gaps = 0/62 (0%)

Query  87   TVAEGGGKRALTRKFQDVYLPTLKANYVLWPAVQILNFRVVPIQFQIPFVSSVGIAWTAY  146
             + EG     +  K +  + PTLKAN+ +WP VQ +NFR VP+Q+++ FV+ V + W  Y
Sbjct  1    GLLEGKSLEEIKEKLKRKFWPTLKANWKVWPPVQFINFRFVPLQYRVLFVNVVSLFWNTY  60

Query  147  LS  148
            LS
Sbjct  61   LS  62



Lambda      K        H        a         alpha
   0.327    0.142    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00001708

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425495 pfam00162, PGK, Phosphoglycerate kinase                    580     0.0  


>CDD:425495 pfam00162, PGK, Phosphoglycerate kinase.  
Length=370

 Score = 580 bits (1497),  Expect = 0.0, Method: Composition-based stats.
 Identities = 215/392 (55%), Positives = 271/392 (69%), Gaps = 23/392 (6%)

Query  16   DKRVLIRVDFNVPLNEKKEVTNPQRIVGALPTIKYAIEQGAKAVVLMSHLGRPDGKKNPK  75
             KRVL+RVDFNVPL++  ++T+  RI  ALPTIKY +E+GAK V+LMSHLGRP GK   K
Sbjct  1    GKRVLVRVDFNVPLDDDGKITDDTRIRAALPTIKYLLEKGAK-VILMSHLGRPKGKD-DK  58

Query  76   YSLKPVVPELEKLLGKSVIFTEDCVGKEVEETVNKASGGQVILLENLRFHPEEEGSYKDE  135
            +SLKPV   L +LLGK V F +DC+G E E  +     G+V+LLEN+RF+ EEE      
Sbjct  59   FSLKPVAERLSELLGKPVKFADDCIGPEAEAAIAALKPGEVLLLENVRFYKEEE------  112

Query  136  EGKKVKADKEKVAEFRKGLTALGDIYINDAFGTAHRAHSSMVGV-DLPQKASGFLVKKEL  194
                 K D E    F K L +L D+Y+NDAFGTAHRAH+S VGV      A+GFL++KEL
Sbjct  113  -----KNDPE----FAKKLASLADVYVNDAFGTAHRAHASTVGVAKFLPSAAGFLMEKEL  163

Query  195  EYFAKALESPSRPFLAILGGSKVSDKIQLIDNLLPKVNSLIITGGMAFTFKKTLENVKIG  254
            E  +KALE+P RPF+AILGG+KVSDKI +I+NLL KV+ LII GGMA TF K  +  +IG
Sbjct  164  EALSKALENPERPFVAILGGAKVSDKIGVIENLLDKVDKLIIGGGMANTFLKA-QGYEIG  222

Query  255  NSLFDEAGSKTVGDIIEKAKKNNVKIVLPVDYITADKFSADAKTGYATDEEGIPDGYMGL  314
             SL +E   +   +++EKAK   VKIVLPVD + AD+FSA+ K     D + IPD +MGL
Sbjct  223  KSLVEEDKIELAKELLEKAKAKGVKIVLPVDVVVADEFSAEGKV---VDVDEIPDDWMGL  279

Query  315  DVGDKSVKLYKETIAEAKTILWNGPPGVFEMEPFANGTKQTLDAAVDAAKNGAIVIIGGG  374
            D+G ++++L+ E I +AKTI+WNGP GVFE E FA GTK    A  +A   GA  I+GGG
Sbjct  280  DIGPETIELFAEVIKKAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEATA-GAFSIVGGG  338

Query  375  DTATVAAKYGAEEKLSHVSTGGGASLELLEGK  406
            DTA    K G  +K SH+STGGGASLE LEGK
Sbjct  339  DTAAAVEKLGLADKFSHISTGGGASLEFLEGK  370



Lambda      K        H        a         alpha
   0.312    0.133    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00007308

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425495 pfam00162, PGK, Phosphoglycerate kinase                    341     2e-118


>CDD:425495 pfam00162, PGK, Phosphoglycerate kinase.  
Length=370

 Score = 341 bits (877),  Expect = 2e-118, Method: Composition-based stats.
 Identities = 128/232 (55%), Positives = 162/232 (70%), Gaps = 6/232 (3%)

Query  1    MVGV-DLPQKASGFLVKKELEYFAKALESPSRPFLAILGGSKVSDKIQLIDNLLPKVNSL  59
             VGV      A+GFL++KELE  +KALE+P RPF+AILGG+KVSDKI +I+NLL KV+ L
Sbjct  144  TVGVAKFLPSAAGFLMEKELEALSKALENPERPFVAILGGAKVSDKIGVIENLLDKVDKL  203

Query  60   IITGGMAFTFKKTLENVKIGNSLFDEAGSKTVGDIIEKAKKNNVKIVLPVDYITADKFSA  119
            II GGMA TF K  +  +IG SL +E   +   +++EKAK   VKIVLPVD + AD+FSA
Sbjct  204  IIGGGMANTFLKA-QGYEIGKSLVEEDKIELAKELLEKAKAKGVKIVLPVDVVVADEFSA  262

Query  120  DAKTGYATDEEGIPDGYMGLDVGDKSVKLYKETIAEAKTILWNGPPGVFEMEPFANGTKQ  179
            + K     D + IPD +MGLD+G ++++L+ E I +AKTI+WNGP GVFE E FA GTK 
Sbjct  263  EGKV---VDVDEIPDDWMGLDIGPETIELFAEVIKKAKTIVWNGPMGVFEFENFAKGTKA  319

Query  180  TLDAAVDAAKNGAIVIIGGGDTATVAAKYGAEEKLSHVSTGGGASLELLEGK  231
               A  +A   GA  I+GGGDTA    K G  +K SH+STGGGASLE LEGK
Sbjct  320  VAKAIAEATA-GAFSIVGGGDTAAAVEKLGLADKFSHISTGGGASLEFLEGK  370



Lambda      K        H        a         alpha
   0.313    0.134    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00001709

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425495 pfam00162, PGK, Phosphoglycerate kinase                    580     0.0  


>CDD:425495 pfam00162, PGK, Phosphoglycerate kinase.  
Length=370

 Score = 580 bits (1497),  Expect = 0.0, Method: Composition-based stats.
 Identities = 215/392 (55%), Positives = 271/392 (69%), Gaps = 23/392 (6%)

Query  16   DKRVLIRVDFNVPLNEKKEVTNPQRIVGALPTIKYAIEQGAKAVVLMSHLGRPDGKKNPK  75
             KRVL+RVDFNVPL++  ++T+  RI  ALPTIKY +E+GAK V+LMSHLGRP GK   K
Sbjct  1    GKRVLVRVDFNVPLDDDGKITDDTRIRAALPTIKYLLEKGAK-VILMSHLGRPKGKD-DK  58

Query  76   YSLKPVVPELEKLLGKSVIFTEDCVGKEVEETVNKASGGQVILLENLRFHPEEEGSYKDE  135
            +SLKPV   L +LLGK V F +DC+G E E  +     G+V+LLEN+RF+ EEE      
Sbjct  59   FSLKPVAERLSELLGKPVKFADDCIGPEAEAAIAALKPGEVLLLENVRFYKEEE------  112

Query  136  EGKKVKADKEKVAEFRKGLTALGDIYINDAFGTAHRAHSSMVGV-DLPQKASGFLVKKEL  194
                 K D E    F K L +L D+Y+NDAFGTAHRAH+S VGV      A+GFL++KEL
Sbjct  113  -----KNDPE----FAKKLASLADVYVNDAFGTAHRAHASTVGVAKFLPSAAGFLMEKEL  163

Query  195  EYFAKALESPSRPFLAILGGSKVSDKIQLIDNLLPKVNSLIITGGMAFTFKKTLENVKIG  254
            E  +KALE+P RPF+AILGG+KVSDKI +I+NLL KV+ LII GGMA TF K  +  +IG
Sbjct  164  EALSKALENPERPFVAILGGAKVSDKIGVIENLLDKVDKLIIGGGMANTFLKA-QGYEIG  222

Query  255  NSLFDEAGSKTVGDIIEKAKKNNVKIVLPVDYITADKFSADAKTGYATDEEGIPDGYMGL  314
             SL +E   +   +++EKAK   VKIVLPVD + AD+FSA+ K     D + IPD +MGL
Sbjct  223  KSLVEEDKIELAKELLEKAKAKGVKIVLPVDVVVADEFSAEGKV---VDVDEIPDDWMGL  279

Query  315  DVGDKSVKLYKETIAEAKTILWNGPPGVFEMEPFANGTKQTLDAAVDAAKNGAIVIIGGG  374
            D+G ++++L+ E I +AKTI+WNGP GVFE E FA GTK    A  +A   GA  I+GGG
Sbjct  280  DIGPETIELFAEVIKKAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEATA-GAFSIVGGG  338

Query  375  DTATVAAKYGAEEKLSHVSTGGGASLELLEGK  406
            DTA    K G  +K SH+STGGGASLE LEGK
Sbjct  339  DTAAAVEKLGLADKFSHISTGGGASLEFLEGK  370



Lambda      K        H        a         alpha
   0.312    0.133    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00007309

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425495 pfam00162, PGK, Phosphoglycerate kinase                    580     0.0  


>CDD:425495 pfam00162, PGK, Phosphoglycerate kinase.  
Length=370

 Score = 580 bits (1497),  Expect = 0.0, Method: Composition-based stats.
 Identities = 215/392 (55%), Positives = 271/392 (69%), Gaps = 23/392 (6%)

Query  16   DKRVLIRVDFNVPLNEKKEVTNPQRIVGALPTIKYAIEQGAKAVVLMSHLGRPDGKKNPK  75
             KRVL+RVDFNVPL++  ++T+  RI  ALPTIKY +E+GAK V+LMSHLGRP GK   K
Sbjct  1    GKRVLVRVDFNVPLDDDGKITDDTRIRAALPTIKYLLEKGAK-VILMSHLGRPKGKD-DK  58

Query  76   YSLKPVVPELEKLLGKSVIFTEDCVGKEVEETVNKASGGQVILLENLRFHPEEEGSYKDE  135
            +SLKPV   L +LLGK V F +DC+G E E  +     G+V+LLEN+RF+ EEE      
Sbjct  59   FSLKPVAERLSELLGKPVKFADDCIGPEAEAAIAALKPGEVLLLENVRFYKEEE------  112

Query  136  EGKKVKADKEKVAEFRKGLTALGDIYINDAFGTAHRAHSSMVGV-DLPQKASGFLVKKEL  194
                 K D E    F K L +L D+Y+NDAFGTAHRAH+S VGV      A+GFL++KEL
Sbjct  113  -----KNDPE----FAKKLASLADVYVNDAFGTAHRAHASTVGVAKFLPSAAGFLMEKEL  163

Query  195  EYFAKALESPSRPFLAILGGSKVSDKIQLIDNLLPKVNSLIITGGMAFTFKKTLENVKIG  254
            E  +KALE+P RPF+AILGG+KVSDKI +I+NLL KV+ LII GGMA TF K  +  +IG
Sbjct  164  EALSKALENPERPFVAILGGAKVSDKIGVIENLLDKVDKLIIGGGMANTFLKA-QGYEIG  222

Query  255  NSLFDEAGSKTVGDIIEKAKKNNVKIVLPVDYITADKFSADAKTGYATDEEGIPDGYMGL  314
             SL +E   +   +++EKAK   VKIVLPVD + AD+FSA+ K     D + IPD +MGL
Sbjct  223  KSLVEEDKIELAKELLEKAKAKGVKIVLPVDVVVADEFSAEGKV---VDVDEIPDDWMGL  279

Query  315  DVGDKSVKLYKETIAEAKTILWNGPPGVFEMEPFANGTKQTLDAAVDAAKNGAIVIIGGG  374
            D+G ++++L+ E I +AKTI+WNGP GVFE E FA GTK    A  +A   GA  I+GGG
Sbjct  280  DIGPETIELFAEVIKKAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEATA-GAFSIVGGG  338

Query  375  DTATVAAKYGAEEKLSHVSTGGGASLELLEGK  406
            DTA    K G  +K SH+STGGGASLE LEGK
Sbjct  339  DTAAAVEKLGLADKFSHISTGGGASLEFLEGK  370



Lambda      K        H        a         alpha
   0.312    0.133    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00007310

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425495 pfam00162, PGK, Phosphoglycerate kinase                    580     0.0  


>CDD:425495 pfam00162, PGK, Phosphoglycerate kinase.  
Length=370

 Score = 580 bits (1497),  Expect = 0.0, Method: Composition-based stats.
 Identities = 215/392 (55%), Positives = 271/392 (69%), Gaps = 23/392 (6%)

Query  16   DKRVLIRVDFNVPLNEKKEVTNPQRIVGALPTIKYAIEQGAKAVVLMSHLGRPDGKKNPK  75
             KRVL+RVDFNVPL++  ++T+  RI  ALPTIKY +E+GAK V+LMSHLGRP GK   K
Sbjct  1    GKRVLVRVDFNVPLDDDGKITDDTRIRAALPTIKYLLEKGAK-VILMSHLGRPKGKD-DK  58

Query  76   YSLKPVVPELEKLLGKSVIFTEDCVGKEVEETVNKASGGQVILLENLRFHPEEEGSYKDE  135
            +SLKPV   L +LLGK V F +DC+G E E  +     G+V+LLEN+RF+ EEE      
Sbjct  59   FSLKPVAERLSELLGKPVKFADDCIGPEAEAAIAALKPGEVLLLENVRFYKEEE------  112

Query  136  EGKKVKADKEKVAEFRKGLTALGDIYINDAFGTAHRAHSSMVGV-DLPQKASGFLVKKEL  194
                 K D E    F K L +L D+Y+NDAFGTAHRAH+S VGV      A+GFL++KEL
Sbjct  113  -----KNDPE----FAKKLASLADVYVNDAFGTAHRAHASTVGVAKFLPSAAGFLMEKEL  163

Query  195  EYFAKALESPSRPFLAILGGSKVSDKIQLIDNLLPKVNSLIITGGMAFTFKKTLENVKIG  254
            E  +KALE+P RPF+AILGG+KVSDKI +I+NLL KV+ LII GGMA TF K  +  +IG
Sbjct  164  EALSKALENPERPFVAILGGAKVSDKIGVIENLLDKVDKLIIGGGMANTFLKA-QGYEIG  222

Query  255  NSLFDEAGSKTVGDIIEKAKKNNVKIVLPVDYITADKFSADAKTGYATDEEGIPDGYMGL  314
             SL +E   +   +++EKAK   VKIVLPVD + AD+FSA+ K     D + IPD +MGL
Sbjct  223  KSLVEEDKIELAKELLEKAKAKGVKIVLPVDVVVADEFSAEGKV---VDVDEIPDDWMGL  279

Query  315  DVGDKSVKLYKETIAEAKTILWNGPPGVFEMEPFANGTKQTLDAAVDAAKNGAIVIIGGG  374
            D+G ++++L+ E I +AKTI+WNGP GVFE E FA GTK    A  +A   GA  I+GGG
Sbjct  280  DIGPETIELFAEVIKKAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEATA-GAFSIVGGG  338

Query  375  DTATVAAKYGAEEKLSHVSTGGGASLELLEGK  406
            DTA    K G  +K SH+STGGGASLE LEGK
Sbjct  339  DTAAAVEKLGLADKFSHISTGGGASLEFLEGK  370



Lambda      K        H        a         alpha
   0.312    0.133    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00007311

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425495 pfam00162, PGK, Phosphoglycerate kinase                    576     0.0  


>CDD:425495 pfam00162, PGK, Phosphoglycerate kinase.  
Length=370

 Score = 576 bits (1488),  Expect = 0.0, Method: Composition-based stats.
 Identities = 214/392 (55%), Positives = 271/392 (69%), Gaps = 23/392 (6%)

Query  16   DKRVLIRVDFNVPLNEKKEVTNPQRIVGALPTIKYAIEQGAKAVVLMSHLGRPDGKKNPK  75
             KRVL+RVDFNVPL++  ++T+  RI  ALPTIKY +E+GAK V+LMSHLGRP GK   K
Sbjct  1    GKRVLVRVDFNVPLDDDGKITDDTRIRAALPTIKYLLEKGAK-VILMSHLGRPKGKD-DK  58

Query  76   YSLKPVVPELEKLLGKSVIFTEDCVGKEVEETVNKASGGQVILLENLRFHPEEEGSYKDE  135
            +SLKPV   L +LLGK V F +DC+G E E  +     G+V+LLEN+RF+ EEE      
Sbjct  59   FSLKPVAERLSELLGKPVKFADDCIGPEAEAAIAALKPGEVLLLENVRFYKEEE------  112

Query  136  EGKKVKADKEKVAEFRKGLTALGDIYISDAFGTAHRAHSSMVGV-DLPQKASGFLVKKEL  194
                 K D E    F K L +L D+Y++DAFGTAHRAH+S VGV      A+GFL++KEL
Sbjct  113  -----KNDPE----FAKKLASLADVYVNDAFGTAHRAHASTVGVAKFLPSAAGFLMEKEL  163

Query  195  EYFAKALESPSRPFLAILGGSKVSDKIQLIDNLLPKVNSLIITGGMAFTFKKTLENVKIG  254
            E  +KALE+P RPF+AILGG+KVSDKI +I+NLL KV+ LII GGMA TF K  +  +IG
Sbjct  164  EALSKALENPERPFVAILGGAKVSDKIGVIENLLDKVDKLIIGGGMANTFLKA-QGYEIG  222

Query  255  NSLFDEAGSKTVGDIIEKAKKNNVKIVLPVDYITADKFSADAKTGYATDEEGIPDGYMGL  314
             SL +E   +   +++EKAK   VKIVLPVD + AD+FSA+ K     D + IPD +MGL
Sbjct  223  KSLVEEDKIELAKELLEKAKAKGVKIVLPVDVVVADEFSAEGKV---VDVDEIPDDWMGL  279

Query  315  DVGDKSVKLYKETIAEAKTILWNGPPGVFEMEPFANGTKQTLDAAVDAAKNGAIVIIGGG  374
            D+G ++++L+ E I +AKTI+WNGP GVFE E FA GTK    A  +A   GA  I+GGG
Sbjct  280  DIGPETIELFAEVIKKAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEATA-GAFSIVGGG  338

Query  375  DTATVAAKYGAEEKLSHVSTGGGASLELLEGK  406
            DTA    K G  +K SH+STGGGASLE LEGK
Sbjct  339  DTAAAVEKLGLADKFSHISTGGGASLEFLEGK  370



Lambda      K        H        a         alpha
   0.312    0.133    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00001710

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425495 pfam00162, PGK, Phosphoglycerate kinase                    536     0.0  


>CDD:425495 pfam00162, PGK, Phosphoglycerate kinase.  
Length=370

 Score = 536 bits (1384),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/377 (54%), Positives = 257/377 (68%), Gaps = 29/377 (8%)

Query  16   DKRVLIRVDFNVPLNEKKEVTNPQRIVGALPTIKYAIEQGAKAVVLMSHLGRPDGKKNPK  75
             KRVL+RVDFNVPL++  ++T+  RI  ALPTIKY +E+GAK V+LMSHLGRP GK   K
Sbjct  1    GKRVLVRVDFNVPLDDDGKITDDTRIRAALPTIKYLLEKGAK-VILMSHLGRPKGKD-DK  58

Query  76   YSLKPVVPELEKLLGKSVIFTEDCVGKEVKA---------------------DKEKVAEF  114
            +SLKPV   L +LLGK V F +DC+G E +A                     +++   EF
Sbjct  59   FSLKPVAERLSELLGKPVKFADDCIGPEAEAAIAALKPGEVLLLENVRFYKEEEKNDPEF  118

Query  115  RKGLTALGDIYINDAFGTAHRAHSSMVGV-DLPQKASGFLVKKELEYFAKALESPSRPFL  173
             K L +L D+Y+NDAFGTAHRAH+S VGV      A+GFL++KELE  +KALE+P RPF+
Sbjct  119  AKKLASLADVYVNDAFGTAHRAHASTVGVAKFLPSAAGFLMEKELEALSKALENPERPFV  178

Query  174  AILGGSKVSDKIQLIDNLLPKVNSLIITGGMAFTFKKTLENVKIGNSLFDEAGSKTVGDI  233
            AILGG+KVSDKI +I+NLL KV+ LII GGMA TF K  +  +IG SL +E   +   ++
Sbjct  179  AILGGAKVSDKIGVIENLLDKVDKLIIGGGMANTFLKA-QGYEIGKSLVEEDKIELAKEL  237

Query  234  IEKAKKNNVKIVLPVDYITADKFSADAKTGYATDEEGIPDGYMGLDVGDKSVKLYKETIA  293
            +EKAK   VKIVLPVD + AD+FSA+ K     D + IPD +MGLD+G ++++L+ E I 
Sbjct  238  LEKAKAKGVKIVLPVDVVVADEFSAEGKV---VDVDEIPDDWMGLDIGPETIELFAEVIK  294

Query  294  EAKTILWNGPPGVFEMEPFANGTKQTLDAAVDAAKNGAIVIIGGGDTATVAAKYGAEEKL  353
            +AKTI+WNGP GVFE E FA GTK    A  +A   GA  I+GGGDTA    K G  +K 
Sbjct  295  KAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEATA-GAFSIVGGGDTAAAVEKLGLADKF  353

Query  354  SHVSTGGGASLELLEGK  370
            SH+STGGGASLE LEGK
Sbjct  354  SHISTGGGASLEFLEGK  370



Lambda      K        H        a         alpha
   0.314    0.134    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00001711

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425495 pfam00162, PGK, Phosphoglycerate kinase                    580     0.0  


>CDD:425495 pfam00162, PGK, Phosphoglycerate kinase.  
Length=370

 Score = 580 bits (1497),  Expect = 0.0, Method: Composition-based stats.
 Identities = 215/392 (55%), Positives = 271/392 (69%), Gaps = 23/392 (6%)

Query  16   DKRVLIRVDFNVPLNEKKEVTNPQRIVGALPTIKYAIEQGAKAVVLMSHLGRPDGKKNPK  75
             KRVL+RVDFNVPL++  ++T+  RI  ALPTIKY +E+GAK V+LMSHLGRP GK   K
Sbjct  1    GKRVLVRVDFNVPLDDDGKITDDTRIRAALPTIKYLLEKGAK-VILMSHLGRPKGKD-DK  58

Query  76   YSLKPVVPELEKLLGKSVIFTEDCVGKEVEETVNKASGGQVILLENLRFHPEEEGSYKDE  135
            +SLKPV   L +LLGK V F +DC+G E E  +     G+V+LLEN+RF+ EEE      
Sbjct  59   FSLKPVAERLSELLGKPVKFADDCIGPEAEAAIAALKPGEVLLLENVRFYKEEE------  112

Query  136  EGKKVKADKEKVAEFRKGLTALGDIYINDAFGTAHRAHSSMVGV-DLPQKASGFLVKKEL  194
                 K D E    F K L +L D+Y+NDAFGTAHRAH+S VGV      A+GFL++KEL
Sbjct  113  -----KNDPE----FAKKLASLADVYVNDAFGTAHRAHASTVGVAKFLPSAAGFLMEKEL  163

Query  195  EYFAKALESPSRPFLAILGGSKVSDKIQLIDNLLPKVNSLIITGGMAFTFKKTLENVKIG  254
            E  +KALE+P RPF+AILGG+KVSDKI +I+NLL KV+ LII GGMA TF K  +  +IG
Sbjct  164  EALSKALENPERPFVAILGGAKVSDKIGVIENLLDKVDKLIIGGGMANTFLKA-QGYEIG  222

Query  255  NSLFDEAGSKTVGDIIEKAKKNNVKIVLPVDYITADKFSADAKTGYATDEEGIPDGYMGL  314
             SL +E   +   +++EKAK   VKIVLPVD + AD+FSA+ K     D + IPD +MGL
Sbjct  223  KSLVEEDKIELAKELLEKAKAKGVKIVLPVDVVVADEFSAEGKV---VDVDEIPDDWMGL  279

Query  315  DVGDKSVKLYKETIAEAKTILWNGPPGVFEMEPFANGTKQTLDAAVDAAKNGAIVIIGGG  374
            D+G ++++L+ E I +AKTI+WNGP GVFE E FA GTK    A  +A   GA  I+GGG
Sbjct  280  DIGPETIELFAEVIKKAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEATA-GAFSIVGGG  338

Query  375  DTATVAAKYGAEEKLSHVSTGGGASLELLEGK  406
            DTA    K G  +K SH+STGGGASLE LEGK
Sbjct  339  DTAAAVEKLGLADKFSHISTGGGASLEFLEGK  370



Lambda      K        H        a         alpha
   0.312    0.133    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00007312

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425495 pfam00162, PGK, Phosphoglycerate kinase                    570     0.0  


>CDD:425495 pfam00162, PGK, Phosphoglycerate kinase.  
Length=370

 Score = 570 bits (1471),  Expect = 0.0, Method: Composition-based stats.
 Identities = 213/379 (56%), Positives = 269/379 (71%), Gaps = 13/379 (3%)

Query  16   DKRVLIRVDFNVPLNEKKEVTNPQRIVGALPTIKYAIEQGAKAVVLMSHLGRPDGKKNPK  75
             KRVL+RVDFNVPL++  ++T+  RI  ALPTIKY +E+GAK V+LMSHLGRP GK   K
Sbjct  1    GKRVLVRVDFNVPLDDDGKITDDTRIRAALPTIKYLLEKGAK-VILMSHLGRPKGKD-DK  58

Query  76   YSLKPVVPELEKLLGKSVIFTEDCVGKEVEETVNKASGGQVILLENLRFHPEEEGSYKDE  135
            +SLKPV   L +LLGK V F +DC+G E E  +     G+V+LLEN+RF+ EEE    D 
Sbjct  59   FSLKPVAERLSELLGKPVKFADDCIGPEAEAAIAALKPGEVLLLENVRFYKEEEK--NDP  116

Query  136  E-GKKVK--ADIYINDAFGTAHRAHSSMVGV-DLPQKASGFLVKKELEYFAKALESPSRP  191
            E  KK+   AD+Y+NDAFGTAHRAH+S VGV      A+GFL++KELE  +KALE+P RP
Sbjct  117  EFAKKLASLADVYVNDAFGTAHRAHASTVGVAKFLPSAAGFLMEKELEALSKALENPERP  176

Query  192  FLAILGGSKVSDKIQLIDNLLPKVNSLIITGGMAFTFKKTLENVKIGNSLFDEAGSKTVG  251
            F+AILGG+KVSDKI +I+NLL KV+ LII GGMA TF K  +  +IG SL +E   +   
Sbjct  177  FVAILGGAKVSDKIGVIENLLDKVDKLIIGGGMANTFLKA-QGYEIGKSLVEEDKIELAK  235

Query  252  DIIEKAKKNNVKIVLPVDYITADKFSADAKTGYATDEEGIPDGYMGLDVGDKSVKLYKET  311
            +++EKAK   VKIVLPVD + AD+FSA+ K     D + IPD +MGLD+G ++++L+ E 
Sbjct  236  ELLEKAKAKGVKIVLPVDVVVADEFSAEGKV---VDVDEIPDDWMGLDIGPETIELFAEV  292

Query  312  IAEAKTILWNGPPGVFEMEPFANGTKQTLDAAVDAAKNGAIVIIGGGDTATVAAKYGAEE  371
            I +AKTI+WNGP GVFE E FA GTK    A  +A   GA  I+GGGDTA    K G  +
Sbjct  293  IKKAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEATA-GAFSIVGGGDTAAAVEKLGLAD  351

Query  372  KLSHVSTGGGASLELLEGK  390
            K SH+STGGGASLE LEGK
Sbjct  352  KFSHISTGGGASLEFLEGK  370



Lambda      K        H        a         alpha
   0.312    0.133    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00001712

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425495 pfam00162, PGK, Phosphoglycerate kinase                    488     4e-175


>CDD:425495 pfam00162, PGK, Phosphoglycerate kinase.  
Length=370

 Score = 488 bits (1260),  Expect = 4e-175, Method: Composition-based stats.
 Identities = 184/351 (52%), Positives = 235/351 (67%), Gaps = 27/351 (8%)

Query  16   DKRVLIRVDFNVPLNEKKEVTNPQRIVGALPTIKYAIEQGAKAVVLMSHLGRPDGKKNPK  75
             KRVL+RVDFNVPL++  ++T+  RI  ALPTIKY +E+GAK V+LMSHLGRP GK   K
Sbjct  1    GKRVLVRVDFNVPLDDDGKITDDTRIRAALPTIKYLLEKGAK-VILMSHLGRPKGKD-DK  58

Query  76   YSLKPVVPELEKLLGKSVIFTEDCVGKEVEETAD-------------------KEKVAEF  116
            +SLKPV   L +LLGK V F +DC+G E E                       ++   EF
Sbjct  59   FSLKPVAERLSELLGKPVKFADDCIGPEAEAAIAALKPGEVLLLENVRFYKEEEKNDPEF  118

Query  117  RKGLTALGDIYINDAFGTAHRAHSSMVGV-DLPQKASGFLVKKELEYFAKALESPSRPFL  175
             K L +L D+Y+NDAFGTAHRAH+S VGV      A+GFL++KELE  +KALE+P RPF+
Sbjct  119  AKKLASLADVYVNDAFGTAHRAHASTVGVAKFLPSAAGFLMEKELEALSKALENPERPFV  178

Query  176  AILGGSKVSDKIQLIDNLLPKVNSLIITGGMAFTFKKTLENVKIGNSLFDEAGSKTVGDI  235
            AILGG+KVSDKI +I+NLL KV+ LII GGMA TF K  +  +IG SL +E   +   ++
Sbjct  179  AILGGAKVSDKIGVIENLLDKVDKLIIGGGMANTFLKA-QGYEIGKSLVEEDKIELAKEL  237

Query  236  IEKAKKNNVKIVLPVDYITADKFSADAKTGYATDEEGIPDGYMGLDVGDKSVKLYKETIA  295
            +EKAK   VKIVLPVD + AD+FSA+ K     D + IPD +MGLD+G ++++L+ E I 
Sbjct  238  LEKAKAKGVKIVLPVDVVVADEFSAEGKV---VDVDEIPDDWMGLDIGPETIELFAEVIK  294

Query  296  EAKTILWNGPPGVFEMEPFANGTKQTLDAAVDAAKNGAIVIIGGGDTATVA  346
            +AKTI+WNGP GVFE E FA GTK    A  +A   GA  I+GGGDTA   
Sbjct  295  KAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEATA-GAFSIVGGGDTAAAV  344



Lambda      K        H        a         alpha
   0.314    0.135    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00001713

Length=182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425495 pfam00162, PGK, Phosphoglycerate kinase                    237     7e-79


>CDD:425495 pfam00162, PGK, Phosphoglycerate kinase.  
Length=370

 Score = 237 bits (608),  Expect = 7e-79, Method: Composition-based stats.
 Identities = 87/167 (52%), Positives = 111/167 (66%), Gaps = 5/167 (3%)

Query  1    MAFTFKKTLENVKIGNSLFDEAGSKTVGDIIEKAKKNNVKIVLPVDYITADKFSADAKTG  60
            MA TF K  +  +IG SL +E   +   +++EKAK   VKIVLPVD + AD+FSA+ K  
Sbjct  209  MANTFLKA-QGYEIGKSLVEEDKIELAKELLEKAKAKGVKIVLPVDVVVADEFSAEGKV-  266

Query  61   YATDEEGIPDGYMGLDVGDKSVKLYKETIAEAKTILWNGPPGVFEMEPFANGTKQTLDAA  120
               D + IPD +MGLD+G ++++L+ E I +AKTI+WNGP GVFE E FA GTK    A 
Sbjct  267  --VDVDEIPDDWMGLDIGPETIELFAEVIKKAKTIVWNGPMGVFEFENFAKGTKAVAKAI  324

Query  121  VDAAKNGAIVIIGGGDTATVAAKYGAEEKLSHVSTGGGASLELLEGK  167
             +A   GA  I+GGGDTA    K G  +K SH+STGGGASLE LEGK
Sbjct  325  AEATA-GAFSIVGGGDTAAAVEKLGLADKFSHISTGGGASLEFLEGK  370



Lambda      K        H        a         alpha
   0.310    0.131    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00007314

Length=242
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425495 pfam00162, PGK, Phosphoglycerate kinase                    340     2e-118


>CDD:425495 pfam00162, PGK, Phosphoglycerate kinase.  
Length=370

 Score = 340 bits (875),  Expect = 2e-118, Method: Composition-based stats.
 Identities = 128/232 (55%), Positives = 162/232 (70%), Gaps = 6/232 (3%)

Query  1    MVGV-DLPQKASGFLVKKELEYFAKALESPSRPFLAILGGSKVSDKIQLIDNLLPKVNSL  59
             VGV      A+GFL++KELE  +KALE+P RPF+AILGG+KVSDKI +I+NLL KV+ L
Sbjct  144  TVGVAKFLPSAAGFLMEKELEALSKALENPERPFVAILGGAKVSDKIGVIENLLDKVDKL  203

Query  60   IITGGMAFTFKKTLENVKIGNSLFDEAGSKTVGDIIEKAKKNNVKIVLPVDYITADKFSA  119
            II GGMA TF K  +  +IG SL +E   +   +++EKAK   VKIVLPVD + AD+FSA
Sbjct  204  IIGGGMANTFLKA-QGYEIGKSLVEEDKIELAKELLEKAKAKGVKIVLPVDVVVADEFSA  262

Query  120  DAKTGYATDEEGIPDGYMGLDVGDKSVKLYKETIAEAKTILWNGPPGVFEMEPFANGTKQ  179
            + K     D + IPD +MGLD+G ++++L+ E I +AKTI+WNGP GVFE E FA GTK 
Sbjct  263  EGKV---VDVDEIPDDWMGLDIGPETIELFAEVIKKAKTIVWNGPMGVFEFENFAKGTKA  319

Query  180  TLDAAVDAAKNGAIVIIGGGDTATVAAKYGAEEKLSHVSTGGGASLELLEGK  231
               A  +A   GA  I+GGGDTA    K G  +K SH+STGGGASLE LEGK
Sbjct  320  VAKAIAEATA-GAFSIVGGGDTAAAVEKLGLADKFSHISTGGGASLEFLEGK  370



Lambda      K        H        a         alpha
   0.312    0.133    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00007315

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425495 pfam00162, PGK, Phosphoglycerate kinase                    531     0.0  


>CDD:425495 pfam00162, PGK, Phosphoglycerate kinase.  
Length=370

 Score = 531 bits (1371),  Expect = 0.0, Method: Composition-based stats.
 Identities = 201/377 (53%), Positives = 252/377 (67%), Gaps = 35/377 (9%)

Query  16   DKRVLIRVDFNVPLNEKKEVTNPQRIVGALPTIKYAIEQGAKAVVLMSHLGRPDGKKNPK  75
             KRVL+RVDFNVPL++  ++T+  RI  ALPTIKY +E+GAK V+LMSHLGRP GK   K
Sbjct  1    GKRVLVRVDFNVPLDDDGKITDDTRIRAALPTIKYLLEKGAK-VILMSHLGRPKGKD-DK  58

Query  76   YSLKPVVPELEKLLGKSVIFTEDCVGKE---------------------------KVAEF  108
            +SLKPV   L +LLGK V F +DC+G E                              EF
Sbjct  59   FSLKPVAERLSELLGKPVKFADDCIGPEAEAAIAALKPGEVLLLENVRFYKEEEKNDPEF  118

Query  109  RKGLTALGDIYINDAFGTAHRAHSSMVGV-DLPQKASGFLVKKELEYFAKALESPSRPFL  167
             K L +L D+Y+NDAFGTAHRAH+S VGV      A+GFL++KELE  +KALE+P RPF+
Sbjct  119  AKKLASLADVYVNDAFGTAHRAHASTVGVAKFLPSAAGFLMEKELEALSKALENPERPFV  178

Query  168  AILGGSKVSDKIQLIDNLLPKVNSLIITGGMAFTFKKTLENVKIGNSLFDEAGSKTVGDI  227
            AILGG+KVSDKI +I+NLL KV+ LII GGMA TF K  +  +IG SL +E   +   ++
Sbjct  179  AILGGAKVSDKIGVIENLLDKVDKLIIGGGMANTFLKA-QGYEIGKSLVEEDKIELAKEL  237

Query  228  IEKAKKNNVKIVLPVDYITADKFSADAKTGYATDEEGIPDGYMGLDVGDKSVKLYKETIA  287
            +EKAK   VKIVLPVD + AD+FSA+ K     D + IPD +MGLD+G ++++L+ E I 
Sbjct  238  LEKAKAKGVKIVLPVDVVVADEFSAEGKV---VDVDEIPDDWMGLDIGPETIELFAEVIK  294

Query  288  EAKTILWNGPPGVFEMEPFANGTKQTLDAAVDAAKNGAIVIIGGGDTATVAAKYGAEEKL  347
            +AKTI+WNGP GVFE E FA GTK    A  +A   GA  I+GGGDTA    K G  +K 
Sbjct  295  KAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEATA-GAFSIVGGGDTAAAVEKLGLADKF  353

Query  348  SHVSTGGGASLELLEGK  364
            SH+STGGGASLE LEGK
Sbjct  354  SHISTGGGASLEFLEGK  370



Lambda      K        H        a         alpha
   0.313    0.134    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00007316

Length=242
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425495 pfam00162, PGK, Phosphoglycerate kinase                    340     2e-118


>CDD:425495 pfam00162, PGK, Phosphoglycerate kinase.  
Length=370

 Score = 340 bits (875),  Expect = 2e-118, Method: Composition-based stats.
 Identities = 128/232 (55%), Positives = 162/232 (70%), Gaps = 6/232 (3%)

Query  1    MVGV-DLPQKASGFLVKKELEYFAKALESPSRPFLAILGGSKVSDKIQLIDNLLPKVNSL  59
             VGV      A+GFL++KELE  +KALE+P RPF+AILGG+KVSDKI +I+NLL KV+ L
Sbjct  144  TVGVAKFLPSAAGFLMEKELEALSKALENPERPFVAILGGAKVSDKIGVIENLLDKVDKL  203

Query  60   IITGGMAFTFKKTLENVKIGNSLFDEAGSKTVGDIIEKAKKNNVKIVLPVDYITADKFSA  119
            II GGMA TF K  +  +IG SL +E   +   +++EKAK   VKIVLPVD + AD+FSA
Sbjct  204  IIGGGMANTFLKA-QGYEIGKSLVEEDKIELAKELLEKAKAKGVKIVLPVDVVVADEFSA  262

Query  120  DAKTGYATDEEGIPDGYMGLDVGDKSVKLYKETIAEAKTILWNGPPGVFEMEPFANGTKQ  179
            + K     D + IPD +MGLD+G ++++L+ E I +AKTI+WNGP GVFE E FA GTK 
Sbjct  263  EGKV---VDVDEIPDDWMGLDIGPETIELFAEVIKKAKTIVWNGPMGVFEFENFAKGTKA  319

Query  180  TLDAAVDAAKNGAIVIIGGGDTATVAAKYGAEEKLSHVSTGGGASLELLEGK  231
               A  +A   GA  I+GGGDTA    K G  +K SH+STGGGASLE LEGK
Sbjct  320  VAKAIAEATA-GAFSIVGGGDTAAAVEKLGLADKFSHISTGGGASLEFLEGK  370



Lambda      K        H        a         alpha
   0.312    0.133    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00001714

Length=725
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463047 pfam10300, DUF3808, Protein of unknown function (DUF38...  539     0.0  


>CDD:463047 pfam10300, DUF3808, Protein of unknown function (DUF3808).  This 
is a family of proteins conserved from fungi to humans. 
Members of this family also carry a TPR_2 domain pfam07719 at 
their C-terminus.
Length=469

 Score = 539 bits (1391),  Expect = 0.0, Method: Composition-based stats.
 Identities = 181/572 (32%), Positives = 252/572 (44%), Gaps = 108/572 (19%)

Query  35   MRAATLILNDDVDGAEAGLAE--GTSAFHNLGRGVVAFIRATLGFEQDIMRQASERLNEA  92
            ++A  L LN+  + A   L      S +H LG  VVAFI+A L FE + ++QASE L EA
Sbjct  1    LQALDLFLNNKFEEALELLKPWSKNSMYHALGYSVVAFIQAMLTFEPEDIQQASEALKEA  60

Query  93   ETSASVDQHRAQHNSYAPNTYHSPMYLPGTEFALCQAIAQLMSAIVGVLNESLTESIKAF  152
            E      + +AQ N    NT  S +Y PGT   +C A   L+ A +   +ESL   IK  
Sbjct  61   EQVCQRFRKKAQVNESIQNTDTSQLYEPGTHAEVCYAECLLLKAALTFQDESLVSFIKGG  120

Query  153  YRLRKAYITLDAILKMEQKYMEESRAATLVESTTSGSVPSSLRHSSSNLHSSSSSISSAK  212
            Y+LRKAY      LK+     +  R                                   
Sbjct  121  YKLRKAYQIYKECLKLINDPQQTKR-----------------------------------  145

Query  213  GKEAAADTLAAPSNDTDVQERLADLNLSGEPAVAEDPGQTPTPINTDILDHDPDSDIFQN  272
                                                        ++        +D  Q 
Sbjct  146  --------------------------------------------SSPGDSSLSHNDNNQA  161

Query  273  QIDVFVHSGSNFCFGVLLLLISMVPPSFSKLLSIIGFHGDKERGLKMLWQASKFHNLIGG  332
            +ID F  SG N  FG+  L++S++PP   KLL  IGF GD+E GL++LW+ASK  N+   
Sbjct  162  EIDEFFESGVNLGFGIFNLMLSLLPPRILKLLEFIGFSGDREDGLRLLWEASKSPNIRAA  221

Query  333  IAAFAILGYYNGFVRYCDIMPDSIPGKDGDVQGYPQKRLELLLAKMRERFPKSQLWLLEE  392
            +A   +L YY G  +   I               P +  E LL   R+R+P   LWL  E
Sbjct  222  LALLTLLFYYTGVRQVLGI----------PGGEGPLEEAEALLLPYRKRYPNGALWLFFE  271

Query  393  SRMSGANKNLDRALELL--CGEERSPLKQVEALRVFERSLNAMYLHKYELCADSFLECVD  450
            +R+     NLD ALEL   C E +S  KQV  L  +E     ++LH ++  A+ FL  V 
Sbjct  272  ARIESLKGNLDEALELFEECIESQSEWKQVHHLCYWELMWCLVFLHNWKQAANYFLLLVK  331

Query  451  LNSWSRSLYYYIAGSCHLSLYRDAKETDSAKAAKHAELAEKYFRMAPTVAGKKRFMARQL  510
             +SWS +LY Y A +C L LYR+       +A    E A + FR  PT+  K     + L
Sbjct  332  ESSWSHALYTYFAAACLLMLYRE------EEAPAAKERAVELFREVPTLKQKIAG--KSL  383

Query  511  PFDVFVARKFAKWEARAKEWKVSLVDAVGVDPIEEMIFFWNGHSRMTDEQLQ-ESLQKLA  569
            P + F ARK  +++AR         DAV V P+ E+I+FWNG SRM  + L  ES+ KL 
Sbjct  384  PLEKFAARKVQRFKARTP------ADAVLVSPLLELIYFWNGFSRMGKKPLLTESVLKLI  437

Query  570  WSESSANTTWSREGPEEKAILKLLRAAVHRSL  601
                 AN T   + P++K + +LL+    R L
Sbjct  438  EKALKANPTSEAQEPDDKCLKQLLKGLCLRHL  469



Lambda      K        H        a         alpha
   0.317    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 918200912


Query= TCONS_00001715

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            95.9    4e-22


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 95.9 bits (239),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 127/370 (34%), Gaps = 46/370 (12%)

Query  128  SSIYSTGTIQVSKHFGVGEEVGTLGTTLLLFGFGLGPLVFAPLSEVYGRKSAVLIPYFIA  187
            S +     + +++  G+      L  TL   G+ L   +   LS+ +GR+  +LI   + 
Sbjct  13   SLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLF  72

Query  188  AIFSFGTATAKDLQTVMITRFFTGFFGSAPVTNTGGVLGDIWSAEQRGAAIVGYAMAVVG  247
            A+       A  L  +++ R   G    A       ++ D +  E+RG A+   +     
Sbjct  73   ALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGL  132

Query  248  GPVLGPIVGGAIVQSYLGWRWTQYITGIMMMFFLVMDVIFLDESYAPVLLVYKARRLRYE  307
            G  LGP++GG +  S  GWR    I  I+ +   V+ ++                     
Sbjct  133  GAALGPLLGGLLA-SLFGWRAAFLILAILSLLAAVLLLLPRPP-----------------  174

Query  308  TGNWALHARHEEWDVTLKELGNKYLVRPFQLLATPICFLVALYASFVYGILYLSLASFPV  367
                      E       E     L+  ++ L       + L         +  L   P+
Sbjct  175  ---------PESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPL  225

Query  368  EFQEVRGWSPVVGALPF-LAYLIGILFGAALNLFNQRFYIERFKANNNFPVPEARLPPMM  426
             +QEV G S ++  L   L  L+G +    L   + R                 RL   +
Sbjct  226  -YQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRL------------GRRRRLLLAL  272

Query  427  VGSVFFAAGLFIFGWTGAKNIHWIGPNAGAVSMGFGFFTIFQAALNYLIDTF-QQYAASA  485
            +  +  A GL +   T +     +      + +GFGF  +F A    + D   ++   +A
Sbjct  273  LLLILAALGLLLLSLTLSSLWLLL----ALLLLGFGFGLVFPALNALVSDLAPKEERGTA  328

Query  486  VAANTFLRSL  495
                    SL
Sbjct  329  SGLYNTAGSL  338



Lambda      K        H        a         alpha
   0.325    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 697897876


Query= TCONS_00001717

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00001718

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00007317

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00001719

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00007318

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00007319

Length=1399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  109     4e-28
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  98.1    7e-23


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 109 bits (274),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 48/156 (31%), Positives = 80/156 (51%), Gaps = 16/156 (10%)

Query  1244  LGDVSLTIKSGEKVGICGRTGSGKTSLIMSLFRMVELSSGSIHIDGVDITKIPRQEIRSR  1303
             L +VSLT+  GE + + G  G+GK++L+  +  ++  + G+I +DG D+T   R+ +R  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1304  INGVSQSPLLIKG-SIRRNM-------DPNGSYAEKAIIEAIKSVGLYTKIQEKGGLDTD  1355
             I  V Q P L    ++R N+         +    +    EA++ +GL          D  
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGL------GDLADRP  114

Query  1356  ISEVF--LSQGQQQLFCLARAILRPGKVLVLDEATS  1389
             + E    LS GQ+Q   +ARA+L   K+L+LDE T+
Sbjct  115   VGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 96.2 bits (240),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 23/155 (15%)

Query  643  LKGLTISIARGSFTMIVGPSGCGKSTLLKAILGEVPCVNGEIRL------------SSDS  690
            LK +++++  G    +VGP+G GKSTLLK I G +    G I L                
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  691  IAFCDQIPWHMNA-TIRESI---VAMSSFDKEWYASVVHACGLVQDFEQLPRGD--ETVI  744
            I +  Q P      T+RE++   + +    K    +        +  E+L  GD  +  +
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAE-----EALEKLGLGDLADRPV  115

Query  745  GSKGIALSGGQSQRIALARAVYARKDIVILDDAFS  779
            G +   LSGGQ QR+A+ARA+  +  +++LD+  +
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 98.1 bits (245),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 49/277 (18%), Positives = 94/277 (34%), Gaps = 14/277 (5%)

Query  911   VIFLVAISGFVFCISFPSIWVKW------WAISNEEDPNGRTGYYLGIYAMLGAVGMLSL  964
              I L  +SG +   +FP +  +             +  N  +   L +      +  L  
Sbjct  4     AILLAILSGAIS-PAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQS  62

Query  965   IIGCWEMVINMVPKSGESFHRKLLATVLNAPMSFFAATDSGSILNRFSQDLQLIDMELPV  1024
              +        +  +      RKL   +L  PMSFF     G +L+R + D   I   L  
Sbjct  63    YLLNH-TGERLSRRL----RRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  1025  AAINTFATLILCLAQMILMGIASRYAAISFPLVILAVYSIQKVYLRTSRQLRFLDLEAKA  1084
                  F +L   +  +I+M        +    V+     +  V+ +  R+L   + +A A
Sbjct  118   KLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVA  177

Query  1085  PLYSHFSDCLNGLVTLRAFGWQPALEDKNFQLLDYSQRPFYLLYAIQRWLTLTLDMVVAA  1144
                S   + L+G+ T++AFG +    +K  + L+ + +                  +   
Sbjct  178   KASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYL  237

Query  1145  IAVILIVLVVTL--RGTISAGDVGVALLNVILFSQSI  1179
                + +     L   G +S GD+   L         +
Sbjct  238   SYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.323    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1790956600


Query= TCONS_00001720

Length=20


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.139    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 66022480


Query= TCONS_00001722

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00001723

Length=1467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  109     4e-28
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  98.9    5e-23


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 109 bits (275),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 48/156 (31%), Positives = 80/156 (51%), Gaps = 16/156 (10%)

Query  1244  LGDVSLTIKSGEKVGICGRTGSGKTSLIMSLFRMVELSSGSIHIDGVDITKIPRQEIRSR  1303
             L +VSLT+  GE + + G  G+GK++L+  +  ++  + G+I +DG D+T   R+ +R  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1304  INGVSQSPLLIKG-SIRRNM-------DPNGSYAEKAIIEAIKSVGLYTKIQEKGGLDTD  1355
             I  V Q P L    ++R N+         +    +    EA++ +GL          D  
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGL------GDLADRP  114

Query  1356  ISEVF--LSQGQQQLFCLARAILRPGKVLVLDEATS  1389
             + E    LS GQ+Q   +ARA+L   K+L+LDE T+
Sbjct  115   VGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 96.2 bits (240),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 23/155 (15%)

Query  643  LKGLTISIARGSFTMIVGPSGCGKSTLLKAILGEVPCVNGEIRL------------SSDS  690
            LK +++++  G    +VGP+G GKSTLLK I G +    G I L                
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  691  IAFCDQIPWHMNA-TIRESI---VAMSSFDKEWYASVVHACGLVQDFEQLPRGD--ETVI  744
            I +  Q P      T+RE++   + +    K    +        +  E+L  GD  +  +
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAE-----EALEKLGLGDLADRPV  115

Query  745  GSKGIALSGGQSQRIALARAVYARKDIVILDDAFS  779
            G +   LSGGQ QR+A+ARA+  +  +++LD+  +
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 98.9 bits (247),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 49/277 (18%), Positives = 94/277 (34%), Gaps = 14/277 (5%)

Query  911   VIFLVAISGFVFCISFPSIWVKW------WAISNEEDPNGRTGYYLGIYAMLGAVGMLSL  964
              I L  +SG +   +FP +  +             +  N  +   L +      +  L  
Sbjct  4     AILLAILSGAIS-PAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQS  62

Query  965   IIGCWEMVINMVPKSGESFHRKLLATVLNAPMSFFAATDSGSILNRFSQDLQLIDMELPV  1024
              +        +  +      RKL   +L  PMSFF     G +L+R + D   I   L  
Sbjct  63    YLLNH-TGERLSRRL----RRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  1025  AAINTFATLILCLAQMILMGIASRYAAISFPLVILAVYSIQKVYLRTSRQLRFLDLEAKA  1084
                  F +L   +  +I+M        +    V+     +  V+ +  R+L   + +A A
Sbjct  118   KLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVA  177

Query  1085  PLYSHFSDCLNGLVTLRAFGWQPALEDKNFQLLDYSQRPFYLLYAIQRWLTLTLDMVVAA  1144
                S   + L+G+ T++AFG +    +K  + L+ + +                  +   
Sbjct  178   KASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYL  237

Query  1145  IAVILIVLVVTL--RGTISAGDVGVALLNVILFSQSI  1179
                + +     L   G +S GD+   L         +
Sbjct  238   SYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.323    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1856324016


Query= TCONS_00001724

Length=1011
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  110     2e-28
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  101     4e-24


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 110 bits (276),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 48/156 (31%), Positives = 80/156 (51%), Gaps = 16/156 (10%)

Query  788  LGDVSLTIKSGEKVGICGRTGSGKTSLIMSLFRMVELSSGSIHIDGVDITKIPRQEIRSR  847
            L +VSLT+  GE + + G  G+GK++L+  +  ++  + G+I +DG D+T   R+ +R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  848  INGVSQSPLLIKG-SIRRNM-------DPNGSYAEKAIIEAIKSVGLYTKIQEKGGLDTD  899
            I  V Q P L    ++R N+         +    +    EA++ +GL          D  
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGL------GDLADRP  114

Query  900  ISEVF--LSQGQQQLFCLARAILRPGKVLVLDEATS  933
            + E    LS GQ+Q   +ARA+L   K+L+LDE T+
Sbjct  115  VGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 96.6 bits (241),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 23/155 (15%)

Query  187  LKGLTISIARGSFTMIVGPSGCGKSTLLKAILGEVPCVNGEIRL------------SSDS  234
            LK +++++  G    +VGP+G GKSTLLK I G +    G I L                
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  235  IAFCDQIPWHMNA-TIRESI---VAMSSFDKEWYASVVHACGLVQDFEQLPRGD--ETVI  288
            I +  Q P      T+RE++   + +    K    +        +  E+L  GD  +  +
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAE-----EALEKLGLGDLADRPV  115

Query  289  GSKGIALSGGQSQRIALARAVYARKDIVILDDAFS  323
            G +   LSGGQ QR+A+ARA+  +  +++LD+  +
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 101 bits (253),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 49/277 (18%), Positives = 94/277 (34%), Gaps = 14/277 (5%)

Query  455  VIFLVAISGFVFCISFPSIWVKW------WAISNEEDPNGRTGYYLGIYAMLGAVGMLSL  508
             I L  +SG +   +FP +  +             +  N  +   L +      +  L  
Sbjct  4    AILLAILSGAIS-PAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQS  62

Query  509  IIGCWEMVINMVPKSGESFHRKLLATVLNAPMSFFAATDSGSILNRFSQDLQLIDMELPV  568
             +        +  +      RKL   +L  PMSFF     G +L+R + D   I   L  
Sbjct  63   YLLNH-TGERLSRRL----RRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  569  AAINTFATLILCLAQMILMGIASRYAAISFPLVILAVYSIQKVYLRTSRQLRFLDLEAKA  628
                 F +L   +  +I+M        +    V+     +  V+ +  R+L   + +A A
Sbjct  118  KLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVA  177

Query  629  PLYSHFSDCLNGLVTLRAFGWQPALEDKNFQLLDYSQRPFYLLYAIQRWLTLTLDMVVAA  688
               S   + L+G+ T++AFG +    +K  + L+ + +                  +   
Sbjct  178  KASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYL  237

Query  689  IAVILIVLVVTL--RGTISAGDVGVALLNVILFSQSI  723
               + +     L   G +S GD+   L         +
Sbjct  238  SYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.321    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0754    0.140     1.90     42.6     43.6 

Effective search space used: 1295526540


Query= TCONS_00007320

Length=1265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  96.6    1e-23
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  97.7    1e-22


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 96.6 bits (241),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 23/155 (15%)

Query  643  LKGLTISIARGSFTMIVGPSGCGKSTLLKAILGEVPCVNGEIRL------------SSDS  690
            LK +++++  G    +VGP+G GKSTLLK I G +    G I L                
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  691  IAFCDQIPWHMNA-TIRESI---VAMSSFDKEWYASVVHACGLVQDFEQLPRGD--ETVI  744
            I +  Q P      T+RE++   + +    K    +        +  E+L  GD  +  +
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAE-----EALEKLGLGDLADRPV  115

Query  745  GSKGIALSGGQSQRIALARAVYARKDIVILDDAFS  779
            G +   LSGGQ QR+A+ARA+  +  +++LD+  +
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 97.7 bits (244),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 49/277 (18%), Positives = 94/277 (34%), Gaps = 14/277 (5%)

Query  911   VIFLVAISGFVFCISFPSIWVKW------WAISNEEDPNGRTGYYLGIYAMLGAVGMLSL  964
              I L  +SG +   +FP +  +             +  N  +   L +      +  L  
Sbjct  4     AILLAILSGAIS-PAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQS  62

Query  965   IIGCWEMVINMVPKSGESFHRKLLATVLNAPMSFFAATDSGSILNRFSQDLQLIDMELPV  1024
              +        +  +      RKL   +L  PMSFF     G +L+R + D   I   L  
Sbjct  63    YLLNH-TGERLSRRL----RRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  1025  AAINTFATLILCLAQMILMGIASRYAAISFPLVILAVYSIQKVYLRTSRQLRFLDLEAKA  1084
                  F +L   +  +I+M        +    V+     +  V+ +  R+L   + +A A
Sbjct  118   KLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVA  177

Query  1085  PLYSHFSDCLNGLVTLRAFGWQPALEDKNFQLLDYSQRPFYLLYAIQRWLTLTLDMVVAA  1144
                S   + L+G+ T++AFG +    +K  + L+ + +                  +   
Sbjct  178   KASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYL  237

Query  1145  IAVILIVLVVTL--RGTISAGDVGVALLNVILFSQSI  1179
                + +     L   G +S GD+   L         +
Sbjct  238   SYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.324    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1606492200


Query= TCONS_00001725

Length=1440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  109     3e-28
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  99.3    4e-23


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 109 bits (275),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 48/156 (31%), Positives = 80/156 (51%), Gaps = 16/156 (10%)

Query  1244  LGDVSLTIKSGEKVGICGRTGSGKTSLIMSLFRMVELSSGSIHIDGVDITKIPRQEIRSR  1303
             L +VSLT+  GE + + G  G+GK++L+  +  ++  + G+I +DG D+T   R+ +R  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1304  INGVSQSPLLIKG-SIRRNM-------DPNGSYAEKAIIEAIKSVGLYTKIQEKGGLDTD  1355
             I  V Q P L    ++R N+         +    +    EA++ +GL          D  
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGL------GDLADRP  114

Query  1356  ISEVF--LSQGQQQLFCLARAILRPGKVLVLDEATS  1389
             + E    LS GQ+Q   +ARA+L   K+L+LDE T+
Sbjct  115   VGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 96.6 bits (241),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 23/155 (15%)

Query  643  LKGLTISIARGSFTMIVGPSGCGKSTLLKAILGEVPCVNGEIRL------------SSDS  690
            LK +++++  G    +VGP+G GKSTLLK I G +    G I L                
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  691  IAFCDQIPWHMNA-TIRESI---VAMSSFDKEWYASVVHACGLVQDFEQLPRGD--ETVI  744
            I +  Q P      T+RE++   + +    K    +        +  E+L  GD  +  +
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAE-----EALEKLGLGDLADRPV  115

Query  745  GSKGIALSGGQSQRIALARAVYARKDIVILDDAFS  779
            G +   LSGGQ QR+A+ARA+  +  +++LD+  +
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 99.3 bits (248),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 49/277 (18%), Positives = 94/277 (34%), Gaps = 14/277 (5%)

Query  911   VIFLVAISGFVFCISFPSIWVKW------WAISNEEDPNGRTGYYLGIYAMLGAVGMLSL  964
              I L  +SG +   +FP +  +             +  N  +   L +      +  L  
Sbjct  4     AILLAILSGAIS-PAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQS  62

Query  965   IIGCWEMVINMVPKSGESFHRKLLATVLNAPMSFFAATDSGSILNRFSQDLQLIDMELPV  1024
              +        +  +      RKL   +L  PMSFF     G +L+R + D   I   L  
Sbjct  63    YLLNH-TGERLSRRL----RRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  1025  AAINTFATLILCLAQMILMGIASRYAAISFPLVILAVYSIQKVYLRTSRQLRFLDLEAKA  1084
                  F +L   +  +I+M        +    V+     +  V+ +  R+L   + +A A
Sbjct  118   KLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVA  177

Query  1085  PLYSHFSDCLNGLVTLRAFGWQPALEDKNFQLLDYSQRPFYLLYAIQRWLTLTLDMVVAA  1144
                S   + L+G+ T++AFG +    +K  + L+ + +                  +   
Sbjct  178   KASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYL  237

Query  1145  IAVILIVLVVTL--RGTISAGDVGVALLNVILFSQSI  1179
                + +     L   G +S GD+   L         +
Sbjct  238   SYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.323    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1847397200


Query= TCONS_00001726

Length=1004
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  96.6    8e-24


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 96.6 bits (241),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 23/155 (15%)

Query  643  LKGLTISIARGSFTMIVGPSGCGKSTLLKAILGEVPCVNGEIRL------------SSDS  690
            LK +++++  G    +VGP+G GKSTLLK I G +    G I L                
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  691  IAFCDQIPWHMNA-TIRESI---VAMSSFDKEWYASVVHACGLVQDFEQLPRGD--ETVI  744
            I +  Q P      T+RE++   + +    K    +        +  E+L  GD  +  +
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAE-----EALEKLGLGDLADRPV  115

Query  745  GSKGIALSGGQSQRIALARAVYARKDIVILDDAFS  779
            G +   LSGGQ QR+A+ARA+  +  +++LD+  +
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.324    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1285615408


Query= TCONS_00007321

Length=770
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  75.4    1e-16


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 75.4 bits (186),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 59/135 (44%), Gaps = 23/135 (17%)

Query  643  LKGLTISIARGSFTMIVGPSGCGKSTLLKAILGEVPCVNGEIRL------------SSDS  690
            LK +++++  G    +VGP+G GKSTLLK I G +    G I L                
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  691  IAFCDQIPWHMNA-TIRESI---VAMSSFDKEWYASVVHACGLVQDFEQLPRGD--ETVI  744
            I +  Q P      T+RE++   + +    K    +        +  E+L  GD  +  +
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAE-----EALEKLGLGDLADRPV  115

Query  745  GSKGIALSGGQSQRI  759
            G +   LSGGQ QR+
Sbjct  116  GERPGTLSGGQRQRV  130



Lambda      K        H        a         alpha
   0.324    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 983682752


Query= TCONS_00001728

Length=1467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  109     4e-28
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  98.9    5e-23


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 109 bits (275),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 48/156 (31%), Positives = 80/156 (51%), Gaps = 16/156 (10%)

Query  1244  LGDVSLTIKSGEKVGICGRTGSGKTSLIMSLFRMVELSSGSIHIDGVDITKIPRQEIRSR  1303
             L +VSLT+  GE + + G  G+GK++L+  +  ++  + G+I +DG D+T   R+ +R  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1304  INGVSQSPLLIKG-SIRRNM-------DPNGSYAEKAIIEAIKSVGLYTKIQEKGGLDTD  1355
             I  V Q P L    ++R N+         +    +    EA++ +GL          D  
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGL------GDLADRP  114

Query  1356  ISEVF--LSQGQQQLFCLARAILRPGKVLVLDEATS  1389
             + E    LS GQ+Q   +ARA+L   K+L+LDE T+
Sbjct  115   VGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 96.2 bits (240),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 23/155 (15%)

Query  643  LKGLTISIARGSFTMIVGPSGCGKSTLLKAILGEVPCVNGEIRL------------SSDS  690
            LK +++++  G    +VGP+G GKSTLLK I G +    G I L                
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  691  IAFCDQIPWHMNA-TIRESI---VAMSSFDKEWYASVVHACGLVQDFEQLPRGD--ETVI  744
            I +  Q P      T+RE++   + +    K    +        +  E+L  GD  +  +
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAE-----EALEKLGLGDLADRPV  115

Query  745  GSKGIALSGGQSQRIALARAVYARKDIVILDDAFS  779
            G +   LSGGQ QR+A+ARA+  +  +++LD+  +
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 98.9 bits (247),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 49/277 (18%), Positives = 94/277 (34%), Gaps = 14/277 (5%)

Query  911   VIFLVAISGFVFCISFPSIWVKW------WAISNEEDPNGRTGYYLGIYAMLGAVGMLSL  964
              I L  +SG +   +FP +  +             +  N  +   L +      +  L  
Sbjct  4     AILLAILSGAIS-PAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQS  62

Query  965   IIGCWEMVINMVPKSGESFHRKLLATVLNAPMSFFAATDSGSILNRFSQDLQLIDMELPV  1024
              +        +  +      RKL   +L  PMSFF     G +L+R + D   I   L  
Sbjct  63    YLLNH-TGERLSRRL----RRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  1025  AAINTFATLILCLAQMILMGIASRYAAISFPLVILAVYSIQKVYLRTSRQLRFLDLEAKA  1084
                  F +L   +  +I+M        +    V+     +  V+ +  R+L   + +A A
Sbjct  118   KLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVA  177

Query  1085  PLYSHFSDCLNGLVTLRAFGWQPALEDKNFQLLDYSQRPFYLLYAIQRWLTLTLDMVVAA  1144
                S   + L+G+ T++AFG +    +K  + L+ + +                  +   
Sbjct  178   KASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYL  237

Query  1145  IAVILIVLVVTL--RGTISAGDVGVALLNVILFSQSI  1179
                + +     L   G +S GD+   L         +
Sbjct  238   SYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.323    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1856324016


Query= TCONS_00001727

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  96.9    2e-24


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 96.9 bits (242),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 23/155 (15%)

Query  315  LKGLTISIARGSFTMIVGPSGCGKSTLLKAILGEVPCVNGEIRL------------SSDS  362
            LK +++++  G    +VGP+G GKSTLLK I G +    G I L                
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  363  IAFCDQIPWHMNA-TIRESI---VAMSSFDKEWYASVVHACGLVQDFEQLPRGD--ETVI  416
            I +  Q P      T+RE++   + +    K    +        +  E+L  GD  +  +
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAE-----EALEKLGLGDLADRPV  115

Query  417  GSKGIALSGGQSQRIALARAVYARKDIVILDDAFS  451
            G +   LSGGQ QR+A+ARA+  +  +++LD+  +
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.322    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00001729

Length=1458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  109     5e-28
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  99.3    3e-23


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 109 bits (274),  Expect = 5e-28, Method: Composition-based stats.
 Identities = 48/156 (31%), Positives = 80/156 (51%), Gaps = 16/156 (10%)

Query  1235  LGDVSLTIKSGEKVGICGRTGSGKTSLIMSLFRMVELSSGSIHIDGVDITKIPRQEIRSR  1294
             L +VSLT+  GE + + G  G+GK++L+  +  ++  + G+I +DG D+T   R+ +R  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1295  INGVSQSPLLIKG-SIRRNM-------DPNGSYAEKAIIEAIKSVGLYTKIQEKGGLDTD  1346
             I  V Q P L    ++R N+         +    +    EA++ +GL          D  
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGL------GDLADRP  114

Query  1347  ISEVF--LSQGQQQLFCLARAILRPGKVLVLDEATS  1380
             + E    LS GQ+Q   +ARA+L   K+L+LDE T+
Sbjct  115   VGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 95.8 bits (239),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 23/155 (15%)

Query  643  LKGLTISIARGSFTMIVGPSGCGKSTLLKAILGEVPCVNGEIRL------------SSDS  690
            LK +++++  G    +VGP+G GKSTLLK I G +    G I L                
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  691  IAFCDQIPWHMNA-TIRESI---VAMSSFDKEWYASVVHACGLVQDFEQLPRGD--ETVI  744
            I +  Q P      T+RE++   + +    K    +        +  E+L  GD  +  +
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAE-----EALEKLGLGDLADRPV  115

Query  745  GSKGIALSGGQSQRIALARAVYARKDIVILDDAFS  779
            G +   LSGGQ QR+A+ARA+  +  +++LD+  +
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 99.3 bits (248),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 42/234 (18%), Positives = 80/234 (34%), Gaps = 7/234 (3%)

Query  939   YYLGIYAMLGAVGMLSLIIGCWEMVINMVPKSGESFHRKLLATVLNAPMSFFAATDSGSI  998
               L +      +  L   +        +  +      RKL   +L  PMSFF     G +
Sbjct  46    ALLLLGLAQFILSFLQSYLLNH-TGERLSRRL----RRKLFKKILRQPMSFFDTNSVGEL  100

Query  999   LNRFSQDLQLIDMELPVAAINTFATLILCLAQMILMGIASRYAAISFPLVILAVYSIQKV  1058
             L+R + D   I   L       F +L   +  +I+M        +    V+     +  V
Sbjct  101   LSRLTNDTSKIRDGLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAV  160

Query  1059  YLRTSRQLRFLDLEAKAPLYSHFSDCLNGLVTLRAFGWQPALEDKNFQLLDYSQRPFYLL  1118
             + +  R+L   + +A A   S   + L+G+ T++AFG +    +K  + L+ + +     
Sbjct  161   FAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKK  220

Query  1119  YAIQRWLTLTLDMVVAAIAVILIVLVVTL--RGTISAGDVGVALLNVILFSQSI  1170
                          +      + +     L   G +S GD+   L         +
Sbjct  221   AVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.323    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1844111358


Query= TCONS_00007322

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  108     2e-28
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  101     1e-24


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 108 bits (273),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 48/156 (31%), Positives = 80/156 (51%), Gaps = 16/156 (10%)

Query  407  LGDVSLTIKSGEKVGICGRTGSGKTSLIMSLFRMVELSSGSIHIDGVDITKIPRQEIRSR  466
            L +VSLT+  GE + + G  G+GK++L+  +  ++  + G+I +DG D+T   R+ +R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  467  INGVSQSPLLIKG-SIRRNM-------DPNGSYAEKAIIEAIKSVGLYTKIQEKGGLDTD  518
            I  V Q P L    ++R N+         +    +    EA++ +GL          D  
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGL------GDLADRP  114

Query  519  ISEVF--LSQGQQQLFCLARAILRPGKVLVLDEATS  552
            + E    LS GQ+Q   +ARA+L   K+L+LDE T+
Sbjct  115  VGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 101 bits (255),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 42/234 (18%), Positives = 80/234 (34%), Gaps = 7/234 (3%)

Query  111  YYLGIYAMLGAVGMLSLIIGCWEMVINMVPKSGESFHRKLLATVLNAPMSFFAATDSGSI  170
              L +      +  L   +        +  +      RKL   +L  PMSFF     G +
Sbjct  46   ALLLLGLAQFILSFLQSYLLNH-TGERLSRRL----RRKLFKKILRQPMSFFDTNSVGEL  100

Query  171  LNRFSQDLQLIDMELPVAAINTFATLILCLAQMILMGIASRYAAISFPLVILAVYSIQKV  230
            L+R + D   I   L       F +L   +  +I+M        +    V+     +  V
Sbjct  101  LSRLTNDTSKIRDGLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAV  160

Query  231  YLRTSRQLRFLDLEAKAPLYSHFSDCLNGLVTLRAFGWQPALEDKNFQLLDYSQRPFYLL  290
            + +  R+L   + +A A   S   + L+G+ T++AFG +    +K  + L+ + +     
Sbjct  161  FAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKK  220

Query  291  YAIQRWLTLTLDMVVAAIAVILIVLVVTL--RGTISAGDVGVALLNVILFSQSI  342
                         +      + +     L   G +S GD+   L         +
Sbjct  221  AVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.320    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00001730

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  108     2e-28
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  101     1e-24


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 108 bits (273),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 48/156 (31%), Positives = 80/156 (51%), Gaps = 16/156 (10%)

Query  407  LGDVSLTIKSGEKVGICGRTGSGKTSLIMSLFRMVELSSGSIHIDGVDITKIPRQEIRSR  466
            L +VSLT+  GE + + G  G+GK++L+  +  ++  + G+I +DG D+T   R+ +R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  467  INGVSQSPLLIKG-SIRRNM-------DPNGSYAEKAIIEAIKSVGLYTKIQEKGGLDTD  518
            I  V Q P L    ++R N+         +    +    EA++ +GL          D  
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGL------GDLADRP  114

Query  519  ISEVF--LSQGQQQLFCLARAILRPGKVLVLDEATS  552
            + E    LS GQ+Q   +ARA+L   K+L+LDE T+
Sbjct  115  VGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 101 bits (255),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 42/234 (18%), Positives = 80/234 (34%), Gaps = 7/234 (3%)

Query  111  YYLGIYAMLGAVGMLSLIIGCWEMVINMVPKSGESFHRKLLATVLNAPMSFFAATDSGSI  170
              L +      +  L   +        +  +      RKL   +L  PMSFF     G +
Sbjct  46   ALLLLGLAQFILSFLQSYLLNH-TGERLSRRL----RRKLFKKILRQPMSFFDTNSVGEL  100

Query  171  LNRFSQDLQLIDMELPVAAINTFATLILCLAQMILMGIASRYAAISFPLVILAVYSIQKV  230
            L+R + D   I   L       F +L   +  +I+M        +    V+     +  V
Sbjct  101  LSRLTNDTSKIRDGLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAV  160

Query  231  YLRTSRQLRFLDLEAKAPLYSHFSDCLNGLVTLRAFGWQPALEDKNFQLLDYSQRPFYLL  290
            + +  R+L   + +A A   S   + L+G+ T++AFG +    +K  + L+ + +     
Sbjct  161  FAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKK  220

Query  291  YAIQRWLTLTLDMVVAAIAVILIVLVVTL--RGTISAGDVGVALLNVILFSQSI  342
                         +      + +     L   G +S GD+   L         +
Sbjct  221  AVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.320    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00001731

Length=133
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462471 pfam08423, Rad51, Rad51. Rad51 is a DNA repair and rec...  254     4e-88


>CDD:462471 pfam08423, Rad51, Rad51.  Rad51 is a DNA repair and recombination 
protein and is a homolog of the bacterial ATPase RecA protein.
Length=255

 Score = 254 bits (652),  Expect = 4e-88, Method: Composition-based stats.
 Identities = 96/122 (79%), Positives = 110/122 (90%), Gaps = 1/122 (1%)

Query  4    LLVVDSATSLYRTDFNGRGELSSRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDGGP  63
            LL+VDSAT+LYRTDF+GRGEL+ RQ HLAKF+RTLQRLADEFG+AVVITNQVVAQVDG  
Sbjct  135  LLIVDSATALYRTDFSGRGELAERQQHLAKFLRTLQRLADEFGVAVVITNQVVAQVDGA-  193

Query  64   SAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDGIG  123
            + MF+ DPKKPIGG+I+AHASTTRLSL+KGRGE R+CKIYDSPCLPES+ +FAI   GI 
Sbjct  194  AGMFSGDPKKPIGGHIMAHASTTRLSLRKGRGEQRICKIYDSPCLPESEAVFAIGSGGII  253

Query  124  DP  125
            DP
Sbjct  254  DP  255



Lambda      K        H        a         alpha
   0.317    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0899    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00007323

Length=276


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00001733

Length=276


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00001732

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00007324

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00007325

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.125    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00001734

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00007326

Length=698
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462370 pfam08144, CPL, CPL (NUC119) domain. This C terminal d...  120     2e-32


>CDD:462370 pfam08144, CPL, CPL (NUC119) domain.  This C terminal domain 
is fund in Penguin-like proteins associated with Pumilio like 
repeats.
Length=140

 Score = 120 bits (302),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 57/137 (42%), Positives = 78/137 (57%), Gaps = 10/137 (7%)

Query  474  NDLTARIPILFPFAGDRVKWLVPEVDQEVLKEIREIRKETSKKEPAVRRRELVKAASPTL  533
            ND   R  +L+  +G   ++  PEV  ++LKE  E  + TSKK+P VRR+EL++A SP L
Sbjct  1    NDKYGRRVLLYLLSGRDPRYFSPEV-IKLLKEGDENAETTSKKDPEVRRKELLEAISPAL  59

Query  534  LSFIAARAESLLETSFGCQFIAEVLFDADGDKMPALSAVASAAKVKSDMKD---------  584
            LS+IA  AE LL  + G QF+AEVL  A GDK  A+ A+A  A                 
Sbjct  60   LSYIAENAEELLSDNLGSQFVAEVLLSATGDKQEAIEAIAKLAAGDPVPGGIDEELHLIE  119

Query  585  SPFFGRLLKSLVQGGRF  601
             PF  R+LK+L+QG + 
Sbjct  120  HPFGHRVLKALIQGDKK  136



Lambda      K        H        a         alpha
   0.314    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 892247950


Query= TCONS_00007327

Length=698
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462370 pfam08144, CPL, CPL (NUC119) domain. This C terminal d...  120     2e-32


>CDD:462370 pfam08144, CPL, CPL (NUC119) domain.  This C terminal domain 
is fund in Penguin-like proteins associated with Pumilio like 
repeats.
Length=140

 Score = 120 bits (302),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 57/137 (42%), Positives = 78/137 (57%), Gaps = 10/137 (7%)

Query  474  NDLTARIPILFPFAGDRVKWLVPEVDQEVLKEIREIRKETSKKEPAVRRRELVKAASPTL  533
            ND   R  +L+  +G   ++  PEV  ++LKE  E  + TSKK+P VRR+EL++A SP L
Sbjct  1    NDKYGRRVLLYLLSGRDPRYFSPEV-IKLLKEGDENAETTSKKDPEVRRKELLEAISPAL  59

Query  534  LSFIAARAESLLETSFGCQFIAEVLFDADGDKMPALSAVASAAKVKSDMKD---------  584
            LS+IA  AE LL  + G QF+AEVL  A GDK  A+ A+A  A                 
Sbjct  60   LSYIAENAEELLSDNLGSQFVAEVLLSATGDKQEAIEAIAKLAAGDPVPGGIDEELHLIE  119

Query  585  SPFFGRLLKSLVQGGRF  601
             PF  R+LK+L+QG + 
Sbjct  120  HPFGHRVLKALIQGDKK  136



Lambda      K        H        a         alpha
   0.314    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 892247950


Query= TCONS_00001738

Length=698
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462370 pfam08144, CPL, CPL (NUC119) domain. This C terminal d...  120     2e-32


>CDD:462370 pfam08144, CPL, CPL (NUC119) domain.  This C terminal domain 
is fund in Penguin-like proteins associated with Pumilio like 
repeats.
Length=140

 Score = 120 bits (302),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 57/137 (42%), Positives = 78/137 (57%), Gaps = 10/137 (7%)

Query  474  NDLTARIPILFPFAGDRVKWLVPEVDQEVLKEIREIRKETSKKEPAVRRRELVKAASPTL  533
            ND   R  +L+  +G   ++  PEV  ++LKE  E  + TSKK+P VRR+EL++A SP L
Sbjct  1    NDKYGRRVLLYLLSGRDPRYFSPEV-IKLLKEGDENAETTSKKDPEVRRKELLEAISPAL  59

Query  534  LSFIAARAESLLETSFGCQFIAEVLFDADGDKMPALSAVASAAKVKSDMKD---------  584
            LS+IA  AE LL  + G QF+AEVL  A GDK  A+ A+A  A                 
Sbjct  60   LSYIAENAEELLSDNLGSQFVAEVLLSATGDKQEAIEAIAKLAAGDPVPGGIDEELHLIE  119

Query  585  SPFFGRLLKSLVQGGRF  601
             PF  R+LK+L+QG + 
Sbjct  120  HPFGHRVLKALIQGDKK  136



Lambda      K        H        a         alpha
   0.314    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 892247950


Query= TCONS_00001735

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00001737

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00001740

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00001739

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00001743

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00001741

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00001742

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00001744

Length=720
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462370 pfam08144, CPL, CPL (NUC119) domain. This C terminal d...  120     2e-32


>CDD:462370 pfam08144, CPL, CPL (NUC119) domain.  This C terminal domain 
is fund in Penguin-like proteins associated with Pumilio like 
repeats.
Length=140

 Score = 120 bits (304),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 57/137 (42%), Positives = 78/137 (57%), Gaps = 10/137 (7%)

Query  496  NDLTARIPILFPFAGDRVKWLVPEVDQEVLKEIREIRKETSKKEPAVRRRELVKAASPTL  555
            ND   R  +L+  +G   ++  PEV  ++LKE  E  + TSKK+P VRR+EL++A SP L
Sbjct  1    NDKYGRRVLLYLLSGRDPRYFSPEV-IKLLKEGDENAETTSKKDPEVRRKELLEAISPAL  59

Query  556  LSFIAARAESLLETSFGCQFIAEVLFDADGDKMPALSAVASAAKVKSDMKD---------  606
            LS+IA  AE LL  + G QF+AEVL  A GDK  A+ A+A  A                 
Sbjct  60   LSYIAENAEELLSDNLGSQFVAEVLLSATGDKQEAIEAIAKLAAGDPVPGGIDEELHLIE  119

Query  607  SPFFGRLLKSLVQGGRF  623
             PF  R+LK+L+QG + 
Sbjct  120  HPFGHRVLKALIQGDKK  136



Lambda      K        H        a         alpha
   0.314    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 910925152


Query= TCONS_00001746

Length=802


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.124    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1030247616


Query= TCONS_00001745

Length=845


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1076635500


Query= TCONS_00007328

Length=668


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 848004250


Query= TCONS_00007329

Length=650


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 821458030


Query= TCONS_00001747

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00007330

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00001749

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00001750

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00001751

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00001753

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.492    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00001754

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464318 pfam14792, DNA_pol_B_palm, DNA polymerase beta palm. T...  163     2e-50
CDD:464317 pfam14791, DNA_pol_B_thumb, DNA polymerase beta thumb....  105     4e-29
CDD:434152 pfam14716, HHH_8, Helix-hairpin-helix domain               84.1    4e-21
CDD:463069 pfam10391, DNA_pol_lambd_f, Fingers domain of DNA poly...  77.5    9e-19


>CDD:464318 pfam14792, DNA_pol_B_palm, DNA polymerase beta palm.  The catalytic 
region of DNA polymerase beta is split into three domains. 
An N-terminal fingers domain, a central palm domain and 
a C-terminal thumb domain. This entry represents the palm 
domain.
Length=110

 Score = 163 bits (415),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 59/112 (53%), Positives = 73/112 (65%), Gaps = 3/112 (3%)

Query  200  RIPRREVEAHGEIVRKAVQKADPGMQVIIGGSYRRGASDSGDIDLLITKDDATIEQITTM  259
            RIPR EVEA   IVRKA +  DP ++VI+ GSYRRGA  SGD+D+LIT  D T E     
Sbjct  1    RIPREEVEALEAIVRKAAKTLDPDVEVIVCGSYRRGAESSGDVDILITHPDGTSESELKG  60

Query  260  MMDTVIPRLFQDGFLQVSLASTSRGDGSKWHGASVLPGSK-IWRRIDLLFVP  310
            ++D ++ RL + GFL   LA  S   GSKW G   LPGS+ + RRID+L VP
Sbjct  61   LLDRLVARLKKSGFLTDDLAVDS--GGSKWMGVCRLPGSERLHRRIDILVVP  110


>CDD:464317 pfam14791, DNA_pol_B_thumb, DNA polymerase beta thumb.  The catalytic 
region of DNA polymerase beta is split into three domains. 
An N-terminal fingers domain, a central palm domain 
and a C-terminal thumb domain. This entry represents the thumb 
domain.
Length=63

 Score = 105 bits (266),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 10/72 (14%)

Query  317  ALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYADVQCGEQRRKLSEGRLLEGRNERRIFE  376
            AL+YFTG+  FNR +RLLA KKG++LN+ GL+           L +G LLEG  E  IFE
Sbjct  1    ALLYFTGSKEFNRDLRLLAKKKGLKLNEYGLF----------DLKDGELLEGETEEDIFE  50

Query  377  ILGVPWRPPEHR  388
             LG+P+ PPE R
Sbjct  51   ALGLPYIPPELR  62


>CDD:434152 pfam14716, HHH_8, Helix-hairpin-helix domain.  
Length=67

 Score = 84.1 bits (209),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 23/66 (35%), Positives = 37/66 (56%), Gaps = 1/66 (2%)

Query  65   NCKTIEVLQQMLDYYTRTS-DQWRTLAYRKAIAALRRQPRKIVTRAQALAIPGIGPRLAD  123
            N +  + L+++ D       D +R  AYR+A  AL   P +I +  +   +PGIG ++A 
Sbjct  1    NQEIADALEELADLLELKGEDPFRVRAYRRAARALEALPEEITSLEELTKLPGIGKKIAA  60

Query  124  KIEEIV  129
            KIEEI+
Sbjct  61   KIEEIL  66


>CDD:463069 pfam10391, DNA_pol_lambd_f, Fingers domain of DNA polymerase 
lambda.  DNA polymerases catalyze the addition of dNMPs onto 
the 3-prime ends of DNA chains. There is a general polymerase 
fold consisting of three subdomains that have been likened 
to the fingers, palm, and thumb of a right hand. DNA_pol_lambd_f 
is the central three-helical region of DNA polymerase 
lambda referred to as the F and G helices of the fingers domain. 
Contacts with DNA involve this conserved helix-hairpin-helix 
motif in the fingers region which interacts with the 
primer strand. This motif is common to several DNA binding proteins 
and confers a sequence-independent interaction with 
the DNA backbone.
Length=51

 Score = 77.5 bits (192),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 37/50 (74%), Gaps = 2/50 (4%)

Query  150  QEFLGVYGAGISQASRWIAQGYRTLDDLKTK--AALTRSQRIGVEHYHDF  197
            + F G+YG G + A +W AQGYRTLDDL+ K  A LTR Q+IG+++Y DF
Sbjct  1    KLFTGIYGVGPTTARKWYAQGYRTLDDLREKKTAKLTRQQQIGLKYYDDF  50



Lambda      K        H        a         alpha
   0.319    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00001755

Length=86
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:289148 pfam12352, V-SNARE_C, Snare region anchored in the ves...  54.2    3e-12


>CDD:289148 pfam12352, V-SNARE_C, Snare region anchored in the vesicle membrane 
C-terminus.  Within the SNARE proteins interactions in 
the C-terminal half of the SNARE helix are critical to the 
driving of membrane fusion; whereas interactions in the N-terminal 
half of the SNARE domain are important for promoting 
priming or docking of the vesicle pfam05008.
Length=66

 Score = 54.2 bits (131),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query  2   LEERGRIDESHNMIDGVLSQAYAINESFGLQRETLASINRRIVGAANKVPGMNALIGKIG  61
           L E  R+  SH + D  +S   AI E    QRETL     ++    N++   N+ +  I 
Sbjct  4   LREHDRLKNSHRIADETISIGQAILEDLHSQRETLKRARNKLHNTDNRLGKSNSTLRLI-  62

Query  62  TKRRR  66
             RRR
Sbjct  63  -NRRR  66



Lambda      K        H        a         alpha
   0.330    0.145    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00001756

Length=256
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371639 pfam11635, Med16, Mediator complex subunit 16. Mediato...  201     1e-60


>CDD:371639 pfam11635, Med16, Mediator complex subunit 16.  Mediator is a 
large complex of up to 33 proteins that is conserved from plants 
through fungi to humans - the number and representation 
of individual subunits varying with species. It is arranged 
into four different sections, a core, a head, a tail and a 
kinase-activity part, and the number of subunits within each 
of these is what varies with species. Overall, Mediator regulates 
the transcriptional activity of RNA polymerase II but 
it would appear that each of the four different sections has 
a slightly different function. Med16 is one of the subunits 
of the Tail portion of the Mediator complex and is required 
for lipopolysaccharide gene-expression. Several members including 
the human protein MED16 have one or more WD40 domains 
on them, pfam00400.
Length=755

 Score = 201 bits (514),  Expect = 1e-60, Method: Composition-based stats.
 Identities = 72/234 (31%), Positives = 105/234 (45%), Gaps = 27/234 (12%)

Query  1    MSRAFLRFICRGLRGIYAGYATAA----PLSGDARVYYAEIYQTLESAPIRIDAYEKFLA  56
            + RAFL  I R L  I+           PL G+++     +Y    ++P+ +D +E FL 
Sbjct  537  VPRAFLLKIIRALGRIHELLVKLPEDLYPLWGESKESLLPVY---NNSPVNLDVFETFLR  593

Query  57   GVDSAVRHAYHGAGFGDAERPGPEKELLVNARVPPVLVPAVSTILRQTVPALKTEIDRIT  116
             +D+ V  AY  AGFGD ER   E ELLV   +PP L   V  +L  T  +L +E+D   
Sbjct  594  ELDNLVLKAYEPAGFGDIER---EPELLVECEIPPSLPQLVKFLLTTTSSSLLSEVDLSA  650

Query  117  IYMGDYSWLGLSNDRRTEMYRRSRDVDIIKKIPCRPTASALPETNANANANQNGKSSTQV  176
            +Y  D SWLG+  D+R E Y R+  VDIIK +              +     +    T  
Sbjct  651  LYFYDTSWLGIGEDKRFENYVRTLLVDIIKGLVSSSF---------SKLGYDDSVYDTVR  701

Query  177  QQRRRRCVRCC-------EVSSDTHP-PRSLLSFRMIVKLGLLRACVCGGMWTL  222
            + +  +             VS   +P  R   + +    +G LR C+CGG W L
Sbjct  702  KLQLGKGKTQLRRCTRCGCVSEVGYPLVRKATAVKASWTMGWLRTCICGGAWYL  755



Lambda      K        H        a         alpha
   0.320    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00001757

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459954 pfam00831, Ribosomal_L29, Ribosomal L29 protein            70.9    2e-17


>CDD:459954 pfam00831, Ribosomal_L29, Ribosomal L29 protein.  
Length=56

 Score = 70.9 bits (175),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 1/54 (2%)

Query  72   LWGKSKEELSKQLEELKTELSQLRVQKIAAGASSKTQRIHDVRKSIARVLTVIN  125
            L   S EEL ++L+ELK EL  LR QK A G      RI +VR+ IAR+ TV+ 
Sbjct  3    LRELSDEELEEKLKELKKELFNLRFQK-ATGQLENPSRIREVRRDIARIKTVLR  55



Lambda      K        H        a         alpha
   0.314    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00001761

Length=521
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  121     7e-33


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 121 bits (306),  Expect = 7e-33, Method: Composition-based stats.
 Identities = 63/218 (29%), Positives = 93/218 (43%), Gaps = 45/218 (21%)

Query  141  GAGISTSAGIPDFRSTDGLFKSLQKKHNLKASGKLLFDAAVYQDESLTASFQDMVRSLSE  200
            GAGIST +GIPDFRS DGL+  L  +              V+  E      ++++     
Sbjct  1    GAGISTESGIPDFRSDDGLYAKLAPEELASPEAFFSNPELVWDPEPFYNIARELLPG---  57

Query  201  EAAKTCPTAFHHMLARLAQENRLTRLYTQNIDGIETSMPPLATQIPLNVKAPWPRTIQLH  260
               +  P   H+ +A+L  + +L RL TQNIDG+               +A   + ++LH
Sbjct  58   ---EAQPNPAHYFIAKLEDKGKLLRLITQNIDGLHE-------------RAGSKKVVELH  101

Query  261  GSLDKMVCQKCRHLLDFD--REMFNRPDAPECPECSKNNQFRIETGQRSHGIGKMRPRIV  318
            GS  K  C  C      +   E       P CP+C                 G ++P IV
Sbjct  102  GSFAKARCVSCHQKYTGETLYERIRPEKVPHCPQCG----------------GLLKPDIV  145

Query  319  LYNEHNPDE--EAITSVMNADIRSRPDALIVVGTSLKI  354
             + E+ PD+   A   +  AD+      LIV+GTSLK+
Sbjct  146  FFGENLPDKFHRAYEDLEEADL------LIVIGTSLKV  177



Lambda      K        H        a         alpha
   0.313    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0753    0.140     1.90     42.6     43.6 

Effective search space used: 651048380


Query= TCONS_00001760

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  99.2    7e-25


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 99.2 bits (248),  Expect = 7e-25, Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 85/209 (41%), Gaps = 45/209 (22%)

Query  4    VPDFRSTDGLFKSLQKKHNLKASGKLLFDAAVYQDESLTASFQDMVRSLSEEAAKTCPTA  63
            +PDFRS DGL+  L  +              V+  E      ++++        +  P  
Sbjct  10   IPDFRSDDGLYAKLAPEELASPEAFFSNPELVWDPEPFYNIARELLPG------EAQPNP  63

Query  64   FHHMLARLAQENRLTRLYTQNIDGIETSMPPLATQIPLNVKAPWPRTIQLHGSLDKMVCQ  123
             H+ +A+L  + +L RL TQNIDG+               +A   + ++LHGS  K  C 
Sbjct  64   AHYFIAKLEDKGKLLRLITQNIDGLHE-------------RAGSKKVVELHGSFAKARCV  110

Query  124  KCRHLLDFD--REMFNRPDAPECPECSKNNQFRIETGQRSHGIGKMRPRIVLYNEHNPDE  181
             C      +   E       P CP+C                 G ++P IV + E+ PD+
Sbjct  111  SCHQKYTGETLYERIRPEKVPHCPQCG----------------GLLKPDIVFFGENLPDK  154

Query  182  --EAITSVMNADIRSRPDALIVVGTSLKI  208
               A   +  AD+      LIV+GTSLK+
Sbjct  155  FHRAYEDLEEADL------LIVIGTSLKV  177



Lambda      K        H        a         alpha
   0.314    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00007331

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404323 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase     100     4e-27
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  71.1    8e-16


>CDD:404323 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.  
Length=178

 Score = 100 bits (252),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 83/178 (47%), Gaps = 11/178 (6%)

Query  23   DFDGTIVDSTDAIVKHWHRIGAELGVDPKTI--LATSHGRRSIDTIKLYDPS---KANWE  77
            DFDGT++D+ + I+K ++ +  E G    +   +    G    +  +    S   +   E
Sbjct  4    DFDGTLLDTEELIIKSFNYLLEEFGYGELSEEEILKFIGLPLREIFRYLGVSEDEEEKIE  63

Query  78   -YVSYIEGRIPKEYGSDAVEIPGARTLLNALDESGARWGVVTSGTRALVDGWLGVLNLKH  136
             Y+      +  +        PG + LL  L E G + G+VTS +R  V+ +L  L L+ 
Sbjct  64   FYLRKYNEELHDKLVK---PYPGIKELLEELKEQGYKLGIVTSKSRENVEEFLKQLGLED  120

Query  137  P-KVLVVAEDVELGKPDPGCYLLGRSRLNLEHSTSLVVLEDAPSGIRAGKAAGFKVIA  193
               V+V  +DVE  KPDP   L    +L L+    + V  D+P  I A K AG KVIA
Sbjct  121  YFDVIVGGDDVEGKKPDPDPILKALEQLGLKPEEVIYV-GDSPRDIEAAKNAGIKVIA  177


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 71.1 bits (174),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 42/192 (22%), Positives = 69/192 (36%), Gaps = 21/192 (11%)

Query  17   FDGLLSDFDGTIVDSTDAIVKHWHRIGAE--------LGVDPKTILATSHGRRS-IDTIK  67
               ++ D DGT+ D    + +    + +E           +   I       R  +    
Sbjct  1    IKAVVFDLDGTLTDGEPVVTEAIAELASEHPLAKAIVAAAEDLPIPVEDFTARLLLGKRD  60

Query  68   LYDPSKANWEYVSYIEGRIPKEYGSDAVEI----------PGARTLLNALDESGARWGVV  117
              +        V  +E         + + +          PGA   L AL E G +  ++
Sbjct  61   WLEELDILRGLVETLEAEGLTVVLVELLGVIALADELKLYPGAAEALKALKERGIKVAIL  120

Query  118  TSGTRALVDGWLGVLNLKHP-KVLVVAEDVELGKPDPGCYLLGRSRLNLEHSTSLVVLED  176
            T       +  L +L L     V++  +DV +GKP P  YL    RL ++    L+V  D
Sbjct  121  TGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMV-GD  179

Query  177  APSGIRAGKAAG  188
              + I A KAAG
Sbjct  180  GVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.316    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00001762

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404323 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase     100     4e-27
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  71.1    8e-16


>CDD:404323 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.  
Length=178

 Score = 100 bits (252),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 83/178 (47%), Gaps = 11/178 (6%)

Query  23   DFDGTIVDSTDAIVKHWHRIGAELGVDPKTI--LATSHGRRSIDTIKLYDPS---KANWE  77
            DFDGT++D+ + I+K ++ +  E G    +   +    G    +  +    S   +   E
Sbjct  4    DFDGTLLDTEELIIKSFNYLLEEFGYGELSEEEILKFIGLPLREIFRYLGVSEDEEEKIE  63

Query  78   -YVSYIEGRIPKEYGSDAVEIPGARTLLNALDESGARWGVVTSGTRALVDGWLGVLNLKH  136
             Y+      +  +        PG + LL  L E G + G+VTS +R  V+ +L  L L+ 
Sbjct  64   FYLRKYNEELHDKLVK---PYPGIKELLEELKEQGYKLGIVTSKSRENVEEFLKQLGLED  120

Query  137  P-KVLVVAEDVELGKPDPGCYLLGRSRLNLEHSTSLVVLEDAPSGIRAGKAAGFKVIA  193
               V+V  +DVE  KPDP   L    +L L+    + V  D+P  I A K AG KVIA
Sbjct  121  YFDVIVGGDDVEGKKPDPDPILKALEQLGLKPEEVIYV-GDSPRDIEAAKNAGIKVIA  177


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 71.1 bits (174),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 42/192 (22%), Positives = 69/192 (36%), Gaps = 21/192 (11%)

Query  17   FDGLLSDFDGTIVDSTDAIVKHWHRIGAE--------LGVDPKTILATSHGRRS-IDTIK  67
               ++ D DGT+ D    + +    + +E           +   I       R  +    
Sbjct  1    IKAVVFDLDGTLTDGEPVVTEAIAELASEHPLAKAIVAAAEDLPIPVEDFTARLLLGKRD  60

Query  68   LYDPSKANWEYVSYIEGRIPKEYGSDAVEI----------PGARTLLNALDESGARWGVV  117
              +        V  +E         + + +          PGA   L AL E G +  ++
Sbjct  61   WLEELDILRGLVETLEAEGLTVVLVELLGVIALADELKLYPGAAEALKALKERGIKVAIL  120

Query  118  TSGTRALVDGWLGVLNLKHP-KVLVVAEDVELGKPDPGCYLLGRSRLNLEHSTSLVVLED  176
            T       +  L +L L     V++  +DV +GKP P  YL    RL ++    L+V  D
Sbjct  121  TGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMV-GD  179

Query  177  APSGIRAGKAAG  188
              + I A KAAG
Sbjct  180  GVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.316    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00007332

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00001763

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404323 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase      99     7e-27
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  70.3    2e-15


>CDD:404323 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.  
Length=178

 Score =  99 bits (250),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 57/179 (32%), Positives = 84/179 (47%), Gaps = 13/179 (7%)

Query  23   DFDGTIVDSTDAIVKHWHRIGAELGVDPKTI--LATSHGRRSIDTIKLYDPS---KANWE  77
            DFDGT++D+ + I+K ++ +  E G    +   +    G    +  +    S   +   E
Sbjct  4    DFDGTLLDTEELIIKSFNYLLEEFGYGELSEEEILKFIGLPLREIFRYLGVSEDEEEKIE  63

Query  78   CVSYIEGRIPKEYGSDA--VEIPGARTLLNALDESGARWGVVTSGTRALVDGWLGVLNLK  135
               Y+  R   E   D      PG + LL  L E G + G+VTS +R  V+ +L  L L+
Sbjct  64   F--YL--RKYNEELHDKLVKPYPGIKELLEELKEQGYKLGIVTSKSRENVEEFLKQLGLE  119

Query  136  HP-KVLVVAEDVELGKPDPGCYLLGRSRLNLEHSTSLVVLEDAPSGIRAGKAAGFKVIA  193
                V+V  +DVE  KPDP   L    +L L+    + V  D+P  I A K AG KVIA
Sbjct  120  DYFDVIVGGDDVEGKKPDPDPILKALEQLGLKPEEVIYV-GDSPRDIEAAKNAGIKVIA  177


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 70.3 bits (172),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 42/192 (22%), Positives = 72/192 (38%), Gaps = 21/192 (11%)

Query  17   FDGLLSDFDGTIVDSTDAIVKHWHRIGAELGVDPKTILATSHGRRSIDTI--KLYDPSKA  74
               ++ D DGT+ D    + +    + +E  +    + A       ++    +L    + 
Sbjct  1    IKAVVFDLDGTLTDGEPVVTEAIAELASEHPLAKAIVAAAEDLPIPVEDFTARLLLGKRD  60

Query  75   NWECVSYIEGRIPKEYGSDAVEI-----------------PGARTLLNALDESGARWGVV  117
              E +  + G +          +                 PGA   L AL E G +  ++
Sbjct  61   WLEELDILRGLVETLEAEGLTVVLVELLGVIALADELKLYPGAAEALKALKERGIKVAIL  120

Query  118  TSGTRALVDGWLGVLNLKHP-KVLVVAEDVELGKPDPGCYLLGRSRLNLEHSTSLVVLED  176
            T       +  L +L L     V++  +DV +GKP P  YL    RL ++    L+V  D
Sbjct  121  TGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMV-GD  179

Query  177  APSGIRAGKAAG  188
              + I A KAAG
Sbjct  180  GVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.316    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00001764

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404323 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase     100     4e-27
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  71.1    8e-16


>CDD:404323 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.  
Length=178

 Score = 100 bits (252),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 83/178 (47%), Gaps = 11/178 (6%)

Query  23   DFDGTIVDSTDAIVKHWHRIGAELGVDPKTI--LATSHGRRSIDTIKLYDPS---KANWE  77
            DFDGT++D+ + I+K ++ +  E G    +   +    G    +  +    S   +   E
Sbjct  4    DFDGTLLDTEELIIKSFNYLLEEFGYGELSEEEILKFIGLPLREIFRYLGVSEDEEEKIE  63

Query  78   -YVSYIEGRIPKEYGSDAVEIPGARTLLNALDESGARWGVVTSGTRALVDGWLGVLNLKH  136
             Y+      +  +        PG + LL  L E G + G+VTS +R  V+ +L  L L+ 
Sbjct  64   FYLRKYNEELHDKLVK---PYPGIKELLEELKEQGYKLGIVTSKSRENVEEFLKQLGLED  120

Query  137  P-KVLVVAEDVELGKPDPGCYLLGRSRLNLEHSTSLVVLEDAPSGIRAGKAAGFKVIA  193
               V+V  +DVE  KPDP   L    +L L+    + V  D+P  I A K AG KVIA
Sbjct  121  YFDVIVGGDDVEGKKPDPDPILKALEQLGLKPEEVIYV-GDSPRDIEAAKNAGIKVIA  177


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 71.1 bits (174),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 42/192 (22%), Positives = 69/192 (36%), Gaps = 21/192 (11%)

Query  17   FDGLLSDFDGTIVDSTDAIVKHWHRIGAE--------LGVDPKTILATSHGRRS-IDTIK  67
               ++ D DGT+ D    + +    + +E           +   I       R  +    
Sbjct  1    IKAVVFDLDGTLTDGEPVVTEAIAELASEHPLAKAIVAAAEDLPIPVEDFTARLLLGKRD  60

Query  68   LYDPSKANWEYVSYIEGRIPKEYGSDAVEI----------PGARTLLNALDESGARWGVV  117
              +        V  +E         + + +          PGA   L AL E G +  ++
Sbjct  61   WLEELDILRGLVETLEAEGLTVVLVELLGVIALADELKLYPGAAEALKALKERGIKVAIL  120

Query  118  TSGTRALVDGWLGVLNLKHP-KVLVVAEDVELGKPDPGCYLLGRSRLNLEHSTSLVVLED  176
            T       +  L +L L     V++  +DV +GKP P  YL    RL ++    L+V  D
Sbjct  121  TGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMV-GD  179

Query  177  APSGIRAGKAAG  188
              + I A KAAG
Sbjct  180  GVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.316    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00007334

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00001766

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00001767

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404323 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase     78.8    3e-19
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  64.9    7e-14


>CDD:404323 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.  
Length=178

 Score = 78.8 bits (195),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 53/99 (54%), Gaps = 2/99 (2%)

Query  51   EIPGARTLLNALDESGARWGVVTSGTRALVDGWLGVLNLKHP-KVLVVAEDVELGKPDPG  109
              PG + LL  L E G + G+VTS +R  V+ +L  L L+    V+V  +DVE  KPDP 
Sbjct  80   PYPGIKELLEELKEQGYKLGIVTSKSRENVEEFLKQLGLEDYFDVIVGGDDVEGKKPDPD  139

Query  110  CYLLGRSRLNLEHSTSLVVLEDAPSGIRAGKAAGFKVIA  148
              L    +L L+    + V  D+P  I A K AG KVIA
Sbjct  140  PILKALEQLGLKPEEVIYV-GDSPRDIEAAKNAGIKVIA  177


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 64.9 bits (158),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 32/92 (35%), Positives = 45/92 (49%), Gaps = 2/92 (2%)

Query  53   PGARTLLNALDESGARWGVVTSGTRALVDGWLGVLNLKHP-KVLVVAEDVELGKPDPGCY  111
            PGA   L AL E G +  ++T       +  L +L L     V++  +DV +GKP P  Y
Sbjct  101  PGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIY  160

Query  112  LLGRSRLNLEHSTSLVVLEDAPSGIRAGKAAG  143
            L    RL ++    L+V  D  + I A KAAG
Sbjct  161  LAALERLGVKPEEVLMV-GDGVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.314    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00007336

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00007337

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00001768

Length=697
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459649 pfam00046, Homeobox, Homeobox domain                       77.5    2e-18


>CDD:459649 pfam00046, Homeobox, Homeobox domain.  
Length=57

 Score = 77.5 bits (192),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  68   SRPRLTKEQVETLEAQFQAHPKPSSNVKRQLAAQTNLSLPRVANWFQNRRAKAKQ  122
             R   T EQ+E LE +FQ +P PS+  + +LAAQ  L+  +V  WFQNRRAK K+
Sbjct  3    KRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR  57



Lambda      K        H        a         alpha
   0.309    0.122    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 890773160


Query= TCONS_00007338

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459649 pfam00046, Homeobox, Homeobox domain                       77.5    2e-18


>CDD:459649 pfam00046, Homeobox, Homeobox domain.  
Length=57

 Score = 77.5 bits (192),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  68   SRPRLTKEQVETLEAQFQAHPKPSSNVKRQLAAQTNLSLPRVANWFQNRRAKAKQ  122
             R   T EQ+E LE +FQ +P PS+  + +LAAQ  L+  +V  WFQNRRAK K+
Sbjct  3    KRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR  57



Lambda      K        H        a         alpha
   0.309    0.122    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 763652708


Query= TCONS_00007339

Length=697
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459649 pfam00046, Homeobox, Homeobox domain                       77.5    2e-18


>CDD:459649 pfam00046, Homeobox, Homeobox domain.  
Length=57

 Score = 77.5 bits (192),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  68   SRPRLTKEQVETLEAQFQAHPKPSSNVKRQLAAQTNLSLPRVANWFQNRRAKAKQ  122
             R   T EQ+E LE +FQ +P PS+  + +LAAQ  L+  +V  WFQNRRAK K+
Sbjct  3    KRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR  57



Lambda      K        H        a         alpha
   0.309    0.122    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 890773160


Query= TCONS_00001769

Length=566


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.121    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00001770

Length=566


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.121    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00007340

Length=302


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.143    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00001772

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00001773

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00001774

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00001775

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00001776

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00001777

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397252 pfam03029, ATP_bind_1, Conserved hypothetical ATP bind...  246     2e-82


>CDD:397252 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein. 
 Members of this family are found in a range of archaea 
and eukaryotes and have hypothesized ATP binding activity.
Length=238

 Score = 246 bits (630),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 98/265 (37%), Positives = 142/265 (54%), Gaps = 28/265 (11%)

Query  8    VMGPAGAGKSTFCSALIQHLQTTRRSCFYVNLDPAAESFNYEPDLDIRELITLEDVMEEM  67
            V+GPAG+GK+TF  AL + L    R  + VNLDPAAE+  Y  D+DIRELIT+ DVME+ 
Sbjct  1    VVGPAGSGKTTFVGALSEILPLRGRPVYVVNLDPAAENLPYPADIDIRELITVADVMEDY  60

Query  68   ELGPNGGLIYCFEFLLQNLDFLSQALDPLSEEYLIIFDMPGQIELYTHIPLLPSLVQYLS  127
             LGPNG L    +F    LD+L + L    +    +FD PGQIEL+TH   L  +V+ L 
Sbjct  61   GLGPNGALTVAMDFGRITLDWLDEELKREDD--YYLFDTPGQIELFTHWDSLAIIVEALE  118

Query  128  RQGPLNINLCAAYLLESTFVIDKAKFFAGTLSAMSAMLMLEMPHVNILSKMDQVRDMVSR  187
             +G     L A YL+++  + D   FF+G L A+S ML L +P V  L+K D +      
Sbjct  119  SRGA----LGAVYLVDTRRLTDPTDFFSGLLYALSIMLRLGLPFVVALNKFDLLSL---E  171

Query  188  KELKRFVNVDVNLLQDEIGGAEEPVEGDPSSKDTLLSGRSFKRLNRAVGQLIDDFSMV-S  246
              LK F + +   L  E                  L    +++LN A+ + +D F +V  
Sbjct  172  FALKWFTDPEDLQLLLE------------------LDDGKYRKLNEAIREALDLFYLVPV  213

Query  247  FLKLDVQDEDSVAAVLSHIDDAIQF  271
            FL    +  +S+  +L+ ID+A+Q+
Sbjct  214  FLPDARERGESMEDLLTLIDEALQY  238



Lambda      K        H        a         alpha
   0.320    0.138    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00007342

Length=475


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 590476040


Query= TCONS_00001778

Length=90
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460852 pfam03224, V-ATPase_H_N, V-ATPase subunit H. The yeast...  55.0    4e-11


>CDD:460852 pfam03224, V-ATPase_H_N, V-ATPase subunit H.  The yeast Saccharomyces 
cerevisiae vacuolar H+-ATPase (V-ATPase) is a multisubunit 
complex responsible for acidifying organelles. It functions 
as an ATP dependent proton pump that transports protons 
across a lipid bilayer. This domain corresponds to the N 
terminal domain of the H subunit of V-ATPase. The N-terminal 
domain is required for the activation of the complex whereas 
the C-terminal domain is required for coupling ATP hydrolysis 
to proton translocation.
Length=314

 Score = 55.0 bits (133),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 23/83 (28%), Positives = 31/83 (37%), Gaps = 25/83 (30%)

Query  2    FWNQRKETIDPLIEILRAAAGTKDSSSASTLAGSSRAIEPGLSGGVGLQLLYRVLLVLWQ  61
            FW    + +  LI+ILR                     + G     GLQL Y  LL LW 
Sbjct  187  FWKA--DGVSTLIDILRD--------------------QTGSDNASGLQLQYYTLLCLWL  224

Query  62   LSFEGSLVGEGLQSY---VHHLT  81
            LSFE  +  E ++     +  L 
Sbjct  225  LSFEPKIAEELVEKKLELIPLLL  247



Lambda      K        H        a         alpha
   0.317    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00001779

Length=453


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00001780

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372049 pfam12329, TMF_DNA_bd, TATA element modulatory factor ...  63.5    2e-13


>CDD:372049 pfam12329, TMF_DNA_bd, TATA element modulatory factor 1 DNA binding. 
 This is the middle region of a family of TATA element 
modulatory factor 1 proteins conserved in eukaryotes that 
contains at its N-terminal section a number of leucine zippers 
that could potentially form coiled coil structures. The 
whole proteins bind to the TATA element of some RNA polymerase 
II promoters and repress their activity. by competing with 
the binding of TATA binding protein. TMFs are evolutionarily 
conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding 
Golgi protein, and contribute to Golgi organisation 
in animal and plant cells.
Length=74

 Score = 63.5 bits (155),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 35/66 (53%), Positives = 46/66 (70%), Gaps = 0/66 (0%)

Query  290  GSVEKQLREKDEKIALLLEEGQKLSKSEMDHRTAIKKLRQQLADNSKIQMETKKRTEKLE  349
             S+EK L+EKDE+IA L+EEG+KLSK E+     IKKLR +  +  K   E KK+ EKLE
Sbjct  1    SSLEKLLKEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKNKELEKEIAELKKKLEKLE  60

Query  350  RDLANL  355
            ++L NL
Sbjct  61   KELENL  66



Lambda      K        H        a         alpha
   0.303    0.118    0.295    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 723303152


Query= TCONS_00007343

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.125    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00007345

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.125    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00007344

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.125    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00001781

Length=788
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432481 pfam12325, TMF_TATA_bd, TATA element modulatory factor...  152     7e-44
CDD:372049 pfam12329, TMF_DNA_bd, TATA element modulatory factor ...  66.9    2e-14


>CDD:432481 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA 
binding.  This is the C-terminal conserved coiled coil region 
of a family of TATA element modulatory factor 1 proteins 
conserved in eukaryotes. The proteins bind to the TATA element 
of some RNA polymerase II promoters and repress their activity. 
by competing with the binding of TATA binding protein. 
TMF1_TATA_bd is the most conserved part of the TMFs. TMFs 
are evolutionarily conserved golgins that bind Rab6, a ubiquitous 
ras-like GTP-binding Golgi protein, and contribute to 
Golgi organisation in animal and plant cells. The Rab6-binding 
domain appears to be the same region as this C-terminal family.
Length=115

 Score = 152 bits (386),  Expect = 7e-44, Method: Composition-based stats.
 Identities = 72/115 (63%), Positives = 94/115 (82%), Gaps = 0/115 (0%)

Query  672  SESTVGAGPSVQLVERMSATVRRLESERAAAKDELARITRQRDEARKQVVDLMRESEEKK  731
            S ST GAGPSVQLVER+S+T+RRLE E A+ K+ELAR+  QRDEAR+++V LM+E+EE K
Sbjct  1    SVSTSGAGPSVQLVERLSSTIRRLEGELASLKEELARLEAQRDEARQEIVKLMKENEELK  60

Query  732  ASDARVQELETRLEDLDQRYQTTLELLGEKSEQVEELQADIADLKKIYRELVDST  786
                 ++ELE  L++L+QRY+TTLELLGEKSE+VEEL+AD+ DLK++YRE V   
Sbjct  61   ELKKELEELEKELKELEQRYETTLELLGEKSEEVEELKADVEDLKEMYREQVQQL  115


>CDD:372049 pfam12329, TMF_DNA_bd, TATA element modulatory factor 1 DNA binding. 
 This is the middle region of a family of TATA element 
modulatory factor 1 proteins conserved in eukaryotes that 
contains at its N-terminal section a number of leucine zippers 
that could potentially form coiled coil structures. The 
whole proteins bind to the TATA element of some RNA polymerase 
II promoters and repress their activity. by competing with 
the binding of TATA binding protein. TMFs are evolutionarily 
conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding 
Golgi protein, and contribute to Golgi organisation 
in animal and plant cells.
Length=74

 Score = 66.9 bits (164),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 35/66 (53%), Positives = 46/66 (70%), Gaps = 0/66 (0%)

Query  200  GSVEKQLREKDEKIALLLEEGQKLSKSEMDHRTAIKKLRQQLADNSKIQMETKKRTEKLE  259
             S+EK L+EKDE+IA L+EEG+KLSK E+     IKKLR +  +  K   E KK+ EKLE
Sbjct  1    SSLEKLLKEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKNKELEKEIAELKKKLEKLE  60

Query  260  RDLANL  265
            ++L NL
Sbjct  61   KELENL  66



Lambda      K        H        a         alpha
   0.305    0.120    0.309    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1009875488


Query= TCONS_00001782

Length=453


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00007346

Length=247


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0731    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00007347

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00001783

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00001784

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00001785

Length=479


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00001786

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00007349

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00007348

Length=292


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00007350

Length=772


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 986593056


Query= TCONS_00007351

Length=531


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 666189040


Query= TCONS_00007352

Length=425


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521922912


Query= TCONS_00007353

Length=447


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00007354

Length=437


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00007355

Length=521


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 651048380


Query= TCONS_00001787

Length=728


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 922566368


Query= TCONS_00001788

Length=738


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 937117888


Query= TCONS_00007356

Length=331


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00001789

Length=851
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461090 pfam03914, CBF, CBF/Mak21 family                           188     2e-56


>CDD:461090 pfam03914, CBF, CBF/Mak21 family.  
Length=151

 Score = 188 bits (480),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 75/165 (45%), Positives = 98/165 (59%), Gaps = 28/165 (17%)

Query  649  SIQALMLIQQLTASHQVGADRFYRTLYESLLDPRVATSSKQSLYLNLLFKALKNDLNLRR  708
            S+QAL L+ QL +SH     RFYR LYE LLDPR+  SSKQ+L+LNLL KAL       R
Sbjct  1    SLQALNLLFQLMSSHN---PRFYRALYELLLDPRLLHSSKQALFLNLLDKAL----PAAR  53

Query  709  VKAFVKRIVQVLGLHQPAFICGVFYLIRELEK-TFPGIQALFDQPEDNESDDEEVFRDVP  767
            V AFVKR++Q+     P+FICG+ YLI  L K   P +++L  + E+ E +++       
Sbjct  54   VAAFVKRLLQLALHAPPSFICGILYLISNLLKRHPPSLRSLLHREEEEEEEEK-------  106

Query  768  DEDDEQQAQPAVPEDKQQKPSTRYDPRKRDPEHSNADKTCLWELV  812
                         E K ++ S  YDPRKRDPE SNAD++ LWEL 
Sbjct  107  -------------EKKSEEGSDPYDPRKRDPEFSNADESSLWELE  138



Lambda      K        H        a         alpha
   0.311    0.128    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1085248584


Query= TCONS_00001790

Length=1112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461090 pfam03914, CBF, CBF/Mak21 family                           210     9e-64


>CDD:461090 pfam03914, CBF, CBF/Mak21 family.  
Length=151

 Score = 210 bits (538),  Expect = 9e-64, Method: Composition-based stats.
 Identities = 82/177 (46%), Positives = 107/177 (60%), Gaps = 28/177 (16%)

Query  649  SIQALMLIQQLTASHQVGADRFYRTLYESLLDPRVATSSKQSLYLNLLFKALKNDLNLRR  708
            S+QAL L+ QL +SH     RFYR LYE LLDPR+  SSKQ+L+LNLL KAL       R
Sbjct  1    SLQALNLLFQLMSSHN---PRFYRALYELLLDPRLLHSSKQALFLNLLDKAL----PAAR  53

Query  709  VKAFVKRIVQVLGLHQPAFICGVFYLIRELEK-TFPGIQALFDQPEDNESDDEEVFRDVP  767
            V AFVKR++Q+     P+FICG+ YLI  L K   P +++L  + E+ E +++E      
Sbjct  54   VAAFVKRLLQLALHAPPSFICGILYLISNLLKRHPPSLRSLLHREEEEEEEEKE------  107

Query  768  DEDDEQQAQPAVPEDKQQKPSTRYDPRKRDPEHSNADKTCLWELLPYLYHFHPSVSV  824
                           K ++ S  YDPRKRDPE SNAD++ LWEL   L H+HPSVS+
Sbjct  108  --------------KKSEEGSDPYDPRKRDPEFSNADESSLWELELLLKHYHPSVSL  150



Lambda      K        H        a         alpha
   0.309    0.128    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1417181570


Query= TCONS_00001791

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460255 pfam01571, GCV_T, Aminomethyltransferase folate-bindin...  296     4e-99
CDD:462554 pfam08669, GCV_T_C, Glycine cleavage T-protein C-termi...  76.4    6e-18


>CDD:460255 pfam01571, GCV_T, Aminomethyltransferase folate-binding domain. 
 This is a family of glycine cleavage T-proteins, part of 
the glycine cleavage multienzyme complex (GCV) found in bacteria 
and the mitochondria of eukaryotes. GCV catalyzes the 
catabolism of glycine in eukaryotes. The T-protein is an aminomethyl 
transferase.
Length=254

 Score = 296 bits (761),  Expect = 4e-99, Method: Composition-based stats.
 Identities = 114/280 (41%), Positives = 152/280 (54%), Gaps = 28/280 (10%)

Query  85   YDLHIARGAKMVPFAGYSMPLQYSDLSHVESHHWTREKASVFDVSHMVQHHLSGPGAMEL  144
            YD H+A GAK V FAG+ MP+QY     +  H   RE A +FDVSHM +  +SGP A   
Sbjct  1    YDRHVALGAKFVEFAGWEMPVQYGSNGILAEHRAVREAAGLFDVSHMGKIEVSGPDAAAF  60

Query  145  LMKVTPSSLDKLKPNSSTLSCLLEEGTGGIVDDTVITRLDGDAFYFVTNAGRRTEDLAFL  204
            L ++T + + KLKP  +T + +L E  GG++DD  + RL  D F  V NA  R +DLA+L
Sbjct  61   LQRLTTNDVSKLKPGRATYTLMLNE-RGGVIDDLTVYRLGDDHFLLVVNAANREKDLAWL  119

Query  205  QAEIEAYRQTHGADSIKWEILADRALVALQGPLAASVLQPLISSHGAASPADTDLSTLYF  264
            +   E        D +  ++  D AL+ALQGP A  VL+ L             L  L F
Sbjct  120  RKHAEKL------DVVVVDVTDDYALLALQGPKAREVLEKLTD--------GDLLEALPF  165

Query  265  GNCRSLHLTLPDGTPTPQPLLISRTGYTGEDGFEISIPTGGCPSLPTQVTELLLSNPEQ-  323
             + R + +          P+ +SRTGYTGEDGFEI +P         ++ E LL    + 
Sbjct  166  FSFREIEIGGV-------PVRVSRTGYTGEDGFEIYVP----AEDAVELWEALLEAGAEL  214

Query  324  -VRLAGLAARDSLRLEAGMCLYGNDISTAQTPPAAALGWV  362
             +R AGL ARDSLRLEAG+ LYG+D+    TP  A LGW 
Sbjct  215  GLRPAGLGARDSLRLEAGLPLYGHDLDEETTPLEAGLGWA  254


>CDD:462554 pfam08669, GCV_T_C, Glycine cleavage T-protein C-terminal barrel 
domain.  This is a family of glycine cleavage T-proteins, 
part of the glycine cleavage multienzyme complex (GCV) found 
in bacteria and the mitochondria of eukaryotes. GCV catalyzes 
the catabolism of glycine in eukaryotes. The T-protein 
is an aminomethyl transferase.
Length=80

 Score = 76.4 bits (189),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 32/83 (39%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query  395  RRVGFTVEKGSP-AREGAIVVDLGDESHPQIGVITSGLPSPSLGGTNIAMGYIKNGMHKK  453
            R VG  ++ G P  R G  V+  G+     +G +TSG  SP+LG  +IA+ Y+   + K 
Sbjct  2    RLVGLELDDGDPLLRGGEPVLRDGE----VVGYVTSGAYSPTLGK-SIALAYVDAELAKP  56

Query  454  GTEVGVLVRNKVRKATVTGMPWV  476
            GTEV V +R K   ATV  +P+ 
Sbjct  57   GTEVEVEIRGKRVPATVVKLPFY  79



Lambda      K        H        a         alpha
   0.316    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00001793

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  108     4e-26


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 108 bits (271),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 80/426 (19%), Positives = 155/426 (36%), Gaps = 33/426 (8%)

Query  66   RTCSWQKTAALLFSEYICLAIMSFPWSYSVLGLVPGLILTVVVAAIVLYTSLIIWRFCLR  125
             T S  +    L +  I   ++S P+++  LG +PGLIL ++V  I LYT+ ++ R C +
Sbjct  1    GTISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVR-CSK  59

Query  126  HPEVRDVC-----DIGQYLFWDSRIAWYMTAVMFLLNNTFIQGLHCLVGAKYLNTM----  176
               V         D+G  L         +     LLN   +   + +     L  +    
Sbjct  60   EVPVTGKRNKSYGDLGYRLL--GPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSF  117

Query  177  -TGHGACTIIWSLVTAIVSLVFSLPRTFSGLSKAATLSAIFTFVSVILAVIFSAVEDHPA  235
                    + + ++  ++ +  S     S LS  + L+A+ +   +++ V+  A      
Sbjct  118  FDTCPISLVYFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVA----EG  173

Query  236  GYSAAQGEPIVTAIPVVGTTFVSGVNAFLNISYTFIGQITLPSFIAEMKEPKDF---WKS  292
                AQG   + +             A   I + F G   L     EMK P  F    K 
Sbjct  174  IVLTAQGVGHLGSKT--NIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKI  231

Query  293  VTAVTIAEIVVFSLVGAIVYDYTGNQYMTAPAFGSIGNEVYKKVSFSFMVPTLIFLGV-L  351
            +    I   V++ L+G + Y   G+         ++    +     + ++   + L   L
Sbjct  232  LLTAIIIATVLYILIGLVGYLAFGDNVKG-NILLNLPKSAWLIDIANLLLVLHVILSFPL  290

Query  352  YASVSARFI---FFRLFDGTRHKGNHTVVGWASWTGILAVLWIMAFIIAEVIPFFSDLLS  408
                  + +    FR        G +          I + L ++ ++IA  +PFF DLLS
Sbjct  291  QLFPIRQIVENLLFRKEAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLS  350

Query  409  IMSSLFDSFFGFIFWGVAYLRMRYADHGPGFYKKRGIRGWVGFIVNIGLILTGLFFLGPG  468
            ++ +   +   FI   + +L+++          +  +       V    I+ GL  +  G
Sbjct  351  LVGATSCAPLSFILPPLFHLKLK----KTKKKSQEKLWKPDILDVIC--IVIGLLLMAYG  404

Query  469  TYAAVM  474
                ++
Sbjct  405  VAGLIL  410



Lambda      K        H        a         alpha
   0.327    0.140    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00001792

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  66.9    6e-13


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 66.9 bits (164),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 47/252 (19%), Positives = 93/252 (37%), Gaps = 14/252 (6%)

Query  10   IWSLVTAIVSLVFSLPRTFSGLSKAATLSAIFTFVSVILAVIFSAVEDHPAGYSAAQGEP  69
             + ++  ++ +  S     S LS  + L+A+ +   +++ V+  A          AQG  
Sbjct  127  YFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVA----EGIVLTAQGVG  182

Query  70   IVTAIPVVGTTFVSGVNAFLNISYTFIGQITLPSFIAEMKEPKDF---WKSVTAVTIAEI  126
             + +             A   I + F G   L     EMK P  F    K +    I   
Sbjct  183  HLGSKT--NIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIAT  240

Query  127  VVFSLVGAIVYDYTGNQYMTAPAFGSIGNEVYKKVSFSFMVPTLIFLGV-LYASVSARFI  185
            V++ L+G + Y   G+         ++    +     + ++   + L   L      + +
Sbjct  241  VLYILIGLVGYLAFGDNVKG-NILLNLPKSAWLIDIANLLLVLHVILSFPLQLFPIRQIV  299

Query  186  ---FFRLFDGTRHKGNHTVVGWASWTGILAVLWIMAFIIAEVIPFFSDLLSIMSSLFDSF  242
                FR        G +          I + L ++ ++IA  +PFF DLLS++ +   + 
Sbjct  300  ENLLFRKEAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAP  359

Query  243  FGFIFWGVAYLR  254
              FI   + +L+
Sbjct  360  LSFILPPLFHLK  371



Lambda      K        H        a         alpha
   0.329    0.142    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00001794

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460255 pfam01571, GCV_T, Aminomethyltransferase folate-bindin...  296     3e-99
CDD:462554 pfam08669, GCV_T_C, Glycine cleavage T-protein C-termi...  64.4    1e-13


>CDD:460255 pfam01571, GCV_T, Aminomethyltransferase folate-binding domain. 
 This is a family of glycine cleavage T-proteins, part of 
the glycine cleavage multienzyme complex (GCV) found in bacteria 
and the mitochondria of eukaryotes. GCV catalyzes the 
catabolism of glycine in eukaryotes. The T-protein is an aminomethyl 
transferase.
Length=254

 Score = 296 bits (760),  Expect = 3e-99, Method: Composition-based stats.
 Identities = 114/280 (41%), Positives = 152/280 (54%), Gaps = 28/280 (10%)

Query  85   YDLHIARGAKMVPFAGYSMPLQYSDLSHVESHHWTREKASVFDVSHMVQHHLSGPGAMEL  144
            YD H+A GAK V FAG+ MP+QY     +  H   RE A +FDVSHM +  +SGP A   
Sbjct  1    YDRHVALGAKFVEFAGWEMPVQYGSNGILAEHRAVREAAGLFDVSHMGKIEVSGPDAAAF  60

Query  145  LMKVTPSSLDKLKPNSSTLSCLLEEGTGGIVDDTVITRLDGDAFYFVTNAGRRTEDLAFL  204
            L ++T + + KLKP  +T + +L E  GG++DD  + RL  D F  V NA  R +DLA+L
Sbjct  61   LQRLTTNDVSKLKPGRATYTLMLNE-RGGVIDDLTVYRLGDDHFLLVVNAANREKDLAWL  119

Query  205  QAEIEAYRQTHGADSIKWEILADRALVALQGPLAASVLQPLISSHGAASPADTDLSTLYF  264
            +   E        D +  ++  D AL+ALQGP A  VL+ L             L  L F
Sbjct  120  RKHAEKL------DVVVVDVTDDYALLALQGPKAREVLEKLTD--------GDLLEALPF  165

Query  265  GNCRSLHLTLPDGTPTPQPLLISRTGYTGEDGFEISIPTGGCPSLPTQVTELLLSNPEQ-  323
             + R + +          P+ +SRTGYTGEDGFEI +P         ++ E LL    + 
Sbjct  166  FSFREIEIGGV-------PVRVSRTGYTGEDGFEIYVP----AEDAVELWEALLEAGAEL  214

Query  324  -VRLAGLAARDSLRLEAGMCLYGNDISTAQTPPAAALGWV  362
             +R AGL ARDSLRLEAG+ LYG+D+    TP  A LGW 
Sbjct  215  GLRPAGLGARDSLRLEAGLPLYGHDLDEETTPLEAGLGWA  254


>CDD:462554 pfam08669, GCV_T_C, Glycine cleavage T-protein C-terminal barrel 
domain.  This is a family of glycine cleavage T-proteins, 
part of the glycine cleavage multienzyme complex (GCV) found 
in bacteria and the mitochondria of eukaryotes. GCV catalyzes 
the catabolism of glycine in eukaryotes. The T-protein 
is an aminomethyl transferase.
Length=80

 Score = 64.4 bits (158),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query  395  RRVGFTVEKGSP-AREGAIVVDLGDESHPQIGVITSGLPSPSLGGTNIAMGYIKNGMHKK  453
            R VG  ++ G P  R G  V+  G+     +G +TSG  SP+LG  +IA+ Y+   + K 
Sbjct  2    RLVGLELDDGDPLLRGGEPVLRDGE----VVGYVTSGAYSPTLGK-SIALAYVDAELAKP  56

Query  454  GTEVGVLVRNK  464
            GTEV V +R K
Sbjct  57   GTEVEVEIRGK  67



Lambda      K        H        a         alpha
   0.316    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0602    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00007357

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  109     2e-26


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 109 bits (274),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 80/425 (19%), Positives = 154/425 (36%), Gaps = 33/425 (8%)

Query  66   RTCSWQKTAALLFSEYICLAIMSFPWSYSVLGLVPGLILTVVVAAIVLYTSLIIWRFCLR  125
             T S  +    L +  I   ++S P+++  LG +PGLIL ++V  I LYT+ ++ R C +
Sbjct  1    GTISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVR-CSK  59

Query  126  HPEVRDVC-----DIGQYLFWDSRIAWYMTAVMFLLNNTFIQGLHCLVGAKYLNTM----  176
               V         D+G  L         +     LLN   +   + +     L  +    
Sbjct  60   EVPVTGKRNKSYGDLGYRLL--GPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSF  117

Query  177  -TGHGACTIIWSLVTAIVSLVFSLPRTFSGLSKAATLSAIFTFVSVILAVIFSAVEDHPA  235
                    + + ++  ++ +  S     S LS  + L+A+ +   +++ V+  A      
Sbjct  118  FDTCPISLVYFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVA----EG  173

Query  236  GYSAAQGEPIVTAIPVVGTTFVSGVNAFLNISYTFIGQITLPSFIAEMKEPKDF---WKS  292
                AQG   + +             A   I + F G   L     EMK P  F    K 
Sbjct  174  IVLTAQGVGHLGSKT--NIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKI  231

Query  293  VTAVTIAEIVVFSLVGAIVYDYTGNQYMTAPAFGSIGNEVYKKVSFSFMVPTLIFLGV-L  351
            +    I   V++ L+G + Y   G+         ++    +     + ++   + L   L
Sbjct  232  LLTAIIIATVLYILIGLVGYLAFGDNVKG-NILLNLPKSAWLIDIANLLLVLHVILSFPL  290

Query  352  YASVSARFI---FFRLFDGTRHKGNHTVVGWASWTGILAVLWIMAFIIAEVIPFFSDLLS  408
                  + +    FR        G +          I + L ++ ++IA  +PFF DLLS
Sbjct  291  QLFPIRQIVENLLFRKEAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLS  350

Query  409  IMSSLFDSFFGFIFWGVAYLRMRYADHGPGFYKKRGIRGWVGFIVNIGLILTGLFFLGPG  468
            ++ +   +   FI   + +L+++          +  +       V    I+ GL  +  G
Sbjct  351  LVGATSCAPLSFILPPLFHLKLK----KTKKKSQEKLWKPDILDVIC--IVIGLLLMAYG  404

Query  469  TYVSL  473
                +
Sbjct  405  VAGLI  409



Lambda      K        H        a         alpha
   0.327    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00001795

Length=71
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429762 pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 9...  93.7    5e-25


>CDD:429762 pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92.  Members 
of this family are alpha-1,2-mannosidases, enzymes which 
remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) 
by hydrolysis. They are critical for the maturation of 
N-linked oligosaccharides and ER-associated degradation.
Length=465

 Score = 93.7 bits (234),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 30/70 (43%), Positives = 42/70 (60%), Gaps = 12/70 (17%)

Query  2    TRSISRTLEYSYNDFTISQMARGMKKTADAEKYESTSGYWRNLFREDQTSFVNGSDTGFK  61
            T S+SRTLEY+Y+DF I+Q+A+ + KT DAEK+   S  +RNLF  +             
Sbjct  199  TESVSRTLEYAYDDFAIAQLAKALGKTEDAEKFLKRSQNYRNLFDPE------------T  246

Query  62   GFFQPRYLNG  71
            GF +PR  +G
Sbjct  247  GFMRPRDADG  256



Lambda      K        H        a         alpha
   0.317    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00001796

Length=311


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00001797

Length=306


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00001798

Length=306


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00007360

Length=309


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00007361

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00001799

Length=302


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00001800

Length=309


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00001802

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.125    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00007362

Length=90
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like...  63.7    7e-16


>CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like.  The 
small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, 
and although SUMO-1 shares structural similarity to Ub, 
SUMO's cellular functions remain distinct insomuch as SUMO 
modification alters protein function through changes in activity, 
cellular localization, or by protecting substrates from 
ubiquitination. Rad60 family members contain functionally 
enigmatic, integral SUMO-like domains (SLDs). Despite their 
divergence from SUMO, each Rad60 SLD interacts with a subset 
of SUMO pathway enzymes: SLD2 specifically binds the SUMO 
E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO 
E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called 
Siz1 and Siz2) specificity enzymes. Structural analysis 
of Structure 2uyz reveals a mechanistic basis for the near-synonymous 
roles of Rad60 and SUMO in survival of genotoxic 
stress and suggest unprecedented DNA-damage-response functions 
for SLDs in regulating SUMOylation. The Rad60 branch of this 
family is also known as RENi (Rad60-Esc2-Nip45), and biologically 
it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45).
Length=72

 Score = 63.7 bits (156),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 21/59 (36%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query  19  LNIKVTD-NNNEVFFKIKRTTQLKKLMDAFCERQGKQLST-VRFLFDGTRVRPEDTPDS  75
           + I +   +  EVF K+K TT + KL++A+ +++G   S  VR +FDG R+ P  T + 
Sbjct  1   IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVED  59



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00001808

Length=90
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like...  63.7    7e-16


>CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like.  The 
small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, 
and although SUMO-1 shares structural similarity to Ub, 
SUMO's cellular functions remain distinct insomuch as SUMO 
modification alters protein function through changes in activity, 
cellular localization, or by protecting substrates from 
ubiquitination. Rad60 family members contain functionally 
enigmatic, integral SUMO-like domains (SLDs). Despite their 
divergence from SUMO, each Rad60 SLD interacts with a subset 
of SUMO pathway enzymes: SLD2 specifically binds the SUMO 
E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO 
E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called 
Siz1 and Siz2) specificity enzymes. Structural analysis 
of Structure 2uyz reveals a mechanistic basis for the near-synonymous 
roles of Rad60 and SUMO in survival of genotoxic 
stress and suggest unprecedented DNA-damage-response functions 
for SLDs in regulating SUMOylation. The Rad60 branch of this 
family is also known as RENi (Rad60-Esc2-Nip45), and biologically 
it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45).
Length=72

 Score = 63.7 bits (156),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 21/59 (36%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query  19  LNIKVTD-NNNEVFFKIKRTTQLKKLMDAFCERQGKQLST-VRFLFDGTRVRPEDTPDS  75
           + I +   +  EVF K+K TT + KL++A+ +++G   S  VR +FDG R+ P  T + 
Sbjct  1   IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVED  59



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00001809

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.122    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00001810

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430360 pfam08991, MTCP1, Mature-T-Cell Proliferation I type. ...  89.3    3e-26


>CDD:430360 pfam08991, MTCP1, Mature-T-Cell Proliferation I type.  Members 
of this family adopt a coiled coil structure, with two antiparallel 
alpha-helices that are tightly strapped together by 
two disulfide bridges at each end. The protein sequence shows 
a cysteine motif, required for the stabilisation of the 
coiled-coil-like structure. Additional inter-helix hydrophobic 
contacts impart stability to this scaffold. The precise function 
of this eukaryotic domain is, as yet, unknown. MTCP1 
is found in mitochondria. Mature-T-Cell Proliferation) is the 
first gene unequivocally identified in the group of uncommon 
leukemias with a mature phenotype.
Length=58

 Score = 89.3 bits (222),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 37/58 (64%), Positives = 46/58 (79%), Gaps = 0/58 (0%)

Query  13  PCHPRACAIQACLTKNSYKEERCQAQINALYECCNAFYQEKGEDAKTPSCPKPSLLKL  70
           PC P ACAIQ CL +N+Y E +CQ  I+ALYECC  FY+E G+DA++ SCPKPSLL+L
Sbjct  1   PCKPEACAIQDCLQRNNYNESKCQKVIDALYECCKKFYKENGDDARSVSCPKPSLLRL  58



Lambda      K        H        a         alpha
   0.317    0.132    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00001811

Length=74
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430360 pfam08991, MTCP1, Mature-T-Cell Proliferation I type. ...  74.6    1e-20


>CDD:430360 pfam08991, MTCP1, Mature-T-Cell Proliferation I type.  Members 
of this family adopt a coiled coil structure, with two antiparallel 
alpha-helices that are tightly strapped together by 
two disulfide bridges at each end. The protein sequence shows 
a cysteine motif, required for the stabilisation of the 
coiled-coil-like structure. Additional inter-helix hydrophobic 
contacts impart stability to this scaffold. The precise function 
of this eukaryotic domain is, as yet, unknown. MTCP1 
is found in mitochondria. Mature-T-Cell Proliferation) is the 
first gene unequivocally identified in the group of uncommon 
leukemias with a mature phenotype.
Length=58

 Score = 74.6 bits (184),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 29/48 (60%), Positives = 38/48 (79%), Gaps = 0/48 (0%)

Query  18  ACLTKNSYKEERCQAQINALYECCNAFYQEKGEDAKTPSCPKPSLLKL  65
            CL +N+Y E +CQ  I+ALYECC  FY+E G+DA++ SCPKPSLL+L
Sbjct  11  DCLQRNNYNESKCQKVIDALYECCKKFYKENGDDARSVSCPKPSLLRL  58



Lambda      K        H        a         alpha
   0.315    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00001812

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00001814

Length=74
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430360 pfam08991, MTCP1, Mature-T-Cell Proliferation I type. ...  74.6    1e-20


>CDD:430360 pfam08991, MTCP1, Mature-T-Cell Proliferation I type.  Members 
of this family adopt a coiled coil structure, with two antiparallel 
alpha-helices that are tightly strapped together by 
two disulfide bridges at each end. The protein sequence shows 
a cysteine motif, required for the stabilisation of the 
coiled-coil-like structure. Additional inter-helix hydrophobic 
contacts impart stability to this scaffold. The precise function 
of this eukaryotic domain is, as yet, unknown. MTCP1 
is found in mitochondria. Mature-T-Cell Proliferation) is the 
first gene unequivocally identified in the group of uncommon 
leukemias with a mature phenotype.
Length=58

 Score = 74.6 bits (184),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 29/48 (60%), Positives = 38/48 (79%), Gaps = 0/48 (0%)

Query  18  ACLTKNSYKEERCQAQINALYECCNAFYQEKGEDAKTPSCPKPSLLKL  65
            CL +N+Y E +CQ  I+ALYECC  FY+E G+DA++ SCPKPSLL+L
Sbjct  11  DCLQRNNYNESKCQKVIDALYECCKKFYKENGDDARSVSCPKPSLLRL  58



Lambda      K        H        a         alpha
   0.315    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00001813

Length=74
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430360 pfam08991, MTCP1, Mature-T-Cell Proliferation I type. ...  74.6    1e-20


>CDD:430360 pfam08991, MTCP1, Mature-T-Cell Proliferation I type.  Members 
of this family adopt a coiled coil structure, with two antiparallel 
alpha-helices that are tightly strapped together by 
two disulfide bridges at each end. The protein sequence shows 
a cysteine motif, required for the stabilisation of the 
coiled-coil-like structure. Additional inter-helix hydrophobic 
contacts impart stability to this scaffold. The precise function 
of this eukaryotic domain is, as yet, unknown. MTCP1 
is found in mitochondria. Mature-T-Cell Proliferation) is the 
first gene unequivocally identified in the group of uncommon 
leukemias with a mature phenotype.
Length=58

 Score = 74.6 bits (184),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 29/48 (60%), Positives = 38/48 (79%), Gaps = 0/48 (0%)

Query  18  ACLTKNSYKEERCQAQINALYECCNAFYQEKGEDAKTPSCPKPSLLKL  65
            CL +N+Y E +CQ  I+ALYECC  FY+E G+DA++ SCPKPSLL+L
Sbjct  11  DCLQRNNYNESKCQKVIDALYECCKKFYKENGDDARSVSCPKPSLLRL  58



Lambda      K        H        a         alpha
   0.315    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00001815

Length=1053
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461184 pfam04121, Nup84_Nup100, Nuclear pore protein 84 / 107...  559     0.0  


>CDD:461184 pfam04121, Nup84_Nup100, Nuclear pore protein 84 / 107.  Nup84p 
forms a complex with five proteins, of which Nup120p, Nup85p, 
Sec13p, and a Sec13p homologs. This Nup84p complex in conjunction 
with Sec13-type proteins is required for correct 
nuclear pore biogenesis.
Length=702

 Score = 559 bits (1442),  Expect = 0.0, Method: Composition-based stats.
 Identities = 247/821 (30%), Positives = 367/821 (45%), Gaps = 137/821 (17%)

Query  211   LQRLQLEANTWQLLLNLISIDDPPSKASCKKAQETVFQKLHRYSSDREVWESFLSADHYA  270
             L+ L+LEANTW LL  L S     +     + +E     +H YSS++E+WE  L  D   
Sbjct  1     LENLELEANTWDLLERLYSDRLSSASE---EDEEMELLPVHPYSSEKELWEQLLQKDPLL  57

Query  271   LECVIIMKWLERTATTTPQDIDSLISELESQAERGQGHWTHGWLYTKETIKGQKRLRAWP  330
              E  +++ WLE  A          I               HGWL T  +IKG+KRLR WP
Sbjct  58    RELQLVIDWLEENAPEPEDPEGPDI--------------DHGWLNTLHSIKGKKRLRGWP  103

Query  331   QPLEPKDPGITASLLTSDVSEPLITQLDPDAVTRQKQHLQKQDQFYERATWMTCWKMLRQ  390
              P                 SEPL+TQLDPDA  RQ + L   D+  ERA W   +++LR 
Sbjct  104   GP----------------SSEPLVTQLDPDAPLRQGRPLDPLDEEDERALWKAIFELLRA  147

Query  391   GENWTKIRDWAEERLENWKAVSLCGS--SVDPESGGERTPVDDGMTRMMNFRSQESWRAA  448
             G    + R+  +ER ++W+A SL G     DP   GE     D +  +    S+  WR  
Sbjct  148   G-RLEEARELCKERGQSWRAASLEGWQLYHDPNIDGE----LDELEPVEGNPSRALWRRT  202

Query  449   CSALARNPHIEDFERAVYALLCGETEAAFKVCQSWDDYLYVHFNSVVLSRYQGFCKQFRR  508
             C AL++N +++D+ERA+Y  L G+  +   VC+SW+D+L+ + N+++  + +   ++   
Sbjct  203   CYALSQNGNLDDYERAIYGALSGDLPSVLPVCRSWEDHLWAYLNALLDIQVENELRELCP  262

Query  509   KLSHS-PTAPVN------FVPEPVGYSDFNKFVQYTKGNERIGVEARNPYRTIQAAILGK  561
             K     P    +       +P P+   +    +   K + R+  EA +P R IQ AI+  
Sbjct  263   KRYAPLPDEYFSSFELVLPLPSPLSTEEILNLLSSLK-SPRVRDEAEHPLRVIQGAIILD  321

Query  562   GYDTFFYSLAKAVSQVAKTGSEDSFVPDLSPTHVDDSLLIAAEDDDALRIATHLYIIASS  621
               D+   SL   +S VAK                +++     ED   LR   HL +    
Sbjct  322   DIDSLLESLGDWLSDVAK---------------GNETENDLLEDPYLLRFLAHLILFLRL  366

Query  622   IGYVRSDTQFFETASVNVI-GYIANLEDAGIYEAIPLYASLLPAPQTHSVLGRVLIEILD  680
             +GY  S  Q  E A  N+I  YI+ L  AG+YE IPLYAS LP  +   V  R L  I D
Sbjct  367   LGYDPS--QVDEEAKENIITAYISYLRLAGLYELIPLYASFLPEERAVEVYSRFLESITD  424

Query  681   PRERKQQVRLIEKYDINIEAVLEDQWNWISSTVSAVEHTRTVKRYPKVVRRDDGTRELVP  740
             P ER+ Q+ L  K  +++EA+L+     +     +      +                  
Sbjct  425   PEERRLQLELARKLGLDVEAILKRTVERVFRETESEYGPLDL------------------  466

Query  741   VKTDFIGTEISRSDERLIRSLEWLRYVDGQWGRICHLGAFLYRKFYLSGKLAAARELSRR  800
             +    I +E++  D +LIRSLEWL +V GQ+         LYR+F L+GKLAAAREL  R
Sbjct  467   ISEILIDSEVTEEDLKLIRSLEWLLFVPGQYEEALEQANALYRRFLLNGKLAAARELFER  526

Query  801   MKLSDISRESFGFDVAEFGYGIPNGSDRATPEPSSPTKSRLLGSAHKLNRPIPNGVPSDE  860
             +  SD+ +E              N S  + PE                            
Sbjct  527   LNPSDLIKEY---------DLELNSSTDSLPE----------------------------  549

Query  861   QTNILVMQSQTMRDLEELTLAFDGLERFGLCWKK-IDKSKRRRDSGAVKDLRDELQDTLD  919
                 L   ++     E L  A D  E     W K     K ++DS  +K  + +L++   
Sbjct  550   ---ELENAAREYLCYEALLEALDSFEE----WFKLFSLLKPKKDSENLKRWKQKLKELTK  602

Query  920   EISMHVDAVLD-EWLTAPADEAEEAELEE-----IRVTYIPELFLDYHNALYFSAHVLTS  973
             +    +  VL   WL    ++AEE +  +     IR  YIPEL L  H+ L+ +  +L S
Sbjct  603   QAKELIYNVLLGGWLVDLTEDAEEDDERKHELEEIRQLYIPELILALHSVLHSAGTIL-S  661

Query  974   EILVQCMNLAMQVSENEY-LTRSFVSSRRMAELVDALALSS  1013
             E L +C+ LA  V++ +  L   FV S R+ EL+  +A SS
Sbjct  662   ENLKECLELANLVADEDSKLYEVFVKSGRLKELLQKVAESS  702



Lambda      K        H        a         alpha
   0.315    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1354993332


Query= TCONS_00001816

Length=963
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461184 pfam04121, Nup84_Nup100, Nuclear pore protein 84 / 107...  548     0.0  


>CDD:461184 pfam04121, Nup84_Nup100, Nuclear pore protein 84 / 107.  Nup84p 
forms a complex with five proteins, of which Nup120p, Nup85p, 
Sec13p, and a Sec13p homologs. This Nup84p complex in conjunction 
with Sec13-type proteins is required for correct 
nuclear pore biogenesis.
Length=702

 Score = 548 bits (1415),  Expect = 0.0, Method: Composition-based stats.
 Identities = 247/839 (29%), Positives = 368/839 (44%), Gaps = 154/839 (18%)

Query  116  LQRLQLEANTWQLLLNLISIDDPPSKASCKKAQETVFQKLHRYSSDREVWESFLSADHYA  175
            L+ L+LEANTW LL  L S     +     + +E     +H YSS++E+WE  L  D   
Sbjct  1    LENLELEANTWDLLERLYSDRLSSASE---EDEEMELLPVHPYSSEKELWEQLLQKDPLL  57

Query  176  LECVIIMKWLERTATTTPQDIDSLISELESQAERGQGHWTHGWLYTKETIKGQKRLRAWP  235
             E  +++ WLE  A          I               HGWL T  +IKG+KRLR WP
Sbjct  58   RELQLVIDWLEENAPEPEDPEGPDI--------------DHGWLNTLHSIKGKKRLRGWP  103

Query  236  QPLEPKDPGITASLLTSDVSEPLITQLDPDAVTRQKQHLQKQDQFYERATWMTCWKMLRQ  295
             P                 SEPL+TQLDPDA  RQ + L   D+  ERA W   +++LR 
Sbjct  104  GP----------------SSEPLVTQLDPDAPLRQGRPLDPLDEEDERALWKAIFELLRA  147

Query  296  GENWTKIRDWAEERLENWKAVSLCGS--SVDPESGGERTPVDDGMTRMMNFRSQESWRAA  353
            G    + R+  +ER ++W+A SL G     DP   GE     D +  +    S+  WR  
Sbjct  148  G-RLEEARELCKERGQSWRAASLEGWQLYHDPNIDGE----LDELEPVEGNPSRALWRRT  202

Query  354  CSALARNPHIEDFERAVYALLCGETEAAFKVCQSWDDYLYVHFNSVVLSRYQGFCKQFRR  413
            C AL++N +++D+ERA+Y  L G+  +   VC+SW+D+L+ + N+++  + +   ++   
Sbjct  203  CYALSQNGNLDDYERAIYGALSGDLPSVLPVCRSWEDHLWAYLNALLDIQVENELRELCP  262

Query  414  KLSHS-PTAPVN------FVPEPVGYSDFNKFVQYTKGNERIGVEARNPYRTIQAAILGK  466
            K     P    +       +P P+   +    +   K + R+  EA +P R IQ AI+  
Sbjct  263  KRYAPLPDEYFSSFELVLPLPSPLSTEEILNLLSSLK-SPRVRDEAEHPLRVIQGAIILD  321

Query  467  GYDTFFYSLAKAVSQVAKTGSEDSFVPDLSPTHVDDSLLIAAEDDDALRIATHLYIIASS  526
              D+   SL   +S VAK                +++     ED   LR   HL +    
Sbjct  322  DIDSLLESLGDWLSDVAK---------------GNETENDLLEDPYLLRFLAHLILFLRL  366

Query  527  IGYVRSDTQFFETASVNVI-GYIANLEDAGIYEAIPLYASLLPAPQTHSVLGRVLIEILD  585
            +GY  S  Q  E A  N+I  YI+ L  AG+YE IPLYAS LP  +   V  R L  I D
Sbjct  367  LGYDPS--QVDEEAKENIITAYISYLRLAGLYELIPLYASFLPEERAVEVYSRFLESITD  424

Query  586  PRERKQQVRLIEKYDINIEAVLEDQWNWISSTVSAVEHTRTVKRYPKVVRRDDGTRELVP  645
            P ER+ Q+ L  K  +++EA+L+     +     +      +                  
Sbjct  425  PEERRLQLELARKLGLDVEAILKRTVERVFRETESEYGPLDL------------------  466

Query  646  VKTDFIGTEISRSDERLIRSLEWLRYVDGQWGRICHLGAFLYRKFYLSGKLAAARELSRR  705
            +    I +E++  D +LIRSLEWL +V GQ+         LYR+F L+GKLAAAREL  R
Sbjct  467  ISEILIDSEVTEEDLKLIRSLEWLLFVPGQYEEALEQANALYRRFLLNGKLAAARELFER  526

Query  706  MKLSDISRESFGFDVAEFGYGIPNGSDRATPEPSSPTKSRLLGSAHKLNRPIPNGVPSDE  765
            +  SD+ +E              N S  + PE                            
Sbjct  527  LNPSDLIKEY---------DLELNSSTDSLPE----------------------------  549

Query  766  QTNILVMQSQTMRDLEELTLAFDGLERFGLCWKKIDKCVSIYVLNRNGLLTDVAFRSKRR  825
                L   ++     E L  A D  E     W K                  +    K +
Sbjct  550  ---ELENAAREYLCYEALLEALDSFEE----WFK------------------LFSLLKPK  584

Query  826  RDSGAVKDLRDELQDTLDEISMHVDAVLD-EWLTAPADEAEEAELEE-----IRVTYIPE  879
            +DS  +K  + +L++   +    +  VL   WL    ++AEE +  +     IR  YIPE
Sbjct  585  KDSENLKRWKQKLKELTKQAKELIYNVLLGGWLVDLTEDAEEDDERKHELEEIRQLYIPE  644

Query  880  LFLDYHNALYFSAHVLTSEILVQCMNLAMQVSENEY-LTRSFVSSRRMAELVDALALSS  937
            L L  H+ L+ +  +L SE L +C+ LA  V++ +  L   FV S R+ EL+  +A SS
Sbjct  645  LILALHSVLHSAGTIL-SENLKECLELANLVADEDSKLYEVFVKSGRLKELLQKVAESS  702



Lambda      K        H        a         alpha
   0.318    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1227564492


Query= TCONS_00001817

Length=1072
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461184 pfam04121, Nup84_Nup100, Nuclear pore protein 84 / 107...  551     0.0  


>CDD:461184 pfam04121, Nup84_Nup100, Nuclear pore protein 84 / 107.  Nup84p 
forms a complex with five proteins, of which Nup120p, Nup85p, 
Sec13p, and a Sec13p homologs. This Nup84p complex in conjunction 
with Sec13-type proteins is required for correct 
nuclear pore biogenesis.
Length=702

 Score = 551 bits (1421),  Expect = 0.0, Method: Composition-based stats.
 Identities = 247/839 (29%), Positives = 368/839 (44%), Gaps = 154/839 (18%)

Query  211   LQRLQLEANTWQLLLNLISIDDPPSKASCKKAQETVFQKLHRYSSDREVWESFLSADHYA  270
             L+ L+LEANTW LL  L S     +     + +E     +H YSS++E+WE  L  D   
Sbjct  1     LENLELEANTWDLLERLYSDRLSSASE---EDEEMELLPVHPYSSEKELWEQLLQKDPLL  57

Query  271   LECVIIMKWLERTATTTPQDIDSLISELESQAERGQGHWTHGWLYTKETIKGQKRLRAWP  330
              E  +++ WLE  A          I               HGWL T  +IKG+KRLR WP
Sbjct  58    RELQLVIDWLEENAPEPEDPEGPDI--------------DHGWLNTLHSIKGKKRLRGWP  103

Query  331   QPLEPKDPGITASLLTSDVSEPLITQLDPDAVTRQKQHLQKQDQFYERATWMTCWKMLRQ  390
              P                 SEPL+TQLDPDA  RQ + L   D+  ERA W   +++LR 
Sbjct  104   GP----------------SSEPLVTQLDPDAPLRQGRPLDPLDEEDERALWKAIFELLRA  147

Query  391   GENWTKIRDWAEERLENWKAVSLCGS--SVDPESGGERTPVDDGMTRMMNFRSQESWRAA  448
             G    + R+  +ER ++W+A SL G     DP   GE     D +  +    S+  WR  
Sbjct  148   G-RLEEARELCKERGQSWRAASLEGWQLYHDPNIDGE----LDELEPVEGNPSRALWRRT  202

Query  449   CSALARNPHIEDFERAVYALLCGETEAAFKVCQSWDDYLYVHFNSVVLSRYQGFCKQFRR  508
             C AL++N +++D+ERA+Y  L G+  +   VC+SW+D+L+ + N+++  + +   ++   
Sbjct  203   CYALSQNGNLDDYERAIYGALSGDLPSVLPVCRSWEDHLWAYLNALLDIQVENELRELCP  262

Query  509   KLSHS-PTAPVN------FVPEPVGYSDFNKFVQYTKGNERIGVEARNPYRTIQAAILGK  561
             K     P    +       +P P+   +    +   K + R+  EA +P R IQ AI+  
Sbjct  263   KRYAPLPDEYFSSFELVLPLPSPLSTEEILNLLSSLK-SPRVRDEAEHPLRVIQGAIILD  321

Query  562   GYDTFFYSLAKAVSQVAKTGSEDSFVPDLSPTHVDDSLLIAAEDDDALRIATHLYIIASS  621
               D+   SL   +S VAK                +++     ED   LR   HL +    
Sbjct  322   DIDSLLESLGDWLSDVAK---------------GNETENDLLEDPYLLRFLAHLILFLRL  366

Query  622   IGYVRSDTQFFETASVNVI-GYIANLEDAGIYEAIPLYASLLPAPQTHSVLGRVLIEILD  680
             +GY  S  Q  E A  N+I  YI+ L  AG+YE IPLYAS LP  +   V  R L  I D
Sbjct  367   LGYDPS--QVDEEAKENIITAYISYLRLAGLYELIPLYASFLPEERAVEVYSRFLESITD  424

Query  681   PRERKQQVRLIEKYDINIEAVLEDQWNWISSTVSAVEHTRTVKRYPKVVRRDDGTRELVP  740
             P ER+ Q+ L  K  +++EA+L+     +     +      +                  
Sbjct  425   PEERRLQLELARKLGLDVEAILKRTVERVFRETESEYGPLDL------------------  466

Query  741   VKTDFIGTEISRSDERLIRSLEWLRYVDGQWGRICHLGAFLYRKFYLSGKLAAARELSRR  800
             +    I +E++  D +LIRSLEWL +V GQ+         LYR+F L+GKLAAAREL  R
Sbjct  467   ISEILIDSEVTEEDLKLIRSLEWLLFVPGQYEEALEQANALYRRFLLNGKLAAARELFER  526

Query  801   MKLSDISRESFGFDVAEFGYGIPNGSDRATPEPSSPTKSRLLGSAHKLNRPIPNGVPSDE  860
             +  SD+ +E              N S  + PE                            
Sbjct  527   LNPSDLIKEY---------DLELNSSTDSLPE----------------------------  549

Query  861   QTNILVMQSQTMRDLEELTLAFDGLERFGLCWKKIDKCVSIYVLNRNGLLTDVAFRSKRR  920
                 L   ++     E L  A D  E     W K                  +    K +
Sbjct  550   ---ELENAAREYLCYEALLEALDSFEE----WFK------------------LFSLLKPK  584

Query  921   RDSGAVKDLRDELQDTLDEISMHVDAVLD-EWLTAPADEAEEAELEE-----IRVTYIPE  974
             +DS  +K  + +L++   +    +  VL   WL    ++AEE +  +     IR  YIPE
Sbjct  585   KDSENLKRWKQKLKELTKQAKELIYNVLLGGWLVDLTEDAEEDDERKHELEEIRQLYIPE  644

Query  975   LFLDYHNALYFSAHVLTSEILVQCMNLAMQVSENEY-LTRSFVSSRRMAELVDALALSS  1032
             L L  H+ L+ +  +L SE L +C+ LA  V++ +  L   FV S R+ EL+  +A SS
Sbjct  645   LILALHSVLHSAGTIL-SENLKECLELANLVADEDSKLYEVFVKSGRLKELLQKVAESS  702



Lambda      K        H        a         alpha
   0.316    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1381894976


Query= TCONS_00001818

Length=1072
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461184 pfam04121, Nup84_Nup100, Nuclear pore protein 84 / 107...  551     0.0  


>CDD:461184 pfam04121, Nup84_Nup100, Nuclear pore protein 84 / 107.  Nup84p 
forms a complex with five proteins, of which Nup120p, Nup85p, 
Sec13p, and a Sec13p homologs. This Nup84p complex in conjunction 
with Sec13-type proteins is required for correct 
nuclear pore biogenesis.
Length=702

 Score = 551 bits (1421),  Expect = 0.0, Method: Composition-based stats.
 Identities = 247/839 (29%), Positives = 368/839 (44%), Gaps = 154/839 (18%)

Query  211   LQRLQLEANTWQLLLNLISIDDPPSKASCKKAQETVFQKLHRYSSDREVWESFLSADHYA  270
             L+ L+LEANTW LL  L S     +     + +E     +H YSS++E+WE  L  D   
Sbjct  1     LENLELEANTWDLLERLYSDRLSSASE---EDEEMELLPVHPYSSEKELWEQLLQKDPLL  57

Query  271   LECVIIMKWLERTATTTPQDIDSLISELESQAERGQGHWTHGWLYTKETIKGQKRLRAWP  330
              E  +++ WLE  A          I               HGWL T  +IKG+KRLR WP
Sbjct  58    RELQLVIDWLEENAPEPEDPEGPDI--------------DHGWLNTLHSIKGKKRLRGWP  103

Query  331   QPLEPKDPGITASLLTSDVSEPLITQLDPDAVTRQKQHLQKQDQFYERATWMTCWKMLRQ  390
              P                 SEPL+TQLDPDA  RQ + L   D+  ERA W   +++LR 
Sbjct  104   GP----------------SSEPLVTQLDPDAPLRQGRPLDPLDEEDERALWKAIFELLRA  147

Query  391   GENWTKIRDWAEERLENWKAVSLCGS--SVDPESGGERTPVDDGMTRMMNFRSQESWRAA  448
             G    + R+  +ER ++W+A SL G     DP   GE     D +  +    S+  WR  
Sbjct  148   G-RLEEARELCKERGQSWRAASLEGWQLYHDPNIDGE----LDELEPVEGNPSRALWRRT  202

Query  449   CSALARNPHIEDFERAVYALLCGETEAAFKVCQSWDDYLYVHFNSVVLSRYQGFCKQFRR  508
             C AL++N +++D+ERA+Y  L G+  +   VC+SW+D+L+ + N+++  + +   ++   
Sbjct  203   CYALSQNGNLDDYERAIYGALSGDLPSVLPVCRSWEDHLWAYLNALLDIQVENELRELCP  262

Query  509   KLSHS-PTAPVN------FVPEPVGYSDFNKFVQYTKGNERIGVEARNPYRTIQAAILGK  561
             K     P    +       +P P+   +    +   K + R+  EA +P R IQ AI+  
Sbjct  263   KRYAPLPDEYFSSFELVLPLPSPLSTEEILNLLSSLK-SPRVRDEAEHPLRVIQGAIILD  321

Query  562   GYDTFFYSLAKAVSQVAKTGSEDSFVPDLSPTHVDDSLLIAAEDDDALRIATHLYIIASS  621
               D+   SL   +S VAK                +++     ED   LR   HL +    
Sbjct  322   DIDSLLESLGDWLSDVAK---------------GNETENDLLEDPYLLRFLAHLILFLRL  366

Query  622   IGYVRSDTQFFETASVNVI-GYIANLEDAGIYEAIPLYASLLPAPQTHSVLGRVLIEILD  680
             +GY  S  Q  E A  N+I  YI+ L  AG+YE IPLYAS LP  +   V  R L  I D
Sbjct  367   LGYDPS--QVDEEAKENIITAYISYLRLAGLYELIPLYASFLPEERAVEVYSRFLESITD  424

Query  681   PRERKQQVRLIEKYDINIEAVLEDQWNWISSTVSAVEHTRTVKRYPKVVRRDDGTRELVP  740
             P ER+ Q+ L  K  +++EA+L+     +     +      +                  
Sbjct  425   PEERRLQLELARKLGLDVEAILKRTVERVFRETESEYGPLDL------------------  466

Query  741   VKTDFIGTEISRSDERLIRSLEWLRYVDGQWGRICHLGAFLYRKFYLSGKLAAARELSRR  800
             +    I +E++  D +LIRSLEWL +V GQ+         LYR+F L+GKLAAAREL  R
Sbjct  467   ISEILIDSEVTEEDLKLIRSLEWLLFVPGQYEEALEQANALYRRFLLNGKLAAARELFER  526

Query  801   MKLSDISRESFGFDVAEFGYGIPNGSDRATPEPSSPTKSRLLGSAHKLNRPIPNGVPSDE  860
             +  SD+ +E              N S  + PE                            
Sbjct  527   LNPSDLIKEY---------DLELNSSTDSLPE----------------------------  549

Query  861   QTNILVMQSQTMRDLEELTLAFDGLERFGLCWKKIDKCVSIYVLNRNGLLTDVAFRSKRR  920
                 L   ++     E L  A D  E     W K                  +    K +
Sbjct  550   ---ELENAAREYLCYEALLEALDSFEE----WFK------------------LFSLLKPK  584

Query  921   RDSGAVKDLRDELQDTLDEISMHVDAVLD-EWLTAPADEAEEAELEE-----IRVTYIPE  974
             +DS  +K  + +L++   +    +  VL   WL    ++AEE +  +     IR  YIPE
Sbjct  585   KDSENLKRWKQKLKELTKQAKELIYNVLLGGWLVDLTEDAEEDDERKHELEEIRQLYIPE  644

Query  975   LFLDYHNALYFSAHVLTSEILVQCMNLAMQVSENEY-LTRSFVSSRRMAELVDALALSS  1032
             L L  H+ L+ +  +L SE L +C+ LA  V++ +  L   FV S R+ EL+  +A SS
Sbjct  645   LILALHSVLHSAGTIL-SENLKECLELANLVADEDSKLYEVFVKSGRLKELLQKVAESS  702



Lambda      K        H        a         alpha
   0.316    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1381894976


Query= TCONS_00007363

Length=704
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461184 pfam04121, Nup84_Nup100, Nuclear pore protein 84 / 107...  456     3e-152


>CDD:461184 pfam04121, Nup84_Nup100, Nuclear pore protein 84 / 107.  Nup84p 
forms a complex with five proteins, of which Nup120p, Nup85p, 
Sec13p, and a Sec13p homologs. This Nup84p complex in conjunction 
with Sec13-type proteins is required for correct 
nuclear pore biogenesis.
Length=702

 Score = 456 bits (1176),  Expect = 3e-152, Method: Composition-based stats.
 Identities = 181/587 (31%), Positives = 269/587 (46%), Gaps = 84/587 (14%)

Query  116  LQRLQLEANTWQLLLNLISIDDPPSKASCKKAQETVFQKLHRYSSDREVWESFLSADHYA  175
            L+ L+LEANTW LL  L S     +     + +E     +H YSS++E+WE  L  D   
Sbjct  1    LENLELEANTWDLLERLYSDRLSSASE---EDEEMELLPVHPYSSEKELWEQLLQKDPLL  57

Query  176  LECVIIMKWLERTATTTPQDIDSLISELESQAERGQGHWTHGWLYTKETIKGQKRLRAWP  235
             E  +++ WLE  A          I               HGWL T  +IKG+KRLR WP
Sbjct  58   RELQLVIDWLEENAPEPEDPEGPDI--------------DHGWLNTLHSIKGKKRLRGWP  103

Query  236  QPLEPKDPGITASLLTSDVSEPLITQLDPDAVTRQKQHLQKQDQFYERATWMTCWKMLRQ  295
             P                 SEPL+TQLDPDA  RQ + L   D+  ERA W   +++LR 
Sbjct  104  GP----------------SSEPLVTQLDPDAPLRQGRPLDPLDEEDERALWKAIFELLRA  147

Query  296  GENWTKIRDWAEERLENWKAVSLCGS--SVDPESGGERTPVDDGMTRMMNFRSQESWRAA  353
            G    + R+  +ER ++W+A SL G     DP   GE     D +  +    S+  WR  
Sbjct  148  G-RLEEARELCKERGQSWRAASLEGWQLYHDPNIDGE----LDELEPVEGNPSRALWRRT  202

Query  354  CSALARNPHIEDFERAVYALLCGETEAAFKVCQSWDDYLYVHFNSVVLSRYQGFCKQFRR  413
            C AL++N +++D+ERA+Y  L G+  +   VC+SW+D+L+ + N+++  + +   ++   
Sbjct  203  CYALSQNGNLDDYERAIYGALSGDLPSVLPVCRSWEDHLWAYLNALLDIQVENELRELCP  262

Query  414  KLSHS-PTAPVN------FVPEPVGYSDFNKFVQYTKGNERIGVEARNPYRTIQAAILGK  466
            K     P    +       +P P+   +    +   K + R+  EA +P R IQ AI+  
Sbjct  263  KRYAPLPDEYFSSFELVLPLPSPLSTEEILNLLSSLK-SPRVRDEAEHPLRVIQGAIILD  321

Query  467  GYDTFFYSLAKAVSQVAKTGSEDSFVPDLSPTHVDDSLLIAAEDDDALRIATHLYIIASS  526
              D+   SL   +S VAK                +++     ED   LR   HL +    
Sbjct  322  DIDSLLESLGDWLSDVAK---------------GNETENDLLEDPYLLRFLAHLILFLRL  366

Query  527  IGYVRSDTQFFETASVNVI-GYIANLEDAGIYEAIPLYASLLPAPQTHSVLGRVLIEILD  585
            +GY  S  Q  E A  N+I  YI+ L  AG+YE IPLYAS LP  +   V  R L  I D
Sbjct  367  LGYDPS--QVDEEAKENIITAYISYLRLAGLYELIPLYASFLPEERAVEVYSRFLESITD  424

Query  586  PRERKQQVRLIEKYDINIEAVLEDQWNWISSTVSAVEHTRTVKRYPKVVRRDDGTRELVP  645
            P ER+ Q+ L  K  +++EA+L+     +     +      +                  
Sbjct  425  PEERRLQLELARKLGLDVEAILKRTVERVFRETESEYGPLDL------------------  466

Query  646  VKTDFIGTEISRSDERLIRSLEWLRYVDGQWGRICHLGAFLYRKFYC  692
            +    I +E++  D +LIRSLEWL +V GQ+         LYR+F  
Sbjct  467  ISEILIDSEVTEEDLKLIRSLEWLLFVPGQYEEALEQANALYRRFLL  513



Lambda      K        H        a         alpha
   0.319    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 901096690


Query= TCONS_00001819

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00001820

Length=1050
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      116     2e-30
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  104     3e-27
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  62.2    2e-11


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 116 bits (294),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 91/208 (44%), Gaps = 33/208 (16%)

Query  378  RQVKVIRSGKTVEISIHDVLVGDVMHLEPGDLVPVDGVFITGHNVKCDESSATGESDVLR  437
                V+R G   E+   +++ GD++ L+PG+ VP DG  + G     DES  TGES  + 
Sbjct  5    PTATVLRDGTEEEVPADELVPGDIVLLKPGERVPADGRIVEGSAS-VDESLLTGESLPVE  63

Query  438  KTPGSDVYQAIERHENLKKLDPFIVSGAKVSEGVGTFLVTAVGVNSTYGKTLMSLQD-EG  496
            K  G  VY                 SG  V  G    +VTA G ++  G+    +++ + 
Sbjct  64   KKKGDMVY-----------------SGTVVVSGSAKAVVTATGEDTELGRIARLVEEAKS  106

Query  497  QTTPLQSKLNVLAEYIAKLGLAAGLLLFIVLFIKFLAQLKDMYGADAKGQAFLQIFIVAV  556
            + TPLQ  L+ L +Y + + L   L +F++        L+ +  A     A L       
Sbjct  107  KKTPLQRLLDRLGKYFSPVVLLIALAVFLLWLFVGGPPLRALLRA----LAVL-------  155

Query  557  TIIVVAVPEGLPLAVTLALAFATTRMLK  584
               V A P  LPLA  LALA    R+ K
Sbjct  156  ---VAACPCALPLATPLALAVGARRLAK  180


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 104 bits (261),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 38/93 (41%), Positives = 52/93 (56%), Gaps = 4/93 (4%)

Query  676  IVINSTAF-EGEQDGTMTFIGSKTETALLSFARTYLGMGSISEARSNAEIAQMVPFDSGR  734
             + NS AF E E+ G    +G  TE+ALL FA        + E R +      +PF+S R
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEKM--GIDVEELRKDYPRVAEIPFNSDR  58

Query  735  KCMAVVIRLE-NGKYRMLVKGASEILLSKSTRI  766
            K M+ V +L  +GKYR+ VKGA EI+L + T I
Sbjct  59   KRMSTVHKLPDDGKYRLFVKGAPEIILDRCTTI  91


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 62.2 bits (151),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 30/121 (25%), Positives = 51/121 (42%), Gaps = 18/121 (15%)

Query  838  LFGIFGIQDP--LRPGVTESVRQCQKAGVFVRMVTGDNIMTAKAIAQECGIFTPGGIAIE  895
            L G+  + D   L PG  E+++  ++ G+ V ++TGDN   A+A+ +  G+     + I 
Sbjct  87   LLGVIALADELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFDVVIS  146

Query  896  GPKFRQLSNRQMRQIIPRLQVLARSSPDDKKILVTQLRKLGETVAVTGDGTNDAQALKTA  955
            G                    + +  P+     + +L    E V + GDG ND  A K A
Sbjct  147  G----------------DDVGVGKPKPEIYLAALERLGVKPEEVLMVGDGVNDIPAAKAA  190

Query  956  D  956
             
Sbjct  191  G  191



Lambda      K        H        a         alpha
   0.313    0.129    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1350745704


Query= TCONS_00007364

Length=1050
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      116     2e-30
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  104     3e-27
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  62.2    2e-11


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 116 bits (294),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 91/208 (44%), Gaps = 33/208 (16%)

Query  378  RQVKVIRSGKTVEISIHDVLVGDVMHLEPGDLVPVDGVFITGHNVKCDESSATGESDVLR  437
                V+R G   E+   +++ GD++ L+PG+ VP DG  + G     DES  TGES  + 
Sbjct  5    PTATVLRDGTEEEVPADELVPGDIVLLKPGERVPADGRIVEGSAS-VDESLLTGESLPVE  63

Query  438  KTPGSDVYQAIERHENLKKLDPFIVSGAKVSEGVGTFLVTAVGVNSTYGKTLMSLQD-EG  496
            K  G  VY                 SG  V  G    +VTA G ++  G+    +++ + 
Sbjct  64   KKKGDMVY-----------------SGTVVVSGSAKAVVTATGEDTELGRIARLVEEAKS  106

Query  497  QTTPLQSKLNVLAEYIAKLGLAAGLLLFIVLFIKFLAQLKDMYGADAKGQAFLQIFIVAV  556
            + TPLQ  L+ L +Y + + L   L +F++        L+ +  A     A L       
Sbjct  107  KKTPLQRLLDRLGKYFSPVVLLIALAVFLLWLFVGGPPLRALLRA----LAVL-------  155

Query  557  TIIVVAVPEGLPLAVTLALAFATTRMLK  584
               V A P  LPLA  LALA    R+ K
Sbjct  156  ---VAACPCALPLATPLALAVGARRLAK  180


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 104 bits (261),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 38/93 (41%), Positives = 52/93 (56%), Gaps = 4/93 (4%)

Query  676  IVINSTAF-EGEQDGTMTFIGSKTETALLSFARTYLGMGSISEARSNAEIAQMVPFDSGR  734
             + NS AF E E+ G    +G  TE+ALL FA        + E R +      +PF+S R
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEKM--GIDVEELRKDYPRVAEIPFNSDR  58

Query  735  KCMAVVIRLE-NGKYRMLVKGASEILLSKSTRI  766
            K M+ V +L  +GKYR+ VKGA EI+L + T I
Sbjct  59   KRMSTVHKLPDDGKYRLFVKGAPEIILDRCTTI  91


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 62.2 bits (151),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 30/121 (25%), Positives = 51/121 (42%), Gaps = 18/121 (15%)

Query  838  LFGIFGIQDP--LRPGVTESVRQCQKAGVFVRMVTGDNIMTAKAIAQECGIFTPGGIAIE  895
            L G+  + D   L PG  E+++  ++ G+ V ++TGDN   A+A+ +  G+     + I 
Sbjct  87   LLGVIALADELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFDVVIS  146

Query  896  GPKFRQLSNRQMRQIIPRLQVLARSSPDDKKILVTQLRKLGETVAVTGDGTNDAQALKTA  955
            G                    + +  P+     + +L    E V + GDG ND  A K A
Sbjct  147  G----------------DDVGVGKPKPEIYLAALERLGVKPEEVLMVGDGVNDIPAAKAA  190

Query  956  D  956
             
Sbjct  191  G  191



Lambda      K        H        a         alpha
   0.313    0.129    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 1350745704


Query= TCONS_00001822

Length=1132
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  118     4e-31
CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      116     4e-30
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  104     4e-27
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  61.8    4e-11


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 118 bits (298),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 35/102 (34%), Positives = 54/102 (53%), Gaps = 3/102 (3%)

Query  1028  ESVLTAVQLLWVNLIMDTFAALALATDPPTPHILDRRPEPRSAPLINLTMWKMIIGQSIF  1087
                LT +Q+LW+NL+ D   ALAL  +PP P ++ R P     PL +  M + I+ Q + 
Sbjct  1     PLPLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLL  60

Query  1088  QLVVTLVLNFAGKSIFKLSSEDDMERLKTTVFNTFVWMQIFN  1129
               ++TL++ F G   F      + +  +T  FNT V  Q+FN
Sbjct  61    IAILTLLVFFLGLLGF---GISESQNAQTMAFNTLVLSQLFN  99


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 116 bits (292),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 91/208 (44%), Gaps = 33/208 (16%)

Query  378  RQVKVIRSGKTVEISIHDVLVGDVMHLEPGDLVPVDGVFITGHNVKCDESSATGESDVLR  437
                V+R G   E+   +++ GD++ L+PG+ VP DG  + G     DES  TGES  + 
Sbjct  5    PTATVLRDGTEEEVPADELVPGDIVLLKPGERVPADGRIVEGSAS-VDESLLTGESLPVE  63

Query  438  KTPGSDVYQAIERHENLKKLDPFIVSGAKVSEGVGTFLVTAVGVNSTYGKTLMSLQD-EG  496
            K  G  VY                 SG  V  G    +VTA G ++  G+    +++ + 
Sbjct  64   KKKGDMVY-----------------SGTVVVSGSAKAVVTATGEDTELGRIARLVEEAKS  106

Query  497  QTTPLQSKLNVLAEYIAKLGLAAGLLLFIVLFIKFLAQLKDMYGADAKGQAFLQIFIVAV  556
            + TPLQ  L+ L +Y + + L   L +F++        L+ +  A     A L       
Sbjct  107  KKTPLQRLLDRLGKYFSPVVLLIALAVFLLWLFVGGPPLRALLRA----LAVL-------  155

Query  557  TIIVVAVPEGLPLAVTLALAFATTRMLK  584
               V A P  LPLA  LALA    R+ K
Sbjct  156  ---VAACPCALPLATPLALAVGARRLAK  180


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 104 bits (261),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 38/93 (41%), Positives = 52/93 (56%), Gaps = 4/93 (4%)

Query  676  IVINSTAF-EGEQDGTMTFIGSKTETALLSFARTYLGMGSISEARSNAEIAQMVPFDSGR  734
             + NS AF E E+ G    +G  TE+ALL FA        + E R +      +PF+S R
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEKM--GIDVEELRKDYPRVAEIPFNSDR  58

Query  735  KCMAVVIRLE-NGKYRMLVKGASEILLSKSTRI  766
            K M+ V +L  +GKYR+ VKGA EI+L + T I
Sbjct  59   KRMSTVHKLPDDGKYRLFVKGAPEIILDRCTTI  91


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 61.8 bits (150),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 30/121 (25%), Positives = 51/121 (42%), Gaps = 18/121 (15%)

Query  838  LFGIFGIQDP--LRPGVTESVRQCQKAGVFVRMVTGDNIMTAKAIAQECGIFTPGGIAIE  895
            L G+  + D   L PG  E+++  ++ G+ V ++TGDN   A+A+ +  G+     + I 
Sbjct  87   LLGVIALADELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFDVVIS  146

Query  896  GPKFRQLSNRQMRQIIPRLQVLARSSPDDKKILVTQLRKLGETVAVTGDGTNDAQALKTA  955
            G                    + +  P+     + +L    E V + GDG ND  A K A
Sbjct  147  G----------------DDVGVGKPKPEIYLAALERLGVKPEEVLMVGDGVNDIPAAKAA  190

Query  956  D  956
             
Sbjct  191  G  191



Lambda      K        H        a         alpha
   0.315    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1445106330


Query= TCONS_00001823

Length=1056
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      115     5e-30
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  104     3e-27
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  61.4    3e-11


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 115 bits (291),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 91/208 (44%), Gaps = 33/208 (16%)

Query  378  RQVKVIRSGKTVEISIHDVLVGDVMHLEPGDLVPVDGVFITGHNVKCDESSATGESDVLR  437
                V+R G   E+   +++ GD++ L+PG+ VP DG  + G     DES  TGES  + 
Sbjct  5    PTATVLRDGTEEEVPADELVPGDIVLLKPGERVPADGRIVEGSAS-VDESLLTGESLPVE  63

Query  438  KTPGSDVYQAIERHENLKKLDPFIVSGAKVSEGVGTFLVTAVGVNSTYGKTLMSLQD-EG  496
            K  G  VY                 SG  V  G    +VTA G ++  G+    +++ + 
Sbjct  64   KKKGDMVY-----------------SGTVVVSGSAKAVVTATGEDTELGRIARLVEEAKS  106

Query  497  QTTPLQSKLNVLAEYIAKLGLAAGLLLFIVLFIKFLAQLKDMYGADAKGQAFLQIFIVAV  556
            + TPLQ  L+ L +Y + + L   L +F++        L+ +  A     A L       
Sbjct  107  KKTPLQRLLDRLGKYFSPVVLLIALAVFLLWLFVGGPPLRALLRA----LAVL-------  155

Query  557  TIIVVAVPEGLPLAVTLALAFATTRMLK  584
               V A P  LPLA  LALA    R+ K
Sbjct  156  ---VAACPCALPLATPLALAVGARRLAK  180


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 104 bits (261),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 38/93 (41%), Positives = 52/93 (56%), Gaps = 4/93 (4%)

Query  676  IVINSTAF-EGEQDGTMTFIGSKTETALLSFARTYLGMGSISEARSNAEIAQMVPFDSGR  734
             + NS AF E E+ G    +G  TE+ALL FA        + E R +      +PF+S R
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEKM--GIDVEELRKDYPRVAEIPFNSDR  58

Query  735  KCMAVVIRLE-NGKYRMLVKGASEILLSKSTRI  766
            K M+ V +L  +GKYR+ VKGA EI+L + T I
Sbjct  59   KRMSTVHKLPDDGKYRLFVKGAPEIILDRCTTI  91


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 61.4 bits (149),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 30/121 (25%), Positives = 51/121 (42%), Gaps = 18/121 (15%)

Query  838  LFGIFGIQDP--LRPGVTESVRQCQKAGVFVRMVTGDNIMTAKAIAQECGIFTPGGIAIE  895
            L G+  + D   L PG  E+++  ++ G+ V ++TGDN   A+A+ +  G+     + I 
Sbjct  87   LLGVIALADELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFDVVIS  146

Query  896  GPKFRQLSNRQMRQIIPRLQVLARSSPDDKKILVTQLRKLGETVAVTGDGTNDAQALKTA  955
            G                    + +  P+     + +L    E V + GDG ND  A K A
Sbjct  147  G----------------DDVGVGKPKPEIYLAALERLGVKPEEVLMVGDGVNDIPAAKAA  190

Query  956  D  956
             
Sbjct  191  G  191



Lambda      K        H        a         alpha
   0.314    0.130    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1359240960


Query= TCONS_00001821

Length=1432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  175     7e-51
CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      116     3e-30
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  104     5e-27
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  61.8    4e-11


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 175 bits (446),  Expect = 7e-51, Method: Composition-based stats.
 Identities = 57/179 (32%), Positives = 92/179 (51%), Gaps = 6/179 (3%)

Query  1028  ESVLTAVQLLWVNLIMDTFAALALATDPPTPHILDRRPEPRSAPLINLTMWKMIIGQSIF  1087
                LT +Q+LW+NL+ D   ALAL  +PP P ++ R P     PL +  M + I+ Q + 
Sbjct  1     PLPLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLL  60

Query  1088  QLVVTLVLNFAGKSIFKLSSEDDMERLKTTVFNTFVWMQIFNQWNSRRIDNSLNIFEGIF  1147
               ++TL++ F G   F      + +  +T  FNT V  Q+FN  N+R +  SL    G+F
Sbjct  61    IAILTLLVFFLGLLGF---GISESQNAQTMAFNTLVLSQLFNALNARSLRRSLF-KIGLF  116

Query  1148  RNRWFIGIQFIIVGGQVLIIFV--GGQAFSIKPLVGYQWGVSLILGVISLPVGVIIRLI  1204
              N+  +    + +  Q+LII+V      F   PL   QW + L+L ++ L V  + +L+
Sbjct  117   SNKLLLLAILLSLLLQLLIIYVPPLQAVFGTTPLSLEQWLIVLLLALVVLLVVELRKLL  175


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 116 bits (293),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 91/208 (44%), Gaps = 33/208 (16%)

Query  378  RQVKVIRSGKTVEISIHDVLVGDVMHLEPGDLVPVDGVFITGHNVKCDESSATGESDVLR  437
                V+R G   E+   +++ GD++ L+PG+ VP DG  + G     DES  TGES  + 
Sbjct  5    PTATVLRDGTEEEVPADELVPGDIVLLKPGERVPADGRIVEGSAS-VDESLLTGESLPVE  63

Query  438  KTPGSDVYQAIERHENLKKLDPFIVSGAKVSEGVGTFLVTAVGVNSTYGKTLMSLQD-EG  496
            K  G  VY                 SG  V  G    +VTA G ++  G+    +++ + 
Sbjct  64   KKKGDMVY-----------------SGTVVVSGSAKAVVTATGEDTELGRIARLVEEAKS  106

Query  497  QTTPLQSKLNVLAEYIAKLGLAAGLLLFIVLFIKFLAQLKDMYGADAKGQAFLQIFIVAV  556
            + TPLQ  L+ L +Y + + L   L +F++        L+ +  A     A L       
Sbjct  107  KKTPLQRLLDRLGKYFSPVVLLIALAVFLLWLFVGGPPLRALLRA----LAVL-------  155

Query  557  TIIVVAVPEGLPLAVTLALAFATTRMLK  584
               V A P  LPLA  LALA    R+ K
Sbjct  156  ---VAACPCALPLATPLALAVGARRLAK  180


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 104 bits (261),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 38/93 (41%), Positives = 52/93 (56%), Gaps = 4/93 (4%)

Query  676  IVINSTAF-EGEQDGTMTFIGSKTETALLSFARTYLGMGSISEARSNAEIAQMVPFDSGR  734
             + NS AF E E+ G    +G  TE+ALL FA        + E R +      +PF+S R
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEKM--GIDVEELRKDYPRVAEIPFNSDR  58

Query  735  KCMAVVIRLE-NGKYRMLVKGASEILLSKSTRI  766
            K M+ V +L  +GKYR+ VKGA EI+L + T I
Sbjct  59   KRMSTVHKLPDDGKYRLFVKGAPEIILDRCTTI  91


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 61.8 bits (150),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 30/121 (25%), Positives = 51/121 (42%), Gaps = 18/121 (15%)

Query  838  LFGIFGIQDP--LRPGVTESVRQCQKAGVFVRMVTGDNIMTAKAIAQECGIFTPGGIAIE  895
            L G+  + D   L PG  E+++  ++ G+ V ++TGDN   A+A+ +  G+     + I 
Sbjct  87   LLGVIALADELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFDVVIS  146

Query  896  GPKFRQLSNRQMRQIIPRLQVLARSSPDDKKILVTQLRKLGETVAVTGDGTNDAQALKTA  955
            G                    + +  P+     + +L    E V + GDG ND  A K A
Sbjct  147  G----------------DDVGVGKPKPEIYLAALERLGVKPEEVLMVGDGVNDIPAAKAA  190

Query  956  D  956
             
Sbjct  191  G  191



Lambda      K        H        a         alpha
   0.315    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1836384400


Query= TCONS_00001824

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  76.9    1e-17


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 76.9 bits (190),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 29/91 (32%), Positives = 46/91 (51%), Gaps = 3/91 (3%)

Query  6    TTVFNTFVWMQIFNQWKSRRIDNSLNIFEGIFRNRWFIGIQFIIVGGQVLIIFV--GGQA  63
            T  FNT V  Q+FN   +R +  SL    G+F N+  +    + +  Q+LII+V      
Sbjct  86   TMAFNTLVLSQLFNALNARSLRRSLF-KIGLFSNKLLLLAILLSLLLQLLIIYVPPLQAV  144

Query  64   FSIKPLVGYQWGVSLILGVISLPVGVIIRLI  94
            F   PL   QW + L+L ++ L V  + +L+
Sbjct  145  FGTTPLSLEQWLIVLLLALVVLLVVELRKLL  175



Lambda      K        H        a         alpha
   0.318    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00001826

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  63.9    2e-11


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 63.9 bits (156),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 85/462 (18%), Positives = 159/462 (34%), Gaps = 58/462 (13%)

Query  56   PDDRQKPTTSDLFHMLLIWFSMGMAVNHMVVGSIGTLVMNLNFTDAALCAVFGNLIGGLA  115
            P++ +  +T +LF     W      +N  V+G++G + + LN+  + L  + GNLIG + 
Sbjct  3    PEEERTWSTRNLFSF---WLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIF  58

Query  116  VGYMSTWGPRSGNRTLVMTRYFMGYYPNKVCCSLNVLTNLGYGMINAMVGGQILSKL--S  173
            V  +   G + G    +++R   G   + +   L  +   G+  I A +G + L  +   
Sbjct  59   VALLGRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGK  118

Query  174  GGTVSVIVGIIIVALGSAIMATFGMRVFHIYERFAWLPQLLTFCILAGSAIPQFD-----  228
                 + +G I     + ++  F   + H+Y  +  +  +  F ++A   IP        
Sbjct  119  IFGHWLWIGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAPLIPVAAFGFLI  178

Query  229  -LHAKSVGSSDEINAKRLGFFSL-------CMSSALSWAPSAADYYVYYPSTIRPWKVWS  280
                K+ G          G   L       C +   +   +A D+  Y P+     K+  
Sbjct  179  WAAVKAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQL  238

Query  281  VTTIGGCGAMIMSILLGVGLGTGVASNIRWQALYDGTPGSLLMAGYDRLGAFGKICGFIN  340
            V   GG     +  L+G+       +            G+      D L  F    G   
Sbjct  239  VAVPGG---FTLFALIGILGAAAAYA----------AYGAPAWDPLDILARFDPTAGVFL  285

Query  341  VLTVVSNNGPGTYSLAMNFQMLGDIWSRVPRPI-----FTIASTVTYTACAIGGRDFLYQ  395
               +V+    GT   A  +    D+ + +P+ I       IA+ +    C          
Sbjct  286  PAILVALAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNSAF  345

Query  396  IFKNFLPLIG-------------YWIIIWFTIAVEEDVLFNRCRGYDWSIWNDWRKLPVG  442
            +F  FL L+              Y+++    + V       R   Y +    +WR     
Sbjct  346  MFTTFLSLLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVNWR-----  400

Query  443  VAAGVSFLIGWAGAIVGMDQVYYTGPVANATTGGCDLGIWLG  484
              A  ++++G A  + G            A  G   L   +G
Sbjct  401  --AFAAYIVGIAAGLPGFSGSVGIKVPPGAMLGFD-LSYLVG  439



Lambda      K        H        a         alpha
   0.325    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00001827

Length=431


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00001828

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00001829

Length=436


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00001831

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00001830

Length=1425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  175     2e-50
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            131     1e-34


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 175 bits (447),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 121/296 (41%), Gaps = 81/296 (27%)

Query  1095  WQQGQYIGGGTFGSVYAAINLDSNYLMAVKEIRLQDPQLIPKIAQQIRDEMGVLEVLDHP  1154
             ++  + +G G+FG+VY A + D+  ++A+K+I+ +      K  + I  E+ +L+ L+HP
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKI--KKKKDKNILREIKILKKLNHP  58

Query  1155  NIVSYHGIEVHRDKVYIFMEYCSGGSLASLLEHGRVEDETVIMVYALQLLEGLAYLHQAG  1214
             NIV  +     +D +Y+ +EY  GGSL  LL       E        Q+LEGL       
Sbjct  59    NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE------  112

Query  1215  IVHRDIKPENILLDHNGIIKYVDFGAAKIIARQGKTVVPMDAFTGPNHKDAALVPKDSQM  1274
                                                                         
Sbjct        ------------------------------------------------------------  

Query  1275  AHQRGKNQKTMTGTPMYMSPEVIRG-DTSRLIHRQGAVDIWSLGCVILEMATGRRPWSTL  1333
                 G +  T  GTP YM+PEV+ G            VD+WSLGC++ E+ TG+ P+  +
Sbjct  113   ---SGSSLTTFVGTPWYMAPEVLGGNPYGP------KVDVWSLGCILYELLTGKPPFPGI  163

Query  1334  DNEWAIMYNIAQGN-QPQLPSTDQLSELGIDFLRRCFECDPMKRPTAAELLQHEWI  1388
             +        I Q    P+LPS   LSE   D L++  + DP KR TA + LQH W 
Sbjct  164   NGNEIYELIIDQPYAFPELPSN--LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 131 bits (333),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 77/303 (25%), Positives = 132/303 (44%), Gaps = 60/303 (20%)

Query  1096  QQGQYIGGGTFGSVYAAI----NLDSNYLMAVKEIRLQDPQLIPKIAQQIRDEMGVLEVL  1151
               G+ +G G FG VY         ++   +AVK ++        +  +   +E  +++ L
Sbjct  2     TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK---EGADEEEREDFLEEASIMKKL  58

Query  1152  DHPNIVSYHGIEVHRDKVYIFMEYCSGGSLAS-LLEHGRVEDETVIMVYALQLLEGLAYL  1210
             DHPNIV   G+    + +YI  EY  GG L   L +H R      ++  ALQ+ +G+ YL
Sbjct  59    DHPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYL  118

Query  1211  HQAGIVHRDIKPENILLDHNGIIKYVDFGAAKIIARQGKTVVPMDAFTGPNHKDAALVPK  1270
                  VHRD+   N L+  N ++K  DFG    ++R                     +  
Sbjct  119   ESKNFVHRDLAARNCLVSENLVVKISDFG----LSR--------------------DIYD  154

Query  1271  DSQMAHQRGKNQKTMTGTPM---YMSPEVIRGD--TSRLIHRQGAVDIWSLGCVILEMAT  1325
             D           +   G  +   +M+PE ++    TS         D+WS G ++ E+ T
Sbjct  155   DDYY--------RKRGGGKLPIKWMAPESLKDGKFTS-------KSDVWSFGVLLWEIFT  199

Query  1326  -GRRPWSTLDNEWAIMYNIAQGNQPQLP--STDQLSELGIDFLRRCFECDPMKRPTAAEL  1382
              G +P+  + NE  ++  +  G +   P    D+L +L    +++C+  DP  RPT +EL
Sbjct  200   LGEQPYPGMSNE-EVLEFLEDGYRLPQPENCPDELYDL----MKQCWAYDPEDRPTFSEL  254

Query  1383  LQH  1385
             ++ 
Sbjct  255   VED  257



Lambda      K        H        a         alpha
   0.317    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1826748200


Query= TCONS_00001832

Length=1407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  175     2e-50
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            131     1e-34


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 175 bits (447),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 121/296 (41%), Gaps = 81/296 (27%)

Query  1077  WQQGQYIGGGTFGSVYAAINLDSNYLMAVKEIRLQDPQLIPKIAQQIRDEMGVLEVLDHP  1136
             ++  + +G G+FG+VY A + D+  ++A+K+I+ +      K  + I  E+ +L+ L+HP
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKI--KKKKDKNILREIKILKKLNHP  58

Query  1137  NIVSYHGIEVHRDKVYIFMEYCSGGSLASLLEHGRVEDETVIMVYALQLLEGLAYLHQAG  1196
             NIV  +     +D +Y+ +EY  GGSL  LL       E        Q+LEGL       
Sbjct  59    NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE------  112

Query  1197  IVHRDIKPENILLDHNGIIKYVDFGAAKIIARQGKTVVPMDAFTGPNHKDAALVPKDSQM  1256
                                                                         
Sbjct        ------------------------------------------------------------  

Query  1257  AHQRGKNQKTMTGTPMYMSPEVIRG-DTSRLIHRQGAVDIWSLGCVILEMATGRRPWSTL  1315
                 G +  T  GTP YM+PEV+ G            VD+WSLGC++ E+ TG+ P+  +
Sbjct  113   ---SGSSLTTFVGTPWYMAPEVLGGNPYGP------KVDVWSLGCILYELLTGKPPFPGI  163

Query  1316  DNEWAIMYNIAQGN-QPQLPSTDQLSELGIDFLRRCFECDPMKRPTAAELLQHEWI  1370
             +        I Q    P+LPS   LSE   D L++  + DP KR TA + LQH W 
Sbjct  164   NGNEIYELIIDQPYAFPELPSN--LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 131 bits (333),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 77/303 (25%), Positives = 132/303 (44%), Gaps = 60/303 (20%)

Query  1078  QQGQYIGGGTFGSVYAAI----NLDSNYLMAVKEIRLQDPQLIPKIAQQIRDEMGVLEVL  1133
               G+ +G G FG VY         ++   +AVK ++        +  +   +E  +++ L
Sbjct  2     TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK---EGADEEEREDFLEEASIMKKL  58

Query  1134  DHPNIVSYHGIEVHRDKVYIFMEYCSGGSLAS-LLEHGRVEDETVIMVYALQLLEGLAYL  1192
             DHPNIV   G+    + +YI  EY  GG L   L +H R      ++  ALQ+ +G+ YL
Sbjct  59    DHPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYL  118

Query  1193  HQAGIVHRDIKPENILLDHNGIIKYVDFGAAKIIARQGKTVVPMDAFTGPNHKDAALVPK  1252
                  VHRD+   N L+  N ++K  DFG    ++R                     +  
Sbjct  119   ESKNFVHRDLAARNCLVSENLVVKISDFG----LSR--------------------DIYD  154

Query  1253  DSQMAHQRGKNQKTMTGTPM---YMSPEVIRGD--TSRLIHRQGAVDIWSLGCVILEMAT  1307
             D           +   G  +   +M+PE ++    TS         D+WS G ++ E+ T
Sbjct  155   DDYY--------RKRGGGKLPIKWMAPESLKDGKFTS-------KSDVWSFGVLLWEIFT  199

Query  1308  -GRRPWSTLDNEWAIMYNIAQGNQPQLP--STDQLSELGIDFLRRCFECDPMKRPTAAEL  1364
              G +P+  + NE  ++  +  G +   P    D+L +L    +++C+  DP  RPT +EL
Sbjct  200   LGEQPYPGMSNE-EVLEFLEDGYRLPQPENCPDELYDL----MKQCWAYDPEDRPTFSEL  254

Query  1365  LQH  1367
             ++ 
Sbjct  255   VED  257



Lambda      K        H        a         alpha
   0.317    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1801969400


Query= TCONS_00001833

Length=1425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  175     2e-50
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            131     1e-34


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 175 bits (447),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 121/296 (41%), Gaps = 81/296 (27%)

Query  1095  WQQGQYIGGGTFGSVYAAINLDSNYLMAVKEIRLQDPQLIPKIAQQIRDEMGVLEVLDHP  1154
             ++  + +G G+FG+VY A + D+  ++A+K+I+ +      K  + I  E+ +L+ L+HP
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKI--KKKKDKNILREIKILKKLNHP  58

Query  1155  NIVSYHGIEVHRDKVYIFMEYCSGGSLASLLEHGRVEDETVIMVYALQLLEGLAYLHQAG  1214
             NIV  +     +D +Y+ +EY  GGSL  LL       E        Q+LEGL       
Sbjct  59    NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE------  112

Query  1215  IVHRDIKPENILLDHNGIIKYVDFGAAKIIARQGKTVVPMDAFTGPNHKDAALVPKDSQM  1274
                                                                         
Sbjct        ------------------------------------------------------------  

Query  1275  AHQRGKNQKTMTGTPMYMSPEVIRG-DTSRLIHRQGAVDIWSLGCVILEMATGRRPWSTL  1333
                 G +  T  GTP YM+PEV+ G            VD+WSLGC++ E+ TG+ P+  +
Sbjct  113   ---SGSSLTTFVGTPWYMAPEVLGGNPYGP------KVDVWSLGCILYELLTGKPPFPGI  163

Query  1334  DNEWAIMYNIAQGN-QPQLPSTDQLSELGIDFLRRCFECDPMKRPTAAELLQHEWI  1388
             +        I Q    P+LPS   LSE   D L++  + DP KR TA + LQH W 
Sbjct  164   NGNEIYELIIDQPYAFPELPSN--LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 131 bits (333),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 77/303 (25%), Positives = 132/303 (44%), Gaps = 60/303 (20%)

Query  1096  QQGQYIGGGTFGSVYAAI----NLDSNYLMAVKEIRLQDPQLIPKIAQQIRDEMGVLEVL  1151
               G+ +G G FG VY         ++   +AVK ++        +  +   +E  +++ L
Sbjct  2     TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK---EGADEEEREDFLEEASIMKKL  58

Query  1152  DHPNIVSYHGIEVHRDKVYIFMEYCSGGSLAS-LLEHGRVEDETVIMVYALQLLEGLAYL  1210
             DHPNIV   G+    + +YI  EY  GG L   L +H R      ++  ALQ+ +G+ YL
Sbjct  59    DHPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYL  118

Query  1211  HQAGIVHRDIKPENILLDHNGIIKYVDFGAAKIIARQGKTVVPMDAFTGPNHKDAALVPK  1270
                  VHRD+   N L+  N ++K  DFG    ++R                     +  
Sbjct  119   ESKNFVHRDLAARNCLVSENLVVKISDFG----LSR--------------------DIYD  154

Query  1271  DSQMAHQRGKNQKTMTGTPM---YMSPEVIRGD--TSRLIHRQGAVDIWSLGCVILEMAT  1325
             D           +   G  +   +M+PE ++    TS         D+WS G ++ E+ T
Sbjct  155   DDYY--------RKRGGGKLPIKWMAPESLKDGKFTS-------KSDVWSFGVLLWEIFT  199

Query  1326  -GRRPWSTLDNEWAIMYNIAQGNQPQLP--STDQLSELGIDFLRRCFECDPMKRPTAAEL  1382
              G +P+  + NE  ++  +  G +   P    D+L +L    +++C+  DP  RPT +EL
Sbjct  200   LGEQPYPGMSNE-EVLEFLEDGYRLPQPENCPDELYDL----MKQCWAYDPEDRPTFSEL  254

Query  1383  LQH  1385
             ++ 
Sbjct  255   VED  257



Lambda      K        H        a         alpha
   0.317    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1826748200


Query= TCONS_00007366

Length=939
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  320     1e-99
CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal r...  268     1e-85
CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appe...  175     1e-51


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 320 bits (822),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 128/521 (25%), Positives = 238/521 (46%), Gaps = 28/521 (5%)

Query  24   QELK--LQLEKGNDETKVETMKRIITIMLNGDPMSQLLMHIIRFVMPSKSKPLKKLLYFY  81
            QEL   L   + +   K   +K+++ +++ G+ +S L   +++ V  SK   LK+L Y Y
Sbjct  7    QELARILNSFRDDPRKKKNAVKKLLYLIMLGEDISFLFFEVVKLVA-SKDFTLKRLGYLY  65

Query  82   YEICPKHDANGKLKQEMILVCNGIRNDLQHPNEYIRGNTLRFLCKLREPELIEPLLSSAR  141
              +  +   +       ILV N I+ DLQ PN+ IRG  LR L  +R PEL   L    +
Sbjct  66   LMLLAEESPD-----LAILVTNSIQKDLQSPNQLIRGLALRTLSCIRVPELARDLAPDIK  120

Query  142  SCLEHRHAYVRKNAVWAVASIFQHSESLIPDAPELIQTFLESETDSTCKRNAFAALMSIS  201
              L  R  YVRK A  A+  +++ S  L+ D    ++  L S+ D   +  A A L  I 
Sbjct  121  KLLVDRSPYVRKKAALAILKLYRKSPDLVRDFVPELKELL-SDKDPGVQSAAVALLYEIC  179

Query  202  HQ-----KALEYLGTTFDSI-PNTDELLQLAELEFIRKDAVQNTQNKGKYLRLIFDLLEA  255
                   K L  L     ++    +  LQ+  L  + + A  +     + L  + +LL+ 
Sbjct  180  KNDRLYLKLLPLLFRRLCNLLGVLNPWLQVKILRLLTRLAPLDPLLPKELLEDLLNLLQN  239

Query  256  STSTVVYEAATSLTALTSNPVAVKAAAGKLIELCIKEADNNVKLIVLDRVDQLRSRNEGV  315
            S + V+YE A ++  L   P  +  A   L  L     D N++ + L  ++++  +    
Sbjct  240  SNNAVLYETANTIVHLAPAPELIVLAVNALGRLLSSP-DENLRYVALRNLNKIVMKEPKA  298

Query  316  LDDLTMEILRVLSSPDIDVRRKALGIALEMVSSKNVEEVVMLLKKELGKTVDEQYEKNSE  375
            +  L + I  + +  DI +R +AL +   +V+  NV+E+V  L K + +  D       +
Sbjct  299  VQHLDLIIFCLKTDDDISIRLRALDLLYALVNESNVKEIVKELLKYVHEIADP------D  352

Query  376  YRQLLIQSIHHCAIKFSEIAASVVDLLMDFIADFNNNSAVDVISFVKEVVEKFPKLRASI  435
            ++  L+++I   A KF   A   +D+L+D ++   +    +++  ++++++  P+LR  I
Sbjct  353  FKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREYI  412

Query  436  VDRLVSTLSEVRAGKVYRGVLWVVGEYSLEEKDIREAWKRIRSSLGEIPILASEQRLLDE  495
            ++ L   L ++ + +     LW++GEY  E      +   +  S+ E+ +L S +     
Sbjct  413  LEHLCELLEDIESPEALAAALWILGEYG-ELIPNGSSPPDLLRSILEVFVLESAKVRAAA  471

Query  496  VPDETALKEQVNGHTKPSAPTGSRKVLADGTYATESALTSE  536
            +      K  +   T P   T +  +    T AT+ +L  E
Sbjct  472  L--TALAKLGL---TSPEETTQNLIIQLLLTLATQDSLDLE  507


>CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal region. 
 This family is found at the C-terminus of the coatamer beta 
subunit proteins (Beta-coat proteins). This C-terminal domain 
probably adapts the function of the N-terminal pfam01602 
domain.
Length=138

 Score = 268 bits (688),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 96/138 (70%), Positives = 108/138 (78%), Gaps = 1/138 (1%)

Query  679  VDDAIPIRQFTKKSGLEGAEEM-ELDLAKATGGDSTVETVASKLSRVVQLTGFSDPVYAE  737
             DD I  RQ   K G  G E   E DL++ATGGD   +  +SKL+++VQLTGFSDPVYAE
Sbjct  1    PDDPISFRQLKGKKGESGEELQFEDDLSQATGGDIAEDDFSSKLNKIVQLTGFSDPVYAE  60

Query  738  AYVTVHQFDIVLDVLLVNQTLETLQNLSVEFATLGDLKVVERPTTHNLGPRDFLNVQATV  797
            AYVTVHQFDIVLDVLLVNQT ETLQNL+VE ATLGDLK+VERP    L P  F N++ATV
Sbjct  61   AYVTVHQFDIVLDVLLVNQTSETLQNLTVELATLGDLKLVERPQPVTLAPHGFHNIKATV  120

Query  798  KVSSTDTGVIFGNIVYDG  815
            KVSST+TGVIFGNIVYDG
Sbjct  121  KVSSTETGVIFGNIVYDG  138


>CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appendage platform. 
 This family is found at the C-terminus of the coatamer 
beta subunit proteins (Beta-coat proteins). It is a platform 
domain on the appendage that carries a highly conserved 
tryptophan.
Length=128

 Score = 175 bits (445),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 58/91 (64%), Positives = 71/91 (78%), Gaps = 0/91 (0%)

Query  820  ETHVVILNDIHADIMDYIQPAHCTETQFRTMWTEFEWENKVNINSKAKSLREFLKQLMES  879
            + + VILNDIH DIMDYI+PA C + +FR MW EFEWENK+ +N+    LRE+L  LM+ 
Sbjct  1    DRNCVILNDIHIDIMDYIKPATCDDEEFREMWAEFEWENKITVNTNITDLREYLDHLMKK  60

Query  880  TNMACLTPEASLKGDCRFLSANLYARSVFGE  910
            TNM CLTPE +L G+C FLSANLYARS+FGE
Sbjct  61   TNMNCLTPEEALSGECGFLSANLYARSIFGE  91



Lambda      K        H        a         alpha
   0.318    0.132    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0787    0.140     1.90     42.6     43.6 

Effective search space used: 1211573816


Query= TCONS_00007367

Length=939
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  320     1e-99
CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal r...  268     1e-85
CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appe...  175     1e-51


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 320 bits (822),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 128/521 (25%), Positives = 238/521 (46%), Gaps = 28/521 (5%)

Query  24   QELK--LQLEKGNDETKVETMKRIITIMLNGDPMSQLLMHIIRFVMPSKSKPLKKLLYFY  81
            QEL   L   + +   K   +K+++ +++ G+ +S L   +++ V  SK   LK+L Y Y
Sbjct  7    QELARILNSFRDDPRKKKNAVKKLLYLIMLGEDISFLFFEVVKLVA-SKDFTLKRLGYLY  65

Query  82   YEICPKHDANGKLKQEMILVCNGIRNDLQHPNEYIRGNTLRFLCKLREPELIEPLLSSAR  141
              +  +   +       ILV N I+ DLQ PN+ IRG  LR L  +R PEL   L    +
Sbjct  66   LMLLAEESPD-----LAILVTNSIQKDLQSPNQLIRGLALRTLSCIRVPELARDLAPDIK  120

Query  142  SCLEHRHAYVRKNAVWAVASIFQHSESLIPDAPELIQTFLESETDSTCKRNAFAALMSIS  201
              L  R  YVRK A  A+  +++ S  L+ D    ++  L S+ D   +  A A L  I 
Sbjct  121  KLLVDRSPYVRKKAALAILKLYRKSPDLVRDFVPELKELL-SDKDPGVQSAAVALLYEIC  179

Query  202  HQ-----KALEYLGTTFDSI-PNTDELLQLAELEFIRKDAVQNTQNKGKYLRLIFDLLEA  255
                   K L  L     ++    +  LQ+  L  + + A  +     + L  + +LL+ 
Sbjct  180  KNDRLYLKLLPLLFRRLCNLLGVLNPWLQVKILRLLTRLAPLDPLLPKELLEDLLNLLQN  239

Query  256  STSTVVYEAATSLTALTSNPVAVKAAAGKLIELCIKEADNNVKLIVLDRVDQLRSRNEGV  315
            S + V+YE A ++  L   P  +  A   L  L     D N++ + L  ++++  +    
Sbjct  240  SNNAVLYETANTIVHLAPAPELIVLAVNALGRLLSSP-DENLRYVALRNLNKIVMKEPKA  298

Query  316  LDDLTMEILRVLSSPDIDVRRKALGIALEMVSSKNVEEVVMLLKKELGKTVDEQYEKNSE  375
            +  L + I  + +  DI +R +AL +   +V+  NV+E+V  L K + +  D       +
Sbjct  299  VQHLDLIIFCLKTDDDISIRLRALDLLYALVNESNVKEIVKELLKYVHEIADP------D  352

Query  376  YRQLLIQSIHHCAIKFSEIAASVVDLLMDFIADFNNNSAVDVISFVKEVVEKFPKLRASI  435
            ++  L+++I   A KF   A   +D+L+D ++   +    +++  ++++++  P+LR  I
Sbjct  353  FKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREYI  412

Query  436  VDRLVSTLSEVRAGKVYRGVLWVVGEYSLEEKDIREAWKRIRSSLGEIPILASEQRLLDE  495
            ++ L   L ++ + +     LW++GEY  E      +   +  S+ E+ +L S +     
Sbjct  413  LEHLCELLEDIESPEALAAALWILGEYG-ELIPNGSSPPDLLRSILEVFVLESAKVRAAA  471

Query  496  VPDETALKEQVNGHTKPSAPTGSRKVLADGTYATESALTSE  536
            +      K  +   T P   T +  +    T AT+ +L  E
Sbjct  472  L--TALAKLGL---TSPEETTQNLIIQLLLTLATQDSLDLE  507


>CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal region. 
 This family is found at the C-terminus of the coatamer beta 
subunit proteins (Beta-coat proteins). This C-terminal domain 
probably adapts the function of the N-terminal pfam01602 
domain.
Length=138

 Score = 268 bits (688),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 96/138 (70%), Positives = 108/138 (78%), Gaps = 1/138 (1%)

Query  679  VDDAIPIRQFTKKSGLEGAEEM-ELDLAKATGGDSTVETVASKLSRVVQLTGFSDPVYAE  737
             DD I  RQ   K G  G E   E DL++ATGGD   +  +SKL+++VQLTGFSDPVYAE
Sbjct  1    PDDPISFRQLKGKKGESGEELQFEDDLSQATGGDIAEDDFSSKLNKIVQLTGFSDPVYAE  60

Query  738  AYVTVHQFDIVLDVLLVNQTLETLQNLSVEFATLGDLKVVERPTTHNLGPRDFLNVQATV  797
            AYVTVHQFDIVLDVLLVNQT ETLQNL+VE ATLGDLK+VERP    L P  F N++ATV
Sbjct  61   AYVTVHQFDIVLDVLLVNQTSETLQNLTVELATLGDLKLVERPQPVTLAPHGFHNIKATV  120

Query  798  KVSSTDTGVIFGNIVYDG  815
            KVSST+TGVIFGNIVYDG
Sbjct  121  KVSSTETGVIFGNIVYDG  138


>CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appendage platform. 
 This family is found at the C-terminus of the coatamer 
beta subunit proteins (Beta-coat proteins). It is a platform 
domain on the appendage that carries a highly conserved 
tryptophan.
Length=128

 Score = 175 bits (445),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 58/91 (64%), Positives = 71/91 (78%), Gaps = 0/91 (0%)

Query  820  ETHVVILNDIHADIMDYIQPAHCTETQFRTMWTEFEWENKVNINSKAKSLREFLKQLMES  879
            + + VILNDIH DIMDYI+PA C + +FR MW EFEWENK+ +N+    LRE+L  LM+ 
Sbjct  1    DRNCVILNDIHIDIMDYIKPATCDDEEFREMWAEFEWENKITVNTNITDLREYLDHLMKK  60

Query  880  TNMACLTPEASLKGDCRFLSANLYARSVFGE  910
            TNM CLTPE +L G+C FLSANLYARS+FGE
Sbjct  61   TNMNCLTPEEALSGECGFLSANLYARSIFGE  91



Lambda      K        H        a         alpha
   0.318    0.132    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1211573816


Query= TCONS_00001834

Length=955
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  321     8e-100
CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal r...  269     1e-85 
CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appe...  239     1e-74 


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 321 bits (824),  Expect = 8e-100, Method: Composition-based stats.
 Identities = 128/521 (25%), Positives = 238/521 (46%), Gaps = 28/521 (5%)

Query  24   QELK--LQLEKGNDETKVETMKRIITIMLNGDPMSQLLMHIIRFVMPSKSKPLKKLLYFY  81
            QEL   L   + +   K   +K+++ +++ G+ +S L   +++ V  SK   LK+L Y Y
Sbjct  7    QELARILNSFRDDPRKKKNAVKKLLYLIMLGEDISFLFFEVVKLVA-SKDFTLKRLGYLY  65

Query  82   YEICPKHDANGKLKQEMILVCNGIRNDLQHPNEYIRGNTLRFLCKLREPELIEPLLSSAR  141
              +  +   +       ILV N I+ DLQ PN+ IRG  LR L  +R PEL   L    +
Sbjct  66   LMLLAEESPD-----LAILVTNSIQKDLQSPNQLIRGLALRTLSCIRVPELARDLAPDIK  120

Query  142  SCLEHRHAYVRKNAVWAVASIFQHSESLIPDAPELIQTFLESETDSTCKRNAFAALMSIS  201
              L  R  YVRK A  A+  +++ S  L+ D    ++  L S+ D   +  A A L  I 
Sbjct  121  KLLVDRSPYVRKKAALAILKLYRKSPDLVRDFVPELKELL-SDKDPGVQSAAVALLYEIC  179

Query  202  HQ-----KALEYLGTTFDSI-PNTDELLQLAELEFIRKDAVQNTQNKGKYLRLIFDLLEA  255
                   K L  L     ++    +  LQ+  L  + + A  +     + L  + +LL+ 
Sbjct  180  KNDRLYLKLLPLLFRRLCNLLGVLNPWLQVKILRLLTRLAPLDPLLPKELLEDLLNLLQN  239

Query  256  STSTVVYEAATSLTALTSNPVAVKAAAGKLIELCIKEADNNVKLIVLDRVDQLRSRNEGV  315
            S + V+YE A ++  L   P  +  A   L  L     D N++ + L  ++++  +    
Sbjct  240  SNNAVLYETANTIVHLAPAPELIVLAVNALGRLLSSP-DENLRYVALRNLNKIVMKEPKA  298

Query  316  LDDLTMEILRVLSSPDIDVRRKALGIALEMVSSKNVEEVVMLLKKELGKTVDEQYEKNSE  375
            +  L + I  + +  DI +R +AL +   +V+  NV+E+V  L K + +  D       +
Sbjct  299  VQHLDLIIFCLKTDDDISIRLRALDLLYALVNESNVKEIVKELLKYVHEIADP------D  352

Query  376  YRQLLIQSIHHCAIKFSEIAASVVDLLMDFIADFNNNSAVDVISFVKEVVEKFPKLRASI  435
            ++  L+++I   A KF   A   +D+L+D ++   +    +++  ++++++  P+LR  I
Sbjct  353  FKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREYI  412

Query  436  VDRLVSTLSEVRAGKVYRGVLWVVGEYSLEEKDIREAWKRIRSSLGEIPILASEQRLLDE  495
            ++ L   L ++ + +     LW++GEY  E      +   +  S+ E+ +L S +     
Sbjct  413  LEHLCELLEDIESPEALAAALWILGEYG-ELIPNGSSPPDLLRSILEVFVLESAKVRAAA  471

Query  496  VPDETALKEQVNGHTKPSAPTGSRKVLADGTYATESALTSE  536
            +      K  +   T P   T +  +    T AT+ +L  E
Sbjct  472  L--TALAKLGL---TSPEETTQNLIIQLLLTLATQDSLDLE  507


>CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal region. 
 This family is found at the C-terminus of the coatamer beta 
subunit proteins (Beta-coat proteins). This C-terminal domain 
probably adapts the function of the N-terminal pfam01602 
domain.
Length=138

 Score = 269 bits (689),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 96/138 (70%), Positives = 108/138 (78%), Gaps = 1/138 (1%)

Query  679  VDDAIPIRQFTKKSGLEGAEEM-ELDLAKATGGDSTVETVASKLSRVVQLTGFSDPVYAE  737
             DD I  RQ   K G  G E   E DL++ATGGD   +  +SKL+++VQLTGFSDPVYAE
Sbjct  1    PDDPISFRQLKGKKGESGEELQFEDDLSQATGGDIAEDDFSSKLNKIVQLTGFSDPVYAE  60

Query  738  AYVTVHQFDIVLDVLLVNQTLETLQNLSVEFATLGDLKVVERPTTHNLGPRDFLNVQATV  797
            AYVTVHQFDIVLDVLLVNQT ETLQNL+VE ATLGDLK+VERP    L P  F N++ATV
Sbjct  61   AYVTVHQFDIVLDVLLVNQTSETLQNLTVELATLGDLKLVERPQPVTLAPHGFHNIKATV  120

Query  798  KVSSTDTGVIFGNIVYDG  815
            KVSST+TGVIFGNIVYDG
Sbjct  121  KVSSTETGVIFGNIVYDG  138


>CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appendage platform. 
 This family is found at the C-terminus of the coatamer 
beta subunit proteins (Beta-coat proteins). It is a platform 
domain on the appendage that carries a highly conserved 
tryptophan.
Length=128

 Score = 239 bits (611),  Expect = 1e-74, Method: Composition-based stats.
 Identities = 85/127 (67%), Positives = 103/127 (81%), Gaps = 1/127 (1%)

Query  820  ETHVVILNDIHADIMDYIQPAHCTETQFRTMWTEFEWENKVNINSKAKSLREFLKQLMES  879
            + + VILNDIH DIMDYI+PA C + +FR MW EFEWENK+ +N+    LRE+L  LM+ 
Sbjct  1    DRNCVILNDIHIDIMDYIKPATCDDEEFREMWAEFEWENKITVNTNITDLREYLDHLMKK  60

Query  880  TNMACLTPEASLKGDCRFLSANLYARSVFGEDALANLSIEKEGEDGPITGFVRIRSRSQG  939
            TNM CLTPE +L G+C FLSANLYARS+FGEDALANLSIEK+G DG I+G VRIRS++QG
Sbjct  61   TNMNCLTPEEALSGECGFLSANLYARSIFGEDALANLSIEKDG-DGKISGHVRIRSKTQG  119

Query  940  LALSLGS  946
            +ALSLG 
Sbjct  120  IALSLGD  126



Lambda      K        H        a         alpha
   0.317    0.131    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1216237484


Query= TCONS_00007368

Length=955
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  321     8e-100
CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal r...  269     1e-85 
CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appe...  239     1e-74 


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 321 bits (824),  Expect = 8e-100, Method: Composition-based stats.
 Identities = 128/521 (25%), Positives = 238/521 (46%), Gaps = 28/521 (5%)

Query  24   QELK--LQLEKGNDETKVETMKRIITIMLNGDPMSQLLMHIIRFVMPSKSKPLKKLLYFY  81
            QEL   L   + +   K   +K+++ +++ G+ +S L   +++ V  SK   LK+L Y Y
Sbjct  7    QELARILNSFRDDPRKKKNAVKKLLYLIMLGEDISFLFFEVVKLVA-SKDFTLKRLGYLY  65

Query  82   YEICPKHDANGKLKQEMILVCNGIRNDLQHPNEYIRGNTLRFLCKLREPELIEPLLSSAR  141
              +  +   +       ILV N I+ DLQ PN+ IRG  LR L  +R PEL   L    +
Sbjct  66   LMLLAEESPD-----LAILVTNSIQKDLQSPNQLIRGLALRTLSCIRVPELARDLAPDIK  120

Query  142  SCLEHRHAYVRKNAVWAVASIFQHSESLIPDAPELIQTFLESETDSTCKRNAFAALMSIS  201
              L  R  YVRK A  A+  +++ S  L+ D    ++  L S+ D   +  A A L  I 
Sbjct  121  KLLVDRSPYVRKKAALAILKLYRKSPDLVRDFVPELKELL-SDKDPGVQSAAVALLYEIC  179

Query  202  HQ-----KALEYLGTTFDSI-PNTDELLQLAELEFIRKDAVQNTQNKGKYLRLIFDLLEA  255
                   K L  L     ++    +  LQ+  L  + + A  +     + L  + +LL+ 
Sbjct  180  KNDRLYLKLLPLLFRRLCNLLGVLNPWLQVKILRLLTRLAPLDPLLPKELLEDLLNLLQN  239

Query  256  STSTVVYEAATSLTALTSNPVAVKAAAGKLIELCIKEADNNVKLIVLDRVDQLRSRNEGV  315
            S + V+YE A ++  L   P  +  A   L  L     D N++ + L  ++++  +    
Sbjct  240  SNNAVLYETANTIVHLAPAPELIVLAVNALGRLLSSP-DENLRYVALRNLNKIVMKEPKA  298

Query  316  LDDLTMEILRVLSSPDIDVRRKALGIALEMVSSKNVEEVVMLLKKELGKTVDEQYEKNSE  375
            +  L + I  + +  DI +R +AL +   +V+  NV+E+V  L K + +  D       +
Sbjct  299  VQHLDLIIFCLKTDDDISIRLRALDLLYALVNESNVKEIVKELLKYVHEIADP------D  352

Query  376  YRQLLIQSIHHCAIKFSEIAASVVDLLMDFIADFNNNSAVDVISFVKEVVEKFPKLRASI  435
            ++  L+++I   A KF   A   +D+L+D ++   +    +++  ++++++  P+LR  I
Sbjct  353  FKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREYI  412

Query  436  VDRLVSTLSEVRAGKVYRGVLWVVGEYSLEEKDIREAWKRIRSSLGEIPILASEQRLLDE  495
            ++ L   L ++ + +     LW++GEY  E      +   +  S+ E+ +L S +     
Sbjct  413  LEHLCELLEDIESPEALAAALWILGEYG-ELIPNGSSPPDLLRSILEVFVLESAKVRAAA  471

Query  496  VPDETALKEQVNGHTKPSAPTGSRKVLADGTYATESALTSE  536
            +      K  +   T P   T +  +    T AT+ +L  E
Sbjct  472  L--TALAKLGL---TSPEETTQNLIIQLLLTLATQDSLDLE  507


>CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal region. 
 This family is found at the C-terminus of the coatamer beta 
subunit proteins (Beta-coat proteins). This C-terminal domain 
probably adapts the function of the N-terminal pfam01602 
domain.
Length=138

 Score = 269 bits (689),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 96/138 (70%), Positives = 108/138 (78%), Gaps = 1/138 (1%)

Query  679  VDDAIPIRQFTKKSGLEGAEEM-ELDLAKATGGDSTVETVASKLSRVVQLTGFSDPVYAE  737
             DD I  RQ   K G  G E   E DL++ATGGD   +  +SKL+++VQLTGFSDPVYAE
Sbjct  1    PDDPISFRQLKGKKGESGEELQFEDDLSQATGGDIAEDDFSSKLNKIVQLTGFSDPVYAE  60

Query  738  AYVTVHQFDIVLDVLLVNQTLETLQNLSVEFATLGDLKVVERPTTHNLGPRDFLNVQATV  797
            AYVTVHQFDIVLDVLLVNQT ETLQNL+VE ATLGDLK+VERP    L P  F N++ATV
Sbjct  61   AYVTVHQFDIVLDVLLVNQTSETLQNLTVELATLGDLKLVERPQPVTLAPHGFHNIKATV  120

Query  798  KVSSTDTGVIFGNIVYDG  815
            KVSST+TGVIFGNIVYDG
Sbjct  121  KVSSTETGVIFGNIVYDG  138


>CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appendage platform. 
 This family is found at the C-terminus of the coatamer 
beta subunit proteins (Beta-coat proteins). It is a platform 
domain on the appendage that carries a highly conserved 
tryptophan.
Length=128

 Score = 239 bits (611),  Expect = 1e-74, Method: Composition-based stats.
 Identities = 85/127 (67%), Positives = 103/127 (81%), Gaps = 1/127 (1%)

Query  820  ETHVVILNDIHADIMDYIQPAHCTETQFRTMWTEFEWENKVNINSKAKSLREFLKQLMES  879
            + + VILNDIH DIMDYI+PA C + +FR MW EFEWENK+ +N+    LRE+L  LM+ 
Sbjct  1    DRNCVILNDIHIDIMDYIKPATCDDEEFREMWAEFEWENKITVNTNITDLREYLDHLMKK  60

Query  880  TNMACLTPEASLKGDCRFLSANLYARSVFGEDALANLSIEKEGEDGPITGFVRIRSRSQG  939
            TNM CLTPE +L G+C FLSANLYARS+FGEDALANLSIEK+G DG I+G VRIRS++QG
Sbjct  61   TNMNCLTPEEALSGECGFLSANLYARSIFGEDALANLSIEKDG-DGKISGHVRIRSKTQG  119

Query  940  LALSLGS  946
            +ALSLG 
Sbjct  120  IALSLGD  126



Lambda      K        H        a         alpha
   0.317    0.131    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1216237484


Query= TCONS_00001835

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal r...  268     6e-89
CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appe...  240     2e-78
CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  64.2    3e-11


>CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal region. 
 This family is found at the C-terminus of the coatamer beta 
subunit proteins (Beta-coat proteins). This C-terminal domain 
probably adapts the function of the N-terminal pfam01602 
domain.
Length=138

 Score = 268 bits (687),  Expect = 6e-89, Method: Composition-based stats.
 Identities = 96/138 (70%), Positives = 108/138 (78%), Gaps = 1/138 (1%)

Query  277  VDDAIPIRQFTKKSGLEGAEEM-ELDLAKATGGDSTVETVASKLSRVVQLTGFSDPVYAE  335
             DD I  RQ   K G  G E   E DL++ATGGD   +  +SKL+++VQLTGFSDPVYAE
Sbjct  1    PDDPISFRQLKGKKGESGEELQFEDDLSQATGGDIAEDDFSSKLNKIVQLTGFSDPVYAE  60

Query  336  AYVTVHQFDIVLDVLLVNQTLETLQNLSVEFATLGDLKVVERPTTHNLGPRDFLNVQATV  395
            AYVTVHQFDIVLDVLLVNQT ETLQNL+VE ATLGDLK+VERP    L P  F N++ATV
Sbjct  61   AYVTVHQFDIVLDVLLVNQTSETLQNLTVELATLGDLKLVERPQPVTLAPHGFHNIKATV  120

Query  396  KVSSTDTGVIFGNIVYDG  413
            KVSST+TGVIFGNIVYDG
Sbjct  121  KVSSTETGVIFGNIVYDG  138


>CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appendage platform. 
 This family is found at the C-terminus of the coatamer 
beta subunit proteins (Beta-coat proteins). It is a platform 
domain on the appendage that carries a highly conserved 
tryptophan.
Length=128

 Score = 240 bits (616),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 85/127 (67%), Positives = 103/127 (81%), Gaps = 1/127 (1%)

Query  418  ETHVVILNDIHADIMDYIQPAHCTETQFRTMWTEFEWENKVNINSKAKSLREFLKQLMES  477
            + + VILNDIH DIMDYI+PA C + +FR MW EFEWENK+ +N+    LRE+L  LM+ 
Sbjct  1    DRNCVILNDIHIDIMDYIKPATCDDEEFREMWAEFEWENKITVNTNITDLREYLDHLMKK  60

Query  478  TNMACLTPEASLKGDCRFLSANLYARSVFGEDALANLSIEKEGEDGPITGFVRIRSRSQG  537
            TNM CLTPE +L G+C FLSANLYARS+FGEDALANLSIEK+G DG I+G VRIRS++QG
Sbjct  61   TNMNCLTPEEALSGECGFLSANLYARSIFGEDALANLSIEKDG-DGKISGHVRIRSKTQG  119

Query  538  LALSLGS  544
            +ALSLG 
Sbjct  120  IALSLGD  126


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 64.2 bits (157),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 61/138 (44%), Gaps = 10/138 (7%)

Query  1    MDFIADF---NNNSAVD-VISFVKEVVEKFPKLRASIVDRLVSTLSEVRAGKVYRGVLWV  56
            +D + D      +  VD ++  ++++++  P+LR  I++ L   L ++ + +     LW+
Sbjct  376  LDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREYILEHLCELLEDIESPEALAAALWI  435

Query  57   VGEYSLEEKDIREAWKRIRSSLGEIPILASEQRLLDEVPDETALKEQVNGHTKPSAPTGS  116
            +GEY  E      +   +  S+ E+ +L S +     +      K  +   T P   T +
Sbjct  436  LGEYG-ELIPNGSSPPDLLRSILEVFVLESAKVRAAAL--TALAKLGL---TSPEETTQN  489

Query  117  RKVLADGTYATESALTSE  134
              +    T AT+ +L  E
Sbjct  490  LIIQLLLTLATQDSLDLE  507



Lambda      K        H        a         alpha
   0.316    0.130    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00001837

Length=635
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal r...  267     7e-88
CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appe...  239     4e-77
CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  128     8e-32


>CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal region. 
 This family is found at the C-terminus of the coatamer beta 
subunit proteins (Beta-coat proteins). This C-terminal domain 
probably adapts the function of the N-terminal pfam01602 
domain.
Length=138

 Score = 267 bits (686),  Expect = 7e-88, Method: Composition-based stats.
 Identities = 96/138 (70%), Positives = 108/138 (78%), Gaps = 1/138 (1%)

Query  359  VDDAIPIRQFTKKSGLEGAEEM-ELDLAKATGGDSTVETVASKLSRVVQLTGFSDPVYAE  417
             DD I  RQ   K G  G E   E DL++ATGGD   +  +SKL+++VQLTGFSDPVYAE
Sbjct  1    PDDPISFRQLKGKKGESGEELQFEDDLSQATGGDIAEDDFSSKLNKIVQLTGFSDPVYAE  60

Query  418  AYVTVHQFDIVLDVLLVNQTLETLQNLSVEFATLGDLKVVERPTTHNLGPRDFLNVQATV  477
            AYVTVHQFDIVLDVLLVNQT ETLQNL+VE ATLGDLK+VERP    L P  F N++ATV
Sbjct  61   AYVTVHQFDIVLDVLLVNQTSETLQNLTVELATLGDLKLVERPQPVTLAPHGFHNIKATV  120

Query  478  KVSSTDTGVIFGNIVYDG  495
            KVSST+TGVIFGNIVYDG
Sbjct  121  KVSSTETGVIFGNIVYDG  138


>CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appendage platform. 
 This family is found at the C-terminus of the coatamer 
beta subunit proteins (Beta-coat proteins). It is a platform 
domain on the appendage that carries a highly conserved 
tryptophan.
Length=128

 Score = 239 bits (613),  Expect = 4e-77, Method: Composition-based stats.
 Identities = 85/127 (67%), Positives = 103/127 (81%), Gaps = 1/127 (1%)

Query  500  ETHVVILNDIHADIMDYIQPAHCTETQFRTMWTEFEWENKVNINSKAKSLREFLKQLMES  559
            + + VILNDIH DIMDYI+PA C + +FR MW EFEWENK+ +N+    LRE+L  LM+ 
Sbjct  1    DRNCVILNDIHIDIMDYIKPATCDDEEFREMWAEFEWENKITVNTNITDLREYLDHLMKK  60

Query  560  TNMACLTPEASLKGDCRFLSANLYARSVFGEDALANLSIEKEGEDGPITGFVRIRSRSQG  619
            TNM CLTPE +L G+C FLSANLYARS+FGEDALANLSIEK+G DG I+G VRIRS++QG
Sbjct  61   TNMNCLTPEEALSGECGFLSANLYARSIFGEDALANLSIEKDG-DGKISGHVRIRSKTQG  119

Query  620  LALSLGS  626
            +ALSLG 
Sbjct  120  IALSLGD  126


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 128 bits (323),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 102/216 (47%), Gaps = 12/216 (6%)

Query  1    MEILRVLSSPDIDVRRKALGIALEMVSSKNVEEVVMLLKKELGKTVDEQYEKNSEYRQLL  60
            + I  + +  DI +R +AL +   +V+  NV+E+V  L K + +  D       +++  L
Sbjct  304  LIIFCLKTDDDISIRLRALDLLYALVNESNVKEIVKELLKYVHEIADP------DFKIEL  357

Query  61   IQSIHHCAIKFSEIAASVVDLLMDFIADFNNNSAVDVISFVKEVVEKFPKLRASIVDRLV  120
            +++I   A KF   A   +D+L+D ++   +    +++  ++++++  P+LR  I++ L 
Sbjct  358  VRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREYILEHLC  417

Query  121  STLSEVRAGKVYRGVLWVVGEYSLEEKDIREAWKRIRSSLGEIPILASEQRLLDEVPDET  180
              L ++ + +     LW++GEY  E      +   +  S+ E+ +L S +     +    
Sbjct  418  ELLEDIESPEALAAALWILGEYG-ELIPNGSSPPDLLRSILEVFVLESAKVRAAAL--TA  474

Query  181  ALKEQVNGHTKPSAPTGSRKVLADGTYATESALTSE  216
              K  +   T P   T +  +    T AT+ +L  E
Sbjct  475  LAKLGL---TSPEETTQNLIIQLLLTLATQDSLDLE  507



Lambda      K        H        a         alpha
   0.316    0.130    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 799336180


Query= TCONS_00007369

Length=635
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal r...  267     7e-88
CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appe...  239     4e-77
CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  128     8e-32


>CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal region. 
 This family is found at the C-terminus of the coatamer beta 
subunit proteins (Beta-coat proteins). This C-terminal domain 
probably adapts the function of the N-terminal pfam01602 
domain.
Length=138

 Score = 267 bits (686),  Expect = 7e-88, Method: Composition-based stats.
 Identities = 96/138 (70%), Positives = 108/138 (78%), Gaps = 1/138 (1%)

Query  359  VDDAIPIRQFTKKSGLEGAEEM-ELDLAKATGGDSTVETVASKLSRVVQLTGFSDPVYAE  417
             DD I  RQ   K G  G E   E DL++ATGGD   +  +SKL+++VQLTGFSDPVYAE
Sbjct  1    PDDPISFRQLKGKKGESGEELQFEDDLSQATGGDIAEDDFSSKLNKIVQLTGFSDPVYAE  60

Query  418  AYVTVHQFDIVLDVLLVNQTLETLQNLSVEFATLGDLKVVERPTTHNLGPRDFLNVQATV  477
            AYVTVHQFDIVLDVLLVNQT ETLQNL+VE ATLGDLK+VERP    L P  F N++ATV
Sbjct  61   AYVTVHQFDIVLDVLLVNQTSETLQNLTVELATLGDLKLVERPQPVTLAPHGFHNIKATV  120

Query  478  KVSSTDTGVIFGNIVYDG  495
            KVSST+TGVIFGNIVYDG
Sbjct  121  KVSSTETGVIFGNIVYDG  138


>CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appendage platform. 
 This family is found at the C-terminus of the coatamer 
beta subunit proteins (Beta-coat proteins). It is a platform 
domain on the appendage that carries a highly conserved 
tryptophan.
Length=128

 Score = 239 bits (613),  Expect = 4e-77, Method: Composition-based stats.
 Identities = 85/127 (67%), Positives = 103/127 (81%), Gaps = 1/127 (1%)

Query  500  ETHVVILNDIHADIMDYIQPAHCTETQFRTMWTEFEWENKVNINSKAKSLREFLKQLMES  559
            + + VILNDIH DIMDYI+PA C + +FR MW EFEWENK+ +N+    LRE+L  LM+ 
Sbjct  1    DRNCVILNDIHIDIMDYIKPATCDDEEFREMWAEFEWENKITVNTNITDLREYLDHLMKK  60

Query  560  TNMACLTPEASLKGDCRFLSANLYARSVFGEDALANLSIEKEGEDGPITGFVRIRSRSQG  619
            TNM CLTPE +L G+C FLSANLYARS+FGEDALANLSIEK+G DG I+G VRIRS++QG
Sbjct  61   TNMNCLTPEEALSGECGFLSANLYARSIFGEDALANLSIEKDG-DGKISGHVRIRSKTQG  119

Query  620  LALSLGS  626
            +ALSLG 
Sbjct  120  IALSLGD  126


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 128 bits (323),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 102/216 (47%), Gaps = 12/216 (6%)

Query  1    MEILRVLSSPDIDVRRKALGIALEMVSSKNVEEVVMLLKKELGKTVDEQYEKNSEYRQLL  60
            + I  + +  DI +R +AL +   +V+  NV+E+V  L K + +  D       +++  L
Sbjct  304  LIIFCLKTDDDISIRLRALDLLYALVNESNVKEIVKELLKYVHEIADP------DFKIEL  357

Query  61   IQSIHHCAIKFSEIAASVVDLLMDFIADFNNNSAVDVISFVKEVVEKFPKLRASIVDRLV  120
            +++I   A KF   A   +D+L+D ++   +    +++  ++++++  P+LR  I++ L 
Sbjct  358  VRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREYILEHLC  417

Query  121  STLSEVRAGKVYRGVLWVVGEYSLEEKDIREAWKRIRSSLGEIPILASEQRLLDEVPDET  180
              L ++ + +     LW++GEY  E      +   +  S+ E+ +L S +     +    
Sbjct  418  ELLEDIESPEALAAALWILGEYG-ELIPNGSSPPDLLRSILEVFVLESAKVRAAAL--TA  474

Query  181  ALKEQVNGHTKPSAPTGSRKVLADGTYATESALTSE  216
              K  +   T P   T +  +    T AT+ +L  E
Sbjct  475  LAKLGL---TSPEETTQNLIIQLLLTLATQDSLDLE  507



Lambda      K        H        a         alpha
   0.316    0.130    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 799336180


Query= TCONS_00001838

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal r...  268     6e-89
CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appe...  240     2e-78
CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  64.2    3e-11


>CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal region. 
 This family is found at the C-terminus of the coatamer beta 
subunit proteins (Beta-coat proteins). This C-terminal domain 
probably adapts the function of the N-terminal pfam01602 
domain.
Length=138

 Score = 268 bits (687),  Expect = 6e-89, Method: Composition-based stats.
 Identities = 96/138 (70%), Positives = 108/138 (78%), Gaps = 1/138 (1%)

Query  277  VDDAIPIRQFTKKSGLEGAEEM-ELDLAKATGGDSTVETVASKLSRVVQLTGFSDPVYAE  335
             DD I  RQ   K G  G E   E DL++ATGGD   +  +SKL+++VQLTGFSDPVYAE
Sbjct  1    PDDPISFRQLKGKKGESGEELQFEDDLSQATGGDIAEDDFSSKLNKIVQLTGFSDPVYAE  60

Query  336  AYVTVHQFDIVLDVLLVNQTLETLQNLSVEFATLGDLKVVERPTTHNLGPRDFLNVQATV  395
            AYVTVHQFDIVLDVLLVNQT ETLQNL+VE ATLGDLK+VERP    L P  F N++ATV
Sbjct  61   AYVTVHQFDIVLDVLLVNQTSETLQNLTVELATLGDLKLVERPQPVTLAPHGFHNIKATV  120

Query  396  KVSSTDTGVIFGNIVYDG  413
            KVSST+TGVIFGNIVYDG
Sbjct  121  KVSSTETGVIFGNIVYDG  138


>CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appendage platform. 
 This family is found at the C-terminus of the coatamer 
beta subunit proteins (Beta-coat proteins). It is a platform 
domain on the appendage that carries a highly conserved 
tryptophan.
Length=128

 Score = 240 bits (616),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 85/127 (67%), Positives = 103/127 (81%), Gaps = 1/127 (1%)

Query  418  ETHVVILNDIHADIMDYIQPAHCTETQFRTMWTEFEWENKVNINSKAKSLREFLKQLMES  477
            + + VILNDIH DIMDYI+PA C + +FR MW EFEWENK+ +N+    LRE+L  LM+ 
Sbjct  1    DRNCVILNDIHIDIMDYIKPATCDDEEFREMWAEFEWENKITVNTNITDLREYLDHLMKK  60

Query  478  TNMACLTPEASLKGDCRFLSANLYARSVFGEDALANLSIEKEGEDGPITGFVRIRSRSQG  537
            TNM CLTPE +L G+C FLSANLYARS+FGEDALANLSIEK+G DG I+G VRIRS++QG
Sbjct  61   TNMNCLTPEEALSGECGFLSANLYARSIFGEDALANLSIEKDG-DGKISGHVRIRSKTQG  119

Query  538  LALSLGS  544
            +ALSLG 
Sbjct  120  IALSLGD  126


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 64.2 bits (157),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 61/138 (44%), Gaps = 10/138 (7%)

Query  1    MDFIADF---NNNSAVD-VISFVKEVVEKFPKLRASIVDRLVSTLSEVRAGKVYRGVLWV  56
            +D + D      +  VD ++  ++++++  P+LR  I++ L   L ++ + +     LW+
Sbjct  376  LDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREYILEHLCELLEDIESPEALAAALWI  435

Query  57   VGEYSLEEKDIREAWKRIRSSLGEIPILASEQRLLDEVPDETALKEQVNGHTKPSAPTGS  116
            +GEY  E      +   +  S+ E+ +L S +     +      K  +   T P   T +
Sbjct  436  LGEYG-ELIPNGSSPPDLLRSILEVFVLESAKVRAAAL--TALAKLGL---TSPEETTQN  489

Query  117  RKVLADGTYATESALTSE  134
              +    T AT+ +L  E
Sbjct  490  LIIQLLLTLATQDSLDLE  507



Lambda      K        H        a         alpha
   0.316    0.130    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00001839

Length=955
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  321     8e-100
CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal r...  269     1e-85 
CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appe...  239     1e-74 


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 321 bits (824),  Expect = 8e-100, Method: Composition-based stats.
 Identities = 128/521 (25%), Positives = 238/521 (46%), Gaps = 28/521 (5%)

Query  24   QELK--LQLEKGNDETKVETMKRIITIMLNGDPMSQLLMHIIRFVMPSKSKPLKKLLYFY  81
            QEL   L   + +   K   +K+++ +++ G+ +S L   +++ V  SK   LK+L Y Y
Sbjct  7    QELARILNSFRDDPRKKKNAVKKLLYLIMLGEDISFLFFEVVKLVA-SKDFTLKRLGYLY  65

Query  82   YEICPKHDANGKLKQEMILVCNGIRNDLQHPNEYIRGNTLRFLCKLREPELIEPLLSSAR  141
              +  +   +       ILV N I+ DLQ PN+ IRG  LR L  +R PEL   L    +
Sbjct  66   LMLLAEESPD-----LAILVTNSIQKDLQSPNQLIRGLALRTLSCIRVPELARDLAPDIK  120

Query  142  SCLEHRHAYVRKNAVWAVASIFQHSESLIPDAPELIQTFLESETDSTCKRNAFAALMSIS  201
              L  R  YVRK A  A+  +++ S  L+ D    ++  L S+ D   +  A A L  I 
Sbjct  121  KLLVDRSPYVRKKAALAILKLYRKSPDLVRDFVPELKELL-SDKDPGVQSAAVALLYEIC  179

Query  202  HQ-----KALEYLGTTFDSI-PNTDELLQLAELEFIRKDAVQNTQNKGKYLRLIFDLLEA  255
                   K L  L     ++    +  LQ+  L  + + A  +     + L  + +LL+ 
Sbjct  180  KNDRLYLKLLPLLFRRLCNLLGVLNPWLQVKILRLLTRLAPLDPLLPKELLEDLLNLLQN  239

Query  256  STSTVVYEAATSLTALTSNPVAVKAAAGKLIELCIKEADNNVKLIVLDRVDQLRSRNEGV  315
            S + V+YE A ++  L   P  +  A   L  L     D N++ + L  ++++  +    
Sbjct  240  SNNAVLYETANTIVHLAPAPELIVLAVNALGRLLSSP-DENLRYVALRNLNKIVMKEPKA  298

Query  316  LDDLTMEILRVLSSPDIDVRRKALGIALEMVSSKNVEEVVMLLKKELGKTVDEQYEKNSE  375
            +  L + I  + +  DI +R +AL +   +V+  NV+E+V  L K + +  D       +
Sbjct  299  VQHLDLIIFCLKTDDDISIRLRALDLLYALVNESNVKEIVKELLKYVHEIADP------D  352

Query  376  YRQLLIQSIHHCAIKFSEIAASVVDLLMDFIADFNNNSAVDVISFVKEVVEKFPKLRASI  435
            ++  L+++I   A KF   A   +D+L+D ++   +    +++  ++++++  P+LR  I
Sbjct  353  FKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREYI  412

Query  436  VDRLVSTLSEVRAGKVYRGVLWVVGEYSLEEKDIREAWKRIRSSLGEIPILASEQRLLDE  495
            ++ L   L ++ + +     LW++GEY  E      +   +  S+ E+ +L S +     
Sbjct  413  LEHLCELLEDIESPEALAAALWILGEYG-ELIPNGSSPPDLLRSILEVFVLESAKVRAAA  471

Query  496  VPDETALKEQVNGHTKPSAPTGSRKVLADGTYATESALTSE  536
            +      K  +   T P   T +  +    T AT+ +L  E
Sbjct  472  L--TALAKLGL---TSPEETTQNLIIQLLLTLATQDSLDLE  507


>CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal region. 
 This family is found at the C-terminus of the coatamer beta 
subunit proteins (Beta-coat proteins). This C-terminal domain 
probably adapts the function of the N-terminal pfam01602 
domain.
Length=138

 Score = 269 bits (689),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 96/138 (70%), Positives = 108/138 (78%), Gaps = 1/138 (1%)

Query  679  VDDAIPIRQFTKKSGLEGAEEM-ELDLAKATGGDSTVETVASKLSRVVQLTGFSDPVYAE  737
             DD I  RQ   K G  G E   E DL++ATGGD   +  +SKL+++VQLTGFSDPVYAE
Sbjct  1    PDDPISFRQLKGKKGESGEELQFEDDLSQATGGDIAEDDFSSKLNKIVQLTGFSDPVYAE  60

Query  738  AYVTVHQFDIVLDVLLVNQTLETLQNLSVEFATLGDLKVVERPTTHNLGPRDFLNVQATV  797
            AYVTVHQFDIVLDVLLVNQT ETLQNL+VE ATLGDLK+VERP    L P  F N++ATV
Sbjct  61   AYVTVHQFDIVLDVLLVNQTSETLQNLTVELATLGDLKLVERPQPVTLAPHGFHNIKATV  120

Query  798  KVSSTDTGVIFGNIVYDG  815
            KVSST+TGVIFGNIVYDG
Sbjct  121  KVSSTETGVIFGNIVYDG  138


>CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appendage platform. 
 This family is found at the C-terminus of the coatamer 
beta subunit proteins (Beta-coat proteins). It is a platform 
domain on the appendage that carries a highly conserved 
tryptophan.
Length=128

 Score = 239 bits (611),  Expect = 1e-74, Method: Composition-based stats.
 Identities = 85/127 (67%), Positives = 103/127 (81%), Gaps = 1/127 (1%)

Query  820  ETHVVILNDIHADIMDYIQPAHCTETQFRTMWTEFEWENKVNINSKAKSLREFLKQLMES  879
            + + VILNDIH DIMDYI+PA C + +FR MW EFEWENK+ +N+    LRE+L  LM+ 
Sbjct  1    DRNCVILNDIHIDIMDYIKPATCDDEEFREMWAEFEWENKITVNTNITDLREYLDHLMKK  60

Query  880  TNMACLTPEASLKGDCRFLSANLYARSVFGEDALANLSIEKEGEDGPITGFVRIRSRSQG  939
            TNM CLTPE +L G+C FLSANLYARS+FGEDALANLSIEK+G DG I+G VRIRS++QG
Sbjct  61   TNMNCLTPEEALSGECGFLSANLYARSIFGEDALANLSIEKDG-DGKISGHVRIRSKTQG  119

Query  940  LALSLGS  946
            +ALSLG 
Sbjct  120  IALSLGD  126



Lambda      K        H        a         alpha
   0.317    0.131    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1216237484


Query= TCONS_00001836

Length=939
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  320     1e-99
CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal r...  268     1e-85
CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appe...  175     1e-51


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 320 bits (822),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 128/521 (25%), Positives = 238/521 (46%), Gaps = 28/521 (5%)

Query  24   QELK--LQLEKGNDETKVETMKRIITIMLNGDPMSQLLMHIIRFVMPSKSKPLKKLLYFY  81
            QEL   L   + +   K   +K+++ +++ G+ +S L   +++ V  SK   LK+L Y Y
Sbjct  7    QELARILNSFRDDPRKKKNAVKKLLYLIMLGEDISFLFFEVVKLVA-SKDFTLKRLGYLY  65

Query  82   YEICPKHDANGKLKQEMILVCNGIRNDLQHPNEYIRGNTLRFLCKLREPELIEPLLSSAR  141
              +  +   +       ILV N I+ DLQ PN+ IRG  LR L  +R PEL   L    +
Sbjct  66   LMLLAEESPD-----LAILVTNSIQKDLQSPNQLIRGLALRTLSCIRVPELARDLAPDIK  120

Query  142  SCLEHRHAYVRKNAVWAVASIFQHSESLIPDAPELIQTFLESETDSTCKRNAFAALMSIS  201
              L  R  YVRK A  A+  +++ S  L+ D    ++  L S+ D   +  A A L  I 
Sbjct  121  KLLVDRSPYVRKKAALAILKLYRKSPDLVRDFVPELKELL-SDKDPGVQSAAVALLYEIC  179

Query  202  HQ-----KALEYLGTTFDSI-PNTDELLQLAELEFIRKDAVQNTQNKGKYLRLIFDLLEA  255
                   K L  L     ++    +  LQ+  L  + + A  +     + L  + +LL+ 
Sbjct  180  KNDRLYLKLLPLLFRRLCNLLGVLNPWLQVKILRLLTRLAPLDPLLPKELLEDLLNLLQN  239

Query  256  STSTVVYEAATSLTALTSNPVAVKAAAGKLIELCIKEADNNVKLIVLDRVDQLRSRNEGV  315
            S + V+YE A ++  L   P  +  A   L  L     D N++ + L  ++++  +    
Sbjct  240  SNNAVLYETANTIVHLAPAPELIVLAVNALGRLLSSP-DENLRYVALRNLNKIVMKEPKA  298

Query  316  LDDLTMEILRVLSSPDIDVRRKALGIALEMVSSKNVEEVVMLLKKELGKTVDEQYEKNSE  375
            +  L + I  + +  DI +R +AL +   +V+  NV+E+V  L K + +  D       +
Sbjct  299  VQHLDLIIFCLKTDDDISIRLRALDLLYALVNESNVKEIVKELLKYVHEIADP------D  352

Query  376  YRQLLIQSIHHCAIKFSEIAASVVDLLMDFIADFNNNSAVDVISFVKEVVEKFPKLRASI  435
            ++  L+++I   A KF   A   +D+L+D ++   +    +++  ++++++  P+LR  I
Sbjct  353  FKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREYI  412

Query  436  VDRLVSTLSEVRAGKVYRGVLWVVGEYSLEEKDIREAWKRIRSSLGEIPILASEQRLLDE  495
            ++ L   L ++ + +     LW++GEY  E      +   +  S+ E+ +L S +     
Sbjct  413  LEHLCELLEDIESPEALAAALWILGEYG-ELIPNGSSPPDLLRSILEVFVLESAKVRAAA  471

Query  496  VPDETALKEQVNGHTKPSAPTGSRKVLADGTYATESALTSE  536
            +      K  +   T P   T +  +    T AT+ +L  E
Sbjct  472  L--TALAKLGL---TSPEETTQNLIIQLLLTLATQDSLDLE  507


>CDD:462245 pfam07718, Coatamer_beta_C, Coatomer beta C-terminal region. 
 This family is found at the C-terminus of the coatamer beta 
subunit proteins (Beta-coat proteins). This C-terminal domain 
probably adapts the function of the N-terminal pfam01602 
domain.
Length=138

 Score = 268 bits (688),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 96/138 (70%), Positives = 108/138 (78%), Gaps = 1/138 (1%)

Query  679  VDDAIPIRQFTKKSGLEGAEEM-ELDLAKATGGDSTVETVASKLSRVVQLTGFSDPVYAE  737
             DD I  RQ   K G  G E   E DL++ATGGD   +  +SKL+++VQLTGFSDPVYAE
Sbjct  1    PDDPISFRQLKGKKGESGEELQFEDDLSQATGGDIAEDDFSSKLNKIVQLTGFSDPVYAE  60

Query  738  AYVTVHQFDIVLDVLLVNQTLETLQNLSVEFATLGDLKVVERPTTHNLGPRDFLNVQATV  797
            AYVTVHQFDIVLDVLLVNQT ETLQNL+VE ATLGDLK+VERP    L P  F N++ATV
Sbjct  61   AYVTVHQFDIVLDVLLVNQTSETLQNLTVELATLGDLKLVERPQPVTLAPHGFHNIKATV  120

Query  798  KVSSTDTGVIFGNIVYDG  815
            KVSST+TGVIFGNIVYDG
Sbjct  121  KVSSTETGVIFGNIVYDG  138


>CDD:434227 pfam14806, Coatomer_b_Cpla, Coatomer beta subunit appendage platform. 
 This family is found at the C-terminus of the coatamer 
beta subunit proteins (Beta-coat proteins). It is a platform 
domain on the appendage that carries a highly conserved 
tryptophan.
Length=128

 Score = 175 bits (445),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 58/91 (64%), Positives = 71/91 (78%), Gaps = 0/91 (0%)

Query  820  ETHVVILNDIHADIMDYIQPAHCTETQFRTMWTEFEWENKVNINSKAKSLREFLKQLMES  879
            + + VILNDIH DIMDYI+PA C + +FR MW EFEWENK+ +N+    LRE+L  LM+ 
Sbjct  1    DRNCVILNDIHIDIMDYIKPATCDDEEFREMWAEFEWENKITVNTNITDLREYLDHLMKK  60

Query  880  TNMACLTPEASLKGDCRFLSANLYARSVFGE  910
            TNM CLTPE +L G+C FLSANLYARS+FGE
Sbjct  61   TNMNCLTPEEALSGECGFLSANLYARSIFGE  91



Lambda      K        H        a         alpha
   0.318    0.132    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1211573816


Query= TCONS_00001840

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425868 pfam00781, DAGK_cat, Diacylglycerol kinase catalytic d...  115     2e-31


>CDD:425868 pfam00781, DAGK_cat, Diacylglycerol kinase catalytic domain. 
 Diacylglycerol (DAG) is a second messenger that acts as a protein 
kinase C activator. The catalytic domain is assumed from 
the finding of bacterial homologs. YegS is the Escherichia 
coli protein in this family whose crystal structure reveals 
an active site in the inter-domain cleft formed by four conserved 
sequence motifs, revealing a novel metal-binding site. 
The residues of this site are conserved across the family.
Length=125

 Score = 115 bits (290),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 46/132 (35%), Positives = 63/132 (48%), Gaps = 7/132 (5%)

Query  121  RFKVLINPFGGKGIASRLYHQYAAPILAAAHCVVEVEETTHGGHATEIAEQIDIDAYDAI  180
            +  V++NP  G G   +L  +   P+L  A   VE+  T   G A E+A +   D YD I
Sbjct  1    KLLVIVNPKSGGGKGKKLL-RKVRPLLNKAGVEVELVLTEGPGDALELAREAAEDGYDRI  59

Query  181  VCCSGDGLPYEVFNGLAKKPNAREALSKLAVAMIPGGSGNAMAWNLCGTGSVSVAALAIV  240
            V   GDG   EV NGLA         ++  + +IP G+GN  A  L   G    A  AI+
Sbjct  60   VVAGGDGTVNEVLNGLA------GLATRPPLGIIPLGTGNDFARALGIPGDPEEALEAIL  113

Query  241  KGVRTPIDLVSV  252
            KG   P+D+  V
Sbjct  114  KGQTRPVDVGKV  125



Lambda      K        H        a         alpha
   0.317    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00001842

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00001843

Length=626
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  81.0    1e-17


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 81.0 bits (200),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 93/235 (40%), Gaps = 22/235 (9%)

Query  150  IDDYFSLYHPAYPILHEGTFRARVSGALAKPRDGSWPLLYNTVAAIGAFVGGTKATNCDI  209
            +D +F  +HP +PILH  +F        + P + + PLL   + A+GA    +       
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  210  PLYKEACKHLT-----------MDVLEKGSLSYVQAIVLMANYLQKRNKPNAGFILIGIG  258
             L  EA   +                   SL  +QA++L+  Y          +   G+ 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGLA  120

Query  259  WSMALAIGLHREFGM----PNTSPFIMEIRRRVWWTLYTFVSSSQLTLGRPP---VSLVG  311
              +A ++GLHR+               E+RRR++W  +       L LGRPP    S + 
Sbjct  121  IRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDID  180

Query  312  VNIRPPANLDDLDLAVDMEQ--LPPCKTGPTITSALIAQAKLAKIANAVQVELLT  364
            + +  P + DDL  +   ++  LP            +   KL+KI + +   LL+
Sbjct  181  LPL--PCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLS  233



Lambda      K        H        a         alpha
   0.319    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 786063070


Query= TCONS_00001844

Length=795
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  80.2    4e-17


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 80.2 bits (198),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 93/235 (40%), Gaps = 22/235 (9%)

Query  319  IDDYFSLYHPAYPILHEGTFRARVSGALAKPRDGSWPLLYNTVAAIGAFVGGTKATNCDI  378
            +D +F  +HP +PILH  +F        + P + + PLL   + A+GA    +       
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  379  PLYKEACKHLT-----------MDVLEKGSLSYVQAIVLMANYLQKRNKPNAGFILIGIG  427
             L  EA   +                   SL  +QA++L+  Y          +   G+ 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGLA  120

Query  428  WSMALAIGLHREFGM----PNTSPFIMEIRRRVWWTLYTFVSSSQLTLGRPP---VSLVG  480
              +A ++GLHR+               E+RRR++W  +       L LGRPP    S + 
Sbjct  121  IRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDID  180

Query  481  VNIRPPANLDDLDLAVDMEQ--LPPCKTGPTITSALIAQAKLAKIANAVQVELLT  533
            + +  P + DDL  +   ++  LP            +   KL+KI + +   LL+
Sbjct  181  LPL--PCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLS  233



Lambda      K        H        a         alpha
   0.320    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1020061552


Query= TCONS_00007370

Length=406


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0629    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00001845

Length=406


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00001846

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  80.2    3e-17


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 80.2 bits (198),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 93/235 (40%), Gaps = 22/235 (9%)

Query  218  IDDYFSLYHPAYPILHEGTFRARVSGALAKPRDGSWPLLYNTVAAIGAFVGGTKATNCDI  277
            +D +F  +HP +PILH  +F        + P + + PLL   + A+GA    +       
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  278  PLYKEACKHLT-----------MDVLEKGSLSYVQAIVLMANYLQKRNKPNAGFILIGIG  326
             L  EA   +                   SL  +QA++L+  Y          +   G+ 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGLA  120

Query  327  WSMALAIGLHREFGM----PNTSPFIMEIRRRVWWTLYTFVSSSQLTLGRPP---VSLVG  379
              +A ++GLHR+               E+RRR++W  +       L LGRPP    S + 
Sbjct  121  IRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDID  180

Query  380  VNIRPPANLDDLDLAVDMEQ--LPPCKTGPTITSALIAQAKLAKIANAVQVELLT  432
            + +  P + DDL  +   ++  LP            +   KL+KI + +   LL+
Sbjct  181  LPL--PCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLS  233



Lambda      K        H        a         alpha
   0.321    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 796386600


Query= TCONS_00001847

Length=256
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  175     4e-55
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  154     2e-47


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 175 bits (446),  Expect = 4e-55, Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 119/231 (52%), Gaps = 12/231 (5%)

Query  28   VRSLSKEGAKVSFNYVSASSKAAADALVQELRNENKEALAIQADMTDIDAPSRIVQATLA  87
             R+L++EGA+V    ++ +     + L +EL      A  +  D+TD +    +V A + 
Sbjct  13   ARALAEEGAEVVLTDLNEALAKRVEELAEEL-----GAAVLPCDVTDEEQVEALVAAAVE  67

Query  88   EFKTEQIDILVNNAGAGDN--RPLEEVTVDVYQNLMDVNVRAVIFMTKAILSYIPRNGRI  145
            +F   ++DILVNNAG       P  + + + +   +DVN+ ++  + KA L  +   G I
Sbjct  68   KF--GRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLMKEGGSI  125

Query  146  INLSSISARGGYATQSVYAATKAAVEGLTRVWATELGHKYGVTVNAINPGPVNTDMYRAA  205
            +NLSSI A       + Y A KAA+E LTR  A ELG   G+ VNAI+PGP+ T      
Sbjct  126  VNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELG-PRGIRVNAISPGPIKTLAASGI  184

Query  206  GPVHLARMEEQNKKVPAGQRCGTVDDIADIVTFLAQERSRWVTGDVICANG  256
                   +     + P G R GT +++A+   FLA + + ++TG V+  +G
Sbjct  185  PGFD-ELLAAAEARAPLG-RLGTPEEVANAAAFLASDLASYITGQVLYVDG  233


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 154 bits (392),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 76/192 (40%), Positives = 114/192 (59%), Gaps = 8/192 (4%)

Query  12   KVAIVTGGARGIGAGIVRSLSKEGAKVSFNYVSASSKAAADALVQELRNENKEALAIQAD  71
            KVA+VTG + GIG  I + L+KEGAKV    +   S+   +A+ +EL     +AL IQ D
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKV---VLVDRSEEKLEAVAKELGALGGKALFIQGD  57

Query  72   MTDIDAPSRIVQATLAEFKTEQIDILVNNAGAGDNRPLEEVTVDVYQNLMDVNVRAVIFM  131
            +TD      +V+  +       +DILVNNAG     P  E++ + ++ ++DVN+  V  +
Sbjct  58   VTDRAQVKALVEQAVERLGR--LDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNL  115

Query  132  TKAILSYIPR--NGRIINLSSISARGGYATQSVYAATKAAVEGLTRVWATELGHKYGVTV  189
            T+A+L  + +   GRI+N+SS++    Y   S Y+A+KAAV G TR  A EL   +G+ V
Sbjct  116  TRAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELA-PHGIRV  174

Query  190  NAINPGPVNTDM  201
            NA+ PG V+TDM
Sbjct  175  NAVAPGGVDTDM  186



Lambda      K        H        a         alpha
   0.316    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00007371

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  106     3e-29
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          73.8    8e-17


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 106 bits (267),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 38/94 (40%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query  20   VHYWQHGRIGRYAVNRPIVLGHESSGVIVACGSNVDGLKVGDRVALEPGISCNTCKYCRS  79
            +H ++ G      V  P++LGHE +G +V  G  V GLKVGDRV +EP I C  C+YCR 
Sbjct  17   LHIYKGGN---PPVKLPLILGHEFAGEVVEVGPGVTGLKVGDRVVVEPLIPCGKCEYCRE  73

Query  80   GHYNLCKSMVFAATPPYDGTLSTFYKVPAECCYK  113
            G YNLC +  F      DG  + +  VP      
Sbjct  74   GRYNLCPNGRFLGY-DRDGGFAEYVVVPERNLVP  106


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 73.8 bits (182),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 39/132 (30%), Positives = 58/132 (44%), Gaps = 3/132 (2%)

Query  154  PVGLLCCSVASAFGAAKVVAVDVVKTRLATATKYGATHRYEMDAEKKNAEELSATAALED  213
             VGL    +A A GA  +      + +L  A + GA H    + ++ +  E         
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEE-KLELAKELGADHVI--NPKETDLVEEIKELTGGK  57

Query  214  GADIILDATGAEPCLNCGLDILRSGGTFVQVGLGNPTLMFPVGQVCDKEVVFKGSFRYGP  273
            G D++ D  G+   L   L +LR GG  V VGL    L  P+  +  KE+   GSF   P
Sbjct  58   GVDVVFDCVGSPATLEQALKLLRPGGRVVVVGLPGGPLPLPLAPLLLKELTILGSFLGSP  117

Query  274  GDYALAIGLLES  285
             ++  A+ LL S
Sbjct  118  EEFPEALDLLAS  129



Lambda      K        H        a         alpha
   0.323    0.138    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00001848

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  135     8e-40
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          75.0    5e-17


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 135 bits (342),  Expect = 8e-40, Method: Composition-based stats.
 Identities = 47/109 (43%), Positives = 63/109 (58%), Gaps = 4/109 (4%)

Query  54   DVIVRVVATGLCGSDVHYWQHGRIGRYAVNRPIVLGHESSGVIVACGSNVDGLKVGDRVA  113
            +V+V+V A G+CGSD+H ++ G      V  P++LGHE +G +V  G  V GLKVGDRV 
Sbjct  2    EVLVKVKAAGICGSDLHIYKGGN---PPVKLPLILGHEFAGEVVEVGPGVTGLKVGDRVV  58

Query  114  LEPGISCNTCKYCRSGHYNLCKSMVFAATPPYDGTLSTFYKVPAECCYK  162
            +EP I C  C+YCR G YNLC +  F      DG  + +  VP      
Sbjct  59   VEPLIPCGKCEYCREGRYNLCPNGRFLGY-DRDGGFAEYVVVPERNLVP  106


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 75.0 bits (185),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 39/132 (30%), Positives = 58/132 (44%), Gaps = 3/132 (2%)

Query  203  PVGLLCCSVASAFGAAKVVAVDVVKTRLATATKYGATHRYEMDAEKKNAEELSATAALED  262
             VGL    +A A GA  +      + +L  A + GA H    + ++ +  E         
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEE-KLELAKELGADHVI--NPKETDLVEEIKELTGGK  57

Query  263  GADIILDATGAEPCLNCGLDILRSGGTFVQVGLGNPTLMFPVGQVCDKEVVFKGSFRYGP  322
            G D++ D  G+   L   L +LR GG  V VGL    L  P+  +  KE+   GSF   P
Sbjct  58   GVDVVFDCVGSPATLEQALKLLRPGGRVVVVGLPGGPLPLPLAPLLLKELTILGSFLGSP  117

Query  323  GDYALAIGLLES  334
             ++  A+ LL S
Sbjct  118  EEFPEALDLLAS  129



Lambda      K        H        a         alpha
   0.321    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00001849

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00007372

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         162     4e-47


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 162 bits (411),  Expect = 4e-47, Method: Composition-based stats.
 Identities = 93/269 (35%), Positives = 136/269 (51%), Gaps = 20/269 (7%)

Query  30   LFGYDQGVFSGVVVTPDFLELHDLVGPTRTKILSTV-----TAIYDVGCFLGAILAFTLG  84
            LFGYD GV    +   DF +   L     +    +V      +I+ VGCF+G++ A  LG
Sbjct  11   LFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLG  70

Query  85   ERLGRKKSILLGTTIMAVGTVLQASSFRLP---QMFVGRVILGVGNGVNTATAPIWQTET  141
            +R GRKKS+L+   +  +G VLQ ++       Q+ VGRV++G+G G  +  AP++ +E 
Sbjct  71   DRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEI  130

Query  142  AQMKWRGKLVIL-ELGLNVGGYCIVNWINYGLSFRGGSIAWRLPIALQLFFICALFATVP  200
            A  K RG L  L +L +  G   +      GL+    S  WR+P+ LQL     L   + 
Sbjct  131  APKKLRGALGSLYQLAITFGIL-LAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLL  189

Query  201  WLPESPRWLLAHGRKEEGVEVLSCIEAKPIDDAYIITQHDEIQYSIQYERDNAIRWRDLL  260
            +LPESPRWL+  GR EE  EVL+ +   P  D  +    D ++   + E+     W++L 
Sbjct  190  FLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAEK---ASWKELF  246

Query  261  RGGKSEGTKTLR-RLLLGAGTQAIQQFQG  288
                   TKT R RLL+G   Q  QQ  G
Sbjct  247  S------TKTRRQRLLIGVMLQIFQQLTG  269



Lambda      K        H        a         alpha
   0.326    0.142    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00001850

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         231     8e-72


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 231 bits (590),  Expect = 8e-72, Method: Composition-based stats.
 Identities = 135/401 (34%), Positives = 207/401 (52%), Gaps = 24/401 (6%)

Query  30   LFGYDQGVFSGVVVTPDFLELHDLVGPTRTKILSTV-----TAIYDVGCFLGAILAFTLG  84
            LFGYD GV    +   DF +   L     +    +V      +I+ VGCF+G++ A  LG
Sbjct  11   LFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLG  70

Query  85   ERLGRKKSILLGTTIMAVGTVLQASSFRLP---QMFVGRVILGVGNGVNTATAPIWQTET  141
            +R GRKKS+L+   +  +G VLQ ++       Q+ VGRV++G+G G  +  AP++ +E 
Sbjct  71   DRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEI  130

Query  142  AQMKWRGKLVIL-ELGLNVGGYCIVNWINYGLSFRGGSIAWRLPIALQLFFICALFATVP  200
            A  K RG L  L +L +  G   +      GL+    S  WR+P+ LQL     L   + 
Sbjct  131  APKKLRGALGSLYQLAITFGIL-LAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLL  189

Query  201  WLPESPRWLLAHGRKEEGVEVLSCIEAKPIDDAYIITQHDEIQYSIQYERDNAIRWRDLL  260
            +LPESPRWL+  GR EE  EVL+ +   P  D  +    D ++   + E+     W++L 
Sbjct  190  FLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAEK---ASWKELF  246

Query  261  RGGKSEGTKTLR-RLLLGAGTQAIQQFQGINIMSYYLPLVLINSVGLSNSMARLLTACNA  319
                   TKT R RLL+G   Q  QQ  GIN + YY    +  ++GLS+S   L+T    
Sbjct  247  S------TKTRRQRLLIGVMLQIFQQLTGINAIFYYST-TIFENLGLSDSF--LVTIIVG  297

Query  320  ISYFIFSCVIATMVERLGRRGLMLLSGFGQFLSFLVITILLCFAENN-KVYGTASVAFFF  378
            +  F+F+ +   +V+R GRR L+LL   G  + F+++ I+     +     G  ++ F  
Sbjct  298  VVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIVFIA  357

Query  379  LYHIAFGVGMLGVPWLYPTEINSLPMRTKGAAVATATNWLV  419
            L+   F +G   VPW+  +E+  L +R+K  A+ATA NWL 
Sbjct  358  LFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLA  398



Lambda      K        H        a         alpha
   0.327    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00007373

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         284     2e-91


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 284 bits (729),  Expect = 2e-91, Method: Composition-based stats.
 Identities = 152/452 (34%), Positives = 235/452 (52%), Gaps = 25/452 (6%)

Query  3    LFGYDQGVFSRFHLTPDFLELHDLVGPTRTKILSTV-----TAIYDVGCFLGAILAFTLG  57
            LFGYD GV   F    DF +   L     +    +V      +I+ VGCF+G++ A  LG
Sbjct  11   LFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLG  70

Query  58   ERLGRKKSILLGTTIMAVGTVLQASSFRLP---QMFVGRVILGVGNGVNTATAPIWQTET  114
            +R GRKKS+L+   +  +G VLQ ++       Q+ VGRV++G+G G  +  AP++ +E 
Sbjct  71   DRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEI  130

Query  115  AQMKWRGKLVIL-ELGLNVGGYCIVNWINYGLSFRGGSIAWRLPIALQLFFICALFATVP  173
            A  K RG L  L +L +  G   +      GL+    S  WR+P+ LQL     L   + 
Sbjct  131  APKKLRGALGSLYQLAITFGIL-LAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLL  189

Query  174  WLPESPRWLLAHGRKEEGVEVLSCIEAKPIDDAYIITQHDEIQYSIQYERDNAIRWRDLL  233
            +LPESPRWL+  GR EE  EVL+ +   P  D  +    D ++   + E+     W++L 
Sbjct  190  FLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAEK---ASWKELF  246

Query  234  RGGKSEGTKTLR-RLLLGAGTQAIQQFQGINIMSYYLPLVLINSVGLSNSMARLLTACNA  292
                   TKT R RLL+G   Q  QQ  GIN + YY    +  ++GLS+S   L+T    
Sbjct  247  S------TKTRRQRLLIGVMLQIFQQLTGINAIFYYST-TIFENLGLSDSF--LVTIIVG  297

Query  293  ISYFIFSCVIATMVERLGRRGLMLLSGFGQFLSFLVITILLCFAENN-KVYGTASVAFFF  351
            +  F+F+ +   +V+R GRR L+LL   G  + F+++ I+     +     G  ++ F  
Sbjct  298  VVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIVFIA  357

Query  352  LYHIAFGVGMLGVPWLYPTEINSLPMRTKGAAVATATNWITNFAIVEITPIGIQNLGW-K  410
            L+   F +G   VPW+  +E+  L +R+K  A+ATA NW+ NF I  + PI    +G   
Sbjct  358  LFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGY  417

Query  411  FWIVWTVLNAVFLPVIYFLYPETANRTLEDVD  442
             + ++  L  +F+  ++F  PET  RTLE++D
Sbjct  418  TFFIFAGLLVLFIIFVFFFVPETKGRTLEEID  449



Lambda      K        H        a         alpha
   0.326    0.141    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 617738928


Query= TCONS_00001853

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         162     4e-47


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 162 bits (411),  Expect = 4e-47, Method: Composition-based stats.
 Identities = 93/269 (35%), Positives = 136/269 (51%), Gaps = 20/269 (7%)

Query  30   LFGYDQGVFSGVVVTPDFLELHDLVGPTRTKILSTV-----TAIYDVGCFLGAILAFTLG  84
            LFGYD GV    +   DF +   L     +    +V      +I+ VGCF+G++ A  LG
Sbjct  11   LFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLG  70

Query  85   ERLGRKKSILLGTTIMAVGTVLQASSFRLP---QMFVGRVILGVGNGVNTATAPIWQTET  141
            +R GRKKS+L+   +  +G VLQ ++       Q+ VGRV++G+G G  +  AP++ +E 
Sbjct  71   DRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEI  130

Query  142  AQMKWRGKLVIL-ELGLNVGGYCIVNWINYGLSFRGGSIAWRLPIALQLFFICALFATVP  200
            A  K RG L  L +L +  G   +      GL+    S  WR+P+ LQL     L   + 
Sbjct  131  APKKLRGALGSLYQLAITFGIL-LAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLL  189

Query  201  WLPESPRWLLAHGRKEEGVEVLSCIEAKPIDDAYIITQHDEIQYSIQYERDNAIRWRDLL  260
            +LPESPRWL+  GR EE  EVL+ +   P  D  +    D ++   + E+     W++L 
Sbjct  190  FLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAEK---ASWKELF  246

Query  261  RGGKSEGTKTLR-RLLLGAGTQAIQQFQG  288
                   TKT R RLL+G   Q  QQ  G
Sbjct  247  S------TKTRRQRLLIGVMLQIFQQLTG  269



Lambda      K        H        a         alpha
   0.326    0.142    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00001851

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         212     2e-65


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 212 bits (543),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 108/329 (33%), Positives = 168/329 (51%), Gaps = 17/329 (5%)

Query  2    KWRGKLVIL-ELGLNVGGYCIVNWINYGLSFRGGSIAWRLPIALQLFFICALFATVPWLP  60
            K RG L  L +L +  G   +      GL+    S  WR+P+ LQL     L   + +LP
Sbjct  134  KLRGALGSLYQLAITFGIL-LAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLLFLP  192

Query  61   ESPRWLLAHGRKEEGVEVLSCIEAKPIDDAYIITQHDEIQYSIQYERDNAIRWRDLLRGG  120
            ESPRWL+  GR EE  EVL+ +   P  D  +    D ++   + E+     W++L    
Sbjct  193  ESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAEK---ASWKELFS--  247

Query  121  KSEGTKTLR-RLLLGAGTQAIQQFQGINIMSYYLPLVLINSVGLSNSMARLLTACNAISY  179
                TKT R RLL+G   Q  QQ  GIN + YY    +  ++GLS+S   L+T    +  
Sbjct  248  ----TKTRRQRLLIGVMLQIFQQLTGINAIFYYST-TIFENLGLSDSF--LVTIIVGVVN  300

Query  180  FIFSCVIATMVERLGRRGLMLLSGFGQFLSFLVITILLCFAENN-KVYGTASVAFFFLYH  238
            F+F+ +   +V+R GRR L+LL   G  + F+++ I+     +     G  ++ F  L+ 
Sbjct  301  FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIVFIALFI  360

Query  239  IAFGVGMLGVPWLYPTEINSLPMRTKGAAVATATNWITNFAIVEITPIGIQNLGW-KFWI  297
              F +G   VPW+  +E+  L +R+K  A+ATA NW+ NF I  + PI    +G    + 
Sbjct  361  AFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFF  420

Query  298  VWTVLNAVFLPVIYFLYPETANRTLEDVD  326
            ++  L  +F+  ++F  PET  RTLE++D
Sbjct  421  IFAGLLVLFIIFVFFFVPETKGRTLEEID  449



Lambda      K        H        a         alpha
   0.325    0.141    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00001852

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         259     5e-82


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 259 bits (663),  Expect = 5e-82, Method: Composition-based stats.
 Identities = 146/443 (33%), Positives = 228/443 (51%), Gaps = 25/443 (6%)

Query  30   LFGYDQGVFSGVVVTPDFLELHDLVGPTRTKILSTV-----TAIYDVGCFLGAILAFTLG  84
            LFGYD GV    +   DF +   L     +    +V      +I+ VGCF+G++ A  LG
Sbjct  11   LFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLG  70

Query  85   ERLGRKKSILLGTTIMAVGTVLQASSFRLP---QMFVGRVILGVGNGVNTATAPIWQTET  141
            +R GRKKS+L+   +  +G VLQ ++       Q+ VGRV++G+G G  +  AP++ +E 
Sbjct  71   DRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEI  130

Query  142  AQMKWRGKLVIL-ELGLNVGGYCIVNWINYGLSFRGGSIAWRLPIALQLFFICALFATVP  200
            A  K RG L  L +L +  G   +      GL+    S  WR+P+ LQL     L   + 
Sbjct  131  APKKLRGALGSLYQLAITFGIL-LAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLL  189

Query  201  WLPESPRWLLAHGRKEEGVEVLSCIEAKPIDDAYIITQHDEIQYSIQYERDNAIRWRDLL  260
            +LPESPRWL+  GR EE  EVL+ +   P  D  +    D ++   + E+     W++L 
Sbjct  190  FLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAEK---ASWKELF  246

Query  261  RGGKSEGTKTLR-RLLLGAGTQAIQQFQGINIMSYYLPLVLINSVGLSNSMARLLTACNA  319
                   TKT R RLL+G   Q  QQ  GIN + YY    +  ++GLS+S   L+T    
Sbjct  247  S------TKTRRQRLLIGVMLQIFQQLTGINAIFYYST-TIFENLGLSDSF--LVTIIVG  297

Query  320  ISYFIFSCVIATMVERLGRRGLMLLSGFGQFLSFLVITILLCFAENN-KVYGTASVAFFF  378
            +  F+F+ +   +V+R GRR L+LL   G  + F+++ I+     +     G  ++ F  
Sbjct  298  VVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIVFIA  357

Query  379  LYHIAFGVGMLGVPWLYPTEINSLPMRTKGAAVATATNWITNFAIVEITPIGIQNLGW-K  437
            L+   F +G   VPW+  +E+  L +R+K  A+ATA NW+ NF I  + PI    +G   
Sbjct  358  LFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGY  417

Query  438  FWIVWTVLNAVFLPVIYFLYPET  460
             + ++  L  +F+  ++F  PET
Sbjct  418  TFFIFAGLLVLFIIFVFFFVPET  440



Lambda      K        H        a         alpha
   0.327    0.142    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00001854

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         164     3e-48


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 164 bits (417),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 93/269 (35%), Positives = 136/269 (51%), Gaps = 20/269 (7%)

Query  3    LFGYDQGVFSGVVVTPDFLELHDLVGPTRTKILSTV-----TAIYDVGCFLGAILAFTLG  57
            LFGYD GV    +   DF +   L     +    +V      +I+ VGCF+G++ A  LG
Sbjct  11   LFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLG  70

Query  58   ERLGRKKSILLGTTIMAVGTVLQASSFRLP---QMFVGRVILGVGNGVNTATAPIWQTET  114
            +R GRKKS+L+   +  +G VLQ ++       Q+ VGRV++G+G G  +  AP++ +E 
Sbjct  71   DRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEI  130

Query  115  AQMKWRGKLVIL-ELGLNVGGYCIVNWINYGLSFRGGSIAWRLPIALQLFFICALFATVP  173
            A  K RG L  L +L +  G   +      GL+    S  WR+P+ LQL     L   + 
Sbjct  131  APKKLRGALGSLYQLAITFGIL-LAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLL  189

Query  174  WLPESPRWLLAHGRKEEGVEVLSCIEAKPIDDAYIITQHDEIQYSIQYERDNAIRWRDLL  233
            +LPESPRWL+  GR EE  EVL+ +   P  D  +    D ++   + E+     W++L 
Sbjct  190  FLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAEK---ASWKELF  246

Query  234  RGGKSEGTKTLR-RLLLGAGTQAIQQFQG  261
                   TKT R RLL+G   Q  QQ  G
Sbjct  247  S------TKTRRQRLLIGVMLQIFQQLTG  269



Lambda      K        H        a         alpha
   0.326    0.142    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00007374

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         164     1e-47


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 164 bits (417),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 91/326 (28%), Positives = 136/326 (42%), Gaps = 75/326 (23%)

Query  2    KWRGKLVIL-ELGLNVGGYCIVNWINYGLSFRGGSIAWRLPIALQLFFICALFATVPWLP  60
            K RG L  L +L +  G   +      GL+    S  WR+P+ LQL     L   + +LP
Sbjct  134  KLRGALGSLYQLAITFGIL-LAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLLFLP  192

Query  61   ESPRWLLAHGRKEEGVEVLSCIEAKPIDDAYIITQHDEIQYSIQYERDNAIRWRDLLRGG  120
            ESPRWL+  GR EE  EVL+ +   P  D  +    D ++   + E+     W++L    
Sbjct  193  ESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAEK---ASWKELFS--  247

Query  121  KSEGTKTLR-RLLLGAGTQAIQQFQGINIMSYYLP-------------------------  154
                TKT R RLL+G   Q  QQ  GIN + YY                           
Sbjct  248  ----TKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTIIVGVVNFVF  303

Query  155  ---------------LVLI----------------------NSVYGTASVAFFFLYHIAF  177
                           L+L+                      +   G  ++ F  L+   F
Sbjct  304  TFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIVFIALFIAFF  363

Query  178  GVGMLGVPWLYPTEINSLPMRTKGAAVATATNWITNFAIVEITPIGIQNLGW-KFWIVWT  236
             +G   VPW+  +E+  L +R+K  A+ATA NW+ NF I  + PI    +G    + ++ 
Sbjct  364  AMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFA  423

Query  237  VLNAVFLPVIYFLYPETANRTLEDVD  262
             L  +F+  ++F  PET  RTLE++D
Sbjct  424  GLLVLFIIFVFFFVPETKGRTLEEID  449



Lambda      K        H        a         alpha
   0.324    0.141    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00001855

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         284     5e-91


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 284 bits (728),  Expect = 5e-91, Method: Composition-based stats.
 Identities = 151/452 (33%), Positives = 235/452 (52%), Gaps = 25/452 (6%)

Query  30   LFGYDQGVFSGVVVTPDFLELHDLVGPTRTKILSTV-----TAIYDVGCFLGAILAFTLG  84
            LFGYD GV    +   DF +   L     +    +V      +I+ VGCF+G++ A  LG
Sbjct  11   LFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLG  70

Query  85   ERLGRKKSILLGTTIMAVGTVLQASSFRLP---QMFVGRVILGVGNGVNTATAPIWQTET  141
            +R GRKKS+L+   +  +G VLQ ++       Q+ VGRV++G+G G  +  AP++ +E 
Sbjct  71   DRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEI  130

Query  142  AQMKWRGKLVIL-ELGLNVGGYCIVNWINYGLSFRGGSIAWRLPIALQLFFICALFATVP  200
            A  K RG L  L +L +  G   +      GL+    S  WR+P+ LQL     L   + 
Sbjct  131  APKKLRGALGSLYQLAITFGIL-LAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLL  189

Query  201  WLPESPRWLLAHGRKEEGVEVLSCIEAKPIDDAYIITQHDEIQYSIQYERDNAIRWRDLL  260
            +LPESPRWL+  GR EE  EVL+ +   P  D  +    D ++   + E+     W++L 
Sbjct  190  FLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAEK---ASWKELF  246

Query  261  RGGKSEGTKTLR-RLLLGAGTQAIQQFQGINIMSYYLPLVLINSVGLSNSMARLLTACNA  319
                   TKT R RLL+G   Q  QQ  GIN + YY    +  ++GLS+S   L+T    
Sbjct  247  S------TKTRRQRLLIGVMLQIFQQLTGINAIFYYST-TIFENLGLSDSF--LVTIIVG  297

Query  320  ISYFIFSCVIATMVERLGRRGLMLLSGFGQFLSFLVITILLCFAENN-KVYGTASVAFFF  378
            +  F+F+ +   +V+R GRR L+LL   G  + F+++ I+     +     G  ++ F  
Sbjct  298  VVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIVFIA  357

Query  379  LYHIAFGVGMLGVPWLYPTEINSLPMRTKGAAVATATNWITNFAIVEITPIGIQNLGW-K  437
            L+   F +G   VPW+  +E+  L +R+K  A+ATA NW+ NF I  + PI    +G   
Sbjct  358  LFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGY  417

Query  438  FWIVWTVLNAVFLPVIYFLYPETANRTLEDVD  469
             + ++  L  +F+  ++F  PET  RTLE++D
Sbjct  418  TFFIFAGLLVLFIIFVFFFVPETKGRTLEEID  449



Lambda      K        H        a         alpha
   0.325    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00007375

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         113     2e-30


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 113 bits (285),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 96/178 (54%), Gaps = 5/178 (3%)

Query  3    YYLPLVLINSVGLSNSMARLLTACNAISYFIFSCVIATMVERLGRRGLMLLSGFGQFLSF  62
            YY    +  ++GLS+S   L+T    +  F+F+ +   +V+R GRR L+LL   G  + F
Sbjct  275  YYST-TIFENLGLSDSF--LVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICF  331

Query  63   LVITILLCFAENN-KVYGTASVAFFFLYHIAFGVGMLGVPWLYPTEINSLPMRTKGAAVA  121
            +++ I+     +     G  ++ F  L+   F +G   VPW+  +E+  L +R+K  A+A
Sbjct  332  VILGIVALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALA  391

Query  122  TATNWITNFAIVEITPIGIQNLGW-KFWIVWTVLNAVFLPVIYFLYPETANRTLEDVD  178
            TA NW+ NF I  + PI    +G    + ++  L  +F+  ++F  PET  RTLE++D
Sbjct  392  TAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEID  449



Lambda      K        H        a         alpha
   0.329    0.143    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00001856

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00001858

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  165     2e-49
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            145     2e-41


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 165 bits (419),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 50/227 (22%)

Query  182  WALGKTIGAGSMGKVKLAKNMETGEQVAVKIVPRQSADEHRSSRDTERADRSKEIRTARE  241
            + + + +G+GS G V  AK+ +TG+ VA+K + ++   +             K+    RE
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKK------------KKDKNILRE  48

Query  242  AAIVSLVNHPYICGMRDVVRTTYHWYMLFEYVNGGQMLDYIISHGKLKEKQARKFARQIA  301
              I+  +NHP I  + D      + Y++ EYV GG + D +   G   E++A+   +QI 
Sbjct  49   IKILKKLNHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQIL  108

Query  302  SALDYCHRNSIVHRDLKIENILISKTGDIKIIDFGLSNLFSPRSLLKTFCGSLYFAAPEL  361
              L+                                       S L TF G+ ++ APE+
Sbjct  109  EGLE-------------------------------------SGSSLTTFVGTPWYMAPEV  131

Query  362  LQARQYTGPEVDVWSFGIVLYVLVCGKVPFDDQSMPQLHAKIKKGHV  408
            L    Y GP+VDVWS G +LY L+ GK PF   +  +++  I     
Sbjct  132  LGGNPY-GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPY  177


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 145 bits (368),  Expect = 2e-41, Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 114/235 (49%), Gaps = 27/235 (11%)

Query  184  LGKTIGAGSMGKVKLAK----NMETGEQVAVKIVPRQSADEHRSSRDTERADRSKEIRTA  239
            LG+ +G G+ G+V           T  +VAVK +   + +E R           ++    
Sbjct  3    LGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEER-----------EDFL--  49

Query  240  REAAIVSLVNHPYICGMRDVVRTTYHWYMLFEYVNGGQMLDYIISHG-KLKEKQARKFAR  298
             EA+I+  ++HP I  +  V       Y++ EY+ GG +LD++  H  KL  K     A 
Sbjct  50   EEASIMKKLDHPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMAL  109

Query  299  QIASALDYCHRNSIVHRDLKIENILISKTGDIKIIDFGLS-NLFSPRSLLKTFCGSLYF-  356
            QIA  ++Y    + VHRDL   N L+S+   +KI DFGLS +++      K   G     
Sbjct  110  QIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKR--GGGKLP  167

Query  357  ---AAPELLQARQYTGPEVDVWSFGIVLYVLVC-GKVPFDDQSMPQLHAKIKKGH  407
                APE L+  ++T  + DVWSFG++L+ +   G+ P+   S  ++   ++ G+
Sbjct  168  IKWMAPESLKDGKFT-SKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGY  221



Lambda      K        H        a         alpha
   0.315    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00001859

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            111     2e-31
CDD:459660 pfam00069, Pkinase, Protein kinase domain                  106     8e-30


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 111 bits (281),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 80/146 (55%), Gaps = 6/146 (4%)

Query  12   YMLFEYVNGGQMLDYIISHG-KLKEKQARKFARQIASALDYCHRNSIVHRDLKIENILIS  70
            Y++ EY+ GG +LD++  H  KL  K     A QIA  ++Y    + VHRDL   N L+S
Sbjct  77   YIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLESKNFVHRDLAARNCLVS  136

Query  71   KTGDIKIIDFGLS-NLFSPRSLLKTFCGSLYFA--APELLQARQYTGPEVDVWSFGIVLY  127
            +   +KI DFGLS +++      K   G L     APE L+  ++T  + DVWSFG++L+
Sbjct  137  ENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLKDGKFT-SKSDVWSFGVLLW  195

Query  128  VLVC-GKVPFDDQSMPQLHAKIKKGH  152
             +   G+ P+   S  ++   ++ G+
Sbjct  196  EIFTLGEQPYPGMSNEEVLEFLEDGY  221


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 106 bits (267),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 62/153 (41%), Gaps = 38/153 (25%)

Query  1    MRDVVRTTYHWYMLFEYVNGGQMLDYIISHGKLKEKQARKFARQIASALDYCHRNSIVHR  60
            + D      + Y++ EYV GG + D +   G   E++A+   +QI   L+          
Sbjct  63   LYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE----------  112

Query  61   DLKIENILISKTGDIKIIDFGLSNLFSPRSLLKTFCGSLYFAAPELLQARQYTGPEVDVW  120
                                         S L TF G+ ++ APE+L    Y GP+VDVW
Sbjct  113  ---------------------------SGSSLTTFVGTPWYMAPEVLGGNPY-GPKVDVW  144

Query  121  SFGIVLYVLVCGKVPFDDQSMPQLHAKIKKGHV  153
            S G +LY L+ GK PF   +  +++  I     
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPY  177



Lambda      K        H        a         alpha
   0.324    0.141    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00001860

Length=1072
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  202     6e-60
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            153     3e-42
CDD:460465 pfam02149, KA1, Kinase associated domain 1                 73.7    5e-17


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 202 bits (517),  Expect = 6e-60, Method: Composition-based stats.
 Identities = 72/267 (27%), Positives = 119/267 (45%), Gaps = 53/267 (20%)

Query  182  WALGKTIGAGSMGKVKLAKNMETGEQVAVKIVPRQSADEHRSSRDTERADRSKEIRTARE  241
            + + + +G+GS G V  AK+ +TG+ VA+K + ++   +             K+    RE
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKK------------KKDKNILRE  48

Query  242  AAIVSLVNHPYICGMRDVVRTTYHWYMLFEYVNGGQMLDYIISHGKLKEKQARKFARQIA  301
              I+  +NHP I  + D      + Y++ EYV GG + D +   G   E++A+   +QI 
Sbjct  49   IKILKKLNHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQIL  108

Query  302  SALDYCHRNSIVHRDLKIENILISKTGDIKIIDFGLSNLFSPRSLLKTFCGSLYFAAPEL  361
              L+                                       S L TF G+ ++ APE+
Sbjct  109  EGLE-------------------------------------SGSSLTTFVGTPWYMAPEV  131

Query  362  LQARQYTGPEVDVWSFGIVLYVLVCGKVPFDDQSMPQLHAKIKKGHV---EYPQGLSAEC  418
            L    Y GP+VDVWS G +LY L+ GK PF   +  +++  I        E P  LS E 
Sbjct  132  LGGNPY-GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEA  190

Query  419  RHIISRMLVTDPKQRASLAEIMNHPWM  445
            + ++ ++L  DP +R +  + + HPW 
Sbjct  191  KDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 153 bits (389),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 75/271 (28%), Positives = 129/271 (48%), Gaps = 28/271 (10%)

Query  184  LGKTIGAGSMGKVKLAK----NMETGEQVAVKIVPRQSADEHRSSRDTERADRSKEIRTA  239
            LG+ +G G+ G+V           T  +VAVK +   + +E R           ++    
Sbjct  3    LGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEER-----------EDFL--  49

Query  240  REAAIVSLVNHPYICGMRDVVRTTYHWYMLFEYVNGGQMLDYIISHG-KLKEKQARKFAR  298
             EA+I+  ++HP I  +  V       Y++ EY+ GG +LD++  H  KL  K     A 
Sbjct  50   EEASIMKKLDHPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMAL  109

Query  299  QIASALDYCHRNSIVHRDLKIENILISKTGDIKIIDFGLS-NLFSPRSLLKTFCGSLYF-  356
            QIA  ++Y    + VHRDL   N L+S+   +KI DFGLS +++      K   G     
Sbjct  110  QIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKR--GGGKLP  167

Query  357  ---AAPELLQARQYTGPEVDVWSFGIVLYVLVC-GKVPFDDQSMPQLHAKIKKGHV-EYP  411
                APE L+  ++T  + DVWSFG++L+ +   G+ P+   S  ++   ++ G+    P
Sbjct  168  IKWMAPESLKDGKFT-SKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQP  226

Query  412  QGLSAECRHIISRMLVTDPKQRASLAEIMNH  442
            +    E   ++ +    DP+ R + +E++  
Sbjct  227  ENCPDELYDLMKQCWAYDPEDRPTFSELVED  257


>CDD:460465 pfam02149, KA1, Kinase associated domain 1.  
Length=44

 Score = 73.7 bits (182),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 34/44 (77%), Gaps = 0/44 (0%)

Query  1029  VLRFEILIVKVPLFSLHGIQFKKVSGGMWQYREMAKKILDALRL  1072
             V++FEI + K+P  SL+G+ FK++SG  WQY+++A KIL  LRL
Sbjct  1     VVKFEIEVCKLPRLSLYGVDFKRLSGDTWQYKDLASKILSELRL  44



Lambda      K        H        a         alpha
   0.313    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1381894976


Query= TCONS_00001861

Length=817
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  147     8e-41
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            122     9e-32
CDD:460465 pfam02149, KA1, Kinase associated domain 1                 73.7    4e-17


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 147 bits (373),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 52/193 (27%), Positives = 83/193 (43%), Gaps = 41/193 (21%)

Query  1    MRDVVRTTYHWYMLFEYVNGGQMLDYIISHGKLKEKQARKFARQIASALDYCHRNSIVHR  60
            + D      + Y++ EYV GG + D +   G   E++A+   +QI   L+          
Sbjct  63   LYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE----------  112

Query  61   DLKIENILISKTGDIKIIDFGLSNLFSPRSLLKTFCGSLYFAAPELLQARQYTGPEVDVW  120
                                         S L TF G+ ++ APE+L    Y GP+VDVW
Sbjct  113  ---------------------------SGSSLTTFVGTPWYMAPEVLGGNPY-GPKVDVW  144

Query  121  SFGIVLYVLVCGKVPFDDQSMPQLHAKIKKGHV---EYPQGLSAECRHIISRMLVTDPKQ  177
            S G +LY L+ GK PF   +  +++  I        E P  LS E + ++ ++L  DP +
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  178  RASLAEIMNHPWM  190
            R +  + + HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 122 bits (310),  Expect = 9e-32, Method: Composition-based stats.
 Identities = 55/184 (30%), Positives = 94/184 (51%), Gaps = 11/184 (6%)

Query  12   YMLFEYVNGGQMLDYIISHG-KLKEKQARKFARQIASALDYCHRNSIVHRDLKIENILIS  70
            Y++ EY+ GG +LD++  H  KL  K     A QIA  ++Y    + VHRDL   N L+S
Sbjct  77   YIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLESKNFVHRDLAARNCLVS  136

Query  71   KTGDIKIIDFGLS-NLFSPRSLLKTFCGSLYF----AAPELLQARQYTGPEVDVWSFGIV  125
            +   +KI DFGLS +++      K   G         APE L+  ++T  + DVWSFG++
Sbjct  137  ENLVVKISDFGLSRDIYDDDYYRKR--GGGKLPIKWMAPESLKDGKFT-SKSDVWSFGVL  193

Query  126  LYVLVC-GKVPFDDQSMPQLHAKIKKGHV-EYPQGLSAECRHIISRMLVTDPKQRASLAE  183
            L+ +   G+ P+   S  ++   ++ G+    P+    E   ++ +    DP+ R + +E
Sbjct  194  LWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSE  253

Query  184  IMNH  187
            ++  
Sbjct  254  LVED  257


>CDD:460465 pfam02149, KA1, Kinase associated domain 1.  
Length=44

 Score = 73.7 bits (182),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 34/44 (77%), Gaps = 0/44 (0%)

Query  774  VLRFEILIVKVPLFSLHGIQFKKVSGGMWQYREMAKKILDALRL  817
            V++FEI + K+P  SL+G+ FK++SG  WQY+++A KIL  LRL
Sbjct  1    VVKFEIEVCKLPRLSLYGVDFKRLSGDTWQYKDLASKILSELRL  44



Lambda      K        H        a         alpha
   0.315    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1052074896


Query= TCONS_00001864

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461530 pfam05033, Pre-SET, Pre-SET motif. This protein motif ...  56.3    1e-10


>CDD:461530 pfam05033, Pre-SET, Pre-SET motif.  This protein motif is a zinc 
binding motif. It contains 9 conserved cysteines that coordinate 
three zinc ions. It is thought that this region plays 
a structural role in stabilizing SET domains.
Length=99

 Score = 56.3 bits (136),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 34/93 (37%), Gaps = 16/93 (17%)

Query  251  SNFEFVNSYILRKGVSHIPADFIAGCDCKKICDPARCGCLEQDEESKEIIVPYQRAQDDA  310
             +F ++ SYI  K    I      GCDC   C   +C C +      E   PY    D  
Sbjct  23   PDFTYITSYIYPKEFLLIIPQ---GCDCGD-CSSEKCSCAQ--LNGGEFRFPY----DKD  72

Query  311  RLLVLTPDFLKRTDIIIECSSKCTCDERKCWNR  343
             LLV           I EC+  C C    C NR
Sbjct  73   GLLVPESKPP-----IYECNPLCGCP-PSCPNR  99



Lambda      K        H        a         alpha
   0.315    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00007376

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  52.9    3e-11


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 52.9 bits (127),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (56%), Gaps = 4/45 (9%)

Query  1    MNHSCNPNCKLFPVTRTYGDERLYDLAFFSLHNIPPNTELTFDYN  45
            +NHSC+PNC++  V    G      +  F+L +I P  ELT DY 
Sbjct  75   INHSCDPNCEVRVVYVNGGPR----IVIFALRDIKPGEELTIDYG  115



Lambda      K        H        a         alpha
   0.320    0.139    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00001862

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  96.1    2e-24


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 96.1 bits (239),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 7/119 (6%)

Query  362  GFGLRSPDWIRAGQFIDCYLGE-VITKQEADVREEVVTSQHGHSYLFELDFFHNDDEIYV  420
            G GL + + I  G+FI  Y+   +ITK+EAD RE +   +          F  ++D  Y 
Sbjct  1    GRGLFATEDIPKGEFIGEYVEVLLITKEEADKRELLYYDKLELRLWGPYLFTLDEDSEYC  60

Query  421  VDG--QKFGSPTRFMNHSCNPNCKLFPVTRTYGDERLYDLAFFSLHNIPPNTELTFDYN  477
            +D     +G+  RF+NHSC+PNC++  V    G      +  F+L +I P  ELT DY 
Sbjct  61   IDARALYYGNWARFINHSCDPNCEVRVVYVNGGPR----IVIFALRDIKPGEELTIDYG  115



Lambda      K        H        a         alpha
   0.317    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00001863

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  52.9    3e-11


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 52.9 bits (127),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (56%), Gaps = 4/45 (9%)

Query  1    MNHSCNPNCKLFPVTRTYGDERLYDLAFFSLHNIPPNTELTFDYN  45
            +NHSC+PNC++  V    G      +  F+L +I P  ELT DY 
Sbjct  75   INHSCDPNCEVRVVYVNGGPR----IVIFALRDIKPGEELTIDYG  115



Lambda      K        H        a         alpha
   0.320    0.139    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00001865

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  52.9    3e-11


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 52.9 bits (127),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (56%), Gaps = 4/45 (9%)

Query  1    MNHSCNPNCKLFPVTRTYGDERLYDLAFFSLHNIPPNTELTFDYN  45
            +NHSC+PNC++  V    G      +  F+L +I P  ELT DY 
Sbjct  75   INHSCDPNCEVRVVYVNGGPR----IVIFALRDIKPGEELTIDYG  115



Lambda      K        H        a         alpha
   0.320    0.139    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00007377

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  52.9    3e-11


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 52.9 bits (127),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (56%), Gaps = 4/45 (9%)

Query  1    MNHSCNPNCKLFPVTRTYGDERLYDLAFFSLHNIPPNTELTFDYN  45
            +NHSC+PNC++  V    G      +  F+L +I P  ELT DY 
Sbjct  75   INHSCDPNCEVRVVYVNGGPR----IVIFALRDIKPGEELTIDYG  115



Lambda      K        H        a         alpha
   0.320    0.139    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00001866

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  94.1    7e-24


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 94.1 bits (234),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 7/119 (6%)

Query  303  GFGLRSPDWIRAGQFIDCYLGE-VITKQEADVREEVVTSQHGHSYLFELDFFHNDDEIYV  361
            G GL + + I  G+FI  Y+   +ITK+EAD RE +   +          F  ++D  Y 
Sbjct  1    GRGLFATEDIPKGEFIGEYVEVLLITKEEADKRELLYYDKLELRLWGPYLFTLDEDSEYC  60

Query  362  VDG--QKFGSPTRFMNHSCNPNCKLFPVTRTYGDERLYDLAFFSLHNIPPNTELTFDYN  418
            +D     +G+  RF+NHSC+PNC++  V    G      +  F+L +I P  ELT DY 
Sbjct  61   IDARALYYGNWARFINHSCDPNCEVRVVYVNGGPR----IVIFALRDIKPGEELTIDYG  115



Lambda      K        H        a         alpha
   0.319    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00007378

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0711    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00001868

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460089 pfam01159, Ribosomal_L6e, Ribosomal protein L6e            141     2e-44


>CDD:460089 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.  
Length=109

 Score = 141 bits (358),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 62/113 (55%), Positives = 80/113 (71%), Gaps = 6/113 (5%)

Query  89   INGVPLRRVNARYVIATSKRVDISNVDQSVLEKVSASDYFTKEKKAEKKTEE--AFFKQG  146
            +NGVPLRRVN RYVIATS +VDIS V    + +     YF KEKK +KK +    FF++ 
Sbjct  1    VNGVPLRRVNQRYVIATSTKVDISGVK---IPEHINDAYFKKEKKKKKKPKSEEEFFEE-  56

Query  147  EKPEKKVASARASDQKAVDQSILASIKKEAFLGSYLASSFSLRNGDKPHEMKW  199
            +K +K+V+  R +DQKAVD+++LA+IKK   L  YL SSFSLR GD PHEMK+
Sbjct  57   KKEKKEVSEQRKADQKAVDKALLAAIKKVPLLKGYLKSSFSLRKGDYPHEMKF  109



Lambda      K        H        a         alpha
   0.314    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00001869

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460089 pfam01159, Ribosomal_L6e, Ribosomal protein L6e            145     8e-46


>CDD:460089 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.  
Length=109

 Score = 145 bits (368),  Expect = 8e-46, Method: Composition-based stats.
 Identities = 65/114 (57%), Positives = 79/114 (69%), Gaps = 7/114 (6%)

Query  89   INGVPLRRVNARYVIATSKRVDISNVDQSVLEKVSASDYFTKEKKAEKKTEE--AFFKQG  146
            +NGVPLRRVN RYVIATS +VDIS V    + +     YF KEKK +KK +    FF   
Sbjct  1    VNGVPLRRVNQRYVIATSTKVDISGVK---IPEHINDAYFKKEKKKKKKPKSEEEFF--E  55

Query  147  EKPEKKKVASARASDQKAVDQSILASIKKEAFLGSYLASSFSLRNGDKPHEMKW  200
            EK EKK+V+  R +DQKAVD+++LA+IKK   L  YL SSFSLR GD PHEMK+
Sbjct  56   EKKEKKEVSEQRKADQKAVDKALLAAIKKVPLLKGYLKSSFSLRKGDYPHEMKF  109



Lambda      K        H        a         alpha
   0.314    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00001867

Length=283


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00007379

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460089 pfam01159, Ribosomal_L6e, Ribosomal protein L6e            145     8e-46


>CDD:460089 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.  
Length=109

 Score = 145 bits (368),  Expect = 8e-46, Method: Composition-based stats.
 Identities = 65/114 (57%), Positives = 79/114 (69%), Gaps = 7/114 (6%)

Query  89   INGVPLRRVNARYVIATSKRVDISNVDQSVLEKVSASDYFTKEKKAEKKTEE--AFFKQG  146
            +NGVPLRRVN RYVIATS +VDIS V    + +     YF KEKK +KK +    FF   
Sbjct  1    VNGVPLRRVNQRYVIATSTKVDISGVK---IPEHINDAYFKKEKKKKKKPKSEEEFF--E  55

Query  147  EKPEKKKVASARASDQKAVDQSILASIKKEAFLGSYLASSFSLRNGDKPHEMKW  200
            EK EKK+V+  R +DQKAVD+++LA+IKK   L  YL SSFSLR GD PHEMK+
Sbjct  56   EKKEKKEVSEQRKADQKAVDKALLAAIKKVPLLKGYLKSSFSLRKGDYPHEMKF  109



Lambda      K        H        a         alpha
   0.314    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00001871

Length=662
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462775 pfam09368, Sas10, Sas10 C-terminal domain. Sas10 is an...  69.1    3e-15
CDD:461123 pfam04000, Sas10_Utp3, Sas10/Utp3/C1D family. This fam...  58.4    2e-11


>CDD:462775 pfam09368, Sas10, Sas10 C-terminal domain.  Sas10 is an Essential 
subunit of U3-containing Small Subunit (SSU) processome 
complex involved in the production of the 18S rRNA and assembly 
of the small ribosomal subunit.
Length=74

 Score = 69.1 bits (170),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 49/75 (65%), Positives = 58/75 (77%), Gaps = 2/75 (3%)

Query  588  DGKRAITYQIEKNKGLAPKRNKDSRNPRVKKRKKFEEKKKKLGSIRQLYKGGEGPGGYGG  647
            DGKR ITYQIEKNKGL P R K++RNPRVKKR K+E+ KKK  S  ++ +  E  GGYGG
Sbjct  2    DGKRKITYQIEKNKGLTPHRKKENRNPRVKKRYKYEKAKKKRKSQVRVVR--EEGGGYGG  59

Query  648  ELTGIKKNLVKSVKL  662
            E TGIK N+V+SVKL
Sbjct  60   ETTGIKTNVVRSVKL  74


>CDD:461123 pfam04000, Sas10_Utp3, Sas10/Utp3/C1D family.  This family contains 
Utp3 and LCP5 which are components of the U3 ribonucleoprotein 
complex. It also includes the human C1D protein and 
Saccharomyces cerevisiae YHR081W (rrp47), an exosome-associated 
protein required for the 3' processing of stable RNAs, 
and Sas10 which has been identified as a regulator of chromatin 
silencing. This family also includes the human protein 
Neuroguidin an initiation factor 4E (eIF4E) binding protein.
Length=83

 Score = 58.4 bits (142),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 23/97 (24%), Positives = 30/97 (31%), Gaps = 15/97 (15%)

Query  228  FEPLAKDFADLRTKHAELEKAAKAVKAPEDEEAILGPAPAPVIKFRALSAYLGAISMYFM  287
             E L K   +L      L    K VK P  +            K   L AYL  +  Y +
Sbjct  1    LEELKKSLDELEESLEPL---LKKVKNPTSKGLSEELPSLLRAKNHLLLAYLINLLFYLL  57

Query  288  LLSSSQDASGKPCPLPPAQLRAHPVMGSLVKFKKLWE  324
            L  S                  HPV+  LV+ +   E
Sbjct  58   LKLSGVSPKD------------HPVVKELVRLRVYLE  82



Lambda      K        H        a         alpha
   0.305    0.125    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 839155510


Query= TCONS_00001872

Length=662
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462775 pfam09368, Sas10, Sas10 C-terminal domain. Sas10 is an...  69.1    3e-15
CDD:461123 pfam04000, Sas10_Utp3, Sas10/Utp3/C1D family. This fam...  58.4    2e-11


>CDD:462775 pfam09368, Sas10, Sas10 C-terminal domain.  Sas10 is an Essential 
subunit of U3-containing Small Subunit (SSU) processome 
complex involved in the production of the 18S rRNA and assembly 
of the small ribosomal subunit.
Length=74

 Score = 69.1 bits (170),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 49/75 (65%), Positives = 58/75 (77%), Gaps = 2/75 (3%)

Query  588  DGKRAITYQIEKNKGLAPKRNKDSRNPRVKKRKKFEEKKKKLGSIRQLYKGGEGPGGYGG  647
            DGKR ITYQIEKNKGL P R K++RNPRVKKR K+E+ KKK  S  ++ +  E  GGYGG
Sbjct  2    DGKRKITYQIEKNKGLTPHRKKENRNPRVKKRYKYEKAKKKRKSQVRVVR--EEGGGYGG  59

Query  648  ELTGIKKNLVKSVKL  662
            E TGIK N+V+SVKL
Sbjct  60   ETTGIKTNVVRSVKL  74


>CDD:461123 pfam04000, Sas10_Utp3, Sas10/Utp3/C1D family.  This family contains 
Utp3 and LCP5 which are components of the U3 ribonucleoprotein 
complex. It also includes the human C1D protein and 
Saccharomyces cerevisiae YHR081W (rrp47), an exosome-associated 
protein required for the 3' processing of stable RNAs, 
and Sas10 which has been identified as a regulator of chromatin 
silencing. This family also includes the human protein 
Neuroguidin an initiation factor 4E (eIF4E) binding protein.
Length=83

 Score = 58.4 bits (142),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 23/97 (24%), Positives = 30/97 (31%), Gaps = 15/97 (15%)

Query  228  FEPLAKDFADLRTKHAELEKAAKAVKAPEDEEAILGPAPAPVIKFRALSAYLGAISMYFM  287
             E L K   +L      L    K VK P  +            K   L AYL  +  Y +
Sbjct  1    LEELKKSLDELEESLEPL---LKKVKNPTSKGLSEELPSLLRAKNHLLLAYLINLLFYLL  57

Query  288  LLSSSQDASGKPCPLPPAQLRAHPVMGSLVKFKKLWE  324
            L  S                  HPV+  LV+ +   E
Sbjct  58   LKLSGVSPKD------------HPVVKELVRLRVYLE  82



Lambda      K        H        a         alpha
   0.305    0.125    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 839155510


Query= TCONS_00007380

Length=797
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This P...  245     2e-77
CDD:465544 pfam17871, AAA_lid_9, AAA lid domain. This entry repre...  156     1e-45
CDD:463090 pfam10431, ClpB_D2-small, C-terminal, D2-small domain,...  108     5e-29
CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily...  60.8    2e-11


>CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily).  This Pfam entry 
includes some of the AAA proteins not detected by the pfam00004 
model.
Length=168

 Score = 245 bits (627),  Expect = 2e-77, Method: Composition-based stats.
 Identities = 91/173 (53%), Positives = 124/173 (72%), Gaps = 6/173 (3%)

Query  517  RPLASFMFLGPTGVGKTELCKRMAEFLFSTETAVLRFDMSEFQEKHTISRLIGSPAGYVG  576
            RP+ SF+FLGPTGVGKTEL K +AE LF  E A++R DMSE+ E+H++SRLIG+P GYVG
Sbjct  1    RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVG  60

Query  577  YDDAGQLTEAVRRKPYAVLLFDEFEKAHRDISALLLQVLDEGFLTDSQGHKVDFRNTLIV  636
            Y++ GQLTEAVRRKPY+++L DE EKAH  +   LLQ+L+ G LTD QG  VDF+NTL +
Sbjct  61   YEEGGQLTEAVRRKPYSIVLIDEIEKAHPGVQNDLLQILEGGTLTDKQGRTVDFKNTLFI  120

Query  637  LTSNLGADILVGANPLHSFKDYGNAELSPDIKQAVMEVVQSAYPPEFLNRIDE  689
            +T N G++ +  A+ L    DY        +K+ VM++++  + PEFL R+  
Sbjct  121  MTGNFGSEKISDASRLGDSPDY------ELLKEEVMDLLKKGFIPEFLGRLPI  167


>CDD:465544 pfam17871, AAA_lid_9, AAA lid domain.  This entry represents 
the alpha helical AAA+ lid domain that is found to the C-terminus 
of AAA domains.
Length=104

 Score = 156 bits (397),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 60/104 (58%), Positives = 76/104 (73%), Gaps = 0/104 (0%)

Query  262  SVAATISILRGIKNKYEVHHGVRITDAALVAAATYSNRYITDRFLPDKAIDLVDEAASAL  321
            SV   I ILRG+K KYE HHGVRI+D AL AA   S RYITDRFLPDKAIDL+DEA + +
Sbjct  1    SVEEAIEILRGLKPKYEKHHGVRISDEALEAAVKLSKRYITDRFLPDKAIDLLDEACARV  60

Query  322  RLQQESKPDVIRELDRQITTIQIELESLRKETDISSRERREKLQ  365
            RL QESKP+ + +L+R++  ++IE E+L +E D    ER  KL+
Sbjct  61   RLSQESKPEELEDLERELAKLEIEKEALEREQDFEKAERLAKLE  104


>CDD:463090 pfam10431, ClpB_D2-small, C-terminal, D2-small domain, of ClpB 
protein.  This is the C-terminal domain of ClpB protein, referred 
to as the D2-small domain, and is a mixed alpha-beta 
structure. Compared with the D1-small domain (included in AAA, 
pfam00004) it lacks the long coiled-coil insertion, and 
instead of helix C4 contains a beta-strand (e3) that is part 
of a three stranded beta-pleated sheet. In Thermophilus the 
whole protein forms a hexamer with the D1-small and D2-small 
domains located on the outside of the hexamer, with the long 
coiled-coil being exposed on the surface. The D2-small domain 
is essential for oligomerization, forming a tight interface 
with the D2-large domain of a neighboring subunit and thereby 
providing enough binding energy to stabilize the functional 
assembly. The domain is associated with two Clp_N, pfam02861, 
at the N-terminus as well as AAA, pfam00004 and AAA_2, 
pfam07724.
Length=81

 Score = 108 bits (273),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 45/81 (56%), Positives = 60/81 (74%), Gaps = 0/81 (0%)

Query  696  LSREALRDIVDIRIKELQARLDDRRIVLQVDNEIKDWLCEKGYDPKYGARPLNRLIAKEI  755
            LS+E LR IVD+++KELQ RL +R I L++ +  KDWL EKGYDP+YGARPL R I +EI
Sbjct  1    LSKEELRKIVDLQLKELQKRLAERGITLELTDAAKDWLAEKGYDPEYGARPLRRAIQREI  60

Query  756  GNRLADKIIRGELTSGQTAVI  776
             + LA++I+ GEL  G T  +
Sbjct  61   EDPLAEEILSGELKEGDTVRV  81


>CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily).  This 
Pfam entry includes some of the AAA proteins not detected 
by the pfam00004 model.
Length=135

 Score = 60.8 bits (148),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 56/154 (36%), Gaps = 26/154 (17%)

Query  521  SFMFLGPTGVGKTELCKRMAEFL--FSTETAVLRFDMSEFQEKHTISRLIGS--PAGYVG  576
              + +GP G GKTEL +R+A  L         L  D +E         L G         
Sbjct  1    GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTE-------EDLFGRRNIDPGGA  53

Query  577  YDDAGQLTEAVRRKPYAVLLFDEFEKAHRDISALLLQVLDEG-FLTDSQGHKVDFRNTLI  635
                G L  A R     + + DE  +A+ D+   LL +LDE   L    G  V       
Sbjct  54   SWVDGPLVRAAREG--EIAVLDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAAPDGF  111

Query  636  VLTSNLGADILVGANPLHSFKDYGNAELSPDIKQ  669
             L        +   NPL    D G  ELSP ++ 
Sbjct  112  RL--------IATMNPL----DRGLNELSPALRS  133



Lambda      K        H        a         alpha
   0.316    0.134    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1022971856


Query= TCONS_00007381

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange d...  132     5e-41


>CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange domain. 
 This family is the guanine nucleotide exchange domain of EF-1 
beta and EF-1 delta chains.
Length=83

 Score = 132 bits (336),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 63/84 (75%), Gaps = 1/84 (1%)

Query  144  VTLEVKPWDDETNLDELLENVKAIEIDGLVWGAYKWVPVGFGIKKLQINLVVEDEKVSLD  203
            V L+VKPWDDET+L+EL E +++I++DGLVWGA K  P+ FG+K LQI  VVED++   D
Sbjct  1    VVLKVKPWDDETDLEELEEKIRSIKLDGLVWGASKLEPIAFGLKALQIYCVVEDDEGGTD  60

Query  204  ELQQRIEEDEDHVQSTDIAAMQKL  227
            EL++ IEE  D VQS DI A  KL
Sbjct  61   ELEEAIEEI-DGVQSVDIEAFNKL  83



Lambda      K        H        a         alpha
   0.310    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00001874

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange d...  123     3e-37


>CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange domain. 
 This family is the guanine nucleotide exchange domain of EF-1 
beta and EF-1 delta chains.
Length=83

 Score = 123 bits (311),  Expect = 3e-37, Method: Composition-based stats.
 Identities = 46/78 (59%), Positives = 60/78 (77%), Gaps = 1/78 (1%)

Query  144  VTLEVKPWDDETNLDELLENVKAIEIDGLVWGAYKWVPVGFGIKKLQINLVVEDEKVSLD  203
            V L+VKPWDDET+L+EL E +++I++DGLVWGA K  P+ FG+K LQI  VVED++   D
Sbjct  1    VVLKVKPWDDETDLEELEEKIRSIKLDGLVWGASKLEPIAFGLKALQIYCVVEDDEGGTD  60

Query  204  ELQQRIEEDEDHVQSTDI  221
            EL++ IEE  D VQS DI
Sbjct  61   ELEEAIEEI-DGVQSVDI  77



Lambda      K        H        a         alpha
   0.310    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00001873

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange d...  117     7e-35


>CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange domain. 
 This family is the guanine nucleotide exchange domain of EF-1 
beta and EF-1 delta chains.
Length=83

 Score = 117 bits (296),  Expect = 7e-35, Method: Composition-based stats.
 Identities = 45/84 (54%), Positives = 58/84 (69%), Gaps = 1/84 (1%)

Query  144  VTLEVKPWGMFDRLDELLENVKAIEIDGLVWGAYKWVPVGFGIKKLQINLVVEDEKVSLD  203
            V L+VKPW     L+EL E +++I++DGLVWGA K  P+ FG+K LQI  VVED++   D
Sbjct  1    VVLKVKPWDDETDLEELEEKIRSIKLDGLVWGASKLEPIAFGLKALQIYCVVEDDEGGTD  60

Query  204  ELQQRIEEDEDHVQSTDIAAMQKL  227
            EL++ IEE  D VQS DI A  KL
Sbjct  61   ELEEAIEEI-DGVQSVDIEAFNKL  83



Lambda      K        H        a         alpha
   0.312    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00001876

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange d...  118     1e-36


>CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange domain. 
 This family is the guanine nucleotide exchange domain of EF-1 
beta and EF-1 delta chains.
Length=83

 Score = 118 bits (298),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 63/84 (75%), Gaps = 1/84 (1%)

Query  42   VTLEVKPWDDETNLDELLENVKAIEIDGLVWGAYKWVPVGFGIKKLQINLVVEDEKVSLD  101
            V L+VKPWDDET+L+EL E +++I++DGLVWGA K  P+ FG+K LQI  VVED++   D
Sbjct  1    VVLKVKPWDDETDLEELEEKIRSIKLDGLVWGASKLEPIAFGLKALQIYCVVEDDEGGTD  60

Query  102  ELQQRIEEDEDHVQSTDIAAMQKL  125
            EL++ IEE  D VQS DI A  KL
Sbjct  61   ELEEAIEEI-DGVQSVDIEAFNKL  83



Lambda      K        H        a         alpha
   0.309    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00001875

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange d...  130     5e-40


>CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange domain. 
 This family is the guanine nucleotide exchange domain of EF-1 
beta and EF-1 delta chains.
Length=83

 Score = 130 bits (330),  Expect = 5e-40, Method: Composition-based stats.
 Identities = 48/82 (59%), Positives = 63/82 (77%), Gaps = 1/82 (1%)

Query  144  VTLEVKPWDDETNLDELLENVKAIEIDGLVWGAYKWVPVGFGIKKLQINLVVEDEKVSLD  203
            V L+VKPWDDET+L+EL E +++I++DGLVWGA K  P+ FG+K LQI  VVED++   D
Sbjct  1    VVLKVKPWDDETDLEELEEKIRSIKLDGLVWGASKLEPIAFGLKALQIYCVVEDDEGGTD  60

Query  204  ELQQRIEEDEDHVQSTDIVSFN  225
            EL++ IEE  D VQS DI +FN
Sbjct  61   ELEEAIEEI-DGVQSVDIEAFN  81



Lambda      K        H        a         alpha
   0.310    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00001877

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange d...  132     5e-41


>CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange domain. 
 This family is the guanine nucleotide exchange domain of EF-1 
beta and EF-1 delta chains.
Length=83

 Score = 132 bits (336),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 63/84 (75%), Gaps = 1/84 (1%)

Query  144  VTLEVKPWDDETNLDELLENVKAIEIDGLVWGAYKWVPVGFGIKKLQINLVVEDEKVSLD  203
            V L+VKPWDDET+L+EL E +++I++DGLVWGA K  P+ FG+K LQI  VVED++   D
Sbjct  1    VVLKVKPWDDETDLEELEEKIRSIKLDGLVWGASKLEPIAFGLKALQIYCVVEDDEGGTD  60

Query  204  ELQQRIEEDEDHVQSTDIAAMQKL  227
            EL++ IEE  D VQS DI A  KL
Sbjct  61   ELEEAIEEI-DGVQSVDIEAFNKL  83



Lambda      K        H        a         alpha
   0.310    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00001879

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange d...  132     5e-41


>CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange domain. 
 This family is the guanine nucleotide exchange domain of EF-1 
beta and EF-1 delta chains.
Length=83

 Score = 132 bits (336),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 63/84 (75%), Gaps = 1/84 (1%)

Query  144  VTLEVKPWDDETNLDELLENVKAIEIDGLVWGAYKWVPVGFGIKKLQINLVVEDEKVSLD  203
            V L+VKPWDDET+L+EL E +++I++DGLVWGA K  P+ FG+K LQI  VVED++   D
Sbjct  1    VVLKVKPWDDETDLEELEEKIRSIKLDGLVWGASKLEPIAFGLKALQIYCVVEDDEGGTD  60

Query  204  ELQQRIEEDEDHVQSTDIAAMQKL  227
            EL++ IEE  D VQS DI A  KL
Sbjct  61   ELEEAIEEI-DGVQSVDIEAFNKL  83



Lambda      K        H        a         alpha
   0.310    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00007382

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange d...  129     2e-39


>CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange domain. 
 This family is the guanine nucleotide exchange domain of EF-1 
beta and EF-1 delta chains.
Length=83

 Score = 129 bits (328),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 48/82 (59%), Positives = 63/82 (77%), Gaps = 1/82 (1%)

Query  144  VTLEVKPWDDETNLDELLENVKAIEIDGLVWGAYKWVPVGFGIKKLQINLVVEDEKVSLD  203
            V L+VKPWDDET+L+EL E +++I++DGLVWGA K  P+ FG+K LQI  VVED++   D
Sbjct  1    VVLKVKPWDDETDLEELEEKIRSIKLDGLVWGASKLEPIAFGLKALQIYCVVEDDEGGTD  60

Query  204  ELQQRIEEDEDHVQSTDIVSFN  225
            EL++ IEE  D VQS DI +FN
Sbjct  61   ELEEAIEEI-DGVQSVDIEAFN  81



Lambda      K        H        a         alpha
   0.310    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00001878

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange d...  130     6e-40


>CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange domain. 
 This family is the guanine nucleotide exchange domain of EF-1 
beta and EF-1 delta chains.
Length=83

 Score = 130 bits (329),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 48/84 (57%), Positives = 63/84 (75%), Gaps = 1/84 (1%)

Query  144  VTLEVKPWDDETNLDELLENVKAIEIDGLVWGAYKWVPVGFGIKKLQINLVVEDEKVSLD  203
            V L+VKPWDDET+L+EL E +++I++DGLVWGA K  P+ FG+K LQI  VVED++   D
Sbjct  1    VVLKVKPWDDETDLEELEEKIRSIKLDGLVWGASKLEPIAFGLKALQIYCVVEDDEGGTD  60

Query  204  ELQQRIEEDEDHVQSTDIVSLQKL  227
            EL++ IEE  D VQS DI +  KL
Sbjct  61   ELEEAIEEI-DGVQSVDIEAFNKL  83



Lambda      K        H        a         alpha
   0.310    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00007383

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00001880

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange d...  118     1e-36


>CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange domain. 
 This family is the guanine nucleotide exchange domain of EF-1 
beta and EF-1 delta chains.
Length=83

 Score = 118 bits (298),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 63/84 (75%), Gaps = 1/84 (1%)

Query  42   VTLEVKPWDDETNLDELLENVKAIEIDGLVWGAYKWVPVGFGIKKLQINLVVEDEKVSLD  101
            V L+VKPWDDET+L+EL E +++I++DGLVWGA K  P+ FG+K LQI  VVED++   D
Sbjct  1    VVLKVKPWDDETDLEELEEKIRSIKLDGLVWGASKLEPIAFGLKALQIYCVVEDDEGGTD  60

Query  102  ELQQRIEEDEDHVQSTDIAAMQKL  125
            EL++ IEE  D VQS DI A  KL
Sbjct  61   ELEEAIEEI-DGVQSVDIEAFNKL  83



Lambda      K        H        a         alpha
   0.309    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00001881

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange d...  118     1e-36


>CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange domain. 
 This family is the guanine nucleotide exchange domain of EF-1 
beta and EF-1 delta chains.
Length=83

 Score = 118 bits (298),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 63/84 (75%), Gaps = 1/84 (1%)

Query  42   VTLEVKPWDDETNLDELLENVKAIEIDGLVWGAYKWVPVGFGIKKLQINLVVEDEKVSLD  101
            V L+VKPWDDET+L+EL E +++I++DGLVWGA K  P+ FG+K LQI  VVED++   D
Sbjct  1    VVLKVKPWDDETDLEELEEKIRSIKLDGLVWGASKLEPIAFGLKALQIYCVVEDDEGGTD  60

Query  102  ELQQRIEEDEDHVQSTDIAAMQKL  125
            EL++ IEE  D VQS DI A  KL
Sbjct  61   ELEEAIEEI-DGVQSVDIEAFNKL  83



Lambda      K        H        a         alpha
   0.309    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00001882

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange d...  118     1e-36


>CDD:459919 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange domain. 
 This family is the guanine nucleotide exchange domain of EF-1 
beta and EF-1 delta chains.
Length=83

 Score = 118 bits (298),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 63/84 (75%), Gaps = 1/84 (1%)

Query  42   VTLEVKPWDDETNLDELLENVKAIEIDGLVWGAYKWVPVGFGIKKLQINLVVEDEKVSLD  101
            V L+VKPWDDET+L+EL E +++I++DGLVWGA K  P+ FG+K LQI  VVED++   D
Sbjct  1    VVLKVKPWDDETDLEELEEKIRSIKLDGLVWGASKLEPIAFGLKALQIYCVVEDDEGGTD  60

Query  102  ELQQRIEEDEDHVQSTDIAAMQKL  125
            EL++ IEE  D VQS DI A  KL
Sbjct  61   ELEEAIEEI-DGVQSVDIEAFNKL  83



Lambda      K        H        a         alpha
   0.309    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00007384

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00001883

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431186 pfam10270, MMgT, Membrane magnesium transporter. This ...  119     1e-35


>CDD:431186 pfam10270, MMgT, Membrane magnesium transporter.  This entry 
represents a novel family of membrane magnesium transporters 
(MMgT). The proteins, MMgT1 and MMgT2, are localized to the 
Golgi complex and post-Golgi vesicles, including the early 
endosomes, suggesting that they may provide regulated pathways 
for Mg(2+) transport in the Golgi and post-Golgi organelles 
of epithelium-derived cells.
Length=117

 Score = 119 bits (300),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 51/107 (48%), Positives = 63/107 (59%), Gaps = 20/107 (19%)

Query  90   YSAHEHTVLYSNVRLSS-ASTALPHDIVIEALVSLVIVSAGLVL----------------  132
            YS+HE   L S ++ SS +S++LP DI +E LV+LV+V  GLVL                
Sbjct  13   YSSHEFHQLLSTLKNSSQSSSSLPLDITLETLVALVLVILGLVLSIEKLSYLPLGNEVVI  72

Query  133  -GAEKLKPISWSEWAGEIEREGGARNPYLRLEERYSFWDIRAKRKEF  178
             G+E LKPI   + AGEIEREG   NP+  LE R  F DIR KRKEF
Sbjct  73   SGSEYLKPIQMRKAAGEIEREGE--NPFGELESRPGFIDIRKKRKEF  117



Lambda      K        H        a         alpha
   0.323    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00007385

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00001885

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.117    0.313    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00001887

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.109    0.273    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00001889

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.298    0.107    0.261    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00001890

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.296    0.105    0.254    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00007386

Length=1106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  532     0.0  
CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif. Th...  150     2e-42


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 532 bits (1372),  Expect = 0.0, Method: Composition-based stats.
 Identities = 183/385 (48%), Positives = 237/385 (62%), Gaps = 18/385 (5%)

Query  715   AVKIRRTVVSRTPSTIDVSSSLEYSKAPFENYDYTLVHGACCENIIGYLPLPVGAAGPLV  774
             AV+ RR  +          +  E       + D   V     EN+IGY+ LP+G AGPL+
Sbjct  1     AVEERREALEE-------LTGEELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  775   IDGRNYFIPMATTEGVLVASASRGCKAINAGGGAVTVINADGMTRGPCLAFSSVSRAAEA  834
             I+G++Y +PMATTEG LVASASRG KAINA GG  T +  DGMTRGP   F SV+ AAEA
Sbjct  53    INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  835   KQWIDSDEGKKILATAFNSTSRFARLQGLKSAQAGTYLYVRFKSTTGDAMGMNMISKGVE  894
             K+WI++ E    +A A   TSR   L+ ++   AG  +Y+RF   TGDAMG NM++   E
Sbjct  113   KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  895   KALEVMKGHGFSDMSTISVTGNYCVDKKPAAINWIDGRGKSVVAEALIPADAVRSVLKTD  954
              A  +++   F  M  +S+  N C DKKP+AINWI+GRGKSVVAEA I  + V+ +LK  
Sbjct  173   AAAPLIEEE-FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKAS  231

Query  955   VDALVELNTAKNLVGSAMAGSIGGFNVHASNLVAAVLLATGQDPAQNVESSSCITIMKNV  1014
              +ALV+   AKN +G+   G I G N HA+N +AAV LATGQDPA   ESS     ++  
Sbjct  232   PEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAALETW  289

Query  1015  -NNNLHISVSMPCIEVGTIGGGTILEPQAAMLDLLGVRGAHATNPGDNARQLARIVAAAV  1073
              + +L+ SV++P +EVGT+GGGT L PQA  L LLGV+GA         R+LA I+AA  
Sbjct  290   EDGDLYGSVTLPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAVG  343

Query  1074  LAGELSTCAALAAGHLVSAHMAHNR  1098
             LAGELS   ALAAG +   HM   R
Sbjct  344   LAGELSALRALAAGGIQKGHMKLGR  368


>CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif.  This family 
is found in fungi on proteins carrying the PAS, pfam00989, 
domain. There is a well-conserved characteristic HPIH motif, 
but the function is not known.
Length=152

 Score = 150 bits (380),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 59/160 (37%), Positives = 89/160 (56%), Gaps = 8/160 (5%)

Query  62   HGTSVLGSVARQACKQPIYTLVITALLATMTYTSLLEGSLYNANLTRLSNSHLNQLDVTD  121
              T  L +++R AC+ PI+T+VI ALLA+ TY S+LEG L+  +    S     + D   
Sbjct  1    KVTPPLAALSRFACRHPIHTIVIVALLASTTYLSVLEGYLFGQDSK--SIFSAGKADWDS  58

Query  122  FLQGSRSLRLGKATAWQWETDDESMSDQEVRPSFFLDPVASHLALITLVFPTSENNPGIS  181
             L+GSR LRLG  TAW+W+ +D     +E        P A HLAL+TLVFP S +     
Sbjct  59   LLEGSRHLRLGPETAWKWQLED----SEEAASLSV--PDADHLALLTLVFPDSNSTSSAP  112

Query  182  AVQESIISDLAAAQLVSRTPSVLSSTFRETSITLSVPYNN  221
             +    +    +A L+  TP++LS+   ++S+  S+PY+ 
Sbjct  113  ELDNVPLPSNLSAYLLPSTPNLLSTLSSDSSLAFSLPYDQ  152



Lambda      K        H        a         alpha
   0.320    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1408804142


Query= TCONS_00001892

Length=826
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  525     0.0  


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 525 bits (1354),  Expect = 0.0, Method: Composition-based stats.
 Identities = 183/385 (48%), Positives = 237/385 (62%), Gaps = 18/385 (5%)

Query  435  AVKIRRTVVSRTPSTIDVSSSLEYSKAPFENYDYTLVHGACCENIIGYLPLPVGAAGPLV  494
            AV+ RR  +          +  E       + D   V     EN+IGY+ LP+G AGPL+
Sbjct  1    AVEERREALEE-------LTGEELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  495  IDGRNYFIPMATTEGVLVASASRGCKAINAGGGAVTVINADGMTRGPCLAFSSVSRAAEA  554
            I+G++Y +PMATTEG LVASASRG KAINA GG  T +  DGMTRGP   F SV+ AAEA
Sbjct  53   INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  555  KQWIDSDEGKKILATAFNSTSRFARLQGLKSAQAGTYLYVRFKSTTGDAMGMNMISKGVE  614
            K+WI++ E    +A A   TSR   L+ ++   AG  +Y+RF   TGDAMG NM++   E
Sbjct  113  KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  615  KALEVMKGHGFSDMSTISVTGNYCVDKKPAAINWIDGRGKSVVAEALIPADAVRSVLKTD  674
             A  +++   F  M  +S+  N C DKKP+AINWI+GRGKSVVAEA I  + V+ +LK  
Sbjct  173  AAAPLIEEE-FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKAS  231

Query  675  VDALVELNTAKNLVGSAMAGSIGGFNVHASNLVAAVLLATGQDPAQNVESSSCITIMKNV  734
             +ALV+   AKN +G+   G I G N HA+N +AAV LATGQDPA   ESS     ++  
Sbjct  232  PEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAALETW  289

Query  735  -NNNLHISVSMPCIEVGTIGGGTILEPQAAMLDLLGVRGAHATNPGDNARQLARIVAAAV  793
             + +L+ SV++P +EVGT+GGGT L PQA  L LLGV+GA         R+LA I+AA  
Sbjct  290  EDGDLYGSVTLPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAVG  343

Query  794  LAGELSTCAALAAGHLVSAHMAHNR  818
            LAGELS   ALAAG +   HM   R
Sbjct  344  LAGELSALRALAAGGIQKGHMKLGR  368



Lambda      K        H        a         alpha
   0.321    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1049360734


Query= TCONS_00007387

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif. Th...  96.9    4e-27


>CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif.  This family 
is found in fungi on proteins carrying the PAS, pfam00989, 
domain. There is a well-conserved characteristic HPIH motif, 
but the function is not known.
Length=152

 Score = 96.9 bits (242),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 43/125 (34%), Positives = 66/125 (53%), Gaps = 5/125 (4%)

Query  1    MTYTSLLEGSLYNANLTRLSNSHLNQLDVTDFLQGSRSLRLGKATAWQWETDDESMS---  57
             TY S+LEG L+  +    S     + D    L+GSR LRLG  TAW+W+ +D   +   
Sbjct  30   TTYLSVLEGYLFGQDSK--SIFSAGKADWDSLLEGSRHLRLGPETAWKWQLEDSEEAASL  87

Query  58   DQEVASHLALITLVFPTSENNPGISAVQESIISDLAAAQLVSRTPSVLSSTFRETSITLS  117
                A HLAL+TLVFP S +      +    +    +A L+  TP++LS+   ++S+  S
Sbjct  88   SVPDADHLALLTLVFPDSNSTSSAPELDNVPLPSNLSAYLLPSTPNLLSTLSSDSSLAFS  147

Query  118  VPYNN  122
            +PY+ 
Sbjct  148  LPYDQ  152



Lambda      K        H        a         alpha
   0.311    0.124    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00001894

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00001895

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00001896

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00001897

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00001898

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40...  216     2e-67
CDD:400158 pfam07687, M20_dimer, Peptidase dimerization domain. T...  72.0    4e-16


>CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  This 
family includes a range of zinc metallopeptidases belonging 
to several families in the peptidase classification. Family 
M20 are Glutamate carboxypeptidases. Peptidase family M25 contains 
X-His dipeptidases.
Length=315

 Score = 216 bits (552),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 102/303 (34%), Positives = 148/303 (49%), Gaps = 32/303 (11%)

Query  118  LLRADMDALPVKELTGLPYASTVRMRDADGVEKPVMHACGHDMHMTCLLAAAETLANM--  175
            LLR  MD +P +E  G P+ ST      DG     ++  GHD     LLAA E L  +  
Sbjct  1    LLRGHMDVVPDEETWGWPFKSTE-----DGK----LYGRGHDDMKGGLLAALEALRALKE  51

Query  176  QHAWSGTLIVLFQPNEERG-GGAQAMVDDGLYSKIPVPDYVFGQHVM--RMRAGSVGCRP  232
            +    GT+ +LFQP+EE G GGA+A+++DGL  +  V D VFG H+    +  G +    
Sbjct  52   EGLKKGTVKLLFQPDEEGGMGGARALIEDGLLEREKV-DAVFGLHIGEPTLLEGGIAIGV  110

Query  233  GTIMAAADSLKVTVYGRGGHGSLPHQTVDPALLAAHIVVRLQGIVSREIDPSDLAVVTVG  292
             T    +   +VTV G+GGH S PH  V+  + AA +++ LQ IVSR +DP D AVVTVG
Sbjct  111  VTGHRGSLRFRVTVKGKGGHASTPHLGVNAIVAAARLILALQDIVSRNVDPLDPAVVTVG  170

Query  293  S---LQAGQTENIIADRAEVGLDFRTVKLETRQKILSAVQRIVEAECMASGSPKPPVFTP  349
            +   +  G   N+I   AE+  D R +  E  +++   ++ I+EA   A+   K  V   
Sbjct  171  NITGIPGGV--NVIPGEAELKGDIRLLPGEDLEELEERIREILEAIA-AAYGVKVEVEYV  227

Query  350  TRRFPPTVNDEQVASQLAASFAQHFEDFDGDTPRTNVS-----EDFSTLGTCRGIPCCFW  404
                PP VND  + + L  +     ++  G      VS      D +      G+P    
Sbjct  228  EGGAPPLVNDSPLVAALREA----AKELFGLKVELIVSGSMGGTDAAFFL--LGVPPTVV  281

Query  405  FLG  407
            F G
Sbjct  282  FFG  284


>CDD:400158 pfam07687, M20_dimer, Peptidase dimerization domain.  This domain 
consists of 4 beta strands and two alpha helices which 
make up the dimerization surface of members of the M20 family 
of peptidases. This family includes a range of zinc metallopeptidases 
belonging to several families in the peptidase classification. 
Family M20 are Glutamate carboxypeptidases. Peptidase 
family M25 contains X-His dipeptidases.
Length=107

 Score = 72.0 bits (177),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 22/96 (23%), Positives = 40/96 (42%), Gaps = 0/96 (0%)

Query  241  SLKVTVYGRGGHGSLPHQTVDPALLAAHIVVRLQGIVSREIDPSDLAVVTVGSLQAGQTE  300
               +TV G+ GH   P + V+   L A ++  L               + +  ++ G   
Sbjct  8    GGHLTVKGKAGHSGAPGKGVNAIKLLARLLAELPAEYGDIGFDFPRTTLNITGIEGGTAT  67

Query  301  NIIADRAEVGLDFRTVKLETRQKILSAVQRIVEAEC  336
            N+I   AE   D R +  E  +++L  ++ I+E E 
Sbjct  68   NVIPAEAEAKFDIRLLPGEDLEELLEEIEAILEKEL  103



Lambda      K        H        a         alpha
   0.321    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00007388

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00001899

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40...  216     2e-67
CDD:400158 pfam07687, M20_dimer, Peptidase dimerization domain. T...  72.0    4e-16


>CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  This 
family includes a range of zinc metallopeptidases belonging 
to several families in the peptidase classification. Family 
M20 are Glutamate carboxypeptidases. Peptidase family M25 contains 
X-His dipeptidases.
Length=315

 Score = 216 bits (552),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 102/303 (34%), Positives = 148/303 (49%), Gaps = 32/303 (11%)

Query  118  LLRADMDALPVKELTGLPYASTVRMRDADGVEKPVMHACGHDMHMTCLLAAAETLANM--  175
            LLR  MD +P +E  G P+ ST      DG     ++  GHD     LLAA E L  +  
Sbjct  1    LLRGHMDVVPDEETWGWPFKSTE-----DGK----LYGRGHDDMKGGLLAALEALRALKE  51

Query  176  QHAWSGTLIVLFQPNEERG-GGAQAMVDDGLYSKIPVPDYVFGQHVM--RMRAGSVGCRP  232
            +    GT+ +LFQP+EE G GGA+A+++DGL  +  V D VFG H+    +  G +    
Sbjct  52   EGLKKGTVKLLFQPDEEGGMGGARALIEDGLLEREKV-DAVFGLHIGEPTLLEGGIAIGV  110

Query  233  GTIMAAADSLKVTVYGRGGHGSLPHQTVDPALLAAHIVVRLQGIVSREIDPSDLAVVTVG  292
             T    +   +VTV G+GGH S PH  V+  + AA +++ LQ IVSR +DP D AVVTVG
Sbjct  111  VTGHRGSLRFRVTVKGKGGHASTPHLGVNAIVAAARLILALQDIVSRNVDPLDPAVVTVG  170

Query  293  S---LQAGQTENIIADRAEVGLDFRTVKLETRQKILSAVQRIVEAECMASGSPKPPVFTP  349
            +   +  G   N+I   AE+  D R +  E  +++   ++ I+EA   A+   K  V   
Sbjct  171  NITGIPGGV--NVIPGEAELKGDIRLLPGEDLEELEERIREILEAIA-AAYGVKVEVEYV  227

Query  350  TRRFPPTVNDEQVASQLAASFAQHFEDFDGDTPRTNVS-----EDFSTLGTCRGIPCCFW  404
                PP VND  + + L  +     ++  G      VS      D +      G+P    
Sbjct  228  EGGAPPLVNDSPLVAALREA----AKELFGLKVELIVSGSMGGTDAAFFL--LGVPPTVV  281

Query  405  FLG  407
            F G
Sbjct  282  FFG  284


>CDD:400158 pfam07687, M20_dimer, Peptidase dimerization domain.  This domain 
consists of 4 beta strands and two alpha helices which 
make up the dimerization surface of members of the M20 family 
of peptidases. This family includes a range of zinc metallopeptidases 
belonging to several families in the peptidase classification. 
Family M20 are Glutamate carboxypeptidases. Peptidase 
family M25 contains X-His dipeptidases.
Length=107

 Score = 72.0 bits (177),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 22/96 (23%), Positives = 40/96 (42%), Gaps = 0/96 (0%)

Query  241  SLKVTVYGRGGHGSLPHQTVDPALLAAHIVVRLQGIVSREIDPSDLAVVTVGSLQAGQTE  300
               +TV G+ GH   P + V+   L A ++  L               + +  ++ G   
Sbjct  8    GGHLTVKGKAGHSGAPGKGVNAIKLLARLLAELPAEYGDIGFDFPRTTLNITGIEGGTAT  67

Query  301  NIIADRAEVGLDFRTVKLETRQKILSAVQRIVEAEC  336
            N+I   AE   D R +  E  +++L  ++ I+E E 
Sbjct  68   NVIPAEAEAKFDIRLLPGEDLEELLEEIEAILEKEL  103



Lambda      K        H        a         alpha
   0.321    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00007389

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464110 pfam14226, DIOX_N, non-haem dioxygenase in morphine sy...  85.8    4e-21
CDD:397334 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfam...  74.8    3e-17


>CDD:464110 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis 
N-terminal.  This is the highly conserved N-terminal region 
of proteins with 2-oxoglutarate/Fe(II)-dependent dioxygenase 
activity.
Length=116

 Score = 85.8 bits (213),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 41/125 (33%), Positives = 61/125 (49%), Gaps = 18/125 (14%)

Query  46   LPVIDYAALGEKDAAGHRTAVSIDERRRLFTALRDIGFAYLKHPGVNQVTVDELFAHSRR  105
            +PVID + LG+ +    R AV+     +L  A R+ GF  L + GV +  +DELF  +R 
Sbjct  1    IPVIDLSPLGDPED---RAAVA----AQLREACREWGFFQLVNHGVPEELIDELFEAARE  53

Query  106  FFAKPLEEKMQILGKLDKGRGPSQGYSNPQQLAHNPQTSDLKEFFGMYRDDDTEK-----  160
            FFA PLEEK++            +GY      + + +  D KEFF +  +   +      
Sbjct  54   FFALPLEEKLKYANP-----PSFRGYGRLGVESTDGKKLDWKEFFDLGTELPADPPLPLR  108

Query  161  -PNQW  164
             PNQW
Sbjct  109  GPNQW  113


>CDD:397334 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily.  This 
family contains members of the 2-oxoglutarate (2OG) and 
Fe(II)-dependent oxygenase superfamily. This family includes 
the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme 
has the activity EC:1.14.11.2 catalyzing the reaction: 
Procollagen L-proline + 2-oxoglutarate + O2 <=> procollagen 
trans- 4-hydroxy-L-proline + succinate + CO2. The full 
enzyme consists of a alpha2 beta2 complex with the alpha subunit 
contributing most of the parts of the active site. The 
family also includes lysyl hydrolases, isopenicillin synthases 
and AlkB.
Length=101

 Score = 74.8 bits (184),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 35/111 (32%), Positives = 50/111 (45%), Gaps = 12/111 (11%)

Query  214  NHFIACLHYPATEPESFRTRVRAAAHTDYGCLTLLFNDSGEGLQVLRNNGQYEYVPRKDG  273
            +  +   +YP   P+   T      HTD   LT+L  D   GLQV ++ G++  VP   G
Sbjct  2    DQCLVLNYYPP-HPDPDLTL-GLGPHTDASILTILLQDDVGGLQVFKD-GKWIDVPPLPG  58

Query  274  CAVLNVGDLLSRFFNGVLPSTMHRVVEPPATRSGSSADQVPDRYAIAFFGH  324
              V+N+GD L    NG   S +HRV+     +          R +IAFF  
Sbjct  59   ALVVNIGDQLELLSNGRYKSVLHRVLPVNKGKE---------RISIAFFLR  100



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00001900

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464110 pfam14226, DIOX_N, non-haem dioxygenase in morphine sy...  85.8    4e-21
CDD:397334 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfam...  74.8    3e-17


>CDD:464110 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis 
N-terminal.  This is the highly conserved N-terminal region 
of proteins with 2-oxoglutarate/Fe(II)-dependent dioxygenase 
activity.
Length=116

 Score = 85.8 bits (213),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 41/125 (33%), Positives = 61/125 (49%), Gaps = 18/125 (14%)

Query  46   LPVIDYAALGEKDAAGHRTAVSIDERRRLFTALRDIGFAYLKHPGVNQVTVDELFAHSRR  105
            +PVID + LG+ +    R AV+     +L  A R+ GF  L + GV +  +DELF  +R 
Sbjct  1    IPVIDLSPLGDPED---RAAVA----AQLREACREWGFFQLVNHGVPEELIDELFEAARE  53

Query  106  FFAKPLEEKMQILGKLDKGRGPSQGYSNPQQLAHNPQTSDLKEFFGMYRDDDTEK-----  160
            FFA PLEEK++            +GY      + + +  D KEFF +  +   +      
Sbjct  54   FFALPLEEKLKYANP-----PSFRGYGRLGVESTDGKKLDWKEFFDLGTELPADPPLPLR  108

Query  161  -PNQW  164
             PNQW
Sbjct  109  GPNQW  113


>CDD:397334 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily.  This 
family contains members of the 2-oxoglutarate (2OG) and 
Fe(II)-dependent oxygenase superfamily. This family includes 
the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme 
has the activity EC:1.14.11.2 catalyzing the reaction: 
Procollagen L-proline + 2-oxoglutarate + O2 <=> procollagen 
trans- 4-hydroxy-L-proline + succinate + CO2. The full 
enzyme consists of a alpha2 beta2 complex with the alpha subunit 
contributing most of the parts of the active site. The 
family also includes lysyl hydrolases, isopenicillin synthases 
and AlkB.
Length=101

 Score = 74.8 bits (184),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 35/111 (32%), Positives = 50/111 (45%), Gaps = 12/111 (11%)

Query  214  NHFIACLHYPATEPESFRTRVRAAAHTDYGCLTLLFNDSGEGLQVLRNNGQYEYVPRKDG  273
            +  +   +YP   P+   T      HTD   LT+L  D   GLQV ++ G++  VP   G
Sbjct  2    DQCLVLNYYPP-HPDPDLTL-GLGPHTDASILTILLQDDVGGLQVFKD-GKWIDVPPLPG  58

Query  274  CAVLNVGDLLSRFFNGVLPSTMHRVVEPPATRSGSSADQVPDRYAIAFFGH  324
              V+N+GD L    NG   S +HRV+     +          R +IAFF  
Sbjct  59   ALVVNIGDQLELLSNGRYKSVLHRVLPVNKGKE---------RISIAFFLR  100



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0744    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00001901

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464110 pfam14226, DIOX_N, non-haem dioxygenase in morphine sy...  86.2    1e-21


>CDD:464110 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis 
N-terminal.  This is the highly conserved N-terminal region 
of proteins with 2-oxoglutarate/Fe(II)-dependent dioxygenase 
activity.
Length=116

 Score = 86.2 bits (214),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 41/125 (33%), Positives = 61/125 (49%), Gaps = 18/125 (14%)

Query  46   LPVIDYAALGEKDAAGHRTAVSIDERRRLFTALRDIGFAYLKHPGVNQVTVDELFAHSRR  105
            +PVID + LG+ +    R AV+     +L  A R+ GF  L + GV +  +DELF  +R 
Sbjct  1    IPVIDLSPLGDPED---RAAVA----AQLREACREWGFFQLVNHGVPEELIDELFEAARE  53

Query  106  FFAKPLEEKMQILGKLDKGRGPSQGYSNPQQLAHNPQTSDLKEFFGMYRDDDTEK-----  160
            FFA PLEEK++            +GY      + + +  D KEFF +  +   +      
Sbjct  54   FFALPLEEKLKYANP-----PSFRGYGRLGVESTDGKKLDWKEFFDLGTELPADPPLPLR  108

Query  161  -PNQW  164
             PNQW
Sbjct  109  GPNQW  113



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00001902

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00001903

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00001904

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426279 pfam01474, DAHP_synth_2, Class-II DAHP synthetase fami...  506     2e-179


>CDD:426279 pfam01474, DAHP_synth_2, Class-II DAHP synthetase family.  Members 
of this family are aldolase enzymes that catalyze the 
first step of the shikimate pathway.
Length=437

 Score = 506 bits (1306),  Expect = 2e-179, Method: Composition-based stats.
 Identities = 199/447 (45%), Positives = 268/447 (60%), Gaps = 48/447 (11%)

Query  27   WTPQSWRKRPAIAQEIEYKEPLALEEVLRTVASLPPLVSPVKIELARKHFAAAARGEAFI  86
            W+P SWR +P   Q+  Y +P ALE VL  +ASLPPLV   +I   +   A  ARGEAF+
Sbjct  1    WSPSSWRSKP-AKQQPTYPDPAALEAVLAELASLPPLVFAGEIRRLKAQLADVARGEAFL  59

Query  87   IQGGDCAESFQDVRPLIVQQKVQLLHEQSRLLRDSLGLPVITVGRIAGQYAKPRSCPFET  146
            +QGGDCAESF +     ++ K+++L + + +L      PV+ VGRIAGQYAKPRS P ET
Sbjct  60   LQGGDCAESFDECTADNIRDKLKVLLQMAVVLTYGASKPVVKVGRIAGQYAKPRSSPTET  119

Query  147  LADGSQVYSFRGENVHG--FHPDDRTPDPNRLLQAYFYARATLDLMKACP-----PLRTP  199
            + DG  + S+RG+ V+G  F  + R PDP RLL+AYF++ ATL+L++A        L   
Sbjct  120  V-DGVTLPSYRGDIVNGFEFTEEARRPDPERLLRAYFHSAATLNLLRAFASGGFADLHRV  178

Query  200  P--SVDAIASPG-----RDLFR--------------TNLPGEPGQGPIFTSHEALHLPYE  238
               ++D +          +L                 +          +TSHEAL L YE
Sbjct  179  HDWNLDFVRDSPLGERYEELADRIDDALRFMRACGVDSEDPALRTVDFYTSHEALLLDYE  238

Query  239  SAVT------HGRYNTSATFVWIGERTRQRNGPHLEYVRGIRNPIGIKVGPTMRPQELVD  292
             A+T         Y+TSA F+WIG+RTRQ +G H+E+ RGIRNPIG+KVGPT  P EL+ 
Sbjct  239  EALTRVDSTTGDWYDTSAHFLWIGDRTRQLDGAHVEFFRGIRNPIGVKVGPTTTPDELLR  298

Query  293  LLDLIIRQPQDRHDPQD--GRVTIITRLGADQVETVLPPLIHAVQKAGHTPVWMCDPCHG  350
            LLD++        +P +  GR+T+ITR+GAD+V  +LPPLI AV+ +GH  VW CDP HG
Sbjct  299  LLDIL--------NPDNEPGRLTLITRMGADKVRDLLPPLIEAVKASGHKVVWSCDPMHG  350

Query  351  NTTVTPSGIKTRCVETIVREVIRTFEVHRASGSFMGGLHLEQTGEFVTECVDAWDTSCER  410
            NT  T SG KTR  + I+ EV   FEVHRA G+  GG+HLE TG+ VTEC+       E 
Sbjct  351  NTITTSSGYKTRRFDDILDEVRGFFEVHRAEGTHPGGVHLELTGDDVTECLGGSRGLTEE  410

Query  411  DLTTNYRSLCDPRLSYIQALAVVRSFL  437
            DL+  Y + CDPRL+  Q+L +  +FL
Sbjct  411  DLSLRYETFCDPRLNAEQSLEL--AFL  435



Lambda      K        H        a         alpha
   0.320    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00001905

Length=442
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region...  71.1    1e-14


>CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region.  This 
family describes a region that is found in proteins expressed 
by a variety of eukaryotic and prokaryotic species. These 
proteins include various enzymes, such as senescence marker 
protein 30 (SMP-30), gluconolactonase and luciferin-regenerating 
enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl 
phosphorofluoridate in the liver, and has been noted as having 
sequence similarity, in the region described in this family, 
with PON1 and LRE.
Length=246

 Score = 71.1 bits (175),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 62/167 (37%), Gaps = 37/167 (22%)

Query  240  DVIVDPVTGFVWFTVPYYSWWLEVADTPPQLKSATYRFDPATGSTVVVNDEMRSPNGIAL  299
            D  VDP  G  WF            + P     A YR DP  G    V D +   NG+A 
Sbjct  90   DGKVDP-DGRFWFGTMGDD------EAPGGDPGALYRLDP-DGKLTRVLDGLTISNGLAW  141

Query  300  SPDRRHLYISDTEAAGQSAPISLDLPSPGVAGLLFNTTGKRTIYKFDLIDQGHAIANKRP  359
            SPD R LY +D+ A                          R I+ +D    G  I+N+R 
Sbjct  142  SPDGRTLYFADSPA--------------------------RKIWAYDYDLDGGLISNRRV  175

Query  360  -IHYDAIGTVPDGLKVARNG--WVVTASGNGLSVMDEYGEMIARVQV  403
               +      PDG+ V   G  WV    G  +   D  G+++  +++
Sbjct  176  FADFKPGLGRPDGMAVDAEGNVWVARWGGGKVVRFDPDGKLLREIEL  222



Lambda      K        H        a         alpha
   0.320    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 539863808


Query= TCONS_00001906

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            85.5    1e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 85.5 bits (212),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 123/375 (33%), Gaps = 65/375 (17%)

Query  107  ELSWLVAGYSLTIGTFVLIAGRLGDDFGHKRMFVIGMGWYALWTLVCGLAVYSTQVLFIF  166
            E+  L+  +SL       +AGRL D FG +R+ +IG+  +AL  L+   A  S+  L + 
Sbjct  33   EIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA--SSLWLLLV  90

Query  167  ARVFQGMGPAVTLPNAIAILGQSYAPGPRKNMAFAFFGGSAPFGAISGFATGGLFALAW-  225
             RV QG+G     P A+A++   + P   +  A          GA  G   GGL A  + 
Sbjct  91   LRVLQGLGAGALFPAALALIAD-WFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFG  149

Query  226  WPWAYWSAAIALTGLAVFAVWSIPPQPVSATATTRTVGQKIAHLDLAGCVTGVASLVLIN  285
            W  A+   AI     AV  +   PP               +                   
Sbjct  150  WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLI------------------  191

Query  286  FAWNQAAGVGWQEPYVYVCLILGFLAAAAFFWVELHWSEDPILPLAAFNSDIAFVLGCTA  345
                          +  +          A                               
Sbjct  192  ------------VAWKALLRDPVLWLLLALL-----------------------------  210

Query  346  CGWATFGIWVYYAAVFVMELNHVSPLLLAAWYSPVIPSGLGAALAVGKLLGRVSAAWVMV  405
                 F   + Y  ++   L  +S LL           G    L +G+L  R+     ++
Sbjct  211  LFGFAFFGLLTYLPLYQEVL-GLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLL  269

Query  406  IGMVAYLIGSILIATMPTHQIYWGNFFWSVLIICVGMDSSFPAATIIFSDAVPPKYQGIG  465
            + ++  ++ ++ +  +    +       ++L++  G    FPA   + SD  P + +G  
Sbjct  270  LALLLLILAALGLLLLS-LTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTA  328

Query  466  ASVVMTIVNYSISLG  480
            + +  T  +   +LG
Sbjct  329  SGLYNTAGSLGGALG  343



Lambda      K        H        a         alpha
   0.325    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00001907

Length=538
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            84.4    3e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 84.4 bits (209),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 123/375 (33%), Gaps = 65/375 (17%)

Query  97   ELSWLVAGYSLTIGTFVLIAGRLGDDFGHKRMFVIGMGWYALWTLVCGLAVYSTQVLFIF  156
            E+  L+  +SL       +AGRL D FG +R+ +IG+  +AL  L+   A  S+  L + 
Sbjct  33   EIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA--SSLWLLLV  90

Query  157  ARVFQGMGPAVTLPNAIAILGQSYAPGPRKNMAFAFFGGSAPFGAISGFATGGLFALAW-  215
             RV QG+G     P A+A++   + P   +  A          GA  G   GGL A  + 
Sbjct  91   LRVLQGLGAGALFPAALALIAD-WFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFG  149

Query  216  WPWAYWSAAIALTGLAVFAVWSIPPQPVSATATTRTVGQKIAHLDLAGCVTGVASLVLIN  275
            W  A+   AI     AV  +   PP               +                   
Sbjct  150  WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLI------------------  191

Query  276  FAWNQAAGVGWQEPYVYVCLILGFLAAAAFFWVELHWSEDPILPLAAFNSDIAFVLGCTA  335
                          +  +          A                               
Sbjct  192  ------------VAWKALLRDPVLWLLLALL-----------------------------  210

Query  336  CGWATFGIWVYYAAVFVMELNHVSPLLLAAWYSPVIPSGLGAALAVGKLLGRVSAAWVMV  395
                 F   + Y  ++   L  +S LL           G    L +G+L  R+     ++
Sbjct  211  LFGFAFFGLLTYLPLYQEVL-GLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLL  269

Query  396  IGMVAYLIGSILIATMPTHQIYWGNFFWSVLIICVGMDSSFPAATIIFSDAVPPKYQGIG  455
            + ++  ++ ++ +  +    +       ++L++  G    FPA   + SD  P + +G  
Sbjct  270  LALLLLILAALGLLLLS-LTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTA  328

Query  456  ASVVMTIVNYSISLG  470
            + +  T  +   +LG
Sbjct  329  SGLYNTAGSLGGALG  343



Lambda      K        H        a         alpha
   0.325    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 676787502


Query= TCONS_00001908

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            80.9    3e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 80.9 bits (200),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 123/375 (33%), Gaps = 65/375 (17%)

Query  92   ELSWLVAGYSLTIGTFVLIAGRLGDDFGHKRMFVIGMGWYALWTLVCGLAVYSTQVLFIF  151
            E+  L+  +SL       +AGRL D FG +R+ +IG+  +AL  L+   A  S+  L + 
Sbjct  33   EIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA--SSLWLLLV  90

Query  152  ARVFQGMGPAVTLPNAIAILGQSYAPGPRKNMAFAFFGGSAPFGAISGFATGGLFALAW-  210
             RV QG+G     P A+A++   + P   +  A          GA  G   GGL A  + 
Sbjct  91   LRVLQGLGAGALFPAALALIAD-WFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFG  149

Query  211  WPWAYWSAAIALTGLAVFAVWSIPPQPVSATATTRTVGQKIAHLDLAGCVTGVASLVLIN  270
            W  A+   AI     AV  +   PP               +                   
Sbjct  150  WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLI------------------  191

Query  271  FAWNQAAGVGWQEPYVYVCLILGFLAAAAFFWVELHWSEDPILPLAAFNSDIAFVLGCTA  330
                          +  +          A                               
Sbjct  192  ------------VAWKALLRDPVLWLLLALL-----------------------------  210

Query  331  CGWATFGIWVYYAAVFVMELNHVSPLLLAAWYSPVIPSGLGAALAVGKLLGRVSAAWVMV  390
                 F   + Y  ++   L  +S LL           G    L +G+L  R+     ++
Sbjct  211  LFGFAFFGLLTYLPLYQEVL-GLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLL  269

Query  391  IGMVAYLIGSILIATMPTHQIYWGNFFWSVLIICVGMDSSFPAATIIFSDAVPPKYQGIG  450
            + ++  ++ ++ +  +    +       ++L++  G    FPA   + SD  P + +G  
Sbjct  270  LALLLLILAALGLLLLS-LTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTA  328

Query  451  ASVVMTIVNYSISLG  465
            + +  T  +   +LG
Sbjct  329  SGLYNTAGSLGGALG  343



Lambda      K        H        a         alpha
   0.326    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00001909

Length=352


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00001910

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  127     2e-38


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 127 bits (320),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 55/149 (37%), Positives = 69/149 (46%), Gaps = 12/149 (8%)

Query  30   PVSRGNVTIQSADSRDPPVINTNTLGSATDQQVAIAAFKRLREIFEAPELAPVRLGDEYY  89
            P SRG VT+ S+D    PVI+ N L    D     AA +  R I  A  L    LG E  
Sbjct  1    PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGL---VLGVELT  57

Query  90   PGKHS------VRTDAEILQFIQQNGLAFYHAGSSCAMGDPDAVNSTAVVDSKARVIGIK  143
            PG         V +D E+L +I+      YH   +C MG        AVVD   RV G+ 
Sbjct  58   PGPVPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPD---DAVVDPDLRVHGVD  114

Query  144  GVRVVDAAALPFLPPSHIQSAIYALAEKI  172
             +RVVDA+  P  P  +    IYALAE+ 
Sbjct  115  NLRVVDASVFPSSPSGNPTLTIYALAERA  143



Lambda      K        H        a         alpha
   0.316    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00001911

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  70.0    1e-14


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 70.0 bits (172),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 49/109 (45%), Gaps = 17/109 (16%)

Query  30   ETQERASAANTYLKEFADLPNLTVYTETVAKRILFDDTKT-ATGVVVE-MAGLEHTLAVD  87
             T  + S A T+L+  A   NL + T   A++I+       A GV      G    L   
Sbjct  122  PTGAKQSTARTWLRP-ALERNLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKRLITA  180

Query  88   -KEVILSAGALQSPQLLMVSGVGPARTLDSLDIPIVHDSPYVGQNLIDH  135
             KEV+++AGAL +P LL+ SG+G             H    VG+NL  H
Sbjct  181  AKEVVVAAGALNTPPLLLRSGLGKNP----------HP---VGKNLQLH  216



Lambda      K        H        a         alpha
   0.319    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00001912

Length=622
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  105     3e-27
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  92.3    8e-22


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 105 bits (264),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 49/145 (34%), Positives = 63/145 (43%), Gaps = 21/145 (14%)

Query  453  PVSRGNVTIQSADSRDPPVINTNTLGSATDQQVAIAAFKRLREIFEAPELAPVRLGDEYY  512
            P SRG VT+ S+D    PVI+ N L    D     AA +  R I  A     + LG E  
Sbjct  1    PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAA---GLVLGVELT  57

Query  513  PGKHS------VRTDAEILQFIQQNGLAFYHAGSSCAMGDPDAVNSTAVVDSKARVIGIK  566
            PG         V +D E+L +I+      YH   +C MG        AVVD   RV G+ 
Sbjct  58   PGPVPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPD---DAVVDPDLRVHGVD  114

Query  567  GVRVVDAAYVMVSDCTRRDPTLGCG  591
             +RVVDA+ V         P+   G
Sbjct  115  NLRVVDAS-VF--------PSSPSG  130


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 92.3 bits (230),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 64/249 (26%), Positives = 92/249 (37%), Gaps = 53/249 (21%)

Query  96   GGRVFGYPRGKCVGGSSARNSQLLRKYTRAPVGAFQRWADQVGDQSYAWSEFERFFQKGT  155
             GR    P G  VGG S+ N        R P      WA + G + + + ++  +  K  
Sbjct  15   NGRRMILPAGSTVGGGSSVNWSA---CIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE  71

Query  156  NFTAPDPDRRAHNATPGYHPGAFSSGGGPLTVT-YANWASPISSWIQRAMRAVGI-HDAG  213
                                       GPL VT      SP++  + +A   +G   +A 
Sbjct  72   ---------------------------GPLGVTTKGIEESPLNQALLKAAEELGYPVEAV  104

Query  214  DFNSGRIMGSQYFALTTTP-ETQERASAANTYLKEFADLPNLTVYTETVAKRILFDDTKT  272
              NS    G  Y         T  + S A T+L+  A   NL + T   A++I+      
Sbjct  105  PRNSN---GCHYCGFCGLGCPTGAKQSTARTWLRP-ALERNLRILTGAKAEKIIILGRGG  160

Query  273  -ATGVVVE-MAGLEHTLAVD-KEVILSAGALQSPQLLMVSGVGPARTLDSLDIPIVHDSP  329
             A GV      G    L    KEV+++AGAL +P LL+ SG+G             H   
Sbjct  161  RAVGVEARDGGGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNP----------HP--  208

Query  330  YVGQNLIDH  338
             VG+NL  H
Sbjct  209  -VGKNLQLH  216



Lambda      K        H        a         alpha
   0.319    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 792046840


Query= TCONS_00001915

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00001914

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  91.6    1e-21


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 91.6 bits (228),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 64/249 (26%), Positives = 92/249 (37%), Gaps = 53/249 (21%)

Query  96   GGRVFGYPRGKCVGGSSARNSQLLRKYTRAPVGAFQRWADQVGDQSYAWSEFERFFQKGT  155
             GR    P G  VGG S+ N        R P      WA + G + + + ++  +  K  
Sbjct  15   NGRRMILPAGSTVGGGSSVNWSA---CIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE  71

Query  156  NFTAPDPDRRAHNATPGYHPGAFSSGGGPLTVT-YANWASPISSWIQRAMRAVGI-HDAG  213
                                       GPL VT      SP++  + +A   +G   +A 
Sbjct  72   ---------------------------GPLGVTTKGIEESPLNQALLKAAEELGYPVEAV  104

Query  214  DFNSGRIMGSQYFALTTTP-ETQERASAANTYLKEFADLPNLTVYTETVAKRILFDDTKT  272
              NS    G  Y         T  + S A T+L+  A   NL + T   A++I+      
Sbjct  105  PRNSN---GCHYCGFCGLGCPTGAKQSTARTWLRP-ALERNLRILTGAKAEKIIILGRGG  160

Query  273  -ATGVVVE-MAGLEHTLAVD-KEVILSAGALQSPQLLMVSGVGPARTLDSLDIPIVHDSP  329
             A GV      G    L    KEV+++AGAL +P LL+ SG+G             H   
Sbjct  161  RAVGVEARDGGGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNP----------HP--  208

Query  330  YVGQNLIDH  338
             VG+NL  H
Sbjct  209  -VGKNLQLH  216



Lambda      K        H        a         alpha
   0.319    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682843766


Query= TCONS_00001913

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  127     6e-36
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  70.0    2e-14


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 127 bits (320),  Expect = 6e-36, Method: Composition-based stats.
 Identities = 55/149 (37%), Positives = 69/149 (46%), Gaps = 12/149 (8%)

Query  250  PVSRGNVTIQSADSRDPPVINTNTLGSATDQQVAIAAFKRLREIFEAPELAPVRLGDEYY  309
            P SRG VT+ S+D    PVI+ N L    D     AA +  R I  A  L    LG E  
Sbjct  1    PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGL---VLGVELT  57

Query  310  PGKHS------VRTDAEILQFIQQNGLAFYHAGSSCAMGDPDAVNSTAVVDSKARVIGIK  363
            PG         V +D E+L +I+      YH   +C MG        AVVD   RV G+ 
Sbjct  58   PGPVPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPD---DAVVDPDLRVHGVD  114

Query  364  GVRVVDAAALPFLPPSHIQSAIYALAEKI  392
             +RVVDA+  P  P  +    IYALAE+ 
Sbjct  115  NLRVVDASVFPSSPSGNPTLTIYALAERA  143


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 70.0 bits (172),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 49/109 (45%), Gaps = 17/109 (16%)

Query  30   ETQERASAANTYLKEFADLPNLTVYTETVAKRILFDDTKT-ATGVVVE-MAGLEHTLAVD  87
             T  + S A T+L+  A   NL + T   A++I+       A GV      G    L   
Sbjct  122  PTGAKQSTARTWLRP-ALERNLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKRLITA  180

Query  88   -KEVILSAGALQSPQLLMVSGVGPARTLDSLDIPIVHDSPYVGQNLIDH  135
             KEV+++AGAL +P LL+ SG+G             H    VG+NL  H
Sbjct  181  AKEVVVAAGALNTPPLLLRSGLGKNP----------HP---VGKNLQLH  216



Lambda      K        H        a         alpha
   0.317    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 497069440


Query= TCONS_00007391

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00007392

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  88.9    9e-21


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 88.9 bits (221),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 64/249 (26%), Positives = 92/249 (37%), Gaps = 53/249 (21%)

Query  96   GGRVFGYPRGKCVGGSSARNSQLLRKYTRAPVGAFQRWADQVGDQSYAWSEFERFFQKGT  155
             GR    P G  VGG S+ N        R P      WA + G + + + ++  +  K  
Sbjct  15   NGRRMILPAGSTVGGGSSVNWSA---CIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE  71

Query  156  NFTAPDPDRRAHNATPGYHPGAFSSGGGPLTVT-YANWASPISSWIQRAMRAVGI-HDAG  213
                                       GPL VT      SP++  + +A   +G   +A 
Sbjct  72   ---------------------------GPLGVTTKGIEESPLNQALLKAAEELGYPVEAV  104

Query  214  DFNSGRIMGSQYFALTTTP-ETQERASAANTYLKEFADLPNLTVYTETVAKRILFDDTKT  272
              NS    G  Y         T  + S A T+L+  A   NL + T   A++I+      
Sbjct  105  PRNSN---GCHYCGFCGLGCPTGAKQSTARTWLRP-ALERNLRILTGAKAEKIIILGRGG  160

Query  273  -ATGVVVE-MAGLEHTLAVD-KEVILSAGALQSPQLLMVSGVGPARTLDSLDIPIVHDSP  329
             A GV      G    L    KEV+++AGAL +P LL+ SG+G             H   
Sbjct  161  RAVGVEARDGGGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNP----------HP--  208

Query  330  YVGQNLIDH  338
             VG+NL  H
Sbjct  209  -VGKNLQLH  216



Lambda      K        H        a         alpha
   0.321    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00007394

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  127     1e-35
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  78.9    3e-17


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 127 bits (322),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 55/149 (37%), Positives = 69/149 (46%), Gaps = 12/149 (8%)

Query  365  PVSRGNVTIQSADSRDPPVINTNTLGSATDQQVAIAAFKRLREIFEAPELAPVRLGDEYY  424
            P SRG VT+ S+D    PVI+ N L    D     AA +  R I  A  L    LG E  
Sbjct  1    PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGL---VLGVELT  57

Query  425  PGKHS------VRTDAEILQFIQQNGLAFYHAGSSCAMGDPDAVNSTAVVDSKARVIGIK  478
            PG         V +D E+L +I+      YH   +C MG        AVVD   RV G+ 
Sbjct  58   PGPVPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPD---DAVVDPDLRVHGVD  114

Query  479  GVRVVDAAALPFLPPSHIQSAIYALAEKI  507
             +RVVDA+  P  P  +    IYALAE+ 
Sbjct  115  NLRVVDASVFPSSPSGNPTLTIYALAERA  143


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 78.9 bits (195),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 55/223 (25%), Positives = 82/223 (37%), Gaps = 50/223 (22%)

Query  34   YTRAPVGAFQRWADQVGDQSYAWSEFERFFQKGTNFTAPDPDRRAHNATPGYHPGAFSSG  93
              R P      WA + G + + + ++  +  K                            
Sbjct  38   CIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE--------------------------  71

Query  94   GGPLTVT-YANWASPISSWIQRAMRAVGI-HDAGDFNSGRIMGSQYFALTTTP-ETQERA  150
             GPL VT      SP++  + +A   +G   +A   NS    G  Y         T  + 
Sbjct  72   -GPLGVTTKGIEESPLNQALLKAAEELGYPVEAVPRNSN---GCHYCGFCGLGCPTGAKQ  127

Query  151  SAANTYLKEFADLPNLTVYTETVAKRILFDDTKT-ATGVVVE-MAGLEHTLAVD-KEVIL  207
            S A T+L+  A   NL + T   A++I+       A GV      G    L    KEV++
Sbjct  128  STARTWLRP-ALERNLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKRLITAAKEVVV  186

Query  208  SAGALQSPQLLMVSGVGPARTLDSLDIPIVHDSPYVGQNLIDH  250
            +AGAL +P LL+ SG+G             H    VG+NL  H
Sbjct  187  AAGALNTPPLLLRSGLGKNP----------HP---VGKNLQLH  216



Lambda      K        H        a         alpha
   0.318    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00007395

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  68.5    4e-14


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 68.5 bits (168),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 49/109 (45%), Gaps = 17/109 (16%)

Query  44   ETQERASAANTYLKEFADLPNLTVYTETVAKRILFDDTKT-ATGVVVE-MAGLEHTLAVD  101
             T  + S A T+L+  A   NL + T   A++I+       A GV      G    L   
Sbjct  122  PTGAKQSTARTWLRP-ALERNLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKRLITA  180

Query  102  -KEVILSAGALQSPQLLMVSGVGPARTLDSLDIPIVHDSPYVGQNLIDH  149
             KEV+++AGAL +P LL+ SG+G             H    VG+NL  H
Sbjct  181  AKEVVVAAGALNTPPLLLRSGLGKNP----------HP---VGKNLQLH  216



Lambda      K        H        a         alpha
   0.322    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00007396

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  68.5    4e-14


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 68.5 bits (168),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 49/109 (45%), Gaps = 17/109 (16%)

Query  44   ETQERASAANTYLKEFADLPNLTVYTETVAKRILFDDTKT-ATGVVVE-MAGLEHTLAVD  101
             T  + S A T+L+  A   NL + T   A++I+       A GV      G    L   
Sbjct  122  PTGAKQSTARTWLRP-ALERNLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKRLITA  180

Query  102  -KEVILSAGALQSPQLLMVSGVGPARTLDSLDIPIVHDSPYVGQNLIDH  149
             KEV+++AGAL +P LL+ SG+G             H    VG+NL  H
Sbjct  181  AKEVVVAAGALNTPPLLLRSGLGKNP----------HP---VGKNLQLH  216



Lambda      K        H        a         alpha
   0.322    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00001916

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  127     3e-35
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  93.1    5e-22


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 127 bits (322),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 54/149 (36%), Positives = 69/149 (46%), Gaps = 12/149 (8%)

Query  453  PVSRGNVTIQSADSRDPPVINTNTLGSATDQQVAIAAFKRLREIFEAPELAPVRLGDEYY  512
            P SRG VT+ S+D    PVI+ N L    D     AA +  R I  A     + LG E  
Sbjct  1    PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAA---GLVLGVELT  57

Query  513  PGKHS------VRTDAEILQFIQQNGLAFYHAGSSCAMGDPDAVNSTAVVDSKARVIGIK  566
            PG         V +D E+L +I+      YH   +C MG        AVVD   RV G+ 
Sbjct  58   PGPVPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPD---DAVVDPDLRVHGVD  114

Query  567  GVRVVDAAALPFLPPSHIQSAIYALAEKI  595
             +RVVDA+  P  P  +    IYALAE+ 
Sbjct  115  NLRVVDASVFPSSPSGNPTLTIYALAERA  143


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 93.1 bits (232),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 64/249 (26%), Positives = 92/249 (37%), Gaps = 53/249 (21%)

Query  96   GGRVFGYPRGKCVGGSSARNSQLLRKYTRAPVGAFQRWADQVGDQSYAWSEFERFFQKGT  155
             GR    P G  VGG S+ N        R P      WA + G + + + ++  +  K  
Sbjct  15   NGRRMILPAGSTVGGGSSVNWSA---CIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE  71

Query  156  NFTAPDPDRRAHNATPGYHPGAFSSGGGPLTVT-YANWASPISSWIQRAMRAVGI-HDAG  213
                                       GPL VT      SP++  + +A   +G   +A 
Sbjct  72   ---------------------------GPLGVTTKGIEESPLNQALLKAAEELGYPVEAV  104

Query  214  DFNSGRIMGSQYFALTTTP-ETQERASAANTYLKEFADLPNLTVYTETVAKRILFDDTKT  272
              NS    G  Y         T  + S A T+L+  A   NL + T   A++I+      
Sbjct  105  PRNSN---GCHYCGFCGLGCPTGAKQSTARTWLRP-ALERNLRILTGAKAEKIIILGRGG  160

Query  273  -ATGVVVE-MAGLEHTLAVD-KEVILSAGALQSPQLLMVSGVGPARTLDSLDIPIVHDSP  329
             A GV      G    L    KEV+++AGAL +P LL+ SG+G             H   
Sbjct  161  RAVGVEARDGGGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNP----------HP--  208

Query  330  YVGQNLIDH  338
             VG+NL  H
Sbjct  209  -VGKNLQLH  216



Lambda      K        H        a         alpha
   0.318    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 777102560


Query= TCONS_00001917

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  127     8e-36
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  70.0    2e-14


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 127 bits (320),  Expect = 8e-36, Method: Composition-based stats.
 Identities = 55/149 (37%), Positives = 69/149 (46%), Gaps = 12/149 (8%)

Query  264  PVSRGNVTIQSADSRDPPVINTNTLGSATDQQVAIAAFKRLREIFEAPELAPVRLGDEYY  323
            P SRG VT+ S+D    PVI+ N L    D     AA +  R I  A  L    LG E  
Sbjct  1    PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGL---VLGVELT  57

Query  324  PGKHS------VRTDAEILQFIQQNGLAFYHAGSSCAMGDPDAVNSTAVVDSKARVIGIK  377
            PG         V +D E+L +I+      YH   +C MG        AVVD   RV G+ 
Sbjct  58   PGPVPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPD---DAVVDPDLRVHGVD  114

Query  378  GVRVVDAAALPFLPPSHIQSAIYALAEKI  406
             +RVVDA+  P  P  +    IYALAE+ 
Sbjct  115  NLRVVDASVFPSSPSGNPTLTIYALAERA  143


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 70.0 bits (172),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 49/109 (45%), Gaps = 17/109 (16%)

Query  44   ETQERASAANTYLKEFADLPNLTVYTETVAKRILFDDTKT-ATGVVVE-MAGLEHTLAVD  101
             T  + S A T+L+  A   NL + T   A++I+       A GV      G    L   
Sbjct  122  PTGAKQSTARTWLRP-ALERNLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKRLITA  180

Query  102  -KEVILSAGALQSPQLLMVSGVGPARTLDSLDIPIVHDSPYVGQNLIDH  149
             KEV+++AGAL +P LL+ SG+G             H    VG+NL  H
Sbjct  181  AKEVVVAAGALNTPPLLLRSGLGKNP----------HP---VGKNLQLH  216



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00007397

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  113     1e-30
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  70.0    2e-14


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 113 bits (285),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 69/172 (40%), Gaps = 35/172 (20%)

Query  250  PVSRGNVTIQSADSRDPPVINTNTLGSATDQQVAIAAFKRLREIFEAPELAPVRLGDEYY  309
            P SRG VT+ S+D    PVI+ N L    D     AA +  R I  A     + LG E  
Sbjct  1    PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAA---GLVLGVELT  57

Query  310  PGKHS------VRTDAEILQFIQQNGLAFYHAGSSCAMGDPDAVNSTAVVDSKARVIGIK  363
            PG         V +D E+L +I+      YH   +C MG        AVVD   RV G+ 
Sbjct  58   PGPVPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPD---DAVVDPDLRVHGVD  114

Query  364  GVRVVDAAYVMVSDCTRRDPTLGCGTNSHDRALPFLPPSHIQSAIYALAEKI  415
             +RVVDA+                         P  P  +    IYALAE+ 
Sbjct  115  NLRVVDAS-----------------------VFPSSPSGNPTLTIYALAERA  143


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 70.0 bits (172),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 49/109 (45%), Gaps = 17/109 (16%)

Query  30   ETQERASAANTYLKEFADLPNLTVYTETVAKRILFDDTKT-ATGVVVE-MAGLEHTLAVD  87
             T  + S A T+L+  A   NL + T   A++I+       A GV      G    L   
Sbjct  122  PTGAKQSTARTWLRP-ALERNLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKRLITA  180

Query  88   -KEVILSAGALQSPQLLMVSGVGPARTLDSLDIPIVHDSPYVGQNLIDH  135
             KEV+++AGAL +P LL+ SG+G             H    VG+NL  H
Sbjct  181  AKEVVVAAGALNTPPLLLRSGLGKNP----------HP---VGKNLQLH  216



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00001918

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  107     9e-30


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 107 bits (270),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 49/134 (37%), Positives = 61/134 (46%), Gaps = 12/134 (9%)

Query  147  PVSRGNVTIQSADSRDPPVINTNTLGSATDQQVAIAAFKRLREIFEAPELAPVRLGDEYY  206
            P SRG VT+ S+D    PVI+ N L    D     AA +  R I  A  L    LG E  
Sbjct  1    PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGL---VLGVELT  57

Query  207  PGKHS------VRTDAEILQFIQQNGLAFYHAGSSCAMGDPDAVNSTAVVDSKARVIGIK  260
            PG         V +D E+L +I+      YH   +C MG        AVVD   RV G+ 
Sbjct  58   PGPVPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPD---DAVVDPDLRVHGVD  114

Query  261  GVRVVDAAYLPFLP  274
             +RVVDA+  P  P
Sbjct  115  NLRVVDASVFPSSP  128



Lambda      K        H        a         alpha
   0.319    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00001919

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  127     2e-38


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 127 bits (320),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 55/149 (37%), Positives = 69/149 (46%), Gaps = 12/149 (8%)

Query  30   PVSRGNVTIQSADSRDPPVINTNTLGSATDQQVAIAAFKRLREIFEAPELAPVRLGDEYY  89
            P SRG VT+ S+D    PVI+ N L    D     AA +  R I  A  L    LG E  
Sbjct  1    PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGL---VLGVELT  57

Query  90   PGKHS------VRTDAEILQFIQQNGLAFYHAGSSCAMGDPDAVNSTAVVDSKARVIGIK  143
            PG         V +D E+L +I+      YH   +C MG        AVVD   RV G+ 
Sbjct  58   PGPVPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPD---DAVVDPDLRVHGVD  114

Query  144  GVRVVDAAALPFLPPSHIQSAIYALAEKI  172
             +RVVDA+  P  P  +    IYALAE+ 
Sbjct  115  NLRVVDASVFPSSPSGNPTLTIYALAERA  143



Lambda      K        H        a         alpha
   0.316    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00001920

Length=551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  155     4e-42


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 155 bits (394),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 125/493 (25%), Positives = 201/493 (41%), Gaps = 46/493 (9%)

Query  35   LPLIGDLHSSPIEKPLANWDSWAQQN-GPIAVPKLF-GIIPIVVLNSYEAATELFNRRSQ  92
            LPL G+L     +  L +  +  Q+  GPI   +L+ G  P+VVL+  EA  E+  ++ +
Sbjct  7    LPLFGNLLQLGRKGNLHSVFTKLQKKYGPI--FRLYLGPKPVVVLSGPEAVKEVLIKKGE  64

Query  93   WYSNRPPSVSMEMITGAPPGRSRFTLMHDYDDHLKLHHRILSPSLGALAAPKYQPLMELE  152
             +S RP         G   G+             +   R L+P+  +     ++P +E E
Sbjct  65   EFSGRPDEPWFATSRGPFLGKGIVFA---NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEE  121

Query  153  AKQLLHDLVKALQHSPDGATISTNTIYPLLERTQSSVILALHYGLRIP----HPDERILH  208
            A     DLV+ L+ +          I  LL R   +VI ++ +G R           ++ 
Sbjct  122  A----RDLVEKLRKTAGEP--GVIDITDLLFRAALNVICSILFGERFGSLEDPKFLELVK  175

Query  209  QVIDIQVQVTHLAANPALPDLIPALRHLPAILSPWKRAADRLYAAQVDLYMRLFHHGRDA  268
             V ++   +   + +P L DL P L++ P    P  R   R      DL  +L    R  
Sbjct  176  AVQEL-SSLLS-SPSPQLLDLFPILKYFP---GPHGRKLKRARKKIKDLLDKLIEERR--  228

Query  269  AGWNATKQALSTAAKYAPASSSSSSSSSSSSSSSQIPDLDLAFTLATSIQGGMETSPRQL  328
                   + L +A K       +   +      S++ D +L  T+      G +T+   L
Sbjct  229  -------ETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSSTL  281

Query  329  LWLFIAALHQPSFVTRAHAVLDEVVGRDRLPRFSDRAQLAFIDAVAHELFRWRPIAPGSI  388
             W        P    +    +DEV+G  R P + D   + ++DAV  E  R  P+ P  +
Sbjct  282  SWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLL  341

Query  389  PRRADRDDEFQGVKINKGVTIMANAWGIGRDEQVF-DPALGDLQEFVPERWLRAGEAGEE  447
            PR   +D    G  I KG  ++ N + + RD +VF +P     +EF PER+L       +
Sbjct  342  PREVTKDTVIPGYLIPKGTLVIVNLYALHRDPEVFPNP-----EEFDPERFLDENGKFRK  396

Query  448  RLRSDLPLPVFGQGRRICQGRRVAVDGTFLQVASLLWAFDVAMVDDGAGP-VDPWEMVVV  506
                 LP   FG G R C G R+A     L +A+LL  F+V +      P +D       
Sbjct  397  SFAF-LP---FGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPGTDPPDIDETP----  448

Query  507  GFMTMPKERRFKL  519
            G +  PK  + K 
Sbjct  449  GLLLPPKPYKLKF  461



Lambda      K        H        a         alpha
   0.320    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0734    0.140     1.90     42.6     43.6 

Effective search space used: 685942452


Query= TCONS_00001921

Length=856
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459934 pfam00773, RNB, RNB domain. This domain is the catalyt...  197     3e-57
CDD:436091 pfam17849, OB_Dis3, Dis3-like cold-shock domain 2 (CSD...  117     3e-32


>CDD:459934 pfam00773, RNB, RNB domain.  This domain is the catalytic domain 
of ribonuclease II.
Length=314

 Score = 197 bits (502),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 61/153 (40%), Positives = 97/153 (63%), Gaps = 2/153 (1%)

Query  698  RRDFRSETTFTIDPSGAIELDNAYHIKPLADGKVEIGIHVSDIAHFVKANSLVDREAKKR  757
            R+D R     TIDP+ A +LD+A  ++ L +G   +G+H++D++H+V   S +DREA+KR
Sbjct  1    RKDLRDLPFITIDPADAKDLDDAISVEKLPNGGYRLGVHIADVSHYVPPGSPLDREARKR  60

Query  758  GTAVYLMDRLVNMLPRRVSTELCSLLPEQDRLTVSVVFTANPETGAVDDDVWIGKSIIKS  817
            GT+VYL DR++ MLP ++S +LCSL P +DRL +SV  T +   G V     I  S+I+S
Sbjct  61   GTSVYLPDRVIPMLPEKLSNDLCSLNPGEDRLALSVEITIDA-DGEV-TSYEIYPSVIRS  118

Query  818  AGRLSYDEVNSVIKGETNVSVAGISANIIQTLN  850
              RL+Y+EV+ +++G+         A  ++ L 
Sbjct  119  KARLTYEEVDDLLEGKDAEKDKPDLAEDLRLLY  151


>CDD:436091 pfam17849, OB_Dis3, Dis3-like cold-shock domain 2 (CSD2).  This 
domain has an OB fold and is found in the Dis3l2 protein. 
This domain along with CSD1 binds to RNA.
Length=77

 Score = 117 bits (296),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 34/76 (45%), Positives = 51/76 (67%), Gaps = 0/76 (0%)

Query  591  VWFKPTDKRVPLIAIPTEQAPRDFVEKHQEYANRIFVACIKRWPITSLHPFGTLVEQLGE  650
            V F P DKR+P I IPT+ AP +F+E  ++   ++FV  I  WP  S +P G +V+ LGE
Sbjct  2    VLFVPRDKRIPRIRIPTKSAPEEFLENPEDLEGKLFVVKIDDWPENSRYPLGHIVKVLGE  61

Query  651  MGDLKVETDALLRDNN  666
            +GD++ ET+A+L +N 
Sbjct  62   IGDIETETEAILLENG  77



Lambda      K        H        a         alpha
   0.312    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1092426154


Query= TCONS_00007398

Length=551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  155     4e-42


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 155 bits (394),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 125/493 (25%), Positives = 201/493 (41%), Gaps = 46/493 (9%)

Query  35   LPLIGDLHSSPIEKPLANWDSWAQQN-GPIAVPKLF-GIIPIVVLNSYEAATELFNRRSQ  92
            LPL G+L     +  L +  +  Q+  GPI   +L+ G  P+VVL+  EA  E+  ++ +
Sbjct  7    LPLFGNLLQLGRKGNLHSVFTKLQKKYGPI--FRLYLGPKPVVVLSGPEAVKEVLIKKGE  64

Query  93   WYSNRPPSVSMEMITGAPPGRSRFTLMHDYDDHLKLHHRILSPSLGALAAPKYQPLMELE  152
             +S RP         G   G+             +   R L+P+  +     ++P +E E
Sbjct  65   EFSGRPDEPWFATSRGPFLGKGIVFA---NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEE  121

Query  153  AKQLLHDLVKALQHSPDGATISTNTIYPLLERTQSSVILALHYGLRIP----HPDERILH  208
            A     DLV+ L+ +          I  LL R   +VI ++ +G R           ++ 
Sbjct  122  A----RDLVEKLRKTAGEP--GVIDITDLLFRAALNVICSILFGERFGSLEDPKFLELVK  175

Query  209  QVIDIQVQVTHLAANPALPDLIPALRHLPAILSPWKRAADRLYAAQVDLYMRLFHHGRDA  268
             V ++   +   + +P L DL P L++ P    P  R   R      DL  +L    R  
Sbjct  176  AVQEL-SSLLS-SPSPQLLDLFPILKYFP---GPHGRKLKRARKKIKDLLDKLIEERR--  228

Query  269  AGWNATKQALSTAAKYAPASSSSSSSSSSSSSSSQIPDLDLAFTLATSIQGGMETSPRQL  328
                   + L +A K       +   +      S++ D +L  T+      G +T+   L
Sbjct  229  -------ETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSSTL  281

Query  329  LWLFIAALHQPSFVTRAHAVLDEVVGRDRLPRFSDRAQLAFIDAVAHELFRWRPIAPGSI  388
             W        P    +    +DEV+G  R P + D   + ++DAV  E  R  P+ P  +
Sbjct  282  SWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLL  341

Query  389  PRRADRDDEFQGVKINKGVTIMANAWGIGRDEQVF-DPALGDLQEFVPERWLRAGEAGEE  447
            PR   +D    G  I KG  ++ N + + RD +VF +P     +EF PER+L       +
Sbjct  342  PREVTKDTVIPGYLIPKGTLVIVNLYALHRDPEVFPNP-----EEFDPERFLDENGKFRK  396

Query  448  RLRSDLPLPVFGQGRRICQGRRVAVDGTFLQVASLLWAFDVAMVDDGAGP-VDPWEMVVV  506
                 LP   FG G R C G R+A     L +A+LL  F+V +      P +D       
Sbjct  397  SFAF-LP---FGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPGTDPPDIDETP----  448

Query  507  GFMTMPKERRFKL  519
            G +  PK  + K 
Sbjct  449  GLLLPPKPYKLKF  461



Lambda      K        H        a         alpha
   0.320    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685942452


Query= TCONS_00001922

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  139     2e-40


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 139 bits (352),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 53/140 (38%), Positives = 81/140 (58%), Gaps = 4/140 (3%)

Query  7    RLAADHAALHEELPPNYLFPTEESSDDLTQLTTLLAGPQGTPYSQGLWRLHLKMPEDYPK  66
            RL  +   L ++ PP          D+L +    + GP GTPY  G+++L ++ PEDYP 
Sbjct  1    RLQKELKELLKDPPPGIS--AGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPF  58

Query  67   SPPKATFKTRIWHPNVEESTGAVCVDTLK-RDWKSTLTLKDVLVTISCLLIYPNPDSALN  125
             PPK  F T+I+HPNV+  +G VC+D LK   W   LTL+ VL++I  LL  PNP+  LN
Sbjct  59   KPPKVKFTTKIYHPNVDS-SGEVCLDILKDERWSPALTLEQVLLSIQSLLSEPNPEDPLN  117

Query  126  STAGALLQEDYDAFARQAKL  145
            + A  L +++ + F ++ + 
Sbjct  118  AEAAKLYRKNREEFEKKVRE  137



Lambda      K        H        a         alpha
   0.309    0.126    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00001923

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.125    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00001924

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00007399

Length=302


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.323    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00007400

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462280 pfam07817, GLE1, GLE1-like protein. The members of thi...  107     6e-30


>CDD:462280 pfam07817, GLE1, GLE1-like protein.  The members of this family 
are sequences that are similar to the human protein GLE1. 
This protein is localized at the nuclear pore complexes and 
functions in poly(A)+ RNA export to the cytoplasm.
Length=234

 Score = 107 bits (270),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 9/136 (7%)

Query  10   HMVDILWAKYRVVCPALWGFY----GSEKTEAGRKAIGWWREGPDGPFISEQGHADRMTA  65
             + D+L A++   CP L  FY      + TE  RK +G+ R   DG + +E  + +RM+ 
Sbjct  99   ELGDLLLARFVKKCPYLVPFYPPKTCGQDTEEYRKRLGYKRS-DDGKWETEDKYLERMSG  157

Query  66   LGAGYAALTLRNFGKTPRRNPFPNTMF--WYTMHKILMIPPNEIQETHITLLSAMLKTSV  123
            +   YAA+T     K+ ++NP P+ +   W  + +IL   P  +  T  TLL A L+ + 
Sbjct  158  IIRLYAAITQTPLPKSSKQNPHPHGLPIGWRWLARILNTEP--LSNTTATLLGAFLEVAG  215

Query  124  ERIVGFFGHMGLALIR  139
             R++  +G   + L++
Sbjct  216  NRLLQAYGKQFIKLLQ  231



Lambda      K        H        a         alpha
   0.326    0.140    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00001925

Length=302


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.323    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00007401

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462280 pfam07817, GLE1, GLE1-like protein. The members of thi...  107     6e-30


>CDD:462280 pfam07817, GLE1, GLE1-like protein.  The members of this family 
are sequences that are similar to the human protein GLE1. 
This protein is localized at the nuclear pore complexes and 
functions in poly(A)+ RNA export to the cytoplasm.
Length=234

 Score = 107 bits (270),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 9/136 (7%)

Query  10   HMVDILWAKYRVVCPALWGFY----GSEKTEAGRKAIGWWREGPDGPFISEQGHADRMTA  65
             + D+L A++   CP L  FY      + TE  RK +G+ R   DG + +E  + +RM+ 
Sbjct  99   ELGDLLLARFVKKCPYLVPFYPPKTCGQDTEEYRKRLGYKRS-DDGKWETEDKYLERMSG  157

Query  66   LGAGYAALTLRNFGKTPRRNPFPNTMF--WYTMHKILMIPPNEIQETHITLLSAMLKTSV  123
            +   YAA+T     K+ ++NP P+ +   W  + +IL   P  +  T  TLL A L+ + 
Sbjct  158  IIRLYAAITQTPLPKSSKQNPHPHGLPIGWRWLARILNTEP--LSNTTATLLGAFLEVAG  215

Query  124  ERIVGFFGHMGLALIR  139
             R++  +G   + L++
Sbjct  216  NRLLQAYGKQFIKLLQ  231



Lambda      K        H        a         alpha
   0.326    0.140    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00001927

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462280 pfam07817, GLE1, GLE1-like protein. The members of thi...  107     6e-30


>CDD:462280 pfam07817, GLE1, GLE1-like protein.  The members of this family 
are sequences that are similar to the human protein GLE1. 
This protein is localized at the nuclear pore complexes and 
functions in poly(A)+ RNA export to the cytoplasm.
Length=234

 Score = 107 bits (270),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 9/136 (7%)

Query  10   HMVDILWAKYRVVCPALWGFY----GSEKTEAGRKAIGWWREGPDGPFISEQGHADRMTA  65
             + D+L A++   CP L  FY      + TE  RK +G+ R   DG + +E  + +RM+ 
Sbjct  99   ELGDLLLARFVKKCPYLVPFYPPKTCGQDTEEYRKRLGYKRS-DDGKWETEDKYLERMSG  157

Query  66   LGAGYAALTLRNFGKTPRRNPFPNTMF--WYTMHKILMIPPNEIQETHITLLSAMLKTSV  123
            +   YAA+T     K+ ++NP P+ +   W  + +IL   P  +  T  TLL A L+ + 
Sbjct  158  IIRLYAAITQTPLPKSSKQNPHPHGLPIGWRWLARILNTEP--LSNTTATLLGAFLEVAG  215

Query  124  ERIVGFFGHMGLALIR  139
             R++  +G   + L++
Sbjct  216  NRLLQAYGKQFIKLLQ  231



Lambda      K        H        a         alpha
   0.326    0.140    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00001926

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462280 pfam07817, GLE1, GLE1-like protein. The members of thi...  107     6e-30


>CDD:462280 pfam07817, GLE1, GLE1-like protein.  The members of this family 
are sequences that are similar to the human protein GLE1. 
This protein is localized at the nuclear pore complexes and 
functions in poly(A)+ RNA export to the cytoplasm.
Length=234

 Score = 107 bits (270),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 9/136 (7%)

Query  10   HMVDILWAKYRVVCPALWGFY----GSEKTEAGRKAIGWWREGPDGPFISEQGHADRMTA  65
             + D+L A++   CP L  FY      + TE  RK +G+ R   DG + +E  + +RM+ 
Sbjct  99   ELGDLLLARFVKKCPYLVPFYPPKTCGQDTEEYRKRLGYKRS-DDGKWETEDKYLERMSG  157

Query  66   LGAGYAALTLRNFGKTPRRNPFPNTMF--WYTMHKILMIPPNEIQETHITLLSAMLKTSV  123
            +   YAA+T     K+ ++NP P+ +   W  + +IL   P  +  T  TLL A L+ + 
Sbjct  158  IIRLYAAITQTPLPKSSKQNPHPHGLPIGWRWLARILNTEP--LSNTTATLLGAFLEVAG  215

Query  124  ERIVGFFGHMGLALIR  139
             R++  +G   + L++
Sbjct  216  NRLLQAYGKQFIKLLQ  231



Lambda      K        H        a         alpha
   0.326    0.140    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00001928

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462280 pfam07817, GLE1, GLE1-like protein. The members of thi...  155     1e-44


>CDD:462280 pfam07817, GLE1, GLE1-like protein.  The members of this family 
are sequences that are similar to the human protein GLE1. 
This protein is localized at the nuclear pore complexes and 
functions in poly(A)+ RNA export to the cytoplasm.
Length=234

 Score = 155 bits (395),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 67/261 (26%), Positives = 116/261 (44%), Gaps = 36/261 (14%)

Query  235  KTNPVVKQNMGDIRRSIKKCVGQLREGKGANKTQLQEIRSTLEKAASITEPSVDVRQFFA  294
            K +P +K+    ++R+I   VGQL      +  QL +I + L +     +P         
Sbjct  1    KQDPELKKYRFQLKRAINPKVGQLS----NSSEQLTDITNELNELLDSGKPVPVGHP---  53

Query  295  FPPEDIANSEDNKVPALLIYALNIFSKCLISSLITEASINQGQAEPIGIVAAQIFSMDAF  354
                              I+ LN  +K ++S   TE S+    A P+  VA  ++S    
Sbjct  54   --------------QLAYIWILNFLAKAIVSQAETEVSVKPEAAFPLARVAVGLWSRHP-  98

Query  355  IYKGHHMVDILWAKYRVVCPALWGFY----GSEKTEAGRKAIGWWREGPDGPFISEQGHA  410
                  + D+L A++   CP L  FY      + TE  RK +G+ R   DG + +E  + 
Sbjct  99   -----ELGDLLLARFVKKCPYLVPFYPPKTCGQDTEEYRKRLGYKRS-DDGKWETEDKYL  152

Query  411  DRMTALGAGYAALTLRNFGKTPRRNPFPNTMF--WYTMHKILMIPPNEIQETHITLLSAM  468
            +RM+ +   YAA+T     K+ ++NP P+ +   W  + +IL   P  +  T  TLL A 
Sbjct  153  ERMSGIIRLYAAITQTPLPKSSKQNPHPHGLPIGWRWLARILNTEP--LSNTTATLLGAF  210

Query  469  LKTSVERIVGFFGHMGLALIR  489
            L+ +  R++  +G   + L++
Sbjct  211  LEVAGNRLLQAYGKQFIKLLQ  231



Lambda      K        H        a         alpha
   0.316    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00001929

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462280 pfam07817, GLE1, GLE1-like protein. The members of thi...  107     6e-30


>CDD:462280 pfam07817, GLE1, GLE1-like protein.  The members of this family 
are sequences that are similar to the human protein GLE1. 
This protein is localized at the nuclear pore complexes and 
functions in poly(A)+ RNA export to the cytoplasm.
Length=234

 Score = 107 bits (270),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 9/136 (7%)

Query  10   HMVDILWAKYRVVCPALWGFY----GSEKTEAGRKAIGWWREGPDGPFISEQGHADRMTA  65
             + D+L A++   CP L  FY      + TE  RK +G+ R   DG + +E  + +RM+ 
Sbjct  99   ELGDLLLARFVKKCPYLVPFYPPKTCGQDTEEYRKRLGYKRS-DDGKWETEDKYLERMSG  157

Query  66   LGAGYAALTLRNFGKTPRRNPFPNTMF--WYTMHKILMIPPNEIQETHITLLSAMLKTSV  123
            +   YAA+T     K+ ++NP P+ +   W  + +IL   P  +  T  TLL A L+ + 
Sbjct  158  IIRLYAAITQTPLPKSSKQNPHPHGLPIGWRWLARILNTEP--LSNTTATLLGAFLEVAG  215

Query  124  ERIVGFFGHMGLALIR  139
             R++  +G   + L++
Sbjct  216  NRLLQAYGKQFIKLLQ  231



Lambda      K        H        a         alpha
   0.326    0.140    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00001930

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462280 pfam07817, GLE1, GLE1-like protein. The members of thi...  155     1e-44


>CDD:462280 pfam07817, GLE1, GLE1-like protein.  The members of this family 
are sequences that are similar to the human protein GLE1. 
This protein is localized at the nuclear pore complexes and 
functions in poly(A)+ RNA export to the cytoplasm.
Length=234

 Score = 155 bits (395),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 67/261 (26%), Positives = 116/261 (44%), Gaps = 36/261 (14%)

Query  235  KTNPVVKQNMGDIRRSIKKCVGQLREGKGANKTQLQEIRSTLEKAASITEPSVDVRQFFA  294
            K +P +K+    ++R+I   VGQL      +  QL +I + L +     +P         
Sbjct  1    KQDPELKKYRFQLKRAINPKVGQLS----NSSEQLTDITNELNELLDSGKPVPVGHP---  53

Query  295  FPPEDIANSEDNKVPALLIYALNIFSKCLISSLITEASINQGQAEPIGIVAAQIFSMDAF  354
                              I+ LN  +K ++S   TE S+    A P+  VA  ++S    
Sbjct  54   --------------QLAYIWILNFLAKAIVSQAETEVSVKPEAAFPLARVAVGLWSRHP-  98

Query  355  IYKGHHMVDILWAKYRVVCPALWGFY----GSEKTEAGRKAIGWWREGPDGPFISEQGHA  410
                  + D+L A++   CP L  FY      + TE  RK +G+ R   DG + +E  + 
Sbjct  99   -----ELGDLLLARFVKKCPYLVPFYPPKTCGQDTEEYRKRLGYKRS-DDGKWETEDKYL  152

Query  411  DRMTALGAGYAALTLRNFGKTPRRNPFPNTMF--WYTMHKILMIPPNEIQETHITLLSAM  468
            +RM+ +   YAA+T     K+ ++NP P+ +   W  + +IL   P  +  T  TLL A 
Sbjct  153  ERMSGIIRLYAAITQTPLPKSSKQNPHPHGLPIGWRWLARILNTEP--LSNTTATLLGAF  210

Query  469  LKTSVERIVGFFGHMGLALIR  489
            L+ +  R++  +G   + L++
Sbjct  211  LEVAGNRLLQAYGKQFIKLLQ  231



Lambda      K        H        a         alpha
   0.316    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00001931

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462280 pfam07817, GLE1, GLE1-like protein. The members of thi...  107     6e-30


>CDD:462280 pfam07817, GLE1, GLE1-like protein.  The members of this family 
are sequences that are similar to the human protein GLE1. 
This protein is localized at the nuclear pore complexes and 
functions in poly(A)+ RNA export to the cytoplasm.
Length=234

 Score = 107 bits (270),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 9/136 (7%)

Query  10   HMVDILWAKYRVVCPALWGFY----GSEKTEAGRKAIGWWREGPDGPFISEQGHADRMTA  65
             + D+L A++   CP L  FY      + TE  RK +G+ R   DG + +E  + +RM+ 
Sbjct  99   ELGDLLLARFVKKCPYLVPFYPPKTCGQDTEEYRKRLGYKRS-DDGKWETEDKYLERMSG  157

Query  66   LGAGYAALTLRNFGKTPRRNPFPNTMF--WYTMHKILMIPPNEIQETHITLLSAMLKTSV  123
            +   YAA+T     K+ ++NP P+ +   W  + +IL   P  +  T  TLL A L+ + 
Sbjct  158  IIRLYAAITQTPLPKSSKQNPHPHGLPIGWRWLARILNTEP--LSNTTATLLGAFLEVAG  215

Query  124  ERIVGFFGHMGLALIR  139
             R++  +G   + L++
Sbjct  216  NRLLQAYGKQFIKLLQ  231



Lambda      K        H        a         alpha
   0.326    0.140    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00007402

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00007403

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00001932

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD. M...  180     1e-58


>CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD.  Members 
of this family are implicated in bringing cargo forward from 
the ER and binding to coat proteins by their cytoplasmic domains. 
This domain corresponds closely to the beta-strand rich 
GOLD domain described in. The GOLD domain is always found 
combined with lipid- or membrane-association domains.
Length=181

 Score = 180 bits (459),  Expect = 1e-58, Method: Composition-based stats.
 Identities = 79/186 (42%), Positives = 109/186 (59%), Gaps = 13/186 (7%)

Query  21   GHNIQLKAHSRECFHETLHKDDKMTVTFQVGDREFGGSGNLEIDFWVEDP--LKNRQYFR  78
                +L A  +ECF+E + K   +T ++QV        G L++DF V DP    N  Y +
Sbjct  1    ALTFELPAGEKECFYEEVPKGTLVTGSYQVISG-----GGLDVDFTVTDPDGNGNVIYSK  55

Query  79   QAVSSE-DYSFTAHADGKYVYCFSNEGWTSNSKEVSFNVH-GIVYVPEHELAQ----DPL  132
            +   S  D+SFTA   G+Y +CF N   T +SK VSF++  G       ++A+    DPL
Sbjct  56   KDRKSGGDFSFTATESGEYKFCFDNSFSTFSSKTVSFDIKVGSEAKDYDDVAKKEKLDPL  115

Query  133  EVEVRKLSEALAQVKDEQSYIVVRERVHRNTAESTNARVKWWSIFQLAVLIGEGIFQVWW  192
            E E+RKL + L  +K EQ Y+  RE  HR+T ESTN+RV WWSI QL VL+G  + QV++
Sbjct  116  EEELRKLEDQLNDIKREQKYLREREARHRDTNESTNSRVVWWSIIQLLVLVGVSVLQVYY  175

Query  193  LKRFFE  198
            LKRFFE
Sbjct  176  LKRFFE  181



Lambda      K        H        a         alpha
   0.321    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00001933

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD. M...  180     1e-58


>CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD.  Members 
of this family are implicated in bringing cargo forward from 
the ER and binding to coat proteins by their cytoplasmic domains. 
This domain corresponds closely to the beta-strand rich 
GOLD domain described in. The GOLD domain is always found 
combined with lipid- or membrane-association domains.
Length=181

 Score = 180 bits (459),  Expect = 1e-58, Method: Composition-based stats.
 Identities = 79/186 (42%), Positives = 109/186 (59%), Gaps = 13/186 (7%)

Query  21   GHNIQLKAHSRECFHETLHKDDKMTVTFQVGDREFGGSGNLEIDFWVEDP--LKNRQYFR  78
                +L A  +ECF+E + K   +T ++QV        G L++DF V DP    N  Y +
Sbjct  1    ALTFELPAGEKECFYEEVPKGTLVTGSYQVISG-----GGLDVDFTVTDPDGNGNVIYSK  55

Query  79   QAVSSE-DYSFTAHADGKYVYCFSNEGWTSNSKEVSFNVH-GIVYVPEHELAQ----DPL  132
            +   S  D+SFTA   G+Y +CF N   T +SK VSF++  G       ++A+    DPL
Sbjct  56   KDRKSGGDFSFTATESGEYKFCFDNSFSTFSSKTVSFDIKVGSEAKDYDDVAKKEKLDPL  115

Query  133  EVEVRKLSEALAQVKDEQSYIVVRERVHRNTAESTNARVKWWSIFQLAVLIGEGIFQVWW  192
            E E+RKL + L  +K EQ Y+  RE  HR+T ESTN+RV WWSI QL VL+G  + QV++
Sbjct  116  EEELRKLEDQLNDIKREQKYLREREARHRDTNESTNSRVVWWSIIQLLVLVGVSVLQVYY  175

Query  193  LKRFFE  198
            LKRFFE
Sbjct  176  LKRFFE  181



Lambda      K        H        a         alpha
   0.321    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00007404

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD. M...  180     7e-59


>CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD.  Members 
of this family are implicated in bringing cargo forward from 
the ER and binding to coat proteins by their cytoplasmic domains. 
This domain corresponds closely to the beta-strand rich 
GOLD domain described in. The GOLD domain is always found 
combined with lipid- or membrane-association domains.
Length=181

 Score = 180 bits (460),  Expect = 7e-59, Method: Composition-based stats.
 Identities = 79/186 (42%), Positives = 109/186 (59%), Gaps = 13/186 (7%)

Query  21   GHNIQLKAHSRECFHETLHKDDKMTVTFQVGDREFGGSGNLEIDFWVEDP--LKNRQYFR  78
                +L A  +ECF+E + K   +T ++QV        G L++DF V DP    N  Y +
Sbjct  1    ALTFELPAGEKECFYEEVPKGTLVTGSYQVISG-----GGLDVDFTVTDPDGNGNVIYSK  55

Query  79   QAVSSE-DYSFTAHADGKYVYCFSNEGWTSNSKEVSFNVH-GIVYVPEHELAQ----DPL  132
            +   S  D+SFTA   G+Y +CF N   T +SK VSF++  G       ++A+    DPL
Sbjct  56   KDRKSGGDFSFTATESGEYKFCFDNSFSTFSSKTVSFDIKVGSEAKDYDDVAKKEKLDPL  115

Query  133  EVEVRKLSEALAQVKDEQSYIVVRERVHRNTAESTNARVKWWSIFQLAVLIGEGIFQVWW  192
            E E+RKL + L  +K EQ Y+  RE  HR+T ESTN+RV WWSI QL VL+G  + QV++
Sbjct  116  EEELRKLEDQLNDIKREQKYLREREARHRDTNESTNSRVVWWSIIQLLVLVGVSVLQVYY  175

Query  193  LKRFFE  198
            LKRFFE
Sbjct  176  LKRFFE  181



Lambda      K        H        a         alpha
   0.321    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00001934

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD. M...  176     7e-57


>CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD.  Members 
of this family are implicated in bringing cargo forward from 
the ER and binding to coat proteins by their cytoplasmic domains. 
This domain corresponds closely to the beta-strand rich 
GOLD domain described in. The GOLD domain is always found 
combined with lipid- or membrane-association domains.
Length=181

 Score = 176 bits (449),  Expect = 7e-57, Method: Composition-based stats.
 Identities = 79/192 (41%), Positives = 109/192 (57%), Gaps = 19/192 (10%)

Query  21   GHNIQLKAHSRECFHETLHKDDKMTVTFQVGDREFGGSGNLEIDFWVEDP--LKNRQYFR  78
                +L A  +ECF+E + K   +T ++QV        G L++DF V DP    N  Y +
Sbjct  1    ALTFELPAGEKECFYEEVPKGTLVTGSYQVISG-----GGLDVDFTVTDPDGNGNVIYSK  55

Query  79   QAVSSE-DYSFTAHADGKYVYCFSNEGWTSNSKEVSFNVH-GIVYVPEHELAQ----DPL  132
            +   S  D+SFTA   G+Y +CF N   T +SK VSF++  G       ++A+    DPL
Sbjct  56   KDRKSGGDFSFTATESGEYKFCFDNSFSTFSSKTVSFDIKVGSEAKDYDDVAKKEKLDPL  115

Query  133  EVEANSFFAVRKLSEALAQVKDEQSYIVVRERVHRNTAESTNARVKWWSIFQLAVLIGEG  192
            E E      +RKL + L  +K EQ Y+  RE  HR+T ESTN+RV WWSI QL VL+G  
Sbjct  116  EEE------LRKLEDQLNDIKREQKYLREREARHRDTNESTNSRVVWWSIIQLLVLVGVS  169

Query  193  IFQVWWLKRFFE  204
            + QV++LKRFFE
Sbjct  170  VLQVYYLKRFFE  181



Lambda      K        H        a         alpha
   0.320    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00001935

Length=670


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 850953830


Query= TCONS_00001937

Length=670


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 850953830


Query= TCONS_00001936

Length=670


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 850953830


Query= TCONS_00001938

Length=670


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 850953830


Query= TCONS_00007405

Length=360


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00001939

Length=413


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00007406

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00007407

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00007408

Length=256


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00007409

Length=782
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  62.5    4e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 62.5 bits (152),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 97/275 (35%), Gaps = 39/275 (14%)

Query  261  VNIYLKLDYVTLPILDIQDFRAAYEAVSVAGDSTTPNAFYAILNTIFALACLNVDDM---  317
            ++++ K  +   PIL    F   Y  +     S +  A   +L  I AL  L  +     
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFEL---FSSPSNYASPLLLLAILALGALFSESPTAR  57

Query  318  ----REERARYFFNEGQRLANLFDQYKSIDLLRLYILQ-----VQYLNAIGDLLPTAWAL  368
                  + A    +   R   L  +  S     L+ILQ       Y    GD     W  
Sbjct  58   SSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDR-KLHWRY  116

Query  369  IGSTIRLAQSLRL----PFDAKQHGHSRKERETCRRLWHGAMIMEQIIALRLGIAPQTPD  424
             G  IRLA+SL L     + +       +E E  RRL+     ++++I+L LG  P   D
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSD  176

Query  425  P-LRVPLPTHLDTDYVDVFSSAPSSAPSSSQGERASIIEFFTACARLYRLVEDVMAWEEE  483
              + +PLP   D D +    SA          E    I+      +L +++  +      
Sbjct  177  SDIDLPLPC--DDDDLWESDSADEVTLPLISLES-KSIKPPLFLIKLSKILSKI------  227

Query  484  ARIRPHGCAMKKLLSLDFTRFLKADSLLHDWNQSL  518
                     +  LLS+  T   +   L   W + L
Sbjct  228  ---------LGSLLSIRSTLDQRDLQLKLSWVREL  253



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0748    0.140     1.90     42.6     43.6 

Effective search space used: 1001144576


Query= TCONS_00001942

Length=782
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  62.5    4e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 62.5 bits (152),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 97/275 (35%), Gaps = 39/275 (14%)

Query  261  VNIYLKLDYVTLPILDIQDFRAAYEAVSVAGDSTTPNAFYAILNTIFALACLNVDDM---  317
            ++++ K  +   PIL    F   Y  +     S +  A   +L  I AL  L  +     
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFEL---FSSPSNYASPLLLLAILALGALFSESPTAR  57

Query  318  ----REERARYFFNEGQRLANLFDQYKSIDLLRLYILQ-----VQYLNAIGDLLPTAWAL  368
                  + A    +   R   L  +  S     L+ILQ       Y    GD     W  
Sbjct  58   SSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDR-KLHWRY  116

Query  369  IGSTIRLAQSLRL----PFDAKQHGHSRKERETCRRLWHGAMIMEQIIALRLGIAPQTPD  424
             G  IRLA+SL L     + +       +E E  RRL+     ++++I+L LG  P   D
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSD  176

Query  425  P-LRVPLPTHLDTDYVDVFSSAPSSAPSSSQGERASIIEFFTACARLYRLVEDVMAWEEE  483
              + +PLP   D D +    SA          E    I+      +L +++  +      
Sbjct  177  SDIDLPLPC--DDDDLWESDSADEVTLPLISLES-KSIKPPLFLIKLSKILSKI------  227

Query  484  ARIRPHGCAMKKLLSLDFTRFLKADSLLHDWNQSL  518
                     +  LLS+  T   +   L   W + L
Sbjct  228  ---------LGSLLSIRSTLDQRDLQLKLSWVREL  253



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1001144576


Query= TCONS_00001941

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427247 pfam03328, HpcH_HpaI, HpcH/HpaI aldolase/citrate lyase...  66.6    2e-14


>CDD:427247 pfam03328, HpcH_HpaI, HpcH/HpaI aldolase/citrate lyase family. 
 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid 
aldolase and 4-hydroxy-2-oxovalerate aldolase.
Length=221

 Score = 66.6 bits (163),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 63/151 (42%), Gaps = 35/151 (23%)

Query  28   LPGANH--ARFMARTGYDWICVDTEHG------NIADWQMHEAVA---AIAATGVSPIVR  76
            LPGAN   A   A  G DW+ +D E        + A   +  A+    A+AA     +VR
Sbjct  6    LPGANPAMAEIAAIAGADWVVIDLEDAVALAEKDAARVLVPTALQQLDALAAAPSEVVVR  65

Query  77   IAANE-GWMVK--RALDAGAHGIVVPLLYTADDARRLVESAKFPPVGRRGFGSPFAMGSI  133
            + + +  +  +    LD GA  ++VP + TA+DAR  V + ++PP G R           
Sbjct  66   VNSLDSPFGKQDLAVLDLGAQVVLVPKVETAEDARAAVSAIRYPPKGIR-----------  114

Query  134  GGVSGLEYLQGANDALLTIVQIETKEALENV  164
                       AN     + QIE+   + N 
Sbjct  115  ----------RANGNTCLLAQIESALGVLNA  135



Lambda      K        H        a         alpha
   0.321    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00001940

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427247 pfam03328, HpcH_HpaI, HpcH/HpaI aldolase/citrate lyase...  66.2    2e-14


>CDD:427247 pfam03328, HpcH_HpaI, HpcH/HpaI aldolase/citrate lyase family. 
 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid 
aldolase and 4-hydroxy-2-oxovalerate aldolase.
Length=221

 Score = 66.2 bits (162),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 34/156 (22%)

Query  28   LPGANH--ARFMARTGYDWICVDTEHGNIAVMAMADGGFAADWQMHEAVA---AIAATGV  82
            LPGAN   A   A  G DW+ +D E   +A+                A+    A+AA   
Sbjct  6    LPGANPAMAEIAAIAGADWVVIDLEDA-VALAEKDAARVLV----PTALQQLDALAAAPS  60

Query  83   SPIVRIAANE-GWMVK--RALDAGAHGIVVPLLYTADDARRLVESAKFPPVGRRGFGSPF  139
              +VR+ + +  +  +    LD GA  ++VP + TA+DAR  V + ++PP G R      
Sbjct  61   EVVVRVNSLDSPFGKQDLAVLDLGAQVVLVPKVETAEDARAAVSAIRYPPKGIR------  114

Query  140  AMGSIGGVSGLEYLQGANDALLTIVQIETKEALENV  175
                            AN     + QIE+   + N 
Sbjct  115  ---------------RANGNTCLLAQIESALGVLNA  135



Lambda      K        H        a         alpha
   0.321    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00001943

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase...  159     2e-47


>CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase.  Choline 
kinase catalyzes the committed step in the synthesis of 
phosphatidylcholine by the CDP-choline pathway. This alignment 
covers the protein kinase portion of the protein. The divergence 
of this family makes it very difficult to create a model 
that specifically predicts choline/ethanolamine kinases 
only. However if pfam01633 is also present then it is definitely 
a member of this family.
Length=211

 Score = 159 bits (404),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 115/259 (44%), Gaps = 63/259 (24%)

Query  78   DNEAVLMRAYGNHTEILIDRERETTSHALLASRGLAPSLLARFQNGLLYRFIRGRPATHL  137
                VL+R YG  TE+LI+RE E  + ALL+ RGL P L   F NG +  FI  R  +  
Sbjct  1    SPRKVLLRIYGPGTELLINREDEIVNFALLSERGLGPKLYGFFPNGRIEEFIPSRTLSTE  60

Query  138  DLVKPPLWRGVAQRLGQWHAVLPINGHSASSSSAKELPLSHHVDVDDQHQHEQEDDLDPI  197
            DL  P + + +A+RL + H++              E+P                      
Sbjct  61   DLRDPEISKLIAKRLAELHSL--------------EMPGK--------------------  86

Query  198  KPRVPGPNMWTVLQKWI-LALPTATEEQRTRRRALQ----KELERVVRELDDGRGLGDDG  252
                  P++W  ++KW+ L       E   +   L+    ++LE+ + +L+    L D  
Sbjct  87   ----KSPSLWKTMRKWLSLLKNLGAPESVNKSEQLKSINLEDLEKEINKLEKWLELLDSP  142

Query  253  LVFAHCDLLCANVIILPSQCPATAATSDKEALKVQFIDYEYATPSPAAFDIANHFAEWGG  312
            +VF H DL   N+++L                ++  ID+EYA+ +   FDIANHF EW G
Sbjct  143  IVFCHNDLQSGNILLLNET------------KRLVLIDFEYASYNYRGFDIANHFCEWAG  190

Query  313  --------YNCDYSMMPTR  323
                    + CDYS+ PTR
Sbjct  191  DYHDPTPFFKCDYSLYPTR  209



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00007410

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase...  159     2e-47


>CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase.  Choline 
kinase catalyzes the committed step in the synthesis of 
phosphatidylcholine by the CDP-choline pathway. This alignment 
covers the protein kinase portion of the protein. The divergence 
of this family makes it very difficult to create a model 
that specifically predicts choline/ethanolamine kinases 
only. However if pfam01633 is also present then it is definitely 
a member of this family.
Length=211

 Score = 159 bits (404),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 115/259 (44%), Gaps = 63/259 (24%)

Query  78   DNEAVLMRAYGNHTEILIDRERETTSHALLASRGLAPSLLARFQNGLLYRFIRGRPATHL  137
                VL+R YG  TE+LI+RE E  + ALL+ RGL P L   F NG +  FI  R  +  
Sbjct  1    SPRKVLLRIYGPGTELLINREDEIVNFALLSERGLGPKLYGFFPNGRIEEFIPSRTLSTE  60

Query  138  DLVKPPLWRGVAQRLGQWHAVLPINGHSASSSSAKELPLSHHVDVDDQHQHEQEDDLDPI  197
            DL  P + + +A+RL + H++              E+P                      
Sbjct  61   DLRDPEISKLIAKRLAELHSL--------------EMPGK--------------------  86

Query  198  KPRVPGPNMWTVLQKWI-LALPTATEEQRTRRRALQ----KELERVVRELDDGRGLGDDG  252
                  P++W  ++KW+ L       E   +   L+    ++LE+ + +L+    L D  
Sbjct  87   ----KSPSLWKTMRKWLSLLKNLGAPESVNKSEQLKSINLEDLEKEINKLEKWLELLDSP  142

Query  253  LVFAHCDLLCANVIILPSQCPATAATSDKEALKVQFIDYEYATPSPAAFDIANHFAEWGG  312
            +VF H DL   N+++L                ++  ID+EYA+ +   FDIANHF EW G
Sbjct  143  IVFCHNDLQSGNILLLNET------------KRLVLIDFEYASYNYRGFDIANHFCEWAG  190

Query  313  --------YNCDYSMMPTR  323
                    + CDYS+ PTR
Sbjct  191  DYHDPTPFFKCDYSLYPTR  209



Lambda      K        H        a         alpha
   0.319    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00001944

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase...  159     3e-47


>CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase.  Choline 
kinase catalyzes the committed step in the synthesis of 
phosphatidylcholine by the CDP-choline pathway. This alignment 
covers the protein kinase portion of the protein. The divergence 
of this family makes it very difficult to create a model 
that specifically predicts choline/ethanolamine kinases 
only. However if pfam01633 is also present then it is definitely 
a member of this family.
Length=211

 Score = 159 bits (404),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 115/259 (44%), Gaps = 63/259 (24%)

Query  78   DNEAVLMRAYGNHTEILIDRERETTSHALLASRGLAPSLLARFQNGLLYRFIRGRPATHL  137
                VL+R YG  TE+LI+RE E  + ALL+ RGL P L   F NG +  FI  R  +  
Sbjct  1    SPRKVLLRIYGPGTELLINREDEIVNFALLSERGLGPKLYGFFPNGRIEEFIPSRTLSTE  60

Query  138  DLVKPPLWRGVAQRLGQWHAVLPINGHSASSSSAKELPLSHHVDVDDQHQHEQEDDLDPI  197
            DL  P + + +A+RL + H++              E+P                      
Sbjct  61   DLRDPEISKLIAKRLAELHSL--------------EMPGK--------------------  86

Query  198  KPRVPGPNMWTVLQKWI-LALPTATEEQRTRRRALQ----KELERVVRELDDGRGLGDDG  252
                  P++W  ++KW+ L       E   +   L+    ++LE+ + +L+    L D  
Sbjct  87   ----KSPSLWKTMRKWLSLLKNLGAPESVNKSEQLKSINLEDLEKEINKLEKWLELLDSP  142

Query  253  LVFAHCDLLCANVIILPSQCPATAATSDKEALKVQFIDYEYATPSPAAFDIANHFAEWGG  312
            +VF H DL   N+++L                ++  ID+EYA+ +   FDIANHF EW G
Sbjct  143  IVFCHNDLQSGNILLLNET------------KRLVLIDFEYASYNYRGFDIANHFCEWAG  190

Query  313  --------YNCDYSMMPTR  323
                    + CDYS+ PTR
Sbjct  191  DYHDPTPFFKCDYSLYPTR  209



Lambda      K        H        a         alpha
   0.320    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00001945

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase...  159     3e-47


>CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase.  Choline 
kinase catalyzes the committed step in the synthesis of 
phosphatidylcholine by the CDP-choline pathway. This alignment 
covers the protein kinase portion of the protein. The divergence 
of this family makes it very difficult to create a model 
that specifically predicts choline/ethanolamine kinases 
only. However if pfam01633 is also present then it is definitely 
a member of this family.
Length=211

 Score = 159 bits (404),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 115/259 (44%), Gaps = 63/259 (24%)

Query  78   DNEAVLMRAYGNHTEILIDRERETTSHALLASRGLAPSLLARFQNGLLYRFIRGRPATHL  137
                VL+R YG  TE+LI+RE E  + ALL+ RGL P L   F NG +  FI  R  +  
Sbjct  1    SPRKVLLRIYGPGTELLINREDEIVNFALLSERGLGPKLYGFFPNGRIEEFIPSRTLSTE  60

Query  138  DLVKPPLWRGVAQRLGQWHAVLPINGHSASSSSAKELPLSHHVDVDDQHQHEQEDDLDPI  197
            DL  P + + +A+RL + H++              E+P                      
Sbjct  61   DLRDPEISKLIAKRLAELHSL--------------EMPGK--------------------  86

Query  198  KPRVPGPNMWTVLQKWI-LALPTATEEQRTRRRALQ----KELERVVRELDDGRGLGDDG  252
                  P++W  ++KW+ L       E   +   L+    ++LE+ + +L+    L D  
Sbjct  87   ----KSPSLWKTMRKWLSLLKNLGAPESVNKSEQLKSINLEDLEKEINKLEKWLELLDSP  142

Query  253  LVFAHCDLLCANVIILPSQCPATAATSDKEALKVQFIDYEYATPSPAAFDIANHFAEWGG  312
            +VF H DL   N+++L                ++  ID+EYA+ +   FDIANHF EW G
Sbjct  143  IVFCHNDLQSGNILLLNET------------KRLVLIDFEYASYNYRGFDIANHFCEWAG  190

Query  313  --------YNCDYSMMPTR  323
                    + CDYS+ PTR
Sbjct  191  DYHDPTPFFKCDYSLYPTR  209



Lambda      K        H        a         alpha
   0.320    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00007412

Length=782
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  62.5    4e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 62.5 bits (152),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 97/275 (35%), Gaps = 39/275 (14%)

Query  261  VNIYLKLDYVTLPILDIQDFRAAYEAVSVAGDSTTPNAFYAILNTIFALACLNVDDM---  317
            ++++ K  +   PIL    F   Y  +     S +  A   +L  I AL  L  +     
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFEL---FSSPSNYASPLLLLAILALGALFSESPTAR  57

Query  318  ----REERARYFFNEGQRLANLFDQYKSIDLLRLYILQ-----VQYLNAIGDLLPTAWAL  368
                  + A    +   R   L  +  S     L+ILQ       Y    GD     W  
Sbjct  58   SSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDR-KLHWRY  116

Query  369  IGSTIRLAQSLRL----PFDAKQHGHSRKERETCRRLWHGAMIMEQIIALRLGIAPQTPD  424
             G  IRLA+SL L     + +       +E E  RRL+     ++++I+L LG  P   D
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSD  176

Query  425  P-LRVPLPTHLDTDYVDVFSSAPSSAPSSSQGERASIIEFFTACARLYRLVEDVMAWEEE  483
              + +PLP   D D +    SA          E    I+      +L +++  +      
Sbjct  177  SDIDLPLPC--DDDDLWESDSADEVTLPLISLES-KSIKPPLFLIKLSKILSKI------  227

Query  484  ARIRPHGCAMKKLLSLDFTRFLKADSLLHDWNQSL  518
                     +  LLS+  T   +   L   W + L
Sbjct  228  ---------LGSLLSIRSTLDQRDLQLKLSWVREL  253



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1001144576


Query= TCONS_00007411

Length=782
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  62.5    4e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 62.5 bits (152),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 97/275 (35%), Gaps = 39/275 (14%)

Query  261  VNIYLKLDYVTLPILDIQDFRAAYEAVSVAGDSTTPNAFYAILNTIFALACLNVDDM---  317
            ++++ K  +   PIL    F   Y  +     S +  A   +L  I AL  L  +     
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFEL---FSSPSNYASPLLLLAILALGALFSESPTAR  57

Query  318  ----REERARYFFNEGQRLANLFDQYKSIDLLRLYILQ-----VQYLNAIGDLLPTAWAL  368
                  + A    +   R   L  +  S     L+ILQ       Y    GD     W  
Sbjct  58   SSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDR-KLHWRY  116

Query  369  IGSTIRLAQSLRL----PFDAKQHGHSRKERETCRRLWHGAMIMEQIIALRLGIAPQTPD  424
             G  IRLA+SL L     + +       +E E  RRL+     ++++I+L LG  P   D
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSD  176

Query  425  P-LRVPLPTHLDTDYVDVFSSAPSSAPSSSQGERASIIEFFTACARLYRLVEDVMAWEEE  483
              + +PLP   D D +    SA          E    I+      +L +++  +      
Sbjct  177  SDIDLPLPC--DDDDLWESDSADEVTLPLISLES-KSIKPPLFLIKLSKILSKI------  227

Query  484  ARIRPHGCAMKKLLSLDFTRFLKADSLLHDWNQSL  518
                     +  LLS+  T   +   L   W + L
Sbjct  228  ---------LGSLLSIRSTLDQRDLQLKLSWVREL  253



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1001144576


Query= TCONS_00001946

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase...  159     3e-47


>CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase.  Choline 
kinase catalyzes the committed step in the synthesis of 
phosphatidylcholine by the CDP-choline pathway. This alignment 
covers the protein kinase portion of the protein. The divergence 
of this family makes it very difficult to create a model 
that specifically predicts choline/ethanolamine kinases 
only. However if pfam01633 is also present then it is definitely 
a member of this family.
Length=211

 Score = 159 bits (404),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 115/259 (44%), Gaps = 63/259 (24%)

Query  78   DNEAVLMRAYGNHTEILIDRERETTSHALLASRGLAPSLLARFQNGLLYRFIRGRPATHL  137
                VL+R YG  TE+LI+RE E  + ALL+ RGL P L   F NG +  FI  R  +  
Sbjct  1    SPRKVLLRIYGPGTELLINREDEIVNFALLSERGLGPKLYGFFPNGRIEEFIPSRTLSTE  60

Query  138  DLVKPPLWRGVAQRLGQWHAVLPINGHSASSSSAKELPLSHHVDVDDQHQHEQEDDLDPI  197
            DL  P + + +A+RL + H++              E+P                      
Sbjct  61   DLRDPEISKLIAKRLAELHSL--------------EMPGK--------------------  86

Query  198  KPRVPGPNMWTVLQKWI-LALPTATEEQRTRRRALQ----KELERVVRELDDGRGLGDDG  252
                  P++W  ++KW+ L       E   +   L+    ++LE+ + +L+    L D  
Sbjct  87   ----KSPSLWKTMRKWLSLLKNLGAPESVNKSEQLKSINLEDLEKEINKLEKWLELLDSP  142

Query  253  LVFAHCDLLCANVIILPSQCPATAATSDKEALKVQFIDYEYATPSPAAFDIANHFAEWGG  312
            +VF H DL   N+++L                ++  ID+EYA+ +   FDIANHF EW G
Sbjct  143  IVFCHNDLQSGNILLLNET------------KRLVLIDFEYASYNYRGFDIANHFCEWAG  190

Query  313  --------YNCDYSMMPTR  323
                    + CDYS+ PTR
Sbjct  191  DYHDPTPFFKCDYSLYPTR  209



Lambda      K        H        a         alpha
   0.320    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00001947

Length=741
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  63.3    2e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 63.3 bits (154),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 62/275 (23%), Positives = 96/275 (35%), Gaps = 39/275 (14%)

Query  220  VNIYLKLDYVTLPILDIQDFRAAYEAVSVAGDSTTPNAFYAILNTIFALACLNVDDM---  276
            ++++ K  +   PIL    F   Y  +     S +  A   +L  I AL  L  +     
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFEL---FSSPSNYASPLLLLAILALGALFSESPTAR  57

Query  277  ----REERARYFFNEGQRLANLFDQYKSIDLLRLYILQ-----VQYLNAIGDLLPTAWAL  327
                  + A    +   R   L  +  S     L+ILQ       Y    GD     W  
Sbjct  58   SSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDR-KLHWRY  116

Query  328  IGSTIRLAQSLRL---PFDAKQHG-HSRKERETCRRLWHGAMIMEQIIALRLGIAPQTPD  383
             G  IRLA+SL L   P           +E E  RRL+     ++++I+L LG  P   D
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSD  176

Query  384  P-LRVPLPTHLDTDYVDVFSSAPSSAPSSSQGERASIIEFFTACARLYRLVEDVMAWEEE  442
              + +PLP   D D +    SA          E    I+      +L +++  +      
Sbjct  177  SDIDLPLPC--DDDDLWESDSADEVTLPLISLES-KSIKPPLFLIKLSKILSKI------  227

Query  443  ARIRPHGCAMKKLLSLDFTRFLKADSLLHDWNQSL  477
                     +  LLS+  T   +   L   W + L
Sbjct  228  ---------LGSLLSIRSTLDQRDLQLKLSWVREL  253



Lambda      K        H        a         alpha
   0.320    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 941483344


Query= TCONS_00001948

Length=739
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  61.7    7e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 61.7 bits (150),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 97/275 (35%), Gaps = 39/275 (14%)

Query  218  VNIYLKLDYVTLPILDIQDFRAAYEAVSVAGDSTTPNAFYAILNTIFALACLNVDDM---  274
            ++++ K  +   PIL    F   Y  +     S +  A   +L  I AL  L  +     
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFEL---FSSPSNYASPLLLLAILALGALFSESPTAR  57

Query  275  ----REERARYFFNEGQRLANLFDQYKSIDLLRLYILQ-----VQYLNAIGDLLPTAWAL  325
                  + A    +   R   L  +  S     L+ILQ       Y    GD     W  
Sbjct  58   SSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDR-KLHWRY  116

Query  326  IGSTIRLAQSLRL----PFDAKQHGHSRKERETCRRLWHGAMIMEQIIALRLGIAPQTPD  381
             G  IRLA+SL L     + +       +E E  RRL+     ++++I+L LG  P   D
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSD  176

Query  382  P-LRVPLPTHLDTDYVDVFSSAPSSAPSSSQGERASIIEFFTACARLYRLVEDVMAWEEE  440
              + +PLP   D D +    SA          E    I+      +L +++  +      
Sbjct  177  SDIDLPLPC--DDDDLWESDSADEVTLPLISLES-KSIKPPLFLIKLSKILSKI------  227

Query  441  ARIRPHGCAMKKLLSLDFTRFLKADSLLHDWNQSL  475
                     +  LLS+  T   +   L   W + L
Sbjct  228  ---------LGSLLSIRSTLDQRDLQLKLSWVREL  253



Lambda      K        H        a         alpha
   0.320    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 938573040


Query= TCONS_00007415

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase...  159     2e-47


>CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase.  Choline 
kinase catalyzes the committed step in the synthesis of 
phosphatidylcholine by the CDP-choline pathway. This alignment 
covers the protein kinase portion of the protein. The divergence 
of this family makes it very difficult to create a model 
that specifically predicts choline/ethanolamine kinases 
only. However if pfam01633 is also present then it is definitely 
a member of this family.
Length=211

 Score = 159 bits (404),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 115/259 (44%), Gaps = 63/259 (24%)

Query  78   DNEAVLMRAYGNHTEILIDRERETTSHALLASRGLAPSLLARFQNGLLYRFIRGRPATHL  137
                VL+R YG  TE+LI+RE E  + ALL+ RGL P L   F NG +  FI  R  +  
Sbjct  1    SPRKVLLRIYGPGTELLINREDEIVNFALLSERGLGPKLYGFFPNGRIEEFIPSRTLSTE  60

Query  138  DLVKPPLWRGVAQRLGQWHAVLPINGHSASSSSAKELPLSHHVDVDDQHQHEQEDDLDPI  197
            DL  P + + +A+RL + H++              E+P                      
Sbjct  61   DLRDPEISKLIAKRLAELHSL--------------EMPGK--------------------  86

Query  198  KPRVPGPNMWTVLQKWI-LALPTATEEQRTRRRALQ----KELERVVRELDDGRGLGDDG  252
                  P++W  ++KW+ L       E   +   L+    ++LE+ + +L+    L D  
Sbjct  87   ----KSPSLWKTMRKWLSLLKNLGAPESVNKSEQLKSINLEDLEKEINKLEKWLELLDSP  142

Query  253  LVFAHCDLLCANVIILPSQCPATAATSDKEALKVQFIDYEYATPSPAAFDIANHFAEWGG  312
            +VF H DL   N+++L                ++  ID+EYA+ +   FDIANHF EW G
Sbjct  143  IVFCHNDLQSGNILLLNET------------KRLVLIDFEYASYNYRGFDIANHFCEWAG  190

Query  313  --------YNCDYSMMPTR  323
                    + CDYS+ PTR
Sbjct  191  DYHDPTPFFKCDYSLYPTR  209



Lambda      K        H        a         alpha
   0.319    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00001949

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427247 pfam03328, HpcH_HpaI, HpcH/HpaI aldolase/citrate lyase...  102     3e-27


>CDD:427247 pfam03328, HpcH_HpaI, HpcH/HpaI aldolase/citrate lyase family. 
 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid 
aldolase and 4-hydroxy-2-oxovalerate aldolase.
Length=221

 Score = 102 bits (256),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 64/230 (28%), Positives = 98/230 (43%), Gaps = 45/230 (20%)

Query  28   LPGANH--ARFMARTGYDWICVDTEHG------NIADWQMHEAVA---AIAATGVSPIVR  76
            LPGAN   A   A  G DW+ +D E        + A   +  A+    A+AA     +VR
Sbjct  6    LPGANPAMAEIAAIAGADWVVIDLEDAVALAEKDAARVLVPTALQQLDALAAAPSEVVVR  65

Query  77   IAANE-GWMVK--RALDAGAHGIVVPLLYTADDARRLVESAKFPPVGRRGFGSPFAMGSI  133
            + + +  +  +    LD GA  ++VP + TA+DAR  V + ++PP G R           
Sbjct  66   VNSLDSPFGKQDLAVLDLGAQVVLVPKVETAEDARAAVSAIRYPPKGIRR----------  115

Query  134  GGVSGLEYLQGANDALLTIVQIETKEALENVEEIAKVPGIDVLFVGPWDLGNNIGRPVTG  193
                       AN     + QIE+   + N +EIA V G+D +F+G  DL  ++G   + 
Sbjct  116  -----------ANGNTCLLAQIESALGVLNADEIAAVEGVDGIFLGAEDLSADLGTLRSP  164

Query  194  AFHEDLEAAIERIRKAAVDNGKRAGIYCVGGAA-----AKKYADRGFHMV  238
                ++  A ERI  AA    + AGI            A+ +   G   V
Sbjct  165  G-GPEVLYARERIVTAA----RAAGIAAFDTVYSDENDAEGFLAEGALFV  209



Lambda      K        H        a         alpha
   0.321    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00007416

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase...  159     3e-47


>CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase.  Choline 
kinase catalyzes the committed step in the synthesis of 
phosphatidylcholine by the CDP-choline pathway. This alignment 
covers the protein kinase portion of the protein. The divergence 
of this family makes it very difficult to create a model 
that specifically predicts choline/ethanolamine kinases 
only. However if pfam01633 is also present then it is definitely 
a member of this family.
Length=211

 Score = 159 bits (404),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 115/259 (44%), Gaps = 63/259 (24%)

Query  78   DNEAVLMRAYGNHTEILIDRERETTSHALLASRGLAPSLLARFQNGLLYRFIRGRPATHL  137
                VL+R YG  TE+LI+RE E  + ALL+ RGL P L   F NG +  FI  R  +  
Sbjct  1    SPRKVLLRIYGPGTELLINREDEIVNFALLSERGLGPKLYGFFPNGRIEEFIPSRTLSTE  60

Query  138  DLVKPPLWRGVAQRLGQWHAVLPINGHSASSSSAKELPLSHHVDVDDQHQHEQEDDLDPI  197
            DL  P + + +A+RL + H++              E+P                      
Sbjct  61   DLRDPEISKLIAKRLAELHSL--------------EMPGK--------------------  86

Query  198  KPRVPGPNMWTVLQKWI-LALPTATEEQRTRRRALQ----KELERVVRELDDGRGLGDDG  252
                  P++W  ++KW+ L       E   +   L+    ++LE+ + +L+    L D  
Sbjct  87   ----KSPSLWKTMRKWLSLLKNLGAPESVNKSEQLKSINLEDLEKEINKLEKWLELLDSP  142

Query  253  LVFAHCDLLCANVIILPSQCPATAATSDKEALKVQFIDYEYATPSPAAFDIANHFAEWGG  312
            +VF H DL   N+++L                ++  ID+EYA+ +   FDIANHF EW G
Sbjct  143  IVFCHNDLQSGNILLLNET------------KRLVLIDFEYASYNYRGFDIANHFCEWAG  190

Query  313  --------YNCDYSMMPTR  323
                    + CDYS+ PTR
Sbjct  191  DYHDPTPFFKCDYSLYPTR  209



Lambda      K        H        a         alpha
   0.320    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00001951

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase...  159     3e-47


>CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase.  Choline 
kinase catalyzes the committed step in the synthesis of 
phosphatidylcholine by the CDP-choline pathway. This alignment 
covers the protein kinase portion of the protein. The divergence 
of this family makes it very difficult to create a model 
that specifically predicts choline/ethanolamine kinases 
only. However if pfam01633 is also present then it is definitely 
a member of this family.
Length=211

 Score = 159 bits (404),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 115/259 (44%), Gaps = 63/259 (24%)

Query  78   DNEAVLMRAYGNHTEILIDRERETTSHALLASRGLAPSLLARFQNGLLYRFIRGRPATHL  137
                VL+R YG  TE+LI+RE E  + ALL+ RGL P L   F NG +  FI  R  +  
Sbjct  1    SPRKVLLRIYGPGTELLINREDEIVNFALLSERGLGPKLYGFFPNGRIEEFIPSRTLSTE  60

Query  138  DLVKPPLWRGVAQRLGQWHAVLPINGHSASSSSAKELPLSHHVDVDDQHQHEQEDDLDPI  197
            DL  P + + +A+RL + H++              E+P                      
Sbjct  61   DLRDPEISKLIAKRLAELHSL--------------EMPGK--------------------  86

Query  198  KPRVPGPNMWTVLQKWI-LALPTATEEQRTRRRALQ----KELERVVRELDDGRGLGDDG  252
                  P++W  ++KW+ L       E   +   L+    ++LE+ + +L+    L D  
Sbjct  87   ----KSPSLWKTMRKWLSLLKNLGAPESVNKSEQLKSINLEDLEKEINKLEKWLELLDSP  142

Query  253  LVFAHCDLLCANVIILPSQCPATAATSDKEALKVQFIDYEYATPSPAAFDIANHFAEWGG  312
            +VF H DL   N+++L                ++  ID+EYA+ +   FDIANHF EW G
Sbjct  143  IVFCHNDLQSGNILLLNET------------KRLVLIDFEYASYNYRGFDIANHFCEWAG  190

Query  313  --------YNCDYSMMPTR  323
                    + CDYS+ PTR
Sbjct  191  DYHDPTPFFKCDYSLYPTR  209



Lambda      K        H        a         alpha
   0.320    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00007417

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase...  159     3e-47


>CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase.  Choline 
kinase catalyzes the committed step in the synthesis of 
phosphatidylcholine by the CDP-choline pathway. This alignment 
covers the protein kinase portion of the protein. The divergence 
of this family makes it very difficult to create a model 
that specifically predicts choline/ethanolamine kinases 
only. However if pfam01633 is also present then it is definitely 
a member of this family.
Length=211

 Score = 159 bits (404),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 115/259 (44%), Gaps = 63/259 (24%)

Query  78   DNEAVLMRAYGNHTEILIDRERETTSHALLASRGLAPSLLARFQNGLLYRFIRGRPATHL  137
                VL+R YG  TE+LI+RE E  + ALL+ RGL P L   F NG +  FI  R  +  
Sbjct  1    SPRKVLLRIYGPGTELLINREDEIVNFALLSERGLGPKLYGFFPNGRIEEFIPSRTLSTE  60

Query  138  DLVKPPLWRGVAQRLGQWHAVLPINGHSASSSSAKELPLSHHVDVDDQHQHEQEDDLDPI  197
            DL  P + + +A+RL + H++              E+P                      
Sbjct  61   DLRDPEISKLIAKRLAELHSL--------------EMPGK--------------------  86

Query  198  KPRVPGPNMWTVLQKWI-LALPTATEEQRTRRRALQ----KELERVVRELDDGRGLGDDG  252
                  P++W  ++KW+ L       E   +   L+    ++LE+ + +L+    L D  
Sbjct  87   ----KSPSLWKTMRKWLSLLKNLGAPESVNKSEQLKSINLEDLEKEINKLEKWLELLDSP  142

Query  253  LVFAHCDLLCANVIILPSQCPATAATSDKEALKVQFIDYEYATPSPAAFDIANHFAEWGG  312
            +VF H DL   N+++L                ++  ID+EYA+ +   FDIANHF EW G
Sbjct  143  IVFCHNDLQSGNILLLNET------------KRLVLIDFEYASYNYRGFDIANHFCEWAG  190

Query  313  --------YNCDYSMMPTR  323
                    + CDYS+ PTR
Sbjct  191  DYHDPTPFFKCDYSLYPTR  209



Lambda      K        H        a         alpha
   0.320    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00007418

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase...  159     1e-47


>CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase.  Choline 
kinase catalyzes the committed step in the synthesis of 
phosphatidylcholine by the CDP-choline pathway. This alignment 
covers the protein kinase portion of the protein. The divergence 
of this family makes it very difficult to create a model 
that specifically predicts choline/ethanolamine kinases 
only. However if pfam01633 is also present then it is definitely 
a member of this family.
Length=211

 Score = 159 bits (404),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 115/259 (44%), Gaps = 63/259 (24%)

Query  78   DNEAVLMRAYGNHTEILIDRERETTSHALLASRGLAPSLLARFQNGLLYRFIRGRPATHL  137
                VL+R YG  TE+LI+RE E  + ALL+ RGL P L   F NG +  FI  R  +  
Sbjct  1    SPRKVLLRIYGPGTELLINREDEIVNFALLSERGLGPKLYGFFPNGRIEEFIPSRTLSTE  60

Query  138  DLVKPPLWRGVAQRLGQWHAVLPINGHSASSSSAKELPLSHHVDVDDQHQHEQEDDLDPI  197
            DL  P + + +A+RL + H++              E+P                      
Sbjct  61   DLRDPEISKLIAKRLAELHSL--------------EMPGK--------------------  86

Query  198  KPRVPGPNMWTVLQKWI-LALPTATEEQRTRRRALQ----KELERVVRELDDGRGLGDDG  252
                  P++W  ++KW+ L       E   +   L+    ++LE+ + +L+    L D  
Sbjct  87   ----KSPSLWKTMRKWLSLLKNLGAPESVNKSEQLKSINLEDLEKEINKLEKWLELLDSP  142

Query  253  LVFAHCDLLCANVIILPSQCPATAATSDKEALKVQFIDYEYATPSPAAFDIANHFAEWGG  312
            +VF H DL   N+++L                ++  ID+EYA+ +   FDIANHF EW G
Sbjct  143  IVFCHNDLQSGNILLLNET------------KRLVLIDFEYASYNYRGFDIANHFCEWAG  190

Query  313  --------YNCDYSMMPTR  323
                    + CDYS+ PTR
Sbjct  191  DYHDPTPFFKCDYSLYPTR  209



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00001952

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427247 pfam03328, HpcH_HpaI, HpcH/HpaI aldolase/citrate lyase...  101     1e-26


>CDD:427247 pfam03328, HpcH_HpaI, HpcH/HpaI aldolase/citrate lyase family. 
 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid 
aldolase and 4-hydroxy-2-oxovalerate aldolase.
Length=221

 Score = 101 bits (254),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 100/232 (43%), Gaps = 45/232 (19%)

Query  28   LPGANH--ARFMARTGYDWICVDTEHG------NIADWQMHEAVA---AIAATGVSPIVR  76
            LPGAN   A   A  G DW+ +D E        + A   +  A+    A+AA     +VR
Sbjct  6    LPGANPAMAEIAAIAGADWVVIDLEDAVALAEKDAARVLVPTALQQLDALAAAPSEVVVR  65

Query  77   IAANE-GWMVK--RALDAGAHGIVVPLLYTADDARRLVESAKFPPVGRRGFGSPFAMGSI  133
            + + +  +  +    LD GA  ++VP + TA+DAR  V + ++PP G R           
Sbjct  66   VNSLDSPFGKQDLAVLDLGAQVVLVPKVETAEDARAAVSAIRYPPKGIRR----------  115

Query  134  GGVSGLEYLQGANDALLTIVQIETKEALENVEEIAKVPGIDVLFVGPWDLGNNIGRPVTG  193
                       AN     + QIE+   + N +EIA V G+D +F+G  DL  ++G   + 
Sbjct  116  -----------ANGNTCLLAQIESALGVLNADEIAAVEGVDGIFLGAEDLSADLGTLRSP  164

Query  194  AFHEDLEAAIERIRKAAVDNGKRAGIYCVGGAA-----AKKYADRGFHMISV  240
                ++  A ERI  AA    + AGI            A+ +   G   +++
Sbjct  165  G-GPEVLYARERIVTAA----RAAGIAAFDTVYSDENDAEGFLAEGALFVAL  211



Lambda      K        H        a         alpha
   0.320    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00007419

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase...  159     3e-47


>CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase.  Choline 
kinase catalyzes the committed step in the synthesis of 
phosphatidylcholine by the CDP-choline pathway. This alignment 
covers the protein kinase portion of the protein. The divergence 
of this family makes it very difficult to create a model 
that specifically predicts choline/ethanolamine kinases 
only. However if pfam01633 is also present then it is definitely 
a member of this family.
Length=211

 Score = 159 bits (404),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 115/259 (44%), Gaps = 63/259 (24%)

Query  78   DNEAVLMRAYGNHTEILIDRERETTSHALLASRGLAPSLLARFQNGLLYRFIRGRPATHL  137
                VL+R YG  TE+LI+RE E  + ALL+ RGL P L   F NG +  FI  R  +  
Sbjct  1    SPRKVLLRIYGPGTELLINREDEIVNFALLSERGLGPKLYGFFPNGRIEEFIPSRTLSTE  60

Query  138  DLVKPPLWRGVAQRLGQWHAVLPINGHSASSSSAKELPLSHHVDVDDQHQHEQEDDLDPI  197
            DL  P + + +A+RL + H++              E+P                      
Sbjct  61   DLRDPEISKLIAKRLAELHSL--------------EMPGK--------------------  86

Query  198  KPRVPGPNMWTVLQKWI-LALPTATEEQRTRRRALQ----KELERVVRELDDGRGLGDDG  252
                  P++W  ++KW+ L       E   +   L+    ++LE+ + +L+    L D  
Sbjct  87   ----KSPSLWKTMRKWLSLLKNLGAPESVNKSEQLKSINLEDLEKEINKLEKWLELLDSP  142

Query  253  LVFAHCDLLCANVIILPSQCPATAATSDKEALKVQFIDYEYATPSPAAFDIANHFAEWGG  312
            +VF H DL   N+++L                ++  ID+EYA+ +   FDIANHF EW G
Sbjct  143  IVFCHNDLQSGNILLLNET------------KRLVLIDFEYASYNYRGFDIANHFCEWAG  190

Query  313  --------YNCDYSMMPTR  323
                    + CDYS+ PTR
Sbjct  191  DYHDPTPFFKCDYSLYPTR  209



Lambda      K        H        a         alpha
   0.320    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00001953

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427247 pfam03328, HpcH_HpaI, HpcH/HpaI aldolase/citrate lyase...  101     2e-26


>CDD:427247 pfam03328, HpcH_HpaI, HpcH/HpaI aldolase/citrate lyase family. 
 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid 
aldolase and 4-hydroxy-2-oxovalerate aldolase.
Length=221

 Score = 101 bits (254),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 63/237 (27%), Positives = 100/237 (42%), Gaps = 44/237 (19%)

Query  28   LPGANH--ARFMARTGYDWICVDTEHGNIAVMAMADGGFAADWQMHEAVA---AIAATGV  82
            LPGAN   A   A  G DW+ +D E   +A+                A+    A+AA   
Sbjct  6    LPGANPAMAEIAAIAGADWVVIDLEDA-VALAEKDAARVLV----PTALQQLDALAAAPS  60

Query  83   SPIVRIAANE-GWMVK--RALDAGAHGIVVPLLYTADDARRLVESAKFPPVGRRGFGSPF  139
              +VR+ + +  +  +    LD GA  ++VP + TA+DAR  V + ++PP G R      
Sbjct  61   EVVVRVNSLDSPFGKQDLAVLDLGAQVVLVPKVETAEDARAAVSAIRYPPKGIRR-----  115

Query  140  AMGSIGGVSGLEYLQGANDALLTIVQIETKEALENVEEIAKVPGIDVLFVGPWDLGNNIG  199
                            AN     + QIE+   + N +EIA V G+D +F+G  DL  ++G
Sbjct  116  ----------------ANGNTCLLAQIESALGVLNADEIAAVEGVDGIFLGAEDLSADLG  159

Query  200  RPVTGAFHEDLEAAIERIRKAAVDNGKRAGIYCVGGAA-----AKKYADRGFHMISV  251
               +     ++  A ERI  AA    + AGI            A+ +   G   +++
Sbjct  160  TLRSPG-GPEVLYARERIVTAA----RAAGIAAFDTVYSDENDAEGFLAEGALFVAL  211



Lambda      K        H        a         alpha
   0.320    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0653    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00001955

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase...  159     3e-47


>CDD:396278 pfam01633, Choline_kinase, Choline/ethanolamine kinase.  Choline 
kinase catalyzes the committed step in the synthesis of 
phosphatidylcholine by the CDP-choline pathway. This alignment 
covers the protein kinase portion of the protein. The divergence 
of this family makes it very difficult to create a model 
that specifically predicts choline/ethanolamine kinases 
only. However if pfam01633 is also present then it is definitely 
a member of this family.
Length=211

 Score = 159 bits (404),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 115/259 (44%), Gaps = 63/259 (24%)

Query  78   DNEAVLMRAYGNHTEILIDRERETTSHALLASRGLAPSLLARFQNGLLYRFIRGRPATHL  137
                VL+R YG  TE+LI+RE E  + ALL+ RGL P L   F NG +  FI  R  +  
Sbjct  1    SPRKVLLRIYGPGTELLINREDEIVNFALLSERGLGPKLYGFFPNGRIEEFIPSRTLSTE  60

Query  138  DLVKPPLWRGVAQRLGQWHAVLPINGHSASSSSAKELPLSHHVDVDDQHQHEQEDDLDPI  197
            DL  P + + +A+RL + H++              E+P                      
Sbjct  61   DLRDPEISKLIAKRLAELHSL--------------EMPGK--------------------  86

Query  198  KPRVPGPNMWTVLQKWI-LALPTATEEQRTRRRALQ----KELERVVRELDDGRGLGDDG  252
                  P++W  ++KW+ L       E   +   L+    ++LE+ + +L+    L D  
Sbjct  87   ----KSPSLWKTMRKWLSLLKNLGAPESVNKSEQLKSINLEDLEKEINKLEKWLELLDSP  142

Query  253  LVFAHCDLLCANVIILPSQCPATAATSDKEALKVQFIDYEYATPSPAAFDIANHFAEWGG  312
            +VF H DL   N+++L                ++  ID+EYA+ +   FDIANHF EW G
Sbjct  143  IVFCHNDLQSGNILLLNET------------KRLVLIDFEYASYNYRGFDIANHFCEWAG  190

Query  313  --------YNCDYSMMPTR  323
                    + CDYS+ PTR
Sbjct  191  DYHDPTPFFKCDYSLYPTR  209



Lambda      K        H        a         alpha
   0.320    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00007420

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426164 pfam01261, AP_endonuc_2, Xylose isomerase-like TIM bar...  91.3    5e-22


>CDD:426164 pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel.  This 
TIM alpha/beta barrel structure is found in xylose isomerase 
and in endonuclease IV (EC:3.1.21.2). This domain is also 
found in the N termini of bacterial myo-inositol catabolism 
proteins. These are involved in the myo-inositol catabolism 
pathway, and is required for growth on myo-inositol in Rhizobium 
leguminosarum bv. viciae.
Length=248

 Score = 91.3 bits (227),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 62/288 (22%), Positives = 107/288 (37%), Gaps = 60/288 (21%)

Query  24   LHQASRHGYEGIELFFDDLDCLAHSSFNGCHLAAAHEVRRLCDSLGLSIICLQPFLFFE-  82
            L  A+  G++G+ELF         S         A E++      GL I+   P+L    
Sbjct  1    LAAAAELGFDGVELFTRRWFRPPLSD------EEAEELKAALKEHGLEIVVHAPYLGDNL  54

Query  83   GLLDRTQTEHLLTEKLPKWFQIAHILNTDLIQIPSNFLPSDPTTGAPRTTGDLDVIVSDL  142
               D  + E  + ++L +  ++A  L   L+         D    A      L  +   L
Sbjct  55   ASPDEEEREKAI-DRLKRAIELAAALGAKLVVFHPGSDLGDDPEEA------LARLAESL  107

Query  143  QRIADLGAAQSPPFRFVYEALA-WGTHV-STWEQAWAAVSRANRPNLGLCLDTFNLAGRV  200
            + +ADL  A+    R   E LA  GT+V +T+E+A   +   + PN+G+CLDT +L    
Sbjct  108  RELADL--AEREGVRLALEPLAGKGTNVGNTFEEALEIIDEVDSPNVGVCLDTGHLFAAG  165

Query  201  YADPAAPSGKTPHAEADLAASLQRLRERIDVQKVFYIQIVDGERLSAPLDENHPFHVPGQ  260
              D                        R+  + + ++ + D +       + H     G+
Sbjct  166  DGDLFE--------------------LRLGDRYIGHVHLKDSKNPLGSGPDRH--VPIGE  203

Query  261  PPRMSWSRNARLFPFEEDRGGYLPVLDVARAFFELGFEGWVSLELFSR  308
                                G +    + RA  E+G++G +SLE F+ 
Sbjct  204  --------------------GVIDFEALFRALKEIGYDGPLSLETFND  231



Lambda      K        H        a         alpha
   0.322    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 372672612


Query= TCONS_00001956

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         127     8e-35


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 127 bits (320),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 63/170 (37%), Positives = 90/170 (53%), Gaps = 19/170 (11%)

Query  8    VDQALEEQRTTI------GLGFWKPFKAAGTNKKVMYRLFLGSMLFFWQNGSGINAINYY  61
            VD+ L+E + ++          WK   +    K    RL +G ML  +Q  +GINAI YY
Sbjct  220  VDRELDEIKDSLEAGQEAEKASWKELFS---TKTRRQRLLIGVMLQIFQQLTGINAIFYY  276

Query  62   SPTVFKSIGLHGANTSMFSTGIFGVVKTVVTFVWLLYLIDRVGRRLLLLIGAAGAAVCLL  121
            S T+F+++GL   + S   T I GVV  V TF+  ++L+DR GRR LLL+GAAG A+C +
Sbjct  277  STTIFENLGL---SDSFLVTIIVGVVNFVFTFIA-IFLVDRFGRRPLLLLGAAGMAICFV  332

Query  122  IVGAYIKIADPASNPTQEMTGGGIAAMFFFYLYTVFYTPSWNGTPWVMNS  171
            I+G        A     +    GI A+ F  L+  F+   W   PWV+ S
Sbjct  333  ILGI------VALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVS  376



Lambda      K        H        a         alpha
   0.325    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00007421

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         127     8e-35


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 127 bits (320),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 63/170 (37%), Positives = 90/170 (53%), Gaps = 19/170 (11%)

Query  8    VDQALEEQRTTI------GLGFWKPFKAAGTNKKVMYRLFLGSMLFFWQNGSGINAINYY  61
            VD+ L+E + ++          WK   +    K    RL +G ML  +Q  +GINAI YY
Sbjct  220  VDRELDEIKDSLEAGQEAEKASWKELFS---TKTRRQRLLIGVMLQIFQQLTGINAIFYY  276

Query  62   SPTVFKSIGLHGANTSMFSTGIFGVVKTVVTFVWLLYLIDRVGRRLLLLIGAAGAAVCLL  121
            S T+F+++GL   + S   T I GVV  V TF+  ++L+DR GRR LLL+GAAG A+C +
Sbjct  277  STTIFENLGL---SDSFLVTIIVGVVNFVFTFIA-IFLVDRFGRRPLLLLGAAGMAICFV  332

Query  122  IVGAYIKIADPASNPTQEMTGGGIAAMFFFYLYTVFYTPSWNGTPWVMNS  171
            I+G        A     +    GI A+ F  L+  F+   W   PWV+ S
Sbjct  333  ILGI------VALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVS  376



Lambda      K        H        a         alpha
   0.325    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00001957

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...  93.4    4e-24


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score = 93.4 bits (233),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 29/97 (30%), Positives = 50/97 (52%), Gaps = 14/97 (14%)

Query  78   LYGHPLLNSLSPPLHQTIYQSLGLNWTQIPLSSVYGTSETYPPPYTRSPPIPKFLASIKS  137
            + G+P+ +SLSP +H   +++LGLN   +                     +P F+  +++
Sbjct  1    VIGNPISHSLSPAIHNAAFKALGLNGVYVAFE-------------VPPDNLPDFVEGLRA  47

Query  138  NPKFVGSSVTMPWKVTIMPHLDDLTEDARQAGACNTI  174
               F G +VT+P K   +P LD+L+ +A+  GA NTI
Sbjct  48   -LGFRGLNVTIPHKEAAIPLLDELSPEAKAIGAVNTI  83



Lambda      K        H        a         alpha
   0.315    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00001958

Length=851
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  104     3e-25
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  55.8    9e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 104 bits (260),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 65/272 (24%), Positives = 103/272 (38%), Gaps = 23/272 (8%)

Query  274  LDVYFSYTQCWFPILEKHDILRTAFRQSEDNAQILPRTTGSGDCAALWAVLTLASMQERS  333
            LD++F      FPIL +   LR  F      +              L A+L L ++   S
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASP-------LLLLAILALGALF--S  51

Query  334  IAATRQMGASPNRPRSSQLYATARALI----PAEKGIHEIGHVQALLILSLVKLGQQEWK  389
             + T +  +S     +  ++   RALI            +  +QALL+L L +LG  + K
Sbjct  52   ESPTARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRK  111

Query  390  DAWVLVGQAIRIARWLGLG----SPLTGSAENEKGSARSKHVFLGCFVLETLISSKTGQA  445
              W   G AIR+AR LGL               + +   + +F  CF L+ LIS   G  
Sbjct  112  LHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILG-R  170

Query  446  PSLRKEDLVKTGPINEDGLEEWHPWEDQTGLRAPESSRGSSHRGPLHALSTFNRMVSLM-  504
            P L  +  +      +D         D+  L  P  S  S    P   L   ++++S + 
Sbjct  171  PPLLSDSDIDLPLPCDDDDLWESDSADEVTL--PLISLESKSIKPPLFLIKLSKILSKIL  228

Query  505  --CILNDACCTKRLENNPAPQLEALERQLQHW  534
               +   +   +R        +  LER L +W
Sbjct  229  GSLLSIRSTLDQRDLQLKLSWVRELERALDNW  260


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 55.8 bits (135),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 19/39 (49%), Positives = 22/39 (56%), Gaps = 0/39 (0%)

Query  45  RACDSCRSKKDKCDGVQPVCSTCASLCRPCTYKTNPKKR  83
            ACD+CR +K KCDG +P CS C      CTY    KK 
Sbjct  1   TACDNCRKRKVKCDGKKPACSRCIKNGLECTYSRKSKKS  39



Lambda      K        H        a         alpha
   0.315    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1085248584


Query= TCONS_00001959

Length=922
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  178     2e-51
CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...   99     8e-26
CDD:426122 pfam01202, SKI, Shikimate kinase                           90.7    1e-21


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 178 bits (453),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 76/249 (31%), Positives = 124/249 (50%), Gaps = 27/249 (11%)

Query  327  AVTVPISSLFERELDIEDLESTADAFELKVD-IAEGASDGQGIDSALADRISQAVATIRR  385
             V +   +L E   ++E  +  AD  EL+VD + E   D        A+ +S+ +A +RR
Sbjct  1    CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEPVED--------AEDVSEQLALLRR  52

Query  386  NIVIPLIYHVESSLTPVGSPVQHNGPLRRSDDAYLSLIKHGLRLAPEYLTVDLSYSDDIL  445
               +PLI+   +            G    S++ YL L++  LRL  +Y+ V+L   ++IL
Sbjct  53   VGDLPLIFTFRT--------KSEGGEPDGSEEEYLELLRLALRLGVDYVDVELFLPEEIL  104

Query  446  SQVIASK--GTSKVIGHFAWSHPCPKGWEDAEPLAMYERARRLGCDMVRLTQPATTIEDN  503
             ++I +K  G +KVIG +   H         E ++ YE+ + LG D+V++   A +IED 
Sbjct  105  KELIEAKHEGGTKVIGSY---HDFEGTPSWEELISRYEKMQALGADIVKIAVMAKSIEDV  161

Query  504  FAVERFRHHVRGLPWQLPVIAFNTTPLGRMSSCFNPVL-TSVTPPPLLAEMQSKSLP-SL  561
             A+ RF   ++ L    P+IA +   LGR+S    P+  + VT   L   +  KS P  L
Sbjct  162  LALLRFTSEMKSLA-DKPLIAMSMGELGRISRVLGPIFGSPVTFAAL--GLAEKSAPGQL  218

Query  562  TLREAQEAL  570
            T +E +EAL
Sbjct  219  TAKELREAL  227


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score =  99 bits (250),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 37/83 (45%), Positives = 52/83 (63%), Gaps = 2/83 (2%)

Query  583  VFGANVTYSLSPAMHNAAFKACGIPHKYTIY--QSPSLRGLNELVENPYFGGTSVSLPYK  640
            V G  +++SLSPA+HNAAFKA G+   Y  +     +L    E +    F G +V++P+K
Sbjct  1    VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  641  TEVIPLLHSMSPHARAIGAVNTL  663
               IPLL  +SP A+AIGAVNT+
Sbjct  61   EAAIPLLDELSPEAKAIGAVNTI  83


>CDD:426122 pfam01202, SKI, Shikimate kinase.  
Length=159

 Score = 90.7 bits (226),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 40/145 (28%), Positives = 66/145 (46%), Gaps = 17/145 (12%)

Query  113  RGTGKSSLAVILAATSGKRMIDADQYFQQVTGRSRAAFKKEYDLTEYRQQEARVMESMLA  172
             G GKS++  +LA   G   ID D+  ++ TG S A   +E     +R+ E+ V++ +LA
Sbjct  1    MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLA  60

Query  173  EHKEGCVIACGPGSMERSG-QQLLREYAKTHPVIHIIRDPESIQSYLKAWDT--------  223
            EH  G VIA G G++     + LL+E      VI++    E +   LK   T        
Sbjct  61   EH--GLVIATGGGAVLSEENRDLLKE---RGIVIYLDAPLEVLLERLKRDKTRPLLQNKD  115

Query  224  --VKVRRFLELS-GPVYRACSNLEF  245
               ++   L     P+Y   +++  
Sbjct  116  PEEELLELLFEERDPLYEEAADIVI  140



Lambda      K        H        a         alpha
   0.318    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1187170078


Query= TCONS_00001961

Length=922
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  178     2e-51
CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...   99     8e-26
CDD:426122 pfam01202, SKI, Shikimate kinase                           90.7    1e-21


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 178 bits (453),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 76/249 (31%), Positives = 124/249 (50%), Gaps = 27/249 (11%)

Query  327  AVTVPISSLFERELDIEDLESTADAFELKVD-IAEGASDGQGIDSALADRISQAVATIRR  385
             V +   +L E   ++E  +  AD  EL+VD + E   D        A+ +S+ +A +RR
Sbjct  1    CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEPVED--------AEDVSEQLALLRR  52

Query  386  NIVIPLIYHVESSLTPVGSPVQHNGPLRRSDDAYLSLIKHGLRLAPEYLTVDLSYSDDIL  445
               +PLI+   +            G    S++ YL L++  LRL  +Y+ V+L   ++IL
Sbjct  53   VGDLPLIFTFRT--------KSEGGEPDGSEEEYLELLRLALRLGVDYVDVELFLPEEIL  104

Query  446  SQVIASK--GTSKVIGHFAWSHPCPKGWEDAEPLAMYERARRLGCDMVRLTQPATTIEDN  503
             ++I +K  G +KVIG +   H         E ++ YE+ + LG D+V++   A +IED 
Sbjct  105  KELIEAKHEGGTKVIGSY---HDFEGTPSWEELISRYEKMQALGADIVKIAVMAKSIEDV  161

Query  504  FAVERFRHHVRGLPWQLPVIAFNTTPLGRMSSCFNPVL-TSVTPPPLLAEMQSKSLP-SL  561
             A+ RF   ++ L    P+IA +   LGR+S    P+  + VT   L   +  KS P  L
Sbjct  162  LALLRFTSEMKSLA-DKPLIAMSMGELGRISRVLGPIFGSPVTFAAL--GLAEKSAPGQL  218

Query  562  TLREAQEAL  570
            T +E +EAL
Sbjct  219  TAKELREAL  227


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score =  99 bits (250),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 37/83 (45%), Positives = 52/83 (63%), Gaps = 2/83 (2%)

Query  583  VFGANVTYSLSPAMHNAAFKACGIPHKYTIY--QSPSLRGLNELVENPYFGGTSVSLPYK  640
            V G  +++SLSPA+HNAAFKA G+   Y  +     +L    E +    F G +V++P+K
Sbjct  1    VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  641  TEVIPLLHSMSPHARAIGAVNTL  663
               IPLL  +SP A+AIGAVNT+
Sbjct  61   EAAIPLLDELSPEAKAIGAVNTI  83


>CDD:426122 pfam01202, SKI, Shikimate kinase.  
Length=159

 Score = 90.7 bits (226),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 40/145 (28%), Positives = 66/145 (46%), Gaps = 17/145 (12%)

Query  113  RGTGKSSLAVILAATSGKRMIDADQYFQQVTGRSRAAFKKEYDLTEYRQQEARVMESMLA  172
             G GKS++  +LA   G   ID D+  ++ TG S A   +E     +R+ E+ V++ +LA
Sbjct  1    MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLA  60

Query  173  EHKEGCVIACGPGSMERSG-QQLLREYAKTHPVIHIIRDPESIQSYLKAWDT--------  223
            EH  G VIA G G++     + LL+E      VI++    E +   LK   T        
Sbjct  61   EH--GLVIATGGGAVLSEENRDLLKE---RGIVIYLDAPLEVLLERLKRDKTRPLLQNKD  115

Query  224  --VKVRRFLELS-GPVYRACSNLEF  245
               ++   L     P+Y   +++  
Sbjct  116  PEEELLELLFEERDPLYEEAADIVI  140



Lambda      K        H        a         alpha
   0.318    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1187170078


Query= TCONS_00001960

Length=922
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  178     2e-51
CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...   99     8e-26
CDD:426122 pfam01202, SKI, Shikimate kinase                           90.7    1e-21


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 178 bits (453),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 76/249 (31%), Positives = 124/249 (50%), Gaps = 27/249 (11%)

Query  327  AVTVPISSLFERELDIEDLESTADAFELKVD-IAEGASDGQGIDSALADRISQAVATIRR  385
             V +   +L E   ++E  +  AD  EL+VD + E   D        A+ +S+ +A +RR
Sbjct  1    CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEPVED--------AEDVSEQLALLRR  52

Query  386  NIVIPLIYHVESSLTPVGSPVQHNGPLRRSDDAYLSLIKHGLRLAPEYLTVDLSYSDDIL  445
               +PLI+   +            G    S++ YL L++  LRL  +Y+ V+L   ++IL
Sbjct  53   VGDLPLIFTFRT--------KSEGGEPDGSEEEYLELLRLALRLGVDYVDVELFLPEEIL  104

Query  446  SQVIASK--GTSKVIGHFAWSHPCPKGWEDAEPLAMYERARRLGCDMVRLTQPATTIEDN  503
             ++I +K  G +KVIG +   H         E ++ YE+ + LG D+V++   A +IED 
Sbjct  105  KELIEAKHEGGTKVIGSY---HDFEGTPSWEELISRYEKMQALGADIVKIAVMAKSIEDV  161

Query  504  FAVERFRHHVRGLPWQLPVIAFNTTPLGRMSSCFNPVL-TSVTPPPLLAEMQSKSLP-SL  561
             A+ RF   ++ L    P+IA +   LGR+S    P+  + VT   L   +  KS P  L
Sbjct  162  LALLRFTSEMKSLA-DKPLIAMSMGELGRISRVLGPIFGSPVTFAAL--GLAEKSAPGQL  218

Query  562  TLREAQEAL  570
            T +E +EAL
Sbjct  219  TAKELREAL  227


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score =  99 bits (250),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 37/83 (45%), Positives = 52/83 (63%), Gaps = 2/83 (2%)

Query  583  VFGANVTYSLSPAMHNAAFKACGIPHKYTIY--QSPSLRGLNELVENPYFGGTSVSLPYK  640
            V G  +++SLSPA+HNAAFKA G+   Y  +     +L    E +    F G +V++P+K
Sbjct  1    VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  641  TEVIPLLHSMSPHARAIGAVNTL  663
               IPLL  +SP A+AIGAVNT+
Sbjct  61   EAAIPLLDELSPEAKAIGAVNTI  83


>CDD:426122 pfam01202, SKI, Shikimate kinase.  
Length=159

 Score = 90.7 bits (226),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 40/145 (28%), Positives = 66/145 (46%), Gaps = 17/145 (12%)

Query  113  RGTGKSSLAVILAATSGKRMIDADQYFQQVTGRSRAAFKKEYDLTEYRQQEARVMESMLA  172
             G GKS++  +LA   G   ID D+  ++ TG S A   +E     +R+ E+ V++ +LA
Sbjct  1    MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLA  60

Query  173  EHKEGCVIACGPGSMERSG-QQLLREYAKTHPVIHIIRDPESIQSYLKAWDT--------  223
            EH  G VIA G G++     + LL+E      VI++    E +   LK   T        
Sbjct  61   EH--GLVIATGGGAVLSEENRDLLKE---RGIVIYLDAPLEVLLERLKRDKTRPLLQNKD  115

Query  224  --VKVRRFLELS-GPVYRACSNLEF  245
               ++   L     P+Y   +++  
Sbjct  116  PEEELLELLFEERDPLYEEAADIVI  140



Lambda      K        H        a         alpha
   0.318    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1187170078


Query= TCONS_00001962

Length=859
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  178     1e-51
CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...  99.6    8e-26
CDD:426122 pfam01202, SKI, Shikimate kinase                           90.7    9e-22


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 178 bits (454),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 76/249 (31%), Positives = 124/249 (50%), Gaps = 27/249 (11%)

Query  327  AVTVPISSLFERELDIEDLESTADAFELKVD-IAEGASDGQGIDSALADRISQAVATIRR  385
             V +   +L E   ++E  +  AD  EL+VD + E   D        A+ +S+ +A +RR
Sbjct  1    CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEPVED--------AEDVSEQLALLRR  52

Query  386  NIVIPLIYHVESSLTPVGSPVQHNGPLRRSDDAYLSLIKHGLRLAPEYLTVDLSYSDDIL  445
               +PLI+   +            G    S++ YL L++  LRL  +Y+ V+L   ++IL
Sbjct  53   VGDLPLIFTFRT--------KSEGGEPDGSEEEYLELLRLALRLGVDYVDVELFLPEEIL  104

Query  446  SQVIASK--GTSKVIGHFAWSHPCPKGWEDAEPLAMYERARRLGCDMVRLTQPATTIEDN  503
             ++I +K  G +KVIG +   H         E ++ YE+ + LG D+V++   A +IED 
Sbjct  105  KELIEAKHEGGTKVIGSY---HDFEGTPSWEELISRYEKMQALGADIVKIAVMAKSIEDV  161

Query  504  FAVERFRHHVRGLPWQLPVIAFNTTPLGRMSSCFNPVL-TSVTPPPLLAEMQSKSLP-SL  561
             A+ RF   ++ L    P+IA +   LGR+S    P+  + VT   L   +  KS P  L
Sbjct  162  LALLRFTSEMKSLA-DKPLIAMSMGELGRISRVLGPIFGSPVTFAAL--GLAEKSAPGQL  218

Query  562  TLREAQEAL  570
            T +E +EAL
Sbjct  219  TAKELREAL  227


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score = 99.6 bits (249),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 37/83 (45%), Positives = 52/83 (63%), Gaps = 2/83 (2%)

Query  583  VFGANVTYSLSPAMHNAAFKACGIPHKYTIY--QSPSLRGLNELVENPYFGGTSVSLPYK  640
            V G  +++SLSPA+HNAAFKA G+   Y  +     +L    E +    F G +V++P+K
Sbjct  1    VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  641  TEVIPLLHSMSPHARAIGAVNTL  663
               IPLL  +SP A+AIGAVNT+
Sbjct  61   EAAIPLLDELSPEAKAIGAVNTI  83


>CDD:426122 pfam01202, SKI, Shikimate kinase.  
Length=159

 Score = 90.7 bits (226),  Expect = 9e-22, Method: Composition-based stats.
 Identities = 40/145 (28%), Positives = 66/145 (46%), Gaps = 17/145 (12%)

Query  113  RGTGKSSLAVILAATSGKRMIDADQYFQQVTGRSRAAFKKEYDLTEYRQQEARVMESMLA  172
             G GKS++  +LA   G   ID D+  ++ TG S A   +E     +R+ E+ V++ +LA
Sbjct  1    MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLA  60

Query  173  EHKEGCVIACGPGSMERSG-QQLLREYAKTHPVIHIIRDPESIQSYLKAWDT--------  223
            EH  G VIA G G++     + LL+E      VI++    E +   LK   T        
Sbjct  61   EH--GLVIATGGGAVLSEENRDLLKE---RGIVIYLDAPLEVLLERLKRDKTRPLLQNKD  115

Query  224  --VKVRRFLELS-GPVYRACSNLEF  245
               ++   L     P+Y   +++  
Sbjct  116  PEEELLELLFEERDPLYEEAADIVI  140



Lambda      K        H        a         alpha
   0.318    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1096732696


Query= TCONS_00001963

Length=922
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  178     2e-51
CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...   99     8e-26
CDD:426122 pfam01202, SKI, Shikimate kinase                           90.7    1e-21


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 178 bits (453),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 76/249 (31%), Positives = 124/249 (50%), Gaps = 27/249 (11%)

Query  327  AVTVPISSLFERELDIEDLESTADAFELKVD-IAEGASDGQGIDSALADRISQAVATIRR  385
             V +   +L E   ++E  +  AD  EL+VD + E   D        A+ +S+ +A +RR
Sbjct  1    CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEPVED--------AEDVSEQLALLRR  52

Query  386  NIVIPLIYHVESSLTPVGSPVQHNGPLRRSDDAYLSLIKHGLRLAPEYLTVDLSYSDDIL  445
               +PLI+   +            G    S++ YL L++  LRL  +Y+ V+L   ++IL
Sbjct  53   VGDLPLIFTFRT--------KSEGGEPDGSEEEYLELLRLALRLGVDYVDVELFLPEEIL  104

Query  446  SQVIASK--GTSKVIGHFAWSHPCPKGWEDAEPLAMYERARRLGCDMVRLTQPATTIEDN  503
             ++I +K  G +KVIG +   H         E ++ YE+ + LG D+V++   A +IED 
Sbjct  105  KELIEAKHEGGTKVIGSY---HDFEGTPSWEELISRYEKMQALGADIVKIAVMAKSIEDV  161

Query  504  FAVERFRHHVRGLPWQLPVIAFNTTPLGRMSSCFNPVL-TSVTPPPLLAEMQSKSLP-SL  561
             A+ RF   ++ L    P+IA +   LGR+S    P+  + VT   L   +  KS P  L
Sbjct  162  LALLRFTSEMKSLA-DKPLIAMSMGELGRISRVLGPIFGSPVTFAAL--GLAEKSAPGQL  218

Query  562  TLREAQEAL  570
            T +E +EAL
Sbjct  219  TAKELREAL  227


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score =  99 bits (250),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 37/83 (45%), Positives = 52/83 (63%), Gaps = 2/83 (2%)

Query  583  VFGANVTYSLSPAMHNAAFKACGIPHKYTIY--QSPSLRGLNELVENPYFGGTSVSLPYK  640
            V G  +++SLSPA+HNAAFKA G+   Y  +     +L    E +    F G +V++P+K
Sbjct  1    VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  641  TEVIPLLHSMSPHARAIGAVNTL  663
               IPLL  +SP A+AIGAVNT+
Sbjct  61   EAAIPLLDELSPEAKAIGAVNTI  83


>CDD:426122 pfam01202, SKI, Shikimate kinase.  
Length=159

 Score = 90.7 bits (226),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 40/145 (28%), Positives = 66/145 (46%), Gaps = 17/145 (12%)

Query  113  RGTGKSSLAVILAATSGKRMIDADQYFQQVTGRSRAAFKKEYDLTEYRQQEARVMESMLA  172
             G GKS++  +LA   G   ID D+  ++ TG S A   +E     +R+ E+ V++ +LA
Sbjct  1    MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLA  60

Query  173  EHKEGCVIACGPGSMERSG-QQLLREYAKTHPVIHIIRDPESIQSYLKAWDT--------  223
            EH  G VIA G G++     + LL+E      VI++    E +   LK   T        
Sbjct  61   EH--GLVIATGGGAVLSEENRDLLKE---RGIVIYLDAPLEVLLERLKRDKTRPLLQNKD  115

Query  224  --VKVRRFLELS-GPVYRACSNLEF  245
               ++   L     P+Y   +++  
Sbjct  116  PEEELLELLFEERDPLYEEAADIVI  140



Lambda      K        H        a         alpha
   0.318    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1187170078


Query= TCONS_00007422

Length=922
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  178     2e-51
CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...   99     8e-26
CDD:426122 pfam01202, SKI, Shikimate kinase                           90.7    1e-21


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 178 bits (453),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 76/249 (31%), Positives = 124/249 (50%), Gaps = 27/249 (11%)

Query  327  AVTVPISSLFERELDIEDLESTADAFELKVD-IAEGASDGQGIDSALADRISQAVATIRR  385
             V +   +L E   ++E  +  AD  EL+VD + E   D        A+ +S+ +A +RR
Sbjct  1    CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEPVED--------AEDVSEQLALLRR  52

Query  386  NIVIPLIYHVESSLTPVGSPVQHNGPLRRSDDAYLSLIKHGLRLAPEYLTVDLSYSDDIL  445
               +PLI+   +            G    S++ YL L++  LRL  +Y+ V+L   ++IL
Sbjct  53   VGDLPLIFTFRT--------KSEGGEPDGSEEEYLELLRLALRLGVDYVDVELFLPEEIL  104

Query  446  SQVIASK--GTSKVIGHFAWSHPCPKGWEDAEPLAMYERARRLGCDMVRLTQPATTIEDN  503
             ++I +K  G +KVIG +   H         E ++ YE+ + LG D+V++   A +IED 
Sbjct  105  KELIEAKHEGGTKVIGSY---HDFEGTPSWEELISRYEKMQALGADIVKIAVMAKSIEDV  161

Query  504  FAVERFRHHVRGLPWQLPVIAFNTTPLGRMSSCFNPVL-TSVTPPPLLAEMQSKSLP-SL  561
             A+ RF   ++ L    P+IA +   LGR+S    P+  + VT   L   +  KS P  L
Sbjct  162  LALLRFTSEMKSLA-DKPLIAMSMGELGRISRVLGPIFGSPVTFAAL--GLAEKSAPGQL  218

Query  562  TLREAQEAL  570
            T +E +EAL
Sbjct  219  TAKELREAL  227


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score =  99 bits (250),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 37/83 (45%), Positives = 52/83 (63%), Gaps = 2/83 (2%)

Query  583  VFGANVTYSLSPAMHNAAFKACGIPHKYTIY--QSPSLRGLNELVENPYFGGTSVSLPYK  640
            V G  +++SLSPA+HNAAFKA G+   Y  +     +L    E +    F G +V++P+K
Sbjct  1    VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  641  TEVIPLLHSMSPHARAIGAVNTL  663
               IPLL  +SP A+AIGAVNT+
Sbjct  61   EAAIPLLDELSPEAKAIGAVNTI  83


>CDD:426122 pfam01202, SKI, Shikimate kinase.  
Length=159

 Score = 90.7 bits (226),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 40/145 (28%), Positives = 66/145 (46%), Gaps = 17/145 (12%)

Query  113  RGTGKSSLAVILAATSGKRMIDADQYFQQVTGRSRAAFKKEYDLTEYRQQEARVMESMLA  172
             G GKS++  +LA   G   ID D+  ++ TG S A   +E     +R+ E+ V++ +LA
Sbjct  1    MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLA  60

Query  173  EHKEGCVIACGPGSMERSG-QQLLREYAKTHPVIHIIRDPESIQSYLKAWDT--------  223
            EH  G VIA G G++     + LL+E      VI++    E +   LK   T        
Sbjct  61   EH--GLVIATGGGAVLSEENRDLLKE---RGIVIYLDAPLEVLLERLKRDKTRPLLQNKD  115

Query  224  --VKVRRFLELS-GPVYRACSNLEF  245
               ++   L     P+Y   +++  
Sbjct  116  PEEELLELLFEERDPLYEEAADIVI  140



Lambda      K        H        a         alpha
   0.318    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1187170078


Query= TCONS_00007423

Length=182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like...  61.7    4e-12


>CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This 
family includes FMO proteins, cyclohexanone mono-oxygenase 
and a number of different mono-oxygenases.
Length=531

 Score = 61.7 bits (150),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 44/154 (29%), Positives = 69/154 (45%), Gaps = 11/154 (7%)

Query  5    PFPRNWPQFTPKDKLADWFEAYASIMEL--NVWLKT---NVKSAEYDDSTAQWTVTVVRV  59
            PFP ++P F    K  ++F  +A   +L   +  KT   +VK      ++ QW V     
Sbjct  72   PFPEDYPNFMHNSKFLEYFRMFAKEFDLLKYIQFKTTVCSVKKRPDFSTSGQWEVVTEH-  130

Query  60   DTGSERVLHPRHIVWCTGHSGEPKIP--TFPNQAHFKGTIYHGSQHHDASDYDVKGKKVV  117
              G +       ++ CTGH   P +P  +FP    FKG  +H   +     +  K   V+
Sbjct  131  -EGKQESAVFDAVMVCTGHHTNPHLPLESFPGIEKFKGQYFHSRDYKHPEGFTGKRVLVI  189

Query  118  VVGTGNSGHDIAQNFYENGADVTMLQRRGTYVIT  151
             +G  NSG DIA       A V +  RRG++V++
Sbjct  190  GIG--NSGGDIAVELSHTAAQVFLSTRRGSWVLS  221



Lambda      K        H        a         alpha
   0.318    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00001964

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like...  70.6    2e-13


>CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This 
family includes FMO proteins, cyclohexanone mono-oxygenase 
and a number of different mono-oxygenases.
Length=531

 Score = 70.6 bits (173),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 21/220 (10%)

Query  204  LVGAGQAGLNMAARLQALGISCLVVDRNERIGDNWR----------KRYRTLVTHDPVEF  253
            ++GAG +GL         G+     +R++ IG  WR            Y++++T+   E 
Sbjct  6    VIGAGVSGLASIKCCLEEGLEPTCFERSDDIGGLWRFTENVEEGRASIYKSVITNTSKEM  65

Query  254  THMAYLPFPRNWPQFTPKDKLADWFEAYASIMEL--NVWLKT---NVKSAEYDDSTAQWT  308
            +  +  PFP ++P F    K  ++F  +A   +L   +  KT   +VK      ++ QW 
Sbjct  66   SCFSDFPFPEDYPNFMHNSKFLEYFRMFAKEFDLLKYIQFKTTVCSVKKRPDFSTSGQWE  125

Query  309  VTVVRVDTGSERVLHPRHIVWCTGHSGEPKIP--TFPNQAHFKGTIYHGSQHHDASDYDV  366
            V       G +       ++ CTGH   P +P  +FP    FKG  +H   +     +  
Sbjct  126  VVTEH--EGKQESAVFDAVMVCTGHHTNPHLPLESFPGIEKFKGQYFHSRDYKHPEGFTG  183

Query  367  KGKKVVVVGTGNSGHDIAQNFYENGADVTMLQRRGTYVIT  406
            K   V+ +G  NSG DIA       A V +  RRG++V++
Sbjct  184  KRVLVIGIG--NSGGDIAVELSHTAAQVFLSTRRGSWVLS  221



Lambda      K        H        a         alpha
   0.319    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 738247432


Query= TCONS_00007424

Length=182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like...  61.7    4e-12


>CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This 
family includes FMO proteins, cyclohexanone mono-oxygenase 
and a number of different mono-oxygenases.
Length=531

 Score = 61.7 bits (150),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 44/154 (29%), Positives = 69/154 (45%), Gaps = 11/154 (7%)

Query  5    PFPRNWPQFTPKDKLADWFEAYASIMEL--NVWLKT---NVKSAEYDDSTAQWTVTVVRV  59
            PFP ++P F    K  ++F  +A   +L   +  KT   +VK      ++ QW V     
Sbjct  72   PFPEDYPNFMHNSKFLEYFRMFAKEFDLLKYIQFKTTVCSVKKRPDFSTSGQWEVVTEH-  130

Query  60   DTGSERVLHPRHIVWCTGHSGEPKIP--TFPNQAHFKGTIYHGSQHHDASDYDVKGKKVV  117
              G +       ++ CTGH   P +P  +FP    FKG  +H   +     +  K   V+
Sbjct  131  -EGKQESAVFDAVMVCTGHHTNPHLPLESFPGIEKFKGQYFHSRDYKHPEGFTGKRVLVI  189

Query  118  VVGTGNSGHDIAQNFYENGADVTMLQRRGTYVIT  151
             +G  NSG DIA       A V +  RRG++V++
Sbjct  190  GIG--NSGGDIAVELSHTAAQVFLSTRRGSWVLS  221



Lambda      K        H        a         alpha
   0.318    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00001965

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like...  62.1    3e-11


>CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This 
family includes FMO proteins, cyclohexanone mono-oxygenase 
and a number of different mono-oxygenases.
Length=531

 Score = 62.1 bits (151),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 44/154 (29%), Positives = 69/154 (45%), Gaps = 11/154 (7%)

Query  5    PFPRNWPQFTPKDKLADWFEAYASIMEL--NVWLKT---NVKSAEYDDSTAQWTVTVVRV  59
            PFP ++P F    K  ++F  +A   +L   +  KT   +VK      ++ QW V     
Sbjct  72   PFPEDYPNFMHNSKFLEYFRMFAKEFDLLKYIQFKTTVCSVKKRPDFSTSGQWEVVTEH-  130

Query  60   DTGSERVLHPRHIVWCTGHSGEPKIP--TFPNQAHFKGTIYHGSQHHDASDYDVKGKKVV  117
              G +       ++ CTGH   P +P  +FP    FKG  +H   +     +  K   V+
Sbjct  131  -EGKQESAVFDAVMVCTGHHTNPHLPLESFPGIEKFKGQYFHSRDYKHPEGFTGKRVLVI  189

Query  118  VVGTGNSGHDIAQNFYENGADVTMLQRRGTYVIT  151
             +G  NSG DIA       A V +  RRG++V++
Sbjct  190  GIG--NSGGDIAVELSHTAAQVFLSTRRGSWVLS  221



Lambda      K        H        a         alpha
   0.318    0.137    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00007426

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like...  70.6    1e-13


>CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This 
family includes FMO proteins, cyclohexanone mono-oxygenase 
and a number of different mono-oxygenases.
Length=531

 Score = 70.6 bits (173),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 21/220 (10%)

Query  204  LVGAGQAGLNMAARLQALGISCLVVDRNERIGDNWR----------KRYRTLVTHDPVEF  253
            ++GAG +GL         G+     +R++ IG  WR            Y++++T+   E 
Sbjct  6    VIGAGVSGLASIKCCLEEGLEPTCFERSDDIGGLWRFTENVEEGRASIYKSVITNTSKEM  65

Query  254  THMAYLPFPRNWPQFTPKDKLADWFEAYASIMEL--NVWLKT---NVKSAEYDDSTAQWT  308
            +  +  PFP ++P F    K  ++F  +A   +L   +  KT   +VK      ++ QW 
Sbjct  66   SCFSDFPFPEDYPNFMHNSKFLEYFRMFAKEFDLLKYIQFKTTVCSVKKRPDFSTSGQWE  125

Query  309  VTVVRVDTGSERVLHPRHIVWCTGHSGEPKIP--TFPNQAHFKGTIYHGSQHHDASDYDV  366
            V       G +       ++ CTGH   P +P  +FP    FKG  +H   +     +  
Sbjct  126  VVTEH--EGKQESAVFDAVMVCTGHHTNPHLPLESFPGIEKFKGQYFHSRDYKHPEGFTG  183

Query  367  KGKKVVVVGTGNSGHDIAQNFYENGADVTMLQRRGTYVIT  406
            K   V+ +G  NSG DIA       A V +  RRG++V++
Sbjct  184  KRVLVIGIG--NSGGDIAVELSHTAAQVFLSTRRGSWVLS  221



Lambda      K        H        a         alpha
   0.319    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00001966

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00001967

Length=74
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459905 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e fa...  79.9    3e-21


>CDD:459905 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family.  
This family includes prokaryotic L1 and eukaryotic L10.
Length=197

 Score = 79.9 bits (198),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 30/70 (43%), Positives = 41/70 (59%), Gaps = 1/70 (1%)

Query  1    MANKVTEIKS-TIKFQLKKVLCLGVAVGNVGMTKEELVANVMLAINYLVSLLKKGWQNVG  59
            +A  V E KS T++F++ K  C+ V VG V  T E+L  N+   I+ LV    KG QN+ 
Sbjct  128  VAKAVEEAKSGTVEFRVDKGGCIHVKVGKVSFTPEQLAENIEAVIDALVKKKPKGGQNIK  187

Query  60   SLVLKATMSP  69
            S+ LK TM P
Sbjct  188  SIYLKTTMGP  197



Lambda      K        H        a         alpha
   0.319    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0783    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00007428

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.142    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00007427

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.142    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00007429

Length=290


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00007430

Length=290


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00001968

Length=246


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00001969

Length=246


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00007432

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.127    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00001973

Length=351


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00001972

Length=482


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 591999806


Query= TCONS_00001971

Length=459


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00001974

Length=469


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581273816


Query= TCONS_00007434

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00001975

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00001976

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00007436

Length=365


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00001977

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00001978

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00007437

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00001979

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00001980

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00001981

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00007438

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  279     2e-98
CDD:462797 pfam09439, SRPRB, Signal recognition particle receptor...  62.5    4e-13
CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  59.8    3e-12
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  57.9    5e-12
CDD:459835 pfam00503, G-alpha, G-protein alpha subunit. G protein...  58.4    4e-11


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 279 bits (716),  Expect = 2e-98, Method: Composition-based stats.
 Identities = 110/160 (69%), Positives = 128/160 (80%), Gaps = 0/160 (0%)

Query  18   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPL  77
            MRIL++GLD AGKTTILYKLKLGEIVTTIPTIGFNVETV YKN++FTVWDVGGQ+ +RPL
Sbjct  1    MRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKFTVWDVGGQESLRPL  60

Query  78   WRHYFQNTQGIIFVVDSNDRDRIVEAREELQRMLNEDELRDALLLVFANKQDLPNAMSPA  137
            WR+YF NT  +IFVVDS DRDRI EA+EEL  +LNE+EL DA LL+ ANKQDLP AMS A
Sbjct  61   WRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEA  120

Query  138  EITQQLGLQSLTRRAWVSWLDCQCTGDGLYEGLEWLADAL  177
            EI + LGL  L  R W        TG+GL EGL+WL++ +
Sbjct  121  EIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI  160


>CDD:462797 pfam09439, SRPRB, Signal recognition particle receptor beta subunit. 
 The beta subunit of the signal recognition particle 
receptor (SRP) is a transmembrane GTPase which anchors the 
alpha subunit to the endoplasmic reticulum membrane.
Length=181

 Score = 62.5 bits (152),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 62/133 (47%), Gaps = 8/133 (6%)

Query  19   RILMVGLDAAGKTTILYKLKLGEIVTTIPTI--GFNVETVEYKNIQFTVWDVGGQDKIRP  76
             +++ GL  +GKT++   L    +  T+ +         +  K   FT+ D  G  K+R 
Sbjct  5    AVIIAGLCDSGKTSLFTLLTTDSVRPTVTSQEPSAAYRYMLNKGNSFTLIDFPGHVKLRY  64

Query  77   --LWRHYFQ-NTQGIIFVVDSN-DRDRIVEAREELQRMLNEDEL-RDAL-LLVFANKQDL  130
              L       + +GI+FVVDS      + +  E L  +L+  EL ++ + +L+  NKQ+ 
Sbjct  65   KLLETLKDSSSLKGIVFVVDSTIFPKEVTDTAEFLYDILSITELLKNGIDILIACNKQES  124

Query  131  PNAMSPAEITQQL  143
              A  P +I Q L
Sbjct  125  FTARPPKKIKQAL  137


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 59.8 bits (146),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 82/172 (48%), Gaps = 21/172 (12%)

Query  19   RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNIQFTVWDVGGQDK  73
            ++++VG    GK+++L +    +     IPTIG  F  +T+E   K ++  +WD  GQ++
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  74   IRPLWRHYFQNTQGIIFVVDSNDRDRIVEAR---EELQRMLNEDELRDALLLVFANKQDL  130
             R L   Y++   G + V D   RD     +   EE+ R  +E+     ++LV  NK DL
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVKKWVEEILRHADENV---PIVLV-GNKCDL  116

Query  131  PN--AMSPAEITQQLGLQSLTRRAWVSWLDCQ-CTGDGLYEGLEWLADALRK  179
             +   +S  E       ++L +   + +++    T + + E  E LA  + K
Sbjct  117  EDQRVVSTEEG------EALAKELGLPFMETSAKTNENVEEAFEELAREILK  162


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 57.9 bits (141),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 26/119 (22%), Positives = 49/119 (41%), Gaps = 13/119 (11%)

Query  19   RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY-------KNIQFTVWDVGG  70
            +++++G    GKT++L +            TIG + +T          K I+  +WD  G
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  71   QDKIRPLWRHYFQNTQGIIFVVDSNDRDRIVEAREELQRMLNEDELRDALLLVFANKQD  129
            Q++ R L   Y++     + V DS     +     EL++           +++  NK D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDSRTFSNLKYWLRELKKYAGNSP-----VILVGNKID  114


>CDD:459835 pfam00503, G-alpha, G-protein alpha subunit.  G proteins couple 
receptors of extracellular signals to intracellular signaling 
pathways. The G protein alpha subunit binds guanyl nucleotide 
and is a weak GTPase. A set of residues that are unique 
to G-alpha as compared to its ancestor the Arf-like family 
form a ring of residues centered on the nucleotide binding 
site. A Ggamma is found fused to an inactive Galpha in the 
Dictyostelium protein gbqA.
Length=316

 Score = 58.4 bits (142),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 49/95 (52%), Gaps = 10/95 (11%)

Query  46   IPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVV----------DSN  95
            + T G      E+K ++F ++DVGGQ   R  W H F++   IIFVV          + +
Sbjct  152  VKTTGIIETKFEFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDD  211

Query  96   DRDRIVEAREELQRMLNEDELRDALLLVFANKQDL  130
              +R+ E+ +  + + N    ++  +++F NK+DL
Sbjct  212  STNRMEESLKLFEEICNSPWFKNTPIILFLNKKDL  246



Lambda      K        H        a         alpha
   0.321    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00001982

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  298     6e-106
CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  62.9    2e-13 
CDD:462797 pfam09439, SRPRB, Signal recognition particle receptor...  61.7    8e-13 
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  57.9    5e-12 
CDD:459835 pfam00503, G-alpha, G-protein alpha subunit. G protein...  58.0    5e-11 


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 298 bits (766),  Expect = 6e-106, Method: Composition-based stats.
 Identities = 113/160 (71%), Positives = 131/160 (82%), Gaps = 0/160 (0%)

Query  18   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPL  77
            MRIL++GLD AGKTTILYKLKLGEIVTTIPTIGFNVETV YKN++FTVWDVGGQ+ +RPL
Sbjct  1    MRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKFTVWDVGGQESLRPL  60

Query  78   WRHYFQNTQGIIFVVDSNDRDRIVEAREELQRMLNEDELRDALLLVFANKQDLPNAMSPA  137
            WR+YF NT  +IFVVDS DRDRI EA+EEL  +LNE+EL DA LL+ ANKQDLP AMS A
Sbjct  61   WRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEA  120

Query  138  EITQQLGLQSLTRRAWYIQSTCATTGDGLYEGLEWLADAL  177
            EI + LGL  L  R W IQ   A TG+GL EGL+WL++ +
Sbjct  121  EIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI  160


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 62.9 bits (154),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 85/174 (49%), Gaps = 25/174 (14%)

Query  19   RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNIQFTVWDVGGQDK  73
            ++++VG    GK+++L +    +     IPTIG  F  +T+E   K ++  +WD  GQ++
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  74   IRPLWRHYFQNTQGIIFVVDSNDRDRIVEAR---EELQRMLNEDELRDALLLVFANKQDL  130
             R L   Y++   G + V D   RD     +   EE+ R  +E+     ++LV  NK DL
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVKKWVEEILRHADENV---PIVLV-GNKCDL  116

Query  131  PN--AMSPAE---ITQQLGLQSLTRRAWYIQSTCATTGDGLYEGLEWLADALRK  179
             +   +S  E   + ++LGL        +++ T A T + + E  E LA  + K
Sbjct  117  EDQRVVSTEEGEALAKELGLP-------FME-TSAKTNENVEEAFEELAREILK  162


>CDD:462797 pfam09439, SRPRB, Signal recognition particle receptor beta subunit. 
 The beta subunit of the signal recognition particle 
receptor (SRP) is a transmembrane GTPase which anchors the 
alpha subunit to the endoplasmic reticulum membrane.
Length=181

 Score = 61.7 bits (150),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 62/133 (47%), Gaps = 8/133 (6%)

Query  19   RILMVGLDAAGKTTILYKLKLGEIVTTIPTI--GFNVETVEYKNIQFTVWDVGGQDKIRP  76
             +++ GL  +GKT++   L    +  T+ +         +  K   FT+ D  G  K+R 
Sbjct  5    AVIIAGLCDSGKTSLFTLLTTDSVRPTVTSQEPSAAYRYMLNKGNSFTLIDFPGHVKLRY  64

Query  77   --LWRHYFQ-NTQGIIFVVDSN-DRDRIVEAREELQRMLNEDEL-RDAL-LLVFANKQDL  130
              L       + +GI+FVVDS      + +  E L  +L+  EL ++ + +L+  NKQ+ 
Sbjct  65   KLLETLKDSSSLKGIVFVVDSTIFPKEVTDTAEFLYDILSITELLKNGIDILIACNKQES  124

Query  131  PNAMSPAEITQQL  143
              A  P +I Q L
Sbjct  125  FTARPPKKIKQAL  137


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 57.9 bits (141),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 26/119 (22%), Positives = 49/119 (41%), Gaps = 13/119 (11%)

Query  19   RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY-------KNIQFTVWDVGG  70
            +++++G    GKT++L +            TIG + +T          K I+  +WD  G
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  71   QDKIRPLWRHYFQNTQGIIFVVDSNDRDRIVEAREELQRMLNEDELRDALLLVFANKQD  129
            Q++ R L   Y++     + V DS     +     EL++           +++  NK D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDSRTFSNLKYWLRELKKYAGNSP-----VILVGNKID  114


>CDD:459835 pfam00503, G-alpha, G-protein alpha subunit.  G proteins couple 
receptors of extracellular signals to intracellular signaling 
pathways. The G protein alpha subunit binds guanyl nucleotide 
and is a weak GTPase. A set of residues that are unique 
to G-alpha as compared to its ancestor the Arf-like family 
form a ring of residues centered on the nucleotide binding 
site. A Ggamma is found fused to an inactive Galpha in the 
Dictyostelium protein gbqA.
Length=316

 Score = 58.0 bits (141),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 49/95 (52%), Gaps = 10/95 (11%)

Query  46   IPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVV----------DSN  95
            + T G      E+K ++F ++DVGGQ   R  W H F++   IIFVV          + +
Sbjct  152  VKTTGIIETKFEFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDD  211

Query  96   DRDRIVEAREELQRMLNEDELRDALLLVFANKQDL  130
              +R+ E+ +  + + N    ++  +++F NK+DL
Sbjct  212  STNRMEESLKLFEEICNSPWFKNTPIILFLNKKDL  246



Lambda      K        H        a         alpha
   0.321    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00007439

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00007440

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00007441

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00001983

Length=406


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00007442

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00001984

Length=406


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00001985

Length=406


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00007443

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00007444

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00007445

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00007446

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00001987

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00001986

Length=406


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00007447

Length=406


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00001988

Length=401


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.118    0.322    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00007448

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460086 pfam01156, IU_nuc_hydro, Inosine-uridine preferring nu...  73.8    7e-16


>CDD:460086 pfam01156, IU_nuc_hydro, Inosine-uridine preferring nucleoside 
hydrolase.  
Length=253

 Score = 73.8 bits (182),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 27/47 (57%), Positives = 32/47 (68%), Gaps = 0/47 (0%)

Query  263  NDPDTVTLVAVGPLTNLALASAEDAETFLRVKEVVVMGGAVNEPGNV  309
             +P  VTLVA GPLTNLALA   D E   ++KE+V+MGGA    GNV
Sbjct  66   REPGEVTLVATGPLTNLALALRLDPELAKKIKELVIMGGAFGVRGNV  112



Lambda      K        H        a         alpha
   0.321    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00001989

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460086 pfam01156, IU_nuc_hydro, Inosine-uridine preferring nu...  126     1e-35


>CDD:460086 pfam01156, IU_nuc_hydro, Inosine-uridine preferring nucleoside 
hydrolase.  
Length=253

 Score = 126 bits (319),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 69/214 (32%), Positives = 91/214 (43%), Gaps = 54/214 (25%)

Query  42   NDPDTVTLVAVGPLTNLALASAEDAETFLRVKEVVVMGGAVNEPGNVTPVAEFNAYADAF  101
             +P  VTLVA GPLTNLALA   D E   ++KE+V+MGGA    GNVTP AEFN      
Sbjct  66   REPGEVTLVATGPLTNLALALRLDPELAKKIKELVIMGGAFGVRGNVTPAAEFN------  119

Query  102  AAARVFA--------LTSPNPKTTMPSGTTLPSYPAKLSKQLTLRLFPLDITHRHGMTRG  153
                +F          TS  P T                      + PLD+TH+  +T  
Sbjct  120  ----IFVDPEAAKIVFTSGLPIT----------------------MVPLDVTHQALLTPE  153

Query  154  LFRQAVAPHLEAGSPLAEWMSAFMAHTFRTIESLHRDQVGDAVDLSLHDPVCVWYALTAE  213
               +  A     G  LA+ +  +           +R++ G      LHDP+ V  AL  E
Sbjct  154  DLERLAALGTPLGRFLADLLRFYAEF--------YRERFGID-GPPLHDPLAVAVALDPE  204

Query  214  DAGWKPSDASPEDIRVETTGQWTRGACIVDRRPR  247
                +       ++ VETTG  TRG  +VD R  
Sbjct  205  LFTTRRL-----NVDVETTGGLTRGQTVVDDRGG  233



Lambda      K        H        a         alpha
   0.318    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00001991

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460086 pfam01156, IU_nuc_hydro, Inosine-uridine preferring nu...  130     3e-35


>CDD:460086 pfam01156, IU_nuc_hydro, Inosine-uridine preferring nucleoside 
hydrolase.  
Length=253

 Score = 130 bits (330),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 69/214 (32%), Positives = 91/214 (43%), Gaps = 54/214 (25%)

Query  270  NDPDTVTLVAVGPLTNLALASAEDAETFLRVKEVVVMGGAVNEPGNVTPVAEFNAYADAF  329
             +P  VTLVA GPLTNLALA   D E   ++KE+V+MGGA    GNVTP AEFN      
Sbjct  66   REPGEVTLVATGPLTNLALALRLDPELAKKIKELVIMGGAFGVRGNVTPAAEFN------  119

Query  330  AAARVFA--------LTSPNPKTTMPSGTTLPSYPAKLSKQLTLRLFPLDITHRHGMTRG  381
                +F          TS  P T                      + PLD+TH+  +T  
Sbjct  120  ----IFVDPEAAKIVFTSGLPIT----------------------MVPLDVTHQALLTPE  153

Query  382  LFRQAVAPHLEAGSPLAEWMSAFMAHTFRTIESLHRDQVGDAVDLSLHDPVCVWYALTAE  441
               +  A     G  LA+ +  +           +R++ G      LHDP+ V  AL  E
Sbjct  154  DLERLAALGTPLGRFLADLLRFYAEF--------YRERFGID-GPPLHDPLAVAVALDPE  204

Query  442  DAGWKPSDASPEDIRVETTGQWTRGACIVDRRPR  475
                +       ++ VETTG  TRG  +VD R  
Sbjct  205  LFTTRRL-----NVDVETTGGLTRGQTVVDDRGG  233



Lambda      K        H        a         alpha
   0.320    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 652562446


Query= TCONS_00001992

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460086 pfam01156, IU_nuc_hydro, Inosine-uridine preferring nu...  127     9e-35


>CDD:460086 pfam01156, IU_nuc_hydro, Inosine-uridine preferring nucleoside 
hydrolase.  
Length=253

 Score = 127 bits (322),  Expect = 9e-35, Method: Composition-based stats.
 Identities = 69/214 (32%), Positives = 91/214 (43%), Gaps = 54/214 (25%)

Query  169  NDPDTVTLVAVGPLTNLALASAEDAETFLRVKEVVVMGGAVNEPGNVTPVAEFNAYADAF  228
             +P  VTLVA GPLTNLALA   D E   ++KE+V+MGGA    GNVTP AEFN      
Sbjct  66   REPGEVTLVATGPLTNLALALRLDPELAKKIKELVIMGGAFGVRGNVTPAAEFN------  119

Query  229  AAARVFA--------LTSPNPKTTMPSGTTLPSYPAKLSKQLTLRLFPLDITHRHGMTRG  280
                +F          TS  P T                      + PLD+TH+  +T  
Sbjct  120  ----IFVDPEAAKIVFTSGLPIT----------------------MVPLDVTHQALLTPE  153

Query  281  LFRQAVAPHLEAGSPLAEWMSAFMAHTFRTIESLHRDQVGDAVDLSLHDPVCVWYALTAE  340
               +  A     G  LA+ +  +           +R++ G      LHDP+ V  AL  E
Sbjct  154  DLERLAALGTPLGRFLADLLRFYAEF--------YRERFGID-GPPLHDPLAVAVALDPE  204

Query  341  DAGWKPSDASPEDIRVETTGQWTRGACIVDRRPR  374
                +       ++ VETTG  TRG  +VD R  
Sbjct  205  LFTTRRL-----NVDVETTGGLTRGQTVVDDRGG  233



Lambda      K        H        a         alpha
   0.319    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00007449

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0732    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00001993

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460086 pfam01156, IU_nuc_hydro, Inosine-uridine preferring nu...  73.8    3e-17


>CDD:460086 pfam01156, IU_nuc_hydro, Inosine-uridine preferring nucleoside 
hydrolase.  
Length=253

 Score = 73.8 bits (182),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 27/47 (57%), Positives = 32/47 (68%), Gaps = 0/47 (0%)

Query  42   NDPDTVTLVAVGPLTNLALASAEDAETFLRVKEVVVMGGAVNEPGNV  88
             +P  VTLVA GPLTNLALA   D E   ++KE+V+MGGA    GNV
Sbjct  66   REPGEVTLVATGPLTNLALALRLDPELAKKIKELVIMGGAFGVRGNV  112



Lambda      K        H        a         alpha
   0.313    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00001994

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain        57.5    1e-11


>CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain.  
Length=53

 Score = 57.5 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 34/54 (63%), Gaps = 3/54 (6%)

Query  160  RKTAHSLIERRRRSKMNEEFATLKDMIPACRGQDMH--KLSILQASIEYVNYLE  211
            R+ AH+  ERRRR ++N+ F  L++++P     D    K  IL+ +IEY+ +L+
Sbjct  1    RREAHNERERRRRDRINDAFDELRELLP-TLPPDKKLSKAEILRLAIEYIKHLQ  53



Lambda      K        H        a         alpha
   0.309    0.123    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 481536020


Query= TCONS_00007451

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.122    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00001996

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00007452

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00001997

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00001998

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00001999

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00007453

Length=671


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 852428620


Query= TCONS_00007454

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00002002

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00002000

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00002001

Length=747
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like...  66.7    6e-12


>CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This 
family includes FMO proteins, cyclohexanone mono-oxygenase 
and a number of different mono-oxygenases.
Length=531

 Score = 66.7 bits (163),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 45/243 (19%)

Query  5    KKVAIIGAGPSGLVTAKTLLHHFPEGTFSPSIFEKRHEIGGLWPISRSRKGSDSGSVSKD  64
            KKVA+IGAG SGL + K  L    EG   P+ FE+  +IGGLW   R  +  + G  S  
Sbjct  2    KKVAVIGAGVSGLASIKCCLE---EG-LEPTCFERSDDIGGLW---RFTENVEEGRAS--  52

Query  65   HGAAGPVNPSMRTNLSRFTVSFSDLAWESVLGGTDVPMFPQAWQVGRYLETYTERYLSDQ  124
                  +  S+ TN S+    FSD  +       D P F    +   Y   + + +   +
Sbjct  53   ------IYKSVITNTSKEMSCFSDFPFPE-----DYPNFMHNSKFLEYFRMFAKEFDLLK  101

Query  125  VVRLGCEVVHAVREVVGGRPRWTV--QWVQRSENEEQGDDTEQRTVETEYYDFLVVASGY  182
             ++    V       V  RP ++   QW   +E+E +    ++  V    +D ++V +G+
Sbjct  102  YIQFKTTVCS-----VKKRPDFSTSGQWEVVTEHEGK----QESAV----FDAVMVCTGH  148

Query  183  FSRPYTP--DIPGLAALAERTIHSSALRSLEDLDAIVEKGSDGGRLIVIGGSMSGVEAAS  240
             + P+ P    PG+     +  HS   +  E        G  G R++VIG   SG + A 
Sbjct  149  HTNPHLPLESFPGIEKFKGQYFHSRDYKHPE--------GFTGKRVLVIGIGNSGGDIAV  200

Query  241  SLA  243
             L+
Sbjct  201  ELS  203



Lambda      K        H        a         alpha
   0.316    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 950214256


Query= TCONS_00007455

Length=762
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like...  66.7    6e-12


>CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This 
family includes FMO proteins, cyclohexanone mono-oxygenase 
and a number of different mono-oxygenases.
Length=531

 Score = 66.7 bits (163),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 45/243 (19%)

Query  5    KKVAIIGAGPSGLVTAKTLLHHFPEGTFSPSIFEKRHEIGGLWPISRSRKGSDSGSVSKD  64
            KKVA+IGAG SGL + K  L    EG   P+ FE+  +IGGLW   R  +  + G  S  
Sbjct  2    KKVAVIGAGVSGLASIKCCLE---EG-LEPTCFERSDDIGGLW---RFTENVEEGRAS--  52

Query  65   HGAAGPVNPSMRTNLSRFTVSFSDLAWESVLGGTDVPMFPQAWQVGRYLETYTERYLSDQ  124
                  +  S+ TN S+    FSD  +       D P F    +   Y   + + +   +
Sbjct  53   ------IYKSVITNTSKEMSCFSDFPFPE-----DYPNFMHNSKFLEYFRMFAKEFDLLK  101

Query  125  VVRLGCEVVHAVREVVGGRPRWTV--QWVQRSENEEQGDDTEQRTVETEYYDFLVVASGY  182
             ++    V       V  RP ++   QW   +E+E +    ++  V    +D ++V +G+
Sbjct  102  YIQFKTTVCS-----VKKRPDFSTSGQWEVVTEHEGK----QESAV----FDAVMVCTGH  148

Query  183  FSRPYTP--DIPGLAALAERTIHSSALRSLEDLDAIVEKGSDGGRLIVIGGSMSGVEAAS  240
             + P+ P    PG+     +  HS   +  E        G  G R++VIG   SG + A 
Sbjct  149  HTNPHLPLESFPGIEKFKGQYFHSRDYKHPE--------GFTGKRVLVIGIGNSGGDIAV  200

Query  241  SLA  243
             L+
Sbjct  201  ELS  203



Lambda      K        H        a         alpha
   0.317    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 972041536


Query= TCONS_00002003

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00007456

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00007457

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00007458

Length=762
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like...  66.7    6e-12


>CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This 
family includes FMO proteins, cyclohexanone mono-oxygenase 
and a number of different mono-oxygenases.
Length=531

 Score = 66.7 bits (163),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 45/243 (19%)

Query  5    KKVAIIGAGPSGLVTAKTLLHHFPEGTFSPSIFEKRHEIGGLWPISRSRKGSDSGSVSKD  64
            KKVA+IGAG SGL + K  L    EG   P+ FE+  +IGGLW   R  +  + G  S  
Sbjct  2    KKVAVIGAGVSGLASIKCCLE---EG-LEPTCFERSDDIGGLW---RFTENVEEGRAS--  52

Query  65   HGAAGPVNPSMRTNLSRFTVSFSDLAWESVLGGTDVPMFPQAWQVGRYLETYTERYLSDQ  124
                  +  S+ TN S+    FSD  +       D P F    +   Y   + + +   +
Sbjct  53   ------IYKSVITNTSKEMSCFSDFPFPE-----DYPNFMHNSKFLEYFRMFAKEFDLLK  101

Query  125  VVRLGCEVVHAVREVVGGRPRWTV--QWVQRSENEEQGDDTEQRTVETEYYDFLVVASGY  182
             ++    V       V  RP ++   QW   +E+E +    ++  V    +D ++V +G+
Sbjct  102  YIQFKTTVCS-----VKKRPDFSTSGQWEVVTEHEGK----QESAV----FDAVMVCTGH  148

Query  183  FSRPYTP--DIPGLAALAERTIHSSALRSLEDLDAIVEKGSDGGRLIVIGGSMSGVEAAS  240
             + P+ P    PG+     +  HS   +  E        G  G R++VIG   SG + A 
Sbjct  149  HTNPHLPLESFPGIEKFKGQYFHSRDYKHPE--------GFTGKRVLVIGIGNSGGDIAV  200

Query  241  SLA  243
             L+
Sbjct  201  ELS  203



Lambda      K        H        a         alpha
   0.317    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 972041536


Query= TCONS_00002004

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464045 pfam13926, DUF4211, Domain of unknown function (DUF4211)   181     4e-57


>CDD:464045 pfam13926, DUF4211, Domain of unknown function (DUF4211).  
Length=138

 Score = 181 bits (462),  Expect = 4e-57, Method: Composition-based stats.
 Identities = 72/141 (51%), Positives = 94/141 (67%), Gaps = 8/141 (6%)

Query  133  DFVLEDDNAELGVPSSLEDLPFEFSRHAYKQLKEYFQDAVEWMVNNKINPAFPRS-----  187
            DF++EDD+ ELGVP   E+LP EFSR +++ LKE+F+  VEW+V+N I+P F RS     
Sbjct  1    DFIVEDDDDELGVPD--EELPLEFSRLSHQDLKEHFKVVVEWLVHNAIDPDFLRSLYDKD  58

Query  188  DPLYEVAFMKLEDEVKGRTGSQLVSSVWNVKFRRALLARPHVETTLYPITDNHPCDACNR  247
            D  Y VA  KL+DEV+G   S L SS W  +F++AL ARP +  T     D   CDACNR
Sbjct  59   DEYYLVALRKLDDEVQGLADSLLSSSAWKPEFKKALEARPELRITELDPKDGG-CDACNR  117

Query  248  SKHPASFDMKLYGKAYSLETL  268
            S HPA+F ++L GK Y+ ETL
Sbjct  118  SNHPATFTIRLSGKPYNKETL  138



Lambda      K        H        a         alpha
   0.313    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00007459

Length=391
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464045 pfam13926, DUF4211, Domain of unknown function (DUF4211)   181     4e-57


>CDD:464045 pfam13926, DUF4211, Domain of unknown function (DUF4211).  
Length=138

 Score = 181 bits (462),  Expect = 4e-57, Method: Composition-based stats.
 Identities = 72/141 (51%), Positives = 94/141 (67%), Gaps = 8/141 (6%)

Query  133  DFVLEDDNAELGVPSSLEDLPFEFSRHAYKQLKEYFQDAVEWMVNNKINPAFPRS-----  187
            DF++EDD+ ELGVP   E+LP EFSR +++ LKE+F+  VEW+V+N I+P F RS     
Sbjct  1    DFIVEDDDDELGVPD--EELPLEFSRLSHQDLKEHFKVVVEWLVHNAIDPDFLRSLYDKD  58

Query  188  DPLYEVAFMKLEDEVKGRTGSQLVSSVWNVKFRRALLARPHVETTLYPITDNHPCDACNR  247
            D  Y VA  KL+DEV+G   S L SS W  +F++AL ARP +  T     D   CDACNR
Sbjct  59   DEYYLVALRKLDDEVQGLADSLLSSSAWKPEFKKALEARPELRITELDPKDGG-CDACNR  117

Query  248  SKHPASFDMKLYGKAYSLETL  268
            S HPA+F ++L GK Y+ ETL
Sbjct  118  SNHPATFTIRLSGKPYNKETL  138



Lambda      K        H        a         alpha
   0.313    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00007460

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425812 pfam00675, Peptidase_M16, Insulinase (Peptidase family...  123     4e-34
CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive dom...  94.0    6e-23


>CDD:425812 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16). 
 
Length=149

 Score = 123 bits (312),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 69/113 (61%), Gaps = 0/113 (0%)

Query  1    MDRLAFKSTKSRTSDEMLETLESLGGNIQCASSRESLMYQSASFNSAVPATLGLLAETIR  60
            ++ +AFK TK   S+E+ E LE LGG++   +SRE+ +Y +   N  +P  +  LA+  R
Sbjct  37   LEHMAFKGTKKYPSNELEEELEKLGGSLNAFTSRENTVYYAEVLNDDLPKAVDRLADFFR  96

Query  61   DPLITDEEVLQQLATAEYEINEIWAKPELILPELVHMAAYKDNTLGNPLLCPR  113
            +PL T+ E+ ++     YE+  + ++P+L++ E +H AAY++  LG  LL P 
Sbjct  97   NPLFTESEIERERLVVLYEVEAVDSEPQLVVLENLHAAAYRNTPLGRSLLGPG  149


>CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.  Peptidase 
M16 consists of two structurally related domains. One 
is the active peptidase, whereas the other is inactive. The 
two domains hold the substrate like a clamp.
Length=181

 Score = 94.0 bits (234),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 61/280 (22%), Positives = 96/280 (34%), Gaps = 102/280 (36%)

Query  119  INKAVVERYREVFFKPERMVVAFAG-VPHEEAVKLTEQYFGDMKAANQAKGPVLSGTGIE  177
            + +  +  + +  + P+ MV+   G V HEE + L E+YFGD+ A+ + K          
Sbjct  2    LTREDLRDFYKKHYSPDNMVLVIVGDVDHEELLDLAEKYFGDLPASPKGK----------  51

Query  178  TTLSDSETAAQEGQVPTVPQFTPSSTITTTPTSKTQSVLSRLPFLKNLSTTASKPASVAP  237
                                                                        
Sbjct       ------------------------------------------------------------  

Query  238  LDPSLVQPSSLDLTRPSHYTGGFLSLPPIPPPANPMLPRLSYIHLAFEALPISS-PDIYA  296
                           P         L              +++ LAF   P+++  D  A
Sbjct  52   ---------------PRPPPLEPAKLKGREVVVPKKDEPQAHLALAFPGPPLNNDEDSLA  96

Query  297  LATLQTLLGGGGSFSAGGPGKGMYSRLYTNVLNQHGWVESCIAFNHSYTDSGIFGISASC  356
            L  L  LLGG           GM SRL+  +  + G   S  +FN SY+DSG+FGI A+ 
Sbjct  97   LDVLNELLGG-----------GMSSRLFQELREKEGLAYSVSSFNDSYSDSGLFGIYATV  145

Query  357  SPTRTTEMLEVMCRELQALTLDTGYSALQPQEVNRAKNQL  396
             P    E++E++  EL+ L  +     +  +E+ RAKNQL
Sbjct  146  DPENVDEVIELILEELEKLAQE----GVTEEELERAKNQL  181



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00002005

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425812 pfam00675, Peptidase_M16, Insulinase (Peptidase family...  123     4e-34
CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive dom...  94.0    6e-23


>CDD:425812 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16). 
 
Length=149

 Score = 123 bits (312),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 69/113 (61%), Gaps = 0/113 (0%)

Query  1    MDRLAFKSTKSRTSDEMLETLESLGGNIQCASSRESLMYQSASFNSAVPATLGLLAETIR  60
            ++ +AFK TK   S+E+ E LE LGG++   +SRE+ +Y +   N  +P  +  LA+  R
Sbjct  37   LEHMAFKGTKKYPSNELEEELEKLGGSLNAFTSRENTVYYAEVLNDDLPKAVDRLADFFR  96

Query  61   DPLITDEEVLQQLATAEYEINEIWAKPELILPELVHMAAYKDNTLGNPLLCPR  113
            +PL T+ E+ ++     YE+  + ++P+L++ E +H AAY++  LG  LL P 
Sbjct  97   NPLFTESEIERERLVVLYEVEAVDSEPQLVVLENLHAAAYRNTPLGRSLLGPG  149


>CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.  Peptidase 
M16 consists of two structurally related domains. One 
is the active peptidase, whereas the other is inactive. The 
two domains hold the substrate like a clamp.
Length=181

 Score = 94.0 bits (234),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 61/280 (22%), Positives = 96/280 (34%), Gaps = 102/280 (36%)

Query  119  INKAVVERYREVFFKPERMVVAFAG-VPHEEAVKLTEQYFGDMKAANQAKGPVLSGTGIE  177
            + +  +  + +  + P+ MV+   G V HEE + L E+YFGD+ A+ + K          
Sbjct  2    LTREDLRDFYKKHYSPDNMVLVIVGDVDHEELLDLAEKYFGDLPASPKGK----------  51

Query  178  TTLSDSETAAQEGQVPTVPQFTPSSTITTTPTSKTQSVLSRLPFLKNLSTTASKPASVAP  237
                                                                        
Sbjct       ------------------------------------------------------------  

Query  238  LDPSLVQPSSLDLTRPSHYTGGFLSLPPIPPPANPMLPRLSYIHLAFEALPISS-PDIYA  296
                           P         L              +++ LAF   P+++  D  A
Sbjct  52   ---------------PRPPPLEPAKLKGREVVVPKKDEPQAHLALAFPGPPLNNDEDSLA  96

Query  297  LATLQTLLGGGGSFSAGGPGKGMYSRLYTNVLNQHGWVESCIAFNHSYTDSGIFGISASC  356
            L  L  LLGG           GM SRL+  +  + G   S  +FN SY+DSG+FGI A+ 
Sbjct  97   LDVLNELLGG-----------GMSSRLFQELREKEGLAYSVSSFNDSYSDSGLFGIYATV  145

Query  357  SPTRTTEMLEVMCRELQALTLDTGYSALQPQEVNRAKNQL  396
             P    E++E++  EL+ L  +     +  +E+ RAKNQL
Sbjct  146  DPENVDEVIELILEELEKLAQE----GVTEEELERAKNQL  181



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00007461

Length=217
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464045 pfam13926, DUF4211, Domain of unknown function (DUF4211)   124     4e-37


>CDD:464045 pfam13926, DUF4211, Domain of unknown function (DUF4211).  
Length=138

 Score = 124 bits (314),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 48/99 (48%), Positives = 61/99 (62%), Gaps = 6/99 (6%)

Query  1    MVNNKINPAFPRS-----DPLYEVAFMKLEDEVKGRTGSQLVSSVWNVKFRRALLARPHV  55
            +V+N I+P F RS     D  Y VA  KL+DEV+G   S L SS W  +F++AL ARP +
Sbjct  41   LVHNAIDPDFLRSLYDKDDEYYLVALRKLDDEVQGLADSLLSSSAWKPEFKKALEARPEL  100

Query  56   ETTLYPITDNHPCDACNRSKHPASFDMKLYGKAYSLETL  94
              T     D   CDACNRS HPA+F ++L GK Y+ ETL
Sbjct  101  RITELDPKDGG-CDACNRSNHPATFTIRLSGKPYNKETL  138



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00007462

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464045 pfam13926, DUF4211, Domain of unknown function (DUF4211)   124     5e-37


>CDD:464045 pfam13926, DUF4211, Domain of unknown function (DUF4211).  
Length=138

 Score = 124 bits (314),  Expect = 5e-37, Method: Composition-based stats.
 Identities = 48/99 (48%), Positives = 61/99 (62%), Gaps = 6/99 (6%)

Query  1    MVNNKINPAFPRS-----DPLYEVAFMKLEDEVKGRTGSQLVSSVWNVKFRRALLARPHV  55
            +V+N I+P F RS     D  Y VA  KL+DEV+G   S L SS W  +F++AL ARP +
Sbjct  41   LVHNAIDPDFLRSLYDKDDEYYLVALRKLDDEVQGLADSLLSSSAWKPEFKKALEARPEL  100

Query  56   ETTLYPITDNHPCDACNRSKHPASFDMKLYGKAYSLETL  94
              T     D   CDACNRS HPA+F ++L GK Y+ ETL
Sbjct  101  RITELDPKDGG-CDACNRSNHPATFTIRLSGKPYNKETL  138



Lambda      K        H        a         alpha
   0.316    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00002006

Length=580
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464045 pfam13926, DUF4211, Domain of unknown function (DUF4211)   183     5e-56


>CDD:464045 pfam13926, DUF4211, Domain of unknown function (DUF4211).  
Length=138

 Score = 183 bits (466),  Expect = 5e-56, Method: Composition-based stats.
 Identities = 72/141 (51%), Positives = 94/141 (67%), Gaps = 8/141 (6%)

Query  322  DFVLEDDNAELGVPSSLEDLPFEFSRHAYKQLKEYFQDAVEWMVNNKINPAFPRS-----  376
            DF++EDD+ ELGVP   E+LP EFSR +++ LKE+F+  VEW+V+N I+P F RS     
Sbjct  1    DFIVEDDDDELGVPD--EELPLEFSRLSHQDLKEHFKVVVEWLVHNAIDPDFLRSLYDKD  58

Query  377  DPLYEVAFMKLEDEVKGRTGSQLVSSVWNVKFRRALLARPHVETTLYPITDNHPCDACNR  436
            D  Y VA  KL+DEV+G   S L SS W  +F++AL ARP +  T     D   CDACNR
Sbjct  59   DEYYLVALRKLDDEVQGLADSLLSSSAWKPEFKKALEARPELRITELDPKDGG-CDACNR  117

Query  437  SKHPASFDMKLYGKAYSLETL  457
            S HPA+F ++L GK Y+ ETL
Sbjct  118  SNHPATFTIRLSGKPYNKETL  138



Lambda      K        H        a         alpha
   0.311    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 729280864


Query= TCONS_00002008

Length=680
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  184     5e-53


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 184 bits (469),  Expect = 5e-53, Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 147/382 (38%), Gaps = 54/382 (14%)

Query  253  TDTLNLSSYNYLGFAQSEGPCADHAEDTLRKYGISAPSTRAEVGTQDLHAEVESLVASFV  312
            TD +NL S  YLG           A+         A  TR   G  D H E+   +A F+
Sbjct  1    TDKINLGSNEYLG-----DTLPAVAKAEKD---ALAGGTRNLYGPTDGHPELREALAKFL  52

Query  313  G--------KEASMVFSMGFGTNANIFP-ALVNKGCLIISDELNHASIRFGARLSGASIG  363
            G        +EA++VF  G G N       L N G  I+     +AS    ARL+G  + 
Sbjct  53   GRSPVLKLDREAAVVFGSGAGANIEALIFLLANPGDAILVPAPTYASYIRIARLAGGEVV  112

Query  364  MFK-------HNDMKDLEAKLREAISQGQPRTHRPWKKILVVVEGLYSMEGSMCNLPGL-  415
             +        H D   LEA L+E                +V+    ++  G++  L  L 
Sbjct  113  RYPLYDSNDFHLDFDALEAALKEKP-------------KVVLHTSPHNPTGTVATLEELE  159

Query  416  --IALKRRYKFHLFVDEAHSIGAIGPKGRGVCDYFSIDTKEVDILMGTLTKSFGANG---  470
              + L + +   L VDEA++    G     V     +      +++G+ +K+FG  G   
Sbjct  160  KLLDLAKEHNILLLVDEAYAGFVFGSPDA-VATRALLAEGPNLLVVGSFSKAFGLAGWRV  218

Query  471  GYIAADKAMIDKLRATNSGIFYGEAPAPAILAQISSALRIINGEIVPGQGEERLQRLAFN  530
            GYI  + A+I +LR      FY      A  A       + +  +V  + EE  QR+   
Sbjct  219  GYILGNAAVISQLRKLARP-FYSSTHLQAAAAAA-----LSDPLLVASELEEMRQRIKER  272

Query  531  SRYLRLGLKRLGFIVYGHDDSPIIPVLLFNPAKMPAFSHEMLRRKISVVVVGYPATPLVS  590
              YLR GL+  G  V     +    +   +P      +  +L      V  G    P V 
Sbjct  273  RDYLRDGLQAAGLSVLP-SQAGFFLLTGLDPETAKELAQVLLEEVGVYVTPGSS--PGVP  329

Query  591  SRARFCVSAAHTKEDLDRVLTA  612
               R  V A  T+E+L+ +L A
Sbjct  330  GWLRITV-AGGTEEELEELLEA  350



Lambda      K        H        a         alpha
   0.318    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 865701730


Query= TCONS_00002010

Length=680
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  184     5e-53


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 184 bits (469),  Expect = 5e-53, Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 147/382 (38%), Gaps = 54/382 (14%)

Query  253  TDTLNLSSYNYLGFAQSEGPCADHAEDTLRKYGISAPSTRAEVGTQDLHAEVESLVASFV  312
            TD +NL S  YLG           A+         A  TR   G  D H E+   +A F+
Sbjct  1    TDKINLGSNEYLG-----DTLPAVAKAEKD---ALAGGTRNLYGPTDGHPELREALAKFL  52

Query  313  G--------KEASMVFSMGFGTNANIFP-ALVNKGCLIISDELNHASIRFGARLSGASIG  363
            G        +EA++VF  G G N       L N G  I+     +AS    ARL+G  + 
Sbjct  53   GRSPVLKLDREAAVVFGSGAGANIEALIFLLANPGDAILVPAPTYASYIRIARLAGGEVV  112

Query  364  MFK-------HNDMKDLEAKLREAISQGQPRTHRPWKKILVVVEGLYSMEGSMCNLPGL-  415
             +        H D   LEA L+E                +V+    ++  G++  L  L 
Sbjct  113  RYPLYDSNDFHLDFDALEAALKEKP-------------KVVLHTSPHNPTGTVATLEELE  159

Query  416  --IALKRRYKFHLFVDEAHSIGAIGPKGRGVCDYFSIDTKEVDILMGTLTKSFGANG---  470
              + L + +   L VDEA++    G     V     +      +++G+ +K+FG  G   
Sbjct  160  KLLDLAKEHNILLLVDEAYAGFVFGSPDA-VATRALLAEGPNLLVVGSFSKAFGLAGWRV  218

Query  471  GYIAADKAMIDKLRATNSGIFYGEAPAPAILAQISSALRIINGEIVPGQGEERLQRLAFN  530
            GYI  + A+I +LR      FY      A  A       + +  +V  + EE  QR+   
Sbjct  219  GYILGNAAVISQLRKLARP-FYSSTHLQAAAAAA-----LSDPLLVASELEEMRQRIKER  272

Query  531  SRYLRLGLKRLGFIVYGHDDSPIIPVLLFNPAKMPAFSHEMLRRKISVVVVGYPATPLVS  590
              YLR GL+  G  V     +    +   +P      +  +L      V  G    P V 
Sbjct  273  RDYLRDGLQAAGLSVLP-SQAGFFLLTGLDPETAKELAQVLLEEVGVYVTPGSS--PGVP  329

Query  591  SRARFCVSAAHTKEDLDRVLTA  612
               R  V A  T+E+L+ +L A
Sbjct  330  GWLRITV-AGGTEEELEELLEA  350



Lambda      K        H        a         alpha
   0.318    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 865701730


Query= TCONS_00002009

Length=680
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  184     5e-53


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 184 bits (469),  Expect = 5e-53, Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 147/382 (38%), Gaps = 54/382 (14%)

Query  253  TDTLNLSSYNYLGFAQSEGPCADHAEDTLRKYGISAPSTRAEVGTQDLHAEVESLVASFV  312
            TD +NL S  YLG           A+         A  TR   G  D H E+   +A F+
Sbjct  1    TDKINLGSNEYLG-----DTLPAVAKAEKD---ALAGGTRNLYGPTDGHPELREALAKFL  52

Query  313  G--------KEASMVFSMGFGTNANIFP-ALVNKGCLIISDELNHASIRFGARLSGASIG  363
            G        +EA++VF  G G N       L N G  I+     +AS    ARL+G  + 
Sbjct  53   GRSPVLKLDREAAVVFGSGAGANIEALIFLLANPGDAILVPAPTYASYIRIARLAGGEVV  112

Query  364  MFK-------HNDMKDLEAKLREAISQGQPRTHRPWKKILVVVEGLYSMEGSMCNLPGL-  415
             +        H D   LEA L+E                +V+    ++  G++  L  L 
Sbjct  113  RYPLYDSNDFHLDFDALEAALKEKP-------------KVVLHTSPHNPTGTVATLEELE  159

Query  416  --IALKRRYKFHLFVDEAHSIGAIGPKGRGVCDYFSIDTKEVDILMGTLTKSFGANG---  470
              + L + +   L VDEA++    G     V     +      +++G+ +K+FG  G   
Sbjct  160  KLLDLAKEHNILLLVDEAYAGFVFGSPDA-VATRALLAEGPNLLVVGSFSKAFGLAGWRV  218

Query  471  GYIAADKAMIDKLRATNSGIFYGEAPAPAILAQISSALRIINGEIVPGQGEERLQRLAFN  530
            GYI  + A+I +LR      FY      A  A       + +  +V  + EE  QR+   
Sbjct  219  GYILGNAAVISQLRKLARP-FYSSTHLQAAAAAA-----LSDPLLVASELEEMRQRIKER  272

Query  531  SRYLRLGLKRLGFIVYGHDDSPIIPVLLFNPAKMPAFSHEMLRRKISVVVVGYPATPLVS  590
              YLR GL+  G  V     +    +   +P      +  +L      V  G    P V 
Sbjct  273  RDYLRDGLQAAGLSVLP-SQAGFFLLTGLDPETAKELAQVLLEEVGVYVTPGSS--PGVP  329

Query  591  SRARFCVSAAHTKEDLDRVLTA  612
               R  V A  T+E+L+ +L A
Sbjct  330  GWLRITV-AGGTEEELEELLEA  350



Lambda      K        H        a         alpha
   0.318    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 865701730


Query= TCONS_00002011

Length=680
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  184     5e-53


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 184 bits (469),  Expect = 5e-53, Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 147/382 (38%), Gaps = 54/382 (14%)

Query  253  TDTLNLSSYNYLGFAQSEGPCADHAEDTLRKYGISAPSTRAEVGTQDLHAEVESLVASFV  312
            TD +NL S  YLG           A+         A  TR   G  D H E+   +A F+
Sbjct  1    TDKINLGSNEYLG-----DTLPAVAKAEKD---ALAGGTRNLYGPTDGHPELREALAKFL  52

Query  313  G--------KEASMVFSMGFGTNANIFP-ALVNKGCLIISDELNHASIRFGARLSGASIG  363
            G        +EA++VF  G G N       L N G  I+     +AS    ARL+G  + 
Sbjct  53   GRSPVLKLDREAAVVFGSGAGANIEALIFLLANPGDAILVPAPTYASYIRIARLAGGEVV  112

Query  364  MFK-------HNDMKDLEAKLREAISQGQPRTHRPWKKILVVVEGLYSMEGSMCNLPGL-  415
             +        H D   LEA L+E                +V+    ++  G++  L  L 
Sbjct  113  RYPLYDSNDFHLDFDALEAALKEKP-------------KVVLHTSPHNPTGTVATLEELE  159

Query  416  --IALKRRYKFHLFVDEAHSIGAIGPKGRGVCDYFSIDTKEVDILMGTLTKSFGANG---  470
              + L + +   L VDEA++    G     V     +      +++G+ +K+FG  G   
Sbjct  160  KLLDLAKEHNILLLVDEAYAGFVFGSPDA-VATRALLAEGPNLLVVGSFSKAFGLAGWRV  218

Query  471  GYIAADKAMIDKLRATNSGIFYGEAPAPAILAQISSALRIINGEIVPGQGEERLQRLAFN  530
            GYI  + A+I +LR      FY      A  A       + +  +V  + EE  QR+   
Sbjct  219  GYILGNAAVISQLRKLARP-FYSSTHLQAAAAAA-----LSDPLLVASELEEMRQRIKER  272

Query  531  SRYLRLGLKRLGFIVYGHDDSPIIPVLLFNPAKMPAFSHEMLRRKISVVVVGYPATPLVS  590
              YLR GL+  G  V     +    +   +P      +  +L      V  G    P V 
Sbjct  273  RDYLRDGLQAAGLSVLP-SQAGFFLLTGLDPETAKELAQVLLEEVGVYVTPGSS--PGVP  329

Query  591  SRARFCVSAAHTKEDLDRVLTA  612
               R  V A  T+E+L+ +L A
Sbjct  330  GWLRITV-AGGTEEELEELLEA  350



Lambda      K        H        a         alpha
   0.318    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0769    0.140     1.90     42.6     43.6 

Effective search space used: 865701730


Query= TCONS_00002012

Length=680
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  184     5e-53


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 184 bits (469),  Expect = 5e-53, Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 147/382 (38%), Gaps = 54/382 (14%)

Query  253  TDTLNLSSYNYLGFAQSEGPCADHAEDTLRKYGISAPSTRAEVGTQDLHAEVESLVASFV  312
            TD +NL S  YLG           A+         A  TR   G  D H E+   +A F+
Sbjct  1    TDKINLGSNEYLG-----DTLPAVAKAEKD---ALAGGTRNLYGPTDGHPELREALAKFL  52

Query  313  G--------KEASMVFSMGFGTNANIFP-ALVNKGCLIISDELNHASIRFGARLSGASIG  363
            G        +EA++VF  G G N       L N G  I+     +AS    ARL+G  + 
Sbjct  53   GRSPVLKLDREAAVVFGSGAGANIEALIFLLANPGDAILVPAPTYASYIRIARLAGGEVV  112

Query  364  MFK-------HNDMKDLEAKLREAISQGQPRTHRPWKKILVVVEGLYSMEGSMCNLPGL-  415
             +        H D   LEA L+E                +V+    ++  G++  L  L 
Sbjct  113  RYPLYDSNDFHLDFDALEAALKEKP-------------KVVLHTSPHNPTGTVATLEELE  159

Query  416  --IALKRRYKFHLFVDEAHSIGAIGPKGRGVCDYFSIDTKEVDILMGTLTKSFGANG---  470
              + L + +   L VDEA++    G     V     +      +++G+ +K+FG  G   
Sbjct  160  KLLDLAKEHNILLLVDEAYAGFVFGSPDA-VATRALLAEGPNLLVVGSFSKAFGLAGWRV  218

Query  471  GYIAADKAMIDKLRATNSGIFYGEAPAPAILAQISSALRIINGEIVPGQGEERLQRLAFN  530
            GYI  + A+I +LR      FY      A  A       + +  +V  + EE  QR+   
Sbjct  219  GYILGNAAVISQLRKLARP-FYSSTHLQAAAAAA-----LSDPLLVASELEEMRQRIKER  272

Query  531  SRYLRLGLKRLGFIVYGHDDSPIIPVLLFNPAKMPAFSHEMLRRKISVVVVGYPATPLVS  590
              YLR GL+  G  V     +    +   +P      +  +L      V  G    P V 
Sbjct  273  RDYLRDGLQAAGLSVLP-SQAGFFLLTGLDPETAKELAQVLLEEVGVYVTPGSS--PGVP  329

Query  591  SRARFCVSAAHTKEDLDRVLTA  612
               R  V A  T+E+L+ +L A
Sbjct  330  GWLRITV-AGGTEEELEELLEA  350



Lambda      K        H        a         alpha
   0.318    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 865701730


Query= TCONS_00002013

Length=680
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  184     5e-53


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 184 bits (469),  Expect = 5e-53, Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 147/382 (38%), Gaps = 54/382 (14%)

Query  253  TDTLNLSSYNYLGFAQSEGPCADHAEDTLRKYGISAPSTRAEVGTQDLHAEVESLVASFV  312
            TD +NL S  YLG           A+         A  TR   G  D H E+   +A F+
Sbjct  1    TDKINLGSNEYLG-----DTLPAVAKAEKD---ALAGGTRNLYGPTDGHPELREALAKFL  52

Query  313  G--------KEASMVFSMGFGTNANIFP-ALVNKGCLIISDELNHASIRFGARLSGASIG  363
            G        +EA++VF  G G N       L N G  I+     +AS    ARL+G  + 
Sbjct  53   GRSPVLKLDREAAVVFGSGAGANIEALIFLLANPGDAILVPAPTYASYIRIARLAGGEVV  112

Query  364  MFK-------HNDMKDLEAKLREAISQGQPRTHRPWKKILVVVEGLYSMEGSMCNLPGL-  415
             +        H D   LEA L+E                +V+    ++  G++  L  L 
Sbjct  113  RYPLYDSNDFHLDFDALEAALKEKP-------------KVVLHTSPHNPTGTVATLEELE  159

Query  416  --IALKRRYKFHLFVDEAHSIGAIGPKGRGVCDYFSIDTKEVDILMGTLTKSFGANG---  470
              + L + +   L VDEA++    G     V     +      +++G+ +K+FG  G   
Sbjct  160  KLLDLAKEHNILLLVDEAYAGFVFGSPDA-VATRALLAEGPNLLVVGSFSKAFGLAGWRV  218

Query  471  GYIAADKAMIDKLRATNSGIFYGEAPAPAILAQISSALRIINGEIVPGQGEERLQRLAFN  530
            GYI  + A+I +LR      FY      A  A       + +  +V  + EE  QR+   
Sbjct  219  GYILGNAAVISQLRKLARP-FYSSTHLQAAAAAA-----LSDPLLVASELEEMRQRIKER  272

Query  531  SRYLRLGLKRLGFIVYGHDDSPIIPVLLFNPAKMPAFSHEMLRRKISVVVVGYPATPLVS  590
              YLR GL+  G  V     +    +   +P      +  +L      V  G    P V 
Sbjct  273  RDYLRDGLQAAGLSVLP-SQAGFFLLTGLDPETAKELAQVLLEEVGVYVTPGSS--PGVP  329

Query  591  SRARFCVSAAHTKEDLDRVLTA  612
               R  V A  T+E+L+ +L A
Sbjct  330  GWLRITV-AGGTEEELEELLEA  350



Lambda      K        H        a         alpha
   0.318    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 865701730


Query= TCONS_00002014

Length=348


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.122    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00002015

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00007464

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00002017

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00002018

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00007465

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00007466

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00007467

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00007468

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00007469

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00002020

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00002022

Length=724
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459775 pfam00350, Dynamin_N, Dynamin family                       189     6e-57


>CDD:459775 pfam00350, Dynamin_N, Dynamin family.  
Length=168

 Score = 189 bits (482),  Expect = 6e-57, Method: Composition-based stats.
 Identities = 75/181 (41%), Positives = 102/181 (56%), Gaps = 19/181 (10%)

Query  29   IVVIGSQSSGKSSVLEAIVGHEFLPKGTNMVTRRPIELTLVNTPNAQS-----EYGEFPA  83
            I V+G QSSGKSSVL A++G + LP+G    TRRP  L L  +P A       EY +   
Sbjct  1    IAVVGDQSSGKSSVLNALLGRDILPRGPGPTTRRPTVLRLGESPGASEGAVKVEYKDG--  58

Query  84   LGLGKITDFSQIQRTLTD-LNLAVPERDCVSDDPIKLTIYSPNVPDLSLIDLPGYIQVAG  142
                K  DFS+++  +             +S +PI L I SP VP L+L+D PG   VA 
Sbjct  59   --EKKFEDFSELREEIEKETEKIAGTGKGISSEPIVLEILSPLVPGLTLVDTPGLDSVAV  116

Query  143  KDQPPELKQKIADLCDKYIQPPNVILAISAADVDLANSTALRASRRVDPRGERTIGVITK  202
             DQ         +L  +YI+P ++ILA++ A+VDL+ S AL  +R VDP G+RTIGV+TK
Sbjct  117  GDQ---------ELTKEYIKPADIILAVTPANVDLSTSEALFLAREVDPNGKRTIGVLTK  167

Query  203  M  203
             
Sbjct  168  A  168



Lambda      K        H        a         alpha
   0.317    0.134    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 916745760


Query= TCONS_00002023

Length=724
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459775 pfam00350, Dynamin_N, Dynamin family                       189     6e-57


>CDD:459775 pfam00350, Dynamin_N, Dynamin family.  
Length=168

 Score = 189 bits (482),  Expect = 6e-57, Method: Composition-based stats.
 Identities = 75/181 (41%), Positives = 102/181 (56%), Gaps = 19/181 (10%)

Query  29   IVVIGSQSSGKSSVLEAIVGHEFLPKGTNMVTRRPIELTLVNTPNAQS-----EYGEFPA  83
            I V+G QSSGKSSVL A++G + LP+G    TRRP  L L  +P A       EY +   
Sbjct  1    IAVVGDQSSGKSSVLNALLGRDILPRGPGPTTRRPTVLRLGESPGASEGAVKVEYKDG--  58

Query  84   LGLGKITDFSQIQRTLTD-LNLAVPERDCVSDDPIKLTIYSPNVPDLSLIDLPGYIQVAG  142
                K  DFS+++  +             +S +PI L I SP VP L+L+D PG   VA 
Sbjct  59   --EKKFEDFSELREEIEKETEKIAGTGKGISSEPIVLEILSPLVPGLTLVDTPGLDSVAV  116

Query  143  KDQPPELKQKIADLCDKYIQPPNVILAISAADVDLANSTALRASRRVDPRGERTIGVITK  202
             DQ         +L  +YI+P ++ILA++ A+VDL+ S AL  +R VDP G+RTIGV+TK
Sbjct  117  GDQ---------ELTKEYIKPADIILAVTPANVDLSTSEALFLAREVDPNGKRTIGVLTK  167

Query  203  M  203
             
Sbjct  168  A  168



Lambda      K        H        a         alpha
   0.317    0.134    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 916745760


Query= TCONS_00007470

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  65.8    3e-13


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 65.8 bits (161),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 49/138 (36%), Gaps = 13/138 (9%)

Query  117  LVILGTGWGSVSLLKKLDTENYNVVVIS-PRNYFLFTPLLPSCTTGQVEHRSIMEPIRNI  175
            +V++G G   ++    L      V +I           +L     G  E   I     ++
Sbjct  3    VVVIGGGPAGLAAALTLAQLGGKVTLIEDEGTCPYGGCVLSKALLGAAEAPEIASLWADL  62

Query  176  LRQKKAHVKFYEA--------EATKIDYEKRVVYISDDSEIKGDISHTEVPFDMLVVGVG  227
             ++K+  VK            E   ID   + V + +  +  G      + +D LV+  G
Sbjct  63   YKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEELVDGDG----ETITYDRLVIATG  118

Query  228  AENATFGIKGVKEHSCFL  245
            A      I GV+ +  FL
Sbjct  119  ARPRLPPIPGVELNVGFL  136



Lambda      K        H        a         alpha
   0.320    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00002024

Length=581
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  135     4e-36


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 135 bits (341),  Expect = 4e-36, Method: Composition-based stats.
 Identities = 73/352 (21%), Positives = 123/352 (35%), Gaps = 71/352 (20%)

Query  117  LVILGTGWGSVSLLKKLDTENYNVVVIS-PRNYFLFTPLLPSCTTGQVEHRSIMEPIRNI  175
            +V++G G   ++    L      V +I           +L     G  E   I     ++
Sbjct  3    VVVIGGGPAGLAAALTLAQLGGKVTLIEDEGTCPYGGCVLSKALLGAAEAPEIASLWADL  62

Query  176  LRQKKAHVKFYEA--------EATKIDYEKRVVYISDDSEIKGDISHTEVPFDMLVVGVG  227
             ++K+  VK            E   ID   + V + +  +  G      + +D LV+  G
Sbjct  63   YKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEELVDGDG----ETITYDRLVIATG  118

Query  228  AENATFGIKGVKEHSCFL-KEVGDAQKIRKRIMDC--------VETAMFKDQPEEEVKRL  278
            A      I GV+ +  FL + +  A+ +R +++              +            
Sbjct  119  ARPRLPPIPGVELNVGFLVRTLDSAEALRLKLLPKRVVVVGGGY-IGV------------  165

Query  279  LHMVVVGGGPTGVEFAGELQDFFNEDLKKWIPEIKDNFHVTLVEALPNVLPMFSKQLIDY  338
                         E A  L                    VTL+EAL  +L  F +++   
Sbjct  166  -------------ELAAALAKL--------------GKEVTLIEALDRLLRAFDEEISAA  198

Query  339  TESTFKEEAITIRTKTMVKNVTDKYIEAEVTKPDGTKELETIPYGLLVWATGNAVRNVVR  398
             E   ++  + +R  T VK +       EV   DGT     I   L+V A G   R    
Sbjct  199  LEKALEKNGVEVRLGTSVKEIIGDGDGVEVILKDGT----EIDADLVVVAIG---RRPNT  251

Query  399  DLMNQIPAQKNSRRGLAVNEYLVVNGTENVWAVGDCAVTNYAPTAQVASQEG  450
            +L+     + + R G+ V+EYL  +    ++A GDC V      AQ A  +G
Sbjct  252  ELLEAAGLELDERGGIVVDEYLRTS-VPGIYAAGDCRVGGPE-LAQNAVAQG  301



Lambda      K        H        a         alpha
   0.318    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00007471

Length=581
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  135     4e-36


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 135 bits (341),  Expect = 4e-36, Method: Composition-based stats.
 Identities = 73/352 (21%), Positives = 123/352 (35%), Gaps = 71/352 (20%)

Query  117  LVILGTGWGSVSLLKKLDTENYNVVVIS-PRNYFLFTPLLPSCTTGQVEHRSIMEPIRNI  175
            +V++G G   ++    L      V +I           +L     G  E   I     ++
Sbjct  3    VVVIGGGPAGLAAALTLAQLGGKVTLIEDEGTCPYGGCVLSKALLGAAEAPEIASLWADL  62

Query  176  LRQKKAHVKFYEA--------EATKIDYEKRVVYISDDSEIKGDISHTEVPFDMLVVGVG  227
             ++K+  VK            E   ID   + V + +  +  G      + +D LV+  G
Sbjct  63   YKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEELVDGDG----ETITYDRLVIATG  118

Query  228  AENATFGIKGVKEHSCFL-KEVGDAQKIRKRIMDC--------VETAMFKDQPEEEVKRL  278
            A      I GV+ +  FL + +  A+ +R +++              +            
Sbjct  119  ARPRLPPIPGVELNVGFLVRTLDSAEALRLKLLPKRVVVVGGGY-IGV------------  165

Query  279  LHMVVVGGGPTGVEFAGELQDFFNEDLKKWIPEIKDNFHVTLVEALPNVLPMFSKQLIDY  338
                         E A  L                    VTL+EAL  +L  F +++   
Sbjct  166  -------------ELAAALAKL--------------GKEVTLIEALDRLLRAFDEEISAA  198

Query  339  TESTFKEEAITIRTKTMVKNVTDKYIEAEVTKPDGTKELETIPYGLLVWATGNAVRNVVR  398
             E   ++  + +R  T VK +       EV   DGT     I   L+V A G   R    
Sbjct  199  LEKALEKNGVEVRLGTSVKEIIGDGDGVEVILKDGT----EIDADLVVVAIG---RRPNT  251

Query  399  DLMNQIPAQKNSRRGLAVNEYLVVNGTENVWAVGDCAVTNYAPTAQVASQEG  450
            +L+     + + R G+ V+EYL  +    ++A GDC V      AQ A  +G
Sbjct  252  ELLEAAGLELDERGGIVVDEYLRTS-VPGIYAAGDCRVGGPE-LAQNAVAQG  301



Lambda      K        H        a         alpha
   0.318    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00002021

Length=724
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459775 pfam00350, Dynamin_N, Dynamin family                       189     6e-57


>CDD:459775 pfam00350, Dynamin_N, Dynamin family.  
Length=168

 Score = 189 bits (482),  Expect = 6e-57, Method: Composition-based stats.
 Identities = 75/181 (41%), Positives = 102/181 (56%), Gaps = 19/181 (10%)

Query  29   IVVIGSQSSGKSSVLEAIVGHEFLPKGTNMVTRRPIELTLVNTPNAQS-----EYGEFPA  83
            I V+G QSSGKSSVL A++G + LP+G    TRRP  L L  +P A       EY +   
Sbjct  1    IAVVGDQSSGKSSVLNALLGRDILPRGPGPTTRRPTVLRLGESPGASEGAVKVEYKDG--  58

Query  84   LGLGKITDFSQIQRTLTD-LNLAVPERDCVSDDPIKLTIYSPNVPDLSLIDLPGYIQVAG  142
                K  DFS+++  +             +S +PI L I SP VP L+L+D PG   VA 
Sbjct  59   --EKKFEDFSELREEIEKETEKIAGTGKGISSEPIVLEILSPLVPGLTLVDTPGLDSVAV  116

Query  143  KDQPPELKQKIADLCDKYIQPPNVILAISAADVDLANSTALRASRRVDPRGERTIGVITK  202
             DQ         +L  +YI+P ++ILA++ A+VDL+ S AL  +R VDP G+RTIGV+TK
Sbjct  117  GDQ---------ELTKEYIKPADIILAVTPANVDLSTSEALFLAREVDPNGKRTIGVLTK  167

Query  203  M  203
             
Sbjct  168  A  168



Lambda      K        H        a         alpha
   0.317    0.134    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 916745760


Query= TCONS_00002026

Length=724
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459775 pfam00350, Dynamin_N, Dynamin family                       189     6e-57


>CDD:459775 pfam00350, Dynamin_N, Dynamin family.  
Length=168

 Score = 189 bits (482),  Expect = 6e-57, Method: Composition-based stats.
 Identities = 75/181 (41%), Positives = 102/181 (56%), Gaps = 19/181 (10%)

Query  29   IVVIGSQSSGKSSVLEAIVGHEFLPKGTNMVTRRPIELTLVNTPNAQS-----EYGEFPA  83
            I V+G QSSGKSSVL A++G + LP+G    TRRP  L L  +P A       EY +   
Sbjct  1    IAVVGDQSSGKSSVLNALLGRDILPRGPGPTTRRPTVLRLGESPGASEGAVKVEYKDG--  58

Query  84   LGLGKITDFSQIQRTLTD-LNLAVPERDCVSDDPIKLTIYSPNVPDLSLIDLPGYIQVAG  142
                K  DFS+++  +             +S +PI L I SP VP L+L+D PG   VA 
Sbjct  59   --EKKFEDFSELREEIEKETEKIAGTGKGISSEPIVLEILSPLVPGLTLVDTPGLDSVAV  116

Query  143  KDQPPELKQKIADLCDKYIQPPNVILAISAADVDLANSTALRASRRVDPRGERTIGVITK  202
             DQ         +L  +YI+P ++ILA++ A+VDL+ S AL  +R VDP G+RTIGV+TK
Sbjct  117  GDQ---------ELTKEYIKPADIILAVTPANVDLSTSEALFLAREVDPNGKRTIGVLTK  167

Query  203  M  203
             
Sbjct  168  A  168



Lambda      K        H        a         alpha
   0.317    0.134    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 916745760


Query= TCONS_00002027

Length=372


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 446726320


Query= TCONS_00002028

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  66.9    6e-16


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 66.9 bits (164),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 31/69 (45%), Positives = 40/69 (58%), Gaps = 5/69 (7%)

Query  98   YVGNLTPYTTQNDLVPLFHNFGYVLETRLQAD-----RGFAFIKMDTHENAAMAICQLNG  152
            +VGNL P TT+ DL  LF  FG +   RL  D     +GFAF++ +  E+A  AI  LNG
Sbjct  2    FVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEALNG  61

Query  153  YNVNGRPLK  161
              + GR LK
Sbjct  62   KELGGRELK  70



Lambda      K        H        a         alpha
   0.323    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00002029

Length=323


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.129    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00007473

Length=320


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.128    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00002030

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00002031

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.129    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00002032

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00002033

Length=709


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 908470640


Query= TCONS_00002034

Length=709


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 908470640


Query= TCONS_00002035

Length=814


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0613    0.140     1.90     42.6     43.6 

Effective search space used: 1047709440


Query= TCONS_00002038

Length=542


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682843766


Query= TCONS_00002037

Length=542


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682843766


Query= TCONS_00002036

Length=495


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00007475

Length=620


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789057984


Query= TCONS_00007474

Length=328


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00007477

Length=328


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00002039

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432442 pfam12271, Chs3p, Chitin synthase III catalytic subuni...  279     7e-96


>CDD:432442 pfam12271, Chs3p, Chitin synthase III catalytic subunit.  This 
family of proteins is found in eukaryotes. Proteins in this 
family are typically between 288 and 332 amino acids in length. 
This family is the catalytic domain of chitin synthase 
III. Chitin is a major component of fungal cell walls and this 
enzyme is responsible for its formation.
Length=283

 Score = 279 bits (715),  Expect = 7e-96, Method: Composition-based stats.
 Identities = 118/180 (66%), Positives = 139/180 (77%), Gaps = 1/180 (1%)

Query  1    MALTICSLVIDAGVVPPRSGPFPYFVAVQNGLSSALCTCLLINGFVGFQLYEDGTFLSVW  60
            + LTICSL +D GV PP S  +PYFVAV  GL SA C CLLINGFVGFQL+EDGT LS+W
Sbjct  92   ILLTICSLFVDGGVSPPGSAVYPYFVAVHIGLISATCWCLLINGFVGFQLWEDGTPLSLW  151

Query  61   LIRLTSAVMFVVSFLISLLTFKSW-GGMSPTNTIALFVVLYILNAISIAIYLVMQLLLVM  119
            L+R +S V+F+ +F ISL TFKSW GG   TNTIALFV+ Y+LNAI + IY V+QL+LV+
Sbjct  152  LLRGSSLVLFIGTFYISLDTFKSWTGGFDSTNTIALFVLYYLLNAIFLVIYFVLQLILVL  211

Query  120  NTLEDRWPLGHIAFGVIVFICGQVLLYGFSDTICDNVQHYLDGLFFATFCNLLAVMMVYK  179
              L +RWPLG+I  GV  F+ GQVLLY FS  IC+ V HY+DGLFF T CNLLAVMMVYK
Sbjct  212  RVLGERWPLGYILLGVFFFVIGQVLLYVFSVHICEGVSHYIDGLFFGTLCNLLAVMMVYK  271



Lambda      K        H        a         alpha
   0.333    0.147    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00007478

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432442 pfam12271, Chs3p, Chitin synthase III catalytic subuni...  279     7e-96


>CDD:432442 pfam12271, Chs3p, Chitin synthase III catalytic subunit.  This 
family of proteins is found in eukaryotes. Proteins in this 
family are typically between 288 and 332 amino acids in length. 
This family is the catalytic domain of chitin synthase 
III. Chitin is a major component of fungal cell walls and this 
enzyme is responsible for its formation.
Length=283

 Score = 279 bits (715),  Expect = 7e-96, Method: Composition-based stats.
 Identities = 118/180 (66%), Positives = 139/180 (77%), Gaps = 1/180 (1%)

Query  1    MALTICSLVIDAGVVPPRSGPFPYFVAVQNGLSSALCTCLLINGFVGFQLYEDGTFLSVW  60
            + LTICSL +D GV PP S  +PYFVAV  GL SA C CLLINGFVGFQL+EDGT LS+W
Sbjct  92   ILLTICSLFVDGGVSPPGSAVYPYFVAVHIGLISATCWCLLINGFVGFQLWEDGTPLSLW  151

Query  61   LIRLTSAVMFVVSFLISLLTFKSW-GGMSPTNTIALFVVLYILNAISIAIYLVMQLLLVM  119
            L+R +S V+F+ +F ISL TFKSW GG   TNTIALFV+ Y+LNAI + IY V+QL+LV+
Sbjct  152  LLRGSSLVLFIGTFYISLDTFKSWTGGFDSTNTIALFVLYYLLNAIFLVIYFVLQLILVL  211

Query  120  NTLEDRWPLGHIAFGVIVFICGQVLLYGFSDTICDNVQHYLDGLFFATFCNLLAVMMVYK  179
              L +RWPLG+I  GV  F+ GQVLLY FS  IC+ V HY+DGLFF T CNLLAVMMVYK
Sbjct  212  RVLGERWPLGYILLGVFFFVIGQVLLYVFSVHICEGVSHYIDGLFFGTLCNLLAVMMVYK  271



Lambda      K        H        a         alpha
   0.333    0.147    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00007479

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432442 pfam12271, Chs3p, Chitin synthase III catalytic subuni...  279     7e-96


>CDD:432442 pfam12271, Chs3p, Chitin synthase III catalytic subunit.  This 
family of proteins is found in eukaryotes. Proteins in this 
family are typically between 288 and 332 amino acids in length. 
This family is the catalytic domain of chitin synthase 
III. Chitin is a major component of fungal cell walls and this 
enzyme is responsible for its formation.
Length=283

 Score = 279 bits (715),  Expect = 7e-96, Method: Composition-based stats.
 Identities = 118/180 (66%), Positives = 139/180 (77%), Gaps = 1/180 (1%)

Query  1    MALTICSLVIDAGVVPPRSGPFPYFVAVQNGLSSALCTCLLINGFVGFQLYEDGTFLSVW  60
            + LTICSL +D GV PP S  +PYFVAV  GL SA C CLLINGFVGFQL+EDGT LS+W
Sbjct  92   ILLTICSLFVDGGVSPPGSAVYPYFVAVHIGLISATCWCLLINGFVGFQLWEDGTPLSLW  151

Query  61   LIRLTSAVMFVVSFLISLLTFKSW-GGMSPTNTIALFVVLYILNAISIAIYLVMQLLLVM  119
            L+R +S V+F+ +F ISL TFKSW GG   TNTIALFV+ Y+LNAI + IY V+QL+LV+
Sbjct  152  LLRGSSLVLFIGTFYISLDTFKSWTGGFDSTNTIALFVLYYLLNAIFLVIYFVLQLILVL  211

Query  120  NTLEDRWPLGHIAFGVIVFICGQVLLYGFSDTICDNVQHYLDGLFFATFCNLLAVMMVYK  179
              L +RWPLG+I  GV  F+ GQVLLY FS  IC+ V HY+DGLFF T CNLLAVMMVYK
Sbjct  212  RVLGERWPLGYILLGVFFFVIGQVLLYVFSVHICEGVSHYIDGLFFGTLCNLLAVMMVYK  271



Lambda      K        H        a         alpha
   0.333    0.147    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00007480

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432442 pfam12271, Chs3p, Chitin synthase III catalytic subuni...  279     7e-96


>CDD:432442 pfam12271, Chs3p, Chitin synthase III catalytic subunit.  This 
family of proteins is found in eukaryotes. Proteins in this 
family are typically between 288 and 332 amino acids in length. 
This family is the catalytic domain of chitin synthase 
III. Chitin is a major component of fungal cell walls and this 
enzyme is responsible for its formation.
Length=283

 Score = 279 bits (715),  Expect = 7e-96, Method: Composition-based stats.
 Identities = 118/180 (66%), Positives = 139/180 (77%), Gaps = 1/180 (1%)

Query  1    MALTICSLVIDAGVVPPRSGPFPYFVAVQNGLSSALCTCLLINGFVGFQLYEDGTFLSVW  60
            + LTICSL +D GV PP S  +PYFVAV  GL SA C CLLINGFVGFQL+EDGT LS+W
Sbjct  92   ILLTICSLFVDGGVSPPGSAVYPYFVAVHIGLISATCWCLLINGFVGFQLWEDGTPLSLW  151

Query  61   LIRLTSAVMFVVSFLISLLTFKSW-GGMSPTNTIALFVVLYILNAISIAIYLVMQLLLVM  119
            L+R +S V+F+ +F ISL TFKSW GG   TNTIALFV+ Y+LNAI + IY V+QL+LV+
Sbjct  152  LLRGSSLVLFIGTFYISLDTFKSWTGGFDSTNTIALFVLYYLLNAIFLVIYFVLQLILVL  211

Query  120  NTLEDRWPLGHIAFGVIVFICGQVLLYGFSDTICDNVQHYLDGLFFATFCNLLAVMMVYK  179
              L +RWPLG+I  GV  F+ GQVLLY FS  IC+ V HY+DGLFF T CNLLAVMMVYK
Sbjct  212  RVLGERWPLGYILLGVFFFVIGQVLLYVFSVHICEGVSHYIDGLFFGTLCNLLAVMMVYK  271



Lambda      K        H        a         alpha
   0.333    0.147    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00002040

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432442 pfam12271, Chs3p, Chitin synthase III catalytic subuni...  123     5e-37


>CDD:432442 pfam12271, Chs3p, Chitin synthase III catalytic subunit.  This 
family of proteins is found in eukaryotes. Proteins in this 
family are typically between 288 and 332 amino acids in length. 
This family is the catalytic domain of chitin synthase 
III. Chitin is a major component of fungal cell walls and this 
enzyme is responsible for its formation.
Length=283

 Score = 123 bits (310),  Expect = 5e-37, Method: Composition-based stats.
 Identities = 54/79 (68%), Positives = 61/79 (77%), Gaps = 1/79 (1%)

Query  2   GFGQFDSICQKAALPLCSLVGPS-SPISGSTGIIPNCYARNIELANTIIFEGAASFVHII  60
           GFG FDSIC+K ALPLC+LVG S S   G  GI P CYAR IELANTIIF+    F+HII
Sbjct  1   GFGDFDSICRKTALPLCNLVGSSHSQTGGWGGIEPRCYARGIELANTIIFQLGNIFIHII  60

Query  61  ALGMTVIMILHVRSKFTAV  79
           AL MT+I+I HVRSK+TAV
Sbjct  61  ALIMTLILIYHVRSKYTAV  79



Lambda      K        H        a         alpha
   0.327    0.140    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00002041

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00002042

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00002044

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00002043

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00007481

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00007482

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00002045

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.543    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00002047

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00002048

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00002049

Length=802
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   59.7    3e-12


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 59.7 bits (145),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (39%), Gaps = 23/67 (34%)

Query  730  FDCAICMQEIEVPVLAARGSAGGSSVTEGATSILSRRTYMVTPCRHIFHSTCLESWMRLR  789
             +C IC++E E                            +V PC H FH  CL+ W+R  
Sbjct  1    DECPICLEEFEEG-----------------------DKVVVLPCGHHFHRECLDKWLRSS  37

Query  790  LQCPICR  796
              CP+CR
Sbjct  38   NTCPLCR  44



Lambda      K        H        a         alpha
   0.322    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1030247616


Query= TCONS_00002050

Length=802
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   59.7    3e-12


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 59.7 bits (145),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (39%), Gaps = 23/67 (34%)

Query  730  FDCAICMQEIEVPVLAARGSAGGSSVTEGATSILSRRTYMVTPCRHIFHSTCLESWMRLR  789
             +C IC++E E                            +V PC H FH  CL+ W+R  
Sbjct  1    DECPICLEEFEEG-----------------------DKVVVLPCGHHFHRECLDKWLRSS  37

Query  790  LQCPICR  796
              CP+CR
Sbjct  38   NTCPLCR  44



Lambda      K        H        a         alpha
   0.322    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1030247616


Query= TCONS_00002051

Length=802
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   59.7    3e-12


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 59.7 bits (145),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (39%), Gaps = 23/67 (34%)

Query  730  FDCAICMQEIEVPVLAARGSAGGSSVTEGATSILSRRTYMVTPCRHIFHSTCLESWMRLR  789
             +C IC++E E                            +V PC H FH  CL+ W+R  
Sbjct  1    DECPICLEEFEEG-----------------------DKVVVLPCGHHFHRECLDKWLRSS  37

Query  790  LQCPICR  796
              CP+CR
Sbjct  38   NTCPLCR  44



Lambda      K        H        a         alpha
   0.322    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1030247616


Query= TCONS_00002052

Length=463


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00002053

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00002054

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460281 pfam01652, IF4E, Eukaryotic initiation factor 4E           86.8    1e-22


>CDD:460281 pfam01652, IF4E, Eukaryotic initiation factor 4E.  
Length=158

 Score = 86.8 bits (216),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 5/100 (5%)

Query  49   PLQYHWTVWYD-RYSESTDYDNRLYVLHEDVADIATFYRVYNN-YPWDKIRLRDSVHIFR  106
            PLQ  WT+WYD +  +S  Y++ L  +      +  F+ +YN+  P  ++      H+F+
Sbjct  1    PLQNTWTLWYDTKPDKSKSYEDNLKKI-GTFDTVEDFWSLYNHIKPPSELPPGSDYHLFK  59

Query  107  KGVRPVWEDPENLRGGCWKFRVPKS-KAQEFFHEIAILCM  145
            +G++P+WEDP N  GG W  R+ K       + ++ +L +
Sbjct  60   EGIKPMWEDPANKNGGKWIIRLKKKGLLDRLWEDL-LLAL  98



Lambda      K        H        a         alpha
   0.321    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00002055

Length=789
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461586 pfam05205, COMPASS-Shg1, COMPASS (Complex proteins ass...  123     4e-34


>CDD:461586 pfam05205, COMPASS-Shg1, COMPASS (Complex proteins associated 
with Set1p) component shg1.  The Shg1 subunit is one of the 
eight subunits of the COMPASS complex, complex associated with 
SET1, conserved in yeasts and in other eukaryotes up to 
humans. It is associated with the region of the Set1 protein 
that is N-terminal to the C-terminus, ie Set1-560-900. The 
function of Shg1 seems to be to slightly inhibit histone 3 lysine 
4 (H3K4) di- and tri-methylation, and it is a pioneer 
protein. The COMPASS complex functions to methylate the fourth 
lysine of Histone 3 and for silencing of genes close to the 
telomeres of chromosomes.
Length=100

 Score = 123 bits (312),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 56/101 (55%), Positives = 69/101 (68%), Gaps = 1/101 (1%)

Query  48   DLLHAFKKKGGFDNVRKKIWAEFHDGEARAEFTKLLIELAESEIEREPELLSRERGKAAT  107
             L+H FKKKGGFD +RK I A+F   +A     + L E+ ESE+ER+P LLS+ RGKAA 
Sbjct  1    SLVHEFKKKGGFDKLRKDILADFDTSDAYQNLLQRLEEIVESEVERDPSLLSKNRGKAAA  60

Query  108  LIEGAVDRSDVYKKAEKLIDALASNHLQFILDSVREIRRQQ  148
            LIEGA+DRSDVYKKAE  +D L    L  I   +REIRR +
Sbjct  61   LIEGAIDRSDVYKKAEAGVDRLIDQVLD-IEPKIREIRRPE  100



Lambda      K        H        a         alpha
   0.314    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1011330640


Query= TCONS_00007483

Length=725
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461768 pfam05879, RHD3, Root hair defective 3 GTP-binding pro...  448     3e-155
CDD:466577 pfam20428, Sey1_3HB, Sey1 three-helix bundle domain. T...  423     6e-143


>CDD:461768 pfam05879, RHD3, Root hair defective 3 GTP-binding protein (RHD3). 
 This family consists of several eukaryotic root hair 
defective 3 like GTP-binding proteins. It has been speculated 
that the RHD3 protein is a member of a novel class of GTP-binding 
proteins that is widespread in eukaryotes and required 
for regulated cell enlargement. The family also contains 
the homologous yeast synthetic enhancement of YOP1 (SEY1) protein 
which is involved in membrane trafficking.
Length=243

 Score = 448 bits (1153),  Expect = 3e-155, Method: Composition-based stats.
 Identities = 179/264 (68%), Positives = 200/264 (76%), Gaps = 21/264 (8%)

Query  58   FGSQSTGKSTLLNHLFGTHFSVMSDSERRQTTKGIWMSKNKREGEATVDPTLRMADNILV  117
            FGSQSTGKSTLLNHLFGT+FSVM  S R+QTTKGIW++K K  G         M  NILV
Sbjct  1    FGSQSTGKSTLLNHLFGTNFSVMDASGRQQTTKGIWLAKCKGIG--------NMEPNILV  52

Query  118  MDVEGTDGRERGEDQDFERKSALFALATSEVLIVNIWEHQVGLYQGANMGLLKTVFEVNL  177
            MDVEGTDGRERGEDQDFERKSALFALATSEVLIVN+WEHQVGLYQGANMGLLKTVFEVNL
Sbjct  53   MDVEGTDGRERGEDQDFERKSALFALATSEVLIVNMWEHQVGLYQGANMGLLKTVFEVNL  112

Query  178  QLFLKDKNTTHRSLLFFVIRDFVGTTPLKNLQKTLMEDMARLWESISKPPGLESSSVHDY  237
            QLF KDK+  H++LL FVIRD VG TPL+NL+ TL ED+ ++W+S+SKP GLE+S ++D+
Sbjct  113  QLFGKDKDNPHKTLLLFVIRDHVGVTPLENLEDTLREDLQKIWDSLSKPAGLENSPLNDF  172

Query  238  FDFQFYGLPHKSYQPEQFVAETKKLSLRFREGQRDPSMDARRGEFSEGGVFLPEYHRRIP  297
            FD +F  LPHK  Q +QF  E KKL  RF                   G F PEYH RIP
Sbjct  173  FDVEFVALPHKELQEDQFKEEVKKLRQRFVHSI-------------SPGGFAPEYHGRIP  219

Query  298  ADGFSRYAEGIWDQIVNNKDLDLP  321
            ADGFS YAE IWDQI NNKDLDLP
Sbjct  220  ADGFSFYAEQIWDQIENNKDLDLP  243


>CDD:466577 pfam20428, Sey1_3HB, Sey1 three-helix bundle domain.  This is 
the three-helix bundle (3HB) domain found at the C-terminal 
of Sey1 from yeast and RHD3 from Arabidopsis, GTP-binding proteins 
involved in homotypic membrane fusion of the endoplasmic 
reticulum. This is a stalk-like domain composed of four 
3HBs that interacts with its own GTPase domain and that of 
a neighbouring molecule, to undergo major conformational changes 
during the GTP cycle to drive membrane fusion.
Length=419

 Score = 423 bits (1089),  Expect = 6e-143, Method: Composition-based stats.
 Identities = 170/364 (47%), Positives = 217/364 (60%), Gaps = 31/364 (9%)

Query  367  GGLGAAMRSSRAKAVKNFETEASRYHKGVYQRKRAELESKVDTRLKALLQGQLNAAHKSG  426
            GGLGA + S R K +  ++TEASRY+KGVYQ KR ELE K+D+ LK   Q QL A HK  
Sbjct  1    GGLGAKLASIREKCLSEYDTEASRYNKGVYQEKRQELEEKLDSHLKPTFQAQLGALHKGL  60

Query  427  INEFSEAVSSSVKSGQKQGAGYDFAEIVNEEVKKAIAKFEDVARSTVVEGTTWSDYKQEL  486
            +  F EAVSS++K+G+       FAE V +   K + KF++   S  +EG  W D  +  
Sbjct  61   LESFKEAVSSALKAGE------GFAESVKDLKTKCVEKFDEECESASIEGALW-DTSKIR  113

Query  487  ALYEKELADVSGRLRREEMRRLANRVERWVQSRLGESVGLEFNALGSGRAGGGAPETGEK  546
               EK++   S RLR+EE++ L NR E+ + S L E V L  N L               
Sbjct  114  LKLEKDIDAHSARLRKEELKELTNRYEKKLSSALSEPVELLLNKL---------------  158

Query  547  PLEKAFWDRVWNVFVETVLDAERRFTDRASSFDASLEEVDVGLWRLRRKSWGVLRAKIDE  606
               K  WD V  +F   V DA  RF DR   FD S EE D  L  L+RKSWGVLR KI E
Sbjct  159  --NKETWDTVLKLFKREVEDAVSRFKDRVDFFDLSEEENDKMLKNLKRKSWGVLRTKIHE  216

Query  607  EMTEGNLLLKLRENFEDKFRYDDAGVPRIWRPTDDIEGIYTRARESTLTLIPLLSRFRLA  666
            E +E NLL++LR+ FEDKFRYD  G+PR+W   +DIEGIY  ARE  L L+P+LSR RL+
Sbjct  217  EASEENLLMRLRDRFEDKFRYDSDGMPRLWTGKEDIEGIYKVAREHALKLLPVLSRIRLS  276

Query  667  ETS--APPPLDRWIGHTPSSATPADEEDLPPIGGVDEEEGKSLDEE---MMILSEAKRQE  721
            + S   PP L R +G T SSATP+  EDLPPIGGVDE    +L+E      IL+E +++ 
Sbjct  277  DGSDNIPPTLTRALGDTTSSATPS--EDLPPIGGVDELASSTLEEVPPSATILTEVQKKS  334

Query  722  LTVR  725
            L V+
Sbjct  335  LWVQ  338



Lambda      K        H        a         alpha
   0.316    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 918200912


Query= TCONS_00002056

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:405951 pfam15370, DUF4598, Domain of unknown function (DUF459...  132     6e-40


>CDD:405951 pfam15370, DUF4598, Domain of unknown function (DUF4598).  This 
family of proteins is found in eukaryotes. Proteins in this 
family are typically between 159 and 251 amino acids in length.
Length=111

 Score = 132 bits (333),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 66/113 (58%), Positives = 84/113 (74%), Gaps = 5/113 (4%)

Query  139  LLSRLSAFLPKLKSANEDLQREIAAGRGKDLQLDEVDQEEGQYIEM---VGVLEEKRADG  195
            LLSRLSAFLP+LK+ANEDL+REIAAGRG DL +D+VD +E QYIEM   +GVLEEKR D 
Sbjct  1    LLSRLSAFLPQLKAANEDLEREIAAGRGADLDIDDVDDDEEQYIEMNLGLGVLEEKRDDS  60

Query  196  STSTDDEIGDGQEFANDEDAAESDTKLQRDSDILDRLMGKKKSSDQKPTIQEL  248
            S S  D   D  +  +DED   +D++  +DS++L +LMGKK  S +KP I+EL
Sbjct  61   SESDSDSSSDSSDSESDEDEQSADSE--KDSNVLGKLMGKKSRSKKKPKIEEL  111



Lambda      K        H        a         alpha
   0.302    0.123    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00002057

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426082 pfam01150, GDA1_CD39, GDA1/CD39 (nucleoside phosphatas...  341     3e-115


>CDD:426082 pfam01150, GDA1_CD39, GDA1/CD39 (nucleoside phosphatase) family. 
 
Length=416

 Score = 341 bits (876),  Expect = 3e-115, Method: Composition-based stats.
 Identities = 141/428 (33%), Positives = 208/428 (49%), Gaps = 51/428 (12%)

Query  1    MIDAGSQGSRIHVYRF-----NNCGPSPELEDEVFFQTEPKKGGSGLSSYKEDAEGAAKS  55
            +IDAGS G+R+HVY++           P +E+  F + EP     GLSS+    + AA  
Sbjct  13   IIDAGSSGTRLHVYKWPDEKEGLTPIVPLIEE--FKKLEP-----GLSSFATKPDAAANY  65

Query  56   LDPLMEVAMKNVPDEYKSCSPIAVKATAGLRMLGPELSQKILDAVRNRLETVYPFPVVSK  115
            L PL+E A +++P+E +S +P+ + ATAG+R+L  E  + IL A+RN L+++  FPV   
Sbjct  66   LTPLLEFAEEHIPEEKRSETPVFLGATAGMRLLPDESKESILKALRNGLKSLTSFPV---  122

Query  116  EKGGVEIMDGSDEGVYAWITTNYLLGKIGGPDETPTAAVFDLGGGSTQIVFQPTFPKSKS  175
            +  G+ I+DG +EG Y WI  NYLLG  G P +  T    DLGG STQI F+P+   + +
Sbjct  123  DDQGIRIIDGQEEGAYGWIAINYLLGNFGKPKQ-STFGAIDLGGASTQIAFEPSNESAIN  181

Query  176  GGMPERLSEGDHKYDLQFGGRHFELYQHSHLGYGLMAARKAIHTSIIENMLASSPKDLSW  235
              +     + +     +   + + LY HS LGYG   A +     +I+N+      D   
Sbjct  182  STV----EDIELGLQFRLYDKDYTLYVHSFLGYGANEALRKYLAKLIQNLSNGILND---  234

Query  236  LKQPIPNPCIGPEMEKNVTLEFPEGHKLAPEVQVTMVGPKVGSTAAQCRGLAEKTLNKEA  295
                   PC+ P   K V +   EG + A            G+   QCR    + LNK A
Sbjct  235  -------PCMPPGYNKTVEVSTLEGKQFAI--------QGTGN-WEQCRQSILELLNKNA  278

Query  296  ACTLAPCSFNGVHQPS---LEKTF-AREDVYIFSYFYDRTKPLGMPDSFTLDELHQLTST  351
             C   PC+FNGVH PS   L+K+F A    Y    F+         + FT      +   
Sbjct  279  HCPYEPCAFNGVHAPSIGSLQKSFGASSYFYTVMDFFGLGGEYSSQEKFT-----DIARK  333

Query  352  VCGGEDSWG-IFAGIEGALKELRDRPEWCLDLNFMMSLLHTGYEMPLSREVKIAKKIKNR  410
             C    +W  I AG    L +      +C    +++SLLH G+  P + E++   KI  +
Sbjct  334  FC--SKNWNDIKAGFPKVLDKNISEETYCFKGAYILSLLHDGFNFPKTEEIQSVGKIAGK  391

Query  411  ELGWCLGA  418
            E GW LGA
Sbjct  392  EAGWTLGA  399



Lambda      K        H        a         alpha
   0.316    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0725    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00007484

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-termina...  107     3e-30
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  72.7    3e-17


>CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain. 
 Elongation factor Tu consists of three structural domains, 
this is the third domain. This domain adopts a beta barrel 
structure. This the third domain is involved in binding to 
both charged tRNA and binding to EF-Ts pfam00889.
Length=105

 Score = 107 bits (270),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 48/119 (40%), Positives = 64/119 (54%), Gaps = 14/119 (12%)

Query  156  STKAHDKFLVSMYVLTEAEGGRRTGFGANYRPQVFIRTAGKFPHTVSRSSERLAIYANDS  215
              K H KF   +Y+L + EGGR T F   YRPQ + RTA      V+     L ++  D 
Sbjct  1    PIKPHTKFEAQVYILNKEEGGRHTPFFNGYRPQFYFRTA-----DVTGKFVEL-LHKLDP  54

Query  216  SDEAADLSFPDGDQSRRVMPGDNVEMILKTHHPVAAEAGQRFNIREGGRTVATGLITRV  274
               + +  F        VMPGDNV + ++   P+A E GQRF IREGGRTVA G++T +
Sbjct  55   GGVSENPEF--------VMPGDNVIVTVELIKPIALEKGQRFAIREGGRTVAAGVVTEI  105


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 72.7 bits (179),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 43/73 (59%), Gaps = 2/73 (3%)

Query  82   GTVASGRVERGILKKDSEVEIVGGS--FEPKKTKVTDIETFKKSCDESRAGDNSGLLLRG  139
            GTVA+GRVE G LKK  +V I+      +   T+VT +  F     E+ AGDN+GL+L G
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAG  60

Query  140  IRREDVKRGMVIA  152
            +  ED++ G  + 
Sbjct  61   VGLEDIRVGDTLT  73



Lambda      K        H        a         alpha
   0.317    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00002059

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  129     2e-37
CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-termina...  113     3e-32
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  70.4    2e-16


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 129 bits (328),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 53/113 (47%), Positives = 75/113 (66%), Gaps = 11/113 (10%)

Query  1    MITGAANMDGAIVVVAASDGQMPQTREHLLLARQVGVQKIVVFVNKIDAIDDPEMLELVE  60
            +I G A  DGAI+VV A +G MPQTREHL LARQ+GV  I+VF+NK+D +D  E+ E+VE
Sbjct  86   VIRGLAQADGAILVVDAVEGVMPQTREHLRLARQLGV-PIIVFINKMDRVDGAELEEVVE  144

Query  61   LEMRELLNSYGFEGEETPIIFGSALCALEGRRDDIGKDRIEQLMNAVDTWIPT  113
               RELL  YG +GE  P++ GSAL            + ++ L++A+D ++P+
Sbjct  145  EVSRELLEKYGEDGEFVPVVPGSALKG----------EGVQTLLDALDEYLPS  187


>CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain. 
 Elongation factor Tu consists of three structural domains, 
this is the third domain. This domain adopts a beta barrel 
structure. This the third domain is involved in binding to 
both charged tRNA and binding to EF-Ts pfam00889.
Length=105

 Score = 113 bits (286),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 47/105 (45%), Positives = 58/105 (55%), Gaps = 8/105 (8%)

Query  210  STKAHDKFLVSMYVLTEAEGGRRTGFGANYRPQVFIRTADEAA------DLSFPDGDQSR  263
              K H KF   +Y+L + EGGR T F   YRPQ + RTAD             P G    
Sbjct  1    PIKPHTKFEAQVYILNKEEGGRHTPFFNGYRPQFYFRTADVTGKFVELLHKLDPGGVSEN  60

Query  264  R--VMPGDNVEMILKTHHPVAAEAGQRFNIREGGRTVATGLITRV  306
               VMPGDNV + ++   P+A E GQRF IREGGRTVA G++T +
Sbjct  61   PEFVMPGDNVIVTVELIKPIALEKGQRFAIREGGRTVAAGVVTEI  105


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 70.4 bits (173),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 43/73 (59%), Gaps = 2/73 (3%)

Query  136  GTVASGRVERGILKKDSEVEIVGGS--FEPKKTKVTDIETFKKSCDESRAGDNSGLLLRG  193
            GTVA+GRVE G LKK  +V I+      +   T+VT +  F     E+ AGDN+GL+L G
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAG  60

Query  194  IRREDVKRGMVIA  206
            +  ED++ G  + 
Sbjct  61   VGLEDIRVGDTLT  73



Lambda      K        H        a         alpha
   0.318    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00007485

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  251     5e-83
CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-termina...  114     1e-31
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  73.5    5e-17


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 251 bits (644),  Expect = 5e-83, Method: Composition-based stats.
 Identities = 91/198 (46%), Positives = 124/198 (63%), Gaps = 14/198 (7%)

Query  50   KPHVNIGTIGHVDHGKTTLTAAITKHQ---SEKGLANFLEYGAIDKAPEERKRGITISTA  106
            K H NIG IGHVDHGKTTLT  +  +    S++G         +D  PEER+RGITI +A
Sbjct  1    KRHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSA  60

Query  107  HIEFSTDSRHYAHVDCPGHADYIKNMITGAANMDGAIVVVAASDGQMPQTREHLLLARQV  166
             + F T       +D PGH D++K +I G A  DGAI+VV A +G MPQTREHL LARQ+
Sbjct  61   AVSFETKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVEGVMPQTREHLRLARQL  120

Query  167  GVQKIVVFVNKIDAIDDPEMLELVELEMRELLNSYGFEGEETPIIFGSALCALEGRRDDI  226
            GV  I+VF+NK+D +D  E+ E+VE   RELL  YG +GE  P++ GSAL          
Sbjct  121  GV-PIIVFINKMDRVDGAELEEVVEEVSRELLEKYGEDGEFVPVVPGSALKG--------  171

Query  227  GKDRIEQLMNAVDTWIPT  244
              + ++ L++A+D ++P+
Sbjct  172  --EGVQTLLDALDEYLPS  187


>CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain. 
 Elongation factor Tu consists of three structural domains, 
this is the third domain. This domain adopts a beta barrel 
structure. This the third domain is involved in binding to 
both charged tRNA and binding to EF-Ts pfam00889.
Length=105

 Score = 114 bits (288),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 47/105 (45%), Positives = 58/105 (55%), Gaps = 8/105 (8%)

Query  341  STKAHDKFLVSMYVLTEAEGGRRTGFGANYRPQVFIRTADEAA------DLSFPDGDQSR  394
              K H KF   +Y+L + EGGR T F   YRPQ + RTAD             P G    
Sbjct  1    PIKPHTKFEAQVYILNKEEGGRHTPFFNGYRPQFYFRTADVTGKFVELLHKLDPGGVSEN  60

Query  395  R--VMPGDNVEMILKTHHPVAAEAGQRFNIREGGRTVATGLITRV  437
               VMPGDNV + ++   P+A E GQRF IREGGRTVA G++T +
Sbjct  61   PEFVMPGDNVIVTVELIKPIALEKGQRFAIREGGRTVAAGVVTEI  105


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 73.5 bits (181),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 43/73 (59%), Gaps = 2/73 (3%)

Query  267  GTVASGRVERGILKKDSEVEIVGGS--FEPKKTKVTDIETFKKSCDESRAGDNSGLLLRG  324
            GTVA+GRVE G LKK  +V I+      +   T+VT +  F     E+ AGDN+GL+L G
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAG  60

Query  325  IRREDVKRGMVIA  337
            +  ED++ G  + 
Sbjct  61   VGLEDIRVGDTLT  73



Lambda      K        H        a         alpha
   0.318    0.135    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00007486

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  129     2e-37
CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-termina...  113     3e-32
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  70.4    2e-16


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 129 bits (328),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 53/113 (47%), Positives = 75/113 (66%), Gaps = 11/113 (10%)

Query  1    MITGAANMDGAIVVVAASDGQMPQTREHLLLARQVGVQKIVVFVNKIDAIDDPEMLELVE  60
            +I G A  DGAI+VV A +G MPQTREHL LARQ+GV  I+VF+NK+D +D  E+ E+VE
Sbjct  86   VIRGLAQADGAILVVDAVEGVMPQTREHLRLARQLGV-PIIVFINKMDRVDGAELEEVVE  144

Query  61   LEMRELLNSYGFEGEETPIIFGSALCALEGRRDDIGKDRIEQLMNAVDTWIPT  113
               RELL  YG +GE  P++ GSAL            + ++ L++A+D ++P+
Sbjct  145  EVSRELLEKYGEDGEFVPVVPGSALKG----------EGVQTLLDALDEYLPS  187


>CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain. 
 Elongation factor Tu consists of three structural domains, 
this is the third domain. This domain adopts a beta barrel 
structure. This the third domain is involved in binding to 
both charged tRNA and binding to EF-Ts pfam00889.
Length=105

 Score = 113 bits (286),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 47/105 (45%), Positives = 58/105 (55%), Gaps = 8/105 (8%)

Query  210  STKAHDKFLVSMYVLTEAEGGRRTGFGANYRPQVFIRTADEAA------DLSFPDGDQSR  263
              K H KF   +Y+L + EGGR T F   YRPQ + RTAD             P G    
Sbjct  1    PIKPHTKFEAQVYILNKEEGGRHTPFFNGYRPQFYFRTADVTGKFVELLHKLDPGGVSEN  60

Query  264  R--VMPGDNVEMILKTHHPVAAEAGQRFNIREGGRTVATGLITRV  306
               VMPGDNV + ++   P+A E GQRF IREGGRTVA G++T +
Sbjct  61   PEFVMPGDNVIVTVELIKPIALEKGQRFAIREGGRTVAAGVVTEI  105


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 70.4 bits (173),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 43/73 (59%), Gaps = 2/73 (3%)

Query  136  GTVASGRVERGILKKDSEVEIVGGS--FEPKKTKVTDIETFKKSCDESRAGDNSGLLLRG  193
            GTVA+GRVE G LKK  +V I+      +   T+VT +  F     E+ AGDN+GL+L G
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAG  60

Query  194  IRREDVKRGMVIA  206
            +  ED++ G  + 
Sbjct  61   VGLEDIRVGDTLT  73



Lambda      K        H        a         alpha
   0.318    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00002060

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-termina...  114     4e-33
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  71.1    6e-17


>CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain. 
 Elongation factor Tu consists of three structural domains, 
this is the third domain. This domain adopts a beta barrel 
structure. This the third domain is involved in binding to 
both charged tRNA and binding to EF-Ts pfam00889.
Length=105

 Score = 114 bits (288),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 47/105 (45%), Positives = 58/105 (55%), Gaps = 8/105 (8%)

Query  156  STKAHDKFLVSMYVLTEAEGGRRTGFGANYRPQVFIRTADEAA------DLSFPDGDQSR  209
              K H KF   +Y+L + EGGR T F   YRPQ + RTAD             P G    
Sbjct  1    PIKPHTKFEAQVYILNKEEGGRHTPFFNGYRPQFYFRTADVTGKFVELLHKLDPGGVSEN  60

Query  210  R--VMPGDNVEMILKTHHPVAAEAGQRFNIREGGRTVATGLITRV  252
               VMPGDNV + ++   P+A E GQRF IREGGRTVA G++T +
Sbjct  61   PEFVMPGDNVIVTVELIKPIALEKGQRFAIREGGRTVAAGVVTEI  105


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 71.1 bits (175),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 43/73 (59%), Gaps = 2/73 (3%)

Query  82   GTVASGRVERGILKKDSEVEIVGGS--FEPKKTKVTDIETFKKSCDESRAGDNSGLLLRG  139
            GTVA+GRVE G LKK  +V I+      +   T+VT +  F     E+ AGDN+GL+L G
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAG  60

Query  140  IRREDVKRGMVIA  152
            +  ED++ G  + 
Sbjct  61   VGLEDIRVGDTLT  73



Lambda      K        H        a         alpha
   0.318    0.137    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 277421980


Query= TCONS_00002061

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  251     4e-83
CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-termina...  111     3e-30
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  73.5    6e-17


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 251 bits (644),  Expect = 4e-83, Method: Composition-based stats.
 Identities = 91/198 (46%), Positives = 124/198 (63%), Gaps = 14/198 (7%)

Query  50   KPHVNIGTIGHVDHGKTTLTAAITKHQ---SEKGLANFLEYGAIDKAPEERKRGITISTA  106
            K H NIG IGHVDHGKTTLT  +  +    S++G         +D  PEER+RGITI +A
Sbjct  1    KRHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSA  60

Query  107  HIEFSTDSRHYAHVDCPGHADYIKNMITGAANMDGAIVVVAASDGQMPQTREHLLLARQV  166
             + F T       +D PGH D++K +I G A  DGAI+VV A +G MPQTREHL LARQ+
Sbjct  61   AVSFETKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVEGVMPQTREHLRLARQL  120

Query  167  GVQKIVVFVNKIDAIDDPEMLELVELEMRELLNSYGFEGEETPIIFGSALCALEGRRDDI  226
            GV  I+VF+NK+D +D  E+ E+VE   RELL  YG +GE  P++ GSAL          
Sbjct  121  GV-PIIVFINKMDRVDGAELEEVVEEVSRELLEKYGEDGEFVPVVPGSALKG--------  171

Query  227  GKDRIEQLMNAVDTWIPT  244
              + ++ L++A+D ++P+
Sbjct  172  --EGVQTLLDALDEYLPS  187


>CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain. 
 Elongation factor Tu consists of three structural domains, 
this is the third domain. This domain adopts a beta barrel 
structure. This the third domain is involved in binding to 
both charged tRNA and binding to EF-Ts pfam00889.
Length=105

 Score = 111 bits (279),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 49/105 (47%), Positives = 61/105 (58%), Gaps = 8/105 (8%)

Query  341  STKAHDKFLVSMYVLTEAEGGRRTGFGANYRPQVFIRTA---GKAADLSF---PDGDQSR  394
              K H KF   +Y+L + EGGR T F   YRPQ + RTA   GK  +L     P G    
Sbjct  1    PIKPHTKFEAQVYILNKEEGGRHTPFFNGYRPQFYFRTADVTGKFVELLHKLDPGGVSEN  60

Query  395  R--VMPGDNVEMILKTHHPVAAEAGQRFNIREGGRTVATGLITRV  437
               VMPGDNV + ++   P+A E GQRF IREGGRTVA G++T +
Sbjct  61   PEFVMPGDNVIVTVELIKPIALEKGQRFAIREGGRTVAAGVVTEI  105


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 73.5 bits (181),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 43/73 (59%), Gaps = 2/73 (3%)

Query  267  GTVASGRVERGILKKDSEVEIVGGS--FEPKKTKVTDIETFKKSCDESRAGDNSGLLLRG  324
            GTVA+GRVE G LKK  +V I+      +   T+VT +  F     E+ AGDN+GL+L G
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAG  60

Query  325  IRREDVKRGMVIA  337
            +  ED++ G  + 
Sbjct  61   VGLEDIRVGDTLT  73



Lambda      K        H        a         alpha
   0.318    0.135    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00002063

Length=153
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  159     4e-51


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 159 bits (405),  Expect = 4e-51, Method: Composition-based stats.
 Identities = 50/107 (47%), Positives = 64/107 (60%), Gaps = 3/107 (3%)

Query  50   KPHVNIGTIGHVDHGKTTLTAAITKHQ---SEKGLANFLEYGAIDKAPEERKRGITISTA  106
            K H NIG IGHVDHGKTTLT  +  +    S++G         +D  PEER+RGITI +A
Sbjct  1    KRHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSA  60

Query  107  HIEFSTDSRHYAHVDCPGHADYIKNMITGAANMDGAIVVVAASDGQM  153
             + F T       +D PGH D++K +I G A  DGAI+VV A +G M
Sbjct  61   AVSFETKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVEGVM  107



Lambda      K        H        a         alpha
   0.317    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00002064

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  252     5e-84
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  73.8    3e-17


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 252 bits (646),  Expect = 5e-84, Method: Composition-based stats.
 Identities = 91/198 (46%), Positives = 124/198 (63%), Gaps = 14/198 (7%)

Query  50   KPHVNIGTIGHVDHGKTTLTAAITKHQ---SEKGLANFLEYGAIDKAPEERKRGITISTA  106
            K H NIG IGHVDHGKTTLT  +  +    S++G         +D  PEER+RGITI +A
Sbjct  1    KRHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSA  60

Query  107  HIEFSTDSRHYAHVDCPGHADYIKNMITGAANMDGAIVVVAASDGQMPQTREHLLLARQV  166
             + F T       +D PGH D++K +I G A  DGAI+VV A +G MPQTREHL LARQ+
Sbjct  61   AVSFETKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVEGVMPQTREHLRLARQL  120

Query  167  GVQKIVVFVNKIDAIDDPEMLELVELEMRELLNSYGFEGEETPIIFGSALCALEGRRDDI  226
            GV  I+VF+NK+D +D  E+ E+VE   RELL  YG +GE  P++ GSAL          
Sbjct  121  GV-PIIVFINKMDRVDGAELEEVVEEVSRELLEKYGEDGEFVPVVPGSALKG--------  171

Query  227  GKDRIEQLMNAVDTWIPT  244
              + ++ L++A+D ++P+
Sbjct  172  --EGVQTLLDALDEYLPS  187


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 73.8 bits (182),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 43/73 (59%), Gaps = 2/73 (3%)

Query  267  GTVASGRVERGILKKDSEVEIVGGS--FEPKKTKVTDIETFKKSCDESRAGDNSGLLLRG  324
            GTVA+GRVE G LKK  +V I+      +   T+VT +  F     E+ AGDN+GL+L G
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAG  60

Query  325  IRREDVKRGMVIA  337
            +  ED++ G  + 
Sbjct  61   VGLEDIRVGDTLT  73



Lambda      K        H        a         alpha
   0.318    0.135    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00007487

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  250     9e-83
CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-termina...  92.7    1e-23
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  73.1    6e-17


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 250 bits (641),  Expect = 9e-83, Method: Composition-based stats.
 Identities = 91/198 (46%), Positives = 124/198 (63%), Gaps = 14/198 (7%)

Query  50   KPHVNIGTIGHVDHGKTTLTAAITKHQ---SEKGLANFLEYGAIDKAPEERKRGITISTA  106
            K H NIG IGHVDHGKTTLT  +  +    S++G         +D  PEER+RGITI +A
Sbjct  1    KRHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSA  60

Query  107  HIEFSTDSRHYAHVDCPGHADYIKNMITGAANMDGAIVVVAASDGQMPQTREHLLLARQV  166
             + F T       +D PGH D++K +I G A  DGAI+VV A +G MPQTREHL LARQ+
Sbjct  61   AVSFETKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVEGVMPQTREHLRLARQL  120

Query  167  GVQKIVVFVNKIDAIDDPEMLELVELEMRELLNSYGFEGEETPIIFGSALCALEGRRDDI  226
            GV  I+VF+NK+D +D  E+ E+VE   RELL  YG +GE  P++ GSAL          
Sbjct  121  GV-PIIVFINKMDRVDGAELEEVVEEVSRELLEKYGEDGEFVPVVPGSALKG--------  171

Query  227  GKDRIEQLMNAVDTWIPT  244
              + ++ L++A+D ++P+
Sbjct  172  --EGVQTLLDALDEYLPS  187


>CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain. 
 Elongation factor Tu consists of three structural domains, 
this is the third domain. This domain adopts a beta barrel 
structure. This the third domain is involved in binding to 
both charged tRNA and binding to EF-Ts pfam00889.
Length=105

 Score = 92.7 bits (231),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 43/105 (41%), Positives = 53/105 (50%), Gaps = 17/105 (16%)

Query  341  STKAHDKFLVSMYVLTEAEGGRRTVF---------IRTADEAA------DLSFPDGDQSR  385
              K H KF   +Y+L + EGGR T F          RTAD             P G    
Sbjct  1    PIKPHTKFEAQVYILNKEEGGRHTPFFNGYRPQFYFRTADVTGKFVELLHKLDPGGVSEN  60

Query  386  R--VMPGDNVEMILKTHHPVAAEAGQRFNIREGGRTVATGLITRV  428
               VMPGDNV + ++   P+A E GQRF IREGGRTVA G++T +
Sbjct  61   PEFVMPGDNVIVTVELIKPIALEKGQRFAIREGGRTVAAGVVTEI  105


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 73.1 bits (180),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 43/73 (59%), Gaps = 2/73 (3%)

Query  267  GTVASGRVERGILKKDSEVEIVGGS--FEPKKTKVTDIETFKKSCDESRAGDNSGLLLRG  324
            GTVA+GRVE G LKK  +V I+      +   T+VT +  F     E+ AGDN+GL+L G
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAG  60

Query  325  IRREDVKRGMVIA  337
            +  ED++ G  + 
Sbjct  61   VGLEDIRVGDTLT  73



Lambda      K        H        a         alpha
   0.317    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00002065

Length=652
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466577 pfam20428, Sey1_3HB, Sey1 three-helix bundle domain. T...  556     0.0  
CDD:461768 pfam05879, RHD3, Root hair defective 3 GTP-binding pro...  161     9e-46


>CDD:466577 pfam20428, Sey1_3HB, Sey1 three-helix bundle domain.  This is 
the three-helix bundle (3HB) domain found at the C-terminal 
of Sey1 from yeast and RHD3 from Arabidopsis, GTP-binding proteins 
involved in homotypic membrane fusion of the endoplasmic 
reticulum. This is a stalk-like domain composed of four 
3HBs that interacts with its own GTPase domain and that of 
a neighbouring molecule, to undergo major conformational changes 
during the GTP cycle to drive membrane fusion.
Length=419

 Score = 556 bits (1435),  Expect = 0.0, Method: Composition-based stats.
 Identities = 214/445 (48%), Positives = 271/445 (61%), Gaps = 31/445 (7%)

Query  155  GGLGAAMRSSRAKAVKNFETEASRYHKGVYQRKRAELESKVDTRLKALLQGQLNAAHKSG  214
            GGLGA + S R K +  ++TEASRY+KGVYQ KR ELE K+D+ LK   Q QL A HK  
Sbjct  1    GGLGAKLASIREKCLSEYDTEASRYNKGVYQEKRQELEEKLDSHLKPTFQAQLGALHKGL  60

Query  215  INEFSEAVSSSVKSGQKQGAGYDFAEIVNEEVKKAIAKFEDVARSTVVEGTTWSDYKQEL  274
            +  F EAVSS++K+G+       FAE V +   K + KF++   S  +EG  W D  +  
Sbjct  61   LESFKEAVSSALKAGE------GFAESVKDLKTKCVEKFDEECESASIEGALW-DTSKIR  113

Query  275  ALYEKELADVSGRLRREEMRRLANRVERWVQSRLGESVGLEFNALGSGRAGGGAPETGEK  334
               EK++   S RLR+EE++ L NR E+ + S L E V L  N L               
Sbjct  114  LKLEKDIDAHSARLRKEELKELTNRYEKKLSSALSEPVELLLNKL---------------  158

Query  335  PLEKAFWDRVWNVFVETVLDAERRFTDRASSFDASLEEVDVGLWRLRRKSWGVLRAKIDE  394
               K  WD V  +F   V DA  RF DR   FD S EE D  L  L+RKSWGVLR KI E
Sbjct  159  --NKETWDTVLKLFKREVEDAVSRFKDRVDFFDLSEEENDKMLKNLKRKSWGVLRTKIHE  216

Query  395  EMTEGNLLLKLRENFEDKFRYDDAGVPRIWRPTDDIEGIYTRARESTLTLIPLLSRFRLA  454
            E +E NLL++LR+ FEDKFRYD  G+PR+W   +DIEGIY  ARE  L L+P+LSR RL+
Sbjct  217  EASEENLLMRLRDRFEDKFRYDSDGMPRLWTGKEDIEGIYKVAREHALKLLPVLSRIRLS  276

Query  455  ETS--APPPLDRWIGHTPSSATPADEEDLPPIGGVDEEEGKSLDEE---MMILSEAKRQE  509
            + S   PP L R +G T SSATP+  EDLPPIGGVDE    +L+E      IL+E +++ 
Sbjct  277  DGSDNIPPTLTRALGDTTSSATPS--EDLPPIGGVDELASSTLEEVPPSATILTEVQKKS  334

Query  510  LTVRFKKAADGVYVEAKRSAIGGMTQVPLYFYGLLLALGWNEIIAVLRNPAYFFLLFICA  569
            L V+FKK AD    EAKRS I   TQ+P YFY LLL LGWNE +AVLRNP YFFLL +  
Sbjct  335  LWVQFKKEADYTVTEAKRSIINNNTQIPPYFYVLLLVLGWNEFMAVLRNPLYFFLLLLLG  394

Query  570  VGAYVTYQLNLWGPIIKMTEAASSQ  594
               YV Y L+L GP++ + + A+ +
Sbjct  395  KTLYVQYDLSLSGPVMNVLQRAAEE  419


>CDD:461768 pfam05879, RHD3, Root hair defective 3 GTP-binding protein (RHD3). 
 This family consists of several eukaryotic root hair 
defective 3 like GTP-binding proteins. It has been speculated 
that the RHD3 protein is a member of a novel class of GTP-binding 
proteins that is widespread in eukaryotes and required 
for regulated cell enlargement. The family also contains 
the homologous yeast synthetic enhancement of YOP1 (SEY1) protein 
which is involved in membrane trafficking.
Length=243

 Score = 161 bits (408),  Expect = 9e-46, Method: Composition-based stats.
 Identities = 58/109 (53%), Positives = 69/109 (63%), Gaps = 13/109 (12%)

Query  1    MEDMARLWESISKPPGLESSSVHDYFDFQFYGLPHKSYQPEQFVAETKKLSLRFREGQRD  60
             ED+ ++W+S+SKP GLE+S ++D+FD +F  LPHK  Q +QF  E KKL  RF      
Sbjct  148  REDLQKIWDSLSKPAGLENSPLNDFFDVEFVALPHKELQEDQFKEEVKKLRQRFVHSI--  205

Query  61   PSMDARRGEFSEGGVFLPEYHRRIPADGFSRYAEGIWDQIVNNKDLDLP  109
                         G F PEYH RIPADGFS YAE IWDQI NNKDLDLP
Sbjct  206  -----------SPGGFAPEYHGRIPADGFSFYAEQIWDQIENNKDLDLP  243



Lambda      K        H        a         alpha
   0.316    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00007488

Length=864
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466577 pfam20428, Sey1_3HB, Sey1 three-helix bundle domain. T...  560     0.0   
CDD:461768 pfam05879, RHD3, Root hair defective 3 GTP-binding pro...  450     1e-154


>CDD:466577 pfam20428, Sey1_3HB, Sey1 three-helix bundle domain.  This is 
the three-helix bundle (3HB) domain found at the C-terminal 
of Sey1 from yeast and RHD3 from Arabidopsis, GTP-binding proteins 
involved in homotypic membrane fusion of the endoplasmic 
reticulum. This is a stalk-like domain composed of four 
3HBs that interacts with its own GTPase domain and that of 
a neighbouring molecule, to undergo major conformational changes 
during the GTP cycle to drive membrane fusion.
Length=419

 Score = 560 bits (1445),  Expect = 0.0, Method: Composition-based stats.
 Identities = 214/445 (48%), Positives = 271/445 (61%), Gaps = 31/445 (7%)

Query  367  GGLGAAMRSSRAKAVKNFETEASRYHKGVYQRKRAELESKVDTRLKALLQGQLNAAHKSG  426
            GGLGA + S R K +  ++TEASRY+KGVYQ KR ELE K+D+ LK   Q QL A HK  
Sbjct  1    GGLGAKLASIREKCLSEYDTEASRYNKGVYQEKRQELEEKLDSHLKPTFQAQLGALHKGL  60

Query  427  INEFSEAVSSSVKSGQKQGAGYDFAEIVNEEVKKAIAKFEDVARSTVVEGTTWSDYKQEL  486
            +  F EAVSS++K+G+       FAE V +   K + KF++   S  +EG  W D  +  
Sbjct  61   LESFKEAVSSALKAGE------GFAESVKDLKTKCVEKFDEECESASIEGALW-DTSKIR  113

Query  487  ALYEKELADVSGRLRREEMRRLANRVERWVQSRLGESVGLEFNALGSGRAGGGAPETGEK  546
               EK++   S RLR+EE++ L NR E+ + S L E V L  N L               
Sbjct  114  LKLEKDIDAHSARLRKEELKELTNRYEKKLSSALSEPVELLLNKL---------------  158

Query  547  PLEKAFWDRVWNVFVETVLDAERRFTDRASSFDASLEEVDVGLWRLRRKSWGVLRAKIDE  606
               K  WD V  +F   V DA  RF DR   FD S EE D  L  L+RKSWGVLR KI E
Sbjct  159  --NKETWDTVLKLFKREVEDAVSRFKDRVDFFDLSEEENDKMLKNLKRKSWGVLRTKIHE  216

Query  607  EMTEGNLLLKLRENFEDKFRYDDAGVPRIWRPTDDIEGIYTRARESTLTLIPLLSRFRLA  666
            E +E NLL++LR+ FEDKFRYD  G+PR+W   +DIEGIY  ARE  L L+P+LSR RL+
Sbjct  217  EASEENLLMRLRDRFEDKFRYDSDGMPRLWTGKEDIEGIYKVAREHALKLLPVLSRIRLS  276

Query  667  ETS--APPPLDRWIGHTPSSATPADEEDLPPIGGVDEEEGKSLDEE---MMILSEAKRQE  721
            + S   PP L R +G T SSATP+  EDLPPIGGVDE    +L+E      IL+E +++ 
Sbjct  277  DGSDNIPPTLTRALGDTTSSATPS--EDLPPIGGVDELASSTLEEVPPSATILTEVQKKS  334

Query  722  LTVRFKKAADGVYVEAKRSAIGGMTQVPLYFYGLLLALGWNEIIAVLRNPAYFFLLFICA  781
            L V+FKK AD    EAKRS I   TQ+P YFY LLL LGWNE +AVLRNP YFFLL +  
Sbjct  335  LWVQFKKEADYTVTEAKRSIINNNTQIPPYFYVLLLVLGWNEFMAVLRNPLYFFLLLLLG  394

Query  782  VGAYVTYQLNLWGPIIKMTEAASSQ  806
               YV Y L+L GP++ + + A+ +
Sbjct  395  KTLYVQYDLSLSGPVMNVLQRAAEE  419


>CDD:461768 pfam05879, RHD3, Root hair defective 3 GTP-binding protein (RHD3). 
 This family consists of several eukaryotic root hair 
defective 3 like GTP-binding proteins. It has been speculated 
that the RHD3 protein is a member of a novel class of GTP-binding 
proteins that is widespread in eukaryotes and required 
for regulated cell enlargement. The family also contains 
the homologous yeast synthetic enhancement of YOP1 (SEY1) protein 
which is involved in membrane trafficking.
Length=243

 Score = 450 bits (1160),  Expect = 1e-154, Method: Composition-based stats.
 Identities = 179/264 (68%), Positives = 200/264 (76%), Gaps = 21/264 (8%)

Query  58   FGSQSTGKSTLLNHLFGTHFSVMSDSERRQTTKGIWMSKNKREGEATVDPTLRMADNILV  117
            FGSQSTGKSTLLNHLFGT+FSVM  S R+QTTKGIW++K K  G         M  NILV
Sbjct  1    FGSQSTGKSTLLNHLFGTNFSVMDASGRQQTTKGIWLAKCKGIG--------NMEPNILV  52

Query  118  MDVEGTDGRERGEDQDFERKSALFALATSEVLIVNIWEHQVGLYQGANMGLLKTVFEVNL  177
            MDVEGTDGRERGEDQDFERKSALFALATSEVLIVN+WEHQVGLYQGANMGLLKTVFEVNL
Sbjct  53   MDVEGTDGRERGEDQDFERKSALFALATSEVLIVNMWEHQVGLYQGANMGLLKTVFEVNL  112

Query  178  QLFLKDKNTTHRSLLFFVIRDFVGTTPLKNLQKTLMEDMARLWESISKPPGLESSSVHDY  237
            QLF KDK+  H++LL FVIRD VG TPL+NL+ TL ED+ ++W+S+SKP GLE+S ++D+
Sbjct  113  QLFGKDKDNPHKTLLLFVIRDHVGVTPLENLEDTLREDLQKIWDSLSKPAGLENSPLNDF  172

Query  238  FDFQFYGLPHKSYQPEQFVAETKKLSLRFREGQRDPSMDARRGEFSEGGVFLPEYHRRIP  297
            FD +F  LPHK  Q +QF  E KKL  RF                   G F PEYH RIP
Sbjct  173  FDVEFVALPHKELQEDQFKEEVKKLRQRFVHSI-------------SPGGFAPEYHGRIP  219

Query  298  ADGFSRYAEGIWDQIVNNKDLDLP  321
            ADGFS YAE IWDQI NNKDLDLP
Sbjct  220  ADGFSFYAEQIWDQIENNKDLDLP  243



Lambda      K        H        a         alpha
   0.316    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1103910266


Query= TCONS_00002067

Length=787
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466577 pfam20428, Sey1_3HB, Sey1 three-helix bundle domain. T...  496     7e-171
CDD:461768 pfam05879, RHD3, Root hair defective 3 GTP-binding pro...  449     5e-155


>CDD:466577 pfam20428, Sey1_3HB, Sey1 three-helix bundle domain.  This is 
the three-helix bundle (3HB) domain found at the C-terminal 
of Sey1 from yeast and RHD3 from Arabidopsis, GTP-binding proteins 
involved in homotypic membrane fusion of the endoplasmic 
reticulum. This is a stalk-like domain composed of four 
3HBs that interacts with its own GTPase domain and that of 
a neighbouring molecule, to undergo major conformational changes 
during the GTP cycle to drive membrane fusion.
Length=419

 Score = 496 bits (1280),  Expect = 7e-171, Method: Composition-based stats.
 Identities = 196/405 (48%), Positives = 245/405 (60%), Gaps = 31/405 (8%)

Query  367  GGLGAAMRSSRAKAVKNFETEASRYHKGVYQRKRAELESKVDTRLKALLQGQLNAAHKSG  426
            GGLGA + S R K +  ++TEASRY+KGVYQ KR ELE K+D+ LK   Q QL A HK  
Sbjct  1    GGLGAKLASIREKCLSEYDTEASRYNKGVYQEKRQELEEKLDSHLKPTFQAQLGALHKGL  60

Query  427  INEFSEAVSSSVKSGQKQGAGYDFAEIVNEEVKKAIAKFEDVARSTVVEGTTWSDYKQEL  486
            +  F EAVSS++K+G+       FAE V +   K + KF++   S  +EG  W D  +  
Sbjct  61   LESFKEAVSSALKAGE------GFAESVKDLKTKCVEKFDEECESASIEGALW-DTSKIR  113

Query  487  ALYEKELADVSGRLRREEMRRLANRVERWVQSRLGESVGLEFNALGSGRAGGGAPETGEK  546
               EK++   S RLR+EE++ L NR E+ + S L E V L  N L               
Sbjct  114  LKLEKDIDAHSARLRKEELKELTNRYEKKLSSALSEPVELLLNKL---------------  158

Query  547  PLEKAFWDRVWNVFVETVLDAERRFTDRASSFDASLEEVDVGLWRLRRKSWGVLRAKIDE  606
               K  WD V  +F   V DA  RF DR   FD S EE D  L  L+RKSWGVLR KI E
Sbjct  159  --NKETWDTVLKLFKREVEDAVSRFKDRVDFFDLSEEENDKMLKNLKRKSWGVLRTKIHE  216

Query  607  EMTEGNLLLKLRENFEDKFRYDDAGVPRIWRPTDDIEGIYTRARESTLTLIPLLSRFRLA  666
            E +E NLL++LR+ FEDKFRYD  G+PR+W   +DIEGIY  ARE  L L+P+LSR RL+
Sbjct  217  EASEENLLMRLRDRFEDKFRYDSDGMPRLWTGKEDIEGIYKVAREHALKLLPVLSRIRLS  276

Query  667  ETS--APPPLDRWIGHTPSSATPADEEDLPPIGGVDEEEGKSLDEE---MMILSEAKRQE  721
            + S   PP L R +G T SSATP+  EDLPPIGGVDE    +L+E      IL+E +++ 
Sbjct  277  DGSDNIPPTLTRALGDTTSSATPS--EDLPPIGGVDELASSTLEEVPPSATILTEVQKKS  334

Query  722  LTVRFKKAADGVYVEAKRSAIGGMTQVPLYFYGLLLALGWNEIIA  766
            L V+FKK AD    EAKRS I   TQ+P YFY LLL LGWNE +A
Sbjct  335  LWVQFKKEADYTVTEAKRSIINNNTQIPPYFYVLLLVLGWNEFMA  379


>CDD:461768 pfam05879, RHD3, Root hair defective 3 GTP-binding protein (RHD3). 
 This family consists of several eukaryotic root hair 
defective 3 like GTP-binding proteins. It has been speculated 
that the RHD3 protein is a member of a novel class of GTP-binding 
proteins that is widespread in eukaryotes and required 
for regulated cell enlargement. The family also contains 
the homologous yeast synthetic enhancement of YOP1 (SEY1) protein 
which is involved in membrane trafficking.
Length=243

 Score = 449 bits (1156),  Expect = 5e-155, Method: Composition-based stats.
 Identities = 179/264 (68%), Positives = 200/264 (76%), Gaps = 21/264 (8%)

Query  58   FGSQSTGKSTLLNHLFGTHFSVMSDSERRQTTKGIWMSKNKREGEATVDPTLRMADNILV  117
            FGSQSTGKSTLLNHLFGT+FSVM  S R+QTTKGIW++K K  G         M  NILV
Sbjct  1    FGSQSTGKSTLLNHLFGTNFSVMDASGRQQTTKGIWLAKCKGIG--------NMEPNILV  52

Query  118  MDVEGTDGRERGEDQDFERKSALFALATSEVLIVNIWEHQVGLYQGANMGLLKTVFEVNL  177
            MDVEGTDGRERGEDQDFERKSALFALATSEVLIVN+WEHQVGLYQGANMGLLKTVFEVNL
Sbjct  53   MDVEGTDGRERGEDQDFERKSALFALATSEVLIVNMWEHQVGLYQGANMGLLKTVFEVNL  112

Query  178  QLFLKDKNTTHRSLLFFVIRDFVGTTPLKNLQKTLMEDMARLWESISKPPGLESSSVHDY  237
            QLF KDK+  H++LL FVIRD VG TPL+NL+ TL ED+ ++W+S+SKP GLE+S ++D+
Sbjct  113  QLFGKDKDNPHKTLLLFVIRDHVGVTPLENLEDTLREDLQKIWDSLSKPAGLENSPLNDF  172

Query  238  FDFQFYGLPHKSYQPEQFVAETKKLSLRFREGQRDPSMDARRGEFSEGGVFLPEYHRRIP  297
            FD +F  LPHK  Q +QF  E KKL  RF                   G F PEYH RIP
Sbjct  173  FDVEFVALPHKELQEDQFKEEVKKLRQRFVHSI-------------SPGGFAPEYHGRIP  219

Query  298  ADGFSRYAEGIWDQIVNNKDLDLP  321
            ADGFS YAE IWDQI NNKDLDLP
Sbjct  220  ADGFSFYAEQIWDQIENNKDLDLP  243



Lambda      K        H        a         alpha
   0.316    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1008420336


Query= TCONS_00002068

Length=864
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466577 pfam20428, Sey1_3HB, Sey1 three-helix bundle domain. T...  561     0.0   
CDD:461768 pfam05879, RHD3, Root hair defective 3 GTP-binding pro...  450     1e-154


>CDD:466577 pfam20428, Sey1_3HB, Sey1 three-helix bundle domain.  This is 
the three-helix bundle (3HB) domain found at the C-terminal 
of Sey1 from yeast and RHD3 from Arabidopsis, GTP-binding proteins 
involved in homotypic membrane fusion of the endoplasmic 
reticulum. This is a stalk-like domain composed of four 
3HBs that interacts with its own GTPase domain and that of 
a neighbouring molecule, to undergo major conformational changes 
during the GTP cycle to drive membrane fusion.
Length=419

 Score = 561 bits (1447),  Expect = 0.0, Method: Composition-based stats.
 Identities = 214/445 (48%), Positives = 271/445 (61%), Gaps = 31/445 (7%)

Query  367  GGLGAAMRSSRAKAVKNFETEASRYHKGVYQRKRAELESKVDTRLKALLQGQLNAAHKSG  426
            GGLGA + S R K +  ++TEASRY+KGVYQ KR ELE K+D+ LK   Q QL A HK  
Sbjct  1    GGLGAKLASIREKCLSEYDTEASRYNKGVYQEKRQELEEKLDSHLKPTFQAQLGALHKGL  60

Query  427  INEFSEAVSSSVKSGQKQGAGYDFAEIVNEEVKKAIAKFEDVARSTVVEGTTWSDYKQEL  486
            +  F EAVSS++K+G+       FAE V +   K + KF++   S  +EG  W D  +  
Sbjct  61   LESFKEAVSSALKAGE------GFAESVKDLKTKCVEKFDEECESASIEGALW-DTSKIR  113

Query  487  ALYEKELADVSGRLRREEMRRLANRVERWVQSRLGESVGLEFNALGSGRAGGGAPETGEK  546
               EK++   S RLR+EE++ L NR E+ + S L E V L  N L               
Sbjct  114  LKLEKDIDAHSARLRKEELKELTNRYEKKLSSALSEPVELLLNKL---------------  158

Query  547  PLEKAFWDRVWNVFVETVLDAERRFTDRASSFDASLEEVDVGLWRLRRKSWGVLRAKIDE  606
               K  WD V  +F   V DA  RF DR   FD S EE D  L  L+RKSWGVLR KI E
Sbjct  159  --NKETWDTVLKLFKREVEDAVSRFKDRVDFFDLSEEENDKMLKNLKRKSWGVLRTKIHE  216

Query  607  EMTEGNLLLKLRENFEDKFRYDDAGVPRIWRPTDDIEGIYTRARESTLTLIPLLSRFRLA  666
            E +E NLL++LR+ FEDKFRYD  G+PR+W   +DIEGIY  ARE  L L+P+LSR RL+
Sbjct  217  EASEENLLMRLRDRFEDKFRYDSDGMPRLWTGKEDIEGIYKVAREHALKLLPVLSRIRLS  276

Query  667  ETS--APPPLDRWIGHTPSSATPADEEDLPPIGGVDEEEGKSLDEE---MMILSEAKRQE  721
            + S   PP L R +G T SSATP+  EDLPPIGGVDE    +L+E      IL+E +++ 
Sbjct  277  DGSDNIPPTLTRALGDTTSSATPS--EDLPPIGGVDELASSTLEEVPPSATILTEVQKKS  334

Query  722  LTVRFKKAADGVYVEAKRSAIGGMTQVPLYFYGLLLALGWNEIIAVLRNPAYFFLLFICA  781
            L V+FKK AD    EAKRS I   TQ+P YFY LLL LGWNE +AVLRNP YFFLL +  
Sbjct  335  LWVQFKKEADYTVTEAKRSIINNNTQIPPYFYVLLLVLGWNEFMAVLRNPLYFFLLLLLG  394

Query  782  VGAYVTYQLNLWGPIIKMTEAASSQ  806
               YV Y L+L GP++ + + A+ +
Sbjct  395  KTLYVQYDLSLSGPVMNVLQRAAEE  419


>CDD:461768 pfam05879, RHD3, Root hair defective 3 GTP-binding protein (RHD3). 
 This family consists of several eukaryotic root hair 
defective 3 like GTP-binding proteins. It has been speculated 
that the RHD3 protein is a member of a novel class of GTP-binding 
proteins that is widespread in eukaryotes and required 
for regulated cell enlargement. The family also contains 
the homologous yeast synthetic enhancement of YOP1 (SEY1) protein 
which is involved in membrane trafficking.
Length=243

 Score = 450 bits (1160),  Expect = 1e-154, Method: Composition-based stats.
 Identities = 179/264 (68%), Positives = 200/264 (76%), Gaps = 21/264 (8%)

Query  58   FGSQSTGKSTLLNHLFGTHFSVMSDSERRQTTKGIWMSKNKREGEATVDPTLRMADNILV  117
            FGSQSTGKSTLLNHLFGT+FSVM  S R+QTTKGIW++K K  G         M  NILV
Sbjct  1    FGSQSTGKSTLLNHLFGTNFSVMDASGRQQTTKGIWLAKCKGIG--------NMEPNILV  52

Query  118  MDVEGTDGRERGEDQDFERKSALFALATSEVLIVNIWEHQVGLYQGANMGLLKTVFEVNL  177
            MDVEGTDGRERGEDQDFERKSALFALATSEVLIVN+WEHQVGLYQGANMGLLKTVFEVNL
Sbjct  53   MDVEGTDGRERGEDQDFERKSALFALATSEVLIVNMWEHQVGLYQGANMGLLKTVFEVNL  112

Query  178  QLFLKDKNTTHRSLLFFVIRDFVGTTPLKNLQKTLMEDMARLWESISKPPGLESSSVHDY  237
            QLF KDK+  H++LL FVIRD VG TPL+NL+ TL ED+ ++W+S+SKP GLE+S ++D+
Sbjct  113  QLFGKDKDNPHKTLLLFVIRDHVGVTPLENLEDTLREDLQKIWDSLSKPAGLENSPLNDF  172

Query  238  FDFQFYGLPHKSYQPEQFVAETKKLSLRFREGQRDPSMDARRGEFSEGGVFLPEYHRRIP  297
            FD +F  LPHK  Q +QF  E KKL  RF                   G F PEYH RIP
Sbjct  173  FDVEFVALPHKELQEDQFKEEVKKLRQRFVHSI-------------SPGGFAPEYHGRIP  219

Query  298  ADGFSRYAEGIWDQIVNNKDLDLP  321
            ADGFS YAE IWDQI NNKDLDLP
Sbjct  220  ADGFSFYAEQIWDQIENNKDLDLP  243



Lambda      K        H        a         alpha
   0.316    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1103910266


Query= TCONS_00007489

Length=787
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466577 pfam20428, Sey1_3HB, Sey1 three-helix bundle domain. T...  496     7e-171
CDD:461768 pfam05879, RHD3, Root hair defective 3 GTP-binding pro...  449     5e-155


>CDD:466577 pfam20428, Sey1_3HB, Sey1 three-helix bundle domain.  This is 
the three-helix bundle (3HB) domain found at the C-terminal 
of Sey1 from yeast and RHD3 from Arabidopsis, GTP-binding proteins 
involved in homotypic membrane fusion of the endoplasmic 
reticulum. This is a stalk-like domain composed of four 
3HBs that interacts with its own GTPase domain and that of 
a neighbouring molecule, to undergo major conformational changes 
during the GTP cycle to drive membrane fusion.
Length=419

 Score = 496 bits (1280),  Expect = 7e-171, Method: Composition-based stats.
 Identities = 196/405 (48%), Positives = 245/405 (60%), Gaps = 31/405 (8%)

Query  367  GGLGAAMRSSRAKAVKNFETEASRYHKGVYQRKRAELESKVDTRLKALLQGQLNAAHKSG  426
            GGLGA + S R K +  ++TEASRY+KGVYQ KR ELE K+D+ LK   Q QL A HK  
Sbjct  1    GGLGAKLASIREKCLSEYDTEASRYNKGVYQEKRQELEEKLDSHLKPTFQAQLGALHKGL  60

Query  427  INEFSEAVSSSVKSGQKQGAGYDFAEIVNEEVKKAIAKFEDVARSTVVEGTTWSDYKQEL  486
            +  F EAVSS++K+G+       FAE V +   K + KF++   S  +EG  W D  +  
Sbjct  61   LESFKEAVSSALKAGE------GFAESVKDLKTKCVEKFDEECESASIEGALW-DTSKIR  113

Query  487  ALYEKELADVSGRLRREEMRRLANRVERWVQSRLGESVGLEFNALGSGRAGGGAPETGEK  546
               EK++   S RLR+EE++ L NR E+ + S L E V L  N L               
Sbjct  114  LKLEKDIDAHSARLRKEELKELTNRYEKKLSSALSEPVELLLNKL---------------  158

Query  547  PLEKAFWDRVWNVFVETVLDAERRFTDRASSFDASLEEVDVGLWRLRRKSWGVLRAKIDE  606
               K  WD V  +F   V DA  RF DR   FD S EE D  L  L+RKSWGVLR KI E
Sbjct  159  --NKETWDTVLKLFKREVEDAVSRFKDRVDFFDLSEEENDKMLKNLKRKSWGVLRTKIHE  216

Query  607  EMTEGNLLLKLRENFEDKFRYDDAGVPRIWRPTDDIEGIYTRARESTLTLIPLLSRFRLA  666
            E +E NLL++LR+ FEDKFRYD  G+PR+W   +DIEGIY  ARE  L L+P+LSR RL+
Sbjct  217  EASEENLLMRLRDRFEDKFRYDSDGMPRLWTGKEDIEGIYKVAREHALKLLPVLSRIRLS  276

Query  667  ETS--APPPLDRWIGHTPSSATPADEEDLPPIGGVDEEEGKSLDEE---MMILSEAKRQE  721
            + S   PP L R +G T SSATP+  EDLPPIGGVDE    +L+E      IL+E +++ 
Sbjct  277  DGSDNIPPTLTRALGDTTSSATPS--EDLPPIGGVDELASSTLEEVPPSATILTEVQKKS  334

Query  722  LTVRFKKAADGVYVEAKRSAIGGMTQVPLYFYGLLLALGWNEIIA  766
            L V+FKK AD    EAKRS I   TQ+P YFY LLL LGWNE +A
Sbjct  335  LWVQFKKEADYTVTEAKRSIINNNTQIPPYFYVLLLVLGWNEFMA  379


>CDD:461768 pfam05879, RHD3, Root hair defective 3 GTP-binding protein (RHD3). 
 This family consists of several eukaryotic root hair 
defective 3 like GTP-binding proteins. It has been speculated 
that the RHD3 protein is a member of a novel class of GTP-binding 
proteins that is widespread in eukaryotes and required 
for regulated cell enlargement. The family also contains 
the homologous yeast synthetic enhancement of YOP1 (SEY1) protein 
which is involved in membrane trafficking.
Length=243

 Score = 449 bits (1156),  Expect = 5e-155, Method: Composition-based stats.
 Identities = 179/264 (68%), Positives = 200/264 (76%), Gaps = 21/264 (8%)

Query  58   FGSQSTGKSTLLNHLFGTHFSVMSDSERRQTTKGIWMSKNKREGEATVDPTLRMADNILV  117
            FGSQSTGKSTLLNHLFGT+FSVM  S R+QTTKGIW++K K  G         M  NILV
Sbjct  1    FGSQSTGKSTLLNHLFGTNFSVMDASGRQQTTKGIWLAKCKGIG--------NMEPNILV  52

Query  118  MDVEGTDGRERGEDQDFERKSALFALATSEVLIVNIWEHQVGLYQGANMGLLKTVFEVNL  177
            MDVEGTDGRERGEDQDFERKSALFALATSEVLIVN+WEHQVGLYQGANMGLLKTVFEVNL
Sbjct  53   MDVEGTDGRERGEDQDFERKSALFALATSEVLIVNMWEHQVGLYQGANMGLLKTVFEVNL  112

Query  178  QLFLKDKNTTHRSLLFFVIRDFVGTTPLKNLQKTLMEDMARLWESISKPPGLESSSVHDY  237
            QLF KDK+  H++LL FVIRD VG TPL+NL+ TL ED+ ++W+S+SKP GLE+S ++D+
Sbjct  113  QLFGKDKDNPHKTLLLFVIRDHVGVTPLENLEDTLREDLQKIWDSLSKPAGLENSPLNDF  172

Query  238  FDFQFYGLPHKSYQPEQFVAETKKLSLRFREGQRDPSMDARRGEFSEGGVFLPEYHRRIP  297
            FD +F  LPHK  Q +QF  E KKL  RF                   G F PEYH RIP
Sbjct  173  FDVEFVALPHKELQEDQFKEEVKKLRQRFVHSI-------------SPGGFAPEYHGRIP  219

Query  298  ADGFSRYAEGIWDQIVNNKDLDLP  321
            ADGFS YAE IWDQI NNKDLDLP
Sbjct  220  ADGFSFYAEQIWDQIENNKDLDLP  243



Lambda      K        H        a         alpha
   0.316    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1008420336


Query= TCONS_00007490

Length=780
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466577 pfam20428, Sey1_3HB, Sey1 three-helix bundle domain. T...  522     0.0   
CDD:461768 pfam05879, RHD3, Root hair defective 3 GTP-binding pro...  449     3e-155


>CDD:466577 pfam20428, Sey1_3HB, Sey1 three-helix bundle domain.  This is 
the three-helix bundle (3HB) domain found at the C-terminal 
of Sey1 from yeast and RHD3 from Arabidopsis, GTP-binding proteins 
involved in homotypic membrane fusion of the endoplasmic 
reticulum. This is a stalk-like domain composed of four 
3HBs that interacts with its own GTPase domain and that of 
a neighbouring molecule, to undergo major conformational changes 
during the GTP cycle to drive membrane fusion.
Length=419

 Score = 522 bits (1347),  Expect = 0.0, Method: Composition-based stats.
 Identities = 206/418 (49%), Positives = 256/418 (61%), Gaps = 31/418 (7%)

Query  367  GGLGAAMRSSRAKAVKNFETEASRYHKGVYQRKRAELESKVDTRLKALLQGQLNAAHKSG  426
            GGLGA + S R K +  ++TEASRY+KGVYQ KR ELE K+D+ LK   Q QL A HK  
Sbjct  1    GGLGAKLASIREKCLSEYDTEASRYNKGVYQEKRQELEEKLDSHLKPTFQAQLGALHKGL  60

Query  427  INEFSEAVSSSVKSGQKQGAGYDFAEIVNEEVKKAIAKFEDVARSTVVEGTTWSDYKQEL  486
            +  F EAVSS++K+G+       FAE V +   K + KF++   S  +EG  W D  +  
Sbjct  61   LESFKEAVSSALKAGE------GFAESVKDLKTKCVEKFDEECESASIEGALW-DTSKIR  113

Query  487  ALYEKELADVSGRLRREEMRRLANRVERWVQSRLGESVGLEFNALGSGRAGGGAPETGEK  546
               EK++   S RLR+EE++ L NR E+ + S L E V L  N L               
Sbjct  114  LKLEKDIDAHSARLRKEELKELTNRYEKKLSSALSEPVELLLNKL---------------  158

Query  547  PLEKAFWDRVWNVFVETVLDAERRFTDRASSFDASLEEVDVGLWRLRRKSWGVLRAKIDE  606
               K  WD V  +F   V DA  RF DR   FD S EE D  L  L+RKSWGVLR KI E
Sbjct  159  --NKETWDTVLKLFKREVEDAVSRFKDRVDFFDLSEEENDKMLKNLKRKSWGVLRTKIHE  216

Query  607  EMTEGNLLLKLRENFEDKFRYDDAGVPRIWRPTDDIEGIYTRARESTLTLIPLLSRFRLA  666
            E +E NLL++LR+ FEDKFRYD  G+PR+W   +DIEGIY  ARE  L L+P+LSR RL+
Sbjct  217  EASEENLLMRLRDRFEDKFRYDSDGMPRLWTGKEDIEGIYKVAREHALKLLPVLSRIRLS  276

Query  667  ETS--APPPLDRWIGHTPSSATPADEEDLPPIGGVDEEEGKSLDEE---MMILSEAKRQE  721
            + S   PP L R +G T SSATP+  EDLPPIGGVDE    +L+E      IL+E +++ 
Sbjct  277  DGSDNIPPTLTRALGDTTSSATPS--EDLPPIGGVDELASSTLEEVPPSATILTEVQKKS  334

Query  722  LTVRFKKAADGVYVEAKRSAIGGMTQVPLYFYGLLLALGWNEIIAVLRNPAYFFLLFI  779
            L V+FKK AD    EAKRS I   TQ+P YFY LLL LGWNE +AVLRNP YFFLL +
Sbjct  335  LWVQFKKEADYTVTEAKRSIINNNTQIPPYFYVLLLVLGWNEFMAVLRNPLYFFLLLL  392


>CDD:461768 pfam05879, RHD3, Root hair defective 3 GTP-binding protein (RHD3). 
 This family consists of several eukaryotic root hair 
defective 3 like GTP-binding proteins. It has been speculated 
that the RHD3 protein is a member of a novel class of GTP-binding 
proteins that is widespread in eukaryotes and required 
for regulated cell enlargement. The family also contains 
the homologous yeast synthetic enhancement of YOP1 (SEY1) protein 
which is involved in membrane trafficking.
Length=243

 Score = 449 bits (1157),  Expect = 3e-155, Method: Composition-based stats.
 Identities = 179/264 (68%), Positives = 200/264 (76%), Gaps = 21/264 (8%)

Query  58   FGSQSTGKSTLLNHLFGTHFSVMSDSERRQTTKGIWMSKNKREGEATVDPTLRMADNILV  117
            FGSQSTGKSTLLNHLFGT+FSVM  S R+QTTKGIW++K K  G         M  NILV
Sbjct  1    FGSQSTGKSTLLNHLFGTNFSVMDASGRQQTTKGIWLAKCKGIG--------NMEPNILV  52

Query  118  MDVEGTDGRERGEDQDFERKSALFALATSEVLIVNIWEHQVGLYQGANMGLLKTVFEVNL  177
            MDVEGTDGRERGEDQDFERKSALFALATSEVLIVN+WEHQVGLYQGANMGLLKTVFEVNL
Sbjct  53   MDVEGTDGRERGEDQDFERKSALFALATSEVLIVNMWEHQVGLYQGANMGLLKTVFEVNL  112

Query  178  QLFLKDKNTTHRSLLFFVIRDFVGTTPLKNLQKTLMEDMARLWESISKPPGLESSSVHDY  237
            QLF KDK+  H++LL FVIRD VG TPL+NL+ TL ED+ ++W+S+SKP GLE+S ++D+
Sbjct  113  QLFGKDKDNPHKTLLLFVIRDHVGVTPLENLEDTLREDLQKIWDSLSKPAGLENSPLNDF  172

Query  238  FDFQFYGLPHKSYQPEQFVAETKKLSLRFREGQRDPSMDARRGEFSEGGVFLPEYHRRIP  297
            FD +F  LPHK  Q +QF  E KKL  RF                   G F PEYH RIP
Sbjct  173  FDVEFVALPHKELQEDQFKEEVKKLRQRFVHSI-------------SPGGFAPEYHGRIP  219

Query  298  ADGFSRYAEGIWDQIVNNKDLDLP  321
            ADGFS YAE IWDQI NNKDLDLP
Sbjct  220  ADGFSFYAEQIWDQIENNKDLDLP  243



Lambda      K        H        a         alpha
   0.317    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 998234272


Query= TCONS_00002069

Length=864
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466577 pfam20428, Sey1_3HB, Sey1 three-helix bundle domain. T...  561     0.0   
CDD:461768 pfam05879, RHD3, Root hair defective 3 GTP-binding pro...  450     1e-154


>CDD:466577 pfam20428, Sey1_3HB, Sey1 three-helix bundle domain.  This is 
the three-helix bundle (3HB) domain found at the C-terminal 
of Sey1 from yeast and RHD3 from Arabidopsis, GTP-binding proteins 
involved in homotypic membrane fusion of the endoplasmic 
reticulum. This is a stalk-like domain composed of four 
3HBs that interacts with its own GTPase domain and that of 
a neighbouring molecule, to undergo major conformational changes 
during the GTP cycle to drive membrane fusion.
Length=419

 Score = 561 bits (1447),  Expect = 0.0, Method: Composition-based stats.
 Identities = 214/445 (48%), Positives = 271/445 (61%), Gaps = 31/445 (7%)

Query  367  GGLGAAMRSSRAKAVKNFETEASRYHKGVYQRKRAELESKVDTRLKALLQGQLNAAHKSG  426
            GGLGA + S R K +  ++TEASRY+KGVYQ KR ELE K+D+ LK   Q QL A HK  
Sbjct  1    GGLGAKLASIREKCLSEYDTEASRYNKGVYQEKRQELEEKLDSHLKPTFQAQLGALHKGL  60

Query  427  INEFSEAVSSSVKSGQKQGAGYDFAEIVNEEVKKAIAKFEDVARSTVVEGTTWSDYKQEL  486
            +  F EAVSS++K+G+       FAE V +   K + KF++   S  +EG  W D  +  
Sbjct  61   LESFKEAVSSALKAGE------GFAESVKDLKTKCVEKFDEECESASIEGALW-DTSKIR  113

Query  487  ALYEKELADVSGRLRREEMRRLANRVERWVQSRLGESVGLEFNALGSGRAGGGAPETGEK  546
               EK++   S RLR+EE++ L NR E+ + S L E V L  N L               
Sbjct  114  LKLEKDIDAHSARLRKEELKELTNRYEKKLSSALSEPVELLLNKL---------------  158

Query  547  PLEKAFWDRVWNVFVETVLDAERRFTDRASSFDASLEEVDVGLWRLRRKSWGVLRAKIDE  606
               K  WD V  +F   V DA  RF DR   FD S EE D  L  L+RKSWGVLR KI E
Sbjct  159  --NKETWDTVLKLFKREVEDAVSRFKDRVDFFDLSEEENDKMLKNLKRKSWGVLRTKIHE  216

Query  607  EMTEGNLLLKLRENFEDKFRYDDAGVPRIWRPTDDIEGIYTRARESTLTLIPLLSRFRLA  666
            E +E NLL++LR+ FEDKFRYD  G+PR+W   +DIEGIY  ARE  L L+P+LSR RL+
Sbjct  217  EASEENLLMRLRDRFEDKFRYDSDGMPRLWTGKEDIEGIYKVAREHALKLLPVLSRIRLS  276

Query  667  ETS--APPPLDRWIGHTPSSATPADEEDLPPIGGVDEEEGKSLDEE---MMILSEAKRQE  721
            + S   PP L R +G T SSATP+  EDLPPIGGVDE    +L+E      IL+E +++ 
Sbjct  277  DGSDNIPPTLTRALGDTTSSATPS--EDLPPIGGVDELASSTLEEVPPSATILTEVQKKS  334

Query  722  LTVRFKKAADGVYVEAKRSAIGGMTQVPLYFYGLLLALGWNEIIAVLRNPAYFFLLFICA  781
            L V+FKK AD    EAKRS I   TQ+P YFY LLL LGWNE +AVLRNP YFFLL +  
Sbjct  335  LWVQFKKEADYTVTEAKRSIINNNTQIPPYFYVLLLVLGWNEFMAVLRNPLYFFLLLLLG  394

Query  782  VGAYVTYQLNLWGPIIKMTEAASSQ  806
               YV Y L+L GP++ + + A+ +
Sbjct  395  KTLYVQYDLSLSGPVMNVLQRAAEE  419


>CDD:461768 pfam05879, RHD3, Root hair defective 3 GTP-binding protein (RHD3). 
 This family consists of several eukaryotic root hair 
defective 3 like GTP-binding proteins. It has been speculated 
that the RHD3 protein is a member of a novel class of GTP-binding 
proteins that is widespread in eukaryotes and required 
for regulated cell enlargement. The family also contains 
the homologous yeast synthetic enhancement of YOP1 (SEY1) protein 
which is involved in membrane trafficking.
Length=243

 Score = 450 bits (1160),  Expect = 1e-154, Method: Composition-based stats.
 Identities = 179/264 (68%), Positives = 200/264 (76%), Gaps = 21/264 (8%)

Query  58   FGSQSTGKSTLLNHLFGTHFSVMSDSERRQTTKGIWMSKNKREGEATVDPTLRMADNILV  117
            FGSQSTGKSTLLNHLFGT+FSVM  S R+QTTKGIW++K K  G         M  NILV
Sbjct  1    FGSQSTGKSTLLNHLFGTNFSVMDASGRQQTTKGIWLAKCKGIG--------NMEPNILV  52

Query  118  MDVEGTDGRERGEDQDFERKSALFALATSEVLIVNIWEHQVGLYQGANMGLLKTVFEVNL  177
            MDVEGTDGRERGEDQDFERKSALFALATSEVLIVN+WEHQVGLYQGANMGLLKTVFEVNL
Sbjct  53   MDVEGTDGRERGEDQDFERKSALFALATSEVLIVNMWEHQVGLYQGANMGLLKTVFEVNL  112

Query  178  QLFLKDKNTTHRSLLFFVIRDFVGTTPLKNLQKTLMEDMARLWESISKPPGLESSSVHDY  237
            QLF KDK+  H++LL FVIRD VG TPL+NL+ TL ED+ ++W+S+SKP GLE+S ++D+
Sbjct  113  QLFGKDKDNPHKTLLLFVIRDHVGVTPLENLEDTLREDLQKIWDSLSKPAGLENSPLNDF  172

Query  238  FDFQFYGLPHKSYQPEQFVAETKKLSLRFREGQRDPSMDARRGEFSEGGVFLPEYHRRIP  297
            FD +F  LPHK  Q +QF  E KKL  RF                   G F PEYH RIP
Sbjct  173  FDVEFVALPHKELQEDQFKEEVKKLRQRFVHSI-------------SPGGFAPEYHGRIP  219

Query  298  ADGFSRYAEGIWDQIVNNKDLDLP  321
            ADGFS YAE IWDQI NNKDLDLP
Sbjct  220  ADGFSFYAEQIWDQIENNKDLDLP  243



Lambda      K        H        a         alpha
   0.316    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1103910266


Query= TCONS_00007491

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00002070

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00007492

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462573 pfam08711, Med26, TFIIS helical bundle-like domain. Me...  61.0    3e-13


>CDD:462573 pfam08711, Med26, TFIIS helical bundle-like domain.  Mediator 
is a large complex of up to 33 proteins that is conserved from 
plants to fungi to humans - the number and representation 
of individual subunits varying with species {1-2]. It is arranged 
into four different sections, a core, a head, a tail 
and a kinase-activity part, and the number of subunits within 
each of these is what varies with species. Overall, Mediator 
regulates the transcriptional activity of RNA polymerase 
II but it would appear that each of the four different sections 
has a slightly different function. Mediator exists in two 
major forms in human cells: a smaller form that interacts 
strongly with pol II and activates transcription, and a large 
form that does not interact strongly with pol II and does 
not directly activate transcription. Notably, the 'small' and 
'large' Mediator complexes differ in their subunit composition: 
the Med26 subunit preferentially associates with the 
small, active complex, whereas cdk8, cyclin C, Med12 and Med13 
associate with the large Mediator complex. This family includesthe 
C terminal region of a number of eukaryotic hypothetical 
proteins which are homologous to the Saccharomyces cerevisiae 
protein IWS1. IWS1 is known to be an Pol II transcription 
elongation factor and interacts with Spt6 and Spt5.
Length=52

 Score = 61.0 bits (149),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 21/53 (40%), Positives = 32/53 (60%), Gaps = 1/53 (2%)

Query  90   DLMTALSKLPINKETLIASGIGKVIVFYTKSKRPEPGIKRMAERLLAEWTRPI  142
             L+  L KLP+  E L ++GIGKV+    K K   P IK++A+ L+ +W R +
Sbjct  1    KLLKKLEKLPVTLELLKSTGIGKVVNKLRKHK-ENPEIKKLAKELVKKWKRLV  52



Lambda      K        H        a         alpha
   0.318    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00002072

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464011 pfam13874, Nup54, Nucleoporin complex subunit 54. This...  159     4e-50


>CDD:464011 pfam13874, Nup54, Nucleoporin complex subunit 54.  This is the 
human Nup54 subunit of the nucleoporin complex, equivalent 
to Nup57 of yeast. Nup54, Nup58 and Nup62 all have similar 
affinities for importin-beta. It seems likely that they are 
the only FG-repeat nucleoporins of the central channel, and 
as such they would form a zone of equal affinity spanning the 
central channel. The diffusion of importin-beta import complexes 
through the central channel may be a stochastic process 
as the affinities are similar, whereas movement from cytoplasmic 
fibrils to the central channel and from the central 
channel to the nuclear basket would be facilitated by the subtle 
differences in affinity between them.
Length=139

 Score = 159 bits (404),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 64/139 (46%), Positives = 88/139 (63%), Gaps = 2/139 (1%)

Query  57   PTAEDDETKWEEALRERPG-SGYVPVLVRGFWELGKRAQRQKDFLTMAQTRLHEINNCLT  115
            P A  DE  WE+AL + P     VPV V GF +L KR + Q++ +   + RLHEIN  LT
Sbjct  1    PPAGIDEELWEQALSDNPDPEKLVPVPVIGFEDLKKRLKLQEEEVAAHRERLHEINEKLT  60

Query  116  DLLSRHDLKISVKIADCRRKHLVLSKRCLALAAKTQVLRNRGYAMDEAEEELKKKLAQLE  175
            +L  +HDL+ SV+I + +R+H  LS R L LA K +VLRNRGYA+   EE+L+K+L  L 
Sbjct  61   ELQQKHDLETSVRIEEAKRRHTELSHRLLRLARKLEVLRNRGYALSPEEEQLRKRLETLL  120

Query  176  RSVFNP-SLNGRAEEIWAR  193
            + + +P    GR  E+WAR
Sbjct  121  KQLNDPAQFKGRLNELWAR  139



Lambda      K        H        a         alpha
   0.318    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00002073

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  232     1e-71


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 232 bits (593),  Expect = 1e-71, Method: Composition-based stats.
 Identities = 111/382 (29%), Positives = 170/382 (45%), Gaps = 33/382 (9%)

Query  152  KTIQVSIAFAMVGHIILIISALPSVIAHPHGALGCFAVGLVIFGIGVGGFKSNIAPLIAE  211
            +TI +      +GHI+L +SA+PS+    H AL  F +GL +  +G GG K N++    +
Sbjct  2    RTIFLGSIIYAIGHILLALSAIPSLRPPVHVAL--FFIGLALIALGTGGIKPNVSSFGGD  59

Query  212  QHKETRSFIKVIPKTGERVIVDPAQTITRIFLYFYFMINVGALVGSIAMVYAEKYVGFWL  271
            Q +ET                DP +  +R F  FYF IN G+L+ +I   Y ++  G+ L
Sbjct  60   QFEET----------------DPRRR-SRFFSIFYFSINAGSLISTIITPYLQQNYGYPL  102

Query  272  AFLLPTIMFAFCPAVIFACRNKYEVTPATGSVSAKAFKLWAFALQGRWSWN--PVRFVRN  329
             F LP +       V       Y+  P  G+V  K FK+   A   +   N       + 
Sbjct  103  GFGLPAVGMIIALLVFLLGSRMYKKKPPKGNVLTKVFKVLPVAAWNKVKLNGSSAGIKKL  162

Query  330  CQSPDFWE----RVKPSRVQNKPEWMTFDDQWVDEVRRAVKACAVFLWYPVYWLAYGQMT  385
                   E     +    V      +      V+EV+R ++   +FL   ++W  Y QM 
Sbjct  163  HWLDWARELDALIILGIVVPGIFFNIWCTKTKVEEVKRLLRVLPLFLPLIMFWALYDQMG  222

Query  386  NNLTSQAATMQLN----GVPNDLINNLDPLALIIFIPIMDQFIYPGIRRMGFNFTPLKRI  441
             +   QA TM        +P       + + ++IFIPI D+ +YP  R+     TPL+++
Sbjct  223  TSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQKM  282

Query  442  YVGYFLASMSMIAAAVTQYYIYKMSPCGDHPSDCDKPAPINVWVQTLPYVLIAFSEIFTS  501
             VG FLAS++   AA+ Q       P         +  PI+V      Y+LI F E+F S
Sbjct  283  AVGLFLASLAFAIAAIVQLKRNDTGPEFPIA----QEVPISVLWLIPQYLLIGFGELFIS  338

Query  502  ITGYEYAFTKAPKNMKSLGTSS  523
            I G E+ +  APK+M SL T  
Sbjct  339  IGGLEFFYKLAPKSMTSLITGL  360



Lambda      K        H        a         alpha
   0.325    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00007493

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462573 pfam08711, Med26, TFIIS helical bundle-like domain. Me...  61.0    3e-13


>CDD:462573 pfam08711, Med26, TFIIS helical bundle-like domain.  Mediator 
is a large complex of up to 33 proteins that is conserved from 
plants to fungi to humans - the number and representation 
of individual subunits varying with species {1-2]. It is arranged 
into four different sections, a core, a head, a tail 
and a kinase-activity part, and the number of subunits within 
each of these is what varies with species. Overall, Mediator 
regulates the transcriptional activity of RNA polymerase 
II but it would appear that each of the four different sections 
has a slightly different function. Mediator exists in two 
major forms in human cells: a smaller form that interacts 
strongly with pol II and activates transcription, and a large 
form that does not interact strongly with pol II and does 
not directly activate transcription. Notably, the 'small' and 
'large' Mediator complexes differ in their subunit composition: 
the Med26 subunit preferentially associates with the 
small, active complex, whereas cdk8, cyclin C, Med12 and Med13 
associate with the large Mediator complex. This family includesthe 
C terminal region of a number of eukaryotic hypothetical 
proteins which are homologous to the Saccharomyces cerevisiae 
protein IWS1. IWS1 is known to be an Pol II transcription 
elongation factor and interacts with Spt6 and Spt5.
Length=52

 Score = 61.0 bits (149),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 21/53 (40%), Positives = 32/53 (60%), Gaps = 1/53 (2%)

Query  90   DLMTALSKLPINKETLIASGIGKVIVFYTKSKRPEPGIKRMAERLLAEWTRPI  142
             L+  L KLP+  E L ++GIGKV+    K K   P IK++A+ L+ +W R +
Sbjct  1    KLLKKLEKLPVTLELLKSTGIGKVVNKLRKHK-ENPEIKKLAKELVKKWKRLV  52



Lambda      K        H        a         alpha
   0.318    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0725    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00002075

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  165     1e-48


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 165 bits (421),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 61/199 (31%), Positives = 99/199 (50%), Gaps = 8/199 (4%)

Query  80   MTFDDQWVDEVRRAVKACAVFLWYPVYWLAYGQMTNNLTSQAATMQLN----GVPNDLIN  135
            +      V+EV+R ++   +FL   ++W  Y QM  +   QA TM        +P     
Sbjct  188  IWCTKTKVEEVKRLLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQ  247

Query  136  NLDPLALIIFIPIMDQFIYPGIRRMGFNFTPLKRIYVGYFLASMSMIAAAVTQYYIYKMS  195
              + + ++IFIPI D+ +YP  R+     TPL+++ VG FLAS++   AA+ Q       
Sbjct  248  AFNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTG  307

Query  196  PCGDHPSDCDKPAPINVWVQTLPYVLIAFSEIFTSITGYEYAFTKAPKNMKSLVQSIYLF  255
            P         +  PI+V      Y+LI F E+F SI G E+ +  APK+M SL+  ++L 
Sbjct  308  PEFPIA----QEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLITGLFLL  363

Query  256  MNAISSAIQQGLTALSTDP  274
             NA+ + +   +  L+  P
Sbjct  364  TNALGNFLSGVIATLTAKP  382



Lambda      K        H        a         alpha
   0.323    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00002076

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462573 pfam08711, Med26, TFIIS helical bundle-like domain. Me...  61.0    3e-13


>CDD:462573 pfam08711, Med26, TFIIS helical bundle-like domain.  Mediator 
is a large complex of up to 33 proteins that is conserved from 
plants to fungi to humans - the number and representation 
of individual subunits varying with species {1-2]. It is arranged 
into four different sections, a core, a head, a tail 
and a kinase-activity part, and the number of subunits within 
each of these is what varies with species. Overall, Mediator 
regulates the transcriptional activity of RNA polymerase 
II but it would appear that each of the four different sections 
has a slightly different function. Mediator exists in two 
major forms in human cells: a smaller form that interacts 
strongly with pol II and activates transcription, and a large 
form that does not interact strongly with pol II and does 
not directly activate transcription. Notably, the 'small' and 
'large' Mediator complexes differ in their subunit composition: 
the Med26 subunit preferentially associates with the 
small, active complex, whereas cdk8, cyclin C, Med12 and Med13 
associate with the large Mediator complex. This family includesthe 
C terminal region of a number of eukaryotic hypothetical 
proteins which are homologous to the Saccharomyces cerevisiae 
protein IWS1. IWS1 is known to be an Pol II transcription 
elongation factor and interacts with Spt6 and Spt5.
Length=52

 Score = 61.0 bits (149),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 21/53 (40%), Positives = 32/53 (60%), Gaps = 1/53 (2%)

Query  90   DLMTALSKLPINKETLIASGIGKVIVFYTKSKRPEPGIKRMAERLLAEWTRPI  142
             L+  L KLP+  E L ++GIGKV+    K K   P IK++A+ L+ +W R +
Sbjct  1    KLLKKLEKLPVTLELLKSTGIGKVVNKLRKHK-ENPEIKKLAKELVKKWKRLV  52



Lambda      K        H        a         alpha
   0.318    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00002078

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00002079

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00007494

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00007495

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00002080

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00002081

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00002084

Length=564


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 705370016


Query= TCONS_00002082

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.133    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00002083

Length=564


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 705370016


Query= TCONS_00002085

Length=564


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 705370016


Query= TCONS_00002086

Length=564


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 705370016


Query= TCONS_00007496

Length=564


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 705370016


Query= TCONS_00002087

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.117    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00002088

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.117    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00002089

Length=557
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460841 pfam03190, Thioredox_DsbH, Protein of unknown function...  180     1e-54


>CDD:460841 pfam03190, Thioredox_DsbH, Protein of unknown function, DUF255. 
 
Length=163

 Score = 180 bits (459),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 58/106 (55%), Positives = 77/106 (73%), Gaps = 5/106 (5%)

Query  3    QEVASLLNESFIPIKVDREERPDIDDVYMNYVQATTGSGGWPLSVFLTPNLEPVFGGTYW  62
             EVA++LNE F+PIKVDREERPDID +YM  VQA TGSGGWPL+VFLTP+ +P FGGTY+
Sbjct  63   PEVAAILNEHFVPIKVDREERPDIDRIYMTAVQALTGSGGWPLTVFLTPDGKPFFGGTYF  122

Query  63   PGPNSSTLSRQDTVGFVDILEKLRDVWKTQQQRCLDSAKEITRQLR  108
            P        R    GF+D+LEK+ + W+  ++  L+SA+E+   L+
Sbjct  123  PPE-----DRYGRPGFLDVLEKIAEAWREDREELLESAEELLEALQ  163



Lambda      K        H        a         alpha
   0.317    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 694909020


Query= TCONS_00007497

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00007498

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00007499

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460841 pfam03190, Thioredox_DsbH, Protein of unknown function...  180     1e-54


>CDD:460841 pfam03190, Thioredox_DsbH, Protein of unknown function, DUF255. 
 
Length=163

 Score = 180 bits (460),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 58/106 (55%), Positives = 77/106 (73%), Gaps = 5/106 (5%)

Query  3    QEVASLLNESFIPIKVDREERPDIDDVYMNYVQATTGSGGWPLSVFLTPNLEPVFGGTYW  62
             EVA++LNE F+PIKVDREERPDID +YM  VQA TGSGGWPL+VFLTP+ +P FGGTY+
Sbjct  63   PEVAAILNEHFVPIKVDREERPDIDRIYMTAVQALTGSGGWPLTVFLTPDGKPFFGGTYF  122

Query  63   PGPNSSTLSRQDTVGFVDILEKLRDVWKTQQQRCLDSAKEITRQLR  108
            P        R    GF+D+LEK+ + W+  ++  L+SA+E+   L+
Sbjct  123  PPE-----DRYGRPGFLDVLEKIAEAWREDREELLESAEELLEALQ  163



Lambda      K        H        a         alpha
   0.318    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00002090

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00007500

Length=729
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460841 pfam03190, Thioredox_DsbH, Protein of unknown function...  197     5e-60


>CDD:460841 pfam03190, Thioredox_DsbH, Protein of unknown function, DUF255. 
 
Length=163

 Score = 197 bits (504),  Expect = 5e-60, Method: Composition-based stats.
 Identities = 62/114 (54%), Positives = 81/114 (71%), Gaps = 5/114 (4%)

Query  1    MEKESFMSQEVASLLNESFIPIKVDREERPDIDDVYMNYVQATTGSGGWPLSVFLTPNLE  60
            M  ESF   EVA++LNE F+PIKVDREERPDID +YM  VQA TGSGGWPL+VFLTP+ +
Sbjct  55   MAHESFEDPEVAAILNEHFVPIKVDREERPDIDRIYMTAVQALTGSGGWPLTVFLTPDGK  114

Query  61   PVFGGTYWPGPNSSTLSRQDTVGFVDILEKLRDVWKTQQQRCLDSAKEITRQLR  114
            P FGGTY+P        R    GF+D+LEK+ + W+  ++  L+SA+E+   L+
Sbjct  115  PFFGGTYFPPE-----DRYGRPGFLDVLEKIAEAWREDREELLESAEELLEALQ  163



Lambda      K        H        a         alpha
   0.318    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 924021520


Query= TCONS_00002091

Length=723
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460841 pfam03190, Thioredox_DsbH, Protein of unknown function...  183     1e-54


>CDD:460841 pfam03190, Thioredox_DsbH, Protein of unknown function, DUF255. 
 
Length=163

 Score = 183 bits (466),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 58/106 (55%), Positives = 77/106 (73%), Gaps = 5/106 (5%)

Query  3    QEVASLLNESFIPIKVDREERPDIDDVYMNYVQATTGSGGWPLSVFLTPNLEPVFGGTYW  62
             EVA++LNE F+PIKVDREERPDID +YM  VQA TGSGGWPL+VFLTP+ +P FGGTY+
Sbjct  63   PEVAAILNEHFVPIKVDREERPDIDRIYMTAVQALTGSGGWPLTVFLTPDGKPFFGGTYF  122

Query  63   PGPNSSTLSRQDTVGFVDILEKLRDVWKTQQQRCLDSAKEITRQLR  108
            P        R    GF+D+LEK+ + W+  ++  L+SA+E+   L+
Sbjct  123  PPE-----DRYGRPGFLDVLEKIAEAWREDREELLESAEELLEALQ  163



Lambda      K        H        a         alpha
   0.318    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 915290608


Query= TCONS_00002093

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463675 pfam12701, LSM14, Scd6-like Sm domain. The Scd6-like S...  128     2e-36
CDD:430668 pfam09532, FDF, FDF domain. The FDF domain, so called ...  122     4e-34


>CDD:463675 pfam12701, LSM14, Scd6-like Sm domain.  The Scd6-like Sm domain 
is found in Scd6p from S. cerevisiae, Rap55 from the newt 
Pleurodeles walt, and its orthologs from fungi, animals, plants 
and apicomplexans. The domain is also found in Dcp3p and 
the human EDC3/FLJ21128 protein where it is fused to the the 
Rossmanoid YjeF-N domain. In addition both EDC3 and Scd6p 
are found fused to the FDF domain.
Length=75

 Score = 128 bits (323),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 48/74 (65%), Positives = 55/74 (74%), Gaps = 2/74 (3%)

Query  7   IGQRFNLISKSDIRYVGTLHEINPEASTIALENVVSFGTEGRRGNPAEEIPPSASVYEYI  66
           IG R +LISKSDIRY G LH I+ E STI L+NV SFGTEGR   P  + PPS  VYEYI
Sbjct  3   IGSRISLISKSDIRYEGILHSIDTEDSTITLKNVRSFGTEGRGPGP--QEPPSDEVYEYI  60

Query  67  VFRGSDVKDISVAE  80
           VFRGSD+KD+ + E
Sbjct  61  VFRGSDIKDLKILE  74


>CDD:430668 pfam09532, FDF, FDF domain.  The FDF domain, so called because 
of the conserved FDF at its N termini, is an entirely alpha-helical 
domain with multiple exposed hydrophilic loops. It 
is found at the C-terminus of Scd6p-like SM domains. It is 
also found with other divergent Sm domains and in proteins such 
as Dcp3p and FLJ21128, where it is found N terminal to the 
YjeF-N domain, a novel Rossmann fold domain.
Length=104

 Score = 122 bits (309),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 50/107 (47%), Gaps = 3/107 (3%)

Query  410  EVPDTDYDFESANAKFNKQDLVKEAIATGSPVTEAGAHVENGEVEAVDTAHHAPSTTASA  469
               D D+DFES NAKFNKQ++  E         E     EN         +  P+     
Sbjct  1    IKFDEDFDFESNNAKFNKQEVFAELRKNDKLDEEKRLVNEN--NATRVATNEQPNEEVKG  58

Query  470  YNKSASFFDNISSEARDREERSGGRPGGREWRGEEEKRNIETFGQGS  516
              K   FFDNISSEA DR  +SG  P GR+WR E      ETFG  S
Sbjct  59   VYKKDDFFDNISSEANDRGIQSGPSPSGRDWREERSLNT-ETFGVDS  104



Lambda      K        H        a         alpha
   0.309    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 711347728


Query= TCONS_00002092

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430668 pfam09532, FDF, FDF domain. The FDF domain, so called ...  124     6e-35


>CDD:430668 pfam09532, FDF, FDF domain.  The FDF domain, so called because 
of the conserved FDF at its N termini, is an entirely alpha-helical 
domain with multiple exposed hydrophilic loops. It 
is found at the C-terminus of Scd6p-like SM domains. It is 
also found with other divergent Sm domains and in proteins such 
as Dcp3p and FLJ21128, where it is found N terminal to the 
YjeF-N domain, a novel Rossmann fold domain.
Length=104

 Score = 124 bits (312),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 50/107 (47%), Gaps = 3/107 (3%)

Query  308  EVPDTDYDFESANAKFNKQDLVKEAIATGSPVTEAGAHVENGEVEAVDTAHHAPSTTASA  367
               D D+DFES NAKFNKQ++  E         E     EN         +  P+     
Sbjct  1    IKFDEDFDFESNNAKFNKQEVFAELRKNDKLDEEKRLVNEN--NATRVATNEQPNEEVKG  58

Query  368  YNKSASFFDNISSEARDREERSGGRPGGREWRGEEEKRNIETFGQGS  414
              K   FFDNISSEA DR  +SG  P GR+WR E      ETFG  S
Sbjct  59   VYKKDDFFDNISSEANDRGIQSGPSPSGRDWREERSLNT-ETFGVDS  104



Lambda      K        H        a         alpha
   0.308    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00007501

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463675 pfam12701, LSM14, Scd6-like Sm domain. The Scd6-like S...  128     2e-36
CDD:430668 pfam09532, FDF, FDF domain. The FDF domain, so called ...  122     4e-34


>CDD:463675 pfam12701, LSM14, Scd6-like Sm domain.  The Scd6-like Sm domain 
is found in Scd6p from S. cerevisiae, Rap55 from the newt 
Pleurodeles walt, and its orthologs from fungi, animals, plants 
and apicomplexans. The domain is also found in Dcp3p and 
the human EDC3/FLJ21128 protein where it is fused to the the 
Rossmanoid YjeF-N domain. In addition both EDC3 and Scd6p 
are found fused to the FDF domain.
Length=75

 Score = 128 bits (323),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 48/74 (65%), Positives = 55/74 (74%), Gaps = 2/74 (3%)

Query  7   IGQRFNLISKSDIRYVGTLHEINPEASTIALENVVSFGTEGRRGNPAEEIPPSASVYEYI  66
           IG R +LISKSDIRY G LH I+ E STI L+NV SFGTEGR   P  + PPS  VYEYI
Sbjct  3   IGSRISLISKSDIRYEGILHSIDTEDSTITLKNVRSFGTEGRGPGP--QEPPSDEVYEYI  60

Query  67  VFRGSDVKDISVAE  80
           VFRGSD+KD+ + E
Sbjct  61  VFRGSDIKDLKILE  74


>CDD:430668 pfam09532, FDF, FDF domain.  The FDF domain, so called because 
of the conserved FDF at its N termini, is an entirely alpha-helical 
domain with multiple exposed hydrophilic loops. It 
is found at the C-terminus of Scd6p-like SM domains. It is 
also found with other divergent Sm domains and in proteins such 
as Dcp3p and FLJ21128, where it is found N terminal to the 
YjeF-N domain, a novel Rossmann fold domain.
Length=104

 Score = 122 bits (309),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 50/107 (47%), Gaps = 3/107 (3%)

Query  410  EVPDTDYDFESANAKFNKQDLVKEAIATGSPVTEAGAHVENGEVEAVDTAHHAPSTTASA  469
               D D+DFES NAKFNKQ++  E         E     EN         +  P+     
Sbjct  1    IKFDEDFDFESNNAKFNKQEVFAELRKNDKLDEEKRLVNEN--NATRVATNEQPNEEVKG  58

Query  470  YNKSASFFDNISSEARDREERSGGRPGGREWRGEEEKRNIETFGQGS  516
              K   FFDNISSEA DR  +SG  P GR+WR E      ETFG  S
Sbjct  59   VYKKDDFFDNISSEANDRGIQSGPSPSGRDWREERSLNT-ETFGVDS  104



Lambda      K        H        a         alpha
   0.309    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 711347728


Query= TCONS_00002094

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463675 pfam12701, LSM14, Scd6-like Sm domain. The Scd6-like S...  128     2e-36
CDD:430668 pfam09532, FDF, FDF domain. The FDF domain, so called ...  122     4e-34


>CDD:463675 pfam12701, LSM14, Scd6-like Sm domain.  The Scd6-like Sm domain 
is found in Scd6p from S. cerevisiae, Rap55 from the newt 
Pleurodeles walt, and its orthologs from fungi, animals, plants 
and apicomplexans. The domain is also found in Dcp3p and 
the human EDC3/FLJ21128 protein where it is fused to the the 
Rossmanoid YjeF-N domain. In addition both EDC3 and Scd6p 
are found fused to the FDF domain.
Length=75

 Score = 128 bits (323),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 48/74 (65%), Positives = 55/74 (74%), Gaps = 2/74 (3%)

Query  7   IGQRFNLISKSDIRYVGTLHEINPEASTIALENVVSFGTEGRRGNPAEEIPPSASVYEYI  66
           IG R +LISKSDIRY G LH I+ E STI L+NV SFGTEGR   P  + PPS  VYEYI
Sbjct  3   IGSRISLISKSDIRYEGILHSIDTEDSTITLKNVRSFGTEGRGPGP--QEPPSDEVYEYI  60

Query  67  VFRGSDVKDISVAE  80
           VFRGSD+KD+ + E
Sbjct  61  VFRGSDIKDLKILE  74


>CDD:430668 pfam09532, FDF, FDF domain.  The FDF domain, so called because 
of the conserved FDF at its N termini, is an entirely alpha-helical 
domain with multiple exposed hydrophilic loops. It 
is found at the C-terminus of Scd6p-like SM domains. It is 
also found with other divergent Sm domains and in proteins such 
as Dcp3p and FLJ21128, where it is found N terminal to the 
YjeF-N domain, a novel Rossmann fold domain.
Length=104

 Score = 122 bits (309),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 50/107 (47%), Gaps = 3/107 (3%)

Query  410  EVPDTDYDFESANAKFNKQDLVKEAIATGSPVTEAGAHVENGEVEAVDTAHHAPSTTASA  469
               D D+DFES NAKFNKQ++  E         E     EN         +  P+     
Sbjct  1    IKFDEDFDFESNNAKFNKQEVFAELRKNDKLDEEKRLVNEN--NATRVATNEQPNEEVKG  58

Query  470  YNKSASFFDNISSEARDREERSGGRPGGREWRGEEEKRNIETFGQGS  516
              K   FFDNISSEA DR  +SG  P GR+WR E      ETFG  S
Sbjct  59   VYKKDDFFDNISSEANDRGIQSGPSPSGRDWREERSLNT-ETFGVDS  104



Lambda      K        H        a         alpha
   0.309    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 711347728


Query= TCONS_00007502

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463675 pfam12701, LSM14, Scd6-like Sm domain. The Scd6-like S...  128     2e-36
CDD:430668 pfam09532, FDF, FDF domain. The FDF domain, so called ...  122     4e-34


>CDD:463675 pfam12701, LSM14, Scd6-like Sm domain.  The Scd6-like Sm domain 
is found in Scd6p from S. cerevisiae, Rap55 from the newt 
Pleurodeles walt, and its orthologs from fungi, animals, plants 
and apicomplexans. The domain is also found in Dcp3p and 
the human EDC3/FLJ21128 protein where it is fused to the the 
Rossmanoid YjeF-N domain. In addition both EDC3 and Scd6p 
are found fused to the FDF domain.
Length=75

 Score = 128 bits (323),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 48/74 (65%), Positives = 55/74 (74%), Gaps = 2/74 (3%)

Query  7   IGQRFNLISKSDIRYVGTLHEINPEASTIALENVVSFGTEGRRGNPAEEIPPSASVYEYI  66
           IG R +LISKSDIRY G LH I+ E STI L+NV SFGTEGR   P  + PPS  VYEYI
Sbjct  3   IGSRISLISKSDIRYEGILHSIDTEDSTITLKNVRSFGTEGRGPGP--QEPPSDEVYEYI  60

Query  67  VFRGSDVKDISVAE  80
           VFRGSD+KD+ + E
Sbjct  61  VFRGSDIKDLKILE  74


>CDD:430668 pfam09532, FDF, FDF domain.  The FDF domain, so called because 
of the conserved FDF at its N termini, is an entirely alpha-helical 
domain with multiple exposed hydrophilic loops. It 
is found at the C-terminus of Scd6p-like SM domains. It is 
also found with other divergent Sm domains and in proteins such 
as Dcp3p and FLJ21128, where it is found N terminal to the 
YjeF-N domain, a novel Rossmann fold domain.
Length=104

 Score = 122 bits (309),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 50/107 (47%), Gaps = 3/107 (3%)

Query  410  EVPDTDYDFESANAKFNKQDLVKEAIATGSPVTEAGAHVENGEVEAVDTAHHAPSTTASA  469
               D D+DFES NAKFNKQ++  E         E     EN         +  P+     
Sbjct  1    IKFDEDFDFESNNAKFNKQEVFAELRKNDKLDEEKRLVNEN--NATRVATNEQPNEEVKG  58

Query  470  YNKSASFFDNISSEARDREERSGGRPGGREWRGEEEKRNIETFGQGS  516
              K   FFDNISSEA DR  +SG  P GR+WR E      ETFG  S
Sbjct  59   VYKKDDFFDNISSEANDRGIQSGPSPSGRDWREERSLNT-ETFGVDS  104



Lambda      K        H        a         alpha
   0.309    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0545    0.140     1.90     42.6     43.6 

Effective search space used: 711347728


Query= TCONS_00007503

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430668 pfam09532, FDF, FDF domain. The FDF domain, so called ...  124     6e-35


>CDD:430668 pfam09532, FDF, FDF domain.  The FDF domain, so called because 
of the conserved FDF at its N termini, is an entirely alpha-helical 
domain with multiple exposed hydrophilic loops. It 
is found at the C-terminus of Scd6p-like SM domains. It is 
also found with other divergent Sm domains and in proteins such 
as Dcp3p and FLJ21128, where it is found N terminal to the 
YjeF-N domain, a novel Rossmann fold domain.
Length=104

 Score = 124 bits (312),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 50/107 (47%), Gaps = 3/107 (3%)

Query  308  EVPDTDYDFESANAKFNKQDLVKEAIATGSPVTEAGAHVENGEVEAVDTAHHAPSTTASA  367
               D D+DFES NAKFNKQ++  E         E     EN         +  P+     
Sbjct  1    IKFDEDFDFESNNAKFNKQEVFAELRKNDKLDEEKRLVNEN--NATRVATNEQPNEEVKG  58

Query  368  YNKSASFFDNISSEARDREERSGGRPGGREWRGEEEKRNIETFGQGS  414
              K   FFDNISSEA DR  +SG  P GR+WR E      ETFG  S
Sbjct  59   VYKKDDFFDNISSEANDRGIQSGPSPSGRDWREERSLNT-ETFGVDS  104



Lambda      K        H        a         alpha
   0.308    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00002095

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463675 pfam12701, LSM14, Scd6-like Sm domain. The Scd6-like S...  128     2e-36
CDD:430668 pfam09532, FDF, FDF domain. The FDF domain, so called ...  122     4e-34


>CDD:463675 pfam12701, LSM14, Scd6-like Sm domain.  The Scd6-like Sm domain 
is found in Scd6p from S. cerevisiae, Rap55 from the newt 
Pleurodeles walt, and its orthologs from fungi, animals, plants 
and apicomplexans. The domain is also found in Dcp3p and 
the human EDC3/FLJ21128 protein where it is fused to the the 
Rossmanoid YjeF-N domain. In addition both EDC3 and Scd6p 
are found fused to the FDF domain.
Length=75

 Score = 128 bits (323),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 48/74 (65%), Positives = 55/74 (74%), Gaps = 2/74 (3%)

Query  7   IGQRFNLISKSDIRYVGTLHEINPEASTIALENVVSFGTEGRRGNPAEEIPPSASVYEYI  66
           IG R +LISKSDIRY G LH I+ E STI L+NV SFGTEGR   P  + PPS  VYEYI
Sbjct  3   IGSRISLISKSDIRYEGILHSIDTEDSTITLKNVRSFGTEGRGPGP--QEPPSDEVYEYI  60

Query  67  VFRGSDVKDISVAE  80
           VFRGSD+KD+ + E
Sbjct  61  VFRGSDIKDLKILE  74


>CDD:430668 pfam09532, FDF, FDF domain.  The FDF domain, so called because 
of the conserved FDF at its N termini, is an entirely alpha-helical 
domain with multiple exposed hydrophilic loops. It 
is found at the C-terminus of Scd6p-like SM domains. It is 
also found with other divergent Sm domains and in proteins such 
as Dcp3p and FLJ21128, where it is found N terminal to the 
YjeF-N domain, a novel Rossmann fold domain.
Length=104

 Score = 122 bits (309),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 50/107 (47%), Gaps = 3/107 (3%)

Query  410  EVPDTDYDFESANAKFNKQDLVKEAIATGSPVTEAGAHVENGEVEAVDTAHHAPSTTASA  469
               D D+DFES NAKFNKQ++  E         E     EN         +  P+     
Sbjct  1    IKFDEDFDFESNNAKFNKQEVFAELRKNDKLDEEKRLVNEN--NATRVATNEQPNEEVKG  58

Query  470  YNKSASFFDNISSEARDREERSGGRPGGREWRGEEEKRNIETFGQGS  516
              K   FFDNISSEA DR  +SG  P GR+WR E      ETFG  S
Sbjct  59   VYKKDDFFDNISSEANDRGIQSGPSPSGRDWREERSLNT-ETFGVDS  104



Lambda      K        H        a         alpha
   0.309    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 711347728


Query= TCONS_00002096

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463675 pfam12701, LSM14, Scd6-like Sm domain. The Scd6-like S...  128     3e-36
CDD:430668 pfam09532, FDF, FDF domain. The FDF domain, so called ...  124     2e-34


>CDD:463675 pfam12701, LSM14, Scd6-like Sm domain.  The Scd6-like Sm domain 
is found in Scd6p from S. cerevisiae, Rap55 from the newt 
Pleurodeles walt, and its orthologs from fungi, animals, plants 
and apicomplexans. The domain is also found in Dcp3p and 
the human EDC3/FLJ21128 protein where it is fused to the the 
Rossmanoid YjeF-N domain. In addition both EDC3 and Scd6p 
are found fused to the FDF domain.
Length=75

 Score = 128 bits (323),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 48/74 (65%), Positives = 55/74 (74%), Gaps = 2/74 (3%)

Query  7   IGQRFNLISKSDIRYVGTLHEINPEASTIALENVVSFGTEGRRGNPAEEIPPSASVYEYI  66
           IG R +LISKSDIRY G LH I+ E STI L+NV SFGTEGR   P  + PPS  VYEYI
Sbjct  3   IGSRISLISKSDIRYEGILHSIDTEDSTITLKNVRSFGTEGRGPGP--QEPPSDEVYEYI  60

Query  67  VFRGSDVKDISVAE  80
           VFRGSD+KD+ + E
Sbjct  61  VFRGSDIKDLKILE  74


>CDD:430668 pfam09532, FDF, FDF domain.  The FDF domain, so called because 
of the conserved FDF at its N termini, is an entirely alpha-helical 
domain with multiple exposed hydrophilic loops. It 
is found at the C-terminus of Scd6p-like SM domains. It is 
also found with other divergent Sm domains and in proteins such 
as Dcp3p and FLJ21128, where it is found N terminal to the 
YjeF-N domain, a novel Rossmann fold domain.
Length=104

 Score = 124 bits (312),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 50/107 (47%), Gaps = 3/107 (3%)

Query  430  EVPDTDYDFESANAKFNKQDLVKEAIATGSPVTEAGAHVENGEVEAVDTAHHAPSTTASA  489
               D D+DFES NAKFNKQ++  E         E     EN         +  P+     
Sbjct  1    IKFDEDFDFESNNAKFNKQEVFAELRKNDKLDEEKRLVNEN--NATRVATNEQPNEEVKG  58

Query  490  YNKSASFFDNISSEARDREERSGGRPGGREWRGEEEKRNIETFGQGS  536
              K   FFDNISSEA DR  +SG  P GR+WR E      ETFG  S
Sbjct  59   VYKKDDFFDNISSEANDRGIQSGPSPSGRDWREERSLNT-ETFGVDS  104



Lambda      K        H        a         alpha
   0.309    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 741236288


Query= TCONS_00002097

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430668 pfam09532, FDF, FDF domain. The FDF domain, so called ...  124     6e-35


>CDD:430668 pfam09532, FDF, FDF domain.  The FDF domain, so called because 
of the conserved FDF at its N termini, is an entirely alpha-helical 
domain with multiple exposed hydrophilic loops. It 
is found at the C-terminus of Scd6p-like SM domains. It is 
also found with other divergent Sm domains and in proteins such 
as Dcp3p and FLJ21128, where it is found N terminal to the 
YjeF-N domain, a novel Rossmann fold domain.
Length=104

 Score = 124 bits (312),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 50/107 (47%), Gaps = 3/107 (3%)

Query  308  EVPDTDYDFESANAKFNKQDLVKEAIATGSPVTEAGAHVENGEVEAVDTAHHAPSTTASA  367
               D D+DFES NAKFNKQ++  E         E     EN         +  P+     
Sbjct  1    IKFDEDFDFESNNAKFNKQEVFAELRKNDKLDEEKRLVNEN--NATRVATNEQPNEEVKG  58

Query  368  YNKSASFFDNISSEARDREERSGGRPGGREWRGEEEKRNIETFGQGS  414
              K   FFDNISSEA DR  +SG  P GR+WR E      ETFG  S
Sbjct  59   VYKKDDFFDNISSEANDRGIQSGPSPSGRDWREERSLNT-ETFGVDS  104



Lambda      K        H        a         alpha
   0.308    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00007504

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00007505

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00002099

Length=365


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00007506

Length=493


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00002100

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00007508

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00007509

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00007510

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00002103

Length=468


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00002104

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00002105

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00002106

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00002107

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00002108

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00002109

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00002110

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding                 88.4    8e-22
CDD:398829 pfam05368, NmrA, NmrA-like family. NmrA is a negative ...  75.8    9e-17


>CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding.  
Length=183

 Score = 88.4 bits (220),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 54/194 (28%), Positives = 83/194 (43%), Gaps = 20/194 (10%)

Query  9    GATGNLGPSVLNALLSAGFEVTVLTRAESDRSNH-NFGQARVVPVDYTSLDSLTAALKGQ  67
            GATG +G  ++  LL+ G EVT L R     ++  +     VV  D    D L  AL GQ
Sbjct  1    GATGKIGRLLVKQLLARGHEVTALVRNPEKLADLEDHPGVEVVDGDVLDPDDLAEALAGQ  60

Query  68   DVVVNTLGT--IPRDIHLRLIDAAIAAQVRRFIP-SEFGSDTTNPTAAKLPVYQDKVAIQ  124
            D V++ LG           +IDAA AA V+RF+  S  G     P        +    + 
Sbjct  61   DAVISALGGGGTDETGAKNIIDAAKAAGVKRFVLVSSLGVGDEVPGPFGPWNKE---MLG  117

Query  125  KYLQQKAAESAGSFSYTLLINGPFLDWGLTV---GFLLNWRGPEVELYDEGERKFSAT-T  180
             YL  K A      +  LL     LD+  T+   G+L +       +  +GE     + +
Sbjct  118  PYLAAKRA------AEELLRA-SGLDY--TIVRPGWLTDGPTTGYRVTGKGEPFKGGSIS  168

Query  181  LAGIAKGVVGIINN  194
             A +A  +V ++++
Sbjct  169  RADVADVLVALLDD  182


>CDD:398829 pfam05368, NmrA, NmrA-like family.  NmrA is a negative transcriptional 
regulator involved in the post-translational modification 
of the transcription factor AreA. NmrA is part of a 
system controlling nitrogen metabolite repression in fungi. 
This family only contains a few sequences as iteration results 
in significant matches to other Rossmann fold families.
Length=236

 Score = 75.8 bits (187),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 51/156 (33%), Positives = 72/156 (46%), Gaps = 17/156 (11%)

Query  5    VAIAGATGNLGPSVLNALLSAGFEVTVLTR-AESDRSN--HNFGQARVVPVDYTSLDSLT  61
            + + GATG  G SV+ A L AG +V  L R  +S+ +      G   +V  D    +SL 
Sbjct  1    ILVFGATGQQGGSVVRASLKAGHKVRALVRDPKSELAKSLKEAG-VELVKGDLDDKESLV  59

Query  62   AALKGQDVVVNTLGTIPRD---IHLRLIDAAIAAQVRRFIPSEFGS--DTTNPTAAKLPV  116
             ALKG DVV +  G           +L DAA  A V+ FIPS FG+  D +N     +P 
Sbjct  60   EALKGVDVVFSVTGFWAGKEIEDGKKLADAAKEAGVKHFIPSSFGNDNDISNGVEPAVPH  119

Query  117  YQDKVAIQKYLQQKAAESAG---SFSYTLLINGPFL  149
            +  K  I++Y+      + G   +F Y       FL
Sbjct  120  FDSKAEIERYI-----RALGIPYTFVYAGFFMQNFL  150



Lambda      K        H        a         alpha
   0.314    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00002111

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding                 65.7    9e-14


>CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding.  
Length=183

 Score = 65.7 bits (161),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query  22   GQARVVPVDYTSLDSLTAALKGQDVVVNTLGT--IPRDIHLRLIDAAIAAQVRRFIP-SE  78
                VV  D    D L  AL GQD V++ LG           +IDAA AA V+RF+  S 
Sbjct  38   PGVEVVDGDVLDPDDLAEALAGQDAVISALGGGGTDETGAKNIIDAAKAAGVKRFVLVSS  97

Query  79   FGSDTTNPTAAKLPVYQDKVAIQKYLQQKAAESAGSFSYTLLINGPFLDWGLTV---GFL  135
             G     P        +    +  YL  K A      +  LL     LD+  T+   G+L
Sbjct  98   LGVGDEVPGPFGPWNKE---MLGPYLAAKRA------AEELLRA-SGLDY--TIVRPGWL  145

Query  136  LNWRGPEVELYDEGERKFSAT-TLAGIAKGVVGIINN  171
             +       +  +GE     + + A +A  +V ++++
Sbjct  146  TDGPTTGYRVTGKGEPFKGGSISRADVADVLVALLDD  182



Lambda      K        H        a         alpha
   0.315    0.133    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00002112

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding                 88.4    8e-22
CDD:398829 pfam05368, NmrA, NmrA-like family. NmrA is a negative ...  75.8    9e-17


>CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding.  
Length=183

 Score = 88.4 bits (220),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 54/194 (28%), Positives = 83/194 (43%), Gaps = 20/194 (10%)

Query  9    GATGNLGPSVLNALLSAGFEVTVLTRAESDRSNH-NFGQARVVPVDYTSLDSLTAALKGQ  67
            GATG +G  ++  LL+ G EVT L R     ++  +     VV  D    D L  AL GQ
Sbjct  1    GATGKIGRLLVKQLLARGHEVTALVRNPEKLADLEDHPGVEVVDGDVLDPDDLAEALAGQ  60

Query  68   DVVVNTLGT--IPRDIHLRLIDAAIAAQVRRFIP-SEFGSDTTNPTAAKLPVYQDKVAIQ  124
            D V++ LG           +IDAA AA V+RF+  S  G     P        +    + 
Sbjct  61   DAVISALGGGGTDETGAKNIIDAAKAAGVKRFVLVSSLGVGDEVPGPFGPWNKE---MLG  117

Query  125  KYLQQKAAESAGSFSYTLLINGPFLDWGLTV---GFLLNWRGPEVELYDEGERKFSAT-T  180
             YL  K A      +  LL     LD+  T+   G+L +       +  +GE     + +
Sbjct  118  PYLAAKRA------AEELLRA-SGLDY--TIVRPGWLTDGPTTGYRVTGKGEPFKGGSIS  168

Query  181  LAGIAKGVVGIINN  194
             A +A  +V ++++
Sbjct  169  RADVADVLVALLDD  182


>CDD:398829 pfam05368, NmrA, NmrA-like family.  NmrA is a negative transcriptional 
regulator involved in the post-translational modification 
of the transcription factor AreA. NmrA is part of a 
system controlling nitrogen metabolite repression in fungi. 
This family only contains a few sequences as iteration results 
in significant matches to other Rossmann fold families.
Length=236

 Score = 75.8 bits (187),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 51/156 (33%), Positives = 72/156 (46%), Gaps = 17/156 (11%)

Query  5    VAIAGATGNLGPSVLNALLSAGFEVTVLTR-AESDRSN--HNFGQARVVPVDYTSLDSLT  61
            + + GATG  G SV+ A L AG +V  L R  +S+ +      G   +V  D    +SL 
Sbjct  1    ILVFGATGQQGGSVVRASLKAGHKVRALVRDPKSELAKSLKEAG-VELVKGDLDDKESLV  59

Query  62   AALKGQDVVVNTLGTIPRD---IHLRLIDAAIAAQVRRFIPSEFGS--DTTNPTAAKLPV  116
             ALKG DVV +  G           +L DAA  A V+ FIPS FG+  D +N     +P 
Sbjct  60   EALKGVDVVFSVTGFWAGKEIEDGKKLADAAKEAGVKHFIPSSFGNDNDISNGVEPAVPH  119

Query  117  YQDKVAIQKYLQQKAAESAG---SFSYTLLINGPFL  149
            +  K  I++Y+      + G   +F Y       FL
Sbjct  120  FDSKAEIERYI-----RALGIPYTFVYAGFFMQNFL  150



Lambda      K        H        a         alpha
   0.314    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00002113

Length=597


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 754686140


Query= TCONS_00002114

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463342 pfam11754, Velvet, Velvet factor. The velvet factor is...  117     8e-31


>CDD:463342 pfam11754, Velvet, Velvet factor.  The velvet factor is conserved 
in many fungal species and is found to have gained different 
roles depending on the organism's need, expanding the 
conserved role in developmental programmes. The velvet factor 
orthologues can be adapted to the fungal-specific life cycle 
and may be involved in diverse functions such as sclerotia 
formation and toxin production, as in A. parasiticus, nutrition-dependent 
sporulation, as in A. fumigatus, or the microconidia-to-macroconidia 
ratio and cell wall formation, as in 
the heterothallic fungus Fusarium verticilloides.
Length=238

 Score = 117 bits (295),  Expect = 8e-31, Method: Composition-based stats.
 Identities = 48/117 (41%), Positives = 57/117 (49%), Gaps = 23/117 (20%)

Query  12   CPVLTGVPVAGVAYLDRPQ--QAGYFIFPDLSVRHEGRYRLSFHLYEEIKDIKDADKDTP  69
               L G  VA    L  P+     +F+FPDLSVR EG +RL F L               
Sbjct  135  TRNLIGSLVASAFRLPDPEGKPGIFFVFPDLSVRTEGTFRLRFSLM--------------  180

Query  70   MPDLNSSTNLTKPSAPKAHLNFRLEVKSVPFTVYSAKKFPGLATSTSLSRIIAEQGC  126
              +L ++ N    SAP        EV S PFTVYSAKKFPG+  ST LS+  AEQG 
Sbjct  181  --NLGATVNEGGGSAP-----VLAEVFSDPFTVYSAKKFPGMPESTPLSKHFAEQGI  230



Lambda      K        H        a         alpha
   0.313    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00002115

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00007514

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00007515

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00002116

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00007517

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00007518

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00007519

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00002117

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00002118

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00007520

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462471 pfam08423, Rad51, Rad51. Rad51 is a DNA repair and rec...  65.4    1e-12


>CDD:462471 pfam08423, Rad51, Rad51.  Rad51 is a DNA repair and recombination 
protein and is a homolog of the bacterial ATPase RecA protein.
Length=255

 Score = 65.4 bits (160),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 24/81 (30%), Positives = 41/81 (51%), Gaps = 5/81 (6%)

Query  4    ESQDHILNYQLPVAITRYDVGLVVIDSITSNYRAEHTSHNVLG-LSTRSGELARLGQMLR  62
            E Q  +L  Q    ++     L+++DS T+ YR + +     G L+ R   LA+  + L+
Sbjct  115  EHQMQLLQ-QAAAMMSESRFALLIVDSATALYRTDFSG---RGELAERQQHLAKFLRTLQ  170

Query  63   NLAVAKNIAIVVANQVSDRFD  83
             LA    +A+V+ NQV  + D
Sbjct  171  RLADEFGVAVVITNQVVAQVD  191



Lambda      K        H        a         alpha
   0.313    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00007521

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00002124

Length=401


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00002119

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00002120

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462471 pfam08423, Rad51, Rad51. Rad51 is a DNA repair and rec...  132     2e-35


>CDD:462471 pfam08423, Rad51, Rad51.  Rad51 is a DNA repair and recombination 
protein and is a homolog of the bacterial ATPase RecA protein.
Length=255

 Score = 132 bits (334),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 65/183 (36%), Positives = 96/183 (52%), Gaps = 12/183 (7%)

Query  182  ISTLDPALDELLNGGLPTGYLTEVTGESGSGKTQFLLSLLLAVQLPEPRGLGKG-AIYIS  240
            I+T    LD+LL GG+ TG +TE+ GE  +GKTQ   +L +  QLP   G G+G A+YI 
Sbjct  19   ITTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYID  78

Query  241  TEAPLATSRLSQLLEYHPYLSDLPKDRAPTLDNILSINAMDLESQDHILNYQLPVAITRY  300
            TE      RL  + E   Y  D P+D    LDN+    A + E Q  +L  Q    ++  
Sbjct  79   TEGTFRPERLVAIAER--YGLD-PED---VLDNVAYARAYNSEHQMQLLQ-QAAAMMSES  131

Query  301  DVGLVVIDSITSNYRAEHTSHNVLG-LSTRSGELARLGQMLRNLAVAKNIAIVVANQVSD  359
               L+++DS T+ YR + +     G L+ R   LA+  + L+ LA    +A+V+ NQV  
Sbjct  132  RFALLIVDSATALYRTDFSG---RGELAERQQHLAKFLRTLQRLADEFGVAVVITNQVVA  188

Query  360  RFD  362
            + D
Sbjct  189  QVD  191



Lambda      K        H        a         alpha
   0.314    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 817033660


Query= TCONS_00002121

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0754    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00002122

Length=337


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00002123

Length=401


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00002125

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00007523

Length=666


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 845054670


Query= TCONS_00002126

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00007524

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 6...  205     4e-67


>CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 61.  Although 
weak endoglucanase activity has been demonstrated in several 
members of this family, they lack the clustered conserved 
catalytic acidic amino acids present in most glycoside 
hydrolases. Many members of this family lack measurable cellulase 
activity on their own, but enhance the activity of other 
cellulolytic enzymes. They are therefore unlikely to be true 
glycoside hydrolases. The subsrate-binding surface of this 
family is a flat Ig-like fold.
Length=208

 Score = 205 bits (523),  Expect = 4e-67, Method: Composition-based stats.
 Identities = 75/128 (59%), Positives = 88/128 (69%), Gaps = 6/128 (5%)

Query  1    MANCNG-DCASVDKTTLEFFKIDESGLISDSNVPGTWASDNLIANNNSWTVTVPSSIAAG  59
            +A C G DCA+VD T L +FKIDE+GL S      TWA+D LIANN +WTVT+PS +A G
Sbjct  84   LAKCPGGDCATVDGTGLVWFKIDEAGLDSGG---STWATDKLIANNGTWTVTIPSDLAPG  140

Query  60   NYVMRHEIIALHSAGNQNGAQNYPQCINLKVTGGGSDKP-AGTLGTALYKNTDAGILVNI  118
            NY++RHEIIALHSAG+  GAQ YPQC  L+VTG GS  P  G      YK TD GIL NI
Sbjct  141  NYLLRHEIIALHSAGSVGGAQFYPQCAQLEVTGSGSGTPGPGVSFPGAYKATDPGILFNI  200

Query  119  YQS-LSSY  125
            Y    +SY
Sbjct  201  YSPGPTSY  208



Lambda      K        H        a         alpha
   0.305    0.119    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00002128

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00002129

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 6...  294     2e-100


>CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 61.  Although 
weak endoglucanase activity has been demonstrated in several 
members of this family, they lack the clustered conserved 
catalytic acidic amino acids present in most glycoside 
hydrolases. Many members of this family lack measurable cellulase 
activity on their own, but enhance the activity of other 
cellulolytic enzymes. They are therefore unlikely to be true 
glycoside hydrolases. The subsrate-binding surface of this 
family is a flat Ig-like fold.
Length=208

 Score = 294 bits (755),  Expect = 2e-100, Method: Composition-based stats.
 Identities = 116/221 (52%), Positives = 136/221 (62%), Gaps = 17/221 (8%)

Query  21   GFVTGAVVDGKYYTGYLVNQYPYMSSPPDSIGWSETATDLGFVDGSGYSSGDIICHKDAK  80
            G VT  VV+G  Y GY     P        I W+   TD G V  +  +S DI C+  A 
Sbjct  1    GTVTSLVVNGVTYGGYDPVSDP-------VIRWTRPNTDNGPV--TDVTSPDIRCN-GAG  50

Query  81   NGAISAEIKAGGKVEFQWT-EWPESHHGPVITYMANCNG-DCASVDKTTLEFFKIDESGL  138
              A +A + AG  V FQWT  WPESH GPVITY+A C G DCA+VD T L +FKIDE+GL
Sbjct  51   PAATAAPVAAGSTVTFQWTQGWPESHKGPVITYLAKCPGGDCATVDGTGLVWFKIDEAGL  110

Query  139  ISDSNVPGTWASDNLIANNNSWTVTVPSSIAAGNYVMRHEIIALHSAGNQNGAQNYPQCI  198
             S      TWA+D LIANN +WTVT+PS +A GNY++RHEIIALHSAG+  GAQ YPQC 
Sbjct  111  DSGG---STWATDKLIANNGTWTVTIPSDLAPGNYLLRHEIIALHSAGSVGGAQFYPQCA  167

Query  199  NLKVTGGGSDKP-AGTLGTALYKNTDAGILVNIYQS-LSSY  237
             L+VTG GS  P  G      YK TD GIL NIY    +SY
Sbjct  168  QLEVTGSGSGTPGPGVSFPGAYKATDPGILFNIYSPGPTSY  208



Lambda      K        H        a         alpha
   0.308    0.123    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00002130

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 6...  205     4e-67


>CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 61.  Although 
weak endoglucanase activity has been demonstrated in several 
members of this family, they lack the clustered conserved 
catalytic acidic amino acids present in most glycoside 
hydrolases. Many members of this family lack measurable cellulase 
activity on their own, but enhance the activity of other 
cellulolytic enzymes. They are therefore unlikely to be true 
glycoside hydrolases. The subsrate-binding surface of this 
family is a flat Ig-like fold.
Length=208

 Score = 205 bits (523),  Expect = 4e-67, Method: Composition-based stats.
 Identities = 75/128 (59%), Positives = 88/128 (69%), Gaps = 6/128 (5%)

Query  1    MANCNG-DCASVDKTTLEFFKIDESGLISDSNVPGTWASDNLIANNNSWTVTVPSSIAAG  59
            +A C G DCA+VD T L +FKIDE+GL S      TWA+D LIANN +WTVT+PS +A G
Sbjct  84   LAKCPGGDCATVDGTGLVWFKIDEAGLDSGG---STWATDKLIANNGTWTVTIPSDLAPG  140

Query  60   NYVMRHEIIALHSAGNQNGAQNYPQCINLKVTGGGSDKP-AGTLGTALYKNTDAGILVNI  118
            NY++RHEIIALHSAG+  GAQ YPQC  L+VTG GS  P  G      YK TD GIL NI
Sbjct  141  NYLLRHEIIALHSAGSVGGAQFYPQCAQLEVTGSGSGTPGPGVSFPGAYKATDPGILFNI  200

Query  119  YQS-LSSY  125
            Y    +SY
Sbjct  201  YSPGPTSY  208



Lambda      K        H        a         alpha
   0.305    0.119    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00007525

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460137 pfam01253, SUI1, Translation initiation factor SUI1        93.3    6e-24


>CDD:460137 pfam01253, SUI1, Translation initiation factor SUI1.  
Length=75

 Score = 93.3 bits (233),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 35/78 (45%), Positives = 47/78 (60%), Gaps = 4/78 (5%)

Query  423  PKINLVLEKRTGSKTVTKVSNLEIFGIVPSLLAEELQKKCASSTSVAQATGATKGVMEVL  482
            PKI++ +E+R G KTVT VS LE FGI    LA+EL+KK A   +V +      G  E+ 
Sbjct  2    PKIHIRVEQRGGRKTVTTVSGLEPFGIDLKKLAKELKKKFACGGTVVK----DGGGEEIQ  57

Query  483  IQGDQRKAVETALLRRGV  500
            +QGDQR  V   L  +G+
Sbjct  58   VQGDQRDKVAELLTEKGI  75



Lambda      K        H        a         alpha
   0.311    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00007526

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436077 pfam17832, Pre-PUA, Pre-PUA-like domain. This Pre-PUA-...  62.2    4e-13


>CDD:436077 pfam17832, Pre-PUA, Pre-PUA-like domain.  This Pre-PUA-like domain 
is found in a wide variety of proteins including the eukaryotic 
translation initiation factor 2D, where it is found 
at the N-terminus.
Length=86

 Score = 62.2 bits (152),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 31/126 (25%), Positives = 48/126 (38%), Gaps = 40/126 (32%)

Query  2    FKKKPTIKNLAPLRSSDRRKIADQIISDYNISIPSAAPAEDDSNTPTTSNQTSPSITAIR  61
            FKK   +K+   L+SSDRRK+  +++  +                        PS+    
Sbjct  1    FKKPFKVKSNTQLKSSDRRKLRAKLLEQF------------------------PSLEEQL  36

Query  62   NSLLPENSLSARFTTTAGPQLREVQGTVYVGTHPEGEERILWFKVEHGPGADGRFYPTVY  121
            + LLP+                    ++Y     +GE   L+F+V      DG  YPT+Y
Sbjct  37   DELLPKKEEVIVIKLHTE------HVSLYS---VDGE--PLFFQVR-----DGPLYPTLY  80

Query  122  TLWHNP  127
             LW  P
Sbjct  81   LLWKYP  86



Lambda      K        H        a         alpha
   0.313    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00002131

Length=652
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460137 pfam01253, SUI1, Translation initiation factor SUI1        94.8    3e-24
CDD:436077 pfam17832, Pre-PUA, Pre-PUA-like domain. This Pre-PUA-...  59.5    1e-11


>CDD:460137 pfam01253, SUI1, Translation initiation factor SUI1.  
Length=75

 Score = 94.8 bits (237),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 35/78 (45%), Positives = 47/78 (60%), Gaps = 4/78 (5%)

Query  560  PKINLVLEKRTGSKTVTKVSNLEIFGIVPSLLAEELQKKCASSTSVAQATGATKGVMEVL  619
            PKI++ +E+R G KTVT VS LE FGI    LA+EL+KK A   +V +      G  E+ 
Sbjct  2    PKIHIRVEQRGGRKTVTTVSGLEPFGIDLKKLAKELKKKFACGGTVVK----DGGGEEIQ  57

Query  620  IQGDQRKAVETALLRRGV  637
            +QGDQR  V   L  +G+
Sbjct  58   VQGDQRDKVAELLTEKGI  75


>CDD:436077 pfam17832, Pre-PUA, Pre-PUA-like domain.  This Pre-PUA-like domain 
is found in a wide variety of proteins including the eukaryotic 
translation initiation factor 2D, where it is found 
at the N-terminus.
Length=86

 Score = 59.5 bits (145),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/126 (25%), Positives = 48/126 (38%), Gaps = 40/126 (32%)

Query  2    FKKKPTIKNLAPLRSSDRRKIADQIISDYNISIPSAAPAEDDSNTPTTSNQTSPSITAIR  61
            FKK   +K+   L+SSDRRK+  +++  +                        PS+    
Sbjct  1    FKKPFKVKSNTQLKSSDRRKLRAKLLEQF------------------------PSLEEQL  36

Query  62   NSLLPENSLSARFTTTAGPQLREVQGTVYVGTHPEGEERILWFKVEHGPGADGRFYPTVY  121
            + LLP+                    ++Y     +GE   L+F+V      DG  YPT+Y
Sbjct  37   DELLPKKEEVIVIKLHTE------HVSLYS---VDGE--PLFFQVR-----DGPLYPTLY  80

Query  122  TLWHNP  127
             LW  P
Sbjct  81   LLWKYP  86



Lambda      K        H        a         alpha
   0.312    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00002132

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460137 pfam01253, SUI1, Translation initiation factor SUI1        90.2    1e-23


>CDD:460137 pfam01253, SUI1, Translation initiation factor SUI1.  
Length=75

 Score = 90.2 bits (225),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 35/78 (45%), Positives = 47/78 (60%), Gaps = 4/78 (5%)

Query  227  PKINLVLEKRTGSKTVTKVSNLEIFGIVPSLLAEELQKKCASSTSVAQATGATKGVMEVL  286
            PKI++ +E+R G KTVT VS LE FGI    LA+EL+KK A   +V +      G  E+ 
Sbjct  2    PKIHIRVEQRGGRKTVTTVSGLEPFGIDLKKLAKELKKKFACGGTVVK----DGGGEEIQ  57

Query  287  IQGDQRKAVETALLRRGV  304
            +QGDQR  V   L  +G+
Sbjct  58   VQGDQRDKVAELLTEKGI  75



Lambda      K        H        a         alpha
   0.312    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00002133

Length=359
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461635 pfam05383, La, La domain. This presumed domain is foun...  92.9    2e-24


>CDD:461635 pfam05383, La, La domain.  This presumed domain is found at the 
N-terminus of La RNA-binding proteins as well as other proteins. 
The function of this region is uncertain.
Length=59

 Score = 92.9 bits (232),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 27/59 (46%), Positives = 38/59 (64%), Gaps = 1/59 (2%)

Query  114  IRKQVEFYFSDSNLPMDKFLLSKVGGSSNRPVPLELLHSFKRMRRFQP-FSAIVEALKS  171
            I+KQVE+YFSD NLP DKFL  ++    +  VP+ ++ SFKRM++       I EAL+ 
Sbjct  1    IKKQVEYYFSDENLPKDKFLRKQMDKDPDGYVPISVIASFKRMKKLTTDIDLIAEALRE  59



Lambda      K        H        a         alpha
   0.311    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00007527

Length=789
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  82.9    5e-17
CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase famil...  60.8    4e-11


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 82.9 bits (205),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 88/320 (28%), Positives = 135/320 (42%), Gaps = 49/320 (15%)

Query  247  VYADYLERHDNLFVLFIDSDCILDRVCLQNFMYDMELKPGSKHDMLAMTGVITSTTDRGS  306
            V  D+ E     +VL +D+D  +    L   +  M   P    +++ + G       R S
Sbjct  197  VSPDFYE-----YVLMVDADTKVFPDSLTRMVACMVDDP----EIMGLCGETKIANKRQS  247

Query  307  LLTLLQDMEYVHGQLFERSVESSCGAVTCLPGALTMLRFSAFRKMAKYY---FADK---A  360
             +T +Q  EY       ++ ES  G VTCLPG  +M R  A +    Y+    A      
Sbjct  248  WVTAIQVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKGGDGYWVPILASPDIVE  307

Query  361  EQCEDFFD--YGK--CHLGEDRWLTHLFMVGARKRYQIQMCAGAFCKTEAVQTFSSLLKQ  416
               E+  D  + K    LGEDR+LT L +    KR  +     A CKT A  TF  LL Q
Sbjct  308  HYSENVVDTLHKKNLLLLGEDRYLTTLMLKTFPKRKTV-FVPQAVCKTIAPDTFKVLLSQ  366

Query  417  RRRWFLGFITN--EVCMLTDVRLWKRYPLLC--------LVRFMQ--NTI---RTTALLF  461
            RRRW    + N  E+ ++ D         LC         V F++   T+      A   
Sbjct  367  RRRWINSTVHNLMELVLVRD---------LCGTFCFSMQFVVFIELIGTVVLPAAIAFTV  417

Query  462  FIIALSLITTSSSINDLPVGFIAISLGLNYVLMFYLGAKLKRYKAWLFPLMFILN-PFFN  520
            ++I +S I T   +  +P+  +A  LGL  +L   L  +   Y  W+  L+++L  P +N
Sbjct  418  YLIVIS-ILTPDPVPVIPLVLLAAILGLPAIL-ILLTTRKWVYIGWM--LVYLLALPIWN  473

Query  521  WLYMVYGILTAGQRTWGGPR  540
            ++  +Y        +WG  R
Sbjct  474  FVLPLYAFWHFDDFSWGNTR  493


>CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 
2.  Members of this family of prokaryotic proteins include 
putative glucosyltransferases, which are involved in bacterial 
capsule biosynthesis.
Length=192

 Score = 60.8 bits (148),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 40/213 (19%), Positives = 80/213 (38%), Gaps = 30/213 (14%)

Query  259  FVLFIDSDCILDRVCLQNFMYDMELKPGSKHDMLAMTGVITSTTDRGSLLTLLQDMEYVH  318
            ++L +D+D +L   CL     +M        ++  + G I    + G+ L  L  + +  
Sbjct  1    WILLLDADTVLPPDCLLGIANEMAS-----PEVAIIQGPILPM-NVGNYLEELAALFFAD  54

Query  319  GQLFERSVESSCGAVTCLPGALTMLRFSAFRKMAKYYFADKAEQCEDFFDYGKCHLGEDR  378
                   V  + G V    G+   LR SA +++               +D G   + ED 
Sbjct  55   DHGKSIPVRMALGRVLPFVGSGAFLRRSALQEVG-------------GWDDG--SVSED-  98

Query  379  WLTHLFMVGARKRYQIQMCAGAFCKTEAVQTFSSLLKQRRRWFLGFITNEVCMLTDVRLW  438
                  +   R  Y+++    +    ++  TF   L+QRRRW  G +   + +L  +  +
Sbjct  99   --FDFGLRLQRAGYRVRFAPYSAVYEKSPLTFRDFLRQRRRWAYGCL---LILLIRLLGY  153

Query  439  KRYPLLCLVRF---MQNTIRTTALLFFIIALSL  468
                L   +     +      ++L   ++ L+L
Sbjct  154  LGTLLWSGLPLALLLLLLFSISSLALVLLLLAL  186



Lambda      K        H        a         alpha
   0.324    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1011330640


Query= TCONS_00002134

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00002135

Length=735


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 932752432


Query= TCONS_00002136

Length=789
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  82.9    5e-17
CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase famil...  60.8    4e-11


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 82.9 bits (205),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 88/320 (28%), Positives = 135/320 (42%), Gaps = 49/320 (15%)

Query  247  VYADYLERHDNLFVLFIDSDCILDRVCLQNFMYDMELKPGSKHDMLAMTGVITSTTDRGS  306
            V  D+ E     +VL +D+D  +    L   +  M   P    +++ + G       R S
Sbjct  197  VSPDFYE-----YVLMVDADTKVFPDSLTRMVACMVDDP----EIMGLCGETKIANKRQS  247

Query  307  LLTLLQDMEYVHGQLFERSVESSCGAVTCLPGALTMLRFSAFRKMAKYY---FADK---A  360
             +T +Q  EY       ++ ES  G VTCLPG  +M R  A +    Y+    A      
Sbjct  248  WVTAIQVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKGGDGYWVPILASPDIVE  307

Query  361  EQCEDFFD--YGK--CHLGEDRWLTHLFMVGARKRYQIQMCAGAFCKTEAVQTFSSLLKQ  416
               E+  D  + K    LGEDR+LT L +    KR  +     A CKT A  TF  LL Q
Sbjct  308  HYSENVVDTLHKKNLLLLGEDRYLTTLMLKTFPKRKTV-FVPQAVCKTIAPDTFKVLLSQ  366

Query  417  RRRWFLGFITN--EVCMLTDVRLWKRYPLLC--------LVRFMQ--NTI---RTTALLF  461
            RRRW    + N  E+ ++ D         LC         V F++   T+      A   
Sbjct  367  RRRWINSTVHNLMELVLVRD---------LCGTFCFSMQFVVFIELIGTVVLPAAIAFTV  417

Query  462  FIIALSLITTSSSINDLPVGFIAISLGLNYVLMFYLGAKLKRYKAWLFPLMFILN-PFFN  520
            ++I +S I T   +  +P+  +A  LGL  +L   L  +   Y  W+  L+++L  P +N
Sbjct  418  YLIVIS-ILTPDPVPVIPLVLLAAILGLPAIL-ILLTTRKWVYIGWM--LVYLLALPIWN  473

Query  521  WLYMVYGILTAGQRTWGGPR  540
            ++  +Y        +WG  R
Sbjct  474  FVLPLYAFWHFDDFSWGNTR  493


>CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 
2.  Members of this family of prokaryotic proteins include 
putative glucosyltransferases, which are involved in bacterial 
capsule biosynthesis.
Length=192

 Score = 60.8 bits (148),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 40/213 (19%), Positives = 80/213 (38%), Gaps = 30/213 (14%)

Query  259  FVLFIDSDCILDRVCLQNFMYDMELKPGSKHDMLAMTGVITSTTDRGSLLTLLQDMEYVH  318
            ++L +D+D +L   CL     +M        ++  + G I    + G+ L  L  + +  
Sbjct  1    WILLLDADTVLPPDCLLGIANEMAS-----PEVAIIQGPILPM-NVGNYLEELAALFFAD  54

Query  319  GQLFERSVESSCGAVTCLPGALTMLRFSAFRKMAKYYFADKAEQCEDFFDYGKCHLGEDR  378
                   V  + G V    G+   LR SA +++               +D G   + ED 
Sbjct  55   DHGKSIPVRMALGRVLPFVGSGAFLRRSALQEVG-------------GWDDG--SVSED-  98

Query  379  WLTHLFMVGARKRYQIQMCAGAFCKTEAVQTFSSLLKQRRRWFLGFITNEVCMLTDVRLW  438
                  +   R  Y+++    +    ++  TF   L+QRRRW  G +   + +L  +  +
Sbjct  99   --FDFGLRLQRAGYRVRFAPYSAVYEKSPLTFRDFLRQRRRWAYGCL---LILLIRLLGY  153

Query  439  KRYPLLCLVRF---MQNTIRTTALLFFIIALSL  468
                L   +     +      ++L   ++ L+L
Sbjct  154  LGTLLWSGLPLALLLLLLFSISSLALVLLLLAL  186



Lambda      K        H        a         alpha
   0.324    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1011330640


Query= TCONS_00002137

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.146    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00002138

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00007528

Length=671


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 852428620


Query= TCONS_00002139

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00002140

Length=714
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  527     0.0  


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 527 bits (1361),  Expect = 0.0, Method: Composition-based stats.
 Identities = 220/657 (33%), Positives = 327/657 (50%), Gaps = 69/657 (11%)

Query  3    VVGIDFGAQSTKVGVARNKGIDIITNEVSNRSTPTLVGFGTRSRHIGEGAKTQEMSNLKN  62
            V+GID G  ++ V V    G ++I N   NR+TP++V F  + R +G+ AK Q ++N KN
Sbjct  1    VIGIDLGTTNSCVAVMEGGGPEVIANAEGNRTTPSVVAFTPKERLVGQAAKNQAVTNPKN  60

Query  63   TVGNLKRLIGRSFNDPDVEIEQKYTSAAIC-DVNGQAGVEVSYLGKKEKFSATQLAAMYL  121
            TV ++KRLIGR F+DP V+ + K+    +    NG AGVEV YLG  E F+  Q++AM L
Sbjct  61   TVFSVKRLIGRKFSDPVVQRDIKHLPYKVVKLPNGDAGVEVRYLG--ETFTPEQISAMIL  118

Query  122  TKIRDITSKELKLPVSDVTISVPAWFTDAQRRAMIDAGEIAGLKVLRLINDTTATALGYG  181
             K+++     L  PV+D  I+VPA+F DAQR+A  DAG+IAGL VLR++N+ TA AL YG
Sbjct  119  QKLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGQIAGLNVLRIVNEPTAAALAYG  178

Query  182  ITKLDLPGPEEKPRRVMFVDIGHSDYTASVVEFRKGELNVKATAYDRHFGGRDFDIALTE  241
            + K D      K R +   D+G   +  S++E  +G   VKAT  D H GG DFD+ L +
Sbjct  179  LDKTD------KERNIAVYDLGGGTFDVSILEIGRGVFEVKATNGDTHLGGEDFDLRLVD  232

Query  242  HFADEFKEKFKIDVRSNPKAYARTVAAAEKMKKVLSANPA-APMSIESLMED-VDVRSIV  299
            H A+EFK+K+ ID+  + +A  R   AAEK K  LS+N     +   + M D  DV   +
Sbjct  233  HLAEEFKKKYGIDLSKDKRALQRLREAAEKAKIELSSNQTNINLPFITAMADGKDVSGTL  292

Query  300  KREELETMVKPLLERVTIPIEEALAEAKLKPEDIDTIEMVGGCTRVPAIKEAISKFFGKT  359
             R + E +V  L ER   P+E+AL +A L   +ID + +VGG TR+PA++E + +FFGK 
Sbjct  293  TRAKFEELVADLFERTLEPVEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKE  352

Query  360  LSFTLNQDEAIARGCAFSCAILSPVFRVRDFSVHDIV--NYPIEFTWE-QSADIPDEDTS  416
             S  +N DEA+A G A    +LS  F V+DF + D+   +  IE      +  IP   T 
Sbjct  353  PSKGVNPDEAVAIGAAVQAGVLSGTFDVKDFLLLDVTPLSLGIETLGGVMTKLIPRNTTI  412

Query  417  LTVFNRGNVMPSTKILTFYRKQPFDLEARYAKPDMLPGKINPWIGRFSVKGVKADANDDF  476
             T                 +    +++    + +M P   N  +G F + G+        
Sbjct  413  PT-----KKSQIFSTAADNQT-AVEIQVYQGEREMAPD--NKLLGSFELDGIPPAPRGVP  464

Query  477  MICKLKARLNLHGILNVESGYYVEDVEVEEPVDEDKMDTDAPEGEQPKKTRKVKKQVRKG  536
             I ++   ++ +GIL V +                            K T K ++     
Sbjct  465  QI-EVTFDIDANGILTVSAKD--------------------------KGTGKEQE-----  492

Query  537  DLPISTGTNSVDQTVKETWIER----ENAMYMEDKLIAETDEKKNELESTIYELRDKIDG  592
             + I     S   +  E  IER          EDK   E  E KNE E  +Y L   ++ 
Sbjct  493  -ITI---EASEGLSDDE--IERMVKDAEEYAEEDKKRKERIEAKNEAEEYVYSLEKSLEE  546

Query  593  VYAEFASEEEKDKLRAKLTDMEDWLYEEGEDTTKSVYVAKLDEIRFIAGPIVQRYKE  649
               +   E EK K+ +      +WL +E E   K    AK +E+  ++  I +R  +
Sbjct  547  -EGDKVPEAEKSKVESA----IEWLKDELEGDDKEEIEAKTEELAQVSQKIGERMYQ  598



Lambda      K        H        a         alpha
   0.313    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 902194240


Query= TCONS_00007529

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  519     1e-178


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 519 bits (1338),  Expect = 1e-178, Method: Composition-based stats.
 Identities = 210/622 (34%), Positives = 312/622 (50%), Gaps = 65/622 (10%)

Query  3    VVGIDFGAQSTKVGVARNKGIDIITNEVSNRSTPTLVGFGTRSRHIGEGAKTQEMSNLKN  62
            V+GID G  ++ V V    G ++I N   NR+TP++V F  + R +G+ AK Q ++N KN
Sbjct  1    VIGIDLGTTNSCVAVMEGGGPEVIANAEGNRTTPSVVAFTPKERLVGQAAKNQAVTNPKN  60

Query  63   TVGNLKRLIGRSFNDPDVEIEQKYTSAAIC-DVNGQAGVEVSYLGKKEKFSATQLAAMYL  121
            TV ++KRLIGR F+DP V+ + K+    +    NG AGVEV YLG  E F+  Q++AM L
Sbjct  61   TVFSVKRLIGRKFSDPVVQRDIKHLPYKVVKLPNGDAGVEVRYLG--ETFTPEQISAMIL  118

Query  122  TKIRDITSKELKLPVSDVTISVPAWFTDAQRRAMIDAGEIAGLKVLRLINDTTATALGYG  181
             K+++     L  PV+D  I+VPA+F DAQR+A  DAG+IAGL VLR++N+ TA AL YG
Sbjct  119  QKLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGQIAGLNVLRIVNEPTAAALAYG  178

Query  182  ITKLDLPGPEEKPRRVMFVDIGHSDYTASVVEFRKGELNVKATAYDRHFGGRDFDIALTE  241
            + K D      K R +   D+G   +  S++E  +G   VKAT  D H GG DFD+ L +
Sbjct  179  LDKTD------KERNIAVYDLGGGTFDVSILEIGRGVFEVKATNGDTHLGGEDFDLRLVD  232

Query  242  HFADEFKEKFKIDVRSNPKAYARTVAAAEKMKKVLSANPA-APMSIESLMED-VDVRSIV  299
            H A+EFK+K+ ID+  + +A  R   AAEK K  LS+N     +   + M D  DV   +
Sbjct  233  HLAEEFKKKYGIDLSKDKRALQRLREAAEKAKIELSSNQTNINLPFITAMADGKDVSGTL  292

Query  300  KREELETMVKPLLERVTIPIEEALAEAKLKPEDIDTIEMVGGCTRVPAIKEAISKFFGKT  359
             R + E +V  L ER   P+E+AL +A L   +ID + +VGG TR+PA++E + +FFGK 
Sbjct  293  TRAKFEELVADLFERTLEPVEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKE  352

Query  360  LSFTLNQDEAIARGCAFSCAILSPVFRVRDFSVHDIV--NYPIEFTWE-QSADIPDEDTS  416
             S  +N DEA+A G A    +LS  F V+DF + D+   +  IE      +  IP   T 
Sbjct  353  PSKGVNPDEAVAIGAAVQAGVLSGTFDVKDFLLLDVTPLSLGIETLGGVMTKLIPRNTTI  412

Query  417  LTVFNRGNVMPSTKILTFYRKQPFDLEARYAKPDMLPGKINPWIGRFSVKGVKADANDDF  476
             T                 +    +++    + +M P   N  +G F + G+        
Sbjct  413  PT-----KKSQIFSTAADNQT-AVEIQVYQGEREMAPD--NKLLGSFELDGIPPAPRGVP  464

Query  477  MICKLKARLNLHGILNVESGYYVEDVEVEEPVDEDKMDTDAPEGEQPKKTRKVKKQVRKG  536
             I ++   ++ +GIL V +                            K T K ++     
Sbjct  465  QI-EVTFDIDANGILTVSAKD--------------------------KGTGKEQE-----  492

Query  537  DLPISTGTNSVDQTVKETWIER----ENAMYMEDKLIAETDEKKNELESTIYELRDKIDG  592
             + I     S   +  E  IER          EDK   E  E KNE E  +Y L   ++ 
Sbjct  493  -ITI---EASEGLSDDE--IERMVKDAEEYAEEDKKRKERIEAKNEAEEYVYSLEKSLEE  546

Query  593  VYAEFASEEEKDKLRAKLTDME  614
               +   E EK K+ + +  ++
Sbjct  547  -EGDKVPEAEKSKVESAIEWLK  567



Lambda      K        H        a         alpha
   0.316    0.133    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 827357190


Query= TCONS_00002141

Length=714
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  527     0.0  


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 527 bits (1361),  Expect = 0.0, Method: Composition-based stats.
 Identities = 220/657 (33%), Positives = 327/657 (50%), Gaps = 69/657 (11%)

Query  3    VVGIDFGAQSTKVGVARNKGIDIITNEVSNRSTPTLVGFGTRSRHIGEGAKTQEMSNLKN  62
            V+GID G  ++ V V    G ++I N   NR+TP++V F  + R +G+ AK Q ++N KN
Sbjct  1    VIGIDLGTTNSCVAVMEGGGPEVIANAEGNRTTPSVVAFTPKERLVGQAAKNQAVTNPKN  60

Query  63   TVGNLKRLIGRSFNDPDVEIEQKYTSAAIC-DVNGQAGVEVSYLGKKEKFSATQLAAMYL  121
            TV ++KRLIGR F+DP V+ + K+    +    NG AGVEV YLG  E F+  Q++AM L
Sbjct  61   TVFSVKRLIGRKFSDPVVQRDIKHLPYKVVKLPNGDAGVEVRYLG--ETFTPEQISAMIL  118

Query  122  TKIRDITSKELKLPVSDVTISVPAWFTDAQRRAMIDAGEIAGLKVLRLINDTTATALGYG  181
             K+++     L  PV+D  I+VPA+F DAQR+A  DAG+IAGL VLR++N+ TA AL YG
Sbjct  119  QKLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGQIAGLNVLRIVNEPTAAALAYG  178

Query  182  ITKLDLPGPEEKPRRVMFVDIGHSDYTASVVEFRKGELNVKATAYDRHFGGRDFDIALTE  241
            + K D      K R +   D+G   +  S++E  +G   VKAT  D H GG DFD+ L +
Sbjct  179  LDKTD------KERNIAVYDLGGGTFDVSILEIGRGVFEVKATNGDTHLGGEDFDLRLVD  232

Query  242  HFADEFKEKFKIDVRSNPKAYARTVAAAEKMKKVLSANPA-APMSIESLMED-VDVRSIV  299
            H A+EFK+K+ ID+  + +A  R   AAEK K  LS+N     +   + M D  DV   +
Sbjct  233  HLAEEFKKKYGIDLSKDKRALQRLREAAEKAKIELSSNQTNINLPFITAMADGKDVSGTL  292

Query  300  KREELETMVKPLLERVTIPIEEALAEAKLKPEDIDTIEMVGGCTRVPAIKEAISKFFGKT  359
             R + E +V  L ER   P+E+AL +A L   +ID + +VGG TR+PA++E + +FFGK 
Sbjct  293  TRAKFEELVADLFERTLEPVEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKE  352

Query  360  LSFTLNQDEAIARGCAFSCAILSPVFRVRDFSVHDIV--NYPIEFTWE-QSADIPDEDTS  416
             S  +N DEA+A G A    +LS  F V+DF + D+   +  IE      +  IP   T 
Sbjct  353  PSKGVNPDEAVAIGAAVQAGVLSGTFDVKDFLLLDVTPLSLGIETLGGVMTKLIPRNTTI  412

Query  417  LTVFNRGNVMPSTKILTFYRKQPFDLEARYAKPDMLPGKINPWIGRFSVKGVKADANDDF  476
             T                 +    +++    + +M P   N  +G F + G+        
Sbjct  413  PT-----KKSQIFSTAADNQT-AVEIQVYQGEREMAPD--NKLLGSFELDGIPPAPRGVP  464

Query  477  MICKLKARLNLHGILNVESGYYVEDVEVEEPVDEDKMDTDAPEGEQPKKTRKVKKQVRKG  536
             I ++   ++ +GIL V +                            K T K ++     
Sbjct  465  QI-EVTFDIDANGILTVSAKD--------------------------KGTGKEQE-----  492

Query  537  DLPISTGTNSVDQTVKETWIER----ENAMYMEDKLIAETDEKKNELESTIYELRDKIDG  592
             + I     S   +  E  IER          EDK   E  E KNE E  +Y L   ++ 
Sbjct  493  -ITI---EASEGLSDDE--IERMVKDAEEYAEEDKKRKERIEAKNEAEEYVYSLEKSLEE  546

Query  593  VYAEFASEEEKDKLRAKLTDMEDWLYEEGEDTTKSVYVAKLDEIRFIAGPIVQRYKE  649
               +   E EK K+ +      +WL +E E   K    AK +E+  ++  I +R  +
Sbjct  547  -EGDKVPEAEKSKVESA----IEWLKDELEGDDKEEIEAKTEELAQVSQKIGERMYQ  598



Lambda      K        H        a         alpha
   0.313    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 902194240


Query= TCONS_00002142

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  455     6e-155


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 455 bits (1174),  Expect = 6e-155, Method: Composition-based stats.
 Identities = 189/567 (33%), Positives = 279/567 (49%), Gaps = 65/567 (11%)

Query  2    SNLKNTVGNLKRLIGRSFNDPDVEIEQKYTSAAIC-DVNGQAGVEVSYLGKKEKFSATQL  60
            +N KNTV ++KRLIGR F+DP V+ + K+    +    NG AGVEV YLG  E F+  Q+
Sbjct  56   TNPKNTVFSVKRLIGRKFSDPVVQRDIKHLPYKVVKLPNGDAGVEVRYLG--ETFTPEQI  113

Query  61   AAMYLTKIRDITSKELKLPVSDVTISVPAWFTDAQRRAMIDAGEIAGLKVLRLINDTTAT  120
            +AM L K+++     L  PV+D  I+VPA+F DAQR+A  DAG+IAGL VLR++N+ TA 
Sbjct  114  SAMILQKLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGQIAGLNVLRIVNEPTAA  173

Query  121  ALGYGITKLDLPGPEEKPRRVMFVDIGHSDYTASVVEFRKGELNVKATAYDRHFGGRDFD  180
            AL YG+ K D      K R +   D+G   +  S++E  +G   VKAT  D H GG DFD
Sbjct  174  ALAYGLDKTD------KERNIAVYDLGGGTFDVSILEIGRGVFEVKATNGDTHLGGEDFD  227

Query  181  IALTEHFADEFKEKFKIDVRSNPKAYARTVAAAEKMKKVLSANPA-APMSIESLMED-VD  238
            + L +H A+EFK+K+ ID+  + +A  R   AAEK K  LS+N     +   + M D  D
Sbjct  228  LRLVDHLAEEFKKKYGIDLSKDKRALQRLREAAEKAKIELSSNQTNINLPFITAMADGKD  287

Query  239  VRSIVKREELETMVKPLLERVTIPIEEALAEAKLKPEDIDTIEMVGGCTRVPAIKEAISK  298
            V   + R + E +V  L ER   P+E+AL +A L   +ID + +VGG TR+PA++E + +
Sbjct  288  VSGTLTRAKFEELVADLFERTLEPVEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKE  347

Query  299  FFGKTLSFTLNQDEAIARGCAFSCAILSPVFRVRDFSVHDIV--NYPIEFTWE-QSADIP  355
            FFGK  S  +N DEA+A G A    +LS  F V+DF + D+   +  IE      +  IP
Sbjct  348  FFGKEPSKGVNPDEAVAIGAAVQAGVLSGTFDVKDFLLLDVTPLSLGIETLGGVMTKLIP  407

Query  356  DEDTSLTVFNRGNVMPSTKILTFYRKQPFDLEARYAKPDMLPGKINPWIGRFSVKGVKAD  415
               T  T                 +    +++    + +M P   N  +G F + G+   
Sbjct  408  RNTTIPT-----KKSQIFSTAADNQT-AVEIQVYQGEREMAPD--NKLLGSFELDGIPPA  459

Query  416  ANDDFMICKLKARLNLHGILNVESGYYVEDVEVEEPVDEDKMDTDAPEGEQPKKTRKVKK  475
                  I ++   ++ +GIL V +                            K T K ++
Sbjct  460  PRGVPQI-EVTFDIDANGILTVSAKD--------------------------KGTGKEQE  492

Query  476  QVRKGDLPISTGTNSVDQTVKETWIER----ENAMYMEDKLIAETDEKKNELESTIYELR  531
                  + I     S   +  E  IER          EDK   E  E KNE E  +Y L 
Sbjct  493  ------ITI---EASEGLSDDE--IERMVKDAEEYAEEDKKRKERIEAKNEAEEYVYSLE  541

Query  532  DKIDGVYAEFASEEEKDKLRAKLTDME  558
              ++    +   E EK K+ + +  ++
Sbjct  542  KSLEE-EGDKVPEAEKSKVESAIEWLK  567



Lambda      K        H        a         alpha
   0.316    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0754    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00002144

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  519     1e-178


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 519 bits (1338),  Expect = 1e-178, Method: Composition-based stats.
 Identities = 210/622 (34%), Positives = 312/622 (50%), Gaps = 65/622 (10%)

Query  3    VVGIDFGAQSTKVGVARNKGIDIITNEVSNRSTPTLVGFGTRSRHIGEGAKTQEMSNLKN  62
            V+GID G  ++ V V    G ++I N   NR+TP++V F  + R +G+ AK Q ++N KN
Sbjct  1    VIGIDLGTTNSCVAVMEGGGPEVIANAEGNRTTPSVVAFTPKERLVGQAAKNQAVTNPKN  60

Query  63   TVGNLKRLIGRSFNDPDVEIEQKYTSAAIC-DVNGQAGVEVSYLGKKEKFSATQLAAMYL  121
            TV ++KRLIGR F+DP V+ + K+    +    NG AGVEV YLG  E F+  Q++AM L
Sbjct  61   TVFSVKRLIGRKFSDPVVQRDIKHLPYKVVKLPNGDAGVEVRYLG--ETFTPEQISAMIL  118

Query  122  TKIRDITSKELKLPVSDVTISVPAWFTDAQRRAMIDAGEIAGLKVLRLINDTTATALGYG  181
             K+++     L  PV+D  I+VPA+F DAQR+A  DAG+IAGL VLR++N+ TA AL YG
Sbjct  119  QKLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGQIAGLNVLRIVNEPTAAALAYG  178

Query  182  ITKLDLPGPEEKPRRVMFVDIGHSDYTASVVEFRKGELNVKATAYDRHFGGRDFDIALTE  241
            + K D      K R +   D+G   +  S++E  +G   VKAT  D H GG DFD+ L +
Sbjct  179  LDKTD------KERNIAVYDLGGGTFDVSILEIGRGVFEVKATNGDTHLGGEDFDLRLVD  232

Query  242  HFADEFKEKFKIDVRSNPKAYARTVAAAEKMKKVLSANPA-APMSIESLMED-VDVRSIV  299
            H A+EFK+K+ ID+  + +A  R   AAEK K  LS+N     +   + M D  DV   +
Sbjct  233  HLAEEFKKKYGIDLSKDKRALQRLREAAEKAKIELSSNQTNINLPFITAMADGKDVSGTL  292

Query  300  KREELETMVKPLLERVTIPIEEALAEAKLKPEDIDTIEMVGGCTRVPAIKEAISKFFGKT  359
             R + E +V  L ER   P+E+AL +A L   +ID + +VGG TR+PA++E + +FFGK 
Sbjct  293  TRAKFEELVADLFERTLEPVEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKE  352

Query  360  LSFTLNQDEAIARGCAFSCAILSPVFRVRDFSVHDIV--NYPIEFTWE-QSADIPDEDTS  416
             S  +N DEA+A G A    +LS  F V+DF + D+   +  IE      +  IP   T 
Sbjct  353  PSKGVNPDEAVAIGAAVQAGVLSGTFDVKDFLLLDVTPLSLGIETLGGVMTKLIPRNTTI  412

Query  417  LTVFNRGNVMPSTKILTFYRKQPFDLEARYAKPDMLPGKINPWIGRFSVKGVKADANDDF  476
             T                 +    +++    + +M P   N  +G F + G+        
Sbjct  413  PT-----KKSQIFSTAADNQT-AVEIQVYQGEREMAPD--NKLLGSFELDGIPPAPRGVP  464

Query  477  MICKLKARLNLHGILNVESGYYVEDVEVEEPVDEDKMDTDAPEGEQPKKTRKVKKQVRKG  536
             I ++   ++ +GIL V +                            K T K ++     
Sbjct  465  QI-EVTFDIDANGILTVSAKD--------------------------KGTGKEQE-----  492

Query  537  DLPISTGTNSVDQTVKETWIER----ENAMYMEDKLIAETDEKKNELESTIYELRDKIDG  592
             + I     S   +  E  IER          EDK   E  E KNE E  +Y L   ++ 
Sbjct  493  -ITI---EASEGLSDDE--IERMVKDAEEYAEEDKKRKERIEAKNEAEEYVYSLEKSLEE  546

Query  593  VYAEFASEEEKDKLRAKLTDME  614
               +   E EK K+ + +  ++
Sbjct  547  -EGDKVPEAEKSKVESAIEWLK  567



Lambda      K        H        a         alpha
   0.316    0.133    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 827357190


Query= TCONS_00002143

Length=632
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  466     2e-158


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 466 bits (1202),  Expect = 2e-158, Method: Composition-based stats.
 Identities = 199/602 (33%), Positives = 294/602 (49%), Gaps = 69/602 (11%)

Query  2    SNLKNTVGNLKRLIGRSFNDPDVEIEQKYTSAAIC-DVNGQAGVEVSYLGKKEKFSATQL  60
            +N KNTV ++KRLIGR F+DP V+ + K+    +    NG AGVEV YLG  E F+  Q+
Sbjct  56   TNPKNTVFSVKRLIGRKFSDPVVQRDIKHLPYKVVKLPNGDAGVEVRYLG--ETFTPEQI  113

Query  61   AAMYLTKIRDITSKELKLPVSDVTISVPAWFTDAQRRAMIDAGEIAGLKVLRLINDTTAT  120
            +AM L K+++     L  PV+D  I+VPA+F DAQR+A  DAG+IAGL VLR++N+ TA 
Sbjct  114  SAMILQKLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGQIAGLNVLRIVNEPTAA  173

Query  121  ALGYGITKLDLPGPEEKPRRVMFVDIGHSDYTASVVEFRKGELNVKATAYDRHFGGRDFD  180
            AL YG+ K D      K R +   D+G   +  S++E  +G   VKAT  D H GG DFD
Sbjct  174  ALAYGLDKTD------KERNIAVYDLGGGTFDVSILEIGRGVFEVKATNGDTHLGGEDFD  227

Query  181  IALTEHFADEFKEKFKIDVRSNPKAYARTVAAAEKMKKVLSANPA-APMSIESLMED-VD  238
            + L +H A+EFK+K+ ID+  + +A  R   AAEK K  LS+N     +   + M D  D
Sbjct  228  LRLVDHLAEEFKKKYGIDLSKDKRALQRLREAAEKAKIELSSNQTNINLPFITAMADGKD  287

Query  239  VRSIVKREELETMVKPLLERVTIPIEEALAEAKLKPEDIDTIEMVGGCTRVPAIKEAISK  298
            V   + R + E +V  L ER   P+E+AL +A L   +ID + +VGG TR+PA++E + +
Sbjct  288  VSGTLTRAKFEELVADLFERTLEPVEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKE  347

Query  299  FFGKTLSFTLNQDEAIARGCAFSCAILSPVFRVRDFSVHDIV--NYPIEFTWE-QSADIP  355
            FFGK  S  +N DEA+A G A    +LS  F V+DF + D+   +  IE      +  IP
Sbjct  348  FFGKEPSKGVNPDEAVAIGAAVQAGVLSGTFDVKDFLLLDVTPLSLGIETLGGVMTKLIP  407

Query  356  DEDTSLTVFNRGNVMPSTKILTFYRKQPFDLEARYAKPDMLPGKINPWIGRFSVKGVKAD  415
               T  T                 +    +++    + +M P   N  +G F + G+   
Sbjct  408  RNTTIPT-----KKSQIFSTAADNQT-AVEIQVYQGEREMAPD--NKLLGSFELDGIPPA  459

Query  416  ANDDFMICKLKARLNLHGILNVESGYYVEDVEVEEPVDEDKMDTDAPEGEQPKKTRKVKK  475
                  I ++   ++ +GIL V +                            K T K ++
Sbjct  460  PRGVPQI-EVTFDIDANGILTVSAKD--------------------------KGTGKEQE  492

Query  476  QVRKGDLPISTGTNSVDQTVKETWIER----ENAMYMEDKLIAETDEKKNELESTIYELR  531
                  + I     S   +  E  IER          EDK   E  E KNE E  +Y L 
Sbjct  493  ------ITI---EASEGLSDDE--IERMVKDAEEYAEEDKKRKERIEAKNEAEEYVYSLE  541

Query  532  DKIDGVYAEFASEEEKDKLRAKLTDMEDWLYEEGEDTTKSVYVAKLDEIRFIAGPIVQRY  591
              ++    +   E EK K+ +      +WL +E E   K    AK +E+  ++  I +R 
Sbjct  542  KSLEE-EGDKVPEAEKSKVESA----IEWLKDELEGDDKEEIEAKTEELAQVSQKIGERM  596

Query  592  KE  593
             +
Sbjct  597  YQ  598



Lambda      K        H        a         alpha
   0.314    0.132    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 794911810


Query= TCONS_00007530

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  519     1e-178


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 519 bits (1338),  Expect = 1e-178, Method: Composition-based stats.
 Identities = 210/622 (34%), Positives = 312/622 (50%), Gaps = 65/622 (10%)

Query  3    VVGIDFGAQSTKVGVARNKGIDIITNEVSNRSTPTLVGFGTRSRHIGEGAKTQEMSNLKN  62
            V+GID G  ++ V V    G ++I N   NR+TP++V F  + R +G+ AK Q ++N KN
Sbjct  1    VIGIDLGTTNSCVAVMEGGGPEVIANAEGNRTTPSVVAFTPKERLVGQAAKNQAVTNPKN  60

Query  63   TVGNLKRLIGRSFNDPDVEIEQKYTSAAIC-DVNGQAGVEVSYLGKKEKFSATQLAAMYL  121
            TV ++KRLIGR F+DP V+ + K+    +    NG AGVEV YLG  E F+  Q++AM L
Sbjct  61   TVFSVKRLIGRKFSDPVVQRDIKHLPYKVVKLPNGDAGVEVRYLG--ETFTPEQISAMIL  118

Query  122  TKIRDITSKELKLPVSDVTISVPAWFTDAQRRAMIDAGEIAGLKVLRLINDTTATALGYG  181
             K+++     L  PV+D  I+VPA+F DAQR+A  DAG+IAGL VLR++N+ TA AL YG
Sbjct  119  QKLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGQIAGLNVLRIVNEPTAAALAYG  178

Query  182  ITKLDLPGPEEKPRRVMFVDIGHSDYTASVVEFRKGELNVKATAYDRHFGGRDFDIALTE  241
            + K D      K R +   D+G   +  S++E  +G   VKAT  D H GG DFD+ L +
Sbjct  179  LDKTD------KERNIAVYDLGGGTFDVSILEIGRGVFEVKATNGDTHLGGEDFDLRLVD  232

Query  242  HFADEFKEKFKIDVRSNPKAYARTVAAAEKMKKVLSANPA-APMSIESLMED-VDVRSIV  299
            H A+EFK+K+ ID+  + +A  R   AAEK K  LS+N     +   + M D  DV   +
Sbjct  233  HLAEEFKKKYGIDLSKDKRALQRLREAAEKAKIELSSNQTNINLPFITAMADGKDVSGTL  292

Query  300  KREELETMVKPLLERVTIPIEEALAEAKLKPEDIDTIEMVGGCTRVPAIKEAISKFFGKT  359
             R + E +V  L ER   P+E+AL +A L   +ID + +VGG TR+PA++E + +FFGK 
Sbjct  293  TRAKFEELVADLFERTLEPVEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKE  352

Query  360  LSFTLNQDEAIARGCAFSCAILSPVFRVRDFSVHDIV--NYPIEFTWE-QSADIPDEDTS  416
             S  +N DEA+A G A    +LS  F V+DF + D+   +  IE      +  IP   T 
Sbjct  353  PSKGVNPDEAVAIGAAVQAGVLSGTFDVKDFLLLDVTPLSLGIETLGGVMTKLIPRNTTI  412

Query  417  LTVFNRGNVMPSTKILTFYRKQPFDLEARYAKPDMLPGKINPWIGRFSVKGVKADANDDF  476
             T                 +    +++    + +M P   N  +G F + G+        
Sbjct  413  PT-----KKSQIFSTAADNQT-AVEIQVYQGEREMAPD--NKLLGSFELDGIPPAPRGVP  464

Query  477  MICKLKARLNLHGILNVESGYYVEDVEVEEPVDEDKMDTDAPEGEQPKKTRKVKKQVRKG  536
             I ++   ++ +GIL V +                            K T K ++     
Sbjct  465  QI-EVTFDIDANGILTVSAKD--------------------------KGTGKEQE-----  492

Query  537  DLPISTGTNSVDQTVKETWIER----ENAMYMEDKLIAETDEKKNELESTIYELRDKIDG  592
             + I     S   +  E  IER          EDK   E  E KNE E  +Y L   ++ 
Sbjct  493  -ITI---EASEGLSDDE--IERMVKDAEEYAEEDKKRKERIEAKNEAEEYVYSLEKSLEE  546

Query  593  VYAEFASEEEKDKLRAKLTDME  614
               +   E EK K+ + +  ++
Sbjct  547  -EGDKVPEAEKSKVESAIEWLK  567



Lambda      K        H        a         alpha
   0.316    0.133    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 827357190


Query= TCONS_00007531

Length=712
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  527     0.0  


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 527 bits (1361),  Expect = 0.0, Method: Composition-based stats.
 Identities = 220/657 (33%), Positives = 327/657 (50%), Gaps = 69/657 (11%)

Query  3    VVGIDFGAQSTKVGVARNKGIDIITNEVSNRSTPTLVGFGTRSRHIGEGAKTQEMSNLKN  62
            V+GID G  ++ V V    G ++I N   NR+TP++V F  + R +G+ AK Q ++N KN
Sbjct  1    VIGIDLGTTNSCVAVMEGGGPEVIANAEGNRTTPSVVAFTPKERLVGQAAKNQAVTNPKN  60

Query  63   TVGNLKRLIGRSFNDPDVEIEQKYTSAAIC-DVNGQAGVEVSYLGKKEKFSATQLAAMYL  121
            TV ++KRLIGR F+DP V+ + K+    +    NG AGVEV YLG  E F+  Q++AM L
Sbjct  61   TVFSVKRLIGRKFSDPVVQRDIKHLPYKVVKLPNGDAGVEVRYLG--ETFTPEQISAMIL  118

Query  122  TKIRDITSKELKLPVSDVTISVPAWFTDAQRRAMIDAGEIAGLKVLRLINDTTATALGYG  181
             K+++     L  PV+D  I+VPA+F DAQR+A  DAG+IAGL VLR++N+ TA AL YG
Sbjct  119  QKLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGQIAGLNVLRIVNEPTAAALAYG  178

Query  182  ITKLDLPGPEEKPRRVMFVDIGHSDYTASVVEFRKGELNVKATAYDRHFGGRDFDIALTE  241
            + K D      K R +   D+G   +  S++E  +G   VKAT  D H GG DFD+ L +
Sbjct  179  LDKTD------KERNIAVYDLGGGTFDVSILEIGRGVFEVKATNGDTHLGGEDFDLRLVD  232

Query  242  HFADEFKEKFKIDVRSNPKAYARTVAAAEKMKKVLSANPA-APMSIESLMED-VDVRSIV  299
            H A+EFK+K+ ID+  + +A  R   AAEK K  LS+N     +   + M D  DV   +
Sbjct  233  HLAEEFKKKYGIDLSKDKRALQRLREAAEKAKIELSSNQTNINLPFITAMADGKDVSGTL  292

Query  300  KREELETMVKPLLERVTIPIEEALAEAKLKPEDIDTIEMVGGCTRVPAIKEAISKFFGKT  359
             R + E +V  L ER   P+E+AL +A L   +ID + +VGG TR+PA++E + +FFGK 
Sbjct  293  TRAKFEELVADLFERTLEPVEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKE  352

Query  360  LSFTLNQDEAIARGCAFSCAILSPVFRVRDFSVHDIV--NYPIEFTWE-QSADIPDEDTS  416
             S  +N DEA+A G A    +LS  F V+DF + D+   +  IE      +  IP   T 
Sbjct  353  PSKGVNPDEAVAIGAAVQAGVLSGTFDVKDFLLLDVTPLSLGIETLGGVMTKLIPRNTTI  412

Query  417  LTVFNRGNVMPSTKILTFYRKQPFDLEARYAKPDMLPGKINPWIGRFSVKGVKADANDDF  476
             T                 +    +++    + +M P   N  +G F + G+        
Sbjct  413  PT-----KKSQIFSTAADNQT-AVEIQVYQGEREMAPD--NKLLGSFELDGIPPAPRGVP  464

Query  477  MICKLKARLNLHGILNVESGYYVEDVEVEEPVDEDKMDTDAPEGEQPKKTRKVKKQVRKG  536
             I ++   ++ +GIL V +                            K T K ++     
Sbjct  465  QI-EVTFDIDANGILTVSAKD--------------------------KGTGKEQE-----  492

Query  537  DLPISTGTNSVDQTVKETWIER----ENAMYMEDKLIAETDEKKNELESTIYELRDKIDG  592
             + I     S   +  E  IER          EDK   E  E KNE E  +Y L   ++ 
Sbjct  493  -ITI---EASEGLSDDE--IERMVKDAEEYAEEDKKRKERIEAKNEAEEYVYSLEKSLEE  546

Query  593  VYAEFASEEEKDKLRAKLTDMEDWLYEEGEDTTKSVYVAKLDEIRFIAGPIVQRYKE  649
               +   E EK K+ +      +WL +E E   K    AK +E+  ++  I +R  +
Sbjct  547  -EGDKVPEAEKSKVESA----IEWLKDELEGDDKEEIEAKTEELAQVSQKIGERMYQ  598



Lambda      K        H        a         alpha
   0.313    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 912895010


Query= TCONS_00002145

Length=714
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  527     0.0  


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 527 bits (1361),  Expect = 0.0, Method: Composition-based stats.
 Identities = 220/657 (33%), Positives = 327/657 (50%), Gaps = 69/657 (11%)

Query  3    VVGIDFGAQSTKVGVARNKGIDIITNEVSNRSTPTLVGFGTRSRHIGEGAKTQEMSNLKN  62
            V+GID G  ++ V V    G ++I N   NR+TP++V F  + R +G+ AK Q ++N KN
Sbjct  1    VIGIDLGTTNSCVAVMEGGGPEVIANAEGNRTTPSVVAFTPKERLVGQAAKNQAVTNPKN  60

Query  63   TVGNLKRLIGRSFNDPDVEIEQKYTSAAIC-DVNGQAGVEVSYLGKKEKFSATQLAAMYL  121
            TV ++KRLIGR F+DP V+ + K+    +    NG AGVEV YLG  E F+  Q++AM L
Sbjct  61   TVFSVKRLIGRKFSDPVVQRDIKHLPYKVVKLPNGDAGVEVRYLG--ETFTPEQISAMIL  118

Query  122  TKIRDITSKELKLPVSDVTISVPAWFTDAQRRAMIDAGEIAGLKVLRLINDTTATALGYG  181
             K+++     L  PV+D  I+VPA+F DAQR+A  DAG+IAGL VLR++N+ TA AL YG
Sbjct  119  QKLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGQIAGLNVLRIVNEPTAAALAYG  178

Query  182  ITKLDLPGPEEKPRRVMFVDIGHSDYTASVVEFRKGELNVKATAYDRHFGGRDFDIALTE  241
            + K D      K R +   D+G   +  S++E  +G   VKAT  D H GG DFD+ L +
Sbjct  179  LDKTD------KERNIAVYDLGGGTFDVSILEIGRGVFEVKATNGDTHLGGEDFDLRLVD  232

Query  242  HFADEFKEKFKIDVRSNPKAYARTVAAAEKMKKVLSANPA-APMSIESLMED-VDVRSIV  299
            H A+EFK+K+ ID+  + +A  R   AAEK K  LS+N     +   + M D  DV   +
Sbjct  233  HLAEEFKKKYGIDLSKDKRALQRLREAAEKAKIELSSNQTNINLPFITAMADGKDVSGTL  292

Query  300  KREELETMVKPLLERVTIPIEEALAEAKLKPEDIDTIEMVGGCTRVPAIKEAISKFFGKT  359
             R + E +V  L ER   P+E+AL +A L   +ID + +VGG TR+PA++E + +FFGK 
Sbjct  293  TRAKFEELVADLFERTLEPVEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKE  352

Query  360  LSFTLNQDEAIARGCAFSCAILSPVFRVRDFSVHDIV--NYPIEFTWE-QSADIPDEDTS  416
             S  +N DEA+A G A    +LS  F V+DF + D+   +  IE      +  IP   T 
Sbjct  353  PSKGVNPDEAVAIGAAVQAGVLSGTFDVKDFLLLDVTPLSLGIETLGGVMTKLIPRNTTI  412

Query  417  LTVFNRGNVMPSTKILTFYRKQPFDLEARYAKPDMLPGKINPWIGRFSVKGVKADANDDF  476
             T                 +    +++    + +M P   N  +G F + G+        
Sbjct  413  PT-----KKSQIFSTAADNQT-AVEIQVYQGEREMAPD--NKLLGSFELDGIPPAPRGVP  464

Query  477  MICKLKARLNLHGILNVESGYYVEDVEVEEPVDEDKMDTDAPEGEQPKKTRKVKKQVRKG  536
             I ++   ++ +GIL V +                            K T K ++     
Sbjct  465  QI-EVTFDIDANGILTVSAKD--------------------------KGTGKEQE-----  492

Query  537  DLPISTGTNSVDQTVKETWIER----ENAMYMEDKLIAETDEKKNELESTIYELRDKIDG  592
             + I     S   +  E  IER          EDK   E  E KNE E  +Y L   ++ 
Sbjct  493  -ITI---EASEGLSDDE--IERMVKDAEEYAEEDKKRKERIEAKNEAEEYVYSLEKSLEE  546

Query  593  VYAEFASEEEKDKLRAKLTDMEDWLYEEGEDTTKSVYVAKLDEIRFIAGPIVQRYKE  649
               +   E EK K+ +      +WL +E E   K    AK +E+  ++  I +R  +
Sbjct  547  -EGDKVPEAEKSKVESA----IEWLKDELEGDDKEEIEAKTEELAQVSQKIGERMYQ  598



Lambda      K        H        a         alpha
   0.313    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 902194240


Query= TCONS_00002146

Length=714
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  527     0.0  


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 527 bits (1361),  Expect = 0.0, Method: Composition-based stats.
 Identities = 220/657 (33%), Positives = 327/657 (50%), Gaps = 69/657 (11%)

Query  3    VVGIDFGAQSTKVGVARNKGIDIITNEVSNRSTPTLVGFGTRSRHIGEGAKTQEMSNLKN  62
            V+GID G  ++ V V    G ++I N   NR+TP++V F  + R +G+ AK Q ++N KN
Sbjct  1    VIGIDLGTTNSCVAVMEGGGPEVIANAEGNRTTPSVVAFTPKERLVGQAAKNQAVTNPKN  60

Query  63   TVGNLKRLIGRSFNDPDVEIEQKYTSAAIC-DVNGQAGVEVSYLGKKEKFSATQLAAMYL  121
            TV ++KRLIGR F+DP V+ + K+    +    NG AGVEV YLG  E F+  Q++AM L
Sbjct  61   TVFSVKRLIGRKFSDPVVQRDIKHLPYKVVKLPNGDAGVEVRYLG--ETFTPEQISAMIL  118

Query  122  TKIRDITSKELKLPVSDVTISVPAWFTDAQRRAMIDAGEIAGLKVLRLINDTTATALGYG  181
             K+++     L  PV+D  I+VPA+F DAQR+A  DAG+IAGL VLR++N+ TA AL YG
Sbjct  119  QKLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGQIAGLNVLRIVNEPTAAALAYG  178

Query  182  ITKLDLPGPEEKPRRVMFVDIGHSDYTASVVEFRKGELNVKATAYDRHFGGRDFDIALTE  241
            + K D      K R +   D+G   +  S++E  +G   VKAT  D H GG DFD+ L +
Sbjct  179  LDKTD------KERNIAVYDLGGGTFDVSILEIGRGVFEVKATNGDTHLGGEDFDLRLVD  232

Query  242  HFADEFKEKFKIDVRSNPKAYARTVAAAEKMKKVLSANPA-APMSIESLMED-VDVRSIV  299
            H A+EFK+K+ ID+  + +A  R   AAEK K  LS+N     +   + M D  DV   +
Sbjct  233  HLAEEFKKKYGIDLSKDKRALQRLREAAEKAKIELSSNQTNINLPFITAMADGKDVSGTL  292

Query  300  KREELETMVKPLLERVTIPIEEALAEAKLKPEDIDTIEMVGGCTRVPAIKEAISKFFGKT  359
             R + E +V  L ER   P+E+AL +A L   +ID + +VGG TR+PA++E + +FFGK 
Sbjct  293  TRAKFEELVADLFERTLEPVEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKE  352

Query  360  LSFTLNQDEAIARGCAFSCAILSPVFRVRDFSVHDIV--NYPIEFTWE-QSADIPDEDTS  416
             S  +N DEA+A G A    +LS  F V+DF + D+   +  IE      +  IP   T 
Sbjct  353  PSKGVNPDEAVAIGAAVQAGVLSGTFDVKDFLLLDVTPLSLGIETLGGVMTKLIPRNTTI  412

Query  417  LTVFNRGNVMPSTKILTFYRKQPFDLEARYAKPDMLPGKINPWIGRFSVKGVKADANDDF  476
             T                 +    +++    + +M P   N  +G F + G+        
Sbjct  413  PT-----KKSQIFSTAADNQT-AVEIQVYQGEREMAPD--NKLLGSFELDGIPPAPRGVP  464

Query  477  MICKLKARLNLHGILNVESGYYVEDVEVEEPVDEDKMDTDAPEGEQPKKTRKVKKQVRKG  536
             I ++   ++ +GIL V +                            K T K ++     
Sbjct  465  QI-EVTFDIDANGILTVSAKD--------------------------KGTGKEQE-----  492

Query  537  DLPISTGTNSVDQTVKETWIER----ENAMYMEDKLIAETDEKKNELESTIYELRDKIDG  592
             + I     S   +  E  IER          EDK   E  E KNE E  +Y L   ++ 
Sbjct  493  -ITI---EASEGLSDDE--IERMVKDAEEYAEEDKKRKERIEAKNEAEEYVYSLEKSLEE  546

Query  593  VYAEFASEEEKDKLRAKLTDMEDWLYEEGEDTTKSVYVAKLDEIRFIAGPIVQRYKE  649
               +   E EK K+ +      +WL +E E   K    AK +E+  ++  I +R  +
Sbjct  547  -EGDKVPEAEKSKVESA----IEWLKDELEGDDKEEIEAKTEELAQVSQKIGERMYQ  598



Lambda      K        H        a         alpha
   0.313    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 902194240


Query= TCONS_00002147

Length=658
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  465     1e-157


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 465 bits (1198),  Expect = 1e-157, Method: Composition-based stats.
 Identities = 199/602 (33%), Positives = 294/602 (49%), Gaps = 69/602 (11%)

Query  2    SNLKNTVGNLKRLIGRSFNDPDVEIEQKYTSAAIC-DVNGQAGVEVSYLGKKEKFSATQL  60
            +N KNTV ++KRLIGR F+DP V+ + K+    +    NG AGVEV YLG  E F+  Q+
Sbjct  56   TNPKNTVFSVKRLIGRKFSDPVVQRDIKHLPYKVVKLPNGDAGVEVRYLG--ETFTPEQI  113

Query  61   AAMYLTKIRDITSKELKLPVSDVTISVPAWFTDAQRRAMIDAGEIAGLKVLRLINDTTAT  120
            +AM L K+++     L  PV+D  I+VPA+F DAQR+A  DAG+IAGL VLR++N+ TA 
Sbjct  114  SAMILQKLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGQIAGLNVLRIVNEPTAA  173

Query  121  ALGYGITKLDLPGPEEKPRRVMFVDIGHSDYTASVVEFRKGELNVKATAYDRHFGGRDFD  180
            AL YG+ K D      K R +   D+G   +  S++E  +G   VKAT  D H GG DFD
Sbjct  174  ALAYGLDKTD------KERNIAVYDLGGGTFDVSILEIGRGVFEVKATNGDTHLGGEDFD  227

Query  181  IALTEHFADEFKEKFKIDVRSNPKAYARTVAAAEKMKKVLSANPA-APMSIESLMED-VD  238
            + L +H A+EFK+K+ ID+  + +A  R   AAEK K  LS+N     +   + M D  D
Sbjct  228  LRLVDHLAEEFKKKYGIDLSKDKRALQRLREAAEKAKIELSSNQTNINLPFITAMADGKD  287

Query  239  VRSIVKREELETMVKPLLERVTIPIEEALAEAKLKPEDIDTIEMVGGCTRVPAIKEAISK  298
            V   + R + E +V  L ER   P+E+AL +A L   +ID + +VGG TR+PA++E + +
Sbjct  288  VSGTLTRAKFEELVADLFERTLEPVEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKE  347

Query  299  FFGKTLSFTLNQDEAIARGCAFSCAILSPVFRVRDFSVHDIV--NYPIEFTWE-QSADIP  355
            FFGK  S  +N DEA+A G A    +LS  F V+DF + D+   +  IE      +  IP
Sbjct  348  FFGKEPSKGVNPDEAVAIGAAVQAGVLSGTFDVKDFLLLDVTPLSLGIETLGGVMTKLIP  407

Query  356  DEDTSLTVFNRGNVMPSTKILTFYRKQPFDLEARYAKPDMLPGKINPWIGRFSVKGVKAD  415
               T  T                 +    +++    + +M P   N  +G F + G+   
Sbjct  408  RNTTIPT-----KKSQIFSTAADNQT-AVEIQVYQGEREMAPD--NKLLGSFELDGIPPA  459

Query  416  ANDDFMICKLKARLNLHGILNVESGYYVEDVEVEEPVDEDKMDTDAPEGEQPKKTRKVKK  475
                  I ++   ++ +GIL V +                            K T K ++
Sbjct  460  PRGVPQI-EVTFDIDANGILTVSAKD--------------------------KGTGKEQE  492

Query  476  QVRKGDLPISTGTNSVDQTVKETWIER----ENAMYMEDKLIAETDEKKNELESTIYELR  531
                  + I     S   +  E  IER          EDK   E  E KNE E  +Y L 
Sbjct  493  ------ITI---EASEGLSDDE--IERMVKDAEEYAEEDKKRKERIEAKNEAEEYVYSLE  541

Query  532  DKIDGVYAEFASEEEKDKLRAKLTDMEDWLYEEGEDTTKSVYVAKLDEIRFIAGPIVQRY  591
              ++    +   E EK K+ +      +WL +E E   K    AK +E+  ++  I +R 
Sbjct  542  KSLEE-EGDKVPEAEKSKVESA----IEWLKDELEGDDKEEIEAKTEELAQVSQKIGERM  596

Query  592  KE  593
             +
Sbjct  597  YQ  598



Lambda      K        H        a         alpha
   0.313    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 833256350


Query= TCONS_00002150

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            86.3    1e-20


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 86.3 bits (214),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 48/156 (31%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query  47   LYLAVFLVALDQTIIGVAIPK-ITDQFK-SIEDIAWYGSAYFLTSTALQPSYGRIYKIFS  104
            L+LA FL AL ++++G A+P  + +    S  +I    + + L     QP  GR+   F 
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  105  VKWAFLIAVLIFEIGSLICAVAPSSTVLIVGRAIAGIGVAGIFSGAMVIISVTVPLPKRP  164
             +   LI +L+F +G L+   A S  +L+V R + G+G   +F  A+ +I+   P  +R 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  165  LVFGMFGMVWGIASIAGPLLGGAFTDGVSWRWCFYI  200
               G+    +G+ +  GPLLGG       WR  F I
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLI  156



Lambda      K        H        a         alpha
   0.325    0.141    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00002148

Length=551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            100     1e-23
CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TR...  77.4    2e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 100 bits (251),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 82/405 (20%), Positives = 142/405 (35%), Gaps = 64/405 (16%)

Query  47   LYLAVFLVALDQTIIGVAIPK-ITDQFK-SIEDIAWYGSAYFLTSTALQPSYGRIYKIFS  104
            L+LA FL AL ++++G A+P  + +    S  +I    + + L     QP  GR+   F 
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  105  VKWAFLIAVLIFEIGSLICAVAPSSTVLIVGRAIAGIGVAGIFSGAMVIISVTVPLPKRP  164
             +   LI +L+F +G L+   A S  +L+V R + G+G   +F  A+ +I+   P  +R 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  165  LVFGMFGMVWGIASIAGPLLGGAFTDGVSWRWCFYINLPIGGVSLAVILFVLRLPDKNDF  224
               G+    +G+ +  GPLLGG       WR  F I   +  ++  ++L     P+    
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRP  180

Query  225  SGSPILERIQQLDLIGAGLLIPAIICLLLALQWGGNKYPWNNSRIIGLFVGFGVMAILFA  284
              +                                 K    +  +  L          F 
Sbjct  181  KPAE----------------------EARLSLIVAWKALLRDPVLWLLLALLLFGFAFFG  218

Query  285  FSQVKLADKATLPPRMFKNRSVLAATLFALFFGGAFFVLVYYLPIFFQSVKDSSAMKSGI  344
                                                   + YLP+ +Q V   SA+ +G+
Sbjct  219  L--------------------------------------LTYLPL-YQEVLGLSALLAGL  239

Query  345  QLLPLMLATVVSSMVMGGAVTAAGYYTPFLIGSTAIAAIGAGLVTMYEIDISTGKWIGYQ  404
             L    L   +  +++G      G     L+    +     GL+ +     S    +   
Sbjct  240  LLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-  298

Query  405  IVLGAGVGAGFQIPMTAVQTVLPAEDIPIGTAAVMFFQTLGGALF  449
            ++LG G G  F      V  + P E+    +       +LGGAL 
Sbjct  299  LLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG  343


>CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12).  
This family consists of several fungal specific trichothecene 
efflux pump proteins. Many of the genes involved in trichothecene 
toxin biosynthesis in Fusarium sporotrichioides are 
present within a gene cluster.It has been suggested that TRI12 
may play a role in F. sporotrichioides self-protection against 
trichothecenes.
Length=598

 Score = 77.4 bits (190),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 120/566 (21%), Positives = 221/566 (39%), Gaps = 68/566 (12%)

Query  11   VDIENVPKEKLDVK----ETEKEPDFEYPALSKVVVIILGLYLAVFLVALDQTIIGVAIP  66
            +D+E+ P ++L  K       + PD  Y +  +++       L V            A+P
Sbjct  10   LDLESQPDDRLRAKALATSAAELPDGYYRS-PRIIASFAAFSLNVCATYFVLQASASALP  68

Query  67   KITDQFKSIEDIAWYGSAYFLTSTALQPSYGRIYKIFSVKWAFLIAVLIFE-IGSLI-CA  124
             I       E+   + + + +         GR+   F  +  F+IA  I   +G+++ C 
Sbjct  69   NILQDIGQSENQGLFSTLWTMGQAVSILMMGRLTDRFGRR-PFVIATHIIGLVGAIVGCT  127

Query  125  VAPSSTVL----IVGRAIAGIGVAGIFSGAMV--------IISVTVPLPKRPLVFGMFGM  172
                +T+L    ++G A    G + +F G ++        ++ V+ P             
Sbjct  128  ANKFNTLLAAMTLLGVAAGPAGASPLFIGELMSNKTKFLGLLIVSAPTI-----------  176

Query  173  VWGIASIAGPLLGGAFTDGVSWRWCFYINLPIGGVSLAVILFVLRLPDKNDFSGSPILER  232
                 + AGP  G       +WRW FYI + +  +++ +I+     P      G    +R
Sbjct  177  ---AMNGAGPYFGQRLAIQGNWRWIFYIYIIMSAIAVLLIIIWYHPPSFAQLHGKKARKR  233

Query  233  --IQQLDLIGAGLLIPAIICLLLALQWGGN-KYPWNNSRIIGLFV-GFGVMAILFAFSQV  288
              + +LD IG  L+I      LL + WGG    PWN+++IIGL   G G + I   +   
Sbjct  234  DELAKLDWIGIFLVIAGTSLFLLGVSWGGKPNNPWNSAKIIGLISSGAGSLVIFALYEVF  293

Query  289  KLADKATLPPRMFKN-RSVLAATLFALFFGGAFFVLVYYLP-----IFFQSVKD--SSAM  340
               ++  +PP +FK+ R  +   + +   G     L    P     IF  S+K+   +A 
Sbjct  294  GKPEQPIIPPALFKDTRGFVCILIISSIMGAMHLCLTIIYPQQVINIFGSSLKNWEETAW  353

Query  341  KSGIQLLPLMLATVVSSMVMGGAVTAAGYYT-PFLIGSTAIAAIGAGLVTMYEIDISTGK  399
             S          T    M++G       +     L+G+  + A    + ++   + +   
Sbjct  354  MSATA----SFGTGAGVMILGNLFHLIRHIRWQILVGALWLTAFLGAMSSINRDNKNAA-  408

Query  400  WIGYQIVLGAGVGAGFQIPMTAVQTVLPAEDIPIGTAAVMFFQTLGGALFIAVAQSVFQN  459
             I      G  V     I M  VQ +   ED+ +  A V   +   G++F A   S++ N
Sbjct  409  -IALSFFSGFVVAWAQDITMLLVQFITTDEDLGVAFAVVAAARPFAGSIFTAAFISLYSN  467

Query  460  GLISGLAKYA---------PTVDPTAIVKAGAT-EMRTVLTQLGQLDQLMNVI-KAYMDG  508
                 +A +          P     ++++A  +  +  V    G  +++  V+ +A  D 
Sbjct  468  QYPKEIASHLSSALRGTDFPQASFPSLLEAAKSGRIDAVKALPGMTNEIAAVVSQAMADS  527

Query  509  LRASYR----VSLALVLVAFLASLLM  530
              ASY      ++AL ++  +ASL M
Sbjct  528  YTASYANVYYFAMALGVIPIIASLCM  553



Lambda      K        H        a         alpha
   0.325    0.140    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685942452


Query= TCONS_00007532

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            86.3    1e-20


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 86.3 bits (214),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 48/156 (31%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query  47   LYLAVFLVALDQTIIGVAIPK-ITDQFK-SIEDIAWYGSAYFLTSTALQPSYGRIYKIFS  104
            L+LA FL AL ++++G A+P  + +    S  +I    + + L     QP  GR+   F 
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  105  VKWAFLIAVLIFEIGSLICAVAPSSTVLIVGRAIAGIGVAGIFSGAMVIISVTVPLPKRP  164
             +   LI +L+F +G L+   A S  +L+V R + G+G   +F  A+ +I+   P  +R 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  165  LVFGMFGMVWGIASIAGPLLGGAFTDGVSWRWCFYI  200
               G+    +G+ +  GPLLGG       WR  F I
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLI  156



Lambda      K        H        a         alpha
   0.325    0.141    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00002149

Length=273


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00007533

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  72.8    1e-15


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 72.8 bits (179),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 58/235 (25%), Positives = 74/235 (31%), Gaps = 91/235 (39%)

Query  105  NERGLETWIAHGTLLGWWWNGKVLPWDWDIDTQVLDTTLLRLADQFNQTV-------VHY  157
             + GL  W++ GTLLG   +G  +PWD DID Q+      RLA  FNQ +          
Sbjct  2    KKNGLIYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGN  61

Query  158  TAADSSVERSYLLDVNPWARQRERGQGLNIIDARWIDRRTGLYIDITGLSRL--------  209
               +     + LLDVN     R  G G N          +GL+IDI  L  +        
Sbjct  62   KDDNYFFPGAKLLDVNTSITVRVNGNGKND---------SGLFIDIFPLDSVPDSPEEIY  112

Query  210  -EPEKPSLWQD-------------------------------------------------  219
                K  L Q                                                  
Sbjct  113  KVKLKNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAE  172

Query  220  -----------------KNDHKYQTGDIYPLRKTTFEGVPAKIPFDYDSVLIKEY  257
                             +N   +   +  PLRKT FEGV A IP +YD  L  EY
Sbjct  173  YDLSPSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEY  227



Lambda      K        H        a         alpha
   0.318    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00002153

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Th...  195     3e-61
CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain. Th...  160     4e-49


>CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=260

 Score = 195 bits (499),  Expect = 3e-61, Method: Composition-based stats.
 Identities = 92/254 (36%), Positives = 126/254 (50%), Gaps = 50/254 (20%)

Query  14   KKNPINRYQVND---------GKAAYLVRAAALAAGIPHTAGASSVNRFCSSGLKAVQDI  64
            ++  ++   V++         G+     R AAL AGIP +A A ++N+ C SGLKAV   
Sbjct  36   ERAGVDPEDVDEVIVGNVLQAGEGQNPARQAALKAGIPDSAPAVTINKVCGSGLKAVYLA  95

Query  65   ANQIQLGAIDVGIAVGAELMSAGGDRLPR-PFNEEVLKNQEAADCMQP-----------M  112
            A  I  G  DV +A G E MS     LP    +     +++  D + P           M
Sbjct  96   AQSIASGDADVVLAGGVESMSHAPYALPTDARSGLKHGDEKKHDLLIPDGLTDAFNGYHM  155

Query  113  GQTSENVGADFNITREMQDTYAAESFRRAEAAQKAGWFDDEIVPITTKVKDPKTGEVKTV  172
            G T+ENV   + I+RE QD +A +S ++A AA KAG F DEIVP+T K +  K       
Sbjct  156  GLTAENVAKKYGISREEQDAFAVKSHQKAAAAPKAGKFKDEIVPVTVKGRKGKP------  209

Query  173  TLTRDEGIRYGTTVEALSKIRPAFPQFGTRTTGGNASQVTDGGKPCNPCTASDVDVLMEI  232
            T+ +DEGIR  TT E L+K++PAF + GT  T GNAS + DG                  
Sbjct  210  TVDKDEGIRPPTTAEPLAKLKPAFDKEGT-VTAGNASPINDG------------------  250

Query  233  KNLLAAAILLMRRS  246
                AAA+LLM  S
Sbjct  251  ----AAAVLLMSES  260


>CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=123

 Score = 160 bits (406),  Expect = 4e-49, Method: Composition-based stats.
 Identities = 64/122 (52%), Positives = 82/122 (67%), Gaps = 0/122 (0%)

Query  253  QPILAKFCGATVAGVPPRVMGIGPTAAIPKLLSKFNLSKDDIDIYEINEAFASMAVYCLK  312
               LA+      AGV P +MGIGP  AIPK L K  L+ +DID++EINEAFA+ A+   K
Sbjct  1    LKPLARIRSYATAGVDPAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQALAVAK  60

Query  313  NLGLDHAKVNPRGGAIALGHPLGATGARQICTILSEARRTKSKILVTSMCIGTGQGMAGL  372
            +LG+D  KVN  GGAIALGHPLGA+GAR + T+L E +R   K  + S+CIG GQG+A +
Sbjct  61   DLGIDPEKVNVNGGAIALGHPLGASGARILVTLLHELKRRGGKYGLASLCIGGGQGVAMI  120

Query  373  FV  374
              
Sbjct  121  IE  122



Lambda      K        H        a         alpha
   0.318    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00007534

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain. Th...  161     1e-50
CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Th...  130     5e-37


>CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=123

 Score = 161 bits (410),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 64/122 (52%), Positives = 82/122 (67%), Gaps = 0/122 (0%)

Query  170  QPILAKFCGATVAGVPPRVMGIGPTAAIPKLLSKFNLSKDDIDIYEINEAFASMAVYCLK  229
               LA+      AGV P +MGIGP  AIPK L K  L+ +DID++EINEAFA+ A+   K
Sbjct  1    LKPLARIRSYATAGVDPAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQALAVAK  60

Query  230  NLGLDHAKVNPRGGAIALGHPLGATGARQICTILSEARRTKSKILVTSMCIGTGQGMAGL  289
            +LG+D  KVN  GGAIALGHPLGA+GAR + T+L E +R   K  + S+CIG GQG+A +
Sbjct  61   DLGIDPEKVNVNGGAIALGHPLGASGARILVTLLHELKRRGGKYGLASLCIGGGQGVAMI  120

Query  290  FV  291
              
Sbjct  121  IE  122


>CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=260

 Score = 130 bits (329),  Expect = 5e-37, Method: Composition-based stats.
 Identities = 60/158 (38%), Positives = 81/158 (51%), Gaps = 40/158 (25%)

Query  17   LKNQEAADCMQP-----------MGQTSENVGADFNITREMQDTYAAESFRRAEAAQKAG  65
              +++  D + P           MG T+ENV   + I+RE QD +A +S ++A AA KAG
Sbjct  132  HGDEKKHDLLIPDGLTDAFNGYHMGLTAENVAKKYGISREEQDAFAVKSHQKAAAAPKAG  191

Query  66   WFDDEIVPITTKVKDPKTGEVKTVTLTRDEGIRYGTTVEALSKIRPAFPQFGTRTTGGNA  125
             F DEIVP+T K +  K       T+ +DEGIR  TT E L+K++PAF + GT  T GNA
Sbjct  192  KFKDEIVPVTVKGRKGKP------TVDKDEGIRPPTTAEPLAKLKPAFDKEGT-VTAGNA  244

Query  126  SQVTDGGKPCNPCTASDVDVLMEIKNLLAAAILLMRRS  163
            S + DG                      AAA+LLM  S
Sbjct  245  SPINDG----------------------AAAVLLMSES  260



Lambda      K        H        a         alpha
   0.317    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00007535

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  73.6    5e-16


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 73.6 bits (181),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 58/235 (25%), Positives = 74/235 (31%), Gaps = 91/235 (39%)

Query  105  NERGLETWIAHGTLLGWWWNGKVLPWDWDIDTQVLDTTLLRLADQFNQTV-------VHY  157
             + GL  W++ GTLLG   +G  +PWD DID Q+      RLA  FNQ +          
Sbjct  2    KKNGLIYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGN  61

Query  158  TAADSSVERSYLLDVNPWARQRERGQGLNIIDARWIDRRTGLYIDITGLSRL--------  209
               +     + LLDVN     R  G G N          +GL+IDI  L  +        
Sbjct  62   KDDNYFFPGAKLLDVNTSITVRVNGNGKND---------SGLFIDIFPLDSVPDSPEEIY  112

Query  210  -EPEKPSLWQD-------------------------------------------------  219
                K  L Q                                                  
Sbjct  113  KVKLKNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAE  172

Query  220  -----------------KNDHKYQTGDIYPLRKTTFEGVPAKIPFDYDSVLIKEY  257
                             +N   +   +  PLRKT FEGV A IP +YD  L  EY
Sbjct  173  YDLSPSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEY  227



Lambda      K        H        a         alpha
   0.319    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00007536

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428243 pfam04991, LicD, LicD family. The LICD family of prote...  73.2    6e-16


>CDD:428243 pfam04991, LicD, LicD family.  The LICD family of proteins show 
high sequence similarity and are involved in phosphorylcholine 
metabolism. There is evidence to show that LicD2 mutants 
have a reduced ability to take up choline, have decreased 
ability to adhere to host cells and are less virulent. These 
proteins are part of the nucleotidyltransferase superfamily.
Length=228

 Score = 73.2 bits (180),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 58/235 (25%), Positives = 74/235 (31%), Gaps = 91/235 (39%)

Query  105  NERGLETWIAHGTLLGWWWNGKVLPWDWDIDTQVLDTTLLRLADQFNQTV-------VHY  157
             + GL  W++ GTLLG   +G  +PWD DID Q+      RLA  FNQ +          
Sbjct  2    KKNGLIYWLSGGTLLGAVRHGGFIPWDDDIDIQMPRKDYERLAQLFNQLILDPYDLREGN  61

Query  158  TAADSSVERSYLLDVNPWARQRERGQGLNIIDARWIDRRTGLYIDITGLSRL--------  209
               +     + LLDVN     R  G G N          +GL+IDI  L  +        
Sbjct  62   KDDNYFFPGAKLLDVNTSITVRVNGNGKND---------SGLFIDIFPLDSVPDSPEEIY  112

Query  210  -EPEKPSLWQD-------------------------------------------------  219
                K  L Q                                                  
Sbjct  113  KVKLKNKLLQKLRLGDGLSSKRLYRLKKKILLNKKSFKLKSLNKKKFAKKIEQFLKKKAE  172

Query  220  -----------------KNDHKYQTGDIYPLRKTTFEGVPAKIPFDYDSVLIKEY  257
                             +N   +   +  PLRKT FEGV A IP +YD  L  EY
Sbjct  173  YDLSPSQYIGLNHSGYGRNKEFFPLEEFSPLRKTPFEGVEAPIPNNYDKYLTNEY  227



Lambda      K        H        a         alpha
   0.319    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00002154

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.123    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00002155

Length=404


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00002156

Length=404


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00002157

Length=1344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  145     3e-39
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  132     5e-36


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 145 bits (368),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 72/277 (26%), Positives = 135/277 (49%), Gaps = 6/277 (2%)

Query  745   VLLGLAMSVIIGGSYSAEAIVFGHTVGSLSPCRSAEAISRDGNLYGLLFFILALVEFGAN  804
             ++L + ++++ G    A  +V G  +  L P    E  ++  N+Y L   +L L +F  +
Sbjct  1     LILAILLAILSGAISPAFPLVLGRILDVLLPDGDPE--TQALNVYSLALLLLGLAQFILS  58

Query  805   VVGGCAFGWAADKVLYRIRVLSLRSLLGQTVKWHESEDRTPGTLLTYITGDASALGGITG  864
              +         +++  R+R    + +L Q + + +    + G LL+ +T D S +    G
Sbjct  59    FLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFD--TNSVGELLSRLTNDTSKIRDGLG  116

Query  865   TTIGLLLATAVNLIGGLVISFSIAWKITIVLFPTIPVLLVSGMMKLRVQKQLAERHQKAF  924
               +GLL  +   ++GG+++ F   WK+T+VL   +P+ ++   +  ++ ++L+ + QKA 
Sbjct  117   EKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAV  176

Query  925   AKATAVTIEAVDNIRAVSAFSLEKQSYQVYGRALRGPYRATIKATFHGNAWLALAFSISN  984
             AKA++V  E++  IR V AF  E+   + Y +AL    +A IK          +   I  
Sbjct  177   AKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGY  236

Query  985   LVYALAYWWGSKQIAEGRYS--QTQFFIVMPALLFST  1019
             L YALA W+G+  +  G  S      F+ + A LF  
Sbjct  237   LSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273


 Score = 133 bits (338),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 72/282 (26%), Positives = 138/282 (49%), Gaps = 12/282 (4%)

Query  37   IIGGLLFAICAGIPFPLLGIVFGDLINDLNTVTCSSSDRATADLSSAVRAKVLYVIYITI  96
            +I  +L AI +G   P   +V G +++ L        D      +  V +  L ++ + +
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLL------PDGDPETQALNVYS--LALLLLGL  52

Query  97   ANFCFIYAHSTCWCLVSERLARRYRRRYFESIIKQEAKFIESLPSGDVVSRLVSDIELVQ  156
            A F   +  S       ERL+RR RR+ F+ I++Q   F ++   G+++SRL +D   ++
Sbjct  53   AQFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIR  112

Query  157  SGTSEKVGLVISTLSYFVAAYVVAFIKVPKIAGMLVSVVPCFFLMALGGGHYIKKFAGRL  216
             G  EK+GL+  +L+  V   +V F    K+  +L++V+P + L++      ++K + + 
Sbjct  113  DGLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKE  172

Query  217  AEKVNAATSIASSSLSHLTLVHAFNANDRLEKRFAGYLLQSRKDAVRKATTHAAQLGCLY  276
             + V  A+S+A  SLS +  V AF   +   +++   L ++ K  ++KA  +    G   
Sbjct  173  QKAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQ  232

Query  277  FIAYSANALAFWEGSQMISKSVADGNSGTSVGAVYTVIFVLI  318
            FI Y + ALA W G+ ++     + + G  V   +  +F  +
Sbjct  233  FIGYLSYALALWFGAYLVISG--ELSVGDLV--AFLSLFAQL  270


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 132 bits (333),  Expect = 5e-36, Method: Composition-based stats.
 Identities = 58/194 (30%), Positives = 87/194 (45%), Gaps = 45/194 (23%)

Query  390  LQGVTFNIPPKKHTAIVGPSGGGKSTVVALLERFYDPDSGDVLIGDKNFRDINVRYLRGN  449
            L+ V+  + P +  A+VGP+G GKST++ L+     P  G +L+  ++  D   + LR  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  450  IGYVQQEPSLLDR-TILENIAYGLVSSAMERHQRLAPFILDSSLPDLAEKIREGLTEKEA  508
            IGYV Q+P L  R T+ EN+  GL+   + + ++ A                        
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDA------------------------  96

Query  509  LREYDSCVTEIVDLVKEAAANANALGFIEALPYGFATNVGTAGNQLSGGQKQRIALARAL  568
                             A      LG  +         VG     LSGGQ+QR+A+ARAL
Sbjct  97   ----------------RAEEALEKLGLGDLA----DRPVGERPGTLSGGQRQRVAIARAL  136

Query  569  VREPCLLILDEATA  582
            + +P LL+LDE TA
Sbjct  137  LTKPKLLLLDEPTA  150


 Score = 128 bits (325),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 56/157 (36%), Positives = 78/157 (50%), Gaps = 11/157 (7%)

Query  1118  LKGLNIDIKPGQFCALVGPSGSGKSTTFAMLERFYRPNAGAVVIDGVDVTRQVGTEFRDD  1177
             LK +++ + PG+  ALVGP+G+GKST   ++     P  G +++DG D+T       R +
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1178  IALVPQQNILF-EGTVAFNVALGAC---PGHEPTQEEIEEACRMANIHDVIMTLPQGYQT  1233
             I  V Q   LF   TV  N+ LG               EEA     + D+          
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGER--  118

Query  1234  MCSHDGKQFSGGQRQRLSIARALVRKPRLLLLDESTS  1270
                      SGGQRQR++IARAL+ KP+LLLLDE T+
Sbjct  119   -----PGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.321    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1715243600


Query= TCONS_00002158

Length=1344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  145     3e-39
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  132     5e-36


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 145 bits (368),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 72/277 (26%), Positives = 135/277 (49%), Gaps = 6/277 (2%)

Query  745   VLLGLAMSVIIGGSYSAEAIVFGHTVGSLSPCRSAEAISRDGNLYGLLFFILALVEFGAN  804
             ++L + ++++ G    A  +V G  +  L P    E  ++  N+Y L   +L L +F  +
Sbjct  1     LILAILLAILSGAISPAFPLVLGRILDVLLPDGDPE--TQALNVYSLALLLLGLAQFILS  58

Query  805   VVGGCAFGWAADKVLYRIRVLSLRSLLGQTVKWHESEDRTPGTLLTYITGDASALGGITG  864
              +         +++  R+R    + +L Q + + +    + G LL+ +T D S +    G
Sbjct  59    FLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFD--TNSVGELLSRLTNDTSKIRDGLG  116

Query  865   TTIGLLLATAVNLIGGLVISFSIAWKITIVLFPTIPVLLVSGMMKLRVQKQLAERHQKAF  924
               +GLL  +   ++GG+++ F   WK+T+VL   +P+ ++   +  ++ ++L+ + QKA 
Sbjct  117   EKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAV  176

Query  925   AKATAVTIEAVDNIRAVSAFSLEKQSYQVYGRALRGPYRATIKATFHGNAWLALAFSISN  984
             AKA++V  E++  IR V AF  E+   + Y +AL    +A IK          +   I  
Sbjct  177   AKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGY  236

Query  985   LVYALAYWWGSKQIAEGRYS--QTQFFIVMPALLFST  1019
             L YALA W+G+  +  G  S      F+ + A LF  
Sbjct  237   LSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273


 Score = 133 bits (338),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 72/282 (26%), Positives = 138/282 (49%), Gaps = 12/282 (4%)

Query  37   IIGGLLFAICAGIPFPLLGIVFGDLINDLNTVTCSSSDRATADLSSAVRAKVLYVIYITI  96
            +I  +L AI +G   P   +V G +++ L        D      +  V +  L ++ + +
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLL------PDGDPETQALNVYS--LALLLLGL  52

Query  97   ANFCFIYAHSTCWCLVSERLARRYRRRYFESIIKQEAKFIESLPSGDVVSRLVSDIELVQ  156
            A F   +  S       ERL+RR RR+ F+ I++Q   F ++   G+++SRL +D   ++
Sbjct  53   AQFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIR  112

Query  157  SGTSEKVGLVISTLSYFVAAYVVAFIKVPKIAGMLVSVVPCFFLMALGGGHYIKKFAGRL  216
             G  EK+GL+  +L+  V   +V F    K+  +L++V+P + L++      ++K + + 
Sbjct  113  DGLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKE  172

Query  217  AEKVNAATSIASSSLSHLTLVHAFNANDRLEKRFAGYLLQSRKDAVRKATTHAAQLGCLY  276
             + V  A+S+A  SLS +  V AF   +   +++   L ++ K  ++KA  +    G   
Sbjct  173  QKAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQ  232

Query  277  FIAYSANALAFWEGSQMISKSVADGNSGTSVGAVYTVIFVLI  318
            FI Y + ALA W G+ ++     + + G  V   +  +F  +
Sbjct  233  FIGYLSYALALWFGAYLVISG--ELSVGDLV--AFLSLFAQL  270


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 132 bits (333),  Expect = 5e-36, Method: Composition-based stats.
 Identities = 58/194 (30%), Positives = 87/194 (45%), Gaps = 45/194 (23%)

Query  390  LQGVTFNIPPKKHTAIVGPSGGGKSTVVALLERFYDPDSGDVLIGDKNFRDINVRYLRGN  449
            L+ V+  + P +  A+VGP+G GKST++ L+     P  G +L+  ++  D   + LR  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  450  IGYVQQEPSLLDR-TILENIAYGLVSSAMERHQRLAPFILDSSLPDLAEKIREGLTEKEA  508
            IGYV Q+P L  R T+ EN+  GL+   + + ++ A                        
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDA------------------------  96

Query  509  LREYDSCVTEIVDLVKEAAANANALGFIEALPYGFATNVGTAGNQLSGGQKQRIALARAL  568
                             A      LG  +         VG     LSGGQ+QR+A+ARAL
Sbjct  97   ----------------RAEEALEKLGLGDLA----DRPVGERPGTLSGGQRQRVAIARAL  136

Query  569  VREPCLLILDEATA  582
            + +P LL+LDE TA
Sbjct  137  LTKPKLLLLDEPTA  150


 Score = 128 bits (325),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 56/157 (36%), Positives = 78/157 (50%), Gaps = 11/157 (7%)

Query  1118  LKGLNIDIKPGQFCALVGPSGSGKSTTFAMLERFYRPNAGAVVIDGVDVTRQVGTEFRDD  1177
             LK +++ + PG+  ALVGP+G+GKST   ++     P  G +++DG D+T       R +
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1178  IALVPQQNILF-EGTVAFNVALGAC---PGHEPTQEEIEEACRMANIHDVIMTLPQGYQT  1233
             I  V Q   LF   TV  N+ LG               EEA     + D+          
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGER--  118

Query  1234  MCSHDGKQFSGGQRQRLSIARALVRKPRLLLLDESTS  1270
                      SGGQRQR++IARAL+ KP+LLLLDE T+
Sbjct  119   -----PGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.321    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0785    0.140     1.90     42.6     43.6 

Effective search space used: 1715243600


Query= TCONS_00002159

Length=836
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  149     6e-41
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  127     8e-35


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 149 bits (379),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 72/277 (26%), Positives = 135/277 (49%), Gaps = 6/277 (2%)

Query  269  VLLGLAMSVIIGGSYSAEAIVFGHTVGSLSPCRSAEAISRDGNLYGLLFFILALVEFGAN  328
            ++L + ++++ G    A  +V G  +  L P    E  ++  N+Y L   +L L +F  +
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLLPDGDPE--TQALNVYSLALLLLGLAQFILS  58

Query  329  VVGGCAFGWAADKVLYRIRVLSLRSLLGQTVKWHESEDRTPGTLLTYITGDASALGGITG  388
             +         +++  R+R    + +L Q + + +    + G LL+ +T D S +    G
Sbjct  59   FLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFD--TNSVGELLSRLTNDTSKIRDGLG  116

Query  389  TTIGLLLATAVNLIGGLVISFSIAWKITIVLFPTIPVLLVSGMMKLRVQKQLAERHQKAF  448
              +GLL  +   ++GG+++ F   WK+T+VL   +P+ ++   +  ++ ++L+ + QKA 
Sbjct  117  EKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAV  176

Query  449  AKATAVTIEAVDNIRAVSAFSLEKQSYQVYGRALRGPYRATIKATFHGNAWLALAFSISN  508
            AKA++V  E++  IR V AF  E+   + Y +AL    +A IK          +   I  
Sbjct  177  AKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGY  236

Query  509  LVYALAYWWGSKQIAEGRYS--QTQFFIVMPALLFST  543
            L YALA W+G+  +  G  S      F+ + A LF  
Sbjct  237  LSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 127 bits (322),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 56/157 (36%), Positives = 78/157 (50%), Gaps = 11/157 (7%)

Query  642  LKGLNIDIKPGQFCALVGPSGSGKSTTFAMLERFYRPNAGAVVIDGVDVTRQVGTEFRDD  701
            LK +++ + PG+  ALVGP+G+GKST   ++     P  G +++DG D+T       R +
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  702  IALVPQQNILF-EGTVAFNVALGAC---PGHEPTQEEIEEACRMANIHDVIMTLPQGYQT  757
            I  V Q   LF   TV  N+ LG               EEA     + D+          
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGER--  118

Query  758  MCSHDGKQFSGGQRQRLSIARALVRKPRLLLLDESTS  794
                     SGGQRQR++IARAL+ KP+LLLLDE T+
Sbjct  119  -----PGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 66.5 bits (163),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 39/87 (45%), Gaps = 13/87 (15%)

Query  20   AEKIREGLTEKEALREYDSCVTEIVDLVKEAAANANALGFIEALPYGFATNVGTAGNQLS  79
             E +R GL  K   +               A      LG  +         VG     LS
Sbjct  77   RENLRLGLLLKGLSKREKDA---------RAEEALEKLGLGDLA----DRPVGERPGTLS  123

Query  80   GGQKQRIALARALVREPCLLILDEATA  106
            GGQ+QR+A+ARAL+ +P LL+LDE TA
Sbjct  124  GGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.319    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1063715874


Query= TCONS_00002161

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00002162

Length=406


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00007537

Length=406


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00002163

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase. This...  65.8    8e-13


>CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase.  This family 
includes a variety of carbohydrate and pyrimidine kinases.
Length=294

 Score = 65.8 bits (161),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 31/121 (26%), Positives = 49/121 (40%), Gaps = 13/121 (11%)

Query  101  PVPDLCTPEEQDRFLEAARVVDVVSPNELELGMMFGQPGWTEDSEFGRDVVTRILTSGIG  160
            P         ++  LE   + D++ PNE EL  + G      +       + ++L  GI 
Sbjct  161  PNLLDPLGAAREALLELLPLADLLKPNEEELEALTGAKLDDIEE--ALAALHKLLAKGI-  217

Query  161  PESEGHLVIRAGKDGSYTFSRKERIWLPAYHQPGTSGVTAVVDPTGAGNSFLGALAQGLI  220
                  +++  G DG+              H P    V  VVD TGAG+SF+G    GL+
Sbjct  218  ----KTVIVTLGADGALVVEGDG-----EVHVPAVPKVK-VVDTTGAGDSFVGGFLAGLL  267

Query  221  S  221
            +
Sbjct  268  A  268



Lambda      K        H        a         alpha
   0.319    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00007538

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462532 pfam08603, CAP_C, Adenylate cyclase associated (CAP) C...  251     3e-82
CDD:460113 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N...  73.6    5e-17


>CDD:462532 pfam08603, CAP_C, Adenylate cyclase associated (CAP) C terminal. 
 
Length=157

 Score = 251 bits (643),  Expect = 3e-82, Method: Composition-based stats.
 Identities = 77/159 (48%), Positives = 110/159 (69%), Gaps = 2/159 (1%)

Query  366  KPPRKELEGNKWLLENFDNPGGIIEISAQQNQSILISRCNKTIVKVNNKANAISIDNCNG  425
            KPP+KELEGNKW++EN +N   I+    + NQS+ I  C  + +++  K NAIS+DNC  
Sbjct  1    KPPKKELEGNKWIVENQENNKPIVIEDTEMNQSVYIFNCKNSTIQIKGKVNAISLDNCKK  60

Query  426  LSIIVDSLVSSLDVIKSAKFALQIDGVVPTLLLDQVDGATIYLGQQSLATEVFSSKCTAV  485
             S++VDSLVSS++VI    F +Q+ G VPT+ +D+ DG  IYL ++SL TE+ +SK + +
Sbjct  61   TSVVVDSLVSSVEVINCQSFQVQVLGKVPTISIDKTDGGQIYLSKESLDTEIVTSKSSEM  120

Query  486  NVMLPPKEGTDDDTKECPVPEQIKSYVKDGVLVSEIVEH  524
            NV +P  E  D D  E P+PEQ K+ +KDG LV+E+VEH
Sbjct  121  NVNVPGGE--DGDYVEFPIPEQFKTTIKDGKLVTEVVEH  157


>CDD:460113 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal. 
 
Length=72

 Score = 73.6 bits (181),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 31/80 (39%), Positives = 39/80 (49%), Gaps = 9/80 (11%)

Query  11  TTLIKRLEAATSRLEDMAMSLDDPHSPKHVGSATATPEPTAPVPVNTVAPPAPPAAPSLP  70
           TTL+KRLEAATSRLED+A+S     +     S+       A                  P
Sbjct  1   TTLVKRLEAATSRLEDIAISASGSSASSSASSSGGGAPSAAAPAPAA---------SPAP  51

Query  71  PQIEDFDALINGDVRSFVDL  90
           P +E FD LI+G V  FV+L
Sbjct  52  PSVEAFDELISGPVAPFVEL  71



Lambda      K        H        a         alpha
   0.312    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00007539

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00002165

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462532 pfam08603, CAP_C, Adenylate cyclase associated (CAP) C...  251     3e-82
CDD:460113 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N...  73.6    5e-17


>CDD:462532 pfam08603, CAP_C, Adenylate cyclase associated (CAP) C terminal. 
 
Length=157

 Score = 251 bits (643),  Expect = 3e-82, Method: Composition-based stats.
 Identities = 77/159 (48%), Positives = 110/159 (69%), Gaps = 2/159 (1%)

Query  366  KPPRKELEGNKWLLENFDNPGGIIEISAQQNQSILISRCNKTIVKVNNKANAISIDNCNG  425
            KPP+KELEGNKW++EN +N   I+    + NQS+ I  C  + +++  K NAIS+DNC  
Sbjct  1    KPPKKELEGNKWIVENQENNKPIVIEDTEMNQSVYIFNCKNSTIQIKGKVNAISLDNCKK  60

Query  426  LSIIVDSLVSSLDVIKSAKFALQIDGVVPTLLLDQVDGATIYLGQQSLATEVFSSKCTAV  485
             S++VDSLVSS++VI    F +Q+ G VPT+ +D+ DG  IYL ++SL TE+ +SK + +
Sbjct  61   TSVVVDSLVSSVEVINCQSFQVQVLGKVPTISIDKTDGGQIYLSKESLDTEIVTSKSSEM  120

Query  486  NVMLPPKEGTDDDTKECPVPEQIKSYVKDGVLVSEIVEH  524
            NV +P  E  D D  E P+PEQ K+ +KDG LV+E+VEH
Sbjct  121  NVNVPGGE--DGDYVEFPIPEQFKTTIKDGKLVTEVVEH  157


>CDD:460113 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal. 
 
Length=72

 Score = 73.6 bits (181),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 31/80 (39%), Positives = 39/80 (49%), Gaps = 9/80 (11%)

Query  11  TTLIKRLEAATSRLEDMAMSLDDPHSPKHVGSATATPEPTAPVPVNTVAPPAPPAAPSLP  70
           TTL+KRLEAATSRLED+A+S     +     S+       A                  P
Sbjct  1   TTLVKRLEAATSRLEDIAISASGSSASSSASSSGGGAPSAAAPAPAA---------SPAP  51

Query  71  PQIEDFDALINGDVRSFVDL  90
           P +E FD LI+G V  FV+L
Sbjct  52  PSVEAFDELISGPVAPFVEL  71



Lambda      K        H        a         alpha
   0.312    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00007540

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462532 pfam08603, CAP_C, Adenylate cyclase associated (CAP) C...  247     2e-82


>CDD:462532 pfam08603, CAP_C, Adenylate cyclase associated (CAP) C terminal. 
 
Length=157

 Score = 247 bits (632),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 77/159 (48%), Positives = 110/159 (69%), Gaps = 2/159 (1%)

Query  234  KPPRKELEGNKWLLENFDNPGGIIEISAQQNQSILISRCNKTIVKVNNKANAISIDNCNG  293
            KPP+KELEGNKW++EN +N   I+    + NQS+ I  C  + +++  K NAIS+DNC  
Sbjct  1    KPPKKELEGNKWIVENQENNKPIVIEDTEMNQSVYIFNCKNSTIQIKGKVNAISLDNCKK  60

Query  294  LSIIVDSLVSSLDVIKSAKFALQIDGVVPTLLLDQVDGATIYLGQQSLATEVFSSKCTAV  353
             S++VDSLVSS++VI    F +Q+ G VPT+ +D+ DG  IYL ++SL TE+ +SK + +
Sbjct  61   TSVVVDSLVSSVEVINCQSFQVQVLGKVPTISIDKTDGGQIYLSKESLDTEIVTSKSSEM  120

Query  354  NVMLPPKEGTDDDTKECPVPEQIKSYVKDGVLVSEIVEH  392
            NV +P  E  D D  E P+PEQ K+ +KDG LV+E+VEH
Sbjct  121  NVNVPGGE--DGDYVEFPIPEQFKTTIKDGKLVTEVVEH  157



Lambda      K        H        a         alpha
   0.312    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00002166

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462532 pfam08603, CAP_C, Adenylate cyclase associated (CAP) C...  251     3e-82
CDD:460113 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N...  73.6    5e-17


>CDD:462532 pfam08603, CAP_C, Adenylate cyclase associated (CAP) C terminal. 
 
Length=157

 Score = 251 bits (643),  Expect = 3e-82, Method: Composition-based stats.
 Identities = 77/159 (48%), Positives = 110/159 (69%), Gaps = 2/159 (1%)

Query  366  KPPRKELEGNKWLLENFDNPGGIIEISAQQNQSILISRCNKTIVKVNNKANAISIDNCNG  425
            KPP+KELEGNKW++EN +N   I+    + NQS+ I  C  + +++  K NAIS+DNC  
Sbjct  1    KPPKKELEGNKWIVENQENNKPIVIEDTEMNQSVYIFNCKNSTIQIKGKVNAISLDNCKK  60

Query  426  LSIIVDSLVSSLDVIKSAKFALQIDGVVPTLLLDQVDGATIYLGQQSLATEVFSSKCTAV  485
             S++VDSLVSS++VI    F +Q+ G VPT+ +D+ DG  IYL ++SL TE+ +SK + +
Sbjct  61   TSVVVDSLVSSVEVINCQSFQVQVLGKVPTISIDKTDGGQIYLSKESLDTEIVTSKSSEM  120

Query  486  NVMLPPKEGTDDDTKECPVPEQIKSYVKDGVLVSEIVEH  524
            NV +P  E  D D  E P+PEQ K+ +KDG LV+E+VEH
Sbjct  121  NVNVPGGE--DGDYVEFPIPEQFKTTIKDGKLVTEVVEH  157


>CDD:460113 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal. 
 
Length=72

 Score = 73.6 bits (181),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 31/80 (39%), Positives = 39/80 (49%), Gaps = 9/80 (11%)

Query  11  TTLIKRLEAATSRLEDMAMSLDDPHSPKHVGSATATPEPTAPVPVNTVAPPAPPAAPSLP  70
           TTL+KRLEAATSRLED+A+S     +     S+       A                  P
Sbjct  1   TTLVKRLEAATSRLEDIAISASGSSASSSASSSGGGAPSAAAPAPAA---------SPAP  51

Query  71  PQIEDFDALINGDVRSFVDL  90
           P +E FD LI+G V  FV+L
Sbjct  52  PSVEAFDELISGPVAPFVEL  71



Lambda      K        H        a         alpha
   0.312    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00007541

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462532 pfam08603, CAP_C, Adenylate cyclase associated (CAP) C...  239     7e-82


>CDD:462532 pfam08603, CAP_C, Adenylate cyclase associated (CAP) C terminal. 
 
Length=157

 Score = 239 bits (613),  Expect = 7e-82, Method: Composition-based stats.
 Identities = 77/159 (48%), Positives = 110/159 (69%), Gaps = 2/159 (1%)

Query  70   KPPRKELEGNKWLLENFDNPGGIIEISAQQNQSILISRCNKTIVKVNNKANAISIDNCNG  129
            KPP+KELEGNKW++EN +N   I+    + NQS+ I  C  + +++  K NAIS+DNC  
Sbjct  1    KPPKKELEGNKWIVENQENNKPIVIEDTEMNQSVYIFNCKNSTIQIKGKVNAISLDNCKK  60

Query  130  LSIIVDSLVSSLDVIKSAKFALQIDGVVPTLLLDQVDGATIYLGQQSLATEVFSSKCTAV  189
             S++VDSLVSS++VI    F +Q+ G VPT+ +D+ DG  IYL ++SL TE+ +SK + +
Sbjct  61   TSVVVDSLVSSVEVINCQSFQVQVLGKVPTISIDKTDGGQIYLSKESLDTEIVTSKSSEM  120

Query  190  NVMLPPKEGTDDDTKECPVPEQIKSYVKDGVLVSEIVEH  228
            NV +P  E  D D  E P+PEQ K+ +KDG LV+E+VEH
Sbjct  121  NVNVPGGE--DGDYVEFPIPEQFKTTIKDGKLVTEVVEH  157



Lambda      K        H        a         alpha
   0.311    0.129    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00002167

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrog...  193     2e-62


>CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase. 
 
Length=346

 Score = 193 bits (493),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 72/161 (45%), Positives = 102/161 (63%), Gaps = 8/161 (5%)

Query  1    MKMSDGLFLNTAREIAKEFPDIEFDAELLDNSCLKIVTDPTPYNDKVLVMPNLYGDILSD  60
            +K SD            E+PD+E + +L+DN+ +++V +P+ ++  V+V PNL+GDILSD
Sbjct  189  LKSSDLWRKIVTEVAKAEYPDVELEHQLVDNAAMQLVKNPSQFD--VIVTPNLFGDILSD  246

Query  61   MCAGLIGGLGLTPSGNIGDEC-SIFEAVHGSAPDIAGKGLANPTALLLSSIMMLQH-MGL  118
              + L G LGL PS ++G     IFE VHGSAPDIAGKG+ANP A +LS+ MML++ +GL
Sbjct  247  EASMLTGSLGLLPSASLGANGFGIFEPVHGSAPDIAGKGIANPIATILSAAMMLRYSLGL  306

Query  119  HEHAARIQKATFDTLAEGKTLTGDLGGKA---KTHEYAEAI  156
             + A +I+ A    L  G   TGDL G A    T E+ EA+
Sbjct  307  EDAADKIEAAVLKVLESGI-RTGDLAGSATYVSTSEFGEAV  346



Lambda      K        H        a         alpha
   0.318    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00007542

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrog...  368     2e-127


>CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase. 
 
Length=346

 Score = 368 bits (948),  Expect = 2e-127, Method: Composition-based stats.
 Identities = 136/349 (39%), Positives = 195/349 (56%), Gaps = 26/349 (7%)

Query  56   TVTLIEGDGIGPEIAQSVKDIFAAA--KAPIK--WEPVDVTPILKDG-KTTIPEEAIKSV  110
             + ++ GDGIGPE+  +   +  AA  KAP++  +E  DV     D     +P+E +++ 
Sbjct  1    KIAVLPGDGIGPEVMAAALKVLKAALEKAPLEFEFEERDVGGAAIDETGEPLPDETLEAC  60

Query  111  QKNYVALKGPLATPVG--KGHVSLN--LTLRRTFNLFANLRPCRSVA--GYKTPY----D  160
            +K    L G +  P     G    N  L LR+   LFANLRP +     G  +P     +
Sbjct  61   KKADAVLLGAVGGPKWDPAGVRPENGLLALRKELGLFANLRPAKVFPPLGDASPLKNEVE  120

Query  161  NVDTVLIRENTEGEYSGIEHVVVDG---VVQSIKLITREASERVLRFAFQYARSVNKKKV  217
             VD V++RE T G Y GIE  +      V    KL +R+  ER+ R AF+ AR   +KKV
Sbjct  121  GVDIVIVRELTGGIYFGIEKGIKGSGNEVAVDTKLYSRDEIERIARVAFELARKRGRKKV  180

Query  218  RVVHKATIMKMSDGLFLNTAREIAKEFPDIEFDAELLDNSCLKIVTDPTPYNDKVLVMPN  277
              V KA ++K SD            E+PD+E + +L+DN+ +++V +P+ ++  V+V PN
Sbjct  181  TSVDKANVLKSSDLWRKIVTEVAKAEYPDVELEHQLVDNAAMQLVKNPSQFD--VIVTPN  238

Query  278  LYGDILSDMCAGLIGGLGLTPSGNIGDEC-SIFEAVHGSAPDIAGKGLANPTALLLSSIM  336
            L+GDILSD  + L G LGL PS ++G     IFE VHGSAPDIAGKG+ANP A +LS+ M
Sbjct  239  LFGDILSDEASMLTGSLGLLPSASLGANGFGIFEPVHGSAPDIAGKGIANPIATILSAAM  298

Query  337  MLQH-MGLHEHAARIQKATFDTLAEGKTLTGDLGGKA---KTHEYAEAI  381
            ML++ +GL + A +I+ A    L  G   TGDL G A    T E+ EA+
Sbjct  299  MLRYSLGLEDAADKIEAAVLKVLESGI-RTGDLAGSATYVSTSEFGEAV  346



Lambda      K        H        a         alpha
   0.318    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 459789232


Query= TCONS_00002168

Length=367
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrog...  353     1e-121


>CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase. 
 
Length=346

 Score = 353 bits (907),  Expect = 1e-121, Method: Composition-based stats.
 Identities = 126/328 (38%), Positives = 183/328 (56%), Gaps = 22/328 (7%)

Query  56   TVTLIEGDGIGPEIAQSVKDIFAAA--KAPIK--WEPVDVTPILKDG-KTTIPEEAIKSV  110
             + ++ GDGIGPE+  +   +  AA  KAP++  +E  DV     D     +P+E +++ 
Sbjct  1    KIAVLPGDGIGPEVMAAALKVLKAALEKAPLEFEFEERDVGGAAIDETGEPLPDETLEAC  60

Query  111  QKNYVALKGPLATPVG--KGHVSLN--LTLRRTFNLFANLRPCRSVA--GYKTPY----D  160
            +K    L G +  P     G    N  L LR+   LFANLRP +     G  +P     +
Sbjct  61   KKADAVLLGAVGGPKWDPAGVRPENGLLALRKELGLFANLRPAKVFPPLGDASPLKNEVE  120

Query  161  NVDTVLIRENTEGEYSGIEHVVVDG---VVQSIKLITREASERVLRFAFQYARSVNKKKV  217
             VD V++RE T G Y GIE  +      V    KL +R+  ER+ R AF+ AR   +KKV
Sbjct  121  GVDIVIVRELTGGIYFGIEKGIKGSGNEVAVDTKLYSRDEIERIARVAFELARKRGRKKV  180

Query  218  RVVHKATIMKMSDGLFLNTAREIAKEFPDIEFDAELLDNSCLKIVTDPTPYNDKVLVMPN  277
              V KA ++K SD            E+PD+E + +L+DN+ +++V +P+ ++  V+V PN
Sbjct  181  TSVDKANVLKSSDLWRKIVTEVAKAEYPDVELEHQLVDNAAMQLVKNPSQFD--VIVTPN  238

Query  278  LYGDILSDMCAGLIGGLGLTPSGNIGDEC-SIFEAVHGSAPDIAGKGLANPTALLLSSIM  336
            L+GDILSD  + L G LGL PS ++G     IFE VHGSAPDIAGKG+ANP A +LS+ M
Sbjct  239  LFGDILSDEASMLTGSLGLLPSASLGANGFGIFEPVHGSAPDIAGKGIANPIATILSAAM  298

Query  337  MLQH-MGLHEHAARIQKATFDTLAEGKV  363
            ML++ +GL + A +I+ A    L  G  
Sbjct  299  MLRYSLGLEDAADKIEAAVLKVLESGIR  326



Lambda      K        H        a         alpha
   0.318    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00002169

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrog...  368     2e-127


>CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase. 
 
Length=346

 Score = 368 bits (948),  Expect = 2e-127, Method: Composition-based stats.
 Identities = 136/349 (39%), Positives = 195/349 (56%), Gaps = 26/349 (7%)

Query  56   TVTLIEGDGIGPEIAQSVKDIFAAA--KAPIK--WEPVDVTPILKDG-KTTIPEEAIKSV  110
             + ++ GDGIGPE+  +   +  AA  KAP++  +E  DV     D     +P+E +++ 
Sbjct  1    KIAVLPGDGIGPEVMAAALKVLKAALEKAPLEFEFEERDVGGAAIDETGEPLPDETLEAC  60

Query  111  QKNYVALKGPLATPVG--KGHVSLN--LTLRRTFNLFANLRPCRSVA--GYKTPY----D  160
            +K    L G +  P     G    N  L LR+   LFANLRP +     G  +P     +
Sbjct  61   KKADAVLLGAVGGPKWDPAGVRPENGLLALRKELGLFANLRPAKVFPPLGDASPLKNEVE  120

Query  161  NVDTVLIRENTEGEYSGIEHVVVDG---VVQSIKLITREASERVLRFAFQYARSVNKKKV  217
             VD V++RE T G Y GIE  +      V    KL +R+  ER+ R AF+ AR   +KKV
Sbjct  121  GVDIVIVRELTGGIYFGIEKGIKGSGNEVAVDTKLYSRDEIERIARVAFELARKRGRKKV  180

Query  218  RVVHKATIMKMSDGLFLNTAREIAKEFPDIEFDAELLDNSCLKIVTDPTPYNDKVLVMPN  277
              V KA ++K SD            E+PD+E + +L+DN+ +++V +P+ ++  V+V PN
Sbjct  181  TSVDKANVLKSSDLWRKIVTEVAKAEYPDVELEHQLVDNAAMQLVKNPSQFD--VIVTPN  238

Query  278  LYGDILSDMCAGLIGGLGLTPSGNIGDEC-SIFEAVHGSAPDIAGKGLANPTALLLSSIM  336
            L+GDILSD  + L G LGL PS ++G     IFE VHGSAPDIAGKG+ANP A +LS+ M
Sbjct  239  LFGDILSDEASMLTGSLGLLPSASLGANGFGIFEPVHGSAPDIAGKGIANPIATILSAAM  298

Query  337  MLQH-MGLHEHAARIQKATFDTLAEGKTLTGDLGGKA---KTHEYAEAI  381
            ML++ +GL + A +I+ A    L  G   TGDL G A    T E+ EA+
Sbjct  299  MLRYSLGLEDAADKIEAAVLKVLESGI-RTGDLAGSATYVSTSEFGEAV  346



Lambda      K        H        a         alpha
   0.318    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 459789232


Query= TCONS_00002171

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrog...  368     1e-127


>CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase. 
 
Length=346

 Score = 368 bits (948),  Expect = 1e-127, Method: Composition-based stats.
 Identities = 133/349 (38%), Positives = 192/349 (55%), Gaps = 26/349 (7%)

Query  56   TVTLIEGDGIGPEIAQSVKDIFAAAK----VTIKWEPVDVTPILKDG-KTTIPEEAIKSV  110
             + ++ GDGIGPE+  +   +  AA     +  ++E  DV     D     +P+E +++ 
Sbjct  1    KIAVLPGDGIGPEVMAAALKVLKAALEKAPLEFEFEERDVGGAAIDETGEPLPDETLEAC  60

Query  111  QKNYVALKGPLATPVG--KGHVSLN--LTLRRTFNLFANLRPCRSVA--GYKTPY----D  160
            +K    L G +  P     G    N  L LR+   LFANLRP +     G  +P     +
Sbjct  61   KKADAVLLGAVGGPKWDPAGVRPENGLLALRKELGLFANLRPAKVFPPLGDASPLKNEVE  120

Query  161  NVDTVLIRENTEGEYSGIEHVVVDG---VVQSIKLITREASERVLRFAFQYARSVNKKKV  217
             VD V++RE T G Y GIE  +      V    KL +R+  ER+ R AF+ AR   +KKV
Sbjct  121  GVDIVIVRELTGGIYFGIEKGIKGSGNEVAVDTKLYSRDEIERIARVAFELARKRGRKKV  180

Query  218  RVVHKATIMKMSDGLFLNTAREIAKEFPDIEFDAELLDNSCLKIVTDPTPYNDKVLVMPN  277
              V KA ++K SD            E+PD+E + +L+DN+ +++V +P+ ++  V+V PN
Sbjct  181  TSVDKANVLKSSDLWRKIVTEVAKAEYPDVELEHQLVDNAAMQLVKNPSQFD--VIVTPN  238

Query  278  LYGDILSDMCAGLIGGLGLTPSGNIGDEC-SIFEAVHGSAPDIAGKGLANPTALLLSSIM  336
            L+GDILSD  + L G LGL PS ++G     IFE VHGSAPDIAGKG+ANP A +LS+ M
Sbjct  239  LFGDILSDEASMLTGSLGLLPSASLGANGFGIFEPVHGSAPDIAGKGIANPIATILSAAM  298

Query  337  MLQH-MGLHEHAARIQKATFDTLAEGKTLTGDLGGKA---KTHEYAEAI  381
            ML++ +GL + A +I+ A    L  G   TGDL G A    T E+ EA+
Sbjct  299  MLRYSLGLEDAADKIEAAVLKVLESGI-RTGDLAGSATYVSTSEFGEAV  346



Lambda      K        H        a         alpha
   0.318    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 459789232


Query= TCONS_00002170

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrog...  365     4e-126


>CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase. 
 
Length=346

 Score = 365 bits (939),  Expect = 4e-126, Method: Composition-based stats.
 Identities = 136/349 (39%), Positives = 195/349 (56%), Gaps = 26/349 (7%)

Query  56   TVTLIEGDGIGPEIAQSVKDIFAAA--KAPIK--WEPVDVTPILKDG-KTTIPEEAIKSV  110
             + ++ GDGIGPE+  +   +  AA  KAP++  +E  DV     D     +P+E +++ 
Sbjct  1    KIAVLPGDGIGPEVMAAALKVLKAALEKAPLEFEFEERDVGGAAIDETGEPLPDETLEAC  60

Query  111  QKNYVALKGPLAVPVG--KGHVSLN--LTLRRTFNLFANLRPCRSVA--GYKTPY----D  160
            +K    L G +  P     G    N  L LR+   LFANLRP +     G  +P     +
Sbjct  61   KKADAVLLGAVGGPKWDPAGVRPENGLLALRKELGLFANLRPAKVFPPLGDASPLKNEVE  120

Query  161  NVDTVLIRENTEGEYSGIEHVVVDG---VVQSIKLITREASERVLRFAFQYARSVNKKKV  217
             VD V++RE T G Y GIE  +      V    KL +R+  ER+ R AF+ AR   +KKV
Sbjct  121  GVDIVIVRELTGGIYFGIEKGIKGSGNEVAVDTKLYSRDEIERIARVAFELARKRGRKKV  180

Query  218  RVVHKATIMKMSDGLFLNTAREIAKEFPDIEFDAELLDNSCLKIVTDPTPYNDKVLVMPN  277
              V KA ++K SD            E+PD+E + +L+DN+ +++V +P+ ++  V+V PN
Sbjct  181  TSVDKANVLKSSDLWRKIVTEVAKAEYPDVELEHQLVDNAAMQLVKNPSQFD--VIVTPN  238

Query  278  LYGDILSDMCAGLIGGLGLTPSGNIGDEC-SIFEAVHGSAPDIAGKGLANPTALLLSSIM  336
            L+GDILSD  + L G LGL PS ++G     IFE VHGSAPDIAGKG+ANP A +LS+ M
Sbjct  239  LFGDILSDEASMLTGSLGLLPSASLGANGFGIFEPVHGSAPDIAGKGIANPIATILSAAM  298

Query  337  MLQH-MGLHEHAARIQKATFDTLAEGKVLTGDLGGKA---KTHEYAEAI  381
            ML++ +GL + A +I+ A    L  G   TGDL G A    T E+ EA+
Sbjct  299  MLRYSLGLEDAADKIEAAVLKVLESGI-RTGDLAGSATYVSTSEFGEAV  346



Lambda      K        H        a         alpha
   0.318    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 459789232


Query= TCONS_00002172

Length=947
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461187 pfam04130, Spc97_Spc98, Spc97 / Spc98 family. The spin...  239     2e-72
CDD:465456 pfam17681, GCP_N_terminal, Gamma tubulin complex compo...  163     2e-45


>CDD:461187 pfam04130, Spc97_Spc98, Spc97 / Spc98 family.  The spindle pole 
body (SPB) functions as the microtubule-organising centre 
in yeast. Members of this family are spindle pole body (SBP) 
components such as Spc97 and Spc98 that form a complex with 
gamma-tubulin. This family of proteins includes the grip motif 
1 and grip moti 2. Members of this family all form components 
of the gamma-tubulin complex, GCP.
Length=297

 Score = 239 bits (613),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 108/370 (29%), Positives = 146/370 (39%), Gaps = 84/370 (23%)

Query  589  LRYHLTLQWRFQLLGDGFFASRLSHSLFDPEMESGERRSGVVRSGVHTGLRLGNRDTWPP  648
            L  HL    R+ LLG G F SRL  +LFD                            W P
Sbjct  1    LLDHLRALKRYLLLGQGDFISRLMDALFDEL--------------------------WKP  34

Query  649  ASSELRLVLIGLLSDCNMDERLDNSSNAEFLRERELPGGLSFSIRDLTDEEIVKCKDPHA  708
            ASS LR  L GLL +         SSNA+    R+LP        D+      +  DP +
Sbjct  35   ASSLLRHNLTGLLEEAI------RSSNAQ----RDLP--------DVLRRLDARL-DPDS  75

Query  709  IEALDFLRLEYTPSPVLETIITQRSLDQYDRLFKHLLRLIRMVSVVKGLIRDSTARSSLS  768
            +   DFL LEY     L  ++T  +L +Y RLF+ LLRL R+  V+  L R      S S
Sbjct  76   LGGWDFLTLEYKVPWPLSLVLTPEALTKYQRLFRFLLRLKRVEFVLSSLWRRRQMSGSRS  135

Query  769  GDTRSLFQRFRIDCQHFVLAVSDYCFHVGVGSSWQSFQATLSRIEYCLEQGDIDGVIEAA  828
                      R +  HFV  +  Y     +  SW+ F+  L          D+D +IEA 
Sbjct  136  VLWHRARL-LRQEMIHFVSQLQYYVMFEVIEPSWREFEEKLQ-----KAASDLDDLIEA-  188

Query  829  HSVAWLRRYHEDTLDQMLFALFLSKRHAEAAKLLEKIFGTILTFAP-----------LSR  877
                     HED LD++L   FL+       KLLE+I   IL FA             +R
Sbjct  189  ---------HEDFLDRILKKCFLTSPQQPLLKLLEEILSLILDFAEALDGLYLSVSESAR  239

Query  878  LDGLEGVRHGSEDTIVQLYTTFRKQTSAFVGYLRGLDGVKASSKFASRSRAEPISIFERL  937
             +  + +     + + +L   FRK+ S  +  LRGL      S               +L
Sbjct  240  AEAEDELPELERERLRRLEKQFRKKVSLLLKVLRGLKSHPDESHLR------------QL  287

Query  938  LVRLDMKRYY  947
            L+RLD   YY
Sbjct  288  LLRLDFNGYY  297


>CDD:465456 pfam17681, GCP_N_terminal, Gamma tubulin complex component N-terminal. 
 This is the N-terminal domain found in components 
of the gamma-tubulin complex proteins (GCPs). Family members 
include spindle pole body (SBP) components such as Spc97 and 
Spc98 which function as the microtubule-organizing center 
in yeast. Furthermore, family members such as human GCP4 (Gamma-tubulin 
complex component 4) have been structurally elucidated. 
Functional studies have shown that the N-terminal domain 
defines the functional identity of GCPs, suggesting that 
all GCPs are incorporated into the helix of gamma-tubulin 
small complexes (gTURCs) via lateral interactions between their 
N-terminal domains. Thereby, they define the direct neighbors 
and position the GCPs within the helical wall of gTuRC. 
Sequence alignment of human GCPs based on the GCP4 structure 
helped delineate conserved regions in the N- and C-terminal 
domains. In addition to the conserved sequences, the N-terminal 
domains carry specific insertions of various sizes depending 
on the GCP, i.e. internal insertions or N-terminal 
extensions. These insertions may equally contribute to the function 
of individual GCPs as they have been implied in specific 
interactions with regulatory or structural proteins. For 
instance, GCP6 carries a large internal insertion phosphorylated 
by Plk4 and containing a domain of interaction with keratins, 
whereas the N-terminal extension of GCP3 interacts 
with the recruitment protein MOZART1.
Length=298

 Score = 163 bits (416),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 62/259 (24%), Positives = 109/259 (42%), Gaps = 21/259 (8%)

Query  169  FHALFRLGLGWNSVLFRYNKQRKAFERVSDNIRVSGVSLAVVNGLTEEVLRCGTAMYNLR  228
               L     G +    R+++      R+ D+IR+ G+    +  L   +L  G     LR
Sbjct  1    LRDLLFALQGISGSYIRFDESD---SRIVDDIRIPGILPPSLRSLLSRLLELGLLYRRLR  57

Query  229  DFARRTRIKPEGFSARSAFASAVA-------MIIYTLEKQIINYFKEVSSLIQIMTLFQR  281
             F   +     G   + A  +A+         +I  LE Q++     + +L++++   Q 
Sbjct  58   KFVESSSSFEYGLVLQ-ALCAALQEELTEYYRLIAQLESQLLEASDSILTLLRLVVWLQP  116

Query  282  CGDLVGALSNIVEAVQKA-ASDAQVISAVIEKAAHYSEAFGSMENLFRELVARVIAPWLQ  340
               L+  LSN+VEAV+K       ++S  + +A  + + F  +  L   L+ RV  P+L+
Sbjct  117  PLLLLRVLSNLVEAVEKQNLKGGALLSL-LHEATSHGDPF--VRELLSRLLQRVSRPYLE  173

Query  341  YVEAWVGLRTETPALVDLAAKSEGFVAVERYEGRAGSRSMKASSLQYRYHPEQMPTFIPA  400
             +E W+        L D    +E FV       +    S      +Y   PE +P+F+  
Sbjct  174  MLERWIY----EGELDDPY--NEFFVEENPSVAKESLTSDDLWEDKYTLRPEMLPSFLSP  227

Query  401  EQADLIFETGRSLRLLRRY  419
            + A+ I  TG+SL  LR  
Sbjct  228  DLAEKILLTGKSLNFLREC  246



Lambda      K        H        a         alpha
   0.320    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1204910476


Query= TCONS_00002173

Length=963
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461187 pfam04130, Spc97_Spc98, Spc97 / Spc98 family. The spin...  238     4e-72
CDD:465456 pfam17681, GCP_N_terminal, Gamma tubulin complex compo...  163     2e-45


>CDD:461187 pfam04130, Spc97_Spc98, Spc97 / Spc98 family.  The spindle pole 
body (SPB) functions as the microtubule-organising centre 
in yeast. Members of this family are spindle pole body (SBP) 
components such as Spc97 and Spc98 that form a complex with 
gamma-tubulin. This family of proteins includes the grip motif 
1 and grip moti 2. Members of this family all form components 
of the gamma-tubulin complex, GCP.
Length=297

 Score = 238 bits (610),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 108/370 (29%), Positives = 146/370 (39%), Gaps = 84/370 (23%)

Query  605  LRYHLTLQWRFQLLGDGFFASRLSHSLFDPEMESGERRSGVVRSGVHTGLRLGNRDTWPP  664
            L  HL    R+ LLG G F SRL  +LFD                            W P
Sbjct  1    LLDHLRALKRYLLLGQGDFISRLMDALFDEL--------------------------WKP  34

Query  665  ASSELRLVLIGLLSDCNMDERLDNSSNAEFLRERELPGGLSFSIRDLTDEEIVKCKDPHA  724
            ASS LR  L GLL +         SSNA+    R+LP        D+      +  DP +
Sbjct  35   ASSLLRHNLTGLLEEAI------RSSNAQ----RDLP--------DVLRRLDARL-DPDS  75

Query  725  IEALDFLRLEYTPSPVLETIITQRSLDQYDRLFKHLLRLIRMVSVVKGLIRDSTARSSLS  784
            +   DFL LEY     L  ++T  +L +Y RLF+ LLRL R+  V+  L R      S S
Sbjct  76   LGGWDFLTLEYKVPWPLSLVLTPEALTKYQRLFRFLLRLKRVEFVLSSLWRRRQMSGSRS  135

Query  785  GDTRSLFQRFRIDCQHFVLAVSDYCFHVGVGSSWQSFQATLSRIEYCLEQGDIDGVIEAA  844
                      R +  HFV  +  Y     +  SW+ F+  L          D+D +IEA 
Sbjct  136  VLWHRARL-LRQEMIHFVSQLQYYVMFEVIEPSWREFEEKLQ-----KAASDLDDLIEA-  188

Query  845  HSVAWLRRYHEDTLDQMLFALFLSKRHAEAAKLLEKIFGTILTFAP-----------LSR  893
                     HED LD++L   FL+       KLLE+I   IL FA             +R
Sbjct  189  ---------HEDFLDRILKKCFLTSPQQPLLKLLEEILSLILDFAEALDGLYLSVSESAR  239

Query  894  LDGLEGVRHGSEDTIVQLYTTFRKQTSAFVGYLRGLDGVKASSKFASRSRAEPISIFERL  953
             +  + +     + + +L   FRK+ S  +  LRGL      S               +L
Sbjct  240  AEAEDELPELERERLRRLEKQFRKKVSLLLKVLRGLKSHPDESHLR------------QL  287

Query  954  LVRLDMKRYY  963
            L+RLD   YY
Sbjct  288  LLRLDFNGYY  297


>CDD:465456 pfam17681, GCP_N_terminal, Gamma tubulin complex component N-terminal. 
 This is the N-terminal domain found in components 
of the gamma-tubulin complex proteins (GCPs). Family members 
include spindle pole body (SBP) components such as Spc97 and 
Spc98 which function as the microtubule-organizing center 
in yeast. Furthermore, family members such as human GCP4 (Gamma-tubulin 
complex component 4) have been structurally elucidated. 
Functional studies have shown that the N-terminal domain 
defines the functional identity of GCPs, suggesting that 
all GCPs are incorporated into the helix of gamma-tubulin 
small complexes (gTURCs) via lateral interactions between their 
N-terminal domains. Thereby, they define the direct neighbors 
and position the GCPs within the helical wall of gTuRC. 
Sequence alignment of human GCPs based on the GCP4 structure 
helped delineate conserved regions in the N- and C-terminal 
domains. In addition to the conserved sequences, the N-terminal 
domains carry specific insertions of various sizes depending 
on the GCP, i.e. internal insertions or N-terminal 
extensions. These insertions may equally contribute to the function 
of individual GCPs as they have been implied in specific 
interactions with regulatory or structural proteins. For 
instance, GCP6 carries a large internal insertion phosphorylated 
by Plk4 and containing a domain of interaction with keratins, 
whereas the N-terminal extension of GCP3 interacts 
with the recruitment protein MOZART1.
Length=298

 Score = 163 bits (415),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 62/259 (24%), Positives = 109/259 (42%), Gaps = 21/259 (8%)

Query  185  FHALFRLGLGWNSVLFRYNKQRKAFERVSDNIRVSGVSLAVVNGLTEEVLRCGTAMYNLR  244
               L     G +    R+++      R+ D+IR+ G+    +  L   +L  G     LR
Sbjct  1    LRDLLFALQGISGSYIRFDESD---SRIVDDIRIPGILPPSLRSLLSRLLELGLLYRRLR  57

Query  245  DFARRTRIKPEGFSARSAFASAVA-------MIIYTLEKQIINYFKEVSSLIQIMTLFQR  297
             F   +     G   + A  +A+         +I  LE Q++     + +L++++   Q 
Sbjct  58   KFVESSSSFEYGLVLQ-ALCAALQEELTEYYRLIAQLESQLLEASDSILTLLRLVVWLQP  116

Query  298  CGDLVGALSNIVEAVQKA-ASDAQVISAVIEKAAHYSEAFGSMENLFRELVARVIAPWLQ  356
               L+  LSN+VEAV+K       ++S  + +A  + + F  +  L   L+ RV  P+L+
Sbjct  117  PLLLLRVLSNLVEAVEKQNLKGGALLSL-LHEATSHGDPF--VRELLSRLLQRVSRPYLE  173

Query  357  YVEAWVGLRTETPALVDLAAKSEGFVAVERYEGRAGSRSMKASSLQYRYHPEQMPTFIPA  416
             +E W+        L D    +E FV       +    S      +Y   PE +P+F+  
Sbjct  174  MLERWIY----EGELDDPY--NEFFVEENPSVAKESLTSDDLWEDKYTLRPEMLPSFLSP  227

Query  417  EQADLIFETGRSLRLLRRY  435
            + A+ I  TG+SL  LR  
Sbjct  228  DLAEKILLTGKSLNFLREC  246



Lambda      K        H        a         alpha
   0.320    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1227564492


Query= TCONS_00002174

Length=1102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  168     5e-47
CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe...  92.7    2e-22
CDD:425632 pfam00355, Rieske, Rieske [2Fe-2S] domain. The rieske ...  78.2    5e-18
CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide o...  64.9    2e-13
CDD:433491 pfam13806, Rieske_2, Rieske-like [2Fe-2S] domain           65.7    2e-13
CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase fer...  59.8    6e-12
CDD:461261 pfam04324, Fer2_BFD, BFD-like [2Fe-2S] binding domain....  56.8    6e-11


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 168 bits (428),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 86/300 (29%), Positives = 131/300 (44%), Gaps = 28/300 (9%)

Query  45   KIVIVGLGMVAISFIEKIVKQDAERRKYDIVVIGEEPHIAYNRVGLSSFFEH-RKIEDLY  103
             +V++G G   ++    +      +    + +I +E    Y    LS       +  ++ 
Sbjct  2    DVVVIGGGPAGLAAALTLA-----QLGGKVTLIEDEGTCPYGGCVLSKALLGAAEAPEIA  56

Query  104  LNPKEWYGSFKD------RSFDYHLNTKVTDIFPERKTV-----RTSTGDVIPYDILVLA  152
                + Y   ++         +  L T+V  I P  K V         G+ I YD LV+A
Sbjct  57   SLWADLYKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEELVDGDGETITYDRLVIA  116

Query  153  TGSDAVLPTHTPGYNAKGIFVYRTIQDLERLIEFASKHKGETAVTVGGGLLGLEAAKAMT  212
            TG+   LP   PG      F+ RT+   E L     K   +  V VGGG +G+E A A  
Sbjct  117  TGARPRLPP-IPGVELNVGFLVRTLDSAEALR---LKLLPKRVVVVGGGYIGVELAAA--  170

Query  213  DLEDFG-RVKLIDRNKWVLARQLDGDAGTLVTRKIRELGLDVLHEKRVAKIKTDDDNNVT  271
             L   G  V LI+    +L R  D +    + + + + G++V     V +I  D D    
Sbjct  171  -LAKLGKEVTLIEALDRLL-RAFDEEISAALEKALEKNGVEVRLGTSVKEIIGDGDGVEV  228

Query  272  GITFEDGEEIDCCCICFAIGVRPRDELGPPAGIQCAGRGGFVINESLQTSIPDIYAIGEC  331
                +DG EID   +  AIG RP  EL   AG++   RGG V++E L+TS+P IYA G+C
Sbjct  229  --ILKDGTEIDADLVVVAIGRRPNTELLEAAGLELDERGGIVVDEYLRTSVPGIYAAGDC  286


>CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe-4S domain. 
 Sulphite and nitrite reductases are vital in the biosynthetic 
assimilation of sulphur and nitrogen, respectfully. 
They are also both important for the dissimilation of oxidized 
anions for energy transduction.
Length=153

 Score = 92.7 bits (231),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 45/152 (30%), Positives = 64/152 (42%), Gaps = 17/152 (11%)

Query  711  AKSLRTIKSCVGTTWCRFGIGDSVGMAIRLEERYKSIRS----PHKLKGAVSGCVRECAE  766
              ++R +  C G   C   + D+  +A  +E+ ++        P K K AVSGC   C  
Sbjct  1    GDNVRNVTLCPGAGLCPEELLDTRPLAKAIEDEFEPDYGFPYLPRKFKIAVSGCPNNCVA  60

Query  767  AQNKDFGLIATEK-----GYNIFVGGNGGAKPRHSELLAKD--VPPEKVIPIIDRYLIFY  819
            A   D G +   K     G+NI VGG  G  P  +  L     VP E V+ +I+  L  Y
Sbjct  61   AHANDIGFVGVWKDGGEIGFNILVGGGLGRTPGAAATLKVVPFVPEEDVLEVIEAILEVY  120

Query  820  I----RTADKLQRTARWIENLPGGINYLREVI  847
                 R   K +R    IE L  G+   RE +
Sbjct  121  RDHGDRENRKKERLKYLIERL--GLEKFREEV  150


>CDD:425632 pfam00355, Rieske, Rieske [2Fe-2S] domain.  The rieske domain 
has a [2Fe-2S] centre. Two conserved cysteines coordinate one 
Fe ion, while the other Fe ion is coordinated by two conserved 
histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C 
motif at the C-terminus. The cysteines in this motif 
form a disulphide bridge, which stabilizes the protein.
Length=89

 Score = 78.2 bits (193),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 47/102 (46%), Gaps = 15/102 (15%)

Query  931   SWQPVIEANYFSDEHPQISSANIKRGDTQLAIFKVK-GKYYATQQMCPHKRAFVLSDGLI  989
             SW PV  ++   +  P++    ++ G   L +F+ + G+ YA +  CPH+ A  LS+G +
Sbjct  1     SWYPVCHSSELPEGEPKV----VEVGGEPLVVFRDEDGELYALEDRCPHRGAP-LSEGKV  55

Query  990   GDDDAGKYWVSCPYHKRNFELNGEQAGRCTNDESM-NIATFP  1030
                      + CPYH   F+      G+     +   + ++P
Sbjct  56    NGGG----RLECPYHGWRFDGT----GKVVKVPAPRPLKSYP  89


>CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=80

 Score = 64.9 bits (159),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (48%), Gaps = 5/84 (6%)

Query  195  AVTVGGGLLGLEAAKAMTDLEDFGRVKLIDRNKWVLARQLDGDAGTLVTRKIRELGLDVL  254
             V VGGG +GLE A A+  L    +V +++R   +L    D +   ++  K+ + G++ L
Sbjct  2    VVVVGGGYIGLELAGALARLGS--KVTVVERRDRLL-PGFDPEIAKILQEKLEKNGIEFL  58

Query  255  HEKRVAKIKTDDDNNVTGITFEDG  278
                V  I+ + D     +   DG
Sbjct  59   LNTTVEAIEGNGD--GVVVVLTDG  80


>CDD:433491 pfam13806, Rieske_2, Rieske-like [2Fe-2S] domain.  
Length=103

 Score = 65.7 bits (161),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 10/112 (9%)

Query  932   WQPVIEANYFSDEHPQISSANIKRGDTQLAIFKV-KGKYYATQQMCPHKRAFVLSDGLIG  990
             W PV       D+ P  +      G  Q+A+F++  G+ YA     P   A VLS G++G
Sbjct  1     WTPVCAL----DDLPPGTGVCALVGGRQVAVFRLEDGQVYAIDNRDPFSGANVLSRGIVG  56

Query  991   DDDAGKYWVSCPYHKRNFELNGEQAGRCTNDESMNIATFPVEERDDGWVYMK  1042
             D   G+  V+ P +K++F+L   + G C  D  +++  +PV    DG V ++
Sbjct  57    DLG-GELVVASPLYKQHFDL---KTGECLEDPEVSVPVYPV-RVRDGNVEVQ  103


>CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase ferredoxin-like 
half domain.  Sulfite and Nitrite reductases are key to 
both biosynthetic assimilation of sulfur and nitrogen and 
dissimilation of oxidized anions for energy transduction. Two 
copies of this repeat are found in Nitrite and Sulfite reductases 
and form a single structural domain.
Length=67

 Score = 59.8 bits (146),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 40/62 (65%), Gaps = 1/62 (2%)

Query  639  QRNGTFSVVPRVPGGEITADKLITIGQVAKKY-NLYCKITGGQRIDLFGAKKQDLLDIWT  697
            Q++G + V  RVPGG +TA++L  +  +A+KY +   ++T  Q ++L G  ++DL ++  
Sbjct  3    QKDGDYMVRVRVPGGRLTAEQLRALADIAEKYGDGEIRLTTRQNLELHGVPEEDLPELLE  62

Query  698  EL  699
            EL
Sbjct  63   EL  64


>CDD:461261 pfam04324, Fer2_BFD, BFD-like [2Fe-2S] binding domain.  The two 
Fe ions are each coordinated by two conserved cysteine residues. 
This domain occurs alone in small proteins such as Bacterioferritin-associated 
ferredoxin (BFD). The function of 
BFD is not known, but it may may be a general redox and/or 
regulatory component involved in the iron storage or mobilisation 
functions of bacterioferritin in bacteria. This domain 
is also found in nitrate reductase proteins in association 
with Nitrite and sulphite reductase 4Fe-4S domain (pfam01077), 
Nitrite/Sulfite reductase ferredoxin-like half domain (pfam03460) 
and Pyridine nucleotide-disulphide oxidoreductase (pfam00070). 
It is also found in NifU nitrogen fixation proteins, 
in association with NifU-like N terminal domain (pfam01592) 
and NifU-like domain (pfam01106).
Length=50

 Score = 56.8 bits (138),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 20/48 (42%), Positives = 30/48 (63%), Gaps = 1/48 (2%)

Query  499  ICSCHNVTKGDIVENVKSGTCKTIGEIKSCTKAGSGCGGCMPLVQSIF  546
            +C C  VT G+I + ++ G   T+ E+K  TKAG+GCG C P ++ I 
Sbjct  2    VCRCFGVTDGEIRDAIREGL-TTVEEVKRRTKAGTGCGSCRPAIEEIL  48



Lambda      K        H        a         alpha
   0.318    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1403219190


Query= TCONS_00007543

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425632 pfam00355, Rieske, Rieske [2Fe-2S] domain. The rieske ...  78.2    2e-19
CDD:433491 pfam13806, Rieske_2, Rieske-like [2Fe-2S] domain           66.8    6e-15


>CDD:425632 pfam00355, Rieske, Rieske [2Fe-2S] domain.  The rieske domain 
has a [2Fe-2S] centre. Two conserved cysteines coordinate one 
Fe ion, while the other Fe ion is coordinated by two conserved 
histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C 
motif at the C-terminus. The cysteines in this motif 
form a disulphide bridge, which stabilizes the protein.
Length=89

 Score = 78.2 bits (193),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 47/102 (46%), Gaps = 15/102 (15%)

Query  74   SWQPVIEANYFSDEHPQISSANIKRGDTQLAIFKVK-GKYYATQQMCPHKRAFVLSDGLI  132
            SW PV  ++   +  P++    ++ G   L +F+ + G+ YA +  CPH+ A  LS+G +
Sbjct  1    SWYPVCHSSELPEGEPKV----VEVGGEPLVVFRDEDGELYALEDRCPHRGAP-LSEGKV  55

Query  133  GDDDAGKYWVSCPYHKRNFELNGEQAGRCTNDESM-NIATFP  173
                     + CPYH   F+      G+     +   + ++P
Sbjct  56   NGGG----RLECPYHGWRFDGT----GKVVKVPAPRPLKSYP  89


>CDD:433491 pfam13806, Rieske_2, Rieske-like [2Fe-2S] domain.  
Length=103

 Score = 66.8 bits (164),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 10/112 (9%)

Query  75   WQPVIEANYFSDEHPQISSANIKRGDTQLAIFKV-KGKYYATQQMCPHKRAFVLSDGLIG  133
            W PV       D+ P  +      G  Q+A+F++  G+ YA     P   A VLS G++G
Sbjct  1    WTPVCAL----DDLPPGTGVCALVGGRQVAVFRLEDGQVYAIDNRDPFSGANVLSRGIVG  56

Query  134  DDDAGKYWVSCPYHKRNFELNGEQAGRCTNDESMNIATFPVEERDDGWVYMK  185
            D   G+  V+ P +K++F+L   + G C  D  +++  +PV    DG V ++
Sbjct  57   DLG-GELVVASPLYKQHFDL---KTGECLEDPEVSVPVYPV-RVRDGNVEVQ  103



Lambda      K        H        a         alpha
   0.315    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0939    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00002175

Length=755
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe...  93.9    5e-23
CDD:425632 pfam00355, Rieske, Rieske [2Fe-2S] domain. The rieske ...  78.2    3e-18
CDD:433491 pfam13806, Rieske_2, Rieske-like [2Fe-2S] domain           66.0    8e-14
CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase fer...  59.8    4e-12
CDD:461261 pfam04324, Fer2_BFD, BFD-like [2Fe-2S] binding domain....  57.2    3e-11


>CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe-4S domain. 
 Sulphite and nitrite reductases are vital in the biosynthetic 
assimilation of sulphur and nitrogen, respectfully. 
They are also both important for the dissimilation of oxidized 
anions for energy transduction.
Length=153

 Score = 93.9 bits (234),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 45/152 (30%), Positives = 64/152 (42%), Gaps = 17/152 (11%)

Query  364  AKSLRTIKSCVGTTWCRFGIGDSVGMAIRLEERYKSIRS----PHKLKGAVSGCVRECAE  419
              ++R +  C G   C   + D+  +A  +E+ ++        P K K AVSGC   C  
Sbjct  1    GDNVRNVTLCPGAGLCPEELLDTRPLAKAIEDEFEPDYGFPYLPRKFKIAVSGCPNNCVA  60

Query  420  AQNKDFGLIATEK-----GYNIFVGGNGGAKPRHSELLAKD--VPPEKVIPIIDRYLIFY  472
            A   D G +   K     G+NI VGG  G  P  +  L     VP E V+ +I+  L  Y
Sbjct  61   AHANDIGFVGVWKDGGEIGFNILVGGGLGRTPGAAATLKVVPFVPEEDVLEVIEAILEVY  120

Query  473  I----RTADKLQRTARWIENLPGGINYLREVI  500
                 R   K +R    IE L  G+   RE +
Sbjct  121  RDHGDRENRKKERLKYLIERL--GLEKFREEV  150


>CDD:425632 pfam00355, Rieske, Rieske [2Fe-2S] domain.  The rieske domain 
has a [2Fe-2S] centre. Two conserved cysteines coordinate one 
Fe ion, while the other Fe ion is coordinated by two conserved 
histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C 
motif at the C-terminus. The cysteines in this motif 
form a disulphide bridge, which stabilizes the protein.
Length=89

 Score = 78.2 bits (193),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 47/102 (46%), Gaps = 15/102 (15%)

Query  584  SWQPVIEANYFSDEHPQISSANIKRGDTQLAIFKVK-GKYYATQQMCPHKRAFVLSDGLI  642
            SW PV  ++   +  P++    ++ G   L +F+ + G+ YA +  CPH+ A  LS+G +
Sbjct  1    SWYPVCHSSELPEGEPKV----VEVGGEPLVVFRDEDGELYALEDRCPHRGAP-LSEGKV  55

Query  643  GDDDAGKYWVSCPYHKRNFELNGEQAGRCTNDESM-NIATFP  683
                     + CPYH   F+      G+     +   + ++P
Sbjct  56   NGGG----RLECPYHGWRFDGT----GKVVKVPAPRPLKSYP  89


>CDD:433491 pfam13806, Rieske_2, Rieske-like [2Fe-2S] domain.  
Length=103

 Score = 66.0 bits (162),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 10/112 (9%)

Query  585  WQPVIEANYFSDEHPQISSANIKRGDTQLAIFKV-KGKYYATQQMCPHKRAFVLSDGLIG  643
            W PV       D+ P  +      G  Q+A+F++  G+ YA     P   A VLS G++G
Sbjct  1    WTPVCAL----DDLPPGTGVCALVGGRQVAVFRLEDGQVYAIDNRDPFSGANVLSRGIVG  56

Query  644  DDDAGKYWVSCPYHKRNFELNGEQAGRCTNDESMNIATFPVEERDDGWVYMK  695
            D   G+  V+ P +K++F+L   + G C  D  +++  +PV    DG V ++
Sbjct  57   DLG-GELVVASPLYKQHFDL---KTGECLEDPEVSVPVYPV-RVRDGNVEVQ  103


>CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase ferredoxin-like 
half domain.  Sulfite and Nitrite reductases are key to 
both biosynthetic assimilation of sulfur and nitrogen and 
dissimilation of oxidized anions for energy transduction. Two 
copies of this repeat are found in Nitrite and Sulfite reductases 
and form a single structural domain.
Length=67

 Score = 59.8 bits (146),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 40/62 (65%), Gaps = 1/62 (2%)

Query  292  QRNGTFSVVPRVPGGEITADKLITIGQVAKKY-NLYCKITGGQRIDLFGAKKQDLLDIWT  350
            Q++G + V  RVPGG +TA++L  +  +A+KY +   ++T  Q ++L G  ++DL ++  
Sbjct  3    QKDGDYMVRVRVPGGRLTAEQLRALADIAEKYGDGEIRLTTRQNLELHGVPEEDLPELLE  62

Query  351  EL  352
            EL
Sbjct  63   EL  64


>CDD:461261 pfam04324, Fer2_BFD, BFD-like [2Fe-2S] binding domain.  The two 
Fe ions are each coordinated by two conserved cysteine residues. 
This domain occurs alone in small proteins such as Bacterioferritin-associated 
ferredoxin (BFD). The function of 
BFD is not known, but it may may be a general redox and/or 
regulatory component involved in the iron storage or mobilisation 
functions of bacterioferritin in bacteria. This domain 
is also found in nitrate reductase proteins in association 
with Nitrite and sulphite reductase 4Fe-4S domain (pfam01077), 
Nitrite/Sulfite reductase ferredoxin-like half domain (pfam03460) 
and Pyridine nucleotide-disulphide oxidoreductase (pfam00070). 
It is also found in NifU nitrogen fixation proteins, 
in association with NifU-like N terminal domain (pfam01592) 
and NifU-like domain (pfam01106).
Length=50

 Score = 57.2 bits (139),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 20/48 (42%), Positives = 30/48 (63%), Gaps = 1/48 (2%)

Query  152  ICSCHNVTKGDIVENVKSGTCKTIGEIKSCTKAGSGCGGCMPLVQSIF  199
            +C C  VT G+I + ++ G   T+ E+K  TKAG+GCG C P ++ I 
Sbjct  2    VCRCFGVTDGEIRDAIREGL-TTVEEVKRRTKAGTGCGSCRPAIEEIL  48



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 961855472


Query= TCONS_00002177

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.9    7e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.9 bits (174),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 73/188 (39%), Gaps = 11/188 (6%)

Query  41   WLGFMVAFLSWYAFPPLLTVTIRKDLHMTQQQVANSNIVALLATFLVRFIAGPLCDRFGP  100
            +L   +A L      P L + + +DL ++  ++     +  L   L + +AG L DRFG 
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  101  RLVFIGLLLCGSIPTAMAGLVTTPNGLIALRFFVGILGGTFVP-CQVWCTGFFDKNIVGT  159
            R V +  LL  ++   +    ++   L+ LR   G+  G   P        +F     G 
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  160  ANSLAAGWGNAGGGITYFVMPAIYDSLVHSQGLAPHKAWRVAYIVPFIIIVVLALCMLLI  219
            A  L +     G  +   +   +               WR A+++  I+ ++ A+ +LL 
Sbjct  122  ALGLVSAGFGLGAALGPLLGGLLASLF----------GWRAAFLILAILSLLAAVLLLLP  171

Query  220  CEDTPTGK  227
                 + +
Sbjct  172  RPPPESKR  179



Lambda      K        H        a         alpha
   0.325    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00002176

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.9    7e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.9 bits (174),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 73/188 (39%), Gaps = 11/188 (6%)

Query  41   WLGFMVAFLSWYAFPPLLTVTIRKDLHMTQQQVANSNIVALLATFLVRFIAGPLCDRFGP  100
            +L   +A L      P L + + +DL ++  ++     +  L   L + +AG L DRFG 
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  101  RLVFIGLLLCGSIPTAMAGLVTTPNGLIALRFFVGILGGTFVP-CQVWCTGFFDKNIVGT  159
            R V +  LL  ++   +    ++   L+ LR   G+  G   P        +F     G 
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  160  ANSLAAGWGNAGGGITYFVMPAIYDSLVHSQGLAPHKAWRVAYIVPFIIIVVLALCMLLI  219
            A  L +     G  +   +   +               WR A+++  I+ ++ A+ +LL 
Sbjct  122  ALGLVSAGFGLGAALGPLLGGLLASLF----------GWRAAFLILAILSLLAAVLLLLP  171

Query  220  CEDTPTGK  227
                 + +
Sbjct  172  RPPPESKR  179



Lambda      K        H        a         alpha
   0.325    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00007544

Length=342


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00007546

Length=342


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00007547

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.9    7e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.9 bits (174),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 73/188 (39%), Gaps = 11/188 (6%)

Query  41   WLGFMVAFLSWYAFPPLLTVTIRKDLHMTQQQVANSNIVALLATFLVRFIAGPLCDRFGP  100
            +L   +A L      P L + + +DL ++  ++     +  L   L + +AG L DRFG 
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  101  RLVFIGLLLCGSIPTAMAGLVTTPNGLIALRFFVGILGGTFVP-CQVWCTGFFDKNIVGT  159
            R V +  LL  ++   +    ++   L+ LR   G+  G   P        +F     G 
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  160  ANSLAAGWGNAGGGITYFVMPAIYDSLVHSQGLAPHKAWRVAYIVPFIIIVVLALCMLLI  219
            A  L +     G  +   +   +               WR A+++  I+ ++ A+ +LL 
Sbjct  122  ALGLVSAGFGLGAALGPLLGGLLASLF----------GWRAAFLILAILSLLAAVLLLLP  171

Query  220  CEDTPTGK  227
                 + +
Sbjct  172  RPPPESKR  179



Lambda      K        H        a         alpha
   0.325    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00002178

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.9    7e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.9 bits (174),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 73/188 (39%), Gaps = 11/188 (6%)

Query  41   WLGFMVAFLSWYAFPPLLTVTIRKDLHMTQQQVANSNIVALLATFLVRFIAGPLCDRFGP  100
            +L   +A L      P L + + +DL ++  ++     +  L   L + +AG L DRFG 
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  101  RLVFIGLLLCGSIPTAMAGLVTTPNGLIALRFFVGILGGTFVP-CQVWCTGFFDKNIVGT  159
            R V +  LL  ++   +    ++   L+ LR   G+  G   P        +F     G 
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  160  ANSLAAGWGNAGGGITYFVMPAIYDSLVHSQGLAPHKAWRVAYIVPFIIIVVLALCMLLI  219
            A  L +     G  +   +   +               WR A+++  I+ ++ A+ +LL 
Sbjct  122  ALGLVSAGFGLGAALGPLLGGLLASLF----------GWRAAFLILAILSLLAAVLLLLP  171

Query  220  CEDTPTGK  227
                 + +
Sbjct  172  RPPPESKR  179



Lambda      K        H        a         alpha
   0.325    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00007548

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            72.8    2e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 72.8 bits (179),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 73/188 (39%), Gaps = 11/188 (6%)

Query  41   WLGFMVAFLSWYAFPPLLTVTIRKDLHMTQQQVANSNIVALLATFLVRFIAGPLCDRFGP  100
            +L   +A L      P L + + +DL ++  ++     +  L   L + +AG L DRFG 
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  101  RLVFIGLLLCGSIPTAMAGLVTTPNGLIALRFFVGILGGTFVP-CQVWCTGFFDKNIVGT  159
            R V +  LL  ++   +    ++   L+ LR   G+  G   P        +F     G 
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  160  ANSLAAGWGNAGGGITYFVMPAIYDSLVHSQGLAPHKAWRVAYIVPFIIIVVLALCMLLI  219
            A  L +     G  +   +   +               WR A+++  I+ ++ A+ +LL 
Sbjct  122  ALGLVSAGFGLGAALGPLLGGLLASLF----------GWRAAFLILAILSLLAAVLLLLP  171

Query  220  CEDTPTGK  227
                 + +
Sbjct  172  RPPPESKR  179



Lambda      K        H        a         alpha
   0.324    0.138    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00002179

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.9    7e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.9 bits (174),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 73/188 (39%), Gaps = 11/188 (6%)

Query  41   WLGFMVAFLSWYAFPPLLTVTIRKDLHMTQQQVANSNIVALLATFLVRFIAGPLCDRFGP  100
            +L   +A L      P L + + +DL ++  ++     +  L   L + +AG L DRFG 
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  101  RLVFIGLLLCGSIPTAMAGLVTTPNGLIALRFFVGILGGTFVP-CQVWCTGFFDKNIVGT  159
            R V +  LL  ++   +    ++   L+ LR   G+  G   P        +F     G 
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  160  ANSLAAGWGNAGGGITYFVMPAIYDSLVHSQGLAPHKAWRVAYIVPFIIIVVLALCMLLI  219
            A  L +     G  +   +   +               WR A+++  I+ ++ A+ +LL 
Sbjct  122  ALGLVSAGFGLGAALGPLLGGLLASLF----------GWRAAFLILAILSLLAAVLLLLP  171

Query  220  CEDTPTGK  227
                 + +
Sbjct  172  RPPPESKR  179



Lambda      K        H        a         alpha
   0.325    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00002180

Length=452


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00002182

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428428 pfam05336, rhaM, L-rhamnose mutarotase. This family co...  122     6e-38


>CDD:428428 pfam05336, rhaM, L-rhamnose mutarotase.  This family contains 
L-rhamnose mutarotase which is a glycosyl hydrolase that converts 
the monosaccharide L-rhamnopyranose from the alpha to 
the beta stereoisomer. In Escherichia coli this enzyme is the 
product of the rhaM gene (also known as yiiL). The tertiary 
structure has been solved, in complex with L-rhamnose, and 
the catalytic mechanism determined. His22 is the proton donor. 
The enzyme naturally exists as a dimer.
Length=100

 Score = 122 bits (308),  Expect = 6e-38, Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 45/84 (54%), Gaps = 2/84 (2%)

Query  6   RIAQIVHLKPSAVEAYKECHANVWPEVLQQIKECNIRDYSIFFDNERTLFATFKYVGDDY  65
           R A  + LKP  +E YK  HA VWPEVL  ++E  IR+YSIF      LF   +    D 
Sbjct  1   RYAFTLDLKPELIEEYKRRHAEVWPEVLAALREAGIRNYSIFLREGNRLFMYMET--GDD  58

Query  66  EADMEKMRANPKVREWWAMTDGMQ  89
            AD     ANP V+EWWA+    Q
Sbjct  59  AADAALAAANPVVQEWWALMADFQ  82



Lambda      K        H        a         alpha
   0.321    0.135    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00007549

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00002183

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00007551

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465361 pfam17144, Ribosomal_L5e, Ribosomal large subunit prot...  325     2e-114
CDD:464103 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal r...  67.2    2e-15 


>CDD:465361 pfam17144, Ribosomal_L5e, Ribosomal large subunit proteins 60S 
L5, and 50S L18.  This family contains the large 60S ribosomal 
L5 proteins from Eukaryota and the 50S L18 proteins from 
Archaea. It has been shown that the amino terminal 93 amino 
acids of Rat Rpl5 are necessary and sufficient to bind 5S 
rRNA in vitro, suggesting that the entire family has a function 
in rRNA binding.
Length=163

 Score = 325 bits (835),  Expect = 2e-114, Method: Composition-based stats.
 Identities = 122/166 (73%), Positives = 136/166 (82%), Gaps = 3/166 (2%)

Query  14   SRYQTKYRRRREGKTDYYARKRLITQAKNKYNAPKYRLVVRFTNRDIITQIVYSEITGDK  73
             R+Q K+RRRREGKTDYYARKRLITQ KNKYN PKYRLVVRFTN+DII QIVY++I GD+
Sbjct  1    KRFQVKFRRRREGKTDYYARKRLITQDKNKYNTPKYRLVVRFTNKDIICQIVYAKIEGDR  60

Query  74   VFASAYSHELKRYGITQGLTNWAAAYATGLLLARRTLKKLGLDEQFTGVEEPDGEYKLTE  133
            V A+AYSHEL +YGI  GLTN+AAAYATGLLLARR L KLGLD+ + G EE DGE    E
Sbjct  61   VLAAAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLTKLGLDKIYEGQEEVDGEEYNVE  120

Query  134  AVETDDGTRRPFKAFLDVGLVRTSTGARVFGAMKGASDGGIFIPHS  179
             +   D   RPFKAFLDVGL RT+TGARVFGAMKGA DGG+ IPHS
Sbjct  121  EI---DDEPRPFKAFLDVGLARTTTGARVFGAMKGAVDGGLDIPHS  163


>CDD:464103 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region. 
 This domain is the C-terminal end of ribosomal L18/L5 proteins.
Length=55

 Score = 67.2 bits (165),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 40/62 (65%), Gaps = 7/62 (11%)

Query  239  LEEIYAEAHKAIREDPFKKDEDEKPKKSKEEWKAESKKYKKAKLSREEKKARVEQKIREL  298
            +EE+Y +AH AIREDP         KK +++  AESKKYKK KL+  ++KARV QK   L
Sbjct  1    IEEMYKKAHAAIREDPS-------KKKKEKKKPAESKKYKKKKLTLAQRKARVAQKKAAL  53

Query  299  AA  300
             A
Sbjct  54   LA  55



Lambda      K        H        a         alpha
   0.314    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00002184

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465361 pfam17144, Ribosomal_L5e, Ribosomal large subunit prot...  325     2e-114
CDD:464103 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal r...  67.2    2e-15 


>CDD:465361 pfam17144, Ribosomal_L5e, Ribosomal large subunit proteins 60S 
L5, and 50S L18.  This family contains the large 60S ribosomal 
L5 proteins from Eukaryota and the 50S L18 proteins from 
Archaea. It has been shown that the amino terminal 93 amino 
acids of Rat Rpl5 are necessary and sufficient to bind 5S 
rRNA in vitro, suggesting that the entire family has a function 
in rRNA binding.
Length=163

 Score = 325 bits (835),  Expect = 2e-114, Method: Composition-based stats.
 Identities = 122/166 (73%), Positives = 136/166 (82%), Gaps = 3/166 (2%)

Query  14   SRYQTKYRRRREGKTDYYARKRLITQAKNKYNAPKYRLVVRFTNRDIITQIVYSEITGDK  73
             R+Q K+RRRREGKTDYYARKRLITQ KNKYN PKYRLVVRFTN+DII QIVY++I GD+
Sbjct  1    KRFQVKFRRRREGKTDYYARKRLITQDKNKYNTPKYRLVVRFTNKDIICQIVYAKIEGDR  60

Query  74   VFASAYSHELKRYGITQGLTNWAAAYATGLLLARRTLKKLGLDEQFTGVEEPDGEYKLTE  133
            V A+AYSHEL +YGI  GLTN+AAAYATGLLLARR L KLGLD+ + G EE DGE    E
Sbjct  61   VLAAAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLTKLGLDKIYEGQEEVDGEEYNVE  120

Query  134  AVETDDGTRRPFKAFLDVGLVRTSTGARVFGAMKGASDGGIFIPHS  179
             +   D   RPFKAFLDVGL RT+TGARVFGAMKGA DGG+ IPHS
Sbjct  121  EI---DDEPRPFKAFLDVGLARTTTGARVFGAMKGAVDGGLDIPHS  163


>CDD:464103 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region. 
 This domain is the C-terminal end of ribosomal L18/L5 proteins.
Length=55

 Score = 67.2 bits (165),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 40/62 (65%), Gaps = 7/62 (11%)

Query  239  LEEIYAEAHKAIREDPFKKDEDEKPKKSKEEWKAESKKYKKAKLSREEKKARVEQKIREL  298
            +EE+Y +AH AIREDP         KK +++  AESKKYKK KL+  ++KARV QK   L
Sbjct  1    IEEMYKKAHAAIREDPS-------KKKKEKKKPAESKKYKKKKLTLAQRKARVAQKKAAL  53

Query  299  AA  300
             A
Sbjct  54   LA  55



Lambda      K        H        a         alpha
   0.314    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00002185

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464103 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal r...  61.8    1e-14


>CDD:464103 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region. 
 This domain is the C-terminal end of ribosomal L18/L5 proteins.
Length=55

 Score = 61.8 bits (151),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 40/62 (65%), Gaps = 7/62 (11%)

Query  74   LEEIYAEAHKAIREDPFKKDEDEKPKKSKEEWKAESKKYKKAKLSREEKKARVEQKIREL  133
            +EE+Y +AH AIREDP         KK +++  AESKKYKK KL+  ++KARV QK   L
Sbjct  1    IEEMYKKAHAAIREDPS-------KKKKEKKKPAESKKYKKKKLTLAQRKARVAQKKAAL  53

Query  134  AA  135
             A
Sbjct  54   LA  55



Lambda      K        H        a         alpha
   0.308    0.129    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00002187

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464103 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal r...  61.8    1e-14


>CDD:464103 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region. 
 This domain is the C-terminal end of ribosomal L18/L5 proteins.
Length=55

 Score = 61.8 bits (151),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 40/62 (65%), Gaps = 7/62 (11%)

Query  74   LEEIYAEAHKAIREDPFKKDEDEKPKKSKEEWKAESKKYKKAKLSREEKKARVEQKIREL  133
            +EE+Y +AH AIREDP         KK +++  AESKKYKK KL+  ++KARV QK   L
Sbjct  1    IEEMYKKAHAAIREDPS-------KKKKEKKKPAESKKYKKKKLTLAQRKARVAQKKAAL  53

Query  134  AA  135
             A
Sbjct  54   LA  55



Lambda      K        H        a         alpha
   0.308    0.129    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00002186

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464103 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal r...  61.8    1e-14


>CDD:464103 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region. 
 This domain is the C-terminal end of ribosomal L18/L5 proteins.
Length=55

 Score = 61.8 bits (151),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 40/62 (65%), Gaps = 7/62 (11%)

Query  74   LEEIYAEAHKAIREDPFKKDEDEKPKKSKEEWKAESKKYKKAKLSREEKKARVEQKIREL  133
            +EE+Y +AH AIREDP         KK +++  AESKKYKK KL+  ++KARV QK   L
Sbjct  1    IEEMYKKAHAAIREDPS-------KKKKEKKKPAESKKYKKKKLTLAQRKARVAQKKAAL  53

Query  134  AA  135
             A
Sbjct  54   LA  55



Lambda      K        H        a         alpha
   0.308    0.129    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00002188

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465361 pfam17144, Ribosomal_L5e, Ribosomal large subunit prot...  322     5e-113
CDD:464103 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal r...  68.3    9e-16 


>CDD:465361 pfam17144, Ribosomal_L5e, Ribosomal large subunit proteins 60S 
L5, and 50S L18.  This family contains the large 60S ribosomal 
L5 proteins from Eukaryota and the 50S L18 proteins from 
Archaea. It has been shown that the amino terminal 93 amino 
acids of Rat Rpl5 are necessary and sufficient to bind 5S 
rRNA in vitro, suggesting that the entire family has a function 
in rRNA binding.
Length=163

 Score = 322 bits (827),  Expect = 5e-113, Method: Composition-based stats.
 Identities = 121/163 (74%), Positives = 134/163 (82%), Gaps = 3/163 (2%)

Query  25   QTKYRRRREGKTDYYARKRLITQAKNKYNAPKYRLVVRFTNRDIITQIVYSEITGDKVFA  84
            Q K+RRRREGKTDYYARKRLITQ KNKYN PKYRLVVRFTN+DII QIVY++I GD+V A
Sbjct  4    QVKFRRRREGKTDYYARKRLITQDKNKYNTPKYRLVVRFTNKDIICQIVYAKIEGDRVLA  63

Query  85   SAYSHELKRYGITQGLTNWAAAYATGLLLARRTLKKLGLDEQFTGVEEPDGEYKLTEAVE  144
            +AYSHEL +YGI  GLTN+AAAYATGLLLARR L KLGLD+ + G EE DGE    E + 
Sbjct  64   AAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLTKLGLDKIYEGQEEVDGEEYNVEEI-  122

Query  145  TDDGTRRPFKAFLDVGLVRTSTGARVFGAMKGASDGGIFIPHS  187
              D   RPFKAFLDVGL RT+TGARVFGAMKGA DGG+ IPHS
Sbjct  123  --DDEPRPFKAFLDVGLARTTTGARVFGAMKGAVDGGLDIPHS  163


>CDD:464103 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region. 
 This domain is the C-terminal end of ribosomal L18/L5 proteins.
Length=55

 Score = 68.3 bits (168),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 40/62 (65%), Gaps = 7/62 (11%)

Query  247  LEEIYAEAHKAIREDPFKKDEDEKPKKSKEEWKAESKKYKKAKLSREEKKARVEQKIREL  306
            +EE+Y +AH AIREDP         KK +++  AESKKYKK KL+  ++KARV QK   L
Sbjct  1    IEEMYKKAHAAIREDPS-------KKKKEKKKPAESKKYKKKKLTLAQRKARVAQKKAAL  53

Query  307  AA  308
             A
Sbjct  54   LA  55



Lambda      K        H        a         alpha
   0.315    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00002189

Length=706
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase. ...  1232    0.0  


>CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase.  The members 
of this family catalyze the formation of glucose 1-phosphate 
from one of the following polyglucoses; glycogen, starch, 
glucan or maltodextrin.
Length=713

 Score = 1232 bits (3192),  Expect = 0.0, Method: Composition-based stats.
 Identities = 402/706 (57%), Positives = 490/706 (69%), Gaps = 36/706 (5%)

Query  1    MATLNYPAWGYGLRYRYGIFKQEIVDGYQVEIPDYWLDF-NPWEFPRHDITVDIQFYGWV  59
            +ATL  PA+GYG+RY YG+FKQ+IVDG+QVE+PD WL F NPWE  R ++ V+++F G V
Sbjct  36   LATLGLPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRFGNPWEIRRPEVAVEVKFGGRV  95

Query  60   RTYQDENGKTIHSWQDGEAVQAVAYDVPIPGYGTRTTNNLRLWSSKAASGEFDFQKFNAG  119
              Y D  G+    W  GE V AV YD PIPGYGT T N LRLWS++A S EFD   FNAG
Sbjct  96   EEYTDG-GRLRVRWVPGETVLAVPYDTPIPGYGTNTVNTLRLWSAEA-SEEFDLDAFNAG  153

Query  120  DYESAVADQQRAETISAVLYPNDNLERGKELRLKQQYFWCAASLYDIVRRFKKTKRAWSK  179
            DY  AV ++ RAE IS VLYPND+ E GKELRLKQQYF+ +ASL DI+RRFKK      +
Sbjct  154  DYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKGGGDLDE  213

Query  180  FPEQVAIQLNDTHPTLAIVELQRILIDQEGLEWDEAWTIVTKTFGYTNHTVLPEALEKWS  239
             P++VAIQLNDTHP LAI EL RIL+D+EGL WDEAW I TKTF YTNHT+LPEALEKW 
Sbjct  214  LPDKVAIQLNDTHPALAIPELMRILVDEEGLGWDEAWDITTKTFAYTNHTLLPEALEKWP  273

Query  240  VPLMQNLLPRHLQIIYDINLFFLQSVEKRFPSDREMLSRVSIIEESHPKMVRMAHIAIIG  299
            V L + LLPRHL+IIY+IN  FL+ V  +FP D + L R+SIIEE   K VRMAH+AI+G
Sbjct  274  VDLFERLLPRHLEIIYEINRRFLEEVRAKFPGDEDRLRRMSIIEEGGDKQVRMAHLAIVG  333

Query  300  SHKVNGVAELHSDLIKTTIFKDFVKIYGPDKFTNVTNGITPRRWLHQANPRLSDLIASKL  359
            SH VNGVA LH++L+K T+FKDF ++Y P+KF N TNGITPRRWL  ANP L+ LI   +
Sbjct  334  SHSVNGVAALHTELLKETVFKDFYELY-PEKFNNKTNGITPRRWLLLANPELAALITETI  392

Query  360  GGYDFLKDLTLLDQLEAYVDDKAFRAEWSEIKTANKLRLAKHIKDTTGYSVNPNALFDVQ  419
             G  ++ DL  L +LE + DD AF   W  IK ANK RLA +IK TTG  V+P+++FDVQ
Sbjct  393  -GDGWITDLDQLKKLEPFADDPAFLERWRAIKQANKQRLAAYIKKTTGIEVDPDSIFDVQ  451

Query  420  VKRIHEYKRQQLNIFGVIHRYLIIKAMSREEKEKLVPRVSIFGGKAAPGYWMAKTIIHLI  479
            VKRIHEYKRQ LN   +I  Y  IK         +VPR  IFGGKAAPGY+MAK II LI
Sbjct  452  VKRIHEYKRQLLNALHIITLYNRIKEN---PNADIVPRTFIFGGKAAPGYYMAKLIIKLI  508

Query  480  NRVAAVVNNDADVGDLLKVIFIEDYNVSKAEIICPASDISEHISTAGTEASGTSNMKFVL  539
            N VA VVNND DV D LKV+F+ +YNVS AE I PA+D+SE ISTAG EASGT NMKF+L
Sbjct  509  NSVAEVVNNDPDVNDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFML  568

Query  540  NGGLIIGTCDGANVSLTRSTLFDMLLTGALQIEITREIGEQNIFLFGTLAEDVEELRHRH  599
            NG L IGT DGANV                  EI  E+GE+NIF+FG  AE+VE LR + 
Sbjct  569  NGALTIGTLDGANV------------------EIREEVGEENIFIFGLTAEEVEALRAKG  610

Query  600  -----FYGDFQLDPQLSKVFEAIRSDMF--GDASNFSALMSAIAEHGDYYLVSDDFNSYI  652
                 +Y   + +P+L +V + I S  F  GD   F  L+ ++   GD YLV  DF SY+
Sbjct  611  YNPRDYY---ESNPELKRVLDQIASGTFSPGDPGLFRPLVDSLLNGGDPYLVLADFESYV  667

Query  653  TTQEIVDEAFKNQDEWIAKSITSVARMGFFSTDRVISEYADSIWNI  698
              QE VD A+++++EW   SI ++AR G FS+DR I EYA+ IW +
Sbjct  668  DAQERVDAAYRDREEWTRMSILNIARSGKFSSDRTIREYAEDIWKV  713



Lambda      K        H        a         alpha
   0.320    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 904046270


Query= TCONS_00002190

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00007554

Length=706
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase. ...  1232    0.0  


>CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase.  The members 
of this family catalyze the formation of glucose 1-phosphate 
from one of the following polyglucoses; glycogen, starch, 
glucan or maltodextrin.
Length=713

 Score = 1232 bits (3192),  Expect = 0.0, Method: Composition-based stats.
 Identities = 402/706 (57%), Positives = 490/706 (69%), Gaps = 36/706 (5%)

Query  1    MATLNYPAWGYGLRYRYGIFKQEIVDGYQVEIPDYWLDF-NPWEFPRHDITVDIQFYGWV  59
            +ATL  PA+GYG+RY YG+FKQ+IVDG+QVE+PD WL F NPWE  R ++ V+++F G V
Sbjct  36   LATLGLPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRFGNPWEIRRPEVAVEVKFGGRV  95

Query  60   RTYQDENGKTIHSWQDGEAVQAVAYDVPIPGYGTRTTNNLRLWSSKAASGEFDFQKFNAG  119
              Y D  G+    W  GE V AV YD PIPGYGT T N LRLWS++A S EFD   FNAG
Sbjct  96   EEYTDG-GRLRVRWVPGETVLAVPYDTPIPGYGTNTVNTLRLWSAEA-SEEFDLDAFNAG  153

Query  120  DYESAVADQQRAETISAVLYPNDNLERGKELRLKQQYFWCAASLYDIVRRFKKTKRAWSK  179
            DY  AV ++ RAE IS VLYPND+ E GKELRLKQQYF+ +ASL DI+RRFKK      +
Sbjct  154  DYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKGGGDLDE  213

Query  180  FPEQVAIQLNDTHPTLAIVELQRILIDQEGLEWDEAWTIVTKTFGYTNHTVLPEALEKWS  239
             P++VAIQLNDTHP LAI EL RIL+D+EGL WDEAW I TKTF YTNHT+LPEALEKW 
Sbjct  214  LPDKVAIQLNDTHPALAIPELMRILVDEEGLGWDEAWDITTKTFAYTNHTLLPEALEKWP  273

Query  240  VPLMQNLLPRHLQIIYDINLFFLQSVEKRFPSDREMLSRVSIIEESHPKMVRMAHIAIIG  299
            V L + LLPRHL+IIY+IN  FL+ V  +FP D + L R+SIIEE   K VRMAH+AI+G
Sbjct  274  VDLFERLLPRHLEIIYEINRRFLEEVRAKFPGDEDRLRRMSIIEEGGDKQVRMAHLAIVG  333

Query  300  SHKVNGVAELHSDLIKTTIFKDFVKIYGPDKFTNVTNGITPRRWLHQANPRLSDLIASKL  359
            SH VNGVA LH++L+K T+FKDF ++Y P+KF N TNGITPRRWL  ANP L+ LI   +
Sbjct  334  SHSVNGVAALHTELLKETVFKDFYELY-PEKFNNKTNGITPRRWLLLANPELAALITETI  392

Query  360  GGYDFLKDLTLLDQLEAYVDDKAFRAEWSEIKTANKLRLAKHIKDTTGYSVNPNALFDVQ  419
             G  ++ DL  L +LE + DD AF   W  IK ANK RLA +IK TTG  V+P+++FDVQ
Sbjct  393  -GDGWITDLDQLKKLEPFADDPAFLERWRAIKQANKQRLAAYIKKTTGIEVDPDSIFDVQ  451

Query  420  VKRIHEYKRQQLNIFGVIHRYLIIKAMSREEKEKLVPRVSIFGGKAAPGYWMAKTIIHLI  479
            VKRIHEYKRQ LN   +I  Y  IK         +VPR  IFGGKAAPGY+MAK II LI
Sbjct  452  VKRIHEYKRQLLNALHIITLYNRIKEN---PNADIVPRTFIFGGKAAPGYYMAKLIIKLI  508

Query  480  NRVAAVVNNDADVGDLLKVIFIEDYNVSKAEIICPASDISEHISTAGTEASGTSNMKFVL  539
            N VA VVNND DV D LKV+F+ +YNVS AE I PA+D+SE ISTAG EASGT NMKF+L
Sbjct  509  NSVAEVVNNDPDVNDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFML  568

Query  540  NGGLIIGTCDGANVSLTRSTLFDMLLTGALQIEITREIGEQNIFLFGTLAEDVEELRHRH  599
            NG L IGT DGANV                  EI  E+GE+NIF+FG  AE+VE LR + 
Sbjct  569  NGALTIGTLDGANV------------------EIREEVGEENIFIFGLTAEEVEALRAKG  610

Query  600  -----FYGDFQLDPQLSKVFEAIRSDMF--GDASNFSALMSAIAEHGDYYLVSDDFNSYI  652
                 +Y   + +P+L +V + I S  F  GD   F  L+ ++   GD YLV  DF SY+
Sbjct  611  YNPRDYY---ESNPELKRVLDQIASGTFSPGDPGLFRPLVDSLLNGGDPYLVLADFESYV  667

Query  653  TTQEIVDEAFKNQDEWIAKSITSVARMGFFSTDRVISEYADSIWNI  698
              QE VD A+++++EW   SI ++AR G FS+DR I EYA+ IW +
Sbjct  668  DAQERVDAAYRDREEWTRMSILNIARSGKFSSDRTIREYAEDIWKV  713



Lambda      K        H        a         alpha
   0.320    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 904046270


Query= TCONS_00007553

Length=706
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase. ...  1232    0.0  


>CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase.  The members 
of this family catalyze the formation of glucose 1-phosphate 
from one of the following polyglucoses; glycogen, starch, 
glucan or maltodextrin.
Length=713

 Score = 1232 bits (3192),  Expect = 0.0, Method: Composition-based stats.
 Identities = 402/706 (57%), Positives = 490/706 (69%), Gaps = 36/706 (5%)

Query  1    MATLNYPAWGYGLRYRYGIFKQEIVDGYQVEIPDYWLDF-NPWEFPRHDITVDIQFYGWV  59
            +ATL  PA+GYG+RY YG+FKQ+IVDG+QVE+PD WL F NPWE  R ++ V+++F G V
Sbjct  36   LATLGLPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRFGNPWEIRRPEVAVEVKFGGRV  95

Query  60   RTYQDENGKTIHSWQDGEAVQAVAYDVPIPGYGTRTTNNLRLWSSKAASGEFDFQKFNAG  119
              Y D  G+    W  GE V AV YD PIPGYGT T N LRLWS++A S EFD   FNAG
Sbjct  96   EEYTDG-GRLRVRWVPGETVLAVPYDTPIPGYGTNTVNTLRLWSAEA-SEEFDLDAFNAG  153

Query  120  DYESAVADQQRAETISAVLYPNDNLERGKELRLKQQYFWCAASLYDIVRRFKKTKRAWSK  179
            DY  AV ++ RAE IS VLYPND+ E GKELRLKQQYF+ +ASL DI+RRFKK      +
Sbjct  154  DYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKGGGDLDE  213

Query  180  FPEQVAIQLNDTHPTLAIVELQRILIDQEGLEWDEAWTIVTKTFGYTNHTVLPEALEKWS  239
             P++VAIQLNDTHP LAI EL RIL+D+EGL WDEAW I TKTF YTNHT+LPEALEKW 
Sbjct  214  LPDKVAIQLNDTHPALAIPELMRILVDEEGLGWDEAWDITTKTFAYTNHTLLPEALEKWP  273

Query  240  VPLMQNLLPRHLQIIYDINLFFLQSVEKRFPSDREMLSRVSIIEESHPKMVRMAHIAIIG  299
            V L + LLPRHL+IIY+IN  FL+ V  +FP D + L R+SIIEE   K VRMAH+AI+G
Sbjct  274  VDLFERLLPRHLEIIYEINRRFLEEVRAKFPGDEDRLRRMSIIEEGGDKQVRMAHLAIVG  333

Query  300  SHKVNGVAELHSDLIKTTIFKDFVKIYGPDKFTNVTNGITPRRWLHQANPRLSDLIASKL  359
            SH VNGVA LH++L+K T+FKDF ++Y P+KF N TNGITPRRWL  ANP L+ LI   +
Sbjct  334  SHSVNGVAALHTELLKETVFKDFYELY-PEKFNNKTNGITPRRWLLLANPELAALITETI  392

Query  360  GGYDFLKDLTLLDQLEAYVDDKAFRAEWSEIKTANKLRLAKHIKDTTGYSVNPNALFDVQ  419
             G  ++ DL  L +LE + DD AF   W  IK ANK RLA +IK TTG  V+P+++FDVQ
Sbjct  393  -GDGWITDLDQLKKLEPFADDPAFLERWRAIKQANKQRLAAYIKKTTGIEVDPDSIFDVQ  451

Query  420  VKRIHEYKRQQLNIFGVIHRYLIIKAMSREEKEKLVPRVSIFGGKAAPGYWMAKTIIHLI  479
            VKRIHEYKRQ LN   +I  Y  IK         +VPR  IFGGKAAPGY+MAK II LI
Sbjct  452  VKRIHEYKRQLLNALHIITLYNRIKEN---PNADIVPRTFIFGGKAAPGYYMAKLIIKLI  508

Query  480  NRVAAVVNNDADVGDLLKVIFIEDYNVSKAEIICPASDISEHISTAGTEASGTSNMKFVL  539
            N VA VVNND DV D LKV+F+ +YNVS AE I PA+D+SE ISTAG EASGT NMKF+L
Sbjct  509  NSVAEVVNNDPDVNDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFML  568

Query  540  NGGLIIGTCDGANVSLTRSTLFDMLLTGALQIEITREIGEQNIFLFGTLAEDVEELRHRH  599
            NG L IGT DGANV                  EI  E+GE+NIF+FG  AE+VE LR + 
Sbjct  569  NGALTIGTLDGANV------------------EIREEVGEENIFIFGLTAEEVEALRAKG  610

Query  600  -----FYGDFQLDPQLSKVFEAIRSDMF--GDASNFSALMSAIAEHGDYYLVSDDFNSYI  652
                 +Y   + +P+L +V + I S  F  GD   F  L+ ++   GD YLV  DF SY+
Sbjct  611  YNPRDYY---ESNPELKRVLDQIASGTFSPGDPGLFRPLVDSLLNGGDPYLVLADFESYV  667

Query  653  TTQEIVDEAFKNQDEWIAKSITSVARMGFFSTDRVISEYADSIWNI  698
              QE VD A+++++EW   SI ++AR G FS+DR I EYA+ IW +
Sbjct  668  DAQERVDAAYRDREEWTRMSILNIARSGKFSSDRTIREYAEDIWKV  713



Lambda      K        H        a         alpha
   0.320    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 904046270


Query= TCONS_00002191

Length=1187


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1521899420


Query= TCONS_00007555

Length=707
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399466 pfam06472, ABC_membrane_2, ABC transporter transmembra...  391     5e-133
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  89.2    2e-21 


>CDD:399466 pfam06472, ABC_membrane_2, ABC transporter transmembrane region 
2.  This domain covers the transmembrane of a small family 
of ABC transporters and shares sequence similarity with pfam00664. 
Mutations in this domain in ABCD3 are believed responsible 
for Zellweger Syndrome-2; mutations in ABCD1 are responsible 
for recessive X-linked adrenoleukodystrophy. A Saccharomyces 
cerevisiae homolog is involved in the import of long-chain 
fatty acids.
Length=269

 Score = 391 bits (1007),  Expect = 5e-133, Method: Composition-based stats.
 Identities = 141/269 (52%), Positives = 193/269 (72%), Gaps = 0/269 (0%)

Query  98   LLKIVIPGWKSKEFRLLIGHSVFLVLRTMLSLYVAELDGRLVSSLVRGKGKDFLLGLTWW  157
            LLKI+ P W SKE  LL+  +  LVLRT LS+ VA+LDG++V +LV   G+ F+  L  W
Sbjct  1    LLKILFPRWFSKEAGLLLALAALLVLRTFLSVLVAQLDGQIVKALVAKNGRGFIRLLLKW  60

Query  158  MIVAVPATFTNSMLSYHQCKLALSYRKRLTDYIHDKYLSNMTFYAISALDDRVKNPDQLI  217
             ++AVPA+F NS L Y   +LAL +R RLT ++HD+YL   T+Y +S LD R+ NPDQ I
Sbjct  61   ALLAVPASFVNSALKYLTQRLALRFRTRLTRHLHDEYLKGRTYYKMSNLDGRIDNPDQRI  120

Query  218  TVDVSRFSDSLAELYSNLAKPILDMVIYNYSLSKSVGGEGLFIMSLLVQLSANIMRALTP  277
            T DV +F  SL++LYSNL KPILD++++ + L +  G  G  I+ L V LSA I+R L+P
Sbjct  121  TQDVEKFCSSLSDLYSNLLKPILDIILFTFRLWRLSGWRGPAILFLYVLLSAVILRRLSP  180

Query  278  PFGKYVADEARLEGEFRFLHSRLIDYSEEVALYHGQEAEKDTLDKGYFTLIKHVNRILRR  337
            PFGK VA+E +LEGEFR+LHSRLI  +EE+A Y G++ EK  L + + +LI H+ RILRR
Sbjct  181  PFGKLVAEEQKLEGEFRYLHSRLITNAEEIAFYRGEKREKKQLQRSFKSLIDHMRRILRR  240

Query  338  RLYHGFMEDFVIKYFWGALGLILCSMPVF  366
            RL++GF+EDFV+KY W  LG +L ++P+F
Sbjct  241  RLWYGFIEDFVLKYTWSILGYVLVALPIF  269


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 89.2 bits (222),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 78/153 (51%), Gaps = 18/153 (12%)

Query  481  LSFTVHPGDHLLIVGPNGCGKSSLFRILGGLWPVYGGKVK-----------KPRFDEIFY  529
            +S T++PG+ L +VGPNG GKS+L +++ GL     G +            K    EI Y
Sbjct  4    VSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIGY  63

Query  530  IPQRPYL-SRGTLRQQVIYPDGVREMRAKGVTDADLYEILSIVEIASVVDRPGGWDAEEE  588
            + Q P L  R T+R+ +     ++ + +K   DA   E L  + +  + DRP G      
Sbjct  64   VFQDPQLFPRLTVRENLRLGLLLKGL-SKREKDARAEEALEKLGLGDLADRPVGERPGT-  121

Query  589  WRDVLSGGLQQRIAMARLFYHRPKFAILDECTS  621
                LSGG +QR+A+AR    +PK  +LDE T+
Sbjct  122  ----LSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.322    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 905521060


Query= TCONS_00007556

Length=706
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase. ...  1232    0.0  


>CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase.  The members 
of this family catalyze the formation of glucose 1-phosphate 
from one of the following polyglucoses; glycogen, starch, 
glucan or maltodextrin.
Length=713

 Score = 1232 bits (3192),  Expect = 0.0, Method: Composition-based stats.
 Identities = 402/706 (57%), Positives = 490/706 (69%), Gaps = 36/706 (5%)

Query  1    MATLNYPAWGYGLRYRYGIFKQEIVDGYQVEIPDYWLDF-NPWEFPRHDITVDIQFYGWV  59
            +ATL  PA+GYG+RY YG+FKQ+IVDG+QVE+PD WL F NPWE  R ++ V+++F G V
Sbjct  36   LATLGLPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRFGNPWEIRRPEVAVEVKFGGRV  95

Query  60   RTYQDENGKTIHSWQDGEAVQAVAYDVPIPGYGTRTTNNLRLWSSKAASGEFDFQKFNAG  119
              Y D  G+    W  GE V AV YD PIPGYGT T N LRLWS++A S EFD   FNAG
Sbjct  96   EEYTDG-GRLRVRWVPGETVLAVPYDTPIPGYGTNTVNTLRLWSAEA-SEEFDLDAFNAG  153

Query  120  DYESAVADQQRAETISAVLYPNDNLERGKELRLKQQYFWCAASLYDIVRRFKKTKRAWSK  179
            DY  AV ++ RAE IS VLYPND+ E GKELRLKQQYF+ +ASL DI+RRFKK      +
Sbjct  154  DYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKGGGDLDE  213

Query  180  FPEQVAIQLNDTHPTLAIVELQRILIDQEGLEWDEAWTIVTKTFGYTNHTVLPEALEKWS  239
             P++VAIQLNDTHP LAI EL RIL+D+EGL WDEAW I TKTF YTNHT+LPEALEKW 
Sbjct  214  LPDKVAIQLNDTHPALAIPELMRILVDEEGLGWDEAWDITTKTFAYTNHTLLPEALEKWP  273

Query  240  VPLMQNLLPRHLQIIYDINLFFLQSVEKRFPSDREMLSRVSIIEESHPKMVRMAHIAIIG  299
            V L + LLPRHL+IIY+IN  FL+ V  +FP D + L R+SIIEE   K VRMAH+AI+G
Sbjct  274  VDLFERLLPRHLEIIYEINRRFLEEVRAKFPGDEDRLRRMSIIEEGGDKQVRMAHLAIVG  333

Query  300  SHKVNGVAELHSDLIKTTIFKDFVKIYGPDKFTNVTNGITPRRWLHQANPRLSDLIASKL  359
            SH VNGVA LH++L+K T+FKDF ++Y P+KF N TNGITPRRWL  ANP L+ LI   +
Sbjct  334  SHSVNGVAALHTELLKETVFKDFYELY-PEKFNNKTNGITPRRWLLLANPELAALITETI  392

Query  360  GGYDFLKDLTLLDQLEAYVDDKAFRAEWSEIKTANKLRLAKHIKDTTGYSVNPNALFDVQ  419
             G  ++ DL  L +LE + DD AF   W  IK ANK RLA +IK TTG  V+P+++FDVQ
Sbjct  393  -GDGWITDLDQLKKLEPFADDPAFLERWRAIKQANKQRLAAYIKKTTGIEVDPDSIFDVQ  451

Query  420  VKRIHEYKRQQLNIFGVIHRYLIIKAMSREEKEKLVPRVSIFGGKAAPGYWMAKTIIHLI  479
            VKRIHEYKRQ LN   +I  Y  IK         +VPR  IFGGKAAPGY+MAK II LI
Sbjct  452  VKRIHEYKRQLLNALHIITLYNRIKEN---PNADIVPRTFIFGGKAAPGYYMAKLIIKLI  508

Query  480  NRVAAVVNNDADVGDLLKVIFIEDYNVSKAEIICPASDISEHISTAGTEASGTSNMKFVL  539
            N VA VVNND DV D LKV+F+ +YNVS AE I PA+D+SE ISTAG EASGT NMKF+L
Sbjct  509  NSVAEVVNNDPDVNDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFML  568

Query  540  NGGLIIGTCDGANVSLTRSTLFDMLLTGALQIEITREIGEQNIFLFGTLAEDVEELRHRH  599
            NG L IGT DGANV                  EI  E+GE+NIF+FG  AE+VE LR + 
Sbjct  569  NGALTIGTLDGANV------------------EIREEVGEENIFIFGLTAEEVEALRAKG  610

Query  600  -----FYGDFQLDPQLSKVFEAIRSDMF--GDASNFSALMSAIAEHGDYYLVSDDFNSYI  652
                 +Y   + +P+L +V + I S  F  GD   F  L+ ++   GD YLV  DF SY+
Sbjct  611  YNPRDYY---ESNPELKRVLDQIASGTFSPGDPGLFRPLVDSLLNGGDPYLVLADFESYV  667

Query  653  TTQEIVDEAFKNQDEWIAKSITSVARMGFFSTDRVISEYADSIWNI  698
              QE VD A+++++EW   SI ++AR G FS+DR I EYA+ IW +
Sbjct  668  DAQERVDAAYRDREEWTRMSILNIARSGKFSSDRTIREYAEDIWKV  713



Lambda      K        H        a         alpha
   0.320    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 904046270


Query= TCONS_00007558

Length=706
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase. ...  1232    0.0  


>CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase.  The members 
of this family catalyze the formation of glucose 1-phosphate 
from one of the following polyglucoses; glycogen, starch, 
glucan or maltodextrin.
Length=713

 Score = 1232 bits (3192),  Expect = 0.0, Method: Composition-based stats.
 Identities = 402/706 (57%), Positives = 490/706 (69%), Gaps = 36/706 (5%)

Query  1    MATLNYPAWGYGLRYRYGIFKQEIVDGYQVEIPDYWLDF-NPWEFPRHDITVDIQFYGWV  59
            +ATL  PA+GYG+RY YG+FKQ+IVDG+QVE+PD WL F NPWE  R ++ V+++F G V
Sbjct  36   LATLGLPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRFGNPWEIRRPEVAVEVKFGGRV  95

Query  60   RTYQDENGKTIHSWQDGEAVQAVAYDVPIPGYGTRTTNNLRLWSSKAASGEFDFQKFNAG  119
              Y D  G+    W  GE V AV YD PIPGYGT T N LRLWS++A S EFD   FNAG
Sbjct  96   EEYTDG-GRLRVRWVPGETVLAVPYDTPIPGYGTNTVNTLRLWSAEA-SEEFDLDAFNAG  153

Query  120  DYESAVADQQRAETISAVLYPNDNLERGKELRLKQQYFWCAASLYDIVRRFKKTKRAWSK  179
            DY  AV ++ RAE IS VLYPND+ E GKELRLKQQYF+ +ASL DI+RRFKK      +
Sbjct  154  DYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKGGGDLDE  213

Query  180  FPEQVAIQLNDTHPTLAIVELQRILIDQEGLEWDEAWTIVTKTFGYTNHTVLPEALEKWS  239
             P++VAIQLNDTHP LAI EL RIL+D+EGL WDEAW I TKTF YTNHT+LPEALEKW 
Sbjct  214  LPDKVAIQLNDTHPALAIPELMRILVDEEGLGWDEAWDITTKTFAYTNHTLLPEALEKWP  273

Query  240  VPLMQNLLPRHLQIIYDINLFFLQSVEKRFPSDREMLSRVSIIEESHPKMVRMAHIAIIG  299
            V L + LLPRHL+IIY+IN  FL+ V  +FP D + L R+SIIEE   K VRMAH+AI+G
Sbjct  274  VDLFERLLPRHLEIIYEINRRFLEEVRAKFPGDEDRLRRMSIIEEGGDKQVRMAHLAIVG  333

Query  300  SHKVNGVAELHSDLIKTTIFKDFVKIYGPDKFTNVTNGITPRRWLHQANPRLSDLIASKL  359
            SH VNGVA LH++L+K T+FKDF ++Y P+KF N TNGITPRRWL  ANP L+ LI   +
Sbjct  334  SHSVNGVAALHTELLKETVFKDFYELY-PEKFNNKTNGITPRRWLLLANPELAALITETI  392

Query  360  GGYDFLKDLTLLDQLEAYVDDKAFRAEWSEIKTANKLRLAKHIKDTTGYSVNPNALFDVQ  419
             G  ++ DL  L +LE + DD AF   W  IK ANK RLA +IK TTG  V+P+++FDVQ
Sbjct  393  -GDGWITDLDQLKKLEPFADDPAFLERWRAIKQANKQRLAAYIKKTTGIEVDPDSIFDVQ  451

Query  420  VKRIHEYKRQQLNIFGVIHRYLIIKAMSREEKEKLVPRVSIFGGKAAPGYWMAKTIIHLI  479
            VKRIHEYKRQ LN   +I  Y  IK         +VPR  IFGGKAAPGY+MAK II LI
Sbjct  452  VKRIHEYKRQLLNALHIITLYNRIKEN---PNADIVPRTFIFGGKAAPGYYMAKLIIKLI  508

Query  480  NRVAAVVNNDADVGDLLKVIFIEDYNVSKAEIICPASDISEHISTAGTEASGTSNMKFVL  539
            N VA VVNND DV D LKV+F+ +YNVS AE I PA+D+SE ISTAG EASGT NMKF+L
Sbjct  509  NSVAEVVNNDPDVNDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFML  568

Query  540  NGGLIIGTCDGANVSLTRSTLFDMLLTGALQIEITREIGEQNIFLFGTLAEDVEELRHRH  599
            NG L IGT DGANV                  EI  E+GE+NIF+FG  AE+VE LR + 
Sbjct  569  NGALTIGTLDGANV------------------EIREEVGEENIFIFGLTAEEVEALRAKG  610

Query  600  -----FYGDFQLDPQLSKVFEAIRSDMF--GDASNFSALMSAIAEHGDYYLVSDDFNSYI  652
                 +Y   + +P+L +V + I S  F  GD   F  L+ ++   GD YLV  DF SY+
Sbjct  611  YNPRDYY---ESNPELKRVLDQIASGTFSPGDPGLFRPLVDSLLNGGDPYLVLADFESYV  667

Query  653  TTQEIVDEAFKNQDEWIAKSITSVARMGFFSTDRVISEYADSIWNI  698
              QE VD A+++++EW   SI ++AR G FS+DR I EYA+ IW +
Sbjct  668  DAQERVDAAYRDREEWTRMSILNIARSGKFSSDRTIREYAEDIWKV  713



Lambda      K        H        a         alpha
   0.320    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 904046270


Query= TCONS_00007557

Length=706
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase. ...  1232    0.0  


>CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase.  The members 
of this family catalyze the formation of glucose 1-phosphate 
from one of the following polyglucoses; glycogen, starch, 
glucan or maltodextrin.
Length=713

 Score = 1232 bits (3192),  Expect = 0.0, Method: Composition-based stats.
 Identities = 402/706 (57%), Positives = 490/706 (69%), Gaps = 36/706 (5%)

Query  1    MATLNYPAWGYGLRYRYGIFKQEIVDGYQVEIPDYWLDF-NPWEFPRHDITVDIQFYGWV  59
            +ATL  PA+GYG+RY YG+FKQ+IVDG+QVE+PD WL F NPWE  R ++ V+++F G V
Sbjct  36   LATLGLPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRFGNPWEIRRPEVAVEVKFGGRV  95

Query  60   RTYQDENGKTIHSWQDGEAVQAVAYDVPIPGYGTRTTNNLRLWSSKAASGEFDFQKFNAG  119
              Y D  G+    W  GE V AV YD PIPGYGT T N LRLWS++A S EFD   FNAG
Sbjct  96   EEYTDG-GRLRVRWVPGETVLAVPYDTPIPGYGTNTVNTLRLWSAEA-SEEFDLDAFNAG  153

Query  120  DYESAVADQQRAETISAVLYPNDNLERGKELRLKQQYFWCAASLYDIVRRFKKTKRAWSK  179
            DY  AV ++ RAE IS VLYPND+ E GKELRLKQQYF+ +ASL DI+RRFKK      +
Sbjct  154  DYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKGGGDLDE  213

Query  180  FPEQVAIQLNDTHPTLAIVELQRILIDQEGLEWDEAWTIVTKTFGYTNHTVLPEALEKWS  239
             P++VAIQLNDTHP LAI EL RIL+D+EGL WDEAW I TKTF YTNHT+LPEALEKW 
Sbjct  214  LPDKVAIQLNDTHPALAIPELMRILVDEEGLGWDEAWDITTKTFAYTNHTLLPEALEKWP  273

Query  240  VPLMQNLLPRHLQIIYDINLFFLQSVEKRFPSDREMLSRVSIIEESHPKMVRMAHIAIIG  299
            V L + LLPRHL+IIY+IN  FL+ V  +FP D + L R+SIIEE   K VRMAH+AI+G
Sbjct  274  VDLFERLLPRHLEIIYEINRRFLEEVRAKFPGDEDRLRRMSIIEEGGDKQVRMAHLAIVG  333

Query  300  SHKVNGVAELHSDLIKTTIFKDFVKIYGPDKFTNVTNGITPRRWLHQANPRLSDLIASKL  359
            SH VNGVA LH++L+K T+FKDF ++Y P+KF N TNGITPRRWL  ANP L+ LI   +
Sbjct  334  SHSVNGVAALHTELLKETVFKDFYELY-PEKFNNKTNGITPRRWLLLANPELAALITETI  392

Query  360  GGYDFLKDLTLLDQLEAYVDDKAFRAEWSEIKTANKLRLAKHIKDTTGYSVNPNALFDVQ  419
             G  ++ DL  L +LE + DD AF   W  IK ANK RLA +IK TTG  V+P+++FDVQ
Sbjct  393  -GDGWITDLDQLKKLEPFADDPAFLERWRAIKQANKQRLAAYIKKTTGIEVDPDSIFDVQ  451

Query  420  VKRIHEYKRQQLNIFGVIHRYLIIKAMSREEKEKLVPRVSIFGGKAAPGYWMAKTIIHLI  479
            VKRIHEYKRQ LN   +I  Y  IK         +VPR  IFGGKAAPGY+MAK II LI
Sbjct  452  VKRIHEYKRQLLNALHIITLYNRIKEN---PNADIVPRTFIFGGKAAPGYYMAKLIIKLI  508

Query  480  NRVAAVVNNDADVGDLLKVIFIEDYNVSKAEIICPASDISEHISTAGTEASGTSNMKFVL  539
            N VA VVNND DV D LKV+F+ +YNVS AE I PA+D+SE ISTAG EASGT NMKF+L
Sbjct  509  NSVAEVVNNDPDVNDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFML  568

Query  540  NGGLIIGTCDGANVSLTRSTLFDMLLTGALQIEITREIGEQNIFLFGTLAEDVEELRHRH  599
            NG L IGT DGANV                  EI  E+GE+NIF+FG  AE+VE LR + 
Sbjct  569  NGALTIGTLDGANV------------------EIREEVGEENIFIFGLTAEEVEALRAKG  610

Query  600  -----FYGDFQLDPQLSKVFEAIRSDMF--GDASNFSALMSAIAEHGDYYLVSDDFNSYI  652
                 +Y   + +P+L +V + I S  F  GD   F  L+ ++   GD YLV  DF SY+
Sbjct  611  YNPRDYY---ESNPELKRVLDQIASGTFSPGDPGLFRPLVDSLLNGGDPYLVLADFESYV  667

Query  653  TTQEIVDEAFKNQDEWIAKSITSVARMGFFSTDRVISEYADSIWNI  698
              QE VD A+++++EW   SI ++AR G FS+DR I EYA+ IW +
Sbjct  668  DAQERVDAAYRDREEWTRMSILNIARSGKFSSDRTIREYAEDIWKV  713



Lambda      K        H        a         alpha
   0.320    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 904046270


Query= TCONS_00007559

Length=706
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase. ...  1232    0.0  


>CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase.  The members 
of this family catalyze the formation of glucose 1-phosphate 
from one of the following polyglucoses; glycogen, starch, 
glucan or maltodextrin.
Length=713

 Score = 1232 bits (3192),  Expect = 0.0, Method: Composition-based stats.
 Identities = 402/706 (57%), Positives = 490/706 (69%), Gaps = 36/706 (5%)

Query  1    MATLNYPAWGYGLRYRYGIFKQEIVDGYQVEIPDYWLDF-NPWEFPRHDITVDIQFYGWV  59
            +ATL  PA+GYG+RY YG+FKQ+IVDG+QVE+PD WL F NPWE  R ++ V+++F G V
Sbjct  36   LATLGLPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRFGNPWEIRRPEVAVEVKFGGRV  95

Query  60   RTYQDENGKTIHSWQDGEAVQAVAYDVPIPGYGTRTTNNLRLWSSKAASGEFDFQKFNAG  119
              Y D  G+    W  GE V AV YD PIPGYGT T N LRLWS++A S EFD   FNAG
Sbjct  96   EEYTDG-GRLRVRWVPGETVLAVPYDTPIPGYGTNTVNTLRLWSAEA-SEEFDLDAFNAG  153

Query  120  DYESAVADQQRAETISAVLYPNDNLERGKELRLKQQYFWCAASLYDIVRRFKKTKRAWSK  179
            DY  AV ++ RAE IS VLYPND+ E GKELRLKQQYF+ +ASL DI+RRFKK      +
Sbjct  154  DYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKGGGDLDE  213

Query  180  FPEQVAIQLNDTHPTLAIVELQRILIDQEGLEWDEAWTIVTKTFGYTNHTVLPEALEKWS  239
             P++VAIQLNDTHP LAI EL RIL+D+EGL WDEAW I TKTF YTNHT+LPEALEKW 
Sbjct  214  LPDKVAIQLNDTHPALAIPELMRILVDEEGLGWDEAWDITTKTFAYTNHTLLPEALEKWP  273

Query  240  VPLMQNLLPRHLQIIYDINLFFLQSVEKRFPSDREMLSRVSIIEESHPKMVRMAHIAIIG  299
            V L + LLPRHL+IIY+IN  FL+ V  +FP D + L R+SIIEE   K VRMAH+AI+G
Sbjct  274  VDLFERLLPRHLEIIYEINRRFLEEVRAKFPGDEDRLRRMSIIEEGGDKQVRMAHLAIVG  333

Query  300  SHKVNGVAELHSDLIKTTIFKDFVKIYGPDKFTNVTNGITPRRWLHQANPRLSDLIASKL  359
            SH VNGVA LH++L+K T+FKDF ++Y P+KF N TNGITPRRWL  ANP L+ LI   +
Sbjct  334  SHSVNGVAALHTELLKETVFKDFYELY-PEKFNNKTNGITPRRWLLLANPELAALITETI  392

Query  360  GGYDFLKDLTLLDQLEAYVDDKAFRAEWSEIKTANKLRLAKHIKDTTGYSVNPNALFDVQ  419
             G  ++ DL  L +LE + DD AF   W  IK ANK RLA +IK TTG  V+P+++FDVQ
Sbjct  393  -GDGWITDLDQLKKLEPFADDPAFLERWRAIKQANKQRLAAYIKKTTGIEVDPDSIFDVQ  451

Query  420  VKRIHEYKRQQLNIFGVIHRYLIIKAMSREEKEKLVPRVSIFGGKAAPGYWMAKTIIHLI  479
            VKRIHEYKRQ LN   +I  Y  IK         +VPR  IFGGKAAPGY+MAK II LI
Sbjct  452  VKRIHEYKRQLLNALHIITLYNRIKEN---PNADIVPRTFIFGGKAAPGYYMAKLIIKLI  508

Query  480  NRVAAVVNNDADVGDLLKVIFIEDYNVSKAEIICPASDISEHISTAGTEASGTSNMKFVL  539
            N VA VVNND DV D LKV+F+ +YNVS AE I PA+D+SE ISTAG EASGT NMKF+L
Sbjct  509  NSVAEVVNNDPDVNDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFML  568

Query  540  NGGLIIGTCDGANVSLTRSTLFDMLLTGALQIEITREIGEQNIFLFGTLAEDVEELRHRH  599
            NG L IGT DGANV                  EI  E+GE+NIF+FG  AE+VE LR + 
Sbjct  569  NGALTIGTLDGANV------------------EIREEVGEENIFIFGLTAEEVEALRAKG  610

Query  600  -----FYGDFQLDPQLSKVFEAIRSDMF--GDASNFSALMSAIAEHGDYYLVSDDFNSYI  652
                 +Y   + +P+L +V + I S  F  GD   F  L+ ++   GD YLV  DF SY+
Sbjct  611  YNPRDYY---ESNPELKRVLDQIASGTFSPGDPGLFRPLVDSLLNGGDPYLVLADFESYV  667

Query  653  TTQEIVDEAFKNQDEWIAKSITSVARMGFFSTDRVISEYADSIWNI  698
              QE VD A+++++EW   SI ++AR G FS+DR I EYA+ IW +
Sbjct  668  DAQERVDAAYRDREEWTRMSILNIARSGKFSSDRTIREYAEDIWKV  713



Lambda      K        H        a         alpha
   0.320    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 904046270


Query= TCONS_00002192

Length=706
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase. ...  1232    0.0  


>CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase.  The members 
of this family catalyze the formation of glucose 1-phosphate 
from one of the following polyglucoses; glycogen, starch, 
glucan or maltodextrin.
Length=713

 Score = 1232 bits (3192),  Expect = 0.0, Method: Composition-based stats.
 Identities = 402/706 (57%), Positives = 490/706 (69%), Gaps = 36/706 (5%)

Query  1    MATLNYPAWGYGLRYRYGIFKQEIVDGYQVEIPDYWLDF-NPWEFPRHDITVDIQFYGWV  59
            +ATL  PA+GYG+RY YG+FKQ+IVDG+QVE+PD WL F NPWE  R ++ V+++F G V
Sbjct  36   LATLGLPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRFGNPWEIRRPEVAVEVKFGGRV  95

Query  60   RTYQDENGKTIHSWQDGEAVQAVAYDVPIPGYGTRTTNNLRLWSSKAASGEFDFQKFNAG  119
              Y D  G+    W  GE V AV YD PIPGYGT T N LRLWS++A S EFD   FNAG
Sbjct  96   EEYTDG-GRLRVRWVPGETVLAVPYDTPIPGYGTNTVNTLRLWSAEA-SEEFDLDAFNAG  153

Query  120  DYESAVADQQRAETISAVLYPNDNLERGKELRLKQQYFWCAASLYDIVRRFKKTKRAWSK  179
            DY  AV ++ RAE IS VLYPND+ E GKELRLKQQYF+ +ASL DI+RRFKK      +
Sbjct  154  DYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKGGGDLDE  213

Query  180  FPEQVAIQLNDTHPTLAIVELQRILIDQEGLEWDEAWTIVTKTFGYTNHTVLPEALEKWS  239
             P++VAIQLNDTHP LAI EL RIL+D+EGL WDEAW I TKTF YTNHT+LPEALEKW 
Sbjct  214  LPDKVAIQLNDTHPALAIPELMRILVDEEGLGWDEAWDITTKTFAYTNHTLLPEALEKWP  273

Query  240  VPLMQNLLPRHLQIIYDINLFFLQSVEKRFPSDREMLSRVSIIEESHPKMVRMAHIAIIG  299
            V L + LLPRHL+IIY+IN  FL+ V  +FP D + L R+SIIEE   K VRMAH+AI+G
Sbjct  274  VDLFERLLPRHLEIIYEINRRFLEEVRAKFPGDEDRLRRMSIIEEGGDKQVRMAHLAIVG  333

Query  300  SHKVNGVAELHSDLIKTTIFKDFVKIYGPDKFTNVTNGITPRRWLHQANPRLSDLIASKL  359
            SH VNGVA LH++L+K T+FKDF ++Y P+KF N TNGITPRRWL  ANP L+ LI   +
Sbjct  334  SHSVNGVAALHTELLKETVFKDFYELY-PEKFNNKTNGITPRRWLLLANPELAALITETI  392

Query  360  GGYDFLKDLTLLDQLEAYVDDKAFRAEWSEIKTANKLRLAKHIKDTTGYSVNPNALFDVQ  419
             G  ++ DL  L +LE + DD AF   W  IK ANK RLA +IK TTG  V+P+++FDVQ
Sbjct  393  -GDGWITDLDQLKKLEPFADDPAFLERWRAIKQANKQRLAAYIKKTTGIEVDPDSIFDVQ  451

Query  420  VKRIHEYKRQQLNIFGVIHRYLIIKAMSREEKEKLVPRVSIFGGKAAPGYWMAKTIIHLI  479
            VKRIHEYKRQ LN   +I  Y  IK         +VPR  IFGGKAAPGY+MAK II LI
Sbjct  452  VKRIHEYKRQLLNALHIITLYNRIKEN---PNADIVPRTFIFGGKAAPGYYMAKLIIKLI  508

Query  480  NRVAAVVNNDADVGDLLKVIFIEDYNVSKAEIICPASDISEHISTAGTEASGTSNMKFVL  539
            N VA VVNND DV D LKV+F+ +YNVS AE I PA+D+SE ISTAG EASGT NMKF+L
Sbjct  509  NSVAEVVNNDPDVNDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFML  568

Query  540  NGGLIIGTCDGANVSLTRSTLFDMLLTGALQIEITREIGEQNIFLFGTLAEDVEELRHRH  599
            NG L IGT DGANV                  EI  E+GE+NIF+FG  AE+VE LR + 
Sbjct  569  NGALTIGTLDGANV------------------EIREEVGEENIFIFGLTAEEVEALRAKG  610

Query  600  -----FYGDFQLDPQLSKVFEAIRSDMF--GDASNFSALMSAIAEHGDYYLVSDDFNSYI  652
                 +Y   + +P+L +V + I S  F  GD   F  L+ ++   GD YLV  DF SY+
Sbjct  611  YNPRDYY---ESNPELKRVLDQIASGTFSPGDPGLFRPLVDSLLNGGDPYLVLADFESYV  667

Query  653  TTQEIVDEAFKNQDEWIAKSITSVARMGFFSTDRVISEYADSIWNI  698
              QE VD A+++++EW   SI ++AR G FS+DR I EYA+ IW +
Sbjct  668  DAQERVDAAYRDREEWTRMSILNIARSGKFSSDRTIREYAEDIWKV  713



Lambda      K        H        a         alpha
   0.320    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 904046270


Query= TCONS_00007560

Length=706
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase. ...  1232    0.0  


>CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase.  The members 
of this family catalyze the formation of glucose 1-phosphate 
from one of the following polyglucoses; glycogen, starch, 
glucan or maltodextrin.
Length=713

 Score = 1232 bits (3192),  Expect = 0.0, Method: Composition-based stats.
 Identities = 402/706 (57%), Positives = 490/706 (69%), Gaps = 36/706 (5%)

Query  1    MATLNYPAWGYGLRYRYGIFKQEIVDGYQVEIPDYWLDF-NPWEFPRHDITVDIQFYGWV  59
            +ATL  PA+GYG+RY YG+FKQ+IVDG+QVE+PD WL F NPWE  R ++ V+++F G V
Sbjct  36   LATLGLPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRFGNPWEIRRPEVAVEVKFGGRV  95

Query  60   RTYQDENGKTIHSWQDGEAVQAVAYDVPIPGYGTRTTNNLRLWSSKAASGEFDFQKFNAG  119
              Y D  G+    W  GE V AV YD PIPGYGT T N LRLWS++A S EFD   FNAG
Sbjct  96   EEYTDG-GRLRVRWVPGETVLAVPYDTPIPGYGTNTVNTLRLWSAEA-SEEFDLDAFNAG  153

Query  120  DYESAVADQQRAETISAVLYPNDNLERGKELRLKQQYFWCAASLYDIVRRFKKTKRAWSK  179
            DY  AV ++ RAE IS VLYPND+ E GKELRLKQQYF+ +ASL DI+RRFKK      +
Sbjct  154  DYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKGGGDLDE  213

Query  180  FPEQVAIQLNDTHPTLAIVELQRILIDQEGLEWDEAWTIVTKTFGYTNHTVLPEALEKWS  239
             P++VAIQLNDTHP LAI EL RIL+D+EGL WDEAW I TKTF YTNHT+LPEALEKW 
Sbjct  214  LPDKVAIQLNDTHPALAIPELMRILVDEEGLGWDEAWDITTKTFAYTNHTLLPEALEKWP  273

Query  240  VPLMQNLLPRHLQIIYDINLFFLQSVEKRFPSDREMLSRVSIIEESHPKMVRMAHIAIIG  299
            V L + LLPRHL+IIY+IN  FL+ V  +FP D + L R+SIIEE   K VRMAH+AI+G
Sbjct  274  VDLFERLLPRHLEIIYEINRRFLEEVRAKFPGDEDRLRRMSIIEEGGDKQVRMAHLAIVG  333

Query  300  SHKVNGVAELHSDLIKTTIFKDFVKIYGPDKFTNVTNGITPRRWLHQANPRLSDLIASKL  359
            SH VNGVA LH++L+K T+FKDF ++Y P+KF N TNGITPRRWL  ANP L+ LI   +
Sbjct  334  SHSVNGVAALHTELLKETVFKDFYELY-PEKFNNKTNGITPRRWLLLANPELAALITETI  392

Query  360  GGYDFLKDLTLLDQLEAYVDDKAFRAEWSEIKTANKLRLAKHIKDTTGYSVNPNALFDVQ  419
             G  ++ DL  L +LE + DD AF   W  IK ANK RLA +IK TTG  V+P+++FDVQ
Sbjct  393  -GDGWITDLDQLKKLEPFADDPAFLERWRAIKQANKQRLAAYIKKTTGIEVDPDSIFDVQ  451

Query  420  VKRIHEYKRQQLNIFGVIHRYLIIKAMSREEKEKLVPRVSIFGGKAAPGYWMAKTIIHLI  479
            VKRIHEYKRQ LN   +I  Y  IK         +VPR  IFGGKAAPGY+MAK II LI
Sbjct  452  VKRIHEYKRQLLNALHIITLYNRIKEN---PNADIVPRTFIFGGKAAPGYYMAKLIIKLI  508

Query  480  NRVAAVVNNDADVGDLLKVIFIEDYNVSKAEIICPASDISEHISTAGTEASGTSNMKFVL  539
            N VA VVNND DV D LKV+F+ +YNVS AE I PA+D+SE ISTAG EASGT NMKF+L
Sbjct  509  NSVAEVVNNDPDVNDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFML  568

Query  540  NGGLIIGTCDGANVSLTRSTLFDMLLTGALQIEITREIGEQNIFLFGTLAEDVEELRHRH  599
            NG L IGT DGANV                  EI  E+GE+NIF+FG  AE+VE LR + 
Sbjct  569  NGALTIGTLDGANV------------------EIREEVGEENIFIFGLTAEEVEALRAKG  610

Query  600  -----FYGDFQLDPQLSKVFEAIRSDMF--GDASNFSALMSAIAEHGDYYLVSDDFNSYI  652
                 +Y   + +P+L +V + I S  F  GD   F  L+ ++   GD YLV  DF SY+
Sbjct  611  YNPRDYY---ESNPELKRVLDQIASGTFSPGDPGLFRPLVDSLLNGGDPYLVLADFESYV  667

Query  653  TTQEIVDEAFKNQDEWIAKSITSVARMGFFSTDRVISEYADSIWNI  698
              QE VD A+++++EW   SI ++AR G FS+DR I EYA+ IW +
Sbjct  668  DAQERVDAAYRDREEWTRMSILNIARSGKFSSDRTIREYAEDIWKV  713



Lambda      K        H        a         alpha
   0.320    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 904046270


Query= TCONS_00007561

Length=1194


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1531673086


Query= TCONS_00002193

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase. ...  1070    0.0  


>CDD:459770 pfam00343, Phosphorylase, Carbohydrate phosphorylase.  The members 
of this family catalyze the formation of glucose 1-phosphate 
from one of the following polyglucoses; glycogen, starch, 
glucan or maltodextrin.
Length=713

 Score = 1070 bits (2770),  Expect = 0.0, Method: Composition-based stats.
 Identities = 339/548 (62%), Positives = 402/548 (73%), Gaps = 8/548 (1%)

Query  1    MATLNYPAWGYGLRYRYGIFKQEIVDGYQVEIPDYWLDF-NPWEFPRHDITVDIQFYGWV  59
            +ATL  PA+GYG+RY YG+FKQ+IVDG+QVE+PD WL F NPWE  R ++ V+++F G V
Sbjct  36   LATLGLPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRFGNPWEIRRPEVAVEVKFGGRV  95

Query  60   RTYQDENGKTIHSWQDGEAVQAVAYDVPIPGYGTRTTNNLRLWSSKAASGEFDFQKFNAG  119
              Y D  G+    W  GE V AV YD PIPGYGT T N LRLWS++A S EFD   FNAG
Sbjct  96   EEYTDG-GRLRVRWVPGETVLAVPYDTPIPGYGTNTVNTLRLWSAEA-SEEFDLDAFNAG  153

Query  120  DYESAVADQQRAETISAVLYPNDNLERGKELRLKQQYFWCAASLYDIVRRFKKTKRAWSK  179
            DY  AV ++ RAE IS VLYPND+ E GKELRLKQQYF+ +ASL DI+RRFKK      +
Sbjct  154  DYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKGGGDLDE  213

Query  180  FPEQVAIQLNDTHPTLAIVELQRILIDQEGLEWDEAWTIVTKTFGYTNHTVLPEALEKWS  239
             P++VAIQLNDTHP LAI EL RIL+D+EGL WDEAW I TKTF YTNHT+LPEALEKW 
Sbjct  214  LPDKVAIQLNDTHPALAIPELMRILVDEEGLGWDEAWDITTKTFAYTNHTLLPEALEKWP  273

Query  240  VPLMQNLLPRHLQIIYDINLFFLQSVEKRFPSDREMLSRVSIIEESHPKMVRMAHIAIIG  299
            V L + LLPRHL+IIY+IN  FL+ V  +FP D + L R+SIIEE   K VRMAH+AI+G
Sbjct  274  VDLFERLLPRHLEIIYEINRRFLEEVRAKFPGDEDRLRRMSIIEEGGDKQVRMAHLAIVG  333

Query  300  SHKVNGVAELHSDLIKTTIFKDFVKIYGPDKFTNVTNGITPRRWLHQANPRLSDLIASKL  359
            SH VNGVA LH++L+K T+FKDF ++Y P+KF N TNGITPRRWL  ANP L+ LI   +
Sbjct  334  SHSVNGVAALHTELLKETVFKDFYELY-PEKFNNKTNGITPRRWLLLANPELAALITETI  392

Query  360  GGYDFLKDLTLLDQLEAYVDDKAFRAEWSEIKTANKLRLAKHIKDTTGYSVNPNALFDVQ  419
             G  ++ DL  L +LE + DD AF   W  IK ANK RLA +IK TTG  V+P+++FDVQ
Sbjct  393  -GDGWITDLDQLKKLEPFADDPAFLERWRAIKQANKQRLAAYIKKTTGIEVDPDSIFDVQ  451

Query  420  VKRIHEYKRQQLNIFGVIHRYLIIKAMSREEKEKLVPRVSIFGGKAAPGYWMAKTIIHLI  479
            VKRIHEYKRQ LN   +I  Y  IK         +VPR  IFGGKAAPGY+MAK II LI
Sbjct  452  VKRIHEYKRQLLNALHIITLYNRIKEN---PNADIVPRTFIFGGKAAPGYYMAKLIIKLI  508

Query  480  NRVAAVVNNDADVGDLLKVIFIEDYNVSKAEIICPASDISEHISTAGTEASGTSNMKFVL  539
            N VA VVNND DV D LKV+F+ +YNVS AE I PA+D+SE ISTAG EASGT NMKF+L
Sbjct  509  NSVAEVVNNDPDVNDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFML  568

Query  540  NGGLIIGT  547
            NG L IGT
Sbjct  569  NGALTIGT  576



Lambda      K        H        a         alpha
   0.320    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 687436880


Query= TCONS_00002194

Length=366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  176     2e-54
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            112     1e-29


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 176 bits (449),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 81/282 (29%), Positives = 120/282 (43%), Gaps = 67/282 (24%)

Query  20   YTDLQPVGMGAFGLVCSARDQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHENI  79
            Y  L+ +G G+FG V  A+ + TG+ VA+KKI K        K   RE+K+LK L H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  80   ISLSDIFISPLEDIYFVTELL-GTDLHRLLTSR-PLEKQFIQYFLYQILRGLKYVHSAGV  137
            + L D F    +++Y V E + G  L  LL+ +    ++  ++ + QIL GL+       
Sbjct  61   VRLYDAFEDK-DNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES------  113

Query  138  VHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDI  197
                                            +T +V T +Y APE+ L    Y  +VD+
Sbjct  114  -----------------------------GSSLTTFVGTPWYMAPEV-LGGNPYGPKVDV  143

Query  198  WSAGCIFAEMLEGKPLFPGKDHVNQFSIITELLGTPPDDVIQTICSENTLRFVKSLPKRE  257
            WS GCI  E+L GKP FPG +    + +I                              +
Sbjct  144  WSLGCILYELLTGKPPFPGINGNEIYELII----------------------------DQ  175

Query  258  RQPLANKFKNADPEAVDLLERMLVFDPKKRIRAGEALAHEYL  299
                     N   EA DLL+++L  DP KR+ A +AL H + 
Sbjct  176  PYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 112 bits (284),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 19/193 (10%)

Query  23   LQPVGMGAFGLVCSAR----DQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHEN  78
             + +G GAFG V         + T   VAVK  +K  +     +    E  ++K L H N
Sbjct  4    GEKLGEGAFGEVYKGTLKGEGENTKIKVAVK-TLKEGADEEEREDFLEEASIMKKLDHPN  62

Query  79   IISLSDIFISPLEDIYFVTELL-GTDLH---RLLTSRPLEKQFIQYFLYQILRGLKYVHS  134
            I+ L  +  +  E +Y VTE + G DL    R    +   K  +     QI +G++Y+ S
Sbjct  63   IVKLLGV-CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQIAKGMEYLES  120

Query  135  AGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVST------RYYRAPEIMLTW  188
               VHRDL   N L++EN  +KI DFGL+R                  ++  APE +   
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLKDG  179

Query  189  QKYDVEVDIWSAG  201
             K+  + D+WS G
Sbjct  180  -KFTSKSDVWSFG  191



Lambda      K        H        a         alpha
   0.322    0.139    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00002195

Length=366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  176     2e-54
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            112     1e-29


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 176 bits (449),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 81/282 (29%), Positives = 120/282 (43%), Gaps = 67/282 (24%)

Query  20   YTDLQPVGMGAFGLVCSARDQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHENI  79
            Y  L+ +G G+FG V  A+ + TG+ VA+KKI K        K   RE+K+LK L H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  80   ISLSDIFISPLEDIYFVTELL-GTDLHRLLTSR-PLEKQFIQYFLYQILRGLKYVHSAGV  137
            + L D F    +++Y V E + G  L  LL+ +    ++  ++ + QIL GL+       
Sbjct  61   VRLYDAFEDK-DNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES------  113

Query  138  VHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDI  197
                                            +T +V T +Y APE+ L    Y  +VD+
Sbjct  114  -----------------------------GSSLTTFVGTPWYMAPEV-LGGNPYGPKVDV  143

Query  198  WSAGCIFAEMLEGKPLFPGKDHVNQFSIITELLGTPPDDVIQTICSENTLRFVKSLPKRE  257
            WS GCI  E+L GKP FPG +    + +I                              +
Sbjct  144  WSLGCILYELLTGKPPFPGINGNEIYELII----------------------------DQ  175

Query  258  RQPLANKFKNADPEAVDLLERMLVFDPKKRIRAGEALAHEYL  299
                     N   EA DLL+++L  DP KR+ A +AL H + 
Sbjct  176  PYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 112 bits (284),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 19/193 (10%)

Query  23   LQPVGMGAFGLVCSAR----DQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHEN  78
             + +G GAFG V         + T   VAVK  +K  +     +    E  ++K L H N
Sbjct  4    GEKLGEGAFGEVYKGTLKGEGENTKIKVAVK-TLKEGADEEEREDFLEEASIMKKLDHPN  62

Query  79   IISLSDIFISPLEDIYFVTELL-GTDLH---RLLTSRPLEKQFIQYFLYQILRGLKYVHS  134
            I+ L  +  +  E +Y VTE + G DL    R    +   K  +     QI +G++Y+ S
Sbjct  63   IVKLLGV-CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQIAKGMEYLES  120

Query  135  AGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVST------RYYRAPEIMLTW  188
               VHRDL   N L++EN  +KI DFGL+R                  ++  APE +   
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLKDG  179

Query  189  QKYDVEVDIWSAG  201
             K+  + D+WS G
Sbjct  180  -KFTSKSDVWSFG  191



Lambda      K        H        a         alpha
   0.322    0.139    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00007562

Length=110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  76.5    4e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 76.5 bits (189),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 29/84 (35%), Positives = 43/84 (51%), Gaps = 3/84 (4%)

Query  1    MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITEL  60
            +T +V T +Y APE+ L    Y  +VD+WS GCI  E+L GKP FPG +    + +I  +
Sbjct  117  LTTFVGTPWYMAPEV-LGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELI--I  173

Query  61   LGTPPDDVIQTICSENTLRFVKSL  84
                    + +  SE     +K L
Sbjct  174  DQPYAFPELPSNLSEEAKDLLKKL  197



Lambda      K        H        a         alpha
   0.321    0.139    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00007563

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  175     6e-54
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            112     2e-29


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 175 bits (446),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 81/282 (29%), Positives = 120/282 (43%), Gaps = 67/282 (24%)

Query  20   YTDLQPVGMGAFGLVCSARDQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHENI  79
            Y  L+ +G G+FG V  A+ + TG+ VA+KKI K        K   RE+K+LK L H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  80   ISLSDIFISPLEDIYFVTELL-GTDLHRLLTSR-PLEKQFIQYFLYQILRGLKYVHSAGV  137
            + L D F    +++Y V E + G  L  LL+ +    ++  ++ + QIL GL+       
Sbjct  61   VRLYDAFEDK-DNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES------  113

Query  138  VHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDI  197
                                            +T +V T +Y APE+ L    Y  +VD+
Sbjct  114  -----------------------------GSSLTTFVGTPWYMAPEV-LGGNPYGPKVDV  143

Query  198  WSAGCIFAEMLEGKPLFPGKDHVNQFSIITELLGTPPDDVIQTICSENTLRFVKSLPKRE  257
            WS GCI  E+L GKP FPG +    + +I                              +
Sbjct  144  WSLGCILYELLTGKPPFPGINGNEIYELII----------------------------DQ  175

Query  258  RQPLANKFKNADPEAVDLLERMLVFDPKKRIRAGEALAHEYL  299
                     N   EA DLL+++L  DP KR+ A +AL H + 
Sbjct  176  PYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 112 bits (282),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 19/193 (10%)

Query  23   LQPVGMGAFGLVCSAR----DQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHEN  78
             + +G GAFG V         + T   VAVK  +K  +     +    E  ++K L H N
Sbjct  4    GEKLGEGAFGEVYKGTLKGEGENTKIKVAVK-TLKEGADEEEREDFLEEASIMKKLDHPN  62

Query  79   IISLSDIFISPLEDIYFVTELL-GTDLH---RLLTSRPLEKQFIQYFLYQILRGLKYVHS  134
            I+ L  +  +  E +Y VTE + G DL    R    +   K  +     QI +G++Y+ S
Sbjct  63   IVKLLGV-CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQIAKGMEYLES  120

Query  135  AGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVST------RYYRAPEIMLTW  188
               VHRDL   N L++EN  +KI DFGL+R                  ++  APE +   
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLKDG  179

Query  189  QKYDVEVDIWSAG  201
             K+  + D+WS G
Sbjct  180  -KFTSKSDVWSFG  191



Lambda      K        H        a         alpha
   0.322    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00002196

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  175     3e-54
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            112     1e-29


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 175 bits (446),  Expect = 3e-54, Method: Composition-based stats.
 Identities = 81/282 (29%), Positives = 120/282 (43%), Gaps = 67/282 (24%)

Query  20   YTDLQPVGMGAFGLVCSARDQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHENI  79
            Y  L+ +G G+FG V  A+ + TG+ VA+KKI K        K   RE+K+LK L H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  80   ISLSDIFISPLEDIYFVTELL-GTDLHRLLTSR-PLEKQFIQYFLYQILRGLKYVHSAGV  137
            + L D F    +++Y V E + G  L  LL+ +    ++  ++ + QIL GL+       
Sbjct  61   VRLYDAFEDK-DNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES------  113

Query  138  VHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDI  197
                                            +T +V T +Y APE+ L    Y  +VD+
Sbjct  114  -----------------------------GSSLTTFVGTPWYMAPEV-LGGNPYGPKVDV  143

Query  198  WSAGCIFAEMLEGKPLFPGKDHVNQFSIITELLGTPPDDVIQTICSENTLRFVKSLPKRE  257
            WS GCI  E+L GKP FPG +    + +I                              +
Sbjct  144  WSLGCILYELLTGKPPFPGINGNEIYELII----------------------------DQ  175

Query  258  RQPLANKFKNADPEAVDLLERMLVFDPKKRIRAGEALAHEYL  299
                     N   EA DLL+++L  DP KR+ A +AL H + 
Sbjct  176  PYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 112 bits (282),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 19/193 (10%)

Query  23   LQPVGMGAFGLVCSAR----DQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHEN  78
             + +G GAFG V         + T   VAVK  +K  +     +    E  ++K L H N
Sbjct  4    GEKLGEGAFGEVYKGTLKGEGENTKIKVAVK-TLKEGADEEEREDFLEEASIMKKLDHPN  62

Query  79   IISLSDIFISPLEDIYFVTELL-GTDLH---RLLTSRPLEKQFIQYFLYQILRGLKYVHS  134
            I+ L  +  +  E +Y VTE + G DL    R    +   K  +     QI +G++Y+ S
Sbjct  63   IVKLLGV-CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQIAKGMEYLES  120

Query  135  AGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVST------RYYRAPEIMLTW  188
               VHRDL   N L++EN  +KI DFGL+R                  ++  APE +   
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLKDG  179

Query  189  QKYDVEVDIWSAG  201
             K+  + D+WS G
Sbjct  180  -KFTSKSDVWSFG  191



Lambda      K        H        a         alpha
   0.322    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00007564

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  102     7e-28


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 102 bits (257),  Expect = 7e-28, Method: Composition-based stats.
 Identities = 40/130 (31%), Positives = 57/130 (44%), Gaps = 29/130 (22%)

Query  1    MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITEL  60
            +T +V T +Y APE+ L    Y  +VD+WS GCI  E+L GKP FPG +    + +I   
Sbjct  117  LTTFVGTPWYMAPEV-LGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII--  173

Query  61   LGTPPDDVIQTICSENTLRFVKSLPKRERQPLANKFKNADPEAVDLLERMLVFDPKKRIR  120
                                       +         N   EA DLL+++L  DP KR+ 
Sbjct  174  --------------------------DQPYAFPELPSNLSEEAKDLLKKLLKKDPSKRLT  207

Query  121  AGEALAHEYL  130
            A +AL H + 
Sbjct  208  ATQALQHPWF  217



Lambda      K        H        a         alpha
   0.318    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00007566

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  169     6e-52
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            112     1e-29


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 169 bits (430),  Expect = 6e-52, Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 118/282 (42%), Gaps = 67/282 (24%)

Query  20   YTDLQPVGMGAFGLVCSARDQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHENI  79
            Y  L+ +G G+FG V  A+ + TG+ VA+KKI K        K   RE+K+LK L H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  80   ISLSDIFISPLEDIYFVTELL-GTDLHRLLTSR-PLEKQFIQYFLYQILRGLKYVHSAGV  137
            + L D F    +++Y V E + G  L  LL+ +    ++  ++ + QIL GL+       
Sbjct  61   VRLYDAFEDK-DNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES------  113

Query  138  VHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDI  197
                                            +T +V T +Y APE+ L    Y  +VD+
Sbjct  114  -----------------------------GSSLTTFVGTPWYMAPEV-LGGNPYGPKVDV  143

Query  198  WSAGCIFAEMLEGKPLFPGKDHVNQFSIITELLGTPPDDVIQTICSENVSGFVKSLPKRE  257
            WS GCI  E+L GKP FPG +    + +I                              +
Sbjct  144  WSLGCILYELLTGKPPFPGINGNEIYELII----------------------------DQ  175

Query  258  RQPLANKFKNADPEGTFLLERMLVFDPKKRIRAGEALAHEYL  299
                     N   E   LL+++L  DP KR+ A +AL H + 
Sbjct  176  PYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 112 bits (282),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 19/193 (10%)

Query  23   LQPVGMGAFGLVCSAR----DQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHEN  78
             + +G GAFG V         + T   VAVK  +K  +     +    E  ++K L H N
Sbjct  4    GEKLGEGAFGEVYKGTLKGEGENTKIKVAVK-TLKEGADEEEREDFLEEASIMKKLDHPN  62

Query  79   IISLSDIFISPLEDIYFVTELL-GTDLH---RLLTSRPLEKQFIQYFLYQILRGLKYVHS  134
            I+ L  +  +  E +Y VTE + G DL    R    +   K  +     QI +G++Y+ S
Sbjct  63   IVKLLGV-CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQIAKGMEYLES  120

Query  135  AGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVST------RYYRAPEIMLTW  188
               VHRDL   N L++EN  +KI DFGL+R                  ++  APE +   
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLKDG  179

Query  189  QKYDVEVDIWSAG  201
             K+  + D+WS G
Sbjct  180  -KFTSKSDVWSFG  191



Lambda      K        H        a         alpha
   0.322    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00007565

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  169     6e-52
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            109     9e-29


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 169 bits (430),  Expect = 6e-52, Method: Composition-based stats.
 Identities = 78/273 (29%), Positives = 115/273 (42%), Gaps = 67/273 (25%)

Query  2    GAFGLVCSARDQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHENIISLSDIFIS  61
            G+FG V  A+ + TG+ VA+KKI K        K   RE+K+LK L H NI+ L D F  
Sbjct  10   GSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRLYDAFED  69

Query  62   PLEDIYFVTELL-GTDLHRLLTSR-PLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSN  119
              +++Y V E + G  L  LL+ +    ++  ++ + QIL GL+                
Sbjct  70   K-DNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES---------------  113

Query  120  ILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAE  179
                                   +T +V T +Y APE+ L    Y  +VD+WS GCI  E
Sbjct  114  --------------------GSSLTTFVGTPWYMAPEV-LGGNPYGPKVDVWSLGCILYE  152

Query  180  MLEGKPLFPGKDHVNQFSIITELLGTPPDDVIQTICSENTLRFVKSLPKRERQPLANKFK  239
            +L GKP FPG +    + +I                              +         
Sbjct  153  LLTGKPPFPGINGNEIYELII----------------------------DQPYAFPELPS  184

Query  240  NADPEAVDLLERMLVFDPKKRIRAGEALAHEYL  272
            N   EA DLL+++L  DP KR+ A +AL H + 
Sbjct  185  NLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 109 bits (276),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 84/187 (45%), Gaps = 19/187 (10%)

Query  2    GAFGLVCSAR----DQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHENIISLSD  57
            GAFG V         + T   VAVK  +K  +     +    E  ++K L H NI+ L  
Sbjct  10   GAFGEVYKGTLKGEGENTKIKVAVK-TLKEGADEEEREDFLEEASIMKKLDHPNIVKLLG  68

Query  58   IFISPLEDIYFVTELL-GTDLH---RLLTSRPLEKQFIQYFLYQILRGLKYVHSAGVVHR  113
            +  +  E +Y VTE + G DL    R    +   K  +     QI +G++Y+ S   VHR
Sbjct  69   V-CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQIAKGMEYLESKNFVHR  126

Query  114  DLKPSNILINENCDLKICDFGLARIQDPQMTGYVST------RYYRAPEIMLTWQKYDVE  167
            DL   N L++EN  +KI DFGL+R                  ++  APE +    K+  +
Sbjct  127  DLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLKDG-KFTSK  184

Query  168  VDIWSAG  174
             D+WS G
Sbjct  185  SDVWSFG  191



Lambda      K        H        a         alpha
   0.321    0.139    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00007568

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  102     7e-28


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 102 bits (257),  Expect = 7e-28, Method: Composition-based stats.
 Identities = 40/130 (31%), Positives = 57/130 (44%), Gaps = 29/130 (22%)

Query  1    MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITEL  60
            +T +V T +Y APE+ L    Y  +VD+WS GCI  E+L GKP FPG +    + +I   
Sbjct  117  LTTFVGTPWYMAPEV-LGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII--  173

Query  61   LGTPPDDVIQTICSENTLRFVKSLPKRERQPLANKFKNADPEAVDLLERMLVFDPKKRIR  120
                                       +         N   EA DLL+++L  DP KR+ 
Sbjct  174  --------------------------DQPYAFPELPSNLSEEAKDLLKKLLKKDPSKRLT  207

Query  121  AGEALAHEYL  130
            A +AL H + 
Sbjct  208  ATQALQHPWF  217



Lambda      K        H        a         alpha
   0.318    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00007567

Length=182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  83.8    8e-21


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 83.8 bits (208),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 32/111 (29%), Positives = 45/111 (41%), Gaps = 28/111 (25%)

Query  5    QKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITELLGTPPDDVIQTICSENTLR  64
              Y  +VD+WS GCI  E+L GKP FPG +    + +I                      
Sbjct  135  NPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII---------------------  173

Query  65   FVKSLPKRERQPLANKFKNADPEAVDLLERMLVFDPKKRIRAGEALAHEYL  115
                    +         N   EA DLL+++L  DP KR+ A +AL H + 
Sbjct  174  -------DQPYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217



Lambda      K        H        a         alpha
   0.318    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00002197

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  148     1e-44
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            112     1e-30


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 148 bits (375),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 66/209 (32%), Positives = 98/209 (47%), Gaps = 39/209 (19%)

Query  20   YTDLQPVGMGAFGLVCSARDQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHENI  79
            Y  L+ +G G+FG V  A+ + TG+ VA+KKI K        K   RE+K+LK L H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  80   ISLSDIFISPLEDIYFVTELL-GTDLHRLLTSR-PLEKQFIQYFLYQILRGLKYVHSAGV  137
            + L D F    +++Y V E + G  L  LL+ +    ++  ++ + QIL GL+       
Sbjct  61   VRLYDAFEDK-DNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES------  113

Query  138  VHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDI  197
                                            +T +V T +Y APE+ L    Y  +VD+
Sbjct  114  -----------------------------GSSLTTFVGTPWYMAPEV-LGGNPYGPKVDV  143

Query  198  WSAGCIFAEMLEGKPLFPGKDHVNQFSII  226
            WS GCI  E+L GKP FPG +    + +I
Sbjct  144  WSLGCILYELLTGKPPFPGINGNEIYELI  172


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 112 bits (284),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 19/193 (10%)

Query  23   LQPVGMGAFGLVCSAR----DQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHEN  78
             + +G GAFG V         + T   VAVK  +K  +     +    E  ++K L H N
Sbjct  4    GEKLGEGAFGEVYKGTLKGEGENTKIKVAVK-TLKEGADEEEREDFLEEASIMKKLDHPN  62

Query  79   IISLSDIFISPLEDIYFVTELL-GTDLH---RLLTSRPLEKQFIQYFLYQILRGLKYVHS  134
            I+ L  +  +  E +Y VTE + G DL    R    +   K  +     QI +G++Y+ S
Sbjct  63   IVKLLGV-CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQIAKGMEYLES  120

Query  135  AGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVST------RYYRAPEIMLTW  188
               VHRDL   N L++EN  +KI DFGL+R                  ++  APE +   
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLKDG  179

Query  189  QKYDVEVDIWSAG  201
             K+  + D+WS G
Sbjct  180  -KFTSKSDVWSFG  191



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00002198

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  150     2e-45
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            112     2e-30


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 150 bits (381),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 70/236 (30%), Positives = 106/236 (45%), Gaps = 41/236 (17%)

Query  20   YTDLQPVGMGAFGLVCSARDQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHENI  79
            Y  L+ +G G+FG V  A+ + TG+ VA+KKI K        K   RE+K+LK L H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  80   ISLSDIFISPLEDIYFVTELL-GTDLHRLLTSR-PLEKQFIQYFLYQILRGLKYVHSAGV  137
            + L D F    +++Y V E + G  L  LL+ +    ++  ++ + QIL GL+       
Sbjct  61   VRLYDAFEDK-DNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES------  113

Query  138  VHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDI  197
                                            +T +V T +Y APE+ L    Y  +VD+
Sbjct  114  -----------------------------GSSLTTFVGTPWYMAPEV-LGGNPYGPKVDV  143

Query  198  WSAGCIFAEMLEGKPLFPGKDHVNQFSIITELLGTPPDDVIQTICSENTLRFVKSL  253
            WS GCI  E+L GKP FPG +    + +I  +        + +  SE     +K L
Sbjct  144  WSLGCILYELLTGKPPFPGINGNEIYELI--IDQPYAFPELPSNLSEEAKDLLKKL  197


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 112 bits (284),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 19/193 (10%)

Query  23   LQPVGMGAFGLVCSAR----DQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHEN  78
             + +G GAFG V         + T   VAVK  +K  +     +    E  ++K L H N
Sbjct  4    GEKLGEGAFGEVYKGTLKGEGENTKIKVAVK-TLKEGADEEEREDFLEEASIMKKLDHPN  62

Query  79   IISLSDIFISPLEDIYFVTELL-GTDLH---RLLTSRPLEKQFIQYFLYQILRGLKYVHS  134
            I+ L  +  +  E +Y VTE + G DL    R    +   K  +     QI +G++Y+ S
Sbjct  63   IVKLLGV-CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQIAKGMEYLES  120

Query  135  AGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVST------RYYRAPEIMLTW  188
               VHRDL   N L++EN  +KI DFGL+R                  ++  APE +   
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLKDG  179

Query  189  QKYDVEVDIWSAG  201
             K+  + D+WS G
Sbjct  180  -KFTSKSDVWSFG  191



Lambda      K        H        a         alpha
   0.324    0.141    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00007569

Length=366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  176     2e-54
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            112     1e-29


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 176 bits (449),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 81/282 (29%), Positives = 120/282 (43%), Gaps = 67/282 (24%)

Query  20   YTDLQPVGMGAFGLVCSARDQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHENI  79
            Y  L+ +G G+FG V  A+ + TG+ VA+KKI K        K   RE+K+LK L H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  80   ISLSDIFISPLEDIYFVTELL-GTDLHRLLTSR-PLEKQFIQYFLYQILRGLKYVHSAGV  137
            + L D F    +++Y V E + G  L  LL+ +    ++  ++ + QIL GL+       
Sbjct  61   VRLYDAFEDK-DNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES------  113

Query  138  VHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDI  197
                                            +T +V T +Y APE+ L    Y  +VD+
Sbjct  114  -----------------------------GSSLTTFVGTPWYMAPEV-LGGNPYGPKVDV  143

Query  198  WSAGCIFAEMLEGKPLFPGKDHVNQFSIITELLGTPPDDVIQTICSENTLRFVKSLPKRE  257
            WS GCI  E+L GKP FPG +    + +I                              +
Sbjct  144  WSLGCILYELLTGKPPFPGINGNEIYELII----------------------------DQ  175

Query  258  RQPLANKFKNADPEAVDLLERMLVFDPKKRIRAGEALAHEYL  299
                     N   EA DLL+++L  DP KR+ A +AL H + 
Sbjct  176  PYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 112 bits (284),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 19/193 (10%)

Query  23   LQPVGMGAFGLVCSAR----DQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHEN  78
             + +G GAFG V         + T   VAVK  +K  +     +    E  ++K L H N
Sbjct  4    GEKLGEGAFGEVYKGTLKGEGENTKIKVAVK-TLKEGADEEEREDFLEEASIMKKLDHPN  62

Query  79   IISLSDIFISPLEDIYFVTELL-GTDLH---RLLTSRPLEKQFIQYFLYQILRGLKYVHS  134
            I+ L  +  +  E +Y VTE + G DL    R    +   K  +     QI +G++Y+ S
Sbjct  63   IVKLLGV-CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQIAKGMEYLES  120

Query  135  AGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVST------RYYRAPEIMLTW  188
               VHRDL   N L++EN  +KI DFGL+R                  ++  APE +   
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLKDG  179

Query  189  QKYDVEVDIWSAG  201
             K+  + D+WS G
Sbjct  180  -KFTSKSDVWSFG  191



Lambda      K        H        a         alpha
   0.322    0.139    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00007570

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  169     6e-52
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            109     9e-29


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 169 bits (430),  Expect = 6e-52, Method: Composition-based stats.
 Identities = 78/273 (29%), Positives = 115/273 (42%), Gaps = 67/273 (25%)

Query  2    GAFGLVCSARDQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHENIISLSDIFIS  61
            G+FG V  A+ + TG+ VA+KKI K        K   RE+K+LK L H NI+ L D F  
Sbjct  10   GSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRLYDAFED  69

Query  62   PLEDIYFVTELL-GTDLHRLLTSR-PLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSN  119
              +++Y V E + G  L  LL+ +    ++  ++ + QIL GL+                
Sbjct  70   K-DNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES---------------  113

Query  120  ILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAE  179
                                   +T +V T +Y APE+ L    Y  +VD+WS GCI  E
Sbjct  114  --------------------GSSLTTFVGTPWYMAPEV-LGGNPYGPKVDVWSLGCILYE  152

Query  180  MLEGKPLFPGKDHVNQFSIITELLGTPPDDVIQTICSENTLRFVKSLPKRERQPLANKFK  239
            +L GKP FPG +    + +I                              +         
Sbjct  153  LLTGKPPFPGINGNEIYELII----------------------------DQPYAFPELPS  184

Query  240  NADPEAVDLLERMLVFDPKKRIRAGEALAHEYL  272
            N   EA DLL+++L  DP KR+ A +AL H + 
Sbjct  185  NLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 109 bits (276),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 84/187 (45%), Gaps = 19/187 (10%)

Query  2    GAFGLVCSAR----DQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHENIISLSD  57
            GAFG V         + T   VAVK  +K  +     +    E  ++K L H NI+ L  
Sbjct  10   GAFGEVYKGTLKGEGENTKIKVAVK-TLKEGADEEEREDFLEEASIMKKLDHPNIVKLLG  68

Query  58   IFISPLEDIYFVTELL-GTDLH---RLLTSRPLEKQFIQYFLYQILRGLKYVHSAGVVHR  113
            +  +  E +Y VTE + G DL    R    +   K  +     QI +G++Y+ S   VHR
Sbjct  69   V-CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQIAKGMEYLESKNFVHR  126

Query  114  DLKPSNILINENCDLKICDFGLARIQDPQMTGYVST------RYYRAPEIMLTWQKYDVE  167
            DL   N L++EN  +KI DFGL+R                  ++  APE +    K+  +
Sbjct  127  DLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLKDG-KFTSK  184

Query  168  VDIWSAG  174
             D+WS G
Sbjct  185  SDVWSFG  191



Lambda      K        H        a         alpha
   0.321    0.139    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00002199

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  148     1e-44
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            112     1e-30


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 148 bits (375),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 66/209 (32%), Positives = 98/209 (47%), Gaps = 39/209 (19%)

Query  20   YTDLQPVGMGAFGLVCSARDQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHENI  79
            Y  L+ +G G+FG V  A+ + TG+ VA+KKI K        K   RE+K+LK L H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  80   ISLSDIFISPLEDIYFVTELL-GTDLHRLLTSR-PLEKQFIQYFLYQILRGLKYVHSAGV  137
            + L D F    +++Y V E + G  L  LL+ +    ++  ++ + QIL GL+       
Sbjct  61   VRLYDAFEDK-DNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES------  113

Query  138  VHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDI  197
                                            +T +V T +Y APE+ L    Y  +VD+
Sbjct  114  -----------------------------GSSLTTFVGTPWYMAPEV-LGGNPYGPKVDV  143

Query  198  WSAGCIFAEMLEGKPLFPGKDHVNQFSII  226
            WS GCI  E+L GKP FPG +    + +I
Sbjct  144  WSLGCILYELLTGKPPFPGINGNEIYELI  172


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 112 bits (284),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 19/193 (10%)

Query  23   LQPVGMGAFGLVCSAR----DQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHEN  78
             + +G GAFG V         + T   VAVK  +K  +     +    E  ++K L H N
Sbjct  4    GEKLGEGAFGEVYKGTLKGEGENTKIKVAVK-TLKEGADEEEREDFLEEASIMKKLDHPN  62

Query  79   IISLSDIFISPLEDIYFVTELL-GTDLH---RLLTSRPLEKQFIQYFLYQILRGLKYVHS  134
            I+ L  +  +  E +Y VTE + G DL    R    +   K  +     QI +G++Y+ S
Sbjct  63   IVKLLGV-CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQIAKGMEYLES  120

Query  135  AGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVST------RYYRAPEIMLTW  188
               VHRDL   N L++EN  +KI DFGL+R                  ++  APE +   
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLKDG  179

Query  189  QKYDVEVDIWSAG  201
             K+  + D+WS G
Sbjct  180  -KFTSKSDVWSFG  191



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00007572

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  100     4e-27


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 100 bits (252),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 29/130 (22%)

Query  1    MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITEL  60
            +T +V T +Y APE+ L    Y  +VD+WS GCI  E+L GKP FPG +    + +I   
Sbjct  117  LTTFVGTPWYMAPEV-LGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII--  173

Query  61   LGTPPDDVIQTICSENTLRFVKSLPKRERQPLANKFKNADPEGVDLLERMLVFDPKKRIR  120
                                       +         N   E  DLL+++L  DP KR+ 
Sbjct  174  --------------------------DQPYAFPELPSNLSEEAKDLLKKLLKKDPSKRLT  207

Query  121  AGEALAHEYL  130
            A +AL H + 
Sbjct  208  ATQALQHPWF  217



Lambda      K        H        a         alpha
   0.318    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00007571

Length=366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  177     7e-55
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            114     3e-30


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 177 bits (452),  Expect = 7e-55, Method: Composition-based stats.
 Identities = 81/282 (29%), Positives = 121/282 (43%), Gaps = 67/282 (24%)

Query  20   YTDLQPVGMGAFGLVWSARDQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHENI  79
            Y  L+ +G G+FG V+ A+ + TG+ VA+KKI K        K   RE+K+LK L H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  80   ISLSDIFISPLEDIYFVTELL-GTDLHRLLTSR-PLEKQFIQYFLYQILRGLKYVHSAGV  137
            + L D F    +++Y V E + G  L  LL+ +    ++  ++ + QIL GL+       
Sbjct  61   VRLYDAFEDK-DNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES------  113

Query  138  VHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDI  197
                                            +T +V T +Y APE+ L    Y  +VD+
Sbjct  114  -----------------------------GSSLTTFVGTPWYMAPEV-LGGNPYGPKVDV  143

Query  198  WSAGCIFAEMLEGKPLFPGKDHVNQFSIITELLGTPPDDVIQTICSENTLRFVKSLPKRE  257
            WS GCI  E+L GKP FPG +    + +I                              +
Sbjct  144  WSLGCILYELLTGKPPFPGINGNEIYELII----------------------------DQ  175

Query  258  RQPLANKFKNADPEAVDLLERMLVFDPKKRIRAGEALAHEYL  299
                     N   EA DLL+++L  DP KR+ A +AL H + 
Sbjct  176  PYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 114 bits (288),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 88/193 (46%), Gaps = 19/193 (10%)

Query  23   LQPVGMGAFGLVWSAR----DQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHEN  78
             + +G GAFG V+        + T   VAVK  +K  +     +    E  ++K L H N
Sbjct  4    GEKLGEGAFGEVYKGTLKGEGENTKIKVAVK-TLKEGADEEEREDFLEEASIMKKLDHPN  62

Query  79   IISLSDIFISPLEDIYFVTELL-GTDLH---RLLTSRPLEKQFIQYFLYQILRGLKYVHS  134
            I+ L  +  +  E +Y VTE + G DL    R    +   K  +     QI +G++Y+ S
Sbjct  63   IVKLLGV-CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQIAKGMEYLES  120

Query  135  AGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVST------RYYRAPEIMLTW  188
               VHRDL   N L++EN  +KI DFGL+R                  ++  APE +   
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLKDG  179

Query  189  QKYDVEVDIWSAG  201
             K+  + D+WS G
Sbjct  180  -KFTSKSDVWSFG  191



Lambda      K        H        a         alpha
   0.321    0.139    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00002200

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  163     2e-49
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            101     9e-26


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 163 bits (414),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 75/270 (28%), Positives = 111/270 (41%), Gaps = 67/270 (25%)

Query  3    GRTRSARDQLTGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHENIISLSDIFISPLE  62
            G    A+ + TG+ VA+KKI K        K   RE+K+LK L H NI+ L D F    +
Sbjct  13   GTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRLYDAFEDK-D  71

Query  63   DIYFVTELL-GTDLHRLLTSR-PLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILI  120
            ++Y V E + G  L  LL+ +    ++  ++ + QIL GL+                   
Sbjct  72   NLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES------------------  113

Query  121  NENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLE  180
                                +T +V T +Y APE+ L    Y  +VD+WS GCI  E+L 
Sbjct  114  -----------------GSSLTTFVGTPWYMAPEV-LGGNPYGPKVDVWSLGCILYELLT  155

Query  181  GKPLFPGKDHVNQFSIITELLGTPPDDVIQTICSENTLRFVKSLPKRERQPLANKFKNAD  240
            GKP FPG +    + +I                              +         N  
Sbjct  156  GKPPFPGINGNEIYELII----------------------------DQPYAFPELPSNLS  187

Query  241  PEAVDLLERMLVFDPKKRIRAGEALAHEYL  270
             EA DLL+++L  DP KR+ A +AL H + 
Sbjct  188  EEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 101 bits (255),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 52/170 (31%), Positives = 78/170 (46%), Gaps = 15/170 (9%)

Query  13   TGQPVAVKKIMKPFSTPVLSKRTYRELKLLKHLRHENIISLSDIFISPLEDIYFVTELL-  71
            T   VAVK  +K  +     +    E  ++K L H NI+ L  +  +  E +Y VTE + 
Sbjct  27   TKIKVAVK-TLKEGADEEEREDFLEEASIMKKLDHPNIVKLLGV-CTQGEPLYIVTEYMP  84

Query  72   GTDLH---RLLTSRPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKI  128
            G DL    R    +   K  +     QI +G++Y+ S   VHRDL   N L++EN  +KI
Sbjct  85   GGDLLDFLRKHKRKLTLKDLLS-MALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKI  143

Query  129  CDFGLARIQDPQMTGYVST------RYYRAPEIMLTWQKYDVEVDIWSAG  172
             DFGL+R                  ++  APE +    K+  + D+WS G
Sbjct  144  SDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLKDG-KFTSKSDVWSFG  191



Lambda      K        H        a         alpha
   0.321    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00007573

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  141     1e-41
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            91.8    3e-22


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 141 bits (359),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 97/240 (40%), Gaps = 67/240 (28%)

Query  11   KRTYRELKLLKHLRHENIISLSDIFISPLEDIYFVTELL-GTDLHRLLTSR-PLEKQFIQ  68
            K   RE+K+LK L H NI+ L D F    +++Y V E + G  L  LL+ +    ++  +
Sbjct  43   KNILREIKILKKLNHPNIVRLYDAFEDK-DNLYLVLEYVEGGSLFDLLSEKGAFSEREAK  101

Query  69   YFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYY  128
            + + QIL GL+                                       +T +V T +Y
Sbjct  102  FIMKQILEGLES-----------------------------------GSSLTTFVGTPWY  126

Query  129  RAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITELLGTPPDDVIQ  188
             APE+ L    Y  +VD+WS GCI  E+L GKP FPG +    + +I             
Sbjct  127  MAPEV-LGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII------------  173

Query  189  TICSENTLRFVKSLPKRERQPLANKFKNADPEAVDLLERMLVFDPKKRIRAGEALAHEYL  248
                             +         N   EA DLL+++L  DP KR+ A +AL H + 
Sbjct  174  ----------------DQPYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 91.8 bits (229),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 46/146 (32%), Positives = 69/146 (47%), Gaps = 14/146 (10%)

Query  15   RELKLLKHLRHENIISLSDIFISPLEDIYFVTELL-GTDLH---RLLTSRPLEKQFIQYF  70
             E  ++K L H NI+ L  +  +  E +Y VTE + G DL    R    +   K  +   
Sbjct  50   EEASIMKKLDHPNIVKLLGV-CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-M  107

Query  71   LYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVST-----  125
              QI +G++Y+ S   VHRDL   N L++EN  +KI DFGL+R                 
Sbjct  108  ALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLP  167

Query  126  -RYYRAPEIMLTWQKYDVEVDIWSAG  150
             ++  APE +    K+  + D+WS G
Sbjct  168  IKWM-APESLKDG-KFTSKSDVWSFG  191



Lambda      K        H        a         alpha
   0.321    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00007574

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  135     3e-39
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.2    1e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 135 bits (343),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 95/240 (40%), Gaps = 67/240 (28%)

Query  11   KRTYRELKLLKHLRHENVCGQSDIFISPLEDIYFVTELL-GTDLHRLLTSR-PLEKQFIQ  68
            K   RE+K+LK L H N+    D F    +++Y V E + G  L  LL+ +    ++  +
Sbjct  43   KNILREIKILKKLNHPNIVRLYDAFEDK-DNLYLVLEYVEGGSLFDLLSEKGAFSEREAK  101

Query  69   YFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYY  128
            + + QIL GL+                                       +T +V T +Y
Sbjct  102  FIMKQILEGLES-----------------------------------GSSLTTFVGTPWY  126

Query  129  RAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITELLGTPPDDVIQ  188
             APE+ L    Y  +VD+WS GCI  E+L GKP FPG +    + +I             
Sbjct  127  MAPEV-LGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII------------  173

Query  189  TICSENTLRFVKSLPKRERQPLANKFKNADPEAVDLLERMLVFDPKKRIRAGEALAHEYL  248
                             +         N   EA DLL+++L  DP KR+ A +AL H + 
Sbjct  174  ----------------DQPYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.2 bits (217),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 47/152 (31%), Positives = 67/152 (44%), Gaps = 26/152 (17%)

Query  15   RELKLLKHLRHEN------VCGQSDIFISPLEDIYFVTELL-GTDLH---RLLTSRPLEK  64
             E  ++K L H N      VC Q        E +Y VTE + G DL    R    +   K
Sbjct  50   EEASIMKKLDHPNIVKLLGVCTQG-------EPLYIVTEYMPGGDLLDFLRKHKRKLTLK  102

Query  65   QFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVS  124
              +     QI +G++Y+ S   VHRDL   N L++EN  +KI DFGL+R           
Sbjct  103  DLLS-MALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKR  161

Query  125  T------RYYRAPEIMLTWQKYDVEVDIWSAG  150
                   ++  APE +    K+  + D+WS G
Sbjct  162  GGGKLPIKWM-APESLKDG-KFTSKSDVWSFG  191



Lambda      K        H        a         alpha
   0.321    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00007575

Length=92
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  74.2    2e-18


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 74.2 bits (183),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 30/97 (31%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query  1    MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSII---  57
            +T +V T +Y APE+ L    Y  +VD+WS GCI  E+L GKP FPG +    + +I   
Sbjct  117  LTTFVGTPWYMAPEV-LGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQ  175

Query  58   TELLGTPPD-------DVIQTICSENVSGRPAFRLLL  87
                   P        D+++ +  ++ S R      L
Sbjct  176  PYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQAL  212



Lambda      K        H        a         alpha
   0.323    0.139    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00002201

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459983 pfam00888, Cullin, Cullin family                           635     0.0  


>CDD:459983 pfam00888, Cullin, Cullin family.  
Length=610

 Score = 635 bits (1641),  Expect = 0.0, Method: Composition-based stats.
 Identities = 240/507 (47%), Positives = 330/507 (65%), Gaps = 21/507 (4%)

Query  2    KVHEKVMEAVLNLIEKQRNGETIEQSQIKNIVDSFVSLGLDENDNTKSTLEVYRVYFEKP  61
             + +K+++A+L+LIEK+RNGE I++S IK+++D  VSLG DE  +      VY   FE P
Sbjct  121  PLKDKLIDALLDLIEKERNGEVIDRSLIKSVIDMLVSLGEDEKKDN-----VYEEDFEPP  175

Query  62   FIAATRVYYENESRQFVAENSVVEYMKKAEARLDEEKARVGLYLHPDIMKRLTDTCLDVL  121
            F+ AT  YY  ES++ +AEN   EY+KKAE RL+EE+ RV  YLH    K+L D   +VL
Sbjct  176  FLEATEEYYRAESQELLAENVAPEYLKKAERRLEEEEERVRHYLHSSTKKKLLDVLEEVL  235

Query  122  VTAHSE-LLRDEFQVLLDNERQDDLARMYRLLSRIKDGLDPLRAKFETHVRKAGLAAVEK  180
            ++ H E LL +E Q LLD+ + +DL R+YRLLSR+ DGL+PLR  FE +++K G  A+ K
Sbjct  236  ISDHLEELLEEELQNLLDDNKTEDLKRLYRLLSRVPDGLEPLRKAFEEYIKKEG-KAIVK  294

Query  181  VAAEGEAFEPKMYVDALLQVHTRYQNLVNEAFNGESEFVRSLDNACREFVNRNKVCKSSS  240
             A E    + K YV+ LL++  ++  +V +AF+ +  FV++LD A  EF+N+N     S+
Sbjct  295  DAKEQTT-DAKKYVEDLLELKDKFDKIVKDAFSNDELFVKALDEAFEEFINKNT----SN  349

Query  241  TKSPELLARYTDSLLKKGSKAAEESELEEMLVQIMTVFKYIEDKDVFQKFYSKMLAKRLV  300
            +KSPELLA+Y D LLKKG K   E ELEE L +++T+F+YI+DKDVF+ FY K LAKRL+
Sbjct  350  SKSPELLAKYIDDLLKKGLKGKSEEELEEKLDKVITLFRYIQDKDVFEAFYKKHLAKRLL  409

Query  301  HVSSVSDDAETSMISKLKEACGFEYTNKLQRMFQDIQISKDLNSNYKDWQEKVLDEDDRK  360
               S SDDAE SMISKLKE CG E+T+KL+ MF+D+++SKDL   +K+   +       K
Sbjct  410  LGKSASDDAERSMISKLKEECGSEFTSKLEGMFKDMELSKDLMKEFKEHLSEN---KSSK  466

Query  361  KQVDAHFQILGTGFWPLNPPTTGFSAPPEIVKTYERFQSFYYDKHNGRKLTWLWQLCKGE  420
            K +D    +L +G WP    +  F  PPE+ K  ERF+ FY  KH+GRKLTWL  L   E
Sbjct  467  KGIDLSVNVLTSGAWPTYLTSD-FILPPELEKAIERFEKFYLSKHSGRKLTWLHSLGTAE  525

Query  421  VKANYIKNTKVPYTFQVSTFQMGILLLFNEN-DTLTYSDIQKATSLAPEILDPNLAILL-  478
            +KA + K  K  +   VST+QM ILLLFN++ D+L+Y +IQ+AT L  E L   L  L  
Sbjct  526  LKATFPKGKK--HELNVSTYQMAILLLFNDDGDSLSYEEIQEATGLPDEELKRTLQSLAC  583

Query  479  -KAKVLLPSPEGAKPEPGTSFSLNYNF  504
             KAKVLL  P      P  +FS N +F
Sbjct  584  AKAKVLLKEPMSKDINPTDTFSFNEDF  610



Lambda      K        H        a         alpha
   0.316    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 706864444


Query= TCONS_00002202

Length=743
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430832 pfam09794, Avl9, Transport protein Avl9. Avl9 is a pro...  447     6e-153


>CDD:430832 pfam09794, Avl9, Transport protein Avl9.  Avl9 is a protein involved 
in exocytic transport from the Golgi. It has been speculated 
that Avl9 could play a role in deforming membranes 
for vesicle fission and/or in recruiting cargo.
Length=379

 Score = 447 bits (1153),  Expect = 6e-153, Method: Composition-based stats.
 Identities = 178/342 (52%), Positives = 230/342 (67%), Gaps = 43/342 (13%)

Query  43   STEEFSYFTLRKKETEKAPATSLFGIACSRQLDSNLLINRPADVTRSTVQKAVVVITDTP  102
              E+FSYFTL   E    P T+LFGI+CSRQ+ S+ L+ RPADVTRSTVQKAVVVI+  P
Sbjct  49   FEEDFSYFTLLYDEPNTGPLTTLFGISCSRQIKSSELLKRPADVTRSTVQKAVVVISRLP  108

Query  103  QSVGQLREKLSVVTSAWFAQRYVENIHVCVKDFSDIDILK----------VGLILA----  148
               GQ+++KLS+VT+A+F Q           DFSD  IL             L       
Sbjct  109  -IFGQIKDKLSIVTNAYFEQG----------DFSDTSILVSLYENLNSTFKSLGGEELRE  157

Query  149  ----LCLSLREMIHEFKYQTLVLFKALLLQPKMLFFGSRCERLCMIQFSLISLIPGLINS  204
                + LSLRE++ +F++ TLVLFKALLL+ K+LF+GS  ERLC +QFSLISLIP LI++
Sbjct  158  SDLYVGLSLRELVLKFRHNTLVLFKALLLEKKVLFYGSPVERLCNLQFSLISLIPNLISN  217

Query  205  LQDCADPAADSYAQTVGKPTSLKTSDRTSCI--------------MFGPYTPLQQLDLLA  250
            LQD   P+ DSY   + KPTSLKTSDR S +              +F PYTPLQQLDLL+
Sbjct  218  LQDSGSPSLDSYESDLTKPTSLKTSDRRSLLRFLGLPLQIFGKGGLFSPYTPLQQLDLLS  277

Query  251  DHGTKSYVVGSTNSLLLQQKDRYSDILINLDEDVITISSPSLRSALVLSTADRRWIDLLT  310
            D  TKS++VG++NSL LQQKD  +DIL+NLD   I I  PSL+ AL LS+AD+RWID L 
Sbjct  278  DPTTKSFLVGTSNSLFLQQKDLLADILVNLDNATIEILDPSLKRALQLSSADKRWIDSLV  337

Query  311  QIINDTWDESHPQRPKDHGYMGSEEFIRLQFEEYLLALLSSM  352
            Q + +TWD++ P+ PK+ G+ GS+++IR QFE+YL+ LLSS+
Sbjct  338  QHVEETWDDADPETPKNSGFEGSDDWIRWQFEDYLVGLLSSV  379



Lambda      K        H        a         alpha
   0.313    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 944393648


Query= TCONS_00007576

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00002203

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00007577

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00002204

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00007578

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00007579

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00007580

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00002205

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00002206

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00002207

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00002208

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00002209

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00007581

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00002210

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00002211

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00002212

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431110 pfam10173, Mit_KHE1, Mitochondrial K+-H+ exchange-rela...  255     9e-87


>CDD:431110 pfam10173, Mit_KHE1, Mitochondrial K+-H+ exchange-related.  The 
members of this family function as mitochondrial potassium-hydrogen 
exchange transporters. The family is part of a large 
mitochondrial KHE protein complex.
Length=191

 Score = 255 bits (654),  Expect = 9e-87, Method: Composition-based stats.
 Identities = 94/198 (47%), Positives = 129/198 (65%), Gaps = 24/198 (12%)

Query  3    LFVVPISTQRALIYSRPLSR--------DIVRELSVLDRVTNKAAETWAKWEEADKGWKK  54
            L ++PI+T+R+LIY +                ++S+ D+VTNKAA+TWAK E++ KGWKK
Sbjct  1    LILLPITTRRSLIYCKHTEELLPKSSAAAAAAKVSLEDKVTNKAAKTWAKLEKSPKGWKK  60

Query  55   HLVTWGNKVQQRIPFEEWGLKSIPSLKAQRRLDKS---------SETKKVDVLFPGNAIK  105
             +V++GN++  RIP+EEW LKSIP L A RR  +           + K ++V +P + I 
Sbjct  61   KIVSYGNRLLDRIPYEEWALKSIPPLSAPRRELQGKQAKKKIDKEDLKPIEVYYPSSLIS  120

Query  106  AEKIRSILRKIATERQDLHRKKMWWSLVAAPLTAPIALIPVYSLCLTDVPNIPFFYLAYR  165
              ++   LRK+ATERQ LHRK++ W L+  PLT P ALIPV       +PNIPFFYL YR
Sbjct  121  PRRVLRQLRKLATERQPLHRKRLIWCLLGMPLTLPFALIPV-------IPNIPFFYLVYR  173

Query  166  GWSHWRALNGSKHLEYLV  183
             +SHWRAL GSKHLE+L+
Sbjct  174  AYSHWRALKGSKHLEFLL  191



Lambda      K        H        a         alpha
   0.318    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00002214

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.141    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00007582

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.141    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00002216

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily. This...  130     2e-37


>CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=246

 Score = 130 bits (330),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 89/267 (33%), Gaps = 57/267 (21%)

Query  1    MQLSFLRRTVVGPAVLSVQDIKIGARISTIHVTLSQRPDRPRTADGKDDLEVKVVGYITV  60
            + + FLR    GP  + V+ ++ G   ST  V LSQ        DG+    V V    T 
Sbjct  36   LHVDFLRPVPPGPVTIRVEVVRDGRSFSTRRVELSQ--------DGR----VVVTATATF  83

Query  61   SPPDMEEGPIRKGTWGLSPPPVSGSLANGSVNLEALAATGKDGAWMRLPRPPPGLTAPQN  120
                  E  +       +PPP+                             P     P  
Sbjct  84   GRLRSSEWELT----PAAPPPL--------------PPPEDCPLAADEAPFPLFRRVPGF  125

Query  121  LEIYAPRP-QGPMTLESRQKQVVDQWTRFKPGGNTVARWSNEAVMFLADMFPAALDRMGA  179
            L+ + PR  +G           V  W R + GG         A+ +LAD FP  +  +  
Sbjct  126  LDPFEPRFARGGGPFSPGGPGRVRLWVRLRDGG---EPDPLAALAYLADAFPPRVLSLRL  182

Query  180  METSRLLAMEGVQEGELQGNAHDKGAFWYPTVTLNIDLRTRIPPEGVEWLQSRVVTRMLR  239
                                     + W+PT+ L +    R PP G EWL  R  T +  
Sbjct  183  D---------------------PPASGWFPTLDLTVYFH-RRPPPG-EWLLLRAETPVAG  219

Query  240  GSRADLDIVILDPQGELIALSTQVALV  266
              R D++  + D  G L+A S Q  LV
Sbjct  220  DGRGDVEARLWDEDGRLVATSRQEVLV  246



Lambda      K        H        a         alpha
   0.316    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00002215

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily. This...  156     2e-46


>CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=246

 Score = 156 bits (396),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 77/312 (25%), Positives = 108/312 (35%), Gaps = 68/312 (22%)

Query  28   LDPQWCILSVPHGGYTTSVLYRLATVYFRETKRNRFRSTPEPIG-MQLSFLRRTVVGPAV  86
              P W     PHGGY  ++L R A               P+P+  + + FLR    GP  
Sbjct  1    TPPPWSPGRAPHGGYVAALLLRAAERTVP----------PDPLHSLHVDFLRPVPPGPVT  50

Query  87   LSVQDIKIGARISTIHVTLSQRPDRPRTADGKDDLEVKVVGYITVSPPDMEEGPIRKGTW  146
            + V+ ++ G   ST  V LSQ        DG+    V V    T       E  +     
Sbjct  51   IRVEVVRDGRSFSTRRVELSQ--------DGR----VVVTATATFGRLRSSEWELT----  94

Query  147  GLSPPPVSGSLANGSVNLEALAATGKDGAWMRLPRPPPGLTAPQNLEIYAPRP-QGPMTL  205
              +PPP+             LAA        R          P  L+ + PR  +G    
Sbjct  95   PAAPPPL------PPPEDCPLAADEAPFPLFR--------RVPGFLDPFEPRFARGGGPF  140

Query  206  ESRQKQVVDQWTRFKPGGNTVARWSNEAVMFLADMFPAALDRMGAMETSRLLAMEGVQEG  265
                   V  W R + GG         A+ +LAD FP  +  +                 
Sbjct  141  SPGGPGRVRLWVRLRDGG---EPDPLAALAYLADAFPPRVLSLRLD--------------  183

Query  266  ELQGNAHDKGAFWYPTVTLNIDLRTRIPPEGVEWLQSRVVTRMLRGSRADLDIVILDPQG  325
                      + W+PT+ L +    R PP G EWL  R  T +    R D++  + D  G
Sbjct  184  -------PPASGWFPTLDLTVYFH-RRPPPG-EWLLLRAETPVAGDGRGDVEARLWDEDG  234

Query  326  ELIALSTQVALV  337
             L+A S Q  LV
Sbjct  235  RLVATSRQEVLV  246



Lambda      K        H        a         alpha
   0.317    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00007583

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily. This...  128     1e-36


>CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=246

 Score = 128 bits (323),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 64/267 (24%), Positives = 89/267 (33%), Gaps = 57/267 (21%)

Query  1    MQLSFLRRTVVGPAVLSVQDIKIGARISTIHVTLSQRPDRPRTADGKDDLEVKVVGYITV  60
            + + FLR    GP  + V+ ++ G   ST  V LSQ        DG+    V V    T 
Sbjct  36   LHVDFLRPVPPGPVTIRVEVVRDGRSFSTRRVELSQ--------DGR----VVVTATATF  83

Query  61   SPPDMEEGPIRKGTWGLSPPPVSGSLANGSVNLEALAATGKDGAWMRLPRPPPGLTAPQN  120
                  E  +        PPP    LA                        P     P  
Sbjct  84   GRLRSSEWELTPAAPPPLPPPEDCPLA------------------ADEAPFPLFRRVPGF  125

Query  121  LEIYAPRP-QGPMTLESRQKQVVDQWTRFKPGGNTVARWSNEAVMFLADMFPAALDRMGA  179
            L+ + PR  +G           V  W R + GG         A+ +LAD FP  +  +  
Sbjct  126  LDPFEPRFARGGGPFSPGGPGRVRLWVRLRDGG---EPDPLAALAYLADAFPPRVLSLRL  182

Query  180  METSRLLAMEGVQEGELQGNAHDKGAFWYPTVTLNIDLRTRIPPEGVEWLQSRVVTRMLR  239
                                     + W+PT+ L +    R PP G EWL  R  T +  
Sbjct  183  D---------------------PPASGWFPTLDLTVYFH-RRPPPG-EWLLLRAETPVAG  219

Query  240  GSRADLDIVILDPQGELIALSTQVALV  266
              R D++  + D  G L+A S Q  LV
Sbjct  220  DGRGDVEARLWDEDGRLVATSRQEVLV  246



Lambda      K        H        a         alpha
   0.317    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00002218

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily. This...  156     3e-46


>CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=246

 Score = 156 bits (397),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 77/312 (25%), Positives = 108/312 (35%), Gaps = 68/312 (22%)

Query  45   LDPQWCILSVPHGGYTTSVLYRLATVYFRETKRNRFRSTPEPIG-MQLSFLRRTVVGPAV  103
              P W     PHGGY  ++L R A               P+P+  + + FLR    GP  
Sbjct  1    TPPPWSPGRAPHGGYVAALLLRAAERTVP----------PDPLHSLHVDFLRPVPPGPVT  50

Query  104  LSVQDIKIGARISTIHVTLSQRPDRPRTADGKDDLEVKVVGYITVSPPDMEEGPIRKGTW  163
            + V+ ++ G   ST  V LSQ        DG+    V V    T       E  +     
Sbjct  51   IRVEVVRDGRSFSTRRVELSQ--------DGR----VVVTATATFGRLRSSEWELT----  94

Query  164  GLSPPPVSGSLANGSVNLEALAATGKDGAWMRLPRPPPGLTAPQNLEIYAPRP-QGPMTL  222
              +PPP+             LAA        R          P  L+ + PR  +G    
Sbjct  95   PAAPPPL------PPPEDCPLAADEAPFPLFR--------RVPGFLDPFEPRFARGGGPF  140

Query  223  ESRQKQVVDQWTRFKPGGNTVARWSNEAVMFLADMFPAALDRMGAMETSRLLAMEGVQEG  282
                   V  W R + GG         A+ +LAD FP  +  +                 
Sbjct  141  SPGGPGRVRLWVRLRDGG---EPDPLAALAYLADAFPPRVLSLRLD--------------  183

Query  283  ELQGNAHDKGAFWYPTVTLNIDLRTRIPPEGVEWLQSRVVTRMLRGSRADLDIVILDPQG  342
                      + W+PT+ L +    R PP G EWL  R  T +    R D++  + D  G
Sbjct  184  -------PPASGWFPTLDLTVYFH-RRPPPG-EWLLLRAETPVAGDGRGDVEARLWDEDG  234

Query  343  ELIALSTQVALV  354
             L+A S Q  LV
Sbjct  235  RLVATSRQEVLV  246



Lambda      K        H        a         alpha
   0.318    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00002217

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily. This...  130     2e-37


>CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=246

 Score = 130 bits (330),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 89/267 (33%), Gaps = 57/267 (21%)

Query  1    MQLSFLRRTVVGPAVLSVQDIKIGARISTIHVTLSQRPDRPRTADGKDDLEVKVVGYITV  60
            + + FLR    GP  + V+ ++ G   ST  V LSQ        DG+    V V    T 
Sbjct  36   LHVDFLRPVPPGPVTIRVEVVRDGRSFSTRRVELSQ--------DGR----VVVTATATF  83

Query  61   SPPDMEEGPIRKGTWGLSPPPVSGSLANGSVNLEALAATGKDGAWMRLPRPPPGLTAPQN  120
                  E  +       +PPP+                             P     P  
Sbjct  84   GRLRSSEWELT----PAAPPPL--------------PPPEDCPLAADEAPFPLFRRVPGF  125

Query  121  LEIYAPRP-QGPMTLESRQKQVVDQWTRFKPGGNTVARWSNEAVMFLADMFPAALDRMGA  179
            L+ + PR  +G           V  W R + GG         A+ +LAD FP  +  +  
Sbjct  126  LDPFEPRFARGGGPFSPGGPGRVRLWVRLRDGG---EPDPLAALAYLADAFPPRVLSLRL  182

Query  180  METSRLLAMEGVQEGELQGNAHDKGAFWYPTVTLNIDLRTRIPPEGVEWLQSRVVTRMLR  239
                                     + W+PT+ L +    R PP G EWL  R  T +  
Sbjct  183  D---------------------PPASGWFPTLDLTVYFH-RRPPPG-EWLLLRAETPVAG  219

Query  240  GSRADLDIVILDPQGELIALSTQVALV  266
              R D++  + D  G L+A S Q  LV
Sbjct  220  DGRGDVEARLWDEDGRLVATSRQEVLV  246



Lambda      K        H        a         alpha
   0.316    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00007584

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  143     4e-41


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 143 bits (363),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 56/134 (42%), Positives = 80/134 (60%), Gaps = 10/134 (7%)

Query  204  YQLEGLEWLKSLWMNGLC-GILADEMGLGKTVQAISLIAFFKE--KNVSGPFLIAAPLST  260
            YQ+EG+ W+ SL  N    GILADEMGLGKT+Q ISL+ + K   KN  GP LI  PLS 
Sbjct  1    YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGPTLIVVPLSL  60

Query  261  VSNWVDEFAKWT--PSIKTVLYHGSKDERATIRRNLMKLKDQRSADFPVVCTSYEICMND  318
            + NW++EF +W   P+++ V+ HG+K  +   + +   L     ADF VV T+YE     
Sbjct  61   LHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFL-----ADFDVVITTYETLRKH  115

Query  319  RKFLAQYQWRYIIV  332
            ++ L +  W  I++
Sbjct  116  KELLKKVHWHRIVL  129



Lambda      K        H        a         alpha
   0.312    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00002219

Length=867
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  294     1e-93
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  112     6e-30


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 294 bits (754),  Expect = 1e-93, Method: Composition-based stats.
 Identities = 123/267 (46%), Positives = 164/267 (61%), Gaps = 22/267 (8%)

Query  204  YQLEGLEWLKSLWMNGLC-GILADEMGLGKTVQAISLIAFFKE--KNVSGPFLIAAPLST  260
            YQ+EG+ W+ SL  N    GILADEMGLGKT+Q ISL+ + K   KN  GP LI  PLS 
Sbjct  1    YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGPTLIVVPLSL  60

Query  261  VSNWVDEFAKWT--PSIKTVLYHGSKDERATIRRNLMKLKDQRSADFPVVCTSYEICMND  318
            + NW++EF +W   P+++ V+ HG+K  +   + +   L     ADF VV T+YE     
Sbjct  61   LHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFL-----ADFDVVITTYETLRKH  115

Query  319  RKFLAQYQWRYIIVDEGHRLKNMNCKLIKELLSYNSANRLLITGTPLQNNITELWSLLHF  378
            ++ L +  W  I++DEGHRLKN   KL K L S  + NR ++TGTPLQNN+ ELW+LL+F
Sbjct  116  KELLKKVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQNNLEELWALLNF  175

Query  379  LLPEIFNDLNSFQSWFDFSSMLDSSGQTDVIERRKRT-LVSTMHSILKPFLLRRVKSDVE  437
            L P  F  L++F++WFD             IER      VS +H +LKPFLLRR K DVE
Sbjct  176  LRPGPFGSLSTFRNWFDRP-----------IERGGGKKGVSRLHKLLKPFLLRRTKKDVE  224

Query  438  TALPKKREYILYAPLTAEQKDLYREIL  464
             +LP K EYIL+  L+  Q+ LY+  L
Sbjct  225  KSLPPKVEYILFCRLSKLQRKLYQTFL  251


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 112 bits (282),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 57/115 (50%), Gaps = 6/115 (5%)

Query  625  GKMLLLDRLVPCLLKKGHKILIFSQFKTQLDILQDWATQLRGWNCCRIDGAISQTDRQAQ  684
             K+  L  L+    ++G K+LIFSQ K  L+   +   +  G    R+ G +SQ +R+  
Sbjct  1    EKLEALLELLKK--ERGGKVLIFSQTKKTLEA--ELLLEKEGIKVARLHGDLSQEEREEI  56

Query  685  IKAFNSDPGYKIFLLSTRAGGQGINLVAADTVILYDSDWNPQQDLQAQDRAHRIG  739
            ++ F    G    L++T    +G++L   D VI YD  WNP   +Q   RA R G
Sbjct  57   LEDFRK--GKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.314    0.129    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1108216808


Query= TCONS_00002220

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  134     3e-36
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  111     8e-30


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 134 bits (340),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 57/123 (46%), Positives = 74/123 (60%), Gaps = 10/123 (8%)

Query  2    NCKLIKELLSYNSANRLLITGTPLQNNITELWSLLHFLLPEIFNDLNSFQSWFDFSSMLD  61
              KL K L S  + NR ++TGTPLQNN+ ELW+LL+FL P  F  L++F++WFD      
Sbjct  139  KSKLSKALKSLKTRNRWILTGTPLQNNLEELWALLNFLRPGPFGSLSTFRNWFDRPIE--  196

Query  62   SSGQTDVIERRKRTLVSTMHSILKPFLLRRVKSDVETALPKKREYILYAPLTAEQKDLYR  121
              G            VS +H +LKPFLLRR K DVE +LP K EYIL+  L+  Q+ LY+
Sbjct  197  RGGGKK--------GVSRLHKLLKPFLLRRTKKDVEKSLPPKVEYILFCRLSKLQRKLYQ  248

Query  122  EIL  124
              L
Sbjct  249  TFL  251


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 111 bits (279),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 57/115 (50%), Gaps = 6/115 (5%)

Query  285  GKMLLLDRLVPCLLKKGHKILIFSQFKTQLDILQDWATQLRGWNCCRIDGAISQTDRQAQ  344
             K+  L  L+    ++G K+LIFSQ K  L+   +   +  G    R+ G +SQ +R+  
Sbjct  1    EKLEALLELLKK--ERGGKVLIFSQTKKTLEA--ELLLEKEGIKVARLHGDLSQEEREEI  56

Query  345  IKAFNSDPGYKIFLLSTRAGGQGINLVAADTVILYDSDWNPQQDLQAQDRAHRIG  399
            ++ F    G    L++T    +G++L   D VI YD  WNP   +Q   RA R G
Sbjct  57   LEDFRK--GKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.315    0.130    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00002221

Length=867
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  294     1e-93
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  112     6e-30


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 294 bits (754),  Expect = 1e-93, Method: Composition-based stats.
 Identities = 123/267 (46%), Positives = 164/267 (61%), Gaps = 22/267 (8%)

Query  204  YQLEGLEWLKSLWMNGLC-GILADEMGLGKTVQAISLIAFFKE--KNVSGPFLIAAPLST  260
            YQ+EG+ W+ SL  N    GILADEMGLGKT+Q ISL+ + K   KN  GP LI  PLS 
Sbjct  1    YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGPTLIVVPLSL  60

Query  261  VSNWVDEFAKWT--PSIKTVLYHGSKDERATIRRNLMKLKDQRSADFPVVCTSYEICMND  318
            + NW++EF +W   P+++ V+ HG+K  +   + +   L     ADF VV T+YE     
Sbjct  61   LHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFL-----ADFDVVITTYETLRKH  115

Query  319  RKFLAQYQWRYIIVDEGHRLKNMNCKLIKELLSYNSANRLLITGTPLQNNITELWSLLHF  378
            ++ L +  W  I++DEGHRLKN   KL K L S  + NR ++TGTPLQNN+ ELW+LL+F
Sbjct  116  KELLKKVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQNNLEELWALLNF  175

Query  379  LLPEIFNDLNSFQSWFDFSSMLDSSGQTDVIERRKRT-LVSTMHSILKPFLLRRVKSDVE  437
            L P  F  L++F++WFD             IER      VS +H +LKPFLLRR K DVE
Sbjct  176  LRPGPFGSLSTFRNWFDRP-----------IERGGGKKGVSRLHKLLKPFLLRRTKKDVE  224

Query  438  TALPKKREYILYAPLTAEQKDLYREIL  464
             +LP K EYIL+  L+  Q+ LY+  L
Sbjct  225  KSLPPKVEYILFCRLSKLQRKLYQTFL  251


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 112 bits (282),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 57/115 (50%), Gaps = 6/115 (5%)

Query  625  GKMLLLDRLVPCLLKKGHKILIFSQFKTQLDILQDWATQLRGWNCCRIDGAISQTDRQAQ  684
             K+  L  L+    ++G K+LIFSQ K  L+   +   +  G    R+ G +SQ +R+  
Sbjct  1    EKLEALLELLKK--ERGGKVLIFSQTKKTLEA--ELLLEKEGIKVARLHGDLSQEEREEI  56

Query  685  IKAFNSDPGYKIFLLSTRAGGQGINLVAADTVILYDSDWNPQQDLQAQDRAHRIG  739
            ++ F    G    L++T    +G++L   D VI YD  WNP   +Q   RA R G
Sbjct  57   LEDFRK--GKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.314    0.129    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0767    0.140     1.90     42.6     43.6 

Effective search space used: 1108216808


Query= TCONS_00007585

Length=914
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463780 pfam13087, AAA_12, AAA domain. This family of domains ...  257     1e-80
CDD:404072 pfam13086, AAA_11, AAA domain. This family of domains ...  197     6e-58
CDD:407973 pfam18141, DUF5599, Domain of unknown function (DUF559...  167     2e-49
CDD:401391 pfam09416, UPF1_Zn_bind, RNA helicase (UPF2 interactin...  114     4e-30


>CDD:463780 pfam13087, AAA_12, AAA domain.  This family of domains contain 
a P-loop motif that is characteristic of the AAA superfamily. 
Many of the proteins in this family are conjugative transfer 
proteins.
Length=196

 Score = 257 bits (658),  Expect = 1e-80, Method: Composition-based stats.
 Identities = 104/201 (52%), Positives = 130/201 (65%), Gaps = 8/201 (4%)

Query  470  LNQSLFERLVILG-CSPIRLNVQYRMHPCLSEFPSNMFYEGSLQNGVSAFDRLRRDVDFP  528
            L++SLFERL  LG  + + L+ QYRMHP + EFPS +FY G L++G S  +R   D DF 
Sbjct  1    LDRSLFERLQELGPSAVVMLDTQYRMHPEIMEFPSKLFYGGKLKDGPSVAERPLPD-DFH  59

Query  529  WPVVDSPMMFWS-NLGNEEISASGTSYLNRTEATNVEKIVTRFFKAGV-QPADIGIITPY  586
             P    P++F   +   EE S  GTSY N  EA  V ++V +  K+G  +P+DIG+ITPY
Sbjct  60   LPDPLGPLVFIDVDGSEEEESDGGTSYSNEAEAELVVQLVEKLIKSGPEEPSDIGVITPY  119

Query  587  EGQRSYIVSSMQANGTFKKEHYKEIEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDP  646
              Q   I   ++     K E    IEV +VD FQGREKD II SCVRSN+  GIGFLSDP
Sbjct  120  RAQVRLIRKLLKRKLGGKLE----IEVNTVDGFQGREKDVIIFSCVRSNEKGGIGFLSDP  175

Query  647  RRLNVALTRAKYGLVILGNPK  667
            RRLNVALTRAK GL+I+GN K
Sbjct  176  RRLNVALTRAKRGLIIVGNAK  196


>CDD:404072 pfam13086, AAA_11, AAA domain.  This family of domains contain 
a P-loop motif that is characteristic of the AAA superfamily. 
Many of the proteins in this family are conjugative transfer 
proteins.
Length=248

 Score = 197 bits (502),  Expect = 6e-58, Method: Composition-based stats.
 Identities = 87/250 (35%), Positives = 122/250 (49%), Gaps = 52/250 (21%)

Query  264  SQINAVKSVLQRP-MSLIQGPPGTGKTVTSATIIYHLAKIN------GGQVLVCAPSNVA  316
            SQ  A++S L     +LIQGPPGTGKT T   +I  L          G ++LVCAPSN A
Sbjct  1    SQREAIRSALSSSHFTLIQGPPGTGKTTTIVELIRQLLSYPATSAAAGPRILVCAPSNAA  60

Query  317  VDQLCERIHRTG----LKTVRVTAKSREDVESPVGFLSLHEQV--RLNDS----------  360
            VD + ER+ R G     K VR+   +   +   V  +SL   V  +LN+           
Sbjct  61   VDNILERLLRKGQKYGPKIVRIGHPAA--ISEAVLPVSLDYLVESKLNNEEDAQIVKDIS  118

Query  361  --------------------------NIELIKLNQLKAELGELSSQDEKRLKQLTRSAER  394
                                      N +  KL Q + +L     +  K L++  +S ER
Sbjct  119  KELEKLAKALRAFEKEIIVEKLLKSRNKDKSKLEQERRKLRSERKELRKELRRREQSLER  178

Query  395  EILNNADVICCTCVGAGDPRLAKL-KFRTVLIDESTQSAEPECMIPLVLGCKQVVLVGDH  453
            EIL+ A ++C T  GAG   L+ L  F  V+IDE+ Q+ EP  +IPL+ G K+VVLVGD 
Sbjct  179  EILDEAQIVCSTLSGAGSRLLSSLANFDVVIIDEAAQALEPSTLIPLLRGPKKVVLVGDP  238

Query  454  QQLGPVIMNK  463
            +QL P +++K
Sbjct  239  KQLPPTVISK  248


>CDD:407973 pfam18141, DUF5599, Domain of unknown function (DUF5599).  This 
domain is found in UPF 1 present in Homo sapiens. UPF 1 is 
involved in the initiation of nonsense-medicated decay, the 
process of degradation of transcripts containing premature 
termination codons in order to control the quality of mRNA. 
The domain is referred to as 1B.
Length=93

 Score = 167 bits (425),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 57/95 (60%), Positives = 75/95 (79%), Gaps = 2/95 (2%)

Query  110  QSQDGLIVRWDLGLNNKHLASFILPKLELGDVKLAVGDEMRLKYTGELRPKWEGVGYVIK  169
            Q+QD + VRWD+GLN KHLA F LPKL+ G++KLAVGDE+RL+YTG L   WEGVG+V+K
Sbjct  1    QTQDDISVRWDVGLNKKHLAWFSLPKLDSGEMKLAVGDELRLRYTGSLAEPWEGVGHVVK  60

Query  170  IPNNQSDEVTIELRAKGDHKSVPTECTHNFTADYV  204
            IP+N S+EVT+ELR+     + PT+ TH FT ++V
Sbjct  61   IPDNSSEEVTLELRSSS--NNPPTDLTHGFTVEFV  93


>CDD:401391 pfam09416, UPF1_Zn_bind, RNA helicase (UPF2 interacting domain). 
 UPF1 is an essential RNA helicase that detects mRNAs containing 
premature stop codons and triggers their degradation. 
This domain contains 3 zinc binding motifs and forms interactions 
with another protein (UPF2) that is also involved nonsense-mediated 
mRNA decay (NMD).
Length=152

 Score = 114 bits (288),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 40/57 (70%), Positives = 47/57 (82%), Gaps = 0/57 (0%)

Query  1    MPSSKDMNWDTSRWQPLIEDRSFLPWLVAAPSDQEQLRARHLSPQLIAKLEEMWKEN  57
              S KDMNWDTS+WQPLIEDR FLPWLV  PS++EQLRAR ++P  I KLEE+WK+N
Sbjct  96   AKSLKDMNWDTSQWQPLIEDRQFLPWLVKVPSEEEQLRARQITPAQINKLEELWKDN  152



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1175685966


Query= TCONS_00002222

Length=532


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00007586

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalyt...  58.0    3e-11


>CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain. 
 Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary 
fold is highly similar to that of tyrosine-specific phosphatases, 
except for a "recognition" region.
Length=127

 Score = 58.0 bits (141),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 46/146 (32%), Positives = 64/146 (44%), Gaps = 24/146 (16%)

Query  102  LYLGPVSCLKDKAWLAQEGFTLLLAIRNKRSAQARLVSGEKVGAELGIEADAVDVMDNQE  161
            LYLG      D A+L++ G T ++   N        V+ E      GI    + V DN E
Sbjct  1    LYLGSKPTASD-AFLSKLGITAVI---N--------VTREVDLYNSGILYLRIPVEDNHE  48

Query  162  -LISA-FPYAIRRINDHLVSCGPAVHSNAPKKIFVFCESGNERSATVVIAYLMVMLNLNM  219
              IS     A+  I+D               K+ V C++G  RSAT++IAYLM   NL++
Sbjct  49   TNISKYLEEAVEFIDD--------ARQKG-GKVLVHCQAGISRSATLIIAYLMKTRNLSL  99

Query  220  AVASHLVQLRRFCICVEEPL-RELLA  244
              A   V+ RR  I       R+LL 
Sbjct  100  NEAYSFVKERRPGISPNFGFKRQLLE  125



Lambda      K        H        a         alpha
   0.321    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00007587

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalyt...  58.0    3e-11


>CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain. 
 Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary 
fold is highly similar to that of tyrosine-specific phosphatases, 
except for a "recognition" region.
Length=127

 Score = 58.0 bits (141),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 46/146 (32%), Positives = 64/146 (44%), Gaps = 24/146 (16%)

Query  102  LYLGPVSCLKDKAWLAQEGFTLLLAIRNKRSAQARLVSGEKVGAELGIEADAVDVMDNQE  161
            LYLG      D A+L++ G T ++   N        V+ E      GI    + V DN E
Sbjct  1    LYLGSKPTASD-AFLSKLGITAVI---N--------VTREVDLYNSGILYLRIPVEDNHE  48

Query  162  -LISA-FPYAIRRINDHLVSCGPAVHSNAPKKIFVFCESGNERSATVVIAYLMVMLNLNM  219
              IS     A+  I+D               K+ V C++G  RSAT++IAYLM   NL++
Sbjct  49   TNISKYLEEAVEFIDD--------ARQKG-GKVLVHCQAGISRSATLIIAYLMKTRNLSL  99

Query  220  AVASHLVQLRRFCICVEEPL-RELLA  244
              A   V+ RR  I       R+LL 
Sbjct  100  NEAYSFVKERRPGISPNFGFKRQLLE  125



Lambda      K        H        a         alpha
   0.321    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00007588

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalyt...  58.0    3e-11


>CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain. 
 Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary 
fold is highly similar to that of tyrosine-specific phosphatases, 
except for a "recognition" region.
Length=127

 Score = 58.0 bits (141),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 46/146 (32%), Positives = 64/146 (44%), Gaps = 24/146 (16%)

Query  102  LYLGPVSCLKDKAWLAQEGFTLLLAIRNKRSAQARLVSGEKVGAELGIEADAVDVMDNQE  161
            LYLG      D A+L++ G T ++   N        V+ E      GI    + V DN E
Sbjct  1    LYLGSKPTASD-AFLSKLGITAVI---N--------VTREVDLYNSGILYLRIPVEDNHE  48

Query  162  -LISA-FPYAIRRINDHLVSCGPAVHSNAPKKIFVFCESGNERSATVVIAYLMVMLNLNM  219
              IS     A+  I+D               K+ V C++G  RSAT++IAYLM   NL++
Sbjct  49   TNISKYLEEAVEFIDD--------ARQKG-GKVLVHCQAGISRSATLIIAYLMKTRNLSL  99

Query  220  AVASHLVQLRRFCICVEEPL-RELLA  244
              A   V+ RR  I       R+LL 
Sbjct  100  NEAYSFVKERRPGISPNFGFKRQLLE  125



Lambda      K        H        a         alpha
   0.321    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00002224

Length=914
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463780 pfam13087, AAA_12, AAA domain. This family of domains ...  257     1e-80
CDD:404072 pfam13086, AAA_11, AAA domain. This family of domains ...  197     6e-58
CDD:407973 pfam18141, DUF5599, Domain of unknown function (DUF559...  167     2e-49
CDD:401391 pfam09416, UPF1_Zn_bind, RNA helicase (UPF2 interactin...  114     4e-30


>CDD:463780 pfam13087, AAA_12, AAA domain.  This family of domains contain 
a P-loop motif that is characteristic of the AAA superfamily. 
Many of the proteins in this family are conjugative transfer 
proteins.
Length=196

 Score = 257 bits (658),  Expect = 1e-80, Method: Composition-based stats.
 Identities = 104/201 (52%), Positives = 130/201 (65%), Gaps = 8/201 (4%)

Query  470  LNQSLFERLVILG-CSPIRLNVQYRMHPCLSEFPSNMFYEGSLQNGVSAFDRLRRDVDFP  528
            L++SLFERL  LG  + + L+ QYRMHP + EFPS +FY G L++G S  +R   D DF 
Sbjct  1    LDRSLFERLQELGPSAVVMLDTQYRMHPEIMEFPSKLFYGGKLKDGPSVAERPLPD-DFH  59

Query  529  WPVVDSPMMFWS-NLGNEEISASGTSYLNRTEATNVEKIVTRFFKAGV-QPADIGIITPY  586
             P    P++F   +   EE S  GTSY N  EA  V ++V +  K+G  +P+DIG+ITPY
Sbjct  60   LPDPLGPLVFIDVDGSEEEESDGGTSYSNEAEAELVVQLVEKLIKSGPEEPSDIGVITPY  119

Query  587  EGQRSYIVSSMQANGTFKKEHYKEIEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDP  646
              Q   I   ++     K E    IEV +VD FQGREKD II SCVRSN+  GIGFLSDP
Sbjct  120  RAQVRLIRKLLKRKLGGKLE----IEVNTVDGFQGREKDVIIFSCVRSNEKGGIGFLSDP  175

Query  647  RRLNVALTRAKYGLVILGNPK  667
            RRLNVALTRAK GL+I+GN K
Sbjct  176  RRLNVALTRAKRGLIIVGNAK  196


>CDD:404072 pfam13086, AAA_11, AAA domain.  This family of domains contain 
a P-loop motif that is characteristic of the AAA superfamily. 
Many of the proteins in this family are conjugative transfer 
proteins.
Length=248

 Score = 197 bits (502),  Expect = 6e-58, Method: Composition-based stats.
 Identities = 87/250 (35%), Positives = 122/250 (49%), Gaps = 52/250 (21%)

Query  264  SQINAVKSVLQRP-MSLIQGPPGTGKTVTSATIIYHLAKIN------GGQVLVCAPSNVA  316
            SQ  A++S L     +LIQGPPGTGKT T   +I  L          G ++LVCAPSN A
Sbjct  1    SQREAIRSALSSSHFTLIQGPPGTGKTTTIVELIRQLLSYPATSAAAGPRILVCAPSNAA  60

Query  317  VDQLCERIHRTG----LKTVRVTAKSREDVESPVGFLSLHEQV--RLNDS----------  360
            VD + ER+ R G     K VR+   +   +   V  +SL   V  +LN+           
Sbjct  61   VDNILERLLRKGQKYGPKIVRIGHPAA--ISEAVLPVSLDYLVESKLNNEEDAQIVKDIS  118

Query  361  --------------------------NIELIKLNQLKAELGELSSQDEKRLKQLTRSAER  394
                                      N +  KL Q + +L     +  K L++  +S ER
Sbjct  119  KELEKLAKALRAFEKEIIVEKLLKSRNKDKSKLEQERRKLRSERKELRKELRRREQSLER  178

Query  395  EILNNADVICCTCVGAGDPRLAKL-KFRTVLIDESTQSAEPECMIPLVLGCKQVVLVGDH  453
            EIL+ A ++C T  GAG   L+ L  F  V+IDE+ Q+ EP  +IPL+ G K+VVLVGD 
Sbjct  179  EILDEAQIVCSTLSGAGSRLLSSLANFDVVIIDEAAQALEPSTLIPLLRGPKKVVLVGDP  238

Query  454  QQLGPVIMNK  463
            +QL P +++K
Sbjct  239  KQLPPTVISK  248


>CDD:407973 pfam18141, DUF5599, Domain of unknown function (DUF5599).  This 
domain is found in UPF 1 present in Homo sapiens. UPF 1 is 
involved in the initiation of nonsense-medicated decay, the 
process of degradation of transcripts containing premature 
termination codons in order to control the quality of mRNA. 
The domain is referred to as 1B.
Length=93

 Score = 167 bits (425),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 57/95 (60%), Positives = 75/95 (79%), Gaps = 2/95 (2%)

Query  110  QSQDGLIVRWDLGLNNKHLASFILPKLELGDVKLAVGDEMRLKYTGELRPKWEGVGYVIK  169
            Q+QD + VRWD+GLN KHLA F LPKL+ G++KLAVGDE+RL+YTG L   WEGVG+V+K
Sbjct  1    QTQDDISVRWDVGLNKKHLAWFSLPKLDSGEMKLAVGDELRLRYTGSLAEPWEGVGHVVK  60

Query  170  IPNNQSDEVTIELRAKGDHKSVPTECTHNFTADYV  204
            IP+N S+EVT+ELR+     + PT+ TH FT ++V
Sbjct  61   IPDNSSEEVTLELRSSS--NNPPTDLTHGFTVEFV  93


>CDD:401391 pfam09416, UPF1_Zn_bind, RNA helicase (UPF2 interacting domain). 
 UPF1 is an essential RNA helicase that detects mRNAs containing 
premature stop codons and triggers their degradation. 
This domain contains 3 zinc binding motifs and forms interactions 
with another protein (UPF2) that is also involved nonsense-mediated 
mRNA decay (NMD).
Length=152

 Score = 114 bits (288),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 40/57 (70%), Positives = 47/57 (82%), Gaps = 0/57 (0%)

Query  1    MPSSKDMNWDTSRWQPLIEDRSFLPWLVAAPSDQEQLRARHLSPQLIAKLEEMWKEN  57
              S KDMNWDTS+WQPLIEDR FLPWLV  PS++EQLRAR ++P  I KLEE+WK+N
Sbjct  96   AKSLKDMNWDTSQWQPLIEDRQFLPWLVKVPSEEEQLRARQITPAQINKLEELWKDN  152



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1175685966


Query= TCONS_00002223

Length=914
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463780 pfam13087, AAA_12, AAA domain. This family of domains ...  257     1e-80
CDD:404072 pfam13086, AAA_11, AAA domain. This family of domains ...  197     6e-58
CDD:407973 pfam18141, DUF5599, Domain of unknown function (DUF559...  167     2e-49
CDD:401391 pfam09416, UPF1_Zn_bind, RNA helicase (UPF2 interactin...  114     4e-30


>CDD:463780 pfam13087, AAA_12, AAA domain.  This family of domains contain 
a P-loop motif that is characteristic of the AAA superfamily. 
Many of the proteins in this family are conjugative transfer 
proteins.
Length=196

 Score = 257 bits (658),  Expect = 1e-80, Method: Composition-based stats.
 Identities = 104/201 (52%), Positives = 130/201 (65%), Gaps = 8/201 (4%)

Query  470  LNQSLFERLVILG-CSPIRLNVQYRMHPCLSEFPSNMFYEGSLQNGVSAFDRLRRDVDFP  528
            L++SLFERL  LG  + + L+ QYRMHP + EFPS +FY G L++G S  +R   D DF 
Sbjct  1    LDRSLFERLQELGPSAVVMLDTQYRMHPEIMEFPSKLFYGGKLKDGPSVAERPLPD-DFH  59

Query  529  WPVVDSPMMFWS-NLGNEEISASGTSYLNRTEATNVEKIVTRFFKAGV-QPADIGIITPY  586
             P    P++F   +   EE S  GTSY N  EA  V ++V +  K+G  +P+DIG+ITPY
Sbjct  60   LPDPLGPLVFIDVDGSEEEESDGGTSYSNEAEAELVVQLVEKLIKSGPEEPSDIGVITPY  119

Query  587  EGQRSYIVSSMQANGTFKKEHYKEIEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDP  646
              Q   I   ++     K E    IEV +VD FQGREKD II SCVRSN+  GIGFLSDP
Sbjct  120  RAQVRLIRKLLKRKLGGKLE----IEVNTVDGFQGREKDVIIFSCVRSNEKGGIGFLSDP  175

Query  647  RRLNVALTRAKYGLVILGNPK  667
            RRLNVALTRAK GL+I+GN K
Sbjct  176  RRLNVALTRAKRGLIIVGNAK  196


>CDD:404072 pfam13086, AAA_11, AAA domain.  This family of domains contain 
a P-loop motif that is characteristic of the AAA superfamily. 
Many of the proteins in this family are conjugative transfer 
proteins.
Length=248

 Score = 197 bits (502),  Expect = 6e-58, Method: Composition-based stats.
 Identities = 87/250 (35%), Positives = 122/250 (49%), Gaps = 52/250 (21%)

Query  264  SQINAVKSVLQRP-MSLIQGPPGTGKTVTSATIIYHLAKIN------GGQVLVCAPSNVA  316
            SQ  A++S L     +LIQGPPGTGKT T   +I  L          G ++LVCAPSN A
Sbjct  1    SQREAIRSALSSSHFTLIQGPPGTGKTTTIVELIRQLLSYPATSAAAGPRILVCAPSNAA  60

Query  317  VDQLCERIHRTG----LKTVRVTAKSREDVESPVGFLSLHEQV--RLNDS----------  360
            VD + ER+ R G     K VR+   +   +   V  +SL   V  +LN+           
Sbjct  61   VDNILERLLRKGQKYGPKIVRIGHPAA--ISEAVLPVSLDYLVESKLNNEEDAQIVKDIS  118

Query  361  --------------------------NIELIKLNQLKAELGELSSQDEKRLKQLTRSAER  394
                                      N +  KL Q + +L     +  K L++  +S ER
Sbjct  119  KELEKLAKALRAFEKEIIVEKLLKSRNKDKSKLEQERRKLRSERKELRKELRRREQSLER  178

Query  395  EILNNADVICCTCVGAGDPRLAKL-KFRTVLIDESTQSAEPECMIPLVLGCKQVVLVGDH  453
            EIL+ A ++C T  GAG   L+ L  F  V+IDE+ Q+ EP  +IPL+ G K+VVLVGD 
Sbjct  179  EILDEAQIVCSTLSGAGSRLLSSLANFDVVIIDEAAQALEPSTLIPLLRGPKKVVLVGDP  238

Query  454  QQLGPVIMNK  463
            +QL P +++K
Sbjct  239  KQLPPTVISK  248


>CDD:407973 pfam18141, DUF5599, Domain of unknown function (DUF5599).  This 
domain is found in UPF 1 present in Homo sapiens. UPF 1 is 
involved in the initiation of nonsense-medicated decay, the 
process of degradation of transcripts containing premature 
termination codons in order to control the quality of mRNA. 
The domain is referred to as 1B.
Length=93

 Score = 167 bits (425),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 57/95 (60%), Positives = 75/95 (79%), Gaps = 2/95 (2%)

Query  110  QSQDGLIVRWDLGLNNKHLASFILPKLELGDVKLAVGDEMRLKYTGELRPKWEGVGYVIK  169
            Q+QD + VRWD+GLN KHLA F LPKL+ G++KLAVGDE+RL+YTG L   WEGVG+V+K
Sbjct  1    QTQDDISVRWDVGLNKKHLAWFSLPKLDSGEMKLAVGDELRLRYTGSLAEPWEGVGHVVK  60

Query  170  IPNNQSDEVTIELRAKGDHKSVPTECTHNFTADYV  204
            IP+N S+EVT+ELR+     + PT+ TH FT ++V
Sbjct  61   IPDNSSEEVTLELRSSS--NNPPTDLTHGFTVEFV  93


>CDD:401391 pfam09416, UPF1_Zn_bind, RNA helicase (UPF2 interacting domain). 
 UPF1 is an essential RNA helicase that detects mRNAs containing 
premature stop codons and triggers their degradation. 
This domain contains 3 zinc binding motifs and forms interactions 
with another protein (UPF2) that is also involved nonsense-mediated 
mRNA decay (NMD).
Length=152

 Score = 114 bits (288),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 40/57 (70%), Positives = 47/57 (82%), Gaps = 0/57 (0%)

Query  1    MPSSKDMNWDTSRWQPLIEDRSFLPWLVAAPSDQEQLRARHLSPQLIAKLEEMWKEN  57
              S KDMNWDTS+WQPLIEDR FLPWLV  PS++EQLRAR ++P  I KLEE+WK+N
Sbjct  96   AKSLKDMNWDTSQWQPLIEDRQFLPWLVKVPSEEEQLRARQITPAQINKLEELWKDN  152



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1175685966


Query= TCONS_00002225

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalyt...  58.0    3e-11


>CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain. 
 Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary 
fold is highly similar to that of tyrosine-specific phosphatases, 
except for a "recognition" region.
Length=127

 Score = 58.0 bits (141),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 46/146 (32%), Positives = 64/146 (44%), Gaps = 24/146 (16%)

Query  102  LYLGPVSCLKDKAWLAQEGFTLLLAIRNKRSAQARLVSGEKVGAELGIEADAVDVMDNQE  161
            LYLG      D A+L++ G T ++   N        V+ E      GI    + V DN E
Sbjct  1    LYLGSKPTASD-AFLSKLGITAVI---N--------VTREVDLYNSGILYLRIPVEDNHE  48

Query  162  -LISA-FPYAIRRINDHLVSCGPAVHSNAPKKIFVFCESGNERSATVVIAYLMVMLNLNM  219
              IS     A+  I+D               K+ V C++G  RSAT++IAYLM   NL++
Sbjct  49   TNISKYLEEAVEFIDD--------ARQKG-GKVLVHCQAGISRSATLIIAYLMKTRNLSL  99

Query  220  AVASHLVQLRRFCICVEEPL-RELLA  244
              A   V+ RR  I       R+LL 
Sbjct  100  NEAYSFVKERRPGISPNFGFKRQLLE  125



Lambda      K        H        a         alpha
   0.321    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00002226

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalyt...  58.0    3e-11


>CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain. 
 Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary 
fold is highly similar to that of tyrosine-specific phosphatases, 
except for a "recognition" region.
Length=127

 Score = 58.0 bits (141),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 46/146 (32%), Positives = 64/146 (44%), Gaps = 24/146 (16%)

Query  102  LYLGPVSCLKDKAWLAQEGFTLLLAIRNKRSAQARLVSGEKVGAELGIEADAVDVMDNQE  161
            LYLG      D A+L++ G T ++   N        V+ E      GI    + V DN E
Sbjct  1    LYLGSKPTASD-AFLSKLGITAVI---N--------VTREVDLYNSGILYLRIPVEDNHE  48

Query  162  -LISA-FPYAIRRINDHLVSCGPAVHSNAPKKIFVFCESGNERSATVVIAYLMVMLNLNM  219
              IS     A+  I+D               K+ V C++G  RSAT++IAYLM   NL++
Sbjct  49   TNISKYLEEAVEFIDD--------ARQKG-GKVLVHCQAGISRSATLIIAYLMKTRNLSL  99

Query  220  AVASHLVQLRRFCICVEEPL-RELLA  244
              A   V+ RR  I       R+LL 
Sbjct  100  NEAYSFVKERRPGISPNFGFKRQLLE  125



Lambda      K        H        a         alpha
   0.321    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00007589

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalyt...  58.0    3e-11


>CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain. 
 Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary 
fold is highly similar to that of tyrosine-specific phosphatases, 
except for a "recognition" region.
Length=127

 Score = 58.0 bits (141),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 46/146 (32%), Positives = 64/146 (44%), Gaps = 24/146 (16%)

Query  102  LYLGPVSCLKDKAWLAQEGFTLLLAIRNKRSAQARLVSGEKVGAELGIEADAVDVMDNQE  161
            LYLG      D A+L++ G T ++   N        V+ E      GI    + V DN E
Sbjct  1    LYLGSKPTASD-AFLSKLGITAVI---N--------VTREVDLYNSGILYLRIPVEDNHE  48

Query  162  -LISA-FPYAIRRINDHLVSCGPAVHSNAPKKIFVFCESGNERSATVVIAYLMVMLNLNM  219
              IS     A+  I+D               K+ V C++G  RSAT++IAYLM   NL++
Sbjct  49   TNISKYLEEAVEFIDD--------ARQKG-GKVLVHCQAGISRSATLIIAYLMKTRNLSL  99

Query  220  AVASHLVQLRRFCICVEEPL-RELLA  244
              A   V+ RR  I       R+LL 
Sbjct  100  NEAYSFVKERRPGISPNFGFKRQLLE  125



Lambda      K        H        a         alpha
   0.321    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00007590

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00002227

Length=914
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463780 pfam13087, AAA_12, AAA domain. This family of domains ...  257     1e-80
CDD:404072 pfam13086, AAA_11, AAA domain. This family of domains ...  197     6e-58
CDD:407973 pfam18141, DUF5599, Domain of unknown function (DUF559...  167     2e-49
CDD:401391 pfam09416, UPF1_Zn_bind, RNA helicase (UPF2 interactin...  114     4e-30


>CDD:463780 pfam13087, AAA_12, AAA domain.  This family of domains contain 
a P-loop motif that is characteristic of the AAA superfamily. 
Many of the proteins in this family are conjugative transfer 
proteins.
Length=196

 Score = 257 bits (658),  Expect = 1e-80, Method: Composition-based stats.
 Identities = 104/201 (52%), Positives = 130/201 (65%), Gaps = 8/201 (4%)

Query  470  LNQSLFERLVILG-CSPIRLNVQYRMHPCLSEFPSNMFYEGSLQNGVSAFDRLRRDVDFP  528
            L++SLFERL  LG  + + L+ QYRMHP + EFPS +FY G L++G S  +R   D DF 
Sbjct  1    LDRSLFERLQELGPSAVVMLDTQYRMHPEIMEFPSKLFYGGKLKDGPSVAERPLPD-DFH  59

Query  529  WPVVDSPMMFWS-NLGNEEISASGTSYLNRTEATNVEKIVTRFFKAGV-QPADIGIITPY  586
             P    P++F   +   EE S  GTSY N  EA  V ++V +  K+G  +P+DIG+ITPY
Sbjct  60   LPDPLGPLVFIDVDGSEEEESDGGTSYSNEAEAELVVQLVEKLIKSGPEEPSDIGVITPY  119

Query  587  EGQRSYIVSSMQANGTFKKEHYKEIEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDP  646
              Q   I   ++     K E    IEV +VD FQGREKD II SCVRSN+  GIGFLSDP
Sbjct  120  RAQVRLIRKLLKRKLGGKLE----IEVNTVDGFQGREKDVIIFSCVRSNEKGGIGFLSDP  175

Query  647  RRLNVALTRAKYGLVILGNPK  667
            RRLNVALTRAK GL+I+GN K
Sbjct  176  RRLNVALTRAKRGLIIVGNAK  196


>CDD:404072 pfam13086, AAA_11, AAA domain.  This family of domains contain 
a P-loop motif that is characteristic of the AAA superfamily. 
Many of the proteins in this family are conjugative transfer 
proteins.
Length=248

 Score = 197 bits (502),  Expect = 6e-58, Method: Composition-based stats.
 Identities = 87/250 (35%), Positives = 122/250 (49%), Gaps = 52/250 (21%)

Query  264  SQINAVKSVLQRP-MSLIQGPPGTGKTVTSATIIYHLAKIN------GGQVLVCAPSNVA  316
            SQ  A++S L     +LIQGPPGTGKT T   +I  L          G ++LVCAPSN A
Sbjct  1    SQREAIRSALSSSHFTLIQGPPGTGKTTTIVELIRQLLSYPATSAAAGPRILVCAPSNAA  60

Query  317  VDQLCERIHRTG----LKTVRVTAKSREDVESPVGFLSLHEQV--RLNDS----------  360
            VD + ER+ R G     K VR+   +   +   V  +SL   V  +LN+           
Sbjct  61   VDNILERLLRKGQKYGPKIVRIGHPAA--ISEAVLPVSLDYLVESKLNNEEDAQIVKDIS  118

Query  361  --------------------------NIELIKLNQLKAELGELSSQDEKRLKQLTRSAER  394
                                      N +  KL Q + +L     +  K L++  +S ER
Sbjct  119  KELEKLAKALRAFEKEIIVEKLLKSRNKDKSKLEQERRKLRSERKELRKELRRREQSLER  178

Query  395  EILNNADVICCTCVGAGDPRLAKL-KFRTVLIDESTQSAEPECMIPLVLGCKQVVLVGDH  453
            EIL+ A ++C T  GAG   L+ L  F  V+IDE+ Q+ EP  +IPL+ G K+VVLVGD 
Sbjct  179  EILDEAQIVCSTLSGAGSRLLSSLANFDVVIIDEAAQALEPSTLIPLLRGPKKVVLVGDP  238

Query  454  QQLGPVIMNK  463
            +QL P +++K
Sbjct  239  KQLPPTVISK  248


>CDD:407973 pfam18141, DUF5599, Domain of unknown function (DUF5599).  This 
domain is found in UPF 1 present in Homo sapiens. UPF 1 is 
involved in the initiation of nonsense-medicated decay, the 
process of degradation of transcripts containing premature 
termination codons in order to control the quality of mRNA. 
The domain is referred to as 1B.
Length=93

 Score = 167 bits (425),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 57/95 (60%), Positives = 75/95 (79%), Gaps = 2/95 (2%)

Query  110  QSQDGLIVRWDLGLNNKHLASFILPKLELGDVKLAVGDEMRLKYTGELRPKWEGVGYVIK  169
            Q+QD + VRWD+GLN KHLA F LPKL+ G++KLAVGDE+RL+YTG L   WEGVG+V+K
Sbjct  1    QTQDDISVRWDVGLNKKHLAWFSLPKLDSGEMKLAVGDELRLRYTGSLAEPWEGVGHVVK  60

Query  170  IPNNQSDEVTIELRAKGDHKSVPTECTHNFTADYV  204
            IP+N S+EVT+ELR+     + PT+ TH FT ++V
Sbjct  61   IPDNSSEEVTLELRSSS--NNPPTDLTHGFTVEFV  93


>CDD:401391 pfam09416, UPF1_Zn_bind, RNA helicase (UPF2 interacting domain). 
 UPF1 is an essential RNA helicase that detects mRNAs containing 
premature stop codons and triggers their degradation. 
This domain contains 3 zinc binding motifs and forms interactions 
with another protein (UPF2) that is also involved nonsense-mediated 
mRNA decay (NMD).
Length=152

 Score = 114 bits (288),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 40/57 (70%), Positives = 47/57 (82%), Gaps = 0/57 (0%)

Query  1    MPSSKDMNWDTSRWQPLIEDRSFLPWLVAAPSDQEQLRARHLSPQLIAKLEEMWKEN  57
              S KDMNWDTS+WQPLIEDR FLPWLV  PS++EQLRAR ++P  I KLEE+WK+N
Sbjct  96   AKSLKDMNWDTSQWQPLIEDRQFLPWLVKVPSEEEQLRARQITPAQINKLEELWKDN  152



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1175685966


Query= TCONS_00002228

Length=764
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395163 pfam00218, IGPS, Indole-3-glycerol phosphate synthase      380     2e-128
CDD:395067 pfam00117, GATase, Glutamine amidotransferase class-I      208     2e-63 
CDD:395566 pfam00697, PRAI, N-(5'phosphoribosyl)anthranilate (PRA...  189     2e-56 


>CDD:395163 pfam00218, IGPS, Indole-3-glycerol phosphate synthase.  
Length=252

 Score = 380 bits (978),  Expect = 2e-128, Method: Composition-based stats.
 Identities = 139/262 (53%), Positives = 173/262 (66%), Gaps = 10/262 (4%)

Query  250  LNKIYDHRRAAVAVQKLIPSQRPEDLQAAYDLNLAPPQISFPCRLRQSPYSLSLMAEIKR  309
            L KI   +RA VA +K  P     DLQAA     APP  SF   LR+S    +L+AE+K+
Sbjct  1    LEKIVADKRAEVAARKARPPL--ADLQAAAR---APPTRSFYDALRESRGRPALIAEVKK  55

Query  310  ASPSKGMIAETACAPAQARQYAKAGASVISVLTEPEWFKGSIDDLRAVRQSLEGLPNRPA  369
            ASPSKG+I E       AR Y  AGAS ISVLT+P++F+GSI+ LRAVRQ++        
Sbjct  56   ASPSKGLIREDFDPAEIARVYEAAGASAISVLTDPKYFQGSIEYLRAVRQAVSLP-----  110

Query  370  VLRKEFIFDEYQILEARLAGADTVLLIVKMLSVELLTRLYNYSRSLGMEPLVEVNTPEEM  429
            VLRK+FI DEYQI EARLAGAD +LLIV +L  ELL  LY Y+RSLGME LVEV+  EE+
Sbjct  111  VLRKDFIIDEYQIDEARLAGADAILLIVAVLDDELLEELYAYARSLGMEVLVEVHNEEEL  170

Query  430  KIAVELGAEVVGVNNRDLTSFEVDLGTTSRLMDLVPESTIVCALSGISGPKDVEAYKNDG  489
            + A+ LGA+++GVNNR+L +FEVDL TT RL  L+P   ++ A SGI  P DV   K  G
Sbjct  171  ERALALGAKIIGVNNRNLKTFEVDLNTTRRLAPLIPADVLLVAESGIYTPADVRELKEHG  230

Query  490  VKAILVGEALMRAPNTSAFVAE  511
              A LVGE+LMR  +  A + E
Sbjct  231  ANAFLVGESLMRQEDVRAAIRE  252


>CDD:395067 pfam00117, GATase, Glutamine amidotransferase class-I.  
Length=188

 Score = 208 bits (531),  Expect = 2e-63, Method: Composition-based stats.
 Identities = 88/192 (46%), Positives = 114/192 (59%), Gaps = 9/192 (5%)

Query  27   ILIDNYDSFTWNVYQYLVLEGATVAVFRNDEITLEELIAKKPTQLVISPGPGHPETDAGI  86
            +LIDN DSFT+N+ + L   G  V V  ND    EE++ + P  +++S GPG P   AG 
Sbjct  1    LLIDNGDSFTYNLARALRELGVEVTVVPNDT-PAEEILEENPDGIILSGGPGSP-GAAGG  58

Query  87   SNAAIKY-FGGKIPVFGVCMGQQCMITSFGGKVDVFG-EILHGKTSILKHDGKGVYEGLP  144
            +  AI+     KIP+ G+C+G Q +  +FGGKV        HGK S +  DG G++ GLP
Sbjct  59   AIEAIREARELKIPILGICLGHQLLALAFGGKVVKAKKFGHHGKNSPVGDDGCGLFYGLP  118

Query  145  PAVEVTRYHSLAGTHATIPDCLEVTSTVPLNDGSGKDVIMGIRHKQYAVEGVQFHPESIL  204
                V RYHS A    T+PD LEVT+T   NDG+    IMGIRHK+  + GVQFHPESIL
Sbjct  119  NVFIVRRYHSYAVDPDTLPDGLEVTATS-ENDGT----IMGIRHKKLPIFGVQFHPESIL  173

Query  205  TEHGRTMFRNFL  216
            T HG  +  NF 
Sbjct  174  TPHGPEILFNFF  185


>CDD:395566 pfam00697, PRAI, N-(5'phosphoribosyl)anthranilate (PRA) isomerase. 
 
Length=193

 Score = 189 bits (482),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 99/241 (41%), Positives = 121/241 (50%), Gaps = 61/241 (25%)

Query  530  VKICGTRSEEGARAAIEAGADLVGIILVEGRKRCVSDDVALRIAQVVKSTQRPTVEPDST  589
             KICG       +AA++AGAD +G+I  E  KR V                         
Sbjct  1    AKICGLTRLSDVKAAVKAGADYLGLIFSESSKRQV-------------------------  35

Query  590  SPANTFSSDFFDHSTRVLRHPTRALLVGVFQNQPLAYILDKQQKLGLDVVQLHGSEPIEW  649
                           + LR P   LLVGVF NQP+  +L   Q LGLDVVQLHG E  E+
Sbjct  36   ----------SPEQAQELRSPVPLLLVGVFVNQPIDDVLRIAQVLGLDVVQLHGDEDQEY  85

Query  650  ASLIP--VPVIRKFALDES----SIARRAYH-SLPLLDSGAGGSGELLDQSHVQKVLDGD  702
             +L+P  VPVI+   + +S     IARRA H  LPLLDSGAGG+GEL D S V K L   
Sbjct  86   ENLLPTGVPVIKAIWVPDSVDTVDIARRADHVDLPLLDSGAGGTGELFDWSLVSKWL--K  143

Query  703  DGLRVILAGGLDTSNVVDTIRKLG------DSGHKVVGVDVSSGVESDGSQDPAKIRAFV  756
             GL+VILAGGL+  NVV+ I+  G       SG           VE++G +D  KIR FV
Sbjct  144  SGLKVILAGGLNPDNVVEAIKTPGVIGVDVSSG-----------VETNGIKDLNKIRKFV  192

Query  757  Q  757
            Q
Sbjct  193  Q  193



Lambda      K        H        a         alpha
   0.316    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 974951840


Query= TCONS_00002229

Length=764
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395163 pfam00218, IGPS, Indole-3-glycerol phosphate synthase      380     2e-128
CDD:395067 pfam00117, GATase, Glutamine amidotransferase class-I      208     2e-63 
CDD:395566 pfam00697, PRAI, N-(5'phosphoribosyl)anthranilate (PRA...  189     2e-56 


>CDD:395163 pfam00218, IGPS, Indole-3-glycerol phosphate synthase.  
Length=252

 Score = 380 bits (978),  Expect = 2e-128, Method: Composition-based stats.
 Identities = 139/262 (53%), Positives = 173/262 (66%), Gaps = 10/262 (4%)

Query  250  LNKIYDHRRAAVAVQKLIPSQRPEDLQAAYDLNLAPPQISFPCRLRQSPYSLSLMAEIKR  309
            L KI   +RA VA +K  P     DLQAA     APP  SF   LR+S    +L+AE+K+
Sbjct  1    LEKIVADKRAEVAARKARPPL--ADLQAAAR---APPTRSFYDALRESRGRPALIAEVKK  55

Query  310  ASPSKGMIAETACAPAQARQYAKAGASVISVLTEPEWFKGSIDDLRAVRQSLEGLPNRPA  369
            ASPSKG+I E       AR Y  AGAS ISVLT+P++F+GSI+ LRAVRQ++        
Sbjct  56   ASPSKGLIREDFDPAEIARVYEAAGASAISVLTDPKYFQGSIEYLRAVRQAVSLP-----  110

Query  370  VLRKEFIFDEYQILEARLAGADTVLLIVKMLSVELLTRLYNYSRSLGMEPLVEVNTPEEM  429
            VLRK+FI DEYQI EARLAGAD +LLIV +L  ELL  LY Y+RSLGME LVEV+  EE+
Sbjct  111  VLRKDFIIDEYQIDEARLAGADAILLIVAVLDDELLEELYAYARSLGMEVLVEVHNEEEL  170

Query  430  KIAVELGAEVVGVNNRDLTSFEVDLGTTSRLMDLVPESTIVCALSGISGPKDVEAYKNDG  489
            + A+ LGA+++GVNNR+L +FEVDL TT RL  L+P   ++ A SGI  P DV   K  G
Sbjct  171  ERALALGAKIIGVNNRNLKTFEVDLNTTRRLAPLIPADVLLVAESGIYTPADVRELKEHG  230

Query  490  VKAILVGEALMRAPNTSAFVAE  511
              A LVGE+LMR  +  A + E
Sbjct  231  ANAFLVGESLMRQEDVRAAIRE  252


>CDD:395067 pfam00117, GATase, Glutamine amidotransferase class-I.  
Length=188

 Score = 208 bits (531),  Expect = 2e-63, Method: Composition-based stats.
 Identities = 88/192 (46%), Positives = 114/192 (59%), Gaps = 9/192 (5%)

Query  27   ILIDNYDSFTWNVYQYLVLEGATVAVFRNDEITLEELIAKKPTQLVISPGPGHPETDAGI  86
            +LIDN DSFT+N+ + L   G  V V  ND    EE++ + P  +++S GPG P   AG 
Sbjct  1    LLIDNGDSFTYNLARALRELGVEVTVVPNDT-PAEEILEENPDGIILSGGPGSP-GAAGG  58

Query  87   SNAAIKY-FGGKIPVFGVCMGQQCMITSFGGKVDVFG-EILHGKTSILKHDGKGVYEGLP  144
            +  AI+     KIP+ G+C+G Q +  +FGGKV        HGK S +  DG G++ GLP
Sbjct  59   AIEAIREARELKIPILGICLGHQLLALAFGGKVVKAKKFGHHGKNSPVGDDGCGLFYGLP  118

Query  145  PAVEVTRYHSLAGTHATIPDCLEVTSTVPLNDGSGKDVIMGIRHKQYAVEGVQFHPESIL  204
                V RYHS A    T+PD LEVT+T   NDG+    IMGIRHK+  + GVQFHPESIL
Sbjct  119  NVFIVRRYHSYAVDPDTLPDGLEVTATS-ENDGT----IMGIRHKKLPIFGVQFHPESIL  173

Query  205  TEHGRTMFRNFL  216
            T HG  +  NF 
Sbjct  174  TPHGPEILFNFF  185


>CDD:395566 pfam00697, PRAI, N-(5'phosphoribosyl)anthranilate (PRA) isomerase. 
 
Length=193

 Score = 189 bits (482),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 99/241 (41%), Positives = 121/241 (50%), Gaps = 61/241 (25%)

Query  530  VKICGTRSEEGARAAIEAGADLVGIILVEGRKRCVSDDVALRIAQVVKSTQRPTVEPDST  589
             KICG       +AA++AGAD +G+I  E  KR V                         
Sbjct  1    AKICGLTRLSDVKAAVKAGADYLGLIFSESSKRQV-------------------------  35

Query  590  SPANTFSSDFFDHSTRVLRHPTRALLVGVFQNQPLAYILDKQQKLGLDVVQLHGSEPIEW  649
                           + LR P   LLVGVF NQP+  +L   Q LGLDVVQLHG E  E+
Sbjct  36   ----------SPEQAQELRSPVPLLLVGVFVNQPIDDVLRIAQVLGLDVVQLHGDEDQEY  85

Query  650  ASLIP--VPVIRKFALDES----SIARRAYH-SLPLLDSGAGGSGELLDQSHVQKVLDGD  702
             +L+P  VPVI+   + +S     IARRA H  LPLLDSGAGG+GEL D S V K L   
Sbjct  86   ENLLPTGVPVIKAIWVPDSVDTVDIARRADHVDLPLLDSGAGGTGELFDWSLVSKWL--K  143

Query  703  DGLRVILAGGLDTSNVVDTIRKLG------DSGHKVVGVDVSSGVESDGSQDPAKIRAFV  756
             GL+VILAGGL+  NVV+ I+  G       SG           VE++G +D  KIR FV
Sbjct  144  SGLKVILAGGLNPDNVVEAIKTPGVIGVDVSSG-----------VETNGIKDLNKIRKFV  192

Query  757  Q  757
            Q
Sbjct  193  Q  193



Lambda      K        H        a         alpha
   0.316    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 974951840


Query= TCONS_00007591

Length=299
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461304 pfam04427, Brix, Brix domain                               111     2e-30


>CDD:461304 pfam04427, Brix, Brix domain.  
Length=180

 Score = 111 bits (279),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 79/191 (41%), Gaps = 32/191 (17%)

Query  97   SRSPSVRLGTFAKEIRLLLP--TSIRLNRGNLVLPDLVASANAAALTDMVLLHEHRGTPT  154
             R  S RL    K++R L+   T+  L R +  L D+         T +  L E      
Sbjct  1    GRKTSSRLRQLLKDLRSLMKPHTASFLKRNSNPLEDV---------THLEFLSEKN--DC  49

Query  155  AMTISHL-----PHGPTASFSLHNVVLRADIPNAARGTVSESYPHLIFEG-FKTKLGLRV  208
            ++ +        P+GPT  F + N  L  D+       +  S P L+F G F +    ++
Sbjct  50   SLFVFGSHSKKRPNGPTLEFGVENYSLMKDLKGTG-NCLKGSRPLLVFNGSFFSDPNFKL  108

Query  209  VQ-ILKHLF-PPREAGKVGNRVVTFV---NKEDNIEVRHHVFV-------KTGYRDVELA  256
            ++ + + LF  P    K  +RV+ F    N+ D I  RH+           T    VEL 
Sbjct  109  LKSLFQDLFRVPPINLKGIDRVILFSAYDNQPDKIWFRHYQIRLKEKKKSGTKLPRVELV  168

Query  257  EVGPRMTMRLF  267
            E+GPR  ++L 
Sbjct  169  EIGPRFDLKLR  179



Lambda      K        H        a         alpha
   0.318    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00007592

Length=299
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461304 pfam04427, Brix, Brix domain                               111     2e-30


>CDD:461304 pfam04427, Brix, Brix domain.  
Length=180

 Score = 111 bits (279),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 79/191 (41%), Gaps = 32/191 (17%)

Query  97   SRSPSVRLGTFAKEIRLLLP--TSIRLNRGNLVLPDLVASANAAALTDMVLLHEHRGTPT  154
             R  S RL    K++R L+   T+  L R +  L D+         T +  L E      
Sbjct  1    GRKTSSRLRQLLKDLRSLMKPHTASFLKRNSNPLEDV---------THLEFLSEKN--DC  49

Query  155  AMTISHL-----PHGPTASFSLHNVVLRADIPNAARGTVSESYPHLIFEG-FKTKLGLRV  208
            ++ +        P+GPT  F + N  L  D+       +  S P L+F G F +    ++
Sbjct  50   SLFVFGSHSKKRPNGPTLEFGVENYSLMKDLKGTG-NCLKGSRPLLVFNGSFFSDPNFKL  108

Query  209  VQ-ILKHLF-PPREAGKVGNRVVTFV---NKEDNIEVRHHVFV-------KTGYRDVELA  256
            ++ + + LF  P    K  +RV+ F    N+ D I  RH+           T    VEL 
Sbjct  109  LKSLFQDLFRVPPINLKGIDRVILFSAYDNQPDKIWFRHYQIRLKEKKKSGTKLPRVELV  168

Query  257  EVGPRMTMRLF  267
            E+GPR  ++L 
Sbjct  169  EIGPRFDLKLR  179



Lambda      K        H        a         alpha
   0.318    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00007593

Length=157
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461304 pfam04427, Brix, Brix domain                               90.3    4e-24


>CDD:461304 pfam04427, Brix, Brix domain.  
Length=180

 Score = 90.3 bits (225),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 35/137 (26%), Positives = 57/137 (42%), Gaps = 19/137 (14%)

Query  7    HRGTPTAMTISHL-----PHGPTASFSLHNVVLRADIPNAARGTVSESYPHLIFEG-FKT  60
                  ++ +        P+GPT  F + N  L  D+       +  S P L+F G F +
Sbjct  44   SEKNDCSLFVFGSHSKKRPNGPTLEFGVENYSLMKDLKGTG-NCLKGSRPLLVFNGSFFS  102

Query  61   KLGLRVVQ-ILKHLF-PPREAGKVGNRVVTFV---NKEDNIEVRHHVFV-------KTGY  108
                ++++ + + LF  P    K  +RV+ F    N+ D I  RH+           T  
Sbjct  103  DPNFKLLKSLFQDLFRVPPINLKGIDRVILFSAYDNQPDKIWFRHYQIRLKEKKKSGTKL  162

Query  109  RDVELAEVGPRMTMRLF  125
              VEL E+GPR  ++L 
Sbjct  163  PRVELVEIGPRFDLKLR  179



Lambda      K        H        a         alpha
   0.320    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00007594

Length=764
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395163 pfam00218, IGPS, Indole-3-glycerol phosphate synthase      380     2e-128
CDD:395067 pfam00117, GATase, Glutamine amidotransferase class-I      208     2e-63 
CDD:395566 pfam00697, PRAI, N-(5'phosphoribosyl)anthranilate (PRA...  189     2e-56 


>CDD:395163 pfam00218, IGPS, Indole-3-glycerol phosphate synthase.  
Length=252

 Score = 380 bits (978),  Expect = 2e-128, Method: Composition-based stats.
 Identities = 139/262 (53%), Positives = 173/262 (66%), Gaps = 10/262 (4%)

Query  250  LNKIYDHRRAAVAVQKLIPSQRPEDLQAAYDLNLAPPQISFPCRLRQSPYSLSLMAEIKR  309
            L KI   +RA VA +K  P     DLQAA     APP  SF   LR+S    +L+AE+K+
Sbjct  1    LEKIVADKRAEVAARKARPPL--ADLQAAAR---APPTRSFYDALRESRGRPALIAEVKK  55

Query  310  ASPSKGMIAETACAPAQARQYAKAGASVISVLTEPEWFKGSIDDLRAVRQSLEGLPNRPA  369
            ASPSKG+I E       AR Y  AGAS ISVLT+P++F+GSI+ LRAVRQ++        
Sbjct  56   ASPSKGLIREDFDPAEIARVYEAAGASAISVLTDPKYFQGSIEYLRAVRQAVSLP-----  110

Query  370  VLRKEFIFDEYQILEARLAGADTVLLIVKMLSVELLTRLYNYSRSLGMEPLVEVNTPEEM  429
            VLRK+FI DEYQI EARLAGAD +LLIV +L  ELL  LY Y+RSLGME LVEV+  EE+
Sbjct  111  VLRKDFIIDEYQIDEARLAGADAILLIVAVLDDELLEELYAYARSLGMEVLVEVHNEEEL  170

Query  430  KIAVELGAEVVGVNNRDLTSFEVDLGTTSRLMDLVPESTIVCALSGISGPKDVEAYKNDG  489
            + A+ LGA+++GVNNR+L +FEVDL TT RL  L+P   ++ A SGI  P DV   K  G
Sbjct  171  ERALALGAKIIGVNNRNLKTFEVDLNTTRRLAPLIPADVLLVAESGIYTPADVRELKEHG  230

Query  490  VKAILVGEALMRAPNTSAFVAE  511
              A LVGE+LMR  +  A + E
Sbjct  231  ANAFLVGESLMRQEDVRAAIRE  252


>CDD:395067 pfam00117, GATase, Glutamine amidotransferase class-I.  
Length=188

 Score = 208 bits (531),  Expect = 2e-63, Method: Composition-based stats.
 Identities = 88/192 (46%), Positives = 114/192 (59%), Gaps = 9/192 (5%)

Query  27   ILIDNYDSFTWNVYQYLVLEGATVAVFRNDEITLEELIAKKPTQLVISPGPGHPETDAGI  86
            +LIDN DSFT+N+ + L   G  V V  ND    EE++ + P  +++S GPG P   AG 
Sbjct  1    LLIDNGDSFTYNLARALRELGVEVTVVPNDT-PAEEILEENPDGIILSGGPGSP-GAAGG  58

Query  87   SNAAIKY-FGGKIPVFGVCMGQQCMITSFGGKVDVFG-EILHGKTSILKHDGKGVYEGLP  144
            +  AI+     KIP+ G+C+G Q +  +FGGKV        HGK S +  DG G++ GLP
Sbjct  59   AIEAIREARELKIPILGICLGHQLLALAFGGKVVKAKKFGHHGKNSPVGDDGCGLFYGLP  118

Query  145  PAVEVTRYHSLAGTHATIPDCLEVTSTVPLNDGSGKDVIMGIRHKQYAVEGVQFHPESIL  204
                V RYHS A    T+PD LEVT+T   NDG+    IMGIRHK+  + GVQFHPESIL
Sbjct  119  NVFIVRRYHSYAVDPDTLPDGLEVTATS-ENDGT----IMGIRHKKLPIFGVQFHPESIL  173

Query  205  TEHGRTMFRNFL  216
            T HG  +  NF 
Sbjct  174  TPHGPEILFNFF  185


>CDD:395566 pfam00697, PRAI, N-(5'phosphoribosyl)anthranilate (PRA) isomerase. 
 
Length=193

 Score = 189 bits (482),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 99/241 (41%), Positives = 121/241 (50%), Gaps = 61/241 (25%)

Query  530  VKICGTRSEEGARAAIEAGADLVGIILVEGRKRCVSDDVALRIAQVVKSTQRPTVEPDST  589
             KICG       +AA++AGAD +G+I  E  KR V                         
Sbjct  1    AKICGLTRLSDVKAAVKAGADYLGLIFSESSKRQV-------------------------  35

Query  590  SPANTFSSDFFDHSTRVLRHPTRALLVGVFQNQPLAYILDKQQKLGLDVVQLHGSEPIEW  649
                           + LR P   LLVGVF NQP+  +L   Q LGLDVVQLHG E  E+
Sbjct  36   ----------SPEQAQELRSPVPLLLVGVFVNQPIDDVLRIAQVLGLDVVQLHGDEDQEY  85

Query  650  ASLIP--VPVIRKFALDES----SIARRAYH-SLPLLDSGAGGSGELLDQSHVQKVLDGD  702
             +L+P  VPVI+   + +S     IARRA H  LPLLDSGAGG+GEL D S V K L   
Sbjct  86   ENLLPTGVPVIKAIWVPDSVDTVDIARRADHVDLPLLDSGAGGTGELFDWSLVSKWL--K  143

Query  703  DGLRVILAGGLDTSNVVDTIRKLG------DSGHKVVGVDVSSGVESDGSQDPAKIRAFV  756
             GL+VILAGGL+  NVV+ I+  G       SG           VE++G +D  KIR FV
Sbjct  144  SGLKVILAGGLNPDNVVEAIKTPGVIGVDVSSG-----------VETNGIKDLNKIRKFV  192

Query  757  Q  757
            Q
Sbjct  193  Q  193



Lambda      K        H        a         alpha
   0.316    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 974951840


Query= TCONS_00002230

Length=1385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463110 pfam10487, Nup188, Nucleoporin subcomplex protein bind...  234     5e-64


>CDD:463110 pfam10487, Nup188, Nucleoporin subcomplex protein binding to 
Pom34.  This is one of the many peptides that make up the nucleoporin 
complex (NPC), and is found across eukaryotes. The 
Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of 
at least six that make up the NPC, and as such is symmetrically 
localized on both faces of the NPC at the nuclear end, 
being integrally bound to the C-terminus of Pom34p.
Length=925

 Score = 234 bits (599),  Expect = 5e-64, Method: Composition-based stats.
 Identities = 154/625 (25%), Positives = 277/625 (44%), Gaps = 86/625 (14%)

Query  531   YVEYSPEIVGSVLAILEGPPTKLLCSSQSLSVATDPRWIFMNDDFLMDELFHLARSRFPY  590
             ++  +PEI  ++  +L+  P          S+       F N+    ++   +AR++FP 
Sbjct  375   FISLTPEISDAIKEVLKNAPN---------SIVEK---FFTNEAT--EKALIIARAKFPL  420

Query  591   ETVPFLKLCRAL-ISKDMVNEEGIPQILSEMENMDTFTQIVPLEFQGYETIREDENANLV  649
                P   L     I+ +  N E        ++ + ++T++  L         +DEN +L+
Sbjct  421   LLEPLSPLINLASINGNFANFE--------LKELKSYTEVFKLGEFDDLYDIDDENTDLI  472

Query  650   TLTQPLAI---FESSTARQIMDHDPSNALVVTSSSHVPSSTLGQVISEAKP--AVIMWYH  704
              L Q L +   FES+              +      +P  T  +++  A P   ++ + +
Sbjct  473   KLKQDLLVYPPFESN----------KKLSLP-----LPKGTKAKILPSANPDEDLVTFLY  517

Query  705   EYSCLSYLGSYLEEWNENGGFSSGVEEDNVAEIIGLMADLLVAAWVQPTPNEASSGAKRI  764
             +Y+  + LG  L+  ++        + + + +I+    DLL          E S   K I
Sbjct  518   KYNGWALLGRVLQNLSKVYSTIDPEKVELIVDIL----DLLTKVVSSDNSIEDS---KEI  570

Query  765   LEVASDGLARKSDIISLVFDIFERILHNIGPRAGLDSKVESVIACLRFIRALTMVLPGRV  824
             LE  S      SDII ++F +FE+ LH+          V+ +++CL  + +L    P RV
Sbjct  571   LESMS-AYTDDSDIIEVIFRLFEQALHS--------RNVDLLVSCLNLLTSLVPNFPQRV  621

Query  825   WPLLARSSLLGSDGKGGVMTAIVSATEVTSGDYPFLLECVKLFQDVVDDAASRAMVRKCP  884
             W  L++S LL  +GK G+   I+ + E+ +G+Y F +  +KL   +V +  S        
Sbjct  622   WSYLSKSDLLPRNGKEGLAGTILGSIEMVNGEYSFTISLIKLANTLVKNCLS--------  673

Query  885   NNLSGKMTAASEWTSGVPTHIMRGILLNFVRTMVEVFNSNIDWRFNAPEQRLEINTTLAK  944
                           +  P      IL   +  ++EVF S   WR+N+  QR EI   L  
Sbjct  674   ------------LDNDFPVKSKSEILPKLIFHLIEVFESFQFWRYNSSYQRFEIGVLLLD  721

Query  945   TFERMIYYTYGTNDATKLDSKVTGVFSSSATYLLDV-LRPQSRADLPFNPILRLIVDGLQ  1003
              F +++Y  YG +  +    K+T VFS +A  +L + L   S       P+L +I  G  
Sbjct  722   LFSKILYSVYGIDPDSPPKKKITNVFSLAAECILSLFLTSDSDDSRAGQPLLNIIGSGSD  781

Query  1004  TPATLHLRYLV--LMEKQVRSTLELTTRLLEAARYLEQPTSLLEDQLFKASPVLVKLYSL  1061
             T  +  L        ++ ++ +   +  L+     L  P S LE  LF+ SP LV +Y+ 
Sbjct  782   TLDSYELSDSSGFWYDQWIQCSFSFSNLLISIRSSLNLPPSPLEKALFQKSPKLVDIYAS  841

Query  1062  LDAYRLPVILLFEILISGAALDSANEPPSLVGHLGAESSCLFLD-VLSQFDKPLSDQKLQ  1120
              ++ +  +I L   L++       +E PSL+ HLG + S + L  +LS  D P+ D KL+
Sbjct  842   YESLKKDIIDLLTSLVNA---PWPDEYPSLLSHLGRDHSQVLLHSLLSDLDNPIDDYKLK  898

Query  1121  LAVWHFLSTIVSKRQQWLAVYILTG  1145
             ++++ F S ++  +Q+ L++  LTG
Sbjct  899   ISLYEFFSAVMEGKQEGLSILFLTG  923



Lambda      K        H        a         alpha
   0.319    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0728    0.140     1.90     42.6     43.6 

Effective search space used: 1771684200


Query= TCONS_00002231

Length=1815
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436451 pfam18378, Nup188_C, Nuclear pore protein NUP188 C-ter...  580     0.0  
CDD:463110 pfam10487, Nup188, Nucleoporin subcomplex protein bind...  236     2e-64


>CDD:436451 pfam18378, Nup188_C, Nuclear pore protein NUP188 C-terminal domain. 
 This is C-terminal domain of Nup188. It is a right-handed 
arc-shaped superhelical structure built from 19 helices 
that form 6 helical repeats, which are stacked in regular 
order. The first helical pair (alpha1 and alpha2) forms a HEAT 
repeat followed by 5 ARM repeats.
Length=370

 Score = 580 bits (1497),  Expect = 0.0, Method: Composition-based stats.
 Identities = 198/377 (53%), Positives = 253/377 (67%), Gaps = 18/377 (5%)

Query  1445  LLRVVWDALRTRRATYEEALVNDDAEYYRSVLNVLFLALQCHLDSNPRTTPDTSSRI-AE  1503
             LL  VWD +R  R  +E AL NDD EYYR++L VLFLAL+ HLD+  R  P+  ++  + 
Sbjct  1     LLSTVWDTIRAVREPFERALANDDIEYYRTLLKVLFLALRFHLDAPSRAEPEAVAKSKSS  60

Query  1504  IPSDLTLVIEIVKTVVAHGFRSLTTYLHDQPDKCEPKDFALLTAILQTSLQIKNADRLYE  1563
               S   +V+EI+  VVA GFRSL + LHD P    P+DFALLTAILQ  L++   D+   
Sbjct  61    SVSVTQIVLEILDRVVAQGFRSLVSLLHDDPASVSPEDFALLTAILQACLRVPGIDQSQT  120

Query  1564  HIVYHIEDNNTARHAMSLFSWADQLAVSGDPVYGELSILFLVKLSTLPMLAEHLAVEAVL  1623
              I+  +  N+T R+A SLFSW+DQLA+ GDPVYGELSILFL++LSTLPMLAE LAV+ VL
Sbjct  121   QILNIMASNDTVRYATSLFSWSDQLAIDGDPVYGELSILFLLELSTLPMLAEQLAVDGVL  180

Query  1624  TRLSTCRLTNILQQPRGFGPFDAVP---RLYTIWTAGFLPLCLNLLYHVLRT-APEVAAF  1679
             ++LS+  LTN L++P   GPFD  P   R Y+IWT G LPLCLNLL  V  T APEVAAF
Sbjct  181   SQLSSANLTNYLRRP-NVGPFDDPPGAQRCYSIWTKGILPLCLNLLDAVGATIAPEVAAF  239

Query  1680  LNQFEGQLKRAAESFVADR------SGSPSRRICLSMASEAYSLALISFILNRFREAGPS  1733
             LNQF   L+R+ + F A        S S  R I LS ASEA+SLAL++ IL   RE    
Sbjct  240   LNQFPHLLRRSVDRFEAPGASRTSPSRSAPRYITLSAASEAHSLALLTRILEALRE----  295

Query  1734  AGVDAQSIQDLKWDKTQVKEDIEELLERRQSLRARIVATSEKEVELARQKPVNSASGAEN  1793
               V+A+ I +++WD   V E++E  L  R+ LR RIV   E+E+E  RQKP++++SGAEN
Sbjct  296   --VNARDIPEVEWDAAGVLENVEFWLSSRRLLRERIVPLGERELEWRRQKPLDASSGAEN  353

Query  1794  RLEEKIVTELQAALVCL  1810
             RLEEK+V EL+A   CL
Sbjct  354   RLEEKVVAELEAVRDCL  370


>CDD:463110 pfam10487, Nup188, Nucleoporin subcomplex protein binding to 
Pom34.  This is one of the many peptides that make up the nucleoporin 
complex (NPC), and is found across eukaryotes. The 
Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of 
at least six that make up the NPC, and as such is symmetrically 
localized on both faces of the NPC at the nuclear end, 
being integrally bound to the C-terminus of Pom34p.
Length=925

 Score = 236 bits (605),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 154/625 (25%), Positives = 277/625 (44%), Gaps = 86/625 (14%)

Query  531   YVEYSPEIVGSVLAILEGPPTKLLCSSQSLSVATDPRWIFMNDDFLMDELFHLARSRFPY  590
             ++  +PEI  ++  +L+  P          S+       F N+    ++   +AR++FP 
Sbjct  375   FISLTPEISDAIKEVLKNAPN---------SIVEK---FFTNEAT--EKALIIARAKFPL  420

Query  591   ETVPFLKLCRAL-ISKDMVNEEGIPQILSEMENMDTFTQIVPLEFQGYETIREDENANLV  649
                P   L     I+ +  N E        ++ + ++T++  L         +DEN +L+
Sbjct  421   LLEPLSPLINLASINGNFANFE--------LKELKSYTEVFKLGEFDDLYDIDDENTDLI  472

Query  650   TLTQPLAI---FESSTARQIMDHDPSNALVVTSSSHVPSSTLGQVISEAKP--AVIMWYH  704
              L Q L +   FES+              +      +P  T  +++  A P   ++ + +
Sbjct  473   KLKQDLLVYPPFESN----------KKLSLP-----LPKGTKAKILPSANPDEDLVTFLY  517

Query  705   EYSCLSYLGSYLEEWNENGGFSSGVEEDNVAEIIGLMADLLVAAWVQPTPNEASSGAKRI  764
             +Y+  + LG  L+  ++        + + + +I+    DLL          E S   K I
Sbjct  518   KYNGWALLGRVLQNLSKVYSTIDPEKVELIVDIL----DLLTKVVSSDNSIEDS---KEI  570

Query  765   LEVASDGLARKSDIISLVFDIFERILHNIGPRAGLDSKVESVIACLRFIRALTMVLPGRV  824
             LE  S      SDII ++F +FE+ LH+          V+ +++CL  + +L    P RV
Sbjct  571   LESMS-AYTDDSDIIEVIFRLFEQALHS--------RNVDLLVSCLNLLTSLVPNFPQRV  621

Query  825   WPLLARSSLLGSDGKGGVMTAIVSATEVTSGDYPFLLECVKLFQDVVDDAASRAMVRKCP  884
             W  L++S LL  +GK G+   I+ + E+ +G+Y F +  +KL   +V +  S        
Sbjct  622   WSYLSKSDLLPRNGKEGLAGTILGSIEMVNGEYSFTISLIKLANTLVKNCLS--------  673

Query  885   NNLSGKMTAASEWTSGVPTHIMRGILLNFVRTMVEVFNSNIDWRFNAPEQRLEINTTLAK  944
                           +  P      IL   +  ++EVF S   WR+N+  QR EI   L  
Sbjct  674   ------------LDNDFPVKSKSEILPKLIFHLIEVFESFQFWRYNSSYQRFEIGVLLLD  721

Query  945   TFERMIYYTYGTNDATKLDSKVTGVFSSSATYLLDV-LRPQSRADLPFNPILRLIVDGLQ  1003
              F +++Y  YG +  +    K+T VFS +A  +L + L   S       P+L +I  G  
Sbjct  722   LFSKILYSVYGIDPDSPPKKKITNVFSLAAECILSLFLTSDSDDSRAGQPLLNIIGSGSD  781

Query  1004  TPATLHLRYLV--LMEKQVRSTLELTTRLLEAARYLEQPTSLLEDQLFKASPVLVKLYSL  1061
             T  +  L        ++ ++ +   +  L+     L  P S LE  LF+ SP LV +Y+ 
Sbjct  782   TLDSYELSDSSGFWYDQWIQCSFSFSNLLISIRSSLNLPPSPLEKALFQKSPKLVDIYAS  841

Query  1062  LDAYRLPVILLFEILISGAALDSANEPPSLVGHLGAESSCLFLD-VLSQFDKPLSDQKLQ  1120
              ++ +  +I L   L++       +E PSL+ HLG + S + L  +LS  D P+ D KL+
Sbjct  842   YESLKKDIIDLLTSLVNA---PWPDEYPSLLSHLGRDHSQVLLHSLLSDLDNPIDDYKLK  898

Query  1121  LAVWHFLSTIVSKRQQWLAVYILTG  1145
             ++++ F S ++  +Q+ L++  LTG
Sbjct  899   ISLYEFFSAVMEGKQEGLSILFLTG  923



Lambda      K        H        a         alpha
   0.319    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2293510660


Query= TCONS_00002232

Length=1027
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463110 pfam10487, Nup188, Nucleoporin subcomplex protein bind...  232     3e-64


>CDD:463110 pfam10487, Nup188, Nucleoporin subcomplex protein binding to 
Pom34.  This is one of the many peptides that make up the nucleoporin 
complex (NPC), and is found across eukaryotes. The 
Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of 
at least six that make up the NPC, and as such is symmetrically 
localized on both faces of the NPC at the nuclear end, 
being integrally bound to the C-terminus of Pom34p.
Length=925

 Score = 232 bits (595),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 148/586 (25%), Positives = 263/586 (45%), Gaps = 74/586 (13%)

Query  212  FMNDDFLMDELFHLARSRFPYETVPFLKLCRAL-ISKDMVNEEGIPQILSEMENMDTFTQ  270
            F N+    ++   +AR++FP    P   L     I+ +  N E        ++ + ++T+
Sbjct  402  FTNEAT--EKALIIARAKFPLLLEPLSPLINLASINGNFANFE--------LKELKSYTE  451

Query  271  IVPLEFQGYETIREDENANLVTLTQPLAI---FESSTARQIMDHDPSNALVVTSSSHVPS  327
            +  L         +DEN +L+ L Q L +   FES+              +      +P 
Sbjct  452  VFKLGEFDDLYDIDDENTDLIKLKQDLLVYPPFESN----------KKLSLP-----LPK  496

Query  328  STLGQVISEAKP--AVIMWYHEYSCLSYLGSYLEEWNENGGFSSGVEEDNVAEIIGLMAD  385
             T  +++  A P   ++ + ++Y+  + LG  L+  ++        + + + +I+    D
Sbjct  497  GTKAKILPSANPDEDLVTFLYKYNGWALLGRVLQNLSKVYSTIDPEKVELIVDIL----D  552

Query  386  LLVAAWVQPTPNEASSGAKRILEVASDGLARKSDIISLVFDIFERILHNIGPRAGLDSKV  445
            LL          E S   K ILE  S      SDII ++F +FE+ LH+          V
Sbjct  553  LLTKVVSSDNSIEDS---KEILESMS-AYTDDSDIIEVIFRLFEQALHS--------RNV  600

Query  446  ESVIACLRFIRALTMVLPGRVWPLLARSSLLGSDGKGGVMTAIVSATEVTSGDYPFLLEC  505
            + +++CL  + +L    P RVW  L++S LL  +GK G+   I+ + E+ +G+Y F +  
Sbjct  601  DLLVSCLNLLTSLVPNFPQRVWSYLSKSDLLPRNGKEGLAGTILGSIEMVNGEYSFTISL  660

Query  506  VKLFQDVVDDAASRAMVRKCPNNLSGKMTAASEWTSGVPTHIMRGILLNFVRTMVEVFNS  565
            +KL   +V +  S                      +  P      IL   +  ++EVF S
Sbjct  661  IKLANTLVKNCLS--------------------LDNDFPVKSKSEILPKLIFHLIEVFES  700

Query  566  NIDWRFNAPEQRLEINTTLAKTFERMIYYTYGTNDATKLDSKVTGVFSSSATYLLDV-LR  624
               WR+N+  QR EI   L   F +++Y  YG +  +    K+T VFS +A  +L + L 
Sbjct  701  FQFWRYNSSYQRFEIGVLLLDLFSKILYSVYGIDPDSPPKKKITNVFSLAAECILSLFLT  760

Query  625  PQSRADLPFNPILRLIVDGLQTPATLHLRYLV--LMEKQVRSTLELTTRLLEAARYLEQP  682
              S       P+L +I  G  T  +  L        ++ ++ +   +  L+     L  P
Sbjct  761  SDSDDSRAGQPLLNIIGSGSDTLDSYELSDSSGFWYDQWIQCSFSFSNLLISIRSSLNLP  820

Query  683  TSLLEDQLFKASPVLVKLYSLLDAYRLPVILLFEILISGAALDSANEPPSLVGHLGAESS  742
             S LE  LF+ SP LV +Y+  ++ +  +I L   L++       +E PSL+ HLG + S
Sbjct  821  PSPLEKALFQKSPKLVDIYASYESLKKDIIDLLTSLVNA---PWPDEYPSLLSHLGRDHS  877

Query  743  CLFLD-VLSQFDKPLSDQKLQLAVWHFLSTIVSKRQQWLAVYILTG  787
             + L  +LS  D P+ D KL+++++ F S ++  +Q+ L++  LTG
Sbjct  878  QVLLHSLLSDLDNPIDDYKLKISLYEFFSAVMEGKQEGLSILFLTG  923



Lambda      K        H        a         alpha
   0.319    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1318180556


Query= TCONS_00007595

Length=562
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 326     2e-107
CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-termina...  77.6    2e-18 


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 326 bits (838),  Expect = 2e-107, Method: Composition-based stats.
 Identities = 125/416 (30%), Positives = 188/416 (45%), Gaps = 25/416 (6%)

Query  46   FTTHDFRLWSQRFAAGLRKAGLQPGDRVLLFSGNDLFFPVVFMGIIMAGGIFTGANPTFV  105
             T  +    + R AAGLR  G+  GDRV +   N   + V F+  + AG ++   NP   
Sbjct  22   LTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFLACLKAGAVYVPLNPRLP  81

Query  106  ARELAFQLQDSGASFLLCADVSLDVGIEAAQIAGLSRDRVFVFNNAIFDGQGEGRKGCRY  165
            A ELA+ L+DSGA  L+  D      +  A         V V      D     ++    
Sbjct  82   AEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVL-----DRDPVLKEEPLP  136

Query  166  WGQLVASVEEGREFVWDELSTPEEADRTLALNYSSGTTGRPKGVEITHKNYVANMLQYNY  225
                    E     V      P + D    + Y+SGTTG+PKGV +TH+N VAN+L    
Sbjct  137  E-------EAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKR  189

Query  226  MFYLNPDWKERSARARWLCFLPMYHAMAQNIFIAAALSREVPVYIMPKF---DFIKMLEY  282
            +    P         R L  LP++H    ++ +   L     V + P F   D   +LE 
Sbjct  190  V---RPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLEL  246

Query  283  VEKFRISDLILVPPVVVALAKHPAVKSGKYVLSSVETIGSGAAPLGREVCEEVEALWPPG  342
            +E+++++ L  VP ++  L +  A K  + +LSS+  + SG APL  E+      L+   
Sbjct  247  IERYKVTVLYGVPTLLNMLLEAGAPK--RALLSSLRLVLSGGAPLPPELARRFRELFGGA  304

Query  343  RINVKQGWGMTETT--CSILGWNPTEKSYSASVGELNANCEAKIMADDGVTEYGHNQRGE  400
               +  G+G+TETT   +       +     SVG      E KI+ D+        + GE
Sbjct  305  ---LVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPGEPGE  361

Query  401  LWVRAPNIMKGYWKNPQATEETKTADGWLKTGDIAYVDDNGRFHVVDRKKELIKVK  456
            L VR P +MKGY  +P+ T E    DGW +TGD+   D++G   +V RKK+ IK+ 
Sbjct  362  LCVRGPGVMKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-terminal domain. 
 This is a small domain that is found C terminal to pfam00501. 
It has a central beta sheet core that is flanked by alpha 
helices.
Length=76

 Score = 77.6 bits (192),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 32/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (3%)

Query  464  ELEALLLEHPAVADVAVIGVQVNDD-ERPRAYIVLKPGHNAAANDIVAFMDGKVSAIKRI  522
            E+E+ L+ HPAVA+ AV+GV      E P A++VLKPG      ++VA +  ++      
Sbjct  1    EVESALVSHPAVAEAAVVGVPDELKGEAPVAFVVLKPGVELLEEELVAHVREELGPYAVP  60

Query  523  TGGVVFVDAIPKNPSGK  539
               VVFVD +PK  SGK
Sbjct  61   -KEVVFVDELPKTRSGK  76



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 702381160


Query= TCONS_00007597

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 217     1e-67


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 217 bits (554),  Expect = 1e-67, Method: Composition-based stats.
 Identities = 89/312 (29%), Positives = 137/312 (44%), Gaps = 23/312 (7%)

Query  46   FTTHDFRLWSQRFAAGLRKAGLQPGDRVLLFSGNDLFFPVVFMGIIMAGGIFTGANPTFV  105
             T  +    + R AAGLR  G+  GDRV +   N   + V F+  + AG ++   NP   
Sbjct  22   LTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFLACLKAGAVYVPLNPRLP  81

Query  106  ARELAFQLQDSGASFLLCADVSLDVGIEAAQIAGLSRDRVFVFNNAIFDGQGEGRKGCRY  165
            A ELA+ L+DSGA  L+  D      +  A         V V      D     ++    
Sbjct  82   AEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLV-----LDRDPVLKEEPLP  136

Query  166  WGQLVASVEEGREFVWDELSTPEEADRTLALNYSSGTTGRPKGVEITHKNYVANMLQYNY  225
                    E     V      P + D    + Y+SGTTG+PKGV +TH+N VAN+L    
Sbjct  137  E-------EAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKR  189

Query  226  MFYLNPDWKERSARARWLCFLPMYHAMAQNIFIAAALSREVPVYIMPKF---DFIKMLEY  282
            +    P         R L  LP++H    ++ +   L     V + P F   D   +LE 
Sbjct  190  V---RPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLEL  246

Query  283  VEKFRISDLILVPPVVVALAKHPAVKSGKYVLSSVETIGSGAAPLGREVCEEVEALWPPG  342
            +E+++++ L  VP ++  L +  A K  + +LSS+  + SG APL  E+      L+   
Sbjct  247  IERYKVTVLYGVPTLLNMLLEAGAPK--RALLSSLRLVLSGGAPLPPELARRFRELFGGA  304

Query  343  RINVKQGWGMTE  354
               +  G+G+TE
Sbjct  305  ---LVNGYGLTE  313



Lambda      K        H        a         alpha
   0.324    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00007596

Length=562
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 326     2e-107
CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-termina...  77.6    2e-18 


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 326 bits (838),  Expect = 2e-107, Method: Composition-based stats.
 Identities = 125/416 (30%), Positives = 188/416 (45%), Gaps = 25/416 (6%)

Query  46   FTTHDFRLWSQRFAAGLRKAGLQPGDRVLLFSGNDLFFPVVFMGIIMAGGIFTGANPTFV  105
             T  +    + R AAGLR  G+  GDRV +   N   + V F+  + AG ++   NP   
Sbjct  22   LTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFLACLKAGAVYVPLNPRLP  81

Query  106  ARELAFQLQDSGASFLLCADVSLDVGIEAAQIAGLSRDRVFVFNNAIFDGQGEGRKGCRY  165
            A ELA+ L+DSGA  L+  D      +  A         V V      D     ++    
Sbjct  82   AEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVL-----DRDPVLKEEPLP  136

Query  166  WGQLVASVEEGREFVWDELSTPEEADRTLALNYSSGTTGRPKGVEITHKNYVANMLQYNY  225
                    E     V      P + D    + Y+SGTTG+PKGV +TH+N VAN+L    
Sbjct  137  E-------EAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKR  189

Query  226  MFYLNPDWKERSARARWLCFLPMYHAMAQNIFIAAALSREVPVYIMPKF---DFIKMLEY  282
            +    P         R L  LP++H    ++ +   L     V + P F   D   +LE 
Sbjct  190  V---RPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLEL  246

Query  283  VEKFRISDLILVPPVVVALAKHPAVKSGKYVLSSVETIGSGAAPLGREVCEEVEALWPPG  342
            +E+++++ L  VP ++  L +  A K  + +LSS+  + SG APL  E+      L+   
Sbjct  247  IERYKVTVLYGVPTLLNMLLEAGAPK--RALLSSLRLVLSGGAPLPPELARRFRELFGGA  304

Query  343  RINVKQGWGMTETT--CSILGWNPTEKSYSASVGELNANCEAKIMADDGVTEYGHNQRGE  400
               +  G+G+TETT   +       +     SVG      E KI+ D+        + GE
Sbjct  305  ---LVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPGEPGE  361

Query  401  LWVRAPNIMKGYWKNPQATEETKTADGWLKTGDIAYVDDNGRFHVVDRKKELIKVK  456
            L VR P +MKGY  +P+ T E    DGW +TGD+   D++G   +V RKK+ IK+ 
Sbjct  362  LCVRGPGVMKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-terminal domain. 
 This is a small domain that is found C terminal to pfam00501. 
It has a central beta sheet core that is flanked by alpha 
helices.
Length=76

 Score = 77.6 bits (192),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 32/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (3%)

Query  464  ELEALLLEHPAVADVAVIGVQVNDD-ERPRAYIVLKPGHNAAANDIVAFMDGKVSAIKRI  522
            E+E+ L+ HPAVA+ AV+GV      E P A++VLKPG      ++VA +  ++      
Sbjct  1    EVESALVSHPAVAEAAVVGVPDELKGEAPVAFVVLKPGVELLEEELVAHVREELGPYAVP  60

Query  523  TGGVVFVDAIPKNPSGK  539
               VVFVD +PK  SGK
Sbjct  61   -KEVVFVDELPKTRSGK  76



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 702381160


Query= TCONS_00002233

Length=562
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 326     2e-107
CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-termina...  77.6    2e-18 


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 326 bits (838),  Expect = 2e-107, Method: Composition-based stats.
 Identities = 125/416 (30%), Positives = 188/416 (45%), Gaps = 25/416 (6%)

Query  46   FTTHDFRLWSQRFAAGLRKAGLQPGDRVLLFSGNDLFFPVVFMGIIMAGGIFTGANPTFV  105
             T  +    + R AAGLR  G+  GDRV +   N   + V F+  + AG ++   NP   
Sbjct  22   LTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFLACLKAGAVYVPLNPRLP  81

Query  106  ARELAFQLQDSGASFLLCADVSLDVGIEAAQIAGLSRDRVFVFNNAIFDGQGEGRKGCRY  165
            A ELA+ L+DSGA  L+  D      +  A         V V      D     ++    
Sbjct  82   AEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVL-----DRDPVLKEEPLP  136

Query  166  WGQLVASVEEGREFVWDELSTPEEADRTLALNYSSGTTGRPKGVEITHKNYVANMLQYNY  225
                    E     V      P + D    + Y+SGTTG+PKGV +TH+N VAN+L    
Sbjct  137  E-------EAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKR  189

Query  226  MFYLNPDWKERSARARWLCFLPMYHAMAQNIFIAAALSREVPVYIMPKF---DFIKMLEY  282
            +    P         R L  LP++H    ++ +   L     V + P F   D   +LE 
Sbjct  190  V---RPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLEL  246

Query  283  VEKFRISDLILVPPVVVALAKHPAVKSGKYVLSSVETIGSGAAPLGREVCEEVEALWPPG  342
            +E+++++ L  VP ++  L +  A K  + +LSS+  + SG APL  E+      L+   
Sbjct  247  IERYKVTVLYGVPTLLNMLLEAGAPK--RALLSSLRLVLSGGAPLPPELARRFRELFGGA  304

Query  343  RINVKQGWGMTETT--CSILGWNPTEKSYSASVGELNANCEAKIMADDGVTEYGHNQRGE  400
               +  G+G+TETT   +       +     SVG      E KI+ D+        + GE
Sbjct  305  ---LVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPGEPGE  361

Query  401  LWVRAPNIMKGYWKNPQATEETKTADGWLKTGDIAYVDDNGRFHVVDRKKELIKVK  456
            L VR P +MKGY  +P+ T E    DGW +TGD+   D++G   +V RKK+ IK+ 
Sbjct  362  LCVRGPGVMKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-terminal domain. 
 This is a small domain that is found C terminal to pfam00501. 
It has a central beta sheet core that is flanked by alpha 
helices.
Length=76

 Score = 77.6 bits (192),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 32/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (3%)

Query  464  ELEALLLEHPAVADVAVIGVQVNDD-ERPRAYIVLKPGHNAAANDIVAFMDGKVSAIKRI  522
            E+E+ L+ HPAVA+ AV+GV      E P A++VLKPG      ++VA +  ++      
Sbjct  1    EVESALVSHPAVAEAAVVGVPDELKGEAPVAFVVLKPGVELLEEELVAHVREELGPYAVP  60

Query  523  TGGVVFVDAIPKNPSGK  539
               VVFVD +PK  SGK
Sbjct  61   -KEVVFVDELPKTRSGK  76



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 702381160


Query= TCONS_00002234

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 217     1e-67


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 217 bits (554),  Expect = 1e-67, Method: Composition-based stats.
 Identities = 89/312 (29%), Positives = 137/312 (44%), Gaps = 23/312 (7%)

Query  46   FTTHDFRLWSQRFAAGLRKAGLQPGDRVLLFSGNDLFFPVVFMGIIMAGGIFTGANPTFV  105
             T  +    + R AAGLR  G+  GDRV +   N   + V F+  + AG ++   NP   
Sbjct  22   LTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFLACLKAGAVYVPLNPRLP  81

Query  106  ARELAFQLQDSGASFLLCADVSLDVGIEAAQIAGLSRDRVFVFNNAIFDGQGEGRKGCRY  165
            A ELA+ L+DSGA  L+  D      +  A         V V      D     ++    
Sbjct  82   AEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLV-----LDRDPVLKEEPLP  136

Query  166  WGQLVASVEEGREFVWDELSTPEEADRTLALNYSSGTTGRPKGVEITHKNYVANMLQYNY  225
                    E     V      P + D    + Y+SGTTG+PKGV +TH+N VAN+L    
Sbjct  137  E-------EAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKR  189

Query  226  MFYLNPDWKERSARARWLCFLPMYHAMAQNIFIAAALSREVPVYIMPKF---DFIKMLEY  282
            +    P         R L  LP++H    ++ +   L     V + P F   D   +LE 
Sbjct  190  V---RPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLEL  246

Query  283  VEKFRISDLILVPPVVVALAKHPAVKSGKYVLSSVETIGSGAAPLGREVCEEVEALWPPG  342
            +E+++++ L  VP ++  L +  A K  + +LSS+  + SG APL  E+      L+   
Sbjct  247  IERYKVTVLYGVPTLLNMLLEAGAPK--RALLSSLRLVLSGGAPLPPELARRFRELFGGA  304

Query  343  RINVKQGWGMTE  354
               +  G+G+TE
Sbjct  305  ---LVNGYGLTE  313



Lambda      K        H        a         alpha
   0.324    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00002236

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 326     2e-107
CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-termina...  76.0    1e-17 


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 326 bits (838),  Expect = 2e-107, Method: Composition-based stats.
 Identities = 125/416 (30%), Positives = 188/416 (45%), Gaps = 25/416 (6%)

Query  46   FTTHDFRLWSQRFAAGLRKAGLQPGDRVLLFSGNDLFFPVVFMGIIMAGGIFTGANPTFV  105
             T  +    + R AAGLR  G+  GDRV +   N   + V F+  + AG ++   NP   
Sbjct  22   LTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFLACLKAGAVYVPLNPRLP  81

Query  106  ARELAFQLQDSGASFLLCADVSLDVGIEAAQIAGLSRDRVFVFNNAIFDGQGEGRKGCRY  165
            A ELA+ L+DSGA  L+  D      +  A         V V      D     ++    
Sbjct  82   AEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVL-----DRDPVLKEEPLP  136

Query  166  WGQLVASVEEGREFVWDELSTPEEADRTLALNYSSGTTGRPKGVEITHKNYVANMLQYNY  225
                    E     V      P + D    + Y+SGTTG+PKGV +TH+N VAN+L    
Sbjct  137  E-------EAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKR  189

Query  226  MFYLNPDWKERSARARWLCFLPMYHAMAQNIFIAAALSREVPVYIMPKF---DFIKMLEY  282
            +    P         R L  LP++H    ++ +   L     V + P F   D   +LE 
Sbjct  190  V---RPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLEL  246

Query  283  VEKFRISDLILVPPVVVALAKHPAVKSGKYVLSSVETIGSGAAPLGREVCEEVEALWPPG  342
            +E+++++ L  VP ++  L +  A K  + +LSS+  + SG APL  E+      L+   
Sbjct  247  IERYKVTVLYGVPTLLNMLLEAGAPK--RALLSSLRLVLSGGAPLPPELARRFRELFGGA  304

Query  343  RINVKQGWGMTETT--CSILGWNPTEKSYSASVGELNANCEAKIMADDGVTEYGHNQRGE  400
               +  G+G+TETT   +       +     SVG      E KI+ D+        + GE
Sbjct  305  ---LVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPGEPGE  361

Query  401  LWVRAPNIMKGYWKNPQATEETKTADGWLKTGDIAYVDDNGRFHVVDRKKELIKVK  456
            L VR P +MKGY  +P+ T E    DGW +TGD+   D++G   +V RKK+ IK+ 
Sbjct  362  LCVRGPGVMKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-terminal domain. 
 This is a small domain that is found C terminal to pfam00501. 
It has a central beta sheet core that is flanked by alpha 
helices.
Length=76

 Score = 76.0 bits (188),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 46/80 (58%), Gaps = 4/80 (5%)

Query  464  ELEALLLEHPAVADVAVIGVQVYLNRNDDERPRAYIVLKPGHNAAANDIVAFMDGKVSAI  523
            E+E+ L+ HPAVA+ AV+GV    +    E P A++VLKPG      ++VA +  ++   
Sbjct  1    EVESALVSHPAVAEAAVVGVP---DELKGEAPVAFVVLKPGVELLEEELVAHVREELGPY  57

Query  524  KRITGGVVFVDAIPKNPSGK  543
                  VVFVD +PK  SGK
Sbjct  58   AVP-KEVVFVDELPKTRSGK  76



Lambda      K        H        a         alpha
   0.320    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00002235

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 326     2e-108


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 326 bits (837),  Expect = 2e-108, Method: Composition-based stats.
 Identities = 125/416 (30%), Positives = 188/416 (45%), Gaps = 25/416 (6%)

Query  46   FTTHDFRLWSQRFAAGLRKAGLQPGDRVLLFSGNDLFFPVVFMGIIMAGGIFTGANPTFV  105
             T  +    + R AAGLR  G+  GDRV +   N   + V F+  + AG ++   NP   
Sbjct  22   LTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFLACLKAGAVYVPLNPRLP  81

Query  106  ARELAFQLQDSGASFLLCADVSLDVGIEAAQIAGLSRDRVFVFNNAIFDGQGEGRKGCRY  165
            A ELA+ L+DSGA  L+  D      +  A         V V      D     ++    
Sbjct  82   AEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVL-----DRDPVLKEEPLP  136

Query  166  WGQLVASVEEGREFVWDELSTPEEADRTLALNYSSGTTGRPKGVEITHKNYVANMLQYNY  225
                    E     V      P + D    + Y+SGTTG+PKGV +TH+N VAN+L    
Sbjct  137  E-------EAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKR  189

Query  226  MFYLNPDWKERSARARWLCFLPMYHAMAQNIFIAAALSREVPVYIMPKF---DFIKMLEY  282
            +    P         R L  LP++H    ++ +   L     V + P F   D   +LE 
Sbjct  190  V---RPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLEL  246

Query  283  VEKFRISDLILVPPVVVALAKHPAVKSGKYVLSSVETIGSGAAPLGREVCEEVEALWPPG  342
            +E+++++ L  VP ++  L +  A K  + +LSS+  + SG APL  E+      L+   
Sbjct  247  IERYKVTVLYGVPTLLNMLLEAGAPK--RALLSSLRLVLSGGAPLPPELARRFRELFGGA  304

Query  343  RINVKQGWGMTETT--CSILGWNPTEKSYSASVGELNANCEAKIMADDGVTEYGHNQRGE  400
               +  G+G+TETT   +       +     SVG      E KI+ D+        + GE
Sbjct  305  ---LVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPGEPGE  361

Query  401  LWVRAPNIMKGYWKNPQATEETKTADGWLKTGDIAYVDDNGRFHVVDRKKELIKVK  456
            L VR P +MKGY  +P+ T E    DGW +TGD+   D++G   +V RKK+ IK+ 
Sbjct  362  LCVRGPGVMKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417



Lambda      K        H        a         alpha
   0.321    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00007599

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 217     1e-67


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 217 bits (554),  Expect = 1e-67, Method: Composition-based stats.
 Identities = 89/312 (29%), Positives = 137/312 (44%), Gaps = 23/312 (7%)

Query  46   FTTHDFRLWSQRFAAGLRKAGLQPGDRVLLFSGNDLFFPVVFMGIIMAGGIFTGANPTFV  105
             T  +    + R AAGLR  G+  GDRV +   N   + V F+  + AG ++   NP   
Sbjct  22   LTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFLACLKAGAVYVPLNPRLP  81

Query  106  ARELAFQLQDSGASFLLCADVSLDVGIEAAQIAGLSRDRVFVFNNAIFDGQGEGRKGCRY  165
            A ELA+ L+DSGA  L+  D      +  A         V V      D     ++    
Sbjct  82   AEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLV-----LDRDPVLKEEPLP  136

Query  166  WGQLVASVEEGREFVWDELSTPEEADRTLALNYSSGTTGRPKGVEITHKNYVANMLQYNY  225
                    E     V      P + D    + Y+SGTTG+PKGV +TH+N VAN+L    
Sbjct  137  E-------EAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKR  189

Query  226  MFYLNPDWKERSARARWLCFLPMYHAMAQNIFIAAALSREVPVYIMPKF---DFIKMLEY  282
            +    P         R L  LP++H    ++ +   L     V + P F   D   +LE 
Sbjct  190  V---RPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLEL  246

Query  283  VEKFRISDLILVPPVVVALAKHPAVKSGKYVLSSVETIGSGAAPLGREVCEEVEALWPPG  342
            +E+++++ L  VP ++  L +  A K  + +LSS+  + SG APL  E+      L+   
Sbjct  247  IERYKVTVLYGVPTLLNMLLEAGAPK--RALLSSLRLVLSGGAPLPPELARRFRELFGGA  304

Query  343  RINVKQGWGMTE  354
               +  G+G+TE
Sbjct  305  ---LVNGYGLTE  313



Lambda      K        H        a         alpha
   0.324    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00007598

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 326     2e-108


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 326 bits (837),  Expect = 2e-108, Method: Composition-based stats.
 Identities = 125/416 (30%), Positives = 188/416 (45%), Gaps = 25/416 (6%)

Query  46   FTTHDFRLWSQRFAAGLRKAGLQPGDRVLLFSGNDLFFPVVFMGIIMAGGIFTGANPTFV  105
             T  +    + R AAGLR  G+  GDRV +   N   + V F+  + AG ++   NP   
Sbjct  22   LTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFLACLKAGAVYVPLNPRLP  81

Query  106  ARELAFQLQDSGASFLLCADVSLDVGIEAAQIAGLSRDRVFVFNNAIFDGQGEGRKGCRY  165
            A ELA+ L+DSGA  L+  D      +  A         V V      D     ++    
Sbjct  82   AEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVL-----DRDPVLKEEPLP  136

Query  166  WGQLVASVEEGREFVWDELSTPEEADRTLALNYSSGTTGRPKGVEITHKNYVANMLQYNY  225
                    E     V      P + D    + Y+SGTTG+PKGV +TH+N VAN+L    
Sbjct  137  E-------EAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKR  189

Query  226  MFYLNPDWKERSARARWLCFLPMYHAMAQNIFIAAALSREVPVYIMPKF---DFIKMLEY  282
            +    P         R L  LP++H    ++ +   L     V + P F   D   +LE 
Sbjct  190  V---RPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLEL  246

Query  283  VEKFRISDLILVPPVVVALAKHPAVKSGKYVLSSVETIGSGAAPLGREVCEEVEALWPPG  342
            +E+++++ L  VP ++  L +  A K  + +LSS+  + SG APL  E+      L+   
Sbjct  247  IERYKVTVLYGVPTLLNMLLEAGAPK--RALLSSLRLVLSGGAPLPPELARRFRELFGGA  304

Query  343  RINVKQGWGMTETT--CSILGWNPTEKSYSASVGELNANCEAKIMADDGVTEYGHNQRGE  400
               +  G+G+TETT   +       +     SVG      E KI+ D+        + GE
Sbjct  305  ---LVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPGEPGE  361

Query  401  LWVRAPNIMKGYWKNPQATEETKTADGWLKTGDIAYVDDNGRFHVVDRKKELIKVK  456
            L VR P +MKGY  +P+ T E    DGW +TGD+   D++G   +V RKK+ IK+ 
Sbjct  362  LCVRGPGVMKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417



Lambda      K        H        a         alpha
   0.321    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00007600

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 217     1e-67


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 217 bits (554),  Expect = 1e-67, Method: Composition-based stats.
 Identities = 89/312 (29%), Positives = 137/312 (44%), Gaps = 23/312 (7%)

Query  46   FTTHDFRLWSQRFAAGLRKAGLQPGDRVLLFSGNDLFFPVVFMGIIMAGGIFTGANPTFV  105
             T  +    + R AAGLR  G+  GDRV +   N   + V F+  + AG ++   NP   
Sbjct  22   LTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFLACLKAGAVYVPLNPRLP  81

Query  106  ARELAFQLQDSGASFLLCADVSLDVGIEAAQIAGLSRDRVFVFNNAIFDGQGEGRKGCRY  165
            A ELA+ L+DSGA  L+  D      +  A         V V      D     ++    
Sbjct  82   AEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLV-----LDRDPVLKEEPLP  136

Query  166  WGQLVASVEEGREFVWDELSTPEEADRTLALNYSSGTTGRPKGVEITHKNYVANMLQYNY  225
                    E     V      P + D    + Y+SGTTG+PKGV +TH+N VAN+L    
Sbjct  137  E-------EAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKR  189

Query  226  MFYLNPDWKERSARARWLCFLPMYHAMAQNIFIAAALSREVPVYIMPKF---DFIKMLEY  282
            +    P         R L  LP++H    ++ +   L     V + P F   D   +LE 
Sbjct  190  V---RPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLEL  246

Query  283  VEKFRISDLILVPPVVVALAKHPAVKSGKYVLSSVETIGSGAAPLGREVCEEVEALWPPG  342
            +E+++++ L  VP ++  L +  A K  + +LSS+  + SG APL  E+      L+   
Sbjct  247  IERYKVTVLYGVPTLLNMLLEAGAPK--RALLSSLRLVLSGGAPLPPELARRFRELFGGA  304

Query  343  RINVKQGWGMTE  354
               +  G+G+TE
Sbjct  305  ---LVNGYGLTE  313



Lambda      K        H        a         alpha
   0.324    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00007601

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 319     5e-106


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 319 bits (819),  Expect = 5e-106, Method: Composition-based stats.
 Identities = 123/410 (30%), Positives = 184/410 (45%), Gaps = 25/410 (6%)

Query  46   FTTHDFRLWSQRFAAGLRKAGLQPGDRVLLFSGNDLFFPVVFMGIIMAGGIFTGANPTFV  105
             T  +    + R AAGLR  G+  GDRV +   N   + V F+  + AG ++   NP   
Sbjct  22   LTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFLACLKAGAVYVPLNPRLP  81

Query  106  ARELAFQLQDSGASFLLCADVSLDVGIEAAQIAGLSRDRVFVFNNAIFDGQGEGRKGCRY  165
            A ELA+ L+DSGA  L+  D      +  A         V V      D     ++    
Sbjct  82   AEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVL-----DRDPVLKEEPLP  136

Query  166  WGQLVASVEEGREFVWDELSTPEEADRTLALNYSSGTTGRPKGVEITHKNYVANMLQYNY  225
                    E     V      P + D    + Y+SGTTG+PKGV +TH+N VAN+L    
Sbjct  137  E-------EAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKR  189

Query  226  MFYLNPDWKERSARARWLCFLPMYHAMAQNIFIAAALSREVPVYIMPKF---DFIKMLEY  282
            +    P         R L  LP++H    ++ +   L     V + P F   D   +LE 
Sbjct  190  V---RPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLEL  246

Query  283  VEKFRISDLILVPPVVVALAKHPAVKSGKYVLSSVETIGSGAAPLGREVCEEVEALWPPG  342
            +E+++++ L  VP ++  L +  A K  + +LSS+  + SG APL  E+      L+   
Sbjct  247  IERYKVTVLYGVPTLLNMLLEAGAPK--RALLSSLRLVLSGGAPLPPELARRFRELFGGA  304

Query  343  RINVKQGWGMTETT--CSILGWNPTEKSYSASVGELNANCEAKIMADDGVTEYGHNQRGE  400
               +  G+G+TETT   +       +     SVG      E KI+ D+        + GE
Sbjct  305  ---LVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPGEPGE  361

Query  401  LWVRAPNIMKGYWKNPQATEETKTADGWLKTGDIAYVDDNGRFHVVDRKK  450
            L VR P +MKGY  +P+ T E    DGW +TGD+   D++G   +V RKK
Sbjct  362  LCVRGPGVMKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYLEIVGRKK  411



Lambda      K        H        a         alpha
   0.321    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00007602

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 319     8e-106


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 319 bits (819),  Expect = 8e-106, Method: Composition-based stats.
 Identities = 123/410 (30%), Positives = 184/410 (45%), Gaps = 25/410 (6%)

Query  46   FTTHDFRLWSQRFAAGLRKAGLQPGDRVLLFSGNDLFFPVVFMGIIMAGGIFTGANPTFV  105
             T  +    + R AAGLR  G+  GDRV +   N   + V F+  + AG ++   NP   
Sbjct  22   LTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFLACLKAGAVYVPLNPRLP  81

Query  106  ARELAFQLQDSGASFLLCADVSLDVGIEAAQIAGLSRDRVFVFNNAIFDGQGEGRKGCRY  165
            A ELA+ L+DSGA  L+  D      +  A         V V      D     ++    
Sbjct  82   AEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVL-----DRDPVLKEEPLP  136

Query  166  WGQLVASVEEGREFVWDELSTPEEADRTLALNYSSGTTGRPKGVEITHKNYVANMLQYNY  225
                    E     V      P + D    + Y+SGTTG+PKGV +TH+N VAN+L    
Sbjct  137  E-------EAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKR  189

Query  226  MFYLNPDWKERSARARWLCFLPMYHAMAQNIFIAAALSREVPVYIMPKF---DFIKMLEY  282
            +    P         R L  LP++H    ++ +   L     V + P F   D   +LE 
Sbjct  190  V---RPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLEL  246

Query  283  VEKFRISDLILVPPVVVALAKHPAVKSGKYVLSSVETIGSGAAPLGREVCEEVEALWPPG  342
            +E+++++ L  VP ++  L +  A K  + +LSS+  + SG APL  E+      L+   
Sbjct  247  IERYKVTVLYGVPTLLNMLLEAGAPK--RALLSSLRLVLSGGAPLPPELARRFRELFGGA  304

Query  343  RINVKQGWGMTETT--CSILGWNPTEKSYSASVGELNANCEAKIMADDGVTEYGHNQRGE  400
               +  G+G+TETT   +       +     SVG      E KI+ D+        + GE
Sbjct  305  ---LVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPGEPGE  361

Query  401  LWVRAPNIMKGYWKNPQATEETKTADGWLKTGDIAYVDDNGRFHVVDRKK  450
            L VR P +MKGY  +P+ T E    DGW +TGD+   D++G   +V RKK
Sbjct  362  LCVRGPGVMKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYLEIVGRKK  411



Lambda      K        H        a         alpha
   0.321    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 575139000


Query= TCONS_00002237

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 319     8e-106


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 319 bits (819),  Expect = 8e-106, Method: Composition-based stats.
 Identities = 123/410 (30%), Positives = 184/410 (45%), Gaps = 25/410 (6%)

Query  46   FTTHDFRLWSQRFAAGLRKAGLQPGDRVLLFSGNDLFFPVVFMGIIMAGGIFTGANPTFV  105
             T  +    + R AAGLR  G+  GDRV +   N   + V F+  + AG ++   NP   
Sbjct  22   LTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFLACLKAGAVYVPLNPRLP  81

Query  106  ARELAFQLQDSGASFLLCADVSLDVGIEAAQIAGLSRDRVFVFNNAIFDGQGEGRKGCRY  165
            A ELA+ L+DSGA  L+  D      +  A         V V      D     ++    
Sbjct  82   AEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVL-----DRDPVLKEEPLP  136

Query  166  WGQLVASVEEGREFVWDELSTPEEADRTLALNYSSGTTGRPKGVEITHKNYVANMLQYNY  225
                    E     V      P + D    + Y+SGTTG+PKGV +TH+N VAN+L    
Sbjct  137  E-------EAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKR  189

Query  226  MFYLNPDWKERSARARWLCFLPMYHAMAQNIFIAAALSREVPVYIMPKF---DFIKMLEY  282
            +    P         R L  LP++H    ++ +   L     V + P F   D   +LE 
Sbjct  190  V---RPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLEL  246

Query  283  VEKFRISDLILVPPVVVALAKHPAVKSGKYVLSSVETIGSGAAPLGREVCEEVEALWPPG  342
            +E+++++ L  VP ++  L +  A K  + +LSS+  + SG APL  E+      L+   
Sbjct  247  IERYKVTVLYGVPTLLNMLLEAGAPK--RALLSSLRLVLSGGAPLPPELARRFRELFGGA  304

Query  343  RINVKQGWGMTETT--CSILGWNPTEKSYSASVGELNANCEAKIMADDGVTEYGHNQRGE  400
               +  G+G+TETT   +       +     SVG      E KI+ D+        + GE
Sbjct  305  ---LVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPGEPGE  361

Query  401  LWVRAPNIMKGYWKNPQATEETKTADGWLKTGDIAYVDDNGRFHVVDRKK  450
            L VR P +MKGY  +P+ T E    DGW +TGD+   D++G   +V RKK
Sbjct  362  LCVRGPGVMKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYLEIVGRKK  411



Lambda      K        H        a         alpha
   0.321    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 575139000


Query= TCONS_00007603

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 201     5e-63


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 201 bits (513),  Expect = 5e-63, Method: Composition-based stats.
 Identities = 70/236 (30%), Positives = 112/236 (47%), Gaps = 10/236 (4%)

Query  1    MFYLNPDWKERSARARWLCFLPMYHAMAQNIFIAAALSREVPVYIMPKF---DFIKMLEY  57
            +  + P         R L  LP++H    ++ +   L     V + P F   D   +LE 
Sbjct  187  IKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLEL  246

Query  58   VEKFRISDLILVPPVVVALAKHPAVKSGKYVLSSVETIGSGAAPLGREVCEEVEALWPPG  117
            +E+++++ L  VP ++  L +  A K  + +LSS+  + SG APL  E+      L+   
Sbjct  247  IERYKVTVLYGVPTLLNMLLEAGAPK--RALLSSLRLVLSGGAPLPPELARRFRELFGGA  304

Query  118  RINVKQGWGMTETT--CSILGWNPTEKSYSASVGELNANCEAKIMADDGVTEYGHNQRGE  175
               +  G+G+TETT   +       +     SVG      E KI+ D+        + GE
Sbjct  305  ---LVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPGEPGE  361

Query  176  LWVRAPNIMKGYWKNPQATEETKTADGWLKTGDIAYVDDNGRFHVVDRKKELIKVK  231
            L VR P +MKGY  +P+ T E    DGW +TGD+   D++G   +V RKK+ IK+ 
Sbjct  362  LCVRGPGVMKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417



Lambda      K        H        a         alpha
   0.318    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0858    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00002239

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00002240

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00002241

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00002242

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459835 pfam00503, G-alpha, G-protein alpha subunit. G protein...  245     1e-82


>CDD:459835 pfam00503, G-alpha, G-protein alpha subunit.  G proteins couple 
receptors of extracellular signals to intracellular signaling 
pathways. The G protein alpha subunit binds guanyl nucleotide 
and is a weak GTPase. A set of residues that are unique 
to G-alpha as compared to its ancestor the Arf-like family 
form a ring of residues centered on the nucleotide binding 
site. A Ggamma is found fused to an inactive Galpha in the 
Dictyostelium protein gbqA.
Length=316

 Score = 245 bits (627),  Expect = 1e-82, Method: Composition-based stats.
 Identities = 91/142 (64%), Positives = 112/142 (79%), Gaps = 1/142 (1%)

Query  1    MFDVGGQRSERKKWIHCFENVTTILFLVAISEYDQLLFEDETVNRMQEALTLFDSICNSR  60
            +FDVGGQRSERKKWIHCFE+VT I+F+V++SEYDQ+L+ED++ NRM+E+L LF+ ICNS 
Sbjct  171  LFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDSTNRMEESLKLFEEICNSP  230

Query  61   WFVKTSIILFLNKIDRFKEKLPVSPMKNYFPDYEGGA-DYAAACDYILNRFVSLNQAEQK  119
            WF  T IILFLNK D F+EKL  SP+ +YFPDY G   DY  A  YI N+F+ LN+   +
Sbjct  231  WFKNTPIILFLNKKDLFEEKLKKSPLSDYFPDYTGNPNDYEEALKYIRNKFLDLNKNPNR  290

Query  120  QIYTHFTCATDTTQIRFVMAAV  141
            +IYTHFTCATDT  IRFV  AV
Sbjct  291  KIYTHFTCATDTENIRFVFDAV  312



Lambda      K        H        a         alpha
   0.324    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00002243

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.120    0.321    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00002244

Length=194
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          136     1e-40


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 136 bits (345),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 48/130 (37%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query  1    MDLFWR--DTLTCPTEEDYLDMVGNKTGGLFRLAIKLMQAESTTG----IDCVSLVNVMG  54
            +DL WR  D L+C TEE+YL++V  KT  LF LA+KL    S                +G
Sbjct  123  LDLLWRNDDDLSC-TEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLG  181

Query  55   LIFQICDDYLNLSNKTYTQNKGLCEDLTEGKFSFPIIHSIRSNPRNH-QLISILKQRTKD  113
            L FQI DDYL+L        K    D+TEGK ++P+IH++   P     L+ I  +R +D
Sbjct  182  LAFQIQDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALERTPEQRKILLEIYGKRPED  241

Query  114  EEVKLYAISY  123
             E    A   
Sbjct  242  VEKVKEAYEL  251



Lambda      K        H        a         alpha
   0.318    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00007605

Length=194
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          136     1e-40


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 136 bits (345),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 48/130 (37%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query  1    MDLFWR--DTLTCPTEEDYLDMVGNKTGGLFRLAIKLMQAESTTG----IDCVSLVNVMG  54
            +DL WR  D L+C TEE+YL++V  KT  LF LA+KL    S                +G
Sbjct  123  LDLLWRNDDDLSC-TEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLG  181

Query  55   LIFQICDDYLNLSNKTYTQNKGLCEDLTEGKFSFPIIHSIRSNPRNH-QLISILKQRTKD  113
            L FQI DDYL+L        K    D+TEGK ++P+IH++   P     L+ I  +R +D
Sbjct  182  LAFQIQDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALERTPEQRKILLEIYGKRPED  241

Query  114  EEVKLYAISY  123
             E    A   
Sbjct  242  VEKVKEAYEL  251



Lambda      K        H        a         alpha
   0.318    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00002245

Length=194
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          136     1e-40


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 136 bits (345),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 48/130 (37%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query  1    MDLFWR--DTLTCPTEEDYLDMVGNKTGGLFRLAIKLMQAESTTG----IDCVSLVNVMG  54
            +DL WR  D L+C TEE+YL++V  KT  LF LA+KL    S                +G
Sbjct  123  LDLLWRNDDDLSC-TEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLG  181

Query  55   LIFQICDDYLNLSNKTYTQNKGLCEDLTEGKFSFPIIHSIRSNPRNH-QLISILKQRTKD  113
            L FQI DDYL+L        K    D+TEGK ++P+IH++   P     L+ I  +R +D
Sbjct  182  LAFQIQDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALERTPEQRKILLEIYGKRPED  241

Query  114  EEVKLYAISY  123
             E    A   
Sbjct  242  VEKVKEAYEL  251



Lambda      K        H        a         alpha
   0.318    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00007606

Length=194
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          136     1e-40


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 136 bits (345),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 48/130 (37%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query  1    MDLFWR--DTLTCPTEEDYLDMVGNKTGGLFRLAIKLMQAESTTG----IDCVSLVNVMG  54
            +DL WR  D L+C TEE+YL++V  KT  LF LA+KL    S                +G
Sbjct  123  LDLLWRNDDDLSC-TEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLG  181

Query  55   LIFQICDDYLNLSNKTYTQNKGLCEDLTEGKFSFPIIHSIRSNPRNH-QLISILKQRTKD  113
            L FQI DDYL+L        K    D+TEGK ++P+IH++   P     L+ I  +R +D
Sbjct  182  LAFQIQDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALERTPEQRKILLEIYGKRPED  241

Query  114  EEVKLYAISY  123
             E    A   
Sbjct  242  VEKVKEAYEL  251



Lambda      K        H        a         alpha
   0.318    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00007609

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429802 pfam08045, CDC14, Cell division control protein 14, SI...  459     1e-165


>CDD:429802 pfam08045, CDC14, Cell division control protein 14, SIN component. 
 Cdc14 is a component of the septation initiation network 
(SIN) and is required for the localization and activity 
of Sid1. Sid1 is a protein kinase that localizes asymmetrically 
to one spindle pole body (SPB) in anaphase disappears prior 
to cell separation.
Length=284

 Score = 459 bits (1182),  Expect = 1e-165, Method: Composition-based stats.
 Identities = 209/293 (71%), Positives = 236/293 (81%), Gaps = 12/293 (4%)

Query  1    METLLAHSFDYLSSYEPSKVRKGLRQVEGLLAQICLSKSKQPVSEKRRSLLSFG--APQP  58
            ME LL+ +FD LSSY+PSK+RKGLRQVEGLLAQICLSK      +KR S  S G  A   
Sbjct  1    MEALLSLAFDNLSSYDPSKIRKGLRQVEGLLAQICLSKPS-ISPKKRNSSASAGREAQPS  59

Query  59   EPKALSDLKDDPAFREFFKLQEGFQWNVAMRLVTCLEHLLGRGRTGTNDLLILSTLELIQ  118
             PK+LS+L  DPAFREFFKLQEGF+WNVA RL+ CL+ LLGRG  G NDLLILS L+L+Q
Sbjct  60   PPKSLSELSQDPAFREFFKLQEGFEWNVASRLINCLDRLLGRGSDGQNDLLILSALDLLQ  119

Query  119  GVLLLHPPSRTLFAREIYMNLLLDLLDPINCPAIQSATLLTLVTALLDHPANTRTFEELD  178
            G+LLLHPPSR+LF+REIYMNLLLDLL+P NCPAIQSATLLTLVTALLD P NTRTFE LD
Sbjct  120  GLLLLHPPSRSLFSREIYMNLLLDLLEPANCPAIQSATLLTLVTALLDTPQNTRTFESLD  179

Query  179  GLLTVTSLFKQRATSREVKLKLVEFLYFYLMPETPTYPVGA-SAPNTAVCGLQRSPSKLG  237
            GLLTVTSLFK R+TSREVKLKLVEFLYFYLMPETP+ P GA S P+ A   LQRSPSKL 
Sbjct  180  GLLTVTSLFKSRSTSREVKLKLVEFLYFYLMPETPSIPRGASSRPSPA---LQRSPSKLA  236

Query  238  GGPYSRSLNVAGPGHGGKGHGDTRTTEEKQALLGRYLNNVEDLVEDLKETAPF  290
            G     + + AG   GG   GDT++TEEKQ LLGRYL+NV+DLVEDL+E+ PF
Sbjct  237  G-----AFDRAGRRRGGSDSGDTKSTEEKQNLLGRYLSNVDDLVEDLRESKPF  284



Lambda      K        H        a         alpha
   0.318    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00002246

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429802 pfam08045, CDC14, Cell division control protein 14, SI...  459     1e-165


>CDD:429802 pfam08045, CDC14, Cell division control protein 14, SIN component. 
 Cdc14 is a component of the septation initiation network 
(SIN) and is required for the localization and activity 
of Sid1. Sid1 is a protein kinase that localizes asymmetrically 
to one spindle pole body (SPB) in anaphase disappears prior 
to cell separation.
Length=284

 Score = 459 bits (1182),  Expect = 1e-165, Method: Composition-based stats.
 Identities = 209/293 (71%), Positives = 236/293 (81%), Gaps = 12/293 (4%)

Query  1    METLLAHSFDYLSSYEPSKVRKGLRQVEGLLAQICLSKSKQPVSEKRRSLLSFG--APQP  58
            ME LL+ +FD LSSY+PSK+RKGLRQVEGLLAQICLSK      +KR S  S G  A   
Sbjct  1    MEALLSLAFDNLSSYDPSKIRKGLRQVEGLLAQICLSKPS-ISPKKRNSSASAGREAQPS  59

Query  59   EPKALSDLKDDPAFREFFKLQEGFQWNVAMRLVTCLEHLLGRGRTGTNDLLILSTLELIQ  118
             PK+LS+L  DPAFREFFKLQEGF+WNVA RL+ CL+ LLGRG  G NDLLILS L+L+Q
Sbjct  60   PPKSLSELSQDPAFREFFKLQEGFEWNVASRLINCLDRLLGRGSDGQNDLLILSALDLLQ  119

Query  119  GVLLLHPPSRTLFAREIYMNLLLDLLDPINCPAIQSATLLTLVTALLDHPANTRTFEELD  178
            G+LLLHPPSR+LF+REIYMNLLLDLL+P NCPAIQSATLLTLVTALLD P NTRTFE LD
Sbjct  120  GLLLLHPPSRSLFSREIYMNLLLDLLEPANCPAIQSATLLTLVTALLDTPQNTRTFESLD  179

Query  179  GLLTVTSLFKQRATSREVKLKLVEFLYFYLMPETPTYPVGA-SAPNTAVCGLQRSPSKLG  237
            GLLTVTSLFK R+TSREVKLKLVEFLYFYLMPETP+ P GA S P+ A   LQRSPSKL 
Sbjct  180  GLLTVTSLFKSRSTSREVKLKLVEFLYFYLMPETPSIPRGASSRPSPA---LQRSPSKLA  236

Query  238  GGPYSRSLNVAGPGHGGKGHGDTRTTEEKQALLGRYLNNVEDLVEDLKETAPF  290
            G     + + AG   GG   GDT++TEEKQ LLGRYL+NV+DLVEDL+E+ PF
Sbjct  237  G-----AFDRAGRRRGGSDSGDTKSTEEKQNLLGRYLSNVDDLVEDLRESKPF  284



Lambda      K        H        a         alpha
   0.318    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00002247

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429802 pfam08045, CDC14, Cell division control protein 14, SI...  315     2e-110


>CDD:429802 pfam08045, CDC14, Cell division control protein 14, SIN component. 
 Cdc14 is a component of the septation initiation network 
(SIN) and is required for the localization and activity 
of Sid1. Sid1 is a protein kinase that localizes asymmetrically 
to one spindle pole body (SPB) in anaphase disappears prior 
to cell separation.
Length=284

 Score = 315 bits (810),  Expect = 2e-110, Method: Composition-based stats.
 Identities = 149/204 (73%), Positives = 168/204 (82%), Gaps = 9/204 (4%)

Query  1    MRLVTCLEHLLGRGRTGTNDLLILSTLELIQGVLLLHPPSRTLFAREIYMNLLLDLLDPI  60
             RL+ CL+ LLGRG  G NDLLILS L+L+QG+LLLHPPSR+LF+REIYMNLLLDLL+P 
Sbjct  89   SRLINCLDRLLGRGSDGQNDLLILSALDLLQGLLLLHPPSRSLFSREIYMNLLLDLLEPA  148

Query  61   NCPAIQSATLLTLVTALLDHPANTRTFEELDGLLTVTSLFKQRATSREVKLKLVEFLYFY  120
            NCPAIQSATLLTLVTALLD P NTRTFE LDGLLTVTSLFK R+TSREVKLKLVEFLYFY
Sbjct  149  NCPAIQSATLLTLVTALLDTPQNTRTFESLDGLLTVTSLFKSRSTSREVKLKLVEFLYFY  208

Query  121  LMPETPTYPVGA-SAPNTAVCGLQRSPSKLGGGPYSRSLNVAGPGHGGKGHGDTRTTEEK  179
            LMPETP+ P GA S P+ A   LQRSPSKL G     + + AG   GG   GDT++TEEK
Sbjct  209  LMPETPSIPRGASSRPSPA---LQRSPSKLAG-----AFDRAGRRRGGSDSGDTKSTEEK  260

Query  180  QALLGRYLNNVEDLVEDLKETAPF  203
            Q LLGRYL+NV+DLVEDL+E+ PF
Sbjct  261  QNLLGRYLSNVDDLVEDLRESKPF  284



Lambda      K        H        a         alpha
   0.319    0.138    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00007611

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00007612

Length=108
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461300 pfam04418, DUF543, Domain of unknown function (DUF543)...  90.4    5e-26


>CDD:461300 pfam04418, DUF543, Domain of unknown function (DUF543).  This 
family of short eukaryotic proteins has no known function. 
Most of the members of this family are only 80 amino acid residues 
long. However the Arabidopsis homolog is over 300 residues 
long. The presumed domain contains a conserved amino terminal 
cysteine and a conserved motif GXGXGXG in the carboxy 
terminal half that may be functionally important.
Length=75

 Score = 90.4 bits (225),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 0/50 (0%)

Query  47  WDRAISSMIIRSSLGLSFGVVFSVLLFKRRAWPAWVGLGFGAGRAWEEAD  96
           WD  +S+ ++++ LG   GVV SVLLF+RRA P W+G GFG GRA+ E D
Sbjct  22  WDVCLSNFLVKTGLGFGVGVVASVLLFRRRAAPVWLGAGFGLGRAYAECD  71



Lambda      K        H        a         alpha
   0.330    0.139    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00007613

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00007614

Length=87
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425799 pfam00649, Copper-fist, Copper fist DNA binding domain     61.8    2e-15


>CDD:425799 pfam00649, Copper-fist, Copper fist DNA binding domain.  
Length=38

 Score = 61.8 bits (151),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  4   DEEGAKWSCKPCIRGHRSSKCQHFDRLMIKVPKAGRP  40
              G K++C+ CIRGHRSS C H DR + ++ K GRP
Sbjct  2   LINGEKYACESCIRGHRSSTCNHTDRPLFEIRKKGRP  38



Lambda      K        H        a         alpha
   0.325    0.139    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00002249

Length=108
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461300 pfam04418, DUF543, Domain of unknown function (DUF543)...  90.4    5e-26


>CDD:461300 pfam04418, DUF543, Domain of unknown function (DUF543).  This 
family of short eukaryotic proteins has no known function. 
Most of the members of this family are only 80 amino acid residues 
long. However the Arabidopsis homolog is over 300 residues 
long. The presumed domain contains a conserved amino terminal 
cysteine and a conserved motif GXGXGXG in the carboxy 
terminal half that may be functionally important.
Length=75

 Score = 90.4 bits (225),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 0/50 (0%)

Query  47  WDRAISSMIIRSSLGLSFGVVFSVLLFKRRAWPAWVGLGFGAGRAWEEAD  96
           WD  +S+ ++++ LG   GVV SVLLF+RRA P W+G GFG GRA+ E D
Sbjct  22  WDVCLSNFLVKTGLGFGVGVVASVLLFRRRAAPVWLGAGFGLGRAYAECD  71



Lambda      K        H        a         alpha
   0.330    0.139    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00002250

Length=1481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431289 pfam10441, Urb2, Urb2/Npa2 family. This family include...  250     2e-76


>CDD:431289 pfam10441, Urb2, Urb2/Npa2 family.  This family includes the 
Urb2 protein from yeast that are involved in ribosome biogenesis.
Length=213

 Score = 250 bits (640),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 95/231 (41%), Positives = 130/231 (56%), Gaps = 22/231 (10%)

Query  1249  ATECLDILLRNHTRCISQWNIDSLLAAIAVCASKAGPRINPEYAATIYVRLCKLMGVLLG  1308
             A E LD LL +     SQ++I+ LL+ ++   S     +    A  I++ LC L+  +L 
Sbjct  3     ALEVLDTLLSSKPWLFSQYDIEQLLSLVSTLLSPL-LSLESSSADEIFIALCSLLSTILR  61

Query  1309  LHRQKLGGRFHLILPAMQRLLNCLFARSRKRSRSMLSAKGHTQQPYWLAPLQASHAVHFT  1368
              HR KL GRFHL+L  +Q LL CLF      +                 PL A HA   +
Sbjct  62    HHRDKLSGRFHLLLSVLQALLRCLFTWLDTGT-------------SKPLPLSAKHAKALS  108

Query  1369  RLLTSLCDPTVSAVSRPTQSGGNRDALTDQTKKAKRIAGQYLQYLIMEYAQSSLRGSLVP  1428
             RLLT+LC+PTVS+VS+         +LT  TK AK+  G++  YL+  Y +  L   L P
Sbjct  109   RLLTNLCEPTVSSVSK--------SSLTSATKSAKKSLGKHAPYLLAAYIKLQLGSGLPP  160

Query  1429  EVKAAILPGLYAVLDVMSRETMRAMNAGLDVSGRAIFKGLYDDYVKFGKWN  1479
             EV+ A+ PGLYA+ DV+S+E ++ +NA LD SGRA+FK LY DY KFGKW 
Sbjct  161   EVREALTPGLYAIFDVLSQEELQLLNAALDASGRAVFKTLYKDYKKFGKWK  211



Lambda      K        H        a         alpha
   0.320    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1875321484


Query= TCONS_00002251

Length=1492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431289 pfam10441, Urb2, Urb2/Npa2 family. This family include...  250     2e-76


>CDD:431289 pfam10441, Urb2, Urb2/Npa2 family.  This family includes the 
Urb2 protein from yeast that are involved in ribosome biogenesis.
Length=213

 Score = 250 bits (640),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 95/231 (41%), Positives = 130/231 (56%), Gaps = 22/231 (10%)

Query  1260  ATECLDILLRNHTRCISQWNIDSLLAAIAVCASKAGPRINPEYAATIYVRLCKLMGVLLG  1319
             A E LD LL +     SQ++I+ LL+ ++   S     +    A  I++ LC L+  +L 
Sbjct  3     ALEVLDTLLSSKPWLFSQYDIEQLLSLVSTLLSPL-LSLESSSADEIFIALCSLLSTILR  61

Query  1320  LHRQKLGGRFHLILPAMQRLLNCLFARSRKRSRSMLSAKGHTQQPYWLAPLQASHAVHFT  1379
              HR KL GRFHL+L  +Q LL CLF      +                 PL A HA   +
Sbjct  62    HHRDKLSGRFHLLLSVLQALLRCLFTWLDTGT-------------SKPLPLSAKHAKALS  108

Query  1380  RLLTSLCDPTVSAVSRPTQSGGNRDALTDQTKKAKRIAGQYLQYLIMEYAQSSLRGSLVP  1439
             RLLT+LC+PTVS+VS+         +LT  TK AK+  G++  YL+  Y +  L   L P
Sbjct  109   RLLTNLCEPTVSSVSK--------SSLTSATKSAKKSLGKHAPYLLAAYIKLQLGSGLPP  160

Query  1440  EVKAAILPGLYAVLDVMSRETMRAMNAGLDVSGRAIFKGLYDDYVKFGKWN  1490
             EV+ A+ PGLYA+ DV+S+E ++ +NA LD SGRA+FK LY DY KFGKW 
Sbjct  161   EVREALTPGLYAIFDVLSQEELQLLNAALDASGRAVFKTLYKDYKKFGKWK  211



Lambda      K        H        a         alpha
   0.320    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1890248066


Query= TCONS_00007615

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00002252

Length=557
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  413     4e-141


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 413 bits (1064),  Expect = 4e-141, Method: Composition-based stats.
 Identities = 188/454 (41%), Positives = 272/454 (60%), Gaps = 16/454 (4%)

Query  33   PVDPDRRQWKWFNFIAFWIADSLNINTWMISSSMIVDGLSWWQSWICVWVGYFIAAIFIC  92
            PV  + R W   N  +FW+  + NINTW+I +  +  GL+WWQS + +  G  I AIF+ 
Sbjct  1    PVPEEERTWSTRNLFSFWLGANFNINTWVIGALGVALGLNWWQSVLAIIAGNLIGAIFVA  60

Query  93   LTGRIGAKYHVPFPVAVRSSFGIWGSFWPVLNRAVMAVIWYGVQSYIGGQCVTVMIEAIW  152
            L GR GAKY +PFP+  R+SFGI GS  P L RAV+A  W+G+Q++IG + + +M+  I+
Sbjct  61   LLGRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIF  120

Query  153  PSYAHLHNSLPASAGVETKDFVSFFLFWLLSLPALWFPIHKIRHLFTAKAIYSPIAAIAF  212
              +      + A  G    + V+FF+FWL+ L  +W  +  IR  F   A   P+AA  F
Sbjct  121  GHWLW----IGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAPLIPVAAFGF  176

Query  213  FAWSIARANGIGPVVHQPATVHGSTLAWAIVKAIMSCLGNFAALIMNDPDFSRFARKPKD  272
              W+  +A G GPV  QP +   S L  +   A+  C   +A LI N PDF+R+A   + 
Sbjct  177  LIWAAVKAGG-GPVFDQPVSPGKSELFLS---AVAGCAAGWATLIANAPDFTRYAPTARS  232

Query  273  ALWSQLLTIPIGFGITSFIGIIASSASAVIYNTDPVWNPLDLLRMFLDGASSGERFGIFV  332
            +   QL+ +P GF + + IGI+ ++A+   Y   P W+PLD+L  F   A      G+F+
Sbjct  233  SSKIQLVAVPGGFTLFALIGILGAAAAYAAYG-APAWDPLDILARFDPTA------GVFL  285

Query  333  IATGFALAQLGTNISANSVSAGTDLTALLPRYLNIRRGSYICAAVGLAMCPWNLVSSSNQ  392
             A   ALAQLGTNISAN  SAG+DL ALLP+ +N +RGS I A + L +CPW L+ +S  
Sbjct  286  PAILVALAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNSAF  345

Query  393  -FTTYLSAYSIFLSAIAGPMICDYYLNRKGYLQVKDLYSASKGGPYYFVFGFSWHAYASY  451
             FTT+LS  S FLS +AG +I DY++ R+GYL V  LY+  +G  Y++  G +W A+A+Y
Sbjct  346  MFTTFLSLLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVNWRAFAAY  405

Query  452  LSGILVNIVGFAGAVGRTVPLGAQYIYNINYFSG  485
            + GI   + GF+G+VG  VP GA   ++++Y  G
Sbjct  406  IVGIAAGLPGFSGSVGIKVPPGAMLGFDLSYLVG  439



Lambda      K        H        a         alpha
   0.325    0.138    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 694909020


Query= TCONS_00007616

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  276     7e-90


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 276 bits (709),  Expect = 7e-90, Method: Composition-based stats.
 Identities = 136/340 (40%), Positives = 198/340 (58%), Gaps = 16/340 (5%)

Query  1    MIEAIWPSYAHLHNSLPASAGVETKDFVSFFLFWLLSLPALWFPIHKIRHLFTAKAIYSP  60
            M+  I+  +  +     A  G    + V+FF+FWL+ L  +W  +  IR  F   A   P
Sbjct  115  MLGKIFGHWLWI----GAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAPLIP  170

Query  61   IAAIAFFAWSIARANGIGPVVHQPATVHGSTLAWAIVKAIMSCLGNFAALIMNDPDFSRF  120
            +AA  F  W+  +A G GPV  QP +   S L  +   A+  C   +A LI N PDF+R+
Sbjct  171  VAAFGFLIWAAVKAGG-GPVFDQPVSPGKSELFLS---AVAGCAAGWATLIANAPDFTRY  226

Query  121  ARKPKDALWSQLLTIPIGFGITSFIGIIASSASAVIYNTDPVWNPLDLLRMFLDGASSGE  180
            A   + +   QL+ +P GF + + IGI+ ++A+   Y   P W+PLD+L  F   A    
Sbjct  227  APTARSSSKIQLVAVPGGFTLFALIGILGAAAAYAAYG-APAWDPLDILARFDPTA----  281

Query  181  RFGIFVIATGFALAQLGTNISANSVSAGTDLTALLPRYLNIRRGSYICAAVGLAMCPWNL  240
              G+F+ A   ALAQLGTNISAN  SAG+DL ALLP+ +N +RGS I A + L +CPW L
Sbjct  282  --GVFLPAILVALAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKL  339

Query  241  VSSSNQ-FTTYLSAYSIFLSAIAGPMICDYYLNRKGYLQVKDLYSASKGGPYYFVFGFSW  299
            + +S   FTT+LS  S FLS +AG +I DY++ R+GYL V  LY+  +G  Y++  G +W
Sbjct  340  LGNSAFMFTTFLSLLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVNW  399

Query  300  HAYASYLSGILVNIVGFAGAVGRTVPLGAQYIYNINYFSG  339
             A+A+Y+ GI   + GF+G+VG  VP GA   ++++Y  G
Sbjct  400  RAFAAYIVGIAAGLPGFSGSVGIKVPPGAMLGFDLSYLVG  439



Lambda      K        H        a         alpha
   0.324    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500176124


Query= TCONS_00007617

Length=557
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  413     4e-141


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 413 bits (1064),  Expect = 4e-141, Method: Composition-based stats.
 Identities = 188/454 (41%), Positives = 272/454 (60%), Gaps = 16/454 (4%)

Query  33   PVDPDRRQWKWFNFIAFWIADSLNINTWMISSSMIVDGLSWWQSWICVWVGYFIAAIFIC  92
            PV  + R W   N  +FW+  + NINTW+I +  +  GL+WWQS + +  G  I AIF+ 
Sbjct  1    PVPEEERTWSTRNLFSFWLGANFNINTWVIGALGVALGLNWWQSVLAIIAGNLIGAIFVA  60

Query  93   LTGRIGAKYHVPFPVAVRSSFGIWGSFWPVLNRAVMAVIWYGVQSYIGGQCVTVMIEAIW  152
            L GR GAKY +PFP+  R+SFGI GS  P L RAV+A  W+G+Q++IG + + +M+  I+
Sbjct  61   LLGRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIF  120

Query  153  PSYAHLHNSLPASAGVETKDFVSFFLFWLLSLPALWFPIHKIRHLFTAKAIYSPIAAIAF  212
              +      + A  G    + V+FF+FWL+ L  +W  +  IR  F   A   P+AA  F
Sbjct  121  GHWLW----IGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAPLIPVAAFGF  176

Query  213  FAWSIARANGIGPVVHQPATVHGSTLAWAIVKAIMSCLGNFAALIMNDPDFSRFARKPKD  272
              W+  +A G GPV  QP +   S L  +   A+  C   +A LI N PDF+R+A   + 
Sbjct  177  LIWAAVKAGG-GPVFDQPVSPGKSELFLS---AVAGCAAGWATLIANAPDFTRYAPTARS  232

Query  273  ALWSQLLTIPIGFGITSFIGIIASSASAVIYNTDPVWNPLDLLRMFLDGASSGERFGIFV  332
            +   QL+ +P GF + + IGI+ ++A+   Y   P W+PLD+L  F   A      G+F+
Sbjct  233  SSKIQLVAVPGGFTLFALIGILGAAAAYAAYG-APAWDPLDILARFDPTA------GVFL  285

Query  333  IATGFALAQLGTNISANSVSAGTDLTALLPRYLNIRRGSYICAAVGLAMCPWNLVSSSNQ  392
             A   ALAQLGTNISAN  SAG+DL ALLP+ +N +RGS I A + L +CPW L+ +S  
Sbjct  286  PAILVALAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNSAF  345

Query  393  -FTTYLSAYSIFLSAIAGPMICDYYLNRKGYLQVKDLYSASKGGPYYFVFGFSWHAYASY  451
             FTT+LS  S FLS +AG +I DY++ R+GYL V  LY+  +G  Y++  G +W A+A+Y
Sbjct  346  MFTTFLSLLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVNWRAFAAY  405

Query  452  LSGILVNIVGFAGAVGRTVPLGAQYIYNINYFSG  485
            + GI   + GF+G+VG  VP GA   ++++Y  G
Sbjct  406  IVGIAAGLPGFSGSVGIKVPPGAMLGFDLSYLVG  439



Lambda      K        H        a         alpha
   0.325    0.138    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 694909020


Query= TCONS_00002253

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  182     1e-55


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 182 bits (465),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 92/238 (39%), Positives = 131/238 (55%), Gaps = 15/238 (6%)

Query  1    MIEAIWPSYAHLHNSLPASAGVETKDFVSFFLFWLLSLPALWFPIHKIRHLFTAKAIYSP  60
            M+  I+  +  +     A  G    + V+FF+FWL+ L  +W  +  IR  F   A   P
Sbjct  115  MLGKIFGHWLWI----GAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAPLIP  170

Query  61   IAAIAFFAWSIARANGIGPVVHQPATVHGSTLAWAIVKAIMSCLGNFAALIMNDPDFSRF  120
            +AA  F  W+  +A G GPV  QP +   S L  +   A+  C   +A LI N PDF+R+
Sbjct  171  VAAFGFLIWAAVKAGG-GPVFDQPVSPGKSELFLS---AVAGCAAGWATLIANAPDFTRY  226

Query  121  ARKPKDALWSQLLTIPIGFGITSFIGIIASSASAVIYNTDPVWNPLDLLRMFLDGASSGE  180
            A   + +   QL+ +P GF + + IGI+ ++A+   Y   P W+PLD+L  F   A    
Sbjct  227  APTARSSSKIQLVAVPGGFTLFALIGILGAAAAYAAYG-APAWDPLDILARFDPTA----  281

Query  181  RFGIFVIATGFALAQLGTNISANSVSAGTDLTALLPRYLNIRRGSYICAAVGLAMCPV  238
              G+F+ A   ALAQLGTNISAN  SAG+DL ALLP+ +N +RGS I A + L +CP 
Sbjct  282  --GVFLPAILVALAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPW  337



Lambda      K        H        a         alpha
   0.327    0.138    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 277421980


Query= TCONS_00002254

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  320     8e-107


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 320 bits (821),  Expect = 8e-107, Method: Composition-based stats.
 Identities = 145/352 (41%), Positives = 205/352 (58%), Gaps = 15/352 (4%)

Query  33   PVDPDRRQWKWFNFIAFWIADSLNINTWMISSSMIVDGLSWWQSWICVWVGYFIAAIFIC  92
            PV  + R W   N  +FW+  + NINTW+I +  +  GL+WWQS + +  G  I AIF+ 
Sbjct  1    PVPEEERTWSTRNLFSFWLGANFNINTWVIGALGVALGLNWWQSVLAIIAGNLIGAIFVA  60

Query  93   LTGRIGAKYHVPFPVAVRSSFGIWGSFWPVLNRAVMAVIWYGVQSYIGGECVTVMIEAIW  152
            L GR GAKY +PFP+  R+SFGI GS  P L RAV+A  W+G+Q++IG E + +M+  I+
Sbjct  61   LLGRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIF  120

Query  153  PSYAHLHNSLPASAGVETKDFVSFFLFWLLSLPALWFPIHKIRHLFTAKAIYSPIAAIAF  212
              +      + A  G    + V+FF+FWL+ L  +W  +  IR  F   A   P+AA  F
Sbjct  121  GHWLW----IGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAPLIPVAAFGF  176

Query  213  FAWSIARANGIGPVVHQPATVHGSTLAWAIVKAIMSCLGNFAALIMNDPDFSRFARKPKD  272
              W+  +A G GPV  QP +   S L  +   A+  C   +A LI N PDF+R+A   + 
Sbjct  177  LIWAAVKAGG-GPVFDQPVSPGKSELFLS---AVAGCAAGWATLIANAPDFTRYAPTARS  232

Query  273  ALWSQLLTIPIGFGITSFIGIIASSASAVIYNTDPVWNPLDLLRMFLDGASSGERFGIFV  332
            +   QL+ +P GF + + IGI+ ++A+   Y   P W+PLD+L  F   A      G+F+
Sbjct  233  SSKIQLVAVPGGFTLFALIGILGAAAAYAAYG-APAWDPLDILARFDPTA------GVFL  285

Query  333  IATGFALAQLGTNISANSVSAGTDLTALLPRYLNIRRGSYICAAVGLAMCPV  384
             A   ALAQLGTNISAN  SAG+DL ALLP+ +N +RGS I A + L +CP 
Sbjct  286  PAILVALAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPW  337



Lambda      K        H        a         alpha
   0.327    0.138    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00002255

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00007621

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00007620

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00007622

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00007623

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00002258

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00002257

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00007624

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00007625

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00002261

Length=1145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific pho...  249     1e-77
CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific pho...  205     3e-62


>CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific phospholipase 
C, X domain.  This associates with pfam00387 to form a single 
structural unit.
Length=142

 Score = 249 bits (638),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 80/141 (57%), Positives = 101/141 (72%), Gaps = 0/141 (0%)

Query  536  DRPLNEYFISSSHNTYLLGRQVAGASSTEAYISALSQGCRCVEIDCWDGADGRPIVSHGR  595
             +PL+ YFISSSHNTYL G Q+ G SS EAYI AL +GCRCVE+DCWDG DG P+V HG 
Sbjct  2    SQPLSHYFISSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGY  61

Query  596  TMTTSVLFADCITVINRYAFITCDFPLILSLEVHCNPEQQLAMVRIMKDTFKERLVLEPL  655
            T+T+ + F D +  I  YAF+T  +P+ILSLE HC+PEQQ  M  I+K+ F + L   PL
Sbjct  62   TLTSKIPFRDVLEAIKDYAFVTSPYPVILSLENHCSPEQQKKMAEILKEIFGDMLYTPPL  121

Query  656  LTNSFVLPSPEELKGRILVKV  676
              +   LPSPE+LKG+IL+K 
Sbjct  122  DDDLTELPSPEDLKGKILIKG  142


>CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase 
C, Y domain.  This associates with pfam00388 to form a single 
structural unit.
Length=114

 Score = 205 bits (523),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 62/116 (53%), Positives = 79/116 (68%), Gaps = 3/116 (3%)

Query  781  LSDLGVYTRGYKWHSFSSPESQRFNHVYSFAERAFESICRDAENKALLERHNQKYLTRVY  840
            LSDL VYT+  K+ SFS+PES+  NH++SF+E     + +   + A   +HN+++L RVY
Sbjct  1    LSDLVVYTQSVKFKSFSTPESKTPNHIFSFSESKALKLIKS--SSAAFVKHNRRHLMRVY  58

Query  841  PSGFRLRSSNFDPLKFWRRGVQMAALNWQTYDIGMQLNQAMFAAGTDRTGYVLKPE  896
            P G R+ SSNF+P  FW  GVQM ALNWQT D GMQLN+ MF A     GYVLKPE
Sbjct  59   PKGTRVDSSNFNPQPFWNCGVQMVALNWQTPDEGMQLNEGMF-ADNGGCGYVLKPE  113



Lambda      K        H        a         alpha
   0.316    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1463257424


Query= TCONS_00002260

Length=1145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific pho...  249     1e-77
CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific pho...  205     3e-62


>CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific phospholipase 
C, X domain.  This associates with pfam00387 to form a single 
structural unit.
Length=142

 Score = 249 bits (638),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 80/141 (57%), Positives = 101/141 (72%), Gaps = 0/141 (0%)

Query  536  DRPLNEYFISSSHNTYLLGRQVAGASSTEAYISALSQGCRCVEIDCWDGADGRPIVSHGR  595
             +PL+ YFISSSHNTYL G Q+ G SS EAYI AL +GCRCVE+DCWDG DG P+V HG 
Sbjct  2    SQPLSHYFISSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGY  61

Query  596  TMTTSVLFADCITVINRYAFITCDFPLILSLEVHCNPEQQLAMVRIMKDTFKERLVLEPL  655
            T+T+ + F D +  I  YAF+T  +P+ILSLE HC+PEQQ  M  I+K+ F + L   PL
Sbjct  62   TLTSKIPFRDVLEAIKDYAFVTSPYPVILSLENHCSPEQQKKMAEILKEIFGDMLYTPPL  121

Query  656  LTNSFVLPSPEELKGRILVKV  676
              +   LPSPE+LKG+IL+K 
Sbjct  122  DDDLTELPSPEDLKGKILIKG  142


>CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase 
C, Y domain.  This associates with pfam00388 to form a single 
structural unit.
Length=114

 Score = 205 bits (523),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 62/116 (53%), Positives = 79/116 (68%), Gaps = 3/116 (3%)

Query  781  LSDLGVYTRGYKWHSFSSPESQRFNHVYSFAERAFESICRDAENKALLERHNQKYLTRVY  840
            LSDL VYT+  K+ SFS+PES+  NH++SF+E     + +   + A   +HN+++L RVY
Sbjct  1    LSDLVVYTQSVKFKSFSTPESKTPNHIFSFSESKALKLIKS--SSAAFVKHNRRHLMRVY  58

Query  841  PSGFRLRSSNFDPLKFWRRGVQMAALNWQTYDIGMQLNQAMFAAGTDRTGYVLKPE  896
            P G R+ SSNF+P  FW  GVQM ALNWQT D GMQLN+ MF A     GYVLKPE
Sbjct  59   PKGTRVDSSNFNPQPFWNCGVQMVALNWQTPDEGMQLNEGMF-ADNGGCGYVLKPE  113



Lambda      K        H        a         alpha
   0.316    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0858    0.140     1.90     42.6     43.6 

Effective search space used: 1463257424


Query= TCONS_00007626

Length=1145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific pho...  249     1e-77
CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific pho...  205     3e-62


>CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific phospholipase 
C, X domain.  This associates with pfam00387 to form a single 
structural unit.
Length=142

 Score = 249 bits (638),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 80/141 (57%), Positives = 101/141 (72%), Gaps = 0/141 (0%)

Query  536  DRPLNEYFISSSHNTYLLGRQVAGASSTEAYISALSQGCRCVEIDCWDGADGRPIVSHGR  595
             +PL+ YFISSSHNTYL G Q+ G SS EAYI AL +GCRCVE+DCWDG DG P+V HG 
Sbjct  2    SQPLSHYFISSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGY  61

Query  596  TMTTSVLFADCITVINRYAFITCDFPLILSLEVHCNPEQQLAMVRIMKDTFKERLVLEPL  655
            T+T+ + F D +  I  YAF+T  +P+ILSLE HC+PEQQ  M  I+K+ F + L   PL
Sbjct  62   TLTSKIPFRDVLEAIKDYAFVTSPYPVILSLENHCSPEQQKKMAEILKEIFGDMLYTPPL  121

Query  656  LTNSFVLPSPEELKGRILVKV  676
              +   LPSPE+LKG+IL+K 
Sbjct  122  DDDLTELPSPEDLKGKILIKG  142


>CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase 
C, Y domain.  This associates with pfam00388 to form a single 
structural unit.
Length=114

 Score = 205 bits (523),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 62/116 (53%), Positives = 79/116 (68%), Gaps = 3/116 (3%)

Query  781  LSDLGVYTRGYKWHSFSSPESQRFNHVYSFAERAFESICRDAENKALLERHNQKYLTRVY  840
            LSDL VYT+  K+ SFS+PES+  NH++SF+E     + +   + A   +HN+++L RVY
Sbjct  1    LSDLVVYTQSVKFKSFSTPESKTPNHIFSFSESKALKLIKS--SSAAFVKHNRRHLMRVY  58

Query  841  PSGFRLRSSNFDPLKFWRRGVQMAALNWQTYDIGMQLNQAMFAAGTDRTGYVLKPE  896
            P G R+ SSNF+P  FW  GVQM ALNWQT D GMQLN+ MF A     GYVLKPE
Sbjct  59   PKGTRVDSSNFNPQPFWNCGVQMVALNWQTPDEGMQLNEGMF-ADNGGCGYVLKPE  113



Lambda      K        H        a         alpha
   0.316    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1463257424


Query= TCONS_00002264

Length=1145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific pho...  249     1e-77
CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific pho...  205     3e-62


>CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific phospholipase 
C, X domain.  This associates with pfam00387 to form a single 
structural unit.
Length=142

 Score = 249 bits (638),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 80/141 (57%), Positives = 101/141 (72%), Gaps = 0/141 (0%)

Query  536  DRPLNEYFISSSHNTYLLGRQVAGASSTEAYISALSQGCRCVEIDCWDGADGRPIVSHGR  595
             +PL+ YFISSSHNTYL G Q+ G SS EAYI AL +GCRCVE+DCWDG DG P+V HG 
Sbjct  2    SQPLSHYFISSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGY  61

Query  596  TMTTSVLFADCITVINRYAFITCDFPLILSLEVHCNPEQQLAMVRIMKDTFKERLVLEPL  655
            T+T+ + F D +  I  YAF+T  +P+ILSLE HC+PEQQ  M  I+K+ F + L   PL
Sbjct  62   TLTSKIPFRDVLEAIKDYAFVTSPYPVILSLENHCSPEQQKKMAEILKEIFGDMLYTPPL  121

Query  656  LTNSFVLPSPEELKGRILVKV  676
              +   LPSPE+LKG+IL+K 
Sbjct  122  DDDLTELPSPEDLKGKILIKG  142


>CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase 
C, Y domain.  This associates with pfam00388 to form a single 
structural unit.
Length=114

 Score = 205 bits (523),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 62/116 (53%), Positives = 79/116 (68%), Gaps = 3/116 (3%)

Query  781  LSDLGVYTRGYKWHSFSSPESQRFNHVYSFAERAFESICRDAENKALLERHNQKYLTRVY  840
            LSDL VYT+  K+ SFS+PES+  NH++SF+E     + +   + A   +HN+++L RVY
Sbjct  1    LSDLVVYTQSVKFKSFSTPESKTPNHIFSFSESKALKLIKS--SSAAFVKHNRRHLMRVY  58

Query  841  PSGFRLRSSNFDPLKFWRRGVQMAALNWQTYDIGMQLNQAMFAAGTDRTGYVLKPE  896
            P G R+ SSNF+P  FW  GVQM ALNWQT D GMQLN+ MF A     GYVLKPE
Sbjct  59   PKGTRVDSSNFNPQPFWNCGVQMVALNWQTPDEGMQLNEGMF-ADNGGCGYVLKPE  113



Lambda      K        H        a         alpha
   0.316    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1463257424


Query= TCONS_00002262

Length=1145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific pho...  249     1e-77
CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific pho...  205     3e-62


>CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific phospholipase 
C, X domain.  This associates with pfam00387 to form a single 
structural unit.
Length=142

 Score = 249 bits (638),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 80/141 (57%), Positives = 101/141 (72%), Gaps = 0/141 (0%)

Query  536  DRPLNEYFISSSHNTYLLGRQVAGASSTEAYISALSQGCRCVEIDCWDGADGRPIVSHGR  595
             +PL+ YFISSSHNTYL G Q+ G SS EAYI AL +GCRCVE+DCWDG DG P+V HG 
Sbjct  2    SQPLSHYFISSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGY  61

Query  596  TMTTSVLFADCITVINRYAFITCDFPLILSLEVHCNPEQQLAMVRIMKDTFKERLVLEPL  655
            T+T+ + F D +  I  YAF+T  +P+ILSLE HC+PEQQ  M  I+K+ F + L   PL
Sbjct  62   TLTSKIPFRDVLEAIKDYAFVTSPYPVILSLENHCSPEQQKKMAEILKEIFGDMLYTPPL  121

Query  656  LTNSFVLPSPEELKGRILVKV  676
              +   LPSPE+LKG+IL+K 
Sbjct  122  DDDLTELPSPEDLKGKILIKG  142


>CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase 
C, Y domain.  This associates with pfam00388 to form a single 
structural unit.
Length=114

 Score = 205 bits (523),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 62/116 (53%), Positives = 79/116 (68%), Gaps = 3/116 (3%)

Query  781  LSDLGVYTRGYKWHSFSSPESQRFNHVYSFAERAFESICRDAENKALLERHNQKYLTRVY  840
            LSDL VYT+  K+ SFS+PES+  NH++SF+E     + +   + A   +HN+++L RVY
Sbjct  1    LSDLVVYTQSVKFKSFSTPESKTPNHIFSFSESKALKLIKS--SSAAFVKHNRRHLMRVY  58

Query  841  PSGFRLRSSNFDPLKFWRRGVQMAALNWQTYDIGMQLNQAMFAAGTDRTGYVLKPE  896
            P G R+ SSNF+P  FW  GVQM ALNWQT D GMQLN+ MF A     GYVLKPE
Sbjct  59   PKGTRVDSSNFNPQPFWNCGVQMVALNWQTPDEGMQLNEGMF-ADNGGCGYVLKPE  113



Lambda      K        H        a         alpha
   0.316    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1463257424


Query= TCONS_00007627

Length=26


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82037150


Query= TCONS_00007629

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00007628

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00007632

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00007631

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00007630

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00007633

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00007634

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00007635

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00002265

Length=1145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific pho...  249     1e-77
CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific pho...  205     3e-62


>CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific phospholipase 
C, X domain.  This associates with pfam00387 to form a single 
structural unit.
Length=142

 Score = 249 bits (638),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 80/141 (57%), Positives = 101/141 (72%), Gaps = 0/141 (0%)

Query  536  DRPLNEYFISSSHNTYLLGRQVAGASSTEAYISALSQGCRCVEIDCWDGADGRPIVSHGR  595
             +PL+ YFISSSHNTYL G Q+ G SS EAYI AL +GCRCVE+DCWDG DG P+V HG 
Sbjct  2    SQPLSHYFISSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGY  61

Query  596  TMTTSVLFADCITVINRYAFITCDFPLILSLEVHCNPEQQLAMVRIMKDTFKERLVLEPL  655
            T+T+ + F D +  I  YAF+T  +P+ILSLE HC+PEQQ  M  I+K+ F + L   PL
Sbjct  62   TLTSKIPFRDVLEAIKDYAFVTSPYPVILSLENHCSPEQQKKMAEILKEIFGDMLYTPPL  121

Query  656  LTNSFVLPSPEELKGRILVKV  676
              +   LPSPE+LKG+IL+K 
Sbjct  122  DDDLTELPSPEDLKGKILIKG  142


>CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase 
C, Y domain.  This associates with pfam00388 to form a single 
structural unit.
Length=114

 Score = 205 bits (523),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 62/116 (53%), Positives = 79/116 (68%), Gaps = 3/116 (3%)

Query  781  LSDLGVYTRGYKWHSFSSPESQRFNHVYSFAERAFESICRDAENKALLERHNQKYLTRVY  840
            LSDL VYT+  K+ SFS+PES+  NH++SF+E     + +   + A   +HN+++L RVY
Sbjct  1    LSDLVVYTQSVKFKSFSTPESKTPNHIFSFSESKALKLIKS--SSAAFVKHNRRHLMRVY  58

Query  841  PSGFRLRSSNFDPLKFWRRGVQMAALNWQTYDIGMQLNQAMFAAGTDRTGYVLKPE  896
            P G R+ SSNF+P  FW  GVQM ALNWQT D GMQLN+ MF A     GYVLKPE
Sbjct  59   PKGTRVDSSNFNPQPFWNCGVQMVALNWQTPDEGMQLNEGMF-ADNGGCGYVLKPE  113



Lambda      K        H        a         alpha
   0.316    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1463257424


Query= TCONS_00007636

Length=1145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific pho...  249     1e-77
CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific pho...  205     3e-62


>CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific phospholipase 
C, X domain.  This associates with pfam00387 to form a single 
structural unit.
Length=142

 Score = 249 bits (638),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 80/141 (57%), Positives = 101/141 (72%), Gaps = 0/141 (0%)

Query  536  DRPLNEYFISSSHNTYLLGRQVAGASSTEAYISALSQGCRCVEIDCWDGADGRPIVSHGR  595
             +PL+ YFISSSHNTYL G Q+ G SS EAYI AL +GCRCVE+DCWDG DG P+V HG 
Sbjct  2    SQPLSHYFISSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGY  61

Query  596  TMTTSVLFADCITVINRYAFITCDFPLILSLEVHCNPEQQLAMVRIMKDTFKERLVLEPL  655
            T+T+ + F D +  I  YAF+T  +P+ILSLE HC+PEQQ  M  I+K+ F + L   PL
Sbjct  62   TLTSKIPFRDVLEAIKDYAFVTSPYPVILSLENHCSPEQQKKMAEILKEIFGDMLYTPPL  121

Query  656  LTNSFVLPSPEELKGRILVKV  676
              +   LPSPE+LKG+IL+K 
Sbjct  122  DDDLTELPSPEDLKGKILIKG  142


>CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase 
C, Y domain.  This associates with pfam00388 to form a single 
structural unit.
Length=114

 Score = 205 bits (523),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 62/116 (53%), Positives = 79/116 (68%), Gaps = 3/116 (3%)

Query  781  LSDLGVYTRGYKWHSFSSPESQRFNHVYSFAERAFESICRDAENKALLERHNQKYLTRVY  840
            LSDL VYT+  K+ SFS+PES+  NH++SF+E     + +   + A   +HN+++L RVY
Sbjct  1    LSDLVVYTQSVKFKSFSTPESKTPNHIFSFSESKALKLIKS--SSAAFVKHNRRHLMRVY  58

Query  841  PSGFRLRSSNFDPLKFWRRGVQMAALNWQTYDIGMQLNQAMFAAGTDRTGYVLKPE  896
            P G R+ SSNF+P  FW  GVQM ALNWQT D GMQLN+ MF A     GYVLKPE
Sbjct  59   PKGTRVDSSNFNPQPFWNCGVQMVALNWQTPDEGMQLNEGMF-ADNGGCGYVLKPE  113



Lambda      K        H        a         alpha
   0.316    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1463257424


Query= TCONS_00007637

Length=1145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific pho...  249     1e-77
CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific pho...  205     3e-62


>CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific phospholipase 
C, X domain.  This associates with pfam00387 to form a single 
structural unit.
Length=142

 Score = 249 bits (638),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 80/141 (57%), Positives = 101/141 (72%), Gaps = 0/141 (0%)

Query  536  DRPLNEYFISSSHNTYLLGRQVAGASSTEAYISALSQGCRCVEIDCWDGADGRPIVSHGR  595
             +PL+ YFISSSHNTYL G Q+ G SS EAYI AL +GCRCVE+DCWDG DG P+V HG 
Sbjct  2    SQPLSHYFISSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGY  61

Query  596  TMTTSVLFADCITVINRYAFITCDFPLILSLEVHCNPEQQLAMVRIMKDTFKERLVLEPL  655
            T+T+ + F D +  I  YAF+T  +P+ILSLE HC+PEQQ  M  I+K+ F + L   PL
Sbjct  62   TLTSKIPFRDVLEAIKDYAFVTSPYPVILSLENHCSPEQQKKMAEILKEIFGDMLYTPPL  121

Query  656  LTNSFVLPSPEELKGRILVKV  676
              +   LPSPE+LKG+IL+K 
Sbjct  122  DDDLTELPSPEDLKGKILIKG  142


>CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase 
C, Y domain.  This associates with pfam00388 to form a single 
structural unit.
Length=114

 Score = 205 bits (523),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 62/116 (53%), Positives = 79/116 (68%), Gaps = 3/116 (3%)

Query  781  LSDLGVYTRGYKWHSFSSPESQRFNHVYSFAERAFESICRDAENKALLERHNQKYLTRVY  840
            LSDL VYT+  K+ SFS+PES+  NH++SF+E     + +   + A   +HN+++L RVY
Sbjct  1    LSDLVVYTQSVKFKSFSTPESKTPNHIFSFSESKALKLIKS--SSAAFVKHNRRHLMRVY  58

Query  841  PSGFRLRSSNFDPLKFWRRGVQMAALNWQTYDIGMQLNQAMFAAGTDRTGYVLKPE  896
            P G R+ SSNF+P  FW  GVQM ALNWQT D GMQLN+ MF A     GYVLKPE
Sbjct  59   PKGTRVDSSNFNPQPFWNCGVQMVALNWQTPDEGMQLNEGMF-ADNGGCGYVLKPE  113



Lambda      K        H        a         alpha
   0.316    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1463257424


Query= TCONS_00007639

Length=1145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific pho...  249     1e-77
CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific pho...  205     3e-62


>CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific phospholipase 
C, X domain.  This associates with pfam00387 to form a single 
structural unit.
Length=142

 Score = 249 bits (638),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 80/141 (57%), Positives = 101/141 (72%), Gaps = 0/141 (0%)

Query  536  DRPLNEYFISSSHNTYLLGRQVAGASSTEAYISALSQGCRCVEIDCWDGADGRPIVSHGR  595
             +PL+ YFISSSHNTYL G Q+ G SS EAYI AL +GCRCVE+DCWDG DG P+V HG 
Sbjct  2    SQPLSHYFISSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGY  61

Query  596  TMTTSVLFADCITVINRYAFITCDFPLILSLEVHCNPEQQLAMVRIMKDTFKERLVLEPL  655
            T+T+ + F D +  I  YAF+T  +P+ILSLE HC+PEQQ  M  I+K+ F + L   PL
Sbjct  62   TLTSKIPFRDVLEAIKDYAFVTSPYPVILSLENHCSPEQQKKMAEILKEIFGDMLYTPPL  121

Query  656  LTNSFVLPSPEELKGRILVKV  676
              +   LPSPE+LKG+IL+K 
Sbjct  122  DDDLTELPSPEDLKGKILIKG  142


>CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase 
C, Y domain.  This associates with pfam00388 to form a single 
structural unit.
Length=114

 Score = 205 bits (523),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 62/116 (53%), Positives = 79/116 (68%), Gaps = 3/116 (3%)

Query  781  LSDLGVYTRGYKWHSFSSPESQRFNHVYSFAERAFESICRDAENKALLERHNQKYLTRVY  840
            LSDL VYT+  K+ SFS+PES+  NH++SF+E     + +   + A   +HN+++L RVY
Sbjct  1    LSDLVVYTQSVKFKSFSTPESKTPNHIFSFSESKALKLIKS--SSAAFVKHNRRHLMRVY  58

Query  841  PSGFRLRSSNFDPLKFWRRGVQMAALNWQTYDIGMQLNQAMFAAGTDRTGYVLKPE  896
            P G R+ SSNF+P  FW  GVQM ALNWQT D GMQLN+ MF A     GYVLKPE
Sbjct  59   PKGTRVDSSNFNPQPFWNCGVQMVALNWQTPDEGMQLNEGMF-ADNGGCGYVLKPE  113



Lambda      K        H        a         alpha
   0.316    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1463257424


Query= TCONS_00007638

Length=1145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific pho...  249     1e-77
CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific pho...  205     3e-62


>CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific phospholipase 
C, X domain.  This associates with pfam00387 to form a single 
structural unit.
Length=142

 Score = 249 bits (638),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 80/141 (57%), Positives = 101/141 (72%), Gaps = 0/141 (0%)

Query  536  DRPLNEYFISSSHNTYLLGRQVAGASSTEAYISALSQGCRCVEIDCWDGADGRPIVSHGR  595
             +PL+ YFISSSHNTYL G Q+ G SS EAYI AL +GCRCVE+DCWDG DG P+V HG 
Sbjct  2    SQPLSHYFISSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGY  61

Query  596  TMTTSVLFADCITVINRYAFITCDFPLILSLEVHCNPEQQLAMVRIMKDTFKERLVLEPL  655
            T+T+ + F D +  I  YAF+T  +P+ILSLE HC+PEQQ  M  I+K+ F + L   PL
Sbjct  62   TLTSKIPFRDVLEAIKDYAFVTSPYPVILSLENHCSPEQQKKMAEILKEIFGDMLYTPPL  121

Query  656  LTNSFVLPSPEELKGRILVKV  676
              +   LPSPE+LKG+IL+K 
Sbjct  122  DDDLTELPSPEDLKGKILIKG  142


>CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase 
C, Y domain.  This associates with pfam00388 to form a single 
structural unit.
Length=114

 Score = 205 bits (523),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 62/116 (53%), Positives = 79/116 (68%), Gaps = 3/116 (3%)

Query  781  LSDLGVYTRGYKWHSFSSPESQRFNHVYSFAERAFESICRDAENKALLERHNQKYLTRVY  840
            LSDL VYT+  K+ SFS+PES+  NH++SF+E     + +   + A   +HN+++L RVY
Sbjct  1    LSDLVVYTQSVKFKSFSTPESKTPNHIFSFSESKALKLIKS--SSAAFVKHNRRHLMRVY  58

Query  841  PSGFRLRSSNFDPLKFWRRGVQMAALNWQTYDIGMQLNQAMFAAGTDRTGYVLKPE  896
            P G R+ SSNF+P  FW  GVQM ALNWQT D GMQLN+ MF A     GYVLKPE
Sbjct  59   PKGTRVDSSNFNPQPFWNCGVQMVALNWQTPDEGMQLNEGMF-ADNGGCGYVLKPE  113



Lambda      K        H        a         alpha
   0.316    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1463257424


Query= TCONS_00007640

Length=1145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific pho...  249     1e-77
CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific pho...  205     3e-62


>CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific phospholipase 
C, X domain.  This associates with pfam00387 to form a single 
structural unit.
Length=142

 Score = 249 bits (638),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 80/141 (57%), Positives = 101/141 (72%), Gaps = 0/141 (0%)

Query  536  DRPLNEYFISSSHNTYLLGRQVAGASSTEAYISALSQGCRCVEIDCWDGADGRPIVSHGR  595
             +PL+ YFISSSHNTYL G Q+ G SS EAYI AL +GCRCVE+DCWDG DG P+V HG 
Sbjct  2    SQPLSHYFISSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGY  61

Query  596  TMTTSVLFADCITVINRYAFITCDFPLILSLEVHCNPEQQLAMVRIMKDTFKERLVLEPL  655
            T+T+ + F D +  I  YAF+T  +P+ILSLE HC+PEQQ  M  I+K+ F + L   PL
Sbjct  62   TLTSKIPFRDVLEAIKDYAFVTSPYPVILSLENHCSPEQQKKMAEILKEIFGDMLYTPPL  121

Query  656  LTNSFVLPSPEELKGRILVKV  676
              +   LPSPE+LKG+IL+K 
Sbjct  122  DDDLTELPSPEDLKGKILIKG  142


>CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase 
C, Y domain.  This associates with pfam00388 to form a single 
structural unit.
Length=114

 Score = 205 bits (523),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 62/116 (53%), Positives = 79/116 (68%), Gaps = 3/116 (3%)

Query  781  LSDLGVYTRGYKWHSFSSPESQRFNHVYSFAERAFESICRDAENKALLERHNQKYLTRVY  840
            LSDL VYT+  K+ SFS+PES+  NH++SF+E     + +   + A   +HN+++L RVY
Sbjct  1    LSDLVVYTQSVKFKSFSTPESKTPNHIFSFSESKALKLIKS--SSAAFVKHNRRHLMRVY  58

Query  841  PSGFRLRSSNFDPLKFWRRGVQMAALNWQTYDIGMQLNQAMFAAGTDRTGYVLKPE  896
            P G R+ SSNF+P  FW  GVQM ALNWQT D GMQLN+ MF A     GYVLKPE
Sbjct  59   PKGTRVDSSNFNPQPFWNCGVQMVALNWQTPDEGMQLNEGMF-ADNGGCGYVLKPE  113



Lambda      K        H        a         alpha
   0.316    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0752    0.140     1.90     42.6     43.6 

Effective search space used: 1463257424


Query= TCONS_00007641

Length=1145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific pho...  249     1e-77
CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific pho...  205     3e-62


>CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific phospholipase 
C, X domain.  This associates with pfam00387 to form a single 
structural unit.
Length=142

 Score = 249 bits (638),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 80/141 (57%), Positives = 101/141 (72%), Gaps = 0/141 (0%)

Query  536  DRPLNEYFISSSHNTYLLGRQVAGASSTEAYISALSQGCRCVEIDCWDGADGRPIVSHGR  595
             +PL+ YFISSSHNTYL G Q+ G SS EAYI AL +GCRCVE+DCWDG DG P+V HG 
Sbjct  2    SQPLSHYFISSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGY  61

Query  596  TMTTSVLFADCITVINRYAFITCDFPLILSLEVHCNPEQQLAMVRIMKDTFKERLVLEPL  655
            T+T+ + F D +  I  YAF+T  +P+ILSLE HC+PEQQ  M  I+K+ F + L   PL
Sbjct  62   TLTSKIPFRDVLEAIKDYAFVTSPYPVILSLENHCSPEQQKKMAEILKEIFGDMLYTPPL  121

Query  656  LTNSFVLPSPEELKGRILVKV  676
              +   LPSPE+LKG+IL+K 
Sbjct  122  DDDLTELPSPEDLKGKILIKG  142


>CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase 
C, Y domain.  This associates with pfam00388 to form a single 
structural unit.
Length=114

 Score = 205 bits (523),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 62/116 (53%), Positives = 79/116 (68%), Gaps = 3/116 (3%)

Query  781  LSDLGVYTRGYKWHSFSSPESQRFNHVYSFAERAFESICRDAENKALLERHNQKYLTRVY  840
            LSDL VYT+  K+ SFS+PES+  NH++SF+E     + +   + A   +HN+++L RVY
Sbjct  1    LSDLVVYTQSVKFKSFSTPESKTPNHIFSFSESKALKLIKS--SSAAFVKHNRRHLMRVY  58

Query  841  PSGFRLRSSNFDPLKFWRRGVQMAALNWQTYDIGMQLNQAMFAAGTDRTGYVLKPE  896
            P G R+ SSNF+P  FW  GVQM ALNWQT D GMQLN+ MF A     GYVLKPE
Sbjct  59   PKGTRVDSSNFNPQPFWNCGVQMVALNWQTPDEGMQLNEGMF-ADNGGCGYVLKPE  113



Lambda      K        H        a         alpha
   0.316    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1463257424


Query= TCONS_00002266

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398419 pfam04733, Coatomer_E, Coatomer epsilon subunit. This ...  110     2e-29


>CDD:398419 pfam04733, Coatomer_E, Coatomer epsilon subunit.  This family 
represents the epsilon subunit of the coatomer complex, which 
is involved in the regulation of intracellular protein trafficking 
between the endoplasmic reticulum and the Golgi complex.
Length=288

 Score = 110 bits (276),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 56/176 (32%), Positives = 96/176 (55%), Gaps = 8/176 (5%)

Query  9    ELINIHNAFHQGQYQNVI-DFDTSALSPDNHLTARILQLRAQLALGQTAEVLSAVEGEEE  67
            EL N+ N F+ G YQ  I + D ++LS +  +   +   R+ LALG    V+S  E +E 
Sbjct  2    ELFNVRNYFYLGNYQKAINESDVTSLSEEALVERDVYMYRSYLALGSYQIVIS--EIKES  59

Query  68   KNPDLAAVKALAQLTAGDA--ESAL-QLTQELA-ENYPENASVQVLGGTVLQAQGRSEEA  123
                L AV+ LA+     +  ES L  L + +A  +   N+++++L   +   +G  ++A
Sbjct  60   AATPLQAVRLLAEYLNSPSRKESILASLKEWVADSHIGSNSTLRLLAAIIFIHEGDFDDA  119

Query  124  LAVLTKHQGNLEAVALIVQIHLQQNRVDLALKEVQAAKRWAQDSLLVNLAESWVGM  179
            L        NLEA+AL VQI L+ +R+DLA ++++  ++  +D+ L  LA +WV +
Sbjct  120  LK-HLHKGENLEAMALNVQILLKMHRIDLAEQQLKKMQQIDEDATLTQLANAWVKL  174



Lambda      K        H        a         alpha
   0.323    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00002267

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398419 pfam04733, Coatomer_E, Coatomer epsilon subunit. This ...  170     4e-52


>CDD:398419 pfam04733, Coatomer_E, Coatomer epsilon subunit.  This family 
represents the epsilon subunit of the coatomer complex, which 
is involved in the regulation of intracellular protein trafficking 
between the endoplasmic reticulum and the Golgi complex.
Length=288

 Score = 170 bits (433),  Expect = 4e-52, Method: Composition-based stats.
 Identities = 100/291 (34%), Positives = 162/291 (56%), Gaps = 12/291 (4%)

Query  9    ELINIHNAFHQGQYQNVI-DFDTSALSPDNHLTARILQLRAQLALGQTAEVLSAVEGEEE  67
            EL N+ N F+ G YQ  I + D ++LS +  +   +   R+ LALG    V+S  E +E 
Sbjct  2    ELFNVRNYFYLGNYQKAINESDVTSLSEEALVERDVYMYRSYLALGSYQIVIS--EIKES  59

Query  68   KNPDLAAVKALAQLTAGDA--ESAL-QLTQELA-ENYPENASVQVLGGTVLQAQGRSEEA  123
                L AV+ LA+     +  ES L  L + +A  +   N+++++L   +   +G  ++A
Sbjct  60   AATPLQAVRLLAEYLNSPSRKESILASLKEWVADSHIGSNSTLRLLAAIIFIHEGDFDDA  119

Query  124  LAVLTKHQGNLEAVALIVQIHLQQNRVDLALKEVQAAKRWAQDSLLVNLAESWVGMRIGG  183
            L        NLEA+AL VQI L+ +R+DLA ++++  ++  +D+ L  LA +WV + +GG
Sbjct  120  LK-HLHKGENLEAMALNVQILLKMHRIDLAEQQLKKMQQIDEDATLTQLANAWVKLAVGG  178

Query  184  EKYQSAFYVYEELASAPGTSAPLSIVGQAVAEIHLGRLPEAEAALSAALEKYPEEAELIA  243
            EK Q A+Y+++E +     S PL + GQAV  + LGR  EAE+ L  AL+K  ++ E + 
Sbjct  179  EKIQDAYYIFQEFSEKYD-STPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDPETLI  237

Query  244  NAIVLNVLAGKPTEELE---SRLQQVQPSHALLADIQEKSELFDTAASKYA  291
            N +V  +  GKP E      S+L+   P+H L+ D+ EK   FD A  ++A
Sbjct  238  NLVVCALHLGKPAEVSNRNLSQLKLSHPTHPLVKDLNEKEAEFDRAVQQFA  288



Lambda      K        H        a         alpha
   0.311    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00007642

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398419 pfam04733, Coatomer_E, Coatomer epsilon subunit. This ...  100     1e-26


>CDD:398419 pfam04733, Coatomer_E, Coatomer epsilon subunit.  This family 
represents the epsilon subunit of the coatomer complex, which 
is involved in the regulation of intracellular protein trafficking 
between the endoplasmic reticulum and the Golgi complex.
Length=288

 Score = 100 bits (251),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 56/176 (32%), Positives = 96/176 (55%), Gaps = 8/176 (5%)

Query  9    ELINIHNAFHQGQYQNVI-DFDTSALSPDNHLTARILQLRAQLALGQTAEVLSAVEGEEE  67
            EL N+ N F+ G YQ  I + D ++LS +  +   +   R+ LALG    V+S  E +E 
Sbjct  2    ELFNVRNYFYLGNYQKAINESDVTSLSEEALVERDVYMYRSYLALGSYQIVIS--EIKES  59

Query  68   KNPDLAAVKALAQLTAGDA--ESAL-QLTQELA-ENYPENASVQVLGGTVLQAQGRSEEA  123
                L AV+ LA+     +  ES L  L + +A  +   N+++++L   +   +G  ++A
Sbjct  60   AATPLQAVRLLAEYLNSPSRKESILASLKEWVADSHIGSNSTLRLLAAIIFIHEGDFDDA  119

Query  124  LAVLTKHQGNLEAVALIVQIHLQQNRVDLALKEVQAAKRWAQDSLLVNLAESWVGM  179
            L        NLEA+AL VQI L+ +R+DLA ++++  ++  +D+ L  LA +WV +
Sbjct  120  LK-HLHKGENLEAMALNVQILLKMHRIDLAEQQLKKMQQIDEDATLTQLANAWVKL  174



Lambda      K        H        a         alpha
   0.313    0.127    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00002268

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466661 pfam20512, PMI_typeI_hel, Phosphomannose isomerase typ...  77.5    1e-18
CDD:460127 pfam01238, PMI_typeI, Phosphomannose isomerase type I....  54.7    9e-11


>CDD:466661 pfam20512, PMI_typeI_hel, Phosphomannose isomerase type I, helical 
insertion domain.  This entry represents the alpha-helical 
insertion domain of Phosphomannose isomerase type I enzymes 
(EC 5.3.1.8), in which the helices are packed closely, 
connected by short turns and loops. This domain packs closely 
against the catalytic domain, interrupting it.
Length=88

 Score = 77.5 bits (191),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 18/106 (17%)

Query  33   LVGERAASEFENTVKGSEESEDPAVTEKNKQALRTLFTSLMRSSPESIEAATKELVAIAQ  92
            L+GE AA+ F + +   E        +  ++ L+ LF+SLM S  E I+    +LV   Q
Sbjct  1    LIGEEAATHFISAISLQEP-------DAEQKLLQKLFSSLMNSQKEKIKIQLAKLVERIQ  53

Query  93   NSPETFTTSSSTPETNPTNPAELAAITVRLNGQFPNDIGSFVFFFL  138
            + P  F                L  +  RLN Q+P DIG F   FL
Sbjct  54   SQPSEFN-----------KTDALPELIQRLNEQYPGDIGLFAPLFL  88


>CDD:460127 pfam01238, PMI_typeI, Phosphomannose isomerase type I.  This 
is a family of Phosphomannose isomerase type I enzymes (EC 5.3.1.8).
Length=48

 Score = 54.7 bits (132),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 21/47 (45%), Positives = 29/47 (62%), Gaps = 2/47 (4%)

Query  227  ILYDPPIEEFSVVKTDLKRQGAKATFDGISGPSIVICTAGAGKITVG  273
            +LYDPPI+EF+V++T L       T   ++ PSI+ICT G G I   
Sbjct  2    VLYDPPIDEFAVLQTKLP--KGDHTILPLTSPSILICTEGTGTIIAS  46



Lambda      K        H        a         alpha
   0.316    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00002269

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466661 pfam20512, PMI_typeI_hel, Phosphomannose isomerase typ...  77.5    1e-18
CDD:460127 pfam01238, PMI_typeI, Phosphomannose isomerase type I....  54.7    9e-11


>CDD:466661 pfam20512, PMI_typeI_hel, Phosphomannose isomerase type I, helical 
insertion domain.  This entry represents the alpha-helical 
insertion domain of Phosphomannose isomerase type I enzymes 
(EC 5.3.1.8), in which the helices are packed closely, 
connected by short turns and loops. This domain packs closely 
against the catalytic domain, interrupting it.
Length=88

 Score = 77.5 bits (191),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 18/106 (17%)

Query  33   LVGERAASEFENTVKGSEESEDPAVTEKNKQALRTLFTSLMRSSPESIEAATKELVAIAQ  92
            L+GE AA+ F + +   E        +  ++ L+ LF+SLM S  E I+    +LV   Q
Sbjct  1    LIGEEAATHFISAISLQEP-------DAEQKLLQKLFSSLMNSQKEKIKIQLAKLVERIQ  53

Query  93   NSPETFTTSSSTPETNPTNPAELAAITVRLNGQFPNDIGSFVFFFL  138
            + P  F                L  +  RLN Q+P DIG F   FL
Sbjct  54   SQPSEFN-----------KTDALPELIQRLNEQYPGDIGLFAPLFL  88


>CDD:460127 pfam01238, PMI_typeI, Phosphomannose isomerase type I.  This 
is a family of Phosphomannose isomerase type I enzymes (EC 5.3.1.8).
Length=48

 Score = 54.7 bits (132),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 21/47 (45%), Positives = 29/47 (62%), Gaps = 2/47 (4%)

Query  227  ILYDPPIEEFSVVKTDLKRQGAKATFDGISGPSIVICTAGAGKITVG  273
            +LYDPPI+EF+V++T L       T   ++ PSI+ICT G G I   
Sbjct  2    VLYDPPIDEFAVLQTKLP--KGDHTILPLTSPSILICTEGTGTIIAS  46



Lambda      K        H        a         alpha
   0.316    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00002270

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398419 pfam04733, Coatomer_E, Coatomer epsilon subunit. This ...  159     5e-48


>CDD:398419 pfam04733, Coatomer_E, Coatomer epsilon subunit.  This family 
represents the epsilon subunit of the coatomer complex, which 
is involved in the regulation of intracellular protein trafficking 
between the endoplasmic reticulum and the Golgi complex.
Length=288

 Score = 159 bits (403),  Expect = 5e-48, Method: Composition-based stats.
 Identities = 89/261 (34%), Positives = 145/261 (56%), Gaps = 9/261 (3%)

Query  9    ELINIHNAFHQGQYQNVI-DFDTSALSPDNHLTARILQLRAQLALGQTAEVLSAVEGEEE  67
            EL N+ N F+ G YQ  I + D ++LS +  +   +   R+ LALG    V+S  E +E 
Sbjct  2    ELFNVRNYFYLGNYQKAINESDVTSLSEEALVERDVYMYRSYLALGSYQIVIS--EIKES  59

Query  68   KNPDLAAVKALAQLTAGDA--ESAL-QLTQELA-ENYPENASVQVLGGTVLQAQGRSEEA  123
                L AV+ LA+     +  ES L  L + +A  +   N+++++L   +   +G  ++A
Sbjct  60   AATPLQAVRLLAEYLNSPSRKESILASLKEWVADSHIGSNSTLRLLAAIIFIHEGDFDDA  119

Query  124  LAVLTKHQGNLEAVALIVQIHLQQNRVDLALKEVQAAKRWAQDSLLVNLAESWVGMRIGG  183
            L        NLEA+AL VQI L+ +R+DLA ++++  ++  +D+ L  LA +WV + +GG
Sbjct  120  LK-HLHKGENLEAMALNVQILLKMHRIDLAEQQLKKMQQIDEDATLTQLANAWVKLAVGG  178

Query  184  EKYQSAFYVYEELASAPGTSAPLSIVGQAVAEIHLGRLPEAEAALSAALEKYPEEAELIA  243
            EK Q A+Y+++E +     S PL + GQAV  + LGR  EAE+ L  AL+K  ++ E + 
Sbjct  179  EKIQDAYYIFQEFSEKYD-STPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDPETLI  237

Query  244  NAIVLNVLAGKPTEELERYIL  264
            N +V  +  GKP E   R + 
Sbjct  238  NLVVCALHLGKPAEVSNRNLS  258



Lambda      K        H        a         alpha
   0.312    0.128    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00002271

Length=118
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398419 pfam04733, Coatomer_E, Coatomer epsilon subunit. This ...  76.0    2e-18


>CDD:398419 pfam04733, Coatomer_E, Coatomer epsilon subunit.  This family 
represents the epsilon subunit of the coatomer complex, which 
is involved in the regulation of intracellular protein trafficking 
between the endoplasmic reticulum and the Golgi complex.
Length=288

 Score = 76.0 bits (187),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 44/113 (39%), Positives = 65/113 (58%), Gaps = 4/113 (4%)

Query  4    GGEKYQSAFYVYEELASAPGTSAPLSIVGQAVAEIHLGRLPEAEAALSAALEKYPEEAEL  63
            GGEK Q A+Y+++E +     S PL + GQAV  + LGR  EAE+ L  AL+K  ++ E 
Sbjct  177  GGEKIQDAYYIFQEFSEKYD-STPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDPET  235

Query  64   IANAIVLNVLAGKPTEELE---SRLQQVQPSHALLADIQEKSELFDTAASKYA  113
            + N +V  +  GKP E      S+L+   P+H L+ D+ EK   FD A  ++A
Sbjct  236  LINLVVCALHLGKPAEVSNRNLSQLKLSHPTHPLVKDLNEKEAEFDRAVQQFA  288



Lambda      K        H        a         alpha
   0.310    0.126    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00002274

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466661 pfam20512, PMI_typeI_hel, Phosphomannose isomerase typ...  77.5    1e-18
CDD:460127 pfam01238, PMI_typeI, Phosphomannose isomerase type I....  54.7    9e-11


>CDD:466661 pfam20512, PMI_typeI_hel, Phosphomannose isomerase type I, helical 
insertion domain.  This entry represents the alpha-helical 
insertion domain of Phosphomannose isomerase type I enzymes 
(EC 5.3.1.8), in which the helices are packed closely, 
connected by short turns and loops. This domain packs closely 
against the catalytic domain, interrupting it.
Length=88

 Score = 77.5 bits (191),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 18/106 (17%)

Query  33   LVGERAASEFENTVKGSEESEDPAVTEKNKQALRTLFTSLMRSSPESIEAATKELVAIAQ  92
            L+GE AA+ F + +   E        +  ++ L+ LF+SLM S  E I+    +LV   Q
Sbjct  1    LIGEEAATHFISAISLQEP-------DAEQKLLQKLFSSLMNSQKEKIKIQLAKLVERIQ  53

Query  93   NSPETFTTSSSTPETNPTNPAELAAITVRLNGQFPNDIGSFVFFFL  138
            + P  F                L  +  RLN Q+P DIG F   FL
Sbjct  54   SQPSEFN-----------KTDALPELIQRLNEQYPGDIGLFAPLFL  88


>CDD:460127 pfam01238, PMI_typeI, Phosphomannose isomerase type I.  This 
is a family of Phosphomannose isomerase type I enzymes (EC 5.3.1.8).
Length=48

 Score = 54.7 bits (132),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 21/47 (45%), Positives = 29/47 (62%), Gaps = 2/47 (4%)

Query  227  ILYDPPIEEFSVVKTDLKRQGAKATFDGISGPSIVICTAGAGKITVG  273
            +LYDPPI+EF+V++T L       T   ++ PSI+ICT G G I   
Sbjct  2    VLYDPPIDEFAVLQTKLP--KGDHTILPLTSPSILICTEGTGTIIAS  46



Lambda      K        H        a         alpha
   0.316    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00007643

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462071 pfam07039, DUF1325, SGF29 tudor-like domain. This doma...  169     3e-53


>CDD:462071 pfam07039, DUF1325, SGF29 tudor-like domain.  This domain is 
found in the yeast protein SAGA-associated factor 29. This domain 
is related to members of the Tudor domain superfamily 
such as pfam05641. The SAGA complex is involved in RNA polymerase 
II-dependent transcriptional regulation. The membership 
of the tudor domain superfamily suggests this domain may bind 
to RNA.
Length=131

 Score = 169 bits (430),  Expect = 3e-53, Method: Composition-based stats.
 Identities = 58/133 (44%), Positives = 74/133 (56%), Gaps = 10/133 (8%)

Query  204  GAEVVFKHNKNKQGVEGEGIQCIIKGISGDGPKKRYDVQDPEPNENGEQGAVYKTTAASL  263
            G EV  K        E E I   +  +  DG   RY+VQD +P+E   Q   YK +   +
Sbjct  2    GDEVAAKVKAKNTDEEEEWILAEV--VKYDGDTNRYEVQDIDPDEGKGQK-RYKLSRKQI  58

Query  264  IPIPQVGSTL---PVFPVGKQVLARYPDTTTFYRAEVMGT---KKDTYRLKFEGEED-DK  316
            IP+P+  +     P+FP G +VLA YPDTTTFYRAEV+     K  TYRLKFE +ED D 
Sbjct  59   IPLPKWKANPSTDPLFPKGTKVLALYPDTTTFYRAEVVSPPKKKDGTYRLKFEDDEDADP  118

Query  317  EMEVDRRFVLDIP  329
              EV RR+V+  P
Sbjct  119  LREVPRRYVVPFP  131



Lambda      K        H        a         alpha
   0.310    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00002273

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462071 pfam07039, DUF1325, SGF29 tudor-like domain. This doma...  172     6e-53


>CDD:462071 pfam07039, DUF1325, SGF29 tudor-like domain.  This domain is 
found in the yeast protein SAGA-associated factor 29. This domain 
is related to members of the Tudor domain superfamily 
such as pfam05641. The SAGA complex is involved in RNA polymerase 
II-dependent transcriptional regulation. The membership 
of the tudor domain superfamily suggests this domain may bind 
to RNA.
Length=131

 Score = 172 bits (439),  Expect = 6e-53, Method: Composition-based stats.
 Identities = 58/133 (44%), Positives = 74/133 (56%), Gaps = 10/133 (8%)

Query  342  GAEVVFKHNKNKQGVEGEGIQCIIKGISGDGPKKRYDVQDPEPNENGEQGAVYKTTAASL  401
            G EV  K        E E I   +  +  DG   RY+VQD +P+E   Q   YK +   +
Sbjct  2    GDEVAAKVKAKNTDEEEEWILAEV--VKYDGDTNRYEVQDIDPDEGKGQK-RYKLSRKQI  58

Query  402  IPIPQVGSTL---PVFPVGKQVLARYPDTTTFYRAEVMGT---KKDTYRLKFEGEED-DK  454
            IP+P+  +     P+FP G +VLA YPDTTTFYRAEV+     K  TYRLKFE +ED D 
Sbjct  59   IPLPKWKANPSTDPLFPKGTKVLALYPDTTTFYRAEVVSPPKKKDGTYRLKFEDDEDADP  118

Query  455  EMEVDRRFVLDIP  467
              EV RR+V+  P
Sbjct  119  LREVPRRYVVPFP  131



Lambda      K        H        a         alpha
   0.309    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581273816


Query= TCONS_00007644

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462071 pfam07039, DUF1325, SGF29 tudor-like domain. This doma...  168     9e-54


>CDD:462071 pfam07039, DUF1325, SGF29 tudor-like domain.  This domain is 
found in the yeast protein SAGA-associated factor 29. This domain 
is related to members of the Tudor domain superfamily 
such as pfam05641. The SAGA complex is involved in RNA polymerase 
II-dependent transcriptional regulation. The membership 
of the tudor domain superfamily suggests this domain may bind 
to RNA.
Length=131

 Score = 168 bits (427),  Expect = 9e-54, Method: Composition-based stats.
 Identities = 58/133 (44%), Positives = 74/133 (56%), Gaps = 10/133 (8%)

Query  126  GAEVVFKHNKNKQGVEGEGIQCIIKGISGDGPKKRYDVQDPEPNENGEQGAVYKTTAASL  185
            G EV  K        E E I   +  +  DG   RY+VQD +P+E   Q   YK +   +
Sbjct  2    GDEVAAKVKAKNTDEEEEWILAEV--VKYDGDTNRYEVQDIDPDEGKGQK-RYKLSRKQI  58

Query  186  IPIPQVGSTL---PVFPVGKQVLARYPDTTTFYRAEVMGT---KKDTYRLKFEGEED-DK  238
            IP+P+  +     P+FP G +VLA YPDTTTFYRAEV+     K  TYRLKFE +ED D 
Sbjct  59   IPLPKWKANPSTDPLFPKGTKVLALYPDTTTFYRAEVVSPPKKKDGTYRLKFEDDEDADP  118

Query  239  EMEVDRRFVLDIP  251
              EV RR+V+  P
Sbjct  119  LREVPRRYVVPFP  131



Lambda      K        H        a         alpha
   0.311    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00002275

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II. GTP...  178     2e-55


>CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II.  GTP cyclohydrolase 
II catalyzes the first committed step in the biosynthesis 
of riboflavin.
Length=123

 Score = 178 bits (453),  Expect = 2e-55, Method: Composition-based stats.
 Identities = 80/150 (53%), Positives = 90/150 (60%), Gaps = 27/150 (18%)

Query  228  VRIHSECYTGETAWSARCDCGEQLDEAARLMSLPMETLAEAASPPDGAVPSNAAGGVIVY  287
            VR+HSEC TG+   S RCDCGEQL+ A       +  +AE               GV+VY
Sbjct  1    VRVHSECLTGDVLGSLRCDCGEQLEAA-------LRAIAEEGR------------GVLVY  41

Query  288  LRQEGRGIGLGEKLKAYNLQDLGSDTVEANLLLRHPADARSYGLATAILVDLGLGIDSNP  347
            LRQEGRGIGL  KL+AY LQD G DTVEANL L  PAD R YG+   IL DLG+      
Sbjct  42   LRQEGRGIGLLNKLRAYALQDQGLDTVEANLALGFPADLRDYGIGAQILRDLGV------  95

Query  348  HGIRLLTNNPDKIRAVEGPNREVVVKERVP  377
              IRLLTNNP KI  +EG   EVV  ERVP
Sbjct  96   KKIRLLTNNPRKIVGLEGYGLEVV--ERVP  123



Lambda      K        H        a         alpha
   0.314    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 533728992


Query= TCONS_00007645

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462071 pfam07039, DUF1325, SGF29 tudor-like domain. This doma...  144     8e-45


>CDD:462071 pfam07039, DUF1325, SGF29 tudor-like domain.  This domain is 
found in the yeast protein SAGA-associated factor 29. This domain 
is related to members of the Tudor domain superfamily 
such as pfam05641. The SAGA complex is involved in RNA polymerase 
II-dependent transcriptional regulation. The membership 
of the tudor domain superfamily suggests this domain may bind 
to RNA.
Length=131

 Score = 144 bits (365),  Expect = 8e-45, Method: Composition-based stats.
 Identities = 54/111 (49%), Positives = 70/111 (63%), Gaps = 8/111 (7%)

Query  114  LSECKKIDPFTSRYDVQDPEPNENGEQGAVYKTTAASLIPIPQVGSTL---PVFPVGKQV  170
            L+E  K D  T+RY+VQD +P+E   Q   YK +   +IP+P+  +     P+FP G +V
Sbjct  22   LAEVVKYDGDTNRYEVQDIDPDEGKGQK-RYKLSRKQIIPLPKWKANPSTDPLFPKGTKV  80

Query  171  LARYPDTTTFYRAEVMGT---KKDTYRLKFEGEED-DKEMEVDRRFVLDIP  217
            LA YPDTTTFYRAEV+     K  TYRLKFE +ED D   EV RR+V+  P
Sbjct  81   LALYPDTTTFYRAEVVSPPKKKDGTYRLKFEDDEDADPLREVPRRYVVPFP  131



Lambda      K        H        a         alpha
   0.316    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00007646

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462071 pfam07039, DUF1325, SGF29 tudor-like domain. This doma...  168     9e-54


>CDD:462071 pfam07039, DUF1325, SGF29 tudor-like domain.  This domain is 
found in the yeast protein SAGA-associated factor 29. This domain 
is related to members of the Tudor domain superfamily 
such as pfam05641. The SAGA complex is involved in RNA polymerase 
II-dependent transcriptional regulation. The membership 
of the tudor domain superfamily suggests this domain may bind 
to RNA.
Length=131

 Score = 168 bits (427),  Expect = 9e-54, Method: Composition-based stats.
 Identities = 58/133 (44%), Positives = 74/133 (56%), Gaps = 10/133 (8%)

Query  126  GAEVVFKHNKNKQGVEGEGIQCIIKGISGDGPKKRYDVQDPEPNENGEQGAVYKTTAASL  185
            G EV  K        E E I   +  +  DG   RY+VQD +P+E   Q   YK +   +
Sbjct  2    GDEVAAKVKAKNTDEEEEWILAEV--VKYDGDTNRYEVQDIDPDEGKGQK-RYKLSRKQI  58

Query  186  IPIPQVGSTL---PVFPVGKQVLARYPDTTTFYRAEVMGT---KKDTYRLKFEGEED-DK  238
            IP+P+  +     P+FP G +VLA YPDTTTFYRAEV+     K  TYRLKFE +ED D 
Sbjct  59   IPLPKWKANPSTDPLFPKGTKVLALYPDTTTFYRAEVVSPPKKKDGTYRLKFEDDEDADP  118

Query  239  EMEVDRRFVLDIP  251
              EV RR+V+  P
Sbjct  119  LREVPRRYVVPFP  131



Lambda      K        H        a         alpha
   0.311    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00007647

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462071 pfam07039, DUF1325, SGF29 tudor-like domain. This doma...  144     8e-45


>CDD:462071 pfam07039, DUF1325, SGF29 tudor-like domain.  This domain is 
found in the yeast protein SAGA-associated factor 29. This domain 
is related to members of the Tudor domain superfamily 
such as pfam05641. The SAGA complex is involved in RNA polymerase 
II-dependent transcriptional regulation. The membership 
of the tudor domain superfamily suggests this domain may bind 
to RNA.
Length=131

 Score = 144 bits (365),  Expect = 8e-45, Method: Composition-based stats.
 Identities = 54/111 (49%), Positives = 70/111 (63%), Gaps = 8/111 (7%)

Query  114  LSECKKIDPFTSRYDVQDPEPNENGEQGAVYKTTAASLIPIPQVGSTL---PVFPVGKQV  170
            L+E  K D  T+RY+VQD +P+E   Q   YK +   +IP+P+  +     P+FP G +V
Sbjct  22   LAEVVKYDGDTNRYEVQDIDPDEGKGQK-RYKLSRKQIIPLPKWKANPSTDPLFPKGTKV  80

Query  171  LARYPDTTTFYRAEVMGT---KKDTYRLKFEGEED-DKEMEVDRRFVLDIP  217
            LA YPDTTTFYRAEV+     K  TYRLKFE +ED D   EV RR+V+  P
Sbjct  81   LALYPDTTTFYRAEVVSPPKKKDGTYRLKFEDDEDADPLREVPRRYVVPFP  131



Lambda      K        H        a         alpha
   0.316    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00002276

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462071 pfam07039, DUF1325, SGF29 tudor-like domain. This doma...  168     9e-54


>CDD:462071 pfam07039, DUF1325, SGF29 tudor-like domain.  This domain is 
found in the yeast protein SAGA-associated factor 29. This domain 
is related to members of the Tudor domain superfamily 
such as pfam05641. The SAGA complex is involved in RNA polymerase 
II-dependent transcriptional regulation. The membership 
of the tudor domain superfamily suggests this domain may bind 
to RNA.
Length=131

 Score = 168 bits (427),  Expect = 9e-54, Method: Composition-based stats.
 Identities = 58/133 (44%), Positives = 74/133 (56%), Gaps = 10/133 (8%)

Query  126  GAEVVFKHNKNKQGVEGEGIQCIIKGISGDGPKKRYDVQDPEPNENGEQGAVYKTTAASL  185
            G EV  K        E E I   +  +  DG   RY+VQD +P+E   Q   YK +   +
Sbjct  2    GDEVAAKVKAKNTDEEEEWILAEV--VKYDGDTNRYEVQDIDPDEGKGQK-RYKLSRKQI  58

Query  186  IPIPQVGSTL---PVFPVGKQVLARYPDTTTFYRAEVMGT---KKDTYRLKFEGEED-DK  238
            IP+P+  +     P+FP G +VLA YPDTTTFYRAEV+     K  TYRLKFE +ED D 
Sbjct  59   IPLPKWKANPSTDPLFPKGTKVLALYPDTTTFYRAEVVSPPKKKDGTYRLKFEDDEDADP  118

Query  239  EMEVDRRFVLDIP  251
              EV RR+V+  P
Sbjct  119  LREVPRRYVVPFP  131



Lambda      K        H        a         alpha
   0.311    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00007648

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459669 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain...  229     3e-74
CDD:397858 pfam03953, Tubulin_C, Tubulin C-terminal domain. This ...  199     1e-63


>CDD:459669 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain.  This 
family includes the tubulin alpha, beta and gamma chains, as 
well as the bacterial FtsZ family of proteins. Members of 
this family are involved in polymer formation. FtsZ is the polymer-forming 
protein of bacterial cell division. It is part 
of a ring in the middle of the dividing cell that is required 
for constriction of cell membrane and cell envelope to yield 
two daughter cells. FtsZ and tubulin are GTPases. FtsZ 
can polymerize into tubes, sheets, and rings in vitro and is 
ubiquitous in eubacteria and archaea. Tubulin is the major 
component of microtubules.
Length=190

 Score = 229 bits (587),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 114/211 (54%), Gaps = 23/211 (11%)

Query  4    EIITIQAGQCGNNVGSQFWQQLCLEHGISQDGNLEEFATEGGDRKDVFFYQSDDTRYIPR  63
            EII I  G  GNN+G+  W+ LCLEHGI              D  +VFF +S    +IPR
Sbjct  1    EIIVIGVGGAGNNIGNALWELLCLEHGI--------------DSLNVFFSESGSVEFIPR  46

Query  64   AILLDLEPRVLNSIQSGPYKNIYNPENFFIGQQGIGAGNNWGAGYA-AGEVVQEEVFDMI  122
            ++ +D +P+ LN I++G     +NP    +G++G   G N   GY   G    EE  + I
Sbjct  47   SLAIDTDPQALNEIKAG-----FNPNKILLGKEG--TGGNGAGGYPEIGREAAEESLEEI  99

Query  123  DREADGSDSLEGFMFLHSIAGGTGSGLGSFILERMNDRFPKKLIQTYSVFPDTQSADVVV  182
             +E +G D L+GF    S+ GGTGSG    I E + + +P  L      FP   S + VV
Sbjct  100  RKEVEGCDMLQGFFITASLGGGTGSGAAPVIAEILKELYPGALTVAVVTFPFGFS-EGVV  158

Query  183  NPYNSLLAMRRLTQNADSVVVLDNGALSRIV  213
             PYN++L ++ L +++DSV+V+DN AL  I 
Sbjct  159  RPYNAILGLKELIEHSDSVIVIDNDALYDIC  189


>CDD:397858 pfam03953, Tubulin_C, Tubulin C-terminal domain.  This family 
includes the tubulin alpha, beta and gamma chains. Members 
of this family are involved in polymer formation. Tubulins are 
GTPases. FtsZ can polymerize into tubes, sheets, and rings 
in vitro and is ubiquitous in eubacteria and archaea. Tubulin 
is the major component of microtubules. (The FtsZ GTPases 
have been split into their won family).
Length=125

 Score = 199 bits (509),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 62/128 (48%), Positives = 87/128 (68%), Gaps = 4/128 (3%)

Query  263  PRSHFLITSYTPFTGDNVDQAKTVRKTTVLDVMRRLLQPKNRMVSINPSKSSCYMSILNI  322
            PR HFL+TSY P T  N     +  KT+VLDV RRL  PKN+MVS +P ++  YM+   +
Sbjct  1    PRLHFLLTSYAPLTSAN---KASHEKTSVLDVTRRLFDPKNQMVSCDP-RNGKYMACALL  56

Query  323  IQGEADPTDVHKSLLRIRERRLASFIPWGPASIQVALTKKSPYIQNTHRVSGLMLANHTS  382
             +G+  P DVH+++ RI+E+R A F+ W P  I+VA+  +SPY+    +VSGLMLAN TS
Sbjct  57   YRGDVSPKDVHRAIQRIKEKRSAQFVEWCPTGIKVAICSQSPYVVPGSKVSGLMLANTTS  116

Query  383  VATLFKRI  390
            +A LF+R+
Sbjct  117  IAELFQRL  124



Lambda      K        H        a         alpha
   0.318    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00002277

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II. GTP...  178     2e-55


>CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II.  GTP cyclohydrolase 
II catalyzes the first committed step in the biosynthesis 
of riboflavin.
Length=123

 Score = 178 bits (453),  Expect = 2e-55, Method: Composition-based stats.
 Identities = 80/150 (53%), Positives = 90/150 (60%), Gaps = 27/150 (18%)

Query  228  VRIHSECYTGETAWSARCDCGEQLDEAARLMSLPMETLAEAASPPDGAVPSNAAGGVIVY  287
            VR+HSEC TG+   S RCDCGEQL+ A       +  +AE               GV+VY
Sbjct  1    VRVHSECLTGDVLGSLRCDCGEQLEAA-------LRAIAEEGR------------GVLVY  41

Query  288  LRQEGRGIGLGEKLKAYNLQDLGSDTVEANLLLRHPADARSYGLATAILVDLGLGIDSNP  347
            LRQEGRGIGL  KL+AY LQD G DTVEANL L  PAD R YG+   IL DLG+      
Sbjct  42   LRQEGRGIGLLNKLRAYALQDQGLDTVEANLALGFPADLRDYGIGAQILRDLGV------  95

Query  348  HGIRLLTNNPDKIRAVEGPNREVVVKERVP  377
              IRLLTNNP KI  +EG   EVV  ERVP
Sbjct  96   KKIRLLTNNPRKIVGLEGYGLEVV--ERVP  123



Lambda      K        H        a         alpha
   0.314    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 533728992


Query= TCONS_00002278

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00002279

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00002280

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394979 pfam00022, Actin, Actin                                    359     7e-123


>CDD:394979 pfam00022, Actin, Actin.  
Length=407

 Score = 359 bits (923),  Expect = 7e-123, Method: Composition-based stats.
 Identities = 145/421 (34%), Positives = 218/421 (52%), Gaps = 60/421 (14%)

Query  5    PIVLDGGTGFLKVGYAAQNFPEHQFPSIVGRPILRTEEQAGDIVVKDIMCGDEAAAARSM  64
             +V+D G+   + G+A ++ P+   PS VG+P                  GDEA   R  
Sbjct  3    ALVIDNGSHTTRAGFAGEDAPKAVIPSCVGKP-----RGTKVEAANKYYVGDEALTYRPG  57

Query  65   LQISYPMENGIVKKWDDMQHLWNYTFYEKMKIDPTGRKILLTEPPMNPLKNREKMCEVML  124
            +++  P+E+GIV  WD M+ +W +   E++++DP    +LLTEPP NP  NREK  E+M 
Sbjct  58   MEVRSPVEDGIVVDWDAMEEIWEHVLKEELQVDPEEHPLLLTEPPWNPPANREKAAEIMF  117

Query  125  EQYNFGGVYVAIQAVLALYAQGLSSGVVVDSGDGVTHIIPVYESTVLKHHIRRLDVAGRD  184
            E++    +Y+A   VL+ +A G ++G+VVDSG GVT ++PV++  VL+  IRR D+ G  
Sbjct  118  EKFGVPALYLAKNPVLSAFASGRTTGLVVDSGAGVTSVVPVHDGYVLQKAIRRSDLGGDF  177

Query  185  VTRNLIALLLRR------------------------------GYALNRTADFETVRQIKE  214
            +T  L  LL  R                               Y+     +   + +IKE
Sbjct  178  LTDYLRELLRSRNIEITPRYLIKSKKPGDPAPAVTKRELPDTTYSYKTYQERRVLEEIKE  237

Query  215  KLCYVSYDLELDKKLSEDTTVLVESYTLPDGRVIRVGSERFEAPECLFQPHLVDVDQP--  272
             +CYVS D   D+  S  +++    Y LPDG  I +G+ERF  PE LF P L+  +    
Sbjct  238  SVCYVSDDPFGDETTS--SSIPTRVYELPDGSTIILGAERFRVPEILFNPSLIGSESELP  295

Query  273  ------GMAELLFNTIQGADVDVRSSLYKAIVLSGGSSMYPGLPSRLEKELKQLWLTRVL  326
                  G+ EL+ + I   DVD+R SL   IV++GG+S++PG   RLEKEL QL    V 
Sbjct  296  PPQTAVGIPELIVDAINACDVDLRPSLLANIVVTGGNSLFPGFTERLEKELAQLAPPGV-  354

Query  327  QGDPERLGKFKVRI---EDPPRRRHMVFLGGAVLANLIADKEDMWVSKQEWEEQGVRALA  383
                      KV+I    +   RR+  ++GG++LA+L    + MWVSKQE+EE G   + 
Sbjct  355  ----------KVKIIAPGNTVERRYSAWIGGSILASL-GTFQQMWVSKQEYEEHGASVVE  403

Query  384  K  384
            +
Sbjct  404  R  404



Lambda      K        H        a         alpha
   0.320    0.138    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00007649

Length=329


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 385413556


Query= TCONS_00002282

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394979 pfam00022, Actin, Actin                                    357     3e-122


>CDD:394979 pfam00022, Actin, Actin.  
Length=407

 Score = 357 bits (919),  Expect = 3e-122, Method: Composition-based stats.
 Identities = 145/421 (34%), Positives = 218/421 (52%), Gaps = 60/421 (14%)

Query  5    PIVLDGGTGFLKVGYAAQNFPEHQFPSIVGRPILRTEEQAGDIVVKDIMCGDEAAAARSM  64
             +V+D G+   + G+A ++ P+   PS VG+P                  GDEA   R  
Sbjct  3    ALVIDNGSHTTRAGFAGEDAPKAVIPSCVGKP-----RGTKVEAANKYYVGDEALTYRPG  57

Query  65   LQISYPMENGIVKKWDDMQHLWNYTFYEKMKIDPTGRKILLTEPPMNPLKNREKMCEVML  124
            +++  P+E+GIV  WD M+ +W +   E++++DP    +LLTEPP NP  NREK  E+M 
Sbjct  58   MEVRSPVEDGIVVDWDAMEEIWEHVLKEELQVDPEEHPLLLTEPPWNPPANREKAAEIMF  117

Query  125  EQYNFGGVYVAIQAVLALYAQGLSSGVVVDSGDGVTHIIPVYESTVLKHHIRRLDVAGRD  184
            E++    +Y+A   VL+ +A G ++G+VVDSG GVT ++PV++  VL+  IRR D+ G  
Sbjct  118  EKFGVPALYLAKNPVLSAFASGRTTGLVVDSGAGVTSVVPVHDGYVLQKAIRRSDLGGDF  177

Query  185  VTRNLIALLLRR------------------------------GYALNRTADFETVRQIKE  214
            +T  L  LL  R                               Y+     +   + +IKE
Sbjct  178  LTDYLRELLRSRNIEITPRYLIKSKKPGDPAPAVTKRELPDTTYSYKTYQERRVLEEIKE  237

Query  215  KLCYVSYDLELDKKLSEDTTVLVESYTLPDGRVIRVGSERFEAPECLFQPHLVDVDQP--  272
             +CYVS D   D+  S  +++    Y LPDG  I +G+ERF  PE LF P L+  +    
Sbjct  238  SVCYVSDDPFGDETTS--SSIPTRVYELPDGSTIILGAERFRVPEILFNPSLIGSESELP  295

Query  273  ------GMAELLFNTIQGADVDVRSSLYKAIVLSGGSSMYPGLPSRLEKELKQLWLTRVL  326
                  G+ EL+ + I   DVD+R SL   IV++GG+S++PG   RLEKEL QL    V 
Sbjct  296  PPQTAVGIPELIVDAINACDVDLRPSLLANIVVTGGNSLFPGFTERLEKELAQLAPPGV-  354

Query  327  QGDPERLGKFKVRI---EDPPRRRHMVFLGGAVLANLVRNQCSLWVSKQEWEEQGVRALA  383
                      KV+I    +   RR+  ++GG++LA+L   Q  +WVSKQE+EE G   + 
Sbjct  355  ----------KVKIIAPGNTVERRYSAWIGGSILASLGTFQ-QMWVSKQEYEEHGASVVE  403

Query  384  K  384
            +
Sbjct  404  R  404



Lambda      K        H        a         alpha
   0.320    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00002283

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394979 pfam00022, Actin, Actin                                    339     1e-114


>CDD:394979 pfam00022, Actin, Actin.  
Length=407

 Score = 339 bits (871),  Expect = 1e-114, Method: Composition-based stats.
 Identities = 139/397 (35%), Positives = 204/397 (51%), Gaps = 60/397 (15%)

Query  42   FPSIVGRPILRTEEQAGDIVVKDIMCGDEAAAARSMLQISYPMENGIVKKWDDMQHLWNY  101
             PS VG+P                  GDEA   R  +++  P+E+GIV  WD M+ +W +
Sbjct  27   IPSCVGKP-----RGTKVEAANKYYVGDEALTYRPGMEVRSPVEDGIVVDWDAMEEIWEH  81

Query  102  TFYEKMKIDPTGRKILLTEPPMNPLKNREKMCEVMLEQYNFGGVYVAIQAVLALYAQGLS  161
               E++++DP    +LLTEPP NP  NREK  E+M E++    +Y+A   VL+ +A G +
Sbjct  82   VLKEELQVDPEEHPLLLTEPPWNPPANREKAAEIMFEKFGVPALYLAKNPVLSAFASGRT  141

Query  162  SGVVVDSGDGVTHIIPVYESTVLKHHIRRLDVAGRDVTRNLIALLLRR------------  209
            +G+VVDSG GVT ++PV++  VL+  IRR D+ G  +T  L  LL  R            
Sbjct  142  TGLVVDSGAGVTSVVPVHDGYVLQKAIRRSDLGGDFLTDYLRELLRSRNIEITPRYLIKS  201

Query  210  ------------------GYALNRTADFETVRQIKEKLCYVSYDLELDKKLSEDTTVLVE  251
                               Y+     +   + +IKE +CYVS D   D+  S  +++   
Sbjct  202  KKPGDPAPAVTKRELPDTTYSYKTYQERRVLEEIKESVCYVSDDPFGDETTS--SSIPTR  259

Query  252  SYTLPDGRVIRVGSERFEAPECLFQPHLVDVDQP--------GMAELLFNTIQGADVDVR  303
             Y LPDG  I +G+ERF  PE LF P L+  +          G+ EL+ + I   DVD+R
Sbjct  260  VYELPDGSTIILGAERFRVPEILFNPSLIGSESELPPPQTAVGIPELIVDAINACDVDLR  319

Query  304  SSLYKAIVLSGGSSMYPGLPSRLEKELKQLWLTRVLQGDPERLGKFKVRI---EDPPRRR  360
             SL   IV++GG+S++PG   RLEKEL QL    V           KV+I    +   RR
Sbjct  320  PSLLANIVVTGGNSLFPGFTERLEKELAQLAPPGV-----------KVKIIAPGNTVERR  368

Query  361  HMVFLGGAVLANLIADKEDMWVSKQEWEEQGVRALAK  397
            +  ++GG++LA+L    + MWVSKQE+EE G   + +
Sbjct  369  YSAWIGGSILASL-GTFQQMWVSKQEYEEHGASVVER  404



Lambda      K        H        a         alpha
   0.320    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00002284

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00007652

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.527    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00007651

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.527    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00002285

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00002287

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426101 pfam01177, Asp_Glu_race, Asp/Glu/Hydantoin racemase. T...  115     6e-32


>CDD:426101 pfam01177, Asp_Glu_race, Asp/Glu/Hydantoin racemase.  This family 
contains aspartate racemase, maleate isomerases EC:5.2.1.1, 
glutamate racemase, hydantoin racemase and arylmalonate 
decarboxylase EC:4.1.1.76.
Length=210

 Score = 115 bits (289),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 93/242 (38%), Gaps = 35/242 (14%)

Query  12   VLIINPNTSTHMTNALKPILESLDYADIYFNYFTAPSMP-SINSGEDSITSALHCRPFVE  70
            +  INPN++  MT  +     ++    +     T+P  P  I S ED   +A      + 
Sbjct  1    IGGINPNSTASMTRKIVEAARAVLPPHVPVILVTSPDGPDRIESPEDGALAAPALLEALR  60

Query  71   PLV-PKYDAFLVACYSAHPLVGMLKEAITEKDSTIPEYRKKYVTGIFEASVLTSLSLVSS  129
             L     DA ++AC++ HP +  L+E      + IP      V GI EA+ L +L+L   
Sbjct  61   RLEAAGADAIVIACFTDHPGLDALREL-----TDIP------VLGIAEAAALAALALGGR  109

Query  130  FHLMGDANLHKAQSRDTFGIMIVNSGGGGGSTARFAGVE-TTGLTASELHTAPAEEVSRR  188
            F ++         +  T   +   +    G   R  GV    GL    +     EE    
Sbjct  110  FGVLT--------TLGTSSPVYERALRAYGLEVRCPGVRAQEGLPVLIVKGGDTEEARAL  161

Query  189  ISDATERLIKSTSHPVSAICMGCAGMAGMEEAVRDGCIRAYGERQGRRVRIVDGVVAGAG  248
            + +A + L++       AI +GC G+ G+ E +               V ++D V A   
Sbjct  162  LLEAAKALVED---GADAIILGCTGLPGLAEELEAEL----------GVPVIDPVDAAVR  208

Query  249  ML  250
              
Sbjct  209  AA  210



Lambda      K        H        a         alpha
   0.319    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00007653

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426101 pfam01177, Asp_Glu_race, Asp/Glu/Hydantoin racemase. T...  125     1e-35


>CDD:426101 pfam01177, Asp_Glu_race, Asp/Glu/Hydantoin racemase.  This family 
contains aspartate racemase, maleate isomerases EC:5.2.1.1, 
glutamate racemase, hydantoin racemase and arylmalonate 
decarboxylase EC:4.1.1.76.
Length=210

 Score = 125 bits (316),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 60/266 (23%), Positives = 95/266 (36%), Gaps = 59/266 (22%)

Query  12   VLIINPNTSTHMTNALKPILESLDYADIYFNYFTAPSMP-SINSGEDSITSALHCRPFVE  70
            +  INPN++  MT  +     ++    +     T+P  P  I S ED   +A      + 
Sbjct  1    IGGINPNSTASMTRKIVEAARAVLPPHVPVILVTSPDGPDRIESPEDGALAAPALLEALR  60

Query  71   PLV-PKYDAFLVACYSAHPLVGMLKEAITEYERTSSRKDSTIPEYRKKYVTGIFEASVLT  129
             L     DA ++AC++ HP +  L+E             + IP      V GI EA+ L 
Sbjct  61   RLEAAGADAIVIACFTDHPGLDALREL------------TDIP------VLGIAEAAALA  102

Query  130  SLSLVSSFHLMGDANLHKAQSRDTFGIVTTGSIWRDELTRAVAEMIVNSGGGGGSTARFA  189
            +L+L                    FG++TT         RA+           G   R  
Sbjct  103  ALALG-----------------GRFGVLTTLGTSSPVYERALRAY--------GLEVRCP  137

Query  190  GVE-TTGLTASELHTAPAEEVSRRISDATERLIKSTSHPVSAICMGCAGMAGMEEAVRDG  248
            GV    GL    +     EE    + +A + L++       AI +GC G+ G+ E +   
Sbjct  138  GVRAQEGLPVLIVKGGDTEEARALLLEAAKALVED---GADAIILGCTGLPGLAEELEAE  194

Query  249  CIRAYGERQGRRVRIVDGVVAGAGML  274
                        V ++D V A     
Sbjct  195  L----------GVPVIDPVDAAVRAA  210



Lambda      K        H        a         alpha
   0.318    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00007654

Length=335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397858 pfam03953, Tubulin_C, Tubulin C-terminal domain. This ...  197     4e-64
CDD:459669 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain...  122     2e-34


>CDD:397858 pfam03953, Tubulin_C, Tubulin C-terminal domain.  This family 
includes the tubulin alpha, beta and gamma chains. Members 
of this family are involved in polymer formation. Tubulins are 
GTPases. FtsZ can polymerize into tubes, sheets, and rings 
in vitro and is ubiquitous in eubacteria and archaea. Tubulin 
is the major component of microtubules. (The FtsZ GTPases 
have been split into their won family).
Length=125

 Score = 197 bits (503),  Expect = 4e-64, Method: Composition-based stats.
 Identities = 62/128 (48%), Positives = 87/128 (68%), Gaps = 4/128 (3%)

Query  143  PRSHFLITSYTPFTGDNVDQAKTVRKTTVLDVMRRLLQPKNRMVSINPSKSSCYMSILNI  202
            PR HFL+TSY P T  N     +  KT+VLDV RRL  PKN+MVS +P ++  YM+   +
Sbjct  1    PRLHFLLTSYAPLTSAN---KASHEKTSVLDVTRRLFDPKNQMVSCDP-RNGKYMACALL  56

Query  203  IQGEADPTDVHKSLLRIRERRLASFIPWGPASIQVALTKKSPYIQNTHRVSGLMLANHTS  262
             +G+  P DVH+++ RI+E+R A F+ W P  I+VA+  +SPY+    +VSGLMLAN TS
Sbjct  57   YRGDVSPKDVHRAIQRIKEKRSAQFVEWCPTGIKVAICSQSPYVVPGSKVSGLMLANTTS  116

Query  263  VATLFKRI  270
            +A LF+R+
Sbjct  117  IAELFQRL  124


>CDD:459669 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain.  This 
family includes the tubulin alpha, beta and gamma chains, as 
well as the bacterial FtsZ family of proteins. Members of 
this family are involved in polymer formation. FtsZ is the polymer-forming 
protein of bacterial cell division. It is part 
of a ring in the middle of the dividing cell that is required 
for constriction of cell membrane and cell envelope to yield 
two daughter cells. FtsZ and tubulin are GTPases. FtsZ 
can polymerize into tubes, sheets, and rings in vitro and is 
ubiquitous in eubacteria and archaea. Tubulin is the major 
component of microtubules.
Length=190

 Score = 122 bits (309),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 37/93 (40%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query  1    MIDREADGSDSLEGFMFLHSIAGGTGSGLGSFILERMNDRFPKKLIQTYSVFPDTQSADV  60
             I +E +G D L+GF    S+ GGTGSG    I E + + +P  L      FP   S + 
Sbjct  98   EIRKEVEGCDMLQGFFITASLGGGTGSGAAPVIAEILKELYPGALTVAVVTFPFGFS-EG  156

Query  61   VVNPYNSLLAMRRLTQNADSVVVLDNGALSRIV  93
            VV PYN++L ++ L +++DSV+V+DN AL  I 
Sbjct  157  VVRPYNAILGLKELIEHSDSVIVIDNDALYDIC  189



Lambda      K        H        a         alpha
   0.318    0.133    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0691    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00002288

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459669 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain...  229     3e-74
CDD:397858 pfam03953, Tubulin_C, Tubulin C-terminal domain. This ...  199     1e-63


>CDD:459669 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain.  This 
family includes the tubulin alpha, beta and gamma chains, as 
well as the bacterial FtsZ family of proteins. Members of 
this family are involved in polymer formation. FtsZ is the polymer-forming 
protein of bacterial cell division. It is part 
of a ring in the middle of the dividing cell that is required 
for constriction of cell membrane and cell envelope to yield 
two daughter cells. FtsZ and tubulin are GTPases. FtsZ 
can polymerize into tubes, sheets, and rings in vitro and is 
ubiquitous in eubacteria and archaea. Tubulin is the major 
component of microtubules.
Length=190

 Score = 229 bits (587),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 114/211 (54%), Gaps = 23/211 (11%)

Query  4    EIITIQAGQCGNNVGSQFWQQLCLEHGISQDGNLEEFATEGGDRKDVFFYQSDDTRYIPR  63
            EII I  G  GNN+G+  W+ LCLEHGI              D  +VFF +S    +IPR
Sbjct  1    EIIVIGVGGAGNNIGNALWELLCLEHGI--------------DSLNVFFSESGSVEFIPR  46

Query  64   AILLDLEPRVLNSIQSGPYKNIYNPENFFIGQQGIGAGNNWGAGYA-AGEVVQEEVFDMI  122
            ++ +D +P+ LN I++G     +NP    +G++G   G N   GY   G    EE  + I
Sbjct  47   SLAIDTDPQALNEIKAG-----FNPNKILLGKEG--TGGNGAGGYPEIGREAAEESLEEI  99

Query  123  DREADGSDSLEGFMFLHSIAGGTGSGLGSFILERMNDRFPKKLIQTYSVFPDTQSADVVV  182
             +E +G D L+GF    S+ GGTGSG    I E + + +P  L      FP   S + VV
Sbjct  100  RKEVEGCDMLQGFFITASLGGGTGSGAAPVIAEILKELYPGALTVAVVTFPFGFS-EGVV  158

Query  183  NPYNSLLAMRRLTQNADSVVVLDNGALSRIV  213
             PYN++L ++ L +++DSV+V+DN AL  I 
Sbjct  159  RPYNAILGLKELIEHSDSVIVIDNDALYDIC  189


>CDD:397858 pfam03953, Tubulin_C, Tubulin C-terminal domain.  This family 
includes the tubulin alpha, beta and gamma chains. Members 
of this family are involved in polymer formation. Tubulins are 
GTPases. FtsZ can polymerize into tubes, sheets, and rings 
in vitro and is ubiquitous in eubacteria and archaea. Tubulin 
is the major component of microtubules. (The FtsZ GTPases 
have been split into their won family).
Length=125

 Score = 199 bits (509),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 62/128 (48%), Positives = 87/128 (68%), Gaps = 4/128 (3%)

Query  263  PRSHFLITSYTPFTGDNVDQAKTVRKTTVLDVMRRLLQPKNRMVSINPSKSSCYMSILNI  322
            PR HFL+TSY P T  N     +  KT+VLDV RRL  PKN+MVS +P ++  YM+   +
Sbjct  1    PRLHFLLTSYAPLTSAN---KASHEKTSVLDVTRRLFDPKNQMVSCDP-RNGKYMACALL  56

Query  323  IQGEADPTDVHKSLLRIRERRLASFIPWGPASIQVALTKKSPYIQNTHRVSGLMLANHTS  382
             +G+  P DVH+++ RI+E+R A F+ W P  I+VA+  +SPY+    +VSGLMLAN TS
Sbjct  57   YRGDVSPKDVHRAIQRIKEKRSAQFVEWCPTGIKVAICSQSPYVVPGSKVSGLMLANTTS  116

Query  383  VATLFKRI  390
            +A LF+R+
Sbjct  117  IAELFQRL  124



Lambda      K        H        a         alpha
   0.318    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00002289

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459669 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain...  221     9e-74


>CDD:459669 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain.  This 
family includes the tubulin alpha, beta and gamma chains, as 
well as the bacterial FtsZ family of proteins. Members of 
this family are involved in polymer formation. FtsZ is the polymer-forming 
protein of bacterial cell division. It is part 
of a ring in the middle of the dividing cell that is required 
for constriction of cell membrane and cell envelope to yield 
two daughter cells. FtsZ and tubulin are GTPases. FtsZ 
can polymerize into tubes, sheets, and rings in vitro and is 
ubiquitous in eubacteria and archaea. Tubulin is the major 
component of microtubules.
Length=190

 Score = 221 bits (566),  Expect = 9e-74, Method: Composition-based stats.
 Identities = 79/211 (37%), Positives = 114/211 (54%), Gaps = 23/211 (11%)

Query  4    EIITIQAGQCGNNVGSQFWQQLCLEHGISQDGNLEEFATEGGDRKDVFFYQSDDTRYIPR  63
            EII I  G  GNN+G+  W+ LCLEHGI              D  +VFF +S    +IPR
Sbjct  1    EIIVIGVGGAGNNIGNALWELLCLEHGI--------------DSLNVFFSESGSVEFIPR  46

Query  64   AILLDLEPRVLNSIQSGPYKNIYNPENFFIGQQGIGAGNNWGAGYA-AGEVVQEEVFDMI  122
            ++ +D +P+ LN I++G     +NP    +G++G   G N   GY   G    EE  + I
Sbjct  47   SLAIDTDPQALNEIKAG-----FNPNKILLGKEG--TGGNGAGGYPEIGREAAEESLEEI  99

Query  123  DREADGSDSLEGFMFLHSIAGGTGSGLGSFILERMNDRFPKKLIQTYSVFPDTQSADVVV  182
             +E +G D L+GF    S+ GGTGSG    I E + + +P  L      FP   S + VV
Sbjct  100  RKEVEGCDMLQGFFITASLGGGTGSGAAPVIAEILKELYPGALTVAVVTFPFGFS-EGVV  158

Query  183  NPYNSLLAMRRLTQNADSVVVLDNGALSRIV  213
             PYN++L ++ L +++DSV+V+DN AL  I 
Sbjct  159  RPYNAILGLKELIEHSDSVIVIDNDALYDIC  189



Lambda      K        H        a         alpha
   0.318    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00007656

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (P...  456     3e-162


>CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (PTPA) protein. 
 Phosphotyrosyl phosphatase activator (PTPA) proteins 
stimulate the phosphotyrosyl phosphatase (PTPase) activity 
of the dimeric form of protein phosphatase 2A (PP2A). PTPase 
activity in PP2A (in vitro) is relatively low when compared 
to the better recognized phosphoserine/ threonine protein phosphorylase 
activity. The specific biological role of PTPA 
is unknown, Basal expression of PTPA depends on the activity 
of a ubiquitous transcription factor, Yin Yang 1 (YY1). The 
tumor suppressor protein p53 can inhibit PTPA expression through 
an unknown mechanism that negatively controls YY1.
Length=293

 Score = 456 bits (1175),  Expect = 3e-162, Method: Composition-based stats.
 Identities = 141/297 (47%), Positives = 207/297 (70%), Gaps = 5/297 (2%)

Query  62   PVRRILSRKDHETFLASSTYTLVVSFTFSLSDSVRGRAVTDNKDQPASPNISRILSVIDT  121
            PV+RILS +D E F  S  Y  +++F   L+++V+G+ ++D    P S N+ ++L ++DT
Sbjct  1    PVKRILSPEDLEKFKRSQAYADILAFILQLNEAVQGKKLSD--SFPVSENVQKLLDLLDT  58

Query  122  IRQLVDKHPSIDQGGSRFGNPAFRDLFDDVAAQNATWHREII-GLQNADAIEEVSSYLVH  180
            +  L+D+ P +DQ  SRFGN AFRD  D +  +  +   E++       AI E+S YL+ 
Sbjct  59   LESLIDETPPVDQP-SRFGNKAFRDWHDKLEERAPSLLDELLPPELLGAAINELSPYLLE  117

Query  181  SLGSRDRLDYGSGHELNFMMWLLCLRQMQMISTADFPMIVFRVYLEYMRLMRQVQMTYYL  240
            S G+R R+DYG+GHEL+F+ +LLCL ++ +++  D   +V RV++ Y+ L+R++Q+TY+L
Sbjct  118  SFGNRTRIDYGTGHELSFLAFLLCLFKLGILTEEDERALVLRVFVRYLDLVRRLQLTYWL  177

Query  241  EPAGSHGVWGLDDYHFLPFLFGAAQLVDHPYITPLAIHNTAVLDEEGDKYIYLDQVRWVD  300
            EPAGSHGVWGLDDY FLPFLFG+AQL+ HPY+ P +IH+  +++E    Y+YL  + +++
Sbjct  178  EPAGSHGVWGLDDYQFLPFLFGSAQLIGHPYLKPKSIHDPEIVEEYRKDYLYLSCIAFIN  237

Query  301  SVKTVKGLRWHSPMLDDISGAKNWLKIEGGMKKMFIKEVLGKLPIMQHFLFGSLLPA  357
             VKT    R HSPML DISG K+W K+  GM KM+  EVLGK P++QHFLFGSLLP 
Sbjct  238  KVKTG-PFREHSPMLYDISGVKSWSKVNSGMIKMYKAEVLGKFPVVQHFLFGSLLPW  293



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00002290

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459669 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain...  203     3e-64
CDD:397858 pfam03953, Tubulin_C, Tubulin C-terminal domain. This ...  199     9e-64


>CDD:459669 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain.  This 
family includes the tubulin alpha, beta and gamma chains, as 
well as the bacterial FtsZ family of proteins. Members of 
this family are involved in polymer formation. FtsZ is the polymer-forming 
protein of bacterial cell division. It is part 
of a ring in the middle of the dividing cell that is required 
for constriction of cell membrane and cell envelope to yield 
two daughter cells. FtsZ and tubulin are GTPases. FtsZ 
can polymerize into tubes, sheets, and rings in vitro and is 
ubiquitous in eubacteria and archaea. Tubulin is the major 
component of microtubules.
Length=190

 Score = 203 bits (518),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 71/199 (36%), Positives = 106/199 (53%), Gaps = 23/199 (12%)

Query  1    MVGSQFWQQLCLEHGISQDGNLEEFATEGGDRKDVFFYQSDDTRYIPRAILLDLEPRVLN  60
             +G+  W+ LCLEHGI              D  +VFF +S    +IPR++ +D +P+ LN
Sbjct  13   NIGNALWELLCLEHGI--------------DSLNVFFSESGSVEFIPRSLAIDTDPQALN  58

Query  61   SIQSGPYKNIYNPENFFIGQQGIGAGNNWGAGYA-AGEVVQEEVFDMIDREADGSDSLEG  119
             I++G     +NP    +G++G   G N   GY   G    EE  + I +E +G D L+G
Sbjct  59   EIKAG-----FNPNKILLGKEG--TGGNGAGGYPEIGREAAEESLEEIRKEVEGCDMLQG  111

Query  120  FMFLHSIAGGTGSGLGSFILERMNDRFPKKLIQTYSVFPDTQSADVVVNPYNSLLAMRRL  179
            F    S+ GGTGSG    I E + + +P  L      FP   S + VV PYN++L ++ L
Sbjct  112  FFITASLGGGTGSGAAPVIAEILKELYPGALTVAVVTFPFGFS-EGVVRPYNAILGLKEL  170

Query  180  TQNADSVVVLDNGALSRIV  198
             +++DSV+V+DN AL  I 
Sbjct  171  IEHSDSVIVIDNDALYDIC  189


>CDD:397858 pfam03953, Tubulin_C, Tubulin C-terminal domain.  This family 
includes the tubulin alpha, beta and gamma chains. Members 
of this family are involved in polymer formation. Tubulins are 
GTPases. FtsZ can polymerize into tubes, sheets, and rings 
in vitro and is ubiquitous in eubacteria and archaea. Tubulin 
is the major component of microtubules. (The FtsZ GTPases 
have been split into their won family).
Length=125

 Score = 199 bits (509),  Expect = 9e-64, Method: Composition-based stats.
 Identities = 62/128 (48%), Positives = 87/128 (68%), Gaps = 4/128 (3%)

Query  248  PRSHFLITSYTPFTGDNVDQAKTVRKTTVLDVMRRLLQPKNRMVSINPSKSSCYMSILNI  307
            PR HFL+TSY P T  N     +  KT+VLDV RRL  PKN+MVS +P ++  YM+   +
Sbjct  1    PRLHFLLTSYAPLTSAN---KASHEKTSVLDVTRRLFDPKNQMVSCDP-RNGKYMACALL  56

Query  308  IQGEADPTDVHKSLLRIRERRLASFIPWGPASIQVALTKKSPYIQNTHRVSGLMLANHTS  367
             +G+  P DVH+++ RI+E+R A F+ W P  I+VA+  +SPY+    +VSGLMLAN TS
Sbjct  57   YRGDVSPKDVHRAIQRIKEKRSAQFVEWCPTGIKVAICSQSPYVVPGSKVSGLMLANTTS  116

Query  368  VATLFKRI  375
            +A LF+R+
Sbjct  117  IAELFQRL  124



Lambda      K        H        a         alpha
   0.318    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00002291

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459669 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain...  225     9e-73
CDD:397858 pfam03953, Tubulin_C, Tubulin C-terminal domain. This ...  199     1e-63


>CDD:459669 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain.  This 
family includes the tubulin alpha, beta and gamma chains, as 
well as the bacterial FtsZ family of proteins. Members of 
this family are involved in polymer formation. FtsZ is the polymer-forming 
protein of bacterial cell division. It is part 
of a ring in the middle of the dividing cell that is required 
for constriction of cell membrane and cell envelope to yield 
two daughter cells. FtsZ and tubulin are GTPases. FtsZ 
can polymerize into tubes, sheets, and rings in vitro and is 
ubiquitous in eubacteria and archaea. Tubulin is the major 
component of microtubules.
Length=190

 Score = 225 bits (577),  Expect = 9e-73, Method: Composition-based stats.
 Identities = 78/212 (37%), Positives = 113/212 (53%), Gaps = 24/212 (11%)

Query  4    EIITIQAGQCGNNVGSQFWQQLCLEHGISQDGNLEEFATEGGDRKDVFFYQQSDDTRYIP  63
            EII I  G  GNN+G+  W+ LCLEHGI              D  +VFF +      +IP
Sbjct  1    EIIVIGVGGAGNNIGNALWELLCLEHGI--------------DSLNVFFSESGSV-EFIP  45

Query  64   RAILLDLEPRVLNSIQSGPYKNIYNPENFFIGQQGIGAGNNWGAGYA-AGEVVQEEVFDM  122
            R++ +D +P+ LN I++G     +NP    +G++G   G N   GY   G    EE  + 
Sbjct  46   RSLAIDTDPQALNEIKAG-----FNPNKILLGKEG--TGGNGAGGYPEIGREAAEESLEE  98

Query  123  IDREADGSDSLEGFMFLHSIAGGTGSGLGSFILERMNDRFPKKLIQTYSVFPDTQSADVV  182
            I +E +G D L+GF    S+ GGTGSG    I E + + +P  L      FP   S + V
Sbjct  99   IRKEVEGCDMLQGFFITASLGGGTGSGAAPVIAEILKELYPGALTVAVVTFPFGFS-EGV  157

Query  183  VNPYNSLLAMRRLTQNADSVVVLDNGALSRIV  214
            V PYN++L ++ L +++DSV+V+DN AL  I 
Sbjct  158  VRPYNAILGLKELIEHSDSVIVIDNDALYDIC  189


>CDD:397858 pfam03953, Tubulin_C, Tubulin C-terminal domain.  This family 
includes the tubulin alpha, beta and gamma chains. Members 
of this family are involved in polymer formation. Tubulins are 
GTPases. FtsZ can polymerize into tubes, sheets, and rings 
in vitro and is ubiquitous in eubacteria and archaea. Tubulin 
is the major component of microtubules. (The FtsZ GTPases 
have been split into their won family).
Length=125

 Score = 199 bits (509),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 62/128 (48%), Positives = 87/128 (68%), Gaps = 4/128 (3%)

Query  264  PRSHFLITSYTPFTGDNVDQAKTVRKTTVLDVMRRLLQPKNRMVSINPSKSSCYMSILNI  323
            PR HFL+TSY P T  N     +  KT+VLDV RRL  PKN+MVS +P ++  YM+   +
Sbjct  1    PRLHFLLTSYAPLTSAN---KASHEKTSVLDVTRRLFDPKNQMVSCDP-RNGKYMACALL  56

Query  324  IQGEADPTDVHKSLLRIRERRLASFIPWGPASIQVALTKKSPYIQNTHRVSGLMLANHTS  383
             +G+  P DVH+++ RI+E+R A F+ W P  I+VA+  +SPY+    +VSGLMLAN TS
Sbjct  57   YRGDVSPKDVHRAIQRIKEKRSAQFVEWCPTGIKVAICSQSPYVVPGSKVSGLMLANTTS  116

Query  384  VATLFKRI  391
            +A LF+R+
Sbjct  117  IAELFQRL  124



Lambda      K        H        a         alpha
   0.318    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00002292

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397858 pfam03953, Tubulin_C, Tubulin C-terminal domain. This ...  197     9e-66


>CDD:397858 pfam03953, Tubulin_C, Tubulin C-terminal domain.  This family 
includes the tubulin alpha, beta and gamma chains. Members 
of this family are involved in polymer formation. Tubulins are 
GTPases. FtsZ can polymerize into tubes, sheets, and rings 
in vitro and is ubiquitous in eubacteria and archaea. Tubulin 
is the major component of microtubules. (The FtsZ GTPases 
have been split into their won family).
Length=125

 Score = 197 bits (503),  Expect = 9e-66, Method: Composition-based stats.
 Identities = 62/128 (48%), Positives = 87/128 (68%), Gaps = 4/128 (3%)

Query  29   PRSHFLITSYTPFTGDNVDQAKTVRKTTVLDVMRRLLQPKNRMVSINPSKSSCYMSILNI  88
            PR HFL+TSY P T  N     +  KT+VLDV RRL  PKN+MVS +P ++  YM+   +
Sbjct  1    PRLHFLLTSYAPLTSAN---KASHEKTSVLDVTRRLFDPKNQMVSCDP-RNGKYMACALL  56

Query  89   IQGEADPTDVHKSLLRIRERRLASFIPWGPASIQVALTKKSPYIQNTHRVSGLMLANHTS  148
             +G+  P DVH+++ RI+E+R A F+ W P  I+VA+  +SPY+    +VSGLMLAN TS
Sbjct  57   YRGDVSPKDVHRAIQRIKEKRSAQFVEWCPTGIKVAICSQSPYVVPGSKVSGLMLANTTS  116

Query  149  VATLFKRI  156
            +A LF+R+
Sbjct  117  IAELFQRL  124



Lambda      K        H        a         alpha
   0.318    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00007657

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (P...  456     3e-162


>CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (PTPA) protein. 
 Phosphotyrosyl phosphatase activator (PTPA) proteins 
stimulate the phosphotyrosyl phosphatase (PTPase) activity 
of the dimeric form of protein phosphatase 2A (PP2A). PTPase 
activity in PP2A (in vitro) is relatively low when compared 
to the better recognized phosphoserine/ threonine protein phosphorylase 
activity. The specific biological role of PTPA 
is unknown, Basal expression of PTPA depends on the activity 
of a ubiquitous transcription factor, Yin Yang 1 (YY1). The 
tumor suppressor protein p53 can inhibit PTPA expression through 
an unknown mechanism that negatively controls YY1.
Length=293

 Score = 456 bits (1175),  Expect = 3e-162, Method: Composition-based stats.
 Identities = 141/297 (47%), Positives = 207/297 (70%), Gaps = 5/297 (2%)

Query  62   PVRRILSRKDHETFLASSTYTLVVSFTFSLSDSVRGRAVTDNKDQPASPNISRILSVIDT  121
            PV+RILS +D E F  S  Y  +++F   L+++V+G+ ++D    P S N+ ++L ++DT
Sbjct  1    PVKRILSPEDLEKFKRSQAYADILAFILQLNEAVQGKKLSD--SFPVSENVQKLLDLLDT  58

Query  122  IRQLVDKHPSIDQGGSRFGNPAFRDLFDDVAAQNATWHREII-GLQNADAIEEVSSYLVH  180
            +  L+D+ P +DQ  SRFGN AFRD  D +  +  +   E++       AI E+S YL+ 
Sbjct  59   LESLIDETPPVDQP-SRFGNKAFRDWHDKLEERAPSLLDELLPPELLGAAINELSPYLLE  117

Query  181  SLGSRDRLDYGSGHELNFMMWLLCLRQMQMISTADFPMIVFRVYLEYMRLMRQVQMTYYL  240
            S G+R R+DYG+GHEL+F+ +LLCL ++ +++  D   +V RV++ Y+ L+R++Q+TY+L
Sbjct  118  SFGNRTRIDYGTGHELSFLAFLLCLFKLGILTEEDERALVLRVFVRYLDLVRRLQLTYWL  177

Query  241  EPAGSHGVWGLDDYHFLPFLFGAAQLVDHPYITPLAIHNTAVLDEEGDKYIYLDQVRWVD  300
            EPAGSHGVWGLDDY FLPFLFG+AQL+ HPY+ P +IH+  +++E    Y+YL  + +++
Sbjct  178  EPAGSHGVWGLDDYQFLPFLFGSAQLIGHPYLKPKSIHDPEIVEEYRKDYLYLSCIAFIN  237

Query  301  SVKTVKGLRWHSPMLDDISGAKNWLKIEGGMKKMFIKEVLGKLPIMQHFLFGSLLPA  357
             VKT    R HSPML DISG K+W K+  GM KM+  EVLGK P++QHFLFGSLLP 
Sbjct  238  KVKTG-PFREHSPMLYDISGVKSWSKVNSGMIKMYKAEVLGKFPVVQHFLFGSLLPW  293



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00007658

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00002293

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (P...  456     3e-162


>CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (PTPA) protein. 
 Phosphotyrosyl phosphatase activator (PTPA) proteins 
stimulate the phosphotyrosyl phosphatase (PTPase) activity 
of the dimeric form of protein phosphatase 2A (PP2A). PTPase 
activity in PP2A (in vitro) is relatively low when compared 
to the better recognized phosphoserine/ threonine protein phosphorylase 
activity. The specific biological role of PTPA 
is unknown, Basal expression of PTPA depends on the activity 
of a ubiquitous transcription factor, Yin Yang 1 (YY1). The 
tumor suppressor protein p53 can inhibit PTPA expression through 
an unknown mechanism that negatively controls YY1.
Length=293

 Score = 456 bits (1175),  Expect = 3e-162, Method: Composition-based stats.
 Identities = 141/297 (47%), Positives = 207/297 (70%), Gaps = 5/297 (2%)

Query  62   PVRRILSRKDHETFLASSTYTLVVSFTFSLSDSVRGRAVTDNKDQPASPNISRILSVIDT  121
            PV+RILS +D E F  S  Y  +++F   L+++V+G+ ++D    P S N+ ++L ++DT
Sbjct  1    PVKRILSPEDLEKFKRSQAYADILAFILQLNEAVQGKKLSD--SFPVSENVQKLLDLLDT  58

Query  122  IRQLVDKHPSIDQGGSRFGNPAFRDLFDDVAAQNATWHREII-GLQNADAIEEVSSYLVH  180
            +  L+D+ P +DQ  SRFGN AFRD  D +  +  +   E++       AI E+S YL+ 
Sbjct  59   LESLIDETPPVDQP-SRFGNKAFRDWHDKLEERAPSLLDELLPPELLGAAINELSPYLLE  117

Query  181  SLGSRDRLDYGSGHELNFMMWLLCLRQMQMISTADFPMIVFRVYLEYMRLMRQVQMTYYL  240
            S G+R R+DYG+GHEL+F+ +LLCL ++ +++  D   +V RV++ Y+ L+R++Q+TY+L
Sbjct  118  SFGNRTRIDYGTGHELSFLAFLLCLFKLGILTEEDERALVLRVFVRYLDLVRRLQLTYWL  177

Query  241  EPAGSHGVWGLDDYHFLPFLFGAAQLVDHPYITPLAIHNTAVLDEEGDKYIYLDQVRWVD  300
            EPAGSHGVWGLDDY FLPFLFG+AQL+ HPY+ P +IH+  +++E    Y+YL  + +++
Sbjct  178  EPAGSHGVWGLDDYQFLPFLFGSAQLIGHPYLKPKSIHDPEIVEEYRKDYLYLSCIAFIN  237

Query  301  SVKTVKGLRWHSPMLDDISGAKNWLKIEGGMKKMFIKEVLGKLPIMQHFLFGSLLPA  357
             VKT    R HSPML DISG K+W K+  GM KM+  EVLGK P++QHFLFGSLLP 
Sbjct  238  KVKTG-PFREHSPMLYDISGVKSWSKVNSGMIKMYKAEVLGKFPVVQHFLFGSLLPW  293



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00007659

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (P...  456     3e-162


>CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (PTPA) protein. 
 Phosphotyrosyl phosphatase activator (PTPA) proteins 
stimulate the phosphotyrosyl phosphatase (PTPase) activity 
of the dimeric form of protein phosphatase 2A (PP2A). PTPase 
activity in PP2A (in vitro) is relatively low when compared 
to the better recognized phosphoserine/ threonine protein phosphorylase 
activity. The specific biological role of PTPA 
is unknown, Basal expression of PTPA depends on the activity 
of a ubiquitous transcription factor, Yin Yang 1 (YY1). The 
tumor suppressor protein p53 can inhibit PTPA expression through 
an unknown mechanism that negatively controls YY1.
Length=293

 Score = 456 bits (1175),  Expect = 3e-162, Method: Composition-based stats.
 Identities = 141/297 (47%), Positives = 207/297 (70%), Gaps = 5/297 (2%)

Query  62   PVRRILSRKDHETFLASSTYTLVVSFTFSLSDSVRGRAVTDNKDQPASPNISRILSVIDT  121
            PV+RILS +D E F  S  Y  +++F   L+++V+G+ ++D    P S N+ ++L ++DT
Sbjct  1    PVKRILSPEDLEKFKRSQAYADILAFILQLNEAVQGKKLSD--SFPVSENVQKLLDLLDT  58

Query  122  IRQLVDKHPSIDQGGSRFGNPAFRDLFDDVAAQNATWHREII-GLQNADAIEEVSSYLVH  180
            +  L+D+ P +DQ  SRFGN AFRD  D +  +  +   E++       AI E+S YL+ 
Sbjct  59   LESLIDETPPVDQP-SRFGNKAFRDWHDKLEERAPSLLDELLPPELLGAAINELSPYLLE  117

Query  181  SLGSRDRLDYGSGHELNFMMWLLCLRQMQMISTADFPMIVFRVYLEYMRLMRQVQMTYYL  240
            S G+R R+DYG+GHEL+F+ +LLCL ++ +++  D   +V RV++ Y+ L+R++Q+TY+L
Sbjct  118  SFGNRTRIDYGTGHELSFLAFLLCLFKLGILTEEDERALVLRVFVRYLDLVRRLQLTYWL  177

Query  241  EPAGSHGVWGLDDYHFLPFLFGAAQLVDHPYITPLAIHNTAVLDEEGDKYIYLDQVRWVD  300
            EPAGSHGVWGLDDY FLPFLFG+AQL+ HPY+ P +IH+  +++E    Y+YL  + +++
Sbjct  178  EPAGSHGVWGLDDYQFLPFLFGSAQLIGHPYLKPKSIHDPEIVEEYRKDYLYLSCIAFIN  237

Query  301  SVKTVKGLRWHSPMLDDISGAKNWLKIEGGMKKMFIKEVLGKLPIMQHFLFGSLLPA  357
             VKT    R HSPML DISG K+W K+  GM KM+  EVLGK P++QHFLFGSLLP 
Sbjct  238  KVKTG-PFREHSPMLYDISGVKSWSKVNSGMIKMYKAEVLGKFPVVQHFLFGSLLPW  293



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00002295

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (P...  456     3e-162


>CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (PTPA) protein. 
 Phosphotyrosyl phosphatase activator (PTPA) proteins 
stimulate the phosphotyrosyl phosphatase (PTPase) activity 
of the dimeric form of protein phosphatase 2A (PP2A). PTPase 
activity in PP2A (in vitro) is relatively low when compared 
to the better recognized phosphoserine/ threonine protein phosphorylase 
activity. The specific biological role of PTPA 
is unknown, Basal expression of PTPA depends on the activity 
of a ubiquitous transcription factor, Yin Yang 1 (YY1). The 
tumor suppressor protein p53 can inhibit PTPA expression through 
an unknown mechanism that negatively controls YY1.
Length=293

 Score = 456 bits (1175),  Expect = 3e-162, Method: Composition-based stats.
 Identities = 141/297 (47%), Positives = 207/297 (70%), Gaps = 5/297 (2%)

Query  62   PVRRILSRKDHETFLASSTYTLVVSFTFSLSDSVRGRAVTDNKDQPASPNISRILSVIDT  121
            PV+RILS +D E F  S  Y  +++F   L+++V+G+ ++D    P S N+ ++L ++DT
Sbjct  1    PVKRILSPEDLEKFKRSQAYADILAFILQLNEAVQGKKLSD--SFPVSENVQKLLDLLDT  58

Query  122  IRQLVDKHPSIDQGGSRFGNPAFRDLFDDVAAQNATWHREII-GLQNADAIEEVSSYLVH  180
            +  L+D+ P +DQ  SRFGN AFRD  D +  +  +   E++       AI E+S YL+ 
Sbjct  59   LESLIDETPPVDQP-SRFGNKAFRDWHDKLEERAPSLLDELLPPELLGAAINELSPYLLE  117

Query  181  SLGSRDRLDYGSGHELNFMMWLLCLRQMQMISTADFPMIVFRVYLEYMRLMRQVQMTYYL  240
            S G+R R+DYG+GHEL+F+ +LLCL ++ +++  D   +V RV++ Y+ L+R++Q+TY+L
Sbjct  118  SFGNRTRIDYGTGHELSFLAFLLCLFKLGILTEEDERALVLRVFVRYLDLVRRLQLTYWL  177

Query  241  EPAGSHGVWGLDDYHFLPFLFGAAQLVDHPYITPLAIHNTAVLDEEGDKYIYLDQVRWVD  300
            EPAGSHGVWGLDDY FLPFLFG+AQL+ HPY+ P +IH+  +++E    Y+YL  + +++
Sbjct  178  EPAGSHGVWGLDDYQFLPFLFGSAQLIGHPYLKPKSIHDPEIVEEYRKDYLYLSCIAFIN  237

Query  301  SVKTVKGLRWHSPMLDDISGAKNWLKIEGGMKKMFIKEVLGKLPIMQHFLFGSLLPA  357
             VKT    R HSPML DISG K+W K+  GM KM+  EVLGK P++QHFLFGSLLP 
Sbjct  238  KVKTG-PFREHSPMLYDISGVKSWSKVNSGMIKMYKAEVLGKFPVVQHFLFGSLLPW  293



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00002294

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (P...  456     3e-162


>CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (PTPA) protein. 
 Phosphotyrosyl phosphatase activator (PTPA) proteins 
stimulate the phosphotyrosyl phosphatase (PTPase) activity 
of the dimeric form of protein phosphatase 2A (PP2A). PTPase 
activity in PP2A (in vitro) is relatively low when compared 
to the better recognized phosphoserine/ threonine protein phosphorylase 
activity. The specific biological role of PTPA 
is unknown, Basal expression of PTPA depends on the activity 
of a ubiquitous transcription factor, Yin Yang 1 (YY1). The 
tumor suppressor protein p53 can inhibit PTPA expression through 
an unknown mechanism that negatively controls YY1.
Length=293

 Score = 456 bits (1175),  Expect = 3e-162, Method: Composition-based stats.
 Identities = 141/297 (47%), Positives = 207/297 (70%), Gaps = 5/297 (2%)

Query  62   PVRRILSRKDHETFLASSTYTLVVSFTFSLSDSVRGRAVTDNKDQPASPNISRILSVIDT  121
            PV+RILS +D E F  S  Y  +++F   L+++V+G+ ++D    P S N+ ++L ++DT
Sbjct  1    PVKRILSPEDLEKFKRSQAYADILAFILQLNEAVQGKKLSD--SFPVSENVQKLLDLLDT  58

Query  122  IRQLVDKHPSIDQGGSRFGNPAFRDLFDDVAAQNATWHREII-GLQNADAIEEVSSYLVH  180
            +  L+D+ P +DQ  SRFGN AFRD  D +  +  +   E++       AI E+S YL+ 
Sbjct  59   LESLIDETPPVDQP-SRFGNKAFRDWHDKLEERAPSLLDELLPPELLGAAINELSPYLLE  117

Query  181  SLGSRDRLDYGSGHELNFMMWLLCLRQMQMISTADFPMIVFRVYLEYMRLMRQVQMTYYL  240
            S G+R R+DYG+GHEL+F+ +LLCL ++ +++  D   +V RV++ Y+ L+R++Q+TY+L
Sbjct  118  SFGNRTRIDYGTGHELSFLAFLLCLFKLGILTEEDERALVLRVFVRYLDLVRRLQLTYWL  177

Query  241  EPAGSHGVWGLDDYHFLPFLFGAAQLVDHPYITPLAIHNTAVLDEEGDKYIYLDQVRWVD  300
            EPAGSHGVWGLDDY FLPFLFG+AQL+ HPY+ P +IH+  +++E    Y+YL  + +++
Sbjct  178  EPAGSHGVWGLDDYQFLPFLFGSAQLIGHPYLKPKSIHDPEIVEEYRKDYLYLSCIAFIN  237

Query  301  SVKTVKGLRWHSPMLDDISGAKNWLKIEGGMKKMFIKEVLGKLPIMQHFLFGSLLPA  357
             VKT    R HSPML DISG K+W K+  GM KM+  EVLGK P++QHFLFGSLLP 
Sbjct  238  KVKTG-PFREHSPMLYDISGVKSWSKVNSGMIKMYKAEVLGKFPVVQHFLFGSLLPW  293



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00002296

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.511    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00002297

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00007660

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (P...  456     3e-162


>CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (PTPA) protein. 
 Phosphotyrosyl phosphatase activator (PTPA) proteins 
stimulate the phosphotyrosyl phosphatase (PTPase) activity 
of the dimeric form of protein phosphatase 2A (PP2A). PTPase 
activity in PP2A (in vitro) is relatively low when compared 
to the better recognized phosphoserine/ threonine protein phosphorylase 
activity. The specific biological role of PTPA 
is unknown, Basal expression of PTPA depends on the activity 
of a ubiquitous transcription factor, Yin Yang 1 (YY1). The 
tumor suppressor protein p53 can inhibit PTPA expression through 
an unknown mechanism that negatively controls YY1.
Length=293

 Score = 456 bits (1175),  Expect = 3e-162, Method: Composition-based stats.
 Identities = 141/297 (47%), Positives = 207/297 (70%), Gaps = 5/297 (2%)

Query  62   PVRRILSRKDHETFLASSTYTLVVSFTFSLSDSVRGRAVTDNKDQPASPNISRILSVIDT  121
            PV+RILS +D E F  S  Y  +++F   L+++V+G+ ++D    P S N+ ++L ++DT
Sbjct  1    PVKRILSPEDLEKFKRSQAYADILAFILQLNEAVQGKKLSD--SFPVSENVQKLLDLLDT  58

Query  122  IRQLVDKHPSIDQGGSRFGNPAFRDLFDDVAAQNATWHREII-GLQNADAIEEVSSYLVH  180
            +  L+D+ P +DQ  SRFGN AFRD  D +  +  +   E++       AI E+S YL+ 
Sbjct  59   LESLIDETPPVDQP-SRFGNKAFRDWHDKLEERAPSLLDELLPPELLGAAINELSPYLLE  117

Query  181  SLGSRDRLDYGSGHELNFMMWLLCLRQMQMISTADFPMIVFRVYLEYMRLMRQVQMTYYL  240
            S G+R R+DYG+GHEL+F+ +LLCL ++ +++  D   +V RV++ Y+ L+R++Q+TY+L
Sbjct  118  SFGNRTRIDYGTGHELSFLAFLLCLFKLGILTEEDERALVLRVFVRYLDLVRRLQLTYWL  177

Query  241  EPAGSHGVWGLDDYHFLPFLFGAAQLVDHPYITPLAIHNTAVLDEEGDKYIYLDQVRWVD  300
            EPAGSHGVWGLDDY FLPFLFG+AQL+ HPY+ P +IH+  +++E    Y+YL  + +++
Sbjct  178  EPAGSHGVWGLDDYQFLPFLFGSAQLIGHPYLKPKSIHDPEIVEEYRKDYLYLSCIAFIN  237

Query  301  SVKTVKGLRWHSPMLDDISGAKNWLKIEGGMKKMFIKEVLGKLPIMQHFLFGSLLPA  357
             VKT    R HSPML DISG K+W K+  GM KM+  EVLGK P++QHFLFGSLLP 
Sbjct  238  KVKTG-PFREHSPMLYDISGVKSWSKVNSGMIKMYKAEVLGKFPVVQHFLFGSLLPW  293



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00007661

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (P...  456     3e-162


>CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (PTPA) protein. 
 Phosphotyrosyl phosphatase activator (PTPA) proteins 
stimulate the phosphotyrosyl phosphatase (PTPase) activity 
of the dimeric form of protein phosphatase 2A (PP2A). PTPase 
activity in PP2A (in vitro) is relatively low when compared 
to the better recognized phosphoserine/ threonine protein phosphorylase 
activity. The specific biological role of PTPA 
is unknown, Basal expression of PTPA depends on the activity 
of a ubiquitous transcription factor, Yin Yang 1 (YY1). The 
tumor suppressor protein p53 can inhibit PTPA expression through 
an unknown mechanism that negatively controls YY1.
Length=293

 Score = 456 bits (1175),  Expect = 3e-162, Method: Composition-based stats.
 Identities = 141/297 (47%), Positives = 207/297 (70%), Gaps = 5/297 (2%)

Query  62   PVRRILSRKDHETFLASSTYTLVVSFTFSLSDSVRGRAVTDNKDQPASPNISRILSVIDT  121
            PV+RILS +D E F  S  Y  +++F   L+++V+G+ ++D    P S N+ ++L ++DT
Sbjct  1    PVKRILSPEDLEKFKRSQAYADILAFILQLNEAVQGKKLSD--SFPVSENVQKLLDLLDT  58

Query  122  IRQLVDKHPSIDQGGSRFGNPAFRDLFDDVAAQNATWHREII-GLQNADAIEEVSSYLVH  180
            +  L+D+ P +DQ  SRFGN AFRD  D +  +  +   E++       AI E+S YL+ 
Sbjct  59   LESLIDETPPVDQP-SRFGNKAFRDWHDKLEERAPSLLDELLPPELLGAAINELSPYLLE  117

Query  181  SLGSRDRLDYGSGHELNFMMWLLCLRQMQMISTADFPMIVFRVYLEYMRLMRQVQMTYYL  240
            S G+R R+DYG+GHEL+F+ +LLCL ++ +++  D   +V RV++ Y+ L+R++Q+TY+L
Sbjct  118  SFGNRTRIDYGTGHELSFLAFLLCLFKLGILTEEDERALVLRVFVRYLDLVRRLQLTYWL  177

Query  241  EPAGSHGVWGLDDYHFLPFLFGAAQLVDHPYITPLAIHNTAVLDEEGDKYIYLDQVRWVD  300
            EPAGSHGVWGLDDY FLPFLFG+AQL+ HPY+ P +IH+  +++E    Y+YL  + +++
Sbjct  178  EPAGSHGVWGLDDYQFLPFLFGSAQLIGHPYLKPKSIHDPEIVEEYRKDYLYLSCIAFIN  237

Query  301  SVKTVKGLRWHSPMLDDISGAKNWLKIEGGMKKMFIKEVLGKLPIMQHFLFGSLLPA  357
             VKT    R HSPML DISG K+W K+  GM KM+  EVLGK P++QHFLFGSLLP 
Sbjct  238  KVKTG-PFREHSPMLYDISGVKSWSKVNSGMIKMYKAEVLGKFPVVQHFLFGSLLPW  293



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00002299

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (P...  456     3e-162


>CDD:460802 pfam03095, PTPA, Phosphotyrosyl phosphate activator (PTPA) protein. 
 Phosphotyrosyl phosphatase activator (PTPA) proteins 
stimulate the phosphotyrosyl phosphatase (PTPase) activity 
of the dimeric form of protein phosphatase 2A (PP2A). PTPase 
activity in PP2A (in vitro) is relatively low when compared 
to the better recognized phosphoserine/ threonine protein phosphorylase 
activity. The specific biological role of PTPA 
is unknown, Basal expression of PTPA depends on the activity 
of a ubiquitous transcription factor, Yin Yang 1 (YY1). The 
tumor suppressor protein p53 can inhibit PTPA expression through 
an unknown mechanism that negatively controls YY1.
Length=293

 Score = 456 bits (1175),  Expect = 3e-162, Method: Composition-based stats.
 Identities = 141/297 (47%), Positives = 207/297 (70%), Gaps = 5/297 (2%)

Query  62   PVRRILSRKDHETFLASSTYTLVVSFTFSLSDSVRGRAVTDNKDQPASPNISRILSVIDT  121
            PV+RILS +D E F  S  Y  +++F   L+++V+G+ ++D    P S N+ ++L ++DT
Sbjct  1    PVKRILSPEDLEKFKRSQAYADILAFILQLNEAVQGKKLSD--SFPVSENVQKLLDLLDT  58

Query  122  IRQLVDKHPSIDQGGSRFGNPAFRDLFDDVAAQNATWHREII-GLQNADAIEEVSSYLVH  180
            +  L+D+ P +DQ  SRFGN AFRD  D +  +  +   E++       AI E+S YL+ 
Sbjct  59   LESLIDETPPVDQP-SRFGNKAFRDWHDKLEERAPSLLDELLPPELLGAAINELSPYLLE  117

Query  181  SLGSRDRLDYGSGHELNFMMWLLCLRQMQMISTADFPMIVFRVYLEYMRLMRQVQMTYYL  240
            S G+R R+DYG+GHEL+F+ +LLCL ++ +++  D   +V RV++ Y+ L+R++Q+TY+L
Sbjct  118  SFGNRTRIDYGTGHELSFLAFLLCLFKLGILTEEDERALVLRVFVRYLDLVRRLQLTYWL  177

Query  241  EPAGSHGVWGLDDYHFLPFLFGAAQLVDHPYITPLAIHNTAVLDEEGDKYIYLDQVRWVD  300
            EPAGSHGVWGLDDY FLPFLFG+AQL+ HPY+ P +IH+  +++E    Y+YL  + +++
Sbjct  178  EPAGSHGVWGLDDYQFLPFLFGSAQLIGHPYLKPKSIHDPEIVEEYRKDYLYLSCIAFIN  237

Query  301  SVKTVKGLRWHSPMLDDISGAKNWLKIEGGMKKMFIKEVLGKLPIMQHFLFGSLLPA  357
             VKT    R HSPML DISG K+W K+  GM KM+  EVLGK P++QHFLFGSLLP 
Sbjct  238  KVKTG-PFREHSPMLYDISGVKSWSKVNSGMIKMYKAEVLGKFPVVQHFLFGSLLPW  293



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00002300

Length=257


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00002301

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme...  647     0.0  


>CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme domain. 
 Copper amine oxidases are a ubiquitous and novel group of 
quinoenzymes that catalyze the oxidative deamination of primary 
amines to the corresponding aldehydes, with concomitant 
reduction of molecular oxygen to hydrogen peroxide. The enzymes 
are dimers of identical 70-90 kDa subunits, each of which 
contains a single copper ion and a covalently bound cofactor 
formed by the post-translational modification of a tyrosine 
side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). 
This family corresponds to the catalytic domain of the enzyme.
Length=403

 Score = 647 bits (1671),  Expect = 0.0, Method: Composition-based stats.
 Identities = 212/410 (52%), Positives = 264/410 (64%), Gaps = 12/410 (3%)

Query  196  YQVVQPDGPSFQVHGNLLTWEKWRMRVGFNYREGLTLHDITYDGRSVFYRLSLSEMFVPY  255
              +VQP+GPSF V GN + W+ W  RVGFN REGL LHD+ Y GR + YRLSLSEM VPY
Sbjct  1    PNIVQPEGPSFTVDGNYVEWQGWSFRVGFNPREGLVLHDVRYKGRRILYRLSLSEMVVPY  60

Query  256  GDSRAPYPRKAAFDLGSNLAGVNSNNLKLGCDCLGYIKYFDGYHHTSAGDPIVLPNVVCC  315
            GD   P+ RKAAFD G    G  +N+L LGCDC G I Y D     S G+P+ +PN +C 
Sbjct  61   GDPDPPHHRKAAFDSGEYGFGRLANSLVLGCDCPGNITYLDAVFADSDGEPVTIPNAICI  120

Query  316  HEIDDGILWKHTNYRTQNAVVTRSRILVLQTIITVGNYEYIFAFQFTQDASVTYEVRATG  375
            HE D G LWKHT++RT  A VTR+R LV+++I TVGNY+YIF + F QD ++  EVRATG
Sbjct  121  HEEDAGPLWKHTDFRTGRAEVTRNRRLVVRSIATVGNYDYIFDWIFYQDGTIEVEVRATG  180

Query  376  ILSTAPINLG-QTVPYGTIVAPGVMAPYHQHLFSLRIDPAIDGHMNSLMVEESHAMPLND  434
            ILSTA I+ G    PYGT VAPGV+   HQH F+ R+DP IDG  NS++  +    P+  
Sbjct  181  ILSTAAIDPGEDGSPYGTRVAPGVLGSNHQHFFNFRLDPDIDGTKNSVVEVDVVPWPVGP  240

Query  435  PSVHNPFGVGYTTVNHIVESET--PLDLDVTKGRVFKIINENVKNPMSGGPVGYKLVPH-  491
                NP+G  +     ++E+E     DLD +  R +KI+N N KN  SG PVGYKLVP  
Sbjct  241  ---ENPYGNAFKVERTVLETEKEAARDLDPSNPRYWKIVNPNKKN-KSGKPVGYKLVPGP  296

Query  492  YSQMVLAHPSSYHFKRSEFAEHAVWVTRYSDEERYSAGEHTMQSLGG-EGIYSWIRSRPA  550
              Q +LA P S   KR+ FA H +WVT+Y D+E Y+AG++  QS G   G+  WI     
Sbjct  297  AHQPLLADPDSSVAKRAAFARHHLWVTKYKDDELYAAGDYNNQSRGPPVGLAKWIADNE-  355

Query  551  PVSVRNEDIVIWHTFGTTHNPRVEDWPVMPAEKMSVTLKPVNFFWRNPAL  600
              S+ NEDIV+W TFG TH PR ED+PVMP E     L+P NFF RNPAL
Sbjct  356  --SIENEDIVLWVTFGLTHIPRPEDFPVMPVEHSGFLLRPFNFFDRNPAL  403



Lambda      K        H        a         alpha
   0.319    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 796386600


Query= TCONS_00007664

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme...  168     2e-51


>CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme domain. 
 Copper amine oxidases are a ubiquitous and novel group of 
quinoenzymes that catalyze the oxidative deamination of primary 
amines to the corresponding aldehydes, with concomitant 
reduction of molecular oxygen to hydrogen peroxide. The enzymes 
are dimers of identical 70-90 kDa subunits, each of which 
contains a single copper ion and a covalently bound cofactor 
formed by the post-translational modification of a tyrosine 
side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). 
This family corresponds to the catalytic domain of the enzyme.
Length=403

 Score = 168 bits (427),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 53/90 (59%), Positives = 62/90 (69%), Gaps = 0/90 (0%)

Query  79   YQVVQPDGPSFQVHGNLLTWEKWRMRVGFNYREGLTLHDITYDGRSVFYRLSLSEMFVPY  138
              +VQP+GPSF V GN + W+ W  RVGFN REGL LHD+ Y GR + YRLSLSEM VPY
Sbjct  1    PNIVQPEGPSFTVDGNYVEWQGWSFRVGFNPREGLVLHDVRYKGRRILYRLSLSEMVVPY  60

Query  139  GDSRAPYPRKAAFDLGSNLAGVNSNNLKLG  168
            GD   P+ RKAAFD G    G  +N+L LG
Sbjct  61   GDPDPPHHRKAAFDSGEYGFGRLANSLVLG  90



Lambda      K        H        a         alpha
   0.322    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00002302

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme...  641     0.0  


>CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme domain. 
 Copper amine oxidases are a ubiquitous and novel group of 
quinoenzymes that catalyze the oxidative deamination of primary 
amines to the corresponding aldehydes, with concomitant 
reduction of molecular oxygen to hydrogen peroxide. The enzymes 
are dimers of identical 70-90 kDa subunits, each of which 
contains a single copper ion and a covalently bound cofactor 
formed by the post-translational modification of a tyrosine 
side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). 
This family corresponds to the catalytic domain of the enzyme.
Length=403

 Score = 641 bits (1656),  Expect = 0.0, Method: Composition-based stats.
 Identities = 212/410 (52%), Positives = 264/410 (64%), Gaps = 12/410 (3%)

Query  79   YQVVQPDGPSFQVHGNLLTWEKWRMRVGFNYREGLTLHDITYDGRSVFYRLSLSEMFVPY  138
              +VQP+GPSF V GN + W+ W  RVGFN REGL LHD+ Y GR + YRLSLSEM VPY
Sbjct  1    PNIVQPEGPSFTVDGNYVEWQGWSFRVGFNPREGLVLHDVRYKGRRILYRLSLSEMVVPY  60

Query  139  GDSRAPYPRKAAFDLGSNLAGVNSNNLKLGCDCLGYIKYFDGYHHTSAGDPIVLPNVVCC  198
            GD   P+ RKAAFD G    G  +N+L LGCDC G I Y D     S G+P+ +PN +C 
Sbjct  61   GDPDPPHHRKAAFDSGEYGFGRLANSLVLGCDCPGNITYLDAVFADSDGEPVTIPNAICI  120

Query  199  HEIDDGILWKHTNYRTQNAVVTRSRILVLQTIITVGNYEYIFAFQFTQDASVTYEVRATG  258
            HE D G LWKHT++RT  A VTR+R LV+++I TVGNY+YIF + F QD ++  EVRATG
Sbjct  121  HEEDAGPLWKHTDFRTGRAEVTRNRRLVVRSIATVGNYDYIFDWIFYQDGTIEVEVRATG  180

Query  259  ILSTAPINLG-QTVPYGTIVAPGVMAPYHQHLFSLRIDPAIDGHMNSLMVEESHAMPLND  317
            ILSTA I+ G    PYGT VAPGV+   HQH F+ R+DP IDG  NS++  +    P+  
Sbjct  181  ILSTAAIDPGEDGSPYGTRVAPGVLGSNHQHFFNFRLDPDIDGTKNSVVEVDVVPWPVGP  240

Query  318  PSVHNPFGVGYTTVNHIVESET--PLDLDVTKGRVFKIINENVKNPMSGGPVGYKLVPH-  374
                NP+G  +     ++E+E     DLD +  R +KI+N N KN  SG PVGYKLVP  
Sbjct  241  ---ENPYGNAFKVERTVLETEKEAARDLDPSNPRYWKIVNPNKKN-KSGKPVGYKLVPGP  296

Query  375  YSQMVLAHPSSYHFKRSEFAEHAVWVTRYSDEERYSAGEHTMQSLGG-EGIYSWIRSRPA  433
              Q +LA P S   KR+ FA H +WVT+Y D+E Y+AG++  QS G   G+  WI     
Sbjct  297  AHQPLLADPDSSVAKRAAFARHHLWVTKYKDDELYAAGDYNNQSRGPPVGLAKWIADNE-  355

Query  434  PVSVRNEDIVIWHTFGTTHNPRVEDWPVMPAEKMSVTLKPVNFFWRNPAL  483
              S+ NEDIV+W TFG TH PR ED+PVMP E     L+P NFF RNPAL
Sbjct  356  --SIENEDIVLWVTFGLTHIPRPEDFPVMPVEHSGFLLRPFNFFDRNPAL  403



Lambda      K        H        a         alpha
   0.320    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00002303

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme...  532     0.0  


>CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme domain. 
 Copper amine oxidases are a ubiquitous and novel group of 
quinoenzymes that catalyze the oxidative deamination of primary 
amines to the corresponding aldehydes, with concomitant 
reduction of molecular oxygen to hydrogen peroxide. The enzymes 
are dimers of identical 70-90 kDa subunits, each of which 
contains a single copper ion and a covalently bound cofactor 
formed by the post-translational modification of a tyrosine 
side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). 
This family corresponds to the catalytic domain of the enzyme.
Length=403

 Score = 532 bits (1372),  Expect = 0.0, Method: Composition-based stats.
 Identities = 178/355 (50%), Positives = 224/355 (63%), Gaps = 12/355 (3%)

Query  1    MFVPYGDSRAPYPRKAAFDLGSNLAGVNSNNLKLGCDCLGYIKYFDGYHHTSAGDPIVLP  60
            M VPYGD   P+ RKAAFD G    G  +N+L LGCDC G I Y D     S G+P+ +P
Sbjct  56   MVVPYGDPDPPHHRKAAFDSGEYGFGRLANSLVLGCDCPGNITYLDAVFADSDGEPVTIP  115

Query  61   NVVCCHEIDDGILWKHTNYRTQNAVVTRSRILVLQTIITVGNYEYIFAFQFTQDASVTYE  120
            N +C HE D G LWKHT++RT  A VTR+R LV+++I TVGNY+YIF + F QD ++  E
Sbjct  116  NAICIHEEDAGPLWKHTDFRTGRAEVTRNRRLVVRSIATVGNYDYIFDWIFYQDGTIEVE  175

Query  121  VRATGILSTAPINLG-QTVPYGTIVAPGVMAPYHQHLFSLRIDPAIDGHMNSLMVEESHA  179
            VRATGILSTA I+ G    PYGT VAPGV+   HQH F+ R+DP IDG  NS++  +   
Sbjct  176  VRATGILSTAAIDPGEDGSPYGTRVAPGVLGSNHQHFFNFRLDPDIDGTKNSVVEVDVVP  235

Query  180  MPLNDPSVHNPFGVGYTTVNHIVESET--PLDLDVTKGRVFKIINENVKNPMSGGPVGYK  237
             P+      NP+G  +     ++E+E     DLD +  R +KI+N N KN  SG PVGYK
Sbjct  236  WPVGP---ENPYGNAFKVERTVLETEKEAARDLDPSNPRYWKIVNPNKKN-KSGKPVGYK  291

Query  238  LVPH-YSQMVLAHPSSYHFKRSEFAEHAVWVTRYSDEERYSAGEHTMQSLGG-EGIYSWI  295
            LVP    Q +LA P S   KR+ FA H +WVT+Y D+E Y+AG++  QS G   G+  WI
Sbjct  292  LVPGPAHQPLLADPDSSVAKRAAFARHHLWVTKYKDDELYAAGDYNNQSRGPPVGLAKWI  351

Query  296  RSRPAPVSVRNEDIVIWHTFGTTHNPRVEDWPVMPAEKMSVTLKPVNFFWRNPAL  350
                   S+ NEDIV+W TFG TH PR ED+PVMP E     L+P NFF RNPAL
Sbjct  352  ADNE---SIENEDIVLWVTFGLTHIPRPEDFPVMPVEHSGFLLRPFNFFDRNPAL  403



Lambda      K        H        a         alpha
   0.319    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00007665

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme...  278     2e-93


>CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme domain. 
 Copper amine oxidases are a ubiquitous and novel group of 
quinoenzymes that catalyze the oxidative deamination of primary 
amines to the corresponding aldehydes, with concomitant 
reduction of molecular oxygen to hydrogen peroxide. The enzymes 
are dimers of identical 70-90 kDa subunits, each of which 
contains a single copper ion and a covalently bound cofactor 
formed by the post-translational modification of a tyrosine 
side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). 
This family corresponds to the catalytic domain of the enzyme.
Length=403

 Score = 278 bits (713),  Expect = 2e-93, Method: Composition-based stats.
 Identities = 94/206 (46%), Positives = 122/206 (59%), Gaps = 11/206 (5%)

Query  1    MAPYHQHLFSLRIDPAIDGHMNSLMVEESHAMPLNDPSVHNPFGVGYTTVNHIVESET--  58
            +   HQH F+ R+DP IDG  NS++  +    P+      NP+G  +     ++E+E   
Sbjct  205  LGSNHQHFFNFRLDPDIDGTKNSVVEVDVVPWPVGP---ENPYGNAFKVERTVLETEKEA  261

Query  59   PLDLDVTKGRVFKIINENVKNPMSGGPVGYKLVPH-YSQMVLAHPSSYHFKRSEFAEHAV  117
              DLD +  R +KI+N N KN  SG PVGYKLVP    Q +LA P S   KR+ FA H +
Sbjct  262  ARDLDPSNPRYWKIVNPNKKN-KSGKPVGYKLVPGPAHQPLLADPDSSVAKRAAFARHHL  320

Query  118  WVTRYSDEERYSAGEHTMQSLGG-EGIYSWIRSRPAPVSVRNEDIVIWHTFGTTHNPRVE  176
            WVT+Y D+E Y+AG++  QS G   G+  WI       S+ NEDIV+W TFG TH PR E
Sbjct  321  WVTKYKDDELYAAGDYNNQSRGPPVGLAKWIADNE---SIENEDIVLWVTFGLTHIPRPE  377

Query  177  DWPVMPAEKMSVTLKPVNFFWRNPAL  202
            D+PVMP E     L+P NFF RNPAL
Sbjct  378  DFPVMPVEHSGFLLRPFNFFDRNPAL  403



Lambda      K        H        a         alpha
   0.317    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00002304

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme...  278     2e-93


>CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme domain. 
 Copper amine oxidases are a ubiquitous and novel group of 
quinoenzymes that catalyze the oxidative deamination of primary 
amines to the corresponding aldehydes, with concomitant 
reduction of molecular oxygen to hydrogen peroxide. The enzymes 
are dimers of identical 70-90 kDa subunits, each of which 
contains a single copper ion and a covalently bound cofactor 
formed by the post-translational modification of a tyrosine 
side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). 
This family corresponds to the catalytic domain of the enzyme.
Length=403

 Score = 278 bits (713),  Expect = 2e-93, Method: Composition-based stats.
 Identities = 94/206 (46%), Positives = 122/206 (59%), Gaps = 11/206 (5%)

Query  1    MAPYHQHLFSLRIDPAIDGHMNSLMVEESHAMPLNDPSVHNPFGVGYTTVNHIVESET--  58
            +   HQH F+ R+DP IDG  NS++  +    P+      NP+G  +     ++E+E   
Sbjct  205  LGSNHQHFFNFRLDPDIDGTKNSVVEVDVVPWPVGP---ENPYGNAFKVERTVLETEKEA  261

Query  59   PLDLDVTKGRVFKIINENVKNPMSGGPVGYKLVPH-YSQMVLAHPSSYHFKRSEFAEHAV  117
              DLD +  R +KI+N N KN  SG PVGYKLVP    Q +LA P S   KR+ FA H +
Sbjct  262  ARDLDPSNPRYWKIVNPNKKN-KSGKPVGYKLVPGPAHQPLLADPDSSVAKRAAFARHHL  320

Query  118  WVTRYSDEERYSAGEHTMQSLGG-EGIYSWIRSRPAPVSVRNEDIVIWHTFGTTHNPRVE  176
            WVT+Y D+E Y+AG++  QS G   G+  WI       S+ NEDIV+W TFG TH PR E
Sbjct  321  WVTKYKDDELYAAGDYNNQSRGPPVGLAKWIADNE---SIENEDIVLWVTFGLTHIPRPE  377

Query  177  DWPVMPAEKMSVTLKPVNFFWRNPAL  202
            D+PVMP E     L+P NFF RNPAL
Sbjct  378  DFPVMPVEHSGFLLRPFNFFDRNPAL  403



Lambda      K        H        a         alpha
   0.317    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00007667

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme...  278     2e-93


>CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme domain. 
 Copper amine oxidases are a ubiquitous and novel group of 
quinoenzymes that catalyze the oxidative deamination of primary 
amines to the corresponding aldehydes, with concomitant 
reduction of molecular oxygen to hydrogen peroxide. The enzymes 
are dimers of identical 70-90 kDa subunits, each of which 
contains a single copper ion and a covalently bound cofactor 
formed by the post-translational modification of a tyrosine 
side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). 
This family corresponds to the catalytic domain of the enzyme.
Length=403

 Score = 278 bits (713),  Expect = 2e-93, Method: Composition-based stats.
 Identities = 94/206 (46%), Positives = 122/206 (59%), Gaps = 11/206 (5%)

Query  1    MAPYHQHLFSLRIDPAIDGHMNSLMVEESHAMPLNDPSVHNPFGVGYTTVNHIVESET--  58
            +   HQH F+ R+DP IDG  NS++  +    P+      NP+G  +     ++E+E   
Sbjct  205  LGSNHQHFFNFRLDPDIDGTKNSVVEVDVVPWPVGP---ENPYGNAFKVERTVLETEKEA  261

Query  59   PLDLDVTKGRVFKIINENVKNPMSGGPVGYKLVPH-YSQMVLAHPSSYHFKRSEFAEHAV  117
              DLD +  R +KI+N N KN  SG PVGYKLVP    Q +LA P S   KR+ FA H +
Sbjct  262  ARDLDPSNPRYWKIVNPNKKN-KSGKPVGYKLVPGPAHQPLLADPDSSVAKRAAFARHHL  320

Query  118  WVTRYSDEERYSAGEHTMQSLGG-EGIYSWIRSRPAPVSVRNEDIVIWHTFGTTHNPRVE  176
            WVT+Y D+E Y+AG++  QS G   G+  WI       S+ NEDIV+W TFG TH PR E
Sbjct  321  WVTKYKDDELYAAGDYNNQSRGPPVGLAKWIADNE---SIENEDIVLWVTFGLTHIPRPE  377

Query  177  DWPVMPAEKMSVTLKPVNFFWRNPAL  202
            D+PVMP E     L+P NFF RNPAL
Sbjct  378  DFPVMPVEHSGFLLRPFNFFDRNPAL  403



Lambda      K        H        a         alpha
   0.317    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00002309

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00002310

Length=96
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460757 pfam02939, UcrQ, UcrQ family. The ubiquinol-cytochrome...  123     4e-39


>CDD:460757 pfam02939, UcrQ, UcrQ family.  The ubiquinol-cytochrome C reductase 
complex (cytochrome bc1 complex) is a respiratory multienzyme 
complex. This family represents the 9.5 kDa subunit 
of the complex.
Length=76

 Score = 123 bits (310),  Expect = 4e-39, Method: Composition-based stats.
 Identities = 48/78 (62%), Positives = 53/78 (68%), Gaps = 4/78 (5%)

Query  16  WGELGCPTPQR-IVTYSLSSNRQRPLAGAFHAAIFNTFRRFRSQVLYVVPPFVVAYAAMN  74
           WG LG    Q+ I+TYSLS   Q+  AGAF  AIFNTFRR RSQVLYV PPF++ Y    
Sbjct  2   WGNLG---KQKGIITYSLSPFEQKAFAGAFSNAIFNTFRRTRSQVLYVAPPFIIGYLIYT  58

Query  75  WAIERNEYLNSKPGRLAE  92
           WA ERNEYLN K GR  E
Sbjct  59  WAKERNEYLNRKAGRDYE  76



Lambda      K        H        a         alpha
   0.321    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00002311

Length=172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396237 pfam01564, Spermine_synth, Spermine/spermidine synthas...  106     6e-30
CDD:407397 pfam17284, Spermine_synt_N, Spermidine synthase tetram...  86.6    9e-24


>CDD:396237 pfam01564, Spermine_synth, Spermine/spermidine synthase domain. 
 Spermine and spermidine are polyamines. This family includes 
spermidine synthase that catalyzes the fifth (last) step 
in the biosynthesis of spermidine from arginine, and spermine 
synthase.
Length=183

 Score = 106 bits (266),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 39/52 (75%), Positives = 43/52 (83%), Gaps = 0/52 (0%)

Query  115  EFSYQEMITHLAMNSHPNPKKVLVIGGGDGGVLREVVKHESVEEAILCDIDE  166
            EF Y EMI H+ + SHPNPKKVL+IGGGDGGVLREVVKH SVE+  L DIDE
Sbjct  1    EFIYHEMIAHVPLCSHPNPKKVLIIGGGDGGVLREVVKHPSVEKITLVDIDE  52


>CDD:407397 pfam17284, Spermine_synt_N, Spermidine synthase tetramerisation 
domain.  This domain represents the N-terminal tetramerization 
domain from spermidine synthase.
Length=53

 Score = 86.6 bits (215),  Expect = 9e-24, Method: Composition-based stats.
 Identities = 30/55 (55%), Positives = 40/55 (73%), Gaps = 2/55 (4%)

Query  58   GWFSEQSDMWPGQAMNLKVNQILHHEKSKYQDVLVFESTDYGTVLVLDNVIQCTE  112
            GWF+E  D   GQA+  KV ++L+ EKS+YQD+ +FES  +G VLVLD V+Q TE
Sbjct  1    GWFTEIHD--LGQALEYKVEKVLYDEKSEYQDIEIFESKTFGNVLVLDGVVQLTE  53



Lambda      K        H        a         alpha
   0.320    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00007669

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  192     2e-59
CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine di...  187     1e-55


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 192 bits (490),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 68/182 (37%), Positives = 92/182 (51%), Gaps = 11/182 (6%)

Query  150  AAVASRKLSEAVLEKIHAVVPELMSGSADLTGSNNTRWKNAVDFQPPEYGIGEWSGRYIR  209
              +A+RK S   L ++    P ++ G ADL G   T  K  +  Q          GR I 
Sbjct  1    KKIATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLHPQGA--------GRVID  52

Query  210  YGVREHAMAAVMNGLAAYG-TIIPAGGTFLNFVSYAAGALR-LSALSRVRVIHIATHDSI  267
             G+ E AM    NG+A +G  + P   TF +F++ A  A+R  +AL ++ V  + T D I
Sbjct  53   TGIAEQAMVGFANGMALHGPLLPPVEATFSDFLNRADDAIRHGAALGKLPVPFVVTRDPI  112

Query  268  GLGEDGPTHQPIETLAHFRALPNCMVWRPADGNETSAAYYSAITAKH-TPSVLALTRQNL  326
            G+GEDGPTHQ +E LA  RA+P   V RP+D  ET     +AI      P VL L RQ L
Sbjct  113  GVGEDGPTHQSVEDLAFLRAIPGLKVVRPSDAAETKGLLRAAIRRDGRKPVVLRLPRQLL  172

Query  327  PQ  328
              
Sbjct  173  RP  174


>CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate 
binding domain.  This family includes transketolase enzymes 
EC:2.2.1.1. and also partially matches to 2-oxoisovalerate 
dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes 
utilize thiamine pyrophosphate as a cofactor, suggesting there 
may be common aspects in their mechanism of catalysis.
Length=334

 Score = 187 bits (477),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 69/135 (51%), Positives = 87/135 (64%), Gaps = 2/135 (1%)

Query  2    KRFEAYGWHTVWVKDGDNDLEGIEAAIHEAKKVTDKPTVIRLTTTIGFGSKL-QGTGGVH  60
             RFEAYGWH + V+DG  D+E I AAI EAK   DKPT+I+  T IG+GS   QGT  VH
Sbjct  201  ARFEAYGWHVIEVEDGH-DVEAIAAAIEEAKAEKDKPTLIKCRTVIGYGSPNKQGTHDVH  259

Query  61   GNPLKADDCESVKQKFGFDPKQSFVVPQQVYDLYHKHAAEGAAKEQAWNQLLEKYATEYK  120
            G PL AD+  ++KQK G+DP + F +P +VYD + +  AEGA  E  WN+L   Y   Y 
Sbjct  260  GAPLGADEVAALKQKLGWDPYKPFEIPAEVYDAWKEKVAEGAKAEAEWNELFAAYKKAYP  319

Query  121  AEHADLVRRLSGKLP  135
               A+  RRLSG+LP
Sbjct  320  ELAAEFARRLSGELP  334



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 637421786


Query= TCONS_00002312

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  192     2e-59
CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine di...  187     1e-55


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 192 bits (490),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 68/182 (37%), Positives = 92/182 (51%), Gaps = 11/182 (6%)

Query  150  AAVASRKLSEAVLEKIHAVVPELMSGSADLTGSNNTRWKNAVDFQPPEYGIGEWSGRYIR  209
              +A+RK S   L ++    P ++ G ADL G   T  K  +  Q          GR I 
Sbjct  1    KKIATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLHPQGA--------GRVID  52

Query  210  YGVREHAMAAVMNGLAAYG-TIIPAGGTFLNFVSYAAGALR-LSALSRVRVIHIATHDSI  267
             G+ E AM    NG+A +G  + P   TF +F++ A  A+R  +AL ++ V  + T D I
Sbjct  53   TGIAEQAMVGFANGMALHGPLLPPVEATFSDFLNRADDAIRHGAALGKLPVPFVVTRDPI  112

Query  268  GLGEDGPTHQPIETLAHFRALPNCMVWRPADGNETSAAYYSAITAKH-TPSVLALTRQNL  326
            G+GEDGPTHQ +E LA  RA+P   V RP+D  ET     +AI      P VL L RQ L
Sbjct  113  GVGEDGPTHQSVEDLAFLRAIPGLKVVRPSDAAETKGLLRAAIRRDGRKPVVLRLPRQLL  172

Query  327  PQ  328
              
Sbjct  173  RP  174


>CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate 
binding domain.  This family includes transketolase enzymes 
EC:2.2.1.1. and also partially matches to 2-oxoisovalerate 
dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes 
utilize thiamine pyrophosphate as a cofactor, suggesting there 
may be common aspects in their mechanism of catalysis.
Length=334

 Score = 187 bits (477),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 69/135 (51%), Positives = 87/135 (64%), Gaps = 2/135 (1%)

Query  2    KRFEAYGWHTVWVKDGDNDLEGIEAAIHEAKKVTDKPTVIRLTTTIGFGSKL-QGTGGVH  60
             RFEAYGWH + V+DG  D+E I AAI EAK   DKPT+I+  T IG+GS   QGT  VH
Sbjct  201  ARFEAYGWHVIEVEDGH-DVEAIAAAIEEAKAEKDKPTLIKCRTVIGYGSPNKQGTHDVH  259

Query  61   GNPLKADDCESVKQKFGFDPKQSFVVPQQVYDLYHKHAAEGAAKEQAWNQLLEKYATEYK  120
            G PL AD+  ++KQK G+DP + F +P +VYD + +  AEGA  E  WN+L   Y   Y 
Sbjct  260  GAPLGADEVAALKQKLGWDPYKPFEIPAEVYDAWKEKVAEGAKAEAEWNELFAAYKKAYP  319

Query  121  AEHADLVRRLSGKLP  135
               A+  RRLSG+LP
Sbjct  320  ELAAEFARRLSGELP  334



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 637421786


Query= TCONS_00002313

Length=84
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460757 pfam02939, UcrQ, UcrQ family. The ubiquinol-cytochrome...  117     4e-37


>CDD:460757 pfam02939, UcrQ, UcrQ family.  The ubiquinol-cytochrome C reductase 
complex (cytochrome bc1 complex) is a respiratory multienzyme 
complex. This family represents the 9.5 kDa subunit 
of the complex.
Length=76

 Score = 117 bits (296),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 45/74 (61%), Positives = 50/74 (68%), Gaps = 1/74 (1%)

Query  8   GCPTPQR-IVTYSLSSNRQRPLAGAFHAAIFNTFRRFRSQVLYVVPPFVVAYAAMNWAIE  66
           G    Q+ I+TYSLS   Q+  AGAF  AIFNTFRR RSQVLYV PPF++ Y    WA E
Sbjct  3   GNLGKQKGIITYSLSPFEQKAFAGAFSNAIFNTFRRTRSQVLYVAPPFIIGYLIYTWAKE  62

Query  67  RNEYLNSKPGRLAE  80
           RNEYLN K GR  E
Sbjct  63  RNEYLNRKAGRDYE  76



Lambda      K        H        a         alpha
   0.326    0.139    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0772    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00002314

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396237 pfam01564, Spermine_synth, Spermine/spermidine synthas...  292     3e-101
CDD:407397 pfam17284, Spermine_synt_N, Spermidine synthase tetram...  85.4    3e-22 


>CDD:396237 pfam01564, Spermine_synth, Spermine/spermidine synthase domain. 
 Spermine and spermidine are polyamines. This family includes 
spermidine synthase that catalyzes the fifth (last) step 
in the biosynthesis of spermidine from arginine, and spermine 
synthase.
Length=183

 Score = 292 bits (749),  Expect = 3e-101, Method: Composition-based stats.
 Identities = 116/179 (65%), Positives = 137/179 (77%), Gaps = 0/179 (0%)

Query  115  EFSYQEMITHLAMNSHPNPKKVLVIGGGDGGVLREVVKHESVEEAILCDIDEAVIRVSKK  174
            EF Y EMI H+ + SHPNPKKVL+IGGGDGGVLREVVKH SVE+  L DIDE VI  SKK
Sbjct  1    EFIYHEMIAHVPLCSHPNPKKVLIIGGGDGGVLREVVKHPSVEKITLVDIDEKVIDFSKK  60

Query  175  YLPGMSIGFQHPNVKVHIGDGFQFLKERKNEFDVIITDSSDPEGPAESLFQKPYFELLRD  234
            +LP ++IGFQ P VKV IGDGF+FLK+  N FDVII DS+DP GPAE+LF KP+F+LL+ 
Sbjct  61   FLPSLAIGFQDPRVKVVIGDGFKFLKDYLNTFDVIIVDSTDPVGPAENLFSKPFFDLLKK  120

Query  235  ALRDGGVITTQAENQWLHLSLITDLKKACKEVFPVAEYAYTTIPTYPSGQIGFMVCCKD  293
            AL++ GV  TQAE+ WLHL LI ++ K  K+VFPV      TIPTYPSG  GF VC K+
Sbjct  121  ALKEDGVFITQAESPWLHLELIINILKNGKQVFPVVMPYVATIPTYPSGGWGFTVCSKN  179


>CDD:407397 pfam17284, Spermine_synt_N, Spermidine synthase tetramerisation 
domain.  This domain represents the N-terminal tetramerization 
domain from spermidine synthase.
Length=53

 Score = 85.4 bits (212),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 30/55 (55%), Positives = 40/55 (73%), Gaps = 2/55 (4%)

Query  58   GWFSEQSDMWPGQAMNLKVNQILHHEKSKYQDVLVFESTDYGTVLVLDNVIQCTE  112
            GWF+E  D   GQA+  KV ++L+ EKS+YQD+ +FES  +G VLVLD V+Q TE
Sbjct  1    GWFTEIHD--LGQALEYKVEKVLYDEKSEYQDIEIFESKTFGNVLVLDGVVQLTE  53



Lambda      K        H        a         alpha
   0.320    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00007670

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  192     2e-59
CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine di...  187     1e-55


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 192 bits (490),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 68/182 (37%), Positives = 92/182 (51%), Gaps = 11/182 (6%)

Query  150  AAVASRKLSEAVLEKIHAVVPELMSGSADLTGSNNTRWKNAVDFQPPEYGIGEWSGRYIR  209
              +A+RK S   L ++    P ++ G ADL G   T  K  +  Q          GR I 
Sbjct  1    KKIATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLHPQGA--------GRVID  52

Query  210  YGVREHAMAAVMNGLAAYG-TIIPAGGTFLNFVSYAAGALR-LSALSRVRVIHIATHDSI  267
             G+ E AM    NG+A +G  + P   TF +F++ A  A+R  +AL ++ V  + T D I
Sbjct  53   TGIAEQAMVGFANGMALHGPLLPPVEATFSDFLNRADDAIRHGAALGKLPVPFVVTRDPI  112

Query  268  GLGEDGPTHQPIETLAHFRALPNCMVWRPADGNETSAAYYSAITAKH-TPSVLALTRQNL  326
            G+GEDGPTHQ +E LA  RA+P   V RP+D  ET     +AI      P VL L RQ L
Sbjct  113  GVGEDGPTHQSVEDLAFLRAIPGLKVVRPSDAAETKGLLRAAIRRDGRKPVVLRLPRQLL  172

Query  327  PQ  328
              
Sbjct  173  RP  174


>CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate 
binding domain.  This family includes transketolase enzymes 
EC:2.2.1.1. and also partially matches to 2-oxoisovalerate 
dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes 
utilize thiamine pyrophosphate as a cofactor, suggesting there 
may be common aspects in their mechanism of catalysis.
Length=334

 Score = 187 bits (477),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 69/135 (51%), Positives = 87/135 (64%), Gaps = 2/135 (1%)

Query  2    KRFEAYGWHTVWVKDGDNDLEGIEAAIHEAKKVTDKPTVIRLTTTIGFGSKL-QGTGGVH  60
             RFEAYGWH + V+DG  D+E I AAI EAK   DKPT+I+  T IG+GS   QGT  VH
Sbjct  201  ARFEAYGWHVIEVEDGH-DVEAIAAAIEEAKAEKDKPTLIKCRTVIGYGSPNKQGTHDVH  259

Query  61   GNPLKADDCESVKQKFGFDPKQSFVVPQQVYDLYHKHAAEGAAKEQAWNQLLEKYATEYK  120
            G PL AD+  ++KQK G+DP + F +P +VYD + +  AEGA  E  WN+L   Y   Y 
Sbjct  260  GAPLGADEVAALKQKLGWDPYKPFEIPAEVYDAWKEKVAEGAKAEAEWNELFAAYKKAYP  319

Query  121  AEHADLVRRLSGKLP  135
               A+  RRLSG+LP
Sbjct  320  ELAAEFARRLSGELP  334



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 637421786


Query= TCONS_00002315

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  192     2e-59
CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine di...  187     1e-55


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 192 bits (490),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 68/182 (37%), Positives = 92/182 (51%), Gaps = 11/182 (6%)

Query  150  AAVASRKLSEAVLEKIHAVVPELMSGSADLTGSNNTRWKNAVDFQPPEYGIGEWSGRYIR  209
              +A+RK S   L ++    P ++ G ADL G   T  K  +  Q          GR I 
Sbjct  1    KKIATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLHPQGA--------GRVID  52

Query  210  YGVREHAMAAVMNGLAAYG-TIIPAGGTFLNFVSYAAGALR-LSALSRVRVIHIATHDSI  267
             G+ E AM    NG+A +G  + P   TF +F++ A  A+R  +AL ++ V  + T D I
Sbjct  53   TGIAEQAMVGFANGMALHGPLLPPVEATFSDFLNRADDAIRHGAALGKLPVPFVVTRDPI  112

Query  268  GLGEDGPTHQPIETLAHFRALPNCMVWRPADGNETSAAYYSAITAKH-TPSVLALTRQNL  326
            G+GEDGPTHQ +E LA  RA+P   V RP+D  ET     +AI      P VL L RQ L
Sbjct  113  GVGEDGPTHQSVEDLAFLRAIPGLKVVRPSDAAETKGLLRAAIRRDGRKPVVLRLPRQLL  172

Query  327  PQ  328
              
Sbjct  173  RP  174


>CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate 
binding domain.  This family includes transketolase enzymes 
EC:2.2.1.1. and also partially matches to 2-oxoisovalerate 
dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes 
utilize thiamine pyrophosphate as a cofactor, suggesting there 
may be common aspects in their mechanism of catalysis.
Length=334

 Score = 187 bits (477),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 69/135 (51%), Positives = 87/135 (64%), Gaps = 2/135 (1%)

Query  2    KRFEAYGWHTVWVKDGDNDLEGIEAAIHEAKKVTDKPTVIRLTTTIGFGSKL-QGTGGVH  60
             RFEAYGWH + V+DG  D+E I AAI EAK   DKPT+I+  T IG+GS   QGT  VH
Sbjct  201  ARFEAYGWHVIEVEDGH-DVEAIAAAIEEAKAEKDKPTLIKCRTVIGYGSPNKQGTHDVH  259

Query  61   GNPLKADDCESVKQKFGFDPKQSFVVPQQVYDLYHKHAAEGAAKEQAWNQLLEKYATEYK  120
            G PL AD+  ++KQK G+DP + F +P +VYD + +  AEGA  E  WN+L   Y   Y 
Sbjct  260  GAPLGADEVAALKQKLGWDPYKPFEIPAEVYDAWKEKVAEGAKAEAEWNELFAAYKKAYP  319

Query  121  AEHADLVRRLSGKLP  135
               A+  RRLSG+LP
Sbjct  320  ELAAEFARRLSGELP  334



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 637421786


Query= TCONS_00002316

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  192     2e-59
CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine di...  187     1e-55


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 192 bits (490),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 68/182 (37%), Positives = 92/182 (51%), Gaps = 11/182 (6%)

Query  150  AAVASRKLSEAVLEKIHAVVPELMSGSADLTGSNNTRWKNAVDFQPPEYGIGEWSGRYIR  209
              +A+RK S   L ++    P ++ G ADL G   T  K  +  Q          GR I 
Sbjct  1    KKIATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLHPQGA--------GRVID  52

Query  210  YGVREHAMAAVMNGLAAYG-TIIPAGGTFLNFVSYAAGALR-LSALSRVRVIHIATHDSI  267
             G+ E AM    NG+A +G  + P   TF +F++ A  A+R  +AL ++ V  + T D I
Sbjct  53   TGIAEQAMVGFANGMALHGPLLPPVEATFSDFLNRADDAIRHGAALGKLPVPFVVTRDPI  112

Query  268  GLGEDGPTHQPIETLAHFRALPNCMVWRPADGNETSAAYYSAITAKH-TPSVLALTRQNL  326
            G+GEDGPTHQ +E LA  RA+P   V RP+D  ET     +AI      P VL L RQ L
Sbjct  113  GVGEDGPTHQSVEDLAFLRAIPGLKVVRPSDAAETKGLLRAAIRRDGRKPVVLRLPRQLL  172

Query  327  PQ  328
              
Sbjct  173  RP  174


>CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate 
binding domain.  This family includes transketolase enzymes 
EC:2.2.1.1. and also partially matches to 2-oxoisovalerate 
dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes 
utilize thiamine pyrophosphate as a cofactor, suggesting there 
may be common aspects in their mechanism of catalysis.
Length=334

 Score = 187 bits (477),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 69/135 (51%), Positives = 87/135 (64%), Gaps = 2/135 (1%)

Query  2    KRFEAYGWHTVWVKDGDNDLEGIEAAIHEAKKVTDKPTVIRLTTTIGFGSKL-QGTGGVH  60
             RFEAYGWH + V+DG  D+E I AAI EAK   DKPT+I+  T IG+GS   QGT  VH
Sbjct  201  ARFEAYGWHVIEVEDGH-DVEAIAAAIEEAKAEKDKPTLIKCRTVIGYGSPNKQGTHDVH  259

Query  61   GNPLKADDCESVKQKFGFDPKQSFVVPQQVYDLYHKHAAEGAAKEQAWNQLLEKYATEYK  120
            G PL AD+  ++KQK G+DP + F +P +VYD + +  AEGA  E  WN+L   Y   Y 
Sbjct  260  GAPLGADEVAALKQKLGWDPYKPFEIPAEVYDAWKEKVAEGAKAEAEWNELFAAYKKAYP  319

Query  121  AEHADLVRRLSGKLP  135
               A+  RRLSG+LP
Sbjct  320  ELAAEFARRLSGELP  334



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 637421786


Query= TCONS_00002317

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396237 pfam01564, Spermine_synth, Spermine/spermidine synthas...  288     1e-99
CDD:407397 pfam17284, Spermine_synt_N, Spermidine synthase tetram...  83.1    2e-21


>CDD:396237 pfam01564, Spermine_synth, Spermine/spermidine synthase domain. 
 Spermine and spermidine are polyamines. This family includes 
spermidine synthase that catalyzes the fifth (last) step 
in the biosynthesis of spermidine from arginine, and spermine 
synthase.
Length=183

 Score = 288 bits (738),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 116/184 (63%), Positives = 139/184 (76%), Gaps = 1/184 (1%)

Query  69   EFSYQEMITHLAMNSHPNPKKVLVIGGGDGGVLREVVKHESVEEAILCDIDEAVIRVSKK  128
            EF Y EMI H+ + SHPNPKKVL+IGGGDGGVLREVVKH SVE+  L DIDE VI  SKK
Sbjct  1    EFIYHEMIAHVPLCSHPNPKKVLIIGGGDGGVLREVVKHPSVEKITLVDIDEKVIDFSKK  60

Query  129  YLPGMSIGFQHPNVKVHIGDGFQFLKERKNEFDVIITDSSDPEGPAESLFQKPYFELLRD  188
            +LP ++IGFQ P VKV IGDGF+FLK+  N FDVII DS+DP GPAE+LF KP+F+LL+ 
Sbjct  61   FLPSLAIGFQDPRVKVVIGDGFKFLKDYLNTFDVIIVDSTDPVGPAENLFSKPFFDLLKK  120

Query  189  ALRDGGVITTQGSENQWLHLSLITDLKKACKEVFPVAEYAYTTIPTYPSGQIGFMVCCKD  248
            AL++ GV  TQ +E+ WLHL LI ++ K  K+VFPV      TIPTYPSG  GF VC K+
Sbjct  121  ALKEDGVFITQ-AESPWLHLELIINILKNGKQVFPVVMPYVATIPTYPSGGWGFTVCSKN  179

Query  249  ATRN  252
              +N
Sbjct  180  PLKN  183


>CDD:407397 pfam17284, Spermine_synt_N, Spermidine synthase tetramerisation 
domain.  This domain represents the N-terminal tetramerization 
domain from spermidine synthase.
Length=53

 Score = 83.1 bits (206),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 30/55 (55%), Positives = 40/55 (73%), Gaps = 2/55 (4%)

Query  12  GWFSEQSDMWPGQAMNLKVNQILHHEKSKYQDVLVFESTDYGTVLVLDNVIQCTE  66
           GWF+E  D   GQA+  KV ++L+ EKS+YQD+ +FES  +G VLVLD V+Q TE
Sbjct  1   GWFTEIHD--LGQALEYKVEKVLYDEKSEYQDIEIFESKTFGNVLVLDGVVQLTE  53



Lambda      K        H        a         alpha
   0.319    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00007674

Length=250


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00007675

Length=250


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00007676

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00007677

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00002318

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00002319

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00007678

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00002320

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.124    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00007679

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.125    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00002321

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.125    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00007680

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.125    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00002322

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.125    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00002323

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.124    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00007681

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.124    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00007668

Length=916


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1178556994


Query= TCONS_00002306

Length=916


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1178556994


Query= TCONS_00002305

Length=916


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1178556994


Query= TCONS_00002307

Length=916


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1178556994


Query= TCONS_00002324

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.119    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00002325

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.148    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00002326

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.117    0.319    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00002327

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.120    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00002328

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.121    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00002329

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00002330

Length=731
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461677 pfam05557, MAD, Mitotic checkpoint protein. This famil...  186     8e-51


>CDD:461677 pfam05557, MAD, Mitotic checkpoint protein.  This family consists 
of several eukaryotic mitotic checkpoint (Mitotic arrest 
deficient or MAD) proteins. The mitotic spindle checkpoint 
monitors proper attachment of the bipolar spindle to the kinetochores 
of aligned sister chromatids and causes a cell cycle 
arrest in prometaphase when failures occur. Multiple components 
of the mitotic spindle checkpoint have been identified 
in yeast and higher eukaryotes. In S.cerevisiae, the existence 
of a Mad1-dependent complex containing Mad2, Mad3, Bub3 
and Cdc20 has been demonstrated.
Length=660

 Score = 186 bits (474),  Expect = 8e-51, Method: Composition-based stats.
 Identities = 162/709 (23%), Positives = 301/709 (42%), Gaps = 80/709 (11%)

Query  49   RVQVSTLRYELENIKQERDLMMLRHDKELRDLQLKADA-----------------DFRKA  91
            R ++   +  L  ++ E+  M L H +   +L+ KA A                   R  
Sbjct  1    RAELIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLL  60

Query  92   QAAESASHRANHKSETLAKELK---EVQDQALNDKVGLERKLRSLQDEKQNIQEELEETQ  148
            +  E+ +  A  +   L +  K   E  ++ LN+K       R +    +N   EL E +
Sbjct  61   EKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLKN---ELSELR  117

Query  149  AQLLDQERQHKHQINELETIRSSLQKTLEELQNDLQNARNSLQSTQEKLSQRDMDVANLE  208
             Q+   E + +   +ELE ++  L     +     +  R +L+  Q  L++ +  +  LE
Sbjct  118  RQIQRAELELQSTNSELEELQERLDLLKAKASE-AEQLRQNLEKQQSSLAEAEQRIKELE  176

Query  209  TENIRLKAEGADGETMSVLKRELSDQVAHIRNLETANREQTAELRHLRKVQKNVEVVEEQ  268
             E           E  S + +    ++A I  LE          +HL +  +N  +++E+
Sbjct  177  FEI-------QSQEQDSEIVKNSKSELARIPELEKELERLREHNKHLNENIENKLLLKEE  229

Query  269  KKSLENQLQLMKEVESELNTLRIQKQILDDERSSWTSLLQENDEPAEFDSPEAVVKALLQ  328
             + L+ +L+  ++   E  TL ++K+ L+ E  SW  L Q  D      SPE + + + Q
Sbjct  230  VEDLKRKLEREEKYREEAATLELEKEKLEQELQSWVKLAQ--DTGLNLRSPEDLSRRIEQ  287

Query  329  ERIEKATLVDKLGSIEAQFLEKDEIIKSLETERANLRQELEKLRAAGATTGGATAESRIR  388
             +  +  L ++  S+ +   + ++  + LE E A   +++E L               + 
Sbjct  288  LQQREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRH------KALV  341

Query  389  ARLERQRALAVKEVEYLRAQLETFDTEEVTLNAEQSQFDQRKSEQIANLEKLVDEY----  444
             RL+R+  L  KE +  RA LE++D E    N        +  E+I   E +  +     
Sbjct  342  RRLQRRVLLLTKERDGYRAILESYDKELTMSNY-----SPQLLERIEEAEDMTQKMQAHN  396

Query  445  ---RAEVQKAHEEL-AKREAPQQEDTQARGVKRPLSPAESDAENERLSVLTRKNRTLQDS  500
                A++  A EEL   ++  Q  + + + +++  S A+     E +  L RK  TL+  
Sbjct  397  EEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKLETLELE  456

Query  501  LSKSEQAAALLRKELEATKTQLKSLKAKSRTRILELRDNPTAEAEKLKFSTIATLRAEN-  559
              +  +    L  E+E  +  L+      +T++L L  NP AEA + + + +  L+AE  
Sbjct  457  RQRLREQKNEL--EMELERRCLQGDYDPKKTKVLHLSMNPAAEAYQQRKNQLEKLQAEIE  514

Query  560  --RDLLAQLQANHADVKVVPVSTLESMKLELNEMEKVVADKEKRMRRLKEIWTAKSSEFR  617
              + LL +L+ +   V  +P +T      E+ ++ K +   E + +RLKE++ AK  EFR
Sbjct  515  RLKRLLKKLEDDLEQVLRLPETTSTMNFKEVLDLRKELESAELKNQRLKEVFQAKIQEFR  574

Query  618  EAVASLLGYKLDFLPNGRVRVTSMFHLSPAYRHGDGSASSDSRGPGSMGNGEENSIIFDG  677
            +    L GY++D   N + R+TSM+       H D        G                
Sbjct  575  DVCYMLTGYQIDITTNSQYRLTSMYA-----EHPDDYLLFKLSGSNG-------------  616

Query  678  ENGTMKISGGPNSLFAMEIKHLIKFWVEERKDIPCFLAAMTLDFYDKTT  726
               TM++   P   F+  ++ LI   +  +K IP FL+A+TL+ + + T
Sbjct  617  --STMQLLETP---FSRTLEPLIDLHLAAQKSIPAFLSALTLELFSRQT  660



Lambda      K        H        a         alpha
   0.309    0.125    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 926931824


Query= TCONS_00007683

Length=329
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            59.4    1e-10


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 59.4 bits (145),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 38/183 (21%), Positives = 73/183 (40%), Gaps = 20/183 (11%)

Query  57   IYKSKREDGAV-VAVKVTIPHLLTPPHDAE--REVRLLREAASPHVISLLDSLKVDGGRL  113
              K + E+  + VAVK T+          +   E  ++++   P+++ LL  +   G  L
Sbjct  19   TLKGEGENTKIKVAVK-TLKEGADEEEREDFLEEASIMKKLDHPNIVKLL-GVCTQGEPL  76

Query  114  ILVFPYLKY-DLEHLLRR---DMLTATLIKAHLHDMFSALAHLHELGIIHRDVKPSNILL  169
             +V  Y+   DL   LR+    +    L+      +   + +L     +HRD+   N L+
Sbjct  77   YIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQIAKGMEYLESKNFVHRDLAARNCLV  135

Query  170  DSPDGPAYLADFGIAWKEGDKGSEPADKKITDVGTTS---YRAPEILFGFKGYGTALDLW  226
               +    ++DFG++     +     D      G      + APE L     + +  D+W
Sbjct  136  SE-NLVVKISDFGLS-----RDIYDDDYYRKRGGGKLPIKWMAPESLK-DGKFTSKSDVW  188

Query  227  AAG  229
            + G
Sbjct  189  SFG  191



Lambda      K        H        a         alpha
   0.318    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0680    0.140     1.90     42.6     43.6 

Effective search space used: 385413556


Query= TCONS_00007684

Length=394


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00002331

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            59.4    1e-10


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 59.4 bits (145),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 38/183 (21%), Positives = 73/183 (40%), Gaps = 20/183 (11%)

Query  57   IYKSKREDGAV-VAVKVTIPHLLTPPHDAE--REVRLLREAASPHVISLLDSLKVDGGRL  113
              K + E+  + VAVK T+          +   E  ++++   P+++ LL  +   G  L
Sbjct  19   TLKGEGENTKIKVAVK-TLKEGADEEEREDFLEEASIMKKLDHPNIVKLL-GVCTQGEPL  76

Query  114  ILVFPYLKY-DLEHLLRR---DMLTATLIKAHLHDMFSALAHLHELGIIHRDVKPSNILL  169
             +V  Y+   DL   LR+    +    L+      +   + +L     +HRD+   N L+
Sbjct  77   YIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQIAKGMEYLESKNFVHRDLAARNCLV  135

Query  170  DSPDGPAYLADFGIAWKEGDKGSEPADKKITDVGTTS---YRAPEILFGFKGYGTALDLW  226
               +    ++DFG++     +     D      G      + APE L     + +  D+W
Sbjct  136  SE-NLVVKISDFGLS-----RDIYDDDYYRKRGGGKLPIKWMAPESLK-DGKFTSKSDVW  188

Query  227  AAG  229
            + G
Sbjct  189  SFG  191



Lambda      K        H        a         alpha
   0.318    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00007685

Length=390


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00002332

Length=395


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00007686

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            59.4    7e-11


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 59.4 bits (145),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 38/183 (21%), Positives = 73/183 (40%), Gaps = 20/183 (11%)

Query  57   IYKSKREDGAV-VAVKVTIPHLLTPPHDAE--REVRLLREAASPHVISLLDSLKVDGGRL  113
              K + E+  + VAVK T+          +   E  ++++   P+++ LL  +   G  L
Sbjct  19   TLKGEGENTKIKVAVK-TLKEGADEEEREDFLEEASIMKKLDHPNIVKLL-GVCTQGEPL  76

Query  114  ILVFPYLKY-DLEHLLRR---DMLTATLIKAHLHDMFSALAHLHELGIIHRDVKPSNILL  169
             +V  Y+   DL   LR+    +    L+      +   + +L     +HRD+   N L+
Sbjct  77   YIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQIAKGMEYLESKNFVHRDLAARNCLV  135

Query  170  DSPDGPAYLADFGIAWKEGDKGSEPADKKITDVGTTS---YRAPEILFGFKGYGTALDLW  226
               +    ++DFG++     +     D      G      + APE L     + +  D+W
Sbjct  136  SE-NLVVKISDFGLS-----RDIYDDDYYRKRGGGKLPIKWMAPESLK-DGKFTSKSDVW  188

Query  227  AAG  229
            + G
Sbjct  189  SFG  191



Lambda      K        H        a         alpha
   0.319    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00007687

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00007688

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00002333

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367370 pfam03169, OPT, OPT oligopeptide transporter protein. ...  178     5e-50


>CDD:367370 pfam03169, OPT, OPT oligopeptide transporter protein.  The OPT 
family of oligopeptide transporters is distinct from the ABC 
pfam00005 and PTR pfam00854 transporter families. OPT transporters 
were first recognized in fungi (Candida albicans and 
Schizosaccharomyces pombe), but this alignment also includes 
orthologues from Arabidopsis thaliana. OPT transporters 
are thought to have 12-14 transmembrane domains and contain 
the following motif: SPYxEVRxxVxxxDDP.
Length=614

 Score = 178 bits (453),  Expect = 5e-50, Method: Composition-based stats.
 Identities = 114/480 (24%), Positives = 182/480 (38%), Gaps = 108/480 (23%)

Query  1    MGPSTCMHMLFGAILGWGILSPLA-KARGWAPGPV------GSWEDGSKAWIVWVSLAIM  53
            +     ++ML GA+L WGIL P+   +  W P  +          DG   +  ++    M
Sbjct  228  VPLWVAVNMLIGAVLSWGILIPILYYSNVWYPAYLPINSTRILDSDGLLDYKKYIGYGPM  287

Query  54   LADSLVSLGWLVLKPVIANAPRLKARFFSSRAGNWILAQASNNGSRHSYVRYSALSPISE  113
            L   L +L +                                     + + ++ L    +
Sbjct  288  LLSGLYALLYGTFFAAYT-----------------------------AIIVHTILFHGKD  318

Query  114  ESST--AAYSTHLPARHG-EPEEEDDAPPSQLISTRTVVILLPLTLMLNVVCMHIVFGDV  170
             ++   +   T    RH     +  + P          + LL L+ ++ +  +   F   
Sbjct  319  IAAALRSFPRTSYDDRHRRLMRKYKEVPMW------WYLALLVLSFVIGIAVVPAWF-TQ  371

Query  171  MSPLLSSLATLLAVLLSIMGVRALGETDLNPVSGISKLTQLLFSLATPASHFSRRTALIT  230
            +      LA LLA + +I      G T +NPVSG+  LT+L+F    P          + 
Sbjct  372  LPVWGLLLALLLAFVFAIPSAYIYGLTGINPVSGMGILTELIFGAWLPG-------RPVA  424

Query  231  NLLAGAVSESGALQAGDMMQDLKTGHLLGASPKAQFYGQMIGSLVGAVLSTAVYRMYVSV  290
            NL+ G V  + A QAGD MQDLKTGH L A P+AQF  Q+IG+LVG+V++  V    V  
Sbjct  425  NLIFGGVGYNAAAQAGDFMQDLKTGHYLKAPPRAQFVAQLIGTLVGSVVNPGVLIWLVKA  484

Query  291  YQVPGPMFQT-----PTAYVWIFTARLVTGQGLPPMAWQASLLAGTVFVAITIVRIYAAS  345
            Y       QT     P A V+   A +  G G   + W   + A   F+   +++++   
Sbjct  485  YGDGCTPDQTNAWTAPQAQVFAAAAVIGIG-GKRGLPWGFLIGAVAPFIVWLLLKVFPP-  542

Query  346  PLANGGRRNVSAPWRAWVPGGIAVAVGIFNVPSFTLARAIGGIIAWWWSRKHTNTTTSNI  405
                       +  R   P  +A A+G +  PS + A  IGG+I W+W R+         
Sbjct  543  ----------KSRARYL-PPPLAFAIGFYLPPSTSWAMCIGGLIFWFWLRR---------  582

Query  406  PGETVADLPPGASRVPAAVAGKTAEQAAREADAASSSVVVLASGLILGEGIISIVNLLLA  465
                                        R+         VLA+GLI GE ++ ++   L 
Sbjct  583  ----------------------------RDPSWWKKYNYVLAAGLIAGEALMGVIIAFLV  614



Lambda      K        H        a         alpha
   0.320    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00002334

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00002335

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00002336

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00002339

Length=26


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82037150


Query= TCONS_00002337

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00002338

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00002340

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429765 pfam07976, Phe_hydrox_dim, Phenol hydroxylase, C-termi...  210     2e-69


>CDD:429765 pfam07976, Phe_hydrox_dim, Phenol hydroxylase, C-terminal dimerization 
domain.  Phenol hydroxylase acts a homodimer, to hydroxylates 
phenol to catechol or similar product. The enzyme 
is comprised of three domains. The first two domains from 
the active site. The third domain, this domain, is involved 
in forming the dimerization interface. The domain adopts a thioredoxin-like 
fold.
Length=166

 Score = 210 bits (538),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 70/168 (42%), Positives = 97/168 (58%), Gaps = 3/168 (2%)

Query  84   FANGYACHYGPSSLVHKGG-ENIAANLIPGERFPPVKVRNQADGQAWWTTRLFKSDGRFR  142
            F +G    YGPS LV     +N+A+ L  G RFP  KV  QAD           SDGRFR
Sbjct  1    FTSGVGVDYGPSILVAGTSHQNLASGLPVGRRFPSAKVVRQADANPVHLQDELPSDGRFR  60

Query  143  IVLLAGDLRHKYQRQRVEAFSAHLASAESVLQRYRLEGEKLDSLIEVITIHSAPMREMDF  202
            I++ AGD+    Q+ R+EA + +L+S+ S L RY   G  +DS+ +V+ IHSAP  E++ 
Sbjct  61   ILVFAGDISDPAQKSRLEALADYLSSSSSFLSRYTPAGADIDSVFDVLLIHSAPRTEVEL  120

Query  203  PDFPEMLRLFDQERGWAYDKIWSDDDCFWDRQCTGKGYETWGVDRIRG  250
             D PE+LR FD + GW Y K++ DD+     +  G  YE +G+D  RG
Sbjct  121  EDLPEVLRPFDGKLGWDYWKVYVDDE--SYHEGGGDAYEKYGIDPKRG  166



Lambda      K        H        a         alpha
   0.321    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00002341

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429765 pfam07976, Phe_hydrox_dim, Phenol hydroxylase, C-termi...  210     2e-69


>CDD:429765 pfam07976, Phe_hydrox_dim, Phenol hydroxylase, C-terminal dimerization 
domain.  Phenol hydroxylase acts a homodimer, to hydroxylates 
phenol to catechol or similar product. The enzyme 
is comprised of three domains. The first two domains from 
the active site. The third domain, this domain, is involved 
in forming the dimerization interface. The domain adopts a thioredoxin-like 
fold.
Length=166

 Score = 210 bits (538),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 70/168 (42%), Positives = 97/168 (58%), Gaps = 3/168 (2%)

Query  84   FANGYACHYGPSSLVHKGG-ENIAANLIPGERFPPVKVRNQADGQAWWTTRLFKSDGRFR  142
            F +G    YGPS LV     +N+A+ L  G RFP  KV  QAD           SDGRFR
Sbjct  1    FTSGVGVDYGPSILVAGTSHQNLASGLPVGRRFPSAKVVRQADANPVHLQDELPSDGRFR  60

Query  143  IVLLAGDLRHKYQRQRVEAFSAHLASAESVLQRYRLEGEKLDSLIEVITIHSAPMREMDF  202
            I++ AGD+    Q+ R+EA + +L+S+ S L RY   G  +DS+ +V+ IHSAP  E++ 
Sbjct  61   ILVFAGDISDPAQKSRLEALADYLSSSSSFLSRYTPAGADIDSVFDVLLIHSAPRTEVEL  120

Query  203  PDFPEMLRLFDQERGWAYDKIWSDDDCFWDRQCTGKGYETWGVDRIRG  250
             D PE+LR FD + GW Y K++ DD+     +  G  YE +G+D  RG
Sbjct  121  EDLPEVLRPFDGKLGWDYWKVYVDDE--SYHEGGGDAYEKYGIDPKRG  166



Lambda      K        H        a         alpha
   0.321    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00007689

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429765 pfam07976, Phe_hydrox_dim, Phenol hydroxylase, C-termi...  210     2e-69


>CDD:429765 pfam07976, Phe_hydrox_dim, Phenol hydroxylase, C-terminal dimerization 
domain.  Phenol hydroxylase acts a homodimer, to hydroxylates 
phenol to catechol or similar product. The enzyme 
is comprised of three domains. The first two domains from 
the active site. The third domain, this domain, is involved 
in forming the dimerization interface. The domain adopts a thioredoxin-like 
fold.
Length=166

 Score = 210 bits (538),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 70/168 (42%), Positives = 97/168 (58%), Gaps = 3/168 (2%)

Query  84   FANGYACHYGPSSLVHKGG-ENIAANLIPGERFPPVKVRNQADGQAWWTTRLFKSDGRFR  142
            F +G    YGPS LV     +N+A+ L  G RFP  KV  QAD           SDGRFR
Sbjct  1    FTSGVGVDYGPSILVAGTSHQNLASGLPVGRRFPSAKVVRQADANPVHLQDELPSDGRFR  60

Query  143  IVLLAGDLRHKYQRQRVEAFSAHLASAESVLQRYRLEGEKLDSLIEVITIHSAPMREMDF  202
            I++ AGD+    Q+ R+EA + +L+S+ S L RY   G  +DS+ +V+ IHSAP  E++ 
Sbjct  61   ILVFAGDISDPAQKSRLEALADYLSSSSSFLSRYTPAGADIDSVFDVLLIHSAPRTEVEL  120

Query  203  PDFPEMLRLFDQERGWAYDKIWSDDDCFWDRQCTGKGYETWGVDRIRG  250
             D PE+LR FD + GW Y K++ DD+     +  G  YE +G+D  RG
Sbjct  121  EDLPEVLRPFDGKLGWDYWKVYVDDE--SYHEGGGDAYEKYGIDPKRG  166



Lambda      K        H        a         alpha
   0.321    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00002343

Length=260


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00002344

Length=921
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432413 pfam12234, Rav1p_C, RAVE protein 1 C terminal. This do...  604     0.0  


>CDD:432413 pfam12234, Rav1p_C, RAVE protein 1 C terminal.  This domain family 
is found in eukaryotes, and is typically between 621 and 
644 amino acids in length. This family is the C terminal 
region of the protein RAVE (regulator of the ATPase of vacuolar 
and endosomal membranes). Rav1p is involved in regulating 
the glucose dependent assembly and disassembly of vacuolar 
ATPase V1 and V0 subunits.
Length=637

 Score = 604 bits (1559),  Expect = 0.0, Method: Composition-based stats.
 Identities = 213/396 (54%), Positives = 276/396 (70%), Gaps = 7/396 (2%)

Query  519  IHTWTAKVDQQSSQVEFLLTSTVDTGIENPSLASGSSTKKAALVDADRTHLTIWDTNGAQ  578
            + TWTA+VD + S+VE+LLTS+++TGIENPSL SGSS  KAALVD+ R+ LTIWD     
Sbjct  1    VRTWTARVDLEDSKVEWLLTSSLETGIENPSLISGSSIGKAALVDSSRSTLTIWDLRRGV  60

Query  579  LEFEEHFAQHDVIRDLDWTSTPDKQSVLAIGFPHKVILLSQLRYDYLDARPSWTQIREIW  638
            LE+EE F   D IRDLDWTSTPD QS+LA+GFPH V+LL+QLRYDY +  PSW  IR+I 
Sbjct  61   LEYEETFESDDTIRDLDWTSTPDSQSILAVGFPHHVLLLTQLRYDYTNKGPSWAPIRKID  120

Query  639  IRDLTPHPIGDSCWLSNGHLGIGAGNQLFVYDNEID--ASDRLVSQLRIPSRGLSSVDLF  696
            IRDLTPHPIGDS WL +G L + AGNQLF+YD  +D    D   +   I SR + S DLF
Sbjct  121  IRDLTPHPIGDSIWLDDGTLVVAAGNQLFIYDKWLDLRLPDDPFTLRSIGSRKILSNDLF  180

Query  697  EVVSRLNGPLPVFHPQFLAQCILSGKTNVVHSVLTTLHRKLKFYTEG-DDIDGFLERPLE  755
             +VS LNGPLPV+HPQFL QC+L+GK  +V  +L  L ++LKFY+E  +D+D FL   LE
Sbjct  181  HLVSVLNGPLPVYHPQFLIQCLLAGKLELVKEILLRLFKELKFYSEDLEDLDSFLGIDLE  240

Query  756  DFYVEHDIPQQASSKHLQASYADLDLSETSNVMDENAAAALNENLSRFALPQLSSHEQFR  815
             F  + D     +     +S  D D  +     +E  A++LNE L++ +LPQL+ HEQ  
Sbjct  241  KFLKDDDKAYSKNKAFTSSS--DDDDPDPYETFNEEVASSLNEKLTKISLPQLTRHEQIT  298

Query  816  LADTIECVATVEKHRRSMDDNAARYLLFFRQHMLRRSQGVANKDTVSWREIVWAFHSGSQ  875
            L + IE V  VEKHRRS+D+N AR+LL F+ H+L + +   ++ ++SWR+I WA HS +Q
Sbjct  299  LINVIEAVGEVEKHRRSLDENGARFLLGFKLHLLHKKRT--SQSSLSWRDISWALHSDNQ  356

Query  876  DILSDLVSRQYGGKMQWASARESGIFMWLTDFNAIV  911
            +IL DLVSR YG K+ W +ARESGIFMWL D  A+ 
Sbjct  357  EILLDLVSRHYGNKLLWEAARESGIFMWLKDIEALR  392



Lambda      K        H        a         alpha
   0.320    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1185734564


Query= TCONS_00002345

Length=933
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459685 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L...  622     0.0  
CDD:400523 pfam08264, Anticodon_1, Anticodon-binding domain of tR...  109     2e-28
CDD:437134 pfam19302, DUF5915, Domain of unknown function (DUF591...  101     7e-25


>CDD:459685 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and 
V).  Other tRNA synthetase sub-families are too dissimilar 
to be included.
Length=602

 Score = 622 bits (1606),  Expect = 0.0, Method: Composition-based stats.
 Identities = 221/494 (45%), Positives = 299/494 (61%), Gaps = 27/494 (5%)

Query  1    MNSSFMESVWWVFKQLFDKGLVYRGYRVMPYSTALNTPLSNFEAQQNYKDVQDPAVVVSF  60
            M+     +VW VF +L DKGL+YRG +++ +S ALNT LSN E    YKDV+ P++ V+F
Sbjct  135  MDPELEAAVWEVFVRLHDKGLIYRGKKLVNWSPALNTALSNLEV--EYKDVKGPSIHVAF  192

Query  61   PLVDDPETCLLAWTTTPWTLPSNVALAVNPGFEYIKILDEASKKHYILLESLLRTLYKDP  120
            PL DD    L+ WTTTPWTLP N A+AVNP F+Y+      + + YIL E+LL++LYK  
Sbjct  193  PLADDEGASLVIWTTTPWTLPGNTAVAVNPEFDYVI-----TGEGYILAEALLKSLYK--  245

Query  121  KKAKFKIVDRFKGVDMKDWKYQPLFDYFYEEFKDHGFRVINGDYVSAEDGTGIVHQSPAF  180
            K    KI++ F+G +++  +    F        +    +I  DYV  E GTG VH +PA 
Sbjct  246  KGTDKKILEDFRGKELEGKEAIHPF-------VNREIPIITDDYVDMEFGTGAVHIAPAH  298

Query  181  GEEDYNVAMASGVISETRLPPNPVDEKGCFTAEVPDFVGQHVKAADKAIIKHLKGTGRLI  240
            GE DY V     +        NPVD+ G FT E PDF G +   A K I++ L   G L+
Sbjct  299  GENDYEVGQRHNL-----EVINPVDDDGTFTEEAPDFQGVYRFDARKKIVELLTEKGLLL  353

Query  241  VDSQITHSYPFCWRSDTPLIYRAVPSWFVKIGPIIPQMLQGIEESHWVPSFVKERRFASW  300
                 THSYPFCWRS TP+I RA P WFV++  +  Q L+ +E+  +VP    E+R+ +W
Sbjct  354  KIEPFTHSYPFCWRSGTPIIPRATPQWFVRMDELADQALEAVEKVQFVPKS-GEKRYFNW  412

Query  301  IQNARDWNISRNRFWGTPLPLWVSDDFKEVVAVGSVEEL-KQLSGHEGEITDLHRDKVDK  359
            + N +DW ISR R+WG P+P WVS D +EVV  G + EL       EG I  LHR+  DK
Sbjct  413  LANIQDWCISRQRWWGHPIPAWVSKDTEEVVCRGELFELVAGRFEEEGSIKWLHREAKDK  472

Query  360  ITIPSKQGKGVLRRVSEVFDCWFESGSMPYASQHYPFENKEQFEKSFPGDFIAEGLDQTR  419
            +      GKG L +  +V D WF SGS P+++  +PF N E+F+K FP D + EG DQTR
Sbjct  473  L----GYGKGTLEQDEDVLDTWFSSGSWPFSTLGWPFVNTEEFKKFFPADMLLEGSDQTR  528

Query  420  GWFYTLTVLGTHLFGTLPFKNCVVNGIVLAEDGKKMSKRLKNYPDPTLIMQRYGSDALRL  479
            GWFY + +L T L G++PFKN +V+G+V  E G+KMSK L N  DP  ++ +YG+DALRL
Sbjct  529  GWFYRMIMLSTALTGSVPFKNVLVHGLVRDEQGRKMSKSLGNVIDPLDVIDKYGADALRL  588

Query  480  YLINSPVVRAEPLR  493
            +L NS   R   L 
Sbjct  589  WLANSDYGRDINLS  602


>CDD:400523 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA.  This 
domain is found mainly hydrophobic tRNA synthetases. The 
domain binds to the anticodon of the tRNA.
Length=141

 Score = 109 bits (274),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 19/159 (12%)

Query  547  DRWILASCQSLLKFVNEEMAGYRLYTVVPRLLELIDNT-TNWYIRFNRKRLKGENGIDDT  605
            DRWIL+    L+K V E    YR  T    L E   N  ++WY+   + RL GE      
Sbjct  1    DRWILSRLNKLIKEVTEAYENYRFNTAAQALYEFFWNDLSDWYLELIKDRLYGEEPDS--  58

Query  606  LHALNTLFEVLYTLVRGLAPFTPFITDTIYQKLLPHIPQALRGEDSRSVHFLSFPEVREE  665
              A  TL+EVL TL+R LAPF PFIT+ ++QK               S+H   +PE   E
Sbjct  59   -RAQTTLYEVLETLLRLLAPFMPFITEELWQKE--------------SIHLAPWPE-DAE  102

Query  666  LFDEVVERRVARMQKVIEMARVSRERRSIGLKSPLKTLV  704
            L +  +E      Q++++  R  R    I    PL+ ++
Sbjct  103  LEEAELEEAFELRQEIVQAIRKLRSELKIKKSLPLEVVI  141


>CDD:437134 pfam19302, DUF5915, Domain of unknown function (DUF5915).  This 
presumed domain is found at the C-terminus of isoleucyl tRNA 
ligase enzymes.
Length=195

 Score = 101 bits (253),  Expect = 7e-25, Method: Composition-based stats.
 Identities = 56/152 (37%), Positives = 87/152 (57%), Gaps = 18/152 (12%)

Query  723  ILEELNILELVLSSDEAKYNVQYSVSADWPTLGKKLKKDAQKVKKALPSLTSDDVKKFVA  782
            I EELN+ E+   +DE++  V+YS   ++P LGK+L K  +   K + SL   +++K + 
Sbjct  4    IKEELNVKEVEFGADESEL-VEYSAKPNFPVLGKELGKLMKAAAKEIASLNQMEIQK-IL  61

Query  783  EKKML---VDG--IELVEGDLVVKRGLKED--VASEGMEPNADADVLTI-LDANLYPELA  834
            +   L   VDG  IEL   DL+V R  KE   VA+EG         LT+ LD  +  EL 
Sbjct  62   DGGTLTIDVDGEEIELTSEDLLVTRQGKEGLAVANEGT--------LTVALDTTITEELR  113

Query  835  QQGLGREIINRLQRLRKKAGLVPTDDVRMEYA  866
            ++GL REI++++Q LRK++G   TD + +  +
Sbjct  114  EEGLVREIVSKIQNLRKESGFEVTDRINLYVS  145



Lambda      K        H        a         alpha
   0.319    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1202960732


Query= TCONS_00002346

Length=933
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459685 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L...  622     0.0  
CDD:400523 pfam08264, Anticodon_1, Anticodon-binding domain of tR...  109     2e-28
CDD:437134 pfam19302, DUF5915, Domain of unknown function (DUF591...  101     7e-25


>CDD:459685 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and 
V).  Other tRNA synthetase sub-families are too dissimilar 
to be included.
Length=602

 Score = 622 bits (1606),  Expect = 0.0, Method: Composition-based stats.
 Identities = 221/494 (45%), Positives = 299/494 (61%), Gaps = 27/494 (5%)

Query  1    MNSSFMESVWWVFKQLFDKGLVYRGYRVMPYSTALNTPLSNFEAQQNYKDVQDPAVVVSF  60
            M+     +VW VF +L DKGL+YRG +++ +S ALNT LSN E    YKDV+ P++ V+F
Sbjct  135  MDPELEAAVWEVFVRLHDKGLIYRGKKLVNWSPALNTALSNLEV--EYKDVKGPSIHVAF  192

Query  61   PLVDDPETCLLAWTTTPWTLPSNVALAVNPGFEYIKILDEASKKHYILLESLLRTLYKDP  120
            PL DD    L+ WTTTPWTLP N A+AVNP F+Y+      + + YIL E+LL++LYK  
Sbjct  193  PLADDEGASLVIWTTTPWTLPGNTAVAVNPEFDYVI-----TGEGYILAEALLKSLYK--  245

Query  121  KKAKFKIVDRFKGVDMKDWKYQPLFDYFYEEFKDHGFRVINGDYVSAEDGTGIVHQSPAF  180
            K    KI++ F+G +++  +    F        +    +I  DYV  E GTG VH +PA 
Sbjct  246  KGTDKKILEDFRGKELEGKEAIHPF-------VNREIPIITDDYVDMEFGTGAVHIAPAH  298

Query  181  GEEDYNVAMASGVISETRLPPNPVDEKGCFTAEVPDFVGQHVKAADKAIIKHLKGTGRLI  240
            GE DY V     +        NPVD+ G FT E PDF G +   A K I++ L   G L+
Sbjct  299  GENDYEVGQRHNL-----EVINPVDDDGTFTEEAPDFQGVYRFDARKKIVELLTEKGLLL  353

Query  241  VDSQITHSYPFCWRSDTPLIYRAVPSWFVKIGPIIPQMLQGIEESHWVPSFVKERRFASW  300
                 THSYPFCWRS TP+I RA P WFV++  +  Q L+ +E+  +VP    E+R+ +W
Sbjct  354  KIEPFTHSYPFCWRSGTPIIPRATPQWFVRMDELADQALEAVEKVQFVPKS-GEKRYFNW  412

Query  301  IQNARDWNISRNRFWGTPLPLWVSDDFKEVVAVGSVEEL-KQLSGHEGEITDLHRDKVDK  359
            + N +DW ISR R+WG P+P WVS D +EVV  G + EL       EG I  LHR+  DK
Sbjct  413  LANIQDWCISRQRWWGHPIPAWVSKDTEEVVCRGELFELVAGRFEEEGSIKWLHREAKDK  472

Query  360  ITIPSKQGKGVLRRVSEVFDCWFESGSMPYASQHYPFENKEQFEKSFPGDFIAEGLDQTR  419
            +      GKG L +  +V D WF SGS P+++  +PF N E+F+K FP D + EG DQTR
Sbjct  473  L----GYGKGTLEQDEDVLDTWFSSGSWPFSTLGWPFVNTEEFKKFFPADMLLEGSDQTR  528

Query  420  GWFYTLTVLGTHLFGTLPFKNCVVNGIVLAEDGKKMSKRLKNYPDPTLIMQRYGSDALRL  479
            GWFY + +L T L G++PFKN +V+G+V  E G+KMSK L N  DP  ++ +YG+DALRL
Sbjct  529  GWFYRMIMLSTALTGSVPFKNVLVHGLVRDEQGRKMSKSLGNVIDPLDVIDKYGADALRL  588

Query  480  YLINSPVVRAEPLR  493
            +L NS   R   L 
Sbjct  589  WLANSDYGRDINLS  602


>CDD:400523 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA.  This 
domain is found mainly hydrophobic tRNA synthetases. The 
domain binds to the anticodon of the tRNA.
Length=141

 Score = 109 bits (274),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 19/159 (12%)

Query  547  DRWILASCQSLLKFVNEEMAGYRLYTVVPRLLELIDNT-TNWYIRFNRKRLKGENGIDDT  605
            DRWIL+    L+K V E    YR  T    L E   N  ++WY+   + RL GE      
Sbjct  1    DRWILSRLNKLIKEVTEAYENYRFNTAAQALYEFFWNDLSDWYLELIKDRLYGEEPDS--  58

Query  606  LHALNTLFEVLYTLVRGLAPFTPFITDTIYQKLLPHIPQALRGEDSRSVHFLSFPEVREE  665
              A  TL+EVL TL+R LAPF PFIT+ ++QK               S+H   +PE   E
Sbjct  59   -RAQTTLYEVLETLLRLLAPFMPFITEELWQKE--------------SIHLAPWPE-DAE  102

Query  666  LFDEVVERRVARMQKVIEMARVSRERRSIGLKSPLKTLV  704
            L +  +E      Q++++  R  R    I    PL+ ++
Sbjct  103  LEEAELEEAFELRQEIVQAIRKLRSELKIKKSLPLEVVI  141


>CDD:437134 pfam19302, DUF5915, Domain of unknown function (DUF5915).  This 
presumed domain is found at the C-terminus of isoleucyl tRNA 
ligase enzymes.
Length=195

 Score = 101 bits (253),  Expect = 7e-25, Method: Composition-based stats.
 Identities = 56/152 (37%), Positives = 87/152 (57%), Gaps = 18/152 (12%)

Query  723  ILEELNILELVLSSDEAKYNVQYSVSADWPTLGKKLKKDAQKVKKALPSLTSDDVKKFVA  782
            I EELN+ E+   +DE++  V+YS   ++P LGK+L K  +   K + SL   +++K + 
Sbjct  4    IKEELNVKEVEFGADESEL-VEYSAKPNFPVLGKELGKLMKAAAKEIASLNQMEIQK-IL  61

Query  783  EKKML---VDG--IELVEGDLVVKRGLKED--VASEGMEPNADADVLTI-LDANLYPELA  834
            +   L   VDG  IEL   DL+V R  KE   VA+EG         LT+ LD  +  EL 
Sbjct  62   DGGTLTIDVDGEEIELTSEDLLVTRQGKEGLAVANEGT--------LTVALDTTITEELR  113

Query  835  QQGLGREIINRLQRLRKKAGLVPTDDVRMEYA  866
            ++GL REI++++Q LRK++G   TD + +  +
Sbjct  114  EEGLVREIVSKIQNLRKESGFEVTDRINLYVS  145



Lambda      K        H        a         alpha
   0.319    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1202960732


Query= TCONS_00002347

Length=933
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459685 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L...  622     0.0  
CDD:400523 pfam08264, Anticodon_1, Anticodon-binding domain of tR...  109     2e-28
CDD:437134 pfam19302, DUF5915, Domain of unknown function (DUF591...  101     7e-25


>CDD:459685 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and 
V).  Other tRNA synthetase sub-families are too dissimilar 
to be included.
Length=602

 Score = 622 bits (1606),  Expect = 0.0, Method: Composition-based stats.
 Identities = 221/494 (45%), Positives = 299/494 (61%), Gaps = 27/494 (5%)

Query  1    MNSSFMESVWWVFKQLFDKGLVYRGYRVMPYSTALNTPLSNFEAQQNYKDVQDPAVVVSF  60
            M+     +VW VF +L DKGL+YRG +++ +S ALNT LSN E    YKDV+ P++ V+F
Sbjct  135  MDPELEAAVWEVFVRLHDKGLIYRGKKLVNWSPALNTALSNLEV--EYKDVKGPSIHVAF  192

Query  61   PLVDDPETCLLAWTTTPWTLPSNVALAVNPGFEYIKILDEASKKHYILLESLLRTLYKDP  120
            PL DD    L+ WTTTPWTLP N A+AVNP F+Y+      + + YIL E+LL++LYK  
Sbjct  193  PLADDEGASLVIWTTTPWTLPGNTAVAVNPEFDYVI-----TGEGYILAEALLKSLYK--  245

Query  121  KKAKFKIVDRFKGVDMKDWKYQPLFDYFYEEFKDHGFRVINGDYVSAEDGTGIVHQSPAF  180
            K    KI++ F+G +++  +    F        +    +I  DYV  E GTG VH +PA 
Sbjct  246  KGTDKKILEDFRGKELEGKEAIHPF-------VNREIPIITDDYVDMEFGTGAVHIAPAH  298

Query  181  GEEDYNVAMASGVISETRLPPNPVDEKGCFTAEVPDFVGQHVKAADKAIIKHLKGTGRLI  240
            GE DY V     +        NPVD+ G FT E PDF G +   A K I++ L   G L+
Sbjct  299  GENDYEVGQRHNL-----EVINPVDDDGTFTEEAPDFQGVYRFDARKKIVELLTEKGLLL  353

Query  241  VDSQITHSYPFCWRSDTPLIYRAVPSWFVKIGPIIPQMLQGIEESHWVPSFVKERRFASW  300
                 THSYPFCWRS TP+I RA P WFV++  +  Q L+ +E+  +VP    E+R+ +W
Sbjct  354  KIEPFTHSYPFCWRSGTPIIPRATPQWFVRMDELADQALEAVEKVQFVPKS-GEKRYFNW  412

Query  301  IQNARDWNISRNRFWGTPLPLWVSDDFKEVVAVGSVEEL-KQLSGHEGEITDLHRDKVDK  359
            + N +DW ISR R+WG P+P WVS D +EVV  G + EL       EG I  LHR+  DK
Sbjct  413  LANIQDWCISRQRWWGHPIPAWVSKDTEEVVCRGELFELVAGRFEEEGSIKWLHREAKDK  472

Query  360  ITIPSKQGKGVLRRVSEVFDCWFESGSMPYASQHYPFENKEQFEKSFPGDFIAEGLDQTR  419
            +      GKG L +  +V D WF SGS P+++  +PF N E+F+K FP D + EG DQTR
Sbjct  473  L----GYGKGTLEQDEDVLDTWFSSGSWPFSTLGWPFVNTEEFKKFFPADMLLEGSDQTR  528

Query  420  GWFYTLTVLGTHLFGTLPFKNCVVNGIVLAEDGKKMSKRLKNYPDPTLIMQRYGSDALRL  479
            GWFY + +L T L G++PFKN +V+G+V  E G+KMSK L N  DP  ++ +YG+DALRL
Sbjct  529  GWFYRMIMLSTALTGSVPFKNVLVHGLVRDEQGRKMSKSLGNVIDPLDVIDKYGADALRL  588

Query  480  YLINSPVVRAEPLR  493
            +L NS   R   L 
Sbjct  589  WLANSDYGRDINLS  602


>CDD:400523 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA.  This 
domain is found mainly hydrophobic tRNA synthetases. The 
domain binds to the anticodon of the tRNA.
Length=141

 Score = 109 bits (274),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 19/159 (12%)

Query  547  DRWILASCQSLLKFVNEEMAGYRLYTVVPRLLELIDNT-TNWYIRFNRKRLKGENGIDDT  605
            DRWIL+    L+K V E    YR  T    L E   N  ++WY+   + RL GE      
Sbjct  1    DRWILSRLNKLIKEVTEAYENYRFNTAAQALYEFFWNDLSDWYLELIKDRLYGEEPDS--  58

Query  606  LHALNTLFEVLYTLVRGLAPFTPFITDTIYQKLLPHIPQALRGEDSRSVHFLSFPEVREE  665
              A  TL+EVL TL+R LAPF PFIT+ ++QK               S+H   +PE   E
Sbjct  59   -RAQTTLYEVLETLLRLLAPFMPFITEELWQKE--------------SIHLAPWPE-DAE  102

Query  666  LFDEVVERRVARMQKVIEMARVSRERRSIGLKSPLKTLV  704
            L +  +E      Q++++  R  R    I    PL+ ++
Sbjct  103  LEEAELEEAFELRQEIVQAIRKLRSELKIKKSLPLEVVI  141


>CDD:437134 pfam19302, DUF5915, Domain of unknown function (DUF5915).  This 
presumed domain is found at the C-terminus of isoleucyl tRNA 
ligase enzymes.
Length=195

 Score = 101 bits (253),  Expect = 7e-25, Method: Composition-based stats.
 Identities = 56/152 (37%), Positives = 87/152 (57%), Gaps = 18/152 (12%)

Query  723  ILEELNILELVLSSDEAKYNVQYSVSADWPTLGKKLKKDAQKVKKALPSLTSDDVKKFVA  782
            I EELN+ E+   +DE++  V+YS   ++P LGK+L K  +   K + SL   +++K + 
Sbjct  4    IKEELNVKEVEFGADESEL-VEYSAKPNFPVLGKELGKLMKAAAKEIASLNQMEIQK-IL  61

Query  783  EKKML---VDG--IELVEGDLVVKRGLKED--VASEGMEPNADADVLTI-LDANLYPELA  834
            +   L   VDG  IEL   DL+V R  KE   VA+EG         LT+ LD  +  EL 
Sbjct  62   DGGTLTIDVDGEEIELTSEDLLVTRQGKEGLAVANEGT--------LTVALDTTITEELR  113

Query  835  QQGLGREIINRLQRLRKKAGLVPTDDVRMEYA  866
            ++GL REI++++Q LRK++G   TD + +  +
Sbjct  114  EEGLVREIVSKIQNLRKESGFEVTDRINLYVS  145



Lambda      K        H        a         alpha
   0.319    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1202960732


Query= TCONS_00007690

Length=933
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459685 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L...  622     0.0  
CDD:400523 pfam08264, Anticodon_1, Anticodon-binding domain of tR...  109     2e-28
CDD:437134 pfam19302, DUF5915, Domain of unknown function (DUF591...  101     7e-25


>CDD:459685 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and 
V).  Other tRNA synthetase sub-families are too dissimilar 
to be included.
Length=602

 Score = 622 bits (1606),  Expect = 0.0, Method: Composition-based stats.
 Identities = 221/494 (45%), Positives = 299/494 (61%), Gaps = 27/494 (5%)

Query  1    MNSSFMESVWWVFKQLFDKGLVYRGYRVMPYSTALNTPLSNFEAQQNYKDVQDPAVVVSF  60
            M+     +VW VF +L DKGL+YRG +++ +S ALNT LSN E    YKDV+ P++ V+F
Sbjct  135  MDPELEAAVWEVFVRLHDKGLIYRGKKLVNWSPALNTALSNLEV--EYKDVKGPSIHVAF  192

Query  61   PLVDDPETCLLAWTTTPWTLPSNVALAVNPGFEYIKILDEASKKHYILLESLLRTLYKDP  120
            PL DD    L+ WTTTPWTLP N A+AVNP F+Y+      + + YIL E+LL++LYK  
Sbjct  193  PLADDEGASLVIWTTTPWTLPGNTAVAVNPEFDYVI-----TGEGYILAEALLKSLYK--  245

Query  121  KKAKFKIVDRFKGVDMKDWKYQPLFDYFYEEFKDHGFRVINGDYVSAEDGTGIVHQSPAF  180
            K    KI++ F+G +++  +    F        +    +I  DYV  E GTG VH +PA 
Sbjct  246  KGTDKKILEDFRGKELEGKEAIHPF-------VNREIPIITDDYVDMEFGTGAVHIAPAH  298

Query  181  GEEDYNVAMASGVISETRLPPNPVDEKGCFTAEVPDFVGQHVKAADKAIIKHLKGTGRLI  240
            GE DY V     +        NPVD+ G FT E PDF G +   A K I++ L   G L+
Sbjct  299  GENDYEVGQRHNL-----EVINPVDDDGTFTEEAPDFQGVYRFDARKKIVELLTEKGLLL  353

Query  241  VDSQITHSYPFCWRSDTPLIYRAVPSWFVKIGPIIPQMLQGIEESHWVPSFVKERRFASW  300
                 THSYPFCWRS TP+I RA P WFV++  +  Q L+ +E+  +VP    E+R+ +W
Sbjct  354  KIEPFTHSYPFCWRSGTPIIPRATPQWFVRMDELADQALEAVEKVQFVPKS-GEKRYFNW  412

Query  301  IQNARDWNISRNRFWGTPLPLWVSDDFKEVVAVGSVEEL-KQLSGHEGEITDLHRDKVDK  359
            + N +DW ISR R+WG P+P WVS D +EVV  G + EL       EG I  LHR+  DK
Sbjct  413  LANIQDWCISRQRWWGHPIPAWVSKDTEEVVCRGELFELVAGRFEEEGSIKWLHREAKDK  472

Query  360  ITIPSKQGKGVLRRVSEVFDCWFESGSMPYASQHYPFENKEQFEKSFPGDFIAEGLDQTR  419
            +      GKG L +  +V D WF SGS P+++  +PF N E+F+K FP D + EG DQTR
Sbjct  473  L----GYGKGTLEQDEDVLDTWFSSGSWPFSTLGWPFVNTEEFKKFFPADMLLEGSDQTR  528

Query  420  GWFYTLTVLGTHLFGTLPFKNCVVNGIVLAEDGKKMSKRLKNYPDPTLIMQRYGSDALRL  479
            GWFY + +L T L G++PFKN +V+G+V  E G+KMSK L N  DP  ++ +YG+DALRL
Sbjct  529  GWFYRMIMLSTALTGSVPFKNVLVHGLVRDEQGRKMSKSLGNVIDPLDVIDKYGADALRL  588

Query  480  YLINSPVVRAEPLR  493
            +L NS   R   L 
Sbjct  589  WLANSDYGRDINLS  602


>CDD:400523 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA.  This 
domain is found mainly hydrophobic tRNA synthetases. The 
domain binds to the anticodon of the tRNA.
Length=141

 Score = 109 bits (274),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 19/159 (12%)

Query  547  DRWILASCQSLLKFVNEEMAGYRLYTVVPRLLELIDNT-TNWYIRFNRKRLKGENGIDDT  605
            DRWIL+    L+K V E    YR  T    L E   N  ++WY+   + RL GE      
Sbjct  1    DRWILSRLNKLIKEVTEAYENYRFNTAAQALYEFFWNDLSDWYLELIKDRLYGEEPDS--  58

Query  606  LHALNTLFEVLYTLVRGLAPFTPFITDTIYQKLLPHIPQALRGEDSRSVHFLSFPEVREE  665
              A  TL+EVL TL+R LAPF PFIT+ ++QK               S+H   +PE   E
Sbjct  59   -RAQTTLYEVLETLLRLLAPFMPFITEELWQKE--------------SIHLAPWPE-DAE  102

Query  666  LFDEVVERRVARMQKVIEMARVSRERRSIGLKSPLKTLV  704
            L +  +E      Q++++  R  R    I    PL+ ++
Sbjct  103  LEEAELEEAFELRQEIVQAIRKLRSELKIKKSLPLEVVI  141


>CDD:437134 pfam19302, DUF5915, Domain of unknown function (DUF5915).  This 
presumed domain is found at the C-terminus of isoleucyl tRNA 
ligase enzymes.
Length=195

 Score = 101 bits (253),  Expect = 7e-25, Method: Composition-based stats.
 Identities = 56/152 (37%), Positives = 87/152 (57%), Gaps = 18/152 (12%)

Query  723  ILEELNILELVLSSDEAKYNVQYSVSADWPTLGKKLKKDAQKVKKALPSLTSDDVKKFVA  782
            I EELN+ E+   +DE++  V+YS   ++P LGK+L K  +   K + SL   +++K + 
Sbjct  4    IKEELNVKEVEFGADESEL-VEYSAKPNFPVLGKELGKLMKAAAKEIASLNQMEIQK-IL  61

Query  783  EKKML---VDG--IELVEGDLVVKRGLKED--VASEGMEPNADADVLTI-LDANLYPELA  834
            +   L   VDG  IEL   DL+V R  KE   VA+EG         LT+ LD  +  EL 
Sbjct  62   DGGTLTIDVDGEEIELTSEDLLVTRQGKEGLAVANEGT--------LTVALDTTITEELR  113

Query  835  QQGLGREIINRLQRLRKKAGLVPTDDVRMEYA  866
            ++GL REI++++Q LRK++G   TD + +  +
Sbjct  114  EEGLVREIVSKIQNLRKESGFEVTDRINLYVS  145



Lambda      K        H        a         alpha
   0.319    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1202960732


Query= TCONS_00007691

Length=960
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:375377 pfam17846, XRN_M, Xrn1 helical domain. This helical do...  505     9e-172
CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus. Th...  313     5e-101


>CDD:375377 pfam17846, XRN_M, Xrn1 helical domain.  This helical domain is 
part of the Xrn1 catalytic core. Xrn1 is a cytoplasmic 5'-3' 
exonuclease that degrades decapped mRNAs.
Length=442

 Score = 505 bits (1303),  Expect = 9e-172, Method: Composition-based stats.
 Identities = 205/548 (37%), Positives = 288/548 (53%), Gaps = 109/548 (20%)

Query  232  PFDLERALDDWVFMCFFVGNDFLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTEDGHV  291
             FD ER +DD+VFMCFFVGNDFLPHLPSL+IRE  ID L+ +++      GGYLT++G+V
Sbjct  1    QFDFERIIDDFVFMCFFVGNDFLPHLPSLEIREGAIDLLMTVYKKEFYKTGGYLTDNGYV  60

Query  292  DLKRAQLILQGLAKQEDAIFRRRRQAEERKLANEKRRKQEAKAREEERARKRRRSSPTYE  351
            +L R +L +  +   E+ IFR+R++ E+RK     RR++                     
Sbjct  61   NLDRVELFVSLVGTYEEKIFRKRQRREDRKRRRLARREE---------------------  99

Query  352  PMDSPVGHRAPRGGGDAAPPNQLELITPSRGELSRQTRELTHSMVVNRGAVYRANMANKS  411
                                                                + +  N  
Sbjct  100  --------------------------------------------------ASKEDDTNLE  109

Query  412  AAAVLKSKLMQGSQNGQNGEEKSEGATTNNDEPSQDQPDQTEQTSPSVLGKRKADLVEEE  471
            AA            N  N    S  A + N  PS +     E        K  ++L E+ 
Sbjct  110  AA------------NATNPSVGSHKAGSANATPSNESEASAE-------AKATSELREKN  150

Query  472  DTDAGTPGRDSPAVPVAAKEDELPPDTVRLWEEGYADRYYEQKFGV-DPQDKEFRHK-VA  529
              +      DS       + D    D VRL E G+ +RYY++KF V   +D EFR + V 
Sbjct  151  GKEL----DDS-------ESDGDGVDKVRLGEPGWKERYYKEKFSVKSTEDIEFRREDVV  199

Query  530  RAYAEGLAWVLLYYFQGCPSWTWYYPYHYAPFAADFVDIGDMEITFDKGVPFKPFEQLMG  589
            + Y EGL WVL YY+QGC SWTW+YPYHYAPFA+D  ++  ++I F+KG PFKPFEQLMG
Sbjct  200  QKYVEGLCWVLRYYYQGCCSWTWFYPYHYAPFASDLKNLAQLKIKFEKGQPFKPFEQLMG  259

Query  590  VLPASSNHAIPKVFHDLMSSPDSEIIDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLA  649
            V PA+S HA+PK +  LM+ PDS IIDFYPEDF +DLNGK++AWQGV LLPFIDEKRLL 
Sbjct  260  VFPAASKHALPKPYQALMTDPDSPIIDFYPEDFEIDLNGKRYAWQGVALLPFIDEKRLLE  319

Query  650  AMEKKYPLLTEDEKLRNSVGREVLLISEAHPLYQDLVANFYSKKQGVQKYKLNM-RISDG  708
            A+ K    LTE+E  RN+ G ++L +S+ HPL +  + + Y ++  V   K  +  +SDG
Sbjct  320  ALRKLENELTEEEVKRNTRGLDMLFVSKTHPLAESFIQSIYEQEDFV---KRAIDPLSDG  376

Query  709  LAGKVERNEAYIPHSSLPSSLEEYGMPSLEDDRSLTVNYEIPKSNHVHKSMLLRGVKFNP  768
            + G +  +E  +  + + S L+  G+  + D+  L V YE+P+ ++ H ++LL GV    
Sbjct  377  MGGSIALHEETVVGNIVSSPLK--GLNDIRDNSVLCVFYELPQYDYSHIAVLLPGVIDPE  434

Query  769  PALDNADI  776
              L   D+
Sbjct  435  KVLTPEDL  442


>CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus.  This family 
aligns residues towards the N-terminus of several proteins 
with multiple functions. The members of this family all appear 
to possess 5'-3' exonuclease activity EC:3.1.11.-. Thus, 
the aligned region may be necessary for 5' to 3' exonuclease 
function. The family also contains several Xrn1 and Xrn2 
proteins. The 5'-3' exoribonucleases Xrn1p and Xrn2p/Rat1p 
function in the degradation and processing of several classes 
of RNA in Saccharomyces cerevisiae. Xrn1p is the main enzyme 
catalyzing cytoplasmic mRNA degradation in multiple decay 
pathways, whereas Xrn2p/Rat1p functions in the processing of 
rRNAs and small nucleolar RNAs (snoRNAs) in the nucleus.
Length=231

 Score = 313 bits (805),  Expect = 5e-101, Method: Composition-based stats.
 Identities = 106/157 (68%), Positives = 128/157 (82%), Gaps = 7/157 (4%)

Query  1    MIAVDGVAPRAKMNQQRARRFRSAQEAKEADEKKEEFRKMLAKQNGNKVDEELQEEVVKK  60
             +AVDGVAPRAKMNQQR+RRFRSA+EA+E +EK EE R+ L K+ G +  EE       +
Sbjct  82   YMAVDGVAPRAKMNQQRSRRFRSAKEAEELEEKAEELREELEKEGGEEPPEE-------E  134

Query  61   TWDSNVITPGTPFMDILAASLRYWIAYKLNTDPAWEKLKIIISDATVPGEGEHKIMEFIR  120
            T+DSN ITPGT FM+ L+ +LRY+I  KLNTDPAW+ LK+I+SDA VPGEGEHKIM+FIR
Sbjct  135  TFDSNCITPGTEFMEKLSEALRYYIKKKLNTDPAWKNLKVILSDANVPGEGEHKIMDFIR  194

Query  121  SQRAAPEHDPNTRHVIYGLDADLIMLGLATHEPHFRV  157
             QR+ P++DPNTRH IYGLDADLIMLGLATHEPHF +
Sbjct  195  KQRSQPDYDPNTRHCIYGLDADLIMLGLATHEPHFSI  231



Lambda      K        H        a         alpha
   0.315    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1223316864


Query= TCONS_00007692

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:375377 pfam17846, XRN_M, Xrn1 helical domain. This helical do...  470     1e-162


>CDD:375377 pfam17846, XRN_M, Xrn1 helical domain.  This helical domain is 
part of the Xrn1 catalytic core. Xrn1 is a cytoplasmic 5'-3' 
exonuclease that degrades decapped mRNAs.
Length=442

 Score = 470 bits (1211),  Expect = 1e-162, Method: Composition-based stats.
 Identities = 193/512 (38%), Positives = 270/512 (53%), Gaps = 109/512 (21%)

Query  88   PFDLERALDDWVFMCFFVGNDFLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTEDGHV  147
             FD ER +DD+VFMCFFVGNDFLPHLPSL+IRE  ID L+ +++      GGYLT++G+V
Sbjct  1    QFDFERIIDDFVFMCFFVGNDFLPHLPSLEIREGAIDLLMTVYKKEFYKTGGYLTDNGYV  60

Query  148  DLKRAQLILQGLAKQEDAIFRRRRQAEERKLANEKRRKQEAKAREEERARKRRRSSPTYE  207
            +L R +L +  +   E+ IFR+R++ E+RK     RR++ +                   
Sbjct  61   NLDRVELFVSLVGTYEEKIFRKRQRREDRKRRRLARREEAS-------------------  101

Query  208  PMDSPVGHRAPRGGGDAAPPNQLELITPSRGELSRQTRELTHSMVVNRGAVYRANMANKS  267
                                                                + +  N  
Sbjct  102  ----------------------------------------------------KEDDTNLE  109

Query  268  AAAVLKSKLMQGSQNGQNGEEKSEGATTNNDEPSQDQPDQTEQTSPSVLGKRKADLVEEE  327
            AA            N  N    S  A + N  PS +     E        K  ++L E+ 
Sbjct  110  AA------------NATNPSVGSHKAGSANATPSNESEASAE-------AKATSELREKN  150

Query  328  DTDAGTPGRDSPAVPVAAKEDELPPDTVRLWEEGYADRYYEQKFGV-DPQDKEFRHK-VA  385
              +      DS       + D    D VRL E G+ +RYY++KF V   +D EFR + V 
Sbjct  151  GKEL----DDS-------ESDGDGVDKVRLGEPGWKERYYKEKFSVKSTEDIEFRREDVV  199

Query  386  RAYAEGLAWVLLYYFQGCPSWTWYYPYHYAPFAADFVDIGDMEITFDKGVPFKPFEQLMG  445
            + Y EGL WVL YY+QGC SWTW+YPYHYAPFA+D  ++  ++I F+KG PFKPFEQLMG
Sbjct  200  QKYVEGLCWVLRYYYQGCCSWTWFYPYHYAPFASDLKNLAQLKIKFEKGQPFKPFEQLMG  259

Query  446  VLPASSNHAIPKVFHDLMSSPDSEIIDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLA  505
            V PA+S HA+PK +  LM+ PDS IIDFYPEDF +DLNGK++AWQGV LLPFIDEKRLL 
Sbjct  260  VFPAASKHALPKPYQALMTDPDSPIIDFYPEDFEIDLNGKRYAWQGVALLPFIDEKRLLE  319

Query  506  AMEKKYPLLTEDEKLRNSVGREVLLISEAHPLYQDLVANFYSKKQGVQKYKLNM-RISDG  564
            A+ K    LTE+E  RN+ G ++L +S+ HPL +  + + Y ++  V   K  +  +SDG
Sbjct  320  ALRKLENELTEEEVKRNTRGLDMLFVSKTHPLAESFIQSIYEQEDFV---KRAIDPLSDG  376

Query  565  LAGKVERNEAYIPHSSLPSSLEEYGMPSLEDD  596
            + G +  +E  +  + + S L+  G+  + D+
Sbjct  377  MGGSIALHEETVVGNIVSSPLK--GLNDIRDN  406



Lambda      K        H        a         alpha
   0.317    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0789    0.140     1.90     42.6     43.6 

Effective search space used: 753191712


Query= TCONS_00007693

Length=629
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:375377 pfam17846, XRN_M, Xrn1 helical domain. This helical do...  472     4e-163
CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus. Th...  106     2e-26 


>CDD:375377 pfam17846, XRN_M, Xrn1 helical domain.  This helical domain is 
part of the Xrn1 catalytic core. Xrn1 is a cytoplasmic 5'-3' 
exonuclease that degrades decapped mRNAs.
Length=442

 Score = 472 bits (1216),  Expect = 4e-163, Method: Composition-based stats.
 Identities = 194/516 (38%), Positives = 271/516 (53%), Gaps = 109/516 (21%)

Query  117  PFDLERALDDWVFMCFFVGNDFLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTEDGHV  176
             FD ER +DD+VFMCFFVGNDFLPHLPSL+IRE  ID L+ +++      GGYLT++G+V
Sbjct  1    QFDFERIIDDFVFMCFFVGNDFLPHLPSLEIREGAIDLLMTVYKKEFYKTGGYLTDNGYV  60

Query  177  DLKRAQLILQGLAKQEDAIFRRRRQAEERKLANEKRRKQEAKAREEERARKRRRSSPTYE  236
            +L R +L +  +   E+ IFR+R++ E+RK     RR++ +                   
Sbjct  61   NLDRVELFVSLVGTYEEKIFRKRQRREDRKRRRLARREEAS-------------------  101

Query  237  PMDSPVGHRAPRGGGDAAPPNQLELITPSRGELSRQTRELTHSMVVNRGAVYRANMANKS  296
                                                                + +  N  
Sbjct  102  ----------------------------------------------------KEDDTNLE  109

Query  297  AAAVLKSKLMQGSQNGQNGEEKSEGATTNNDEPSQDQPDQTEQTSPSVLGKRKADLVEEE  356
            AA            N  N    S  A + N  PS +     E        K  ++L E+ 
Sbjct  110  AA------------NATNPSVGSHKAGSANATPSNESEASAE-------AKATSELREKN  150

Query  357  DTDAGTPGRDSPAVPVAAKEDELPPDTVRLWEEGYADRYYEQKFGV-DPQDKEFRHK-VA  414
              +      DS       + D    D VRL E G+ +RYY++KF V   +D EFR + V 
Sbjct  151  GKEL----DDS-------ESDGDGVDKVRLGEPGWKERYYKEKFSVKSTEDIEFRREDVV  199

Query  415  RAYAEGLAWVLLYYFQGCPSWTWYYPYHYAPFAADFVDIGDMEITFDKGVPFKPFEQLMG  474
            + Y EGL WVL YY+QGC SWTW+YPYHYAPFA+D  ++  ++I F+KG PFKPFEQLMG
Sbjct  200  QKYVEGLCWVLRYYYQGCCSWTWFYPYHYAPFASDLKNLAQLKIKFEKGQPFKPFEQLMG  259

Query  475  VLPASSNHAIPKVFHDLMSSPDSEIIDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLA  534
            V PA+S HA+PK +  LM+ PDS IIDFYPEDF +DLNGK++AWQGV LLPFIDEKRLL 
Sbjct  260  VFPAASKHALPKPYQALMTDPDSPIIDFYPEDFEIDLNGKRYAWQGVALLPFIDEKRLLE  319

Query  535  AMEKKYPLLTEDEKLRNSVGREVLLISEAHPLYQDLVANFYSKKQGVQKYKLNM-RISDG  593
            A+ K    LTE+E  RN+ G ++L +S+ HPL +  + + Y ++  V   K  +  +SDG
Sbjct  320  ALRKLENELTEEEVKRNTRGLDMLFVSKTHPLAESFIQSIYEQEDFV---KRAIDPLSDG  376

Query  594  LAGKVERNEAYIPHSSLPSSLEEYGMPSLEDDRSLT  629
            + G +  +E  +  + + S L+  G+  + D+  L 
Sbjct  377  MGGSIALHEETVVGNIVSSPLK--GLNDIRDNSVLC  410


>CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus.  This family 
aligns residues towards the N-terminus of several proteins 
with multiple functions. The members of this family all appear 
to possess 5'-3' exonuclease activity EC:3.1.11.-. Thus, 
the aligned region may be necessary for 5' to 3' exonuclease 
function. The family also contains several Xrn1 and Xrn2 
proteins. The 5'-3' exoribonucleases Xrn1p and Xrn2p/Rat1p 
function in the degradation and processing of several classes 
of RNA in Saccharomyces cerevisiae. Xrn1p is the main enzyme 
catalyzing cytoplasmic mRNA degradation in multiple decay 
pathways, whereas Xrn2p/Rat1p functions in the processing of 
rRNAs and small nucleolar RNAs (snoRNAs) in the nucleus.
Length=231

 Score = 106 bits (266),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 33/42 (79%), Positives = 38/42 (90%), Gaps = 0/42 (0%)

Query  1    MEFIRSQRAAPEHDPNTRHVIYGLDADLIMLGLATHEPHFRV  42
            M+FIR QR+ P++DPNTRH IYGLDADLIMLGLATHEPHF +
Sbjct  190  MDFIRKQRSQPDYDPNTRHCIYGLDADLIMLGLATHEPHFSI  231



Lambda      K        H        a         alpha
   0.317    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790487440


Query= TCONS_00002348

Length=948
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:375377 pfam17846, XRN_M, Xrn1 helical domain. This helical do...  505     1e-171
CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus. Th...  281     5e-89 


>CDD:375377 pfam17846, XRN_M, Xrn1 helical domain.  This helical domain is 
part of the Xrn1 catalytic core. Xrn1 is a cytoplasmic 5'-3' 
exonuclease that degrades decapped mRNAs.
Length=442

 Score = 505 bits (1302),  Expect = 1e-171, Method: Composition-based stats.
 Identities = 205/548 (37%), Positives = 288/548 (53%), Gaps = 109/548 (20%)

Query  220  PFDLERALDDWVFMCFFVGNDFLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTEDGHV  279
             FD ER +DD+VFMCFFVGNDFLPHLPSL+IRE  ID L+ +++      GGYLT++G+V
Sbjct  1    QFDFERIIDDFVFMCFFVGNDFLPHLPSLEIREGAIDLLMTVYKKEFYKTGGYLTDNGYV  60

Query  280  DLKRAQLILQGLAKQEDAIFRRRRQAEERKLANEKRRKQEAKAREEERARKRRRSSPTYE  339
            +L R +L +  +   E+ IFR+R++ E+RK     RR++                     
Sbjct  61   NLDRVELFVSLVGTYEEKIFRKRQRREDRKRRRLARREE---------------------  99

Query  340  PMDSPVGHRAPRGGGDAAPPNQLELITPSRGELSRQTRELTHSMVVNRGAVYRANMANKS  399
                                                                + +  N  
Sbjct  100  --------------------------------------------------ASKEDDTNLE  109

Query  400  AAAVLKSKLMQGSQNGQNGEEKSEGATTNNDEPSQDQPDQTEQTSPSVLGKRKADLVEEE  459
            AA            N  N    S  A + N  PS +     E        K  ++L E+ 
Sbjct  110  AA------------NATNPSVGSHKAGSANATPSNESEASAE-------AKATSELREKN  150

Query  460  DTDAGTPGRDSPAVPVAAKEDELPPDTVRLWEEGYADRYYEQKFGV-DPQDKEFRHK-VA  517
              +      DS       + D    D VRL E G+ +RYY++KF V   +D EFR + V 
Sbjct  151  GKEL----DDS-------ESDGDGVDKVRLGEPGWKERYYKEKFSVKSTEDIEFRREDVV  199

Query  518  RAYAEGLAWVLLYYFQGCPSWTWYYPYHYAPFAADFVDIGDMEITFDKGVPFKPFEQLMG  577
            + Y EGL WVL YY+QGC SWTW+YPYHYAPFA+D  ++  ++I F+KG PFKPFEQLMG
Sbjct  200  QKYVEGLCWVLRYYYQGCCSWTWFYPYHYAPFASDLKNLAQLKIKFEKGQPFKPFEQLMG  259

Query  578  VLPASSNHAIPKVFHDLMSSPDSEIIDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLA  637
            V PA+S HA+PK +  LM+ PDS IIDFYPEDF +DLNGK++AWQGV LLPFIDEKRLL 
Sbjct  260  VFPAASKHALPKPYQALMTDPDSPIIDFYPEDFEIDLNGKRYAWQGVALLPFIDEKRLLE  319

Query  638  AMEKKYPLLTEDEKLRNSVGREVLLISEAHPLYQDLVANFYSKKQGVQKYKLNM-RISDG  696
            A+ K    LTE+E  RN+ G ++L +S+ HPL +  + + Y ++  V   K  +  +SDG
Sbjct  320  ALRKLENELTEEEVKRNTRGLDMLFVSKTHPLAESFIQSIYEQEDFV---KRAIDPLSDG  376

Query  697  LAGKVERNEAYIPHSSLPSSLEEYGMPSLEDDRSLTVNYEIPKSNHVHKSMLLRGVKFNP  756
            + G +  +E  +  + + S L+  G+  + D+  L V YE+P+ ++ H ++LL GV    
Sbjct  377  MGGSIALHEETVVGNIVSSPLK--GLNDIRDNSVLCVFYELPQYDYSHIAVLLPGVIDPE  434

Query  757  PALDNADI  764
              L   D+
Sbjct  435  KVLTPEDL  442


>CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus.  This family 
aligns residues towards the N-terminus of several proteins 
with multiple functions. The members of this family all appear 
to possess 5'-3' exonuclease activity EC:3.1.11.-. Thus, 
the aligned region may be necessary for 5' to 3' exonuclease 
function. The family also contains several Xrn1 and Xrn2 
proteins. The 5'-3' exoribonucleases Xrn1p and Xrn2p/Rat1p 
function in the degradation and processing of several classes 
of RNA in Saccharomyces cerevisiae. Xrn1p is the main enzyme 
catalyzing cytoplasmic mRNA degradation in multiple decay 
pathways, whereas Xrn2p/Rat1p functions in the processing of 
rRNAs and small nucleolar RNAs (snoRNAs) in the nucleus.
Length=231

 Score = 281 bits (722),  Expect = 5e-89, Method: Composition-based stats.
 Identities = 96/145 (66%), Positives = 117/145 (81%), Gaps = 7/145 (5%)

Query  1    MNQQRARRFRSAQEAKEADEKKEEFRKMLAKQNGNKVDEELQEEVVKKTWDSNVITPGTP  60
            MNQQR+RRFRSA+EA+E +EK EE R+ L K+ G +  EE       +T+DSN ITPGT 
Sbjct  94   MNQQRSRRFRSAKEAEELEEKAEELREELEKEGGEEPPEE-------ETFDSNCITPGTE  146

Query  61   FMDILAASLRYWIAYKLNTDPAWEKLKIIISDATVPGEGEHKIMEFIRSQRAAPEHDPNT  120
            FM+ L+ +LRY+I  KLNTDPAW+ LK+I+SDA VPGEGEHKIM+FIR QR+ P++DPNT
Sbjct  147  FMEKLSEALRYYIKKKLNTDPAWKNLKVILSDANVPGEGEHKIMDFIRKQRSQPDYDPNT  206

Query  121  RHVIYGLDADLIMLGLATHEPHFRV  145
            RH IYGLDADLIMLGLATHEPHF +
Sbjct  207  RHCIYGLDADLIMLGLATHEPHFSI  231



Lambda      K        H        a         alpha
   0.315    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1206326352


Query= TCONS_00002349

Length=1058
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:375377 pfam17846, XRN_M, Xrn1 helical domain. This helical do...  503     8e-170
CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus. Th...  467     5e-159


>CDD:375377 pfam17846, XRN_M, Xrn1 helical domain.  This helical domain is 
part of the Xrn1 catalytic core. Xrn1 is a cytoplasmic 5'-3' 
exonuclease that degrades decapped mRNAs.
Length=442

 Score = 503 bits (1298),  Expect = 8e-170, Method: Composition-based stats.
 Identities = 205/548 (37%), Positives = 288/548 (53%), Gaps = 109/548 (20%)

Query  330  PFDLERALDDWVFMCFFVGNDFLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTEDGHV  389
             FD ER +DD+VFMCFFVGNDFLPHLPSL+IRE  ID L+ +++      GGYLT++G+V
Sbjct  1    QFDFERIIDDFVFMCFFVGNDFLPHLPSLEIREGAIDLLMTVYKKEFYKTGGYLTDNGYV  60

Query  390  DLKRAQLILQGLAKQEDAIFRRRRQAEERKLANEKRRKQEAKAREEERARKRRRSSPTYE  449
            +L R +L +  +   E+ IFR+R++ E+RK     RR++                     
Sbjct  61   NLDRVELFVSLVGTYEEKIFRKRQRREDRKRRRLARREE---------------------  99

Query  450  PMDSPVGHRAPRGGGDAAPPNQLELITPSRGELSRQTRELTHSMVVNRGAVYRANMANKS  509
                                                                + +  N  
Sbjct  100  --------------------------------------------------ASKEDDTNLE  109

Query  510  AAAVLKSKLMQGSQNGQNGEEKSEGATTNNDEPSQDQPDQTEQTSPSVLGKRKADLVEEE  569
            AA            N  N    S  A + N  PS +     E        K  ++L E+ 
Sbjct  110  AA------------NATNPSVGSHKAGSANATPSNESEASAE-------AKATSELREKN  150

Query  570  DTDAGTPGRDSPAVPVAAKEDELPPDTVRLWEEGYADRYYEQKFGV-DPQDKEFRHK-VA  627
              +      DS       + D    D VRL E G+ +RYY++KF V   +D EFR + V 
Sbjct  151  GKEL----DDS-------ESDGDGVDKVRLGEPGWKERYYKEKFSVKSTEDIEFRREDVV  199

Query  628  RAYAEGLAWVLLYYFQGCPSWTWYYPYHYAPFAADFVDIGDMEITFDKGVPFKPFEQLMG  687
            + Y EGL WVL YY+QGC SWTW+YPYHYAPFA+D  ++  ++I F+KG PFKPFEQLMG
Sbjct  200  QKYVEGLCWVLRYYYQGCCSWTWFYPYHYAPFASDLKNLAQLKIKFEKGQPFKPFEQLMG  259

Query  688  VLPASSNHAIPKVFHDLMSSPDSEIIDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLA  747
            V PA+S HA+PK +  LM+ PDS IIDFYPEDF +DLNGK++AWQGV LLPFIDEKRLL 
Sbjct  260  VFPAASKHALPKPYQALMTDPDSPIIDFYPEDFEIDLNGKRYAWQGVALLPFIDEKRLLE  319

Query  748  AMEKKYPLLTEDEKLRNSVGREVLLISEAHPLYQDLVANFYSKKQGVQKYKLNM-RISDG  806
            A+ K    LTE+E  RN+ G ++L +S+ HPL +  + + Y ++  V   K  +  +SDG
Sbjct  320  ALRKLENELTEEEVKRNTRGLDMLFVSKTHPLAESFIQSIYEQEDFV---KRAIDPLSDG  376

Query  807  LAGKVERNEAYIPHSSLPSSLEEYGMPSLEDDRSLTVNYEIPKSNHVHKSMLLRGVKFNP  866
            + G +  +E  +  + + S L+  G+  + D+  L V YE+P+ ++ H ++LL GV    
Sbjct  377  MGGSIALHEETVVGNIVSSPLK--GLNDIRDNSVLCVFYELPQYDYSHIAVLLPGVIDPE  434

Query  867  PALDNADI  874
              L   D+
Sbjct  435  KVLTPEDL  442


>CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus.  This family 
aligns residues towards the N-terminus of several proteins 
with multiple functions. The members of this family all appear 
to possess 5'-3' exonuclease activity EC:3.1.11.-. Thus, 
the aligned region may be necessary for 5' to 3' exonuclease 
function. The family also contains several Xrn1 and Xrn2 
proteins. The 5'-3' exoribonucleases Xrn1p and Xrn2p/Rat1p 
function in the degradation and processing of several classes 
of RNA in Saccharomyces cerevisiae. Xrn1p is the main enzyme 
catalyzing cytoplasmic mRNA degradation in multiple decay 
pathways, whereas Xrn2p/Rat1p functions in the processing of 
rRNAs and small nucleolar RNAs (snoRNAs) in the nucleus.
Length=231

 Score = 467 bits (1204),  Expect = 5e-159, Method: Composition-based stats.
 Identities = 162/254 (64%), Positives = 191/254 (75%), Gaps = 23/254 (9%)

Query  2    GVPALFRWLSNKYPKIISPVIEELPYEVNGEEIPVDITKPNPNGEEMDNLYLDMNGIVHP  61
            GVPA FRWLS +YP IIS VIEE                  PNG+E DNLYLDMNGI+HP
Sbjct  1    GVPAFFRWLSERYPLIISQVIEE----------------SRPNGKEFDNLYLDMNGIIHP  44

Query  62   CTHPEGKPPPANEQEMMVEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARRFRS  121
            C+HPE  P P  E+EM   IF Y DR+ N+VRPRKLL +AVDGVAPRAKMNQQR+RRFRS
Sbjct  45   CSHPEDGPAPKTEEEMFKNIFAYIDRLFNIVRPRKLLYMAVDGVAPRAKMNQQRSRRFRS  104

Query  122  AQEAKEADEKKEEFRKMLAKQNGNKVDEELQEEVVKKTWDSNVITPGTPFMDILAASLRY  181
            A+EA+E +EK EE R+ L K+ G +  EE       +T+DSN ITPGT FM+ L+ +LRY
Sbjct  105  AKEAEELEEKAEELREELEKEGGEEPPEE-------ETFDSNCITPGTEFMEKLSEALRY  157

Query  182  WIAYKLNTDPAWEKLKIIISDATVPGEGEHKIMEFIRSQRAAPEHDPNTRHVIYGLDADL  241
            +I  KLNTDPAW+ LK+I+SDA VPGEGEHKIM+FIR QR+ P++DPNTRH IYGLDADL
Sbjct  158  YIKKKLNTDPAWKNLKVILSDANVPGEGEHKIMDFIRKQRSQPDYDPNTRHCIYGLDADL  217

Query  242  IMLGLATHEPHFRV  255
            IMLGLATHEPHF +
Sbjct  218  IMLGLATHEPHFSI  231



Lambda      K        H        a         alpha
   0.315    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1362072712


Query= TCONS_00002350

Length=968
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:375377 pfam17846, XRN_M, Xrn1 helical domain. This helical do...  503     1e-170
CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus. Th...  466     1e-159


>CDD:375377 pfam17846, XRN_M, Xrn1 helical domain.  This helical domain is 
part of the Xrn1 catalytic core. Xrn1 is a cytoplasmic 5'-3' 
exonuclease that degrades decapped mRNAs.
Length=442

 Score = 503 bits (1297),  Expect = 1e-170, Method: Composition-based stats.
 Identities = 205/548 (37%), Positives = 288/548 (53%), Gaps = 109/548 (20%)

Query  330  PFDLERALDDWVFMCFFVGNDFLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTEDGHV  389
             FD ER +DD+VFMCFFVGNDFLPHLPSL+IRE  ID L+ +++      GGYLT++G+V
Sbjct  1    QFDFERIIDDFVFMCFFVGNDFLPHLPSLEIREGAIDLLMTVYKKEFYKTGGYLTDNGYV  60

Query  390  DLKRAQLILQGLAKQEDAIFRRRRQAEERKLANEKRRKQEAKAREEERARKRRRSSPTYE  449
            +L R +L +  +   E+ IFR+R++ E+RK     RR++                     
Sbjct  61   NLDRVELFVSLVGTYEEKIFRKRQRREDRKRRRLARREE---------------------  99

Query  450  PMDSPVGHRAPRGGGDAAPPNQLELITPSRGELSRQTRELTHSMVVNRGAVYRANMANKS  509
                                                                + +  N  
Sbjct  100  --------------------------------------------------ASKEDDTNLE  109

Query  510  AAAVLKSKLMQGSQNGQNGEEKSEGATTNNDEPSQDQPDQTEQTSPSVLGKRKADLVEEE  569
            AA            N  N    S  A + N  PS +     E        K  ++L E+ 
Sbjct  110  AA------------NATNPSVGSHKAGSANATPSNESEASAE-------AKATSELREKN  150

Query  570  DTDAGTPGRDSPAVPVAAKEDELPPDTVRLWEEGYADRYYEQKFGV-DPQDKEFRHK-VA  627
              +      DS       + D    D VRL E G+ +RYY++KF V   +D EFR + V 
Sbjct  151  GKEL----DDS-------ESDGDGVDKVRLGEPGWKERYYKEKFSVKSTEDIEFRREDVV  199

Query  628  RAYAEGLAWVLLYYFQGCPSWTWYYPYHYAPFAADFVDIGDMEITFDKGVPFKPFEQLMG  687
            + Y EGL WVL YY+QGC SWTW+YPYHYAPFA+D  ++  ++I F+KG PFKPFEQLMG
Sbjct  200  QKYVEGLCWVLRYYYQGCCSWTWFYPYHYAPFASDLKNLAQLKIKFEKGQPFKPFEQLMG  259

Query  688  VLPASSNHAIPKVFHDLMSSPDSEIIDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLA  747
            V PA+S HA+PK +  LM+ PDS IIDFYPEDF +DLNGK++AWQGV LLPFIDEKRLL 
Sbjct  260  VFPAASKHALPKPYQALMTDPDSPIIDFYPEDFEIDLNGKRYAWQGVALLPFIDEKRLLE  319

Query  748  AMEKKYPLLTEDEKLRNSVGREVLLISEAHPLYQDLVANFYSKKQGVQKYKLNM-RISDG  806
            A+ K    LTE+E  RN+ G ++L +S+ HPL +  + + Y ++  V   K  +  +SDG
Sbjct  320  ALRKLENELTEEEVKRNTRGLDMLFVSKTHPLAESFIQSIYEQEDFV---KRAIDPLSDG  376

Query  807  LAGKVERNEAYIPHSSLPSSLEEYGMPSLEDDRSLTVNYEIPKSNHVHKSMLLRGVKFNP  866
            + G +  +E  +  + + S L+  G+  + D+  L V YE+P+ ++ H ++LL GV    
Sbjct  377  MGGSIALHEETVVGNIVSSPLK--GLNDIRDNSVLCVFYELPQYDYSHIAVLLPGVIDPE  434

Query  867  PALDNADI  874
              L   D+
Sbjct  435  KVLTPEDL  442


>CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus.  This family 
aligns residues towards the N-terminus of several proteins 
with multiple functions. The members of this family all appear 
to possess 5'-3' exonuclease activity EC:3.1.11.-. Thus, 
the aligned region may be necessary for 5' to 3' exonuclease 
function. The family also contains several Xrn1 and Xrn2 
proteins. The 5'-3' exoribonucleases Xrn1p and Xrn2p/Rat1p 
function in the degradation and processing of several classes 
of RNA in Saccharomyces cerevisiae. Xrn1p is the main enzyme 
catalyzing cytoplasmic mRNA degradation in multiple decay 
pathways, whereas Xrn2p/Rat1p functions in the processing of 
rRNAs and small nucleolar RNAs (snoRNAs) in the nucleus.
Length=231

 Score = 466 bits (1201),  Expect = 1e-159, Method: Composition-based stats.
 Identities = 162/254 (64%), Positives = 191/254 (75%), Gaps = 23/254 (9%)

Query  2    GVPALFRWLSNKYPKIISPVIEELPYEVNGEEIPVDITKPNPNGEEMDNLYLDMNGIVHP  61
            GVPA FRWLS +YP IIS VIEE                  PNG+E DNLYLDMNGI+HP
Sbjct  1    GVPAFFRWLSERYPLIISQVIEE----------------SRPNGKEFDNLYLDMNGIIHP  44

Query  62   CTHPEGKPPPANEQEMMVEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARRFRS  121
            C+HPE  P P  E+EM   IF Y DR+ N+VRPRKLL +AVDGVAPRAKMNQQR+RRFRS
Sbjct  45   CSHPEDGPAPKTEEEMFKNIFAYIDRLFNIVRPRKLLYMAVDGVAPRAKMNQQRSRRFRS  104

Query  122  AQEAKEADEKKEEFRKMLAKQNGNKVDEELQEEVVKKTWDSNVITPGTPFMDILAASLRY  181
            A+EA+E +EK EE R+ L K+ G +  EE       +T+DSN ITPGT FM+ L+ +LRY
Sbjct  105  AKEAEELEEKAEELREELEKEGGEEPPEE-------ETFDSNCITPGTEFMEKLSEALRY  157

Query  182  WIAYKLNTDPAWEKLKIIISDATVPGEGEHKIMEFIRSQRAAPEHDPNTRHVIYGLDADL  241
            +I  KLNTDPAW+ LK+I+SDA VPGEGEHKIM+FIR QR+ P++DPNTRH IYGLDADL
Sbjct  158  YIKKKLNTDPAWKNLKVILSDANVPGEGEHKIMDFIRKQRSQPDYDPNTRHCIYGLDADL  217

Query  242  IMLGLATHEPHFRV  255
            IMLGLATHEPHF +
Sbjct  218  IMLGLATHEPHFSI  231



Lambda      K        H        a         alpha
   0.316    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1234643872


Query= TCONS_00002351

Length=845
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:375377 pfam17846, XRN_M, Xrn1 helical domain. This helical do...  505     3e-173
CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus. Th...  106     2e-26 


>CDD:375377 pfam17846, XRN_M, Xrn1 helical domain.  This helical domain is 
part of the Xrn1 catalytic core. Xrn1 is a cytoplasmic 5'-3' 
exonuclease that degrades decapped mRNAs.
Length=442

 Score = 505 bits (1303),  Expect = 3e-173, Method: Composition-based stats.
 Identities = 205/548 (37%), Positives = 288/548 (53%), Gaps = 109/548 (20%)

Query  117  PFDLERALDDWVFMCFFVGNDFLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTEDGHV  176
             FD ER +DD+VFMCFFVGNDFLPHLPSL+IRE  ID L+ +++      GGYLT++G+V
Sbjct  1    QFDFERIIDDFVFMCFFVGNDFLPHLPSLEIREGAIDLLMTVYKKEFYKTGGYLTDNGYV  60

Query  177  DLKRAQLILQGLAKQEDAIFRRRRQAEERKLANEKRRKQEAKAREEERARKRRRSSPTYE  236
            +L R +L +  +   E+ IFR+R++ E+RK     RR++                     
Sbjct  61   NLDRVELFVSLVGTYEEKIFRKRQRREDRKRRRLARREE---------------------  99

Query  237  PMDSPVGHRAPRGGGDAAPPNQLELITPSRGELSRQTRELTHSMVVNRGAVYRANMANKS  296
                                                                + +  N  
Sbjct  100  --------------------------------------------------ASKEDDTNLE  109

Query  297  AAAVLKSKLMQGSQNGQNGEEKSEGATTNNDEPSQDQPDQTEQTSPSVLGKRKADLVEEE  356
            AA            N  N    S  A + N  PS +     E        K  ++L E+ 
Sbjct  110  AA------------NATNPSVGSHKAGSANATPSNESEASAE-------AKATSELREKN  150

Query  357  DTDAGTPGRDSPAVPVAAKEDELPPDTVRLWEEGYADRYYEQKFGV-DPQDKEFRHK-VA  414
              +      DS       + D    D VRL E G+ +RYY++KF V   +D EFR + V 
Sbjct  151  GKEL----DDS-------ESDGDGVDKVRLGEPGWKERYYKEKFSVKSTEDIEFRREDVV  199

Query  415  RAYAEGLAWVLLYYFQGCPSWTWYYPYHYAPFAADFVDIGDMEITFDKGVPFKPFEQLMG  474
            + Y EGL WVL YY+QGC SWTW+YPYHYAPFA+D  ++  ++I F+KG PFKPFEQLMG
Sbjct  200  QKYVEGLCWVLRYYYQGCCSWTWFYPYHYAPFASDLKNLAQLKIKFEKGQPFKPFEQLMG  259

Query  475  VLPASSNHAIPKVFHDLMSSPDSEIIDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLA  534
            V PA+S HA+PK +  LM+ PDS IIDFYPEDF +DLNGK++AWQGV LLPFIDEKRLL 
Sbjct  260  VFPAASKHALPKPYQALMTDPDSPIIDFYPEDFEIDLNGKRYAWQGVALLPFIDEKRLLE  319

Query  535  AMEKKYPLLTEDEKLRNSVGREVLLISEAHPLYQDLVANFYSKKQGVQKYKLNM-RISDG  593
            A+ K    LTE+E  RN+ G ++L +S+ HPL +  + + Y ++  V   K  +  +SDG
Sbjct  320  ALRKLENELTEEEVKRNTRGLDMLFVSKTHPLAESFIQSIYEQEDFV---KRAIDPLSDG  376

Query  594  LAGKVERNEAYIPHSSLPSSLEEYGMPSLEDDRSLTVNYEIPKSNHVHKSMLLRGVKFNP  653
            + G +  +E  +  + + S L+  G+  + D+  L V YE+P+ ++ H ++LL GV    
Sbjct  377  MGGSIALHEETVVGNIVSSPLK--GLNDIRDNSVLCVFYELPQYDYSHIAVLLPGVIDPE  434

Query  654  PALDNADI  661
              L   D+
Sbjct  435  KVLTPEDL  442


>CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus.  This family 
aligns residues towards the N-terminus of several proteins 
with multiple functions. The members of this family all appear 
to possess 5'-3' exonuclease activity EC:3.1.11.-. Thus, 
the aligned region may be necessary for 5' to 3' exonuclease 
function. The family also contains several Xrn1 and Xrn2 
proteins. The 5'-3' exoribonucleases Xrn1p and Xrn2p/Rat1p 
function in the degradation and processing of several classes 
of RNA in Saccharomyces cerevisiae. Xrn1p is the main enzyme 
catalyzing cytoplasmic mRNA degradation in multiple decay 
pathways, whereas Xrn2p/Rat1p functions in the processing of 
rRNAs and small nucleolar RNAs (snoRNAs) in the nucleus.
Length=231

 Score = 106 bits (267),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 33/42 (79%), Positives = 38/42 (90%), Gaps = 0/42 (0%)

Query  1    MEFIRSQRAAPEHDPNTRHVIYGLDADLIMLGLATHEPHFRV  42
            M+FIR QR+ P++DPNTRH IYGLDADLIMLGLATHEPHF +
Sbjct  190  MDFIRKQRSQPDYDPNTRHCIYGLDADLIMLGLATHEPHFSI  231



Lambda      K        H        a         alpha
   0.316    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1076635500


Query= TCONS_00002352

Length=1578
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase. Th...  391     7e-126
CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshik...  377     1e-118
CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  256     3e-78 
CDD:426122 pfam01202, SKI, Shikimate kinase                           168     1e-48 
CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...  116     2e-31 


>CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase.  The 3-dehydroquinate 
synthase EC:4.6.1.3 domain is present in isolation 
in various bacterial 3-dehydroquinate synthases and also 
present as a domain in the pentafunctional AROM polypeptide. 
3-dehydroquinate (DHQ) synthase catalyzes the formation of 
dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino 
heptulosonic 7 phosphate. This reaction is part of the shikimate 
pathway which is involved in the biosynthesis of aromatic 
amino acids.
Length=260

 Score = 391 bits (1006),  Expect = 7e-126, Method: Composition-based stats.
 Identities = 145/286 (51%), Positives = 176/286 (62%), Gaps = 28/286 (10%)

Query  74   IYNAPPGEVSKSRQTKADIEDWMLSQSPPCGRDTVVIALGGGVIGDLTGFVAATYMRGVR  133
                P GE SK+ +T   I D +L       R +++IALGGGVIGDL GFVAATYMRG+R
Sbjct  1    TIVIPDGEKSKTLETLERIYDALLEAG--LDRSSLLIALGGGVIGDLAGFVAATYMRGIR  58

Query  134  FVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPSRIYIDLEFLETLPVREFINGMA  193
            F+QVPTTLLA VDSS+GGKT I+ PLGKNLIGA +QP  + IDL+FL+TLP REF  G+A
Sbjct  59   FIQVPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDLDFLKTLPDREFRAGLA  118

Query  194  EVIKTAAISSEEEFTALEDNAETILSAVRREVKPGQRRFEGIEEILKARILASARHKAFV  253
            EVIK   I+  E F  LE+NAE +L+                 + L+  I  S   KA V
Sbjct  119  EVIKYGLIADAEFFEWLEENAEALLNL--------------DPDALEEAIARSCEVKADV  164

Query  254  VSADEREGGLRNLLNWGHSIGHAIEAILTP-QILHGECVAIGMVKEAELARHLGILKGVA  312
            V+ DE+E GLR LLN GH+ GHAIEA+     +LHGE VAIGMV  A L+  LG+L    
Sbjct  165  VAQDEKESGLRALLNLGHTFGHAIEALSGYGALLHGEAVAIGMVLAARLSERLGLLDEAD  224

Query  313  VARIVKCIAAYGLPTSLKDSRIRKLTAGKHCSVDQILFNMALDKKN  358
            V RI   +  YGLPTSL D             V+Q+L  MA DKK 
Sbjct  225  VERIRALLKKYGLPTSLPDL-----------DVEQLLAAMARDKKV  259


>CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase). 
 
Length=415

 Score = 377 bits (971),  Expect = 1e-118, Method: Composition-based stats.
 Identities = 166/428 (39%), Positives = 226/428 (53%), Gaps = 26/428 (6%)

Query  411  PPGSKSISNRALVLAALGSGTVRIKNLLHSDDTEVMLNALERLGAATFSWEEEGEVLVVN  470
             PGSKS S+RAL+LAAL +G   I NLL SDDT  ML AL  LGA     ++E  V++V 
Sbjct  12   IPGSKSNSHRALILAALAAGESTITNLLDSDDTLTMLEALRALGAEIIKLDDEKSVVIVE  71

Query  471  GKGGALQA-HPSPLYLGNAGTASRFLTTVATLATASSVDSSVLTGNNRMKQRPIGDLVDA  529
            G GG+ +A     L +GN+GTA R LT    L +       VL G+  + +RP+  L+DA
Sbjct  72   GLGGSFEAPEDLVLDMGNSGTALRPLTGRLALQSG----EVVLPGDCSIGKRPMDRLLDA  127

Query  530  LTANGAQIEYVENKGSLPLKIAASGGFTGGQINLAAKVSSQYVSSLLMCAP-YAKEPVTL  588
            L   GA+IE  E     PLK+    G   G I++   VSSQ+V+SLLM A   A+   T+
Sbjct  128  LRQLGAEIEGREGYNYAPLKVR---GLRLGGIHIDGDVSSQFVTSLLMLAALLAEGTTTI  184

Query  589  KLVGGKPISQPYIDMTTAMMRSFGIDVKKSTTEEHTYHIPQGRYINPAEYVVESDASSAT  648
            +       S+PYID T  M++ FG  ++ S TE         +     EY VE D SSA 
Sbjct  185  E----NLASEPYIDDTENMLKKFGAKIEGSGTELSITVKGGEKLP-GQEYRVEGDRSSAA  239

Query  649  YPLAIAAVTGTTCTIPNIGSKSLQGDARFAVDVLRPMGCTVEQTDTSTTVTGPADGVLRP  708
            Y L  AA+TG T T+ N+G  SLQGD    +++L  MG  + Q + +  V GP    LR 
Sbjct  240  YFLVAAAITGGTVTVENVGINSLQGD-EALLEILEKMGAEITQEEDADIVVGP--PGLRG  296

Query  709  LPNVDMEPMTDAFLGASVLAAIARGKDSNHTTRIYGIANQRVKECNRIKAMHDELAKFGV  768
               VD+    D     +VLAA A G     TTRI GI+  RVKE +R+ AM  EL + G 
Sbjct  297  KA-VDIRTAPDPAPTTAVLAAFAEG-----TTRIEGISELRVKETDRLFAMATELRRLGA  350

Query  769  VCREHDDGLEIDGIDRSTLRQPAGGVFCYDDHRVAFSFSVLSLIAPKPTLILEKECVGKT  828
               E  DGL I     +        V  Y DHR+A + ++  L+A   T+I + EC  ++
Sbjct  351  DVEELPDGLIIIP---AVKELKGAEVDSYGDHRIAMALALAGLVAEGETIIDDIECTDRS  407

Query  829  WPGWWDTL  836
            +P + + L
Sbjct  408  FPDFEEKL  415


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 256 bits (656),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 89/235 (38%), Positives = 141/235 (60%), Gaps = 14/235 (6%)

Query  1053  FVSLTLPDVRGADQILEQACVGSDAVELRVDLLEDPDSSNGIPTVDFVADQISYLRSRIT  1112
              V LT   +    + LE    G+D VELRVDLLE+P         + V++Q++ LR    
Sbjct  1     CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEPVED-----AEDVSEQLALLRRVGD  55

Query  1113  LPVIFTIRTKGQGGRFPDDAHAEAMQLYRLAVRSGCEFVDLEIAFPDEMLRAVTEMK--G  1170
             LP+IFT RTK +GG  PD +  E ++L RLA+R G ++VD+E+  P+E+L+ + E K  G
Sbjct  56    LPLIFTFRTKSEGGE-PDGSEEEYLELLRLALRLGVDYVDVELFLPEEILKELIEAKHEG  114

Query  1171  YSKIIASHHDPNGELSWANMSWMKYYNRALEYG-DVIKLVGVARNLDDNTALRKFKNWAE  1229
              +K+I S+HD  G  SW     +  Y +    G D++K+  +A++++D  AL +F +  +
Sbjct  115   GTKVIGSYHDFEGTPSWE--ELISRYEKMQALGADIVKIAVMAKSIEDVLALLRFTSEMK  172

Query  1230  EAHDVPLIAINMGGNGQLSRILNGFM-TPVSHPAL--PFRAAPGQLSATDIRKGL  1281
                D PLIA++MG  G++SR+L     +PV+  AL    ++APGQL+A ++R+ L
Sbjct  173   SLADKPLIAMSMGELGRISRVLGPIFGSPVTFAALGLAEKSAPGQLTAKELREAL  227


>CDD:426122 pfam01202, SKI, Shikimate kinase.  
Length=159

 Score = 168 bits (429),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)

Query  873   RGAGKTTSGHWVASTLKRPFIDLDDELERIEGMTIPDIIKQRGWQGFRDAELNLLQRTMK  932
              GAGK+T G  +A  L  PFID D+E+E+  GM+I +I ++ G +GFR  E  +L+  + 
Sbjct  1     MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLA  60

Query  933   ERPTGHVFACGGGVVEIPEARKLLIDWHKTKGNVLLIMRDIKQVMAFLNIDKTRPAYVED  992
             E   G V A GGG V   E R LL    K +G V+ +   ++ ++  L  DKTRP     
Sbjct  61    EH--GLVIATGGGAVLSEENRDLL----KERGIVIYLDAPLEVLLERLKRDKTRPLLQNK  114

Query  993   MLGVWLRRKPWFQECSNIQYYSQHAS-AGLPRASEDFARFIKFVT  1036
                  L    + +     +  +            E     ++ + 
Sbjct  115   DPEEELLELLFEERDPLYEEAADIVIDTDESSPEEVATEILEALE  159


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score = 116 bits (293),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 39/83 (47%), Positives = 52/83 (63%), Gaps = 2/83 (2%)

Query  1294  LFGSPISESRSPALHNTLFAEMGLPHEYTRLETA--NVEDVKDFIRAPDFGGASVTIPLK  1351
             + G+PIS S SPA+HN  F  +GL   Y   E    N+ D  + +RA  F G +VTIP K
Sbjct  1     VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  1352  LDIMPLLDEITAEAEIIGAVNTV  1374
                +PLLDE++ EA+ IGAVNT+
Sbjct  61    EAAIPLLDELSPEAKAIGAVNTI  83



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2006946798


Query= TCONS_00007694

Length=842
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus. Th...  465     8e-161
CDD:375377 pfam17846, XRN_M, Xrn1 helical domain. This helical do...  471     5e-160


>CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus.  This family 
aligns residues towards the N-terminus of several proteins 
with multiple functions. The members of this family all appear 
to possess 5'-3' exonuclease activity EC:3.1.11.-. Thus, 
the aligned region may be necessary for 5' to 3' exonuclease 
function. The family also contains several Xrn1 and Xrn2 
proteins. The 5'-3' exoribonucleases Xrn1p and Xrn2p/Rat1p 
function in the degradation and processing of several classes 
of RNA in Saccharomyces cerevisiae. Xrn1p is the main enzyme 
catalyzing cytoplasmic mRNA degradation in multiple decay 
pathways, whereas Xrn2p/Rat1p functions in the processing of 
rRNAs and small nucleolar RNAs (snoRNAs) in the nucleus.
Length=231

 Score = 465 bits (1199),  Expect = 8e-161, Method: Composition-based stats.
 Identities = 162/254 (64%), Positives = 191/254 (75%), Gaps = 23/254 (9%)

Query  2    GVPALFRWLSNKYPKIISPVIEELPYEVNGEEIPVDITKPNPNGEEMDNLYLDMNGIVHP  61
            GVPA FRWLS +YP IIS VIEE                  PNG+E DNLYLDMNGI+HP
Sbjct  1    GVPAFFRWLSERYPLIISQVIEE----------------SRPNGKEFDNLYLDMNGIIHP  44

Query  62   CTHPEGKPPPANEQEMMVEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARRFRS  121
            C+HPE  P P  E+EM   IF Y DR+ N+VRPRKLL +AVDGVAPRAKMNQQR+RRFRS
Sbjct  45   CSHPEDGPAPKTEEEMFKNIFAYIDRLFNIVRPRKLLYMAVDGVAPRAKMNQQRSRRFRS  104

Query  122  AQEAKEADEKKEEFRKMLAKQNGNKVDEELQEEVVKKTWDSNVITPGTPFMDILAASLRY  181
            A+EA+E +EK EE R+ L K+ G +  EE       +T+DSN ITPGT FM+ L+ +LRY
Sbjct  105  AKEAEELEEKAEELREELEKEGGEEPPEE-------ETFDSNCITPGTEFMEKLSEALRY  157

Query  182  WIAYKLNTDPAWEKLKIIISDATVPGEGEHKIMEFIRSQRAAPEHDPNTRHVIYGLDADL  241
            +I  KLNTDPAW+ LK+I+SDA VPGEGEHKIM+FIR QR+ P++DPNTRH IYGLDADL
Sbjct  158  YIKKKLNTDPAWKNLKVILSDANVPGEGEHKIMDFIRKQRSQPDYDPNTRHCIYGLDADL  217

Query  242  IMLGLATHEPHFRV  255
            IMLGLATHEPHF +
Sbjct  218  IMLGLATHEPHFSI  231


>CDD:375377 pfam17846, XRN_M, Xrn1 helical domain.  This helical domain is 
part of the Xrn1 catalytic core. Xrn1 is a cytoplasmic 5'-3' 
exonuclease that degrades decapped mRNAs.
Length=442

 Score = 471 bits (1215),  Expect = 5e-160, Method: Composition-based stats.
 Identities = 194/516 (38%), Positives = 271/516 (53%), Gaps = 109/516 (21%)

Query  330  PFDLERALDDWVFMCFFVGNDFLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTEDGHV  389
             FD ER +DD+VFMCFFVGNDFLPHLPSL+IRE  ID L+ +++      GGYLT++G+V
Sbjct  1    QFDFERIIDDFVFMCFFVGNDFLPHLPSLEIREGAIDLLMTVYKKEFYKTGGYLTDNGYV  60

Query  390  DLKRAQLILQGLAKQEDAIFRRRRQAEERKLANEKRRKQEAKAREEERARKRRRSSPTYE  449
            +L R +L +  +   E+ IFR+R++ E+RK     RR++ +                   
Sbjct  61   NLDRVELFVSLVGTYEEKIFRKRQRREDRKRRRLARREEAS-------------------  101

Query  450  PMDSPVGHRAPRGGGDAAPPNQLELITPSRGELSRQTRELTHSMVVNRGAVYRANMANKS  509
                                                                + +  N  
Sbjct  102  ----------------------------------------------------KEDDTNLE  109

Query  510  AAAVLKSKLMQGSQNGQNGEEKSEGATTNNDEPSQDQPDQTEQTSPSVLGKRKADLVEEE  569
            AA            N  N    S  A + N  PS +     E        K  ++L E+ 
Sbjct  110  AA------------NATNPSVGSHKAGSANATPSNESEASAE-------AKATSELREKN  150

Query  570  DTDAGTPGRDSPAVPVAAKEDELPPDTVRLWEEGYADRYYEQKFGV-DPQDKEFRHK-VA  627
              +      DS       + D    D VRL E G+ +RYY++KF V   +D EFR + V 
Sbjct  151  GKEL----DDS-------ESDGDGVDKVRLGEPGWKERYYKEKFSVKSTEDIEFRREDVV  199

Query  628  RAYAEGLAWVLLYYFQGCPSWTWYYPYHYAPFAADFVDIGDMEITFDKGVPFKPFEQLMG  687
            + Y EGL WVL YY+QGC SWTW+YPYHYAPFA+D  ++  ++I F+KG PFKPFEQLMG
Sbjct  200  QKYVEGLCWVLRYYYQGCCSWTWFYPYHYAPFASDLKNLAQLKIKFEKGQPFKPFEQLMG  259

Query  688  VLPASSNHAIPKVFHDLMSSPDSEIIDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLA  747
            V PA+S HA+PK +  LM+ PDS IIDFYPEDF +DLNGK++AWQGV LLPFIDEKRLL 
Sbjct  260  VFPAASKHALPKPYQALMTDPDSPIIDFYPEDFEIDLNGKRYAWQGVALLPFIDEKRLLE  319

Query  748  AMEKKYPLLTEDEKLRNSVGREVLLISEAHPLYQDLVANFYSKKQGVQKYKLNM-RISDG  806
            A+ K    LTE+E  RN+ G ++L +S+ HPL +  + + Y ++  V   K  +  +SDG
Sbjct  320  ALRKLENELTEEEVKRNTRGLDMLFVSKTHPLAESFIQSIYEQEDFV---KRAIDPLSDG  376

Query  807  LAGKVERNEAYIPHSSLPSSLEEYGMPSLEDDRSLT  842
            + G +  +E  +  + + S L+  G+  + D+  L 
Sbjct  377  MGGSIALHEETVVGNIVSSPLK--GLNDIRDNSVLC  410



Lambda      K        H        a         alpha
   0.316    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1072328958


Query= TCONS_00002353

Length=816
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:375377 pfam17846, XRN_M, Xrn1 helical domain. This helical do...  506     1e-173


>CDD:375377 pfam17846, XRN_M, Xrn1 helical domain.  This helical domain is 
part of the Xrn1 catalytic core. Xrn1 is a cytoplasmic 5'-3' 
exonuclease that degrades decapped mRNAs.
Length=442

 Score = 506 bits (1304),  Expect = 1e-173, Method: Composition-based stats.
 Identities = 205/548 (37%), Positives = 288/548 (53%), Gaps = 109/548 (20%)

Query  88   PFDLERALDDWVFMCFFVGNDFLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTEDGHV  147
             FD ER +DD+VFMCFFVGNDFLPHLPSL+IRE  ID L+ +++      GGYLT++G+V
Sbjct  1    QFDFERIIDDFVFMCFFVGNDFLPHLPSLEIREGAIDLLMTVYKKEFYKTGGYLTDNGYV  60

Query  148  DLKRAQLILQGLAKQEDAIFRRRRQAEERKLANEKRRKQEAKAREEERARKRRRSSPTYE  207
            +L R +L +  +   E+ IFR+R++ E+RK     RR++                     
Sbjct  61   NLDRVELFVSLVGTYEEKIFRKRQRREDRKRRRLARREE---------------------  99

Query  208  PMDSPVGHRAPRGGGDAAPPNQLELITPSRGELSRQTRELTHSMVVNRGAVYRANMANKS  267
                                                                + +  N  
Sbjct  100  --------------------------------------------------ASKEDDTNLE  109

Query  268  AAAVLKSKLMQGSQNGQNGEEKSEGATTNNDEPSQDQPDQTEQTSPSVLGKRKADLVEEE  327
            AA            N  N    S  A + N  PS +     E        K  ++L E+ 
Sbjct  110  AA------------NATNPSVGSHKAGSANATPSNESEASAE-------AKATSELREKN  150

Query  328  DTDAGTPGRDSPAVPVAAKEDELPPDTVRLWEEGYADRYYEQKFGV-DPQDKEFRHK-VA  385
              +      DS       + D    D VRL E G+ +RYY++KF V   +D EFR + V 
Sbjct  151  GKEL----DDS-------ESDGDGVDKVRLGEPGWKERYYKEKFSVKSTEDIEFRREDVV  199

Query  386  RAYAEGLAWVLLYYFQGCPSWTWYYPYHYAPFAADFVDIGDMEITFDKGVPFKPFEQLMG  445
            + Y EGL WVL YY+QGC SWTW+YPYHYAPFA+D  ++  ++I F+KG PFKPFEQLMG
Sbjct  200  QKYVEGLCWVLRYYYQGCCSWTWFYPYHYAPFASDLKNLAQLKIKFEKGQPFKPFEQLMG  259

Query  446  VLPASSNHAIPKVFHDLMSSPDSEIIDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLA  505
            V PA+S HA+PK +  LM+ PDS IIDFYPEDF +DLNGK++AWQGV LLPFIDEKRLL 
Sbjct  260  VFPAASKHALPKPYQALMTDPDSPIIDFYPEDFEIDLNGKRYAWQGVALLPFIDEKRLLE  319

Query  506  AMEKKYPLLTEDEKLRNSVGREVLLISEAHPLYQDLVANFYSKKQGVQKYKLNM-RISDG  564
            A+ K    LTE+E  RN+ G ++L +S+ HPL +  + + Y ++  V   K  +  +SDG
Sbjct  320  ALRKLENELTEEEVKRNTRGLDMLFVSKTHPLAESFIQSIYEQEDFV---KRAIDPLSDG  376

Query  565  LAGKVERNEAYIPHSSLPSSLEEYGMPSLEDDRSLTVNYEIPKSNHVHKSMLLRGVKFNP  624
            + G +  +E  +  + + S L+  G+  + D+  L V YE+P+ ++ H ++LL GV    
Sbjct  377  MGGSIALHEETVVGNIVSSPLK--GLNDIRDNSVLCVFYELPQYDYSHIAVLLPGVIDPE  434

Query  625  PALDNADI  632
              L   D+
Sbjct  435  KVLTPEDL  442



Lambda      K        H        a         alpha
   0.315    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050619744


Query= TCONS_00007695

Length=845
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:375377 pfam17846, XRN_M, Xrn1 helical domain. This helical do...  505     3e-173
CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus. Th...  106     2e-26 


>CDD:375377 pfam17846, XRN_M, Xrn1 helical domain.  This helical domain is 
part of the Xrn1 catalytic core. Xrn1 is a cytoplasmic 5'-3' 
exonuclease that degrades decapped mRNAs.
Length=442

 Score = 505 bits (1303),  Expect = 3e-173, Method: Composition-based stats.
 Identities = 205/548 (37%), Positives = 288/548 (53%), Gaps = 109/548 (20%)

Query  117  PFDLERALDDWVFMCFFVGNDFLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTEDGHV  176
             FD ER +DD+VFMCFFVGNDFLPHLPSL+IRE  ID L+ +++      GGYLT++G+V
Sbjct  1    QFDFERIIDDFVFMCFFVGNDFLPHLPSLEIREGAIDLLMTVYKKEFYKTGGYLTDNGYV  60

Query  177  DLKRAQLILQGLAKQEDAIFRRRRQAEERKLANEKRRKQEAKAREEERARKRRRSSPTYE  236
            +L R +L +  +   E+ IFR+R++ E+RK     RR++                     
Sbjct  61   NLDRVELFVSLVGTYEEKIFRKRQRREDRKRRRLARREE---------------------  99

Query  237  PMDSPVGHRAPRGGGDAAPPNQLELITPSRGELSRQTRELTHSMVVNRGAVYRANMANKS  296
                                                                + +  N  
Sbjct  100  --------------------------------------------------ASKEDDTNLE  109

Query  297  AAAVLKSKLMQGSQNGQNGEEKSEGATTNNDEPSQDQPDQTEQTSPSVLGKRKADLVEEE  356
            AA            N  N    S  A + N  PS +     E        K  ++L E+ 
Sbjct  110  AA------------NATNPSVGSHKAGSANATPSNESEASAE-------AKATSELREKN  150

Query  357  DTDAGTPGRDSPAVPVAAKEDELPPDTVRLWEEGYADRYYEQKFGV-DPQDKEFRHK-VA  414
              +      DS       + D    D VRL E G+ +RYY++KF V   +D EFR + V 
Sbjct  151  GKEL----DDS-------ESDGDGVDKVRLGEPGWKERYYKEKFSVKSTEDIEFRREDVV  199

Query  415  RAYAEGLAWVLLYYFQGCPSWTWYYPYHYAPFAADFVDIGDMEITFDKGVPFKPFEQLMG  474
            + Y EGL WVL YY+QGC SWTW+YPYHYAPFA+D  ++  ++I F+KG PFKPFEQLMG
Sbjct  200  QKYVEGLCWVLRYYYQGCCSWTWFYPYHYAPFASDLKNLAQLKIKFEKGQPFKPFEQLMG  259

Query  475  VLPASSNHAIPKVFHDLMSSPDSEIIDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLA  534
            V PA+S HA+PK +  LM+ PDS IIDFYPEDF +DLNGK++AWQGV LLPFIDEKRLL 
Sbjct  260  VFPAASKHALPKPYQALMTDPDSPIIDFYPEDFEIDLNGKRYAWQGVALLPFIDEKRLLE  319

Query  535  AMEKKYPLLTEDEKLRNSVGREVLLISEAHPLYQDLVANFYSKKQGVQKYKLNM-RISDG  593
            A+ K    LTE+E  RN+ G ++L +S+ HPL +  + + Y ++  V   K  +  +SDG
Sbjct  320  ALRKLENELTEEEVKRNTRGLDMLFVSKTHPLAESFIQSIYEQEDFV---KRAIDPLSDG  376

Query  594  LAGKVERNEAYIPHSSLPSSLEEYGMPSLEDDRSLTVNYEIPKSNHVHKSMLLRGVKFNP  653
            + G +  +E  +  + + S L+  G+  + D+  L V YE+P+ ++ H ++LL GV    
Sbjct  377  MGGSIALHEETVVGNIVSSPLK--GLNDIRDNSVLCVFYELPQYDYSHIAVLLPGVIDPE  434

Query  654  PALDNADI  661
              L   D+
Sbjct  435  KVLTPEDL  442


>CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus.  This family 
aligns residues towards the N-terminus of several proteins 
with multiple functions. The members of this family all appear 
to possess 5'-3' exonuclease activity EC:3.1.11.-. Thus, 
the aligned region may be necessary for 5' to 3' exonuclease 
function. The family also contains several Xrn1 and Xrn2 
proteins. The 5'-3' exoribonucleases Xrn1p and Xrn2p/Rat1p 
function in the degradation and processing of several classes 
of RNA in Saccharomyces cerevisiae. Xrn1p is the main enzyme 
catalyzing cytoplasmic mRNA degradation in multiple decay 
pathways, whereas Xrn2p/Rat1p functions in the processing of 
rRNAs and small nucleolar RNAs (snoRNAs) in the nucleus.
Length=231

 Score = 106 bits (267),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 33/42 (79%), Positives = 38/42 (90%), Gaps = 0/42 (0%)

Query  1    MEFIRSQRAAPEHDPNTRHVIYGLDADLIMLGLATHEPHFRV  42
            M+FIR QR+ P++DPNTRH IYGLDADLIMLGLATHEPHF +
Sbjct  190  MDFIRKQRSQPDYDPNTRHCIYGLDADLIMLGLATHEPHFSI  231



Lambda      K        H        a         alpha
   0.316    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1076635500


Query= TCONS_00002354

Length=845
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:375377 pfam17846, XRN_M, Xrn1 helical domain. This helical do...  505     3e-173
CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus. Th...  106     2e-26 


>CDD:375377 pfam17846, XRN_M, Xrn1 helical domain.  This helical domain is 
part of the Xrn1 catalytic core. Xrn1 is a cytoplasmic 5'-3' 
exonuclease that degrades decapped mRNAs.
Length=442

 Score = 505 bits (1303),  Expect = 3e-173, Method: Composition-based stats.
 Identities = 205/548 (37%), Positives = 288/548 (53%), Gaps = 109/548 (20%)

Query  117  PFDLERALDDWVFMCFFVGNDFLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTEDGHV  176
             FD ER +DD+VFMCFFVGNDFLPHLPSL+IRE  ID L+ +++      GGYLT++G+V
Sbjct  1    QFDFERIIDDFVFMCFFVGNDFLPHLPSLEIREGAIDLLMTVYKKEFYKTGGYLTDNGYV  60

Query  177  DLKRAQLILQGLAKQEDAIFRRRRQAEERKLANEKRRKQEAKAREEERARKRRRSSPTYE  236
            +L R +L +  +   E+ IFR+R++ E+RK     RR++                     
Sbjct  61   NLDRVELFVSLVGTYEEKIFRKRQRREDRKRRRLARREE---------------------  99

Query  237  PMDSPVGHRAPRGGGDAAPPNQLELITPSRGELSRQTRELTHSMVVNRGAVYRANMANKS  296
                                                                + +  N  
Sbjct  100  --------------------------------------------------ASKEDDTNLE  109

Query  297  AAAVLKSKLMQGSQNGQNGEEKSEGATTNNDEPSQDQPDQTEQTSPSVLGKRKADLVEEE  356
            AA            N  N    S  A + N  PS +     E        K  ++L E+ 
Sbjct  110  AA------------NATNPSVGSHKAGSANATPSNESEASAE-------AKATSELREKN  150

Query  357  DTDAGTPGRDSPAVPVAAKEDELPPDTVRLWEEGYADRYYEQKFGV-DPQDKEFRHK-VA  414
              +      DS       + D    D VRL E G+ +RYY++KF V   +D EFR + V 
Sbjct  151  GKEL----DDS-------ESDGDGVDKVRLGEPGWKERYYKEKFSVKSTEDIEFRREDVV  199

Query  415  RAYAEGLAWVLLYYFQGCPSWTWYYPYHYAPFAADFVDIGDMEITFDKGVPFKPFEQLMG  474
            + Y EGL WVL YY+QGC SWTW+YPYHYAPFA+D  ++  ++I F+KG PFKPFEQLMG
Sbjct  200  QKYVEGLCWVLRYYYQGCCSWTWFYPYHYAPFASDLKNLAQLKIKFEKGQPFKPFEQLMG  259

Query  475  VLPASSNHAIPKVFHDLMSSPDSEIIDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLA  534
            V PA+S HA+PK +  LM+ PDS IIDFYPEDF +DLNGK++AWQGV LLPFIDEKRLL 
Sbjct  260  VFPAASKHALPKPYQALMTDPDSPIIDFYPEDFEIDLNGKRYAWQGVALLPFIDEKRLLE  319

Query  535  AMEKKYPLLTEDEKLRNSVGREVLLISEAHPLYQDLVANFYSKKQGVQKYKLNM-RISDG  593
            A+ K    LTE+E  RN+ G ++L +S+ HPL +  + + Y ++  V   K  +  +SDG
Sbjct  320  ALRKLENELTEEEVKRNTRGLDMLFVSKTHPLAESFIQSIYEQEDFV---KRAIDPLSDG  376

Query  594  LAGKVERNEAYIPHSSLPSSLEEYGMPSLEDDRSLTVNYEIPKSNHVHKSMLLRGVKFNP  653
            + G +  +E  +  + + S L+  G+  + D+  L V YE+P+ ++ H ++LL GV    
Sbjct  377  MGGSIALHEETVVGNIVSSPLK--GLNDIRDNSVLCVFYELPQYDYSHIAVLLPGVIDPE  434

Query  654  PALDNADI  661
              L   D+
Sbjct  435  KVLTPEDL  442


>CDD:460832 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus.  This family 
aligns residues towards the N-terminus of several proteins 
with multiple functions. The members of this family all appear 
to possess 5'-3' exonuclease activity EC:3.1.11.-. Thus, 
the aligned region may be necessary for 5' to 3' exonuclease 
function. The family also contains several Xrn1 and Xrn2 
proteins. The 5'-3' exoribonucleases Xrn1p and Xrn2p/Rat1p 
function in the degradation and processing of several classes 
of RNA in Saccharomyces cerevisiae. Xrn1p is the main enzyme 
catalyzing cytoplasmic mRNA degradation in multiple decay 
pathways, whereas Xrn2p/Rat1p functions in the processing of 
rRNAs and small nucleolar RNAs (snoRNAs) in the nucleus.
Length=231

 Score = 106 bits (267),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 33/42 (79%), Positives = 38/42 (90%), Gaps = 0/42 (0%)

Query  1    MEFIRSQRAAPEHDPNTRHVIYGLDADLIMLGLATHEPHFRV  42
            M+FIR QR+ P++DPNTRH IYGLDADLIMLGLATHEPHF +
Sbjct  190  MDFIRKQRSQPDYDPNTRHCIYGLDADLIMLGLATHEPHFSI  231



Lambda      K        H        a         alpha
   0.316    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1076635500


Query= TCONS_00002355

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:375377 pfam17846, XRN_M, Xrn1 helical domain. This helical do...  472     2e-163


>CDD:375377 pfam17846, XRN_M, Xrn1 helical domain.  This helical domain is 
part of the Xrn1 catalytic core. Xrn1 is a cytoplasmic 5'-3' 
exonuclease that degrades decapped mRNAs.
Length=442

 Score = 472 bits (1216),  Expect = 2e-163, Method: Composition-based stats.
 Identities = 194/516 (38%), Positives = 271/516 (53%), Gaps = 109/516 (21%)

Query  88   PFDLERALDDWVFMCFFVGNDFLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTEDGHV  147
             FD ER +DD+VFMCFFVGNDFLPHLPSL+IRE  ID L+ +++      GGYLT++G+V
Sbjct  1    QFDFERIIDDFVFMCFFVGNDFLPHLPSLEIREGAIDLLMTVYKKEFYKTGGYLTDNGYV  60

Query  148  DLKRAQLILQGLAKQEDAIFRRRRQAEERKLANEKRRKQEAKAREEERARKRRRSSPTYE  207
            +L R +L +  +   E+ IFR+R++ E+RK     RR++ +                   
Sbjct  61   NLDRVELFVSLVGTYEEKIFRKRQRREDRKRRRLARREEAS-------------------  101

Query  208  PMDSPVGHRAPRGGGDAAPPNQLELITPSRGELSRQTRELTHSMVVNRGAVYRANMANKS  267
                                                                + +  N  
Sbjct  102  ----------------------------------------------------KEDDTNLE  109

Query  268  AAAVLKSKLMQGSQNGQNGEEKSEGATTNNDEPSQDQPDQTEQTSPSVLGKRKADLVEEE  327
            AA            N  N    S  A + N  PS +     E        K  ++L E+ 
Sbjct  110  AA------------NATNPSVGSHKAGSANATPSNESEASAE-------AKATSELREKN  150

Query  328  DTDAGTPGRDSPAVPVAAKEDELPPDTVRLWEEGYADRYYEQKFGV-DPQDKEFRHK-VA  385
              +      DS       + D    D VRL E G+ +RYY++KF V   +D EFR + V 
Sbjct  151  GKEL----DDS-------ESDGDGVDKVRLGEPGWKERYYKEKFSVKSTEDIEFRREDVV  199

Query  386  RAYAEGLAWVLLYYFQGCPSWTWYYPYHYAPFAADFVDIGDMEITFDKGVPFKPFEQLMG  445
            + Y EGL WVL YY+QGC SWTW+YPYHYAPFA+D  ++  ++I F+KG PFKPFEQLMG
Sbjct  200  QKYVEGLCWVLRYYYQGCCSWTWFYPYHYAPFASDLKNLAQLKIKFEKGQPFKPFEQLMG  259

Query  446  VLPASSNHAIPKVFHDLMSSPDSEIIDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLA  505
            V PA+S HA+PK +  LM+ PDS IIDFYPEDF +DLNGK++AWQGV LLPFIDEKRLL 
Sbjct  260  VFPAASKHALPKPYQALMTDPDSPIIDFYPEDFEIDLNGKRYAWQGVALLPFIDEKRLLE  319

Query  506  AMEKKYPLLTEDEKLRNSVGREVLLISEAHPLYQDLVANFYSKKQGVQKYKLNM-RISDG  564
            A+ K    LTE+E  RN+ G ++L +S+ HPL +  + + Y ++  V   K  +  +SDG
Sbjct  320  ALRKLENELTEEEVKRNTRGLDMLFVSKTHPLAESFIQSIYEQEDFV---KRAIDPLSDG  376

Query  565  LAGKVERNEAYIPHSSLPSSLEEYGMPSLEDDRSLT  600
            + G +  +E  +  + + S L+  G+  + D+  L 
Sbjct  377  MGGSIALHEETVVGNIVSSPLK--GLNDIRDNSVLC  410



Lambda      K        H        a         alpha
   0.317    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 759169424


Query= TCONS_00007696

Length=1605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase. Th...  391     6e-126
CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshik...  378     1e-118
CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  256     3e-78 
CDD:426122 pfam01202, SKI, Shikimate kinase                           168     1e-48 
CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...  116     2e-31 


>CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase.  The 3-dehydroquinate 
synthase EC:4.6.1.3 domain is present in isolation 
in various bacterial 3-dehydroquinate synthases and also 
present as a domain in the pentafunctional AROM polypeptide. 
3-dehydroquinate (DHQ) synthase catalyzes the formation of 
dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino 
heptulosonic 7 phosphate. This reaction is part of the shikimate 
pathway which is involved in the biosynthesis of aromatic 
amino acids.
Length=260

 Score = 391 bits (1007),  Expect = 6e-126, Method: Composition-based stats.
 Identities = 145/286 (51%), Positives = 176/286 (62%), Gaps = 28/286 (10%)

Query  74   IYNAPPGEVSKSRQTKADIEDWMLSQSPPCGRDTVVIALGGGVIGDLTGFVAATYMRGVR  133
                P GE SK+ +T   I D +L       R +++IALGGGVIGDL GFVAATYMRG+R
Sbjct  1    TIVIPDGEKSKTLETLERIYDALLEAG--LDRSSLLIALGGGVIGDLAGFVAATYMRGIR  58

Query  134  FVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPSRIYIDLEFLETLPVREFINGMA  193
            F+QVPTTLLA VDSS+GGKT I+ PLGKNLIGA +QP  + IDL+FL+TLP REF  G+A
Sbjct  59   FIQVPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDLDFLKTLPDREFRAGLA  118

Query  194  EVIKTAAISSEEEFTALEDNAETILSAVRREVKPGQRRFEGIEEILKARILASARHKAFV  253
            EVIK   I+  E F  LE+NAE +L+                 + L+  I  S   KA V
Sbjct  119  EVIKYGLIADAEFFEWLEENAEALLNL--------------DPDALEEAIARSCEVKADV  164

Query  254  VSADEREGGLRNLLNWGHSIGHAIEAILTP-QILHGECVAIGMVKEAELARHLGILKGVA  312
            V+ DE+E GLR LLN GH+ GHAIEA+     +LHGE VAIGMV  A L+  LG+L    
Sbjct  165  VAQDEKESGLRALLNLGHTFGHAIEALSGYGALLHGEAVAIGMVLAARLSERLGLLDEAD  224

Query  313  VARIVKCIAAYGLPTSLKDSRIRKLTAGKHCSVDQILFNMALDKKN  358
            V RI   +  YGLPTSL D             V+Q+L  MA DKK 
Sbjct  225  VERIRALLKKYGLPTSLPDL-----------DVEQLLAAMARDKKV  259


>CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase). 
 
Length=415

 Score = 378 bits (972),  Expect = 1e-118, Method: Composition-based stats.
 Identities = 166/428 (39%), Positives = 226/428 (53%), Gaps = 26/428 (6%)

Query  411  PPGSKSISNRALVLAALGSGTVRIKNLLHSDDTEVMLNALERLGAATFSWEEEGEVLVVN  470
             PGSKS S+RAL+LAAL +G   I NLL SDDT  ML AL  LGA     ++E  V++V 
Sbjct  12   IPGSKSNSHRALILAALAAGESTITNLLDSDDTLTMLEALRALGAEIIKLDDEKSVVIVE  71

Query  471  GKGGALQA-HPSPLYLGNAGTASRFLTTVATLATASSVDSSVLTGNNRMKQRPIGDLVDA  529
            G GG+ +A     L +GN+GTA R LT    L +       VL G+  + +RP+  L+DA
Sbjct  72   GLGGSFEAPEDLVLDMGNSGTALRPLTGRLALQSG----EVVLPGDCSIGKRPMDRLLDA  127

Query  530  LTANGAQIEYVENKGSLPLKIAASGGFTGGQINLAAKVSSQYVSSLLMCAP-YAKEPVTL  588
            L   GA+IE  E     PLK+    G   G I++   VSSQ+V+SLLM A   A+   T+
Sbjct  128  LRQLGAEIEGREGYNYAPLKVR---GLRLGGIHIDGDVSSQFVTSLLMLAALLAEGTTTI  184

Query  589  KLVGGKPISQPYIDMTTAMMRSFGIDVKKSTTEEHTYHIPQGRYINPAEYVVESDASSAT  648
            +       S+PYID T  M++ FG  ++ S TE         +     EY VE D SSA 
Sbjct  185  E----NLASEPYIDDTENMLKKFGAKIEGSGTELSITVKGGEKLP-GQEYRVEGDRSSAA  239

Query  649  YPLAIAAVTGTTCTIPNIGSKSLQGDARFAVDVLRPMGCTVEQTDTSTTVTGPADGVLRP  708
            Y L  AA+TG T T+ N+G  SLQGD    +++L  MG  + Q + +  V GP    LR 
Sbjct  240  YFLVAAAITGGTVTVENVGINSLQGD-EALLEILEKMGAEITQEEDADIVVGP--PGLRG  296

Query  709  LPNVDMEPMTDAFLGASVLAAIARGKDSNHTTRIYGIANQRVKECNRIKAMHDELAKFGV  768
               VD+    D     +VLAA A G     TTRI GI+  RVKE +R+ AM  EL + G 
Sbjct  297  KA-VDIRTAPDPAPTTAVLAAFAEG-----TTRIEGISELRVKETDRLFAMATELRRLGA  350

Query  769  VCREHDDGLEIDGIDRSTLRQPAGGVFCYDDHRVAFSFSVLSLIAPKPTLILEKECVGKT  828
               E  DGL I     +        V  Y DHR+A + ++  L+A   T+I + EC  ++
Sbjct  351  DVEELPDGLIIIP---AVKELKGAEVDSYGDHRIAMALALAGLVAEGETIIDDIECTDRS  407

Query  829  WPGWWDTL  836
            +P + + L
Sbjct  408  FPDFEEKL  415


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 256 bits (656),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 89/235 (38%), Positives = 141/235 (60%), Gaps = 14/235 (6%)

Query  1053  FVSLTLPDVRGADQILEQACVGSDAVELRVDLLEDPDSSNGIPTVDFVADQISYLRSRIT  1112
              V LT   +    + LE    G+D VELRVDLLE+P         + V++Q++ LR    
Sbjct  1     CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEPVED-----AEDVSEQLALLRRVGD  55

Query  1113  LPVIFTIRTKGQGGRFPDDAHAEAMQLYRLAVRSGCEFVDLEIAFPDEMLRAVTEMK--G  1170
             LP+IFT RTK +GG  PD +  E ++L RLA+R G ++VD+E+  P+E+L+ + E K  G
Sbjct  56    LPLIFTFRTKSEGGE-PDGSEEEYLELLRLALRLGVDYVDVELFLPEEILKELIEAKHEG  114

Query  1171  YSKIIASHHDPNGELSWANMSWMKYYNRALEYG-DVIKLVGVARNLDDNTALRKFKNWAE  1229
              +K+I S+HD  G  SW     +  Y +    G D++K+  +A++++D  AL +F +  +
Sbjct  115   GTKVIGSYHDFEGTPSWE--ELISRYEKMQALGADIVKIAVMAKSIEDVLALLRFTSEMK  172

Query  1230  EAHDVPLIAINMGGNGQLSRILNGFM-TPVSHPAL--PFRAAPGQLSATDIRKGL  1281
                D PLIA++MG  G++SR+L     +PV+  AL    ++APGQL+A ++R+ L
Sbjct  173   SLADKPLIAMSMGELGRISRVLGPIFGSPVTFAALGLAEKSAPGQLTAKELREAL  227


>CDD:426122 pfam01202, SKI, Shikimate kinase.  
Length=159

 Score = 168 bits (429),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)

Query  873   RGAGKTTSGHWVASTLKRPFIDLDDELERIEGMTIPDIIKQRGWQGFRDAELNLLQRTMK  932
              GAGK+T G  +A  L  PFID D+E+E+  GM+I +I ++ G +GFR  E  +L+  + 
Sbjct  1     MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLA  60

Query  933   ERPTGHVFACGGGVVEIPEARKLLIDWHKTKGNVLLIMRDIKQVMAFLNIDKTRPAYVED  992
             E   G V A GGG V   E R LL    K +G V+ +   ++ ++  L  DKTRP     
Sbjct  61    EH--GLVIATGGGAVLSEENRDLL----KERGIVIYLDAPLEVLLERLKRDKTRPLLQNK  114

Query  993   MLGVWLRRKPWFQECSNIQYYSQHAS-AGLPRASEDFARFIKFVT  1036
                  L    + +     +  +            E     ++ + 
Sbjct  115   DPEEELLELLFEERDPLYEEAADIVIDTDESSPEEVATEILEALE  159


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score = 116 bits (293),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 39/83 (47%), Positives = 52/83 (63%), Gaps = 2/83 (2%)

Query  1294  LFGSPISESRSPALHNTLFAEMGLPHEYTRLETA--NVEDVKDFIRAPDFGGASVTIPLK  1351
             + G+PIS S SPA+HN  F  +GL   Y   E    N+ D  + +RA  F G +VTIP K
Sbjct  1     VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  1352  LDIMPLLDEITAEAEIIGAVNTV  1374
                +PLLDE++ EA+ IGAVNT+
Sbjct  61    EAAIPLLDELSPEAKAIGAVNTI  83



Lambda      K        H        a         alpha
   0.319    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0789    0.140     1.90     42.6     43.6 

Effective search space used: 2043584772


Query= TCONS_00007697

Length=1578
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase. Th...  391     7e-126
CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshik...  377     1e-118
CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  256     3e-78 
CDD:426122 pfam01202, SKI, Shikimate kinase                           168     1e-48 
CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...  116     2e-31 


>CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase.  The 3-dehydroquinate 
synthase EC:4.6.1.3 domain is present in isolation 
in various bacterial 3-dehydroquinate synthases and also 
present as a domain in the pentafunctional AROM polypeptide. 
3-dehydroquinate (DHQ) synthase catalyzes the formation of 
dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino 
heptulosonic 7 phosphate. This reaction is part of the shikimate 
pathway which is involved in the biosynthesis of aromatic 
amino acids.
Length=260

 Score = 391 bits (1006),  Expect = 7e-126, Method: Composition-based stats.
 Identities = 145/286 (51%), Positives = 176/286 (62%), Gaps = 28/286 (10%)

Query  74   IYNAPPGEVSKSRQTKADIEDWMLSQSPPCGRDTVVIALGGGVIGDLTGFVAATYMRGVR  133
                P GE SK+ +T   I D +L       R +++IALGGGVIGDL GFVAATYMRG+R
Sbjct  1    TIVIPDGEKSKTLETLERIYDALLEAG--LDRSSLLIALGGGVIGDLAGFVAATYMRGIR  58

Query  134  FVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPSRIYIDLEFLETLPVREFINGMA  193
            F+QVPTTLLA VDSS+GGKT I+ PLGKNLIGA +QP  + IDL+FL+TLP REF  G+A
Sbjct  59   FIQVPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDLDFLKTLPDREFRAGLA  118

Query  194  EVIKTAAISSEEEFTALEDNAETILSAVRREVKPGQRRFEGIEEILKARILASARHKAFV  253
            EVIK   I+  E F  LE+NAE +L+                 + L+  I  S   KA V
Sbjct  119  EVIKYGLIADAEFFEWLEENAEALLNL--------------DPDALEEAIARSCEVKADV  164

Query  254  VSADEREGGLRNLLNWGHSIGHAIEAILTP-QILHGECVAIGMVKEAELARHLGILKGVA  312
            V+ DE+E GLR LLN GH+ GHAIEA+     +LHGE VAIGMV  A L+  LG+L    
Sbjct  165  VAQDEKESGLRALLNLGHTFGHAIEALSGYGALLHGEAVAIGMVLAARLSERLGLLDEAD  224

Query  313  VARIVKCIAAYGLPTSLKDSRIRKLTAGKHCSVDQILFNMALDKKN  358
            V RI   +  YGLPTSL D             V+Q+L  MA DKK 
Sbjct  225  VERIRALLKKYGLPTSLPDL-----------DVEQLLAAMARDKKV  259


>CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase). 
 
Length=415

 Score = 377 bits (971),  Expect = 1e-118, Method: Composition-based stats.
 Identities = 166/428 (39%), Positives = 226/428 (53%), Gaps = 26/428 (6%)

Query  411  PPGSKSISNRALVLAALGSGTVRIKNLLHSDDTEVMLNALERLGAATFSWEEEGEVLVVN  470
             PGSKS S+RAL+LAAL +G   I NLL SDDT  ML AL  LGA     ++E  V++V 
Sbjct  12   IPGSKSNSHRALILAALAAGESTITNLLDSDDTLTMLEALRALGAEIIKLDDEKSVVIVE  71

Query  471  GKGGALQA-HPSPLYLGNAGTASRFLTTVATLATASSVDSSVLTGNNRMKQRPIGDLVDA  529
            G GG+ +A     L +GN+GTA R LT    L +       VL G+  + +RP+  L+DA
Sbjct  72   GLGGSFEAPEDLVLDMGNSGTALRPLTGRLALQSG----EVVLPGDCSIGKRPMDRLLDA  127

Query  530  LTANGAQIEYVENKGSLPLKIAASGGFTGGQINLAAKVSSQYVSSLLMCAP-YAKEPVTL  588
            L   GA+IE  E     PLK+    G   G I++   VSSQ+V+SLLM A   A+   T+
Sbjct  128  LRQLGAEIEGREGYNYAPLKVR---GLRLGGIHIDGDVSSQFVTSLLMLAALLAEGTTTI  184

Query  589  KLVGGKPISQPYIDMTTAMMRSFGIDVKKSTTEEHTYHIPQGRYINPAEYVVESDASSAT  648
            +       S+PYID T  M++ FG  ++ S TE         +     EY VE D SSA 
Sbjct  185  E----NLASEPYIDDTENMLKKFGAKIEGSGTELSITVKGGEKLP-GQEYRVEGDRSSAA  239

Query  649  YPLAIAAVTGTTCTIPNIGSKSLQGDARFAVDVLRPMGCTVEQTDTSTTVTGPADGVLRP  708
            Y L  AA+TG T T+ N+G  SLQGD    +++L  MG  + Q + +  V GP    LR 
Sbjct  240  YFLVAAAITGGTVTVENVGINSLQGD-EALLEILEKMGAEITQEEDADIVVGP--PGLRG  296

Query  709  LPNVDMEPMTDAFLGASVLAAIARGKDSNHTTRIYGIANQRVKECNRIKAMHDELAKFGV  768
               VD+    D     +VLAA A G     TTRI GI+  RVKE +R+ AM  EL + G 
Sbjct  297  KA-VDIRTAPDPAPTTAVLAAFAEG-----TTRIEGISELRVKETDRLFAMATELRRLGA  350

Query  769  VCREHDDGLEIDGIDRSTLRQPAGGVFCYDDHRVAFSFSVLSLIAPKPTLILEKECVGKT  828
               E  DGL I     +        V  Y DHR+A + ++  L+A   T+I + EC  ++
Sbjct  351  DVEELPDGLIIIP---AVKELKGAEVDSYGDHRIAMALALAGLVAEGETIIDDIECTDRS  407

Query  829  WPGWWDTL  836
            +P + + L
Sbjct  408  FPDFEEKL  415


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 256 bits (656),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 89/235 (38%), Positives = 141/235 (60%), Gaps = 14/235 (6%)

Query  1053  FVSLTLPDVRGADQILEQACVGSDAVELRVDLLEDPDSSNGIPTVDFVADQISYLRSRIT  1112
              V LT   +    + LE    G+D VELRVDLLE+P         + V++Q++ LR    
Sbjct  1     CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEPVED-----AEDVSEQLALLRRVGD  55

Query  1113  LPVIFTIRTKGQGGRFPDDAHAEAMQLYRLAVRSGCEFVDLEIAFPDEMLRAVTEMK--G  1170
             LP+IFT RTK +GG  PD +  E ++L RLA+R G ++VD+E+  P+E+L+ + E K  G
Sbjct  56    LPLIFTFRTKSEGGE-PDGSEEEYLELLRLALRLGVDYVDVELFLPEEILKELIEAKHEG  114

Query  1171  YSKIIASHHDPNGELSWANMSWMKYYNRALEYG-DVIKLVGVARNLDDNTALRKFKNWAE  1229
              +K+I S+HD  G  SW     +  Y +    G D++K+  +A++++D  AL +F +  +
Sbjct  115   GTKVIGSYHDFEGTPSWE--ELISRYEKMQALGADIVKIAVMAKSIEDVLALLRFTSEMK  172

Query  1230  EAHDVPLIAINMGGNGQLSRILNGFM-TPVSHPAL--PFRAAPGQLSATDIRKGL  1281
                D PLIA++MG  G++SR+L     +PV+  AL    ++APGQL+A ++R+ L
Sbjct  173   SLADKPLIAMSMGELGRISRVLGPIFGSPVTFAALGLAEKSAPGQLTAKELREAL  227


>CDD:426122 pfam01202, SKI, Shikimate kinase.  
Length=159

 Score = 168 bits (429),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)

Query  873   RGAGKTTSGHWVASTLKRPFIDLDDELERIEGMTIPDIIKQRGWQGFRDAELNLLQRTMK  932
              GAGK+T G  +A  L  PFID D+E+E+  GM+I +I ++ G +GFR  E  +L+  + 
Sbjct  1     MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLA  60

Query  933   ERPTGHVFACGGGVVEIPEARKLLIDWHKTKGNVLLIMRDIKQVMAFLNIDKTRPAYVED  992
             E   G V A GGG V   E R LL    K +G V+ +   ++ ++  L  DKTRP     
Sbjct  61    EH--GLVIATGGGAVLSEENRDLL----KERGIVIYLDAPLEVLLERLKRDKTRPLLQNK  114

Query  993   MLGVWLRRKPWFQECSNIQYYSQHAS-AGLPRASEDFARFIKFVT  1036
                  L    + +     +  +            E     ++ + 
Sbjct  115   DPEEELLELLFEERDPLYEEAADIVIDTDESSPEEVATEILEALE  159


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score = 116 bits (293),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 39/83 (47%), Positives = 52/83 (63%), Gaps = 2/83 (2%)

Query  1294  LFGSPISESRSPALHNTLFAEMGLPHEYTRLETA--NVEDVKDFIRAPDFGGASVTIPLK  1351
             + G+PIS S SPA+HN  F  +GL   Y   E    N+ D  + +RA  F G +VTIP K
Sbjct  1     VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  1352  LDIMPLLDEITAEAEIIGAVNTV  1374
                +PLLDE++ EA+ IGAVNT+
Sbjct  61    EAAIPLLDELSPEAKAIGAVNTI  83



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2006946798


Query= TCONS_00002356

Length=1594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase. Th...  391     9e-126
CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshik...  377     2e-118
CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  256     3e-78 
CDD:426122 pfam01202, SKI, Shikimate kinase                           168     1e-48 
CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...  116     2e-31 


>CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase.  The 3-dehydroquinate 
synthase EC:4.6.1.3 domain is present in isolation 
in various bacterial 3-dehydroquinate synthases and also 
present as a domain in the pentafunctional AROM polypeptide. 
3-dehydroquinate (DHQ) synthase catalyzes the formation of 
dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino 
heptulosonic 7 phosphate. This reaction is part of the shikimate 
pathway which is involved in the biosynthesis of aromatic 
amino acids.
Length=260

 Score = 391 bits (1006),  Expect = 9e-126, Method: Composition-based stats.
 Identities = 145/286 (51%), Positives = 176/286 (62%), Gaps = 28/286 (10%)

Query  74   IYNAPPGEVSKSRQTKADIEDWMLSQSPPCGRDTVVIALGGGVIGDLTGFVAATYMRGVR  133
                P GE SK+ +T   I D +L       R +++IALGGGVIGDL GFVAATYMRG+R
Sbjct  1    TIVIPDGEKSKTLETLERIYDALLEAG--LDRSSLLIALGGGVIGDLAGFVAATYMRGIR  58

Query  134  FVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPSRIYIDLEFLETLPVREFINGMA  193
            F+QVPTTLLA VDSS+GGKT I+ PLGKNLIGA +QP  + IDL+FL+TLP REF  G+A
Sbjct  59   FIQVPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDLDFLKTLPDREFRAGLA  118

Query  194  EVIKTAAISSEEEFTALEDNAETILSAVRREVKPGQRRFEGIEEILKARILASARHKAFV  253
            EVIK   I+  E F  LE+NAE +L+                 + L+  I  S   KA V
Sbjct  119  EVIKYGLIADAEFFEWLEENAEALLNL--------------DPDALEEAIARSCEVKADV  164

Query  254  VSADEREGGLRNLLNWGHSIGHAIEAILTP-QILHGECVAIGMVKEAELARHLGILKGVA  312
            V+ DE+E GLR LLN GH+ GHAIEA+     +LHGE VAIGMV  A L+  LG+L    
Sbjct  165  VAQDEKESGLRALLNLGHTFGHAIEALSGYGALLHGEAVAIGMVLAARLSERLGLLDEAD  224

Query  313  VARIVKCIAAYGLPTSLKDSRIRKLTAGKHCSVDQILFNMALDKKN  358
            V RI   +  YGLPTSL D             V+Q+L  MA DKK 
Sbjct  225  VERIRALLKKYGLPTSLPDL-----------DVEQLLAAMARDKKV  259


>CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase). 
 
Length=415

 Score = 377 bits (970),  Expect = 2e-118, Method: Composition-based stats.
 Identities = 166/428 (39%), Positives = 226/428 (53%), Gaps = 26/428 (6%)

Query  411  PPGSKSISNRALVLAALGSGTVRIKNLLHSDDTEVMLNALERLGAATFSWEEEGEVLVVN  470
             PGSKS S+RAL+LAAL +G   I NLL SDDT  ML AL  LGA     ++E  V++V 
Sbjct  12   IPGSKSNSHRALILAALAAGESTITNLLDSDDTLTMLEALRALGAEIIKLDDEKSVVIVE  71

Query  471  GKGGALQA-HPSPLYLGNAGTASRFLTTVATLATASSVDSSVLTGNNRMKQRPIGDLVDA  529
            G GG+ +A     L +GN+GTA R LT    L +       VL G+  + +RP+  L+DA
Sbjct  72   GLGGSFEAPEDLVLDMGNSGTALRPLTGRLALQSG----EVVLPGDCSIGKRPMDRLLDA  127

Query  530  LTANGAQIEYVENKGSLPLKIAASGGFTGGQINLAAKVSSQYVSSLLMCAP-YAKEPVTL  588
            L   GA+IE  E     PLK+    G   G I++   VSSQ+V+SLLM A   A+   T+
Sbjct  128  LRQLGAEIEGREGYNYAPLKVR---GLRLGGIHIDGDVSSQFVTSLLMLAALLAEGTTTI  184

Query  589  KLVGGKPISQPYIDMTTAMMRSFGIDVKKSTTEEHTYHIPQGRYINPAEYVVESDASSAT  648
            +       S+PYID T  M++ FG  ++ S TE         +     EY VE D SSA 
Sbjct  185  E----NLASEPYIDDTENMLKKFGAKIEGSGTELSITVKGGEKLP-GQEYRVEGDRSSAA  239

Query  649  YPLAIAAVTGTTCTIPNIGSKSLQGDARFAVDVLRPMGCTVEQTDTSTTVTGPADGVLRP  708
            Y L  AA+TG T T+ N+G  SLQGD    +++L  MG  + Q + +  V GP    LR 
Sbjct  240  YFLVAAAITGGTVTVENVGINSLQGD-EALLEILEKMGAEITQEEDADIVVGP--PGLRG  296

Query  709  LPNVDMEPMTDAFLGASVLAAIARGKDSNHTTRIYGIANQRVKECNRIKAMHDELAKFGV  768
               VD+    D     +VLAA A G     TTRI GI+  RVKE +R+ AM  EL + G 
Sbjct  297  KA-VDIRTAPDPAPTTAVLAAFAEG-----TTRIEGISELRVKETDRLFAMATELRRLGA  350

Query  769  VCREHDDGLEIDGIDRSTLRQPAGGVFCYDDHRVAFSFSVLSLIAPKPTLILEKECVGKT  828
               E  DGL I     +        V  Y DHR+A + ++  L+A   T+I + EC  ++
Sbjct  351  DVEELPDGLIIIP---AVKELKGAEVDSYGDHRIAMALALAGLVAEGETIIDDIECTDRS  407

Query  829  WPGWWDTL  836
            +P + + L
Sbjct  408  FPDFEEKL  415


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 256 bits (656),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 89/235 (38%), Positives = 141/235 (60%), Gaps = 14/235 (6%)

Query  1053  FVSLTLPDVRGADQILEQACVGSDAVELRVDLLEDPDSSNGIPTVDFVADQISYLRSRIT  1112
              V LT   +    + LE    G+D VELRVDLLE+P         + V++Q++ LR    
Sbjct  1     CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEPVED-----AEDVSEQLALLRRVGD  55

Query  1113  LPVIFTIRTKGQGGRFPDDAHAEAMQLYRLAVRSGCEFVDLEIAFPDEMLRAVTEMK--G  1170
             LP+IFT RTK +GG  PD +  E ++L RLA+R G ++VD+E+  P+E+L+ + E K  G
Sbjct  56    LPLIFTFRTKSEGGE-PDGSEEEYLELLRLALRLGVDYVDVELFLPEEILKELIEAKHEG  114

Query  1171  YSKIIASHHDPNGELSWANMSWMKYYNRALEYG-DVIKLVGVARNLDDNTALRKFKNWAE  1229
              +K+I S+HD  G  SW     +  Y +    G D++K+  +A++++D  AL +F +  +
Sbjct  115   GTKVIGSYHDFEGTPSWE--ELISRYEKMQALGADIVKIAVMAKSIEDVLALLRFTSEMK  172

Query  1230  EAHDVPLIAINMGGNGQLSRILNGFM-TPVSHPAL--PFRAAPGQLSATDIRKGL  1281
                D PLIA++MG  G++SR+L     +PV+  AL    ++APGQL+A ++R+ L
Sbjct  173   SLADKPLIAMSMGELGRISRVLGPIFGSPVTFAALGLAEKSAPGQLTAKELREAL  227


>CDD:426122 pfam01202, SKI, Shikimate kinase.  
Length=159

 Score = 168 bits (428),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)

Query  873   RGAGKTTSGHWVASTLKRPFIDLDDELERIEGMTIPDIIKQRGWQGFRDAELNLLQRTMK  932
              GAGK+T G  +A  L  PFID D+E+E+  GM+I +I ++ G +GFR  E  +L+  + 
Sbjct  1     MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLA  60

Query  933   ERPTGHVFACGGGVVEIPEARKLLIDWHKTKGNVLLIMRDIKQVMAFLNIDKTRPAYVED  992
             E   G V A GGG V   E R LL    K +G V+ +   ++ ++  L  DKTRP     
Sbjct  61    EH--GLVIATGGGAVLSEENRDLL----KERGIVIYLDAPLEVLLERLKRDKTRPLLQNK  114

Query  993   MLGVWLRRKPWFQECSNIQYYSQHAS-AGLPRASEDFARFIKFVT  1036
                  L    + +     +  +            E     ++ + 
Sbjct  115   DPEEELLELLFEERDPLYEEAADIVIDTDESSPEEVATEILEALE  159


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score = 116 bits (293),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 39/83 (47%), Positives = 52/83 (63%), Gaps = 2/83 (2%)

Query  1294  LFGSPISESRSPALHNTLFAEMGLPHEYTRLETA--NVEDVKDFIRAPDFGGASVTIPLK  1351
             + G+PIS S SPA+HN  F  +GL   Y   E    N+ D  + +RA  F G +VTIP K
Sbjct  1     VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  1352  LDIMPLLDEITAEAEIIGAVNTV  1374
                +PLLDE++ EA+ IGAVNT+
Sbjct  61    EAAIPLLDELSPEAKAIGAVNTI  83



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2028658190


Query= TCONS_00002357

Length=1578
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase. Th...  391     7e-126
CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshik...  377     1e-118
CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  256     3e-78 
CDD:426122 pfam01202, SKI, Shikimate kinase                           168     1e-48 
CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...  116     2e-31 


>CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase.  The 3-dehydroquinate 
synthase EC:4.6.1.3 domain is present in isolation 
in various bacterial 3-dehydroquinate synthases and also 
present as a domain in the pentafunctional AROM polypeptide. 
3-dehydroquinate (DHQ) synthase catalyzes the formation of 
dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino 
heptulosonic 7 phosphate. This reaction is part of the shikimate 
pathway which is involved in the biosynthesis of aromatic 
amino acids.
Length=260

 Score = 391 bits (1006),  Expect = 7e-126, Method: Composition-based stats.
 Identities = 145/286 (51%), Positives = 176/286 (62%), Gaps = 28/286 (10%)

Query  74   IYNAPPGEVSKSRQTKADIEDWMLSQSPPCGRDTVVIALGGGVIGDLTGFVAATYMRGVR  133
                P GE SK+ +T   I D +L       R +++IALGGGVIGDL GFVAATYMRG+R
Sbjct  1    TIVIPDGEKSKTLETLERIYDALLEAG--LDRSSLLIALGGGVIGDLAGFVAATYMRGIR  58

Query  134  FVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPSRIYIDLEFLETLPVREFINGMA  193
            F+QVPTTLLA VDSS+GGKT I+ PLGKNLIGA +QP  + IDL+FL+TLP REF  G+A
Sbjct  59   FIQVPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDLDFLKTLPDREFRAGLA  118

Query  194  EVIKTAAISSEEEFTALEDNAETILSAVRREVKPGQRRFEGIEEILKARILASARHKAFV  253
            EVIK   I+  E F  LE+NAE +L+                 + L+  I  S   KA V
Sbjct  119  EVIKYGLIADAEFFEWLEENAEALLNL--------------DPDALEEAIARSCEVKADV  164

Query  254  VSADEREGGLRNLLNWGHSIGHAIEAILTP-QILHGECVAIGMVKEAELARHLGILKGVA  312
            V+ DE+E GLR LLN GH+ GHAIEA+     +LHGE VAIGMV  A L+  LG+L    
Sbjct  165  VAQDEKESGLRALLNLGHTFGHAIEALSGYGALLHGEAVAIGMVLAARLSERLGLLDEAD  224

Query  313  VARIVKCIAAYGLPTSLKDSRIRKLTAGKHCSVDQILFNMALDKKN  358
            V RI   +  YGLPTSL D             V+Q+L  MA DKK 
Sbjct  225  VERIRALLKKYGLPTSLPDL-----------DVEQLLAAMARDKKV  259


>CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase). 
 
Length=415

 Score = 377 bits (971),  Expect = 1e-118, Method: Composition-based stats.
 Identities = 166/428 (39%), Positives = 226/428 (53%), Gaps = 26/428 (6%)

Query  411  PPGSKSISNRALVLAALGSGTVRIKNLLHSDDTEVMLNALERLGAATFSWEEEGEVLVVN  470
             PGSKS S+RAL+LAAL +G   I NLL SDDT  ML AL  LGA     ++E  V++V 
Sbjct  12   IPGSKSNSHRALILAALAAGESTITNLLDSDDTLTMLEALRALGAEIIKLDDEKSVVIVE  71

Query  471  GKGGALQA-HPSPLYLGNAGTASRFLTTVATLATASSVDSSVLTGNNRMKQRPIGDLVDA  529
            G GG+ +A     L +GN+GTA R LT    L +       VL G+  + +RP+  L+DA
Sbjct  72   GLGGSFEAPEDLVLDMGNSGTALRPLTGRLALQSG----EVVLPGDCSIGKRPMDRLLDA  127

Query  530  LTANGAQIEYVENKGSLPLKIAASGGFTGGQINLAAKVSSQYVSSLLMCAP-YAKEPVTL  588
            L   GA+IE  E     PLK+    G   G I++   VSSQ+V+SLLM A   A+   T+
Sbjct  128  LRQLGAEIEGREGYNYAPLKVR---GLRLGGIHIDGDVSSQFVTSLLMLAALLAEGTTTI  184

Query  589  KLVGGKPISQPYIDMTTAMMRSFGIDVKKSTTEEHTYHIPQGRYINPAEYVVESDASSAT  648
            +       S+PYID T  M++ FG  ++ S TE         +     EY VE D SSA 
Sbjct  185  E----NLASEPYIDDTENMLKKFGAKIEGSGTELSITVKGGEKLP-GQEYRVEGDRSSAA  239

Query  649  YPLAIAAVTGTTCTIPNIGSKSLQGDARFAVDVLRPMGCTVEQTDTSTTVTGPADGVLRP  708
            Y L  AA+TG T T+ N+G  SLQGD    +++L  MG  + Q + +  V GP    LR 
Sbjct  240  YFLVAAAITGGTVTVENVGINSLQGD-EALLEILEKMGAEITQEEDADIVVGP--PGLRG  296

Query  709  LPNVDMEPMTDAFLGASVLAAIARGKDSNHTTRIYGIANQRVKECNRIKAMHDELAKFGV  768
               VD+    D     +VLAA A G     TTRI GI+  RVKE +R+ AM  EL + G 
Sbjct  297  KA-VDIRTAPDPAPTTAVLAAFAEG-----TTRIEGISELRVKETDRLFAMATELRRLGA  350

Query  769  VCREHDDGLEIDGIDRSTLRQPAGGVFCYDDHRVAFSFSVLSLIAPKPTLILEKECVGKT  828
               E  DGL I     +        V  Y DHR+A + ++  L+A   T+I + EC  ++
Sbjct  351  DVEELPDGLIIIP---AVKELKGAEVDSYGDHRIAMALALAGLVAEGETIIDDIECTDRS  407

Query  829  WPGWWDTL  836
            +P + + L
Sbjct  408  FPDFEEKL  415


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 256 bits (656),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 89/235 (38%), Positives = 141/235 (60%), Gaps = 14/235 (6%)

Query  1053  FVSLTLPDVRGADQILEQACVGSDAVELRVDLLEDPDSSNGIPTVDFVADQISYLRSRIT  1112
              V LT   +    + LE    G+D VELRVDLLE+P         + V++Q++ LR    
Sbjct  1     CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEPVED-----AEDVSEQLALLRRVGD  55

Query  1113  LPVIFTIRTKGQGGRFPDDAHAEAMQLYRLAVRSGCEFVDLEIAFPDEMLRAVTEMK--G  1170
             LP+IFT RTK +GG  PD +  E ++L RLA+R G ++VD+E+  P+E+L+ + E K  G
Sbjct  56    LPLIFTFRTKSEGGE-PDGSEEEYLELLRLALRLGVDYVDVELFLPEEILKELIEAKHEG  114

Query  1171  YSKIIASHHDPNGELSWANMSWMKYYNRALEYG-DVIKLVGVARNLDDNTALRKFKNWAE  1229
              +K+I S+HD  G  SW     +  Y +    G D++K+  +A++++D  AL +F +  +
Sbjct  115   GTKVIGSYHDFEGTPSWE--ELISRYEKMQALGADIVKIAVMAKSIEDVLALLRFTSEMK  172

Query  1230  EAHDVPLIAINMGGNGQLSRILNGFM-TPVSHPAL--PFRAAPGQLSATDIRKGL  1281
                D PLIA++MG  G++SR+L     +PV+  AL    ++APGQL+A ++R+ L
Sbjct  173   SLADKPLIAMSMGELGRISRVLGPIFGSPVTFAALGLAEKSAPGQLTAKELREAL  227


>CDD:426122 pfam01202, SKI, Shikimate kinase.  
Length=159

 Score = 168 bits (429),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)

Query  873   RGAGKTTSGHWVASTLKRPFIDLDDELERIEGMTIPDIIKQRGWQGFRDAELNLLQRTMK  932
              GAGK+T G  +A  L  PFID D+E+E+  GM+I +I ++ G +GFR  E  +L+  + 
Sbjct  1     MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLA  60

Query  933   ERPTGHVFACGGGVVEIPEARKLLIDWHKTKGNVLLIMRDIKQVMAFLNIDKTRPAYVED  992
             E   G V A GGG V   E R LL    K +G V+ +   ++ ++  L  DKTRP     
Sbjct  61    EH--GLVIATGGGAVLSEENRDLL----KERGIVIYLDAPLEVLLERLKRDKTRPLLQNK  114

Query  993   MLGVWLRRKPWFQECSNIQYYSQHAS-AGLPRASEDFARFIKFVT  1036
                  L    + +     +  +            E     ++ + 
Sbjct  115   DPEEELLELLFEERDPLYEEAADIVIDTDESSPEEVATEILEALE  159


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score = 116 bits (293),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 39/83 (47%), Positives = 52/83 (63%), Gaps = 2/83 (2%)

Query  1294  LFGSPISESRSPALHNTLFAEMGLPHEYTRLETA--NVEDVKDFIRAPDFGGASVTIPLK  1351
             + G+PIS S SPA+HN  F  +GL   Y   E    N+ D  + +RA  F G +VTIP K
Sbjct  1     VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  1352  LDIMPLLDEITAEAEIIGAVNTV  1374
                +PLLDE++ EA+ IGAVNT+
Sbjct  61    EAAIPLLDELSPEAKAIGAVNTI  83



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2006946798


Query= TCONS_00002358

Length=1589
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase. Th...  391     5e-126
CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshik...  378     8e-119
CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  256     2e-78 
CDD:426122 pfam01202, SKI, Shikimate kinase                           168     1e-48 
CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...  116     2e-31 


>CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase.  The 3-dehydroquinate 
synthase EC:4.6.1.3 domain is present in isolation 
in various bacterial 3-dehydroquinate synthases and also 
present as a domain in the pentafunctional AROM polypeptide. 
3-dehydroquinate (DHQ) synthase catalyzes the formation of 
dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino 
heptulosonic 7 phosphate. This reaction is part of the shikimate 
pathway which is involved in the biosynthesis of aromatic 
amino acids.
Length=260

 Score = 391 bits (1008),  Expect = 5e-126, Method: Composition-based stats.
 Identities = 145/286 (51%), Positives = 176/286 (62%), Gaps = 28/286 (10%)

Query  74   IYNAPPGEVSKSRQTKADIEDWMLSQSPPCGRDTVVIALGGGVIGDLTGFVAATYMRGVR  133
                P GE SK+ +T   I D +L       R +++IALGGGVIGDL GFVAATYMRG+R
Sbjct  1    TIVIPDGEKSKTLETLERIYDALLEAG--LDRSSLLIALGGGVIGDLAGFVAATYMRGIR  58

Query  134  FVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPSRIYIDLEFLETLPVREFINGMA  193
            F+QVPTTLLA VDSS+GGKT I+ PLGKNLIGA +QP  + IDL+FL+TLP REF  G+A
Sbjct  59   FIQVPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDLDFLKTLPDREFRAGLA  118

Query  194  EVIKTAAISSEEEFTALEDNAETILSAVRREVKPGQRRFEGIEEILKARILASARHKAFV  253
            EVIK   I+  E F  LE+NAE +L+                 + L+  I  S   KA V
Sbjct  119  EVIKYGLIADAEFFEWLEENAEALLNL--------------DPDALEEAIARSCEVKADV  164

Query  254  VSADEREGGLRNLLNWGHSIGHAIEAILTP-QILHGECVAIGMVKEAELARHLGILKGVA  312
            V+ DE+E GLR LLN GH+ GHAIEA+     +LHGE VAIGMV  A L+  LG+L    
Sbjct  165  VAQDEKESGLRALLNLGHTFGHAIEALSGYGALLHGEAVAIGMVLAARLSERLGLLDEAD  224

Query  313  VARIVKCIAAYGLPTSLKDSRIRKLTAGKHCSVDQILFNMALDKKN  358
            V RI   +  YGLPTSL D             V+Q+L  MA DKK 
Sbjct  225  VERIRALLKKYGLPTSLPDL-----------DVEQLLAAMARDKKV  259


>CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase). 
 
Length=415

 Score = 378 bits (972),  Expect = 8e-119, Method: Composition-based stats.
 Identities = 166/428 (39%), Positives = 226/428 (53%), Gaps = 26/428 (6%)

Query  411  PPGSKSISNRALVLAALGSGTVRIKNLLHSDDTEVMLNALERLGAATFSWEEEGEVLVVN  470
             PGSKS S+RAL+LAAL +G   I NLL SDDT  ML AL  LGA     ++E  V++V 
Sbjct  12   IPGSKSNSHRALILAALAAGESTITNLLDSDDTLTMLEALRALGAEIIKLDDEKSVVIVE  71

Query  471  GKGGALQA-HPSPLYLGNAGTASRFLTTVATLATASSVDSSVLTGNNRMKQRPIGDLVDA  529
            G GG+ +A     L +GN+GTA R LT    L +       VL G+  + +RP+  L+DA
Sbjct  72   GLGGSFEAPEDLVLDMGNSGTALRPLTGRLALQSG----EVVLPGDCSIGKRPMDRLLDA  127

Query  530  LTANGAQIEYVENKGSLPLKIAASGGFTGGQINLAAKVSSQYVSSLLMCAP-YAKEPVTL  588
            L   GA+IE  E     PLK+    G   G I++   VSSQ+V+SLLM A   A+   T+
Sbjct  128  LRQLGAEIEGREGYNYAPLKVR---GLRLGGIHIDGDVSSQFVTSLLMLAALLAEGTTTI  184

Query  589  KLVGGKPISQPYIDMTTAMMRSFGIDVKKSTTEEHTYHIPQGRYINPAEYVVESDASSAT  648
            +       S+PYID T  M++ FG  ++ S TE         +     EY VE D SSA 
Sbjct  185  E----NLASEPYIDDTENMLKKFGAKIEGSGTELSITVKGGEKLP-GQEYRVEGDRSSAA  239

Query  649  YPLAIAAVTGTTCTIPNIGSKSLQGDARFAVDVLRPMGCTVEQTDTSTTVTGPADGVLRP  708
            Y L  AA+TG T T+ N+G  SLQGD    +++L  MG  + Q + +  V GP    LR 
Sbjct  240  YFLVAAAITGGTVTVENVGINSLQGD-EALLEILEKMGAEITQEEDADIVVGP--PGLRG  296

Query  709  LPNVDMEPMTDAFLGASVLAAIARGKDSNHTTRIYGIANQRVKECNRIKAMHDELAKFGV  768
               VD+    D     +VLAA A G     TTRI GI+  RVKE +R+ AM  EL + G 
Sbjct  297  KA-VDIRTAPDPAPTTAVLAAFAEG-----TTRIEGISELRVKETDRLFAMATELRRLGA  350

Query  769  VCREHDDGLEIDGIDRSTLRQPAGGVFCYDDHRVAFSFSVLSLIAPKPTLILEKECVGKT  828
               E  DGL I     +        V  Y DHR+A + ++  L+A   T+I + EC  ++
Sbjct  351  DVEELPDGLIIIP---AVKELKGAEVDSYGDHRIAMALALAGLVAEGETIIDDIECTDRS  407

Query  829  WPGWWDTL  836
            +P + + L
Sbjct  408  FPDFEEKL  415


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 256 bits (657),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 89/235 (38%), Positives = 141/235 (60%), Gaps = 14/235 (6%)

Query  1053  FVSLTLPDVRGADQILEQACVGSDAVELRVDLLEDPDSSNGIPTVDFVADQISYLRSRIT  1112
              V LT   +    + LE    G+D VELRVDLLE+P         + V++Q++ LR    
Sbjct  1     CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEPVED-----AEDVSEQLALLRRVGD  55

Query  1113  LPVIFTIRTKGQGGRFPDDAHAEAMQLYRLAVRSGCEFVDLEIAFPDEMLRAVTEMK--G  1170
             LP+IFT RTK +GG  PD +  E ++L RLA+R G ++VD+E+  P+E+L+ + E K  G
Sbjct  56    LPLIFTFRTKSEGGE-PDGSEEEYLELLRLALRLGVDYVDVELFLPEEILKELIEAKHEG  114

Query  1171  YSKIIASHHDPNGELSWANMSWMKYYNRALEYG-DVIKLVGVARNLDDNTALRKFKNWAE  1229
              +K+I S+HD  G  SW     +  Y +    G D++K+  +A++++D  AL +F +  +
Sbjct  115   GTKVIGSYHDFEGTPSWE--ELISRYEKMQALGADIVKIAVMAKSIEDVLALLRFTSEMK  172

Query  1230  EAHDVPLIAINMGGNGQLSRILNGFM-TPVSHPAL--PFRAAPGQLSATDIRKGL  1281
                D PLIA++MG  G++SR+L     +PV+  AL    ++APGQL+A ++R+ L
Sbjct  173   SLADKPLIAMSMGELGRISRVLGPIFGSPVTFAALGLAEKSAPGQLTAKELREAL  227


>CDD:426122 pfam01202, SKI, Shikimate kinase.  
Length=159

 Score = 168 bits (429),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)

Query  873   RGAGKTTSGHWVASTLKRPFIDLDDELERIEGMTIPDIIKQRGWQGFRDAELNLLQRTMK  932
              GAGK+T G  +A  L  PFID D+E+E+  GM+I +I ++ G +GFR  E  +L+  + 
Sbjct  1     MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLA  60

Query  933   ERPTGHVFACGGGVVEIPEARKLLIDWHKTKGNVLLIMRDIKQVMAFLNIDKTRPAYVED  992
             E   G V A GGG V   E R LL    K +G V+ +   ++ ++  L  DKTRP     
Sbjct  61    EH--GLVIATGGGAVLSEENRDLL----KERGIVIYLDAPLEVLLERLKRDKTRPLLQNK  114

Query  993   MLGVWLRRKPWFQECSNIQYYSQHAS-AGLPRASEDFARFIKFVT  1036
                  L    + +     +  +            E     ++ + 
Sbjct  115   DPEEELLELLFEERDPLYEEAADIVIDTDESSPEEVATEILEALE  159


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score = 116 bits (293),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 39/83 (47%), Positives = 52/83 (63%), Gaps = 2/83 (2%)

Query  1294  LFGSPISESRSPALHNTLFAEMGLPHEYTRLETA--NVEDVKDFIRAPDFGGASVTIPLK  1351
             + G+PIS S SPA+HN  F  +GL   Y   E    N+ D  + +RA  F G +VTIP K
Sbjct  1     VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  1352  LDIMPLLDEITAEAEIIGAVNTV  1374
                +PLLDE++ EA+ IGAVNT+
Sbjct  61    EAAIPLLDELSPEAKAIGAVNTI  83



Lambda      K        H        a         alpha
   0.318    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2021873380


Query= TCONS_00002359

Length=1578
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase. Th...  391     7e-126
CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshik...  377     1e-118
CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  256     3e-78 
CDD:426122 pfam01202, SKI, Shikimate kinase                           168     1e-48 
CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...  116     2e-31 


>CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase.  The 3-dehydroquinate 
synthase EC:4.6.1.3 domain is present in isolation 
in various bacterial 3-dehydroquinate synthases and also 
present as a domain in the pentafunctional AROM polypeptide. 
3-dehydroquinate (DHQ) synthase catalyzes the formation of 
dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino 
heptulosonic 7 phosphate. This reaction is part of the shikimate 
pathway which is involved in the biosynthesis of aromatic 
amino acids.
Length=260

 Score = 391 bits (1006),  Expect = 7e-126, Method: Composition-based stats.
 Identities = 145/286 (51%), Positives = 176/286 (62%), Gaps = 28/286 (10%)

Query  74   IYNAPPGEVSKSRQTKADIEDWMLSQSPPCGRDTVVIALGGGVIGDLTGFVAATYMRGVR  133
                P GE SK+ +T   I D +L       R +++IALGGGVIGDL GFVAATYMRG+R
Sbjct  1    TIVIPDGEKSKTLETLERIYDALLEAG--LDRSSLLIALGGGVIGDLAGFVAATYMRGIR  58

Query  134  FVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPSRIYIDLEFLETLPVREFINGMA  193
            F+QVPTTLLA VDSS+GGKT I+ PLGKNLIGA +QP  + IDL+FL+TLP REF  G+A
Sbjct  59   FIQVPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDLDFLKTLPDREFRAGLA  118

Query  194  EVIKTAAISSEEEFTALEDNAETILSAVRREVKPGQRRFEGIEEILKARILASARHKAFV  253
            EVIK   I+  E F  LE+NAE +L+                 + L+  I  S   KA V
Sbjct  119  EVIKYGLIADAEFFEWLEENAEALLNL--------------DPDALEEAIARSCEVKADV  164

Query  254  VSADEREGGLRNLLNWGHSIGHAIEAILTP-QILHGECVAIGMVKEAELARHLGILKGVA  312
            V+ DE+E GLR LLN GH+ GHAIEA+     +LHGE VAIGMV  A L+  LG+L    
Sbjct  165  VAQDEKESGLRALLNLGHTFGHAIEALSGYGALLHGEAVAIGMVLAARLSERLGLLDEAD  224

Query  313  VARIVKCIAAYGLPTSLKDSRIRKLTAGKHCSVDQILFNMALDKKN  358
            V RI   +  YGLPTSL D             V+Q+L  MA DKK 
Sbjct  225  VERIRALLKKYGLPTSLPDL-----------DVEQLLAAMARDKKV  259


>CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase). 
 
Length=415

 Score = 377 bits (971),  Expect = 1e-118, Method: Composition-based stats.
 Identities = 166/428 (39%), Positives = 226/428 (53%), Gaps = 26/428 (6%)

Query  411  PPGSKSISNRALVLAALGSGTVRIKNLLHSDDTEVMLNALERLGAATFSWEEEGEVLVVN  470
             PGSKS S+RAL+LAAL +G   I NLL SDDT  ML AL  LGA     ++E  V++V 
Sbjct  12   IPGSKSNSHRALILAALAAGESTITNLLDSDDTLTMLEALRALGAEIIKLDDEKSVVIVE  71

Query  471  GKGGALQA-HPSPLYLGNAGTASRFLTTVATLATASSVDSSVLTGNNRMKQRPIGDLVDA  529
            G GG+ +A     L +GN+GTA R LT    L +       VL G+  + +RP+  L+DA
Sbjct  72   GLGGSFEAPEDLVLDMGNSGTALRPLTGRLALQSG----EVVLPGDCSIGKRPMDRLLDA  127

Query  530  LTANGAQIEYVENKGSLPLKIAASGGFTGGQINLAAKVSSQYVSSLLMCAP-YAKEPVTL  588
            L   GA+IE  E     PLK+    G   G I++   VSSQ+V+SLLM A   A+   T+
Sbjct  128  LRQLGAEIEGREGYNYAPLKVR---GLRLGGIHIDGDVSSQFVTSLLMLAALLAEGTTTI  184

Query  589  KLVGGKPISQPYIDMTTAMMRSFGIDVKKSTTEEHTYHIPQGRYINPAEYVVESDASSAT  648
            +       S+PYID T  M++ FG  ++ S TE         +     EY VE D SSA 
Sbjct  185  E----NLASEPYIDDTENMLKKFGAKIEGSGTELSITVKGGEKLP-GQEYRVEGDRSSAA  239

Query  649  YPLAIAAVTGTTCTIPNIGSKSLQGDARFAVDVLRPMGCTVEQTDTSTTVTGPADGVLRP  708
            Y L  AA+TG T T+ N+G  SLQGD    +++L  MG  + Q + +  V GP    LR 
Sbjct  240  YFLVAAAITGGTVTVENVGINSLQGD-EALLEILEKMGAEITQEEDADIVVGP--PGLRG  296

Query  709  LPNVDMEPMTDAFLGASVLAAIARGKDSNHTTRIYGIANQRVKECNRIKAMHDELAKFGV  768
               VD+    D     +VLAA A G     TTRI GI+  RVKE +R+ AM  EL + G 
Sbjct  297  KA-VDIRTAPDPAPTTAVLAAFAEG-----TTRIEGISELRVKETDRLFAMATELRRLGA  350

Query  769  VCREHDDGLEIDGIDRSTLRQPAGGVFCYDDHRVAFSFSVLSLIAPKPTLILEKECVGKT  828
               E  DGL I     +        V  Y DHR+A + ++  L+A   T+I + EC  ++
Sbjct  351  DVEELPDGLIIIP---AVKELKGAEVDSYGDHRIAMALALAGLVAEGETIIDDIECTDRS  407

Query  829  WPGWWDTL  836
            +P + + L
Sbjct  408  FPDFEEKL  415


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 256 bits (656),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 89/235 (38%), Positives = 141/235 (60%), Gaps = 14/235 (6%)

Query  1053  FVSLTLPDVRGADQILEQACVGSDAVELRVDLLEDPDSSNGIPTVDFVADQISYLRSRIT  1112
              V LT   +    + LE    G+D VELRVDLLE+P         + V++Q++ LR    
Sbjct  1     CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEPVED-----AEDVSEQLALLRRVGD  55

Query  1113  LPVIFTIRTKGQGGRFPDDAHAEAMQLYRLAVRSGCEFVDLEIAFPDEMLRAVTEMK--G  1170
             LP+IFT RTK +GG  PD +  E ++L RLA+R G ++VD+E+  P+E+L+ + E K  G
Sbjct  56    LPLIFTFRTKSEGGE-PDGSEEEYLELLRLALRLGVDYVDVELFLPEEILKELIEAKHEG  114

Query  1171  YSKIIASHHDPNGELSWANMSWMKYYNRALEYG-DVIKLVGVARNLDDNTALRKFKNWAE  1229
              +K+I S+HD  G  SW     +  Y +    G D++K+  +A++++D  AL +F +  +
Sbjct  115   GTKVIGSYHDFEGTPSWE--ELISRYEKMQALGADIVKIAVMAKSIEDVLALLRFTSEMK  172

Query  1230  EAHDVPLIAINMGGNGQLSRILNGFM-TPVSHPAL--PFRAAPGQLSATDIRKGL  1281
                D PLIA++MG  G++SR+L     +PV+  AL    ++APGQL+A ++R+ L
Sbjct  173   SLADKPLIAMSMGELGRISRVLGPIFGSPVTFAALGLAEKSAPGQLTAKELREAL  227


>CDD:426122 pfam01202, SKI, Shikimate kinase.  
Length=159

 Score = 168 bits (429),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)

Query  873   RGAGKTTSGHWVASTLKRPFIDLDDELERIEGMTIPDIIKQRGWQGFRDAELNLLQRTMK  932
              GAGK+T G  +A  L  PFID D+E+E+  GM+I +I ++ G +GFR  E  +L+  + 
Sbjct  1     MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLA  60

Query  933   ERPTGHVFACGGGVVEIPEARKLLIDWHKTKGNVLLIMRDIKQVMAFLNIDKTRPAYVED  992
             E   G V A GGG V   E R LL    K +G V+ +   ++ ++  L  DKTRP     
Sbjct  61    EH--GLVIATGGGAVLSEENRDLL----KERGIVIYLDAPLEVLLERLKRDKTRPLLQNK  114

Query  993   MLGVWLRRKPWFQECSNIQYYSQHAS-AGLPRASEDFARFIKFVT  1036
                  L    + +     +  +            E     ++ + 
Sbjct  115   DPEEELLELLFEERDPLYEEAADIVIDTDESSPEEVATEILEALE  159


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score = 116 bits (293),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 39/83 (47%), Positives = 52/83 (63%), Gaps = 2/83 (2%)

Query  1294  LFGSPISESRSPALHNTLFAEMGLPHEYTRLETA--NVEDVKDFIRAPDFGGASVTIPLK  1351
             + G+PIS S SPA+HN  F  +GL   Y   E    N+ D  + +RA  F G +VTIP K
Sbjct  1     VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  1352  LDIMPLLDEITAEAEIIGAVNTV  1374
                +PLLDE++ EA+ IGAVNT+
Sbjct  61    EAAIPLLDELSPEAKAIGAVNTI  83



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2006946798


Query= TCONS_00007698

Length=1578
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase. Th...  391     7e-126
CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshik...  377     1e-118
CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  256     3e-78 
CDD:426122 pfam01202, SKI, Shikimate kinase                           168     1e-48 
CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...  116     2e-31 


>CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase.  The 3-dehydroquinate 
synthase EC:4.6.1.3 domain is present in isolation 
in various bacterial 3-dehydroquinate synthases and also 
present as a domain in the pentafunctional AROM polypeptide. 
3-dehydroquinate (DHQ) synthase catalyzes the formation of 
dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino 
heptulosonic 7 phosphate. This reaction is part of the shikimate 
pathway which is involved in the biosynthesis of aromatic 
amino acids.
Length=260

 Score = 391 bits (1006),  Expect = 7e-126, Method: Composition-based stats.
 Identities = 145/286 (51%), Positives = 176/286 (62%), Gaps = 28/286 (10%)

Query  74   IYNAPPGEVSKSRQTKADIEDWMLSQSPPCGRDTVVIALGGGVIGDLTGFVAATYMRGVR  133
                P GE SK+ +T   I D +L       R +++IALGGGVIGDL GFVAATYMRG+R
Sbjct  1    TIVIPDGEKSKTLETLERIYDALLEAG--LDRSSLLIALGGGVIGDLAGFVAATYMRGIR  58

Query  134  FVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPSRIYIDLEFLETLPVREFINGMA  193
            F+QVPTTLLA VDSS+GGKT I+ PLGKNLIGA +QP  + IDL+FL+TLP REF  G+A
Sbjct  59   FIQVPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDLDFLKTLPDREFRAGLA  118

Query  194  EVIKTAAISSEEEFTALEDNAETILSAVRREVKPGQRRFEGIEEILKARILASARHKAFV  253
            EVIK   I+  E F  LE+NAE +L+                 + L+  I  S   KA V
Sbjct  119  EVIKYGLIADAEFFEWLEENAEALLNL--------------DPDALEEAIARSCEVKADV  164

Query  254  VSADEREGGLRNLLNWGHSIGHAIEAILTP-QILHGECVAIGMVKEAELARHLGILKGVA  312
            V+ DE+E GLR LLN GH+ GHAIEA+     +LHGE VAIGMV  A L+  LG+L    
Sbjct  165  VAQDEKESGLRALLNLGHTFGHAIEALSGYGALLHGEAVAIGMVLAARLSERLGLLDEAD  224

Query  313  VARIVKCIAAYGLPTSLKDSRIRKLTAGKHCSVDQILFNMALDKKN  358
            V RI   +  YGLPTSL D             V+Q+L  MA DKK 
Sbjct  225  VERIRALLKKYGLPTSLPDL-----------DVEQLLAAMARDKKV  259


>CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase). 
 
Length=415

 Score = 377 bits (971),  Expect = 1e-118, Method: Composition-based stats.
 Identities = 166/428 (39%), Positives = 226/428 (53%), Gaps = 26/428 (6%)

Query  411  PPGSKSISNRALVLAALGSGTVRIKNLLHSDDTEVMLNALERLGAATFSWEEEGEVLVVN  470
             PGSKS S+RAL+LAAL +G   I NLL SDDT  ML AL  LGA     ++E  V++V 
Sbjct  12   IPGSKSNSHRALILAALAAGESTITNLLDSDDTLTMLEALRALGAEIIKLDDEKSVVIVE  71

Query  471  GKGGALQA-HPSPLYLGNAGTASRFLTTVATLATASSVDSSVLTGNNRMKQRPIGDLVDA  529
            G GG+ +A     L +GN+GTA R LT    L +       VL G+  + +RP+  L+DA
Sbjct  72   GLGGSFEAPEDLVLDMGNSGTALRPLTGRLALQSG----EVVLPGDCSIGKRPMDRLLDA  127

Query  530  LTANGAQIEYVENKGSLPLKIAASGGFTGGQINLAAKVSSQYVSSLLMCAP-YAKEPVTL  588
            L   GA+IE  E     PLK+    G   G I++   VSSQ+V+SLLM A   A+   T+
Sbjct  128  LRQLGAEIEGREGYNYAPLKVR---GLRLGGIHIDGDVSSQFVTSLLMLAALLAEGTTTI  184

Query  589  KLVGGKPISQPYIDMTTAMMRSFGIDVKKSTTEEHTYHIPQGRYINPAEYVVESDASSAT  648
            +       S+PYID T  M++ FG  ++ S TE         +     EY VE D SSA 
Sbjct  185  E----NLASEPYIDDTENMLKKFGAKIEGSGTELSITVKGGEKLP-GQEYRVEGDRSSAA  239

Query  649  YPLAIAAVTGTTCTIPNIGSKSLQGDARFAVDVLRPMGCTVEQTDTSTTVTGPADGVLRP  708
            Y L  AA+TG T T+ N+G  SLQGD    +++L  MG  + Q + +  V GP    LR 
Sbjct  240  YFLVAAAITGGTVTVENVGINSLQGD-EALLEILEKMGAEITQEEDADIVVGP--PGLRG  296

Query  709  LPNVDMEPMTDAFLGASVLAAIARGKDSNHTTRIYGIANQRVKECNRIKAMHDELAKFGV  768
               VD+    D     +VLAA A G     TTRI GI+  RVKE +R+ AM  EL + G 
Sbjct  297  KA-VDIRTAPDPAPTTAVLAAFAEG-----TTRIEGISELRVKETDRLFAMATELRRLGA  350

Query  769  VCREHDDGLEIDGIDRSTLRQPAGGVFCYDDHRVAFSFSVLSLIAPKPTLILEKECVGKT  828
               E  DGL I     +        V  Y DHR+A + ++  L+A   T+I + EC  ++
Sbjct  351  DVEELPDGLIIIP---AVKELKGAEVDSYGDHRIAMALALAGLVAEGETIIDDIECTDRS  407

Query  829  WPGWWDTL  836
            +P + + L
Sbjct  408  FPDFEEKL  415


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 256 bits (656),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 89/235 (38%), Positives = 141/235 (60%), Gaps = 14/235 (6%)

Query  1053  FVSLTLPDVRGADQILEQACVGSDAVELRVDLLEDPDSSNGIPTVDFVADQISYLRSRIT  1112
              V LT   +    + LE    G+D VELRVDLLE+P         + V++Q++ LR    
Sbjct  1     CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEPVED-----AEDVSEQLALLRRVGD  55

Query  1113  LPVIFTIRTKGQGGRFPDDAHAEAMQLYRLAVRSGCEFVDLEIAFPDEMLRAVTEMK--G  1170
             LP+IFT RTK +GG  PD +  E ++L RLA+R G ++VD+E+  P+E+L+ + E K  G
Sbjct  56    LPLIFTFRTKSEGGE-PDGSEEEYLELLRLALRLGVDYVDVELFLPEEILKELIEAKHEG  114

Query  1171  YSKIIASHHDPNGELSWANMSWMKYYNRALEYG-DVIKLVGVARNLDDNTALRKFKNWAE  1229
              +K+I S+HD  G  SW     +  Y +    G D++K+  +A++++D  AL +F +  +
Sbjct  115   GTKVIGSYHDFEGTPSWE--ELISRYEKMQALGADIVKIAVMAKSIEDVLALLRFTSEMK  172

Query  1230  EAHDVPLIAINMGGNGQLSRILNGFM-TPVSHPAL--PFRAAPGQLSATDIRKGL  1281
                D PLIA++MG  G++SR+L     +PV+  AL    ++APGQL+A ++R+ L
Sbjct  173   SLADKPLIAMSMGELGRISRVLGPIFGSPVTFAALGLAEKSAPGQLTAKELREAL  227


>CDD:426122 pfam01202, SKI, Shikimate kinase.  
Length=159

 Score = 168 bits (429),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)

Query  873   RGAGKTTSGHWVASTLKRPFIDLDDELERIEGMTIPDIIKQRGWQGFRDAELNLLQRTMK  932
              GAGK+T G  +A  L  PFID D+E+E+  GM+I +I ++ G +GFR  E  +L+  + 
Sbjct  1     MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLA  60

Query  933   ERPTGHVFACGGGVVEIPEARKLLIDWHKTKGNVLLIMRDIKQVMAFLNIDKTRPAYVED  992
             E   G V A GGG V   E R LL    K +G V+ +   ++ ++  L  DKTRP     
Sbjct  61    EH--GLVIATGGGAVLSEENRDLL----KERGIVIYLDAPLEVLLERLKRDKTRPLLQNK  114

Query  993   MLGVWLRRKPWFQECSNIQYYSQHAS-AGLPRASEDFARFIKFVT  1036
                  L    + +     +  +            E     ++ + 
Sbjct  115   DPEEELLELLFEERDPLYEEAADIVIDTDESSPEEVATEILEALE  159


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score = 116 bits (293),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 39/83 (47%), Positives = 52/83 (63%), Gaps = 2/83 (2%)

Query  1294  LFGSPISESRSPALHNTLFAEMGLPHEYTRLETA--NVEDVKDFIRAPDFGGASVTIPLK  1351
             + G+PIS S SPA+HN  F  +GL   Y   E    N+ D  + +RA  F G +VTIP K
Sbjct  1     VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  1352  LDIMPLLDEITAEAEIIGAVNTV  1374
                +PLLDE++ EA+ IGAVNT+
Sbjct  61    EAAIPLLDELSPEAKAIGAVNTI  83



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2006946798


Query= TCONS_00002360

Length=1573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase. Th...  391     5e-126
CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshik...  378     9e-119
CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  256     2e-78 
CDD:426122 pfam01202, SKI, Shikimate kinase                           168     1e-48 
CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...  116     2e-31 


>CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase.  The 3-dehydroquinate 
synthase EC:4.6.1.3 domain is present in isolation 
in various bacterial 3-dehydroquinate synthases and also 
present as a domain in the pentafunctional AROM polypeptide. 
3-dehydroquinate (DHQ) synthase catalyzes the formation of 
dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino 
heptulosonic 7 phosphate. This reaction is part of the shikimate 
pathway which is involved in the biosynthesis of aromatic 
amino acids.
Length=260

 Score = 391 bits (1007),  Expect = 5e-126, Method: Composition-based stats.
 Identities = 145/286 (51%), Positives = 176/286 (62%), Gaps = 28/286 (10%)

Query  74   IYNAPPGEVSKSRQTKADIEDWMLSQSPPCGRDTVVIALGGGVIGDLTGFVAATYMRGVR  133
                P GE SK+ +T   I D +L       R +++IALGGGVIGDL GFVAATYMRG+R
Sbjct  1    TIVIPDGEKSKTLETLERIYDALLEAG--LDRSSLLIALGGGVIGDLAGFVAATYMRGIR  58

Query  134  FVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPSRIYIDLEFLETLPVREFINGMA  193
            F+QVPTTLLA VDSS+GGKT I+ PLGKNLIGA +QP  + IDL+FL+TLP REF  G+A
Sbjct  59   FIQVPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDLDFLKTLPDREFRAGLA  118

Query  194  EVIKTAAISSEEEFTALEDNAETILSAVRREVKPGQRRFEGIEEILKARILASARHKAFV  253
            EVIK   I+  E F  LE+NAE +L+                 + L+  I  S   KA V
Sbjct  119  EVIKYGLIADAEFFEWLEENAEALLNL--------------DPDALEEAIARSCEVKADV  164

Query  254  VSADEREGGLRNLLNWGHSIGHAIEAILTP-QILHGECVAIGMVKEAELARHLGILKGVA  312
            V+ DE+E GLR LLN GH+ GHAIEA+     +LHGE VAIGMV  A L+  LG+L    
Sbjct  165  VAQDEKESGLRALLNLGHTFGHAIEALSGYGALLHGEAVAIGMVLAARLSERLGLLDEAD  224

Query  313  VARIVKCIAAYGLPTSLKDSRIRKLTAGKHCSVDQILFNMALDKKN  358
            V RI   +  YGLPTSL D             V+Q+L  MA DKK 
Sbjct  225  VERIRALLKKYGLPTSLPDL-----------DVEQLLAAMARDKKV  259


>CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase). 
 
Length=415

 Score = 378 bits (972),  Expect = 9e-119, Method: Composition-based stats.
 Identities = 166/428 (39%), Positives = 226/428 (53%), Gaps = 26/428 (6%)

Query  411  PPGSKSISNRALVLAALGSGTVRIKNLLHSDDTEVMLNALERLGAATFSWEEEGEVLVVN  470
             PGSKS S+RAL+LAAL +G   I NLL SDDT  ML AL  LGA     ++E  V++V 
Sbjct  12   IPGSKSNSHRALILAALAAGESTITNLLDSDDTLTMLEALRALGAEIIKLDDEKSVVIVE  71

Query  471  GKGGALQA-HPSPLYLGNAGTASRFLTTVATLATASSVDSSVLTGNNRMKQRPIGDLVDA  529
            G GG+ +A     L +GN+GTA R LT    L +       VL G+  + +RP+  L+DA
Sbjct  72   GLGGSFEAPEDLVLDMGNSGTALRPLTGRLALQSG----EVVLPGDCSIGKRPMDRLLDA  127

Query  530  LTANGAQIEYVENKGSLPLKIAASGGFTGGQINLAAKVSSQYVSSLLMCAP-YAKEPVTL  588
            L   GA+IE  E     PLK+    G   G I++   VSSQ+V+SLLM A   A+   T+
Sbjct  128  LRQLGAEIEGREGYNYAPLKVR---GLRLGGIHIDGDVSSQFVTSLLMLAALLAEGTTTI  184

Query  589  KLVGGKPISQPYIDMTTAMMRSFGIDVKKSTTEEHTYHIPQGRYINPAEYVVESDASSAT  648
            +       S+PYID T  M++ FG  ++ S TE         +     EY VE D SSA 
Sbjct  185  E----NLASEPYIDDTENMLKKFGAKIEGSGTELSITVKGGEKLP-GQEYRVEGDRSSAA  239

Query  649  YPLAIAAVTGTTCTIPNIGSKSLQGDARFAVDVLRPMGCTVEQTDTSTTVTGPADGVLRP  708
            Y L  AA+TG T T+ N+G  SLQGD    +++L  MG  + Q + +  V GP    LR 
Sbjct  240  YFLVAAAITGGTVTVENVGINSLQGD-EALLEILEKMGAEITQEEDADIVVGP--PGLRG  296

Query  709  LPNVDMEPMTDAFLGASVLAAIARGKDSNHTTRIYGIANQRVKECNRIKAMHDELAKFGV  768
               VD+    D     +VLAA A G     TTRI GI+  RVKE +R+ AM  EL + G 
Sbjct  297  KA-VDIRTAPDPAPTTAVLAAFAEG-----TTRIEGISELRVKETDRLFAMATELRRLGA  350

Query  769  VCREHDDGLEIDGIDRSTLRQPAGGVFCYDDHRVAFSFSVLSLIAPKPTLILEKECVGKT  828
               E  DGL I     +        V  Y DHR+A + ++  L+A   T+I + EC  ++
Sbjct  351  DVEELPDGLIIIP---AVKELKGAEVDSYGDHRIAMALALAGLVAEGETIIDDIECTDRS  407

Query  829  WPGWWDTL  836
            +P + + L
Sbjct  408  FPDFEEKL  415


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 256 bits (657),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 89/235 (38%), Positives = 141/235 (60%), Gaps = 14/235 (6%)

Query  1053  FVSLTLPDVRGADQILEQACVGSDAVELRVDLLEDPDSSNGIPTVDFVADQISYLRSRIT  1112
              V LT   +    + LE    G+D VELRVDLLE+P         + V++Q++ LR    
Sbjct  1     CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEPVED-----AEDVSEQLALLRRVGD  55

Query  1113  LPVIFTIRTKGQGGRFPDDAHAEAMQLYRLAVRSGCEFVDLEIAFPDEMLRAVTEMK--G  1170
             LP+IFT RTK +GG  PD +  E ++L RLA+R G ++VD+E+  P+E+L+ + E K  G
Sbjct  56    LPLIFTFRTKSEGGE-PDGSEEEYLELLRLALRLGVDYVDVELFLPEEILKELIEAKHEG  114

Query  1171  YSKIIASHHDPNGELSWANMSWMKYYNRALEYG-DVIKLVGVARNLDDNTALRKFKNWAE  1229
              +K+I S+HD  G  SW     +  Y +    G D++K+  +A++++D  AL +F +  +
Sbjct  115   GTKVIGSYHDFEGTPSWE--ELISRYEKMQALGADIVKIAVMAKSIEDVLALLRFTSEMK  172

Query  1230  EAHDVPLIAINMGGNGQLSRILNGFM-TPVSHPAL--PFRAAPGQLSATDIRKGL  1281
                D PLIA++MG  G++SR+L     +PV+  AL    ++APGQL+A ++R+ L
Sbjct  173   SLADKPLIAMSMGELGRISRVLGPIFGSPVTFAALGLAEKSAPGQLTAKELREAL  227


>CDD:426122 pfam01202, SKI, Shikimate kinase.  
Length=159

 Score = 168 bits (429),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)

Query  873   RGAGKTTSGHWVASTLKRPFIDLDDELERIEGMTIPDIIKQRGWQGFRDAELNLLQRTMK  932
              GAGK+T G  +A  L  PFID D+E+E+  GM+I +I ++ G +GFR  E  +L+  + 
Sbjct  1     MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLA  60

Query  933   ERPTGHVFACGGGVVEIPEARKLLIDWHKTKGNVLLIMRDIKQVMAFLNIDKTRPAYVED  992
             E   G V A GGG V   E R LL    K +G V+ +   ++ ++  L  DKTRP     
Sbjct  61    EH--GLVIATGGGAVLSEENRDLL----KERGIVIYLDAPLEVLLERLKRDKTRPLLQNK  114

Query  993   MLGVWLRRKPWFQECSNIQYYSQHAS-AGLPRASEDFARFIKFVT  1036
                  L    + +     +  +            E     ++ + 
Sbjct  115   DPEEELLELLFEERDPLYEEAADIVIDTDESSPEEVATEILEALE  159


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score = 116 bits (293),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 39/83 (47%), Positives = 52/83 (63%), Gaps = 2/83 (2%)

Query  1294  LFGSPISESRSPALHNTLFAEMGLPHEYTRLETA--NVEDVKDFIRAPDFGGASVTIPLK  1351
             + G+PIS S SPA+HN  F  +GL   Y   E    N+ D  + +RA  F G +VTIP K
Sbjct  1     VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  1352  LDIMPLLDEITAEAEIIGAVNTV  1374
                +PLLDE++ EA+ IGAVNT+
Sbjct  61    EAAIPLLDELSPEAKAIGAVNTI  83



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0670    0.140     1.90     42.6     43.6 

Effective search space used: 2000161988


Query= TCONS_00002361

Length=1573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase. Th...  391     5e-126
CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshik...  378     9e-119
CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  256     2e-78 
CDD:426122 pfam01202, SKI, Shikimate kinase                           168     1e-48 
CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...  116     2e-31 


>CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase.  The 3-dehydroquinate 
synthase EC:4.6.1.3 domain is present in isolation 
in various bacterial 3-dehydroquinate synthases and also 
present as a domain in the pentafunctional AROM polypeptide. 
3-dehydroquinate (DHQ) synthase catalyzes the formation of 
dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino 
heptulosonic 7 phosphate. This reaction is part of the shikimate 
pathway which is involved in the biosynthesis of aromatic 
amino acids.
Length=260

 Score = 391 bits (1007),  Expect = 5e-126, Method: Composition-based stats.
 Identities = 145/286 (51%), Positives = 176/286 (62%), Gaps = 28/286 (10%)

Query  74   IYNAPPGEVSKSRQTKADIEDWMLSQSPPCGRDTVVIALGGGVIGDLTGFVAATYMRGVR  133
                P GE SK+ +T   I D +L       R +++IALGGGVIGDL GFVAATYMRG+R
Sbjct  1    TIVIPDGEKSKTLETLERIYDALLEAG--LDRSSLLIALGGGVIGDLAGFVAATYMRGIR  58

Query  134  FVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPSRIYIDLEFLETLPVREFINGMA  193
            F+QVPTTLLA VDSS+GGKT I+ PLGKNLIGA +QP  + IDL+FL+TLP REF  G+A
Sbjct  59   FIQVPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDLDFLKTLPDREFRAGLA  118

Query  194  EVIKTAAISSEEEFTALEDNAETILSAVRREVKPGQRRFEGIEEILKARILASARHKAFV  253
            EVIK   I+  E F  LE+NAE +L+                 + L+  I  S   KA V
Sbjct  119  EVIKYGLIADAEFFEWLEENAEALLNL--------------DPDALEEAIARSCEVKADV  164

Query  254  VSADEREGGLRNLLNWGHSIGHAIEAILTP-QILHGECVAIGMVKEAELARHLGILKGVA  312
            V+ DE+E GLR LLN GH+ GHAIEA+     +LHGE VAIGMV  A L+  LG+L    
Sbjct  165  VAQDEKESGLRALLNLGHTFGHAIEALSGYGALLHGEAVAIGMVLAARLSERLGLLDEAD  224

Query  313  VARIVKCIAAYGLPTSLKDSRIRKLTAGKHCSVDQILFNMALDKKN  358
            V RI   +  YGLPTSL D             V+Q+L  MA DKK 
Sbjct  225  VERIRALLKKYGLPTSLPDL-----------DVEQLLAAMARDKKV  259


>CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase). 
 
Length=415

 Score = 378 bits (972),  Expect = 9e-119, Method: Composition-based stats.
 Identities = 166/428 (39%), Positives = 226/428 (53%), Gaps = 26/428 (6%)

Query  411  PPGSKSISNRALVLAALGSGTVRIKNLLHSDDTEVMLNALERLGAATFSWEEEGEVLVVN  470
             PGSKS S+RAL+LAAL +G   I NLL SDDT  ML AL  LGA     ++E  V++V 
Sbjct  12   IPGSKSNSHRALILAALAAGESTITNLLDSDDTLTMLEALRALGAEIIKLDDEKSVVIVE  71

Query  471  GKGGALQA-HPSPLYLGNAGTASRFLTTVATLATASSVDSSVLTGNNRMKQRPIGDLVDA  529
            G GG+ +A     L +GN+GTA R LT    L +       VL G+  + +RP+  L+DA
Sbjct  72   GLGGSFEAPEDLVLDMGNSGTALRPLTGRLALQSG----EVVLPGDCSIGKRPMDRLLDA  127

Query  530  LTANGAQIEYVENKGSLPLKIAASGGFTGGQINLAAKVSSQYVSSLLMCAP-YAKEPVTL  588
            L   GA+IE  E     PLK+    G   G I++   VSSQ+V+SLLM A   A+   T+
Sbjct  128  LRQLGAEIEGREGYNYAPLKVR---GLRLGGIHIDGDVSSQFVTSLLMLAALLAEGTTTI  184

Query  589  KLVGGKPISQPYIDMTTAMMRSFGIDVKKSTTEEHTYHIPQGRYINPAEYVVESDASSAT  648
            +       S+PYID T  M++ FG  ++ S TE         +     EY VE D SSA 
Sbjct  185  E----NLASEPYIDDTENMLKKFGAKIEGSGTELSITVKGGEKLP-GQEYRVEGDRSSAA  239

Query  649  YPLAIAAVTGTTCTIPNIGSKSLQGDARFAVDVLRPMGCTVEQTDTSTTVTGPADGVLRP  708
            Y L  AA+TG T T+ N+G  SLQGD    +++L  MG  + Q + +  V GP    LR 
Sbjct  240  YFLVAAAITGGTVTVENVGINSLQGD-EALLEILEKMGAEITQEEDADIVVGP--PGLRG  296

Query  709  LPNVDMEPMTDAFLGASVLAAIARGKDSNHTTRIYGIANQRVKECNRIKAMHDELAKFGV  768
               VD+    D     +VLAA A G     TTRI GI+  RVKE +R+ AM  EL + G 
Sbjct  297  KA-VDIRTAPDPAPTTAVLAAFAEG-----TTRIEGISELRVKETDRLFAMATELRRLGA  350

Query  769  VCREHDDGLEIDGIDRSTLRQPAGGVFCYDDHRVAFSFSVLSLIAPKPTLILEKECVGKT  828
               E  DGL I     +        V  Y DHR+A + ++  L+A   T+I + EC  ++
Sbjct  351  DVEELPDGLIIIP---AVKELKGAEVDSYGDHRIAMALALAGLVAEGETIIDDIECTDRS  407

Query  829  WPGWWDTL  836
            +P + + L
Sbjct  408  FPDFEEKL  415


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 256 bits (657),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 89/235 (38%), Positives = 141/235 (60%), Gaps = 14/235 (6%)

Query  1053  FVSLTLPDVRGADQILEQACVGSDAVELRVDLLEDPDSSNGIPTVDFVADQISYLRSRIT  1112
              V LT   +    + LE    G+D VELRVDLLE+P         + V++Q++ LR    
Sbjct  1     CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEPVED-----AEDVSEQLALLRRVGD  55

Query  1113  LPVIFTIRTKGQGGRFPDDAHAEAMQLYRLAVRSGCEFVDLEIAFPDEMLRAVTEMK--G  1170
             LP+IFT RTK +GG  PD +  E ++L RLA+R G ++VD+E+  P+E+L+ + E K  G
Sbjct  56    LPLIFTFRTKSEGGE-PDGSEEEYLELLRLALRLGVDYVDVELFLPEEILKELIEAKHEG  114

Query  1171  YSKIIASHHDPNGELSWANMSWMKYYNRALEYG-DVIKLVGVARNLDDNTALRKFKNWAE  1229
              +K+I S+HD  G  SW     +  Y +    G D++K+  +A++++D  AL +F +  +
Sbjct  115   GTKVIGSYHDFEGTPSWE--ELISRYEKMQALGADIVKIAVMAKSIEDVLALLRFTSEMK  172

Query  1230  EAHDVPLIAINMGGNGQLSRILNGFM-TPVSHPAL--PFRAAPGQLSATDIRKGL  1281
                D PLIA++MG  G++SR+L     +PV+  AL    ++APGQL+A ++R+ L
Sbjct  173   SLADKPLIAMSMGELGRISRVLGPIFGSPVTFAALGLAEKSAPGQLTAKELREAL  227


>CDD:426122 pfam01202, SKI, Shikimate kinase.  
Length=159

 Score = 168 bits (429),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)

Query  873   RGAGKTTSGHWVASTLKRPFIDLDDELERIEGMTIPDIIKQRGWQGFRDAELNLLQRTMK  932
              GAGK+T G  +A  L  PFID D+E+E+  GM+I +I ++ G +GFR  E  +L+  + 
Sbjct  1     MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLA  60

Query  933   ERPTGHVFACGGGVVEIPEARKLLIDWHKTKGNVLLIMRDIKQVMAFLNIDKTRPAYVED  992
             E   G V A GGG V   E R LL    K +G V+ +   ++ ++  L  DKTRP     
Sbjct  61    EH--GLVIATGGGAVLSEENRDLL----KERGIVIYLDAPLEVLLERLKRDKTRPLLQNK  114

Query  993   MLGVWLRRKPWFQECSNIQYYSQHAS-AGLPRASEDFARFIKFVT  1036
                  L    + +     +  +            E     ++ + 
Sbjct  115   DPEEELLELLFEERDPLYEEAADIVIDTDESSPEEVATEILEALE  159


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score = 116 bits (293),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 39/83 (47%), Positives = 52/83 (63%), Gaps = 2/83 (2%)

Query  1294  LFGSPISESRSPALHNTLFAEMGLPHEYTRLETA--NVEDVKDFIRAPDFGGASVTIPLK  1351
             + G+PIS S SPA+HN  F  +GL   Y   E    N+ D  + +RA  F G +VTIP K
Sbjct  1     VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  1352  LDIMPLLDEITAEAEIIGAVNTV  1374
                +PLLDE++ EA+ IGAVNT+
Sbjct  61    EAAIPLLDELSPEAKAIGAVNTI  83



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2000161988


Query= TCONS_00007699

Length=1578
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase. Th...  391     7e-126
CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshik...  377     1e-118
CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  256     3e-78 
CDD:426122 pfam01202, SKI, Shikimate kinase                           168     1e-48 
CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...  116     2e-31 


>CDD:426414 pfam01761, DHQ_synthase, 3-dehydroquinate synthase.  The 3-dehydroquinate 
synthase EC:4.6.1.3 domain is present in isolation 
in various bacterial 3-dehydroquinate synthases and also 
present as a domain in the pentafunctional AROM polypeptide. 
3-dehydroquinate (DHQ) synthase catalyzes the formation of 
dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino 
heptulosonic 7 phosphate. This reaction is part of the shikimate 
pathway which is involved in the biosynthesis of aromatic 
amino acids.
Length=260

 Score = 391 bits (1006),  Expect = 7e-126, Method: Composition-based stats.
 Identities = 145/286 (51%), Positives = 176/286 (62%), Gaps = 28/286 (10%)

Query  74   IYNAPPGEVSKSRQTKADIEDWMLSQSPPCGRDTVVIALGGGVIGDLTGFVAATYMRGVR  133
                P GE SK+ +T   I D +L       R +++IALGGGVIGDL GFVAATYMRG+R
Sbjct  1    TIVIPDGEKSKTLETLERIYDALLEAG--LDRSSLLIALGGGVIGDLAGFVAATYMRGIR  58

Query  134  FVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPSRIYIDLEFLETLPVREFINGMA  193
            F+QVPTTLLA VDSS+GGKT I+ PLGKNLIGA +QP  + IDL+FL+TLP REF  G+A
Sbjct  59   FIQVPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDLDFLKTLPDREFRAGLA  118

Query  194  EVIKTAAISSEEEFTALEDNAETILSAVRREVKPGQRRFEGIEEILKARILASARHKAFV  253
            EVIK   I+  E F  LE+NAE +L+                 + L+  I  S   KA V
Sbjct  119  EVIKYGLIADAEFFEWLEENAEALLNL--------------DPDALEEAIARSCEVKADV  164

Query  254  VSADEREGGLRNLLNWGHSIGHAIEAILTP-QILHGECVAIGMVKEAELARHLGILKGVA  312
            V+ DE+E GLR LLN GH+ GHAIEA+     +LHGE VAIGMV  A L+  LG+L    
Sbjct  165  VAQDEKESGLRALLNLGHTFGHAIEALSGYGALLHGEAVAIGMVLAARLSERLGLLDEAD  224

Query  313  VARIVKCIAAYGLPTSLKDSRIRKLTAGKHCSVDQILFNMALDKKN  358
            V RI   +  YGLPTSL D             V+Q+L  MA DKK 
Sbjct  225  VERIRALLKKYGLPTSLPDL-----------DVEQLLAAMARDKKV  259


>CDD:395213 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase). 
 
Length=415

 Score = 377 bits (971),  Expect = 1e-118, Method: Composition-based stats.
 Identities = 166/428 (39%), Positives = 226/428 (53%), Gaps = 26/428 (6%)

Query  411  PPGSKSISNRALVLAALGSGTVRIKNLLHSDDTEVMLNALERLGAATFSWEEEGEVLVVN  470
             PGSKS S+RAL+LAAL +G   I NLL SDDT  ML AL  LGA     ++E  V++V 
Sbjct  12   IPGSKSNSHRALILAALAAGESTITNLLDSDDTLTMLEALRALGAEIIKLDDEKSVVIVE  71

Query  471  GKGGALQA-HPSPLYLGNAGTASRFLTTVATLATASSVDSSVLTGNNRMKQRPIGDLVDA  529
            G GG+ +A     L +GN+GTA R LT    L +       VL G+  + +RP+  L+DA
Sbjct  72   GLGGSFEAPEDLVLDMGNSGTALRPLTGRLALQSG----EVVLPGDCSIGKRPMDRLLDA  127

Query  530  LTANGAQIEYVENKGSLPLKIAASGGFTGGQINLAAKVSSQYVSSLLMCAP-YAKEPVTL  588
            L   GA+IE  E     PLK+    G   G I++   VSSQ+V+SLLM A   A+   T+
Sbjct  128  LRQLGAEIEGREGYNYAPLKVR---GLRLGGIHIDGDVSSQFVTSLLMLAALLAEGTTTI  184

Query  589  KLVGGKPISQPYIDMTTAMMRSFGIDVKKSTTEEHTYHIPQGRYINPAEYVVESDASSAT  648
            +       S+PYID T  M++ FG  ++ S TE         +     EY VE D SSA 
Sbjct  185  E----NLASEPYIDDTENMLKKFGAKIEGSGTELSITVKGGEKLP-GQEYRVEGDRSSAA  239

Query  649  YPLAIAAVTGTTCTIPNIGSKSLQGDARFAVDVLRPMGCTVEQTDTSTTVTGPADGVLRP  708
            Y L  AA+TG T T+ N+G  SLQGD    +++L  MG  + Q + +  V GP    LR 
Sbjct  240  YFLVAAAITGGTVTVENVGINSLQGD-EALLEILEKMGAEITQEEDADIVVGP--PGLRG  296

Query  709  LPNVDMEPMTDAFLGASVLAAIARGKDSNHTTRIYGIANQRVKECNRIKAMHDELAKFGV  768
               VD+    D     +VLAA A G     TTRI GI+  RVKE +R+ AM  EL + G 
Sbjct  297  KA-VDIRTAPDPAPTTAVLAAFAEG-----TTRIEGISELRVKETDRLFAMATELRRLGA  350

Query  769  VCREHDDGLEIDGIDRSTLRQPAGGVFCYDDHRVAFSFSVLSLIAPKPTLILEKECVGKT  828
               E  DGL I     +        V  Y DHR+A + ++  L+A   T+I + EC  ++
Sbjct  351  DVEELPDGLIIIP---AVKELKGAEVDSYGDHRIAMALALAGLVAEGETIIDDIECTDRS  407

Query  829  WPGWWDTL  836
            +P + + L
Sbjct  408  FPDFEEKL  415


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 256 bits (656),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 89/235 (38%), Positives = 141/235 (60%), Gaps = 14/235 (6%)

Query  1053  FVSLTLPDVRGADQILEQACVGSDAVELRVDLLEDPDSSNGIPTVDFVADQISYLRSRIT  1112
              V LT   +    + LE    G+D VELRVDLLE+P         + V++Q++ LR    
Sbjct  1     CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEPVED-----AEDVSEQLALLRRVGD  55

Query  1113  LPVIFTIRTKGQGGRFPDDAHAEAMQLYRLAVRSGCEFVDLEIAFPDEMLRAVTEMK--G  1170
             LP+IFT RTK +GG  PD +  E ++L RLA+R G ++VD+E+  P+E+L+ + E K  G
Sbjct  56    LPLIFTFRTKSEGGE-PDGSEEEYLELLRLALRLGVDYVDVELFLPEEILKELIEAKHEG  114

Query  1171  YSKIIASHHDPNGELSWANMSWMKYYNRALEYG-DVIKLVGVARNLDDNTALRKFKNWAE  1229
              +K+I S+HD  G  SW     +  Y +    G D++K+  +A++++D  AL +F +  +
Sbjct  115   GTKVIGSYHDFEGTPSWE--ELISRYEKMQALGADIVKIAVMAKSIEDVLALLRFTSEMK  172

Query  1230  EAHDVPLIAINMGGNGQLSRILNGFM-TPVSHPAL--PFRAAPGQLSATDIRKGL  1281
                D PLIA++MG  G++SR+L     +PV+  AL    ++APGQL+A ++R+ L
Sbjct  173   SLADKPLIAMSMGELGRISRVLGPIFGSPVTFAALGLAEKSAPGQLTAKELREAL  227


>CDD:426122 pfam01202, SKI, Shikimate kinase.  
Length=159

 Score = 168 bits (429),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)

Query  873   RGAGKTTSGHWVASTLKRPFIDLDDELERIEGMTIPDIIKQRGWQGFRDAELNLLQRTMK  932
              GAGK+T G  +A  L  PFID D+E+E+  GM+I +I ++ G +GFR  E  +L+  + 
Sbjct  1     MGAGKSTIGRLLAKALGLPFIDTDEEIEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLA  60

Query  933   ERPTGHVFACGGGVVEIPEARKLLIDWHKTKGNVLLIMRDIKQVMAFLNIDKTRPAYVED  992
             E   G V A GGG V   E R LL    K +G V+ +   ++ ++  L  DKTRP     
Sbjct  61    EH--GLVIATGGGAVLSEENRDLL----KERGIVIYLDAPLEVLLERLKRDKTRPLLQNK  114

Query  993   MLGVWLRRKPWFQECSNIQYYSQHAS-AGLPRASEDFARFIKFVT  1036
                  L    + +     +  +            E     ++ + 
Sbjct  115   DPEEELLELLFEERDPLYEEAADIVIDTDESSPEEVATEILEALE  159


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score = 116 bits (293),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 39/83 (47%), Positives = 52/83 (63%), Gaps = 2/83 (2%)

Query  1294  LFGSPISESRSPALHNTLFAEMGLPHEYTRLETA--NVEDVKDFIRAPDFGGASVTIPLK  1351
             + G+PIS S SPA+HN  F  +GL   Y   E    N+ D  + +RA  F G +VTIP K
Sbjct  1     VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  1352  LDIMPLLDEITAEAEIIGAVNTV  1374
                +PLLDE++ EA+ IGAVNT+
Sbjct  61    EAAIPLLDELSPEAKAIGAVNTI  83



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2006946798


Query= TCONS_00002364

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00007701

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00007700

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00007702

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00007703

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00002365

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00007704

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00007705

Length=353


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00002366

Length=707


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905521060


Query= TCONS_00002367

Length=707


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905521060


Query= TCONS_00007706

Length=687


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 876025260


Query= TCONS_00002368

Length=729


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 924021520


Query= TCONS_00002371

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00002372

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00007707

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459682 pfam00125, Histone, Core histone H2A/H2B/H3/H4             154     3e-50


>CDD:459682 pfam00125, Histone, Core histone H2A/H2B/H3/H4.  
Length=126

 Score = 154 bits (392),  Expect = 3e-50, Method: Composition-based stats.
 Identities = 76/132 (58%), Positives = 95/132 (72%), Gaps = 6/132 (5%)

Query  1    MARTKQTARKSTGGKAPRKQLASKAARKAAPSTGGVKKPHRYKPGTVALREIRRYQKSTE  60
            MAR K  A    GG AP K+++ K++  +       KK  RY+PGTVAL+EIR+YQ ST+
Sbjct  1    MARNKNKANPRRGGTAPEKKISQKSSSSS------KKKTRRYRPGTVALKEIRKYQSSTD  54

Query  61   LLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTI  120
            LLI KLPF R+VRE+ Q  K+DLR  + A+ ALQE+VE +LV LFE+ NL AIHAKRVT+
Sbjct  55   LLIYKLPFARVVREVVQSTKTDLRISADAVVALQEAVEDFLVELFEEANLLAIHAKRVTL  114

Query  121  QSKDIQLARRLR  132
              KDIQLARRLR
Sbjct  115  TPKDIQLARRLR  126



Lambda      K        H        a         alpha
   0.318    0.130    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00002373

Length=96
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459682 pfam00125, Histone, Core histone H2A/H2B/H3/H4             139     8e-45


>CDD:459682 pfam00125, Histone, Core histone H2A/H2B/H3/H4.  
Length=126

 Score = 139 bits (351),  Expect = 8e-45, Method: Composition-based stats.
 Identities = 61/91 (67%), Positives = 74/91 (81%), Gaps = 0/91 (0%)

Query  2    FAPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYL  61
            + PGTVAL+EIR+YQ ST+LLI KLPF R+VRE+ Q  K+DLR  + A+ ALQE+VE +L
Sbjct  36   YRPGTVALKEIRKYQSSTDLLIYKLPFARVVREVVQSTKTDLRISADAVVALQEAVEDFL  95

Query  62   VSLFEDTNLCAIHAKRVTIQSKDIQLARRLR  92
            V LFE+ NL AIHAKRVT+  KDIQLARRLR
Sbjct  96   VELFEEANLLAIHAKRVTLTPKDIQLARRLR  126



Lambda      K        H        a         alpha
   0.324    0.136    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00002374

Length=96
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459682 pfam00125, Histone, Core histone H2A/H2B/H3/H4             139     8e-45


>CDD:459682 pfam00125, Histone, Core histone H2A/H2B/H3/H4.  
Length=126

 Score = 139 bits (351),  Expect = 8e-45, Method: Composition-based stats.
 Identities = 61/91 (67%), Positives = 74/91 (81%), Gaps = 0/91 (0%)

Query  2    FAPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYL  61
            + PGTVAL+EIR+YQ ST+LLI KLPF R+VRE+ Q  K+DLR  + A+ ALQE+VE +L
Sbjct  36   YRPGTVALKEIRKYQSSTDLLIYKLPFARVVREVVQSTKTDLRISADAVVALQEAVEDFL  95

Query  62   VSLFEDTNLCAIHAKRVTIQSKDIQLARRLR  92
            V LFE+ NL AIHAKRVT+  KDIQLARRLR
Sbjct  96   VELFEEANLLAIHAKRVTLTPKDIQLARRLR  126



Lambda      K        H        a         alpha
   0.324    0.136    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00007708

Length=413


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00002375

Length=413


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00002376

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0733    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00007709

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00002377

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00007710

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00007711

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00002378

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00002379

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461182 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family. The 22-k...  71.0    1e-16


>CDD:461182 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family.  The 22-kDa peroxisomal 
membrane protein (PMP22) is a major component of peroxisomal 
membranes. PMP22 seems to be involved in pore forming 
activity and may contribute to the unspecific permeability 
of the organelle membrane. PMP22 is synthesized on free cytosolic 
ribosomes and then directed to the peroxisome membrane 
by specific targeting information. Mpv17 is a closely related 
peroxisomal protein. In mouse, the Mpv17 protein is involved 
in the development of early-onset glomerulosclerosis. 
More recently a homolog of Mpv17 in S. cerevisiae has been 
been found to be an integral membrane protein of the inner mitochondrial 
membrane where it has been proposed to have a role 
in ethanol metabolism and tolerance during heat-shock. Defects 
in MPV17 is associated with mitochondrial DNA depletion 
syndrome (MDDS) and Navajo neurohepatopathy (NNH). MDDS is 
a clinically heterogeneous group of disorders characterized 
by a reduction in mitochondrial DNA (mtDNA) copy number. Primary 
mtDNA depletion is inherited as an autosomal recessive 
trait and may affect single organs, typically muscle or liver, 
or multiple tissues. Individuals with the hepatocerebral 
form of mitochondrial DNA depletion syndrome have early progressive 
liver failure and neurologic abnormalities, hypoglycemia, 
and increased lactate in body fluids. NNH is an autosomal 
recessive disease that is prevalent among Navajo children 
in the South Western states of America. The major clinical 
features are hepatopathy, peripheral neuropathy, corneal 
anesthesia and scarring, acral mutilation, cerebral leukoencephalopathy, 
failure to thrive, and recurrent metabolic acidosis 
with intercurrent infections. Infantile, childhood, and 
classic forms of NNH have been described. Mitochondrial DNA 
depletion was detected in the livers of patients, suggesting 
a primary defect in mtDNA maintenance.
Length=62

 Score = 71.0 bits (175),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 24/62 (39%), Positives = 36/62 (58%), Gaps = 0/62 (0%)

Query  230  SLLAGASLEETFERLKVALPVSISNSVKLWPAVTAFSFVYVSPPFRSIFAGVIAVGWQTY  289
             LL G SLEE  E+LK     ++  + K+WP V   +F +V   +R +F  V+++ W TY
Sbjct  1    GLLEGKSLEEIKEKLKRKFWPTLKANWKVWPPVQFINFRFVPLQYRVLFVNVVSLFWNTY  60

Query  290  LS  291
            LS
Sbjct  61   LS  62



Lambda      K        H        a         alpha
   0.316    0.126    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00002380

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.123    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00002381

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430843 pfam09810, Exo5, Exonuclease V - a 5' deoxyribonucleas...  214     2e-70


>CDD:430843 pfam09810, Exo5, Exonuclease V - a 5' deoxyribonuclease.  Exonuclease 
V is a monomeric 5' deoxyribonuclease that is localized 
in the nucleus. It degrades single-stranded, but not double-stranded, 
DNA from the 5'-end, and the products are dinucleotides, 
except the 3'-terminal tri- and tetranucleotides, 
which are not degraded. The initial hydrolytic cut of exonuclease 
V on the dephosphorylated substrate produces a mixture 
of dinucleoside monophosphates and trinucleoside diphosphates. 
The enzyme is processive in action. Exo5 is specific for 
single-stranded DNA and does not hydrolyze RNA. However, 
Exo5 has the capacity to slide across 5' double-stranded DNA 
or 5' RNA sequences and resume cutting two nucleotides downstream 
of the double-stranded-to-single-stranded junction or 
RNA-to-DNA junction, respectively.
Length=363

 Score = 214 bits (546),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 79/94 (84%), Positives = 84/94 (89%), Gaps = 0/94 (0%)

Query  52   SPIERFRKPPNKAFSVTDLISPAWCELQYWYTLTKHGRKRRTPAMKQGSTIHKTLEDEVH  111
            SP+ERFR PP K  SVTDL+SPAWCELQYWYTLTK GRKRRTPAMKQGS +HK LEDEVH
Sbjct  1    SPLERFRTPPKKPLSVTDLVSPAWCELQYWYTLTKLGRKRRTPAMKQGSKVHKKLEDEVH  60

Query  112  TTVPVEITTKEDALALRLWNVIQGLRTLREYGLT  145
            TTVPVE+TTKEDA  LR+WNVIQGLRTLRE GLT
Sbjct  61   TTVPVEVTTKEDAWGLRIWNVIQGLRTLRETGLT  94



Lambda      K        H        a         alpha
   0.318    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00002382

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430843 pfam09810, Exo5, Exonuclease V - a 5' deoxyribonucleas...  581     0.0  


>CDD:430843 pfam09810, Exo5, Exonuclease V - a 5' deoxyribonuclease.  Exonuclease 
V is a monomeric 5' deoxyribonuclease that is localized 
in the nucleus. It degrades single-stranded, but not double-stranded, 
DNA from the 5'-end, and the products are dinucleotides, 
except the 3'-terminal tri- and tetranucleotides, 
which are not degraded. The initial hydrolytic cut of exonuclease 
V on the dephosphorylated substrate produces a mixture 
of dinucleoside monophosphates and trinucleoside diphosphates. 
The enzyme is processive in action. Exo5 is specific for 
single-stranded DNA and does not hydrolyze RNA. However, 
Exo5 has the capacity to slide across 5' double-stranded DNA 
or 5' RNA sequences and resume cutting two nucleotides downstream 
of the double-stranded-to-single-stranded junction or 
RNA-to-DNA junction, respectively.
Length=363

 Score = 581 bits (1500),  Expect = 0.0, Method: Composition-based stats.
 Identities = 226/437 (52%), Positives = 275/437 (63%), Gaps = 74/437 (17%)

Query  90   SPIERFRKPPNKAFSVTDLISPAWCELQYWYTLTKHGRKRRTPAMKQGSTIHKTLEDEVH  149
            SP+ERFR PP K  SVTDL+SPAWCELQYWYTLTK GRKRRTPAMKQGS +HK LEDEVH
Sbjct  1    SPLERFRTPPKKPLSVTDLVSPAWCELQYWYTLTKLGRKRRTPAMKQGSKVHKKLEDEVH  60

Query  150  TTVPVEITTKEDALALRLWNVIQGLRTLREYGLTRELEVWGLVDGELVNGVIDQLSYECP  209
            TTVPVE+TTKEDA  LR+WNVIQGLRTLRE GLTRELEVWG VDGELVNGVID+LSYECP
Sbjct  61   TTVPVEVTTKEDAWGLRIWNVIQGLRTLRETGLTRELEVWGFVDGELVNGVIDELSYECP  120

Query  210  DPELEATAATYYADVEASRAVMPEYQMSLTDYLLAPSQGGKRLSEMTWKDEPDEHVEDAP  269
            DPELE       AD  +S A +P+ QMS+TDY L+ S+  KR                  
Sbjct  121  DPELEEELLENGADKGSSIAPLPKDQMSITDYFLSSSRPSKR------------------  162

Query  270  STESSEAFNIPRVYLTDIKTRASGSIPTIKSTSFRPTLLQLQIYYHMLNHLTTTDEVSIE  329
                       ++Y+TD+KTR S S+P+   +  RPT +QL +Y+ +L+ L    +V IE
Sbjct  163  -----------KIYITDVKTRGSRSLPS--GSQLRPTKIQLMLYHRLLSDLAA-GDVDIE  208

Query  330  TLASRYDLDPQRTFTDAFIAEVGGLNDQFFDALSASEFDPDFIPSPEDAARRQSIRSSGS  389
            ++  RY LDP + F+DAF+A++G L+D+ FD   +S    D                  S
Sbjct  209  SVFERYGLDPDKPFSDAFLAQIGSLHDEGFDDFDSSNSSSD--------------PDDTS  254

Query  390  LPSASQDSTSILLEHNNLSSLWKFMKDQLRLTFLPSPQPSVSVAPSIPSEFQPSMLEPYP  449
             PS+SQDS S LL++N LSSLW  +K +LRLTF P                        P
Sbjct  255  SPSSSQDSLSELLKYNTLSSLWSLLKAELRLTFPP-----------------------GP  291

Query  450  TIISPLLTARYLSSAPTADLHTRVLGSRSFLFDPTSMSSYLSDQMDWWRGNRDPRGVEIM  509
            T +SP+LT  Y            V+GSRSF +DP ++ SYL+D M WWRG R+P GVEI 
Sbjct  292  TSLSPILTVEYRYRG-----TGEVIGSRSFPYDPDTLDSYLADTMAWWRGEREPEGVEIE  346

Query  510  EAWKCRICEFREECSWR  526
            EA+KCR CEF E CSWR
Sbjct  347  EAFKCRYCEFAEVCSWR  363



Lambda      K        H        a         alpha
   0.317    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690414096


Query= TCONS_00002383

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430843 pfam09810, Exo5, Exonuclease V - a 5' deoxyribonucleas...  585     0.0  


>CDD:430843 pfam09810, Exo5, Exonuclease V - a 5' deoxyribonuclease.  Exonuclease 
V is a monomeric 5' deoxyribonuclease that is localized 
in the nucleus. It degrades single-stranded, but not double-stranded, 
DNA from the 5'-end, and the products are dinucleotides, 
except the 3'-terminal tri- and tetranucleotides, 
which are not degraded. The initial hydrolytic cut of exonuclease 
V on the dephosphorylated substrate produces a mixture 
of dinucleoside monophosphates and trinucleoside diphosphates. 
The enzyme is processive in action. Exo5 is specific for 
single-stranded DNA and does not hydrolyze RNA. However, 
Exo5 has the capacity to slide across 5' double-stranded DNA 
or 5' RNA sequences and resume cutting two nucleotides downstream 
of the double-stranded-to-single-stranded junction or 
RNA-to-DNA junction, respectively.
Length=363

 Score = 585 bits (1511),  Expect = 0.0, Method: Composition-based stats.
 Identities = 226/437 (52%), Positives = 275/437 (63%), Gaps = 74/437 (17%)

Query  164  SPIERFRKPPNKAFSVTDLISPAWCELQYWYTLTKHGRKRRTPAMKQGSTIHKTLEDEVH  223
            SP+ERFR PP K  SVTDL+SPAWCELQYWYTLTK GRKRRTPAMKQGS +HK LEDEVH
Sbjct  1    SPLERFRTPPKKPLSVTDLVSPAWCELQYWYTLTKLGRKRRTPAMKQGSKVHKKLEDEVH  60

Query  224  TTVPVEITTKEDALALRLWNVIQGLRTLREYGLTRELEVWGLVDGELVNGVIDQLSYECP  283
            TTVPVE+TTKEDA  LR+WNVIQGLRTLRE GLTRELEVWG VDGELVNGVID+LSYECP
Sbjct  61   TTVPVEVTTKEDAWGLRIWNVIQGLRTLRETGLTRELEVWGFVDGELVNGVIDELSYECP  120

Query  284  DPELEATAATYYADVEASRAVMPEYQMSLTDYLLAPSQGGKRLSEMTWKDEPDEHVEDAP  343
            DPELE       AD  +S A +P+ QMS+TDY L+ S+  KR                  
Sbjct  121  DPELEEELLENGADKGSSIAPLPKDQMSITDYFLSSSRPSKR------------------  162

Query  344  STESSEAFNIPRVYLTDIKTRASGSIPTIKSTSFRPTLLQLQIYYHMLNHLTTTDEVSIE  403
                       ++Y+TD+KTR S S+P+   +  RPT +QL +Y+ +L+ L    +V IE
Sbjct  163  -----------KIYITDVKTRGSRSLPS--GSQLRPTKIQLMLYHRLLSDLAA-GDVDIE  208

Query  404  TLASRYDLDPQRTFTDAFIAEVGGLNDQFFDALSASEFDPDFIPSPEDAARRQSIRSSGS  463
            ++  RY LDP + F+DAF+A++G L+D+ FD   +S    D                  S
Sbjct  209  SVFERYGLDPDKPFSDAFLAQIGSLHDEGFDDFDSSNSSSD--------------PDDTS  254

Query  464  LPSASQDSTSILLEHNNLSSLWKFMKDQLRLTFLPSPQPSVSVAPSIPSEFQPSMLEPYP  523
             PS+SQDS S LL++N LSSLW  +K +LRLTF P                        P
Sbjct  255  SPSSSQDSLSELLKYNTLSSLWSLLKAELRLTFPP-----------------------GP  291

Query  524  TIISPLLTARYLSSAPTADLHTRVLGSRSFLFDPTSMSSYLSDQMDWWRGNRDPRGVEIM  583
            T +SP+LT  Y            V+GSRSF +DP ++ SYL+D M WWRG R+P GVEI 
Sbjct  292  TSLSPILTVEYRYRG-----TGEVIGSRSFPYDPDTLDSYLADTMAWWRGEREPEGVEIE  346

Query  584  EAWKCRICEFREECSWR  600
            EA+KCR CEF E CSWR
Sbjct  347  EAFKCRYCEFAEVCSWR  363



Lambda      K        H        a         alpha
   0.314    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790552412


Query= TCONS_00002384

Length=624
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430843 pfam09810, Exo5, Exonuclease V - a 5' deoxyribonucleas...  585     0.0  


>CDD:430843 pfam09810, Exo5, Exonuclease V - a 5' deoxyribonuclease.  Exonuclease 
V is a monomeric 5' deoxyribonuclease that is localized 
in the nucleus. It degrades single-stranded, but not double-stranded, 
DNA from the 5'-end, and the products are dinucleotides, 
except the 3'-terminal tri- and tetranucleotides, 
which are not degraded. The initial hydrolytic cut of exonuclease 
V on the dephosphorylated substrate produces a mixture 
of dinucleoside monophosphates and trinucleoside diphosphates. 
The enzyme is processive in action. Exo5 is specific for 
single-stranded DNA and does not hydrolyze RNA. However, 
Exo5 has the capacity to slide across 5' double-stranded DNA 
or 5' RNA sequences and resume cutting two nucleotides downstream 
of the double-stranded-to-single-stranded junction or 
RNA-to-DNA junction, respectively.
Length=363

 Score = 585 bits (1511),  Expect = 0.0, Method: Composition-based stats.
 Identities = 226/437 (52%), Positives = 275/437 (63%), Gaps = 74/437 (17%)

Query  167  SPIERFRKPPNKAFSVTDLISPAWCELQYWYTLTKHGRKRRTPAMKQGSTIHKTLEDEVH  226
            SP+ERFR PP K  SVTDL+SPAWCELQYWYTLTK GRKRRTPAMKQGS +HK LEDEVH
Sbjct  1    SPLERFRTPPKKPLSVTDLVSPAWCELQYWYTLTKLGRKRRTPAMKQGSKVHKKLEDEVH  60

Query  227  TTVPVEITTKEDALALRLWNVIQGLRTLREYGLTRELEVWGLVDGELVNGVIDQLSYECP  286
            TTVPVE+TTKEDA  LR+WNVIQGLRTLRE GLTRELEVWG VDGELVNGVID+LSYECP
Sbjct  61   TTVPVEVTTKEDAWGLRIWNVIQGLRTLRETGLTRELEVWGFVDGELVNGVIDELSYECP  120

Query  287  DPELEATAATYYADVEASRAVMPEYQMSLTDYLLAPSQGGKRLSEMTWKDEPDEHVEDAP  346
            DPELE       AD  +S A +P+ QMS+TDY L+ S+  KR                  
Sbjct  121  DPELEEELLENGADKGSSIAPLPKDQMSITDYFLSSSRPSKR------------------  162

Query  347  STESSEAFNIPRVYLTDIKTRASGSIPTIKSTSFRPTLLQLQIYYHMLNHLTTTDEVSIE  406
                       ++Y+TD+KTR S S+P+   +  RPT +QL +Y+ +L+ L    +V IE
Sbjct  163  -----------KIYITDVKTRGSRSLPS--GSQLRPTKIQLMLYHRLLSDLAA-GDVDIE  208

Query  407  TLASRYDLDPQRTFTDAFIAEVGGLNDQFFDALSASEFDPDFIPSPEDAARRQSIRSSGS  466
            ++  RY LDP + F+DAF+A++G L+D+ FD   +S    D                  S
Sbjct  209  SVFERYGLDPDKPFSDAFLAQIGSLHDEGFDDFDSSNSSSD--------------PDDTS  254

Query  467  LPSASQDSTSILLEHNNLSSLWKFMKDQLRLTFLPSPQPSVSVAPSIPSEFQPSMLEPYP  526
             PS+SQDS S LL++N LSSLW  +K +LRLTF P                        P
Sbjct  255  SPSSSQDSLSELLKYNTLSSLWSLLKAELRLTFPP-----------------------GP  291

Query  527  TIISPLLTARYLSSAPTADLHTRVLGSRSFLFDPTSMSSYLSDQMDWWRGNRDPRGVEIM  586
            T +SP+LT  Y            V+GSRSF +DP ++ SYL+D M WWRG R+P GVEI 
Sbjct  292  TSLSPILTVEYRYRG-----TGEVIGSRSFPYDPDTLDSYLADTMAWWRGEREPEGVEIE  346

Query  587  EAWKCRICEFREECSWR  603
            EA+KCR CEF E CSWR
Sbjct  347  EAFKCRYCEFAEVCSWR  363



Lambda      K        H        a         alpha
   0.314    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 795035696


Query= TCONS_00002385

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462524 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3). ...  335     2e-113
CDD:461943 pfam06544, DUF1115, Protein of unknown function (DUF11...  207     6e-65 


>CDD:462524 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3).  Pre-mRNA 
processing factor 3 (PRP3) is a U4/U6-associated splicing 
factor. The human PRP3 has been implicated in autosomal retinitis 
pigmentosa.
Length=219

 Score = 335 bits (862),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 136/222 (61%), Positives = 160/222 (72%), Gaps = 9/222 (4%)

Query  201  NPYFDPSLGPKATIAKPRQSRQLIFNQKGKYIQQAAALRRQAQLEDMKRRIAERARQAGI  260
            NPYFDP L  K    K R+ R L FN+KGKYI+QA  LRR+AQLE++K+RIAE AR+AG+
Sbjct  1    NPYFDPRLSAKP---KRRKRRSLKFNEKGKYIKQAERLRRKAQLEELKKRIAEEARKAGL  57

Query  261  DEDLDV----EKAFLVPAPPAIEWWDEGLVNGNDY--SAIDDERNLKIDTPDSIITLYVQ  314
              D D+     K F    PP IEWWDE  +    Y    IDD+ NL I+  DS IT YVQ
Sbjct  58   LPDTDLAEKAPKKFKDEVPPDIEWWDEPYLPDGSYYDDLIDDKYNLDIEDEDSPITNYVQ  117

Query  315  HPVLLEPPQEKHMPGQKPMYLTPKEQAKIRRQRRMADLKEQQAKIRLGLEPAPPPKVKKS  374
            HPV ++PPQEK+ P  KP+YLT KEQ K+RRQRR   LKE+Q KIRLGLEP PPPKVK S
Sbjct  118  HPVPIKPPQEKNKPPPKPLYLTKKEQKKLRRQRRKEALKEKQDKIRLGLEPPPPPKVKLS  177

Query  375  NLMRVLGEEAVKDPTAVEARVNREIAERREKHEATNEARKLT  416
            NLMRVLG EAV+DPT VEARV R++AER++KHE  NE RKLT
Sbjct  178  NLMRVLGNEAVQDPTKVEARVRRQMAERKQKHEEANEERKLT  219


>CDD:461943 pfam06544, DUF1115, Protein of unknown function (DUF1115).  This 
family represents the C-terminus of hypothetical eukaryotic 
proteins of unknown function.
Length=135

 Score = 207 bits (528),  Expect = 6e-65, Method: Composition-based stats.
 Identities = 68/144 (47%), Positives = 94/144 (65%), Gaps = 9/144 (6%)

Query  439  SVYRIDSLANGRHRFKVSKNAEQNALTGVCIMHPRFNLVIVEGGAHSITNYRKLMLNRID  498
            +V+RI SL+N +HRFK+ KNA+Q  LTG CI+ P F LV+VEGG  SI  Y+KLML RI 
Sbjct  1    AVFRIKSLSNPKHRFKIDKNAKQLGLTGFCILGPPFGLVVVEGGEKSIKKYKKLMLRRIK  60

Query  499  WTENAGPNSVREGNREASASWLSAEDEKTGALKDLSSNTCSLLWEGQAKSRSFRKWLGAR  558
            WTEN  P+   E  +E +  W + ED +         N C L+WEG+ K R+FRKW   +
Sbjct  61   WTEN--PHEDFEAMKEITFEWDNDEDNEGE------DNKCELVWEGEVKERAFRKW-KFK  111

Query  559  VCETDSQAKDVLARAKMENFWVLA  582
            VCET+ +A++ L +  +E++W LA
Sbjct  112  VCETEGEAREFLKKHGVEHYWDLA  135



Lambda      K        H        a         alpha
   0.312    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 744225144


Query= TCONS_00002386

Length=1680
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain...  350     5e-107
CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain...  259     3e-80 
CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain...  138     5e-38 
CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain...  80.8    2e-16 
CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain...  70.5    6e-15 


>CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 5, represents the discontinuous 
cleft domain that is required to from the central 
cleft or channel where the DNA is bound.
Length=516

 Score = 350 bits (899),  Expect = 5e-107, Method: Composition-based stats.
 Identities = 171/643 (27%), Positives = 261/643 (41%), Gaps = 139/643 (22%)

Query  999   GIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVRESSDGSIVQ  1058
             G+ PQE++FH M GREGLIDTAVKT+ SGYLQR L+K +E L   YD +VR +S G IVQ
Sbjct  1     GLTPQEFFFHTMGGREGLIDTAVKTAESGYLQRRLVKALEDLVVTYDDTVR-NSGGEIVQ  59

Query  1059  FLYGEDGLDITKQVHLKDFDFLTSNYVSIMQSVNLTSDFHNLEKDEVTAWHKDAMKKVRK  1118
             FLYGEDGLD  K      F    S+     +  N   D   L  +   ++ K+ + +  K
Sbjct  60    FLYGEDGLDPLKIEKQGRFTIEFSDLKLEDKFKNDLLDDLLLLSEFSLSYKKEILVRDSK  119

Query  1119  TGKVDAMDPVLSVYHPGGNLGSTSEAFSQALKKYEDTNPDKLL-RDKKKNIDGLISKKAF  1177
              G+                   + EA  +A   +E      L  +  +  +    + KAF
Sbjct  120   LGRD----------------RLSKEAQERATLLFELLLKSGLESKRVRSELT--CNSKAF  161

Query  1178  N---TLMNMKYLKSVVDPGEAVGIVASQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLR  1234
                     + Y +S+++PGEAVGI+A+QSIGEP TQMTLNTFH AG ++KNVTLG+PRL+
Sbjct  162   VCLLCYGRLLYQQSLINPGEAVGIIAAQSIGEPGTQMTLNTFHFAGVASKNVTLGVPRLK  221

Query  1235  EIVMTASAHIMTPTMTLILNEELSKEHSER--FAKAISKLSIAEVIDKVKVKERIATAGS  1292
             EI+   S +I +P++T+ L +E+ +E  +      AI K+++  V++  ++   +     
Sbjct  222   EIINV-SKNIKSPSLTVYLFDEVGRELEKAKKVYGAIEKVTLGSVVESGEI---LYDPDP  277

Query  1293  R-----FKVYDVEIALFPAEEYTKEYAITTKDVQNTLQNKFIPKLVKLTRAELKRRNDEK  1347
                     V  V       +E T          +  +  +    L+ L    LK  N   
Sbjct  278   FNTPIISDVKGVVKFFDIIDEVT---------NEEEIDPETG--LLILVIRLLKILNKS-  325

Query  1348  SLKSFSTAQPEIGVSVGVIEEGPRGPDREVEPAQDDDEDDEDDAKRARSGQNRSNQVSYE  1407
                                                                 +  +    
Sbjct  326   --------------------------------------------------IKKVVKSEVI  335

Query  1408  GPEQEEIDMVRQQDAVEDDEDEDESGEDRRQDSDVDMDDSDEETDEETKDTKLREEDIKG  1467
                        +  A+                                            
Sbjct  336   PRSIRNKVDEGRDIAI---------------------------------GEITAFIIKI-  361

Query  1468  KYGEVTQFKFNPSKGTSCVVQLQYDISTPKLLLLPLVEEAARSAVIQSIPGLGNCTYVEA  1527
                          + T  + ++          L  LV     +  ++ IPG+      E 
Sbjct  362   --------SKKIRQDTGGLRRVDELFMEEDPKLAILVASLLGNITLRGIPGIKRILVNED  413

Query  1528  DPVKGEPAHVI-TEGVNLLAMRDYQDIIKPHSIYTNSIHHMLMLYGVEAARASIVREMSD  1586
             D  K EP  V+ TEGVNLL +      +    I +N IH +L + G+EAAR +++ E+ +
Sbjct  414   DKGKVEPDWVLETEGVNLLRVLLVPGFVDAGRILSNDIHEILEILGIEAARNALLNEIRN  473

Query  1587  VFQGHSISVDNRHLNLIGDVMTQSGGFRAFNRNGLVKDSSSPL  1629
             V++   I +++RHL LI D MT+ G   A  R+G+ K   S L
Sbjct  474   VYRFQGIYINDRHLELIADQMTRKGYIMAIGRHGINKAELSAL  516


>CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 2, contains the active 
site. The invariant motif -NADFDGD- binds the active site 
magnesium ion.
Length=166

 Score = 259 bits (664),  Expect = 3e-80, Method: Composition-based stats.
 Identities = 86/179 (48%), Positives = 115/179 (64%), Gaps = 15/179 (8%)

Query  482  GKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPG  541
            GKRV+F+AR+VISPDPN++ +E+GVP+ FAK LT+PE VT +N   ++Q V NGP+ YPG
Sbjct  1    GKRVDFSARTVISPDPNLKLDEVGVPISFAKTLTFPEIVTPYNIKRLRQLVENGPNVYPG  60

Query  542  ATAIENELGQVTNLKFKSLDERTALANQLLAPSNWRMKGARNKKVYRHLTTGDVVLMNRQ  601
            A  I    G   +L+++    +  L  +L               V RH+  GDVVL NRQ
Sbjct  61   ANYIIRINGARRDLRYQ----KRRLDKELEIGD----------IVERHVIDGDVVLFNRQ  106

Query  602  PTLHKPSIMGHKARVLANERVIRMHYANCNTYNADFDGDEMNMHFPQNELARAEAMMLA  660
            P+LH+ SIMGH+ RVL   +  R++ +    YNADFDGDEMN+H PQ+E ARAEA  L 
Sbjct  107  PSLHRLSIMGHRVRVL-PGKTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAEAEELM  164


>CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 3, represents the pore 
domain. The 3' end of RNA is positioned close to this domain. 
The pore delimited by this domain is thought to act as 
a channel through which nucleotides enter the active site and/or 
where the 3' end of the RNA may be extruded during back-tracking.
Length=158

 Score = 138 bits (350),  Expect = 5e-38, Method: Composition-based stats.
 Identities = 60/179 (34%), Positives = 86/179 (48%), Gaps = 22/179 (12%)

Query  665  QYLVATSGKPLRGLIQDHISMGTWFTCRDTFFDEEDYHELLYSCLRPENSHTVTERIQLV  724
              L   +GKP+ G  QD +      T  DTFFD E+  +LL               I L 
Sbjct  1    NILSPQNGKPIIGPSQDMVLGAYLLTREDTFFDREEVMQLLMYG------------IVLP  48

Query  725  EPTLLKP-KRLWTGKQVITTILKNIMPPGRAGLNLKSKSSTPGDRWGEGNEEGTVIFKDG  783
             P +LKP K LWTGKQ  + +L N        +N K K  T  +   E   +  V+  +G
Sbjct  49   HPAILKPIKPLWTGKQTFSRLLPN-------EINPKGKPKTNEEDLCEN--DSYVLINNG  99

Query  784  EMLCGILDKKQIGPTAGGLIDAIHEVYGHTIAGRLISILGRLLTRYLNMRAFTCGIDDL  842
            E++ G++DKK +G + G LI  I++ YG     + +  L +L  RYL    F+ GIDD+
Sbjct  100  ELISGVIDKKTVGKSLGSLIHIIYKEYGPEETAKFLDRLQKLGFRYLTKSGFSIGIDDI  158


>CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 1, represents the clamp 
domain, which a mobile domain involved in positioning the 
DNA, maintenance of the transcription bubble and positioning 
of the nascent RNA strand.
Length=320

 Score = 80.8 bits (200),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 8/100 (8%)

Query  12   ISGIEFGVYSDEDIKSISVKRIHNTPTLDSFNN----PVPGGLYDPALGAWG-DHVCTTC  66
            I  I+FG+ S E+I+  SV  +      +++N     P  GGL D  +G    D+ C TC
Sbjct  4    IKEIQFGIASPEEIRKWSVGEVTKP---ETYNYGSLKPEEGGLLDERMGTIDKDYECETC  60

Query  67   RQNSWSCTGHPGHIELPVRVYNVTFFDQLYRLLRAQCVYC  106
             +    C GH GHIEL   V+++ FF +  ++L   C YC
Sbjct  61   GKKKKDCPGHFGHIELAKPVFHIGFFKKTLKILECVCKYC  100


>CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 4, represents the funnel 
domain. The funnel contain the binding site for some elongation 
factors.
Length=108

 Score = 70.5 bits (173),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 44/91 (48%), Gaps = 0/91 (0%)

Query  902  LDSVSNARTAKLSTEITQACLPKGLAKPFPWNQMQSMTISGAKGSSVNANLISCNLGQQV  961
            L+    A    +  +              P N +  M  SGAKGS +N + I+   GQQ 
Sbjct  18   LEESFEALINNILNKARDPAGNIASKSLDPNNSIYMMADSGAKGSIINISQIAGCRGQQN  77

Query  962  LEGRRVPVMISGKTLPSFRAFDTHPMAGGYV  992
            +EG+R+P   SG+TLP F+  D  P + G+V
Sbjct  78   VEGKRIPFGFSGRTLPHFKKDDEGPESRGFV  108



Lambda      K        H        a         alpha
   0.316    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2112971920


Query= TCONS_00002387

Length=1481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain...  348     6e-107
CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain...  258     5e-80 
CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain...  137     7e-38 
CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain...  70.1    7e-15 


>CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 5, represents the discontinuous 
cleft domain that is required to from the central 
cleft or channel where the DNA is bound.
Length=516

 Score = 348 bits (894),  Expect = 6e-107, Method: Composition-based stats.
 Identities = 171/643 (27%), Positives = 261/643 (41%), Gaps = 139/643 (22%)

Query  800   GIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVRESSDGSIVQ  859
             G+ PQE++FH M GREGLIDTAVKT+ SGYLQR L+K +E L   YD +VR +S G IVQ
Sbjct  1     GLTPQEFFFHTMGGREGLIDTAVKTAESGYLQRRLVKALEDLVVTYDDTVR-NSGGEIVQ  59

Query  860   FLYGEDGLDITKQVHLKDFDFLTSNYVSIMQSVNLTSDFHNLEKDEVTAWHKDAMKKVRK  919
             FLYGEDGLD  K      F    S+     +  N   D   L  +   ++ K+ + +  K
Sbjct  60    FLYGEDGLDPLKIEKQGRFTIEFSDLKLEDKFKNDLLDDLLLLSEFSLSYKKEILVRDSK  119

Query  920   TGKVDAMDPVLSVYHPGGNLGSTSEAFSQALKKYEDTNPDKLL-RDKKKNIDGLISKKAF  978
              G+                   + EA  +A   +E      L  +  +  +    + KAF
Sbjct  120   LGRD----------------RLSKEAQERATLLFELLLKSGLESKRVRSELT--CNSKAF  161

Query  979   N---TLMNMKYLKSVVDPGEAVGIVASQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLR  1035
                     + Y +S+++PGEAVGI+A+QSIGEP TQMTLNTFH AG ++KNVTLG+PRL+
Sbjct  162   VCLLCYGRLLYQQSLINPGEAVGIIAAQSIGEPGTQMTLNTFHFAGVASKNVTLGVPRLK  221

Query  1036  EIVMTASAHIMTPTMTLILNEELSKEHSER--FAKAISKLSIAEVIDKVKVKERIATAGS  1093
             EI+   S +I +P++T+ L +E+ +E  +      AI K+++  V++  ++   +     
Sbjct  222   EIINV-SKNIKSPSLTVYLFDEVGRELEKAKKVYGAIEKVTLGSVVESGEI---LYDPDP  277

Query  1094  R-----FKVYDVEIALFPAEEYTKEYAITTKDVQNTLQNKFIPKLVKLTRAELKRRNDEK  1148
                     V  V       +E T          +  +  +    L+ L    LK  N   
Sbjct  278   FNTPIISDVKGVVKFFDIIDEVT---------NEEEIDPETG--LLILVIRLLKILNKS-  325

Query  1149  SLKSFSTAQPEIGVSVGVIEEGPRGPDREVEPAQDDDEDDEDDAKRARSGQNRSNQVSYE  1208
                                                                 +  +    
Sbjct  326   --------------------------------------------------IKKVVKSEVI  335

Query  1209  GPEQEEIDMVRQQDAVEDDEDEDESGEDRRQDSDVDMDDSDEETDEETKDTKLREEDIKG  1268
                        +  A+                                            
Sbjct  336   PRSIRNKVDEGRDIAI---------------------------------GEITAFIIKI-  361

Query  1269  KYGEVTQFKFNPSKGTSCVVQLQYDISTPKLLLLPLVEEAARSAVIQSIPGLGNCTYVEA  1328
                          + T  + ++          L  LV     +  ++ IPG+      E 
Sbjct  362   --------SKKIRQDTGGLRRVDELFMEEDPKLAILVASLLGNITLRGIPGIKRILVNED  413

Query  1329  DPVKGEPAHVI-TEGVNLLAMRDYQDIIKPHSIYTNSIHHMLMLYGVEAARASIVREMSD  1387
             D  K EP  V+ TEGVNLL +      +    I +N IH +L + G+EAAR +++ E+ +
Sbjct  414   DKGKVEPDWVLETEGVNLLRVLLVPGFVDAGRILSNDIHEILEILGIEAARNALLNEIRN  473

Query  1388  VFQGHSISVDNRHLNLIGDVMTQSGGFRAFNRNGLVKDSSSPL  1430
             V++   I +++RHL LI D MT+ G   A  R+G+ K   S L
Sbjct  474   VYRFQGIYINDRHLELIADQMTRKGYIMAIGRHGINKAELSAL  516


>CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 2, contains the active 
site. The invariant motif -NADFDGD- binds the active site 
magnesium ion.
Length=166

 Score = 258 bits (662),  Expect = 5e-80, Method: Composition-based stats.
 Identities = 86/179 (48%), Positives = 115/179 (64%), Gaps = 15/179 (8%)

Query  283  GKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPG  342
            GKRV+F+AR+VISPDPN++ +E+GVP+ FAK LT+PE VT +N   ++Q V NGP+ YPG
Sbjct  1    GKRVDFSARTVISPDPNLKLDEVGVPISFAKTLTFPEIVTPYNIKRLRQLVENGPNVYPG  60

Query  343  ATAIENELGQVTNLKFKSLDERTALANQLLAPSNWRMKGARNKKVYRHLTTGDVVLMNRQ  402
            A  I    G   +L+++    +  L  +L               V RH+  GDVVL NRQ
Sbjct  61   ANYIIRINGARRDLRYQ----KRRLDKELEIGD----------IVERHVIDGDVVLFNRQ  106

Query  403  PTLHKPSIMGHKARVLANERVIRMHYANCNTYNADFDGDEMNMHFPQNELARAEAMMLA  461
            P+LH+ SIMGH+ RVL   +  R++ +    YNADFDGDEMN+H PQ+E ARAEA  L 
Sbjct  107  PSLHRLSIMGHRVRVL-PGKTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAEAEELM  164


>CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 3, represents the pore 
domain. The 3' end of RNA is positioned close to this domain. 
The pore delimited by this domain is thought to act as 
a channel through which nucleotides enter the active site and/or 
where the 3' end of the RNA may be extruded during back-tracking.
Length=158

 Score = 137 bits (348),  Expect = 7e-38, Method: Composition-based stats.
 Identities = 60/179 (34%), Positives = 86/179 (48%), Gaps = 22/179 (12%)

Query  466  QYLVATSGKPLRGLIQDHISMGTWFTCRDTFFDEEDYHELLYSCLRPENSHTVTERIQLV  525
              L   +GKP+ G  QD +      T  DTFFD E+  +LL               I L 
Sbjct  1    NILSPQNGKPIIGPSQDMVLGAYLLTREDTFFDREEVMQLLMYG------------IVLP  48

Query  526  EPTLLKP-KRLWTGKQVITTILKNIMPPGRAGLNLKSKSSTPGDRWGEGNEEGTVIFKDG  584
             P +LKP K LWTGKQ  + +L N        +N K K  T  +   E   +  V+  +G
Sbjct  49   HPAILKPIKPLWTGKQTFSRLLPN-------EINPKGKPKTNEEDLCEN--DSYVLINNG  99

Query  585  EMLCGILDKKQIGPTAGGLIDAIHEVYGHTIAGRLISILGRLLTRYLNMRAFTCGIDDL  643
            E++ G++DKK +G + G LI  I++ YG     + +  L +L  RYL    F+ GIDD+
Sbjct  100  ELISGVIDKKTVGKSLGSLIHIIYKEYGPEETAKFLDRLQKLGFRYLTKSGFSIGIDDI  158


>CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 4, represents the funnel 
domain. The funnel contain the binding site for some elongation 
factors.
Length=108

 Score = 70.1 bits (172),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 44/91 (48%), Gaps = 0/91 (0%)

Query  703  LDSVSNARTAKLSTEITQACLPKGLAKPFPWNQMQSMTISGAKGSSVNANLISCNLGQQV  762
            L+    A    +  +              P N +  M  SGAKGS +N + I+   GQQ 
Sbjct  18   LEESFEALINNILNKARDPAGNIASKSLDPNNSIYMMADSGAKGSIINISQIAGCRGQQN  77

Query  763  LEGRRVPVMISGKTLPSFRAFDTHPMAGGYV  793
            +EG+R+P   SG+TLP F+  D  P + G+V
Sbjct  78   VEGKRIPFGFSGRTLPHFKKDDEGPESRGFV  108



Lambda      K        H        a         alpha
   0.315    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1875321484


Query= TCONS_00007712

Length=1631
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain...  350     4e-107
CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain...  259     3e-80 
CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain...  138     4e-38 
CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain...  70.5    6e-15 


>CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 5, represents the discontinuous 
cleft domain that is required to from the central 
cleft or channel where the DNA is bound.
Length=516

 Score = 350 bits (899),  Expect = 4e-107, Method: Composition-based stats.
 Identities = 171/643 (27%), Positives = 261/643 (41%), Gaps = 139/643 (22%)

Query  950   GIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVRESSDGSIVQ  1009
             G+ PQE++FH M GREGLIDTAVKT+ SGYLQR L+K +E L   YD +VR +S G IVQ
Sbjct  1     GLTPQEFFFHTMGGREGLIDTAVKTAESGYLQRRLVKALEDLVVTYDDTVR-NSGGEIVQ  59

Query  1010  FLYGEDGLDITKQVHLKDFDFLTSNYVSIMQSVNLTSDFHNLEKDEVTAWHKDAMKKVRK  1069
             FLYGEDGLD  K      F    S+     +  N   D   L  +   ++ K+ + +  K
Sbjct  60    FLYGEDGLDPLKIEKQGRFTIEFSDLKLEDKFKNDLLDDLLLLSEFSLSYKKEILVRDSK  119

Query  1070  TGKVDAMDPVLSVYHPGGNLGSTSEAFSQALKKYEDTNPDKLL-RDKKKNIDGLISKKAF  1128
              G+                   + EA  +A   +E      L  +  +  +    + KAF
Sbjct  120   LGRD----------------RLSKEAQERATLLFELLLKSGLESKRVRSELT--CNSKAF  161

Query  1129  N---TLMNMKYLKSVVDPGEAVGIVASQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLR  1185
                     + Y +S+++PGEAVGI+A+QSIGEP TQMTLNTFH AG ++KNVTLG+PRL+
Sbjct  162   VCLLCYGRLLYQQSLINPGEAVGIIAAQSIGEPGTQMTLNTFHFAGVASKNVTLGVPRLK  221

Query  1186  EIVMTASAHIMTPTMTLILNEELSKEHSER--FAKAISKLSIAEVIDKVKVKERIATAGS  1243
             EI+   S +I +P++T+ L +E+ +E  +      AI K+++  V++  ++   +     
Sbjct  222   EIINV-SKNIKSPSLTVYLFDEVGRELEKAKKVYGAIEKVTLGSVVESGEI---LYDPDP  277

Query  1244  R-----FKVYDVEIALFPAEEYTKEYAITTKDVQNTLQNKFIPKLVKLTRAELKRRNDEK  1298
                     V  V       +E T          +  +  +    L+ L    LK  N   
Sbjct  278   FNTPIISDVKGVVKFFDIIDEVT---------NEEEIDPETG--LLILVIRLLKILNKS-  325

Query  1299  SLKSFSTAQPEIGVSVGVIEEGPRGPDREVEPAQDDDEDDEDDAKRARSGQNRSNQVSYE  1358
                                                                 +  +    
Sbjct  326   --------------------------------------------------IKKVVKSEVI  335

Query  1359  GPEQEEIDMVRQQDAVEDDEDEDESGEDRRQDSDVDMDDSDEETDEETKDTKLREEDIKG  1418
                        +  A+                                            
Sbjct  336   PRSIRNKVDEGRDIAI---------------------------------GEITAFIIKI-  361

Query  1419  KYGEVTQFKFNPSKGTSCVVQLQYDISTPKLLLLPLVEEAARSAVIQSIPGLGNCTYVEA  1478
                          + T  + ++          L  LV     +  ++ IPG+      E 
Sbjct  362   --------SKKIRQDTGGLRRVDELFMEEDPKLAILVASLLGNITLRGIPGIKRILVNED  413

Query  1479  DPVKGEPAHVI-TEGVNLLAMRDYQDIIKPHSIYTNSIHHMLMLYGVEAARASIVREMSD  1537
             D  K EP  V+ TEGVNLL +      +    I +N IH +L + G+EAAR +++ E+ +
Sbjct  414   DKGKVEPDWVLETEGVNLLRVLLVPGFVDAGRILSNDIHEILEILGIEAARNALLNEIRN  473

Query  1538  VFQGHSISVDNRHLNLIGDVMTQSGGFRAFNRNGLVKDSSSPL  1580
             V++   I +++RHL LI D MT+ G   A  R+G+ K   S L
Sbjct  474   VYRFQGIYINDRHLELIADQMTRKGYIMAIGRHGINKAELSAL  516


>CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 2, contains the active 
site. The invariant motif -NADFDGD- binds the active site 
magnesium ion.
Length=166

 Score = 259 bits (664),  Expect = 3e-80, Method: Composition-based stats.
 Identities = 86/179 (48%), Positives = 115/179 (64%), Gaps = 15/179 (8%)

Query  433  GKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPG  492
            GKRV+F+AR+VISPDPN++ +E+GVP+ FAK LT+PE VT +N   ++Q V NGP+ YPG
Sbjct  1    GKRVDFSARTVISPDPNLKLDEVGVPISFAKTLTFPEIVTPYNIKRLRQLVENGPNVYPG  60

Query  493  ATAIENELGQVTNLKFKSLDERTALANQLLAPSNWRMKGARNKKVYRHLTTGDVVLMNRQ  552
            A  I    G   +L+++    +  L  +L               V RH+  GDVVL NRQ
Sbjct  61   ANYIIRINGARRDLRYQ----KRRLDKELEIGD----------IVERHVIDGDVVLFNRQ  106

Query  553  PTLHKPSIMGHKARVLANERVIRMHYANCNTYNADFDGDEMNMHFPQNELARAEAMMLA  611
            P+LH+ SIMGH+ RVL   +  R++ +    YNADFDGDEMN+H PQ+E ARAEA  L 
Sbjct  107  PSLHRLSIMGHRVRVL-PGKTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAEAEELM  164


>CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 3, represents the pore 
domain. The 3' end of RNA is positioned close to this domain. 
The pore delimited by this domain is thought to act as 
a channel through which nucleotides enter the active site and/or 
where the 3' end of the RNA may be extruded during back-tracking.
Length=158

 Score = 138 bits (350),  Expect = 4e-38, Method: Composition-based stats.
 Identities = 60/179 (34%), Positives = 86/179 (48%), Gaps = 22/179 (12%)

Query  616  QYLVATSGKPLRGLIQDHISMGTWFTCRDTFFDEEDYHELLYSCLRPENSHTVTERIQLV  675
              L   +GKP+ G  QD +      T  DTFFD E+  +LL               I L 
Sbjct  1    NILSPQNGKPIIGPSQDMVLGAYLLTREDTFFDREEVMQLLMYG------------IVLP  48

Query  676  EPTLLKP-KRLWTGKQVITTILKNIMPPGRAGLNLKSKSSTPGDRWGEGNEEGTVIFKDG  734
             P +LKP K LWTGKQ  + +L N        +N K K  T  +   E   +  V+  +G
Sbjct  49   HPAILKPIKPLWTGKQTFSRLLPN-------EINPKGKPKTNEEDLCEN--DSYVLINNG  99

Query  735  EMLCGILDKKQIGPTAGGLIDAIHEVYGHTIAGRLISILGRLLTRYLNMRAFTCGIDDL  793
            E++ G++DKK +G + G LI  I++ YG     + +  L +L  RYL    F+ GIDD+
Sbjct  100  ELISGVIDKKTVGKSLGSLIHIIYKEYGPEETAKFLDRLQKLGFRYLTKSGFSIGIDDI  158


>CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 4, represents the funnel 
domain. The funnel contain the binding site for some elongation 
factors.
Length=108

 Score = 70.5 bits (173),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 44/91 (48%), Gaps = 0/91 (0%)

Query  853  LDSVSNARTAKLSTEITQACLPKGLAKPFPWNQMQSMTISGAKGSSVNANLISCNLGQQV  912
            L+    A    +  +              P N +  M  SGAKGS +N + I+   GQQ 
Sbjct  18   LEESFEALINNILNKARDPAGNIASKSLDPNNSIYMMADSGAKGSIINISQIAGCRGQQN  77

Query  913  LEGRRVPVMISGKTLPSFRAFDTHPMAGGYV  943
            +EG+R+P   SG+TLP F+  D  P + G+V
Sbjct  78   VEGKRIPFGFSGRTLPHFKKDDEGPESRGFV  108



Lambda      K        H        a         alpha
   0.316    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2078865784


Query= TCONS_00007713

Length=375


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00007714

Length=1384


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1770307600


Query= TCONS_00002388

Length=731


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 926931824


Query= TCONS_00002389

Length=1488


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1884820218


Query= TCONS_00002390

Length=375


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00007715

Length=1384


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1770307600


Query= TCONS_00002391

Length=1643


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2095149328


Query= TCONS_00002392

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00002393

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00007716

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00007717

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00002394

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427692 pfam04072, LCM, Leucine carboxyl methyltransferase. Fa...  66.5    2e-13


>CDD:427692 pfam04072, LCM, Leucine carboxyl methyltransferase.  Family of 
leucine carboxyl methyltransferases EC:2.1.1.-. This family 
may need divides a the full alignment contains a significantly 
shorter mouse sequence.
Length=188

 Score = 66.5 bits (163),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 69/245 (28%), Gaps = 86/245 (35%)

Query  49   VQGTDNDASVSRLSAVEIGYLEDPFAKVLTPPGSGT--------------------RRLP  88
            +      A  SR  A     ++DPFA+ L                            R P
Sbjct  2    LGVAAARALESRRPAD--PLIDDPFAEPLVRAAGLDLLTRRADGELDPAKDDPGKWARFP  59

Query  89   IINRGTYVRTTAIDRLVARFLEGPSQTKKQIISLGAGSDTRVFRLLSSRSSASSSDLIYH  148
             +N G  VRT   D  +   L       +Q++ LGAG DTR +           +     
Sbjct  60   GLNDGIAVRTRFFDDFLLAALAAAG--IRQVVILGAGLDTRAY------RLPWPAGTRVF  111

Query  149  EIDFSANTAAKIKFIRAAPLLQRTLGLGSAQNVAIPDSGDALHSPTYHLH--PVDLRT--  204
            E+D       K + +     L                       P  H    PVDLR   
Sbjct  112  EVDQPDVLEFKRETLAELGAL-----------------------PPAHRRYVPVDLRDDD  148

Query  205  ----LAASGSATTSRSPSSPNPAEKDQPPCPLQGVDPTLPTLLISECCLVYLSPREAADV  260
                L A+                         G DP  PT  ++E  L YL P     +
Sbjct  149  WPEALRAA-------------------------GFDPEQPTAWLAEGLLYYLPPEAQDAL  183

Query  261  VDYFT  265
            +D   
Sbjct  184  LDTIA  188



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00007718

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00002395

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00007719

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427692 pfam04072, LCM, Leucine carboxyl methyltransferase. Fa...  66.5    2e-13


>CDD:427692 pfam04072, LCM, Leucine carboxyl methyltransferase.  Family of 
leucine carboxyl methyltransferases EC:2.1.1.-. This family 
may need divides a the full alignment contains a significantly 
shorter mouse sequence.
Length=188

 Score = 66.5 bits (163),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 69/245 (28%), Gaps = 86/245 (35%)

Query  49   VQGTDNDASVSRLSAVEIGYLEDPFAKVLTPPGSGT--------------------RRLP  88
            +      A  SR  A     ++DPFA+ L                            R P
Sbjct  2    LGVAAARALESRRPAD--PLIDDPFAEPLVRAAGLDLLTRRADGELDPAKDDPGKWARFP  59

Query  89   IINRGTYVRTTAIDRLVARFLEGPSQTKKQIISLGAGSDTRVFRLLSSRSSASSSDLIYH  148
             +N G  VRT   D  +   L       +Q++ LGAG DTR +           +     
Sbjct  60   GLNDGIAVRTRFFDDFLLAALAAAG--IRQVVILGAGLDTRAY------RLPWPAGTRVF  111

Query  149  EIDFSANTAAKIKFIRAAPLLQRTLGLGSAQNVAIPDSGDALHSPTYHLH--PVDLRT--  204
            E+D       K + +     L                       P  H    PVDLR   
Sbjct  112  EVDQPDVLEFKRETLAELGAL-----------------------PPAHRRYVPVDLRDDD  148

Query  205  ----LAASGSATTSRSPSSPNPAEKDQPPCPLQGVDPTLPTLLISECCLVYLSPREAADV  260
                L A+                         G DP  PT  ++E  L YL P     +
Sbjct  149  WPEALRAA-------------------------GFDPEQPTAWLAEGLLYYLPPEAQDAL  183

Query  261  VDYFT  265
            +D   
Sbjct  184  LDTIA  188



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00002396

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427547 pfam03856, SUN, Beta-glucosidase (SUN family). Members...  371     6e-129


>CDD:427547 pfam03856, SUN, Beta-glucosidase (SUN family).  Members of this 
family include Nca3, Sun4 and Sim1. This is a family of yeast 
proteins, involved in a diverse set of functions (DNA replication, 
aging, mitochondrial biogenesis and cell septation). 
BGLA from Candida wickerhamii has been characterized as 
a Beta-glucosidase EC:3.2.1.21.
Length=244

 Score = 371 bits (956),  Expect = 6e-129, Method: Composition-based stats.
 Identities = 120/266 (45%), Positives = 143/266 (54%), Gaps = 36/266 (14%)

Query  49   KRGGKCQ-FPTDAGLVAVTPNMKNAGWAMSPD-----QACEPGNYCPYACPPGQVSMQWD  102
                 C  FP+D G VAV       GWA   D     Q C PG+YC YACPPG    QW 
Sbjct  1    DGKIDCSEFPSDYGAVAVDWLGL-GGWAGIQDVDGSGQPCTPGSYCSYACPPGYQKTQW-  58

Query  103  PEATSYSYPKSMNGGLYCDKNGQIKKPFPD-KPYCQDGTGAVGAKNKCSKQVAICQTVLP  161
            P A    YP S  GGLYC+KNG+++K  PD KP C+DG G V   NK  K VA C+T  P
Sbjct  59   PSA--QGYPGSSVGGLYCNKNGKLEKTNPDSKPLCEDGAGTVSVVNKLGKNVAFCRTDYP  116

Query  162  GNEAMLIPTLVE--DTATLAVPDLSY---WC--ETAAHFYINPPGYDTETACVWGTSAKP  214
            GNE MLIPT+V    T  LAVPD  Y   W    T+A +Y+NPPG   E  CVWG+S KP
Sbjct  117  GNENMLIPTVVGPGSTQPLAVPDADYYYKWQGKSTSAQYYVNPPGVSVEDGCVWGSSGKP  176

Query  215  IGNWSPYVAGANTDGDGNTFVKIGWNPIYLEPTTPFRDVVPDFGIEIECEGDGCNGLPCK  274
            +GNW+PYVAGA  D +G T++ I  N        P  +  P+F ++I C+   C G PC 
Sbjct  177  VGNWAPYVAGAGYDDNGITYLSIFPN--------PTNNAKPNFNVKIVCDDGDCVGGPCS  228

Query  275  IDPAVNAVNEMIGSTSVGAGGATFCV  300
             D          G  S G GGA  C 
Sbjct  229  YDN---------GQYSGG-GGADGCT  244



Lambda      K        H        a         alpha
   0.310    0.125    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00007720

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427547 pfam03856, SUN, Beta-glucosidase (SUN family). Members...  371     6e-129


>CDD:427547 pfam03856, SUN, Beta-glucosidase (SUN family).  Members of this 
family include Nca3, Sun4 and Sim1. This is a family of yeast 
proteins, involved in a diverse set of functions (DNA replication, 
aging, mitochondrial biogenesis and cell septation). 
BGLA from Candida wickerhamii has been characterized as 
a Beta-glucosidase EC:3.2.1.21.
Length=244

 Score = 371 bits (956),  Expect = 6e-129, Method: Composition-based stats.
 Identities = 120/266 (45%), Positives = 143/266 (54%), Gaps = 36/266 (14%)

Query  49   KRGGKCQ-FPTDAGLVAVTPNMKNAGWAMSPD-----QACEPGNYCPYACPPGQVSMQWD  102
                 C  FP+D G VAV       GWA   D     Q C PG+YC YACPPG    QW 
Sbjct  1    DGKIDCSEFPSDYGAVAVDWLGL-GGWAGIQDVDGSGQPCTPGSYCSYACPPGYQKTQW-  58

Query  103  PEATSYSYPKSMNGGLYCDKNGQIKKPFPD-KPYCQDGTGAVGAKNKCSKQVAICQTVLP  161
            P A    YP S  GGLYC+KNG+++K  PD KP C+DG G V   NK  K VA C+T  P
Sbjct  59   PSA--QGYPGSSVGGLYCNKNGKLEKTNPDSKPLCEDGAGTVSVVNKLGKNVAFCRTDYP  116

Query  162  GNEAMLIPTLVE--DTATLAVPDLSY---WC--ETAAHFYINPPGYDTETACVWGTSAKP  214
            GNE MLIPT+V    T  LAVPD  Y   W    T+A +Y+NPPG   E  CVWG+S KP
Sbjct  117  GNENMLIPTVVGPGSTQPLAVPDADYYYKWQGKSTSAQYYVNPPGVSVEDGCVWGSSGKP  176

Query  215  IGNWSPYVAGANTDGDGNTFVKIGWNPIYLEPTTPFRDVVPDFGIEIECEGDGCNGLPCK  274
            +GNW+PYVAGA  D +G T++ I  N        P  +  P+F ++I C+   C G PC 
Sbjct  177  VGNWAPYVAGAGYDDNGITYLSIFPN--------PTNNAKPNFNVKIVCDDGDCVGGPCS  228

Query  275  IDPAVNAVNEMIGSTSVGAGGATFCV  300
             D          G  S G GGA  C 
Sbjct  229  YDN---------GQYSGG-GGADGCT  244



Lambda      K        H        a         alpha
   0.310    0.125    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00007721

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.296    0.109    0.278    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00007722

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.296    0.109    0.278    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00002398

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427547 pfam03856, SUN, Beta-glucosidase (SUN family). Members...  371     6e-129


>CDD:427547 pfam03856, SUN, Beta-glucosidase (SUN family).  Members of this 
family include Nca3, Sun4 and Sim1. This is a family of yeast 
proteins, involved in a diverse set of functions (DNA replication, 
aging, mitochondrial biogenesis and cell septation). 
BGLA from Candida wickerhamii has been characterized as 
a Beta-glucosidase EC:3.2.1.21.
Length=244

 Score = 371 bits (956),  Expect = 6e-129, Method: Composition-based stats.
 Identities = 120/266 (45%), Positives = 143/266 (54%), Gaps = 36/266 (14%)

Query  49   KRGGKCQ-FPTDAGLVAVTPNMKNAGWAMSPD-----QACEPGNYCPYACPPGQVSMQWD  102
                 C  FP+D G VAV       GWA   D     Q C PG+YC YACPPG    QW 
Sbjct  1    DGKIDCSEFPSDYGAVAVDWLGL-GGWAGIQDVDGSGQPCTPGSYCSYACPPGYQKTQW-  58

Query  103  PEATSYSYPKSMNGGLYCDKNGQIKKPFPD-KPYCQDGTGAVGAKNKCSKQVAICQTVLP  161
            P A    YP S  GGLYC+KNG+++K  PD KP C+DG G V   NK  K VA C+T  P
Sbjct  59   PSA--QGYPGSSVGGLYCNKNGKLEKTNPDSKPLCEDGAGTVSVVNKLGKNVAFCRTDYP  116

Query  162  GNEAMLIPTLVE--DTATLAVPDLSY---WC--ETAAHFYINPPGYDTETACVWGTSAKP  214
            GNE MLIPT+V    T  LAVPD  Y   W    T+A +Y+NPPG   E  CVWG+S KP
Sbjct  117  GNENMLIPTVVGPGSTQPLAVPDADYYYKWQGKSTSAQYYVNPPGVSVEDGCVWGSSGKP  176

Query  215  IGNWSPYVAGANTDGDGNTFVKIGWNPIYLEPTTPFRDVVPDFGIEIECEGDGCNGLPCK  274
            +GNW+PYVAGA  D +G T++ I  N        P  +  P+F ++I C+   C G PC 
Sbjct  177  VGNWAPYVAGAGYDDNGITYLSIFPN--------PTNNAKPNFNVKIVCDDGDCVGGPCS  228

Query  275  IDPAVNAVNEMIGSTSVGAGGATFCV  300
             D          G  S G GGA  C 
Sbjct  229  YDN---------GQYSGG-GGADGCT  244



Lambda      K        H        a         alpha
   0.310    0.125    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00002399

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00002400

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00007723

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372989 pfam14269, Arylsulfotran_2, Arylsulfotransferase (ASST)    214     1e-66
CDD:399139 pfam05935, Arylsulfotrans, Arylsulfotransferase (ASST)...  103     8e-25


>CDD:372989 pfam14269, Arylsulfotran_2, Arylsulfotransferase (ASST).  
Length=301

 Score = 214 bits (548),  Expect = 1e-66, Method: Composition-based stats.
 Identities = 102/301 (34%), Positives = 158/301 (52%), Gaps = 16/301 (5%)

Query  2    HVCKYKGANHLCFFQGIQQNGYCRGHGVIMDNRYRIVKTVTPGGGIAS---------SDM  52
            H  K      + F++G    G+  G   I+D+ Y  + TVT  G   +          D 
Sbjct  1    HPQKLDDGPVITFWEGDGNPGFGYGTLTILDSSYEEIWTVTLPGNFVTPDHETFDSYIDH  60

Query  53   HEFRLVNDGKTALMTVYQQRQFDMSLWNLRMGMGWLMESIFQEIDVETNQVLFEWRSLDH  112
            HE  + +DG T  +T Y   Q D++        GW+++ +  EID+ETN+VLF W +L+H
Sbjct  61   HESEITDDG-TIWVTAYNVTQADLTSVGGPRD-GWVLDGLIYEIDIETNEVLFRWSALEH  118

Query  113  VDPSVSYTYPSSTDTSGTGFEPRSPWDYFHINSVDKNKDGDYLISSRHTSCIYKISGKDG  172
            VD  +             G   + PWDYFH+NSV K  DGDYLIS R+   ++ I   +G
Sbjct  119  VDQ-IPLELSVQPLG-DFGGSEKFPWDYFHLNSVPKFGDGDYLISLRYYCSLFLIRPSNG  176

Query  173  SILWRLHGANPSFKNI--NFSFSQQHDARWLGENATHTLLSLYNNGYNGYNQTHPYSSGM  230
             ++W+L+G       +  N +FS QHDAR++ +     ++SL+NN    +N   P ++G+
Sbjct  177  KVMWQLNGPTGGDFELGPNSTFSYQHDARFVNQTEDKIVISLFNNANTPFNGRAP-TTGL  235

Query  231  IILIDHVNNTATQIREYKPLNDDMLSSSQGNMQVLPNRNVFIGWGNNAYISEHDEQGKLV  290
            I+ +D  N T T +R+     D + S SQG+ Q+LPN +V +G G+   I E+D  GK+V
Sbjct  236  ILDVDLQNKTVTLLRKLWDAEDPIHSVSQGSYQLLPNGHVLVGHGSIGRIEEYDANGKIV  295

Query  291  F  291
             
Sbjct  296  M  296


>CDD:399139 pfam05935, Arylsulfotrans, Arylsulfotransferase (ASST).  This 
family consists of several bacterial Arylsulfotransferase proteins. 
Arylsulfotransferase (ASST) transfers a sulfate group 
from phenolic sulfate esters to a phenolic acceptor substrate.
Length=368

 Score = 103 bits (260),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 37/229 (16%)

Query  95   EIDVETNQVLFEWRSLDHVDPSVSYTYPSSTDTSGTGFEPRSPWDYFHINSVDKNK-DGD  153
            EID++T +V+  W     +DP       +     G         D+ HINS+  ++ D  
Sbjct  127  EIDLKTGEVVDVWDLFKILDPYRDALLKALDAPFGDIPGVGGGRDWAHINSIQYDEKDDS  186

Query  154  YLISSRHTSCIYKISGKDGSILWRL--HGA----------NPSFKNINFSFS-QQHDARW  200
             ++SSRH S + KI  + G + W L                P     +F ++  QH A  
Sbjct  187  IIVSSRHQSAVVKIDYRTGKVKWILGDPEGWSKELQKKLLTPVDSEGDFDWTWGQHTAVL  246

Query  201  LGENATHTLLSLYNNG-YNGYNQT------HPYSSGMIILIDHVNNTATQIREY-KPLND  252
            +        L +++NG      Q         YS  +   ID  N T  Q+ EY K    
Sbjct  247  IPNG----SLMVFDNGDGRSLEQPAYPSPKDNYSRAVEYKIDENNMTVEQVWEYGKERGA  302

Query  253  DMLSSSQGNMQVLPNR-NVFIGWGN----------NAYISEHDEQGKLV  290
            +  S    +++ L ++ N  +  G              I E D + K V
Sbjct  303  EWYSPITSSVEYLSDKGNYLVYSGGAGLDENGKPIRLEIIEIDYETKEV  351



Lambda      K        H        a         alpha
   0.318    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00007724

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0701    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00007726

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00007725

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00007727

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00007728

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00007729

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00002402

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:190265 pfam02269, TFIID-18kDa, Transcription initiation facto...  106     2e-29


>CDD:190265 pfam02269, TFIID-18kDa, Transcription initiation factor IID, 
18kD subunit.  This family includes the Spt3 yeast transcription 
factors and the 18kD subunit from human transcription initiation 
factor IID (TFIID-18). Determination of the crystal 
structure reveals an atypical histone fold.
Length=93

 Score = 106 bits (266),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 1/92 (1%)

Query  8   KYRQEIQQMMFVSGETAEPSVETTTLIEDIVRQQVIEILARSTMLATRRGVRSISTDDLI  67
            +R+E+Q MM+  G+  +P  ET  L+ED+VR Q+IE+L ++   A  RG R I+ +D+ 
Sbjct  2   LFRKELQSMMYGFGDVQDPLQETVQLLEDLVRGQLIELLQQAMKTAQLRGSRKITLEDIK  61

Query  68  FLIRHDKAKVSRLKTFLSWKDVR-KNVKDSDD  98
           FLIR D  K++RLK  LS  ++  K  K  D+
Sbjct  62  FLIRKDPKKLNRLKDLLSMNELLKKARKQFDE  93



Lambda      K        H        a         alpha
   0.315    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00007730

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00007731

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:190265 pfam02269, TFIID-18kDa, Transcription initiation facto...  106     2e-29


>CDD:190265 pfam02269, TFIID-18kDa, Transcription initiation factor IID, 
18kD subunit.  This family includes the Spt3 yeast transcription 
factors and the 18kD subunit from human transcription initiation 
factor IID (TFIID-18). Determination of the crystal 
structure reveals an atypical histone fold.
Length=93

 Score = 106 bits (266),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 1/92 (1%)

Query  8   KYRQEIQQMMFVSGETAEPSVETTTLIEDIVRQQVIEILARSTMLATRRGVRSISTDDLI  67
            +R+E+Q MM+  G+  +P  ET  L+ED+VR Q+IE+L ++   A  RG R I+ +D+ 
Sbjct  2   LFRKELQSMMYGFGDVQDPLQETVQLLEDLVRGQLIELLQQAMKTAQLRGSRKITLEDIK  61

Query  68  FLIRHDKAKVSRLKTFLSWKDVR-KNVKDSDD  98
           FLIR D  K++RLK  LS  ++  K  K  D+
Sbjct  62  FLIRKDPKKLNRLKDLLSMNELLKKARKQFDE  93



Lambda      K        H        a         alpha
   0.315    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00002403

Length=377
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:190265 pfam02269, TFIID-18kDa, Transcription initiation facto...  107     2e-29


>CDD:190265 pfam02269, TFIID-18kDa, Transcription initiation factor IID, 
18kD subunit.  This family includes the Spt3 yeast transcription 
factors and the 18kD subunit from human transcription initiation 
factor IID (TFIID-18). Determination of the crystal 
structure reveals an atypical histone fold.
Length=93

 Score = 107 bits (270),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 1/92 (1%)

Query  8   KYRQEIQQMMFVSGETAEPSVETTTLIEDIVRQQVIEILARSTMLATRRGVRSISTDDLI  67
            +R+E+Q MM+  G+  +P  ET  L+ED+VR Q+IE+L ++   A  RG R I+ +D+ 
Sbjct  2   LFRKELQSMMYGFGDVQDPLQETVQLLEDLVRGQLIELLQQAMKTAQLRGSRKITLEDIK  61

Query  68  FLIRHDKAKVSRLKTFLSWKDVR-KNVKDSDD  98
           FLIR D  K++RLK  LS  ++  K  K  D+
Sbjct  62  FLIRKDPKKLNRLKDLLSMNELLKKARKQFDE  93



Lambda      K        H        a         alpha
   0.317    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 447362496


Query= TCONS_00002404

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435234 pfam16242, Pyrid_ox_like, Pyridoxamine 5'-phosphate ox...  71.6    2e-17


>CDD:435234 pfam16242, Pyrid_ox_like, Pyridoxamine 5'-phosphate oxidase like. 
 This domain, approximately 140 residues in length, is 
mainly found in general stress proteins in various Xanthomonas 
species. It is composed of a six-stranded antiparallel beta-barrel 
flanked by five alpha-helices and can bind to FMN 
and FAD, suggesting that it may help the bacteria to react against 
the oxidative stress induced by the defense mechanisms 
of the plant.
Length=149

 Score = 71.6 bits (176),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 9/116 (8%)

Query  12   DLIFHTNLFSSKTMDLAVHPSEVNMSFLDPVSGSWASISGTAALVADQETVKRYYSPALQ  71
            DL F T+  S K  ++   P  VN++F DP   ++ S+SGTA +V D+  +   ++P  +
Sbjct  42   DLWFFTDKDSDKVDEIREDPQ-VNVAFSDPSKNNYVSVSGTAEVVRDRAKIDELWNPVAK  100

Query  72   AWLGDLGDGVHDGGPGDPRIGVIKLEAKLATYAITRKGMIGRAVETVKSVSKGDVP  127
            AW  +        G  DP I ++K+  K A Y  +  G +   ++  K+   G  P
Sbjct  101  AWFPE--------GKDDPNITLLKVTPKEAEYWDSPGGKLKFGIKMAKAAVTGKKP  148



Lambda      K        H        a         alpha
   0.315    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00007734

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00002405

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00002410

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00002409

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00002408

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00002411

Length=397


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00002412

Length=397


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00007735

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  212     9e-67


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 212 bits (542),  Expect = 9e-67, Method: Composition-based stats.
 Identities = 99/332 (30%), Positives = 146/332 (44%), Gaps = 28/332 (8%)

Query  13   DRRHQIELKKLFCKFRNTHVHTQKDLGPE-NMFVGVGSDEAIDALLRCFCVPGKDKILTC  71
                  EL++   KF          L  E  +  G G+   I+AL+     PG D IL  
Sbjct  37   PTDGHPELREALAKFLGRS--PVLKLDREAAVVFGSGAGANIEALIFLLANPG-DAILVP  93

Query  72   PPTYGMYAVSAEVNDVEIVKVPLDVNNGFQLQPDKINEALSADPTIKMAYICSPGNPTAN  131
             PTY  Y   A +   E+V+ PL  +N F L  D +  AL   P  K+    SP NPT  
Sbjct  94   APTYASYIRIARLAGGEVVRYPLYDSNDFHLDFDALEAALKEKP--KVVLHTSPHNPTGT  151

Query  132  LIRKEDIQKVLEHPTWNGV-VIVDEAYIDFAPEGS---SLAEWVTEWPNLVVMQTLSKAF  187
            +   E+++K+L+    + + ++VDEAY  F        +    + E PNL+V+ + SKAF
Sbjct  152  VATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLAEGPNLLVVGSFSKAF  211

Query  188  GLAGIRLGVAFTSPEIARLLNSLKAPYNISSPTSAIATAALSPENMAV--MRNYREQIIA  245
            GLAG R+G    +  +   L  L  P+  S+   A A AALS   +    +   R++I  
Sbjct  212  GLAGWRVGYILGNAAVISQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQRIKE  271

Query  246  QRKRMLQELPKIPGVGRFLGGQESNFLLVEMLDKPASEGGKPSNAVALAAYEAMAEKRGV  305
            +R  +   L    G+       ++ F L+  LD             A    + + E+ GV
Sbjct  272  RRDYLRDGLQAA-GLSVL--PSQAGFFLLTGLD----------PETAKELAQVLLEEVGV  318

Query  306  VVRFRGKELGCEGCLRITV--GTEQEVTRFLR  335
             V   G   G  G LRITV  GTE+E+   L 
Sbjct  319  YVT-PGSSPGVPGWLRITVAGGTEEELEELLE  349



Lambda      K        H        a         alpha
   0.319    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00002414

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  212     9e-67


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 212 bits (542),  Expect = 9e-67, Method: Composition-based stats.
 Identities = 99/332 (30%), Positives = 146/332 (44%), Gaps = 28/332 (8%)

Query  13   DRRHQIELKKLFCKFRNTHVHTQKDLGPE-NMFVGVGSDEAIDALLRCFCVPGKDKILTC  71
                  EL++   KF          L  E  +  G G+   I+AL+     PG D IL  
Sbjct  37   PTDGHPELREALAKFLGRS--PVLKLDREAAVVFGSGAGANIEALIFLLANPG-DAILVP  93

Query  72   PPTYGMYAVSAEVNDVEIVKVPLDVNNGFQLQPDKINEALSADPTIKMAYICSPGNPTAN  131
             PTY  Y   A +   E+V+ PL  +N F L  D +  AL   P  K+    SP NPT  
Sbjct  94   APTYASYIRIARLAGGEVVRYPLYDSNDFHLDFDALEAALKEKP--KVVLHTSPHNPTGT  151

Query  132  LIRKEDIQKVLEHPTWNGV-VIVDEAYIDFAPEGS---SLAEWVTEWPNLVVMQTLSKAF  187
            +   E+++K+L+    + + ++VDEAY  F        +    + E PNL+V+ + SKAF
Sbjct  152  VATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLAEGPNLLVVGSFSKAF  211

Query  188  GLAGIRLGVAFTSPEIARLLNSLKAPYNISSPTSAIATAALSPENMAV--MRNYREQIIA  245
            GLAG R+G    +  +   L  L  P+  S+   A A AALS   +    +   R++I  
Sbjct  212  GLAGWRVGYILGNAAVISQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQRIKE  271

Query  246  QRKRMLQELPKIPGVGRFLGGQESNFLLVEMLDKPASEGGKPSNAVALAAYEAMAEKRGV  305
            +R  +   L    G+       ++ F L+  LD             A    + + E+ GV
Sbjct  272  RRDYLRDGLQAA-GLSVL--PSQAGFFLLTGLD----------PETAKELAQVLLEEVGV  318

Query  306  VVRFRGKELGCEGCLRITV--GTEQEVTRFLR  335
             V   G   G  G LRITV  GTE+E+   L 
Sbjct  319  YVT-PGSSPGVPGWLRITVAGGTEEELEELLE  349



Lambda      K        H        a         alpha
   0.319    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00002413

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  212     9e-67


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 212 bits (542),  Expect = 9e-67, Method: Composition-based stats.
 Identities = 99/332 (30%), Positives = 146/332 (44%), Gaps = 28/332 (8%)

Query  13   DRRHQIELKKLFCKFRNTHVHTQKDLGPE-NMFVGVGSDEAIDALLRCFCVPGKDKILTC  71
                  EL++   KF          L  E  +  G G+   I+AL+     PG D IL  
Sbjct  37   PTDGHPELREALAKFLGRS--PVLKLDREAAVVFGSGAGANIEALIFLLANPG-DAILVP  93

Query  72   PPTYGMYAVSAEVNDVEIVKVPLDVNNGFQLQPDKINEALSADPTIKMAYICSPGNPTAN  131
             PTY  Y   A +   E+V+ PL  +N F L  D +  AL   P  K+    SP NPT  
Sbjct  94   APTYASYIRIARLAGGEVVRYPLYDSNDFHLDFDALEAALKEKP--KVVLHTSPHNPTGT  151

Query  132  LIRKEDIQKVLEHPTWNGV-VIVDEAYIDFAPEGS---SLAEWVTEWPNLVVMQTLSKAF  187
            +   E+++K+L+    + + ++VDEAY  F        +    + E PNL+V+ + SKAF
Sbjct  152  VATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLAEGPNLLVVGSFSKAF  211

Query  188  GLAGIRLGVAFTSPEIARLLNSLKAPYNISSPTSAIATAALSPENMAV--MRNYREQIIA  245
            GLAG R+G    +  +   L  L  P+  S+   A A AALS   +    +   R++I  
Sbjct  212  GLAGWRVGYILGNAAVISQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQRIKE  271

Query  246  QRKRMLQELPKIPGVGRFLGGQESNFLLVEMLDKPASEGGKPSNAVALAAYEAMAEKRGV  305
            +R  +   L    G+       ++ F L+  LD             A    + + E+ GV
Sbjct  272  RRDYLRDGLQAA-GLSVL--PSQAGFFLLTGLD----------PETAKELAQVLLEEVGV  318

Query  306  VVRFRGKELGCEGCLRITV--GTEQEVTRFLR  335
             V   G   G  G LRITV  GTE+E+   L 
Sbjct  319  YVT-PGSSPGVPGWLRITVAGGTEEELEELLE  349



Lambda      K        H        a         alpha
   0.319    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00007736

Length=510


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.123    0.322    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 634393654


Query= TCONS_00002416

Length=327


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00002417

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00002418

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00007737

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.135    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00002419

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00002420

Length=335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly ro...  133     1e-39


>CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly roll domain. 
 This domain is found in beta galactosidase enzymes. It 
has a jelly roll fold.
Length=111

 Score = 133 bits (338),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 54/114 (47%), Positives = 69/114 (61%), Gaps = 6/114 (5%)

Query  188  YAERQGFHQPQPPS---QKWKSASPLDGLSKPGIGFYTAQFDLDIPSGWDVPLYFNFGNS  244
            Y ERQG+H P   +     W      D     G+ FY   F LDIP G+DV L   F   
Sbjct  1    YDERQGWHLPGFTTTNNSTWPVLYSSDYGFHAGVRFYRGTF-LDIPDGYDVSLSLTFQGG  59

Query  245  TKSAYRVQLYVNGYQYGKFVSNIGPQTSFPVPQGILNYQGTNWVALTLWALESD  298
            T  A+RVQL++NGYQ G +V +IGPQT+FPVP GILNY+G N +A+ +WA+  D
Sbjct  60   T--AFRVQLWLNGYQLGSYVPHIGPQTTFPVPPGILNYRGDNTLAVLVWAMGHD  111


 Score = 103 bits (258),  Expect = 8e-28, Method: Composition-based stats.
 Identities = 41/122 (34%), Positives = 54/122 (44%), Gaps = 19/122 (16%)

Query  19   YDDS-AWPAADLDTTPNTLRPLTTPKSLYSSDYGFHTGYLIYRGHF--VADGSETTFDVR  75
            YD+   W      TT N+  P      LYSSDYGFH G   YRG F  + DG + +  + 
Sbjct  1    YDERQGWHLPGFTTTNNSTWP-----VLYSSDYGFHAGVRFYRGTFLDIPDGYDVSLSLT  55

Query  76   TQGGSAFGSSVWLNESFLGSWTGLNANADYNSTYKLPQVEQG-----KNYVLTILIDTMG  130
             QGG+AF   +WLN   LGS+               P V  G      +  L +L+  MG
Sbjct  56   FQGGTAFRVQLWLNGYQLGSYVP-----HIGPQTTFP-VPPGILNYRGDNTLAVLVWAMG  109

Query  131  LN  132
             +
Sbjct  110  HD  111



Lambda      K        H        a         alpha
   0.315    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00002422

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly ro...  136     2e-42


>CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly roll domain. 
 This domain is found in beta galactosidase enzymes. It 
has a jelly roll fold.
Length=111

 Score = 136 bits (345),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 54/114 (47%), Positives = 69/114 (61%), Gaps = 6/114 (5%)

Query  60   YAERQGFHQPQPPS---QKWKSASPLDGLSKPGIGFYTAQFDLDIPSGWDVPLYFNFGNS  116
            Y ERQG+H P   +     W      D     G+ FY   F LDIP G+DV L   F   
Sbjct  1    YDERQGWHLPGFTTTNNSTWPVLYSSDYGFHAGVRFYRGTF-LDIPDGYDVSLSLTFQGG  59

Query  117  TKSAYRVQLYVNGYQYGKFVSNIGPQTSFPVPQGILNYQGTNWVALTLWALESD  170
            T  A+RVQL++NGYQ G +V +IGPQT+FPVP GILNY+G N +A+ +WA+  D
Sbjct  60   T--AFRVQLWLNGYQLGSYVPHIGPQTTFPVPPGILNYRGDNTLAVLVWAMGHD  111



Lambda      K        H        a         alpha
   0.315    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00002421

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly ro...  136     2e-42


>CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly roll domain. 
 This domain is found in beta galactosidase enzymes. It 
has a jelly roll fold.
Length=111

 Score = 136 bits (345),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 54/114 (47%), Positives = 69/114 (61%), Gaps = 6/114 (5%)

Query  60   YAERQGFHQPQPPS---QKWKSASPLDGLSKPGIGFYTAQFDLDIPSGWDVPLYFNFGNS  116
            Y ERQG+H P   +     W      D     G+ FY   F LDIP G+DV L   F   
Sbjct  1    YDERQGWHLPGFTTTNNSTWPVLYSSDYGFHAGVRFYRGTF-LDIPDGYDVSLSLTFQGG  59

Query  117  TKSAYRVQLYVNGYQYGKFVSNIGPQTSFPVPQGILNYQGTNWVALTLWALESD  170
            T  A+RVQL++NGYQ G +V +IGPQT+FPVP GILNY+G N +A+ +WA+  D
Sbjct  60   T--AFRVQLWLNGYQLGSYVPHIGPQTTFPVPPGILNYRGDNTLAVLVWAMGHD  111



Lambda      K        H        a         alpha
   0.315    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00007739

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.135    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00002425

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00002424

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.135    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00007741

Length=335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly ro...  133     1e-39


>CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly roll domain. 
 This domain is found in beta galactosidase enzymes. It 
has a jelly roll fold.
Length=111

 Score = 133 bits (338),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 54/114 (47%), Positives = 69/114 (61%), Gaps = 6/114 (5%)

Query  188  YAERQGFHQPQPPS---QKWKSASPLDGLSKPGIGFYTAQFDLDIPSGWDVPLYFNFGNS  244
            Y ERQG+H P   +     W      D     G+ FY   F LDIP G+DV L   F   
Sbjct  1    YDERQGWHLPGFTTTNNSTWPVLYSSDYGFHAGVRFYRGTF-LDIPDGYDVSLSLTFQGG  59

Query  245  TKSAYRVQLYVNGYQYGKFVSNIGPQTSFPVPQGILNYQGTNWVALTLWALESD  298
            T  A+RVQL++NGYQ G +V +IGPQT+FPVP GILNY+G N +A+ +WA+  D
Sbjct  60   T--AFRVQLWLNGYQLGSYVPHIGPQTTFPVPPGILNYRGDNTLAVLVWAMGHD  111


 Score = 103 bits (258),  Expect = 8e-28, Method: Composition-based stats.
 Identities = 41/122 (34%), Positives = 54/122 (44%), Gaps = 19/122 (16%)

Query  19   YDDS-AWPAADLDTTPNTLRPLTTPKSLYSSDYGFHTGYLIYRGHF--VADGSETTFDVR  75
            YD+   W      TT N+  P      LYSSDYGFH G   YRG F  + DG + +  + 
Sbjct  1    YDERQGWHLPGFTTTNNSTWP-----VLYSSDYGFHAGVRFYRGTFLDIPDGYDVSLSLT  55

Query  76   TQGGSAFGSSVWLNESFLGSWTGLNANADYNSTYKLPQVEQG-----KNYVLTILIDTMG  130
             QGG+AF   +WLN   LGS+               P V  G      +  L +L+  MG
Sbjct  56   FQGGTAFRVQLWLNGYQLGSYVP-----HIGPQTTFP-VPPGILNYRGDNTLAVLVWAMG  109

Query  131  LN  132
             +
Sbjct  110  HD  111



Lambda      K        H        a         alpha
   0.315    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00007740

Length=335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly ro...  133     1e-39


>CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly roll domain. 
 This domain is found in beta galactosidase enzymes. It 
has a jelly roll fold.
Length=111

 Score = 133 bits (338),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 54/114 (47%), Positives = 69/114 (61%), Gaps = 6/114 (5%)

Query  188  YAERQGFHQPQPPS---QKWKSASPLDGLSKPGIGFYTAQFDLDIPSGWDVPLYFNFGNS  244
            Y ERQG+H P   +     W      D     G+ FY   F LDIP G+DV L   F   
Sbjct  1    YDERQGWHLPGFTTTNNSTWPVLYSSDYGFHAGVRFYRGTF-LDIPDGYDVSLSLTFQGG  59

Query  245  TKSAYRVQLYVNGYQYGKFVSNIGPQTSFPVPQGILNYQGTNWVALTLWALESD  298
            T  A+RVQL++NGYQ G +V +IGPQT+FPVP GILNY+G N +A+ +WA+  D
Sbjct  60   T--AFRVQLWLNGYQLGSYVPHIGPQTTFPVPPGILNYRGDNTLAVLVWAMGHD  111


 Score = 103 bits (258),  Expect = 8e-28, Method: Composition-based stats.
 Identities = 41/122 (34%), Positives = 54/122 (44%), Gaps = 19/122 (16%)

Query  19   YDDS-AWPAADLDTTPNTLRPLTTPKSLYSSDYGFHTGYLIYRGHF--VADGSETTFDVR  75
            YD+   W      TT N+  P      LYSSDYGFH G   YRG F  + DG + +  + 
Sbjct  1    YDERQGWHLPGFTTTNNSTWP-----VLYSSDYGFHAGVRFYRGTFLDIPDGYDVSLSLT  55

Query  76   TQGGSAFGSSVWLNESFLGSWTGLNANADYNSTYKLPQVEQG-----KNYVLTILIDTMG  130
             QGG+AF   +WLN   LGS+               P V  G      +  L +L+  MG
Sbjct  56   FQGGTAFRVQLWLNGYQLGSYVP-----HIGPQTTFP-VPPGILNYRGDNTLAVLVWAMG  109

Query  131  LN  132
             +
Sbjct  110  HD  111



Lambda      K        H        a         alpha
   0.315    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00007742

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00007743

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00002423

Length=335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly ro...  133     1e-39


>CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly roll domain. 
 This domain is found in beta galactosidase enzymes. It 
has a jelly roll fold.
Length=111

 Score = 133 bits (338),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 54/114 (47%), Positives = 69/114 (61%), Gaps = 6/114 (5%)

Query  188  YAERQGFHQPQPPS---QKWKSASPLDGLSKPGIGFYTAQFDLDIPSGWDVPLYFNFGNS  244
            Y ERQG+H P   +     W      D     G+ FY   F LDIP G+DV L   F   
Sbjct  1    YDERQGWHLPGFTTTNNSTWPVLYSSDYGFHAGVRFYRGTF-LDIPDGYDVSLSLTFQGG  59

Query  245  TKSAYRVQLYVNGYQYGKFVSNIGPQTSFPVPQGILNYQGTNWVALTLWALESD  298
            T  A+RVQL++NGYQ G +V +IGPQT+FPVP GILNY+G N +A+ +WA+  D
Sbjct  60   T--AFRVQLWLNGYQLGSYVPHIGPQTTFPVPPGILNYRGDNTLAVLVWAMGHD  111


 Score = 103 bits (258),  Expect = 8e-28, Method: Composition-based stats.
 Identities = 41/122 (34%), Positives = 54/122 (44%), Gaps = 19/122 (16%)

Query  19   YDDS-AWPAADLDTTPNTLRPLTTPKSLYSSDYGFHTGYLIYRGHF--VADGSETTFDVR  75
            YD+   W      TT N+  P      LYSSDYGFH G   YRG F  + DG + +  + 
Sbjct  1    YDERQGWHLPGFTTTNNSTWP-----VLYSSDYGFHAGVRFYRGTFLDIPDGYDVSLSLT  55

Query  76   TQGGSAFGSSVWLNESFLGSWTGLNANADYNSTYKLPQVEQG-----KNYVLTILIDTMG  130
             QGG+AF   +WLN   LGS+               P V  G      +  L +L+  MG
Sbjct  56   FQGGTAFRVQLWLNGYQLGSYVP-----HIGPQTTFP-VPPGILNYRGDNTLAVLVWAMG  109

Query  131  LN  132
             +
Sbjct  110  HD  111



Lambda      K        H        a         alpha
   0.315    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00007744

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00002426

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00007745

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00002427

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive dom...  89.0    6e-24


>CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.  Peptidase 
M16 consists of two structurally related domains. One 
is the active peptidase, whereas the other is inactive. The 
two domains hold the substrate like a clamp.
Length=181

 Score = 89.0 bits (221),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 15/131 (11%)

Query  1    MVLVGAGGIPHEQLVKLAEQHFGSLPSKPPTSAALALTAEQKRTPEFIGSEIRIRDDTLP  60
            MVLV  G + HE+L+ LAE++FG LP+ P                +  G E+ +     P
Sbjct  20   MVLVIVGDVDHEELLDLAEKYFGDLPASPKGK----PRPPPLEPAKLKGREVVVPKKDEP  75

Query  61   SAHIAVAVEGVSWKDD-DYFTALVAQAIVGNWDRAMGNSPYLGSRLSSFV-NHHNLANSF  118
             AH+A+A  G    +D D     V   ++G           + SRL   +     LA S 
Sbjct  76   QAHLALAFPGPPLNNDEDSLALDVLNELLGGG---------MSSRLFQELREKEGLAYSV  126

Query  119  MSFSTSYSDTG  129
             SF+ SYSD+G
Sbjct  127  SSFNDSYSDSG  137



Lambda      K        H        a         alpha
   0.316    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00002428

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive dom...  89.0    6e-24


>CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.  Peptidase 
M16 consists of two structurally related domains. One 
is the active peptidase, whereas the other is inactive. The 
two domains hold the substrate like a clamp.
Length=181

 Score = 89.0 bits (221),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 15/131 (11%)

Query  1    MVLVGAGGIPHEQLVKLAEQHFGSLPSKPPTSAALALTAEQKRTPEFIGSEIRIRDDTLP  60
            MVLV  G + HE+L+ LAE++FG LP+ P                +  G E+ +     P
Sbjct  20   MVLVIVGDVDHEELLDLAEKYFGDLPASPKGK----PRPPPLEPAKLKGREVVVPKKDEP  75

Query  61   SAHIAVAVEGVSWKDD-DYFTALVAQAIVGNWDRAMGNSPYLGSRLSSFV-NHHNLANSF  118
             AH+A+A  G    +D D     V   ++G           + SRL   +     LA S 
Sbjct  76   QAHLALAFPGPPLNNDEDSLALDVLNELLGGG---------MSSRLFQELREKEGLAYSV  126

Query  119  MSFSTSYSDTG  129
             SF+ SYSD+G
Sbjct  127  SSFNDSYSDSG  137



Lambda      K        H        a         alpha
   0.316    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00002429

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive dom...  89.0    6e-24


>CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.  Peptidase 
M16 consists of two structurally related domains. One 
is the active peptidase, whereas the other is inactive. The 
two domains hold the substrate like a clamp.
Length=181

 Score = 89.0 bits (221),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 15/131 (11%)

Query  1    MVLVGAGGIPHEQLVKLAEQHFGSLPSKPPTSAALALTAEQKRTPEFIGSEIRIRDDTLP  60
            MVLV  G + HE+L+ LAE++FG LP+ P                +  G E+ +     P
Sbjct  20   MVLVIVGDVDHEELLDLAEKYFGDLPASPKGK----PRPPPLEPAKLKGREVVVPKKDEP  75

Query  61   SAHIAVAVEGVSWKDD-DYFTALVAQAIVGNWDRAMGNSPYLGSRLSSFV-NHHNLANSF  118
             AH+A+A  G    +D D     V   ++G           + SRL   +     LA S 
Sbjct  76   QAHLALAFPGPPLNNDEDSLALDVLNELLGGG---------MSSRLFQELREKEGLAYSV  126

Query  119  MSFSTSYSDTG  129
             SF+ SYSD+G
Sbjct  127  SSFNDSYSDSG  137



Lambda      K        H        a         alpha
   0.316    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00007746

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive dom...  89.0    6e-24


>CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.  Peptidase 
M16 consists of two structurally related domains. One 
is the active peptidase, whereas the other is inactive. The 
two domains hold the substrate like a clamp.
Length=181

 Score = 89.0 bits (221),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 15/131 (11%)

Query  1    MVLVGAGGIPHEQLVKLAEQHFGSLPSKPPTSAALALTAEQKRTPEFIGSEIRIRDDTLP  60
            MVLV  G + HE+L+ LAE++FG LP+ P                +  G E+ +     P
Sbjct  20   MVLVIVGDVDHEELLDLAEKYFGDLPASPKGK----PRPPPLEPAKLKGREVVVPKKDEP  75

Query  61   SAHIAVAVEGVSWKDD-DYFTALVAQAIVGNWDRAMGNSPYLGSRLSSFV-NHHNLANSF  118
             AH+A+A  G    +D D     V   ++G           + SRL   +     LA S 
Sbjct  76   QAHLALAFPGPPLNNDEDSLALDVLNELLGGG---------MSSRLFQELREKEGLAYSV  126

Query  119  MSFSTSYSDTG  129
             SF+ SYSD+G
Sbjct  127  SSFNDSYSDSG  137



Lambda      K        H        a         alpha
   0.316    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00002430

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396019 pfam01269, Fibrillarin, Fibrillarin                        307     8e-109


>CDD:396019 pfam01269, Fibrillarin, Fibrillarin.  
Length=227

 Score = 307 bits (789),  Expect = 8e-109, Method: Composition-based stats.
 Identities = 107/159 (67%), Positives = 129/159 (81%), Gaps = 0/159 (0%)

Query  1    MKPGSKVLYLGSASGTSVSHVADIVGPTGNVYAVEFSHRSGRDLIGMATHRTNVIPIVED  60
            +KPGSKVLYLG+ASGT+VSHV+DIVGP G VYAVEFS R GR+LI +A  R N++PI+ED
Sbjct  69   IKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKKRPNIVPILED  128

Query  61   ARHPLRYRMLVPMVDVIFADVAQPDQARIVGLNAHMFLKNEGGVIVSVKANCIDSTAKPE  120
            ARHP +YRMLV MVDVIFADVAQPDQARI+ LNA  FLK  G  ++S+KA  ID T +PE
Sbjct  129  ARHPQKYRMLVEMVDVIFADVAQPDQARILALNARYFLKEGGYFMISIKARSIDVTKEPE  188

Query  121  VVFAREVQKMREEKIKPKEQLTLEPFERDHCIVSGIYKR  159
             VF REV+K++EE  KP EQ+ LEP+E+DH +V G YKR
Sbjct  189  EVFKREVRKLKEEGFKPIEQVHLEPYEKDHAMVVGKYKR  227



Lambda      K        H        a         alpha
   0.320    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00002431

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  90.4    6e-22
CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogen...  67.0    3e-13


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 90.4 bits (225),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 85/202 (42%), Gaps = 16/202 (8%)

Query  3    IIITGAGGYVGQELAAALLSNEPNTTVLLTDVVAPSVPSSAAEHASRVKSVQADLTDRSV  62
            I++TGA G++G  L   LL       V+  D +  +  ++       V   + DLTDR  
Sbjct  1    ILVTGATGFIGSHLVRRLLEK--GYEVIGLDRLTSASNTARLADLRFV---EGDLTDRDA  55

Query  63   VDSLFNESHRYDTVYLLHGIMSSGAEANFELG---MRVNLDATRYILDRLRTIMAGV-KV  118
            ++ L     R D V  L  +   G  A+ E     +  N+  T  +L+  R   AGV + 
Sbjct  56   LEKLL-ADVRPDAVIHLAAV--GGVGASIEDPEDFIEANVLGTLNLLEAARK--AGVKRF  110

Query  119  VFTSTLAVYGLAPPGFVIDETNFPPV-PSSSYGSAKLVIETLLNDYSRRGFIDGRAVRLP  177
            +F S+  VYG        + T   P+ P+S Y +AKL  E L+  Y+    +    +RL 
Sbjct  111  LFASSSEVYGDGAEIPQEETTLTGPLAPNSPYAAAKLAGEWLVLAYAAAYGLRAVILRLF  170

Query  178  TVTVRAGQPTQAASSFASDIIR  199
             V    G      S     +IR
Sbjct  171  NV-YGPGDNEGFVSRVIPALIR  191


>CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase 
family.  The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene 
isomerase (3 beta-HSD) catalyzes the oxidation 
and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene 
steroid precursors into the corresponding 
4-ene-ketosteroids necessary for the formation of all classes 
of steroid hormones.
Length=279

 Score = 67.0 bits (164),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 82/184 (45%), Gaps = 12/184 (7%)

Query  4    IITGAGGYVGQELAAALLSNEPNTTVLLTDVVAPSVPSSAAEHASRVKSVQADLTDRSVV  63
            ++TG GG++G+ +   L+       V + D+            ++ +K +Q D+TD+  +
Sbjct  1    VVTGGGGFLGRHIIKLLVREGELKEVRVFDLRESPELLEDFSKSNVIKYIQGDVTDKDDL  60

Query  64   DSLFNESHRYDTVYLLHGIMSSGAEANFELGMRVNLDATRYILDRLRTIMAGVKV-VFTS  122
            D+        D V      +    +  F+  M+VN+  T+ +L+      AGV+V V+TS
Sbjct  61   DNALEGV---DVVIHTASAVDVFGKYTFDEIMKVNVKGTQNVLEACVK--AGVRVLVYTS  115

Query  123  TLAVYGLAPPGFVI----DETNFPPVPSSSYGSAKLVIETLLNDYSRRGFIDGRAVRLPT  178
            +  V G    G  I    +ET +      +Y  +K + E L+   + R   +G   RL T
Sbjct  116  SAEVVGPNSYGQPILNGDEETPYESTHQDAYPRSKAIAEKLVLKANGRPLKNGG--RLYT  173

Query  179  VTVR  182
              +R
Sbjct  174  CALR  177



Lambda      K        H        a         alpha
   0.317    0.133    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 372672612


Query= TCONS_00007747

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396019 pfam01269, Fibrillarin, Fibrillarin                        307     8e-109


>CDD:396019 pfam01269, Fibrillarin, Fibrillarin.  
Length=227

 Score = 307 bits (789),  Expect = 8e-109, Method: Composition-based stats.
 Identities = 107/159 (67%), Positives = 129/159 (81%), Gaps = 0/159 (0%)

Query  1    MKPGSKVLYLGSASGTSVSHVADIVGPTGNVYAVEFSHRSGRDLIGMATHRTNVIPIVED  60
            +KPGSKVLYLG+ASGT+VSHV+DIVGP G VYAVEFS R GR+LI +A  R N++PI+ED
Sbjct  69   IKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKKRPNIVPILED  128

Query  61   ARHPLRYRMLVPMVDVIFADVAQPDQARIVGLNAHMFLKNEGGVIVSVKANCIDSTAKPE  120
            ARHP +YRMLV MVDVIFADVAQPDQARI+ LNA  FLK  G  ++S+KA  ID T +PE
Sbjct  129  ARHPQKYRMLVEMVDVIFADVAQPDQARILALNARYFLKEGGYFMISIKARSIDVTKEPE  188

Query  121  VVFAREVQKMREEKIKPKEQLTLEPFERDHCIVSGIYKR  159
             VF REV+K++EE  KP EQ+ LEP+E+DH +V G YKR
Sbjct  189  EVFKREVRKLKEEGFKPIEQVHLEPYEKDHAMVVGKYKR  227



Lambda      K        H        a         alpha
   0.320    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0754    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00007748

Length=503
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462301 pfam07885, Ion_trans_2, Ion channel. This family inclu...  62.3    6e-13


>CDD:462301 pfam07885, Ion_trans_2, Ion channel.  This family includes the 
two membrane helix type ion channels found in bacteria.
Length=78

 Score = 62.3 bits (152),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 25/70 (36%), Positives = 38/70 (54%), Gaps = 2/70 (3%)

Query  29  FVIWLLIGAVIFS--RVIDISFADALYFSDVTILTVGFGDIAPTNAIGRGILFPYAVMGI  86
            ++ L+ G V +      + SF DALYFS VT+ TVG+GDI P    GR     Y ++GI
Sbjct  3   LLLVLIFGTVYYLLEEGWEWSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILIGI  62

Query  87  IMLGLVVGSI  96
            +  + +  +
Sbjct  63  PLFAIFLAVL  72


 Score = 60.4 bits (147),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 42/77 (55%), Gaps = 2/77 (3%)

Query  213  IFGIVWTCGAVVFWQLEE--DLSYFNALYFGFCSLITVGYGDFTPTTNAAKPFFVVWSLI  270
            I  ++      V++ LEE  + S+ +ALYF F +L TVGYGD  P T+A + F + + LI
Sbjct  1    IVLLLVLIFGTVYYLLEEGWEWSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILI  60

Query  271  AVPTMTTLISEMSDTVV  287
             +P     ++ +   + 
Sbjct  61   GIPLFAIFLAVLGRFLT  77



Lambda      K        H        a         alpha
   0.322    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 623795192


Query= TCONS_00007749

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00002433

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00007750

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00007751

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00002434

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00002436

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00002435

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00007753

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00002437

Length=1229


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1580541416


Query= TCONS_00007754

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00002438

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00002439

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00002440

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00007755

Length=455


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00007756

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426258 pfam01423, LSM, LSM domain. The LSM domain contains Sm...  72.5    9e-19


>CDD:426258 pfam01423, LSM, LSM domain.  The LSM domain contains Sm proteins 
as well as other related LSM (Like Sm) proteins. The U1, 
U2, U4/U6, and U5 small nuclear ribonucleoprotein particles 
(snRNPs) involved in pre-mRNA splicing contain seven Sm proteins 
(B/B', D1, D2, D3, E, F and G) in common, which assemble 
around the Sm site present in four of the major spliceosomal 
small nuclear RNAs. The U6 snRNP binds to the LSM (Like 
Sm) proteins. Sm proteins are also found in archaebacteria, 
which do not have any splicing apparatus suggesting a more general 
role for Sm proteins. All Sm proteins contain a common 
sequence motif in two segments, Sm1 and Sm2, separated by 
a short variable linker. This family also includes the bacterial 
Hfq (host factor Q) proteins. Hfq are also RNA-binding 
proteins, that form hexameric rings.
Length=66

 Score = 72.5 bits (179),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 37/70 (53%), Positives = 47/70 (67%), Gaps = 4/70 (6%)

Query  53   LDLSKYMDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMRDDEGNETTRSLGLIVA  112
              L K + K V V+   GRE+ G LKG+DQ MNLVLDDV+E+++D E     R LGL++ 
Sbjct  1    KFLKKLLGKRVLVELKNGRELRGTLKGFDQFMNLVLDDVEETIKDGE----VRKLGLVLI  56

Query  113  RGTLIVLISP  122
            RG  IVLISP
Sbjct  57   RGNNIVLISP  66



Lambda      K        H        a         alpha
   0.311    0.135    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00007757

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00007758

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426258 pfam01423, LSM, LSM domain. The LSM domain contains Sm...  74.1    3e-19


>CDD:426258 pfam01423, LSM, LSM domain.  The LSM domain contains Sm proteins 
as well as other related LSM (Like Sm) proteins. The U1, 
U2, U4/U6, and U5 small nuclear ribonucleoprotein particles 
(snRNPs) involved in pre-mRNA splicing contain seven Sm proteins 
(B/B', D1, D2, D3, E, F and G) in common, which assemble 
around the Sm site present in four of the major spliceosomal 
small nuclear RNAs. The U6 snRNP binds to the LSM (Like 
Sm) proteins. Sm proteins are also found in archaebacteria, 
which do not have any splicing apparatus suggesting a more general 
role for Sm proteins. All Sm proteins contain a common 
sequence motif in two segments, Sm1 and Sm2, separated by 
a short variable linker. This family also includes the bacterial 
Hfq (host factor Q) proteins. Hfq are also RNA-binding 
proteins, that form hexameric rings.
Length=66

 Score = 74.1 bits (183),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 37/70 (53%), Positives = 47/70 (67%), Gaps = 4/70 (6%)

Query  53   LDLSKYMDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMRDDEGNETTRSLGLIVA  112
              L K + K V V+   GRE+ G LKG+DQ MNLVLDDV+E+++D E     R LGL++ 
Sbjct  1    KFLKKLLGKRVLVELKNGRELRGTLKGFDQFMNLVLDDVEETIKDGE----VRKLGLVLI  56

Query  113  RGTLIVLISP  122
            RG  IVLISP
Sbjct  57   RGNNIVLISP  66



Lambda      K        H        a         alpha
   0.311    0.135    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00007759

Length=132
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426258 pfam01423, LSM, LSM domain. The LSM domain contains Sm...  74.1    3e-19


>CDD:426258 pfam01423, LSM, LSM domain.  The LSM domain contains Sm proteins 
as well as other related LSM (Like Sm) proteins. The U1, 
U2, U4/U6, and U5 small nuclear ribonucleoprotein particles 
(snRNPs) involved in pre-mRNA splicing contain seven Sm proteins 
(B/B', D1, D2, D3, E, F and G) in common, which assemble 
around the Sm site present in four of the major spliceosomal 
small nuclear RNAs. The U6 snRNP binds to the LSM (Like 
Sm) proteins. Sm proteins are also found in archaebacteria, 
which do not have any splicing apparatus suggesting a more general 
role for Sm proteins. All Sm proteins contain a common 
sequence motif in two segments, Sm1 and Sm2, separated by 
a short variable linker. This family also includes the bacterial 
Hfq (host factor Q) proteins. Hfq are also RNA-binding 
proteins, that form hexameric rings.
Length=66

 Score = 74.1 bits (183),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 37/70 (53%), Positives = 47/70 (67%), Gaps = 4/70 (6%)

Query  53   LDLSKYMDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMRDDEGNETTRSLGLIVA  112
              L K + K V V+   GRE+ G LKG+DQ MNLVLDDV+E+++D E     R LGL++ 
Sbjct  1    KFLKKLLGKRVLVELKNGRELRGTLKGFDQFMNLVLDDVEETIKDGE----VRKLGLVLI  56

Query  113  RGTLIVLISP  122
            RG  IVLISP
Sbjct  57   RGNNIVLISP  66



Lambda      K        H        a         alpha
   0.310    0.135    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00007760

Length=134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426258 pfam01423, LSM, LSM domain. The LSM domain contains Sm...  62.1    1e-14


>CDD:426258 pfam01423, LSM, LSM domain.  The LSM domain contains Sm proteins 
as well as other related LSM (Like Sm) proteins. The U1, 
U2, U4/U6, and U5 small nuclear ribonucleoprotein particles 
(snRNPs) involved in pre-mRNA splicing contain seven Sm proteins 
(B/B', D1, D2, D3, E, F and G) in common, which assemble 
around the Sm site present in four of the major spliceosomal 
small nuclear RNAs. The U6 snRNP binds to the LSM (Like 
Sm) proteins. Sm proteins are also found in archaebacteria, 
which do not have any splicing apparatus suggesting a more general 
role for Sm proteins. All Sm proteins contain a common 
sequence motif in two segments, Sm1 and Sm2, separated by 
a short variable linker. This family also includes the bacterial 
Hfq (host factor Q) proteins. Hfq are also RNA-binding 
proteins, that form hexameric rings.
Length=66

 Score = 62.1 bits (152),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 26/57 (46%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query  53   LDLSKYMDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMRGKSLNDITKLDEV  109
              L K + K V V+   GRE+ G LKG+DQ MNLVLDDV+E+++      + KL  V
Sbjct  1    KFLKKLLGKRVLVELKNGRELRGTLKGFDQFMNLVLDDVEETIKDGE---VRKLGLV  54



Lambda      K        H        a         alpha
   0.310    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00002442

Length=71
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426258 pfam01423, LSM, LSM domain. The LSM domain contains Sm...  50.2    8e-11


>CDD:426258 pfam01423, LSM, LSM domain.  The LSM domain contains Sm proteins 
as well as other related LSM (Like Sm) proteins. The U1, 
U2, U4/U6, and U5 small nuclear ribonucleoprotein particles 
(snRNPs) involved in pre-mRNA splicing contain seven Sm proteins 
(B/B', D1, D2, D3, E, F and G) in common, which assemble 
around the Sm site present in four of the major spliceosomal 
small nuclear RNAs. The U6 snRNP binds to the LSM (Like 
Sm) proteins. Sm proteins are also found in archaebacteria, 
which do not have any splicing apparatus suggesting a more general 
role for Sm proteins. All Sm proteins contain a common 
sequence motif in two segments, Sm1 and Sm2, separated by 
a short variable linker. This family also includes the bacterial 
Hfq (host factor Q) proteins. Hfq are also RNA-binding 
proteins, that form hexameric rings.
Length=66

 Score = 50.2 bits (121),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 36/49 (73%), Gaps = 4/49 (8%)

Query  23  VSGMLKGYDQLMNLVLDDVKESMRDDEGNETTRSLGLIVARGTLIVLIS  71
           + G LKG+DQ MNLVLDDV+E+++D E     R LGL++ RG  IVLIS
Sbjct  21  LRGTLKGFDQFMNLVLDDVEETIKDGE----VRKLGLVLIRGNNIVLIS  65



Lambda      K        H        a         alpha
   0.317    0.135    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00002443

Length=138
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426258 pfam01423, LSM, LSM domain. The LSM domain contains Sm...  74.1    2e-19


>CDD:426258 pfam01423, LSM, LSM domain.  The LSM domain contains Sm proteins 
as well as other related LSM (Like Sm) proteins. The U1, 
U2, U4/U6, and U5 small nuclear ribonucleoprotein particles 
(snRNPs) involved in pre-mRNA splicing contain seven Sm proteins 
(B/B', D1, D2, D3, E, F and G) in common, which assemble 
around the Sm site present in four of the major spliceosomal 
small nuclear RNAs. The U6 snRNP binds to the LSM (Like 
Sm) proteins. Sm proteins are also found in archaebacteria, 
which do not have any splicing apparatus suggesting a more general 
role for Sm proteins. All Sm proteins contain a common 
sequence motif in two segments, Sm1 and Sm2, separated by 
a short variable linker. This family also includes the bacterial 
Hfq (host factor Q) proteins. Hfq are also RNA-binding 
proteins, that form hexameric rings.
Length=66

 Score = 74.1 bits (183),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 37/70 (53%), Positives = 47/70 (67%), Gaps = 4/70 (6%)

Query  53   LDLSKYMDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMRDDEGNETTRSLGLIVA  112
              L K + K V V+   GRE+ G LKG+DQ MNLVLDDV+E+++D E     R LGL++ 
Sbjct  1    KFLKKLLGKRVLVELKNGRELRGTLKGFDQFMNLVLDDVEETIKDGE----VRKLGLVLI  56

Query  113  RGTLIVLISP  122
            RG  IVLISP
Sbjct  57   RGNNIVLISP  66



Lambda      K        H        a         alpha
   0.310    0.134    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00002444

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.132    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00002446

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465649 pfam18101, Pan3_PK, Pan3 Pseudokinase domain. This is ...  278     7e-97


>CDD:465649 pfam18101, Pan3_PK, Pan3 Pseudokinase domain.  This is a pseudokinase 
(PK) domain found in PAB-dependent poly(A)-specific 
ribonuclease subunit pan3. PAN3 proteins contain three prominent 
regions: an unstructured N-terminal region (N-term), a 
central PK domain, and a highly conserved C-terminal domain 
(C-term). The PAN3 PK domain has retained its ATP binding capacity, 
and this function is required for mRNA degradation 
in vivo. Analysis of Pan3 amino acids sequences show that, despite 
of retaining the general structural characteristics of 
protein kinases, the PK domain has substitutions in all the 
conserved motifs that are critical for kinase activity, such 
as in the catalytic VAIK and HRD motifs and in the Mg2+ binding 
DFG motif. However, the PAN3 PK domain has been shown 
to bind ATP. Furthermore, similar to other kinases, the ATP-binding 
site is located in the cleft between the N- and C-lobes 
of the kinase fold, however, the ATP-binding pocket is 
wider than that of typical kinases.
Length=138

 Score = 278 bits (713),  Expect = 7e-97, Method: Composition-based stats.
 Identities = 91/138 (66%), Positives = 113/138 (82%), Gaps = 0/138 (0%)

Query  116  IDVFITGISSQLMSTFDSALHLDDQLTSDLSRELENGRLVRLMAKLNFVNERPEYEHDRQ  175
            ID  +  I ++L++  D+ALH +D+L S+LSRELENGRL RL+ KL F+NERPE+E D +
Sbjct  1    IDELLPMIGARLLTELDAALHYNDELESELSRELENGRLFRLLCKLGFINERPEFEGDPR  60

Query  176  WSENGERYFLKIFRDYVFHQVDAQGDPVVDLGHVITCLNKLDAGTEEKITLISRDEQSCF  235
            WSE G+RY LK+FRDYVFHQVD QG PV+DLGHV++CLNKLDAG +EKI L SRDEQSC 
Sbjct  61   WSETGDRYMLKLFRDYVFHQVDEQGRPVLDLGHVLSCLNKLDAGVDEKIMLTSRDEQSCL  120

Query  236  IVSYKELKKALESSFQAL  253
            +VSYKELKK +ES+F  L
Sbjct  121  VVSYKELKKCIESAFGEL  138



Lambda      K        H        a         alpha
   0.321    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00007761

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465649 pfam18101, Pan3_PK, Pan3 Pseudokinase domain. This is ...  278     7e-97


>CDD:465649 pfam18101, Pan3_PK, Pan3 Pseudokinase domain.  This is a pseudokinase 
(PK) domain found in PAB-dependent poly(A)-specific 
ribonuclease subunit pan3. PAN3 proteins contain three prominent 
regions: an unstructured N-terminal region (N-term), a 
central PK domain, and a highly conserved C-terminal domain 
(C-term). The PAN3 PK domain has retained its ATP binding capacity, 
and this function is required for mRNA degradation 
in vivo. Analysis of Pan3 amino acids sequences show that, despite 
of retaining the general structural characteristics of 
protein kinases, the PK domain has substitutions in all the 
conserved motifs that are critical for kinase activity, such 
as in the catalytic VAIK and HRD motifs and in the Mg2+ binding 
DFG motif. However, the PAN3 PK domain has been shown 
to bind ATP. Furthermore, similar to other kinases, the ATP-binding 
site is located in the cleft between the N- and C-lobes 
of the kinase fold, however, the ATP-binding pocket is 
wider than that of typical kinases.
Length=138

 Score = 278 bits (713),  Expect = 7e-97, Method: Composition-based stats.
 Identities = 91/138 (66%), Positives = 113/138 (82%), Gaps = 0/138 (0%)

Query  116  IDVFITGISSQLMSTFDSALHLDDQLTSDLSRELENGRLVRLMAKLNFVNERPEYEHDRQ  175
            ID  +  I ++L++  D+ALH +D+L S+LSRELENGRL RL+ KL F+NERPE+E D +
Sbjct  1    IDELLPMIGARLLTELDAALHYNDELESELSRELENGRLFRLLCKLGFINERPEFEGDPR  60

Query  176  WSENGERYFLKIFRDYVFHQVDAQGDPVVDLGHVITCLNKLDAGTEEKITLISRDEQSCF  235
            WSE G+RY LK+FRDYVFHQVD QG PV+DLGHV++CLNKLDAG +EKI L SRDEQSC 
Sbjct  61   WSETGDRYMLKLFRDYVFHQVDEQGRPVLDLGHVLSCLNKLDAGVDEKIMLTSRDEQSCL  120

Query  236  IVSYKELKKALESSFQAL  253
            +VSYKELKK +ES+F  L
Sbjct  121  VVSYKELKKCIESAFGEL  138



Lambda      K        H        a         alpha
   0.321    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00007762

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465649 pfam18101, Pan3_PK, Pan3 Pseudokinase domain. This is ...  278     7e-97


>CDD:465649 pfam18101, Pan3_PK, Pan3 Pseudokinase domain.  This is a pseudokinase 
(PK) domain found in PAB-dependent poly(A)-specific 
ribonuclease subunit pan3. PAN3 proteins contain three prominent 
regions: an unstructured N-terminal region (N-term), a 
central PK domain, and a highly conserved C-terminal domain 
(C-term). The PAN3 PK domain has retained its ATP binding capacity, 
and this function is required for mRNA degradation 
in vivo. Analysis of Pan3 amino acids sequences show that, despite 
of retaining the general structural characteristics of 
protein kinases, the PK domain has substitutions in all the 
conserved motifs that are critical for kinase activity, such 
as in the catalytic VAIK and HRD motifs and in the Mg2+ binding 
DFG motif. However, the PAN3 PK domain has been shown 
to bind ATP. Furthermore, similar to other kinases, the ATP-binding 
site is located in the cleft between the N- and C-lobes 
of the kinase fold, however, the ATP-binding pocket is 
wider than that of typical kinases.
Length=138

 Score = 278 bits (713),  Expect = 7e-97, Method: Composition-based stats.
 Identities = 91/138 (66%), Positives = 113/138 (82%), Gaps = 0/138 (0%)

Query  116  IDVFITGISSQLMSTFDSALHLDDQLTSDLSRELENGRLVRLMAKLNFVNERPEYEHDRQ  175
            ID  +  I ++L++  D+ALH +D+L S+LSRELENGRL RL+ KL F+NERPE+E D +
Sbjct  1    IDELLPMIGARLLTELDAALHYNDELESELSRELENGRLFRLLCKLGFINERPEFEGDPR  60

Query  176  WSENGERYFLKIFRDYVFHQVDAQGDPVVDLGHVITCLNKLDAGTEEKITLISRDEQSCF  235
            WSE G+RY LK+FRDYVFHQVD QG PV+DLGHV++CLNKLDAG +EKI L SRDEQSC 
Sbjct  61   WSETGDRYMLKLFRDYVFHQVDEQGRPVLDLGHVLSCLNKLDAGVDEKIMLTSRDEQSCL  120

Query  236  IVSYKELKKALESSFQAL  253
            +VSYKELKK +ES+F  L
Sbjct  121  VVSYKELKKCIESAFGEL  138



Lambda      K        H        a         alpha
   0.321    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00002447

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396845 pfam02469, Fasciclin, Fasciclin domain. This extracell...  81.9    3e-19


>CDD:396845 pfam02469, Fasciclin, Fasciclin domain.  This extracellular domain 
is found repeated four times in grasshopper fasciclin 
I as well as in proteins from mammals, sea urchins, plants, 
yeast and bacteria.
Length=123

 Score = 81.9 bits (203),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 67/143 (47%), Gaps = 23/143 (16%)

Query  142  TILAKIIDEDDELVQFLNSTDANHTFFAPTNEAFSKIPHHCPGRDHDHDGDDDHKHHKVP  201
            +    ++ +   LV  LN +    T FAPTNEAF+K+P                      
Sbjct  4    STFVALL-KAAGLVDTLNGSQGPFTVFAPTNEAFAKLPAG------------TLNFLLKD  50

Query  202  KEVIRAIFHYHVAPNHYSAADVFHSHTVPTTLNESALGHDLPQRLAVRVGWKGLTLNYYS  261
            KE ++ +  YHV P   +++D+ +  T+ T             +L V V    +T+N  +
Sbjct  51   KEQLKNLLKYHVVPGRLTSSDLKNGGTLATLQGS---------KLRVNVTGGSVTVN-GA  100

Query  262  HIVAADIGATNGIIHGINAILIP  284
             +V ADI ATNG+IH I+ +L+P
Sbjct  101  RVVQADIEATNGVIHVIDKVLLP  123


 Score = 78.1 bits (193),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 68/150 (45%), Gaps = 27/150 (18%)

Query  297  SEFSTFTLGLYKTGLATALNKSSTPHHHGGTIFAPSNSAFKHLGLKINAFLFSPIGEKYL  356
              FSTF   L   GL   LN S  P     T+FAP+N AF  L      FL     ++ L
Sbjct  1    PGFSTFVALLKAAGLVDTLNGSQGPF----TVFAPTNEAFAKLPAGTLNFLLKD--KEQL  54

Query  357  RALLQYHIVQNRTLYSDVFYTAQGEIKPFGVKGFTHLDLPTLLHGRKLAVDVARFGPFAS  416
            + LL+YH+V  R L S                      L TL  G KL V+V       S
Sbjct  55   KNLLKYHVVPGR-LTSSDLKNGG--------------TLATL-QGSKLRVNVTG----GS  94

Query  417  LKINGFQRVAFADALAKDGTVHVVDRVLIP  446
            + +NG  RV  AD  A +G +HV+D+VL+P
Sbjct  95   VTVNG-ARVVQADIEATNGVIHVIDKVLLP  123



Lambda      K        H        a         alpha
   0.319    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 617738928


Query= TCONS_00002449

Length=514


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00002450

Length=514


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00002448

Length=514


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00007763

Length=1497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           178     2e-51
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  124     4e-34
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  104     3e-26
CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular ...  90.1    3e-22


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 178 bits (454),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 8/212 (4%)

Query  1178  CLLRVFSQYWRTPVYIYSKTALCVLTALYIGFSFFNAQNSAQGLQNQMFSIFMLMTIFGN  1237
              L R F + WR P     +    +L AL  G  F N  N   GL       F ++    +
Sbjct  1     LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGLLFFSILFNAFS  60

Query  1238  LVQQIMPNFCTQRSLYEVRERPSKTYSWKAFMAANIIVELPWNTLMAFLIFVCWYYPIGL  1297
              +  I P F  +R +   RE  S  YS  A++ A I+ ELP + L + +  +  Y+ +GL
Sbjct  61    ALSGISPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  1298  YRNAEPTDSVHERGALMFLLIWSFLLFTSTFAHMMIAGIELAETGGNLANLLFSLCLIFC  1357
               +A        R  L  L++    L  S+    + A     E    L  L+    L+  
Sbjct  120   PPSAG-------RFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLS  172

Query  1358  GVLAPPQSLPGFWIFMYRVSPFTYLVSAMLST  1389
             G   P  S+P +W ++Y ++P TY + A+ + 
Sbjct  173   GFFIPIDSMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 155 bits (393),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 67/205 (33%), Positives = 111/205 (54%), Gaps = 2/205 (1%)

Query  509  CMIRGFQRLKGDSSLTMSQLIGNFIMALVIGSVFYNLPDDTSSFYARGALLFFAVLLNAF  568
             + R F R   D SL + +LI   +MAL+ G++F NL +       R  LLFF++L NAF
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGN-QQGGLNRPGLLFFSILFNAF  59

Query  569  SSALEI-LTLYAQRPIVEKQARYAMYHPFAEAIASMLCDMPYKITNAIIFNLTLYFMTNL  627
            S+   I      +R ++ ++    +Y P A  +A +L ++P  +  ++IF L +YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  628  RREPGAFFVFLLFSFVTTLTMSMLFRTMAASSRTLSQALVPAAILILGLVIYTGFTIPTR  687
                G FF+FLL   +T L  S L   ++A + +   A     +++L L++ +GF IP  
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  688  NMLGWSRWMNYIDPIAYGFESLMVN  712
            +M  W +W+ Y++P+ Y  E+L  N
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 124 bits (314),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 0/88 (0%)

Query  727  VPSSGAYDSQPLAYRVCSTVGSVSGSRYVQGDDYLNQSFQYYKSHQWRNLGIMFGFMFFF  786
            VPS   Y++   A +VC+ VG+V G  +V GDDYL  S+ Y  SH WRN GI+  F  FF
Sbjct  1    VPSGPGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFF  60

Query  787  MFTYLTATEYISESKSKGEVLLFRRGHA  814
            +  YL ATEY S +KSKGEVL+F+RG A
Sbjct  61   LALYLIATEYNSAAKSKGEVLVFKRGKA  88


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 104 bits (261),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 56/156 (36%), Positives = 84/156 (54%), Gaps = 10/156 (6%)

Query  872   LDHVDGWVKPGTCTALMGVSGAGKTTLLDVLATRVTMGVVSGEMLVDGRP----RDQSFQ  927
             L +V   + PG   AL+G +GAGK+TLL ++A  ++     G +L+DG+       +S +
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLS--PTEGTILLDGQDLTDDERKSLR  58

Query  928   RKTGYVQQQDLHLHTTTVREALRFSALLRQPAHVPRQEKIDYVEEVIKLLGMESYADAVV  987
             ++ GYV Q        TVRE LR   LL+  +   +  +    EE ++ LG+   AD  V
Sbjct  59    KEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADRPV  115

Query  988   GVPGEGLNVEQRKRLTIGVELAAKPQLLLFLDEPTS  1023
             G     L+  QR+R+ I   L  KP+LLL LDEPT+
Sbjct  116   GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPTA  150


 Score = 103 bits (259),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 14/162 (9%)

Query  178  LRDFDGLVKSGEMLVVLGRPGSGCSTFLKTISGEMNGIYMDEKSYLNYQGIS-SKQMRKQ  236
            L++    +  GE+L ++G  G+G ST LK I+G         +  +   G   +   RK 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGL----LSPTEGTILLDGQDLTDDERKS  56

Query  237  FRGEAIYTAETDVHFPQLTVGDTLKFAALARAPRNRLPGVSREQYAVHMRDVVMAMLGLT  296
             R E  Y  +    FP+LTV + L+           L G+S+ +      +  +  LGL 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGL-------LLKGLSKREKDARA-EEALEKLGLG  108

Query  297  HTMNTRVGNDFVRGVSGGERKRVSIAEATLSGSPLQCWDNST  338
               +  VG      +SGG+R+RV+IA A L+   L   D  T
Sbjct  109  DLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149


>CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular N-terminal. 
 This domain is found at the N-terminus of ABC-transporter 
proteins from fungi, plants to higher eukaryotes. It would 
appear to be an extracellular domain.
Length=80

 Score = 90.1 bits (224),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 44/87 (51%), Gaps = 9/87 (10%)

Query  69   LARQLTRQSTRFSTSGNVENPFLETKEDSTLNPLSPNFKAKNWMKNLLALSSRDPERYPK  128
            LAR LTRQS+  S+S +        +EDS        F  + W+KNL  L   D      
Sbjct  2    LARILTRQSSS-SSSSSSPESTDPDEEDS-------EFDLRKWLKNLRRLIDEDG-YIKP  52

Query  129  RVAGVAFKNLSVHGYGSPTDYQKDVFN  155
            R  GVAFKNL+V G G+  DYQ  V N
Sbjct  53   RKLGVAFKNLTVSGVGAGADYQPTVGN  79



Lambda      K        H        a         alpha
   0.321    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1897032876


Query= TCONS_00007765

Length=1497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           178     2e-51
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  124     4e-34
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  104     3e-26
CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular ...  90.1    3e-22


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 178 bits (454),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 8/212 (4%)

Query  1178  CLLRVFSQYWRTPVYIYSKTALCVLTALYIGFSFFNAQNSAQGLQNQMFSIFMLMTIFGN  1237
              L R F + WR P     +    +L AL  G  F N  N   GL       F ++    +
Sbjct  1     LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGLLFFSILFNAFS  60

Query  1238  LVQQIMPNFCTQRSLYEVRERPSKTYSWKAFMAANIIVELPWNTLMAFLIFVCWYYPIGL  1297
              +  I P F  +R +   RE  S  YS  A++ A I+ ELP + L + +  +  Y+ +GL
Sbjct  61    ALSGISPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  1298  YRNAEPTDSVHERGALMFLLIWSFLLFTSTFAHMMIAGIELAETGGNLANLLFSLCLIFC  1357
               +A        R  L  L++    L  S+    + A     E    L  L+    L+  
Sbjct  120   PPSAG-------RFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLS  172

Query  1358  GVLAPPQSLPGFWIFMYRVSPFTYLVSAMLST  1389
             G   P  S+P +W ++Y ++P TY + A+ + 
Sbjct  173   GFFIPIDSMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 155 bits (393),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 67/205 (33%), Positives = 111/205 (54%), Gaps = 2/205 (1%)

Query  509  CMIRGFQRLKGDSSLTMSQLIGNFIMALVIGSVFYNLPDDTSSFYARGALLFFAVLLNAF  568
             + R F R   D SL + +LI   +MAL+ G++F NL +       R  LLFF++L NAF
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGN-QQGGLNRPGLLFFSILFNAF  59

Query  569  SSALEI-LTLYAQRPIVEKQARYAMYHPFAEAIASMLCDMPYKITNAIIFNLTLYFMTNL  627
            S+   I      +R ++ ++    +Y P A  +A +L ++P  +  ++IF L +YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  628  RREPGAFFVFLLFSFVTTLTMSMLFRTMAASSRTLSQALVPAAILILGLVIYTGFTIPTR  687
                G FF+FLL   +T L  S L   ++A + +   A     +++L L++ +GF IP  
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  688  NMLGWSRWMNYIDPIAYGFESLMVN  712
            +M  W +W+ Y++P+ Y  E+L  N
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 124 bits (314),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 0/88 (0%)

Query  727  VPSSGAYDSQPLAYRVCSTVGSVSGSRYVQGDDYLNQSFQYYKSHQWRNLGIMFGFMFFF  786
            VPS   Y++   A +VC+ VG+V G  +V GDDYL  S+ Y  SH WRN GI+  F  FF
Sbjct  1    VPSGPGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFF  60

Query  787  MFTYLTATEYISESKSKGEVLLFRRGHA  814
            +  YL ATEY S +KSKGEVL+F+RG A
Sbjct  61   LALYLIATEYNSAAKSKGEVLVFKRGKA  88


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 104 bits (261),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 56/156 (36%), Positives = 84/156 (54%), Gaps = 10/156 (6%)

Query  872   LDHVDGWVKPGTCTALMGVSGAGKTTLLDVLATRVTMGVVSGEMLVDGRP----RDQSFQ  927
             L +V   + PG   AL+G +GAGK+TLL ++A  ++     G +L+DG+       +S +
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLS--PTEGTILLDGQDLTDDERKSLR  58

Query  928   RKTGYVQQQDLHLHTTTVREALRFSALLRQPAHVPRQEKIDYVEEVIKLLGMESYADAVV  987
             ++ GYV Q        TVRE LR   LL+  +   +  +    EE ++ LG+   AD  V
Sbjct  59    KEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADRPV  115

Query  988   GVPGEGLNVEQRKRLTIGVELAAKPQLLLFLDEPTS  1023
             G     L+  QR+R+ I   L  KP+LLL LDEPT+
Sbjct  116   GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPTA  150


 Score = 103 bits (259),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 14/162 (9%)

Query  178  LRDFDGLVKSGEMLVVLGRPGSGCSTFLKTISGEMNGIYMDEKSYLNYQGIS-SKQMRKQ  236
            L++    +  GE+L ++G  G+G ST LK I+G         +  +   G   +   RK 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGL----LSPTEGTILLDGQDLTDDERKS  56

Query  237  FRGEAIYTAETDVHFPQLTVGDTLKFAALARAPRNRLPGVSREQYAVHMRDVVMAMLGLT  296
             R E  Y  +    FP+LTV + L+           L G+S+ +      +  +  LGL 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGL-------LLKGLSKREKDARA-EEALEKLGLG  108

Query  297  HTMNTRVGNDFVRGVSGGERKRVSIAEATLSGSPLQCWDNST  338
               +  VG      +SGG+R+RV+IA A L+   L   D  T
Sbjct  109  DLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149


>CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular N-terminal. 
 This domain is found at the N-terminus of ABC-transporter 
proteins from fungi, plants to higher eukaryotes. It would 
appear to be an extracellular domain.
Length=80

 Score = 90.1 bits (224),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 44/87 (51%), Gaps = 9/87 (10%)

Query  69   LARQLTRQSTRFSTSGNVENPFLETKEDSTLNPLSPNFKAKNWMKNLLALSSRDPERYPK  128
            LAR LTRQS+  S+S +        +EDS        F  + W+KNL  L   D      
Sbjct  2    LARILTRQSSS-SSSSSSPESTDPDEEDS-------EFDLRKWLKNLRRLIDEDG-YIKP  52

Query  129  RVAGVAFKNLSVHGYGSPTDYQKDVFN  155
            R  GVAFKNL+V G G+  DYQ  V N
Sbjct  53   RKLGVAFKNLTVSGVGAGADYQPTVGN  79



Lambda      K        H        a         alpha
   0.321    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1897032876


Query= TCONS_00007764

Length=1497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           178     2e-51
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  124     4e-34
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  104     3e-26
CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular ...  90.1    3e-22


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 178 bits (454),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 8/212 (4%)

Query  1178  CLLRVFSQYWRTPVYIYSKTALCVLTALYIGFSFFNAQNSAQGLQNQMFSIFMLMTIFGN  1237
              L R F + WR P     +    +L AL  G  F N  N   GL       F ++    +
Sbjct  1     LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGLLFFSILFNAFS  60

Query  1238  LVQQIMPNFCTQRSLYEVRERPSKTYSWKAFMAANIIVELPWNTLMAFLIFVCWYYPIGL  1297
              +  I P F  +R +   RE  S  YS  A++ A I+ ELP + L + +  +  Y+ +GL
Sbjct  61    ALSGISPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  1298  YRNAEPTDSVHERGALMFLLIWSFLLFTSTFAHMMIAGIELAETGGNLANLLFSLCLIFC  1357
               +A        R  L  L++    L  S+    + A     E    L  L+    L+  
Sbjct  120   PPSAG-------RFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLS  172

Query  1358  GVLAPPQSLPGFWIFMYRVSPFTYLVSAMLST  1389
             G   P  S+P +W ++Y ++P TY + A+ + 
Sbjct  173   GFFIPIDSMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 155 bits (393),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 67/205 (33%), Positives = 111/205 (54%), Gaps = 2/205 (1%)

Query  509  CMIRGFQRLKGDSSLTMSQLIGNFIMALVIGSVFYNLPDDTSSFYARGALLFFAVLLNAF  568
             + R F R   D SL + +LI   +MAL+ G++F NL +       R  LLFF++L NAF
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGN-QQGGLNRPGLLFFSILFNAF  59

Query  569  SSALEI-LTLYAQRPIVEKQARYAMYHPFAEAIASMLCDMPYKITNAIIFNLTLYFMTNL  627
            S+   I      +R ++ ++    +Y P A  +A +L ++P  +  ++IF L +YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  628  RREPGAFFVFLLFSFVTTLTMSMLFRTMAASSRTLSQALVPAAILILGLVIYTGFTIPTR  687
                G FF+FLL   +T L  S L   ++A + +   A     +++L L++ +GF IP  
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  688  NMLGWSRWMNYIDPIAYGFESLMVN  712
            +M  W +W+ Y++P+ Y  E+L  N
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 124 bits (314),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 0/88 (0%)

Query  727  VPSSGAYDSQPLAYRVCSTVGSVSGSRYVQGDDYLNQSFQYYKSHQWRNLGIMFGFMFFF  786
            VPS   Y++   A +VC+ VG+V G  +V GDDYL  S+ Y  SH WRN GI+  F  FF
Sbjct  1    VPSGPGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFF  60

Query  787  MFTYLTATEYISESKSKGEVLLFRRGHA  814
            +  YL ATEY S +KSKGEVL+F+RG A
Sbjct  61   LALYLIATEYNSAAKSKGEVLVFKRGKA  88


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 104 bits (261),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 56/156 (36%), Positives = 84/156 (54%), Gaps = 10/156 (6%)

Query  872   LDHVDGWVKPGTCTALMGVSGAGKTTLLDVLATRVTMGVVSGEMLVDGRP----RDQSFQ  927
             L +V   + PG   AL+G +GAGK+TLL ++A  ++     G +L+DG+       +S +
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLS--PTEGTILLDGQDLTDDERKSLR  58

Query  928   RKTGYVQQQDLHLHTTTVREALRFSALLRQPAHVPRQEKIDYVEEVIKLLGMESYADAVV  987
             ++ GYV Q        TVRE LR   LL+  +   +  +    EE ++ LG+   AD  V
Sbjct  59    KEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADRPV  115

Query  988   GVPGEGLNVEQRKRLTIGVELAAKPQLLLFLDEPTS  1023
             G     L+  QR+R+ I   L  KP+LLL LDEPT+
Sbjct  116   GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPTA  150


 Score = 103 bits (259),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 14/162 (9%)

Query  178  LRDFDGLVKSGEMLVVLGRPGSGCSTFLKTISGEMNGIYMDEKSYLNYQGIS-SKQMRKQ  236
            L++    +  GE+L ++G  G+G ST LK I+G         +  +   G   +   RK 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGL----LSPTEGTILLDGQDLTDDERKS  56

Query  237  FRGEAIYTAETDVHFPQLTVGDTLKFAALARAPRNRLPGVSREQYAVHMRDVVMAMLGLT  296
             R E  Y  +    FP+LTV + L+           L G+S+ +      +  +  LGL 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGL-------LLKGLSKREKDARA-EEALEKLGLG  108

Query  297  HTMNTRVGNDFVRGVSGGERKRVSIAEATLSGSPLQCWDNST  338
               +  VG      +SGG+R+RV+IA A L+   L   D  T
Sbjct  109  DLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149


>CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular N-terminal. 
 This domain is found at the N-terminus of ABC-transporter 
proteins from fungi, plants to higher eukaryotes. It would 
appear to be an extracellular domain.
Length=80

 Score = 90.1 bits (224),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 44/87 (51%), Gaps = 9/87 (10%)

Query  69   LARQLTRQSTRFSTSGNVENPFLETKEDSTLNPLSPNFKAKNWMKNLLALSSRDPERYPK  128
            LAR LTRQS+  S+S +        +EDS        F  + W+KNL  L   D      
Sbjct  2    LARILTRQSSS-SSSSSSPESTDPDEEDS-------EFDLRKWLKNLRRLIDEDG-YIKP  52

Query  129  RVAGVAFKNLSVHGYGSPTDYQKDVFN  155
            R  GVAFKNL+V G G+  DYQ  V N
Sbjct  53   RKLGVAFKNLTVSGVGAGADYQPTVGN  79



Lambda      K        H        a         alpha
   0.321    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0754    0.140     1.90     42.6     43.6 

Effective search space used: 1897032876


Query= TCONS_00002451

Length=1497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           178     2e-51
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  124     4e-34
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  104     3e-26
CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular ...  90.1    3e-22


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 178 bits (454),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 8/212 (4%)

Query  1178  CLLRVFSQYWRTPVYIYSKTALCVLTALYIGFSFFNAQNSAQGLQNQMFSIFMLMTIFGN  1237
              L R F + WR P     +    +L AL  G  F N  N   GL       F ++    +
Sbjct  1     LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGLLFFSILFNAFS  60

Query  1238  LVQQIMPNFCTQRSLYEVRERPSKTYSWKAFMAANIIVELPWNTLMAFLIFVCWYYPIGL  1297
              +  I P F  +R +   RE  S  YS  A++ A I+ ELP + L + +  +  Y+ +GL
Sbjct  61    ALSGISPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  1298  YRNAEPTDSVHERGALMFLLIWSFLLFTSTFAHMMIAGIELAETGGNLANLLFSLCLIFC  1357
               +A        R  L  L++    L  S+    + A     E    L  L+    L+  
Sbjct  120   PPSAG-------RFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLS  172

Query  1358  GVLAPPQSLPGFWIFMYRVSPFTYLVSAMLST  1389
             G   P  S+P +W ++Y ++P TY + A+ + 
Sbjct  173   GFFIPIDSMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 155 bits (393),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 67/205 (33%), Positives = 111/205 (54%), Gaps = 2/205 (1%)

Query  509  CMIRGFQRLKGDSSLTMSQLIGNFIMALVIGSVFYNLPDDTSSFYARGALLFFAVLLNAF  568
             + R F R   D SL + +LI   +MAL+ G++F NL +       R  LLFF++L NAF
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGN-QQGGLNRPGLLFFSILFNAF  59

Query  569  SSALEI-LTLYAQRPIVEKQARYAMYHPFAEAIASMLCDMPYKITNAIIFNLTLYFMTNL  627
            S+   I      +R ++ ++    +Y P A  +A +L ++P  +  ++IF L +YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  628  RREPGAFFVFLLFSFVTTLTMSMLFRTMAASSRTLSQALVPAAILILGLVIYTGFTIPTR  687
                G FF+FLL   +T L  S L   ++A + +   A     +++L L++ +GF IP  
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  688  NMLGWSRWMNYIDPIAYGFESLMVN  712
            +M  W +W+ Y++P+ Y  E+L  N
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 124 bits (314),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 0/88 (0%)

Query  727  VPSSGAYDSQPLAYRVCSTVGSVSGSRYVQGDDYLNQSFQYYKSHQWRNLGIMFGFMFFF  786
            VPS   Y++   A +VC+ VG+V G  +V GDDYL  S+ Y  SH WRN GI+  F  FF
Sbjct  1    VPSGPGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFF  60

Query  787  MFTYLTATEYISESKSKGEVLLFRRGHA  814
            +  YL ATEY S +KSKGEVL+F+RG A
Sbjct  61   LALYLIATEYNSAAKSKGEVLVFKRGKA  88


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 104 bits (261),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 56/156 (36%), Positives = 84/156 (54%), Gaps = 10/156 (6%)

Query  872   LDHVDGWVKPGTCTALMGVSGAGKTTLLDVLATRVTMGVVSGEMLVDGRP----RDQSFQ  927
             L +V   + PG   AL+G +GAGK+TLL ++A  ++     G +L+DG+       +S +
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLS--PTEGTILLDGQDLTDDERKSLR  58

Query  928   RKTGYVQQQDLHLHTTTVREALRFSALLRQPAHVPRQEKIDYVEEVIKLLGMESYADAVV  987
             ++ GYV Q        TVRE LR   LL+  +   +  +    EE ++ LG+   AD  V
Sbjct  59    KEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADRPV  115

Query  988   GVPGEGLNVEQRKRLTIGVELAAKPQLLLFLDEPTS  1023
             G     L+  QR+R+ I   L  KP+LLL LDEPT+
Sbjct  116   GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPTA  150


 Score = 103 bits (259),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 14/162 (9%)

Query  178  LRDFDGLVKSGEMLVVLGRPGSGCSTFLKTISGEMNGIYMDEKSYLNYQGIS-SKQMRKQ  236
            L++    +  GE+L ++G  G+G ST LK I+G         +  +   G   +   RK 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGL----LSPTEGTILLDGQDLTDDERKS  56

Query  237  FRGEAIYTAETDVHFPQLTVGDTLKFAALARAPRNRLPGVSREQYAVHMRDVVMAMLGLT  296
             R E  Y  +    FP+LTV + L+           L G+S+ +      +  +  LGL 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGL-------LLKGLSKREKDARA-EEALEKLGLG  108

Query  297  HTMNTRVGNDFVRGVSGGERKRVSIAEATLSGSPLQCWDNST  338
               +  VG      +SGG+R+RV+IA A L+   L   D  T
Sbjct  109  DLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149


>CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular N-terminal. 
 This domain is found at the N-terminus of ABC-transporter 
proteins from fungi, plants to higher eukaryotes. It would 
appear to be an extracellular domain.
Length=80

 Score = 90.1 bits (224),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 44/87 (51%), Gaps = 9/87 (10%)

Query  69   LARQLTRQSTRFSTSGNVENPFLETKEDSTLNPLSPNFKAKNWMKNLLALSSRDPERYPK  128
            LAR LTRQS+  S+S +        +EDS        F  + W+KNL  L   D      
Sbjct  2    LARILTRQSSS-SSSSSSPESTDPDEEDS-------EFDLRKWLKNLRRLIDEDG-YIKP  52

Query  129  RVAGVAFKNLSVHGYGSPTDYQKDVFN  155
            R  GVAFKNL+V G G+  DYQ  V N
Sbjct  53   RKLGVAFKNLTVSGVGAGADYQPTVGN  79



Lambda      K        H        a         alpha
   0.321    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1897032876


Query= TCONS_00002453

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  103     1e-26
CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular ...  87.8    6e-22


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 103 bits (259),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 14/162 (9%)

Query  178  LRDFDGLVKSGEMLVVLGRPGSGCSTFLKTISGEMNGIYMDEKSYLNYQGIS-SKQMRKQ  236
            L++    +  GE+L ++G  G+G ST LK I+G         +  +   G   +   RK 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGL----LSPTEGTILLDGQDLTDDERKS  56

Query  237  FRGEAIYTAETDVHFPQLTVGDTLKFAALARAPRNRLPGVSREQYAVHMRDVVMAMLGLT  296
             R E  Y  +    FP+LTV + L+           L G+S+ +      +  +  LGL 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGL-------LLKGLSKREKDARA-EEALEKLGLG  108

Query  297  HTMNTRVGNDFVRGVSGGERKRVSIAEATLSGSPLQCWDNST  338
               +  VG      +SGG+R+RV+IA A L+   L   D  T
Sbjct  109  DLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149


>CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular N-terminal. 
 This domain is found at the N-terminus of ABC-transporter 
proteins from fungi, plants to higher eukaryotes. It would 
appear to be an extracellular domain.
Length=80

 Score = 87.8 bits (218),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 44/87 (51%), Gaps = 9/87 (10%)

Query  69   LARQLTRQSTRFSTSGNVENPFLETKEDSTLNPLSPNFKAKNWMKNLLALSSRDPERYPK  128
            LAR LTRQS+  S+S +        +EDS        F  + W+KNL  L   D      
Sbjct  2    LARILTRQSSS-SSSSSSPESTDPDEEDS-------EFDLRKWLKNLRRLIDEDG-YIKP  52

Query  129  RVAGVAFKNLSVHGYGSPTDYQKDVFN  155
            R  GVAFKNL+V G G+  DYQ  V N
Sbjct  53   RKLGVAFKNLTVSGVGAGADYQPTVGN  79



Lambda      K        H        a         alpha
   0.315    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00002452

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  103     1e-26
CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular ...  87.8    6e-22


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 103 bits (259),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 14/162 (9%)

Query  178  LRDFDGLVKSGEMLVVLGRPGSGCSTFLKTISGEMNGIYMDEKSYLNYQGIS-SKQMRKQ  236
            L++    +  GE+L ++G  G+G ST LK I+G         +  +   G   +   RK 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGL----LSPTEGTILLDGQDLTDDERKS  56

Query  237  FRGEAIYTAETDVHFPQLTVGDTLKFAALARAPRNRLPGVSREQYAVHMRDVVMAMLGLT  296
             R E  Y  +    FP+LTV + L+           L G+S+ +      +  +  LGL 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGL-------LLKGLSKREKDARA-EEALEKLGLG  108

Query  297  HTMNTRVGNDFVRGVSGGERKRVSIAEATLSGSPLQCWDNST  338
               +  VG      +SGG+R+RV+IA A L+   L   D  T
Sbjct  109  DLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149


>CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular N-terminal. 
 This domain is found at the N-terminus of ABC-transporter 
proteins from fungi, plants to higher eukaryotes. It would 
appear to be an extracellular domain.
Length=80

 Score = 87.8 bits (218),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 44/87 (51%), Gaps = 9/87 (10%)

Query  69   LARQLTRQSTRFSTSGNVENPFLETKEDSTLNPLSPNFKAKNWMKNLLALSSRDPERYPK  128
            LAR LTRQS+  S+S +        +EDS        F  + W+KNL  L   D      
Sbjct  2    LARILTRQSSS-SSSSSSPESTDPDEEDS-------EFDLRKWLKNLRRLIDEDG-YIKP  52

Query  129  RVAGVAFKNLSVHGYGSPTDYQKDVFN  155
            R  GVAFKNL+V G G+  DYQ  V N
Sbjct  53   RKLGVAFKNLTVSGVGAGADYQPTVGN  79



Lambda      K        H        a         alpha
   0.315    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00002457

Length=936
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           171     3e-49
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  124     4e-34
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  104     2e-26


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 171 bits (435),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 8/212 (4%)

Query  617  CLLRVFSQYWRTPVYIYSKTALCVLTALYIGFSFFNAQNSAQGLQNQMFSIFMLMTIFGN  676
             L R F + WR P     +    +L AL  G  F N  N   GL       F ++    +
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGLLFFSILFNAFS  60

Query  677  LVQQIMPNFCTQRSLYEVRERPSKTYSWKAFMAANIIVELPWNTLMAFLIFVCWYYPIGL  736
             +  I P F  +R +   RE  S  YS  A++ A I+ ELP + L + +  +  Y+ +GL
Sbjct  61   ALSGISPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  737  YRNAEPTDSVHERGALMFLLIWSFLLFTSTFAHMMIAGIELAETGGNLANLLFSLCLIFC  796
              +A        R  L  L++    L  S+    + A     E    L  L+    L+  
Sbjct  120  PPSAG-------RFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLS  172

Query  797  GVLAPPQSLPGFWIFMYRVSPFTYLVSAMLST  828
            G   P  S+P +W ++Y ++P TY + A+ + 
Sbjct  173  GFFIPIDSMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 101 bits (255),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 74/139 (53%), Gaps = 0/139 (0%)

Query  13   ILTLYAQRPIVEKQARYAMYHPFAEAIASMLCDMPYKITNAIIFNLTLYFMTNLRREPGA  72
                  +R ++ ++    +Y P A  +A +L ++P  +  ++IF L +YFM  L    G 
Sbjct  66   SPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGLPPSAGR  125

Query  73   FFVFLLFSFVTTLTMSMLFRTMAASSRTLSQALVPAAILILGLVIYTGFTIPTRNMLGWS  132
            FF+FLL   +T L  S L   ++A + +   A     +++L L++ +GF IP  +M  W 
Sbjct  126  FFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPIDSMPVWW  185

Query  133  RWMNYIDPIAYGFESLMVN  151
            +W+ Y++P+ Y  E+L  N
Sbjct  186  QWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 124 bits (313),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 0/88 (0%)

Query  166  VPSSGAYDSQPLAYRVCSTVGSVSGSRYVQGDDYLNQSFQYYKSHQWRNLGIMFGFMFFF  225
            VPS   Y++   A +VC+ VG+V G  +V GDDYL  S+ Y  SH WRN GI+  F  FF
Sbjct  1    VPSGPGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFF  60

Query  226  MFTYLTATEYISESKSKGEVLLFRRGHA  253
            +  YL ATEY S +KSKGEVL+F+RG A
Sbjct  61   LALYLIATEYNSAAKSKGEVLVFKRGKA  88


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 104 bits (261),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 56/156 (36%), Positives = 84/156 (54%), Gaps = 10/156 (6%)

Query  311  LDHVDGWVKPGTCTALMGVSGAGKTTLLDVLATRVTMGVVSGEMLVDGRP----RDQSFQ  366
            L +V   + PG   AL+G +GAGK+TLL ++A  ++     G +L+DG+       +S +
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLS--PTEGTILLDGQDLTDDERKSLR  58

Query  367  RKTGYVQQQDLHLHTTTVREALRFSALLRQPAHVPRQEKIDYVEEVIKLLGMESYADAVV  426
            ++ GYV Q        TVRE LR   LL+  +   +  +    EE ++ LG+   AD  V
Sbjct  59   KEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADRPV  115

Query  427  GVPGEGLNVEQRKRLTIGVELAAKPQLLLFLDEPTS  462
            G     L+  QR+R+ I   L  KP+LLL LDEPT+
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPTA  150



Lambda      K        H        a         alpha
   0.324    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1207267274


Query= TCONS_00007766

Length=1092
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           170     5e-49
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  124     4e-34
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  104     2e-26


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 170 bits (434),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 8/212 (4%)

Query  773  CLLRVFSQYWRTPVYIYSKTALCVLTALYIGFSFFNAQNSAQGLQNQMFSIFMLMTIFGN  832
             L R F + WR P     +    +L AL  G  F N  N   GL       F ++    +
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGLLFFSILFNAFS  60

Query  833  LVQQIMPNFCTQRSLYEVRERPSKTYSWKAFMAANIIVELPWNTLMAFLIFVCWYYPIGL  892
             +  I P F  +R +   RE  S  YS  A++ A I+ ELP + L + +  +  Y+ +GL
Sbjct  61   ALSGISPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  893  YRNAEPTDSVHERGALMFLLIWSFLLFTSTFAHMMIAGIELAETGGNLANLLFSLCLIFC  952
              +A        R  L  L++    L  S+    + A     E    L  L+    L+  
Sbjct  120  PPSAG-------RFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLS  172

Query  953  GVLAPPQSLPGFWIFMYRVSPFTYLVSAMLST  984
            G   P  S+P +W ++Y ++P TY + A+ + 
Sbjct  173  GFFIPIDSMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 149 bits (378),  Expect = 2e-41, Method: Composition-based stats.
 Identities = 67/205 (33%), Positives = 111/205 (54%), Gaps = 2/205 (1%)

Query  104  CMIRGFQRLKGDSSLTMSQLIGNFIMALVIGSVFYNLPDDTSSFYARGALLFFAVLLNAF  163
             + R F R   D SL + +LI   +MAL+ G++F NL +       R  LLFF++L NAF
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGN-QQGGLNRPGLLFFSILFNAF  59

Query  164  SSALEI-LTLYAQRPIVEKQARYAMYHPFAEAIASMLCDMPYKITNAIIFNLTLYFMTNL  222
            S+   I      +R ++ ++    +Y P A  +A +L ++P  +  ++IF L +YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  223  RREPGAFFVFLLFSFVTTLTMSMLFRTMAASSRTLSQALVPAAILILGLVIYTGFTIPTR  282
                G FF+FLL   +T L  S L   ++A + +   A     +++L L++ +GF IP  
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  283  NMLGWSRWMNYIDPIAYGFESLMVN  307
            +M  W +W+ Y++P+ Y  E+L  N
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 124 bits (313),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 0/88 (0%)

Query  322  VPSSGAYDSQPLAYRVCSTVGSVSGSRYVQGDDYLNQSFQYYKSHQWRNLGIMFGFMFFF  381
            VPS   Y++   A +VC+ VG+V G  +V GDDYL  S+ Y  SH WRN GI+  F  FF
Sbjct  1    VPSGPGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFF  60

Query  382  MFTYLTATEYISESKSKGEVLLFRRGHA  409
            +  YL ATEY S +KSKGEVL+F+RG A
Sbjct  61   LALYLIATEYNSAAKSKGEVLVFKRGKA  88


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 104 bits (261),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 56/156 (36%), Positives = 84/156 (54%), Gaps = 10/156 (6%)

Query  467  LDHVDGWVKPGTCTALMGVSGAGKTTLLDVLATRVTMGVVSGEMLVDGRP----RDQSFQ  522
            L +V   + PG   AL+G +GAGK+TLL ++A  ++     G +L+DG+       +S +
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLS--PTEGTILLDGQDLTDDERKSLR  58

Query  523  RKTGYVQQQDLHLHTTTVREALRFSALLRQPAHVPRQEKIDYVEEVIKLLGMESYADAVV  582
            ++ GYV Q        TVRE LR   LL+  +   +  +    EE ++ LG+   AD  V
Sbjct  59   KEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADRPV  115

Query  583  GVPGEGLNVEQRKRLTIGVELAAKPQLLLFLDEPTS  618
            G     L+  QR+R+ I   L  KP+LLL LDEPT+
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPTA  150



Lambda      K        H        a         alpha
   0.323    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1389256810


Query= TCONS_00002455

Length=1497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           178     2e-51
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  124     4e-34
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  104     3e-26
CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular ...  90.1    3e-22


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 178 bits (454),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 8/212 (4%)

Query  1178  CLLRVFSQYWRTPVYIYSKTALCVLTALYIGFSFFNAQNSAQGLQNQMFSIFMLMTIFGN  1237
              L R F + WR P     +    +L AL  G  F N  N   GL       F ++    +
Sbjct  1     LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGLLFFSILFNAFS  60

Query  1238  LVQQIMPNFCTQRSLYEVRERPSKTYSWKAFMAANIIVELPWNTLMAFLIFVCWYYPIGL  1297
              +  I P F  +R +   RE  S  YS  A++ A I+ ELP + L + +  +  Y+ +GL
Sbjct  61    ALSGISPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  1298  YRNAEPTDSVHERGALMFLLIWSFLLFTSTFAHMMIAGIELAETGGNLANLLFSLCLIFC  1357
               +A        R  L  L++    L  S+    + A     E    L  L+    L+  
Sbjct  120   PPSAG-------RFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLS  172

Query  1358  GVLAPPQSLPGFWIFMYRVSPFTYLVSAMLST  1389
             G   P  S+P +W ++Y ++P TY + A+ + 
Sbjct  173   GFFIPIDSMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 155 bits (393),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 67/205 (33%), Positives = 111/205 (54%), Gaps = 2/205 (1%)

Query  509  CMIRGFQRLKGDSSLTMSQLIGNFIMALVIGSVFYNLPDDTSSFYARGALLFFAVLLNAF  568
             + R F R   D SL + +LI   +MAL+ G++F NL +       R  LLFF++L NAF
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGN-QQGGLNRPGLLFFSILFNAF  59

Query  569  SSALEI-LTLYAQRPIVEKQARYAMYHPFAEAIASMLCDMPYKITNAIIFNLTLYFMTNL  627
            S+   I      +R ++ ++    +Y P A  +A +L ++P  +  ++IF L +YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  628  RREPGAFFVFLLFSFVTTLTMSMLFRTMAASSRTLSQALVPAAILILGLVIYTGFTIPTR  687
                G FF+FLL   +T L  S L   ++A + +   A     +++L L++ +GF IP  
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  688  NMLGWSRWMNYIDPIAYGFESLMVN  712
            +M  W +W+ Y++P+ Y  E+L  N
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 124 bits (314),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 0/88 (0%)

Query  727  VPSSGAYDSQPLAYRVCSTVGSVSGSRYVQGDDYLNQSFQYYKSHQWRNLGIMFGFMFFF  786
            VPS   Y++   A +VC+ VG+V G  +V GDDYL  S+ Y  SH WRN GI+  F  FF
Sbjct  1    VPSGPGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFF  60

Query  787  MFTYLTATEYISESKSKGEVLLFRRGHA  814
            +  YL ATEY S +KSKGEVL+F+RG A
Sbjct  61   LALYLIATEYNSAAKSKGEVLVFKRGKA  88


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 104 bits (261),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 56/156 (36%), Positives = 84/156 (54%), Gaps = 10/156 (6%)

Query  872   LDHVDGWVKPGTCTALMGVSGAGKTTLLDVLATRVTMGVVSGEMLVDGRP----RDQSFQ  927
             L +V   + PG   AL+G +GAGK+TLL ++A  ++     G +L+DG+       +S +
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLS--PTEGTILLDGQDLTDDERKSLR  58

Query  928   RKTGYVQQQDLHLHTTTVREALRFSALLRQPAHVPRQEKIDYVEEVIKLLGMESYADAVV  987
             ++ GYV Q        TVRE LR   LL+  +   +  +    EE ++ LG+   AD  V
Sbjct  59    KEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADRPV  115

Query  988   GVPGEGLNVEQRKRLTIGVELAAKPQLLLFLDEPTS  1023
             G     L+  QR+R+ I   L  KP+LLL LDEPT+
Sbjct  116   GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPTA  150


 Score = 103 bits (259),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 14/162 (9%)

Query  178  LRDFDGLVKSGEMLVVLGRPGSGCSTFLKTISGEMNGIYMDEKSYLNYQGIS-SKQMRKQ  236
            L++    +  GE+L ++G  G+G ST LK I+G         +  +   G   +   RK 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGL----LSPTEGTILLDGQDLTDDERKS  56

Query  237  FRGEAIYTAETDVHFPQLTVGDTLKFAALARAPRNRLPGVSREQYAVHMRDVVMAMLGLT  296
             R E  Y  +    FP+LTV + L+           L G+S+ +      +  +  LGL 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGL-------LLKGLSKREKDARA-EEALEKLGLG  108

Query  297  HTMNTRVGNDFVRGVSGGERKRVSIAEATLSGSPLQCWDNST  338
               +  VG      +SGG+R+RV+IA A L+   L   D  T
Sbjct  109  DLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149


>CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular N-terminal. 
 This domain is found at the N-terminus of ABC-transporter 
proteins from fungi, plants to higher eukaryotes. It would 
appear to be an extracellular domain.
Length=80

 Score = 90.1 bits (224),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 44/87 (51%), Gaps = 9/87 (10%)

Query  69   LARQLTRQSTRFSTSGNVENPFLETKEDSTLNPLSPNFKAKNWMKNLLALSSRDPERYPK  128
            LAR LTRQS+  S+S +        +EDS        F  + W+KNL  L   D      
Sbjct  2    LARILTRQSSS-SSSSSSPESTDPDEEDS-------EFDLRKWLKNLRRLIDEDG-YIKP  52

Query  129  RVAGVAFKNLSVHGYGSPTDYQKDVFN  155
            R  GVAFKNL+V G G+  DYQ  V N
Sbjct  53   RKLGVAFKNLTVSGVGAGADYQPTVGN  79



Lambda      K        H        a         alpha
   0.321    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1897032876


Query= TCONS_00002456

Length=1497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           178     2e-51
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  124     4e-34
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  104     3e-26
CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular ...  90.1    3e-22


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 178 bits (454),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 8/212 (4%)

Query  1178  CLLRVFSQYWRTPVYIYSKTALCVLTALYIGFSFFNAQNSAQGLQNQMFSIFMLMTIFGN  1237
              L R F + WR P     +    +L AL  G  F N  N   GL       F ++    +
Sbjct  1     LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGLLFFSILFNAFS  60

Query  1238  LVQQIMPNFCTQRSLYEVRERPSKTYSWKAFMAANIIVELPWNTLMAFLIFVCWYYPIGL  1297
              +  I P F  +R +   RE  S  YS  A++ A I+ ELP + L + +  +  Y+ +GL
Sbjct  61    ALSGISPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  1298  YRNAEPTDSVHERGALMFLLIWSFLLFTSTFAHMMIAGIELAETGGNLANLLFSLCLIFC  1357
               +A        R  L  L++    L  S+    + A     E    L  L+    L+  
Sbjct  120   PPSAG-------RFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLS  172

Query  1358  GVLAPPQSLPGFWIFMYRVSPFTYLVSAMLST  1389
             G   P  S+P +W ++Y ++P TY + A+ + 
Sbjct  173   GFFIPIDSMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 155 bits (393),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 67/205 (33%), Positives = 111/205 (54%), Gaps = 2/205 (1%)

Query  509  CMIRGFQRLKGDSSLTMSQLIGNFIMALVIGSVFYNLPDDTSSFYARGALLFFAVLLNAF  568
             + R F R   D SL + +LI   +MAL+ G++F NL +       R  LLFF++L NAF
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGN-QQGGLNRPGLLFFSILFNAF  59

Query  569  SSALEI-LTLYAQRPIVEKQARYAMYHPFAEAIASMLCDMPYKITNAIIFNLTLYFMTNL  627
            S+   I      +R ++ ++    +Y P A  +A +L ++P  +  ++IF L +YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  628  RREPGAFFVFLLFSFVTTLTMSMLFRTMAASSRTLSQALVPAAILILGLVIYTGFTIPTR  687
                G FF+FLL   +T L  S L   ++A + +   A     +++L L++ +GF IP  
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  688  NMLGWSRWMNYIDPIAYGFESLMVN  712
            +M  W +W+ Y++P+ Y  E+L  N
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 124 bits (314),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 0/88 (0%)

Query  727  VPSSGAYDSQPLAYRVCSTVGSVSGSRYVQGDDYLNQSFQYYKSHQWRNLGIMFGFMFFF  786
            VPS   Y++   A +VC+ VG+V G  +V GDDYL  S+ Y  SH WRN GI+  F  FF
Sbjct  1    VPSGPGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFF  60

Query  787  MFTYLTATEYISESKSKGEVLLFRRGHA  814
            +  YL ATEY S +KSKGEVL+F+RG A
Sbjct  61   LALYLIATEYNSAAKSKGEVLVFKRGKA  88


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 104 bits (261),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 56/156 (36%), Positives = 84/156 (54%), Gaps = 10/156 (6%)

Query  872   LDHVDGWVKPGTCTALMGVSGAGKTTLLDVLATRVTMGVVSGEMLVDGRP----RDQSFQ  927
             L +V   + PG   AL+G +GAGK+TLL ++A  ++     G +L+DG+       +S +
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLS--PTEGTILLDGQDLTDDERKSLR  58

Query  928   RKTGYVQQQDLHLHTTTVREALRFSALLRQPAHVPRQEKIDYVEEVIKLLGMESYADAVV  987
             ++ GYV Q        TVRE LR   LL+  +   +  +    EE ++ LG+   AD  V
Sbjct  59    KEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADRPV  115

Query  988   GVPGEGLNVEQRKRLTIGVELAAKPQLLLFLDEPTS  1023
             G     L+  QR+R+ I   L  KP+LLL LDEPT+
Sbjct  116   GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPTA  150


 Score = 103 bits (259),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 14/162 (9%)

Query  178  LRDFDGLVKSGEMLVVLGRPGSGCSTFLKTISGEMNGIYMDEKSYLNYQGIS-SKQMRKQ  236
            L++    +  GE+L ++G  G+G ST LK I+G         +  +   G   +   RK 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGL----LSPTEGTILLDGQDLTDDERKS  56

Query  237  FRGEAIYTAETDVHFPQLTVGDTLKFAALARAPRNRLPGVSREQYAVHMRDVVMAMLGLT  296
             R E  Y  +    FP+LTV + L+           L G+S+ +      +  +  LGL 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGL-------LLKGLSKREKDARA-EEALEKLGLG  108

Query  297  HTMNTRVGNDFVRGVSGGERKRVSIAEATLSGSPLQCWDNST  338
               +  VG      +SGG+R+RV+IA A L+   L   D  T
Sbjct  109  DLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149


>CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular N-terminal. 
 This domain is found at the N-terminus of ABC-transporter 
proteins from fungi, plants to higher eukaryotes. It would 
appear to be an extracellular domain.
Length=80

 Score = 90.1 bits (224),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 44/87 (51%), Gaps = 9/87 (10%)

Query  69   LARQLTRQSTRFSTSGNVENPFLETKEDSTLNPLSPNFKAKNWMKNLLALSSRDPERYPK  128
            LAR LTRQS+  S+S +        +EDS        F  + W+KNL  L   D      
Sbjct  2    LARILTRQSSS-SSSSSSPESTDPDEEDS-------EFDLRKWLKNLRRLIDEDG-YIKP  52

Query  129  RVAGVAFKNLSVHGYGSPTDYQKDVFN  155
            R  GVAFKNL+V G G+  DYQ  V N
Sbjct  53   RKLGVAFKNLTVSGVGAGADYQPTVGN  79



Lambda      K        H        a         alpha
   0.321    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1897032876


Query= TCONS_00002454

Length=1497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           178     2e-51
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  124     4e-34
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  104     3e-26
CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular ...  90.1    3e-22


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 178 bits (454),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 8/212 (4%)

Query  1178  CLLRVFSQYWRTPVYIYSKTALCVLTALYIGFSFFNAQNSAQGLQNQMFSIFMLMTIFGN  1237
              L R F + WR P     +    +L AL  G  F N  N   GL       F ++    +
Sbjct  1     LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGLLFFSILFNAFS  60

Query  1238  LVQQIMPNFCTQRSLYEVRERPSKTYSWKAFMAANIIVELPWNTLMAFLIFVCWYYPIGL  1297
              +  I P F  +R +   RE  S  YS  A++ A I+ ELP + L + +  +  Y+ +GL
Sbjct  61    ALSGISPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  1298  YRNAEPTDSVHERGALMFLLIWSFLLFTSTFAHMMIAGIELAETGGNLANLLFSLCLIFC  1357
               +A        R  L  L++    L  S+    + A     E    L  L+    L+  
Sbjct  120   PPSAG-------RFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLS  172

Query  1358  GVLAPPQSLPGFWIFMYRVSPFTYLVSAMLST  1389
             G   P  S+P +W ++Y ++P TY + A+ + 
Sbjct  173   GFFIPIDSMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 155 bits (393),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 67/205 (33%), Positives = 111/205 (54%), Gaps = 2/205 (1%)

Query  509  CMIRGFQRLKGDSSLTMSQLIGNFIMALVIGSVFYNLPDDTSSFYARGALLFFAVLLNAF  568
             + R F R   D SL + +LI   +MAL+ G++F NL +       R  LLFF++L NAF
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGN-QQGGLNRPGLLFFSILFNAF  59

Query  569  SSALEI-LTLYAQRPIVEKQARYAMYHPFAEAIASMLCDMPYKITNAIIFNLTLYFMTNL  627
            S+   I      +R ++ ++    +Y P A  +A +L ++P  +  ++IF L +YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  628  RREPGAFFVFLLFSFVTTLTMSMLFRTMAASSRTLSQALVPAAILILGLVIYTGFTIPTR  687
                G FF+FLL   +T L  S L   ++A + +   A     +++L L++ +GF IP  
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  688  NMLGWSRWMNYIDPIAYGFESLMVN  712
            +M  W +W+ Y++P+ Y  E+L  N
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 124 bits (314),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 0/88 (0%)

Query  727  VPSSGAYDSQPLAYRVCSTVGSVSGSRYVQGDDYLNQSFQYYKSHQWRNLGIMFGFMFFF  786
            VPS   Y++   A +VC+ VG+V G  +V GDDYL  S+ Y  SH WRN GI+  F  FF
Sbjct  1    VPSGPGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFF  60

Query  787  MFTYLTATEYISESKSKGEVLLFRRGHA  814
            +  YL ATEY S +KSKGEVL+F+RG A
Sbjct  61   LALYLIATEYNSAAKSKGEVLVFKRGKA  88


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 104 bits (261),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 56/156 (36%), Positives = 84/156 (54%), Gaps = 10/156 (6%)

Query  872   LDHVDGWVKPGTCTALMGVSGAGKTTLLDVLATRVTMGVVSGEMLVDGRP----RDQSFQ  927
             L +V   + PG   AL+G +GAGK+TLL ++A  ++     G +L+DG+       +S +
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLS--PTEGTILLDGQDLTDDERKSLR  58

Query  928   RKTGYVQQQDLHLHTTTVREALRFSALLRQPAHVPRQEKIDYVEEVIKLLGMESYADAVV  987
             ++ GYV Q        TVRE LR   LL+  +   +  +    EE ++ LG+   AD  V
Sbjct  59    KEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADRPV  115

Query  988   GVPGEGLNVEQRKRLTIGVELAAKPQLLLFLDEPTS  1023
             G     L+  QR+R+ I   L  KP+LLL LDEPT+
Sbjct  116   GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPTA  150


 Score = 103 bits (259),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 14/162 (9%)

Query  178  LRDFDGLVKSGEMLVVLGRPGSGCSTFLKTISGEMNGIYMDEKSYLNYQGIS-SKQMRKQ  236
            L++    +  GE+L ++G  G+G ST LK I+G         +  +   G   +   RK 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGL----LSPTEGTILLDGQDLTDDERKS  56

Query  237  FRGEAIYTAETDVHFPQLTVGDTLKFAALARAPRNRLPGVSREQYAVHMRDVVMAMLGLT  296
             R E  Y  +    FP+LTV + L+           L G+S+ +      +  +  LGL 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGL-------LLKGLSKREKDARA-EEALEKLGLG  108

Query  297  HTMNTRVGNDFVRGVSGGERKRVSIAEATLSGSPLQCWDNST  338
               +  VG      +SGG+R+RV+IA A L+   L   D  T
Sbjct  109  DLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149


>CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular N-terminal. 
 This domain is found at the N-terminus of ABC-transporter 
proteins from fungi, plants to higher eukaryotes. It would 
appear to be an extracellular domain.
Length=80

 Score = 90.1 bits (224),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 44/87 (51%), Gaps = 9/87 (10%)

Query  69   LARQLTRQSTRFSTSGNVENPFLETKEDSTLNPLSPNFKAKNWMKNLLALSSRDPERYPK  128
            LAR LTRQS+  S+S +        +EDS        F  + W+KNL  L   D      
Sbjct  2    LARILTRQSSS-SSSSSSPESTDPDEEDS-------EFDLRKWLKNLRRLIDEDG-YIKP  52

Query  129  RVAGVAFKNLSVHGYGSPTDYQKDVFN  155
            R  GVAFKNL+V G G+  DYQ  V N
Sbjct  53   RKLGVAFKNLTVSGVGAGADYQPTVGN  79



Lambda      K        H        a         alpha
   0.321    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1897032876


Query= TCONS_00002459

Length=1497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           178     2e-51
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  124     4e-34
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  104     3e-26
CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular ...  90.1    3e-22


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 178 bits (454),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 8/212 (4%)

Query  1178  CLLRVFSQYWRTPVYIYSKTALCVLTALYIGFSFFNAQNSAQGLQNQMFSIFMLMTIFGN  1237
              L R F + WR P     +    +L AL  G  F N  N   GL       F ++    +
Sbjct  1     LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGLLFFSILFNAFS  60

Query  1238  LVQQIMPNFCTQRSLYEVRERPSKTYSWKAFMAANIIVELPWNTLMAFLIFVCWYYPIGL  1297
              +  I P F  +R +   RE  S  YS  A++ A I+ ELP + L + +  +  Y+ +GL
Sbjct  61    ALSGISPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  1298  YRNAEPTDSVHERGALMFLLIWSFLLFTSTFAHMMIAGIELAETGGNLANLLFSLCLIFC  1357
               +A        R  L  L++    L  S+    + A     E    L  L+    L+  
Sbjct  120   PPSAG-------RFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLS  172

Query  1358  GVLAPPQSLPGFWIFMYRVSPFTYLVSAMLST  1389
             G   P  S+P +W ++Y ++P TY + A+ + 
Sbjct  173   GFFIPIDSMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 155 bits (393),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 67/205 (33%), Positives = 111/205 (54%), Gaps = 2/205 (1%)

Query  509  CMIRGFQRLKGDSSLTMSQLIGNFIMALVIGSVFYNLPDDTSSFYARGALLFFAVLLNAF  568
             + R F R   D SL + +LI   +MAL+ G++F NL +       R  LLFF++L NAF
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGN-QQGGLNRPGLLFFSILFNAF  59

Query  569  SSALEI-LTLYAQRPIVEKQARYAMYHPFAEAIASMLCDMPYKITNAIIFNLTLYFMTNL  627
            S+   I      +R ++ ++    +Y P A  +A +L ++P  +  ++IF L +YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  628  RREPGAFFVFLLFSFVTTLTMSMLFRTMAASSRTLSQALVPAAILILGLVIYTGFTIPTR  687
                G FF+FLL   +T L  S L   ++A + +   A     +++L L++ +GF IP  
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  688  NMLGWSRWMNYIDPIAYGFESLMVN  712
            +M  W +W+ Y++P+ Y  E+L  N
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 124 bits (314),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 0/88 (0%)

Query  727  VPSSGAYDSQPLAYRVCSTVGSVSGSRYVQGDDYLNQSFQYYKSHQWRNLGIMFGFMFFF  786
            VPS   Y++   A +VC+ VG+V G  +V GDDYL  S+ Y  SH WRN GI+  F  FF
Sbjct  1    VPSGPGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFF  60

Query  787  MFTYLTATEYISESKSKGEVLLFRRGHA  814
            +  YL ATEY S +KSKGEVL+F+RG A
Sbjct  61   LALYLIATEYNSAAKSKGEVLVFKRGKA  88


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 104 bits (261),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 56/156 (36%), Positives = 84/156 (54%), Gaps = 10/156 (6%)

Query  872   LDHVDGWVKPGTCTALMGVSGAGKTTLLDVLATRVTMGVVSGEMLVDGRP----RDQSFQ  927
             L +V   + PG   AL+G +GAGK+TLL ++A  ++     G +L+DG+       +S +
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLS--PTEGTILLDGQDLTDDERKSLR  58

Query  928   RKTGYVQQQDLHLHTTTVREALRFSALLRQPAHVPRQEKIDYVEEVIKLLGMESYADAVV  987
             ++ GYV Q        TVRE LR   LL+  +   +  +    EE ++ LG+   AD  V
Sbjct  59    KEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADRPV  115

Query  988   GVPGEGLNVEQRKRLTIGVELAAKPQLLLFLDEPTS  1023
             G     L+  QR+R+ I   L  KP+LLL LDEPT+
Sbjct  116   GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPTA  150


 Score = 103 bits (259),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 14/162 (9%)

Query  178  LRDFDGLVKSGEMLVVLGRPGSGCSTFLKTISGEMNGIYMDEKSYLNYQGIS-SKQMRKQ  236
            L++    +  GE+L ++G  G+G ST LK I+G         +  +   G   +   RK 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGL----LSPTEGTILLDGQDLTDDERKS  56

Query  237  FRGEAIYTAETDVHFPQLTVGDTLKFAALARAPRNRLPGVSREQYAVHMRDVVMAMLGLT  296
             R E  Y  +    FP+LTV + L+           L G+S+ +      +  +  LGL 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGL-------LLKGLSKREKDARA-EEALEKLGLG  108

Query  297  HTMNTRVGNDFVRGVSGGERKRVSIAEATLSGSPLQCWDNST  338
               +  VG      +SGG+R+RV+IA A L+   L   D  T
Sbjct  109  DLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149


>CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular N-terminal. 
 This domain is found at the N-terminus of ABC-transporter 
proteins from fungi, plants to higher eukaryotes. It would 
appear to be an extracellular domain.
Length=80

 Score = 90.1 bits (224),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 44/87 (51%), Gaps = 9/87 (10%)

Query  69   LARQLTRQSTRFSTSGNVENPFLETKEDSTLNPLSPNFKAKNWMKNLLALSSRDPERYPK  128
            LAR LTRQS+  S+S +        +EDS        F  + W+KNL  L   D      
Sbjct  2    LARILTRQSSS-SSSSSSPESTDPDEEDS-------EFDLRKWLKNLRRLIDEDG-YIKP  52

Query  129  RVAGVAFKNLSVHGYGSPTDYQKDVFN  155
            R  GVAFKNL+V G G+  DYQ  V N
Sbjct  53   RKLGVAFKNLTVSGVGAGADYQPTVGN  79



Lambda      K        H        a         alpha
   0.321    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0740    0.140     1.90     42.6     43.6 

Effective search space used: 1897032876


Query= TCONS_00002458

Length=1497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           178     2e-51
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  124     4e-34
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  104     3e-26
CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular ...  90.1    3e-22


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 178 bits (454),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 8/212 (4%)

Query  1178  CLLRVFSQYWRTPVYIYSKTALCVLTALYIGFSFFNAQNSAQGLQNQMFSIFMLMTIFGN  1237
              L R F + WR P     +    +L AL  G  F N  N   GL       F ++    +
Sbjct  1     LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGLLFFSILFNAFS  60

Query  1238  LVQQIMPNFCTQRSLYEVRERPSKTYSWKAFMAANIIVELPWNTLMAFLIFVCWYYPIGL  1297
              +  I P F  +R +   RE  S  YS  A++ A I+ ELP + L + +  +  Y+ +GL
Sbjct  61    ALSGISPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  1298  YRNAEPTDSVHERGALMFLLIWSFLLFTSTFAHMMIAGIELAETGGNLANLLFSLCLIFC  1357
               +A        R  L  L++    L  S+    + A     E    L  L+    L+  
Sbjct  120   PPSAG-------RFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLS  172

Query  1358  GVLAPPQSLPGFWIFMYRVSPFTYLVSAMLST  1389
             G   P  S+P +W ++Y ++P TY + A+ + 
Sbjct  173   GFFIPIDSMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 155 bits (393),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 67/205 (33%), Positives = 111/205 (54%), Gaps = 2/205 (1%)

Query  509  CMIRGFQRLKGDSSLTMSQLIGNFIMALVIGSVFYNLPDDTSSFYARGALLFFAVLLNAF  568
             + R F R   D SL + +LI   +MAL+ G++F NL +       R  LLFF++L NAF
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGN-QQGGLNRPGLLFFSILFNAF  59

Query  569  SSALEI-LTLYAQRPIVEKQARYAMYHPFAEAIASMLCDMPYKITNAIIFNLTLYFMTNL  627
            S+   I      +R ++ ++    +Y P A  +A +L ++P  +  ++IF L +YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  628  RREPGAFFVFLLFSFVTTLTMSMLFRTMAASSRTLSQALVPAAILILGLVIYTGFTIPTR  687
                G FF+FLL   +T L  S L   ++A + +   A     +++L L++ +GF IP  
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  688  NMLGWSRWMNYIDPIAYGFESLMVN  712
            +M  W +W+ Y++P+ Y  E+L  N
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 124 bits (314),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 0/88 (0%)

Query  727  VPSSGAYDSQPLAYRVCSTVGSVSGSRYVQGDDYLNQSFQYYKSHQWRNLGIMFGFMFFF  786
            VPS   Y++   A +VC+ VG+V G  +V GDDYL  S+ Y  SH WRN GI+  F  FF
Sbjct  1    VPSGPGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFF  60

Query  787  MFTYLTATEYISESKSKGEVLLFRRGHA  814
            +  YL ATEY S +KSKGEVL+F+RG A
Sbjct  61   LALYLIATEYNSAAKSKGEVLVFKRGKA  88


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 104 bits (261),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 56/156 (36%), Positives = 84/156 (54%), Gaps = 10/156 (6%)

Query  872   LDHVDGWVKPGTCTALMGVSGAGKTTLLDVLATRVTMGVVSGEMLVDGRP----RDQSFQ  927
             L +V   + PG   AL+G +GAGK+TLL ++A  ++     G +L+DG+       +S +
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLS--PTEGTILLDGQDLTDDERKSLR  58

Query  928   RKTGYVQQQDLHLHTTTVREALRFSALLRQPAHVPRQEKIDYVEEVIKLLGMESYADAVV  987
             ++ GYV Q        TVRE LR   LL+  +   +  +    EE ++ LG+   AD  V
Sbjct  59    KEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADRPV  115

Query  988   GVPGEGLNVEQRKRLTIGVELAAKPQLLLFLDEPTS  1023
             G     L+  QR+R+ I   L  KP+LLL LDEPT+
Sbjct  116   GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPTA  150


 Score = 103 bits (259),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 14/162 (9%)

Query  178  LRDFDGLVKSGEMLVVLGRPGSGCSTFLKTISGEMNGIYMDEKSYLNYQGIS-SKQMRKQ  236
            L++    +  GE+L ++G  G+G ST LK I+G         +  +   G   +   RK 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGL----LSPTEGTILLDGQDLTDDERKS  56

Query  237  FRGEAIYTAETDVHFPQLTVGDTLKFAALARAPRNRLPGVSREQYAVHMRDVVMAMLGLT  296
             R E  Y  +    FP+LTV + L+           L G+S+ +      +  +  LGL 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGL-------LLKGLSKREKDARA-EEALEKLGLG  108

Query  297  HTMNTRVGNDFVRGVSGGERKRVSIAEATLSGSPLQCWDNST  338
               +  VG      +SGG+R+RV+IA A L+   L   D  T
Sbjct  109  DLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149


>CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular N-terminal. 
 This domain is found at the N-terminus of ABC-transporter 
proteins from fungi, plants to higher eukaryotes. It would 
appear to be an extracellular domain.
Length=80

 Score = 90.1 bits (224),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 44/87 (51%), Gaps = 9/87 (10%)

Query  69   LARQLTRQSTRFSTSGNVENPFLETKEDSTLNPLSPNFKAKNWMKNLLALSSRDPERYPK  128
            LAR LTRQS+  S+S +        +EDS        F  + W+KNL  L   D      
Sbjct  2    LARILTRQSSS-SSSSSSPESTDPDEEDS-------EFDLRKWLKNLRRLIDEDG-YIKP  52

Query  129  RVAGVAFKNLSVHGYGSPTDYQKDVFN  155
            R  GVAFKNL+V G G+  DYQ  V N
Sbjct  53   RKLGVAFKNLTVSGVGAGADYQPTVGN  79



Lambda      K        H        a         alpha
   0.321    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1897032876


Query= TCONS_00007767

Length=719
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           175     2e-51
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  104     1e-26


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 175 bits (446),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 8/212 (4%)

Query  400  CLLRVFSQYWRTPVYIYSKTALCVLTALYIGFSFFNAQNSAQGLQNQMFSIFMLMTIFGN  459
             L R F + WR P     +    +L AL  G  F N  N   GL       F ++    +
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGLLFFSILFNAFS  60

Query  460  LVQQIMPNFCTQRSLYEVRERPSKTYSWKAFMAANIIVELPWNTLMAFLIFVCWYYPIGL  519
             +  I P F  +R +   RE  S  YS  A++ A I+ ELP + L + +  +  Y+ +GL
Sbjct  61   ALSGISPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  520  YRNAEPTDSVHERGALMFLLIWSFLLFTSTFAHMMIAGIELAETGGNLANLLFSLCLIFC  579
              +A        R  L  L++    L  S+    + A     E    L  L+    L+  
Sbjct  120  PPSAG-------RFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLS  172

Query  580  GVLAPPQSLPGFWIFMYRVSPFTYLVSAMLST  611
            G   P  S+P +W ++Y ++P TY + A+ + 
Sbjct  173  GFFIPIDSMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 104 bits (261),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 56/156 (36%), Positives = 84/156 (54%), Gaps = 10/156 (6%)

Query  94   LDHVDGWVKPGTCTALMGVSGAGKTTLLDVLATRVTMGVVSGEMLVDGRP----RDQSFQ  149
            L +V   + PG   AL+G +GAGK+TLL ++A  ++     G +L+DG+       +S +
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLS--PTEGTILLDGQDLTDDERKSLR  58

Query  150  RKTGYVQQQDLHLHTTTVREALRFSALLRQPAHVPRQEKIDYVEEVIKLLGMESYADAVV  209
            ++ GYV Q        TVRE LR   LL+  +   +  +    EE ++ LG+   AD  V
Sbjct  59   KEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADRPV  115

Query  210  GVPGEGLNVEQRKRLTIGVELAAKPQLLLFLDEPTS  245
            G     L+  QR+R+ I   L  KP+LLL LDEPT+
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPTA  150



Lambda      K        H        a         alpha
   0.323    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 909470000


Query= TCONS_00002463

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  88.0    3e-22


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 88.0 bits (219),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 41/79 (52%), Gaps = 5/79 (6%)

Query  3    LGHESSGTVTAVGPDVTTLQVGDRVALEVGLPCRTCTLCRTGRYNICPDMKFRSSAKLFP  62
            LGHE +G V  VGP VT L+VGDRV +E  +PC  C  CR GRYN+CP+ +F        
Sbjct  33   LGHEFAGEVVEVGPGVTGLKVGDRVVVEPLIPCGKCEYCREGRYNLCPNGRFLGY-----  87

Query  63   HLDGTLMELTNHPADLCHK  81
              DG   E    P      
Sbjct  88   DRDGGFAEYVVVPERNLVP  106



Lambda      K        H        a         alpha
   0.318    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00002460

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  88.0    3e-22


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 88.0 bits (219),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 41/79 (52%), Gaps = 5/79 (6%)

Query  3    LGHESSGTVTAVGPDVTTLQVGDRVALEVGLPCRTCTLCRTGRYNICPDMKFRSSAKLFP  62
            LGHE +G V  VGP VT L+VGDRV +E  +PC  C  CR GRYN+CP+ +F        
Sbjct  33   LGHEFAGEVVEVGPGVTGLKVGDRVVVEPLIPCGKCEYCREGRYNLCPNGRFLGY-----  87

Query  63   HLDGTLMELTNHPADLCHK  81
              DG   E    P      
Sbjct  88   DRDGGFAEYVVVPERNLVP  106



Lambda      K        H        a         alpha
   0.318    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00007768

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  79.5    7e-17


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 79.5 bits (196),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 96/286 (34%), Gaps = 68/286 (24%)

Query  228  RYAENFHPYLPLVPRKYFNRNALDDF----ATNEKHLLTAVLTIAS-------------K  270
             + +NFHP  P++ R  F R+  + F          LL A+L + +              
Sbjct  3    LFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSSL  62

Query  271  DLVERPEIHEYCSK---YMHELISGIAAGADCDVEAVEALLLLAEWEPQGLRPRIERVGR  327
                   IH +         +  S         +  ++ALLLL  +E        +R   
Sbjct  63   TDEAADGIHFFLRALILIHEDFSSP-----SSSLWILQALLLLELYE----LGTGDR---  110

Query  328  GEEDRAAWMHVGLALRSGYFLGLDRTSFR---GDASGDTETEARRRLAWTCCYISDRLIS  384
                +  W + GLA+R    LGL R              E E RRRL W  C+  DRLIS
Sbjct  111  ----KLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFW-ACFYLDRLIS  165

Query  385  VRIGR------------------AFWSRGPGPMTGLVSQDFPSLQPVKSDEEDYAKIFQA  426
            + +GR                    W                   P+ S E    K    
Sbjct  166  LILGRPPLLSDSDIDLPLPCDDDDLWE---------SDSADEVTLPLISLESKSIKPPLF  216

Query  427  TLDLTQLYNNVHDVLYSGMRTSNQMMLMGDYVKYVDDFRLAILRWK  472
             + L+++ + +   L S   T +Q  L    + +V +   A+  W+
Sbjct  217  LIKLSKILSKILGSLLSIRSTLDQRDL-QLKLSWVRELERALDNWR  261



Lambda      K        H        a         alpha
   0.318    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 937117888


Query= TCONS_00002462

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  88.0    3e-22


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 88.0 bits (219),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 41/79 (52%), Gaps = 5/79 (6%)

Query  3    LGHESSGTVTAVGPDVTTLQVGDRVALEVGLPCRTCTLCRTGRYNICPDMKFRSSAKLFP  62
            LGHE +G V  VGP VT L+VGDRV +E  +PC  C  CR GRYN+CP+ +F        
Sbjct  33   LGHEFAGEVVEVGPGVTGLKVGDRVVVEPLIPCGKCEYCREGRYNLCPNGRFLGY-----  87

Query  63   HLDGTLMELTNHPADLCHK  81
              DG   E    P      
Sbjct  88   DRDGGFAEYVVVPERNLVP  106



Lambda      K        H        a         alpha
   0.318    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00002461

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  88.0    3e-22


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 88.0 bits (219),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 41/79 (52%), Gaps = 5/79 (6%)

Query  3    LGHESSGTVTAVGPDVTTLQVGDRVALEVGLPCRTCTLCRTGRYNICPDMKFRSSAKLFP  62
            LGHE +G V  VGP VT L+VGDRV +E  +PC  C  CR GRYN+CP+ +F        
Sbjct  33   LGHEFAGEVVEVGPGVTGLKVGDRVVVEPLIPCGKCEYCREGRYNLCPNGRFLGY-----  87

Query  63   HLDGTLMELTNHPADLCHK  81
              DG   E    P      
Sbjct  88   DRDGGFAEYVVVPERNLVP  106



Lambda      K        H        a         alpha
   0.318    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00007769

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  88.0    3e-22


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 88.0 bits (219),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 41/79 (52%), Gaps = 5/79 (6%)

Query  3    LGHESSGTVTAVGPDVTTLQVGDRVALEVGLPCRTCTLCRTGRYNICPDMKFRSSAKLFP  62
            LGHE +G V  VGP VT L+VGDRV +E  +PC  C  CR GRYN+CP+ +F        
Sbjct  33   LGHEFAGEVVEVGPGVTGLKVGDRVVVEPLIPCGKCEYCREGRYNLCPNGRFLGY-----  87

Query  63   HLDGTLMELTNHPADLCHK  81
              DG   E    P      
Sbjct  88   DRDGGFAEYVVVPERNLVP  106



Lambda      K        H        a         alpha
   0.318    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00007770

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  88.0    3e-22


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 88.0 bits (219),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 41/79 (52%), Gaps = 5/79 (6%)

Query  3    LGHESSGTVTAVGPDVTTLQVGDRVALEVGLPCRTCTLCRTGRYNICPDMKFRSSAKLFP  62
            LGHE +G V  VGP VT L+VGDRV +E  +PC  C  CR GRYN+CP+ +F        
Sbjct  33   LGHEFAGEVVEVGPGVTGLKVGDRVVVEPLIPCGKCEYCREGRYNLCPNGRFLGY-----  87

Query  63   HLDGTLMELTNHPADLCHK  81
              DG   E    P      
Sbjct  88   DRDGGFAEYVVVPERNLVP  106



Lambda      K        H        a         alpha
   0.318    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00002464

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  88.0    3e-22


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 88.0 bits (219),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 41/79 (52%), Gaps = 5/79 (6%)

Query  3    LGHESSGTVTAVGPDVTTLQVGDRVALEVGLPCRTCTLCRTGRYNICPDMKFRSSAKLFP  62
            LGHE +G V  VGP VT L+VGDRV +E  +PC  C  CR GRYN+CP+ +F        
Sbjct  33   LGHEFAGEVVEVGPGVTGLKVGDRVVVEPLIPCGKCEYCREGRYNLCPNGRFLGY-----  87

Query  63   HLDGTLMELTNHPADLCHK  81
              DG   E    P      
Sbjct  88   DRDGGFAEYVVVPERNLVP  106



Lambda      K        H        a         alpha
   0.318    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00007771

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  178     7e-58
CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  128     2e-36


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 178 bits (455),  Expect = 7e-58, Method: Composition-based stats.
 Identities = 77/175 (44%), Positives = 110/175 (63%), Gaps = 4/175 (2%)

Query  1    MIGALRQAYIPLSALRAGQWQGK-TTLGHDPQGKVLGILGMGGIGREMANRARAFGMKIQ  59
            ++   R+       +RAG+W      LG +  GK +GI+G+G IGR +A R +AFGMK+ 
Sbjct  4    LLALARRIPEADRQVRAGRWASPDALLGRELSGKTVGIIGLGRIGRAVAKRLKAFGMKVI  63

Query  60   YHNRSRLSPELEGD--AQYVSFDELLANADVLSLNLALNAKTRHIIGEKEFQKMKDGVVI  117
             ++R     E E +  A+YVS DELLA +DV+SL+L L  +TRH+I  +    MK G ++
Sbjct  64   AYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGAIL  123

Query  118  VNTARGALIDEKALVAALDSGKVMSAGLDVYENEPEIEPG-LVNNPRVMLLPHIG  171
            +NTARG L+DE AL+AAL SG++  A LDV+E EP      L++ P V+L PHI 
Sbjct  124  INTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPADHPLLDLPNVILTPHIA  178


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 128 bits (323),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 5/207 (2%)

Query  1    MIGALRQAYIPLSALRAGQWQGKTTLGHDPQGKVLGILGMGGIGREMANRARAFGMKI-Q  59
            ++   R+     +++R G+W+    +G +  GK LG++G GGIG  +A  A+AFGM +  
Sbjct  104  ILALARRIPEADASVREGKWKKSGLIGLELYGKTLGVIGGGGIGGGVAAIAKAFGMGVVA  163

Query  60   YHNRSRLSPELEGDAQYVSFDELL----ANADVLSLNLALNAKTRHIIGEKEFQKMKDGV  115
            Y           G  + +S   LL     + DVL++N     KT  II  +    +KD V
Sbjct  164  YDPYPNPERAEAGGVEVLSLLLLLLDLPESDDVLTVNPLTTMKTGVIIINEARGMLKDAV  223

Query  116  VIVNTARGALIDEKALVAALDSGKVMSAGLDVYENEPEIEPGLVNNPRVMLLPHIGTATY  175
             I+N A G +IDE AL A L+ G   +A LDV E  P ++  L++ P V+L PHIG AT 
Sbjct  224  AIINAAGGGVIDEAALDALLEEGIAAAADLDVEEEPPPVDSPLLDLPNVILTPHIGGATE  283

Query  176  ETQKEMELLVLNNLRSAVEKGEMITLV  202
            E Q+ +      N+ + ++ G     V
Sbjct  284  EAQERIAEEAAENILAFLDGGPPANAV  310



Lambda      K        H        a         alpha
   0.316    0.135    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00002471

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  138     4e-43
CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  67.3    7e-15


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 138 bits (349),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 47/96 (49%), Positives = 67/96 (70%), Gaps = 2/96 (2%)

Query  2    ANRARAFGMKIQYHNRSRLSPELEGD--AQYVSFDELLANADVLSLNLALNAKTRHIIGE  59
            A R +AFGMK+  ++R     E E +  A+YVS DELLA +DV+SL+L L  +TRH+I  
Sbjct  52   AKRLKAFGMKVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTPETRHLINA  111

Query  60   KEFQKMKDGVVIVNTARGALIDEKALVAALDSGKVS  95
            +    MK G +++NTARG L+DE AL+AAL SG+++
Sbjct  112  ERLALMKPGAILINTARGGLVDEDALIAALKSGRIA  147


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 67.3 bits (165),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 35/111 (32%), Positives = 47/111 (42%), Gaps = 11/111 (10%)

Query  4    RARAFGMKI-QYHNRSRLSPELEGDAQYVSFDELL----ANADVLSLNLALNAKTRHIIG  58
             A+AFGM +  Y           G  + +S   LL     + DVL++N     KT  II 
Sbjct  153  IAKAFGMGVVAYDPYPNPERAEAGGVEVLSLLLLLLDLPESDDVLTVNPLTTMKTGVIII  212

Query  59   EKEFQKMKDGVVIVNTARGALIDEKALVAALDSGKVSSILAYFLELWVVTE  109
             +    +KD V I+N A G +IDE AL A L+ G              V E
Sbjct  213  NEARGMLKDAVAIINAAGGGVIDEAALDALLEEG------IAAAADLDVEE  257



Lambda      K        H        a         alpha
   0.322    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00007772

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  150     1e-45
CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  138     1e-39


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 150 bits (382),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 64/147 (44%), Positives = 95/147 (65%), Gaps = 3/147 (2%)

Query  118  IFLMIGALRQAYIPLSALRAGQWQGK-TTLGHDPQGKVLGILGMGGIGREMANRARAFGM  176
            + L++   R+       +RAG+W      LG +  GK +GI+G+G IGR +A R +AFGM
Sbjct  1    LALLLALARRIPEADRQVRAGRWASPDALLGRELSGKTVGIIGLGRIGRAVAKRLKAFGM  60

Query  177  KIQYHNRSRLSPELEGD--AQYVSFDELLANADVLSLNLALNAKTRHIIGEKEFQKMKDG  234
            K+  ++R     E E +  A+YVS DELLA +DV+SL+L L  +TRH+I  +    MK G
Sbjct  61   KVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPG  120

Query  235  VVIVNTARGALIDEKALVAALDSGKVS  261
             +++NTARG L+DE AL+AAL SG+++
Sbjct  121  AILINTARGGLVDEDALIAALKSGRIA  147


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 138 bits (351),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 77/248 (31%), Positives = 116/248 (47%), Gaps = 22/248 (9%)

Query  33   TRDEFIRNCKDGQYDDVVVIYRSNASTKFTGPFDAELLSVLPKSLKYICHNGAGYDNIDI  92
              +E +   KD   D   +I RS           AE+L   PK LK I   G G DN+D+
Sbjct  27   LTEELLEKAKD--AD--ALIVRSRT------KVTAEVLEAAPK-LKVIGRAGVGVDNVDL  75

Query  93   PACSEKGAIIYSTPVAVNHATADVGIFLMIGALRQAYIPLSALRAGQWQGKTTLGHDPQG  152
             A +E+G ++ + P     + A++ I L++   R+     +++R G+W+    +G +  G
Sbjct  76   DAATERGILVTNAPGYNTESVAELTIGLILALARRIPEADASVREGKWKKSGLIGLELYG  135

Query  153  KVLGILGMGGIGREMANRARAFGMKI-QYHNRSRLSPELEGDAQYVSFDELL----ANAD  207
            K LG++G GGIG  +A  A+AFGM +  Y           G  + +S   LL     + D
Sbjct  136  KTLGVIGGGGIGGGVAAIAKAFGMGVVAYDPYPNPERAEAGGVEVLSLLLLLLDLPESDD  195

Query  208  VLSLNLALNAKTRHIIGEKEFQKMKDGVVIVNTARGALIDEKALVAALDSGKVSSILAYF  267
            VL++N     KT  II  +    +KD V I+N A G +IDE AL A L+ G         
Sbjct  196  VLTVNPLTTMKTGVIIINEARGMLKDAVAIINAAGGGVIDEAALDALLEEG------IAA  249

Query  268  LELWVVTE  275
                 V E
Sbjct  250  AADLDVEE  257



Lambda      K        H        a         alpha
   0.321    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00002465

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  150     9e-46
CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  147     7e-43


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 150 bits (382),  Expect = 9e-46, Method: Composition-based stats.
 Identities = 64/147 (44%), Positives = 95/147 (65%), Gaps = 3/147 (2%)

Query  118  IFLMIGALRQAYIPLSALRAGQWQGK-TTLGHDPQGKVLGILGMGGIGREMANRARAFGM  176
            + L++   R+       +RAG+W      LG +  GK +GI+G+G IGR +A R +AFGM
Sbjct  1    LALLLALARRIPEADRQVRAGRWASPDALLGRELSGKTVGIIGLGRIGRAVAKRLKAFGM  60

Query  177  KIQYHNRSRLSPELEGD--AQYVSFDELLANADVLSLNLALNAKTRHIIGEKEFQKMKDG  234
            K+  ++R     E E +  A+YVS DELLA +DV+SL+L L  +TRH+I  +    MK G
Sbjct  61   KVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPG  120

Query  235  VVIVNTARGALIDEKALVAALDSGKVS  261
             +++NTARG L+DE AL+AAL SG+++
Sbjct  121  AILINTARGGLVDEDALIAALKSGRIA  147


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 147 bits (373),  Expect = 7e-43, Method: Composition-based stats.
 Identities = 79/248 (32%), Positives = 117/248 (47%), Gaps = 22/248 (9%)

Query  33   TRDEFIRNCKDGQYDDVVVIYRSNASTKFTGPFDAELLSVLPKSLKYICHNGAGYDNIDI  92
              +E +   KD   D   +I RS           AE+L   PK LK I   G G DN+D+
Sbjct  27   LTEELLEKAKD--AD--ALIVRSRT------KVTAEVLEAAPK-LKVIGRAGVGVDNVDL  75

Query  93   PACSEKGIAVSSTPVAVNHATADVGIFLMIGALRQAYIPLSALRAGQWQGKTTLGHDPQG  152
             A +E+GI V++ P     + A++ I L++   R+     +++R G+W+    +G +  G
Sbjct  76   DAATERGILVTNAPGYNTESVAELTIGLILALARRIPEADASVREGKWKKSGLIGLELYG  135

Query  153  KVLGILGMGGIGREMANRARAFGMKI-QYHNRSRLSPELEGDAQYVSFDELL----ANAD  207
            K LG++G GGIG  +A  A+AFGM +  Y           G  + +S   LL     + D
Sbjct  136  KTLGVIGGGGIGGGVAAIAKAFGMGVVAYDPYPNPERAEAGGVEVLSLLLLLLDLPESDD  195

Query  208  VLSLNLALNAKTRHIIGEKEFQKMKDGVVIVNTARGALIDEKALVAALDSGKVSSILAYF  267
            VL++N     KT  II  +    +KD V I+N A G +IDE AL A L+ G         
Sbjct  196  VLTVNPLTTMKTGVIIINEARGMLKDAVAIINAAGGGVIDEAALDALLEEG------IAA  249

Query  268  LELWVVTE  275
                 V E
Sbjct  250  AADLDVEE  257



Lambda      K        H        a         alpha
   0.320    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00007773

Length=116
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  156     1e-50
CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  75.4    5e-18


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 156 bits (397),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 54/107 (50%), Positives = 74/107 (69%), Gaps = 2/107 (2%)

Query  2    ANRARAFGMKIQYHNRSRLSPELEGD--AQYVSFDELLANADVLSLNLALNAKTRHIIGE  59
            A R +AFGMK+  ++R     E E +  A+YVS DELLA +DV+SL+L L  +TRH+I  
Sbjct  52   AKRLKAFGMKVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTPETRHLINA  111

Query  60   KEFQKMKDGVVIVNTARGALIDEKALVAALDSGKVMSAGLDVYENEP  106
            +    MK G +++NTARG L+DE AL+AAL SG++  A LDV+E EP
Sbjct  112  ERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEP  158


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 75.4 bits (186),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 41/118 (35%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query  4    RARAFGMKI-QYHNRSRLSPELEGDAQYVSFDELL----ANADVLSLNLALNAKTRHIIG  58
             A+AFGM +  Y           G  + +S   LL     + DVL++N     KT  II 
Sbjct  153  IAKAFGMGVVAYDPYPNPERAEAGGVEVLSLLLLLLDLPESDDVLTVNPLTTMKTGVIII  212

Query  59   EKEFQKMKDGVVIVNTARGALIDEKALVAALDSGKVMSAGLDVYENEPEIEPGLVNNP  116
             +    +KD V I+N A G +IDE AL A L+ G   +A LDV E  P ++  L++ P
Sbjct  213  NEARGMLKDAVAIINAAGGGVIDEAALDALLEEGIAAAADLDVEEEPPPVDSPLLDLP  270



Lambda      K        H        a         alpha
   0.315    0.132    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00007774

Length=138
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  78.5    7e-19


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 78.5 bits (194),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 30/97 (31%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query  33   TRDEFIRNCKDGQYDDVVVIYRSNASTKFTGPFDAELLSVLPKSLKYICHNGAGYDNIDI  92
              +E +   KD   D   +I RS           AE+L   PK LK I   G G DN+D+
Sbjct  27   LTEELLEKAKD--AD--ALIVRSRT------KVTAEVLEAAPK-LKVIGRAGVGVDNVDL  75

Query  93   PACSEKGIAVSSTPVAVNHATADVGIFLMIGALRQAY  129
             A +E+GI V++ P     + A++ I L++   R+  
Sbjct  76   DAATERGILVTNAPGYNTESVAELTIGLILALARRIP  112



Lambda      K        H        a         alpha
   0.320    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00002466

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  138     4e-43
CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  67.3    7e-15


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 138 bits (349),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 47/96 (49%), Positives = 67/96 (70%), Gaps = 2/96 (2%)

Query  2    ANRARAFGMKIQYHNRSRLSPELEGD--AQYVSFDELLANADVLSLNLALNAKTRHIIGE  59
            A R +AFGMK+  ++R     E E +  A+YVS DELLA +DV+SL+L L  +TRH+I  
Sbjct  52   AKRLKAFGMKVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTPETRHLINA  111

Query  60   KEFQKMKDGVVIVNTARGALIDEKALVAALDSGKVS  95
            +    MK G +++NTARG L+DE AL+AAL SG+++
Sbjct  112  ERLALMKPGAILINTARGGLVDEDALIAALKSGRIA  147


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 67.3 bits (165),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 35/111 (32%), Positives = 47/111 (42%), Gaps = 11/111 (10%)

Query  4    RARAFGMKI-QYHNRSRLSPELEGDAQYVSFDELL----ANADVLSLNLALNAKTRHIIG  58
             A+AFGM +  Y           G  + +S   LL     + DVL++N     KT  II 
Sbjct  153  IAKAFGMGVVAYDPYPNPERAEAGGVEVLSLLLLLLDLPESDDVLTVNPLTTMKTGVIII  212

Query  59   EKEFQKMKDGVVIVNTARGALIDEKALVAALDSGKVSSILAYFLELWVVTE  109
             +    +KD V I+N A G +IDE AL A L+ G              V E
Sbjct  213  NEARGMLKDAVAIINAAGGGVIDEAALDALLEEG------IAAAADLDVEE  257



Lambda      K        H        a         alpha
   0.322    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00002468

Length=169
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  169     8e-55
CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  113     1e-31


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 169 bits (430),  Expect = 8e-55, Method: Composition-based stats.
 Identities = 61/127 (48%), Positives = 84/127 (66%), Gaps = 3/127 (2%)

Query  2    ANRARAFGMKIQYHNRSRLSPELEGD--AQYVSFDELLANADVLSLNLALNAKTRHIIGE  59
            A R +AFGMK+  ++R     E E +  A+YVS DELLA +DV+SL+L L  +TRH+I  
Sbjct  52   AKRLKAFGMKVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTPETRHLINA  111

Query  60   KEFQKMKDGVVIVNTARGALIDEKALVAALDSGKVMSAGLDVYENEPEIEPG-LVNNPRV  118
            +    MK G +++NTARG L+DE AL+AAL SG++  A LDV+E EP      L++ P V
Sbjct  112  ERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPADHPLLDLPNV  171

Query  119  MLLPHIG  125
            +L PHI 
Sbjct  172  ILTPHIA  178


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 113 bits (286),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 78/158 (49%), Gaps = 5/158 (3%)

Query  4    RARAFGMKI-QYHNRSRLSPELEGDAQYVSFDELL----ANADVLSLNLALNAKTRHIIG  58
             A+AFGM +  Y           G  + +S   LL     + DVL++N     KT  II 
Sbjct  153  IAKAFGMGVVAYDPYPNPERAEAGGVEVLSLLLLLLDLPESDDVLTVNPLTTMKTGVIII  212

Query  59   EKEFQKMKDGVVIVNTARGALIDEKALVAALDSGKVMSAGLDVYENEPEIEPGLVNNPRV  118
             +    +KD V I+N A G +IDE AL A L+ G   +A LDV E  P ++  L++ P V
Sbjct  213  NEARGMLKDAVAIINAAGGGVIDEAALDALLEEGIAAAADLDVEEEPPPVDSPLLDLPNV  272

Query  119  MLLPHIGTATYETQKEMELLVLNNLRSAVEKGEMITLV  156
            +L PHIG AT E Q+ +      N+ + ++ G     V
Sbjct  273  ILTPHIGGATEEAQERIAEEAAENILAFLDGGPPANAV  310



Lambda      K        H        a         alpha
   0.315    0.133    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00002467

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  138     4e-43
CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  67.3    7e-15


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 138 bits (349),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 47/96 (49%), Positives = 67/96 (70%), Gaps = 2/96 (2%)

Query  2    ANRARAFGMKIQYHNRSRLSPELEGD--AQYVSFDELLANADVLSLNLALNAKTRHIIGE  59
            A R +AFGMK+  ++R     E E +  A+YVS DELLA +DV+SL+L L  +TRH+I  
Sbjct  52   AKRLKAFGMKVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTPETRHLINA  111

Query  60   KEFQKMKDGVVIVNTARGALIDEKALVAALDSGKVS  95
            +    MK G +++NTARG L+DE AL+AAL SG+++
Sbjct  112  ERLALMKPGAILINTARGGLVDEDALIAALKSGRIA  147


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 67.3 bits (165),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 35/111 (32%), Positives = 47/111 (42%), Gaps = 11/111 (10%)

Query  4    RARAFGMKI-QYHNRSRLSPELEGDAQYVSFDELL----ANADVLSLNLALNAKTRHIIG  58
             A+AFGM +  Y           G  + +S   LL     + DVL++N     KT  II 
Sbjct  153  IAKAFGMGVVAYDPYPNPERAEAGGVEVLSLLLLLLDLPESDDVLTVNPLTTMKTGVIII  212

Query  59   EKEFQKMKDGVVIVNTARGALIDEKALVAALDSGKVSSILAYFLELWVVTE  109
             +    +KD V I+N A G +IDE AL A L+ G              V E
Sbjct  213  NEARGMLKDAVAIINAAGGGVIDEAALDALLEEG------IAAAADLDVEE  257



Lambda      K        H        a         alpha
   0.322    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00002469

Length=182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  90.0    1e-22


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 90.0 bits (224),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 36/121 (30%), Positives = 59/121 (49%), Gaps = 11/121 (9%)

Query  33   TRDEFIRNCKDGQYDDVVVIYRSNASTKFTGPFDAELLSVLPKSLKYICHNGAGYDNIDI  92
              +E +   KD   D   +I RS           AE+L   PK LK I   G G DN+D+
Sbjct  27   LTEELLEKAKD--AD--ALIVRSRT------KVTAEVLEAAPK-LKVIGRAGVGVDNVDL  75

Query  93   PACSEKGIAVSSTPVAVNHATADVGIFLMIGALRQAYIPLSALRAGQWQGKTTLGHDPQG  152
             A +E+GI V++ P     + A++ I L++   R+     +++R G+W+    +G +  G
Sbjct  76   DAATERGILVTNAPGYNTESVAELTIGLILALARRIPEADASVREGKWKKSGLIGLELYG  135

Query  153  K  153
            K
Sbjct  136  K  136



Lambda      K        H        a         alpha
   0.320    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00007775

Length=138
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  149     1e-47
CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  76.6    4e-18


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 149 bits (380),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 2/104 (2%)

Query  1    MGGIGREMANRARAFGMKIQYHNRSRLSPELEGD--AQYVSFDELLANADVLSLNLALNA  58
            +G IGR +A R +AFGMK+  ++R     E E +  A+YVS DELLA +DV+SL+L L  
Sbjct  44   LGRIGRAVAKRLKAFGMKVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTP  103

Query  59   KTRHIIGEKEFQKMKDGVVIVNTARGALIDEKALVAALDSGKVS  102
            +TRH+I  +    MK G +++NTARG L+DE AL+AAL SG+++
Sbjct  104  ETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIA  147


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 76.6 bits (189),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 53/121 (44%), Gaps = 11/121 (9%)

Query  1    MGGIGREMANRARAFGMKI-QYHNRSRLSPELEGDAQYVSFDELL----ANADVLSLNLA  55
             GGIG  +A  A+AFGM +  Y           G  + +S   LL     + DVL++N  
Sbjct  143  GGGIGGGVAAIAKAFGMGVVAYDPYPNPERAEAGGVEVLSLLLLLLDLPESDDVLTVNPL  202

Query  56   LNAKTRHIIGEKEFQKMKDGVVIVNTARGALIDEKALVAALDSGKVSSILAYFLELWVVT  115
               KT  II  +    +KD V I+N A G +IDE AL A L+ G              V 
Sbjct  203  TTMKTGVIIINEARGMLKDAVAIINAAGGGVIDEAALDALLEEG------IAAAADLDVE  256

Query  116  E  116
            E
Sbjct  257  E  257



Lambda      K        H        a         alpha
   0.322    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00002470

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460818 pfam03127, GAT, GAT domain. The GAT domain is responsi...  78.7    2e-19


>CDD:460818 pfam03127, GAT, GAT domain.  The GAT domain is responsible for 
binding of GGA proteins to several members of the ARF family 
including ARF1 and ARF3. The GAT domain stabilizes membrane 
bound ARF1 in its GTP bound state, by interfering with GAP 
proteins.
Length=76

 Score = 78.7 bits (195),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (3%)

Query  220  KTSAKLLLQFVQSTPPTEFNGNELIKEFCTRCQTASRAIQNYIHSTNPAPDENTLQTLIE  279
            + +AKLL + + ST P E   NELIKE   RC++A   IQ  I  T  + +++ L  L++
Sbjct  1    RNNAKLLNEMLSSTDPDEELDNELIKELYERCKSAQPKIQKLIEET--SDEDDLLAELLQ  58

Query  280  TNDELSVALSK  290
             ND+L+  L +
Sbjct  59   LNDDLNNVLER  69



Lambda      K        H        a         alpha
   0.312    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00002472

Length=335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  194     1e-60
CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  183     9e-58


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 194 bits (496),  Expect = 1e-60, Method: Composition-based stats.
 Identities = 98/295 (33%), Positives = 148/295 (50%), Gaps = 16/295 (5%)

Query  33   TRDEFIRNCKDGQYDDVVVIYRSNASTKFTGPFDAELLSVLPKSLKYICHNGAGYDNIDI  92
              +E +   KD   D   +I RS           AE+L   PK LK I   G G DN+D+
Sbjct  27   LTEELLEKAKD--AD--ALIVRSRT------KVTAEVLEAAPK-LKVIGRAGVGVDNVDL  75

Query  93   PACSEKGIAVSSTPVAVNHATADVGIFLMIGALRQAYIPLSALRAGQWQGKTTLGHDPQG  152
             A +E+GI V++ P     + A++ I L++   R+     +++R G+W+    +G +  G
Sbjct  76   DAATERGILVTNAPGYNTESVAELTIGLILALARRIPEADASVREGKWKKSGLIGLELYG  135

Query  153  KVLGILGMGGIGREMANRARAFGMKI-QYHNRSRLSPELEGDAQYVSFDELL----ANAD  207
            K LG++G GGIG  +A  A+AFGM +  Y           G  + +S   LL     + D
Sbjct  136  KTLGVIGGGGIGGGVAAIAKAFGMGVVAYDPYPNPERAEAGGVEVLSLLLLLLDLPESDD  195

Query  208  VLSLNLALNAKTRHIIGEKEFQKMKDGVVIVNTARGALIDEKALVAALDSGKVMSAGLDV  267
            VL++N     KT  II  +    +KD V I+N A G +IDE AL A L+ G   +A LDV
Sbjct  196  VLTVNPLTTMKTGVIIINEARGMLKDAVAIINAAGGGVIDEAALDALLEEGIAAAADLDV  255

Query  268  YENEPEIEPGLVNNPRVMLLPHIGTATYETQKEMELLVLNNLRSAVEKGEMITLV  322
             E  P ++  L++ P V+L PHIG AT E Q+ +      N+ + ++ G     V
Sbjct  256  EEEPPPVDSPLLDLPNVILTPHIGGATEEAQERIAEEAAENILAFLDGGPPANAV  310


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 183 bits (466),  Expect = 9e-58, Method: Composition-based stats.
 Identities = 78/178 (44%), Positives = 112/178 (63%), Gaps = 4/178 (2%)

Query  118  IFLMIGALRQAYIPLSALRAGQWQGK-TTLGHDPQGKVLGILGMGGIGREMANRARAFGM  176
            + L++   R+       +RAG+W      LG +  GK +GI+G+G IGR +A R +AFGM
Sbjct  1    LALLLALARRIPEADRQVRAGRWASPDALLGRELSGKTVGIIGLGRIGRAVAKRLKAFGM  60

Query  177  KIQYHNRSRLSPELEGD--AQYVSFDELLANADVLSLNLALNAKTRHIIGEKEFQKMKDG  234
            K+  ++R     E E +  A+YVS DELLA +DV+SL+L L  +TRH+I  +    MK G
Sbjct  61   KVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPG  120

Query  235  VVIVNTARGALIDEKALVAALDSGKVMSAGLDVYENEPEIEPG-LVNNPRVMLLPHIG  291
             +++NTARG L+DE AL+AAL SG++  A LDV+E EP      L++ P V+L PHI 
Sbjct  121  AILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPADHPLLDLPNVILTPHIA  178



Lambda      K        H        a         alpha
   0.317    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00002473

Length=169
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  180     4e-59
CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  121     1e-34


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 180 bits (459),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 65/135 (48%), Positives = 90/135 (67%), Gaps = 3/135 (2%)

Query  1    MGGIGREMANRARAFGMKIQYHNRSRLSPELEGD--AQYVSFDELLANADVLSLNLALNA  58
            +G IGR +A R +AFGMK+  ++R     E E +  A+YVS DELLA +DV+SL+L L  
Sbjct  44   LGRIGRAVAKRLKAFGMKVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTP  103

Query  59   KTRHIIGEKEFQKMKDGVVIVNTARGALIDEKALVAALDSGKVMSAGLDVYENEPEIEPG  118
            +TRH+I  +    MK G +++NTARG L+DE AL+AAL SG++  A LDV+E EP     
Sbjct  104  ETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPADH  163

Query  119  -LVNNPRVMLLPHIG  132
             L++ P V+L PHI 
Sbjct  164  PLLDLPNVILTPHIA  178


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 121 bits (306),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 59/168 (35%), Positives = 84/168 (50%), Gaps = 5/168 (3%)

Query  1    MGGIGREMANRARAFGMKI-QYHNRSRLSPELEGDAQYVSFDELL----ANADVLSLNLA  55
             GGIG  +A  A+AFGM +  Y           G  + +S   LL     + DVL++N  
Sbjct  143  GGGIGGGVAAIAKAFGMGVVAYDPYPNPERAEAGGVEVLSLLLLLLDLPESDDVLTVNPL  202

Query  56   LNAKTRHIIGEKEFQKMKDGVVIVNTARGALIDEKALVAALDSGKVMSAGLDVYENEPEI  115
               KT  II  +    +KD V I+N A G +IDE AL A L+ G   +A LDV E  P +
Sbjct  203  TTMKTGVIIINEARGMLKDAVAIINAAGGGVIDEAALDALLEEGIAAAADLDVEEEPPPV  262

Query  116  EPGLVNNPRVMLLPHIGTATYETQKEMELLVLNNLRSAVEKGEMITLV  163
            +  L++ P V+L PHIG AT E Q+ +      N+ + ++ G     V
Sbjct  263  DSPLLDLPNVILTPHIGGATEEAQERIAEEAAENILAFLDGGPPANAV  310



Lambda      K        H        a         alpha
   0.315    0.133    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00007776

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.516    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00002475

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460818 pfam03127, GAT, GAT domain. The GAT domain is responsi...  87.2    6e-22


>CDD:460818 pfam03127, GAT, GAT domain.  The GAT domain is responsible for 
binding of GGA proteins to several members of the ARF family 
including ARF1 and ARF3. The GAT domain stabilizes membrane 
bound ARF1 in its GTP bound state, by interfering with GAP 
proteins.
Length=76

 Score = 87.2 bits (217),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 44/75 (59%), Gaps = 2/75 (3%)

Query  220  KTSAKLLLQFVQSTPPTEFNGNELIKEFCTRCQTASRAIQNYIHSTNPAPDENTLQTLIE  279
            + +AKLL + + ST P E   NELIKE   RC++A   IQ  I  T  + +++ L  L++
Sbjct  1    RNNAKLLNEMLSSTDPDEELDNELIKELYERCKSAQPKIQKLIEET--SDEDDLLAELLQ  58

Query  280  TNDELSVALSKYQHA  294
             ND+L+  L +Y+  
Sbjct  59   LNDDLNNVLERYERL  73



Lambda      K        H        a         alpha
   0.309    0.123    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00007777

Length=277


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0727    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00002474

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460818 pfam03127, GAT, GAT domain. The GAT domain is responsi...  87.2    6e-22


>CDD:460818 pfam03127, GAT, GAT domain.  The GAT domain is responsible for 
binding of GGA proteins to several members of the ARF family 
including ARF1 and ARF3. The GAT domain stabilizes membrane 
bound ARF1 in its GTP bound state, by interfering with GAP 
proteins.
Length=76

 Score = 87.2 bits (217),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 44/75 (59%), Gaps = 2/75 (3%)

Query  220  KTSAKLLLQFVQSTPPTEFNGNELIKEFCTRCQTASRAIQNYIHSTNPAPDENTLQTLIE  279
            + +AKLL + + ST P E   NELIKE   RC++A   IQ  I  T  + +++ L  L++
Sbjct  1    RNNAKLLNEMLSSTDPDEELDNELIKELYERCKSAQPKIQKLIEET--SDEDDLLAELLQ  58

Query  280  TNDELSVALSKYQHA  294
             ND+L+  L +Y+  
Sbjct  59   LNDDLNNVLERYERL  73



Lambda      K        H        a         alpha
   0.309    0.123    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00002476

Length=187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e....  125     1e-38


>CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e.  This 
family includes L22 from prokaryotes and chloroplasts and L17 
from eukaryotes.
Length=104

 Score = 125 bits (318),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 42/136 (31%), Positives = 57/136 (42%), Gaps = 33/136 (24%)

Query  17   ARGSYLRVSFKNTRETAQAINGMKLQRALAFLENVKNKTEVVPFRRYAGSIGRTAQGKQW  76
            A+   LR+S K  R  A  I GM +  ALA L+    K                      
Sbjct  1    AKARNLRISPKKARLVADLIRGMSVDEALAILKFSPKK----------------------  38

Query  77   GVSKARWPVKSAQFLLDLLKNAEANADTKGL-DTGNLIVKHIQVNQAPKGRRRTYRAHGR  135
                      +A+ +L LLK+A ANA+ KG  D  NL +  IQV++ P  +R   RA GR
Sbjct  39   ----------AAKIVLKLLKSAIANAENKGNLDVDNLYISEIQVDKGPTLKRIRPRARGR  88

Query  136  INPYMTNPCHIELILT  151
              P      HI ++L 
Sbjct  89   AGPIRKRTSHITVVLK  104



Lambda      K        H        a         alpha
   0.317    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00002477

Length=187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e....  125     1e-38


>CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e.  This 
family includes L22 from prokaryotes and chloroplasts and L17 
from eukaryotes.
Length=104

 Score = 125 bits (318),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 42/136 (31%), Positives = 57/136 (42%), Gaps = 33/136 (24%)

Query  17   ARGSYLRVSFKNTRETAQAINGMKLQRALAFLENVKNKTEVVPFRRYAGSIGRTAQGKQW  76
            A+   LR+S K  R  A  I GM +  ALA L+    K                      
Sbjct  1    AKARNLRISPKKARLVADLIRGMSVDEALAILKFSPKK----------------------  38

Query  77   GVSKARWPVKSAQFLLDLLKNAEANADTKGL-DTGNLIVKHIQVNQAPKGRRRTYRAHGR  135
                      +A+ +L LLK+A ANA+ KG  D  NL +  IQV++ P  +R   RA GR
Sbjct  39   ----------AAKIVLKLLKSAIANAENKGNLDVDNLYISEIQVDKGPTLKRIRPRARGR  88

Query  136  INPYMTNPCHIELILT  151
              P      HI ++L 
Sbjct  89   AGPIRKRTSHITVVLK  104



Lambda      K        H        a         alpha
   0.317    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00007778

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e....  103     3e-30


>CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e.  This 
family includes L22 from prokaryotes and chloroplasts and L17 
from eukaryotes.
Length=104

 Score = 103 bits (259),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 51/121 (42%), Gaps = 33/121 (27%)

Query  17   ARGSYLRVSFKNTRETAQAINGMKLQRALAFLENVKNKTEVVPFRRYAGSIGRTAQGKQW  76
            A+   LR+S K  R  A  I GM +  ALA L+    K                      
Sbjct  1    AKARNLRISPKKARLVADLIRGMSVDEALAILKFSPKK----------------------  38

Query  77   GVSKARWPVKSAQFLLDLLKNAEANADTKGL-DTGNLIVKHIQVNQAPKGRRRTYRAHGR  135
                      +A+ +L LLK+A ANA+ KG  D  NL +  IQV++ P  +R   RA GR
Sbjct  39   ----------AAKIVLKLLKSAIANAENKGNLDVDNLYISEIQVDKGPTLKRIRPRARGR  88

Query  136  V  136
             
Sbjct  89   A  89



Lambda      K        H        a         alpha
   0.319    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00002478

Length=187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e....  125     1e-38


>CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e.  This 
family includes L22 from prokaryotes and chloroplasts and L17 
from eukaryotes.
Length=104

 Score = 125 bits (318),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 42/136 (31%), Positives = 57/136 (42%), Gaps = 33/136 (24%)

Query  17   ARGSYLRVSFKNTRETAQAINGMKLQRALAFLENVKNKTEVVPFRRYAGSIGRTAQGKQW  76
            A+   LR+S K  R  A  I GM +  ALA L+    K                      
Sbjct  1    AKARNLRISPKKARLVADLIRGMSVDEALAILKFSPKK----------------------  38

Query  77   GVSKARWPVKSAQFLLDLLKNAEANADTKGL-DTGNLIVKHIQVNQAPKGRRRTYRAHGR  135
                      +A+ +L LLK+A ANA+ KG  D  NL +  IQV++ P  +R   RA GR
Sbjct  39   ----------AAKIVLKLLKSAIANAENKGNLDVDNLYISEIQVDKGPTLKRIRPRARGR  88

Query  136  INPYMTNPCHIELILT  151
              P      HI ++L 
Sbjct  89   AGPIRKRTSHITVVLK  104



Lambda      K        H        a         alpha
   0.317    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00002479

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460818 pfam03127, GAT, GAT domain. The GAT domain is responsi...  87.6    5e-22


>CDD:460818 pfam03127, GAT, GAT domain.  The GAT domain is responsible for 
binding of GGA proteins to several members of the ARF family 
including ARF1 and ARF3. The GAT domain stabilizes membrane 
bound ARF1 in its GTP bound state, by interfering with GAP 
proteins.
Length=76

 Score = 87.6 bits (218),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 44/75 (59%), Gaps = 2/75 (3%)

Query  241  KTSAKLLLQFVQSTPPTEFNGNELIKEFCTRCQTASRAIQNYIHSTNPAPDENTLQTLIE  300
            + +AKLL + + ST P E   NELIKE   RC++A   IQ  I  T  + +++ L  L++
Sbjct  1    RNNAKLLNEMLSSTDPDEELDNELIKELYERCKSAQPKIQKLIEET--SDEDDLLAELLQ  58

Query  301  TNDELSVALSKYQHA  315
             ND+L+  L +Y+  
Sbjct  59   LNDDLNNVLERYERL  73



Lambda      K        H        a         alpha
   0.310    0.123    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00002480

Length=104
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e....  60.1    7e-14


>CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e.  This 
family includes L22 from prokaryotes and chloroplasts and L17 
from eukaryotes.
Length=104

 Score = 60.1 bits (147),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 37/89 (42%), Gaps = 23/89 (26%)

Query  17   ARGSYLRVSFKNTRETAQAINGMKLQRALAFLENVKNKTEVVPFRRYAGSIGRTAQGKQW  76
            A+   LR+S K  R  A  I GM +  ALA L+           ++ A  + +       
Sbjct  1    AKARNLRISPKKARLVADLIRGMSVDEALAILKFSP--------KKAAKIVLKL------  46

Query  77   GVSKARWPVKNAEANADTKGL-DTGNLIV  104
                    +K+A ANA+ KG  D  NL +
Sbjct  47   --------LKSAIANAENKGNLDVDNLYI  67



Lambda      K        H        a         alpha
   0.316    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00002481

Length=194
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e....  127     7e-39


>CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e.  This 
family includes L22 from prokaryotes and chloroplasts and L17 
from eukaryotes.
Length=104

 Score = 127 bits (321),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 42/136 (31%), Positives = 57/136 (42%), Gaps = 33/136 (24%)

Query  24   ARGSYLRVSFKNTRETAQAINGMKLQRALAFLENVKNKTEVVPFRRYAGSIGRTAQGKQW  83
            A+   LR+S K  R  A  I GM +  ALA L+    K                      
Sbjct  1    AKARNLRISPKKARLVADLIRGMSVDEALAILKFSPKK----------------------  38

Query  84   GVSKARWPVKSAQFLLDLLKNAEANADTKGL-DTGNLIVKHIQVNQAPKGRRRTYRAHGR  142
                      +A+ +L LLK+A ANA+ KG  D  NL +  IQV++ P  +R   RA GR
Sbjct  39   ----------AAKIVLKLLKSAIANAENKGNLDVDNLYISEIQVDKGPTLKRIRPRARGR  88

Query  143  INPYMTNPCHIELILT  158
              P      HI ++L 
Sbjct  89   AGPIRKRTSHITVVLK  104



Lambda      K        H        a         alpha
   0.318    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00002482

Length=808
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403800 pfam12708, Pectate_lyase_3, Pectate lyase superfamily ...  187     2e-55


>CDD:403800 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein. 
 This family of proteins possesses a beta helical structure 
like Pectate lyase. This family is most closely related to 
glycosyl hydrolase family 28.
Length=213

 Score = 187 bits (478),  Expect = 2e-55, Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 100/141 (71%), Gaps = 4/141 (3%)

Query  1    MAVIDADPYENDGSNWYTNQNNFFRAIRNLVIDLRAMPMNSGAGIHWQVGQATSLQNIRF  60
              +ID DPY   G     N NNF+R IRNLVID+  +      GIHWQV QATSLQN+ F
Sbjct  77   AGLIDGDPYTGGG-PGIINTNNFYRQIRNLVIDITGVAP-GATGIHWQVAQATSLQNVVF  134

Query  61   EMIRGGGDANKQQGIFMDNGSGGFMSDLTFNGGNYGMFVGNQQFTTRNLSFNDCNTAVFM  120
            EM  G G  NK QGIFM+NGSGGF++DL FNGG+ G+ VGNQQFTTRN++F++C T + +
Sbjct  135  EMSFGSG--NKHQGIFMENGSGGFLNDLVFNGGDIGIAVGNQQFTTRNITFHNCGTGIDV  192

Query  121  NWNWAWTFKSISINNCQVGLN  141
             W W WT+ + +INNC VG++
Sbjct  193  LWGWGWTYSNNNINNCGVGID  213


 Score = 63.9 bits (156),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 26/61 (43%), Positives = 37/61 (61%), Gaps = 3/61 (5%)

Query  442  FVSVKSAGAKGDGQTDDTAAIQKVLN---SVTEDQIVYFDHGAYIITDTIKVPKNIKITG  498
            F +VK  GAKGDG TDDTAAIQK ++   + T   +VYF  G Y+++  I +     + G
Sbjct  1    FRNVKDYGAKGDGVTDDTAAIQKAIDDGGATTTPAVVYFPPGTYLVSSPIILYSGTVLVG  60

Query  499  E  499
            +
Sbjct  61   D  61



Lambda      K        H        a         alpha
   0.313    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1038978528


Query= TCONS_00007779

Length=790
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403800 pfam12708, Pectate_lyase_3, Pectate lyase superfamily ...  188     1e-55


>CDD:403800 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein. 
 This family of proteins possesses a beta helical structure 
like Pectate lyase. This family is most closely related to 
glycosyl hydrolase family 28.
Length=213

 Score = 188 bits (479),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 100/141 (71%), Gaps = 4/141 (3%)

Query  1    MAVIDADPYENDGSNWYTNQNNFFRAIRNLVIDLRAMPMNSGAGIHWQVGQATSLQNIRF  60
              +ID DPY   G     N NNF+R IRNLVID+  +      GIHWQV QATSLQN+ F
Sbjct  77   AGLIDGDPYTGGG-PGIINTNNFYRQIRNLVIDITGVAP-GATGIHWQVAQATSLQNVVF  134

Query  61   EMIRGGGDANKQQGIFMDNGSGGFMSDLTFNGGNYGMFVGNQQFTTRNLSFNDCNTAVFM  120
            EM  G G  NK QGIFM+NGSGGF++DL FNGG+ G+ VGNQQFTTRN++F++C T + +
Sbjct  135  EMSFGSG--NKHQGIFMENGSGGFLNDLVFNGGDIGIAVGNQQFTTRNITFHNCGTGIDV  192

Query  121  NWNWAWTFKSISINNCQVGLN  141
             W W WT+ + +INNC VG++
Sbjct  193  LWGWGWTYSNNNINNCGVGID  213


 Score = 63.9 bits (156),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 26/61 (43%), Positives = 37/61 (61%), Gaps = 3/61 (5%)

Query  424  FVSVKSAGAKGDGQTDDTAAIQKVLN---SVTEDQIVYFDHGAYIITDTIKVPKNIKITG  480
            F +VK  GAKGDG TDDTAAIQK ++   + T   +VYF  G Y+++  I +     + G
Sbjct  1    FRNVKDYGAKGDGVTDDTAAIQKAIDDGGATTTPAVVYFPPGTYLVSSPIILYSGTVLVG  60

Query  481  E  481
            +
Sbjct  61   D  61



Lambda      K        H        a         alpha
   0.313    0.127    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1012785792


Query= TCONS_00007780

Length=792
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403800 pfam12708, Pectate_lyase_3, Pectate lyase superfamily ...  187     2e-55


>CDD:403800 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein. 
 This family of proteins possesses a beta helical structure 
like Pectate lyase. This family is most closely related to 
glycosyl hydrolase family 28.
Length=213

 Score = 187 bits (478),  Expect = 2e-55, Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 100/141 (71%), Gaps = 4/141 (3%)

Query  1    MAVIDADPYENDGSNWYTNQNNFFRAIRNLVIDLRAMPMNSGAGIHWQVGQATSLQNIRF  60
              +ID DPY   G     N NNF+R IRNLVID+  +      GIHWQV QATSLQN+ F
Sbjct  77   AGLIDGDPYTGGG-PGIINTNNFYRQIRNLVIDITGVAP-GATGIHWQVAQATSLQNVVF  134

Query  61   EMIRGGGDANKQQGIFMDNGSGGFMSDLTFNGGNYGMFVGNQQFTTRNLSFNDCNTAVFM  120
            EM  G G  NK QGIFM+NGSGGF++DL FNGG+ G+ VGNQQFTTRN++F++C T + +
Sbjct  135  EMSFGSG--NKHQGIFMENGSGGFLNDLVFNGGDIGIAVGNQQFTTRNITFHNCGTGIDV  192

Query  121  NWNWAWTFKSISINNCQVGLN  141
             W W WT+ + +INNC VG++
Sbjct  193  LWGWGWTYSNNNINNCGVGID  213


 Score = 63.9 bits (156),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 26/61 (43%), Positives = 37/61 (61%), Gaps = 3/61 (5%)

Query  442  FVSVKSAGAKGDGQTDDTAAIQKVLN---SVTEDQIVYFDHGAYIITDTIKVPKNIKITG  498
            F +VK  GAKGDG TDDTAAIQK ++   + T   +VYF  G Y+++  I +     + G
Sbjct  1    FRNVKDYGAKGDGVTDDTAAIQKAIDDGGATTTPAVVYFPPGTYLVSSPIILYSGTVLVG  60

Query  499  E  499
            +
Sbjct  61   D  61



Lambda      K        H        a         alpha
   0.313    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1015696096


Query= TCONS_00002483

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00002484

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00007781

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00002485

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00002487

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00007782

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00002490

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00002488

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00002489

Length=1087
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               94.0    1e-23
CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies)            63.8    2e-13
CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein. T...  67.0    3e-12


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 94.0 bits (234),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 58/85 (68%), Gaps = 2/85 (2%)

Query  229  LHIAAAHGREDIVQLLLKHGADIEARSDGGWTPLHNACDKGAVEIVRLLLQAGAKINAQL  288
            LH+AA +G  ++V+LLL++GAD   +   G T LH A   G +EIV+LLL+  A +N + 
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLK-  58

Query  289  LNGVTPLHLAAQAGHREVVECLLER  313
             NG T LH AA++GH E+V+ LLE+
Sbjct  59   DNGRTALHYAARSGHLEIVKLLLEK  83


 Score = 89.0 bits (221),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 42/96 (44%), Positives = 58/96 (60%), Gaps = 6/96 (6%)

Query  192  LHWACATGKLRVAELLLTRRRGPIADVNAVELRNKTSLHIAAAHGREDIVQLLLKHGADI  251
            LH A   G L + +LLL       AD N  +   +T+LH+AA +G  +IV+LLL+H AD+
Sbjct  1    LHLAAKNGNLELVKLLLENG----ADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADV  55

Query  252  EARSDGGWTPLHNACDKGAVEIVRLLLQAGAKINAQ  287
              + D G T LH A   G +EIV+LLL+ GA IN +
Sbjct  56   NLK-DNGRTALHYAARSGHLEIVKLLLEKGADINVK  90


 Score = 81.7 bits (202),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 37/83 (45%), Positives = 48/83 (58%), Gaps = 3/83 (4%)

Query  262  LHNACDKGAVEIVRLLLQAGAKINAQLLNGVTPLHLAAQAGHREVVECLLERPDLKRRVR  321
            LH A   G +E+V+LLL+ GA  N Q  NG T LHLAA+ GH E+V+ LLE  D+     
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVN---L  57

Query  322  DNFGSTPFLRAAQFKRKDIVLLL  344
             + G T    AA+    +IV LL
Sbjct  58   KDNGRTALHYAARSGHLEIVKLL  80


 Score = 75.2 bits (185),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 9/89 (10%)

Query  166  DVIELLLGTGCALDGADGRDELGRTPLHWACATGKLRVAELLLTRRRGPIADVNAVELRN  225
            ++++LLL  G     A+ +D+ GRT LH A   G L + +LLL       ADVN  +   
Sbjct  11   ELVKLLLENGA---DANLQDKNGRTALHLAAKNGHLEIVKLLLEH-----ADVNLKD-NG  61

Query  226  KTSLHIAAAHGREDIVQLLLKHGADIEAR  254
            +T+LH AA  G  +IV+LLL+ GADI  +
Sbjct  62   RTALHYAARSGHLEIVKLLLEKGADINVK  90


 Score = 69.4 bits (170),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (54%), Gaps = 3/93 (3%)

Query  54   LMRSCERGSIAATQYLLSLGAKTEVPS-NRVAPLLRAVEHNHVRIVQLLLDYGASTETAD  112
            L  + + G++   + LL  GA   +   N    L  A ++ H+ IV+LLL++       +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKDN  60

Query  113  KKGRTSLMTAAWRNHWHVLQVLISRGADVNAKD  145
              GRT+L  AA   H  ++++L+ +GAD+N KD
Sbjct  61   --GRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 60.1 bits (146),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 46/135 (34%)

Query  86   LLRAVEHNHVRIVQLLLDYGASTETADKKGRTSLMTAAWRNHWHVLQVLISRGADVNAKD  145
            L  A ++ ++ +V+LLL+ GA     DK GRT+L  AA   H  ++++L+   ADVN KD
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  146  LRKRNVLHNLAADKQCDWGEDVIELLLGTGCALDGADGRDELGRTPLHWACATGKLRVAE  205
                                                      GRT LH+A  +G L + +
Sbjct  60   -----------------------------------------NGRTALHYAARSGHLEIVK  78

Query  206  LLLTRRRGPIADVNA  220
            LLL +     AD+N 
Sbjct  79   LLLEKG----ADINV  89


>CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies).  
Length=54

 Score = 63.8 bits (156),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 0/52 (0%)

Query  227  TSLHIAAAHGREDIVQLLLKHGADIEARSDGGWTPLHNACDKGAVEIVRLLL  278
            T+LH AAA G  ++++LLL+ GADI A    G T LH A   G VE+++LLL
Sbjct  3    TALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54


 Score = 60.8 bits (148),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 34/54 (63%), Gaps = 0/54 (0%)

Query  258  GWTPLHNACDKGAVEIVRLLLQAGAKINAQLLNGVTPLHLAAQAGHREVVECLL  311
              T LH A   G +E++RLLL+ GA INA   NG T LH AA  G+ EV++ LL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54


>CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein.  The CorA 
transport system is the primary Mg2+ influx system of Salmonella 
typhimurium and Escherichia coli. CorA is virtually ubiquitous 
in the Bacteria and Archaea. There are also eukaryotic 
relatives of this protein. The family includes the MRS2 
protein from yeast that is thought to be an RNA splicing protein. 
However its membership of this family suggests that its 
effect on splicing is due to altered magnesium levels in 
the cell.
Length=292

 Score = 67.0 bits (164),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 32/193 (17%)

Query  831   FVDNLLDIGQETDLLAEA------KDIRDELNMIRTVLQHQQHILDDFQEVICEIYHGQH  884
             F++ L  +  E D L +        ++  EL  +R  L + +  L   ++V+  +     
Sbjct  123   FLELLEKLEDELDELEDELEDETNNELLRELAALRRSLVYLRRSLLPQRDVLNRLL----  178

Query  885   RSQYEVKKRFKEQQRTIDMHLKDIERMDKQAERIYSSITDLLDLKQKHANAFEARFARDQ  944
               + +      EQ+  +   L  +ER+ +  + +   +  L D        + +  +   
Sbjct  179   -RREDDPLLDDEQKEYLRDLLDRLERLLEDLDALRERLRSLQDE-------YSSLLSE--  228

Query  945   AADTTRQGKTIMVFTIVTIIFLPLSFITSIFTINLTEFPKGPDGVGELHLSYVAKYTFGI  1004
                  R  + + V T+VT IFLPL+ IT I+ +N    P       EL  SY   +   +
Sbjct  229   -----RTNRVMKVLTVVTAIFLPLTLITGIYGMNFGGLP-------ELEWSYGYPFVLIL  276

Query  1005  GFAISIPLILLAL  1017
             G  I + ++LL  
Sbjct  277   GLMILLAILLLFY  289



Lambda      K        H        a         alpha
   0.320    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1382275620


Query= TCONS_00007783

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00007784

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00007785

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.143    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00007786

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.144    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00007787

Length=1087
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               94.0    1e-23
CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies)            63.8    2e-13
CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein. T...  67.0    3e-12


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 94.0 bits (234),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 58/85 (68%), Gaps = 2/85 (2%)

Query  229  LHIAAAHGREDIVQLLLKHGADIEARSDGGWTPLHNACDKGAVEIVRLLLQAGAKINAQL  288
            LH+AA +G  ++V+LLL++GAD   +   G T LH A   G +EIV+LLL+  A +N + 
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLK-  58

Query  289  LNGVTPLHLAAQAGHREVVECLLER  313
             NG T LH AA++GH E+V+ LLE+
Sbjct  59   DNGRTALHYAARSGHLEIVKLLLEK  83


 Score = 89.0 bits (221),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 42/96 (44%), Positives = 58/96 (60%), Gaps = 6/96 (6%)

Query  192  LHWACATGKLRVAELLLTRRRGPIADVNAVELRNKTSLHIAAAHGREDIVQLLLKHGADI  251
            LH A   G L + +LLL       AD N  +   +T+LH+AA +G  +IV+LLL+H AD+
Sbjct  1    LHLAAKNGNLELVKLLLENG----ADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADV  55

Query  252  EARSDGGWTPLHNACDKGAVEIVRLLLQAGAKINAQ  287
              + D G T LH A   G +EIV+LLL+ GA IN +
Sbjct  56   NLK-DNGRTALHYAARSGHLEIVKLLLEKGADINVK  90


 Score = 81.7 bits (202),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 37/83 (45%), Positives = 48/83 (58%), Gaps = 3/83 (4%)

Query  262  LHNACDKGAVEIVRLLLQAGAKINAQLLNGVTPLHLAAQAGHREVVECLLERPDLKRRVR  321
            LH A   G +E+V+LLL+ GA  N Q  NG T LHLAA+ GH E+V+ LLE  D+     
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVN---L  57

Query  322  DNFGSTPFLRAAQFKRKDIVLLL  344
             + G T    AA+    +IV LL
Sbjct  58   KDNGRTALHYAARSGHLEIVKLL  80


 Score = 75.2 bits (185),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 9/89 (10%)

Query  166  DVIELLLGTGCALDGADGRDELGRTPLHWACATGKLRVAELLLTRRRGPIADVNAVELRN  225
            ++++LLL  G     A+ +D+ GRT LH A   G L + +LLL       ADVN  +   
Sbjct  11   ELVKLLLENGA---DANLQDKNGRTALHLAAKNGHLEIVKLLLEH-----ADVNLKD-NG  61

Query  226  KTSLHIAAAHGREDIVQLLLKHGADIEAR  254
            +T+LH AA  G  +IV+LLL+ GADI  +
Sbjct  62   RTALHYAARSGHLEIVKLLLEKGADINVK  90


 Score = 69.4 bits (170),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (54%), Gaps = 3/93 (3%)

Query  54   LMRSCERGSIAATQYLLSLGAKTEVPS-NRVAPLLRAVEHNHVRIVQLLLDYGASTETAD  112
            L  + + G++   + LL  GA   +   N    L  A ++ H+ IV+LLL++       +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKDN  60

Query  113  KKGRTSLMTAAWRNHWHVLQVLISRGADVNAKD  145
              GRT+L  AA   H  ++++L+ +GAD+N KD
Sbjct  61   --GRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 60.1 bits (146),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 46/135 (34%)

Query  86   LLRAVEHNHVRIVQLLLDYGASTETADKKGRTSLMTAAWRNHWHVLQVLISRGADVNAKD  145
            L  A ++ ++ +V+LLL+ GA     DK GRT+L  AA   H  ++++L+   ADVN KD
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  146  LRKRNVLHNLAADKQCDWGEDVIELLLGTGCALDGADGRDELGRTPLHWACATGKLRVAE  205
                                                      GRT LH+A  +G L + +
Sbjct  60   -----------------------------------------NGRTALHYAARSGHLEIVK  78

Query  206  LLLTRRRGPIADVNA  220
            LLL +     AD+N 
Sbjct  79   LLLEKG----ADINV  89


>CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies).  
Length=54

 Score = 63.8 bits (156),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 0/52 (0%)

Query  227  TSLHIAAAHGREDIVQLLLKHGADIEARSDGGWTPLHNACDKGAVEIVRLLL  278
            T+LH AAA G  ++++LLL+ GADI A    G T LH A   G VE+++LLL
Sbjct  3    TALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54


 Score = 60.8 bits (148),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 34/54 (63%), Gaps = 0/54 (0%)

Query  258  GWTPLHNACDKGAVEIVRLLLQAGAKINAQLLNGVTPLHLAAQAGHREVVECLL  311
              T LH A   G +E++RLLL+ GA INA   NG T LH AA  G+ EV++ LL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54


>CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein.  The CorA 
transport system is the primary Mg2+ influx system of Salmonella 
typhimurium and Escherichia coli. CorA is virtually ubiquitous 
in the Bacteria and Archaea. There are also eukaryotic 
relatives of this protein. The family includes the MRS2 
protein from yeast that is thought to be an RNA splicing protein. 
However its membership of this family suggests that its 
effect on splicing is due to altered magnesium levels in 
the cell.
Length=292

 Score = 67.0 bits (164),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 32/193 (17%)

Query  831   FVDNLLDIGQETDLLAEA------KDIRDELNMIRTVLQHQQHILDDFQEVICEIYHGQH  884
             F++ L  +  E D L +        ++  EL  +R  L + +  L   ++V+  +     
Sbjct  123   FLELLEKLEDELDELEDELEDETNNELLRELAALRRSLVYLRRSLLPQRDVLNRLL----  178

Query  885   RSQYEVKKRFKEQQRTIDMHLKDIERMDKQAERIYSSITDLLDLKQKHANAFEARFARDQ  944
               + +      EQ+  +   L  +ER+ +  + +   +  L D        + +  +   
Sbjct  179   -RREDDPLLDDEQKEYLRDLLDRLERLLEDLDALRERLRSLQDE-------YSSLLSE--  228

Query  945   AADTTRQGKTIMVFTIVTIIFLPLSFITSIFTINLTEFPKGPDGVGELHLSYVAKYTFGI  1004
                  R  + + V T+VT IFLPL+ IT I+ +N    P       EL  SY   +   +
Sbjct  229   -----RTNRVMKVLTVVTAIFLPLTLITGIYGMNFGGLP-------ELEWSYGYPFVLIL  276

Query  1005  GFAISIPLILLAL  1017
             G  I + ++LL  
Sbjct  277   GLMILLAILLLFY  289



Lambda      K        H        a         alpha
   0.320    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1382275620


Query= TCONS_00002491

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00002492

Length=1087
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               94.0    1e-23
CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies)            63.8    2e-13
CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein. T...  67.0    3e-12


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 94.0 bits (234),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 58/85 (68%), Gaps = 2/85 (2%)

Query  229  LHIAAAHGREDIVQLLLKHGADIEARSDGGWTPLHNACDKGAVEIVRLLLQAGAKINAQL  288
            LH+AA +G  ++V+LLL++GAD   +   G T LH A   G +EIV+LLL+  A +N + 
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLK-  58

Query  289  LNGVTPLHLAAQAGHREVVECLLER  313
             NG T LH AA++GH E+V+ LLE+
Sbjct  59   DNGRTALHYAARSGHLEIVKLLLEK  83


 Score = 89.0 bits (221),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 42/96 (44%), Positives = 58/96 (60%), Gaps = 6/96 (6%)

Query  192  LHWACATGKLRVAELLLTRRRGPIADVNAVELRNKTSLHIAAAHGREDIVQLLLKHGADI  251
            LH A   G L + +LLL       AD N  +   +T+LH+AA +G  +IV+LLL+H AD+
Sbjct  1    LHLAAKNGNLELVKLLLENG----ADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADV  55

Query  252  EARSDGGWTPLHNACDKGAVEIVRLLLQAGAKINAQ  287
              + D G T LH A   G +EIV+LLL+ GA IN +
Sbjct  56   NLK-DNGRTALHYAARSGHLEIVKLLLEKGADINVK  90


 Score = 81.7 bits (202),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 37/83 (45%), Positives = 48/83 (58%), Gaps = 3/83 (4%)

Query  262  LHNACDKGAVEIVRLLLQAGAKINAQLLNGVTPLHLAAQAGHREVVECLLERPDLKRRVR  321
            LH A   G +E+V+LLL+ GA  N Q  NG T LHLAA+ GH E+V+ LLE  D+     
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVN---L  57

Query  322  DNFGSTPFLRAAQFKRKDIVLLL  344
             + G T    AA+    +IV LL
Sbjct  58   KDNGRTALHYAARSGHLEIVKLL  80


 Score = 75.2 bits (185),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 9/89 (10%)

Query  166  DVIELLLGTGCALDGADGRDELGRTPLHWACATGKLRVAELLLTRRRGPIADVNAVELRN  225
            ++++LLL  G     A+ +D+ GRT LH A   G L + +LLL       ADVN  +   
Sbjct  11   ELVKLLLENGA---DANLQDKNGRTALHLAAKNGHLEIVKLLLEH-----ADVNLKD-NG  61

Query  226  KTSLHIAAAHGREDIVQLLLKHGADIEAR  254
            +T+LH AA  G  +IV+LLL+ GADI  +
Sbjct  62   RTALHYAARSGHLEIVKLLLEKGADINVK  90


 Score = 69.4 bits (170),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (54%), Gaps = 3/93 (3%)

Query  54   LMRSCERGSIAATQYLLSLGAKTEVPS-NRVAPLLRAVEHNHVRIVQLLLDYGASTETAD  112
            L  + + G++   + LL  GA   +   N    L  A ++ H+ IV+LLL++       +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKDN  60

Query  113  KKGRTSLMTAAWRNHWHVLQVLISRGADVNAKD  145
              GRT+L  AA   H  ++++L+ +GAD+N KD
Sbjct  61   --GRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 60.1 bits (146),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 46/135 (34%)

Query  86   LLRAVEHNHVRIVQLLLDYGASTETADKKGRTSLMTAAWRNHWHVLQVLISRGADVNAKD  145
            L  A ++ ++ +V+LLL+ GA     DK GRT+L  AA   H  ++++L+   ADVN KD
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  146  LRKRNVLHNLAADKQCDWGEDVIELLLGTGCALDGADGRDELGRTPLHWACATGKLRVAE  205
                                                      GRT LH+A  +G L + +
Sbjct  60   -----------------------------------------NGRTALHYAARSGHLEIVK  78

Query  206  LLLTRRRGPIADVNA  220
            LLL +     AD+N 
Sbjct  79   LLLEKG----ADINV  89


>CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies).  
Length=54

 Score = 63.8 bits (156),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 0/52 (0%)

Query  227  TSLHIAAAHGREDIVQLLLKHGADIEARSDGGWTPLHNACDKGAVEIVRLLL  278
            T+LH AAA G  ++++LLL+ GADI A    G T LH A   G VE+++LLL
Sbjct  3    TALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54


 Score = 60.8 bits (148),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 34/54 (63%), Gaps = 0/54 (0%)

Query  258  GWTPLHNACDKGAVEIVRLLLQAGAKINAQLLNGVTPLHLAAQAGHREVVECLL  311
              T LH A   G +E++RLLL+ GA INA   NG T LH AA  G+ EV++ LL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54


>CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein.  The CorA 
transport system is the primary Mg2+ influx system of Salmonella 
typhimurium and Escherichia coli. CorA is virtually ubiquitous 
in the Bacteria and Archaea. There are also eukaryotic 
relatives of this protein. The family includes the MRS2 
protein from yeast that is thought to be an RNA splicing protein. 
However its membership of this family suggests that its 
effect on splicing is due to altered magnesium levels in 
the cell.
Length=292

 Score = 67.0 bits (164),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 32/193 (17%)

Query  831   FVDNLLDIGQETDLLAEA------KDIRDELNMIRTVLQHQQHILDDFQEVICEIYHGQH  884
             F++ L  +  E D L +        ++  EL  +R  L + +  L   ++V+  +     
Sbjct  123   FLELLEKLEDELDELEDELEDETNNELLRELAALRRSLVYLRRSLLPQRDVLNRLL----  178

Query  885   RSQYEVKKRFKEQQRTIDMHLKDIERMDKQAERIYSSITDLLDLKQKHANAFEARFARDQ  944
               + +      EQ+  +   L  +ER+ +  + +   +  L D        + +  +   
Sbjct  179   -RREDDPLLDDEQKEYLRDLLDRLERLLEDLDALRERLRSLQDE-------YSSLLSE--  228

Query  945   AADTTRQGKTIMVFTIVTIIFLPLSFITSIFTINLTEFPKGPDGVGELHLSYVAKYTFGI  1004
                  R  + + V T+VT IFLPL+ IT I+ +N    P       EL  SY   +   +
Sbjct  229   -----RTNRVMKVLTVVTAIFLPLTLITGIYGMNFGGLP-------ELEWSYGYPFVLIL  276

Query  1005  GFAISIPLILLAL  1017
             G  I + ++LL  
Sbjct  277   GLMILLAILLLFY  289



Lambda      K        H        a         alpha
   0.320    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1382275620


Query= TCONS_00002493

Length=646


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 815558870


Query= TCONS_00002494

Length=951


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1210573980


Query= TCONS_00002495

Length=1087
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               94.0    1e-23
CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies)            63.8    2e-13
CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein. T...  67.0    3e-12


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 94.0 bits (234),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 58/85 (68%), Gaps = 2/85 (2%)

Query  229  LHIAAAHGREDIVQLLLKHGADIEARSDGGWTPLHNACDKGAVEIVRLLLQAGAKINAQL  288
            LH+AA +G  ++V+LLL++GAD   +   G T LH A   G +EIV+LLL+  A +N + 
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLK-  58

Query  289  LNGVTPLHLAAQAGHREVVECLLER  313
             NG T LH AA++GH E+V+ LLE+
Sbjct  59   DNGRTALHYAARSGHLEIVKLLLEK  83


 Score = 89.0 bits (221),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 42/96 (44%), Positives = 58/96 (60%), Gaps = 6/96 (6%)

Query  192  LHWACATGKLRVAELLLTRRRGPIADVNAVELRNKTSLHIAAAHGREDIVQLLLKHGADI  251
            LH A   G L + +LLL       AD N  +   +T+LH+AA +G  +IV+LLL+H AD+
Sbjct  1    LHLAAKNGNLELVKLLLENG----ADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADV  55

Query  252  EARSDGGWTPLHNACDKGAVEIVRLLLQAGAKINAQ  287
              + D G T LH A   G +EIV+LLL+ GA IN +
Sbjct  56   NLK-DNGRTALHYAARSGHLEIVKLLLEKGADINVK  90


 Score = 81.7 bits (202),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 37/83 (45%), Positives = 48/83 (58%), Gaps = 3/83 (4%)

Query  262  LHNACDKGAVEIVRLLLQAGAKINAQLLNGVTPLHLAAQAGHREVVECLLERPDLKRRVR  321
            LH A   G +E+V+LLL+ GA  N Q  NG T LHLAA+ GH E+V+ LLE  D+     
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVN---L  57

Query  322  DNFGSTPFLRAAQFKRKDIVLLL  344
             + G T    AA+    +IV LL
Sbjct  58   KDNGRTALHYAARSGHLEIVKLL  80


 Score = 75.2 bits (185),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 9/89 (10%)

Query  166  DVIELLLGTGCALDGADGRDELGRTPLHWACATGKLRVAELLLTRRRGPIADVNAVELRN  225
            ++++LLL  G     A+ +D+ GRT LH A   G L + +LLL       ADVN  +   
Sbjct  11   ELVKLLLENGA---DANLQDKNGRTALHLAAKNGHLEIVKLLLEH-----ADVNLKD-NG  61

Query  226  KTSLHIAAAHGREDIVQLLLKHGADIEAR  254
            +T+LH AA  G  +IV+LLL+ GADI  +
Sbjct  62   RTALHYAARSGHLEIVKLLLEKGADINVK  90


 Score = 69.4 bits (170),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (54%), Gaps = 3/93 (3%)

Query  54   LMRSCERGSIAATQYLLSLGAKTEVPS-NRVAPLLRAVEHNHVRIVQLLLDYGASTETAD  112
            L  + + G++   + LL  GA   +   N    L  A ++ H+ IV+LLL++       +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKDN  60

Query  113  KKGRTSLMTAAWRNHWHVLQVLISRGADVNAKD  145
              GRT+L  AA   H  ++++L+ +GAD+N KD
Sbjct  61   --GRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 60.1 bits (146),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 46/135 (34%)

Query  86   LLRAVEHNHVRIVQLLLDYGASTETADKKGRTSLMTAAWRNHWHVLQVLISRGADVNAKD  145
            L  A ++ ++ +V+LLL+ GA     DK GRT+L  AA   H  ++++L+   ADVN KD
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  146  LRKRNVLHNLAADKQCDWGEDVIELLLGTGCALDGADGRDELGRTPLHWACATGKLRVAE  205
                                                      GRT LH+A  +G L + +
Sbjct  60   -----------------------------------------NGRTALHYAARSGHLEIVK  78

Query  206  LLLTRRRGPIADVNA  220
            LLL +     AD+N 
Sbjct  79   LLLEKG----ADINV  89


>CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies).  
Length=54

 Score = 63.8 bits (156),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 0/52 (0%)

Query  227  TSLHIAAAHGREDIVQLLLKHGADIEARSDGGWTPLHNACDKGAVEIVRLLL  278
            T+LH AAA G  ++++LLL+ GADI A    G T LH A   G VE+++LLL
Sbjct  3    TALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54


 Score = 60.8 bits (148),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 34/54 (63%), Gaps = 0/54 (0%)

Query  258  GWTPLHNACDKGAVEIVRLLLQAGAKINAQLLNGVTPLHLAAQAGHREVVECLL  311
              T LH A   G +E++RLLL+ GA INA   NG T LH AA  G+ EV++ LL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54


>CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein.  The CorA 
transport system is the primary Mg2+ influx system of Salmonella 
typhimurium and Escherichia coli. CorA is virtually ubiquitous 
in the Bacteria and Archaea. There are also eukaryotic 
relatives of this protein. The family includes the MRS2 
protein from yeast that is thought to be an RNA splicing protein. 
However its membership of this family suggests that its 
effect on splicing is due to altered magnesium levels in 
the cell.
Length=292

 Score = 67.0 bits (164),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 32/193 (17%)

Query  831   FVDNLLDIGQETDLLAEA------KDIRDELNMIRTVLQHQQHILDDFQEVICEIYHGQH  884
             F++ L  +  E D L +        ++  EL  +R  L + +  L   ++V+  +     
Sbjct  123   FLELLEKLEDELDELEDELEDETNNELLRELAALRRSLVYLRRSLLPQRDVLNRLL----  178

Query  885   RSQYEVKKRFKEQQRTIDMHLKDIERMDKQAERIYSSITDLLDLKQKHANAFEARFARDQ  944
               + +      EQ+  +   L  +ER+ +  + +   +  L D        + +  +   
Sbjct  179   -RREDDPLLDDEQKEYLRDLLDRLERLLEDLDALRERLRSLQDE-------YSSLLSE--  228

Query  945   AADTTRQGKTIMVFTIVTIIFLPLSFITSIFTINLTEFPKGPDGVGELHLSYVAKYTFGI  1004
                  R  + + V T+VT IFLPL+ IT I+ +N    P       EL  SY   +   +
Sbjct  229   -----RTNRVMKVLTVVTAIFLPLTLITGIYGMNFGGLP-------ELEWSYGYPFVLIL  276

Query  1005  GFAISIPLILLAL  1017
             G  I + ++LL  
Sbjct  277   GLMILLAILLLFY  289



Lambda      K        H        a         alpha
   0.320    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0571    0.140     1.90     42.6     43.6 

Effective search space used: 1382275620


Query= TCONS_00002496

Length=1087
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               94.0    1e-23
CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies)            63.8    2e-13
CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein. T...  67.0    3e-12


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 94.0 bits (234),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 58/85 (68%), Gaps = 2/85 (2%)

Query  229  LHIAAAHGREDIVQLLLKHGADIEARSDGGWTPLHNACDKGAVEIVRLLLQAGAKINAQL  288
            LH+AA +G  ++V+LLL++GAD   +   G T LH A   G +EIV+LLL+  A +N + 
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLK-  58

Query  289  LNGVTPLHLAAQAGHREVVECLLER  313
             NG T LH AA++GH E+V+ LLE+
Sbjct  59   DNGRTALHYAARSGHLEIVKLLLEK  83


 Score = 89.0 bits (221),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 42/96 (44%), Positives = 58/96 (60%), Gaps = 6/96 (6%)

Query  192  LHWACATGKLRVAELLLTRRRGPIADVNAVELRNKTSLHIAAAHGREDIVQLLLKHGADI  251
            LH A   G L + +LLL       AD N  +   +T+LH+AA +G  +IV+LLL+H AD+
Sbjct  1    LHLAAKNGNLELVKLLLENG----ADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADV  55

Query  252  EARSDGGWTPLHNACDKGAVEIVRLLLQAGAKINAQ  287
              + D G T LH A   G +EIV+LLL+ GA IN +
Sbjct  56   NLK-DNGRTALHYAARSGHLEIVKLLLEKGADINVK  90


 Score = 81.7 bits (202),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 37/83 (45%), Positives = 48/83 (58%), Gaps = 3/83 (4%)

Query  262  LHNACDKGAVEIVRLLLQAGAKINAQLLNGVTPLHLAAQAGHREVVECLLERPDLKRRVR  321
            LH A   G +E+V+LLL+ GA  N Q  NG T LHLAA+ GH E+V+ LLE  D+     
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVN---L  57

Query  322  DNFGSTPFLRAAQFKRKDIVLLL  344
             + G T    AA+    +IV LL
Sbjct  58   KDNGRTALHYAARSGHLEIVKLL  80


 Score = 75.2 bits (185),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 9/89 (10%)

Query  166  DVIELLLGTGCALDGADGRDELGRTPLHWACATGKLRVAELLLTRRRGPIADVNAVELRN  225
            ++++LLL  G     A+ +D+ GRT LH A   G L + +LLL       ADVN  +   
Sbjct  11   ELVKLLLENGA---DANLQDKNGRTALHLAAKNGHLEIVKLLLEH-----ADVNLKD-NG  61

Query  226  KTSLHIAAAHGREDIVQLLLKHGADIEAR  254
            +T+LH AA  G  +IV+LLL+ GADI  +
Sbjct  62   RTALHYAARSGHLEIVKLLLEKGADINVK  90


 Score = 69.4 bits (170),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (54%), Gaps = 3/93 (3%)

Query  54   LMRSCERGSIAATQYLLSLGAKTEVPS-NRVAPLLRAVEHNHVRIVQLLLDYGASTETAD  112
            L  + + G++   + LL  GA   +   N    L  A ++ H+ IV+LLL++       +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKDN  60

Query  113  KKGRTSLMTAAWRNHWHVLQVLISRGADVNAKD  145
              GRT+L  AA   H  ++++L+ +GAD+N KD
Sbjct  61   --GRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 60.1 bits (146),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 46/135 (34%)

Query  86   LLRAVEHNHVRIVQLLLDYGASTETADKKGRTSLMTAAWRNHWHVLQVLISRGADVNAKD  145
            L  A ++ ++ +V+LLL+ GA     DK GRT+L  AA   H  ++++L+   ADVN KD
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  146  LRKRNVLHNLAADKQCDWGEDVIELLLGTGCALDGADGRDELGRTPLHWACATGKLRVAE  205
                                                      GRT LH+A  +G L + +
Sbjct  60   -----------------------------------------NGRTALHYAARSGHLEIVK  78

Query  206  LLLTRRRGPIADVNA  220
            LLL +     AD+N 
Sbjct  79   LLLEKG----ADINV  89


>CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies).  
Length=54

 Score = 63.8 bits (156),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 0/52 (0%)

Query  227  TSLHIAAAHGREDIVQLLLKHGADIEARSDGGWTPLHNACDKGAVEIVRLLL  278
            T+LH AAA G  ++++LLL+ GADI A    G T LH A   G VE+++LLL
Sbjct  3    TALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54


 Score = 60.8 bits (148),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 34/54 (63%), Gaps = 0/54 (0%)

Query  258  GWTPLHNACDKGAVEIVRLLLQAGAKINAQLLNGVTPLHLAAQAGHREVVECLL  311
              T LH A   G +E++RLLL+ GA INA   NG T LH AA  G+ EV++ LL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54


>CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein.  The CorA 
transport system is the primary Mg2+ influx system of Salmonella 
typhimurium and Escherichia coli. CorA is virtually ubiquitous 
in the Bacteria and Archaea. There are also eukaryotic 
relatives of this protein. The family includes the MRS2 
protein from yeast that is thought to be an RNA splicing protein. 
However its membership of this family suggests that its 
effect on splicing is due to altered magnesium levels in 
the cell.
Length=292

 Score = 67.0 bits (164),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 32/193 (17%)

Query  831   FVDNLLDIGQETDLLAEA------KDIRDELNMIRTVLQHQQHILDDFQEVICEIYHGQH  884
             F++ L  +  E D L +        ++  EL  +R  L + +  L   ++V+  +     
Sbjct  123   FLELLEKLEDELDELEDELEDETNNELLRELAALRRSLVYLRRSLLPQRDVLNRLL----  178

Query  885   RSQYEVKKRFKEQQRTIDMHLKDIERMDKQAERIYSSITDLLDLKQKHANAFEARFARDQ  944
               + +      EQ+  +   L  +ER+ +  + +   +  L D        + +  +   
Sbjct  179   -RREDDPLLDDEQKEYLRDLLDRLERLLEDLDALRERLRSLQDE-------YSSLLSE--  228

Query  945   AADTTRQGKTIMVFTIVTIIFLPLSFITSIFTINLTEFPKGPDGVGELHLSYVAKYTFGI  1004
                  R  + + V T+VT IFLPL+ IT I+ +N    P       EL  SY   +   +
Sbjct  229   -----RTNRVMKVLTVVTAIFLPLTLITGIYGMNFGGLP-------ELEWSYGYPFVLIL  276

Query  1005  GFAISIPLILLAL  1017
             G  I + ++LL  
Sbjct  277   GLMILLAILLLFY  289



Lambda      K        H        a         alpha
   0.320    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1382275620


Query= TCONS_00002497

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                177     4e-52


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 177 bits (452),  Expect = 4e-52, Method: Composition-based stats.
 Identities = 91/321 (28%), Positives = 123/321 (38%), Gaps = 52/321 (16%)

Query  8    NFVFGRTLNPLNRALTAGGSSGGEGVLVAMRGCMVGFGTDIGGSIRVPAMCMGVYGFKPS  67
            N VFG T NP + + T GGSSGG    VA     +  GTD GGSIR+PA   G+ G KP+
Sbjct  112  NSVFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPASFCGLVGLKPT  171

Query  68   VGRVPFGGQEAGQIPGKGRIALQAVAGPIARSVRDLGTVMAEIVPRAELFGED-------  120
             GRV        +    G  +     GP+ARSV D   ++  I       G D       
Sbjct  172  YGRVS-------RYGVVGYASSLDQVGPLARSVEDAALLLRVIS------GYDPKDSTSL  218

Query  121  -CIPGLWDGEFPRSGRRRNVTIGVLRSDGVVQPLPPVARVLEEVAQMLRRTAGVEVVDIP  179
                  +    P     + + IGV R DG     P V R +EE    L    G EVV++ 
Sbjct  219  PPPVPDYA--EPVKKSLKGLRIGVYREDGYFDLDPEVRRAVEEALAQLEA-LGHEVVEVD  275

Query  180  VPP-----ALSKCQGLAG------RLMGVDDGSTMLDLL------EGTGEPLIPWLQ-GR  221
             P       L      A       R  GV  G   L  L      EG G+ +   +  G 
Sbjct  276  PPSLDYALPLYYLIAPAEASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRRIILGN  335

Query  222  VKRGKALSVVQLAQLQAQRSAVEKELLGMWMRDGDRLAGRSVDAIILPVAPHPVPEIDRY  281
                         + Q  R  + +E  G++           +D ++ P AP P P +   
Sbjct  336  YALSAGYYDKYYLKAQKVRRLIRREFAGLF---------EELDVLLSPTAPTPAPRL-GE  385

Query  282  NAVGYTSSFVLLDYPAGVIPV  302
                    + L D+ AGV+PV
Sbjct  386  PDDSPLVMYNLDDFTAGVVPV  406



Lambda      K        H        a         alpha
   0.320    0.140    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00007788

Length=897


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1151282228


Query= TCONS_00002499

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                177     4e-52


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 177 bits (452),  Expect = 4e-52, Method: Composition-based stats.
 Identities = 91/321 (28%), Positives = 123/321 (38%), Gaps = 52/321 (16%)

Query  8    NFVFGRTLNPLNRALTAGGSSGGEGVLVAMRGCMVGFGTDIGGSIRVPAMCMGVYGFKPS  67
            N VFG T NP + + T GGSSGG    VA     +  GTD GGSIR+PA   G+ G KP+
Sbjct  112  NSVFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPASFCGLVGLKPT  171

Query  68   VGRVPFGGQEAGQIPGKGRIALQAVAGPIARSVRDLGTVMAEIVPRAELFGED-------  120
             GRV        +    G  +     GP+ARSV D   ++  I       G D       
Sbjct  172  YGRVS-------RYGVVGYASSLDQVGPLARSVEDAALLLRVIS------GYDPKDSTSL  218

Query  121  -CIPGLWDGEFPRSGRRRNVTIGVLRSDGVVQPLPPVARVLEEVAQMLRRTAGVEVVDIP  179
                  +    P     + + IGV R DG     P V R +EE    L    G EVV++ 
Sbjct  219  PPPVPDYA--EPVKKSLKGLRIGVYREDGYFDLDPEVRRAVEEALAQLEA-LGHEVVEVD  275

Query  180  VPP-----ALSKCQGLAG------RLMGVDDGSTMLDLL------EGTGEPLIPWLQ-GR  221
             P       L      A       R  GV  G   L  L      EG G+ +   +  G 
Sbjct  276  PPSLDYALPLYYLIAPAEASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRRIILGN  335

Query  222  VKRGKALSVVQLAQLQAQRSAVEKELLGMWMRDGDRLAGRSVDAIILPVAPHPVPEIDRY  281
                         + Q  R  + +E  G++           +D ++ P AP P P +   
Sbjct  336  YALSAGYYDKYYLKAQKVRRLIRREFAGLF---------EELDVLLSPTAPTPAPRL-GE  385

Query  282  NAVGYTSSFVLLDYPAGVIPV  302
                    + L D+ AGV+PV
Sbjct  386  PDDSPLVMYNLDDFTAGVVPV  406



Lambda      K        H        a         alpha
   0.320    0.140    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00007789

Length=1087
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               94.0    1e-23
CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies)            63.8    2e-13
CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein. T...  67.0    3e-12


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 94.0 bits (234),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 58/85 (68%), Gaps = 2/85 (2%)

Query  229  LHIAAAHGREDIVQLLLKHGADIEARSDGGWTPLHNACDKGAVEIVRLLLQAGAKINAQL  288
            LH+AA +G  ++V+LLL++GAD   +   G T LH A   G +EIV+LLL+  A +N + 
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLK-  58

Query  289  LNGVTPLHLAAQAGHREVVECLLER  313
             NG T LH AA++GH E+V+ LLE+
Sbjct  59   DNGRTALHYAARSGHLEIVKLLLEK  83


 Score = 89.0 bits (221),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 42/96 (44%), Positives = 58/96 (60%), Gaps = 6/96 (6%)

Query  192  LHWACATGKLRVAELLLTRRRGPIADVNAVELRNKTSLHIAAAHGREDIVQLLLKHGADI  251
            LH A   G L + +LLL       AD N  +   +T+LH+AA +G  +IV+LLL+H AD+
Sbjct  1    LHLAAKNGNLELVKLLLENG----ADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADV  55

Query  252  EARSDGGWTPLHNACDKGAVEIVRLLLQAGAKINAQ  287
              + D G T LH A   G +EIV+LLL+ GA IN +
Sbjct  56   NLK-DNGRTALHYAARSGHLEIVKLLLEKGADINVK  90


 Score = 81.7 bits (202),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 37/83 (45%), Positives = 48/83 (58%), Gaps = 3/83 (4%)

Query  262  LHNACDKGAVEIVRLLLQAGAKINAQLLNGVTPLHLAAQAGHREVVECLLERPDLKRRVR  321
            LH A   G +E+V+LLL+ GA  N Q  NG T LHLAA+ GH E+V+ LLE  D+     
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVN---L  57

Query  322  DNFGSTPFLRAAQFKRKDIVLLL  344
             + G T    AA+    +IV LL
Sbjct  58   KDNGRTALHYAARSGHLEIVKLL  80


 Score = 75.2 bits (185),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 9/89 (10%)

Query  166  DVIELLLGTGCALDGADGRDELGRTPLHWACATGKLRVAELLLTRRRGPIADVNAVELRN  225
            ++++LLL  G     A+ +D+ GRT LH A   G L + +LLL       ADVN  +   
Sbjct  11   ELVKLLLENGA---DANLQDKNGRTALHLAAKNGHLEIVKLLLEH-----ADVNLKD-NG  61

Query  226  KTSLHIAAAHGREDIVQLLLKHGADIEAR  254
            +T+LH AA  G  +IV+LLL+ GADI  +
Sbjct  62   RTALHYAARSGHLEIVKLLLEKGADINVK  90


 Score = 69.4 bits (170),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (54%), Gaps = 3/93 (3%)

Query  54   LMRSCERGSIAATQYLLSLGAKTEVPS-NRVAPLLRAVEHNHVRIVQLLLDYGASTETAD  112
            L  + + G++   + LL  GA   +   N    L  A ++ H+ IV+LLL++       +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKDN  60

Query  113  KKGRTSLMTAAWRNHWHVLQVLISRGADVNAKD  145
              GRT+L  AA   H  ++++L+ +GAD+N KD
Sbjct  61   --GRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 60.1 bits (146),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 46/135 (34%)

Query  86   LLRAVEHNHVRIVQLLLDYGASTETADKKGRTSLMTAAWRNHWHVLQVLISRGADVNAKD  145
            L  A ++ ++ +V+LLL+ GA     DK GRT+L  AA   H  ++++L+   ADVN KD
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  146  LRKRNVLHNLAADKQCDWGEDVIELLLGTGCALDGADGRDELGRTPLHWACATGKLRVAE  205
                                                      GRT LH+A  +G L + +
Sbjct  60   -----------------------------------------NGRTALHYAARSGHLEIVK  78

Query  206  LLLTRRRGPIADVNA  220
            LLL +     AD+N 
Sbjct  79   LLLEKG----ADINV  89


>CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies).  
Length=54

 Score = 63.8 bits (156),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 0/52 (0%)

Query  227  TSLHIAAAHGREDIVQLLLKHGADIEARSDGGWTPLHNACDKGAVEIVRLLL  278
            T+LH AAA G  ++++LLL+ GADI A    G T LH A   G VE+++LLL
Sbjct  3    TALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54


 Score = 60.8 bits (148),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 34/54 (63%), Gaps = 0/54 (0%)

Query  258  GWTPLHNACDKGAVEIVRLLLQAGAKINAQLLNGVTPLHLAAQAGHREVVECLL  311
              T LH A   G +E++RLLL+ GA INA   NG T LH AA  G+ EV++ LL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54


>CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein.  The CorA 
transport system is the primary Mg2+ influx system of Salmonella 
typhimurium and Escherichia coli. CorA is virtually ubiquitous 
in the Bacteria and Archaea. There are also eukaryotic 
relatives of this protein. The family includes the MRS2 
protein from yeast that is thought to be an RNA splicing protein. 
However its membership of this family suggests that its 
effect on splicing is due to altered magnesium levels in 
the cell.
Length=292

 Score = 67.0 bits (164),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 32/193 (17%)

Query  831   FVDNLLDIGQETDLLAEA------KDIRDELNMIRTVLQHQQHILDDFQEVICEIYHGQH  884
             F++ L  +  E D L +        ++  EL  +R  L + +  L   ++V+  +     
Sbjct  123   FLELLEKLEDELDELEDELEDETNNELLRELAALRRSLVYLRRSLLPQRDVLNRLL----  178

Query  885   RSQYEVKKRFKEQQRTIDMHLKDIERMDKQAERIYSSITDLLDLKQKHANAFEARFARDQ  944
               + +      EQ+  +   L  +ER+ +  + +   +  L D        + +  +   
Sbjct  179   -RREDDPLLDDEQKEYLRDLLDRLERLLEDLDALRERLRSLQDE-------YSSLLSE--  228

Query  945   AADTTRQGKTIMVFTIVTIIFLPLSFITSIFTINLTEFPKGPDGVGELHLSYVAKYTFGI  1004
                  R  + + V T+VT IFLPL+ IT I+ +N    P       EL  SY   +   +
Sbjct  229   -----RTNRVMKVLTVVTAIFLPLTLITGIYGMNFGGLP-------ELEWSYGYPFVLIL  276

Query  1005  GFAISIPLILLAL  1017
             G  I + ++LL  
Sbjct  277   GLMILLAILLLFY  289



Lambda      K        H        a         alpha
   0.320    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1382275620


Query= TCONS_00002500

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                177     4e-52


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 177 bits (452),  Expect = 4e-52, Method: Composition-based stats.
 Identities = 91/321 (28%), Positives = 123/321 (38%), Gaps = 52/321 (16%)

Query  8    NFVFGRTLNPLNRALTAGGSSGGEGVLVAMRGCMVGFGTDIGGSIRVPAMCMGVYGFKPS  67
            N VFG T NP + + T GGSSGG    VA     +  GTD GGSIR+PA   G+ G KP+
Sbjct  112  NSVFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPASFCGLVGLKPT  171

Query  68   VGRVPFGGQEAGQIPGKGRIALQAVAGPIARSVRDLGTVMAEIVPRAELFGED-------  120
             GRV        +    G  +     GP+ARSV D   ++  I       G D       
Sbjct  172  YGRVS-------RYGVVGYASSLDQVGPLARSVEDAALLLRVIS------GYDPKDSTSL  218

Query  121  -CIPGLWDGEFPRSGRRRNVTIGVLRSDGVVQPLPPVARVLEEVAQMLRRTAGVEVVDIP  179
                  +    P     + + IGV R DG     P V R +EE    L    G EVV++ 
Sbjct  219  PPPVPDYA--EPVKKSLKGLRIGVYREDGYFDLDPEVRRAVEEALAQLEA-LGHEVVEVD  275

Query  180  VPP-----ALSKCQGLAG------RLMGVDDGSTMLDLL------EGTGEPLIPWLQ-GR  221
             P       L      A       R  GV  G   L  L      EG G+ +   +  G 
Sbjct  276  PPSLDYALPLYYLIAPAEASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRRIILGN  335

Query  222  VKRGKALSVVQLAQLQAQRSAVEKELLGMWMRDGDRLAGRSVDAIILPVAPHPVPEIDRY  281
                         + Q  R  + +E  G++           +D ++ P AP P P +   
Sbjct  336  YALSAGYYDKYYLKAQKVRRLIRREFAGLF---------EELDVLLSPTAPTPAPRL-GE  385

Query  282  NAVGYTSSFVLLDYPAGVIPV  302
                    + L D+ AGV+PV
Sbjct  386  PDDSPLVMYNLDDFTAGVVPV  406



Lambda      K        H        a         alpha
   0.320    0.140    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00002501

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismuta...  156     2e-50
CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismuta...  123     2e-37


>CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismutases, C-terminal 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and molecular 
oxygen. Three evolutionarily distinct families of SODs 
are known, of which the Mn/Fe-binding family is one. In 
humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. C-terminal domain is a mixed alpha/beta fold.
Length=102

 Score = 156 bits (398),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 54/99 (55%), Positives = 65/99 (66%), Gaps = 3/99 (3%)

Query  100  LKAAIEQRWGSFDKFKDAFNTTLLGIQGSGWGWLVTDGPKGKLDITTTHDQDP--VTGAA  157
            L  AIE+ +GSFD FK+ FN    G+ GSGW WLV D P GKL+I TT +QD     G  
Sbjct  5    LAEAIEKDFGSFDAFKEEFNAAAAGVFGSGWAWLVYD-PDGKLEIVTTPNQDNPLTDGLT  63

Query  158  PVFGVDMWEHAYYLQYLNDKASYAKGIWNVINWAEAENR  196
            P+ G+D+WEHAYYL Y N +A Y K  WNV+NW E E R
Sbjct  64   PLLGLDVWEHAYYLDYQNRRADYVKAFWNVVNWDEVEKR  102


>CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismutases, alpha-hairpin 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and 
molecular oxygen. Three evolutionarily distinct families of 
SODs are known, of which the Mn/Fe-binding family is one. 
In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. N-terminal domain is a long alpha antiparallel 
hairpin. A small fragment of YTRE_LEPBI matches well - sequencing 
error?.
Length=82

 Score = 123 bits (310),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 46/81 (57%), Positives = 60/81 (74%), Gaps = 0/81 (0%)

Query  5   YTLPPLPYPYDALQPYISQQIMELHHKKHHQTYVNGLNAALEAQKKAAEANDVPKLVSVQ  64
           Y LP LPY YDAL+P+IS++ ME+HH KHHQTYVN LNAALE  ++A +  +   + ++ 
Sbjct  2   YELPDLPYAYDALEPHISKETMEIHHTKHHQTYVNNLNAALEGLEEARKPLEELIIKALL  61

Query  65  QAIKFNGGGHINHSLFWKNLA  85
             +  NGGGH NHSLFWKNL+
Sbjct  62  GGLFNNGGGHWNHSLFWKNLS  82



Lambda      K        H        a         alpha
   0.316    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00007791

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismuta...  156     4e-50
CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismuta...  99.3    3e-28


>CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismutases, C-terminal 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and molecular 
oxygen. Three evolutionarily distinct families of SODs 
are known, of which the Mn/Fe-binding family is one. In 
humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. C-terminal domain is a mixed alpha/beta fold.
Length=102

 Score = 156 bits (396),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 54/99 (55%), Positives = 65/99 (66%), Gaps = 3/99 (3%)

Query  87   LKAAIEQRWGSFDKFKDAFNTTLLGIQGSGWGWLVTDGPKGKLDITTTHDQDP--VTGAA  144
            L  AIE+ +GSFD FK+ FN    G+ GSGW WLV D P GKL+I TT +QD     G  
Sbjct  5    LAEAIEKDFGSFDAFKEEFNAAAAGVFGSGWAWLVYD-PDGKLEIVTTPNQDNPLTDGLT  63

Query  145  PVFGVDMWEHAYYLQYLNDKASYAKGIWNVINWAEAENR  183
            P+ G+D+WEHAYYL Y N +A Y K  WNV+NW E E R
Sbjct  64   PLLGLDVWEHAYYLDYQNRRADYVKAFWNVVNWDEVEKR  102


>CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismutases, alpha-hairpin 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and 
molecular oxygen. Three evolutionarily distinct families of 
SODs are known, of which the Mn/Fe-binding family is one. 
In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. N-terminal domain is a long alpha antiparallel 
hairpin. A small fragment of YTRE_LEPBI matches well - sequencing 
error?.
Length=82

 Score = 99.3 bits (248),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 52/70 (74%), Gaps = 0/70 (0%)

Query  3   ALQPYISQQIMELHHKKHHQTYVNGLNAALEAQKKAAEANDVPKLVSVQQAIKFNGGGHI  62
           AL+P+IS++ ME+HH KHHQTYVN LNAALE  ++A +  +   + ++   +  NGGGH 
Sbjct  13  ALEPHISKETMEIHHTKHHQTYVNNLNAALEGLEEARKPLEELIIKALLGGLFNNGGGHW  72

Query  63  NHSLFWKNLA  72
           NHSLFWKNL+
Sbjct  73  NHSLFWKNLS  82



Lambda      K        H        a         alpha
   0.316    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00002502

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00002503

Length=872
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459948 pfam00815, Histidinol_dh, Histidinol dehydrogenase         633     0.0  
CDD:460233 pfam01502, PRA-CH, Phosphoribosyl-AMP cyclohydrolase. ...  117     6e-32
CDD:426294 pfam01503, PRA-PH, Phosphoribosyl-ATP pyrophosphohydro...  84.2    3e-20


>CDD:459948 pfam00815, Histidinol_dh, Histidinol dehydrogenase.  
Length=410

 Score = 633 bits (1637),  Expect = 0.0, Method: Composition-based stats.
 Identities = 219/422 (52%), Positives = 284/422 (67%), Gaps = 18/422 (4%)

Query  449  LKRPSQKSNDAIVGLVRPIIQDVRDGGDAAVLKYTHKFEKATSLTSPVIRAPFPPELM--  506
            LKRP     D +   VR II+DVR+ GDAA+L+YT KF+         +      E +  
Sbjct  1    LKRPEL-DVDEVEETVREIIEDVRERGDAALLEYTEKFDGVELGVLLRV----SEEEIEA  55

Query  507  ---KLSPETQEAIDVSIANIKKFHSAQKDSNDVLQVETMPGVVCSRFSRPIERVGLYVPG  563
               KL PE +EAI+++  NI+ FH AQK S   +  ET PGVV  +  RPIERVGLYVPG
Sbjct  56   AYAKLDPELKEAIELAAENIRAFHEAQKPSELWVY-ETEPGVVLGQRVRPIERVGLYVPG  114

Query  564  GTAVLPSTAMMLGVPAMVAGCQKIVLASPPRADGSISPEIVYVAHKVGAESIVLAGGAQA  623
            GTA  PS+ +M  +PA VAG ++IV+ +PP+ DG I+P I+  AH  G + I   GGAQA
Sbjct  115  GTAPYPSSVLMNAIPAKVAGVKEIVMCTPPQKDGKINPAILAAAHLAGVDEIYKVGGAQA  174

Query  624  VAAMAYGTESISKVDKILGPGNQFVTAAKMLVSNDTSAGVSIDMPAGPSEVLVIADKDAN  683
            +AA+AYGTE+I KVDKI+GPGN +VTAAK LV  D    V IDMPAGPSEVLVIAD+ AN
Sbjct  175  IAALAYGTETIPKVDKIVGPGNIYVTAAKRLVFGD----VGIDMPAGPSEVLVIADETAN  230

Query  684  PAFVASDLLSQAEHGVDSQVILIAIDLNESQLQAIEDEVDAQARALPRMDIVRGSLAH-S  742
            P FVA+DLLSQAEH  D+Q IL+     E   +A+E EV+ Q   LPR +I R SL +  
Sbjct  231  PEFVAADLLSQAEHDPDAQAILVTTS--EELAEAVEAEVERQLATLPRKEIARKSLENYG  288

Query  743  VTFVVRDIDEAMALSNEYAPEHLILQVKNAESVVEKVVNAGSVFIGQWTPESVGDYSAGV  802
               +V D++EA+ LSNEYAPEHL LQ ++ E+++EK+ NAGS+F+G++TPES+GDY+AG 
Sbjct  289  AIILVDDLEEAIELSNEYAPEHLELQTEDPEALLEKIRNAGSIFLGEYTPESLGDYAAGP  348

Query  803  NHSLPTYGYAKQYSGVNLGSFLKHITSSNLTAEGLLGLSRTVEQLAAVEGLDAHKRAVSI  862
            NH LPT G A+ YSG+++  FLK  +    + EGL  L   VE LA  EGL+AH  AV +
Sbjct  349  NHVLPTSGTARFYSGLSVDDFLKKSSVQEYSKEGLKELGPAVETLAEAEGLEAHANAVRV  408

Query  863  RV  864
            R+
Sbjct  409  RL  410


>CDD:460233 pfam01502, PRA-CH, Phosphoribosyl-AMP cyclohydrolase.  This enzyme 
catalyzes the third step in the histidine biosynthetic 
pathway. It requires Zn ions for activity.
Length=74

 Score = 117 bits (295),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 31/74 (42%), Positives = 46/74 (62%), Gaps = 2/74 (3%)

Query  223  LVWSSDESIAEALRTGTGVYQSRKR-GLWYKGQSSGDVQELIRLGFDCDSDCLVFVVKQI  281
            L + + E++ + L TG   Y SR R  LW+KG++SG+ Q+++ +  DCD D L+  V+Q 
Sbjct  2    LAYMNREALEKTLETGRATYWSRSRQRLWHKGETSGNTQKVVEIRLDCDGDALLLKVEQK  61

Query  282  GRGFCHLGTASCFG  295
            G   CH GT SCF 
Sbjct  62   G-PACHTGTRSCFY  74


>CDD:426294 pfam01503, PRA-PH, Phosphoribosyl-ATP pyrophosphohydrolase.  
This enzyme catalyzes the second step in the histidine biosynthetic 
pathway.
Length=83

 Score = 84.2 bits (209),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 30/84 (36%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query  300  LARLQKTLQARKADAPAGSYTARLFNEPKLTQAKIMEEADELCRAT---TKEEIAFEAAD  356
            +    +T+  RK + P GS TA L        AKI EEA EL  A       E+A E AD
Sbjct  1    VREFHRTIGDRKPETPEGS-TAELAALR---AAKIGEEAVELLEAAKAGDLAELADELAD  56

Query  357  LLYFALTRCVAAGVSLEDIERNLD  380
            LLY      V  GV L+ +   + 
Sbjct  57   LLYHTYGLLVLQGVDLDAVFEEVH  80



Lambda      K        H        a         alpha
   0.314    0.129    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1115394378


Query= TCONS_00002504

Length=872
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459948 pfam00815, Histidinol_dh, Histidinol dehydrogenase         633     0.0  
CDD:460233 pfam01502, PRA-CH, Phosphoribosyl-AMP cyclohydrolase. ...  117     6e-32
CDD:426294 pfam01503, PRA-PH, Phosphoribosyl-ATP pyrophosphohydro...  84.2    3e-20


>CDD:459948 pfam00815, Histidinol_dh, Histidinol dehydrogenase.  
Length=410

 Score = 633 bits (1637),  Expect = 0.0, Method: Composition-based stats.
 Identities = 219/422 (52%), Positives = 284/422 (67%), Gaps = 18/422 (4%)

Query  449  LKRPSQKSNDAIVGLVRPIIQDVRDGGDAAVLKYTHKFEKATSLTSPVIRAPFPPELM--  506
            LKRP     D +   VR II+DVR+ GDAA+L+YT KF+         +      E +  
Sbjct  1    LKRPEL-DVDEVEETVREIIEDVRERGDAALLEYTEKFDGVELGVLLRV----SEEEIEA  55

Query  507  ---KLSPETQEAIDVSIANIKKFHSAQKDSNDVLQVETMPGVVCSRFSRPIERVGLYVPG  563
               KL PE +EAI+++  NI+ FH AQK S   +  ET PGVV  +  RPIERVGLYVPG
Sbjct  56   AYAKLDPELKEAIELAAENIRAFHEAQKPSELWVY-ETEPGVVLGQRVRPIERVGLYVPG  114

Query  564  GTAVLPSTAMMLGVPAMVAGCQKIVLASPPRADGSISPEIVYVAHKVGAESIVLAGGAQA  623
            GTA  PS+ +M  +PA VAG ++IV+ +PP+ DG I+P I+  AH  G + I   GGAQA
Sbjct  115  GTAPYPSSVLMNAIPAKVAGVKEIVMCTPPQKDGKINPAILAAAHLAGVDEIYKVGGAQA  174

Query  624  VAAMAYGTESISKVDKILGPGNQFVTAAKMLVSNDTSAGVSIDMPAGPSEVLVIADKDAN  683
            +AA+AYGTE+I KVDKI+GPGN +VTAAK LV  D    V IDMPAGPSEVLVIAD+ AN
Sbjct  175  IAALAYGTETIPKVDKIVGPGNIYVTAAKRLVFGD----VGIDMPAGPSEVLVIADETAN  230

Query  684  PAFVASDLLSQAEHGVDSQVILIAIDLNESQLQAIEDEVDAQARALPRMDIVRGSLAH-S  742
            P FVA+DLLSQAEH  D+Q IL+     E   +A+E EV+ Q   LPR +I R SL +  
Sbjct  231  PEFVAADLLSQAEHDPDAQAILVTTS--EELAEAVEAEVERQLATLPRKEIARKSLENYG  288

Query  743  VTFVVRDIDEAMALSNEYAPEHLILQVKNAESVVEKVVNAGSVFIGQWTPESVGDYSAGV  802
               +V D++EA+ LSNEYAPEHL LQ ++ E+++EK+ NAGS+F+G++TPES+GDY+AG 
Sbjct  289  AIILVDDLEEAIELSNEYAPEHLELQTEDPEALLEKIRNAGSIFLGEYTPESLGDYAAGP  348

Query  803  NHSLPTYGYAKQYSGVNLGSFLKHITSSNLTAEGLLGLSRTVEQLAAVEGLDAHKRAVSI  862
            NH LPT G A+ YSG+++  FLK  +    + EGL  L   VE LA  EGL+AH  AV +
Sbjct  349  NHVLPTSGTARFYSGLSVDDFLKKSSVQEYSKEGLKELGPAVETLAEAEGLEAHANAVRV  408

Query  863  RV  864
            R+
Sbjct  409  RL  410


>CDD:460233 pfam01502, PRA-CH, Phosphoribosyl-AMP cyclohydrolase.  This enzyme 
catalyzes the third step in the histidine biosynthetic 
pathway. It requires Zn ions for activity.
Length=74

 Score = 117 bits (295),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 31/74 (42%), Positives = 46/74 (62%), Gaps = 2/74 (3%)

Query  223  LVWSSDESIAEALRTGTGVYQSRKR-GLWYKGQSSGDVQELIRLGFDCDSDCLVFVVKQI  281
            L + + E++ + L TG   Y SR R  LW+KG++SG+ Q+++ +  DCD D L+  V+Q 
Sbjct  2    LAYMNREALEKTLETGRATYWSRSRQRLWHKGETSGNTQKVVEIRLDCDGDALLLKVEQK  61

Query  282  GRGFCHLGTASCFG  295
            G   CH GT SCF 
Sbjct  62   G-PACHTGTRSCFY  74


>CDD:426294 pfam01503, PRA-PH, Phosphoribosyl-ATP pyrophosphohydrolase.  
This enzyme catalyzes the second step in the histidine biosynthetic 
pathway.
Length=83

 Score = 84.2 bits (209),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 30/84 (36%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query  300  LARLQKTLQARKADAPAGSYTARLFNEPKLTQAKIMEEADELCRAT---TKEEIAFEAAD  356
            +    +T+  RK + P GS TA L        AKI EEA EL  A       E+A E AD
Sbjct  1    VREFHRTIGDRKPETPEGS-TAELAALR---AAKIGEEAVELLEAAKAGDLAELADELAD  56

Query  357  LLYFALTRCVAAGVSLEDIERNLD  380
            LLY      V  GV L+ +   + 
Sbjct  57   LLYHTYGLLVLQGVDLDAVFEEVH  80



Lambda      K        H        a         alpha
   0.314    0.129    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1115394378


Query= TCONS_00002505

Length=865
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459948 pfam00815, Histidinol_dh, Histidinol dehydrogenase         550     0.0  
CDD:460233 pfam01502, PRA-CH, Phosphoribosyl-AMP cyclohydrolase. ...  117     6e-32
CDD:426294 pfam01503, PRA-PH, Phosphoribosyl-ATP pyrophosphohydro...  84.6    1e-20


>CDD:459948 pfam00815, Histidinol_dh, Histidinol dehydrogenase.  
Length=410

 Score = 550 bits (1421),  Expect = 0.0, Method: Composition-based stats.
 Identities = 193/364 (53%), Positives = 249/364 (68%), Gaps = 18/364 (5%)

Query  449  LKRPSQKSNDAIVGLVRPIIQDVRDGGDAAVLKYTHKFEKATSLTSPVIRAPFPPELM--  506
            LKRP     D +   VR II+DVR+ GDAA+L+YT KF+         +      E +  
Sbjct  1    LKRPEL-DVDEVEETVREIIEDVRERGDAALLEYTEKFDGVELGVLLRV----SEEEIEA  55

Query  507  ---KLSPETQEAIDVSIANIKKFHSAQKDSNDVLQVETMPGVVCSRFSRPIERVGLYVPG  563
               KL PE +EAI+++  NI+ FH AQK S   +  ET PGVV  +  RPIERVGLYVPG
Sbjct  56   AYAKLDPELKEAIELAAENIRAFHEAQKPSELWVY-ETEPGVVLGQRVRPIERVGLYVPG  114

Query  564  GTAVLPSTAMMLGVPAMVAGCQKIVLASPPRADGSISPEIVYVAHKVGAESIVLAGGAQA  623
            GTA  PS+ +M  +PA VAG ++IV+ +PP+ DG I+P I+  AH  G + I   GGAQA
Sbjct  115  GTAPYPSSVLMNAIPAKVAGVKEIVMCTPPQKDGKINPAILAAAHLAGVDEIYKVGGAQA  174

Query  624  VAAMAYGTESISKVDKILGPGNQFVTAAKMLVSNDTSAGVSIDMPAGPSEVLVIADKDAN  683
            +AA+AYGTE+I KVDKI+GPGN +VTAAK LV  D    V IDMPAGPSEVLVIAD+ AN
Sbjct  175  IAALAYGTETIPKVDKIVGPGNIYVTAAKRLVFGD----VGIDMPAGPSEVLVIADETAN  230

Query  684  PAFVASDLLSQAEHGVDSQVILIAIDLNESQLQAIEDEVDAQARALPRMDIVRGSLAH-S  742
            P FVA+DLLSQAEH  D+Q IL+     E   +A+E EV+ Q   LPR +I R SL +  
Sbjct  231  PEFVAADLLSQAEHDPDAQAILVTTS--EELAEAVEAEVERQLATLPRKEIARKSLENYG  288

Query  743  VTFVVRDIDEAMALSNEYAPEHLILQVKNAESVVEKVVNAGSVFIGQWTPESVGDYSAGV  802
               +V D++EA+ LSNEYAPEHL LQ ++ E+++EK+ NAGS+F+G++TPES+GDY+AG 
Sbjct  289  AIILVDDLEEAIELSNEYAPEHLELQTEDPEALLEKIRNAGSIFLGEYTPESLGDYAAGP  348

Query  803  NHSL  806
            NH L
Sbjct  349  NHVL  352


>CDD:460233 pfam01502, PRA-CH, Phosphoribosyl-AMP cyclohydrolase.  This enzyme 
catalyzes the third step in the histidine biosynthetic 
pathway. It requires Zn ions for activity.
Length=74

 Score = 117 bits (295),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 31/74 (42%), Positives = 46/74 (62%), Gaps = 2/74 (3%)

Query  223  LVWSSDESIAEALRTGTGVYQSRKR-GLWYKGQSSGDVQELIRLGFDCDSDCLVFVVKQI  281
            L + + E++ + L TG   Y SR R  LW+KG++SG+ Q+++ +  DCD D L+  V+Q 
Sbjct  2    LAYMNREALEKTLETGRATYWSRSRQRLWHKGETSGNTQKVVEIRLDCDGDALLLKVEQK  61

Query  282  GRGFCHLGTASCFG  295
            G   CH GT SCF 
Sbjct  62   G-PACHTGTRSCFY  74


>CDD:426294 pfam01503, PRA-PH, Phosphoribosyl-ATP pyrophosphohydrolase.  
This enzyme catalyzes the second step in the histidine biosynthetic 
pathway.
Length=83

 Score = 84.6 bits (210),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 30/84 (36%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query  300  LARLQKTLQARKADAPAGSYTARLFNEPKLTQAKIMEEADELCRAT---TKEEIAFEAAD  356
            +    +T+  RK + P GS TA L        AKI EEA EL  A       E+A E AD
Sbjct  1    VREFHRTIGDRKPETPEGS-TAELAALR---AAKIGEEAVELLEAAKAGDLAELADELAD  56

Query  357  LLYFALTRCVAAGVSLEDIERNLD  380
            LLY      V  GV L+ +   + 
Sbjct  57   LLYHTYGLLVLQGVDLDAVFEEVH  80



Lambda      K        H        a         alpha
   0.315    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1105345780


Query= TCONS_00002506

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462403 pfam08235, LNS2, LNS2 (Lipin/Ned1/Smp2). This domain i...  182     4e-58


>CDD:462403 pfam08235, LNS2, LNS2 (Lipin/Ned1/Smp2).  This domain is found 
in Saccharomyces cerevisiae protein SMP2, proteins with an 
N-terminal lipin domain (pfam04571). SMP2 (also known as PAH1) 
is involved in plasmid maintenance and respiration, and 
has been identified as a Mg2+-dependent phosphatidate phosphatase 
(EC:3.1.3.4) that contains a haloacid dehalogenase (HAD)-like 
domain. Lipin proteins are involved in adipose tissue 
development and insulin resistance.
Length=226

 Score = 182 bits (464),  Expect = 4e-58, Method: Composition-based stats.
 Identities = 62/100 (62%), Positives = 76/100 (76%), Gaps = 2/100 (2%)

Query  1    MSPDRTIAALRREIYLRKPEVFKMACLRDILGLFNGKENPFYAGFGNRLTDALSYRSVNI  60
            +SPDR  +AL RE+ LRKPEVFK+ACLRDI  LF    NPFYAGFGNR+TD +SYR+V I
Sbjct  129  LSPDRLFSALHREVILRKPEVFKIACLRDIKSLFPPDVNPFYAGFGNRITDVISYRAVGI  188

Query  61   PSTRIFTINSNAEVSLDLLSLNKYKSSYVTMQELLDHFFP  100
            P +RIFTIN   E+  +L  L  YKSSY+++ EL+DH FP
Sbjct  189  PESRIFTINPKGELRHEL--LKTYKSSYLSLNELVDHMFP  226



Lambda      K        H        a         alpha
   0.309    0.130    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00002507

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462403 pfam08235, LNS2, LNS2 (Lipin/Ned1/Smp2). This domain i...  307     2e-106


>CDD:462403 pfam08235, LNS2, LNS2 (Lipin/Ned1/Smp2).  This domain is found 
in Saccharomyces cerevisiae protein SMP2, proteins with an 
N-terminal lipin domain (pfam04571). SMP2 (also known as PAH1) 
is involved in plasmid maintenance and respiration, and 
has been identified as a Mg2+-dependent phosphatidate phosphatase 
(EC:3.1.3.4) that contains a haloacid dehalogenase (HAD)-like 
domain. Lipin proteins are involved in adipose tissue 
development and insulin resistance.
Length=226

 Score = 307 bits (788),  Expect = 2e-106, Method: Composition-based stats.
 Identities = 101/159 (64%), Positives = 124/159 (78%), Gaps = 2/159 (1%)

Query  1    MIGRDWTHAGVAKLYTDIVNNGYNIMYLTSRSVGQADTTRTYLYGVCQDGYRLPKGPVIM  60
            MIG+DWTH GVAKLY+ I  NGY I+YL++R++GQAD TR YL  V QDGY+LP GPV++
Sbjct  70   MIGKDWTHPGVAKLYSKIKRNGYKILYLSARAIGQADLTREYLKNVTQDGYKLPDGPVLL  129

Query  61   SPDRTIAALRREIYLRKPEVFKMACLRDILGLFNGKENPFYAGFGNRLTDALSYRSVNIP  120
            SPDR  +AL RE+ LRKPEVFK+ACLRDI  LF    NPFYAGFGNR+TD +SYR+V IP
Sbjct  130  SPDRLFSALHREVILRKPEVFKIACLRDIKSLFPPDVNPFYAGFGNRITDVISYRAVGIP  189

Query  121  STRIFTINSNAEVSLDLLSLNKYKSSYVTMQELLDHFFP  159
             +RIFTIN   E+  +L  L  YKSSY+++ EL+DH FP
Sbjct  190  ESRIFTINPKGELRHEL--LKTYKSSYLSLNELVDHMFP  226



Lambda      K        H        a         alpha
   0.312    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00007792

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462403 pfam08235, LNS2, LNS2 (Lipin/Ned1/Smp2). This domain i...  173     1e-54


>CDD:462403 pfam08235, LNS2, LNS2 (Lipin/Ned1/Smp2).  This domain is found 
in Saccharomyces cerevisiae protein SMP2, proteins with an 
N-terminal lipin domain (pfam04571). SMP2 (also known as PAH1) 
is involved in plasmid maintenance and respiration, and 
has been identified as a Mg2+-dependent phosphatidate phosphatase 
(EC:3.1.3.4) that contains a haloacid dehalogenase (HAD)-like 
domain. Lipin proteins are involved in adipose tissue 
development and insulin resistance.
Length=226

 Score = 173 bits (441),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 69/159 (43%), Positives = 88/159 (55%), Gaps = 48/159 (30%)

Query  1    MIGRDWTHAGVAKLFTE-----------SAK-----------------------------  20
            MIG+DWTH GVAKL+++           SA+                             
Sbjct  70   MIGKDWTHPGVAKLYSKIKRNGYKILYLSARAIGQADLTREYLKNVTQDGYKLPDGPVLL  129

Query  21   -----MATDYQRV-LRKPEVFKMACLRDILGLFNGKENPFYAGFGNRLTDALSYRSVNIP  74
                  +  ++ V LRKPEVFK+ACLRDI  LF    NPFYAGFGNR+TD +SYR+V IP
Sbjct  130  SPDRLFSALHREVILRKPEVFKIACLRDIKSLFPPDVNPFYAGFGNRITDVISYRAVGIP  189

Query  75   STRIFTINSNAEVSLDLLSLNKYKSSYVTMQELLDHFFP  113
             +RIFTIN   E+  +L  L  YKSSY+++ EL+DH FP
Sbjct  190  ESRIFTINPKGELRHEL--LKTYKSSYLSLNELVDHMFP  226



Lambda      K        H        a         alpha
   0.310    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00002508

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462403 pfam08235, LNS2, LNS2 (Lipin/Ned1/Smp2). This domain i...  307     2e-106


>CDD:462403 pfam08235, LNS2, LNS2 (Lipin/Ned1/Smp2).  This domain is found 
in Saccharomyces cerevisiae protein SMP2, proteins with an 
N-terminal lipin domain (pfam04571). SMP2 (also known as PAH1) 
is involved in plasmid maintenance and respiration, and 
has been identified as a Mg2+-dependent phosphatidate phosphatase 
(EC:3.1.3.4) that contains a haloacid dehalogenase (HAD)-like 
domain. Lipin proteins are involved in adipose tissue 
development and insulin resistance.
Length=226

 Score = 307 bits (788),  Expect = 2e-106, Method: Composition-based stats.
 Identities = 101/159 (64%), Positives = 124/159 (78%), Gaps = 2/159 (1%)

Query  1    MIGRDWTHAGVAKLYTDIVNNGYNIMYLTSRSVGQADTTRTYLYGVCQDGYRLPKGPVIM  60
            MIG+DWTH GVAKLY+ I  NGY I+YL++R++GQAD TR YL  V QDGY+LP GPV++
Sbjct  70   MIGKDWTHPGVAKLYSKIKRNGYKILYLSARAIGQADLTREYLKNVTQDGYKLPDGPVLL  129

Query  61   SPDRTIAALRREIYLRKPEVFKMACLRDILGLFNGKENPFYAGFGNRLTDALSYRSVNIP  120
            SPDR  +AL RE+ LRKPEVFK+ACLRDI  LF    NPFYAGFGNR+TD +SYR+V IP
Sbjct  130  SPDRLFSALHREVILRKPEVFKIACLRDIKSLFPPDVNPFYAGFGNRITDVISYRAVGIP  189

Query  121  STRIFTINSNAEVSLDLLSLNKYKSSYVTMQELLDHFFP  159
             +RIFTIN   E+  +L  L  YKSSY+++ EL+DH FP
Sbjct  190  ESRIFTINPKGELRHEL--LKTYKSSYLSLNELVDHMFP  226



Lambda      K        H        a         alpha
   0.312    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00002509

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462403 pfam08235, LNS2, LNS2 (Lipin/Ned1/Smp2). This domain i...  307     2e-106


>CDD:462403 pfam08235, LNS2, LNS2 (Lipin/Ned1/Smp2).  This domain is found 
in Saccharomyces cerevisiae protein SMP2, proteins with an 
N-terminal lipin domain (pfam04571). SMP2 (also known as PAH1) 
is involved in plasmid maintenance and respiration, and 
has been identified as a Mg2+-dependent phosphatidate phosphatase 
(EC:3.1.3.4) that contains a haloacid dehalogenase (HAD)-like 
domain. Lipin proteins are involved in adipose tissue 
development and insulin resistance.
Length=226

 Score = 307 bits (788),  Expect = 2e-106, Method: Composition-based stats.
 Identities = 101/159 (64%), Positives = 124/159 (78%), Gaps = 2/159 (1%)

Query  1    MIGRDWTHAGVAKLYTDIVNNGYNIMYLTSRSVGQADTTRTYLYGVCQDGYRLPKGPVIM  60
            MIG+DWTH GVAKLY+ I  NGY I+YL++R++GQAD TR YL  V QDGY+LP GPV++
Sbjct  70   MIGKDWTHPGVAKLYSKIKRNGYKILYLSARAIGQADLTREYLKNVTQDGYKLPDGPVLL  129

Query  61   SPDRTIAALRREIYLRKPEVFKMACLRDILGLFNGKENPFYAGFGNRLTDALSYRSVNIP  120
            SPDR  +AL RE+ LRKPEVFK+ACLRDI  LF    NPFYAGFGNR+TD +SYR+V IP
Sbjct  130  SPDRLFSALHREVILRKPEVFKIACLRDIKSLFPPDVNPFYAGFGNRITDVISYRAVGIP  189

Query  121  STRIFTINSNAEVSLDLLSLNKYKSSYVTMQELLDHFFP  159
             +RIFTIN   E+  +L  L  YKSSY+++ EL+DH FP
Sbjct  190  ESRIFTINPKGELRHEL--LKTYKSSYLSLNELVDHMFP  226



Lambda      K        H        a         alpha
   0.312    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00002510

Length=1092


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1389256810


Query= TCONS_00002511

Length=615


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.127    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0733    0.140     1.90     42.6     43.6 

Effective search space used: 781585844


Query= TCONS_00007793

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase. The Thg1...  252     4e-85
CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain. Thg1 polymer...  233     3e-78


>CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase.  The Thg1 protein 
from Saccharomyces cerevisiae is responsible for adding a 
GMP residue to the 5' end of tRNA His. The catalytic domain 
Thg1 contains a RRM (ferredoxin) fold palm domain, just like 
the viral RNA-dependent RNA polymerases, reverse transcriptases, 
family A and B DNA polymerases, adenylyl cyclases, diguanylate 
cyclases (GGDEF domain) and the predicted polymerase 
of the CRISPR system. Thg1 possesses an active site with 
three acidic residues that chelate Mg++ cations. Thg1 catalyzes 
polymerization similar to the 5'-3' polymerases.
Length=130

 Score = 252 bits (645),  Expect = 4e-85, Method: Composition-based stats.
 Identities = 88/132 (67%), Positives = 102/132 (77%), Gaps = 2/132 (2%)

Query  79   YEYVKSFEQPDVLLPNTWIVVRIDGRGFHKLSDRYGFIKPNDRRALDLMNAAAVEVMKEL  138
            YEYVKSFEQ D LLPNTWIVVRIDGRGFHK S ++GF KPND RALDLMN AA +VM+E 
Sbjct  1    YEYVKSFEQDDKLLPNTWIVVRIDGRGFHKFSKKHGFEKPNDERALDLMNEAAKDVMEEF  60

Query  139  PDLCIAYGVSDEYSFVFHPSCQLFERRSAKLVTTIVSTFTAHYIYHWGTYFPSTPLQPPY  198
            PD+ +AYG SDEYSFVF  S  LF RR +KLV+ + S F++ Y++ W  +FP  PL   Y
Sbjct  61   PDIVLAYGQSDEYSFVFRKSTTLFNRRVSKLVSLVASLFSSSYVFLWSKFFPDKPLL--Y  118

Query  199  LPSFDGRAVLYP  210
             PSFDGRAVLYP
Sbjct  119  PPSFDGRAVLYP  130


>CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain.  Thg1 polymerases contain 
an additional region of conservation C-terminal to the 
core palm domain that comprise of 5 helices and two strands. 
This region has several well-conserved charged residues including 
a basic residue found towards the end of the first 
helix of this unit might contribute to the Thg1-specific active 
site. This C-terminal module of Thg1 is predicted to form 
a helical bundle that functions equivalently to the fingers 
of the other nucleic acid polymerases, probably in interacting 
with the template HtRNA.
Length=116

 Score = 233 bits (598),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 93/131 (71%), Gaps = 15/131 (11%)

Query  213  RILRDYMSWRQVDCHINNLYNTTFWTMVQKGGMSNTDAERELHGTVSSDKNEILFKRFGI  272
            + LRDY+SWRQVDCHINNLYNTTFW +VQKGG++ T+AE  L GTVS+DKNEILF  FGI
Sbjct  1    KNLRDYLSWRQVDCHINNLYNTTFWALVQKGGLTPTEAEERLKGTVSADKNEILFSEFGI  60

Query  273  NYNNEDEMFKKGSVVYRQYQLEDPKPESKSRHGDDDEAPMDESKISRAQQDKLRKLRRKA  332
            NYNNE E+F+KGSV+ R+               + +E     +++S+ Q++K  K R+KA
Sbjct  61   NYNNEPEIFRKGSVLVRE---------------EVEETVTKPTELSKTQKEKEEKKRKKA  105

Query  333  QVVVDHVDIIK  343
            ++VV H DII 
Sbjct  106  KIVVLHCDIIG  116



Lambda      K        H        a         alpha
   0.321    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00007794

Length=907


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1165637368


Query= TCONS_00002513

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase. The Thg1...  252     4e-85
CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain. Thg1 polymer...  233     3e-78


>CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase.  The Thg1 protein 
from Saccharomyces cerevisiae is responsible for adding a 
GMP residue to the 5' end of tRNA His. The catalytic domain 
Thg1 contains a RRM (ferredoxin) fold palm domain, just like 
the viral RNA-dependent RNA polymerases, reverse transcriptases, 
family A and B DNA polymerases, adenylyl cyclases, diguanylate 
cyclases (GGDEF domain) and the predicted polymerase 
of the CRISPR system. Thg1 possesses an active site with 
three acidic residues that chelate Mg++ cations. Thg1 catalyzes 
polymerization similar to the 5'-3' polymerases.
Length=130

 Score = 252 bits (645),  Expect = 4e-85, Method: Composition-based stats.
 Identities = 88/132 (67%), Positives = 102/132 (77%), Gaps = 2/132 (2%)

Query  79   YEYVKSFEQPDVLLPNTWIVVRIDGRGFHKLSDRYGFIKPNDRRALDLMNAAAVEVMKEL  138
            YEYVKSFEQ D LLPNTWIVVRIDGRGFHK S ++GF KPND RALDLMN AA +VM+E 
Sbjct  1    YEYVKSFEQDDKLLPNTWIVVRIDGRGFHKFSKKHGFEKPNDERALDLMNEAAKDVMEEF  60

Query  139  PDLCIAYGVSDEYSFVFHPSCQLFERRSAKLVTTIVSTFTAHYIYHWGTYFPSTPLQPPY  198
            PD+ +AYG SDEYSFVF  S  LF RR +KLV+ + S F++ Y++ W  +FP  PL   Y
Sbjct  61   PDIVLAYGQSDEYSFVFRKSTTLFNRRVSKLVSLVASLFSSSYVFLWSKFFPDKPLL--Y  118

Query  199  LPSFDGRAVLYP  210
             PSFDGRAVLYP
Sbjct  119  PPSFDGRAVLYP  130


>CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain.  Thg1 polymerases contain 
an additional region of conservation C-terminal to the 
core palm domain that comprise of 5 helices and two strands. 
This region has several well-conserved charged residues including 
a basic residue found towards the end of the first 
helix of this unit might contribute to the Thg1-specific active 
site. This C-terminal module of Thg1 is predicted to form 
a helical bundle that functions equivalently to the fingers 
of the other nucleic acid polymerases, probably in interacting 
with the template HtRNA.
Length=116

 Score = 233 bits (598),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 93/131 (71%), Gaps = 15/131 (11%)

Query  213  RILRDYMSWRQVDCHINNLYNTTFWTMVQKGGMSNTDAERELHGTVSSDKNEILFKRFGI  272
            + LRDY+SWRQVDCHINNLYNTTFW +VQKGG++ T+AE  L GTVS+DKNEILF  FGI
Sbjct  1    KNLRDYLSWRQVDCHINNLYNTTFWALVQKGGLTPTEAEERLKGTVSADKNEILFSEFGI  60

Query  273  NYNNEDEMFKKGSVVYRQYQLEDPKPESKSRHGDDDEAPMDESKISRAQQDKLRKLRRKA  332
            NYNNE E+F+KGSV+ R+               + +E     +++S+ Q++K  K R+KA
Sbjct  61   NYNNEPEIFRKGSVLVRE---------------EVEETVTKPTELSKTQKEKEEKKRKKA  105

Query  333  QVVVDHVDIIK  343
            ++VV H DII 
Sbjct  106  KIVVLHCDIIG  116



Lambda      K        H        a         alpha
   0.321    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00002512

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase. The Thg1...  253     2e-85
CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain. Thg1 polymer...  227     2e-75


>CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase.  The Thg1 protein 
from Saccharomyces cerevisiae is responsible for adding a 
GMP residue to the 5' end of tRNA His. The catalytic domain 
Thg1 contains a RRM (ferredoxin) fold palm domain, just like 
the viral RNA-dependent RNA polymerases, reverse transcriptases, 
family A and B DNA polymerases, adenylyl cyclases, diguanylate 
cyclases (GGDEF domain) and the predicted polymerase 
of the CRISPR system. Thg1 possesses an active site with 
three acidic residues that chelate Mg++ cations. Thg1 catalyzes 
polymerization similar to the 5'-3' polymerases.
Length=130

 Score = 253 bits (649),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 88/132 (67%), Positives = 102/132 (77%), Gaps = 2/132 (2%)

Query  79   YEYVKSFEQPDVLLPNTWIVVRIDGRGFHKLSDRYGFIKPNDRRALDLMNAAAVEVMKEL  138
            YEYVKSFEQ D LLPNTWIVVRIDGRGFHK S ++GF KPND RALDLMN AA +VM+E 
Sbjct  1    YEYVKSFEQDDKLLPNTWIVVRIDGRGFHKFSKKHGFEKPNDERALDLMNEAAKDVMEEF  60

Query  139  PDLCIAYGVSDEYSFVFHPSCQLFERRSAKLVTTIVSTFTAHYIYHWGTYFPSTPLQPPY  198
            PD+ +AYG SDEYSFVF  S  LF RR +KLV+ + S F++ Y++ W  +FP  PL   Y
Sbjct  61   PDIVLAYGQSDEYSFVFRKSTTLFNRRVSKLVSLVASLFSSSYVFLWSKFFPDKPLL--Y  118

Query  199  LPSFDGRAVLYP  210
             PSFDGRAVLYP
Sbjct  119  PPSFDGRAVLYP  130


>CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain.  Thg1 polymerases contain 
an additional region of conservation C-terminal to the 
core palm domain that comprise of 5 helices and two strands. 
This region has several well-conserved charged residues including 
a basic residue found towards the end of the first 
helix of this unit might contribute to the Thg1-specific active 
site. This C-terminal module of Thg1 is predicted to form 
a helical bundle that functions equivalently to the fingers 
of the other nucleic acid polymerases, probably in interacting 
with the template HtRNA.
Length=116

 Score = 227 bits (581),  Expect = 2e-75, Method: Composition-based stats.
 Identities = 71/148 (48%), Positives = 93/148 (63%), Gaps = 32/148 (22%)

Query  213  RILRDYMSWRQVDCHINNLYNTTFWTMVQKGGMSNTDAERELHGTVSSDKNEILFKRFGI  272
            + LRDY+SWRQVDCHINNLYNTTFW +VQKGG++ T+AE  L GTVS+DKNEILF  FGI
Sbjct  1    KNLRDYLSWRQVDCHINNLYNTTFWALVQKGGLTPTEAEERLKGTVSADKNEILFSEFGI  60

Query  273  NYNNEDEMFKKGSVVYRQVGQQGCLYDRRLTWILQYQLEDPKPESKSRHGDDDEAPMDES  332
            NYNNE E+F+KGSV+ R+                                + +E     +
Sbjct  61   NYNNEPEIFRKGSVLVRE--------------------------------EVEETVTKPT  88

Query  333  KISRAQQDKLRKLRRKAQVVVDHVDIIK  360
            ++S+ Q++K  K R+KA++VV H DII 
Sbjct  89   ELSKTQKEKEEKKRKKAKIVVLHCDIIG  116



Lambda      K        H        a         alpha
   0.322    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00007795

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase. The Thg1...  249     6e-85
CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain. Thg1 polymer...  199     1e-65


>CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase.  The Thg1 protein 
from Saccharomyces cerevisiae is responsible for adding a 
GMP residue to the 5' end of tRNA His. The catalytic domain 
Thg1 contains a RRM (ferredoxin) fold palm domain, just like 
the viral RNA-dependent RNA polymerases, reverse transcriptases, 
family A and B DNA polymerases, adenylyl cyclases, diguanylate 
cyclases (GGDEF domain) and the predicted polymerase 
of the CRISPR system. Thg1 possesses an active site with 
three acidic residues that chelate Mg++ cations. Thg1 catalyzes 
polymerization similar to the 5'-3' polymerases.
Length=130

 Score = 249 bits (638),  Expect = 6e-85, Method: Composition-based stats.
 Identities = 88/132 (67%), Positives = 102/132 (77%), Gaps = 2/132 (2%)

Query  72   YEYVKSFEQPDVLLPNTWIVVRIDGRGFHKLSDRYGFIKPNDRRALDLMNAAAVEVMKEL  131
            YEYVKSFEQ D LLPNTWIVVRIDGRGFHK S ++GF KPND RALDLMN AA +VM+E 
Sbjct  1    YEYVKSFEQDDKLLPNTWIVVRIDGRGFHKFSKKHGFEKPNDERALDLMNEAAKDVMEEF  60

Query  132  PDLCIAYGVSDEYSFVFHPSCQLFERRSAKLVTTIVSTFTAHYIYHWGTYFPSTPLQPPY  191
            PD+ +AYG SDEYSFVF  S  LF RR +KLV+ + S F++ Y++ W  +FP  PL   Y
Sbjct  61   PDIVLAYGQSDEYSFVFRKSTTLFNRRVSKLVSLVASLFSSSYVFLWSKFFPDKPLL--Y  118

Query  192  LPSFDGRAVLYP  203
             PSFDGRAVLYP
Sbjct  119  PPSFDGRAVLYP  130


>CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain.  Thg1 polymerases contain 
an additional region of conservation C-terminal to the 
core palm domain that comprise of 5 helices and two strands. 
This region has several well-conserved charged residues including 
a basic residue found towards the end of the first 
helix of this unit might contribute to the Thg1-specific active 
site. This C-terminal module of Thg1 is predicted to form 
a helical bundle that functions equivalently to the fingers 
of the other nucleic acid polymerases, probably in interacting 
with the template HtRNA.
Length=116

 Score = 199 bits (509),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 62/92 (67%), Positives = 74/92 (80%), Gaps = 1/92 (1%)

Query  206  RILRDYMSWRQVDCHINNLYNTTFWTMVQKGGMSNTDAERELHGTVSSDKNEILFKRFGI  265
            + LRDY+SWRQVDCHINNLYNTTFW +VQKGG++ T+AE  L GTVS+DKNEILF  FGI
Sbjct  1    KNLRDYLSWRQVDCHINNLYNTTFWALVQKGGLTPTEAEERLKGTVSADKNEILFSEFGI  60

Query  266  NYNNEDEMFKKGSVVYRQ-VELEDPKPESKSR  296
            NYNNE E+F+KGSV+ R+ VE    KP   S+
Sbjct  61   NYNNEPEIFRKGSVLVREEVEETVTKPTELSK  92



Lambda      K        H        a         alpha
   0.322    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00002514

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain. Thg1 polymer...  227     9e-76
CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase. The Thg1...  169     7e-53


>CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain.  Thg1 polymerases contain 
an additional region of conservation C-terminal to the 
core palm domain that comprise of 5 helices and two strands. 
This region has several well-conserved charged residues including 
a basic residue found towards the end of the first 
helix of this unit might contribute to the Thg1-specific active 
site. This C-terminal module of Thg1 is predicted to form 
a helical bundle that functions equivalently to the fingers 
of the other nucleic acid polymerases, probably in interacting 
with the template HtRNA.
Length=116

 Score = 227 bits (582),  Expect = 9e-76, Method: Composition-based stats.
 Identities = 71/148 (48%), Positives = 93/148 (63%), Gaps = 32/148 (22%)

Query  204  RILRDYMSWRQVDCHINNLYNTTFWTMVQKGGMSNTDAERELHGTVSSDKNEILFKRFGI  263
            + LRDY+SWRQVDCHINNLYNTTFW +VQKGG++ T+AE  L GTVS+DKNEILF  FGI
Sbjct  1    KNLRDYLSWRQVDCHINNLYNTTFWALVQKGGLTPTEAEERLKGTVSADKNEILFSEFGI  60

Query  264  NYNNEDEMFKKGSVVYRQVGQQGCLYDRRLTWILQYQLEDPKPESKSRHGDDDEAPMDES  323
            NYNNE E+F+KGSV+ R+                                + +E     +
Sbjct  61   NYNNEPEIFRKGSVLVRE--------------------------------EVEETVTKPT  88

Query  324  KISRAQQDKLRKLRRKAQVVVDHVDIIK  351
            ++S+ Q++K  K R+KA++VV H DII 
Sbjct  89   ELSKTQKEKEEKKRKKAKIVVLHCDIIG  116


>CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase.  The Thg1 protein 
from Saccharomyces cerevisiae is responsible for adding a 
GMP residue to the 5' end of tRNA His. The catalytic domain 
Thg1 contains a RRM (ferredoxin) fold palm domain, just like 
the viral RNA-dependent RNA polymerases, reverse transcriptases, 
family A and B DNA polymerases, adenylyl cyclases, diguanylate 
cyclases (GGDEF domain) and the predicted polymerase 
of the CRISPR system. Thg1 possesses an active site with 
three acidic residues that chelate Mg++ cations. Thg1 catalyzes 
polymerization similar to the 5'-3' polymerases.
Length=130

 Score = 169 bits (432),  Expect = 7e-53, Method: Composition-based stats.
 Identities = 72/143 (50%), Positives = 82/143 (57%), Gaps = 26/143 (18%)

Query  72   YEYVKSFEQPDVLLPNTWIVVRIDGRGFHKLSDRYGFIKPNDRRALDLMNAAAVEVMKEL  131
            YEYVKSFEQ D LLPNTWIVVRIDGRGFHK S ++GF KPND RALDLMN AA +VM+E 
Sbjct  1    YEYVKSFEQDDKLLPNTWIVVRIDGRGFHKFSKKHGFEKPNDERALDLMNEAAKDVMEEF  60

Query  132  PDLCIAYGVSDEYRSLRFSPQ-----------LSVV--RATQRVSHPQPERASLPRLDLL  178
            PD+ +AYG SDEY S  F              +S+V    +              +    
Sbjct  61   PDIVLAYGQSDEY-SFVFRKSTTLFNRRVSKLVSLVASLFSSSYVF------LWSK----  109

Query  179  TLQTLTLGPPYLPSFDGRAVLYP  201
                      Y PSFDGRAVLYP
Sbjct  110  --FFPDKPLLYPPSFDGRAVLYP  130



Lambda      K        H        a         alpha
   0.321    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 446726320


Query= TCONS_00002516

Length=217
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain. Thg1 polymer...  232     1e-79
CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase. The Thg1...  100     1e-27


>CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain.  Thg1 polymerases contain 
an additional region of conservation C-terminal to the 
core palm domain that comprise of 5 helices and two strands. 
This region has several well-conserved charged residues including 
a basic residue found towards the end of the first 
helix of this unit might contribute to the Thg1-specific active 
site. This C-terminal module of Thg1 is predicted to form 
a helical bundle that functions equivalently to the fingers 
of the other nucleic acid polymerases, probably in interacting 
with the template HtRNA.
Length=116

 Score = 232 bits (593),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 93/131 (71%), Gaps = 15/131 (11%)

Query  66   RILRDYMSWRQVDCHINNLYNTTFWTMVQKGGMSNTDAERELHGTVSSDKNEILFKRFGI  125
            + LRDY+SWRQVDCHINNLYNTTFW +VQKGG++ T+AE  L GTVS+DKNEILF  FGI
Sbjct  1    KNLRDYLSWRQVDCHINNLYNTTFWALVQKGGLTPTEAEERLKGTVSADKNEILFSEFGI  60

Query  126  NYNNEDEMFKKGSVVYRQYQLEDPKPESKSRHGDDDEAPMDESKISRAQQDKLRKLRRKA  185
            NYNNE E+F+KGSV+ R+               + +E     +++S+ Q++K  K R+KA
Sbjct  61   NYNNEPEIFRKGSVLVRE---------------EVEETVTKPTELSKTQKEKEEKKRKKA  105

Query  186  QVVVDHVDIIK  196
            ++VV H DII 
Sbjct  106  KIVVLHCDIIG  116


>CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase.  The Thg1 protein 
from Saccharomyces cerevisiae is responsible for adding a 
GMP residue to the 5' end of tRNA His. The catalytic domain 
Thg1 contains a RRM (ferredoxin) fold palm domain, just like 
the viral RNA-dependent RNA polymerases, reverse transcriptases, 
family A and B DNA polymerases, adenylyl cyclases, diguanylate 
cyclases (GGDEF domain) and the predicted polymerase 
of the CRISPR system. Thg1 possesses an active site with 
three acidic residues that chelate Mg++ cations. Thg1 catalyzes 
polymerization similar to the 5'-3' polymerases.
Length=130

 Score = 100 bits (251),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 2/58 (3%)

Query  6    FVFHPSCQLFERRSAKLVTTIVSTFTAHYIYHWGTYFPSTPLQPPYLPSFDGRAVLYP  63
            FVF  S  LF RR +KLV+ + S F++ Y++ W  +FP  PL   Y PSFDGRAVLYP
Sbjct  75   FVFRKSTTLFNRRVSKLVSLVASLFSSSYVFLWSKFFPDKPLL--YPPSFDGRAVLYP  130



Lambda      K        H        a         alpha
   0.319    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00007796

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain. Thg1 polymer...  233     5e-80
CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase. The Thg1...  150     6e-47


>CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain.  Thg1 polymerases contain 
an additional region of conservation C-terminal to the 
core palm domain that comprise of 5 helices and two strands. 
This region has several well-conserved charged residues including 
a basic residue found towards the end of the first 
helix of this unit might contribute to the Thg1-specific active 
site. This C-terminal module of Thg1 is predicted to form 
a helical bundle that functions equivalently to the fingers 
of the other nucleic acid polymerases, probably in interacting 
with the template HtRNA.
Length=116

 Score = 233 bits (598),  Expect = 5e-80, Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 93/131 (71%), Gaps = 15/131 (11%)

Query  87   RILRDYMSWRQVDCHINNLYNTTFWTMVQKGGMSNTDAERELHGTVSSDKNEILFKRFGI  146
            + LRDY+SWRQVDCHINNLYNTTFW +VQKGG++ T+AE  L GTVS+DKNEILF  FGI
Sbjct  1    KNLRDYLSWRQVDCHINNLYNTTFWALVQKGGLTPTEAEERLKGTVSADKNEILFSEFGI  60

Query  147  NYNNEDEMFKKGSVVYRQYQLEDPKPESKSRHGDDDEAPMDESKISRAQQDKLRKLRRKA  206
            NYNNE E+F+KGSV+ R+               + +E     +++S+ Q++K  K R+KA
Sbjct  61   NYNNEPEIFRKGSVLVRE---------------EVEETVTKPTELSKTQKEKEEKKRKKA  105

Query  207  QVVVDHVDIIK  217
            ++VV H DII 
Sbjct  106  KIVVLHCDIIG  116


>CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase.  The Thg1 protein 
from Saccharomyces cerevisiae is responsible for adding a 
GMP residue to the 5' end of tRNA His. The catalytic domain 
Thg1 contains a RRM (ferredoxin) fold palm domain, just like 
the viral RNA-dependent RNA polymerases, reverse transcriptases, 
family A and B DNA polymerases, adenylyl cyclases, diguanylate 
cyclases (GGDEF domain) and the predicted polymerase 
of the CRISPR system. Thg1 possesses an active site with 
three acidic residues that chelate Mg++ cations. Thg1 catalyzes 
polymerization similar to the 5'-3' polymerases.
Length=130

 Score = 150 bits (381),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 48/84 (57%), Positives = 60/84 (71%), Gaps = 2/84 (2%)

Query  1    MNAAAVEVMKELPDLCIAYGVSDEYSFVFHPSCQLFERRSAKLVTTIVSTFTAHYIYHWG  60
            MN AA +VM+E PD+ +AYG SDEYSFVF  S  LF RR +KLV+ + S F++ Y++ W 
Sbjct  49   MNEAAKDVMEEFPDIVLAYGQSDEYSFVFRKSTTLFNRRVSKLVSLVASLFSSSYVFLWS  108

Query  61   TYFPSTPLQPPYLPSFDGRAVLYP  84
             +FP  PL   Y PSFDGRAVLYP
Sbjct  109  KFFPDKPLL--YPPSFDGRAVLYP  130



Lambda      K        H        a         alpha
   0.319    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00002515

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase. The Thg1...  252     2e-85
CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain. Thg1 polymer...  227     2e-75


>CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase.  The Thg1 protein 
from Saccharomyces cerevisiae is responsible for adding a 
GMP residue to the 5' end of tRNA His. The catalytic domain 
Thg1 contains a RRM (ferredoxin) fold palm domain, just like 
the viral RNA-dependent RNA polymerases, reverse transcriptases, 
family A and B DNA polymerases, adenylyl cyclases, diguanylate 
cyclases (GGDEF domain) and the predicted polymerase 
of the CRISPR system. Thg1 possesses an active site with 
three acidic residues that chelate Mg++ cations. Thg1 catalyzes 
polymerization similar to the 5'-3' polymerases.
Length=130

 Score = 252 bits (647),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 88/132 (67%), Positives = 102/132 (77%), Gaps = 2/132 (2%)

Query  72   YEYVKSFEQPDVLLPNTWIVVRIDGRGFHKLSDRYGFIKPNDRRALDLMNAAAVEVMKEL  131
            YEYVKSFEQ D LLPNTWIVVRIDGRGFHK S ++GF KPND RALDLMN AA +VM+E 
Sbjct  1    YEYVKSFEQDDKLLPNTWIVVRIDGRGFHKFSKKHGFEKPNDERALDLMNEAAKDVMEEF  60

Query  132  PDLCIAYGVSDEYSFVFHPSCQLFERRSAKLVTTIVSTFTAHYIYHWGTYFPSTPLQPPY  191
            PD+ +AYG SDEYSFVF  S  LF RR +KLV+ + S F++ Y++ W  +FP  PL   Y
Sbjct  61   PDIVLAYGQSDEYSFVFRKSTTLFNRRVSKLVSLVASLFSSSYVFLWSKFFPDKPLL--Y  118

Query  192  LPSFDGRAVLYP  203
             PSFDGRAVLYP
Sbjct  119  PPSFDGRAVLYP  130


>CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain.  Thg1 polymerases contain 
an additional region of conservation C-terminal to the 
core palm domain that comprise of 5 helices and two strands. 
This region has several well-conserved charged residues including 
a basic residue found towards the end of the first 
helix of this unit might contribute to the Thg1-specific active 
site. This C-terminal module of Thg1 is predicted to form 
a helical bundle that functions equivalently to the fingers 
of the other nucleic acid polymerases, probably in interacting 
with the template HtRNA.
Length=116

 Score = 227 bits (581),  Expect = 2e-75, Method: Composition-based stats.
 Identities = 71/148 (48%), Positives = 93/148 (63%), Gaps = 32/148 (22%)

Query  206  RILRDYMSWRQVDCHINNLYNTTFWTMVQKGGMSNTDAERELHGTVSSDKNEILFKRFGI  265
            + LRDY+SWRQVDCHINNLYNTTFW +VQKGG++ T+AE  L GTVS+DKNEILF  FGI
Sbjct  1    KNLRDYLSWRQVDCHINNLYNTTFWALVQKGGLTPTEAEERLKGTVSADKNEILFSEFGI  60

Query  266  NYNNEDEMFKKGSVVYRQVGQQGCLYDRRLTWILQYQLEDPKPESKSRHGDDDEAPMDES  325
            NYNNE E+F+KGSV+ R+                                + +E     +
Sbjct  61   NYNNEPEIFRKGSVLVRE--------------------------------EVEETVTKPT  88

Query  326  KISRAQQDKLRKLRRKAQVVVDHVDIIK  353
            ++S+ Q++K  K R+KA++VV H DII 
Sbjct  89   ELSKTQKEKEEKKRKKAKIVVLHCDIIG  116



Lambda      K        H        a         alpha
   0.322    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00002517

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase. The Thg1...  251     5e-85
CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain. Thg1 polymer...  233     2e-78


>CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase.  The Thg1 protein 
from Saccharomyces cerevisiae is responsible for adding a 
GMP residue to the 5' end of tRNA His. The catalytic domain 
Thg1 contains a RRM (ferredoxin) fold palm domain, just like 
the viral RNA-dependent RNA polymerases, reverse transcriptases, 
family A and B DNA polymerases, adenylyl cyclases, diguanylate 
cyclases (GGDEF domain) and the predicted polymerase 
of the CRISPR system. Thg1 possesses an active site with 
three acidic residues that chelate Mg++ cations. Thg1 catalyzes 
polymerization similar to the 5'-3' polymerases.
Length=130

 Score = 251 bits (644),  Expect = 5e-85, Method: Composition-based stats.
 Identities = 88/132 (67%), Positives = 102/132 (77%), Gaps = 2/132 (2%)

Query  72   YEYVKSFEQPDVLLPNTWIVVRIDGRGFHKLSDRYGFIKPNDRRALDLMNAAAVEVMKEL  131
            YEYVKSFEQ D LLPNTWIVVRIDGRGFHK S ++GF KPND RALDLMN AA +VM+E 
Sbjct  1    YEYVKSFEQDDKLLPNTWIVVRIDGRGFHKFSKKHGFEKPNDERALDLMNEAAKDVMEEF  60

Query  132  PDLCIAYGVSDEYSFVFHPSCQLFERRSAKLVTTIVSTFTAHYIYHWGTYFPSTPLQPPY  191
            PD+ +AYG SDEYSFVF  S  LF RR +KLV+ + S F++ Y++ W  +FP  PL   Y
Sbjct  61   PDIVLAYGQSDEYSFVFRKSTTLFNRRVSKLVSLVASLFSSSYVFLWSKFFPDKPLL--Y  118

Query  192  LPSFDGRAVLYP  203
             PSFDGRAVLYP
Sbjct  119  PPSFDGRAVLYP  130


>CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain.  Thg1 polymerases contain 
an additional region of conservation C-terminal to the 
core palm domain that comprise of 5 helices and two strands. 
This region has several well-conserved charged residues including 
a basic residue found towards the end of the first 
helix of this unit might contribute to the Thg1-specific active 
site. This C-terminal module of Thg1 is predicted to form 
a helical bundle that functions equivalently to the fingers 
of the other nucleic acid polymerases, probably in interacting 
with the template HtRNA.
Length=116

 Score = 233 bits (598),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 93/131 (71%), Gaps = 15/131 (11%)

Query  206  RILRDYMSWRQVDCHINNLYNTTFWTMVQKGGMSNTDAERELHGTVSSDKNEILFKRFGI  265
            + LRDY+SWRQVDCHINNLYNTTFW +VQKGG++ T+AE  L GTVS+DKNEILF  FGI
Sbjct  1    KNLRDYLSWRQVDCHINNLYNTTFWALVQKGGLTPTEAEERLKGTVSADKNEILFSEFGI  60

Query  266  NYNNEDEMFKKGSVVYRQYQLEDPKPESKSRHGDDDEAPMDESKISRAQQDKLRKLRRKA  325
            NYNNE E+F+KGSV+ R+               + +E     +++S+ Q++K  K R+KA
Sbjct  61   NYNNEPEIFRKGSVLVRE---------------EVEETVTKPTELSKTQKEKEEKKRKKA  105

Query  326  QVVVDHVDIIK  336
            ++VV H DII 
Sbjct  106  KIVVLHCDIIG  116



Lambda      K        H        a         alpha
   0.321    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00002518

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain. Thg1 polymer...  233     5e-80
CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase. The Thg1...  150     6e-47


>CDD:464167 pfam14413, Thg1C, Thg1 C terminal domain.  Thg1 polymerases contain 
an additional region of conservation C-terminal to the 
core palm domain that comprise of 5 helices and two strands. 
This region has several well-conserved charged residues including 
a basic residue found towards the end of the first 
helix of this unit might contribute to the Thg1-specific active 
site. This C-terminal module of Thg1 is predicted to form 
a helical bundle that functions equivalently to the fingers 
of the other nucleic acid polymerases, probably in interacting 
with the template HtRNA.
Length=116

 Score = 233 bits (598),  Expect = 5e-80, Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 93/131 (71%), Gaps = 15/131 (11%)

Query  87   RILRDYMSWRQVDCHINNLYNTTFWTMVQKGGMSNTDAERELHGTVSSDKNEILFKRFGI  146
            + LRDY+SWRQVDCHINNLYNTTFW +VQKGG++ T+AE  L GTVS+DKNEILF  FGI
Sbjct  1    KNLRDYLSWRQVDCHINNLYNTTFWALVQKGGLTPTEAEERLKGTVSADKNEILFSEFGI  60

Query  147  NYNNEDEMFKKGSVVYRQYQLEDPKPESKSRHGDDDEAPMDESKISRAQQDKLRKLRRKA  206
            NYNNE E+F+KGSV+ R+               + +E     +++S+ Q++K  K R+KA
Sbjct  61   NYNNEPEIFRKGSVLVRE---------------EVEETVTKPTELSKTQKEKEEKKRKKA  105

Query  207  QVVVDHVDIIK  217
            ++VV H DII 
Sbjct  106  KIVVLHCDIIG  116


>CDD:461314 pfam04446, Thg1, tRNAHis guanylyltransferase.  The Thg1 protein 
from Saccharomyces cerevisiae is responsible for adding a 
GMP residue to the 5' end of tRNA His. The catalytic domain 
Thg1 contains a RRM (ferredoxin) fold palm domain, just like 
the viral RNA-dependent RNA polymerases, reverse transcriptases, 
family A and B DNA polymerases, adenylyl cyclases, diguanylate 
cyclases (GGDEF domain) and the predicted polymerase 
of the CRISPR system. Thg1 possesses an active site with 
three acidic residues that chelate Mg++ cations. Thg1 catalyzes 
polymerization similar to the 5'-3' polymerases.
Length=130

 Score = 150 bits (381),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 48/84 (57%), Positives = 60/84 (71%), Gaps = 2/84 (2%)

Query  1    MNAAAVEVMKELPDLCIAYGVSDEYSFVFHPSCQLFERRSAKLVTTIVSTFTAHYIYHWG  60
            MN AA +VM+E PD+ +AYG SDEYSFVF  S  LF RR +KLV+ + S F++ Y++ W 
Sbjct  49   MNEAAKDVMEEFPDIVLAYGQSDEYSFVFRKSTTLFNRRVSKLVSLVASLFSSSYVFLWS  108

Query  61   TYFPSTPLQPPYLPSFDGRAVLYP  84
             +FP  PL   Y PSFDGRAVLYP
Sbjct  109  KFFPDKPLL--YPPSFDGRAVLYP  130



Lambda      K        H        a         alpha
   0.319    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00007797

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00002521

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  71.7    2e-15
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  56.8    6e-11


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 71.7 bits (176),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 41/160 (26%), Positives = 62/160 (39%), Gaps = 22/160 (14%)

Query  131  APHPTNGRFLDLGCGTGIWAIDVANKYPEAFVVGVDLAPIQPPNHPRNCDFYAPFDFESL  190
               P+ GR LD GCGTGI+   +  +     V GVD +PI           +  FD +  
Sbjct  18   PKLPSPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAI-ERALLNVRFDQFDEQEA  74

Query  191  WALGEDSWDLIHMQMGSGSVASWPNLYRRIYSHLRPGAWFEQVEIDFEPRCDDRSLEGLA  250
                   +D+I  +     V   P L R+I + L+PG     +     P   D +     
Sbjct  75   AVP-AGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLL-LS---TPLASDEADR--L  127

Query  251  IRQWYQLLKQATEETMRPVAHNSRETIRNL----QEAGFT  286
            + +W  L  +          H S  + R+L    +EAGF 
Sbjct  128  LLEWPYLRPRNG--------HISLFSARSLKRLLEEAGFE  159


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 56.8 bits (138),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 29/97 (30%), Positives = 38/97 (39%), Gaps = 12/97 (12%)

Query  140  LDLGCGTGIWAIDVANKYPEAFVVGVDLAPIQP-------PNHPRNCDFYAPFDFESLWA  192
            LDLGCGTG   + +A +   A V GVDL+P               N +F    D E L  
Sbjct  2    LDLGCGTGRLTLALARRG-GARVTGVDLSPEMLERARERAAEAGLNVEFVQ-GDAEDL-P  58

Query  193  LGEDSWDLIHMQMGSG--SVASWPNLYRRIYSHLRPG  227
              + S+DL+                  R I   L+PG
Sbjct  59   FPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPG  95



Lambda      K        H        a         alpha
   0.320    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00007798

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  71.3    2e-15
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  56.8    6e-11


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 71.3 bits (175),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 41/160 (26%), Positives = 62/160 (39%), Gaps = 22/160 (14%)

Query  119  APHPTNGRFLDLGCGTGIWAIDVANKYPEAFVVGVDLAPIQPPNHPRNCDFYAPFDFESL  178
               P+ GR LD GCGTGI+   +  +     V GVD +PI           +  FD +  
Sbjct  18   PKLPSPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAI-ERALLNVRFDQFDEQEA  74

Query  179  WALGEDSWDLIHMQMGSGSVASWPNLYRRIYSHLRPGAWFEQVEIDFEPRCDDRSLEGLA  238
                   +D+I  +     V   P L R+I + L+PG     +     P   D +     
Sbjct  75   AVP-AGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLL-LS---TPLASDEADR--L  127

Query  239  IRQWYQLLKQATEETMRPVAHNSRETIRNL----QEAGFT  274
            + +W  L  +          H S  + R+L    +EAGF 
Sbjct  128  LLEWPYLRPRNG--------HISLFSARSLKRLLEEAGFE  159


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 56.8 bits (138),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 29/97 (30%), Positives = 38/97 (39%), Gaps = 12/97 (12%)

Query  128  LDLGCGTGIWAIDVANKYPEAFVVGVDLAPIQP-------PNHPRNCDFYAPFDFESLWA  180
            LDLGCGTG   + +A +   A V GVDL+P               N +F    D E L  
Sbjct  2    LDLGCGTGRLTLALARRG-GARVTGVDLSPEMLERARERAAEAGLNVEFVQ-GDAEDL-P  58

Query  181  LGEDSWDLIHMQMGSG--SVASWPNLYRRIYSHLRPG  215
              + S+DL+                  R I   L+PG
Sbjct  59   FPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPG  95



Lambda      K        H        a         alpha
   0.320    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00002523

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  71.3    2e-15
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  56.8    6e-11


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 71.3 bits (175),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 41/160 (26%), Positives = 62/160 (39%), Gaps = 22/160 (14%)

Query  119  APHPTNGRFLDLGCGTGIWAIDVANKYPEAFVVGVDLAPIQPPNHPRNCDFYAPFDFESL  178
               P+ GR LD GCGTGI+   +  +     V GVD +PI           +  FD +  
Sbjct  18   PKLPSPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAI-ERALLNVRFDQFDEQEA  74

Query  179  WALGEDSWDLIHMQMGSGSVASWPNLYRRIYSHLRPGAWFEQVEIDFEPRCDDRSLEGLA  238
                   +D+I  +     V   P L R+I + L+PG     +     P   D +     
Sbjct  75   AVP-AGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLL-LS---TPLASDEADR--L  127

Query  239  IRQWYQLLKQATEETMRPVAHNSRETIRNL----QEAGFT  274
            + +W  L  +          H S  + R+L    +EAGF 
Sbjct  128  LLEWPYLRPRNG--------HISLFSARSLKRLLEEAGFE  159


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 56.8 bits (138),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 29/97 (30%), Positives = 38/97 (39%), Gaps = 12/97 (12%)

Query  128  LDLGCGTGIWAIDVANKYPEAFVVGVDLAPIQP-------PNHPRNCDFYAPFDFESLWA  180
            LDLGCGTG   + +A +   A V GVDL+P               N +F    D E L  
Sbjct  2    LDLGCGTGRLTLALARRG-GARVTGVDLSPEMLERARERAAEAGLNVEFVQ-GDAEDL-P  58

Query  181  LGEDSWDLIHMQMGSG--SVASWPNLYRRIYSHLRPG  215
              + S+DL+                  R I   L+PG
Sbjct  59   FPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPG  95



Lambda      K        H        a         alpha
   0.320    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00002522

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  71.7    2e-15
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  56.8    6e-11


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 71.7 bits (176),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 41/160 (26%), Positives = 62/160 (39%), Gaps = 22/160 (14%)

Query  131  APHPTNGRFLDLGCGTGIWAIDVANKYPEAFVVGVDLAPIQPPNHPRNCDFYAPFDFESL  190
               P+ GR LD GCGTGI+   +  +     V GVD +PI           +  FD +  
Sbjct  18   PKLPSPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAI-ERALLNVRFDQFDEQEA  74

Query  191  WALGEDSWDLIHMQMGSGSVASWPNLYRRIYSHLRPGAWFEQVEIDFEPRCDDRSLEGLA  250
                   +D+I  +     V   P L R+I + L+PG     +     P   D +     
Sbjct  75   AVP-AGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLL-LS---TPLASDEADR--L  127

Query  251  IRQWYQLLKQATEETMRPVAHNSRETIRNL----QEAGFT  286
            + +W  L  +          H S  + R+L    +EAGF 
Sbjct  128  LLEWPYLRPRNG--------HISLFSARSLKRLLEEAGFE  159


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 56.8 bits (138),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 29/97 (30%), Positives = 38/97 (39%), Gaps = 12/97 (12%)

Query  140  LDLGCGTGIWAIDVANKYPEAFVVGVDLAPIQP-------PNHPRNCDFYAPFDFESLWA  192
            LDLGCGTG   + +A +   A V GVDL+P               N +F    D E L  
Sbjct  2    LDLGCGTGRLTLALARRG-GARVTGVDLSPEMLERARERAAEAGLNVEFVQ-GDAEDL-P  58

Query  193  LGEDSWDLIHMQMGSG--SVASWPNLYRRIYSHLRPG  227
              + S+DL+                  R I   L+PG
Sbjct  59   FPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPG  95



Lambda      K        H        a         alpha
   0.320    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00007799

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  71.3    2e-15
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  56.8    6e-11


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 71.3 bits (175),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 41/160 (26%), Positives = 62/160 (39%), Gaps = 22/160 (14%)

Query  119  APHPTNGRFLDLGCGTGIWAIDVANKYPEAFVVGVDLAPIQPPNHPRNCDFYAPFDFESL  178
               P+ GR LD GCGTGI+   +  +     V GVD +PI           +  FD +  
Sbjct  18   PKLPSPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAI-ERALLNVRFDQFDEQEA  74

Query  179  WALGEDSWDLIHMQMGSGSVASWPNLYRRIYSHLRPGAWFEQVEIDFEPRCDDRSLEGLA  238
                   +D+I  +     V   P L R+I + L+PG     +     P   D +     
Sbjct  75   AVP-AGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLL-LS---TPLASDEADR--L  127

Query  239  IRQWYQLLKQATEETMRPVAHNSRETIRNL----QEAGFT  274
            + +W  L  +          H S  + R+L    +EAGF 
Sbjct  128  LLEWPYLRPRNG--------HISLFSARSLKRLLEEAGFE  159


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 56.8 bits (138),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 29/97 (30%), Positives = 38/97 (39%), Gaps = 12/97 (12%)

Query  128  LDLGCGTGIWAIDVANKYPEAFVVGVDLAPIQP-------PNHPRNCDFYAPFDFESLWA  180
            LDLGCGTG   + +A +   A V GVDL+P               N +F    D E L  
Sbjct  2    LDLGCGTGRLTLALARRG-GARVTGVDLSPEMLERARERAAEAGLNVEFVQ-GDAEDL-P  58

Query  181  LGEDSWDLIHMQMGSG--SVASWPNLYRRIYSHLRPG  215
              + S+DL+                  R I   L+PG
Sbjct  59   FPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPG  95



Lambda      K        H        a         alpha
   0.320    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00002524

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  71.3    2e-15
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  56.8    6e-11


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 71.3 bits (175),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 41/160 (26%), Positives = 62/160 (39%), Gaps = 22/160 (14%)

Query  119  APHPTNGRFLDLGCGTGIWAIDVANKYPEAFVVGVDLAPIQPPNHPRNCDFYAPFDFESL  178
               P+ GR LD GCGTGI+   +  +     V GVD +PI           +  FD +  
Sbjct  18   PKLPSPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAI-ERALLNVRFDQFDEQEA  74

Query  179  WALGEDSWDLIHMQMGSGSVASWPNLYRRIYSHLRPGAWFEQVEIDFEPRCDDRSLEGLA  238
                   +D+I  +     V   P L R+I + L+PG     +     P   D +     
Sbjct  75   AVP-AGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLL-LS---TPLASDEADR--L  127

Query  239  IRQWYQLLKQATEETMRPVAHNSRETIRNL----QEAGFT  274
            + +W  L  +          H S  + R+L    +EAGF 
Sbjct  128  LLEWPYLRPRNG--------HISLFSARSLKRLLEEAGFE  159


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 56.8 bits (138),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 29/97 (30%), Positives = 38/97 (39%), Gaps = 12/97 (12%)

Query  128  LDLGCGTGIWAIDVANKYPEAFVVGVDLAPIQP-------PNHPRNCDFYAPFDFESLWA  180
            LDLGCGTG   + +A +   A V GVDL+P               N +F    D E L  
Sbjct  2    LDLGCGTGRLTLALARRG-GARVTGVDLSPEMLERARERAAEAGLNVEFVQ-GDAEDL-P  58

Query  181  LGEDSWDLIHMQMGSG--SVASWPNLYRRIYSHLRPG  215
              + S+DL+                  R I   L+PG
Sbjct  59   FPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPG  95



Lambda      K        H        a         alpha
   0.320    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00002525

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00007800

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  71.3    2e-15
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  56.8    6e-11


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 71.3 bits (175),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 41/160 (26%), Positives = 62/160 (39%), Gaps = 22/160 (14%)

Query  119  APHPTNGRFLDLGCGTGIWAIDVANKYPEAFVVGVDLAPIQPPNHPRNCDFYAPFDFESL  178
               P+ GR LD GCGTGI+   +  +     V GVD +PI           +  FD +  
Sbjct  18   PKLPSPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAI-ERALLNVRFDQFDEQEA  74

Query  179  WALGEDSWDLIHMQMGSGSVASWPNLYRRIYSHLRPGAWFEQVEIDFEPRCDDRSLEGLA  238
                   +D+I  +     V   P L R+I + L+PG     +     P   D +     
Sbjct  75   AVP-AGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLL-LS---TPLASDEADR--L  127

Query  239  IRQWYQLLKQATEETMRPVAHNSRETIRNL----QEAGFT  274
            + +W  L  +          H S  + R+L    +EAGF 
Sbjct  128  LLEWPYLRPRNG--------HISLFSARSLKRLLEEAGFE  159


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 56.8 bits (138),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 29/97 (30%), Positives = 38/97 (39%), Gaps = 12/97 (12%)

Query  128  LDLGCGTGIWAIDVANKYPEAFVVGVDLAPIQP-------PNHPRNCDFYAPFDFESLWA  180
            LDLGCGTG   + +A +   A V GVDL+P               N +F    D E L  
Sbjct  2    LDLGCGTGRLTLALARRG-GARVTGVDLSPEMLERARERAAEAGLNVEFVQ-GDAEDL-P  58

Query  181  LGEDSWDLIHMQMGSG--SVASWPNLYRRIYSHLRPG  215
              + S+DL+                  R I   L+PG
Sbjct  59   FPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPG  95



Lambda      K        H        a         alpha
   0.320    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00002526

Length=1618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain...  630     0.0   
CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain...  327     4e-104
CDD:461511 pfam04992, RNA_pol_Rpb1_6, RNA polymerase Rpb1, domain...  305     6e-96 
CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain...  240     2e-71 
CDD:461510 pfam04990, RNA_pol_Rpb1_7, RNA polymerase Rpb1, domain...  213     2e-64 
CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain...  194     1e-57 
CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain...  155     1e-44 
CDD:282904 pfam05109, Herpes_BLLF1, Herpes virus major outer enve...  81.5    8e-16 
CDD:465341 pfam17061, PARM, PARM. Human PARM-1 is a mucin-like, a...  64.9    2e-11 


>CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 5, represents the discontinuous 
cleft domain that is required to from the central 
cleft or channel where the DNA is bound.
Length=516

 Score = 630 bits (1626),  Expect = 0.0, Method: Composition-based stats.
 Identities = 240/605 (40%), Positives = 315/605 (52%), Gaps = 97/605 (16%)

Query  698   GLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQF  757
             GLTP EFFFH M GREGLIDTAVKTAE+GY+QR+LVKALE+++V YD TVRNS G+++QF
Sbjct  1     GLTPQEFFFHTMGGREGLIDTAVKTAESGYLQRRLVKALEDLVVTYDDTVRNSGGEIVQF  60

Query  758   IYGEDGLDGAHIENQRVDVIRCSDEKFRERFRVDLMDPERSLGPEVLEQANEIAGDVEVQ  817
             +YGEDGLD   IE Q    I  SD K  ++F+ DL+D    L    L    EI       
Sbjct  61    LYGEDGLDPLKIEKQGRFTIEFSDLKLEDKFKNDLLDDLLLLSEFSLSYKKEILVRDSKL  120

Query  818   RYLDEEWEQLLKDRAFLRTVAKEDDEMMQLPINVQRILETARSTFRIREGAISDLHPAEV  877
                                                                         
Sbjct        ------------------------------------------------------------  

Query  878   IPQVRSLLDRLLVVRGDDPISREAQENATMLFKAQLRSRLAFRRLVTEYSMNKLAFQHVL  937
                            G D +S+EAQE AT+LF+  L+S L  +R+ +E + N  AF  +L
Sbjct  121   ---------------GRDRLSKEAQERATLLFELLLKSGLESKRVRSELTCNSKAFVCLL  165

Query  938   GAIESRFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILN  997
                   + ++  NPGE VG++AAQSIGEP TQMTLNTFHFAGV+SKNVTLGVPRLKEI+N
Sbjct  166   CYGRLLYQQSLINPGEAVGIIAAQSIGEPGTQMTLNTFHFAGVASKNVTLGVPRLKEIIN  225

Query  998   VATNIKTPSMTVYQLPHRCHDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQTTVIEND  1057
             V+ NIK+PS+TVY       + E AK++   +E  +L SV E+ EI YDPD   T I +D
Sbjct  226   VSKNIKSPSLTVYLFDEVGRELEKAKKVYGAIEKVTLGSVVESGEILYDPDPFNTPIISD  285

Query  1058  RDMVESYFIIPEDVTDATSRQSKWLLRIILSRPKLLD-------KGLTVQDVAAKIKQAY  1110
                V  +F I ++VT+      +  L I++ R   +            V   + + K   
Sbjct  286   VKGVVKFFDIIDEVTNEEEIDPETGLLILVIRLLKILNKSIKKVVKSEVIPRSIRNKVDE  345

Query  1111  PKDIAVIFSDNNADEQVIRIRQIQDYKEDEDDEDIEYDVTLKKLEQHLLDTLTLRGVQGV  1170
              +DIA+        +   +IRQ        D+  +E D  L  L   LL  +TLRG+ G+
Sbjct  346   GRDIAIGEITAFIIKISKKIRQDTGGLRRVDELFMEEDPKLAILVASLLGNITLRGIPGI  405

Query  1171  ERAFINEKSKVRVLEDGSLFASKTDPLCKEWVLETSGSSLGEVLAVPG-VDATRTYSNQF  1229
             +R  +NE  K +V  D              WVLET G +L  VL VPG VDA R  SN  
Sbjct  406   KRILVNEDDKGKVEPD--------------WVLETEGVNLLRVLLVPGFVDAGRILSNDI  451

Query  1230  IEVFEVFGIEAARTAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRA  1289
              E+ E+ GIEAAR A+L E+  V  F G Y+N RHL L+ D MT +GY+  + RHGIN+A
Sbjct  452   HEILEILGIEAARNALLNEIRNVYRFQGIYINDRHLELIADQMTRKGYIMAIGRHGINKA  511

Query  1290  DNGAL  1294
             +  AL
Sbjct  512   ELSAL  516


>CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 2, contains the active 
site. The invariant motif -NADFDGD- binds the active site 
magnesium ion.
Length=166

 Score = 327 bits (840),  Expect = 4e-104, Method: Composition-based stats.
 Identities = 120/166 (72%), Positives = 143/166 (86%), Gaps = 0/166 (0%)

Query  228  GKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANGPNEHPG  287
            GKRVDFSARTVI+ DPNL LDEVGVP S A+TLT+PE+VTPYNI++L+QLV NGPN +PG
Sbjct  1    GKRVDFSARTVISPDPNLKLDEVGVPISFAKTLTFPEIVTPYNIKRLRQLVENGPNVYPG  60

Query  288  ARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDIILFNRQPSLHKESMMGHRVR  347
            A YI+R NG R DLR+ +R   ++L  G  VERH++DGD++LFNRQPSLH+ S+MGHRVR
Sbjct  61   ANYIIRINGARRDLRYQKRRLDKELEIGDIVERHVIDGDVVLFNRQPSLHRLSIMGHRVR  120

Query  348  VMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKQLALV  393
            V+P  TFRLNLSVTTPYNADFDGDEMNLHVPQSEE+RAE ++L LV
Sbjct  121  VLPGKTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAEAEELMLV  166


>CDD:461511 pfam04992, RNA_pol_Rpb1_6, RNA polymerase Rpb1, domain 6.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 6, represents a mobile 
module of the RNA polymerase. Domain 6 forms part of the 
shelf module. This family appears to be specific to the largest 
subunit of RNA polymerase II.
Length=188

 Score = 305 bits (783),  Expect = 6e-96, Method: Composition-based stats.
 Identities = 104/188 (55%), Positives = 135/188 (72%), Gaps = 4/188 (2%)

Query  764  LDGAHIENQRVDVIRCSDEKFRERFRVDLMDPERSLGPEVLEQAN--EIAGDVEVQRYLD  821
            LDGA IE Q++D ++ SD  F +R+R+D+MD +    P  LE+    EIAGD EVQ+ LD
Sbjct  1    LDGAFIEKQKIDTLKLSDAAFEKRYRLDVMDEKSGFLPGYLEEGVIKEIAGDPEVQQLLD  60

Query  822  EEWEQLLKDRAFLRTV--AKEDDEMMQLPINVQRILETARSTFRIREGAISDLHPAEVIP  879
            EE+EQLL+DR  LR +     D ++ QLP+N+QRI++ A+  F I +   SDLHP  VI 
Sbjct  61   EEYEQLLEDRELLREIIFPTGDSKVPQLPVNIQRIIQNAQKIFHIDDRKPSDLHPIYVIE  120

Query  880  QVRSLLDRLLVVRGDDPISREAQENATMLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGA  939
             VR LLDRL+VVRGDDP+S+EAQENAT+LFK  LRSRLA +R++ EY +NK AF  VLG 
Sbjct  121  GVRELLDRLVVVRGDDPLSKEAQENATLLFKILLRSRLASKRVLEEYRLNKEAFDWVLGE  180

Query  940  IESRFAKA  947
            IESRF +A
Sbjct  181  IESRFLQA  188


>CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 1, represents the clamp 
domain, which a mobile domain involved in positioning the 
DNA, maintenance of the transcription bubble and positioning 
of the nascent RNA strand.
Length=320

 Score = 240 bits (614),  Expect = 2e-71, Method: Composition-based stats.
 Identities = 98/226 (43%), Positives = 131/226 (58%), Gaps = 27/226 (12%)

Query  1    MRDPKRRFDHIWRLSKDVLICEADPPPDEDEPFSKESSKPLRRHGGCGNAQPTIRKEGIT  60
            + + K     I  L K   +CE     +                G CG+ QP  RKEG+ 
Sbjct  122  LENLKMGAKAILELCKKKDLCEHCGGKN----------------GVCGSQQPVSRKEGLK  165

Query  61   LVGTWKPNKSMMDEDEMQQPEKKVITPQMALNVFRNISHEDVRIMGLSNDYARPEWMIIT  120
            L    K +K           EK+++ P+  L +F+ IS EDV I+G +   +RPEWMI+T
Sbjct  166  LKAAIKKSKEE--------EEKEILNPEKVLKIFKRISDEDVEILGFNPSGSRPEWMILT  217

Query  121  VLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIIRANQNVQRCEQEGAPEHVVREFES  180
            VLPVPPP +RPSV + G   G+R EDDLT+KL +II+ N  +++  + GAP H++RE   
Sbjct  218  VLPVPPPCIRPSVQLDG---GRRAEDDLTHKLRDIIKRNNRLKKLLELGAPSHIIREEWR  274

Query  181  LLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNL  226
            LLQ HVAT  DN+I G P A+QKS RP+K+I  RLKGKEGR R NL
Sbjct  275  LLQEHVATLFDNEIPGLPPALQKSKRPLKSISQRLKGKEGRFRGNL  320


>CDD:461510 pfam04990, RNA_pol_Rpb1_7, RNA polymerase Rpb1, domain 7.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 7, represents a mobile 
module of the RNA polymerase. Domain 7 forms a substantial 
interaction with the lobe domain of Rpb2 (pfam04561).
Length=136

 Score = 213 bits (544),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 79/136 (58%), Positives = 105/136 (77%), Gaps = 2/136 (1%)

Query  1032  TSLRSVTEATEIYYDPDIQTTVIENDRDMVESYFIIPEDVTDATSRQSKWLLRIILSRPK  1091
             T+LRSVT ATEIYYDPD + TVIE DR+ VESYF IP++  +   RQS WLLRI L R K
Sbjct  1     TTLRSVTAATEIYYDPDPRNTVIEEDREFVESYFEIPDEDVEDLDRQSPWLLRIELDRKK  60

Query  1092  LLDKGLTVQDVAAKIKQAYPKDIAVIFSDNNADEQVIRIRQIQDYKEDEDDEDIEYD--V  1149
             +LDKGLT++DVA KIK+ +  D+ VIFSD+NA++ VIRIR I D KE +++++ + +  V
Sbjct  61    MLDKGLTMEDVAEKIKEEFGNDLFVIFSDDNAEKLVIRIRIINDEKEKDEEQEDKAEDDV  120

Query  1150  TLKKLEQHLLDTLTLR  1165
              LK+LE ++LD+LTLR
Sbjct  121   FLKRLEANMLDSLTLR  136


>CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 3, represents the pore 
domain. The 3' end of RNA is positioned close to this domain. 
The pore delimited by this domain is thought to act as 
a channel through which nucleotides enter the active site and/or 
where the 3' end of the RNA may be extruded during back-tracking.
Length=158

 Score = 194 bits (496),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 68/166 (41%), Positives = 96/166 (58%), Gaps = 9/166 (5%)

Query  396  NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIMLWVPDWDGVIPPPAILKP-  454
            NI+SPQ   P++G  QD + G Y + R D F  +E+VM ++++      V+P PAILKP 
Sbjct  1    NILSPQNGKPIIGPSQDMVLGAYLLTREDTFFDREEVMQLLMYGI----VLPHPAILKPI  56

Query  455  RPRWTGKQMISMALPSGLNLLRVEKDNSSLAEKFSPLTDGGLLIHGGQLMYGMFSKKTVG  514
            +P WTGKQ  S  LP+ +N     K N    E+     D  +LI+ G+L+ G+  KKTVG
Sbjct  57   KPLWTGKQTFSRLLPNEINPKGKPKTN----EEDLCENDSYVLINNGELISGVIDKKTVG  112

Query  515  ASGGGVIHTIFNEYGPDTAVAFFNGAQTIVNYWLLHNGFSIGIGDT  560
             S G +IH I+ EYGP+    F +  Q +   +L  +GFSIGI D 
Sbjct  113  KSLGSLIHIIYKEYGPEETAKFLDRLQKLGFRYLTKSGFSIGIDDI  158


>CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 4, represents the funnel 
domain. The funnel contain the binding site for some elongation 
factors.
Length=108

 Score = 155 bits (394),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 61/108 (56%), Positives = 73/108 (68%), Gaps = 0/108 (0%)

Query  584  ITASATENTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSK  643
            IT +     LE + GM + E+FE+ ++  LN ARD AG+   KSL   N+   MA SG+K
Sbjct  1    ITDAERYGKLEDIWGMTLEESFEALINNILNKARDPAGNIASKSLDPNNSIYMMADSGAK  60

Query  644  GSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFV  691
            GS INISQ+    GQQ+VEGKRIPFGF  RTLPHF KDD  PESRGFV
Sbjct  61   GSIINISQIAGCRGQQNVEGKRIPFGFSGRTLPHFKKDDEGPESRGFV  108


>CDD:282904 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein 
(BLLF1).  This family consists of the BLLF1 viral 
late glycoprotein, also termed gp350/220. It is the most abundantly 
expressed glycoprotein in the viral envelope of the 
Herpesviruses and is the major antigen responsible for stimulating 
the production of neutralising antibodies in vivo.
Length=886

 Score = 81.5 bits (200),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 75/252 (30%), Positives = 104/252 (41%), Gaps = 36/252 (14%)

Query  1375  ATQYDTGSPMQESAFIGTPD-----PESAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPA  1429
             A +  T SP   +     P+     P S   P       S G      PT       SP 
Sbjct  424   APESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTG------PTVSTADVTSPT  477

Query  1430  -ATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSP-RFMTSPGFSPASPSFAPT  1487
              A + +G SP +P S +P   G    +          +TSP   +T+P  +  SP+ A T
Sbjct  478   PAGTTSGASPVTP-SPSPRDNGTESKAPD--------MTSPTSAVTTPTPNATSPTPAVT  528

Query  1488  SPAYSPTSPAYGQASPTSPSYSPTSPGFSP----TSPNYSPTSPSFSPASPAFSPTSPSY  1543
             +P  + TSP  G+ SPTS   +PT    SP    T+P  + T P+    SP  + T+P+ 
Sbjct  529   TPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTP  588

Query  1544  SPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPG  1603
             + TSP +G        TSP +     T  G S T P   SP  P  A S  + G      
Sbjct  589   NATSPTVG-------ETSPQANTTNHTLGGTSST-PVVTSP--PKNATSAVTTGQHNITS  638

Query  1604  YSPTSPAFSPSS  1615
              S +S +  PSS
Sbjct  639   SSTSSMSLRPSS  650


 Score = 76.5 bits (187),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 98/237 (41%), Gaps = 20/237 (8%)

Query  1374  AATQYDTGSPMQESAFIGTPDPESAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPAATSP  1433
             AA    TG P           P S    +  A   SP       P G   G  SP   SP
Sbjct  440   AAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSP------TPAGTTSGA-SPVTPSP  492

Query  1434  A----GYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSPRFMTSPGFSPASPSFAPTSP  1489
             +    G    +P   +PTS   +PT + +  +P +   +P   TSP     SP+ A T+P
Sbjct  493   SPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPN-ATSPTLGKTSPTSAVTTP  551

Query  1490  AYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPA  1549
               + TSP     + T+P+ + T P    TSP  + T+P+ +  SP    TSP  + T+  
Sbjct  552   TPNATSPT---PAVTTPTPNATIPTLGKTSPTSAVTTPTPNATSPTVGETSPQANTTNHT  608

Query  1550  IGGAGRHLSPTSPTSPKYTPTSPGW-----SPTSPQTYSPTSPNFAGSPTSPGGPTS  1601
             +GG       TSP     +  + G      S TS  +  P+S +   SP++    TS
Sbjct  609   LGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPSTSDNSTS  665


>CDD:465341 pfam17061, PARM, PARM.  Human PARM-1 is a mucin-like, androgen-regulated 
transmembrane protein that is present in most tissues, 
with high levels in the heart, kidney and placenta. It 
has been shown to be induced and expressed in prostate after 
castration and may have a role in cell proliferation and 
immortalisation in prostate cancer.
Length=296

 Score = 64.9 bits (158),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 62/184 (34%), Positives = 81/184 (44%), Gaps = 35/184 (19%)

Query  1428  PAATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSPRFMTSPGFSPAS-PSFAP  1486
               +TSPA  S     S +P+ PG SPTSS      G+ +T      S G    S P+   
Sbjct  74    EESTSPA--SNWEGTSTDPSPPGLSPTSS------GVHLTPTPEEHSSGTPETSVPATGS  125

Query  1487  TSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPT  1546
              SPA SPT       SP +P+ SP+SP  SP  P  S  S + +  S   + T P+ +PT
Sbjct  126   QSPAESPTLT-----SPQAPASSPSSPSTSP--PEVSSASVTTNH-SSTETSTQPTGAPT  177

Query  1547  SPAIGGAGRHLSPTSPTSPKYTPTS-----PGWSPTSPQTYSPTSPNFAGSPTSP--GGP  1599
             +P         SPT   S  +TPTS     P  + T+PQT   T P+             
Sbjct  178   TPE--------SPTEEHSSGHTPTSHATSEPVPTETTPQT---TVPSKVTCELIDTETTT  226

Query  1600  TSPG  1603
             TSP 
Sbjct  227   TSPR  230



Lambda      K        H        a         alpha
   0.315    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2061225278


Query= TCONS_00002527

Length=1621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain...  630     0.0   
CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain...  327     4e-104
CDD:461511 pfam04992, RNA_pol_Rpb1_6, RNA polymerase Rpb1, domain...  305     6e-96 
CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain...  240     2e-71 
CDD:461510 pfam04990, RNA_pol_Rpb1_7, RNA polymerase Rpb1, domain...  213     2e-64 
CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain...  194     1e-57 
CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain...  155     1e-44 
CDD:282904 pfam05109, Herpes_BLLF1, Herpes virus major outer enve...  80.7    1e-15 
CDD:465341 pfam17061, PARM, PARM. Human PARM-1 is a mucin-like, a...  64.5    3e-11 


>CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 5, represents the discontinuous 
cleft domain that is required to from the central 
cleft or channel where the DNA is bound.
Length=516

 Score = 630 bits (1626),  Expect = 0.0, Method: Composition-based stats.
 Identities = 240/605 (40%), Positives = 315/605 (52%), Gaps = 97/605 (16%)

Query  698   GLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQF  757
             GLTP EFFFH M GREGLIDTAVKTAE+GY+QR+LVKALE+++V YD TVRNS G+++QF
Sbjct  1     GLTPQEFFFHTMGGREGLIDTAVKTAESGYLQRRLVKALEDLVVTYDDTVRNSGGEIVQF  60

Query  758   IYGEDGLDGAHIENQRVDVIRCSDEKFRERFRVDLMDPERSLGPEVLEQANEIAGDVEVQ  817
             +YGEDGLD   IE Q    I  SD K  ++F+ DL+D    L    L    EI       
Sbjct  61    LYGEDGLDPLKIEKQGRFTIEFSDLKLEDKFKNDLLDDLLLLSEFSLSYKKEILVRDSKL  120

Query  818   RYLDEEWEQLLKDRAFLRTVAKEDDEMMQLPINVQRILETARSTFRIREGAISDLHPAEV  877
                                                                         
Sbjct        ------------------------------------------------------------  

Query  878   IPQVRSLLDRLLVVRGDDPISREAQENATMLFKAQLRSRLAFRRLVTEYSMNKLAFQHVL  937
                            G D +S+EAQE AT+LF+  L+S L  +R+ +E + N  AF  +L
Sbjct  121   ---------------GRDRLSKEAQERATLLFELLLKSGLESKRVRSELTCNSKAFVCLL  165

Query  938   GAIESRFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILN  997
                   + ++  NPGE VG++AAQSIGEP TQMTLNTFHFAGV+SKNVTLGVPRLKEI+N
Sbjct  166   CYGRLLYQQSLINPGEAVGIIAAQSIGEPGTQMTLNTFHFAGVASKNVTLGVPRLKEIIN  225

Query  998   VATNIKTPSMTVYQLPHRCHDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQTTVIEND  1057
             V+ NIK+PS+TVY       + E AK++   +E  +L SV E+ EI YDPD   T I +D
Sbjct  226   VSKNIKSPSLTVYLFDEVGRELEKAKKVYGAIEKVTLGSVVESGEILYDPDPFNTPIISD  285

Query  1058  RDMVESYFIIPEDVTDATSRQSKWLLRIILSRPKLLD-------KGLTVQDVAAKIKQAY  1110
                V  +F I ++VT+      +  L I++ R   +            V   + + K   
Sbjct  286   VKGVVKFFDIIDEVTNEEEIDPETGLLILVIRLLKILNKSIKKVVKSEVIPRSIRNKVDE  345

Query  1111  PKDIAVIFSDNNADEQVIRIRQIQDYKEDEDDEDIEYDVTLKKLEQHLLDTLTLRGVQGV  1170
              +DIA+        +   +IRQ        D+  +E D  L  L   LL  +TLRG+ G+
Sbjct  346   GRDIAIGEITAFIIKISKKIRQDTGGLRRVDELFMEEDPKLAILVASLLGNITLRGIPGI  405

Query  1171  ERAFINEKSKVRVLEDGSLFASKTDPLCKEWVLETSGSSLGEVLAVPG-VDATRTYSNQF  1229
             +R  +NE  K +V  D              WVLET G +L  VL VPG VDA R  SN  
Sbjct  406   KRILVNEDDKGKVEPD--------------WVLETEGVNLLRVLLVPGFVDAGRILSNDI  451

Query  1230  IEVFEVFGIEAARTAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRA  1289
              E+ E+ GIEAAR A+L E+  V  F G Y+N RHL L+ D MT +GY+  + RHGIN+A
Sbjct  452   HEILEILGIEAARNALLNEIRNVYRFQGIYINDRHLELIADQMTRKGYIMAIGRHGINKA  511

Query  1290  DNGAL  1294
             +  AL
Sbjct  512   ELSAL  516


>CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 2, contains the active 
site. The invariant motif -NADFDGD- binds the active site 
magnesium ion.
Length=166

 Score = 327 bits (840),  Expect = 4e-104, Method: Composition-based stats.
 Identities = 120/166 (72%), Positives = 143/166 (86%), Gaps = 0/166 (0%)

Query  228  GKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANGPNEHPG  287
            GKRVDFSARTVI+ DPNL LDEVGVP S A+TLT+PE+VTPYNI++L+QLV NGPN +PG
Sbjct  1    GKRVDFSARTVISPDPNLKLDEVGVPISFAKTLTFPEIVTPYNIKRLRQLVENGPNVYPG  60

Query  288  ARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDIILFNRQPSLHKESMMGHRVR  347
            A YI+R NG R DLR+ +R   ++L  G  VERH++DGD++LFNRQPSLH+ S+MGHRVR
Sbjct  61   ANYIIRINGARRDLRYQKRRLDKELEIGDIVERHVIDGDVVLFNRQPSLHRLSIMGHRVR  120

Query  348  VMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKQLALV  393
            V+P  TFRLNLSVTTPYNADFDGDEMNLHVPQSEE+RAE ++L LV
Sbjct  121  VLPGKTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAEAEELMLV  166


>CDD:461511 pfam04992, RNA_pol_Rpb1_6, RNA polymerase Rpb1, domain 6.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 6, represents a mobile 
module of the RNA polymerase. Domain 6 forms part of the 
shelf module. This family appears to be specific to the largest 
subunit of RNA polymerase II.
Length=188

 Score = 305 bits (783),  Expect = 6e-96, Method: Composition-based stats.
 Identities = 104/188 (55%), Positives = 135/188 (72%), Gaps = 4/188 (2%)

Query  764  LDGAHIENQRVDVIRCSDEKFRERFRVDLMDPERSLGPEVLEQAN--EIAGDVEVQRYLD  821
            LDGA IE Q++D ++ SD  F +R+R+D+MD +    P  LE+    EIAGD EVQ+ LD
Sbjct  1    LDGAFIEKQKIDTLKLSDAAFEKRYRLDVMDEKSGFLPGYLEEGVIKEIAGDPEVQQLLD  60

Query  822  EEWEQLLKDRAFLRTV--AKEDDEMMQLPINVQRILETARSTFRIREGAISDLHPAEVIP  879
            EE+EQLL+DR  LR +     D ++ QLP+N+QRI++ A+  F I +   SDLHP  VI 
Sbjct  61   EEYEQLLEDRELLREIIFPTGDSKVPQLPVNIQRIIQNAQKIFHIDDRKPSDLHPIYVIE  120

Query  880  QVRSLLDRLLVVRGDDPISREAQENATMLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGA  939
             VR LLDRL+VVRGDDP+S+EAQENAT+LFK  LRSRLA +R++ EY +NK AF  VLG 
Sbjct  121  GVRELLDRLVVVRGDDPLSKEAQENATLLFKILLRSRLASKRVLEEYRLNKEAFDWVLGE  180

Query  940  IESRFAKA  947
            IESRF +A
Sbjct  181  IESRFLQA  188


>CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 1, represents the clamp 
domain, which a mobile domain involved in positioning the 
DNA, maintenance of the transcription bubble and positioning 
of the nascent RNA strand.
Length=320

 Score = 240 bits (614),  Expect = 2e-71, Method: Composition-based stats.
 Identities = 98/226 (43%), Positives = 131/226 (58%), Gaps = 27/226 (12%)

Query  1    MRDPKRRFDHIWRLSKDVLICEADPPPDEDEPFSKESSKPLRRHGGCGNAQPTIRKEGIT  60
            + + K     I  L K   +CE     +                G CG+ QP  RKEG+ 
Sbjct  122  LENLKMGAKAILELCKKKDLCEHCGGKN----------------GVCGSQQPVSRKEGLK  165

Query  61   LVGTWKPNKSMMDEDEMQQPEKKVITPQMALNVFRNISHEDVRIMGLSNDYARPEWMIIT  120
            L    K +K           EK+++ P+  L +F+ IS EDV I+G +   +RPEWMI+T
Sbjct  166  LKAAIKKSKEE--------EEKEILNPEKVLKIFKRISDEDVEILGFNPSGSRPEWMILT  217

Query  121  VLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIIRANQNVQRCEQEGAPEHVVREFES  180
            VLPVPPP +RPSV + G   G+R EDDLT+KL +II+ N  +++  + GAP H++RE   
Sbjct  218  VLPVPPPCIRPSVQLDG---GRRAEDDLTHKLRDIIKRNNRLKKLLELGAPSHIIREEWR  274

Query  181  LLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNL  226
            LLQ HVAT  DN+I G P A+QKS RP+K+I  RLKGKEGR R NL
Sbjct  275  LLQEHVATLFDNEIPGLPPALQKSKRPLKSISQRLKGKEGRFRGNL  320


>CDD:461510 pfam04990, RNA_pol_Rpb1_7, RNA polymerase Rpb1, domain 7.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 7, represents a mobile 
module of the RNA polymerase. Domain 7 forms a substantial 
interaction with the lobe domain of Rpb2 (pfam04561).
Length=136

 Score = 213 bits (544),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 79/136 (58%), Positives = 105/136 (77%), Gaps = 2/136 (1%)

Query  1032  TSLRSVTEATEIYYDPDIQTTVIENDRDMVESYFIIPEDVTDATSRQSKWLLRIILSRPK  1091
             T+LRSVT ATEIYYDPD + TVIE DR+ VESYF IP++  +   RQS WLLRI L R K
Sbjct  1     TTLRSVTAATEIYYDPDPRNTVIEEDREFVESYFEIPDEDVEDLDRQSPWLLRIELDRKK  60

Query  1092  LLDKGLTVQDVAAKIKQAYPKDIAVIFSDNNADEQVIRIRQIQDYKEDEDDEDIEYD--V  1149
             +LDKGLT++DVA KIK+ +  D+ VIFSD+NA++ VIRIR I D KE +++++ + +  V
Sbjct  61    MLDKGLTMEDVAEKIKEEFGNDLFVIFSDDNAEKLVIRIRIINDEKEKDEEQEDKAEDDV  120

Query  1150  TLKKLEQHLLDTLTLR  1165
              LK+LE ++LD+LTLR
Sbjct  121   FLKRLEANMLDSLTLR  136


>CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 3, represents the pore 
domain. The 3' end of RNA is positioned close to this domain. 
The pore delimited by this domain is thought to act as 
a channel through which nucleotides enter the active site and/or 
where the 3' end of the RNA may be extruded during back-tracking.
Length=158

 Score = 194 bits (496),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 68/166 (41%), Positives = 96/166 (58%), Gaps = 9/166 (5%)

Query  396  NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIMLWVPDWDGVIPPPAILKP-  454
            NI+SPQ   P++G  QD + G Y + R D F  +E+VM ++++      V+P PAILKP 
Sbjct  1    NILSPQNGKPIIGPSQDMVLGAYLLTREDTFFDREEVMQLLMYGI----VLPHPAILKPI  56

Query  455  RPRWTGKQMISMALPSGLNLLRVEKDNSSLAEKFSPLTDGGLLIHGGQLMYGMFSKKTVG  514
            +P WTGKQ  S  LP+ +N     K N    E+     D  +LI+ G+L+ G+  KKTVG
Sbjct  57   KPLWTGKQTFSRLLPNEINPKGKPKTN----EEDLCENDSYVLINNGELISGVIDKKTVG  112

Query  515  ASGGGVIHTIFNEYGPDTAVAFFNGAQTIVNYWLLHNGFSIGIGDT  560
             S G +IH I+ EYGP+    F +  Q +   +L  +GFSIGI D 
Sbjct  113  KSLGSLIHIIYKEYGPEETAKFLDRLQKLGFRYLTKSGFSIGIDDI  158


>CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 4, represents the funnel 
domain. The funnel contain the binding site for some elongation 
factors.
Length=108

 Score = 155 bits (394),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 61/108 (56%), Positives = 73/108 (68%), Gaps = 0/108 (0%)

Query  584  ITASATENTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSK  643
            IT +     LE + GM + E+FE+ ++  LN ARD AG+   KSL   N+   MA SG+K
Sbjct  1    ITDAERYGKLEDIWGMTLEESFEALINNILNKARDPAGNIASKSLDPNNSIYMMADSGAK  60

Query  644  GSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFV  691
            GS INISQ+    GQQ+VEGKRIPFGF  RTLPHF KDD  PESRGFV
Sbjct  61   GSIINISQIAGCRGQQNVEGKRIPFGFSGRTLPHFKKDDEGPESRGFV  108


>CDD:282904 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein 
(BLLF1).  This family consists of the BLLF1 viral 
late glycoprotein, also termed gp350/220. It is the most abundantly 
expressed glycoprotein in the viral envelope of the 
Herpesviruses and is the major antigen responsible for stimulating 
the production of neutralising antibodies in vivo.
Length=886

 Score = 80.7 bits (198),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 77/262 (29%), Positives = 108/262 (41%), Gaps = 41/262 (16%)

Query  1375  ATQYDTGSPMQESAFIGTPD-----PESAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPA  1429
             A +  T SP   +     P+     P S   P       S G      PT       SP 
Sbjct  424   APESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTG------PTVSTADVTSPT  477

Query  1430  -ATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSP-RFMTSPGFSPASPSFAPT  1487
              A + +G SP +P S +P   G    +          +TSP   +T+P  +  SP+ A T
Sbjct  478   PAGTTSGASPVTP-SPSPRDNGTESKAPD--------MTSPTSAVTTPTPNATSPTPAVT  528

Query  1488  SPAYSPTSPAYGQASPTSPSYSPTSPGFSP----TSPNYSPTSPSFSPASPAFSPTSPSY  1543
             +P  + TSP  G+ SPTS   +PT    SP    T+P  + T P+    SP  + T+P+ 
Sbjct  529   TPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTP  588

Query  1544  SPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPG  1603
             + TSP +G        TSP +     T  G S T P   SP  P  A S  + G      
Sbjct  589   NATSPTVG-------ETSPQANTTNHTLGGTSST-PVVTSP--PKNATSAVTTGQHNITS  638

Query  1604  YSPTSPAFSPSYV-----PSSS  1620
              S +S +  PS +     PS+S
Sbjct  639   SSTSSMSLRPSSISETLSPSTS  660


>CDD:465341 pfam17061, PARM, PARM.  Human PARM-1 is a mucin-like, androgen-regulated 
transmembrane protein that is present in most tissues, 
with high levels in the heart, kidney and placenta. It 
has been shown to be induced and expressed in prostate after 
castration and may have a role in cell proliferation and 
immortalisation in prostate cancer.
Length=296

 Score = 64.5 bits (157),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 62/184 (34%), Positives = 81/184 (44%), Gaps = 35/184 (19%)

Query  1428  PAATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSPRFMTSPGFSPAS-PSFAP  1486
               +TSPA  S     S +P+ PG SPTSS      G+ +T      S G    S P+   
Sbjct  74    EESTSPA--SNWEGTSTDPSPPGLSPTSS------GVHLTPTPEEHSSGTPETSVPATGS  125

Query  1487  TSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPT  1546
              SPA SPT       SP +P+ SP+SP  SP  P  S  S + +  S   + T P+ +PT
Sbjct  126   QSPAESPTLT-----SPQAPASSPSSPSTSP--PEVSSASVTTNH-SSTETSTQPTGAPT  177

Query  1547  SPAIGGAGRHLSPTSPTSPKYTPTS-----PGWSPTSPQTYSPTSPNFAGSPTSP--GGP  1599
             +P         SPT   S  +TPTS     P  + T+PQT   T P+             
Sbjct  178   TPE--------SPTEEHSSGHTPTSHATSEPVPTETTPQT---TVPSKVTCELIDTETTT  226

Query  1600  TSPG  1603
             TSP 
Sbjct  227   TSPR  230



Lambda      K        H        a         alpha
   0.315    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2065296164


Query= TCONS_00002528

Length=1750
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain...  630     0.0   
CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain...  429     2e-138
CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain...  327     5e-104
CDD:461511 pfam04992, RNA_pol_Rpb1_6, RNA polymerase Rpb1, domain...  305     7e-96 
CDD:461510 pfam04990, RNA_pol_Rpb1_7, RNA polymerase Rpb1, domain...  212     2e-64 
CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain...  194     1e-57 
CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain...  155     9e-45 
CDD:282904 pfam05109, Herpes_BLLF1, Herpes virus major outer enve...  81.9    6e-16 
CDD:465341 pfam17061, PARM, PARM. Human PARM-1 is a mucin-like, a...  65.7    1e-11 


>CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 5, represents the discontinuous 
cleft domain that is required to from the central 
cleft or channel where the DNA is bound.
Length=516

 Score = 630 bits (1626),  Expect = 0.0, Method: Composition-based stats.
 Identities = 240/605 (40%), Positives = 315/605 (52%), Gaps = 97/605 (16%)

Query  827   GLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQF  886
             GLTP EFFFH M GREGLIDTAVKTAE+GY+QR+LVKALE+++V YD TVRNS G+++QF
Sbjct  1     GLTPQEFFFHTMGGREGLIDTAVKTAESGYLQRRLVKALEDLVVTYDDTVRNSGGEIVQF  60

Query  887   IYGEDGLDGAHIENQRVDVIRCSDEKFRERFRVDLMDPERSLGPEVLEQANEIAGDVEVQ  946
             +YGEDGLD   IE Q    I  SD K  ++F+ DL+D    L    L    EI       
Sbjct  61    LYGEDGLDPLKIEKQGRFTIEFSDLKLEDKFKNDLLDDLLLLSEFSLSYKKEILVRDSKL  120

Query  947   RYLDEEWEQLLKDRAFLRTVAKEDDEMMQLPINVQRILETARSTFRIREGAISDLHPAEV  1006
                                                                         
Sbjct        ------------------------------------------------------------  

Query  1007  IPQVRSLLDRLLVVRGDDPISREAQENATMLFKAQLRSRLAFRRLVTEYSMNKLAFQHVL  1066
                            G D +S+EAQE AT+LF+  L+S L  +R+ +E + N  AF  +L
Sbjct  121   ---------------GRDRLSKEAQERATLLFELLLKSGLESKRVRSELTCNSKAFVCLL  165

Query  1067  GAIESRFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILN  1126
                   + ++  NPGE VG++AAQSIGEP TQMTLNTFHFAGV+SKNVTLGVPRLKEI+N
Sbjct  166   CYGRLLYQQSLINPGEAVGIIAAQSIGEPGTQMTLNTFHFAGVASKNVTLGVPRLKEIIN  225

Query  1127  VATNIKTPSMTVYQLPHRCHDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQTTVIEND  1186
             V+ NIK+PS+TVY       + E AK++   +E  +L SV E+ EI YDPD   T I +D
Sbjct  226   VSKNIKSPSLTVYLFDEVGRELEKAKKVYGAIEKVTLGSVVESGEILYDPDPFNTPIISD  285

Query  1187  RDMVESYFIIPEDVTDATSRQSKWLLRIILSRPKLLD-------KGLTVQDVAAKIKQAY  1239
                V  +F I ++VT+      +  L I++ R   +            V   + + K   
Sbjct  286   VKGVVKFFDIIDEVTNEEEIDPETGLLILVIRLLKILNKSIKKVVKSEVIPRSIRNKVDE  345

Query  1240  PKDIAVIFSDNNADEQVIRIRQIQDYKEDEDDEDIEYDVTLKKLEQHLLDTLTLRGVQGV  1299
              +DIA+        +   +IRQ        D+  +E D  L  L   LL  +TLRG+ G+
Sbjct  346   GRDIAIGEITAFIIKISKKIRQDTGGLRRVDELFMEEDPKLAILVASLLGNITLRGIPGI  405

Query  1300  ERAFINEKSKVRVLEDGSLFASKTDPLCKEWVLETSGSSLGEVLAVPG-VDATRTYSNQF  1358
             +R  +NE  K +V  D              WVLET G +L  VL VPG VDA R  SN  
Sbjct  406   KRILVNEDDKGKVEPD--------------WVLETEGVNLLRVLLVPGFVDAGRILSNDI  451

Query  1359  IEVFEVFGIEAARTAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRA  1418
              E+ E+ GIEAAR A+L E+  V  F G Y+N RHL L+ D MT +GY+  + RHGIN+A
Sbjct  452   HEILEILGIEAARNALLNEIRNVYRFQGIYINDRHLELIADQMTRKGYIMAIGRHGINKA  511

Query  1419  DNGAL  1423
             +  AL
Sbjct  512   ELSAL  516


>CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 1, represents the clamp 
domain, which a mobile domain involved in positioning the 
DNA, maintenance of the transcription bubble and positioning 
of the nascent RNA strand.
Length=320

 Score = 429 bits (1106),  Expect = 2e-138, Method: Composition-based stats.
 Identities = 160/347 (46%), Positives = 210/347 (61%), Gaps = 31/347 (9%)

Query  13   LRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDEQRMRPRTKGLNDPRLGTIDRQWNCETC  72
            L+ IKEIQFG+ SPEEI++ SV  V  PET +   ++P   GL D R+GTID+ + CETC
Sbjct  1    LKKIKEIQFGIASPEEIRKWSVGEVTKPETYNYGSLKPEEGGLLDERMGTIDKDYECETC  60

Query  73   EEGQKECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCGKIKADTSD----SKFLEAL  128
             + +K+CPGHFGHIELA PVFHIGF  K  K+LE VC  C K+  D       +K  + L
Sbjct  61   GKKKKDCPGHFGHIELAKPVFHIGFFKKTLKILECVCKYCSKLLLDPGKPKLFNKDKKRL  120

Query  129  RMRDPKRRFDHIWRLSKDVLICEADPPPDEDEPFSKESSKPLRRHGGCGNAQPTIRKEGI  188
             + + K     I  L K   +CE     +                G CG+ QP  RKEG+
Sbjct  121  GLENLKMGAKAILELCKKKDLCEHCGGKN----------------GVCGSQQPVSRKEGL  164

Query  189  TLVGTWKPNKSMMDEDEMQQPEKKVITPQMALNVFRNISHEDVRIMGLSNDYARPEWMII  248
             L    K +K           EK+++ P+  L +F+ IS EDV I+G +   +RPEWMI+
Sbjct  165  KLKAAIKKSKEE--------EEKEILNPEKVLKIFKRISDEDVEILGFNPSGSRPEWMIL  216

Query  249  TVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIIRANQNVQRCEQEGAPEHVVREFE  308
            TVLPVPPP +RPSV + G   G+R EDDLT+KL +II+ N  +++  + GAP H++RE  
Sbjct  217  TVLPVPPPCIRPSVQLDG---GRRAEDDLTHKLRDIIKRNNRLKKLLELGAPSHIIREEW  273

Query  309  SLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNL  355
             LLQ HVAT  DN+I G P A+QKS RP+K+I  RLKGKEGR R NL
Sbjct  274  RLLQEHVATLFDNEIPGLPPALQKSKRPLKSISQRLKGKEGRFRGNL  320


>CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 2, contains the active 
site. The invariant motif -NADFDGD- binds the active site 
magnesium ion.
Length=166

 Score = 327 bits (841),  Expect = 5e-104, Method: Composition-based stats.
 Identities = 120/166 (72%), Positives = 143/166 (86%), Gaps = 0/166 (0%)

Query  357  GKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANGPNEHPG  416
            GKRVDFSARTVI+ DPNL LDEVGVP S A+TLT+PE+VTPYNI++L+QLV NGPN +PG
Sbjct  1    GKRVDFSARTVISPDPNLKLDEVGVPISFAKTLTFPEIVTPYNIKRLRQLVENGPNVYPG  60

Query  417  ARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDIILFNRQPSLHKESMMGHRVR  476
            A YI+R NG R DLR+ +R   ++L  G  VERH++DGD++LFNRQPSLH+ S+MGHRVR
Sbjct  61   ANYIIRINGARRDLRYQKRRLDKELEIGDIVERHVIDGDVVLFNRQPSLHRLSIMGHRVR  120

Query  477  VMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKQLALV  522
            V+P  TFRLNLSVTTPYNADFDGDEMNLHVPQSEE+RAE ++L LV
Sbjct  121  VLPGKTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAEAEELMLV  166


>CDD:461511 pfam04992, RNA_pol_Rpb1_6, RNA polymerase Rpb1, domain 6.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 6, represents a mobile 
module of the RNA polymerase. Domain 6 forms part of the 
shelf module. This family appears to be specific to the largest 
subunit of RNA polymerase II.
Length=188

 Score = 305 bits (783),  Expect = 7e-96, Method: Composition-based stats.
 Identities = 104/188 (55%), Positives = 135/188 (72%), Gaps = 4/188 (2%)

Query  893   LDGAHIENQRVDVIRCSDEKFRERFRVDLMDPERSLGPEVLEQAN--EIAGDVEVQRYLD  950
             LDGA IE Q++D ++ SD  F +R+R+D+MD +    P  LE+    EIAGD EVQ+ LD
Sbjct  1     LDGAFIEKQKIDTLKLSDAAFEKRYRLDVMDEKSGFLPGYLEEGVIKEIAGDPEVQQLLD  60

Query  951   EEWEQLLKDRAFLRTV--AKEDDEMMQLPINVQRILETARSTFRIREGAISDLHPAEVIP  1008
             EE+EQLL+DR  LR +     D ++ QLP+N+QRI++ A+  F I +   SDLHP  VI 
Sbjct  61    EEYEQLLEDRELLREIIFPTGDSKVPQLPVNIQRIIQNAQKIFHIDDRKPSDLHPIYVIE  120

Query  1009  QVRSLLDRLLVVRGDDPISREAQENATMLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGA  1068
              VR LLDRL+VVRGDDP+S+EAQENAT+LFK  LRSRLA +R++ EY +NK AF  VLG 
Sbjct  121   GVRELLDRLVVVRGDDPLSKEAQENATLLFKILLRSRLASKRVLEEYRLNKEAFDWVLGE  180

Query  1069  IESRFAKA  1076
             IESRF +A
Sbjct  181   IESRFLQA  188


>CDD:461510 pfam04990, RNA_pol_Rpb1_7, RNA polymerase Rpb1, domain 7.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 7, represents a mobile 
module of the RNA polymerase. Domain 7 forms a substantial 
interaction with the lobe domain of Rpb2 (pfam04561).
Length=136

 Score = 212 bits (543),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 79/136 (58%), Positives = 105/136 (77%), Gaps = 2/136 (1%)

Query  1161  TSLRSVTEATEIYYDPDIQTTVIENDRDMVESYFIIPEDVTDATSRQSKWLLRIILSRPK  1220
             T+LRSVT ATEIYYDPD + TVIE DR+ VESYF IP++  +   RQS WLLRI L R K
Sbjct  1     TTLRSVTAATEIYYDPDPRNTVIEEDREFVESYFEIPDEDVEDLDRQSPWLLRIELDRKK  60

Query  1221  LLDKGLTVQDVAAKIKQAYPKDIAVIFSDNNADEQVIRIRQIQDYKEDEDDEDIEYD--V  1278
             +LDKGLT++DVA KIK+ +  D+ VIFSD+NA++ VIRIR I D KE +++++ + +  V
Sbjct  61    MLDKGLTMEDVAEKIKEEFGNDLFVIFSDDNAEKLVIRIRIINDEKEKDEEQEDKAEDDV  120

Query  1279  TLKKLEQHLLDTLTLR  1294
              LK+LE ++LD+LTLR
Sbjct  121   FLKRLEANMLDSLTLR  136


>CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 3, represents the pore 
domain. The 3' end of RNA is positioned close to this domain. 
The pore delimited by this domain is thought to act as 
a channel through which nucleotides enter the active site and/or 
where the 3' end of the RNA may be extruded during back-tracking.
Length=158

 Score = 194 bits (496),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 68/166 (41%), Positives = 96/166 (58%), Gaps = 9/166 (5%)

Query  525  NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIMLWVPDWDGVIPPPAILKP-  583
            NI+SPQ   P++G  QD + G Y + R D F  +E+VM ++++      V+P PAILKP 
Sbjct  1    NILSPQNGKPIIGPSQDMVLGAYLLTREDTFFDREEVMQLLMYGI----VLPHPAILKPI  56

Query  584  RPRWTGKQMISMALPSGLNLLRVEKDNSSLAEKFSPLTDGGLLIHGGQLMYGMFSKKTVG  643
            +P WTGKQ  S  LP+ +N     K N    E+     D  +LI+ G+L+ G+  KKTVG
Sbjct  57   KPLWTGKQTFSRLLPNEINPKGKPKTN----EEDLCENDSYVLINNGELISGVIDKKTVG  112

Query  644  ASGGGVIHTIFNEYGPDTAVAFFNGAQTIVNYWLLHNGFSIGIGDT  689
             S G +IH I+ EYGP+    F +  Q +   +L  +GFSIGI D 
Sbjct  113  KSLGSLIHIIYKEYGPEETAKFLDRLQKLGFRYLTKSGFSIGIDDI  158


>CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 4, represents the funnel 
domain. The funnel contain the binding site for some elongation 
factors.
Length=108

 Score = 155 bits (394),  Expect = 9e-45, Method: Composition-based stats.
 Identities = 61/108 (56%), Positives = 73/108 (68%), Gaps = 0/108 (0%)

Query  713  ITASATENTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSK  772
            IT +     LE + GM + E+FE+ ++  LN ARD AG+   KSL   N+   MA SG+K
Sbjct  1    ITDAERYGKLEDIWGMTLEESFEALINNILNKARDPAGNIASKSLDPNNSIYMMADSGAK  60

Query  773  GSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFV  820
            GS INISQ+    GQQ+VEGKRIPFGF  RTLPHF KDD  PESRGFV
Sbjct  61   GSIINISQIAGCRGQQNVEGKRIPFGFSGRTLPHFKKDDEGPESRGFV  108


>CDD:282904 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein 
(BLLF1).  This family consists of the BLLF1 viral 
late glycoprotein, also termed gp350/220. It is the most abundantly 
expressed glycoprotein in the viral envelope of the 
Herpesviruses and is the major antigen responsible for stimulating 
the production of neutralising antibodies in vivo.
Length=886

 Score = 81.9 bits (201),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 77/262 (29%), Positives = 108/262 (41%), Gaps = 41/262 (16%)

Query  1504  ATQYDTGSPMQESAFIGTPD-----PESAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPA  1558
             A +  T SP   +     P+     P S   P       S G      PT       SP 
Sbjct  424   APESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTG------PTVSTADVTSPT  477

Query  1559  -ATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSP-RFMTSPGFSPASPSFAPT  1616
              A + +G SP +P S +P   G    +          +TSP   +T+P  +  SP+ A T
Sbjct  478   PAGTTSGASPVTP-SPSPRDNGTESKAPD--------MTSPTSAVTTPTPNATSPTPAVT  528

Query  1617  SPAYSPTSPAYGQASPTSPSYSPTSPGFSP----TSPNYSPTSPSFSPASPAFSPTSPSY  1672
             +P  + TSP  G+ SPTS   +PT    SP    T+P  + T P+    SP  + T+P+ 
Sbjct  529   TPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTP  588

Query  1673  SPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPG  1732
             + TSP +G        TSP +     T  G S T P   SP  P  A S  + G      
Sbjct  589   NATSPTVG-------ETSPQANTTNHTLGGTSST-PVVTSP--PKNATSAVTTGQHNITS  638

Query  1733  YSPTSPAFSPSYV-----PSSS  1749
              S +S +  PS +     PS+S
Sbjct  639   SSTSSMSLRPSSISETLSPSTS  660


 Score = 65.3 bits (158),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 96/244 (39%), Gaps = 34/244 (14%)

Query  1503  AATQYDTGSPMQESAFIGTPDPESAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPAATSP  1562
             AA    TG P           P S    +  A   SP       P G   G  SP   SP
Sbjct  440   AAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSP------TPAGTTSGA-SPVTPSP  492

Query  1563  A----GYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSPRFMTSPGFSPASPSFAPTSP  1618
             +    G    +P   +PTS   +PT + +  +P +   +P   TSP     SP+ A T+P
Sbjct  493   SPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPN-ATSPTLGKTSPTSAVTTP  551

Query  1619  AYSPTSPAYGQASPTS----PSY---SPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPS  1671
               + TSP     +PT     P+    SPTS   +PT PN +         SP    TSP 
Sbjct  552   TPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPT-PNAT---------SPTVGETSPQ  601

Query  1672  YSPTSPAIGGAGRHLSPTSPTSPKYTPTSPGW-----SPTSPQTYSPTSPNFAGSPTSPG  1726
              + T+  +GG       TSP     +  + G      S TS  +  P+S +   SP++  
Sbjct  602   ANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPSTSD  661

Query  1727  GPTS  1730
               TS
Sbjct  662   NSTS  665


>CDD:465341 pfam17061, PARM, PARM.  Human PARM-1 is a mucin-like, androgen-regulated 
transmembrane protein that is present in most tissues, 
with high levels in the heart, kidney and placenta. It 
has been shown to be induced and expressed in prostate after 
castration and may have a role in cell proliferation and 
immortalisation in prostate cancer.
Length=296

 Score = 65.7 bits (160),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 62/184 (34%), Positives = 81/184 (44%), Gaps = 35/184 (19%)

Query  1557  PAATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSPRFMTSPGFSPAS-PSFAP  1615
               +TSPA  S     S +P+ PG SPTSS      G+ +T      S G    S P+   
Sbjct  74    EESTSPA--SNWEGTSTDPSPPGLSPTSS------GVHLTPTPEEHSSGTPETSVPATGS  125

Query  1616  TSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPT  1675
              SPA SPT       SP +P+ SP+SP  SP  P  S  S + +  S   + T P+ +PT
Sbjct  126   QSPAESPTLT-----SPQAPASSPSSPSTSP--PEVSSASVTTNH-SSTETSTQPTGAPT  177

Query  1676  SPAIGGAGRHLSPTSPTSPKYTPTS-----PGWSPTSPQTYSPTSPNFAGSPTSP--GGP  1728
             +P         SPT   S  +TPTS     P  + T+PQT   T P+             
Sbjct  178   TPE--------SPTEEHSSGHTPTSHATSEPVPTETTPQT---TVPSKVTCELIDTETTT  226

Query  1729  TSPG  1732
             TSP 
Sbjct  227   TSPR  230



Lambda      K        H        a         alpha
   0.316    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0723    0.140     1.90     42.6     43.6 

Effective search space used: 2206584600


Query= TCONS_00007801

Length=1747
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain...  630     0.0   
CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain...  429     2e-138
CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain...  327     5e-104
CDD:461511 pfam04992, RNA_pol_Rpb1_6, RNA polymerase Rpb1, domain...  305     7e-96 
CDD:461510 pfam04990, RNA_pol_Rpb1_7, RNA polymerase Rpb1, domain...  212     2e-64 
CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain...  194     1e-57 
CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain...  155     1e-44 
CDD:282904 pfam05109, Herpes_BLLF1, Herpes virus major outer enve...  82.3    5e-16 
CDD:465341 pfam17061, PARM, PARM. Human PARM-1 is a mucin-like, a...  65.7    1e-11 


>CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 5, represents the discontinuous 
cleft domain that is required to from the central 
cleft or channel where the DNA is bound.
Length=516

 Score = 630 bits (1626),  Expect = 0.0, Method: Composition-based stats.
 Identities = 240/605 (40%), Positives = 315/605 (52%), Gaps = 97/605 (16%)

Query  827   GLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQF  886
             GLTP EFFFH M GREGLIDTAVKTAE+GY+QR+LVKALE+++V YD TVRNS G+++QF
Sbjct  1     GLTPQEFFFHTMGGREGLIDTAVKTAESGYLQRRLVKALEDLVVTYDDTVRNSGGEIVQF  60

Query  887   IYGEDGLDGAHIENQRVDVIRCSDEKFRERFRVDLMDPERSLGPEVLEQANEIAGDVEVQ  946
             +YGEDGLD   IE Q    I  SD K  ++F+ DL+D    L    L    EI       
Sbjct  61    LYGEDGLDPLKIEKQGRFTIEFSDLKLEDKFKNDLLDDLLLLSEFSLSYKKEILVRDSKL  120

Query  947   RYLDEEWEQLLKDRAFLRTVAKEDDEMMQLPINVQRILETARSTFRIREGAISDLHPAEV  1006
                                                                         
Sbjct        ------------------------------------------------------------  

Query  1007  IPQVRSLLDRLLVVRGDDPISREAQENATMLFKAQLRSRLAFRRLVTEYSMNKLAFQHVL  1066
                            G D +S+EAQE AT+LF+  L+S L  +R+ +E + N  AF  +L
Sbjct  121   ---------------GRDRLSKEAQERATLLFELLLKSGLESKRVRSELTCNSKAFVCLL  165

Query  1067  GAIESRFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILN  1126
                   + ++  NPGE VG++AAQSIGEP TQMTLNTFHFAGV+SKNVTLGVPRLKEI+N
Sbjct  166   CYGRLLYQQSLINPGEAVGIIAAQSIGEPGTQMTLNTFHFAGVASKNVTLGVPRLKEIIN  225

Query  1127  VATNIKTPSMTVYQLPHRCHDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQTTVIEND  1186
             V+ NIK+PS+TVY       + E AK++   +E  +L SV E+ EI YDPD   T I +D
Sbjct  226   VSKNIKSPSLTVYLFDEVGRELEKAKKVYGAIEKVTLGSVVESGEILYDPDPFNTPIISD  285

Query  1187  RDMVESYFIIPEDVTDATSRQSKWLLRIILSRPKLLD-------KGLTVQDVAAKIKQAY  1239
                V  +F I ++VT+      +  L I++ R   +            V   + + K   
Sbjct  286   VKGVVKFFDIIDEVTNEEEIDPETGLLILVIRLLKILNKSIKKVVKSEVIPRSIRNKVDE  345

Query  1240  PKDIAVIFSDNNADEQVIRIRQIQDYKEDEDDEDIEYDVTLKKLEQHLLDTLTLRGVQGV  1299
              +DIA+        +   +IRQ        D+  +E D  L  L   LL  +TLRG+ G+
Sbjct  346   GRDIAIGEITAFIIKISKKIRQDTGGLRRVDELFMEEDPKLAILVASLLGNITLRGIPGI  405

Query  1300  ERAFINEKSKVRVLEDGSLFASKTDPLCKEWVLETSGSSLGEVLAVPG-VDATRTYSNQF  1358
             +R  +NE  K +V  D              WVLET G +L  VL VPG VDA R  SN  
Sbjct  406   KRILVNEDDKGKVEPD--------------WVLETEGVNLLRVLLVPGFVDAGRILSNDI  451

Query  1359  IEVFEVFGIEAARTAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRA  1418
              E+ E+ GIEAAR A+L E+  V  F G Y+N RHL L+ D MT +GY+  + RHGIN+A
Sbjct  452   HEILEILGIEAARNALLNEIRNVYRFQGIYINDRHLELIADQMTRKGYIMAIGRHGINKA  511

Query  1419  DNGAL  1423
             +  AL
Sbjct  512   ELSAL  516


>CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 1, represents the clamp 
domain, which a mobile domain involved in positioning the 
DNA, maintenance of the transcription bubble and positioning 
of the nascent RNA strand.
Length=320

 Score = 429 bits (1106),  Expect = 2e-138, Method: Composition-based stats.
 Identities = 160/347 (46%), Positives = 210/347 (61%), Gaps = 31/347 (9%)

Query  13   LRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDEQRMRPRTKGLNDPRLGTIDRQWNCETC  72
            L+ IKEIQFG+ SPEEI++ SV  V  PET +   ++P   GL D R+GTID+ + CETC
Sbjct  1    LKKIKEIQFGIASPEEIRKWSVGEVTKPETYNYGSLKPEEGGLLDERMGTIDKDYECETC  60

Query  73   EEGQKECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCGKIKADTSD----SKFLEAL  128
             + +K+CPGHFGHIELA PVFHIGF  K  K+LE VC  C K+  D       +K  + L
Sbjct  61   GKKKKDCPGHFGHIELAKPVFHIGFFKKTLKILECVCKYCSKLLLDPGKPKLFNKDKKRL  120

Query  129  RMRDPKRRFDHIWRLSKDVLICEADPPPDEDEPFSKESSKPLRRHGGCGNAQPTIRKEGI  188
             + + K     I  L K   +CE     +                G CG+ QP  RKEG+
Sbjct  121  GLENLKMGAKAILELCKKKDLCEHCGGKN----------------GVCGSQQPVSRKEGL  164

Query  189  TLVGTWKPNKSMMDEDEMQQPEKKVITPQMALNVFRNISHEDVRIMGLSNDYARPEWMII  248
             L    K +K           EK+++ P+  L +F+ IS EDV I+G +   +RPEWMI+
Sbjct  165  KLKAAIKKSKEE--------EEKEILNPEKVLKIFKRISDEDVEILGFNPSGSRPEWMIL  216

Query  249  TVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIIRANQNVQRCEQEGAPEHVVREFE  308
            TVLPVPPP +RPSV + G   G+R EDDLT+KL +II+ N  +++  + GAP H++RE  
Sbjct  217  TVLPVPPPCIRPSVQLDG---GRRAEDDLTHKLRDIIKRNNRLKKLLELGAPSHIIREEW  273

Query  309  SLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNL  355
             LLQ HVAT  DN+I G P A+QKS RP+K+I  RLKGKEGR R NL
Sbjct  274  RLLQEHVATLFDNEIPGLPPALQKSKRPLKSISQRLKGKEGRFRGNL  320


>CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 2, contains the active 
site. The invariant motif -NADFDGD- binds the active site 
magnesium ion.
Length=166

 Score = 327 bits (840),  Expect = 5e-104, Method: Composition-based stats.
 Identities = 120/166 (72%), Positives = 143/166 (86%), Gaps = 0/166 (0%)

Query  357  GKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANGPNEHPG  416
            GKRVDFSARTVI+ DPNL LDEVGVP S A+TLT+PE+VTPYNI++L+QLV NGPN +PG
Sbjct  1    GKRVDFSARTVISPDPNLKLDEVGVPISFAKTLTFPEIVTPYNIKRLRQLVENGPNVYPG  60

Query  417  ARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDIILFNRQPSLHKESMMGHRVR  476
            A YI+R NG R DLR+ +R   ++L  G  VERH++DGD++LFNRQPSLH+ S+MGHRVR
Sbjct  61   ANYIIRINGARRDLRYQKRRLDKELEIGDIVERHVIDGDVVLFNRQPSLHRLSIMGHRVR  120

Query  477  VMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKQLALV  522
            V+P  TFRLNLSVTTPYNADFDGDEMNLHVPQSEE+RAE ++L LV
Sbjct  121  VLPGKTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAEAEELMLV  166


>CDD:461511 pfam04992, RNA_pol_Rpb1_6, RNA polymerase Rpb1, domain 6.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 6, represents a mobile 
module of the RNA polymerase. Domain 6 forms part of the 
shelf module. This family appears to be specific to the largest 
subunit of RNA polymerase II.
Length=188

 Score = 305 bits (783),  Expect = 7e-96, Method: Composition-based stats.
 Identities = 104/188 (55%), Positives = 135/188 (72%), Gaps = 4/188 (2%)

Query  893   LDGAHIENQRVDVIRCSDEKFRERFRVDLMDPERSLGPEVLEQAN--EIAGDVEVQRYLD  950
             LDGA IE Q++D ++ SD  F +R+R+D+MD +    P  LE+    EIAGD EVQ+ LD
Sbjct  1     LDGAFIEKQKIDTLKLSDAAFEKRYRLDVMDEKSGFLPGYLEEGVIKEIAGDPEVQQLLD  60

Query  951   EEWEQLLKDRAFLRTV--AKEDDEMMQLPINVQRILETARSTFRIREGAISDLHPAEVIP  1008
             EE+EQLL+DR  LR +     D ++ QLP+N+QRI++ A+  F I +   SDLHP  VI 
Sbjct  61    EEYEQLLEDRELLREIIFPTGDSKVPQLPVNIQRIIQNAQKIFHIDDRKPSDLHPIYVIE  120

Query  1009  QVRSLLDRLLVVRGDDPISREAQENATMLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGA  1068
              VR LLDRL+VVRGDDP+S+EAQENAT+LFK  LRSRLA +R++ EY +NK AF  VLG 
Sbjct  121   GVRELLDRLVVVRGDDPLSKEAQENATLLFKILLRSRLASKRVLEEYRLNKEAFDWVLGE  180

Query  1069  IESRFAKA  1076
             IESRF +A
Sbjct  181   IESRFLQA  188


>CDD:461510 pfam04990, RNA_pol_Rpb1_7, RNA polymerase Rpb1, domain 7.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 7, represents a mobile 
module of the RNA polymerase. Domain 7 forms a substantial 
interaction with the lobe domain of Rpb2 (pfam04561).
Length=136

 Score = 212 bits (543),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 79/136 (58%), Positives = 105/136 (77%), Gaps = 2/136 (1%)

Query  1161  TSLRSVTEATEIYYDPDIQTTVIENDRDMVESYFIIPEDVTDATSRQSKWLLRIILSRPK  1220
             T+LRSVT ATEIYYDPD + TVIE DR+ VESYF IP++  +   RQS WLLRI L R K
Sbjct  1     TTLRSVTAATEIYYDPDPRNTVIEEDREFVESYFEIPDEDVEDLDRQSPWLLRIELDRKK  60

Query  1221  LLDKGLTVQDVAAKIKQAYPKDIAVIFSDNNADEQVIRIRQIQDYKEDEDDEDIEYD--V  1278
             +LDKGLT++DVA KIK+ +  D+ VIFSD+NA++ VIRIR I D KE +++++ + +  V
Sbjct  61    MLDKGLTMEDVAEKIKEEFGNDLFVIFSDDNAEKLVIRIRIINDEKEKDEEQEDKAEDDV  120

Query  1279  TLKKLEQHLLDTLTLR  1294
              LK+LE ++LD+LTLR
Sbjct  121   FLKRLEANMLDSLTLR  136


>CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 3, represents the pore 
domain. The 3' end of RNA is positioned close to this domain. 
The pore delimited by this domain is thought to act as 
a channel through which nucleotides enter the active site and/or 
where the 3' end of the RNA may be extruded during back-tracking.
Length=158

 Score = 194 bits (496),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 68/166 (41%), Positives = 96/166 (58%), Gaps = 9/166 (5%)

Query  525  NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIMLWVPDWDGVIPPPAILKP-  583
            NI+SPQ   P++G  QD + G Y + R D F  +E+VM ++++      V+P PAILKP 
Sbjct  1    NILSPQNGKPIIGPSQDMVLGAYLLTREDTFFDREEVMQLLMYGI----VLPHPAILKPI  56

Query  584  RPRWTGKQMISMALPSGLNLLRVEKDNSSLAEKFSPLTDGGLLIHGGQLMYGMFSKKTVG  643
            +P WTGKQ  S  LP+ +N     K N    E+     D  +LI+ G+L+ G+  KKTVG
Sbjct  57   KPLWTGKQTFSRLLPNEINPKGKPKTN----EEDLCENDSYVLINNGELISGVIDKKTVG  112

Query  644  ASGGGVIHTIFNEYGPDTAVAFFNGAQTIVNYWLLHNGFSIGIGDT  689
             S G +IH I+ EYGP+    F +  Q +   +L  +GFSIGI D 
Sbjct  113  KSLGSLIHIIYKEYGPEETAKFLDRLQKLGFRYLTKSGFSIGIDDI  158


>CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 4, represents the funnel 
domain. The funnel contain the binding site for some elongation 
factors.
Length=108

 Score = 155 bits (394),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 61/108 (56%), Positives = 73/108 (68%), Gaps = 0/108 (0%)

Query  713  ITASATENTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSK  772
            IT +     LE + GM + E+FE+ ++  LN ARD AG+   KSL   N+   MA SG+K
Sbjct  1    ITDAERYGKLEDIWGMTLEESFEALINNILNKARDPAGNIASKSLDPNNSIYMMADSGAK  60

Query  773  GSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFV  820
            GS INISQ+    GQQ+VEGKRIPFGF  RTLPHF KDD  PESRGFV
Sbjct  61   GSIINISQIAGCRGQQNVEGKRIPFGFSGRTLPHFKKDDEGPESRGFV  108


>CDD:282904 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein 
(BLLF1).  This family consists of the BLLF1 viral 
late glycoprotein, also termed gp350/220. It is the most abundantly 
expressed glycoprotein in the viral envelope of the 
Herpesviruses and is the major antigen responsible for stimulating 
the production of neutralising antibodies in vivo.
Length=886

 Score = 82.3 bits (202),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 75/252 (30%), Positives = 104/252 (41%), Gaps = 36/252 (14%)

Query  1504  ATQYDTGSPMQESAFIGTPD-----PESAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPA  1558
             A +  T SP   +     P+     P S   P       S G      PT       SP 
Sbjct  424   APESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTG------PTVSTADVTSPT  477

Query  1559  -ATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSP-RFMTSPGFSPASPSFAPT  1616
              A + +G SP +P S +P   G    +          +TSP   +T+P  +  SP+ A T
Sbjct  478   PAGTTSGASPVTP-SPSPRDNGTESKAPD--------MTSPTSAVTTPTPNATSPTPAVT  528

Query  1617  SPAYSPTSPAYGQASPTSPSYSPTSPGFSP----TSPNYSPTSPSFSPASPAFSPTSPSY  1672
             +P  + TSP  G+ SPTS   +PT    SP    T+P  + T P+    SP  + T+P+ 
Sbjct  529   TPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTP  588

Query  1673  SPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPG  1732
             + TSP +G        TSP +     T  G S T P   SP  P  A S  + G      
Sbjct  589   NATSPTVG-------ETSPQANTTNHTLGGTSST-PVVTSP--PKNATSAVTTGQHNITS  638

Query  1733  YSPTSPAFSPSS  1744
              S +S +  PSS
Sbjct  639   SSTSSMSLRPSS  650


 Score = 77.3 bits (189),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 98/237 (41%), Gaps = 20/237 (8%)

Query  1503  AATQYDTGSPMQESAFIGTPDPESAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPAATSP  1562
             AA    TG P           P S    +  A   SP       P G   G  SP   SP
Sbjct  440   AAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSP------TPAGTTSGA-SPVTPSP  492

Query  1563  A----GYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSPRFMTSPGFSPASPSFAPTSP  1618
             +    G    +P   +PTS   +PT + +  +P +   +P   TSP     SP+ A T+P
Sbjct  493   SPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPN-ATSPTLGKTSPTSAVTTP  551

Query  1619  AYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPA  1678
               + TSP     + T+P+ + T P    TSP  + T+P+ +  SP    TSP  + T+  
Sbjct  552   TPNATSPT---PAVTTPTPNATIPTLGKTSPTSAVTTPTPNATSPTVGETSPQANTTNHT  608

Query  1679  IGGAGRHLSPTSPTSPKYTPTSPGW-----SPTSPQTYSPTSPNFAGSPTSPGGPTS  1730
             +GG       TSP     +  + G      S TS  +  P+S +   SP++    TS
Sbjct  609   LGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPSTSDNSTS  665


>CDD:465341 pfam17061, PARM, PARM.  Human PARM-1 is a mucin-like, androgen-regulated 
transmembrane protein that is present in most tissues, 
with high levels in the heart, kidney and placenta. It 
has been shown to be induced and expressed in prostate after 
castration and may have a role in cell proliferation and 
immortalisation in prostate cancer.
Length=296

 Score = 65.7 bits (160),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 62/184 (34%), Positives = 81/184 (44%), Gaps = 35/184 (19%)

Query  1557  PAATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSPRFMTSPGFSPAS-PSFAP  1615
               +TSPA  S     S +P+ PG SPTSS      G+ +T      S G    S P+   
Sbjct  74    EESTSPA--SNWEGTSTDPSPPGLSPTSS------GVHLTPTPEEHSSGTPETSVPATGS  125

Query  1616  TSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPT  1675
              SPA SPT       SP +P+ SP+SP  SP  P  S  S + +  S   + T P+ +PT
Sbjct  126   QSPAESPTLT-----SPQAPASSPSSPSTSP--PEVSSASVTTNH-SSTETSTQPTGAPT  177

Query  1676  SPAIGGAGRHLSPTSPTSPKYTPTS-----PGWSPTSPQTYSPTSPNFAGSPTSP--GGP  1728
             +P         SPT   S  +TPTS     P  + T+PQT   T P+             
Sbjct  178   TPE--------SPTEEHSSGHTPTSHATSEPVPTETTPQT---TVPSKVTCELIDTETTT  226

Query  1729  TSPG  1732
             TSP 
Sbjct  227   TSPR  230



Lambda      K        H        a         alpha
   0.316    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2202572628


Query= TCONS_00002529

Length=1621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain...  630     0.0   
CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain...  327     4e-104
CDD:461511 pfam04992, RNA_pol_Rpb1_6, RNA polymerase Rpb1, domain...  305     6e-96 
CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain...  240     2e-71 
CDD:461510 pfam04990, RNA_pol_Rpb1_7, RNA polymerase Rpb1, domain...  213     2e-64 
CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain...  194     1e-57 
CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain...  155     1e-44 
CDD:282904 pfam05109, Herpes_BLLF1, Herpes virus major outer enve...  80.7    1e-15 
CDD:465341 pfam17061, PARM, PARM. Human PARM-1 is a mucin-like, a...  64.5    3e-11 


>CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 5, represents the discontinuous 
cleft domain that is required to from the central 
cleft or channel where the DNA is bound.
Length=516

 Score = 630 bits (1626),  Expect = 0.0, Method: Composition-based stats.
 Identities = 240/605 (40%), Positives = 315/605 (52%), Gaps = 97/605 (16%)

Query  698   GLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQF  757
             GLTP EFFFH M GREGLIDTAVKTAE+GY+QR+LVKALE+++V YD TVRNS G+++QF
Sbjct  1     GLTPQEFFFHTMGGREGLIDTAVKTAESGYLQRRLVKALEDLVVTYDDTVRNSGGEIVQF  60

Query  758   IYGEDGLDGAHIENQRVDVIRCSDEKFRERFRVDLMDPERSLGPEVLEQANEIAGDVEVQ  817
             +YGEDGLD   IE Q    I  SD K  ++F+ DL+D    L    L    EI       
Sbjct  61    LYGEDGLDPLKIEKQGRFTIEFSDLKLEDKFKNDLLDDLLLLSEFSLSYKKEILVRDSKL  120

Query  818   RYLDEEWEQLLKDRAFLRTVAKEDDEMMQLPINVQRILETARSTFRIREGAISDLHPAEV  877
                                                                         
Sbjct        ------------------------------------------------------------  

Query  878   IPQVRSLLDRLLVVRGDDPISREAQENATMLFKAQLRSRLAFRRLVTEYSMNKLAFQHVL  937
                            G D +S+EAQE AT+LF+  L+S L  +R+ +E + N  AF  +L
Sbjct  121   ---------------GRDRLSKEAQERATLLFELLLKSGLESKRVRSELTCNSKAFVCLL  165

Query  938   GAIESRFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILN  997
                   + ++  NPGE VG++AAQSIGEP TQMTLNTFHFAGV+SKNVTLGVPRLKEI+N
Sbjct  166   CYGRLLYQQSLINPGEAVGIIAAQSIGEPGTQMTLNTFHFAGVASKNVTLGVPRLKEIIN  225

Query  998   VATNIKTPSMTVYQLPHRCHDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQTTVIEND  1057
             V+ NIK+PS+TVY       + E AK++   +E  +L SV E+ EI YDPD   T I +D
Sbjct  226   VSKNIKSPSLTVYLFDEVGRELEKAKKVYGAIEKVTLGSVVESGEILYDPDPFNTPIISD  285

Query  1058  RDMVESYFIIPEDVTDATSRQSKWLLRIILSRPKLLD-------KGLTVQDVAAKIKQAY  1110
                V  +F I ++VT+      +  L I++ R   +            V   + + K   
Sbjct  286   VKGVVKFFDIIDEVTNEEEIDPETGLLILVIRLLKILNKSIKKVVKSEVIPRSIRNKVDE  345

Query  1111  PKDIAVIFSDNNADEQVIRIRQIQDYKEDEDDEDIEYDVTLKKLEQHLLDTLTLRGVQGV  1170
              +DIA+        +   +IRQ        D+  +E D  L  L   LL  +TLRG+ G+
Sbjct  346   GRDIAIGEITAFIIKISKKIRQDTGGLRRVDELFMEEDPKLAILVASLLGNITLRGIPGI  405

Query  1171  ERAFINEKSKVRVLEDGSLFASKTDPLCKEWVLETSGSSLGEVLAVPG-VDATRTYSNQF  1229
             +R  +NE  K +V  D              WVLET G +L  VL VPG VDA R  SN  
Sbjct  406   KRILVNEDDKGKVEPD--------------WVLETEGVNLLRVLLVPGFVDAGRILSNDI  451

Query  1230  IEVFEVFGIEAARTAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRA  1289
              E+ E+ GIEAAR A+L E+  V  F G Y+N RHL L+ D MT +GY+  + RHGIN+A
Sbjct  452   HEILEILGIEAARNALLNEIRNVYRFQGIYINDRHLELIADQMTRKGYIMAIGRHGINKA  511

Query  1290  DNGAL  1294
             +  AL
Sbjct  512   ELSAL  516


>CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 2, contains the active 
site. The invariant motif -NADFDGD- binds the active site 
magnesium ion.
Length=166

 Score = 327 bits (840),  Expect = 4e-104, Method: Composition-based stats.
 Identities = 120/166 (72%), Positives = 143/166 (86%), Gaps = 0/166 (0%)

Query  228  GKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANGPNEHPG  287
            GKRVDFSARTVI+ DPNL LDEVGVP S A+TLT+PE+VTPYNI++L+QLV NGPN +PG
Sbjct  1    GKRVDFSARTVISPDPNLKLDEVGVPISFAKTLTFPEIVTPYNIKRLRQLVENGPNVYPG  60

Query  288  ARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDIILFNRQPSLHKESMMGHRVR  347
            A YI+R NG R DLR+ +R   ++L  G  VERH++DGD++LFNRQPSLH+ S+MGHRVR
Sbjct  61   ANYIIRINGARRDLRYQKRRLDKELEIGDIVERHVIDGDVVLFNRQPSLHRLSIMGHRVR  120

Query  348  VMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKQLALV  393
            V+P  TFRLNLSVTTPYNADFDGDEMNLHVPQSEE+RAE ++L LV
Sbjct  121  VLPGKTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAEAEELMLV  166


>CDD:461511 pfam04992, RNA_pol_Rpb1_6, RNA polymerase Rpb1, domain 6.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 6, represents a mobile 
module of the RNA polymerase. Domain 6 forms part of the 
shelf module. This family appears to be specific to the largest 
subunit of RNA polymerase II.
Length=188

 Score = 305 bits (783),  Expect = 6e-96, Method: Composition-based stats.
 Identities = 104/188 (55%), Positives = 135/188 (72%), Gaps = 4/188 (2%)

Query  764  LDGAHIENQRVDVIRCSDEKFRERFRVDLMDPERSLGPEVLEQAN--EIAGDVEVQRYLD  821
            LDGA IE Q++D ++ SD  F +R+R+D+MD +    P  LE+    EIAGD EVQ+ LD
Sbjct  1    LDGAFIEKQKIDTLKLSDAAFEKRYRLDVMDEKSGFLPGYLEEGVIKEIAGDPEVQQLLD  60

Query  822  EEWEQLLKDRAFLRTV--AKEDDEMMQLPINVQRILETARSTFRIREGAISDLHPAEVIP  879
            EE+EQLL+DR  LR +     D ++ QLP+N+QRI++ A+  F I +   SDLHP  VI 
Sbjct  61   EEYEQLLEDRELLREIIFPTGDSKVPQLPVNIQRIIQNAQKIFHIDDRKPSDLHPIYVIE  120

Query  880  QVRSLLDRLLVVRGDDPISREAQENATMLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGA  939
             VR LLDRL+VVRGDDP+S+EAQENAT+LFK  LRSRLA +R++ EY +NK AF  VLG 
Sbjct  121  GVRELLDRLVVVRGDDPLSKEAQENATLLFKILLRSRLASKRVLEEYRLNKEAFDWVLGE  180

Query  940  IESRFAKA  947
            IESRF +A
Sbjct  181  IESRFLQA  188


>CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 1, represents the clamp 
domain, which a mobile domain involved in positioning the 
DNA, maintenance of the transcription bubble and positioning 
of the nascent RNA strand.
Length=320

 Score = 240 bits (614),  Expect = 2e-71, Method: Composition-based stats.
 Identities = 98/226 (43%), Positives = 131/226 (58%), Gaps = 27/226 (12%)

Query  1    MRDPKRRFDHIWRLSKDVLICEADPPPDEDEPFSKESSKPLRRHGGCGNAQPTIRKEGIT  60
            + + K     I  L K   +CE     +                G CG+ QP  RKEG+ 
Sbjct  122  LENLKMGAKAILELCKKKDLCEHCGGKN----------------GVCGSQQPVSRKEGLK  165

Query  61   LVGTWKPNKSMMDEDEMQQPEKKVITPQMALNVFRNISHEDVRIMGLSNDYARPEWMIIT  120
            L    K +K           EK+++ P+  L +F+ IS EDV I+G +   +RPEWMI+T
Sbjct  166  LKAAIKKSKEE--------EEKEILNPEKVLKIFKRISDEDVEILGFNPSGSRPEWMILT  217

Query  121  VLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIIRANQNVQRCEQEGAPEHVVREFES  180
            VLPVPPP +RPSV + G   G+R EDDLT+KL +II+ N  +++  + GAP H++RE   
Sbjct  218  VLPVPPPCIRPSVQLDG---GRRAEDDLTHKLRDIIKRNNRLKKLLELGAPSHIIREEWR  274

Query  181  LLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNL  226
            LLQ HVAT  DN+I G P A+QKS RP+K+I  RLKGKEGR R NL
Sbjct  275  LLQEHVATLFDNEIPGLPPALQKSKRPLKSISQRLKGKEGRFRGNL  320


>CDD:461510 pfam04990, RNA_pol_Rpb1_7, RNA polymerase Rpb1, domain 7.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 7, represents a mobile 
module of the RNA polymerase. Domain 7 forms a substantial 
interaction with the lobe domain of Rpb2 (pfam04561).
Length=136

 Score = 213 bits (544),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 79/136 (58%), Positives = 105/136 (77%), Gaps = 2/136 (1%)

Query  1032  TSLRSVTEATEIYYDPDIQTTVIENDRDMVESYFIIPEDVTDATSRQSKWLLRIILSRPK  1091
             T+LRSVT ATEIYYDPD + TVIE DR+ VESYF IP++  +   RQS WLLRI L R K
Sbjct  1     TTLRSVTAATEIYYDPDPRNTVIEEDREFVESYFEIPDEDVEDLDRQSPWLLRIELDRKK  60

Query  1092  LLDKGLTVQDVAAKIKQAYPKDIAVIFSDNNADEQVIRIRQIQDYKEDEDDEDIEYD--V  1149
             +LDKGLT++DVA KIK+ +  D+ VIFSD+NA++ VIRIR I D KE +++++ + +  V
Sbjct  61    MLDKGLTMEDVAEKIKEEFGNDLFVIFSDDNAEKLVIRIRIINDEKEKDEEQEDKAEDDV  120

Query  1150  TLKKLEQHLLDTLTLR  1165
              LK+LE ++LD+LTLR
Sbjct  121   FLKRLEANMLDSLTLR  136


>CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 3, represents the pore 
domain. The 3' end of RNA is positioned close to this domain. 
The pore delimited by this domain is thought to act as 
a channel through which nucleotides enter the active site and/or 
where the 3' end of the RNA may be extruded during back-tracking.
Length=158

 Score = 194 bits (496),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 68/166 (41%), Positives = 96/166 (58%), Gaps = 9/166 (5%)

Query  396  NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIMLWVPDWDGVIPPPAILKP-  454
            NI+SPQ   P++G  QD + G Y + R D F  +E+VM ++++      V+P PAILKP 
Sbjct  1    NILSPQNGKPIIGPSQDMVLGAYLLTREDTFFDREEVMQLLMYGI----VLPHPAILKPI  56

Query  455  RPRWTGKQMISMALPSGLNLLRVEKDNSSLAEKFSPLTDGGLLIHGGQLMYGMFSKKTVG  514
            +P WTGKQ  S  LP+ +N     K N    E+     D  +LI+ G+L+ G+  KKTVG
Sbjct  57   KPLWTGKQTFSRLLPNEINPKGKPKTN----EEDLCENDSYVLINNGELISGVIDKKTVG  112

Query  515  ASGGGVIHTIFNEYGPDTAVAFFNGAQTIVNYWLLHNGFSIGIGDT  560
             S G +IH I+ EYGP+    F +  Q +   +L  +GFSIGI D 
Sbjct  113  KSLGSLIHIIYKEYGPEETAKFLDRLQKLGFRYLTKSGFSIGIDDI  158


>CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 4, represents the funnel 
domain. The funnel contain the binding site for some elongation 
factors.
Length=108

 Score = 155 bits (394),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 61/108 (56%), Positives = 73/108 (68%), Gaps = 0/108 (0%)

Query  584  ITASATENTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSK  643
            IT +     LE + GM + E+FE+ ++  LN ARD AG+   KSL   N+   MA SG+K
Sbjct  1    ITDAERYGKLEDIWGMTLEESFEALINNILNKARDPAGNIASKSLDPNNSIYMMADSGAK  60

Query  644  GSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFV  691
            GS INISQ+    GQQ+VEGKRIPFGF  RTLPHF KDD  PESRGFV
Sbjct  61   GSIINISQIAGCRGQQNVEGKRIPFGFSGRTLPHFKKDDEGPESRGFV  108


>CDD:282904 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein 
(BLLF1).  This family consists of the BLLF1 viral 
late glycoprotein, also termed gp350/220. It is the most abundantly 
expressed glycoprotein in the viral envelope of the 
Herpesviruses and is the major antigen responsible for stimulating 
the production of neutralising antibodies in vivo.
Length=886

 Score = 80.7 bits (198),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 77/262 (29%), Positives = 108/262 (41%), Gaps = 41/262 (16%)

Query  1375  ATQYDTGSPMQESAFIGTPD-----PESAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPA  1429
             A +  T SP   +     P+     P S   P       S G      PT       SP 
Sbjct  424   APESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTG------PTVSTADVTSPT  477

Query  1430  -ATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSP-RFMTSPGFSPASPSFAPT  1487
              A + +G SP +P S +P   G    +          +TSP   +T+P  +  SP+ A T
Sbjct  478   PAGTTSGASPVTP-SPSPRDNGTESKAPD--------MTSPTSAVTTPTPNATSPTPAVT  528

Query  1488  SPAYSPTSPAYGQASPTSPSYSPTSPGFSP----TSPNYSPTSPSFSPASPAFSPTSPSY  1543
             +P  + TSP  G+ SPTS   +PT    SP    T+P  + T P+    SP  + T+P+ 
Sbjct  529   TPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTP  588

Query  1544  SPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPG  1603
             + TSP +G        TSP +     T  G S T P   SP  P  A S  + G      
Sbjct  589   NATSPTVG-------ETSPQANTTNHTLGGTSST-PVVTSP--PKNATSAVTTGQHNITS  638

Query  1604  YSPTSPAFSPSYV-----PSSS  1620
              S +S +  PS +     PS+S
Sbjct  639   SSTSSMSLRPSSISETLSPSTS  660


>CDD:465341 pfam17061, PARM, PARM.  Human PARM-1 is a mucin-like, androgen-regulated 
transmembrane protein that is present in most tissues, 
with high levels in the heart, kidney and placenta. It 
has been shown to be induced and expressed in prostate after 
castration and may have a role in cell proliferation and 
immortalisation in prostate cancer.
Length=296

 Score = 64.5 bits (157),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 62/184 (34%), Positives = 81/184 (44%), Gaps = 35/184 (19%)

Query  1428  PAATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSPRFMTSPGFSPAS-PSFAP  1486
               +TSPA  S     S +P+ PG SPTSS      G+ +T      S G    S P+   
Sbjct  74    EESTSPA--SNWEGTSTDPSPPGLSPTSS------GVHLTPTPEEHSSGTPETSVPATGS  125

Query  1487  TSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPT  1546
              SPA SPT       SP +P+ SP+SP  SP  P  S  S + +  S   + T P+ +PT
Sbjct  126   QSPAESPTLT-----SPQAPASSPSSPSTSP--PEVSSASVTTNH-SSTETSTQPTGAPT  177

Query  1547  SPAIGGAGRHLSPTSPTSPKYTPTS-----PGWSPTSPQTYSPTSPNFAGSPTSP--GGP  1599
             +P         SPT   S  +TPTS     P  + T+PQT   T P+             
Sbjct  178   TPE--------SPTEEHSSGHTPTSHATSEPVPTETTPQT---TVPSKVTCELIDTETTT  226

Query  1600  TSPG  1603
             TSP 
Sbjct  227   TSPR  230



Lambda      K        H        a         alpha
   0.315    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2065296164


Query= TCONS_00007803

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00007804

Length=842


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1072328958


Query= TCONS_00002530

Length=842


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1072328958


Query= TCONS_00002531

Length=739


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 938573040


Query= TCONS_00002532

Length=743


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 944393648


Query= TCONS_00002533

Length=852


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1086684098


Query= TCONS_00002534

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.122    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00007807

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1      93.5    2e-24


>CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1.  
Length=453

 Score = 93.5 bits (233),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 41/87 (47%), Positives = 50/87 (57%), Gaps = 13/87 (15%)

Query  1    MFNAFGSKVKYWITFNEPWCSSVLGYNVGQFAPGRTSDRTKSPVGDGSREPWIVGHNILV  60
             F  FG +VKYW+TFNEPWC+S LGY  G+ APG           D    P+   H+IL+
Sbjct  149  CFKRFGDRVKYWLTFNEPWCASWLGYGTGEHAPG----------KDDGEAPYQAAHHILL  198

Query  61   AHGAAVKIYREEFKPRDGGEIGITLNG  87
            AH  AVK+YRE       G+IGI LN 
Sbjct  199  AHARAVKLYREHG---PDGQIGIVLNS  222



Lambda      K        H        a         alpha
   0.318    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00002536

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            106     7e-26


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 106 bits (266),  Expect = 7e-26, Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 142/368 (39%), Gaps = 24/368 (7%)

Query  66   LYLTFVMQFLDKLSLNYASAYTLIPDLGLEGQRYSWVAAIFYFGYVFWAIPANLLIQRLP  125
            L+L   +  L +  L  A    L  DLG+       +  +F  GY      A  L  R  
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  126  LAKYMGGVIIIWAGLVIAHIGAKNYAGILVLRFLLGMAEACVSPCLMSFTSMFYKRSEQP  185
              + +   ++++A  ++  + A +   +LVLR L G+    + P  ++  + ++   E+ 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  186  LRMSLWMSGNGMATMIGALLSFGVGHSHNTNIHSWQLIFLTIGLMNFATGCLFLWLMPDS  245
              + L  +G G+   +G LL   +          W+  FL + +++       L L+P  
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASL-----FGWRAAFLILAILSLL--AAVLLLLPRP  173

Query  246  PSSAKFLTHRQRVVAVQRVSENMIGVKTKQIKPHQALEALYDPKVLFSLGIGIGCGVING  305
            P  +K     +       V                A +AL    VL+ L   +  G    
Sbjct  174  PPESKRPKPAEEARLSLIV----------------AWKALLRDPVLWLLLALLLFGFAFF  217

Query  306  GVSNFSSALIKGFGFNGIYATLLQLPTGVTQAVVVPICGLIATYVRDSRCLVLAAVCLIP  365
            G+  +     +  G + + A LL    G+  A+   + G ++  +   R L+LA + LI 
Sbjct  218  GLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLIL  277

Query  366  FGGLLGIRFTSLDHRWTLVGCTWLQYIIGAPIIVSWNLLATNVAGHTKRSMANGMWFTMF  425
                L +   +L   W L+    L       +  + N L +++A   +R  A+G++ T  
Sbjct  278  AALGLLLLSLTLSSLWLLLALLLLG-FGFGLVFPALNALVSDLAPKEERGTASGLYNTAG  336

Query  426  AAGHVAGA  433
            + G   G 
Sbjct  337  SLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 638935852


Query= TCONS_00002537

Length=619


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0721    0.140     1.90     42.6     43.6 

Effective search space used: 787563556


Query= TCONS_00007809

Length=619


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787563556


Query= TCONS_00007808

Length=619


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787563556


Query= TCONS_00007810

Length=619


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787563556


Query= TCONS_00002538

Length=619


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787563556


Query= TCONS_00002539

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460829 pfam03153, TFIIA, Transcription factor IIA, alpha/beta...  287     2e-95


>CDD:460829 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit. 
 Transcription initiation factor IIA (TFIIA) is a heterotrimer, 
the three subunits being known as alpha, beta, and gamma, 
in order of molecular weight. The N and C-terminal domains 
of the gamma subunit are represented in pfam02268 and pfam02751, 
respectively. This family represents the precursor 
that yields both the alpha and beta subunits. The TFIIA heterotrimer 
is an essential general transcription initiation factor 
for the expression of genes transcribed by RNA polymerase 
II. Together with TFIID, TFIIA binds to the promoter region; 
this is the first step in the formation of a pre-initiation 
complex (PIC). Binding of the rest of the transcription 
machinery follows this step. After initiation, the PIC does 
not completely dissociate from the promoter. Some components, 
including TFIIA, remain attached and re-initiate a subsequent 
round of transcription.
Length=344

 Score = 287 bits (736),  Expect = 2e-95, Method: Composition-based stats.
 Identities = 145/406 (36%), Positives = 191/406 (47%), Gaps = 96/406 (24%)

Query  9    VFDRVIQEVCDASQVDFEESGVDQQTLIDLRKSWQKKLSSLGVAHFPWDPAPPQPAPPQT  68
            V+  VI++V +AS+VDFEE GVD+Q L +L++ WQ KLS   VA FPWD           
Sbjct  1    VYRSVIEDVINASRVDFEEEGVDEQVLEELKQLWQSKLSQSKVAEFPWD-----------  49

Query  69   QNQILPPTAPVPSNAPRPAPPQQTQQQHVPPQQHLPQSLPGTVPPMQAPAPAHMGQQSHI  128
                                                            P P H      I
Sbjct  50   ----------------------------------------------PKPEPPHPPPFV-I  62

Query  129  KSEPGLNGQPGMPHMSNMMSAPSSNPQSARERAANMLHQRYGAAAASSVSQLQAQSHAS-  187
            K EPG+  QP     + +    +   Q A +RAA  L Q+ G+AA SS++ LQA +    
Sbjct  63   KQEPGVTLQPASGPQAQLY--KNVQAQGAAQRAAQPLQQQQGSAAQSSINALQAGASQQQ  120

Query  188  --MGLPGQQHRPQYPAQT-------PNGQTPAIKQEPGYSSAP---QPNMTNSQTDGAGA  235
              + LP QQ +PQ   Q           Q    +Q+    +     Q  + NSQTDGA  
Sbjct  121  QALALPQQQPQPQQQQQQQQQQQQQQQQQQQQQQQQQQEQAQQAPQQGGLNNSQTDGAD-  179

Query  236  DALSDWKAEVARRREAAERQ---NGEGDRFLREHLRQRMLQFEGGGLLMPLDERQSSSST  292
            DAL DW+  +A+RR A   +     E DR LRE +  R  Q  GGGL++PL E     S 
Sbjct  180  DALEDWEGVLAQRRAAGAPEELGRVEIDRMLREQIAARAKQ-MGGGLMLPLKEALKGKSR  238

Query  293  SRRERHLTDAHSAVGINSIANSAQPQAQFDGPGGDDDREEDDED-----AINSDLDDPDD  347
            +++ R    A + +            AQ DG G D D EE   +     AINSDLDDPDD
Sbjct  239  AKKSRKAPRATAEI------------AQLDGAGDDSDDEESSNEDDDEDAINSDLDDPDD  286

Query  348  LVAED-HDAEDSVGEVMLCTYDKVQRVKNKWKCTLKDGILTTGGKE  392
               +D  D ++++G VMLC YDKVQRVKNKWKCTLKDG++T  GK+
Sbjct  287  DDDDDLEDTDNALGHVMLCQYDKVQRVKNKWKCTLKDGVMTVNGKD  332



Lambda      K        H        a         alpha
   0.310    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00002540

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.141    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00002541

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus). Members...  147     1e-40


>CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus).  Members of this 
family catalyze the reduction of the 5,6-double bond of a 
uridine residue on tRNA. Dihydrouridine modification of tRNA 
is widely observed in prokaryotes and eukaryotes, and also 
in some archae. Most dihydrouridines are found in the D loop 
of t-RNAs. The role of dihydrouridine in tRNA is currently 
unknown, but may increase conformational flexibility of the 
tRNA. It is likely that different family members have different 
substrate specificities, which may overlap. Dus 1 from 
Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts 
on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single 
subunit, requiring NADPH or NADH, and is stimulated by 
the presence of FAD. Some family members may be targeted to 
the mitochondria and even have a role in mitochondria.
Length=309

 Score = 147 bits (372),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 65/291 (22%)

Query  127  TLAPLTTQGNLPFRRLCIDYGCQF-TYSEMAMGMSLIQGQKSEWALMKAHESEALPPTIS  185
             LAP+    +LPFRRL  +YG     Y+EM    + ++ +K     M +   E  P  + 
Sbjct  1    LLAPMAGVTDLPFRRLVREYGAGDLVYTEMVTAKAQLRPEKVRI-RMLSELEEPTPLAV-  58

Query  186  STADVVQGYDNSKDFKFGAQIAGNKPWHAIKATELLSRLTPNLRVIDLNCGCPIDQVFRE  245
                               Q+ G+ P    +A +L+     +   ID+N GCP  +V R 
Sbjct  59   -------------------QLGGSDPALLAEAAKLVEDRGAD--GIDINMGCPSKKVTRG  97

Query  246  GAGSALLDHPSKLEKMLRGM-NAVSEMIPITVKIRTGTRDNSPNATKLIERLVLGGHESG  304
            G G+ALL +P  + ++++ +  AV   IP+TVKIR G  D+  NA ++ +  V       
Sbjct  98   GGGAALLRNPDLVAQIVKAVVKAVG--IPVTVKIRIGWDDSHENAVEIAKI-VEDA----  150

Query  305  ILNIGPPGVAAVTLHGRSRQQRYTKMADWSYIAECAALIKRLNEKKDDVTDTVREPDERM  364
                   G  A+T+HGR+R Q Y   ADW  I +   + + ++                 
Sbjct  151  -------GAQALTVHGRTRAQNYEGTADWDAIKQ---VKQAVS-----------------  183

Query  365  LPNGGKVFFLGNGDCYSHYDYDDHINNAGVDAVMVGRGAIIKPWVFEEIQA  415
                  +  + NGD     D    +   G D VM+GRGA+  PW+F E   
Sbjct  184  ------IPVIANGDITDPEDAQRCLAYTGADGVMIGRGALGNPWLFAEQHT  228



Lambda      K        H        a         alpha
   0.317    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00007812

Length=700
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus). Members...  147     8e-40


>CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus).  Members of this 
family catalyze the reduction of the 5,6-double bond of a 
uridine residue on tRNA. Dihydrouridine modification of tRNA 
is widely observed in prokaryotes and eukaryotes, and also 
in some archae. Most dihydrouridines are found in the D loop 
of t-RNAs. The role of dihydrouridine in tRNA is currently 
unknown, but may increase conformational flexibility of the 
tRNA. It is likely that different family members have different 
substrate specificities, which may overlap. Dus 1 from 
Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts 
on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single 
subunit, requiring NADPH or NADH, and is stimulated by 
the presence of FAD. Some family members may be targeted to 
the mitochondria and even have a role in mitochondria.
Length=309

 Score = 147 bits (372),  Expect = 8e-40, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 65/291 (22%)

Query  320  TLAPLTTQGNLPFRRLCIDYGCQF-TYSEMAMGMSLIQGQKSEWALMKAHESEALPPTIS  378
             LAP+    +LPFRRL  +YG     Y+EM    + ++ +K     M +   E  P  + 
Sbjct  1    LLAPMAGVTDLPFRRLVREYGAGDLVYTEMVTAKAQLRPEKVRI-RMLSELEEPTPLAV-  58

Query  379  STADVVQGYDNSKDFKFGAQIAGNKPWHAIKATELLSRLTPNLRVIDLNCGCPIDQVFRE  438
                               Q+ G+ P    +A +L+     +   ID+N GCP  +V R 
Sbjct  59   -------------------QLGGSDPALLAEAAKLVEDRGAD--GIDINMGCPSKKVTRG  97

Query  439  GAGSALLDHPSKLEKMLRGM-NAVSEMIPITVKIRTGTRDNSPNATKLIERLVLGGHESG  497
            G G+ALL +P  + ++++ +  AV   IP+TVKIR G  D+  NA ++ +  V       
Sbjct  98   GGGAALLRNPDLVAQIVKAVVKAVG--IPVTVKIRIGWDDSHENAVEIAKI-VEDA----  150

Query  498  ILNIGPPGVAAVTLHGRSRQQRYTKMADWSYIAECAALIKRLNEKKDDVTDTVREPDERM  557
                   G  A+T+HGR+R Q Y   ADW  I +   + + ++                 
Sbjct  151  -------GAQALTVHGRTRAQNYEGTADWDAIKQ---VKQAVS-----------------  183

Query  558  LPNGGKVFFLGNGDCYSHYDYDDHINNAGVDAVMVGRGAIIKPWVFEEIQA  608
                  +  + NGD     D    +   G D VM+GRGA+  PW+F E   
Sbjct  184  ------IPVIANGDITDPEDAQRCLAYTGADGVMIGRGALGNPWLFAEQHT  228



Lambda      K        H        a         alpha
   0.315    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 895197530


Query= TCONS_00007811

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus). Members...  146     1e-40


>CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus).  Members of this 
family catalyze the reduction of the 5,6-double bond of a 
uridine residue on tRNA. Dihydrouridine modification of tRNA 
is widely observed in prokaryotes and eukaryotes, and also 
in some archae. Most dihydrouridines are found in the D loop 
of t-RNAs. The role of dihydrouridine in tRNA is currently 
unknown, but may increase conformational flexibility of the 
tRNA. It is likely that different family members have different 
substrate specificities, which may overlap. Dus 1 from 
Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts 
on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single 
subunit, requiring NADPH or NADH, and is stimulated by 
the presence of FAD. Some family members may be targeted to 
the mitochondria and even have a role in mitochondria.
Length=309

 Score = 146 bits (371),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 65/291 (22%)

Query  127  TLAPLTTQGNLPFRRLCIDYGCQF-TYSEMAMGMSLIQGQKSEWALMKAHESEALPPTIS  185
             LAP+    +LPFRRL  +YG     Y+EM    + ++ +K     M +   E  P  + 
Sbjct  1    LLAPMAGVTDLPFRRLVREYGAGDLVYTEMVTAKAQLRPEKVRI-RMLSELEEPTPLAV-  58

Query  186  STADVVQGYDNSKDFKFGAQIAGNKPWHAIKATELLSRLTPNLRVIDLNCGCPIDQVFRE  245
                               Q+ G+ P    +A +L+     +   ID+N GCP  +V R 
Sbjct  59   -------------------QLGGSDPALLAEAAKLVEDRGAD--GIDINMGCPSKKVTRG  97

Query  246  GAGSALLDHPSKLEKMLRGM-NAVSEMIPITVKIRTGTRDNSPNATKLIERLVLGGHESG  304
            G G+ALL +P  + ++++ +  AV   IP+TVKIR G  D+  NA ++ +  V       
Sbjct  98   GGGAALLRNPDLVAQIVKAVVKAVG--IPVTVKIRIGWDDSHENAVEIAKI-VEDA----  150

Query  305  ILNIGPPGVAAVTLHGRSRQQRYTKMADWSYIAECAALIKRLNEKKDDVTDTVREPDERM  364
                   G  A+T+HGR+R Q Y   ADW  I +   + + ++                 
Sbjct  151  -------GAQALTVHGRTRAQNYEGTADWDAIKQ---VKQAVS-----------------  183

Query  365  LPNGGKVFFLGNGDCYSHYDYDDHINNAGVDAVMVGRGAIIKPWVFEEIQA  415
                  +  + NGD     D    +   G D VM+GRGA+  PW+F E   
Sbjct  184  ------IPVIANGDITDPEDAQRCLAYTGADGVMIGRGALGNPWLFAEQHT  228



Lambda      K        H        a         alpha
   0.317    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00002542

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.120    0.316    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00002543

Length=726
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus). Members...  147     8e-40


>CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus).  Members of this 
family catalyze the reduction of the 5,6-double bond of a 
uridine residue on tRNA. Dihydrouridine modification of tRNA 
is widely observed in prokaryotes and eukaryotes, and also 
in some archae. Most dihydrouridines are found in the D loop 
of t-RNAs. The role of dihydrouridine in tRNA is currently 
unknown, but may increase conformational flexibility of the 
tRNA. It is likely that different family members have different 
substrate specificities, which may overlap. Dus 1 from 
Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts 
on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single 
subunit, requiring NADPH or NADH, and is stimulated by 
the presence of FAD. Some family members may be targeted to 
the mitochondria and even have a role in mitochondria.
Length=309

 Score = 147 bits (372),  Expect = 8e-40, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 65/291 (22%)

Query  320  TLAPLTTQGNLPFRRLCIDYGCQF-TYSEMAMGMSLIQGQKSEWALMKAHESEALPPTIS  378
             LAP+    +LPFRRL  +YG     Y+EM    + ++ +K     M +   E  P  + 
Sbjct  1    LLAPMAGVTDLPFRRLVREYGAGDLVYTEMVTAKAQLRPEKVRI-RMLSELEEPTPLAV-  58

Query  379  STADVVQGYDNSKDFKFGAQIAGNKPWHAIKATELLSRLTPNLRVIDLNCGCPIDQVFRE  438
                               Q+ G+ P    +A +L+     +   ID+N GCP  +V R 
Sbjct  59   -------------------QLGGSDPALLAEAAKLVEDRGAD--GIDINMGCPSKKVTRG  97

Query  439  GAGSALLDHPSKLEKMLRGM-NAVSEMIPITVKIRTGTRDNSPNATKLIERLVLGGHESG  497
            G G+ALL +P  + ++++ +  AV   IP+TVKIR G  D+  NA ++ +  V       
Sbjct  98   GGGAALLRNPDLVAQIVKAVVKAVG--IPVTVKIRIGWDDSHENAVEIAKI-VEDA----  150

Query  498  ILNIGPPGVAAVTLHGRSRQQRYTKMADWSYIAECAALIKRLNEKKDDVTDTVREPDERM  557
                   G  A+T+HGR+R Q Y   ADW  I +   + + ++                 
Sbjct  151  -------GAQALTVHGRTRAQNYEGTADWDAIKQ---VKQAVS-----------------  183

Query  558  LPNGGKVFFLGNGDCYSHYDYDDHINNAGVDAVMVGRGAIIKPWVFEEIQA  608
                  +  + NGD     D    +   G D VM+GRGA+  PW+F E   
Sbjct  184  ------IPVIANGDITDPEDAQRCLAYTGADGVMIGRGALGNPWLFAEQHT  228



Lambda      K        H        a         alpha
   0.315    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 919656064


Query= TCONS_00007813

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus). Members...  147     1e-40


>CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus).  Members of this 
family catalyze the reduction of the 5,6-double bond of a 
uridine residue on tRNA. Dihydrouridine modification of tRNA 
is widely observed in prokaryotes and eukaryotes, and also 
in some archae. Most dihydrouridines are found in the D loop 
of t-RNAs. The role of dihydrouridine in tRNA is currently 
unknown, but may increase conformational flexibility of the 
tRNA. It is likely that different family members have different 
substrate specificities, which may overlap. Dus 1 from 
Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts 
on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single 
subunit, requiring NADPH or NADH, and is stimulated by 
the presence of FAD. Some family members may be targeted to 
the mitochondria and even have a role in mitochondria.
Length=309

 Score = 147 bits (372),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 65/291 (22%)

Query  127  TLAPLTTQGNLPFRRLCIDYGCQF-TYSEMAMGMSLIQGQKSEWALMKAHESEALPPTIS  185
             LAP+    +LPFRRL  +YG     Y+EM    + ++ +K     M +   E  P  + 
Sbjct  1    LLAPMAGVTDLPFRRLVREYGAGDLVYTEMVTAKAQLRPEKVRI-RMLSELEEPTPLAV-  58

Query  186  STADVVQGYDNSKDFKFGAQIAGNKPWHAIKATELLSRLTPNLRVIDLNCGCPIDQVFRE  245
                               Q+ G+ P    +A +L+     +   ID+N GCP  +V R 
Sbjct  59   -------------------QLGGSDPALLAEAAKLVEDRGAD--GIDINMGCPSKKVTRG  97

Query  246  GAGSALLDHPSKLEKMLRGM-NAVSEMIPITVKIRTGTRDNSPNATKLIERLVLGGHESG  304
            G G+ALL +P  + ++++ +  AV   IP+TVKIR G  D+  NA ++ +  V       
Sbjct  98   GGGAALLRNPDLVAQIVKAVVKAVG--IPVTVKIRIGWDDSHENAVEIAKI-VEDA----  150

Query  305  ILNIGPPGVAAVTLHGRSRQQRYTKMADWSYIAECAALIKRLNEKKDDVTDTVREPDERM  364
                   G  A+T+HGR+R Q Y   ADW  I +   + + ++                 
Sbjct  151  -------GAQALTVHGRTRAQNYEGTADWDAIKQ---VKQAVS-----------------  183

Query  365  LPNGGKVFFLGNGDCYSHYDYDDHINNAGVDAVMVGRGAIIKPWVFEEIQA  415
                  +  + NGD     D    +   G D VM+GRGA+  PW+F E   
Sbjct  184  ------IPVIANGDITDPEDAQRCLAYTGADGVMIGRGALGNPWLFAEQHT  228



Lambda      K        H        a         alpha
   0.317    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00007814

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus). Members...  147     1e-40


>CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus).  Members of this 
family catalyze the reduction of the 5,6-double bond of a 
uridine residue on tRNA. Dihydrouridine modification of tRNA 
is widely observed in prokaryotes and eukaryotes, and also 
in some archae. Most dihydrouridines are found in the D loop 
of t-RNAs. The role of dihydrouridine in tRNA is currently 
unknown, but may increase conformational flexibility of the 
tRNA. It is likely that different family members have different 
substrate specificities, which may overlap. Dus 1 from 
Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts 
on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single 
subunit, requiring NADPH or NADH, and is stimulated by 
the presence of FAD. Some family members may be targeted to 
the mitochondria and even have a role in mitochondria.
Length=309

 Score = 147 bits (372),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 65/291 (22%)

Query  127  TLAPLTTQGNLPFRRLCIDYGCQF-TYSEMAMGMSLIQGQKSEWALMKAHESEALPPTIS  185
             LAP+    +LPFRRL  +YG     Y+EM    + ++ +K     M +   E  P  + 
Sbjct  1    LLAPMAGVTDLPFRRLVREYGAGDLVYTEMVTAKAQLRPEKVRI-RMLSELEEPTPLAV-  58

Query  186  STADVVQGYDNSKDFKFGAQIAGNKPWHAIKATELLSRLTPNLRVIDLNCGCPIDQVFRE  245
                               Q+ G+ P    +A +L+     +   ID+N GCP  +V R 
Sbjct  59   -------------------QLGGSDPALLAEAAKLVEDRGAD--GIDINMGCPSKKVTRG  97

Query  246  GAGSALLDHPSKLEKMLRGM-NAVSEMIPITVKIRTGTRDNSPNATKLIERLVLGGHESG  304
            G G+ALL +P  + ++++ +  AV   IP+TVKIR G  D+  NA ++ +  V       
Sbjct  98   GGGAALLRNPDLVAQIVKAVVKAVG--IPVTVKIRIGWDDSHENAVEIAKI-VEDA----  150

Query  305  ILNIGPPGVAAVTLHGRSRQQRYTKMADWSYIAECAALIKRLNEKKDDVTDTVREPDERM  364
                   G  A+T+HGR+R Q Y   ADW  I +   + + ++                 
Sbjct  151  -------GAQALTVHGRTRAQNYEGTADWDAIKQ---VKQAVS-----------------  183

Query  365  LPNGGKVFFLGNGDCYSHYDYDDHINNAGVDAVMVGRGAIIKPWVFEEIQA  415
                  +  + NGD     D    +   G D VM+GRGA+  PW+F E   
Sbjct  184  ------IPVIANGDITDPEDAQRCLAYTGADGVMIGRGALGNPWLFAEQHT  228



Lambda      K        H        a         alpha
   0.317    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00002544

Length=726
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus). Members...  147     8e-40


>CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus).  Members of this 
family catalyze the reduction of the 5,6-double bond of a 
uridine residue on tRNA. Dihydrouridine modification of tRNA 
is widely observed in prokaryotes and eukaryotes, and also 
in some archae. Most dihydrouridines are found in the D loop 
of t-RNAs. The role of dihydrouridine in tRNA is currently 
unknown, but may increase conformational flexibility of the 
tRNA. It is likely that different family members have different 
substrate specificities, which may overlap. Dus 1 from 
Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts 
on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single 
subunit, requiring NADPH or NADH, and is stimulated by 
the presence of FAD. Some family members may be targeted to 
the mitochondria and even have a role in mitochondria.
Length=309

 Score = 147 bits (372),  Expect = 8e-40, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 65/291 (22%)

Query  320  TLAPLTTQGNLPFRRLCIDYGCQF-TYSEMAMGMSLIQGQKSEWALMKAHESEALPPTIS  378
             LAP+    +LPFRRL  +YG     Y+EM    + ++ +K     M +   E  P  + 
Sbjct  1    LLAPMAGVTDLPFRRLVREYGAGDLVYTEMVTAKAQLRPEKVRI-RMLSELEEPTPLAV-  58

Query  379  STADVVQGYDNSKDFKFGAQIAGNKPWHAIKATELLSRLTPNLRVIDLNCGCPIDQVFRE  438
                               Q+ G+ P    +A +L+     +   ID+N GCP  +V R 
Sbjct  59   -------------------QLGGSDPALLAEAAKLVEDRGAD--GIDINMGCPSKKVTRG  97

Query  439  GAGSALLDHPSKLEKMLRGM-NAVSEMIPITVKIRTGTRDNSPNATKLIERLVLGGHESG  497
            G G+ALL +P  + ++++ +  AV   IP+TVKIR G  D+  NA ++ +  V       
Sbjct  98   GGGAALLRNPDLVAQIVKAVVKAVG--IPVTVKIRIGWDDSHENAVEIAKI-VEDA----  150

Query  498  ILNIGPPGVAAVTLHGRSRQQRYTKMADWSYIAECAALIKRLNEKKDDVTDTVREPDERM  557
                   G  A+T+HGR+R Q Y   ADW  I +   + + ++                 
Sbjct  151  -------GAQALTVHGRTRAQNYEGTADWDAIKQ---VKQAVS-----------------  183

Query  558  LPNGGKVFFLGNGDCYSHYDYDDHINNAGVDAVMVGRGAIIKPWVFEEIQA  608
                  +  + NGD     D    +   G D VM+GRGA+  PW+F E   
Sbjct  184  ------IPVIANGDITDPEDAQRCLAYTGADGVMIGRGALGNPWLFAEQHT  228



Lambda      K        H        a         alpha
   0.315    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 919656064


Query= TCONS_00002545

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus). Members...  147     1e-40


>CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus).  Members of this 
family catalyze the reduction of the 5,6-double bond of a 
uridine residue on tRNA. Dihydrouridine modification of tRNA 
is widely observed in prokaryotes and eukaryotes, and also 
in some archae. Most dihydrouridines are found in the D loop 
of t-RNAs. The role of dihydrouridine in tRNA is currently 
unknown, but may increase conformational flexibility of the 
tRNA. It is likely that different family members have different 
substrate specificities, which may overlap. Dus 1 from 
Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts 
on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single 
subunit, requiring NADPH or NADH, and is stimulated by 
the presence of FAD. Some family members may be targeted to 
the mitochondria and even have a role in mitochondria.
Length=309

 Score = 147 bits (372),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 65/291 (22%)

Query  127  TLAPLTTQGNLPFRRLCIDYGCQF-TYSEMAMGMSLIQGQKSEWALMKAHESEALPPTIS  185
             LAP+    +LPFRRL  +YG     Y+EM    + ++ +K     M +   E  P  + 
Sbjct  1    LLAPMAGVTDLPFRRLVREYGAGDLVYTEMVTAKAQLRPEKVRI-RMLSELEEPTPLAV-  58

Query  186  STADVVQGYDNSKDFKFGAQIAGNKPWHAIKATELLSRLTPNLRVIDLNCGCPIDQVFRE  245
                               Q+ G+ P    +A +L+     +   ID+N GCP  +V R 
Sbjct  59   -------------------QLGGSDPALLAEAAKLVEDRGAD--GIDINMGCPSKKVTRG  97

Query  246  GAGSALLDHPSKLEKMLRGM-NAVSEMIPITVKIRTGTRDNSPNATKLIERLVLGGHESG  304
            G G+ALL +P  + ++++ +  AV   IP+TVKIR G  D+  NA ++ +  V       
Sbjct  98   GGGAALLRNPDLVAQIVKAVVKAVG--IPVTVKIRIGWDDSHENAVEIAKI-VEDA----  150

Query  305  ILNIGPPGVAAVTLHGRSRQQRYTKMADWSYIAECAALIKRLNEKKDDVTDTVREPDERM  364
                   G  A+T+HGR+R Q Y   ADW  I +   + + ++                 
Sbjct  151  -------GAQALTVHGRTRAQNYEGTADWDAIKQ---VKQAVS-----------------  183

Query  365  LPNGGKVFFLGNGDCYSHYDYDDHINNAGVDAVMVGRGAIIKPWVFEEIQA  415
                  +  + NGD     D    +   G D VM+GRGA+  PW+F E   
Sbjct  184  ------IPVIANGDITDPEDAQRCLAYTGADGVMIGRGALGNPWLFAEQHT  228



Lambda      K        H        a         alpha
   0.317    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00002547

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus). Members...  147     1e-40


>CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus).  Members of this 
family catalyze the reduction of the 5,6-double bond of a 
uridine residue on tRNA. Dihydrouridine modification of tRNA 
is widely observed in prokaryotes and eukaryotes, and also 
in some archae. Most dihydrouridines are found in the D loop 
of t-RNAs. The role of dihydrouridine in tRNA is currently 
unknown, but may increase conformational flexibility of the 
tRNA. It is likely that different family members have different 
substrate specificities, which may overlap. Dus 1 from 
Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts 
on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single 
subunit, requiring NADPH or NADH, and is stimulated by 
the presence of FAD. Some family members may be targeted to 
the mitochondria and even have a role in mitochondria.
Length=309

 Score = 147 bits (372),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 65/291 (22%)

Query  127  TLAPLTTQGNLPFRRLCIDYGCQF-TYSEMAMGMSLIQGQKSEWALMKAHESEALPPTIS  185
             LAP+    +LPFRRL  +YG     Y+EM    + ++ +K     M +   E  P  + 
Sbjct  1    LLAPMAGVTDLPFRRLVREYGAGDLVYTEMVTAKAQLRPEKVRI-RMLSELEEPTPLAV-  58

Query  186  STADVVQGYDNSKDFKFGAQIAGNKPWHAIKATELLSRLTPNLRVIDLNCGCPIDQVFRE  245
                               Q+ G+ P    +A +L+     +   ID+N GCP  +V R 
Sbjct  59   -------------------QLGGSDPALLAEAAKLVEDRGAD--GIDINMGCPSKKVTRG  97

Query  246  GAGSALLDHPSKLEKMLRGM-NAVSEMIPITVKIRTGTRDNSPNATKLIERLVLGGHESG  304
            G G+ALL +P  + ++++ +  AV   IP+TVKIR G  D+  NA ++ +  V       
Sbjct  98   GGGAALLRNPDLVAQIVKAVVKAVG--IPVTVKIRIGWDDSHENAVEIAKI-VEDA----  150

Query  305  ILNIGPPGVAAVTLHGRSRQQRYTKMADWSYIAECAALIKRLNEKKDDVTDTVREPDERM  364
                   G  A+T+HGR+R Q Y   ADW  I +   + + ++                 
Sbjct  151  -------GAQALTVHGRTRAQNYEGTADWDAIKQ---VKQAVS-----------------  183

Query  365  LPNGGKVFFLGNGDCYSHYDYDDHINNAGVDAVMVGRGAIIKPWVFEEIQA  415
                  +  + NGD     D    +   G D VM+GRGA+  PW+F E   
Sbjct  184  ------IPVIANGDITDPEDAQRCLAYTGADGVMIGRGALGNPWLFAEQHT  228



Lambda      K        H        a         alpha
   0.317    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00002549

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461673 pfam05529, Bap31, B-cell receptor-associated protein 3...  208     6e-70
CDD:465623 pfam18035, Bap31_Bap29_C, Bap31/Bap29 cytoplasmic coil...  67.7    4e-16


>CDD:461673 pfam05529, Bap31, B-cell receptor-associated protein 31-like. 
 Bap31 is a polytopic integral protein of the endoplasmic reticulum 
membrane and a substrate of caspase-8. Bap31 is cleaved 
within its cytosolic domain, generating pro-apoptotic p20 
Bap31.
Length=137

 Score = 208 bits (531),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 76/142 (54%), Positives = 99/142 (70%), Gaps = 5/142 (4%)

Query  1    MTLYYSLVFCLLVFEMAVFMGLIIPLPFTVKRKLFTFISESPLVAKLQYGMKITFIFILI  60
            MTL ++LVF  L  EMAVF+ L++PLP  V++K+F   SESPL AK Q G KIT IF+LI
Sbjct  1    MTLQWTLVFGFLYAEMAVFLLLVLPLPSPVRQKIFKSRSESPLSAKFQIGFKITIIFLLI  60

Query  61   LFIDSVNRVYRVQLELASFTKEGNSMGAAALGTDRMEVQARKFYSQRNMYLCGFTLFLSL  120
            LF+D+V RV +   EL S     +        + RMEVQARKFY+QRN+Y+CGFTLFLSL
Sbjct  61   LFLDAVRRVRKYSAELESAKANAHQH-----PSARMEVQARKFYAQRNLYICGFTLFLSL  115

Query  121  ILNRTYTMILEVLRLEDRVKHL  142
            +L RT T+I E+  LE +++ L
Sbjct  116  VLRRTVTLISELATLEAKLEAL  137


>CDD:465623 pfam18035, Bap31_Bap29_C, Bap31/Bap29 cytoplasmic coiled-coil 
domain.  Bap31 is a polytopic integral protein of the endoplasmic 
reticulum membrane and a substrate of caspase-8. Bap31 
is cleaved within its cytosolic domain, generating pro-apoptotic 
p20 Bap31. This entry represents the cytoplasmic domain 
which forms a heterodimeric coiled-coil with Bap29. This 
Bap29 and Bap31 are homologous to each other and this entry 
includes both proteins.
Length=52

 Score = 67.7 bits (166),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 29/52 (56%), Gaps = 2/52 (4%)

Query  163  GEIARLRKEIEAKDLDIETLKKQCEGLTREYHSLGDRVTGTTNDGS--KKDL  212
             EI +L+KE++ K  DIE LKKQ EGL REY  L D       D    KKD 
Sbjct  1    KEIEKLKKELKKKKSDIEALKKQAEGLQREYDRLSDEHAKLQLDEGEDKKDD  52



Lambda      K        H        a         alpha
   0.325    0.141    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00002550

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461673 pfam05529, Bap31, B-cell receptor-associated protein 3...  101     3e-29
CDD:465623 pfam18035, Bap31_Bap29_C, Bap31/Bap29 cytoplasmic coil...  59.2    9e-14


>CDD:461673 pfam05529, Bap31, B-cell receptor-associated protein 31-like. 
 Bap31 is a polytopic integral protein of the endoplasmic reticulum 
membrane and a substrate of caspase-8. Bap31 is cleaved 
within its cytosolic domain, generating pro-apoptotic p20 
Bap31.
Length=137

 Score = 101 bits (254),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 32/51 (63%), Positives = 42/51 (82%), Gaps = 0/51 (0%)

Query  7    GTDRMEVQARKFYSQRNMYLCGFTLFLSLILNRTYTMILEVLRLEDRVKHL  57
             + RMEVQARKFY+QRN+Y+CGFTLFLSL+L RT T+I E+  LE +++ L
Sbjct  87   PSARMEVQARKFYAQRNLYICGFTLFLSLVLRRTVTLISELATLEAKLEAL  137


>CDD:465623 pfam18035, Bap31_Bap29_C, Bap31/Bap29 cytoplasmic coiled-coil 
domain.  Bap31 is a polytopic integral protein of the endoplasmic 
reticulum membrane and a substrate of caspase-8. Bap31 
is cleaved within its cytosolic domain, generating pro-apoptotic 
p20 Bap31. This entry represents the cytoplasmic domain 
which forms a heterodimeric coiled-coil with Bap29. This 
Bap29 and Bap31 are homologous to each other and this entry 
includes both proteins.
Length=52

 Score = 59.2 bits (144),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 29/52 (56%), Gaps = 2/52 (4%)

Query  78   GEIARLRKEIEAKDLDIETLKKQCEGLTREYHSLGDRVTGTTNDGS--KKDL  127
             EI +L+KE++ K  DIE LKKQ EGL REY  L D       D    KKD 
Sbjct  1    KEIEKLKKELKKKKSDIEALKKQAEGLQREYDRLSDEHAKLQLDEGEDKKDD  52



Lambda      K        H        a         alpha
   0.318    0.136    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00002551

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461673 pfam05529, Bap31, B-cell receptor-associated protein 3...  208     6e-70
CDD:465623 pfam18035, Bap31_Bap29_C, Bap31/Bap29 cytoplasmic coil...  67.7    4e-16


>CDD:461673 pfam05529, Bap31, B-cell receptor-associated protein 31-like. 
 Bap31 is a polytopic integral protein of the endoplasmic reticulum 
membrane and a substrate of caspase-8. Bap31 is cleaved 
within its cytosolic domain, generating pro-apoptotic p20 
Bap31.
Length=137

 Score = 208 bits (531),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 76/142 (54%), Positives = 99/142 (70%), Gaps = 5/142 (4%)

Query  1    MTLYYSLVFCLLVFEMAVFMGLIIPLPFTVKRKLFTFISESPLVAKLQYGMKITFIFILI  60
            MTL ++LVF  L  EMAVF+ L++PLP  V++K+F   SESPL AK Q G KIT IF+LI
Sbjct  1    MTLQWTLVFGFLYAEMAVFLLLVLPLPSPVRQKIFKSRSESPLSAKFQIGFKITIIFLLI  60

Query  61   LFIDSVNRVYRVQLELASFTKEGNSMGAAALGTDRMEVQARKFYSQRNMYLCGFTLFLSL  120
            LF+D+V RV +   EL S     +        + RMEVQARKFY+QRN+Y+CGFTLFLSL
Sbjct  61   LFLDAVRRVRKYSAELESAKANAHQH-----PSARMEVQARKFYAQRNLYICGFTLFLSL  115

Query  121  ILNRTYTMILEVLRLEDRVKHL  142
            +L RT T+I E+  LE +++ L
Sbjct  116  VLRRTVTLISELATLEAKLEAL  137


>CDD:465623 pfam18035, Bap31_Bap29_C, Bap31/Bap29 cytoplasmic coiled-coil 
domain.  Bap31 is a polytopic integral protein of the endoplasmic 
reticulum membrane and a substrate of caspase-8. Bap31 
is cleaved within its cytosolic domain, generating pro-apoptotic 
p20 Bap31. This entry represents the cytoplasmic domain 
which forms a heterodimeric coiled-coil with Bap29. This 
Bap29 and Bap31 are homologous to each other and this entry 
includes both proteins.
Length=52

 Score = 67.7 bits (166),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 29/52 (56%), Gaps = 2/52 (4%)

Query  163  GEIARLRKEIEAKDLDIETLKKQCEGLTREYHSLGDRVTGTTNDGS--KKDL  212
             EI +L+KE++ K  DIE LKKQ EGL REY  L D       D    KKD 
Sbjct  1    KEIEKLKKELKKKKSDIEALKKQAEGLQREYDRLSDEHAKLQLDEGEDKKDD  52



Lambda      K        H        a         alpha
   0.325    0.141    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00002552

Length=439


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00007815

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461673 pfam05529, Bap31, B-cell receptor-associated protein 3...  208     6e-70
CDD:465623 pfam18035, Bap31_Bap29_C, Bap31/Bap29 cytoplasmic coil...  67.7    4e-16


>CDD:461673 pfam05529, Bap31, B-cell receptor-associated protein 31-like. 
 Bap31 is a polytopic integral protein of the endoplasmic reticulum 
membrane and a substrate of caspase-8. Bap31 is cleaved 
within its cytosolic domain, generating pro-apoptotic p20 
Bap31.
Length=137

 Score = 208 bits (531),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 76/142 (54%), Positives = 99/142 (70%), Gaps = 5/142 (4%)

Query  1    MTLYYSLVFCLLVFEMAVFMGLIIPLPFTVKRKLFTFISESPLVAKLQYGMKITFIFILI  60
            MTL ++LVF  L  EMAVF+ L++PLP  V++K+F   SESPL AK Q G KIT IF+LI
Sbjct  1    MTLQWTLVFGFLYAEMAVFLLLVLPLPSPVRQKIFKSRSESPLSAKFQIGFKITIIFLLI  60

Query  61   LFIDSVNRVYRVQLELASFTKEGNSMGAAALGTDRMEVQARKFYSQRNMYLCGFTLFLSL  120
            LF+D+V RV +   EL S     +        + RMEVQARKFY+QRN+Y+CGFTLFLSL
Sbjct  61   LFLDAVRRVRKYSAELESAKANAHQH-----PSARMEVQARKFYAQRNLYICGFTLFLSL  115

Query  121  ILNRTYTMILEVLRLEDRVKHL  142
            +L RT T+I E+  LE +++ L
Sbjct  116  VLRRTVTLISELATLEAKLEAL  137


>CDD:465623 pfam18035, Bap31_Bap29_C, Bap31/Bap29 cytoplasmic coiled-coil 
domain.  Bap31 is a polytopic integral protein of the endoplasmic 
reticulum membrane and a substrate of caspase-8. Bap31 
is cleaved within its cytosolic domain, generating pro-apoptotic 
p20 Bap31. This entry represents the cytoplasmic domain 
which forms a heterodimeric coiled-coil with Bap29. This 
Bap29 and Bap31 are homologous to each other and this entry 
includes both proteins.
Length=52

 Score = 67.7 bits (166),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 29/52 (56%), Gaps = 2/52 (4%)

Query  163  GEIARLRKEIEAKDLDIETLKKQCEGLTREYHSLGDRVTGTTNDGS--KKDL  212
             EI +L+KE++ K  DIE LKKQ EGL REY  L D       D    KKD 
Sbjct  1    KEIEKLKKELKKKKSDIEALKKQAEGLQREYDRLSDEHAKLQLDEGEDKKDD  52



Lambda      K        H        a         alpha
   0.325    0.141    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00002553

Length=439


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0758    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00002548

Length=279


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00002554

Length=439


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00002555

Length=439


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00007816

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461673 pfam05529, Bap31, B-cell receptor-associated protein 3...  208     5e-70
CDD:465623 pfam18035, Bap31_Bap29_C, Bap31/Bap29 cytoplasmic coil...  67.7    4e-16


>CDD:461673 pfam05529, Bap31, B-cell receptor-associated protein 31-like. 
 Bap31 is a polytopic integral protein of the endoplasmic reticulum 
membrane and a substrate of caspase-8. Bap31 is cleaved 
within its cytosolic domain, generating pro-apoptotic p20 
Bap31.
Length=137

 Score = 208 bits (531),  Expect = 5e-70, Method: Composition-based stats.
 Identities = 77/143 (54%), Positives = 99/143 (69%), Gaps = 6/143 (4%)

Query  1    MTLYYSLVFCLLVFEMAVFMGLIIPLPFTVKRKLFTFISESPLVAKLQYGMKITFIFILI  60
            MTL ++LVF  L  EMAVF+ L++PLP  V++K+F   SESPL AK Q G KIT IF+LI
Sbjct  1    MTLQWTLVFGFLYAEMAVFLLLVLPLPSPVRQKIFKSRSESPLSAKFQIGFKITIIFLLI  60

Query  61   LFIDSVNRVYRVQLELASFTKEGNSMGRAAALGTDRMEVQARKFYSQRNMYLCGFTLFLS  120
            LF+D+V RV +   EL S     +    A      RMEVQARKFY+QRN+Y+CGFTLFLS
Sbjct  61   LFLDAVRRVRKYSAELESAKANAHQHPSA------RMEVQARKFYAQRNLYICGFTLFLS  114

Query  121  LILNRTYTMILEVLRLEDRVKHL  143
            L+L RT T+I E+  LE +++ L
Sbjct  115  LVLRRTVTLISELATLEAKLEAL  137


>CDD:465623 pfam18035, Bap31_Bap29_C, Bap31/Bap29 cytoplasmic coiled-coil 
domain.  Bap31 is a polytopic integral protein of the endoplasmic 
reticulum membrane and a substrate of caspase-8. Bap31 
is cleaved within its cytosolic domain, generating pro-apoptotic 
p20 Bap31. This entry represents the cytoplasmic domain 
which forms a heterodimeric coiled-coil with Bap29. This 
Bap29 and Bap31 are homologous to each other and this entry 
includes both proteins.
Length=52

 Score = 67.7 bits (166),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 29/52 (56%), Gaps = 2/52 (4%)

Query  164  GEIARLRKEIEAKDLDIETLKKQCEGLTREYHSLGDRVTGTTNDGS--KKDL  213
             EI +L+KE++ K  DIE LKKQ EGL REY  L D       D    KKD 
Sbjct  1    KEIEKLKKELKKKKSDIEALKKQAEGLQREYDRLSDEHAKLQLDEGEDKKDD  52



Lambda      K        H        a         alpha
   0.325    0.141    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00007817

Length=439


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00002556

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  135     2e-37
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            131     2e-35


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 135 bits (343),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 86/225 (38%), Gaps = 74/225 (33%)

Query  309  YILGQTLGEGEFGKVKLGWKKDGSVQVAIKLIRRESLGSNPNRLPKIYREISILRDLHHP  368
            Y + + LG G FG V     +D    VAIK I++E +    ++   I REI IL+ L+HP
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDK--NILREIKILKKLNHP  58

Query  369  NIVRLHEMVETDRHIGIIMEYASGGELFDHILNNRYLKDNSARRLFAQLVSGVGYLHKKG  428
            NIVRL++  E   ++ +++EY  GG LFD +       +  A+ +  Q++          
Sbjct  59   NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQIL----------  108

Query  429  IVHRDLKLENLLLDRNRNIIITDFGFANTFDPSDELGEEIEYNLTNKEFVKRMRLDKPNA  488
                                                                        
Sbjct       ------------------------------------------------------------  

Query  489  KGMRRGDLMQTSCGSPCYAAPELVVSDSLYTGRKVDVWSCGVILV  533
            +G+  G  + T  G+P Y APE++       G KVDVWS G IL 
Sbjct  109  EGLESGSSLTTFVGTPWYMAPEVL--GGNPYGPKVDVWSLGCILY  151


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 131 bits (332),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 68/235 (29%), Positives = 103/235 (44%), Gaps = 54/235 (23%)

Query  310  ILGQTLGEGEFGKVKLG-WKKDGS---VQVAIKLIRRESLGSNPNRLPKIYREISILRDL  365
             LG+ LGEG FG+V  G  K +G    ++VA+K ++    G++         E SI++ L
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKE---GADEEEREDFLEEASIMKKL  58

Query  366  HHPNIVRLHEMVETDRHIGIIMEYASGGELFDHILNNRYLKDNSARRLFAQLVS------  419
             HPNIV+L  +      + I+ EY  GG+L D      +L+ +  +     L+S      
Sbjct  59   DHPNIVKLLGVCTQGEPLYIVTEYMPGGDLLD------FLRKHKRKLTLKDLLSMALQIA  112

Query  420  -GVGYLHKKGIVHRDLKLENLLLDRNRNIIITDFGFANTFDPSDELGEEIEYNLTNKEFV  478
             G+ YL  K  VHRDL   N L+  N  + I+DFG       S ++ ++  Y        
Sbjct  113  KGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGL------SRDIYDDDYY--------  158

Query  479  KRMRLDKPNAKGMRRGDLMQTSCGSP-CYAAPELVVSDSLYTGRKVDVWSCGVIL  532
                               +     P  + APE  + D  +T  K DVWS GV+L
Sbjct  159  -----------------RKRGGGKLPIKWMAPE-SLKDGKFT-SKSDVWSFGVLL  194



Lambda      K        H        a         alpha
   0.312    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684357832


Query= TCONS_00002557

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00002559

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00002560

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-te...  152     3e-45
CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-te...  131     1e-37
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  103     1e-27
CDD:429790 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-te...  58.5    4e-11


>CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal 
domain.  C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, 
four helical up-and-down bundle.
Length=149

 Score = 152 bits (386),  Expect = 3e-45, Method: Composition-based stats.
 Identities = 64/148 (43%), Positives = 93/148 (63%), Gaps = 1/148 (1%)

Query  282  GQGYKYAIGLLNEGRIGIAAQMTGLALGAWENAASYVWNDRRQFGQLIGTFQGMQHQLAQ  341
            G+G++ A+  LN  R+ IAA   GLA  A + A +Y    R+ FG+ +  FQ ++H+LA+
Sbjct  1    GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYA-RRRKAFGRPLIDFQLVRHKLAE  59

Query  342  AYVEIAAARALVYNAARKKEAGQDFVQDAAMAKLYASQVAGRVASSAVEWMGGMGFVREG  401
               EI AAR LVY AA   +AG     +A+MAKLYAS+ A  VA  A++  GG G++RE 
Sbjct  60   MAAEIEAARLLVYRAAEALDAGGPDGAEASMAKLYASEAAVEVADLAMQLHGGYGYLREY  119

Query  402  IAEKMFRDSKIGAIYEGTSNIQLQTIAK  429
              E+++RD+++  I EGTS IQ   IA+
Sbjct  120  PVERLYRDARVLRIGEGTSEIQRNIIAR  147


>CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal 
domain.  The N-terminal domain of Acyl-CoA dehydrogenase is 
an all-alpha domain.
Length=113

 Score = 131 bits (332),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 44/111 (40%), Positives = 69/111 (62%), Gaps = 0/111 (0%)

Query  60   SETESLMAETVSKFAQEQIGPKVREMDESEVMDPTLVEQLFEQGLMGIEIPEEYGGAGMN  119
            +E +  + +TV +FA+E+I P   E DE       L ++L E GL+GI IPEEYGGAG++
Sbjct  1    TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITIPEEYGGAGLD  60

Query  120  FTSAIVAIEELARVDPSVSVLVDVHNTLVNTAFNKWADAALKKTWLPKLAT  170
            + +  +  EELAR D SV++ + VH++L      ++     K+ +LPKLA+
Sbjct  61   YLAYALVAEELARADASVALALSVHSSLGAPPILRFGTEEQKERYLPKLAS  111


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 103 bits (259),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 1/95 (1%)

Query  175  SFCLSEPASGSDAFALQTKAEKTADG-YKLNGSKMWITNSMEAGVFIVFANLDPSKGYKG  233
            +F L+EP +GSD  +L+T A     G + LNG+K WITN+  A +F+V A       + G
Sbjct  1    AFALTEPGAGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGG  60

Query  234  ITAFVVEKDTPGFSIAKKEKKLGIRASSTCVLNFD  268
            I+ F+V KD PG S+ + E KLG+R   T  L FD
Sbjct  61   ISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95


>CDD:429790 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal 
domain.  
Length=133

 Score = 58.5 bits (142),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 50/132 (38%), Gaps = 9/132 (7%)

Query  298  GIAAQMTGLALGAWENAASYVWND-RRQFGQLIGTFQGMQHQLAQAYVEIAAARALVYNA  356
            GIAA   G A  A            R  FG  +      Q  LA+A   I AAR L+  A
Sbjct  1    GIAAAALGAARAALAEFTERARGRVRAYFGVPLAEDPATQLALAEAAARIDAARLLLERA  60

Query  357  ARKKEAGQD--------FVQDAAMAKLYASQVAGRVASSAVEWMGGMGFVREGIAEKMFR  408
            A + EA              +A  A  +A+++A     +     GG    ++   ++++R
Sbjct  61   AARIEAAAAAGKPVTPALRAEARRAAAFATELAVAAVDALFRAAGGSALFQDSPLQRIWR  120

Query  409  DSKIGAIYEGTS  420
            D    A +   +
Sbjct  121  DIHAAAQHAAVN  132



Lambda      K        H        a         alpha
   0.316    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00002561

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-te...  152     3e-45
CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-te...  131     1e-37
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  103     1e-27
CDD:429790 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-te...  58.5    4e-11


>CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal 
domain.  C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, 
four helical up-and-down bundle.
Length=149

 Score = 152 bits (386),  Expect = 3e-45, Method: Composition-based stats.
 Identities = 64/148 (43%), Positives = 93/148 (63%), Gaps = 1/148 (1%)

Query  282  GQGYKYAIGLLNEGRIGIAAQMTGLALGAWENAASYVWNDRRQFGQLIGTFQGMQHQLAQ  341
            G+G++ A+  LN  R+ IAA   GLA  A + A +Y    R+ FG+ +  FQ ++H+LA+
Sbjct  1    GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYA-RRRKAFGRPLIDFQLVRHKLAE  59

Query  342  AYVEIAAARALVYNAARKKEAGQDFVQDAAMAKLYASQVAGRVASSAVEWMGGMGFVREG  401
               EI AAR LVY AA   +AG     +A+MAKLYAS+ A  VA  A++  GG G++RE 
Sbjct  60   MAAEIEAARLLVYRAAEALDAGGPDGAEASMAKLYASEAAVEVADLAMQLHGGYGYLREY  119

Query  402  IAEKMFRDSKIGAIYEGTSNIQLQTIAK  429
              E+++RD+++  I EGTS IQ   IA+
Sbjct  120  PVERLYRDARVLRIGEGTSEIQRNIIAR  147


>CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal 
domain.  The N-terminal domain of Acyl-CoA dehydrogenase is 
an all-alpha domain.
Length=113

 Score = 131 bits (332),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 44/111 (40%), Positives = 69/111 (62%), Gaps = 0/111 (0%)

Query  60   SETESLMAETVSKFAQEQIGPKVREMDESEVMDPTLVEQLFEQGLMGIEIPEEYGGAGMN  119
            +E +  + +TV +FA+E+I P   E DE       L ++L E GL+GI IPEEYGGAG++
Sbjct  1    TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITIPEEYGGAGLD  60

Query  120  FTSAIVAIEELARVDPSVSVLVDVHNTLVNTAFNKWADAALKKTWLPKLAT  170
            + +  +  EELAR D SV++ + VH++L      ++     K+ +LPKLA+
Sbjct  61   YLAYALVAEELARADASVALALSVHSSLGAPPILRFGTEEQKERYLPKLAS  111


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 103 bits (259),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 1/95 (1%)

Query  175  SFCLSEPASGSDAFALQTKAEKTADG-YKLNGSKMWITNSMEAGVFIVFANLDPSKGYKG  233
            +F L+EP +GSD  +L+T A     G + LNG+K WITN+  A +F+V A       + G
Sbjct  1    AFALTEPGAGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGG  60

Query  234  ITAFVVEKDTPGFSIAKKEKKLGIRASSTCVLNFD  268
            I+ F+V KD PG S+ + E KLG+R   T  L FD
Sbjct  61   ISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95


>CDD:429790 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal 
domain.  
Length=133

 Score = 58.5 bits (142),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 50/132 (38%), Gaps = 9/132 (7%)

Query  298  GIAAQMTGLALGAWENAASYVWND-RRQFGQLIGTFQGMQHQLAQAYVEIAAARALVYNA  356
            GIAA   G A  A            R  FG  +      Q  LA+A   I AAR L+  A
Sbjct  1    GIAAAALGAARAALAEFTERARGRVRAYFGVPLAEDPATQLALAEAAARIDAARLLLERA  60

Query  357  ARKKEAGQD--------FVQDAAMAKLYASQVAGRVASSAVEWMGGMGFVREGIAEKMFR  408
            A + EA              +A  A  +A+++A     +     GG    ++   ++++R
Sbjct  61   AARIEAAAAAGKPVTPALRAEARRAAAFATELAVAAVDALFRAAGGSALFQDSPLQRIWR  120

Query  409  DSKIGAIYEGTS  420
            D    A +   +
Sbjct  121  DIHAAAQHAAVN  132



Lambda      K        H        a         alpha
   0.316    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00007818

Length=272


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00002562

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-te...  152     3e-45
CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-te...  131     1e-37
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  103     1e-27
CDD:429790 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-te...  58.5    4e-11


>CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal 
domain.  C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, 
four helical up-and-down bundle.
Length=149

 Score = 152 bits (386),  Expect = 3e-45, Method: Composition-based stats.
 Identities = 64/148 (43%), Positives = 93/148 (63%), Gaps = 1/148 (1%)

Query  282  GQGYKYAIGLLNEGRIGIAAQMTGLALGAWENAASYVWNDRRQFGQLIGTFQGMQHQLAQ  341
            G+G++ A+  LN  R+ IAA   GLA  A + A +Y    R+ FG+ +  FQ ++H+LA+
Sbjct  1    GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYA-RRRKAFGRPLIDFQLVRHKLAE  59

Query  342  AYVEIAAARALVYNAARKKEAGQDFVQDAAMAKLYASQVAGRVASSAVEWMGGMGFVREG  401
               EI AAR LVY AA   +AG     +A+MAKLYAS+ A  VA  A++  GG G++RE 
Sbjct  60   MAAEIEAARLLVYRAAEALDAGGPDGAEASMAKLYASEAAVEVADLAMQLHGGYGYLREY  119

Query  402  IAEKMFRDSKIGAIYEGTSNIQLQTIAK  429
              E+++RD+++  I EGTS IQ   IA+
Sbjct  120  PVERLYRDARVLRIGEGTSEIQRNIIAR  147


>CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal 
domain.  The N-terminal domain of Acyl-CoA dehydrogenase is 
an all-alpha domain.
Length=113

 Score = 131 bits (332),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 44/111 (40%), Positives = 69/111 (62%), Gaps = 0/111 (0%)

Query  60   SETESLMAETVSKFAQEQIGPKVREMDESEVMDPTLVEQLFEQGLMGIEIPEEYGGAGMN  119
            +E +  + +TV +FA+E+I P   E DE       L ++L E GL+GI IPEEYGGAG++
Sbjct  1    TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITIPEEYGGAGLD  60

Query  120  FTSAIVAIEELARVDPSVSVLVDVHNTLVNTAFNKWADAALKKTWLPKLAT  170
            + +  +  EELAR D SV++ + VH++L      ++     K+ +LPKLA+
Sbjct  61   YLAYALVAEELARADASVALALSVHSSLGAPPILRFGTEEQKERYLPKLAS  111


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 103 bits (259),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 1/95 (1%)

Query  175  SFCLSEPASGSDAFALQTKAEKTADG-YKLNGSKMWITNSMEAGVFIVFANLDPSKGYKG  233
            +F L+EP +GSD  +L+T A     G + LNG+K WITN+  A +F+V A       + G
Sbjct  1    AFALTEPGAGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGG  60

Query  234  ITAFVVEKDTPGFSIAKKEKKLGIRASSTCVLNFD  268
            I+ F+V KD PG S+ + E KLG+R   T  L FD
Sbjct  61   ISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95


>CDD:429790 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal 
domain.  
Length=133

 Score = 58.5 bits (142),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 50/132 (38%), Gaps = 9/132 (7%)

Query  298  GIAAQMTGLALGAWENAASYVWND-RRQFGQLIGTFQGMQHQLAQAYVEIAAARALVYNA  356
            GIAA   G A  A            R  FG  +      Q  LA+A   I AAR L+  A
Sbjct  1    GIAAAALGAARAALAEFTERARGRVRAYFGVPLAEDPATQLALAEAAARIDAARLLLERA  60

Query  357  ARKKEAGQD--------FVQDAAMAKLYASQVAGRVASSAVEWMGGMGFVREGIAEKMFR  408
            A + EA              +A  A  +A+++A     +     GG    ++   ++++R
Sbjct  61   AARIEAAAAAGKPVTPALRAEARRAAAFATELAVAAVDALFRAAGGSALFQDSPLQRIWR  120

Query  409  DSKIGAIYEGTS  420
            D    A +   +
Sbjct  121  DIHAAAQHAAVN  132



Lambda      K        H        a         alpha
   0.316    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00007819

Length=316
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-te...  132     3e-39
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  102     6e-28


>CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal 
domain.  The N-terminal domain of Acyl-CoA dehydrogenase is 
an all-alpha domain.
Length=113

 Score = 132 bits (335),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 44/111 (40%), Positives = 69/111 (62%), Gaps = 0/111 (0%)

Query  60   SETESLMAETVSKFAQEQIGPKVREMDESEVMDPTLVEQLFEQGLMGIEIPEEYGGAGMN  119
            +E +  + +TV +FA+E+I P   E DE       L ++L E GL+GI IPEEYGGAG++
Sbjct  1    TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITIPEEYGGAGLD  60

Query  120  FTSAIVAIEELARVDPSVSVLVDVHNTLVNTAFNKWADAALKKTWLPKLAT  170
            + +  +  EELAR D SV++ + VH++L      ++     K+ +LPKLA+
Sbjct  61   YLAYALVAEELARADASVALALSVHSSLGAPPILRFGTEEQKERYLPKLAS  111


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 102 bits (256),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 1/95 (1%)

Query  175  SFCLSEPASGSDAFALQTKAEKTADG-YKLNGSKMWITNSMEAGVFIVFANLDPSKGYKG  233
            +F L+EP +GSD  +L+T A     G + LNG+K WITN+  A +F+V A       + G
Sbjct  1    AFALTEPGAGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGG  60

Query  234  ITAFVVEKDTPGFSIAKKEKKLGIRASSTCVLNFD  268
            I+ F+V KD PG S+ + E KLG+R   T  L FD
Sbjct  61   ISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00002563

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-te...  152     3e-45
CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-te...  131     1e-37
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  103     1e-27
CDD:429790 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-te...  58.5    4e-11


>CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal 
domain.  C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, 
four helical up-and-down bundle.
Length=149

 Score = 152 bits (386),  Expect = 3e-45, Method: Composition-based stats.
 Identities = 64/148 (43%), Positives = 93/148 (63%), Gaps = 1/148 (1%)

Query  282  GQGYKYAIGLLNEGRIGIAAQMTGLALGAWENAASYVWNDRRQFGQLIGTFQGMQHQLAQ  341
            G+G++ A+  LN  R+ IAA   GLA  A + A +Y    R+ FG+ +  FQ ++H+LA+
Sbjct  1    GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYA-RRRKAFGRPLIDFQLVRHKLAE  59

Query  342  AYVEIAAARALVYNAARKKEAGQDFVQDAAMAKLYASQVAGRVASSAVEWMGGMGFVREG  401
               EI AAR LVY AA   +AG     +A+MAKLYAS+ A  VA  A++  GG G++RE 
Sbjct  60   MAAEIEAARLLVYRAAEALDAGGPDGAEASMAKLYASEAAVEVADLAMQLHGGYGYLREY  119

Query  402  IAEKMFRDSKIGAIYEGTSNIQLQTIAK  429
              E+++RD+++  I EGTS IQ   IA+
Sbjct  120  PVERLYRDARVLRIGEGTSEIQRNIIAR  147


>CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal 
domain.  The N-terminal domain of Acyl-CoA dehydrogenase is 
an all-alpha domain.
Length=113

 Score = 131 bits (332),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 44/111 (40%), Positives = 69/111 (62%), Gaps = 0/111 (0%)

Query  60   SETESLMAETVSKFAQEQIGPKVREMDESEVMDPTLVEQLFEQGLMGIEIPEEYGGAGMN  119
            +E +  + +TV +FA+E+I P   E DE       L ++L E GL+GI IPEEYGGAG++
Sbjct  1    TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITIPEEYGGAGLD  60

Query  120  FTSAIVAIEELARVDPSVSVLVDVHNTLVNTAFNKWADAALKKTWLPKLAT  170
            + +  +  EELAR D SV++ + VH++L      ++     K+ +LPKLA+
Sbjct  61   YLAYALVAEELARADASVALALSVHSSLGAPPILRFGTEEQKERYLPKLAS  111


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 103 bits (259),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 1/95 (1%)

Query  175  SFCLSEPASGSDAFALQTKAEKTADG-YKLNGSKMWITNSMEAGVFIVFANLDPSKGYKG  233
            +F L+EP +GSD  +L+T A     G + LNG+K WITN+  A +F+V A       + G
Sbjct  1    AFALTEPGAGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGG  60

Query  234  ITAFVVEKDTPGFSIAKKEKKLGIRASSTCVLNFD  268
            I+ F+V KD PG S+ + E KLG+R   T  L FD
Sbjct  61   ISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95


>CDD:429790 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal 
domain.  
Length=133

 Score = 58.5 bits (142),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 50/132 (38%), Gaps = 9/132 (7%)

Query  298  GIAAQMTGLALGAWENAASYVWND-RRQFGQLIGTFQGMQHQLAQAYVEIAAARALVYNA  356
            GIAA   G A  A            R  FG  +      Q  LA+A   I AAR L+  A
Sbjct  1    GIAAAALGAARAALAEFTERARGRVRAYFGVPLAEDPATQLALAEAAARIDAARLLLERA  60

Query  357  ARKKEAGQD--------FVQDAAMAKLYASQVAGRVASSAVEWMGGMGFVREGIAEKMFR  408
            A + EA              +A  A  +A+++A     +     GG    ++   ++++R
Sbjct  61   AARIEAAAAAGKPVTPALRAEARRAAAFATELAVAAVDALFRAAGGSALFQDSPLQRIWR  120

Query  409  DSKIGAIYEGTS  420
            D    A +   +
Sbjct  121  DIHAAAQHAAVN  132



Lambda      K        H        a         alpha
   0.316    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00007820

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-te...  152     3e-45
CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-te...  131     1e-37
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  103     1e-27
CDD:429790 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-te...  58.5    4e-11


>CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal 
domain.  C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, 
four helical up-and-down bundle.
Length=149

 Score = 152 bits (386),  Expect = 3e-45, Method: Composition-based stats.
 Identities = 64/148 (43%), Positives = 93/148 (63%), Gaps = 1/148 (1%)

Query  282  GQGYKYAIGLLNEGRIGIAAQMTGLALGAWENAASYVWNDRRQFGQLIGTFQGMQHQLAQ  341
            G+G++ A+  LN  R+ IAA   GLA  A + A +Y    R+ FG+ +  FQ ++H+LA+
Sbjct  1    GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYA-RRRKAFGRPLIDFQLVRHKLAE  59

Query  342  AYVEIAAARALVYNAARKKEAGQDFVQDAAMAKLYASQVAGRVASSAVEWMGGMGFVREG  401
               EI AAR LVY AA   +AG     +A+MAKLYAS+ A  VA  A++  GG G++RE 
Sbjct  60   MAAEIEAARLLVYRAAEALDAGGPDGAEASMAKLYASEAAVEVADLAMQLHGGYGYLREY  119

Query  402  IAEKMFRDSKIGAIYEGTSNIQLQTIAK  429
              E+++RD+++  I EGTS IQ   IA+
Sbjct  120  PVERLYRDARVLRIGEGTSEIQRNIIAR  147


>CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal 
domain.  The N-terminal domain of Acyl-CoA dehydrogenase is 
an all-alpha domain.
Length=113

 Score = 131 bits (332),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 44/111 (40%), Positives = 69/111 (62%), Gaps = 0/111 (0%)

Query  60   SETESLMAETVSKFAQEQIGPKVREMDESEVMDPTLVEQLFEQGLMGIEIPEEYGGAGMN  119
            +E +  + +TV +FA+E+I P   E DE       L ++L E GL+GI IPEEYGGAG++
Sbjct  1    TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITIPEEYGGAGLD  60

Query  120  FTSAIVAIEELARVDPSVSVLVDVHNTLVNTAFNKWADAALKKTWLPKLAT  170
            + +  +  EELAR D SV++ + VH++L      ++     K+ +LPKLA+
Sbjct  61   YLAYALVAEELARADASVALALSVHSSLGAPPILRFGTEEQKERYLPKLAS  111


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 103 bits (259),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 1/95 (1%)

Query  175  SFCLSEPASGSDAFALQTKAEKTADG-YKLNGSKMWITNSMEAGVFIVFANLDPSKGYKG  233
            +F L+EP +GSD  +L+T A     G + LNG+K WITN+  A +F+V A       + G
Sbjct  1    AFALTEPGAGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGG  60

Query  234  ITAFVVEKDTPGFSIAKKEKKLGIRASSTCVLNFD  268
            I+ F+V KD PG S+ + E KLG+R   T  L FD
Sbjct  61   ISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95


>CDD:429790 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal 
domain.  
Length=133

 Score = 58.5 bits (142),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 50/132 (38%), Gaps = 9/132 (7%)

Query  298  GIAAQMTGLALGAWENAASYVWND-RRQFGQLIGTFQGMQHQLAQAYVEIAAARALVYNA  356
            GIAA   G A  A            R  FG  +      Q  LA+A   I AAR L+  A
Sbjct  1    GIAAAALGAARAALAEFTERARGRVRAYFGVPLAEDPATQLALAEAAARIDAARLLLERA  60

Query  357  ARKKEAGQD--------FVQDAAMAKLYASQVAGRVASSAVEWMGGMGFVREGIAEKMFR  408
            A + EA              +A  A  +A+++A     +     GG    ++   ++++R
Sbjct  61   AARIEAAAAAGKPVTPALRAEARRAAAFATELAVAAVDALFRAAGGSALFQDSPLQRIWR  120

Query  409  DSKIGAIYEGTS  420
            D    A +   +
Sbjct  121  DIHAAAQHAAVN  132



Lambda      K        H        a         alpha
   0.316    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00002565

Length=316
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-te...  132     3e-39
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  102     6e-28


>CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal 
domain.  The N-terminal domain of Acyl-CoA dehydrogenase is 
an all-alpha domain.
Length=113

 Score = 132 bits (335),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 44/111 (40%), Positives = 69/111 (62%), Gaps = 0/111 (0%)

Query  60   SETESLMAETVSKFAQEQIGPKVREMDESEVMDPTLVEQLFEQGLMGIEIPEEYGGAGMN  119
            +E +  + +TV +FA+E+I P   E DE       L ++L E GL+GI IPEEYGGAG++
Sbjct  1    TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITIPEEYGGAGLD  60

Query  120  FTSAIVAIEELARVDPSVSVLVDVHNTLVNTAFNKWADAALKKTWLPKLAT  170
            + +  +  EELAR D SV++ + VH++L      ++     K+ +LPKLA+
Sbjct  61   YLAYALVAEELARADASVALALSVHSSLGAPPILRFGTEEQKERYLPKLAS  111


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 102 bits (256),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 1/95 (1%)

Query  175  SFCLSEPASGSDAFALQTKAEKTADG-YKLNGSKMWITNSMEAGVFIVFANLDPSKGYKG  233
            +F L+EP +GSD  +L+T A     G + LNG+K WITN+  A +F+V A       + G
Sbjct  1    AFALTEPGAGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGG  60

Query  234  ITAFVVEKDTPGFSIAKKEKKLGIRASSTCVLNFD  268
            I+ F+V KD PG S+ + E KLG+R   T  L FD
Sbjct  61   ISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00002564

Length=316
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-te...  132     3e-39
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  102     6e-28


>CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal 
domain.  The N-terminal domain of Acyl-CoA dehydrogenase is 
an all-alpha domain.
Length=113

 Score = 132 bits (335),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 44/111 (40%), Positives = 69/111 (62%), Gaps = 0/111 (0%)

Query  60   SETESLMAETVSKFAQEQIGPKVREMDESEVMDPTLVEQLFEQGLMGIEIPEEYGGAGMN  119
            +E +  + +TV +FA+E+I P   E DE       L ++L E GL+GI IPEEYGGAG++
Sbjct  1    TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITIPEEYGGAGLD  60

Query  120  FTSAIVAIEELARVDPSVSVLVDVHNTLVNTAFNKWADAALKKTWLPKLAT  170
            + +  +  EELAR D SV++ + VH++L      ++     K+ +LPKLA+
Sbjct  61   YLAYALVAEELARADASVALALSVHSSLGAPPILRFGTEEQKERYLPKLAS  111


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 102 bits (256),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 1/95 (1%)

Query  175  SFCLSEPASGSDAFALQTKAEKTADG-YKLNGSKMWITNSMEAGVFIVFANLDPSKGYKG  233
            +F L+EP +GSD  +L+T A     G + LNG+K WITN+  A +F+V A       + G
Sbjct  1    AFALTEPGAGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGG  60

Query  234  ITAFVVEKDTPGFSIAKKEKKLGIRASSTCVLNFD  268
            I+ F+V KD PG S+ + E KLG+R   T  L FD
Sbjct  61   ISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00007821

Length=316
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-te...  132     3e-39
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  102     6e-28


>CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal 
domain.  The N-terminal domain of Acyl-CoA dehydrogenase is 
an all-alpha domain.
Length=113

 Score = 132 bits (335),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 44/111 (40%), Positives = 69/111 (62%), Gaps = 0/111 (0%)

Query  60   SETESLMAETVSKFAQEQIGPKVREMDESEVMDPTLVEQLFEQGLMGIEIPEEYGGAGMN  119
            +E +  + +TV +FA+E+I P   E DE       L ++L E GL+GI IPEEYGGAG++
Sbjct  1    TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITIPEEYGGAGLD  60

Query  120  FTSAIVAIEELARVDPSVSVLVDVHNTLVNTAFNKWADAALKKTWLPKLAT  170
            + +  +  EELAR D SV++ + VH++L      ++     K+ +LPKLA+
Sbjct  61   YLAYALVAEELARADASVALALSVHSSLGAPPILRFGTEEQKERYLPKLAS  111


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 102 bits (256),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 1/95 (1%)

Query  175  SFCLSEPASGSDAFALQTKAEKTADG-YKLNGSKMWITNSMEAGVFIVFANLDPSKGYKG  233
            +F L+EP +GSD  +L+T A     G + LNG+K WITN+  A +F+V A       + G
Sbjct  1    AFALTEPGAGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGG  60

Query  234  ITAFVVEKDTPGFSIAKKEKKLGIRASSTCVLNFD  268
            I+ F+V KD PG S+ + E KLG+R   T  L FD
Sbjct  61   ISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00007822

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-te...  152     3e-45
CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-te...  131     1e-37
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  103     1e-27
CDD:429790 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-te...  58.5    4e-11


>CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal 
domain.  C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, 
four helical up-and-down bundle.
Length=149

 Score = 152 bits (386),  Expect = 3e-45, Method: Composition-based stats.
 Identities = 64/148 (43%), Positives = 93/148 (63%), Gaps = 1/148 (1%)

Query  282  GQGYKYAIGLLNEGRIGIAAQMTGLALGAWENAASYVWNDRRQFGQLIGTFQGMQHQLAQ  341
            G+G++ A+  LN  R+ IAA   GLA  A + A +Y    R+ FG+ +  FQ ++H+LA+
Sbjct  1    GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYA-RRRKAFGRPLIDFQLVRHKLAE  59

Query  342  AYVEIAAARALVYNAARKKEAGQDFVQDAAMAKLYASQVAGRVASSAVEWMGGMGFVREG  401
               EI AAR LVY AA   +AG     +A+MAKLYAS+ A  VA  A++  GG G++RE 
Sbjct  60   MAAEIEAARLLVYRAAEALDAGGPDGAEASMAKLYASEAAVEVADLAMQLHGGYGYLREY  119

Query  402  IAEKMFRDSKIGAIYEGTSNIQLQTIAK  429
              E+++RD+++  I EGTS IQ   IA+
Sbjct  120  PVERLYRDARVLRIGEGTSEIQRNIIAR  147


>CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal 
domain.  The N-terminal domain of Acyl-CoA dehydrogenase is 
an all-alpha domain.
Length=113

 Score = 131 bits (332),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 44/111 (40%), Positives = 69/111 (62%), Gaps = 0/111 (0%)

Query  60   SETESLMAETVSKFAQEQIGPKVREMDESEVMDPTLVEQLFEQGLMGIEIPEEYGGAGMN  119
            +E +  + +TV +FA+E+I P   E DE       L ++L E GL+GI IPEEYGGAG++
Sbjct  1    TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITIPEEYGGAGLD  60

Query  120  FTSAIVAIEELARVDPSVSVLVDVHNTLVNTAFNKWADAALKKTWLPKLAT  170
            + +  +  EELAR D SV++ + VH++L      ++     K+ +LPKLA+
Sbjct  61   YLAYALVAEELARADASVALALSVHSSLGAPPILRFGTEEQKERYLPKLAS  111


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 103 bits (259),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 1/95 (1%)

Query  175  SFCLSEPASGSDAFALQTKAEKTADG-YKLNGSKMWITNSMEAGVFIVFANLDPSKGYKG  233
            +F L+EP +GSD  +L+T A     G + LNG+K WITN+  A +F+V A       + G
Sbjct  1    AFALTEPGAGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGG  60

Query  234  ITAFVVEKDTPGFSIAKKEKKLGIRASSTCVLNFD  268
            I+ F+V KD PG S+ + E KLG+R   T  L FD
Sbjct  61   ISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95


>CDD:429790 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal 
domain.  
Length=133

 Score = 58.5 bits (142),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 50/132 (38%), Gaps = 9/132 (7%)

Query  298  GIAAQMTGLALGAWENAASYVWND-RRQFGQLIGTFQGMQHQLAQAYVEIAAARALVYNA  356
            GIAA   G A  A            R  FG  +      Q  LA+A   I AAR L+  A
Sbjct  1    GIAAAALGAARAALAEFTERARGRVRAYFGVPLAEDPATQLALAEAAARIDAARLLLERA  60

Query  357  ARKKEAGQD--------FVQDAAMAKLYASQVAGRVASSAVEWMGGMGFVREGIAEKMFR  408
            A + EA              +A  A  +A+++A     +     GG    ++   ++++R
Sbjct  61   AARIEAAAAAGKPVTPALRAEARRAAAFATELAVAAVDALFRAAGGSALFQDSPLQRIWR  120

Query  409  DSKIGAIYEGTS  420
            D    A +   +
Sbjct  121  DIHAAAQHAAVN  132



Lambda      K        H        a         alpha
   0.316    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00007823

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-te...  152     3e-45
CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-te...  131     1e-37
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  103     1e-27
CDD:429790 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-te...  58.5    4e-11


>CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal 
domain.  C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, 
four helical up-and-down bundle.
Length=149

 Score = 152 bits (386),  Expect = 3e-45, Method: Composition-based stats.
 Identities = 64/148 (43%), Positives = 93/148 (63%), Gaps = 1/148 (1%)

Query  282  GQGYKYAIGLLNEGRIGIAAQMTGLALGAWENAASYVWNDRRQFGQLIGTFQGMQHQLAQ  341
            G+G++ A+  LN  R+ IAA   GLA  A + A +Y    R+ FG+ +  FQ ++H+LA+
Sbjct  1    GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYA-RRRKAFGRPLIDFQLVRHKLAE  59

Query  342  AYVEIAAARALVYNAARKKEAGQDFVQDAAMAKLYASQVAGRVASSAVEWMGGMGFVREG  401
               EI AAR LVY AA   +AG     +A+MAKLYAS+ A  VA  A++  GG G++RE 
Sbjct  60   MAAEIEAARLLVYRAAEALDAGGPDGAEASMAKLYASEAAVEVADLAMQLHGGYGYLREY  119

Query  402  IAEKMFRDSKIGAIYEGTSNIQLQTIAK  429
              E+++RD+++  I EGTS IQ   IA+
Sbjct  120  PVERLYRDARVLRIGEGTSEIQRNIIAR  147


>CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal 
domain.  The N-terminal domain of Acyl-CoA dehydrogenase is 
an all-alpha domain.
Length=113

 Score = 131 bits (332),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 44/111 (40%), Positives = 69/111 (62%), Gaps = 0/111 (0%)

Query  60   SETESLMAETVSKFAQEQIGPKVREMDESEVMDPTLVEQLFEQGLMGIEIPEEYGGAGMN  119
            +E +  + +TV +FA+E+I P   E DE       L ++L E GL+GI IPEEYGGAG++
Sbjct  1    TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITIPEEYGGAGLD  60

Query  120  FTSAIVAIEELARVDPSVSVLVDVHNTLVNTAFNKWADAALKKTWLPKLAT  170
            + +  +  EELAR D SV++ + VH++L      ++     K+ +LPKLA+
Sbjct  61   YLAYALVAEELARADASVALALSVHSSLGAPPILRFGTEEQKERYLPKLAS  111


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 103 bits (259),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 1/95 (1%)

Query  175  SFCLSEPASGSDAFALQTKAEKTADG-YKLNGSKMWITNSMEAGVFIVFANLDPSKGYKG  233
            +F L+EP +GSD  +L+T A     G + LNG+K WITN+  A +F+V A       + G
Sbjct  1    AFALTEPGAGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGG  60

Query  234  ITAFVVEKDTPGFSIAKKEKKLGIRASSTCVLNFD  268
            I+ F+V KD PG S+ + E KLG+R   T  L FD
Sbjct  61   ISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95


>CDD:429790 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal 
domain.  
Length=133

 Score = 58.5 bits (142),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 50/132 (38%), Gaps = 9/132 (7%)

Query  298  GIAAQMTGLALGAWENAASYVWND-RRQFGQLIGTFQGMQHQLAQAYVEIAAARALVYNA  356
            GIAA   G A  A            R  FG  +      Q  LA+A   I AAR L+  A
Sbjct  1    GIAAAALGAARAALAEFTERARGRVRAYFGVPLAEDPATQLALAEAAARIDAARLLLERA  60

Query  357  ARKKEAGQD--------FVQDAAMAKLYASQVAGRVASSAVEWMGGMGFVREGIAEKMFR  408
            A + EA              +A  A  +A+++A     +     GG    ++   ++++R
Sbjct  61   AARIEAAAAAGKPVTPALRAEARRAAAFATELAVAAVDALFRAAGGSALFQDSPLQRIWR  120

Query  409  DSKIGAIYEGTS  420
            D    A +   +
Sbjct  121  DIHAAAQHAAVN  132



Lambda      K        H        a         alpha
   0.316    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00002566

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-te...  152     3e-45
CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-te...  131     1e-37
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  103     1e-27
CDD:429790 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-te...  58.5    4e-11


>CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal 
domain.  C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, 
four helical up-and-down bundle.
Length=149

 Score = 152 bits (386),  Expect = 3e-45, Method: Composition-based stats.
 Identities = 64/148 (43%), Positives = 93/148 (63%), Gaps = 1/148 (1%)

Query  282  GQGYKYAIGLLNEGRIGIAAQMTGLALGAWENAASYVWNDRRQFGQLIGTFQGMQHQLAQ  341
            G+G++ A+  LN  R+ IAA   GLA  A + A +Y    R+ FG+ +  FQ ++H+LA+
Sbjct  1    GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYA-RRRKAFGRPLIDFQLVRHKLAE  59

Query  342  AYVEIAAARALVYNAARKKEAGQDFVQDAAMAKLYASQVAGRVASSAVEWMGGMGFVREG  401
               EI AAR LVY AA   +AG     +A+MAKLYAS+ A  VA  A++  GG G++RE 
Sbjct  60   MAAEIEAARLLVYRAAEALDAGGPDGAEASMAKLYASEAAVEVADLAMQLHGGYGYLREY  119

Query  402  IAEKMFRDSKIGAIYEGTSNIQLQTIAK  429
              E+++RD+++  I EGTS IQ   IA+
Sbjct  120  PVERLYRDARVLRIGEGTSEIQRNIIAR  147


>CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal 
domain.  The N-terminal domain of Acyl-CoA dehydrogenase is 
an all-alpha domain.
Length=113

 Score = 131 bits (332),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 44/111 (40%), Positives = 69/111 (62%), Gaps = 0/111 (0%)

Query  60   SETESLMAETVSKFAQEQIGPKVREMDESEVMDPTLVEQLFEQGLMGIEIPEEYGGAGMN  119
            +E +  + +TV +FA+E+I P   E DE       L ++L E GL+GI IPEEYGGAG++
Sbjct  1    TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITIPEEYGGAGLD  60

Query  120  FTSAIVAIEELARVDPSVSVLVDVHNTLVNTAFNKWADAALKKTWLPKLAT  170
            + +  +  EELAR D SV++ + VH++L      ++     K+ +LPKLA+
Sbjct  61   YLAYALVAEELARADASVALALSVHSSLGAPPILRFGTEEQKERYLPKLAS  111


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 103 bits (259),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 1/95 (1%)

Query  175  SFCLSEPASGSDAFALQTKAEKTADG-YKLNGSKMWITNSMEAGVFIVFANLDPSKGYKG  233
            +F L+EP +GSD  +L+T A     G + LNG+K WITN+  A +F+V A       + G
Sbjct  1    AFALTEPGAGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGG  60

Query  234  ITAFVVEKDTPGFSIAKKEKKLGIRASSTCVLNFD  268
            I+ F+V KD PG S+ + E KLG+R   T  L FD
Sbjct  61   ISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95


>CDD:429790 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal 
domain.  
Length=133

 Score = 58.5 bits (142),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 50/132 (38%), Gaps = 9/132 (7%)

Query  298  GIAAQMTGLALGAWENAASYVWND-RRQFGQLIGTFQGMQHQLAQAYVEIAAARALVYNA  356
            GIAA   G A  A            R  FG  +      Q  LA+A   I AAR L+  A
Sbjct  1    GIAAAALGAARAALAEFTERARGRVRAYFGVPLAEDPATQLALAEAAARIDAARLLLERA  60

Query  357  ARKKEAGQD--------FVQDAAMAKLYASQVAGRVASSAVEWMGGMGFVREGIAEKMFR  408
            A + EA              +A  A  +A+++A     +     GG    ++   ++++R
Sbjct  61   AARIEAAAAAGKPVTPALRAEARRAAAFATELAVAAVDALFRAAGGSALFQDSPLQRIWR  120

Query  409  DSKIGAIYEGTS  420
            D    A +   +
Sbjct  121  DIHAAAQHAAVN  132



Lambda      K        H        a         alpha
   0.316    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00002567

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00002568

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00002571

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461907 pfam06423, GWT1, GWT1. Glycosylphosphatidylinositol (G...  162     8e-49


>CDD:461907 pfam06423, GWT1, GWT1.  Glycosylphosphatidylinositol (GPI) is 
a conserved post-translational modification to anchor cell 
surface proteins to plasma membrane in eukaryotes. GWT1 is involved 
in GPI anchor biosynthesis; it is required for inositol 
acylation in yeast.
Length=138

 Score = 162 bits (413),  Expect = 8e-49, Method: Composition-based stats.
 Identities = 62/153 (41%), Positives = 91/153 (59%), Gaps = 15/153 (10%)

Query  308  KNREGVFSFSGYLAIFLAGRAIGIRIIPRGTSFSRSPEQARRRVLISLGVQALVWTTLFV  367
             NREG+FS  GYLAI+LAG ++G  ++PR  +   +  +   ++LI L + ++++  L +
Sbjct  1    ANREGIFSLPGYLAIYLAGVSLGSYVLPRRPT---NRVKQWSKLLIKLLILSILFWLLLL  57

Query  368  LNSTYAMGYGANIPVSRRLANMPYVLWVSAFNTAQLFVFCLIETLCFPAVHRTTTQESES  427
            + + Y        PVSRRLAN+PYVLWV AFN   L ++ L++ + F           E 
Sbjct  58   VLAFYVE------PVSRRLANLPYVLWVVAFNLTFLLLYLLVDLVFF------ADSAKEK  105

Query  428  ERVDFATSRIMSAFNKNSLAIFLLANLLTGAVN  460
             R   AT  ++ A N+N LA+FLLANLLTG VN
Sbjct  106  ARPSTATPCLLEAINRNGLAVFLLANLLTGLVN  138



Lambda      K        H        a         alpha
   0.325    0.138    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 620767060


Query= TCONS_00007824

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461907 pfam06423, GWT1, GWT1. Glycosylphosphatidylinositol (G...  163     5e-49


>CDD:461907 pfam06423, GWT1, GWT1.  Glycosylphosphatidylinositol (GPI) is 
a conserved post-translational modification to anchor cell 
surface proteins to plasma membrane in eukaryotes. GWT1 is involved 
in GPI anchor biosynthesis; it is required for inositol 
acylation in yeast.
Length=138

 Score = 163 bits (414),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 62/153 (41%), Positives = 91/153 (59%), Gaps = 15/153 (10%)

Query  308  KNREGVFSFSGYLAIFLAGRAIGIRIIPRGTSFSRSPEQARRRVLISLGVQALVWTTLFV  367
             NREG+FS  GYLAI+LAG ++G  ++PR  +   +  +   ++LI L + ++++  L +
Sbjct  1    ANREGIFSLPGYLAIYLAGVSLGSYVLPRRPT---NRVKQWSKLLIKLLILSILFWLLLL  57

Query  368  LNSTYAMGYGANIPVSRRLANMPYVLWVSAFNTAQLFVFCLIETLCFPAVHRTTTQESES  427
            + + Y        PVSRRLAN+PYVLWV AFN   L ++ L++ + F           E 
Sbjct  58   VLAFYVE------PVSRRLANLPYVLWVVAFNLTFLLLYLLVDLVFF------ADSAKEK  105

Query  428  ERVDFATSRIMSAFNKNSLAIFLLANLLTGAVN  460
             R   AT  ++ A N+N LA+FLLANLLTG VN
Sbjct  106  ARPSTATPCLLEAINRNGLAVFLLANLLTGLVN  138



Lambda      K        H        a         alpha
   0.325    0.138    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00002569

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461907 pfam06423, GWT1, GWT1. Glycosylphosphatidylinositol (G...  162     8e-49


>CDD:461907 pfam06423, GWT1, GWT1.  Glycosylphosphatidylinositol (GPI) is 
a conserved post-translational modification to anchor cell 
surface proteins to plasma membrane in eukaryotes. GWT1 is involved 
in GPI anchor biosynthesis; it is required for inositol 
acylation in yeast.
Length=138

 Score = 162 bits (413),  Expect = 8e-49, Method: Composition-based stats.
 Identities = 62/153 (41%), Positives = 91/153 (59%), Gaps = 15/153 (10%)

Query  308  KNREGVFSFSGYLAIFLAGRAIGIRIIPRGTSFSRSPEQARRRVLISLGVQALVWTTLFV  367
             NREG+FS  GYLAI+LAG ++G  ++PR  +   +  +   ++LI L + ++++  L +
Sbjct  1    ANREGIFSLPGYLAIYLAGVSLGSYVLPRRPT---NRVKQWSKLLIKLLILSILFWLLLL  57

Query  368  LNSTYAMGYGANIPVSRRLANMPYVLWVSAFNTAQLFVFCLIETLCFPAVHRTTTQESES  427
            + + Y        PVSRRLAN+PYVLWV AFN   L ++ L++ + F           E 
Sbjct  58   VLAFYVE------PVSRRLANLPYVLWVVAFNLTFLLLYLLVDLVFF------ADSAKEK  105

Query  428  ERVDFATSRIMSAFNKNSLAIFLLANLLTGAVN  460
             R   AT  ++ A N+N LA+FLLANLLTG VN
Sbjct  106  ARPSTATPCLLEAINRNGLAVFLLANLLTGLVN  138



Lambda      K        H        a         alpha
   0.325    0.138    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 620767060


Query= TCONS_00007825

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461907 pfam06423, GWT1, GWT1. Glycosylphosphatidylinositol (G...  162     8e-49


>CDD:461907 pfam06423, GWT1, GWT1.  Glycosylphosphatidylinositol (GPI) is 
a conserved post-translational modification to anchor cell 
surface proteins to plasma membrane in eukaryotes. GWT1 is involved 
in GPI anchor biosynthesis; it is required for inositol 
acylation in yeast.
Length=138

 Score = 162 bits (413),  Expect = 8e-49, Method: Composition-based stats.
 Identities = 62/153 (41%), Positives = 91/153 (59%), Gaps = 15/153 (10%)

Query  308  KNREGVFSFSGYLAIFLAGRAIGIRIIPRGTSFSRSPEQARRRVLISLGVQALVWTTLFV  367
             NREG+FS  GYLAI+LAG ++G  ++PR  +   +  +   ++LI L + ++++  L +
Sbjct  1    ANREGIFSLPGYLAIYLAGVSLGSYVLPRRPT---NRVKQWSKLLIKLLILSILFWLLLL  57

Query  368  LNSTYAMGYGANIPVSRRLANMPYVLWVSAFNTAQLFVFCLIETLCFPAVHRTTTQESES  427
            + + Y        PVSRRLAN+PYVLWV AFN   L ++ L++ + F           E 
Sbjct  58   VLAFYVE------PVSRRLANLPYVLWVVAFNLTFLLLYLLVDLVFF------ADSAKEK  105

Query  428  ERVDFATSRIMSAFNKNSLAIFLLANLLTGAVN  460
             R   AT  ++ A N+N LA+FLLANLLTG VN
Sbjct  106  ARPSTATPCLLEAINRNGLAVFLLANLLTGLVN  138



Lambda      K        H        a         alpha
   0.325    0.138    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 620767060


Query= TCONS_00007826

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461907 pfam06423, GWT1, GWT1. Glycosylphosphatidylinositol (G...  162     8e-49


>CDD:461907 pfam06423, GWT1, GWT1.  Glycosylphosphatidylinositol (GPI) is 
a conserved post-translational modification to anchor cell 
surface proteins to plasma membrane in eukaryotes. GWT1 is involved 
in GPI anchor biosynthesis; it is required for inositol 
acylation in yeast.
Length=138

 Score = 162 bits (413),  Expect = 8e-49, Method: Composition-based stats.
 Identities = 62/153 (41%), Positives = 91/153 (59%), Gaps = 15/153 (10%)

Query  308  KNREGVFSFSGYLAIFLAGRAIGIRIIPRGTSFSRSPEQARRRVLISLGVQALVWTTLFV  367
             NREG+FS  GYLAI+LAG ++G  ++PR  +   +  +   ++LI L + ++++  L +
Sbjct  1    ANREGIFSLPGYLAIYLAGVSLGSYVLPRRPT---NRVKQWSKLLIKLLILSILFWLLLL  57

Query  368  LNSTYAMGYGANIPVSRRLANMPYVLWVSAFNTAQLFVFCLIETLCFPAVHRTTTQESES  427
            + + Y        PVSRRLAN+PYVLWV AFN   L ++ L++ + F           E 
Sbjct  58   VLAFYVE------PVSRRLANLPYVLWVVAFNLTFLLLYLLVDLVFF------ADSAKEK  105

Query  428  ERVDFATSRIMSAFNKNSLAIFLLANLLTGAVN  460
             R   AT  ++ A N+N LA+FLLANLLTG VN
Sbjct  106  ARPSTATPCLLEAINRNGLAVFLLANLLTGLVN  138



Lambda      K        H        a         alpha
   0.325    0.138    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0851    0.140     1.90     42.6     43.6 

Effective search space used: 620767060


Query= TCONS_00002570

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                245     3e-75


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 245 bits (627),  Expect = 3e-75, Method: Composition-based stats.
 Identities = 141/440 (32%), Positives = 207/440 (47%), Gaps = 44/440 (10%)

Query  150  AFVESQVERIRAAAEASTQRYKQGQPLGPLDGVPVAVKDEVHVEGYRRNLGS--NLDFKG  207
            AFV    +   A A A+ ++   G P GPL GVP+AVKD + V+G     GS    ++  
Sbjct  19   AFVTVFFDEALAQAAAADKQRAAGDPKGPLHGVPIAVKDNIDVKGVPTTAGSKALENYPA  78

Query  208  GFEGTSWCVQKWEEAGAIIIGKTTMHELGLDTTNNNPNYGTPRNPHNQDYYCGGSSGGSG  267
             ++ T   V++  +AGA+I+GKT M E  + ++  N  +G  RNP +     GGSSGGS 
Sbjct  79   PYDATV--VERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTRNPWDLSRTPGGSSGGSA  136

Query  268  YAVGAGLVPIALGADGGGSIRIPSSFCGIWGLKPTHNRVSGFPTASLAPTVGVYGPMAAS  327
             AV AGLVP+A+G D GGSIRIP+SFCG+ GLKPT+ RVS +     A ++   GP+A S
Sbjct  137  AAVAAGLVPLAIGTDTGGSIRIPASFCGLVGLKPTYGRVSRYGVVGYASSLDQVGPLARS  196

Query  328  IDDLALAYRLMAAPAPATEDPVSATFPDPMSSISSTAQRPRSKTIGIVPSWI-DRAEPPV  386
            ++D AL  R+++   P   D  S   P P        +  +   IG+         +P V
Sbjct  197  VEDAALLLRVISGYDPK--DSTSLPPPVP-DYAEPVKKSLKGLRIGVYREDGYFDLDPEV  253

Query  387  RAVFDAALDFYRKQGYTVVDIAIPYLPEGQRAHVLTIMSEISSGLT-------PAQIGAL  439
            R   + AL      G+ VV++  P L      + L   +E SS L             + 
Sbjct  254  RRAVEEALAQLEALGHEVVEVDPPSLDYALPLYYLIAPAEASSNLARYDGVPSGPDDLSE  313

Query  440  TAPNK--------VLVSMGMWQITAQD------LIAAQRLRNLLMSHLAYLFRQHPGLLI  485
              P          V   + +              + AQ++R L+    A LF +    ++
Sbjct  314  LYPRTRAEGLGDEVKRRIILGNYALSAGYYDKYYLKAQKVRRLIRREFAGLFEELD--VL  371

Query  486  LTPTSPIPGWRIESETDLARGVSDGKASVRNMEY---VWLANFSGCPAISCPAGYSGGDK  542
            L+PT+P P  R+    D               ++   V   N +G PAIS PAG++    
Sbjct  372  LSPTAPTPAPRLGEPDD------SPLVMYNLDDFTAGVVPVNLAGLPAISLPAGFT--AD  423

Query  543  GGRVPVGVMAMGEWGSEEDL  562
            G  +PVGV  +G+ G EE L
Sbjct  424  G--LPVGVQIIGKPGDEETL  441



Lambda      K        H        a         alpha
   0.317    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 783080272


Query= TCONS_00007827

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461907 pfam06423, GWT1, GWT1. Glycosylphosphatidylinositol (G...  159     5e-49


>CDD:461907 pfam06423, GWT1, GWT1.  Glycosylphosphatidylinositol (GPI) is 
a conserved post-translational modification to anchor cell 
surface proteins to plasma membrane in eukaryotes. GWT1 is involved 
in GPI anchor biosynthesis; it is required for inositol 
acylation in yeast.
Length=138

 Score = 159 bits (405),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 62/153 (41%), Positives = 91/153 (59%), Gaps = 15/153 (10%)

Query  167  KNREGVFSFSGYLAIFLAGRAIGIRIIPRGTSFSRSPEQARRRVLISLGVQALVWTTLFV  226
             NREG+FS  GYLAI+LAG ++G  ++PR  +   +  +   ++LI L + ++++  L +
Sbjct  1    ANREGIFSLPGYLAIYLAGVSLGSYVLPRRPT---NRVKQWSKLLIKLLILSILFWLLLL  57

Query  227  LNSTYAMGYGANIPVSRRLANMPYVLWVSAFNTAQLFVFCLIETLCFPAVHRTTTQESES  286
            + + Y        PVSRRLAN+PYVLWV AFN   L ++ L++ + F           E 
Sbjct  58   VLAFYVE------PVSRRLANLPYVLWVVAFNLTFLLLYLLVDLVFF------ADSAKEK  105

Query  287  ERVDFATSRIMSAFNKNSLAIFLLANLLTGAVN  319
             R   AT  ++ A N+N LA+FLLANLLTG VN
Sbjct  106  ARPSTATPCLLEAINRNGLAVFLLANLLTGLVN  138



Lambda      K        H        a         alpha
   0.326    0.139    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00002572

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                237     3e-72


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 237 bits (608),  Expect = 3e-72, Method: Composition-based stats.
 Identities = 141/449 (31%), Positives = 207/449 (46%), Gaps = 53/449 (12%)

Query  150  AFVESQVERIRAAAEASTQRYKQGQPLGPLDGVPVAVKDEVHVEGYRRNLGS--NLDFKG  207
            AFV    +   A A A+ ++   G P GPL GVP+AVKD + V+G     GS    ++  
Sbjct  19   AFVTVFFDEALAQAAAADKQRAAGDPKGPLHGVPIAVKDNIDVKGVPTTAGSKALENYPA  78

Query  208  GFEGTSWCVQKWEEAGAIIIGKTTMHELGLEISQAHPEADTTNNNPNYGTPRNPHNQDYY  267
             ++ T   V++  +AGA+I+GKT M E  +          ++  N  +G  RNP +    
Sbjct  79   PYDATV--VERLRKAGAVILGKTNMDEFAM---------GSSTENSVFGPTRNPWDLSRT  127

Query  268  CGGSSGGSGYAVGAGLVPIALGADGGGSIRIPSSFCGIWGLKPTHNRVSGFPTASLAPTV  327
             GGSSGGS  AV AGLVP+A+G D GGSIRIP+SFCG+ GLKPT+ RVS +     A ++
Sbjct  128  PGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPASFCGLVGLKPTYGRVSRYGVVGYASSL  187

Query  328  GVYGPMAASIDDLALAYRLMAAPAPATEDPVSATFPDPMSSISSTAQRPRSKTIGIVPSW  387
               GP+A S++D AL  R+++   P   D  S   P P        +  +   IG+    
Sbjct  188  DQVGPLARSVEDAALLLRVISGYDPK--DSTSLPPPVP-DYAEPVKKSLKGLRIGVYRED  244

Query  388  I-DRAEPPVRAVFDAALDFYRKQGYTVVDIAIPYLPEGQRAHVLTIMSEISSGLT-----  441
                 +P VR   + AL      G+ VV++  P L      + L   +E SS L      
Sbjct  245  GYFDLDPEVRRAVEEALAQLEALGHEVVEVDPPSLDYALPLYYLIAPAEASSNLARYDGV  304

Query  442  --PAQIGALTAPNK--------VLVSMGMWQITAQD------LIAAQRLRNLLMSHLAYL  485
                   +   P          V   + +              + AQ++R L+    A L
Sbjct  305  PSGPDDLSELYPRTRAEGLGDEVKRRIILGNYALSAGYYDKYYLKAQKVRRLIRREFAGL  364

Query  486  FRQHPGLLILTPTSPIPGWRIESETDLARGVSDGKASVRNMEY---VWLANFSGCPAISC  542
            F +    ++L+PT+P P  R+    D               ++   V   N +G PAIS 
Sbjct  365  FEELD--VLLSPTAPTPAPRLGEPDD------SPLVMYNLDDFTAGVVPVNLAGLPAISL  416

Query  543  PAGYSGGDKGGRVPVGVMAMGEWGSEEDL  571
            PAG++    G  +PVGV  +G+ G EE L
Sbjct  417  PAGFT--ADG--LPVGVQIIGKPGDEETL  441



Lambda      K        H        a         alpha
   0.316    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784588280


Query= TCONS_00007829

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF42...  65.3    1e-13


>CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF4246).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and fungi. Proteins 
in this family are typically between 392 and 644 amino acids 
in length.
Length=421

 Score = 65.3 bits (160),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 24/39 (62%), Positives = 28/39 (72%), Gaps = 0/39 (0%)

Query  79   EKPIDLQTTVRARGLQVIVKLADIKLTPETPRYIGTPWH  117
              P+DL+   R RGLQVIVKLA+I+LTPE P Y G  WH
Sbjct  248  PYPVDLREDFRDRGLQVIVKLANIELTPEKPEYPGGSWH  286



Lambda      K        H        a         alpha
   0.322    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00007831

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF42...  65.3    1e-13


>CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF4246).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and fungi. Proteins 
in this family are typically between 392 and 644 amino acids 
in length.
Length=421

 Score = 65.3 bits (160),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 24/39 (62%), Positives = 28/39 (72%), Gaps = 0/39 (0%)

Query  79   EKPIDLQTTVRARGLQVIVKLADIKLTPETPRYIGTPWH  117
              P+DL+   R RGLQVIVKLA+I+LTPE P Y G  WH
Sbjct  248  PYPVDLREDFRDRGLQVIVKLANIELTPEKPEYPGGSWH  286



Lambda      K        H        a         alpha
   0.322    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00007830

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF42...  65.3    1e-13


>CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF4246).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and fungi. Proteins 
in this family are typically between 392 and 644 amino acids 
in length.
Length=421

 Score = 65.3 bits (160),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 24/39 (62%), Positives = 28/39 (72%), Gaps = 0/39 (0%)

Query  79   EKPIDLQTTVRARGLQVIVKLADIKLTPETPRYIGTPWH  117
              P+DL+   R RGLQVIVKLA+I+LTPE P Y G  WH
Sbjct  248  PYPVDLREDFRDRGLQVIVKLANIELTPEKPEYPGGSWH  286



Lambda      K        H        a         alpha
   0.322    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00002573

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF42...  65.3    1e-13


>CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF4246).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and fungi. Proteins 
in this family are typically between 392 and 644 amino acids 
in length.
Length=421

 Score = 65.3 bits (160),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 24/39 (62%), Positives = 28/39 (72%), Gaps = 0/39 (0%)

Query  79   EKPIDLQTTVRARGLQVIVKLADIKLTPETPRYIGTPWH  117
              P+DL+   R RGLQVIVKLA+I+LTPE P Y G  WH
Sbjct  248  PYPVDLREDFRDRGLQVIVKLANIELTPEKPEYPGGSWH  286



Lambda      K        H        a         alpha
   0.322    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00002574

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF42...  65.3    1e-13


>CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF4246).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and fungi. Proteins 
in this family are typically between 392 and 644 amino acids 
in length.
Length=421

 Score = 65.3 bits (160),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 24/39 (62%), Positives = 28/39 (72%), Gaps = 0/39 (0%)

Query  79   EKPIDLQTTVRARGLQVIVKLADIKLTPETPRYIGTPWH  117
              P+DL+   R RGLQVIVKLA+I+LTPE P Y G  WH
Sbjct  248  PYPVDLREDFRDRGLQVIVKLANIELTPEKPEYPGGSWH  286



Lambda      K        H        a         alpha
   0.322    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00007832

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  179     2e-54
CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain....  112     2e-30


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 179 bits (457),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 88/276 (32%), Positives = 122/276 (44%), Gaps = 72/276 (26%)

Query  194  RMIREANRVSALAHRKVLENVLRMSTEAEIEGLFLDT-CISHGAKNQAYEIIAGSGENAA  252
             ++R+A R++A A    L  +    TE E+            GA+  A+  I  SG NAA
Sbjct  1    ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGGARGPAFPPIVASGPNAA  60

Query  253  VLHYVKNNEPLQGRQLVCLDAGAEWN-CYASDVTRTFPLAADWPTARARDIYQLVEEMQE  311
            + HY+ N+  L+   LV +D GAE++  Y SD+TRTF +    P+   R++Y+ V E QE
Sbjct  61   IPHYIPNDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVV--GKPSPEQRELYEAVLEAQE  118

Query  312  ECIKRIQKGVRFLDLQVLAHVIAIEGLMRLGILKGGSVEEIRESGASTVFFPHGLGHHVG  371
              I  ++ GV   D+       A E L   G+ +               +FPHGLGH +G
Sbjct  119  AAIAAVKPGVTGGDV----DAAAREVLEEAGLGE---------------YFPHGLGHGIG  159

Query  372  LEVHDVSAKRLTAVEGDKEYYSSILVPSMSHCPCTLSAPLLEEGMVVTVEPGIYFSRLAL  431
            LEVH+                     P +S         +LE GMV T+EPGIYF     
Sbjct  160  LEVHEG--------------------PYISRGGDD---RVLEPGMVFTIEPGIYF-----  191

Query  432  ANARKLAFAKYINFDEAEKYIP-IGGVRIEDDILVT  466
                                IP  GGVRIED +LVT
Sbjct  192  --------------------IPGWGGVRIEDTVLVT  207


>CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain.  This 
domain is structurally very similar to the creatinase N-terminal 
domain (pfam01321). However, little or no sequence similarity 
exists between the two families.
Length=121

 Score = 112 bits (284),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 41/121 (34%), Positives = 54/121 (45%), Gaps = 8/121 (7%)

Query  36   HARRVA---AKLGVSSGLIYLVGQPTINWGDSDQPRPFRQRRYFYYLSGVEEADCYLTY-  91
            +A R A   AKL   + +  L G P       D   PFRQ   FYYL+G  E D  L   
Sbjct  1    YAERRARLLAKLP-PNSVAILPGAPEKYRNG-DVFYPFRQDSDFYYLTGFNEPDAVLVLE  58

Query  92   --DIKNDLLTLYVPDFDLHRAIWMGPTLTVKEARERYDVDQVRYHASLKGDIQRWADNYN  149
              DI +   TL+VP  D    IW GP L  +EA+E + VD+V     L   + +     +
Sbjct  59   GGDIDSGKETLFVPPKDPEDEIWDGPRLGPEEAKELFGVDEVYPIDELDEVLPKLLKGRD  118

Query  150  K  150
             
Sbjct  119  T  119



Lambda      K        H        a         alpha
   0.320    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00002576

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00002577

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  179     2e-54
CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain....  112     2e-30


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 179 bits (457),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 88/276 (32%), Positives = 122/276 (44%), Gaps = 72/276 (26%)

Query  194  RMIREANRVSALAHRKVLENVLRMSTEAEIEGLFLDT-CISHGAKNQAYEIIAGSGENAA  252
             ++R+A R++A A    L  +    TE E+            GA+  A+  I  SG NAA
Sbjct  1    ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGGARGPAFPPIVASGPNAA  60

Query  253  VLHYVKNNEPLQGRQLVCLDAGAEWN-CYASDVTRTFPLAADWPTARARDIYQLVEEMQE  311
            + HY+ N+  L+   LV +D GAE++  Y SD+TRTF +    P+   R++Y+ V E QE
Sbjct  61   IPHYIPNDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVV--GKPSPEQRELYEAVLEAQE  118

Query  312  ECIKRIQKGVRFLDLQVLAHVIAIEGLMRLGILKGGSVEEIRESGASTVFFPHGLGHHVG  371
              I  ++ GV   D+       A E L   G+ +               +FPHGLGH +G
Sbjct  119  AAIAAVKPGVTGGDV----DAAAREVLEEAGLGE---------------YFPHGLGHGIG  159

Query  372  LEVHDVSAKRLTAVEGDKEYYSSILVPSMSHCPCTLSAPLLEEGMVVTVEPGIYFSRLAL  431
            LEVH+                     P +S         +LE GMV T+EPGIYF     
Sbjct  160  LEVHEG--------------------PYISRGGDD---RVLEPGMVFTIEPGIYF-----  191

Query  432  ANARKLAFAKYINFDEAEKYIP-IGGVRIEDDILVT  466
                                IP  GGVRIED +LVT
Sbjct  192  --------------------IPGWGGVRIEDTVLVT  207


>CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain.  This 
domain is structurally very similar to the creatinase N-terminal 
domain (pfam01321). However, little or no sequence similarity 
exists between the two families.
Length=121

 Score = 112 bits (284),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 41/121 (34%), Positives = 54/121 (45%), Gaps = 8/121 (7%)

Query  36   HARRVA---AKLGVSSGLIYLVGQPTINWGDSDQPRPFRQRRYFYYLSGVEEADCYLTY-  91
            +A R A   AKL   + +  L G P       D   PFRQ   FYYL+G  E D  L   
Sbjct  1    YAERRARLLAKLP-PNSVAILPGAPEKYRNG-DVFYPFRQDSDFYYLTGFNEPDAVLVLE  58

Query  92   --DIKNDLLTLYVPDFDLHRAIWMGPTLTVKEARERYDVDQVRYHASLKGDIQRWADNYN  149
              DI +   TL+VP  D    IW GP L  +EA+E + VD+V     L   + +     +
Sbjct  59   GGDIDSGKETLFVPPKDPEDEIWDGPRLGPEEAKELFGVDEVYPIDELDEVLPKLLKGRD  118

Query  150  K  150
             
Sbjct  119  T  119



Lambda      K        H        a         alpha
   0.320    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00002578

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  180     5e-55
CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain....  103     3e-27


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 180 bits (459),  Expect = 5e-55, Method: Composition-based stats.
 Identities = 88/276 (32%), Positives = 122/276 (44%), Gaps = 72/276 (26%)

Query  156  RMIREANRVSALAHRKVLENVLRMSTEAEIEGLFLDT-CISHGAKNQAYEIIAGSGENAA  214
             ++R+A R++A A    L  +    TE E+            GA+  A+  I  SG NAA
Sbjct  1    ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGGARGPAFPPIVASGPNAA  60

Query  215  VLHYVKNNEPLQGRQLVCLDAGAEWN-CYASDVTRTFPLAADWPTARARDIYQLVEEMQE  273
            + HY+ N+  L+   LV +D GAE++  Y SD+TRTF +    P+   R++Y+ V E QE
Sbjct  61   IPHYIPNDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVV--GKPSPEQRELYEAVLEAQE  118

Query  274  ECIKRIQKGVRFLDLQVLAHVIAIEGLMRLGILKGGSVEEIRESGASTVFFPHGLGHHVG  333
              I  ++ GV   D+       A E L   G+ +               +FPHGLGH +G
Sbjct  119  AAIAAVKPGVTGGDV----DAAAREVLEEAGLGE---------------YFPHGLGHGIG  159

Query  334  LEVHDVSAKRLTAVEGDKEYYSSILVPSMSHCPCTLSAPLLEEGMVVTVEPGIYFSRLAL  393
            LEVH+                     P +S         +LE GMV T+EPGIYF     
Sbjct  160  LEVHEG--------------------PYISRGGDD---RVLEPGMVFTIEPGIYF-----  191

Query  394  ANARKLAFAKYINFDEAEKYIP-IGGVRIEDDILVT  428
                                IP  GGVRIED +LVT
Sbjct  192  --------------------IPGWGGVRIEDTVLVT  207


>CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain.  This 
domain is structurally very similar to the creatinase N-terminal 
domain (pfam01321). However, little or no sequence similarity 
exists between the two families.
Length=121

 Score = 103 bits (259),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 32/89 (36%), Positives = 42/89 (47%), Gaps = 3/89 (3%)

Query  27   DQPRPFRQRRYFYYLSGVEEADCYLTY---DIKNDLLTLYVPDFDLHRAIWMGPTLTVKE  83
            D   PFRQ   FYYL+G  E D  L     DI +   TL+VP  D    IW GP L  +E
Sbjct  31   DVFYPFRQDSDFYYLTGFNEPDAVLVLEGGDIDSGKETLFVPPKDPEDEIWDGPRLGPEE  90

Query  84   ARERYDVDQVRYHASLKGDIQRWADNYNK  112
            A+E + VD+V     L   + +     + 
Sbjct  91   AKELFGVDEVYPIDELDEVLPKLLKGRDT  119



Lambda      K        H        a         alpha
   0.320    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 558268256


Query= TCONS_00007833

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  80.6    1e-19
CDD:460740 pfam02889, Sec63, Sec63 Brl domain. This domain (also ...  75.7    1e-15


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 80.6 bits (200),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 7/69 (10%)

Query  20  DPYEILGISRSADEKAISRHYKRLSLIYHPDKIRPDPSKNETIETLNERFVELTKAYKAL  79
           D YEILG+S  A ++ I + Y++L+L YHPDK   DP          E+F E+ +AY+ L
Sbjct  1   DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEA-------EEKFKEINEAYEVL  53

Query  80  TDEEVRNNY  88
           +D E R  Y
Sbjct  54  SDPEKRAIY  62


>CDD:460740 pfam02889, Sec63, Sec63 Brl domain.  This domain (also known 
as the Brl domain) is required for assembly of functional endoplasmic 
reticulum translocons.
Length=307

 Score = 75.7 bits (187),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 50/230 (22%), Positives = 90/230 (39%), Gaps = 25/230 (11%)

Query  163  KEDITDGGIINALSAGVEFKDMLKGPRAEAGLAKLEKKVLAEGSILVPETRKTLSQMDDS  222
            K + T   ++  LS+  EF+  +   R E      EKK L +   L+ +    +    + 
Sbjct  26   KPNTTLADLLRILSSASEFEQ-IP-VRQE------EKKELKK---LLEKVPIPVKGDIED  74

Query  223  TRRKALALLWAYLGRIDLEDATLNGEKYEAAPIALSLNEAFIAISLAFGNLHPILGSFRT  282
               K   LL AY+ R+ L    L  +       A  +  A   I L+ G L   L +   
Sbjct  75   PHAKVNILLQAYISRLKLPGFALVSDMNYILQNAGRILRALFEILLSKGWLSAALTALDL  134

Query  283  SQHLIQAVAPGSSPLLQLPYFNNQVVKAIEGADAKDHYTVQKFMSLPEDKRRSLTVGAGL  342
             + + Q +    SPL Q P    +++K +E    K   +V+  + L + +     +G  +
Sbjct  135  CKMIEQRMWDSDSPLRQFPGIPPELIKKLE---KKGVESVRDILELDDAEE----LGELI  187

Query  343  LSEKQYSTAVSVAKQLPVLEVSRAFFKVMGEKVITPSSL-VQLVVKARFI  391
             + K          + P +E+     +V   + IT S L V++ +   F 
Sbjct  188  RNPKMGKDIAQFVNRFPKIEIE---AEV---QPITRSVLRVEVTITPDFP  231



Lambda      K        H        a         alpha
   0.317    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00002580

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  179     2e-54
CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain....  109     3e-29


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 179 bits (457),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 88/276 (32%), Positives = 122/276 (44%), Gaps = 72/276 (26%)

Query  189  RMIREANRVSALAHRKVLENVLRMSTEAEIEGLFLDT-CISHGAKNQAYEIIAGSGENAA  247
             ++R+A R++A A    L  +    TE E+            GA+  A+  I  SG NAA
Sbjct  1    ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGGARGPAFPPIVASGPNAA  60

Query  248  VLHYVKNNEPLQGRQLVCLDAGAEWN-CYASDVTRTFPLAADWPTARARDIYQLVEEMQE  306
            + HY+ N+  L+   LV +D GAE++  Y SD+TRTF +    P+   R++Y+ V E QE
Sbjct  61   IPHYIPNDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVV--GKPSPEQRELYEAVLEAQE  118

Query  307  ECIKRIQKGVRFLDLQVLAHVIAIEGLMRLGILKGGSVEEIRESGASTVFFPHGLGHHVG  366
              I  ++ GV   D+       A E L   G+ +               +FPHGLGH +G
Sbjct  119  AAIAAVKPGVTGGDV----DAAAREVLEEAGLGE---------------YFPHGLGHGIG  159

Query  367  LEVHDVSAKRLTAVEGDKEYYSSILVPSMSHCPCTLSAPLLEEGMVVTVEPGIYFSRLAL  426
            LEVH+                     P +S         +LE GMV T+EPGIYF     
Sbjct  160  LEVHEG--------------------PYISRGGDD---RVLEPGMVFTIEPGIYF-----  191

Query  427  ANARKLAFAKYINFDEAEKYIP-IGGVRIEDDILVT  461
                                IP  GGVRIED +LVT
Sbjct  192  --------------------IPGWGGVRIEDTVLVT  207


>CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain.  This 
domain is structurally very similar to the creatinase N-terminal 
domain (pfam01321). However, little or no sequence similarity 
exists between the two families.
Length=121

 Score = 109 bits (275),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 51/114 (45%), Gaps = 5/114 (4%)

Query  35   VAAKLGVSSGLIYLVGQPTINWGDSDQPRPFRQRRYFYYLSGVEEADCYLTY---DIKND  91
            + AKL   + +  L G P       D   PFRQ   FYYL+G  E D  L     DI + 
Sbjct  8    LLAKLP-PNSVAILPGAPEKYRNG-DVFYPFRQDSDFYYLTGFNEPDAVLVLEGGDIDSG  65

Query  92   LLTLYVPDFDLHRAIWMGPTLTVKEARERYDVDQVRYHASLKGDIQRWADNYNK  145
              TL+VP  D    IW GP L  +EA+E + VD+V     L   + +     + 
Sbjct  66   KETLFVPPKDPEDEIWDGPRLGPEEAKELFGVDEVYPIDELDEVLPKLLKGRDT  119



Lambda      K        H        a         alpha
   0.320    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00002579

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  179     2e-54
CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain....  112     2e-30


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 179 bits (457),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 88/276 (32%), Positives = 122/276 (44%), Gaps = 72/276 (26%)

Query  194  RMIREANRVSALAHRKVLENVLRMSTEAEIEGLFLDT-CISHGAKNQAYEIIAGSGENAA  252
             ++R+A R++A A    L  +    TE E+            GA+  A+  I  SG NAA
Sbjct  1    ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGGARGPAFPPIVASGPNAA  60

Query  253  VLHYVKNNEPLQGRQLVCLDAGAEWN-CYASDVTRTFPLAADWPTARARDIYQLVEEMQE  311
            + HY+ N+  L+   LV +D GAE++  Y SD+TRTF +    P+   R++Y+ V E QE
Sbjct  61   IPHYIPNDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVV--GKPSPEQRELYEAVLEAQE  118

Query  312  ECIKRIQKGVRFLDLQVLAHVIAIEGLMRLGILKGGSVEEIRESGASTVFFPHGLGHHVG  371
              I  ++ GV   D+       A E L   G+ +               +FPHGLGH +G
Sbjct  119  AAIAAVKPGVTGGDV----DAAAREVLEEAGLGE---------------YFPHGLGHGIG  159

Query  372  LEVHDVSAKRLTAVEGDKEYYSSILVPSMSHCPCTLSAPLLEEGMVVTVEPGIYFSRLAL  431
            LEVH+                     P +S         +LE GMV T+EPGIYF     
Sbjct  160  LEVHEG--------------------PYISRGGDD---RVLEPGMVFTIEPGIYF-----  191

Query  432  ANARKLAFAKYINFDEAEKYIP-IGGVRIEDDILVT  466
                                IP  GGVRIED +LVT
Sbjct  192  --------------------IPGWGGVRIEDTVLVT  207


>CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain.  This 
domain is structurally very similar to the creatinase N-terminal 
domain (pfam01321). However, little or no sequence similarity 
exists between the two families.
Length=121

 Score = 112 bits (284),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 41/121 (34%), Positives = 54/121 (45%), Gaps = 8/121 (7%)

Query  36   HARRVA---AKLGVSSGLIYLVGQPTINWGDSDQPRPFRQRRYFYYLSGVEEADCYLTY-  91
            +A R A   AKL   + +  L G P       D   PFRQ   FYYL+G  E D  L   
Sbjct  1    YAERRARLLAKLP-PNSVAILPGAPEKYRNG-DVFYPFRQDSDFYYLTGFNEPDAVLVLE  58

Query  92   --DIKNDLLTLYVPDFDLHRAIWMGPTLTVKEARERYDVDQVRYHASLKGDIQRWADNYN  149
              DI +   TL+VP  D    IW GP L  +EA+E + VD+V     L   + +     +
Sbjct  59   GGDIDSGKETLFVPPKDPEDEIWDGPRLGPEEAKELFGVDEVYPIDELDEVLPKLLKGRD  118

Query  150  K  150
             
Sbjct  119  T  119



Lambda      K        H        a         alpha
   0.320    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00002581

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  177     1e-54


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 177 bits (451),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 88/276 (32%), Positives = 122/276 (44%), Gaps = 72/276 (26%)

Query  82   RMIREANRVSALAHRKVLENVLRMSTEAEIEGLFLDT-CISHGAKNQAYEIIAGSGENAA  140
             ++R+A R++A A    L  +    TE E+            GA+  A+  I  SG NAA
Sbjct  1    ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGGARGPAFPPIVASGPNAA  60

Query  141  VLHYVKNNEPLQGRQLVCLDAGAEWN-CYASDVTRTFPLAADWPTARARDIYQLVEEMQE  199
            + HY+ N+  L+   LV +D GAE++  Y SD+TRTF +    P+   R++Y+ V E QE
Sbjct  61   IPHYIPNDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVV--GKPSPEQRELYEAVLEAQE  118

Query  200  ECIKRIQKGVRFLDLQVLAHVIAIEGLMRLGILKGGSVEEIRESGASTVFFPHGLGHHVG  259
              I  ++ GV   D+       A E L   G+ +               +FPHGLGH +G
Sbjct  119  AAIAAVKPGVTGGDV----DAAAREVLEEAGLGE---------------YFPHGLGHGIG  159

Query  260  LEVHDVSAKRLTAVEGDKEYYSSILVPSMSHCPCTLSAPLLEEGMVVTVEPGIYFSRLAL  319
            LEVH+                     P +S         +LE GMV T+EPGIYF     
Sbjct  160  LEVHEG--------------------PYISRGGDD---RVLEPGMVFTIEPGIYF-----  191

Query  320  ANARKLAFAKYINFDEAEKYIP-IGGVRIEDDILVT  354
                                IP  GGVRIED +LVT
Sbjct  192  --------------------IPGWGGVRIEDTVLVT  207



Lambda      K        H        a         alpha
   0.319    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00002583

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  179     2e-54
CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain....  102     5e-27


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 179 bits (456),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 88/276 (32%), Positives = 122/276 (44%), Gaps = 72/276 (26%)

Query  162  RMIREANRVSALAHRKVLENVLRMSTEAEIEGLFLDT-CISHGAKNQAYEIIAGSGENAA  220
             ++R+A R++A A    L  +    TE E+            GA+  A+  I  SG NAA
Sbjct  1    ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGGARGPAFPPIVASGPNAA  60

Query  221  VLHYVKNNEPLQGRQLVCLDAGAEWN-CYASDVTRTFPLAADWPTARARDIYQLVEEMQE  279
            + HY+ N+  L+   LV +D GAE++  Y SD+TRTF +    P+   R++Y+ V E QE
Sbjct  61   IPHYIPNDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVV--GKPSPEQRELYEAVLEAQE  118

Query  280  ECIKRIQKGVRFLDLQVLAHVIAIEGLMRLGILKGGSVEEIRESGASTVFFPHGLGHHVG  339
              I  ++ GV   D+       A E L   G+ +               +FPHGLGH +G
Sbjct  119  AAIAAVKPGVTGGDV----DAAAREVLEEAGLGE---------------YFPHGLGHGIG  159

Query  340  LEVHDVSAKRLTAVEGDKEYYSSILVPSMSHCPCTLSAPLLEEGMVVTVEPGIYFSRLAL  399
            LEVH+                     P +S         +LE GMV T+EPGIYF     
Sbjct  160  LEVHEG--------------------PYISRGGDD---RVLEPGMVFTIEPGIYF-----  191

Query  400  ANARKLAFAKYINFDEAEKYIP-IGGVRIEDDILVT  434
                                IP  GGVRIED +LVT
Sbjct  192  --------------------IPGWGGVRIEDTVLVT  207


>CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain.  This 
domain is structurally very similar to the creatinase N-terminal 
domain (pfam01321). However, little or no sequence similarity 
exists between the two families.
Length=121

 Score = 102 bits (258),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 32/89 (36%), Positives = 42/89 (47%), Gaps = 3/89 (3%)

Query  33   DQPRPFRQRRYFYYLSGVEEADCYLTY---DIKNDLLTLYVPDFDLHRAIWMGPTLTVKE  89
            D   PFRQ   FYYL+G  E D  L     DI +   TL+VP  D    IW GP L  +E
Sbjct  31   DVFYPFRQDSDFYYLTGFNEPDAVLVLEGGDIDSGKETLFVPPKDPEDEIWDGPRLGPEE  90

Query  90   ARERYDVDQVRYHASLKGDIQRWADNYNK  118
            A+E + VD+V     L   + +     + 
Sbjct  91   AKELFGVDEVYPIDELDEVLPKLLKGRDT  119



Lambda      K        H        a         alpha
   0.320    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00002582

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  179     2e-54
CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain....  112     2e-30


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 179 bits (457),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 88/276 (32%), Positives = 122/276 (44%), Gaps = 72/276 (26%)

Query  194  RMIREANRVSALAHRKVLENVLRMSTEAEIEGLFLDT-CISHGAKNQAYEIIAGSGENAA  252
             ++R+A R++A A    L  +    TE E+            GA+  A+  I  SG NAA
Sbjct  1    ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGGARGPAFPPIVASGPNAA  60

Query  253  VLHYVKNNEPLQGRQLVCLDAGAEWN-CYASDVTRTFPLAADWPTARARDIYQLVEEMQE  311
            + HY+ N+  L+   LV +D GAE++  Y SD+TRTF +    P+   R++Y+ V E QE
Sbjct  61   IPHYIPNDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVV--GKPSPEQRELYEAVLEAQE  118

Query  312  ECIKRIQKGVRFLDLQVLAHVIAIEGLMRLGILKGGSVEEIRESGASTVFFPHGLGHHVG  371
              I  ++ GV   D+       A E L   G+ +               +FPHGLGH +G
Sbjct  119  AAIAAVKPGVTGGDV----DAAAREVLEEAGLGE---------------YFPHGLGHGIG  159

Query  372  LEVHDVSAKRLTAVEGDKEYYSSILVPSMSHCPCTLSAPLLEEGMVVTVEPGIYFSRLAL  431
            LEVH+                     P +S         +LE GMV T+EPGIYF     
Sbjct  160  LEVHEG--------------------PYISRGGDD---RVLEPGMVFTIEPGIYF-----  191

Query  432  ANARKLAFAKYINFDEAEKYIP-IGGVRIEDDILVT  466
                                IP  GGVRIED +LVT
Sbjct  192  --------------------IPGWGGVRIEDTVLVT  207


>CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain.  This 
domain is structurally very similar to the creatinase N-terminal 
domain (pfam01321). However, little or no sequence similarity 
exists between the two families.
Length=121

 Score = 112 bits (284),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 41/121 (34%), Positives = 54/121 (45%), Gaps = 8/121 (7%)

Query  36   HARRVA---AKLGVSSGLIYLVGQPTINWGDSDQPRPFRQRRYFYYLSGVEEADCYLTY-  91
            +A R A   AKL   + +  L G P       D   PFRQ   FYYL+G  E D  L   
Sbjct  1    YAERRARLLAKLP-PNSVAILPGAPEKYRNG-DVFYPFRQDSDFYYLTGFNEPDAVLVLE  58

Query  92   --DIKNDLLTLYVPDFDLHRAIWMGPTLTVKEARERYDVDQVRYHASLKGDIQRWADNYN  149
              DI +   TL+VP  D    IW GP L  +EA+E + VD+V     L   + +     +
Sbjct  59   GGDIDSGKETLFVPPKDPEDEIWDGPRLGPEEAKELFGVDEVYPIDELDEVLPKLLKGRD  118

Query  150  K  150
             
Sbjct  119  T  119



Lambda      K        H        a         alpha
   0.320    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00007835

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  179     2e-54
CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain....  112     2e-30


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 179 bits (457),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 88/276 (32%), Positives = 122/276 (44%), Gaps = 72/276 (26%)

Query  194  RMIREANRVSALAHRKVLENVLRMSTEAEIEGLFLDT-CISHGAKNQAYEIIAGSGENAA  252
             ++R+A R++A A    L  +    TE E+            GA+  A+  I  SG NAA
Sbjct  1    ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGGARGPAFPPIVASGPNAA  60

Query  253  VLHYVKNNEPLQGRQLVCLDAGAEWN-CYASDVTRTFPLAADWPTARARDIYQLVEEMQE  311
            + HY+ N+  L+   LV +D GAE++  Y SD+TRTF +    P+   R++Y+ V E QE
Sbjct  61   IPHYIPNDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVV--GKPSPEQRELYEAVLEAQE  118

Query  312  ECIKRIQKGVRFLDLQVLAHVIAIEGLMRLGILKGGSVEEIRESGASTVFFPHGLGHHVG  371
              I  ++ GV   D+       A E L   G+ +               +FPHGLGH +G
Sbjct  119  AAIAAVKPGVTGGDV----DAAAREVLEEAGLGE---------------YFPHGLGHGIG  159

Query  372  LEVHDVSAKRLTAVEGDKEYYSSILVPSMSHCPCTLSAPLLEEGMVVTVEPGIYFSRLAL  431
            LEVH+                     P +S         +LE GMV T+EPGIYF     
Sbjct  160  LEVHEG--------------------PYISRGGDD---RVLEPGMVFTIEPGIYF-----  191

Query  432  ANARKLAFAKYINFDEAEKYIP-IGGVRIEDDILVT  466
                                IP  GGVRIED +LVT
Sbjct  192  --------------------IPGWGGVRIEDTVLVT  207


>CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain.  This 
domain is structurally very similar to the creatinase N-terminal 
domain (pfam01321). However, little or no sequence similarity 
exists between the two families.
Length=121

 Score = 112 bits (284),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 41/121 (34%), Positives = 54/121 (45%), Gaps = 8/121 (7%)

Query  36   HARRVA---AKLGVSSGLIYLVGQPTINWGDSDQPRPFRQRRYFYYLSGVEEADCYLTY-  91
            +A R A   AKL   + +  L G P       D   PFRQ   FYYL+G  E D  L   
Sbjct  1    YAERRARLLAKLP-PNSVAILPGAPEKYRNG-DVFYPFRQDSDFYYLTGFNEPDAVLVLE  58

Query  92   --DIKNDLLTLYVPDFDLHRAIWMGPTLTVKEARERYDVDQVRYHASLKGDIQRWADNYN  149
              DI +   TL+VP  D    IW GP L  +EA+E + VD+V     L   + +     +
Sbjct  59   GGDIDSGKETLFVPPKDPEDEIWDGPRLGPEEAKELFGVDEVYPIDELDEVLPKLLKGRD  118

Query  150  K  150
             
Sbjct  119  T  119



Lambda      K        H        a         alpha
   0.320    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00007834

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  177     1e-54


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 177 bits (451),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 88/276 (32%), Positives = 122/276 (44%), Gaps = 72/276 (26%)

Query  82   RMIREANRVSALAHRKVLENVLRMSTEAEIEGLFLDT-CISHGAKNQAYEIIAGSGENAA  140
             ++R+A R++A A    L  +    TE E+            GA+  A+  I  SG NAA
Sbjct  1    ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGGARGPAFPPIVASGPNAA  60

Query  141  VLHYVKNNEPLQGRQLVCLDAGAEWN-CYASDVTRTFPLAADWPTARARDIYQLVEEMQE  199
            + HY+ N+  L+   LV +D GAE++  Y SD+TRTF +    P+   R++Y+ V E QE
Sbjct  61   IPHYIPNDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVV--GKPSPEQRELYEAVLEAQE  118

Query  200  ECIKRIQKGVRFLDLQVLAHVIAIEGLMRLGILKGGSVEEIRESGASTVFFPHGLGHHVG  259
              I  ++ GV   D+       A E L   G+ +               +FPHGLGH +G
Sbjct  119  AAIAAVKPGVTGGDV----DAAAREVLEEAGLGE---------------YFPHGLGHGIG  159

Query  260  LEVHDVSAKRLTAVEGDKEYYSSILVPSMSHCPCTLSAPLLEEGMVVTVEPGIYFSRLAL  319
            LEVH+                     P +S         +LE GMV T+EPGIYF     
Sbjct  160  LEVHEG--------------------PYISRGGDD---RVLEPGMVFTIEPGIYF-----  191

Query  320  ANARKLAFAKYINFDEAEKYIP-IGGVRIEDDILVT  354
                                IP  GGVRIED +LVT
Sbjct  192  --------------------IPGWGGVRIEDTVLVT  207



Lambda      K        H        a         alpha
   0.319    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00002584

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  80.6    1e-19
CDD:460740 pfam02889, Sec63, Sec63 Brl domain. This domain (also ...  75.7    1e-15


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 80.6 bits (200),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 7/69 (10%)

Query  20  DPYEILGISRSADEKAISRHYKRLSLIYHPDKIRPDPSKNETIETLNERFVELTKAYKAL  79
           D YEILG+S  A ++ I + Y++L+L YHPDK   DP          E+F E+ +AY+ L
Sbjct  1   DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEA-------EEKFKEINEAYEVL  53

Query  80  TDEEVRNNY  88
           +D E R  Y
Sbjct  54  SDPEKRAIY  62


>CDD:460740 pfam02889, Sec63, Sec63 Brl domain.  This domain (also known 
as the Brl domain) is required for assembly of functional endoplasmic 
reticulum translocons.
Length=307

 Score = 75.7 bits (187),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 50/230 (22%), Positives = 90/230 (39%), Gaps = 25/230 (11%)

Query  163  KEDITDGGIINALSAGVEFKDMLKGPRAEAGLAKLEKKVLAEGSILVPETRKTLSQMDDS  222
            K + T   ++  LS+  EF+  +   R E      EKK L +   L+ +    +    + 
Sbjct  26   KPNTTLADLLRILSSASEFEQ-IP-VRQE------EKKELKK---LLEKVPIPVKGDIED  74

Query  223  TRRKALALLWAYLGRIDLEDATLNGEKYEAAPIALSLNEAFIAISLAFGNLHPILGSFRT  282
               K   LL AY+ R+ L    L  +       A  +  A   I L+ G L   L +   
Sbjct  75   PHAKVNILLQAYISRLKLPGFALVSDMNYILQNAGRILRALFEILLSKGWLSAALTALDL  134

Query  283  SQHLIQAVAPGSSPLLQLPYFNNQVVKAIEGADAKDHYTVQKFMSLPEDKRRSLTVGAGL  342
             + + Q +    SPL Q P    +++K +E    K   +V+  + L + +     +G  +
Sbjct  135  CKMIEQRMWDSDSPLRQFPGIPPELIKKLE---KKGVESVRDILELDDAEE----LGELI  187

Query  343  LSEKQYSTAVSVAKQLPVLEVSRAFFKVMGEKVITPSSL-VQLVVKARFI  391
             + K          + P +E+     +V   + IT S L V++ +   F 
Sbjct  188  RNPKMGKDIAQFVNRFPKIEIE---AEV---QPITRSVLRVEVTITPDFP  231



Lambda      K        H        a         alpha
   0.317    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 620767060


Query= TCONS_00002585

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  177     1e-54


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 177 bits (451),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 88/276 (32%), Positives = 122/276 (44%), Gaps = 72/276 (26%)

Query  82   RMIREANRVSALAHRKVLENVLRMSTEAEIEGLFLDT-CISHGAKNQAYEIIAGSGENAA  140
             ++R+A R++A A    L  +    TE E+            GA+  A+  I  SG NAA
Sbjct  1    ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGGARGPAFPPIVASGPNAA  60

Query  141  VLHYVKNNEPLQGRQLVCLDAGAEWN-CYASDVTRTFPLAADWPTARARDIYQLVEEMQE  199
            + HY+ N+  L+   LV +D GAE++  Y SD+TRTF +    P+   R++Y+ V E QE
Sbjct  61   IPHYIPNDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVV--GKPSPEQRELYEAVLEAQE  118

Query  200  ECIKRIQKGVRFLDLQVLAHVIAIEGLMRLGILKGGSVEEIRESGASTVFFPHGLGHHVG  259
              I  ++ GV   D+       A E L   G+ +               +FPHGLGH +G
Sbjct  119  AAIAAVKPGVTGGDV----DAAAREVLEEAGLGE---------------YFPHGLGHGIG  159

Query  260  LEVHDVSAKRLTAVEGDKEYYSSILVPSMSHCPCTLSAPLLEEGMVVTVEPGIYFSRLAL  319
            LEVH+                     P +S         +LE GMV T+EPGIYF     
Sbjct  160  LEVHEG--------------------PYISRGGDD---RVLEPGMVFTIEPGIYF-----  191

Query  320  ANARKLAFAKYINFDEAEKYIP-IGGVRIEDDILVT  354
                                IP  GGVRIED +LVT
Sbjct  192  --------------------IPGWGGVRIEDTVLVT  207



Lambda      K        H        a         alpha
   0.319    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00002586

Length=697
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  80.6    2e-19
CDD:460740 pfam02889, Sec63, Sec63 Brl domain. This domain (also ...  75.7    2e-15


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 80.6 bits (200),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 7/69 (10%)

Query  105  DPYEILGISRSADEKAISRHYKRLSLIYHPDKIRPDPSKNETIETLNERFVELTKAYKAL  164
            D YEILG+S  A ++ I + Y++L+L YHPDK   DP          E+F E+ +AY+ L
Sbjct  1    DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEA-------EEKFKEINEAYEVL  53

Query  165  TDEEVRNNY  173
            +D E R  Y
Sbjct  54   SDPEKRAIY  62


>CDD:460740 pfam02889, Sec63, Sec63 Brl domain.  This domain (also known 
as the Brl domain) is required for assembly of functional endoplasmic 
reticulum translocons.
Length=307

 Score = 75.7 bits (187),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 50/230 (22%), Positives = 90/230 (39%), Gaps = 25/230 (11%)

Query  248  KEDITDGGIINALSAGVEFKDMLKGPRAEAGLAKLEKKVLAEGSILVPETRKTLSQMDDS  307
            K + T   ++  LS+  EF+  +   R E      EKK L +   L+ +    +    + 
Sbjct  26   KPNTTLADLLRILSSASEFEQ-IP-VRQE------EKKELKK---LLEKVPIPVKGDIED  74

Query  308  TRRKALALLWAYLGRIDLEDATLNGEKYEAAPIALSLNEAFIAISLAFGNLHPILGSFRT  367
               K   LL AY+ R+ L    L  +       A  +  A   I L+ G L   L +   
Sbjct  75   PHAKVNILLQAYISRLKLPGFALVSDMNYILQNAGRILRALFEILLSKGWLSAALTALDL  134

Query  368  SQHLIQAVAPGSSPLLQLPYFNNQVVKAIEGADAKDHYTVQKFMSLPEDKRRSLTVGAGL  427
             + + Q +    SPL Q P    +++K +E    K   +V+  + L + +     +G  +
Sbjct  135  CKMIEQRMWDSDSPLRQFPGIPPELIKKLE---KKGVESVRDILELDDAEE----LGELI  187

Query  428  LSEKQYSTAVSVAKQLPVLEVSRAFFKVMGEKVITPSSL-VQLVVKARFI  476
             + K          + P +E+     +V   + IT S L V++ +   F 
Sbjct  188  RNPKMGKDIAQFVNRFPKIEIE---AEV---QPITRSVLRVEVTITPDFP  231



Lambda      K        H        a         alpha
   0.316    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 890773160


Query= TCONS_00007839

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  80.6    1e-19
CDD:460740 pfam02889, Sec63, Sec63 Brl domain. This domain (also ...  75.7    1e-15


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 80.6 bits (200),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 7/69 (10%)

Query  20  DPYEILGISRSADEKAISRHYKRLSLIYHPDKIRPDPSKNETIETLNERFVELTKAYKAL  79
           D YEILG+S  A ++ I + Y++L+L YHPDK   DP          E+F E+ +AY+ L
Sbjct  1   DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEA-------EEKFKEINEAYEVL  53

Query  80  TDEEVRNNY  88
           +D E R  Y
Sbjct  54  SDPEKRAIY  62


>CDD:460740 pfam02889, Sec63, Sec63 Brl domain.  This domain (also known 
as the Brl domain) is required for assembly of functional endoplasmic 
reticulum translocons.
Length=307

 Score = 75.7 bits (187),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 50/230 (22%), Positives = 90/230 (39%), Gaps = 25/230 (11%)

Query  163  KEDITDGGIINALSAGVEFKDMLKGPRAEAGLAKLEKKVLAEGSILVPETRKTLSQMDDS  222
            K + T   ++  LS+  EF+  +   R E      EKK L +   L+ +    +    + 
Sbjct  26   KPNTTLADLLRILSSASEFEQ-IP-VRQE------EKKELKK---LLEKVPIPVKGDIED  74

Query  223  TRRKALALLWAYLGRIDLEDATLNGEKYEAAPIALSLNEAFIAISLAFGNLHPILGSFRT  282
               K   LL AY+ R+ L    L  +       A  +  A   I L+ G L   L +   
Sbjct  75   PHAKVNILLQAYISRLKLPGFALVSDMNYILQNAGRILRALFEILLSKGWLSAALTALDL  134

Query  283  SQHLIQAVAPGSSPLLQLPYFNNQVVKAIEGADAKDHYTVQKFMSLPEDKRRSLTVGAGL  342
             + + Q +    SPL Q P    +++K +E    K   +V+  + L + +     +G  +
Sbjct  135  CKMIEQRMWDSDSPLRQFPGIPPELIKKLE---KKGVESVRDILELDDAEE----LGELI  187

Query  343  LSEKQYSTAVSVAKQLPVLEVSRAFFKVMGEKVITPSSL-VQLVVKARFI  391
             + K          + P +E+     +V   + IT S L V++ +   F 
Sbjct  188  RNPKMGKDIAQFVNRFPKIEIE---AEV---QPITRSVLRVEVTITPDFP  231



Lambda      K        H        a         alpha
   0.317    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00007840

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  80.6    1e-19
CDD:460740 pfam02889, Sec63, Sec63 Brl domain. This domain (also ...  75.7    1e-15


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 80.6 bits (200),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 7/69 (10%)

Query  20  DPYEILGISRSADEKAISRHYKRLSLIYHPDKIRPDPSKNETIETLNERFVELTKAYKAL  79
           D YEILG+S  A ++ I + Y++L+L YHPDK   DP          E+F E+ +AY+ L
Sbjct  1   DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEA-------EEKFKEINEAYEVL  53

Query  80  TDEEVRNNY  88
           +D E R  Y
Sbjct  54  SDPEKRAIY  62


>CDD:460740 pfam02889, Sec63, Sec63 Brl domain.  This domain (also known 
as the Brl domain) is required for assembly of functional endoplasmic 
reticulum translocons.
Length=307

 Score = 75.7 bits (187),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 50/230 (22%), Positives = 90/230 (39%), Gaps = 25/230 (11%)

Query  163  KEDITDGGIINALSAGVEFKDMLKGPRAEAGLAKLEKKVLAEGSILVPETRKTLSQMDDS  222
            K + T   ++  LS+  EF+  +   R E      EKK L +   L+ +    +    + 
Sbjct  26   KPNTTLADLLRILSSASEFEQ-IP-VRQE------EKKELKK---LLEKVPIPVKGDIED  74

Query  223  TRRKALALLWAYLGRIDLEDATLNGEKYEAAPIALSLNEAFIAISLAFGNLHPILGSFRT  282
               K   LL AY+ R+ L    L  +       A  +  A   I L+ G L   L +   
Sbjct  75   PHAKVNILLQAYISRLKLPGFALVSDMNYILQNAGRILRALFEILLSKGWLSAALTALDL  134

Query  283  SQHLIQAVAPGSSPLLQLPYFNNQVVKAIEGADAKDHYTVQKFMSLPEDKRRSLTVGAGL  342
             + + Q +    SPL Q P    +++K +E    K   +V+  + L + +     +G  +
Sbjct  135  CKMIEQRMWDSDSPLRQFPGIPPELIKKLE---KKGVESVRDILELDDAEE----LGELI  187

Query  343  LSEKQYSTAVSVAKQLPVLEVSRAFFKVMGEKVITPSSL-VQLVVKARFI  391
             + K          + P +E+     +V   + IT S L V++ +   F 
Sbjct  188  RNPKMGKDIAQFVNRFPKIEIE---AEV---QPITRSVLRVEVTITPDFP  231



Lambda      K        H        a         alpha
   0.317    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0907    0.140     1.90     42.6     43.6 

Effective search space used: 617738928


Query= TCONS_00007841

Length=377
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  79.8    1e-19


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 79.8 bits (198),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 7/69 (10%)

Query  105  DPYEILGISRSADEKAISRHYKRLSLIYHPDKIRPDPSKNETIETLNERFVELTKAYKAL  164
            D YEILG+S  A ++ I + Y++L+L YHPDK   DP          E+F E+ +AY+ L
Sbjct  1    DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEA-------EEKFKEINEAYEVL  53

Query  165  TDEEVRNNY  173
            +D E R  Y
Sbjct  54   SDPEKRAIY  62



Lambda      K        H        a         alpha
   0.319    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 447362496


Query= TCONS_00007842

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  80.2    2e-19
CDD:460740 pfam02889, Sec63, Sec63 Brl domain. This domain (also ...  76.1    1e-15


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 80.2 bits (199),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 7/69 (10%)

Query  20  DPYEILGISRSADEKAISRHYKRLSLIYHPDKIRPDPSKNETIETLNERFVELTKAYKAL  79
           D YEILG+S  A ++ I + Y++L+L YHPDK   DP          E+F E+ +AY+ L
Sbjct  1   DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEA-------EEKFKEINEAYEVL  53

Query  80  TDEEVRNNY  88
           +D E R  Y
Sbjct  54  SDPEKRAIY  62


>CDD:460740 pfam02889, Sec63, Sec63 Brl domain.  This domain (also known 
as the Brl domain) is required for assembly of functional endoplasmic 
reticulum translocons.
Length=307

 Score = 76.1 bits (188),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 50/230 (22%), Positives = 90/230 (39%), Gaps = 25/230 (11%)

Query  163  KEDITDGGIINALSAGVEFKDMLKGPRAEAGLAKLEKKVLAEGSILVPETRKTLSQMDDS  222
            K + T   ++  LS+  EF+  +   R E      EKK L +   L+ +    +    + 
Sbjct  26   KPNTTLADLLRILSSASEFEQ-IP-VRQE------EKKELKK---LLEKVPIPVKGDIED  74

Query  223  TRRKALALLWAYLGRIDLEDATLNGEKYEAAPIALSLNEAFIAISLAFGNLHPILGSFRT  282
               K   LL AY+ R+ L    L  +       A  +  A   I L+ G L   L +   
Sbjct  75   PHAKVNILLQAYISRLKLPGFALVSDMNYILQNAGRILRALFEILLSKGWLSAALTALDL  134

Query  283  SQHLIQAVAPGSSPLLQLPYFNNQVVKAIEGADAKDHYTVQKFMSLPEDKRRSLTVGAGL  342
             + + Q +    SPL Q P    +++K +E    K   +V+  + L + +     +G  +
Sbjct  135  CKMIEQRMWDSDSPLRQFPGIPPELIKKLE---KKGVESVRDILELDDAEE----LGELI  187

Query  343  LSEKQYSTAVSVAKQLPVLEVSRAFFKVMGEKVITPSSL-VQLVVKARFI  391
             + K          + P +E+     +V   + IT S L V++ +   F 
Sbjct  188  RNPKMGKDIAQFVNRFPKIEIE---AEV---QPITRSVLRVEVTITPDFP  231



Lambda      K        H        a         alpha
   0.315    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 777102560


Query= TCONS_00007843

Length=665
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  80.6    2e-19
CDD:460740 pfam02889, Sec63, Sec63 Brl domain. This domain (also ...  74.9    4e-15


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 80.6 bits (200),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 7/69 (10%)

Query  105  DPYEILGISRSADEKAISRHYKRLSLIYHPDKIRPDPSKNETIETLNERFVELTKAYKAL  164
            D YEILG+S  A ++ I + Y++L+L YHPDK   DP          E+F E+ +AY+ L
Sbjct  1    DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEA-------EEKFKEINEAYEVL  53

Query  165  TDEEVRNNY  173
            +D E R  Y
Sbjct  54   SDPEKRAIY  62


>CDD:460740 pfam02889, Sec63, Sec63 Brl domain.  This domain (also known 
as the Brl domain) is required for assembly of functional endoplasmic 
reticulum translocons.
Length=307

 Score = 74.9 bits (185),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 50/230 (22%), Positives = 90/230 (39%), Gaps = 25/230 (11%)

Query  248  KEDITDGGIINALSAGVEFKDMLKGPRAEAGLAKLEKKVLAEGSILVPETRKTLSQMDDS  307
            K + T   ++  LS+  EF+  +   R E      EKK L +   L+ +    +    + 
Sbjct  26   KPNTTLADLLRILSSASEFEQ-IP-VRQE------EKKELKK---LLEKVPIPVKGDIED  74

Query  308  TRRKALALLWAYLGRIDLEDATLNGEKYEAAPIALSLNEAFIAISLAFGNLHPILGSFRT  367
               K   LL AY+ R+ L    L  +       A  +  A   I L+ G L   L +   
Sbjct  75   PHAKVNILLQAYISRLKLPGFALVSDMNYILQNAGRILRALFEILLSKGWLSAALTALDL  134

Query  368  SQHLIQAVAPGSSPLLQLPYFNNQVVKAIEGADAKDHYTVQKFMSLPEDKRRSLTVGAGL  427
             + + Q +    SPL Q P    +++K +E    K   +V+  + L + +     +G  +
Sbjct  135  CKMIEQRMWDSDSPLRQFPGIPPELIKKLE---KKGVESVRDILELDDAEE----LGELI  187

Query  428  LSEKQYSTAVSVAKQLPVLEVSRAFFKVMGEKVITPSSL-VQLVVKARFI  476
             + K          + P +E+     +V   + IT S L V++ +   F 
Sbjct  188  RNPKMGKDIAQFVNRFPKIEIE---AEV---QPITRSVLRVEVTITPDFP  231



Lambda      K        H        a         alpha
   0.318    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 843579880


Query= TCONS_00002587

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  139     6e-42
CDD:427663 pfam04030, ALO, D-arabinono-1,4-lactone oxidase. This ...  95.8    7e-24


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 139 bits (353),  Expect = 6e-42, Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 69/139 (50%), Gaps = 3/139 (2%)

Query  47   PELYIRPRSIAEIQKVVTLARRCRRRLVTVGSGHSPSDL-TCTSSWLVNLDDFNRILHID  105
            P   + P S  E+  +V LA      ++  G G S       T   +++L   N IL ID
Sbjct  1    PAAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGGAVQTGGIVLDLSRLNGILEID  60

Query  106  RETHVVTVEAGIRLRDLGRQLEEHGLTLS-NLGSIDSQSIAGVISTGTHGS-SLRHGLIS  163
             E    TVEAG+ L DL R L   GL L  + GS    ++ G I+T   G  S ++GL  
Sbjct  61   PEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLTR  120

Query  164  ECIISLTLMLANGQLVRCS  182
            + ++ L ++LA+G++VR  
Sbjct  121  DNVLGLEVVLADGEVVRLG  139


>CDD:427663 pfam04030, ALO, D-arabinono-1,4-lactone oxidase.  This domain 
is specific to D-arabinono-1,4-lactone oxidase EC:1.1.3.-, 
which is involved in the final step of the D-erythroascorbic 
acid biosynthesis pathway.
Length=258

 Score = 95.8 bits (239),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 32/79 (41%), Positives = 42/79 (53%), Gaps = 2/79 (3%)

Query  206  VTFQAEPIFKVAWRQTRRALSSVLAEWSSGLWTSHEFVRVWWMPYEKSAVVWHADKTDLP  265
            VT +  P F +   Q   +  ++L  W   L TS E  R WW PY   AVVW A+KTD P
Sbjct  1    VTLRVVPAFTLTSTQEVISFDTLLENWDE-LLTSSEHFRFWWFPYTDKAVVWRANKTDEP  59

Query  266  L-RKPPKTFYGEWIGYHIV  283
               +P K+ YGEW+G  + 
Sbjct  60   EQSRPRKSLYGEWLGNGVY  78



Lambda      K        H        a         alpha
   0.321    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00002588

Length=604


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 765147136


Query= TCONS_00002589

Length=794


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1018606400


Query= TCONS_00002590

Length=624


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 795035696


Query= TCONS_00002592

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  195     4e-60


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 195 bits (499),  Expect = 4e-60, Method: Composition-based stats.
 Identities = 72/171 (42%), Positives = 100/171 (58%), Gaps = 6/171 (4%)

Query  334  TPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTREL  393
            TPIQ + IP  L G+D++  A TGSGKT AF++P LE L          +  +L PTREL
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGP---QALVLAPTREL  57

Query  394  AVQCYNVATKLATHTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPSFT  453
            A Q Y    KL     +    L+GG S +EQ   LK  PD+++ TPGR +D ++      
Sbjct  58   AEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKG-PDILVGTPGRLLDLLQERKLL-  115

Query  454  VDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSVDKL  504
               L++LVLDEA R+L+ GF  +L EIL  +PK RQ +L SAT+  +++ L
Sbjct  116  -KNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165



Lambda      K        H        a         alpha
   0.310    0.130    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 763652708


Query= TCONS_00002591

Length=830
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  195     6e-59
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  118     3e-32


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 195 bits (499),  Expect = 6e-59, Method: Composition-based stats.
 Identities = 72/171 (42%), Positives = 100/171 (58%), Gaps = 6/171 (4%)

Query  334  TPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTREL  393
            TPIQ + IP  L G+D++  A TGSGKT AF++P LE L          +  +L PTREL
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGP---QALVLAPTREL  57

Query  394  AVQCYNVATKLATHTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPSFT  453
            A Q Y    KL     +    L+GG S +EQ   LK  PD+++ TPGR +D ++      
Sbjct  58   AEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKG-PDILVGTPGRLLDLLQERKLL-  115

Query  454  VDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSVDKL  504
               L++LVLDEA R+L+ GF  +L EIL  +PK RQ +L SAT+  +++ L
Sbjct  116  -KNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 118 bits (299),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 45/110 (41%), Positives = 71/110 (65%), Gaps = 1/110 (1%)

Query  541  KRLGYLLYLCNEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVEN  600
            ++L  LL L  +   G+V++F + K+      ++    G+K A LHG +SQE+R + +E+
Sbjct  1    EKLEALLELLKKERGGKVLIFSQTKKTLE-AELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  601  FREGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAG  650
            FR+GK+  L+ATD+A RGLD+  V+ VINY+ P +   Y+ R+GR  RAG
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.310    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1055102790


Query= TCONS_00007844

Length=1191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 118     1e-28


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 118 bits (297),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 105/550 (19%), Positives = 176/550 (32%), Gaps = 152/550 (28%)

Query  185  LRHRARVHPKQPAYWVLDQKGKEIASITWEKLASRAEKVAQVVRDKSNLYRGDRVALIYR  244
            L  +A   P + A  V + +      +T+ +L  RA ++A  +R    + +GDRVA++  
Sbjct  1    LERQAARTPDKTALEVGEGR-----RLTYRELDERANRLAAGLRAL-GVGKGDRVAILLP  54

Query  245  DSEIIEFAVALMGCFIAGVVAVPINNLEDYQSLNLVLTSTQAHLALTTENNLKSFQRDIT  304
            +S   E+ VA + C  AG V VP+N     + L  +L  + A + +T +        +  
Sbjct  55   NS--PEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEA-  111

Query  305  MQKLNWPRGVEWWKTNEFGSYHP-----KRKDDIPALVVP----DLAYIEFTRAPTGDMR  355
            + KL   + V     +      P     K  D  P    P    DLAYI +T   TG  +
Sbjct  112  LGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPK  171

Query  356  GVVMSHRTIMHQMACLSAIIATVPGSGKSVRPHGETLISYLDPRQGIGMILGVLLTVYGG  415
            GV+++HR ++  +  +  +     G G       + ++S L      G+ LG+L  +  G
Sbjct  172  GVMLTHRNLVANVLSIKRVRPRGFGLG-----PDDRVLSTLPLFHDFGLSLGLLGPLLAG  226

Query  416  HTTVWLEDRAVETPGLYAHLVTKYRATLMAADYPGLKITAYNYQQDPMATRHFKKNSEPN  475
             T V         P     L+ +Y+ T++                               
Sbjct  227  ATVVLPPGFPALDPAALLELIERYKVTVLYG-----------------------------  257

Query  476  FENVKLCLIDTLTVDAEFHEILADRWLRPMRNPRAREIVAPMLCLPEHGGMVISVRDWLG  535
                         V    + +L     +       R +++        GG  +       
Sbjct  258  -------------VPTLLNMLLEAGAPKRALLSSLRLVLS--------GGAPLPPELARR  296

Query  536  GEERLGCPLTHEMDPAERSEAADAKKEERKSENNSGFGSSLLGGGVRASPAPKEQNKNEL  595
              E  G  L +     E                               +           
Sbjct  297  FRELFGGALVNGYGLTE------------------------------TTG----------  316

Query  596  GEVLLDKEALKSNEVVVLAMGEDARKYAATMPNAVRVGSFGYPIPDATLAVVDPETNLLC  655
                          VV   +  D             +GS G P+P   + +VD ET    
Sbjct  317  --------------VVTTPLPLDED--------LRSLGSVGRPLPGTEVKIVDDETGEPV  354

Query  656  TPNVIGEIWVDSPSLSGGFWALPKHTEAIFHARPYKFEEGNPTPVLVEPEFLRTGLLGCV  715
             P   GE+ V  P +  G+   P+ T   F                 E  + RTG LG  
Sbjct  355  PPGEPGELCVRGPGVMKGYLNDPELTAEAF----------------DEDGWYRTGDLGRR  398

Query  716  IE-GKIFVLG  724
             E G + ++G
Sbjct  399  DEDGYLEIVG  408



Lambda      K        H        a         alpha
   0.319    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1527484372


Query= TCONS_00002593

Length=830
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  195     6e-59
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  118     3e-32


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 195 bits (499),  Expect = 6e-59, Method: Composition-based stats.
 Identities = 72/171 (42%), Positives = 100/171 (58%), Gaps = 6/171 (4%)

Query  334  TPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTREL  393
            TPIQ + IP  L G+D++  A TGSGKT AF++P LE L          +  +L PTREL
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGP---QALVLAPTREL  57

Query  394  AVQCYNVATKLATHTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPSFT  453
            A Q Y    KL     +    L+GG S +EQ   LK  PD+++ TPGR +D ++      
Sbjct  58   AEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKG-PDILVGTPGRLLDLLQERKLL-  115

Query  454  VDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSVDKL  504
               L++LVLDEA R+L+ GF  +L EIL  +PK RQ +L SAT+  +++ L
Sbjct  116  -KNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 118 bits (299),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 45/110 (41%), Positives = 71/110 (65%), Gaps = 1/110 (1%)

Query  541  KRLGYLLYLCNEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVEN  600
            ++L  LL L  +   G+V++F + K+      ++    G+K A LHG +SQE+R + +E+
Sbjct  1    EKLEALLELLKKERGGKVLIFSQTKKTLE-AELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  601  FREGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAG  650
            FR+GK+  L+ATD+A RGLD+  V+ VINY+ P +   Y+ R+GR  RAG
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.310    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1055102790


Query= TCONS_00002594

Length=1191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 118     1e-28


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 118 bits (297),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 105/550 (19%), Positives = 176/550 (32%), Gaps = 152/550 (28%)

Query  185  LRHRARVHPKQPAYWVLDQKGKEIASITWEKLASRAEKVAQVVRDKSNLYRGDRVALIYR  244
            L  +A   P + A  V + +      +T+ +L  RA ++A  +R    + +GDRVA++  
Sbjct  1    LERQAARTPDKTALEVGEGR-----RLTYRELDERANRLAAGLRAL-GVGKGDRVAILLP  54

Query  245  DSEIIEFAVALMGCFIAGVVAVPINNLEDYQSLNLVLTSTQAHLALTTENNLKSFQRDIT  304
            +S   E+ VA + C  AG V VP+N     + L  +L  + A + +T +        +  
Sbjct  55   NS--PEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEA-  111

Query  305  MQKLNWPRGVEWWKTNEFGSYHP-----KRKDDIPALVVP----DLAYIEFTRAPTGDMR  355
            + KL   + V     +      P     K  D  P    P    DLAYI +T   TG  +
Sbjct  112  LGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPK  171

Query  356  GVVMSHRTIMHQMACLSAIIATVPGSGKSVRPHGETLISYLDPRQGIGMILGVLLTVYGG  415
            GV+++HR ++  +  +  +     G G       + ++S L      G+ LG+L  +  G
Sbjct  172  GVMLTHRNLVANVLSIKRVRPRGFGLG-----PDDRVLSTLPLFHDFGLSLGLLGPLLAG  226

Query  416  HTTVWLEDRAVETPGLYAHLVTKYRATLMAADYPGLKITAYNYQQDPMATRHFKKNSEPN  475
             T V         P     L+ +Y+ T++                               
Sbjct  227  ATVVLPPGFPALDPAALLELIERYKVTVLYG-----------------------------  257

Query  476  FENVKLCLIDTLTVDAEFHEILADRWLRPMRNPRAREIVAPMLCLPEHGGMVISVRDWLG  535
                         V    + +L     +       R +++        GG  +       
Sbjct  258  -------------VPTLLNMLLEAGAPKRALLSSLRLVLS--------GGAPLPPELARR  296

Query  536  GEERLGCPLTHEMDPAERSEAADAKKEERKSENNSGFGSSLLGGGVRASPAPKEQNKNEL  595
              E  G  L +     E                               +           
Sbjct  297  FRELFGGALVNGYGLTE------------------------------TTG----------  316

Query  596  GEVLLDKEALKSNEVVVLAMGEDARKYAATMPNAVRVGSFGYPIPDATLAVVDPETNLLC  655
                          VV   +  D             +GS G P+P   + +VD ET    
Sbjct  317  --------------VVTTPLPLDED--------LRSLGSVGRPLPGTEVKIVDDETGEPV  354

Query  656  TPNVIGEIWVDSPSLSGGFWALPKHTEAIFHARPYKFEEGNPTPVLVEPEFLRTGLLGCV  715
             P   GE+ V  P +  G+   P+ T   F                 E  + RTG LG  
Sbjct  355  PPGEPGELCVRGPGVMKGYLNDPELTAEAF----------------DEDGWYRTGDLGRR  398

Query  716  IE-GKIFVLG  724
             E G + ++G
Sbjct  399  DEDGYLEIVG  408



Lambda      K        H        a         alpha
   0.319    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1527484372


Query= TCONS_00007846

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  253     2e-81
CDD:400689 pfam08502, LeuA_dimer, LeuA allosteric (dimerization) ...  79.5    1e-18


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 253 bits (647),  Expect = 2e-81, Method: Composition-based stats.
 Identities = 92/256 (36%), Positives = 126/256 (49%), Gaps = 22/256 (9%)

Query  1    MLVDIGYKEIEVSFPSASQTDFDFTRRLVETPGVVPDDVWLQVLSPCREELIRRTVDSLK  60
             L   G  EIEV FP+AS+ DF+  R + +          + VL   RE  I+  V++LK
Sbjct  31   ALDAAGVDEIEVGFPAASEDDFEVVRAIAKVIPHAR----ILVLCRAREHDIKAAVEALK  86

Query  61   GAKKAILHIYLATSPCFRRIVFGTTREQSLEIAVRCTKYARSITKDDPEMAGTQWQFEFS  120
            GA    +H+++ATS   R+   G  RE+  + AV   K ARS   D           EFS
Sbjct  87   GAGAVRVHVFIATSDLHRKYKLGKDREEVAKRAVAAVKAARSRGID----------VEFS  136

Query  121  PETFSDTEPEFAVQICEAVKAAWGPTEESPIIFNLPATVEMTTPNVFADQVEYFCRNMTE  180
            PE  S T+PEF  ++ EA   A           N+P TV + TPN  A+ +      +  
Sbjct  137  PEDASRTDPEFLAEVVEAAIEA------GATRINIPDTVGVLTPNEAAELISALKARVPN  190

Query  181  REKFVVSVHPHNDRGCAVAAAELAQMAGAQRVEGTLFGNGERTGNVDLVTLALNLYTQGV  240
              K ++SVH HND G AVA +  A  AGA RV+GT+ G GER GN  L  +A  L   GV
Sbjct  191  --KAIISVHCHNDLGMAVANSLAAVEAGADRVDGTVNGIGERAGNAALEEVAAALEGLGV  248

Query  241  SPQVDFSDINSVIKVV  256
               +D   + S+  +V
Sbjct  249  DTGLDLQRLRSIANLV  264


>CDD:400689 pfam08502, LeuA_dimer, LeuA allosteric (dimerization) domain. 
 This is the C-terminal regulatory (R) domain of alpha-isopropylmalate 
synthase, which catalyzes the first committed step 
in the leucine biosynthetic pathway. This domain, is an internally 
duplicated structure with a novel fold. It comprises 
two similar units that are arranged such that the two -helices 
pack together in the centre, crossing at an angle of 34 
degrees, sandwiched between the two three-stranded, antiparallel 
beta-sheets. The overall domain is thus constructed as 
a beta-alpha-beta three-layer sandwich.
Length=112

 Score = 79.5 bits (197),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 37/124 (30%), Positives = 58/124 (47%), Gaps = 19/124 (15%)

Query  391  RFNLVDYNITTDRSQSPAPPEPGKALNTKNLKRRFTGIIEIDNIQHAITGVGPGAISSLA  450
            R+ L    +++   + P       A          T  +E+D  +      G G + +L 
Sbjct  2    RYKLESLQVSSGTGERP------TA----------TVKLEVDGEEKEEAAEGNGPVDALY  45

Query  451  NAL-STLGIDLDVIDYKEHSIGLGRDVKAATYLQCTAAGSKEQVWGVGIHQDVVQASLIA  509
            NAL   LG+D+ ++DY  H+I  G D  A  Y++    G    VWGVG+  D+V+AS  A
Sbjct  46   NALRKALGVDIKLLDYSVHAITGGTDALAEVYVELEDDG--RIVWGVGVDTDIVEASAKA  103

Query  510  LLSA  513
             +SA
Sbjct  104  YVSA  107



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00002597

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425505 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e. Th...  177     6e-58


>CDD:425505 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e.  This family 
contains ribosomal protein S7 from prokaryotes and S5 from 
eukaryotes.
Length=132

 Score = 177 bits (452),  Expect = 6e-58, Method: Composition-based stats.
 Identities = 59/141 (42%), Positives = 81/141 (57%), Gaps = 9/141 (6%)

Query  75   AQCPIIERLTNSLMMNGRNNGKKLMAVRIVAHAFEIIHIMTDQNPLQVAVDAIVNCGPRE  134
               P++E+L N LM +G    KK +A RIV  AF+II   T +NPL+V V A+ N  PR 
Sbjct  1    YNSPLVEKLINRLMRDG----KKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRV  56

Query  135  DSTRIGSAGTVRRQAVDVSPLRRVNQAIALLTIGAREASFRNIKSIAECLAEELINAAKG  194
            +       G   +  V+V P RRV  A+  +   AR    R+ KS+AE LA ELI+AA G
Sbjct  57   EVKSRRVGGATYQVPVEVRPERRVALALRWIIEAAR---KRSEKSMAERLANELIDAANG  113

Query  195  SSNSYAIKKKDELERVAKSNR  215
                 A+KKK+E  R+A++NR
Sbjct  114  R--GAAVKKKEETHRMAEANR  132



Lambda      K        H        a         alpha
   0.318    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00007847

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425505 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e. Th...  129     7e-41


>CDD:425505 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e.  This family 
contains ribosomal protein S7 from prokaryotes and S5 from 
eukaryotes.
Length=132

 Score = 129 bits (327),  Expect = 7e-41, Method: Composition-based stats.
 Identities = 42/101 (42%), Positives = 58/101 (57%), Gaps = 5/101 (5%)

Query  2    TDQNPLQVAVDAIVNCGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAIALLTIGAREASF  61
            T +NPL+V V A+ N  PR +       G   +  V+V P RRV  A+  +   AR    
Sbjct  37   TGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERRVALALRWIIEAAR---K  93

Query  62   RNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR  102
            R+ KS+AE LA ELI+AA G     A+KKK+E  R+A++NR
Sbjct  94   RSEKSMAERLANELIDAANGR--GAAVKKKEETHRMAEANR  132



Lambda      K        H        a         alpha
   0.313    0.127    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00002596

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425505 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e. Th...  129     7e-41


>CDD:425505 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e.  This family 
contains ribosomal protein S7 from prokaryotes and S5 from 
eukaryotes.
Length=132

 Score = 129 bits (327),  Expect = 7e-41, Method: Composition-based stats.
 Identities = 42/101 (42%), Positives = 58/101 (57%), Gaps = 5/101 (5%)

Query  2    TDQNPLQVAVDAIVNCGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAIALLTIGAREASF  61
            T +NPL+V V A+ N  PR +       G   +  V+V P RRV  A+  +   AR    
Sbjct  37   TGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERRVALALRWIIEAAR---K  93

Query  62   RNIKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR  102
            R+ KS+AE LA ELI+AA G     A+KKK+E  R+A++NR
Sbjct  94   RSEKSMAERLANELIDAANGR--GAAVKKKEETHRMAEANR  132



Lambda      K        H        a         alpha
   0.313    0.127    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00007848

Length=748
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461611 pfam05285, SDA1, SDA1. This family consists of several...  302     2e-98
CDD:462384 pfam08158, NUC130_3NT, NUC130/3NT domain. This N termi...  100     2e-26


>CDD:461611 pfam05285, SDA1, SDA1.  This family consists of several SDA1 
protein homologs. SDA1 is a Saccharomyces cerevisiae protein 
which is involved in the control of the actin cytoskeleton. 
The protein is essential for cell viability and is localized 
in the nucleus.
Length=257

 Score = 302 bits (777),  Expect = 2e-98, Method: Composition-based stats.
 Identities = 166/322 (52%), Positives = 205/322 (64%), Gaps = 68/322 (21%)

Query  422  MNETLLQDLVMYRKSKDKGVVMAARGLLSLYRDVGADMLKRRDRGKEASMSLRAGEKKER  481
            MNE LLQDLV Y+KSKDKGV+MAAR L+SLYR+V  ++LK++DRGK A+M LR  E+K  
Sbjct  1    MNEDLLQDLVEYKKSKDKGVMMAARSLISLYREVNPELLKKKDRGKPATMGLR--ERKPL  58

Query  482  RFGEQQTGE-IEGLELLEKWKEEERRKRRIEKGLPSDAEDDEDDEAEDDAAWERWNIEED  540
            +FGE++ G+ IEGLELLEKWKEEER+++R E+               D+  WE W +E D
Sbjct  59   KFGEEEVGDGIEGLELLEKWKEEERKRKREEE---------------DEDDWEDWEVESD  103

Query  541  EDSDDS-GGWIDVESDAEIELSDSDDDESPPAKKAKQGDEEEGKAKSETAKPETKKTNLA  599
            +DSDDS GGWIDVESD EIE+SDS                                  LA
Sbjct  104  DDSDDSEGGWIDVESDDEIEISDS----------------------------------LA  129

Query  600  TTRILTPADLAKLAELRSEAAVNSLLPKRLRSDQKNGPSRHADDPLTAAEIEGLAALSAG  659
            TTRILTPAD AKL ELR+EAAV   L    R        R  D+ +TA++IEG A     
Sbjct  130  TTRILTPADFAKLQELRAEAAVKKALGSAKR--------RKKDELVTASDIEGPAK--KR  179

Query  660  KATREERIAHAKEGK-DRSEYKSVTARRKERKEAQGKSTTNKEKARRKNLFMTLGKAKSK  718
            K T+EERIA  KEG+ DR ++ S    +K +KEA GKSTTNKEKAR+KN  MTL KAK K
Sbjct  180  KQTKEERIASVKEGREDREKFGS----KKAKKEAPGKSTTNKEKARKKNFMMTLHKAKGK  235

Query  719  NKRSLVETRNILRAHQQRQKRG  740
             KRSL + + +LRAH +RQK+G
Sbjct  236  KKRSLRDKQKVLRAHIERQKKG  257


>CDD:462384 pfam08158, NUC130_3NT, NUC130/3NT domain.  This N terminal domain 
is found in a novel nucleolar protein family.
Length=50

 Score = 100 bits (252),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 30/50 (60%), Positives = 40/50 (80%), Gaps = 0/50 (0%)

Query  69   FIAHVADCYPTITKEFPQQLMDILTQHHLVLEPELREKIVGSLVLLRKKE  118
            F+A VA CYP  T EFPQ+L+D+L  HH VL+P+LREK+V +L+LLR K+
Sbjct  1    FLAQVAHCYPKETAEFPQELIDLLLNHHAVLDPDLREKLVQALILLRNKD  50



Lambda      K        H        a         alpha
   0.313    0.129    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 951669408


Query= TCONS_00002598

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425505 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e. Th...  178     4e-58


>CDD:425505 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e.  This family 
contains ribosomal protein S7 from prokaryotes and S5 from 
eukaryotes.
Length=132

 Score = 178 bits (455),  Expect = 4e-58, Method: Composition-based stats.
 Identities = 59/141 (42%), Positives = 81/141 (57%), Gaps = 9/141 (6%)

Query  91   AQCPIIERLTNSLMMNGRNNGKKLMAVRIVAHAFEIIHIMTDQNPLQVAVDAIVNCGPRE  150
               P++E+L N LM +G    KK +A RIV  AF+II   T +NPL+V V A+ N  PR 
Sbjct  1    YNSPLVEKLINRLMRDG----KKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRV  56

Query  151  DSTRIGSAGTVRRQAVDVSPLRRVNQAIALLTIGAREASFRNIKSIAECLAEELINAAKG  210
            +       G   +  V+V P RRV  A+  +   AR    R+ KS+AE LA ELI+AA G
Sbjct  57   EVKSRRVGGATYQVPVEVRPERRVALALRWIIEAAR---KRSEKSMAERLANELIDAANG  113

Query  211  SSNSYAIKKKDELERVAKSNR  231
                 A+KKK+E  R+A++NR
Sbjct  114  R--GAAVKKKEETHRMAEANR  132



Lambda      K        H        a         alpha
   0.318    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00002599

Length=748
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461611 pfam05285, SDA1, SDA1. This family consists of several...  302     2e-98
CDD:462384 pfam08158, NUC130_3NT, NUC130/3NT domain. This N termi...  100     2e-26


>CDD:461611 pfam05285, SDA1, SDA1.  This family consists of several SDA1 
protein homologs. SDA1 is a Saccharomyces cerevisiae protein 
which is involved in the control of the actin cytoskeleton. 
The protein is essential for cell viability and is localized 
in the nucleus.
Length=257

 Score = 302 bits (777),  Expect = 2e-98, Method: Composition-based stats.
 Identities = 166/322 (52%), Positives = 205/322 (64%), Gaps = 68/322 (21%)

Query  422  MNETLLQDLVMYRKSKDKGVVMAARGLLSLYRDVGADMLKRRDRGKEASMSLRAGEKKER  481
            MNE LLQDLV Y+KSKDKGV+MAAR L+SLYR+V  ++LK++DRGK A+M LR  E+K  
Sbjct  1    MNEDLLQDLVEYKKSKDKGVMMAARSLISLYREVNPELLKKKDRGKPATMGLR--ERKPL  58

Query  482  RFGEQQTGE-IEGLELLEKWKEEERRKRRIEKGLPSDAEDDEDDEAEDDAAWERWNIEED  540
            +FGE++ G+ IEGLELLEKWKEEER+++R E+               D+  WE W +E D
Sbjct  59   KFGEEEVGDGIEGLELLEKWKEEERKRKREEE---------------DEDDWEDWEVESD  103

Query  541  EDSDDS-GGWIDVESDAEIELSDSDDDESPPAKKAKQGDEEEGKAKSETAKPETKKTNLA  599
            +DSDDS GGWIDVESD EIE+SDS                                  LA
Sbjct  104  DDSDDSEGGWIDVESDDEIEISDS----------------------------------LA  129

Query  600  TTRILTPADLAKLAELRSEAAVNSLLPKRLRSDQKNGPSRHADDPLTAAEIEGLAALSAG  659
            TTRILTPAD AKL ELR+EAAV   L    R        R  D+ +TA++IEG A     
Sbjct  130  TTRILTPADFAKLQELRAEAAVKKALGSAKR--------RKKDELVTASDIEGPAK--KR  179

Query  660  KATREERIAHAKEGK-DRSEYKSVTARRKERKEAQGKSTTNKEKARRKNLFMTLGKAKSK  718
            K T+EERIA  KEG+ DR ++ S    +K +KEA GKSTTNKEKAR+KN  MTL KAK K
Sbjct  180  KQTKEERIASVKEGREDREKFGS----KKAKKEAPGKSTTNKEKARKKNFMMTLHKAKGK  235

Query  719  NKRSLVETRNILRAHQQRQKRG  740
             KRSL + + +LRAH +RQK+G
Sbjct  236  KKRSLRDKQKVLRAHIERQKKG  257


>CDD:462384 pfam08158, NUC130_3NT, NUC130/3NT domain.  This N terminal domain 
is found in a novel nucleolar protein family.
Length=50

 Score = 100 bits (252),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 30/50 (60%), Positives = 40/50 (80%), Gaps = 0/50 (0%)

Query  69   FIAHVADCYPTITKEFPQQLMDILTQHHLVLEPELREKIVGSLVLLRKKE  118
            F+A VA CYP  T EFPQ+L+D+L  HH VL+P+LREK+V +L+LLR K+
Sbjct  1    FLAQVAHCYPKETAEFPQELIDLLLNHHAVLDPDLREKLVQALILLRNKD  50



Lambda      K        H        a         alpha
   0.313    0.129    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 951669408


Query= TCONS_00002600

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461611 pfam05285, SDA1, SDA1. This family consists of several...  293     2e-96


>CDD:461611 pfam05285, SDA1, SDA1.  This family consists of several SDA1 
protein homologs. SDA1 is a Saccharomyces cerevisiae protein 
which is involved in the control of the actin cytoskeleton. 
The protein is essential for cell viability and is localized 
in the nucleus.
Length=257

 Score = 293 bits (753),  Expect = 2e-96, Method: Composition-based stats.
 Identities = 166/322 (52%), Positives = 205/322 (64%), Gaps = 68/322 (21%)

Query  272  MNETLLQDLVMYRKSKDKGVVMAARGLLSLYRDVGADMLKRRDRGKEASMSLRAGEKKER  331
            MNE LLQDLV Y+KSKDKGV+MAAR L+SLYR+V  ++LK++DRGK A+M LR  E+K  
Sbjct  1    MNEDLLQDLVEYKKSKDKGVMMAARSLISLYREVNPELLKKKDRGKPATMGLR--ERKPL  58

Query  332  RFGEQQTGE-IEGLELLEKWKEEERRKRRIEKGLPSDAEDDEDDEAEDDAAWERWNIEED  390
            +FGE++ G+ IEGLELLEKWKEEER+++R E+               D+  WE W +E D
Sbjct  59   KFGEEEVGDGIEGLELLEKWKEEERKRKREEE---------------DEDDWEDWEVESD  103

Query  391  EDSDDS-GGWIDVESDAEIELSDSDDDESPPAKKAKQGDEEEGKAKSETAKPETKKTNLA  449
            +DSDDS GGWIDVESD EIE+SDS                                  LA
Sbjct  104  DDSDDSEGGWIDVESDDEIEISDS----------------------------------LA  129

Query  450  TTRILTPADLAKLAELRSEAAVNSLLPKRLRSDQKNGPSRHADDPLTAAEIEGLAALSAG  509
            TTRILTPAD AKL ELR+EAAV   L    R        R  D+ +TA++IEG A     
Sbjct  130  TTRILTPADFAKLQELRAEAAVKKALGSAKR--------RKKDELVTASDIEGPAK--KR  179

Query  510  KATREERIAHAKEGK-DRSEYKSVTARRKERKEAQGKSTTNKEKARRKNLFMTLGKAKSK  568
            K T+EERIA  KEG+ DR ++ S    +K +KEA GKSTTNKEKAR+KN  MTL KAK K
Sbjct  180  KQTKEERIASVKEGREDREKFGS----KKAKKEAPGKSTTNKEKARKKNFMMTLHKAKGK  235

Query  569  NKRSLVETRNILRAHQQRQKRG  590
             KRSL + + +LRAH +RQK+G
Sbjct  236  KKRSLRDKQKVLRAHIERQKKG  257



Lambda      K        H        a         alpha
   0.311    0.127    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00002601

Length=997
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  208     5e-58


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 208 bits (532),  Expect = 5e-58, Method: Composition-based stats.
 Identities = 175/745 (23%), Positives = 288/745 (39%), Gaps = 156/745 (21%)

Query  42   VLGVDVGTEYIKAALVKPGIPLEIVLTKDSKRKESAAVAFKPTRESNAPFPERFYGGDAL  101
            V+G+D+GT     A+++ G P E++   +  R   + VAF P         ER  G  A 
Sbjct  1    VIGIDLGTTNSCVAVMEGGGP-EVIANAEGNRTTPSVVAFTPK--------ERLVGQAAK  51

Query  102  ALAARYPDDVYANLKALLGVQFQNGDNEMVKTYHNRYPALRLEAAPGDRDTVGLRSNRLG  161
              A   P +   ++K L+G +F +   +           L  +         G+    LG
Sbjct  52   NQAVTNPKNTVFSVKRLIGRKFSDPVVQ------RDIKHLPYKVVKLPNGDAGVEVRYLG  105

Query  162  EAERKDAFLVEELLAMQLKQIKGNADSLAGKGSDVRDVIITYPSFYTAEEKRSLELAAEL  221
            E      F  E++ AM L+++K  A++  GK   V D +IT P+++   ++++ + A ++
Sbjct  106  ET-----FTPEQISAMILQKLKETAEAYLGK--PVTDAVITVPAYFNDAQRQATKDAGQI  158

Query  222  AGLKVEALISDNLAVGLNYATSRTFPSVSEGQKPEYHIIYDMGAGSTTASVIRFQSRAVK  281
            AGL V  ++++  A  L Y   +T        K     +YD+G G+   S++        
Sbjct  159  AGLNVLRIVNEPTAAALAYGLDKT-------DKERNIAVYDLGGGTFDVSILEIGR----  207

Query  282  DVGKFNKTVQEVQVLGTGWDRTLGGDSLNDLIVHDMVANLAEDKKLKGRATPAEIQAHGK  341
              G F       +V  T  D  LGG+  +  +V  +     +   +             +
Sbjct  208  --GVF-------EVKATNGDTHLGGEDFDLRLVDHLAEEFKKKYGIDLSKDK-------R  251

Query  342  TMARLWKDAEKVRQVLSAN-TETGASFESLYEEDLNFKYRITRSKFEELAADHIARIGGP  400
             + RL + AEK +  LS+N T     F +   +  +    +TR+KFEEL AD   R   P
Sbjct  252  ALQRLREAAEKAKIELSSNQTNINLPFITAMADGKDVSGTLTRAKFEELVADLFERTLEP  311

Query  401  IERSLAAAGLQLSDIDSIILHGGAIRTPFVQKELERITGSSEKIRTSVNADEAAVFGAAF  460
            +E++L  AGL  S+ID ++L GG+ R P VQ+ ++   G  ++    VN DEA   GAA 
Sbjct  312  VEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKEFFG--KEPSKGVNPDEAVAIGAAV  369

Query  461  KGAALSPSFRVKDIRASDVS--SYAVLLKWASETK--ERQQKLFTPTSQVGPEKQVTMKN  516
            +   LS +F VKD    DV+  S  +       TK   R   + T  SQ+          
Sbjct  370  QAGVLSGTFDVKDFLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQI----------  419

Query  517  LDDFEFSFYQQIPTADEVVELPVVRVQTQNLTASVSQLKEKFGCLPANITTKFSMRLSPV  576
                 FS                        TA+ +Q             T   +++   
Sbjct  420  -----FS------------------------TAADNQ-------------TAVEIQVY--  435

Query  577  DGLPEVTGGSVSCEFEVKKGGVVEDVKGFFGLGSKKDEQTPLGEEGEPTESITLEAEEPQ  636
             G  E+   +                     LGS + +  P    G P   +T + +   
Sbjct  436  QGEREMAPDNKL-------------------LGSFELDGIPPAPRGVPQIEVTFDIDANG  476

Query  637  VSTTSSAAEASTTSTKETKKASPQIKVELIPVSFTTSSLGTPALSDSEMTRIQTRLSAFD  696
            + T S+         K T       K + I +    +S G   LSD E+ R+      + 
Sbjct  477  ILTVSAK-------DKGTG------KEQEITI---EASEG---LSDDEIERMVKDAEEYA  517

Query  697  ASDRDRILREEALNELESFIYRSRD-LADDEEFVKALRADQLAELQEKTAFASDWLDGDG  755
              D+ R  R EA NE E ++Y     L ++ + V           + K   A +WL  + 
Sbjct  518  EEDKKRKERIEAKNEAEEYVYSLEKSLEEEGDKV-------PEAEKSKVESAIEWLKDEL  570

Query  756  ADATTSEFRAKLKSLKDIVNPALRR  780
                  E  AK + L  +      R
Sbjct  571  EGDDKEEIEAKTEELAQVSQKIGER  595



Lambda      K        H        a         alpha
   0.310    0.127    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1275704276


Query= TCONS_00002602

Length=619


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787563556


Query= TCONS_00007849

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00007850

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461600 pfam05241, EBP, Emopamil binding protein. Emopamil bin...  85.7    3e-23


>CDD:461600 pfam05241, EBP, Emopamil binding protein.  Emopamil binding protein 
(EBP) is as a gene that encodes a non-glycosylated type 
I integral membrane protein of endoplasmic reticulum and 
shows high level expression in epithelial tissues. The EBP protein 
has emopamil binding domains, including the sterol acceptor 
site and the catalytic centre, which show Delta8-Delta7 
sterol isomerase activity. Human sterol isomerase, a homolog 
of mouse EBP, is suggested not only to play a role in cholesterol 
biosynthesis, but also to affect lipoprotein internalisation. 
In humans, mutations of EBP are known to cause the 
genetic disorder of X-linked dominant chondrodysplasia punctata 
(CDPX2). This syndrome of humans is lethal in most males, 
and affected females display asymmetric hyperkeratotic 
skin and skeletal abnormalities.
Length=112

 Score = 85.7 bits (213),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 43/120 (36%), Positives = 55/120 (46%), Gaps = 13/120 (11%)

Query  7    FLGQLWKEYALSDSR-YMTSDTLVLCLETMTVLIWGPLCFFVAYLILDQ----HSLRHPL  61
            FL QLWKEY L+D+     +    +  E +     GPL F  AY +L        LR+ L
Sbjct  1    FLAQLWKEY-LADTSDPFVAGPPFVSFELLEAFFQGPLFFLAAYALLKSPWRLLLLRYAL  59

Query  62   QLIVCMSHLYGDTLYYATSLYDHYVHGRSYCRPEAYYFWIYYFLMNFIWIVIPFYYLSQS  121
            Q        YGD LY+AT   +    G S  RP    FW+Y   +N  W+VIP   L  S
Sbjct  60   QTATTTLQCYGDVLYFATEWLE---GGLSLSRP----FWVYLVFLNLPWLVIPLLLLVDS  112



Lambda      K        H        a         alpha
   0.329    0.139    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00002603

Length=229
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461600 pfam05241, EBP, Emopamil binding protein. Emopamil bin...  88.7    2e-23


>CDD:461600 pfam05241, EBP, Emopamil binding protein.  Emopamil binding protein 
(EBP) is as a gene that encodes a non-glycosylated type 
I integral membrane protein of endoplasmic reticulum and 
shows high level expression in epithelial tissues. The EBP protein 
has emopamil binding domains, including the sterol acceptor 
site and the catalytic centre, which show Delta8-Delta7 
sterol isomerase activity. Human sterol isomerase, a homolog 
of mouse EBP, is suggested not only to play a role in cholesterol 
biosynthesis, but also to affect lipoprotein internalisation. 
In humans, mutations of EBP are known to cause the 
genetic disorder of X-linked dominant chondrodysplasia punctata 
(CDPX2). This syndrome of humans is lethal in most males, 
and affected females display asymmetric hyperkeratotic 
skin and skeletal abnormalities.
Length=112

 Score = 88.7 bits (221),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 43/120 (36%), Positives = 55/120 (46%), Gaps = 13/120 (11%)

Query  94   FLGQLWKEYALSDSR-YMTSDTLVLCLETMTVLIWGPLCFFVAYLILDQ----HSLRHPL  148
            FL QLWKEY L+D+     +    +  E +     GPL F  AY +L        LR+ L
Sbjct  1    FLAQLWKEY-LADTSDPFVAGPPFVSFELLEAFFQGPLFFLAAYALLKSPWRLLLLRYAL  59

Query  149  QLIVCMSHLYGDTLYYATSLYDHYVHGRSYCRPEAYYFWIYYFLMNFIWIVIPFYYLSQS  208
            Q        YGD LY+AT   +    G S  RP    FW+Y   +N  W+VIP   L  S
Sbjct  60   QTATTTLQCYGDVLYFATEWLE---GGLSLSRP----FWVYLVFLNLPWLVIPLLLLVDS  112



Lambda      K        H        a         alpha
   0.329    0.139    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00002604

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461600 pfam05241, EBP, Emopamil binding protein. Emopamil bin...  89.1    5e-24


>CDD:461600 pfam05241, EBP, Emopamil binding protein.  Emopamil binding protein 
(EBP) is as a gene that encodes a non-glycosylated type 
I integral membrane protein of endoplasmic reticulum and 
shows high level expression in epithelial tissues. The EBP protein 
has emopamil binding domains, including the sterol acceptor 
site and the catalytic centre, which show Delta8-Delta7 
sterol isomerase activity. Human sterol isomerase, a homolog 
of mouse EBP, is suggested not only to play a role in cholesterol 
biosynthesis, but also to affect lipoprotein internalisation. 
In humans, mutations of EBP are known to cause the 
genetic disorder of X-linked dominant chondrodysplasia punctata 
(CDPX2). This syndrome of humans is lethal in most males, 
and affected females display asymmetric hyperkeratotic 
skin and skeletal abnormalities.
Length=112

 Score = 89.1 bits (222),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 41/114 (36%), Positives = 53/114 (46%), Gaps = 13/114 (11%)

Query  7    FLGQLWKEYALSDSR-YMTSDTLVLCLETMTVLIWGPLCFFVAYLILDQ----HSLRHPL  61
            FL QLWKEY L+D+     +    +  E +     GPL F  AY +L        LR+ L
Sbjct  1    FLAQLWKEY-LADTSDPFVAGPPFVSFELLEAFFQGPLFFLAAYALLKSPWRLLLLRYAL  59

Query  62   QLIVCMSHLYGDTLYYATSLYDHYVHGRSYCRPEAYYFWIYYFLMNFIWIVIPF  115
            Q        YGD LY+AT   +    G S  RP    FW+Y   +N  W+VIP 
Sbjct  60   QTATTTLQCYGDVLYFATEWLE---GGLSLSRP----FWVYLVFLNLPWLVIPL  106



Lambda      K        H        a         alpha
   0.331    0.141    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00002606

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461600 pfam05241, EBP, Emopamil binding protein. Emopamil bin...  85.7    3e-23


>CDD:461600 pfam05241, EBP, Emopamil binding protein.  Emopamil binding protein 
(EBP) is as a gene that encodes a non-glycosylated type 
I integral membrane protein of endoplasmic reticulum and 
shows high level expression in epithelial tissues. The EBP protein 
has emopamil binding domains, including the sterol acceptor 
site and the catalytic centre, which show Delta8-Delta7 
sterol isomerase activity. Human sterol isomerase, a homolog 
of mouse EBP, is suggested not only to play a role in cholesterol 
biosynthesis, but also to affect lipoprotein internalisation. 
In humans, mutations of EBP are known to cause the 
genetic disorder of X-linked dominant chondrodysplasia punctata 
(CDPX2). This syndrome of humans is lethal in most males, 
and affected females display asymmetric hyperkeratotic 
skin and skeletal abnormalities.
Length=112

 Score = 85.7 bits (213),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 43/120 (36%), Positives = 55/120 (46%), Gaps = 13/120 (11%)

Query  7    FLGQLWKEYALSDSR-YMTSDTLVLCLETMTVLIWGPLCFFVAYLILDQ----HSLRHPL  61
            FL QLWKEY L+D+     +    +  E +     GPL F  AY +L        LR+ L
Sbjct  1    FLAQLWKEY-LADTSDPFVAGPPFVSFELLEAFFQGPLFFLAAYALLKSPWRLLLLRYAL  59

Query  62   QLIVCMSHLYGDTLYYATSLYDHYVHGRSYCRPEAYYFWIYYFLMNFIWIVIPFYYLSQS  121
            Q        YGD LY+AT   +    G S  RP    FW+Y   +N  W+VIP   L  S
Sbjct  60   QTATTTLQCYGDVLYFATEWLE---GGLSLSRP----FWVYLVFLNLPWLVIPLLLLVDS  112



Lambda      K        H        a         alpha
   0.329    0.139    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00002605

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461600 pfam05241, EBP, Emopamil binding protein. Emopamil bin...  90.3    2e-23


>CDD:461600 pfam05241, EBP, Emopamil binding protein.  Emopamil binding protein 
(EBP) is as a gene that encodes a non-glycosylated type 
I integral membrane protein of endoplasmic reticulum and 
shows high level expression in epithelial tissues. The EBP protein 
has emopamil binding domains, including the sterol acceptor 
site and the catalytic centre, which show Delta8-Delta7 
sterol isomerase activity. Human sterol isomerase, a homolog 
of mouse EBP, is suggested not only to play a role in cholesterol 
biosynthesis, but also to affect lipoprotein internalisation. 
In humans, mutations of EBP are known to cause the 
genetic disorder of X-linked dominant chondrodysplasia punctata 
(CDPX2). This syndrome of humans is lethal in most males, 
and affected females display asymmetric hyperkeratotic 
skin and skeletal abnormalities.
Length=112

 Score = 90.3 bits (225),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 41/114 (36%), Positives = 53/114 (46%), Gaps = 13/114 (11%)

Query  94   FLGQLWKEYALSDSR-YMTSDTLVLCLETMTVLIWGPLCFFVAYLILDQ----HSLRHPL  148
            FL QLWKEY L+D+     +    +  E +     GPL F  AY +L        LR+ L
Sbjct  1    FLAQLWKEY-LADTSDPFVAGPPFVSFELLEAFFQGPLFFLAAYALLKSPWRLLLLRYAL  59

Query  149  QLIVCMSHLYGDTLYYATSLYDHYVHGRSYCRPEAYYFWIYYFLMNFIWIVIPF  202
            Q        YGD LY+AT   +    G S  RP    FW+Y   +N  W+VIP 
Sbjct  60   QTATTTLQCYGDVLYFATEWLE---GGLSLSRP----FWVYLVFLNLPWLVIPL  106



Lambda      K        H        a         alpha
   0.330    0.141    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00002607

Length=844
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  264     2e-82
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  79.6    2e-18


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 264 bits (676),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 107/310 (35%), Positives = 158/310 (51%), Gaps = 31/310 (10%)

Query  164  HQREGVQFLYECVMGMRSFNGEGAILADDMGLGKTLQTITLLWTLLKQNPIHESPPVIKK  223
            +Q EGV ++      +    G G ILAD+MGLGKTLQTI+LL  L   +     P     
Sbjct  1    YQIEGVNWMLSLENNL----GRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGP-----  51

Query  224  ALIVCPVTLINNWRKEFRKWLGNERIGVFV-FDDKRKR---LTDFTMGRAYSVMIVGYEK  279
             LIV P++L++NW  EF +W+    + V V   +KR +     D      + V+I  YE 
Sbjct  52   TLIVVPLSLLHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYET  111

Query  280  LRTVQEGLARGAGVDIIIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFF  339
            LR  +E L +     I++ DEGHRLK  ++K  +A++SL    R IL+GTP+QN+L+E +
Sbjct  112  LRKHKELLKKVHWHRIVL-DEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQNNLEELW  170

Query  340  AAVDLVNPGILGNFKAFVREFEGPIVKSRQPEATKKEIEKGEARNEELRELTSKFMLRRT  399
            A ++ + PG  G+   F   F+ PI           E   G+     L +L   F+LRRT
Sbjct  171  ALLNFLRPGPFGSLSTFRNWFDRPI-----------ERGGGKKGVSRLHKLLKPFLLRRT  219

Query  400  VDILAKYLPPKTEYVLFCNPTSTQATIYKNVLASP-VFQCAIGNSENA-----LQLITIL  453
               + K LPPK EY+LFC  +  Q  +Y+  L    +     G          L ++  L
Sbjct  220  KKDVEKSLPPKVEYILFCRLSKLQRKLYQTFLLKKDLNAIKTGEGGREIKASLLNILMRL  279

Query  454  KKLCNSPSLL  463
            +K+CN P L+
Sbjct  280  RKICNHPGLI  289


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 79.6 bits (197),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 29/117 (25%), Positives = 50/117 (43%), Gaps = 8/117 (7%)

Query  497  AKIRVLDQLLHNLRTSTSEKIVLVSNYTSTLNLLANLLNSLSLPFLRLDGSTPAQKRQAL  556
             K+  L +LL   +     K+++ S    TL     L         RL G    ++R+ +
Sbjct  1    EKLEALLELL---KKERGGKVLIFSQTKKTLEAELLLEKEGI-KVARLHGDLSQEEREEI  56

Query  557  VEDFNRLPPNRCFAFLLSAKAGGTGLNLIGASRLVLFDVDWNPATDVQAMARIHRDG  613
            +EDF           L++      GL+L     ++ +D+ WNPA+ +Q + R  R G
Sbjct  57   LEDFR----KGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1075199986


Query= TCONS_00007851

Length=844
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  264     2e-82
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  79.6    2e-18


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 264 bits (676),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 107/310 (35%), Positives = 158/310 (51%), Gaps = 31/310 (10%)

Query  164  HQREGVQFLYECVMGMRSFNGEGAILADDMGLGKTLQTITLLWTLLKQNPIHESPPVIKK  223
            +Q EGV ++      +    G G ILAD+MGLGKTLQTI+LL  L   +     P     
Sbjct  1    YQIEGVNWMLSLENNL----GRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGP-----  51

Query  224  ALIVCPVTLINNWRKEFRKWLGNERIGVFV-FDDKRKR---LTDFTMGRAYSVMIVGYEK  279
             LIV P++L++NW  EF +W+    + V V   +KR +     D      + V+I  YE 
Sbjct  52   TLIVVPLSLLHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYET  111

Query  280  LRTVQEGLARGAGVDIIIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFF  339
            LR  +E L +     I++ DEGHRLK  ++K  +A++SL    R IL+GTP+QN+L+E +
Sbjct  112  LRKHKELLKKVHWHRIVL-DEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQNNLEELW  170

Query  340  AAVDLVNPGILGNFKAFVREFEGPIVKSRQPEATKKEIEKGEARNEELRELTSKFMLRRT  399
            A ++ + PG  G+   F   F+ PI           E   G+     L +L   F+LRRT
Sbjct  171  ALLNFLRPGPFGSLSTFRNWFDRPI-----------ERGGGKKGVSRLHKLLKPFLLRRT  219

Query  400  VDILAKYLPPKTEYVLFCNPTSTQATIYKNVLASP-VFQCAIGNSENA-----LQLITIL  453
               + K LPPK EY+LFC  +  Q  +Y+  L    +     G          L ++  L
Sbjct  220  KKDVEKSLPPKVEYILFCRLSKLQRKLYQTFLLKKDLNAIKTGEGGREIKASLLNILMRL  279

Query  454  KKLCNSPSLL  463
            +K+CN P L+
Sbjct  280  RKICNHPGLI  289


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 79.6 bits (197),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 29/117 (25%), Positives = 50/117 (43%), Gaps = 8/117 (7%)

Query  497  AKIRVLDQLLHNLRTSTSEKIVLVSNYTSTLNLLANLLNSLSLPFLRLDGSTPAQKRQAL  556
             K+  L +LL   +     K+++ S    TL     L         RL G    ++R+ +
Sbjct  1    EKLEALLELL---KKERGGKVLIFSQTKKTLEAELLLEKEGI-KVARLHGDLSQEEREEI  56

Query  557  VEDFNRLPPNRCFAFLLSAKAGGTGLNLIGASRLVLFDVDWNPATDVQAMARIHRDG  613
            +EDF           L++      GL+L     ++ +D+ WNPA+ +Q + R  R G
Sbjct  57   LEDFR----KGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1075199986


Query= TCONS_00007852

Length=1713


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2157103612


Query= TCONS_00002608

Length=844
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  264     2e-82
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  79.6    2e-18


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 264 bits (676),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 107/310 (35%), Positives = 158/310 (51%), Gaps = 31/310 (10%)

Query  164  HQREGVQFLYECVMGMRSFNGEGAILADDMGLGKTLQTITLLWTLLKQNPIHESPPVIKK  223
            +Q EGV ++      +    G G ILAD+MGLGKTLQTI+LL  L   +     P     
Sbjct  1    YQIEGVNWMLSLENNL----GRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGP-----  51

Query  224  ALIVCPVTLINNWRKEFRKWLGNERIGVFV-FDDKRKR---LTDFTMGRAYSVMIVGYEK  279
             LIV P++L++NW  EF +W+    + V V   +KR +     D      + V+I  YE 
Sbjct  52   TLIVVPLSLLHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYET  111

Query  280  LRTVQEGLARGAGVDIIIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFF  339
            LR  +E L +     I++ DEGHRLK  ++K  +A++SL    R IL+GTP+QN+L+E +
Sbjct  112  LRKHKELLKKVHWHRIVL-DEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQNNLEELW  170

Query  340  AAVDLVNPGILGNFKAFVREFEGPIVKSRQPEATKKEIEKGEARNEELRELTSKFMLRRT  399
            A ++ + PG  G+   F   F+ PI           E   G+     L +L   F+LRRT
Sbjct  171  ALLNFLRPGPFGSLSTFRNWFDRPI-----------ERGGGKKGVSRLHKLLKPFLLRRT  219

Query  400  VDILAKYLPPKTEYVLFCNPTSTQATIYKNVLASP-VFQCAIGNSENA-----LQLITIL  453
               + K LPPK EY+LFC  +  Q  +Y+  L    +     G          L ++  L
Sbjct  220  KKDVEKSLPPKVEYILFCRLSKLQRKLYQTFLLKKDLNAIKTGEGGREIKASLLNILMRL  279

Query  454  KKLCNSPSLL  463
            +K+CN P L+
Sbjct  280  RKICNHPGLI  289


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 79.6 bits (197),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 29/117 (25%), Positives = 50/117 (43%), Gaps = 8/117 (7%)

Query  497  AKIRVLDQLLHNLRTSTSEKIVLVSNYTSTLNLLANLLNSLSLPFLRLDGSTPAQKRQAL  556
             K+  L +LL   +     K+++ S    TL     L         RL G    ++R+ +
Sbjct  1    EKLEALLELL---KKERGGKVLIFSQTKKTLEAELLLEKEGI-KVARLHGDLSQEEREEI  56

Query  557  VEDFNRLPPNRCFAFLLSAKAGGTGLNLIGASRLVLFDVDWNPATDVQAMARIHRDG  613
            +EDF           L++      GL+L     ++ +D+ WNPA+ +Q + R  R G
Sbjct  57   LEDFR----KGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1075199986


Query= TCONS_00002609

Length=844
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  264     2e-82
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  79.6    2e-18


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 264 bits (676),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 107/310 (35%), Positives = 158/310 (51%), Gaps = 31/310 (10%)

Query  164  HQREGVQFLYECVMGMRSFNGEGAILADDMGLGKTLQTITLLWTLLKQNPIHESPPVIKK  223
            +Q EGV ++      +    G G ILAD+MGLGKTLQTI+LL  L   +     P     
Sbjct  1    YQIEGVNWMLSLENNL----GRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGP-----  51

Query  224  ALIVCPVTLINNWRKEFRKWLGNERIGVFV-FDDKRKR---LTDFTMGRAYSVMIVGYEK  279
             LIV P++L++NW  EF +W+    + V V   +KR +     D      + V+I  YE 
Sbjct  52   TLIVVPLSLLHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYET  111

Query  280  LRTVQEGLARGAGVDIIIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFF  339
            LR  +E L +     I++ DEGHRLK  ++K  +A++SL    R IL+GTP+QN+L+E +
Sbjct  112  LRKHKELLKKVHWHRIVL-DEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQNNLEELW  170

Query  340  AAVDLVNPGILGNFKAFVREFEGPIVKSRQPEATKKEIEKGEARNEELRELTSKFMLRRT  399
            A ++ + PG  G+   F   F+ PI           E   G+     L +L   F+LRRT
Sbjct  171  ALLNFLRPGPFGSLSTFRNWFDRPI-----------ERGGGKKGVSRLHKLLKPFLLRRT  219

Query  400  VDILAKYLPPKTEYVLFCNPTSTQATIYKNVLASP-VFQCAIGNSENA-----LQLITIL  453
               + K LPPK EY+LFC  +  Q  +Y+  L    +     G          L ++  L
Sbjct  220  KKDVEKSLPPKVEYILFCRLSKLQRKLYQTFLLKKDLNAIKTGEGGREIKASLLNILMRL  279

Query  454  KKLCNSPSLL  463
            +K+CN P L+
Sbjct  280  RKICNHPGLI  289


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 79.6 bits (197),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 29/117 (25%), Positives = 50/117 (43%), Gaps = 8/117 (7%)

Query  497  AKIRVLDQLLHNLRTSTSEKIVLVSNYTSTLNLLANLLNSLSLPFLRLDGSTPAQKRQAL  556
             K+  L +LL   +     K+++ S    TL     L         RL G    ++R+ +
Sbjct  1    EKLEALLELL---KKERGGKVLIFSQTKKTLEAELLLEKEGI-KVARLHGDLSQEEREEI  56

Query  557  VEDFNRLPPNRCFAFLLSAKAGGTGLNLIGASRLVLFDVDWNPATDVQAMARIHRDG  613
            +EDF           L++      GL+L     ++ +D+ WNPA+ +Q + R  R G
Sbjct  57   LEDFR----KGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1075199986


Query= TCONS_00002610

Length=844
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  264     2e-82
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  79.6    2e-18


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 264 bits (676),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 107/310 (35%), Positives = 158/310 (51%), Gaps = 31/310 (10%)

Query  164  HQREGVQFLYECVMGMRSFNGEGAILADDMGLGKTLQTITLLWTLLKQNPIHESPPVIKK  223
            +Q EGV ++      +    G G ILAD+MGLGKTLQTI+LL  L   +     P     
Sbjct  1    YQIEGVNWMLSLENNL----GRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGP-----  51

Query  224  ALIVCPVTLINNWRKEFRKWLGNERIGVFV-FDDKRKR---LTDFTMGRAYSVMIVGYEK  279
             LIV P++L++NW  EF +W+    + V V   +KR +     D      + V+I  YE 
Sbjct  52   TLIVVPLSLLHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYET  111

Query  280  LRTVQEGLARGAGVDIIIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFF  339
            LR  +E L +     I++ DEGHRLK  ++K  +A++SL    R IL+GTP+QN+L+E +
Sbjct  112  LRKHKELLKKVHWHRIVL-DEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQNNLEELW  170

Query  340  AAVDLVNPGILGNFKAFVREFEGPIVKSRQPEATKKEIEKGEARNEELRELTSKFMLRRT  399
            A ++ + PG  G+   F   F+ PI           E   G+     L +L   F+LRRT
Sbjct  171  ALLNFLRPGPFGSLSTFRNWFDRPI-----------ERGGGKKGVSRLHKLLKPFLLRRT  219

Query  400  VDILAKYLPPKTEYVLFCNPTSTQATIYKNVLASP-VFQCAIGNSENA-----LQLITIL  453
               + K LPPK EY+LFC  +  Q  +Y+  L    +     G          L ++  L
Sbjct  220  KKDVEKSLPPKVEYILFCRLSKLQRKLYQTFLLKKDLNAIKTGEGGREIKASLLNILMRL  279

Query  454  KKLCNSPSLL  463
            +K+CN P L+
Sbjct  280  RKICNHPGLI  289


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 79.6 bits (197),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 29/117 (25%), Positives = 50/117 (43%), Gaps = 8/117 (7%)

Query  497  AKIRVLDQLLHNLRTSTSEKIVLVSNYTSTLNLLANLLNSLSLPFLRLDGSTPAQKRQAL  556
             K+  L +LL   +     K+++ S    TL     L         RL G    ++R+ +
Sbjct  1    EKLEALLELL---KKERGGKVLIFSQTKKTLEAELLLEKEGI-KVARLHGDLSQEEREEI  56

Query  557  VEDFNRLPPNRCFAFLLSAKAGGTGLNLIGASRLVLFDVDWNPATDVQAMARIHRDG  613
            +EDF           L++      GL+L     ++ +D+ WNPA+ +Q + R  R G
Sbjct  57   LEDFR----KGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 1075199986


Query= TCONS_00002611

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00002612

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00007853

Length=549


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00007854

Length=533


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00007855

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00002613

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00007856

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00007857

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00002614

Length=454


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 558268256


Query= TCONS_00002615

Length=347


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00002616

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00007859

Length=533


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00002617

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00002618

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00007860

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00007862

Length=333


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00007861

Length=391


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00002619

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00002620

Length=369


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00007863

Length=490


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00002622

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00002623

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0584    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00007864

Length=549


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00002624

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00002625

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00007865

Length=353


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00007866

Length=498


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00007867

Length=506


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00007868

Length=353


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00002626

Length=365


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00007869

Length=498


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00007870

Length=369


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00002627

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00007871

Length=498


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00007872

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00002628

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily. This...  185     9e-57
CDD:396894 pfam02551, Acyl_CoA_thio, Acyl-CoA thioesterase. This ...  61.9    3e-12


>CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=246

 Score = 185 bits (471),  Expect = 9e-57, Method: Composition-based stats.
 Identities = 92/317 (29%), Positives = 115/317 (36%), Gaps = 81/317 (26%)

Query  40   TRPLWHPPGARGIFGGAAIAQSLSAAMRTVPTDFAVHSMHCYFVLAGDSEIPILYHVERV  99
            T P W P  A    GG   A  L AA RTVP D  +HS+H  F+       P+   VE V
Sbjct  1    TPPPWSPGRA--PHGGYVAALLLRAAERTVPPD-PLHSLHVDFLRPVPPG-PVTIRVEVV  56

Query  100  RDGRSFITRTVQARQRGRPIFTTTLSFSRANSGGKKRLEHATPKPSLAD--PAEGTRGSL  157
            RDGRSF TR V+  Q GR + T T +F R  S   +    A P     +  P        
Sbjct  57   RDGRSFSTRRVELSQDGRVVVTATATFGRLRSSEWELTPAAPPPLPPPEDCPLAADEAPF  116

Query  158  EDSRG------PFETHRAGTVNRDSPNPEDKRVRRFARARGRISEAGGHQAHLSALAYIT  211
               R       PFE   A      SP     RVR + R R      GG    L+ALAY+ 
Sbjct  117  PLFRRVPGFLDPFEPRFARGGGPFSPGGP-GRVRLWVRLR-----DGGEPDPLAALAYLA  170

Query  212  DSYFIGTVARVQNIPRFSSPAELRRALQALKNPSDLDDEDIARAIKELKEEEAADLRRRL  271
            D+              F       R                                   
Sbjct  171  DA--------------FPPRVLSLR-----------------------------------  181

Query  272  EGALSQATNQPKEDRKEVGMMVSLDHSIYFHNPWAFRADEWMLMEMESPWAGEGRGLAIQ  331
                         D    G   +LD ++YFH        EW+L+  E+P AG+GRG    
Sbjct  182  ------------LDPPASGWFPTLDLTVYFHR--RPPPGEWLLLRAETPVAGDGRGDVEA  227

Query  332  KIWSRDGTLIATCTQEV  348
            ++W  DG L+AT  QEV
Sbjct  228  RLWDEDGRLVATSRQEV  244


>CDD:396894 pfam02551, Acyl_CoA_thio, Acyl-CoA thioesterase.  This family 
represents the thioesterase II domain. Two copies of this domain 
are found in a number of acyl-CoA thioesterases.
Length=132

 Score = 61.9 bits (150),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 3/59 (5%)

Query  290  GMMVSLDHSIYFHNPWAFRADEWMLMEMESPWAGEGRGLAIQKIWS-RDGTLIATCTQE  347
            G+ VSLDHSIYFH P     ++W+L ++ESP A  GRGL   + +S + G LIA+  QE
Sbjct  74   GIQVSLDHSIYFHRP--GDLNKWILYDVESPSASGGRGLRQGRNFSTQSGKLIASVQQE  130



Lambda      K        H        a         alpha
   0.322    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 507942834


Query= TCONS_00007873

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00002629

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00002631

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily. This...  188     8e-59
CDD:396894 pfam02551, Acyl_CoA_thio, Acyl-CoA thioesterase. This ...  65.3    1e-13


>CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=246

 Score = 188 bits (480),  Expect = 8e-59, Method: Composition-based stats.
 Identities = 92/319 (29%), Positives = 116/319 (36%), Gaps = 81/319 (25%)

Query  40   TRPLWHPPGARGIFGGAAIAQSLSAAMRTVPTDFAVHSMHCYFVLAGDSEIPILYHVERV  99
            T P W P  A    GG   A  L AA RTVP D  +HS+H  F+       P+   VE V
Sbjct  1    TPPPWSPGRA--PHGGYVAALLLRAAERTVPPD-PLHSLHVDFLRPVPPG-PVTIRVEVV  56

Query  100  RDGRSFITRTVQARQRGRPIFTTTLSFSRANSGGKKRLEHATPKPSLAD--PAEGTRGSL  157
            RDGRSF TR V+  Q GR + T T +F R  S   +    A P     +  P        
Sbjct  57   RDGRSFSTRRVELSQDGRVVVTATATFGRLRSSEWELTPAAPPPLPPPEDCPLAADEAPF  116

Query  158  EDSRG------PFETHRAGTVNRDSPNPEDKRVRRFARARGRISEAGGHQAHLSALAYIT  211
               R       PFE   A      SP     RVR + R R      GG    L+ALAY+ 
Sbjct  117  PLFRRVPGFLDPFEPRFARGGGPFSPGGP-GRVRLWVRLR-----DGGEPDPLAALAYLA  170

Query  212  DSYFIGTVARVQNIPRFSSPAELRRALQALKNPSDLDDEDIARAIKELKEEEAADLRRRL  271
            D+              F       R                                   
Sbjct  171  DA--------------FPPRVLSLR-----------------------------------  181

Query  272  EGALSQATNQPKEDRKEVGMMVSLDHSIYFHNPWAFRADEWMLMEMESPWAGEGRGLAIQ  331
                         D    G   +LD ++YFH        EW+L+  E+P AG+GRG    
Sbjct  182  ------------LDPPASGWFPTLDLTVYFHR--RPPPGEWLLLRAETPVAGDGRGDVEA  227

Query  332  KIWSRDGTLIATCTQEGVV  350
            ++W  DG L+AT  QE +V
Sbjct  228  RLWDEDGRLVATSRQEVLV  246


>CDD:396894 pfam02551, Acyl_CoA_thio, Acyl-CoA thioesterase.  This family 
represents the thioesterase II domain. Two copies of this domain 
are found in a number of acyl-CoA thioesterases.
Length=132

 Score = 65.3 bits (159),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 3/61 (5%)

Query  290  GMMVSLDHSIYFHNPWAFRADEWMLMEMESPWAGEGRGLAIQKIWS-RDGTLIATCTQEG  348
            G+ VSLDHSIYFH P     ++W+L ++ESP A  GRGL   + +S + G LIA+  QEG
Sbjct  74   GIQVSLDHSIYFHRP--GDLNKWILYDVESPSASGGRGLRQGRNFSTQSGKLIASVQQEG  131

Query  349  V  349
            +
Sbjct  132  L  132



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00002630

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily. This...  188     8e-59
CDD:396894 pfam02551, Acyl_CoA_thio, Acyl-CoA thioesterase. This ...  65.3    1e-13


>CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=246

 Score = 188 bits (480),  Expect = 8e-59, Method: Composition-based stats.
 Identities = 92/319 (29%), Positives = 116/319 (36%), Gaps = 81/319 (25%)

Query  40   TRPLWHPPGARGIFGGAAIAQSLSAAMRTVPTDFAVHSMHCYFVLAGDSEIPILYHVERV  99
            T P W P  A    GG   A  L AA RTVP D  +HS+H  F+       P+   VE V
Sbjct  1    TPPPWSPGRA--PHGGYVAALLLRAAERTVPPD-PLHSLHVDFLRPVPPG-PVTIRVEVV  56

Query  100  RDGRSFITRTVQARQRGRPIFTTTLSFSRANSGGKKRLEHATPKPSLAD--PAEGTRGSL  157
            RDGRSF TR V+  Q GR + T T +F R  S   +    A P     +  P        
Sbjct  57   RDGRSFSTRRVELSQDGRVVVTATATFGRLRSSEWELTPAAPPPLPPPEDCPLAADEAPF  116

Query  158  EDSRG------PFETHRAGTVNRDSPNPEDKRVRRFARARGRISEAGGHQAHLSALAYIT  211
               R       PFE   A      SP     RVR + R R      GG    L+ALAY+ 
Sbjct  117  PLFRRVPGFLDPFEPRFARGGGPFSPGGP-GRVRLWVRLR-----DGGEPDPLAALAYLA  170

Query  212  DSYFIGTVARVQNIPRFSSPAELRRALQALKNPSDLDDEDIARAIKELKEEEAADLRRRL  271
            D+              F       R                                   
Sbjct  171  DA--------------FPPRVLSLR-----------------------------------  181

Query  272  EGALSQATNQPKEDRKEVGMMVSLDHSIYFHNPWAFRADEWMLMEMESPWAGEGRGLAIQ  331
                         D    G   +LD ++YFH        EW+L+  E+P AG+GRG    
Sbjct  182  ------------LDPPASGWFPTLDLTVYFHR--RPPPGEWLLLRAETPVAGDGRGDVEA  227

Query  332  KIWSRDGTLIATCTQEGVV  350
            ++W  DG L+AT  QE +V
Sbjct  228  RLWDEDGRLVATSRQEVLV  246


>CDD:396894 pfam02551, Acyl_CoA_thio, Acyl-CoA thioesterase.  This family 
represents the thioesterase II domain. Two copies of this domain 
are found in a number of acyl-CoA thioesterases.
Length=132

 Score = 65.3 bits (159),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 3/61 (5%)

Query  290  GMMVSLDHSIYFHNPWAFRADEWMLMEMESPWAGEGRGLAIQKIWS-RDGTLIATCTQEG  348
            G+ VSLDHSIYFH P     ++W+L ++ESP A  GRGL   + +S + G LIA+  QEG
Sbjct  74   GIQVSLDHSIYFHRP--GDLNKWILYDVESPSASGGRGLRQGRNFSTQSGKLIASVQQEG  131

Query  349  V  349
            +
Sbjct  132  L  132



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00007874

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily. This...  185     9e-57
CDD:396894 pfam02551, Acyl_CoA_thio, Acyl-CoA thioesterase. This ...  61.9    3e-12


>CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=246

 Score = 185 bits (471),  Expect = 9e-57, Method: Composition-based stats.
 Identities = 92/317 (29%), Positives = 115/317 (36%), Gaps = 81/317 (26%)

Query  40   TRPLWHPPGARGIFGGAAIAQSLSAAMRTVPTDFAVHSMHCYFVLAGDSEIPILYHVERV  99
            T P W P  A    GG   A  L AA RTVP D  +HS+H  F+       P+   VE V
Sbjct  1    TPPPWSPGRA--PHGGYVAALLLRAAERTVPPD-PLHSLHVDFLRPVPPG-PVTIRVEVV  56

Query  100  RDGRSFITRTVQARQRGRPIFTTTLSFSRANSGGKKRLEHATPKPSLAD--PAEGTRGSL  157
            RDGRSF TR V+  Q GR + T T +F R  S   +    A P     +  P        
Sbjct  57   RDGRSFSTRRVELSQDGRVVVTATATFGRLRSSEWELTPAAPPPLPPPEDCPLAADEAPF  116

Query  158  EDSRG------PFETHRAGTVNRDSPNPEDKRVRRFARARGRISEAGGHQAHLSALAYIT  211
               R       PFE   A      SP     RVR + R R      GG    L+ALAY+ 
Sbjct  117  PLFRRVPGFLDPFEPRFARGGGPFSPGGP-GRVRLWVRLR-----DGGEPDPLAALAYLA  170

Query  212  DSYFIGTVARVQNIPRFSSPAELRRALQALKNPSDLDDEDIARAIKELKEEEAADLRRRL  271
            D+              F       R                                   
Sbjct  171  DA--------------FPPRVLSLR-----------------------------------  181

Query  272  EGALSQATNQPKEDRKEVGMMVSLDHSIYFHNPWAFRADEWMLMEMESPWAGEGRGLAIQ  331
                         D    G   +LD ++YFH        EW+L+  E+P AG+GRG    
Sbjct  182  ------------LDPPASGWFPTLDLTVYFHR--RPPPGEWLLLRAETPVAGDGRGDVEA  227

Query  332  KIWSRDGTLIATCTQEV  348
            ++W  DG L+AT  QEV
Sbjct  228  RLWDEDGRLVATSRQEV  244


>CDD:396894 pfam02551, Acyl_CoA_thio, Acyl-CoA thioesterase.  This family 
represents the thioesterase II domain. Two copies of this domain 
are found in a number of acyl-CoA thioesterases.
Length=132

 Score = 61.9 bits (150),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 3/59 (5%)

Query  290  GMMVSLDHSIYFHNPWAFRADEWMLMEMESPWAGEGRGLAIQKIWS-RDGTLIATCTQE  347
            G+ VSLDHSIYFH P     ++W+L ++ESP A  GRGL   + +S + G LIA+  QE
Sbjct  74   GIQVSLDHSIYFHRP--GDLNKWILYDVESPSASGGRGLRQGRNFSTQSGKLIASVQQE  130



Lambda      K        H        a         alpha
   0.322    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 507942834


Query= TCONS_00002633

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00002634

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily. This...  188     1e-58
CDD:396894 pfam02551, Acyl_CoA_thio, Acyl-CoA thioesterase. This ...  65.7    1e-13


>CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=246

 Score = 188 bits (480),  Expect = 1e-58, Method: Composition-based stats.
 Identities = 92/319 (29%), Positives = 116/319 (36%), Gaps = 81/319 (25%)

Query  40   TRPLWHPPGARGIFGGAAIAQSLSAAMRTVPTDFAVHSMHCYFVLAGDSEIPILYHVERV  99
            T P W P  A    GG   A  L AA RTVP D  +HS+H  F+       P+   VE V
Sbjct  1    TPPPWSPGRA--PHGGYVAALLLRAAERTVPPD-PLHSLHVDFLRPVPPG-PVTIRVEVV  56

Query  100  RDGRSFITRTVQARQRGRPIFTTTLSFSRANSGGKKRLEHATPKPSLAD--PAEGTRGSL  157
            RDGRSF TR V+  Q GR + T T +F R  S   +    A P     +  P        
Sbjct  57   RDGRSFSTRRVELSQDGRVVVTATATFGRLRSSEWELTPAAPPPLPPPEDCPLAADEAPF  116

Query  158  EDSRG------PFETHRAGTVNRDSPNPEDKRVRRFARARGRISEAGGHQAHLSALAYIT  211
               R       PFE   A      SP     RVR + R R      GG    L+ALAY+ 
Sbjct  117  PLFRRVPGFLDPFEPRFARGGGPFSPGGP-GRVRLWVRLR-----DGGEPDPLAALAYLA  170

Query  212  DSYFIGTVARVQNIPRFSSPAELRRALQALKNPSDLDDEDIARAIKELKEEEAADLRRRL  271
            D+              F       R                                   
Sbjct  171  DA--------------FPPRVLSLR-----------------------------------  181

Query  272  EGALSQATNQPKEDRKEVGMMVSLDHSIYFHNPWAFRADEWMLMEMESPWAGEGRGLAIQ  331
                         D    G   +LD ++YFH        EW+L+  E+P AG+GRG    
Sbjct  182  ------------LDPPASGWFPTLDLTVYFHR--RPPPGEWLLLRAETPVAGDGRGDVEA  227

Query  332  KIWSRDGTLIATCTQEGVV  350
            ++W  DG L+AT  QE +V
Sbjct  228  RLWDEDGRLVATSRQEVLV  246


>CDD:396894 pfam02551, Acyl_CoA_thio, Acyl-CoA thioesterase.  This family 
represents the thioesterase II domain. Two copies of this domain 
are found in a number of acyl-CoA thioesterases.
Length=132

 Score = 65.7 bits (160),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 3/61 (5%)

Query  290  GMMVSLDHSIYFHNPWAFRADEWMLMEMESPWAGEGRGLAIQKIWS-RDGTLIATCTQEG  348
            G+ VSLDHSIYFH P     ++W+L ++ESP A  GRGL   + +S + G LIA+  QEG
Sbjct  74   GIQVSLDHSIYFHRP--GDLNKWILYDVESPSASGGRGLRQGRNFSTQSGKLIASVQQEG  131

Query  349  V  349
            +
Sbjct  132  L  132



Lambda      K        H        a         alpha
   0.318    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00007877

Length=72
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily. This...  85.8    4e-23
CDD:396894 pfam02551, Acyl_CoA_thio, Acyl-CoA thioesterase. This ...  65.7    3e-16


>CDD:463937 pfam13622, 4HBT_3, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=246

 Score = 85.8 bits (213),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query  1    MMVSLDHSIYFHNPWAFRADEWMLMEMESPWAGEGRGLAIQKIWSRDGTLIATCTQEGVV  60
               +LD ++YFH        EW+L+  E+P AG+GRG    ++W  DG L+AT  QE +V
Sbjct  189  WFPTLDLTVYFHR--RPPPGEWLLLRAETPVAGDGRGDVEARLWDEDGRLVATSRQEVLV  246


>CDD:396894 pfam02551, Acyl_CoA_thio, Acyl-CoA thioesterase.  This family 
represents the thioesterase II domain. Two copies of this domain 
are found in a number of acyl-CoA thioesterases.
Length=132

 Score = 65.7 bits (160),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 40/60 (67%), Gaps = 3/60 (5%)

Query  1    MMVSLDHSIYFHNPWAFRADEWMLMEMESPWAGEGRGLAIQKIWS-RDGTLIATCTQEGV  59
            + VSLDHSIYFH P     ++W+L ++ESP A  GRGL   + +S + G LIA+  QEG+
Sbjct  75   IQVSLDHSIYFHRP--GDLNKWILYDVESPSASGGRGLRQGRNFSTQSGKLIASVQQEGL  132



Lambda      K        H        a         alpha
   0.322    0.134    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00007878

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00002635

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00002636

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00007879

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00002637

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00002638

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400340 pfam07942, N2227, N2227-like protein. This family feat...  329     2e-113


>CDD:400340 pfam07942, N2227, N2227-like protein.  This family features sequences 
that are similar to a region of hypothetical yeast 
gene product N2227. This is thought to be expressed during meiosis 
and may be involved in the defense response to stressful 
conditions.
Length=268

 Score = 329 bits (846),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 119/296 (40%), Positives = 168/296 (57%), Gaps = 28/296 (9%)

Query  71   QNWHGTATSSDVNKAHSTIRQFYRDWSAEGRAEREICYEPVLRDLRDEFDTRHSDRNEIR  130
             +     +  D++K  ST+RQ  RDWSAEG+ ER+  Y+P++ +L   F +   DR++IR
Sbjct  1    PHEPVNVSRGDMSKVRSTLRQIVRDWSAEGQVERDPLYKPIIEELNRLFPSEDDDRSKIR  60

Query  131  VLVPGAGLGRLVFEICQAGFAAEGNEISYHQLLASSWVLNHTRGPQQHALYPFALHFSNL  190
            +LVPGAGLGRL +E+   G+  +GNE SY  LL S+++LN+ +   Q  +YPF   FSN 
Sbjct  61   ILVPGAGLGRLAYELATLGYQVQGNEFSYFMLLCSNFILNYCKEENQITIYPFIHSFSNQ  120

Query  191  LSREQQLQKIMIPDKHPATVMMEAQAEDSSAFGTMSMSAADFVVLYNNPSNKEAFDAVAT  250
            L+R+ QL+ + IPD HP +        +    G  SM A DF+ +Y    +  ++D V T
Sbjct  121  LTRDDQLRPVQIPDVHPLS--------ELGPRGNFSMCAGDFLEVY--GEDANSYDVVVT  170

Query  251  VFFIDTAPNLIRYIETIRHCLKPNGLWINLGPLLWHFEDGSNKGHGSGSDHSQGIGEPGN  310
             FFIDTA N++ YI+TI   LKP G WINLGPLL+HFE   +                 +
Sbjct  171  CFFIDTAHNVLEYIDTIEKILKPGGHWINLGPLLYHFEPLPD---------------EMS  215

Query  311  VELTEEEVFCLVERMGFSIEKRLSAENRPLCGYIQDPESMLQNLYRPSHWVARKKT  366
            +EL+ E++  L  + GF  EK    E   L GY  + ESM+Q  Y    WVARK  
Sbjct  216  IELSLEDIKRLATKRGFKDEKE---ETGILNGYTTNYESMMQGYYGCVFWVARKPP  268



Lambda      K        H        a         alpha
   0.319    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00002639

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400340 pfam07942, N2227, N2227-like protein. This family feat...  329     2e-113


>CDD:400340 pfam07942, N2227, N2227-like protein.  This family features sequences 
that are similar to a region of hypothetical yeast 
gene product N2227. This is thought to be expressed during meiosis 
and may be involved in the defense response to stressful 
conditions.
Length=268

 Score = 329 bits (846),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 119/296 (40%), Positives = 168/296 (57%), Gaps = 28/296 (9%)

Query  71   QNWHGTATSSDVNKAHSTIRQFYRDWSAEGRAEREICYEPVLRDLRDEFDTRHSDRNEIR  130
             +     +  D++K  ST+RQ  RDWSAEG+ ER+  Y+P++ +L   F +   DR++IR
Sbjct  1    PHEPVNVSRGDMSKVRSTLRQIVRDWSAEGQVERDPLYKPIIEELNRLFPSEDDDRSKIR  60

Query  131  VLVPGAGLGRLVFEICQAGFAAEGNEISYHQLLASSWVLNHTRGPQQHALYPFALHFSNL  190
            +LVPGAGLGRL +E+   G+  +GNE SY  LL S+++LN+ +   Q  +YPF   FSN 
Sbjct  61   ILVPGAGLGRLAYELATLGYQVQGNEFSYFMLLCSNFILNYCKEENQITIYPFIHSFSNQ  120

Query  191  LSREQQLQKIMIPDKHPATVMMEAQAEDSSAFGTMSMSAADFVVLYNNPSNKEAFDAVAT  250
            L+R+ QL+ + IPD HP +        +    G  SM A DF+ +Y    +  ++D V T
Sbjct  121  LTRDDQLRPVQIPDVHPLS--------ELGPRGNFSMCAGDFLEVY--GEDANSYDVVVT  170

Query  251  VFFIDTAPNLIRYIETIRHCLKPNGLWINLGPLLWHFEDGSNKGHGSGSDHSQGIGEPGN  310
             FFIDTA N++ YI+TI   LKP G WINLGPLL+HFE   +                 +
Sbjct  171  CFFIDTAHNVLEYIDTIEKILKPGGHWINLGPLLYHFEPLPD---------------EMS  215

Query  311  VELTEEEVFCLVERMGFSIEKRLSAENRPLCGYIQDPESMLQNLYRPSHWVARKKT  366
            +EL+ E++  L  + GF  EK    E   L GY  + ESM+Q  Y    WVARK  
Sbjct  216  IELSLEDIKRLATKRGFKDEKE---ETGILNGYTTNYESMMQGYYGCVFWVARKPP  268



Lambda      K        H        a         alpha
   0.319    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0724    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00002640

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400340 pfam07942, N2227, N2227-like protein. This family feat...  329     2e-113


>CDD:400340 pfam07942, N2227, N2227-like protein.  This family features sequences 
that are similar to a region of hypothetical yeast 
gene product N2227. This is thought to be expressed during meiosis 
and may be involved in the defense response to stressful 
conditions.
Length=268

 Score = 329 bits (846),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 119/296 (40%), Positives = 168/296 (57%), Gaps = 28/296 (9%)

Query  71   QNWHGTATSSDVNKAHSTIRQFYRDWSAEGRAEREICYEPVLRDLRDEFDTRHSDRNEIR  130
             +     +  D++K  ST+RQ  RDWSAEG+ ER+  Y+P++ +L   F +   DR++IR
Sbjct  1    PHEPVNVSRGDMSKVRSTLRQIVRDWSAEGQVERDPLYKPIIEELNRLFPSEDDDRSKIR  60

Query  131  VLVPGAGLGRLVFEICQAGFAAEGNEISYHQLLASSWVLNHTRGPQQHALYPFALHFSNL  190
            +LVPGAGLGRL +E+   G+  +GNE SY  LL S+++LN+ +   Q  +YPF   FSN 
Sbjct  61   ILVPGAGLGRLAYELATLGYQVQGNEFSYFMLLCSNFILNYCKEENQITIYPFIHSFSNQ  120

Query  191  LSREQQLQKIMIPDKHPATVMMEAQAEDSSAFGTMSMSAADFVVLYNNPSNKEAFDAVAT  250
            L+R+ QL+ + IPD HP +        +    G  SM A DF+ +Y    +  ++D V T
Sbjct  121  LTRDDQLRPVQIPDVHPLS--------ELGPRGNFSMCAGDFLEVY--GEDANSYDVVVT  170

Query  251  VFFIDTAPNLIRYIETIRHCLKPNGLWINLGPLLWHFEDGSNKGHGSGSDHSQGIGEPGN  310
             FFIDTA N++ YI+TI   LKP G WINLGPLL+HFE   +                 +
Sbjct  171  CFFIDTAHNVLEYIDTIEKILKPGGHWINLGPLLYHFEPLPD---------------EMS  215

Query  311  VELTEEEVFCLVERMGFSIEKRLSAENRPLCGYIQDPESMLQNLYRPSHWVARKKT  366
            +EL+ E++  L  + GF  EK    E   L GY  + ESM+Q  Y    WVARK  
Sbjct  216  IELSLEDIKRLATKRGFKDEKE---ETGILNGYTTNYESMMQGYYGCVFWVARKPP  268



Lambda      K        H        a         alpha
   0.319    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00007880

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400340 pfam07942, N2227, N2227-like protein. This family feat...  329     2e-113


>CDD:400340 pfam07942, N2227, N2227-like protein.  This family features sequences 
that are similar to a region of hypothetical yeast 
gene product N2227. This is thought to be expressed during meiosis 
and may be involved in the defense response to stressful 
conditions.
Length=268

 Score = 329 bits (846),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 119/296 (40%), Positives = 168/296 (57%), Gaps = 28/296 (9%)

Query  71   QNWHGTATSSDVNKAHSTIRQFYRDWSAEGRAEREICYEPVLRDLRDEFDTRHSDRNEIR  130
             +     +  D++K  ST+RQ  RDWSAEG+ ER+  Y+P++ +L   F +   DR++IR
Sbjct  1    PHEPVNVSRGDMSKVRSTLRQIVRDWSAEGQVERDPLYKPIIEELNRLFPSEDDDRSKIR  60

Query  131  VLVPGAGLGRLVFEICQAGFAAEGNEISYHQLLASSWVLNHTRGPQQHALYPFALHFSNL  190
            +LVPGAGLGRL +E+   G+  +GNE SY  LL S+++LN+ +   Q  +YPF   FSN 
Sbjct  61   ILVPGAGLGRLAYELATLGYQVQGNEFSYFMLLCSNFILNYCKEENQITIYPFIHSFSNQ  120

Query  191  LSREQQLQKIMIPDKHPATVMMEAQAEDSSAFGTMSMSAADFVVLYNNPSNKEAFDAVAT  250
            L+R+ QL+ + IPD HP +        +    G  SM A DF+ +Y    +  ++D V T
Sbjct  121  LTRDDQLRPVQIPDVHPLS--------ELGPRGNFSMCAGDFLEVY--GEDANSYDVVVT  170

Query  251  VFFIDTAPNLIRYIETIRHCLKPNGLWINLGPLLWHFEDGSNKGHGSGSDHSQGIGEPGN  310
             FFIDTA N++ YI+TI   LKP G WINLGPLL+HFE   +                 +
Sbjct  171  CFFIDTAHNVLEYIDTIEKILKPGGHWINLGPLLYHFEPLPD---------------EMS  215

Query  311  VELTEEEVFCLVERMGFSIEKRLSAENRPLCGYIQDPESMLQNLYRPSHWVARKKT  366
            +EL+ E++  L  + GF  EK    E   L GY  + ESM+Q  Y    WVARK  
Sbjct  216  IELSLEDIKRLATKRGFKDEKE---ETGILNGYTTNYESMMQGYYGCVFWVARKPP  268



Lambda      K        H        a         alpha
   0.319    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00002641

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400340 pfam07942, N2227, N2227-like protein. This family feat...  329     2e-113


>CDD:400340 pfam07942, N2227, N2227-like protein.  This family features sequences 
that are similar to a region of hypothetical yeast 
gene product N2227. This is thought to be expressed during meiosis 
and may be involved in the defense response to stressful 
conditions.
Length=268

 Score = 329 bits (846),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 119/296 (40%), Positives = 168/296 (57%), Gaps = 28/296 (9%)

Query  71   QNWHGTATSSDVNKAHSTIRQFYRDWSAEGRAEREICYEPVLRDLRDEFDTRHSDRNEIR  130
             +     +  D++K  ST+RQ  RDWSAEG+ ER+  Y+P++ +L   F +   DR++IR
Sbjct  1    PHEPVNVSRGDMSKVRSTLRQIVRDWSAEGQVERDPLYKPIIEELNRLFPSEDDDRSKIR  60

Query  131  VLVPGAGLGRLVFEICQAGFAAEGNEISYHQLLASSWVLNHTRGPQQHALYPFALHFSNL  190
            +LVPGAGLGRL +E+   G+  +GNE SY  LL S+++LN+ +   Q  +YPF   FSN 
Sbjct  61   ILVPGAGLGRLAYELATLGYQVQGNEFSYFMLLCSNFILNYCKEENQITIYPFIHSFSNQ  120

Query  191  LSREQQLQKIMIPDKHPATVMMEAQAEDSSAFGTMSMSAADFVVLYNNPSNKEAFDAVAT  250
            L+R+ QL+ + IPD HP +        +    G  SM A DF+ +Y    +  ++D V T
Sbjct  121  LTRDDQLRPVQIPDVHPLS--------ELGPRGNFSMCAGDFLEVY--GEDANSYDVVVT  170

Query  251  VFFIDTAPNLIRYIETIRHCLKPNGLWINLGPLLWHFEDGSNKGHGSGSDHSQGIGEPGN  310
             FFIDTA N++ YI+TI   LKP G WINLGPLL+HFE   +                 +
Sbjct  171  CFFIDTAHNVLEYIDTIEKILKPGGHWINLGPLLYHFEPLPD---------------EMS  215

Query  311  VELTEEEVFCLVERMGFSIEKRLSAENRPLCGYIQDPESMLQNLYRPSHWVARKKT  366
            +EL+ E++  L  + GF  EK    E   L GY  + ESM+Q  Y    WVARK  
Sbjct  216  IELSLEDIKRLATKRGFKDEKE---ETGILNGYTTNYESMMQGYYGCVFWVARKPP  268



Lambda      K        H        a         alpha
   0.319    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00007881

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400340 pfam07942, N2227, N2227-like protein. This family feat...  329     2e-113


>CDD:400340 pfam07942, N2227, N2227-like protein.  This family features sequences 
that are similar to a region of hypothetical yeast 
gene product N2227. This is thought to be expressed during meiosis 
and may be involved in the defense response to stressful 
conditions.
Length=268

 Score = 329 bits (846),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 119/296 (40%), Positives = 168/296 (57%), Gaps = 28/296 (9%)

Query  71   QNWHGTATSSDVNKAHSTIRQFYRDWSAEGRAEREICYEPVLRDLRDEFDTRHSDRNEIR  130
             +     +  D++K  ST+RQ  RDWSAEG+ ER+  Y+P++ +L   F +   DR++IR
Sbjct  1    PHEPVNVSRGDMSKVRSTLRQIVRDWSAEGQVERDPLYKPIIEELNRLFPSEDDDRSKIR  60

Query  131  VLVPGAGLGRLVFEICQAGFAAEGNEISYHQLLASSWVLNHTRGPQQHALYPFALHFSNL  190
            +LVPGAGLGRL +E+   G+  +GNE SY  LL S+++LN+ +   Q  +YPF   FSN 
Sbjct  61   ILVPGAGLGRLAYELATLGYQVQGNEFSYFMLLCSNFILNYCKEENQITIYPFIHSFSNQ  120

Query  191  LSREQQLQKIMIPDKHPATVMMEAQAEDSSAFGTMSMSAADFVVLYNNPSNKEAFDAVAT  250
            L+R+ QL+ + IPD HP +        +    G  SM A DF+ +Y    +  ++D V T
Sbjct  121  LTRDDQLRPVQIPDVHPLS--------ELGPRGNFSMCAGDFLEVY--GEDANSYDVVVT  170

Query  251  VFFIDTAPNLIRYIETIRHCLKPNGLWINLGPLLWHFEDGSNKGHGSGSDHSQGIGEPGN  310
             FFIDTA N++ YI+TI   LKP G WINLGPLL+HFE   +                 +
Sbjct  171  CFFIDTAHNVLEYIDTIEKILKPGGHWINLGPLLYHFEPLPD---------------EMS  215

Query  311  VELTEEEVFCLVERMGFSIEKRLSAENRPLCGYIQDPESMLQNLYRPSHWVARKKT  366
            +EL+ E++  L  + GF  EK    E   L GY  + ESM+Q  Y    WVARK  
Sbjct  216  IELSLEDIKRLATKRGFKDEKE---ETGILNGYTTNYESMMQGYYGCVFWVARKPP  268



Lambda      K        H        a         alpha
   0.319    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00002642

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400340 pfam07942, N2227, N2227-like protein. This family feat...  329     2e-113


>CDD:400340 pfam07942, N2227, N2227-like protein.  This family features sequences 
that are similar to a region of hypothetical yeast 
gene product N2227. This is thought to be expressed during meiosis 
and may be involved in the defense response to stressful 
conditions.
Length=268

 Score = 329 bits (846),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 119/296 (40%), Positives = 168/296 (57%), Gaps = 28/296 (9%)

Query  71   QNWHGTATSSDVNKAHSTIRQFYRDWSAEGRAEREICYEPVLRDLRDEFDTRHSDRNEIR  130
             +     +  D++K  ST+RQ  RDWSAEG+ ER+  Y+P++ +L   F +   DR++IR
Sbjct  1    PHEPVNVSRGDMSKVRSTLRQIVRDWSAEGQVERDPLYKPIIEELNRLFPSEDDDRSKIR  60

Query  131  VLVPGAGLGRLVFEICQAGFAAEGNEISYHQLLASSWVLNHTRGPQQHALYPFALHFSNL  190
            +LVPGAGLGRL +E+   G+  +GNE SY  LL S+++LN+ +   Q  +YPF   FSN 
Sbjct  61   ILVPGAGLGRLAYELATLGYQVQGNEFSYFMLLCSNFILNYCKEENQITIYPFIHSFSNQ  120

Query  191  LSREQQLQKIMIPDKHPATVMMEAQAEDSSAFGTMSMSAADFVVLYNNPSNKEAFDAVAT  250
            L+R+ QL+ + IPD HP +        +    G  SM A DF+ +Y    +  ++D V T
Sbjct  121  LTRDDQLRPVQIPDVHPLS--------ELGPRGNFSMCAGDFLEVY--GEDANSYDVVVT  170

Query  251  VFFIDTAPNLIRYIETIRHCLKPNGLWINLGPLLWHFEDGSNKGHGSGSDHSQGIGEPGN  310
             FFIDTA N++ YI+TI   LKP G WINLGPLL+HFE   +                 +
Sbjct  171  CFFIDTAHNVLEYIDTIEKILKPGGHWINLGPLLYHFEPLPD---------------EMS  215

Query  311  VELTEEEVFCLVERMGFSIEKRLSAENRPLCGYIQDPESMLQNLYRPSHWVARKKT  366
            +EL+ E++  L  + GF  EK    E   L GY  + ESM+Q  Y    WVARK  
Sbjct  216  IELSLEDIKRLATKRGFKDEKE---ETGILNGYTTNYESMMQGYYGCVFWVARKPP  268



Lambda      K        H        a         alpha
   0.319    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00007882

Length=155
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465017 pfam16093, PAC4, Proteasome assembly chaperone 4. PAC4...  86.9    5e-24


>CDD:465017 pfam16093, PAC4, Proteasome assembly chaperone 4.  PAC4 or proteasome 
assembly chaperone 4 protein promotes assembly of the 
20S proteasome. It interacts with PSMG3. It associates with 
alpha subunits of the 20S proteasome. At the very C-terminal 
is a crucial HbYX or hydrophobic-tyrosine-X sequence motif 
that, in proteasome activators, opens the 20S proteasome 
entry pore.
Length=72

 Score = 86.9 bits (216),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 7/79 (9%)

Query  39   LTILETCVTIFLATTTPGEPGGSLKPMGSFIYAMPDRHSPRSVISTVLYSSPSTEEYTSR  98
            LT L   + +++ T +P E       +GS   AMP R++    +ST L   PS++++++R
Sbjct  1    LTKLAKSIFLWVGTASPEE-------LGSLAVAMPTRYNSTPPLSTTLLGDPSSDDFSTR  53

Query  99   VAKILARRMSLPVYVGCSI  117
            +A+ LARR    VYV C++
Sbjct  54   LAQRLARRTGKQVYVSCNL  72



Lambda      K        H        a         alpha
   0.315    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00002643

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.131    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00002644

Length=826
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  94.9    5e-22


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 94.9 bits (236),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 86/193 (45%), Gaps = 21/193 (11%)

Query  306  LAQYYSCIHCVLPIIHWPSFMVEYENVYRNGSLVGVPREWAAVLFGVFACGSLHTLDRNR  365
            L  ++   H   PI+H PSF+ +Y  ++ + S    P     +L  + A G+L +     
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASP----LLLLAILALGALFSESPTA  56

Query  366  EEEGKEFIKTSCGVID-VWQDNFTLDQAR----------CALLVSIFLYEVNSKSASWVW  414
                    + + G+   +       +               LL+ ++      +   W +
Sbjct  57   RSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRY  116

Query  415  IGSAVRIAQELGLHIESGPW------PVVEREMRRRVWWGMYAWDRLLALEMGKPVLIND  468
             G A+R+A+ LGLH +           + E E+RRR++W  +  DRL++L +G+P L++D
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSD  176

Query  469  QDCDVDLPCPFDE  481
             D D+ LPC  D+
Sbjct  177  SDIDLPLPCDDDD  189



Lambda      K        H        a         alpha
   0.318    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1049360734


Query= TCONS_00007883

Length=635
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  92.6    2e-21


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 92.6 bits (230),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 86/193 (45%), Gaps = 21/193 (11%)

Query  115  LAQYYSCIHCVLPIIHWPSFMVEYENVYRNGSLVGVPREWAAVLFGVFACGSLHTLDRNR  174
            L  ++   H   PI+H PSF+ +Y  ++ + S    P     +L  + A G+L +     
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASP----LLLLAILALGALFSESPTA  56

Query  175  EEEGKEFIKTSCGVID-VWQDNFTLDQAR----------CALLVSIFLYEVNSKSASWVW  223
                    + + G+   +       +               LL+ ++      +   W +
Sbjct  57   RSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRY  116

Query  224  IGSAVRIAQELGLHIESGPW------PVVEREMRRRVWWGMYAWDRLLALEMGKPVLIND  277
             G A+R+A+ LGLH +           + E E+RRR++W  +  DRL++L +G+P L++D
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSD  176

Query  278  QDCDVDLPCPFDE  290
             D D+ LPC  D+
Sbjct  177  SDIDLPLPCDDDD  189



Lambda      K        H        a         alpha
   0.320    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 799336180


Query= TCONS_00002645

Length=785
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  94.5    6e-22


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 94.5 bits (235),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 86/193 (45%), Gaps = 21/193 (11%)

Query  265  LAQYYSCIHCVLPIIHWPSFMVEYENVYRNGSLVGVPREWAAVLFGVFACGSLHTLDRNR  324
            L  ++   H   PI+H PSF+ +Y  ++ + S    P     +L  + A G+L +     
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASP----LLLLAILALGALFSESPTA  56

Query  325  EEEGKEFIKTSCGVID-VWQDNFTLDQAR----------CALLVSIFLYEVNSKSASWVW  373
                    + + G+   +       +               LL+ ++      +   W +
Sbjct  57   RSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRY  116

Query  374  IGSAVRIAQELGLHIESGPW------PVVEREMRRRVWWGMYAWDRLLALEMGKPVLIND  427
             G A+R+A+ LGLH +           + E E+RRR++W  +  DRL++L +G+P L++D
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSD  176

Query  428  QDCDVDLPCPFDE  440
             D D+ LPC  D+
Sbjct  177  SDIDLPLPCDDDD  189



Lambda      K        H        a         alpha
   0.318    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1005510032


Query= TCONS_00002647

Length=997
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This P...  245     3e-76
CDD:465544 pfam17871, AAA_lid_9, AAA lid domain. This entry repre...  126     6e-35
CDD:463090 pfam10431, ClpB_D2-small, C-terminal, D2-small domain,...  105     6e-28
CDD:459627 pfam00004, AAA, ATPase family associated with various ...  70.3    8e-15


>CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily).  This Pfam entry 
includes some of the AAA proteins not detected by the pfam00004 
model.
Length=168

 Score = 245 bits (627),  Expect = 3e-76, Method: Composition-based stats.
 Identities = 90/164 (55%), Positives = 115/164 (70%), Gaps = 1/164 (1%)

Query  703  SFLFCGPSGTGKTLLTKALAEFLFDDPKAMIRFDMSEYQERHSLSRMIGAPPGYVGHDAG  762
            SFLF GP+G GKT L KALAE LF D +A+IR DMSEY E HS+SR+IGAPPGYVG++ G
Sbjct  5    SFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEG  64

Query  763  GQLTESLRRRPFSILLFDEVEKAAKEVLTVLLQLMDDGRITDGQGRIVDAKNCIVVMTSN  822
            GQLTE++RR+P+SI+L DE+EKA   V   LLQ+++ G +TD QGR VD KN + +MT N
Sbjct  65   GQLTEAVRRKPYSIVLIDEIEKAHPGVQNDLLQILEGGTLTDKQGRTVDFKNTLFIMTGN  124

Query  823  LGAEFLS-RPTTKDGRIDPQTRELVMGALRDYFLPEFLNRISSI  865
             G+E +S      D       +E VM  L+  F+PEFL R+  I
Sbjct  125  FGSEKISDASRLGDSPDYELLKEEVMDLLKKGFIPEFLGRLPII  168


>CDD:465544 pfam17871, AAA_lid_9, AAA lid domain.  This entry represents 
the alpha helical AAA+ lid domain that is found to the C-terminus 
of AAA domains.
Length=104

 Score = 126 bits (320),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 58/104 (56%), Positives = 75/104 (72%), Gaps = 0/104 (0%)

Query  434  TVSETISILRGLKEKYEVHHGVNILDGAIVAAAELAARYLTARRLPDSAVDLIDEAAAAV  493
            +V E I ILRGLK KYE HHGV I D A+ AA +L+ RY+T R LPD A+DL+DEA A V
Sbjct  1    SVEEAIEILRGLKPKYEKHHGVRISDEALEAAVKLSKRYITDRFLPDKAIDLLDEACARV  60

Query  494  RVTRESEPEALDNLERRLRQLQIEIHALEREKDDASKARLEAAK  537
            R+++ES+PE L++LER L +L+IE  ALERE+D     RL   +
Sbjct  61   RLSQESKPEELEDLERELAKLEIEKEALEREQDFEKAERLAKLE  104


>CDD:463090 pfam10431, ClpB_D2-small, C-terminal, D2-small domain, of ClpB 
protein.  This is the C-terminal domain of ClpB protein, referred 
to as the D2-small domain, and is a mixed alpha-beta 
structure. Compared with the D1-small domain (included in AAA, 
pfam00004) it lacks the long coiled-coil insertion, and 
instead of helix C4 contains a beta-strand (e3) that is part 
of a three stranded beta-pleated sheet. In Thermophilus the 
whole protein forms a hexamer with the D1-small and D2-small 
domains located on the outside of the hexamer, with the long 
coiled-coil being exposed on the surface. The D2-small domain 
is essential for oligomerization, forming a tight interface 
with the D2-large domain of a neighboring subunit and thereby 
providing enough binding energy to stabilize the functional 
assembly. The domain is associated with two Clp_N, pfam02861, 
at the N-terminus as well as AAA, pfam00004 and AAA_2, 
pfam07724.
Length=81

 Score = 105 bits (266),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 61/83 (73%), Gaps = 2/83 (2%)

Query  871  LTRKEIRKIVDLRLNEVQRRLEQNNRNVTIQCTEEVKDYLGEAGYSPAYGARPLARIIER  930
            L+++E+RKIVDL+L E+Q+RL +  R +T++ T+  KD+L E GY P YGARPL R I+R
Sbjct  1    LSKEELRKIVDLQLKELQKRLAE--RGITLELTDAAKDWLAEKGYDPEYGARPLRRAIQR  58

Query  931  EVLNKLAVLILRGSIQDGEVARV  953
            E+ + LA  IL G +++G+  RV
Sbjct  59   EIEDPLAEEILSGELKEGDTVRV  81


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 70.3 bits (173),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 37/143 (26%), Positives = 58/143 (41%), Gaps = 27/143 (19%)

Query  295  LIGEPGVGKTTIVEGLARRIVNADVPANLAQCRLLSLDVGSLVAGSKYRGEFEERMKGVL  354
            L G PG GKTT+ + +A+                + +    LV  SKY GE E+R++ + 
Sbjct  3    LYGPPGTGKTTLAKAVAKE----------LGAPFIEISGSELV--SKYVGESEKRLRELF  50

Query  355  KEIEESKDTIVLFVDEIHLLMGAGSSGEGG--MDAANLLKPMLARGQLHC-----IGATT  407
            +  ++    + +F+DEI  L G+  SG         N L   L            I AT 
Sbjct  51   EAAKKLAPCV-IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATN  109

Query  408  LGEYRKYIEK-DQAFERRFQQVL  429
                    +K D A   RF +++
Sbjct  110  ------RPDKLDPALLGRFDRII  126



Lambda      K        H        a         alpha
   0.316    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1275704276


Query= TCONS_00002646

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00007884

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430622 pfam09451, ATG27, Autophagy-related protein 27             150     2e-44


>CDD:430622 pfam09451, ATG27, Autophagy-related protein 27.  
Length=261

 Score = 150 bits (382),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 72/261 (28%), Positives = 101/261 (39%), Gaps = 74/261 (28%)

Query  17   FTGLASASGSFDCRNIIAEGIK-YDLYGLHGVHTIYHVDKAEDYIVNTTYVLDICKALGK  75
                ASA  +FDC     +G+K YDL  L G H++           NTT+ ++IC+ L K
Sbjct  7    LLAAASAVSAFDCSV--DKGLKKYDLSKLKGPHSVSTTRDTPPSTTNTTWTINICEPLKK  64

Query  76   ASIRG-DLKCGTSKNICGFQYKYTPDGSEEISHAFPIAGLDPLGHGSKDAEVTRLKG-DG  133
                    +C     +CG       DG + I+   PI      G  + D EVTRLK  D 
Sbjct  65   DKDVDKPDQCPKGTRVCGITRVIL-DGDDRITQVIPI------GGSNLDPEVTRLKTSDE  117

Query  134  QEGLLVKLAGGEYIDKDKKKKDARAVIEFQCDPDRSGLEGLSSVEEEEEEEETRRRLVVR  193
            +EGL + L GG++           A+IEF CD                            
Sbjct  118  KEGLRLTLKGGKW-----GGNKQDAIIEFICD----------------------------  144

Query  194  EDEGDKNKEKDKEKTDPNDGSDPSRSLQFESFGPADDDAYVLKLKWRTRYACDNYVRDRK  253
                                   S SL F S+  + +D   L+L+W+T+YAC+    D  
Sbjct  145  -----------------------SDSLTFVSYDGSQEDD-KLRLEWKTKYACEKDESDPD  180

Query  254  GD-----GSSHWGFFTWLIIM  269
                   G S WG+FTW  I+
Sbjct  181  DGDGGGNGGSGWGWFTWFFII  201



Lambda      K        H        a         alpha
   0.317    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 372672612


Query= TCONS_00002648

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430622 pfam09451, ATG27, Autophagy-related protein 27             276     2e-93


>CDD:430622 pfam09451, ATG27, Autophagy-related protein 27.  
Length=261

 Score = 276 bits (709),  Expect = 2e-93, Method: Composition-based stats.
 Identities = 119/321 (37%), Positives = 154/321 (48%), Gaps = 74/321 (23%)

Query  17   FTGLASASGSFDCRNIIAEGIK-YDLYGLHGVHTIYHVDKAEDYIVNTTYVLDICKALGK  75
                ASA  +FDC     +G+K YDL  L G H++           NTT+ ++IC+ L K
Sbjct  7    LLAAASAVSAFDCSV--DKGLKKYDLSKLKGPHSVSTTRDTPPSTTNTTWTINICEPLKK  64

Query  76   ASIRG-DLKCGTSKNICGFQYKYTPDGSEEISHAFPIAGLDPLGHGSKDAEVTRLKG-DG  133
                    +C     +CG       DG + I+   PI      G  + D EVTRLK  D 
Sbjct  65   DKDVDKPDQCPKGTRVCGITRVIL-DGDDRITQVIPI------GGSNLDPEVTRLKTSDE  117

Query  134  QEGLLVKLAGGEYIDKDKKKKDARAVIEFQCDPDRSGLEGLSSVEEEEEEEETRRRLVVR  193
            +EGL + L GG++           A+IEF CD                            
Sbjct  118  KEGLRLTLKGGKW-----GGNKQDAIIEFICD----------------------------  144

Query  194  EDEGDKNKEKDKEKTDPNDGSDPSRSLQFESFGPADDDAYVLKLKWRTRYACDNYVRDRK  253
                                   S SL F S+  + +D   L+L+W+T+YAC+    D  
Sbjct  145  -----------------------SDSLTFVSYDGSQEDD-KLRLEWKTKYACEKDESDPD  180

Query  254  GD-----GSSHWGFFTWLIIILFLCVAAYLIFGSWLNYNRYGARGWDLLPHGDTLRDIPY  308
                   G S WG+FTW  IILFL  AAYLIFGSWLNYNRYGARGWDLLPHGD  RD+PY
Sbjct  181  DGDGGGNGGSGWGWFTWFFIILFLFTAAYLIFGSWLNYNRYGARGWDLLPHGDFWRDLPY  240

Query  309  IFQDWLRRVINTLQGSGSRGG  329
            + +D +R+V+ T+QGSGSRGG
Sbjct  241  LLKDVVRKVVGTVQGSGSRGG  261



Lambda      K        H        a         alpha
   0.318    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00002650

Length=997
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This P...  245     3e-76
CDD:465544 pfam17871, AAA_lid_9, AAA lid domain. This entry repre...  126     6e-35
CDD:463090 pfam10431, ClpB_D2-small, C-terminal, D2-small domain,...  105     6e-28
CDD:459627 pfam00004, AAA, ATPase family associated with various ...  70.3    8e-15


>CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily).  This Pfam entry 
includes some of the AAA proteins not detected by the pfam00004 
model.
Length=168

 Score = 245 bits (627),  Expect = 3e-76, Method: Composition-based stats.
 Identities = 90/164 (55%), Positives = 115/164 (70%), Gaps = 1/164 (1%)

Query  703  SFLFCGPSGTGKTLLTKALAEFLFDDPKAMIRFDMSEYQERHSLSRMIGAPPGYVGHDAG  762
            SFLF GP+G GKT L KALAE LF D +A+IR DMSEY E HS+SR+IGAPPGYVG++ G
Sbjct  5    SFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEG  64

Query  763  GQLTESLRRRPFSILLFDEVEKAAKEVLTVLLQLMDDGRITDGQGRIVDAKNCIVVMTSN  822
            GQLTE++RR+P+SI+L DE+EKA   V   LLQ+++ G +TD QGR VD KN + +MT N
Sbjct  65   GQLTEAVRRKPYSIVLIDEIEKAHPGVQNDLLQILEGGTLTDKQGRTVDFKNTLFIMTGN  124

Query  823  LGAEFLS-RPTTKDGRIDPQTRELVMGALRDYFLPEFLNRISSI  865
             G+E +S      D       +E VM  L+  F+PEFL R+  I
Sbjct  125  FGSEKISDASRLGDSPDYELLKEEVMDLLKKGFIPEFLGRLPII  168


>CDD:465544 pfam17871, AAA_lid_9, AAA lid domain.  This entry represents 
the alpha helical AAA+ lid domain that is found to the C-terminus 
of AAA domains.
Length=104

 Score = 126 bits (320),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 58/104 (56%), Positives = 75/104 (72%), Gaps = 0/104 (0%)

Query  434  TVSETISILRGLKEKYEVHHGVNILDGAIVAAAELAARYLTARRLPDSAVDLIDEAAAAV  493
            +V E I ILRGLK KYE HHGV I D A+ AA +L+ RY+T R LPD A+DL+DEA A V
Sbjct  1    SVEEAIEILRGLKPKYEKHHGVRISDEALEAAVKLSKRYITDRFLPDKAIDLLDEACARV  60

Query  494  RVTRESEPEALDNLERRLRQLQIEIHALEREKDDASKARLEAAK  537
            R+++ES+PE L++LER L +L+IE  ALERE+D     RL   +
Sbjct  61   RLSQESKPEELEDLERELAKLEIEKEALEREQDFEKAERLAKLE  104


>CDD:463090 pfam10431, ClpB_D2-small, C-terminal, D2-small domain, of ClpB 
protein.  This is the C-terminal domain of ClpB protein, referred 
to as the D2-small domain, and is a mixed alpha-beta 
structure. Compared with the D1-small domain (included in AAA, 
pfam00004) it lacks the long coiled-coil insertion, and 
instead of helix C4 contains a beta-strand (e3) that is part 
of a three stranded beta-pleated sheet. In Thermophilus the 
whole protein forms a hexamer with the D1-small and D2-small 
domains located on the outside of the hexamer, with the long 
coiled-coil being exposed on the surface. The D2-small domain 
is essential for oligomerization, forming a tight interface 
with the D2-large domain of a neighboring subunit and thereby 
providing enough binding energy to stabilize the functional 
assembly. The domain is associated with two Clp_N, pfam02861, 
at the N-terminus as well as AAA, pfam00004 and AAA_2, 
pfam07724.
Length=81

 Score = 105 bits (266),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 61/83 (73%), Gaps = 2/83 (2%)

Query  871  LTRKEIRKIVDLRLNEVQRRLEQNNRNVTIQCTEEVKDYLGEAGYSPAYGARPLARIIER  930
            L+++E+RKIVDL+L E+Q+RL +  R +T++ T+  KD+L E GY P YGARPL R I+R
Sbjct  1    LSKEELRKIVDLQLKELQKRLAE--RGITLELTDAAKDWLAEKGYDPEYGARPLRRAIQR  58

Query  931  EVLNKLAVLILRGSIQDGEVARV  953
            E+ + LA  IL G +++G+  RV
Sbjct  59   EIEDPLAEEILSGELKEGDTVRV  81


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 70.3 bits (173),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 37/143 (26%), Positives = 58/143 (41%), Gaps = 27/143 (19%)

Query  295  LIGEPGVGKTTIVEGLARRIVNADVPANLAQCRLLSLDVGSLVAGSKYRGEFEERMKGVL  354
            L G PG GKTT+ + +A+                + +    LV  SKY GE E+R++ + 
Sbjct  3    LYGPPGTGKTTLAKAVAKE----------LGAPFIEISGSELV--SKYVGESEKRLRELF  50

Query  355  KEIEESKDTIVLFVDEIHLLMGAGSSGEGG--MDAANLLKPMLARGQLHC-----IGATT  407
            +  ++    + +F+DEI  L G+  SG         N L   L            I AT 
Sbjct  51   EAAKKLAPCV-IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATN  109

Query  408  LGEYRKYIEK-DQAFERRFQQVL  429
                    +K D A   RF +++
Sbjct  110  ------RPDKLDPALLGRFDRII  126



Lambda      K        H        a         alpha
   0.316    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1275704276


Query= TCONS_00002649

Length=997
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This P...  245     3e-76
CDD:465544 pfam17871, AAA_lid_9, AAA lid domain. This entry repre...  126     6e-35
CDD:463090 pfam10431, ClpB_D2-small, C-terminal, D2-small domain,...  105     6e-28
CDD:459627 pfam00004, AAA, ATPase family associated with various ...  70.3    8e-15


>CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily).  This Pfam entry 
includes some of the AAA proteins not detected by the pfam00004 
model.
Length=168

 Score = 245 bits (627),  Expect = 3e-76, Method: Composition-based stats.
 Identities = 90/164 (55%), Positives = 115/164 (70%), Gaps = 1/164 (1%)

Query  703  SFLFCGPSGTGKTLLTKALAEFLFDDPKAMIRFDMSEYQERHSLSRMIGAPPGYVGHDAG  762
            SFLF GP+G GKT L KALAE LF D +A+IR DMSEY E HS+SR+IGAPPGYVG++ G
Sbjct  5    SFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEG  64

Query  763  GQLTESLRRRPFSILLFDEVEKAAKEVLTVLLQLMDDGRITDGQGRIVDAKNCIVVMTSN  822
            GQLTE++RR+P+SI+L DE+EKA   V   LLQ+++ G +TD QGR VD KN + +MT N
Sbjct  65   GQLTEAVRRKPYSIVLIDEIEKAHPGVQNDLLQILEGGTLTDKQGRTVDFKNTLFIMTGN  124

Query  823  LGAEFLS-RPTTKDGRIDPQTRELVMGALRDYFLPEFLNRISSI  865
             G+E +S      D       +E VM  L+  F+PEFL R+  I
Sbjct  125  FGSEKISDASRLGDSPDYELLKEEVMDLLKKGFIPEFLGRLPII  168


>CDD:465544 pfam17871, AAA_lid_9, AAA lid domain.  This entry represents 
the alpha helical AAA+ lid domain that is found to the C-terminus 
of AAA domains.
Length=104

 Score = 126 bits (320),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 58/104 (56%), Positives = 75/104 (72%), Gaps = 0/104 (0%)

Query  434  TVSETISILRGLKEKYEVHHGVNILDGAIVAAAELAARYLTARRLPDSAVDLIDEAAAAV  493
            +V E I ILRGLK KYE HHGV I D A+ AA +L+ RY+T R LPD A+DL+DEA A V
Sbjct  1    SVEEAIEILRGLKPKYEKHHGVRISDEALEAAVKLSKRYITDRFLPDKAIDLLDEACARV  60

Query  494  RVTRESEPEALDNLERRLRQLQIEIHALEREKDDASKARLEAAK  537
            R+++ES+PE L++LER L +L+IE  ALERE+D     RL   +
Sbjct  61   RLSQESKPEELEDLERELAKLEIEKEALEREQDFEKAERLAKLE  104


>CDD:463090 pfam10431, ClpB_D2-small, C-terminal, D2-small domain, of ClpB 
protein.  This is the C-terminal domain of ClpB protein, referred 
to as the D2-small domain, and is a mixed alpha-beta 
structure. Compared with the D1-small domain (included in AAA, 
pfam00004) it lacks the long coiled-coil insertion, and 
instead of helix C4 contains a beta-strand (e3) that is part 
of a three stranded beta-pleated sheet. In Thermophilus the 
whole protein forms a hexamer with the D1-small and D2-small 
domains located on the outside of the hexamer, with the long 
coiled-coil being exposed on the surface. The D2-small domain 
is essential for oligomerization, forming a tight interface 
with the D2-large domain of a neighboring subunit and thereby 
providing enough binding energy to stabilize the functional 
assembly. The domain is associated with two Clp_N, pfam02861, 
at the N-terminus as well as AAA, pfam00004 and AAA_2, 
pfam07724.
Length=81

 Score = 105 bits (266),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 61/83 (73%), Gaps = 2/83 (2%)

Query  871  LTRKEIRKIVDLRLNEVQRRLEQNNRNVTIQCTEEVKDYLGEAGYSPAYGARPLARIIER  930
            L+++E+RKIVDL+L E+Q+RL +  R +T++ T+  KD+L E GY P YGARPL R I+R
Sbjct  1    LSKEELRKIVDLQLKELQKRLAE--RGITLELTDAAKDWLAEKGYDPEYGARPLRRAIQR  58

Query  931  EVLNKLAVLILRGSIQDGEVARV  953
            E+ + LA  IL G +++G+  RV
Sbjct  59   EIEDPLAEEILSGELKEGDTVRV  81


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 70.3 bits (173),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 37/143 (26%), Positives = 58/143 (41%), Gaps = 27/143 (19%)

Query  295  LIGEPGVGKTTIVEGLARRIVNADVPANLAQCRLLSLDVGSLVAGSKYRGEFEERMKGVL  354
            L G PG GKTT+ + +A+                + +    LV  SKY GE E+R++ + 
Sbjct  3    LYGPPGTGKTTLAKAVAKE----------LGAPFIEISGSELV--SKYVGESEKRLRELF  50

Query  355  KEIEESKDTIVLFVDEIHLLMGAGSSGEGG--MDAANLLKPMLARGQLHC-----IGATT  407
            +  ++    + +F+DEI  L G+  SG         N L   L            I AT 
Sbjct  51   EAAKKLAPCV-IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATN  109

Query  408  LGEYRKYIEK-DQAFERRFQQVL  429
                    +K D A   RF +++
Sbjct  110  ------RPDKLDPALLGRFDRII  126



Lambda      K        H        a         alpha
   0.316    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1275704276


Query= TCONS_00002651

Length=629
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This P...  243     5e-78
CDD:465544 pfam17871, AAA_lid_9, AAA lid domain. This entry repre...  125     6e-35
CDD:463090 pfam10431, ClpB_D2-small, C-terminal, D2-small domain,...  104     1e-27


>CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily).  This Pfam entry 
includes some of the AAA proteins not detected by the pfam00004 
model.
Length=168

 Score = 243 bits (622),  Expect = 5e-78, Method: Composition-based stats.
 Identities = 90/164 (55%), Positives = 115/164 (70%), Gaps = 1/164 (1%)

Query  335  SFLFCGPSGTGKTLLTKALAEFLFDDPKAMIRFDMSEYQERHSLSRMIGAPPGYVGHDAG  394
            SFLF GP+G GKT L KALAE LF D +A+IR DMSEY E HS+SR+IGAPPGYVG++ G
Sbjct  5    SFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEG  64

Query  395  GQLTESLRRRPFSILLFDEVEKAAKEVLTVLLQLMDDGRITDGQGRIVDAKNCIVVMTSN  454
            GQLTE++RR+P+SI+L DE+EKA   V   LLQ+++ G +TD QGR VD KN + +MT N
Sbjct  65   GQLTEAVRRKPYSIVLIDEIEKAHPGVQNDLLQILEGGTLTDKQGRTVDFKNTLFIMTGN  124

Query  455  LGAEFLS-RPTTKDGRIDPQTRELVMGALRDYFLPEFLNRISSI  497
             G+E +S      D       +E VM  L+  F+PEFL R+  I
Sbjct  125  FGSEKISDASRLGDSPDYELLKEEVMDLLKKGFIPEFLGRLPII  168


>CDD:465544 pfam17871, AAA_lid_9, AAA lid domain.  This entry represents 
the alpha helical AAA+ lid domain that is found to the C-terminus 
of AAA domains.
Length=104

 Score = 125 bits (317),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 58/104 (56%), Positives = 75/104 (72%), Gaps = 0/104 (0%)

Query  66   TVSETISILRGLKEKYEVHHGVNILDGAIVAAAELAARYLTARRLPDSAVDLIDEAAAAV  125
            +V E I ILRGLK KYE HHGV I D A+ AA +L+ RY+T R LPD A+DL+DEA A V
Sbjct  1    SVEEAIEILRGLKPKYEKHHGVRISDEALEAAVKLSKRYITDRFLPDKAIDLLDEACARV  60

Query  126  RVTRESEPEALDNLERRLRQLQIEIHALEREKDDASKARLEAAK  169
            R+++ES+PE L++LER L +L+IE  ALERE+D     RL   +
Sbjct  61   RLSQESKPEELEDLERELAKLEIEKEALEREQDFEKAERLAKLE  104


>CDD:463090 pfam10431, ClpB_D2-small, C-terminal, D2-small domain, of ClpB 
protein.  This is the C-terminal domain of ClpB protein, referred 
to as the D2-small domain, and is a mixed alpha-beta 
structure. Compared with the D1-small domain (included in AAA, 
pfam00004) it lacks the long coiled-coil insertion, and 
instead of helix C4 contains a beta-strand (e3) that is part 
of a three stranded beta-pleated sheet. In Thermophilus the 
whole protein forms a hexamer with the D1-small and D2-small 
domains located on the outside of the hexamer, with the long 
coiled-coil being exposed on the surface. The D2-small domain 
is essential for oligomerization, forming a tight interface 
with the D2-large domain of a neighboring subunit and thereby 
providing enough binding energy to stabilize the functional 
assembly. The domain is associated with two Clp_N, pfam02861, 
at the N-terminus as well as AAA, pfam00004 and AAA_2, 
pfam07724.
Length=81

 Score = 104 bits (262),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 61/83 (73%), Gaps = 2/83 (2%)

Query  503  LTRKEIRKIVDLRLNEVQRRLEQNNRNVTIQCTEEVKDYLGEAGYSPAYGARPLARIIER  562
            L+++E+RKIVDL+L E+Q+RL +  R +T++ T+  KD+L E GY P YGARPL R I+R
Sbjct  1    LSKEELRKIVDLQLKELQKRLAE--RGITLELTDAAKDWLAEKGYDPEYGARPLRRAIQR  58

Query  563  EVLNKLAVLILRGSIQDGEVARV  585
            E+ + LA  IL G +++G+  RV
Sbjct  59   EIEDPLAEEILSGELKEGDTVRV  81



Lambda      K        H        a         alpha
   0.316    0.134    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790487440


Query= TCONS_00007886

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00002652

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00002653

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00002655

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              67.0    2e-13


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 67.0 bits (164),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 47/206 (23%), Positives = 95/206 (46%), Gaps = 5/206 (2%)

Query  1    MSVGFVTGLLYMIAVFYSINDLDLVMSNPYGFPLAEIYRQATGTRSGSLGLLIVAFLPTV  60
            + +  V  +L  IA F  + D ++ +S+  G   A +  QA G + G++ ++I+  L  +
Sbjct  227  VIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAA-LLFQAVGGKWGAIIVVILLALSLL  285

Query  61   ITCAGCYITAGRTLWTISRDKATPFSGWLGRINTRMHNPFNATLVCGVIITILACIYVGS  120
                   + A R L+ ++RD   PFS +  ++N    +P  A ++  ++  IL  +++ S
Sbjct  286  GAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKF-GSPIRAIILTAILSLILLLLFLLS  344

Query  121  TTAFNAFVGCFVQLSSLSYLAAILPHVLTRRSTFQPGYFWMGRIGYVLNILASIYIIAFI  180
              A+NA +        LSYL  I+  ++ R    +          + + I   ++ +  I
Sbjct  345  PAAYNALLSLSAYGYLLSYLLPIIGLLILR---KKRPDLGRIPGRWPVAIFGILFSLFLI  401

Query  181  VIFCFPYSMPTSAATMNYASLMTGGL  206
            V   FP   P + +++NYA ++    
Sbjct  402  VALFFPPVGPATGSSLNYAIILIVAF  427



Lambda      K        H        a         alpha
   0.329    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00002654

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              143     1e-38
CDD:366028 pfam00324, AA_permease, Amino acid permease                75.0    5e-15


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 143 bits (362),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 102/422 (24%), Positives = 193/422 (46%), Gaps = 19/422 (5%)

Query  1    MYNGGPAGVIYEFIAVSVCYWMVAASIAELASAMPSASGVYHWASITAGKYGRVCGFFAG  60
            + +GGPA +++ +IA  +    V    AEL+SA+P + G+Y +       +G+   F AG
Sbjct  25   VASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGGIYVYLENA---FGKFVAFLAG  81

Query  61   FWNCLAWILGAASMSAILGQQTVSMYTLMHPDFVPHAWHTFISFIICTWMCCCIVLFMNR  120
            + N  A++LG AS +++       + + + PD VP  W T+   I    +   I +   R
Sbjct  82   WSNWFAYVLGLASSASVAAS---YLLSALGPDLVPTTWLTYGIAIAILIIFAIINIRGVR  138

Query  121  FLPHIGNLGMFFILAGVLITIIVCAVMPHVNGQAYLDDKTVWRTWNNQTGWSSNGFVFVA  180
                I N+     L   LI II+  +    +G  +      W T+              A
Sbjct  139  ESAKIQNILGILKLLLPLILIIILGL-VTADGGGFNLLSGEWHTFFPDGWPG-----VFA  192

Query  181  GMLNGAYSVGTPDCSSHLAEEIPRPSRNIPKAVLAQMSVGFVTGLLYMIAVFYSINDLDL  240
            G L   +S    + +++++EE+ +  RN+PKA+   + +  V  +L  IA F  + D ++
Sbjct  193  GFLGVLWSFTGFESAANVSEEVKK--RNVPKAIFIGVIIVGVLYILVNIAFFGVVPDDEI  250

Query  241  VMSNPYGFPLAEIYRQATGTRSGSLGLLIVAFLPTVITCAGCYITAGRTLWTISRDKATP  300
             +S+  G   A +  QA G + G++ ++I+  L  +       + A R L+ ++RD   P
Sbjct  251  ALSSGLGQVAA-LLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLP  309

Query  301  FSGWLGRINTRMHNPFNATLVCGVIITILACIYVGSTTAFNAFVGCFVQLSSLSYLAAIL  360
            FS +  ++N    +P  A ++  ++  IL  +++ S  A+NA +        LSYL  I+
Sbjct  310  FSRFFAKVNKF-GSPIRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPII  368

Query  361  PHVLTRRSTFQPGYFWMGRIGYVLNILASIYIIAFIVIFCFPYSMPTSAATMNYASLMTG  420
              ++ R    +          + + I   ++ +  IV   FP   P + +++NYA ++  
Sbjct  369  GLLILR---KKRPDLGRIPGRWPVAIFGILFSLFLIVALFFPPVGPATGSSLNYAIILIV  425

Query  421  GL  422
              
Sbjct  426  AF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 75.0 bits (185),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 85/456 (19%), Positives = 163/456 (36%), Gaps = 39/456 (9%)

Query  2    YNGGPAGVIYEFIAVSVCYWMVAASIAELASAMPSASGVYHWASITAGKYGRVCGFFAGF  61
               GPAG +  ++   V  ++V  S+ E+++  P + G Y +AS      G   GF  G+
Sbjct  24   GQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYAS---RFLGPSLGFATGW  80

Query  62   WNCLAWILGAASMSAILGQQTVSMYTLMHPDFVPHAWHTFISFIICTWMCCCIVLFMNRF  121
               L+WI   A       + T +   +   + VP   + ++   +       ++  +N  
Sbjct  81   NYWLSWITVLAL------ELTAASILIQFWELVPDIPYLWVWGAVFL----VLLTIIN-L  129

Query  122  LPHIGNLGMFFILAGVLITIIV--CAVMPHVNGQAYLDDKTVWRTWNNQTG--WSSNGF-  176
            +         F  A + I  I+    V   +      +D  ++R   +  G      GF 
Sbjct  130  VGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGFG  189

Query  177  -VFVAGMLNGAYSVGTPDCSSHLAEEIPRPSRNIPKAVLAQM--SVGFVTGLLYMIAVFY  233
              F++  +   ++    +     A E+  P ++IPKA+L  +     F    L  I +  
Sbjct  190  KGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLV  249

Query  234  SINDLDLVMSNPYGFPLAEIYRQATGTRSGSLGLLIVAFLPTVITCAGCYITAGRTLWTI  293
              ND  L+  +        I+ +  G    +  +  V     +        +  R L+++
Sbjct  250  PWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSL  309

Query  294  SRDKATPFSGWLGRINTRMHNPFNA---TLVCGVIITILACIYVGSTTAF----NAFVGC  346
            +RD   P   +L +++ +   P  A   ++V  ++  +LA +       F    +   G 
Sbjct  310  ARDGLAPK--FLKKVD-KRGVPLRAILVSMVISLLALLLASLNPAIVFNFLLAISGLSGL  366

Query  347  FV-QLSSLSYLAAILPHVLTRRSTFQPGYFWMGRIGYVLNILASIYIIAFIVIFCFPYSM  405
             V  L SLS+L          RS  +  +        V+  LA+I II  I        +
Sbjct  367  IVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILIIQFLYAFLPV  426

Query  406  PTSAATMNYASLMTGGLT------LFVAIWWFVRRG  435
            P         S     L       + + +   V+  
Sbjct  427  PGGPKNWGAGSFAAAYLIVLLFLIILIGVKLHVKNW  462



Lambda      K        H        a         alpha
   0.329    0.140    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00002657

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              67.0    2e-13


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 67.0 bits (164),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 47/206 (23%), Positives = 95/206 (46%), Gaps = 5/206 (2%)

Query  1    MSVGFVTGLLYMIAVFYSINDLDLVMSNPYGFPLAEIYRQATGTRSGSLGLLIVAFLPTV  60
            + +  V  +L  IA F  + D ++ +S+  G   A +  QA G + G++ ++I+  L  +
Sbjct  227  VIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAA-LLFQAVGGKWGAIIVVILLALSLL  285

Query  61   ITCAGCYITAGRTLWTISRDKATPFSGWLGRINTRMHNPFNATLVCGVIITILACIYVGS  120
                   + A R L+ ++RD   PFS +  ++N    +P  A ++  ++  IL  +++ S
Sbjct  286  GAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKF-GSPIRAIILTAILSLILLLLFLLS  344

Query  121  TTAFNAFVGCFVQLSSLSYLAAILPHVLTRRSTFQPGYFWMGRIGYVLNILASIYIIAFI  180
              A+NA +        LSYL  I+  ++ R    +          + + I   ++ +  I
Sbjct  345  PAAYNALLSLSAYGYLLSYLLPIIGLLILR---KKRPDLGRIPGRWPVAIFGILFSLFLI  401

Query  181  VIFCFPYSMPTSAATMNYASLMTGGL  206
            V   FP   P + +++NYA ++    
Sbjct  402  VALFFPPVGPATGSSLNYAIILIVAF  427



Lambda      K        H        a         alpha
   0.329    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00002656

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              154     3e-42
CDD:366028 pfam00324, AA_permease, Amino acid permease                80.4    1e-16


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 154 bits (391),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 109/449 (24%), Positives = 203/449 (45%), Gaps = 22/449 (5%)

Query  44   FSLLSICAVAVTTGNTWIAQGGSLVTAMYNGGPAGVIYEFIAVSVCYWMVAASIAELASA  103
              LLS  A+ +    + I  G  +   + +GGPA +++ +IA  +    V    AEL+SA
Sbjct  1    LGLLSAFALVI---GSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSA  57

Query  104  MPSASGVYHWASITAGKYGRVCGFFAGFWNCLAWILGAASMSAILGQQTVSMYTLMHPDF  163
            +P + G+Y +       +G+   F AG+ N  A++LG AS +++     +S    + PD 
Sbjct  58   LPRSGGIYVYLENA---FGKFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPDL  111

Query  164  VPHAWHTFISFIICTWMCCCIVLFMNRFLPHIGNLGMFFILAGVLITIIVCAVMPHVNGQ  223
            VP  W T+   I    +   I +   R    I N+     L   LI II+  +    +G 
Sbjct  112  VPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGL-VTADGG  170

Query  224  AYLDDKTVWRTWNNQTGWSSNGFVFVAGMLNGAYSVGTPDCSSHLAEEIPRPSRNIPKAV  283
             +      W T+              AG L   +S    + +++++EE+ +  RN+PKA+
Sbjct  171  GFNLLSGEWHTFFPDGWPG-----VFAGFLGVLWSFTGFESAANVSEEVKK--RNVPKAI  223

Query  284  LAQMSVGFVTGLLYMIAVFYSINDLDLVMSNPYGFPLAEIYRQATGTRSGSLGLLIVAFL  343
               + +  V  +L  IA F  + D ++ +S+  G   A +  QA G + G++ ++I+  L
Sbjct  224  FIGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAA-LLFQAVGGKWGAIIVVILLAL  282

Query  344  PTVITCAGCYITAGRTLWTISRDKATPFSGWLGRINTRMHNPFNATLVCGVIITILACIY  403
              +       + A R L+ ++RD   PFS +  ++N    +P  A ++  ++  IL  ++
Sbjct  283  SLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKF-GSPIRAIILTAILSLILLLLF  341

Query  404  VGSTTAFNAFVGCFVQLSSLSYLAAILPHVLTRRSTFQPGYFWMGRIGYVLNILASIYII  463
            + S  A+NA +        LSYL  I+  ++ R    +          + + I   ++ +
Sbjct  342  LLSPAAYNALLSLSAYGYLLSYLLPIIGLLILR---KKRPDLGRIPGRWPVAIFGILFSL  398

Query  464  AFIVIFCFPYSMPTSAATMNYASLMTGGL  492
              IV   FP   P + +++NYA ++    
Sbjct  399  FLIVALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 80.4 bits (199),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 86/459 (19%), Positives = 165/459 (36%), Gaps = 41/459 (9%)

Query  70   AMYNGGPAGVIYEFIAVSVCYWMVAASIAELASAMPSASGVYHWASITAGKYGRVCGFFA  129
             +   GPAG +  ++   V  ++V  S+ E+++  P + G Y +AS      G   GF  
Sbjct  22   VLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYAS---RFLGPSLGFAT  78

Query  130  GFWNCLAWILGAASMSAILGQQTVSMYTLMHPDFVPHAWHTFISFIICTWMCCCIVLFMN  189
            G+   L+WI   A       + T +   +   + VP   + ++   +       ++  +N
Sbjct  79   GWNYWLSWITVLAL------ELTAASILIQFWELVPDIPYLWVWGAVFL----VLLTIIN  128

Query  190  RFLPHIGNLGMF-FILAGVLITIIV--CAVMPHVNGQAYLDDKTVWRTWNNQTG--WSSN  244
                 +   G   F  A + I  I+    V   +      +D  ++R   +  G      
Sbjct  129  LVG--VKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPP  186

Query  245  GF--VFVAGMLNGAYSVGTPDCSSHLAEEIPRPSRNIPKAVLAQM--SVGFVTGLLYMIA  300
            GF   F++  +   ++    +     A E+  P ++IPKA+L  +     F    L  I 
Sbjct  187  GFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIG  246

Query  301  VFYSINDLDLVMSNPYGFPLAEIYRQATGTRSGSLGLLIVAFLPTVITCAGCYITAGRTL  360
            +    ND  L+  +        I+ +  G    +  +  V     +        +  R L
Sbjct  247  LLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRML  306

Query  361  WTISRDKATPFSGWLGRINTRMHNPFNA---TLVCGVIITILACIYVGSTTAF----NAF  413
            ++++RD   P   +L +++ +   P  A   ++V  ++  +LA +       F    +  
Sbjct  307  YSLARDGLAPK--FLKKVD-KRGVPLRAILVSMVISLLALLLASLNPAIVFNFLLAISGL  363

Query  414  VGCFV-QLSSLSYLAAILPHVLTRRSTFQPGYFWMGRIGYVLNILASIYIIAFIVIFCFP  472
             G  V  L SLS+L          RS  +  +        V+  LA+I II  I      
Sbjct  364  SGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILIIQFLYAF  423

Query  473  YSMPTSAATMNYASLMTGGLT------LFVAIWWFVRRG  505
              +P         S     L       + + +   V+  
Sbjct  424  LPVPGGPKNWGAGSFAAAYLIVLLFLIILIGVKLHVKNW  462



Lambda      K        H        a         alpha
   0.326    0.137    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0745    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00002658

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              143     3e-38
CDD:366028 pfam00324, AA_permease, Amino acid permease                75.4    5e-15


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 143 bits (362),  Expect = 3e-38, Method: Composition-based stats.
 Identities = 99/409 (24%), Positives = 183/409 (45%), Gaps = 19/409 (5%)

Query  70   IAVSVCYWMVAASIAELASAMPSASGVYHWASITAGKYGRVCGFFAGFWNCLAWILGAAS  129
            IA  +    V    AEL+SA+P + G+Y +       +G+   F AG+ N  A++LG AS
Sbjct  38   IAAIIFSLAVGLVYAELSSALPRSGGIYVYLENA---FGKFVAFLAGWSNWFAYVLGLAS  94

Query  130  MSAILGQQTVSMYTLMHPDFVPHAWHTFISFIICTWMCCCIVLFMNRFLPHIGNLGMFFI  189
             +++     +S    + PD VP  W T+   I    +   I +   R    I N+     
Sbjct  95   SASVAASYLLS---ALGPDLVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILK  151

Query  190  LAGVLITIIVCAVMPHVNGQAYLDDKTVWRTWNNQTGWSSNGFVFVAGMLNGAYSVGTPD  249
            L   LI II+  +    +G  +      W T+              AG L   +S    +
Sbjct  152  LLLPLILIIILGL-VTADGGGFNLLSGEWHTFFPDGWPG-----VFAGFLGVLWSFTGFE  205

Query  250  CSSHLAEEIPRPSRNIPKAVLAQMSVGFVTGLLYMIAVFYSINDLDLVMSNPYGFPLAEI  309
             +++++EE+ +  RN+PKA+   + +  V  +L  IA F  + D ++ +S+  G   A +
Sbjct  206  SAANVSEEVKK--RNVPKAIFIGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAA-L  262

Query  310  YRQATGTRSGSLGLLIVAFLPTVITCAGCYITAGRTLWTISRDKATPFSGWLGRINTRMH  369
              QA G + G++ ++I+  L  +       + A R L+ ++RD   PFS +  ++N    
Sbjct  263  LFQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKF-G  321

Query  370  NPFNATLVCGVIITILACIYVGSTTAFNAFVGCFVQLSSLSYLAAILPHVLTRRSTFQPG  429
            +P  A ++  ++  IL  +++ S  A+NA +        LSYL  I+  ++ R    +  
Sbjct  322  SPIRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLILR---KKRP  378

Query  430  YFWMGRIGYVLNILASIYIIAFIVIFCFPYSMPTSAATMNYASLMTGGL  478
                    + + I   ++ +  IV   FP   P + +++NYA ++    
Sbjct  379  DLGRIPGRWPVAIFGILFSLFLIVALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 75.4 bits (186),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 84/476 (18%), Positives = 165/476 (35%), Gaps = 46/476 (10%)

Query  44   FSLLSICAVAVTTGNTWIAQGGSLISIAVS-----VCYWMVAASIAELASAMPSASGVYH  98
             +L  +    +  G+  +          +      V  ++V  S+ E+++  P + G Y 
Sbjct  5    IALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYT  64

Query  99   WASITAGKYGRVCGFFAGFWNCLAWILGAASMSAILGQQTVSMYTLMHPDFVPHAWHTFI  158
            +AS      G   GF  G+   L+WI   A       + T +   +   + VP   + ++
Sbjct  65   YAS---RFLGPSLGFATGWNYWLSWITVLAL------ELTAASILIQFWELVPDIPYLWV  115

Query  159  SFIICTWMCCCIVLFMNRFLPHIGNLGMF-FILAGVLITIIV--CAVMPHVNGQAYLDDK  215
               +       ++  +N     +   G   F  A + I  I+    V   +      +D 
Sbjct  116  WGAVFL----VLLTIINLVG--VKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDG  169

Query  216  TVWRTWNNQTG--WSSNGF--VFVAGMLNGAYSVGTPDCSSHLAEEIPRPSRNIPKAVLA  271
             ++R   +  G      GF   F++  +   ++    +     A E+  P ++IPKA+L 
Sbjct  170  AIFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQ  229

Query  272  QM--SVGFVTGLLYMIAVFYSINDLDLVMSNPYGFPLAEIYRQATGTRSGSLGLLIVAFL  329
             +     F    L  I +    ND  L+  +        I+ +  G    +  +  V   
Sbjct  230  VIWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILT  289

Query  330  PTVITCAGCYITAGRTLWTISRDKATPFSGWLGRINTRMHNPFNA---TLVCGVIITILA  386
              +        +  R L++++RD   P   +L +++ +   P  A   ++V  ++  +LA
Sbjct  290  AALSAANSSLYSGSRMLYSLARDGLAPK--FLKKVD-KRGVPLRAILVSMVISLLALLLA  346

Query  387  CIYVGSTTAF----NAFVGCFV-QLSSLSYLAAILPHVLTRRSTFQPGYFWMGRIGYVLN  441
             +       F    +   G  V  L SLS+L          RS  +  +        V+ 
Sbjct  347  SLNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVIL  406

Query  442  ILASIYIIAFIVIFCFPYSMPTSAATMNYASLMTGGLT------LFVAIWWFVRRG  491
             LA+I II  I        +P         S     L       + + +   V+  
Sbjct  407  GLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILIGVKLHVKNW  462



Lambda      K        H        a         alpha
   0.326    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 635907720


Query= TCONS_00002659

Length=434
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              133     3e-35
CDD:366028 pfam00324, AA_permease, Amino acid permease                64.3    1e-11


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 133 bits (337),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 97/401 (24%), Positives = 180/401 (45%), Gaps = 19/401 (5%)

Query  1    MVAASIAELASAMPSASGVYHWASITAGKYGRVCGFFAGFWNCLAWILGAASMSAILGQQ  60
             V    AEL+SA+P + G+Y +       +G+   F AG+ N  A++LG AS +++    
Sbjct  46   AVGLVYAELSSALPRSGGIYVYLENA---FGKFVAFLAGWSNWFAYVLGLASSASVAASY  102

Query  61   TVSMYTLMHPDFVPHAWHTFISFIICTWMCCCIVLFMNRFLPHIGNLGMFFILAGVLITI  120
             +S    + PD VP  W T+   I    +   I +   R    I N+     L   LI I
Sbjct  103  LLS---ALGPDLVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILI  159

Query  121  IVCAVMPHVNGQAYLDDKTVWRTWNNQTGWSSNGFVFVAGMLNGAYSVGTPDCSSHLAEE  180
            I+  +    +G  +      W T+              AG L   +S    + +++++EE
Sbjct  160  IILGL-VTADGGGFNLLSGEWHTFFPDGWPG-----VFAGFLGVLWSFTGFESAANVSEE  213

Query  181  IPRPSRNIPKAVLAQMSVGFVTGLLYMIAVFYSINDLDLVMSNPYGFPLAEIYRQATGTR  240
            + +  RN+PKA+   + +  V  +L  IA F  + D ++ +S+  G   A +  QA G +
Sbjct  214  VKK--RNVPKAIFIGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAA-LLFQAVGGK  270

Query  241  SGSLGLLIVAFLPTVITCAGCYITAGRTLWTISRDKATPFSGWLGRINTRMHNPFNATLV  300
             G++ ++I+  L  +       + A R L+ ++RD   PFS +  ++N    +P  A ++
Sbjct  271  WGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKF-GSPIRAIIL  329

Query  301  CGVIITILACIYVGSTTAFNAFVGCFVQLSSLSYLAAILPHVLTRRSTFQPGYFWMGRIG  360
              ++  IL  +++ S  A+NA +        LSYL  I+  ++ R    +          
Sbjct  330  TAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLILR---KKRPDLGRIPGR  386

Query  361  YVLNILASIYIIAFIVIFCFPYSMPTSAATMNYASLMTGGL  401
            + + I   ++ +  IV   FP   P + +++NYA ++    
Sbjct  387  WPVAIFGILFSLFLIVALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 64.3 bits (157),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 81/437 (19%), Positives = 155/437 (35%), Gaps = 41/437 (9%)

Query  1    MVAASIAELASAMPSASGVYHWASITAGKYGRVCGFFAGFWNCLAWILGAASMSAILGQQ  60
            +V  S+ E+++  P + G Y +AS      G   GF  G+   L+WI   A       + 
Sbjct  44   LVMLSLGEISTNGPVSGGFYTYAS---RFLGPSLGFATGWNYWLSWITVLAL------EL  94

Query  61   TVSMYTLMHPDFVPHAWHTFISFIICTWMCCCIVLFMNRFLPHIGNLGMF-FILAGVLIT  119
            T +   +   + VP   + ++   +       ++  +N     +   G   F  A + I 
Sbjct  95   TAASILIQFWELVPDIPYLWVWGAVFL----VLLTIINLVG--VKWYGEAEFWFALIKII  148

Query  120  IIV--CAVMPHVNGQAYLDDKTVWRTWNNQTG--WSSNGF--VFVAGMLNGAYSVGTPDC  173
             I+    V   +      +D  ++R   +  G      GF   F++  +   ++    + 
Sbjct  149  AIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIEL  208

Query  174  SSHLAEEIPRPSRNIPKAVLAQM--SVGFVTGLLYMIAVFYSINDLDLVMSNPYGFPLAE  231
                A E+  P ++IPKA+L  +     F    L  I +    ND  L+  +        
Sbjct  209  VGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFV  268

Query  232  IYRQATGTRSGSLGLLIVAFLPTVITCAGCYITAGRTLWTISRDKATPFSGWLGRINTRM  291
            I+ +  G    +  +  V     +        +  R L++++RD   P   +L +++ + 
Sbjct  269  IFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLARDGLAPK--FLKKVD-KR  325

Query  292  HNPFNA---TLVCGVIITILACIYVGSTTAF----NAFVGCFV-QLSSLSYLAAILPHVL  343
              P  A   ++V  ++  +LA +       F    +   G  V  L SLS+L        
Sbjct  326  GVPLRAILVSMVISLLALLLASLNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKY  385

Query  344  TRRSTFQPGYFWMGRIGYVLNILASIYIIAFIVIFCFPYSMPTSAATMNYASLMTGGLT-  402
              RS  +  +        V+  LA+I II  I        +P         S     L  
Sbjct  386  QGRSIDELPFKAPLGPLGVILGLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFAAAYLIV  445

Query  403  -----LFVAIWWFVRRG  414
                 + + +   V+  
Sbjct  446  LLFLIILIGVKLHVKNW  462



Lambda      K        H        a         alpha
   0.329    0.140    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 527594176


Query= TCONS_00007888

Length=860
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460663 pfam02724, CDC45, CDC45-like protein. CDC45 is an esse...  742     0.0  


>CDD:460663 pfam02724, CDC45, CDC45-like protein.  CDC45 is an essential 
gene required for initiation of DNA replication in S. cerevisiae, 
forming a complex with MCM5/CDC46. homologs of CDC45 have 
been identified in human, mouse and smut fungus, among others.
Length=529

 Score = 742 bits (1917),  Expect = 0.0, Method: Composition-based stats.
 Identities = 321/834 (38%), Positives = 391/834 (47%), Gaps = 311/834 (37%)

Query  26   VLVLVALEPDALCACRILTALLKRDYIPHKIQPVAGYGDLARAGEELVKPMQTHHGGSGG  85
            VL+LVAL+ DALCACRILT+LLKRD IPHKI PV+GY +L RAGEELV P          
Sbjct  1    VLILVALDVDALCACRILTSLLKRDLIPHKIVPVSGYSELERAGEELVAP----------  50

Query  86   VVVCLGVGGLVDLNEMLCLS--SPDDEVEDM----GGVEVWVFDSRRPWNLSNVFGGEAV  139
                       ++  ++ ++     D +E++     GV V+V DS RPWNL N+FGG   
Sbjct  51   ----------GEIRSVILINCGGMVD-LEELLGLPPGVTVYVIDSHRPWNLDNLFGGS--  97

Query  140  AAASADGGDAASRRNTRGVDKGCITPSYKSGAGGIVVYDDGDIEEEMSAEREAYCALLEM  199
                                             GI+V+DDGDIEE++  EREAY AL E+
Sbjct  98   --------------------------------DGIIVFDDGDIEEDLQEEREAYEALEEL  125

Query  200  PEVDEDEEDIDGSGSEDDEEHPSSSGSKKRKSWSGREDEDESDENDGPPRQRRRSNSGSS  259
            P                                                           
Sbjct  126  P-----------------------------------------------------------  126

Query  260  IASSPSRRPRDEHNSSNSSRSVTPGSDSPSPALPRQPSARSMRRRLIRLKRKHEKVLQKY  319
                                                                       Y
Sbjct  127  -----------------------------------------------------------Y  127

Query  320  YSTGTSYSEPISSLVYSLASELGREDNDLLWLAIVGVSSLELSGRTMSGVGISNPSESGG  379
            YS GTSY E  SSL+YSLASELGREDNDLLWLAIVG++S  L GR               
Sbjct  128  YSQGTSYGESASSLMYSLASELGREDNDLLWLAIVGLTSQYLHGRISR------------  175

Query  380  SAGWGGERGERIRQILRDEVHRLNPPDPYERDRDIRGEINGVIPTTAKSPTDKSIRLSPE  439
                  ER +R+R +L+DEV RLNPP              GVIPTTA+SP D SIRLSPE
Sbjct  176  ------ERYDRLRPLLQDEVRRLNPP--------------GVIPTTARSPDDTSIRLSPE  215

Query  440  PRFILIRHWSLYESMLHSPYLASRLHVWTENGRKRLHKLLAKMGISLSQCHQNYTHMDME  499
             RF+L+RHWSLY+SM HS Y+AS+L +W+ENGRKRLHKLLAKMGISL+Q  Q YTHMDM+
Sbjct  216  YRFMLLRHWSLYDSMYHSSYVASKLGLWSENGRKRLHKLLAKMGISLAQAQQKYTHMDMD  275

Query  500  LKRVLRQRLLKYAPMYGLEGLVPPDASGHVSSREGWGFVRCWGWKACLSATDVGVIIGAI  559
            LKR LR++L K+AP YGL+ LV               FVR +G++  LSA+DV   + A+
Sbjct  276  LKRELREKLEKFAPEYGLDDLVY------------PSFVRSYGYRGPLSASDVVEALTAL  323

Query  560  LEVGPEEAPGATWDTKRLSRPKGTNEGNGADGSTESDLSSLLPRFWSAYDALSLTSESPT  619
            LEVG           +   R    +E   A    E D    +  FW AYDAL     +  
Sbjct  324  LEVGKGVRLE---VEEEGGRNASEDEEEDAAEDEEKDEEWWVSNFWEAYDALDPK--NID  378

Query  620  LLLKALPLAQHLHRAILRTGTSLLSKHQIRHLRAFRIAVVKDGPDVKLFTNPGALTKLAL  679
            LL K LPLAQ L RAI+RTGTSL+ K  IRHLRAFR+AV+KDGPD+ LFT+P ALTKLAL
Sbjct  379  LLRKGLPLAQSLQRAIVRTGTSLIEKKLIRHLRAFRLAVLKDGPDLALFTHPLALTKLAL  438

Query  680  WIAEAIRVQERERGDSVKIGKKRAAGTPLVLAGLDEDRGLYVVVGTGGGGGVIDYAAMHK  739
            W+ EA+R +E+E         K A   PLVLA LDE RG Y+V              +  
Sbjct  439  WLMEALREREKE---------KGAKLLPLVLASLDEARGTYLV------------VGVSG  477

Query  740  RQEERRKKKEAKEKKQREREERRAQRAAERAQRGNDDDDEAEETEEESESSSDSESESED  799
            R  E                                                        
Sbjct  478  RAPEG-------------------------------------------------------  482

Query  800  ELDMRGNKHLLRNRFGIAFQEVVQETNTRVRIDSFEHCVVEVQKEDLGGFLEAL  853
                     + +NRFG+AFQE  +ET  RVR DSFE  V+EV+KEDLG FLE L
Sbjct  483  -------GDVRKNRFGLAFQEAAEETGARVRHDSFESSVIEVRKEDLGPFLEKL  529



Lambda      K        H        a         alpha
   0.314    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1098168210


Query= TCONS_00007889

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461486 pfam04928, PAP_central, Poly(A) polymerase central dom...  181     2e-58


>CDD:461486 pfam04928, PAP_central, Poly(A) polymerase central domain.  The 
central domain of Poly(A) polymerase shares structural similarity 
with the allosteric activity domain of ribonucleotide 
reductase R1, which comprises a four-helix bundle and a three-stranded 
mixed beta- sheet. Even though the two enzymes 
bind ATP, the ATP-recognition motifs are different.
Length=344

 Score = 181 bits (462),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 63/100 (63%), Positives = 78/100 (78%), Gaps = 0/100 (0%)

Query  1    MAPPGAIEKMTPVPDAFVPIIKLELSGISIDLIFARLIVSSVPLNLDLKNNDYLRGLDEK  60
            +     + ++T VPDAFVP+IK + SGISIDL+FARL + SVP +LDL +++ LR LDEK
Sbjct  117  LRERPEVTELTAVPDAFVPVIKFKFSGISIDLLFARLALPSVPDDLDLSDDNLLRNLDEK  176

Query  61   EVRSLNGTRVTDEILELVPQQKTFRLALRAIKLWAQRKDI  100
             VRSLNG RVTDEIL LVP  +TFR ALRAIKLWA+R+ I
Sbjct  177  CVRSLNGCRVTDEILRLVPNVETFRTALRAIKLWAKRRGI  216



Lambda      K        H        a         alpha
   0.321    0.139    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00002660

Length=560
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460663 pfam02724, CDC45, CDC45-like protein. CDC45 is an esse...  624     0.0  


>CDD:460663 pfam02724, CDC45, CDC45-like protein.  CDC45 is an essential 
gene required for initiation of DNA replication in S. cerevisiae, 
forming a complex with MCM5/CDC46. homologs of CDC45 have 
been identified in human, mouse and smut fungus, among others.
Length=529

 Score = 624 bits (1613),  Expect = 0.0, Method: Composition-based stats.
 Identities = 246/535 (46%), Positives = 295/535 (55%), Gaps = 132/535 (25%)

Query  19   YYSTGTSYSEPISSLVYSLASELGREDNDLLWLAIVGVSSLELSGRTMSGVGISNPSESG  78
            YYS GTSY E  SSL+YSLASELGREDNDLLWLAIVG++S  L GR              
Sbjct  127  YYSQGTSYGESASSLMYSLASELGREDNDLLWLAIVGLTSQYLHGRISR-----------  175

Query  79   GSAGWGGERGERIRQILRDEVHRLNPPDPYERDRDIRGEINGVIPTTAKSPTDKSIRLSP  138
                   ER +R+R +L+DEV RLNPP              GVIPTTA+SP D SIRLSP
Sbjct  176  -------ERYDRLRPLLQDEVRRLNPP--------------GVIPTTARSPDDTSIRLSP  214

Query  139  EPRFILIRHWSLYESMLHSPYLASRLHVWTENGRKRLHKLLAKMGISLSQCHQNYTHMDM  198
            E RF+L+RHWSLY+SM HS Y+AS+L +W+ENGRKRLHKLLAKMGISL+Q  Q YTHMDM
Sbjct  215  EYRFMLLRHWSLYDSMYHSSYVASKLGLWSENGRKRLHKLLAKMGISLAQAQQKYTHMDM  274

Query  199  ELKRVLRQRLLKYAPMYGLEGLVPPDASGHVSSREGWGFVRCWGWKACLSATDVGVIIGA  258
            +LKR LR++L K+AP YGL+ LV               FVR +G++  LSA+DV   + A
Sbjct  275  DLKRELREKLEKFAPEYGLDDLVY------------PSFVRSYGYRGPLSASDVVEALTA  322

Query  259  ILEVGPEEAPGATWDTKRLSRPKGTNEGNGADGSTESDLSSLLPRFWSAYDALSLTSESP  318
            +LEVG           +   R    +E   A    E D    +  FW AYDAL     + 
Sbjct  323  LLEVGKGVRLE---VEEEGGRNASEDEEEDAAEDEEKDEEWWVSNFWEAYDALDPK--NI  377

Query  319  TLLLKALPLAQHLHRAILRTGTSLLSKHQIRHLRAFRIAVVKDGPDVKLFTNPGALTKLA  378
             LL K LPLAQ L RAI+RTGTSL+ K  IRHLRAFR+AV+KDGPD+ LFT+P ALTKLA
Sbjct  378  DLLRKGLPLAQSLQRAIVRTGTSLIEKKLIRHLRAFRLAVLKDGPDLALFTHPLALTKLA  437

Query  379  LWIAEAIRVQERERGDSVKIGKKRAAGTPLVLAGLDEDRGLYVVVGTGGGGGVIDYAAMH  438
            LW+ EA+R +E+E         K A   PLVLA LDE RG Y+V              + 
Sbjct  438  LWLMEALREREKE---------KGAKLLPLVLASLDEARGTYLV------------VGVS  476

Query  439  KRQEERRKKKEAKEKKQREREERRAQRAAERAQRGNDDDDEAEETEEESESSSDSESESE  498
             R  E                                                       
Sbjct  477  GRAPEG------------------------------------------------------  482

Query  499  DELDMRGNKHLLRNRFGIAFQEVVQETNTRVRIDSFEHCVVEVQKEDLGGFLEAL  553
                      + +NRFG+AFQE  +ET  RVR DSFE  V+EV+KEDLG FLE L
Sbjct  483  --------GDVRKNRFGLAFQEAAEETGARVRHDSFESSVIEVRKEDLGPFLEKL  529



Lambda      K        H        a         alpha
   0.315    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 699392304


Query= TCONS_00002661

Length=860
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460663 pfam02724, CDC45, CDC45-like protein. CDC45 is an esse...  742     0.0  


>CDD:460663 pfam02724, CDC45, CDC45-like protein.  CDC45 is an essential 
gene required for initiation of DNA replication in S. cerevisiae, 
forming a complex with MCM5/CDC46. homologs of CDC45 have 
been identified in human, mouse and smut fungus, among others.
Length=529

 Score = 742 bits (1917),  Expect = 0.0, Method: Composition-based stats.
 Identities = 321/834 (38%), Positives = 391/834 (47%), Gaps = 311/834 (37%)

Query  26   VLVLVALEPDALCACRILTALLKRDYIPHKIQPVAGYGDLARAGEELVKPMQTHHGGSGG  85
            VL+LVAL+ DALCACRILT+LLKRD IPHKI PV+GY +L RAGEELV P          
Sbjct  1    VLILVALDVDALCACRILTSLLKRDLIPHKIVPVSGYSELERAGEELVAP----------  50

Query  86   VVVCLGVGGLVDLNEMLCLS--SPDDEVEDM----GGVEVWVFDSRRPWNLSNVFGGEAV  139
                       ++  ++ ++     D +E++     GV V+V DS RPWNL N+FGG   
Sbjct  51   ----------GEIRSVILINCGGMVD-LEELLGLPPGVTVYVIDSHRPWNLDNLFGGS--  97

Query  140  AAASADGGDAASRRNTRGVDKGCITPSYKSGAGGIVVYDDGDIEEEMSAEREAYCALLEM  199
                                             GI+V+DDGDIEE++  EREAY AL E+
Sbjct  98   --------------------------------DGIIVFDDGDIEEDLQEEREAYEALEEL  125

Query  200  PEVDEDEEDIDGSGSEDDEEHPSSSGSKKRKSWSGREDEDESDENDGPPRQRRRSNSGSS  259
            P                                                           
Sbjct  126  P-----------------------------------------------------------  126

Query  260  IASSPSRRPRDEHNSSNSSRSVTPGSDSPSPALPRQPSARSMRRRLIRLKRKHEKVLQKY  319
                                                                       Y
Sbjct  127  -----------------------------------------------------------Y  127

Query  320  YSTGTSYSEPISSLVYSLASELGREDNDLLWLAIVGVSSLELSGRTMSGVGISNPSESGG  379
            YS GTSY E  SSL+YSLASELGREDNDLLWLAIVG++S  L GR               
Sbjct  128  YSQGTSYGESASSLMYSLASELGREDNDLLWLAIVGLTSQYLHGRISR------------  175

Query  380  SAGWGGERGERIRQILRDEVHRLNPPDPYERDRDIRGEINGVIPTTAKSPTDKSIRLSPE  439
                  ER +R+R +L+DEV RLNPP              GVIPTTA+SP D SIRLSPE
Sbjct  176  ------ERYDRLRPLLQDEVRRLNPP--------------GVIPTTARSPDDTSIRLSPE  215

Query  440  PRFILIRHWSLYESMLHSPYLASRLHVWTENGRKRLHKLLAKMGISLSQCHQNYTHMDME  499
             RF+L+RHWSLY+SM HS Y+AS+L +W+ENGRKRLHKLLAKMGISL+Q  Q YTHMDM+
Sbjct  216  YRFMLLRHWSLYDSMYHSSYVASKLGLWSENGRKRLHKLLAKMGISLAQAQQKYTHMDMD  275

Query  500  LKRVLRQRLLKYAPMYGLEGLVPPDASGHVSSREGWGFVRCWGWKACLSATDVGVIIGAI  559
            LKR LR++L K+AP YGL+ LV               FVR +G++  LSA+DV   + A+
Sbjct  276  LKRELREKLEKFAPEYGLDDLVY------------PSFVRSYGYRGPLSASDVVEALTAL  323

Query  560  LEVGPEEAPGATWDTKRLSRPKGTNEGNGADGSTESDLSSLLPRFWSAYDALSLTSESPT  619
            LEVG           +   R    +E   A    E D    +  FW AYDAL     +  
Sbjct  324  LEVGKGVRLE---VEEEGGRNASEDEEEDAAEDEEKDEEWWVSNFWEAYDALDPK--NID  378

Query  620  LLLKALPLAQHLHRAILRTGTSLLSKHQIRHLRAFRIAVVKDGPDVKLFTNPGALTKLAL  679
            LL K LPLAQ L RAI+RTGTSL+ K  IRHLRAFR+AV+KDGPD+ LFT+P ALTKLAL
Sbjct  379  LLRKGLPLAQSLQRAIVRTGTSLIEKKLIRHLRAFRLAVLKDGPDLALFTHPLALTKLAL  438

Query  680  WIAEAIRVQERERGDSVKIGKKRAAGTPLVLAGLDEDRGLYVVVGTGGGGGVIDYAAMHK  739
            W+ EA+R +E+E         K A   PLVLA LDE RG Y+V              +  
Sbjct  439  WLMEALREREKE---------KGAKLLPLVLASLDEARGTYLV------------VGVSG  477

Query  740  RQEERRKKKEAKEKKQREREERRAQRAAERAQRGNDDDDEAEETEEESESSSDSESESED  799
            R  E                                                        
Sbjct  478  RAPEG-------------------------------------------------------  482

Query  800  ELDMRGNKHLLRNRFGIAFQEVVQETNTRVRIDSFEHCVVEVQKEDLGGFLEAL  853
                     + +NRFG+AFQE  +ET  RVR DSFE  V+EV+KEDLG FLE L
Sbjct  483  -------GDVRKNRFGLAFQEAAEETGARVRHDSFESSVIEVRKEDLGPFLEKL  529



Lambda      K        H        a         alpha
   0.314    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1098168210


Query= TCONS_00007890

Length=860
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460663 pfam02724, CDC45, CDC45-like protein. CDC45 is an esse...  742     0.0  


>CDD:460663 pfam02724, CDC45, CDC45-like protein.  CDC45 is an essential 
gene required for initiation of DNA replication in S. cerevisiae, 
forming a complex with MCM5/CDC46. homologs of CDC45 have 
been identified in human, mouse and smut fungus, among others.
Length=529

 Score = 742 bits (1917),  Expect = 0.0, Method: Composition-based stats.
 Identities = 321/834 (38%), Positives = 391/834 (47%), Gaps = 311/834 (37%)

Query  26   VLVLVALEPDALCACRILTALLKRDYIPHKIQPVAGYGDLARAGEELVKPMQTHHGGSGG  85
            VL+LVAL+ DALCACRILT+LLKRD IPHKI PV+GY +L RAGEELV P          
Sbjct  1    VLILVALDVDALCACRILTSLLKRDLIPHKIVPVSGYSELERAGEELVAP----------  50

Query  86   VVVCLGVGGLVDLNEMLCLS--SPDDEVEDM----GGVEVWVFDSRRPWNLSNVFGGEAV  139
                       ++  ++ ++     D +E++     GV V+V DS RPWNL N+FGG   
Sbjct  51   ----------GEIRSVILINCGGMVD-LEELLGLPPGVTVYVIDSHRPWNLDNLFGGS--  97

Query  140  AAASADGGDAASRRNTRGVDKGCITPSYKSGAGGIVVYDDGDIEEEMSAEREAYCALLEM  199
                                             GI+V+DDGDIEE++  EREAY AL E+
Sbjct  98   --------------------------------DGIIVFDDGDIEEDLQEEREAYEALEEL  125

Query  200  PEVDEDEEDIDGSGSEDDEEHPSSSGSKKRKSWSGREDEDESDENDGPPRQRRRSNSGSS  259
            P                                                           
Sbjct  126  P-----------------------------------------------------------  126

Query  260  IASSPSRRPRDEHNSSNSSRSVTPGSDSPSPALPRQPSARSMRRRLIRLKRKHEKVLQKY  319
                                                                       Y
Sbjct  127  -----------------------------------------------------------Y  127

Query  320  YSTGTSYSEPISSLVYSLASELGREDNDLLWLAIVGVSSLELSGRTMSGVGISNPSESGG  379
            YS GTSY E  SSL+YSLASELGREDNDLLWLAIVG++S  L GR               
Sbjct  128  YSQGTSYGESASSLMYSLASELGREDNDLLWLAIVGLTSQYLHGRISR------------  175

Query  380  SAGWGGERGERIRQILRDEVHRLNPPDPYERDRDIRGEINGVIPTTAKSPTDKSIRLSPE  439
                  ER +R+R +L+DEV RLNPP              GVIPTTA+SP D SIRLSPE
Sbjct  176  ------ERYDRLRPLLQDEVRRLNPP--------------GVIPTTARSPDDTSIRLSPE  215

Query  440  PRFILIRHWSLYESMLHSPYLASRLHVWTENGRKRLHKLLAKMGISLSQCHQNYTHMDME  499
             RF+L+RHWSLY+SM HS Y+AS+L +W+ENGRKRLHKLLAKMGISL+Q  Q YTHMDM+
Sbjct  216  YRFMLLRHWSLYDSMYHSSYVASKLGLWSENGRKRLHKLLAKMGISLAQAQQKYTHMDMD  275

Query  500  LKRVLRQRLLKYAPMYGLEGLVPPDASGHVSSREGWGFVRCWGWKACLSATDVGVIIGAI  559
            LKR LR++L K+AP YGL+ LV               FVR +G++  LSA+DV   + A+
Sbjct  276  LKRELREKLEKFAPEYGLDDLVY------------PSFVRSYGYRGPLSASDVVEALTAL  323

Query  560  LEVGPEEAPGATWDTKRLSRPKGTNEGNGADGSTESDLSSLLPRFWSAYDALSLTSESPT  619
            LEVG           +   R    +E   A    E D    +  FW AYDAL     +  
Sbjct  324  LEVGKGVRLE---VEEEGGRNASEDEEEDAAEDEEKDEEWWVSNFWEAYDALDPK--NID  378

Query  620  LLLKALPLAQHLHRAILRTGTSLLSKHQIRHLRAFRIAVVKDGPDVKLFTNPGALTKLAL  679
            LL K LPLAQ L RAI+RTGTSL+ K  IRHLRAFR+AV+KDGPD+ LFT+P ALTKLAL
Sbjct  379  LLRKGLPLAQSLQRAIVRTGTSLIEKKLIRHLRAFRLAVLKDGPDLALFTHPLALTKLAL  438

Query  680  WIAEAIRVQERERGDSVKIGKKRAAGTPLVLAGLDEDRGLYVVVGTGGGGGVIDYAAMHK  739
            W+ EA+R +E+E         K A   PLVLA LDE RG Y+V              +  
Sbjct  439  WLMEALREREKE---------KGAKLLPLVLASLDEARGTYLV------------VGVSG  477

Query  740  RQEERRKKKEAKEKKQREREERRAQRAAERAQRGNDDDDEAEETEEESESSSDSESESED  799
            R  E                                                        
Sbjct  478  RAPEG-------------------------------------------------------  482

Query  800  ELDMRGNKHLLRNRFGIAFQEVVQETNTRVRIDSFEHCVVEVQKEDLGGFLEAL  853
                     + +NRFG+AFQE  +ET  RVR DSFE  V+EV+KEDLG FLE L
Sbjct  483  -------GDVRKNRFGLAFQEAAEETGARVRHDSFESSVIEVRKEDLGPFLEKL  529



Lambda      K        H        a         alpha
   0.314    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1098168210


Query= TCONS_00002662

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00007891

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461486 pfam04928, PAP_central, Poly(A) polymerase central dom...  181     2e-58


>CDD:461486 pfam04928, PAP_central, Poly(A) polymerase central domain.  The 
central domain of Poly(A) polymerase shares structural similarity 
with the allosteric activity domain of ribonucleotide 
reductase R1, which comprises a four-helix bundle and a three-stranded 
mixed beta- sheet. Even though the two enzymes 
bind ATP, the ATP-recognition motifs are different.
Length=344

 Score = 181 bits (462),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 63/100 (63%), Positives = 78/100 (78%), Gaps = 0/100 (0%)

Query  1    MAPPGAIEKMTPVPDAFVPIIKLELSGISIDLIFARLIVSSVPLNLDLKNNDYLRGLDEK  60
            +     + ++T VPDAFVP+IK + SGISIDL+FARL + SVP +LDL +++ LR LDEK
Sbjct  117  LRERPEVTELTAVPDAFVPVIKFKFSGISIDLLFARLALPSVPDDLDLSDDNLLRNLDEK  176

Query  61   EVRSLNGTRVTDEILELVPQQKTFRLALRAIKLWAQRKDI  100
             VRSLNG RVTDEIL LVP  +TFR ALRAIKLWA+R+ I
Sbjct  177  CVRSLNGCRVTDEILRLVPNVETFRTALRAIKLWAKRRGI  216



Lambda      K        H        a         alpha
   0.321    0.139    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00002663

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462065 pfam07005, DUF1537, Putative sugar-binding N-terminal ...  210     4e-66
CDD:465337 pfam17042, DUF1357_C, Putative nucleotide-binding of s...  144     1e-41


>CDD:462065 pfam07005, DUF1537, Putative sugar-binding N-terminal domain. 
 This conserved region is found in proteins of unknown function 
in a range of Proteobacteria as well as the Gram-positive 
Oceanobacillus iheyensis. Structural analysis of the whole 
protein indicates the N- and C-termini interacting to produce 
an interacting surface into which a threonate-ADPcomplex 
is bound, suggesting that a sugar binding site is on the N-terminal 
domain here, and a nucleotide binding site is in the 
C-terminal domain (manuscript in preparation). There is a 
critical motif, DDXTG, at approximately residues 22-25.
Length=229

 Score = 210 bits (538),  Expect = 4e-66, Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 108/248 (44%), Gaps = 29/248 (12%)

Query  43   LVVLDDDPTGTQTC------HDIPVLAVWDVPTLIKEFQQDSPGFFILTNSRALPPLDAE  96
            L V+ DD TG Q        H +  L    VP   +    D     I TNSR+LPP +A 
Sbjct  1    LGVIADDFTGAQDVGVQLAKHGLRTLVFLGVPDAARLPDAD--AVVIATNSRSLPPEEAV  58

Query  97   KLIRGICENVLEAARSTSQTVD--IVLRGDSTLRGHFPLEADVAQSVFGPADAWVLAPFF  154
              +R      L+   +    +   +  R DSTLRG+   E D      G  DA V+AP F
Sbjct  59   ARVREA----LKWLAALGARLYYKVCSRFDSTLRGNIGAETDALLDALGAFDAAVVAPAF  114

Query  155  FQGGRFTINDVHYVAEGENLVPAGLTQFAKDATFGYKSSNLRDYVMEKAPGRFAPEQLHS  214
             +GGR TI  V +V    N VP   T+FA+D       S+LR  + E+            
Sbjct  115  PEGGRTTIGGVLFV----NGVPLAETEFARDPVTPMTESDLRRLLAEQTKLPVG-----L  165

Query  215  ITIEDIRTGGPDGVYKKLISFPKGG--VVIVNAAAESDMHVFVAGLLLAESKGKHFLYRT  272
            I ++ +   GP+ + + L +    G  VV+V+A  + D+ V    LL   + GK FL   
Sbjct  166  IDLDTLA-DGPEALREALAALLAQGVRVVVVDAVTDEDLAVIAEALL---ALGKRFLLVG  221

Query  273  GAAFVSSR  280
             A   ++ 
Sbjct  222  SAGLAAAL  229


>CDD:465337 pfam17042, DUF1357_C, Putative nucleotide-binding of sugar-metabolising 
enzyme.  This conserved region is found in proteins 
of unknown function in a range of Proteobacteria as well 
as the Gram-positive Oceanobacillus iheyensis. Structural analysis 
of the whole protein indicates the N- and C-termini interacting 
to produce a binding-interface in which a threonate-ADP 
complex is bound, suggesting that a sugar binding site 
is on the N-terminal domain, pfam07005, and a nucleotide binding 
site is in the C-terminal domain here (manuscript in 
preparation).
Length=166

 Score = 144 bits (366),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 65/178 (37%), Positives = 87/178 (49%), Gaps = 21/178 (12%)

Query  305  LILAGSYVPKTTAQLKVLTDTRGATGTLAIIEMDVADLIASPERAERVIRRVVQQAETHL  364
            L++ GS  PKTTAQL  L   RG       +E+DV  L+   E  E  I R + +A   L
Sbjct  1    LVVVGSCSPKTTAQLAALLAERGVVV----VELDVEALL-DEEAREEEIERALAEALAAL  55

Query  365  QSGKDTLVMTSRKLVTGRDELDSLAI-------GARVAEALVKVLQQIQVRP--RYIIAK  415
             SGKD +V TSR        LDSL         GAR++ AL ++ + +  R     ++A 
Sbjct  56   ASGKDVVVYTSRGPEDVAA-LDSLQAALGLSRAGARISAALAEIARGLLARGVRGLVVA-  113

Query  416  GGITSSDAATKGLNIKRAMIVGQAAPGVPLWRCDEPTSRHQGVPFVVFPGNVGGESTL  473
            GG TS     K L I+   ++G+ APGVPL R         G+P V+  GN G E  L
Sbjct  114  GGDTSGAVL-KALGIRGLRVLGEIAPGVPLGR----LIGAPGLPVVLKGGNFGDEDAL  166



Lambda      K        H        a         alpha
   0.318    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599678264


Query= TCONS_00007892

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00002665

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460266 pfam01613, Flavin_Reduct, Flavin reductase like domain...  83.9    8e-21


>CDD:460266 pfam01613, Flavin_Reduct, Flavin reductase like domain.  This 
is a flavin reductase family consisting of enzymes known to 
be flavin reductases as well as various oxidoreductase and 
monooxygenase components. VlmR is a flavin reductase that functions 
in a two-component enzyme system to provide isobutylamine 
N-hydroxylase with reduced flavin and may be involved 
in the synthesis of valanimycin. SnaC is a flavin reductase 
that provides reduced flavin for the oxidation of pristinamycin 
IIB to pristinamycin IIA as catalyzed by SnaA, SnaB heterodimer. 
This flavin reductase region characterized by enzymes 
of the family is present in the C-terminus of potential FMN 
proteins from Synechocystis sp. suggesting it is a flavin 
reductase domain.
Length=149

 Score = 83.9 bits (208),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 64/150 (43%), Gaps = 18/150 (12%)

Query  73   GIVPRPIALISTRSKDGKTTNLAPFSYAQVINHDPPLFTVGFVGSLEKAKDSLRNMVESG  132
               P  +A+++T        N    S    ++ DPPL  V    S+ ++  +   +  SG
Sbjct  2    RRFPTGVAVVTTDDGGEP--NGMTVSSFTSVSLDPPLVLV----SINRSSSTHDAIEASG  55

Query  133  ECVINIISEHFVEAANATAINAPYGVSEWEVSGLHQAPCSVVQAARVKESMFSIEGKLVE  192
            E V+N+++E   E A   A  +       + +G+       V A  +K ++ ++E ++V+
Sbjct  56   EFVVNVLAEDQEELARRFAGRSG----RDKFAGITWVE-GKVGAPLLKGALAALECRVVD  110

Query  193  TKEFQSRTTGKTTGTLAIIEGVRFWVRDDA  222
            T +           TL I E V   V +DA
Sbjct  111  TVDVG-------DHTLFIGEVVDVRVDEDA  133



Lambda      K        H        a         alpha
   0.315    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00002664

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460266 pfam01613, Flavin_Reduct, Flavin reductase like domain...  83.9    2e-20


>CDD:460266 pfam01613, Flavin_Reduct, Flavin reductase like domain.  This 
is a flavin reductase family consisting of enzymes known to 
be flavin reductases as well as various oxidoreductase and 
monooxygenase components. VlmR is a flavin reductase that functions 
in a two-component enzyme system to provide isobutylamine 
N-hydroxylase with reduced flavin and may be involved 
in the synthesis of valanimycin. SnaC is a flavin reductase 
that provides reduced flavin for the oxidation of pristinamycin 
IIB to pristinamycin IIA as catalyzed by SnaA, SnaB heterodimer. 
This flavin reductase region characterized by enzymes 
of the family is present in the C-terminus of potential FMN 
proteins from Synechocystis sp. suggesting it is a flavin 
reductase domain.
Length=149

 Score = 83.9 bits (208),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 64/150 (43%), Gaps = 18/150 (12%)

Query  119  GIVPRPIALISTRSKDGKTTNLAPFSYAQVINHDPPLFTVGFVGSLEKAKDSLRNMVESG  178
               P  +A+++T        N    S    ++ DPPL  V    S+ ++  +   +  SG
Sbjct  2    RRFPTGVAVVTTDDGGEP--NGMTVSSFTSVSLDPPLVLV----SINRSSSTHDAIEASG  55

Query  179  ECVINIISEHFVEAANATAINAPYGVSEWEVSGLHQAPCSVVQAARVKESMFSIEGKLVE  238
            E V+N+++E   E A   A  +       + +G+       V A  +K ++ ++E ++V+
Sbjct  56   EFVVNVLAEDQEELARRFAGRSG----RDKFAGITWVE-GKVGAPLLKGALAALECRVVD  110

Query  239  TKEFQSRTTGKTTGTLAIIEGVRFWVRDDA  268
            T +           TL I E V   V +DA
Sbjct  111  TVDVG-------DHTLFIGEVVDVRVDEDA  133



Lambda      K        H        a         alpha
   0.317    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00007893

Length=835
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  94.1    7e-22


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 94.1 bits (234),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 87/233 (37%), Gaps = 57/233 (24%)

Query  71   DLFFVHLGCSFPFLQRDRFLRDLKDK------KVDTMLVDAVCALAARFSPHPLLGPPQA  124
            DLFF +    FP L R  FLRD  +           +L+ A+ AL A FS  P     ++
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA---RS  58

Query  125  PSIDGSELETDVKNSDRGQAFAHRAMGALVDSLSCPTLSVVQACLLLA-YEQFGSNHDSG  183
             S    E    +    R     H        S    +L ++QA LLL  YE    +    
Sbjct  59   SSSLTDEAADGIHFFLRALILIHED-----FSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  184  LWMYLGIAIRMAQDLGMQKLQGLQHSYGRRGVTPSAVVSGRAGQLREEEYDQSNDAQVPL  243
             W Y G+AIR+A+ LG+ +                            +    S   ++  
Sbjct  114  -WRYHGLAIRLARSLGLHR----------------------------DPSYVSPSWKLW-  143

Query  244  SPSAEMNHSEDHRAWEREKVDTFWSIFFLDRVISSGTGRPVTLRDEEIELCFP  296
                     E+     R     FW+ F+LDR+IS   GRP  L D +I+L  P
Sbjct  144  --------IEEAELRRR----LFWACFYLDRLISLILGRPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.315    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1062280360


Query= TCONS_00007894

Length=580
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  99.1    9e-24


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 99.1 bits (247),  Expect = 9e-24, Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 87/233 (37%), Gaps = 57/233 (24%)

Query  262  DLFFVHLGCSFPFLQRDRFLRDLKDK------KVDTMLVDAVCALAARFSPHPLLGPPQA  315
            DLFF +    FP L R  FLRD  +           +L+ A+ AL A FS  P     ++
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA---RS  58

Query  316  PSIDGSELETDVKNSDRGQAFAHRAMGALVDSLSCPTLSVVQACLLLA-YEQFGSNHDSG  374
             S    E    +    R     H        S    +L ++QA LLL  YE    +    
Sbjct  59   SSSLTDEAADGIHFFLRALILIHED-----FSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  375  LWMYLGIAIRMAQDLGMQKLQGLQHSYGRRGVTPSAVVSGRAGQLREEEYDQSNDAQVPL  434
             W Y G+AIR+A+ LG+ +                            +    S   ++  
Sbjct  114  -WRYHGLAIRLARSLGLHR----------------------------DPSYVSPSWKLW-  143

Query  435  SPSAEMNHSEDHRAWEREKVDTFWSIFFLDRVISSGTGRPVTLRDEEIELCFP  487
                     E+     R     FW+ F+LDR+IS   GRP  L D +I+L  P
Sbjct  144  --------IEEAELRRR----LFWACFYLDRLISLILGRPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.318    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 729280864


Query= TCONS_00007895

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  99.1    1e-23


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 99.1 bits (247),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 87/233 (37%), Gaps = 57/233 (24%)

Query  282  DLFFVHLGCSFPFLQRDRFLRDLKDK------KVDTMLVDAVCALAARFSPHPLLGPPQA  335
            DLFF +    FP L R  FLRD  +           +L+ A+ AL A FS  P     ++
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA---RS  58

Query  336  PSIDGSELETDVKNSDRGQAFAHRAMGALVDSLSCPTLSVVQACLLLA-YEQFGSNHDSG  394
             S    E    +    R     H        S    +L ++QA LLL  YE    +    
Sbjct  59   SSSLTDEAADGIHFFLRALILIHED-----FSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  395  LWMYLGIAIRMAQDLGMQKLQGLQHSYGRRGVTPSAVVSGRAGQLREEEYDQSNDAQVPL  454
             W Y G+AIR+A+ LG+ +                            +    S   ++  
Sbjct  114  -WRYHGLAIRLARSLGLHR----------------------------DPSYVSPSWKLW-  143

Query  455  SPSAEMNHSEDHRAWEREKVDTFWSIFFLDRVISSGTGRPVTLRDEEIELCFP  507
                     E+     R     FW+ F+LDR+IS   GRP  L D +I+L  P
Sbjct  144  --------IEEAELRRR----LFWACFYLDRLISLILGRPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.319    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 759169424


Query= TCONS_00002666

Length=1041
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  96.4    2e-22


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 96.4 bits (240),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 87/233 (37%), Gaps = 57/233 (24%)

Query  265  DLFFVHLGCSFPFLQRDRFLRDLKDK------KVDTMLVDAVCALAARFSPHPLLGPPQA  318
            DLFF +    FP L R  FLRD  +           +L+ A+ AL A FS  P     ++
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA---RS  58

Query  319  PSIDGSELETDVKNSDRGQAFAHRAMGALVDSLSCPTLSVVQACLLLA-YEQFGSNHDSG  377
             S    E    +    R     H        S    +L ++QA LLL  YE    +    
Sbjct  59   SSSLTDEAADGIHFFLRALILIHED-----FSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  378  LWMYLGIAIRMAQDLGMQKLQGLQHSYGRRGVTPSAVVSGRAGQLREEEYDQSNDAQVPL  437
             W Y G+AIR+A+ LG+ +                            +    S   ++  
Sbjct  114  -WRYHGLAIRLARSLGLHR----------------------------DPSYVSPSWKLW-  143

Query  438  SPSAEMNHSEDHRAWEREKVDTFWSIFFLDRVISSGTGRPVTLRDEEIELCFP  490
                     E+     R     FW+ F+LDR+IS   GRP  L D +I+L  P
Sbjct  144  --------IEEAELRRR----LFWACFYLDRLISLILGRPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.315    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1338002820


Query= TCONS_00002668

Length=1038
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  96.8    1e-22


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 96.8 bits (241),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 87/233 (37%), Gaps = 57/233 (24%)

Query  262  DLFFVHLGCSFPFLQRDRFLRDLKDK------KVDTMLVDAVCALAARFSPHPLLGPPQA  315
            DLFF +    FP L R  FLRD  +           +L+ A+ AL A FS  P     ++
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA---RS  58

Query  316  PSIDGSELETDVKNSDRGQAFAHRAMGALVDSLSCPTLSVVQACLLLA-YEQFGSNHDSG  374
             S    E    +    R     H        S    +L ++QA LLL  YE    +    
Sbjct  59   SSSLTDEAADGIHFFLRALILIHED-----FSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  375  LWMYLGIAIRMAQDLGMQKLQGLQHSYGRRGVTPSAVVSGRAGQLREEEYDQSNDAQVPL  434
             W Y G+AIR+A+ LG+ +                            +    S   ++  
Sbjct  114  -WRYHGLAIRLARSLGLHR----------------------------DPSYVSPSWKLW-  143

Query  435  SPSAEMNHSEDHRAWEREKVDTFWSIFFLDRVISSGTGRPVTLRDEEIELCFP  487
                     E+     R     FW+ F+LDR+IS   GRP  L D +I+L  P
Sbjct  144  --------IEEAELRRR----LFWACFYLDRLISLILGRPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.315    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1333755192


Query= TCONS_00002667

Length=847
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  94.1    7e-22


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 94.1 bits (234),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 87/233 (37%), Gaps = 57/233 (24%)

Query  71   DLFFVHLGCSFPFLQRDRFLRDLKDK------KVDTMLVDAVCALAARFSPHPLLGPPQA  124
            DLFF +    FP L R  FLRD  +           +L+ A+ AL A FS  P     ++
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA---RS  58

Query  125  PSIDGSELETDVKNSDRGQAFAHRAMGALVDSLSCPTLSVVQACLLLA-YEQFGSNHDSG  183
             S    E    +    R     H        S    +L ++QA LLL  YE    +    
Sbjct  59   SSSLTDEAADGIHFFLRALILIHED-----FSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  184  LWMYLGIAIRMAQDLGMQKLQGLQHSYGRRGVTPSAVVSGRAGQLREEEYDQSNDAQVPL  243
             W Y G+AIR+A+ LG+ +                            +    S   ++  
Sbjct  114  -WRYHGLAIRLARSLGLHR----------------------------DPSYVSPSWKLW-  143

Query  244  SPSAEMNHSEDHRAWEREKVDTFWSIFFLDRVISSGTGRPVTLRDEEIELCFP  296
                     E+     R     FW+ F+LDR+IS   GRP  L D +I+L  P
Sbjct  144  --------IEEAELRRR----LFWACFYLDRLISLILGRPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.315    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1079506528


Query= TCONS_00007896

Length=578
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  98.7    1e-23


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 98.7 bits (246),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 87/233 (37%), Gaps = 57/233 (24%)

Query  262  DLFFVHLGCSFPFLQRDRFLRDLKDK------KVDTMLVDAVCALAARFSPHPLLGPPQA  315
            DLFF +    FP L R  FLRD  +           +L+ A+ AL A FS  P     ++
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA---RS  58

Query  316  PSIDGSELETDVKNSDRGQAFAHRAMGALVDSLSCPTLSVVQACLLLA-YEQFGSNHDSG  374
             S    E    +    R     H        S    +L ++QA LLL  YE    +    
Sbjct  59   SSSLTDEAADGIHFFLRALILIHED-----FSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  375  LWMYLGIAIRMAQDLGMQKLQGLQHSYGRRGVTPSAVVSGRAGQLREEEYDQSNDAQVPL  434
             W Y G+AIR+A+ LG+ +                            +    S   ++  
Sbjct  114  -WRYHGLAIRLARSLGLHR----------------------------DPSYVSPSWKLW-  143

Query  435  SPSAEMNHSEDHRAWEREKVDTFWSIFFLDRVISSGTGRPVTLRDEEIELCFP  487
                     E+     R     FW+ F+LDR+IS   GRP  L D +I+L  P
Sbjct  144  --------IEEAELRRR----LFWACFYLDRLISLILGRPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.318    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 726292008


Query= TCONS_00007897

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  94.1    1e-22


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 94.1 bits (234),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 87/233 (37%), Gaps = 57/233 (24%)

Query  71   DLFFVHLGCSFPFLQRDRFLRDLKDK------KVDTMLVDAVCALAARFSPHPLLGPPQA  124
            DLFF +    FP L R  FLRD  +           +L+ A+ AL A FS  P     ++
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA---RS  58

Query  125  PSIDGSELETDVKNSDRGQAFAHRAMGALVDSLSCPTLSVVQACLLLA-YEQFGSNHDSG  183
             S    E    +    R     H        S    +L ++QA LLL  YE    +    
Sbjct  59   SSSLTDEAADGIHFFLRALILIHED-----FSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  184  LWMYLGIAIRMAQDLGMQKLQGLQHSYGRRGVTPSAVVSGRAGQLREEEYDQSNDAQVPL  243
             W Y G+AIR+A+ LG+ +                            +    S   ++  
Sbjct  114  -WRYHGLAIRLARSLGLHR----------------------------DPSYVSPSWKLW-  143

Query  244  SPSAEMNHSEDHRAWEREKVDTFWSIFFLDRVISSGTGRPVTLRDEEIELCFP  296
                     E+     R     FW+ F+LDR+IS   GRP  L D +I+L  P
Sbjct  144  --------IEEAELRRR----LFWACFYLDRLISLILGRPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.320    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00007898

Length=578
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  98.7    1e-23


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 98.7 bits (246),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 87/233 (37%), Gaps = 57/233 (24%)

Query  262  DLFFVHLGCSFPFLQRDRFLRDLKDK------KVDTMLVDAVCALAARFSPHPLLGPPQA  315
            DLFF +    FP L R  FLRD  +           +L+ A+ AL A FS  P     ++
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA---RS  58

Query  316  PSIDGSELETDVKNSDRGQAFAHRAMGALVDSLSCPTLSVVQACLLLA-YEQFGSNHDSG  374
             S    E    +    R     H        S    +L ++QA LLL  YE    +    
Sbjct  59   SSSLTDEAADGIHFFLRALILIHED-----FSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  375  LWMYLGIAIRMAQDLGMQKLQGLQHSYGRRGVTPSAVVSGRAGQLREEEYDQSNDAQVPL  434
             W Y G+AIR+A+ LG+ +                            +    S   ++  
Sbjct  114  -WRYHGLAIRLARSLGLHR----------------------------DPSYVSPSWKLW-  143

Query  435  SPSAEMNHSEDHRAWEREKVDTFWSIFFLDRVISSGTGRPVTLRDEEIELCFP  487
                     E+     R     FW+ F+LDR+IS   GRP  L D +I+L  P
Sbjct  144  --------IEEAELRRR----LFWACFYLDRLISLILGRPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.318    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 726292008


Query= TCONS_00002669

Length=1058
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  96.8    1e-22


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 96.8 bits (241),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 87/233 (37%), Gaps = 57/233 (24%)

Query  282  DLFFVHLGCSFPFLQRDRFLRDLKDK------KVDTMLVDAVCALAARFSPHPLLGPPQA  335
            DLFF +    FP L R  FLRD  +           +L+ A+ AL A FS  P     ++
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA---RS  58

Query  336  PSIDGSELETDVKNSDRGQAFAHRAMGALVDSLSCPTLSVVQACLLLA-YEQFGSNHDSG  394
             S    E    +    R     H        S    +L ++QA LLL  YE    +    
Sbjct  59   SSSLTDEAADGIHFFLRALILIHED-----FSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  395  LWMYLGIAIRMAQDLGMQKLQGLQHSYGRRGVTPSAVVSGRAGQLREEEYDQSNDAQVPL  454
             W Y G+AIR+A+ LG+ +                            +    S   ++  
Sbjct  114  -WRYHGLAIRLARSLGLHR----------------------------DPSYVSPSWKLW-  143

Query  455  SPSAEMNHSEDHRAWEREKVDTFWSIFFLDRVISSGTGRPVTLRDEEIELCFP  507
                     E+     R     FW+ F+LDR+IS   GRP  L D +I+L  P
Sbjct  144  --------IEEAELRRR----LFWACFYLDRLISLILGRPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.315    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1362072712


Query= TCONS_00002670

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  94.9    8e-23


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 94.9 bits (236),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 87/233 (37%), Gaps = 57/233 (24%)

Query  71   DLFFVHLGCSFPFLQRDRFLRDLKDK------KVDTMLVDAVCALAARFSPHPLLGPPQA  124
            DLFF +    FP L R  FLRD  +           +L+ A+ AL A FS  P     ++
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA---RS  58

Query  125  PSIDGSELETDVKNSDRGQAFAHRAMGALVDSLSCPTLSVVQACLLLA-YEQFGSNHDSG  183
             S    E    +    R     H        S    +L ++QA LLL  YE    +    
Sbjct  59   SSSLTDEAADGIHFFLRALILIHED-----FSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  184  LWMYLGIAIRMAQDLGMQKLQGLQHSYGRRGVTPSAVVSGRAGQLREEEYDQSNDAQVPL  243
             W Y G+AIR+A+ LG+ +                            +    S   ++  
Sbjct  114  -WRYHGLAIRLARSLGLHR----------------------------DPSYVSPSWKLW-  143

Query  244  SPSAEMNHSEDHRAWEREKVDTFWSIFFLDRVISSGTGRPVTLRDEEIELCFP  296
                     E+     R     FW+ F+LDR+IS   GRP  L D +I+L  P
Sbjct  144  --------IEEAELRRR----LFWACFYLDRLISLILGRPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.321    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00002672

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  99.1    8e-24


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 99.1 bits (247),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 87/233 (37%), Gaps = 57/233 (24%)

Query  249  DLFFVHLGCSFPFLQRDRFLRDLKDK------KVDTMLVDAVCALAARFSPHPLLGPPQA  302
            DLFF +    FP L R  FLRD  +           +L+ A+ AL A FS  P     ++
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA---RS  58

Query  303  PSIDGSELETDVKNSDRGQAFAHRAMGALVDSLSCPTLSVVQACLLLA-YEQFGSNHDSG  361
             S    E    +    R     H        S    +L ++QA LLL  YE    +    
Sbjct  59   SSSLTDEAADGIHFFLRALILIHED-----FSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  362  LWMYLGIAIRMAQDLGMQKLQGLQHSYGRRGVTPSAVVSGRAGQLREEEYDQSNDAQVPL  421
             W Y G+AIR+A+ LG+ +                            +    S   ++  
Sbjct  114  -WRYHGLAIRLARSLGLHR----------------------------DPSYVSPSWKLW-  143

Query  422  SPSAEMNHSEDHRAWEREKVDTFWSIFFLDRVISSGTGRPVTLRDEEIELCFP  474
                     E+     R     FW+ F+LDR+IS   GRP  L D +I+L  P
Sbjct  144  --------IEEAELRRR----LFWACFYLDRLISLILGRPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.317    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 709853300


Query= TCONS_00002671

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  93.3    1e-22


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 93.3 bits (232),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 87/233 (37%), Gaps = 57/233 (24%)

Query  5    DLFFVHLGCSFPFLQRDRFLRDLKDK------KVDTMLVDAVCALAARFSPHPLLGPPQA  58
            DLFF +    FP L R  FLRD  +           +L+ A+ AL A FS  P     ++
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA---RS  58

Query  59   PSIDGSELETDVKNSDRGQAFAHRAMGALVDSLSCPTLSVVQACLLLA-YEQFGSNHDSG  117
             S    E    +    R     H        S    +L ++QA LLL  YE    +    
Sbjct  59   SSSLTDEAADGIHFFLRALILIHED-----FSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  118  LWMYLGIAIRMAQDLGMQKLQGLQHSYGRRGVTPSAVVSGRAGQLREEEYDQSNDAQVPL  177
             W Y G+AIR+A+ LG+ +                            +    S   ++  
Sbjct  114  -WRYHGLAIRLARSLGLHR----------------------------DPSYVSPSWKLW-  143

Query  178  SPSAEMNHSEDHRAWEREKVDTFWSIFFLDRVISSGTGRPVTLRDEEIELCFP  230
                     E+     R     FW+ F+LDR+IS   GRP  L D +I+L  P
Sbjct  144  --------IEEAELRRR----LFWACFYLDRLISLILGRPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.322    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00007899

Length=809
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  97.6    5e-23


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 97.6 bits (243),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 87/233 (37%), Gaps = 57/233 (24%)

Query  262  DLFFVHLGCSFPFLQRDRFLRDLKDK------KVDTMLVDAVCALAARFSPHPLLGPPQA  315
            DLFF +    FP L R  FLRD  +           +L+ A+ AL A FS  P     ++
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA---RS  58

Query  316  PSIDGSELETDVKNSDRGQAFAHRAMGALVDSLSCPTLSVVQACLLLA-YEQFGSNHDSG  374
             S    E    +    R     H        S    +L ++QA LLL  YE    +    
Sbjct  59   SSSLTDEAADGIHFFLRALILIHED-----FSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  375  LWMYLGIAIRMAQDLGMQKLQGLQHSYGRRGVTPSAVVSGRAGQLREEEYDQSNDAQVPL  434
             W Y G+AIR+A+ LG+ +                            +    S   ++  
Sbjct  114  -WRYHGLAIRLARSLGLHR----------------------------DPSYVSPSWKLW-  143

Query  435  SPSAEMNHSEDHRAWEREKVDTFWSIFFLDRVISSGTGRPVTLRDEEIELCFP  487
                     E+     R     FW+ F+LDR+IS   GRP  L D +I+L  P
Sbjct  144  --------IEEAELRRR----LFWACFYLDRLISLILGRPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.317    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1040433680


Query= TCONS_00002673

Length=867
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  94.5    7e-22


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 94.5 bits (235),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 87/233 (37%), Gaps = 57/233 (24%)

Query  91   DLFFVHLGCSFPFLQRDRFLRDLKDK------KVDTMLVDAVCALAARFSPHPLLGPPQA  144
            DLFF +    FP L R  FLRD  +           +L+ A+ AL A FS  P     ++
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA---RS  58

Query  145  PSIDGSELETDVKNSDRGQAFAHRAMGALVDSLSCPTLSVVQACLLLA-YEQFGSNHDSG  203
             S    E    +    R     H        S    +L ++QA LLL  YE    +    
Sbjct  59   SSSLTDEAADGIHFFLRALILIHED-----FSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  204  LWMYLGIAIRMAQDLGMQKLQGLQHSYGRRGVTPSAVVSGRAGQLREEEYDQSNDAQVPL  263
             W Y G+AIR+A+ LG+ +                            +    S   ++  
Sbjct  114  -WRYHGLAIRLARSLGLHR----------------------------DPSYVSPSWKLW-  143

Query  264  SPSAEMNHSEDHRAWEREKVDTFWSIFFLDRVISSGTGRPVTLRDEEIELCFP  316
                     E+     R     FW+ F+LDR+IS   GRP  L D +I+L  P
Sbjct  144  --------IEEAELRRR----LFWACFYLDRLISLILGRPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.315    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1108216808


Query= TCONS_00002674

Length=323


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00002675

Length=1045
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  96.8    1e-22


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 96.8 bits (241),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 87/233 (37%), Gaps = 57/233 (24%)

Query  269  DLFFVHLGCSFPFLQRDRFLRDLKDK------KVDTMLVDAVCALAARFSPHPLLGPPQA  322
            DLFF +    FP L R  FLRD  +           +L+ A+ AL A FS  P     ++
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA---RS  58

Query  323  PSIDGSELETDVKNSDRGQAFAHRAMGALVDSLSCPTLSVVQACLLLA-YEQFGSNHDSG  381
             S    E    +    R     H        S    +L ++QA LLL  YE    +    
Sbjct  59   SSSLTDEAADGIHFFLRALILIHED-----FSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  382  LWMYLGIAIRMAQDLGMQKLQGLQHSYGRRGVTPSAVVSGRAGQLREEEYDQSNDAQVPL  441
             W Y G+AIR+A+ LG+ +                            +    S   ++  
Sbjct  114  -WRYHGLAIRLARSLGLHR----------------------------DPSYVSPSWKLW-  143

Query  442  SPSAEMNHSEDHRAWEREKVDTFWSIFFLDRVISSGTGRPVTLRDEEIELCFP  494
                     E+     R     FW+ F+LDR+IS   GRP  L D +I+L  P
Sbjct  144  --------IEEAELRRR----LFWACFYLDRLISLILGRPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.315    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1343666324


Query= TCONS_00002676

Length=701


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 896672320


Query= TCONS_00007901

Length=624


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 795035696


Query= TCONS_00007900

Length=602


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 762158280


Query= TCONS_00007902

Length=611


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 775608132


Query= TCONS_00002677

Length=321


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0706    0.140     1.90     42.6     43.6 

Effective search space used: 372672612


Query= TCONS_00002678

Length=311


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00007904

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00002681

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00002684

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433285 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superf...  113     9e-30


>CDD:433285 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily. 
 
Length=191

 Score = 113 bits (284),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 66/254 (26%), Positives = 89/254 (35%), Gaps = 64/254 (25%)

Query  152  CSIIHNFLPPDEADALLLELLDESKHFSRYRFQLFDRTVESPHTSSLYVATPEEIRQQTS  211
              ++  FL P+EA  LL ELL+E   F +   Q   R +    T+   +    +      
Sbjct  2    LVLLPGFLSPEEAAELLRELLEEG-PFRQPTTQGG-RPMSVRMTNCGQLGWVTDGP----  55

Query  212  EYTYGGRYRSNVRQLTPYLRAVSAKVQRAVNDEVQKRIRACYPGGKKLKYQSPKEWVPNA  271
             Y Y G          P+  A+    +R           A YPG           W PNA
Sbjct  56   GYRYSGVDPVTGEPWPPFPEALLQLAERLAA-------EAGYPG-----------WSPNA  97

Query  272  AFVNCYDGPAESVGYHSDELTYLGPRAIIGSLSLGVEREFRVRRIVASDDDAENNSEVSF  331
              VN Y   A  +G H D     GP A I SLSLG    FR                   
Sbjct  98   CLVNFYRDGA-RMGLHQDRDES-GPGAPIVSLSLGASATFRFG-----------------  138

Query  332  MVSTADSPSRRKTTSKGIDGRGDAQGQISIHLPHNSLLVMHAEMQEEWKHAIVPAQTVSP  391
                               G+  +   IS+ L    +LVM  E +  + H + P +    
Sbjct  139  -------------------GKSRSDPTISLRLESGDVLVMGGESRLAY-HGVPPIRR-GT  177

Query  392  HPLSGNRRINITYR  405
            HPL G  RIN+T+R
Sbjct  178  HPLLGGGRINLTFR  191



Lambda      K        H        a         alpha
   0.317    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00007905

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00002680

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00007906

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00002685

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00007907

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00002683

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433285 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superf...  113     9e-30


>CDD:433285 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily. 
 
Length=191

 Score = 113 bits (284),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 66/254 (26%), Positives = 89/254 (35%), Gaps = 64/254 (25%)

Query  152  CSIIHNFLPPDEADALLLELLDESKHFSRYRFQLFDRTVESPHTSSLYVATPEEIRQQTS  211
              ++  FL P+EA  LL ELL+E   F +   Q   R +    T+   +    +      
Sbjct  2    LVLLPGFLSPEEAAELLRELLEEG-PFRQPTTQGG-RPMSVRMTNCGQLGWVTDGP----  55

Query  212  EYTYGGRYRSNVRQLTPYLRAVSAKVQRAVNDEVQKRIRACYPGGKKLKYQSPKEWVPNA  271
             Y Y G          P+  A+    +R           A YPG           W PNA
Sbjct  56   GYRYSGVDPVTGEPWPPFPEALLQLAERLAA-------EAGYPG-----------WSPNA  97

Query  272  AFVNCYDGPAESVGYHSDELTYLGPRAIIGSLSLGVEREFRVRRIVASDDDAENNSEVSF  331
              VN Y   A  +G H D     GP A I SLSLG    FR                   
Sbjct  98   CLVNFYRDGA-RMGLHQDRDES-GPGAPIVSLSLGASATFRFG-----------------  138

Query  332  MVSTADSPSRRKTTSKGIDGRGDAQGQISIHLPHNSLLVMHAEMQEEWKHAIVPAQTVSP  391
                               G+  +   IS+ L    +LVM  E +  + H + P +    
Sbjct  139  -------------------GKSRSDPTISLRLESGDVLVMGGESRLAY-HGVPPIRR-GT  177

Query  392  HPLSGNRRINITYR  405
            HPL G  RIN+T+R
Sbjct  178  HPLLGGGRINLTFR  191



Lambda      K        H        a         alpha
   0.317    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00002682

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433285 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superf...  113     9e-30


>CDD:433285 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily. 
 
Length=191

 Score = 113 bits (284),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 66/254 (26%), Positives = 89/254 (35%), Gaps = 64/254 (25%)

Query  152  CSIIHNFLPPDEADALLLELLDESKHFSRYRFQLFDRTVESPHTSSLYVATPEEIRQQTS  211
              ++  FL P+EA  LL ELL+E   F +   Q   R +    T+   +    +      
Sbjct  2    LVLLPGFLSPEEAAELLRELLEEG-PFRQPTTQGG-RPMSVRMTNCGQLGWVTDGP----  55

Query  212  EYTYGGRYRSNVRQLTPYLRAVSAKVQRAVNDEVQKRIRACYPGGKKLKYQSPKEWVPNA  271
             Y Y G          P+  A+    +R           A YPG           W PNA
Sbjct  56   GYRYSGVDPVTGEPWPPFPEALLQLAERLAA-------EAGYPG-----------WSPNA  97

Query  272  AFVNCYDGPAESVGYHSDELTYLGPRAIIGSLSLGVEREFRVRRIVASDDDAENNSEVSF  331
              VN Y   A  +G H D     GP A I SLSLG    FR                   
Sbjct  98   CLVNFYRDGA-RMGLHQDRDES-GPGAPIVSLSLGASATFRFG-----------------  138

Query  332  MVSTADSPSRRKTTSKGIDGRGDAQGQISIHLPHNSLLVMHAEMQEEWKHAIVPAQTVSP  391
                               G+  +   IS+ L    +LVM  E +  + H + P +    
Sbjct  139  -------------------GKSRSDPTISLRLESGDVLVMGGESRLAY-HGVPPIRR-GT  177

Query  392  HPLSGNRRINITYR  405
            HPL G  RIN+T+R
Sbjct  178  HPLLGGGRINLTFR  191



Lambda      K        H        a         alpha
   0.317    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00007908

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00007910

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  107     3e-29


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 107 bits (269),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 3/96 (3%)

Query  74   VIFYHSGGFVQGSLDTEDISCRHMALGGPSTVISVDYRLSPAHQYPIPLNDGWDSFEYII  133
            ++++H GGFV GS DT D  CR +A    + V+SVDYRL+P H +P   +D + +  ++ 
Sbjct  1    LVYFHGGGFVLGSADTHDRLCRRLAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLA  60

Query  134  TNLPTLLPKHGASARVVISGTSSGGQIAAIVSQKAR  169
                 L       +R+ ++G S+GG +AA V+ +AR
Sbjct  61   EQAAEL---GADPSRIAVAGDSAGGNLAAAVALRAR  93



Lambda      K        H        a         alpha
   0.318    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00002687

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  147     1e-43


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 147 bits (373),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 24/231 (10%)

Query  74   VIFYHSGGFVQGSLDTEDISCRHMALGGPSTVISVDYRLSPAHQYPIPLNDGWDSFEYII  133
            ++++H GGFV GS DT D  CR +A    + V+SVDYRL+P H +P   +D + +  ++ 
Sbjct  1    LVYFHGGGFVLGSADTHDRLCRRLAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLA  60

Query  134  TNLPTLLPKHGASARVVISGTSSGGQIAAIVSQKARHWTRDPTKAAVAAGVTISGVLLRA  193
                 L       +R+ ++G S+GG +AA V+ +AR                 +G +L  
Sbjct  61   EQAAEL---GADPSRIAVAGDSAGGNLAAAVALRARD----------EGLPKPAGQVLIY  107

Query  194  PVTVRGTDVVLIPPCFRDLHQSWTEELETAKLDRQGMAENHDLLGVPWAERAHPDAYPLW  253
            P T   T+                E  +   L R  M     L  +P A+R  P A PL+
Sbjct  108  PGTDLRTESPSYLA---------REFADGPLLTRAAMDWFWRLY-LPGADRDDPLASPLF  157

Query  254  G-RFDGLPKTYVQICDVDILRDDAVCYVRGLQNADIAVRVSFYQSLPHIFW  303
                 GLP   V + + D LRD+   Y   L+ A + V +  Y  +PH F 
Sbjct  158  ASDLSGLPPALVVVAEFDPLRDEGEAYAERLRAAGVPVELIEYPGMPHGFH  208



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00002688

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  147     1e-43


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 147 bits (373),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 24/231 (10%)

Query  74   VIFYHSGGFVQGSLDTEDISCRHMALGGPSTVISVDYRLSPAHQYPIPLNDGWDSFEYII  133
            ++++H GGFV GS DT D  CR +A    + V+SVDYRL+P H +P   +D + +  ++ 
Sbjct  1    LVYFHGGGFVLGSADTHDRLCRRLAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLA  60

Query  134  TNLPTLLPKHGASARVVISGTSSGGQIAAIVSQKARHWTRDPTKAAVAAGVTISGVLLRA  193
                 L       +R+ ++G S+GG +AA V+ +AR                 +G +L  
Sbjct  61   EQAAEL---GADPSRIAVAGDSAGGNLAAAVALRARD----------EGLPKPAGQVLIY  107

Query  194  PVTVRGTDVVLIPPCFRDLHQSWTEELETAKLDRQGMAENHDLLGVPWAERAHPDAYPLW  253
            P T   T+                E  +   L R  M     L  +P A+R  P A PL+
Sbjct  108  PGTDLRTESPSYLA---------REFADGPLLTRAAMDWFWRLY-LPGADRDDPLASPLF  157

Query  254  G-RFDGLPKTYVQICDVDILRDDAVCYVRGLQNADIAVRVSFYQSLPHIFW  303
                 GLP   V + + D LRD+   Y   L+ A + V +  Y  +PH F 
Sbjct  158  ASDLSGLPPALVVVAEFDPLRDEGEAYAERLRAAGVPVELIEYPGMPHGFH  208



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00002689

Length=143
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  75.3    3e-18


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 75.3 bits (186),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 23/73 (32%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query  1   MALGGPSTVISVDYRLSPAHQYPIPLNDGWDSFEYIITNLPTLLPKHGASARVVISGTSS  60
           +A    + V+SVDYRL+P H +P   +D + +  ++      L       +R+ ++G S+
Sbjct  24  LAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLAEQAAEL---GADPSRIAVAGDSA  80

Query  61  GGQIAAIVSQKAR  73
           GG +AA V+ +AR
Sbjct  81  GGNLAAAVALRAR  93



Lambda      K        H        a         alpha
   0.318    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00002690

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  115     3e-32


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 115 bits (289),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 56/208 (27%), Positives = 88/208 (42%), Gaps = 24/208 (12%)

Query  1    MALGGPSTVISVDYRLSPAHQYPIPLNDGWDSFEYIITNLPTLLPKHGASARVVISGTSS  60
            +A    + V+SVDYRL+P H +P   +D + +  ++      L       +R+ ++G S+
Sbjct  24   LAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLAEQAAEL---GADPSRIAVAGDSA  80

Query  61   GGQIAAIVSQKARHWTRDPTKAAVAAGVTISGVLLRAPVTVRGTDVVLIPPCFRDLHQSW  120
            GG +AA V+ +AR                 +G +L  P T   T+               
Sbjct  81   GGNLAAAVALRARD----------EGLPKPAGQVLIYPGTDLRTESPSYLA---------  121

Query  121  TEELETAKLDRQGMAENHDLLGVPWAERAHPDAYPLWG-RFDGLPKTYVQICDVDILRDD  179
             E  +   L R  M     L  +P A+R  P A PL+     GLP   V + + D LRD+
Sbjct  122  REFADGPLLTRAAMDWFWRLY-LPGADRDDPLASPLFASDLSGLPPALVVVAEFDPLRDE  180

Query  180  AVCYVRGLQNADIAVRVSFYQSLPHIFW  207
               Y   L+ A + V +  Y  +PH F 
Sbjct  181  GEAYAERLRAAGVPVELIEYPGMPHGFH  208



Lambda      K        H        a         alpha
   0.321    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00007911

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  145     1e-42


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 145 bits (367),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 24/231 (10%)

Query  74   VIFYHSGGFVQGSLDTEDISCRHMALGGPSTVISVDYRLSPAHQYPIPLNDGWDSFEYII  133
            ++++H GGFV GS DT D  CR +A    + V+SVDYRL+P H +P   +D + +  ++ 
Sbjct  1    LVYFHGGGFVLGSADTHDRLCRRLAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLA  60

Query  134  TNLPTLLPKHGASARVVISGTSSGGQIAAIVSQKARHWTRDPTKAAVAAGVTISGVLLRA  193
                 L       +R+ ++G S+GG +AA V+ +AR                 +G +L  
Sbjct  61   EQAAEL---GADPSRIAVAGDSAGGNLAAAVALRARD----------EGLPKPAGQVLIY  107

Query  194  PVTVRGTDVVLIPPCFRDLHQSWTEELETAKLDRQGMAENHGLLGVPWAERAHPDAYPLW  253
            P T   T+                E  +   L R  M     L  +P A+R  P A PL+
Sbjct  108  PGTDLRTESPSYLA---------REFADGPLLTRAAMDWFWRLY-LPGADRDDPLASPLF  157

Query  254  G-RFDGLPKTYVQICDVDILRDDAVCYVRGLQNADIAVRVSFYQSLPHIFW  303
                 GLP   V + + D LRD+   Y   L+ A + V +  Y  +PH F 
Sbjct  158  ASDLSGLPPALVVVAEFDPLRDEGEAYAERLRAAGVPVELIEYPGMPHGFH  208



Lambda      K        H        a         alpha
   0.320    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00002691

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  146     2e-43


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 146 bits (371),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 24/231 (10%)

Query  74   VIFYHSGGFVQGSLDTEDISCRHMALGGPSTVISVDYRLSPAHQYPIPLNDGWDSFEYII  133
            ++++H GGFV GS DT D  CR +A    + V+SVDYRL+P H +P   +D + +  ++ 
Sbjct  1    LVYFHGGGFVLGSADTHDRLCRRLAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLA  60

Query  134  TNLPTLLPKHGASARVVISGTSSGGQIAAIVSQKARHWTRDPTKAAVAAGVTISGVLLRA  193
                 L       +R+ ++G S+GG +AA V+ +AR                 +G +L  
Sbjct  61   EQAAEL---GADPSRIAVAGDSAGGNLAAAVALRARD----------EGLPKPAGQVLIY  107

Query  194  PVTVRGTDVVLIPPCFRDLHQSWTEELETAKLDRQGMAENHDLLGVPWAERAHPDAYPLW  253
            P T   T+                E  +   L R  M     L  +P A+R  P A PL+
Sbjct  108  PGTDLRTESPSYLA---------REFADGPLLTRAAMDWFWRLY-LPGADRDDPLASPLF  157

Query  254  G-RFDGLPKTYVQICDVDILRDDAVCYVRGLQNADIAVRVSFYQSLPHIFW  303
                 GLP   V + + D LRD+   Y   L+ A + V +  Y  +PH F 
Sbjct  158  ASDLSGLPPALVVVAEFDPLRDEGEAYAERLRAAGVPVELIEYPGMPHGFH  208



Lambda      K        H        a         alpha
   0.321    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00007912

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00002693

Length=2397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  70.1    8e-13


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 70.1 bits (172),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 98/270 (36%), Gaps = 69/270 (26%)

Query  102  GDLVGLIDTLDYIRGMGFKGIYFAGTGLMNLPWAYDGYSPVDTTLLDMHHGTLEDWRRTI  161
            GDL G+I+ LDY++ +G   I+   + + + P A  GY   D   +D H+GT+ED++  I
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWL--SPIFDSPQADHGYDIADYYKIDPHYGTMEDFKELI  58

Query  162  TEIHNRDMYVIMD---NTLATLSNLIGFKGHLNTSADFRPDEYEVEW-ITDRRYADFKFS  217
            ++ H R + VI+D   N             H  TS        E  W    R   D  + 
Sbjct  59   SKAHERGIKVILDLVVN-------------H--TS-------DEHAWFQESRSSKDNPYR  96

Query  218  NEYNKTCDYPKFWNETGFPLYSGGVEELKGCYNSDFDQYGELEAFGNFPDWKRQ---LTK  274
            + Y        FW         GG       + S F       A+    D K Q   L  
Sbjct  97   DYY--------FWRP-------GGGPIPPNNWRSYFGGS----AWTY--DEKGQEYYLHL  135

Query  275  FASVQDRLREWHKPVRDIITRHYCIQIAS--LD--IDGFR------YDKAVQATLEPLGE  324
            F + Q  L  W  P      R+    +    LD  IDGFR        K      E  G 
Sbjct  136  FVAGQPDL-NWENPE----VRNELYDVVRFWLDKGIDGFRIDVVKHISKVPGLPFENNGP  190

Query  325  MSAAFRECAKKY--GKHNFFLPGEITSGNT  352
                F +   +   G  +    GE+  G+ 
Sbjct  191  FWHEFTQAMNETVFGYKDVMTVGEVFHGDG  220



Lambda      K        H        a         alpha
   0.320    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2979020160


Query= TCONS_00007914

Length=2249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic d...  62.7    8e-11


>CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic domain. 
 
Length=239

 Score = 62.7 bits (153),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 45/227 (20%), Positives = 80/227 (35%), Gaps = 37/227 (16%)

Query  999   VLIATMEY--LIQDWKVKVKIGGLGVMAQLMSEHLRHQNL---IWVVPCVGDIEYPEDTP  1053
             +L    E            K GGL  +   + + L        + ++P  G+I   E   
Sbjct  1     ILFVASEVAPFA-------KTGGLADVVGALPKALAALGHDVRV-IMPRYGNIPE-ERNQ  51

Query  1054  AEPMMVTILDKPYLVNVQYHVV-----ENITYVLLDAPVFRQQTKAEPY-PPRMDDLDSA  1107
              E ++   +     V      V     + +    LD P +    +   Y     D  D+A
Sbjct  52    LEDVIRLSVAAGVPVRPLTVGVARLELDGVDVYFLDNPDY--FDRPGLYGDDGRDYEDNA  109

Query  1108  VYYSAWNQCIAETIKRFPSI-DLYHINDFHGCLAPLYL------LPTRTVPVCLSLHNAE  1160
               ++ +++   E  K+   I D+ H +D+H  L P YL       P + +    ++HN  
Sbjct  110   ERFAFFSRAALELAKKLGWIPDIIHCHDWHTALVPAYLKEAYADDPFKNIKTVFTIHNLA  169

Query  1161  FQGLWPLRTQQEKKEVCSVFNIPIETATKYCQ-FGNVFNLLHTGASY  1206
             +QG +P        ++  +  +P E        F    N L  G  Y
Sbjct  170   YQGRFP-------ADLLDLLGLPPEDFNLDGLEFYGQINFLKAGIVY  209



Lambda      K        H        a         alpha
   0.321    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2786909056


Query= TCONS_00007916

Length=2315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  70.5    6e-13


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 70.5 bits (173),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 98/270 (36%), Gaps = 69/270 (26%)

Query  5    GDLVGLIDTLDYIRGMGFKGIYFAGTGLMNLPWAYDGYSPVDTTLLDMHHGTLEDWRRTI  64
            GDL G+I+ LDY++ +G   I+   + + + P A  GY   D   +D H+GT+ED++  I
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWL--SPIFDSPQADHGYDIADYYKIDPHYGTMEDFKELI  58

Query  65   TEIHNRDMYVIMD---NTLATLSNLIGFKGHLNTSADFRPDEYEVEW-ITDRRYADFKFS  120
            ++ H R + VI+D   N             H  TS        E  W    R   D  + 
Sbjct  59   SKAHERGIKVILDLVVN-------------H--TS-------DEHAWFQESRSSKDNPYR  96

Query  121  NEYNKTCDYPKFWNETGFPLYSGGVEELKGCYNSDFDQYGELEAFGNFPDWKRQ---LTK  177
            + Y        FW         GG       + S F       A+    D K Q   L  
Sbjct  97   DYY--------FWRP-------GGGPIPPNNWRSYFGGS----AWTY--DEKGQEYYLHL  135

Query  178  FASVQDRLREWHKPVRDIITRHYCIQIAS--LD--IDGFR------YDKAVQATLEPLGE  227
            F + Q  L  W  P      R+    +    LD  IDGFR        K      E  G 
Sbjct  136  FVAGQPDL-NWENPE----VRNELYDVVRFWLDKGIDGFRIDVVKHISKVPGLPFENNGP  190

Query  228  MSAAFRECAKKY--GKHNFFLPGEITSGNT  255
                F +   +   G  +    GE+  G+ 
Sbjct  191  FWHEFTQAMNETVFGYKDVMTVGEVFHGDG  220



Lambda      K        H        a         alpha
   0.321    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0769    0.140     1.90     42.6     43.6 

Effective search space used: 2872580224


Query= TCONS_00007915

Length=2249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic d...  62.7    8e-11


>CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic domain. 
 
Length=239

 Score = 62.7 bits (153),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 45/227 (20%), Positives = 80/227 (35%), Gaps = 37/227 (16%)

Query  999   VLIATMEY--LIQDWKVKVKIGGLGVMAQLMSEHLRHQNL---IWVVPCVGDIEYPEDTP  1053
             +L    E            K GGL  +   + + L        + ++P  G+I   E   
Sbjct  1     ILFVASEVAPFA-------KTGGLADVVGALPKALAALGHDVRV-IMPRYGNIPE-ERNQ  51

Query  1054  AEPMMVTILDKPYLVNVQYHVV-----ENITYVLLDAPVFRQQTKAEPY-PPRMDDLDSA  1107
              E ++   +     V      V     + +    LD P +    +   Y     D  D+A
Sbjct  52    LEDVIRLSVAAGVPVRPLTVGVARLELDGVDVYFLDNPDY--FDRPGLYGDDGRDYEDNA  109

Query  1108  VYYSAWNQCIAETIKRFPSI-DLYHINDFHGCLAPLYL------LPTRTVPVCLSLHNAE  1160
               ++ +++   E  K+   I D+ H +D+H  L P YL       P + +    ++HN  
Sbjct  110   ERFAFFSRAALELAKKLGWIPDIIHCHDWHTALVPAYLKEAYADDPFKNIKTVFTIHNLA  169

Query  1161  FQGLWPLRTQQEKKEVCSVFNIPIETATKYCQ-FGNVFNLLHTGASY  1206
             +QG +P        ++  +  +P E        F    N L  G  Y
Sbjct  170   YQGRFP-------ADLLDLLGLPPEDFNLDGLEFYGQINFLKAGIVY  209



Lambda      K        H        a         alpha
   0.321    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2786909056


Query= TCONS_00002694

Length=2412
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  70.1    8e-13


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 70.1 bits (172),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 98/270 (36%), Gaps = 69/270 (26%)

Query  102  GDLVGLIDTLDYIRGMGFKGIYFAGTGLMNLPWAYDGYSPVDTTLLDMHHGTLEDWRRTI  161
            GDL G+I+ LDY++ +G   I+   + + + P A  GY   D   +D H+GT+ED++  I
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWL--SPIFDSPQADHGYDIADYYKIDPHYGTMEDFKELI  58

Query  162  TEIHNRDMYVIMD---NTLATLSNLIGFKGHLNTSADFRPDEYEVEW-ITDRRYADFKFS  217
            ++ H R + VI+D   N             H  TS        E  W    R   D  + 
Sbjct  59   SKAHERGIKVILDLVVN-------------H--TS-------DEHAWFQESRSSKDNPYR  96

Query  218  NEYNKTCDYPKFWNETGFPLYSGGVEELKGCYNSDFDQYGELEAFGNFPDWKRQ---LTK  274
            + Y        FW         GG       + S F       A+    D K Q   L  
Sbjct  97   DYY--------FWRP-------GGGPIPPNNWRSYFGGS----AWTY--DEKGQEYYLHL  135

Query  275  FASVQDRLREWHKPVRDIITRHYCIQIAS--LD--IDGFR------YDKAVQATLEPLGE  324
            F + Q  L  W  P      R+    +    LD  IDGFR        K      E  G 
Sbjct  136  FVAGQPDL-NWENPE----VRNELYDVVRFWLDKGIDGFRIDVVKHISKVPGLPFENNGP  190

Query  325  MSAAFRECAKKY--GKHNFFLPGEITSGNT  352
                F +   +   G  +    GE+  G+ 
Sbjct  191  FWHEFTQAMNETVFGYKDVMTVGEVFHGDG  220



Lambda      K        H        a         alpha
   0.320    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2998490880


Query= TCONS_00007917

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459912 pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase    357     5e-125


>CDD:459912 pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase.  
Length=417

 Score = 357 bits (919),  Expect = 5e-125, Method: Composition-based stats.
 Identities = 124/199 (62%), Positives = 142/199 (71%), Gaps = 3/199 (2%)

Query  1    MLDLDHGTYPYVTSSSTGLGGAVQALSLNPTSITSVIGVVKAYTTRVGSGPFPSEQLNEY  60
            +LD+DHGTYPYVTSS+T  GGA   L + PT I  VIGVVKAYTTRVG GPFP+E  +E 
Sbjct  222  LLDIDHGTYPYVTSSNTTAGGACTGLGIGPTKIDEVIGVVKAYTTRVGEGPFPTELFDET  281

Query  61   GDKLQSVGREFGVTTGRRRRCGWFDLVLCRYSQAINHYTALNLTKLDILDDFDEIKVAVA  120
            G+KL+  G EFG TTGR RRCGW DLV  RY+  IN  T L LTKLD+LD  DEIKV VA
Sbjct  282  GEKLRERGHEFGATTGRPRRCGWLDLVALRYAVRINGVTGLALTKLDVLDGLDEIKVCVA  341

Query  121  YVLPDGTRLTDTYPADPEVLEKVKVEYVTLPGWKSNTMGVKKYEDLPANARAYIEYIERE  180
            Y L DG R  D +PAD E LEKV+  Y TLPGWK +  GV+ +EDLP NAR Y+E+IE  
Sbjct  342  YEL-DGKR-IDYFPADLEDLEKVEPVYETLPGWKEDISGVRSFEDLPENARKYVEFIEEL  399

Query  181  LGGVPIKWIGTGPARDHMI  199
            L GVPIK I  GP R+  I
Sbjct  400  L-GVPIKIISVGPDREQTI  417



Lambda      K        H        a         alpha
   0.318    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00007918

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459912 pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase    357     5e-125


>CDD:459912 pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase.  
Length=417

 Score = 357 bits (919),  Expect = 5e-125, Method: Composition-based stats.
 Identities = 124/199 (62%), Positives = 142/199 (71%), Gaps = 3/199 (2%)

Query  1    MLDLDHGTYPYVTSSSTGLGGAVQALSLNPTSITSVIGVVKAYTTRVGSGPFPSEQLNEY  60
            +LD+DHGTYPYVTSS+T  GGA   L + PT I  VIGVVKAYTTRVG GPFP+E  +E 
Sbjct  222  LLDIDHGTYPYVTSSNTTAGGACTGLGIGPTKIDEVIGVVKAYTTRVGEGPFPTELFDET  281

Query  61   GDKLQSVGREFGVTTGRRRRCGWFDLVLCRYSQAINHYTALNLTKLDILDDFDEIKVAVA  120
            G+KL+  G EFG TTGR RRCGW DLV  RY+  IN  T L LTKLD+LD  DEIKV VA
Sbjct  282  GEKLRERGHEFGATTGRPRRCGWLDLVALRYAVRINGVTGLALTKLDVLDGLDEIKVCVA  341

Query  121  YVLPDGTRLTDTYPADPEVLEKVKVEYVTLPGWKSNTMGVKKYEDLPANARAYIEYIERE  180
            Y L DG R  D +PAD E LEKV+  Y TLPGWK +  GV+ +EDLP NAR Y+E+IE  
Sbjct  342  YEL-DGKR-IDYFPADLEDLEKVEPVYETLPGWKEDISGVRSFEDLPENARKYVEFIEEL  399

Query  181  LGGVPIKWIGTGPARDHMI  199
            L GVPIK I  GP R+  I
Sbjct  400  L-GVPIKIISVGPDREQTI  417



Lambda      K        H        a         alpha
   0.318    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00007919

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459912 pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase    357     5e-125


>CDD:459912 pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase.  
Length=417

 Score = 357 bits (919),  Expect = 5e-125, Method: Composition-based stats.
 Identities = 124/199 (62%), Positives = 142/199 (71%), Gaps = 3/199 (2%)

Query  1    MLDLDHGTYPYVTSSSTGLGGAVQALSLNPTSITSVIGVVKAYTTRVGSGPFPSEQLNEY  60
            +LD+DHGTYPYVTSS+T  GGA   L + PT I  VIGVVKAYTTRVG GPFP+E  +E 
Sbjct  222  LLDIDHGTYPYVTSSNTTAGGACTGLGIGPTKIDEVIGVVKAYTTRVGEGPFPTELFDET  281

Query  61   GDKLQSVGREFGVTTGRRRRCGWFDLVLCRYSQAINHYTALNLTKLDILDDFDEIKVAVA  120
            G+KL+  G EFG TTGR RRCGW DLV  RY+  IN  T L LTKLD+LD  DEIKV VA
Sbjct  282  GEKLRERGHEFGATTGRPRRCGWLDLVALRYAVRINGVTGLALTKLDVLDGLDEIKVCVA  341

Query  121  YVLPDGTRLTDTYPADPEVLEKVKVEYVTLPGWKSNTMGVKKYEDLPANARAYIEYIERE  180
            Y L DG R  D +PAD E LEKV+  Y TLPGWK +  GV+ +EDLP NAR Y+E+IE  
Sbjct  342  YEL-DGKR-IDYFPADLEDLEKVEPVYETLPGWKEDISGVRSFEDLPENARKYVEFIEEL  399

Query  181  LGGVPIKWIGTGPARDHMI  199
            L GVPIK I  GP R+  I
Sbjct  400  L-GVPIKIISVGPDREQTI  417



Lambda      K        H        a         alpha
   0.318    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00002695

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459912 pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase    357     5e-125


>CDD:459912 pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase.  
Length=417

 Score = 357 bits (919),  Expect = 5e-125, Method: Composition-based stats.
 Identities = 124/199 (62%), Positives = 142/199 (71%), Gaps = 3/199 (2%)

Query  1    MLDLDHGTYPYVTSSSTGLGGAVQALSLNPTSITSVIGVVKAYTTRVGSGPFPSEQLNEY  60
            +LD+DHGTYPYVTSS+T  GGA   L + PT I  VIGVVKAYTTRVG GPFP+E  +E 
Sbjct  222  LLDIDHGTYPYVTSSNTTAGGACTGLGIGPTKIDEVIGVVKAYTTRVGEGPFPTELFDET  281

Query  61   GDKLQSVGREFGVTTGRRRRCGWFDLVLCRYSQAINHYTALNLTKLDILDDFDEIKVAVA  120
            G+KL+  G EFG TTGR RRCGW DLV  RY+  IN  T L LTKLD+LD  DEIKV VA
Sbjct  282  GEKLRERGHEFGATTGRPRRCGWLDLVALRYAVRINGVTGLALTKLDVLDGLDEIKVCVA  341

Query  121  YVLPDGTRLTDTYPADPEVLEKVKVEYVTLPGWKSNTMGVKKYEDLPANARAYIEYIERE  180
            Y L DG R  D +PAD E LEKV+  Y TLPGWK +  GV+ +EDLP NAR Y+E+IE  
Sbjct  342  YEL-DGKR-IDYFPADLEDLEKVEPVYETLPGWKEDISGVRSFEDLPENARKYVEFIEEL  399

Query  181  LGGVPIKWIGTGPARDHMI  199
            L GVPIK I  GP R+  I
Sbjct  400  L-GVPIKIISVGPDREQTI  417



Lambda      K        H        a         alpha
   0.318    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00002696

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            88.6    1e-20


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 88.6 bits (220),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 36/139 (26%), Positives = 64/139 (46%), Gaps = 6/139 (4%)

Query  1    MSIFPYVYHMVEAFKVTDDDHKIALYAGLITSSFTFAEFSAGMFWGRMSDKIGRKPVLIM  60
            +        + E   ++          GL+ + F+     A    GR+SD+ GR+ VL++
Sbjct  14   LLGPALPLLLAEDLGIS------PTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLI  67

Query  61   GLIGTAISMIVFGFAPNLPTAMVARALGGLLNGNIGVLQTTVAEIVTVKEHQPRAYSIMP  120
            GL+  A+ +++  FA +L   +V R L GL  G +      +       E + RA  ++ 
Sbjct  68   GLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVS  127

Query  121  FVWCLGSIIGPAMGGALAQ  139
              + LG+ +GP +GG LA 
Sbjct  128  AGFGLGAALGPLLGGLLAS  146



Lambda      K        H        a         alpha
   0.324    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00002697

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            88.6    1e-20


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 88.6 bits (220),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 36/139 (26%), Positives = 64/139 (46%), Gaps = 6/139 (4%)

Query  1    MSIFPYVYHMVEAFKVTDDDHKIALYAGLITSSFTFAEFSAGMFWGRMSDKIGRKPVLIM  60
            +        + E   ++          GL+ + F+     A    GR+SD+ GR+ VL++
Sbjct  14   LLGPALPLLLAEDLGIS------PTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLI  67

Query  61   GLIGTAISMIVFGFAPNLPTAMVARALGGLLNGNIGVLQTTVAEIVTVKEHQPRAYSIMP  120
            GL+  A+ +++  FA +L   +V R L GL  G +      +       E + RA  ++ 
Sbjct  68   GLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVS  127

Query  121  FVWCLGSIIGPAMGGALAQ  139
              + LG+ +GP +GG LA 
Sbjct  128  AGFGLGAALGPLLGGLLAS  146



Lambda      K        H        a         alpha
   0.324    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00002698

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            88.6    1e-20


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 88.6 bits (220),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 36/139 (26%), Positives = 64/139 (46%), Gaps = 6/139 (4%)

Query  1    MSIFPYVYHMVEAFKVTDDDHKIALYAGLITSSFTFAEFSAGMFWGRMSDKIGRKPVLIM  60
            +        + E   ++          GL+ + F+     A    GR+SD+ GR+ VL++
Sbjct  14   LLGPALPLLLAEDLGIS------PTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLI  67

Query  61   GLIGTAISMIVFGFAPNLPTAMVARALGGLLNGNIGVLQTTVAEIVTVKEHQPRAYSIMP  120
            GL+  A+ +++  FA +L   +V R L GL  G +      +       E + RA  ++ 
Sbjct  68   GLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVS  127

Query  121  FVWCLGSIIGPAMGGALAQ  139
              + LG+ +GP +GG LA 
Sbjct  128  AGFGLGAALGPLLGGLLAS  146



Lambda      K        H        a         alpha
   0.324    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00007920

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00007922

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00002699

Length=23


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 75925852


Query= TCONS_00002700

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00002701

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00002702

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00007923

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00002703

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The ...  103     4e-27
CDD:460027 pfam01018, GTP1_OBG, GTP1/OBG. The N-terminal domain o...  99.7    3e-25


>CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase.  The full-length 
GTPase protein is required for the complete activity of 
the protein of interacting with the 50S ribosome and binding 
of both adenine and guanine nucleotides, with a preference 
for guanine nucleotide.
Length=113

 Score = 103 bits (260),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 45/130 (35%), Positives = 62/130 (48%), Gaps = 21/130 (16%)

Query  304  DVGLVGKPNAGKSTLLRSLTNSRTRVGNWAFTTLSPSIGTVIIDDYKGRPLVEAKGKAMR  363
             V LVG+PN GKSTL+ +LT ++  V ++  TT  P+ G + +   +             
Sbjct  1    RVALVGRPNVGKSTLINALTGAKAIVSDYPGTTRDPNEGRLELKGKQ-------------  47

Query  364  TNFTIADIPGLIEGAHLDRGLGLGFLRHIERAGILAFVVDLSAGDPVQGLQNLWHELSEY  423
                + D PGLIEGA    GLG  FL  IE A ++ FVVD       +G+  L  EL E 
Sbjct  48   --IILVDTPGLIEGASEGEGLGRAFLAIIE-ADLILFVVDSE-----EGITPLDEELLEL  99

Query  424  ERIRNTESVL  433
             R      +L
Sbjct  100  LRENKKPIIL  109


>CDD:460027 pfam01018, GTP1_OBG, GTP1/OBG.  The N-terminal domain of the 
GTPase OBG has the OBG fold, which is formed by three glycine-rich 
regions inserted into a small 8-stranded beta-sandwich 
these regions form six left-handed collagen-like helices packed 
and H-bonded together.
Length=155

 Score = 99.7 bits (250),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 26/109 (24%)

Query  81   DKCRSTIYAGSGGNGCVSFLREKYIEEGPPNGGDGGSGGS-------------IYIQAVE  127
            D+ +  + AG GGNGCVSF REKY+                            + + A E
Sbjct  2    DRAKIKVKAGDGGNGCVSFRREKYVP-------------KGGPDGGDGGRGGDVILVADE  48

Query  128  GITSLHKLARRGVIKAGRGKNGQGKSKGGRRGEDVLLQVPVGTVVREVD  176
             + +L     +   KA  G+NG GK+  G+ GED++++VPVGTVV++ +
Sbjct  49   NLNTLLDFRYKRHFKAENGENGGGKNCHGKNGEDLIIKVPVGTVVKDAE  97



Lambda      K        H        a         alpha
   0.316    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 696403448


Query= TCONS_00002704

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The ...  103     4e-27
CDD:460027 pfam01018, GTP1_OBG, GTP1/OBG. The N-terminal domain o...  99.7    3e-25


>CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase.  The full-length 
GTPase protein is required for the complete activity of 
the protein of interacting with the 50S ribosome and binding 
of both adenine and guanine nucleotides, with a preference 
for guanine nucleotide.
Length=113

 Score = 103 bits (260),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 45/130 (35%), Positives = 62/130 (48%), Gaps = 21/130 (16%)

Query  304  DVGLVGKPNAGKSTLLRSLTNSRTRVGNWAFTTLSPSIGTVIIDDYKGRPLVEAKGKAMR  363
             V LVG+PN GKSTL+ +LT ++  V ++  TT  P+ G + +   +             
Sbjct  1    RVALVGRPNVGKSTLINALTGAKAIVSDYPGTTRDPNEGRLELKGKQ-------------  47

Query  364  TNFTIADIPGLIEGAHLDRGLGLGFLRHIERAGILAFVVDLSAGDPVQGLQNLWHELSEY  423
                + D PGLIEGA    GLG  FL  IE A ++ FVVD       +G+  L  EL E 
Sbjct  48   --IILVDTPGLIEGASEGEGLGRAFLAIIE-ADLILFVVDSE-----EGITPLDEELLEL  99

Query  424  ERIRNTESVL  433
             R      +L
Sbjct  100  LRENKKPIIL  109


>CDD:460027 pfam01018, GTP1_OBG, GTP1/OBG.  The N-terminal domain of the 
GTPase OBG has the OBG fold, which is formed by three glycine-rich 
regions inserted into a small 8-stranded beta-sandwich 
these regions form six left-handed collagen-like helices packed 
and H-bonded together.
Length=155

 Score = 99.7 bits (250),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 26/109 (24%)

Query  81   DKCRSTIYAGSGGNGCVSFLREKYIEEGPPNGGDGGSGGS-------------IYIQAVE  127
            D+ +  + AG GGNGCVSF REKY+                            + + A E
Sbjct  2    DRAKIKVKAGDGGNGCVSFRREKYVP-------------KGGPDGGDGGRGGDVILVADE  48

Query  128  GITSLHKLARRGVIKAGRGKNGQGKSKGGRRGEDVLLQVPVGTVVREVD  176
             + +L     +   KA  G+NG GK+  G+ GED++++VPVGTVV++ +
Sbjct  49   NLNTLLDFRYKRHFKAENGENGGGKNCHGKNGEDLIIKVPVGTVVKDAE  97



Lambda      K        H        a         alpha
   0.316    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 696403448


Query= TCONS_00002705

Length=571


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 715831012


Query= TCONS_00007924

Length=375


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00002706

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461036 pfam03746, LamB_YcsF, LamB/YcsF family. This family in...  359     5e-126


>CDD:461036 pfam03746, LamB_YcsF, LamB/YcsF family.  This family includes 
LamB. The lam locus of Aspergillus nidulans consists of two 
divergently transcribed genes, lamA and lamB, involved in the 
utilisation of lactams such as 2-pyrrolidinone. Both genes 
are under the control of the positive regulatory gene amdR 
and are subject to carbon and nitrogen metabolite repression. 
The exact molecular function of the proteins in this family 
is unknown.
Length=238

 Score = 359 bits (923),  Expect = 5e-126, Method: Composition-based stats.
 Identities = 116/238 (49%), Positives = 148/238 (62%), Gaps = 9/238 (4%)

Query  93   INCDMGEAYGNWTCGPDLELLPMIDIANIACGFHGGDPLIMMETVRNCKAHNVRIGAHPG  152
            +NCD+GE +G W  G D  LLP+I  ANIACGFH GDPL+M  TVR  K H V IGAHPG
Sbjct  2    LNCDLGEGFGAWKMGDDEALLPLITSANIACGFHAGDPLVMRRTVRLAKEHGVAIGAHPG  61

Query  153  LPDLQGFGRREMKLSPEELTAITIYQVGALQGFLDREGVPLHHVKPHGVLYGMMCRDYEV  212
             PDLQGFGRREM LSPEEL A+ +YQ+GALQ F   EGV L HVKPHG LY M  RD E+
Sbjct  62   YPDLQGFGRREMDLSPEELYALVLYQIGALQAFARAEGVRLQHVKPHGALYNMAARDEEL  121

Query  213  AKAVMLGIPK---GVPVFGLAGTQMEKAANDLGIEFWAELYGDVKYDSNGMLVIDRKK--  267
            A+AV   +      +P+ GLAG+++E+AA + G+   AE + D  Y ++G LV   +   
Sbjct  122  ARAVAEAVKAVDPSLPLLGLAGSELERAAEEAGLRVAAEAFADRAYTADGTLVPRSQPGA  181

Query  268  KPWNLADVEKHVRQQIEEQSVTAVDGTVVQLPLKTYPVSICCHSDSPGCVDIIRTTRK  325
               +  +    V + + E  VTA+DG  + L       SIC H D+PG V++ R  R 
Sbjct  182  VIHDPEEAAARVLRMVTEGKVTAIDGKEIPLR----ADSICVHGDTPGAVELARAIRA  235



Lambda      K        H        a         alpha
   0.321    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00002707

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461036 pfam03746, LamB_YcsF, LamB/YcsF family. This family in...  359     5e-126


>CDD:461036 pfam03746, LamB_YcsF, LamB/YcsF family.  This family includes 
LamB. The lam locus of Aspergillus nidulans consists of two 
divergently transcribed genes, lamA and lamB, involved in the 
utilisation of lactams such as 2-pyrrolidinone. Both genes 
are under the control of the positive regulatory gene amdR 
and are subject to carbon and nitrogen metabolite repression. 
The exact molecular function of the proteins in this family 
is unknown.
Length=238

 Score = 359 bits (923),  Expect = 5e-126, Method: Composition-based stats.
 Identities = 116/238 (49%), Positives = 148/238 (62%), Gaps = 9/238 (4%)

Query  93   INCDMGEAYGNWTCGPDLELLPMIDIANIACGFHGGDPLIMMETVRNCKAHNVRIGAHPG  152
            +NCD+GE +G W  G D  LLP+I  ANIACGFH GDPL+M  TVR  K H V IGAHPG
Sbjct  2    LNCDLGEGFGAWKMGDDEALLPLITSANIACGFHAGDPLVMRRTVRLAKEHGVAIGAHPG  61

Query  153  LPDLQGFGRREMKLSPEELTAITIYQVGALQGFLDREGVPLHHVKPHGVLYGMMCRDYEV  212
             PDLQGFGRREM LSPEEL A+ +YQ+GALQ F   EGV L HVKPHG LY M  RD E+
Sbjct  62   YPDLQGFGRREMDLSPEELYALVLYQIGALQAFARAEGVRLQHVKPHGALYNMAARDEEL  121

Query  213  AKAVMLGIPK---GVPVFGLAGTQMEKAANDLGIEFWAELYGDVKYDSNGMLVIDRKK--  267
            A+AV   +      +P+ GLAG+++E+AA + G+   AE + D  Y ++G LV   +   
Sbjct  122  ARAVAEAVKAVDPSLPLLGLAGSELERAAEEAGLRVAAEAFADRAYTADGTLVPRSQPGA  181

Query  268  KPWNLADVEKHVRQQIEEQSVTAVDGTVVQLPLKTYPVSICCHSDSPGCVDIIRTTRK  325
               +  +    V + + E  VTA+DG  + L       SIC H D+PG V++ R  R 
Sbjct  182  VIHDPEEAAARVLRMVTEGKVTAIDGKEIPLR----ADSICVHGDTPGAVELARAIRA  235



Lambda      K        H        a         alpha
   0.321    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00007925

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461036 pfam03746, LamB_YcsF, LamB/YcsF family. This family in...  305     6e-107


>CDD:461036 pfam03746, LamB_YcsF, LamB/YcsF family.  This family includes 
LamB. The lam locus of Aspergillus nidulans consists of two 
divergently transcribed genes, lamA and lamB, involved in the 
utilisation of lactams such as 2-pyrrolidinone. Both genes 
are under the control of the positive regulatory gene amdR 
and are subject to carbon and nitrogen metabolite repression. 
The exact molecular function of the proteins in this family 
is unknown.
Length=238

 Score = 305 bits (785),  Expect = 6e-107, Method: Composition-based stats.
 Identities = 104/215 (48%), Positives = 132/215 (61%), Gaps = 9/215 (4%)

Query  2    IDIANIACGFHGGDPLIMMETVRNCKAHNVRIGAHPGLPDLQGFGRREMKLSPEELTAIT  61
            I  ANIACGFH GDPL+M  TVR  K H V IGAHPG PDLQGFGRREM LSPEEL A+ 
Sbjct  25   ITSANIACGFHAGDPLVMRRTVRLAKEHGVAIGAHPGYPDLQGFGRREMDLSPEELYALV  84

Query  62   IYQVGALQGFLDREGVPLHHVKPHGVLYGMMCRDYEVAKAVMLGIPK---GVPVFGLAGT  118
            +YQ+GALQ F   EGV L HVKPHG LY M  RD E+A+AV   +      +P+ GLAG+
Sbjct  85   LYQIGALQAFARAEGVRLQHVKPHGALYNMAARDEELARAVAEAVKAVDPSLPLLGLAGS  144

Query  119  QMEKAANDLGIEFWAELYGDVKYDSNGMLVIDRKK--KPWNLADVEKHVRQQIEEQSVTA  176
            ++E+AA + G+   AE + D  Y ++G LV   +      +  +    V + + E  VTA
Sbjct  145  ELERAAEEAGLRVAAEAFADRAYTADGTLVPRSQPGAVIHDPEEAAARVLRMVTEGKVTA  204

Query  177  VDGTVVQLPLKTYPVSICCHSDSPGCVDIIRTTRK  211
            +DG  + L       SIC H D+PG V++ R  R 
Sbjct  205  IDGKEIPLR----ADSICVHGDTPGAVELARAIRA  235



Lambda      K        H        a         alpha
   0.321    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00007926

Length=333


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00002708

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461036 pfam03746, LamB_YcsF, LamB/YcsF family. This family in...  305     6e-107


>CDD:461036 pfam03746, LamB_YcsF, LamB/YcsF family.  This family includes 
LamB. The lam locus of Aspergillus nidulans consists of two 
divergently transcribed genes, lamA and lamB, involved in the 
utilisation of lactams such as 2-pyrrolidinone. Both genes 
are under the control of the positive regulatory gene amdR 
and are subject to carbon and nitrogen metabolite repression. 
The exact molecular function of the proteins in this family 
is unknown.
Length=238

 Score = 305 bits (785),  Expect = 6e-107, Method: Composition-based stats.
 Identities = 104/215 (48%), Positives = 132/215 (61%), Gaps = 9/215 (4%)

Query  2    IDIANIACGFHGGDPLIMMETVRNCKAHNVRIGAHPGLPDLQGFGRREMKLSPEELTAIT  61
            I  ANIACGFH GDPL+M  TVR  K H V IGAHPG PDLQGFGRREM LSPEEL A+ 
Sbjct  25   ITSANIACGFHAGDPLVMRRTVRLAKEHGVAIGAHPGYPDLQGFGRREMDLSPEELYALV  84

Query  62   IYQVGALQGFLDREGVPLHHVKPHGVLYGMMCRDYEVAKAVMLGIPK---GVPVFGLAGT  118
            +YQ+GALQ F   EGV L HVKPHG LY M  RD E+A+AV   +      +P+ GLAG+
Sbjct  85   LYQIGALQAFARAEGVRLQHVKPHGALYNMAARDEELARAVAEAVKAVDPSLPLLGLAGS  144

Query  119  QMEKAANDLGIEFWAELYGDVKYDSNGMLVIDRKK--KPWNLADVEKHVRQQIEEQSVTA  176
            ++E+AA + G+   AE + D  Y ++G LV   +      +  +    V + + E  VTA
Sbjct  145  ELERAAEEAGLRVAAEAFADRAYTADGTLVPRSQPGAVIHDPEEAAARVLRMVTEGKVTA  204

Query  177  VDGTVVQLPLKTYPVSICCHSDSPGCVDIIRTTRK  211
            +DG  + L       SIC H D+PG V++ R  R 
Sbjct  205  IDGKEIPLR----ADSICVHGDTPGAVELARAIRA  235



Lambda      K        H        a         alpha
   0.321    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00002709

Length=302


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00002710

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00002711

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00002712

Length=375


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00002713

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          88.4    2e-22
CDD:465297 pfam16884, ADH_N_2, N-terminal domain of oxidoreductas...  79.2    3e-19


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 88.4 bits (220),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 44/123 (36%), Positives = 61/123 (50%), Gaps = 8/123 (7%)

Query  115  AVGQLVGQLAKHEGLKVIGSVGSDEKLEYITKDLGFDGGFNYKKEKPADALARLA-PQGI  173
             VG    QLAK  G KVI   GS+EKLE   K+LG D   N K+    + +  L   +G+
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELA-KELGADHVINPKETDLVEEIKELTGGKGV  59

Query  174  DIYYENVGGEH-LEAALDAMNNFGRVVVCGLISQYNTAPYPIKNIHNVLIKRIDMRGFIV  232
            D+ ++ VG    LE AL  +   GRVVV GL       P P+  +   L+K + + G  +
Sbjct  60   DVVFDCVGSPATLEQALKLLRPGGRVVVVGLP--GGPLPLPLAPL---LLKELTILGSFL  114

Query  233  SDP  235
              P
Sbjct  115  GSP  117


>CDD:465297 pfam16884, ADH_N_2, N-terminal domain of oxidoreductase.  N-terminal 
region of oxidoreductase and prostaglandin reductase 
and alcohol dehydrogenase.
Length=108

 Score = 79.2 bits (196),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 27/65 (42%), Positives = 37/65 (57%), Gaps = 2/65 (3%)

Query  1    MRGRMRPAHVKSYSPAFELGKPIDSTTIAKVLRSNNASFKEGDLVIGFVPIQEYIVLDGS  60
            MRGRM     KSY P  ELG  +    + +V+ SNN  F  GDLV+G +  Q+Y V DG 
Sbjct  46   MRGRMND--AKSYVPPVELGDVMRGGAVGEVVESNNPDFPVGDLVLGMLGWQDYAVSDGK  103

Query  61   QVARI  65
             + ++
Sbjct  104  GLTKV  108



Lambda      K        H        a         alpha
   0.317    0.139    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00002714

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460586 pfam02545, Maf, Maf-like protein. Maf is a putative in...  212     2e-69


>CDD:460586 pfam02545, Maf, Maf-like protein.  Maf is a putative inhibitor 
of septum formation in eukaryotes, bacteria, and archaea.
Length=174

 Score = 212 bits (543),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 88/201 (44%), Positives = 115/201 (57%), Gaps = 28/201 (14%)

Query  116  VILASASPRRRQILSLLGLPFEVIPSDAVEDFPK-TMEPFEYVLATATKKAQAVYSAEIN  174
            +ILASASPRRR++L  LG+ FEV+PSD  E   K    P EYVL  A  KA+A+      
Sbjct  1    LILASASPRRRELLEQLGIEFEVVPSDIDETPLKEDPAPEEYVLRLARAKAEAL------  54

Query  175  NEEKGEPALILAADTVVVDNLSGSILEKPRSEAQHIAMLKMLRDNRMHKVYTAMVAMAPL  234
                     ++ ADTVVV      IL KP+ E +  AMLK L   R H+VYT +  + P 
Sbjct  55   ---------VIGADTVVVL-----ILGKPKDEEEARAMLKRLS-GRTHEVYTGVALINPG  99

Query  235  ESARQPGYALETHIEETDVVFDRDVTDDLIVAYVRTREGADKAGGYGLQGLGSILVESIQ  294
                       + +E T V F R ++D+ I AYV T E  DKAG YG+QGLG+ LVE I+
Sbjct  100  GGTGG-----VSFVETTRVTF-RPLSDEEIEAYVATGEPLDKAGAYGIQGLGAALVERIE  153

Query  295  GSWDNVVGLPLKAALKLIEKV  315
            G + NVVGLPL   L+L+ ++
Sbjct  154  GDYSNVVGLPLIELLRLLREL  174



Lambda      K        H        a         alpha
   0.313    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00007927

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  63.4    6e-13


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 63.4 bits (155),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 23/73 (32%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query  17  LLLEFASLKHATPSGIYMSITPGDPTLWSGVIFVRSG-PYASAVLRFQLRFPDSYPELPP  75
           L  E   L    P GI       +   W   I    G PY   V +  + FP+ YP  PP
Sbjct  2   LQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPP  61

Query  76  IVTFSTDVFHPLI  88
            V F+T ++HP +
Sbjct  62  KVKFTTKIYHPNV  74



Lambda      K        H        a         alpha
   0.314    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 372672612


Query= TCONS_00002715

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00002716

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00002717

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  59.1    1e-11


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 59.1 bits (144),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 20/61 (33%), Positives = 28/61 (46%), Gaps = 1/61 (2%)

Query  18  PSGIYMSITPGDPTLWSGVIFVRSG-PYASAVLRFQLRFPDSYPELPPIVTFSTDVFHPL  76
           P GI       +   W   I    G PY   V +  + FP+ YP  PP V F+T ++HP 
Sbjct  14  PPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPN  73

Query  77  I  77
           +
Sbjct  74  V  74



Lambda      K        H        a         alpha
   0.314    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00002718

Length=310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  59.1    2e-11


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 59.1 bits (144),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 20/61 (33%), Positives = 28/61 (46%), Gaps = 1/61 (2%)

Query  18  PSGIYMSITPGDPTLWSGVIFVRSG-PYASAVLRFQLRFPDSYPELPPIVTFSTDVFHPL  76
           P GI       +   W   I    G PY   V +  + FP+ YP  PP V F+T ++HP 
Sbjct  14  PPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPN  73

Query  77  I  77
           +
Sbjct  74  V  74



Lambda      K        H        a         alpha
   0.314    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 355153814


Query= TCONS_00007929

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465297 pfam16884, ADH_N_2, N-terminal domain of oxidoreductas...  110     1e-30
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          90.4    8e-23


>CDD:465297 pfam16884, ADH_N_2, N-terminal domain of oxidoreductase.  N-terminal 
region of oxidoreductase and prostaglandin reductase 
and alcohol dehydrogenase.
Length=108

 Score = 110 bits (277),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 8/115 (7%)

Query  5    KALVFKKVPEGYPVPGEHLTIEPVEYDANTPAPENG-VVLQSLYTSFDPYMRGRMRPAHV  63
            K  +  K PEG P P     +   E     P   +G V++++LY S DPYMRGRM     
Sbjct  1    KQWLLAKRPEGVPTP-SDFELVEAE----LPELGDGEVLVRTLYLSVDPYMRGRMND--A  53

Query  64   KSYSPAFELGKPIDSTTIAKVLRSNNASFKEGDLVIGFVPIQEYIVLDGSQVARI  118
            KSY P  ELG  +    + +V+ SNN  F  GDLV+G +  Q+Y V DG  + ++
Sbjct  54   KSYVPPVELGDVMRGGAVGEVVESNNPDFPVGDLVLGMLGWQDYAVSDGKGLTKV  108


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 90.4 bits (225),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 44/123 (36%), Positives = 61/123 (50%), Gaps = 8/123 (7%)

Query  168  AVGQLVGQLAKHEGLKVIGSVGSDEKLEYITKDLGFDGGFNYKKEKPADALARLA-PQGI  226
             VG    QLAK  G KVI   GS+EKLE   K+LG D   N K+    + +  L   +G+
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELA-KELGADHVINPKETDLVEEIKELTGGKGV  59

Query  227  DIYYENVGGEH-LEAALDAMNNFGRVVVCGLISQYNTAPYPIKNIHNVLIKRIDMRGFIV  285
            D+ ++ VG    LE AL  +   GRVVV GL       P P+  +   L+K + + G  +
Sbjct  60   DVVFDCVGSPATLEQALKLLRPGGRVVVVGLP--GGPLPLPLAPL---LLKELTILGSFL  114

Query  286  SDP  288
              P
Sbjct  115  GSP  117



Lambda      K        H        a         alpha
   0.316    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00002721

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465297 pfam16884, ADH_N_2, N-terminal domain of oxidoreductas...  110     1e-30
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          90.4    8e-23


>CDD:465297 pfam16884, ADH_N_2, N-terminal domain of oxidoreductase.  N-terminal 
region of oxidoreductase and prostaglandin reductase 
and alcohol dehydrogenase.
Length=108

 Score = 110 bits (277),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 8/115 (7%)

Query  5    KALVFKKVPEGYPVPGEHLTIEPVEYDANTPAPENG-VVLQSLYTSFDPYMRGRMRPAHV  63
            K  +  K PEG P P     +   E     P   +G V++++LY S DPYMRGRM     
Sbjct  1    KQWLLAKRPEGVPTP-SDFELVEAE----LPELGDGEVLVRTLYLSVDPYMRGRMND--A  53

Query  64   KSYSPAFELGKPIDSTTIAKVLRSNNASFKEGDLVIGFVPIQEYIVLDGSQVARI  118
            KSY P  ELG  +    + +V+ SNN  F  GDLV+G +  Q+Y V DG  + ++
Sbjct  54   KSYVPPVELGDVMRGGAVGEVVESNNPDFPVGDLVLGMLGWQDYAVSDGKGLTKV  108


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 90.4 bits (225),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 44/123 (36%), Positives = 61/123 (50%), Gaps = 8/123 (7%)

Query  168  AVGQLVGQLAKHEGLKVIGSVGSDEKLEYITKDLGFDGGFNYKKEKPADALARLA-PQGI  226
             VG    QLAK  G KVI   GS+EKLE   K+LG D   N K+    + +  L   +G+
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELA-KELGADHVINPKETDLVEEIKELTGGKGV  59

Query  227  DIYYENVGGEH-LEAALDAMNNFGRVVVCGLISQYNTAPYPIKNIHNVLIKRIDMRGFIV  285
            D+ ++ VG    LE AL  +   GRVVV GL       P P+  +   L+K + + G  +
Sbjct  60   DVVFDCVGSPATLEQALKLLRPGGRVVVVGLP--GGPLPLPLAPL---LLKELTILGSFL  114

Query  286  SDP  288
              P
Sbjct  115  GSP  117



Lambda      K        H        a         alpha
   0.316    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00007930

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465297 pfam16884, ADH_N_2, N-terminal domain of oxidoreductas...  110     1e-30
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          90.4    8e-23


>CDD:465297 pfam16884, ADH_N_2, N-terminal domain of oxidoreductase.  N-terminal 
region of oxidoreductase and prostaglandin reductase 
and alcohol dehydrogenase.
Length=108

 Score = 110 bits (277),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 8/115 (7%)

Query  5    KALVFKKVPEGYPVPGEHLTIEPVEYDANTPAPENG-VVLQSLYTSFDPYMRGRMRPAHV  63
            K  +  K PEG P P     +   E     P   +G V++++LY S DPYMRGRM     
Sbjct  1    KQWLLAKRPEGVPTP-SDFELVEAE----LPELGDGEVLVRTLYLSVDPYMRGRMND--A  53

Query  64   KSYSPAFELGKPIDSTTIAKVLRSNNASFKEGDLVIGFVPIQEYIVLDGSQVARI  118
            KSY P  ELG  +    + +V+ SNN  F  GDLV+G +  Q+Y V DG  + ++
Sbjct  54   KSYVPPVELGDVMRGGAVGEVVESNNPDFPVGDLVLGMLGWQDYAVSDGKGLTKV  108


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 90.4 bits (225),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 44/123 (36%), Positives = 61/123 (50%), Gaps = 8/123 (7%)

Query  168  AVGQLVGQLAKHEGLKVIGSVGSDEKLEYITKDLGFDGGFNYKKEKPADALARLA-PQGI  226
             VG    QLAK  G KVI   GS+EKLE   K+LG D   N K+    + +  L   +G+
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELA-KELGADHVINPKETDLVEEIKELTGGKGV  59

Query  227  DIYYENVGGEH-LEAALDAMNNFGRVVVCGLISQYNTAPYPIKNIHNVLIKRIDMRGFIV  285
            D+ ++ VG    LE AL  +   GRVVV GL       P P+  +   L+K + + G  +
Sbjct  60   DVVFDCVGSPATLEQALKLLRPGGRVVVVGLP--GGPLPLPLAPL---LLKELTILGSFL  114

Query  286  SDP  288
              P
Sbjct  115  GSP  117



Lambda      K        H        a         alpha
   0.316    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00002722

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  172     8e-51
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  82.3    2e-19


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 172 bits (437),  Expect = 8e-51, Method: Composition-based stats.
 Identities = 75/187 (40%), Positives = 108/187 (58%), Gaps = 23/187 (12%)

Query  109  TDVQSQTLREILQGDDVLAQAKTGTGKTLAFLTPVFQNIMKDPSLKGLNWRRSQASSSDI  168
            T +Q++ +  IL+G DVL QA TG+GKTLAFL P  + + K                +  
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK--------------LDNGP  46

Query  169  RAIIISPTRELAEQIAVEARRLAAHSGVIVQTAVGGTQKREGLRRIQREGCHVLIGTPGR  228
            +A++++PTRELAEQI  E ++L    G+ V + +GG  ++E L +++  G  +L+GTPGR
Sbjct  47   QALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK--GPDILVGTPGR  104

Query  229  LKDVLSDSYNGVTAPNLSTLVLDEADRLLDDGFSDAIIDIQRLLPDPMKVDRQTLMFSAT  288
            L D+L +        NL  LVLDEA RLLD GF   + +I R LP      RQ L+ SAT
Sbjct  105  LLDLLQER---KLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPK----KRQILLLSAT  157

Query  289  VPREVMQ  295
            +PR +  
Sbjct  158  LPRNLED  164


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 82.3 bits (204),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 48/91 (53%), Gaps = 1/91 (1%)

Query  373  LVYETFRNIVEQRHHPLRR-VRVYEIHSQLTQARRTRSSDFFRAAKSAILFSSDVTARGM  431
            L++   +  +E      +  ++V  +H  L+Q  R    + FR  K  +L ++DV  RG+
Sbjct  19   LIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGL  78

Query  432  DFPDVTHVIQVSIPRDRATYIHRLGRTARAN  462
            D PDV  VI   +P + A+YI R+GR  RA 
Sbjct  79   DLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00002723

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00002733

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  172     8e-51
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  82.3    2e-19


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 172 bits (437),  Expect = 8e-51, Method: Composition-based stats.
 Identities = 75/187 (40%), Positives = 108/187 (58%), Gaps = 23/187 (12%)

Query  109  TDVQSQTLREILQGDDVLAQAKTGTGKTLAFLTPVFQNIMKDPSLKGLNWRRSQASSSDI  168
            T +Q++ +  IL+G DVL QA TG+GKTLAFL P  + + K                +  
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK--------------LDNGP  46

Query  169  RAIIISPTRELAEQIAVEARRLAAHSGVIVQTAVGGTQKREGLRRIQREGCHVLIGTPGR  228
            +A++++PTRELAEQI  E ++L    G+ V + +GG  ++E L +++  G  +L+GTPGR
Sbjct  47   QALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK--GPDILVGTPGR  104

Query  229  LKDVLSDSYNGVTAPNLSTLVLDEADRLLDDGFSDAIIDIQRLLPDPMKVDRQTLMFSAT  288
            L D+L +        NL  LVLDEA RLLD GF   + +I R LP      RQ L+ SAT
Sbjct  105  LLDLLQER---KLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPK----KRQILLLSAT  157

Query  289  VPREVMQ  295
            +PR +  
Sbjct  158  LPRNLED  164


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 82.3 bits (204),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 48/91 (53%), Gaps = 1/91 (1%)

Query  373  LVYETFRNIVEQRHHPLRR-VRVYEIHSQLTQARRTRSSDFFRAAKSAILFSSDVTARGM  431
            L++   +  +E      +  ++V  +H  L+Q  R    + FR  K  +L ++DV  RG+
Sbjct  19   LIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGL  78

Query  432  DFPDVTHVIQVSIPRDRATYIHRLGRTARAN  462
            D PDV  VI   +P + A+YI R+GR  RA 
Sbjct  79   DLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00002724

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  172     1e-51
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  81.9    2e-19


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 172 bits (438),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 75/187 (40%), Positives = 108/187 (58%), Gaps = 23/187 (12%)

Query  7    TDVQSQTLREILQGDDVLAQAKTGTGKTLAFLTPVFQNIMKDPSLKGLNWRRSQASSSDI  66
            T +Q++ +  IL+G DVL QA TG+GKTLAFL P  + + K                +  
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK--------------LDNGP  46

Query  67   RAIIISPTRELAEQIAVEARRLAAHSGVIVQTAVGGTQKREGLRRIQREGCHVLIGTPGR  126
            +A++++PTRELAEQI  E ++L    G+ V + +GG  ++E L +++  G  +L+GTPGR
Sbjct  47   QALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK--GPDILVGTPGR  104

Query  127  LKDVLSDSYNGVTAPNLSTLVLDEADRLLDDGFSDAIIDIQRLLPDPMKVDRQTLMFSAT  186
            L D+L +        NL  LVLDEA RLLD GF   + +I R LP      RQ L+ SAT
Sbjct  105  LLDLLQER---KLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPK----KRQILLLSAT  157

Query  187  VPREVMQ  193
            +PR +  
Sbjct  158  LPRNLED  164


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 81.9 bits (203),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 48/91 (53%), Gaps = 1/91 (1%)

Query  271  LVYETFRNIVEQRHHPLRR-VRVYEIHSQLTQARRTRSSDFFRAAKSAILFSSDVTARGM  329
            L++   +  +E      +  ++V  +H  L+Q  R    + FR  K  +L ++DV  RG+
Sbjct  19   LIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGL  78

Query  330  DFPDVTHVIQVSIPRDRATYIHRLGRTARAN  360
            D PDV  VI   +P + A+YI R+GR  RA 
Sbjct  79   DLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00002725

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  172     1e-51
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  81.9    2e-19


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 172 bits (438),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 75/187 (40%), Positives = 108/187 (58%), Gaps = 23/187 (12%)

Query  7    TDVQSQTLREILQGDDVLAQAKTGTGKTLAFLTPVFQNIMKDPSLKGLNWRRSQASSSDI  66
            T +Q++ +  IL+G DVL QA TG+GKTLAFL P  + + K                +  
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK--------------LDNGP  46

Query  67   RAIIISPTRELAEQIAVEARRLAAHSGVIVQTAVGGTQKREGLRRIQREGCHVLIGTPGR  126
            +A++++PTRELAEQI  E ++L    G+ V + +GG  ++E L +++  G  +L+GTPGR
Sbjct  47   QALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK--GPDILVGTPGR  104

Query  127  LKDVLSDSYNGVTAPNLSTLVLDEADRLLDDGFSDAIIDIQRLLPDPMKVDRQTLMFSAT  186
            L D+L +        NL  LVLDEA RLLD GF   + +I R LP      RQ L+ SAT
Sbjct  105  LLDLLQER---KLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPK----KRQILLLSAT  157

Query  187  VPREVMQ  193
            +PR +  
Sbjct  158  LPRNLED  164


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 81.9 bits (203),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 48/91 (53%), Gaps = 1/91 (1%)

Query  271  LVYETFRNIVEQRHHPLRR-VRVYEIHSQLTQARRTRSSDFFRAAKSAILFSSDVTARGM  329
            L++   +  +E      +  ++V  +H  L+Q  R    + FR  K  +L ++DV  RG+
Sbjct  19   LIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGL  78

Query  330  DFPDVTHVIQVSIPRDRATYIHRLGRTARAN  360
            D PDV  VI   +P + A+YI R+GR  RA 
Sbjct  79   DLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00007931

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  172     8e-51
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  82.3    2e-19


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 172 bits (437),  Expect = 8e-51, Method: Composition-based stats.
 Identities = 75/187 (40%), Positives = 108/187 (58%), Gaps = 23/187 (12%)

Query  109  TDVQSQTLREILQGDDVLAQAKTGTGKTLAFLTPVFQNIMKDPSLKGLNWRRSQASSSDI  168
            T +Q++ +  IL+G DVL QA TG+GKTLAFL P  + + K                +  
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK--------------LDNGP  46

Query  169  RAIIISPTRELAEQIAVEARRLAAHSGVIVQTAVGGTQKREGLRRIQREGCHVLIGTPGR  228
            +A++++PTRELAEQI  E ++L    G+ V + +GG  ++E L +++  G  +L+GTPGR
Sbjct  47   QALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK--GPDILVGTPGR  104

Query  229  LKDVLSDSYNGVTAPNLSTLVLDEADRLLDDGFSDAIIDIQRLLPDPMKVDRQTLMFSAT  288
            L D+L +        NL  LVLDEA RLLD GF   + +I R LP      RQ L+ SAT
Sbjct  105  LLDLLQER---KLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPK----KRQILLLSAT  157

Query  289  VPREVMQ  295
            +PR +  
Sbjct  158  LPRNLED  164


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 82.3 bits (204),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 48/91 (53%), Gaps = 1/91 (1%)

Query  373  LVYETFRNIVEQRHHPLRR-VRVYEIHSQLTQARRTRSSDFFRAAKSAILFSSDVTARGM  431
            L++   +  +E      +  ++V  +H  L+Q  R    + FR  K  +L ++DV  RG+
Sbjct  19   LIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGL  78

Query  432  DFPDVTHVIQVSIPRDRATYIHRLGRTARAN  462
            D PDV  VI   +P + A+YI R+GR  RA 
Sbjct  79   DLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00002728

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  172     8e-51
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  82.3    2e-19


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 172 bits (437),  Expect = 8e-51, Method: Composition-based stats.
 Identities = 75/187 (40%), Positives = 108/187 (58%), Gaps = 23/187 (12%)

Query  109  TDVQSQTLREILQGDDVLAQAKTGTGKTLAFLTPVFQNIMKDPSLKGLNWRRSQASSSDI  168
            T +Q++ +  IL+G DVL QA TG+GKTLAFL P  + + K                +  
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK--------------LDNGP  46

Query  169  RAIIISPTRELAEQIAVEARRLAAHSGVIVQTAVGGTQKREGLRRIQREGCHVLIGTPGR  228
            +A++++PTRELAEQI  E ++L    G+ V + +GG  ++E L +++  G  +L+GTPGR
Sbjct  47   QALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK--GPDILVGTPGR  104

Query  229  LKDVLSDSYNGVTAPNLSTLVLDEADRLLDDGFSDAIIDIQRLLPDPMKVDRQTLMFSAT  288
            L D+L +        NL  LVLDEA RLLD GF   + +I R LP      RQ L+ SAT
Sbjct  105  LLDLLQER---KLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPK----KRQILLLSAT  157

Query  289  VPREVMQ  295
            +PR +  
Sbjct  158  LPRNLED  164


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 82.3 bits (204),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 48/91 (53%), Gaps = 1/91 (1%)

Query  373  LVYETFRNIVEQRHHPLRR-VRVYEIHSQLTQARRTRSSDFFRAAKSAILFSSDVTARGM  431
            L++   +  +E      +  ++V  +H  L+Q  R    + FR  K  +L ++DV  RG+
Sbjct  19   LIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGL  78

Query  432  DFPDVTHVIQVSIPRDRATYIHRLGRTARAN  462
            D PDV  VI   +P + A+YI R+GR  RA 
Sbjct  79   DLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00002727

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  172     8e-51
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  82.3    2e-19


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 172 bits (437),  Expect = 8e-51, Method: Composition-based stats.
 Identities = 75/187 (40%), Positives = 108/187 (58%), Gaps = 23/187 (12%)

Query  109  TDVQSQTLREILQGDDVLAQAKTGTGKTLAFLTPVFQNIMKDPSLKGLNWRRSQASSSDI  168
            T +Q++ +  IL+G DVL QA TG+GKTLAFL P  + + K                +  
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK--------------LDNGP  46

Query  169  RAIIISPTRELAEQIAVEARRLAAHSGVIVQTAVGGTQKREGLRRIQREGCHVLIGTPGR  228
            +A++++PTRELAEQI  E ++L    G+ V + +GG  ++E L +++  G  +L+GTPGR
Sbjct  47   QALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK--GPDILVGTPGR  104

Query  229  LKDVLSDSYNGVTAPNLSTLVLDEADRLLDDGFSDAIIDIQRLLPDPMKVDRQTLMFSAT  288
            L D+L +        NL  LVLDEA RLLD GF   + +I R LP      RQ L+ SAT
Sbjct  105  LLDLLQER---KLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPK----KRQILLLSAT  157

Query  289  VPREVMQ  295
            +PR +  
Sbjct  158  LPRNLED  164


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 82.3 bits (204),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 48/91 (53%), Gaps = 1/91 (1%)

Query  373  LVYETFRNIVEQRHHPLRR-VRVYEIHSQLTQARRTRSSDFFRAAKSAILFSSDVTARGM  431
            L++   +  +E      +  ++V  +H  L+Q  R    + FR  K  +L ++DV  RG+
Sbjct  19   LIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGL  78

Query  432  DFPDVTHVIQVSIPRDRATYIHRLGRTARAN  462
            D PDV  VI   +P + A+YI R+GR  RA 
Sbjct  79   DLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0726    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00002730

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  172     8e-51
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  82.3    2e-19


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 172 bits (437),  Expect = 8e-51, Method: Composition-based stats.
 Identities = 75/187 (40%), Positives = 108/187 (58%), Gaps = 23/187 (12%)

Query  109  TDVQSQTLREILQGDDVLAQAKTGTGKTLAFLTPVFQNIMKDPSLKGLNWRRSQASSSDI  168
            T +Q++ +  IL+G DVL QA TG+GKTLAFL P  + + K                +  
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK--------------LDNGP  46

Query  169  RAIIISPTRELAEQIAVEARRLAAHSGVIVQTAVGGTQKREGLRRIQREGCHVLIGTPGR  228
            +A++++PTRELAEQI  E ++L    G+ V + +GG  ++E L +++  G  +L+GTPGR
Sbjct  47   QALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK--GPDILVGTPGR  104

Query  229  LKDVLSDSYNGVTAPNLSTLVLDEADRLLDDGFSDAIIDIQRLLPDPMKVDRQTLMFSAT  288
            L D+L +        NL  LVLDEA RLLD GF   + +I R LP      RQ L+ SAT
Sbjct  105  LLDLLQER---KLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPK----KRQILLLSAT  157

Query  289  VPREVMQ  295
            +PR +  
Sbjct  158  LPRNLED  164


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 82.3 bits (204),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 48/91 (53%), Gaps = 1/91 (1%)

Query  373  LVYETFRNIVEQRHHPLRR-VRVYEIHSQLTQARRTRSSDFFRAAKSAILFSSDVTARGM  431
            L++   +  +E      +  ++V  +H  L+Q  R    + FR  K  +L ++DV  RG+
Sbjct  19   LIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGL  78

Query  432  DFPDVTHVIQVSIPRDRATYIHRLGRTARAN  462
            D PDV  VI   +P + A+YI R+GR  RA 
Sbjct  79   DLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00002729

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  172     8e-51
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  82.3    2e-19


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 172 bits (437),  Expect = 8e-51, Method: Composition-based stats.
 Identities = 75/187 (40%), Positives = 108/187 (58%), Gaps = 23/187 (12%)

Query  109  TDVQSQTLREILQGDDVLAQAKTGTGKTLAFLTPVFQNIMKDPSLKGLNWRRSQASSSDI  168
            T +Q++ +  IL+G DVL QA TG+GKTLAFL P  + + K                +  
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK--------------LDNGP  46

Query  169  RAIIISPTRELAEQIAVEARRLAAHSGVIVQTAVGGTQKREGLRRIQREGCHVLIGTPGR  228
            +A++++PTRELAEQI  E ++L    G+ V + +GG  ++E L +++  G  +L+GTPGR
Sbjct  47   QALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK--GPDILVGTPGR  104

Query  229  LKDVLSDSYNGVTAPNLSTLVLDEADRLLDDGFSDAIIDIQRLLPDPMKVDRQTLMFSAT  288
            L D+L +        NL  LVLDEA RLLD GF   + +I R LP      RQ L+ SAT
Sbjct  105  LLDLLQER---KLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPK----KRQILLLSAT  157

Query  289  VPREVMQ  295
            +PR +  
Sbjct  158  LPRNLED  164


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 82.3 bits (204),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 48/91 (53%), Gaps = 1/91 (1%)

Query  373  LVYETFRNIVEQRHHPLRR-VRVYEIHSQLTQARRTRSSDFFRAAKSAILFSSDVTARGM  431
            L++   +  +E      +  ++V  +H  L+Q  R    + FR  K  +L ++DV  RG+
Sbjct  19   LIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGL  78

Query  432  DFPDVTHVIQVSIPRDRATYIHRLGRTARAN  462
            D PDV  VI   +P + A+YI R+GR  RA 
Sbjct  79   DLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00002731

Length=1072


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1381894976


Query= TCONS_00007932

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  172     8e-51
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  82.3    2e-19


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 172 bits (437),  Expect = 8e-51, Method: Composition-based stats.
 Identities = 75/187 (40%), Positives = 108/187 (58%), Gaps = 23/187 (12%)

Query  109  TDVQSQTLREILQGDDVLAQAKTGTGKTLAFLTPVFQNIMKDPSLKGLNWRRSQASSSDI  168
            T +Q++ +  IL+G DVL QA TG+GKTLAFL P  + + K                +  
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK--------------LDNGP  46

Query  169  RAIIISPTRELAEQIAVEARRLAAHSGVIVQTAVGGTQKREGLRRIQREGCHVLIGTPGR  228
            +A++++PTRELAEQI  E ++L    G+ V + +GG  ++E L +++  G  +L+GTPGR
Sbjct  47   QALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK--GPDILVGTPGR  104

Query  229  LKDVLSDSYNGVTAPNLSTLVLDEADRLLDDGFSDAIIDIQRLLPDPMKVDRQTLMFSAT  288
            L D+L +        NL  LVLDEA RLLD GF   + +I R LP      RQ L+ SAT
Sbjct  105  LLDLLQER---KLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPK----KRQILLLSAT  157

Query  289  VPREVMQ  295
            +PR +  
Sbjct  158  LPRNLED  164


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 82.3 bits (204),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 48/91 (53%), Gaps = 1/91 (1%)

Query  373  LVYETFRNIVEQRHHPLRR-VRVYEIHSQLTQARRTRSSDFFRAAKSAILFSSDVTARGM  431
            L++   +  +E      +  ++V  +H  L+Q  R    + FR  K  +L ++DV  RG+
Sbjct  19   LIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGL  78

Query  432  DFPDVTHVIQVSIPRDRATYIHRLGRTARAN  462
            D PDV  VI   +P + A+YI R+GR  RA 
Sbjct  79   DLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00002732

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  172     8e-51
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  82.3    2e-19


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 172 bits (437),  Expect = 8e-51, Method: Composition-based stats.
 Identities = 75/187 (40%), Positives = 108/187 (58%), Gaps = 23/187 (12%)

Query  109  TDVQSQTLREILQGDDVLAQAKTGTGKTLAFLTPVFQNIMKDPSLKGLNWRRSQASSSDI  168
            T +Q++ +  IL+G DVL QA TG+GKTLAFL P  + + K                +  
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDK--------------LDNGP  46

Query  169  RAIIISPTRELAEQIAVEARRLAAHSGVIVQTAVGGTQKREGLRRIQREGCHVLIGTPGR  228
            +A++++PTRELAEQI  E ++L    G+ V + +GG  ++E L +++  G  +L+GTPGR
Sbjct  47   QALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK--GPDILVGTPGR  104

Query  229  LKDVLSDSYNGVTAPNLSTLVLDEADRLLDDGFSDAIIDIQRLLPDPMKVDRQTLMFSAT  288
            L D+L +        NL  LVLDEA RLLD GF   + +I R LP      RQ L+ SAT
Sbjct  105  LLDLLQER---KLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPK----KRQILLLSAT  157

Query  289  VPREVMQ  295
            +PR +  
Sbjct  158  LPRNLED  164


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 82.3 bits (204),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 48/91 (53%), Gaps = 1/91 (1%)

Query  373  LVYETFRNIVEQRHHPLRR-VRVYEIHSQLTQARRTRSSDFFRAAKSAILFSSDVTARGM  431
            L++   +  +E      +  ++V  +H  L+Q  R    + FR  K  +L ++DV  RG+
Sbjct  19   LIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGL  78

Query  432  DFPDVTHVIQVSIPRDRATYIHRLGRTARAN  462
            D PDV  VI   +P + A+YI R+GR  RA 
Sbjct  79   DLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00007935

Length=279


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00007936

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00002734

Length=408


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00002735

Length=620


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789057984


Query= TCONS_00002737

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase. This ent...  143     2e-41
CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  102     4e-26
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  66.6    1e-13


>CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=119

 Score = 143 bits (364),  Expect = 2e-41, Method: Composition-based stats.
 Identities = 56/116 (48%), Positives = 73/116 (63%), Gaps = 2/116 (2%)

Query  61   TLTWEDWTPTGIARKM-ILTNGQFPAPPLYVRQGDDVEFLVDNQLPFATAVHFHGIDQMG  119
            T+T+   +P G  R+  I  NGQFP P + VR+GD V   V N L   T++H+HG+ Q G
Sbjct  1    TVTYGTVSPLGGTRQAVIGVNGQFPGPTIRVREGDTVVVNVTNNLDEPTSIHWHGLQQRG  60

Query  120  TPWSDGVPGLSQRPIPSGSSFLYKWNA-GQYGSYMYHAHSRGQIDDGLYGAIYIRP  174
            TPW DGVPG++Q PIP G SF Y++    Q G+Y YH+H+ GQ   GL GAI I  
Sbjct  61   TPWMDGVPGVTQCPIPPGQSFTYRFQVKQQAGTYWYHSHTSGQQAAGLAGAIIIED  116


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 102 bits (255),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 39/116 (34%), Positives = 54/116 (47%), Gaps = 14/116 (12%)

Query  493  ISTRNGTWVDLIFRVTGPLQPPHPIHKHSNKFFVIGQGNGVFNYTSVTEARKHIPESFNL  552
            I+   GT V+ + + T      HP H H + F V+G+G G +            P+++NL
Sbjct  36   ITLPYGTVVEWVLQNTTTG--VHPFHLHGHSFQVLGRGGGPWPEED--------PKTYNL  85

Query  553  NAPQIRDTFATPPSVSGPTWLAIRYHVVNPGAFLIHCHIQIHLSGGMALAILDGVD  608
              P  RDT   PP      W+AIR+   NPG +L HCHI  HL  GM    +    
Sbjct  86   VDPVRRDTVQVPP----GGWVAIRFRADNPGVWLFHCHILWHLDQGMMGQFVVRPG  137


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 66.6 bits (163),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 48/103 (47%), Gaps = 3/103 (3%)

Query  294  TLFSGCTPSQGSTELLLVDPQASYASFDLISAAGVSMPTFSIDEHPMYIYAIDGRYIVPV  353
             L +G   +  +T  L V P  +Y    +I+ A      FSI+ H M +  +DG Y+ P 
Sbjct  39   VLINGKDGASLAT--LTVTPGKTY-RLRIINVALDDSLNFSIEGHKMTVVEVDGVYVNPF  95

Query  354  RVDAITIGNGNRYSVMVKLDKPAGDYTVRVANAGINQLITANA  396
             VD++ I  G RYSV+V  ++  G+Y +  +           A
Sbjct  96   TVDSLDIFPGQRYSVLVTANQDPGNYWIVASPNIPAFDNGTAA  138



Lambda      K        H        a         alpha
   0.320    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784588280


Query= TCONS_00002739

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  99.0    3e-26
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  60.8    5e-12


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 99.0 bits (247),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 39/116 (34%), Positives = 54/116 (47%), Gaps = 14/116 (12%)

Query  164  ISTRNGTWVDLIFRVTGPLQPPHPIHKHSNKFFVIGQGNGVFNYTSVTEARKHIPESFNL  223
            I+   GT V+ + + T      HP H H + F V+G+G G +            P+++NL
Sbjct  36   ITLPYGTVVEWVLQNTTTG--VHPFHLHGHSFQVLGRGGGPWPEED--------PKTYNL  85

Query  224  NAPQIRDTFATPPSVSGPTWLAIRYHVVNPGAFLIHCHIQIHLSGGMALAILDGVD  279
              P  RDT   PP      W+AIR+   NPG +L HCHI  HL  GM    +    
Sbjct  86   VDPVRRDTVQVPP----GGWVAIRFRADNPGVWLFHCHILWHLDQGMMGQFVVRPG  137


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 60.8 bits (148),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (51%), Gaps = 0/65 (0%)

Query  3    TFSIDEHPMYIYAIDGRYIVPVRVDAITIGNGNRYSVMVKLDKPAGDYTVRVANAGINQL  62
             FSI+ H M +  +DG Y+ P  VD++ I  G RYSV+V  ++  G+Y +  +       
Sbjct  74   NFSIEGHKMTVVEVDGVYVNPFTVDSLDIFPGQRYSVLVTANQDPGNYWIVASPNIPAFD  133

Query  63   ITANA  67
                A
Sbjct  134  NGTAA  138



Lambda      K        H        a         alpha
   0.320    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00002738

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  99.0    3e-26
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  60.8    5e-12


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 99.0 bits (247),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 39/116 (34%), Positives = 54/116 (47%), Gaps = 14/116 (12%)

Query  164  ISTRNGTWVDLIFRVTGPLQPPHPIHKHSNKFFVIGQGNGVFNYTSVTEARKHIPESFNL  223
            I+   GT V+ + + T      HP H H + F V+G+G G +            P+++NL
Sbjct  36   ITLPYGTVVEWVLQNTTTG--VHPFHLHGHSFQVLGRGGGPWPEED--------PKTYNL  85

Query  224  NAPQIRDTFATPPSVSGPTWLAIRYHVVNPGAFLIHCHIQIHLSGGMALAILDGVD  279
              P  RDT   PP      W+AIR+   NPG +L HCHI  HL  GM    +    
Sbjct  86   VDPVRRDTVQVPP----GGWVAIRFRADNPGVWLFHCHILWHLDQGMMGQFVVRPG  137


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 60.8 bits (148),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (51%), Gaps = 0/65 (0%)

Query  3    TFSIDEHPMYIYAIDGRYIVPVRVDAITIGNGNRYSVMVKLDKPAGDYTVRVANAGINQL  62
             FSI+ H M +  +DG Y+ P  VD++ I  G RYSV+V  ++  G+Y +  +       
Sbjct  74   NFSIEGHKMTVVEVDGVYVNPFTVDSLDIFPGQRYSVLVTANQDPGNYWIVASPNIPAFD  133

Query  63   ITANA  67
                A
Sbjct  134  NGTAA  138



Lambda      K        H        a         alpha
   0.320    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00002736

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase. This ent...  143     3e-41
CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  101     8e-26
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  66.2    2e-13


>CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=119

 Score = 143 bits (363),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 56/116 (48%), Positives = 73/116 (63%), Gaps = 2/116 (2%)

Query  32   TLTWEDWTPTGIARKM-ILTNGQFPAPPLYVRQGDDVEFLVDNQLPFATAVHFHGIDQMG  90
            T+T+   +P G  R+  I  NGQFP P + VR+GD V   V N L   T++H+HG+ Q G
Sbjct  1    TVTYGTVSPLGGTRQAVIGVNGQFPGPTIRVREGDTVVVNVTNNLDEPTSIHWHGLQQRG  60

Query  91   TPWSDGVPGLSQRPIPSGSSFLYKWNA-GQYGSYMYHAHSRGQIDDGLYGAIYIRP  145
            TPW DGVPG++Q PIP G SF Y++    Q G+Y YH+H+ GQ   GL GAI I  
Sbjct  61   TPWMDGVPGVTQCPIPPGQSFTYRFQVKQQAGTYWYHSHTSGQQAAGLAGAIIIED  116


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 101 bits (253),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 39/116 (34%), Positives = 54/116 (47%), Gaps = 14/116 (12%)

Query  464  ISTRNGTWVDLIFRVTGPLQPPHPIHKHSNKFFVIGQGNGVFNYTSVTEARKHIPESFNL  523
            I+   GT V+ + + T      HP H H + F V+G+G G +            P+++NL
Sbjct  36   ITLPYGTVVEWVLQNTTTG--VHPFHLHGHSFQVLGRGGGPWPEED--------PKTYNL  85

Query  524  NAPQIRDTFATPPSVSGPTWLAIRYHVVNPGAFLIHCHIQIHLSGGMALAILDGVD  579
              P  RDT   PP      W+AIR+   NPG +L HCHI  HL  GM    +    
Sbjct  86   VDPVRRDTVQVPP----GGWVAIRFRADNPGVWLFHCHILWHLDQGMMGQFVVRPG  137


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 66.2 bits (162),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 48/103 (47%), Gaps = 3/103 (3%)

Query  265  TLFSGCTPSQGSTELLLVDPQASYASFDLISAAGVSMPTFSIDEHPMYIYAIDGRYIVPV  324
             L +G   +  +T  L V P  +Y    +I+ A      FSI+ H M +  +DG Y+ P 
Sbjct  39   VLINGKDGASLAT--LTVTPGKTY-RLRIINVALDDSLNFSIEGHKMTVVEVDGVYVNPF  95

Query  325  RVDAITIGNGNRYSVMVKLDKPAGDYTVRVANAGINQLITANA  367
             VD++ I  G RYSV+V  ++  G+Y +  +           A
Sbjct  96   TVDSLDIFPGQRYSVLVTANQDPGNYWIVASPNIPAFDNGTAA  138



Lambda      K        H        a         alpha
   0.320    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 753191712


Query= TCONS_00002740

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase. This ent...  143     2e-41
CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  102     4e-26
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  66.6    1e-13


>CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=119

 Score = 143 bits (364),  Expect = 2e-41, Method: Composition-based stats.
 Identities = 56/116 (48%), Positives = 73/116 (63%), Gaps = 2/116 (2%)

Query  61   TLTWEDWTPTGIARKM-ILTNGQFPAPPLYVRQGDDVEFLVDNQLPFATAVHFHGIDQMG  119
            T+T+   +P G  R+  I  NGQFP P + VR+GD V   V N L   T++H+HG+ Q G
Sbjct  1    TVTYGTVSPLGGTRQAVIGVNGQFPGPTIRVREGDTVVVNVTNNLDEPTSIHWHGLQQRG  60

Query  120  TPWSDGVPGLSQRPIPSGSSFLYKWNA-GQYGSYMYHAHSRGQIDDGLYGAIYIRP  174
            TPW DGVPG++Q PIP G SF Y++    Q G+Y YH+H+ GQ   GL GAI I  
Sbjct  61   TPWMDGVPGVTQCPIPPGQSFTYRFQVKQQAGTYWYHSHTSGQQAAGLAGAIIIED  116


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 102 bits (255),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 39/116 (34%), Positives = 54/116 (47%), Gaps = 14/116 (12%)

Query  493  ISTRNGTWVDLIFRVTGPLQPPHPIHKHSNKFFVIGQGNGVFNYTSVTEARKHIPESFNL  552
            I+   GT V+ + + T      HP H H + F V+G+G G +            P+++NL
Sbjct  36   ITLPYGTVVEWVLQNTTTG--VHPFHLHGHSFQVLGRGGGPWPEED--------PKTYNL  85

Query  553  NAPQIRDTFATPPSVSGPTWLAIRYHVVNPGAFLIHCHIQIHLSGGMALAILDGVD  608
              P  RDT   PP      W+AIR+   NPG +L HCHI  HL  GM    +    
Sbjct  86   VDPVRRDTVQVPP----GGWVAIRFRADNPGVWLFHCHILWHLDQGMMGQFVVRPG  137


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 66.6 bits (163),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 48/103 (47%), Gaps = 3/103 (3%)

Query  294  TLFSGCTPSQGSTELLLVDPQASYASFDLISAAGVSMPTFSIDEHPMYIYAIDGRYIVPV  353
             L +G   +  +T  L V P  +Y    +I+ A      FSI+ H M +  +DG Y+ P 
Sbjct  39   VLINGKDGASLAT--LTVTPGKTY-RLRIINVALDDSLNFSIEGHKMTVVEVDGVYVNPF  95

Query  354  RVDAITIGNGNRYSVMVKLDKPAGDYTVRVANAGINQLITANA  396
             VD++ I  G RYSV+V  ++  G+Y +  +           A
Sbjct  96   TVDSLDIFPGQRYSVLVTANQDPGNYWIVASPNIPAFDNGTAA  138



Lambda      K        H        a         alpha
   0.320    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784588280


Query= TCONS_00002741

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  102     2e-26
CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase. This ent...  83.1    1e-19
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  66.6    1e-13


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 102 bits (256),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 39/116 (34%), Positives = 54/116 (47%), Gaps = 14/116 (12%)

Query  376  ISTRNGTWVDLIFRVTGPLQPPHPIHKHSNKFFVIGQGNGVFNYTSVTEARKHIPESFNL  435
            I+   GT V+ + + T      HP H H + F V+G+G G +            P+++NL
Sbjct  36   ITLPYGTVVEWVLQNTTTG--VHPFHLHGHSFQVLGRGGGPWPEED--------PKTYNL  85

Query  436  NAPQIRDTFATPPSVSGPTWLAIRYHVVNPGAFLIHCHIQIHLSGGMALAILDGVD  491
              P  RDT   PP      W+AIR+   NPG +L HCHI  HL  GM    +    
Sbjct  86   VDPVRRDTVQVPP----GGWVAIRFRADNPGVWLFHCHILWHLDQGMMGQFVVRPG  137


>CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=119

 Score = 83.1 bits (206),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 38/57 (67%), Gaps = 1/57 (2%)

Query  2    GTPWSDGVPGLSQRPIPSGSSFLYKWNA-GQYGSYMYHAHSRGQIDDGLYGAIYIRP  57
            GTPW DGVPG++Q PIP G SF Y++    Q G+Y YH+H+ GQ   GL GAI I  
Sbjct  60   GTPWMDGVPGVTQCPIPPGQSFTYRFQVKQQAGTYWYHSHTSGQQAAGLAGAIIIED  116


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 66.6 bits (163),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 48/103 (47%), Gaps = 3/103 (3%)

Query  177  TLFSGCTPSQGSTELLLVDPQASYASFDLISAAGVSMPTFSIDEHPMYIYAIDGRYIVPV  236
             L +G   +  +T  L V P  +Y    +I+ A      FSI+ H M +  +DG Y+ P 
Sbjct  39   VLINGKDGASLAT--LTVTPGKTY-RLRIINVALDDSLNFSIEGHKMTVVEVDGVYVNPF  95

Query  237  RVDAITIGNGNRYSVMVKLDKPAGDYTVRVANAGINQLITANA  279
             VD++ I  G RYSV+V  ++  G+Y +  +           A
Sbjct  96   TVDSLDIFPGQRYSVLVTANQDPGNYWIVASPNIPAFDNGTAA  138



Lambda      K        H        a         alpha
   0.319    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00007939

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  99.0    3e-26
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  60.8    5e-12


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 99.0 bits (247),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 39/116 (34%), Positives = 54/116 (47%), Gaps = 14/116 (12%)

Query  164  ISTRNGTWVDLIFRVTGPLQPPHPIHKHSNKFFVIGQGNGVFNYTSVTEARKHIPESFNL  223
            I+   GT V+ + + T      HP H H + F V+G+G G +            P+++NL
Sbjct  36   ITLPYGTVVEWVLQNTTTG--VHPFHLHGHSFQVLGRGGGPWPEED--------PKTYNL  85

Query  224  NAPQIRDTFATPPSVSGPTWLAIRYHVVNPGAFLIHCHIQIHLSGGMALAILDGVD  279
              P  RDT   PP      W+AIR+   NPG +L HCHI  HL  GM    +    
Sbjct  86   VDPVRRDTVQVPP----GGWVAIRFRADNPGVWLFHCHILWHLDQGMMGQFVVRPG  137


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 60.8 bits (148),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (51%), Gaps = 0/65 (0%)

Query  3    TFSIDEHPMYIYAIDGRYIVPVRVDAITIGNGNRYSVMVKLDKPAGDYTVRVANAGINQL  62
             FSI+ H M +  +DG Y+ P  VD++ I  G RYSV+V  ++  G+Y +  +       
Sbjct  74   NFSIEGHKMTVVEVDGVYVNPFTVDSLDIFPGQRYSVLVTANQDPGNYWIVASPNIPAFD  133

Query  63   ITANA  67
                A
Sbjct  134  NGTAA  138



Lambda      K        H        a         alpha
   0.320    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00002742

Length=263


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 290477132


Query= TCONS_00002743

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00002744

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  102     2e-26
CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase. This ent...  83.1    1e-19
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  66.6    1e-13


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 102 bits (256),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 39/116 (34%), Positives = 54/116 (47%), Gaps = 14/116 (12%)

Query  376  ISTRNGTWVDLIFRVTGPLQPPHPIHKHSNKFFVIGQGNGVFNYTSVTEARKHIPESFNL  435
            I+   GT V+ + + T      HP H H + F V+G+G G +            P+++NL
Sbjct  36   ITLPYGTVVEWVLQNTTTG--VHPFHLHGHSFQVLGRGGGPWPEED--------PKTYNL  85

Query  436  NAPQIRDTFATPPSVSGPTWLAIRYHVVNPGAFLIHCHIQIHLSGGMALAILDGVD  491
              P  RDT   PP      W+AIR+   NPG +L HCHI  HL  GM    +    
Sbjct  86   VDPVRRDTVQVPP----GGWVAIRFRADNPGVWLFHCHILWHLDQGMMGQFVVRPG  137


>CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=119

 Score = 83.1 bits (206),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 38/57 (67%), Gaps = 1/57 (2%)

Query  2    GTPWSDGVPGLSQRPIPSGSSFLYKWNA-GQYGSYMYHAHSRGQIDDGLYGAIYIRP  57
            GTPW DGVPG++Q PIP G SF Y++    Q G+Y YH+H+ GQ   GL GAI I  
Sbjct  60   GTPWMDGVPGVTQCPIPPGQSFTYRFQVKQQAGTYWYHSHTSGQQAAGLAGAIIIED  116


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 66.6 bits (163),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 48/103 (47%), Gaps = 3/103 (3%)

Query  177  TLFSGCTPSQGSTELLLVDPQASYASFDLISAAGVSMPTFSIDEHPMYIYAIDGRYIVPV  236
             L +G   +  +T  L V P  +Y    +I+ A      FSI+ H M +  +DG Y+ P 
Sbjct  39   VLINGKDGASLAT--LTVTPGKTY-RLRIINVALDDSLNFSIEGHKMTVVEVDGVYVNPF  95

Query  237  RVDAITIGNGNRYSVMVKLDKPAGDYTVRVANAGINQLITANA  279
             VD++ I  G RYSV+V  ++  G+Y +  +           A
Sbjct  96   TVDSLDIFPGQRYSVLVTANQDPGNYWIVASPNIPAFDNGTAA  138



Lambda      K        H        a         alpha
   0.319    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00002745

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase. This ent...  143     3e-41
CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  101     8e-26
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  66.2    2e-13


>CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=119

 Score = 143 bits (363),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 56/116 (48%), Positives = 73/116 (63%), Gaps = 2/116 (2%)

Query  32   TLTWEDWTPTGIARKM-ILTNGQFPAPPLYVRQGDDVEFLVDNQLPFATAVHFHGIDQMG  90
            T+T+   +P G  R+  I  NGQFP P + VR+GD V   V N L   T++H+HG+ Q G
Sbjct  1    TVTYGTVSPLGGTRQAVIGVNGQFPGPTIRVREGDTVVVNVTNNLDEPTSIHWHGLQQRG  60

Query  91   TPWSDGVPGLSQRPIPSGSSFLYKWNA-GQYGSYMYHAHSRGQIDDGLYGAIYIRP  145
            TPW DGVPG++Q PIP G SF Y++    Q G+Y YH+H+ GQ   GL GAI I  
Sbjct  61   TPWMDGVPGVTQCPIPPGQSFTYRFQVKQQAGTYWYHSHTSGQQAAGLAGAIIIED  116


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 101 bits (253),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 39/116 (34%), Positives = 54/116 (47%), Gaps = 14/116 (12%)

Query  464  ISTRNGTWVDLIFRVTGPLQPPHPIHKHSNKFFVIGQGNGVFNYTSVTEARKHIPESFNL  523
            I+   GT V+ + + T      HP H H + F V+G+G G +            P+++NL
Sbjct  36   ITLPYGTVVEWVLQNTTTG--VHPFHLHGHSFQVLGRGGGPWPEED--------PKTYNL  85

Query  524  NAPQIRDTFATPPSVSGPTWLAIRYHVVNPGAFLIHCHIQIHLSGGMALAILDGVD  579
              P  RDT   PP      W+AIR+   NPG +L HCHI  HL  GM    +    
Sbjct  86   VDPVRRDTVQVPP----GGWVAIRFRADNPGVWLFHCHILWHLDQGMMGQFVVRPG  137


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 66.2 bits (162),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 48/103 (47%), Gaps = 3/103 (3%)

Query  265  TLFSGCTPSQGSTELLLVDPQASYASFDLISAAGVSMPTFSIDEHPMYIYAIDGRYIVPV  324
             L +G   +  +T  L V P  +Y    +I+ A      FSI+ H M +  +DG Y+ P 
Sbjct  39   VLINGKDGASLAT--LTVTPGKTY-RLRIINVALDDSLNFSIEGHKMTVVEVDGVYVNPF  95

Query  325  RVDAITIGNGNRYSVMVKLDKPAGDYTVRVANAGINQLITANA  367
             VD++ I  G RYSV+V  ++  G+Y +  +           A
Sbjct  96   TVDSLDIFPGQRYSVLVTANQDPGNYWIVASPNIPAFDNGTAA  138



Lambda      K        H        a         alpha
   0.320    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0726    0.140     1.90     42.6     43.6 

Effective search space used: 753191712


Query= TCONS_00002746

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  99.0    3e-26
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  60.8    5e-12


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 99.0 bits (247),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 39/116 (34%), Positives = 54/116 (47%), Gaps = 14/116 (12%)

Query  164  ISTRNGTWVDLIFRVTGPLQPPHPIHKHSNKFFVIGQGNGVFNYTSVTEARKHIPESFNL  223
            I+   GT V+ + + T      HP H H + F V+G+G G +            P+++NL
Sbjct  36   ITLPYGTVVEWVLQNTTTG--VHPFHLHGHSFQVLGRGGGPWPEED--------PKTYNL  85

Query  224  NAPQIRDTFATPPSVSGPTWLAIRYHVVNPGAFLIHCHIQIHLSGGMALAILDGVD  279
              P  RDT   PP      W+AIR+   NPG +L HCHI  HL  GM    +    
Sbjct  86   VDPVRRDTVQVPP----GGWVAIRFRADNPGVWLFHCHILWHLDQGMMGQFVVRPG  137


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 60.8 bits (148),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (51%), Gaps = 0/65 (0%)

Query  3    TFSIDEHPMYIYAIDGRYIVPVRVDAITIGNGNRYSVMVKLDKPAGDYTVRVANAGINQL  62
             FSI+ H M +  +DG Y+ P  VD++ I  G RYSV+V  ++  G+Y +  +       
Sbjct  74   NFSIEGHKMTVVEVDGVYVNPFTVDSLDIFPGQRYSVLVTANQDPGNYWIVASPNIPAFD  133

Query  63   ITANA  67
                A
Sbjct  134  NGTAA  138



Lambda      K        H        a         alpha
   0.320    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00007940

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  99.0    3e-26
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  60.8    5e-12


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 99.0 bits (247),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 39/116 (34%), Positives = 54/116 (47%), Gaps = 14/116 (12%)

Query  164  ISTRNGTWVDLIFRVTGPLQPPHPIHKHSNKFFVIGQGNGVFNYTSVTEARKHIPESFNL  223
            I+   GT V+ + + T      HP H H + F V+G+G G +            P+++NL
Sbjct  36   ITLPYGTVVEWVLQNTTTG--VHPFHLHGHSFQVLGRGGGPWPEED--------PKTYNL  85

Query  224  NAPQIRDTFATPPSVSGPTWLAIRYHVVNPGAFLIHCHIQIHLSGGMALAILDGVD  279
              P  RDT   PP      W+AIR+   NPG +L HCHI  HL  GM    +    
Sbjct  86   VDPVRRDTVQVPP----GGWVAIRFRADNPGVWLFHCHILWHLDQGMMGQFVVRPG  137


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 60.8 bits (148),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (51%), Gaps = 0/65 (0%)

Query  3    TFSIDEHPMYIYAIDGRYIVPVRVDAITIGNGNRYSVMVKLDKPAGDYTVRVANAGINQL  62
             FSI+ H M +  +DG Y+ P  VD++ I  G RYSV+V  ++  G+Y +  +       
Sbjct  74   NFSIEGHKMTVVEVDGVYVNPFTVDSLDIFPGQRYSVLVTANQDPGNYWIVASPNIPAFD  133

Query  63   ITANA  67
                A
Sbjct  134  NGTAA  138



Lambda      K        H        a         alpha
   0.320    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00002747

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase. This ent...  143     3e-41
CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  101     8e-26
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  66.2    2e-13


>CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=119

 Score = 143 bits (363),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 56/116 (48%), Positives = 73/116 (63%), Gaps = 2/116 (2%)

Query  32   TLTWEDWTPTGIARKM-ILTNGQFPAPPLYVRQGDDVEFLVDNQLPFATAVHFHGIDQMG  90
            T+T+   +P G  R+  I  NGQFP P + VR+GD V   V N L   T++H+HG+ Q G
Sbjct  1    TVTYGTVSPLGGTRQAVIGVNGQFPGPTIRVREGDTVVVNVTNNLDEPTSIHWHGLQQRG  60

Query  91   TPWSDGVPGLSQRPIPSGSSFLYKWNA-GQYGSYMYHAHSRGQIDDGLYGAIYIRP  145
            TPW DGVPG++Q PIP G SF Y++    Q G+Y YH+H+ GQ   GL GAI I  
Sbjct  61   TPWMDGVPGVTQCPIPPGQSFTYRFQVKQQAGTYWYHSHTSGQQAAGLAGAIIIED  116


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 101 bits (253),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 39/116 (34%), Positives = 54/116 (47%), Gaps = 14/116 (12%)

Query  464  ISTRNGTWVDLIFRVTGPLQPPHPIHKHSNKFFVIGQGNGVFNYTSVTEARKHIPESFNL  523
            I+   GT V+ + + T      HP H H + F V+G+G G +            P+++NL
Sbjct  36   ITLPYGTVVEWVLQNTTTG--VHPFHLHGHSFQVLGRGGGPWPEED--------PKTYNL  85

Query  524  NAPQIRDTFATPPSVSGPTWLAIRYHVVNPGAFLIHCHIQIHLSGGMALAILDGVD  579
              P  RDT   PP      W+AIR+   NPG +L HCHI  HL  GM    +    
Sbjct  86   VDPVRRDTVQVPP----GGWVAIRFRADNPGVWLFHCHILWHLDQGMMGQFVVRPG  137


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 66.2 bits (162),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 48/103 (47%), Gaps = 3/103 (3%)

Query  265  TLFSGCTPSQGSTELLLVDPQASYASFDLISAAGVSMPTFSIDEHPMYIYAIDGRYIVPV  324
             L +G   +  +T  L V P  +Y    +I+ A      FSI+ H M +  +DG Y+ P 
Sbjct  39   VLINGKDGASLAT--LTVTPGKTY-RLRIINVALDDSLNFSIEGHKMTVVEVDGVYVNPF  95

Query  325  RVDAITIGNGNRYSVMVKLDKPAGDYTVRVANAGINQLITANA  367
             VD++ I  G RYSV+V  ++  G+Y +  +           A
Sbjct  96   TVDSLDIFPGQRYSVLVTANQDPGNYWIVASPNIPAFDNGTAA  138



Lambda      K        H        a         alpha
   0.320    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 753191712


Query= TCONS_00007941

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  99.0    3e-26
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  60.8    5e-12


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 99.0 bits (247),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 39/116 (34%), Positives = 54/116 (47%), Gaps = 14/116 (12%)

Query  164  ISTRNGTWVDLIFRVTGPLQPPHPIHKHSNKFFVIGQGNGVFNYTSVTEARKHIPESFNL  223
            I+   GT V+ + + T      HP H H + F V+G+G G +            P+++NL
Sbjct  36   ITLPYGTVVEWVLQNTTTG--VHPFHLHGHSFQVLGRGGGPWPEED--------PKTYNL  85

Query  224  NAPQIRDTFATPPSVSGPTWLAIRYHVVNPGAFLIHCHIQIHLSGGMALAILDGVD  279
              P  RDT   PP      W+AIR+   NPG +L HCHI  HL  GM    +    
Sbjct  86   VDPVRRDTVQVPP----GGWVAIRFRADNPGVWLFHCHILWHLDQGMMGQFVVRPG  137


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 60.8 bits (148),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (51%), Gaps = 0/65 (0%)

Query  3    TFSIDEHPMYIYAIDGRYIVPVRVDAITIGNGNRYSVMVKLDKPAGDYTVRVANAGINQL  62
             FSI+ H M +  +DG Y+ P  VD++ I  G RYSV+V  ++  G+Y +  +       
Sbjct  74   NFSIEGHKMTVVEVDGVYVNPFTVDSLDIFPGQRYSVLVTANQDPGNYWIVASPNIPAFD  133

Query  63   ITANA  67
                A
Sbjct  134  NGTAA  138



Lambda      K        H        a         alpha
   0.320    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00007944

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00002748

Length=355


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00002749

Length=630


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00007945

Length=490


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00007946

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00002750

Length=715
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463744 pfam12896, ANAPC4, Anaphase-promoting complex, cycloso...  270     4e-87
CDD:403945 pfam12894, ANAPC4_WD40, Anaphase-promoting complex sub...  138     1e-39


>CDD:463744 pfam12896, ANAPC4, Anaphase-promoting complex, cyclosome, subunit 
4.  Apc4 is one of the larger of the subunits of the anaphase-promoting 
complex or cyclosome. This family represents 
the long domain downstream of the WD40 repeat/s that are present 
on the Apc4 subunits. The anaphase-promoting complex 
is a multiprotein subunit E3 ubiquitin ligase complex that controls 
segregation of chromosomes and exit from mitosis in 
eukaryotes. Results in C.elegans show that the primary essential 
role of the spindle assembly checkpoint is not in the chromosome 
segregation process itself but rather in delaying 
anaphase onset until all chromosomes are properly attached to 
the spindle. the APC/C is likely to be required for all metaphase-to-anaphase 
transitions in a multicellular organism.
Length=203

 Score = 270 bits (693),  Expect = 4e-87, Method: Composition-based stats.
 Identities = 103/203 (51%), Positives = 140/203 (69%), Gaps = 1/203 (0%)

Query  290  HLLTIDLRFITRSGRYLSLLAYKTTQLQNLLRYIGQVQRQIELEWKNAQELPARYMRSIN  349
            HLL +DL F++ SGR L LLA K++QLQ+LLRYI Q  ++++ EWKNA+ELP R +R++ 
Sbjct  1    HLLPLDLPFLSSSGRELHLLASKSSQLQSLLRYINQTLKEMQEEWKNARELPDRKLRNLE  60

Query  350  EDLKEKCHC-DFVTAAYHLVVTGDCFEPLKEFLVDIVGERGHKRWEKAVSSGYENVRRLT  408
            + LKE+      V   YHL++TG    PLKEFLV+ +GERG KRWEKAV S YEN+R+L 
Sbjct  61   DLLKEQGGESSIVQELYHLLLTGHPSPPLKEFLVNQLGERGLKRWEKAVESSYENIRKLV  120

Query  409  HECLLPALERCEVLLSRLIGLSRFQKLSEVLGLETNDLNASVETLDCLHLLCHQILINAN  468
            HE LLPALER  +LLS L GL+++ +  E+LGL+   ++  ++T   L L  H++L   N
Sbjct  121  HEHLLPALERLIILLSELRGLAKWHERYEILGLDPELIDELLDTAGSLLLKAHELLQVIN  180

Query  469  EELAQFIAFSQWLRHEIDMQTAE  491
            EEL  F AF +WLR+ ID    E
Sbjct  181  EELKLFKAFFRWLRYVIDRLADE  203


>CDD:403945 pfam12894, ANAPC4_WD40, Anaphase-promoting complex subunit 4 
WD40 domain.  Apc4 contains an N-terminal propeller-shaped WD40 
domain.The N-terminus of Afi1 serves to stabilize the union 
between Apc4 and Apc5, both of which lie towards the bottom-front 
of the APC,.
Length=91

 Score = 138 bits (351),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 49/106 (46%), Positives = 65/106 (61%), Gaps = 15/106 (14%)

Query  27   LTYCPTMDLIALVTEDEELRVFRLNGQKVFGGSFKGDPYLGEDEADGEIRAVKWKDNGHL  86
            +++CPTMDLIAL TED EL + RLN Q+V+  S         D+ D E+ ++ W+ +G L
Sbjct  1    MSWCPTMDLIALATEDGELLLHRLNWQRVWTLS--------PDKEDLEVTSLAWRPDGKL  52

Query  87   LAVACADDTVRLISAYSGKTVHHYRADQPGAHAQPVSITCLGWGVN  132
            LAV  +D TVRL+ A +GK VHH+ A           ITCLGWG N
Sbjct  53   LAVGYSDGTVRLLDAENGKIVHHFSAGSD-------LITCLGWGEN  91



Lambda      K        H        a         alpha
   0.319    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 903649392


Query= TCONS_00002751

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463744 pfam12896, ANAPC4, Anaphase-promoting complex, cycloso...  194     4e-60


>CDD:463744 pfam12896, ANAPC4, Anaphase-promoting complex, cyclosome, subunit 
4.  Apc4 is one of the larger of the subunits of the anaphase-promoting 
complex or cyclosome. This family represents 
the long domain downstream of the WD40 repeat/s that are present 
on the Apc4 subunits. The anaphase-promoting complex 
is a multiprotein subunit E3 ubiquitin ligase complex that controls 
segregation of chromosomes and exit from mitosis in 
eukaryotes. Results in C.elegans show that the primary essential 
role of the spindle assembly checkpoint is not in the chromosome 
segregation process itself but rather in delaying 
anaphase onset until all chromosomes are properly attached to 
the spindle. the APC/C is likely to be required for all metaphase-to-anaphase 
transitions in a multicellular organism.
Length=203

 Score = 194 bits (495),  Expect = 4e-60, Method: Composition-based stats.
 Identities = 71/148 (48%), Positives = 97/148 (66%), Gaps = 1/148 (1%)

Query  1    MRSINEDLKEKCHC-DFVTAAYHLVVTGDCFEPLKEFLVDIVGERGHKRWEKAVSSGYEN  59
            +R++ + LKE+      V   YHL++TG    PLKEFLV+ +GERG KRWEKAV S YEN
Sbjct  56   LRNLEDLLKEQGGESSIVQELYHLLLTGHPSPPLKEFLVNQLGERGLKRWEKAVESSYEN  115

Query  60   VRRLTHECLLPALERCEVLLSRLIGLSRFQKLSEVLGLETNDLNASVETLDCLHLLCHQI  119
            +R+L HE LLPALER  +LLS L GL+++ +  E+LGL+   ++  ++T   L L  H++
Sbjct  116  IRKLVHEHLLPALERLIILLSELRGLAKWHERYEILGLDPELIDELLDTAGSLLLKAHEL  175

Query  120  LINANEELAQFIAFSQWLRHEIDMQTAE  147
            L   NEEL  F AF +WLR+ ID    E
Sbjct  176  LQVINEELKLFKAFFRWLRYVIDRLADE  203



Lambda      K        H        a         alpha
   0.319    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598144560


Query= TCONS_00002752

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403945 pfam12894, ANAPC4_WD40, Anaphase-promoting complex sub...  139     9e-44


>CDD:403945 pfam12894, ANAPC4_WD40, Anaphase-promoting complex subunit 4 
WD40 domain.  Apc4 contains an N-terminal propeller-shaped WD40 
domain.The N-terminus of Afi1 serves to stabilize the union 
between Apc4 and Apc5, both of which lie towards the bottom-front 
of the APC,.
Length=91

 Score = 139 bits (352),  Expect = 9e-44, Method: Composition-based stats.
 Identities = 49/106 (46%), Positives = 65/106 (61%), Gaps = 15/106 (14%)

Query  27   LTYCPTMDLIALVTEDEELRVFRLNGQKVFGGSFKGDPYLGEDEADGEIRAVKWKDNGHL  86
            +++CPTMDLIAL TED EL + RLN Q+V+  S         D+ D E+ ++ W+ +G L
Sbjct  1    MSWCPTMDLIALATEDGELLLHRLNWQRVWTLS--------PDKEDLEVTSLAWRPDGKL  52

Query  87   LAVACADDTVRLISAYSGKTVHHYRADQPGAHAQPVSITCLGWGVN  132
            LAV  +D TVRL+ A +GK VHH+ A           ITCLGWG N
Sbjct  53   LAVGYSDGTVRLLDAENGKIVHHFSAGSD-------LITCLGWGEN  91



Lambda      K        H        a         alpha
   0.315    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00002753

Length=735
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463744 pfam12896, ANAPC4, Anaphase-promoting complex, cycloso...  273     6e-88
CDD:403945 pfam12894, ANAPC4_WD40, Anaphase-promoting complex sub...  139     9e-40


>CDD:463744 pfam12896, ANAPC4, Anaphase-promoting complex, cyclosome, subunit 
4.  Apc4 is one of the larger of the subunits of the anaphase-promoting 
complex or cyclosome. This family represents 
the long domain downstream of the WD40 repeat/s that are present 
on the Apc4 subunits. The anaphase-promoting complex 
is a multiprotein subunit E3 ubiquitin ligase complex that controls 
segregation of chromosomes and exit from mitosis in 
eukaryotes. Results in C.elegans show that the primary essential 
role of the spindle assembly checkpoint is not in the chromosome 
segregation process itself but rather in delaying 
anaphase onset until all chromosomes are properly attached to 
the spindle. the APC/C is likely to be required for all metaphase-to-anaphase 
transitions in a multicellular organism.
Length=203

 Score = 273 bits (700),  Expect = 6e-88, Method: Composition-based stats.
 Identities = 103/203 (51%), Positives = 140/203 (69%), Gaps = 1/203 (0%)

Query  285  HLLTIDLRFITRSGRYLSLLAYKTTQLQNLLRYIGQVQRQIELEWKNAQELPARYMRSIN  344
            HLL +DL F++ SGR L LLA K++QLQ+LLRYI Q  ++++ EWKNA+ELP R +R++ 
Sbjct  1    HLLPLDLPFLSSSGRELHLLASKSSQLQSLLRYINQTLKEMQEEWKNARELPDRKLRNLE  60

Query  345  EDLKEKCHC-DFVTAAYHLVVTGDCFEPLKEFLVDIVGERGHKRWEKAVSSGYENVRRLT  403
            + LKE+      V   YHL++TG    PLKEFLV+ +GERG KRWEKAV S YEN+R+L 
Sbjct  61   DLLKEQGGESSIVQELYHLLLTGHPSPPLKEFLVNQLGERGLKRWEKAVESSYENIRKLV  120

Query  404  HECLLPALERCEVLLSRLIGLSRFQKLSEVLGLETNDLNASVETLDCLHLLCHQILINAN  463
            HE LLPALER  +LLS L GL+++ +  E+LGL+   ++  ++T   L L  H++L   N
Sbjct  121  HEHLLPALERLIILLSELRGLAKWHERYEILGLDPELIDELLDTAGSLLLKAHELLQVIN  180

Query  464  EELAQFIAFSQWLRHEIDMQTAE  486
            EEL  F AF +WLR+ ID    E
Sbjct  181  EELKLFKAFFRWLRYVIDRLADE  203


>CDD:403945 pfam12894, ANAPC4_WD40, Anaphase-promoting complex subunit 4 
WD40 domain.  Apc4 contains an N-terminal propeller-shaped WD40 
domain.The N-terminus of Afi1 serves to stabilize the union 
between Apc4 and Apc5, both of which lie towards the bottom-front 
of the APC,.
Length=91

 Score = 139 bits (352),  Expect = 9e-40, Method: Composition-based stats.
 Identities = 49/106 (46%), Positives = 65/106 (61%), Gaps = 15/106 (14%)

Query  27   LTYCPTMDLIALVTEDEELRVFRLNGQKVFGGSFKGDPYLGEDEADGEIRAVKWKDNGHL  86
            +++CPTMDLIAL TED EL + RLN Q+V+  S         D+ D E+ ++ W+ +G L
Sbjct  1    MSWCPTMDLIALATEDGELLLHRLNWQRVWTLS--------PDKEDLEVTSLAWRPDGKL  52

Query  87   LAVACADDTVRLISAYSGKTVHHYRADQPGAHAQPVSITCLGWGVN  132
            LAV  +D TVRL+ A +GK VHH+ A           ITCLGWG N
Sbjct  53   LAVGYSDGTVRLLDAENGKIVHHFSAGSD-------LITCLGWGEN  91



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 932752432


Query= TCONS_00002754

Length=418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463744 pfam12896, ANAPC4, Anaphase-promoting complex, cycloso...  192     3e-60


>CDD:463744 pfam12896, ANAPC4, Anaphase-promoting complex, cyclosome, subunit 
4.  Apc4 is one of the larger of the subunits of the anaphase-promoting 
complex or cyclosome. This family represents 
the long domain downstream of the WD40 repeat/s that are present 
on the Apc4 subunits. The anaphase-promoting complex 
is a multiprotein subunit E3 ubiquitin ligase complex that controls 
segregation of chromosomes and exit from mitosis in 
eukaryotes. Results in C.elegans show that the primary essential 
role of the spindle assembly checkpoint is not in the chromosome 
segregation process itself but rather in delaying 
anaphase onset until all chromosomes are properly attached to 
the spindle. the APC/C is likely to be required for all metaphase-to-anaphase 
transitions in a multicellular organism.
Length=203

 Score = 192 bits (491),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 71/148 (48%), Positives = 97/148 (66%), Gaps = 1/148 (1%)

Query  1    MRSINEDLKEKCHC-DFVTAAYHLVVTGDCFEPLKEFLVDIVGERGHKRWEKAVSSGYEN  59
            +R++ + LKE+      V   YHL++TG    PLKEFLV+ +GERG KRWEKAV S YEN
Sbjct  56   LRNLEDLLKEQGGESSIVQELYHLLLTGHPSPPLKEFLVNQLGERGLKRWEKAVESSYEN  115

Query  60   VRRLTHECLLPALERCEVLLSRLIGLSRFQKLSEVLGLETNDLNASVETLDCLHLLCHQI  119
            +R+L HE LLPALER  +LLS L GL+++ +  E+LGL+   ++  ++T   L L  H++
Sbjct  116  IRKLVHEHLLPALERLIILLSELRGLAKWHERYEILGLDPELIDELLDTAGSLLLKAHEL  175

Query  120  LINANEELAQFIAFSQWLRHEIDMQTAE  147
            L   NEEL  F AF +WLR+ ID    E
Sbjct  176  LQVINEELKLFKAFFRWLRYVIDRLADE  203



Lambda      K        H        a         alpha
   0.319    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00002755

Length=824


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1046489706


Query= TCONS_00002756

Length=741


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 941483344


Query= TCONS_00002757

Length=776


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 992413664


Query= TCONS_00002759

Length=872


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1115394378


Query= TCONS_00002758

Length=597


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 754686140


Query= TCONS_00007948

Length=700


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0768    0.140     1.90     42.6     43.6 

Effective search space used: 895197530


Query= TCONS_00007949

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat ...  55.5    6e-11


>CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat.  The HEAT repeat family 
is related to armadillo/beta-catenin-like repeats (see pfam00514). 
These EZ repeats are found in subunits of cyanobacterial 
phycocyanin lyase and other proteins and probably carry 
out a scaffolding role.
Length=55

 Score = 55.5 bits (134),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 34/56 (61%), Gaps = 1/56 (2%)

Query  51   WRHRDAAVAAFGAIMDGPDPKILEPLVKQALSVLISMMEDSSIQVRDSTAYALGRV  106
            WR R+AA  A G+ +    P +L P V + L  L+ ++ D S  VR++ A+ALGR+
Sbjct  1    WRVREAAALALGS-LAEGGPDLLAPAVPELLPALLPLLNDDSDLVREAAAWALGRL  55



Lambda      K        H        a         alpha
   0.319    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00007950

Length=569
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat ...  55.5    1e-10


>CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat.  The HEAT repeat family 
is related to armadillo/beta-catenin-like repeats (see pfam00514). 
These EZ repeats are found in subunits of cyanobacterial 
phycocyanin lyase and other proteins and probably carry 
out a scaffolding role.
Length=55

 Score = 55.5 bits (134),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 34/56 (61%), Gaps = 1/56 (2%)

Query  252  WRHRDAAVAAFGAIMDGPDPKILEPLVKQALSVLISMMEDSSIQVRDSTAYALGRV  307
            WR R+AA  A G+ +    P +L P V + L  L+ ++ D S  VR++ A+ALGR+
Sbjct  1    WRVREAAALALGS-LAEGGPDLLAPAVPELLPALLPLLNDDSDLVREAAAWALGRL  55



Lambda      K        H        a         alpha
   0.320    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 712842156


Query= TCONS_00007951

Length=705


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 902571480


Query= TCONS_00002760

Length=540


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 679815634


Query= TCONS_00002761

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat ...  55.5    1e-10


>CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat.  The HEAT repeat family 
is related to armadillo/beta-catenin-like repeats (see pfam00514). 
These EZ repeats are found in subunits of cyanobacterial 
phycocyanin lyase and other proteins and probably carry 
out a scaffolding role.
Length=55

 Score = 55.5 bits (134),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 34/56 (61%), Gaps = 1/56 (2%)

Query  136  WRHRDAAVAAFGAIMDGPDPKILEPLVKQALSVLISMMEDSSIQVRDSTAYALGRV  191
            WR R+AA  A G+ +    P +L P V + L  L+ ++ D S  VR++ A+ALGR+
Sbjct  1    WRVREAAALALGS-LAEGGPDLLAPAVPELLPALLPLLNDDSDLVREAAAWALGRL  55



Lambda      K        H        a         alpha
   0.320    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784588280


Query= TCONS_00002762

Length=872


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1115394378


Query= TCONS_00002763

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat ...  55.5    4e-11


>CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat.  The HEAT repeat family 
is related to armadillo/beta-catenin-like repeats (see pfam00514). 
These EZ repeats are found in subunits of cyanobacterial 
phycocyanin lyase and other proteins and probably carry 
out a scaffolding role.
Length=55

 Score = 55.5 bits (134),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 34/56 (61%), Gaps = 1/56 (2%)

Query  51   WRHRDAAVAAFGAIMDGPDPKILEPLVKQALSVLISMMEDSSIQVRDSTAYALGRV  106
            WR R+AA  A G+ +    P +L P V + L  L+ ++ D S  VR++ A+ALGR+
Sbjct  1    WRVREAAALALGS-LAEGGPDLLAPAVPELLPALLPLLNDDSDLVREAAAWALGRL  55



Lambda      K        H        a         alpha
   0.320    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00002764

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425667 pfam00410, Ribosomal_S8, Ribosomal protein S8              92.5    8e-26


>CDD:425667 pfam00410, Ribosomal_S8, Ribosomal protein S8.  
Length=127

 Score = 92.5 bits (231),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 17/133 (13%)

Query  7    LNDALNAINNAEKAGKRQVLIRPSSKVIVKFLSVMQKHGYIGEFEEVDDHRSGKIVIQLN  66
            + D L  I NA  AG  +V I P+SK+    L ++++ GYI +FE  +D     I I L 
Sbjct  3    IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL-  60

Query  67   GRLNK-CGVINPRYPVQLPDIEQ------WAVQLLPSRQ--FGYVVLTTSAGIMDHEEAR  117
             + NK   VI       L  I +           LP      G  +L+TS G+M  +EAR
Sbjct  61   -KYNKGEPVIK-----GLKRISKPGLRVYVGKDELPRVLNGLGIAILSTSKGVMTDKEAR  114

Query  118  RKHVAGKLLGFFY  130
            +K V G++L + +
Sbjct  115  KKGVGGEVLCYVW  127



Lambda      K        H        a         alpha
   0.322    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00007952

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425667 pfam00410, Ribosomal_S8, Ribosomal protein S8              92.5    8e-26


>CDD:425667 pfam00410, Ribosomal_S8, Ribosomal protein S8.  
Length=127

 Score = 92.5 bits (231),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 17/133 (13%)

Query  7    LNDALNAINNAEKAGKRQVLIRPSSKVIVKFLSVMQKHGYIGEFEEVDDHRSGKIVIQLN  66
            + D L  I NA  AG  +V I P+SK+    L ++++ GYI +FE  +D     I I L 
Sbjct  3    IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL-  60

Query  67   GRLNK-CGVINPRYPVQLPDIEQ------WAVQLLPSRQ--FGYVVLTTSAGIMDHEEAR  117
             + NK   VI       L  I +           LP      G  +L+TS G+M  +EAR
Sbjct  61   -KYNKGEPVIK-----GLKRISKPGLRVYVGKDELPRVLNGLGIAILSTSKGVMTDKEAR  114

Query  118  RKHVAGKLLGFFY  130
            +K V G++L + +
Sbjct  115  KKGVGGEVLCYVW  127



Lambda      K        H        a         alpha
   0.322    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00002765

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425667 pfam00410, Ribosomal_S8, Ribosomal protein S8              92.5    8e-26


>CDD:425667 pfam00410, Ribosomal_S8, Ribosomal protein S8.  
Length=127

 Score = 92.5 bits (231),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 17/133 (13%)

Query  7    LNDALNAINNAEKAGKRQVLIRPSSKVIVKFLSVMQKHGYIGEFEEVDDHRSGKIVIQLN  66
            + D L  I NA  AG  +V I P+SK+    L ++++ GYI +FE  +D     I I L 
Sbjct  3    IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL-  60

Query  67   GRLNK-CGVINPRYPVQLPDIEQ------WAVQLLPSRQ--FGYVVLTTSAGIMDHEEAR  117
             + NK   VI       L  I +           LP      G  +L+TS G+M  +EAR
Sbjct  61   -KYNKGEPVIK-----GLKRISKPGLRVYVGKDELPRVLNGLGIAILSTSKGVMTDKEAR  114

Query  118  RKHVAGKLLGFFY  130
            +K V G++L + +
Sbjct  115  KKGVGGEVLCYVW  127



Lambda      K        H        a         alpha
   0.322    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00007953

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425667 pfam00410, Ribosomal_S8, Ribosomal protein S8              92.5    8e-26


>CDD:425667 pfam00410, Ribosomal_S8, Ribosomal protein S8.  
Length=127

 Score = 92.5 bits (231),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 17/133 (13%)

Query  7    LNDALNAINNAEKAGKRQVLIRPSSKVIVKFLSVMQKHGYIGEFEEVDDHRSGKIVIQLN  66
            + D L  I NA  AG  +V I P+SK+    L ++++ GYI +FE  +D     I I L 
Sbjct  3    IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL-  60

Query  67   GRLNK-CGVINPRYPVQLPDIEQ------WAVQLLPSRQ--FGYVVLTTSAGIMDHEEAR  117
             + NK   VI       L  I +           LP      G  +L+TS G+M  +EAR
Sbjct  61   -KYNKGEPVIK-----GLKRISKPGLRVYVGKDELPRVLNGLGIAILSTSKGVMTDKEAR  114

Query  118  RKHVAGKLLGFFY  130
            +K V G++L + +
Sbjct  115  KKGVGGEVLCYVW  127



Lambda      K        H        a         alpha
   0.322    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00002766

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00007954

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425667 pfam00410, Ribosomal_S8, Ribosomal protein S8              92.5    8e-26


>CDD:425667 pfam00410, Ribosomal_S8, Ribosomal protein S8.  
Length=127

 Score = 92.5 bits (231),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 17/133 (13%)

Query  7    LNDALNAINNAEKAGKRQVLIRPSSKVIVKFLSVMQKHGYIGEFEEVDDHRSGKIVIQLN  66
            + D L  I NA  AG  +V I P+SK+    L ++++ GYI +FE  +D     I I L 
Sbjct  3    IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL-  60

Query  67   GRLNK-CGVINPRYPVQLPDIEQ------WAVQLLPSRQ--FGYVVLTTSAGIMDHEEAR  117
             + NK   VI       L  I +           LP      G  +L+TS G+M  +EAR
Sbjct  61   -KYNKGEPVIK-----GLKRISKPGLRVYVGKDELPRVLNGLGIAILSTSKGVMTDKEAR  114

Query  118  RKHVAGKLLGFFY  130
            +K V G++L + +
Sbjct  115  KKGVGGEVLCYVW  127



Lambda      K        H        a         alpha
   0.322    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00002767

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396989 pfam02666, PS_Dcarbxylase, Phosphatidylserine decarbox...  202     1e-62


>CDD:396989 pfam02666, PS_Dcarbxylase, Phosphatidylserine decarboxylase. 
 This is a family of phosphatidylserine decarboxylases, EC:4.1.1.65. 
These enzymes catalyze the reaction: Phosphatidyl-L-serine 
<=> phosphatidylethanolamine + CO2. Phosphatidylserine 
decarboxylase plays a central role in the biosynthesis of 
aminophospholipids by converting phosphatidylserine to phosphatidylethanolamine.
Length=198

 Score = 202 bits (516),  Expect = 1e-62, Method: Composition-based stats.
 Identities = 88/347 (25%), Positives = 122/347 (35%), Gaps = 149/347 (43%)

Query  197  LAAFFYRKLKPGVRPIDPDPHAIVSPSDGRILQFGLIDRGEVEQVKGITYSLDALLGAAT  256
            L AFF R L+   RPI   P A+VSP+DG+I + G I+   V QVKG+TYSL  LLG   
Sbjct  1    LNAFFTRFLRDPARPIPAGPGAVVSPADGKISEIGEIEDDSVIQVKGVTYSLRELLGD--  58

Query  257  PSSADHSKKFMNHMAEPSQKDAANMLADEEFAKVNGISYTLPTLLAGDKGGARRRAASLD  316
                D   KF                                                  
Sbjct  59   ----DKLDKFKG------------------------------------------------  66

Query  317  ASTKSEAAAEEAVKAEIARGDGSPWYAPKPTSNNALYYVVIYLAPGDYHRFHSPVSWVVE  376
                                                 ++VIYL+P DYHR H+PV   V+
Sbjct  67   -----------------------------------GTFIVIYLSPFDYHRNHAPVDGTVK  91

Query  377  SRRHFAGELYSVSPYLQRHLPGLFTLNERVVLLGRWRWGFFSYIPVGATNVGSIKINFDS  436
              R+  G+L  V+P   + +P LF LNERVVL+     G  + + VGA NVGSI +    
Sbjct  92   EVRYIPGKLLPVNPAALKEIPNLFALNERVVLVIETTDGKVAVVQVGALNVGSIVLTVKP  151

Query  437  ELRTNSLTTDTAADRAAALAAQRGEQYPGFVEATYLHASRTLGGHPLQRGEEMGGFQLGS  496
                                                       G  +++GEE+G F+ GS
Sbjct  152  -------------------------------------------GDEVKKGEELGYFKFGS  168

Query  497  SIVLVFEAPMGTRKSFDIGWEGGKREGGWNWTIEKGQRIKMGQKLGY  543
            ++VL+F                          +E GQ++K G+ +G 
Sbjct  169  TVVLLFPKGKFFE-----------------DLVEPGQKVKAGETIGA  198



Lambda      K        H        a         alpha
   0.319    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00002768

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00002769

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396989 pfam02666, PS_Dcarbxylase, Phosphatidylserine decarbox...  202     1e-62


>CDD:396989 pfam02666, PS_Dcarbxylase, Phosphatidylserine decarboxylase. 
 This is a family of phosphatidylserine decarboxylases, EC:4.1.1.65. 
These enzymes catalyze the reaction: Phosphatidyl-L-serine 
<=> phosphatidylethanolamine + CO2. Phosphatidylserine 
decarboxylase plays a central role in the biosynthesis of 
aminophospholipids by converting phosphatidylserine to phosphatidylethanolamine.
Length=198

 Score = 202 bits (516),  Expect = 1e-62, Method: Composition-based stats.
 Identities = 88/347 (25%), Positives = 122/347 (35%), Gaps = 149/347 (43%)

Query  197  LAAFFYRKLKPGVRPIDPDPHAIVSPSDGRILQFGLIDRGEVEQVKGITYSLDALLGAAT  256
            L AFF R L+   RPI   P A+VSP+DG+I + G I+   V QVKG+TYSL  LLG   
Sbjct  1    LNAFFTRFLRDPARPIPAGPGAVVSPADGKISEIGEIEDDSVIQVKGVTYSLRELLGD--  58

Query  257  PSSADHSKKFMNHMAEPSQKDAANMLADEEFAKVNGISYTLPTLLAGDKGGARRRAASLD  316
                D   KF                                                  
Sbjct  59   ----DKLDKFKG------------------------------------------------  66

Query  317  ASTKSEAAAEEAVKAEIARGDGSPWYAPKPTSNNALYYVVIYLAPGDYHRFHSPVSWVVE  376
                                                 ++VIYL+P DYHR H+PV   V+
Sbjct  67   -----------------------------------GTFIVIYLSPFDYHRNHAPVDGTVK  91

Query  377  SRRHFAGELYSVSPYLQRHLPGLFTLNERVVLLGRWRWGFFSYIPVGATNVGSIKINFDS  436
              R+  G+L  V+P   + +P LF LNERVVL+     G  + + VGA NVGSI +    
Sbjct  92   EVRYIPGKLLPVNPAALKEIPNLFALNERVVLVIETTDGKVAVVQVGALNVGSIVLTVKP  151

Query  437  ELRTNSLTTDTAADRAAALAAQRGEQYPGFVEATYLHASRTLGGHPLQRGEEMGGFQLGS  496
                                                       G  +++GEE+G F+ GS
Sbjct  152  -------------------------------------------GDEVKKGEELGYFKFGS  168

Query  497  SIVLVFEAPMGTRKSFDIGWEGGKREGGWNWTIEKGQRIKMGQKLGY  543
            ++VL+F                          +E GQ++K G+ +G 
Sbjct  169  TVVLLFPKGKFFE-----------------DLVEPGQKVKAGETIGA  198



Lambda      K        H        a         alpha
   0.319    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00002770

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425667 pfam00410, Ribosomal_S8, Ribosomal protein S8              92.5    8e-26


>CDD:425667 pfam00410, Ribosomal_S8, Ribosomal protein S8.  
Length=127

 Score = 92.5 bits (231),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 17/133 (13%)

Query  7    LNDALNAINNAEKAGKRQVLIRPSSKVIVKFLSVMQKHGYIGEFEEVDDHRSGKIVIQLN  66
            + D L  I NA  AG  +V I P+SK+    L ++++ GYI +FE  +D     I I L 
Sbjct  3    IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL-  60

Query  67   GRLNK-CGVINPRYPVQLPDIEQ------WAVQLLPSRQ--FGYVVLTTSAGIMDHEEAR  117
             + NK   VI       L  I +           LP      G  +L+TS G+M  +EAR
Sbjct  61   -KYNKGEPVIK-----GLKRISKPGLRVYVGKDELPRVLNGLGIAILSTSKGVMTDKEAR  114

Query  118  RKHVAGKLLGFFY  130
            +K V G++L + +
Sbjct  115  KKGVGGEVLCYVW  127



Lambda      K        H        a         alpha
   0.322    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00002771

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425667 pfam00410, Ribosomal_S8, Ribosomal protein S8              92.5    8e-26


>CDD:425667 pfam00410, Ribosomal_S8, Ribosomal protein S8.  
Length=127

 Score = 92.5 bits (231),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 17/133 (13%)

Query  7    LNDALNAINNAEKAGKRQVLIRPSSKVIVKFLSVMQKHGYIGEFEEVDDHRSGKIVIQLN  66
            + D L  I NA  AG  +V I P+SK+    L ++++ GYI +FE  +D     I I L 
Sbjct  3    IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL-  60

Query  67   GRLNK-CGVINPRYPVQLPDIEQ------WAVQLLPSRQ--FGYVVLTTSAGIMDHEEAR  117
             + NK   VI       L  I +           LP      G  +L+TS G+M  +EAR
Sbjct  61   -KYNKGEPVIK-----GLKRISKPGLRVYVGKDELPRVLNGLGIAILSTSKGVMTDKEAR  114

Query  118  RKHVAGKLLGFFY  130
            +K V G++L + +
Sbjct  115  KKGVGGEVLCYVW  127



Lambda      K        H        a         alpha
   0.322    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00007956

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00002772

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrog...  273     9e-93


>CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase. 
 
Length=346

 Score = 273 bits (699),  Expect = 9e-93, Method: Composition-based stats.
 Identities = 107/194 (55%), Positives = 131/194 (68%), Gaps = 12/194 (6%)

Query  1    MGTFGNLRPCNFAAPSLVDGSPLRPEVCRGVDFNIIRELTGGIYFGDRKEDDGSG--FAM  58
            +G F NLRP     P L D SPL+ EV  GVD  I+RELTGGIYFG  K   GSG   A+
Sbjct  94   LGLFANLRPAKVF-PPLGDASPLKNEV-EGVDIVIVRELTGGIYFGIEKGIKGSGNEVAV  151

Query  59   DTEPYSRAEIERITRLAAHLALQHNPPLPVWSLDKANVLATSRLWRKTVTEVMAKEFPQL  118
            DT+ YSR EIERI R+A  LA +      V S+DKANVL +S LWRK VTEV   E+P +
Sbjct  152  DTKLYSRDEIERIARVAFELARKRGRK-KVTSVDKANVLKSSDLWRKIVTEVAKAEYPDV  210

Query  119  KVEHQLIDSAAMIMVKEPRKLNGIVVTSNLFGDIISDEASVIPGSLGLLPSASLSGIPDG  178
            ++EHQL+D+AAM +VK P     ++VT NLFGDI+SDEAS++ GSLGLLPSASL      
Sbjct  211  ELEHQLVDNAAMQLVKNP-SQFDVIVTPNLFGDILSDEASMLTGSLGLLPSASLGA----  265

Query  179  KTKVNGIYEPIHGT  192
                 GI+EP+HG+
Sbjct  266  --NGFGIFEPVHGS  277



Lambda      K        H        a         alpha
   0.319    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00002773

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  83.1    7e-22


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 83.1 bits (206),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 32/77 (42%), Positives = 42/77 (55%), Gaps = 4/77 (5%)

Query  10  TPAEVESHNHAKSCFVTLGSKVYDVTSFLNDHPGGGDLILEYAGKDVKEILRDESSHNHS  69
           T  E+  HN    C+V +  KVYDVT FL +HPGG D+IL  AGKD  +         HS
Sbjct  1   TLEELSKHNGDGDCWVAINGKVYDVTKFLKEHPGGEDVILSAAGKDATDAFEA---IGHS  57

Query  70  EAAY-EILEDLLVGFLD  85
           E A  ++L+   +G L 
Sbjct  58  EDAAEKLLKKYRIGELA  74



Lambda      K        H        a         alpha
   0.324    0.143    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00007960

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  85.4    2e-21


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 85.4 bits (212),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 32/77 (42%), Positives = 42/77 (55%), Gaps = 4/77 (5%)

Query  146  TPAEVESHNHAKSCFVTLGSKVYDVTSFLNDHPGGGDLILEYAGKDVKEILRDESSHNHS  205
            T  E+  HN    C+V +  KVYDVT FL +HPGG D+IL  AGKD  +         HS
Sbjct  1    TLEELSKHNGDGDCWVAINGKVYDVTKFLKEHPGGEDVILSAAGKDATDAFEA---IGHS  57

Query  206  EAAY-EILEDLLVGFLD  221
            E A  ++L+   +G L 
Sbjct  58   EDAAEKLLKKYRIGELA  74



Lambda      K        H        a         alpha
   0.321    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00007961

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00002774

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.135    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00002777

Length=397


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00002775

Length=452


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00002776

Length=452


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00007963

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00007964

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00002778

Length=861
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402105 pfam10336, DUF2420, Protein of unknown function (DUF24...  79.9    1e-18


>CDD:402105 pfam10336, DUF2420, Protein of unknown function (DUF2420).  This 
is a family of proteins conserved in fungi. The function 
is not known.
Length=107

 Score = 79.9 bits (198),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 32/90 (36%), Positives = 49/90 (54%), Gaps = 6/90 (7%)

Query  326  LEDESLAYEPLGKLFESCREVLYEHVGENET----LVLDIESLNLQLMEDSTHISKVTLH  381
            LED+SL    L +LF + R  L  + G+  +    LVL+I  L L L ED+ +   ++L+
Sbjct  2    LEDDSLLNASLSELFAAIRSFLELNYGKLFSASKELVLEIPELGLTLTEDNVYNKDISLN  61

Query  382  QIIDVYLRLCHNDGIES--PEPLYLTLSTK  409
             I+ ++  L  N   E   PE LY+TLS +
Sbjct  62   DILSIFHILRENSNGEENVPEHLYITLSLQ  91



Lambda      K        H        a         alpha
   0.302    0.126    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1099603724


Query= TCONS_00002779

Length=861
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402105 pfam10336, DUF2420, Protein of unknown function (DUF24...  79.9    1e-18


>CDD:402105 pfam10336, DUF2420, Protein of unknown function (DUF2420).  This 
is a family of proteins conserved in fungi. The function 
is not known.
Length=107

 Score = 79.9 bits (198),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 32/90 (36%), Positives = 49/90 (54%), Gaps = 6/90 (7%)

Query  326  LEDESLAYEPLGKLFESCREVLYEHVGENET----LVLDIESLNLQLMEDSTHISKVTLH  381
            LED+SL    L +LF + R  L  + G+  +    LVL+I  L L L ED+ +   ++L+
Sbjct  2    LEDDSLLNASLSELFAAIRSFLELNYGKLFSASKELVLEIPELGLTLTEDNVYNKDISLN  61

Query  382  QIIDVYLRLCHNDGIES--PEPLYLTLSTK  409
             I+ ++  L  N   E   PE LY+TLS +
Sbjct  62   DILSIFHILRENSNGEENVPEHLYITLSLQ  91



Lambda      K        H        a         alpha
   0.302    0.126    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0794    0.140     1.90     42.6     43.6 

Effective search space used: 1099603724


Query= TCONS_00007966

Length=589
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460545 pfam02383, Syja_N, SacI homology domain. This Pfam fam...  327     2e-109


>CDD:460545 pfam02383, Syja_N, SacI homology domain.  This Pfam family represents 
a protein domain which shows homology to the yeast 
protein SacI. The SacI homology domain is most notably found 
at the amino terminal of the inositol 5'-phosphatase synaptojanin.
Length=295

 Score = 327 bits (842),  Expect = 2e-109, Method: Composition-based stats.
 Identities = 136/473 (29%), Positives = 189/473 (40%), Gaps = 181/473 (38%)

Query  67   YGLVGLLSVASYSFLISITQRQQVAQIQGKPIYSITNVAIIPLSSQADAGRAISQAKETL  126
            YG++GL+ + S  +LI IT+R+QV QI G PIY IT+V  IPL+S               
Sbjct  1    YGILGLIRLLSGYYLIVITKREQVGQIGGHPIYKITDVEFIPLNSSL-------------  47

Query  127  LQDEAGVGETASEGSISDDETDGGEPDINSEPSSPTQDDPSLRDRNESIAEEVIGKRVRF  186
                                                                        
Sbjct       ------------------------------------------------------------  

Query  187  GRFAASWLSRKTLGLPGLSNVRQDTTERLLGSEKDLGTELQPPIANLEMSPAASDAPGAG  246
                                                                 SD   A 
Sbjct  48   -----------------------------------------------------SDTQLAK  54

Query  247  ADSPLESGKEVSDPTVELLPKLLRYTRLIYSSQNFFFAYDYDLTRSFGAQETRNDHIPMH  306
             + P E              +LL+  +L  SS +F+F+YDYDLT S     TR+      
Sbjct  55   KEHPDE-------------ERLLKLLKLFLSSGSFYFSYDYDLTNSLQRNLTRSRSPSFD  101

Query  307  KVVDELFFWNKNLMNPFIK--ADAHSFILPLVQGFVGQREFTVSAKSEQPDSNVAEEHTE  364
             + D+ FFWN++L+ P I    D   +ILPL+QGFV Q                      
Sbjct  102  SL-DDRFFWNRHLLKPLIDFQLDLDRWILPLIQGFVEQG---------------------  139

Query  365  GRMLGEKDESQSIKVDAAKRNFLLTLISRRSVKRPGLRYLRRGVDDEGNTANTVETEQIL  424
                         K+    R+  LTLISRRS KR G RYLRRG+DD+GN AN VETEQI+
Sbjct  140  -------------KLSVFGRSVTLTLISRRSRKRAGTRYLRRGIDDDGNVANFVETEQIV  186

Query  425  SVPSWDPGHNVYSYLQVRGSIPLYFSQSP-YAFRPVPVLYHSTETNQFAFDRHFRNLARR  483
            S+ + +    ++S++Q+RGSIPL++SQ P   ++P   +    E  Q AF +HF +L  R
Sbjct  187  SLNTSNSEGKIFSFVQIRGSIPLFWSQDPNLKYKPKIQI-TRPEATQPAFKKHFDDLIER  245

Query  484  YGKLQAVSLIDKQAGELKLGNEYEKYARVLNDSGGIDGVPLRMEWFDFHNECR  536
            YG +  V+L++K+  E KL   YE+  + LN         LR   FDFH+EC+
Sbjct  246  YGPVHIVNLVEKKGRESKLSEAYEEAVKYLNQF---LPDKLRYTAFDFHHECK  295



Lambda      K        H        a         alpha
   0.315    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 742730716


Query= TCONS_00002782

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA. ...  324     8e-111


>CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA.  NIPA (nonimprinted 
in Prader-Willi/Angelman syndrome) is a family 
of integral membrane proteins which function as magnesium transporters.
Length=295

 Score = 324 bits (833),  Expect = 8e-111, Method: Composition-based stats.
 Identities = 146/290 (50%), Positives = 204/290 (70%), Gaps = 2/290 (1%)

Query  6    YVGLLLAILSTMAIGTSFVITKKGLMHASER-HGFEGEG-FSYLKSPIWWGGVTTLAIGE  63
            Y+G+ LAI S++ IG+SF+I KKGL+  + + H   G G + YLK  +WW G+ T+ +GE
Sbjct  4    YIGVGLAISSSIFIGSSFIIKKKGLLRLARKGHPRAGAGGYGYLKEWLWWAGLLTMGVGE  63

Query  64   VANFAAYAFAPAILVTPLGALSVLIGAVLGSYFLHERLGILGKLGCALCLLGSVVIVLHA  123
             ANFAAYAFAPA LVTPLGALSV+I AVL S+FL E+L + GKLGC LC+LGS VIV+HA
Sbjct  64   AANFAAYAFAPATLVTPLGALSVIISAVLASFFLKEKLNLSGKLGCVLCILGSTVIVIHA  123

Query  124  PPDKPVETVDEILDYAIQPGFLIYCLAVAIFSTVMIYRVAPVYGKKNPLIFISICSTVGS  183
            P ++ +E++ E+      PGFL+Y + V      +I    P +G+ N +++I+ICS +GS
Sbjct  124  PKEQEIESLREVWHLLTDPGFLVYVILVVGVVLALILYFEPRHGQTNIVVYITICSLIGS  183

Query  184  VSVMSVKAFGIALKLTFNGNNQFTHASTYVFMIVTGFCILTQMNYFNKALNQFSTSIVNP  243
            ++VMSVKA GIA+KLTF G NQ T+   ++ ++V   C +TQ+NY NKAL+ F+TSIV P
Sbjct  184  LTVMSVKAVGIAIKLTFTGKNQLTYPIAWILLLVMITCCVTQINYLNKALDIFNTSIVTP  243

Query  244  LYYVTFTTATLCASFILFKGFNTSDAVNTISLLCGFLTIFSGVYLLNLSR  293
            +YYV FTT+ + AS ILFK +     ++    LCGF T+ +GV+LL+  R
Sbjct  244  VYYVMFTTSVIIASAILFKEWLGMAFLDVAGELCGFFTVITGVFLLHAFR  293



Lambda      K        H        a         alpha
   0.323    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00002781

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA. ...  159     2e-48


>CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA.  NIPA (nonimprinted 
in Prader-Willi/Angelman syndrome) is a family 
of integral membrane proteins which function as magnesium transporters.
Length=295

 Score = 159 bits (405),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 65/136 (48%), Positives = 95/136 (70%), Gaps = 0/136 (0%)

Query  1    MIYRVAPVYGKKNPLIFISICSTVGSVSVMSVKAFGIALKLTFNGNNQFTHASTYVFMIV  60
            +I    P +G+ N +++I+ICS +GS++VMSVKA GIA+KLTF G NQ T+   ++ ++V
Sbjct  158  LILYFEPRHGQTNIVVYITICSLIGSLTVMSVKAVGIAIKLTFTGKNQLTYPIAWILLLV  217

Query  61   TGFCILTQMNYFNKALNQFSTSIVNPLYYVTFTTATLCASFILFKGFNTSDAVNTISLLC  120
               C +TQ+NY NKAL+ F+TSIV P+YYV FTT+ + AS ILFK +     ++    LC
Sbjct  218  MITCCVTQINYLNKALDIFNTSIVTPVYYVMFTTSVIIASAILFKEWLGMAFLDVAGELC  277

Query  121  GFLTIFSGVYLLNLSR  136
            GF T+ +GV+LL+  R
Sbjct  278  GFFTVITGVFLLHAFR  293



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00002785

Length=611
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460545 pfam02383, Syja_N, SacI homology domain. This Pfam fam...  328     3e-109


>CDD:460545 pfam02383, Syja_N, SacI homology domain.  This Pfam family represents 
a protein domain which shows homology to the yeast 
protein SacI. The SacI homology domain is most notably found 
at the amino terminal of the inositol 5'-phosphatase synaptojanin.
Length=295

 Score = 328 bits (843),  Expect = 3e-109, Method: Composition-based stats.
 Identities = 136/473 (29%), Positives = 189/473 (40%), Gaps = 181/473 (38%)

Query  67   YGLVGLLSVASYSFLISITQRQQVAQIQGKPIYSITNVAIIPLSSQADAGRAISQAKETL  126
            YG++GL+ + S  +LI IT+R+QV QI G PIY IT+V  IPL+S               
Sbjct  1    YGILGLIRLLSGYYLIVITKREQVGQIGGHPIYKITDVEFIPLNSSL-------------  47

Query  127  LQDEAGVGETASEGSISDDETDGGEPDINSEPSSPTQDDPSLRDRNESIAEEVIGKRVRF  186
                                                                        
Sbjct       ------------------------------------------------------------  

Query  187  GRFAASWLSRKTLGLPGLSNVRQDTTERLLGSEKDLGTELQPPIANLEMSPAASDAPGAG  246
                                                                 SD   A 
Sbjct  48   -----------------------------------------------------SDTQLAK  54

Query  247  ADSPLESGKEVSDPTVELLPKLLRYTRLIYSSQNFFFAYDYDLTRSFGAQETRNDHIPMH  306
             + P E              +LL+  +L  SS +F+F+YDYDLT S     TR+      
Sbjct  55   KEHPDE-------------ERLLKLLKLFLSSGSFYFSYDYDLTNSLQRNLTRSRSPSFD  101

Query  307  KVVDELFFWNKNLMNPFIK--ADAHSFILPLVQGFVGQREFTVSAKSEQPDSNVAEEHTE  364
             + D+ FFWN++L+ P I    D   +ILPL+QGFV Q                      
Sbjct  102  SL-DDRFFWNRHLLKPLIDFQLDLDRWILPLIQGFVEQG---------------------  139

Query  365  GRMLGEKDESQSIKVDAAKRNFLLTLISRRSVKRPGLRYLRRGVDDEGNTANTVETEQIL  424
                         K+    R+  LTLISRRS KR G RYLRRG+DD+GN AN VETEQI+
Sbjct  140  -------------KLSVFGRSVTLTLISRRSRKRAGTRYLRRGIDDDGNVANFVETEQIV  186

Query  425  SVPSWDPGHNVYSYLQVRGSIPLYFSQSP-YAFRPVPVLYHSTETNQFAFDRHFRNLARR  483
            S+ + +    ++S++Q+RGSIPL++SQ P   ++P   +    E  Q AF +HF +L  R
Sbjct  187  SLNTSNSEGKIFSFVQIRGSIPLFWSQDPNLKYKPKIQI-TRPEATQPAFKKHFDDLIER  245

Query  484  YGKLQAVSLIDKQAGELKLGNEYEKYARVLNDSGGIDGVPLRMEWFDFHNECR  536
            YG +  V+L++K+  E KL   YE+  + LN         LR   FDFH+EC+
Sbjct  246  YGPVHIVNLVEKKGRESKLSEAYEEAVKYLNQF---LPDKLRYTAFDFHHECK  295



Lambda      K        H        a         alpha
   0.316    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 775608132


Query= TCONS_00002783

Length=649
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460545 pfam02383, Syja_N, SacI homology domain. This Pfam fam...  328     9e-109


>CDD:460545 pfam02383, Syja_N, SacI homology domain.  This Pfam family represents 
a protein domain which shows homology to the yeast 
protein SacI. The SacI homology domain is most notably found 
at the amino terminal of the inositol 5'-phosphatase synaptojanin.
Length=295

 Score = 328 bits (843),  Expect = 9e-109, Method: Composition-based stats.
 Identities = 136/473 (29%), Positives = 189/473 (40%), Gaps = 181/473 (38%)

Query  67   YGLVGLLSVASYSFLISITQRQQVAQIQGKPIYSITNVAIIPLSSQADAGRAISQAKETL  126
            YG++GL+ + S  +LI IT+R+QV QI G PIY IT+V  IPL+S               
Sbjct  1    YGILGLIRLLSGYYLIVITKREQVGQIGGHPIYKITDVEFIPLNSSL-------------  47

Query  127  LQDEAGVGETASEGSISDDETDGGEPDINSEPSSPTQDDPSLRDRNESIAEEVIGKRVRF  186
                                                                        
Sbjct       ------------------------------------------------------------  

Query  187  GRFAASWLSRKTLGLPGLSNVRQDTTERLLGSEKDLGTELQPPIANLEMSPAASDAPGAG  246
                                                                 SD   A 
Sbjct  48   -----------------------------------------------------SDTQLAK  54

Query  247  ADSPLESGKEVSDPTVELLPKLLRYTRLIYSSQNFFFAYDYDLTRSFGAQETRNDHIPMH  306
             + P E              +LL+  +L  SS +F+F+YDYDLT S     TR+      
Sbjct  55   KEHPDE-------------ERLLKLLKLFLSSGSFYFSYDYDLTNSLQRNLTRSRSPSFD  101

Query  307  KVVDELFFWNKNLMNPFIK--ADAHSFILPLVQGFVGQREFTVSAKSEQPDSNVAEEHTE  364
             + D+ FFWN++L+ P I    D   +ILPL+QGFV Q                      
Sbjct  102  SL-DDRFFWNRHLLKPLIDFQLDLDRWILPLIQGFVEQG---------------------  139

Query  365  GRMLGEKDESQSIKVDAAKRNFLLTLISRRSVKRPGLRYLRRGVDDEGNTANTVETEQIL  424
                         K+    R+  LTLISRRS KR G RYLRRG+DD+GN AN VETEQI+
Sbjct  140  -------------KLSVFGRSVTLTLISRRSRKRAGTRYLRRGIDDDGNVANFVETEQIV  186

Query  425  SVPSWDPGHNVYSYLQVRGSIPLYFSQSP-YAFRPVPVLYHSTETNQFAFDRHFRNLARR  483
            S+ + +    ++S++Q+RGSIPL++SQ P   ++P   +    E  Q AF +HF +L  R
Sbjct  187  SLNTSNSEGKIFSFVQIRGSIPLFWSQDPNLKYKPKIQI-TRPEATQPAFKKHFDDLIER  245

Query  484  YGKLQAVSLIDKQAGELKLGNEYEKYARVLNDSGGIDGVPLRMEWFDFHNECR  536
            YG +  V+L++K+  E KL   YE+  + LN         LR   FDFH+EC+
Sbjct  246  YGPVHIVNLVEKKGRESKLSEAYEEAVKYLNQF---LPDKLRYTAFDFHHECK  295



Lambda      K        H        a         alpha
   0.315    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 819983240


Query= TCONS_00002786

Length=956
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460545 pfam02383, Syja_N, SacI homology domain. This Pfam fam...  327     3e-105
CDD:463592 pfam12456, hSac2, Inositol phosphatase. This domain fa...  179     2e-53 


>CDD:460545 pfam02383, Syja_N, SacI homology domain.  This Pfam family represents 
a protein domain which shows homology to the yeast 
protein SacI. The SacI homology domain is most notably found 
at the amino terminal of the inositol 5'-phosphatase synaptojanin.
Length=295

 Score = 327 bits (840),  Expect = 3e-105, Method: Composition-based stats.
 Identities = 136/473 (29%), Positives = 189/473 (40%), Gaps = 181/473 (38%)

Query  67   YGLVGLLSVASYSFLISITQRQQVAQIQGKPIYSITNVAIIPLSSQADAGRAISQAKETL  126
            YG++GL+ + S  +LI IT+R+QV QI G PIY IT+V  IPL+S               
Sbjct  1    YGILGLIRLLSGYYLIVITKREQVGQIGGHPIYKITDVEFIPLNSSL-------------  47

Query  127  LQDEAGVGETASEGSISDDETDGGEPDINSEPSSPTQDDPSLRDRNESIAEEVIGKRVRF  186
                                                                        
Sbjct       ------------------------------------------------------------  

Query  187  GRFAASWLSRKTLGLPGLSNVRQDTTERLLGSEKDLGTELQPPIANLEMSPAASDAPGAG  246
                                                                 SD   A 
Sbjct  48   -----------------------------------------------------SDTQLAK  54

Query  247  ADSPLESGKEVSDPTVELLPKLLRYTRLIYSSQNFFFAYDYDLTRSFGAQETRNDHIPMH  306
             + P E              +LL+  +L  SS +F+F+YDYDLT S     TR+      
Sbjct  55   KEHPDE-------------ERLLKLLKLFLSSGSFYFSYDYDLTNSLQRNLTRSRSPSFD  101

Query  307  KVVDELFFWNKNLMNPFIK--ADAHSFILPLVQGFVGQREFTVSAKSEQPDSNVAEEHTE  364
             + D+ FFWN++L+ P I    D   +ILPL+QGFV Q                      
Sbjct  102  SL-DDRFFWNRHLLKPLIDFQLDLDRWILPLIQGFVEQG---------------------  139

Query  365  GRMLGEKDESQSIKVDAAKRNFLLTLISRRSVKRPGLRYLRRGVDDEGNTANTVETEQIL  424
                         K+    R+  LTLISRRS KR G RYLRRG+DD+GN AN VETEQI+
Sbjct  140  -------------KLSVFGRSVTLTLISRRSRKRAGTRYLRRGIDDDGNVANFVETEQIV  186

Query  425  SVPSWDPGHNVYSYLQVRGSIPLYFSQSP-YAFRPVPVLYHSTETNQFAFDRHFRNLARR  483
            S+ + +    ++S++Q+RGSIPL++SQ P   ++P   +    E  Q AF +HF +L  R
Sbjct  187  SLNTSNSEGKIFSFVQIRGSIPLFWSQDPNLKYKPKIQI-TRPEATQPAFKKHFDDLIER  245

Query  484  YGKLQAVSLIDKQAGELKLGNEYEKYARVLNDSGGIDGVPLRMEWFDFHNECR  536
            YG +  V+L++K+  E KL   YE+  + LN         LR   FDFH+EC+
Sbjct  246  YGPVHIVNLVEKKGRESKLSEAYEEAVKYLNQF---LPDKLRYTAFDFHHECK  295


>CDD:463592 pfam12456, hSac2, Inositol phosphatase.  This domain family is 
found in eukaryotes, and is approximately 120 amino acids 
in length. The family is found in association with pfam02383. 
hSac2 functions as an inositol polyphosphate 5-phosphatase.
Length=115

 Score = 179 bits (456),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 60/115 (52%), Positives = 82/115 (71%), Gaps = 0/115 (0%)

Query  704  DPGISVQKLRRSAIDTSCKIVISDQSEEFLGGWTMLTPRQPNTLRTLPFEEAVLLLTDAA  763
            DP +S  K+R  AI+   K+V++D+ EEF+GGWT+L+P   NTLR+LP EE VLLLTD A
Sbjct  1    DPAVSRPKIREQAIEDCKKLVLADEDEEFIGGWTLLSPDHWNTLRSLPEEERVLLLTDKA  60

Query  764  VYSCRFDWNTDKVTSFERIDLRSISRLNYGTYITSILTESQANEQGNVGLVIEYR  818
            +Y C++D+N +KV  FER+ L  I R+  GTYITS L+ +Q +E+ N GL I Y 
Sbjct  61   LYICKYDFNLEKVVQFERVPLNDIDRIQLGTYITSTLSLAQRDERRNYGLRIHYD  115



Lambda      K        H        a         alpha
   0.315    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1217653360


Query= TCONS_00002787

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA. ...  244     1e-81


>CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA.  NIPA (nonimprinted 
in Prader-Willi/Angelman syndrome) is a family 
of integral membrane proteins which function as magnesium transporters.
Length=295

 Score = 244 bits (625),  Expect = 1e-81, Method: Composition-based stats.
 Identities = 121/236 (51%), Positives = 169/236 (72%), Gaps = 2/236 (1%)

Query  6    YVGLLLAILSTMAIGTSFVITKKGLMHASER-HGFEGEG-FSYLKSPIWWGGVTTLAIGE  63
            Y+G+ LAI S++ IG+SF+I KKGL+  + + H   G G + YLK  +WW G+ T+ +GE
Sbjct  4    YIGVGLAISSSIFIGSSFIIKKKGLLRLARKGHPRAGAGGYGYLKEWLWWAGLLTMGVGE  63

Query  64   VANFAAYAFAPAILVTPLGALSVLIGAVLGSYFLHERLGILGKLGCALCLLGSVVIVLHA  123
             ANFAAYAFAPA LVTPLGALSV+I AVL S+FL E+L + GKLGC LC+LGS VIV+HA
Sbjct  64   AANFAAYAFAPATLVTPLGALSVIISAVLASFFLKEKLNLSGKLGCVLCILGSTVIVIHA  123

Query  124  PPDKPVETVDEILDYAIQPGFLIYCLAVAIFSTVMIYRVAPVYGKKNPLIFISICSTVGS  183
            P ++ +E++ E+      PGFL+Y + V      +I    P +G+ N +++I+ICS +GS
Sbjct  124  PKEQEIESLREVWHLLTDPGFLVYVILVVGVVLALILYFEPRHGQTNIVVYITICSLIGS  183

Query  184  VSVMSVKAFGIALKLTFNGNNQFTHASTYVFMIVTGFCILTQMNYFNKALNQFSTS  239
            ++VMSVKA GIA+KLTF G NQ T+   ++ ++V   C +TQ+NY NKAL+ F+TS
Sbjct  184  LTVMSVKAVGIAIKLTFTGKNQLTYPIAWILLLVMITCCVTQINYLNKALDIFNTS  239



Lambda      K        H        a         alpha
   0.327    0.141    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00002788

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA. ...  301     4e-102


>CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA.  NIPA (nonimprinted 
in Prader-Willi/Angelman syndrome) is a family 
of integral membrane proteins which function as magnesium transporters.
Length=295

 Score = 301 bits (773),  Expect = 4e-102, Method: Composition-based stats.
 Identities = 129/251 (51%), Positives = 178/251 (71%), Gaps = 0/251 (0%)

Query  13   GFSYLKSPIWWGGVTTLAIGEVANFAAYAFAPAILVTPLGALSVLIGAVLGSYFLHERLG  72
            G+ YLK  +WW G+ T+ +GE ANFAAYAFAPA LVTPLGALSV+I AVL S+FL E+L 
Sbjct  43   GYGYLKEWLWWAGLLTMGVGEAANFAAYAFAPATLVTPLGALSVIISAVLASFFLKEKLN  102

Query  73   ILGKLGCALCLLGSVVIVLHAPPDKPVETVDEILDYAIQPGFLIYCLAVAIFSTVMIYRV  132
            + GKLGC LC+LGS VIV+HAP ++ +E++ E+      PGFL+Y + V      +I   
Sbjct  103  LSGKLGCVLCILGSTVIVIHAPKEQEIESLREVWHLLTDPGFLVYVILVVGVVLALILYF  162

Query  133  APVYGKKNPLIFISICSTVGSVSVMSVKAFGIALKLTFNGNNQFTHASTYVFMIVTGFCI  192
             P +G+ N +++I+ICS +GS++VMSVKA GIA+KLTF G NQ T+   ++ ++V   C 
Sbjct  163  EPRHGQTNIVVYITICSLIGSLTVMSVKAVGIAIKLTFTGKNQLTYPIAWILLLVMITCC  222

Query  193  LTQMNYFNKALNQFSTSIVNPLYYVTFTTATLCASFILFKGFNTSDAVNTISLLCGFLTI  252
            +TQ+NY NKAL+ F+TSIV P+YYV FTT+ + AS ILFK +     ++    LCGF T+
Sbjct  223  VTQINYLNKALDIFNTSIVTPVYYVMFTTSVIIASAILFKEWLGMAFLDVAGELCGFFTV  282

Query  253  FSGVYLLNLSR  263
             +GV+LL+  R
Sbjct  283  ITGVFLLHAFR  293



Lambda      K        H        a         alpha
   0.323    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00007967

Length=637
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460545 pfam02383, Syja_N, SacI homology domain. This Pfam fam...  249     3e-78
CDD:463592 pfam12456, hSac2, Inositol phosphatase. This domain fa...  177     7e-54


>CDD:460545 pfam02383, Syja_N, SacI homology domain.  This Pfam family represents 
a protein domain which shows homology to the yeast 
protein SacI. The SacI homology domain is most notably found 
at the amino terminal of the inositol 5'-phosphatase synaptojanin.
Length=295

 Score = 249 bits (637),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 84/220 (38%), Positives = 116/220 (53%), Gaps = 41/220 (19%)

Query  1    MNPFIK--ADAHSFILPLVQGFVGQREFTVSAKSEQPDSNVAEEHTEGRMLGEKDESQSI  58
            + P I    D   +ILPL+QGFV Q                                   
Sbjct  114  LKPLIDFQLDLDRWILPLIQGFVEQG----------------------------------  139

Query  59   KVDAAKRNFLLTLISRRSVKRPGLRYLRRGVDDEGNTANTVETEQILSVPSWDPGHNVYS  118
            K+    R+  LTLISRRS KR G RYLRRG+DD+GN AN VETEQI+S+ + +    ++S
Sbjct  140  KLSVFGRSVTLTLISRRSRKRAGTRYLRRGIDDDGNVANFVETEQIVSLNTSNSEGKIFS  199

Query  119  YLQVRGSIPLYFSQSP-YAFRPVPVLYHSTETNQFAFDRHFRNLARRYGKLQAVSLIDKQ  177
            ++Q+RGSIPL++SQ P   ++P   +    E  Q AF +HF +L  RYG +  V+L++K+
Sbjct  200  FVQIRGSIPLFWSQDPNLKYKPKIQI-TRPEATQPAFKKHFDDLIERYGPVHIVNLVEKK  258

Query  178  AGELKLGNEYEKYARVLNDSGGIDGVPLRMEWFDFHNECR  217
              E KL   YE+  + LN         LR   FDFH+EC+
Sbjct  259  GRESKLSEAYEEAVKYLNQF---LPDKLRYTAFDFHHECK  295


>CDD:463592 pfam12456, hSac2, Inositol phosphatase.  This domain family is 
found in eukaryotes, and is approximately 120 amino acids 
in length. The family is found in association with pfam02383. 
hSac2 functions as an inositol polyphosphate 5-phosphatase.
Length=115

 Score = 177 bits (452),  Expect = 7e-54, Method: Composition-based stats.
 Identities = 60/115 (52%), Positives = 82/115 (71%), Gaps = 0/115 (0%)

Query  385  DPGISVQKLRRSAIDTSCKIVISDQSEEFLGGWTMLTPRQPNTLRTLPFEEAVLLLTDAA  444
            DP +S  K+R  AI+   K+V++D+ EEF+GGWT+L+P   NTLR+LP EE VLLLTD A
Sbjct  1    DPAVSRPKIREQAIEDCKKLVLADEDEEFIGGWTLLSPDHWNTLRSLPEEERVLLLTDKA  60

Query  445  VYSCRFDWNTDKVTSFERIDLRSISRLNYGTYITSILTESQANEQGNVGLVIEYR  499
            +Y C++D+N +KV  FER+ L  I R+  GTYITS L+ +Q +E+ N GL I Y 
Sbjct  61   LYICKYDFNLEKVVQFERVPLNDIDRIQLGTYITSTLSLAQRDERRNYGLRIHYD  115



Lambda      K        H        a         alpha
   0.317    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 802285760


Query= TCONS_00002789

Length=355
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460545 pfam02383, Syja_N, SacI homology domain. This Pfam fam...  247     6e-81


>CDD:460545 pfam02383, Syja_N, SacI homology domain.  This Pfam family represents 
a protein domain which shows homology to the yeast 
protein SacI. The SacI homology domain is most notably found 
at the amino terminal of the inositol 5'-phosphatase synaptojanin.
Length=295

 Score = 247 bits (632),  Expect = 6e-81, Method: Composition-based stats.
 Identities = 84/220 (38%), Positives = 116/220 (53%), Gaps = 41/220 (19%)

Query  1    MNPFIK--ADAHSFILPLVQGFVGQREFTVSAKSEQPDSNVAEEHTEGRMLGEKDESQSI  58
            + P I    D   +ILPL+QGFV Q                                   
Sbjct  114  LKPLIDFQLDLDRWILPLIQGFVEQG----------------------------------  139

Query  59   KVDAAKRNFLLTLISRRSVKRPGLRYLRRGVDDEGNTANTVETEQILSVPSWDPGHNVYS  118
            K+    R+  LTLISRRS KR G RYLRRG+DD+GN AN VETEQI+S+ + +    ++S
Sbjct  140  KLSVFGRSVTLTLISRRSRKRAGTRYLRRGIDDDGNVANFVETEQIVSLNTSNSEGKIFS  199

Query  119  YLQVRGSIPLYFSQSP-YAFRPVPVLYHSTETNQFAFDRHFRNLARRYGKLQAVSLIDKQ  177
            ++Q+RGSIPL++SQ P   ++P   +    E  Q AF +HF +L  RYG +  V+L++K+
Sbjct  200  FVQIRGSIPLFWSQDPNLKYKPKIQI-TRPEATQPAFKKHFDDLIERYGPVHIVNLVEKK  258

Query  178  AGELKLGNEYEKYARVLNDSGGIDGVPLRMEWFDFHNECR  217
              E KL   YE+  + LN         LR   FDFH+EC+
Sbjct  259  GRESKLSEAYEEAVKYLNQF---LPDKLRYTAFDFHHECK  295



Lambda      K        H        a         alpha
   0.318    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00002790

Length=937
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460545 pfam02383, Syja_N, SacI homology domain. This Pfam fam...  316     3e-101
CDD:463592 pfam12456, hSac2, Inositol phosphatase. This domain fa...  179     2e-53 


>CDD:460545 pfam02383, Syja_N, SacI homology domain.  This Pfam family represents 
a protein domain which shows homology to the yeast 
protein SacI. The SacI homology domain is most notably found 
at the amino terminal of the inositol 5'-phosphatase synaptojanin.
Length=295

 Score = 316 bits (812),  Expect = 3e-101, Method: Composition-based stats.
 Identities = 106/282 (38%), Positives = 150/282 (53%), Gaps = 42/282 (15%)

Query  239  SDPTVELLPKLLRYTRLIYSSQNFFFAYDYDLTRSFGAQETRNDHIPMHKVVDELFFWNK  298
            +        +LL+  +L  SS +F+F+YDYDLT S     TR+       + D+ FFWN+
Sbjct  53   AKKEHPDEERLLKLLKLFLSSGSFYFSYDYDLTNSLQRNLTRSRSPSFDSL-DDRFFWNR  111

Query  299  NLMNPFIK--ADAHSFILPLVQGFVGQREFTVSAKSEQPDSNVAEEHTEGRMLGEKDESQ  356
            +L+ P I    D   +ILPL+QGFV Q                                 
Sbjct  112  HLLKPLIDFQLDLDRWILPLIQGFVEQG--------------------------------  139

Query  357  SIKVDAAKRNFLLTLISRRSVKRPGLRYLRRGVDDEGNTANTVETEQILSVPSWDPGHNV  416
              K+    R+  LTLISRRS KR G RYLRRG+DD+GN AN VETEQI+S+ + +    +
Sbjct  140  --KLSVFGRSVTLTLISRRSRKRAGTRYLRRGIDDDGNVANFVETEQIVSLNTSNSEGKI  197

Query  417  YSYLQVRGSIPLYFSQSP-YAFRPVPVLYHSTETNQFAFDRHFRNLARRYGKLQAVSLID  475
            +S++Q+RGSIPL++SQ P   ++P   +    E  Q AF +HF +L  RYG +  V+L++
Sbjct  198  FSFVQIRGSIPLFWSQDPNLKYKPKIQI-TRPEATQPAFKKHFDDLIERYGPVHIVNLVE  256

Query  476  KQAGELKLGNEYEKYARVLNDSGGIDGVPLRMEWFDFHNECR  517
            K+  E KL   YE+  + LN         LR   FDFH+EC+
Sbjct  257  KKGRESKLSEAYEEAVKYLNQF---LPDKLRYTAFDFHHECK  295


>CDD:463592 pfam12456, hSac2, Inositol phosphatase.  This domain family is 
found in eukaryotes, and is approximately 120 amino acids 
in length. The family is found in association with pfam02383. 
hSac2 functions as an inositol polyphosphate 5-phosphatase.
Length=115

 Score = 179 bits (457),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 60/115 (52%), Positives = 82/115 (71%), Gaps = 0/115 (0%)

Query  685  DPGISVQKLRRSAIDTSCKIVISDQSEEFLGGWTMLTPRQPNTLRTLPFEEAVLLLTDAA  744
            DP +S  K+R  AI+   K+V++D+ EEF+GGWT+L+P   NTLR+LP EE VLLLTD A
Sbjct  1    DPAVSRPKIREQAIEDCKKLVLADEDEEFIGGWTLLSPDHWNTLRSLPEEERVLLLTDKA  60

Query  745  VYSCRFDWNTDKVTSFERIDLRSISRLNYGTYITSILTESQANEQGNVGLVIEYR  799
            +Y C++D+N +KV  FER+ L  I R+  GTYITS L+ +Q +E+ N GL I Y 
Sbjct  61   LYICKYDFNLEKVVQFERVPLNDIDRIQLGTYITSTLSLAQRDERRNYGLRIHYD  115



Lambda      K        H        a         alpha
   0.315    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1208702788


Query= TCONS_00002791

Length=722
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460545 pfam02383, Syja_N, SacI homology domain. This Pfam fam...  312     5e-102
CDD:463592 pfam12456, hSac2, Inositol phosphatase. This domain fa...  178     1e-53 


>CDD:460545 pfam02383, Syja_N, SacI homology domain.  This Pfam family represents 
a protein domain which shows homology to the yeast 
protein SacI. The SacI homology domain is most notably found 
at the amino terminal of the inositol 5'-phosphatase synaptojanin.
Length=295

 Score = 312 bits (803),  Expect = 5e-102, Method: Composition-based stats.
 Identities = 106/282 (38%), Positives = 150/282 (53%), Gaps = 42/282 (15%)

Query  24   SDPTVELLPKLLRYTRLIYSSQNFFFAYDYDLTRSFGAQETRNDHIPMHKVVDELFFWNK  83
            +        +LL+  +L  SS +F+F+YDYDLT S     TR+       + D+ FFWN+
Sbjct  53   AKKEHPDEERLLKLLKLFLSSGSFYFSYDYDLTNSLQRNLTRSRSPSFDSL-DDRFFWNR  111

Query  84   NLMNPFIK--ADAHSFILPLVQGFVGQREFTVSAKSEQPDSNVAEEHTEGRMLGEKDESQ  141
            +L+ P I    D   +ILPL+QGFV Q                                 
Sbjct  112  HLLKPLIDFQLDLDRWILPLIQGFVEQG--------------------------------  139

Query  142  SIKVDAAKRNFLLTLISRRSVKRPGLRYLRRGVDDEGNTANTVETEQILSVPSWDPGHNV  201
              K+    R+  LTLISRRS KR G RYLRRG+DD+GN AN VETEQI+S+ + +    +
Sbjct  140  --KLSVFGRSVTLTLISRRSRKRAGTRYLRRGIDDDGNVANFVETEQIVSLNTSNSEGKI  197

Query  202  YSYLQVRGSIPLYFSQSP-YAFRPVPVLYHSTETNQFAFDRHFRNLARRYGKLQAVSLID  260
            +S++Q+RGSIPL++SQ P   ++P   +    E  Q AF +HF +L  RYG +  V+L++
Sbjct  198  FSFVQIRGSIPLFWSQDPNLKYKPKIQI-TRPEATQPAFKKHFDDLIERYGPVHIVNLVE  256

Query  261  KQAGELKLGNEYEKYARVLNDSGGIDGVPLRMEWFDFHNECR  302
            K+  E KL   YE+  + LN         LR   FDFH+EC+
Sbjct  257  KKGRESKLSEAYEEAVKYLNQF---LPDKLRYTAFDFHHECK  295


>CDD:463592 pfam12456, hSac2, Inositol phosphatase.  This domain family is 
found in eukaryotes, and is approximately 120 amino acids 
in length. The family is found in association with pfam02383. 
hSac2 functions as an inositol polyphosphate 5-phosphatase.
Length=115

 Score = 178 bits (454),  Expect = 1e-53, Method: Composition-based stats.
 Identities = 60/115 (52%), Positives = 82/115 (71%), Gaps = 0/115 (0%)

Query  470  DPGISVQKLRRSAIDTSCKIVISDQSEEFLGGWTMLTPRQPNTLRTLPFEEAVLLLTDAA  529
            DP +S  K+R  AI+   K+V++D+ EEF+GGWT+L+P   NTLR+LP EE VLLLTD A
Sbjct  1    DPAVSRPKIREQAIEDCKKLVLADEDEEFIGGWTLLSPDHWNTLRSLPEEERVLLLTDKA  60

Query  530  VYSCRFDWNTDKVTSFERIDLRSISRLNYGTYITSILTESQANEQGNVGLVIEYR  584
            +Y C++D+N +KV  FER+ L  I R+  GTYITS L+ +Q +E+ N GL I Y 
Sbjct  61   LYICKYDFNLEKVVQFERVPLNDIDRIQLGTYITSTLSLAQRDERRNYGLRIHYD  115



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 913835456


Query= TCONS_00002793

Length=917
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat ...  74.3    3e-17


>CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat.  The HEAT repeat family 
is related to armadillo/beta-catenin-like repeats (see pfam00514). 
These EZ repeats are found in subunits of cyanobacterial 
phycocyanin lyase and other proteins and probably carry 
out a scaffolding role.
Length=55

 Score = 74.3 bits (183),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  439  WPQREAAVLTLGAVADGCMDAVTPHLPELVPYLISLLNDPQPVVRQITCWCLGRY  493
            W  REAA L LG++A+G  D + P +PEL+P L+ LLND   +VR+   W LGR 
Sbjct  1    WRVREAAALALGSLAEGGPDLLAPAVPELLPALLPLLNDDSDLVREAAAWALGRL  55



Lambda      K        H        a         alpha
   0.320    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1179992508


Query= TCONS_00002792

Length=937
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat ...  74.7    3e-17


>CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat.  The HEAT repeat family 
is related to armadillo/beta-catenin-like repeats (see pfam00514). 
These EZ repeats are found in subunits of cyanobacterial 
phycocyanin lyase and other proteins and probably carry 
out a scaffolding role.
Length=55

 Score = 74.7 bits (184),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  439  WPQREAAVLTLGAVADGCMDAVTPHLPELVPYLISLLNDPQPVVRQITCWCLGRY  493
            W  REAA L LG++A+G  D + P +PEL+P L+ LLND   +VR+   W LGR 
Sbjct  1    WRVREAAALALGSLAEGGPDLLAPAVPELLPALLPLLNDDSDLVREAAAWALGRL  55



Lambda      K        H        a         alpha
   0.320    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1208702788


Query= TCONS_00007969

Length=874
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat ...  74.7    3e-17


>CDD:463906 pfam13513, HEAT_EZ, HEAT-like repeat.  The HEAT repeat family 
is related to armadillo/beta-catenin-like repeats (see pfam00514). 
These EZ repeats are found in subunits of cyanobacterial 
phycocyanin lyase and other proteins and probably carry 
out a scaffolding role.
Length=55

 Score = 74.7 bits (184),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  376  WPQREAAVLTLGAVADGCMDAVTPHLPELVPYLISLLNDPQPVVRQITCWCLGRY  430
            W  REAA L LG++A+G  D + P +PEL+P L+ LLND   +VR+   W LGR 
Sbjct  1    WRVREAAALALGSLAEGGPDLLAPAVPELLPALLPLLNDDSDLVREAAAWALGRL  55



Lambda      K        H        a         alpha
   0.320    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1118265406


Query= TCONS_00002794

Length=522


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0729    0.140     1.90     42.6     43.6 

Effective search space used: 652562446


Query= TCONS_00007970

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00002795

Length=422


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00002796

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00002797

Length=571
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  56.2    4e-11


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 56.2 bits (136),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 0/33 (0%)

Query  19  GCATCKRRHIRCDETFPQCRNCTKHNCRCDYMD  51
            C  C++R ++CD   P C  C K+   C Y  
Sbjct  2   ACDNCRKRKVKCDGKKPACSRCIKNGLECTYSR  34



Lambda      K        H        a         alpha
   0.321    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 715831012


Query= TCONS_00002798

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  267     1e-91


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 267 bits (685),  Expect = 1e-91, Method: Composition-based stats.
 Identities = 96/217 (44%), Positives = 132/217 (61%), Gaps = 17/217 (8%)

Query  9    TIESDEGVFTSLIENLGVKDV-QFEELISLDADTIRSL--SPVYGVIFLFKWIREPPSTN  65
             +ES+  VFT L+  LGV  V QFE++ SLD + + ++   PVY +IFLF       +  
Sbjct  2    PLESNPEVFTELLHKLGVSGVLQFEDVYSLDDEELLAMLPRPVYALIFLFP---ITEAYE  58

Query  66   TTQPLDGTYITSLPENLFFAAQTIQNACGTQAILSVILNQDSPASTPYPINIGPELRSFK  125
              +  +G  I    EN+FFA QTI NACGT A+L  +LN         P+++G  L+ FK
Sbjct  59   EKREEEGEEIKDEGENVFFAKQTIGNACGTIALLHALLNNPDI-----PLDLGSTLKKFK  113

Query  126  EFTAGFPPDLRGEALSNSETIRTAHNAFARASPFVDETVRTTQDEEADVYHFIAYTPVNG  185
            EFT G  P+ RGEAL NSE +R AHN+FAR      +T   + D++ D +HFIA+ PV+G
Sbjct  114  EFTKGLSPEERGEALENSEELREAHNSFARQ----GQTEAPSDDDDVD-FHFIAFVPVDG  168

Query  186  VLYELDGLQPYPISHGECNAETF-PEKVIEVLQRRIA  221
             LYELDGL+P PI HG C+ E +  + V +V+Q RI 
Sbjct  169  HLYELDGLKPGPIDHGPCSDEDWLLDAVRKVIQERIE  205



Lambda      K        H        a         alpha
   0.318    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00002799

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00002800

Length=316
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  270     4e-92


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 270 bits (694),  Expect = 4e-92, Method: Composition-based stats.
 Identities = 96/217 (44%), Positives = 132/217 (61%), Gaps = 17/217 (8%)

Query  9    TIESDEGVFTSLIENLGVKDV-QFEELISLDADTIRSL--SPVYGVIFLFKWIREPPSTN  65
             +ES+  VFT L+  LGV  V QFE++ SLD + + ++   PVY +IFLF       +  
Sbjct  2    PLESNPEVFTELLHKLGVSGVLQFEDVYSLDDEELLAMLPRPVYALIFLFP---ITEAYE  58

Query  66   TTQPLDGTYITSLPENLFFAAQTIQNACGTQAILSVILNQDSPASTPYPINIGPELRSFK  125
              +  +G  I    EN+FFA QTI NACGT A+L  +LN         P+++G  L+ FK
Sbjct  59   EKREEEGEEIKDEGENVFFAKQTIGNACGTIALLHALLNNPDI-----PLDLGSTLKKFK  113

Query  126  EFTAGFPPDLRGEALSNSETIRTAHNAFARASPFVDETVRTTQDEEADVYHFIAYTPVNG  185
            EFT G  P+ RGEAL NSE +R AHN+FAR      +T   + D++ D +HFIA+ PV+G
Sbjct  114  EFTKGLSPEERGEALENSEELREAHNSFARQ----GQTEAPSDDDDVD-FHFIAFVPVDG  168

Query  186  VLYELDGLQPYPISHGECNAETF-PEKVIEVLQRRIA  221
             LYELDGL+P PI HG C+ E +  + V +V+Q RI 
Sbjct  169  HLYELDGLKPGPIDHGPCSDEDWLLDAVRKVIQERIE  205



Lambda      K        H        a         alpha
   0.317    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00007971

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00002801

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00002802

Length=656
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  147     3e-41
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            110     1e-27


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 147 bits (374),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 75/303 (25%), Positives = 115/303 (38%), Gaps = 92/303 (30%)

Query  272  ERLDELGKGNYGTVYKVRHSRPHMRKPGMGLRGIISRPAENSTPDSTSAAKPQDNLSGYI  331
            E L +LG G++GTVYK +H                                     +G I
Sbjct  2    EVLRKLGSGSFGTVYKAKH-----------------------------------RDTGKI  26

Query  332  MAMKEIRLEL-DENKFAQIIMELDILHRCVSPFIIDFYGAFFQEGAVYMCVEYMDGGSID  390
            +A+K+I+ E   + K   I+ E+ IL +   P I+  Y AF  +  +Y+ +EY++GGS+ 
Sbjct  27   VAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRLYDAFEDKDNLYLVLEYVEGGSLF  86

Query  391  KLYKDG--VPENILRKVALSTVMGLKTLKDDHNIIHRDVKPTNILVNSRGQIKICDFGVS  448
             L  +     E   + +    + GL+               T   V +            
Sbjct  87   DLLSEKGAFSEREAKFIMKQILEGLE----------SGSSLTTF-VGTPW----------  125

Query  449  GNLVASIAKTNIGCQSYMAPERIAGGGVQQSGATGGGTYSVQSDIWSLGLTIIECAIGRY  508
                            YMAPE + G             Y  + D+WSLG  + E   G+ 
Sbjct  126  ----------------YMAPEVLGGNP-----------YGPKVDVWSLGCILYELLTGKP  158

Query  509  PYPPETFNNIFSQLHAIVHG--DPPTLPEEGYSEEAHAFVHACLDKNPSKRPSYSTLLRH  566
            P+P    N I+     I+      P LP    SEEA   +   L K+PSKR + +  L+H
Sbjct  159  PFPGINGNEIY---ELIIDQPYAFPELPSN-LSEEAKDLLKKLLKKDPSKRLTATQALQH  214

Query  567  PWL  569
            PW 
Sbjct  215  PWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 110 bits (278),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 73/313 (23%), Positives = 118/313 (38%), Gaps = 73/313 (23%)

Query  271  VERLDELGKGNYGTVYKVRHSRPHMRKPGMGLRGIISRPAENSTPDSTSAAKPQDNLSGY  330
            +   ++LG+G +G VYK                G                 K +   +  
Sbjct  1    LTLGEKLGEGAFGEVYK----------------GT---------------LKGEGENTKI  29

Query  331  IMAMKEIRLELDENKFAQIIMELDILHRCVSPFIIDFYGAFFQEGAVYMCVEYMDGGSID  390
             +A+K ++   DE +    + E  I+ +   P I+   G   Q   +Y+  EYM GG + 
Sbjct  30   KVAVKTLKEGADEEEREDFLEEASIMKKLDHPNIVKLLGVCTQGEPLYIVTEYMPGGDLL  89

Query  391  K-LYKDGVPENILRKV--ALSTVMGLKTLKDDHNIIHRDVKPTNILVNSRGQIKICDFGV  447
              L K      +   +  AL    G++ L +  N +HRD+   N LV+    +KI DFG+
Sbjct  90   DFLRKHKRKLTLKDLLSMALQIAKGMEYL-ESKNFVHRDLAARNCLVSENLVVKISDFGL  148

Query  448  S-------GNLVASIAKTNIGCQSYMAPERIAGGGVQQSGATGGGTYSVQSDIWSLGLTI  500
            S               K  I    +MAPE +             G ++ +SD+WS G+ +
Sbjct  149  SRDIYDDDYYRKRGGGKLPI---KWMAPESLK-----------DGKFTSKSDVWSFGVLL  194

Query  501  IE-CAIGRYPYP----PETFNNIFS--QLHAIVHGDPPTLPEEGYSEEAHAFVHACLDKN  553
             E   +G  PYP     E    +    +L       P   P+E Y          C   +
Sbjct  195  WEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQ-----PENCPDELYDLMKQ-----CWAYD  244

Query  554  PSKRPSYSTLLRH  566
            P  RP++S L+  
Sbjct  245  PEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.312    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 830306770


Query= TCONS_00002803

Length=656
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  147     3e-41
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            110     1e-27


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 147 bits (374),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 75/303 (25%), Positives = 115/303 (38%), Gaps = 92/303 (30%)

Query  272  ERLDELGKGNYGTVYKVRHSRPHMRKPGMGLRGIISRPAENSTPDSTSAAKPQDNLSGYI  331
            E L +LG G++GTVYK +H                                     +G I
Sbjct  2    EVLRKLGSGSFGTVYKAKH-----------------------------------RDTGKI  26

Query  332  MAMKEIRLEL-DENKFAQIIMELDILHRCVSPFIIDFYGAFFQEGAVYMCVEYMDGGSID  390
            +A+K+I+ E   + K   I+ E+ IL +   P I+  Y AF  +  +Y+ +EY++GGS+ 
Sbjct  27   VAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRLYDAFEDKDNLYLVLEYVEGGSLF  86

Query  391  KLYKDG--VPENILRKVALSTVMGLKTLKDDHNIIHRDVKPTNILVNSRGQIKICDFGVS  448
             L  +     E   + +    + GL+               T   V +            
Sbjct  87   DLLSEKGAFSEREAKFIMKQILEGLE----------SGSSLTTF-VGTPW----------  125

Query  449  GNLVASIAKTNIGCQSYMAPERIAGGGVQQSGATGGGTYSVQSDIWSLGLTIIECAIGRY  508
                            YMAPE + G             Y  + D+WSLG  + E   G+ 
Sbjct  126  ----------------YMAPEVLGGNP-----------YGPKVDVWSLGCILYELLTGKP  158

Query  509  PYPPETFNNIFSQLHAIVHG--DPPTLPEEGYSEEAHAFVHACLDKNPSKRPSYSTLLRH  566
            P+P    N I+     I+      P LP    SEEA   +   L K+PSKR + +  L+H
Sbjct  159  PFPGINGNEIY---ELIIDQPYAFPELPSN-LSEEAKDLLKKLLKKDPSKRLTATQALQH  214

Query  567  PWL  569
            PW 
Sbjct  215  PWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 110 bits (278),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 73/313 (23%), Positives = 118/313 (38%), Gaps = 73/313 (23%)

Query  271  VERLDELGKGNYGTVYKVRHSRPHMRKPGMGLRGIISRPAENSTPDSTSAAKPQDNLSGY  330
            +   ++LG+G +G VYK                G                 K +   +  
Sbjct  1    LTLGEKLGEGAFGEVYK----------------GT---------------LKGEGENTKI  29

Query  331  IMAMKEIRLELDENKFAQIIMELDILHRCVSPFIIDFYGAFFQEGAVYMCVEYMDGGSID  390
             +A+K ++   DE +    + E  I+ +   P I+   G   Q   +Y+  EYM GG + 
Sbjct  30   KVAVKTLKEGADEEEREDFLEEASIMKKLDHPNIVKLLGVCTQGEPLYIVTEYMPGGDLL  89

Query  391  K-LYKDGVPENILRKV--ALSTVMGLKTLKDDHNIIHRDVKPTNILVNSRGQIKICDFGV  447
              L K      +   +  AL    G++ L +  N +HRD+   N LV+    +KI DFG+
Sbjct  90   DFLRKHKRKLTLKDLLSMALQIAKGMEYL-ESKNFVHRDLAARNCLVSENLVVKISDFGL  148

Query  448  S-------GNLVASIAKTNIGCQSYMAPERIAGGGVQQSGATGGGTYSVQSDIWSLGLTI  500
            S               K  I    +MAPE +             G ++ +SD+WS G+ +
Sbjct  149  SRDIYDDDYYRKRGGGKLPI---KWMAPESLK-----------DGKFTSKSDVWSFGVLL  194

Query  501  IE-CAIGRYPYP----PETFNNIFS--QLHAIVHGDPPTLPEEGYSEEAHAFVHACLDKN  553
             E   +G  PYP     E    +    +L       P   P+E Y          C   +
Sbjct  195  WEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQ-----PENCPDELYDLMKQ-----CWAYD  244

Query  554  PSKRPSYSTLLRH  566
            P  RP++S L+  
Sbjct  245  PEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.312    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 830306770


Query= TCONS_00002804

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  111     7e-29
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            101     8e-25


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 111 bits (281),  Expect = 7e-29, Method: Composition-based stats.
 Identities = 57/253 (23%), Positives = 91/253 (36%), Gaps = 86/253 (34%)

Query  272  ERLDELGKGNYGTVYKVRHSRPHMRKPGMGLRGIISRPAENSTPDSTSAAKPQDNLSGYI  331
            E L +LG G++GTVYK +H                                     +G I
Sbjct  2    EVLRKLGSGSFGTVYKAKH-----------------------------------RDTGKI  26

Query  332  MAMKEIRLEL-DENKFAQIIMELDILHRCVSPFIIDFYGAFFQEGAVYMCVEYMDGGSID  390
            +A+K+I+ E   + K   I+ E+ IL +   P I+  Y AF  +  +Y+ +EY++GGS+ 
Sbjct  27   VAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRLYDAFEDKDNLYLVLEYVEGGSLF  86

Query  391  KLYKDG--VPENILRKVALSTVMGLKTLKDDHNIIHRDVKPTNILVNSRGQIKICDFGVS  448
             L  +     E   + +    + GL+               T   V +            
Sbjct  87   DLLSEKGAFSEREAKFIMKQILEGLE----------SGSSLTTF-VGTPW----------  125

Query  449  GNLVASIAKTNIGCQSYMAPERIAGGGVQQSGATGGGTYSVQSDIWSLGLTIIECAIGRY  508
                            YMAPE + G             Y  + D+WSLG  + E   G+ 
Sbjct  126  ----------------YMAPEVLGGNP-----------YGPKVDVWSLGCILYELLTGKP  158

Query  509  PYPPETFNNIFSQ  521
            P+P    N I+  
Sbjct  159  PFPGINGNEIYEL  171


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 101 bits (255),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 65/288 (23%), Positives = 106/288 (37%), Gaps = 77/288 (27%)

Query  271  VERLDELGKGNYGTVYKVRHSRPHMRKPGMGLRGIISRPAENSTPDSTSAAKPQDNLSGY  330
            +   ++LG+G +G VYK                G                 K +   +  
Sbjct  1    LTLGEKLGEGAFGEVYK----------------GT---------------LKGEGENTKI  29

Query  331  IMAMKEIRLELDENKFAQIIMELDILHRCVSPFIIDFYGAFFQEGAVYMCVEYMDGGSID  390
             +A+K ++   DE +    + E  I+ +   P I+   G   Q   +Y+  EYM GG + 
Sbjct  30   KVAVKTLKEGADEEEREDFLEEASIMKKLDHPNIVKLLGVCTQGEPLYIVTEYMPGGDLL  89

Query  391  K-LYKDGVPENILRKV--ALSTVMGLKTLKDDHNIIHRDVKPTNILVNSRGQIKICDFGV  447
              L K      +   +  AL    G++ L +  N +HRD+   N LV+    +KI DFG+
Sbjct  90   DFLRKHKRKLTLKDLLSMALQIAKGMEYL-ESKNFVHRDLAARNCLVSENLVVKISDFGL  148

Query  448  S-------GNLVASIAKTNIGCQSYMAPERIAGGGVQQSGATGGGTYSVQSDIWSLGLTI  500
            S               K  I    +MAPE +             G ++ +SD+WS G+ +
Sbjct  149  SRDIYDDDYYRKRGGGKLPI---KWMAPESLK-----------DGKFTSKSDVWSFGVLL  194

Query  501  IE-CAIGRYPYPPETFNNIFSQLHVSFKPLSQLFRMVEHCLMPFQGYR  547
             E   +G  PYP                   ++   +E       GYR
Sbjct  195  WEIFTLGEQPYPG--------------MSNEEVLEFLE------DGYR  222



Lambda      K        H        a         alpha
   0.314    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00007972

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  192     2e-57
CDD:427019 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphi...  122     7e-34
CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide o...  73.8    6e-17


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 192 bits (489),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 96/312 (31%), Positives = 141/312 (45%), Gaps = 40/312 (13%)

Query  113  YGAKTLIVESGRAGGTCVNVGCVPKKMTWNFASINEALHVGEHYGYDIPKDVKINYRQFK  172
             G K  ++E     GTC   GCV  K     A   E   +                    
Sbjct  22   LGGKVTLIE---DEGTCPYGGCVLSKALLGAAEAPEIASLWA---------------DLY  63

Query  173  ETRDAVVKRLNGAYERNWGKEGIDLVHGRARFVEPKVIEVTLNDGAKARYSAPHILIATG  232
            + ++ VVK+LN   E   G E + +  G  + V  +     L DG     +   ++IATG
Sbjct  64   KRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEE-----LVDGDGETITYDRLVIATG  118

Query  233  GRPIIPPVKGAEHG-------ITSDGFFEIEELPPKVAVVGAGYIAVELAGVMAAVGVET  285
             RP +PP+ G E         + S     ++ LP +V VVG GYI VELA  +A +G E 
Sbjct  119  ARPRLPPIPGVELNVGFLVRTLDSAEALRLKLLPKRVVVVGGGYIGVELAAALAKLGKEV  178

Query  286  HMFIRGETMLRKFDPMIQKTMTERYEATGVHIHKKHGGFKEVQLVKDGKGKDKVLKLIGN  345
             +    + +LR FD  I   + +  E  GV +            VK+  G    +++I  
Sbjct  179  TLIEALDRLLRAFDEEISAALEKALEKNGVEVRLGTS-------VKEIIGDGDGVEVILK  231

Query  346  DGSEEEFNELLWAIGRQPEVEDLHLEIPGVKLNESGHVVVDQYQNTSAEGVYALGDVT-G  404
            DG+E + + ++ AIGR+P  E   LE  G++L+E G +VVD+Y  TS  G+YA GD   G
Sbjct  232  DGTEIDADLVVVAIGRRPNTEL--LEAAGLELDERGGIVVDEYLRTSVPGIYAAGDCRVG  289

Query  405  VAELTPVAIAAG  416
              EL   A+A G
Sbjct  290  GPELAQNAVAQG  301


>CDD:427019 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide oxidoreductase, 
dimerization domain.  This family includes both 
class I and class II oxidoreductases and also NADH oxidases 
and peroxidases.
Length=109

 Score = 122 bits (308),  Expect = 7e-34, Method: Composition-based stats.
 Identities = 40/109 (37%), Positives = 61/109 (56%), Gaps = 6/109 (6%)

Query  439  IPTVVFAHPEVGTIGLTEPQARQRYGDDKVKVYYTKFTAMYYDVLPTEEKKKNPTEFKIV  498
            IP+VVF  PE+ ++GLTE +A+++ G+  VKV    F A    +             K+V
Sbjct  1    IPSVVFTDPEIASVGLTEEEAKEKGGE--VKVGKFPFAANGRALAY----GDTDGFVKLV  54

Query  499  CVGPEEKVVGLHILGLGVGEMLQGFGVAIKMGATKKDFDSCVAIHPTSA  547
                  K++G HI+G   GE++Q   +AIKMGAT +D  + + IHPT +
Sbjct  55   ADRETGKILGAHIVGPNAGELIQEAALAIKMGATVEDLANTIHIHPTLS  103


>CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=80

 Score = 73.8 bits (182),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (4%)

Query  261  KVAVVGAGYIAVELAGVMAAVGVETHMFIRGETMLRKFDPMIQKTMTERYEATGVHIHKK  320
            +V VVG GYI +ELAG +A +G +  +  R + +L  FDP I K + E+ E  G+     
Sbjct  1    RVVVVGGGYIGLELAGALARLGSKVTVVERRDRLLPGFDPEIAKILQEKLEKNGIEFLL-  59

Query  321  HGGFKEVQLVKDGKGKDKVLK  341
                    +  +G G   VL 
Sbjct  60   --NTTVEAIEGNGDGVVVVLT  78



Lambda      K        H        a         alpha
   0.317    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690414096


Query= TCONS_00007973

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  165     7e-50
CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide o...  72.2    7e-17


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 165 bits (421),  Expect = 7e-50, Method: Composition-based stats.
 Identities = 84/285 (29%), Positives = 126/285 (44%), Gaps = 39/285 (14%)

Query  19   GRVCS---CVPKKMTWNFASINEALHVGEHYGYDIPKDVKINYRQFKETRDAVVKRLNGA  75
               C    CV  K     A   E   +                    + ++ VVK+LN  
Sbjct  32   EGTCPYGGCVLSKALLGAAEAPEIASLWA---------------DLYKRKEEVVKKLNNG  76

Query  76   YERNWGKEGIDLVHGRARFVEPKVIEVTLNDGAKARYSAPHILIATGGRPIIPPVKGAEH  135
             E   G E + +  G  + V  +     L DG     +   ++IATG RP +PP+ G E 
Sbjct  77   IEVLLGTEVVSIDPGAKKVVLEE-----LVDGDGETITYDRLVIATGARPRLPPIPGVEL  131

Query  136  G-------ITSDGFFEIEELPPKVAVVGAGYIAVELAGVMAAVGVETHMFIRGETMLRKF  188
                    + S     ++ LP +V VVG GYI VELA  +A +G E  +    + +LR F
Sbjct  132  NVGFLVRTLDSAEALRLKLLPKRVVVVGGGYIGVELAAALAKLGKEVTLIEALDRLLRAF  191

Query  189  DPMIQKTMTERYEATGVHIHKKHGGFKEVQLVKDGKGKDKVLKLIGNDGSEEEFNELLWA  248
            D  I   + +  E  GV +            VK+  G    +++I  DG+E + + ++ A
Sbjct  192  DEEISAALEKALEKNGVEVRLGTS-------VKEIIGDGDGVEVILKDGTEIDADLVVVA  244

Query  249  IGRQPEVEDLHLEIPGVKLNESGHVVVDQYQNTSAEGVYALGDVT  293
            IGR+P  E   LE  G++L+E G +VVD+Y  TS  G+YA GD  
Sbjct  245  IGRRPNTEL--LEAAGLELDERGGIVVDEYLRTSVPGIYAAGDCR  287


>CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=80

 Score = 72.2 bits (178),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (4%)

Query  151  KVAVVGAGYIAVELAGVMAAVGVETHMFIRGETMLRKFDPMIQKTMTERYEATGVHIHKK  210
            +V VVG GYI +ELAG +A +G +  +  R + +L  FDP I K + E+ E  G+     
Sbjct  1    RVVVVGGGYIGLELAGALARLGSKVTVVERRDRLLPGFDPEIAKILQEKLEKNGIEFLL-  59

Query  211  HGGFKEVQLVKDGKGKDKVLK  231
                    +  +G G   VL 
Sbjct  60   --NTTVEAIEGNGDGVVVVLT  78



Lambda      K        H        a         alpha
   0.318    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00007974

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  192     3e-57
CDD:427019 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphi...  130     7e-37
CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide o...  73.8    7e-17


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 192 bits (489),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 96/312 (31%), Positives = 141/312 (45%), Gaps = 40/312 (13%)

Query  113  YGAKTLIVESGRAGGTCVNVGCVPKKMTWNFASINEALHVGEHYGYDIPKDVKINYRQFK  172
             G K  ++E     GTC   GCV  K     A   E   +                    
Sbjct  22   LGGKVTLIE---DEGTCPYGGCVLSKALLGAAEAPEIASLWA---------------DLY  63

Query  173  ETRDAVVKRLNGAYERNWGKEGIDLVHGRARFVEPKVIEVTLNDGAKARYSAPHILIATG  232
            + ++ VVK+LN   E   G E + +  G  + V  +     L DG     +   ++IATG
Sbjct  64   KRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEE-----LVDGDGETITYDRLVIATG  118

Query  233  GRPIIPPVKGAEHG-------ITSDGFFEIEELPPKVAVVGAGYIAVELAGVMAAVGVET  285
             RP +PP+ G E         + S     ++ LP +V VVG GYI VELA  +A +G E 
Sbjct  119  ARPRLPPIPGVELNVGFLVRTLDSAEALRLKLLPKRVVVVGGGYIGVELAAALAKLGKEV  178

Query  286  HMFIRGETMLRKFDPMIQKTMTERYEATGVHIHKKHGGFKEVQLVKDGKGKDKVLKLIGN  345
             +    + +LR FD  I   + +  E  GV +            VK+  G    +++I  
Sbjct  179  TLIEALDRLLRAFDEEISAALEKALEKNGVEVRLGTS-------VKEIIGDGDGVEVILK  231

Query  346  DGSEEEFNELLWAIGRQPEVEDLHLEIPGVKLNESGHVVVDQYQNTSAEGVYALGDVT-G  404
            DG+E + + ++ AIGR+P  E   LE  G++L+E G +VVD+Y  TS  G+YA GD   G
Sbjct  232  DGTEIDADLVVVAIGRRPNTEL--LEAAGLELDERGGIVVDEYLRTSVPGIYAAGDCRVG  289

Query  405  VAELTPVAIAAG  416
              EL   A+A G
Sbjct  290  GPELAQNAVAQG  301


>CDD:427019 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide oxidoreductase, 
dimerization domain.  This family includes both 
class I and class II oxidoreductases and also NADH oxidases 
and peroxidases.
Length=109

 Score = 130 bits (330),  Expect = 7e-37, Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 64/115 (56%), Gaps = 6/115 (5%)

Query  439  IPTVVFAHPEVGTIGLTEPQARQRYGDDKVKVYYTKFTAMYYDVLPTEEKKKNPTEFKIV  498
            IP+VVF  PE+ ++GLTE +A+++ G+  VKV    F A    +             K+V
Sbjct  1    IPSVVFTDPEIASVGLTEEEAKEKGGE--VKVGKFPFAANGRALAY----GDTDGFVKLV  54

Query  499  CVGPEEKVVGLHILGLGVGEMLQGFGVAIKMGATKKDFDSCVAIHPTSAEELVTM  553
                  K++G HI+G   GE++Q   +AIKMGAT +D  + + IHPT +E LV  
Sbjct  55   ADRETGKILGAHIVGPNAGELIQEAALAIKMGATVEDLANTIHIHPTLSEALVEA  109


>CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=80

 Score = 73.8 bits (182),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (4%)

Query  261  KVAVVGAGYIAVELAGVMAAVGVETHMFIRGETMLRKFDPMIQKTMTERYEATGVHIHKK  320
            +V VVG GYI +ELAG +A +G +  +  R + +L  FDP I K + E+ E  G+     
Sbjct  1    RVVVVGGGYIGLELAGALARLGSKVTVVERRDRLLPGFDPEIAKILQEKLEKNGIEFLL-  59

Query  321  HGGFKEVQLVKDGKGKDKVLK  341
                    +  +G G   VL 
Sbjct  60   --NTTVEAIEGNGDGVVVVLT  78



Lambda      K        H        a         alpha
   0.317    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690425736


Query= TCONS_00002806

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  186     2e-56
CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide o...  73.8    4e-17


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 186 bits (474),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 90/298 (30%), Positives = 134/298 (45%), Gaps = 39/298 (13%)

Query  113  YGAKTLIVESGRAGGTCVNVGCVPKKMTWNFASINEALHVGEHYGYDIPKDVKINYRQFK  172
             G K  ++E     GTC   GCV  K     A   E   +                    
Sbjct  22   LGGKVTLIE---DEGTCPYGGCVLSKALLGAAEAPEIASLWA---------------DLY  63

Query  173  ETRDAVVKRLNGAYERNWGKEGIDLVHGRARFVEPKVIEVTLNDGAKARYSAPHILIATG  232
            + ++ VVK+LN   E   G E + +  G  + V  +     L DG     +   ++IATG
Sbjct  64   KRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEE-----LVDGDGETITYDRLVIATG  118

Query  233  GRPIIPPVKGAEHG-------ITSDGFFEIEELPPKVAVVGAGYIAVELAGVMAAVGVET  285
             RP +PP+ G E         + S     ++ LP +V VVG GYI VELA  +A +G E 
Sbjct  119  ARPRLPPIPGVELNVGFLVRTLDSAEALRLKLLPKRVVVVGGGYIGVELAAALAKLGKEV  178

Query  286  HMFIRGETMLRKFDPMIQKTMTERYEATGVHIHKKHGGFKEVQLVKDGKGKDKVLKLIGN  345
             +    + +LR FD  I   + +  E  GV +            VK+  G    +++I  
Sbjct  179  TLIEALDRLLRAFDEEISAALEKALEKNGVEVRLGTS-------VKEIIGDGDGVEVILK  231

Query  346  DGSEEEFNELLWAIGRQPEVEDLHLEIPGVKLNESGHVVVDQYQNTSAEGVYALGDVT  403
            DG+E + + ++ AIGR+P  E   LE  G++L+E G +VVD+Y  TS  G+YA GD  
Sbjct  232  DGTEIDADLVVVAIGRRPNTEL--LEAAGLELDERGGIVVDEYLRTSVPGIYAAGDCR  287


>CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=80

 Score = 73.8 bits (182),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (4%)

Query  261  KVAVVGAGYIAVELAGVMAAVGVETHMFIRGETMLRKFDPMIQKTMTERYEATGVHIHKK  320
            +V VVG GYI +ELAG +A +G +  +  R + +L  FDP I K + E+ E  G+     
Sbjct  1    RVVVVGGGYIGLELAGALARLGSKVTVVERRDRLLPGFDPEIAKILQEKLEKNGIEFLL-  59

Query  321  HGGFKEVQLVKDGKGKDKVLK  341
                    +  +G G   VL 
Sbjct  60   --NTTVEAIEGNGDGVVVVLT  78



Lambda      K        H        a         alpha
   0.317    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00002805

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  192     3e-57
CDD:427019 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphi...  130     7e-37
CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide o...  73.8    7e-17


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 192 bits (489),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 96/312 (31%), Positives = 141/312 (45%), Gaps = 40/312 (13%)

Query  113  YGAKTLIVESGRAGGTCVNVGCVPKKMTWNFASINEALHVGEHYGYDIPKDVKINYRQFK  172
             G K  ++E     GTC   GCV  K     A   E   +                    
Sbjct  22   LGGKVTLIE---DEGTCPYGGCVLSKALLGAAEAPEIASLWA---------------DLY  63

Query  173  ETRDAVVKRLNGAYERNWGKEGIDLVHGRARFVEPKVIEVTLNDGAKARYSAPHILIATG  232
            + ++ VVK+LN   E   G E + +  G  + V  +     L DG     +   ++IATG
Sbjct  64   KRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEE-----LVDGDGETITYDRLVIATG  118

Query  233  GRPIIPPVKGAEHG-------ITSDGFFEIEELPPKVAVVGAGYIAVELAGVMAAVGVET  285
             RP +PP+ G E         + S     ++ LP +V VVG GYI VELA  +A +G E 
Sbjct  119  ARPRLPPIPGVELNVGFLVRTLDSAEALRLKLLPKRVVVVGGGYIGVELAAALAKLGKEV  178

Query  286  HMFIRGETMLRKFDPMIQKTMTERYEATGVHIHKKHGGFKEVQLVKDGKGKDKVLKLIGN  345
             +    + +LR FD  I   + +  E  GV +            VK+  G    +++I  
Sbjct  179  TLIEALDRLLRAFDEEISAALEKALEKNGVEVRLGTS-------VKEIIGDGDGVEVILK  231

Query  346  DGSEEEFNELLWAIGRQPEVEDLHLEIPGVKLNESGHVVVDQYQNTSAEGVYALGDVT-G  404
            DG+E + + ++ AIGR+P  E   LE  G++L+E G +VVD+Y  TS  G+YA GD   G
Sbjct  232  DGTEIDADLVVVAIGRRPNTEL--LEAAGLELDERGGIVVDEYLRTSVPGIYAAGDCRVG  289

Query  405  VAELTPVAIAAG  416
              EL   A+A G
Sbjct  290  GPELAQNAVAQG  301


>CDD:427019 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide oxidoreductase, 
dimerization domain.  This family includes both 
class I and class II oxidoreductases and also NADH oxidases 
and peroxidases.
Length=109

 Score = 130 bits (330),  Expect = 7e-37, Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 64/115 (56%), Gaps = 6/115 (5%)

Query  439  IPTVVFAHPEVGTIGLTEPQARQRYGDDKVKVYYTKFTAMYYDVLPTEEKKKNPTEFKIV  498
            IP+VVF  PE+ ++GLTE +A+++ G+  VKV    F A    +             K+V
Sbjct  1    IPSVVFTDPEIASVGLTEEEAKEKGGE--VKVGKFPFAANGRALAY----GDTDGFVKLV  54

Query  499  CVGPEEKVVGLHILGLGVGEMLQGFGVAIKMGATKKDFDSCVAIHPTSAEELVTM  553
                  K++G HI+G   GE++Q   +AIKMGAT +D  + + IHPT +E LV  
Sbjct  55   ADRETGKILGAHIVGPNAGELIQEAALAIKMGATVEDLANTIHIHPTLSEALVEA  109


>CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=80

 Score = 73.8 bits (182),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (4%)

Query  261  KVAVVGAGYIAVELAGVMAAVGVETHMFIRGETMLRKFDPMIQKTMTERYEATGVHIHKK  320
            +V VVG GYI +ELAG +A +G +  +  R + +L  FDP I K + E+ E  G+     
Sbjct  1    RVVVVGGGYIGLELAGALARLGSKVTVVERRDRLLPGFDPEIAKILQEKLEKNGIEFLL-  59

Query  321  HGGFKEVQLVKDGKGKDKVLK  341
                    +  +G G   VL 
Sbjct  60   --NTTVEAIEGNGDGVVVVLT  78



Lambda      K        H        a         alpha
   0.317    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690425736


Query= TCONS_00002808

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  186     2e-56
CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide o...  73.8    4e-17


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 186 bits (474),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 90/298 (30%), Positives = 134/298 (45%), Gaps = 39/298 (13%)

Query  113  YGAKTLIVESGRAGGTCVNVGCVPKKMTWNFASINEALHVGEHYGYDIPKDVKINYRQFK  172
             G K  ++E     GTC   GCV  K     A   E   +                    
Sbjct  22   LGGKVTLIE---DEGTCPYGGCVLSKALLGAAEAPEIASLWA---------------DLY  63

Query  173  ETRDAVVKRLNGAYERNWGKEGIDLVHGRARFVEPKVIEVTLNDGAKARYSAPHILIATG  232
            + ++ VVK+LN   E   G E + +  G  + V  +     L DG     +   ++IATG
Sbjct  64   KRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEE-----LVDGDGETITYDRLVIATG  118

Query  233  GRPIIPPVKGAEHG-------ITSDGFFEIEELPPKVAVVGAGYIAVELAGVMAAVGVET  285
             RP +PP+ G E         + S     ++ LP +V VVG GYI VELA  +A +G E 
Sbjct  119  ARPRLPPIPGVELNVGFLVRTLDSAEALRLKLLPKRVVVVGGGYIGVELAAALAKLGKEV  178

Query  286  HMFIRGETMLRKFDPMIQKTMTERYEATGVHIHKKHGGFKEVQLVKDGKGKDKVLKLIGN  345
             +    + +LR FD  I   + +  E  GV +            VK+  G    +++I  
Sbjct  179  TLIEALDRLLRAFDEEISAALEKALEKNGVEVRLGTS-------VKEIIGDGDGVEVILK  231

Query  346  DGSEEEFNELLWAIGRQPEVEDLHLEIPGVKLNESGHVVVDQYQNTSAEGVYALGDVT  403
            DG+E + + ++ AIGR+P  E   LE  G++L+E G +VVD+Y  TS  G+YA GD  
Sbjct  232  DGTEIDADLVVVAIGRRPNTEL--LEAAGLELDERGGIVVDEYLRTSVPGIYAAGDCR  287


>CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=80

 Score = 73.8 bits (182),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (4%)

Query  261  KVAVVGAGYIAVELAGVMAAVGVETHMFIRGETMLRKFDPMIQKTMTERYEATGVHIHKK  320
            +V VVG GYI +ELAG +A +G +  +  R + +L  FDP I K + E+ E  G+     
Sbjct  1    RVVVVGGGYIGLELAGALARLGSKVTVVERRDRLLPGFDPEIAKILQEKLEKNGIEFLL-  59

Query  321  HGGFKEVQLVKDGKGKDKVLK  341
                    +  +G G   VL 
Sbjct  60   --NTTVEAIEGNGDGVVVVLT  78



Lambda      K        H        a         alpha
   0.317    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00002809

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00002810

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.128    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00007975

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  132     2e-38


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 132 bits (334),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 86/152 (57%), Gaps = 5/152 (3%)

Query  30   GFGAMGLNSAMGTDLNLEQSEPVLLKAIELGCTFWDTAVAYKDGENEKLLGDFIKKHNV-  88
            G G   L    G  ++ E++   L  A+E G  F DTA  Y DG++E+LLG+ +K + V 
Sbjct  2    GLGTWQLGGGWGP-ISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDYPVK  60

Query  89   RDRLFVASKCGFDVFGPERKVTNSAAHIKEYIEGTINRLG-FTPDLYYLHRIDPNTPLEE  147
            RD++ +A+K              S  +I++ +E ++ RLG    DLYYLH  DP+TP+EE
Sbjct  61   RDKVVIATKVPDGD--GPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWPDPDTPIEE  118

Query  148  SIGALDELRRAGKTKYIGLSECSAATLRRAHA  179
            +  AL+EL++ GK + IG+S   A  + +A  
Sbjct  119  TWDALEELKKEGKIRAIGVSNFDAEQIEKALT  150



Lambda      K        H        a         alpha
   0.322    0.139    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00002812

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  179     2e-56


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 179 bits (457),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 75/228 (33%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query  16   GFGAMGLNSAMGTDLNLEQSEPVLLKAIELGCTFWDTAVAYKDGENEKLLGDFIKKHNV-  74
            G G   L    G  ++ E++   L  A+E G  F DTA  Y DG++E+LLG+ +K + V 
Sbjct  2    GLGTWQLGGGWGP-ISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDYPVK  60

Query  75   RDRLFVASKCGFDVFGPERKVTNSAAHIKEYIEGTINRLG-FTPDLYYLHRIDPNTPLEE  133
            RD++ +A+K              S  +I++ +E ++ RLG    DLYYLH  DP+TP+EE
Sbjct  61   RDKVVIATKVPDGD--GPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWPDPDTPIEE  118

Query  134  SIGALDELRRAGKTKYIGLSECSAATLRRA--HAIAKIDAVQAEYSAFETLHETTGLIQT  191
            +  AL+EL++ GK + IG+S   A  + +A       I AVQ EY+      E   L++ 
Sbjct  119  TWDALEELKKEGKIRAIGVSNFDAEQIEKALTKGKIPIVAVQVEYNLLRRRQE-EELLEY  177

Query  192  AKELGVAFVAFSPLGHGWLVDDFQYKSPDDFAPNDFRRTGMSNHLQVE  239
             K+ G+  +A+SPLG G L      K   D       R  +       
Sbjct  178  CKKNGIPLIAYSPLGGGLLT----GKYTRDPDKGPGERRRLLKKGTPL  221



Lambda      K        H        a         alpha
   0.319    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00002814

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  132     1e-38


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 132 bits (334),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 86/152 (57%), Gaps = 5/152 (3%)

Query  16   GFGAMGLNSAMGTDLNLEQSEPVLLKAIELGCTFWDTAVAYKDGENEKLLGDFIKKHNV-  74
            G G   L    G  ++ E++   L  A+E G  F DTA  Y DG++E+LLG+ +K + V 
Sbjct  2    GLGTWQLGGGWGP-ISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDYPVK  60

Query  75   RDRLFVASKCGFDVFGPERKVTNSAAHIKEYIEGTINRLG-FTPDLYYLHRIDPNTPLEE  133
            RD++ +A+K              S  +I++ +E ++ RLG    DLYYLH  DP+TP+EE
Sbjct  61   RDKVVIATKVPDGD--GPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWPDPDTPIEE  118

Query  134  SIGALDELRRAGKTKYIGLSECSAATLRRAHA  165
            +  AL+EL++ GK + IG+S   A  + +A  
Sbjct  119  TWDALEELKKEGKIRAIGVSNFDAEQIEKALT  150



Lambda      K        H        a         alpha
   0.321    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00002813

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  221     3e-71


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 221 bits (565),  Expect = 3e-71, Method: Composition-based stats.
 Identities = 92/279 (33%), Positives = 142/279 (51%), Gaps = 16/279 (6%)

Query  16   GFGAMGLNSAMGTDLNLEQSEPVLLKAIELGCTFWDTAVAYKDGENEKLLGDFIKKHNV-  74
            G G   L    G  ++ E++   L  A+E G  F DTA  Y DG++E+LLG+ +K + V 
Sbjct  2    GLGTWQLGGGWGP-ISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDYPVK  60

Query  75   RDRLFVASKCGFDVFGPERKVTNSAAHIKEYIEGTINRLG-FTPDLYYLHRIDPNTPLEE  133
            RD++ +A+K              S  +I++ +E ++ RLG    DLYYLH  DP+TP+EE
Sbjct  61   RDKVVIATKVPDGD--GPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWPDPDTPIEE  118

Query  134  SIGALDELRRAGKTKYIGLSECSAATLRRA--HAIAKIDAVQAEYSAFETLHETTGLIQT  191
            +  AL+EL++ GK + IG+S   A  + +A       I AVQ EY+      E   L++ 
Sbjct  119  TWDALEELKKEGKIRAIGVSNFDAEQIEKALTKGKIPIVAVQVEYNLLRRRQE-EELLEY  177

Query  192  AKELGVAFVAFSPLGHGWLVDDFQYKSPDDFAPNDFRRTVPKFQGENFHKNKAIVDEIKK  251
             K+ G+  +A+SPLG G L      K   D       R   +   +    N   ++ +++
Sbjct  178  CKKNGIPLIAYSPLGGGLLT----GKYTRDPDKGPGER--RRLLKKGTPLNLEALEALEE  231

Query  252  LAIRKGCSVAQIALAWV--SAQGLIAIPGTTKPSRLEEN  288
            +A   G S AQ+AL W        I IPG + P +LE+N
Sbjct  232  IAKEHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDN  270



Lambda      K        H        a         alpha
   0.319    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00007976

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  221     2e-71


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 221 bits (566),  Expect = 2e-71, Method: Composition-based stats.
 Identities = 92/279 (33%), Positives = 142/279 (51%), Gaps = 16/279 (6%)

Query  30   GFGAMGLNSAMGTDLNLEQSEPVLLKAIELGCTFWDTAVAYKDGENEKLLGDFIKKHNV-  88
            G G   L    G  ++ E++   L  A+E G  F DTA  Y DG++E+LLG+ +K + V 
Sbjct  2    GLGTWQLGGGWGP-ISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDYPVK  60

Query  89   RDRLFVASKCGFDVFGPERKVTNSAAHIKEYIEGTINRLG-FTPDLYYLHRIDPNTPLEE  147
            RD++ +A+K              S  +I++ +E ++ RLG    DLYYLH  DP+TP+EE
Sbjct  61   RDKVVIATKVPDGD--GPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWPDPDTPIEE  118

Query  148  SIGALDELRRAGKTKYIGLSECSAATLRRA--HAIAKIDAVQAEYSAFETLHETTGLIQT  205
            +  AL+EL++ GK + IG+S   A  + +A       I AVQ EY+      E   L++ 
Sbjct  119  TWDALEELKKEGKIRAIGVSNFDAEQIEKALTKGKIPIVAVQVEYNLLRRRQE-EELLEY  177

Query  206  AKELGVAFVAFSPLGHGWLVDDFQYKSPDDFAPNDFRRTVPKFQGENFHKNKAIVDEIKK  265
             K+ G+  +A+SPLG G L      K   D       R   +   +    N   ++ +++
Sbjct  178  CKKNGIPLIAYSPLGGGLLT----GKYTRDPDKGPGER--RRLLKKGTPLNLEALEALEE  231

Query  266  LAIRKGCSVAQIALAWV--SAQGLIAIPGTTKPSRLEEN  302
            +A   G S AQ+AL W        I IPG + P +LE+N
Sbjct  232  IAKEHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDN  270



Lambda      K        H        a         alpha
   0.319    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00007977

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00007978

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  221     2e-71


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 221 bits (566),  Expect = 2e-71, Method: Composition-based stats.
 Identities = 92/279 (33%), Positives = 142/279 (51%), Gaps = 16/279 (6%)

Query  30   GFGAMGLNSAMGTDLNLEQSEPVLLKAIELGCTFWDTAVAYKDGENEKLLGDFIKKHNV-  88
            G G   L    G  ++ E++   L  A+E G  F DTA  Y DG++E+LLG+ +K + V 
Sbjct  2    GLGTWQLGGGWGP-ISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDYPVK  60

Query  89   RDRLFVASKCGFDVFGPERKVTNSAAHIKEYIEGTINRLG-FTPDLYYLHRIDPNTPLEE  147
            RD++ +A+K              S  +I++ +E ++ RLG    DLYYLH  DP+TP+EE
Sbjct  61   RDKVVIATKVPDGD--GPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWPDPDTPIEE  118

Query  148  SIGALDELRRAGKTKYIGLSECSAATLRRA--HAIAKIDAVQAEYSAFETLHETTGLIQT  205
            +  AL+EL++ GK + IG+S   A  + +A       I AVQ EY+      E   L++ 
Sbjct  119  TWDALEELKKEGKIRAIGVSNFDAEQIEKALTKGKIPIVAVQVEYNLLRRRQE-EELLEY  177

Query  206  AKELGVAFVAFSPLGHGWLVDDFQYKSPDDFAPNDFRRTVPKFQGENFHKNKAIVDEIKK  265
             K+ G+  +A+SPLG G L      K   D       R   +   +    N   ++ +++
Sbjct  178  CKKNGIPLIAYSPLGGGLLT----GKYTRDPDKGPGER--RRLLKKGTPLNLEALEALEE  231

Query  266  LAIRKGCSVAQIALAWV--SAQGLIAIPGTTKPSRLEEN  302
            +A   G S AQ+AL W        I IPG + P +LE+N
Sbjct  232  IAKEHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDN  270



Lambda      K        H        a         alpha
   0.319    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00007979

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00007980

Length=25


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82528100


Query= TCONS_00002816

Length=377


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 447362496


Query= TCONS_00002817

Length=327


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00002818

Length=341


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00002819

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00002820

Length=266


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00002821

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  64.2    4e-13


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 64.2 bits (157),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 8/121 (7%)

Query  107  AGELALVNLIFP-LSAIHLSNVADLLGISWSTCRKIHRATGWMA-------TALLAVHVV  158
             G LAL  L    L A+  + +  L G+S+      HR  G +A         L  ++ +
Sbjct  1    LGILALALLPLLLLLALRNNPLEWLTGLSYDRLLLFHRWLGRLAFLLALLHVILYLIYWL  60

Query  159  VAVQDHEFSFPLSEMQNLFTIIGAASLGAVALLSISWFRRWSYEVFLRSHQIFAILFVYG  218
                +      L    N+  II    L  +A+ S+  FRR SYE+FL  H + A+ F+  
Sbjct  61   RFSLEGILDLLLKRPYNILGIIALVLLVLLAITSLPPFRRLSYELFLYLHILLAVAFLLL  120

Query  219  T  219
             
Sbjct  121  V  121



Lambda      K        H        a         alpha
   0.325    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 670731238


Query= TCONS_00002822

Length=536


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00002823

Length=1079
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372162 pfam12520, DUF3723, Protein of unknown function (DUF37...  722     0.0  


>CDD:372162 pfam12520, DUF3723, Protein of unknown function (DUF3723).  This 
family of proteins is found in eukaryotes. Proteins in this 
family are typically between 374 and 1069 amino acids in 
length. There is a conserved LGF sequence motif.
Length=504

 Score = 722 bits (1867),  Expect = 0.0, Method: Composition-based stats.
 Identities = 275/509 (54%), Positives = 352/509 (69%), Gaps = 10/509 (2%)

Query  62   LDVDNHVPAIVSQGDLAGALRNANVSQRALLTNDPHQLPQLRFAAG-QLRALHGRHRVQA  120
            LD +NH+PA++S+ DLA ALR A +SQ  LLT+   Q P L F +G QL  LHGRHR++A
Sbjct  1    LDPENHIPAVISREDLAAALRAAGLSQEDLLTSREPQDPHLEFPSGVQLTCLHGRHRIRA  60

Query  121  GAEVLPPADRWWTVDLYLDEIGEELKTSLVEEYANQRKPTDGEIYRKIRQYEGEGNEAFR  180
              E LPP+DRWW VDLYLD+I +EL+TSLVEEY+N++KP+DGEIYRKIRQY+ EGN  F 
Sbjct  61   AEEFLPPSDRWWVVDLYLDDISDELRTSLVEEYSNEQKPSDGEIYRKIRQYQREGNAEFE  120

Query  181  QRWFVRLSRSNQERLDQLDNRRNRRLRLAFDRLLPIPGLWPHGMRISMLHRLIATGCVEE  240
            +RW+ RLS S ++ L QL   +NR L  AFD LLPIPGLW  G+R+ +LHRL+A  C EE
Sbjct  121  RRWWARLSPSKRKDLRQL--FKNRELCSAFDALLPIPGLW-AGLRLGVLHRLLALKCDEE  177

Query  241  ILTYLGHIVDFWSSLVASDPDSIKRIDPDTVDALQLLAPGKSRIDTKIACGLVLGGQAFA  300
            IL YL HI  FWSSLV  DP ++ ++D +TV+ L+L+APG S+ D +   GL+L G+ F 
Sbjct  178  ILHYLDHIKKFWSSLVNGDPAAMSKVDAETVELLELMAPGASKADARHVQGLMLSGEIFP  237

Query  301  EFSDEERRVIWNRLANFDGLVPSLYTFFEDFKYLESCAHCVKRLFG-SSTESVWKAMSSI  359
             FSD ERR IW RL +FDGL+PSL+TFFED KYLE CA  ++RL G     +V  A+   
Sbjct  238  AFSDSERREIWERLLSFDGLIPSLHTFFEDLKYLEPCAKALRRLLGLKKKRTVRSALEGA  297

Query  360  FVPYSGSEVEERLIQTSESTFRREAATDAERLDMGYLQIWLYAMRHYPLMPPDPKSDDEL  419
            F P   S  EE LIQTSESTFR    + AER D+ Y Q+WLYAMRH+P +PPD    + L
Sbjct  298  FQP--DSGGEECLIQTSESTFREIPGSAAERFDLAYRQLWLYAMRHFPELPPDTPRKESL  355

Query  420  LAKPSRAIADKRAIYEMAELARRLGFQSPEIEAIIDGSPDREIARAALLQARKPDRFRYD  479
            LAKP    AD+   Y+MA LA +LGF+SPEI+ ++  SPDR+IAR ALL+ARKPD + YD
Sbjct  356  LAKPLVQGADEVVWYDMAVLAVKLGFKSPEIKKLLQQSPDRQIAREALLKARKPDLYEYD  415

Query  480  ERHFDTLVSRIVDCFAAAVADQPEIVHELLADSTVKP--RARCGMPRMRTHKQDTPLLFV  537
            +   ++LV RIV+CFAAA     +     L  +        RCG P    H++D  LLF+
Sbjct  416  DDLLESLVRRIVECFAAAQPISAQPRPPELTTNVESLPKERRCGRPYEAAHERDRRLLFL  475

Query  538  DRLH-AEVEVADTITTFFVRRCVYFAFFG  565
            D L+ A+    +T+T+FFVRR VYFAFFG
Sbjct  476  DHLYNADQSPGETLTSFFVRRSVYFAFFG  504



Lambda      K        H        a         alpha
   0.316    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1391806108


Query= TCONS_00002824

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366796 pfam01758, SBF, Sodium Bile acid symporter family. Thi...  143     7e-42


>CDD:366796 pfam01758, SBF, Sodium Bile acid symporter family.  This family 
consists of Na+/bile acid co-transporters. These transmembrane 
proteins function in the liver in the uptake of bile acids 
from portal blood plasma a process mediated by the co-transport 
of Na+. Also in the family is ARC3 from S. cerevisiae 
- this is a putative transmembrane protein involved in resistance 
to arsenic compounds.
Length=191

 Score = 143 bits (363),  Expect = 7e-42, Method: Composition-based stats.
 Identities = 73/199 (37%), Positives = 109/199 (55%), Gaps = 12/199 (6%)

Query  90   AIGLLVMMYPILCKVRYESLHHVFRTRQIWIQIAFSIFVNWIIAPFFMLALAWAFLPD--  147
            AIGL +MM+P+  KVRYE    +FR  +    +   + + W+I P  M  LA  FL D  
Sbjct  1    AIGLFLMMFPMGLKVRYEDFKELFRRPK---ALLLGLLLQWVIMPLLMFLLAKFFLRDFP  57

Query  148  -EPELRQGLILVGLARCIAMVLIWTGLAGGDGEYCAILVAVNSILQMVLFAPMGVFFIQV  206
              PEL  GLILVG A   AM  +WT LA GD E   ++VA++++L ++    +      +
Sbjct  58   LPPELAVGLILVGCAPGGAMSNVWTYLAKGDVELSVVMVALSTLLAILFTPLLLYLLAGL  117

Query  207  ISGD-SVAFEYSTAAKSVAVFLGIPLGAAILTRFTLRWVASPRWYDEVFLKWASPWSLIG  265
            +    ++       AKSV +++ IPL A ILTR+ L     P+ ++   L    P SLIG
Sbjct  118  LVEGTTLPVPIEEIAKSVLIYVIIPLIAGILTRYFL-----PKHFESRILPAVPPISLIG  172

Query  266  LLFTILVLFASQGRQVVHQ  284
            LL TI+V+F+ +G  +V +
Sbjct  173  LLLTIVVIFSLKGELIVSR  191



Lambda      K        H        a         alpha
   0.329    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00002825

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00002826

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00007981

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.538    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00002828

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   179     9e-56


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 179 bits (456),  Expect = 9e-56, Method: Composition-based stats.
 Identities = 73/170 (43%), Positives = 91/170 (54%), Gaps = 8/170 (5%)

Query  59   TAGKVPVGPQGAEFTVAKQGDAPTIDTDFYFFFGKAEVVMKAAPGTGVVSSIVLES---D  115
                V V   G   T+ K        + FY+ +GK E  +KAA G GVV++  L S   D
Sbjct  2    GGDNVSVSNGGLTLTLDKYT-GSGFQSKFYYLYGKVEARIKAARGAGVVTAFYLSSEDWD  60

Query  116  DLDEVDWEVLGGDTTQVQTNYFGKGDTTTYDRGTYVPVATPQETFHTYTIDWTKDAVTWS  175
            D DE+D+E LG DT QVQTN +G G         +     P   FHTY+I W  D +TW 
Sbjct  61   DHDEIDFEFLGNDTGQVQTNVYGNG-KGNRGEQRFSLWFDPTADFHTYSILWNPDKITWY  119

Query  176  IDGAVVRTLTYNDAKGGTRFPQTPMRLRLGSWAGGDPSNPKG--TIEWAG  223
            +DG  VRTL  NDA G   +PQTPMRL +  W GGD + P G   I+WAG
Sbjct  120  VDGVPVRTLKNNDAGGVP-YPQTPMRLYVSLWPGGDWATPGGGVKIDWAG  168



Lambda      K        H        a         alpha
   0.306    0.122    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00007982

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   91.1    1e-24


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 91.1 bits (227),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 46/87 (53%), Gaps = 4/87 (5%)

Query  59   TAGKVPVGPQGAEFTVAKQGDAPTIDTDFYFFFGKAEVVMKAAPGTGVVSSIVLES---D  115
                V V   G   T+ K        + FY+ +GK E  +KAA G GVV++  L S   D
Sbjct  2    GGDNVSVSNGGLTLTLDKYT-GSGFQSKFYYLYGKVEARIKAARGAGVVTAFYLSSEDWD  60

Query  116  DLDEVDWEVLGGDTTQVQTNYFGKGDT  142
            D DE+D+E LG DT QVQTN +G G  
Sbjct  61   DHDEIDFEFLGNDTGQVQTNVYGNGKG  87



Lambda      K        H        a         alpha
   0.315    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00002829

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   59.1    2e-12


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 59.1 bits (144),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/67 (36%), Positives = 33/67 (49%), Gaps = 4/67 (6%)

Query  59   TAGKVPVGPQGAEFTVAKQGDAPTIDTDFYFFFGKAEVVMKAAPGTGVVSSIVLES---D  115
                V V   G   T+ K        + FY+ +GK E  +KAA G GVV++  L S   D
Sbjct  2    GGDNVSVSNGGLTLTLDKYT-GSGFQSKFYYLYGKVEARIKAARGAGVVTAFYLSSEDWD  60

Query  116  DLDEVDW  122
            D DE+D+
Sbjct  61   DHDEIDF  67



Lambda      K        H        a         alpha
   0.318    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00002830

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   179     9e-56


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 179 bits (456),  Expect = 9e-56, Method: Composition-based stats.
 Identities = 73/170 (43%), Positives = 91/170 (54%), Gaps = 8/170 (5%)

Query  59   TAGKVPVGPQGAEFTVAKQGDAPTIDTDFYFFFGKAEVVMKAAPGTGVVSSIVLES---D  115
                V V   G   T+ K        + FY+ +GK E  +KAA G GVV++  L S   D
Sbjct  2    GGDNVSVSNGGLTLTLDKYT-GSGFQSKFYYLYGKVEARIKAARGAGVVTAFYLSSEDWD  60

Query  116  DLDEVDWEVLGGDTTQVQTNYFGKGDTTTYDRGTYVPVATPQETFHTYTIDWTKDAVTWS  175
            D DE+D+E LG DT QVQTN +G G         +     P   FHTY+I W  D +TW 
Sbjct  61   DHDEIDFEFLGNDTGQVQTNVYGNG-KGNRGEQRFSLWFDPTADFHTYSILWNPDKITWY  119

Query  176  IDGAVVRTLTYNDAKGGTRFPQTPMRLRLGSWAGGDPSNPKG--TIEWAG  223
            +DG  VRTL  NDA G   +PQTPMRL +  W GGD + P G   I+WAG
Sbjct  120  VDGVPVRTLKNNDAGGVP-YPQTPMRLYVSLWPGGDWATPGGGVKIDWAG  168



Lambda      K        H        a         alpha
   0.306    0.122    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00002831

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   179     9e-56


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 179 bits (456),  Expect = 9e-56, Method: Composition-based stats.
 Identities = 73/170 (43%), Positives = 91/170 (54%), Gaps = 8/170 (5%)

Query  59   TAGKVPVGPQGAEFTVAKQGDAPTIDTDFYFFFGKAEVVMKAAPGTGVVSSIVLES---D  115
                V V   G   T+ K        + FY+ +GK E  +KAA G GVV++  L S   D
Sbjct  2    GGDNVSVSNGGLTLTLDKYT-GSGFQSKFYYLYGKVEARIKAARGAGVVTAFYLSSEDWD  60

Query  116  DLDEVDWEVLGGDTTQVQTNYFGKGDTTTYDRGTYVPVATPQETFHTYTIDWTKDAVTWS  175
            D DE+D+E LG DT QVQTN +G G         +     P   FHTY+I W  D +TW 
Sbjct  61   DHDEIDFEFLGNDTGQVQTNVYGNG-KGNRGEQRFSLWFDPTADFHTYSILWNPDKITWY  119

Query  176  IDGAVVRTLTYNDAKGGTRFPQTPMRLRLGSWAGGDPSNPKG--TIEWAG  223
            +DG  VRTL  NDA G   +PQTPMRL +  W GGD + P G   I+WAG
Sbjct  120  VDGVPVRTLKNNDAGGVP-YPQTPMRLYVSLWPGGDWATPGGGVKIDWAG  168



Lambda      K        H        a         alpha
   0.306    0.122    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00007983

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   168     1e-53


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 168 bits (427),  Expect = 1e-53, Method: Composition-based stats.
 Identities = 68/160 (43%), Positives = 85/160 (53%), Gaps = 6/160 (4%)

Query  59   TAGKVPVGPQGAEFTVAKQGDAPTIDTDFYFFFGKAEVVMKAAPGTGVVSSIVLES---D  115
                V V   G   T+ K        + FY+ +GK E  +KAA G GVV++  L S   D
Sbjct  2    GGDNVSVSNGGLTLTLDKYT-GSGFQSKFYYLYGKVEARIKAARGAGVVTAFYLSSEDWD  60

Query  116  DLDEVDWEVLGGDTTQVQTNYFGKGDTTTYDRGTYVPVATPQETFHTYTIDWTKDAVTWS  175
            D DE+D+E LG DT QVQTN +G G         +     P   FHTY+I W  D +TW 
Sbjct  61   DHDEIDFEFLGNDTGQVQTNVYGNG-KGNRGEQRFSLWFDPTADFHTYSILWNPDKITWY  119

Query  176  IDGAVVRTLTYNDAKGGTRFPQTPMRLRLGSWAGGDPSNP  215
            +DG  VRTL  NDA G   +PQTPMRL +  W GGD + P
Sbjct  120  VDGVPVRTLKNNDAGGVP-YPQTPMRLYVSLWPGGDWATP  158



Lambda      K        H        a         alpha
   0.315    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00002832

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   59.1    2e-12


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 59.1 bits (144),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/67 (36%), Positives = 33/67 (49%), Gaps = 4/67 (6%)

Query  59   TAGKVPVGPQGAEFTVAKQGDAPTIDTDFYFFFGKAEVVMKAAPGTGVVSSIVLES---D  115
                V V   G   T+ K        + FY+ +GK E  +KAA G GVV++  L S   D
Sbjct  2    GGDNVSVSNGGLTLTLDKYT-GSGFQSKFYYLYGKVEARIKAARGAGVVTAFYLSSEDWD  60

Query  116  DLDEVDW  122
            D DE+D+
Sbjct  61   DHDEIDF  67



Lambda      K        H        a         alpha
   0.318    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00002833

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   179     9e-56


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 179 bits (456),  Expect = 9e-56, Method: Composition-based stats.
 Identities = 73/170 (43%), Positives = 91/170 (54%), Gaps = 8/170 (5%)

Query  59   TAGKVPVGPQGAEFTVAKQGDAPTIDTDFYFFFGKAEVVMKAAPGTGVVSSIVLES---D  115
                V V   G   T+ K        + FY+ +GK E  +KAA G GVV++  L S   D
Sbjct  2    GGDNVSVSNGGLTLTLDKYT-GSGFQSKFYYLYGKVEARIKAARGAGVVTAFYLSSEDWD  60

Query  116  DLDEVDWEVLGGDTTQVQTNYFGKGDTTTYDRGTYVPVATPQETFHTYTIDWTKDAVTWS  175
            D DE+D+E LG DT QVQTN +G G         +     P   FHTY+I W  D +TW 
Sbjct  61   DHDEIDFEFLGNDTGQVQTNVYGNG-KGNRGEQRFSLWFDPTADFHTYSILWNPDKITWY  119

Query  176  IDGAVVRTLTYNDAKGGTRFPQTPMRLRLGSWAGGDPSNPKG--TIEWAG  223
            +DG  VRTL  NDA G   +PQTPMRL +  W GGD + P G   I+WAG
Sbjct  120  VDGVPVRTLKNNDAGGVP-YPQTPMRLYVSLWPGGDWATPGGGVKIDWAG  168



Lambda      K        H        a         alpha
   0.306    0.122    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00002834

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   179     9e-56


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 179 bits (456),  Expect = 9e-56, Method: Composition-based stats.
 Identities = 73/170 (43%), Positives = 91/170 (54%), Gaps = 8/170 (5%)

Query  59   TAGKVPVGPQGAEFTVAKQGDAPTIDTDFYFFFGKAEVVMKAAPGTGVVSSIVLES---D  115
                V V   G   T+ K        + FY+ +GK E  +KAA G GVV++  L S   D
Sbjct  2    GGDNVSVSNGGLTLTLDKYT-GSGFQSKFYYLYGKVEARIKAARGAGVVTAFYLSSEDWD  60

Query  116  DLDEVDWEVLGGDTTQVQTNYFGKGDTTTYDRGTYVPVATPQETFHTYTIDWTKDAVTWS  175
            D DE+D+E LG DT QVQTN +G G         +     P   FHTY+I W  D +TW 
Sbjct  61   DHDEIDFEFLGNDTGQVQTNVYGNG-KGNRGEQRFSLWFDPTADFHTYSILWNPDKITWY  119

Query  176  IDGAVVRTLTYNDAKGGTRFPQTPMRLRLGSWAGGDPSNPKG--TIEWAG  223
            +DG  VRTL  NDA G   +PQTPMRL +  W GGD + P G   I+WAG
Sbjct  120  VDGVPVRTLKNNDAGGVP-YPQTPMRLYVSLWPGGDWATPGGGVKIDWAG  168



Lambda      K        H        a         alpha
   0.306    0.122    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00007984

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   66.1    8e-15


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 66.1 bits (162),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 31/97 (32%), Positives = 41/97 (42%), Gaps = 18/97 (19%)

Query  59   TAGKVPVGPQGAEFTVAKQGDAPTIDTDFYFFFGKAEVVMKAAPGTGVVSSIVLES---D  115
                V V   G   T+ K        + FY+ +GK E  +KAA G GVV++  L S   D
Sbjct  2    GGDNVSVSNGGLTLTLDKYT-GSGFQSKFYYLYGKVEARIKAARGAGVVTAFYLSSEDWD  60

Query  116  DLDEVDWVSLLVYHVF-------VQTNYFGKGDTTTY  145
            D DE+D+        F       VQTN +G G     
Sbjct  61   DHDEIDF-------EFLGNDTGQVQTNVYGNGKGNRG  90



Lambda      K        H        a         alpha
   0.317    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00002835

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   179     9e-56


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 179 bits (456),  Expect = 9e-56, Method: Composition-based stats.
 Identities = 73/170 (43%), Positives = 91/170 (54%), Gaps = 8/170 (5%)

Query  59   TAGKVPVGPQGAEFTVAKQGDAPTIDTDFYFFFGKAEVVMKAAPGTGVVSSIVLES---D  115
                V V   G   T+ K        + FY+ +GK E  +KAA G GVV++  L S   D
Sbjct  2    GGDNVSVSNGGLTLTLDKYT-GSGFQSKFYYLYGKVEARIKAARGAGVVTAFYLSSEDWD  60

Query  116  DLDEVDWEVLGGDTTQVQTNYFGKGDTTTYDRGTYVPVATPQETFHTYTIDWTKDAVTWS  175
            D DE+D+E LG DT QVQTN +G G         +     P   FHTY+I W  D +TW 
Sbjct  61   DHDEIDFEFLGNDTGQVQTNVYGNG-KGNRGEQRFSLWFDPTADFHTYSILWNPDKITWY  119

Query  176  IDGAVVRTLTYNDAKGGTRFPQTPMRLRLGSWAGGDPSNPKG--TIEWAG  223
            +DG  VRTL  NDA G   +PQTPMRL +  W GGD + P G   I+WAG
Sbjct  120  VDGVPVRTLKNNDAGGVP-YPQTPMRLYVSLWPGGDWATPGGGVKIDWAG  168



Lambda      K        H        a         alpha
   0.306    0.122    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00007985

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   62.6    5e-13


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 62.6 bits (153),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 24/69 (35%), Positives = 34/69 (49%), Gaps = 4/69 (6%)

Query  59   TAGKVPVGPQGAEFTVAKQGDAPTIDTDFYFFFGKAEVVMKAAPGTGVVSSIVLES---D  115
                V V   G   T+ K        + FY+ +GK E  +KAA G GVV++  L S   D
Sbjct  2    GGDNVSVSNGGLTLTLDKYT-GSGFQSKFYYLYGKVEARIKAARGAGVVTAFYLSSEDWD  60

Query  116  DLDEVDWYW  124
            D DE+D+ +
Sbjct  61   DHDEIDFEF  69



Lambda      K        H        a         alpha
   0.319    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00002836

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core...  144     6e-41


>CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain 
(G, H, P, S and T).  tRNA-synt_2b is a family of largely threonyl-tRNA 
members.
Length=181

 Score = 144 bits (364),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 98/219 (45%), Gaps = 46/219 (21%)

Query  162  EDESYGLKPMNCPGHCLLFKSQNHSYRELPIRYADFSPLHRNEISGALSGLTRVRRFHQD  221
              +   LKP N PGH LLF+ +    ++LP++ A F    R+E SG   GL RVR+FHQD
Sbjct  7    NGDELALKPTNEPGHTLLFREEGLRSKDLPLKLAQFGTCFRHEASGDTRGLIRVRQFHQD  66

Query  222  DGHIFCRPQQIKGEIASALGFVDMVMTTFGLGPYRLVLSTRPEKDFIGSLELWDSAEAQL  281
            D HIF  P Q   E+   +  +D V +  GL    + LS                     
Sbjct  67   DAHIFHAPGQSPDELEDYIKLIDRVYSRLGLEVRVVRLSNSDG-----------------  109

Query  282  REALDNSGREWAMNEGDGAFYGPKIDIQLQDQA-GKYHQLSTIQLDM-NLPQRFGLEYQV  339
                              AFYGPK+D ++   + GK  Q  TIQ D   LP+R G+ Y+ 
Sbjct  110  -----------------SAFYGPKLDFEVVFPSLGKQRQTGTIQNDGFRLPRRLGIRYKD  152

Query  340  AEGEEDYNPATPGRATPVLVHRANFGSLERFLALLIEQY  378
             + E            P ++HRA  G +ERFLA ++E  
Sbjct  153  EDNESK---------FPYMIHRAGLG-VERFLAAILENN  181



Lambda      K        H        a         alpha
   0.317    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00007987

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core...  144     6e-41


>CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain 
(G, H, P, S and T).  tRNA-synt_2b is a family of largely threonyl-tRNA 
members.
Length=181

 Score = 144 bits (364),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 98/219 (45%), Gaps = 46/219 (21%)

Query  162  EDESYGLKPMNCPGHCLLFKSQNHSYRELPIRYADFSPLHRNEISGALSGLTRVRRFHQD  221
              +   LKP N PGH LLF+ +    ++LP++ A F    R+E SG   GL RVR+FHQD
Sbjct  7    NGDELALKPTNEPGHTLLFREEGLRSKDLPLKLAQFGTCFRHEASGDTRGLIRVRQFHQD  66

Query  222  DGHIFCRPQQIKGEIASALGFVDMVMTTFGLGPYRLVLSTRPEKDFIGSLELWDSAEAQL  281
            D HIF  P Q   E+   +  +D V +  GL    + LS                     
Sbjct  67   DAHIFHAPGQSPDELEDYIKLIDRVYSRLGLEVRVVRLSNSDG-----------------  109

Query  282  REALDNSGREWAMNEGDGAFYGPKIDIQLQDQA-GKYHQLSTIQLDM-NLPQRFGLEYQV  339
                              AFYGPK+D ++   + GK  Q  TIQ D   LP+R G+ Y+ 
Sbjct  110  -----------------SAFYGPKLDFEVVFPSLGKQRQTGTIQNDGFRLPRRLGIRYKD  152

Query  340  AEGEEDYNPATPGRATPVLVHRANFGSLERFLALLIEQY  378
             + E            P ++HRA  G +ERFLA ++E  
Sbjct  153  EDNESK---------FPYMIHRAGLG-VERFLAAILENN  181



Lambda      K        H        a         alpha
   0.317    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00002837

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core...  144     6e-41


>CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain 
(G, H, P, S and T).  tRNA-synt_2b is a family of largely threonyl-tRNA 
members.
Length=181

 Score = 144 bits (364),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 98/219 (45%), Gaps = 46/219 (21%)

Query  162  EDESYGLKPMNCPGHCLLFKSQNHSYRELPIRYADFSPLHRNEISGALSGLTRVRRFHQD  221
              +   LKP N PGH LLF+ +    ++LP++ A F    R+E SG   GL RVR+FHQD
Sbjct  7    NGDELALKPTNEPGHTLLFREEGLRSKDLPLKLAQFGTCFRHEASGDTRGLIRVRQFHQD  66

Query  222  DGHIFCRPQQIKGEIASALGFVDMVMTTFGLGPYRLVLSTRPEKDFIGSLELWDSAEAQL  281
            D HIF  P Q   E+   +  +D V +  GL    + LS                     
Sbjct  67   DAHIFHAPGQSPDELEDYIKLIDRVYSRLGLEVRVVRLSNSDG-----------------  109

Query  282  REALDNSGREWAMNEGDGAFYGPKIDIQLQDQA-GKYHQLSTIQLDM-NLPQRFGLEYQV  339
                              AFYGPK+D ++   + GK  Q  TIQ D   LP+R G+ Y+ 
Sbjct  110  -----------------SAFYGPKLDFEVVFPSLGKQRQTGTIQNDGFRLPRRLGIRYKD  152

Query  340  AEGEEDYNPATPGRATPVLVHRANFGSLERFLALLIEQY  378
             + E            P ++HRA  G +ERFLA ++E  
Sbjct  153  EDNESK---------FPYMIHRAGLG-VERFLAAILENN  181



Lambda      K        H        a         alpha
   0.317    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00007989

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  113     8e-30
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  55.8    4e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 113 bits (285),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 56/182 (31%), Positives = 88/182 (48%), Gaps = 6/182 (3%)

Query  199  LDSHWCWIQPLFNFVYRPAFTRDM----KINGPYYSDTLLNAILSHSVRWCKSEPKI--G  252
            LD  +    P F  ++RP+F RD          Y S  LL AIL+    + +S       
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  253  PILESFDGGAQFSDRAVTGLYDSLRVGYAGIPTIQTLLILSAQECGRGNRTQAWLYSGMA  312
             + +    G  F  RA+  +++      + +  +Q LL+L   E G G+R   W Y G+A
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGLA  120

Query  313  FRLLDDLGISIDSRKYPDAAQLSDEDIEIRNRLFWSCYFWDKLVSLYFGRSPTMQNSHVS  372
             RL   LG+  D      + +L  E+ E+R RLFW+C++ D+L+SL  GR P + +S + 
Sbjct  121  IRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDID  180

Query  373  PP  374
             P
Sbjct  181  LP  182


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 55.8 bits (135),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 19/33 (58%), Positives = 23/33 (70%), Gaps = 0/33 (0%)

Query  25  FSCEACRKRKVKCNGASPSCSRCAARGEACVYS  57
            +C+ CRKRKVKC+G  P+CSRC   G  C YS
Sbjct  1   TACDNCRKRKVKCDGKKPACSRCIKNGLECTYS  33



Lambda      K        H        a         alpha
   0.318    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00007988

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  106     8e-29


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 106 bits (267),  Expect = 8e-29, Method: Composition-based stats.
 Identities = 56/182 (31%), Positives = 88/182 (48%), Gaps = 6/182 (3%)

Query  34   LDSHWCWIQPLFNFVYRPAFTRDM----KINGPYYSDTLLNAILSHSVRWCKSEPKI--G  87
            LD  +    P F  ++RP+F RD          Y S  LL AIL+    + +S       
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  88   PILESFDGGAQFSDRAVTGLYDSLRVGYAGIPTIQTLLILSAQECGRGNRTQAWLYSGMA  147
             + +    G  F  RA+  +++      + +  +Q LL+L   E G G+R   W Y G+A
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGLA  120

Query  148  FRLLDDLGISIDSRKYPDAAQLSDEDIEIRNRLFWSCYFWDKLVSLYFGRSPTMQNSHVS  207
             RL   LG+  D      + +L  E+ E+R RLFW+C++ D+L+SL  GR P + +S + 
Sbjct  121  IRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDID  180

Query  208  PP  209
             P
Sbjct  181  LP  182



Lambda      K        H        a         alpha
   0.324    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00002838

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         171     4e-50


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 171 bits (436),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 142/299 (47%), Gaps = 15/299 (5%)

Query  7    QYRLVQSIPLIPVGIAFFASVIAPETPRYLVSKHRHDEGRSVLARLRGRQVSDPAIEDEF  66
             +R+   + L+P  +     +  PE+PR+LV K R +E R VLA+LRG    D  +++  
Sbjct  169  GWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIK  228

Query  67   KSIDAQVRTKAMDLASVTHWEAFKETQLNPNYRQRFWLLIAMQTISQWTGGNGITYYVAT  126
             S+      +A   A    W+    T      RQR  + + +Q   Q TG N I YY  T
Sbjct  229  DSL------EAGQEAEKASWKELFST---KTRRQRLLIGVMLQIFQQLTGINAIFYYSTT  279

Query  127  IFQYAGIDGNARSLVSSGAYGIVKLVFTMAFTWGLIDYLGRRRCALAGLSLQLAAHIYMG  186
            IF+  G+     S + +   G+V  VFT      L+D  GRR   L G +      + +G
Sbjct  280  IFENLGLSD---SFLVTIIVGVVNFVFTF-IAIFLVDRFGRRPLLLLGAAGMAICFVILG  335

Query  187  AYMGLQPGSSTNRSASNAAIASVFIYAVGWSIGLCTIPYLYGAEIFPTRIRNVSYAISMS  246
                L    S +  A   AI  + ++   +++G   +P++  +E+FP  +R+ + A++ +
Sbjct  336  IVALLGV--SKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATA  393

Query  247  LHWFFQFAVVRVTPNMFVALDVWGAYVFWAIICFSGLVILGIWMPETKGVPIERMGDLF  305
             +W   F +  + P +  A+ +   +  +A +    ++ +  ++PETKG  +E + +LF
Sbjct  394  ANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.324    0.138    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00002839

Length=715
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  118     3e-30


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 118 bits (297),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 73/271 (27%), Positives = 116/271 (43%), Gaps = 22/271 (8%)

Query  161  LDSHWCWIQPLFNFVYRPAFTRDM----KINGPYYSDTLLNAILSHSVRWCKSEPKI--G  214
            LD  +    P F  ++RP+F RD          Y S  LL AIL+    + +S       
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  215  PILESFDGGAQFSDRAVTGLYDSLRVGYAGIPTIQTLLILSAQECGRGNRTQAWLYSGMA  274
             + +    G  F  RA+  +++      + +  +Q LL+L   E G G+R   W Y G+A
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGLA  120

Query  275  FRLLDDLGISIDSRKYPDAAQLSDEDIEIRNRLFWSCYFWDKLVSLYFGRSPTMQNSHVS  334
             RL   LG+  D      + +L  E+ E+R RLFW+C++ D+L+SL  GR P + +S + 
Sbjct  121  IRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDID  180

Query  335  PP----RTILDDTSEIEIWTPHGVIFPEGTHYPPTQAHSTSCFMRMCGLAEILNEI---L  387
             P       L ++   +  T   +I  E     P              L++IL++I   L
Sbjct  181  LPLPCDDDDLWESDSADEVT-LPLISLESKSIKPPLFLIK--------LSKILSKILGSL  231

Query  388  IHIYDPIRQVSEAEFHDCVQEQARNLTEWWD  418
            + I   + Q         V+E  R L  W  
Sbjct  232  LSIRSTLDQRDLQLKLSWVRELERALDNWRK  262



Lambda      K        H        a         alpha
   0.319    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 903649392


Query= TCONS_00002840

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428190 pfam04909, Amidohydro_2, Amidohydrolase. These protein...  97.6    5e-24


>CDD:428190 pfam04909, Amidohydro_2, Amidohydrolase.  These proteins are 
amidohydrolases that are related to pfam01979.
Length=283

 Score = 97.6 bits (243),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 73/297 (25%), Positives = 101/297 (34%), Gaps = 38/297 (13%)

Query  67   DSHMHVV---------EPSRYPVSPGAAYIPSSHTLEEALAFESTLGMENIVLVQPSIYG  117
            D+H H+             R P      Y P   + E+ LA  + LG+   V+V  S  G
Sbjct  2    DAHAHLWPDDERIGFDPGGRLPFMKRRGYDPRDASPEDLLALGAALGVARAVVVAASCRG  61

Query  118  TDNSCLLEALERIGPSHGRGVVVI--DPVTTCPTTLSAWHTLGVRGVRVNLKSVGKVLSE  175
             +N    EAL R G     GV V+  DP         A    G RGVR+N    G  L  
Sbjct  62   ANNRVAAEALARPGRF-LGGVAVVPLDPEDAAAELERAVGEAGFRGVRLNPHPGGDPLLG  120

Query  176  AELVETLSQHAELIRTLGWMIQLYLPLH---------MMPMLERIVPSL-GVKICIDHFG  225
              L   +    E +  LG  + ++                +L  +      +KI +DH G
Sbjct  121  DRLDRPI---YEALEELGLPVDIHTGFGDRPEDTRAIQPLLLAGVARKFPDLKIVLDHGG  177

Query  226  SPQLPPPPIVTNGQFNPYTLPGFSALISLLEAGQTYVKISAPYRLSKDKQLRDLGAITQE  285
             P +P              L   +AL  L      YVK+S  YR                
Sbjct  178  GPWIP------------EGLDDPAALALLARRPNVYVKLSGLYRDLYFDAPLADRPYLAR  225

Query  286  LLRRA-PRRVIYATDWPHTRFHGVDVRPFTELCLQLCASETGLTERVFKSNAEELLG  341
            LL    P R+++ +DWPH                 L A      E++   NA  L G
Sbjct  226  LLEAFGPDRILFGSDWPHPPLEISPDDGVLLDLPLLLALSDEEREKILGGNAARLYG  282



Lambda      K        H        a         alpha
   0.321    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0723    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00002841

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00002842

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00002843

Length=116
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g su...  52.9    5e-11


>CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g subunit. 
 The Fo sector of the ATP synthase is a membrane bound complex 
which mediates proton transport. It is composed of nine different 
polypeptide subunits (a, b, c, d, e, f, g F6, A6L). 
The function of subunit g is currently unknown. The conserved 
region covers all but the very N-terminus of the member sequences. 
No prokaryotic members have been identified thus far.
Length=92

 Score = 52.9 bits (128),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 18/33 (55%), Positives = 23/33 (70%), Gaps = 1/33 (3%)

Query  84   AFVDSLIPPTIYYSKVGLELAKLVFRGQNMTPP  116
            A V+SLIP  +YYSKVGLEL K   + + + PP
Sbjct  1    AKVESLIPHAVYYSKVGLELFKQYAKVE-LAPP  32



Lambda      K        H        a         alpha
   0.312    0.123    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00007990

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g su...  132     4e-41


>CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g subunit. 
 The Fo sector of the ATP synthase is a membrane bound complex 
which mediates proton transport. It is composed of nine different 
polypeptide subunits (a, b, c, d, e, f, g F6, A6L). 
The function of subunit g is currently unknown. The conserved 
region covers all but the very N-terminus of the member sequences. 
No prokaryotic members have been identified thus far.
Length=92

 Score = 132 bits (335),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 45/103 (44%), Positives = 61/103 (59%), Gaps = 11/103 (11%)

Query  84   AFVDCLIPPTIYYSKVGLELAKLVFRGQNMTPPNLATFQAYFQPLVNAARNPATLKNFSF  143
            A V+ LIP  +YYSKVGLEL K   + + + PP  A FQ+ +Q L         L + S 
Sbjct  1    AKVESLIPHAVYYSKVGLELFKQYAKVE-LAPPTPAEFQSVYQQLFKTR-----LASPS-  53

Query  144  QNVISRVRNASKKELAFAGVTAAEVIGFFTVGEMIGRMNIVGY  186
                 RV+N + KE   AG+  AEV+G+F+VGE+IGR  +VGY
Sbjct  54   ----GRVKNLTVKEALLAGLVGAEVLGWFSVGEIIGRRKLVGY  92



Lambda      K        H        a         alpha
   0.318    0.129    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00002844

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00002845

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g su...  134     4e-42


>CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g subunit. 
 The Fo sector of the ATP synthase is a membrane bound complex 
which mediates proton transport. It is composed of nine different 
polypeptide subunits (a, b, c, d, e, f, g F6, A6L). 
The function of subunit g is currently unknown. The conserved 
region covers all but the very N-terminus of the member sequences. 
No prokaryotic members have been identified thus far.
Length=92

 Score = 134 bits (341),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 46/103 (45%), Positives = 62/103 (60%), Gaps = 11/103 (11%)

Query  84   AFVDSLIPPTIYYSKVGLELAKLVFRGQNMTPPNLATFQAYFQPLVNAARNPATLKNFSF  143
            A V+SLIP  +YYSKVGLEL K   + + + PP  A FQ+ +Q L         L + S 
Sbjct  1    AKVESLIPHAVYYSKVGLELFKQYAKVE-LAPPTPAEFQSVYQQLFKTR-----LASPS-  53

Query  144  QNVISRVRNASKKELAFAGVTAAEVIGFFTVGEMIGRMNIVGY  186
                 RV+N + KE   AG+  AEV+G+F+VGE+IGR  +VGY
Sbjct  54   ----GRVKNLTVKEALLAGLVGAEVLGWFSVGEIIGRRKLVGY  92



Lambda      K        H        a         alpha
   0.317    0.128    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00007991

Length=81
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g su...  94.9    4e-28


>CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g subunit. 
 The Fo sector of the ATP synthase is a membrane bound complex 
which mediates proton transport. It is composed of nine different 
polypeptide subunits (a, b, c, d, e, f, g F6, A6L). 
The function of subunit g is currently unknown. The conserved 
region covers all but the very N-terminus of the member sequences. 
No prokaryotic members have been identified thus far.
Length=92

 Score = 94.9 bits (237),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 30/74 (41%), Positives = 42/74 (57%), Gaps = 10/74 (14%)

Query  1   MTPPNLATFQAYFQPLVNAARNPATLKNFSFQNVISRVRNASKKELAFAGVTAAEVIGFF  60
           + PP  A FQ+ +Q L         L + S      RV+N + KE   AG+  AEV+G+F
Sbjct  29  LAPPTPAEFQSVYQQLFKTR-----LASPS-----GRVKNLTVKEALLAGLVGAEVLGWF  78

Query  61  TVGEMIGRMNIVGY  74
           +VGE+IGR  +VGY
Sbjct  79  SVGEIIGRRKLVGY  92



Lambda      K        H        a         alpha
   0.323    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00007992

Length=116
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g su...  52.9    5e-11


>CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g subunit. 
 The Fo sector of the ATP synthase is a membrane bound complex 
which mediates proton transport. It is composed of nine different 
polypeptide subunits (a, b, c, d, e, f, g F6, A6L). 
The function of subunit g is currently unknown. The conserved 
region covers all but the very N-terminus of the member sequences. 
No prokaryotic members have been identified thus far.
Length=92

 Score = 52.9 bits (128),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 18/33 (55%), Positives = 23/33 (70%), Gaps = 1/33 (3%)

Query  84   AFVDSLIPPTIYYSKVGLELAKLVFRGQNMTPP  116
            A V+SLIP  +YYSKVGLEL K   + + + PP
Sbjct  1    AKVESLIPHAVYYSKVGLELFKQYAKVE-LAPP  32



Lambda      K        H        a         alpha
   0.312    0.123    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00007993

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g su...  131     7e-41


>CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g subunit. 
 The Fo sector of the ATP synthase is a membrane bound complex 
which mediates proton transport. It is composed of nine different 
polypeptide subunits (a, b, c, d, e, f, g F6, A6L). 
The function of subunit g is currently unknown. The conserved 
region covers all but the very N-terminus of the member sequences. 
No prokaryotic members have been identified thus far.
Length=92

 Score = 131 bits (333),  Expect = 7e-41, Method: Composition-based stats.
 Identities = 44/103 (43%), Positives = 61/103 (59%), Gaps = 11/103 (11%)

Query  84   AFVDCMIPPTIYYSKVGLELAKLVFRGQNMTPPNLATFQAYFQPLVNAARNPATLKNFSF  143
            A V+ +IP  +YYSKVGLEL K   + + + PP  A FQ+ +Q L         L + S 
Sbjct  1    AKVESLIPHAVYYSKVGLELFKQYAKVE-LAPPTPAEFQSVYQQLFKTR-----LASPS-  53

Query  144  QNVISRVRNASKKELAFAGVTAAEVIGFFTVGEMIGRMNIVGY  186
                 RV+N + KE   AG+  AEV+G+F+VGE+IGR  +VGY
Sbjct  54   ----GRVKNLTVKEALLAGLVGAEVLGWFSVGEIIGRRKLVGY  92



Lambda      K        H        a         alpha
   0.318    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00002849

Length=84
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g su...  97.6    4e-29


>CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g subunit. 
 The Fo sector of the ATP synthase is a membrane bound complex 
which mediates proton transport. It is composed of nine different 
polypeptide subunits (a, b, c, d, e, f, g F6, A6L). 
The function of subunit g is currently unknown. The conserved 
region covers all but the very N-terminus of the member sequences. 
No prokaryotic members have been identified thus far.
Length=92

 Score = 97.6 bits (244),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 30/74 (41%), Positives = 42/74 (57%), Gaps = 10/74 (14%)

Query  1   MTPPNLATFQAYFQPLVNAARNPATLKNFSFQNVISRVRNASKKELAFAGVTAAEVIGFF  60
           + PP  A FQ+ +Q L         L + S      RV+N + KE   AG+  AEV+G+F
Sbjct  29  LAPPTPAEFQSVYQQLFKTR-----LASPS-----GRVKNLTVKEALLAGLVGAEVLGWF  78

Query  61  TVGEMIGRMNIVGY  74
           +VGE+IGR  +VGY
Sbjct  79  SVGEIIGRRKLVGY  92



Lambda      K        H        a         alpha
   0.323    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00002846

Length=116
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g su...  52.9    5e-11


>CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g subunit. 
 The Fo sector of the ATP synthase is a membrane bound complex 
which mediates proton transport. It is composed of nine different 
polypeptide subunits (a, b, c, d, e, f, g F6, A6L). 
The function of subunit g is currently unknown. The conserved 
region covers all but the very N-terminus of the member sequences. 
No prokaryotic members have been identified thus far.
Length=92

 Score = 52.9 bits (128),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 18/33 (55%), Positives = 23/33 (70%), Gaps = 1/33 (3%)

Query  84   AFVDSLIPPTIYYSKVGLELAKLVFRGQNMTPP  116
            A V+SLIP  +YYSKVGLEL K   + + + PP
Sbjct  1    AKVESLIPHAVYYSKVGLELFKQYAKVE-LAPP  32



Lambda      K        H        a         alpha
   0.312    0.123    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00002848

Length=76
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g su...  92.6    4e-27


>CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g subunit. 
 The Fo sector of the ATP synthase is a membrane bound complex 
which mediates proton transport. It is composed of nine different 
polypeptide subunits (a, b, c, d, e, f, g F6, A6L). 
The function of subunit g is currently unknown. The conserved 
region covers all but the very N-terminus of the member sequences. 
No prokaryotic members have been identified thus far.
Length=92

 Score = 92.6 bits (231),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 30/74 (41%), Positives = 42/74 (57%), Gaps = 10/74 (14%)

Query  1   MTPPNLATFQAYFQPLVNAARNPATLKNFSFQNVISRVRNASKKELAFAGVTAAEVIGFF  60
           + PP  A FQ+ +Q L         L + S      RV+N + KE   AG+  AEV+G+F
Sbjct  29  LAPPTPAEFQSVYQQLFKTR-----LASPS-----GRVKNLTVKEALLAGLVGAEVLGWF  78

Query  61  TVGEMIGRMNIVGY  74
           +VGE+IGR  +VGY
Sbjct  79  SVGEIIGRRKLVGY  92



Lambda      K        H        a         alpha
   0.323    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00002847

Length=76
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g su...  92.6    4e-27


>CDD:461408 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g subunit. 
 The Fo sector of the ATP synthase is a membrane bound complex 
which mediates proton transport. It is composed of nine different 
polypeptide subunits (a, b, c, d, e, f, g F6, A6L). 
The function of subunit g is currently unknown. The conserved 
region covers all but the very N-terminus of the member sequences. 
No prokaryotic members have been identified thus far.
Length=92

 Score = 92.6 bits (231),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 30/74 (41%), Positives = 42/74 (57%), Gaps = 10/74 (14%)

Query  1   MTPPNLATFQAYFQPLVNAARNPATLKNFSFQNVISRVRNASKKELAFAGVTAAEVIGFF  60
           + PP  A FQ+ +Q L         L + S      RV+N + KE   AG+  AEV+G+F
Sbjct  29  LAPPTPAEFQSVYQQLFKTR-----LASPS-----GRVKNLTVKEALLAGLVGAEVLGWF  78

Query  61  TVGEMIGRMNIVGY  74
           +VGE+IGR  +VGY
Sbjct  79  SVGEIIGRRKLVGY  92



Lambda      K        H        a         alpha
   0.323    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00002850

Length=739
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  108     9e-28
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  99.6    2e-25


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 108 bits (271),  Expect = 9e-28, Method: Composition-based stats.
 Identities = 60/194 (31%), Positives = 89/194 (46%), Gaps = 44/194 (23%)

Query  245  DLLVVAPTGSGKTLSFLIPVINKIVRHHHEQEKERGIFSVIVAPTKELASQIVNEGRKLV  304
            D+LV APTGSGKTL+FL+P +  +       + + G  ++++APT+ELA QI  E +KL 
Sbjct  16   DVLVQAPTGSGKTLAFLLPALEAL------DKLDNGPQALVLAPTRELAEQIYEELKKLG  69

Query  305  HGTGVKITLMKKGMRVVDREDDDDENSHSEDSEEGSDSEQDEPSTTRKKKGKAPITKSDI  364
             G G+K+  +  G                           D      +K     +   DI
Sbjct  70   KGLGLKVASLLGG---------------------------DSRKEQLEK-----LKGPDI  97

Query  365  LVTTPLLLVNALSANRTKPMATLPLVRNIVLDEADVLLDELFREQTLDIWRACTHPELRA  424
            LV TP  L++ L   +      L  ++ +VLDEA  LLD  F     +I       + + 
Sbjct  98   LVGTPGRLLDLLQERK-----LLKNLKLLVLDEAHRLLDMGFGPDLEEI-LRRLPKKRQI  151

Query  425  SLWSATMGSNIEDL  438
             L SAT+  N+EDL
Sbjct  152  LLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 99.6 bits (249),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 42/99 (42%), Positives = 61/99 (62%), Gaps = 8/99 (8%)

Query  511  LIFTQTIPRAIALHSELRYDIPAEAGGSSRIAVLHSDLSDGQRSEIMKNFRKGEIWILVT  570
            LIF+QT     A     +  I        ++A LH DLS  +R EI+++FRKG+I +LV 
Sbjct  19   LIFSQTKKTLEAELLLEKEGI--------KVARLHGDLSQEEREEILEDFRKGKIDVLVA  70

Query  571  TDLLARGVDFRGINGVVNYDIPNSAAVYVHRVGRTGRAG  609
            TD+  RG+D   ++ V+NYD+P + A Y+ R+GR GRAG
Sbjct  71   TDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.312    0.129    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 938573040


Query= TCONS_00007994

Length=244
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:313513 pfam10294, Methyltransf_16, Lysine methyltransferase. ...  77.0    4e-18


>CDD:313513 pfam10294, Methyltransf_16, Lysine methyltransferase.  Methyltrans_16 
is a lysine methyltransferase. characterized members 
of this family are protein methyltransferases targetting Lys 
residues in specific proteins, including calmodulin, VCP, 
Kin17 and Hsp70 proteins.
Length=172

 Score = 77.0 bits (190),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 21/159 (13%)

Query  16   EELTLTLHEPSLTADNLGMKTWVSSYLLSRRLHTLLDVAPALVPSSSTTPKSDRT-LRAL  74
            +   L + E   T + +G   W ++ +LS+ L          +        ++ + L  L
Sbjct  3    DNPGLRIEED--TGNGIGGHVWDAAVVLSKYL---------EMKIFKELGANNLSGLNVL  51

Query  75   ELGAGTGLVGLSFAALRGSSATIHLTDLPDIVPNLAHNVSLNVELLTRTDAAVTTGVLDW  134
            ELG+GTGLVG++ A L    A++ +TDL + +  L  N+ LN        + V   VLDW
Sbjct  52   ELGSGTGLVGIAVALL-LPGASVTITDLEEALELLKKNIELNA-----LSSKVVVKVLDW  105

Query  135  --SVAPSPPPREEQYDLILAADPLYSPKHPKWLVDTIGH  171
              ++ P         DLILAAD +Y+      L  T+  
Sbjct  106  GENLPPDLFDGHP-VDLILAADCVYNEDSFPLLEKTLKD  143



Lambda      K        H        a         alpha
   0.317    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00002851

Length=788
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461023 pfam03715, Noc2, Noc2p family. At least one member, No...  503     3e-175


>CDD:461023 pfam03715, Noc2, Noc2p family.  At least one member, Noc2p from 
yeast, is required for a late step in 60S subunit export 
from the nucleus. It has also been shown to co-precipitate with 
Nug1p, a nuclear GTPase also required for ribosome nucleus 
export. This family was formerly known as UPF0120.
Length=296

 Score = 503 bits (1297),  Expect = 3e-175, Method: Composition-based stats.
 Identities = 175/312 (56%), Positives = 232/312 (74%), Gaps = 16/312 (5%)

Query  395  GLKETVLKASYEGVVKGSRNTTVHTLSGVNLMKNSAAELWGIDQNISYTTGFSFIRQLAM  454
             L E VLK +Y   V+  + T  HTL  +N MKNSA EL+G+DQ  SY   F +IRQLA+
Sbjct  1    SLLELVLKGTYLAFVRNCKFTNPHTLPLINFMKNSAVELFGLDQAASYQHAFLYIRQLAI  60

Query  455  HLRSSITNTSKESYKTIYNWQYTHSLDFWSRVLSQHCDGLVEAKAGKQSALRPLIYPVVQ  514
            HLR++IT  +KE+YK +YNWQY HSLDFWSRVLS  C         K+S LRPLIYP+VQ
Sbjct  61   HLRNAITTKTKEAYKQVYNWQYVHSLDFWSRVLSAAC---------KESPLRPLIYPLVQ  111

Query  515  ITLGAMRLIPTATYFPLRFQLTRALLRLSRATGTYVPLAPALLEVLNAAEMRKPPKSSTL  574
            + LGA+RLIPTA YFPLRF L R+L RLS++TGT++PLAP LLEVL + E +K PK STL
Sbjct  112  VILGAIRLIPTARYFPLRFHLIRSLNRLSQSTGTFIPLAPLLLEVLESTEFKKKPKKSTL  171

Query  575  KQLDFSTAIRAPKSYLRTRIYQDGVGEQVAELLSEFFVLWTKHIAFPELSVPIVVALKRW  634
            K LDF T ++ PKSYL+TR+YQDG+ EQV ELL E+  LW+K IAFPEL++P+++ LKR+
Sbjct  172  KPLDFETTLKVPKSYLKTRVYQDGLIEQVVELLLEYLALWSKSIAFPELALPVIIQLKRF  231

Query  635  LKQVGSRTTGNKNAKVNQAILLLVQKVEANARWIEEKRLNVTYTPRNRAEVESFLKDVDW  694
            +K+        KNAK N+ +  LV+K+E N+++IEEKR  V+++P+++AEVE+F +D+ W
Sbjct  232  IKKS-------KNAKFNKQLKQLVEKLEENSKFIEEKRSKVSFSPKDQAEVEAFEEDLKW  284

Query  695  ESTPLGAFVKTQ  706
            E TPLG +V +Q
Sbjct  285  EKTPLGKYVASQ  296



Lambda      K        H        a         alpha
   0.310    0.127    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1009875488


Query= TCONS_00002852

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428955 pfam06463, Mob_synth_C, Molybdenum Cofactor Synthesis ...  163     1e-49
CDD:427681 pfam04055, Radical_SAM, Radical SAM superfamily. Radic...  106     5e-28


>CDD:428955 pfam06463, Mob_synth_C, Molybdenum Cofactor Synthesis C.  This 
region contains two iron-sulphur (3Fe-4S) binding sites. Mutations 
in this region of human MOCS1 cause MOCOD (Molybdenum 
Co-Factor Deficiency) type A.
Length=127

 Score = 163 bits (415),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 56/162 (35%), Positives = 78/162 (48%), Gaps = 36/162 (22%)

Query  262  IEVRFIEYMPFD-GNKWSQGKMVSYQEMLAMIREKYPSLEKVVGHKNDTSKTYRIPGFQG  320
            I++RFIE MP   GN W + K VS  E+L  I  ++P L          +K YRIPG  G
Sbjct  1    IDLRFIELMPVGEGNGWRRKKFVSLDEILERIEARFP-LLPARKRTGGPAKRYRIPGGGG  59

Query  321  RVGFITSMTHNFCGTCNRLRITSDGNLKVCLFGNTEVSLRDIIRKENDGQPIDETTLKEL  380
            R+GFI  +++ FC +CNRLR+T+DG LK CLF    + LRD +R  +D +          
Sbjct  60   RIGFIAPVSNPFCASCNRLRLTADGKLKTCLFAEDGIDLRDALRSGDDDE----------  109

Query  381  QLLESAEAAARIQDQGGEVNQRERELLDLIGMAVKRKKAKHA  422
                                    EL + I  A+ RK  +H+
Sbjct  110  ------------------------ELREAIREALARKPPRHS  127


>CDD:427681 pfam04055, Radical_SAM, Radical SAM superfamily.  Radical SAM 
proteins catalyze diverse reactions, including unusual methylations, 
isomerisation, sulphur insertion, ring formation, 
anaerobic oxidation and protein radical formation.
Length=159

 Score = 106 bits (267),  Expect = 5e-28, Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 77/162 (48%), Gaps = 8/162 (5%)

Query  91   VTERCNLRCVYCMPEEGVPLSPPAHLLTTPEIVYLSSLFVSQGVTKIRLTGGEPTVRKDI  150
            +T  CNLRC YC              L+  EI+  +      GV  + L GGEP +  D+
Sbjct  1    ITRGCNLRCTYCAFPSI-RARGKGRELSPEEILEEAKELKRLGVEVVILGGGEPLLLPDL  59

Query  151  VPLMRSIGELRRNGLRELCLTTNGISLH-RKLEDMVEAGLTGVNLSLDTLDPFQFQIMTR  209
            V L+  + +L       + L TNG  L    LE + EAGL  V++ L++ D    +++ R
Sbjct  60   VELLERLLKLELAEGIRITLETNGTLLDEELLELLKEAGLDRVSIGLESGDDEVLKLINR  119

Query  210  RKGFEAVMKSIERILELNRAGAGI-TLKINCVVMRGINDREI  250
               FE V++++E + E     AGI  +  N V + G  D ++
Sbjct  120  GHTFEEVLEALELLRE-----AGIPVVTDNIVGLPGETDEDL  156



Lambda      K        H        a         alpha
   0.320    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00002853

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00002854

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         206     4e-62
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            67.1    1e-12


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 206 bits (527),  Expect = 4e-62, Method: Composition-based stats.
 Identities = 115/417 (28%), Positives = 206/417 (49%), Gaps = 14/417 (3%)

Query  20   GSKLGFFGAANAIGGVIPFIFLGWIGDKFGRRLPTALGSVIIIVGVLVEFFAT---SLDM  76
                G   +  ++G  I  +F G +GD+FGR+    + +V+ ++G +++  A    S+  
Sbjct  45   SVLSGLIVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQ  104

Query  77   YIGGKIVLGVGSSLIQMGAPVLVTELSHPKERVQITTFYNTSIVLGYVIGAWATFGCYRI  136
             I G++++G+G     + AP+ ++E++  K R  + + Y  +I  G ++      G  + 
Sbjct  105  LIVGRVLVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKT  164

Query  137  SSQWSWRLPTLIQIIPSAYQFCLIWFCPESPRWLIAKGRLQEARAILVKYHGECDPNSEL  196
            S+   WR+P  +Q++P+      + F PESPRWL+ KGRL+EAR +L K  G  D + EL
Sbjct  165  SNSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDREL  224

Query  197  VDFECAEIQQAIAKEAE-NNMTWKDFFSSVPNLKRIFLCFATAVFSQSSGNLLVSNYLTQ  255
                  EI+ ++    E    +WK+ FS+    +R+ +     +F Q +G   +  Y T 
Sbjct  225  D-----EIKDSLEAGQEAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTT  279

Query  256  ILKDTSLKTEFEITLVNGMVTLWQYIVAITVTLIIDRFKRRFFFLTGSGGVLVTFIVWTI  315
            I ++  L   F +T++ G+V      +AI    ++DRF RR   L G+ G+ + F++  I
Sbjct  280  IFENLGLSDSFLVTIIVGVVNFVFTFIAI---FLVDRFGRRPLLLLGAAGMAICFVILGI  336

Query  316  AAQRYLETGSLAAGRLVLACIFVFQAFYTLAWTNLIVTYPLEIVTYQMRAKTWAFVLLTI  375
             A   +   S  AG + +  I +F AF+ + W  +      E+    +R+K  A      
Sbjct  337  VALLGVS-KSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAAN  395

Query  376  QVSSIFGGYVNPIGLKNIGW-KFYIYYCVWVAIVFAVVYFFFVETAGPTLEELTYLF  431
             +++   G++ PI    IG    +  +   + +    V+FF  ET G TLEE+  LF
Sbjct  396  WLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 67.1 bits (164),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 62/366 (17%), Positives = 120/366 (33%), Gaps = 50/366 (14%)

Query  17   HPTGSKLGFFGAANAIGGVIPFIFLGWIGDKFGRRLPTALGSVIIIVGVLVEFFATSLDM  76
              + +++G      ++G  +     G + D+FGRR    +G ++  +G+L+  FA+SL +
Sbjct  28   GISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWL  87

Query  77   YIGGKIVLGVGSSLIQMGAPVLVTELSHPKERVQITTFYNTSIVLGYVIGAWATFGCYRI  136
             +  +++ G+G+  +   A  L+ +   P+ER +     +    LG  +G         +
Sbjct  88   LLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLG---GLL  144

Query  137  SSQWSWRLPTLIQIIPSAYQFCLIWFCPESPRWLIAKGRLQEARAILVKYHGECDPNSEL  196
            +S + WR   LI  I S     ++   P  P         +EAR  L+            
Sbjct  145  ASLFGWRAAFLILAILSLL-AAVLLLLPRPPPESKRPKPAEEARLSLIV-----------  192

Query  197  VDFECAEIQQAIAKEAENNMTWKDFFSSVPNLKRIFLCFATAVFSQSSGNLLVSNYLTQI  256
                                 WK             L    A+         +  YL   
Sbjct  193  --------------------AWKALLRDPV------LWLLLALLLFGFAFFGLLTYLPLY  226

Query  257  LKDTSLKTEFEITLVNGMVTLWQYIVAITVTLIIDRFKRRFFFLTGSGGVLVTFIVWTIA  316
             +   L +     L+ G+  L   I  + +  + DR  RR   L     +++  +   + 
Sbjct  227  QEVLGL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLL  285

Query  317  AQRYLETGSLAAGRLVLACIFVFQAFYTLAWTNLIVTYPLEIVTYQMRAKTWAFVLLTIQ  376
            +     T S     L L  +         A   L+     ++   + R            
Sbjct  286  SL----TLSSLWLLLALLLLGFGFGLVFPALNALVS----DLAPKEERGTASGLYNTAGS  337

Query  377  VSSIFG  382
            +    G
Sbjct  338  LGGALG  343



Lambda      K        H        a         alpha
   0.327    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00007995

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1      182     2e-55


>CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1.  
Length=453

 Score = 182 bits (463),  Expect = 2e-55, Method: Composition-based stats.
 Identities = 89/230 (39%), Positives = 117/230 (51%), Gaps = 19/230 (8%)

Query  1    MSHARAAALYNREFRSVQQGKIGISLNGDYYEPWNAEDERDHAAAERRMEFHIGWFANPV  60
            ++HARA  LY         G+IGI LN  +  P +   E D  AAER  +FH GWF +PV
Sbjct  198  LAHARAVKLYREH---GPDGQIGIVLNSSWAYPLSPSPEDD-EAAERADQFHNGWFLDPV  253

Query  61   FLARDYPACMREQLG--ARLPKFSPSDFALLREAESDFYGMNYYTSQFARHRDQPASETD  118
            F   DYP  M EQ      LP F+  D  L++   +DF G+NYYTS+  R+   P +   
Sbjct  254  FRG-DYPEEMMEQFRERGGLPNFTEEDKQLIK-GTADFLGLNYYTSRIVRNDPGPEAIPS  311

Query  119  YIGNVDELQENSKGTSVGEPSGIHWLRSCPDKFRKHLTRVYRLYGK-PIFITENGCPCPG  177
            Y      +  NS+       +   W+   P+  R  L R+ + YG  PI+ITENG     
Sbjct  312  Y---TTGIGMNSEVNPSWPSTDWGWIIY-PEGLRDLLNRLKKRYGNPPIYITENGAG---  364

Query  178  EDRMTCEES-VNDMYRIRYFEDHLEAVGLSVNQDGADIRGYFAWSLLDNL  226
              +   E   VND YRI Y   HL  V  ++  DG D+RGYFAWSL+DN 
Sbjct  365  -YKDEIENGTVNDDYRIDYLRQHLNQVLKAI-DDGVDVRGYFAWSLMDNF  412



Lambda      K        H        a         alpha
   0.320    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00002855

Length=451
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1      461     2e-161


>CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1.  
Length=453

 Score = 461 bits (1189),  Expect = 2e-161, Method: Composition-based stats.
 Identities = 204/440 (46%), Positives = 250/440 (57%), Gaps = 33/440 (8%)

Query  4    PAPLPPHFTWGFATAAYQIEGAVDEDGRGKSIWDTFCHLEPSRTKGANGDVACDHYHRYE  63
                P  F WG ATAAYQIEGA +EDG+G SIWDTFCH       G NGDVACD YHRY+
Sbjct  2    SDTFPEDFLWGTATAAYQIEGAWNEDGKGPSIWDTFCHTPGKVFGGDNGDVACDSYHRYK  61

Query  64   EDFDLLARYGAKEYRFSISWSRIIPLGGREDPVNEAGVAFYNKLIDSLLARGITPWVTLY  123
            ED  LL   G K YRFSISW RI P G  E  +NEAG+A+Y++LID LLA GI P VTLY
Sbjct  62   EDVALLKELGVKAYRFSISWPRIFPKG--EGEINEAGLAYYDRLIDELLAAGIEPMVTLY  119

Query  124  HWDLPQTLHDRYGGWLNVEESQRDFERYARVCYERFGDRVKNWITLNEPWIVSIFGYATG  183
            HWDLPQ L D +GGW N   +   F+RYA  C++RFGDRVK W+T NEPW  S  GY TG
Sbjct  120  HWDLPQALQD-HGGWEN-RSTIDAFKRYAETCFKRFGDRVKYWLTFNEPWCASWLGYGTG  177

Query  184  GNAPGRSSINPQATEGDTATEPWIVGKALIMSHARAAALYNREFRSVQQGKIGISLNGDY  243
             +APG           D    P+     ++++HARA  LY         G+IGI LN  +
Sbjct  178  EHAPG----------KDDGEAPYQAAHHILLAHARAVKLYREH---GPDGQIGIVLNSSW  224

Query  244  YEPWNAEDERDHAAAERRMEFHIGWFANPVFLARDYPACMREQLG--ARLPKFSPSDFAL  301
              P +   E D  AAER  +FH GWF +PVF   DYP  M EQ      LP F+  D  L
Sbjct  225  AYPLSPSPEDD-EAAERADQFHNGWFLDPVFRG-DYPEEMMEQFRERGGLPNFTEEDKQL  282

Query  302  LREAESDFYGMNYYTSQFARHRDQPASETDYIGNVDELQENSKGTSVGEPSGIHWLRSCP  361
            ++   +DF G+NYYTS+  R+   P +   Y      +  NS+       +   W+   P
Sbjct  283  IK-GTADFLGLNYYTSRIVRNDPGPEAIPSY---TTGIGMNSEVNPSWPSTDWGWIIY-P  337

Query  362  DKFRKHLTRVYRLYGK-PIFITENGCPCPGEDRMTCEES-VNDMYRIRYFEDHLEAVGLS  419
            +  R  L R+ + YG  PI+ITENG       +   E   VND YRI Y   HL  V  +
Sbjct  338  EGLRDLLNRLKKRYGNPPIYITENGAG----YKDEIENGTVNDDYRIDYLRQHLNQVLKA  393

Query  420  VNQDGADIRGYFAWSLLDNL  439
            +  DG D+RGYFAWSL+DN 
Sbjct  394  I-DDGVDVRGYFAWSLMDNF  412



Lambda      K        H        a         alpha
   0.320    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 553667144


Query= TCONS_00002857

Length=497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1      499     1e-175


>CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1.  
Length=453

 Score = 499 bits (1287),  Expect = 1e-175, Method: Composition-based stats.
 Identities = 221/477 (46%), Positives = 273/477 (57%), Gaps = 34/477 (7%)

Query  4    PAPLPPHFTWGFATAAYQIEGAVDEDGRGKSIWDTFCHLEPSRTKGANGDVACDHYHRYE  63
                P  F WG ATAAYQIEGA +EDG+G SIWDTFCH       G NGDVACD YHRY+
Sbjct  2    SDTFPEDFLWGTATAAYQIEGAWNEDGKGPSIWDTFCHTPGKVFGGDNGDVACDSYHRYK  61

Query  64   EDFDLLARYGAKEYRFSISWSRIIPLGGREDPVNEAGVAFYNKLIDSLLARGITPWVTLY  123
            ED  LL   G K YRFSISW RI P G  E  +NEAG+A+Y++LID LLA GI P VTLY
Sbjct  62   EDVALLKELGVKAYRFSISWPRIFPKG--EGEINEAGLAYYDRLIDELLAAGIEPMVTLY  119

Query  124  HWDLPQTLHDRYGGWLNVEESQRDFERYARVCYERFGDRVKNWITLNEPWIVSIFGYATG  183
            HWDLPQ L D +GGW N   +   F+RYA  C++RFGDRVK W+T NEPW  S  GY TG
Sbjct  120  HWDLPQALQD-HGGWEN-RSTIDAFKRYAETCFKRFGDRVKYWLTFNEPWCASWLGYGTG  177

Query  184  GNAPGRSSINPQATEGDTATEPWIVGKALIMSHARAAALYNREFRSVQQGKIGISLNGDY  243
             +APG           D    P+     ++++HARA  LY         G+IGI LN  +
Sbjct  178  EHAPG----------KDDGEAPYQAAHHILLAHARAVKLYREH---GPDGQIGIVLNSSW  224

Query  244  YEPWNAEDERDHAAAERRMEFHIGWFANPVFLARDYPACMREQLG--ARLPKFSPSDFAL  301
              P +   E D  AAER  +FH GWF +PVF   DYP  M EQ      LP F+  D  L
Sbjct  225  AYPLSPSPEDD-EAAERADQFHNGWFLDPVFRG-DYPEEMMEQFRERGGLPNFTEEDKQL  282

Query  302  LREAESDFYGMNYYTSQFARHRDQPASETDYIGNVDELQENSKGTSVGEPSGIHWLRSCP  361
            ++   +DF G+NYYTS+  R+   P +   Y      +  NS+       +   W+   P
Sbjct  283  IK-GTADFLGLNYYTSRIVRNDPGPEAIPSY---TTGIGMNSEVNPSWPSTDWGWIIY-P  337

Query  362  DKFRKHLTRVYRLYGK-PIFITENGCPCPGEDRMTCEES-VNDMYRIRYFEDHLEAVGLS  419
            +  R  L R+ + YG  PI+ITENG       +   E   VND YRI Y   HL  V  +
Sbjct  338  EGLRDLLNRLKKRYGNPPIYITENGAG----YKDEIENGTVNDDYRIDYLRQHLNQVLKA  393

Query  420  VNQDGADIRGYFAWSLLDNLEWSDGYGPRFGVTFTDYQ-TLKRTPKKSALLLRRIFE  475
            +  DG D+RGYFAWSL+DN EW++GY  RFG+   D   T +RTPKKSA   + + E
Sbjct  394  I-DDGVDVRGYFAWSLMDNFEWANGYSKRFGLVHVDRFETQERTPKKSAYWYKEVIE  449



Lambda      K        H        a         alpha
   0.320    0.138    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 614710796


Query= TCONS_00002858

Length=95
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1      91.6    6e-24


>CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1.  
Length=453

 Score = 91.6 bits (228),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 48/82 (59%), Gaps = 8/82 (10%)

Query  2    YRIRYFEDHLEAVGLSVNQDGADIRGYFAWSLLDNLEWSDGYGPRFGVTFTDYQ-TLKRT  60
            YRI Y   HL  V  ++  DG D+RGYFAWSL+DN EW++GY  RFG+   D   T +RT
Sbjct  378  YRIDYLRQHLNQVLKAI-DDGVDVRGYFAWSLMDNFEWANGYSKRFGLVHVDRFETQERT  436

Query  61   PKKSALLLRRIFEERIGISTKG  82
            PKKSA   + +      I   G
Sbjct  437  PKKSAYWYKEV------IENNG  452



Lambda      K        H        a         alpha
   0.322    0.140    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00002859

Length=453


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00002860

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00002861

Length=523


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 654076512


Query= TCONS_00007996

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.114    0.305    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00002863

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00002864

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00002865

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00002862

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00002866

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00002867

Length=651


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 822932820


Query= TCONS_00002868

Length=350


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00002869

Length=1081
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404562 pfam13691, Lactamase_B_4, tRNase Z endonuclease. This ...  116     1e-31


>CDD:404562 pfam13691, Lactamase_B_4, tRNase Z endonuclease.  This is family 
of tRNase Z enzymes, that are closely related structurally 
to the Lactamase_B family members. tRNase Z is the endonuclease 
that is involved in tRNA 3'-end maturation through removal 
of the 3'-trailer sequences from tRNA precursors. The 
fission yeast Schizosaccharomyces pombe contains two candidate 
tRNase Zs encoded by two essential genes. The first, trz1, 
is targeted to the nucleus and has an SV40 nuclear localization 
signal at its N-terminus, consisting of four consecutive 
arginine and lysine residues between residues 208 and 211 
(KKRK) that is critical for the NLS function. The second, trz2, 
is targeted to the mitochondria, with an N-terminal mitochondrial 
targeting signal within the first 38 residues.
Length=63

 Score = 116 bits (292),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 40/63 (63%), Positives = 48/63 (76%), Gaps = 0/63 (0%)

Query  6   QVLTTPTADTPGTTVVLHFPEKRYFFGQISEGTQRACTERGVKLSYLTDIFLTGRTEWAN  65
           QV+TTPTADTPG  ++LHF  KRY FG + EGTQRA  E+ V+LS L DIFLTG+  W+N
Sbjct  1   QVVTTPTADTPGPLLLLHFDSKRYLFGNVGEGTQRALNEQKVRLSKLEDIFLTGKVSWSN  60

Query  66  NGG  68
            GG
Sbjct  61  IGG  63



Lambda      K        H        a         alpha
   0.315    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1394637860


Query= TCONS_00007997

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved re...  294     1e-100


>CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region.  
GTR1 was first identified in S. cerevisiae as a suppressor of 
a mutation in RCC1. Biochemical analysis revealed that Gtr1 
is in fact a G protein of the Ras family. The RagA/B proteins 
are the human homologs of Gtr1. Included in this family 
is the human Rag C, a novel protein that has been shown to interact 
with RagA/B.
Length=231

 Score = 294 bits (756),  Expect = 1e-100, Method: Composition-based stats.
 Identities = 88/232 (38%), Positives = 141/232 (61%), Gaps = 8/232 (3%)

Query  27   RLLLMGLRRCGKSSIASVVFHKMPPNETLFLESTTRIQKDSIH--SFMDFQVWDFPGQLE  84
            ++LLMGL   GKSS+ SV+F    P +TL L +T  ++   +     +   +WD  GQ +
Sbjct  1    KVLLMGLSGSGKSSMRSVIFSNYSPRDTLRLGATIDVEHSHVRFLGNLVLNLWDCGGQDD  60

Query  85   YLEP--SFDLEAIFGSLGALVWVIDAQ-DDYLDSVARLNRTILTVQQYYPNINIEVFIHK  141
            + +   +F  E IF ++G L++V D Q  +Y + +ARL  TI  + QY P+  + V IHK
Sbjct  61   FFDNYLTFQKEHIFSNVGVLIYVFDVQSREYEEDLARLKETIEALYQYSPDAKVFVLIHK  120

Query  142  VDGLSDEYRTDTFQDIVQRISDELSDAGYENAPVHYYLTSIYDYSVFEAFSKVIQKLIPN  201
            +D + +++R + F+D  Q I +E  D G E   + ++LTSI+D S+++A+S ++QKLIPN
Sbjct  121  MDLIQEDHREEIFRDRKQEIREESEDLGLE-LDLSFFLTSIWDESLYKAWSSIVQKLIPN  179

Query  202  LSTLENLINTLANNCGFEKTYLFDVLSKIYIASDTRP--VDMSCYEMCSDYI  251
            L TLENL+    +N   ++ +LF+  + + IA+D+R    DM  YE CSD I
Sbjct  180  LPTLENLLKVFCSNSDADEVFLFERTTFLVIATDSRSPVDDMQRYEKCSDII  231



Lambda      K        H        a         alpha
   0.319    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00002876

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved re...  225     4e-74


>CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region.  
GTR1 was first identified in S. cerevisiae as a suppressor of 
a mutation in RCC1. Biochemical analysis revealed that Gtr1 
is in fact a G protein of the Ras family. The RagA/B proteins 
are the human homologs of Gtr1. Included in this family 
is the human Rag C, a novel protein that has been shown to interact 
with RagA/B.
Length=231

 Score = 225 bits (575),  Expect = 4e-74, Method: Composition-based stats.
 Identities = 71/185 (38%), Positives = 115/185 (62%), Gaps = 6/185 (3%)

Query  1    MDFQVWDFPGQLEYLEP--SFDLEAIFGSLGALVWVIDAQ-DDYLDSVARLNRTILTVQQ  57
            +   +WD  GQ ++ +   +F  E IF ++G L++V D Q  +Y + +ARL  TI  + Q
Sbjct  48   LVLNLWDCGGQDDFFDNYLTFQKEHIFSNVGVLIYVFDVQSREYEEDLARLKETIEALYQ  107

Query  58   YYPNINIEVFIHKVDGLSDEYRTDTFQDIVQRISDELSDAGYENAPVHYYLTSIYDYSVF  117
            Y P+  + V IHK+D + +++R + F+D  Q I +E  D G E   + ++LTSI+D S++
Sbjct  108  YSPDAKVFVLIHKMDLIQEDHREEIFRDRKQEIREESEDLGLE-LDLSFFLTSIWDESLY  166

Query  118  EAFSKVIQKLIPNLSTLENLINTLANNCGFEKTYLFDVLSKIYIASDTRP--VDMSCYEM  175
            +A+S ++QKLIPNL TLENL+    +N   ++ +LF+  + + IA+D+R    DM  YE 
Sbjct  167  KAWSSIVQKLIPNLPTLENLLKVFCSNSDADEVFLFERTTFLVIATDSRSPVDDMQRYEK  226

Query  176  CSDYI  180
            CSD I
Sbjct  227  CSDII  231



Lambda      K        H        a         alpha
   0.319    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0721    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00007998

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00007999

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved re...  297     9e-102


>CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region.  
GTR1 was first identified in S. cerevisiae as a suppressor of 
a mutation in RCC1. Biochemical analysis revealed that Gtr1 
is in fact a G protein of the Ras family. The RagA/B proteins 
are the human homologs of Gtr1. Included in this family 
is the human Rag C, a novel protein that has been shown to interact 
with RagA/B.
Length=231

 Score = 297 bits (764),  Expect = 9e-102, Method: Composition-based stats.
 Identities = 89/232 (38%), Positives = 142/232 (61%), Gaps = 8/232 (3%)

Query  27   RLLLMGLRRSGKSSIASVVFHKMPPNETLFLESTTRIQKDSIH--SFMDFQVWDFPGQLE  84
            ++LLMGL  SGKSS+ SV+F    P +TL L +T  ++   +     +   +WD  GQ +
Sbjct  1    KVLLMGLSGSGKSSMRSVIFSNYSPRDTLRLGATIDVEHSHVRFLGNLVLNLWDCGGQDD  60

Query  85   YLEP--SFDLEAIFGSLGALVWVIDAQ-DDYLDSVARLNRTILTVQQYYPNINIEVFIHK  141
            + +   +F  E IF ++G L++V D Q  +Y + +ARL  TI  + QY P+  + V IHK
Sbjct  61   FFDNYLTFQKEHIFSNVGVLIYVFDVQSREYEEDLARLKETIEALYQYSPDAKVFVLIHK  120

Query  142  VDGLSDEYRTDTFQDIVQRISDELSDAGYENAPVHYYLTSIYDYSVFEAFSKVIQKLIPN  201
            +D + +++R + F+D  Q I +E  D G E   + ++LTSI+D S+++A+S ++QKLIPN
Sbjct  121  MDLIQEDHREEIFRDRKQEIREESEDLGLE-LDLSFFLTSIWDESLYKAWSSIVQKLIPN  179

Query  202  LSTLENLINTLANNCGFEKTYLFDVLSKIYIASDTRP--VDMSCYEMCSDYI  251
            L TLENL+    +N   ++ +LF+  + + IA+D+R    DM  YE CSD I
Sbjct  180  LPTLENLLKVFCSNSDADEVFLFERTTFLVIATDSRSPVDDMQRYEKCSDII  231



Lambda      K        H        a         alpha
   0.318    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00008000

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  111     4e-30
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  82.5    5e-19


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 111 bits (279),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 65/173 (38%), Positives = 86/173 (50%), Gaps = 12/173 (7%)

Query  51   WALVTGASDGIGFGFAQELCKRGFNVFLHGRNHDKLLRKRDELLAEFPNRKIRIIVFDAF  110
             ALVTGAS GIG   A+ L K G  V L  R+ +KL     EL A     K   I  D  
Sbjct  2    VALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGAL--GGKALFIQGDVT  59

Query  111  KSSED---LRWIAQEIGDARLTVLVNNAGGE-VKLFERLADLIHEDVQATISLNSTFTAQ  166
              ++    +    + +G  RL +LVNNAG   +  F  L+D   ED +  I +N T    
Sbjct  60   DRAQVKALVEQAVERLG--RLDILVNNAGITGLGPFSELSD---EDWERVIDVNLTGVFN  114

Query  167  ITRVLLPVLERNSPSLILAVSSAAAYV-MPTLTVYSASKGFVESFTRSLQAEM  218
            +TR +LP + + S   I+ +SS A  V  P  + YSASK  V  FTRSL  E+
Sbjct  115  LTRAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALEL  167


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 82.5 bits (205),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 53/183 (29%), Positives = 81/183 (44%), Gaps = 18/183 (10%)

Query  60   GIGFGFAQELCKRGFNVFLHGRNHDKLLRKRDELLAEFPNRKIRIIVFDAFKSSEDLRWI  119
            GIG+  A+ L + G  V L   N + L ++ +EL  E       ++  D     E +  +
Sbjct  7    GIGWAIARALAEEGAEVVLTDLN-EALAKRVEELAEELGAA---VLPCDV-TDEEQVEAL  61

Query  120  AQEIGDA--RLTVLVNNAGGEVKLFERLADLIHEDVQATISLNSTFTAQITRVLLPVLER  177
                 +   RL +LVNNAG   KL     D   ED    + +N      + +  LP+++ 
Sbjct  62   VAAAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLMKE  121

Query  178  NSPSLILAVSSAAAY-VMPTLTVYSASKGFVESFTRSLQAEMTLDGKDVEVLGLRVGNTK  236
               S I+ +SS  A  V+P    Y A+K  +E+ TR L  E+   G      G+RV N  
Sbjct  122  GG-S-IVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVEL---GPR----GIRV-NAI  171

Query  237  SQG  239
            S G
Sbjct  172  SPG  174



Lambda      K        H        a         alpha
   0.321    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00002871

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved re...  251     3e-84


>CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region.  
GTR1 was first identified in S. cerevisiae as a suppressor of 
a mutation in RCC1. Biochemical analysis revealed that Gtr1 
is in fact a G protein of the Ras family. The RagA/B proteins 
are the human homologs of Gtr1. Included in this family 
is the human Rag C, a novel protein that has been shown to interact 
with RagA/B.
Length=231

 Score = 251 bits (644),  Expect = 3e-84, Method: Composition-based stats.
 Identities = 76/210 (36%), Positives = 125/210 (60%), Gaps = 8/210 (4%)

Query  1    MPPNETLFLESTTRIQKDSIH--SFMDFQVWDFPGQLEYLEP--SFDLEAIFGSLGALVW  56
              P +TL L +T  ++   +     +   +WD  GQ ++ +   +F  E IF ++G L++
Sbjct  23   YSPRDTLRLGATIDVEHSHVRFLGNLVLNLWDCGGQDDFFDNYLTFQKEHIFSNVGVLIY  82

Query  57   VIDAQ-DDYLDSVARLNRTILTVQQYYPNINIEVFIHKVDGLSDEYRTDTFQDIVQRISD  115
            V D Q  +Y + +ARL  TI  + QY P+  + V IHK+D + +++R + F+D  Q I +
Sbjct  83   VFDVQSREYEEDLARLKETIEALYQYSPDAKVFVLIHKMDLIQEDHREEIFRDRKQEIRE  142

Query  116  ELSDAGYENAPVHYYLTSIYDYSVFEAFSKVIQKLIPNLSTLENLINTLANNCGFEKTYL  175
            E  D G E   + ++LTSI+D S+++A+S ++QKLIPNL TLENL+    +N   ++ +L
Sbjct  143  ESEDLGLE-LDLSFFLTSIWDESLYKAWSSIVQKLIPNLPTLENLLKVFCSNSDADEVFL  201

Query  176  FDVLSKIYIASDTRP--VDMSCYEMCSDYI  203
            F+  + + IA+D+R    DM  YE CSD I
Sbjct  202  FERTTFLVIATDSRSPVDDMQRYEKCSDII  231



Lambda      K        H        a         alpha
   0.319    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00002872

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  111     1e-30
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  82.5    4e-19


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 111 bits (281),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 65/173 (38%), Positives = 86/173 (50%), Gaps = 12/173 (7%)

Query  51   WALVTGASDGIGFGFAQELCKRGFNVFLHGRNHDKLLRKRDELLAEFPNRKIRIIVFDAF  110
             ALVTGAS GIG   A+ L K G  V L  R+ +KL     EL A     K   I  D  
Sbjct  2    VALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGAL--GGKALFIQGDVT  59

Query  111  KSSED---LRWIAQEIGDARLTVLVNNAGGE-VKLFERLADLIHEDVQATISLNSTFTAQ  166
              ++    +    + +G  RL +LVNNAG   +  F  L+D   ED +  I +N T    
Sbjct  60   DRAQVKALVEQAVERLG--RLDILVNNAGITGLGPFSELSD---EDWERVIDVNLTGVFN  114

Query  167  ITRVLLPVLERNSPSLILAVSSAAAYV-MPTLTVYSASKGFVESFTRSLQAEM  218
            +TR +LP + + S   I+ +SS A  V  P  + YSASK  V  FTRSL  E+
Sbjct  115  LTRAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALEL  167


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 82.5 bits (205),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 53/183 (29%), Positives = 81/183 (44%), Gaps = 18/183 (10%)

Query  60   GIGFGFAQELCKRGFNVFLHGRNHDKLLRKRDELLAEFPNRKIRIIVFDAFKSSEDLRWI  119
            GIG+  A+ L + G  V L   N + L ++ +EL  E       ++  D     E +  +
Sbjct  7    GIGWAIARALAEEGAEVVLTDLN-EALAKRVEELAEELGAA---VLPCDV-TDEEQVEAL  61

Query  120  AQEIGDA--RLTVLVNNAGGEVKLFERLADLIHEDVQATISLNSTFTAQITRVLLPVLER  177
                 +   RL +LVNNAG   KL     D   ED    + +N      + +  LP+++ 
Sbjct  62   VAAAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLMKE  121

Query  178  NSPSLILAVSSAAAY-VMPTLTVYSASKGFVESFTRSLQAEMTLDGKDVEVLGLRVGNTK  236
               S I+ +SS  A  V+P    Y A+K  +E+ TR L  E+   G      G+RV N  
Sbjct  122  GG-S-IVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVEL---GPR----GIRV-NAI  171

Query  237  SQG  239
            S G
Sbjct  172  SPG  174



Lambda      K        H        a         alpha
   0.321    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00002873

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved re...  297     9e-102


>CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region.  
GTR1 was first identified in S. cerevisiae as a suppressor of 
a mutation in RCC1. Biochemical analysis revealed that Gtr1 
is in fact a G protein of the Ras family. The RagA/B proteins 
are the human homologs of Gtr1. Included in this family 
is the human Rag C, a novel protein that has been shown to interact 
with RagA/B.
Length=231

 Score = 297 bits (764),  Expect = 9e-102, Method: Composition-based stats.
 Identities = 89/232 (38%), Positives = 142/232 (61%), Gaps = 8/232 (3%)

Query  27   RLLLMGLRRSGKSSIASVVFHKMPPNETLFLESTTRIQKDSIH--SFMDFQVWDFPGQLE  84
            ++LLMGL  SGKSS+ SV+F    P +TL L +T  ++   +     +   +WD  GQ +
Sbjct  1    KVLLMGLSGSGKSSMRSVIFSNYSPRDTLRLGATIDVEHSHVRFLGNLVLNLWDCGGQDD  60

Query  85   YLEP--SFDLEAIFGSLGALVWVIDAQ-DDYLDSVARLNRTILTVQQYYPNINIEVFIHK  141
            + +   +F  E IF ++G L++V D Q  +Y + +ARL  TI  + QY P+  + V IHK
Sbjct  61   FFDNYLTFQKEHIFSNVGVLIYVFDVQSREYEEDLARLKETIEALYQYSPDAKVFVLIHK  120

Query  142  VDGLSDEYRTDTFQDIVQRISDELSDAGYENAPVHYYLTSIYDYSVFEAFSKVIQKLIPN  201
            +D + +++R + F+D  Q I +E  D G E   + ++LTSI+D S+++A+S ++QKLIPN
Sbjct  121  MDLIQEDHREEIFRDRKQEIREESEDLGLE-LDLSFFLTSIWDESLYKAWSSIVQKLIPN  179

Query  202  LSTLENLINTLANNCGFEKTYLFDVLSKIYIASDTRP--VDMSCYEMCSDYI  251
            L TLENL+    +N   ++ +LF+  + + IA+D+R    DM  YE CSD I
Sbjct  180  LPTLENLLKVFCSNSDADEVFLFERTTFLVIATDSRSPVDDMQRYEKCSDII  231



Lambda      K        H        a         alpha
   0.318    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00002874

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved re...  296     4e-101


>CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region.  
GTR1 was first identified in S. cerevisiae as a suppressor of 
a mutation in RCC1. Biochemical analysis revealed that Gtr1 
is in fact a G protein of the Ras family. The RagA/B proteins 
are the human homologs of Gtr1. Included in this family 
is the human Rag C, a novel protein that has been shown to interact 
with RagA/B.
Length=231

 Score = 296 bits (760),  Expect = 4e-101, Method: Composition-based stats.
 Identities = 89/232 (38%), Positives = 143/232 (62%), Gaps = 8/232 (3%)

Query  27   RLLLMGLRRSGKSSIASVVFHKMPPNETLFLESTTRIQKDSIQ--SFMDFQVWDFPGQLE  84
            ++LLMGL  SGKSS+ SV+F    P +TL L +T  ++   ++    +   +WD  GQ +
Sbjct  1    KVLLMGLSGSGKSSMRSVIFSNYSPRDTLRLGATIDVEHSHVRFLGNLVLNLWDCGGQDD  60

Query  85   YLEP--SFDLEAIFGSLGALVWVIDAQ-DDYLDSVARLNRTILTVQQYYPNINIEVFIHK  141
            + +   +F  E IF ++G L++V D Q  +Y + +ARL  TI  + QY P+  + V IHK
Sbjct  61   FFDNYLTFQKEHIFSNVGVLIYVFDVQSREYEEDLARLKETIEALYQYSPDAKVFVLIHK  120

Query  142  VDGLSDEYRTDTFQDIVQRISDELSDAGYENAPVHYYLTSIYDYSVFEAFSKVIQKLIPN  201
            +D + +++R + F+D  Q I +E  D G E   + ++LTSI+D S+++A+S ++QKLIPN
Sbjct  121  MDLIQEDHREEIFRDRKQEIREESEDLGLE-LDLSFFLTSIWDESLYKAWSSIVQKLIPN  179

Query  202  LSTLENLINTLANNCGFEKTYLFDVLSKIYIASDTRP--VDMSCYEMCSDYI  251
            L TLENL+    +N   ++ +LF+  + + IA+D+R    DM  YE CSD I
Sbjct  180  LPTLENLLKVFCSNSDADEVFLFERTTFLVIATDSRSPVDDMQRYEKCSDII  231



Lambda      K        H        a         alpha
   0.318    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00008002

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved re...  294     1e-100


>CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region.  
GTR1 was first identified in S. cerevisiae as a suppressor of 
a mutation in RCC1. Biochemical analysis revealed that Gtr1 
is in fact a G protein of the Ras family. The RagA/B proteins 
are the human homologs of Gtr1. Included in this family 
is the human Rag C, a novel protein that has been shown to interact 
with RagA/B.
Length=231

 Score = 294 bits (756),  Expect = 1e-100, Method: Composition-based stats.
 Identities = 88/232 (38%), Positives = 141/232 (61%), Gaps = 8/232 (3%)

Query  27   RLLLMGLRRCGKSSIASVVFHKMPPNETLFLESTTRIQKDSIH--SFMDFQVWDFPGQLE  84
            ++LLMGL   GKSS+ SV+F    P +TL L +T  ++   +     +   +WD  GQ +
Sbjct  1    KVLLMGLSGSGKSSMRSVIFSNYSPRDTLRLGATIDVEHSHVRFLGNLVLNLWDCGGQDD  60

Query  85   YLEP--SFDLEAIFGSLGALVWVIDAQ-DDYLDSVARLNRTILTVQQYYPNINIEVFIHK  141
            + +   +F  E IF ++G L++V D Q  +Y + +ARL  TI  + QY P+  + V IHK
Sbjct  61   FFDNYLTFQKEHIFSNVGVLIYVFDVQSREYEEDLARLKETIEALYQYSPDAKVFVLIHK  120

Query  142  VDGLSDEYRTDTFQDIVQRISDELSDAGYENAPVHYYLTSIYDYSVFEAFSKVIQKLIPN  201
            +D + +++R + F+D  Q I +E  D G E   + ++LTSI+D S+++A+S ++QKLIPN
Sbjct  121  MDLIQEDHREEIFRDRKQEIREESEDLGLE-LDLSFFLTSIWDESLYKAWSSIVQKLIPN  179

Query  202  LSTLENLINTLANNCGFEKTYLFDVLSKIYIASDTRP--VDMSCYEMCSDYI  251
            L TLENL+    +N   ++ +LF+  + + IA+D+R    DM  YE CSD I
Sbjct  180  LPTLENLLKVFCSNSDADEVFLFERTTFLVIATDSRSPVDDMQRYEKCSDII  231



Lambda      K        H        a         alpha
   0.319    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00008001

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved re...  250     2e-83


>CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region.  
GTR1 was first identified in S. cerevisiae as a suppressor of 
a mutation in RCC1. Biochemical analysis revealed that Gtr1 
is in fact a G protein of the Ras family. The RagA/B proteins 
are the human homologs of Gtr1. Included in this family 
is the human Rag C, a novel protein that has been shown to interact 
with RagA/B.
Length=231

 Score = 250 bits (640),  Expect = 2e-83, Method: Composition-based stats.
 Identities = 81/232 (35%), Positives = 126/232 (54%), Gaps = 37/232 (16%)

Query  27   RLLLMGLRRSGKSSIASVVFHKMPPNETLFLESTTRIQKDSIHL----------------  70
            ++LLMGL  SGKSS+ SV+F    P +TL L +T  ++   +                  
Sbjct  1    KVLLMGLSGSGKSSMRSVIFSNYSPRDTLRLGATIDVEHSHVRFLGNLVLNLWDCGGQDD  60

Query  71   -----------------GALVWVIDAQ-DDYLDSVARLNRTILTVQQYYPNINIEVFIHK  112
                             G L++V D Q  +Y + +ARL  TI  + QY P+  + V IHK
Sbjct  61   FFDNYLTFQKEHIFSNVGVLIYVFDVQSREYEEDLARLKETIEALYQYSPDAKVFVLIHK  120

Query  113  VDGLSDEYRTDTFQDIVQRISDELSDAGYENAPVHYYLTSIYDYSVFEAFSKVIQKLIPN  172
            +D + +++R + F+D  Q I +E  D G E   + ++LTSI+D S+++A+S ++QKLIPN
Sbjct  121  MDLIQEDHREEIFRDRKQEIREESEDLGLE-LDLSFFLTSIWDESLYKAWSSIVQKLIPN  179

Query  173  LSTLENLINTLANNCGFEKTYLFDVLSKIYIASDTRP--VDMSCYEMCSDYI  222
            L TLENL+    +N   ++ +LF+  + + IA+D+R    DM  YE CSD I
Sbjct  180  LPTLENLLKVFCSNSDADEVFLFERTTFLVIATDSRSPVDDMQRYEKCSDII  231



Lambda      K        H        a         alpha
   0.318    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00002878

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved re...  298     5e-102


>CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region.  
GTR1 was first identified in S. cerevisiae as a suppressor of 
a mutation in RCC1. Biochemical analysis revealed that Gtr1 
is in fact a G protein of the Ras family. The RagA/B proteins 
are the human homologs of Gtr1. Included in this family 
is the human Rag C, a novel protein that has been shown to interact 
with RagA/B.
Length=231

 Score = 298 bits (766),  Expect = 5e-102, Method: Composition-based stats.
 Identities = 89/232 (38%), Positives = 142/232 (61%), Gaps = 8/232 (3%)

Query  27   RLLLMGLRRSGKSSIASVVFHKMPPNETLFLESTTRIQKDSIH--SFMDFQVWDFPGQLE  84
            ++LLMGL  SGKSS+ SV+F    P +TL L +T  ++   +     +   +WD  GQ +
Sbjct  1    KVLLMGLSGSGKSSMRSVIFSNYSPRDTLRLGATIDVEHSHVRFLGNLVLNLWDCGGQDD  60

Query  85   YLEP--SFDLEAIFGSLGALVWVIDAQ-DDYLDSVARLNRTILTVQQYYPNINIEVFIHK  141
            + +   +F  E IF ++G L++V D Q  +Y + +ARL  TI  + QY P+  + V IHK
Sbjct  61   FFDNYLTFQKEHIFSNVGVLIYVFDVQSREYEEDLARLKETIEALYQYSPDAKVFVLIHK  120

Query  142  VDGLSDEYRTDTFQDIVQRISDELSDAGYENAPVHYYLTSIYDYSVFEAFSKVIQKLIPN  201
            +D + +++R + F+D  Q I +E  D G E   + ++LTSI+D S+++A+S ++QKLIPN
Sbjct  121  MDLIQEDHREEIFRDRKQEIREESEDLGLE-LDLSFFLTSIWDESLYKAWSSIVQKLIPN  179

Query  202  LSTLENLINTLANNCGFEKTYLFDVLSKIYIASDTRP--VDMSCYEMCSDYI  251
            L TLENL+    +N   ++ +LF+  + + IA+D+R    DM  YE CSD I
Sbjct  180  LPTLENLLKVFCSNSDADEVFLFERTTFLVIATDSRSPVDDMQRYEKCSDII  231



Lambda      K        H        a         alpha
   0.319    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00002877

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved re...  251     3e-84


>CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region.  
GTR1 was first identified in S. cerevisiae as a suppressor of 
a mutation in RCC1. Biochemical analysis revealed that Gtr1 
is in fact a G protein of the Ras family. The RagA/B proteins 
are the human homologs of Gtr1. Included in this family 
is the human Rag C, a novel protein that has been shown to interact 
with RagA/B.
Length=231

 Score = 251 bits (644),  Expect = 3e-84, Method: Composition-based stats.
 Identities = 76/210 (36%), Positives = 125/210 (60%), Gaps = 8/210 (4%)

Query  1    MPPNETLFLESTTRIQKDSIH--SFMDFQVWDFPGQLEYLEP--SFDLEAIFGSLGALVW  56
              P +TL L +T  ++   +     +   +WD  GQ ++ +   +F  E IF ++G L++
Sbjct  23   YSPRDTLRLGATIDVEHSHVRFLGNLVLNLWDCGGQDDFFDNYLTFQKEHIFSNVGVLIY  82

Query  57   VIDAQ-DDYLDSVARLNRTILTVQQYYPNINIEVFIHKVDGLSDEYRTDTFQDIVQRISD  115
            V D Q  +Y + +ARL  TI  + QY P+  + V IHK+D + +++R + F+D  Q I +
Sbjct  83   VFDVQSREYEEDLARLKETIEALYQYSPDAKVFVLIHKMDLIQEDHREEIFRDRKQEIRE  142

Query  116  ELSDAGYENAPVHYYLTSIYDYSVFEAFSKVIQKLIPNLSTLENLINTLANNCGFEKTYL  175
            E  D G E   + ++LTSI+D S+++A+S ++QKLIPNL TLENL+    +N   ++ +L
Sbjct  143  ESEDLGLE-LDLSFFLTSIWDESLYKAWSSIVQKLIPNLPTLENLLKVFCSNSDADEVFL  201

Query  176  FDVLSKIYIASDTRP--VDMSCYEMCSDYI  203
            F+  + + IA+D+R    DM  YE CSD I
Sbjct  202  FERTTFLVIATDSRSPVDDMQRYEKCSDII  231



Lambda      K        H        a         alpha
   0.319    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00002879

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved re...  295     8e-102


>CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region.  
GTR1 was first identified in S. cerevisiae as a suppressor of 
a mutation in RCC1. Biochemical analysis revealed that Gtr1 
is in fact a G protein of the Ras family. The RagA/B proteins 
are the human homologs of Gtr1. Included in this family 
is the human Rag C, a novel protein that has been shown to interact 
with RagA/B.
Length=231

 Score = 295 bits (758),  Expect = 8e-102, Method: Composition-based stats.
 Identities = 89/232 (38%), Positives = 142/232 (61%), Gaps = 8/232 (3%)

Query  27   RLLLMGLRRSGKSSIASVVFHKMPPNETLFLESTTRIQKDSIH--SFMDFQVWDFPGQLE  84
            ++LLMGL  SGKSS+ SV+F    P +TL L +T  ++   +     +   +WD  GQ +
Sbjct  1    KVLLMGLSGSGKSSMRSVIFSNYSPRDTLRLGATIDVEHSHVRFLGNLVLNLWDCGGQDD  60

Query  85   YLEP--SFDLEAIFGSLGALVWVIDAQ-DDYLDSVARLNRTILTVQQYYPNINIEVFIHK  141
            + +   +F  E IF ++G L++V D Q  +Y + +ARL  TI  + QY P+  + V IHK
Sbjct  61   FFDNYLTFQKEHIFSNVGVLIYVFDVQSREYEEDLARLKETIEALYQYSPDAKVFVLIHK  120

Query  142  VDGLSDEYRTDTFQDIVQRISDELSDAGYENAPVHYYLTSIYDYSVFEAFSKVIQKLIPN  201
            +D + +++R + F+D  Q I +E  D G E   + ++LTSI+D S+++A+S ++QKLIPN
Sbjct  121  MDLIQEDHREEIFRDRKQEIREESEDLGLE-LDLSFFLTSIWDESLYKAWSSIVQKLIPN  179

Query  202  LSTLENLINTLANNCGFEKTYLFDVLSKIYIASDTRP--VDMSCYEMCSDYI  251
            L TLENL+    +N   ++ +LF+  + + IA+D+R    DM  YE CSD I
Sbjct  180  LPTLENLLKVFCSNSDADEVFLFERTTFLVIATDSRSPVDDMQRYEKCSDII  231



Lambda      K        H        a         alpha
   0.319    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00008004

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved re...  297     9e-102


>CDD:398377 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region.  
GTR1 was first identified in S. cerevisiae as a suppressor of 
a mutation in RCC1. Biochemical analysis revealed that Gtr1 
is in fact a G protein of the Ras family. The RagA/B proteins 
are the human homologs of Gtr1. Included in this family 
is the human Rag C, a novel protein that has been shown to interact 
with RagA/B.
Length=231

 Score = 297 bits (764),  Expect = 9e-102, Method: Composition-based stats.
 Identities = 89/232 (38%), Positives = 142/232 (61%), Gaps = 8/232 (3%)

Query  27   RLLLMGLRRSGKSSIASVVFHKMPPNETLFLESTTRIQKDSIH--SFMDFQVWDFPGQLE  84
            ++LLMGL  SGKSS+ SV+F    P +TL L +T  ++   +     +   +WD  GQ +
Sbjct  1    KVLLMGLSGSGKSSMRSVIFSNYSPRDTLRLGATIDVEHSHVRFLGNLVLNLWDCGGQDD  60

Query  85   YLEP--SFDLEAIFGSLGALVWVIDAQ-DDYLDSVARLNRTILTVQQYYPNINIEVFIHK  141
            + +   +F  E IF ++G L++V D Q  +Y + +ARL  TI  + QY P+  + V IHK
Sbjct  61   FFDNYLTFQKEHIFSNVGVLIYVFDVQSREYEEDLARLKETIEALYQYSPDAKVFVLIHK  120

Query  142  VDGLSDEYRTDTFQDIVQRISDELSDAGYENAPVHYYLTSIYDYSVFEAFSKVIQKLIPN  201
            +D + +++R + F+D  Q I +E  D G E   + ++LTSI+D S+++A+S ++QKLIPN
Sbjct  121  MDLIQEDHREEIFRDRKQEIREESEDLGLE-LDLSFFLTSIWDESLYKAWSSIVQKLIPN  179

Query  202  LSTLENLINTLANNCGFEKTYLFDVLSKIYIASDTRP--VDMSCYEMCSDYI  251
            L TLENL+    +N   ++ +LF+  + + IA+D+R    DM  YE CSD I
Sbjct  180  LPTLENLLKVFCSNSDADEVFLFERTTFLVIATDSRSPVDDMQRYEKCSDII  231



Lambda      K        H        a         alpha
   0.318    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00002880

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00002881

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00002882

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00002883

Length=20


***** No hits found *****



Lambda      K        H        a         alpha
   0.344    0.150    0.672    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 66022480


Query= TCONS_00002884

Length=311


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00008005

Length=26


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82037150


Query= TCONS_00002885

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus). Members...  212     2e-65


>CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus).  Members of this 
family catalyze the reduction of the 5,6-double bond of a 
uridine residue on tRNA. Dihydrouridine modification of tRNA 
is widely observed in prokaryotes and eukaryotes, and also 
in some archae. Most dihydrouridines are found in the D loop 
of t-RNAs. The role of dihydrouridine in tRNA is currently 
unknown, but may increase conformational flexibility of the 
tRNA. It is likely that different family members have different 
substrate specificities, which may overlap. Dus 1 from 
Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts 
on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single 
subunit, requiring NADPH or NADH, and is stimulated by 
the presence of FAD. Some family members may be targeted to 
the mitochondria and even have a role in mitochondria.
Length=309

 Score = 212 bits (543),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 82/249 (33%), Positives = 122/249 (49%), Gaps = 29/249 (12%)

Query  40   IVAPMVDRSEFAWRMLTRSFMPPDDPKPILAYSPMYHARLFREQANVRWQHFQPTRAGLD  99
            ++APM   ++  +R L R +   D     L Y+ M  A+       VR          L 
Sbjct  1    LLAPMAGVTDLPFRRLVREYGAGD-----LVYTEMVTAKAQLRPEKVR-------IRMLS  48

Query  100  KNDNSLYLDGNPAFDRPLIVQFCANDPDDFLEAARHVAP-YCDAVDLNLGCPQGIARKGH  158
            + +             PL VQ   +DP    EAA+ V     D +D+N+GCP     +G 
Sbjct  49   ELEEP----------TPLAVQLGGSDPALLAEAAKLVEDRGADGIDINMGCPSKKVTRGG  98

Query  159  YGAFLQEDWDLIYKLINRLHKELPIPVTAKFRI--QESKEKTLEYAKMILSAGASIITLH  216
             GA L  + DL+ +++  + K + IPVT K RI   +S E  +E AK++  AGA  +T+H
Sbjct  99   GGAALLRNPDLVAQIVKAVVKAVGIPVTVKIRIGWDDSHENAVEIAKIVEDAGAQALTVH  158

Query  217  GRTREQKGHNTGLADWSYIRYLRDNLPPETVIFANGNNLNHDDLERCLEATGADGVMSAE  276
            GRTR Q     G ADW  I+ ++  +     + ANG+  + +D +RCL  TGADGVM   
Sbjct  159  GRTRAQNY--EGTADWDAIKQVKQAVS--IPVIANGDITDPEDAQRCLAYTGADGVMIGR  214

Query  277  GNLSDPAIF  285
            G L +P +F
Sbjct  215  GALGNPWLF  223



Lambda      K        H        a         alpha
   0.316    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 666189040


Query= TCONS_00002886

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus). Members...  206     9e-63


>CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus).  Members of this 
family catalyze the reduction of the 5,6-double bond of a 
uridine residue on tRNA. Dihydrouridine modification of tRNA 
is widely observed in prokaryotes and eukaryotes, and also 
in some archae. Most dihydrouridines are found in the D loop 
of t-RNAs. The role of dihydrouridine in tRNA is currently 
unknown, but may increase conformational flexibility of the 
tRNA. It is likely that different family members have different 
substrate specificities, which may overlap. Dus 1 from 
Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts 
on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single 
subunit, requiring NADPH or NADH, and is stimulated by 
the presence of FAD. Some family members may be targeted to 
the mitochondria and even have a role in mitochondria.
Length=309

 Score = 206 bits (526),  Expect = 9e-63, Method: Composition-based stats.
 Identities = 82/259 (32%), Positives = 122/259 (47%), Gaps = 39/259 (15%)

Query  40   IVAPMVDRSEFRIRTNHSISQAWRMLTRSFMPPDDPKPILAYSPMYHARLFREQANVRWQ  99
            ++APM   ++            +R L R +   D     L Y+ M  A+       VR  
Sbjct  1    LLAPMAGVTD----------LPFRRLVREYGAGD-----LVYTEMVTAKAQLRPEKVR--  43

Query  100  HFQPTRAGLDKNDNSLYLDGNPAFDRPLIVQFCANDPDDFLEAARHVAP-YCDAVDLNLG  158
                    L + +             PL VQ   +DP    EAA+ V     D +D+N+G
Sbjct  44   -----IRMLSELEEP----------TPLAVQLGGSDPALLAEAAKLVEDRGADGIDINMG  88

Query  159  CPQGIARKGHYGAFLQEDWDLIYKLINRLHKELPIPVTAKFRI--QESKEKTLEYAKMIL  216
            CP     +G  GA L  + DL+ +++  + K + IPVT K RI   +S E  +E AK++ 
Sbjct  89   CPSKKVTRGGGGAALLRNPDLVAQIVKAVVKAVGIPVTVKIRIGWDDSHENAVEIAKIVE  148

Query  217  SAGASIITLHGRTREQKGHNTGLADWSYIRYLRDNLPPETVIFANGNNLNHDDLERCLEA  276
             AGA  +T+HGRTR Q     G ADW  I+ ++  +     + ANG+  + +D +RCL  
Sbjct  149  DAGAQALTVHGRTRAQNY--EGTADWDAIKQVKQAVS--IPVIANGDITDPEDAQRCLAY  204

Query  277  TGADGVMSAEGNLSDPAIF  295
            TGADGVM   G L +P +F
Sbjct  205  TGADGVMIGRGALGNPWLF  223



Lambda      K        H        a         alpha
   0.316    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00002887

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00008006

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00002889

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.144    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00002890

Length=335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461761 pfam05859, Mis12, Mis12 protein. Kinetochores are the ...  192     3e-62


>CDD:461761 pfam05859, Mis12, Mis12 protein.  Kinetochores are the chromosomal 
sites for spindle interaction and play a vital role in 
chromosome segregation. Fission yeast kinetochore protein Mis12, 
is required for correct spindle morphogenesis, determining 
metaphase spindle length. Thirty-five to sixty percent 
extension of metaphase spindle length takes place in Mis12 mutants. 
It has been shown that Mis12 genetically interacts with 
Mal2, another inner centromere core complex protein in S. 
pombe.
Length=140

 Score = 192 bits (491),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 74/156 (47%), Positives = 97/156 (62%), Gaps = 17/156 (11%)

Query  8    LLTEHFSYTPLSLIDDIINSINNLIYQAISSLESGLLATPPERLGFAHANSSSTIPDTDE  67
            LLTEH  +TP SLIDDIIN++N+L+Y+A+ ++E  LL    E                 E
Sbjct  1    LLTEHLGFTPQSLIDDIINAVNDLLYKAVDAVEQVLLKKLEE----------------GE  44

Query  68   DGNVVYPEAKLELENGLHQLETLLEATVDKAFDKFEIYVLRNIFTVPDDLLNYIRLSHHE  127
            D      E+  E+E G H+LETLLEA VDK FDKFE+Y+LRNIF++P DL++++RL H E
Sbjct  45   DAAGADEESTEEIEKGTHKLETLLEARVDKNFDKFELYLLRNIFSIPPDLVDWVRLPHDE  104

Query  128  NLVLDPSP-NAPTPETIHALRRKLNETKKLNRSLKR  162
             L LD    +A   E I  LRRKL    KLN++LK 
Sbjct  105  GLDLDEDGEDAELDEEIDQLRRKLEAELKLNQALKA  140



Lambda      K        H        a         alpha
   0.313    0.131    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00002892

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00008007

Length=248
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463459 pfam12090, Spt20, Spt20 family. This presumed domain i...  104     2e-28


>CDD:463459 pfam12090, Spt20, Spt20 family.  This presumed domain is found 
in the Spt20 proteins from both human and yeast. The Spt20 
protein is part of the SAGA complex which is a large complex 
mediating histone deacetylation. Yeast Spt20 has been shown 
to play a role in structural integrity of the SAGA complex 
as as no intact SAGA could be purified in spt20 deletion strains.
Length=176

 Score = 104 bits (261),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 45/63 (71%), Gaps = 2/63 (3%)

Query  164  SKCPPSLIVHLHPTHFRF--EQQDGSFPYNSEMKVIIEHIRAGTVPHDMMEELLRANVRF  221
            SK PPSLI+HL+P HFR      +G FPYNSEM+  +EHI  GT+P +++E L   N++F
Sbjct  1    SKYPPSLILHLYPKHFRINNSTDEGIFPYNSEMRKFLEHIERGTIPPEILELLRDFNIKF  60

Query  222  YEG  224
            Y+G
Sbjct  61   YDG  63



Lambda      K        H        a         alpha
   0.311    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00002893

Length=948
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463459 pfam12090, Spt20, Spt20 family. This presumed domain i...  178     3e-52


>CDD:463459 pfam12090, Spt20, Spt20 family.  This presumed domain is found 
in the Spt20 proteins from both human and yeast. The Spt20 
protein is part of the SAGA complex which is a large complex 
mediating histone deacetylation. Yeast Spt20 has been shown 
to play a role in structural integrity of the SAGA complex 
as as no intact SAGA could be purified in spt20 deletion strains.
Length=176

 Score = 178 bits (454),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 81/275 (29%), Positives = 115/275 (42%), Gaps = 103/275 (37%)

Query  140  SKCPPSLIVHLHPTHFRF--EQQDGSFPYNSEMKVIIEHIRAGTVPHDMMEELLRANVRF  197
            SK PPSLI+HL+P HFR      +G FPYNSEM+  +EHI  GT+P +++E L   N++F
Sbjct  1    SKYPPSLILHLYPKHFRINNSTDEGIFPYNSEMRKFLEHIERGTIPPEILELLRDFNIKF  60

Query  198  YEGCLIVKVVDHKSVSAQARKSTAPSTNGNNTPFSIHNYNEHITPSAYVPYPEQNQLTSE  257
            Y+GCLIV+++DH++   Q+ K+T P  N                                
Sbjct  61   YDGCLIVQIIDHRNTPQQSPKTTNPQQNQQQ-----------------------------  91

Query  258  ATVTKTDAATGSQSDEKGKVEQTGDSDSSNKENESDALQKQTPAKPRVFTTVLHPTPRSL  317
                                            N + + +K+T  KPRV+ T+L PTP+SL
Sbjct  92   ----------------------------PAPGNNNSSKKKKTTVKPRVYRTLLRPTPQSL  123

Query  318  QAELTLLATTPDPRAAKQSATHSSTRPQPTSSSTAPQSPVVASNPPDRGHVAKRQKMLVE  377
             A+LT L+ TP                                            KM + 
Sbjct  124  YADLTSLSDTP--------------------------------------------KMRLS  139

Query  378  PQDLLECESKLTRALAPPLFLDPVNSLEAAQDLLK  412
             +DLLE ES++  A  PPL LDP  +     D+L 
Sbjct  140  DEDLLELESEILLATNPPLCLDPSPNPYRYSDILD  174



Lambda      K        H        a         alpha
   0.310    0.122    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1206326352


Query= TCONS_00002895

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00002894

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00008008

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00002896

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00002897

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00008009

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00002898

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00002900

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00002899

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00008011

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00008010

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00002901

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00002902

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00002903

Length=447


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00008013

Length=447


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0772    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00002904

Length=447


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00008014

Length=447


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00008015

Length=447


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00002905

Length=426


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00008016

Length=447


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00002906

Length=426


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00002907

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00002908

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family         192     3e-62


>CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family.  
Length=181

 Score = 192 bits (489),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 78/197 (40%), Positives = 101/197 (51%), Gaps = 32/197 (16%)

Query  55   GGSLLLTQFW-----DTNPAT-GPSDS--WTVHGLWPDNCD-RTYEQFCDSSREYSNITE  105
               LLLTQ W     DT P+  GP     +T+HGLWPDN     Y QFCD SR + + +E
Sbjct  1    FDFLLLTQQWPGTYCDTKPSCCGPDSGADFTIHGLWPDNDGGGGYPQFCDRSRPF-DPSE  59

Query  106  ILQAQGRTELLSYMQTYWKD-YQGDDESFWEHEWNKHGTCINTIEPSCYTDYKPQEEVGD  164
            I      ++LL+ +  YW     G+ ESFW+HEW KHGTC +T     +          D
Sbjct  60   I------SDLLNDLNKYWPSLKSGNGESFWKHEWEKHGTCASTSLDDEH----------D  103

Query  165  YFQKAVDLFKGLDTYKALAAAGITPSSSKTYKLSDILSALSAITGHEPSVGCS-----NG  219
            YF  A+ L K L+   ALA+AGI PS +KTY LSDI  AL    G  P + C+     N 
Sbjct  104  YFNAALKLRKKLNLLSALASAGIVPSDTKTYTLSDIKDALKKGFGGTPYIQCNRDPSGNQ  163

Query  220  ELNEAWYFFNIKGNLIN  236
            +L E    F+     I+
Sbjct  164  QLYEIRLCFDKGLTFID  180



Lambda      K        H        a         alpha
   0.315    0.132    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00008017

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) fa...  59.1    2e-12


>CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.  
This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=116

 Score = 59.1 bits (143),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 31/112 (28%), Positives = 48/112 (43%), Gaps = 1/112 (1%)

Query  43   FELENLPSQYGSPHGALLLAYGLDPKIALGCVAVRPLGKK-GHEAAQPQNEVQSCCEMKR  101
            +EL +       P   L L    D   + G       G+  G  +    ++     E++ 
Sbjct  5    YELLSEEFPEPWPDEPLDLLEDWDEDASEGFFVAEEDGELVGFASLSIIDDEPPVGEIEG  64

Query  102  LYVCPEARGMGLGKALLGAIIQRAKELGYREMRLDTLPSMTGARQLYKCAGF  153
            L V PE RG G+G ALL A+++ A+E G   + L+       A  LY+  GF
Sbjct  65   LAVAPEYRGKGIGTALLQALLEWARERGCERIFLEVAADNLAAIALYEKLGF  116



Lambda      K        H        a         alpha
   0.321    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00002909

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) fa...  59.1    2e-12


>CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.  
This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=116

 Score = 59.1 bits (143),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 31/112 (28%), Positives = 48/112 (43%), Gaps = 1/112 (1%)

Query  43   FELENLPSQYGSPHGALLLAYGLDPKIALGCVAVRPLGKK-GHEAAQPQNEVQSCCEMKR  101
            +EL +       P   L L    D   + G       G+  G  +    ++     E++ 
Sbjct  5    YELLSEEFPEPWPDEPLDLLEDWDEDASEGFFVAEEDGELVGFASLSIIDDEPPVGEIEG  64

Query  102  LYVCPEARGMGLGKALLGAIIQRAKELGYREMRLDTLPSMTGARQLYKCAGF  153
            L V PE RG G+G ALL A+++ A+E G   + L+       A  LY+  GF
Sbjct  65   LAVAPEYRGKGIGTALLQALLEWARERGCERIFLEVAADNLAAIALYEKLGF  116



Lambda      K        H        a         alpha
   0.321    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00002911

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462213 pfam07572, BCNT, Bucentaur or craniofacial development...  100     9e-29


>CDD:462213 pfam07572, BCNT, Bucentaur or craniofacial development.  Bucentaur 
or craniofacial development protein 1 (BCNT) in ruminents 
has a different domain architecture to that in mouse and 
human. For this reason it has been used as a model for molecular 
evolution. Both bovine and human BCNTs are phosphorylated 
by casein kinase II in vitro.
Length=71

 Score = 100 bits (252),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 45/61 (74%), Gaps = 0/61 (0%)

Query  146  GPKINTVEKSRLDWAAYVDQAGIKDELKEHSKAKEGFLGRMDFLNRVVAKREEERRNARL  205
              K++T+EKS+LDWA++ D+ GI++EL+ H+K K+G+L + DFL RV  +R E  R ARL
Sbjct  11   KKKLSTLEKSKLDWASFKDKEGIEEELELHNKGKDGYLEKQDFLQRVDLRRFEIEREARL  70

Query  206  K  206
             
Sbjct  71   A  71



Lambda      K        H        a         alpha
   0.308    0.126    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00002910

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) fa...  59.1    2e-12


>CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.  
This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=116

 Score = 59.1 bits (143),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 31/112 (28%), Positives = 48/112 (43%), Gaps = 1/112 (1%)

Query  43   FELENLPSQYGSPHGALLLAYGLDPKIALGCVAVRPLGKK-GHEAAQPQNEVQSCCEMKR  101
            +EL +       P   L L    D   + G       G+  G  +    ++     E++ 
Sbjct  5    YELLSEEFPEPWPDEPLDLLEDWDEDASEGFFVAEEDGELVGFASLSIIDDEPPVGEIEG  64

Query  102  LYVCPEARGMGLGKALLGAIIQRAKELGYREMRLDTLPSMTGARQLYKCAGF  153
            L V PE RG G+G ALL A+++ A+E G   + L+       A  LY+  GF
Sbjct  65   LAVAPEYRGKGIGTALLQALLEWARERGCERIFLEVAADNLAAIALYEKLGF  116



Lambda      K        H        a         alpha
   0.321    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00002914

Length=262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family         191     3e-62


>CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family.  
Length=181

 Score = 191 bits (488),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 78/197 (40%), Positives = 101/197 (51%), Gaps = 32/197 (16%)

Query  55   GGSLLLTQFW-----DTNPAT-GPSDS--WTVHGLWPDNCD-RTYEQFCDSSREYSNITE  105
               LLLTQ W     DT P+  GP     +T+HGLWPDN     Y QFCD SR + + +E
Sbjct  1    FDFLLLTQQWPGTYCDTKPSCCGPDSGADFTIHGLWPDNDGGGGYPQFCDRSRPF-DPSE  59

Query  106  ILQAQGRTELLSYMQTYWKD-YQGDDESFWEHEWNKHGTCINTIEPSCYTDYKPQEEVGD  164
            I      ++LL+ +  YW     G+ ESFW+HEW KHGTC +T     +          D
Sbjct  60   I------SDLLNDLNKYWPSLKSGNGESFWKHEWEKHGTCASTSLDDEH----------D  103

Query  165  YFQKAVDLFKGLDTYKALAAAGITPSSSKTYKLSDILSALSAITGHEPSVGCS-----NG  219
            YF  A+ L K L+   ALA+AGI PS +KTY LSDI  AL    G  P + C+     N 
Sbjct  104  YFNAALKLRKKLNLLSALASAGIVPSDTKTYTLSDIKDALKKGFGGTPYIQCNRDPSGNQ  163

Query  220  ELNEAWYFFNIKGNLIN  236
            +L E    F+     I+
Sbjct  164  QLYEIRLCFDKGLTFID  180



Lambda      K        H        a         alpha
   0.316    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00008018

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462213 pfam07572, BCNT, Bucentaur or craniofacial development...  100     9e-29


>CDD:462213 pfam07572, BCNT, Bucentaur or craniofacial development.  Bucentaur 
or craniofacial development protein 1 (BCNT) in ruminents 
has a different domain architecture to that in mouse and 
human. For this reason it has been used as a model for molecular 
evolution. Both bovine and human BCNTs are phosphorylated 
by casein kinase II in vitro.
Length=71

 Score = 100 bits (252),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 45/61 (74%), Gaps = 0/61 (0%)

Query  146  GPKINTVEKSRLDWAAYVDQAGIKDELKEHSKAKEGFLGRMDFLNRVVAKREEERRNARL  205
              K++T+EKS+LDWA++ D+ GI++EL+ H+K K+G+L + DFL RV  +R E  R ARL
Sbjct  11   KKKLSTLEKSKLDWASFKDKEGIEEELELHNKGKDGYLEKQDFLQRVDLRRFEIEREARL  70

Query  206  K  206
             
Sbjct  71   A  71



Lambda      K        H        a         alpha
   0.308    0.126    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00002913

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462213 pfam07572, BCNT, Bucentaur or craniofacial development...  100     9e-29


>CDD:462213 pfam07572, BCNT, Bucentaur or craniofacial development.  Bucentaur 
or craniofacial development protein 1 (BCNT) in ruminents 
has a different domain architecture to that in mouse and 
human. For this reason it has been used as a model for molecular 
evolution. Both bovine and human BCNTs are phosphorylated 
by casein kinase II in vitro.
Length=71

 Score = 100 bits (252),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 45/61 (74%), Gaps = 0/61 (0%)

Query  146  GPKINTVEKSRLDWAAYVDQAGIKDELKEHSKAKEGFLGRMDFLNRVVAKREEERRNARL  205
              K++T+EKS+LDWA++ D+ GI++EL+ H+K K+G+L + DFL RV  +R E  R ARL
Sbjct  11   KKKLSTLEKSKLDWASFKDKEGIEEELELHNKGKDGYLEKQDFLQRVDLRRFEIEREARL  70

Query  206  K  206
             
Sbjct  71   A  71



Lambda      K        H        a         alpha
   0.308    0.126    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00002912

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462213 pfam07572, BCNT, Bucentaur or craniofacial development...  100     9e-29


>CDD:462213 pfam07572, BCNT, Bucentaur or craniofacial development.  Bucentaur 
or craniofacial development protein 1 (BCNT) in ruminents 
has a different domain architecture to that in mouse and 
human. For this reason it has been used as a model for molecular 
evolution. Both bovine and human BCNTs are phosphorylated 
by casein kinase II in vitro.
Length=71

 Score = 100 bits (252),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 45/61 (74%), Gaps = 0/61 (0%)

Query  146  GPKINTVEKSRLDWAAYVDQAGIKDELKEHSKAKEGFLGRMDFLNRVVAKREEERRNARL  205
              K++T+EKS+LDWA++ D+ GI++EL+ H+K K+G+L + DFL RV  +R E  R ARL
Sbjct  11   KKKLSTLEKSKLDWASFKDKEGIEEELELHNKGKDGYLEKQDFLQRVDLRRFEIEREARL  70

Query  206  K  206
             
Sbjct  71   A  71



Lambda      K        H        a         alpha
   0.308    0.126    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00002915

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462213 pfam07572, BCNT, Bucentaur or craniofacial development...  100     9e-29


>CDD:462213 pfam07572, BCNT, Bucentaur or craniofacial development.  Bucentaur 
or craniofacial development protein 1 (BCNT) in ruminents 
has a different domain architecture to that in mouse and 
human. For this reason it has been used as a model for molecular 
evolution. Both bovine and human BCNTs are phosphorylated 
by casein kinase II in vitro.
Length=71

 Score = 100 bits (252),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 45/61 (74%), Gaps = 0/61 (0%)

Query  146  GPKINTVEKSRLDWAAYVDQAGIKDELKEHSKAKEGFLGRMDFLNRVVAKREEERRNARL  205
              K++T+EKS+LDWA++ D+ GI++EL+ H+K K+G+L + DFL RV  +R E  R ARL
Sbjct  11   KKKLSTLEKSKLDWASFKDKEGIEEELELHNKGKDGYLEKQDFLQRVDLRRFEIEREARL  70

Query  206  K  206
             
Sbjct  71   A  71



Lambda      K        H        a         alpha
   0.308    0.126    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00002916

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00002918

Length=302


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00002917

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  67.1    5e-14


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 67.1 bits (164),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 57/136 (42%), Gaps = 17/136 (13%)

Query  92   VDVFFKWIAPVLPVINRHDFMRRYRNPQDPPSI----LLLQAVLMVASRFHYDAQ-----  142
            +D+FFK   P  P+++R  F+R Y      PS     LLL A+L + + F          
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  143  ----SSGNGIISPRILYKKVKALYDAGYERDPTTVLQAVVLLGVYWDGPDDLTESGIFYW  198
                 + +GI     L   +    D         +LQA++LL +Y  G  D      + +
Sbjct  61   SLTDEAADGIHFF--LRALILIHEDFSSPSSSLWILQALLLLELYELGTGDR--KLHWRY  116

Query  199  SRLGIALAQENGLHKR  214
              L I LA+  GLH+ 
Sbjct  117  HGLAIRLARSLGLHRD  132



Lambda      K        H        a         alpha
   0.323    0.139    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00008019

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00008020

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008021

Length=302


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00002919

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  107     1e-27


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 107 bits (270),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 27/228 (12%)

Query  92   VDVFFKWIAPVLPVINRHDFMRRYRNPQDPPSI----LLLQAVLMVASRFHYDAQS----  143
            +D+FFK   P  P+++R  F+R Y      PS     LLL A+L + + F     +    
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  144  -----SGNGIISPRILYKKVKALYDAGYERDPTTVLQAVVLLGVYWDGPDDLTESGIFYW  198
                 + +GI     L   +    D         +LQA++LL +Y  G  D      + +
Sbjct  61   SLTDEAADGIHFF--LRALILIHEDFSSPSSSLWILQALLLLELYELGTGDR--KLHWRY  116

Query  199  SRLGIALAQENGLHKSENYV----TLSATKRRIWKRIWWTLYTRDRSVAAAFGRPLHINS  254
              L I LA+  GLH+  +YV     L   +  + +R++W  +  DR ++   GRP  ++ 
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSD  176

Query  255  ED------CTVEDLKESDFIEYDEENDSATDRTAIVFFMQYVKLCQLM  296
             D      C  +DL ESD  +       + +  +I   +  +KL +++
Sbjct  177  SDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKIL  224



Lambda      K        H        a         alpha
   0.321    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00008022

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00002920

Length=302


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00002921

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  107     1e-27


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 107 bits (270),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 27/228 (12%)

Query  92   VDVFFKWIAPVLPVINRHDFMRRYRNPQDPPSI----LLLQAVLMVASRFHYDAQS----  143
            +D+FFK   P  P+++R  F+R Y      PS     LLL A+L + + F     +    
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  144  -----SGNGIISPRILYKKVKALYDAGYERDPTTVLQAVVLLGVYWDGPDDLTESGIFYW  198
                 + +GI     L   +    D         +LQA++LL +Y  G  D      + +
Sbjct  61   SLTDEAADGIHFF--LRALILIHEDFSSPSSSLWILQALLLLELYELGTGDR--KLHWRY  116

Query  199  SRLGIALAQENGLHKSENYV----TLSATKRRIWKRIWWTLYTRDRSVAAAFGRPLHINS  254
              L I LA+  GLH+  +YV     L   +  + +R++W  +  DR ++   GRP  ++ 
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSD  176

Query  255  ED------CTVEDLKESDFIEYDEENDSATDRTAIVFFMQYVKLCQLM  296
             D      C  +DL ESD  +       + +  +I   +  +KL +++
Sbjct  177  SDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKIL  224



Lambda      K        H        a         alpha
   0.321    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00002922

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  110     1e-27


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 110 bits (277),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 98/228 (43%), Gaps = 27/228 (12%)

Query  92   VDVFFKWIAPVLPVINRHDFMRRYRNPQDPPSI----LLLQAVLMVASRFHYDAQ-----  142
            +D+FFK   P  P+++R  F+R Y      PS     LLL A+L + + F          
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  143  ----SSGNGIISPRILYKKVKALYDAGYERDPTTVLQAVVLLGVYWDGPDDLTESGIFYW  198
                 + +GI     L   +    D         +LQA++LL +Y  G  D      + +
Sbjct  61   SLTDEAADGIHFF--LRALILIHEDFSSPSSSLWILQALLLLELYELGTGDR--KLHWRY  116

Query  199  SRLGIALAQENGLHKSENYV----TLSATKRRIWKRIWWTLYTRDRSVAAAFGRPLHINS  254
              L I LA+  GLH+  +YV     L   +  + +R++W  +  DR ++   GRP  ++ 
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSD  176

Query  255  ED------CTVEDLKESDFIEYDEENDSATDRTAIVFFMQYVKLCQLM  296
             D      C  +DL ESD  +       + +  +I   +  +KL +++
Sbjct  177  SDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKIL  224



Lambda      K        H        a         alpha
   0.320    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 741236288


Query= TCONS_00002923

Length=503
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  107     4e-27


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 107 bits (270),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 27/228 (12%)

Query  92   VDVFFKWIAPVLPVINRHDFMRRYRNPQDPPSI----LLLQAVLMVASRFHYDAQS----  143
            +D+FFK   P  P+++R  F+R Y      PS     LLL A+L + + F     +    
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  144  -----SGNGIISPRILYKKVKALYDAGYERDPTTVLQAVVLLGVYWDGPDDLTESGIFYW  198
                 + +GI     L   +    D         +LQA++LL +Y  G  D      + +
Sbjct  61   SLTDEAADGIHFF--LRALILIHEDFSSPSSSLWILQALLLLELYELGTGDR--KLHWRY  116

Query  199  SRLGIALAQENGLHKSENYV----TLSATKRRIWKRIWWTLYTRDRSVAAAFGRPLHINS  254
              L I LA+  GLH+  +YV     L   +  + +R++W  +  DR ++   GRP  ++ 
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSD  176

Query  255  ED------CTVEDLKESDFIEYDEENDSATDRTAIVFFMQYVKLCQLM  296
             D      C  +DL ESD  +       + +  +I   +  +KL +++
Sbjct  177  SDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKIL  224



Lambda      K        H        a         alpha
   0.322    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 623795192


Query= TCONS_00008024

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  87.5    8e-21


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 87.5 bits (217),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 85/204 (42%), Gaps = 23/204 (11%)

Query  1    MRRYRNPQDPPSILLLQAVLMVASRFHYDAQ---------SSGNGIISPRILYKKVKALY  51
               + +P +  S LLL A+L + + F               + +GI     L   +    
Sbjct  25   FELFSSPSNYASPLLLLAILALGALFSESPTARSSSSLTDEAADGIHFF--LRALILIHE  82

Query  52   DAGYERDPTTVLQAVVLLGVYWDGPDDLTESGIFYWSRLGIALAQENGLHKSENYV----  107
            D         +LQA++LL +Y  G  D      + +  L I LA+  GLH+  +YV    
Sbjct  83   DFSSPSSSLWILQALLLLELYELGTGDR--KLHWRYHGLAIRLARSLGLHRDPSYVSPSW  140

Query  108  TLSATKRRIWKRIWWTLYTRDRSVAAAFGRPLHINSED------CTVEDLKESDFIEYDE  161
             L   +  + +R++W  +  DR ++   GRP  ++  D      C  +DL ESD  +   
Sbjct  141  KLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVT  200

Query  162  ENDSATDRTAIVFFMQYVKLCQLM  185
                + +  +I   +  +KL +++
Sbjct  201  LPLISLESKSIKPPLFLIKLSKIL  224



Lambda      K        H        a         alpha
   0.320    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00008026

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00002925

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  115     9e-32
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  80.9    2e-18


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 115 bits (291),  Expect = 9e-32, Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 94/194 (48%), Gaps = 18/194 (9%)

Query  7    VALVVGASRGIGRQIAIDLAKNGYKVVVAAKTTSNAYATVPFPPDPNSSQSTINTVEREI  66
            VALV GAS GIGR IA  LAK G KVV+  +                 S+  +  V +E+
Sbjct  2    VALVTGASSGIGRAIAKRLAKEGAKVVLVDR-----------------SEEKLEAVAKEL  44

Query  67   KESGGEAFALPVDVRDVKQVENLVHEAVRLTGRLDVLVYNSGAIWWSSVANTPTKRFQLM  126
               GG+A  +  DV D  QV+ LV +AV   GRLD+LV N+G       +    + ++ +
Sbjct  45   GALGGKALFIQGDVTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERV  104

Query  127  QRVNPEGLYASVQAALPYFEKNGWKGRIIVVSPPIYSRFFRGKTAYAMGKVGMSVLTKGL  186
              VN  G++   +A LP   K    GRI+ +S       + G +AY+  K  +   T+ L
Sbjct  105  IDVNLTGVFNLTRAVLPAMIKGSG-GRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSL  163

Query  187  AMDFVRQGTKDMAI  200
            A++    G +  A+
Sbjct  164  ALELAPHGIRVNAV  177


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 80.9 bits (201),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 60/207 (29%), Positives = 84/207 (41%), Gaps = 45/207 (22%)

Query  15   RGIGRQIAIDLAKNGYKVVVAAKTTSNAYATVPFPPDPNSSQSTINTVEREIKESGGEAF  74
             GIG  IA  LA+ G +VV+                D N + +    VE   +E G    
Sbjct  6    SGIGWAIARALAEEGAEVVLT---------------DLNEALA--KRVEELAEELGAAV-  47

Query  75   ALPVDVRDVKQVENLVHEAVRLTGRLDVLVYNSGAIWW---SSVANTPTKRFQLMQRVNP  131
             LP DV D +QVE LV  AV   GRLD+LV N+            +T  + F     VN 
Sbjct  48   -LPCDVTDEEQVEALVAAAVEKFGRLDILV-NNAGFAPKLKGPFLDTSREDFDRALDVNL  105

Query  132  EGLYASVQAALPYFEKNGWKGRIIVVSPPIYS---RFFRGKTAYAMGKVGMSVLTKGLAM  188
              L+   +AALP  ++    G I+ +S        R      AY   K  +  LT+ LA+
Sbjct  106  YSLFLLAKAALPLMKEG---GSIVNLS---SIGAERVVPNYNAYGAAKAALEALTRYLAV  159

Query  189  DFVRQGTKDMAITSIWPAVVRFSAISA  215
            +   +G             +R +AIS 
Sbjct  160  ELGPRG-------------IRVNAISP  173



Lambda      K        H        a         alpha
   0.317    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00008027

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  116     8e-32
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  81.3    2e-18


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 116 bits (292),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 94/194 (48%), Gaps = 18/194 (9%)

Query  7    VALVVGASRGIGRQIAIDLAKNGYKVVVAAKTTSNAYATVPFPPDPNSSQSTINTVEREI  66
            VALV GAS GIGR IA  LAK G KVV+  +                 S+  +  V +E+
Sbjct  2    VALVTGASSGIGRAIAKRLAKEGAKVVLVDR-----------------SEEKLEAVAKEL  44

Query  67   KESGGEAFALPVDVRDVKQVENLVHEAVRLTGRLDVLVYNSGAIWWSSVANTPTKRFQLM  126
               GG+A  +  DV D  QV+ LV +AV   GRLD+LV N+G       +    + ++ +
Sbjct  45   GALGGKALFIQGDVTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERV  104

Query  127  QRVNPEGLYASVQAALPYFEKNGWKGRIIVVSPPIYSRFFRGKTAYAMGKVGMSVLTKGL  186
              VN  G++   +A LP   K    GRI+ +S       + G +AY+  K  +   T+ L
Sbjct  105  IDVNLTGVFNLTRAVLPAMIKGSG-GRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSL  163

Query  187  AMDFVRQGTKDMAI  200
            A++    G +  A+
Sbjct  164  ALELAPHGIRVNAV  177


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 81.3 bits (202),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 60/207 (29%), Positives = 84/207 (41%), Gaps = 45/207 (22%)

Query  15   RGIGRQIAIDLAKNGYKVVVAAKTTSNAYATVPFPPDPNSSQSTINTVEREIKESGGEAF  74
             GIG  IA  LA+ G +VV+                D N + +    VE   +E G    
Sbjct  6    SGIGWAIARALAEEGAEVVLT---------------DLNEALA--KRVEELAEELGAAV-  47

Query  75   ALPVDVRDVKQVENLVHEAVRLTGRLDVLVYNSGAIWW---SSVANTPTKRFQLMQRVNP  131
             LP DV D +QVE LV  AV   GRLD+LV N+            +T  + F     VN 
Sbjct  48   -LPCDVTDEEQVEALVAAAVEKFGRLDILV-NNAGFAPKLKGPFLDTSREDFDRALDVNL  105

Query  132  EGLYASVQAALPYFEKNGWKGRIIVVSPPIYS---RFFRGKTAYAMGKVGMSVLTKGLAM  188
              L+   +AALP  ++    G I+ +S        R      AY   K  +  LT+ LA+
Sbjct  106  YSLFLLAKAALPLMKEG---GSIVNLS---SIGAERVVPNYNAYGAAKAALEALTRYLAV  159

Query  189  DFVRQGTKDMAITSIWPAVVRFSAISA  215
            +   +G             +R +AIS 
Sbjct  160  ELGPRG-------------IRVNAISP  173



Lambda      K        H        a         alpha
   0.317    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00002924

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  116     5e-32
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  80.6    3e-18


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 116 bits (292),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 94/194 (48%), Gaps = 18/194 (9%)

Query  7    VALVVGASRGIGRQIAIDLAKNGYKVVVAAKTTSNAYATVPFPPDPNSSQSTINTVEREI  66
            VALV GAS GIGR IA  LAK G KVV+  +                 S+  +  V +E+
Sbjct  2    VALVTGASSGIGRAIAKRLAKEGAKVVLVDR-----------------SEEKLEAVAKEL  44

Query  67   KESGGEAFALPVDVRDVKQVENLVHEAVRLTGRLDVLVYNSGAIWWSSVANTPTKRFQLM  126
               GG+A  +  DV D  QV+ LV +AV   GRLD+LV N+G       +    + ++ +
Sbjct  45   GALGGKALFIQGDVTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERV  104

Query  127  QRVNPEGLYASVQAALPYFEKNGWKGRIIVVSPPIYSRFFRGKTAYAMGKVGMSVLTKGL  186
              VN  G++   +A LP   K    GRI+ +S       + G +AY+  K  +   T+ L
Sbjct  105  IDVNLTGVFNLTRAVLPAMIKGSG-GRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSL  163

Query  187  AMDFVRQGTKDMAI  200
            A++    G +  A+
Sbjct  164  ALELAPHGIRVNAV  177


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 80.6 bits (200),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 78/186 (42%), Gaps = 32/186 (17%)

Query  15   RGIGRQIAIDLAKNGYKVVVAAKTTSNAYATVPFPPDPNSSQSTINTVEREIKESGGEAF  74
             GIG  IA  LA+ G +VV+                D N + +    VE   +E G    
Sbjct  6    SGIGWAIARALAEEGAEVVLT---------------DLNEALA--KRVEELAEELGAAV-  47

Query  75   ALPVDVRDVKQVENLVHEAVRLTGRLDVLVYNSGAIWW---SSVANTPTKRFQLMQRVNP  131
             LP DV D +QVE LV  AV   GRLD+LV N+            +T  + F     VN 
Sbjct  48   -LPCDVTDEEQVEALVAAAVEKFGRLDILV-NNAGFAPKLKGPFLDTSREDFDRALDVNL  105

Query  132  EGLYASVQAALPYFEKNGWKGRIIVVSPPIYS---RFFRGKTAYAMGKVGMSVLTKGLAM  188
              L+   +AALP  ++    G I+ +S        R      AY   K  +  LT+ LA+
Sbjct  106  YSLFLLAKAALPLMKEG---GSIVNLS---SIGAERVVPNYNAYGAAKAALEALTRYLAV  159

Query  189  DFVRQG  194
            +   +G
Sbjct  160  ELGPRG  165



Lambda      K        H        a         alpha
   0.316    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00002928

Length=558


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0643    0.140     1.90     42.6     43.6 

Effective search space used: 696403448


Query= TCONS_00002927

Length=443


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00002929

Length=586


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 738247432


Query= TCONS_00002930

Length=760


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.121    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 969131232


Query= TCONS_00002931

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.147    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00002932

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.147    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00002934

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.147    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00002933

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.134    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00008029

Length=762


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.121    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 972041536


Query= TCONS_00002936

Length=564


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.123    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 705370016


Query= TCONS_00002938

Length=620


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789057984


Query= TCONS_00002937

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.134    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00008030

Length=502


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00008031

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00008032

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00002939

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00008033

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00002940

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly ro...  121     6e-37


>CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly roll domain. 
 This domain is found in beta galactosidase enzymes. It 
has a jelly roll fold.
Length=111

 Score = 121 bits (305),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 53/115 (46%), Positives = 68/115 (59%), Gaps = 8/115 (7%)

Query  1    MGWHLPGFDDSAWTSENSATSASSALSFTGATVRFFRSVVPLNIPAGLDVSISFVLSTPT  60
             GWHLPGF  +  ++     S+        A VRF+R    L+IP G DVS+S      T
Sbjct  5    QGWHLPGFTTTNNSTWPVLYSSDYG---FHAGVRFYRGTF-LDIPDGYDVSLSLTFQGGT  60

Query  61   AAPKGYRAQLFVNGYQYGRYNPHIGNQVVFPVPPGILDYQGDNTIGLAVWAQTEE  115
            A    +R QL++NGYQ G Y PHIG Q  FPVPPGIL+Y+GDNT+ + VWA   +
Sbjct  61   A----FRVQLWLNGYQLGSYVPHIGPQTTFPVPPGILNYRGDNTLAVLVWAMGHD  111



Lambda      K        H        a         alpha
   0.318    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00008034

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly ro...  121     6e-37


>CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly roll domain. 
 This domain is found in beta galactosidase enzymes. It 
has a jelly roll fold.
Length=111

 Score = 121 bits (305),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 53/115 (46%), Positives = 68/115 (59%), Gaps = 8/115 (7%)

Query  1    MGWHLPGFDDSAWTSENSATSASSALSFTGATVRFFRSVVPLNIPAGLDVSISFVLSTPT  60
             GWHLPGF  +  ++     S+        A VRF+R    L+IP G DVS+S      T
Sbjct  5    QGWHLPGFTTTNNSTWPVLYSSDYG---FHAGVRFYRGTF-LDIPDGYDVSLSLTFQGGT  60

Query  61   AAPKGYRAQLFVNGYQYGRYNPHIGNQVVFPVPPGILDYQGDNTIGLAVWAQTEE  115
            A    +R QL++NGYQ G Y PHIG Q  FPVPPGIL+Y+GDNT+ + VWA   +
Sbjct  61   A----FRVQLWLNGYQLGSYVPHIGPQTTFPVPPGILNYRGDNTLAVLVWAMGHD  111



Lambda      K        H        a         alpha
   0.318    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00002941

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly ro...  121     6e-37


>CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly roll domain. 
 This domain is found in beta galactosidase enzymes. It 
has a jelly roll fold.
Length=111

 Score = 121 bits (305),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 53/115 (46%), Positives = 68/115 (59%), Gaps = 8/115 (7%)

Query  1    MGWHLPGFDDSAWTSENSATSASSALSFTGATVRFFRSVVPLNIPAGLDVSISFVLSTPT  60
             GWHLPGF  +  ++     S+        A VRF+R    L+IP G DVS+S      T
Sbjct  5    QGWHLPGFTTTNNSTWPVLYSSDYG---FHAGVRFYRGTF-LDIPDGYDVSLSLTFQGGT  60

Query  61   AAPKGYRAQLFVNGYQYGRYNPHIGNQVVFPVPPGILDYQGDNTIGLAVWAQTEE  115
            A    +R QL++NGYQ G Y PHIG Q  FPVPPGIL+Y+GDNT+ + VWA   +
Sbjct  61   A----FRVQLWLNGYQLGSYVPHIGPQTTFPVPPGILNYRGDNTLAVLVWAMGHD  111



Lambda      K        H        a         alpha
   0.318    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00002942

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly ro...  121     6e-37


>CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly roll domain. 
 This domain is found in beta galactosidase enzymes. It 
has a jelly roll fold.
Length=111

 Score = 121 bits (305),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 53/115 (46%), Positives = 68/115 (59%), Gaps = 8/115 (7%)

Query  1    MGWHLPGFDDSAWTSENSATSASSALSFTGATVRFFRSVVPLNIPAGLDVSISFVLSTPT  60
             GWHLPGF  +  ++     S+        A VRF+R    L+IP G DVS+S      T
Sbjct  5    QGWHLPGFTTTNNSTWPVLYSSDYG---FHAGVRFYRGTF-LDIPDGYDVSLSLTFQGGT  60

Query  61   AAPKGYRAQLFVNGYQYGRYNPHIGNQVVFPVPPGILDYQGDNTIGLAVWAQTEE  115
            A    +R QL++NGYQ G Y PHIG Q  FPVPPGIL+Y+GDNT+ + VWA   +
Sbjct  61   A----FRVQLWLNGYQLGSYVPHIGPQTTFPVPPGILNYRGDNTLAVLVWAMGHD  111



Lambda      K        H        a         alpha
   0.318    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00002944

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly ro...  121     6e-37


>CDD:463857 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly roll domain. 
 This domain is found in beta galactosidase enzymes. It 
has a jelly roll fold.
Length=111

 Score = 121 bits (305),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 53/115 (46%), Positives = 68/115 (59%), Gaps = 8/115 (7%)

Query  1    MGWHLPGFDDSAWTSENSATSASSALSFTGATVRFFRSVVPLNIPAGLDVSISFVLSTPT  60
             GWHLPGF  +  ++     S+        A VRF+R    L+IP G DVS+S      T
Sbjct  5    QGWHLPGFTTTNNSTWPVLYSSDYG---FHAGVRFYRGTF-LDIPDGYDVSLSLTFQGGT  60

Query  61   AAPKGYRAQLFVNGYQYGRYNPHIGNQVVFPVPPGILDYQGDNTIGLAVWAQTEE  115
            A    +R QL++NGYQ G Y PHIG Q  FPVPPGIL+Y+GDNT+ + VWA   +
Sbjct  61   A----FRVQLWLNGYQLGSYVPHIGPQTTFPVPPGILNYRGDNTLAVLVWAMGHD  111



Lambda      K        H        a         alpha
   0.318    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00002946

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460083 pfam01151, ELO, GNS1/SUR4 family. Members of this fami...  121     4e-34


>CDD:460083 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are 
involved in long chain fatty acid elongation systems that produce 
the 26-carbon precursors for ceramide and sphingolipid 
synthesis. Predicted to be integral membrane proteins, in 
eukaryotes they are probably located on the endoplasmic reticulum. 
Yeast ELO3 affects plasma membrane H+-ATPase activity, 
and may act on a glucose-signaling pathway that controls the 
expression of several genes that are transcriptionally regulated 
by glucose such as PMA1.
Length=242

 Score = 121 bits (307),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 82/207 (40%), Gaps = 57/207 (28%)

Query  60   LLDVRVPITIASVYAVTVVIINRINKSRGYKPWVFSQTRLFKLFVILHNVFLAIYSAWTF  119
            L      I I  +Y + V +  ++ ++R  KP+        +  +I++N+FL+++S + F
Sbjct  3    LSSPDPVILIIVLYLLFVFLGPKLMRNR--KPFDL------RRLLIVYNLFLSLFSLYGF  54

Query  120  VGMFQAFRNSWPHREDPHGVVGVLDSLCKINGPRGYGNAAIYDSVTDQWKLPNPEFQLAA  179
             GM  A               G   SLC+ +                             
Sbjct  55   YGMLPALLGWLY---------GFFWSLCQPSE----------------------------  77

Query  180  GGVPDPTDVGRMWNQGLAYL-GWIFYLSKFYEVLDTAIILAKGKKSSTLQTYHHAGAMMC  238
                        + QGL     ++FYLSK  E+LDT  ++ + K+ S L  YHH+  ++ 
Sbjct  78   ----------SPFAQGLVGFWYYLFYLSKILELLDTVFLVLRKKQLSFLHVYHHSTMLLY  127

Query  239  MWAGIRY-IAPPILIFTLVNSGIHALM  264
             W G +Y        F L+NS +H +M
Sbjct  128  SWLGYKYGTGGVGWFFILLNSFVHVIM  154



Lambda      K        H        a         alpha
   0.324    0.141    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00002945

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460083 pfam01151, ELO, GNS1/SUR4 family. Members of this fami...  121     4e-34


>CDD:460083 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are 
involved in long chain fatty acid elongation systems that produce 
the 26-carbon precursors for ceramide and sphingolipid 
synthesis. Predicted to be integral membrane proteins, in 
eukaryotes they are probably located on the endoplasmic reticulum. 
Yeast ELO3 affects plasma membrane H+-ATPase activity, 
and may act on a glucose-signaling pathway that controls the 
expression of several genes that are transcriptionally regulated 
by glucose such as PMA1.
Length=242

 Score = 121 bits (307),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 82/207 (40%), Gaps = 57/207 (28%)

Query  60   LLDVRVPITIASVYAVTVVIINRINKSRGYKPWVFSQTRLFKLFVILHNVFLAIYSAWTF  119
            L      I I  +Y + V +  ++ ++R  KP+        +  +I++N+FL+++S + F
Sbjct  3    LSSPDPVILIIVLYLLFVFLGPKLMRNR--KPFDL------RRLLIVYNLFLSLFSLYGF  54

Query  120  VGMFQAFRNSWPHREDPHGVVGVLDSLCKINGPRGYGNAAIYDSVTDQWKLPNPEFQLAA  179
             GM  A               G   SLC+ +                             
Sbjct  55   YGMLPALLGWLY---------GFFWSLCQPSE----------------------------  77

Query  180  GGVPDPTDVGRMWNQGLAYL-GWIFYLSKFYEVLDTAIILAKGKKSSTLQTYHHAGAMMC  238
                        + QGL     ++FYLSK  E+LDT  ++ + K+ S L  YHH+  ++ 
Sbjct  78   ----------SPFAQGLVGFWYYLFYLSKILELLDTVFLVLRKKQLSFLHVYHHSTMLLY  127

Query  239  MWAGIRY-IAPPILIFTLVNSGIHALM  264
             W G +Y        F L+NS +H +M
Sbjct  128  SWLGYKYGTGGVGWFFILLNSFVHVIM  154



Lambda      K        H        a         alpha
   0.324    0.141    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00008035

Length=366


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.125    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00008036

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00002947

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426077 pfam01142, TruD, tRNA pseudouridine synthase D (TruD)....  222     6e-68


>CDD:426077 pfam01142, TruD, tRNA pseudouridine synthase D (TruD).  TruD 
is responsible for synthesis of pseudouridine from uracil-13 
in transfer RNAs. The structure of TruD reveals an overall 
V-shaped molecule which contains an RNA-binding cleft.
Length=414

 Score = 222 bits (568),  Expect = 6e-68, Method: Composition-based stats.
 Identities = 128/466 (27%), Positives = 184/466 (39%), Gaps = 95/466 (20%)

Query  34   GGPYLHFTIYKENKDTMEVISFLARSLKMAPRSFQFAGTKDRRGVTVQRACVSRVFADRL  93
             GPYL   + K N DT + +  LAR+L ++ +   FAGTKD+R VT Q   +  V  + L
Sbjct  41   EGPYLILRLEKRNWDTNDAVRELARALGISRKRIGFAGTKDKRAVTTQYISIYGVDPEEL  100

Query  94   AKLNSALRNSAVGDYEYCRHGLELGDLKGNEFVITLRECIIPGVDLQNPEDAVATAKEFV  153
              LN  L++  +         L LGDL GN F I +R+         + ++A + A+   
Sbjct  101  EALN--LKDIEIEVVGRANRKLRLGDLAGNRFRIRVRDA--------DEDEAASRAEAI-  149

Query  154  GSALRNLRERGYFNYYGLQRFGTFATRTDMVGVKMLQGDFKGACDAILHYSPHILAAAQE  213
               L  L+E G  NY+G QRFG+    T +VG  +L+GD++ A D  +            
Sbjct  150  ---LEELKEFGVPNYFGYQRFGSIRPVTHLVGKAILRGDYEEAVDTYV------------  194

Query  214  GNSSSMISSDDKARAEAIHIFQTTGKVSEAVEKLPRKFSAENNLIRHLGRSQNDYLGALQ  273
            G        D +   EA   +  TG   EA+E  P+    E  ++  L  +  DY GAL+
Sbjct  195  GKPFPGEPEDTR---EAREAYAETGDWEEALELFPKSLRYERAMLHRLAENPGDYEGALR  251

Query  274  TIPRNLRLMYVHAYQSLVWNFAVGERWRLYG--DKVVEGDLVLIHEHREKVEETGPEAEV  331
             +P NL  M+VHAYQS ++N  + ER       ++ VEGD+V   +          E   
Sbjct  252  ALPPNLLRMFVHAYQSYLFNRVLSERLERGLPLNEPVEGDIVCFAD----------ERLP  301

Query  332  DADGEVVVKPAAHDSAYSAEDMFERARPLTAEEAASGEYSIFDVVLPLPGFDVVYPANEM  391
            D D    V           E   E  R L     A           PLPG+D      E 
Sbjct  302  DTDRTQRV----------TEKNIEAVRRLIKRGRAF-------PTGPLPGYDTELAEGEP  344

Query  392  TSFYKRFMGSEQGGGLDPFDMRR-KWKDISLSGGYRKVLSRMGADYSVHVKLYSQDDEQF  450
                +  +  E   GL   D +     ++S  G  R +L                     
Sbjct  345  GEIEREVLEEE---GLTLEDFKLPGIPELSSKGTRRPILLP-------------------  382

Query  451  VQTDLDRLNGKEAAIESNADSADKIAVILKFQLGSSQYATMALREL  496
                          I+  + SA    + L F L    YAT  LRE 
Sbjct  383  --------------IDDFSYSALGDGLTLSFSLPKGSYATTVLREY  414



Lambda      K        H        a         alpha
   0.319    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 637421786


Query= TCONS_00002948

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00002949

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00002951

Length=762


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 972041536


Query= TCONS_00002952

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461063 pfam03820, Mtc, Tricarboxylate carrier                     208     7e-69


>CDD:461063 pfam03820, Mtc, Tricarboxylate carrier.  
Length=319

 Score = 208 bits (533),  Expect = 7e-69, Method: Composition-based stats.
 Identities = 74/140 (53%), Positives = 94/140 (67%), Gaps = 2/140 (1%)

Query  10   DLPASQYDLNTYWGRVRHAADISDPRMLFVSPSGLEQAKRLISSYKQNH-IPVMTP-ELW  67
            DL   ++D +TYWGR++H  DI+DPR L  S + LE+AK L+  YK+    P  T  ELW
Sbjct  1    DLDKPRWDQSTYWGRLKHFFDITDPRTLLASDAELEEAKELVDDYKKGKEPPGTTEEELW  60

Query  68   RAKKVVDSTLHPDTGEPVFLPFRMSAYVLSNLVVTAGMLTPGLRTTGTLLWQIANQSLNV  127
            RAKK+ DS  HPDTGE +FLPFRMSA V  N+ +T GMLTP   T   + WQ  NQS N 
Sbjct  61   RAKKLYDSAFHPDTGEKIFLPFRMSAQVPMNMPITGGMLTPYKTTPAVIFWQWVNQSFNA  120

Query  128  AINNANANKSTPLSVSQMAK  147
            A+N AN N S+P+S SQ+A+
Sbjct  121  AVNYANRNASSPMSTSQLAQ  140



Lambda      K        H        a         alpha
   0.316    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00002953

Length=630


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00002954

Length=775


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0736    0.140     1.90     42.6     43.6 

Effective search space used: 990958512


Query= TCONS_00008038

Length=89
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461063 pfam03820, Mtc, Tricarboxylate carrier                     117     1e-34


>CDD:461063 pfam03820, Mtc, Tricarboxylate carrier.  
Length=319

 Score = 117 bits (297),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 2/72 (3%)

Query  10  DLPASQYDLNTYWGRVRHAADISDPRMLFVSPSGLEQAKRLISSYKQNH-IPVMTP-ELW  67
           DL   ++D +TYWGR++H  DI+DPR L  S + LE+AK L+  YK+    P  T  ELW
Sbjct  1   DLDKPRWDQSTYWGRLKHFFDITDPRTLLASDAELEEAKELVDDYKKGKEPPGTTEEELW  60

Query  68  RAKKVVDSTLHP  79
           RAKK+ DS  HP
Sbjct  61  RAKKLYDSAFHP  72



Lambda      K        H        a         alpha
   0.321    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00002955

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461063 pfam03820, Mtc, Tricarboxylate carrier                     475     1e-170


>CDD:461063 pfam03820, Mtc, Tricarboxylate carrier.  
Length=319

 Score = 475 bits (1224),  Expect = 1e-170, Method: Composition-based stats.
 Identities = 176/334 (53%), Positives = 223/334 (67%), Gaps = 21/334 (6%)

Query  10   DLPASQYDLNTYWGRVRHAADISDPRMLFVSPSGLEQAKRLISSYKQNH-IPVMTP-ELW  67
            DL   ++D +TYWGR++H  DI+DPR L  S + LE+AK L+  YK+    P  T  ELW
Sbjct  1    DLDKPRWDQSTYWGRLKHFFDITDPRTLLASDAELEEAKELVDDYKKGKEPPGTTEEELW  60

Query  68   RAKKVVDSTLHPDTGEPVFLPFRMSAYVLSNLVVTAGMLTPGLRTTGTLLWQIANQSLNV  127
            RAKK+ DS  HPDTGE +FLPFRMSA V  N+ +T GMLTP   T   + WQ  NQS N 
Sbjct  61   RAKKLYDSAFHPDTGEKIFLPFRMSAQVPMNMPITGGMLTPYKTTPAVIFWQWVNQSFNA  120

Query  128  AINNANANKSTPLSVSQMAKSYLMAVSASCSVALGLNALVPRLKNISPNTKLILGRLVPF  187
            A+N AN N S+P+S SQ+A++Y+ AV+A+C VALGLN+LV RLK +SP T+L+LGRLVPF
Sbjct  121  AVNYANRNASSPMSTSQLAQAYVAAVTAACGVALGLNSLVKRLK-LSPATRLLLGRLVPF  179

Query  188  AAVSSASALNVFLMRGEEIRQGIDVYPVLSEEEKKKREETGEPVHSLGKSKKAATIAVGE  247
            AAV++A+ +N+ LMR +E+R GIDV+               E  + +GKSKKAA  AVG+
Sbjct  180  AAVAAANCVNIPLMRSKELRNGIDVF--------------DEDGNVVGKSKKAAKKAVGQ  225

Query  248  TAISRVLNATPIMVVPPLILVRLEKTAWLKARPRMVTPINLGLILATSLFALPLALGAFP  307
             A+SRVL A P MV+PPLI+ RLEKT +LK RP +  PI LGLI     FALPLA   FP
Sbjct  226  VALSRVLMAAPGMVIPPLIMNRLEKTGFLKRRPWLHAPIQLGLIGLCLGFALPLACALFP  285

Query  308  QRQAISAQSLEEEFWGR----GGKDGQVEFNRGM  337
            QR +IS   LE EF       GG    V FN+G+
Sbjct  286  QRSSISVSKLEPEFQELIKKKGGPPTTVYFNKGL  319



Lambda      K        H        a         alpha
   0.317    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00008039

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461063 pfam03820, Mtc, Tricarboxylate carrier                     475     1e-170


>CDD:461063 pfam03820, Mtc, Tricarboxylate carrier.  
Length=319

 Score = 475 bits (1224),  Expect = 1e-170, Method: Composition-based stats.
 Identities = 176/334 (53%), Positives = 223/334 (67%), Gaps = 21/334 (6%)

Query  10   DLPASQYDLNTYWGRVRHAADISDPRMLFVSPSGLEQAKRLISSYKQNH-IPVMTP-ELW  67
            DL   ++D +TYWGR++H  DI+DPR L  S + LE+AK L+  YK+    P  T  ELW
Sbjct  1    DLDKPRWDQSTYWGRLKHFFDITDPRTLLASDAELEEAKELVDDYKKGKEPPGTTEEELW  60

Query  68   RAKKVVDSTLHPDTGEPVFLPFRMSAYVLSNLVVTAGMLTPGLRTTGTLLWQIANQSLNV  127
            RAKK+ DS  HPDTGE +FLPFRMSA V  N+ +T GMLTP   T   + WQ  NQS N 
Sbjct  61   RAKKLYDSAFHPDTGEKIFLPFRMSAQVPMNMPITGGMLTPYKTTPAVIFWQWVNQSFNA  120

Query  128  AINNANANKSTPLSVSQMAKSYLMAVSASCSVALGLNALVPRLKNISPNTKLILGRLVPF  187
            A+N AN N S+P+S SQ+A++Y+ AV+A+C VALGLN+LV RLK +SP T+L+LGRLVPF
Sbjct  121  AVNYANRNASSPMSTSQLAQAYVAAVTAACGVALGLNSLVKRLK-LSPATRLLLGRLVPF  179

Query  188  AAVSSASALNVFLMRGEEIRQGIDVYPVLSEEEKKKREETGEPVHSLGKSKKAATIAVGE  247
            AAV++A+ +N+ LMR +E+R GIDV+               E  + +GKSKKAA  AVG+
Sbjct  180  AAVAAANCVNIPLMRSKELRNGIDVF--------------DEDGNVVGKSKKAAKKAVGQ  225

Query  248  TAISRVLNATPIMVVPPLILVRLEKTAWLKARPRMVTPINLGLILATSLFALPLALGAFP  307
             A+SRVL A P MV+PPLI+ RLEKT +LK RP +  PI LGLI     FALPLA   FP
Sbjct  226  VALSRVLMAAPGMVIPPLIMNRLEKTGFLKRRPWLHAPIQLGLIGLCLGFALPLACALFP  285

Query  308  QRQAISAQSLEEEFWGR----GGKDGQVEFNRGM  337
            QR +IS   LE EF       GG    V FN+G+
Sbjct  286  QRSSISVSKLEPEFQELIKKKGGPPTTVYFNKGL  319



Lambda      K        H        a         alpha
   0.317    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00008040

Length=112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461063 pfam03820, Mtc, Tricarboxylate carrier                     180     2e-58


>CDD:461063 pfam03820, Mtc, Tricarboxylate carrier.  
Length=319

 Score = 180 bits (460),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 70/103 (68%), Gaps = 2/103 (2%)

Query  10   DLPASQYDLNTYWGRVRHAADISDPRMLFVSPSGLEQAKRLISSYKQNH-IPVMTP-ELW  67
            DL   ++D +TYWGR++H  DI+DPR L  S + LE+AK L+  YK+    P  T  ELW
Sbjct  1    DLDKPRWDQSTYWGRLKHFFDITDPRTLLASDAELEEAKELVDDYKKGKEPPGTTEEELW  60

Query  68   RAKKVVDSTLHPDTGEPVFLPFRMSAYVLSNLVVTAGMLTPGL  110
            RAKK+ DS  HPDTGE +FLPFRMSA V  N+ +T GMLTP  
Sbjct  61   RAKKLYDSAFHPDTGEKIFLPFRMSAQVPMNMPITGGMLTPYK  103



Lambda      K        H        a         alpha
   0.319    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00002956

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461063 pfam03820, Mtc, Tricarboxylate carrier                     359     2e-126


>CDD:461063 pfam03820, Mtc, Tricarboxylate carrier.  
Length=319

 Score = 359 bits (925),  Expect = 2e-126, Method: Composition-based stats.
 Identities = 140/262 (53%), Positives = 176/262 (67%), Gaps = 19/262 (7%)

Query  10   DTGEPVFLPFRMSAYVLSNLVVTAGMLTPGLRTTGTLLWQIANQSLNVAINNANANKSTP  69
            DTGE +FLPFRMSA V  N+ +T GMLTP   T   + WQ  NQS N A+N AN N S+P
Sbjct  73   DTGEKIFLPFRMSAQVPMNMPITGGMLTPYKTTPAVIFWQWVNQSFNAAVNYANRNASSP  132

Query  70   LSVSQMAKSYLMAVSASCSVALGLNALVPRLKNISPNTKLILGRLVPFAAVSSASALNVF  129
            +S SQ+A++Y+ AV+A+C VALGLN+LV RLK +SP T+L+LGRLVPFAAV++A+ +N+ 
Sbjct  133  MSTSQLAQAYVAAVTAACGVALGLNSLVKRLK-LSPATRLLLGRLVPFAAVAAANCVNIP  191

Query  130  LMRGEEIRQGIDVYPVLSEEEKKKREETGEPVHSLGKSKKAATIAVGETAISRVLNATPI  189
            LMR +E+R GIDV+               E  + +GKSKKAA  AVG+ A+SRVL A P 
Sbjct  192  LMRSKELRNGIDVF--------------DEDGNVVGKSKKAAKKAVGQVALSRVLMAAPG  237

Query  190  MVVPPLILVRLEKTAWLKARPRMVTPINLGLILATSLFALPLALGAFPQRQAISAQSLEE  249
            MV+PPLI+ RLEKT +LK RP +  PI LGLI     FALPLA   FPQR +IS   LE 
Sbjct  238  MVIPPLIMNRLEKTGFLKRRPWLHAPIQLGLIGLCLGFALPLACALFPQRSSISVSKLEP  297

Query  250  EFWGR----GGKDGQVEFNRGM  267
            EF       GG    V FN+G+
Sbjct  298  EFQELIKKKGGPPTTVYFNKGL  319



Lambda      K        H        a         alpha
   0.318    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00002957

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461063 pfam03820, Mtc, Tricarboxylate carrier                     475     1e-170


>CDD:461063 pfam03820, Mtc, Tricarboxylate carrier.  
Length=319

 Score = 475 bits (1224),  Expect = 1e-170, Method: Composition-based stats.
 Identities = 176/334 (53%), Positives = 223/334 (67%), Gaps = 21/334 (6%)

Query  10   DLPASQYDLNTYWGRVRHAADISDPRMLFVSPSGLEQAKRLISSYKQNH-IPVMTP-ELW  67
            DL   ++D +TYWGR++H  DI+DPR L  S + LE+AK L+  YK+    P  T  ELW
Sbjct  1    DLDKPRWDQSTYWGRLKHFFDITDPRTLLASDAELEEAKELVDDYKKGKEPPGTTEEELW  60

Query  68   RAKKVVDSTLHPDTGEPVFLPFRMSAYVLSNLVVTAGMLTPGLRTTGTLLWQIANQSLNV  127
            RAKK+ DS  HPDTGE +FLPFRMSA V  N+ +T GMLTP   T   + WQ  NQS N 
Sbjct  61   RAKKLYDSAFHPDTGEKIFLPFRMSAQVPMNMPITGGMLTPYKTTPAVIFWQWVNQSFNA  120

Query  128  AINNANANKSTPLSVSQMAKSYLMAVSASCSVALGLNALVPRLKNISPNTKLILGRLVPF  187
            A+N AN N S+P+S SQ+A++Y+ AV+A+C VALGLN+LV RLK +SP T+L+LGRLVPF
Sbjct  121  AVNYANRNASSPMSTSQLAQAYVAAVTAACGVALGLNSLVKRLK-LSPATRLLLGRLVPF  179

Query  188  AAVSSASALNVFLMRGEEIRQGIDVYPVLSEEEKKKREETGEPVHSLGKSKKAATIAVGE  247
            AAV++A+ +N+ LMR +E+R GIDV+               E  + +GKSKKAA  AVG+
Sbjct  180  AAVAAANCVNIPLMRSKELRNGIDVF--------------DEDGNVVGKSKKAAKKAVGQ  225

Query  248  TAISRVLNATPIMVVPPLILVRLEKTAWLKARPRMVTPINLGLILATSLFALPLALGAFP  307
             A+SRVL A P MV+PPLI+ RLEKT +LK RP +  PI LGLI     FALPLA   FP
Sbjct  226  VALSRVLMAAPGMVIPPLIMNRLEKTGFLKRRPWLHAPIQLGLIGLCLGFALPLACALFP  285

Query  308  QRQAISAQSLEEEFWGR----GGKDGQVEFNRGM  337
            QR +IS   LE EF       GG    V FN+G+
Sbjct  286  QRSSISVSKLEPEFQELIKKKGGPPTTVYFNKGL  319



Lambda      K        H        a         alpha
   0.317    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00002958

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461063 pfam03820, Mtc, Tricarboxylate carrier                     256     6e-87


>CDD:461063 pfam03820, Mtc, Tricarboxylate carrier.  
Length=319

 Score = 256 bits (656),  Expect = 6e-87, Method: Composition-based stats.
 Identities = 93/173 (54%), Positives = 121/173 (70%), Gaps = 3/173 (2%)

Query  10   DLPASQYDLNTYWGRVRHAADISDPRMLFVSPSGLEQAKRLISSYKQNH-IPVMTP-ELW  67
            DL   ++D +TYWGR++H  DI+DPR L  S + LE+AK L+  YK+    P  T  ELW
Sbjct  1    DLDKPRWDQSTYWGRLKHFFDITDPRTLLASDAELEEAKELVDDYKKGKEPPGTTEEELW  60

Query  68   RAKKVVDSTLHPDTGEPVFLPFRMSAYVLSNLVVTAGMLTPGLRVTGTLLWQIANQSLNV  127
            RAKK+ DS  HPDTGE +FLPFRMSA V  N+ +T GMLTP       + WQ  NQS N 
Sbjct  61   RAKKLYDSAFHPDTGEKIFLPFRMSAQVPMNMPITGGMLTPYKTTPAVIFWQWVNQSFNA  120

Query  128  AINNANANKSTPLSVSQMAKSYLMAVSASCSVALGLNALVPRLKNISPNTKLI  180
            A+N AN N S+P+S SQ+A++Y+ AV+A+C VALGLN+LV RLK +SP T+L+
Sbjct  121  AVNYANRNASSPMSTSQLAQAYVAAVTAACGVALGLNSLVKRLK-LSPATRLL  172



Lambda      K        H        a         alpha
   0.317    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00008041

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461063 pfam03820, Mtc, Tricarboxylate carrier                     272     4e-93


>CDD:461063 pfam03820, Mtc, Tricarboxylate carrier.  
Length=319

 Score = 272 bits (698),  Expect = 4e-93, Method: Composition-based stats.
 Identities = 103/197 (52%), Positives = 132/197 (67%), Gaps = 19/197 (10%)

Query  1    MAKSYLMAVSASCSVALGLNALVPRLKNISPNTKLILGRLVPFAAVSSASALNVFLMRGE  60
            +A++Y+ AV+A+C VALGLN+LV RLK +SP T+L+LGRLVPFAAV++A+ +N+ LMR +
Sbjct  138  LAQAYVAAVTAACGVALGLNSLVKRLK-LSPATRLLLGRLVPFAAVAAANCVNIPLMRSK  196

Query  61   EIRQGIDVYPVLSEEEKKKREETGEPVHSLGKSKKAATIAVGETAISRVLNATPIMVVPP  120
            E+R GIDV+               E  + +GKSKKAA  AVG+ A+SRVL A P MV+PP
Sbjct  197  ELRNGIDVF--------------DEDGNVVGKSKKAAKKAVGQVALSRVLMAAPGMVIPP  242

Query  121  LILVRLEKTAWLKARPRMVTPINLGLILATSLFALPLALGAFPQRQAISAQSLEEEFWGR  180
            LI+ RLEKT +LK RP +  PI LGLI     FALPLA   FPQR +IS   LE EF   
Sbjct  243  LIMNRLEKTGFLKRRPWLHAPIQLGLIGLCLGFALPLACALFPQRSSISVSKLEPEFQEL  302

Query  181  ----GGKDGQVEFNRGM  193
                GG    V FN+G+
Sbjct  303  IKKKGGPPTTVYFNKGL  319



Lambda      K        H        a         alpha
   0.318    0.133    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00008042

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                271     1e-86


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 271 bits (696),  Expect = 1e-86, Method: Composition-based stats.
 Identities = 154/479 (32%), Positives = 214/479 (45%), Gaps = 58/479 (12%)

Query  30   EVVVAYLDRISRYNSLLKALITV-NKNALDVARQRDQETEALLQQHGKDHTLPPLHGVPV  88
            E+V A+LDRI   N  L A +TV    AL  A   D+       Q        PLHGVP+
Sbjct  1    ELVEAFLDRIEAANPKLNAFVTVFFDEALAQAAAADK-------QRAAGDPKGPLHGVPI  53

Query  89   ILKDTYSTLDMPTTSGVKALHSLQTKADAFVVTKLRRAGAIILGKANLHELSLEGVTVSS  148
             +KD      +PTT+G KAL +     DA VV +LR+AGA+ILGK N+ E ++   T +S
Sbjct  54   AVKDNIDVKGVPTTAGSKALENYPAPYDATVVERLRKAGAVILGKTNMDEFAMGSSTENS  113

Query  149  LGGQTRNPYDLRRTPGGLSGGTAAALAANLALVGCGGDTMNSLRSPASACSIIGFRPTRG  208
            + G TRNP+DL RTPGG SGG+AAA+AA L  +  G DT  S+R PAS C ++G +PT G
Sbjct  114  VFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPASFCGLVGLKPTYG  173

Query  209  QISRRGIIPVTDTQDVAGPMARTVQDVRLLFDVMKGEDAGDEVTTDCQ-RDAMERSSETC  267
            ++SR G++    + D  GP+AR+V+D  LL  V+ G D  D  +      D  E   ++ 
Sbjct  174  RVSRYGVVGYASSLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPPVPDYAEPVKKSL  233

Query  268  GRRKRIGVLRSFFADDGDPEGSIVNQTVLDALDKARANVPVELVTLSPQRAHWDIPTLIS  327
             +  RIGV R     D DPE     +  L  L+     V VE V          +  LI+
Sbjct  234  -KGLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEV-VE-VDPPSLDYALPLYYLIA  290

Query  328  TADMQAYEFRSVIDTFLQSSLIAFTPH-------DSLNSIVASGEY-LQEAVTPALYRTL  379
             A+  +   R          L    P        D +   +  G Y L        Y   
Sbjct  291  PAEASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRRIILGNYALSAGYYDKYYLKA  350

Query  380  QKDGPYTMQSPEYESRLATIAALKKSVEDCFEEHQLDALVYP-----------HQRQLVA  428
            QK                    +++     FEE  LD L+ P                + 
Sbjct  351  QKV----------------RRLIRREFAGLFEE--LDVLLSPTAPTPAPRLGEPDDSPLV  392

Query  429  PIGSMVQPRRNGILAALTGRPAICLPFPAGFSPQTESAPQGVPIGLELMGKPWQDVDLL  487
                        +   L G PAI L  PAGF+        G+P+G++++GKP  +  LL
Sbjct  393  MYNLDDFT-AGVVPVNLAGLPAISL--PAGFT------ADGLPVGVQIIGKPGDEETLL  442



Lambda      K        H        a         alpha
   0.318    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00008043

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                247     6e-78


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 247 bits (633),  Expect = 6e-78, Method: Composition-based stats.
 Identities = 143/446 (32%), Positives = 195/446 (44%), Gaps = 50/446 (11%)

Query  30   EVVVAYLDRISRYNSLLKALITV-NKNALDVARQRDQETEALLQQHGKDHTLPPLHGVPV  88
            E+V A+LDRI   N  L A +TV    AL  A   D+       Q        PLHGVP+
Sbjct  1    ELVEAFLDRIEAANPKLNAFVTVFFDEALAQAAAADK-------QRAAGDPKGPLHGVPI  53

Query  89   ILKDTYSTLDMPTTSGVKALHSLQTKADAFVVTKLRRAGAIILGKANLHELSLEGVTVSS  148
             +KD      +PTT+G KAL +     DA VV +LR+AGA+ILGK N+ E ++   T +S
Sbjct  54   AVKDNIDVKGVPTTAGSKALENYPAPYDATVVERLRKAGAVILGKTNMDEFAMGSSTENS  113

Query  149  LGGQTRNPYDLRRTPGGLSGGTAAALAANLALVGCGGDTMNSLRSPASACSIIGFRPTRG  208
            + G TRNP+DL RTPGG SGG+AAA+AA L  +  G DT  S+R PAS C ++G +PT G
Sbjct  114  VFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPASFCGLVGLKPTYG  173

Query  209  QISRRGIIPVTDTQDVAGPMARTVQDVRLLFDVMKGEDAGDEVTTDCQ-RDAMERSSETC  267
            ++SR G++    + D  GP+AR+V+D  LL  V+ G D  D  +      D  E   ++ 
Sbjct  174  RVSRYGVVGYASSLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPPVPDYAEPVKKSL  233

Query  268  GRRKRIGVLRSFFADDGDPEGSIVNQTVLDALDKARANVPVELVTLSPQRAHWDIPTLIS  327
             +  RIGV R     D DPE     +  L  L+     V VE V          +  LI+
Sbjct  234  -KGLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEV-VE-VDPPSLDYALPLYYLIA  290

Query  328  TADMQAYEFRSVIDTFLQSSLIAFTPH-------DSLNSIVASGEY-LQEAVTPALYRTL  379
             A+  +   R          L    P        D +   +  G Y L        Y   
Sbjct  291  PAEASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRRIILGNYALSAGYYDKYYLKA  350

Query  380  QKDGPYTMQSPEYESRLATIAALKKSVEDCFEEHQLDALVYP-----------HQRQLVA  428
            QK                    +++     FEE  LD L+ P                + 
Sbjct  351  QKV----------------RRLIRREFAGLFEE--LDVLLSPTAPTPAPRLGEPDDSPLV  392

Query  429  PIGSMVQPRRNGILAALTGRPAICLP  454
                        +   L G PAI LP
Sbjct  393  MYNLDDFT-AGVVPVNLAGLPAISLP  417



Lambda      K        H        a         alpha
   0.318    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00008044

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                247     6e-78


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 247 bits (633),  Expect = 6e-78, Method: Composition-based stats.
 Identities = 143/446 (32%), Positives = 195/446 (44%), Gaps = 50/446 (11%)

Query  30   EVVVAYLDRISRYNSLLKALITV-NKNALDVARQRDQETEALLQQHGKDHTLPPLHGVPV  88
            E+V A+LDRI   N  L A +TV    AL  A   D+       Q        PLHGVP+
Sbjct  1    ELVEAFLDRIEAANPKLNAFVTVFFDEALAQAAAADK-------QRAAGDPKGPLHGVPI  53

Query  89   ILKDTYSTLDMPTTSGVKALHSLQTKADAFVVTKLRRAGAIILGKANLHELSLEGVTVSS  148
             +KD      +PTT+G KAL +     DA VV +LR+AGA+ILGK N+ E ++   T +S
Sbjct  54   AVKDNIDVKGVPTTAGSKALENYPAPYDATVVERLRKAGAVILGKTNMDEFAMGSSTENS  113

Query  149  LGGQTRNPYDLRRTPGGLSGGTAAALAANLALVGCGGDTMNSLRSPASACSIIGFRPTRG  208
            + G TRNP+DL RTPGG SGG+AAA+AA L  +  G DT  S+R PAS C ++G +PT G
Sbjct  114  VFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPASFCGLVGLKPTYG  173

Query  209  QISRRGIIPVTDTQDVAGPMARTVQDVRLLFDVMKGEDAGDEVTTDCQ-RDAMERSSETC  267
            ++SR G++    + D  GP+AR+V+D  LL  V+ G D  D  +      D  E   ++ 
Sbjct  174  RVSRYGVVGYASSLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPPVPDYAEPVKKSL  233

Query  268  GRRKRIGVLRSFFADDGDPEGSIVNQTVLDALDKARANVPVELVTLSPQRAHWDIPTLIS  327
             +  RIGV R     D DPE     +  L  L+     V VE V          +  LI+
Sbjct  234  -KGLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEV-VE-VDPPSLDYALPLYYLIA  290

Query  328  TADMQAYEFRSVIDTFLQSSLIAFTPH-------DSLNSIVASGEY-LQEAVTPALYRTL  379
             A+  +   R          L    P        D +   +  G Y L        Y   
Sbjct  291  PAEASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRRIILGNYALSAGYYDKYYLKA  350

Query  380  QKDGPYTMQSPEYESRLATIAALKKSVEDCFEEHQLDALVYP-----------HQRQLVA  428
            QK                    +++     FEE  LD L+ P                + 
Sbjct  351  QKV----------------RRLIRREFAGLFEE--LDVLLSPTAPTPAPRLGEPDDSPLV  392

Query  429  PIGSMVQPRRNGILAALTGRPAICLP  454
                        +   L G PAI LP
Sbjct  393  MYNLDDFT-AGVVPVNLAGLPAISLP  417



Lambda      K        H        a         alpha
   0.318    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00002960

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00008045

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                194     6e-59


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 194 bits (496),  Expect = 6e-59, Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 164/376 (44%), Gaps = 42/376 (11%)

Query  1    MPTTSGVKALHSLQTKADAFVVTKLRRAGAIILGKANLHELSLEGVTVSSLGGQTRNPYD  60
            +PTT+G KAL +     DA VV +LR+AGA+ILGK N+ E ++   T +S+ G TRNP+D
Sbjct  64   VPTTAGSKALENYPAPYDATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTRNPWD  123

Query  61   LRRTPGGLSGGTAAALAANLALVGCGGDTMNSLRSPASACSIIGFRPTRGQISRRGIIPV  120
            L RTPGG SGG+AAA+AA L  +  G DT  S+R PAS C ++G +PT G++SR G++  
Sbjct  124  LSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPASFCGLVGLKPTYGRVSRYGVVGY  183

Query  121  TDTQDVAGPMARTVQDVRLLFDVMKGEDAGDEVTTDCQ-RDAMERSSETCGRRKRIGVLR  179
              + D  GP+AR+V+D  LL  V+ G D  D  +      D  E   ++  +  RIGV R
Sbjct  184  ASSLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPPVPDYAEPVKKSL-KGLRIGVYR  242

Query  180  SFFADDGDPEGSIVNQTVLDALDKARANVPVELVTLSPQRAHWDIPTLISTADMQAYEFR  239
                 D DPE     +  L  L+     V VE V          +  LI+ A+  +   R
Sbjct  243  EDGYFDLDPEVRRAVEEALAQLEALGHEV-VE-VDPPSLDYALPLYYLIAPAEASSNLAR  300

Query  240  SVIDTFLQSSLIAFTPH-------DSLNSIVASGEY-LQEAVTPALYRTLQKDGPYTMQS  291
                      L    P        D +   +  G Y L        Y   QK        
Sbjct  301  YDGVPSGPDDLSELYPRTRAEGLGDEVKRRIILGNYALSAGYYDKYYLKAQKV-------  353

Query  292  PEYESRLATIAALKKSVEDCFEEHQLDALVYP-----------HQRQLVAPIGSMVQPRR  340
                        +++     FEE  LD L+ P                +           
Sbjct  354  ---------RRLIRREFAGLFEE--LDVLLSPTAPTPAPRLGEPDDSPLVMYNLDDFT-A  401

Query  341  NGILAALTGRPAICLP  356
              +   L G PAI LP
Sbjct  402  GVVPVNLAGLPAISLP  417



Lambda      K        H        a         alpha
   0.318    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00008046

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                190     3e-57


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 190 bits (484),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 104/293 (35%), Positives = 144/293 (49%), Gaps = 12/293 (4%)

Query  1    MPTTSGVKALHSLQTKADAFVVTKLRRAGAIILGKANLHELSLEGVTVSSLGGQTRNPYD  60
            +PTT+G KAL +     DA VV +LR+AGA+ILGK N+ E ++   T +S+ G TRNP+D
Sbjct  64   VPTTAGSKALENYPAPYDATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTRNPWD  123

Query  61   LRRTPGGLSGGTAAALAANLALVGCGGDTMNSLRSPASACSIIGFRPTRGQISRRGIIPV  120
            L RTPGG SGG+AAA+AA L  +  G DT  S+R PAS C ++G +PT G++SR G++  
Sbjct  124  LSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPASFCGLVGLKPTYGRVSRYGVVGY  183

Query  121  TDTQDVAGPMARTVQDVRLLFDVMKGEDAGDEVTTDCQ-RDAMERSSETCGRRKRIGVLR  179
              + D  GP+AR+V+D  LL  V+ G D  D  +      D  E   ++  +  RIGV R
Sbjct  184  ASSLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPPVPDYAEPVKKSL-KGLRIGVYR  242

Query  180  SFFADDGDPEGSIVNQTVLDALDKARANVPVELVTLSPQRAHWDIPTLISTADMQAYEFR  239
                 D DPE     +  L  L+     V VE V          +  LI+ A+  +   R
Sbjct  243  EDGYFDLDPEVRRAVEEALAQLEALGHEV-VE-VDPPSLDYALPLYYLIAPAEASSNLAR  300

Query  240  SVIDTFLQSSLIAFTPH-------DSLNSIVASGEY-LQEAVTPALYRTLQKD  284
                      L    P        D +   +  G Y L        Y   QK 
Sbjct  301  YDGVPSGPDDLSELYPRTRAEGLGDEVKRRIILGNYALSAGYYDKYYLKAQKV  353



Lambda      K        H        a         alpha
   0.318    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00002961

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00002962

Length=872
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463330 pfam11718, CPSF73-100_C, Pre-mRNA 3'-end-processing en...  284     4e-91
CDD:463203 pfam10996, Beta-Casp, Beta-Casp domain. The beta-CASP ...  119     1e-32
CDD:425851 pfam00753, Lactamase_B, Metallo-beta-lactamase superfa...  77.8    9e-17


>CDD:463330 pfam11718, CPSF73-100_C, Pre-mRNA 3'-end-processing endonuclease 
polyadenylation factor C-term.  This is the C-terminal conserved 
region of the pre-mRNA 3'-end-processing of the polyadenylation 
factor CPSF-73/CPSF-100 proteins. The exact function 
of this domain is not known.
Length=204

 Score = 284 bits (730),  Expect = 4e-91, Method: Composition-based stats.
 Identities = 115/307 (37%), Positives = 143/307 (47%), Gaps = 103/307 (34%)

Query  533  RLMSGVLVQNGFDLSLMAPDDLREYAGLTTTTITCKQHITLSSASMDLIRWALEGTFGAI  592
            +L+SGVLV+  F+  LMAP+DLREY GL+TTT+T +Q I LS AS  L+RW LE  FG +
Sbjct  1    QLVSGVLVKKDFNYHLMAPEDLREYTGLSTTTVTQRQSIPLS-ASFSLLRWHLEQMFGDV  59

Query  593  EELGSNERSKVKEESTKAVNGEQEIKEEPADEEIPMEETQTYLVMGCVLIRYHSRTREVE  652
            EEL                                 E   T  VMGCV +       EV 
Sbjct  60   EELE------------------------------DKEGKPTLRVMGCVTVTVE--KGEVT  87

Query  653  LEWEGNMMNDGVADAVMAVLLTVESSPASVKQSAKLKHHHHHHSDLELPNPHAHQGPEET  712
            LEWEGN +ND +AD+V+AVLL+VESSPASVK S              L NPHA   PEE 
Sbjct  88   LEWEGNPVNDMIADSVLAVLLSVESSPASVKLSEL-----------PLRNPHAESDPEER  136

Query  713  FENLLMMLEAQFGSNIAPIERPRIPSGIRANRTTKADPSVSAAVKTKSDAAGETPAESQE  772
             E L+M+LEAQFG                                               
Sbjct  137  IERLIMLLEAQFG-----------------------------------------------  149

Query  773  DESTEEIEAAELARLQALGIPYPGIEIKVDKHVARVWLENFEVECANTVLRDRVRVVIER  832
            ++   E+               PG+E+ VD  VA + LE  EVEC + VL+DRV  V+ER
Sbjct  150  EDCVIELP------------KVPGLEVTVDGKVANIDLETLEVECEDEVLKDRVETVVER  197

Query  833  AVETVSS  839
            AVE V+ 
Sbjct  198  AVEAVAP  204


>CDD:463203 pfam10996, Beta-Casp, Beta-Casp domain.  The beta-CASP domain 
is found C terminal to the beta-lactamase domain in pre-mRNA 
3'-end-processing endonuclease. The active site of this enzyme 
is located at the interface of these two domains.
Length=109

 Score = 119 bits (302),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 60/134 (45%), Gaps = 25/134 (19%)

Query  264  AQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRLFRQRMAEAE  323
            AQELL +LDE W     L KIPIY     A +   VY+ Y   ++D  +     +     
Sbjct  1    AQELLYLLDELWREG-RLPKIPIYLDSPLAIKATEVYRRYPEYLDDEARHFVISKSESKA  59

Query  324  ASGDKSASAGPWDFKFVRSLRSLERFDDVGGCVMLASPGMLQTGTSRELLERWAPNERNG  383
             +  K                        G  V++AS GML+ G SR  L+ WAP+ +N 
Sbjct  60   INEGK------------------------GPKVIIASSGMLEGGRSRHHLKHWAPDPKNT  95

Query  384  VVMTGYSVEGTMAK  397
            V+ TGY  EGT+ +
Sbjct  96   VIFTGYQAEGTLGR  109


>CDD:425851 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily.  

Length=196

 Score = 77.8 bits (191),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 27/173 (16%), Positives = 52/173 (30%), Gaps = 17/173 (10%)

Query  33   GNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLSTVDILLISHFHVDHSSA  92
                  + ++I+  G  V++D G          L          +D ++++H H DH   
Sbjct  1    LGPGQVNSYLIEGGGGAVLIDTGGSAEAALL-LLLAALGLGPKDIDAVILTHGHFDHIGG  59

Query  93   LPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSDQRTTLYTEHDHLSTLPLI  152
            L  +   T+    V    A + + + L     R+                          
Sbjct  60   LGELAEATDVPVIVVAEEARELLDEELGLAASRLGLPGP--------------PVVPLPP  105

Query  153  ETIDFNTTHTVNSIRITPFPAGHVLGAAMFLISIAGLNILFTGD--YSREEDR  203
            + +       +          G   G    ++   G  +LFTGD  ++ E  R
Sbjct  106  DVVLEEGDGILGGGLGLLVTHGPGHGPGHVVVYYGGGKVLFTGDLLFAGEIGR  158



Lambda      K        H        a         alpha
   0.316    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1115394378


Query= TCONS_00008048

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00002963

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00002964

Length=872
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463330 pfam11718, CPSF73-100_C, Pre-mRNA 3'-end-processing en...  284     4e-91
CDD:463203 pfam10996, Beta-Casp, Beta-Casp domain. The beta-CASP ...  119     1e-32
CDD:425851 pfam00753, Lactamase_B, Metallo-beta-lactamase superfa...  77.8    9e-17


>CDD:463330 pfam11718, CPSF73-100_C, Pre-mRNA 3'-end-processing endonuclease 
polyadenylation factor C-term.  This is the C-terminal conserved 
region of the pre-mRNA 3'-end-processing of the polyadenylation 
factor CPSF-73/CPSF-100 proteins. The exact function 
of this domain is not known.
Length=204

 Score = 284 bits (730),  Expect = 4e-91, Method: Composition-based stats.
 Identities = 115/307 (37%), Positives = 143/307 (47%), Gaps = 103/307 (34%)

Query  533  RLMSGVLVQNGFDLSLMAPDDLREYAGLTTTTITCKQHITLSSASMDLIRWALEGTFGAI  592
            +L+SGVLV+  F+  LMAP+DLREY GL+TTT+T +Q I LS AS  L+RW LE  FG +
Sbjct  1    QLVSGVLVKKDFNYHLMAPEDLREYTGLSTTTVTQRQSIPLS-ASFSLLRWHLEQMFGDV  59

Query  593  EELGSNERSKVKEESTKAVNGEQEIKEEPADEEIPMEETQTYLVMGCVLIRYHSRTREVE  652
            EEL                                 E   T  VMGCV +       EV 
Sbjct  60   EELE------------------------------DKEGKPTLRVMGCVTVTVE--KGEVT  87

Query  653  LEWEGNMMNDGVADAVMAVLLTVESSPASVKQSAKLKHHHHHHSDLELPNPHAHQGPEET  712
            LEWEGN +ND +AD+V+AVLL+VESSPASVK S              L NPHA   PEE 
Sbjct  88   LEWEGNPVNDMIADSVLAVLLSVESSPASVKLSEL-----------PLRNPHAESDPEER  136

Query  713  FENLLMMLEAQFGSNIAPIERPRIPSGIRANRTTKADPSVSAAVKTKSDAAGETPAESQE  772
             E L+M+LEAQFG                                               
Sbjct  137  IERLIMLLEAQFG-----------------------------------------------  149

Query  773  DESTEEIEAAELARLQALGIPYPGIEIKVDKHVARVWLENFEVECANTVLRDRVRVVIER  832
            ++   E+               PG+E+ VD  VA + LE  EVEC + VL+DRV  V+ER
Sbjct  150  EDCVIELP------------KVPGLEVTVDGKVANIDLETLEVECEDEVLKDRVETVVER  197

Query  833  AVETVSS  839
            AVE V+ 
Sbjct  198  AVEAVAP  204


>CDD:463203 pfam10996, Beta-Casp, Beta-Casp domain.  The beta-CASP domain 
is found C terminal to the beta-lactamase domain in pre-mRNA 
3'-end-processing endonuclease. The active site of this enzyme 
is located at the interface of these two domains.
Length=109

 Score = 119 bits (302),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 60/134 (45%), Gaps = 25/134 (19%)

Query  264  AQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRLFRQRMAEAE  323
            AQELL +LDE W     L KIPIY     A +   VY+ Y   ++D  +     +     
Sbjct  1    AQELLYLLDELWREG-RLPKIPIYLDSPLAIKATEVYRRYPEYLDDEARHFVISKSESKA  59

Query  324  ASGDKSASAGPWDFKFVRSLRSLERFDDVGGCVMLASPGMLQTGTSRELLERWAPNERNG  383
             +  K                        G  V++AS GML+ G SR  L+ WAP+ +N 
Sbjct  60   INEGK------------------------GPKVIIASSGMLEGGRSRHHLKHWAPDPKNT  95

Query  384  VVMTGYSVEGTMAK  397
            V+ TGY  EGT+ +
Sbjct  96   VIFTGYQAEGTLGR  109


>CDD:425851 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily.  

Length=196

 Score = 77.8 bits (191),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 27/173 (16%), Positives = 52/173 (30%), Gaps = 17/173 (10%)

Query  33   GNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLSTVDILLISHFHVDHSSA  92
                  + ++I+  G  V++D G          L          +D ++++H H DH   
Sbjct  1    LGPGQVNSYLIEGGGGAVLIDTGGSAEAALL-LLLAALGLGPKDIDAVILTHGHFDHIGG  59

Query  93   LPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSDQRTTLYTEHDHLSTLPLI  152
            L  +   T+    V    A + + + L     R+                          
Sbjct  60   LGELAEATDVPVIVVAEEARELLDEELGLAASRLGLPGP--------------PVVPLPP  105

Query  153  ETIDFNTTHTVNSIRITPFPAGHVLGAAMFLISIAGLNILFTGD--YSREEDR  203
            + +       +          G   G    ++   G  +LFTGD  ++ E  R
Sbjct  106  DVVLEEGDGILGGGLGLLVTHGPGHGPGHVVVYYGGGKVLFTGDLLFAGEIGR  158



Lambda      K        H        a         alpha
   0.316    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1115394378


Query= TCONS_00002965

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460383 pfam01922, SRP19, SRP19 protein. The signal recognitio...  167     6e-54


>CDD:460383 pfam01922, SRP19, SRP19 protein.  The signal recognition particle 
(SRP) binds to the signal peptide of proteins as they are 
being translated. The binding of the SRP halts translation 
and the complex is then transported to the endoplasmic reticulum's 
cytoplasmic surface. The SRP then aids translocation 
of the protein through the ER membrane. The SRP is a ribonucleoprotein 
that is composed of a small RNA and several proteins. 
One of these proteins is the SRP19 protein (Sec65 in 
yeast).
Length=94

 Score = 167 bits (426),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 55/95 (58%), Positives = 70/95 (74%), Gaps = 1/95 (1%)

Query  59   CLYPVYFDKTRSRAEGRKVGIELATENPLARDIVDAVQMLGLNVGFEPEKLHPKDWANPG  118
             +YP YFD  R+RAEGR+V  ELA ENP A++I DA + LGL V  EP+K HP+DWANPG
Sbjct  1    VIYPAYFDSKRTRAEGRRVPKELAVENPTAKEIADACKKLGLPVVVEPDKTHPRDWANPG  60

Query  119  RVRVMLKDEDGNLINPKIKNKHHLYILVAQYLKAH  153
            RVRV LK++DG  +NP+IKNK  L   +A+Y+K  
Sbjct  61   RVRVQLKNDDG-PVNPEIKNKKQLLKKIAEYIKKL  94



Lambda      K        H        a         alpha
   0.313    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00002966

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460383 pfam01922, SRP19, SRP19 protein. The signal recognitio...  141     6e-45


>CDD:460383 pfam01922, SRP19, SRP19 protein.  The signal recognition particle 
(SRP) binds to the signal peptide of proteins as they are 
being translated. The binding of the SRP halts translation 
and the complex is then transported to the endoplasmic reticulum's 
cytoplasmic surface. The SRP then aids translocation 
of the protein through the ER membrane. The SRP is a ribonucleoprotein 
that is composed of a small RNA and several proteins. 
One of these proteins is the SRP19 protein (Sec65 in 
yeast).
Length=94

 Score = 141 bits (357),  Expect = 6e-45, Method: Composition-based stats.
 Identities = 50/80 (63%), Positives = 62/80 (78%), Gaps = 1/80 (1%)

Query  59   CLYPVYFDKTRSRAEGRKVGIELATENPLARDIVDAVQMLGLNVGFEPEKLHPKDWANPG  118
             +YP YFD  R+RAEGR+V  ELA ENP A++I DA + LGL V  EP+K HP+DWANPG
Sbjct  1    VIYPAYFDSKRTRAEGRRVPKELAVENPTAKEIADACKKLGLPVVVEPDKTHPRDWANPG  60

Query  119  RVRVMLKDEDGNLINPKIKN  138
            RVRV LK++DG  +NP+IKN
Sbjct  61   RVRVQLKNDDG-PVNPEIKN  79



Lambda      K        H        a         alpha
   0.316    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00002967

Length=746
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  76.0    1e-15
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  61.9    4e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 76.0 bits (187),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 22/188 (12%)

Query  369  FMSGVHAISPVIHPPTILKLYNAFWDWYDYSSYSGEPCPDPSFIPLLYAI-WYGGSVTIS  427
            F    H   P++H P+ L+ Y   +      S             LL AI   G   +  
Sbjct  4    FFKNFHPQFPILHRPSFLRDYFELF------SSPSNYASPL----LLLAILALGALFS--  51

Query  428  IRMIKAEFNVSSRSALSKTYHDEVTRWLTEIS---FPRSPSLQGLAAYLLVQTILSREEE  484
                 A  + S     +   H  + R L  I       S SL  L A LL++       +
Sbjct  52   -ESPTARSSSSLTDEAADGIHFFL-RALILIHEDFSSPSSSLWILQALLLLELYELGTGD  109

Query  485  PLTSSLFISLSMRVAQTMGLHRDPANFGIEPC----EAEYRRRIWWHIVHMDGVVAMSSG  540
                  +  L++R+A+++GLHRDP+           EAE RRR++W   ++D ++++  G
Sbjct  110  RKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILG  169

Query  541  LPPLVSDE  548
             PPL+SD 
Sbjct  170  RPPLLSDS  177


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 61.9 bits (151),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 17/33 (52%), Positives = 19/33 (58%), Gaps = 0/33 (0%)

Query  62  YSCHTCRRRKVKCDKVHPVCGNCAKNETECVYD  94
            +C  CR+RKVKCD   P C  C KN  EC Y 
Sbjct  1   TACDNCRKRKVKCDGKKPACSRCIKNGLECTYS  33



Lambda      K        H        a         alpha
   0.316    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 948759104


Query= TCONS_00002968

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00002969

Length=1041
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  74.8    4e-15


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 74.8 bits (184),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 22/188 (12%)

Query  318  FMSGVHAISPVIHPPTILKLYNAFWDWYDYSSYSGEPCPDPSFIPLLYAI-WYGGSVTIS  376
            F    H   P++H P+ L+ Y   +      S             LL AI   G   +  
Sbjct  4    FFKNFHPQFPILHRPSFLRDYFELF------SSPSNYASPL----LLLAILALGALFS--  51

Query  377  IRMIKAEFNVSSRSALSKTYHDEVTRWLTEIS---FPRSPSLQGLAAYLLVQTILSREEE  433
                 A  + S     +   H  + R L  I       S SL  L A LL++       +
Sbjct  52   -ESPTARSSSSLTDEAADGIHFFL-RALILIHEDFSSPSSSLWILQALLLLELYELGTGD  109

Query  434  PLTSSLFISLSMRVAQTMGLHRDPANFGIEPC----EAEYRRRIWWHIVHMDGVVAMSSG  489
                  +  L++R+A+++GLHRDP+           EAE RRR++W   ++D ++++  G
Sbjct  110  RKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILG  169

Query  490  LPPLVSDE  497
             PPL+SD 
Sbjct  170  RPPLLSDS  177



Lambda      K        H        a         alpha
   0.316    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1338002820


Query= TCONS_00008049

Length=695
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  75.2    2e-15


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 75.2 bits (185),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 22/188 (12%)

Query  318  FMSGVHAISPVIHPPTILKLYNAFWDWYDYSSYSGEPCPDPSFIPLLYAI-WYGGSVTIS  376
            F    H   P++H P+ L+ Y   +      S             LL AI   G   +  
Sbjct  4    FFKNFHPQFPILHRPSFLRDYFELF------SSPSNYASPL----LLLAILALGALFS--  51

Query  377  IRMIKAEFNVSSRSALSKTYHDEVTRWLTEIS---FPRSPSLQGLAAYLLVQTILSREEE  433
                 A  + S     +   H  + R L  I       S SL  L A LL++       +
Sbjct  52   -ESPTARSSSSLTDEAADGIHFFL-RALILIHEDFSSPSSSLWILQALLLLELYELGTGD  109

Query  434  PLTSSLFISLSMRVAQTMGLHRDPANFGIEPC----EAEYRRRIWWHIVHMDGVVAMSSG  489
                  +  L++R+A+++GLHRDP+           EAE RRR++W   ++D ++++  G
Sbjct  110  RKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILG  169

Query  490  LPPLVSDE  497
             PPL+SD 
Sbjct  170  RPPLLSDS  177



Lambda      K        H        a         alpha
   0.317    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 887823580


Query= TCONS_00008052

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00008054

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  107     1e-28


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 107 bits (269),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 56/137 (41%), Gaps = 3/137 (2%)

Query  205  FTVGVFIVDTWQYFLHRAMHLNRWLYVTFHSRHHRLYVPYAFGALYNHPVEGFLLDTAGA  264
              +G+ + D   Y++HR +H   WL+  FH  HH    P A  AL  HP+E  L      
Sbjct  1    VLLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLF-ALLV  59

Query  265  GIGFLVTRMTNRQAMWFFTCSTIKTVDDHCGYAFPWDPLQHFTNNNAAYHDIHHQSWGIK  324
             +  L+  +     +      T+  +  H G  FP   L         +H +HH     +
Sbjct  60   LLPLLLLGLPLLAFLLGLLLGTLWYLFIHSGLLFPLPWLLKRLLGTPRFHRLHHSKNE-E  118

Query  325  TNFSQPFFTFWDRLFNT  341
             NF    F  WDRLF T
Sbjct  119  YNFG-VTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.324    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0756    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00008055

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  107     1e-28


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 107 bits (269),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 56/137 (41%), Gaps = 3/137 (2%)

Query  205  FTVGVFIVDTWQYFLHRAMHLNRWLYVTFHSRHHRLYVPYAFGALYNHPVEGFLLDTAGA  264
              +G+ + D   Y++HR +H   WL+  FH  HH    P A  AL  HP+E  L      
Sbjct  1    VLLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLF-ALLV  59

Query  265  GIGFLVTRMTNRQAMWFFTCSTIKTVDDHCGYAFPWDPLQHFTNNNAAYHDIHHQSWGIK  324
             +  L+  +     +      T+  +  H G  FP   L         +H +HH     +
Sbjct  60   LLPLLLLGLPLLAFLLGLLLGTLWYLFIHSGLLFPLPWLLKRLLGTPRFHRLHHSKNE-E  118

Query  325  TNFSQPFFTFWDRLFNT  341
             NF    F  WDRLF T
Sbjct  119  YNFG-VTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.324    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00008056

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00002971

Length=424


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00008058

Length=258


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00008057

Length=258


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00002974

Length=1507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  120     6e-32
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  96.6    3e-22


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 120 bits (303),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 52/169 (31%), Positives = 76/169 (45%), Gaps = 27/169 (16%)

Query  1265  LRNVSFVANPGERIGIVGRTGSGKSTLGLSLLRVVHLTSGSITIDGLDISQIHLHRLRTS  1324
             L+NVS   NPGE + +VG  G+GKSTL   +  ++  T G+I +DG D++      LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1325  VTLIPQEPVLFSG-DVQSNL-------DPFGEASETELHSALSACTSIQVHGGPAGEAGT  1376
             +  + Q+P LF    V+ NL              +     AL              + G 
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALE-------------KLG-  106

Query  1377  NKPTTRALTLDTPIAANGENFSQGQRQVLSIARAVCRRSKVVLLDEATA  1425
                       D P+       S GQRQ ++IARA+  + K++LLDE TA
Sbjct  107   -----LGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 100 bits (252),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 74/149 (50%), Gaps = 18/149 (12%)

Query  653  LHDISVSFKQSALNVVAGPTGSGKTSLLLSLLGETVLESGTATC-------------PQD  699
            L ++S++     +  + GP G+GK++LL  + G      GT                 ++
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  700  VAYVPQSPWLQND-TIRQNIIFYSSFDEARYNTVIEASGLIQDLQQLPAGDL--TLVGER  756
            + YV Q P L    T+R+N+           +   + +   + L++L  GDL    VGER
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKG--LSKREKDARAEEALEKLGLGDLADRPVGER  118

Query  757  GTSLSGGQKQRVSLARALYSRSSTLLLDD  785
              +LSGGQ+QRV++ARAL ++   LLLD+
Sbjct  119  PGTLSGGQRQRVAIARALLTKPKLLLLDE  147


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 96.6 bits (241),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 99/276 (36%), Gaps = 13/276 (5%)

Query  932   MLATVTVQFAYFSITYWLSIWTSAYEKYDHPNSLFYLAVYAAAIVSFLLLQITNNLLYQH  991
             +L  +       +    L            P +   L VY+ A++   L Q   + L  +
Sbjct  5     ILLAILSGAISPAFPLVLGRILDVLLPDGDPET-QALNVYSLALLLLGLAQFILSFLQSY  63

Query  992   -GSWTAAK---KMHRKLVEAVLSAPISWFDENPIGRAINRFGNDTRSMDTVLIDWLRMSI  1047
               + T  +   ++ RKL + +L  P+S+FD N +G  ++R  NDT  +   L + L +  
Sbjct  64    LLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGEKLGLLF  123

Query  1048  ENGLRFLLRIASIASIMPIFGLPAAVVCTIGFLIGEMYTRAQISIKRLCSINYSPIFSHF  1107
             ++    +  I  +        L    V  +  L+  ++ +    + R      +   S  
Sbjct  124   QSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVA  183

Query  1108  TDSLAGMTVIRAREGMTGVFQRLLAEKLAVHARSAEAQYNCNRWVSVRSDLCAASVAASA  1167
              +SL+G+  ++A  G          + L    ++   +   N      +        A A
Sbjct  184   EESLSGIRTVKAF-GREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALA  242

Query  1168  GCVAYFWSGSAGLVGFSLTNAIGLSQTILTLVRTMN  1203
                   W G+  ++   L+  +G     L+L   + 
Sbjct  243   -----LWFGAYLVISGELS--VGDLVAFLSLFAQLF  271


 Score = 65.4 bits (160),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 100/307 (33%), Gaps = 46/307 (15%)

Query  304  IKGMVCWAAATSVADFFAPFSMLRLLAYL----EDPTGAVVHPALWISLLFIGPMMRSFC  359
            I  ++  A  +       P  + R+L  L    +  T A+   +L + LL +    +   
Sbjct  2    ILAILL-AILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGL---AQFIL  57

Query  360  YQQYIFTATRLLVRVNISLVQDIYHKAMRSYIYDDSVHSHGRPHPQESARHKAHTPKRTS  419
                 +       R++  L + ++ K +R                Q  +           
Sbjct  58   SFLQSYLLNHTGERLSRRLRRKLFKKILR----------------QPMSFF--------D  93

Query  420  KTNQANVTSLMSYDVDAI-----YNSRDIF-YVATAVPISTTIAMVFLYRMLGWP-SLFG  472
              +   + S ++ D   I          +F  +AT V     I ++F Y   GW  +L  
Sbjct  94   TNSVGELLSRLTNDTSKIRDGLGEKLGLLFQSLATIV---GGIIVMFYY---GWKLTLVL  147

Query  473  VLTLCCLTPLPALASRRVSRIQQSVMRATDIRLARISEYLNSIRTLKFFGWEPAAVASIN  532
            +  L     + A+ ++ + ++ +   +A     +   E L+ IRT+K FG E   +   +
Sbjct  148  LAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYD  207

Query  533  EIRNVEQRRLWRRSVFAAAISMAGDLLPMMSLLVMFSVVVFFTDR-PLRAPVAFTSLSIM  591
            +      +   +++V           +  +S  +      +      L        LS+ 
Sbjct  208  KALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVAFLSLF  267

Query  592  ETLRSQF  598
              L    
Sbjct  268  AQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1910602496


Query= TCONS_00002973

Length=1507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  120     6e-32
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  96.6    3e-22


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 120 bits (303),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 52/169 (31%), Positives = 76/169 (45%), Gaps = 27/169 (16%)

Query  1265  LRNVSFVANPGERIGIVGRTGSGKSTLGLSLLRVVHLTSGSITIDGLDISQIHLHRLRTS  1324
             L+NVS   NPGE + +VG  G+GKSTL   +  ++  T G+I +DG D++      LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1325  VTLIPQEPVLFSG-DVQSNL-------DPFGEASETELHSALSACTSIQVHGGPAGEAGT  1376
             +  + Q+P LF    V+ NL              +     AL              + G 
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALE-------------KLG-  106

Query  1377  NKPTTRALTLDTPIAANGENFSQGQRQVLSIARAVCRRSKVVLLDEATA  1425
                       D P+       S GQRQ ++IARA+  + K++LLDE TA
Sbjct  107   -----LGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 100 bits (252),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 74/149 (50%), Gaps = 18/149 (12%)

Query  653  LHDISVSFKQSALNVVAGPTGSGKTSLLLSLLGETVLESGTATC-------------PQD  699
            L ++S++     +  + GP G+GK++LL  + G      GT                 ++
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  700  VAYVPQSPWLQND-TIRQNIIFYSSFDEARYNTVIEASGLIQDLQQLPAGDL--TLVGER  756
            + YV Q P L    T+R+N+           +   + +   + L++L  GDL    VGER
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKG--LSKREKDARAEEALEKLGLGDLADRPVGER  118

Query  757  GTSLSGGQKQRVSLARALYSRSSTLLLDD  785
              +LSGGQ+QRV++ARAL ++   LLLD+
Sbjct  119  PGTLSGGQRQRVAIARALLTKPKLLLLDE  147


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 96.6 bits (241),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 99/276 (36%), Gaps = 13/276 (5%)

Query  932   MLATVTVQFAYFSITYWLSIWTSAYEKYDHPNSLFYLAVYAAAIVSFLLLQITNNLLYQH  991
             +L  +       +    L            P +   L VY+ A++   L Q   + L  +
Sbjct  5     ILLAILSGAISPAFPLVLGRILDVLLPDGDPET-QALNVYSLALLLLGLAQFILSFLQSY  63

Query  992   -GSWTAAK---KMHRKLVEAVLSAPISWFDENPIGRAINRFGNDTRSMDTVLIDWLRMSI  1047
               + T  +   ++ RKL + +L  P+S+FD N +G  ++R  NDT  +   L + L +  
Sbjct  64    LLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGEKLGLLF  123

Query  1048  ENGLRFLLRIASIASIMPIFGLPAAVVCTIGFLIGEMYTRAQISIKRLCSINYSPIFSHF  1107
             ++    +  I  +        L    V  +  L+  ++ +    + R      +   S  
Sbjct  124   QSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVA  183

Query  1108  TDSLAGMTVIRAREGMTGVFQRLLAEKLAVHARSAEAQYNCNRWVSVRSDLCAASVAASA  1167
              +SL+G+  ++A  G          + L    ++   +   N      +        A A
Sbjct  184   EESLSGIRTVKAF-GREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALA  242

Query  1168  GCVAYFWSGSAGLVGFSLTNAIGLSQTILTLVRTMN  1203
                   W G+  ++   L+  +G     L+L   + 
Sbjct  243   -----LWFGAYLVISGELS--VGDLVAFLSLFAQLF  271


 Score = 65.4 bits (160),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 100/307 (33%), Gaps = 46/307 (15%)

Query  304  IKGMVCWAAATSVADFFAPFSMLRLLAYL----EDPTGAVVHPALWISLLFIGPMMRSFC  359
            I  ++  A  +       P  + R+L  L    +  T A+   +L + LL +    +   
Sbjct  2    ILAILL-AILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGL---AQFIL  57

Query  360  YQQYIFTATRLLVRVNISLVQDIYHKAMRSYIYDDSVHSHGRPHPQESARHKAHTPKRTS  419
                 +       R++  L + ++ K +R                Q  +           
Sbjct  58   SFLQSYLLNHTGERLSRRLRRKLFKKILR----------------QPMSFF--------D  93

Query  420  KTNQANVTSLMSYDVDAI-----YNSRDIF-YVATAVPISTTIAMVFLYRMLGWP-SLFG  472
              +   + S ++ D   I          +F  +AT V     I ++F Y   GW  +L  
Sbjct  94   TNSVGELLSRLTNDTSKIRDGLGEKLGLLFQSLATIV---GGIIVMFYY---GWKLTLVL  147

Query  473  VLTLCCLTPLPALASRRVSRIQQSVMRATDIRLARISEYLNSIRTLKFFGWEPAAVASIN  532
            +  L     + A+ ++ + ++ +   +A     +   E L+ IRT+K FG E   +   +
Sbjct  148  LAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYD  207

Query  533  EIRNVEQRRLWRRSVFAAAISMAGDLLPMMSLLVMFSVVVFFTDR-PLRAPVAFTSLSIM  591
            +      +   +++V           +  +S  +      +      L        LS+ 
Sbjct  208  KALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVAFLSLF  267

Query  592  ETLRSQF  598
              L    
Sbjct  268  AQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1910602496


Query= TCONS_00002972

Length=1507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  120     6e-32
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  96.6    3e-22


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 120 bits (303),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 52/169 (31%), Positives = 76/169 (45%), Gaps = 27/169 (16%)

Query  1265  LRNVSFVANPGERIGIVGRTGSGKSTLGLSLLRVVHLTSGSITIDGLDISQIHLHRLRTS  1324
             L+NVS   NPGE + +VG  G+GKSTL   +  ++  T G+I +DG D++      LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1325  VTLIPQEPVLFSG-DVQSNL-------DPFGEASETELHSALSACTSIQVHGGPAGEAGT  1376
             +  + Q+P LF    V+ NL              +     AL              + G 
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALE-------------KLG-  106

Query  1377  NKPTTRALTLDTPIAANGENFSQGQRQVLSIARAVCRRSKVVLLDEATA  1425
                       D P+       S GQRQ ++IARA+  + K++LLDE TA
Sbjct  107   -----LGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 100 bits (252),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 74/149 (50%), Gaps = 18/149 (12%)

Query  653  LHDISVSFKQSALNVVAGPTGSGKTSLLLSLLGETVLESGTATC-------------PQD  699
            L ++S++     +  + GP G+GK++LL  + G      GT                 ++
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  700  VAYVPQSPWLQND-TIRQNIIFYSSFDEARYNTVIEASGLIQDLQQLPAGDL--TLVGER  756
            + YV Q P L    T+R+N+           +   + +   + L++L  GDL    VGER
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKG--LSKREKDARAEEALEKLGLGDLADRPVGER  118

Query  757  GTSLSGGQKQRVSLARALYSRSSTLLLDD  785
              +LSGGQ+QRV++ARAL ++   LLLD+
Sbjct  119  PGTLSGGQRQRVAIARALLTKPKLLLLDE  147


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 96.6 bits (241),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 99/276 (36%), Gaps = 13/276 (5%)

Query  932   MLATVTVQFAYFSITYWLSIWTSAYEKYDHPNSLFYLAVYAAAIVSFLLLQITNNLLYQH  991
             +L  +       +    L            P +   L VY+ A++   L Q   + L  +
Sbjct  5     ILLAILSGAISPAFPLVLGRILDVLLPDGDPET-QALNVYSLALLLLGLAQFILSFLQSY  63

Query  992   -GSWTAAK---KMHRKLVEAVLSAPISWFDENPIGRAINRFGNDTRSMDTVLIDWLRMSI  1047
               + T  +   ++ RKL + +L  P+S+FD N +G  ++R  NDT  +   L + L +  
Sbjct  64    LLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGEKLGLLF  123

Query  1048  ENGLRFLLRIASIASIMPIFGLPAAVVCTIGFLIGEMYTRAQISIKRLCSINYSPIFSHF  1107
             ++    +  I  +        L    V  +  L+  ++ +    + R      +   S  
Sbjct  124   QSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVA  183

Query  1108  TDSLAGMTVIRAREGMTGVFQRLLAEKLAVHARSAEAQYNCNRWVSVRSDLCAASVAASA  1167
              +SL+G+  ++A  G          + L    ++   +   N      +        A A
Sbjct  184   EESLSGIRTVKAF-GREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALA  242

Query  1168  GCVAYFWSGSAGLVGFSLTNAIGLSQTILTLVRTMN  1203
                   W G+  ++   L+  +G     L+L   + 
Sbjct  243   -----LWFGAYLVISGELS--VGDLVAFLSLFAQLF  271


 Score = 65.4 bits (160),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 100/307 (33%), Gaps = 46/307 (15%)

Query  304  IKGMVCWAAATSVADFFAPFSMLRLLAYL----EDPTGAVVHPALWISLLFIGPMMRSFC  359
            I  ++  A  +       P  + R+L  L    +  T A+   +L + LL +    +   
Sbjct  2    ILAILL-AILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGL---AQFIL  57

Query  360  YQQYIFTATRLLVRVNISLVQDIYHKAMRSYIYDDSVHSHGRPHPQESARHKAHTPKRTS  419
                 +       R++  L + ++ K +R                Q  +           
Sbjct  58   SFLQSYLLNHTGERLSRRLRRKLFKKILR----------------QPMSFF--------D  93

Query  420  KTNQANVTSLMSYDVDAI-----YNSRDIF-YVATAVPISTTIAMVFLYRMLGWP-SLFG  472
              +   + S ++ D   I          +F  +AT V     I ++F Y   GW  +L  
Sbjct  94   TNSVGELLSRLTNDTSKIRDGLGEKLGLLFQSLATIV---GGIIVMFYY---GWKLTLVL  147

Query  473  VLTLCCLTPLPALASRRVSRIQQSVMRATDIRLARISEYLNSIRTLKFFGWEPAAVASIN  532
            +  L     + A+ ++ + ++ +   +A     +   E L+ IRT+K FG E   +   +
Sbjct  148  LAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYD  207

Query  533  EIRNVEQRRLWRRSVFAAAISMAGDLLPMMSLLVMFSVVVFFTDR-PLRAPVAFTSLSIM  591
            +      +   +++V           +  +S  +      +      L        LS+ 
Sbjct  208  KALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVAFLSLF  267

Query  592  ETLRSQF  598
              L    
Sbjct  268  AQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1910602496


Query= TCONS_00002976

Length=1609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  120     6e-32
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  96.2    4e-22


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 120 bits (303),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 52/169 (31%), Positives = 76/169 (45%), Gaps = 27/169 (16%)

Query  1346  LRNVSFVANPGERIGIVGRTGSGKSTLGLSLLRVVHLTSGSITIDGLDISQIHLHRLRTS  1405
             L+NVS   NPGE + +VG  G+GKSTL   +  ++  T G+I +DG D++      LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1406  VTLIPQEPVLFSG-DVQSNL-------DPFGEASETELHSALSACTSIQVHGGPAGEAGT  1457
             +  + Q+P LF    V+ NL              +     AL              + G 
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALE-------------KLG-  106

Query  1458  NKPTTRALTLDTPIAANGENFSQGQRQVLSIARAVCRRSKVVLLDEATA  1506
                       D P+       S GQRQ ++IARA+  + K++LLDE TA
Sbjct  107   -----LGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 101 bits (253),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 74/149 (50%), Gaps = 18/149 (12%)

Query  734  LHDISVSFKQSALNVVAGPTGSGKTSLLLSLLGETVLESGTATC-------------PQD  780
            L ++S++     +  + GP G+GK++LL  + G      GT                 ++
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  781  VAYVPQSPWLQND-TIRQNIIFYSSFDEARYNTVIEASGLIQDLQQLPAGDL--TLVGER  837
            + YV Q P L    T+R+N+           +   + +   + L++L  GDL    VGER
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKG--LSKREKDARAEEALEKLGLGDLADRPVGER  118

Query  838  GTSLSGGQKQRVSLARALYSRSSTLLLDD  866
              +LSGGQ+QRV++ARAL ++   LLLD+
Sbjct  119  PGTLSGGQRQRVAIARALLTKPKLLLLDE  147


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 96.2 bits (240),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 99/276 (36%), Gaps = 13/276 (5%)

Query  1013  MLATVTVQFAYFSITYWLSIWTSAYEKYDHPNSLFYLAVYAAAIVSFLLLQITNNLLYQH  1072
             +L  +       +    L            P +   L VY+ A++   L Q   + L  +
Sbjct  5     ILLAILSGAISPAFPLVLGRILDVLLPDGDPET-QALNVYSLALLLLGLAQFILSFLQSY  63

Query  1073  -GSWTAAK---KMHRKLVEAVLSAPISWFDENPIGRAINRFGNDTRSMDTVLIDWLRMSI  1128
               + T  +   ++ RKL + +L  P+S+FD N +G  ++R  NDT  +   L + L +  
Sbjct  64    LLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGEKLGLLF  123

Query  1129  ENGLRFLLRIASIASIMPIFGLPAAVVCTIGFLIGEMYTRAQISIKRLCSINYSPIFSHF  1188
             ++    +  I  +        L    V  +  L+  ++ +    + R      +   S  
Sbjct  124   QSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVA  183

Query  1189  TDSLAGMTVIRAREGMTGVFQRLLAEKLAVHARSAEAQYNCNRWVSVRSDLCAASVAASA  1248
              +SL+G+  ++A  G          + L    ++   +   N      +        A A
Sbjct  184   EESLSGIRTVKAF-GREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALA  242

Query  1249  GCVAYFWSGSAGLVGFSLTNAIGLSQTILTLVRTMN  1284
                   W G+  ++   L+  +G     L+L   + 
Sbjct  243   -----LWFGAYLVISGELS--VGDLVAFLSLFAQLF  271


 Score = 65.0 bits (159),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 100/307 (33%), Gaps = 46/307 (15%)

Query  385  IKGMVCWAAATSVADFFAPFSMLRLLAYL----EDPTGAVVHPALWISLLFIGPMMRSFC  440
            I  ++  A  +       P  + R+L  L    +  T A+   +L + LL +    +   
Sbjct  2    ILAILL-AILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGL---AQFIL  57

Query  441  YQQYIFTATRLLVRVNISLVQDIYHKAMRSYIYDDSVHSHGRPHPQESARHKAHTPKRTS  500
                 +       R++  L + ++ K +R                Q  +           
Sbjct  58   SFLQSYLLNHTGERLSRRLRRKLFKKILR----------------QPMSFF--------D  93

Query  501  KTNQANVTSLMSYDVDAI-----YNSRDIF-YVATAVPISTTIAMVFLYRMLGWP-SLFG  553
              +   + S ++ D   I          +F  +AT V     I ++F Y   GW  +L  
Sbjct  94   TNSVGELLSRLTNDTSKIRDGLGEKLGLLFQSLATIV---GGIIVMFYY---GWKLTLVL  147

Query  554  VLTLCCLTPLPALASRRVSRIQQSVMRATDIRLARISEYLNSIRTLKFFGWEPAAVASIN  613
            +  L     + A+ ++ + ++ +   +A     +   E L+ IRT+K FG E   +   +
Sbjct  148  LAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYD  207

Query  614  EIRNVEQRRLWRRSVFAAAISMAGDLLPMMSLLVMFSVVVFFTDR-PLRAPVAFTSLSIM  672
            +      +   +++V           +  +S  +      +      L        LS+ 
Sbjct  208  KALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVAFLSLF  267

Query  673  ETLRSQF  679
              L    
Sbjct  268  AQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2049012620


Query= TCONS_00002975

Length=1609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  120     6e-32
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  96.2    4e-22


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 120 bits (303),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 52/169 (31%), Positives = 76/169 (45%), Gaps = 27/169 (16%)

Query  1346  LRNVSFVANPGERIGIVGRTGSGKSTLGLSLLRVVHLTSGSITIDGLDISQIHLHRLRTS  1405
             L+NVS   NPGE + +VG  G+GKSTL   +  ++  T G+I +DG D++      LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1406  VTLIPQEPVLFSG-DVQSNL-------DPFGEASETELHSALSACTSIQVHGGPAGEAGT  1457
             +  + Q+P LF    V+ NL              +     AL              + G 
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALE-------------KLG-  106

Query  1458  NKPTTRALTLDTPIAANGENFSQGQRQVLSIARAVCRRSKVVLLDEATA  1506
                       D P+       S GQRQ ++IARA+  + K++LLDE TA
Sbjct  107   -----LGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 101 bits (253),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 74/149 (50%), Gaps = 18/149 (12%)

Query  734  LHDISVSFKQSALNVVAGPTGSGKTSLLLSLLGETVLESGTATC-------------PQD  780
            L ++S++     +  + GP G+GK++LL  + G      GT                 ++
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  781  VAYVPQSPWLQND-TIRQNIIFYSSFDEARYNTVIEASGLIQDLQQLPAGDL--TLVGER  837
            + YV Q P L    T+R+N+           +   + +   + L++L  GDL    VGER
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKG--LSKREKDARAEEALEKLGLGDLADRPVGER  118

Query  838  GTSLSGGQKQRVSLARALYSRSSTLLLDD  866
              +LSGGQ+QRV++ARAL ++   LLLD+
Sbjct  119  PGTLSGGQRQRVAIARALLTKPKLLLLDE  147


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 96.2 bits (240),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 99/276 (36%), Gaps = 13/276 (5%)

Query  1013  MLATVTVQFAYFSITYWLSIWTSAYEKYDHPNSLFYLAVYAAAIVSFLLLQITNNLLYQH  1072
             +L  +       +    L            P +   L VY+ A++   L Q   + L  +
Sbjct  5     ILLAILSGAISPAFPLVLGRILDVLLPDGDPET-QALNVYSLALLLLGLAQFILSFLQSY  63

Query  1073  -GSWTAAK---KMHRKLVEAVLSAPISWFDENPIGRAINRFGNDTRSMDTVLIDWLRMSI  1128
               + T  +   ++ RKL + +L  P+S+FD N +G  ++R  NDT  +   L + L +  
Sbjct  64    LLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGEKLGLLF  123

Query  1129  ENGLRFLLRIASIASIMPIFGLPAAVVCTIGFLIGEMYTRAQISIKRLCSINYSPIFSHF  1188
             ++    +  I  +        L    V  +  L+  ++ +    + R      +   S  
Sbjct  124   QSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVA  183

Query  1189  TDSLAGMTVIRAREGMTGVFQRLLAEKLAVHARSAEAQYNCNRWVSVRSDLCAASVAASA  1248
              +SL+G+  ++A  G          + L    ++   +   N      +        A A
Sbjct  184   EESLSGIRTVKAF-GREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALA  242

Query  1249  GCVAYFWSGSAGLVGFSLTNAIGLSQTILTLVRTMN  1284
                   W G+  ++   L+  +G     L+L   + 
Sbjct  243   -----LWFGAYLVISGELS--VGDLVAFLSLFAQLF  271


 Score = 65.0 bits (159),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 100/307 (33%), Gaps = 46/307 (15%)

Query  385  IKGMVCWAAATSVADFFAPFSMLRLLAYL----EDPTGAVVHPALWISLLFIGPMMRSFC  440
            I  ++  A  +       P  + R+L  L    +  T A+   +L + LL +    +   
Sbjct  2    ILAILL-AILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGL---AQFIL  57

Query  441  YQQYIFTATRLLVRVNISLVQDIYHKAMRSYIYDDSVHSHGRPHPQESARHKAHTPKRTS  500
                 +       R++  L + ++ K +R                Q  +           
Sbjct  58   SFLQSYLLNHTGERLSRRLRRKLFKKILR----------------QPMSFF--------D  93

Query  501  KTNQANVTSLMSYDVDAI-----YNSRDIF-YVATAVPISTTIAMVFLYRMLGWP-SLFG  553
              +   + S ++ D   I          +F  +AT V     I ++F Y   GW  +L  
Sbjct  94   TNSVGELLSRLTNDTSKIRDGLGEKLGLLFQSLATIV---GGIIVMFYY---GWKLTLVL  147

Query  554  VLTLCCLTPLPALASRRVSRIQQSVMRATDIRLARISEYLNSIRTLKFFGWEPAAVASIN  613
            +  L     + A+ ++ + ++ +   +A     +   E L+ IRT+K FG E   +   +
Sbjct  148  LAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYD  207

Query  614  EIRNVEQRRLWRRSVFAAAISMAGDLLPMMSLLVMFSVVVFFTDR-PLRAPVAFTSLSIM  672
            +      +   +++V           +  +S  +      +      L        LS+ 
Sbjct  208  KALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVAFLSLF  267

Query  673  ETLRSQF  679
              L    
Sbjct  268  AQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2049012620


Query= TCONS_00002977

Length=455


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00008059

Length=1505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  120     6e-32
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  96.2    5e-22


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 120 bits (303),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 52/169 (31%), Positives = 76/169 (45%), Gaps = 27/169 (16%)

Query  1265  LRNVSFVANPGERIGIVGRTGSGKSTLGLSLLRVVHLTSGSITIDGLDISQIHLHRLRTS  1324
             L+NVS   NPGE + +VG  G+GKSTL   +  ++  T G+I +DG D++      LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1325  VTLIPQEPVLFSG-DVQSNL-------DPFGEASETELHSALSACTSIQVHGGPAGEAGT  1376
             +  + Q+P LF    V+ NL              +     AL              + G 
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALE-------------KLG-  106

Query  1377  NKPTTRALTLDTPIAANGENFSQGQRQVLSIARAVCRRSKVVLLDEATA  1425
                       D P+       S GQRQ ++IARA+  + K++LLDE TA
Sbjct  107   -----LGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 100 bits (252),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 74/149 (50%), Gaps = 18/149 (12%)

Query  653  LHDISVSFKQSALNVVAGPTGSGKTSLLLSLLGETVLESGTATC-------------PQD  699
            L ++S++     +  + GP G+GK++LL  + G      GT                 ++
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  700  VAYVPQSPWLQND-TIRQNIIFYSSFDEARYNTVIEASGLIQDLQQLPAGDL--TLVGER  756
            + YV Q P L    T+R+N+           +   + +   + L++L  GDL    VGER
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKG--LSKREKDARAEEALEKLGLGDLADRPVGER  118

Query  757  GTSLSGGQKQRVSLARALYSRSSTLLLDD  785
              +LSGGQ+QRV++ARAL ++   LLLD+
Sbjct  119  PGTLSGGQRQRVAIARALLTKPKLLLLDE  147


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 96.2 bits (240),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 99/276 (36%), Gaps = 13/276 (5%)

Query  932   MLATVTVQFAYFSITYWLSIWTSAYEKYDHPNSLFYLAVYAAAIVSFLLLQITNNLLYQH  991
             +L  +       +    L            P +   L VY+ A++   L Q   + L  +
Sbjct  5     ILLAILSGAISPAFPLVLGRILDVLLPDGDPET-QALNVYSLALLLLGLAQFILSFLQSY  63

Query  992   -GSWTAAK---KMHRKLVEAVLSAPISWFDENPIGRAINRFGNDTRSMDTVLIDWLRMSI  1047
               + T  +   ++ RKL + +L  P+S+FD N +G  ++R  NDT  +   L + L +  
Sbjct  64    LLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGEKLGLLF  123

Query  1048  ENGLRFLLRIASIASIMPIFGLPAAVVCTIGFLIGEMYTRAQISIKRLCSINYSPIFSHF  1107
             ++    +  I  +        L    V  +  L+  ++ +    + R      +   S  
Sbjct  124   QSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVA  183

Query  1108  TDSLAGMTVIRAREGMTGVFQRLLAEKLAVHARSAEAQYNCNRWVSVRSDLCAASVAASA  1167
              +SL+G+  ++A  G          + L    ++   +   N      +        A A
Sbjct  184   EESLSGIRTVKAF-GREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALA  242

Query  1168  GCVAYFWSGSAGLVGFSLTNAIGLSQTILTLVRTMN  1203
                   W G+  ++   L+  +G     L+L   + 
Sbjct  243   -----LWFGAYLVISGELS--VGDLVAFLSLFAQLF  271


 Score = 64.6 bits (158),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 100/307 (33%), Gaps = 46/307 (15%)

Query  304  IKGMVCWAAATSVADFFAPFSMLRLLAYL----EDPTGAVVHPALWISLLFIGPMMRSFC  359
            I  ++  A  +       P  + R+L  L    +  T A+   +L + LL +    +   
Sbjct  2    ILAILL-AILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGL---AQFIL  57

Query  360  YQQYIFTATRLLVRVNISLVQDIYHKAMRSYIYDDSVHSHGRPHPQESARHKAHTPKRTS  419
                 +       R++  L + ++ K +R                Q  +           
Sbjct  58   SFLQSYLLNHTGERLSRRLRRKLFKKILR----------------QPMSFF--------D  93

Query  420  KTNQANVTSLMSYDVDAI-----YNSRDIF-YVATAVPISTTIAMVFLYRMLGWP-SLFG  472
              +   + S ++ D   I          +F  +AT V     I ++F Y   GW  +L  
Sbjct  94   TNSVGELLSRLTNDTSKIRDGLGEKLGLLFQSLATIV---GGIIVMFYY---GWKLTLVL  147

Query  473  VLTLCCLTPLPALASRRVSRIQQSVMRATDIRLARISEYLNSIRTLKFFGWEPAAVASIN  532
            +  L     + A+ ++ + ++ +   +A     +   E L+ IRT+K FG E   +   +
Sbjct  148  LAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYD  207

Query  533  EIRNVEQRRLWRRSVFAAAISMAGDLLPMMSLLVMFSVVVFFTDR-PLRAPVAFTSLSIM  591
            +      +   +++V           +  +S  +      +      L        LS+ 
Sbjct  208  KALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVAFLSLF  267

Query  592  ETLRSQF  598
              L    
Sbjct  268  AQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 1907888572


Query= TCONS_00002980

Length=1528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  120     6e-32
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  96.2    4e-22


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 120 bits (303),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 52/169 (31%), Positives = 76/169 (45%), Gaps = 27/169 (16%)

Query  1265  LRNVSFVANPGERIGIVGRTGSGKSTLGLSLLRVVHLTSGSITIDGLDISQIHLHRLRTS  1324
             L+NVS   NPGE + +VG  G+GKSTL   +  ++  T G+I +DG D++      LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1325  VTLIPQEPVLFSG-DVQSNL-------DPFGEASETELHSALSACTSIQVHGGPAGEAGT  1376
             +  + Q+P LF    V+ NL              +     AL              + G 
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALE-------------KLG-  106

Query  1377  NKPTTRALTLDTPIAANGENFSQGQRQVLSIARAVCRRSKVVLLDEATA  1425
                       D P+       S GQRQ ++IARA+  + K++LLDE TA
Sbjct  107   -----LGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 100 bits (252),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 74/149 (50%), Gaps = 18/149 (12%)

Query  653  LHDISVSFKQSALNVVAGPTGSGKTSLLLSLLGETVLESGTATC-------------PQD  699
            L ++S++     +  + GP G+GK++LL  + G      GT                 ++
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  700  VAYVPQSPWLQND-TIRQNIIFYSSFDEARYNTVIEASGLIQDLQQLPAGDL--TLVGER  756
            + YV Q P L    T+R+N+           +   + +   + L++L  GDL    VGER
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKG--LSKREKDARAEEALEKLGLGDLADRPVGER  118

Query  757  GTSLSGGQKQRVSLARALYSRSSTLLLDD  785
              +LSGGQ+QRV++ARAL ++   LLLD+
Sbjct  119  PGTLSGGQRQRVAIARALLTKPKLLLLDE  147


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 96.2 bits (240),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 99/276 (36%), Gaps = 13/276 (5%)

Query  932   MLATVTVQFAYFSITYWLSIWTSAYEKYDHPNSLFYLAVYAAAIVSFLLLQITNNLLYQH  991
             +L  +       +    L            P +   L VY+ A++   L Q   + L  +
Sbjct  5     ILLAILSGAISPAFPLVLGRILDVLLPDGDPET-QALNVYSLALLLLGLAQFILSFLQSY  63

Query  992   -GSWTAAK---KMHRKLVEAVLSAPISWFDENPIGRAINRFGNDTRSMDTVLIDWLRMSI  1047
               + T  +   ++ RKL + +L  P+S+FD N +G  ++R  NDT  +   L + L +  
Sbjct  64    LLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGEKLGLLF  123

Query  1048  ENGLRFLLRIASIASIMPIFGLPAAVVCTIGFLIGEMYTRAQISIKRLCSINYSPIFSHF  1107
             ++    +  I  +        L    V  +  L+  ++ +    + R      +   S  
Sbjct  124   QSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVA  183

Query  1108  TDSLAGMTVIRAREGMTGVFQRLLAEKLAVHARSAEAQYNCNRWVSVRSDLCAASVAASA  1167
              +SL+G+  ++A  G          + L    ++   +   N      +        A A
Sbjct  184   EESLSGIRTVKAF-GREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALA  242

Query  1168  GCVAYFWSGSAGLVGFSLTNAIGLSQTILTLVRTMN  1203
                   W G+  ++   L+  +G     L+L   + 
Sbjct  243   -----LWFGAYLVISGELS--VGDLVAFLSLFAQLF  271


 Score = 65.0 bits (159),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 100/307 (33%), Gaps = 46/307 (15%)

Query  304  IKGMVCWAAATSVADFFAPFSMLRLLAYL----EDPTGAVVHPALWISLLFIGPMMRSFC  359
            I  ++  A  +       P  + R+L  L    +  T A+   +L + LL +    +   
Sbjct  2    ILAILL-AILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGL---AQFIL  57

Query  360  YQQYIFTATRLLVRVNISLVQDIYHKAMRSYIYDDSVHSHGRPHPQESARHKAHTPKRTS  419
                 +       R++  L + ++ K +R                Q  +           
Sbjct  58   SFLQSYLLNHTGERLSRRLRRKLFKKILR----------------QPMSFF--------D  93

Query  420  KTNQANVTSLMSYDVDAI-----YNSRDIF-YVATAVPISTTIAMVFLYRMLGWP-SLFG  472
              +   + S ++ D   I          +F  +AT V     I ++F Y   GW  +L  
Sbjct  94   TNSVGELLSRLTNDTSKIRDGLGEKLGLLFQSLATIV---GGIIVMFYY---GWKLTLVL  147

Query  473  VLTLCCLTPLPALASRRVSRIQQSVMRATDIRLARISEYLNSIRTLKFFGWEPAAVASIN  532
            +  L     + A+ ++ + ++ +   +A     +   E L+ IRT+K FG E   +   +
Sbjct  148  LAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYD  207

Query  533  EIRNVEQRRLWRRSVFAAAISMAGDLLPMMSLLVMFSVVVFFTDR-PLRAPVAFTSLSIM  591
            +      +   +++V           +  +S  +      +      L        LS+ 
Sbjct  208  KALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVAFLSLF  267

Query  592  ETLRSQF  598
              L    
Sbjct  268  AQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1939098698


Query= TCONS_00002979

Length=1528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  120     6e-32
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  96.2    4e-22


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 120 bits (303),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 52/169 (31%), Positives = 76/169 (45%), Gaps = 27/169 (16%)

Query  1265  LRNVSFVANPGERIGIVGRTGSGKSTLGLSLLRVVHLTSGSITIDGLDISQIHLHRLRTS  1324
             L+NVS   NPGE + +VG  G+GKSTL   +  ++  T G+I +DG D++      LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1325  VTLIPQEPVLFSG-DVQSNL-------DPFGEASETELHSALSACTSIQVHGGPAGEAGT  1376
             +  + Q+P LF    V+ NL              +     AL              + G 
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALE-------------KLG-  106

Query  1377  NKPTTRALTLDTPIAANGENFSQGQRQVLSIARAVCRRSKVVLLDEATA  1425
                       D P+       S GQRQ ++IARA+  + K++LLDE TA
Sbjct  107   -----LGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 100 bits (252),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 74/149 (50%), Gaps = 18/149 (12%)

Query  653  LHDISVSFKQSALNVVAGPTGSGKTSLLLSLLGETVLESGTATC-------------PQD  699
            L ++S++     +  + GP G+GK++LL  + G      GT                 ++
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  700  VAYVPQSPWLQND-TIRQNIIFYSSFDEARYNTVIEASGLIQDLQQLPAGDL--TLVGER  756
            + YV Q P L    T+R+N+           +   + +   + L++L  GDL    VGER
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKG--LSKREKDARAEEALEKLGLGDLADRPVGER  118

Query  757  GTSLSGGQKQRVSLARALYSRSSTLLLDD  785
              +LSGGQ+QRV++ARAL ++   LLLD+
Sbjct  119  PGTLSGGQRQRVAIARALLTKPKLLLLDE  147


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 96.2 bits (240),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 99/276 (36%), Gaps = 13/276 (5%)

Query  932   MLATVTVQFAYFSITYWLSIWTSAYEKYDHPNSLFYLAVYAAAIVSFLLLQITNNLLYQH  991
             +L  +       +    L            P +   L VY+ A++   L Q   + L  +
Sbjct  5     ILLAILSGAISPAFPLVLGRILDVLLPDGDPET-QALNVYSLALLLLGLAQFILSFLQSY  63

Query  992   -GSWTAAK---KMHRKLVEAVLSAPISWFDENPIGRAINRFGNDTRSMDTVLIDWLRMSI  1047
               + T  +   ++ RKL + +L  P+S+FD N +G  ++R  NDT  +   L + L +  
Sbjct  64    LLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGEKLGLLF  123

Query  1048  ENGLRFLLRIASIASIMPIFGLPAAVVCTIGFLIGEMYTRAQISIKRLCSINYSPIFSHF  1107
             ++    +  I  +        L    V  +  L+  ++ +    + R      +   S  
Sbjct  124   QSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVA  183

Query  1108  TDSLAGMTVIRAREGMTGVFQRLLAEKLAVHARSAEAQYNCNRWVSVRSDLCAASVAASA  1167
              +SL+G+  ++A  G          + L    ++   +   N      +        A A
Sbjct  184   EESLSGIRTVKAF-GREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALA  242

Query  1168  GCVAYFWSGSAGLVGFSLTNAIGLSQTILTLVRTMN  1203
                   W G+  ++   L+  +G     L+L   + 
Sbjct  243   -----LWFGAYLVISGELS--VGDLVAFLSLFAQLF  271


 Score = 65.0 bits (159),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 100/307 (33%), Gaps = 46/307 (15%)

Query  304  IKGMVCWAAATSVADFFAPFSMLRLLAYL----EDPTGAVVHPALWISLLFIGPMMRSFC  359
            I  ++  A  +       P  + R+L  L    +  T A+   +L + LL +    +   
Sbjct  2    ILAILL-AILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGL---AQFIL  57

Query  360  YQQYIFTATRLLVRVNISLVQDIYHKAMRSYIYDDSVHSHGRPHPQESARHKAHTPKRTS  419
                 +       R++  L + ++ K +R                Q  +           
Sbjct  58   SFLQSYLLNHTGERLSRRLRRKLFKKILR----------------QPMSFF--------D  93

Query  420  KTNQANVTSLMSYDVDAI-----YNSRDIF-YVATAVPISTTIAMVFLYRMLGWP-SLFG  472
              +   + S ++ D   I          +F  +AT V     I ++F Y   GW  +L  
Sbjct  94   TNSVGELLSRLTNDTSKIRDGLGEKLGLLFQSLATIV---GGIIVMFYY---GWKLTLVL  147

Query  473  VLTLCCLTPLPALASRRVSRIQQSVMRATDIRLARISEYLNSIRTLKFFGWEPAAVASIN  532
            +  L     + A+ ++ + ++ +   +A     +   E L+ IRT+K FG E   +   +
Sbjct  148  LAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYD  207

Query  533  EIRNVEQRRLWRRSVFAAAISMAGDLLPMMSLLVMFSVVVFFTDR-PLRAPVAFTSLSIM  591
            +      +   +++V           +  +S  +      +      L        LS+ 
Sbjct  208  KALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVAFLSLF  267

Query  592  ETLRSQF  598
              L    
Sbjct  268  AQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1939098698


Query= TCONS_00002978

Length=1528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  120     6e-32
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  96.2    4e-22


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 120 bits (303),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 52/169 (31%), Positives = 76/169 (45%), Gaps = 27/169 (16%)

Query  1265  LRNVSFVANPGERIGIVGRTGSGKSTLGLSLLRVVHLTSGSITIDGLDISQIHLHRLRTS  1324
             L+NVS   NPGE + +VG  G+GKSTL   +  ++  T G+I +DG D++      LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1325  VTLIPQEPVLFSG-DVQSNL-------DPFGEASETELHSALSACTSIQVHGGPAGEAGT  1376
             +  + Q+P LF    V+ NL              +     AL              + G 
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALE-------------KLG-  106

Query  1377  NKPTTRALTLDTPIAANGENFSQGQRQVLSIARAVCRRSKVVLLDEATA  1425
                       D P+       S GQRQ ++IARA+  + K++LLDE TA
Sbjct  107   -----LGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 100 bits (252),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 74/149 (50%), Gaps = 18/149 (12%)

Query  653  LHDISVSFKQSALNVVAGPTGSGKTSLLLSLLGETVLESGTATC-------------PQD  699
            L ++S++     +  + GP G+GK++LL  + G      GT                 ++
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  700  VAYVPQSPWLQND-TIRQNIIFYSSFDEARYNTVIEASGLIQDLQQLPAGDL--TLVGER  756
            + YV Q P L    T+R+N+           +   + +   + L++L  GDL    VGER
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKG--LSKREKDARAEEALEKLGLGDLADRPVGER  118

Query  757  GTSLSGGQKQRVSLARALYSRSSTLLLDD  785
              +LSGGQ+QRV++ARAL ++   LLLD+
Sbjct  119  PGTLSGGQRQRVAIARALLTKPKLLLLDE  147


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 96.2 bits (240),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 99/276 (36%), Gaps = 13/276 (5%)

Query  932   MLATVTVQFAYFSITYWLSIWTSAYEKYDHPNSLFYLAVYAAAIVSFLLLQITNNLLYQH  991
             +L  +       +    L            P +   L VY+ A++   L Q   + L  +
Sbjct  5     ILLAILSGAISPAFPLVLGRILDVLLPDGDPET-QALNVYSLALLLLGLAQFILSFLQSY  63

Query  992   -GSWTAAK---KMHRKLVEAVLSAPISWFDENPIGRAINRFGNDTRSMDTVLIDWLRMSI  1047
               + T  +   ++ RKL + +L  P+S+FD N +G  ++R  NDT  +   L + L +  
Sbjct  64    LLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGEKLGLLF  123

Query  1048  ENGLRFLLRIASIASIMPIFGLPAAVVCTIGFLIGEMYTRAQISIKRLCSINYSPIFSHF  1107
             ++    +  I  +        L    V  +  L+  ++ +    + R      +   S  
Sbjct  124   QSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVA  183

Query  1108  TDSLAGMTVIRAREGMTGVFQRLLAEKLAVHARSAEAQYNCNRWVSVRSDLCAASVAASA  1167
              +SL+G+  ++A  G          + L    ++   +   N      +        A A
Sbjct  184   EESLSGIRTVKAF-GREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALA  242

Query  1168  GCVAYFWSGSAGLVGFSLTNAIGLSQTILTLVRTMN  1203
                   W G+  ++   L+  +G     L+L   + 
Sbjct  243   -----LWFGAYLVISGELS--VGDLVAFLSLFAQLF  271


 Score = 65.0 bits (159),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 100/307 (33%), Gaps = 46/307 (15%)

Query  304  IKGMVCWAAATSVADFFAPFSMLRLLAYL----EDPTGAVVHPALWISLLFIGPMMRSFC  359
            I  ++  A  +       P  + R+L  L    +  T A+   +L + LL +    +   
Sbjct  2    ILAILL-AILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGL---AQFIL  57

Query  360  YQQYIFTATRLLVRVNISLVQDIYHKAMRSYIYDDSVHSHGRPHPQESARHKAHTPKRTS  419
                 +       R++  L + ++ K +R                Q  +           
Sbjct  58   SFLQSYLLNHTGERLSRRLRRKLFKKILR----------------QPMSFF--------D  93

Query  420  KTNQANVTSLMSYDVDAI-----YNSRDIF-YVATAVPISTTIAMVFLYRMLGWP-SLFG  472
              +   + S ++ D   I          +F  +AT V     I ++F Y   GW  +L  
Sbjct  94   TNSVGELLSRLTNDTSKIRDGLGEKLGLLFQSLATIV---GGIIVMFYY---GWKLTLVL  147

Query  473  VLTLCCLTPLPALASRRVSRIQQSVMRATDIRLARISEYLNSIRTLKFFGWEPAAVASIN  532
            +  L     + A+ ++ + ++ +   +A     +   E L+ IRT+K FG E   +   +
Sbjct  148  LAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYD  207

Query  533  EIRNVEQRRLWRRSVFAAAISMAGDLLPMMSLLVMFSVVVFFTDR-PLRAPVAFTSLSIM  591
            +      +   +++V           +  +S  +      +      L        LS+ 
Sbjct  208  KALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVAFLSLF  267

Query  592  ETLRSQF  598
              L    
Sbjct  268  AQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1939098698


Query= TCONS_00008061

Length=1528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  120     6e-32
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  96.2    4e-22


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 120 bits (303),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 52/169 (31%), Positives = 76/169 (45%), Gaps = 27/169 (16%)

Query  1265  LRNVSFVANPGERIGIVGRTGSGKSTLGLSLLRVVHLTSGSITIDGLDISQIHLHRLRTS  1324
             L+NVS   NPGE + +VG  G+GKSTL   +  ++  T G+I +DG D++      LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1325  VTLIPQEPVLFSG-DVQSNL-------DPFGEASETELHSALSACTSIQVHGGPAGEAGT  1376
             +  + Q+P LF    V+ NL              +     AL              + G 
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALE-------------KLG-  106

Query  1377  NKPTTRALTLDTPIAANGENFSQGQRQVLSIARAVCRRSKVVLLDEATA  1425
                       D P+       S GQRQ ++IARA+  + K++LLDE TA
Sbjct  107   -----LGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 100 bits (252),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 74/149 (50%), Gaps = 18/149 (12%)

Query  653  LHDISVSFKQSALNVVAGPTGSGKTSLLLSLLGETVLESGTATC-------------PQD  699
            L ++S++     +  + GP G+GK++LL  + G      GT                 ++
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  700  VAYVPQSPWLQND-TIRQNIIFYSSFDEARYNTVIEASGLIQDLQQLPAGDL--TLVGER  756
            + YV Q P L    T+R+N+           +   + +   + L++L  GDL    VGER
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKG--LSKREKDARAEEALEKLGLGDLADRPVGER  118

Query  757  GTSLSGGQKQRVSLARALYSRSSTLLLDD  785
              +LSGGQ+QRV++ARAL ++   LLLD+
Sbjct  119  PGTLSGGQRQRVAIARALLTKPKLLLLDE  147


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 96.2 bits (240),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 99/276 (36%), Gaps = 13/276 (5%)

Query  932   MLATVTVQFAYFSITYWLSIWTSAYEKYDHPNSLFYLAVYAAAIVSFLLLQITNNLLYQH  991
             +L  +       +    L            P +   L VY+ A++   L Q   + L  +
Sbjct  5     ILLAILSGAISPAFPLVLGRILDVLLPDGDPET-QALNVYSLALLLLGLAQFILSFLQSY  63

Query  992   -GSWTAAK---KMHRKLVEAVLSAPISWFDENPIGRAINRFGNDTRSMDTVLIDWLRMSI  1047
               + T  +   ++ RKL + +L  P+S+FD N +G  ++R  NDT  +   L + L +  
Sbjct  64    LLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGEKLGLLF  123

Query  1048  ENGLRFLLRIASIASIMPIFGLPAAVVCTIGFLIGEMYTRAQISIKRLCSINYSPIFSHF  1107
             ++    +  I  +        L    V  +  L+  ++ +    + R      +   S  
Sbjct  124   QSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVA  183

Query  1108  TDSLAGMTVIRAREGMTGVFQRLLAEKLAVHARSAEAQYNCNRWVSVRSDLCAASVAASA  1167
              +SL+G+  ++A  G          + L    ++   +   N      +        A A
Sbjct  184   EESLSGIRTVKAF-GREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALA  242

Query  1168  GCVAYFWSGSAGLVGFSLTNAIGLSQTILTLVRTMN  1203
                   W G+  ++   L+  +G     L+L   + 
Sbjct  243   -----LWFGAYLVISGELS--VGDLVAFLSLFAQLF  271


 Score = 65.0 bits (159),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 100/307 (33%), Gaps = 46/307 (15%)

Query  304  IKGMVCWAAATSVADFFAPFSMLRLLAYL----EDPTGAVVHPALWISLLFIGPMMRSFC  359
            I  ++  A  +       P  + R+L  L    +  T A+   +L + LL +    +   
Sbjct  2    ILAILL-AILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGL---AQFIL  57

Query  360  YQQYIFTATRLLVRVNISLVQDIYHKAMRSYIYDDSVHSHGRPHPQESARHKAHTPKRTS  419
                 +       R++  L + ++ K +R                Q  +           
Sbjct  58   SFLQSYLLNHTGERLSRRLRRKLFKKILR----------------QPMSFF--------D  93

Query  420  KTNQANVTSLMSYDVDAI-----YNSRDIF-YVATAVPISTTIAMVFLYRMLGWP-SLFG  472
              +   + S ++ D   I          +F  +AT V     I ++F Y   GW  +L  
Sbjct  94   TNSVGELLSRLTNDTSKIRDGLGEKLGLLFQSLATIV---GGIIVMFYY---GWKLTLVL  147

Query  473  VLTLCCLTPLPALASRRVSRIQQSVMRATDIRLARISEYLNSIRTLKFFGWEPAAVASIN  532
            +  L     + A+ ++ + ++ +   +A     +   E L+ IRT+K FG E   +   +
Sbjct  148  LAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYD  207

Query  533  EIRNVEQRRLWRRSVFAAAISMAGDLLPMMSLLVMFSVVVFFTDR-PLRAPVAFTSLSIM  591
            +      +   +++V           +  +S  +      +      L        LS+ 
Sbjct  208  KALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVAFLSLF  267

Query  592  ETLRSQF  598
              L    
Sbjct  268  AQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1939098698


Query= TCONS_00008062

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  119     4e-32
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  95.0    3e-22


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 119 bits (300),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 52/169 (31%), Positives = 76/169 (45%), Gaps = 27/169 (16%)

Query  362  LRNVSFVANPGERIGIVGRTGSGKSTLGLSLLRVVHLTSGSITIDGLDISQIHLHRLRTS  421
            L+NVS   NPGE + +VG  G+GKSTL   +  ++  T G+I +DG D++      LR  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  422  VTLIPQEPVLFSG-DVQSNL-------DPFGEASETELHSALSACTSIQVHGGPAGEAGT  473
            +  + Q+P LF    V+ NL              +     AL              + G 
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALE-------------KLG-  106

Query  474  NKPTTRALTLDTPIAANGENFSQGQRQVLSIARAVCRRSKVVLLDEATA  522
                      D P+       S GQRQ ++IARA+  + K++LLDE TA
Sbjct  107  -----LGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 95.0 bits (237),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 99/276 (36%), Gaps = 13/276 (5%)

Query  29   MLATVTVQFAYFSITYWLSIWTSAYEKYDHPNSLFYLAVYAAAIVSFLLLQITNNLLYQH  88
            +L  +       +    L            P +   L VY+ A++   L Q   + L  +
Sbjct  5    ILLAILSGAISPAFPLVLGRILDVLLPDGDPET-QALNVYSLALLLLGLAQFILSFLQSY  63

Query  89   -GSWTAAK---KMHRKLVEAVLSAPISWFDENPIGRAINRFGNDTRSMDTVLIDWLRMSI  144
              + T  +   ++ RKL + +L  P+S+FD N +G  ++R  NDT  +   L + L +  
Sbjct  64   LLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGEKLGLLF  123

Query  145  ENGLRFLLRIASIASIMPIFGLPAAVVCTIGFLIGEMYTRAQISIKRLCSINYSPIFSHF  204
            ++    +  I  +        L    V  +  L+  ++ +    + R      +   S  
Sbjct  124  QSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVA  183

Query  205  TDSLAGMTVIRAREGMTGVFQRLLAEKLAVHARSAEAQYNCNRWVSVRSDLCAASVAASA  264
             +SL+G+  ++A  G          + L    ++   +   N      +        A A
Sbjct  184  EESLSGIRTVKAF-GREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALA  242

Query  265  GCVAYFWSGSAGLVGFSLTNAIGLSQTILTLVRTMN  300
                  W G+  ++   L+  +G     L+L   + 
Sbjct  243  -----LWFGAYLVISGELS--VGDLVAFLSLFAQLF  271



Lambda      K        H        a         alpha
   0.322    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784588280


Query= TCONS_00008063

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00002982

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395092 pfam00144, Beta-lactamase, Beta-lactamase. This family...  130     8e-36


>CDD:395092 pfam00144, Beta-lactamase, Beta-lactamase.  This family appears 
to be distantly related to pfam00905 and pfam00768 D-alanyl-D-alanine 
carboxypeptidase.
Length=327

 Score = 130 bits (329),  Expect = 8e-36, Method: Composition-based stats.
 Identities = 64/281 (23%), Positives = 99/281 (35%), Gaps = 45/281 (16%)

Query  11   GSLHYAKAFGEASVESTE---TDAVHWVASCTKLVTTVAVMQCVERGLLDLDEDIANVLP  67
            G +   +  G A +E       D +  +AS TK  T  AV+Q VERG LDLD+ ++  LP
Sbjct  25   GKVVVDRGGGVADLEGGRPVTADTLFRIASVTKTFTAAAVLQLVERGKLDLDDPVSKYLP  84

Query  68   EWDSPRILTGFDEDDNPSFWPATKPVTLRRMLTHSSGMAYFFMDPLMTRYHDLQGKPPLL  127
            E+                  P    +TLR +LTH+SG+   F    +    +       L
Sbjct  85   EFAG----------------PGKGGITLRDLLTHTSGLPPLFAPDDLE---EAAADAAEL  125

Query  128  QTLFQFQFLLFEPGERWMYS-PGIDWAGKAAQWDDNVRYEKVERVTSMRLSEYLQRHVFD  186
                     ++ PG RW YS       G+            +ERVT     E L   +  
Sbjct  126  VRALAALPPVWPPGTRWGYSNTAYGLLGEL-----------LERVTGQSYEELLGDRILR  174

Query  187  VVSVKDATFHLDQREDLRARKVKAWVRTDQGLEEEKNPVFQDPIAEEFGGGGLYTTVNEM  246
             + + D    + +  D R     A   T +G                   GGL +T  ++
Sbjct  175  PLGMTDTELGVPEPGDPRD----AAGYTGEG----PPVRVPPGPLPAGAYGGLKSTARDL  226

Query  247  LKICHGILTGKLLRPETVREMFQPQL---ESVLGLDQPHSY  284
             +    +L G LL    + ++          V G+      
Sbjct  227  ARFLLALLGGLLLSAAALAQLTDWLRGGTTGVGGIRAGLGL  267



Lambda      K        H        a         alpha
   0.321    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00002981

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395092 pfam00144, Beta-lactamase, Beta-lactamase. This family...  137     4e-38


>CDD:395092 pfam00144, Beta-lactamase, Beta-lactamase.  This family appears 
to be distantly related to pfam00905 and pfam00768 D-alanyl-D-alanine 
carboxypeptidase.
Length=327

 Score = 137 bits (347),  Expect = 4e-38, Method: Composition-based stats.
 Identities = 68/286 (24%), Positives = 104/286 (36%), Gaps = 45/286 (16%)

Query  29   AVSRDGSLHYAKAFGEASVESTE---TDAVHWVASCTKLVTTVAVMQCVERGLLDLDEDI  85
            AV+RDG +   +  G A +E       D +  +AS TK  T  AV+Q VERG LDLD+ +
Sbjct  20   AVTRDGKVVVDRGGGVADLEGGRPVTADTLFRIASVTKTFTAAAVLQLVERGKLDLDDPV  79

Query  86   ANVLPEWDSPRILTGFDEDDNPSFWPATKPVTLRRMLTHSSGMAYFFMDPLMTRYHDLQG  145
            +  LPE+                  P    +TLR +LTH+SG+   F    +    +   
Sbjct  80   SKYLPEFAG----------------PGKGGITLRDLLTHTSGLPPLFAPDDLE---EAAA  120

Query  146  KPPLLQTLFQFQFLLFEPGERWMYS-PGIDWAGKAAQWDDNVRYEKVERVTSMRLSEYLQ  204
                L         ++ PG RW YS       G+            +ERVT     E L 
Sbjct  121  DAAELVRALAALPPVWPPGTRWGYSNTAYGLLGEL-----------LERVTGQSYEELLG  169

Query  205  RHVFDVVSVKDATFHLDQREDLRARKVKAWVRTDQGLEEEKNPVFQDPIAEEFGGGGLYT  264
              +   + + D    + +  D R     A   T +G                   GGL +
Sbjct  170  DRILRPLGMTDTELGVPEPGDPRD----AAGYTGEG----PPVRVPPGPLPAGAYGGLKS  221

Query  265  TVNEMLKICHGILTGKLLRPETVREMFQPQL---ESVLGLDQPHSY  307
            T  ++ +    +L G LL    + ++          V G+      
Sbjct  222  TARDLARFLLALLGGLLLSAAALAQLTDWLRGGTTGVGGIRAGLGL  267



Lambda      K        H        a         alpha
   0.320    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00002983

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  89.0    2e-20


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 89.0 bits (221),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 128/333 (38%), Gaps = 42/333 (13%)

Query  23   ALDERGKAIACLRREMDQIHRAPYAHFLTIMLLALMQIADSDPKDYGRQHLSGARALINR  82
            AL    +A+A L   +   +         I+LL   +I+  D  D+ R HL GA+ LI R
Sbjct  70   ALRLLQRALAELSSRLSS-NSKYDDVLAAILLLCSFEISSGDVSDW-RVHLEGAKDLI-R  126

Query  83   MLRDVSMSTTTNESVFRLCLGLYLYWD-MCSSFLVEPAEPEGLNSFDISLAVLRMGDWHH  141
            +    S +++   S+ R  L  + Y D + S+              D+    L +G    
Sbjct  127  LRGGPSKTSSGLSSLLRFLLRNFAYHDILSSTTTGRGPSFPSEEYLDLFGDELELGSSGL  186

Query  142  -PMYATCSRLLLIIANVGRYCRQV--------YDMPQSRNHVQEAMLEALLSTW------  186
             P+    + L L+I+ +    R+             +  +  QE  LE  LS+W      
Sbjct  187  DPLMGCSNSLFLLISEISDLAREKRSLRSDNELLPLEFLSRAQE--LEQRLSSWEPRSDD  244

Query  187  ------TADSPDSDLRHLYEAFRNHGLVFLHQSRAHAQRRCPMNPSVTEEQGSLILRYAE  240
                    D     L  L E +R   L++L+       RR    P  + E   L+ +   
Sbjct  245  LEIPLDGEDPLSELLLTLTELYRLAALIYLY-------RRILGLPPSSPEVQELVSK---  294

Query  241  ATVRHLLRIPASSYTLNFQSLSLLIAGSELTKSDHILRDEVRGRLRVIYSFNRLPANLMA  300
              +  L  +P S   ++     L IAG E    D   RD V  RL  +   +RL     A
Sbjct  295  -LLELLDLLPDSPLAISSLLWPLFIAGCEAVDDDD--RDFVLDRLDSLEK-SRLGNVRRA  350

Query  301  LQFLEELWDARDSGNPSF-WLSYMMQKDWRLLL  332
             + LEE+W  RD G  S  W   M +  W LLL
Sbjct  351  REILEEVWKRRDDGELSIDWRDVMERLGWDLLL  383



Lambda      K        H        a         alpha
   0.325    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00002984

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            95.2    7e-22
CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TR...  75.5    9e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 95.2 bits (237),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 88/405 (22%), Positives = 146/405 (36%), Gaps = 69/405 (17%)

Query  70   LVLAVILVSLDMTIVATAIPR-ITDEFK----QVGWYASAFFLTIASFQSTWGKGYKYFP  124
            L LA  L +L  +++  A+P  + ++      ++G   + F L  A  Q   G+    F 
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  125  LKTTFLGAISTFEIGSLICAVAQNSTTLLVGRAVAGMGAAGIASGAYTIIAFSAPPRQRP  184
             +   L  +  F +G L+   A +   LLV R + G+GA  +   A  +IA   PP +R 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  185  AFTGLLGATYGLASVIGPLLGGVFTDKVSWRWCFYINLPIGGLSAVIILFLFRAPPASQP  244
               GL+ A +GL + +GPLLGG+      WR  F I   +  L+AV++L     P + +P
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRP  180

Query  245  AKASWREKFLQMDLLGTFTIMAAVVCYLLALQWAGVTKAWSSADVIGTSVSFLVIVVLFV  304
              A                                +  AW +                  
Sbjct  181  KPA--------------------------EEARLSLIVAWKA------------------  196

Query  305  VIELWMGERALFQPRLLKQRNIWANNLYVFFLAG-AMYTLIYYLPIYFQSIKSASAAQSG  363
                           LL+   +W   L    L G A + L+ YLP+Y Q +   SA  +G
Sbjct  197  ---------------LLRDPVLWL--LLALLLFGFAFFGLLTYLPLY-QEVLGLSALLAG  238

Query  364  IRNLPLILAISRLTIFSGGLITATGHFGSLMVIGSALATVGSGLICTLDIDTGSGEWIGY  423
            +      L  +   +  G L    G    L++    L     GL+      +     +  
Sbjct  239  LLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL  298

Query  424  QIVAGVGLGLALQIPVIVNQALVTPSDLSSISAVTLFMQTLGRPI  468
             ++ G G GL       +   L    +  + S +     +LG  +
Sbjct  299  -LLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL  342


>CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12).  
This family consists of several fungal specific trichothecene 
efflux pump proteins. Many of the genes involved in trichothecene 
toxin biosynthesis in Fusarium sporotrichioides are 
present within a gene cluster.It has been suggested that TRI12 
may play a role in F. sporotrichioides self-protection against 
trichothecenes.
Length=598

 Score = 75.5 bits (185),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 93/380 (24%), Positives = 164/380 (43%), Gaps = 41/380 (11%)

Query  119  GYKYFPLKTTFLGAISTFEIGSLICAVAQNSTTLLVGRAVAGMGAAGIASGAYTIIAFSA  178
            G + F + T  +G +     G+++   A    TLL    + G+ AAG A  +   I    
Sbjct  106  GRRPFVIATHIIGLV-----GAIVGCTANKFNTLLAAMTLLGV-AAGPAGASPLFIGELM  159

Query  179  PPRQRPAFTGLL--GATYGLASVIGPLLGGVFTDKVSWRWCFYINLPIGGLSAVIILFLF  236
              + +  F GLL   A     +  GP  G     + +WRW FYI + +  ++ ++I+  +
Sbjct  160  SNKTK--FLGLLIVSAPTIAMNGAGPYFGQRLAIQGNWRWIFYIYIIMSAIAVLLIIIWY  217

Query  237  RAPPASQ--PAKASWREKFLQMDLLGTFTIMAAVVCYLLALQWAGV-TKAWSSADVIGTS  293
              P  +Q    KA  R++  ++D +G F ++A    +LL + W G     W+SA +IG  
Sbjct  218  HPPSFAQLHGKKARKRDELAKLDWIGIFLVIAGTSLFLLGVSWGGKPNNPWNSAKIIGLI  277

Query  294  VSFLVIVVLFVVIELW-MGERALFQPRLLKQRNIWANNLYVFFLAGAMY---TLIY---Y  346
             S    +V+F + E++   E+ +  P L K    +   L +  + GAM+   T+IY    
Sbjct  278  SSGAGSLVIFALYEVFGKPEQPIIPPALFKDTRGFVCILIISSIMGAMHLCLTIIYPQQV  337

Query  347  LPIYFQSIKS-------ASAAQSGIRNLPLILAISRLTIFSGGLITATGHFGSLMVIGSA  399
            + I+  S+K+       ++ A  G     +IL         G L     H    +++G+ 
Sbjct  338  INIFGSSLKNWEETAWMSATASFGTGAGVMIL---------GNLFHLIRHIRWQILVGAL  388

Query  400  LATVGSGLICTLDIDTGSGEWIGYQIVAGVGLGLALQIPVIVNQALVTPSDLSSISAVTL  459
              T   G + +++ D  +   I     +G  +  A  I +++ Q + T  DL    AV  
Sbjct  389  WLTAFLGAMSSINRDNKNAA-IALSFFSGFVVAWAQDITMLLVQFITTDEDLGVAFAVV-  446

Query  460  FMQTLGRPICVSAAQAAFVN  479
                  RP   S   AAF++
Sbjct  447  ---AAARPFAGSIFTAAFIS  463



Lambda      K        H        a         alpha
   0.323    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00002985

Length=856
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  122     1e-32
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  80.3    1e-18


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 122 bits (308),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 102/248 (41%), Gaps = 84/248 (34%)

Query  276  AVQSTVIPLLLQGLRRHPGDLCISAATGSGKTLSYVLPLVTALKPTPAPRMRGLIVVPTR  335
             +Q+  IP +L+G      D+ + A TGSGKTL+++LP + AL        + L++ PTR
Sbjct  2    PIQAEAIPAILEG-----RDVLVQAPTGSGKTLAFLLPALEALDKLD-NGPQALVLAPTR  55

Query  336  ELVKQAREACELCATGSGLRIGSAVGNVAIKDEQRTLMRVDQCYGPELSKQRQTVDLTGE  395
            EL +Q  E  +    G GL++ S +G  + K++   L                       
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK----------------------  93

Query  396  DWTNFSLMNYLAEAGELSEPLPGYVQRAEPNIDILICTPGRLVDHLRYTKGFTLEHLQWL  455
                                            DIL+ TPGRL+D L+  K   L++L+ L
Sbjct  94   ------------------------------GPDILVGTPGRLLDLLQERK--LLKNLKLL  121

Query  456  VIDEADRLLNESFQEWVDVVMNSLDARKAPKTFGSSGKFMAELGLPIQSREPRKVILSAT  515
            V+DEA RLL+  F   ++ ++  L                          + + ++LSAT
Sbjct  122  VLDEAHRLLDMGFGPDLEEILRRLPK------------------------KRQILLLSAT  157

Query  516  MTRDISKL  523
            + R++  L
Sbjct  158  LPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 80.3 bits (199),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 36/98 (37%), Positives = 56/98 (57%), Gaps = 7/98 (7%)

Query  692  VLIFTKSSESASRLSRLISLLDPSLADRVGTIIKSNKSSASR-KTLTAYRRGKISIIVAT  750
            VLIF+++ ++         LL      +V   +  + S   R + L  +R+GKI ++VAT
Sbjct  18   VLIFSQTKKTLE-----AELLLEKEGIKV-ARLHGDLSQEEREEILEDFRKGKIDVLVAT  71

Query  751  DRASRGLDLVSLTHVVNYDVPPSVTTYVHRVGRTARAG  788
            D A RGLDL  +  V+NYD+P +  +Y+ R+GR  RAG
Sbjct  72   DVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.307    0.124    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1092426154


Query= TCONS_00002986

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400541 pfam08288, PIGA, PIGA (GPI anchor biosynthesis). This ...  186     1e-58
CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1  105     1e-27
CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases grou...  105     3e-27
CDD:463877 pfam13439, Glyco_transf_4, Glycosyltransferase Family 4    90.7    6e-22


>CDD:400541 pfam08288, PIGA, PIGA (GPI anchor biosynthesis).  This domain 
is found on phosphatidylinositol n-acetylglucosaminyltransferase 
proteins. These proteins are involved in GPI anchor biosynthesis 
and are associated with disease the paroxysmal nocturnal 
haemoglobinuria.
Length=90

 Score = 186 bits (475),  Expect = 1e-58, Method: Composition-based stats.
 Identities = 72/90 (80%), Positives = 81/90 (90%), Gaps = 0/90 (0%)

Query  42   HAYKGRTGVRYLTNGLKVYHIPFFVIYRESTMPTVFSFFPLFRNIVIREQVQIVHGHGSM  101
            HAY  RTGVRYLTNGLKVY++PF VIYR+ST PTVF  FPLFRNI++RE++ IVHGHGS 
Sbjct  1    HAYGDRTGVRYLTNGLKVYYVPFLVIYRQSTFPTVFGTFPLFRNILLRERIDIVHGHGSF  60

Query  102  SSLCHEAILHARTMGLRTVFTDHSLFGFAD  131
            S+L HEAILHARTMGL+TVFTDHSLFGFAD
Sbjct  61   STLAHEAILHARTMGLKTVFTDHSLFGFAD  90


>CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.  
Length=138

 Score = 105 bits (265),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 40/115 (35%), Positives = 68/115 (59%), Gaps = 6/115 (5%)

Query  218  TIVVISRLFYN-KGTDLLIAVIPRILASHPNVRFIVAGSGPQAIDLEQMLERNVLQDKVE  276
             I+ + RL  N KG D L+  +P +     +VR ++ G GP+  +LE++     L+D+V 
Sbjct  3    VILFVGRLHPNVKGVDYLLEAVPLLRKRDNDVRLVIVGDGPEE-ELEELAAG--LEDRVI  59

Query  277  LLGSIRHEEVRDVMVRGHIYLHPSLTEAFGTVIVEAASCGLYVVCTRVGGIPEVL  331
              G +  E++ +++    +++ PSL E FG  ++EA + GL VV T VGGIPE++
Sbjct  60   FTGFV--EDLAELLAAADVFVLPSLYEGFGLKLLEAMAAGLPVVATDVGGIPELV  112


>CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.  Mutations 
in this domain of PIGA lead to disease (Paroxysmal 
Nocturnal haemoglobinuria). Members of this family transfer 
activated sugars to a variety of substrates, including glycogen, 
Fructose-6-phosphate and lipopolysaccharides. Members of 
this family transfer UDP, ADP, GDP or CMP linked sugars. The 
eukaryotic glycogen synthases may be distant members of this 
family.
Length=158

 Score = 105 bits (264),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 3/152 (2%)

Query  215  DTITIVVISRLFYNKGTDLLIAVIPRILASHPNVRFIVAGSGPQAIDLE-QMLERNVLQD  273
                I+ + RL   KG DLLI     +   +PN++ ++AG G +   L+    +   L D
Sbjct  1    KKKIILFVGRLEPEKGLDLLIKAFALLKEKNPNLKLVIAGDGEEEKRLKKLAEKLG-LGD  59

Query  274  KVELLGSIRHEEVRDVMVRGHIYLHPSLTEAFGTVIVEAASCGLYVVCTRVGGIPEVLPQ  333
             V  LG +  E++ +++    +++ PS  E FG V++EA +CGL V+ + VGG PEV+  
Sbjct  60   NVIFLGFVSDEDLPELLKIADVFVLPSRYEGFGIVLLEAMACGLPVIASDVGGPPEVVKD  119

Query  334  HMTTFAKPEEDDLVLATEKAIAALRSNKVRTD  365
              T F     +   LA E     L   ++R  
Sbjct  120  GETGFLVKPNNAEALA-EAIDKLLEDEELRER  150


>CDD:463877 pfam13439, Glyco_transf_4, Glycosyltransferase Family 4.  
Length=169

 Score = 90.7 bits (225),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 41/171 (24%), Positives = 66/171 (39%), Gaps = 12/171 (7%)

Query  17   GGVESHIYQLSTKLIDRGHKVIIITHAYKGRTGVRYLTNGLKVYHIPFFVIYRESTMPTV  76
            GGVE ++ +L+  L  RGH+V ++T    G      +     V  +P   +     +   
Sbjct  1    GGVERYVLELARALARRGHEVTVVTPGGPGPLAEEVVR----VVRVPRVPLPLPPRLLRS  56

Query  77   FSFFPLFRNIVIREQVQIVHGHGSMSSLCHEAILHARTMGLRTVFTDHSLF-------GF  129
             +F    R ++ RE+  +VH H         A+     +G+  V T H LF         
Sbjct  57   LAFLRRLRRLLRRERPDVVHAHSPFPLGL-AALAARLRLGIPLVVTYHGLFPDYKRLGAR  115

Query  130  ADAGSILANKMLKFTLSDVDHVICVSHTCKENTVLRASLDPLMVSVIPNAV  180
                  L  ++ +  L   D VI VS    +       + P  + VIPN V
Sbjct  116  LSPLRRLLRRLERRLLRRADRVIAVSEAVADELRRLYGVPPEKIRVIPNGV  166



Lambda      K        H        a         alpha
   0.324    0.139    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0694    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00002987

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400541 pfam08288, PIGA, PIGA (GPI anchor biosynthesis). This ...  127     9e-37
CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1  105     8e-28
CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases grou...  105     1e-27
CDD:463877 pfam13439, Glyco_transf_4, Glycosyltransferase Family 4    60.6    2e-11


>CDD:400541 pfam08288, PIGA, PIGA (GPI anchor biosynthesis).  This domain 
is found on phosphatidylinositol n-acetylglucosaminyltransferase 
proteins. These proteins are involved in GPI anchor biosynthesis 
and are associated with disease the paroxysmal nocturnal 
haemoglobinuria.
Length=90

 Score = 127 bits (322),  Expect = 9e-37, Method: Composition-based stats.
 Identities = 47/58 (81%), Positives = 53/58 (91%), Gaps = 0/58 (0%)

Query  2   PTVFSFFPLFRNIVIREQVQIVHGHGSMSSLCHEAILHARTMGLRTVFTDHSLFGFAD  59
           PTVF  FPLFRNI++RE++ IVHGHGS S+L HEAILHARTMGL+TVFTDHSLFGFAD
Sbjct  33  PTVFGTFPLFRNILLRERIDIVHGHGSFSTLAHEAILHARTMGLKTVFTDHSLFGFAD  90


>CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.  
Length=138

 Score = 105 bits (264),  Expect = 8e-28, Method: Composition-based stats.
 Identities = 40/115 (35%), Positives = 68/115 (59%), Gaps = 6/115 (5%)

Query  146  TIVVISRLFYN-KGTDLLIAVIPRILASHPNVRFIVAGSGPQAIDLEQMLERNVLQDKVE  204
             I+ + RL  N KG D L+  +P +     +VR ++ G GP+  +LE++     L+D+V 
Sbjct  3    VILFVGRLHPNVKGVDYLLEAVPLLRKRDNDVRLVIVGDGPEE-ELEELAAG--LEDRVI  59

Query  205  LLGSIRHEEVRDVMVRGHIYLHPSLTEAFGTVIVEAASCGLYVVCTRVGGIPEVL  259
              G +  E++ +++    +++ PSL E FG  ++EA + GL VV T VGGIPE++
Sbjct  60   FTGFV--EDLAELLAAADVFVLPSLYEGFGLKLLEAMAAGLPVVATDVGGIPELV  112


>CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.  Mutations 
in this domain of PIGA lead to disease (Paroxysmal 
Nocturnal haemoglobinuria). Members of this family transfer 
activated sugars to a variety of substrates, including glycogen, 
Fructose-6-phosphate and lipopolysaccharides. Members of 
this family transfer UDP, ADP, GDP or CMP linked sugars. The 
eukaryotic glycogen synthases may be distant members of this 
family.
Length=158

 Score = 105 bits (264),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 3/152 (2%)

Query  143  DTITIVVISRLFYNKGTDLLIAVIPRILASHPNVRFIVAGSGPQAIDLE-QMLERNVLQD  201
                I+ + RL   KG DLLI     +   +PN++ ++AG G +   L+    +   L D
Sbjct  1    KKKIILFVGRLEPEKGLDLLIKAFALLKEKNPNLKLVIAGDGEEEKRLKKLAEKLG-LGD  59

Query  202  KVELLGSIRHEEVRDVMVRGHIYLHPSLTEAFGTVIVEAASCGLYVVCTRVGGIPEVLPQ  261
             V  LG +  E++ +++    +++ PS  E FG V++EA +CGL V+ + VGG PEV+  
Sbjct  60   NVIFLGFVSDEDLPELLKIADVFVLPSRYEGFGIVLLEAMACGLPVIASDVGGPPEVVKD  119

Query  262  HMTTFAKPEEDDLVLATEKAIAALRSNKVRTD  293
              T F     +   LA E     L   ++R  
Sbjct  120  GETGFLVKPNNAEALA-EAIDKLLEDEELRER  150


>CDD:463877 pfam13439, Glyco_transf_4, Glycosyltransferase Family 4.  
Length=169

 Score = 60.6 bits (147),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 41/111 (37%), Gaps = 8/111 (7%)

Query  5    FSFFPLFRNIVIREQVQIVHGHGSMSSLCHEAILHARTMGLRTVFTDHSLF-------GF  57
             +F    R ++ RE+  +VH H         A+     +G+  V T H LF         
Sbjct  57   LAFLRRLRRLLRRERPDVVHAHSPFPLGL-AALAARLRLGIPLVVTYHGLFPDYKRLGAR  115

Query  58   ADAGSILANKMLKFTLSDVDHVICVSHTCKENTVLRASLDPLMVSVIPNAV  108
                  L  ++ +  L   D VI VS    +       + P  + VIPN V
Sbjct  116  LSPLRRLLRRLERRLLRRADRVIAVSEAVADELRRLYGVPPEKIRVIPNGV  166



Lambda      K        H        a         alpha
   0.324    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00008064

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400541 pfam08288, PIGA, PIGA (GPI anchor biosynthesis). This ...  186     1e-58
CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1  105     1e-27
CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases grou...  105     3e-27
CDD:463877 pfam13439, Glyco_transf_4, Glycosyltransferase Family 4    90.7    6e-22


>CDD:400541 pfam08288, PIGA, PIGA (GPI anchor biosynthesis).  This domain 
is found on phosphatidylinositol n-acetylglucosaminyltransferase 
proteins. These proteins are involved in GPI anchor biosynthesis 
and are associated with disease the paroxysmal nocturnal 
haemoglobinuria.
Length=90

 Score = 186 bits (475),  Expect = 1e-58, Method: Composition-based stats.
 Identities = 72/90 (80%), Positives = 81/90 (90%), Gaps = 0/90 (0%)

Query  42   HAYKGRTGVRYLTNGLKVYHIPFFVIYRESTMPTVFSFFPLFRNIVIREQVQIVHGHGSM  101
            HAY  RTGVRYLTNGLKVY++PF VIYR+ST PTVF  FPLFRNI++RE++ IVHGHGS 
Sbjct  1    HAYGDRTGVRYLTNGLKVYYVPFLVIYRQSTFPTVFGTFPLFRNILLRERIDIVHGHGSF  60

Query  102  SSLCHEAILHARTMGLRTVFTDHSLFGFAD  131
            S+L HEAILHARTMGL+TVFTDHSLFGFAD
Sbjct  61   STLAHEAILHARTMGLKTVFTDHSLFGFAD  90


>CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.  
Length=138

 Score = 105 bits (265),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 40/115 (35%), Positives = 68/115 (59%), Gaps = 6/115 (5%)

Query  218  TIVVISRLFYN-KGTDLLIAVIPRILASHPNVRFIVAGSGPQAIDLEQMLERNVLQDKVE  276
             I+ + RL  N KG D L+  +P +     +VR ++ G GP+  +LE++     L+D+V 
Sbjct  3    VILFVGRLHPNVKGVDYLLEAVPLLRKRDNDVRLVIVGDGPEE-ELEELAAG--LEDRVI  59

Query  277  LLGSIRHEEVRDVMVRGHIYLHPSLTEAFGTVIVEAASCGLYVVCTRVGGIPEVL  331
              G +  E++ +++    +++ PSL E FG  ++EA + GL VV T VGGIPE++
Sbjct  60   FTGFV--EDLAELLAAADVFVLPSLYEGFGLKLLEAMAAGLPVVATDVGGIPELV  112


>CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.  Mutations 
in this domain of PIGA lead to disease (Paroxysmal 
Nocturnal haemoglobinuria). Members of this family transfer 
activated sugars to a variety of substrates, including glycogen, 
Fructose-6-phosphate and lipopolysaccharides. Members of 
this family transfer UDP, ADP, GDP or CMP linked sugars. The 
eukaryotic glycogen synthases may be distant members of this 
family.
Length=158

 Score = 105 bits (264),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 3/152 (2%)

Query  215  DTITIVVISRLFYNKGTDLLIAVIPRILASHPNVRFIVAGSGPQAIDLE-QMLERNVLQD  273
                I+ + RL   KG DLLI     +   +PN++ ++AG G +   L+    +   L D
Sbjct  1    KKKIILFVGRLEPEKGLDLLIKAFALLKEKNPNLKLVIAGDGEEEKRLKKLAEKLG-LGD  59

Query  274  KVELLGSIRHEEVRDVMVRGHIYLHPSLTEAFGTVIVEAASCGLYVVCTRVGGIPEVLPQ  333
             V  LG +  E++ +++    +++ PS  E FG V++EA +CGL V+ + VGG PEV+  
Sbjct  60   NVIFLGFVSDEDLPELLKIADVFVLPSRYEGFGIVLLEAMACGLPVIASDVGGPPEVVKD  119

Query  334  HMTTFAKPEEDDLVLATEKAIAALRSNKVRTD  365
              T F     +   LA E     L   ++R  
Sbjct  120  GETGFLVKPNNAEALA-EAIDKLLEDEELRER  150


>CDD:463877 pfam13439, Glyco_transf_4, Glycosyltransferase Family 4.  
Length=169

 Score = 90.7 bits (225),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 41/171 (24%), Positives = 66/171 (39%), Gaps = 12/171 (7%)

Query  17   GGVESHIYQLSTKLIDRGHKVIIITHAYKGRTGVRYLTNGLKVYHIPFFVIYRESTMPTV  76
            GGVE ++ +L+  L  RGH+V ++T    G      +     V  +P   +     +   
Sbjct  1    GGVERYVLELARALARRGHEVTVVTPGGPGPLAEEVVR----VVRVPRVPLPLPPRLLRS  56

Query  77   FSFFPLFRNIVIREQVQIVHGHGSMSSLCHEAILHARTMGLRTVFTDHSLF-------GF  129
             +F    R ++ RE+  +VH H         A+     +G+  V T H LF         
Sbjct  57   LAFLRRLRRLLRRERPDVVHAHSPFPLGL-AALAARLRLGIPLVVTYHGLFPDYKRLGAR  115

Query  130  ADAGSILANKMLKFTLSDVDHVICVSHTCKENTVLRASLDPLMVSVIPNAV  180
                  L  ++ +  L   D VI VS    +       + P  + VIPN V
Sbjct  116  LSPLRRLLRRLERRLLRRADRVIAVSEAVADELRRLYGVPPEKIRVIPNGV  166



Lambda      K        H        a         alpha
   0.324    0.139    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00008065

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400541 pfam08288, PIGA, PIGA (GPI anchor biosynthesis). This ...  127     9e-37
CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1  105     8e-28
CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases grou...  105     1e-27
CDD:463877 pfam13439, Glyco_transf_4, Glycosyltransferase Family 4    60.6    2e-11


>CDD:400541 pfam08288, PIGA, PIGA (GPI anchor biosynthesis).  This domain 
is found on phosphatidylinositol n-acetylglucosaminyltransferase 
proteins. These proteins are involved in GPI anchor biosynthesis 
and are associated with disease the paroxysmal nocturnal 
haemoglobinuria.
Length=90

 Score = 127 bits (322),  Expect = 9e-37, Method: Composition-based stats.
 Identities = 47/58 (81%), Positives = 53/58 (91%), Gaps = 0/58 (0%)

Query  2   PTVFSFFPLFRNIVIREQVQIVHGHGSMSSLCHEAILHARTMGLRTVFTDHSLFGFAD  59
           PTVF  FPLFRNI++RE++ IVHGHGS S+L HEAILHARTMGL+TVFTDHSLFGFAD
Sbjct  33  PTVFGTFPLFRNILLRERIDIVHGHGSFSTLAHEAILHARTMGLKTVFTDHSLFGFAD  90


>CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.  
Length=138

 Score = 105 bits (264),  Expect = 8e-28, Method: Composition-based stats.
 Identities = 40/115 (35%), Positives = 68/115 (59%), Gaps = 6/115 (5%)

Query  146  TIVVISRLFYN-KGTDLLIAVIPRILASHPNVRFIVAGSGPQAIDLEQMLERNVLQDKVE  204
             I+ + RL  N KG D L+  +P +     +VR ++ G GP+  +LE++     L+D+V 
Sbjct  3    VILFVGRLHPNVKGVDYLLEAVPLLRKRDNDVRLVIVGDGPEE-ELEELAAG--LEDRVI  59

Query  205  LLGSIRHEEVRDVMVRGHIYLHPSLTEAFGTVIVEAASCGLYVVCTRVGGIPEVL  259
              G +  E++ +++    +++ PSL E FG  ++EA + GL VV T VGGIPE++
Sbjct  60   FTGFV--EDLAELLAAADVFVLPSLYEGFGLKLLEAMAAGLPVVATDVGGIPELV  112


>CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.  Mutations 
in this domain of PIGA lead to disease (Paroxysmal 
Nocturnal haemoglobinuria). Members of this family transfer 
activated sugars to a variety of substrates, including glycogen, 
Fructose-6-phosphate and lipopolysaccharides. Members of 
this family transfer UDP, ADP, GDP or CMP linked sugars. The 
eukaryotic glycogen synthases may be distant members of this 
family.
Length=158

 Score = 105 bits (264),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 3/152 (2%)

Query  143  DTITIVVISRLFYNKGTDLLIAVIPRILASHPNVRFIVAGSGPQAIDLE-QMLERNVLQD  201
                I+ + RL   KG DLLI     +   +PN++ ++AG G +   L+    +   L D
Sbjct  1    KKKIILFVGRLEPEKGLDLLIKAFALLKEKNPNLKLVIAGDGEEEKRLKKLAEKLG-LGD  59

Query  202  KVELLGSIRHEEVRDVMVRGHIYLHPSLTEAFGTVIVEAASCGLYVVCTRVGGIPEVLPQ  261
             V  LG +  E++ +++    +++ PS  E FG V++EA +CGL V+ + VGG PEV+  
Sbjct  60   NVIFLGFVSDEDLPELLKIADVFVLPSRYEGFGIVLLEAMACGLPVIASDVGGPPEVVKD  119

Query  262  HMTTFAKPEEDDLVLATEKAIAALRSNKVRTD  293
              T F     +   LA E     L   ++R  
Sbjct  120  GETGFLVKPNNAEALA-EAIDKLLEDEELRER  150


>CDD:463877 pfam13439, Glyco_transf_4, Glycosyltransferase Family 4.  
Length=169

 Score = 60.6 bits (147),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 41/111 (37%), Gaps = 8/111 (7%)

Query  5    FSFFPLFRNIVIREQVQIVHGHGSMSSLCHEAILHARTMGLRTVFTDHSLF-------GF  57
             +F    R ++ RE+  +VH H         A+     +G+  V T H LF         
Sbjct  57   LAFLRRLRRLLRRERPDVVHAHSPFPLGL-AALAARLRLGIPLVVTYHGLFPDYKRLGAR  115

Query  58   ADAGSILANKMLKFTLSDVDHVICVSHTCKENTVLRASLDPLMVSVIPNAV  108
                  L  ++ +  L   D VI VS    +       + P  + VIPN V
Sbjct  116  LSPLRRLLRRLERRLLRRADRVIAVSEAVADELRRLYGVPPEKIRVIPNGV  166



Lambda      K        H        a         alpha
   0.324    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00002988

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1  105     1e-28
CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases grou...  105     4e-28


>CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.  
Length=138

 Score = 105 bits (265),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 40/115 (35%), Positives = 68/115 (59%), Gaps = 6/115 (5%)

Query  44   TIVVISRLFYN-KGTDLLIAVIPRILASHPNVRFIVAGSGPQAIDLEQMLERNVLQDKVE  102
             I+ + RL  N KG D L+  +P +     +VR ++ G GP+  +LE++     L+D+V 
Sbjct  3    VILFVGRLHPNVKGVDYLLEAVPLLRKRDNDVRLVIVGDGPEE-ELEELAAG--LEDRVI  59

Query  103  LLGSIRHEEVRDVMVRGHIYLHPSLTEAFGTVIVEAASCGLYVVCTRVGGIPEVL  157
              G +  E++ +++    +++ PSL E FG  ++EA + GL VV T VGGIPE++
Sbjct  60   FTGFV--EDLAELLAAADVFVLPSLYEGFGLKLLEAMAAGLPVVATDVGGIPELV  112


>CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.  Mutations 
in this domain of PIGA lead to disease (Paroxysmal 
Nocturnal haemoglobinuria). Members of this family transfer 
activated sugars to a variety of substrates, including glycogen, 
Fructose-6-phosphate and lipopolysaccharides. Members of 
this family transfer UDP, ADP, GDP or CMP linked sugars. The 
eukaryotic glycogen synthases may be distant members of this 
family.
Length=158

 Score = 105 bits (263),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 3/152 (2%)

Query  41   DTITIVVISRLFYNKGTDLLIAVIPRILASHPNVRFIVAGSGPQAIDLE-QMLERNVLQD  99
                I+ + RL   KG DLLI     +   +PN++ ++AG G +   L+    +   L D
Sbjct  1    KKKIILFVGRLEPEKGLDLLIKAFALLKEKNPNLKLVIAGDGEEEKRLKKLAEKLG-LGD  59

Query  100  KVELLGSIRHEEVRDVMVRGHIYLHPSLTEAFGTVIVEAASCGLYVVCTRVGGIPEVLPQ  159
             V  LG +  E++ +++    +++ PS  E FG V++EA +CGL V+ + VGG PEV+  
Sbjct  60   NVIFLGFVSDEDLPELLKIADVFVLPSRYEGFGIVLLEAMACGLPVIASDVGGPPEVVKD  119

Query  160  HMTTFAKPEEDDLVLATEKAIAALRSNKVRTD  191
              T F     +   LA E     L   ++R  
Sbjct  120  GETGFLVKPNNAEALA-EAIDKLLEDEELRER  150



Lambda      K        H        a         alpha
   0.322    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00008066

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400541 pfam08288, PIGA, PIGA (GPI anchor biosynthesis). This ...  127     9e-37
CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1  105     8e-28
CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases grou...  105     1e-27
CDD:463877 pfam13439, Glyco_transf_4, Glycosyltransferase Family 4    60.6    2e-11


>CDD:400541 pfam08288, PIGA, PIGA (GPI anchor biosynthesis).  This domain 
is found on phosphatidylinositol n-acetylglucosaminyltransferase 
proteins. These proteins are involved in GPI anchor biosynthesis 
and are associated with disease the paroxysmal nocturnal 
haemoglobinuria.
Length=90

 Score = 127 bits (322),  Expect = 9e-37, Method: Composition-based stats.
 Identities = 47/58 (81%), Positives = 53/58 (91%), Gaps = 0/58 (0%)

Query  2   PTVFSFFPLFRNIVIREQVQIVHGHGSMSSLCHEAILHARTMGLRTVFTDHSLFGFAD  59
           PTVF  FPLFRNI++RE++ IVHGHGS S+L HEAILHARTMGL+TVFTDHSLFGFAD
Sbjct  33  PTVFGTFPLFRNILLRERIDIVHGHGSFSTLAHEAILHARTMGLKTVFTDHSLFGFAD  90


>CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.  
Length=138

 Score = 105 bits (264),  Expect = 8e-28, Method: Composition-based stats.
 Identities = 40/115 (35%), Positives = 68/115 (59%), Gaps = 6/115 (5%)

Query  146  TIVVISRLFYN-KGTDLLIAVIPRILASHPNVRFIVAGSGPQAIDLEQMLERNVLQDKVE  204
             I+ + RL  N KG D L+  +P +     +VR ++ G GP+  +LE++     L+D+V 
Sbjct  3    VILFVGRLHPNVKGVDYLLEAVPLLRKRDNDVRLVIVGDGPEE-ELEELAAG--LEDRVI  59

Query  205  LLGSIRHEEVRDVMVRGHIYLHPSLTEAFGTVIVEAASCGLYVVCTRVGGIPEVL  259
              G +  E++ +++    +++ PSL E FG  ++EA + GL VV T VGGIPE++
Sbjct  60   FTGFV--EDLAELLAAADVFVLPSLYEGFGLKLLEAMAAGLPVVATDVGGIPELV  112


>CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.  Mutations 
in this domain of PIGA lead to disease (Paroxysmal 
Nocturnal haemoglobinuria). Members of this family transfer 
activated sugars to a variety of substrates, including glycogen, 
Fructose-6-phosphate and lipopolysaccharides. Members of 
this family transfer UDP, ADP, GDP or CMP linked sugars. The 
eukaryotic glycogen synthases may be distant members of this 
family.
Length=158

 Score = 105 bits (264),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 3/152 (2%)

Query  143  DTITIVVISRLFYNKGTDLLIAVIPRILASHPNVRFIVAGSGPQAIDLE-QMLERNVLQD  201
                I+ + RL   KG DLLI     +   +PN++ ++AG G +   L+    +   L D
Sbjct  1    KKKIILFVGRLEPEKGLDLLIKAFALLKEKNPNLKLVIAGDGEEEKRLKKLAEKLG-LGD  59

Query  202  KVELLGSIRHEEVRDVMVRGHIYLHPSLTEAFGTVIVEAASCGLYVVCTRVGGIPEVLPQ  261
             V  LG +  E++ +++    +++ PS  E FG V++EA +CGL V+ + VGG PEV+  
Sbjct  60   NVIFLGFVSDEDLPELLKIADVFVLPSRYEGFGIVLLEAMACGLPVIASDVGGPPEVVKD  119

Query  262  HMTTFAKPEEDDLVLATEKAIAALRSNKVRTD  293
              T F     +   LA E     L   ++R  
Sbjct  120  GETGFLVKPNNAEALA-EAIDKLLEDEELRER  150


>CDD:463877 pfam13439, Glyco_transf_4, Glycosyltransferase Family 4.  
Length=169

 Score = 60.6 bits (147),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 41/111 (37%), Gaps = 8/111 (7%)

Query  5    FSFFPLFRNIVIREQVQIVHGHGSMSSLCHEAILHARTMGLRTVFTDHSLF-------GF  57
             +F    R ++ RE+  +VH H         A+     +G+  V T H LF         
Sbjct  57   LAFLRRLRRLLRRERPDVVHAHSPFPLGL-AALAARLRLGIPLVVTYHGLFPDYKRLGAR  115

Query  58   ADAGSILANKMLKFTLSDVDHVICVSHTCKENTVLRASLDPLMVSVIPNAV  108
                  L  ++ +  L   D VI VS    +       + P  + VIPN V
Sbjct  116  LSPLRRLLRRLERRLLRRADRVIAVSEAVADELRRLYGVPPEKIRVIPNGV  166



Lambda      K        H        a         alpha
   0.324    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00002989

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460720 pfam02840, Prp18, Prp18 domain. The splicing factor Pr...  124     5e-36


>CDD:460720 pfam02840, Prp18, Prp18 domain.  The splicing factor Prp18 is 
required for the second step of pre-mRNA splicing. The structure 
of a large fragment of the Saccharomyces cerevisiae Prp18 
is known. This fragment is fully active in yeast splicing 
in vitro and includes the sequences of Prp18 that have been 
evolutionarily conserved. The core structure consists of five 
alpha-helices that adopt a novel fold. The most highly conserved 
region of Prp18, a nearly invariant stretch of 19 aa, 
forms part of a loop between two alpha-helices and may interact 
with the U5 small nuclear ribonucleoprotein particles.
Length=142

 Score = 124 bits (315),  Expect = 5e-36, Method: Composition-based stats.
 Identities = 38/89 (43%), Positives = 55/89 (62%), Gaps = 0/89 (0%)

Query  221  ASYFNMVLLEWERALARRDASVKQSLTGRQAYNAMVQSRENLKPLFRKFEKNDIDDNLLE  280
              +   +L EWE+ L  R    K+S  G+ A     Q++E LKPLFRK +K  + D++L+
Sbjct  1    LVFLKFLLKEWEQELNARPEEEKRSAQGKLASATFKQTKEYLKPLFRKLKKKTLPDDILD  60

Query  281  PIMEIVHKAQLRRYVDANDAYLRVSIGKA  309
             + EIV+  Q R YV ANDAYL+++IG A
Sbjct  61   SLAEIVYHLQEREYVKANDAYLKLAIGNA  89



Lambda      K        H        a         alpha
   0.312    0.128    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00002991

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  246     9e-81
CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  209     8e-68


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 246 bits (631),  Expect = 9e-81, Method: Composition-based stats.
 Identities = 96/317 (30%), Positives = 140/317 (44%), Gaps = 12/317 (4%)

Query  14   LFLDSSLEKDYASF--CEIVYHSFALSSETVSLAKGSDAVCAFVNDTLDAPVLKSLHRYG  71
            L LD    +        E+  H   L+ E +  AK +DA+       + A VL++  +  
Sbjct  2    LILDPLSPEALELLKEGEVEVHDELLTEELLEKAKDADALIVRSRTKVTAEVLEAAPK--  59

Query  72   IRAILLRCAGFNNVDLQVAEELGFFVANVPSYSPEAVAEFAVALIQTLNRKTHRAYNRVR  131
            ++ I     G +NVDL  A E G  V N P Y+ E+VAE  + LI  L R+   A   VR
Sbjct  60   LKVIGRAGVGVDNVDLDAATERGILVTNAPGYNTESVAELTIGLILALARRIPEADASVR  119

Query  132  EGNFNLEGFLGHTLHGKTVGIVGVGRIGLALAKIFHGFGCRLLASDPFGGEEFRKYGEFV  191
            EG +   G +G  L+GKT+G++G G IG  +A I   FG  ++A DP+   E  + G   
Sbjct  120  EGKWKKSGLIGLELYGKTLGVIGGGGIGGGVAAIAKAFGMGVVAYDPYPNPERAEAGGVE  179

Query  192  ELSELLAQSDVVSLHCPLTESTRHIINDETLAQMRKGALLVNTSRGGLINTKAAIRALKE  251
             LS LL   D           +  ++    L  M+ G +++N +RG L +  A I A   
Sbjct  180  VLSLLLLLLD--------LPESDDVLTVNPLTTMKTGVIIINEARGMLKDAVAIINAAGG  231

Query  252  GHLGGLALDVYEGEGSLFYNDHSTEIIHDDTLMRLMTFPNVLVCGHQAFFTQEALCEIAG  311
            G +   ALD    EG     D   E         L+  PNV++  H    T+EA   IA 
Sbjct  232  GVIDEAALDALLEEGIAAAADLDVEEEPPPVDSPLLDLPNVILTPHIGGATEEAQERIAE  291

Query  312  VTLGNLQDFVLKRTCKN  328
                N+  F+      N
Sbjct  292  EAAENILAFLDGGPPAN  308


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 209 bits (534),  Expect = 8e-68, Method: Composition-based stats.
 Identities = 86/191 (45%), Positives = 112/191 (59%), Gaps = 17/191 (9%)

Query  113  VALIQTLNRKTHRAYNRVREGNFNLE-GFLGHTLHGKTVGIVGVGRIGLALAKIFHGFGC  171
            +AL+  L R+   A  +VR G +      LG  L GKTVGI+G+GRIG A+AK    FG 
Sbjct  1    LALLLALARRIPEADRQVRAGRWASPDALLGRELSGKTVGIIGLGRIGRAVAKRLKAFGM  60

Query  172  RLLASDPFG---GEEFRKYGEFVELSELLAQSDVVSLHCPLTESTRHIINDETLAQMRKG  228
            +++A D +     EE      +V L ELLA+SDVVSLH PLT  TRH+IN E LA M+ G
Sbjct  61   KVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPG  120

Query  229  ALLVNTSRGGLINTKAAIRALKEGHLGGLALDVYEGEGSLFYNDHSTEIIHDDTLMRLMT  288
            A+L+NT+RGGL++  A I ALK G + G ALDV+E E      DH            L+ 
Sbjct  121  AILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEP--LPADH-----------PLLD  167

Query  289  FPNVLVCGHQA  299
             PNV++  H A
Sbjct  168  LPNVILTPHIA  178



Lambda      K        H        a         alpha
   0.323    0.139    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00002990

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  246     9e-81
CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  209     8e-68


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 246 bits (631),  Expect = 9e-81, Method: Composition-based stats.
 Identities = 96/317 (30%), Positives = 140/317 (44%), Gaps = 12/317 (4%)

Query  14   LFLDSSLEKDYASF--CEIVYHSFALSSETVSLAKGSDAVCAFVNDTLDAPVLKSLHRYG  71
            L LD    +        E+  H   L+ E +  AK +DA+       + A VL++  +  
Sbjct  2    LILDPLSPEALELLKEGEVEVHDELLTEELLEKAKDADALIVRSRTKVTAEVLEAAPK--  59

Query  72   IRAILLRCAGFNNVDLQVAEELGFFVANVPSYSPEAVAEFAVALIQTLNRKTHRAYNRVR  131
            ++ I     G +NVDL  A E G  V N P Y+ E+VAE  + LI  L R+   A   VR
Sbjct  60   LKVIGRAGVGVDNVDLDAATERGILVTNAPGYNTESVAELTIGLILALARRIPEADASVR  119

Query  132  EGNFNLEGFLGHTLHGKTVGIVGVGRIGLALAKIFHGFGCRLLASDPFGGEEFRKYGEFV  191
            EG +   G +G  L+GKT+G++G G IG  +A I   FG  ++A DP+   E  + G   
Sbjct  120  EGKWKKSGLIGLELYGKTLGVIGGGGIGGGVAAIAKAFGMGVVAYDPYPNPERAEAGGVE  179

Query  192  ELSELLAQSDVVSLHCPLTESTRHIINDETLAQMRKGALLVNTSRGGLINTKAAIRALKE  251
             LS LL   D           +  ++    L  M+ G +++N +RG L +  A I A   
Sbjct  180  VLSLLLLLLD--------LPESDDVLTVNPLTTMKTGVIIINEARGMLKDAVAIINAAGG  231

Query  252  GHLGGLALDVYEGEGSLFYNDHSTEIIHDDTLMRLMTFPNVLVCGHQAFFTQEALCEIAG  311
            G +   ALD    EG     D   E         L+  PNV++  H    T+EA   IA 
Sbjct  232  GVIDEAALDALLEEGIAAAADLDVEEEPPPVDSPLLDLPNVILTPHIGGATEEAQERIAE  291

Query  312  VTLGNLQDFVLKRTCKN  328
                N+  F+      N
Sbjct  292  EAAENILAFLDGGPPAN  308


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 209 bits (534),  Expect = 8e-68, Method: Composition-based stats.
 Identities = 86/191 (45%), Positives = 112/191 (59%), Gaps = 17/191 (9%)

Query  113  VALIQTLNRKTHRAYNRVREGNFNLE-GFLGHTLHGKTVGIVGVGRIGLALAKIFHGFGC  171
            +AL+  L R+   A  +VR G +      LG  L GKTVGI+G+GRIG A+AK    FG 
Sbjct  1    LALLLALARRIPEADRQVRAGRWASPDALLGRELSGKTVGIIGLGRIGRAVAKRLKAFGM  60

Query  172  RLLASDPFG---GEEFRKYGEFVELSELLAQSDVVSLHCPLTESTRHIINDETLAQMRKG  228
            +++A D +     EE      +V L ELLA+SDVVSLH PLT  TRH+IN E LA M+ G
Sbjct  61   KVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPG  120

Query  229  ALLVNTSRGGLINTKAAIRALKEGHLGGLALDVYEGEGSLFYNDHSTEIIHDDTLMRLMT  288
            A+L+NT+RGGL++  A I ALK G + G ALDV+E E      DH            L+ 
Sbjct  121  AILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEP--LPADH-----------PLLD  167

Query  289  FPNVLVCGHQA  299
             PNV++  H A
Sbjct  168  LPNVILTPHIA  178



Lambda      K        H        a         alpha
   0.323    0.139    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00002992

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  246     9e-81
CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  209     8e-68


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 246 bits (631),  Expect = 9e-81, Method: Composition-based stats.
 Identities = 96/317 (30%), Positives = 140/317 (44%), Gaps = 12/317 (4%)

Query  14   LFLDSSLEKDYASF--CEIVYHSFALSSETVSLAKGSDAVCAFVNDTLDAPVLKSLHRYG  71
            L LD    +        E+  H   L+ E +  AK +DA+       + A VL++  +  
Sbjct  2    LILDPLSPEALELLKEGEVEVHDELLTEELLEKAKDADALIVRSRTKVTAEVLEAAPK--  59

Query  72   IRAILLRCAGFNNVDLQVAEELGFFVANVPSYSPEAVAEFAVALIQTLNRKTHRAYNRVR  131
            ++ I     G +NVDL  A E G  V N P Y+ E+VAE  + LI  L R+   A   VR
Sbjct  60   LKVIGRAGVGVDNVDLDAATERGILVTNAPGYNTESVAELTIGLILALARRIPEADASVR  119

Query  132  EGNFNLEGFLGHTLHGKTVGIVGVGRIGLALAKIFHGFGCRLLASDPFGGEEFRKYGEFV  191
            EG +   G +G  L+GKT+G++G G IG  +A I   FG  ++A DP+   E  + G   
Sbjct  120  EGKWKKSGLIGLELYGKTLGVIGGGGIGGGVAAIAKAFGMGVVAYDPYPNPERAEAGGVE  179

Query  192  ELSELLAQSDVVSLHCPLTESTRHIINDETLAQMRKGALLVNTSRGGLINTKAAIRALKE  251
             LS LL   D           +  ++    L  M+ G +++N +RG L +  A I A   
Sbjct  180  VLSLLLLLLD--------LPESDDVLTVNPLTTMKTGVIIINEARGMLKDAVAIINAAGG  231

Query  252  GHLGGLALDVYEGEGSLFYNDHSTEIIHDDTLMRLMTFPNVLVCGHQAFFTQEALCEIAG  311
            G +   ALD    EG     D   E         L+  PNV++  H    T+EA   IA 
Sbjct  232  GVIDEAALDALLEEGIAAAADLDVEEEPPPVDSPLLDLPNVILTPHIGGATEEAQERIAE  291

Query  312  VTLGNLQDFVLKRTCKN  328
                N+  F+      N
Sbjct  292  EAAENILAFLDGGPPAN  308


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 209 bits (534),  Expect = 8e-68, Method: Composition-based stats.
 Identities = 86/191 (45%), Positives = 112/191 (59%), Gaps = 17/191 (9%)

Query  113  VALIQTLNRKTHRAYNRVREGNFNLE-GFLGHTLHGKTVGIVGVGRIGLALAKIFHGFGC  171
            +AL+  L R+   A  +VR G +      LG  L GKTVGI+G+GRIG A+AK    FG 
Sbjct  1    LALLLALARRIPEADRQVRAGRWASPDALLGRELSGKTVGIIGLGRIGRAVAKRLKAFGM  60

Query  172  RLLASDPFG---GEEFRKYGEFVELSELLAQSDVVSLHCPLTESTRHIINDETLAQMRKG  228
            +++A D +     EE      +V L ELLA+SDVVSLH PLT  TRH+IN E LA M+ G
Sbjct  61   KVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPG  120

Query  229  ALLVNTSRGGLINTKAAIRALKEGHLGGLALDVYEGEGSLFYNDHSTEIIHDDTLMRLMT  288
            A+L+NT+RGGL++  A I ALK G + G ALDV+E E      DH            L+ 
Sbjct  121  AILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEP--LPADH-----------PLLD  167

Query  289  FPNVLVCGHQA  299
             PNV++  H A
Sbjct  168  LPNVILTPHIA  178



Lambda      K        H        a         alpha
   0.323    0.139    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00008068

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00002993

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460698 pfam02798, GST_N, Glutathione S-transferase, N-termina...  56.2    3e-11


>CDD:460698 pfam02798, GST_N, Glutathione S-transferase, N-terminal domain. 
 Function: conjugation of reduced glutathione to a variety 
of targets. Also included in the alignment, but not GSTs: 
S-crystallins from squid (similarity to GST previously noted); 
eukaryotic elongation factors 1-gamma (not known to have 
GST activity and similarity not previously recognized); HSP26 
family of stress-related proteins including auxin-regulated 
proteins in plants and stringent starvation proteins in E. 
coli (not known to have GST activity and similarity not previously 
recognized). The glutathione molecule binds in a cleft 
between the N- and C-terminal domains - the catalytically 
important residues are proposed to reside in the N-terminal 
domain.
Length=76

 Score = 56.2 bits (136),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 38/80 (48%), Gaps = 7/80 (9%)

Query  8   AKITVY-WLEHSRAQRILWLLEELHLTYELKTFKRGADMLAPKELKDIHPLGKSPVIRIE  66
             +T+Y      RA RI WLL E  + YE+     GA      EL  ++PLGK P   +E
Sbjct  1   MVLTLYGIRGSPRAHRIRWLLAEKGVEYEIVPLDFGAGPEKSPELLKLNPLGKVPA--LE  58

Query  67  TPGAPKPLVLAESGVIMEYL  86
             G      L ES  I+EY+
Sbjct  59  DGG----KKLTESRAILEYI  74



Lambda      K        H        a         alpha
   0.320    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00008069

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00008070

Length=277


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00008071

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00008072

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00002994

Length=271


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00008073

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00002995

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00002997

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00002998

Length=277


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00002999

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00003000

Length=273


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00008074

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00008075

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00008076

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00008077

Length=20


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 66022480


Query= TCONS_00008078

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00003001

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00008080

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00008081

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00003002

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00003004

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00003005

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00003006

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00003007

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00003008

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00008083

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00003009

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00003010

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426221 pfam01363, FYVE, FYVE zinc finger. The FYVE zinc finge...  85.5    4e-22


>CDD:426221 pfam01363, FYVE, FYVE zinc finger.  The FYVE zinc finger is named 
after four proteins that it has been found in: Fab1, YOTB/ZK632.12, 
Vac1, and EEA1. The FYVE finger has been shown 
to bind two Zn++ ions. The FYVE finger has eight potential zinc 
coordinating cysteine positions. Many members of this family 
also include two histidines in a motif R+HHC+XCG, where 
+ represents a charged residue and X any residue. We have included 
members which do not conserve these histidine residues 
but are clearly related.
Length=68

 Score = 85.5 bits (212),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 25/72 (35%), Positives = 34/72 (47%), Gaps = 5/72 (7%)

Query  142  HWKADAASPNCDSPTCRSSFGLFLRRHHCRHCGHVFCSSHTPHIVPLDQDARFHPEGVPS  201
             W  D+++  C    C   F  F RRHHCR+CG VFCS+ +   + L           P 
Sbjct  2    VWVPDSSATVC--MICSKPFTFFRRRHHCRNCGRVFCSACSSKKISLLP---ELGSNKPV  56

Query  202  RACDLCWSAYQR  213
            R CD C+   Q+
Sbjct  57   RVCDACYDTLQK  68



Lambda      K        H        a         alpha
   0.312    0.124    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00003011

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426221 pfam01363, FYVE, FYVE zinc finger. The FYVE zinc finge...  85.5    4e-22


>CDD:426221 pfam01363, FYVE, FYVE zinc finger.  The FYVE zinc finger is named 
after four proteins that it has been found in: Fab1, YOTB/ZK632.12, 
Vac1, and EEA1. The FYVE finger has been shown 
to bind two Zn++ ions. The FYVE finger has eight potential zinc 
coordinating cysteine positions. Many members of this family 
also include two histidines in a motif R+HHC+XCG, where 
+ represents a charged residue and X any residue. We have included 
members which do not conserve these histidine residues 
but are clearly related.
Length=68

 Score = 85.5 bits (212),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 25/72 (35%), Positives = 34/72 (47%), Gaps = 5/72 (7%)

Query  142  HWKADAASPNCDSPTCRSSFGLFLRRHHCRHCGHVFCSSHTPHIVPLDQDARFHPEGVPS  201
             W  D+++  C    C   F  F RRHHCR+CG VFCS+ +   + L           P 
Sbjct  2    VWVPDSSATVC--MICSKPFTFFRRRHHCRNCGRVFCSACSSKKISLLP---ELGSNKPV  56

Query  202  RACDLCWSAYQR  213
            R CD C+   Q+
Sbjct  57   RVCDACYDTLQK  68



Lambda      K        H        a         alpha
   0.312    0.124    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0718    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00008084

Length=753
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  204     1e-61
CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  125     4e-34


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 204 bits (521),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 89/229 (39%), Positives = 130/229 (57%), Gaps = 18/229 (8%)

Query  272  MFENGGATTSDDGSIAVL-AGSTWGGGGTVNWSASLQTQGYVRREWASK-GLPFFESHEY  329
            ++E GG+  S +G   +L AGST GGG +VNWSA ++T   V  EWAS+ GL  +   +Y
Sbjct  4    LYEGGGSAGSVNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDY  63

Query  330  QQALDRVCDRMGVSNDHTEHNYSNRVLLDGARKLGYAAQPVPQNTGGSNHYCGYCTMGCH  389
               +D+V   +GV+    E +  N+ LL  A +LGY  + VP+N+ G  HYCG+C +GC 
Sbjct  64   LPYMDKVEGPLGVTTKGIEESPLNQALLKAAEELGYPVEAVPRNSNG-CHYCGFCGLGCP  122

Query  390  SCGKKGPRETFLADAAKAGTTFIEGFRADKIRFKNTKGGRVACGVEGTWTSRDSYLGTAG  449
            +  K+    T+L  A +     + G +A+KI     +GGR A GVE              
Sbjct  123  TGAKQSTARTWLRPALERNLRILTGAKAEKIII-LGRGGR-AVGVE-----------ARD  169

Query  450  PDRTTRKVIINASKVIVSCGTLHSPLLLLRSGL-KNPQ-IGRNLYLHPV  496
                 +++I  A +V+V+ G L++P LLLRSGL KNP  +G+NL LHPV
Sbjct  170  GGGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPHPVGKNLQLHPV  218


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 125 bits (316),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 62/160 (39%), Gaps = 27/160 (17%)

Query  576  RDAGRVYPDPADG----RVRIDYTVSAYDRKHIVEALIATAKIAYISGAREFHTSNREMP  631
            R  GRV    +D      +  +Y     D   +  AL    +I                 
Sbjct  2    RSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRIL-------------AAA  48

Query  632  PFIRPTEASDPNAPEGVTNQAL--QAWIAVLRRKNPVDPERTQYASAHQMGTCRMGSSPR  689
              +   E +    PE            +A +R             S H MGTCRMG+ P 
Sbjct  49   GLVLGVELTPGPVPEVSDAAVTSDDELLAYIRA--------AASTSYHPMGTCRMGADPD  100

Query  690  TSVVDPECQVWGTQGLYVMDASVFPSASGVNPMVTNMAIA  729
             +VVDP+ +V G   L V+DASVFPS+   NP +T  A+A
Sbjct  101  DAVVDPDLRVHGVDNLRVVDASVFPSSPSGNPTLTIYALA  140



Lambda      K        H        a         alpha
   0.317    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 958945168


Query= TCONS_00008085

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426221 pfam01363, FYVE, FYVE zinc finger. The FYVE zinc finge...  85.5    4e-22


>CDD:426221 pfam01363, FYVE, FYVE zinc finger.  The FYVE zinc finger is named 
after four proteins that it has been found in: Fab1, YOTB/ZK632.12, 
Vac1, and EEA1. The FYVE finger has been shown 
to bind two Zn++ ions. The FYVE finger has eight potential zinc 
coordinating cysteine positions. Many members of this family 
also include two histidines in a motif R+HHC+XCG, where 
+ represents a charged residue and X any residue. We have included 
members which do not conserve these histidine residues 
but are clearly related.
Length=68

 Score = 85.5 bits (212),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 25/72 (35%), Positives = 34/72 (47%), Gaps = 5/72 (7%)

Query  142  HWKADAASPNCDSPTCRSSFGLFLRRHHCRHCGHVFCSSHTPHIVPLDQDARFHPEGVPS  201
             W  D+++  C    C   F  F RRHHCR+CG VFCS+ +   + L           P 
Sbjct  2    VWVPDSSATVC--MICSKPFTFFRRRHHCRNCGRVFCSACSSKKISLLP---ELGSNKPV  56

Query  202  RACDLCWSAYQR  213
            R CD C+   Q+
Sbjct  57   RVCDACYDTLQK  68



Lambda      K        H        a         alpha
   0.312    0.124    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00008086

Length=559


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 697897876


Query= TCONS_00003012

Length=311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426221 pfam01363, FYVE, FYVE zinc finger. The FYVE zinc finge...  81.7    2e-20


>CDD:426221 pfam01363, FYVE, FYVE zinc finger.  The FYVE zinc finger is named 
after four proteins that it has been found in: Fab1, YOTB/ZK632.12, 
Vac1, and EEA1. The FYVE finger has been shown 
to bind two Zn++ ions. The FYVE finger has eight potential zinc 
coordinating cysteine positions. Many members of this family 
also include two histidines in a motif R+HHC+XCG, where 
+ represents a charged residue and X any residue. We have included 
members which do not conserve these histidine residues 
but are clearly related.
Length=68

 Score = 81.7 bits (202),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query  167  QADAASPNCDSPTCRSSFGLFLRRHHCRHCGHVFCSSHTPHIVPLDQDARFHPEGVPSRA  226
              D+++  C    C   F  F RRHHCR+CG VFCS+ +   + L           P R 
Sbjct  4    VPDSSATVC--MICSKPFTFFRRRHHCRNCGRVFCSACSSKKISLLP---ELGSNKPVRV  58

Query  227  CDLCWSAYQR  236
            CD C+   Q+
Sbjct  59   CDACYDTLQK  68



Lambda      K        H        a         alpha
   0.311    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00003014

Length=753
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  204     1e-61
CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  125     4e-34


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 204 bits (521),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 89/229 (39%), Positives = 130/229 (57%), Gaps = 18/229 (8%)

Query  272  MFENGGATTSDDGSIAVL-AGSTWGGGGTVNWSASLQTQGYVRREWASK-GLPFFESHEY  329
            ++E GG+  S +G   +L AGST GGG +VNWSA ++T   V  EWAS+ GL  +   +Y
Sbjct  4    LYEGGGSAGSVNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDY  63

Query  330  QQALDRVCDRMGVSNDHTEHNYSNRVLLDGARKLGYAAQPVPQNTGGSNHYCGYCTMGCH  389
               +D+V   +GV+    E +  N+ LL  A +LGY  + VP+N+ G  HYCG+C +GC 
Sbjct  64   LPYMDKVEGPLGVTTKGIEESPLNQALLKAAEELGYPVEAVPRNSNG-CHYCGFCGLGCP  122

Query  390  SCGKKGPRETFLADAAKAGTTFIEGFRADKIRFKNTKGGRVACGVEGTWTSRDSYLGTAG  449
            +  K+    T+L  A +     + G +A+KI     +GGR A GVE              
Sbjct  123  TGAKQSTARTWLRPALERNLRILTGAKAEKIII-LGRGGR-AVGVE-----------ARD  169

Query  450  PDRTTRKVIINASKVIVSCGTLHSPLLLLRSGL-KNPQ-IGRNLYLHPV  496
                 +++I  A +V+V+ G L++P LLLRSGL KNP  +G+NL LHPV
Sbjct  170  GGGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPHPVGKNLQLHPV  218


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 125 bits (316),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 62/160 (39%), Gaps = 27/160 (17%)

Query  576  RDAGRVYPDPADG----RVRIDYTVSAYDRKHIVEALIATAKIAYISGAREFHTSNREMP  631
            R  GRV    +D      +  +Y     D   +  AL    +I                 
Sbjct  2    RSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRIL-------------AAA  48

Query  632  PFIRPTEASDPNAPEGVTNQAL--QAWIAVLRRKNPVDPERTQYASAHQMGTCRMGSSPR  689
              +   E +    PE            +A +R             S H MGTCRMG+ P 
Sbjct  49   GLVLGVELTPGPVPEVSDAAVTSDDELLAYIRA--------AASTSYHPMGTCRMGADPD  100

Query  690  TSVVDPECQVWGTQGLYVMDASVFPSASGVNPMVTNMAIA  729
             +VVDP+ +V G   L V+DASVFPS+   NP +T  A+A
Sbjct  101  DAVVDPDLRVHGVDNLRVVDASVFPSSPSGNPTLTIYALA  140



Lambda      K        H        a         alpha
   0.317    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 958945168


Query= TCONS_00008087

Length=246


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00003015

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  202     6e-63


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 202 bits (516),  Expect = 6e-63, Method: Composition-based stats.
 Identities = 88/228 (39%), Positives = 129/228 (57%), Gaps = 18/228 (8%)

Query  272  MFENGGATTSDDGSIAVL-AGSTWGGGGTVNWSASLQTQGYVRREWASK-GLPFFESHEY  329
            ++E GG+  S +G   +L AGST GGG +VNWSA ++T   V  EWAS+ GL  +   +Y
Sbjct  4    LYEGGGSAGSVNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDY  63

Query  330  QQALDRVCDRMGVSNDHTEHNYSNRVLLDGARKLGYAAQPVPQNTGGSNHYCGYCTMGCH  389
               +D+V   +GV+    E +  N+ LL  A +LGY  + VP+N+ G  HYCG+C +GC 
Sbjct  64   LPYMDKVEGPLGVTTKGIEESPLNQALLKAAEELGYPVEAVPRNSNG-CHYCGFCGLGCP  122

Query  390  SCGKKGPRETFLADAAKAGTTFIEGFRADKIRFKNTKGGRVACGVEGTWTSRDSYLGTAG  449
            +  K+    T+L  A +     + G +A+KI     +GGR A GVE              
Sbjct  123  TGAKQSTARTWLRPALERNLRILTGAKAEKIII-LGRGGR-AVGVE-----------ARD  169

Query  450  PDRTTRKVIINASKVIVSCGTLHSPLLLLRSGL-KNPQ-IGRNLYLHP  495
                 +++I  A +V+V+ G L++P LLLRSGL KNP  +G+NL LHP
Sbjct  170  GGGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPHPVGKNLQLHP  217



Lambda      K        H        a         alpha
   0.317    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00003016

Length=753
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  204     1e-61
CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  125     4e-34


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 204 bits (521),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 89/229 (39%), Positives = 130/229 (57%), Gaps = 18/229 (8%)

Query  272  MFENGGATTSDDGSIAVL-AGSTWGGGGTVNWSASLQTQGYVRREWASK-GLPFFESHEY  329
            ++E GG+  S +G   +L AGST GGG +VNWSA ++T   V  EWAS+ GL  +   +Y
Sbjct  4    LYEGGGSAGSVNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDY  63

Query  330  QQALDRVCDRMGVSNDHTEHNYSNRVLLDGARKLGYAAQPVPQNTGGSNHYCGYCTMGCH  389
               +D+V   +GV+    E +  N+ LL  A +LGY  + VP+N+ G  HYCG+C +GC 
Sbjct  64   LPYMDKVEGPLGVTTKGIEESPLNQALLKAAEELGYPVEAVPRNSNG-CHYCGFCGLGCP  122

Query  390  SCGKKGPRETFLADAAKAGTTFIEGFRADKIRFKNTKGGRVACGVEGTWTSRDSYLGTAG  449
            +  K+    T+L  A +     + G +A+KI     +GGR A GVE              
Sbjct  123  TGAKQSTARTWLRPALERNLRILTGAKAEKIII-LGRGGR-AVGVE-----------ARD  169

Query  450  PDRTTRKVIINASKVIVSCGTLHSPLLLLRSGL-KNPQ-IGRNLYLHPV  496
                 +++I  A +V+V+ G L++P LLLRSGL KNP  +G+NL LHPV
Sbjct  170  GGGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPHPVGKNLQLHPV  218


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 125 bits (316),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 62/160 (39%), Gaps = 27/160 (17%)

Query  576  RDAGRVYPDPADG----RVRIDYTVSAYDRKHIVEALIATAKIAYISGAREFHTSNREMP  631
            R  GRV    +D      +  +Y     D   +  AL    +I                 
Sbjct  2    RSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRIL-------------AAA  48

Query  632  PFIRPTEASDPNAPEGVTNQAL--QAWIAVLRRKNPVDPERTQYASAHQMGTCRMGSSPR  689
              +   E +    PE            +A +R             S H MGTCRMG+ P 
Sbjct  49   GLVLGVELTPGPVPEVSDAAVTSDDELLAYIRA--------AASTSYHPMGTCRMGADPD  100

Query  690  TSVVDPECQVWGTQGLYVMDASVFPSASGVNPMVTNMAIA  729
             +VVDP+ +V G   L V+DASVFPS+   NP +T  A+A
Sbjct  101  DAVVDPDLRVHGVDNLRVVDASVFPSSPSGNPTLTIYALA  140



Lambda      K        H        a         alpha
   0.317    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 958945168


Query= TCONS_00008088

Length=246


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00003017

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  107     4e-29


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 107 bits (270),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 78/167 (47%), Gaps = 13/167 (8%)

Query  12   GLSRKHIIEGTRASLERLQLEYVDIIYAHRPDRLTPMEETVRAFSHVIEKGWAFYWGTSE  71
            G S+++I +    SL+RL  +Y+D+ Y H PD  TP+EET  A   + ++G     G S 
Sbjct  80   GGSKENIRKSLEESLKRLGTDYIDLYYLHWPDPDTPIEETWDALEELKKEGKIRAIGVSN  139

Query  72   WSADEIAEACGIARSLGLIGPIVEQPLYNMLDRRKVEGEFQRLYSRCGIGLTTFSPLKMG  131
            + A++I +    A + G I  +  Q  YN+L RR+ E        + GI L  +SPL  G
Sbjct  140  FDAEQIEK----ALTKGKIPIVAVQVEYNLLRRRQEEELL-EYCKKNGIPLIAYSPLGGG  194

Query  132  LLSGKYNDATTQPPPGSRFAESNDRFANKVRQNYGNDEWAATIKKIV  178
            LL+GKY        PG R                 N E    +++I 
Sbjct  195  LLTGKYTR-DPDKGPGERRRLLKKGTP-------LNLEALEALEEIA  233



Lambda      K        H        a         alpha
   0.319    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00003018

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  107     4e-29


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 107 bits (270),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 78/167 (47%), Gaps = 13/167 (8%)

Query  12   GLSRKHIIEGTRASLERLQLEYVDIIYAHRPDRLTPMEETVRAFSHVIEKGWAFYWGTSE  71
            G S+++I +    SL+RL  +Y+D+ Y H PD  TP+EET  A   + ++G     G S 
Sbjct  80   GGSKENIRKSLEESLKRLGTDYIDLYYLHWPDPDTPIEETWDALEELKKEGKIRAIGVSN  139

Query  72   WSADEIAEACGIARSLGLIGPIVEQPLYNMLDRRKVEGEFQRLYSRCGIGLTTFSPLKMG  131
            + A++I +    A + G I  +  Q  YN+L RR+ E        + GI L  +SPL  G
Sbjct  140  FDAEQIEK----ALTKGKIPIVAVQVEYNLLRRRQEEELL-EYCKKNGIPLIAYSPLGGG  194

Query  132  LLSGKYNDATTQPPPGSRFAESNDRFANKVRQNYGNDEWAATIKKIV  178
            LL+GKY        PG R                 N E    +++I 
Sbjct  195  LLTGKYTR-DPDKGPGERRRLLKKGTP-------LNLEALEALEEIA  233



Lambda      K        H        a         alpha
   0.319    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00003019

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  107     4e-29


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 107 bits (270),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 78/167 (47%), Gaps = 13/167 (8%)

Query  12   GLSRKHIIEGTRASLERLQLEYVDIIYAHRPDRLTPMEETVRAFSHVIEKGWAFYWGTSE  71
            G S+++I +    SL+RL  +Y+D+ Y H PD  TP+EET  A   + ++G     G S 
Sbjct  80   GGSKENIRKSLEESLKRLGTDYIDLYYLHWPDPDTPIEETWDALEELKKEGKIRAIGVSN  139

Query  72   WSADEIAEACGIARSLGLIGPIVEQPLYNMLDRRKVEGEFQRLYSRCGIGLTTFSPLKMG  131
            + A++I +    A + G I  +  Q  YN+L RR+ E        + GI L  +SPL  G
Sbjct  140  FDAEQIEK----ALTKGKIPIVAVQVEYNLLRRRQEEELL-EYCKKNGIPLIAYSPLGGG  194

Query  132  LLSGKYNDATTQPPPGSRFAESNDRFANKVRQNYGNDEWAATIKKIV  178
            LL+GKY        PG R                 N E    +++I 
Sbjct  195  LLTGKYTR-DPDKGPGERRRLLKKGTP-------LNLEALEALEEIA  233



Lambda      K        H        a         alpha
   0.319    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00003020

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  107     4e-29


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 107 bits (270),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 78/167 (47%), Gaps = 13/167 (8%)

Query  12   GLSRKHIIEGTRASLERLQLEYVDIIYAHRPDRLTPMEETVRAFSHVIEKGWAFYWGTSE  71
            G S+++I +    SL+RL  +Y+D+ Y H PD  TP+EET  A   + ++G     G S 
Sbjct  80   GGSKENIRKSLEESLKRLGTDYIDLYYLHWPDPDTPIEETWDALEELKKEGKIRAIGVSN  139

Query  72   WSADEIAEACGIARSLGLIGPIVEQPLYNMLDRRKVEGEFQRLYSRCGIGLTTFSPLKMG  131
            + A++I +    A + G I  +  Q  YN+L RR+ E        + GI L  +SPL  G
Sbjct  140  FDAEQIEK----ALTKGKIPIVAVQVEYNLLRRRQEEELL-EYCKKNGIPLIAYSPLGGG  194

Query  132  LLSGKYNDATTQPPPGSRFAESNDRFANKVRQNYGNDEWAATIKKIV  178
            LL+GKY        PG R                 N E    +++I 
Sbjct  195  LLTGKYTR-DPDKGPGERRRLLKKGTP-------LNLEALEALEEIA  233



Lambda      K        H        a         alpha
   0.319    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00003021

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00008089

Length=256


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00003022

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, ...  112     5e-30


>CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
 This family consists of taurine catabolism dioxygenases 
of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent 
taurine dioxygenase. This enzyme catalyzes 
the oxygenolytic release of sulfite from taurine. TfdA 
from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate 
dioxygenase. TfdA from Alcaligenes eutrophus 
JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also 
included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.
Length=264

 Score = 112 bits (281),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 81/217 (37%), Gaps = 31/217 (14%)

Query  33   SYLDLTPVIGREYTGLQVVDLLSSPERDRLIRDLAVTISQRGVVFFRNQDITPQQMREFM  92
                LTP IG E   L     L    R+ L   LA    + GV+ FR Q ++P+Q+  F 
Sbjct  1    EVRPLTPAIGAEIVDLPDPLALDDELREELRELLA----EHGVLLFRGQPLSPEQLLAFA  56

Query  93   DKLTVLAGCPQSSGLHVHPLTEEGSELGDQISVISSEKQKKGGGLTHQLSDTSRFASVGW  152
             +   L G P       +P          ++  +SS         T        +  + W
Sbjct  57   RRFGPLYGTPGGGRNDGYP----------EVLDVSSVYPDADPANT-------AYTGLPW  99

Query  153  HSDISFERVPSDYAMLKIHTLPPTGGDTLWASAYEVYDRLSPAMATFLEGLTATHDASFF  212
            H+D+S+   P    +L      P GG+TL+A     Y+ L   +    EGLTA H    +
Sbjct  100  HTDLSYLEDPPGIQLLHCLEAAPEGGETLFADGRAAYNALPEELPELFEGLTAVHSYFRY  159

Query  213  HDEARRLGNPLRKGVRGSPLNVGEELQAVHPVIRTNR  249
              EA     P             +     HPV+RT+ 
Sbjct  160  RGEAYPANRPADD----------KHPPTGHPVVRTHP  186



Lambda      K        H        a         alpha
   0.317    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00003024

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, ...  132     1e-39


>CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
 This family consists of taurine catabolism dioxygenases 
of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent 
taurine dioxygenase. This enzyme catalyzes 
the oxygenolytic release of sulfite from taurine. TfdA 
from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate 
dioxygenase. TfdA from Alcaligenes eutrophus 
JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also 
included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.
Length=264

 Score = 132 bits (335),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 55/154 (36%), Positives = 70/154 (45%), Gaps = 12/154 (8%)

Query  1    MLKIHTLPPTGGDTLWASAYEVYDRLSPAMATFLEGLTATHDASFFHDEARRLGNPLRKG  60
            +L      P GG+TL+A     Y+ L   +    EGLTA H    +  EA     P    
Sbjct  114  LLHCLEAAPEGGETLFADGRAAYNALPEELPELFEGLTAVHSYFRYRGEAYPANRPADD-  172

Query  61   VRGSPLNVGEELQAVHPVIRTNPVTGWKSVYVNRGFTKRINGVTKDESDVLLQYLFNLVT  120
                     +     HPV+RT+PVTG K++YVN  F  RI G+   ESD  L  LF L T
Sbjct  173  ---------KHPPTGHPVVRTHPVTGRKALYVNPPFATRIVGLGTPESDEALDALFALAT  223

Query  121  QNHDAQVRFRWNKNDLAIWDNRSTWHCATYDYAE  154
               +   RF+W   DL IWDNR   H  T  +  
Sbjct  224  DP-EFTYRFKWQPGDLVIWDNRRVLHGRT-AFDP  255



Lambda      K        H        a         alpha
   0.320    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00003023

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, ...  146     1e-42


>CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
 This family consists of taurine catabolism dioxygenases 
of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent 
taurine dioxygenase. This enzyme catalyzes 
the oxygenolytic release of sulfite from taurine. TfdA 
from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate 
dioxygenase. TfdA from Alcaligenes eutrophus 
JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also 
included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.
Length=264

 Score = 146 bits (369),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 73/253 (29%), Positives = 103/253 (41%), Gaps = 31/253 (12%)

Query  33   SYLDLTPVIGREYTGLQVVDLLSSPERDRLIRDLAVTISQRGVVFFRNQDITPQQMREFM  92
                LTP IG E   L     L    R+ L   LA    + GV+ FR Q ++P+Q+  F 
Sbjct  1    EVRPLTPAIGAEIVDLPDPLALDDELREELRELLA----EHGVLLFRGQPLSPEQLLAFA  56

Query  93   DKLTVLAGCPQSSGLHVHPLTEEGSELGDQISVISSEKQKKGGGLTHQLSDTSRFASVGW  152
             +   L G P       +P          ++  +SS         T        +  + W
Sbjct  57   RRFGPLYGTPGGGRNDGYP----------EVLDVSSVYPDADPANT-------AYTGLPW  99

Query  153  HSDISFERVPSDYAMLKIHTLPPTGGDTLWASAYEVYDRLSPAMATFLEGLTATHDASFF  212
            H+D+S+   P    +L      P GG+TL+A     Y+ L   +    EGLTA H    +
Sbjct  100  HTDLSYLEDPPGIQLLHCLEAAPEGGETLFADGRAAYNALPEELPELFEGLTAVHSYFRY  159

Query  213  HDEARRLGNPLRKGVRGSPLNVGEELQAVHPVIRTNPVTGWKSVYVNRGFTKRINGVTKD  272
              EA     P             +     HPV+RT+PVTG K++YVN  F  RI G+   
Sbjct  160  RGEAYPANRPADD----------KHPPTGHPVVRTHPVTGRKALYVNPPFATRIVGLGTP  209

Query  273  ESDVLLQYLFNVC  285
            ESD  L  LF + 
Sbjct  210  ESDEALDALFALA  222



Lambda      K        H        a         alpha
   0.318    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00008090

Length=73
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, ...  55.1    2e-11


>CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
 This family consists of taurine catabolism dioxygenases 
of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent 
taurine dioxygenase. This enzyme catalyzes 
the oxygenolytic release of sulfite from taurine. TfdA 
from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate 
dioxygenase. TfdA from Alcaligenes eutrophus 
JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also 
included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.
Length=264

 Score = 55.1 bits (133),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 18/59 (31%), Positives = 24/59 (41%), Gaps = 0/59 (0%)

Query  1    MLKIHTLPPTGGDTLWASAYEVYDRLSPAMATFLEGLTATHDASFFHDEARRLGNPLRK  59
            +L      P GG+TL+A     Y+ L   +    EGLTA H    +  EA     P   
Sbjct  114  LLHCLEAAPEGGETLFADGRAAYNALPEELPELFEGLTAVHSYFRYRGEAYPANRPADD  172



Lambda      K        H        a         alpha
   0.318    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00003025

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, ...  146     6e-43


>CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
 This family consists of taurine catabolism dioxygenases 
of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent 
taurine dioxygenase. This enzyme catalyzes 
the oxygenolytic release of sulfite from taurine. TfdA 
from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate 
dioxygenase. TfdA from Alcaligenes eutrophus 
JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also 
included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.
Length=264

 Score = 146 bits (369),  Expect = 6e-43, Method: Composition-based stats.
 Identities = 73/255 (29%), Positives = 104/255 (41%), Gaps = 31/255 (12%)

Query  33   SYLDLTPVIGREYTGLQVVDLLSSPERDRLIRDLAVTISQRGVVFFRNQDITPQQMREFM  92
                LTP IG E   L     L    R+ L   LA    + GV+ FR Q ++P+Q+  F 
Sbjct  1    EVRPLTPAIGAEIVDLPDPLALDDELREELRELLA----EHGVLLFRGQPLSPEQLLAFA  56

Query  93   DKLTVLAGCPQSSGLHVHPLTEEGSELGDQISVISSEKQKKGGGLTHQLSDTSRFASVGW  152
             +   L G P       +P          ++  +SS         T        +  + W
Sbjct  57   RRFGPLYGTPGGGRNDGYP----------EVLDVSSVYPDADPANT-------AYTGLPW  99

Query  153  HSDISFERVPSDYAMLKIHTLPPTGGDTLWASAYEVYDRLSPAMATFLEGLTATHDASFF  212
            H+D+S+   P    +L      P GG+TL+A     Y+ L   +    EGLTA H    +
Sbjct  100  HTDLSYLEDPPGIQLLHCLEAAPEGGETLFADGRAAYNALPEELPELFEGLTAVHSYFRY  159

Query  213  HDEARRLGNPLRKGVRGSPLNVGEELQAVHPVIRTNPVTGWKSVYVNRGFTKRINGVTKD  272
              EA     P             +     HPV+RT+PVTG K++YVN  F  RI G+   
Sbjct  160  RGEAYPANRPADD----------KHPPTGHPVVRTHPVTGRKALYVNPPFATRIVGLGTP  209

Query  273  ESDVLLQYLFNVTQN  287
            ESD  L  LF +  +
Sbjct  210  ESDEALDALFALATD  224



Lambda      K        H        a         alpha
   0.317    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00003026

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, ...  185     1e-57


>CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
 This family consists of taurine catabolism dioxygenases 
of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent 
taurine dioxygenase. This enzyme catalyzes 
the oxygenolytic release of sulfite from taurine. TfdA 
from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate 
dioxygenase. TfdA from Alcaligenes eutrophus 
JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also 
included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.
Length=264

 Score = 185 bits (472),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 119/288 (41%), Gaps = 33/288 (11%)

Query  33   SYLDLTPVIGREYTGLQVVDLLSSPERDRLIRDLAVTISQRGVVFFRNQDITPQQMREFM  92
                LTP IG E   L     L    R+ L   LA    + GV+ FR Q ++P+Q+  F 
Sbjct  1    EVRPLTPAIGAEIVDLPDPLALDDELREELRELLA----EHGVLLFRGQPLSPEQLLAFA  56

Query  93   DKLTVLAGCPQSSGLHVHPLTEEGSELGDQISVISSEKQKKGGGLTHQLSDTSRFASVGW  152
             +   L G P       +P          ++  +SS         T        +  + W
Sbjct  57   RRFGPLYGTPGGGRNDGYP----------EVLDVSSVYPDADPANT-------AYTGLPW  99

Query  153  HSDISFERVPSDYAMLKIHTLPPTGGDTLWASAYEVYDRLSPAMATFLEGLTATHDASFF  212
            H+D+S+   P    +L      P GG+TL+A     Y+ L   +    EGLTA H    +
Sbjct  100  HTDLSYLEDPPGIQLLHCLEAAPEGGETLFADGRAAYNALPEELPELFEGLTAVHSYFRY  159

Query  213  HDEARRLGNPLRKGVRGSPLNVGEELQAVHPVIRTNPVTGWKSVYVNRGFTKRINGVTKD  272
              EA     P             +     HPV+RT+PVTG K++YVN  F  RI G+   
Sbjct  160  RGEAYPANRPADD----------KHPPTGHPVVRTHPVTGRKALYVNPPFATRIVGLGTP  209

Query  273  ESDVLLQYLFNLVTQNHDAQVRFRWNKNDLAIWDNRSTWHCATYDYAE  320
            ESD  L  LF L T   +   RF+W   DL IWDNR   H  T  +  
Sbjct  210  ESDEALDALFALATDP-EFTYRFKWQPGDLVIWDNRRVLHGRT-AFDP  255



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00008091

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, ...  111     5e-30


>CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
 This family consists of taurine catabolism dioxygenases 
of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent 
taurine dioxygenase. This enzyme catalyzes 
the oxygenolytic release of sulfite from taurine. TfdA 
from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate 
dioxygenase. TfdA from Alcaligenes eutrophus 
JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also 
included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.
Length=264

 Score = 111 bits (279),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 81/216 (38%), Gaps = 31/216 (14%)

Query  33   SYLDLTPVIGREYTGLQVVDLLSSPERDRLIRDLAVTISQRGVVFFRNQDITPQQMREFM  92
                LTP IG E   L     L    R+ L   LA    + GV+ FR Q ++P+Q+  F 
Sbjct  1    EVRPLTPAIGAEIVDLPDPLALDDELREELRELLA----EHGVLLFRGQPLSPEQLLAFA  56

Query  93   DKLTVLAGCPQSSGLHVHPLTEEGSELGDQISVISSEKQKKGGGLTHQLSDTSRFASVGW  152
             +   L G P       +P          ++  +SS         T        +  + W
Sbjct  57   RRFGPLYGTPGGGRNDGYP----------EVLDVSSVYPDADPANT-------AYTGLPW  99

Query  153  HSDISFERVPSDYAMLKIHTLPPTGGDTLWASAYEVYDRLSPAMATFLEGLTATHDASFF  212
            H+D+S+   P    +L      P GG+TL+A     Y+ L   +    EGLTA H    +
Sbjct  100  HTDLSYLEDPPGIQLLHCLEAAPEGGETLFADGRAAYNALPEELPELFEGLTAVHSYFRY  159

Query  213  HDEARRLGNPLRKGVRGSPLNVGEELQAVHPVIRTN  248
              EA     P             +     HPV+RT+
Sbjct  160  RGEAYPANRPADD----------KHPPTGHPVVRTH  185



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00008092

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, ...  184     3e-57


>CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
 This family consists of taurine catabolism dioxygenases 
of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent 
taurine dioxygenase. This enzyme catalyzes 
the oxygenolytic release of sulfite from taurine. TfdA 
from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate 
dioxygenase. TfdA from Alcaligenes eutrophus 
JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also 
included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.
Length=264

 Score = 184 bits (470),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 86/288 (30%), Positives = 119/288 (41%), Gaps = 33/288 (11%)

Query  33   SYLDLTPVIGREYTGLQVVDLLSSPERDRLIRDLAVTISQRGVVFFRNQDITPQQMREFM  92
                LTP IG E   L     L    R+ L   LA    + GV+ FR Q ++P+Q+  F 
Sbjct  1    EVRPLTPAIGAEIVDLPDPLALDDELREELRELLA----EHGVLLFRGQPLSPEQLLAFA  56

Query  93   DKLTVLAGCPQSSGLHVHPLTEEGSELGDQISVISSEKQKKGGGLTHQLSDTSRFASVGW  152
             +   L G P       +P          ++  +SS         T        +  + W
Sbjct  57   RRFGPLYGTPGGGRNDGYP----------EVLDVSSVYPDADPANT-------AYTGLPW  99

Query  153  HSDISFERVPSDYAMLKIHTLPPTGGDTLWASAYEVYDRLSPAMATFLEGLTATHDASFF  212
            H+D+S+   P    +L      P GG+TL+A     Y+ L   +    EGLTA H    +
Sbjct  100  HTDLSYLEDPPGIQLLHCLEAAPEGGETLFADGRAAYNALPEELPELFEGLTAVHSYFRY  159

Query  213  HDEARRLGNPLRKGVRGSPLNVGEELQAVHPVIRTNPVTGWKSVYVNRGFTKRINGVTKD  272
              EA     P             +     HPV+RT+PVTG K++YVN  F  RI G+   
Sbjct  160  RGEAYPANRPADD----------KHPPTGHPVVRTHPVTGRKALYVNPPFATRIVGLGTP  209

Query  273  ESDVLLQYLFNVVTQNHDAQVRFRWNKNDLAIWDNRSTWHCATYDYAE  320
            ESD  L  LF + T   +   RF+W   DL IWDNR   H  T  +  
Sbjct  210  ESDEALDALFALATDP-EFTYRFKWQPGDLVIWDNRRVLHGRT-AFDP  255



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00003029

Length=4516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 254     2e-74
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  151     6e-39
CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-termina...  58.7    8e-11


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 254 bits (650),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 126/457 (28%), Positives = 195/457 (43%), Gaps = 50/457 (11%)

Query  26   FEGWAQKSPTSIALDFVHSLPSASTVAEHSTLTYAALNAAATYLAIHIRSLLSDNTRNAG  85
             E  A ++P   AL+          V E   LTY  L+  A  LA     L +      G
Sbjct  1    LERQAARTPDKTALE----------VGEGRRLTYRELDERANRLA---AGLRALGVG-KG  46

Query  86   SRIIPVYMSTSPELYISYLGILKAGYAFCPIPTDAPPQRVREIFQDIDSSVILGDGEEPS  145
             R+  + +  SPE  +++L  LKAG  + P+    P + +  I +D  + V++ D     
Sbjct  47   DRVA-ILLPNSPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKL  105

Query  146  SVSWFLSAAGEATSKPTWVNVAEVSRWKHLSREDTEIATEDRLFEPPDIDHNEIAYLLFT  205
                      E       ++   V + + L   +     +     PP  D +++AY+++T
Sbjct  106  EELLEALGKLEVVKLVLVLDRDPVLKEEPL--PEEAKPADVPPPPPPPPDPDDLAYIIYT  163

Query  206  SGSTGKPKGVQVSHLAVTCSIESHATAIPLPGTSAGDFRWFQFASPTFDPSL-MEIFVTL  264
            SG+TGKPKGV ++H  +  ++ S     P       D R         D  L + +   L
Sbjct  164  SGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPL  223

Query  265  SSGGTLCSASRSLTLTD--LEGTINEARATVMMATPSLAALL------RPAQLTTLQYLW  316
             +G T+        L    L   I   + TV+   P+L  +L      + A L++L+ + 
Sbjct  224  LAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVL  283

Query  317  TMGEKLNRTVIENFTQKAHSNDLNGDSVPALRLLVNAYGPTEAAINCTFFAPVEYH-TRG  375
            + G  L   +   F       +L G        LVN YG TE     T   P++      
Sbjct  284  SGGAPLPPELARRF------RELFG------GALVNGYGLTETTGVVTTPLPLDEDLRSL  331

Query  376  SIIGEPLPTCSIFVLDPASHTPKPIPAGLAGELAIGGPQVSQGYLNRPEETANSFVHSPE  435
              +G PLP   + ++D    T +P+P G  GEL + GP V +GYLN PE TA +F    E
Sbjct  332  GSVGRPLPGTEVKIVDD--ETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFD---E  386

Query  436  YGYLYRTGDLARIVWDEKGAQVIEFLGRITSDQVKIS  472
             G+ YRTGDL R   DE G   +E +GR   DQ+K+ 
Sbjct  387  DGW-YRTGDLGR--RDEDGY--LEIVGRK-KDQIKLG  417


 Score = 249 bits (639),  Expect = 6e-73, Method: Composition-based stats.
 Identities = 124/432 (29%), Positives = 184/432 (43%), Gaps = 38/432 (9%)

Query  2308  LELNAREHPEWTAVEVASSISASGIEKQSMSYGTLNAAANCVAAFIASVGY-KNRMIAVC  2366
             LE  A   P+ TA+EV         E + ++Y  L+  AN +AA + ++G  K   +A+ 
Sbjct  1     LERQAARTPDKTALEVG--------EGRRLTYRELDERANRLAAGLRALGVGKGDRVAIL  52

Query  2367  AGRNLPSYPV-IVGVFKSGNTYLPIDNNLPNDRKTFLIEDGNCPLVFTETAF-----AAT  2420
                N P + V  +   K+G  Y+P++  LP +   +++ED    ++ T+ A         
Sbjct  53    L-PNSPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEA  111

Query  2421  FSDVPETCRVLCIDHPSFVDSLAGMPTDNRAYAS-------DPQDNAYLLYTSGSTGKPK  2473
                +     VL +D    +           A          DP D AY++YTSG+TGKPK
Sbjct  112   LGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPK  171

Query  2474  GVMVSRANLSAFIESFSEFVCRVAPSTLELGGRGRYLAQASRAFDV-HLLEMFFAWRHGM  2532
             GVM++  NL A + S      RV P    LG   R L+      D    L +      G 
Sbjct  172   GVMLTHRNLVANVLSIK----RVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGA  227

Query  2533  ASVTAERTMLLDDLQL--TITKWGITHASMVPS----LVDQTNLRPELCPELKYLSVGGE  2586
               V       LD   L   I ++ +T    VP+    L++    +  L   L+ +  GG 
Sbjct  228   TVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGA  287

Query  2587  KISKRVLDTWAGLPHVALANAYGPTEVTIGCTFAL--VGKETTIRNIGPPLSACTCHVLI  2644
              +   +   +  L   AL N YG TE T   T  L       ++ ++G PL      ++ 
Sbjct  288   PLPPELARRFRELFGGALVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVD  347

Query  2645  PGTMDYALRGQTGELCFTGDIVGNGYLNRPDATGFVQGPDGEKMYRTGDIGRLMSDDSVE  2704
               T +    G+ GELC  G  V  GYLN P+ T      DG   YRTGD+GR   D  +E
Sbjct  348   DETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDEDG--WYRTGDLGRRDEDGYLE  405

Query  2705  YVGRGDDQTKIR  2716
              VGR  DQ K+ 
Sbjct  406   IVGRKKDQIKLG  417


 Score = 220 bits (563),  Expect = 9e-63, Method: Composition-based stats.
 Identities = 113/437 (26%), Positives = 162/437 (37%), Gaps = 48/437 (11%)

Query  1188  FENHANSHPDDMALLFKYDLEDDGNLQNISWTYGELNARADNLAAYL----CETYDKLTN  1243
              E  A   PD  AL      E          TY EL+ RA+ LAA L        D    
Sbjct  1     LERQAARTPDKTAL------EVGEG---RRLTYRELDERANRLAAGLRALGVGKGD----  47

Query  1244  KVVPICIEKSPAMYIAILGILKAGGAWCPIDTFSPAQRRHDLIKRTGAGVLLVSSE----  1299
               V I +  SP   +A L  LKAG  + P++   PA+    +++ +GA VL+        
Sbjct  48    -RVAILLPNSPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLE  106

Query  1300  --DGEQPKDAIPIGIDVVDVKKY--ADPLVSWPSVGRWSSKKLSSPAG--LAYLIWTSGT  1353
                    K  +   + V+D       +PL                P    LAY+I+TSGT
Sbjct  107   ELLEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGT  166

Query  1354  TGAPKGVPITHSAAVSCFRSLKKDIP-SDVSGGVVRCLQFSQYTFDVS-IQDLFYTWSLG  1411
             TG PKGV +TH   V+   S+K+  P     G   R L       D      L      G
Sbjct  167   TGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAG  226

Query  1412  GVLISATREIML--GSFAKLANTTRATHAHLTPAF------AAGVPRNSCETLEVITMIG  1463
               ++       L   +  +L    + T  +  P        A    R    +L ++   G
Sbjct  227   ATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGG  286

Query  1464  EKLTQHVADDWGTDMRA--YNTYGPAEVTIVSTVREFGNDCLNIKSANVGWPMESVSVFV  1521
               L   +A  +         N YG  E T V T     ++ L     +VG P+    V +
Sbjct  287   APLPPELARRFRELFGGALVNGYGLTETTGVVTTPLPLDEDLR-SLGSVGRPLPGTEVKI  345

Query  1522  --TRNKQIVMKNAVGELALGGPQLSPGYLDQEDVTKAKYVWSEEAGQILYYTGDLVRMLA  1579
                   + V     GEL + GP +  GYL+  ++T   +          Y TGDL R   
Sbjct  346   VDDETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDEDG-----WYRTGDLGRRDE  400

Query  1580  DGSLEFMNRVDDLVKIG  1596
             DG LE + R  D +K+G
Sbjct  401   DGYLEIVGRKKDQIKLG  417


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 151 bits (384),  Expect = 6e-39, Method: Composition-based stats.
 Identities = 93/361 (26%), Positives = 149/361 (41%), Gaps = 39/361 (11%)

Query  3514  TPLQAGM-ITRTLGSDTQVYVHPHIVRLTEGVDIDRLSKAISEVVAKNDILRTSFHPIAE  3572
             +P Q  M     L   +  Y  P +++LT  +D +RL KA+ E++ ++D LRT F    E
Sbjct  8     SPAQKRMWFLEKLEPHSSAYNMPAVLKLTGELDPERLEKALQELINRHDALRTVFI-RQE  66

Query  3573  NGVTWVGAVHTNPPLQWKEITLPSNADVIAE-LTSLYSFREVA---DFET-PPVRFVLVH  3627
             NG   V  +    P + + I +   ++   E     +  R++    D E  P  R  L  
Sbjct  67    NGEP-VQVILEERPFELEIIDISDLSESEEEEAIEAFIQRDLQSPFDLEKGPLFRAGLFR  125

Query  3628  RKNEKLFVVI-MHHALYDGVSLPLLFEELAATY----HGQTTVGRPQFSEIAHYIVEGQN  3682
                 +  +++ MHH + DGVSL +L  +LA  Y     G+     P  +    Y    Q 
Sbjct  126   IAENRHHLLLSMHHIIVDGVSLGILLRDLADLYQQLLKGEPLP-LPPKTPYKDYAEWLQQ  184

Query  3683  --------DSCDFWTKKLAGYEPV--------EIPALSSSEATERMLLSERKIGLDVEKV  3726
                         +W ++L G  PV             S         L E       E +
Sbjct  185   YLQSEDYQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSFTLDED----TEELL  240

Query  3727  VESCKSMEVTVQSVALLAYAKVLACLGGKRDVVFGQVLAGRSLPVPGADQTIGPLFNTVA  3786
              +  K+   T+  V L AY  +L+   G+ D+V G   +GR  P P  ++ +G   NT+ 
Sbjct  241   RKLAKAHGTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGSGR--PSPDIERMVGMFVNTLP  298

Query  3787  QRV-LFEPKFLSNREMAQRVQQLTSESQAFQHAPLKDVQRALRQEHGMNAASLFDTLFVF  3845
              R+     K  S  E+ +RVQ+    ++  Q  P  D+   LR    ++   LFD +F F
Sbjct  299   LRIDPKGGKTFS--ELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSF  356

Query  3846  Q  3846
             Q
Sbjct  357   Q  357


 Score = 118 bits (299),  Expect = 7e-28, Method: Composition-based stats.
 Identities = 104/479 (22%), Positives = 186/479 (39%), Gaps = 72/479 (15%)

Query  728   IQTVLPTTETQSGMLTSFLRTSTDSSFATRSYIYH--SVISLEPHVDIERLKKAWESVIA  785
             +Q   P +  Q  M   FL           S  Y+  +V+ L   +D ERL+KA + +I 
Sbjct  1     VQDEYPLSPAQKRMW--FL-----EKLEPHSSAYNMPAVLKLTGELDPERLEKALQELIN  53

Query  786   SYDSFRTRFCWIDDDMAPFAQCILKEDAASAPMWAIN--HTFGDSMHEDSLTRALREAEN  843
              +D+ RT F    ++  P  Q IL  +     +  I+          E       R+ ++
Sbjct  54    RHDALRTVFI-RQENGEPV-QVIL--EERPFELEIIDISDLSESEEEEAIEAFIQRDLQS  109

Query  844   TISLDS--PWKLSLLESSGDKV-IILSMFHGIFDGGSLQLLLENVSSVYDG-----QLPA  895
                L+    ++  L   + ++  ++LSM H I DG SL +LL +++ +Y        LP 
Sbjct  110   PFDLEKGPLFRAGLFRIAENRHHLLLSMHHIIVDGVSLGILLRDLADLYQQLLKGEPLPL  169

Query  896   P-----RTSLEHVVVNHFQANQTATSNFWKEYLNKYSP-IAFPSLTAYRPPAVNATGCVE  949
             P     +   E +       +    + +W E L    P +  P    Y  PA  +     
Sbjct  170   PPKTPYKDYAEWLQQYLQSEDYQKDAAYWLEQLEGELPVLQLPKD--YARPADRSFKGDR  227

Query  950   IT---PRTTHDILKQQSRTIGSTPLSVLQAAWASLLLAYTGTQDHDVVMGSVISGRFDPD  1006
             ++      T ++L++ ++  G+T   VL AA+  LL  YTG QD D+V+G+  SGR  PD
Sbjct  228   LSFTLDEDTEELLRKLAKAHGTTLNDVLLAAYGLLLSRYTG-QD-DIVVGTPGSGRPSPD  285

Query  1007  SEICIGPTFTTIPTRL-ALGQIPKAGGFWTNKSVVNHLASLNAKALSHLQPRLGSLVTAD  1065
              E  +G    T+P R+   G    +        ++  +      A  H     G LV  D
Sbjct  286   IERMVGMFVNTLPLRIDPKGGKTFS-------ELIKRVQEDLLSAEPHQGYPFGDLV-ND  337

Query  1066  SKLP--------YDTVLAYQDFSAGSSTSSIWKSIDHPPMAN--------DYAVMIEVWP  1109
              +LP        +D + ++Q++    S    +  +    ++          Y + +    
Sbjct  338   LRLPRDLSRHPLFDPMFSFQNYLGQDSQEEEF-QLSELDLSVSSVIEEEAKYDLSLTASE  396

Query  1110  ARDSSLTLRASFALSQMDRDGAKVMLHQLDDIIAFILQNPD---------GDFENALLY  1159
              R   LT++  +  S  D +  +       +++   + +P           D E   L 
Sbjct  397   -RGGGLTIKIDYNTSLFDEETIERFAEHFKELLEQAIAHPSQPLSELDLLSDAEKQKLL  454


 Score = 112 bits (281),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 88/401 (22%), Positives = 149/401 (37%), Gaps = 52/401 (13%)

Query  2967  PCLPLQEGLVARSINSEEDQLYVNHIALSFGPGLDSGRLRFAWQDTADNSEILRTCFAPL  3026
             P  P Q+ +            Y     L     LD  RL  A Q+  +  + LRT F   
Sbjct  6     PLSPAQKRMWFLEKLEPHSSAYNMPAVLKLTGELDPERLEKALQELINRHDALRTVFIRQ  65

Query  3027  E-KEIVQVVLTPGGAISWTED----EYDSLEDCIKEQRARQQEISRGIIKNMTDVPPVRF  3081
             E  E VQV+L          D         E+ I+     Q+++      ++   P  R 
Sbjct  66    ENGEPVQVILEERPFELEIIDISDLSESEEEEAIEAFI--QRDLQSPF--DLEKGPLFRA  121

Query  3082  HLATLSSKRPLVLFIAIHHALYDGESFSMLLEDVAARYVGEPVTRRGSPAAFIDHVY---  3138
              L  ++  R   L +++HH + DG S  +LL D+A  Y  + + +           Y   
Sbjct  122   GLFRIAENR-HHLLLSMHHIIVDGVSLGILLRDLADLY--QQLLKGEPLPLPPKTPYKDY  178

Query  3139  ---------GQNLEKAQQHWVNALSDCQPTI--------FRVDTGVVEETTFINRKLHAG  3181
                       ++ +K   +W+  L    P +            +   +  +F    L   
Sbjct  179   AEWLQQYLQSEDYQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSFT---LDED  235

Query  3182  LAKLERHSADLH-TTVPSLMQALFALLLADRVNSSDVTYGLVLSGRAVAVPDAESVLLPC  3240
               +L R  A  H TT+  ++ A + LLL+      D+  G   SGR    PD E ++   
Sbjct  236   TEELLRKLAKAHGTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGSGR--PSPDIERMVGMF  293

Query  3241  ITTIPARLNTSGLKTVSDVVRSVHQSTARSLEYQHTSLRHIQRWLKSEK-----PLFDCL  3295
             + T+P R++  G KT S++++ V +    +  +Q      +   L+  +     PLFD +
Sbjct  294   VNTLPLRIDPKGGKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPM  353

Query  3296  FSYIRSTPAPKNTLWGQLESTMP--SEYPLAVEIEANSEKD  3334
             FS+       +N L    +      SE  L+V      E  
Sbjct  354   FSF-------QNYLGQDSQEEEFQLSELDLSVSSVIEEEAK  387


 Score = 83.5 bits (207),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 72/332 (22%), Positives = 123/332 (37%), Gaps = 40/332 (12%)

Query  4098  RIDSGKLEEAWNQLRQRHHILRTCFVATSPSMAVQAVLKDAPQNAEIFKV-----IESPA  4152
              +D  +LE+A  +L  RH  LRT F+       VQ +L++ P   EI  +      E   
Sbjct  38    ELDPERLEKALQELINRHDALRTVFIRQENGEPVQVILEERPFELEIIDISDLSESEEEE  97

Query  4153  CIEEAAKAQAREEGLNPSSLFVPPVRLRLLKASDKDGIQIF-INHAAYDAWTMPMFVSEL  4211
              IE   +    +   +      P  R  L + ++     +  ++H   D  ++ + + +L
Sbjct  98    AIEAFIQRD-LQSPFDLEKG--PLFRAGLFRIAENRHHLLLSMHHIIVDGVSLGILLRDL  154

Query  4212  AHLYR-----EQPVESTPDFPSFVEYATR------SLREVDEQTYWSSQVGSSLP--TLI  4258
             A LY+     E      P    + +YA        S     +  YW  Q+   LP   L 
Sbjct  155   ADLYQQLLKGEPLPL--PPKTPYKDYAEWLQQYLQSEDYQKDAAYWLEQLEGELPVLQLP  212

Query  4259  KPTNQGLPKQFFVG-----VWEKVQNLSQLERACRSACLSLQSVVLLAVSRSLARTTGVQ  4313
             K   +    + F G       ++      L +  ++   +L  V+L A    L+R TG Q
Sbjct  213   KDYAR-PADRSFKGDRLSFTLDE-DTEELLRKLAKAHGTTLNDVLLAAYGLLLSRYTG-Q  269

Query  4314  SPT-IGLYQTGRSASFSNIENLSGPCLNVTPFTFPSPGAKAESNALDEVQAIQNS--LAE  4370
                 +G   +GR +   +IE + G  +N  P      G K  S  +  VQ    S    +
Sbjct  270   DDIVVGTPGSGRPS--PDIERMVGMFVNTLPLRIDPKGGKTFSELIKRVQEDLLSAEPHQ  327

Query  4371  RVLYEQSCLRDILTNWASTKGKGPLFNTWVNL  4402
                +    L + L        + PLF+   + 
Sbjct  328   GYPFGD--LVNDLRLPRDL-SRHPLFDPMFSF  356


 Score = 83.2 bits (206),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 155/376 (41%), Gaps = 55/376 (15%)

Query  1845  TPIQE-----SLLSETMGTYNLYWSNHLFSLDKSVDVKRLKQAWLALCQKNEALRTGFIP  1899
             +P Q+       L      YN+     +  L   +D +RL++A   L  +++ALRT FI 
Sbjct  8     SPAQKRMWFLEKLEPHSSAYNM---PAVLKLTGELDPERLEKALQELINRHDALRTVFI-  63

Query  1900  VAEVNNSSRKDDLDFSILQVLHDHPTLDWEYVMCEDHEWDRLLHSRIEDVMKAHQKTYF-  1958
                     R+++ +   +QV+ +    + E +   D          IE  ++   ++ F 
Sbjct  64    --------RQENGEP--VQVILEERPFELEIIDISDLSESEE-EEAIEAFIQRDLQSPFD  112

Query  1959  --KQPPWAVTVLDNGVERFMVL-TMHHSIHDGPSLDLIERDLRSAY--------IDKPPS  2007
               K P +   +      R  +L +MHH I DG SL ++ RDL   Y        +  PP 
Sbjct  113   LEKGPLFRAGLFRIAENRHHLLLSMHHIIVDGVSLGILLRDLADLYQQLLKGEPLPLPPK  172

Query  2008  RYQLRSA--LSKILPTDEMAAETRRFWSSELQKYSELDAPAWPDLTGKRKPETAVQEHNL  2065
                   A  L + L +++   +   +W  +L+   EL     P    K     A +  + 
Sbjct  173   TPYKDYAEWLQQYLQSEDYQKD-AAYWLEQLE--GELPVLQLP----KDYARPADR--SF  223

Query  2066  ISEQMRMT---EPLEKLQSISAELGVSSIASLIRAAWGFVSLS-YLGVPAAVFAETVSDR  2121
               +++  T   +  E L+ ++   G  ++  ++ AA+G + LS Y G    V     S R
Sbjct  224   KGDRLSFTLDEDTEELLRKLAKAHGT-TLNDVLLAAYG-LLLSRYTGQDDIVVGTPGSGR  281

Query  2122  ILHADLDNGIGPLISVVPVPFDPKG--TAREVLAEQQRISTQSRKYRHIHAREVRRMLNR  2179
                 D++  +G  ++ +P+  DPKG  T  E++   Q     +  ++     ++   L  
Sbjct  282   -PSPDIERMVGMFVNTLPLRIDPKGGKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRL  340

Query  2180  PR---GEPLYPAVFAF  2192
             PR     PL+  +F+F
Sbjct  341   PRDLSRHPLFDPMFSF  356


>CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-terminal domain. 
 This is a small domain that is found C terminal to pfam00501. 
It has a central beta sheet core that is flanked by alpha 
helices.
Length=76

 Score = 58.7 bits (143),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 28/83 (34%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query  480  EIESVLATLTGVREVVAVVPKRDASVQGSEQIVACIVADSLSEDAAPEFVRLADECAHRH  539
            E+ES L +   V E  AVV   D  ++G E  VA +V   L          L        
Sbjct  1    EVESALVSHPAVAEA-AVVGVPDE-LKG-EAPVAFVV---LKPGVELLEEELVAHVR-EE  53

Query  540  LAAYMCPSSYVFFDSIPRTSSGK  562
            L  Y  P   VF D +P+T SGK
Sbjct  54   LGPYAVPKEVVFVDELPKTRSGK  76



Lambda      K        H        a         alpha
   0.317    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5377977360


Query= TCONS_00003028

Length=4763
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 253     3e-74
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  152     5e-39
CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-termina...  59.1    7e-11


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 253 bits (649),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 126/457 (28%), Positives = 195/457 (43%), Gaps = 50/457 (11%)

Query  273  FEGWAQKSPTSIALDFVHSLPSASTVAEHSTLTYAALNAAATYLAIHIRSLLSDNTRNAG  332
             E  A ++P   AL+          V E   LTY  L+  A  LA     L +      G
Sbjct  1    LERQAARTPDKTALE----------VGEGRRLTYRELDERANRLA---AGLRALGVG-KG  46

Query  333  SRIIPVYMSTSPELYISYLGILKAGYAFCPIPTDAPPQRVREIFQDIDSSVILGDGEEPS  392
             R+  + +  SPE  +++L  LKAG  + P+    P + +  I +D  + V++ D     
Sbjct  47   DRVA-ILLPNSPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKL  105

Query  393  SVSWFLSAAGEATSKPTWVNVAEVSRWKHLSREDTEIATEDRLFEPPDIDHNEIAYLLFT  452
                      E       ++   V + + L   +     +     PP  D +++AY+++T
Sbjct  106  EELLEALGKLEVVKLVLVLDRDPVLKEEPL--PEEAKPADVPPPPPPPPDPDDLAYIIYT  163

Query  453  SGSTGKPKGVQVSHLAVTCSIESHATAIPLPGTSAGDFRWFQFASPTFDPSL-MEIFVTL  511
            SG+TGKPKGV ++H  +  ++ S     P       D R         D  L + +   L
Sbjct  164  SGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPL  223

Query  512  SSGGTLCSASRSLTLTD--LEGTINEARATVMMATPSLAALL------RPAQLTTLQYLW  563
             +G T+        L    L   I   + TV+   P+L  +L      + A L++L+ + 
Sbjct  224  LAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVL  283

Query  564  TMGEKLNRTVIENFTQKAHSNDLNGDSVPALRLLVNAYGPTEAAINCTFFAPVEYH-TRG  622
            + G  L   +   F       +L G        LVN YG TE     T   P++      
Sbjct  284  SGGAPLPPELARRF------RELFG------GALVNGYGLTETTGVVTTPLPLDEDLRSL  331

Query  623  SIIGEPLPTCSIFVLDPASHTPKPIPAGLAGELAIGGPQVSQGYLNRPEETANSFVHSPE  682
              +G PLP   + ++D    T +P+P G  GEL + GP V +GYLN PE TA +F    E
Sbjct  332  GSVGRPLPGTEVKIVDD--ETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFD---E  386

Query  683  YGYLYRTGDLARIVWDEKGAQVIEFLGRITSDQVKIS  719
             G+ YRTGDL R   DE G   +E +GR   DQ+K+ 
Sbjct  387  DGW-YRTGDLGR--RDEDGY--LEIVGRK-KDQIKLG  417


 Score = 249 bits (639),  Expect = 6e-73, Method: Composition-based stats.
 Identities = 124/432 (29%), Positives = 184/432 (43%), Gaps = 38/432 (9%)

Query  2555  LELNAREHPEWTAVEVASSISASGIEKQSMSYGTLNAAANCVAAFIASVGY-KNRMIAVC  2613
             LE  A   P+ TA+EV         E + ++Y  L+  AN +AA + ++G  K   +A+ 
Sbjct  1     LERQAARTPDKTALEVG--------EGRRLTYRELDERANRLAAGLRALGVGKGDRVAIL  52

Query  2614  AGRNLPSYPV-IVGVFKSGNTYLPIDNNLPNDRKTFLIEDGNCPLVFTETAF-----AAT  2667
                N P + V  +   K+G  Y+P++  LP +   +++ED    ++ T+ A         
Sbjct  53    L-PNSPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEA  111

Query  2668  FSDVPETCRVLCIDHPSFVDSLAGMPTDNRAYAS-------DPQDNAYLLYTSGSTGKPK  2720
                +     VL +D    +           A          DP D AY++YTSG+TGKPK
Sbjct  112   LGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPK  171

Query  2721  GVMVSRANLSAFIESFSEFVCRVAPSTLELGGRGRYLAQASRAFDV-HLLEMFFAWRHGM  2779
             GVM++  NL A + S      RV P    LG   R L+      D    L +      G 
Sbjct  172   GVMLTHRNLVANVLSIK----RVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGA  227

Query  2780  ASVTAERTMLLDDLQL--TITKWGITHASMVPS----LVDQTNLRPELCPELKYLSVGGE  2833
               V       LD   L   I ++ +T    VP+    L++    +  L   L+ +  GG 
Sbjct  228   TVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGA  287

Query  2834  KISKRVLDTWAGLPHVALANAYGPTEVTIGCTFAL--VGKETTIRNIGPPLSACTCHVLI  2891
              +   +   +  L   AL N YG TE T   T  L       ++ ++G PL      ++ 
Sbjct  288   PLPPELARRFRELFGGALVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVD  347

Query  2892  PGTMDYALRGQTGELCFTGDIVGNGYLNRPDATGFVQGPDGEKMYRTGDIGRLMSDDSVE  2951
               T +    G+ GELC  G  V  GYLN P+ T      DG   YRTGD+GR   D  +E
Sbjct  348   DETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDEDG--WYRTGDLGRRDEDGYLE  405

Query  2952  YVGRGDDQTKIR  2963
              VGR  DQ K+ 
Sbjct  406   IVGRKKDQIKLG  417


 Score = 220 bits (562),  Expect = 1e-62, Method: Composition-based stats.
 Identities = 113/437 (26%), Positives = 162/437 (37%), Gaps = 48/437 (11%)

Query  1435  FENHANSHPDDMALLFKYDLEDDGNLQNISWTYGELNARADNLAAYL----CETYDKLTN  1490
              E  A   PD  AL      E          TY EL+ RA+ LAA L        D    
Sbjct  1     LERQAARTPDKTAL------EVGEG---RRLTYRELDERANRLAAGLRALGVGKGD----  47

Query  1491  KVVPICIEKSPAMYIAILGILKAGGAWCPIDTFSPAQRRHDLIKRTGAGVLLVSSE----  1546
               V I +  SP   +A L  LKAG  + P++   PA+    +++ +GA VL+        
Sbjct  48    -RVAILLPNSPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLE  106

Query  1547  --DGEQPKDAIPIGIDVVDVKKY--ADPLVSWPSVGRWSSKKLSSPAG--LAYLIWTSGT  1600
                    K  +   + V+D       +PL                P    LAY+I+TSGT
Sbjct  107   ELLEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGT  166

Query  1601  TGAPKGVPITHSAAVSCFRSLKKDIP-SDVSGGVVRCLQFSQYTFDVS-IQDLFYTWSLG  1658
             TG PKGV +TH   V+   S+K+  P     G   R L       D      L      G
Sbjct  167   TGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAG  226

Query  1659  GVLISATREIML--GSFAKLANTTRATHAHLTPAF------AAGVPRNSCETLEVITMIG  1710
               ++       L   +  +L    + T  +  P        A    R    +L ++   G
Sbjct  227   ATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGG  286

Query  1711  EKLTQHVADDWGTDMRA--YNTYGPAEVTIVSTVREFGNDCLNIKSANVGWPMESVSVFV  1768
               L   +A  +         N YG  E T V T     ++ L     +VG P+    V +
Sbjct  287   APLPPELARRFRELFGGALVNGYGLTETTGVVTTPLPLDEDLR-SLGSVGRPLPGTEVKI  345

Query  1769  --TRNKQIVMKNAVGELALGGPQLSPGYLDQEDVTKAKYVWSEEAGQILYYTGDLVRMLA  1826
                   + V     GEL + GP +  GYL+  ++T   +          Y TGDL R   
Sbjct  346   VDDETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDEDG-----WYRTGDLGRRDE  400

Query  1827  DGSLEFMNRVDDLVKIG  1843
             DG LE + R  D +K+G
Sbjct  401   DGYLEIVGRKKDQIKLG  417


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 152 bits (385),  Expect = 5e-39, Method: Composition-based stats.
 Identities = 93/361 (26%), Positives = 149/361 (41%), Gaps = 39/361 (11%)

Query  3761  TPLQAGM-ITRTLGSDTQVYVHPHIVRLTEGVDIDRLSKAISEVVAKNDILRTSFHPIAE  3819
             +P Q  M     L   +  Y  P +++LT  +D +RL KA+ E++ ++D LRT F    E
Sbjct  8     SPAQKRMWFLEKLEPHSSAYNMPAVLKLTGELDPERLEKALQELINRHDALRTVFI-RQE  66

Query  3820  NGVTWVGAVHTNPPLQWKEITLPSNADVIAE-LTSLYSFREVA---DFET-PPVRFVLVH  3874
             NG   V  +    P + + I +   ++   E     +  R++    D E  P  R  L  
Sbjct  67    NGEP-VQVILEERPFELEIIDISDLSESEEEEAIEAFIQRDLQSPFDLEKGPLFRAGLFR  125

Query  3875  RKNEKLFVVI-MHHALYDGVSLPLLFEELAATY----HGQTTVGRPQFSEIAHYIVEGQN  3929
                 +  +++ MHH + DGVSL +L  +LA  Y     G+     P  +    Y    Q 
Sbjct  126   IAENRHHLLLSMHHIIVDGVSLGILLRDLADLYQQLLKGEPLP-LPPKTPYKDYAEWLQQ  184

Query  3930  --------DSCDFWTKKLAGYEPV--------EIPALSSSEATERMLLSERKIGLDVEKV  3973
                         +W ++L G  PV             S         L E       E +
Sbjct  185   YLQSEDYQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSFTLDED----TEELL  240

Query  3974  VESCKSMEVTVQSVALLAYAKVLACLGGKRDVVFGQVLAGRSLPVPGADQTIGPLFNTVA  4033
              +  K+   T+  V L AY  +L+   G+ D+V G   +GR  P P  ++ +G   NT+ 
Sbjct  241   RKLAKAHGTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGSGR--PSPDIERMVGMFVNTLP  298

Query  4034  QRV-LFEPKFLSNREMAQRVQQLTSESQAFQHAPLKDVQRALRQEHGMNAASLFDTLFVF  4092
              R+     K  S  E+ +RVQ+    ++  Q  P  D+   LR    ++   LFD +F F
Sbjct  299   LRIDPKGGKTFS--ELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSF  356

Query  4093  Q  4093
             Q
Sbjct  357   Q  357


 Score = 119 bits (300),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 104/479 (22%), Positives = 186/479 (39%), Gaps = 72/479 (15%)

Query  975   IQTVLPTTETQSGMLTSFLRTSTDSSFATRSYIYH--SVISLEPHVDIERLKKAWESVIA  1032
             +Q   P +  Q  M   FL           S  Y+  +V+ L   +D ERL+KA + +I 
Sbjct  1     VQDEYPLSPAQKRMW--FL-----EKLEPHSSAYNMPAVLKLTGELDPERLEKALQELIN  53

Query  1033  SYDSFRTRFCWIDDDMAPFAQCILKEDAASAPMWAIN--HTFGDSMHEDSLTRALREAEN  1090
              +D+ RT F    ++  P  Q IL  +     +  I+          E       R+ ++
Sbjct  54    RHDALRTVFI-RQENGEPV-QVIL--EERPFELEIIDISDLSESEEEEAIEAFIQRDLQS  109

Query  1091  TISLDS--PWKLSLLESSGDKV-IILSMFHGIFDGGSLQLLLENVSSVYDG-----QLPA  1142
                L+    ++  L   + ++  ++LSM H I DG SL +LL +++ +Y        LP 
Sbjct  110   PFDLEKGPLFRAGLFRIAENRHHLLLSMHHIIVDGVSLGILLRDLADLYQQLLKGEPLPL  169

Query  1143  P-----RTSLEHVVVNHFQANQTATSNFWKEYLNKYSP-IAFPSLTAYRPPAVNATGCVE  1196
             P     +   E +       +    + +W E L    P +  P    Y  PA  +     
Sbjct  170   PPKTPYKDYAEWLQQYLQSEDYQKDAAYWLEQLEGELPVLQLPKD--YARPADRSFKGDR  227

Query  1197  IT---PRTTHDILKQQSRTIGSTPLSVLQAAWASLLLAYTGTQDHDVVMGSVISGRFDPD  1253
             ++      T ++L++ ++  G+T   VL AA+  LL  YTG QD D+V+G+  SGR  PD
Sbjct  228   LSFTLDEDTEELLRKLAKAHGTTLNDVLLAAYGLLLSRYTG-QD-DIVVGTPGSGRPSPD  285

Query  1254  SEICIGPTFTTIPTRL-ALGQIPKAGGFWTNKSVVNHLASLNAKALSHLQPRLGSLVTAD  1312
              E  +G    T+P R+   G    +        ++  +      A  H     G LV  D
Sbjct  286   IERMVGMFVNTLPLRIDPKGGKTFS-------ELIKRVQEDLLSAEPHQGYPFGDLV-ND  337

Query  1313  SKLP--------YDTVLAYQDFSAGSSTSSIWKSIDHPPMAN--------DYAVMIEVWP  1356
              +LP        +D + ++Q++    S    +  +    ++          Y + +    
Sbjct  338   LRLPRDLSRHPLFDPMFSFQNYLGQDSQEEEF-QLSELDLSVSSVIEEEAKYDLSLTASE  396

Query  1357  ARDSSLTLRASFALSQMDRDGAKVMLHQLDDIIAFILQNPD---------GDFENALLY  1406
              R   LT++  +  S  D +  +       +++   + +P           D E   L 
Sbjct  397   -RGGGLTIKIDYNTSLFDEETIERFAEHFKELLEQAIAHPSQPLSELDLLSDAEKQKLL  454


 Score = 112 bits (283),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 88/401 (22%), Positives = 149/401 (37%), Gaps = 52/401 (13%)

Query  3214  PCLPLQEGLVARSINSEEDQLYVNHIALSFGPGLDSGRLRFAWQDTADNSEILRTCFAPL  3273
             P  P Q+ +            Y     L     LD  RL  A Q+  +  + LRT F   
Sbjct  6     PLSPAQKRMWFLEKLEPHSSAYNMPAVLKLTGELDPERLEKALQELINRHDALRTVFIRQ  65

Query  3274  E-KEIVQVVLTPGGAISWTED----EYDSLEDCIKEQRARQQEISRGIIKNMTDVPPVRF  3328
             E  E VQV+L          D         E+ I+     Q+++      ++   P  R 
Sbjct  66    ENGEPVQVILEERPFELEIIDISDLSESEEEEAIEAFI--QRDLQSPF--DLEKGPLFRA  121

Query  3329  HLATLSSKRPLVLFIAIHHALYDGESFSMLLEDVAARYVGEPVTRRGSPAAFIDHVY---  3385
              L  ++  R   L +++HH + DG S  +LL D+A  Y  + + +           Y   
Sbjct  122   GLFRIAENR-HHLLLSMHHIIVDGVSLGILLRDLADLY--QQLLKGEPLPLPPKTPYKDY  178

Query  3386  ---------GQNLEKAQQHWVNALSDCQPTI--------FRVDTGVVEETTFINRKLHAG  3428
                       ++ +K   +W+  L    P +            +   +  +F    L   
Sbjct  179   AEWLQQYLQSEDYQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSFT---LDED  235

Query  3429  LAKLERHSADLH-TTVPSLMQALFALLLADRVNSSDVTYGLVLSGRAVAVPDAESVLLPC  3487
               +L R  A  H TT+  ++ A + LLL+      D+  G   SGR    PD E ++   
Sbjct  236   TEELLRKLAKAHGTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGSGR--PSPDIERMVGMF  293

Query  3488  ITTIPARLNTSGLKTVSDVVRSVHQSTARSLEYQHTSLRHIQRWLKSEK-----PLFDCL  3542
             + T+P R++  G KT S++++ V +    +  +Q      +   L+  +     PLFD +
Sbjct  294   VNTLPLRIDPKGGKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPM  353

Query  3543  FSYIRSTPAPKNTLWGQLESTMP--SEYPLAVEIEANSEKD  3581
             FS+       +N L    +      SE  L+V      E  
Sbjct  354   FSF-------QNYLGQDSQEEEFQLSELDLSVSSVIEEEAK  387


 Score = 83.9 bits (208),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 156/376 (41%), Gaps = 55/376 (15%)

Query  2092  TPIQE-----SLLSETMGTYNLYWSNHLFSLDKSVDVKRLKQAWLALCQKNEALRTGFIP  2146
             +P Q+       L      YN+     +  L   +D +RL++A   L  +++ALRT FI 
Sbjct  8     SPAQKRMWFLEKLEPHSSAYNM---PAVLKLTGELDPERLEKALQELINRHDALRTVFI-  63

Query  2147  VAEVNNSSRKDDLDFSILQVLHDHPTLDWEYVMCEDHEWDRLLHSRIEDVMKAHQKTYF-  2205
                     R+++ +   +QV+ +    + E +   D   +      IE  ++   ++ F 
Sbjct  64    --------RQENGEP--VQVILEERPFELEIIDISDLS-ESEEEEAIEAFIQRDLQSPFD  112

Query  2206  --KQPPWAVTVLDNGVERFMVL-TMHHSIHDGPSLDLIERDLRSAY--------IDKPPS  2254
               K P +   +      R  +L +MHH I DG SL ++ RDL   Y        +  PP 
Sbjct  113   LEKGPLFRAGLFRIAENRHHLLLSMHHIIVDGVSLGILLRDLADLYQQLLKGEPLPLPPK  172

Query  2255  RYQLRSA--LSKILPTDEMAAETRRFWSSELQKYSELDAPAWPDLTGKRKPETAVQEHNL  2312
                   A  L + L +++   +   +W  +L+   EL     P    K     A +  + 
Sbjct  173   TPYKDYAEWLQQYLQSEDYQKD-AAYWLEQLE--GELPVLQLP----KDYARPADR--SF  223

Query  2313  ISEQMRMT---EPLEKLQSISAELGVSSIASLIRAAWGFVSLS-YLGVPAAVFAETVSDR  2368
               +++  T   +  E L+ ++   G  ++  ++ AA+G + LS Y G    V     S R
Sbjct  224   KGDRLSFTLDEDTEELLRKLAKAHGT-TLNDVLLAAYG-LLLSRYTGQDDIVVGTPGSGR  281

Query  2369  ILHADLDNGIGPLISVVPVPFDPKG--TAREVLAEQQRISTQSRKYRHIHAREVRRMLNR  2426
                 D++  +G  ++ +P+  DPKG  T  E++   Q     +  ++     ++   L  
Sbjct  282   -PSPDIERMVGMFVNTLPLRIDPKGGKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRL  340

Query  2427  PR---GEPLYPAVFAF  2439
             PR     PL+  +F+F
Sbjct  341   PRDLSRHPLFDPMFSF  356


 Score = 83.5 bits (207),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 72/332 (22%), Positives = 123/332 (37%), Gaps = 40/332 (12%)

Query  4345  RIDSGKLEEAWNQLRQRHHILRTCFVATSPSMAVQAVLKDAPQNAEIFKV-----IESPA  4399
              +D  +LE+A  +L  RH  LRT F+       VQ +L++ P   EI  +      E   
Sbjct  38    ELDPERLEKALQELINRHDALRTVFIRQENGEPVQVILEERPFELEIIDISDLSESEEEE  97

Query  4400  CIEEAAKAQAREEGLNPSSLFVPPVRLRLLKASDKDGIQIF-INHAAYDAWTMPMFVSEL  4458
              IE   +    +   +      P  R  L + ++     +  ++H   D  ++ + + +L
Sbjct  98    AIEAFIQRD-LQSPFDLEKG--PLFRAGLFRIAENRHHLLLSMHHIIVDGVSLGILLRDL  154

Query  4459  AHLYR-----EQPVESTPDFPSFVEYATR------SLREVDEQTYWSSQVGSSLP--TLI  4505
             A LY+     E      P    + +YA        S     +  YW  Q+   LP   L 
Sbjct  155   ADLYQQLLKGEPLPL--PPKTPYKDYAEWLQQYLQSEDYQKDAAYWLEQLEGELPVLQLP  212

Query  4506  KPTNQGLPKQFFVG-----VWEKVQNLSQLERACRSACLSLQSVVLLAVSRSLARTTGVQ  4560
             K   +    + F G       ++      L +  ++   +L  V+L A    L+R TG Q
Sbjct  213   KDYAR-PADRSFKGDRLSFTLDE-DTEELLRKLAKAHGTTLNDVLLAAYGLLLSRYTG-Q  269

Query  4561  SPT-IGLYQTGRSASFSNIENLSGPCLNVTPFTFPSPGAKAESNALDEVQAIQNS--LAE  4617
                 +G   +GR +   +IE + G  +N  P      G K  S  +  VQ    S    +
Sbjct  270   DDIVVGTPGSGRPS--PDIERMVGMFVNTLPLRIDPKGGKTFSELIKRVQEDLLSAEPHQ  327

Query  4618  RVLYEQSCLRDILTNWASTKGKGPLFNTWVNL  4649
                +    L + L        + PLF+   + 
Sbjct  328   GYPFGD--LVNDLRLPRDL-SRHPLFDPMFSF  356


>CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-terminal domain. 
 This is a small domain that is found C terminal to pfam00501. 
It has a central beta sheet core that is flanked by alpha 
helices.
Length=76

 Score = 59.1 bits (144),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 28/83 (34%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query  727  EIESVLATLTGVREVVAVVPKRDASVQGSEQIVACIVADSLSEDAAPEFVRLADECAHRH  786
            E+ES L +   V E  AVV   D  ++G E  VA +V   L          L        
Sbjct  1    EVESALVSHPAVAEA-AVVGVPDE-LKG-EAPVAFVV---LKPGVELLEEELVAHVR-EE  53

Query  787  LAAYMCPSSYVFFDSIPRTSSGK  809
            L  Y  P   VF D +P+T SGK
Sbjct  54   LGPYAVPKEVVFVDELPKTRSGK  76



Lambda      K        H        a         alpha
   0.317    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0727    0.140     1.90     42.6     43.6 

Effective search space used: 5679192872


Query= TCONS_00008094

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00003030

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00003031

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00008095

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00008096

Length=468


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00008097

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00008098

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00003033

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460788 pfam03055, RPE65, Retinal pigment epithelial membrane ...  222     7e-69


>CDD:460788 pfam03055, RPE65, Retinal pigment epithelial membrane protein. 
 This family represents a retinal pigment epithelial membrane 
receptor which is abundantly expressed in retinal pigment 
epithelium, and binds plasma retinal binding protein. The 
family also includes the sequence related neoxanthin cleavage 
enzyme in plants and lignostilbene-alpha,beta-dioxygenase 
in bacteria.
Length=449

 Score = 222 bits (568),  Expect = 7e-69, Method: Composition-based stats.
 Identities = 107/398 (27%), Positives = 154/398 (39%), Gaps = 70/398 (18%)

Query  35   SFFQKMKTVLVPTDSVSDPQMVNSNVTVFANMPGMLKHGPTGPASSHFKVLTCLTDANQI  94
            + F           +V      N+N  V                  H   L  LT+A   
Sbjct  82   ALFGGYGGPATGGPAVRGKVKNNANTNVVY----------------HGGRLLALTEAGLP  125

Query  95   TQANPETLEPIAASTQQELHPDLKGQLYCAHPQFDHRTGDVYNYNLHLG-PRSTYRIYHT  153
             + +PETLE +             G+ + AHP+ D  TG++YN+    G P  TY ++  
Sbjct  126  YELDPETLETLGRDDF----DGQLGKTFTAHPKVDPETGELYNFGYSAGGPPLTYYVFDP  181

Query  154  SAHTSRTEVIATFSIKAAFIHSFFMTEDYIIFCVWPAYFKGLGTSILWERNMLDAMKFDP  213
                +R   I       A+IH F +TE+Y++F   P  F          ++  DA+++DP
Sbjct  182  DGKLTREVWIPLP--GPAYIHDFAITENYVVFVEQPLVFDLE----ERLKSGGDALEWDP  235

Query  214  TAQSHWFVSTSMD---------------TLH---------------RTYYEDLLPPNGEA  243
               + + V   +                  H                  Y+D +      
Sbjct  236  EKPTRFGV---IPRRGKEVRWFETPPFFVFHTANAYEEEGGEVVVDLCRYDDDVFDPLYL  292

Query  244  SNFTLRRSETPMTVRYRLPRLPKESTTRTVVTAERVFGFESGELPTINPRFATKRARYHY  303
                          RYRL    K +   T  T E +      E P INPR+  ++ RY Y
Sbjct  293  DAKDFDPLPPSRLRRYRLD--LK-TGGVTRETPEALSDR-PCEFPRINPRYVGRKYRYVY  348

Query  304  CIVNRGHTSF--FDGIGKVDLETQIIQYWGSDTAPHTS-SESIFIPDGTGDAEDAGYLLS  360
                RG +    FDG+ KVDLET   Q +     P     E IF+P      ED G+LLS
Sbjct  349  GAAARGPSDNALFDGLVKVDLETGEEQVF--SFGPGWYPGEPIFVPRPGDAEEDDGWLLS  406

Query  361  VVLNGETGASYLVCLDARTLTE-VGRAEHDHAISFGLH  397
            VV +G+TG S L+ LDA+ L E V RAE  H + +G H
Sbjct  407  VVYDGDTGRSELLVLDAKDLEEGVARAELPHRVPYGFH  444



Lambda      K        H        a         alpha
   0.320    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00003034

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00003035

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00003036

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461338 pfam04516, CP2, CP2 transcription factor. This family ...  153     6e-46


>CDD:461338 pfam04516, CP2, CP2 transcription factor.  This family represents 
a conserved region in the CP2 transcription factor family.
Length=214

 Score = 153 bits (389),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 60/126 (48%), Positives = 71/126 (56%), Gaps = 12/126 (10%)

Query  2    RALEFVDLRLGS-KKNAPRIKKVDSASFDGFCVTWTSTPEAGSSECVINVRLNFLSTDFS  60
             A+  VD   G  ++       ++S SF+ F  TW  T E       I +R+N LSTDFS
Sbjct  100  AAVRIVDPLYGGYEEQKNTQVNIESISFNAFSFTWNPTEECK-----IFIRVNCLSTDFS  154

Query  61   LSKGVKGVPTRLCVKTEMIGLEDGTPASGSDTEAEICYCKVKVFRDHGAERKLSNDVAHV  120
             SKGVKGVP RL +KT   G     PA      A   YC+VKVFRD GAERKLSNDVA V
Sbjct  155  HSKGVKGVPLRLQIKTYSYGPGSARPA------AHRAYCQVKVFRDKGAERKLSNDVAKV  208

Query  121  QKAIHK  126
            +K I K
Sbjct  209  KKRIGK  214



Lambda      K        H        a         alpha
   0.316    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00003037

Length=286


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00003038

Length=286


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00003039

Length=89
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427724 pfam04119, HSP9_HSP12, Heat shock protein 9/12. These ...  77.2    3e-21


>CDD:427724 pfam04119, HSP9_HSP12, Heat shock protein 9/12.  These heat shock 
proteins (Hsp9 and Hsp12) are strongly expressed, an increase 
of 100 fold, upon entry into stationary phase in yeast.
Length=59

 Score = 77.2 bits (191),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 42/59 (71%), Gaps = 0/59 (0%)

Query  1   MSDTGRKDFTTKAQEKMTPDSQKSTMDKMKETVTDATDRLTGSAQGDSQKSYSQQAYDS  59
           MSD GRKDFT KA E + PDSQKST++K KE VTD  D++ G  Q D QKS +Q+A D 
Sbjct  1   MSDAGRKDFTDKASEAVKPDSQKSTLEKAKEKVTDTADKVAGKVQPDDQKSTTQKAGDK  59



Lambda      K        H        a         alpha
   0.301    0.117    0.309    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00003040

Length=81
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427724 pfam04119, HSP9_HSP12, Heat shock protein 9/12. These ...  78.8    4e-22


>CDD:427724 pfam04119, HSP9_HSP12, Heat shock protein 9/12.  These heat shock 
proteins (Hsp9 and Hsp12) are strongly expressed, an increase 
of 100 fold, upon entry into stationary phase in yeast.
Length=59

 Score = 78.8 bits (195),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 42/59 (71%), Gaps = 0/59 (0%)

Query  1   MSDTGRKDFTTKAQEKMTPDSQKSTMDKMKETVTDATDRLTGSAQGDSQKSYSQQAYDS  59
           MSD GRKDFT KA E + PDSQKST++K KE VTD  D++ G  Q D QKS +Q+A D 
Sbjct  1   MSDAGRKDFTDKASEAVKPDSQKSTLEKAKEKVTDTADKVAGKVQPDDQKSTTQKAGDK  59



Lambda      K        H        a         alpha
   0.302    0.116    0.310    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00003041

Length=128
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  84.6    4e-22
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  69.0    8e-16


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 84.6 bits (210),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 19/126 (15%)

Query  2    IIQALAVSGAKVYITGRTGEKLDRVA-ELYSHNIPGQIIPITADVTSKQSIQKLVDEISS  60
            I + LA  GAKV +  R+ EKL+ VA EL    + G+ + I  DVT +  ++ LV++   
Sbjct  16   IAKRLAKEGAKVVLVDRSEEKLEAVAKEL--GALGGKALFIQGDVTDRAQVKALVEQAVE  73

Query  61   EEKALHILVNNAGISGTTQDTDSQSAEELHQKLFKDESNSVEEWDEIFRTNVTQLCFTTA  120
                L ILVNNAGI+G           EL          S E+W+ +   N+T +   T 
Sbjct  74   RLGRLDILVNNAGITGL------GPFSEL----------SDEDWERVIDVNLTGVFNLTR  117

Query  121  AFLPLL  126
            A LP +
Sbjct  118  AVLPAM  123


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 69.0 bits (170),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 36/126 (29%), Positives = 54/126 (43%), Gaps = 19/126 (15%)

Query  4    QALAVSGAKVYITGRTGEKLDRVAELYSHNIPGQIIPITADVTSKQSIQKLVDEISSEEK  63
            +ALA  GA+V +T        RV EL +  +   ++P   DVT ++ ++ LV     +  
Sbjct  14   RALAEEGAEVVLTDLNEALAKRVEEL-AEELGAAVLP--CDVTDEEQVEALVAAAVEKFG  70

Query  64   ALHILVNNAGISGTTQDTDSQSAEELHQKLFKD-ESNSVEEWDEIFRTNVTQLCFTTAAF  122
             L ILVNNAG +                KL       S E++D     N+  L     A 
Sbjct  71   RLDILVNNAGFAP---------------KLKGPFLDTSREDFDRALDVNLYSLFLLAKAA  115

Query  123  LPLLNK  128
            LPL+ +
Sbjct  116  LPLMKE  121



Lambda      K        H        a         alpha
   0.313    0.128    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00003042

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  137     2e-40
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  129     3e-37


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 137 bits (347),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 74/212 (35%), Positives = 103/212 (49%), Gaps = 30/212 (14%)

Query  18   VALVTGGGSGIGLMIIQALAVSGAKVYITGRTGEKLDRVA-ELYSHNIPGQIIPITADVT  76
            VALVTG  SGIG  I + LA  GAKV +  R+ EKL+ VA EL    + G+ + I  DVT
Sbjct  2    VALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKEL--GALGGKALFIQGDVT  59

Query  77   SKQSIQKLVDEISSEEKALHILVNNAGISGTTQDTDSQSAEELHQKLFKDESNSVEEWDE  136
             +  ++ LV++       L ILVNNAGI+G           EL          S E+W+ 
Sbjct  60   DRAQVKALVEQAVERLGRLDILVNNAGITGL------GPFSEL----------SDEDWER  103

Query  137  IFRTNVTQLCFTTAAFLPLLNNSISG-ILKTA-----QHHFH---YNASKGAAIHVSRML  187
            +   N+T +   T A LP +     G I+  +       +     Y+ASK A I  +R L
Sbjct  104  VIDVNLTGVFNLTRAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSL  163

Query  188  AHGIASSNLKIRVNNIAPGVFPLEMTANDSDE  219
            A  +A     IRVN +APG    +MT    ++
Sbjct  164  ALELAPHG--IRVNAVAPGGVDTDMTKELRED  193


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 129 bits (328),  Expect = 3e-37, Method: Composition-based stats.
 Identities = 72/255 (28%), Positives = 107/255 (42%), Gaps = 37/255 (15%)

Query  26   SGIGLMIIQALAVSGAKVYITGRTGEKLDRVAELYSHNIPGQIIPITADVTSKQSIQKLV  85
            SGIG  I +ALA  GA+V +T        RV EL +  +   ++P   DVT ++ ++ LV
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEEL-AEELGAAVLP--CDVTDEEQVEALV  62

Query  86   DEISSEEKALHILVNNAGISGTTQDTDSQSAEELHQKLFKD-ESNSVEEWDEIFRTNVTQ  144
                 +   L ILVNNAG +                KL       S E++D     N+  
Sbjct  63   AAAVEKFGRLDILVNNAGFAP---------------KLKGPFLDTSREDFDRALDVNLYS  107

Query  145  LCFTTAAFLPLLNN--------SISGILKTAQHHFHYNASKGAAIHVSRMLAHGIASSNL  196
            L     A LPL+          SI    +   ++  Y A+K A   ++R LA  +     
Sbjct  108  LFLLAKAALPLMKEGGSIVNLSSIGA-ERVVPNYNAYGAAKAALEALTRYLAVELGPRG-  165

Query  197  KIRVNNIAPGVFPLEMTANDSDEKQKSSLLKEKYEGKVPAGRPGKDEDMGSAIFSIC---  253
             IRVN I+PG       +      +    L    E + P GR G  E++ +A   +    
Sbjct  166  -IRVNAISPGPIKTLAASGIPGFDE----LLAAAEARAPLGRLGTPEEVANAAAFLASDL  220

Query  254  NQYLNGQTIVVDGGF  268
              Y+ GQ + VDGG+
Sbjct  221  ASYITGQVLYVDGGY  235



Lambda      K        H        a         alpha
   0.315    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00008100

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00003043

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  167     2e-50
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  107     3e-29


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 167 bits (426),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 76/246 (31%), Positives = 111/246 (45%), Gaps = 49/246 (20%)

Query  45   VLVKNNHSALPL-KSPQLLSVFGYDAKGPNALKQNFNWLSYSPAIQENHTLWVGGGSGAN  103
            VL+KN +  LPL K  + ++V G +A  P                        GGGSG  
Sbjct  2    VLLKNENGLLPLPKKAKKIAVIGPNADDPPNG---------------------GGGSGTG  40

Query  104  NAAYIDAPIDAIQRQA---YEDGTSVLYDISSEDPEVDPTT----------DACLVFIN-  149
            N  Y+  P+D I+ +A   Y DG  +   +S+   + D             D  +VF+  
Sbjct  41   NPPYLVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGL  100

Query  150  --SYATEGWDRPGLA-DNSSDTLVKNVARKCANTIVTIHNAGIRVVGEWIDHENVTAVIF  206
                  EG+DR  LA   + D L+K VA     T+V +H+ G   +  W + ENV A++ 
Sbjct  101  DPETEGEGYDRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWAE-ENVDAILA  159

Query  207  AHLPGQDSGRALVELLYGRANPSGKLPYTVAKKVEDYGSLLHPSLPETPYGLFPQSDFDE  266
            A  PGQ+ G A+ ++L+G  NPSGKLP T  K +ED  +   P LP           + E
Sbjct  160  AWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDLPAEGGPLLP---------DLYPE  210

Query  267  GVYIDY  272
            G  + Y
Sbjct  211  GYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 107 bits (269),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 34/70 (49%), Positives = 47/70 (67%), Gaps = 4/70 (6%)

Query  347  VAQLYIGIPNG----PVRQLRGFEKVDVSAGETTQVQFALNRRDLSTWDVEAQQWSLQRG  402
            V QLY+  P      PV++L+GFEKV+++ GE+  V F L+RRDLS WD + Q+W ++ G
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  403  TYRVYVGRSS  412
             Y V VG SS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00008101

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  167     2e-50
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  107     3e-29


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 167 bits (426),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 76/246 (31%), Positives = 111/246 (45%), Gaps = 49/246 (20%)

Query  45   VLVKNNHSALPL-KSPQLLSVFGYDAKGPNALKQNFNWLSYSPAIQENHTLWVGGGSGAN  103
            VL+KN +  LPL K  + ++V G +A  P                        GGGSG  
Sbjct  2    VLLKNENGLLPLPKKAKKIAVIGPNADDPPNG---------------------GGGSGTG  40

Query  104  NAAYIDAPIDAIQRQA---YEDGTSVLYDISSEDPEVDPTT----------DACLVFIN-  149
            N  Y+  P+D I+ +A   Y DG  +   +S+   + D             D  +VF+  
Sbjct  41   NPPYLVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGL  100

Query  150  --SYATEGWDRPGLA-DNSSDTLVKNVARKCANTIVTIHNAGIRVVGEWIDHENVTAVIF  206
                  EG+DR  LA   + D L+K VA     T+V +H+ G   +  W + ENV A++ 
Sbjct  101  DPETEGEGYDRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWAE-ENVDAILA  159

Query  207  AHLPGQDSGRALVELLYGRANPSGKLPYTVAKKVEDYGSLLHPSLPETPYGLFPQSDFDE  266
            A  PGQ+ G A+ ++L+G  NPSGKLP T  K +ED  +   P LP           + E
Sbjct  160  AWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDLPAEGGPLLP---------DLYPE  210

Query  267  GVYIDY  272
            G  + Y
Sbjct  211  GYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 107 bits (269),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 34/70 (49%), Positives = 47/70 (67%), Gaps = 4/70 (6%)

Query  347  VAQLYIGIPNG----PVRQLRGFEKVDVSAGETTQVQFALNRRDLSTWDVEAQQWSLQRG  402
            V QLY+  P      PV++L+GFEKV+++ GE+  V F L+RRDLS WD + Q+W ++ G
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  403  TYRVYVGRSS  412
             Y V VG SS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00003044

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  167     2e-50
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  107     3e-29


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 167 bits (426),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 76/246 (31%), Positives = 111/246 (45%), Gaps = 49/246 (20%)

Query  45   VLVKNNHSALPL-KSPQLLSVFGYDAKGPNALKQNFNWLSYSPAIQENHTLWVGGGSGAN  103
            VL+KN +  LPL K  + ++V G +A  P                        GGGSG  
Sbjct  2    VLLKNENGLLPLPKKAKKIAVIGPNADDPPNG---------------------GGGSGTG  40

Query  104  NAAYIDAPIDAIQRQA---YEDGTSVLYDISSEDPEVDPTT----------DACLVFIN-  149
            N  Y+  P+D I+ +A   Y DG  +   +S+   + D             D  +VF+  
Sbjct  41   NPPYLVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGL  100

Query  150  --SYATEGWDRPGLA-DNSSDTLVKNVARKCANTIVTIHNAGIRVVGEWIDHENVTAVIF  206
                  EG+DR  LA   + D L+K VA     T+V +H+ G   +  W + ENV A++ 
Sbjct  101  DPETEGEGYDRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWAE-ENVDAILA  159

Query  207  AHLPGQDSGRALVELLYGRANPSGKLPYTVAKKVEDYGSLLHPSLPETPYGLFPQSDFDE  266
            A  PGQ+ G A+ ++L+G  NPSGKLP T  K +ED  +   P LP           + E
Sbjct  160  AWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDLPAEGGPLLP---------DLYPE  210

Query  267  GVYIDY  272
            G  + Y
Sbjct  211  GYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 107 bits (269),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 34/70 (49%), Positives = 47/70 (67%), Gaps = 4/70 (6%)

Query  347  VAQLYIGIPNG----PVRQLRGFEKVDVSAGETTQVQFALNRRDLSTWDVEAQQWSLQRG  402
            V QLY+  P      PV++L+GFEKV+++ GE+  V F L+RRDLS WD + Q+W ++ G
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  403  TYRVYVGRSS  412
             Y V VG SS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00003045

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  167     2e-50
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  107     3e-29


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 167 bits (426),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 76/246 (31%), Positives = 111/246 (45%), Gaps = 49/246 (20%)

Query  45   VLVKNNHSALPL-KSPQLLSVFGYDAKGPNALKQNFNWLSYSPAIQENHTLWVGGGSGAN  103
            VL+KN +  LPL K  + ++V G +A  P                        GGGSG  
Sbjct  2    VLLKNENGLLPLPKKAKKIAVIGPNADDPPNG---------------------GGGSGTG  40

Query  104  NAAYIDAPIDAIQRQA---YEDGTSVLYDISSEDPEVDPTT----------DACLVFIN-  149
            N  Y+  P+D I+ +A   Y DG  +   +S+   + D             D  +VF+  
Sbjct  41   NPPYLVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGL  100

Query  150  --SYATEGWDRPGLA-DNSSDTLVKNVARKCANTIVTIHNAGIRVVGEWIDHENVTAVIF  206
                  EG+DR  LA   + D L+K VA     T+V +H+ G   +  W + ENV A++ 
Sbjct  101  DPETEGEGYDRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWAE-ENVDAILA  159

Query  207  AHLPGQDSGRALVELLYGRANPSGKLPYTVAKKVEDYGSLLHPSLPETPYGLFPQSDFDE  266
            A  PGQ+ G A+ ++L+G  NPSGKLP T  K +ED  +   P LP           + E
Sbjct  160  AWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDLPAEGGPLLP---------DLYPE  210

Query  267  GVYIDY  272
            G  + Y
Sbjct  211  GYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 107 bits (269),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 34/70 (49%), Positives = 47/70 (67%), Gaps = 4/70 (6%)

Query  347  VAQLYIGIPNG----PVRQLRGFEKVDVSAGETTQVQFALNRRDLSTWDVEAQQWSLQRG  402
            V QLY+  P      PV++L+GFEKV+++ GE+  V F L+RRDLS WD + Q+W ++ G
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  403  TYRVYVGRSS  412
             Y V VG SS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00008102

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  167     2e-50
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  107     3e-29


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 167 bits (426),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 76/246 (31%), Positives = 111/246 (45%), Gaps = 49/246 (20%)

Query  45   VLVKNNHSALPL-KSPQLLSVFGYDAKGPNALKQNFNWLSYSPAIQENHTLWVGGGSGAN  103
            VL+KN +  LPL K  + ++V G +A  P                        GGGSG  
Sbjct  2    VLLKNENGLLPLPKKAKKIAVIGPNADDPPNG---------------------GGGSGTG  40

Query  104  NAAYIDAPIDAIQRQA---YEDGTSVLYDISSEDPEVDPTT----------DACLVFIN-  149
            N  Y+  P+D I+ +A   Y DG  +   +S+   + D             D  +VF+  
Sbjct  41   NPPYLVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGL  100

Query  150  --SYATEGWDRPGLA-DNSSDTLVKNVARKCANTIVTIHNAGIRVVGEWIDHENVTAVIF  206
                  EG+DR  LA   + D L+K VA     T+V +H+ G   +  W + ENV A++ 
Sbjct  101  DPETEGEGYDRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWAE-ENVDAILA  159

Query  207  AHLPGQDSGRALVELLYGRANPSGKLPYTVAKKVEDYGSLLHPSLPETPYGLFPQSDFDE  266
            A  PGQ+ G A+ ++L+G  NPSGKLP T  K +ED  +   P LP           + E
Sbjct  160  AWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDLPAEGGPLLP---------DLYPE  210

Query  267  GVYIDY  272
            G  + Y
Sbjct  211  GYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 107 bits (269),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 34/70 (49%), Positives = 47/70 (67%), Gaps = 4/70 (6%)

Query  347  VAQLYIGIPNG----PVRQLRGFEKVDVSAGETTQVQFALNRRDLSTWDVEAQQWSLQRG  402
            V QLY+  P      PV++L+GFEKV+++ GE+  V F L+RRDLS WD + Q+W ++ G
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  403  TYRVYVGRSS  412
             Y V VG SS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00008103

Length=622


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 792046840


Query= TCONS_00003047

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  167     2e-50
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  107     3e-29


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 167 bits (426),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 76/246 (31%), Positives = 111/246 (45%), Gaps = 49/246 (20%)

Query  45   VLVKNNHSALPL-KSPQLLSVFGYDAKGPNALKQNFNWLSYSPAIQENHTLWVGGGSGAN  103
            VL+KN +  LPL K  + ++V G +A  P                        GGGSG  
Sbjct  2    VLLKNENGLLPLPKKAKKIAVIGPNADDPPNG---------------------GGGSGTG  40

Query  104  NAAYIDAPIDAIQRQA---YEDGTSVLYDISSEDPEVDPTT----------DACLVFIN-  149
            N  Y+  P+D I+ +A   Y DG  +   +S+   + D             D  +VF+  
Sbjct  41   NPPYLVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGL  100

Query  150  --SYATEGWDRPGLA-DNSSDTLVKNVARKCANTIVTIHNAGIRVVGEWIDHENVTAVIF  206
                  EG+DR  LA   + D L+K VA     T+V +H+ G   +  W + ENV A++ 
Sbjct  101  DPETEGEGYDRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWAE-ENVDAILA  159

Query  207  AHLPGQDSGRALVELLYGRANPSGKLPYTVAKKVEDYGSLLHPSLPETPYGLFPQSDFDE  266
            A  PGQ+ G A+ ++L+G  NPSGKLP T  K +ED  +   P LP           + E
Sbjct  160  AWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDLPAEGGPLLP---------DLYPE  210

Query  267  GVYIDY  272
            G  + Y
Sbjct  211  GYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 107 bits (269),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 34/70 (49%), Positives = 47/70 (67%), Gaps = 4/70 (6%)

Query  347  VAQLYIGIPNG----PVRQLRGFEKVDVSAGETTQVQFALNRRDLSTWDVEAQQWSLQRG  402
            V QLY+  P      PV++L+GFEKV+++ GE+  V F L+RRDLS WD + Q+W ++ G
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  403  TYRVYVGRSS  412
             Y V VG SS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0727    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00008104

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  167     2e-50
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  107     3e-29


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 167 bits (426),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 76/246 (31%), Positives = 111/246 (45%), Gaps = 49/246 (20%)

Query  45   VLVKNNHSALPL-KSPQLLSVFGYDAKGPNALKQNFNWLSYSPAIQENHTLWVGGGSGAN  103
            VL+KN +  LPL K  + ++V G +A  P                        GGGSG  
Sbjct  2    VLLKNENGLLPLPKKAKKIAVIGPNADDPPNG---------------------GGGSGTG  40

Query  104  NAAYIDAPIDAIQRQA---YEDGTSVLYDISSEDPEVDPTT----------DACLVFIN-  149
            N  Y+  P+D I+ +A   Y DG  +   +S+   + D             D  +VF+  
Sbjct  41   NPPYLVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGL  100

Query  150  --SYATEGWDRPGLA-DNSSDTLVKNVARKCANTIVTIHNAGIRVVGEWIDHENVTAVIF  206
                  EG+DR  LA   + D L+K VA     T+V +H+ G   +  W + ENV A++ 
Sbjct  101  DPETEGEGYDRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWAE-ENVDAILA  159

Query  207  AHLPGQDSGRALVELLYGRANPSGKLPYTVAKKVEDYGSLLHPSLPETPYGLFPQSDFDE  266
            A  PGQ+ G A+ ++L+G  NPSGKLP T  K +ED  +   P LP           + E
Sbjct  160  AWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDLPAEGGPLLP---------DLYPE  210

Query  267  GVYIDY  272
            G  + Y
Sbjct  211  GYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 107 bits (269),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 34/70 (49%), Positives = 47/70 (67%), Gaps = 4/70 (6%)

Query  347  VAQLYIGIPNG----PVRQLRGFEKVDVSAGETTQVQFALNRRDLSTWDVEAQQWSLQRG  402
            V QLY+  P      PV++L+GFEKV+++ GE+  V F L+RRDLS WD + Q+W ++ G
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  403  TYRVYVGRSS  412
             Y V VG SS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00003046

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  167     2e-50
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  107     3e-29


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 167 bits (426),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 76/246 (31%), Positives = 111/246 (45%), Gaps = 49/246 (20%)

Query  45   VLVKNNHSALPL-KSPQLLSVFGYDAKGPNALKQNFNWLSYSPAIQENHTLWVGGGSGAN  103
            VL+KN +  LPL K  + ++V G +A  P                        GGGSG  
Sbjct  2    VLLKNENGLLPLPKKAKKIAVIGPNADDPPNG---------------------GGGSGTG  40

Query  104  NAAYIDAPIDAIQRQA---YEDGTSVLYDISSEDPEVDPTT----------DACLVFIN-  149
            N  Y+  P+D I+ +A   Y DG  +   +S+   + D             D  +VF+  
Sbjct  41   NPPYLVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGL  100

Query  150  --SYATEGWDRPGLA-DNSSDTLVKNVARKCANTIVTIHNAGIRVVGEWIDHENVTAVIF  206
                  EG+DR  LA   + D L+K VA     T+V +H+ G   +  W + ENV A++ 
Sbjct  101  DPETEGEGYDRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWAE-ENVDAILA  159

Query  207  AHLPGQDSGRALVELLYGRANPSGKLPYTVAKKVEDYGSLLHPSLPETPYGLFPQSDFDE  266
            A  PGQ+ G A+ ++L+G  NPSGKLP T  K +ED  +   P LP           + E
Sbjct  160  AWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDLPAEGGPLLP---------DLYPE  210

Query  267  GVYIDY  272
            G  + Y
Sbjct  211  GYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 107 bits (269),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 34/70 (49%), Positives = 47/70 (67%), Gaps = 4/70 (6%)

Query  347  VAQLYIGIPNG----PVRQLRGFEKVDVSAGETTQVQFALNRRDLSTWDVEAQQWSLQRG  402
            V QLY+  P      PV++L+GFEKV+++ GE+  V F L+RRDLS WD + Q+W ++ G
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  403  TYRVYVGRSS  412
             Y V VG SS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00008105

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  167     2e-50
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  107     3e-29


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 167 bits (426),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 76/246 (31%), Positives = 111/246 (45%), Gaps = 49/246 (20%)

Query  45   VLVKNNHSALPL-KSPQLLSVFGYDAKGPNALKQNFNWLSYSPAIQENHTLWVGGGSGAN  103
            VL+KN +  LPL K  + ++V G +A  P                        GGGSG  
Sbjct  2    VLLKNENGLLPLPKKAKKIAVIGPNADDPPNG---------------------GGGSGTG  40

Query  104  NAAYIDAPIDAIQRQA---YEDGTSVLYDISSEDPEVDPTT----------DACLVFIN-  149
            N  Y+  P+D I+ +A   Y DG  +   +S+   + D             D  +VF+  
Sbjct  41   NPPYLVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGL  100

Query  150  --SYATEGWDRPGLA-DNSSDTLVKNVARKCANTIVTIHNAGIRVVGEWIDHENVTAVIF  206
                  EG+DR  LA   + D L+K VA     T+V +H+ G   +  W + ENV A++ 
Sbjct  101  DPETEGEGYDRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWAE-ENVDAILA  159

Query  207  AHLPGQDSGRALVELLYGRANPSGKLPYTVAKKVEDYGSLLHPSLPETPYGLFPQSDFDE  266
            A  PGQ+ G A+ ++L+G  NPSGKLP T  K +ED  +   P LP           + E
Sbjct  160  AWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDLPAEGGPLLP---------DLYPE  210

Query  267  GVYIDY  272
            G  + Y
Sbjct  211  GYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 107 bits (269),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 34/70 (49%), Positives = 47/70 (67%), Gaps = 4/70 (6%)

Query  347  VAQLYIGIPNG----PVRQLRGFEKVDVSAGETTQVQFALNRRDLSTWDVEAQQWSLQRG  402
            V QLY+  P      PV++L+GFEKV+++ GE+  V F L+RRDLS WD + Q+W ++ G
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  403  TYRVYVGRSS  412
             Y V VG SS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00003048

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  167     2e-50
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  107     3e-29


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 167 bits (426),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 76/246 (31%), Positives = 111/246 (45%), Gaps = 49/246 (20%)

Query  45   VLVKNNHSALPL-KSPQLLSVFGYDAKGPNALKQNFNWLSYSPAIQENHTLWVGGGSGAN  103
            VL+KN +  LPL K  + ++V G +A  P                        GGGSG  
Sbjct  2    VLLKNENGLLPLPKKAKKIAVIGPNADDPPNG---------------------GGGSGTG  40

Query  104  NAAYIDAPIDAIQRQA---YEDGTSVLYDISSEDPEVDPTT----------DACLVFIN-  149
            N  Y+  P+D I+ +A   Y DG  +   +S+   + D             D  +VF+  
Sbjct  41   NPPYLVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGL  100

Query  150  --SYATEGWDRPGLA-DNSSDTLVKNVARKCANTIVTIHNAGIRVVGEWIDHENVTAVIF  206
                  EG+DR  LA   + D L+K VA     T+V +H+ G   +  W + ENV A++ 
Sbjct  101  DPETEGEGYDRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWAE-ENVDAILA  159

Query  207  AHLPGQDSGRALVELLYGRANPSGKLPYTVAKKVEDYGSLLHPSLPETPYGLFPQSDFDE  266
            A  PGQ+ G A+ ++L+G  NPSGKLP T  K +ED  +   P LP           + E
Sbjct  160  AWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDLPAEGGPLLP---------DLYPE  210

Query  267  GVYIDY  272
            G  + Y
Sbjct  211  GYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 107 bits (269),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 34/70 (49%), Positives = 47/70 (67%), Gaps = 4/70 (6%)

Query  347  VAQLYIGIPNG----PVRQLRGFEKVDVSAGETTQVQFALNRRDLSTWDVEAQQWSLQRG  402
            V QLY+  P      PV++L+GFEKV+++ GE+  V F L+RRDLS WD + Q+W ++ G
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  403  TYRVYVGRSS  412
             Y V VG SS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00003049

Length=648


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 818508450


Query= TCONS_00008106

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00003050

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00003051

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  167     2e-50
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  107     3e-29


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 167 bits (426),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 76/246 (31%), Positives = 111/246 (45%), Gaps = 49/246 (20%)

Query  45   VLVKNNHSALPL-KSPQLLSVFGYDAKGPNALKQNFNWLSYSPAIQENHTLWVGGGSGAN  103
            VL+KN +  LPL K  + ++V G +A  P                        GGGSG  
Sbjct  2    VLLKNENGLLPLPKKAKKIAVIGPNADDPPNG---------------------GGGSGTG  40

Query  104  NAAYIDAPIDAIQRQA---YEDGTSVLYDISSEDPEVDPTT----------DACLVFIN-  149
            N  Y+  P+D I+ +A   Y DG  +   +S+   + D             D  +VF+  
Sbjct  41   NPPYLVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGL  100

Query  150  --SYATEGWDRPGLA-DNSSDTLVKNVARKCANTIVTIHNAGIRVVGEWIDHENVTAVIF  206
                  EG+DR  LA   + D L+K VA     T+V +H+ G   +  W + ENV A++ 
Sbjct  101  DPETEGEGYDRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWAE-ENVDAILA  159

Query  207  AHLPGQDSGRALVELLYGRANPSGKLPYTVAKKVEDYGSLLHPSLPETPYGLFPQSDFDE  266
            A  PGQ+ G A+ ++L+G  NPSGKLP T  K +ED  +   P LP           + E
Sbjct  160  AWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDLPAEGGPLLP---------DLYPE  210

Query  267  GVYIDY  272
            G  + Y
Sbjct  211  GYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 107 bits (269),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 34/70 (49%), Positives = 47/70 (67%), Gaps = 4/70 (6%)

Query  347  VAQLYIGIPNG----PVRQLRGFEKVDVSAGETTQVQFALNRRDLSTWDVEAQQWSLQRG  402
            V QLY+  P      PV++L+GFEKV+++ GE+  V F L+RRDLS WD + Q+W ++ G
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  403  TYRVYVGRSS  412
             Y V VG SS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00003052

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  167     2e-50
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  107     3e-29


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 167 bits (426),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 76/246 (31%), Positives = 111/246 (45%), Gaps = 49/246 (20%)

Query  45   VLVKNNHSALPL-KSPQLLSVFGYDAKGPNALKQNFNWLSYSPAIQENHTLWVGGGSGAN  103
            VL+KN +  LPL K  + ++V G +A  P                        GGGSG  
Sbjct  2    VLLKNENGLLPLPKKAKKIAVIGPNADDPPNG---------------------GGGSGTG  40

Query  104  NAAYIDAPIDAIQRQA---YEDGTSVLYDISSEDPEVDPTT----------DACLVFIN-  149
            N  Y+  P+D I+ +A   Y DG  +   +S+   + D             D  +VF+  
Sbjct  41   NPPYLVTPLDGIRARAGDLYADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGL  100

Query  150  --SYATEGWDRPGLA-DNSSDTLVKNVARKCANTIVTIHNAGIRVVGEWIDHENVTAVIF  206
                  EG+DR  LA   + D L+K VA     T+V +H+ G   +  W + ENV A++ 
Sbjct  101  DPETEGEGYDRTDLALPGNQDALIKAVAAAGKPTVVVLHSGGPVEMEPWAE-ENVDAILA  159

Query  207  AHLPGQDSGRALVELLYGRANPSGKLPYTVAKKVEDYGSLLHPSLPETPYGLFPQSDFDE  266
            A  PGQ+ G A+ ++L+G  NPSGKLP T  K +ED  +   P LP           + E
Sbjct  160  AWYPGQEGGNAIADVLFGDVNPSGKLPVTFPKSLEDLPAEGGPLLP---------DLYPE  210

Query  267  GVYIDY  272
            G  + Y
Sbjct  211  GYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 107 bits (269),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 34/70 (49%), Positives = 47/70 (67%), Gaps = 4/70 (6%)

Query  347  VAQLYIGIPNG----PVRQLRGFEKVDVSAGETTQVQFALNRRDLSTWDVEAQQWSLQRG  402
            V QLY+  P      PV++L+GFEKV+++ GE+  V F L+RRDLS WD + Q+W ++ G
Sbjct  1    VVQLYVRDPVSSVGRPVKELKGFEKVELAPGESKTVTFTLDRRDLSFWDEDGQRWVVEPG  60

Query  403  TYRVYVGRSS  412
             Y V VG SS
Sbjct  61   EYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.315    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00008107

Length=152
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461506 pfam04982, HPP, HPP family. These proteins are integra...  86.0    4e-23


>CDD:461506 pfam04982, HPP, HPP family.  These proteins are integral membrane 
proteins with four transmembrane spanning helices. The 
most conserved region of the alignment is a motif HPP. The function 
of these proteins is uncertain but they may be transporters.
Length=122

 Score = 86.0 bits (214),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%), Gaps = 2/59 (3%)

Query  1    MGLTNTVHPPGGATALLAAVDSTVDAMGWFFVPL-VLIGSLLMLGCALVVNNIQ-RQFP  57
            M LT T+HPP GATALLA +   + A+GW+FV + VL+GSLL++  AL+VNN+  R++P
Sbjct  64   MQLTRTLHPPAGATALLAVLGGPIHALGWWFVLVPVLLGSLLLVLVALLVNNLTGRRYP  122



Lambda      K        H        a         alpha
   0.319    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00003053

Length=152
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461506 pfam04982, HPP, HPP family. These proteins are integra...  86.0    4e-23


>CDD:461506 pfam04982, HPP, HPP family.  These proteins are integral membrane 
proteins with four transmembrane spanning helices. The 
most conserved region of the alignment is a motif HPP. The function 
of these proteins is uncertain but they may be transporters.
Length=122

 Score = 86.0 bits (214),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%), Gaps = 2/59 (3%)

Query  1    MGLTNTVHPPGGATALLAAVDSTVDAMGWFFVPL-VLIGSLLMLGCALVVNNIQ-RQFP  57
            M LT T+HPP GATALLA +   + A+GW+FV + VL+GSLL++  AL+VNN+  R++P
Sbjct  64   MQLTRTLHPPAGATALLAVLGGPIHALGWWFVLVPVLLGSLLLVLVALLVNNLTGRRYP  122



Lambda      K        H        a         alpha
   0.319    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00008108

Length=152
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461506 pfam04982, HPP, HPP family. These proteins are integra...  86.0    4e-23


>CDD:461506 pfam04982, HPP, HPP family.  These proteins are integral membrane 
proteins with four transmembrane spanning helices. The 
most conserved region of the alignment is a motif HPP. The function 
of these proteins is uncertain but they may be transporters.
Length=122

 Score = 86.0 bits (214),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%), Gaps = 2/59 (3%)

Query  1    MGLTNTVHPPGGATALLAAVDSTVDAMGWFFVPL-VLIGSLLMLGCALVVNNIQ-RQFP  57
            M LT T+HPP GATALLA +   + A+GW+FV + VL+GSLL++  AL+VNN+  R++P
Sbjct  64   MQLTRTLHPPAGATALLAVLGGPIHALGWWFVLVPVLLGSLLLVLVALLVNNLTGRRYP  122



Lambda      K        H        a         alpha
   0.319    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00003054

Length=26


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.143    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82037150


Query= TCONS_00003055

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00008109

Length=290


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00008110

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  93.3    3e-21


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 93.3 bits (232),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 88/442 (20%), Positives = 149/442 (34%), Gaps = 92/442 (21%)

Query  7    EFSHYFNDHICPELVIVDSPLNPHRMDLDILPYVPDFLLSLVISVSAIHQVIQSQPNWHS  66
            E   Y+ D++ P L       NP R  L  L      LL  ++++SA H      P+   
Sbjct  1    ELLDYYLDNVSPLLSPFPESSNPFRKVLLPLALSNPALLHALLALSAFHLQSSGPPDLWE  60

Query  67   ITLHRSRALRNKVHPGELEPLQSFQHPLNSLIYKHRSRSLRGLNQYLSEA-----GAEGP  121
                                             +++S +LR L + L+E           
Sbjct  61   RE-----------------------------AQRYKSLALRLLQRALAELSSRLSSNSKY  91

Query  122  DLVFHTVTAMLMSEIQRSAFCNWKIHFEGLKNIIACQGGFEVLVSTRLGNLRYSLSHFML  181
            D V   +  +   EI      +W++H EG K++I  +GG     S     LR+ L +F  
Sbjct  92   DDVLAAILLLCSFEISSGDVSDWRVHLEGAKDLIRLRGGPSKTSSGLSSLLRFLLRNFAY  151

Query  182  VDVMSSVFMAASCLPLDTPSQLRYIDWLP---EIHSDGLESGFPCPDELLACIIHTNNLR  238
             D++SS     +     +     Y+D      E+ S GL+    C + L   I   ++L 
Sbjct  152  HDILSST----TTGRGPSFPSEEYLDLFGDELELGSSGLDPLMGCSNSLFLLISEISDLA  207

Query  239  FILHHHPYDDMAHVNSAINDLVRNIITFSPTTWAERALESYNERLEERVNMQRRRKRLDL  298
                    D+       ++               E+ L S+  R ++          L  
Sbjct  208  REKRSLRSDNELLPLEFLSRAQE----------LEQRLSSWEPRSDDLEIPLDGEDPLSE  257

Query  299  VPRPVEGEGWADLASTFQAATLLYCLRALVLNHGKES-ILQELLGSLYEGLIPDVQCLAS  357
            +           L   ++ A L+Y  R  +L     S  +QEL+  L       ++ L  
Sbjct  258  LLL--------TLTELYRLAALIYLYRR-ILGLPPSSPEVQELVSKL-------LELLDL  301

Query  358  VTLSNLLYVLHPLMDQPLQKGRSMGRFLFWPVLMAGLESNCSYEALSERPFIVRSLQELC  417
            +  S L                     L WP+ +AG E+        +R F++  L  L 
Sbjct  302  LPDSPLAI-----------------SSLLWPLFIAGCEA----VDDDDRDFVLDRLDSLE  340

Query  418  RC-LGDMSALDAAVFLQSAWSR  438
            +  LG++    A   L+  W R
Sbjct  341  KSRLGNVRR--AREILEEVWKR  360



Lambda      K        H        a         alpha
   0.324    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00003056

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            72.5    2e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 72.5 bits (178),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 68/188 (36%), Gaps = 11/188 (6%)

Query  40   WFGFMVAFLSWYAFPPLLSVTIKKDLHMTQDQVANSNIVALLGTLLMRFIAGPLCDRFGP  99
            +    +A L      P L + + +DL ++  ++     +  LG  L + +AG L DRFG 
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  100  RYVFVGCLLGGAIPTAMAGLVTSPQGLIALRFFIGILGATFVP-CQVWCTGFFDKNVVGT  158
            R V +  LL  A+   +    +S   L+ LR   G+      P        +F     G 
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  159  ANALAGGFGNGGGGITYFVMPAIYDSLVHSQGLTPHRAWRVAYVAPFIIIVTLALAMLFL  218
            A  L       G  +   +   +               WR A++   I+ +  A+ +L  
Sbjct  122  ALGLVSAGFGLGAALGPLLGGLLASLF----------GWRAAFLILAILSLLAAVLLLLP  171

Query  219  CEDTPTGK  226
                 + +
Sbjct  172  RPPPESKR  179



Lambda      K        H        a         alpha
   0.329    0.144    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00003058

Length=410


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00003057

Length=410


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00008111

Length=284


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00003059

Length=562


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 702381160


Query= TCONS_00008113

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            75.1    3e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 75.1 bits (185),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 68/188 (36%), Gaps = 11/188 (6%)

Query  40   WFGFMVAFLSWYAFPPLLSVTIKKDLHMTQDQVANSNIVALLGTLLMRFIAGPLCDRFGP  99
            +    +A L      P L + + +DL ++  ++     +  LG  L + +AG L DRFG 
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  100  RYVFVGCLLGGAIPTAMAGLVTSPQGLIALRFFIGILGATFVP-CQVWCTGFFDKNVVGT  158
            R V +  LL  A+   +    +S   L+ LR   G+      P        +F     G 
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  159  ANALAGGFGNGGGGITYFVMPAIYDSLVHSQGLTPHRAWRVAYVAPFIIIVTLALAMLFL  218
            A  L       G  +   +   +               WR A++   I+ +  A+ +L  
Sbjct  122  ALGLVSAGFGLGAALGPLLGGLLASLF----------GWRAAFLILAILSLLAAVLLLLP  171

Query  219  CEDTPTGK  226
                 + +
Sbjct  172  RPPPESKR  179



Lambda      K        H        a         alpha
   0.328    0.143    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00003061

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            80.5    4e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 80.5 bits (199),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 73/421 (17%), Positives = 126/421 (30%), Gaps = 80/421 (19%)

Query  40   WFGFMVAFLSWYAFPPLLSVTIKKDLHMTQDQVANSNIVALLGTLLMRFIAGPLCDRFGP  99
            +    +A L      P L + + +DL ++  ++     +  LG  L + +AG L DRFG 
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  100  RYVFVGCLLGGAIPTAMAGLVTSPQGLIALRFFIGILGATFVP-CQVWCTGFFDKNVVGT  158
            R V +  LL  A+   +    +S   L+ LR   G+      P        +F     G 
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  159  ANALAGGFGNGGGGITYFVMPAIYDSLVHSQGLTPHRAWRVAYVAPFIIIVTLALAMLFL  218
            A  L       G  +   +   +               WR A++   I+ +  A+ +L  
Sbjct  122  ALGLVSAGFGLGAALGPLLGGLLASLF----------GWRAAFLILAILSLLAAVLLLLP  171

Query  219  CEDTPTGKWSQRNDNNPVMQSNIVDLHRPSASGTPSSINVSTVPEKKGVATPQIVDTEAQ  278
                 + +                                                    
Sbjct  172  RPPPESKR----------------------------------------------------  179

Query  279  PVIDISIANNETIKNPTLREALRVAFSLPTLALALPYACSFGAELAINSMLGAYYLKNFP  338
                            +L  A +     P L L L       A   + + L  Y  +   
Sbjct  180  -------PKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLY--QEVL  230

Query  339  SLGQTKSGRWAAMFGLVNVVFRPAGGFMADVIYRYTRSVWGKKVWLVCLGVCMGAAALAV  398
             L    +G    + GL+  + R   G ++D + R  R        L+ L + + AA   +
Sbjct  231  GLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRR-------LLLALLLLILAALGLL  283

Query  399  GLLDPKREGLMFGLVVLMAFFIAASNGANFAIVPHVHPTAN-GIVSGFVGGMGNFGGIAF  457
             L        +   ++L+ F       A  A+V  + P    G  SG     G+ GG   
Sbjct  284  LLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG  343

Query  458  A  458
             
Sbjct  344  P  344



Lambda      K        H        a         alpha
   0.326    0.141    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00008114

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00008115

Length=295


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00003062

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00003067

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            109     6e-27


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 109 bits (274),  Expect = 6e-27, Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 132/369 (36%), Gaps = 25/369 (7%)

Query  56   MCFTYALQYYDKALLSQAAIFGLREDLGLKDGLRYSWVSLVFYFGYMAGCYPISWLSQRF  115
            +     L    ++LL  A    L EDLG+        +  +F  GY         LS RF
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGI-SPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  116  TVGKVCPAICFLWAVVVLCTPACTNYTGMLINRFMLGLIESGVSPAFMLCTGMWYTHSEQ  175
               +V      L+A+ +L     ++   +L+ R + GL    + PA +     W+   E+
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  176  VFRSSLWYSFSGGSNIISPLINYGLGHITGGALRPWQYMYLIAGLATLLWSIILWFVFPG  235
                 L  +  G    + PL+   L  + G     W+  +LI  + +LL +++L    P 
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFG-----WRAAFLILAILSLLAAVLLLLPRPP  174

Query  236  SPQVAKGFTDEERILILERVRSNNAGSENRHFKWYQVREALCSYHFWFIFSISMLSSVGS  295
                     +E R+ ++   +                  AL      ++    +L     
Sbjct  175  PESKRPKPAEEARLSLIVAWK------------------ALLRDPVLWLLLALLLFGFAF  216

Query  296  GAVTTFGSIIFNGMGFTVFQSLLLNMPIGALAFICILGSGYIGRKVPNSRLYVLSGACVP  355
              + T+  +    +G +   + LL    G L  I  L  G +  ++   R  +L+   + 
Sbjct  217  FGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLL-  275

Query  356  VILGSCLIWQLPSSQRAGRIIGFYLINFFSSAWVQCIAMGTSNVAGHTKKATMAAGTFVG  415
            ++    L+    +      ++   L+ F        +    S++A   ++ T +      
Sbjct  276  ILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTA  335

Query  416  YSLGNIIGP  424
             SLG  +GP
Sbjct  336  GSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00008117

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            80.5    2e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 80.5 bits (199),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 111/314 (35%), Gaps = 31/314 (10%)

Query  56   MCFTYALQYYDKALLSQAAIFGLREDLGLKDGLRYSWVSLVFYFGYMAGCYP------RF  109
            +     L    ++LL  A    L EDLG+        +  +F  GY            RF
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGI-SPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  110  TVGKVCPAICFLWAVVVLCTPACTNYTGMLINRFMLGLIESGVSPAFMLCTGMWYTHSEQ  169
               +V      L+A+ +L     ++   +L+ R + GL    + PA +     W+   E+
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  170  VFRSSLWYSFSGGSNIISPLINYGLGHITGGALRPWQYMYLIAGLATLLWSIILWFVFPG  229
                 L  +  G    + PL+   L  + G     W+  +LI  + +LL +++L    P 
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFG-----WRAAFLILAILSLLAAVLLLLPRPP  174

Query  230  SPQVAKGFTDEERILILERVRSNNAGSENRHFKWYQVREALCSYHFWFIFSISMLSSVGS  289
                     +E R+ ++   +                  AL      ++    +L     
Sbjct  175  PESKRPKPAEEARLSLIVAWK------------------ALLRDPVLWLLLALLLFGFAF  216

Query  290  GAVTTFGSIIFNGMGFTVFQSLLLNMPIGALAFICILGSGYIGRKV-PNSRLYVLSGACV  348
              + T+  +    +G +   + LL    G L  I  L  G +  ++    RL +     +
Sbjct  217  FGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLI  276

Query  349  PVILGSCLMYVSFN  362
               LG  L+ ++ +
Sbjct  277  LAALGLLLLSLTLS  290



Lambda      K        H        a         alpha
   0.327    0.142    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00003064

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00008118

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            74.4    2e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 74.4 bits (183),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 100/281 (36%), Gaps = 24/281 (9%)

Query  1    MLINRFMLGLIESGVSPAFMLCTGMWYTHSEQVFRSSLWYSFSGGSNIISPLINYGLGHI  60
            +L+ R + GL    + PA +     W+   E+     L  +  G    + PL+   L  +
Sbjct  88   LLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASL  147

Query  61   TGGALRPWQYMYLIAGLATLLWSIILWFVFPGSPQVAKGFTDEERILILERVRSNNAGSE  120
             G     W+  +LI  + +LL +++L    P          +E R+ ++   +       
Sbjct  148  FG-----WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWK-------  195

Query  121  NRHFKWYQVREALCSYHFWFIFSISMLSSVGSGAVTTFGSIIFNGMGFTVFQSLLLNMPI  180
                       AL      ++    +L       + T+  +    +G +   + LL    
Sbjct  196  -----------ALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLG  244

Query  181  GALAFICILGSGYIGRKVPNSRLYVLSGACVPVILGSCLIWQLPSSQRAGRIIGFYLINF  240
            G L  I  L  G +  ++   R  +L+   + ++    L+    +      ++   L+ F
Sbjct  245  GLLGAIGRLLLGRLSDRLGRRRRLLLALLLL-ILAALGLLLLSLTLSSLWLLLALLLLGF  303

Query  241  FSSAWVQCIAMGTSNVAGHTKKATMAAGTFVGYSLGNIIGP  281
                    +    S++A   ++ T +       SLG  +GP
Sbjct  304  GFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.141    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00008119

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            80.5    1e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 80.5 bits (199),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 60/314 (19%), Positives = 113/314 (36%), Gaps = 25/314 (8%)

Query  4    MCFTYALQYYDKALLSQAAIFGLREDLGLKDGLRYSWVSLVFYFGYMAGCYPISWLSQRF  63
            +     L    ++LL  A    L EDLG+        +  +F  GY         LS RF
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGI-SPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  64   TVGKVCPAICFLWAVVVLCTPACTNYTGMLINRFMLGLIESGVSPAFMLCTGMWYTHSEQ  123
               +V      L+A+ +L     ++   +L+ R + GL    + PA +     W+   E+
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  124  VFRSSLWYSFSGGSNIISPLINYGLGHITGGALRPWQYMYLIAGLATLLWSIILWFVFPG  183
                 L  +  G    + PL+   L  + G     W+  +LI  + +LL +++L    P 
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFG-----WRAAFLILAILSLLAAVLLLLPRPP  174

Query  184  SPQVAKGFTDEERILILERVRSNNAGSENRHFKWYQVREALCSYHFWFIFSISMLSSVGS  243
                     +E R+ ++   +                  AL      ++    +L     
Sbjct  175  PESKRPKPAEEARLSLIVAWK------------------ALLRDPVLWLLLALLLFGFAF  216

Query  244  GAVTTFGSIIFNGMGFTVFQSLLLNMPIGALAFICILGSGYIGRKV-PNSRLYVLSGACV  302
              + T+  +    +G +   + LL    G L  I  L  G +  ++    RL +     +
Sbjct  217  FGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLI  276

Query  303  PVILGSCLMYVSFN  316
               LG  L+ ++ +
Sbjct  277  LAALGLLLLSLTLS  290



Lambda      K        H        a         alpha
   0.329    0.142    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00008120

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            102     1e-24


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 102 bits (257),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 127/368 (35%), Gaps = 32/368 (9%)

Query  56   MCFTYALQYYDKALLSQAAIFGLREDLGLKDGLRYSWVSLVFYFGYMAGCYPISWLSQRF  115
            +     L    ++LL  A    L EDLG+        +  +F  GY         LS RF
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGI-SPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  116  TVGKVCPAICFLWAVVVLCTPACTNYTGMLINRFMLGLIESGVSPAFMLCTGMWYTHSEQ  175
               +V      L+A+ +L     ++   +L+ R + GL    + PA +     W+   E+
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  176  VFRSSLWYSFSGGSNIISPLINYGLGHITGGALRPWQYMYLIAGLATLLWSIILWFVFPG  235
                 L  +  G    + PL+   L  + G     W+  +LI  + +LL +++L    P 
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFG-----WRAAFLILAILSLLAAVLLLLPRPP  174

Query  236  SPQVAKGFTDEERILILERVRSNNAGSENRHFKWYQVREALCSYHFWFIFSISMLSSVGS  295
                     +E R+ ++   +                  AL      ++    +L     
Sbjct  175  PESKRPKPAEEARLSLIVAWK------------------ALLRDPVLWLLLALLLFGFAF  216

Query  296  GAVTTFGSIIFNGMGFTVFQSLLLNMPIGALAFICILGSGYIGRKVPNSRLYVLSGAFR-  354
              + T+  +    +G +   + LL    G L  I  L  G +  ++   R  +L+     
Sbjct  217  FGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLI  276

Query  355  -------WQLPSSQRAGRIIGFYLINFFSSAWVQCIAMGTSNVAGHTKKATMAAGTFVGY  407
                       +      ++   L+ F        +    S++A   ++ T +       
Sbjct  277  LAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAG  336

Query  408  SLGNIIGP  415
            SLG  +GP
Sbjct  337  SLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00003063

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            74.4    2e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 74.4 bits (183),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 100/281 (36%), Gaps = 24/281 (9%)

Query  1    MLINRFMLGLIESGVSPAFMLCTGMWYTHSEQVFRSSLWYSFSGGSNIISPLINYGLGHI  60
            +L+ R + GL    + PA +     W+   E+     L  +  G    + PL+   L  +
Sbjct  88   LLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASL  147

Query  61   TGGALRPWQYMYLIAGLATLLWSIILWFVFPGSPQVAKGFTDEERILILERVRSNNAGSE  120
             G     W+  +LI  + +LL +++L    P          +E R+ ++   +       
Sbjct  148  FG-----WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWK-------  195

Query  121  NRHFKWYQVREALCSYHFWFIFSISMLSSVGSGAVTTFGSIIFNGMGFTVFQSLLLNMPI  180
                       AL      ++    +L       + T+  +    +G +   + LL    
Sbjct  196  -----------ALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLG  244

Query  181  GALAFICILGSGYIGRKVPNSRLYVLSGACVPVILGSCLIWQLPSSQRAGRIIGFYLINF  240
            G L  I  L  G +  ++   R  +L+   + ++    L+    +      ++   L+ F
Sbjct  245  GLLGAIGRLLLGRLSDRLGRRRRLLLALLLL-ILAALGLLLLSLTLSSLWLLLALLLLGF  303

Query  241  FSSAWVQCIAMGTSNVAGHTKKATMAAGTFVGYSLGNIIGP  281
                    +    S++A   ++ T +       SLG  +GP
Sbjct  304  GFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.141    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00008122

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            98.3    4e-23


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 98.3 bits (245),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 66/369 (18%), Positives = 130/369 (35%), Gaps = 31/369 (8%)

Query  56   MCFTYALQYYDKALLSQAAIFGLREDLGLKDGLRYSWVSLVFYFGYMAGCYP------RF  109
            +     L    ++LL  A    L EDLG+        +  +F  GY            RF
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGI-SPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  110  TVGKVCPAICFLWAVVVLCTPACTNYTGMLINRFMLGLIESGVSPAFMLCTGMWYTHSEQ  169
               +V      L+A+ +L     ++   +L+ R + GL    + PA +     W+   E+
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  170  VFRSSLWYSFSGGSNIISPLINYGLGHITGGALRPWQYMYLIAGLATLLWSIILWFVFPG  229
                 L  +  G    + PL+   L  + G     W+  +LI  + +LL +++L    P 
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFG-----WRAAFLILAILSLLAAVLLLLPRPP  174

Query  230  SPQVAKGFTDEERILILERVRSNNAGSENRHFKWYQVREALCSYHFWFIFSISMLSSVGS  289
                     +E R+ ++   +                  AL      ++    +L     
Sbjct  175  PESKRPKPAEEARLSLIVAWK------------------ALLRDPVLWLLLALLLFGFAF  216

Query  290  GAVTTFGSIIFNGMGFTVFQSLLLNMPIGALAFICILGSGYIGRKVPNSRLYVLSGACVP  349
              + T+  +    +G +   + LL    G L  I  L  G +  ++   R  +L+   + 
Sbjct  217  FGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLL-  275

Query  350  VILGSCLIWQLPSSQRAGRIIGFYLINFFSSAWVQCIAMGTSNVAGHTKKATMAAGTFVG  409
            ++    L+    +      ++   L+ F        +    S++A   ++ T +      
Sbjct  276  ILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTA  335

Query  410  YSLGNIIGP  418
             SLG  +GP
Sbjct  336  GSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00008121

Length=311


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00003065

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            67.8    3e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 67.8 bits (166),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 47/280 (17%), Positives = 95/280 (34%), Gaps = 31/280 (11%)

Query  1    MLINRFMLGLIESGVSPAFMLCTGMWYTHSEQVFRSSLWYSFSGGSNIISPLINYGLGHI  60
            +L+ R + GL    + PA +     W+   E+     L  +  G    + PL+   L  +
Sbjct  88   LLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASL  147

Query  61   TGGALRPWQYMYLIAGLATLLWSIILWFVFPGSPQVAKGFTDEERILILERVRSNNAGSE  120
             G     W+  +LI  + +LL +++L    P          +E R+ ++   +       
Sbjct  148  FG-----WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWK-------  195

Query  121  NRHFKWYQVREALCSYHFWFIFSISMLSSVGSGAVTTFGSIIFNGMGFTVFQSLLLNMPI  180
                       AL      ++    +L       + T+  +    +G +   + LL    
Sbjct  196  -----------ALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLG  244

Query  181  GALAFICILGSGYIGRKVPNSRLYVLSGAFR--------WQLPSSQRAGRIIGFYLINFF  232
            G L  I  L  G +  ++   R  +L+                +      ++   L+ F 
Sbjct  245  GLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFG  304

Query  233  SSAWVQCIAMGTSNVAGHTKKATMAAGTFVGYSLGNIIGP  272
                   +    S++A   ++ T +       SLG  +GP
Sbjct  305  FGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.141    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00003066

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            64.7    2e-12


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 64.7 bits (158),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 100/281 (36%), Gaps = 24/281 (9%)

Query  1    MLINRFMLGLIESGVSPAFMLCTGMWYTHSEQVFRSSLWYSFSGGSNIISPLINYGLGHI  60
            +L+ R + GL    + PA +     W+   E+     L  +  G    + PL+   L  +
Sbjct  88   LLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASL  147

Query  61   TGGALRPWQYMYLIAGLATLLWSIILWFVFPGSPQVAKGFTDEERILILERVRSNNAGSE  120
             G     W+  +LI  + +LL +++L    P          +E R+ ++   +       
Sbjct  148  FG-----WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWK-------  195

Query  121  NRHFKWYQVREALCSYHFWFIFSISMLSSVGSGAVTTFGSIIFNGMGFTVFQSLLLNMPI  180
                       AL      ++    +L       + T+  +    +G +   + LL    
Sbjct  196  -----------ALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLG  244

Query  181  GALAFICILGSGYIGRKVPNSRLYVLSGACVPVILGSCLIWQLPSSQRAGRIIGFYLINF  240
            G L  I  L  G +  ++   R  +L+   + ++    L+    +      ++   L+ F
Sbjct  245  GLLGAIGRLLLGRLSDRLGRRRRLLLALLLL-ILAALGLLLLSLTLSSLWLLLALLLLGF  303

Query  241  FSSAWVQCIAMGTSNVAGHTKKATMAAGTFVGYSLGNIIGP  281
                    +    S++A   ++ T +       SLG  +GP
Sbjct  304  GFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00003068

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            91.7    7e-21


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 91.7 bits (228),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 65/368 (18%), Positives = 125/368 (34%), Gaps = 38/368 (10%)

Query  56   MCFTYALQYYDKALLSQAAIFGLREDLGLKDGLRYSWVSLVFYFGYMAGCYP------RF  109
            +     L    ++LL  A    L EDLG+        +  +F  GY            RF
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGI-SPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  110  TVGKVCPAICFLWAVVVLCTPACTNYTGMLINRFMLGLIESGVSPAFMLCTGMWYTHSEQ  169
               +V      L+A+ +L     ++   +L+ R + GL    + PA +     W+   E+
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  170  VFRSSLWYSFSGGSNIISPLINYGLGHITGGALRPWQYMYLIAGLATLLWSIILWFVFPG  229
                 L  +  G    + PL+   L  + G     W+  +LI  + +LL +++L    P 
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFG-----WRAAFLILAILSLLAAVLLLLPRPP  174

Query  230  SPQVAKGFTDEERILILERVRSNNAGSENRHFKWYQVREALCSYHFWFIFSISMLSSVGS  289
                     +E R+ ++   +                  AL      ++    +L     
Sbjct  175  PESKRPKPAEEARLSLIVAWK------------------ALLRDPVLWLLLALLLFGFAF  216

Query  290  GAVTTFGSIIFNGMGFTVFQSLLLNMPIGALAFICILGSGYIGRKVPNSRLYVLSGAFR-  348
              + T+  +    +G +   + LL    G L  I  L  G +  ++   R  +L+     
Sbjct  217  FGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLI  276

Query  349  -------WQLPSSQRAGRIIGFYLINFFSSAWVQCIAMGTSNVAGHTKKATMAAGTFVGY  401
                       +      ++   L+ F        +    S++A   ++ T +       
Sbjct  277  LAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAG  336

Query  402  SLGNIIGP  409
            SLG  +GP
Sbjct  337  SLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598144560


Query= TCONS_00008123

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            80.5    1e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 80.5 bits (199),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 60/314 (19%), Positives = 113/314 (36%), Gaps = 25/314 (8%)

Query  4    MCFTYALQYYDKALLSQAAIFGLREDLGLKDGLRYSWVSLVFYFGYMAGCYPISWLSQRF  63
            +     L    ++LL  A    L EDLG+        +  +F  GY         LS RF
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGI-SPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  64   TVGKVCPAICFLWAVVVLCTPACTNYTGMLINRFMLGLIESGVSPAFMLCTGMWYTHSEQ  123
               +V      L+A+ +L     ++   +L+ R + GL    + PA +     W+   E+
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  124  VFRSSLWYSFSGGSNIISPLINYGLGHITGGALRPWQYMYLIAGLATLLWSIILWFVFPG  183
                 L  +  G    + PL+   L  + G     W+  +LI  + +LL +++L    P 
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFG-----WRAAFLILAILSLLAAVLLLLPRPP  174

Query  184  SPQVAKGFTDEERILILERVRSNNAGSENRHFKWYQVREALCSYHFWFIFSISMLSSVGS  243
                     +E R+ ++   +                  AL      ++    +L     
Sbjct  175  PESKRPKPAEEARLSLIVAWK------------------ALLRDPVLWLLLALLLFGFAF  216

Query  244  GAVTTFGSIIFNGMGFTVFQSLLLNMPIGALAFICILGSGYIGRKV-PNSRLYVLSGACV  302
              + T+  +    +G +   + LL    G L  I  L  G +  ++    RL +     +
Sbjct  217  FGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLI  276

Query  303  PVILGSCLMYVSFN  316
               LG  L+ ++ +
Sbjct  277  LAALGLLLLSLTLS  290



Lambda      K        H        a         alpha
   0.329    0.142    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00003069

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            87.1    2e-19


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 87.1 bits (216),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 56/318 (18%), Positives = 114/318 (36%), Gaps = 24/318 (8%)

Query  6    PISWLSQRFTVGKVCPAICFLWAVVVLCTPACTNYTGMLINRFMLGLIESGVSPAFMLCT  65
                LS RF   +V      L+A+ +L     ++   +L+ R + GL    + PA +   
Sbjct  51   LAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALI  110

Query  66   GMWYTHSEQVFRSSLWYSFSGGSNIISPLINYGLGHITGGALRPWQYMYLIAGLATLLWS  125
              W+   E+     L  +  G    + PL+   L  + G     W+  +LI  + +LL +
Sbjct  111  ADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFG-----WRAAFLILAILSLLAA  165

Query  126  IILWFVFPGSPQVAKGFTDEERILILERVRSNNAGSENRHFKWYQVREALCSYHFWFIFS  185
            ++L    P          +E R+ ++   +                  AL      ++  
Sbjct  166  VLLLLPRPPPESKRPKPAEEARLSLIVAWK------------------ALLRDPVLWLLL  207

Query  186  ISMLSSVGSGAVTTFGSIIFNGMGFTVFQSLLLNMPIGALAFICILGSGYIGRKVPNSRL  245
              +L       + T+  +    +G +   + LL    G L  I  L  G +  ++   R 
Sbjct  208  ALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRR  267

Query  246  YVLSGACVPVILGSCLIWQLPSSQRAGRIIGFYLINFFSSAWVQCIAMGTSNVAGHTKKA  305
             +L+   + ++    L+    +      ++   L+ F        +    S++A   ++ 
Sbjct  268  LLLALLLL-ILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERG  326

Query  306  TMAAGTFVGYSLGNIIGP  323
            T +       SLG  +GP
Sbjct  327  TASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.141    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00003070

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462771 pfam09362, DUF1996, Domain of unknown function (DUF199...  198     5e-62


>CDD:462771 pfam09362, DUF1996, Domain of unknown function (DUF1996).  This 
family of proteins are functionally uncharacterized.
Length=234

 Score = 198 bits (505),  Expect = 5e-62, Method: Composition-based stats.
 Identities = 69/239 (29%), Positives = 95/239 (40%), Gaps = 29/239 (12%)

Query  33   DAIVAPGTYTSHMHTFFGSDAITNVLPTSAELQRGCYSGDNPNDLSVYWVPTLYYVDGD-  91
            D IV PG  +SH+H   G +A    +   +     C S     D S YW PTLY+   + 
Sbjct  1    DPIVNPGQVSSHVHQIVGGNAFNATMTYDSLQDSTCTSCSVAEDKSNYWTPTLYFKARNG  60

Query  92   TFTEVAIFRFS----TYYTNSYSDS----AIPQDFAMISGNASAHSQAEADHPYNGLEWF  143
            TF  V   R +     YY           A P  F MI+G+ +    A A      + + 
Sbjct  61   TFERVPQMRQNGGMTVYYLLRGGGGDNVTAFPPGFRMIAGDPTLRQAALAQ---RAISFR  117

Query  144  CEGSS---ERESDIAKLPTSTCDQHLQLNLLFPQCFN------PDDHSEY-----DFADE  189
            C       E   D    P   C   L+  + FP C++      PD  S          + 
Sbjct  118  CLNYGGPPEGSLDTHGFPDKNCPDGLRAEIHFPSCWDGKNLDSPDHKSHVAYPFSLVDES  177

Query  190  SNTCPEGM-LQMPQLRYRVQYDTKSVAPDGWSGPAPFQLSCSDTPGDGYCFHADFINGW  247
               CP    +++PQL Y + +DT++       G  PF LS  D    GY +H DFINGW
Sbjct  178  GGPCPASHPVRLPQLFYEIIWDTRAFNDGPEDGSQPFVLSNGDP--TGYGYHGDFINGW  234



Lambda      K        H        a         alpha
   0.316    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00003071

Length=732


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 928386976


Query= TCONS_00003072

Length=618


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 786069128


Query= TCONS_00003073

Length=525


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00008125

Length=500


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 619252994


Query= TCONS_00008124

Length=614


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 780091416


Query= TCONS_00008126

Length=364


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00003074

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00008127

Length=414


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00003075

Length=793


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1017151248


Query= TCONS_00008129

Length=414


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00008128

Length=655


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00008130

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0772    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00003076

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00003077

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425589 pfam00296, Bac_luciferase, Luciferase-like monooxygenase   110     1e-29


>CDD:425589 pfam00296, Bac_luciferase, Luciferase-like monooxygenase.  
Length=313

 Score = 110 bits (278),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 99/251 (39%), Gaps = 55/251 (22%)

Query  1    MAAATKNIGFGVTVTTTYEQ-PYHLARRLSTVDHLSKGRY-------------------H  40
            +AAAT  I  G  V     + P  LA + +T+DHLS GR+                   H
Sbjct  61   LAAATSRIRLGTAVVPLPTRHPAVLAEQAATLDHLSGGRFDLGLGTGGPAVEFRRFGVDH  120

Query  41   DDRYAIAEEYVRVTYKLWESSWRDDAVVLDRERGIYTDPSRVREINHEGKYFNVPGPHLC  100
            D+RYA   E++ V  +LW                      R   ++ EG++F + G  L 
Sbjct  121  DERYARLREFLEVLRRLW----------------------RGEPVDFEGEFFTLDGAFLL  158

Query  101  QPSPQRTPVILQAGTSKAGKTFAAQHAEAIFVAGHSPV-VVAKNIAEIRATAQARFGRDP  159
                Q  PV + A +S A    AA+HA+ + + G +P    A+ I  +RA A A  GRDP
Sbjct  159  PRPVQGIPVWV-AASSPAMLELAARHADGLLLWGFAPPAAAAELIERVRAGA-AEAGRDP  216

Query  160  KSIKFLALLCPVLGRTEEEAREKF-QYYRSLGSIDGALALFGGWTGINLDTYGDDEELRH  218
              I+  A L  ++  TEEEAR +       L          G            +     
Sbjct  217  ADIRVGASLTVIVADTEEEARAEARALIAGLPFYRMDSEGAG---------RLAEAREIG  267

Query  219  VESNAIRWASM  229
             E +A  WA  
Sbjct  268  EEYDAGDWAGA  278



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00003078

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425589 pfam00296, Bac_luciferase, Luciferase-like monooxygenase   138     1e-37


>CDD:425589 pfam00296, Bac_luciferase, Luciferase-like monooxygenase.  
Length=313

 Score = 138 bits (349),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 99/374 (26%), Positives = 147/374 (39%), Gaps = 89/374 (24%)

Query  33   LWRHPEDESYRFNDVDHWIELAQLLESAKFHGIFIADVLGGYDVYKGPRNLAPAIVSGAQ  92
              R+          + + +ELA+  E   F G+++A+  GG                   
Sbjct  8    PTRNGGGLGAGSESLRYLVELARAAEELGFDGVWLAEHHGG-------------------  48

Query  93   WPVNEPLAVVSAMAAATKNIGFGVTVTTTYEQ-PYHLARRLSTVDHLSKGRY--------  143
                +P  V++A+AAAT  I  G  V     + P  LA + +T+DHLS GR+        
Sbjct  49   PGGPDPFVVLAALAAATSRIRLGTAVVPLPTRHPAVLAEQAATLDHLSGGRFDLGLGTGG  108

Query  144  -----------HDDRYAIAEEYVRVTYKLWESSWRDDAVVLDRERGIYTDPSRVREINHE  192
                       HD+RYA   E++ V  +LW                      R   ++ E
Sbjct  109  PAVEFRRFGVDHDERYARLREFLEVLRRLW----------------------RGEPVDFE  146

Query  193  GKYFNVPGPHLCQPSPQRTPVILQAGTSKAGKTFAAQHAEAIFVAGHSPV-VVAKNIAEI  251
            G++F + G  L     Q  PV + A +S A    AA+HA+ + + G +P    A+ I  +
Sbjct  147  GEFFTLDGAFLLPRPVQGIPVWV-AASSPAMLELAARHADGLLLWGFAPPAAAAELIERV  205

Query  252  RATAQARFGRDPKSIKFLALLCPVLGRTEEEAREKFQYYRSLGSIDGALALFGGWTGINL  311
            RA A A  GRDP  I+  A L  ++  TEEEAR +            A AL  G     L
Sbjct  206  RAGA-AEAGRDPADIRVGASLTVIVADTEEEARAE------------ARALIAG-----L  247

Query  312  DTYGDDEELRHVESNAIRSAVEGWSKSTPGVAKWTKSTVGQHITVGGLGATPVGTPAQVA  371
              Y  D E     + A     E  +    G A      + +   +       VGTP QVA
Sbjct  248  PFYRMDSEGAGRLAEAREIGEEYDAGDWAGAADAVPDELVRAFAL-------VGTPEQVA  300

Query  372  DEMERWVREADVDG  385
            + +  +  EA VD 
Sbjct  301  ERLAAYA-EAGVDH  313



Lambda      K        H        a         alpha
   0.318    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00003079

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425589 pfam00296, Bac_luciferase, Luciferase-like monooxygenase   141     3e-39


>CDD:425589 pfam00296, Bac_luciferase, Luciferase-like monooxygenase.  
Length=313

 Score = 141 bits (357),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 99/374 (26%), Positives = 147/374 (39%), Gaps = 89/374 (24%)

Query  33   LWRHPEDESYRFNDVDHWIELAQLLESAKFHGIFIADVLGGYDVYKGPRNLAPAIVSGAQ  92
              R+          + + +ELA+  E   F G+++A+  GG                   
Sbjct  8    PTRNGGGLGAGSESLRYLVELARAAEELGFDGVWLAEHHGG-------------------  48

Query  93   WPVNEPLAVVSAMAAATKNIGFGVTVTTTYEQ-PYHLARRLSTVDHLSKGRY--------  143
                +P  V++A+AAAT  I  G  V     + P  LA + +T+DHLS GR+        
Sbjct  49   PGGPDPFVVLAALAAATSRIRLGTAVVPLPTRHPAVLAEQAATLDHLSGGRFDLGLGTGG  108

Query  144  -----------HDDRYAIAEEYVRVTYKLWESSWRDDAVVLDRERGIYTDPSRVREINHE  192
                       HD+RYA   E++ V  +LW                      R   ++ E
Sbjct  109  PAVEFRRFGVDHDERYARLREFLEVLRRLW----------------------RGEPVDFE  146

Query  193  GKYFNVPGPHLCQPSPQRTPVILQAGTSKAGKTFAAQHAEAIFVAGHSPV-VVAKNIAEI  251
            G++F + G  L     Q  PV + A +S A    AA+HA+ + + G +P    A+ I  +
Sbjct  147  GEFFTLDGAFLLPRPVQGIPVWV-AASSPAMLELAARHADGLLLWGFAPPAAAAELIERV  205

Query  252  RATAQARFGRDPKSIKFLALLCPVLGRTEEEAREKFQYYRSLGSIDGALALFGGWTGINL  311
            RA A A  GRDP  I+  A L  ++  TEEEAR +            A AL  G     L
Sbjct  206  RAGA-AEAGRDPADIRVGASLTVIVADTEEEARAE------------ARALIAG-----L  247

Query  312  DTYGDDEELRHVESNAIRSAVEGWSKSTPGVAKWTKSTVGQHITVGGLGATPVGTPAQVA  371
              Y  D E     + A     E  +    G A      + +   +       VGTP QVA
Sbjct  248  PFYRMDSEGAGRLAEAREIGEEYDAGDWAGAADAVPDELVRAFAL-------VGTPEQVA  300

Query  372  DEMERWVREADVDG  385
            + +  +  EA VD 
Sbjct  301  ERLAAYA-EAGVDH  313



Lambda      K        H        a         alpha
   0.317    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00008131

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00003080

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family. Th...  206     3e-63


>CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family.  This family 
includes both bacterial phospholipase C enzymes EC:3.1.4.3, 
but also eukaryotic acid phosphatases EC:3.1.3.2.
Length=348

 Score = 206 bits (526),  Expect = 3e-63, Method: Composition-based stats.
 Identities = 110/403 (27%), Positives = 167/403 (41%), Gaps = 83/403 (21%)

Query  39   IKNVVILVMENRSFDNLLGGQK-LKGLENPVN-------TGPYCNPYNLTDPSQGVACSA  90
            IK+VVI++ ENRSFD+  G    ++G ++P         T    NP  ++ P +    + 
Sbjct  1    IKHVVIIMQENRSFDHYFGTLSGVRGFDDPSPLFQQDGVTKQALNPAGVSAPYRLDT-TF  59

Query  91   AKDFDSITNDPDHAIYGNNIEFYGTFNPDNTQIAEGKLVPHNQGFVHEQVRKYGAKVNKT  150
                  +  DP H+    + ++ G                   GFV              
Sbjct  60   GPASGYVVPDPGHSWQAIHEQWNGG---------------RMDGFVAAAGS---------  95

Query  151  VLATQVMNYYTEEQVPVLTSLVQNYLTFNHWHSDIPGNTNPNRAALVSGTSLG--HGLND  208
               TQVM Y+  + +P L  L Q +   + +   +PG T PNR  LVSGTS    HG   
Sbjct  96   ---TQVMGYFDRQDIPFLWLLAQEFTLCDRYFCSVPGPTQPNRLYLVSGTSDPGSHGGPS  152

Query  209  AAFTK----HEFPQRSIFQQLTETGHSWINYVDPAGGTGPDAGYFNWTYATNNQ-----D  259
                       FP  +I  +L++ G SW  Y +           FN+    +N      D
Sbjct  153  LVDPNTTPVKGFPWPTIPDRLSQAGISWGIYQE--AFLDNHHQPFNYYVRKHNPLPSFRD  210

Query  260  KIQ-------PLAKFYTDAAAGALPELAYLNPSCCGVGTTSMHPAGLISDGEAFIKKVYD  312
             +          + F  D   G LP+++++ P+    G    HP   I+ G+ +IK V +
Sbjct  211  ALHQYGLAPHYFSDFKKDVKNGKLPQVSWVIPN----GANDEHPGHDIAAGQKWIKNVLE  266

Query  313  ALRAGPQWEETLFILTFDESGGFHDHVSAPLAPRPDNLTFTLSTPSGEDYTFPFDRLGGR  372
            AL + PQW +TL I+T+DE+GGF+DHV  P AP P              Y      LG R
Sbjct  267  ALLSSPQWNKTLLIVTYDENGGFYDHVPPPKAPVPG---------IPGPY-----GLGNR  312

Query  373  IPTLLISPWVAKAQVEQKGKNAHGETVSYSAASILRTLGYLWD  415
            +PTL+ISPW     V+           ++   S+LR +   + 
Sbjct  313  VPTLVISPWAKPGTVDHT---------TFDHTSVLRFIEKRFG  346



Lambda      K        H        a         alpha
   0.317    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00003081

Length=304


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00003082

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00003083

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00003084

Length=866


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1106781294


Query= TCONS_00003085

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459948 pfam00815, Histidinol_dh, Histidinol dehydrogenase         543     0.0  


>CDD:459948 pfam00815, Histidinol_dh, Histidinol dehydrogenase.  
Length=410

 Score = 543 bits (1403),  Expect = 0.0, Method: Composition-based stats.
 Identities = 187/402 (47%), Positives = 256/402 (64%), Gaps = 4/402 (1%)

Query  22   DVGAIVKGVIDDIRANGDTAVRKYSERFDKWSPAS-FRLSREEIEASIAACPPQTIEDIE  80
            +V   V+ +I+D+R  GD A+ +Y+E+FD        R+S EEIEA+ A   P+  E IE
Sbjct  10   EVEETVREIIEDVRERGDAALLEYTEKFDGVELGVLLRVSEEEIEAAYAKLDPELKEAIE  69

Query  81   QVQRNVRAFAKAQRDSIKDFEYEIHPGVYLGQKNLPIQTVGAYIPGGRYPLLASAHMTIL  140
                N+RAF +AQ+ S + + YE  PGV LGQ+  PI+ VG Y+PGG  P  +S  M  +
Sbjct  70   LAAENIRAFHEAQKPS-ELWVYETEPGVVLGQRVRPIERVGLYVPGGTAPYPSSVLMNAI  128

Query  141  TAKEAGVPKVIGCTPPIA-GKIPHATIAAMHLAGADEIYVLGGVQAIAAMALGTETMDKV  199
             AK AGV +++ CTPP   GKI  A +AA HLAG DEIY +GG QAIAA+A GTET+ KV
Sbjct  129  PAKVAGVKEIVMCTPPQKDGKINPAILAAAHLAGVDEIYKVGGAQAIAALAYGTETIPKV  188

Query  200  DFIAGPGNAFVAEAKRQLFGEIGIDLFAGPTEILIVADETANPFTVATDILSQAEHGPDS  259
            D I GPGN +V  AKR +FG++GID+ AGP+E+L++ADETANP  VA D+LSQAEH PD+
Sbjct  189  DKIVGPGNIYVTAAKRLVFGDVGIDMPAGPSEVLVIADETANPEFVAADLLSQAEHDPDA  248

Query  260  PAVIITTSEAVGRESMRIITELLKNLSTAELAGTSWERFGEVIVVDSIDEAWKLADEYAS  319
             A+++TTSE +       +   L  L   E+A  S E +G +I+VD ++EA +L++EYA 
Sbjct  249  QAILVTTSEELAEAVEAEVERQLATLPRKEIARKSLENYGAIILVDDLEEAIELSNEYAP  308

Query  320  EHVQILTKEPRQALRNMNAYGALFLGEKTCVSYGDKVIGTNHVLPTKKAARFTGGLWVGK  379
            EH+++ T++P   L  +   G++FLGE T  S GD   G NHVLPT   ARF  GL V  
Sbjct  309  EHLELQTEDPEALLEKIRNAGSIFLGEYTPESLGDYAAGPNHVLPTSGTARFYSGLSVDD  368

Query  380  YLRTVTYQEVTSRQASGELGRLCGRAARAENFEGHARSGDLR  421
            +L+  + QE  S++   ELG      A AE  E HA +  +R
Sbjct  369  FLKKSSVQEY-SKEGLKELGPAVETLAEAEGLEAHANAVRVR  409



Lambda      K        H        a         alpha
   0.318    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00008132

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459948 pfam00815, Histidinol_dh, Histidinol dehydrogenase         409     2e-144


>CDD:459948 pfam00815, Histidinol_dh, Histidinol dehydrogenase.  
Length=410

 Score = 409 bits (1055),  Expect = 2e-144, Method: Composition-based stats.
 Identities = 138/286 (48%), Positives = 186/286 (65%), Gaps = 2/286 (1%)

Query  1    MTILTAKEAGVPKVIGCTPPIA-GKIPHATIAAMHLAGADEIYVLGGVQAIAAMALGTET  59
            M  + AK AGV +++ CTPP   GKI  A +AA HLAG DEIY +GG QAIAA+A GTET
Sbjct  125  MNAIPAKVAGVKEIVMCTPPQKDGKINPAILAAAHLAGVDEIYKVGGAQAIAALAYGTET  184

Query  60   MDKVDFIAGPGNAFVAEAKRQLFGEIGIDLFAGPTEILIVADETANPFTVATDILSQAEH  119
            + KVD I GPGN +V  AKR +FG++GID+ AGP+E+L++ADETANP  VA D+LSQAEH
Sbjct  185  IPKVDKIVGPGNIYVTAAKRLVFGDVGIDMPAGPSEVLVIADETANPEFVAADLLSQAEH  244

Query  120  GPDSPAVIITTSEAVGRESMRIITELLKNLSTAELAGTSWERFGEVIVVDSIDEAWKLAD  179
             PD+ A+++TTSE +       +   L  L   E+A  S E +G +I+VD ++EA +L++
Sbjct  245  DPDAQAILVTTSEELAEAVEAEVERQLATLPRKEIARKSLENYGAIILVDDLEEAIELSN  304

Query  180  EYASEHVQILTKEPRQALRNMNAYGALFLGEKTCVSYGDKVIGTNHVLPTKKAARFTGGL  239
            EYA EH+++ T++P   L  +   G++FLGE T  S GD   G NHVLPT   ARF  GL
Sbjct  305  EYAPEHLELQTEDPEALLEKIRNAGSIFLGEYTPESLGDYAAGPNHVLPTSGTARFYSGL  364

Query  240  WVGKYLRTVTYQEVTSRQASGELGRLCGRAARAENFEGHARSGDLR  285
             V  +L+  + QE  S++   ELG      A AE  E HA +  +R
Sbjct  365  SVDDFLKKSSVQEY-SKEGLKELGPAVETLAEAEGLEAHANAVRVR  409



Lambda      K        H        a         alpha
   0.317    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00003086

Length=707


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905521060


Query= TCONS_00003087

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            76.7    1e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 76.7 bits (189),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 60/314 (19%), Positives = 107/314 (34%), Gaps = 58/314 (18%)

Query  118  ALMQGVSCLFWVPLLNKFGRRPVYISAFILYFFMILGAGLSKTYAGELTTRTILGIGAGA  177
            +L   ++      L ++FGRR V +   +L+   +L    + +    L  R + G+GAGA
Sbjct  42   SLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGA  101

Query  178  GECLAPVTIADVFYLHQRGYGMAIYNAALSAGVAFGIIISGLVTIKHDWRTIYWVGCALV  237
                A   IAD F   +RG  + + +A    G A G ++ GL+     WR  + +  A++
Sbjct  102  LFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLI-LAIL  160

Query  238  GALTVVVVLFFPETAYRRVGNPLVERAVEIQKLSDSNNLESASVPPIPPKVSYWRSLRFW  297
              L  V++L        +   P  E                                   
Sbjct  161  SLLAAVLLLLPRPPPESKRPKPAEEA----------------------------------  186

Query  298  SGETYTDESFWRMFVRPFGLILIPPIFWATIVMSVTIGFLVAVVSNFASAFSTTYGFEAW  357
                          +  +  +L  P+ W  ++  +  GF    +  +   +    G  A 
Sbjct  187  ----------RLSLIVAWKALLRDPVLWL-LLALLLFGFAFFGLLTYLPLYQEVLGLSAL  235

Query  358  QSGLCFIAGMLGCFLGTFAGGPFSDWVADYFTRRNGGIREPEMRLPAIIPSVIAAPLSLV  417
             +GL    G L   +G    G  SD +                RL   +  +I A L L+
Sbjct  236  LAGLLLGLGGLLGAIGRLLLGRLSDRLG------------RRRRLLLALLLLILAALGLL  283

Query  418  LYGCGIANGWHWMV  431
            L    +++ W  + 
Sbjct  284  LLSLTLSSLWLLLA  297



Lambda      K        H        a         alpha
   0.327    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00003089

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  87.3    4e-21


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 87.3 bits (217),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 54/155 (35%), Gaps = 34/155 (22%)

Query  32   PLAVVKATCLEDIVLAVKLAKEKKCRVAVRSGGHSWAAWSVRDESILIDLGDYKH-LEVD  90
            P AVV     E++   V+LA E    V  R GG S    +V+   I++DL      LE+D
Sbjct  1    PAAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGGAVQTGGIVLDLSRLNGILEID  60

Query  91   AEKRMARTSPSMTGKEINGKLIKEYGLMFP-----------------GGHCPDVGLGGFL  133
             E   A     +T  ++  + +   GL+                                
Sbjct  61   PEDGTATVEAGVTLGDLV-RALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYG-------  112

Query  134  LQGGMGWVCRGWGWACERVKAVDVVTAEGELLHCN  168
                       +G   + V  ++VV A+GE++   
Sbjct  113  --------SEKYGLTRDNVLGLEVVLADGEVVRLG  139



Lambda      K        H        a         alpha
   0.320    0.136    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00003088

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  87.3    3e-21


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 87.3 bits (217),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 54/155 (35%), Gaps = 34/155 (22%)

Query  32   PLAVVKATCLEDIVLAVKLAKEKKCRVAVRSGGHSWAAWSVRDESILIDLGDYKH-LEVD  90
            P AVV     E++   V+LA E    V  R GG S    +V+   I++DL      LE+D
Sbjct  1    PAAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGGAVQTGGIVLDLSRLNGILEID  60

Query  91   AEKRMARTSPSMTGKEINGKLIKEYGLMFP-----------------GGHCPDVGLGGFL  133
             E   A     +T  ++  + +   GL+                                
Sbjct  61   PEDGTATVEAGVTLGDLV-RALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYG-------  112

Query  134  LQGGMGWVCRGWGWACERVKAVDVVTAEGELLHCN  168
                       +G   + V  ++VV A+GE++   
Sbjct  113  --------SEKYGLTRDNVLGLEVVLADGEVVRLG  139



Lambda      K        H        a         alpha
   0.320    0.135    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00003090

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  198     4e-64
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  168     7e-53


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 198 bits (506),  Expect = 4e-64, Method: Composition-based stats.
 Identities = 84/239 (35%), Positives = 128/239 (54%), Gaps = 10/239 (4%)

Query  15   SSSGIGAAIVRELSSRGANTVVNYPFPSLRAEADTLVASLPSPAIAVEADMSRADAPQKL  74
            + SGIG AI R L+  GA  V+     +L    + L   L +  +    D++  +  + L
Sbjct  4    NESGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVL--PCDVTDEEQVEAL  61

Query  75   VDAAVSQWGRVDIVVNSVALAVN--KPFEEQTLEDWDTLVNINGRGTFLLTQASLKYLTK  132
            V AAV ++GR+DI+VN+   A     PF + + ED+D  +++N    FLL +A+L  + +
Sbjct  62   VAAAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLMKE  121

Query  133  GSGRIVNIASISARGPPPNQTIYAGTKGMVDSFTKCWAKELPPKYGCTVNAVSPGPTMTE  192
            G G IVN++SI A    PN   Y   K  +++ T+  A EL P+ G  VNA+SPGP  T 
Sbjct  122  G-GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPR-GIRVNAISPGPIKTL  179

Query  193  GFAAAG-KEQMKILQPIIDQTPVGPRMAQPDEIAYAVAFLCEERARWINGAHLIASGGL  250
              AA+G     ++L     + P+G R+  P+E+A A AFL  + A +I G  L   GG 
Sbjct  180  --AASGIPGFDELLAAAEARAPLG-RLGTPEEVANAAAFLASDLASYITGQVLYVDGGY  235


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 168 bits (427),  Expect = 7e-53, Method: Composition-based stats.
 Identities = 71/195 (36%), Positives = 112/195 (57%), Gaps = 2/195 (1%)

Query  8    KVAIVSGSSSGIGAAIVRELSSRGANTVVNYPFPSLRAEADTLVASLPSPAIAVEADMSR  67
            KVA+V+G+SSGIG AI + L+  GA  V+              + +L   A+ ++ D++ 
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  68   ADAPQKLVDAAVSQWGRVDIVVNSVALAVNKPFEEQTLEDWDTLVNINGRGTFLLTQASL  127
                + LV+ AV + GR+DI+VN+  +    PF E + EDW+ ++++N  G F LT+A L
Sbjct  61   RAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVL  120

Query  128  KYLTKGS-GRIVNIASISARGPPPNQTIYAGTKGMVDSFTKCWAKELPPKYGCTVNAVSP  186
              + KGS GRIVNI+S++   P P  + Y+ +K  V  FT+  A EL P +G  VNAV+P
Sbjct  121  PAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAP-HGIRVNAVAP  179

Query  187  GPTMTEGFAAAGKEQ  201
            G   T+      +++
Sbjct  180  GGVDTDMTKELREDE  194



Lambda      K        H        a         alpha
   0.316    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00003091

Length=429


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 519925656


Query= TCONS_00003092

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461110 pfam03959, FSH1, Serine hydrolase (FSH1). This is a fa...  98.1    1e-25


>CDD:461110 pfam03959, FSH1, Serine hydrolase (FSH1).  This is a family of 
serine hydrolases.
Length=208

 Score = 98.1 bits (245),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 32/218 (15%)

Query  4    ETKPAIICLHGHGSNGEIFQAQSQNLTRVLSPR-FRFVFLDSPITTAQTGVGVPPYYA--  60
              K  ++CLHG G +GEIF+A++  L ++L      FV+LD+P         +P   +  
Sbjct  1    SKKKKVLCLHGFGQSGEIFRAKTGALRKLLKKLGVEFVYLDAPF-ELAEPADLPGSESEK  59

Query  61   ----HIKPYRRWHQDRNTIGLFDVTAEDVERERRAVRDSLKDVIERERRNGPGAGVVGVM  116
                  +PYR W    +    +    E +        D ++D I   + NGP     G++
Sbjct  60   DEGEDDEPYRAWFFGDDDTNEYLGLDESL--------DYVRDYI---KENGP---FDGIL  105

Query  117  GFSQGTRVATAVCLDSELGR-----DIRFAIMICGICPSLALSAAETQVSRPLDIVPVHV  171
            GFSQG  +A  +    E G       ++FAI+  G  P       E     P+    +HV
Sbjct  106  GFSQGAALAAILASLLEEGLPLSHPPLKFAILFSGFRP-RPPIYQEYYSEDPIQTPSLHV  164

Query  172  QGSGDPWL--AKGTRLSKQYFNQRLATVVRFKGRHEIP  207
             G  D  +   +  +L++   N    TV+   G H +P
Sbjct  165  IGELDTVVPEERSEKLAEACKNSP--TVLEHPGGHFVP  200



Lambda      K        H        a         alpha
   0.321    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00003093

Length=2397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  221     1e-65
CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  175     2e-50
CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          131     2e-33
CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  117     3e-31
CDD:434191 pfam14765, PS-DH, Polyketide synthase dehydratase. Thi...  92.1    2e-20
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  83.6    2e-19
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  66.8    1e-13
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  67.6    7e-13
CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  64.4    6e-12
CDD:465059 pfam16197, KAsynt_C_assoc, Ketoacyl-synthetase C-termi...  60.3    4e-11


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 221 bits (565),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 97/214 (45%), Positives = 124/214 (58%), Gaps = 5/214 (2%)

Query  39   FNLDRFYHPTGSHHGTTNIRQAYLLSEDVRAFDAKFFSVPPGDAEAIDPQQRLLLEVTYE  98
            ++ D+ Y P     G    +   L  +D+  FD  FF + P +AE +DPQQRLLLE  +E
Sbjct  40   WDPDKLYDPPSRIAGKIYTKWGGL--DDIFDFDPLFFGISPREAERMDPQQRLLLEAAWE  97

Query  99   ALESSGHTLADLSNSNTGAFVGLMSQDYFALNGQDVDSVPTYA---ASGTAASNASSRLS  155
            ALE +G T   L  S TG F+G    DY AL   D D  P      A GT  S  + R+S
Sbjct  98   ALEDAGITPDSLDGSRTGVFIGSGIGDYAALLLLDEDGGPRRGSPFAVGTMPSVIAGRIS  157

Query  156  YFFNWHGPSMAIDTACSSNLVAVNEAVQALRNGTSRVAVACGTNLCLSAFTFITLSKLSM  215
            YF    GPS+ +DTACSS+LVA++ AVQ++R+G + VA+A G NL L+   F   S   M
Sbjct  158  YFLGLRGPSVTVDTACSSSLVAIHAAVQSIRSGEADVALAGGVNLLLTPLGFAGFSAAGM  217

Query  216  LSPTSRCHMWDADADGYARGEGVACVVLKTLSDA  249
            LSP   C  +D  ADG+ RGEGV  VVLK LSDA
Sbjct  218  LSPDGPCKAFDPFADGFVRGEGVGAVVLKRLSDA  251


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 175 bits (445),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 66/177 (37%), Positives = 98/177 (55%), Gaps = 5/177 (3%)

Query  1928  TYWLAGLTGDTGRSLADFMIAHNARNIVLSSRTPTVYED---WVEWHKSRGVSVRYFGGD  1984
             TY + G  G  GR LA ++    AR++VL SR+     D    +   ++RGV V     D
Sbjct  2     TYLITGGLGGLGRELARWLAERGARHLVLLSRSAAPRPDAQALIAELEARGVEVVVVACD  61

Query  1985  ITSFQSVKQIHDAIKESMPPIGGVANGAMVLRDSSFMKVSFDDFQAVLGPKVKGTINIDR  2044
             ++   +V  +   IK   PPI GV + A VLRD+    ++ +D++ VL PKV GT N+  
Sbjct  62    VSDPDAVAALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLHE  121

Query  2045  LFSDPNQLLDWFIGFSSVAGTVGNPGQSGYTAGSCFIKALVDRRRKQGLAGSVIDIT  2101
                D    LD+F+ FSS+AG +G+PGQ+ Y A + F+ AL + RR QGL  + I+  
Sbjct  122   ATPDEP--LDFFVLFSSIAGLLGSPGQANYAAANAFLDALAEYRRSQGLPATSINWG  176


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 131 bits (331),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 84/289 (29%), Positives = 117/289 (40%), Gaps = 48/289 (17%)

Query  526  IFTGQGAQWQGMGSQLISSIP--------------------------TTPVGKAS---LS  556
            +F+GQG+QW GMG QL+ + P                            P G        
Sbjct  3    VFSGQGSQWAGMGMQLLKTSPAFAAVIDRADEAFKPQYGFSVSDVLRNNPEGTLDGTQFV  62

Query  557  QPLCTAVQVILVDMLRAAGVKFQAVVGHSSGEIAAAYAAGFISAWDAIRIADYRGFYAEM  616
            QP   A+Q+ L  +L++ GV+  AVVGHS GE AAA  AG +S  +A+  A  R      
Sbjct  63   QPALFAMQIALAALLQSYGVRPDAVVGHSLGEYAAAVVAGALSPEEALLAAVLRSRLMMQ  122

Query  617  AAAPGGEKGAMLAAGTSFEDASDLCQLDDFAGRICVAAHNSPSSVTLSGDIDAIALARRV  676
             A PGG    M A   S E+       D     +  A  NSP SV +SG  +A+      
Sbjct  123  LAGPGG----MAAVELSAEEVEQRWPDD-----VVGAVVNSPRSVVISGPQEAVRELVER  173

Query  677  LEEEEKFARRLKVDTAYHSTHMHKCSVPYLTALRNCNIQVQQPGPDAPQWFSSVRNGQVI  736
            + +E   A    V+ A HS  M         AL +    +    P  P   SS       
Sbjct  174  VSKEGVGALVENVNYAVHSPQM----DAIAPALLSALADIAPRTPRVPFI-SSTSIDP--  226

Query  737  SSMESLDSQYWVDNMVQPELFCPAVQTCLKYVDKAINCVVEVGPHPALQ  785
            S   +L ++YWV N+  P  F  A+ +     +      +E+ PHP L 
Sbjct  227  SDQRTLSAEYWVRNLRSPVRFAEAILSAA---EPGPLVFIEISPHPLLL  272


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 117 bits (296),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 53/118 (45%), Positives = 64/118 (54%), Gaps = 13/118 (11%)

Query  258  AVTREVGVNHDGRTKGLTMPSAKAQAALIRNTYARAGLDPTKEADRCQYFEAHGTGTKAG  317
            AV +   VNHDGR  GLT P+ + QA  IR   A AG+DP    +   Y EAHGTGT  G
Sbjct  2    AVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDP----EDVDYVEAHGTGTPLG  57

Query  318  ---------AFFPQSDSEGELFVGSIKAVIGHTEGTAGLAGLMKACLALRNATFPPNL  366
                       F     +  L +GS+K+ IGH EG AG AGL+K  LALR+   PP L
Sbjct  58   DPIEAEALKRVFGSGARKQPLAIGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTL  115


>CDD:434191 pfam14765, PS-DH, Polyketide synthase dehydratase.  This is the 
dehydratase domain of polyketide synthases. Structural analysis 
shows these DH domains are double hotdogs in which the 
active site contains a histidine from the N-terminal hotdog 
and an aspartate from the C-terminal hotdog. Studies have 
uncovered that a substrate tunnel formed between the DH domains 
may be essential for loading substrates and unloading products.
Length=296

 Score = 92.1 bits (229),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 89/255 (35%), Gaps = 35/255 (14%)

Query  890   ADGAREEWGPVKSIDLFDLEIHKAIASHDSTGTELLTSMTKVSALDTEWEEITADFSAYS  949
              + AR+ +G   ++ L D+ I KA+   +    E+ TS+T        W     +F  +S
Sbjct  51    LEAARQLFGGSGAVALRDVSILKALVLPEDDPVEVQTSLTPEEDGADSW----WEFEIFS  106

Query  950   TISKDAANLGLNCCGRVRVLLGEGED--SPSHFSPRLPPLGKLTAVDVDSFYKILRDDFG  1007
               +       L+  G VR+  GE            R        +V    FY+ L    G
Sbjct  107   -RAGGGWEWTLHATGTVRLAPGEPAAPVDLESLPARCAQPADPRSVSSAEFYERLAAR-G  164

Query  1008  FGYEGPFRALTNMSRKTGFATGTVRC-ERFDDSETSLLFHPGMLDSALQGLNAA------  1060
               Y   F+ L  + R  G A    R  E     E+  L HP +LD+ALQ L AA      
Sbjct  165   LFYGPAFQGLRRIWRGDGEALAEARLPEAAAGGESPYLLHPALLDAALQLLGAALPAEAE  224

Query  1061  -----------------HSAPGDDRLWTIIDCNITDPRDTHITGDVEVFSEGFREKIIEV  1103
                               S P  + LW  +   +       I GD+ +  E  R  +  +
Sbjct  225   HADQAYLPVGIERLRIYRSLPPGEPLW--VHARLERRGGRTIVGDLTLVDEDGRV-VARI  281

Query  1104  EGLTFSPFASATVEN  1118
             EGL         +  
Sbjct  282   EGLRLRRVEREALLR  296


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 83.6 bits (207),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 39/106 (37%), Positives = 55/106 (52%), Gaps = 12/106 (11%)

Query  1284  LEVGAGTGGATKAILEKIGYSYASYTYTDISSAFFDHDAGHFQS----HASKMIFKALDI  1339
             LE+G GTG   +A+LE +      YT  DIS A  +       +    +A ++    LD+
Sbjct  1     LEIGCGTGTLLRALLEALPG--LEYTGLDISPAALEAARERLAALGLLNAVRVELFQLDL  58

Query  1340  TKDPAGQGFIPQSYDVIVASNVLHATESLRSALEHTRRLLRPGGYL  1385
              +        P S+DV+VASNVLH     R+ L + RRLL+PGG L
Sbjct  59    GELD------PGSFDVVVASNVLHHLADPRAVLRNIRRLLKPGGVL  98


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 66.8 bits (164),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 9/102 (9%)

Query  1284  LEVGAGTGGATKAILEKIGYSYASYTYTDISSAFFDHDAGHFQSHASKMIFKALDITKDP  1343
             L++G GTG  T A+  + G   A  T  D+S    +            + F   D    P
Sbjct  2     LDLGCGTGRLTLALARRGG---ARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAEDLP  58

Query  1344  AGQGFIPQSYDVIVASNVLH--ATESLRSALEHTRRLLRPGG  1383
                 F   S+D++V+S VLH      L +AL    R+L+PGG
Sbjct  59    ----FPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 67.6 bits (166),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 38/149 (26%), Positives = 66/149 (44%), Gaps = 10/149 (7%)

Query  1935  TGDT---GRSLADFMIAHNARNIVLSSRTPTVYEDWVEWHKSRGVSVRYFGGDITSFQSV  1991
             TG +   GR++A  +    A+ +VL  R+    E   +   + G    +  GD+T    V
Sbjct  6     TGASSGIGRAIAKRLAKEGAK-VVLVDRSEEKLEAVAKELGALGGKALFIQGDVTDRAQV  64

Query  1992  KQIHDAIKESMPPIGGVANGAMVLRDSSFMKVSFDDFQAVLGPKVKGTINIDRLFSDPNQ  2051
             K + +   E +  +  + N A +     F ++S +D++ V+   + G  N+ R       
Sbjct  65    KALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVLP--A  122

Query  2052  LLDWFIG----FSSVAGTVGNPGQSGYTA  2076
             ++    G     SSVAG V  PG S Y+A
Sbjct  123   MIKGSGGRIVNISSVAGLVPYPGGSAYSA  151


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 64.4 bits (157),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 38/192 (20%), Positives = 57/192 (30%), Gaps = 33/192 (17%)

Query  1249  YLERYYVDAIGFQLLNFLIAGVMEPLCLKSPRMNFLEVGAGTGGATKAILEKIGYSYASY  1308
               ER   D +   L                     L+ G GTG   + +L   G+S    
Sbjct  4     QRERLLADLLLRLLPK------------LPSPGRVLDFGCGTGIFLR-LLRAQGFSVTGV  50

Query  1309  TYTDISSAFFDHDAGHFQSHASKMIFKALDITKDPAGQGFIPQSYDVIVASNVLHATESL  1368
                D S    +            + F   D  +     G     +DVIVA  VL      
Sbjct  51    ---DPSPIAIERAL-------LNVRFDQFDEQEAAVPAG----KFDVIVAREVLEHVPDP  96

Query  1369  RSALEHTRRLLRPGGYLVMVEIIRNDVMRHGLVMGGLPGWWVGENDGRYGGPSITLDQWH  1428
              + L     LL+PGG L++   + +D          L  W              +     
Sbjct  97    PALLRQIAALLKPGGLLLLSTPLASDEADR-----LLLEWPYLRPRNG-HISLFSARSLK  150

Query  1429  KMLRETGFSGIE  1440
             ++L E GF  + 
Sbjct  151   RLLEEAGFEVVS  162


>CDD:465059 pfam16197, KAsynt_C_assoc, Ketoacyl-synthetase C-terminal extension. 
 KAsynt_C_assoc represents the very C-terminus of a 
subset of proteins from the keto-acyl-synthetase 2 family. It 
is found in proteins ranging from bacteria to human.
Length=111

 Score = 60.3 bits (147),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 17/117 (15%)

Query  372  NPDLELFT-SHLRVPTANQPWPEF---VNSFGLGGTNAHCILETYNPPTASDPVIEIDMA  427
            NPD+       L+V T   PWP     VNSFG GG NAH IL++   P            
Sbjct  2    NPDIPALLDGRLKVVTEPTPWPGGIVGVNSFGFGGANAHVILKSNPKPKIPPE-------  54

Query  428  ASGTCCIPS--VFSAASDRSLATLLQSTLKFMDENTDVNMSGLAYNLSTKRSALQRR  482
                  +P   + S  ++ ++  LL+     +D+   +++  L    S   S    R
Sbjct  55   --SPDNLPRLVLLSGRTEEAVKALLEKLENHLDDAEFLSL--LNDIHSLPISGHPYR  107



Lambda      K        H        a         alpha
   0.318    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2979020160


Query= TCONS_00003094

Length=351


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00003096

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00008134

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.126    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00003100

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00003101

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00003102

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.145    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00003104

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00003105

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.144    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00003107

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00003108

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00003109

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00003110

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00003111

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00008135

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00003112

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00003113

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00003114

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00003115

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00003120

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00008136

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00003116

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00008137

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00003117

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00003118

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00003119

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00008138

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00003122

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00008139

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00003126

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00003124

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.146    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00003123

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00003125

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00003127

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00008140

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00003128

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00003129

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00003130

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00003133

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00003134

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00003135

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00003137

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.527    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00003136

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.527    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00003138

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.527    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00008141

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00008142

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00003140

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00003141

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00003142

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00003143

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00003145

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00003146

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00003147

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00003148

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.116    0.313    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00003149

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00003150

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00003151

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00003152

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00003153

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00003156

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00003158

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00003159

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00008145

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00003160

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.138    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00008146

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00003161

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00008147

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00003163

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00003162

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00003165

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.138    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00003164

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00003166

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00003168

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00003169

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00008149

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00003170

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00008150

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00008151

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00003171

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00003173

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00008152

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00003175

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00008153

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00003176

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00003177

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00003178

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00003179

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003180

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00003181

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00003182

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00003183

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00008154

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00008156

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00008155

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00003184

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00003187

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00008158

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00003188

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00008159

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00003186

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00003190

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00008160

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00003185

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00003191

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00003192

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00008161

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00003193

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00003194

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00008162

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00008163

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00003196

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00003197

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00003199

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00003200

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00003201

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00003204

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00003203

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00008164

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00003202

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00003205

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00008166

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00003207

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00003206

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00003209

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00008169

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00008168

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00008170

Length=215


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00008171

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00003210

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00008172

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00003212

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00003211

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00008173

Length=215


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00008174

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00003208

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00003213

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00008175

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00003215

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00003216

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00008178

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00003217

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00003218

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.153    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00008179

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00003220

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00003219

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00003221

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00008180

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00003222

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00008182

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00008181

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00003223

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00008183

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00008184

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00008185

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00003225

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00003224

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00003226

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00003227

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.144    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00003228

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00008186

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00003229

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00003230

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00003231

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00008187

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00003233

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00008188

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00003232

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00003234

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00003236

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00003235

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00003237

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00003238

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00003239

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00003240

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00003241

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00008191

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00003242

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00003243

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00008192

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00008193

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00008194

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00003244

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00003246

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00003245

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00003247

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00008195

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00003248

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00008196

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00008197

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00003249

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00003250

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00003251

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00008200

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00003253

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00008201

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00003254

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00008202

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00003252

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00008203

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00003257

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00003255

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00003256

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00008205

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00003258

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00003259

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00003261

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00008208

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00003262

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00003264

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00003263

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00008209

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00008211

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00003265

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00003267

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00008212

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00003268

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00008213

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00003266

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00003269

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00003270

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00003271

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00008214

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003272

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003273

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00008215

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003274

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003275

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00003276

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00003277

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00008216

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00003278

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00008217

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.142    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00003280

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.142    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00003281

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00003285

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00003282

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00008218

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00003284

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00003283

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00008219

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00003287

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.146    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00008220

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.146    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00003288

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.146    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00003289

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00008221

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00008222

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003290

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00008223

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003291

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00003292

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00003295

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00003293

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00008224

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00003294

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00003296

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00003297

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00003300

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003299

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003298

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00008225

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00008226

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003301

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00008227

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00008228

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003302

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003303

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00008230

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00008229

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00003304

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00003305

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00003306

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00008231

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00003308

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00008233

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00008234

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00003310

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00008235

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00003312

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00003311

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00003313

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00003314

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.124    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00003315

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00003316

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00008236

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00003317

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00003318

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00008237

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00008238

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00003319

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00003320

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00003321

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.125    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00003322

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00003323

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00008240

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00003324

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00003325

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00003326

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00008241

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00008242

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00003327

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00003328

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00003329

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00003330

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00003332

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00008243

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00003331

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00008244

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00003334

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00008246

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00003336

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00008248

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00003337

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00003344

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00003338

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00008249

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00003339

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.317    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00003340

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00003341

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00008250

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00008253

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.116    0.290    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00003345

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00003347

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00003350

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00003349

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00003348

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00008254

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00008255

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00003352

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00003351

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00008256

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00003353

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00008257

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00008259

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.119    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00008258

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.119    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00008260

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.119    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00003355

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.119    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00003354

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.119    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00003356

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.119    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00003357

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00003358

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00003361

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00008261

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00003359

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00003360

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00003362

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00008262

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.123    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00008263

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00003363

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00003364

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00003365

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00003366

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00003367

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00003368

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00003370

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00003369

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00008265

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00003372

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00003373

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00003374

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00008266

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00003376

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00003378

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00003377

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00003379

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00003375

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00003380

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003381

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00003382

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00003383

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00003384

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00003385

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00003386

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00008268

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00003387

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00003389

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00008269

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00003391

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00003390

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00003392

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00008270

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00003393

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00003394

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00008272

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00003388

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00003395

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00003396

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00003397

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00003398

Length=292


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.116    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00003399

Length=292


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.116    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00003400

Length=292


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.116    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00008273

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00008274

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00003401

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00003402

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00003403

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.142    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00003404

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00003405

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00003407

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00003406

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00003409

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00003408

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00008275

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00003417

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00003411

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00003410

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00008276

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00003412

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00003413

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00003414

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00003415

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00008277

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00003416

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00008278

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00008279

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00003418

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00003419

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00008280

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00003420

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00003421

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00003422

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00003423

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00003424

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.148    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00008281

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00003426

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00003427

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00008283

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00003428

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00003429

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00003430

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00003433

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00008285

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00008286

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00008287

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00008288

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00008289

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00003432

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00003434

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00008290

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00008291

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00003436

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00003437

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00008292

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00003438

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.144    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00008294

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.144    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00008295

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00003440

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00003442

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00003441

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00008296

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00008297

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00008298

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00003443

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00003444

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00003445

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00003446

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00008300

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00008301

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00008303

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00008302

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.150    0.534    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00008304

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00008305

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00008306

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00003451

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00003448

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.150    0.534    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00003450

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00003449

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00008307

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.150    0.534    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00008309

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00008310

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00003454

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00008312

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00003453

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00003455

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00003456

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00008313

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00008314

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00008315

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00008316

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00003457

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00003458

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00003459

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00008317

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00003461

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00003460

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00008318

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00003462

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00003463

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00003464

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00003467

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.120    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00008320

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00003468

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00003469

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00008324

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00008325

Length=368


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00008326

Length=368


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00003472

Length=368


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00003470

Length=368


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00003473

Length=368


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00003471

Length=368


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00008327

Length=368


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00003474

Length=368


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00003475

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00003477

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.143    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00003476

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00003478

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00008328

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00008331

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00008330

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00008329

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00008332

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00003480

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00008333

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00003481

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00003482

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00008334

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00003483

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00008335

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00008336

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00008337

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00008338

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.121    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00003486

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00008339

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00003487

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00003488

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00008340

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00008341

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00003489

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00008342

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.120    0.311    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00003490

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00008343

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00008344

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.120    0.311    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008345

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.121    0.320    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00003491

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00003493

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00008346

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00008347

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00003495

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00003496

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00003497

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00003498

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00008348

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00003499

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.118    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00003503

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00003504

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00003505

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00003506

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00003508

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00008352

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00008353

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00008355

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00008354

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00008357

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00008356

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00003509

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00003510

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00008358

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00008360

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00008359

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00003511

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00008361

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00003512

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00003513

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00003514

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00003516

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003518

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003519

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003520

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00003522

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00003523

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00003524

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00003526

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00003527

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00003528

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00003529

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00003531

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00003532

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00003533

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00008364

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00003535

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00003534

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00008365

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00003536

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00003537

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00003540

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.123    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00003541

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.121    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00003542

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00003543

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00003544

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00008366

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00003545

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00003546

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00008368

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00003547

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00003548

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00008369

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00008370

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00003551

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00003550

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00003552

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00003554

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00003555

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00003553

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00008371

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00003556

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00003557

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00008372

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00003560

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.113    0.308    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00003559

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00003563

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.119    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00008376

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.119    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00003564

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.121    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00003565

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00003566

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.119    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00003567

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.119    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00003568

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.119    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00003569

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00008377

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00003570

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00003571

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00008378

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00008380

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00008381

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00008383

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00008384

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00008382

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00008385

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00008387

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00008386

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00008388

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00003573

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00003572

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00003576

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00003578

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00003577

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00003580

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00003579

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00003582

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00003581

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00003583

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00008391

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00008390

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00008389

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00003584

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00003586

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00008392

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00003587

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00003588

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00003590

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00003592

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00008393

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00003594

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.123    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00003595

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00003596

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00003599

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00003598

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00003597

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00008394

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00003600

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00003601

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00008395

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00003602

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00003603

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.126    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00008396

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.126    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00003605

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00003604

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00008397

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00003609

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.146    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00003607

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.146    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00003606

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.146    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00003608

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00003610

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00003611

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00003612

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00003613

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00003614

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00003615

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00003616

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00008398

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00008400

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00008401

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00008402

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00003618

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00003619

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00003620

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00003621

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00003622

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00003623

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00003624

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00003625

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00003627

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00003626

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00003630

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00003629

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00003631

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00003632

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00003633

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00008403

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00003635

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.140    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00003636

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.140    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00008404

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.140    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00003634

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.140    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00003637

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.140    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00003638

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.140    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00003642

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.127    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00003644

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00003643

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00003645

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00003646

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00008406

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00008407

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00008408

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.132    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00008409

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00008410

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00003647

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00003648

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.146    0.517    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00003649

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00003650

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00003651

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00003652

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00008411

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00003653

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00003654

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00008412

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00008413

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00008415

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00008414

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00003657

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00003658

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00003662

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00003659

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00003660

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00003661

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00003664

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00003665

Length=444


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00008416

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00003666

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00003694

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00003695

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00003696

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00003697

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00008430

Length=610


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 774113704


Query= TCONS_00003698

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00003699

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00003700

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00008432

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00008431

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00003703

Length=610


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 774113704


Query= TCONS_00008433

Length=610


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 774113704


Query= TCONS_00003702

Length=444


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00003704

Length=610


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 774113704


Query= TCONS_00003705

Length=610


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 774113704


Query= TCONS_00003707

Length=610


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 774113704


Query= TCONS_00008434

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.146    0.503    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00008435

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.146    0.503    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00008436

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00003667

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00008417

Length=309


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00003668

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00003670

Length=283


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00008418

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00008419

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00008420

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00003671

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00003672

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00003673

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00003674

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00008421

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00008422

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00008423

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00008424

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00003675

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.143    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00003676

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00003677

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.142    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00003678

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.143    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00003680

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.146    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00003682

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00008425

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00003683

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00008426

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008427

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00003684

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00003685

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00003686

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00003687

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00008428

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00003689

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00003690

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00003691

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00008429

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00003692

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00003710

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00003712

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00003713

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00008437

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00003714

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.125    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00003715

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.125    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00008438

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.125    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00003716

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.125    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00003718

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00003717

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00003719

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00003720

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.142    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00003722

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00008439

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00003721

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00008440

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00008441

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00008442

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00003724

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00003725

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00003723

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00008443

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00003726

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00008444

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00008445

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00008446

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00008447

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00003727

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00003728

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00008448

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00008449

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.134    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00008450

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00008451

Length=253


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00008452

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00008453

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00003729

Length=253


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00003730

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00008454

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00003731

Length=253


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00003732

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00003733

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00003735

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00003736

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00003737

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.321    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00008455

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00003738

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00003739

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00003740

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00008458

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00008457

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00008456

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00003742

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00008459

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00008460

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00003741

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00008461

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00003743

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.139    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00003744

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00008462

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00003747

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00003746

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00008463

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00003745

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00008464

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00003749

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00003750

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00003751

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00003753

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00003752

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00003754

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00003755

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.127    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00008465

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00003756

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00008466

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00003757

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00003759

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00003758

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00008467

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00003760

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00003761

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00008468

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00003765

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00003763

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00003764

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00003767

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00003769

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00003768

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00003770

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00003771

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00008471

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00003772

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00003773

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00003774

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00008472

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00008473

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.133    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00008474

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00008475

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00008476

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00003775

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00003776

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00008478

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00008479

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00008480

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00003777

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00008481

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00003778

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00003779

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00003782

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00003781

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00003780

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00003783

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00003784

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00008483

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00008484

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00003789

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00003790

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00003787

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.140    0.535    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00008485

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.143    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00003786

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.143    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00003788

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.140    0.535    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00003791

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.140    0.535    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00008486

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.140    0.535    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00008487

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.140    0.535    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00003792

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00003793

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00003795

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00003794

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00008488

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00003796

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00003797

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00008490

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00003799

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00003798

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00003800

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00003801

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00003802

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00003806

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00003803

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00008492

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00008493

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00003804

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00008494

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.127    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00008495

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.124    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00003809

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.124    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00003808

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.123    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00003810

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.123    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00003811

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.147    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00003813

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.149    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00008496

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003812

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00008498

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00008499

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00008500

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00008501

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00008502

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00003815

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00003816

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00003817

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00008503

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00008504

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00008505

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00003818

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00008506

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00003825

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00008507

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00003821

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00003822

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00003824

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00003823

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00003819

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00003826

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00003827

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00008508

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00003828

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00003829

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00003830

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00003831

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00008511

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00008512

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00003833

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00003834

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00003835

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00008513

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00003832

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00003836

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00003837

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00003838

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00008514

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00008516

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00003839

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00008517

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00003840

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00003843

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00003842

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00003841

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00003846

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00003845

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00003844

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00008519

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00003847

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00008520

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00008522

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008521

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008523

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00008524

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00003848

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00003850

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00003851

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00003853

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00003852

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.136    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00003854

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00008525

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00003855

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00003856

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00003857

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00008526

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00008528

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00008529

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00008527

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00008530

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00003859

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00003860

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008532

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00008533

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008534

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00008535

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00008536

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008537

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00008538

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008539

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00008540

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00003867

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00003861

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00008541

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00003864

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00003866

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00008542

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00003865

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00003863

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00003862

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00008543

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00003868

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00003871

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00003870

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00003869

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00003872

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008544

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00003873

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00003874

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00003875

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00003876

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00003877

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00008548

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00008547

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00008549

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00003878

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00003879

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00008550

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00008551

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00003880

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00008553

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00008554

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00003881

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00003882

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00003883

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00008556

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00008557

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003885

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003884

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00003886

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00003887

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00003889

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00003888

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00008558

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00003890

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00008559

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00003892

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00003894

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00003893

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00003895

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00003896

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00003897

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00003898

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00003899

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00008560

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00003900

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00008561

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00008562

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00003901

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00008563

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.143    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00003902

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.143    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00003903

Length=299


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00008564

Length=299


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00003904

Length=299


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00008565

Length=299


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00008566

Length=299


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00003905

Length=299


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00008567

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00003906

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00008568

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00003907

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00003908

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.151    0.546    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00003909

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.151    0.546    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00003910

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00003911

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00008570

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00003913

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00003912

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00003914

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00008571

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.119    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00003915

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00008573

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00008574

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00008575

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00003916

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00003917

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00003918

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00003919

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00003920

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00003921

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00003922

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00003923

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00003924

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00008576

Length=287


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00003925

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00008577

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00008578

Length=287


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00008579

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00003926

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00003927

Length=287


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00003950

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00003952

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00008598

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00003949

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00003953

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00008599

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00008600

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00003928

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00003929

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00003930

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008580

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00003935

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00008581

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00008583

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00008582

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00008584

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00008585

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00008586

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00008587

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00008588

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00003932

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00003931

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00008589

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00003934

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00003936

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008590

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00003937

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00008591

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00008592

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00003938

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00003940

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00008593

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00003941

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00003942

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00003943

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00008594

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00008596

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.142    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00003944

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.142    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00008597

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00003946

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00003947

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00003954

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00003955

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00008601

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00003956

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00003957

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00003958

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00003959

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00003960

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00003961

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00003962

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00008602

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00003963

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00003964

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00008603

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00003965

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00003966

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00003968

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00008606

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00003967

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00008607

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00003969

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00003970

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00003972

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00003973

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00008608

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00003974

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00003975

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00008609

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.515    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00003978

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00003979

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00008610

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.515    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00008611

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00003987

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.515    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00008612

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00003981

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00003980

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.515    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00003982

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00008613

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00008614

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00008615

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00008616

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00003984

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.564    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00003983

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.564    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00003986

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00003988

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00003991

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00003990

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00003992

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00008618

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00003993

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00008619

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00008620

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00003994

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00003996

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.145    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00003997

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.148    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00003998

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00004000

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00004001

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00008622

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00008624

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00008623

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00004003

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00004004

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00004005

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00004006

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00004007

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00008625

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00008626

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00004008

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00004009

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.123    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00004010

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.123    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00008627

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00004013

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.123    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00004012

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.123    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00008629

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00008630

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00008631

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00008632

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00004014

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00004017

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00004015

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00008633

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00004016

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00004018

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00004019

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00004021

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00004020

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00004022

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00004024

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00004025

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00008634

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00004026

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00004027

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.143    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00004031

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00004030

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00004032

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00008639

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00004036

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.129    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00004033

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00004034

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00004035

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00004037

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00004038

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00004039

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00004040

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00008640

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.123    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00004041

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.123    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00004043

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00004042

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00008643

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00008642

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00004045

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00004044

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00004046

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00008644

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00004047

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00004048

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00008646

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00008647

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00008648

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00004049

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00008649

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00004052

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00008650

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00004053

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00004054

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00004056

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00004057

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00004058

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00004059

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00004060

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00008651

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00008652

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00004061

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00004062

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00008653

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00008654

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00004065

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00004069

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00004070

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00008655

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00004071

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00008656

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00008657

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.119    0.320    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00008658

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.119    0.320    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00008659

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.119    0.320    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00008660

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00004072

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00004074

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.121    0.300    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00004073

Length=263


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 290477132


Query= TCONS_00004076

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00004075

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00004077

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00004078

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00004079

Length=263


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 290477132


Query= TCONS_00004080

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00004081

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00004082

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008661

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00004083

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00004084

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00004085

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00004086

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00008663

Length=257


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00008664

Length=257


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00004088

Length=257


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00004089

Length=257


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00004090

Length=257


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00004091

Length=257


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00008666

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00004093

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.540    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004092

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00008668

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00004094

Length=228


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00008670

Length=228


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00004095

Length=228


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00004096

Length=228


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00004097

Length=228


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00004098

Length=228


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00008672

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00004099

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00004100

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.499    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00004101

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.143    0.524    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00008673

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00004102

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00008675

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.123    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00008676

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00004105

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00004106

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00004107

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00004108

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00004110

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.144    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00004109

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.144    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00008680

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00008679

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00004111

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00008681

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.144    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00004112

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.144    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00008683

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.144    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00004113

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00008684

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.144    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00008685

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00004114

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00004115

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.144    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00008686

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.144    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00008687

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00004117

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00004116

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00008688

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00008689

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00004120

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00004118

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00004119

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00004121

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00004122

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00004123

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00004124

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00008690

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00008691

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00008692

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00008693

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00008694

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00008695

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00008696

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00004128

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00008697

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00008698

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00004126

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00004127

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00004129

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00004130

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00004131

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00004132

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00004133

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00008699

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00004135

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00008700

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008701

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00008702

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00004136

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00004137

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00004138

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00004139

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00008706

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00004140

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00008709

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00008710

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00004141

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00008713

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00008712

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00008711

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00004142

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00004144

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00004143

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00008714

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00008715

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00004146

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00004147

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00004148

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00004149

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00004152

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00004150

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00004151

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00004153

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00004154

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00004155

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00004156

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00004159

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00004158

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00008718

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00008719

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00004160

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00004161

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00004162

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00004163

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00004164

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00008721

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00008722

Length=23


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 75925852


Query= TCONS_00004165

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00004166

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00004167

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00004168

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00004169

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00004170

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00004171

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.129    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00008723

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.130    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004172

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00008725

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00008724

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00004176

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00004175

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00004174

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00004173

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00004177

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00008726

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00004179

Length=366


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00004180

Length=347


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00004181

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00004182

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00008730

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00004184

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00004183

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00004185

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00004186

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00008731

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00004187

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00004191

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00004188

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00004189

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00004190

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00008732

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00008733

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00004192

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00008735

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00008736

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00004194

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00008737

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00004195

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00004196

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00008742

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00008741

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00008743

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00008744

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00004197

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00008745

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00004207

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00008746

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00004199

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00004198

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00004200

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00004201

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00004202

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00004203

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00004204

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00004205

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00004206

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00004208

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00008748

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00008749

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00008750

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00004211

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00004213

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00008751

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00004210

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00004215

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.147    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00004216

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00004217

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00004218

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00008753

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00004220

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00004221

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00004222

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00008754

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00004223

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00004224

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00004225

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00004227

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00004228

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00004229

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00004230

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00004231

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00008756

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00004232

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00008757

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00008758

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00008759

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00004233

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00004234

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00008760

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00008761

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00008762

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00004236

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00004237

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00004238

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00008763

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00004240

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00004239

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00004241

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00008764

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.145    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00004245

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00004243

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00004244

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00008765

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00004246

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004247

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00004249

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00004250

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00008766

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00008767

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00004251

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00004252

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00004253

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00004254

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00004255

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00008769

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00008770

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00008771

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.143    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00004256

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00004257

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00004258

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00004259

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00004260

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00008772

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.114    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00004261

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00004262

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00004263

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00004265

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00004264

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00008773

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00004268

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.115    0.318    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00008779

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.115    0.318    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004269

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.115    0.318    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004270

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.115    0.318    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004271

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.115    0.318    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004272

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.115    0.318    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004273

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00004274

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00004275

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00004276

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00008780

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00008781

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00008782

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00004278

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00004279

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00008783

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00008784

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00004282

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00004280

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00004281

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00004283

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.143    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00008785

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.310    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00008786

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00008787

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00004286

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00004287

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00004288

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00008788

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00004289

Length=22


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 72624728


Query= TCONS_00004290

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00004291

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00004292

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00004293

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00008789

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00004294

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00004295

Length=250


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00004296

Length=250


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00004297

Length=250


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00004298

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00004299

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00004300

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00004301

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00008792

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00008793

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00008794

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00004303

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00004302

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00008795

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00008796

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00004304

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00004305

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00008797

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00004306

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00008798

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00008799

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00004307

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00008800

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00008801

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00004308

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00004309

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00004310

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00008803

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00008802

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00008805

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00008804

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00008806

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00008807

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00004312

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00004313

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00004314

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.142    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00004315

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00008809

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00004316

Length=266


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00008811

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00008812

Length=241


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00008813

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00008814

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00004318

Length=266


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00004319

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00004320

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00008815

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00004322

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00004323

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00008817

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00004324

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00008819

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00008818

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00008820

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00004326

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00004325

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00008821

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00008822

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00004327

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00008823

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00008824

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00004328

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00004329

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00008825

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00004331

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00004333

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004332

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004334

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00008826

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00008827

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00008828

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00004335

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00004336

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00004337

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00008829

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00008830

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00004338

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00004339

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00008831

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00008832

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00004343

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00008833

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00004341

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00008834

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00004342

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00008835

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00008836

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00004345

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00004344

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00004346

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.149    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00004347

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.149    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00004348

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.149    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00004349

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.141    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00008838

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.141    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00004350

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.141    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00008839

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.141    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00004351

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00004352

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00004353

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00008840

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00004354

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00004355

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00004356

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00004357

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00008842

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00008843

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00004358

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00008845

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008846

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00008847

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008848

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00004360

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00004362

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00004363

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00004364

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00004365

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00004366

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004367

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004368

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004369

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00008850

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00008851

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00008852

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00004371

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00004372

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00008853

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00008854

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00004373

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00008855

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00004376

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00004377

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00004370

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00004375

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00004374

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00004378

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00008856

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00008857

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00008858

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00004379

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00004380

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00004381

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00008859

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00004382

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00004383

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00004384

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00008860

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00004385

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00004386

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00004387

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00008861

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00004388

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00008862

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00004390

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00004389

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00008863

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00008864

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00004391

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00004392

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00008866

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00008867

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00008868

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00008869

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00004393

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00008871

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00004395

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00004396

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00008872

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.121    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00004397

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.121    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00004398

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00004399

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.121    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00004400

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.499    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00004401

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00004402

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00004403

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00008876

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00008877

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00004404

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00004405

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00004406

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00004407

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00004408

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00008878

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00004409

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00004410

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00004411

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00004412

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00008879

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00008880

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00008881

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00004414

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00008882

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00004415

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00004416

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00004417

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00004418

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00004419

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00004420

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00004421

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00008883

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00008884

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00008885

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00004423

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.121    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00004424

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.121    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00004425

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00008886

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00004426

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00008887

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00004428

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00004427

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00008889

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00004429

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00004430

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00004433

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00004431

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00004432

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00004434

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00004435

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.145    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00008891

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00004436

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00004437

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00008893

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00008894

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00004438

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00008895

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.130    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00008896

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00004439

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00004440

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00004441

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00008897

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.130    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00004442

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00008898

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00008899

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00004444

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00004445

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00004443

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.146    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00008900

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00008901

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00004447

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00004446

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.144    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00008903

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.144    0.502    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00008902

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00008904

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00004449

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00004448

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00004455

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00004454

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00008905

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00004451

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00008906

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00004452

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00004453

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00004457

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00008907

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00004459

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00004460

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00004461

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00008908

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00004463

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00004462

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00008909

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00008910

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00004464

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00004466

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00004465

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00004467

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00004469

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00008911

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00004501

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00004502

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00008932

Length=26


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.123    0.321    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82037150


Query= TCONS_00004503

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00004505

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00004504

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00008933

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00008912

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00004470

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00008914

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00004472

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00004473

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00004475

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00004474

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00004476

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00004477

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00008915

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00008916

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00008917

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00004480

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00004481

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00008918

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00008919

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00004484

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00004485

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00008920

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00008921

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00004486

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00008922

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00004488

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00004487

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00008923

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00008924

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00004489

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00008925

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00004490

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00004491

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00004492

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00004493

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00004494

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00004495

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00008926

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.141    0.503    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00008928

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00008927

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.141    0.503    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00004496

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.141    0.503    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00004497

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00004498

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.141    0.503    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00008929

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00008930

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00008931

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00004499

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00004507

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.145    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00008934

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00008935

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00004508

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00004510

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00004512

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00004511

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00004513

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00008937

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00004514

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00008938

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00008939

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00004515

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00008941

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00008940

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00004517

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.146    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00004518

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00004521

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00004520

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00004522

Length=434


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 527594176


Query= TCONS_00004523

Length=434


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 527594176


Query= TCONS_00008942

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00008943

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.122    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00004524

Length=434


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 527594176


Query= TCONS_00008944

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00008945

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00004526

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00004527

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00008946

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00004529

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00008947

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00004530

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00004531

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00008948

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00008949

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.144    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00004532

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.144    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00008950

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00008951

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00004533

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00008952

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00004534

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00004535

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.123    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00008953

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.123    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00008954

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00008956

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00004537

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00008957

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00004539

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00004540

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00004541

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00004542

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00008959

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00004543

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00004544

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00004545

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00008960

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00008961

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00004546

Length=336


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00008962

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00004560

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00004561

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00004562

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00004563

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00004564

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00004565

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00004547

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00008963

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.148    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00004548

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.148    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00008964

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.147    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00004550

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00004549

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00008965

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00008966

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00004551

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00004552

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00004554

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00004553

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00004555

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00004557

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00004559

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00004566

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00008967

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00008968

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00004567

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00004568

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00008969

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00004569

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00004570

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00008970

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.139    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00004571

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.138    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00004572

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.140    0.594    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00008971

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.146    0.512    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00008972

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.146    0.512    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00008973

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00004573

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00004574

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00008974

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00008975

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00004575

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00008976

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00004576

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00008977

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00004577

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00008978

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00008979

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00008980

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00004579

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00004580

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00004581

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00004582

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00004583

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.145    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00008982

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00008983

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.145    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00004584

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00004585

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.145    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00004586

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.145    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00008984

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00004589

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00004590

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00004591

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00008985

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00008986

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00008987

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00008988

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.123    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00008989

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.122    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00004593

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.123    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00008990

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.122    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00004594

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00008991

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.122    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00004595

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.150    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00008993

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.148    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00008992

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.148    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00004597

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.150    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00004598

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.148    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00008994

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.150    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00004599

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00004600

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00004601

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00008995

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00004602

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00008996

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008997

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00008999

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00004603

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00004605

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00004604

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00004606

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00004609

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00009000

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00009001

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00004608

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.147    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00004610

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00004612

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.147    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00004613

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00004614

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00004616

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00009004

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00004617

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00004615

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00004618

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00009005

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00009006

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00004619

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00004620

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00009007

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00009008

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00009009

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00004621

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00009010

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00009011

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00004622

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00004624

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00004625

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00004623

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00004626

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00004627

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00004628

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00004629

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00004630

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00004631

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00004633

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00004632

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00004635

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00004634

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00009013

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00004636

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00004637

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.115    0.313    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00009014

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00004638

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00009015

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00004639

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00004640

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00004641

Length=257


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.157    0.539    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00004642

Length=257


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.157    0.539    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00009016

Length=257


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.157    0.539    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00004643

Length=257


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.157    0.539    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00004644

Length=257


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.157    0.539    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00009017

Length=257


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.157    0.539    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00004645

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00004646

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00004650

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00004647

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00004648

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00004649

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00009019

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00009020

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00004651

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00009021

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00009022

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00004654

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00009023

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00009024

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00004652

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00009025

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00004655

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00009026

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00004656

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00009027

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00004657

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00004658

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00004659

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00009028

Length=447


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00004661

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00004662

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00004663

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00009029

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00009031

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00004665

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00004666

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00004667

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00009032

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00009033

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00004669

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00004670

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00009034

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00004671

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00004672

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00004673

Length=25


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82528100


Query= TCONS_00009035

Length=25


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82528100


Query= TCONS_00004677

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.562    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00009036

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00004674

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00004676

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.123    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00004678

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.562    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00004675

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.123    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00004679

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00009037

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00009038

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00004681

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00004682

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00009039

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00009040

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00004684

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.128    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00004686

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00009041

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00004687

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00009042

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00004688

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00004689

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00009043

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00009044

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00004691

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00004692

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00004693

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00004694

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00009045

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00004696

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00004697

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00004698

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00004699

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00004700

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00004701

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00009046

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00004702

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00004703

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00004704

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00004705

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00004706

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00009047

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00004707

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00009048

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00009049

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00004708

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009050

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009052

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009051

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00009053

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00004709

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00009054

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00004710

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00004711

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00004723

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00004717

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00004716

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00004713

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00004712

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00004715

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00004714

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00009056

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00004718

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00004719

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00004720

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00004722

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00004721

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00009057

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00009058

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00009060

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00009059

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00009061

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00004724

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00009062

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00009063

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.146    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00009065

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009064

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00009066

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00004726

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.123    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00004727

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.123    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00009068

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00009067

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.119    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00009070

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.123    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00009069

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.123    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00004732

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00009071

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00004731

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.119    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00004730

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00004733

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00009072

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00004736

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00004738

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00004739

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00004740

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00004741

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00009073

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00004742

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00004743

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00009074

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00009075

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00004745

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00004747

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00004746

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00004748

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00009076

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00004749

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00009077

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004750

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00004751

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00009078

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00004752

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00009079

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00009080

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00009082

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.151    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00004755

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.151    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00004754

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.151    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00009083

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.151    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00004759

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.151    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00009084

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.151    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00004761

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.151    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00004753

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.151    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00004760

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.151    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00009085

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.151    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00004757

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.151    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00004758

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00009086

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.151    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00009088

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.151    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00009087

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.151    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00004762

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.151    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00004770

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00009089

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00004771

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00009090

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00009092

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00009091

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00004764

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00009093

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00004769

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00009094

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00004766

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00004767

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00004768

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00009095

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00009096

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00009097

Length=197


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00004772

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00009098

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00004774

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00004775

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00004776

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00009100

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00009099

Length=197


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00004777

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00004778

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00009101

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00009102

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00009103

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00004779

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00004780

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00009104

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00009105

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00004781

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00004782

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00004784

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00004783

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00009108

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00004785

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00004786

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00009109

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00004787

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00004790

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00004788

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00004789

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00004791

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00009111

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00004792

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00004793

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00004794

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00004795

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00004796

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00004797

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00009113

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00004798

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00004799

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00004800

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00009114

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00004801

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00004802

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00009115

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00009116

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00004803

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00009117

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00004804

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00009118

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00004805

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00009119

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00009120

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00004806

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00004807

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00004808

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00004809

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00009122

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00004810

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00009123

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00004811

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004812

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004814

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00004813

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00009124

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004815

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00009125

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00004816

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00009126

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00004818

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004817

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004820

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00004819

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00009127

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00004821

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00004822

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00004823

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00004824

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00009128

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00004825

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00004827

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00004826

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00004828

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00004829

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00009129

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.148    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009131

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00004831

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00009132

Length=347


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00004833

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00004832

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00004834

Length=347


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00004835

Length=347


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00004837

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00004836

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00004838

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00009134

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00004839

Length=306


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00009135

Length=297


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00009136

Length=297


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00009137

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00004840

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00004841

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00004845

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00004842

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00004843

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00004844

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00009139

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00009138

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00004847

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.122    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00009141

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.122    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00009140

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.122    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00004849

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.124    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00009142

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00009144

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00009143

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00004850

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00004851

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009145

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009146

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009147

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.119    0.320    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00009148

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00004852

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009149

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00004853

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00004854

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00004855

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00009150

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00009151

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00009152

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00004856

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00009153

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00004857

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00009154

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00004859

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00009157

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00004861

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00009158

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.124    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00009159

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.504    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00004862

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.493    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00004864

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00004865

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00009160

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00004867

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.144    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00004868

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00004866

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00004869

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00004871

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00009161

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00004870

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00004872

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00004873

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00009162

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.151    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00004874

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00004876

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004875

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00004877

Length=229


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00004878

Length=229


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00004879

Length=229


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00004880

Length=229


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00009163

Length=229


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00009164

Length=229


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00004881

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00004884

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00004882

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00004883

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00004885

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00009166

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00004887

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00004886

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00004888

Length=220


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00004889

Length=220


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00004890

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00004891

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00004892

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00009169

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00004893

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00004894

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.342    0.154    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00004895

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00004896

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.342    0.154    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00009170

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.342    0.154    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00004897

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00004900

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00004899

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00004898

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00004901

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00004902

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00009171

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00009172

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00009173

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00004903

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00004904

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00004905

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00009175

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00009176

Length=21


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 69323604


Query= TCONS_00004907

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00004908

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00009178

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00009179

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00009180

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00004909

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00004910

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00004911

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00009181

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.133    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00004914

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00004913

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00004917

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00004916

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00004915

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00004919

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00004920

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00004921

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00009183

Length=273


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00004924

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00004925

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00009185

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00004927

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.146    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00009186

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00004930

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00009187

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00004931

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00004929

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.121    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00009188

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00009189

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00009190

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00009191

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00004932

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00004933

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00004934

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00009192

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00009193

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00004936

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00004935

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00009194

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00004938

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00004939

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00004941

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00004942

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00004943

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00004944

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00004945

Length=22


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.157    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 72624728


Query= TCONS_00009196

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.119    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00009195

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.119    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00004947

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00004946

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00004948

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00009198

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00009197

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00004949

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00004951

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00004950

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00009199

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00004952

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00009200

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009201

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00009202

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00009203

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00009204

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00004953

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00009205

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00004956

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00009206

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00004957

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00004958

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00004959

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00004960

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00004961

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.139    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00004962

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00009207

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00009208

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00004964

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00004965

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00004966

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00009209

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00009210

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00004967

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00004968

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00004969

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00004971

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00004970

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00004972

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00004973

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00004974

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00004975

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00009212

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00009213

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00009214

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00004978

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00004977

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00004979

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00009215

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00004980

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00004981

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00009216

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00004982

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00009217

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00004983

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.133    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00004984

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.144    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00004985

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.144    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00004986

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.144    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00004987

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00004988

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00004989

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00004990

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00009218

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00009219

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00004992

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.145    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00004994

Length=25


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.152    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82528100


Query= TCONS_00004993

Length=25


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.152    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82528100


Query= TCONS_00004995

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00004996

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00004997

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00004998

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00004999

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005000

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00009221

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00005001

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.557    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00005002

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00009222

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00009223

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00005003

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00005004

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00009224

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00009225

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00009226

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00005006

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00009227

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005007

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005008

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005009

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00005010

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00005013

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00005011

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00005016

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.138    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00009229

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.138    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00005017

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00005018

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00005019

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00005020

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00005021

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00005023

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00005022

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00009230

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00005025

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00009231

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00009232

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00005026

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00005027

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00005028

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00009233

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005029

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005030

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005031

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00005032

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009234

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005034

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009236

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009235

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005035

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009237

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005036

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005038

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009238

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00005040

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005039

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005044

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005042

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00005043

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005045

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00009240

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00009239

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00009241

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00009242

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00005048

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.144    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00005050

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00009243

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00005049

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00009245

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00005055

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00005051

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00009246

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00005053

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00005052

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00005054

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00005056

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00009247

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00005057

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00009248

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00009249

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00005058

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00009250

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00005059

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.150    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00005060

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00005061

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00009251

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00005064

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00005062

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00005063

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00005065

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00005066

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005068

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005067

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00009252

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005071

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005069

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.142    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00009253

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.142    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00009254

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.142    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005070

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00009255

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.142    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00009257

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00005072

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00009258

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00009259

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00009260

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00005073

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00009261

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00005074

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00005075

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00005076

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00009262

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00009264

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00005077

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.146    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00009265

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00005079

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00005078

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00005080

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00005082

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00005083

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00009266

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.124    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00009267

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00009268

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.144    0.497    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00009269

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005084

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00009270

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005085

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005086

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00009271

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005087

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005088

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005089

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005090

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00005091

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00005095

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00009273

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00009274

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00005096

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00005097

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00009275

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00009276

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00005100

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00005101

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00009277

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00009279

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00005102

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00005099

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00009280

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00009281

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00005103

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.130    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00005104

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005105

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00009282

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00005108

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00005107

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00009284

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00009285

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00009283

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00005106

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00009286

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00009287

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00009288

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00005109

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00005110

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00009289

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00005111

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00009290

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00005112

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00009291

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00009292

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00005114

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00009293

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00005115

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00009294

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00005116

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00005117

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00005118

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.144    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00005119

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00005120

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.144    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00005121

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00005122

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00009297

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00009296

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00005123

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00009298

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00005124

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00005126

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00005128

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00005127

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00009299

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00005129

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00005130

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00005131

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00009300

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00009301

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00005132

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00005133

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00005134

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00005137

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00005136

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00005135

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00005138

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00005139

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00009303

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00009302

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00005140

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00005141

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00009304

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00005143

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00005142

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00005144

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00005146

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00005145

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00005147

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00005148

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00009305

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00005149

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00005150

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00005151

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00005152

Length=260


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00009306

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005153

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00009307

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00009308

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00005154

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00005155

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00005156

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00005158

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00005157

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00005159

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00005160

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.129    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00005161

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00005162

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00005163

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00005164

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00009310

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00009311

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00009312

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00009313

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00005165

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00005166

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00009314

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00005168

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00005167

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00005170

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00005169

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00005171

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00005172

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00005173

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00005174

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00009315

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00009316

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00009317

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00009318

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00005175

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00005176

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00005178

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00005177

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00005179

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00009319

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00005180

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00009321

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00005181

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00005182

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00009322

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00009323

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00005183

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00009324

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00005184

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00005185

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00005186

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00005187

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.149    0.492    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00005188

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00005190

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00005189

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00005192

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00005191

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00005193

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00009326

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00005194

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00009327

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00009328

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00009329

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00005196

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00005197

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00005199

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00005198

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00009330

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00009331

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00009332

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.125    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00005200

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00009333

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00005201

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00005202

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00009334

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00005203

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00005204

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00005205

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00005209

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00009336

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00009337

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005213

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005207

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005208

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005210

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005211

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005212

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00009338

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00009339

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005214

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005215

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00009340

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00005216

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00005217

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005218

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005220

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00005219

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005221

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00009341

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00005223

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00005225

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005224

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005226

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00009342

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.493    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00005228

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00005227

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00009344

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00009345

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00005232

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00005229

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005230

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005231

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00005233

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00005234

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00005235

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00005236

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00005238

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00005237

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00009347

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00009348

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00009349

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00005239

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00005240

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00005241

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00009350

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00009351

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00005243

Length=247


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00005244

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00005245

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00005246

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00005248

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00005247

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00005249

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00005250

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00009353

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00009355

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00005251

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00005252

Length=20


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.121    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 66022480


Query= TCONS_00005253

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00009357

Length=222


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00009358

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00005254

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00009359

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00005256

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005255

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005257

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00005258

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009360

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009361

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009362

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005259

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005260

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005261

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009364

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009363

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009365

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009366

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009367

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009369

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009368

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005262

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005263

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005264

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00005266

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00005265

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00005267

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00005268

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00005269

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00005271

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00005270

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00005273

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00009371

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00005272

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00005276

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00005275

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00005277

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00005278

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.143    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00005279

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00005281

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00005282

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00009373

Length=24


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.114    0.317    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 79226976


Query= TCONS_00005283

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00005284

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00009375

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00005285

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00005286

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00005287

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00005288

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00009376

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00005289

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.115    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00005290

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00009377

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.115    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00009379

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.115    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00009380

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.115    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00005291

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.115    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00005292

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.115    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00009381

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.115    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00009382

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.115    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00005293

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.115    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00009383

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.115    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00005294

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00005295

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00009384

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00005296

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00009385

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00005298

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00009386

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00009387

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00009388

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00009389

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00005299

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00005301

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00005300

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00005302

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00005305

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00005306

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.147    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00005307

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.147    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00009390

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.146    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00005308

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.146    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00005309

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.146    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00005310

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.146    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00005312

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00009391

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00005313

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00005314

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00005315

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005316

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005317

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00009393

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00005320

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00005321

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00009394

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00005322

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00005323

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00005325

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00005324

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00005326

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00005327

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.146    0.553    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00009395

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00009396

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00009398

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00005331

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005330

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00009400

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00009399

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00009401

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00005333

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00005334

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00005336

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00005337

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00009403

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00009404

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00005339

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00009406

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00005340

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00009407

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00005344

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00005343

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00009408

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00005345

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00005346

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00005347

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00009409

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00009411

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00009410

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00009412

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00009413

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00005350

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00005351

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00005352

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005353

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00009415

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00009414

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00005354

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00005355

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005357

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005356

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00009416

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00009418

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00009417

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005358

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005360

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00009419

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00009420

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005359

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00009421

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005362

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005363

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00005364

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00005365

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00009422

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00009423

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00009424

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00005366

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00005367

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00005368

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00009425

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00009426

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00009427

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00005371

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00005372

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00005373

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.345    0.149    0.521    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00005374

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00005375

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00009429

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00005376

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00009430

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00005377

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00005378

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00005379

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00005380

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00005381

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00005382

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00005385

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00005384

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00005383

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00005386

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00005387

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00009434

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00009435

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00005388

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00005392

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00005389

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00009437

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00009438

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00005390

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00005391

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00009439

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00005393

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00005394

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00005395

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00005396

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00005397

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00009441

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00005398

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00009442

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00005399

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00005402

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005403

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.148    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00005404

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.148    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00005406

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.148    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00005405

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005407

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.148    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00005408

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00009443

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005409

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005410

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00005411

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.148    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00005412

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.148    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00009444

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00009446

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00009447

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00005413

Length=283


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00005414

Length=283


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00005415

Length=283


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00005416

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00005418

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005417

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005420

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005419

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00009450

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00009449

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005421

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00009451

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.126    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00005422

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00005423

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00005424

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005425

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.126    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00005426

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005427

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00005428

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00009452

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00005429

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005430

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00009453

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00009454

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00009456

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00009455

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00009457

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00009458

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00005432

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00009459

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.144    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00005433

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00009461

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00009462

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00005435

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00005436

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00009464

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00005438

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00009467

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00009468

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.343    0.154    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005439

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.345    0.156    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005440

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005441

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00009469

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00009470

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.146    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00009471

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005445

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00005442

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00005443

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00005446

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00005448

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00005447

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00009472

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00005444

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00009473

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00009475

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00009474

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00005449

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00005450

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00005451

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00009476

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00009477

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00009478

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00005455

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00009479

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00005452

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00005453

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00005454

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00009480

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00009481

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00009482

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00005456

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00005457

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00005458

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00005460

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00009483

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00005463

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00009484

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005464

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00009485

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00009486

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00005465

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00009487

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005466

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00005467

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00009488

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005468

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00005469

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00009489

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00009490

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.124    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00005470

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00005471

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00005472

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.123    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00005475

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005474

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005478

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005477

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005476

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005480

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005479

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005481

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00009491

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00009495

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00005483

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00005484

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00005485

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00005488

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00005487

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00005489

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00005490

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00005491

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00005492

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00009496

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00005495

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00009497

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00005493

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00009498

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00009499

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00005496

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00005497

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00005494

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00005499

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00009500

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00005502

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00005501

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00005503

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00009501

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00005505

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00005504

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00009502

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00009503

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009504

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00009505

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00009506

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009507

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00009508

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00005508

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00005509

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00005510

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00005511

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00005513

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.148    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00005514

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00005515

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.127    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00005516

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.125    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00009510

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00009511

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00009513

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00009512

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00009514

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00005517

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00009515

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00005518

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.148    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00005519

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.148    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00005520

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00005521

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00009518

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.148    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00009520

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.148    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00005522

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00005523

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00005525

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00009521

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00005524

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00005526

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00009522

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00005528

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00009524

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00009523

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00005527

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00005529

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00005530

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00005532

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00005534

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00005536

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005538

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005537

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00009525

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005539

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00009526

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005540

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00009527

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00005541

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005543

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005542

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005545

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005547

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00005548

Length=339


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00005549

Length=333


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00009529

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00009530

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00009532

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00009531

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00005550

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00005551

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00005553

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00005552

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00005554

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00005556

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00009534

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00005555

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00005557

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00009535

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00005560

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00005559

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00005561

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00005562

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00005563

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00009537

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00009538

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00005564

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00005565

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00009539

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00005566

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00005567

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00005568

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00009540

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00009541

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00005571

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00009542

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00005569

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00005570

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00009543

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00009545

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00009544

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00005572

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00005573

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00005574

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00005575

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.133    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00005576

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00005577

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00009546

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00005578

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00005579

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00005580

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00005581

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00009547

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00009549

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005585

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005588

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005587

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005586

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005589

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005590

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00009551

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00005591

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005593

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00005592

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005594

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005595

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00009552

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00009553

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00009554

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00005596

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00005598

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00005599

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00005600

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00005601

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00009556

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00009555

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00005603

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00005605

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005606

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00009557

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005610

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005607

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005609

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005608

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005612

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00005611

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005613

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00005614

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00009558

Length=263


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 290477132


Query= TCONS_00005615

Length=263


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 290477132


Query= TCONS_00005616

Length=263


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 290477132


Query= TCONS_00009559

Length=263


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 290477132


Query= TCONS_00005617

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.128    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00005618

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00009561

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00005619

Length=212


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00005620

Length=212


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00005621

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00009562

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00005622

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00005624

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00005623

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00009563

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00005625

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005626

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00005627

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00005628

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00009564

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00009566

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00009565

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00009567

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00005629

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00005632

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00005631

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00009568

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00009569

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00009570

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00009571

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00009573

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00009572

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00005633

Length=319


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00009574

Length=319


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00009575

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00005634

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00005635

Length=319


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00005636

Length=319


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00009577

Length=319


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00005637

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00005638

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00009578

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00005639

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00005641

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00005640

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00009579

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00005642

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00005643

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00009580

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00009581

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00005644

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00009582

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00009583

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00005645

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00005647

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00009584

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00005646

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00005649

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00005650

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005651

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005652

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00005653

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00005654

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.147    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00005655

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.146    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00005656

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00005657

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00009586

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00009587

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00005658

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00009588

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00005659

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00009589

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00009590

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00005661

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00009591

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00005662

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00005663

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00009592

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00009593

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00009594

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00005664

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00005666

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00005669

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00005667

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00009595

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00005670

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00005672

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.147    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00005675

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.147    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00005673

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00005676

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00005677

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00009596

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00005678

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00005680

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00005681

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00009597

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00005685

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00009600

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00009599

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00005687

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00009601

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005688

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00005689

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00005690

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00005691

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00005692

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009602

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00009604

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009603

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009605

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005694

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005693

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00005695

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00009607

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00005697

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00009609

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00005698

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00005699

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00009610

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00005700

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005701

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.497    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00005702

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00005703

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.146    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00005711

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00009611

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00005704

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00005705

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00005706

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00005707

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00005708

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00005709

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00005710

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.120    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00009612

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00009613

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00009614

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00009616

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00009615

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00009617

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00005712

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005713

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00005714

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009618

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009619

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00005715

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00005716

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00009620

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00005719

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00005718

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00005717

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00009621

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00005722

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00005721

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00005720

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00005723

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00009622

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00009623

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00009624

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00009625

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00005724

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00005725

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00005726

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00005730

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00005727

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00005728

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00009626

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00005729

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00009627

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.137    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00005732

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00005731

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00005733

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00009628

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00005734

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00005735

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009629

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00005736

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00005737

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00005738

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00005739

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00005742

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00005740

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.149    0.497    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00005741

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00005743

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00009630

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00005745

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00005744

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00005747

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00005746

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00005748

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00005749

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00005750

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00009632

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00009633

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00005751

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00009634

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00005752

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.126    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00005753

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00005754

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.124    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00005755

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.124    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00005756

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00009635

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.118    0.282    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00005759

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.118    0.282    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00005762

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.118    0.282    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00005764

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00005765

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00009636

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00009637

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00005766

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00005767

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00005768

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00005769

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00009639

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.132    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00005771

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.149    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00005772

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00005773

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00009640

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00005775

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00009641

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00009642

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00005776

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00005777

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00005779

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00005778

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00009643

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00005780

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.128    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00009644

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00005782

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00005783

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.121    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00005784

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00009645

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00009646

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00005788

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00005785

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.139    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00005787

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00009647

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00009648

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00005789

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005790

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00009649

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005798

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005791

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005792

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005796

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005793

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005794

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00009650

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00005795

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005797

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005799

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00005800

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00005801

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00005802

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00005803

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00005804

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00009651

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00005805

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00005806

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00005807

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00009654

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00005808

Length=221


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00005809

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.132    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00005810

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00009655

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.132    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00009656

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00009657

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00009658

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00005813

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00005814

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00005815

Length=221


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00005816

Length=221


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00009659

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00009660

Length=221


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00005818

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00005820

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00009661

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00009662

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00009663

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00005822

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00005821

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00005823

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00005825

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00005824

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00005826

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00005827

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00009664

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00009666

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.117    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009665

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00005828

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.117    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00005829

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00005830

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00005831

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00009667

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00005839

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005833

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005832

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005837

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005835

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005834

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00005836

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00009668

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00005838

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00005840

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00005841

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00005842

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00009669

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00009670

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00005843

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.128    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00009671

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00009672

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.152    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00005844

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.152    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00005845

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00009673

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.152    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00005847

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00009674

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.152    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00005846

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00009675

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.152    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00009676

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00005848

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00005849

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00005851

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.152    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00005852

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00009677

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.152    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00009679

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.152    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00005853

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00005854

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00009680

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00005857

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00005856

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00005855

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00005858

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00005859

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00005860

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00005861

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00005862

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00009681

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00005910

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.145    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00005911

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00005912

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00009702

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00009703

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00005909

Length=352


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00005913

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00005914

Length=352


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00009682

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00005864

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00005863

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00005865

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00005866

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00005867

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00005868

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00005869

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00005870

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00005871

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00005872

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00005874

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00005873

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.133    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00009683

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00005876

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.123    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00005877

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00005878

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00005879

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00005880

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00009684

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00005881

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00005882

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00009685

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00005883

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00005884

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00005885

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00009686

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00005886

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00005887

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00005888

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00009687

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.125    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00005889

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.145    0.497    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00005892

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00005891

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00005890

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00009688

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00009689

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00005893

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00005894

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00005895

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00009690

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00009691

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00009692

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00005896

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00009694

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00009693

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00005898

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00005899

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00005921

Length=212


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00005922

Length=221


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00009709

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00009695

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00005903

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005902

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005901

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00009696

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005907

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005900

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00009697

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005904

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005906

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005905

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00009698

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00009699

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00009700

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00005908

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00009701

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00009704

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00009705

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00009706

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00005917

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00005919

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.141    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00009707

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.146    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00009708

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.143    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00005920

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00009710

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00009711

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00005924

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00005925

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00005926

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00009712

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00009713

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00005927

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00005928

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00009714

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00009715

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005930

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009716

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00005931

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00005933

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00005932

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00009717

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00009718

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00005934

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00005935

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00005936

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00005937

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00009719

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00009720

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00009721

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005938

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00005939

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00005940

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00009722

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00005941

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00005943

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00005944

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00009728

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00009729

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00005948

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005949

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.120    0.328    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00005950

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.120    0.328    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00009730

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.342    0.158    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00009731

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.342    0.158    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00005951

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.342    0.158    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00005952

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.342    0.158    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00005953

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00009732

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00005954

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00009733

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00009734

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.151    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00009736

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00005955

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00005957

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00005958

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00009738

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00009739

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00005959

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00005960

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00005962

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00005961

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00005963

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00005964

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00005965

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00009740

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.146    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00005969

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00005966

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00005967

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00005968

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00005970

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00005971

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00005972

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00005973

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00009741

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00005974

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00009742

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00005978

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.115    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00005976

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.115    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00005977

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.115    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00005979

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.115    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00005980

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00005981

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.298    0.114    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00005982

Length=22


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 72624728


Query= TCONS_00005983

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.129    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00005984

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00005985

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00005986

Length=20


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 66022480


Query= TCONS_00005987

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00005988

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00005990

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00005991

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00005992

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005993

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00005994

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00009743

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.328    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00005995

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009744

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00005996

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009746

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00009748

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00005998

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00009749

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00009750

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00005999

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00006000

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00006001

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00006002

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00009751

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00006003

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00009752

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00009753

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00006006

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00009754

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00006005

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00009755

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00006008

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00009756

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00009757

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00009758

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00006009

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00006010

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00006011

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00009760

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00009761

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00009762

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00006013

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00006012

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00009764

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00009763

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00006014

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00009765

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00006015

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00006016

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00009766

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00006017

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00006018

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00006019

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00009768

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00006021

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00009769

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00006020

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00009770

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00006022

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00009771

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00006023

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00006025

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00006027

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.122    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00006029

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.145    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00006030

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.145    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00006031

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00006032

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00006033

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00009772

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00009773

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00009774

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00006034

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00009775

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00009776

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00009777

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00009778

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00009779

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00006035

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00006036

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00006038

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00009780

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00006040

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00006039

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00009781

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00009782

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00009783

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00006041

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00006042

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.132    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00009784

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00009785

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00009786

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.132    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00009787

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00006043

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00006044

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00006046

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00006047

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00009788

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.125    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00006048

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00009790

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00006052

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00006053

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00006054

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00006055

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00006056

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00006057

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009791

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00006058

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00009792

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00009793

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00006059

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00006061

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.531    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00006062

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.531    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00006063

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.531    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00009794

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00009795

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00009796

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00006066

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00009797

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00006067

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00006069

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00009798

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00009799

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00009800

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00006071

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00009802

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00006073

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00009803

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00009804

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00006083

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00006076

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00006078

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00006077

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00006080

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00006079

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00006082

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00006081

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00009806

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00009805

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00009807

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00006085

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00006084

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00006086

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00009809

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00009808

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00006075

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00006087

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00009810

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00006088

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.146    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00006089

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00009811

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00009812

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00006090

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.138    0.493    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00006091

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00006092

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00006093

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00006094

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00006096

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00009813

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009816

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00006098

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.119    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00006100

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00006101

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00009817

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00006105

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00006104

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00006106

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00009818

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00006107

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00009820

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00009821

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00006108

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00006109

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00006110

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00009823

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00006113

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00006115

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00006114

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00009824

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00009825

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00009827

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00009828

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00006117

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00009829

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00006119

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00006120

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00006121

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00006122

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00009831

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00009830

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00006123

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00009832

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00006124

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00006125

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00006126

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00009833

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.134    0.538    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00006127

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00009835

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00006128

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00006129

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00006130

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00006131

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00009837

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00009839

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00006132

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00006133

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00009840

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00006136

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00006137

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00006138

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00006139

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00006140

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00006142

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.128    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00009842

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.300    0.122    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00009841

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.300    0.122    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00006143

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.300    0.122    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00006144

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00006145

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00006146

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.138    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00006147

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00006149

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00009844

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00009845

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00006151

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00006150

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00006152

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00006153

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00006154

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00009846

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00006155

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00006157

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00009847

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00006158

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00006159

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00006160

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00006161

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00006162

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00006163

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00009849

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00006165

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00006167

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00006166

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00009850

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00009852

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00009851

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00009853

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.518    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00009854

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.518    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00009855

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.518    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00006170

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.148    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00009856

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00006171

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00006173

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00009857

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00006174

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00009858

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00006176

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00006175

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00006177

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00009860

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00006179

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00006180

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00009864

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00009865

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00006181

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00009866

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00006182

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00006184

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00006183

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00006185

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00009867

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00006186

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00006187

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00006188

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00006189

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00006190

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00009868

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00006191

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00006192

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00006193

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00006194

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00006195

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00006196

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00009869

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00006197

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00006198

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00006199

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00006200

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00006202

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00006201

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00009870

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00009871

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00009872

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00006203

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00006204

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00006205

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00006206

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00006209

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00006208

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00006207

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00009873

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00006210

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00009874

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00006211

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00006216

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00006212

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00006213

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00006214

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00006215

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00006217

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00009875

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00006218

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00006219

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00009877

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00009878

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00006221

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00009879

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00009880

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00006223

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00006222

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00006224

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00006226

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00006227

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00006228

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00006225

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00009881

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00006230

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00006232

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00006231

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00006234

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00006233

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00006235

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00009884

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00009885

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00006236

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00006229

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00009886

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00006237

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00009887

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00009888

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00009889

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00006238

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00009890

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00009891

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00009892

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00009893

Length=291


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00006241

Length=291


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00009894

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00006239

Length=291


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00006240

Length=308


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00009895

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00006243

Length=291


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00009896

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00006242

Length=291


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00009897

Length=291


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00009898

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00009901

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00009902

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00006244

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00006245

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00009904

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00006247

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00006246

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00006248

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00006249

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00009905

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009906

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00006251

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00009907

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00006252

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00006250

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00006253

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00009908

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00006254

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00009909

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00006255

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00006256

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00006258

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00006257

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00009911

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00009912

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00006259

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00006260

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00006261

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00006262

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00009915

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00009914

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00009916

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00006263

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00006265

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00006266

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00006267

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00006268

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00006269

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00009918

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00006271

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00006273

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00006272

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00006274

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00009920

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00006275

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00006276

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00009921

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00009922

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00006277

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00006278

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.148    0.510    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00006279

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00006280

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00009923

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00006285

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00006281

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00009924

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00006286

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00006282

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00006283

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00006284

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00009925

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00006287

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00006288

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00006291

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00006292

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00006293

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00009926

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00006294

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00006296

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00006297

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00009927

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00009928

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00009929

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00006299

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00009930

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00006300

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00006301

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00009931

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00009932

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.123    0.316    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00009933

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00006302

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00009934

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00006303

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00006304

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00006305

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00006306

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00006307

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00006308

Length=20


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.147    0.518    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 66022480


Query= TCONS_00006309

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.146    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00006310

Length=100
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               77.1    1e-20
CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies)            52.7    1e-11


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 77.1 bits (190),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 57/84 (68%), Gaps = 4/84 (5%)

Query  1   MVQLLLDHGWNVNDEDAEELTPLLLAAKEGYSSVVQVLLNHPQINLHAQDHCGSTALHAA  60
           +V+LLL++G + N +D    T L LAAK G+  +V++LL H  +NL      G TALH A
Sbjct  12  LVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNL---KDNGRTALHYA  68

Query  61  AKEGHLEVVKLLLTEGSIDVNVKD  84
           A+ GHLE+VKLLL +G  D+NVKD
Sbjct  69  ARSGHLEIVKLLLEKG-ADINVKD  91


 Score = 64.8 bits (158),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 4/75 (5%)

Query  23  LLLAAKEGYSSVVQVLLNHPQINLHAQDHCGSTALHAAAKEGHLEVVKLLLTEGSIDVNV  82
           L LAAK G   +V++LL +   + + QD  G TALH AAK GHLE+VKLLL     DVN+
Sbjct  1   LHLAAKNGNLELVKLLLENG-ADANLQDKNGRTALHLAAKNGHLEIVKLLLEH--ADVNL  57

Query  83  KDKDGVTPLWWATQK  97
           KD +G T L +A + 
Sbjct  58  KD-NGRTALHYAARS  71


>CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies).  
Length=54

 Score = 52.7 bits (127),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (2%)

Query  19  ELTPLLLAAKEGYSSVVQVLLNHPQINLHAQDHCGSTALHAAAKEGHLEVVKLLL  73
           ELT L  AA  G+  ++++LL     +++A D  G TALH AA  G++EV+KLLL
Sbjct  1   ELTALHAAAASGHLELLRLLLEKG-ADINAVDGNGETALHFAASNGNVEVLKLLL  54



Lambda      K        H        a         alpha
   0.314    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00009938

Length=21


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 69323604


Query= TCONS_00009939

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.141    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00009940

Length=22


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 72624728


Query= TCONS_00009941

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00006314

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00006315

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.132    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00006316

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00006317

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00009943

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00009944

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00009945

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00009946

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00009948

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00006318

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.142    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00006319

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00009950

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00006320

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00009951

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.138    0.514    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00006322

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00009952

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00009954

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00006323

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00006325

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0731    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00006326

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00006327

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00009956

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00009957

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.313    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00006330

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.148    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00009958

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00006332

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00009959

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00006334

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00006335

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00006336

Length=25


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82528100


Query= TCONS_00006337

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00006338

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00006340

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00009962

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00009963

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00009964

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00009965

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.119    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00009966

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00009967

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00006341

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00006342

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00009968

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.129    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00006344

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00009969

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00006345

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00006346

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00009970

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.120    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00009971

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00009972

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00006349

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00006350

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00009974

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.499    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00009975

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00006351

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.132    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00006352

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00009977

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00006353

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00009980

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00006354

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00006355

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.123    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00009982

Length=26


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.146    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82037150


Query= TCONS_00009983

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.148    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00009984

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00006356

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00006357

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00006359

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00006360

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00006361

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00006362

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00006363

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00006364

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00009986

Length=351


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00009987

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  74.9    4e-17


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 74.9 bits (185),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 32/92 (35%), Positives = 54/92 (59%), Gaps = 4/92 (4%)

Query  277  NVIIFCRTKRLVDA--LSDQMDPEAAKFHSDLSDQAKLDQLDRFQSSRY-ILVATGAIGA  333
             V+IF +TK+ ++A  L ++   + A+ H DLS + + + L+ F+  +  +LVAT     
Sbjct  17   KVLIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILEDFRKGKIDVLVATDVAER  76

Query  334  GFDFHDIDLVIHFLPGEYEMTSFMQESGRAGR  365
            G D  D+DLVI++    +   S++Q  GRAGR
Sbjct  77   GLDLPDVDLVINYDL-PWNPASYIQRIGRAGR  107



Lambda      K        H        a         alpha
   0.323    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00009988

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00016924

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00009989

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00009990

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00009991

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433424 pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomuta...  139     5e-40


>CDD:433424 pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase.  This 
domain includes the enzyme Phosphoenolpyruvate phosphomutase 
(EC:5.4.2.9). This protein has been characterized as catalyzing 
the formation of a carbon-phosphorus bond by converting 
phosphoenolpyruvate (PEP) to phosphonopyruvate (P-Pyr). 
This enzyme has a TIM barrel fold.
Length=241

 Score = 139 bits (352),  Expect = 5e-40, Method: Composition-based stats.
 Identities = 80/234 (34%), Positives = 114/234 (49%), Gaps = 15/234 (6%)

Query  66   YDGLSSRLVEEAGFPIIFLAGYAVASGFGLPDTGYIAMEDMCRKIQEVVRVTSIPVMADG  125
            +D  S+R+VE AGFP I  +   VA+  G PD   +  +++    + +     +PV AD 
Sbjct  17   WDAASARIVEAAGFPAIATSSAGVAASLGYPDGELLPRDELLAAARRIAAAVDLPVSADL  76

Query  126  DTGYG-SPMNVKRTVECFAAAGAAGIMIEDQTWPKRCGHTKGKSVVSRGEAYARVQAACD  184
            +TGYG SP  V  TV    AAG  G+ IED    +  G       +   EA AR++AA  
Sbjct  77   ETGYGDSPEEVAETVRRLIAAGVVGVNIEDSKTGRPGGQL-----LDVEEAAARIRAARA  131

Query  185  A-RNEGQDIFILARTDALIHG----WDEAITRAKEFKRIGVDAVFVEALPDREAMKRCSE  239
            A R  G    I ARTDA + G     +EAI RA+ +   G D +FV  L D   +     
Sbjct  132  AARAAGVPFVINARTDAFLLGRGDALEEAIRRARAYAEAGADGIFVPGLLDPADIAALVA  191

Query  240  EIGIPVFANIIEGGKTENLSALELAQLGFCAVAYPWTLVAAKLKSIRETLDDLK  293
             +  PV  N++ G  T  LS  ELA LG   ++Y   L  A L ++R   +++ 
Sbjct  192  AVPGPV--NVLAGPGT--LSVAELAALGVARISYGNHLARAALAALRRAAEEIL  241



Lambda      K        H        a         alpha
   0.318    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00009992

Length=463


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00009993

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433324 pfam13578, Methyltransf_24, Methyltransferase domain. ...  64.3    8e-14


>CDD:433324 pfam13578, Methyltransf_24, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=106

 Score = 64.3 bits (157),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 59/119 (50%), Gaps = 16/119 (13%)

Query  89   LEIGGYIGYSAIMFGSAMRNTGVLAPRYVSLEMNPKFASVSRTLVEVAGLSDVVEIQEGP  148
            +EIG Y G S +   +A+R+ G    R  +++ +P        L + AGL D V +  G 
Sbjct  1    VEIGTYSGVSTLWLAAALRDNG--LGRLTAVDPDPGAEEAGALLRK-AGLDDRVRLIVGD  57

Query  149  CRKSLHRLAAGTSNKGPSSKKWDILFLD--HSKISYLNDLKLAEELGIVAPGSIVIADD  205
             R++L  LA G           D+LF+D  H+  + LNDL+L      +APG +++  D
Sbjct  58   SREALPSLADGP---------IDLLFIDGDHTYEAVLNDLELWLPR--LAPGGVILFHD  105



Lambda      K        H        a         alpha
   0.318    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00009994

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00009995

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  109     2e-27


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 109 bits (274),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 114/268 (43%), Gaps = 16/268 (6%)

Query  51   KTLKWWQCGLLMICESVSLGVLSLPAAVATLGLVPAVILIVGLGLLATYTGYNIG----L  106
             T+  WQ    +I   +  GVLSLP A   LG +P +IL++ +GL++ YT + +      
Sbjct  1    GTISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKE  60

Query  107  FRERYPRIQNLGDAGEILMGPIGREIFGLGQFLFFIFVMGSHILTFRVMMNTVTE-----  161
                  R ++ GD G  L+GP GR +      L    V  S+++     +  + +     
Sbjct  61   VPVTGKRNKSYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDT  120

Query  162  HGTCSIVFSVVGMVISMVLSIPRTMKGLTWISFASFLSIFGAVMITMISV---GVQDHPG  218
                 + F ++  +I + LS    +  L+ +S  + +S    ++I ++SV    V    G
Sbjct  121  CPISLVYFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQG  180

Query  219  RIIEATV-DTTLYSGFQAVSNIVFAYCAHVAFFGLIAEMENPRDFK---KSLFMLQSFEI  274
                 +  +  L   F A+  IVFA+  H     +  EM+NP  FK   K L        
Sbjct  181  VGHLGSKTNIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIAT  240

Query  275  SLYLTAAVVIYYFVGKDVASPALISAGP  302
             LY+   +V Y   G +V    L++   
Sbjct  241  VLYILIGLVGYLAFGDNVKGNILLNLPK  268



Lambda      K        H        a         alpha
   0.325    0.140    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00009996

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.149    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00010001

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  113     1e-28


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 113 bits (284),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 158/397 (40%), Gaps = 31/397 (8%)

Query  2    ICESVSLGVLSLPAAVATLGLVPAVILIVGLGLLATYTGYNIG----LFRERYPRIQNLG  57
            I   +  GVLSLP A   LG +P +IL++ +GL++ YT + +            R ++ G
Sbjct  13   INAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKEVPVTGKRNKSYG  72

Query  58   DAGEILMGPIGREIFGLGQFLFFIFVMGSHILTFRVMMNTVTE-----HGTCSIVFSVVG  112
            D G  L+GP GR +      L    V  S+++     +  + +          + F ++ 
Sbjct  73   DLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIF  132

Query  113  MVISMVLSIPRTMKGLTWISFASFLSIFGAVMITMISV---GVQDHPGRIIEATV-DTTL  168
             +I + LS    +  L+ +S  + +S    ++I ++SV    V    G     +  +  L
Sbjct  133  GLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKL  192

Query  169  YSGFQAVSNIVFAYCAHVAFFGLIAEMENPRDFK---KSLFMLQSFEISLYLTAAVVIYY  225
               F A+  IVFA+  H     +  EM+NP  FK   K L         LY+   +V Y 
Sbjct  193  AGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYL  252

Query  226  FVGKDVASPALISAGPVMKKVAFGIAIPTIVGAGVVNGH----------VGLKYIYFRLC  275
              G +V    L++     K          ++   V+             V          
Sbjct  253  AFGDNVKGNILLNLP---KSAWLIDIANLLLVLHVILSFPLQLFPIRQIVENLLFRKEAP  309

Query  276  HKSDLIHRRSKRSVGIWIGLGLTCWVVAWIIAEAIPVFSDLNGLISALFASWFSYGLSGI  335
              +   +    + + + I  GL   V+ ++IA ++P F DL  L+ A   +  S+ L  +
Sbjct  310  FGASGKNNPKSKLLRVVIRSGLV--VITYLIAISVPFFGDLLSLVGATSCAPLSFILPPL  367

Query  336  YWLHLNYGQWFASPRKILLTILNISIALFGLALCVLG  372
            + L L   +  +  +     IL++   + GL L   G
Sbjct  368  FHLKLKKTKKKSQEKLWKPDILDVICIVIGLLLMAYG  404



Lambda      K        H        a         alpha
   0.330    0.144    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 446726320


Query= TCONS_00016925

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  71.2    1e-14


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 71.2 bits (175),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 103/279 (37%), Gaps = 27/279 (10%)

Query  1    MGPIGREIFGLGQFLFFIFVMGSHILTFRVMMNTVTE-----HGTCSIVFSVVGMVISMV  55
            +GP GR +      L    V  S+++     +  + +          + F ++  +I + 
Sbjct  79   LGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIFGLIFIP  138

Query  56   LSIPRTMKGLTWISFASFLSIFGAVMITMISV---GVQDHPGRIIEATV-DTTLYSGFQA  111
            LS    +  L+ +S  + +S    ++I ++SV    V    G     +  +  L   F A
Sbjct  139  LSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAGTFLA  198

Query  112  VSNIVFAYCAHVAFFGLIAEMENPRDFK---KSLFMLQSFEISLYLTAAVVIYYFVGKDV  168
            +  IVFA+  H     +  EM+NP  FK   K L         LY+   +V Y   G +V
Sbjct  199  IGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLAFGDNV  258

Query  169  ASPALISAGPVMKKVAFGIAIPTIVGAGVVNGH----------VGLKYIYFRLCHKSDLI  218
                L++     K          ++   V+             V            +   
Sbjct  259  KGNILLNLP---KSAWLIDIANLLLVLHVILSFPLQLFPIRQIVENLLFRKEAPFGASGK  315

Query  219  HRRSKRSVGIWIGLGLTCWVVAWIIAEAIPVFSDLNGLI  257
            +    + + + I  GL   V+ ++IA ++P F DL  L+
Sbjct  316  NNPKSKLLRVVIRSGLV--VITYLIAISVPFFGDLLSLV  352



Lambda      K        H        a         alpha
   0.330    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00009997

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  122     3e-31


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 122 bits (307),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 89/403 (22%), Positives = 160/403 (40%), Gaps = 31/403 (8%)

Query  51   KTLKWWQCGLLMICESVSLGVLSLPAAVATLGLVPAVILIVGLGLLATYTGYNIG----L  106
             T+  WQ    +I   +  GVLSLP A   LG +P +IL++ +GL++ YT + +      
Sbjct  1    GTISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKE  60

Query  107  FRERYPRIQNLGDAGEILMGPIGREIFGLGQFLFFIFVMGSHILTFRVMMNTVTE-----  161
                  R ++ GD G  L+GP GR +      L    V  S+++     +  + +     
Sbjct  61   VPVTGKRNKSYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDT  120

Query  162  HGTCSIVFSVVGMVISMVLSIPRTMKGLTWISFASFLSIFGAVMITMISV---GVQDHPG  218
                 + F ++  +I + LS    +  L+ +S  + +S    ++I ++SV    V    G
Sbjct  121  CPISLVYFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQG  180

Query  219  RIIEATV-DTTLYSGFQAVSNIVFAYCAHVAFFGLIAEMENPRDFK---KSLFMLQSFEI  274
                 +  +  L   F A+  IVFA+  H     +  EM+NP  FK   K L        
Sbjct  181  VGHLGSKTNIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIAT  240

Query  275  SLYLTAAVVIYYFVGKDVASPALISAGPVMKKVAFGIAIPTIVGAGVVNGH---------  325
             LY+   +V Y   G +V    L++     K          ++   V+            
Sbjct  241  VLYILIGLVGYLAFGDNVKGNILLNLP---KSAWLIDIANLLLVLHVILSFPLQLFPIRQ  297

Query  326  -VGLKYIYFRLCHKSDLIHRRSKRSVGIWIGLGLTCWVVAWIIAEAIPVFSDLNGLIVTL  384
             V            +   +    + + + I  GL   V+ ++IA ++P F DL  L+   
Sbjct  298  IVENLLFRKEAPFGASGKNNPKSKLLRVVIRSGLV--VITYLIAISVPFFGDLLSLVGAT  355

Query  385  FASWFSYGLSGIYWLHLNYGQWFASPRKILLTILNISIALFGL  427
              +  S+ L  ++ L L   +  +  +     IL++   + GL
Sbjct  356  SCAPLSFILPPLFHLKLKKTKKKSQEKLWKPDILDVICIVIGL  398



Lambda      K        H        a         alpha
   0.327    0.142    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00016927

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  92.4    5e-22


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 92.4 bits (230),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 109/256 (43%), Gaps = 16/256 (6%)

Query  2    ICESVSLGVLSLPAAVATLGLVPAVILIVGLGLLATYTGYNIG----LFRERYPRIQNLG  57
            I   +  GVLSLP A   LG +P +IL++ +GL++ YT + +            R ++ G
Sbjct  13   INAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKEVPVTGKRNKSYG  72

Query  58   DAGEILMGPIGREIFGLGQFLFFIFVMGSHILTFRVMMNTVTE-----HGTCSIVFSVVG  112
            D G  L+GP GR +      L    V  S+++     +  + +          + F ++ 
Sbjct  73   DLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIF  132

Query  113  MVISMVLSIPRTMKGLTWISFASFLSIFGAVMITMISV---GVQDHPGRIIEATV-DTTL  168
             +I + LS    +  L+ +S  + +S    ++I ++SV    V    G     +  +  L
Sbjct  133  GLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKL  192

Query  169  YSGFQAVSNIVFAYCAHVAFFGLIAEMENPRDFK---KSLFMLQSFEISLYLTAAVVIYY  225
               F A+  IVFA+  H     +  EM+NP  FK   K L         LY+   +V Y 
Sbjct  193  AGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYL  252

Query  226  FVGKDVASPALISAGP  241
              G +V    L++   
Sbjct  253  AFGDNVKGNILLNLPK  268



Lambda      K        H        a         alpha
   0.329    0.143    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00016926

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  72.7    3e-15


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 72.7 bits (179),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 104/281 (37%), Gaps = 27/281 (10%)

Query  1    MGPIGREIFGLGQFLFFIFVMGSHILTFRVMMNTVTE-----HGTCSIVFSVVGMVISMV  55
            +GP GR +      L    V  S+++     +  + +          + F ++  +I + 
Sbjct  79   LGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIFGLIFIP  138

Query  56   LSIPRTMKGLTWISFASFLSIFGAVMITMISV---GVQDHPGRIIEATV-DTTLYSGFQA  111
            LS    +  L+ +S  + +S    ++I ++SV    V    G     +  +  L   F A
Sbjct  139  LSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAGTFLA  198

Query  112  VSNIVFAYCAHVAFFGLIAEMENPRDFK---KSLFMLQSFEISLYLTAAVVIYYFVGKDV  168
            +  IVFA+  H     +  EM+NP  FK   K L         LY+   +V Y   G +V
Sbjct  199  IGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLAFGDNV  258

Query  169  ASPALISAGPVMKKVAFGIAIPTIVGAGVVNGH----------VGLKYIYFRLCHKSDLI  218
                L++     K          ++   V+             V            +   
Sbjct  259  KGNILLNLP---KSAWLIDIANLLLVLHVILSFPLQLFPIRQIVENLLFRKEAPFGASGK  315

Query  219  HRRSKRSVGIWIGLGLTCWVVAWIIAEAIPVFSDLNGLISA  259
            +    + + + I  GL   V+ ++IA ++P F DL  L+ A
Sbjct  316  NNPKSKLLRVVIRSGLV--VITYLIAISVPFFGDLLSLVGA  354



Lambda      K        H        a         alpha
   0.331    0.143    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00009998

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  118     4e-30


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 118 bits (297),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 89/401 (22%), Positives = 159/401 (40%), Gaps = 31/401 (8%)

Query  2    ICESVSLGVLSLPAAVATLGLVPAVILIVGLGLLATYTGYNIG----LFRERYPRIQNLG  57
            I   +  GVLSLP A   LG +P +IL++ +GL++ YT + +            R ++ G
Sbjct  13   INAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKEVPVTGKRNKSYG  72

Query  58   DAGEILMGPIGREIFGLGQFLFFIFVMGSHILTFRVMMNTVTE-----HGTCSIVFSVVG  112
            D G  L+GP GR +      L    V  S+++     +  + +          + F ++ 
Sbjct  73   DLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIF  132

Query  113  MVISMVLSIPRTMKGLTWISFASFLSIFGAVMITMISV---GVQDHPGRIIEATV-DTTL  168
             +I + LS    +  L+ +S  + +S    ++I ++SV    V    G     +  +  L
Sbjct  133  GLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKL  192

Query  169  YSGFQAVSNIVFAYCAHVAFFGLIAEMENPRDFK---KSLFMLQSFEISLYLTAAVVIYY  225
               F A+  IVFA+  H     +  EM+NP  FK   K L         LY+   +V Y 
Sbjct  193  AGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYL  252

Query  226  FVGKDVASPALISAGPVMKKVAFGIAIPTIVGAGVVNGH----------VGLKYIYFRLC  275
              G +V    L++     K          ++   V+             V          
Sbjct  253  AFGDNVKGNILLNLP---KSAWLIDIANLLLVLHVILSFPLQLFPIRQIVENLLFRKEAP  309

Query  276  HKSDLIHRRSKRSVGIWIGLGLTCWVVAWIIAEAIPVFSDLNGLISALFASWFSYGLSGI  335
              +   +    + + + I  GL   V+ ++IA ++P F DL  L+ A   +  S+ L  +
Sbjct  310  FGASGKNNPKSKLLRVVIRSGLV--VITYLIAISVPFFGDLLSLVGATSCAPLSFILPPL  367

Query  336  YWLHLNYGQWFASPRKILLTILNISIALFGLALCVLGLYAS  376
            + L L   +  +  +     IL++   + GL L   G+   
Sbjct  368  FHLKLKKTKKKSQEKLWKPDILDVICIVIGLLLMAYGVAGL  408



Lambda      K        H        a         alpha
   0.329    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00009999

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  109     2e-27


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 109 bits (274),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 114/268 (43%), Gaps = 16/268 (6%)

Query  51   KTLKWWQCGLLMICESVSLGVLSLPAAVATLGLVPAVILIVGLGLLATYTGYNIG----L  106
             T+  WQ    +I   +  GVLSLP A   LG +P +IL++ +GL++ YT + +      
Sbjct  1    GTISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKE  60

Query  107  FRERYPRIQNLGDAGEILMGPIGREIFGLGQFLFFIFVMGSHILTFRVMMNTVTE-----  161
                  R ++ GD G  L+GP GR +      L    V  S+++     +  + +     
Sbjct  61   VPVTGKRNKSYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDT  120

Query  162  HGTCSIVFSVVGMVISMVLSIPRTMKGLTWISFASFLSIFGAVMITMISV---GVQDHPG  218
                 + F ++  +I + LS    +  L+ +S  + +S    ++I ++SV    V    G
Sbjct  121  CPISLVYFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQG  180

Query  219  RIIEATV-DTTLYSGFQAVSNIVFAYCAHVAFFGLIAEMENPRDFK---KSLFMLQSFEI  274
                 +  +  L   F A+  IVFA+  H     +  EM+NP  FK   K L        
Sbjct  181  VGHLGSKTNIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIAT  240

Query  275  SLYLTAAVVIYYFVGKDVASPALISAGP  302
             LY+   +V Y   G +V    L++   
Sbjct  241  VLYILIGLVGYLAFGDNVKGNILLNLPK  268



Lambda      K        H        a         alpha
   0.324    0.140    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00016929

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  92.4    5e-22


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 92.4 bits (230),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 109/256 (43%), Gaps = 16/256 (6%)

Query  2    ICESVSLGVLSLPAAVATLGLVPAVILIVGLGLLATYTGYNIG----LFRERYPRIQNLG  57
            I   +  GVLSLP A   LG +P +IL++ +GL++ YT + +            R ++ G
Sbjct  13   INAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKEVPVTGKRNKSYG  72

Query  58   DAGEILMGPIGREIFGLGQFLFFIFVMGSHILTFRVMMNTVTE-----HGTCSIVFSVVG  112
            D G  L+GP GR +      L    V  S+++     +  + +          + F ++ 
Sbjct  73   DLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIF  132

Query  113  MVISMVLSIPRTMKGLTWISFASFLSIFGAVMITMISV---GVQDHPGRIIEATV-DTTL  168
             +I + LS    +  L+ +S  + +S    ++I ++SV    V    G     +  +  L
Sbjct  133  GLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKL  192

Query  169  YSGFQAVSNIVFAYCAHVAFFGLIAEMENPRDFK---KSLFMLQSFEISLYLTAAVVIYY  225
               F A+  IVFA+  H     +  EM+NP  FK   K L         LY+   +V Y 
Sbjct  193  AGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYL  252

Query  226  FVGKDVASPALISAGP  241
              G +V    L++   
Sbjct  253  AFGDNVKGNILLNLPK  268



Lambda      K        H        a         alpha
   0.329    0.143    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00016928

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  98.5    9e-24


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 98.5 bits (246),  Expect = 9e-24, Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 107/252 (42%), Gaps = 16/252 (6%)

Query  67   VSLGVLSLPAAVATLGLVPYVLQIVGLGLLATYTGYNIG----LFRERYPRIQNLGDAGE  122
            +  GVLSLP A   LG +P ++ ++ +GL++ YT + +            R ++ GD G 
Sbjct  17   IGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKEVPVTGKRNKSYGDLGY  76

Query  123  ILMGPIGREIFGLGQFLFFIFVMGSHILTFRVMMNTVTE-----HGTCSIVFSVVGMVIS  177
             L+GP GR +      L    V  S+++     +  + +          + F ++  +I 
Sbjct  77   RLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIFGLIF  136

Query  178  MVLSIPRTMKGLTWISFASFLSIFGAVMITMISV---GVQDHPGRIIEATV-DTTLYSGF  233
            + LS    +  L+ +S  + +S    ++I ++SV    V    G     +  +  L   F
Sbjct  137  IPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAGTF  196

Query  234  QAVSNIVFAYCAHVAFFGLIAEMENPRDFK---KSLFMLQSFEISLYLTAAVVIYYFVGK  290
             A+  IVFA+  H     +  EM+NP  FK   K L         LY+   +V Y   G 
Sbjct  197  LAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLAFGD  256

Query  291  DVASPALISAGP  302
            +V    L++   
Sbjct  257  NVKGNILLNLPK  268



Lambda      K        H        a         alpha
   0.325    0.140    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00010000

Length=457
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  123     9e-32


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 123 bits (312),  Expect = 9e-32, Method: Composition-based stats.
 Identities = 86/397 (22%), Positives = 157/397 (40%), Gaps = 31/397 (8%)

Query  67   VSLGVLSLPAAVATLGLVPYVLQIVGLGLLATYTGYNIG----LFRERYPRIQNLGDAGE  122
            +  GVLSLP A   LG +P ++ ++ +GL++ YT + +            R ++ GD G 
Sbjct  17   IGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKEVPVTGKRNKSYGDLGY  76

Query  123  ILMGPIGREIFGLGQFLFFIFVMGSHILTFRVMMNTVTE-----HGTCSIVFSVVGMVIS  177
             L+GP GR +      L    V  S+++     +  + +          + F ++  +I 
Sbjct  77   RLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIFGLIF  136

Query  178  MVLSIPRTMKGLTWISFASFLSIFGAVMITMISV---GVQDHPGRIIEATV-DTTLYSGF  233
            + LS    +  L+ +S  + +S    ++I ++SV    V    G     +  +  L   F
Sbjct  137  IPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAGTF  196

Query  234  QAVSNIVFAYCAHVAFFGLIAEMENPRDFK---KSLFMLQSFEISLYLTAAVVIYYFVGK  290
             A+  IVFA+  H     +  EM+NP  FK   K L         LY+   +V Y   G 
Sbjct  197  LAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLAFGD  256

Query  291  DVASPALISAGPVMKKVAFGIAIPTIVGAGVVNGH----------VGLKYIYFRLCHKSD  340
            +V    L++     K          ++   V+             V            + 
Sbjct  257  NVKGNILLNLP---KSAWLIDIANLLLVLHVILSFPLQLFPIRQIVENLLFRKEAPFGAS  313

Query  341  LIHRRSKRSVGIWIGLGLTCWVVAWIIAEAIPVFSDLNGLISALFASWFSYGLSGIYWLH  400
              +    + + + I  GL   V+ ++IA ++P F DL  L+ A   +  S+ L  ++ L 
Sbjct  314  GKNNPKSKLLRVVIRSGLV--VITYLIAISVPFFGDLLSLVGATSCAPLSFILPPLFHLK  371

Query  401  LNYGQWFASPRKILLTILNISIALFGLALCVLGLYAS  437
            L   +  +  +     IL++   + GL L   G+   
Sbjct  372  LKKTKKKSQEKLWKPDILDVICIVIGLLLMAYGVAGL  408



Lambda      K        H        a         alpha
   0.326    0.140    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 562869368


Query= TCONS_00010002

Length=457
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  134     1e-35


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 134 bits (339),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 92/413 (22%), Positives = 164/413 (40%), Gaps = 31/413 (8%)

Query  51   KTLKWWQCGLLMICESVSLGVLSLPAAVATLGLVPAVILIVGLGLLATYTGYNIG----L  106
             T+  WQ    +I   +  GVLSLP A   LG +P +IL++ +GL++ YT + +      
Sbjct  1    GTISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKE  60

Query  107  FRERYPRIQNLGDAGEILMGPIGREIFGLGQFLFFIFVMGSHILTFRVMMNTVTE-----  161
                  R ++ GD G  L+GP GR +      L    V  S+++     +  + +     
Sbjct  61   VPVTGKRNKSYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDT  120

Query  162  HGTCSIVFSVVGMVISMVLSIPRTMKGLTWISFASFLSIFGAVMITMISV---GVQDHPG  218
                 + F ++  +I + LS    +  L+ +S  + +S    ++I ++SV    V    G
Sbjct  121  CPISLVYFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQG  180

Query  219  RIIEATV-DTTLYSGFQAVSNIVFAYCAHVAFFGLIAEMENPRDFK---KSLFMLQSFEI  274
                 +  +  L   F A+  IVFA+  H     +  EM+NP  FK   K L        
Sbjct  181  VGHLGSKTNIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIAT  240

Query  275  SLYLTAAVVIYYFVGKDVASPALISAGPVMKKVAFGIAIPTIVGAGVVNGH---------  325
             LY+   +V Y   G +V    L++     K          ++   V+            
Sbjct  241  VLYILIGLVGYLAFGDNVKGNILLNLP---KSAWLIDIANLLLVLHVILSFPLQLFPIRQ  297

Query  326  -VGLKYIYFRLCHKSDLIHRRSKRSVGIWIGLGLTCWVVAWIIAEAIPVFSDLNGLISAL  384
             V            +   +    + + + I  GL   V+ ++IA ++P F DL  L+ A 
Sbjct  298  IVENLLFRKEAPFGASGKNNPKSKLLRVVIRSGLV--VITYLIAISVPFFGDLLSLVGAT  355

Query  385  FASWFSYGLSGIYWLHLNYGQWFASPRKILLTILNISIALFGLALCVLGLYAS  437
              +  S+ L  ++ L L   +  +  +     IL++   + GL L   G+   
Sbjct  356  SCAPLSFILPPLFHLKLKKTKKKSQEKLWKPDILDVICIVIGLLLMAYGVAGL  408



Lambda      K        H        a         alpha
   0.326    0.140    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 562869368


Query= TCONS_00010003

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  66.2    5e-13


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 66.2 bits (162),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 88/244 (36%), Gaps = 20/244 (8%)

Query  3    TMISVGVQDHPGRIIEATVDTTLYSGFQAVSNIVFAYCAHVAFFGLIAEMENPRDFK---  59
              I +  Q      + +  +  L   F A+  IVFA+  H     +  EM+NP  FK   
Sbjct  172  EGIVLTAQGVG--HLGSKTNIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMT  229

Query  60   KSLFMLQSFEISLYLTAAVVIYYFVGKDVASPALISAGPVMKKVAFGIAIPTIVGAGVVN  119
            K L         LY+   +V Y   G +V    L++     K          ++   V+ 
Sbjct  230  KILLTAIIIATVLYILIGLVGYLAFGDNVKGNILLNLP---KSAWLIDIANLLLVLHVIL  286

Query  120  GH----------VGLKYIYFRLCHKSDLIHRRSKRSVGIWIGLGLTCWVVAWIIAEAIPV  169
                        V            +   +    + + + I  GL   V+ ++IA ++P 
Sbjct  287  SFPLQLFPIRQIVENLLFRKEAPFGASGKNNPKSKLLRVVIRSGLV--VITYLIAISVPF  344

Query  170  FSDLNGLISALFASWFSYGLSGIYWLHLNYGQWFASPRKILLTILNISIALFGLALCVLG  229
            F DL  L+ A   +  S+ L  ++ L L   +  +  +     IL++   + GL L   G
Sbjct  345  FGDLLSLVGATSCAPLSFILPPLFHLKLKKTKKKSQEKLWKPDILDVICIVIGLLLMAYG  404

Query  230  LYAS  233
            +   
Sbjct  405  VAGL  408



Lambda      K        H        a         alpha
   0.327    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0729    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00010004

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00010005

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00010006

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00010007

Length=285


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00010008

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00010009

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00010010

Length=303


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00010011

Length=619


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787563556


Query= TCONS_00016930

Length=619


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787563556


Query= TCONS_00016931

Length=764


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 974951840


Query= TCONS_00010013

Length=781


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 999689424


Query= TCONS_00010012

Length=838


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1066586902


Query= TCONS_00016932

Length=636


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 800810970


Query= TCONS_00010014

Length=580
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  259     2e-81


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 259 bits (665),  Expect = 2e-81, Method: Composition-based stats.
 Identities = 114/406 (28%), Positives = 191/406 (47%), Gaps = 27/406 (7%)

Query  187  ASRVKTFFTLLKAFIGTGIIFLPKAFRNGGILFSSVALVTVAAVTSLCFHLLLECRKGHG  246
             S  +  F L+ A IG G++ LP AF+  G +   + L+ V  ++    HLL+ C K   
Sbjct  3    ISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKEVP  62

Query  247  GGYGDIG------ERIAGPRFRSLILGSIVISQLGFVCTGIIFTADNVRAVLSAVAEHSE  300
                          R+ GP+ R LIL +I+++  G   + +IF  DN+ A+  +  +   
Sbjct  63   VTGKRNKSYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDT--  120

Query  301  KALSTSVLIALQLVVLVPLAFIRNISKLGPAALLADIFILMGLA--YIYYYDIATIASRQ  358
              +S    I +  ++ +PL+FI N+S L   +LLA +  L  +    +   +   + ++ 
Sbjct  121  CPISLVYFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQG  180

Query  359  -GLASSVELFNPKSFTLTIGSCIFTFEGIGLILPIQSSMKHPEKF---DGLLYTVMIIIT  414
             G   S          L IG  +F FEG  ++LPIQ+ MK+P KF     +L T +II T
Sbjct  181  VGHLGSKTNIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIAT  240

Query  415  VLFTAVGALSYGAFGSDTKIEVINNLPQGDKFVNAMQFLYSMAILIGVPVQLFPAVRIME  474
            VL+  +G + Y AFG + K  ++ NLP+    ++    L  + +++  P+QLFP  +I+E
Sbjct  241  VLYILIGLVGYLAFGDNVKGNILLNLPKSAWLIDIANLLLVLHVILSFPLQLFPIRQIVE  300

Query  475  GKLF-----GQVSGKRDPWIKWKKNGFRSLIVLACAVMSAVGAADLDKFVSLIGSFACVP  529
              LF        SGK +P  K  +   RS +V+   ++ A+        +SL+G+ +C P
Sbjct  301  NLLFRKEAPFGASGKNNPKSKLLRVVIRSGLVVITYLI-AISVPFFGDLLSLVGATSCAP  359

Query  530  LVYIYPAYLH-------WKGVADSPLAKFGDLTMVVLGFVFMIYTT  568
            L +I P   H        K           D+  +V+G + M Y  
Sbjct  360  LSFILPPLFHLKLKKTKKKSQEKLWKPDILDVICIVIGLLLMAYGV  405



Lambda      K        H        a         alpha
   0.324    0.139    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 729280864


Query= TCONS_00010015

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  104     5e-29


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 104 bits (261),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 38/133 (29%), Positives = 57/133 (43%), Gaps = 6/133 (5%)

Query  61   PLFIAFTDFAIYWIHRGLHHPAI-YKRLHKPHHRWIISTPYASYAFHPVDGWCQSLPYHV  119
             L +   DF  YW+HR LH     ++R HK HH         +  FHP++    +L   +
Sbjct  2    LLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLFALLVLL  61

Query  120  YPFLFPLQKAAYLGLFVFVTIWTVMIHDGEY----ALDSPVINGSACHTIHHYYFN-YNY  174
               L  L   A+L   +  T+W + IH G       L   ++     H +HH     YN+
Sbjct  62   PLLLLGLPLLAFLLGLLLGTLWYLFIHSGLLFPLPWLLKRLLGTPRFHRLHHSKNEEYNF  121

Query  175  GQFITFWDRIGGS  187
            G     WDR+ G+
Sbjct  122  GVTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.327    0.142    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00010016

Length=335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  106     5e-29


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 106 bits (267),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 38/133 (29%), Positives = 57/133 (43%), Gaps = 6/133 (5%)

Query  159  PLFIAFTDFAIYWIHRGLHHPAI-YKRLHKPHHRWIISTPYASYAFHPVDGWCQSLPYHV  217
             L +   DF  YW+HR LH     ++R HK HH         +  FHP++    +L   +
Sbjct  2    LLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLFALLVLL  61

Query  218  YPFLFPLQKAAYLGLFVFVTIWTVMIHDGEY----ALDSPVINGSACHTIHHYYFN-YNY  272
               L  L   A+L   +  T+W + IH G       L   ++     H +HH     YN+
Sbjct  62   PLLLLGLPLLAFLLGLLLGTLWYLFIHSGLLFPLPWLLKRLLGTPRFHRLHHSKNEEYNF  121

Query  273  GQFITFWDRIGGS  285
            G     WDR+ G+
Sbjct  122  GVTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.328    0.141    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00010017

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40...  120     8e-33


>CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  This 
family includes a range of zinc metallopeptidases belonging 
to several families in the peptidase classification. Family 
M20 are Glutamate carboxypeptidases. Peptidase family M25 contains 
X-His dipeptidases.
Length=315

 Score = 120 bits (304),  Expect = 8e-33, Method: Composition-based stats.
 Identities = 63/237 (27%), Positives = 100/237 (42%), Gaps = 13/237 (5%)

Query  48   AYPLAAHFELHIEQGPILQETGRSIGVVQGAQGYRWFTFTVKGRDTHTGTTPLSARQDPL  107
               + A F LHI +  +L+    +IGVV G +G   F  TVKG+  H  T  L    + +
Sbjct  85   REKVDAVFGLHIGEPTLLEGGI-AIGVVTGHRGSLRFRVTVKGKGGHASTPHL--GVNAI  141

Query  108  LAASRMIAASNDIARK-----HNALASTGIFKIPSNASTNTVASEVSFTLDIRQPQDGVV  162
            +AA+R+I A  DI  +       A+ + G          N +  E     DIR      +
Sbjct  142  VAAARLILALQDIVSRNVDPLDPAVVTVGNITGI-PGGVNVIPGEAELKGDIRLLPGEDL  200

Query  163  HTVQEECLQAFSAIAAQDGKGVTFDWTLDTDSPAVKFDQGCLESIQAAANHLVGPD-QWM  221
              ++E   +   AIAA  G  V  ++      P V  D   + +++ AA  L G   + +
Sbjct  201  EELEERIREILEAIAAAYGVKVEVEYVEGGAPPLVN-DSPLVAALREAAKELFGLKVELI  259

Query  222  NISSGAGHDSVYTSHHCP-TAMIFVPCRDGVSHHPTEYCSPEHCALGAQTLLEAVVH  277
               S  G D+ +     P T + F P   G++H P EY   +    GA+ L   ++ 
Sbjct  260  VSGSMGGTDAAFFLLGVPPTVVFFGPG-SGLAHSPNEYVDLDDLEKGAKVLARLLLK  315



Lambda      K        H        a         alpha
   0.318    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00010021

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  104     5e-29


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 104 bits (261),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 38/133 (29%), Positives = 57/133 (43%), Gaps = 6/133 (5%)

Query  61   PLFIAFTDFAIYWIHRGLHHPAI-YKRLHKPHHRWIISTPYASYAFHPVDGWCQSLPYHV  119
             L +   DF  YW+HR LH     ++R HK HH         +  FHP++    +L   +
Sbjct  2    LLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLFALLVLL  61

Query  120  YPFLFPLQKAAYLGLFVFVTIWTVMIHDGEY----ALDSPVINGSACHTIHHYYFN-YNY  174
               L  L   A+L   +  T+W + IH G       L   ++     H +HH     YN+
Sbjct  62   PLLLLGLPLLAFLLGLLLGTLWYLFIHSGLLFPLPWLLKRLLGTPRFHRLHHSKNEEYNF  121

Query  175  GQFITFWDRIGGS  187
            G     WDR+ G+
Sbjct  122  GVTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.327    0.142    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00010018

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  177     7e-53


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 177 bits (452),  Expect = 7e-53, Method: Composition-based stats.
 Identities = 106/329 (32%), Positives = 146/329 (44%), Gaps = 38/329 (12%)

Query  47   LPGYCPTPLVSLPEIATELGVKAVFVKDESDRFGLPSFKVLGASWGCYRSVVSHLGLSPT  106
              G  PTPLV LP ++ ELGV  V++K ES      SFK  GA                 
Sbjct  2    SLGIGPTPLVRLPRLSKELGVD-VYLKLESLNPTG-SFKDRGALN---------------  44

Query  107  VALDDVKQRLKESPVTLFAATEGNHGRAVAFMARQFGVTARIFVPASMDEETRNRIASEG  166
              L  +K+       T+  A+ GNHGRA+A  A + G+   I VP          + + G
Sbjct  45   -LLLRLKEGEG--GKTVVEASSGNHGRALAAAAARLGLKVTIVVPEDAPPGKLLLMRALG  101

Query  167  AEVAISDGDYNLAVQEAW-IASQNDGGLLVQDTAFDGYEEVPAWIVEGYSTMMTEIDEQL  225
            AEV +  GDY+ AV  A  +A++  G   +     + Y+      +EGY T+  EI E  
Sbjct  102  AEVVLVGGDYDEAVAAARELAAEGPGAYYI-----NQYDNP--LNIEGYGTIGLEILE--  152

Query  226  SQLGLQSTLTVTPVGVGSLGHAVVRHCKSRTTPIAVVAVEPDSGPCLISSLEAGTMVSVT  285
             QLG      V PVG G L   + R  K     + V+ VEP+  P L  SL AG  V V 
Sbjct  153  -QLGGDPDAVVVPVGGGGLIAGIARGLKELGPDVRVIGVEPEGAPALARSLAAGRPVPVP  211

Query  286  SSETIMNGMNCG-TVSATAWPDLQRAVDAAVTVSSYESHCAVQYLAS-HSVRAGPCGGAS  343
             ++TI +G+  G    A A   L   V   VTVS  E+  A++ LA    +   P   A+
Sbjct  212  VADTIADGLGVGDEPGALALDLLDEYVGEVVTVSDEEALEAMRLLARREGIVVEPSSAAA  271

Query  344  LAAIRRLRASGQAASLLHRDAVVVLLCTE  372
            LAA++   A       L     VV++ T 
Sbjct  272  LAALKLALAGE-----LKGGDRVVVVLTG  295



Lambda      K        H        a         alpha
   0.318    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00016933

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  63.2    6e-14


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 63.2 bits (154),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query  61   PLFIAFTDFAIYWIHRGLHHPAI-YKRLHKPHHRWIISTPYASYAFHPVDGWCQSLPYHV  119
             L +   DF  YW+HR LH     ++R HK HH         +  FHP++    +L   +
Sbjct  2    LLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLFALLVLL  61

Query  120  YPFLFPLQKAAYLGLFVFVTIWTVMI  145
               L  L   A+L   +  T+W + I
Sbjct  62   PLLLLGLPLLAFLLGLLLGTLWYLFI  87



Lambda      K        H        a         alpha
   0.332    0.144    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00010019

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  104     5e-29


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 104 bits (261),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 38/133 (29%), Positives = 57/133 (43%), Gaps = 6/133 (5%)

Query  61   PLFIAFTDFAIYWIHRGLHHPAI-YKRLHKPHHRWIISTPYASYAFHPVDGWCQSLPYHV  119
             L +   DF  YW+HR LH     ++R HK HH         +  FHP++    +L   +
Sbjct  2    LLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLFALLVLL  61

Query  120  YPFLFPLQKAAYLGLFVFVTIWTVMIHDGEY----ALDSPVINGSACHTIHHYYFN-YNY  174
               L  L   A+L   +  T+W + IH G       L   ++     H +HH     YN+
Sbjct  62   PLLLLGLPLLAFLLGLLLGTLWYLFIHSGLLFPLPWLLKRLLGTPRFHRLHHSKNEEYNF  121

Query  175  GQFITFWDRIGGS  187
            G     WDR+ G+
Sbjct  122  GVTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.327    0.142    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00010020

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  177     7e-53


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 177 bits (452),  Expect = 7e-53, Method: Composition-based stats.
 Identities = 106/329 (32%), Positives = 146/329 (44%), Gaps = 38/329 (12%)

Query  47   LPGYCPTPLVSLPEIATELGVKAVFVKDESDRFGLPSFKVLGASWGCYRSVVSHLGLSPT  106
              G  PTPLV LP ++ ELGV  V++K ES      SFK  GA                 
Sbjct  2    SLGIGPTPLVRLPRLSKELGVD-VYLKLESLNPTG-SFKDRGALN---------------  44

Query  107  VALDDVKQRLKESPVTLFAATEGNHGRAVAFMARQFGVTARIFVPASMDEETRNRIASEG  166
              L  +K+       T+  A+ GNHGRA+A  A + G+   I VP          + + G
Sbjct  45   -LLLRLKEGEG--GKTVVEASSGNHGRALAAAAARLGLKVTIVVPEDAPPGKLLLMRALG  101

Query  167  AEVAISDGDYNLAVQEAW-IASQNDGGLLVQDTAFDGYEEVPAWIVEGYSTMMTEIDEQL  225
            AEV +  GDY+ AV  A  +A++  G   +     + Y+      +EGY T+  EI E  
Sbjct  102  AEVVLVGGDYDEAVAAARELAAEGPGAYYI-----NQYDNP--LNIEGYGTIGLEILE--  152

Query  226  SQLGLQSTLTVTPVGVGSLGHAVVRHCKSRTTPIAVVAVEPDSGPCLISSLEAGTMVSVT  285
             QLG      V PVG G L   + R  K     + V+ VEP+  P L  SL AG  V V 
Sbjct  153  -QLGGDPDAVVVPVGGGGLIAGIARGLKELGPDVRVIGVEPEGAPALARSLAAGRPVPVP  211

Query  286  SSETIMNGMNCG-TVSATAWPDLQRAVDAAVTVSSYESHCAVQYLAS-HSVRAGPCGGAS  343
             ++TI +G+  G    A A   L   V   VTVS  E+  A++ LA    +   P   A+
Sbjct  212  VADTIADGLGVGDEPGALALDLLDEYVGEVVTVSDEEALEAMRLLARREGIVVEPSSAAA  271

Query  344  LAAIRRLRASGQAASLLHRDAVVVLLCTE  372
            LAA++   A       L     VV++ T 
Sbjct  272  LAALKLALAGE-----LKGGDRVVVVLTG  295



Lambda      K        H        a         alpha
   0.318    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00010024

Length=593
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428673 pfam05920, Homeobox_KN, Homeobox KN domain. This is a ...  75.6    5e-18


>CDD:428673 pfam05920, Homeobox_KN, Homeobox KN domain.  This is a homeobox 
transcription factor KN domain conserved from fungi to human 
and plants. They were first identified as TALE homeobox 
genes in eukaryotes, (including KNOX and MEIS genes). They have 
been recently classified.
Length=39

 Score = 75.6 bits (187),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 24/39 (62%), Positives = 29/39 (74%), Gaps = 0/39 (0%)

Query  234  FRDHRDFPYPSEDEKARLVRETGFSRKRMSTWFANARRR  272
              +H   PYPSE+EKA L +ETG SRK++S WF NARRR
Sbjct  1    LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR  39



Lambda      K        H        a         alpha
   0.317    0.130    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 748708428


Query= TCONS_00010025

Length=593
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428673 pfam05920, Homeobox_KN, Homeobox KN domain. This is a ...  75.6    5e-18


>CDD:428673 pfam05920, Homeobox_KN, Homeobox KN domain.  This is a homeobox 
transcription factor KN domain conserved from fungi to human 
and plants. They were first identified as TALE homeobox 
genes in eukaryotes, (including KNOX and MEIS genes). They have 
been recently classified.
Length=39

 Score = 75.6 bits (187),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 24/39 (62%), Positives = 29/39 (74%), Gaps = 0/39 (0%)

Query  234  FRDHRDFPYPSEDEKARLVRETGFSRKRMSTWFANARRR  272
              +H   PYPSE+EKA L +ETG SRK++S WF NARRR
Sbjct  1    LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR  39



Lambda      K        H        a         alpha
   0.317    0.130    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 748708428


Query= TCONS_00016934

Length=593
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428673 pfam05920, Homeobox_KN, Homeobox KN domain. This is a ...  75.6    5e-18


>CDD:428673 pfam05920, Homeobox_KN, Homeobox KN domain.  This is a homeobox 
transcription factor KN domain conserved from fungi to human 
and plants. They were first identified as TALE homeobox 
genes in eukaryotes, (including KNOX and MEIS genes). They have 
been recently classified.
Length=39

 Score = 75.6 bits (187),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 24/39 (62%), Positives = 29/39 (74%), Gaps = 0/39 (0%)

Query  234  FRDHRDFPYPSEDEKARLVRETGFSRKRMSTWFANARRR  272
              +H   PYPSE+EKA L +ETG SRK++S WF NARRR
Sbjct  1    LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR  39



Lambda      K        H        a         alpha
   0.317    0.130    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0628    0.140     1.90     42.6     43.6 

Effective search space used: 748708428


Query= TCONS_00010022

Length=593
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428673 pfam05920, Homeobox_KN, Homeobox KN domain. This is a ...  75.6    5e-18


>CDD:428673 pfam05920, Homeobox_KN, Homeobox KN domain.  This is a homeobox 
transcription factor KN domain conserved from fungi to human 
and plants. They were first identified as TALE homeobox 
genes in eukaryotes, (including KNOX and MEIS genes). They have 
been recently classified.
Length=39

 Score = 75.6 bits (187),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 24/39 (62%), Positives = 29/39 (74%), Gaps = 0/39 (0%)

Query  234  FRDHRDFPYPSEDEKARLVRETGFSRKRMSTWFANARRR  272
              +H   PYPSE+EKA L +ETG SRK++S WF NARRR
Sbjct  1    LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR  39



Lambda      K        H        a         alpha
   0.317    0.130    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 748708428


Query= TCONS_00010026

Length=332


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00010023

Length=593
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428673 pfam05920, Homeobox_KN, Homeobox KN domain. This is a ...  75.6    5e-18


>CDD:428673 pfam05920, Homeobox_KN, Homeobox KN domain.  This is a homeobox 
transcription factor KN domain conserved from fungi to human 
and plants. They were first identified as TALE homeobox 
genes in eukaryotes, (including KNOX and MEIS genes). They have 
been recently classified.
Length=39

 Score = 75.6 bits (187),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 24/39 (62%), Positives = 29/39 (74%), Gaps = 0/39 (0%)

Query  234  FRDHRDFPYPSEDEKARLVRETGFSRKRMSTWFANARRR  272
              +H   PYPSE+EKA L +ETG SRK++S WF NARRR
Sbjct  1    LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR  39



Lambda      K        H        a         alpha
   0.317    0.130    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 748708428


Query= TCONS_00016935

Length=577


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 724797580


Query= TCONS_00010027

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00010028

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00010029

Length=215


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00010030

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00010031

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00010032

Length=705


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.140    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 902571480


Query= TCONS_00010033

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  151     2e-46


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 151 bits (384),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 53/171 (31%), Positives = 83/171 (49%), Gaps = 9/171 (5%)

Query  1    MVLARMIHFFVPDRRIGIFKPSMLAMIFVVLDLGSFVIQLTGGSMAGAGADHDTMMKGIH  60
            M L R+I        +   +P     IFV  D+ S V+Q  GG +A +         G +
Sbjct  48   MTLGRIIRAL--GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGEN  105

Query  61   IYMGGIGIQEFFIVLFLFIAIQFHRQMLHLNRHGRLVGPKAKWRGLLYALYASLLFITVR  120
            I + G+  Q  F+ +F+ +A  FHR++              +W+  L ALYA+ L I +R
Sbjct  106  IMIAGLAFQVAFLGIFIILAADFHRRVRRSTLRLS-----RRWKLFLLALYAASLLILIR  160

Query  121  IIFRLVEFSSGNDASNPILQHEWYMYVFDAVPMWFSIVVWNVVHPGAIIKG  171
             I+R+ E + G D    ++ HE Y YV D + M  ++V+ NV HPG +  G
Sbjct  161  SIYRVAELAQGWD--GYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPG  209



Lambda      K        H        a         alpha
   0.332    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00010039

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  151     2e-46


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 151 bits (384),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 53/171 (31%), Positives = 83/171 (49%), Gaps = 9/171 (5%)

Query  1    MVLARMIHFFVPDRRIGIFKPSMLAMIFVVLDLGSFVIQLTGGSMAGAGADHDTMMKGIH  60
            M L R+I        +   +P     IFV  D+ S V+Q  GG +A +         G +
Sbjct  48   MTLGRIIRAL--GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGEN  105

Query  61   IYMGGIGIQEFFIVLFLFIAIQFHRQMLHLNRHGRLVGPKAKWRGLLYALYASLLFITVR  120
            I + G+  Q  F+ +F+ +A  FHR++              +W+  L ALYA+ L I +R
Sbjct  106  IMIAGLAFQVAFLGIFIILAADFHRRVRRSTLRLS-----RRWKLFLLALYAASLLILIR  160

Query  121  IIFRLVEFSSGNDASNPILQHEWYMYVFDAVPMWFSIVVWNVVHPGAIIKG  171
             I+R+ E + G D    ++ HE Y YV D + M  ++V+ NV HPG +  G
Sbjct  161  SIYRVAELAQGWD--GYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPG  209



Lambda      K        H        a         alpha
   0.332    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00010034

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  145     1e-44


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 145 bits (368),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 53/171 (31%), Positives = 83/171 (49%), Gaps = 9/171 (5%)

Query  1    MVLARMIHFFVPDRRIGIFKPSMLAMIFVVLDLGSFVIQLTGGSMAGAGADHDTMMKGIH  60
            M L R+I        +   +P     IFV  D+ S V+Q  GG +A +         G +
Sbjct  48   MTLGRIIRAL--GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGEN  105

Query  61   IYMGGIGIQEFFIVLFLFIAIQFHRQMLHLNRHGRLVGPKAKWRGLLYALYASLLFITVR  120
            I + G+  Q  F+ +F+ +A  FHR++              +W+  L ALYA+ L I +R
Sbjct  106  IMIAGLAFQVAFLGIFIILAADFHRRVRRSTLRLS-----RRWKLFLLALYAASLLILIR  160

Query  121  IIFRLVEFSSGNDASNPILQHEWYMYVFDAVPMWFSIVVWNVVHPGAIIKG  171
             I+R+ E + G D    ++ HE Y YV D + M  ++V+ NV HPG +  G
Sbjct  161  SIYRVAELAQGWD--GYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPG  209



Lambda      K        H        a         alpha
   0.334    0.147    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00010036

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  151     2e-46


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 151 bits (384),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 53/171 (31%), Positives = 83/171 (49%), Gaps = 9/171 (5%)

Query  1    MVLARMIHFFVPDRRIGIFKPSMLAMIFVVLDLGSFVIQLTGGSMAGAGADHDTMMKGIH  60
            M L R+I        +   +P     IFV  D+ S V+Q  GG +A +         G +
Sbjct  48   MTLGRIIRAL--GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGEN  105

Query  61   IYMGGIGIQEFFIVLFLFIAIQFHRQMLHLNRHGRLVGPKAKWRGLLYALYASLLFITVR  120
            I + G+  Q  F+ +F+ +A  FHR++              +W+  L ALYA+ L I +R
Sbjct  106  IMIAGLAFQVAFLGIFIILAADFHRRVRRSTLRLS-----RRWKLFLLALYAASLLILIR  160

Query  121  IIFRLVEFSSGNDASNPILQHEWYMYVFDAVPMWFSIVVWNVVHPGAIIKG  171
             I+R+ E + G D    ++ HE Y YV D + M  ++V+ NV HPG +  G
Sbjct  161  SIYRVAELAQGWD--GYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPG  209



Lambda      K        H        a         alpha
   0.332    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00010035

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  151     2e-46


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 151 bits (384),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 53/171 (31%), Positives = 83/171 (49%), Gaps = 9/171 (5%)

Query  1    MVLARMIHFFVPDRRIGIFKPSMLAMIFVVLDLGSFVIQLTGGSMAGAGADHDTMMKGIH  60
            M L R+I        +   +P     IFV  D+ S V+Q  GG +A +         G +
Sbjct  48   MTLGRIIRAL--GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGEN  105

Query  61   IYMGGIGIQEFFIVLFLFIAIQFHRQMLHLNRHGRLVGPKAKWRGLLYALYASLLFITVR  120
            I + G+  Q  F+ +F+ +A  FHR++              +W+  L ALYA+ L I +R
Sbjct  106  IMIAGLAFQVAFLGIFIILAADFHRRVRRSTLRLS-----RRWKLFLLALYAASLLILIR  160

Query  121  IIFRLVEFSSGNDASNPILQHEWYMYVFDAVPMWFSIVVWNVVHPGAIIKG  171
             I+R+ E + G D    ++ HE Y YV D + M  ++V+ NV HPG +  G
Sbjct  161  SIYRVAELAQGWD--GYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPG  209



Lambda      K        H        a         alpha
   0.332    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00010037

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  187     4e-58


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 187 bits (478),  Expect = 4e-58, Method: Composition-based stats.
 Identities = 63/220 (29%), Positives = 103/220 (47%), Gaps = 11/220 (5%)

Query  141  IVMSAAWECVGFVVRTLSTREQQDNTLATITQLFILLSPLLEGVNAFDYMVLARMIHFFV  200
             ++    E +G++ R LS           +  + +LL+P    + A  YM L R+I    
Sbjct  1    FILGCILEVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAF--IAAAIYMTLGRIIRAL-  57

Query  201  PDRRIGIFKPSMLAMIFVVLDLGSFVIQLTGGSMAGAGADHDTMMKGIHIYMGGIGIQEF  260
                +   +P     IFV  D+ S V+Q  GG +A +         G +I + G+  Q  
Sbjct  58   -GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENIMIAGLAFQVA  116

Query  261  FIVLFLFIAIQFHRQMLHLNRHGRLVGPKAKWRGLLYALYASLLFITVRIIFRLVEFSSG  320
            F+ +F+ +A  FHR++              +W+  L ALYA+ L I +R I+R+ E + G
Sbjct  117  FLGIFIILAADFHRRVRRSTLRLS-----RRWKLFLLALYAASLLILIRSIYRVAELAQG  171

Query  321  NDASNPILQHEWYMYVFDAVPMWFSIVVWNVVHPGAIIKG  360
             D    ++ HE Y YV D + M  ++V+ NV HPG +  G
Sbjct  172  WD--GYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPG  209



Lambda      K        H        a         alpha
   0.327    0.142    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 507942834


Query= TCONS_00010038

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  151     2e-46


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 151 bits (384),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 53/171 (31%), Positives = 83/171 (49%), Gaps = 9/171 (5%)

Query  1    MVLARMIHFFVPDRRIGIFKPSMLAMIFVVLDLGSFVIQLTGGSMAGAGADHDTMMKGIH  60
            M L R+I        +   +P     IFV  D+ S V+Q  GG +A +         G +
Sbjct  48   MTLGRIIRAL--GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGEN  105

Query  61   IYMGGIGIQEFFIVLFLFIAIQFHRQMLHLNRHGRLVGPKAKWRGLLYALYASLLFITVR  120
            I + G+  Q  F+ +F+ +A  FHR++              +W+  L ALYA+ L I +R
Sbjct  106  IMIAGLAFQVAFLGIFIILAADFHRRVRRSTLRLS-----RRWKLFLLALYAASLLILIR  160

Query  121  IIFRLVEFSSGNDASNPILQHEWYMYVFDAVPMWFSIVVWNVVHPGAIIKG  171
             I+R+ E + G D    ++ HE Y YV D + M  ++V+ NV HPG +  G
Sbjct  161  SIYRVAELAQGWD--GYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPG  209



Lambda      K        H        a         alpha
   0.332    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00016939

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  151     2e-46


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 151 bits (384),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 53/171 (31%), Positives = 83/171 (49%), Gaps = 9/171 (5%)

Query  1    MVLARMIHFFVPDRRIGIFKPSMLAMIFVVLDLGSFVIQLTGGSMAGAGADHDTMMKGIH  60
            M L R+I        +   +P     IFV  D+ S V+Q  GG +A +         G +
Sbjct  48   MTLGRIIRAL--GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGEN  105

Query  61   IYMGGIGIQEFFIVLFLFIAIQFHRQMLHLNRHGRLVGPKAKWRGLLYALYASLLFITVR  120
            I + G+  Q  F+ +F+ +A  FHR++              +W+  L ALYA+ L I +R
Sbjct  106  IMIAGLAFQVAFLGIFIILAADFHRRVRRSTLRLS-----RRWKLFLLALYAASLLILIR  160

Query  121  IIFRLVEFSSGNDASNPILQHEWYMYVFDAVPMWFSIVVWNVVHPGAIIKG  171
             I+R+ E + G D    ++ HE Y YV D + M  ++V+ NV HPG +  G
Sbjct  161  SIYRVAELAQGWD--GYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPG  209



Lambda      K        H        a         alpha
   0.332    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00016938

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  151     2e-46


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 151 bits (384),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 53/171 (31%), Positives = 83/171 (49%), Gaps = 9/171 (5%)

Query  1    MVLARMIHFFVPDRRIGIFKPSMLAMIFVVLDLGSFVIQLTGGSMAGAGADHDTMMKGIH  60
            M L R+I        +   +P     IFV  D+ S V+Q  GG +A +         G +
Sbjct  48   MTLGRIIRAL--GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGEN  105

Query  61   IYMGGIGIQEFFIVLFLFIAIQFHRQMLHLNRHGRLVGPKAKWRGLLYALYASLLFITVR  120
            I + G+  Q  F+ +F+ +A  FHR++              +W+  L ALYA+ L I +R
Sbjct  106  IMIAGLAFQVAFLGIFIILAADFHRRVRRSTLRLS-----RRWKLFLLALYAASLLILIR  160

Query  121  IIFRLVEFSSGNDASNPILQHEWYMYVFDAVPMWFSIVVWNVVHPGAIIKG  171
             I+R+ E + G D    ++ HE Y YV D + M  ++V+ NV HPG +  G
Sbjct  161  SIYRVAELAQGWD--GYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPG  209



Lambda      K        H        a         alpha
   0.332    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00010040

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  185     5e-58


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 185 bits (472),  Expect = 5e-58, Method: Composition-based stats.
 Identities = 63/220 (29%), Positives = 103/220 (47%), Gaps = 11/220 (5%)

Query  77   IVMSAAWECVGFVVRTLSTREQQDNTLATITQLFILLSPLLEGVNAFDYMVLARMIHFFV  136
             ++    E +G++ R LS           +  + +LL+P    + A  YM L R+I    
Sbjct  1    FILGCILEVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAF--IAAAIYMTLGRIIRAL-  57

Query  137  PDRRIGIFKPSMLAMIFVVLDLGSFVIQLTGGSMAGAGADHDTMMKGIHIYMGGIGIQEF  196
                +   +P     IFV  D+ S V+Q  GG +A +         G +I + G+  Q  
Sbjct  58   -GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENIMIAGLAFQVA  116

Query  197  FIVLFLFIAIQFHRQMLHLNRHGRLVGPKAKWRGLLYALYASLLFITVRIIFRLVEFSSG  256
            F+ +F+ +A  FHR++              +W+  L ALYA+ L I +R I+R+ E + G
Sbjct  117  FLGIFIILAADFHRRVRRSTLRLS-----RRWKLFLLALYAASLLILIRSIYRVAELAQG  171

Query  257  NDASNPILQHEWYMYVFDAVPMWFSIVVWNVVHPGAIIKG  296
             D    ++ HE Y YV D + M  ++V+ NV HPG +  G
Sbjct  172  WD--GYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPG  209



Lambda      K        H        a         alpha
   0.329    0.143    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00016940

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  151     2e-46


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 151 bits (384),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 53/171 (31%), Positives = 83/171 (49%), Gaps = 9/171 (5%)

Query  1    MVLARMIHFFVPDRRIGIFKPSMLAMIFVVLDLGSFVIQLTGGSMAGAGADHDTMMKGIH  60
            M L R+I        +   +P     IFV  D+ S V+Q  GG +A +         G +
Sbjct  48   MTLGRIIRAL--GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGEN  105

Query  61   IYMGGIGIQEFFIVLFLFIAIQFHRQMLHLNRHGRLVGPKAKWRGLLYALYASLLFITVR  120
            I + G+  Q  F+ +F+ +A  FHR++              +W+  L ALYA+ L I +R
Sbjct  106  IMIAGLAFQVAFLGIFIILAADFHRRVRRSTLRLS-----RRWKLFLLALYAASLLILIR  160

Query  121  IIFRLVEFSSGNDASNPILQHEWYMYVFDAVPMWFSIVVWNVVHPGAIIKG  171
             I+R+ E + G D    ++ HE Y YV D + M  ++V+ NV HPG +  G
Sbjct  161  SIYRVAELAQGWD--GYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPG  209



Lambda      K        H        a         alpha
   0.332    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00010042

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00010041

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00010043

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00010047

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  184     6e-58


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 184 bits (470),  Expect = 6e-58, Method: Composition-based stats.
 Identities = 66/208 (32%), Positives = 103/208 (50%), Gaps = 9/208 (4%)

Query  1    MSVRDSLKKLQTDWIDILYLHWWDHTTSIEEIMNSLHILVEQGKVLYLGISDTPAWIVAA  60
             S+ +SLK+L TD+ID+ YLHW D  T IEE  ++L  L ++GK+  +G+S+  A  +  
Sbjct  88   KSLEESLKRLGTDYIDLYYLHWPDPDTPIEETWDALEELKKEGKIRAIGVSNFDAEQIEK  147

Query  61   ANAYAAAVGKTPFCIYQGRWNVMLRDFEREILPMARHFGMALAPWNILGSGKFQTREQVE  120
            A       GK P    Q  +N++ R  E E+L   +  G+ L  ++ LG G    +   +
Sbjct  148  ALTK----GKIPIVAVQVEYNLLRRRQEEELLEYCKKNGIPLIAYSPLGGGLLTGKYTRD  203

Query  121  ERKKKDTTD----NQTEAEIRMSEALANVAAEHGIKSVTAVALAYILCKAPNVFPIVGGR  176
              K            T   +   EAL  +A EHG+ S   VAL + L K     PI G  
Sbjct  204  PDKGPGERRRLLKKGTPLNLEALEALEEIAKEHGV-SPAQVALRWALSKPGVTIPIPGAS  262

Query  177  KVEHLHDNIQALKIKLTEEQIKYLESVN  204
              E L DN+ AL+  L++E++  ++ + 
Sbjct  263  NPEQLEDNLGALEFPLSDEEVARIDELL  290



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00016941

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  184     9e-58


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 184 bits (469),  Expect = 9e-58, Method: Composition-based stats.
 Identities = 70/214 (33%), Positives = 107/214 (50%), Gaps = 11/214 (5%)

Query  1    MSVRDSLKKLQTDWIDILYLHWWDHTTSIEEIMNSLHILVEQGKVLYLGISDTPAWIVAA  60
             S+ +SLK+L TD+ID+ YLHW D  T IEE  ++L  L ++GK+  +G+S+  A  +  
Sbjct  88   KSLEESLKRLGTDYIDLYYLHWPDPDTPIEETWDALEELKKEGKIRAIGVSNFDAEQIEK  147

Query  61   ANAYAAAVGKTPFCIYQGRWNVMLRDFEREILPMARHFGMALAPWNILGSGKFQTREQVE  120
            A       GK P    Q  +N++ R  E E+L   +  G+ L  ++ LG G    +   +
Sbjct  148  ALTK----GKIPIVAVQVEYNLLRRRQEEELLEYCKKNGIPLIAYSPLGGGLLTGKYTRD  203

Query  121  ERKKKGESLRSVFSGDTTDNQTEAEIRMSEALANVAAEHGIKSVTAVALAYILCKAPNVF  180
              K  GE  R +    T  N         EAL  +A EHG+ S   VAL + L K     
Sbjct  204  PDKGPGER-RRLLKKGTPLNLE-----ALEALEEIAKEHGV-SPAQVALRWALSKPGVTI  256

Query  181  PIVGGRKVEHLHDNIQALKIKLTEEQIKYLESVN  214
            PI G    E L DN+ AL+  L++E++  ++ + 
Sbjct  257  PIPGASNPEQLEDNLGALEFPLSDEEVARIDELL  290



Lambda      K        H        a         alpha
   0.320    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00010044

Length=299
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  201     9e-64


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 201 bits (512),  Expect = 9e-64, Method: Composition-based stats.
 Identities = 80/287 (28%), Positives = 122/287 (43%), Gaps = 51/287 (18%)

Query  1    MNKEQVFALLDAYVAAGGNFIDTANAYQNEQSEAWIGEWMSARKNY--------------  46
            ++KE+    L A + AG NFIDTA  Y + +SE  +GE +                    
Sbjct  15   ISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDYPVKRDKVVIATKVPDGD  74

Query  47   --------------------------WIDILYLHWWDHTTSIEEIMNSLHILVEQGKVLY  80
                                      +ID+ YLHW D  T IEE  ++L  L ++GK+  
Sbjct  75   GPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWPDPDTPIEETWDALEELKKEGKIRA  134

Query  81   LGISDTPAWIVAAANAYAAAVGKTPFCIYQGRWNVMLRDFEREILPMARHFGMALAPWNI  140
            +G+S+  A  +  A       GK P    Q  +N++ R  E E+L   +  G+ L  ++ 
Sbjct  135  IGVSNFDAEQIEKALTK----GKIPIVAVQVEYNLLRRRQEEELLEYCKKNGIPLIAYSP  190

Query  141  LGSGKFQTREQVEERKKKGESLRSVFSGDTTDNQTEAEIRMSEALANVAAEHGIKSVTAV  200
            LG G    +   +  K  GE  R +    T  N         EAL  +A EHG+ S   V
Sbjct  191  LGGGLLTGKYTRDPDKGPGER-RRLLKKGTPLNLE-----ALEALEEIAKEHGV-SPAQV  243

Query  201  ALAYILCKAPNVFPIVGGRKVEHLHDNIQALKIKLTEEQIKYLESVN  247
            AL + L K     PI G    E L DN+ AL+  L++E++  ++ + 
Sbjct  244  ALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLSDEEVARIDELL  290



Lambda      K        H        a         alpha
   0.319    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00010046

Length=329
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  194     9e-61


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 194 bits (495),  Expect = 9e-61, Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 117/295 (40%), Gaps = 55/295 (19%)

Query  29   LQLGAMSIGEAWSSFMGTHEQGA------AGGNFIDTANAYQNEQSEAWIGEWMSARKNY  82
            + LG   +G  W          A      AG NFIDTA  Y + +SE  +GE +      
Sbjct  1    IGLGTWQLGGGWGPISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDYPVK  60

Query  83   ----------------------------------------WIDILYLHWWDHTTSIEEIM  102
                                                    +ID+ YLHW D  T IEE  
Sbjct  61   RDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWPDPDTPIEETW  120

Query  103  NSLHILVEQGKVLYLGISDTPAWIVAAANAYAAAVGKTPFCIYQGRWNVMLRDFEREILP  162
            ++L  L ++GK+  +G+S+  A  +  A       GK P    Q  +N++ R  E E+L 
Sbjct  121  DALEELKKEGKIRAIGVSNFDAEQIEKALTK----GKIPIVAVQVEYNLLRRRQEEELLE  176

Query  163  MARHFGMALAPWNILGSGKFQTREQVEERKKKDTTD----NQTEAEIRMSEALANVAAEH  218
              +  G+ L  ++ LG G    +   +  K            T   +   EAL  +A EH
Sbjct  177  YCKKNGIPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGTPLNLEALEALEEIAKEH  236

Query  219  GIKSVTAVALAYILCKAPNVFPIVGGRKVEHLHDNIQALKIKLTEEQIKYLESVN  273
            G+ S   VAL + L K     PI G    E L DN+ AL+  L++E++  ++ + 
Sbjct  237  GV-SPAQVALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLSDEEVARIDELL  290



Lambda      K        H        a         alpha
   0.319    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 385413556


Query= TCONS_00010048

Length=173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family ...  88.0    2e-21


>CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31.  Glycosyl 
hydrolases are key enzymes of carbohydrate metabolism. 
Family 31 comprises of enzymes that are, or similar to, alpha- 
galactosidases.
Length=443

 Score = 88.0 bits (219),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 53/168 (32%), Positives = 63/168 (38%), Gaps = 41/168 (24%)

Query  16   HRHAEYRELYVRWLQWATLLPFMRTLGSRKCNVQNAHTCNNEWWSYGEENTPMIVSYIQL  75
              +    ELYVRW Q     PF R   S         T   E W +GEE   +I   I+L
Sbjct  286  FFNPTTPELYVRWYQLGAFSPFFRNHSSI-------DTRRREPWLFGEEVEEIIRKAIRL  338

Query  76   RYQLKVYLQALFEQIHHTY-------------DAAVTC-----------LACGCLSSGDD  111
            RY+L  YL  LF + H T              D                L    L  G  
Sbjct  339  RYRLLPYLYTLFYEAHETGLPVMRPLFLEFPDDPNTFDIDDQFMFGPSLLVAPVLEEGA-  397

Query  112  TQCTEWEVYLPQKGQSETKPWTYRWTNETYAGGLTVTVPAPIEHVPLF  159
               T  +VYLP         W   WT E Y GG TV V AP++ +PLF
Sbjct  398  ---TSVDVYLPGGR------WYDFWTGERYEGGGTVPVTAPLDRIPLF  436



Lambda      K        H        a         alpha
   0.322    0.136    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00010049

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00010050

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain          62.4    1e-13


>CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain.  
Length=29

 Score = 62.4 bits (153),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 20/29 (69%), Gaps = 0/29 (0%)

Query  25  LYAQCGGEGYSGPTSCVAGAVCTVWNPWY  53
           L+ QCGG G++GPT+C +G  C   N +Y
Sbjct  1   LWGQCGGIGWTGPTTCASGYTCVYQNDYY  29



Lambda      K        H        a         alpha
   0.316    0.130    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 459789232


Query= TCONS_00016942

Length=260


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00010051

Length=305


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00010052

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433424 pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomuta...  129     2e-36
CDD:278869 pfam00463, ICL, Isocitrate lyase family                    94.5    5e-22


>CDD:433424 pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase.  This 
domain includes the enzyme Phosphoenolpyruvate phosphomutase 
(EC:5.4.2.9). This protein has been characterized as catalyzing 
the formation of a carbon-phosphorus bond by converting 
phosphoenolpyruvate (PEP) to phosphonopyruvate (P-Pyr). 
This enzyme has a TIM barrel fold.
Length=241

 Score = 129 bits (327),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 75/253 (30%), Positives = 109/253 (43%), Gaps = 17/253 (7%)

Query  37   RYLRDTDELIVCPGVYDGLSARIAMQLGFRALYMTGAGTTASRLGMADLGLAQLYDMRTN  96
            R L      +V P  +D  SARI    GF A+  + AG  AS LG  D  L    ++   
Sbjct  2    RALHRPGGPLVLPNAWDAASARIVEAAGFPAIATSSAGVAAS-LGYPDGELLPRDELLAA  60

Query  97   AEMIANLDPFGPPLIADMDTGYGG-PLMVAKSVQQYIQAGVAGFHIEDQIQNKRCGHLAG  155
            A  IA       P+ AD++TGYG  P  VA++V++ I AGV G +IED    +  G L  
Sbjct  61   ARRIAAAVDL--PVSADLETGYGDSPEEVAETVRRLIAAGVVGVNIEDSKTGRPGGQL--  116

Query  156  KKVVSMDEYLTRIRAAKQTKDRLRSDIVLIARTDALQQHGYD---ECIRRLKAARDLGAD  212
               + ++E   RIRAA+          V+ ARTDA      D   E IRR +A  + GAD
Sbjct  117  ---LDVEEAAARIRAARAAARAAGVPFVINARTDAFLLGRGDALEEAIRRARAYAEAGAD  173

Query  213  VGLLEGFTSKEMARQAVQDLAPWPLLLNMVENGAGPVITTKEAKEMGFRIMIFSFASLAP  272
               + G          V   A  P  +N++       ++  E   +G   + +       
Sbjct  174  GIFVPGLLDPADIAALV---AAVPGPVNVL--AGPGTLSVAELAALGVARISYGNHLARA  228

Query  273  AYLGIKSALERLK  285
            A   ++ A E + 
Sbjct  229  ALAALRRAAEEIL  241


>CDD:278869 pfam00463, ICL, Isocitrate lyase family.  
Length=526

 Score = 94.5 bits (235),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 46/118 (39%), Positives = 67/118 (57%), Gaps = 13/118 (11%)

Query  85   LGLAQLYDMRTNAE-----------MIANLDPFGPPLIADMDTGYGGPLMVAKSVQQYIQ  133
            L  AQL+  R   E             A +D +  P+IAD DTG+GG   V K  + +I+
Sbjct  117  LFFAQLFHDRKQREERLSMPKEERAKTAYVD-YLRPIIADADTGHGGLTAVVKLTKLFIE  175

Query  134  AGVAGFHIEDQIQ-NKRCGHLAGKKVVSMDEYLTRIRAAKQTKDRLRSDIVLIARTDA  190
             G AG HIEDQ    K+CGH+AGK +V + E++ R+ A +   D + SD++ +ARTD+
Sbjct  176  RGAAGIHIEDQAPGTKKCGHMAGKVLVPIQEHINRLVAIRAQADIMGSDLLAVARTDS  233



Lambda      K        H        a         alpha
   0.320    0.138    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00010053

Length=166
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433424 pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomuta...  59.1    9e-12


>CDD:433424 pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase.  This 
domain includes the enzyme Phosphoenolpyruvate phosphomutase 
(EC:5.4.2.9). This protein has been characterized as catalyzing 
the formation of a carbon-phosphorus bond by converting 
phosphoenolpyruvate (PEP) to phosphonopyruvate (P-Pyr). 
This enzyme has a TIM barrel fold.
Length=241

 Score = 59.1 bits (144),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 8/128 (6%)

Query  1    MDEYLTRIRAAKQTKDRLRSDIVLIARTDALQQHGYD---ECIRRLKAARDLGADVGLLE  57
            ++E   RIRAA+          V+ ARTDA      D   E IRR +A  + GAD   + 
Sbjct  119  VEEAAARIRAARAAARAAGVPFVINARTDAFLLGRGDALEEAIRRARAYAEAGADGIFVP  178

Query  58   GFTSKEMARQAVQDLAPWPLLLNMVENGAGPVITTKEAKEMGFRIMIFSFASLAPAYLGI  117
            G          V   A  P  +N++       ++  E   +G   + +       A   +
Sbjct  179  GLLDPADIAALV---AAVPGPVNVL--AGPGTLSVAELAALGVARISYGNHLARAALAAL  233

Query  118  KSALERLK  125
            + A E + 
Sbjct  234  RRAAEEIL  241



Lambda      K        H        a         alpha
   0.320    0.138    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0741    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00016944

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00010054

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433184 pfam13409, GST_N_2, Glutathione S-transferase, N-termi...  74.2    3e-18
CDD:433190 pfam13417, GST_N_3, Glutathione S-transferase, N-termi...  68.4    5e-16
CDD:460698 pfam02798, GST_N, Glutathione S-transferase, N-termina...  66.9    2e-15


>CDD:433184 pfam13409, GST_N_2, Glutathione S-transferase, N-terminal domain. 
 This family is closely related to pfam02798.
Length=68

 Score = 74.2 bits (183),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 24/67 (36%), Positives = 43/67 (64%), Gaps = 2/67 (3%)

Query  14  CPWAHRAHIALKELGLDYEEVIIDLNT-PREPWYLEINPRGLVPAIS-YNGTIITESAIV  71
            P++HR  +AL+E GL YE  ++DL+   + P  L +NP G VP +   +GT++T+S ++
Sbjct  2   SPFSHRVRLALEEKGLPYEIELVDLDPKDKPPELLALNPLGTVPVLVLPDGTVLTDSLVI  61

Query  72  AQFLADA  78
            ++L + 
Sbjct  62  LEYLEEL  68


>CDD:433190 pfam13417, GST_N_3, Glutathione S-transferase, N-terminal domain. 
 
Length=75

 Score = 68.4 bits (168),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query  8   LYTNHRCPWAHRAHIALKELGLDYEEVIIDLNTPREPWYLEINPRGLVPAISYNGTIITE  67
           LY     P+A R  IAL E GL YE V I       P  L  NP G VP +  +G I+ E
Sbjct  1   LYGFPGSPYARRVRIALNEKGLPYEFVPIPPGDHP-PELLAKNPLGKVPVLEDDGGILCE  59

Query  68  SAIVAQFLADAHP  80
           S  +  +L + +P
Sbjct  60  SLAIIDYLEELYP  72


>CDD:460698 pfam02798, GST_N, Glutathione S-transferase, N-terminal domain. 
 Function: conjugation of reduced glutathione to a variety 
of targets. Also included in the alignment, but not GSTs: 
S-crystallins from squid (similarity to GST previously noted); 
eukaryotic elongation factors 1-gamma (not known to have 
GST activity and similarity not previously recognized); HSP26 
family of stress-related proteins including auxin-regulated 
proteins in plants and stringent starvation proteins in E. 
coli (not known to have GST activity and similarity not previously 
recognized). The glutathione molecule binds in a cleft 
between the N- and C-terminal domains - the catalytically 
important residues are proposed to reside in the N-terminal 
domain.
Length=76

 Score = 66.9 bits (164),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 28/76 (37%), Positives = 40/76 (53%), Gaps = 2/76 (3%)

Query  4   PKITLYTNHRCPWAHRAHIALKELGLDYEEVIIDLNTPRE--PWYLEINPRGLVPAISYN  61
             +TLY     P AHR    L E G++YE V +D     E  P  L++NP G VPA+   
Sbjct  1   MVLTLYGIRGSPRAHRIRWLLAEKGVEYEIVPLDFGAGPEKSPELLKLNPLGKVPALEDG  60

Query  62  GTIITESAIVAQFLAD  77
           G  +TES  + +++A 
Sbjct  61  GKKLTESRAILEYIAR  76



Lambda      K        H        a         alpha
   0.319    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00016945

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00010055

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:379112 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) do...  59.7    5e-12


>CDD:379112 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=139

 Score = 59.7 bits (145),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 42/169 (25%), Positives = 62/169 (37%), Gaps = 32/169 (19%)

Query  17   RLRLVPFDSNFEELSATYVELSSETPEVFQYLPYGPFESPEAYDQWYSNRIR--PTKESI  74
            RL L P     EE +    EL S+ PEV +Y    P  + E   +W +        +   
Sbjct  1    RLLLRPLT---EEDAEALFELLSD-PEVMRYGVPWPL-TLEEAREWLARIWAADEAERGY  55

Query  75   IFAIILKAGIVRKRKPGSDQFEELKVEDGTFAGTTGLIRADPANSVVEVGNVVILPRFHR  134
             +AI LK                    D  F G+ GL   D      E+G   + P +  
Sbjct  56   GWAIELK--------------------DTGFIGSIGLYDIDGEPERAELG-YWLGPDYWG  94

Query  135  TFVGTAAHTLLLTHMLDPPPNGLHLRRVQWQAFSDNQASIAAAQRLGFQ  183
                T A   LL +  +     L L R+  +   +N AS    ++LGF+
Sbjct  95   KGYATEAVRALLEYAFE----ELGLPRLVARIDPENTASRRVLEKLGFK  139



Lambda      K        H        a         alpha
   0.320    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00016946

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433184 pfam13409, GST_N_2, Glutathione S-transferase, N-termi...  73.4    3e-18
CDD:433190 pfam13417, GST_N_3, Glutathione S-transferase, N-termi...  67.3    9e-16
CDD:460698 pfam02798, GST_N, Glutathione S-transferase, N-termina...  66.9    1e-15


>CDD:433184 pfam13409, GST_N_2, Glutathione S-transferase, N-terminal domain. 
 This family is closely related to pfam02798.
Length=68

 Score = 73.4 bits (181),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 24/67 (36%), Positives = 43/67 (64%), Gaps = 2/67 (3%)

Query  14  CPWAHRAHIALKELGLDYEEVIIDLNT-PREPWYLEINPRGLVPAIS-YNGTIITESAIV  71
            P++HR  +AL+E GL YE  ++DL+   + P  L +NP G VP +   +GT++T+S ++
Sbjct  2   SPFSHRVRLALEEKGLPYEIELVDLDPKDKPPELLALNPLGTVPVLVLPDGTVLTDSLVI  61

Query  72  AQFLADA  78
            ++L + 
Sbjct  62  LEYLEEL  68


>CDD:433190 pfam13417, GST_N_3, Glutathione S-transferase, N-terminal domain. 
 
Length=75

 Score = 67.3 bits (165),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query  8   LYTNHRCPWAHRAHIALKELGLDYEEVIIDLNTPREPWYLEINPRGLVPAISYNGTIITE  67
           LY     P+A R  IAL E GL YE V I       P  L  NP G VP +  +G I+ E
Sbjct  1   LYGFPGSPYARRVRIALNEKGLPYEFVPIPPGDHP-PELLAKNPLGKVPVLEDDGGILCE  59

Query  68  SAIVAQFLADAHP  80
           S  +  +L + +P
Sbjct  60  SLAIIDYLEELYP  72


>CDD:460698 pfam02798, GST_N, Glutathione S-transferase, N-terminal domain. 
 Function: conjugation of reduced glutathione to a variety 
of targets. Also included in the alignment, but not GSTs: 
S-crystallins from squid (similarity to GST previously noted); 
eukaryotic elongation factors 1-gamma (not known to have 
GST activity and similarity not previously recognized); HSP26 
family of stress-related proteins including auxin-regulated 
proteins in plants and stringent starvation proteins in E. 
coli (not known to have GST activity and similarity not previously 
recognized). The glutathione molecule binds in a cleft 
between the N- and C-terminal domains - the catalytically 
important residues are proposed to reside in the N-terminal 
domain.
Length=76

 Score = 66.9 bits (164),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 28/76 (37%), Positives = 40/76 (53%), Gaps = 2/76 (3%)

Query  4   PKITLYTNHRCPWAHRAHIALKELGLDYEEVIIDLNTPRE--PWYLEINPRGLVPAISYN  61
             +TLY     P AHR    L E G++YE V +D     E  P  L++NP G VPA+   
Sbjct  1   MVLTLYGIRGSPRAHRIRWLLAEKGVEYEIVPLDFGAGPEKSPELLKLNPLGKVPALEDG  60

Query  62  GTIITESAIVAQFLAD  77
           G  +TES  + +++A 
Sbjct  61  GKKLTESRAILEYIAR  76



Lambda      K        H        a         alpha
   0.321    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00010056

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:379112 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) do...  57.7    2e-11


>CDD:379112 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=139

 Score = 57.7 bits (140),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 61/168 (36%), Gaps = 33/168 (20%)

Query  17   RLRLVPFDSNFEELSATYVELSSETPEVFQYLPYGPFESPEAYDQWYSNRIR--PTKESI  74
            RL L P     EE +    EL S+ PEV +Y    P  + E   +W +        +   
Sbjct  1    RLLLRPLT---EEDAEALFELLSD-PEVMRYGVPWPL-TLEEAREWLARIWAADEAERGY  55

Query  75   IFAIILKAGIVRKRKPGSDQFEELKVEDGTFAGTTGLIRADPANSVVEV--VILPRFHRT  132
             +AI LK                    D  F G+ GL   D      E+   + P +   
Sbjct  56   GWAIELK--------------------DTGFIGSIGLYDIDGEPERAELGYWLGPDYWGK  95

Query  133  FVGTAAHTLLLTHMLDPPPNGLHLRRVQWQAFSDNQASIAAAQRLGFQ  180
               T A   LL +  +     L L R+  +   +N AS    ++LGF+
Sbjct  96   GYATEAVRALLEYAFE----ELGLPRLVARIDPENTASRRVLEKLGFK  139



Lambda      K        H        a         alpha
   0.321    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00016948

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433184 pfam13409, GST_N_2, Glutathione S-transferase, N-termi...  74.2    3e-18
CDD:433190 pfam13417, GST_N_3, Glutathione S-transferase, N-termi...  68.4    5e-16
CDD:460698 pfam02798, GST_N, Glutathione S-transferase, N-termina...  66.9    2e-15


>CDD:433184 pfam13409, GST_N_2, Glutathione S-transferase, N-terminal domain. 
 This family is closely related to pfam02798.
Length=68

 Score = 74.2 bits (183),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 24/67 (36%), Positives = 43/67 (64%), Gaps = 2/67 (3%)

Query  14  CPWAHRAHIALKELGLDYEEVIIDLNT-PREPWYLEINPRGLVPAIS-YNGTIITESAIV  71
            P++HR  +AL+E GL YE  ++DL+   + P  L +NP G VP +   +GT++T+S ++
Sbjct  2   SPFSHRVRLALEEKGLPYEIELVDLDPKDKPPELLALNPLGTVPVLVLPDGTVLTDSLVI  61

Query  72  AQFLADA  78
            ++L + 
Sbjct  62  LEYLEEL  68


>CDD:433190 pfam13417, GST_N_3, Glutathione S-transferase, N-terminal domain. 
 
Length=75

 Score = 68.4 bits (168),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query  8   LYTNHRCPWAHRAHIALKELGLDYEEVIIDLNTPREPWYLEINPRGLVPAISYNGTIITE  67
           LY     P+A R  IAL E GL YE V I       P  L  NP G VP +  +G I+ E
Sbjct  1   LYGFPGSPYARRVRIALNEKGLPYEFVPIPPGDHP-PELLAKNPLGKVPVLEDDGGILCE  59

Query  68  SAIVAQFLADAHP  80
           S  +  +L + +P
Sbjct  60  SLAIIDYLEELYP  72


>CDD:460698 pfam02798, GST_N, Glutathione S-transferase, N-terminal domain. 
 Function: conjugation of reduced glutathione to a variety 
of targets. Also included in the alignment, but not GSTs: 
S-crystallins from squid (similarity to GST previously noted); 
eukaryotic elongation factors 1-gamma (not known to have 
GST activity and similarity not previously recognized); HSP26 
family of stress-related proteins including auxin-regulated 
proteins in plants and stringent starvation proteins in E. 
coli (not known to have GST activity and similarity not previously 
recognized). The glutathione molecule binds in a cleft 
between the N- and C-terminal domains - the catalytically 
important residues are proposed to reside in the N-terminal 
domain.
Length=76

 Score = 66.9 bits (164),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 28/76 (37%), Positives = 40/76 (53%), Gaps = 2/76 (3%)

Query  4   PKITLYTNHRCPWAHRAHIALKELGLDYEEVIIDLNTPRE--PWYLEINPRGLVPAISYN  61
             +TLY     P AHR    L E G++YE V +D     E  P  L++NP G VPA+   
Sbjct  1   MVLTLYGIRGSPRAHRIRWLLAEKGVEYEIVPLDFGAGPEKSPELLKLNPLGKVPALEDG  60

Query  62  GTIITESAIVAQFLAD  77
           G  +TES  + +++A 
Sbjct  61  GKKLTESRAILEYIAR  76



Lambda      K        H        a         alpha
   0.319    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00010057

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433184 pfam13409, GST_N_2, Glutathione S-transferase, N-termi...  74.2    3e-18
CDD:433190 pfam13417, GST_N_3, Glutathione S-transferase, N-termi...  68.4    5e-16
CDD:460698 pfam02798, GST_N, Glutathione S-transferase, N-termina...  66.9    2e-15


>CDD:433184 pfam13409, GST_N_2, Glutathione S-transferase, N-terminal domain. 
 This family is closely related to pfam02798.
Length=68

 Score = 74.2 bits (183),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 24/67 (36%), Positives = 43/67 (64%), Gaps = 2/67 (3%)

Query  14  CPWAHRAHIALKELGLDYEEVIIDLNT-PREPWYLEINPRGLVPAIS-YNGTIITESAIV  71
            P++HR  +AL+E GL YE  ++DL+   + P  L +NP G VP +   +GT++T+S ++
Sbjct  2   SPFSHRVRLALEEKGLPYEIELVDLDPKDKPPELLALNPLGTVPVLVLPDGTVLTDSLVI  61

Query  72  AQFLADA  78
            ++L + 
Sbjct  62  LEYLEEL  68


>CDD:433190 pfam13417, GST_N_3, Glutathione S-transferase, N-terminal domain. 
 
Length=75

 Score = 68.4 bits (168),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query  8   LYTNHRCPWAHRAHIALKELGLDYEEVIIDLNTPREPWYLEINPRGLVPAISYNGTIITE  67
           LY     P+A R  IAL E GL YE V I       P  L  NP G VP +  +G I+ E
Sbjct  1   LYGFPGSPYARRVRIALNEKGLPYEFVPIPPGDHP-PELLAKNPLGKVPVLEDDGGILCE  59

Query  68  SAIVAQFLADAHP  80
           S  +  +L + +P
Sbjct  60  SLAIIDYLEELYP  72


>CDD:460698 pfam02798, GST_N, Glutathione S-transferase, N-terminal domain. 
 Function: conjugation of reduced glutathione to a variety 
of targets. Also included in the alignment, but not GSTs: 
S-crystallins from squid (similarity to GST previously noted); 
eukaryotic elongation factors 1-gamma (not known to have 
GST activity and similarity not previously recognized); HSP26 
family of stress-related proteins including auxin-regulated 
proteins in plants and stringent starvation proteins in E. 
coli (not known to have GST activity and similarity not previously 
recognized). The glutathione molecule binds in a cleft 
between the N- and C-terminal domains - the catalytically 
important residues are proposed to reside in the N-terminal 
domain.
Length=76

 Score = 66.9 bits (164),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 28/76 (37%), Positives = 40/76 (53%), Gaps = 2/76 (3%)

Query  4   PKITLYTNHRCPWAHRAHIALKELGLDYEEVIIDLNTPRE--PWYLEINPRGLVPAISYN  61
             +TLY     P AHR    L E G++YE V +D     E  P  L++NP G VPA+   
Sbjct  1   MVLTLYGIRGSPRAHRIRWLLAEKGVEYEIVPLDFGAGPEKSPELLKLNPLGKVPALEDG  60

Query  62  GTIITESAIVAQFLAD  77
           G  +TES  + +++A 
Sbjct  61  GKKLTESRAILEYIAR  76



Lambda      K        H        a         alpha
   0.319    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00010058

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463889 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrola...  71.8    1e-15


>CDD:463889 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family. 
 This family of presumed lipases and related enzymes are 
similar to pfam00657.
Length=176

 Score = 71.8 bits (176),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 57/205 (28%), Gaps = 41/205 (20%)

Query  97   IIGDSLSSG--DFATYEGLSSW-AYDFAAGLGNVEYSITAYPGICLHDQNCWGNPRGQAY  153
             +GDS+++G            W A   A  LG    +     G                 
Sbjct  1    ALGDSITAGYGATGGDRSYPGWLARLLARRLGADVVNNLGISG-----------------  43

Query  154  QWYRTSDTSWRAHEIYGDNPPKWNFAAQRPADLVVINIGTNDNNPANNVSSTDYYNDYIT  213
                T+                 +   +   DLVVI +GTND      VS+     +   
Sbjct  44   ---ATTRLDLLER---------LDDVLRLKPDLVVILLGTNDL--GRGVSAARAAANLEA  89

Query  214  LVGNIHKIWPKADIVLMSLWGGFGASGDTYVQGPLWVDEIKRVYQHYEKQGFIHYFDTAG  273
            L+  +    P A ++L+              +    + E     +    +  + Y D   
Sbjct  90   LIDALRAAGPDARVLLIGPLPVGPPPPLDERRLNARIAEYNAAIREVAAERGVPYVDLWD  149

Query  274  ILQHNDIAPQW-------HPTDVGH  291
             L+ +             HP   G+
Sbjct  150  ALRDDGGWLPDLLADDGLHPNAAGY  174



Lambda      K        H        a         alpha
   0.319    0.136    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00010059

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463889 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrola...  72.6    1e-15


>CDD:463889 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family. 
 This family of presumed lipases and related enzymes are 
similar to pfam00657.
Length=176

 Score = 72.6 bits (178),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 57/205 (28%), Gaps = 41/205 (20%)

Query  178  IIGDSLSSG--DFATYEGLSSW-AYDFAAGLGNVEYSITAYPGICLHDQNCWGNPRGQAY  234
             +GDS+++G            W A   A  LG    +     G                 
Sbjct  1    ALGDSITAGYGATGGDRSYPGWLARLLARRLGADVVNNLGISG-----------------  43

Query  235  QWYRTSDTSWRAHEIYGDNPPKWNFAAQRPADLVVINIGTNDNNPANNVSSTDYYNDYIT  294
                T+                 +   +   DLVVI +GTND      VS+     +   
Sbjct  44   ---ATTRLDLLER---------LDDVLRLKPDLVVILLGTNDL--GRGVSAARAAANLEA  89

Query  295  LVGNIHKIWPKADIVLMSLWGGFGASGDTYVQGPLWVDEIKRVYQHYEKQGFIHYFDTAG  354
            L+  +    P A ++L+              +    + E     +    +  + Y D   
Sbjct  90   LIDALRAAGPDARVLLIGPLPVGPPPPLDERRLNARIAEYNAAIREVAAERGVPYVDLWD  149

Query  355  ILQHNDIAPQW-------HPTDVGH  372
             L+ +             HP   G+
Sbjct  150  ALRDDGGWLPDLLADDGLHPNAAGY  174



Lambda      K        H        a         alpha
   0.318    0.135    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500176124


Query= TCONS_00010060

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00010061

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00010062

Length=478


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00010063

Length=482


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 591999806


Query= TCONS_00010064

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00016950

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00016951

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00016952

Length=23


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 75925852


Query= TCONS_00010065

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00010066

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  108     1e-28


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 108 bits (272),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 51/167 (31%), Positives = 66/167 (40%), Gaps = 59/167 (35%)

Query  386  GDQHRILQVLINLVSNSLKFTPEHGKVEVRIKCVREAETPGSPRTSLQDSRRNSRLRSQP  445
            GD+ R+ QVL NL+ N+LK   + G++ V +    E                        
Sbjct  1    GDELRLRQVLSNLLDNALKHAAKAGEITVTLSEGGELT----------------------  38

Query  446  PSHDSSQPRDPVDGLVQEEYHTPVLSQLRTLIFQFEVEDNGPGVAPHLQKRVFEPFVQGD  505
                                                VEDNG G+ P    R+FEPF   D
Sbjct  39   ----------------------------------LTVEDNGIGIPPEDLPRIFEPFSTAD  64

Query  506  LGLNRKYGGTGLGLSICAQLSRLMNGKITLESEPGKGALFTVEIPLK  552
                R  GGTGLGLSI  +L  L+ G IT+ESEPG G   T+ +PL 
Sbjct  65   ---KRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLA  108



Lambda      K        H        a         alpha
   0.316    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 862752150


Query= TCONS_00010068

Length=266


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00010067

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00010069

Length=365


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00010070

Length=305


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00010071

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00010072

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00010074

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425821 pfam00686, CBM_20, Starch binding domain                   145     4e-46


>CDD:425821 pfam00686, CBM_20, Starch binding domain.  
Length=95

 Score = 145 bits (369),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 64/96 (67%), Positives = 77/96 (80%), Gaps = 1/96 (1%)

Query  111  VAVTFNEIATTTYGENVYIVGSISELGNWDTSKAVALSASKYTSSNNLWYVSVTLPAGTT  170
            V+VTFN  ATT YG++VYIVGSI ELGNW+  KA+ALSAS+Y SS  LW  +V+LPAGTT
Sbjct  1    VSVTFNVNATTQYGQSVYIVGSIPELGNWNPKKAIALSASEY-SSYPLWSGTVSLPAGTT  59

Query  171  FEYKYIRKESDGSIVWESDPNRSYTVPAACGVSTAT  206
             EYKYI+ +SDGS+ WES PNRSYTVPA+   +T T
Sbjct  60   IEYKYIKVDSDGSVTWESGPNRSYTVPASGASTTTT  95



Lambda      K        H        a         alpha
   0.306    0.118    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00010073

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425821 pfam00686, CBM_20, Starch binding domain                   145     4e-46


>CDD:425821 pfam00686, CBM_20, Starch binding domain.  
Length=95

 Score = 145 bits (369),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 64/96 (67%), Positives = 77/96 (80%), Gaps = 1/96 (1%)

Query  111  VAVTFNEIATTTYGENVYIVGSISELGNWDTSKAVALSASKYTSSNNLWYVSVTLPAGTT  170
            V+VTFN  ATT YG++VYIVGSI ELGNW+  KA+ALSAS+Y SS  LW  +V+LPAGTT
Sbjct  1    VSVTFNVNATTQYGQSVYIVGSIPELGNWNPKKAIALSASEY-SSYPLWSGTVSLPAGTT  59

Query  171  FEYKYIRKESDGSIVWESDPNRSYTVPAACGVSTAT  206
             EYKYI+ +SDGS+ WES PNRSYTVPA+   +T T
Sbjct  60   IEYKYIKVDSDGSVTWESGPNRSYTVPASGASTTTT  95



Lambda      K        H        a         alpha
   0.306    0.118    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00016954

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00010076

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00010078

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  211     7e-67


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 211 bits (539),  Expect = 7e-67, Method: Composition-based stats.
 Identities = 82/304 (27%), Positives = 121/304 (40%), Gaps = 49/304 (16%)

Query  63   GSWQGIINHLDYIQGMGFTAIWITPVTEQFYENTGDGTSYHGYWQQNIHEVNANYGTAQD  122
            G  QGII  LDY++ +G TAIW++P+ +          + HGY   + ++++ +YGT +D
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLSPIFDS-------PQADHGYDIADYYKIDPHYGTMED  53

Query  123  LRDLANALHARGMYLMVDVVANHMGYNGAGNSVNYGVFTPFDSATYF--------HPYCL  174
             ++L +  H RG+ +++D+V NH     A    +           YF         P   
Sbjct  54   FKELISKAHERGIKVILDLVVNHTSDEHAWFQESRSSKDNPYRDYYFWRPGGGPIPPNNW  113

Query  175  ITDYNNQTAVEDCWLGDT------TVSLPDLDTTSTAVRSIWYDWVKGLVANYSIDGLRI  228
             + Y   +A      G            PDL+  +  VR+  YD V     +  IDG RI
Sbjct  114  RS-YFGGSAWTYDEKGQEYYLHLFVAGQPDLNWENPEVRNELYD-VVRFWLDKGIDGFRI  171

Query  229  DTVKHVEKD----------FWPGYNDAAG--------VYCVGEVFSGDPQ--YTCPYQNY  268
            D VKH+ K           FW  +  A          V  VGEVF GD +       +  
Sbjct  172  DVVKHISKVPGLPFENNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDGEWARVYTTEAR  231

Query  269  LDG--VLNYPIYYQLLYAF---QSTSGSISNLYNMISSVASDCADP-TLLGNFIENHDNP  322
            ++     N+P     L  F        S   L  MI+       D       F+ NHD P
Sbjct  232  MELEMGFNFPHNDVALKPFIKWDLAPISARKLKEMITDWLDALPDTNGWNFTFLGNHDQP  291

Query  323  RFAS  326
            RF S
Sbjct  292  RFLS  295



Lambda      K        H        a         alpha
   0.320    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00010077

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  179     1e-55


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 179 bits (456),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 74/289 (26%), Positives = 111/289 (38%), Gaps = 49/289 (17%)

Query  1    MGFTAIWITPVTEQFYENTGDGTSYHGYWQQNIHEVNANYGTAQDLRDLANALHARGMYL  60
            +G TAIW++P+ +          + HGY   + ++++ +YGT +D ++L +  H RG+ +
Sbjct  16   LGVTAIWLSPIFDS-------PQADHGYDIADYYKIDPHYGTMEDFKELISKAHERGIKV  68

Query  61   MVDVVANHMGYNGAGNSVNYGVFTPFDSATYF--------HPYCLITDYNNQTAVEDCWL  112
            ++D+V NH     A    +           YF         P    + Y   +A      
Sbjct  69   ILDLVVNHTSDEHAWFQESRSSKDNPYRDYYFWRPGGGPIPPNNWRS-YFGGSAWTYDEK  127

Query  113  GDT------TVSLPDLDTTSTAVRSIWYDWVKGLVANYSIDGLRIDTVKHVEKD------  160
            G            PDL+  +  VR+  YD V     +  IDG RID VKH+ K       
Sbjct  128  GQEYYLHLFVAGQPDLNWENPEVRNELYD-VVRFWLDKGIDGFRIDVVKHISKVPGLPFE  186

Query  161  ----FWPGYNDAAG--------VYCVGEVFSGDPQ--YTCPYQNYLDG--VLNYPIYYQL  204
                FW  +  A          V  VGEVF GD +       +  ++     N+P     
Sbjct  187  NNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDGEWARVYTTEARMELEMGFNFPHNDVA  246

Query  205  LYAF---QSTSGSISNLYNMISSVASDCADP-TLLGNFIENHDNPRFAS  249
            L  F        S   L  MI+       D       F+ NHD PRF S
Sbjct  247  LKPFIKWDLAPISARKLKEMITDWLDALPDTNGWNFTFLGNHDQPRFLS  295



Lambda      K        H        a         alpha
   0.319    0.136    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00010079

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  211     7e-67


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 211 bits (539),  Expect = 7e-67, Method: Composition-based stats.
 Identities = 82/304 (27%), Positives = 121/304 (40%), Gaps = 49/304 (16%)

Query  63   GSWQGIINHLDYIQGMGFTAIWITPVTEQFYENTGDGTSYHGYWQQNIHEVNANYGTAQD  122
            G  QGII  LDY++ +G TAIW++P+ +          + HGY   + ++++ +YGT +D
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLSPIFDS-------PQADHGYDIADYYKIDPHYGTMED  53

Query  123  LRDLANALHARGMYLMVDVVANHMGYNGAGNSVNYGVFTPFDSATYF--------HPYCL  174
             ++L +  H RG+ +++D+V NH     A    +           YF         P   
Sbjct  54   FKELISKAHERGIKVILDLVVNHTSDEHAWFQESRSSKDNPYRDYYFWRPGGGPIPPNNW  113

Query  175  ITDYNNQTAVEDCWLGDT------TVSLPDLDTTSTAVRSIWYDWVKGLVANYSIDGLRI  228
             + Y   +A      G            PDL+  +  VR+  YD V     +  IDG RI
Sbjct  114  RS-YFGGSAWTYDEKGQEYYLHLFVAGQPDLNWENPEVRNELYD-VVRFWLDKGIDGFRI  171

Query  229  DTVKHVEKD----------FWPGYNDAAG--------VYCVGEVFSGDPQ--YTCPYQNY  268
            D VKH+ K           FW  +  A          V  VGEVF GD +       +  
Sbjct  172  DVVKHISKVPGLPFENNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDGEWARVYTTEAR  231

Query  269  LDG--VLNYPIYYQLLYAF---QSTSGSISNLYNMISSVASDCADP-TLLGNFIENHDNP  322
            ++     N+P     L  F        S   L  MI+       D       F+ NHD P
Sbjct  232  MELEMGFNFPHNDVALKPFIKWDLAPISARKLKEMITDWLDALPDTNGWNFTFLGNHDQP  291

Query  323  RFAS  326
            RF S
Sbjct  292  RFLS  295



Lambda      K        H        a         alpha
   0.320    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00016955

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF196...  148     1e-44
CDD:425821 pfam00686, CBM_20, Starch binding domain                   144     3e-43
CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  121     1e-31


>CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF1966).  This 
domain is found in various fungal alpha-amylase proteins. 
Its exact function has not, as yet, been defined.
Length=90

 Score = 148 bits (375),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 65/91 (71%), Positives = 76/91 (84%), Gaps = 1/91 (1%)

Query  193  PFYYDSNTLAMRKGSVAGSQVITVLSNKGSSGSSYTLSLSGTGYSAGATLVEMYTCTTLT  252
            P Y DS+TLAMRKG   GSQV+TVLSN+GSSG SYTLSL GTGY+AG ++VE+ +CTT+T
Sbjct  1    PIYSDSSTLAMRKGP-EGSQVVTVLSNQGSSGGSYTLSLPGTGYNAGTSVVEVLSCTTVT  59

Query  253  VDSSGNLAVPMVSGLPRVFVPSSWVSGSGLC  283
            VDSSGNL VPM SG PRV  P+S +SGSGLC
Sbjct  60   VDSSGNLTVPMDSGEPRVLFPASLLSGSGLC  90


>CDD:425821 pfam00686, CBM_20, Starch binding domain.  
Length=95

 Score = 144 bits (366),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 68/96 (71%), Gaps = 1/96 (1%)

Query  313  IPILFEELVTTTYGESIYLTGSISQLGNWDTSSAIALSASKYTSSNPEWYVTVTLPVGTS  372
            + + F    TT YG+S+Y+ GSI +LGNW+   AIALSAS+Y SS P W  TV+LP GT+
Sbjct  1    VSVTFNVNATTQYGQSVYIVGSIPELGNWNPKKAIALSASEY-SSYPLWSGTVSLPAGTT  59

Query  373  FEYKFVKKGSDGSIAWESDPNRSYTVPTGCAGTTVT  408
             EYK++K  SDGS+ WES PNRSYTVP   A TT T
Sbjct  60   IEYKYIKVDSDGSVTWESGPNRSYTVPASGASTTTT  95


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 121 bits (305),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 50/169 (30%), Positives = 65/169 (38%), Gaps = 27/169 (16%)

Query  7    VDGLRIDTVKHVEKD----------FWPGYNDAAG--------VYCVGEVFSGDPQ--YT  46
            +DG RID VKH+ K           FW  +  A          V  VGEVF GD +    
Sbjct  166  IDGFRIDVVKHISKVPGLPFENNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDGEWARV  225

Query  47   CPYQNYLDG--VLNYPIYYQLLYAF---QSTSGSISNLYNMISSVASDCADP-TLLGNFI  100
               +  ++     N+P     L  F        S   L  MI+       D       F+
Sbjct  226  YTTEARMELEMGFNFPHNDVALKPFIKWDLAPISARKLKEMITDWLDALPDTNGWNFTFL  285

Query  101  ENHDNPRFASYTSDYS-QAKNVISFMFFSDGIPIVYAGQEQHYSGGADP  148
             NHD PRF S   D    AK +  F+    G P +Y G+E   +GG DP
Sbjct  286  GNHDQPRFLSRFGDDRASAKLLAVFLLTLRGTPYIYQGEEIGMTGGNDP  334



Lambda      K        H        a         alpha
   0.313    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00016956

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF196...  143     5e-44
CDD:425821 pfam00686, CBM_20, Starch binding domain                   140     4e-43


>CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF1966).  This 
domain is found in various fungal alpha-amylase proteins. 
Its exact function has not, as yet, been defined.
Length=90

 Score = 143 bits (362),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 65/91 (71%), Positives = 76/91 (84%), Gaps = 1/91 (1%)

Query  69   PFYYDSNTLAMRKGSVAGSQVITVLSNKGSSGSSYTLSLSGTGYSAGATLVEMYTCTTLT  128
            P Y DS+TLAMRKG   GSQV+TVLSN+GSSG SYTLSL GTGY+AG ++VE+ +CTT+T
Sbjct  1    PIYSDSSTLAMRKGP-EGSQVVTVLSNQGSSGGSYTLSLPGTGYNAGTSVVEVLSCTTVT  59

Query  129  VDSSGNLAVPMVSGLPRVFVPSSWVSGSGLC  159
            VDSSGNL VPM SG PRV  P+S +SGSGLC
Sbjct  60   VDSSGNLTVPMDSGEPRVLFPASLLSGSGLC  90


>CDD:425821 pfam00686, CBM_20, Starch binding domain.  
Length=95

 Score = 140 bits (356),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 68/96 (71%), Gaps = 1/96 (1%)

Query  189  IPILFEELVTTTYGESIYLTGSISQLGNWDTSSAIALSASKYTSSNPEWYVTVTLPVGTS  248
            + + F    TT YG+S+Y+ GSI +LGNW+   AIALSAS+Y SS P W  TV+LP GT+
Sbjct  1    VSVTFNVNATTQYGQSVYIVGSIPELGNWNPKKAIALSASEY-SSYPLWSGTVSLPAGTT  59

Query  249  FEYKFVKKGSDGSIAWESDPNRSYTVPTGCAGTTVT  284
             EYK++K  SDGS+ WES PNRSYTVP   A TT T
Sbjct  60   IEYKYIKVDSDGSVTWESGPNRSYTVPASGASTTTT  95



Lambda      K        H        a         alpha
   0.311    0.124    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00010082

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF196...  145     3e-44
CDD:425821 pfam00686, CBM_20, Starch binding domain                   142     3e-43
CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  70.8    2e-14


>CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF1966).  This 
domain is found in various fungal alpha-amylase proteins. 
Its exact function has not, as yet, been defined.
Length=90

 Score = 145 bits (367),  Expect = 3e-44, Method: Composition-based stats.
 Identities = 65/91 (71%), Positives = 76/91 (84%), Gaps = 1/91 (1%)

Query  112  PFYYDSNTLAMRKGSVAGSQVITVLSNKGSSGSSYTLSLSGTGYSAGATLVEMYTCTTLT  171
            P Y DS+TLAMRKG   GSQV+TVLSN+GSSG SYTLSL GTGY+AG ++VE+ +CTT+T
Sbjct  1    PIYSDSSTLAMRKGP-EGSQVVTVLSNQGSSGGSYTLSLPGTGYNAGTSVVEVLSCTTVT  59

Query  172  VDSSGNLAVPMVSGLPRVFVPSSWVSGSGLC  202
            VDSSGNL VPM SG PRV  P+S +SGSGLC
Sbjct  60   VDSSGNLTVPMDSGEPRVLFPASLLSGSGLC  90


>CDD:425821 pfam00686, CBM_20, Starch binding domain.  
Length=95

 Score = 142 bits (361),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 68/96 (71%), Gaps = 1/96 (1%)

Query  232  IPILFEELVTTTYGESIYLTGSISQLGNWDTSSAIALSASKYTSSNPEWYVTVTLPVGTS  291
            + + F    TT YG+S+Y+ GSI +LGNW+   AIALSAS+Y SS P W  TV+LP GT+
Sbjct  1    VSVTFNVNATTQYGQSVYIVGSIPELGNWNPKKAIALSASEY-SSYPLWSGTVSLPAGTT  59

Query  292  FEYKFVKKGSDGSIAWESDPNRSYTVPTGCAGTTVT  327
             EYK++K  SDGS+ WES PNRSYTVP   A TT T
Sbjct  60   IEYKYIKVDSDGSVTWESGPNRSYTVPASGASTTTT  95


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 70.8 bits (174),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 24/69 (35%), Positives = 31/69 (45%), Gaps = 2/69 (3%)

Query  1    MISSVASDCADP-TLLGNFIENHDNPRFASYTSDYS-QAKNVISFMFFSDGIPIVYAGQE  58
            MI+       D       F+ NHD PRF S   D    AK +  F+    G P +Y G+E
Sbjct  266  MITDWLDALPDTNGWNFTFLGNHDQPRFLSRFGDDRASAKLLAVFLLTLRGTPYIYQGEE  325

Query  59   QHYSGGADP  67
               +GG DP
Sbjct  326  IGMTGGNDP  334



Lambda      K        H        a         alpha
   0.311    0.124    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00016957

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  182     2e-56


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 182 bits (464),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 67/254 (26%), Positives = 105/254 (41%), Gaps = 45/254 (18%)

Query  63   GSWQGIINHLDYIQGMGFTAIWITPVTEQFYENTGDGTSYHGYWQQNIHEVNANYGTAQD  122
            G  QGII  LDY++ +G TAIW++P+ +          + HGY   + ++++ +YGT +D
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLSPIFDS-------PQADHGYDIADYYKIDPHYGTMED  53

Query  123  LRDLANALHARGMYLMVDVVANHMGYNGAGNSVNYGVFTPFDSATYF--------HPYCL  174
             ++L +  H RG+ +++D+V NH     A    +           YF         P   
Sbjct  54   FKELISKAHERGIKVILDLVVNHTSDEHAWFQESRSSKDNPYRDYYFWRPGGGPIPPNNW  113

Query  175  ITDYNNQTAVEDCWLGDT------TVSLPDLDTTSTAVRSIWYDWVKGLVANYSIDGLRI  228
             + Y   +A      G            PDL+  +  VR+  YD V     +  IDG RI
Sbjct  114  RS-YFGGSAWTYDEKGQEYYLHLFVAGQPDLNWENPEVRNELYD-VVRFWLDKGIDGFRI  171

Query  229  DTVKHVEKD----------FWPGYNDAAG--------VYCVGEVFSGDPQ--YTCPYQNY  268
            D VKH+ K           FW  +  A          V  VGEVF GD +       +  
Sbjct  172  DVVKHISKVPGLPFENNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDGEWARVYTTEAR  231

Query  269  LDG--VLNYPMYAL  280
            ++     N+P   +
Sbjct  232  MELEMGFNFPHNDV  245



Lambda      K        H        a         alpha
   0.321    0.137    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00010080

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  224     2e-69
CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF196...  150     1e-44
CDD:425821 pfam00686, CBM_20, Starch binding domain                   144     3e-42


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 224 bits (574),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 87/328 (27%), Positives = 129/328 (39%), Gaps = 50/328 (15%)

Query  1    MGFTAIWITPVTEQFYENTGDGTSYHGYWQQNIHEVNANYGTAQDLRDLANALHARGMYL  60
            +G TAIW++P+ +          + HGY   + ++++ +YGT +D ++L +  H RG+ +
Sbjct  16   LGVTAIWLSPIFDS-------PQADHGYDIADYYKIDPHYGTMEDFKELISKAHERGIKV  68

Query  61   MVDVVANHMGYNGAGNSVNYGVFTPFDSATYF--------HPYCLITDYNNQTAVEDCWL  112
            ++D+V NH     A    +           YF         P    + Y   +A      
Sbjct  69   ILDLVVNHTSDEHAWFQESRSSKDNPYRDYYFWRPGGGPIPPNNWRS-YFGGSAWTYDEK  127

Query  113  GDT------TVSLPDLDTTSTAVRSIWYDWVKGLVANYSIDGLRIDTVKHVEKD------  160
            G            PDL+  +  VR+  YD V     +  IDG RID VKH+ K       
Sbjct  128  GQEYYLHLFVAGQPDLNWENPEVRNELYD-VVRFWLDKGIDGFRIDVVKHISKVPGLPFE  186

Query  161  ----FWPGYNDAAG--------VYCVGEVFSGDPQ--YTCPYQNYLDG--VLNYPIYYQL  204
                FW  +  A          V  VGEVF GD +       +  ++     N+P     
Sbjct  187  NNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDGEWARVYTTEARMELEMGFNFPHNDVA  246

Query  205  LYAF---QSTSGSISNLYNMISSVASDCADP-TLLGNFIENHDNPRFASYTSDYS-QAKN  259
            L  F        S   L  MI+       D       F+ NHD PRF S   D    AK 
Sbjct  247  LKPFIKWDLAPISARKLKEMITDWLDALPDTNGWNFTFLGNHDQPRFLSRFGDDRASAKL  306

Query  260  VISFMFFSDGIPIVYAGQEQHYSGGADP  287
            +  F+    G P +Y G+E   +GG DP
Sbjct  307  LAVFLLTLRGTPYIYQGEEIGMTGGNDP  334


>CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF1966).  This 
domain is found in various fungal alpha-amylase proteins. 
Its exact function has not, as yet, been defined.
Length=90

 Score = 150 bits (382),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 65/91 (71%), Positives = 76/91 (84%), Gaps = 1/91 (1%)

Query  332  PFYYDSNTLAMRKGSVAGSQVITVLSNKGSSGSSYTLSLSGTGYSAGATLVEMYTCTTLT  391
            P Y DS+TLAMRKG   GSQV+TVLSN+GSSG SYTLSL GTGY+AG ++VE+ +CTT+T
Sbjct  1    PIYSDSSTLAMRKGP-EGSQVVTVLSNQGSSGGSYTLSLPGTGYNAGTSVVEVLSCTTVT  59

Query  392  VDSSGNLAVPMVSGLPRVFVPSSWVSGSGLC  422
            VDSSGNL VPM SG PRV  P+S +SGSGLC
Sbjct  60   VDSSGNLTVPMDSGEPRVLFPASLLSGSGLC  90


>CDD:425821 pfam00686, CBM_20, Starch binding domain.  
Length=95

 Score = 144 bits (366),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 68/96 (71%), Gaps = 1/96 (1%)

Query  452  IPILFEELVTTTYGESIYLTGSISQLGNWDTSSAIALSASKYTSSNPEWYVTVTLPVGTS  511
            + + F    TT YG+S+Y+ GSI +LGNW+   AIALSAS+Y SS P W  TV+LP GT+
Sbjct  1    VSVTFNVNATTQYGQSVYIVGSIPELGNWNPKKAIALSASEY-SSYPLWSGTVSLPAGTT  59

Query  512  FEYKFVKKGSDGSIAWESDPNRSYTVPTGCAGTTVT  547
             EYK++K  SDGS+ WES PNRSYTVP   A TT T
Sbjct  60   IEYKYIKVDSDGSVTWESGPNRSYTVPASGASTTTT  95



Lambda      K        H        a         alpha
   0.315    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00010083

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  191     1e-56
CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF196...  151     1e-44
CDD:425821 pfam00686, CBM_20, Starch binding domain                   146     5e-43


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 191 bits (487),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 78/294 (27%), Positives = 112/294 (38%), Gaps = 43/294 (15%)

Query  34   EVNANYGTAQDLRDLANALHARGMYLMVDVVANHMGYNGAGNSVNYGVFTPFDSATYF--  91
            +++ +YGT +D ++L +  H RG+ +++D+V NH     A    +           YF  
Sbjct  43   KIDPHYGTMEDFKELISKAHERGIKVILDLVVNHTSDEHAWFQESRSSKDNPYRDYYFWR  102

Query  92   ------HPYCLITDYNNQTAVEDCWLGDT------TVSLPDLDTTSTAVRSIWYDWVKGL  139
                   P    + Y   +A      G            PDL+  +  VR+  YD V   
Sbjct  103  PGGGPIPPNNWRS-YFGGSAWTYDEKGQEYYLHLFVAGQPDLNWENPEVRNELYD-VVRF  160

Query  140  VANYSIDGLRIDTVKHVEKD----------FWPGYNDAAG--------VYCVGEVFSGDP  181
              +  IDG RID VKH+ K           FW  +  A          V  VGEVF GD 
Sbjct  161  WLDKGIDGFRIDVVKHISKVPGLPFENNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDG  220

Query  182  Q--YTCPYQNYLDG--VLNYPIYYQLLYAF---QSTSGSISNLYNMISSVASDCADP-TL  233
            +       +  ++     N+P     L  F        S   L  MI+       D    
Sbjct  221  EWARVYTTEARMELEMGFNFPHNDVALKPFIKWDLAPISARKLKEMITDWLDALPDTNGW  280

Query  234  LGNFIENHDNPRFASYTSDYS-QAKNVISFMFFSDGIPIVYAGQEQHYSGGADP  286
               F+ NHD PRF S   D    AK +  F+    G P +Y G+E   +GG DP
Sbjct  281  NFTFLGNHDQPRFLSRFGDDRASAKLLAVFLLTLRGTPYIYQGEEIGMTGGNDP  334


>CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF1966).  This 
domain is found in various fungal alpha-amylase proteins. 
Its exact function has not, as yet, been defined.
Length=90

 Score = 151 bits (383),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 65/91 (71%), Positives = 76/91 (84%), Gaps = 1/91 (1%)

Query  331  PFYYDSNTLAMRKGSVAGSQVITVLSNKGSSGSSYTLSLSGTGYSAGATLVEMYTCTTLT  390
            P Y DS+TLAMRKG   GSQV+TVLSN+GSSG SYTLSL GTGY+AG ++VE+ +CTT+T
Sbjct  1    PIYSDSSTLAMRKGP-EGSQVVTVLSNQGSSGGSYTLSLPGTGYNAGTSVVEVLSCTTVT  59

Query  391  VDSSGNLAVPMVSGLPRVFVPSSWVSGSGLC  421
            VDSSGNL VPM SG PRV  P+S +SGSGLC
Sbjct  60   VDSSGNLTVPMDSGEPRVLFPASLLSGSGLC  90


>CDD:425821 pfam00686, CBM_20, Starch binding domain.  
Length=95

 Score = 146 bits (371),  Expect = 5e-43, Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 68/96 (71%), Gaps = 1/96 (1%)

Query  451  IPILFEELVTTTYGESIYLTGSISQLGNWDTSSAIALSASKYTSSNPEWYVTVTLPVGTS  510
            + + F    TT YG+S+Y+ GSI +LGNW+   AIALSAS+Y SS P W  TV+LP GT+
Sbjct  1    VSVTFNVNATTQYGQSVYIVGSIPELGNWNPKKAIALSASEY-SSYPLWSGTVSLPAGTT  59

Query  511  FEYKFVKKGSDGSIAWESDPNRSYTVPTGCAGTTVT  546
             EYK++K  SDGS+ WES PNRSYTVP   A TT T
Sbjct  60   IEYKYIKVDSDGSVTWESGPNRSYTVPASGASTTTT  95



Lambda      K        H        a         alpha
   0.315    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 687436880


Query= TCONS_00016958

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF196...  148     1e-44
CDD:425821 pfam00686, CBM_20, Starch binding domain                   144     4e-43
CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  121     1e-31


>CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF1966).  This 
domain is found in various fungal alpha-amylase proteins. 
Its exact function has not, as yet, been defined.
Length=90

 Score = 148 bits (375),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 65/91 (71%), Positives = 76/91 (84%), Gaps = 1/91 (1%)

Query  193  PFYYDSNTLAMRKGSVAGSQVITVLSNKGSSGSSYTLSLSGTGYSAGATLVEMYTCTTLT  252
            P Y DS+TLAMRKG   GSQV+TVLSN+GSSG SYTLSL GTGY+AG ++VE+ +CTT+T
Sbjct  1    PIYSDSSTLAMRKGP-EGSQVVTVLSNQGSSGGSYTLSLPGTGYNAGTSVVEVLSCTTVT  59

Query  253  VDSSGNLAVPMVSGLPRVFVPSSWVSGSGLC  283
            VDSSGNL VPM SG PRV  P+S +SGSGLC
Sbjct  60   VDSSGNLTVPMDSGEPRVLFPASLLSGSGLC  90


>CDD:425821 pfam00686, CBM_20, Starch binding domain.  
Length=95

 Score = 144 bits (365),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 68/96 (71%), Gaps = 1/96 (1%)

Query  313  IPILFEELVTTTYGESIYLTGSISQLGNWDTSSAIALSASKYTSSNPEWYVTVTLPVGTS  372
            + + F    TT YG+S+Y+ GSI +LGNW+   AIALSAS+Y SS P W  TV+LP GT+
Sbjct  1    VSVTFNVNATTQYGQSVYIVGSIPELGNWNPKKAIALSASEY-SSYPLWSGTVSLPAGTT  59

Query  373  FEYKFVKKGSDGSIAWESDPNRSYTVPTGCAGTTVT  408
             EYK++K  SDGS+ WES PNRSYTVP   A TT T
Sbjct  60   IEYKYIKVDSDGSVTWESGPNRSYTVPASGASTTTT  95


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 121 bits (305),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 50/169 (30%), Positives = 65/169 (38%), Gaps = 27/169 (16%)

Query  7    VDGLRIDTVKHVEKD----------FWPGYNDAAG--------VYCVGEVFSGDPQ--YT  46
            +DG RID VKH+ K           FW  +  A          V  VGEVF GD +    
Sbjct  166  IDGFRIDVVKHISKVPGLPFENNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDGEWARV  225

Query  47   CPYQNYLDG--VLNYPIYYQLLYAF---QSTSGSISNLYNMISSVASDCADP-TLLGNFI  100
               +  ++     N+P     L  F        S   L  MI+       D       F+
Sbjct  226  YTTEARMELEMGFNFPHNDVALKPFIKWDLAPISARKLKEMITDWLDALPDTNGWNFTFL  285

Query  101  ENHDNPRFASYTSDYS-QAKNVISFMFFSDGIPIVYAGQEQHYSGGADP  148
             NHD PRF S   D    AK +  F+    G P +Y G+E   +GG DP
Sbjct  286  GNHDQPRFLSRFGDDRASAKLLAVFLLTLRGTPYIYQGEEIGMTGGNDP  334



Lambda      K        H        a         alpha
   0.313    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0772    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00016959

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  150     6e-45


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 150 bits (380),  Expect = 6e-45, Method: Composition-based stats.
 Identities = 59/239 (25%), Positives = 95/239 (40%), Gaps = 45/239 (19%)

Query  1    MGFTAIWITPVTEQFYENTGDGTSYHGYWQQNIHEVNANYGTAQDLRDLANALHARGMYL  60
            +G TAIW++P+ +          + HGY   + ++++ +YGT +D ++L +  H RG+ +
Sbjct  16   LGVTAIWLSPIFDS-------PQADHGYDIADYYKIDPHYGTMEDFKELISKAHERGIKV  68

Query  61   MVDVVANHMGYNGAGNSVNYGVFTPFDSATYF--------HPYCLITDYNNQTAVEDCWL  112
            ++D+V NH     A    +           YF         P    + Y   +A      
Sbjct  69   ILDLVVNHTSDEHAWFQESRSSKDNPYRDYYFWRPGGGPIPPNNWRS-YFGGSAWTYDEK  127

Query  113  GDT------TVSLPDLDTTSTAVRSIWYDWVKGLVANYSIDGLRIDTVKHVEKD------  160
            G            PDL+  +  VR+  YD V     +  IDG RID VKH+ K       
Sbjct  128  GQEYYLHLFVAGQPDLNWENPEVRNELYD-VVRFWLDKGIDGFRIDVVKHISKVPGLPFE  186

Query  161  ----FWPGYNDAAG--------VYCVGEVFSGDPQ--YTCPYQNYLDG--VLNYPMYAL  203
                FW  +  A          V  VGEVF GD +       +  ++     N+P   +
Sbjct  187  NNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDGEWARVYTTEARMELEMGFNFPHNDV  245



Lambda      K        H        a         alpha
   0.320    0.137    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00016960

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  253     2e-79
CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF196...  152     5e-45
CDD:425821 pfam00686, CBM_20, Starch binding domain                   146     1e-42


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 253 bits (647),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 95/343 (28%), Positives = 139/343 (41%), Gaps = 50/343 (15%)

Query  63   GSWQGIINHLDYIQGMGFTAIWITPVTEQFYENTGDGTSYHGYWQQNMHEVNANYGTAQD  122
            G  QGII  LDY++ +G TAIW++P+ +          + HGY   + ++++ +YGT +D
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLSPIFDS-------PQADHGYDIADYYKIDPHYGTMED  53

Query  123  LRDLANALHARGMYLMVDVVANHMGYNGAGNSVNYGVFTPFDSATYF--------HPYCL  174
             ++L +  H RG+ +++D+V NH     A    +           YF         P   
Sbjct  54   FKELISKAHERGIKVILDLVVNHTSDEHAWFQESRSSKDNPYRDYYFWRPGGGPIPPNNW  113

Query  175  ITDYNNQTAVEDCWLGDT------TVSLPDLDTTSTAVRSIWYDWVKGLVANYSIDGLRI  228
             + Y   +A      G            PDL+  +  VR+  YD V     +  IDG RI
Sbjct  114  RS-YFGGSAWTYDEKGQEYYLHLFVAGQPDLNWENPEVRNELYD-VVRFWLDKGIDGFRI  171

Query  229  DTVKHVEKD----------FWPGYNDAAG--------VYCVGEVFSGDPQ--YTCPYQNY  268
            D VKH+ K           FW  +  A          V  VGEVF GD +       +  
Sbjct  172  DVVKHISKVPGLPFENNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDGEWARVYTTEAR  231

Query  269  LDG--VLNYPIYYQLLYAF---QSTSGSISNLYNMISSVASDCADP-TLLGNFIENHDNP  322
            ++     N+P     L  F        S   L  MI+       D       F+ NHD P
Sbjct  232  MELEMGFNFPHNDVALKPFIKWDLAPISARKLKEMITDWLDALPDTNGWNFTFLGNHDQP  291

Query  323  RFASYTSDYS-QAKNVISFMFFSDGIPIVYAGQEQHYSGGADP  364
            RF S   D    AK +  F+    G P +Y G+E   +GG DP
Sbjct  292  RFLSRFGDDRASAKLLAVFLLTLRGTPYIYQGEEIGMTGGNDP  334


>CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF1966).  This 
domain is found in various fungal alpha-amylase proteins. 
Its exact function has not, as yet, been defined.
Length=90

 Score = 152 bits (387),  Expect = 5e-45, Method: Composition-based stats.
 Identities = 65/91 (71%), Positives = 76/91 (84%), Gaps = 1/91 (1%)

Query  409  PFYYDSNTLAMRKGSVAGSQVITVLSNKGSSGSSYTLSLSGTGYSAGATLVEMYTCTTLT  468
            P Y DS+TLAMRKG   GSQV+TVLSN+GSSG SYTLSL GTGY+AG ++VE+ +CTT+T
Sbjct  1    PIYSDSSTLAMRKGP-EGSQVVTVLSNQGSSGGSYTLSLPGTGYNAGTSVVEVLSCTTVT  59

Query  469  VDSSGNLAVPMVSGLPRVFVPSSWVSGSGLC  499
            VDSSGNL VPM SG PRV  P+S +SGSGLC
Sbjct  60   VDSSGNLTVPMDSGEPRVLFPASLLSGSGLC  90


>CDD:425821 pfam00686, CBM_20, Starch binding domain.  
Length=95

 Score = 146 bits (371),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 68/96 (71%), Gaps = 1/96 (1%)

Query  529  IPILFEELVTTTYGESIYLTGSISQLGNWDTSSAIALSASKYTSSNPEWYVTVTLPVGTS  588
            + + F    TT YG+S+Y+ GSI +LGNW+   AIALSAS+Y SS P W  TV+LP GT+
Sbjct  1    VSVTFNVNATTQYGQSVYIVGSIPELGNWNPKKAIALSASEY-SSYPLWSGTVSLPAGTT  59

Query  589  FEYKFVKKGSDGSIAWESDPNRSYTVPTGCAGTTVT  624
             EYK++K  SDGS+ WES PNRSYTVP   A TT T
Sbjct  60   IEYKYIKVDSDGSVTWESGPNRSYTVPASGASTTTT  95



Lambda      K        H        a         alpha
   0.316    0.130    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00010084

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  224     2e-69
CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF196...  150     1e-44
CDD:425821 pfam00686, CBM_20, Starch binding domain                   144     3e-42


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 224 bits (574),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 87/328 (27%), Positives = 129/328 (39%), Gaps = 50/328 (15%)

Query  1    MGFTAIWITPVTEQFYENTGDGTSYHGYWQQNIHEVNANYGTAQDLRDLANALHARGMYL  60
            +G TAIW++P+ +          + HGY   + ++++ +YGT +D ++L +  H RG+ +
Sbjct  16   LGVTAIWLSPIFDS-------PQADHGYDIADYYKIDPHYGTMEDFKELISKAHERGIKV  68

Query  61   MVDVVANHMGYNGAGNSVNYGVFTPFDSATYF--------HPYCLITDYNNQTAVEDCWL  112
            ++D+V NH     A    +           YF         P    + Y   +A      
Sbjct  69   ILDLVVNHTSDEHAWFQESRSSKDNPYRDYYFWRPGGGPIPPNNWRS-YFGGSAWTYDEK  127

Query  113  GDT------TVSLPDLDTTSTAVRSIWYDWVKGLVANYSIDGLRIDTVKHVEKD------  160
            G            PDL+  +  VR+  YD V     +  IDG RID VKH+ K       
Sbjct  128  GQEYYLHLFVAGQPDLNWENPEVRNELYD-VVRFWLDKGIDGFRIDVVKHISKVPGLPFE  186

Query  161  ----FWPGYNDAAG--------VYCVGEVFSGDPQ--YTCPYQNYLDG--VLNYPIYYQL  204
                FW  +  A          V  VGEVF GD +       +  ++     N+P     
Sbjct  187  NNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDGEWARVYTTEARMELEMGFNFPHNDVA  246

Query  205  LYAF---QSTSGSISNLYNMISSVASDCADP-TLLGNFIENHDNPRFASYTSDYS-QAKN  259
            L  F        S   L  MI+       D       F+ NHD PRF S   D    AK 
Sbjct  247  LKPFIKWDLAPISARKLKEMITDWLDALPDTNGWNFTFLGNHDQPRFLSRFGDDRASAKL  306

Query  260  VISFMFFSDGIPIVYAGQEQHYSGGADP  287
            +  F+    G P +Y G+E   +GG DP
Sbjct  307  LAVFLLTLRGTPYIYQGEEIGMTGGNDP  334


>CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF1966).  This 
domain is found in various fungal alpha-amylase proteins. 
Its exact function has not, as yet, been defined.
Length=90

 Score = 150 bits (382),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 65/91 (71%), Positives = 76/91 (84%), Gaps = 1/91 (1%)

Query  332  PFYYDSNTLAMRKGSVAGSQVITVLSNKGSSGSSYTLSLSGTGYSAGATLVEMYTCTTLT  391
            P Y DS+TLAMRKG   GSQV+TVLSN+GSSG SYTLSL GTGY+AG ++VE+ +CTT+T
Sbjct  1    PIYSDSSTLAMRKGP-EGSQVVTVLSNQGSSGGSYTLSLPGTGYNAGTSVVEVLSCTTVT  59

Query  392  VDSSGNLAVPMVSGLPRVFVPSSWVSGSGLC  422
            VDSSGNL VPM SG PRV  P+S +SGSGLC
Sbjct  60   VDSSGNLTVPMDSGEPRVLFPASLLSGSGLC  90


>CDD:425821 pfam00686, CBM_20, Starch binding domain.  
Length=95

 Score = 144 bits (366),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 68/96 (71%), Gaps = 1/96 (1%)

Query  452  IPILFEELVTTTYGESIYLTGSISQLGNWDTSSAIALSASKYTSSNPEWYVTVTLPVGTS  511
            + + F    TT YG+S+Y+ GSI +LGNW+   AIALSAS+Y SS P W  TV+LP GT+
Sbjct  1    VSVTFNVNATTQYGQSVYIVGSIPELGNWNPKKAIALSASEY-SSYPLWSGTVSLPAGTT  59

Query  512  FEYKFVKKGSDGSIAWESDPNRSYTVPTGCAGTTVT  547
             EYK++K  SDGS+ WES PNRSYTVP   A TT T
Sbjct  60   IEYKYIKVDSDGSVTWESGPNRSYTVPASGASTTTT  95



Lambda      K        H        a         alpha
   0.315    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00010081

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  254     6e-80
CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF196...  153     5e-45
CDD:425821 pfam00686, CBM_20, Starch binding domain                   146     2e-42


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 254 bits (651),  Expect = 6e-80, Method: Composition-based stats.
 Identities = 95/343 (28%), Positives = 139/343 (41%), Gaps = 50/343 (15%)

Query  63   GSWQGIINHLDYIQGMGFTAIWITPVTEQFYENTGDGTSYHGYWQQNIHEVNANYGTAQD  122
            G  QGII  LDY++ +G TAIW++P+ +          + HGY   + ++++ +YGT +D
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLSPIFDS-------PQADHGYDIADYYKIDPHYGTMED  53

Query  123  LRDLANALHARGMYLMVDVVANHMGYNGAGNSVNYGVFTPFDSATYF--------HPYCL  174
             ++L +  H RG+ +++D+V NH     A    +           YF         P   
Sbjct  54   FKELISKAHERGIKVILDLVVNHTSDEHAWFQESRSSKDNPYRDYYFWRPGGGPIPPNNW  113

Query  175  ITDYNNQTAVEDCWLGDT------TVSLPDLDTTSTAVRSIWYDWVKGLVANYSIDGLRI  228
             + Y   +A      G            PDL+  +  VR+  YD V     +  IDG RI
Sbjct  114  RS-YFGGSAWTYDEKGQEYYLHLFVAGQPDLNWENPEVRNELYD-VVRFWLDKGIDGFRI  171

Query  229  DTVKHVEKD----------FWPGYNDAAG--------VYCVGEVFSGDPQ--YTCPYQNY  268
            D VKH+ K           FW  +  A          V  VGEVF GD +       +  
Sbjct  172  DVVKHISKVPGLPFENNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDGEWARVYTTEAR  231

Query  269  LDG--VLNYPIYYQLLYAF---QSTSGSISNLYNMISSVASDCADP-TLLGNFIENHDNP  322
            ++     N+P     L  F        S   L  MI+       D       F+ NHD P
Sbjct  232  MELEMGFNFPHNDVALKPFIKWDLAPISARKLKEMITDWLDALPDTNGWNFTFLGNHDQP  291

Query  323  RFASYTSDYS-QAKNVISFMFFSDGIPIVYAGQEQHYSGGADP  364
            RF S   D    AK +  F+    G P +Y G+E   +GG DP
Sbjct  292  RFLSRFGDDRASAKLLAVFLLTLRGTPYIYQGEEIGMTGGNDP  334


>CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF1966).  This 
domain is found in various fungal alpha-amylase proteins. 
Its exact function has not, as yet, been defined.
Length=90

 Score = 153 bits (388),  Expect = 5e-45, Method: Composition-based stats.
 Identities = 65/91 (71%), Positives = 76/91 (84%), Gaps = 1/91 (1%)

Query  409  PFYYDSNTLAMRKGSVAGSQVITVLSNKGSSGSSYTLSLSGTGYSAGATLVEMYTCTTLT  468
            P Y DS+TLAMRKG   GSQV+TVLSN+GSSG SYTLSL GTGY+AG ++VE+ +CTT+T
Sbjct  1    PIYSDSSTLAMRKGP-EGSQVVTVLSNQGSSGGSYTLSLPGTGYNAGTSVVEVLSCTTVT  59

Query  469  VDSSGNLAVPMVSGLPRVFVPSSWVSGSGLC  499
            VDSSGNL VPM SG PRV  P+S +SGSGLC
Sbjct  60   VDSSGNLTVPMDSGEPRVLFPASLLSGSGLC  90


>CDD:425821 pfam00686, CBM_20, Starch binding domain.  
Length=95

 Score = 146 bits (370),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 68/96 (71%), Gaps = 1/96 (1%)

Query  529  IPILFEELVTTTYGESIYLTGSISQLGNWDTSSAIALSASKYTSSNPEWYVTVTLPVGTS  588
            + + F    TT YG+S+Y+ GSI +LGNW+   AIALSAS+Y SS P W  TV+LP GT+
Sbjct  1    VSVTFNVNATTQYGQSVYIVGSIPELGNWNPKKAIALSASEY-SSYPLWSGTVSLPAGTT  59

Query  589  FEYKFVKKGSDGSIAWESDPNRSYTVPTGCAGTTVT  624
             EYK++K  SDGS+ WES PNRSYTVP   A TT T
Sbjct  60   IEYKYIKVDSDGSVTWESGPNRSYTVPASGASTTTT  95



Lambda      K        H        a         alpha
   0.316    0.130    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00016961

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00010085

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  537     0.0  


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 537 bits (1387),  Expect = 0.0, Method: Composition-based stats.
 Identities = 215/432 (50%), Positives = 285/432 (66%), Gaps = 5/432 (1%)

Query  29   SSSNETLTVENPTTGSTLGTVSAATAADVERAVTSATTGFQTWRTTPGPERGRLLLKLAD  88
             S +ET+ V NP TG  + TV AATA DV+ A+ +A   F  WR TP  ER  +L K AD
Sbjct  3    DSESETIEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRKAAD  62

Query  89   LIERDAEEFASLEAVDAGILYTDSMGMNIPQAVANLRYYAGWADKIDGKTLEI-PGGVGY  147
            L+E   +E A LE ++ G    ++ G  + +A+  LRYYAG A ++DG+TL   PG + Y
Sbjct  63   LLEERKDELAELETLENGKPLAEARG-EVDRAIDVLRYYAGLARRLDGETLPSDPGRLAY  121

Query  148  TFREPLGVCAAIVPWNAPLMITIWKLAPALATGNSLIIKTSENSPLYGQKLAQLIVEAGF  207
            T REPLGV  AI PWN PL++  WK+APALA GN++++K SE +PL    LA+L  EAG 
Sbjct  122  TRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGL  181

Query  208  PAGVVNILAGLGLPAGQSLAEHPAIRKVSFTGSSATGRKILAAAAKTNLKKVSLELGGKG  267
            PAGV+N++ G G   G++L EHP +RKVSFTGS+A GR I  AAA+ NLK+V+LELGGK 
Sbjct  182  PAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQ-NLKRVTLELGGKN  240

Query  268  PSIVFDDCDLDNALLWTRIGITANNGQICAAGSRIYVQDTIYDKFLAAYVRAAKENPGVV  327
            P IV +D DLD A+     G   N GQ+C A SR+ V ++IYD+F+   V AAK+    V
Sbjct  241  PLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKK--LKV  298

Query  328  GDPLDPATTKGPIVNGAQHRRILGYIAQGKETGARLLFGGEKVGETGYFVENTAFADVAE  387
            GDPLDP T  GP+++ AQ  R+L Y+   KE GA+LL GGE   + GYFVE T  A+V  
Sbjct  299  GDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLDNGYFVEPTVLANVTP  358

Query  388  DAAIMKEEIFGPVASIAKFSTEEEVIRKANDTLHGLSAAIFTTNVNRAHRVSRALESGQV  447
            D  I +EEIFGPV S+ +F  EEE I  ANDT +GL+A +FT+++ RA RV+R LE+G V
Sbjct  359  DMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMV  418

Query  448  TVNAWAMLSANA  459
             +N +    A+ 
Sbjct  419  WINDYTTGDADG  430



Lambda      K        H        a         alpha
   0.316    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00010086

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  581     0.0  


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 581 bits (1501),  Expect = 0.0, Method: Composition-based stats.
 Identities = 233/461 (51%), Positives = 305/461 (66%), Gaps = 6/461 (1%)

Query  29   SSSNETLTVENPTTGSTLGTVSAATAADVERAVTSATTGFQTWRTTPGPERGRLLLKLAD  88
             S +ET+ V NP TG  + TV AATA DV+ A+ +A   F  WR TP  ER  +L K AD
Sbjct  3    DSESETIEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRKAAD  62

Query  89   LIERDAEEFASLEAVDAGILYTDSMGMNIPQAVANLRYYAGWADKIDGKTLEI-PGGVGY  147
            L+E   +E A LE ++ G    ++ G  + +A+  LRYYAG A ++DG+TL   PG + Y
Sbjct  63   LLEERKDELAELETLENGKPLAEARG-EVDRAIDVLRYYAGLARRLDGETLPSDPGRLAY  121

Query  148  TFREPLGVCAAIVPWNAPLMITIWKLAPALATGNSLIIKTSENSPLYGQKLAQLIVEAGF  207
            T REPLGV  AI PWN PL++  WK+APALA GN++++K SE +PL    LA+L  EAG 
Sbjct  122  TRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGL  181

Query  208  PAGVVNILAGLGLPAGQSLAEHPAIRKVSFTGSSATGRKILAAAAKTNLKKVSLELGGKG  267
            PAGV+N++ G G   G++L EHP +RKVSFTGS+A GR I  AAA+ NLK+V+LELGGK 
Sbjct  182  PAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQ-NLKRVTLELGGKN  240

Query  268  PSIVFDDCDLDNALLWTRIGITANNGQICAAGSRIYVQDTIYDKFLAAYVRAAKENPGVV  327
            P IV +D DLD A+     G   N GQ+C A SR+ V ++IYD+F+   V AAK+    V
Sbjct  241  PLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKK--LKV  298

Query  328  GDPLDPATTKGPIVNGAQHRRILGYIAQGKETGARLLFGGEKVGETGYFVENTAFADVAE  387
            GDPLDP T  GP+++ AQ  R+L Y+   KE GA+LL GGE   + GYFVE T  A+V  
Sbjct  299  GDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLDNGYFVEPTVLANVTP  358

Query  388  DAAIMKEEIFGPVASIAKFSTEEEVIRKANDTLHGLSAAIFTTNVNRAHRVSRALESGQV  447
            D  I +EEIFGPV S+ +F  EEE I  ANDT +GL+A +FT+++ RA RV+R LE+G V
Sbjct  359  DMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMV  418

Query  448  TVNAWAMLSA-NAPFGGVKESGFGRDMGEEALEGWTSVKTV  487
             +N +    A   PFGG K+SGFGR+ G   LE +T VKTV
Sbjct  419  WINDYTTGDADGLPFGGFKQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.316    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00010087

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  381     7e-132


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 381 bits (982),  Expect = 7e-132, Method: Composition-based stats.
 Identities = 152/298 (51%), Positives = 201/298 (67%), Gaps = 4/298 (1%)

Query  32   PRMITIWKLAPALATGNSLIIKTSENSPLYGQKLAQLIVEAGFPAGVVNILAGLGLPAGQ  91
            P ++  WK+APALA GN++++K SE +PL    LA+L  EAG PAGV+N++ G G   G+
Sbjct  139  PLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGAEVGE  198

Query  92   SLAEHPAIRKVSFTGSSATGRKILAAAAKTNLKKVSLELGGKGPSIVFDDCDLDNALLWT  151
            +L EHP +RKVSFTGS+A GR I  AAA+ NLK+V+LELGGK P IV +D DLD A+   
Sbjct  199  ALVEHPDVRKVSFTGSTAVGRHIAEAAAQ-NLKRVTLELGGKNPLIVLEDADLDAAVEAA  257

Query  152  RIGITANNGQICAAGSRIYVQDTIYDKFLAAYVRAAKENPGVVGDPLDPATTKGPIVNGA  211
              G   N GQ+C A SR+ V ++IYD+F+   V AAK+    VGDPLDP T  GP+++ A
Sbjct  258  VFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKK--LKVGDPLDPDTDMGPLISKA  315

Query  212  QHRRILGYIAQGKETGARLLFGGEKVGETGYFVENTAFADVAEDAAIMKEEIFGPVASIA  271
            Q  R+L Y+   KE GA+LL GGE   + GYFVE T  A+V  D  I +EEIFGPV S+ 
Sbjct  316  QLERVLKYVEDAKEEGAKLLTGGEAGLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVI  375

Query  272  KFSTEEEVIRKANDTLHGLSAAIFTTNVNRAHRVSRALESGQVTVNAWAMLSA-NAPF  328
            +F  EEE I  ANDT +GL+A +FT+++ RA RV+R LE+G V +N +    A   PF
Sbjct  376  RFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPF  433



Lambda      K        H        a         alpha
   0.317    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00016962

Length=166
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  166     2e-50


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 166 bits (422),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 66/139 (47%), Positives = 86/139 (62%), Gaps = 2/139 (1%)

Query  29   SSSNETLTVENPTTGSTLGTVSAATAADVERAVTSATTGFQTWRTTPGPERGRLLLKLAD  88
             S +ET+ V NP TG  + TV AATA DV+ A+ +A   F  WR TP  ER  +L K AD
Sbjct  3    DSESETIEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRKAAD  62

Query  89   LIERDAEEFASLEAVDAGILYTDSMGMNIPQAVANLRYYAGWADKIDGKTLEI-PGGVGY  147
            L+E   +E A LE ++ G    ++ G  + +A+  LRYYAG A ++DG+TL   PG + Y
Sbjct  63   LLEERKDELAELETLENGKPLAEARG-EVDRAIDVLRYYAGLARRLDGETLPSDPGRLAY  121

Query  148  TFREPLGVCAAIVPWNAPL  166
            T REPLGV  AI PWN PL
Sbjct  122  TRREPLGVVGAITPWNFPL  140



Lambda      K        H        a         alpha
   0.315    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00016963

Length=166
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  166     2e-50


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 166 bits (422),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 66/139 (47%), Positives = 86/139 (62%), Gaps = 2/139 (1%)

Query  29   SSSNETLTVENPTTGSTLGTVSAATAADVERAVTSATTGFQTWRTTPGPERGRLLLKLAD  88
             S +ET+ V NP TG  + TV AATA DV+ A+ +A   F  WR TP  ER  +L K AD
Sbjct  3    DSESETIEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRKAAD  62

Query  89   LIERDAEEFASLEAVDAGILYTDSMGMNIPQAVANLRYYAGWADKIDGKTLEI-PGGVGY  147
            L+E   +E A LE ++ G    ++ G  + +A+  LRYYAG A ++DG+TL   PG + Y
Sbjct  63   LLEERKDELAELETLENGKPLAEARG-EVDRAIDVLRYYAGLARRLDGETLPSDPGRLAY  121

Query  148  TFREPLGVCAAIVPWNAPL  166
            T REPLGV  AI PWN PL
Sbjct  122  TRREPLGVVGAITPWNFPL  140



Lambda      K        H        a         alpha
   0.315    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00010088

Length=167
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  166     1e-50


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 166 bits (422),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 66/139 (47%), Positives = 86/139 (62%), Gaps = 2/139 (1%)

Query  29   SSSNETLTVENPTTGSTLGTVSAATAADVERAVTSATTGFQTWRTTPGPERGRLLLKLAD  88
             S +ET+ V NP TG  + TV AATA DV+ A+ +A   F  WR TP  ER  +L K AD
Sbjct  3    DSESETIEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRKAAD  62

Query  89   LIERDAEEFASLEAVDAGILYTDSMGMNIPQAVANLRYYAGWADKIDGKTLEI-PGGVGY  147
            L+E   +E A LE ++ G    ++ G  + +A+  LRYYAG A ++DG+TL   PG + Y
Sbjct  63   LLEERKDELAELETLENGKPLAEARG-EVDRAIDVLRYYAGLARRLDGETLPSDPGRLAY  121

Query  148  TFREPLGVCAAIVPWNAPL  166
            T REPLGV  AI PWN PL
Sbjct  122  TRREPLGVVGAITPWNFPL  140



Lambda      K        H        a         alpha
   0.314    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00010089

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  465     2e-163


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 465 bits (1199),  Expect = 2e-163, Method: Composition-based stats.
 Identities = 189/375 (50%), Positives = 246/375 (66%), Gaps = 5/375 (1%)

Query  29   SSSNETLTVENPTTGSTLGTVSAATAADVERAVTSATTGFQTWRTTPGPERGRLLLKLAD  88
             S +ET+ V NP TG  + TV AATA DV+ A+ +A   F  WR TP  ER  +L K AD
Sbjct  3    DSESETIEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRKAAD  62

Query  89   LIERDAEEFASLEAVDAGILYTDSMGMNIPQAVANLRYYAGWADKIDGKTLEI-PGGVGY  147
            L+E   +E A LE ++ G    ++ G  + +A+  LRYYAG A ++DG+TL   PG + Y
Sbjct  63   LLEERKDELAELETLENGKPLAEARG-EVDRAIDVLRYYAGLARRLDGETLPSDPGRLAY  121

Query  148  TFREPLGVCAAIVPWNAPLMITIWKLAPALATGNSLIIKTSENSPLYGQKLAQLIVEAGF  207
            T REPLGV  AI PWN PL++  WK+APALA GN++++K SE +PL    LA+L  EAG 
Sbjct  122  TRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGL  181

Query  208  PAGVVNILAGLGLPAGQSLAEHPAIRKVSFTGSSATGRKILAAAAKTNLKKVSLELGGKG  267
            PAGV+N++ G G   G++L EHP +RKVSFTGS+A GR I  AAA+ NLK+V+LELGGK 
Sbjct  182  PAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQ-NLKRVTLELGGKN  240

Query  268  PSIVFDDCDLDNALLWTRIGITANNGQICAAGSRIYVQDTIYDKFLAAYVRAAKENPGVV  327
            P IV +D DLD A+     G   N GQ+C A SR+ V ++IYD+F+   V AAK+    V
Sbjct  241  PLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKK--LKV  298

Query  328  GDPLDPATTKGPIVNGAQHRRILGYIAQGKETGARLLFGGEKVGETGYFVENTAFADVAE  387
            GDPLDP T  GP+++ AQ  R+L Y+   KE GA+LL GGE   + GYFVE T  A+V  
Sbjct  299  GDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLDNGYFVEPTVLANVTP  358

Query  388  DAAIMKEEIFGPVAV  402
            D  I +EEIFGPV  
Sbjct  359  DMRIAQEEIFGPVLS  373



Lambda      K        H        a         alpha
   0.316    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00010090

Length=337


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00010091

Length=128
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:434023 pfam14534, DUF4440, Domain of unknown function (DUF4440)   55.5    9e-12


>CDD:434023 pfam14534, DUF4440, Domain of unknown function (DUF4440).  
Length=107

 Score = 55.5 bits (134),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 28/109 (26%), Positives = 49/109 (45%), Gaps = 10/109 (9%)

Query  16   ERALWTALTSADPGPAIEKLSHQEVNMIFPQTPILTLEGENKIQDAVKPPFHRFDTYSLD  75
            E AL  AL + DP  A+  L   +  ++ P  P+L  +    I +A+      + +  L+
Sbjct  5    EEALLEALVAGDP-AALAALLAPDFVLVGPSGPVLDKDE---ILEALASGGLDYSSIELE  60

Query  76   EVRVIIIDLMAGTVTYRVTATR----GNKTYRANGSTTWQQASDGEWRI  120
            + +V ++   A  V  RVT T        T R   ++ W++   G W+I
Sbjct  61   DEKVRVLGDTA-VVRGRVTVTGRGDGEPVTVRGRFTSVWKK-EGGGWKI  107



Lambda      K        H        a         alpha
   0.319    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016964

Length=128
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:434023 pfam14534, DUF4440, Domain of unknown function (DUF4440)   55.5    9e-12


>CDD:434023 pfam14534, DUF4440, Domain of unknown function (DUF4440).  
Length=107

 Score = 55.5 bits (134),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 28/109 (26%), Positives = 49/109 (45%), Gaps = 10/109 (9%)

Query  16   ERALWTALTSADPGPAIEKLSHQEVNMIFPQTPILTLEGENKIQDAVKPPFHRFDTYSLD  75
            E AL  AL + DP  A+  L   +  ++ P  P+L  +    I +A+      + +  L+
Sbjct  5    EEALLEALVAGDP-AALAALLAPDFVLVGPSGPVLDKDE---ILEALASGGLDYSSIELE  60

Query  76   EVRVIIIDLMAGTVTYRVTATR----GNKTYRANGSTTWQQASDGEWRI  120
            + +V ++   A  V  RVT T        T R   ++ W++   G W+I
Sbjct  61   DEKVRVLGDTA-VVRGRVTVTGRGDGEPVTVRGRFTSVWKK-EGGGWKI  107



Lambda      K        H        a         alpha
   0.319    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016965

Length=128
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:434023 pfam14534, DUF4440, Domain of unknown function (DUF4440)   55.5    9e-12


>CDD:434023 pfam14534, DUF4440, Domain of unknown function (DUF4440).  
Length=107

 Score = 55.5 bits (134),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 28/109 (26%), Positives = 49/109 (45%), Gaps = 10/109 (9%)

Query  16   ERALWTALTSADPGPAIEKLSHQEVNMIFPQTPILTLEGENKIQDAVKPPFHRFDTYSLD  75
            E AL  AL + DP  A+  L   +  ++ P  P+L  +    I +A+      + +  L+
Sbjct  5    EEALLEALVAGDP-AALAALLAPDFVLVGPSGPVLDKDE---ILEALASGGLDYSSIELE  60

Query  76   EVRVIIIDLMAGTVTYRVTATR----GNKTYRANGSTTWQQASDGEWRI  120
            + +V ++   A  V  RVT T        T R   ++ W++   G W+I
Sbjct  61   DEKVRVLGDTA-VVRGRVTVTGRGDGEPVTVRGRFTSVWKK-EGGGWKI  107



Lambda      K        H        a         alpha
   0.319    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00010092

Length=128
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:434023 pfam14534, DUF4440, Domain of unknown function (DUF4440)   55.5    9e-12


>CDD:434023 pfam14534, DUF4440, Domain of unknown function (DUF4440).  
Length=107

 Score = 55.5 bits (134),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 28/109 (26%), Positives = 49/109 (45%), Gaps = 10/109 (9%)

Query  16   ERALWTALTSADPGPAIEKLSHQEVNMIFPQTPILTLEGENKIQDAVKPPFHRFDTYSLD  75
            E AL  AL + DP  A+  L   +  ++ P  P+L  +    I +A+      + +  L+
Sbjct  5    EEALLEALVAGDP-AALAALLAPDFVLVGPSGPVLDKDE---ILEALASGGLDYSSIELE  60

Query  76   EVRVIIIDLMAGTVTYRVTATR----GNKTYRANGSTTWQQASDGEWRI  120
            + +V ++   A  V  RVT T        T R   ++ W++   G W+I
Sbjct  61   DEKVRVLGDTA-VVRGRVTVTGRGDGEPVTVRGRFTSVWKK-EGGGWKI  107



Lambda      K        H        a         alpha
   0.319    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016966

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00010093

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00010094

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00016967

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00010095

Length=103
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428985 pfam06516, NUP, Purine nucleoside permease (NUP). This...  105     2e-29


>CDD:428985 pfam06516, NUP, Purine nucleoside permease (NUP).  This family 
consists of several purine nucleoside permease from both bacteria 
and fungi.
Length=304

 Score = 105 bits (264),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 44/59 (75%), Gaps = 1/59 (2%)

Query  1    MRTASDFDRPYPGQSAIENLLYADQGAFGPAIQNIYLAGIKVVQGIMDGWNKTFTAGVK  59
            +RT S+FDRP PG +A E+LL ADQG F PA++N+YLAG  VVQGI+  W  T+ AGV 
Sbjct  247  LRTGSNFDRPPPGVTAAESLLAADQGGFEPALENLYLAGSPVVQGILANW-DTYKAGVP  304



Lambda      K        H        a         alpha
   0.319    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00010096

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428985 pfam06516, NUP, Purine nucleoside permease (NUP). This...  535     0.0  


>CDD:428985 pfam06516, NUP, Purine nucleoside permease (NUP).  This family 
consists of several purine nucleoside permease from both bacteria 
and fungi.
Length=304

 Score = 535 bits (1380),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/314 (59%), Positives = 231/314 (74%), Gaps = 11/314 (4%)

Query  47   MFKPEAAVWW-NIPEFDLLAHNVTVPGASPVYPDVYCTADYSICQLITGEGEINAAVTVS  105
            MF+ EA  W+  +P    LAHN+TVPG SP+YPDV+C AD S+CQL TGEGEINAA ++ 
Sbjct  1    MFEGEAQAWYERLP----LAHNITVPGLSPLYPDVHCNADGSVCQLTTGEGEINAAASIM  56

Query  106  SIAFSPLFDLTHTYFLIAGIAGINPKVATIGSVTFARYAVQVALQYEIDIRDLGPNYTSP  165
            ++  SP FDL+HTYFLIAGIAG+NP+ ATIGSV +ARYAVQV LQYEID R++  ++ + 
Sbjct  57   ALGLSPRFDLSHTYFLIAGIAGVNPEDATIGSVAWARYAVQVDLQYEIDAREIPADWPTG  116

Query  166  YIPQGAYAPDQYPGSIYGTEVFEVNAELRSLAASFARAAQLADSDTAKAYRAKYVTNNGT  225
            Y P G   PD+YPG+IYGTEVFE+N  LR  A   A+ A L D+  A AYRA Y      
Sbjct  117  YFPYGTKRPDEYPGNIYGTEVFELNPALRDWAYELAKKATLPDTPAAAAYRALY-----G  171

Query  226  YAAGTQTPSVVECDVSTSDVYFSGTILDDVFDNTIRVLTNGTGVYCSTAQEDNATLEALL  285
            Y A  + PSVV+CD +TSD Y+ GT+L++  +N  ++ TNGTG YC+TAQEDNATLEALL
Sbjct  172  YPAAQRPPSVVKCDTATSDTYWHGTLLNEAAENWTKLWTNGTGTYCTTAQEDNATLEALL  231

Query  286  RAASHNRVDFSRIIIMRTASDFDRPYPGQSAIENLLYADQGAFGPAIQNIYLAGIKVVQG  345
            RAA    VDFSRII++RT S+FDRP PG +A E+LL ADQG F PA++N+YLAG  VVQG
Sbjct  232  RAAKAGLVDFSRIIVLRTGSNFDRPPPGVTAAESLLAADQGGFEPALENLYLAGSPVVQG  291

Query  346  IMDGWNKTFTAGVK  359
            I+  W  T+ AGV 
Sbjct  292  ILANW-DTYKAGVP  304



Lambda      K        H        a         alpha
   0.319    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00010097

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  123     9e-35
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  103     8e-27


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 123 bits (311),  Expect = 9e-35, Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 93/212 (44%), Gaps = 21/212 (10%)

Query  9    KSALITGAASGIGFAIARVCRTKGMHLALLDVDTANLENARNELSALDPSLKTEIYTIDV  68
            K AL+TGA+SGIG AIA+    +G  + L+D     LE    EL AL    K      DV
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGAL--GGKALFIQGDV  58

Query  69   GNRDAWKDIAKQIRSTFHDLDLIVLNAGKSYKAQSGLAGRLKPWA--DAEYWKKTFDTNV  126
             +R   K + +Q       LD++V NAG            L P++    E W++  D N+
Sbjct  59   TDRAQVKALVEQAVERLGRLDILVNNAG---------ITGLGPFSELSDEDWERVIDVNL  109

Query  127  FGPLNGLETLLPLMTASSPTPKSIVITGSKQGITNPPGAANPAYNASKAAIKNLTEHLAH  186
             G  N    +LP M   S     IV   S  G+   P     AY+ASKAA+   T  LA 
Sbjct  110  TGVFNLTRAVLPAMIKGS--GGRIVNISSVAGLV--PYPGGSAYSASKAAVIGFTRSLAL  165

Query  187  DLRSDPATAHISVHLLIPGWTWTGLMGNVGPT  218
            +L    A   I V+ + PG   T +   +   
Sbjct  166  EL----APHGIRVNAVAPGGVDTDMTKELRED  193


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 103 bits (260),  Expect = 8e-27, Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 85/208 (41%), Gaps = 21/208 (10%)

Query  15   GAA--SGIGFAIARVCRTKGMHLALLDVDTANLENARNELSALDPSLKTEIYTIDVGNRD  72
            GAA  SGIG+AIAR    +G  + L D++ A  +        L   L   +   DV + +
Sbjct  1    GAANESGIGWAIARALAEEGAEVVLTDLNEALAKRVE----ELAEELGAAVLPCDVTDEE  56

Query  73   AWKDIAKQIRSTFHDLDLIVLNAGKSYKAQSGLAGRLKPWADAEYWKKTFDTNVFGPLNG  132
              + +       F  LD++V NAG + K +             E + +  D N++     
Sbjct  57   QVEALVAAAVEKFGRLDILVNNAGFAPKLKGPFLD-----TSREDFDRALDVNLYSLFLL  111

Query  133  LETLLPLMTASSPTPKSIVITGSKQGITNPPGAANPAYNASKAAIKNLTEHLAHDLRSDP  192
             +  LPLM        SIV   S       P     AY A+KAA++ LT +LA +L    
Sbjct  112  AKAALPLMKEGG----SIVNLSSIGAERVVPNYN--AYGAAKAALEALTRYLAVELGPR-  164

Query  193  ATAHISVHLLIPGWTWTGLMGNVGPTDE  220
                I V+ + PG   T     +   DE
Sbjct  165  ---GIRVNAISPGPIKTLAASGIPGFDE  189



Lambda      K        H        a         alpha
   0.314    0.129    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00016969

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00010098

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00010099

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            112     7e-28


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 112 bits (282),  Expect = 7e-28, Method: Composition-based stats.
 Identities = 73/336 (22%), Positives = 119/336 (35%), Gaps = 23/336 (7%)

Query  67   LAVMYLFNALDKGNLGNAETDGMSKDLNFKPNEYNLLLSIFFIPYVIFAPPGAMLGKRYS  126
            L +     AL +  LG A    +++DL   P E  LLL++F + Y +  P    L  R+ 
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  127  PARVLPILMFCFGSFTLLSASTKNFGGIFALRWFLGMCEAPFFPLVIYYLTTFYRRGELA  186
              RVL I +  F    LL     +   +  LR   G+     FP  +  +  ++   E  
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  187  RRLAIFYAASNIANAFSGLIAFGVFQIEGSSIPNWRYLFIIEGGATVLFSIFAFWYLPRS  246
            R L +  A   +  A   L+  G+     +S+  WR  F+I    ++L        LPR 
Sbjct  121  RALGLVSAGFGLGAALGPLLG-GLL----ASLFGWRAAFLILAILSLLA--AVLLLLPRP  173

Query  247  VAEAKFLSEDEKALALHRIQVDSSAIVNDKFHLRDALVIFKHPTTYVFLCIEICLGVPIQ  306
              E+K     E+A                   L  A            L   +  G    
Sbjct  174  PPESKRPKPAEEARLS----------------LIVAWKALLRDPVLWLLLALLLFGFAFF  217

Query  307  GVALFLPQIVQRLGYSTVKTNLYTVAPNVTGAVMLLVLAFSSDAVRLRSPFIVLGFLLTF  366
            G+  +LP   + LG S +   L      + GA+  L+L   SD +  R   ++   LL  
Sbjct  218  GLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLIL  277

Query  367  TGFIIYASIDDVHAQIRLAYFATFMMTWGTSAPSVL  402
                +      + +   L         +G   P++ 
Sbjct  278  AALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALN  313



Lambda      K        H        a         alpha
   0.327    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 634393654


Query= TCONS_00010100

Length=220


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00010101

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431610 pfam11017, DUF2855, Protein of unknown function (DUF28...  242     1e-79


>CDD:431610 pfam11017, DUF2855, Protein of unknown function (DUF2855).  This 
family of proteins has no known function.
Length=339

 Score = 242 bits (621),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 98/280 (35%), Positives = 143/280 (51%), Gaps = 36/280 (13%)

Query  1    MPIYNRYEQILPENE--EPDEMEWGALLRGVWIAGYLLSEYVFSPDPRARVPVHPLGAAS  58
            MPIYNRY ++  +      +E  W ALLR ++I  +LL++++F                 
Sbjct  93   MPIYNRYLRVSEDPAYRSDEEEAWQALLRPLFITSFLLNDFLFDE---------------  137

Query  59   KLPWSAGDADLSSAVVVVLAASTKTARSILWCLFNRPRESGPLGLVQVTSSPAALQKVAS  118
               WSA DADL  AVVV+L+AS+KTAR   + L  R + SGPL L+ +TS+P     VA 
Sbjct  138  ---WSAEDADLFGAVVVLLSASSKTARGFAFLLRRRRKASGPLALIGLTSAPN----VAF  190

Query  119  KKGWGDVSKSLAYTEIHQATRWIEGRQPSKVVIIDCGARDHVLSQLYKSLQVSALQPCKT  178
             +G G   K +AY ++             KVVI+D G R  +L+ L++ L     Q    
Sbjct  191  VEGLGLYDKVVAYDDLASLA------AARKVVIVDFGGRGGLLAALHEHLGD---QGRLV  241

Query  179  VIIQLGSQQKVYTTGEIQTARADMQSMGK-IQFNASGVQDTLIDRDGAATYFGKISRSWK  237
            V + +G   KVY++ E+Q A A   ++ K +QF A    D  I   GA  YF +   +W+
Sbjct  242  VSVLVGGTHKVYSSEELQEAMASAAALPKPVQFFAPDQIDKRIKEWGAEEYFQRFDAAWQ  301

Query  238  VWLADRDSAIPDMHLVRGQGIAGENGIYGGWERLTHGAVR  277
             +   RD+A+P M  V G+G+ G   + G W RL  G V 
Sbjct  302  RFA--RDAAVPGMKWVWGEGVRGPEAVEGAWRRLLKGRVA  339



Lambda      K        H        a         alpha
   0.317    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00010102

Length=430
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431610 pfam11017, DUF2855, Protein of unknown function (DUF28...  385     3e-133


>CDD:431610 pfam11017, DUF2855, Protein of unknown function (DUF2855).  This 
family of proteins has no known function.
Length=339

 Score = 385 bits (990),  Expect = 3e-133, Method: Composition-based stats.
 Identities = 145/378 (38%), Positives = 206/378 (54%), Gaps = 43/378 (11%)

Query  48   GLTSNNLSYARGGDLLHWWETYPVPHTAPPPYNDQASWGIVPAWGYATVTESSVPGIAPD  107
             LT+NN++YA  GD L +W+ +PVP     PYND+  WGIVP WG+ATV ES+VPGIA  
Sbjct  1    ALTANNITYAALGDALGYWDFFPVP---AAPYNDRDEWGIVPVWGFATVVESTVPGIAVG  57

Query  108  SVIWGYWPTSTSPTLLRLEPSDLQ-GHWVEVSSHRQQLMPIYNRYEQILPENE--EPDEM  164
              ++GYWPT++      ++P DL    + E S HR  LMPIYNRY ++  +      +E 
Sbjct  58   ERLYGYWPTASHLV---VQPGDLNLEGFRETSPHRAGLMPIYNRYLRVSEDPAYRSDEEE  114

Query  165  EWGALLRGVWIAGYLLSEYVFSPDPRARVPVHPLGAASKLPWSAGDADLSSAVVVVLAAS  224
             W ALLR ++I  +LL++++F                    WSA DADL  AVVV+L+AS
Sbjct  115  AWQALLRPLFITSFLLNDFLFD------------------EWSAEDADLFGAVVVLLSAS  156

Query  225  TKTARSILWCLFNRPRESGPLGLVQVTSSPAALQKVASKKGWGDVSKSLAYTEIHQATRW  284
            +KTAR   + L  R + SGPL L+ +TS+P     VA  +G G   K +AY ++      
Sbjct  157  SKTARGFAFLLRRRRKASGPLALIGLTSAPN----VAFVEGLGLYDKVVAYDDLASLA--  210

Query  285  IEGRQPSKVVIIDCGARDHVLSQLYKSLQVSALQPCKTVIIQLGSQQKVYTTGEIQTARA  344
                   KVVI+D G R  +L+ L++ L     Q    V + +G   KVY++ E+Q A A
Sbjct  211  ----AARKVVIVDFGGRGGLLAALHEHLGD---QGRLVVSVLVGGTHKVYSSEELQEAMA  263

Query  345  DMQSMGK-IQFNASGVQDTLIDRDGAATYFGKISRSWKVWLADRDSAIPDMHLVRGQGIA  403
               ++ K +QF A    D  I   GA  YF +   +W+ +   RD+A+P M  V G+G+ 
Sbjct  264  SAAALPKPVQFFAPDQIDKRIKEWGAEEYFQRFDAAWQRFA--RDAAVPGMKWVWGEGVR  321

Query  404  GENGIYGGWERLTHGAVR  421
            G   + G W RL  G V 
Sbjct  322  GPEAVEGAWRRLLKGRVA  339



Lambda      K        H        a         alpha
   0.316    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521459360


Query= TCONS_00016970

Length=497


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 614710796


Query= TCONS_00010104

Length=611


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 775608132


Query= TCONS_00010105

Length=497


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 614710796


Query= TCONS_00016972

Length=611


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 775608132


Query= TCONS_00016971

Length=611


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0843    0.140     1.90     42.6     43.6 

Effective search space used: 775608132


Query= TCONS_00010107

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00016973

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00010108

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00016974

Length=116
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:281639 pfam03664, Glyco_hydro_62, Glycosyl hydrolase family 6...  97.0    2e-26


>CDD:281639 pfam03664, Glyco_hydro_62, Glycosyl hydrolase family 62.  Family 
of alpha -L-arabinofuranosidase (EC 3.2.1.55). This enzyme 
hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl 
side chains from arabinoxylan and arabinan.
Length=272

 Score = 97.0 bits (241),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 52/93 (56%), Positives = 64/93 (69%), Gaps = 6/93 (6%)

Query  6    IALSDSNPNNLFEASNVYRV--GNEYLLLVEAIGSDGNRYFRSWTAPSLTGTWTGLANTE  63
              +SD+  NNLFEA  VY V   N+YL++VEA+GS+G RYFRS+TA SL G WT  A TE
Sbjct  176  TIMSDTT-NNLFEAVQVYTVKGQNKYLMIVEAMGSNGQRYFRSFTASSLNGEWTPQAATE  234

Query  64   ANPFARSNNVVFSGTAWTKSISHGEMVRSQVDQ  96
            +NPFA   N   SG  WT  ISHG++VR+  DQ
Sbjct  235  SNPFAGKAN---SGATWTNDISHGDLVRNNPDQ  264



Lambda      K        H        a         alpha
   0.313    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00010109

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:281639 pfam03664, Glyco_hydro_62, Glycosyl hydrolase family 6...  127     9e-38


>CDD:281639 pfam03664, Glyco_hydro_62, Glycosyl hydrolase family 62.  Family 
of alpha -L-arabinofuranosidase (EC 3.2.1.55). This enzyme 
hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl 
side chains from arabinoxylan and arabinan.
Length=272

 Score = 127 bits (321),  Expect = 9e-38, Method: Composition-based stats.
 Identities = 67/130 (52%), Positives = 83/130 (64%), Gaps = 5/130 (4%)

Query  3    VICDSSNCYLFSSDDNGHLYRSQTTLSNFPNGMGNTVIALSDSNPNNLFEASNVYRV--G  60
            VI D +N YLF + DNG +YRS   + NFP   G+    +     NNLFEA  VY V   
Sbjct  138  VIGDDTNMYLFFAGDNGKIYRSSMPIGNFPGSFGSQYTTIMSDTTNNLFEAVQVYTVKGQ  197

Query  61   NEYLLLVEAIGSDGNRYFRSWTAPSLTGTWTGLANTEANPFARSNNVVFSGTAWTKSISH  120
            N+YL++VEA+GS+G RYFRS+TA SL G WT  A TE+NPFA   N   SG  WT  ISH
Sbjct  198  NKYLMIVEAMGSNGQRYFRSFTASSLNGEWTPQAATESNPFAGKAN---SGATWTNDISH  254

Query  121  GEMVRSQVDQ  130
            G++VR+  DQ
Sbjct  255  GDLVRNNPDQ  264



Lambda      K        H        a         alpha
   0.316    0.129    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00016975

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  135     1e-36
CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concana...  93.5    2e-22


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 135 bits (341),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 87/290 (30%), Positives = 121/290 (42%), Gaps = 41/290 (14%)

Query  22   PVLWEDLADLDIFRVDDTFYYSASTMHYSPGAPILQSYDLVNWEFVGHSVPTLDWGSIYN  81
            PVL     D  I RV D +Y + S+  + PG PI  S DLVNW+ VG     L   S  +
Sbjct  4    PVLPGFYPDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVNWKLVGPV---LVRRSQLS  60

Query  82   LDGGQAYVKGIWASTLRYRKSNGLWYWIGCIQFRTTYIYTAPSVTGPWTKSGVI--NTCL  139
              G  A     WA  + Y   +G +Y          ++ TA S  GPW+  G +      
Sbjct  61   GRGSNA----SWAPDISYH--DGKYYLYYTAVAHGIFVATADSPDGPWSDPGKLKSGGGG  114

Query  140  YDCSLLIDDDDTMYVAYGA-------TTISVAQLSSNGLSQV-KTQEVFKSTIGPI----  187
             D SL  DDD   Y+ +G          I + +L ++GL  V    ++       +    
Sbjct  115  IDPSLFHDDDGKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVGPVTKLIYPGTRWVGGKV  174

Query  188  -EGSRFYKINGEYYIFT----TLPANAEYVLKASSPWGPYTEK-----LLLKDIATPIAG  237
             EG   YK NG YY+      T    A  V ++ SP GPY        L  +    PI G
Sbjct  175  TEGPHLYKRNGYYYLTYAAGGTGGPYAVGVARSRSPLGPYEWHPGNPILTSRSPENPIYG  234

Query  238  GGVPHQGGIVDTPAGDWY--YMAF---VDSYPGGRVPVLAPITWGSDGFP  282
               P    +V+TP G+W+  Y A       Y  GR   + P+ W +DG+P
Sbjct  235  ---PGHASLVETPDGEWWIVYHAGRPGDGGYGLGRETRIQPVEWRADGWP  281


>CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concanavalin A-like 
domain.  This domain is found to the C-terminus of the 
pfam04616 domain. This domain adopts a concanavalin A-like 
fold.
Length=203

 Score = 93.5 bits (233),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 47/197 (24%), Positives = 74/197 (38%), Gaps = 22/197 (11%)

Query  310  KDTFQGTTLGPQWEWNHNP-DPTYYSVN---NGLTLKTATVTTDLYAARNTLTHRILGPD  365
            +D F    LG QW+W  NP D ++YS+      L L      + L+ A + L  R     
Sbjct  1    RDDFDSPKLGLQWQWLRNPRDESWYSLTERPGYLRLYGRESLSSLF-APSLLARRQQHFS  59

Query  366  STATIELTISNMKPGDRSGIAMLRDSS--AYVAVINNNGAFRVSMVAGLTMDANWNTLST  423
             TAT +L     K G+ +G+ +  +     Y+ V  +    RV  +    +  +   L+ 
Sbjct  60   FTATTKLEFEPQKEGEEAGLVVYYNEYNHYYLGVTKDEDGGRVLRL----VRCDNGELTE  115

Query  424  GSEVAGVNLSGSPSKIWLRAYANIQPGSGRTASFYYSTDGSSFHSIGAPY------TLNN  477
                  V L G    ++LR   +     G T  F YS DG  + +IG             
Sbjct  116  ELAEEEVPLGGEVKTVYLRVEVD-----GDTYQFSYSYDGKDWKTIGPELDASILSDEYA  170

Query  478  TWQFFMGYRYGIFNYAT  494
                F G   G++    
Sbjct  171  AGGGFTGAFVGLYATDN  187



Lambda      K        H        a         alpha
   0.317    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 652562446


Query= TCONS_00010111

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  134     2e-36
CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concana...  93.9    1e-22


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 134 bits (339),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 87/290 (30%), Positives = 121/290 (42%), Gaps = 41/290 (14%)

Query  12   PVLWEDLADLDIFRVDDTFYYSASTMHYSPGAPILQSYDLVNWEFVGHSVPTLDWGSIYN  71
            PVL     D  I RV D +Y + S+  + PG PI  S DLVNW+ VG     L   S  +
Sbjct  4    PVLPGFYPDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVNWKLVGPV---LVRRSQLS  60

Query  72   LDGGQAYVKGIWASTLRYRKSNGLWYWIGCIQFRTTYIYTAPSVTGPWTKSGVI--NTCL  129
              G  A     WA  + Y   +G +Y          ++ TA S  GPW+  G +      
Sbjct  61   GRGSNA----SWAPDISYH--DGKYYLYYTAVAHGIFVATADSPDGPWSDPGKLKSGGGG  114

Query  130  YDCSLLIDDDDTMYVAYGA-------TTISVAQLSSNGLSQV-KTQEVFKSTIGPI----  177
             D SL  DDD   Y+ +G          I + +L ++GL  V    ++       +    
Sbjct  115  IDPSLFHDDDGKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVGPVTKLIYPGTRWVGGKV  174

Query  178  -EGSRFYKINGEYYIFT----TLPANAEYVLKASSPWGPYTEK-----LLLKDIATPIAG  227
             EG   YK NG YY+      T    A  V ++ SP GPY        L  +    PI G
Sbjct  175  TEGPHLYKRNGYYYLTYAAGGTGGPYAVGVARSRSPLGPYEWHPGNPILTSRSPENPIYG  234

Query  228  GGVPHQGGIVDTPAGDWY--YMAF---VDSYPGGRVPVLAPITWGSDGFP  272
               P    +V+TP G+W+  Y A       Y  GR   + P+ W +DG+P
Sbjct  235  ---PGHASLVETPDGEWWIVYHAGRPGDGGYGLGRETRIQPVEWRADGWP  281


>CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concanavalin A-like 
domain.  This domain is found to the C-terminus of the 
pfam04616 domain. This domain adopts a concanavalin A-like 
fold.
Length=203

 Score = 93.9 bits (234),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 47/197 (24%), Positives = 74/197 (38%), Gaps = 22/197 (11%)

Query  300  KDTFQGTTLGPQWEWNHNP-DPTYYSVN---NGLTLKTATVTTDLYAARNTLTHRILGPD  355
            +D F    LG QW+W  NP D ++YS+      L L      + L+ A + L  R     
Sbjct  1    RDDFDSPKLGLQWQWLRNPRDESWYSLTERPGYLRLYGRESLSSLF-APSLLARRQQHFS  59

Query  356  STATIELTISNMKPGDRSGIAMLRDSS--AYVAVINNNGAFRVSMVAGLTMDANWNTLST  413
             TAT +L     K G+ +G+ +  +     Y+ V  +    RV  +    +  +   L+ 
Sbjct  60   FTATTKLEFEPQKEGEEAGLVVYYNEYNHYYLGVTKDEDGGRVLRL----VRCDNGELTE  115

Query  414  GSEVAGVNLSGSPSKIWLRAYANIQPGSGRTASFYYSTDGSSFHSIGAPY------TLNN  467
                  V L G    ++LR   +     G T  F YS DG  + +IG             
Sbjct  116  ELAEEEVPLGGEVKTVYLRVEVD-----GDTYQFSYSYDGKDWKTIGPELDASILSDEYA  170

Query  468  TWQFFMGYRYGIFNYAT  484
                F G   G++    
Sbjct  171  AGGGFTGAFVGLYATDN  187



Lambda      K        H        a         alpha
   0.316    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 637421786


Query= TCONS_00010112

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403197 pfam11905, DUF3425, Domain of unknown function (DUF342...  158     7e-47


>CDD:403197 pfam11905, DUF3425, Domain of unknown function (DUF3425).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
120 to 143 amino acids in length.
Length=128

 Score = 158 bits (401),  Expect = 7e-47, Method: Composition-based stats.
 Identities = 60/128 (47%), Positives = 71/128 (55%), Gaps = 6/128 (5%)

Query  417  DTAKNDMICAVQRIFTTLKPDLRPTKEQITIRHHPFIDILPSPTLRKNLIK--HQDELDE  474
                   I   Q  +  L P LRPT+EQITI H P+ID LP PTLR NLI+  HQ+E+DE
Sbjct  1    YHFSRWRISPSQETYARLPPFLRPTEEQITIPHPPWIDFLPWPTLRDNLIRAWHQEEIDE  60

Query  475  DEFFHDML-IGLVCWGGAGVGRRDRNLSTSYASTG---TPWDVRSWEARDWFIKKYWRLL  530
            DEFF D +  GLV W        D   +    S     TPWD   WE  + FIKKY  L+
Sbjct  61   DEFFRDYVSCGLVRWPWGESILEDNEPNELEISPAFASTPWDESGWELTEEFIKKYPELV  120

Query  531  GGEDGELV  538
             GEDGEL+
Sbjct  121  DGEDGELL  128



Lambda      K        H        a         alpha
   0.318    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 705370016


Query= TCONS_00010113

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403197 pfam11905, DUF3425, Domain of unknown function (DUF342...  159     6e-48


>CDD:403197 pfam11905, DUF3425, Domain of unknown function (DUF3425).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
120 to 143 amino acids in length.
Length=128

 Score = 159 bits (405),  Expect = 6e-48, Method: Composition-based stats.
 Identities = 60/128 (47%), Positives = 71/128 (55%), Gaps = 6/128 (5%)

Query  332  DTAKNDMICAVQRIFTTLKPDLRPTKEQITIRHHPFIDILPSPTLRKNLIK--HQDELDE  389
                   I   Q  +  L P LRPT+EQITI H P+ID LP PTLR NLI+  HQ+E+DE
Sbjct  1    YHFSRWRISPSQETYARLPPFLRPTEEQITIPHPPWIDFLPWPTLRDNLIRAWHQEEIDE  60

Query  390  DEFFHDML-IGLVCWGGAGVGRRDRNLSTSYASTG---TPWDVRSWEARDWFIKKYWRLL  445
            DEFF D +  GLV W        D   +    S     TPWD   WE  + FIKKY  L+
Sbjct  61   DEFFRDYVSCGLVRWPWGESILEDNEPNELEISPAFASTPWDESGWELTEEFIKKYPELV  120

Query  446  GGEDGELV  453
             GEDGEL+
Sbjct  121  DGEDGELL  128



Lambda      K        H        a         alpha
   0.318    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00010114

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403197 pfam11905, DUF3425, Domain of unknown function (DUF342...  158     9e-48


>CDD:403197 pfam11905, DUF3425, Domain of unknown function (DUF3425).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
120 to 143 amino acids in length.
Length=128

 Score = 158 bits (402),  Expect = 9e-48, Method: Composition-based stats.
 Identities = 60/128 (47%), Positives = 71/128 (55%), Gaps = 6/128 (5%)

Query  316  DTAKNDMICAVQRIFTTLKPDLRPTKEQITIRHHPFIDILPSPTLRKNLIK--HQDELDE  373
                   I   Q  +  L P LRPT+EQITI H P+ID LP PTLR NLI+  HQ+E+DE
Sbjct  1    YHFSRWRISPSQETYARLPPFLRPTEEQITIPHPPWIDFLPWPTLRDNLIRAWHQEEIDE  60

Query  374  DEFFHDML-IGLVCWGGAGVGRRDRNLSTSYASTG---TPWDVRSWEARDWFIKKYWRLL  429
            DEFF D +  GLV W        D   +    S     TPWD   WE  + FIKKY  L+
Sbjct  61   DEFFRDYVSCGLVRWPWGESILEDNEPNELEISPAFASTPWDESGWELTEEFIKKYPELV  120

Query  430  GGEDGELV  437
             GEDGEL+
Sbjct  121  DGEDGELL  128



Lambda      K        H        a         alpha
   0.318    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00010116

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          94.2    5e-26
CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        92.0    5e-25


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 94.2 bits (235),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 39/120 (33%), Positives = 56/120 (47%), Gaps = 8/120 (7%)

Query  15   VIITSSSDEKLEQAKKLGADYTINYRTNPNWNEEVMRVTNNHGADIILETGGS-ETLSKT  73
            VI    S+EKLE AK+LGAD+ IN +   +  EE+  +T   G D++ +  GS  TL + 
Sbjct  17   VIAVDGSEEKLELAKELGADHVINPK-ETDLVEEIKELTGGKGVDVVFDCVGSPATLEQA  75

Query  74   FDCVAFGGLIDCIGYTSGKQQNPNDTLNMNVLTLRKNLTIKGIINGPKDRFEEMVQFYEK  133
               +  GG +  +G   G        L +  L L K LTI G   G  + F E +     
Sbjct  76   LKLLRPGGRVVVVGLPGG-----PLPLPLAPLLL-KELTILGSFLGSPEEFPEALDLLAS  129


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 92.0 bits (229),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 68/143 (48%), Gaps = 18/143 (13%)

Query  31   LGADYTINYRTNPNWNEEVMRVTNNHGADIILETGGSETLSKTFDCVAFGGLIDCIGYTS  90
            LGAD  I+YRT      + ++ T   G D++L+T G E    +   +  GG +  IG   
Sbjct  1    LGADEVIDYRT-----TDFVQATGGEGVDVVLDTVGGEAFEASLRVLPGGGRLVTIG---  52

Query  91   GKQQNPNDTLNMNVLTLRKNLTIKGII------NGPKDRFEEMVQFYEKHQIHPVVNRIF  144
                 P  +  + +   ++       +      N   D  +E+    E+ ++ PV++R+F
Sbjct  53   ----GPPLSAGLLLPARKRGGRGVKYLFLFVRPNLGADILQELADLIEEGKLRPVIDRVF  108

Query  145  PFEESKEAFKFLASGAHFGKVVI  167
            P EE+ EA ++L SG   GK+V+
Sbjct  109  PLEEAAEAHRYLESGRARGKIVL  131



Lambda      K        H        a         alpha
   0.319    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00010115

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          94.2    5e-26
CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        92.0    5e-25


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 94.2 bits (235),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 39/120 (33%), Positives = 56/120 (47%), Gaps = 8/120 (7%)

Query  15   VIITSSSDEKLEQAKKLGADYTINYRTNPNWNEEVMRVTNNHGADIILETGGS-ETLSKT  73
            VI    S+EKLE AK+LGAD+ IN +   +  EE+  +T   G D++ +  GS  TL + 
Sbjct  17   VIAVDGSEEKLELAKELGADHVINPK-ETDLVEEIKELTGGKGVDVVFDCVGSPATLEQA  75

Query  74   FDCVAFGGLIDCIGYTSGKQQNPNDTLNMNVLTLRKNLTIKGIINGPKDRFEEMVQFYEK  133
               +  GG +  +G   G        L +  L L K LTI G   G  + F E +     
Sbjct  76   LKLLRPGGRVVVVGLPGG-----PLPLPLAPLLL-KELTILGSFLGSPEEFPEALDLLAS  129


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 92.0 bits (229),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 68/143 (48%), Gaps = 18/143 (13%)

Query  31   LGADYTINYRTNPNWNEEVMRVTNNHGADIILETGGSETLSKTFDCVAFGGLIDCIGYTS  90
            LGAD  I+YRT      + ++ T   G D++L+T G E    +   +  GG +  IG   
Sbjct  1    LGADEVIDYRT-----TDFVQATGGEGVDVVLDTVGGEAFEASLRVLPGGGRLVTIG---  52

Query  91   GKQQNPNDTLNMNVLTLRKNLTIKGII------NGPKDRFEEMVQFYEKHQIHPVVNRIF  144
                 P  +  + +   ++       +      N   D  +E+    E+ ++ PV++R+F
Sbjct  53   ----GPPLSAGLLLPARKRGGRGVKYLFLFVRPNLGADILQELADLIEEGKLRPVIDRVF  108

Query  145  PFEESKEAFKFLASGAHFGKVVI  167
            P EE+ EA ++L SG   GK+V+
Sbjct  109  PLEEAAEAHRYLESGRARGKIVL  131



Lambda      K        H        a         alpha
   0.319    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00010117

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403197 pfam11905, DUF3425, Domain of unknown function (DUF342...  158     4e-48


>CDD:403197 pfam11905, DUF3425, Domain of unknown function (DUF3425).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
120 to 143 amino acids in length.
Length=128

 Score = 158 bits (401),  Expect = 4e-48, Method: Composition-based stats.
 Identities = 60/128 (47%), Positives = 71/128 (55%), Gaps = 6/128 (5%)

Query  266  DTAKNDMICAVQRIFTTLKPDLRPTKEQITIRHHPFIDILPSPTLRKNLIK--HQDELDE  323
                   I   Q  +  L P LRPT+EQITI H P+ID LP PTLR NLI+  HQ+E+DE
Sbjct  1    YHFSRWRISPSQETYARLPPFLRPTEEQITIPHPPWIDFLPWPTLRDNLIRAWHQEEIDE  60

Query  324  DEFFHDML-IGLVCWGGAGVGRRDRNLSTSYASTG---TPWDVRSWEARDWFIKKYWRLL  379
            DEFF D +  GLV W        D   +    S     TPWD   WE  + FIKKY  L+
Sbjct  61   DEFFRDYVSCGLVRWPWGESILEDNEPNELEISPAFASTPWDESGWELTEEFIKKYPELV  120

Query  380  GGEDGELV  387
             GEDGEL+
Sbjct  121  DGEDGELL  128



Lambda      K        H        a         alpha
   0.317    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00010119

Length=292


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00010118

Length=292


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00010120

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00016978

Length=493


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00016977

Length=321


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 372672612


Query= TCONS_00016979

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          94.2    5e-26
CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        92.0    5e-25


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 94.2 bits (235),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 39/120 (33%), Positives = 56/120 (47%), Gaps = 8/120 (7%)

Query  15   VIITSSSDEKLEQAKKLGADYTINYRTNPNWNEEVMRVTNNHGADIILETGGS-ETLSKT  73
            VI    S+EKLE AK+LGAD+ IN +   +  EE+  +T   G D++ +  GS  TL + 
Sbjct  17   VIAVDGSEEKLELAKELGADHVINPK-ETDLVEEIKELTGGKGVDVVFDCVGSPATLEQA  75

Query  74   FDCVAFGGLIDCIGYTSGKQQNPNDTLNMNVLTLRKNLTIKGIINGPKDRFEEMVQFYEK  133
               +  GG +  +G   G        L +  L L K LTI G   G  + F E +     
Sbjct  76   LKLLRPGGRVVVVGLPGG-----PLPLPLAPLLL-KELTILGSFLGSPEEFPEALDLLAS  129


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 92.0 bits (229),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 68/143 (48%), Gaps = 18/143 (13%)

Query  31   LGADYTINYRTNPNWNEEVMRVTNNHGADIILETGGSETLSKTFDCVAFGGLIDCIGYTS  90
            LGAD  I+YRT      + ++ T   G D++L+T G E    +   +  GG +  IG   
Sbjct  1    LGADEVIDYRT-----TDFVQATGGEGVDVVLDTVGGEAFEASLRVLPGGGRLVTIG---  52

Query  91   GKQQNPNDTLNMNVLTLRKNLTIKGII------NGPKDRFEEMVQFYEKHQIHPVVNRIF  144
                 P  +  + +   ++       +      N   D  +E+    E+ ++ PV++R+F
Sbjct  53   ----GPPLSAGLLLPARKRGGRGVKYLFLFVRPNLGADILQELADLIEEGKLRPVIDRVF  108

Query  145  PFEESKEAFKFLASGAHFGKVVI  167
            P EE+ EA ++L SG   GK+V+
Sbjct  109  PLEEAAEAHRYLESGRARGKIVL  131



Lambda      K        H        a         alpha
   0.319    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00010121

Length=586


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 738247432


Query= TCONS_00010122

Length=288


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00010123

Length=321


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 372672612


Query= TCONS_00016980

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          94.2    5e-26
CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        92.0    5e-25


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 94.2 bits (235),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 39/120 (33%), Positives = 56/120 (47%), Gaps = 8/120 (7%)

Query  15   VIITSSSDEKLEQAKKLGADYTINYRTNPNWNEEVMRVTNNHGADIILETGGS-ETLSKT  73
            VI    S+EKLE AK+LGAD+ IN +   +  EE+  +T   G D++ +  GS  TL + 
Sbjct  17   VIAVDGSEEKLELAKELGADHVINPK-ETDLVEEIKELTGGKGVDVVFDCVGSPATLEQA  75

Query  74   FDCVAFGGLIDCIGYTSGKQQNPNDTLNMNVLTLRKNLTIKGIINGPKDRFEEMVQFYEK  133
               +  GG +  +G   G        L +  L L K LTI G   G  + F E +     
Sbjct  76   LKLLRPGGRVVVVGLPGG-----PLPLPLAPLLL-KELTILGSFLGSPEEFPEALDLLAS  129


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 92.0 bits (229),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 68/143 (48%), Gaps = 18/143 (13%)

Query  31   LGADYTINYRTNPNWNEEVMRVTNNHGADIILETGGSETLSKTFDCVAFGGLIDCIGYTS  90
            LGAD  I+YRT      + ++ T   G D++L+T G E    +   +  GG +  IG   
Sbjct  1    LGADEVIDYRT-----TDFVQATGGEGVDVVLDTVGGEAFEASLRVLPGGGRLVTIG---  52

Query  91   GKQQNPNDTLNMNVLTLRKNLTIKGII------NGPKDRFEEMVQFYEKHQIHPVVNRIF  144
                 P  +  + +   ++       +      N   D  +E+    E+ ++ PV++R+F
Sbjct  53   ----GPPLSAGLLLPARKRGGRGVKYLFLFVRPNLGADILQELADLIEEGKLRPVIDRVF  108

Query  145  PFEESKEAFKFLASGAHFGKVVI  167
            P EE+ EA ++L SG   GK+V+
Sbjct  109  PLEEAAEAHRYLESGRARGKIVL  131



Lambda      K        H        a         alpha
   0.319    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00010125

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00010124

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00010127

Length=310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397241 pfam03009, GDPD, Glycerophosphoryl diester phosphodies...  148     1e-43


>CDD:397241 pfam03009, GDPD, Glycerophosphoryl diester phosphodiesterase 
family.  E. coli has two sequence related isozymes of glycerophosphoryl 
diester phosphodiesterase (GDPD) - periplasmic and 
cytosolic. This family also includes agrocinopine synthase, 
the similarity to GDPD has been noted. This family appears 
to have weak but not significant matches to mammalian phospholipase 
C pfam00388, which suggests that this family may adopt 
a TIM barrel fold.
Length=244

 Score = 148 bits (375),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 70/242 (29%), Positives = 100/242 (41%), Gaps = 27/242 (11%)

Query  30   YPENTLESFRAAAAAGCDAIETDLRVSRDGVIVLCHDRSLERVYGVKRLVDECTWAELQS  89
            YPENTL SFR AA AG D IE D+++++DGV V+ HD +L+R       V + T  EL+ 
Sbjct  8    YPENTLASFRKAAEAGADYIEFDVQLTKDGVPVVLHDFNLDRTTDGAGYVRDLTLEELKR  67

Query  90   LKTT-----QAPH--VRMPRLVDFLAVLCEPGWEEMWAVLDIKLGNLPERIIPLL----A  138
            L              V  P L + L         ++   ++IK+    E I P       
Sbjct  68   LDIGAGNSGPLSGERVPFPTLEEVLEFD-----WDVGFNIEIKIKPYVEAIAPEEGLIVK  122

Query  139  EALESVP---SATPWSKRLVLGCWSAAFFPLCESYLPGFETALIGFDLWYAARVLRGSPA  195
            + L SV    +     +R++   ++           P      +     YA   L    A
Sbjct  123  DLLLSVDEILAKKADPRRVIFSSFNPDELKRLRELAPKLPLVFLSSGRAYAEADLLERAA  182

Query  196  AVNVNQKVLMGMG-------RGFLEEARAAGRRVFVWTVNEPSLMRWSIEQGVDGIITDD  248
            A       L+G            ++ A A G  V VWTVN    M+  +E GVDG+ITD 
Sbjct  183  AF-AGAPALLGEVALVDEALPDLVKRAHARGLVVHVWTVNNEDEMKRLLELGVDGVITDR  241

Query  249  PG  250
            P 
Sbjct  242  PD  243



Lambda      K        H        a         alpha
   0.322    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 355153814


Query= TCONS_00010126

Length=310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397241 pfam03009, GDPD, Glycerophosphoryl diester phosphodies...  148     1e-43


>CDD:397241 pfam03009, GDPD, Glycerophosphoryl diester phosphodiesterase 
family.  E. coli has two sequence related isozymes of glycerophosphoryl 
diester phosphodiesterase (GDPD) - periplasmic and 
cytosolic. This family also includes agrocinopine synthase, 
the similarity to GDPD has been noted. This family appears 
to have weak but not significant matches to mammalian phospholipase 
C pfam00388, which suggests that this family may adopt 
a TIM barrel fold.
Length=244

 Score = 148 bits (375),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 70/242 (29%), Positives = 100/242 (41%), Gaps = 27/242 (11%)

Query  30   YPENTLESFRAAAAAGCDAIETDLRVSRDGVIVLCHDRSLERVYGVKRLVDECTWAELQS  89
            YPENTL SFR AA AG D IE D+++++DGV V+ HD +L+R       V + T  EL+ 
Sbjct  8    YPENTLASFRKAAEAGADYIEFDVQLTKDGVPVVLHDFNLDRTTDGAGYVRDLTLEELKR  67

Query  90   LKTT-----QAPH--VRMPRLVDFLAVLCEPGWEEMWAVLDIKLGNLPERIIPLL----A  138
            L              V  P L + L         ++   ++IK+    E I P       
Sbjct  68   LDIGAGNSGPLSGERVPFPTLEEVLEFD-----WDVGFNIEIKIKPYVEAIAPEEGLIVK  122

Query  139  EALESVP---SATPWSKRLVLGCWSAAFFPLCESYLPGFETALIGFDLWYAARVLRGSPA  195
            + L SV    +     +R++   ++           P      +     YA   L    A
Sbjct  123  DLLLSVDEILAKKADPRRVIFSSFNPDELKRLRELAPKLPLVFLSSGRAYAEADLLERAA  182

Query  196  AVNVNQKVLMGMG-------RGFLEEARAAGRRVFVWTVNEPSLMRWSIEQGVDGIITDD  248
            A       L+G            ++ A A G  V VWTVN    M+  +E GVDG+ITD 
Sbjct  183  AF-AGAPALLGEVALVDEALPDLVKRAHARGLVVHVWTVNNEDEMKRLLELGVDGVITDR  241

Query  249  PG  250
            P 
Sbjct  242  PD  243



Lambda      K        H        a         alpha
   0.322    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 355153814


Query= TCONS_00016981

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00016982

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00010128

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462335 pfam07994, NAD_binding_5, Myo-inositol-1-phosphate syn...  839     0.0  
CDD:460285 pfam01658, Inos-1-P_synth, Myo-inositol-1-phosphate sy...  156     8e-47


>CDD:462335 pfam07994, NAD_binding_5, Myo-inositol-1-phosphate synthase. 
 This is a family of myo-inositol-1-phosphate synthases. Inositol-1-phosphate 
catalyzes the conversion of glucose-6- phosphate 
to inositol-1-phosphate, which is then dephosphorylated 
to inositol. Inositol phosphates play an important role in 
signal transduction.
Length=435

 Score = 839 bits (2170),  Expect = 0.0, Method: Composition-based stats.
 Identities = 299/437 (68%), Positives = 363/437 (83%), Gaps = 2/437 (0%)

Query  80   VGMMLVGWGGNNGSTVTAGILANRRRLVWETREGERAANYYGSLVMSSTVKLGTDSKTGE  139
            +G+MLVG GGNNG+T+TAGILANR+ L W T+EG + ANYYGS+  SST++LG DS  GE
Sbjct  1    LGVMLVGLGGNNGTTLTAGILANRKGLSWPTKEGVQKANYYGSVTQSSTIRLGKDS-EGE  59

Query  140  EINIPFHDMLPMIHPNDLVIGGWDISSMNLADAMDRAQVLEPTLKQLVRKEMAEMKPLPS  199
            ++ +PF D+LPM++PNDLV GGWDIS +NL +AM+RAQVL+  L++ ++ E+  +KPLPS
Sbjct  60   DVYVPFKDLLPMVNPNDLVFGGWDISGLNLYEAMERAQVLDYDLQEQLKPELEAIKPLPS  119

Query  200  IYYPDFIAANQEDRADNVIEGNKASWAHVERIQQDIRDFKAQNGLDKVIVMWTANTERYA  259
            IYYPDFIAANQ DRADNVI G  + W HVE+I++DIRDFK +NGLDKVIV+WTANTERYA
Sbjct  120  IYYPDFIAANQGDRADNVIPGT-SKWEHVEQIRKDIRDFKEKNGLDKVIVLWTANTERYA  178

Query  260  DIIPGVNDTADNLLNAIKAGHQEVAPSTVFAVACILENVPFINGSPQNTFVPGAIQLAEK  319
            +IIPGVNDTA+NLL AIK  H+E++PST++A A ILE  P+INGSPQNTFVPG I+LAEK
Sbjct  179  EIIPGVNDTAENLLKAIKNNHEEISPSTIYAYAAILEGCPYINGSPQNTFVPGLIELAEK  238

Query  320  HGAFIGGDDFKSGQTKMKSALVDFLINAGIKLTSIASYNHLGNNDGKNLSSQKQFRSKEI  379
            HG  I GDDFK+GQTKMKS L  FL+  G+K  SIASYNHLGNNDGKNLS  +QFRSKEI
Sbjct  239  HGVPIAGDDFKTGQTKMKSVLAPFLVARGLKPLSIASYNHLGNNDGKNLSDPEQFRSKEI  298

Query  380  SKSNVVDDMVAANHLLYKEGEHPDHTVVIKYMPAVGDNKRALDEYYAEIFMGGHQTISLF  439
            SKS+VVDDM+ +N LLYK GE PDH VVIKY+P VGD+KRA+DEY +EIF+GGH TIS+ 
Sbjct  299  SKSSVVDDMILSNLLLYKLGEKPDHCVVIKYVPYVGDSKRAMDEYTSEIFLGGHNTISIH  358

Query  440  NICEDSLLASPLIIDLVVIAEMMTRITWKSADDEEYKGFHSVLSVLSYMLKAPLTPPGTP  499
            N CEDSLLA+PLI+DLV++AE+ TR+ +K  D +E+K FH VLS LSY LKAPL PPGTP
Sbjct  359  NTCEDSLLAAPLILDLVLLAELATRVGYKDEDGKEFKSFHGVLSWLSYFLKAPLVPPGTP  418

Query  500  VVNALAKQRSALTNIFR  516
            VVN L KQR+AL N  R
Sbjct  419  VVNDLFKQRAALENFLR  435


>CDD:460285 pfam01658, Inos-1-P_synth, Myo-inositol-1-phosphate synthase. 
 This is a family of myo-inositol-1-phosphate synthases. Inositol-1-phosphate 
catalyzes the conversion of glucose-6- phosphate 
to inositol-1-phosphate, which is then dephosphorylated 
to inositol. Inositol phosphates play an important role 
in signal transduction.
Length=104

 Score = 156 bits (398),  Expect = 8e-47, Method: Composition-based stats.
 Identities = 46/113 (41%), Positives = 62/113 (55%), Gaps = 9/113 (8%)

Query  332  GQTKMKSALVDFLINAGIKLTSIASYNHLGNNDGKNLSSQKQFRSKEISKSNVVDDMVAA  391
            G T +KS L   L++ G+K+ S    N LGN DG NL   ++ +SK+ISKS+VVD ++  
Sbjct  1    GATILKSVLAPLLVDRGLKVLSWYQLNILGNTDGLNLLDPERLKSKKISKSSVVDSILGY  60

Query  392  NHLLYKEGEHPDHTVVIKYMPAVGDNKRALDEYYAEIFMGGHQTISLFNICED  444
            N LLY         V I Y+P +GD K A D    E F+G   TI +    ED
Sbjct  61   NPLLY---------VHIDYVPFLGDRKVAWDRIEGEGFLGVPMTIEVTLEVED  104



Lambda      K        H        a         alpha
   0.316    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 670731238


Query= TCONS_00016984

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00016985

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00016986

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462335 pfam07994, NAD_binding_5, Myo-inositol-1-phosphate syn...  834     0.0  
CDD:460285 pfam01658, Inos-1-P_synth, Myo-inositol-1-phosphate sy...  156     9e-47


>CDD:462335 pfam07994, NAD_binding_5, Myo-inositol-1-phosphate synthase. 
 This is a family of myo-inositol-1-phosphate synthases. Inositol-1-phosphate 
catalyzes the conversion of glucose-6- phosphate 
to inositol-1-phosphate, which is then dephosphorylated 
to inositol. Inositol phosphates play an important role in 
signal transduction.
Length=435

 Score = 834 bits (2158),  Expect = 0.0, Method: Composition-based stats.
 Identities = 298/436 (68%), Positives = 362/436 (83%), Gaps = 2/436 (0%)

Query  80   VGMMLVGWGGNNGSTVTAGILANRRRLVWETREGERAANYYGSLVMSSTVKLGTDSKTGE  139
            +G+MLVG GGNNG+T+TAGILANR+ L W T+EG + ANYYGS+  SST++LG DS  GE
Sbjct  1    LGVMLVGLGGNNGTTLTAGILANRKGLSWPTKEGVQKANYYGSVTQSSTIRLGKDS-EGE  59

Query  140  EINIPFHDMLPMIHPNDLVIGGWDISSMNLADAMDRAQVLEPTLKQLVRKEMAEMKPLPS  199
            ++ +PF D+LPM++PNDLV GGWDIS +NL +AM+RAQVL+  L++ ++ E+  +KPLPS
Sbjct  60   DVYVPFKDLLPMVNPNDLVFGGWDISGLNLYEAMERAQVLDYDLQEQLKPELEAIKPLPS  119

Query  200  IYYPDFIAANQEDRADNVIEGNKASWAHVERIQQDIRDFKAQNGLDKVIVMWTANTERYA  259
            IYYPDFIAANQ DRADNVI G  + W HVE+I++DIRDFK +NGLDKVIV+WTANTERYA
Sbjct  120  IYYPDFIAANQGDRADNVIPGT-SKWEHVEQIRKDIRDFKEKNGLDKVIVLWTANTERYA  178

Query  260  DIIPGVNDTADNLLNAIKAGHQEVAPSTVFAVACILENVPFINGSPQNTFVPGAIQLAEK  319
            +IIPGVNDTA+NLL AIK  H+E++PST++A A ILE  P+INGSPQNTFVPG I+LAEK
Sbjct  179  EIIPGVNDTAENLLKAIKNNHEEISPSTIYAYAAILEGCPYINGSPQNTFVPGLIELAEK  238

Query  320  HGAFIGGDDFKSGQTKMKSALVDFLINAGIKLTSIASYNHLGNNDGKNLSSQKQFRSKEI  379
            HG  I GDDFK+GQTKMKS L  FL+  G+K  SIASYNHLGNNDGKNLS  +QFRSKEI
Sbjct  239  HGVPIAGDDFKTGQTKMKSVLAPFLVARGLKPLSIASYNHLGNNDGKNLSDPEQFRSKEI  298

Query  380  SKSNVVDDMVAANHLLYKEGEHPDHTVVIKYMPAVGDNKRALDEYYAEIFMGGHQTISLF  439
            SKS+VVDDM+ +N LLYK GE PDH VVIKY+P VGD+KRA+DEY +EIF+GGH TIS+ 
Sbjct  299  SKSSVVDDMILSNLLLYKLGEKPDHCVVIKYVPYVGDSKRAMDEYTSEIFLGGHNTISIH  358

Query  440  NICEDSLLASPLIIDLVVIAEMMTRITWKSADDEEYKGFHSVLSVLSYMLKAPLTPPGTP  499
            N CEDSLLA+PLI+DLV++AE+ TR+ +K  D +E+K FH VLS LSY LKAPL PPGTP
Sbjct  359  NTCEDSLLAAPLILDLVLLAELATRVGYKDEDGKEFKSFHGVLSWLSYFLKAPLVPPGTP  418

Query  500  VVNALAKQRSALTNIF  515
            VVN L KQR+AL N  
Sbjct  419  VVNDLFKQRAALENFL  434


>CDD:460285 pfam01658, Inos-1-P_synth, Myo-inositol-1-phosphate synthase. 
 This is a family of myo-inositol-1-phosphate synthases. Inositol-1-phosphate 
catalyzes the conversion of glucose-6- phosphate 
to inositol-1-phosphate, which is then dephosphorylated 
to inositol. Inositol phosphates play an important role 
in signal transduction.
Length=104

 Score = 156 bits (397),  Expect = 9e-47, Method: Composition-based stats.
 Identities = 46/113 (41%), Positives = 62/113 (55%), Gaps = 9/113 (8%)

Query  332  GQTKMKSALVDFLINAGIKLTSIASYNHLGNNDGKNLSSQKQFRSKEISKSNVVDDMVAA  391
            G T +KS L   L++ G+K+ S    N LGN DG NL   ++ +SK+ISKS+VVD ++  
Sbjct  1    GATILKSVLAPLLVDRGLKVLSWYQLNILGNTDGLNLLDPERLKSKKISKSSVVDSILGY  60

Query  392  NHLLYKEGEHPDHTVVIKYMPAVGDNKRALDEYYAEIFMGGHQTISLFNICED  444
            N LLY         V I Y+P +GD K A D    E F+G   TI +    ED
Sbjct  61   NPLLY---------VHIDYVPFLGDRKVAWDRIEGEGFLGVPMTIEVTLEVED  104



Lambda      K        H        a         alpha
   0.316    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00016988

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462335 pfam07994, NAD_binding_5, Myo-inositol-1-phosphate syn...  537     0.0  
CDD:460285 pfam01658, Inos-1-P_synth, Myo-inositol-1-phosphate sy...  157     1e-49


>CDD:462335 pfam07994, NAD_binding_5, Myo-inositol-1-phosphate synthase. 
 This is a family of myo-inositol-1-phosphate synthases. Inositol-1-phosphate 
catalyzes the conversion of glucose-6- phosphate 
to inositol-1-phosphate, which is then dephosphorylated 
to inositol. Inositol phosphates play an important role in 
signal transduction.
Length=435

 Score = 537 bits (1386),  Expect = 0.0, Method: Composition-based stats.
 Identities = 189/267 (71%), Positives = 222/267 (83%), Gaps = 0/267 (0%)

Query  1    MWTANTERYADIIPGVNDTADNLLNAIKAGHQEVAPSTVFAVACILENVPFINGSPQNTF  60
            +WTANTERYA+IIPGVNDTA+NLL AIK  H+E++PST++A A ILE  P+INGSPQNTF
Sbjct  169  LWTANTERYAEIIPGVNDTAENLLKAIKNNHEEISPSTIYAYAAILEGCPYINGSPQNTF  228

Query  61   VPGAIQLAEKHGAFIGGDDFKSGQTKMKSALVDFLINAGIKLTSIASYNHLGNNDGKNLS  120
            VPG I+LAEKHG  I GDDFK+GQTKMKS L  FL+  G+K  SIASYNHLGNNDGKNLS
Sbjct  229  VPGLIELAEKHGVPIAGDDFKTGQTKMKSVLAPFLVARGLKPLSIASYNHLGNNDGKNLS  288

Query  121  SQKQFRSKEISKSNVVDDMVAANHLLYKEGEHPDHTVVIKYMPAVGDNKRALDEYYAEIF  180
              +QFRSKEISKS+VVDDM+ +N LLYK GE PDH VVIKY+P VGD+KRA+DEY +EIF
Sbjct  289  DPEQFRSKEISKSSVVDDMILSNLLLYKLGEKPDHCVVIKYVPYVGDSKRAMDEYTSEIF  348

Query  181  MGGHQTISLFNICEDSLLASPLIIDLVVIAEMMTRITWKSADDEEYKGFHSVLSVLSYML  240
            +GGH TIS+ N CEDSLLA+PLI+DLV++AE+ TR+ +K  D +E+K FH VLS LSY L
Sbjct  349  LGGHNTISIHNTCEDSLLAAPLILDLVLLAELATRVGYKDEDGKEFKSFHGVLSWLSYFL  408

Query  241  KAPLTPPGTPVVNALAKQRSALTNIFR  267
            KAPL PPGTPVVN L KQR+AL N  R
Sbjct  409  KAPLVPPGTPVVNDLFKQRAALENFLR  435


>CDD:460285 pfam01658, Inos-1-P_synth, Myo-inositol-1-phosphate synthase. 
 This is a family of myo-inositol-1-phosphate synthases. Inositol-1-phosphate 
catalyzes the conversion of glucose-6- phosphate 
to inositol-1-phosphate, which is then dephosphorylated 
to inositol. Inositol phosphates play an important role 
in signal transduction.
Length=104

 Score = 157 bits (400),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 46/113 (41%), Positives = 62/113 (55%), Gaps = 9/113 (8%)

Query  83   GQTKMKSALVDFLINAGIKLTSIASYNHLGNNDGKNLSSQKQFRSKEISKSNVVDDMVAA  142
            G T +KS L   L++ G+K+ S    N LGN DG NL   ++ +SK+ISKS+VVD ++  
Sbjct  1    GATILKSVLAPLLVDRGLKVLSWYQLNILGNTDGLNLLDPERLKSKKISKSSVVDSILGY  60

Query  143  NHLLYKEGEHPDHTVVIKYMPAVGDNKRALDEYYAEIFMGGHQTISLFNICED  195
            N LLY         V I Y+P +GD K A D    E F+G   TI +    ED
Sbjct  61   NPLLY---------VHIDYVPFLGDRKVAWDRIEGEGFLGVPMTIEVTLEVED  104



Lambda      K        H        a         alpha
   0.317    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00010130

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00010131

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00010132

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461990 pfam06699, PIG-F, GPI biosynthesis protein family Pig-...  227     7e-76


>CDD:461990 pfam06699, PIG-F, GPI biosynthesis protein family Pig-F.  PIG-F 
is involved in glycosylphosphatidylinositol (GPI) anchor 
biosynthesis.
Length=182

 Score = 227 bits (582),  Expect = 7e-76, Method: Composition-based stats.
 Identities = 111/229 (48%), Positives = 137/229 (60%), Gaps = 47/229 (21%)

Query  46   VHPAALLAILATRFQALVADPVAEMLNTLPFLALLQVTYVMVCLPPAGSVLPSPPASPVS  105
            V P  LL++L  RF ALVADPV+ +L +LP LA+LQV YV +CLP               
Sbjct  1    VLPFLLLSLLYLRFSALVADPVSTLLKSLPVLAVLQVVYVYLCLPG--------------  46

Query  106  DGDEKEKEKEKEKEKEKEKRKLPLRAGKLPRKKNQTHAAGLSAKLTPALLSLILTFLLAT  165
                                          +KK    +   S  +  A+LSL+LT LL T
Sbjct  47   -----------------------------EKKK----SGSKSNNIPLAILSLLLTLLLGT  73

Query  166  PVLSLLLVLFGAPLTTHNAETVLCAAHMALLASTALIYVHGVDGAVWREVWAFARPADAV  225
            P+L +LLVLFGAPLTTH  ET LCAAH++LL    L+YVHGVDGA WR V++ +RP D V
Sbjct  74   PLLHILLVLFGAPLTTHLPETFLCAAHLSLLTFFPLLYVHGVDGAAWRRVFSLSRPIDEV  133

Query  226  WGGALGTALGAWFGAVPIPLDWDRPWQAFPITILTGAYFGFAVGSVVCR  274
             GG LG  +GAW GA+PIPLDWDRPWQ +PITILTGAY G+ VGS++  
Sbjct  134  LGGLLGAVVGAWLGAIPIPLDWDRPWQKWPITILTGAYIGYVVGSLIGL  182



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00016990

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459875 pfam00620, RhoGAP, RhoGAP domain. GTPase activator pro...  131     4e-37


>CDD:459875 pfam00620, RhoGAP, RhoGAP domain.  GTPase activator proteins 
towards Rho/Rac/Cdc42-like small GTPases.
Length=148

 Score = 131 bits (333),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 92/166 (55%), Gaps = 18/166 (11%)

Query  90   PIVVAKCGVFLKEKATDVEGIFRLNGSAKRIKDLQEIFDSPERYGKGLDWTGYTVHDAAN  149
            P++V KC  +L+++  D EGIFR++GSA RIK+L+E FD        LD     VH  A+
Sbjct  1    PLIVRKCVEYLEKRGLDTEGIFRVSGSASRIKELREAFDRGPDVD--LDLEEEDVHVVAS  58

Query  150  VLRRYLNQLPEPIVPLDFYERFREPLRAYQRQVQENGSTADSDAFDHAKAVAAYQQLIRE  209
            +L+ +L +LPEP++  + YE F   + A +   +E               + A ++L+R+
Sbjct  59   LLKLFLRELPEPLLTFELYEEF---IEAAKLPDEEE-------------RLEALRELLRK  102

Query  210  LPPLNKQLLLYILDLLAVFASKSDQNRMTSANLSAIFQPGLLSHPQ  255
            LPP N+  L Y+L  L   A  SD N+M + NL+ +F P LL  P 
Sbjct  103  LPPANRDTLRYLLAHLNRVAQNSDVNKMNAHNLAIVFGPTLLRPPD  148



Lambda      K        H        a         alpha
   0.312    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00016989

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459875 pfam00620, RhoGAP, RhoGAP domain. GTPase activator pro...  130     9e-37


>CDD:459875 pfam00620, RhoGAP, RhoGAP domain.  GTPase activator proteins 
towards Rho/Rac/Cdc42-like small GTPases.
Length=148

 Score = 130 bits (330),  Expect = 9e-37, Method: Composition-based stats.
 Identities = 59/166 (36%), Positives = 91/166 (55%), Gaps = 18/166 (11%)

Query  90   PIVVAKCGVFLKEKATDVEGIFRLNGSAKRIKDLQEIFDSPERYGKGLDWTGYTVHDAAN  149
            P++V KC  +L+++  D EGIFR++GSA RIK+L+E FD        LD     VH  A+
Sbjct  1    PLIVRKCVEYLEKRGLDTEGIFRVSGSASRIKELREAFDRGPDVD--LDLEEEDVHVVAS  58

Query  150  VLRRYLNQLPEPIVPLDFYERFREPLRAYQRQVQENGSTADSDAFDHAKAVAAYQQLIRE  209
            +L+ +L +LPEP++  + YE F E  +    + +                + A ++L+R+
Sbjct  59   LLKLFLRELPEPLLTFELYEEFIEAAKLPDEEER----------------LEALRELLRK  102

Query  210  LPPLNKQLLLYILDLLAVFASKSDQNRMTSANLSAIFQPGLLSHPQ  255
            LPP N+  L Y+L  L   A  SD N+M + NL+ +F P LL  P 
Sbjct  103  LPPANRDTLRYLLAHLNRVAQNSDVNKMNAHNLAIVFGPTLLRPPD  148



Lambda      K        H        a         alpha
   0.316    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00010133

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461990 pfam06699, PIG-F, GPI biosynthesis protein family Pig-...  174     1e-55


>CDD:461990 pfam06699, PIG-F, GPI biosynthesis protein family Pig-F.  PIG-F 
is involved in glycosylphosphatidylinositol (GPI) anchor 
biosynthesis.
Length=182

 Score = 174 bits (443),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 113/202 (56%), Gaps = 47/202 (23%)

Query  46   VHPAALLAILATRFQALVADPVAEMLNTLPFLALLQVTYVMVCLPPAGSVLPSPPASPVS  105
            V P  LL++L  RF ALVADPV+ +L +LP LA+LQV YV +CLP               
Sbjct  1    VLPFLLLSLLYLRFSALVADPVSTLLKSLPVLAVLQVVYVYLCLP---------------  45

Query  106  DGDEKEKEKEKEKEKEKEKRKLPLRAGKLPRKKNQTHAAGLSAKLTPALLSLILTFLLAT  165
                                              +  +   S  +  A+LSL+LT LL T
Sbjct  46   --------------------------------GEKKKSGSKSNNIPLAILSLLLTLLLGT  73

Query  166  PVLSLLLVLFGAPLTTHNAETVLCAAHMALLASTALIYVHGVDGAVWREVWAFARPADAV  225
            P+L +LLVLFGAPLTTH  ET LCAAH++LL    L+YVHGVDGA WR V++ +RP D V
Sbjct  74   PLLHILLVLFGAPLTTHLPETFLCAAHLSLLTFFPLLYVHGVDGAAWRRVFSLSRPIDEV  133

Query  226  WGGALGTALGAWFGAVPIPLDW  247
             GG LG  +GAW GA+PIPLDW
Sbjct  134  LGGLLGAVVGAWLGAIPIPLDW  155



Lambda      K        H        a         alpha
   0.318    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00010134

Length=879
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459875 pfam00620, RhoGAP, RhoGAP domain. GTPase activator pro...  131     5e-36


>CDD:459875 pfam00620, RhoGAP, RhoGAP domain.  GTPase activator proteins 
towards Rho/Rac/Cdc42-like small GTPases.
Length=148

 Score = 131 bits (332),  Expect = 5e-36, Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 92/166 (55%), Gaps = 18/166 (11%)

Query  115  PIVVAKCGVFLKEKATDVEGIFRLNGSAKRIKDLQEIFDSPERYGKGLDWTGYTVHDAAN  174
            P++V KC  +L+++  D EGIFR++GSA RIK+L+E FD        LD     VH  A+
Sbjct  1    PLIVRKCVEYLEKRGLDTEGIFRVSGSASRIKELREAFDRGPDVD--LDLEEEDVHVVAS  58

Query  175  VLRRYLNQLPEPIVPLDFYERFREPLRAYQRQVQENGSTADSDAFDHAKAVAAYQQLIRE  234
            +L+ +L +LPEP++  + YE F   + A +   +E               + A ++L+R+
Sbjct  59   LLKLFLRELPEPLLTFELYEEF---IEAAKLPDEEE-------------RLEALRELLRK  102

Query  235  LPPLNKQLLLYILDLLAVFASKSDQNRMTSANLSAIFQPGLLSHPQ  280
            LPP N+  L Y+L  L   A  SD N+M + NL+ +F P LL  P 
Sbjct  103  LPPANRDTLRYLLAHLNRVAQNSDVNKMNAHNLAIVFGPTLLRPPD  148



Lambda      K        H        a         alpha
   0.308    0.125    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1125442976


Query= TCONS_00010135

Length=618


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.121    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 786069128


Query= TCONS_00016991

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461990 pfam06699, PIG-F, GPI biosynthesis protein family Pig-...  227     7e-76


>CDD:461990 pfam06699, PIG-F, GPI biosynthesis protein family Pig-F.  PIG-F 
is involved in glycosylphosphatidylinositol (GPI) anchor 
biosynthesis.
Length=182

 Score = 227 bits (582),  Expect = 7e-76, Method: Composition-based stats.
 Identities = 111/229 (48%), Positives = 137/229 (60%), Gaps = 47/229 (21%)

Query  46   VHPAALLAILATRFQALVADPVAEMLNTLPFLALLQVTYVMVCLPPAGSVLPSPPASPVS  105
            V P  LL++L  RF ALVADPV+ +L +LP LA+LQV YV +CLP               
Sbjct  1    VLPFLLLSLLYLRFSALVADPVSTLLKSLPVLAVLQVVYVYLCLPG--------------  46

Query  106  DGDEKEKEKEKEKEKEKEKRKLPLRAGKLPRKKNQTHAAGLSAKLTPALLSLILTFLLAT  165
                                          +KK    +   S  +  A+LSL+LT LL T
Sbjct  47   -----------------------------EKKK----SGSKSNNIPLAILSLLLTLLLGT  73

Query  166  PVLSLLLVLFGAPLTTHNAETVLCAAHMALLASTALIYVHGVDGAVWREVWAFARPADAV  225
            P+L +LLVLFGAPLTTH  ET LCAAH++LL    L+YVHGVDGA WR V++ +RP D V
Sbjct  74   PLLHILLVLFGAPLTTHLPETFLCAAHLSLLTFFPLLYVHGVDGAAWRRVFSLSRPIDEV  133

Query  226  WGGALGTALGAWFGAVPIPLDWDRPWQAFPITILTGAYFGFAVGSVVCR  274
             GG LG  +GAW GA+PIPLDWDRPWQ +PITILTGAY G+ VGS++  
Sbjct  134  LGGLLGAVVGAWLGAIPIPLDWDRPWQKWPITILTGAYIGYVVGSLIGL  182



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00016992

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461990 pfam06699, PIG-F, GPI biosynthesis protein family Pig-...  174     1e-55


>CDD:461990 pfam06699, PIG-F, GPI biosynthesis protein family Pig-F.  PIG-F 
is involved in glycosylphosphatidylinositol (GPI) anchor 
biosynthesis.
Length=182

 Score = 174 bits (443),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 113/202 (56%), Gaps = 47/202 (23%)

Query  46   VHPAALLAILATRFQALVADPVAEMLNTLPFLALLQVTYVMVCLPPAGSVLPSPPASPVS  105
            V P  LL++L  RF ALVADPV+ +L +LP LA+LQV YV +CLP               
Sbjct  1    VLPFLLLSLLYLRFSALVADPVSTLLKSLPVLAVLQVVYVYLCLP---------------  45

Query  106  DGDEKEKEKEKEKEKEKEKRKLPLRAGKLPRKKNQTHAAGLSAKLTPALLSLILTFLLAT  165
                                              +  +   S  +  A+LSL+LT LL T
Sbjct  46   --------------------------------GEKKKSGSKSNNIPLAILSLLLTLLLGT  73

Query  166  PVLSLLLVLFGAPLTTHNAETVLCAAHMALLASTALIYVHGVDGAVWREVWAFARPADAV  225
            P+L +LLVLFGAPLTTH  ET LCAAH++LL    L+YVHGVDGA WR V++ +RP D V
Sbjct  74   PLLHILLVLFGAPLTTHLPETFLCAAHLSLLTFFPLLYVHGVDGAAWRRVFSLSRPIDEV  133

Query  226  WGGALGTALGAWFGAVPIPLDW  247
             GG LG  +GAW GA+PIPLDW
Sbjct  134  LGGLLGAVVGAWLGAIPIPLDW  155



Lambda      K        H        a         alpha
   0.318    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00010136

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461990 pfam06699, PIG-F, GPI biosynthesis protein family Pig-...  227     7e-76


>CDD:461990 pfam06699, PIG-F, GPI biosynthesis protein family Pig-F.  PIG-F 
is involved in glycosylphosphatidylinositol (GPI) anchor 
biosynthesis.
Length=182

 Score = 227 bits (582),  Expect = 7e-76, Method: Composition-based stats.
 Identities = 111/229 (48%), Positives = 137/229 (60%), Gaps = 47/229 (21%)

Query  46   VHPAALLAILATRFQALVADPVAEMLNTLPFLALLQVTYVMVCLPPAGSVLPSPPASPVS  105
            V P  LL++L  RF ALVADPV+ +L +LP LA+LQV YV +CLP               
Sbjct  1    VLPFLLLSLLYLRFSALVADPVSTLLKSLPVLAVLQVVYVYLCLPG--------------  46

Query  106  DGDEKEKEKEKEKEKEKEKRKLPLRAGKLPRKKNQTHAAGLSAKLTPALLSLILTFLLAT  165
                                          +KK    +   S  +  A+LSL+LT LL T
Sbjct  47   -----------------------------EKKK----SGSKSNNIPLAILSLLLTLLLGT  73

Query  166  PVLSLLLVLFGAPLTTHNAETVLCAAHMALLASTALIYVHGVDGAVWREVWAFARPADAV  225
            P+L +LLVLFGAPLTTH  ET LCAAH++LL    L+YVHGVDGA WR V++ +RP D V
Sbjct  74   PLLHILLVLFGAPLTTHLPETFLCAAHLSLLTFFPLLYVHGVDGAAWRRVFSLSRPIDEV  133

Query  226  WGGALGTALGAWFGAVPIPLDWDRPWQAFPITILTGAYFGFAVGSVVCR  274
             GG LG  +GAW GA+PIPLDWDRPWQ +PITILTGAY G+ VGS++  
Sbjct  134  LGGLLGAVVGAWLGAIPIPLDWDRPWQKWPITILTGAYIGYVVGSLIGL  182



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00010137

Length=167
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461990 pfam06699, PIG-F, GPI biosynthesis protein family Pig-...  63.7    1e-13


>CDD:461990 pfam06699, PIG-F, GPI biosynthesis protein family Pig-F.  PIG-F 
is involved in glycosylphosphatidylinositol (GPI) anchor 
biosynthesis.
Length=182

 Score = 63.7 bits (156),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 34/45 (76%), Gaps = 0/45 (0%)

Query  46  VHPAALLAILATRFQALVADPVAEMLNTLPFLALLQVTYVMVCLP  90
           V P  LL++L  RF ALVADPV+ +L +LP LA+LQV YV +CLP
Sbjct  1   VLPFLLLSLLYLRFSALVADPVSTLLKSLPVLAVLQVVYVYLCLP  45



Lambda      K        H        a         alpha
   0.312    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00010138

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425841 pfam00730, HhH-GPD, HhH-GPD superfamily base excision ...  125     4e-35


>CDD:425841 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair 
protein.  This family contains a diverse range of structurally 
related DNA repair proteins. The superfamily is called 
the HhH-GPD family after its hallmark Helix-hairpin-helix 
and Gly/Pro rich loop followed by a conserved aspartate. This 
includes endonuclease III, EC:4.2.99.18 and MutY an A/G-specific 
adenine glycosylase, both have a C terminal 4Fe-4S cluster. 
The family also includes 8-oxoguanine DNA glycosylases. 
The methyl-CPG binding protein MBD4 also contains a related 
domain that is a thymine DNA glycosylase. The family also 
includes DNA-3-methyladenine glycosylase II EC:3.2.2.21 and 
other members of the AlkA family.
Length=141

 Score = 125 bits (317),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 67/172 (39%), Gaps = 34/172 (20%)

Query  218  IALMLSSQTKDTVTAVAMQRLHTELGNGRALAEDPIVKKEEQEDIDLKSSQPLKDSTLNL  277
            ++ +LS QT D       +RL  +                                    
Sbjct  1    VSAILSQQTSDKAVNKITERLFEKFF-------------------------------PTP  29

Query  278  ENILAVSPEKLNELIRTVGFHNNKTKYIKAAAEILRDQYNSDIPSTAEELMK-LPGVGPK  336
            E++     E+L ELIR +GF+  K KY+K  A IL + Y  ++P   EEL   L GVG  
Sbjct  30   EDLADADEEELRELIRGLGFYRRKAKYLKELARILVEGYGGEVPLDEEELEALLKGVGRW  89

Query  337  MAYLCMSAAWGK-DEGIGVDVHVHRITNLWGWHKT-KTPEETRMALESWLPR  386
             A   +  A G+ D    VD HV R+    G  K   TP+E    LE   P 
Sbjct  90   TAEAVLIFALGRPDPLPVVDTHVRRVLKRLGLIKEKPTPKEVERELEELWPP  141



Lambda      K        H        a         alpha
   0.313    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 569004184


Query= TCONS_00010139

Length=132
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426921 pfam02678, Pirin, Pirin. This family consists of Pirin...  76.5    7e-20


>CDD:426921 pfam02678, Pirin, Pirin.  This family consists of Pirin proteins 
from both eukaryotes and prokaryotes. The function of Pirin 
is unknown but the gene coding for this protein is known 
to be expressed in all tissues in the human body although it 
is expressed most strongly in the liver and heart. Pirin is 
known to be a nuclear protein, exclusively localized within 
the nucleoplasma and predominantly concentrated within dot-like 
subnuclear structures. A tomato homolog of human Pirin 
has been found to be induced during programmed cell death. 
Human Pirin interacts with Bcl-3 and NFI and hence is probably 
involved in the regulation of DNA transcription and replication. 
It appears to be an Fe(II)-containing member of the 
Cupin superfamily.
Length=104

 Score = 76.5 bits (189),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 35/95 (37%), Positives = 44/95 (46%), Gaps = 21/95 (22%)

Query  23   HGGWLKTYHTFSFADYFDHRFLNFGCLRVLNEDRVAARNGFPLHTHRDAEIFSYILSGEL  82
              GWL++   FSF DYF       G              GFP H HR  E  +Y+L GE+
Sbjct  10   GAGWLQSVDPFSFLDYFGPAEFGPGYGA-----------GFPPHPHRGFETVTYLLEGEV  58

Query  83   THRDSMIKKGAEGAQGKQFYRMRRGDVQFTTGGTG  117
             HRDS+   G  G        +R GDVQ+ T G+G
Sbjct  59   EHRDSL---GNHG-------VIRPGDVQWMTAGSG  83



Lambda      K        H        a         alpha
   0.326    0.140    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00016993

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425841 pfam00730, HhH-GPD, HhH-GPD superfamily base excision ...  125     3e-35


>CDD:425841 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair 
protein.  This family contains a diverse range of structurally 
related DNA repair proteins. The superfamily is called 
the HhH-GPD family after its hallmark Helix-hairpin-helix 
and Gly/Pro rich loop followed by a conserved aspartate. This 
includes endonuclease III, EC:4.2.99.18 and MutY an A/G-specific 
adenine glycosylase, both have a C terminal 4Fe-4S cluster. 
The family also includes 8-oxoguanine DNA glycosylases. 
The methyl-CPG binding protein MBD4 also contains a related 
domain that is a thymine DNA glycosylase. The family also 
includes DNA-3-methyladenine glycosylase II EC:3.2.2.21 and 
other members of the AlkA family.
Length=141

 Score = 125 bits (317),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 67/172 (39%), Gaps = 34/172 (20%)

Query  189  IALMLSSQTKDTVTAVAMQRLHTELGNGRALAEDPIVKKEEQEDIDLKSSQPLKDSTLNL  248
            ++ +LS QT D       +RL  +                                    
Sbjct  1    VSAILSQQTSDKAVNKITERLFEKFF-------------------------------PTP  29

Query  249  ENILAVSPEKLNELIRTVGFHNNKTKYIKAAAEILRDQYNSDIPSTAEELMK-LPGVGPK  307
            E++     E+L ELIR +GF+  K KY+K  A IL + Y  ++P   EEL   L GVG  
Sbjct  30   EDLADADEEELRELIRGLGFYRRKAKYLKELARILVEGYGGEVPLDEEELEALLKGVGRW  89

Query  308  MAYLCMSAAWGK-DEGIGVDVHVHRITNLWGWHKT-KTPEETRMALESWLPR  357
             A   +  A G+ D    VD HV R+    G  K   TP+E    LE   P 
Sbjct  90   TAEAVLIFALGRPDPLPVVDTHVRRVLKRLGLIKEKPTPKEVERELEELWPP  141



Lambda      K        H        a         alpha
   0.311    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00010141

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425841 pfam00730, HhH-GPD, HhH-GPD superfamily base excision ...  125     4e-35


>CDD:425841 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair 
protein.  This family contains a diverse range of structurally 
related DNA repair proteins. The superfamily is called 
the HhH-GPD family after its hallmark Helix-hairpin-helix 
and Gly/Pro rich loop followed by a conserved aspartate. This 
includes endonuclease III, EC:4.2.99.18 and MutY an A/G-specific 
adenine glycosylase, both have a C terminal 4Fe-4S cluster. 
The family also includes 8-oxoguanine DNA glycosylases. 
The methyl-CPG binding protein MBD4 also contains a related 
domain that is a thymine DNA glycosylase. The family also 
includes DNA-3-methyladenine glycosylase II EC:3.2.2.21 and 
other members of the AlkA family.
Length=141

 Score = 125 bits (317),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 67/172 (39%), Gaps = 34/172 (20%)

Query  218  IALMLSSQTKDTVTAVAMQRLHTELGNGRALAEDPIVKKEEQEDIDLKSSQPLKDSTLNL  277
            ++ +LS QT D       +RL  +                                    
Sbjct  1    VSAILSQQTSDKAVNKITERLFEKFF-------------------------------PTP  29

Query  278  ENILAVSPEKLNELIRTVGFHNNKTKYIKAAAEILRDQYNSDIPSTAEELMK-LPGVGPK  336
            E++     E+L ELIR +GF+  K KY+K  A IL + Y  ++P   EEL   L GVG  
Sbjct  30   EDLADADEEELRELIRGLGFYRRKAKYLKELARILVEGYGGEVPLDEEELEALLKGVGRW  89

Query  337  MAYLCMSAAWGK-DEGIGVDVHVHRITNLWGWHKT-KTPEETRMALESWLPR  386
             A   +  A G+ D    VD HV R+    G  K   TP+E    LE   P 
Sbjct  90   TAEAVLIFALGRPDPLPVVDTHVRRVLKRLGLIKEKPTPKEVERELEELWPP  141



Lambda      K        H        a         alpha
   0.313    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 569004184


Query= TCONS_00016994

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425841 pfam00730, HhH-GPD, HhH-GPD superfamily base excision ...  125     4e-35


>CDD:425841 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair 
protein.  This family contains a diverse range of structurally 
related DNA repair proteins. The superfamily is called 
the HhH-GPD family after its hallmark Helix-hairpin-helix 
and Gly/Pro rich loop followed by a conserved aspartate. This 
includes endonuclease III, EC:4.2.99.18 and MutY an A/G-specific 
adenine glycosylase, both have a C terminal 4Fe-4S cluster. 
The family also includes 8-oxoguanine DNA glycosylases. 
The methyl-CPG binding protein MBD4 also contains a related 
domain that is a thymine DNA glycosylase. The family also 
includes DNA-3-methyladenine glycosylase II EC:3.2.2.21 and 
other members of the AlkA family.
Length=141

 Score = 125 bits (317),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 67/172 (39%), Gaps = 34/172 (20%)

Query  218  IALMLSSQTKDTVTAVAMQRLHTELGNGRALAEDPIVKKEEQEDIDLKSSQPLKDSTLNL  277
            ++ +LS QT D       +RL  +                                    
Sbjct  1    VSAILSQQTSDKAVNKITERLFEKFF-------------------------------PTP  29

Query  278  ENILAVSPEKLNELIRTVGFHNNKTKYIKAAAEILRDQYNSDIPSTAEELMK-LPGVGPK  336
            E++     E+L ELIR +GF+  K KY+K  A IL + Y  ++P   EEL   L GVG  
Sbjct  30   EDLADADEEELRELIRGLGFYRRKAKYLKELARILVEGYGGEVPLDEEELEALLKGVGRW  89

Query  337  MAYLCMSAAWGK-DEGIGVDVHVHRITNLWGWHKT-KTPEETRMALESWLPR  386
             A   +  A G+ D    VD HV R+    G  K   TP+E    LE   P 
Sbjct  90   TAEAVLIFALGRPDPLPVVDTHVRRVLKRLGLIKEKPTPKEVERELEELWPP  141



Lambda      K        H        a         alpha
   0.313    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 569004184


Query= TCONS_00010142

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  161     3e-52


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 161 bits (409),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 60/143 (42%), Positives = 87/143 (61%), Gaps = 4/143 (3%)

Query  9    RLLRELKDYTKSPNEALLHLGPVEEDDLLHWEAVLKGVKGTPYEGGLWGLKITIPPNYPL  68
            RL +ELK+  K P   +   GPV+ D+L  W+  + G  GTPYEGG++ L +  P +YP 
Sbjct  1    RLQKELKELLKDPPPGISA-GPVD-DNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPF  58

Query  69   APPNIRFTTRISHPNISFTTGEICLTLLTTEHWSPVYTLSTTLTAIHQLLTDPRPDSPLN  128
             PP ++FTT+I HPN+  ++GE+CL +L  E WSP  TL   L +I  LL++P P+ PLN
Sbjct  59   KPPKVKFTTKIYHPNVD-SSGEVCLDILKDERWSPALTLEQVLLSIQSLLSEPNPEDPLN  117

Query  129  VDVAALLRDGDIPAWESIVRYWT  151
             + A L R  +   +E  VR + 
Sbjct  118  AEAAKLYRK-NREEFEKKVREYV  139



Lambda      K        H        a         alpha
   0.316    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00010145

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  97.5    3e-26


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 97.5 bits (243),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 47/135 (35%), Positives = 62/135 (46%), Gaps = 12/135 (9%)

Query  113  FILCILLREALFYYSHRFLHS-PFFYARIHKRHHKFTAPIALAAQYAHPIEHIVANSLPI  171
             +L +LL + LFY+ HR LH  P+ + R HK HH   AP AL A   HP+E ++   L +
Sbjct  1    VLLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLFALLVL  60

Query  172  SLPPQILGSHILTFWAFLAYELANTATVHSG--------YDFFKNKAKMHDLHHEKFNL-  222
             LP  +LG  +L F   L         +HSG                + H LHH K    
Sbjct  61   -LPLLLLGLPLLAFLLGLLLGTLWYLFIHSGLLFPLPWLLKRLLGTPRFHRLHHSKNEEY  119

Query  223  NYGSI-GLLDWLHGT  236
            N+G    L D L GT
Sbjct  120  NFGVTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.328    0.141    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00010144

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  97.5    3e-26


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 97.5 bits (243),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 47/135 (35%), Positives = 62/135 (46%), Gaps = 12/135 (9%)

Query  113  FILCILLREALFYYSHRFLHS-PFFYARIHKRHHKFTAPIALAAQYAHPIEHIVANSLPI  171
             +L +LL + LFY+ HR LH  P+ + R HK HH   AP AL A   HP+E ++   L +
Sbjct  1    VLLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLFALLVL  60

Query  172  SLPPQILGSHILTFWAFLAYELANTATVHSG--------YDFFKNKAKMHDLHHEKFNL-  222
             LP  +LG  +L F   L         +HSG                + H LHH K    
Sbjct  61   -LPLLLLGLPLLAFLLGLLLGTLWYLFIHSGLLFPLPWLLKRLLGTPRFHRLHHSKNEEY  119

Query  223  NYGSI-GLLDWLHGT  236
            N+G    L D L GT
Sbjct  120  NFGVTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.328    0.141    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00010146

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460090 pfam01161, PBP, Phosphatidylethanolamine-binding protein   60.8    1e-12


>CDD:460090 pfam01161, PBP, Phosphatidylethanolamine-binding protein.  
Length=136

 Score = 60.8 bits (148),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 38/148 (26%), Positives = 48/148 (32%), Gaps = 16/148 (11%)

Query  52   PLGVDHMEEGAGFFPALEWPSPAKIIREYLLVAEDPDGPL--PHSVIHGVYYGIPRVFTG  109
             L V +   G    P L W       + + LV  DPD P       +H V   IP   T 
Sbjct  1    TLPVKYTCGGPNTSPPLAWSGAPAGTKSFALVMIDPDAPKVGGSGWLHWVVTNIPATVTE  60

Query  110  LQHGDFQVSRTHNDSYMLEGGFKYGKNRRNTVYLPPKSIPEDGPHRYFFELIALSAPIDR  169
            L  G    +    + +                Y  P     DGPHRY F L AL  P   
Sbjct  61   LPEGAPAGAVQGLNDFG------------GAGYGGPCPPAGDGPHRYVFTLYALDVP--L  106

Query  170  SRLSDRATLREIADAIYGRVVGWGAWVG  197
               +   T  E+  A  G V+      G
Sbjct  107  LDRNWGFTKAELGVAFAGHVLALAVLAG  134



Lambda      K        H        a         alpha
   0.322    0.142    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00010147

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  97.5    3e-26


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 97.5 bits (243),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 47/135 (35%), Positives = 62/135 (46%), Gaps = 12/135 (9%)

Query  113  FILCILLREALFYYSHRFLHS-PFFYARIHKRHHKFTAPIALAAQYAHPIEHIVANSLPI  171
             +L +LL + LFY+ HR LH  P+ + R HK HH   AP AL A   HP+E ++   L +
Sbjct  1    VLLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLFALLVL  60

Query  172  SLPPQILGSHILTFWAFLAYELANTATVHSG--------YDFFKNKAKMHDLHHEKFNL-  222
             LP  +LG  +L F   L         +HSG                + H LHH K    
Sbjct  61   -LPLLLLGLPLLAFLLGLLLGTLWYLFIHSGLLFPLPWLLKRLLGTPRFHRLHHSKNEEY  119

Query  223  NYGSI-GLLDWLHGT  236
            N+G    L D L GT
Sbjct  120  NFGVTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.328    0.141    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00016995

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460090 pfam01161, PBP, Phosphatidylethanolamine-binding protein   60.8    9e-13


>CDD:460090 pfam01161, PBP, Phosphatidylethanolamine-binding protein.  
Length=136

 Score = 60.8 bits (148),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 38/148 (26%), Positives = 48/148 (32%), Gaps = 16/148 (11%)

Query  26   PLGVDHMEEGAGFFPALEWPSPAKIIREYLLVAEDPDGPL--PHSVIHGVYYGIPRVFTG  83
             L V +   G    P L W       + + LV  DPD P       +H V   IP   T 
Sbjct  1    TLPVKYTCGGPNTSPPLAWSGAPAGTKSFALVMIDPDAPKVGGSGWLHWVVTNIPATVTE  60

Query  84   LQHGDFQVSRTHNDSYMLEGGFKYGKNRRNTVYLPPKSIPEDGPHRYFFELIALSAPIDR  143
            L  G    +    + +                Y  P     DGPHRY F L AL  P   
Sbjct  61   LPEGAPAGAVQGLNDFG------------GAGYGGPCPPAGDGPHRYVFTLYALDVP--L  106

Query  144  SRLSDRATLREIADAIYGRVVGWGAWVG  171
               +   T  E+  A  G V+      G
Sbjct  107  LDRNWGFTKAELGVAFAGHVLALAVLAG  134



Lambda      K        H        a         alpha
   0.321    0.142    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00016996

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00016997

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase. This...  313     4e-109


>CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase.  This is a 
family of glycosylphosphatidylinositol-anchored beta(1-3)glucanosyltransferases. 
The active site residues in the Aspergillus 
fumigatus example are the two glutamate residues at 160 
and 261.
Length=315

 Score = 313 bits (804),  Expect = 4e-109, Method: Composition-based stats.
 Identities = 116/184 (63%), Positives = 135/184 (73%), Gaps = 5/184 (3%)

Query  21   PSIKARDDVTPITVKGNAFF--KGAERFYIRGVDYQPGGS---SDLADPIADADGCKRDI  75
             +  A     PI +KGN FF  K  E+FYI+GVDYQPGGS   S L DP+ADAD CKRDI
Sbjct  1    ATSAAFAATPPIEIKGNKFFDSKNGEQFYIKGVDYQPGGSSENSTLVDPLADADVCKRDI  60

Query  76   AKFKELGLNTIRVYSVDNSKNHDECMNALADAGIYLVLDVNTPKYSINRAKPKESYNDVY  135
              FKELG+NTIRVY+VD S NHDECM AL+DAGIY++LD+NTPK SINRA P  SYN  Y
Sbjct  61   PYFKELGINTIRVYAVDPSLNHDECMKALSDAGIYVILDLNTPKESINRADPAGSYNVDY  120

Query  136  LQYIFATVDAFAGYKNTLAFFSGNEVINDGPSSSAAPYVKAVTRDLRQYIRSRKYREIPV  195
            L+  FA +DAF  Y N L FF+GNEV ND  ++ A+PYVKA  RD++QYI   KYR IPV
Sbjct  121  LERYFAVIDAFKNYTNVLGFFAGNEVTNDASNTDASPYVKAAIRDMKQYISKHKYRTIPV  180

Query  196  GYSA  199
            GYSA
Sbjct  181  GYSA  184



Lambda      K        H        a         alpha
   0.316    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00010148

Length=820
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  215     4e-66
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  93.5    4e-22
CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  85.1    5e-20


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 215 bits (551),  Expect = 4e-66, Method: Composition-based stats.
 Identities = 89/179 (50%), Positives = 109/179 (61%), Gaps = 9/179 (5%)

Query  28   YSDSASGIDFQRWCDANTGFCFGLALPETVG---TDFVGQLVVPLDSSKGWGGVSLGGSM  84
            Y+D  +GI FQRW D+  GF FG+ALPE       +F+GQLV PL    GW GVSLGGSM
Sbjct  1    YTDPDTGITFQRWTDSTGGFTFGIALPEDATTDADEFIGQLVAPLTV--GWAGVSLGGSM  58

Query  85   TSTLLIAAWPNGNSVVSSLRKTTNYANPDVYSGGASLTEIPDGTSVNRTHLTYTFLCSGC  144
            T+ LL+ AWPNG +VV+S R  T Y +P VY+G A+LT+IP GTSVN TH T TF C GC
Sbjct  59   TNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIP-GTSVNSTHFTLTFRCQGC  117

Query  145  ILGQP--ATFDATDETYFLGWALSKTSPTTPASASSALTYHAAGFGSFEMLLGQAKSSK  201
                    +  A+     LGWA S T+PT P+S  S    H   FG F   L  A+S+ 
Sbjct  118  TSWDGGGTSGSASGGNAVLGWAQSTTAPTDPSSPDSTFGQHDN-FGQFGADLAAARSAS  175


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 93.5 bits (233),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 58/235 (25%), Positives = 91/235 (39%), Gaps = 56/235 (24%)

Query  327  AGCVLGGGTTVNAMALIYPQEADFDDKWPA-----GWKWQDVKSAAARFYERNPGSLLPS  381
            AG  +GGG++VN  A I    A  D+ W +     GW + D       + ++  G L  +
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDE-WASEFGLEGWGYDDY----LPYMDKVEGPLGVT  77

Query  382  ADGRRYDQGMYTVLSSFLS--------GLGWKSVDQHKQPNEKHKAFSYPSWSVANGIRA  433
              G            S L+         LG+      +  N  H    +       G + 
Sbjct  78   TKGIEE---------SPLNQALLKAAEELGYPVEAVPRNSNGCHY-CGFCGLGCPTGAKQ  127

Query  434  GPVRSYL-PLVQNKDNFTLRLQTTVRRLI--RTGGHVTGVEVQNASGGIELIGIRPGGKV  490
               R++L P ++   N  +       ++I    GG   GVE ++  GGI+ + I    +V
Sbjct  128  STARTWLRPALER--NLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKRL-ITAAKEV  184

Query  491  ILAAGALSTPRILFNSGIGPAKQIKTVQSGSTGITLPAQKDWINLPVGHNLKDHP  545
            ++AAGAL+TP +L  SG+G                          PVG NL+ HP
Sbjct  185  VVAAGALNTPPLLLRSGLGKNPH----------------------PVGKNLQLHP  217


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 85.1 bits (211),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 22/123 (18%)

Query  651  LQTPEDKEALTSFLQELLDDLKKASYTVQGSSSP------------------ADILAKVT  692
            L  P D  AL + L+     L  A   +    +P                  A I A  +
Sbjct  25   LSDPADLAALRAALRLARRILAAAGLVLGVELTPGPVPEVSDAAVTSDDELLAYIRAAAS  84

Query  693  SGDHFVGTAKMGPDDGRRNGTSVVDTNTKVYGTDNLYIVDASIHPDLPTGNTQAIVMIAA  752
            +  H +GT +MG D       +VVD + +V+G DNL +VDAS+ P  P+GN    +   A
Sbjct  85   TSYHPMGTCRMGADPD----DAVVDPDLRVHGVDNLRVVDASVFPSSPSGNPTLTIYALA  140

Query  753  EAA  755
            E A
Sbjct  141  ERA  143



Lambda      K        H        a         alpha
   0.313    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1040747650


Query= TCONS_00010149

Length=244
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase. This...  214     2e-69


>CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase.  This is a 
family of glycosylphosphatidylinositol-anchored beta(1-3)glucanosyltransferases. 
The active site residues in the Aspergillus 
fumigatus example are the two glutamate residues at 160 
and 261.
Length=315

 Score = 214 bits (546),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 72/122 (59%), Positives = 88/122 (72%), Gaps = 2/122 (2%)

Query  1    MAQYMNCGSDDERSDFFAFNDYSWCDPSSFKTSGWDQKVKNFTGYGLPLFLSEYGCNTNK  60
            +A Y  CG DDER+DFF  N Y WC  SSFKTSG+D + K F  Y +P+F SEYGCN   
Sbjct  194  LADYFACGDDDERADFFGINMYEWCGYSSFKTSGYDDRTKEFENYSIPVFFSEYGCNKVT  253

Query  61   -RQFQEVSSLYSTDMTGVYSGGLVYEYSQEASNYGLVEISGNNVK-ELPDFDALKTAFEK  118
             R F EVS+LYS+DMT V+SGGLVYEYS+EA+NYGLV I G++V   L DF+ LK+ + K
Sbjct  254  PRPFTEVSALYSSDMTSVFSGGLVYEYSEEANNYGLVSIDGDDVVTTLADFNNLKSEYAK  313

Query  119  TS  120
             S
Sbjct  314  IS  315



Lambda      K        H        a         alpha
   0.309    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00010150

Length=367
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395079 pfam00130, C1_1, Phorbol esters/diacylglycerol binding...  81.3    3e-20


>CDD:395079 pfam00130, C1_1, Phorbol esters/diacylglycerol binding domain 
(C1 domain).  This domain is also known as the Protein kinase 
C conserved region 1 (C1) domain.
Length=53

 Score = 81.3 bits (201),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 29/52 (56%), Gaps = 0/52 (0%)

Query  150  HNFKSQTFKIPTNCDLCGERIWGLSAKGFDCRDCGYTCHSKCQMKVPAECPG  201
            H+F  + FK PT CD CGE +WGL  +G  C  C    H +C  KVP EC  
Sbjct  1    HHFVHRNFKQPTFCDHCGEFLWGLGKQGLKCSWCKLNVHKRCHEKVPPECGC  52



Lambda      K        H        a         alpha
   0.312    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00010151

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  146     3e-42
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  109     1e-29


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 146 bits (371),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 95/168 (57%), Gaps = 9/168 (5%)

Query  123  SKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPT  182
            + IQ  A+P +L    ++++ Q+ +G+GKT AF+L AL  +D         PQAL+LAPT
Sbjct  1    TPIQAEAIPAILEG--RDVLVQAPTGSGKTLAFLLPALEALDKL----DNGPQALVLAPT  54

Query  183  RELARQILGVVQVMGQFVDGLIIGAAVPTDRDSRPKRL-ECSIVVGTPGTVGDMIKRRTF  241
            RELA QI   ++ +G+ +   +        R  + ++L    I+VGTPG + D+++ R  
Sbjct  55   RELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQERKL  114

Query  242  IPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLPRDIQVVLFSATFPE  289
            +   LK+LVLDEA  +LD  G G     +   LP+  Q++L SAT P 
Sbjct  115  L-KNLKLLVLDEAHRLLD-MGFGPDLEEILRRLPKKRQILLLSATLPR  160


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 109 bits (276),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 43/121 (36%), Positives = 64/121 (53%), Gaps = 12/121 (10%)

Query  329  DKYRTLVQLYGLLTVGSSIIFVQTRAAAQEIERRMTAEGHTVVSLTGERDPSVRDAIIDQ  388
            +K   L++L      G  +IF QT+    E E  +  EG  V  L G+     R+ I++ 
Sbjct  1    EKLEALLELLKKERGGKVLIFSQTKKTL-EAELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  389  FRRGEAKVLIATNVLARGIDVSTVSMVINYDIPELHQPNVPGRQADFQTYLHRIGRTGRF  448
            FR+G+  VL+AT+V  RG+D+  V +VINYD+P            +  +Y+ RIGR GR 
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPW-----------NPASYIQRIGRAGRA  108

Query  449  G  449
            G
Sbjct  109  G  109



Lambda      K        H        a         alpha
   0.316    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 635907720


Query= TCONS_00010152

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal. Th...  375     8e-133


>CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal.  This domain 
family is found in bacteria and eukaryotes, and is approximately 
190 amino acids in length. This family is the N terminal 
of GTP cyclohydrolase, the rate limiting enzyme in the 
synthesis of tetrahydrobiopterin.
Length=193

 Score = 375 bits (966),  Expect = 8e-133, Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 150/193 (78%), Gaps = 0/193 (0%)

Query  30   KHIVLTTYPGQSGIDPVPLVWGAPDAKSRGPVIVTRSAGMLKRRNAIGAHGGSYSIYNAL  89
             HI+LTTYPGQSGIDP+PL WGA D   RGPV+ +R    +KRRNAIGAH GSYS+Y AL
Sbjct  1    SHIILTTYPGQSGIDPIPLNWGAADPLERGPVVASRHPSSIKRRNAIGAHSGSYSVYRAL  60

Query  90   AIAAGDLDVNFRPDFRNSEPTFNFPWQPSWADKTKIVSMDPYGHDIVNQFREELEAGWDI  149
            A+A+G LD + RPD  N+EP F+   QPSW+D  KIVSMDP+GH +   F + +EAG DI
Sbjct  61   AVASGALDPDHRPDLTNTEPPFDIGPQPSWSDPEKIVSMDPWGHLVPEVFADYIEAGVDI  120

Query  150  RPTMAVTRANMKLAEIGEAVKNGQLGVDGSIVVDSSGEVRVTKVAVEPVWYLPGVAERFG  209
            RPT+AVT+A+MKL EI EAV+ G+L VDG IV++S G++ VTK AVEPVWYLPGVAERFG
Sbjct  121  RPTIAVTKAHMKLPEIDEAVRKGRLKVDGKIVLNSGGDLAVTKAAVEPVWYLPGVAERFG  180

Query  210  VDEGTLRRTLFEH  222
            + EG LRR LFE 
Sbjct  181  ISEGELRRALFED  193



Lambda      K        H        a         alpha
   0.318    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00017000

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal. Th...  375     8e-133


>CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal.  This domain 
family is found in bacteria and eukaryotes, and is approximately 
190 amino acids in length. This family is the N terminal 
of GTP cyclohydrolase, the rate limiting enzyme in the 
synthesis of tetrahydrobiopterin.
Length=193

 Score = 375 bits (966),  Expect = 8e-133, Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 150/193 (78%), Gaps = 0/193 (0%)

Query  30   KHIVLTTYPGQSGIDPVPLVWGAPDAKSRGPVIVTRSAGMLKRRNAIGAHGGSYSIYNAL  89
             HI+LTTYPGQSGIDP+PL WGA D   RGPV+ +R    +KRRNAIGAH GSYS+Y AL
Sbjct  1    SHIILTTYPGQSGIDPIPLNWGAADPLERGPVVASRHPSSIKRRNAIGAHSGSYSVYRAL  60

Query  90   AIAAGDLDVNFRPDFRNSEPTFNFPWQPSWADKTKIVSMDPYGHDIVNQFREELEAGWDI  149
            A+A+G LD + RPD  N+EP F+   QPSW+D  KIVSMDP+GH +   F + +EAG DI
Sbjct  61   AVASGALDPDHRPDLTNTEPPFDIGPQPSWSDPEKIVSMDPWGHLVPEVFADYIEAGVDI  120

Query  150  RPTMAVTRANMKLAEIGEAVKNGQLGVDGSIVVDSSGEVRVTKVAVEPVWYLPGVAERFG  209
            RPT+AVT+A+MKL EI EAV+ G+L VDG IV++S G++ VTK AVEPVWYLPGVAERFG
Sbjct  121  RPTIAVTKAHMKLPEIDEAVRKGRLKVDGKIVLNSGGDLAVTKAAVEPVWYLPGVAERFG  180

Query  210  VDEGTLRRTLFEH  222
            + EG LRR LFE 
Sbjct  181  ISEGELRRALFED  193



Lambda      K        H        a         alpha
   0.318    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00017001

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal. Th...  376     6e-132
CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II. GTP...  67.9    2e-14 


>CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal.  This domain 
family is found in bacteria and eukaryotes, and is approximately 
190 amino acids in length. This family is the N terminal 
of GTP cyclohydrolase, the rate limiting enzyme in the 
synthesis of tetrahydrobiopterin.
Length=193

 Score = 376 bits (968),  Expect = 6e-132, Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 150/193 (78%), Gaps = 0/193 (0%)

Query  30   KHIVLTTYPGQSGIDPVPLVWGAPDAKSRGPVIVTRSAGMLKRRNAIGAHGGSYSIYNAL  89
             HI+LTTYPGQSGIDP+PL WGA D   RGPV+ +R    +KRRNAIGAH GSYS+Y AL
Sbjct  1    SHIILTTYPGQSGIDPIPLNWGAADPLERGPVVASRHPSSIKRRNAIGAHSGSYSVYRAL  60

Query  90   AIAAGDLDVNFRPDFRNSEPTFNFPWQPSWADKTKIVSMDPYGHDIVNQFREELEAGWDI  149
            A+A+G LD + RPD  N+EP F+   QPSW+D  KIVSMDP+GH +   F + +EAG DI
Sbjct  61   AVASGALDPDHRPDLTNTEPPFDIGPQPSWSDPEKIVSMDPWGHLVPEVFADYIEAGVDI  120

Query  150  RPTMAVTRANMKLAEIGEAVKNGQLGVDGSIVVDSSGEVRVTKVAVEPVWYLPGVAERFG  209
            RPT+AVT+A+MKL EI EAV+ G+L VDG IV++S G++ VTK AVEPVWYLPGVAERFG
Sbjct  121  RPTIAVTKAHMKLPEIDEAVRKGRLKVDGKIVLNSGGDLAVTKAAVEPVWYLPGVAERFG  180

Query  210  VDEGTLRRTLFEH  222
            + EG LRR LFE 
Sbjct  181  ISEGELRRALFED  193


>CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II.  GTP cyclohydrolase 
II catalyzes the first committed step in the biosynthesis 
of riboflavin.
Length=123

 Score = 67.9 bits (167),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 21/137 (15%)

Query  267  RIHDECNGSDVFQSDICTCRPYLAFGIREAIREAQNGGSGVVIYFRKEGRALGEVVKYLV  326
            R+H EC   DV  S  C C   L      A+R     G GV++Y R+EGR +G + K   
Sbjct  2    RVHSECLTGDVLGSLRCDCGEQL----EAALRAIAEEGRGVLVYLRQEGRGIGLLNKLRA  57

Query  327  YNARKRGGDTADKYFTRTENIAGVRDMRFQALMPD------ILHWLGIKKIDRMLSMSNM  380
            Y  + +G DT +              + F A + D      IL  LG+KKI R+L+ +  
Sbjct  58   YALQDQGLDTVEAN----------LALGFPADLRDYGIGAQILRDLGVKKI-RLLTNNPR  106

Query  381  KHDAIVQSGIKILKRVP  397
            K   +   G+++++RVP
Sbjct  107  KIVGLEGYGLEVVERVP  123



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0759    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00010153

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  145     3e-42
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  86.9    2e-21


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 145 bits (367),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 95/168 (57%), Gaps = 9/168 (5%)

Query  123  SKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPT  182
            + IQ  A+P +L    ++++ Q+ +G+GKT AF+L AL  +D         PQAL+LAPT
Sbjct  1    TPIQAEAIPAILEG--RDVLVQAPTGSGKTLAFLLPALEALDKL----DNGPQALVLAPT  54

Query  183  RELARQILGVVQVMGQFVDGLIIGAAVPTDRDSRPKRL-ECSIVVGTPGTVGDMIKRRTF  241
            RELA QI   ++ +G+ +   +        R  + ++L    I+VGTPG + D+++ R  
Sbjct  55   RELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQERKL  114

Query  242  IPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLPRDIQVVLFSATFPE  289
            +   LK+LVLDEA  +LD  G G     +   LP+  Q++L SAT P 
Sbjct  115  L-KNLKLLVLDEAHRLLD-MGFGPDLEEILRRLPKKRQILLLSATLPR  160


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 86.9 bits (216),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 33/90 (37%), Positives = 50/90 (56%), Gaps = 1/90 (1%)

Query  329  DKYRTLVQLYGLLTVGSSIIFVQTRAAAQEIERRMTAEGHTVVSLTGERDPSVRDAIIDQ  388
            +K   L++L      G  +IF QT+    E E  +  EG  V  L G+     R+ I++ 
Sbjct  1    EKLEALLELLKKERGGKVLIFSQTKKTL-EAELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  389  FRRGEAKVLIATNVLARGIDVSTVSMVINY  418
            FR+G+  VL+AT+V  RG+D+  V +VINY
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINY  89



Lambda      K        H        a         alpha
   0.317    0.134    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 529127880


Query= TCONS_00010154

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  89.6    1e-24


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 89.6 bits (223),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 11/84 (13%)

Query  4    EGHTVVSLTGERDPSVRDAIIDQFRRGEAKVLIATNVLARGIDVSTVSMVINYDIPELHQ  63
            EG  V  L G+     R+ I++ FR+G+  VL+AT+V  RG+D+  V +VINYD+P    
Sbjct  37   EGIKVARLHGDLSQEEREEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPW---  93

Query  64   PNVPGRQADFQTYLHRIGRTGRFG  87
                    +  +Y+ RIGR GR G
Sbjct  94   --------NPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00017002

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  147     1e-43


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 147 bits (372),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 95/168 (57%), Gaps = 9/168 (5%)

Query  123  SKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPT  182
            + IQ  A+P +L    ++++ Q+ +G+GKT AF+L AL  +D         PQAL+LAPT
Sbjct  1    TPIQAEAIPAILEG--RDVLVQAPTGSGKTLAFLLPALEALDKL----DNGPQALVLAPT  54

Query  183  RELARQILGVVQVMGQFVDGLIIGAAVPTDRDSRPKRL-ECSIVVGTPGTVGDMIKRRTF  241
            RELA QI   ++ +G+ +   +        R  + ++L    I+VGTPG + D+++ R  
Sbjct  55   RELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQERKL  114

Query  242  IPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLPRDIQVVLFSATFPE  289
            +   LK+LVLDEA  +LD  G G     +   LP+  Q++L SAT P 
Sbjct  115  L-KNLKLLVLDEAHRLLD-MGFGPDLEEILRRLPKKRQILLLSATLPR  160



Lambda      K        H        a         alpha
   0.315    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00010156

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  145     2e-42
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  87.3    1e-21


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 145 bits (367),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 95/168 (57%), Gaps = 9/168 (5%)

Query  102  SKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPT  161
            + IQ  A+P +L    ++++ Q+ +G+GKT AF+L AL  +D         PQAL+LAPT
Sbjct  1    TPIQAEAIPAILEG--RDVLVQAPTGSGKTLAFLLPALEALDKL----DNGPQALVLAPT  54

Query  162  RELARQILGVVQVMGQFVDGLIIGAAVPTDRDSRPKRL-ECSIVVGTPGTVGDMIKRRTF  220
            RELA QI   ++ +G+ +   +        R  + ++L    I+VGTPG + D+++ R  
Sbjct  55   RELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQERKL  114

Query  221  IPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLPRDIQVVLFSATFPE  268
            +   LK+LVLDEA  +LD  G G     +   LP+  Q++L SAT P 
Sbjct  115  L-KNLKLLVLDEAHRLLD-MGFGPDLEEILRRLPKKRQILLLSATLPR  160


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 87.3 bits (217),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 33/90 (37%), Positives = 50/90 (56%), Gaps = 1/90 (1%)

Query  308  DKYRTLVQLYGLLTVGSSIIFVQTRAAAQEIERRMTAEGHTVVSLTGERDPSVRDAIIDQ  367
            +K   L++L      G  +IF QT+    E E  +  EG  V  L G+     R+ I++ 
Sbjct  1    EKLEALLELLKKERGGKVLIFSQTKKTL-EAELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  368  FRRGEAKVLIATNVLARGIDVSTVSMVINY  397
            FR+G+  VL+AT+V  RG+D+  V +VINY
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINY  89



Lambda      K        H        a         alpha
   0.316    0.134    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500176124


Query= TCONS_00010157

Length=316
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  144     4e-43


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 144 bits (365),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 95/168 (57%), Gaps = 9/168 (5%)

Query  7    SKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPT  66
            + IQ  A+P +L    ++++ Q+ +G+GKT AF+L AL  +D         PQAL+LAPT
Sbjct  1    TPIQAEAIPAILEG--RDVLVQAPTGSGKTLAFLLPALEALDKL----DNGPQALVLAPT  54

Query  67   RELARQILGVVQVMGQFVDGLIIGAAVPTDRDSRPKRL-ECSIVVGTPGTVGDMIKRRTF  125
            RELA QI   ++ +G+ +   +        R  + ++L    I+VGTPG + D+++ R  
Sbjct  55   RELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQERKL  114

Query  126  IPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLPRDIQVVLFSATFPE  173
            +   LK+LVLDEA  +LD  G G     +   LP+  Q++L SAT P 
Sbjct  115  L-KNLKLLVLDEAHRLLD-MGFGPDLEEILRRLPKKRQILLLSATLPR  160



Lambda      K        H        a         alpha
   0.320    0.136    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00010155

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  145     3e-43


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 145 bits (369),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 95/168 (57%), Gaps = 9/168 (5%)

Query  101  SKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPT  160
            + IQ  A+P +L    ++++ Q+ +G+GKT AF+L AL  +D         PQAL+LAPT
Sbjct  1    TPIQAEAIPAILEG--RDVLVQAPTGSGKTLAFLLPALEALDKL----DNGPQALVLAPT  54

Query  161  RELARQILGVVQVMGQFVDGLIIGAAVPTDRDSRPKRL-ECSIVVGTPGTVGDMIKRRTF  219
            RELA QI   ++ +G+ +   +        R  + ++L    I+VGTPG + D+++ R  
Sbjct  55   RELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQERKL  114

Query  220  IPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLPRDIQVVLFSATFPE  267
            +   LK+LVLDEA  +LD  G G     +   LP+  Q++L SAT P 
Sbjct  115  L-KNLKLLVLDEAHRLLD-MGFGPDLEEILRRLPKKRQILLLSATLPR  160



Lambda      K        H        a         alpha
   0.315    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00010158

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  145     2e-42
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  92.3    3e-23


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 145 bits (367),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 95/168 (57%), Gaps = 9/168 (5%)

Query  102  SKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPT  161
            + IQ  A+P +L    ++++ Q+ +G+GKT AF+L AL  +D         PQAL+LAPT
Sbjct  1    TPIQAEAIPAILEG--RDVLVQAPTGSGKTLAFLLPALEALDKL----DNGPQALVLAPT  54

Query  162  RELARQILGVVQVMGQFVDGLIIGAAVPTDRDSRPKRL-ECSIVVGTPGTVGDMIKRRTF  220
            RELA QI   ++ +G+ +   +        R  + ++L    I+VGTPG + D+++ R  
Sbjct  55   RELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQERKL  114

Query  221  IPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLPRDIQVVLFSATFPE  268
            +   LK+LVLDEA  +LD  G G     +   LP+  Q++L SAT P 
Sbjct  115  L-KNLKLLVLDEAHRLLD-MGFGPDLEEILRRLPKKRQILLLSATLPR  160


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 92.3 bits (230),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 39/115 (34%), Positives = 60/115 (52%), Gaps = 12/115 (10%)

Query  308  DKYRTLVQLYGLLTVGSSIIFVQTRAAAQEIERRMTAEGHTVVSLTGERDPSVRDAIIDQ  367
            +K   L++L      G  +IF QT+    E E  +  EG  V  L G+     R+ I++ 
Sbjct  1    EKLEALLELLKKERGGKVLIFSQTKKTL-EAELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  368  FRRGEAKVLIATNVLARGIDVSTVSMVINYVSFRCVVLDVPGRQADFQTYLHRIG  422
            FR+G+  VL+AT+V  RG+D+  V +VINY        D+P    +  +Y+ RIG
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINY--------DLPW---NPASYIQRIG  103



Lambda      K        H        a         alpha
   0.317    0.135    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00010159

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  146     2e-42
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  109     1e-29


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 146 bits (371),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 95/168 (57%), Gaps = 9/168 (5%)

Query  101  SKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPT  160
            + IQ  A+P +L    ++++ Q+ +G+GKT AF+L AL  +D         PQAL+LAPT
Sbjct  1    TPIQAEAIPAILEG--RDVLVQAPTGSGKTLAFLLPALEALDKL----DNGPQALVLAPT  54

Query  161  RELARQILGVVQVMGQFVDGLIIGAAVPTDRDSRPKRL-ECSIVVGTPGTVGDMIKRRTF  219
            RELA QI   ++ +G+ +   +        R  + ++L    I+VGTPG + D+++ R  
Sbjct  55   RELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQERKL  114

Query  220  IPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLPRDIQVVLFSATFPE  267
            +   LK+LVLDEA  +LD  G G     +   LP+  Q++L SAT P 
Sbjct  115  L-KNLKLLVLDEAHRLLD-MGFGPDLEEILRRLPKKRQILLLSATLPR  160


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 109 bits (276),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 43/121 (36%), Positives = 64/121 (53%), Gaps = 12/121 (10%)

Query  307  DKYRTLVQLYGLLTVGSSIIFVQTRAAAQEIERRMTAEGHTVVSLTGERDPSVRDAIIDQ  366
            +K   L++L      G  +IF QT+    E E  +  EG  V  L G+     R+ I++ 
Sbjct  1    EKLEALLELLKKERGGKVLIFSQTKKTL-EAELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  367  FRRGEAKVLIATNVLARGIDVSTVSMVINYDIPELHQPNVPGRQADFQTYLHRIGRTGRF  426
            FR+G+  VL+AT+V  RG+D+  V +VINYD+P            +  +Y+ RIGR GR 
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPW-----------NPASYIQRIGRAGRA  108

Query  427  G  427
            G
Sbjct  109  G  109



Lambda      K        H        a         alpha
   0.316    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00017004

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family...  277     2e-90


>CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family 32 N-terminal 
domain.  This domain corresponds to the N-terminal domain 
of glycosyl hydrolase family 32 which forms a five bladed 
beta propeller structure.
Length=308

 Score = 277 bits (711),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 125/326 (38%), Positives = 160/326 (49%), Gaps = 41/326 (13%)

Query  29   HFSPPSQFMNDPNGLFYDHKREVYHLYYQYNPSEIVAGNQHWGHATSKDLYHWTNHPIAI  88
            HF PP  +MNDPNGL Y      YHL+YQYNP   V GN+HWGHA SKDL HW + P+A+
Sbjct  1    HFQPPKGWMNDPNGLVY--YNGEYHLFYQYNPFGAVWGNKHWGHAVSKDLVHWEHLPVAL  58

Query  89   APSQPGE--WIYSGSAVMDSNNTSGFFPDQDDGVVAIYT----LATETLQTQQIAYSRDG  142
            AP +  +    +SGSAV+D            D +V IYT          Q Q +AYS+D 
Sbjct  59   APDEWYDSNGCFSGSAVVD-----------PDNLVLIYTGNVRDEGRDTQVQNLAYSKDD  107

Query  143  GYTFTKYENNPVLDID----SSQFRDPQVTWHPETQKWVMTIAYADDR---VIGFYTSPN  195
            G TFTKY NNPV+       +  FRDP+V W+ E  KW M +   D+     I  Y S +
Sbjct  108  GRTFTKYPNNPVIINLPAGYTKHFRDPKVAWY-EDGKWYMVLGAQDNDKKGKILLYKSDD  166

Query  196  LKEWTHASNFTQSGLPGT-QFECPNLVKFSVDDCDDSEDPTKWVLFISVNPGAPLGGSGT  254
            LK WT       S   G   +ECP+L      D     +  K VL  S    +       
Sbjct  167  LKNWTFVGELLHSNDGGGYMWECPDLFPLDGKD----GEKWKHVLKFSPQGLSYDNIYQD  222

Query  255  YYVVGSFN--GTHFTSESPRETLYDFAKDNYASQWYSGIPEDEPPVSIGWASNWNYTQ-Q  311
            YY +GSF+  G  FT +     L D+  D YA Q ++    D   + IGW  NW+     
Sbjct  223  YYFIGSFDLDGDKFTPDGEFLRL-DYGFDFYAPQTFND--PDGRRILIGWMGNWDSEAND  279

Query  312  VPTGPLEGWRSSMSLPKVHTLTKVDG  337
             PT   +GW  +MSLP+  TL    G
Sbjct  280  YPT---KGWAGAMSLPRELTLKDTGG  302



Lambda      K        H        a         alpha
   0.316    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00017005

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal. Th...  376     6e-132
CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II. GTP...  67.9    2e-14 


>CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal.  This domain 
family is found in bacteria and eukaryotes, and is approximately 
190 amino acids in length. This family is the N terminal 
of GTP cyclohydrolase, the rate limiting enzyme in the 
synthesis of tetrahydrobiopterin.
Length=193

 Score = 376 bits (968),  Expect = 6e-132, Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 150/193 (78%), Gaps = 0/193 (0%)

Query  30   KHIVLTTYPGQSGIDPVPLVWGAPDAKSRGPVIVTRSAGMLKRRNAIGAHGGSYSIYNAL  89
             HI+LTTYPGQSGIDP+PL WGA D   RGPV+ +R    +KRRNAIGAH GSYS+Y AL
Sbjct  1    SHIILTTYPGQSGIDPIPLNWGAADPLERGPVVASRHPSSIKRRNAIGAHSGSYSVYRAL  60

Query  90   AIAAGDLDVNFRPDFRNSEPTFNFPWQPSWADKTKIVSMDPYGHDIVNQFREELEAGWDI  149
            A+A+G LD + RPD  N+EP F+   QPSW+D  KIVSMDP+GH +   F + +EAG DI
Sbjct  61   AVASGALDPDHRPDLTNTEPPFDIGPQPSWSDPEKIVSMDPWGHLVPEVFADYIEAGVDI  120

Query  150  RPTMAVTRANMKLAEIGEAVKNGQLGVDGSIVVDSSGEVRVTKVAVEPVWYLPGVAERFG  209
            RPT+AVT+A+MKL EI EAV+ G+L VDG IV++S G++ VTK AVEPVWYLPGVAERFG
Sbjct  121  RPTIAVTKAHMKLPEIDEAVRKGRLKVDGKIVLNSGGDLAVTKAAVEPVWYLPGVAERFG  180

Query  210  VDEGTLRRTLFEH  222
            + EG LRR LFE 
Sbjct  181  ISEGELRRALFED  193


>CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II.  GTP cyclohydrolase 
II catalyzes the first committed step in the biosynthesis 
of riboflavin.
Length=123

 Score = 67.9 bits (167),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 21/137 (15%)

Query  267  RIHDECNGSDVFQSDICTCRPYLAFGIREAIREAQNGGSGVVIYFRKEGRALGEVVKYLV  326
            R+H EC   DV  S  C C   L      A+R     G GV++Y R+EGR +G + K   
Sbjct  2    RVHSECLTGDVLGSLRCDCGEQL----EAALRAIAEEGRGVLVYLRQEGRGIGLLNKLRA  57

Query  327  YNARKRGGDTADKYFTRTENIAGVRDMRFQALMPD------ILHWLGIKKIDRMLSMSNM  380
            Y  + +G DT +              + F A + D      IL  LG+KKI R+L+ +  
Sbjct  58   YALQDQGLDTVEAN----------LALGFPADLRDYGIGAQILRDLGVKKI-RLLTNNPR  106

Query  381  KHDAIVQSGIKILKRVP  397
            K   +   G+++++RVP
Sbjct  107  KIVGLEGYGLEVVERVP  123



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00010160

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal. Th...  376     6e-132
CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II. GTP...  67.9    2e-14 


>CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal.  This domain 
family is found in bacteria and eukaryotes, and is approximately 
190 amino acids in length. This family is the N terminal 
of GTP cyclohydrolase, the rate limiting enzyme in the 
synthesis of tetrahydrobiopterin.
Length=193

 Score = 376 bits (968),  Expect = 6e-132, Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 150/193 (78%), Gaps = 0/193 (0%)

Query  30   KHIVLTTYPGQSGIDPVPLVWGAPDAKSRGPVIVTRSAGMLKRRNAIGAHGGSYSIYNAL  89
             HI+LTTYPGQSGIDP+PL WGA D   RGPV+ +R    +KRRNAIGAH GSYS+Y AL
Sbjct  1    SHIILTTYPGQSGIDPIPLNWGAADPLERGPVVASRHPSSIKRRNAIGAHSGSYSVYRAL  60

Query  90   AIAAGDLDVNFRPDFRNSEPTFNFPWQPSWADKTKIVSMDPYGHDIVNQFREELEAGWDI  149
            A+A+G LD + RPD  N+EP F+   QPSW+D  KIVSMDP+GH +   F + +EAG DI
Sbjct  61   AVASGALDPDHRPDLTNTEPPFDIGPQPSWSDPEKIVSMDPWGHLVPEVFADYIEAGVDI  120

Query  150  RPTMAVTRANMKLAEIGEAVKNGQLGVDGSIVVDSSGEVRVTKVAVEPVWYLPGVAERFG  209
            RPT+AVT+A+MKL EI EAV+ G+L VDG IV++S G++ VTK AVEPVWYLPGVAERFG
Sbjct  121  RPTIAVTKAHMKLPEIDEAVRKGRLKVDGKIVLNSGGDLAVTKAAVEPVWYLPGVAERFG  180

Query  210  VDEGTLRRTLFEH  222
            + EG LRR LFE 
Sbjct  181  ISEGELRRALFED  193


>CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II.  GTP cyclohydrolase 
II catalyzes the first committed step in the biosynthesis 
of riboflavin.
Length=123

 Score = 67.9 bits (167),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 21/137 (15%)

Query  267  RIHDECNGSDVFQSDICTCRPYLAFGIREAIREAQNGGSGVVIYFRKEGRALGEVVKYLV  326
            R+H EC   DV  S  C C   L      A+R     G GV++Y R+EGR +G + K   
Sbjct  2    RVHSECLTGDVLGSLRCDCGEQL----EAALRAIAEEGRGVLVYLRQEGRGIGLLNKLRA  57

Query  327  YNARKRGGDTADKYFTRTENIAGVRDMRFQALMPD------ILHWLGIKKIDRMLSMSNM  380
            Y  + +G DT +              + F A + D      IL  LG+KKI R+L+ +  
Sbjct  58   YALQDQGLDTVEAN----------LALGFPADLRDYGIGAQILRDLGVKKI-RLLTNNPR  106

Query  381  KHDAIVQSGIKILKRVP  397
            K   +   G+++++RVP
Sbjct  107  KIVGLEGYGLEVVERVP  123



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00017006

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal. Th...  376     6e-132
CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II. GTP...  67.9    2e-14 


>CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal.  This domain 
family is found in bacteria and eukaryotes, and is approximately 
190 amino acids in length. This family is the N terminal 
of GTP cyclohydrolase, the rate limiting enzyme in the 
synthesis of tetrahydrobiopterin.
Length=193

 Score = 376 bits (968),  Expect = 6e-132, Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 150/193 (78%), Gaps = 0/193 (0%)

Query  30   KHIVLTTYPGQSGIDPVPLVWGAPDAKSRGPVIVTRSAGMLKRRNAIGAHGGSYSIYNAL  89
             HI+LTTYPGQSGIDP+PL WGA D   RGPV+ +R    +KRRNAIGAH GSYS+Y AL
Sbjct  1    SHIILTTYPGQSGIDPIPLNWGAADPLERGPVVASRHPSSIKRRNAIGAHSGSYSVYRAL  60

Query  90   AIAAGDLDVNFRPDFRNSEPTFNFPWQPSWADKTKIVSMDPYGHDIVNQFREELEAGWDI  149
            A+A+G LD + RPD  N+EP F+   QPSW+D  KIVSMDP+GH +   F + +EAG DI
Sbjct  61   AVASGALDPDHRPDLTNTEPPFDIGPQPSWSDPEKIVSMDPWGHLVPEVFADYIEAGVDI  120

Query  150  RPTMAVTRANMKLAEIGEAVKNGQLGVDGSIVVDSSGEVRVTKVAVEPVWYLPGVAERFG  209
            RPT+AVT+A+MKL EI EAV+ G+L VDG IV++S G++ VTK AVEPVWYLPGVAERFG
Sbjct  121  RPTIAVTKAHMKLPEIDEAVRKGRLKVDGKIVLNSGGDLAVTKAAVEPVWYLPGVAERFG  180

Query  210  VDEGTLRRTLFEH  222
            + EG LRR LFE 
Sbjct  181  ISEGELRRALFED  193


>CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II.  GTP cyclohydrolase 
II catalyzes the first committed step in the biosynthesis 
of riboflavin.
Length=123

 Score = 67.9 bits (167),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 21/137 (15%)

Query  267  RIHDECNGSDVFQSDICTCRPYLAFGIREAIREAQNGGSGVVIYFRKEGRALGEVVKYLV  326
            R+H EC   DV  S  C C   L      A+R     G GV++Y R+EGR +G + K   
Sbjct  2    RVHSECLTGDVLGSLRCDCGEQL----EAALRAIAEEGRGVLVYLRQEGRGIGLLNKLRA  57

Query  327  YNARKRGGDTADKYFTRTENIAGVRDMRFQALMPD------ILHWLGIKKIDRMLSMSNM  380
            Y  + +G DT +              + F A + D      IL  LG+KKI R+L+ +  
Sbjct  58   YALQDQGLDTVEAN----------LALGFPADLRDYGIGAQILRDLGVKKI-RLLTNNPR  106

Query  381  KHDAIVQSGIKILKRVP  397
            K   +   G+++++RVP
Sbjct  107  KIVGLEGYGLEVVERVP  123



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00010161

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal. Th...  376     6e-132
CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II. GTP...  67.9    2e-14 


>CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal.  This domain 
family is found in bacteria and eukaryotes, and is approximately 
190 amino acids in length. This family is the N terminal 
of GTP cyclohydrolase, the rate limiting enzyme in the 
synthesis of tetrahydrobiopterin.
Length=193

 Score = 376 bits (968),  Expect = 6e-132, Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 150/193 (78%), Gaps = 0/193 (0%)

Query  30   KHIVLTTYPGQSGIDPVPLVWGAPDAKSRGPVIVTRSAGMLKRRNAIGAHGGSYSIYNAL  89
             HI+LTTYPGQSGIDP+PL WGA D   RGPV+ +R    +KRRNAIGAH GSYS+Y AL
Sbjct  1    SHIILTTYPGQSGIDPIPLNWGAADPLERGPVVASRHPSSIKRRNAIGAHSGSYSVYRAL  60

Query  90   AIAAGDLDVNFRPDFRNSEPTFNFPWQPSWADKTKIVSMDPYGHDIVNQFREELEAGWDI  149
            A+A+G LD + RPD  N+EP F+   QPSW+D  KIVSMDP+GH +   F + +EAG DI
Sbjct  61   AVASGALDPDHRPDLTNTEPPFDIGPQPSWSDPEKIVSMDPWGHLVPEVFADYIEAGVDI  120

Query  150  RPTMAVTRANMKLAEIGEAVKNGQLGVDGSIVVDSSGEVRVTKVAVEPVWYLPGVAERFG  209
            RPT+AVT+A+MKL EI EAV+ G+L VDG IV++S G++ VTK AVEPVWYLPGVAERFG
Sbjct  121  RPTIAVTKAHMKLPEIDEAVRKGRLKVDGKIVLNSGGDLAVTKAAVEPVWYLPGVAERFG  180

Query  210  VDEGTLRRTLFEH  222
            + EG LRR LFE 
Sbjct  181  ISEGELRRALFED  193


>CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II.  GTP cyclohydrolase 
II catalyzes the first committed step in the biosynthesis 
of riboflavin.
Length=123

 Score = 67.9 bits (167),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 21/137 (15%)

Query  267  RIHDECNGSDVFQSDICTCRPYLAFGIREAIREAQNGGSGVVIYFRKEGRALGEVVKYLV  326
            R+H EC   DV  S  C C   L      A+R     G GV++Y R+EGR +G + K   
Sbjct  2    RVHSECLTGDVLGSLRCDCGEQL----EAALRAIAEEGRGVLVYLRQEGRGIGLLNKLRA  57

Query  327  YNARKRGGDTADKYFTRTENIAGVRDMRFQALMPD------ILHWLGIKKIDRMLSMSNM  380
            Y  + +G DT +              + F A + D      IL  LG+KKI R+L+ +  
Sbjct  58   YALQDQGLDTVEAN----------LALGFPADLRDYGIGAQILRDLGVKKI-RLLTNNPR  106

Query  381  KHDAIVQSGIKILKRVP  397
            K   +   G+++++RVP
Sbjct  107  KIVGLEGYGLEVVERVP  123



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00010162

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal. Th...  376     6e-132
CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II. GTP...  67.9    2e-14 


>CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal.  This domain 
family is found in bacteria and eukaryotes, and is approximately 
190 amino acids in length. This family is the N terminal 
of GTP cyclohydrolase, the rate limiting enzyme in the 
synthesis of tetrahydrobiopterin.
Length=193

 Score = 376 bits (968),  Expect = 6e-132, Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 150/193 (78%), Gaps = 0/193 (0%)

Query  30   KHIVLTTYPGQSGIDPVPLVWGAPDAKSRGPVIVTRSAGMLKRRNAIGAHGGSYSIYNAL  89
             HI+LTTYPGQSGIDP+PL WGA D   RGPV+ +R    +KRRNAIGAH GSYS+Y AL
Sbjct  1    SHIILTTYPGQSGIDPIPLNWGAADPLERGPVVASRHPSSIKRRNAIGAHSGSYSVYRAL  60

Query  90   AIAAGDLDVNFRPDFRNSEPTFNFPWQPSWADKTKIVSMDPYGHDIVNQFREELEAGWDI  149
            A+A+G LD + RPD  N+EP F+   QPSW+D  KIVSMDP+GH +   F + +EAG DI
Sbjct  61   AVASGALDPDHRPDLTNTEPPFDIGPQPSWSDPEKIVSMDPWGHLVPEVFADYIEAGVDI  120

Query  150  RPTMAVTRANMKLAEIGEAVKNGQLGVDGSIVVDSSGEVRVTKVAVEPVWYLPGVAERFG  209
            RPT+AVT+A+MKL EI EAV+ G+L VDG IV++S G++ VTK AVEPVWYLPGVAERFG
Sbjct  121  RPTIAVTKAHMKLPEIDEAVRKGRLKVDGKIVLNSGGDLAVTKAAVEPVWYLPGVAERFG  180

Query  210  VDEGTLRRTLFEH  222
            + EG LRR LFE 
Sbjct  181  ISEGELRRALFED  193


>CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II.  GTP cyclohydrolase 
II catalyzes the first committed step in the biosynthesis 
of riboflavin.
Length=123

 Score = 67.9 bits (167),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 21/137 (15%)

Query  267  RIHDECNGSDVFQSDICTCRPYLAFGIREAIREAQNGGSGVVIYFRKEGRALGEVVKYLV  326
            R+H EC   DV  S  C C   L      A+R     G GV++Y R+EGR +G + K   
Sbjct  2    RVHSECLTGDVLGSLRCDCGEQL----EAALRAIAEEGRGVLVYLRQEGRGIGLLNKLRA  57

Query  327  YNARKRGGDTADKYFTRTENIAGVRDMRFQALMPD------ILHWLGIKKIDRMLSMSNM  380
            Y  + +G DT +              + F A + D      IL  LG+KKI R+L+ +  
Sbjct  58   YALQDQGLDTVEAN----------LALGFPADLRDYGIGAQILRDLGVKKI-RLLTNNPR  106

Query  381  KHDAIVQSGIKILKRVP  397
            K   +   G+++++RVP
Sbjct  107  KIVGLEGYGLEVVERVP  123



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00010163

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal. Th...  376     6e-132
CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II. GTP...  67.9    2e-14 


>CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal.  This domain 
family is found in bacteria and eukaryotes, and is approximately 
190 amino acids in length. This family is the N terminal 
of GTP cyclohydrolase, the rate limiting enzyme in the 
synthesis of tetrahydrobiopterin.
Length=193

 Score = 376 bits (968),  Expect = 6e-132, Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 150/193 (78%), Gaps = 0/193 (0%)

Query  30   KHIVLTTYPGQSGIDPVPLVWGAPDAKSRGPVIVTRSAGMLKRRNAIGAHGGSYSIYNAL  89
             HI+LTTYPGQSGIDP+PL WGA D   RGPV+ +R    +KRRNAIGAH GSYS+Y AL
Sbjct  1    SHIILTTYPGQSGIDPIPLNWGAADPLERGPVVASRHPSSIKRRNAIGAHSGSYSVYRAL  60

Query  90   AIAAGDLDVNFRPDFRNSEPTFNFPWQPSWADKTKIVSMDPYGHDIVNQFREELEAGWDI  149
            A+A+G LD + RPD  N+EP F+   QPSW+D  KIVSMDP+GH +   F + +EAG DI
Sbjct  61   AVASGALDPDHRPDLTNTEPPFDIGPQPSWSDPEKIVSMDPWGHLVPEVFADYIEAGVDI  120

Query  150  RPTMAVTRANMKLAEIGEAVKNGQLGVDGSIVVDSSGEVRVTKVAVEPVWYLPGVAERFG  209
            RPT+AVT+A+MKL EI EAV+ G+L VDG IV++S G++ VTK AVEPVWYLPGVAERFG
Sbjct  121  RPTIAVTKAHMKLPEIDEAVRKGRLKVDGKIVLNSGGDLAVTKAAVEPVWYLPGVAERFG  180

Query  210  VDEGTLRRTLFEH  222
            + EG LRR LFE 
Sbjct  181  ISEGELRRALFED  193


>CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II.  GTP cyclohydrolase 
II catalyzes the first committed step in the biosynthesis 
of riboflavin.
Length=123

 Score = 67.9 bits (167),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 21/137 (15%)

Query  267  RIHDECNGSDVFQSDICTCRPYLAFGIREAIREAQNGGSGVVIYFRKEGRALGEVVKYLV  326
            R+H EC   DV  S  C C   L      A+R     G GV++Y R+EGR +G + K   
Sbjct  2    RVHSECLTGDVLGSLRCDCGEQL----EAALRAIAEEGRGVLVYLRQEGRGIGLLNKLRA  57

Query  327  YNARKRGGDTADKYFTRTENIAGVRDMRFQALMPD------ILHWLGIKKIDRMLSMSNM  380
            Y  + +G DT +              + F A + D      IL  LG+KKI R+L+ +  
Sbjct  58   YALQDQGLDTVEAN----------LALGFPADLRDYGIGAQILRDLGVKKI-RLLTNNPR  106

Query  381  KHDAIVQSGIKILKRVP  397
            K   +   G+++++RVP
Sbjct  107  KIVGLEGYGLEVVERVP  123



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00017007

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal. Th...  306     1e-106


>CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal.  This domain 
family is found in bacteria and eukaryotes, and is approximately 
190 amino acids in length. This family is the N terminal 
of GTP cyclohydrolase, the rate limiting enzyme in the 
synthesis of tetrahydrobiopterin.
Length=193

 Score = 306 bits (787),  Expect = 1e-106, Method: Composition-based stats.
 Identities = 99/153 (65%), Positives = 121/153 (79%), Gaps = 0/153 (0%)

Query  2    LKRRNAIGAHGGSYSIYNALAIAAGDLDVNFRPDFRNSEPTFNFPWQPSWADKTKIVSMD  61
            +KRRNAIGAH GSYS+Y ALA+A+G LD + RPD  N+EP F+   QPSW+D  KIVSMD
Sbjct  41   IKRRNAIGAHSGSYSVYRALAVASGALDPDHRPDLTNTEPPFDIGPQPSWSDPEKIVSMD  100

Query  62   PYGHDIVNQFREELEAGWDIRPTMAVTRANMKLAEIGEAVKNGQLGVDGSIVVDSSGEVR  121
            P+GH +   F + +EAG DIRPT+AVT+A+MKL EI EAV+ G+L VDG IV++S G++ 
Sbjct  101  PWGHLVPEVFADYIEAGVDIRPTIAVTKAHMKLPEIDEAVRKGRLKVDGKIVLNSGGDLA  160

Query  122  VTKVAVEPVWYLPGVAERFGVDEGTLRRTLFEH  154
            VTK AVEPVWYLPGVAERFG+ EG LRR LFE 
Sbjct  161  VTKAAVEPVWYLPGVAERFGISEGELRRALFED  193



Lambda      K        H        a         alpha
   0.320    0.139    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00010164

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family...  277     2e-90


>CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family 32 N-terminal 
domain.  This domain corresponds to the N-terminal domain 
of glycosyl hydrolase family 32 which forms a five bladed 
beta propeller structure.
Length=308

 Score = 277 bits (711),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 125/326 (38%), Positives = 160/326 (49%), Gaps = 41/326 (13%)

Query  29   HFSPPSQFMNDPNGLFYDHKREVYHLYYQYNPSEIVAGNQHWGHATSKDLYHWTNHPIAI  88
            HF PP  +MNDPNGL Y      YHL+YQYNP   V GN+HWGHA SKDL HW + P+A+
Sbjct  1    HFQPPKGWMNDPNGLVY--YNGEYHLFYQYNPFGAVWGNKHWGHAVSKDLVHWEHLPVAL  58

Query  89   APSQPGE--WIYSGSAVMDSNNTSGFFPDQDDGVVAIYT----LATETLQTQQIAYSRDG  142
            AP +  +    +SGSAV+D            D +V IYT          Q Q +AYS+D 
Sbjct  59   APDEWYDSNGCFSGSAVVD-----------PDNLVLIYTGNVRDEGRDTQVQNLAYSKDD  107

Query  143  GYTFTKYENNPVLDID----SSQFRDPQVTWHPETQKWVMTIAYADDR---VIGFYTSPN  195
            G TFTKY NNPV+       +  FRDP+V W+ E  KW M +   D+     I  Y S +
Sbjct  108  GRTFTKYPNNPVIINLPAGYTKHFRDPKVAWY-EDGKWYMVLGAQDNDKKGKILLYKSDD  166

Query  196  LKEWTHASNFTQSGLPGT-QFECPNLVKFSVDDCDDSEDPTKWVLFISVNPGAPLGGSGT  254
            LK WT       S   G   +ECP+L      D     +  K VL  S    +       
Sbjct  167  LKNWTFVGELLHSNDGGGYMWECPDLFPLDGKD----GEKWKHVLKFSPQGLSYDNIYQD  222

Query  255  YYVVGSFN--GTHFTSESPRETLYDFAKDNYASQWYSGIPEDEPPVSIGWASNWNYTQ-Q  311
            YY +GSF+  G  FT +     L D+  D YA Q ++    D   + IGW  NW+     
Sbjct  223  YYFIGSFDLDGDKFTPDGEFLRL-DYGFDFYAPQTFND--PDGRRILIGWMGNWDSEAND  279

Query  312  VPTGPLEGWRSSMSLPKVHTLTKVDG  337
             PT   +GW  +MSLP+  TL    G
Sbjct  280  YPT---KGWAGAMSLPRELTLKDTGG  302



Lambda      K        H        a         alpha
   0.316    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00010165

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal. Th...  376     6e-132
CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II. GTP...  67.9    2e-14 


>CDD:432579 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal.  This domain 
family is found in bacteria and eukaryotes, and is approximately 
190 amino acids in length. This family is the N terminal 
of GTP cyclohydrolase, the rate limiting enzyme in the 
synthesis of tetrahydrobiopterin.
Length=193

 Score = 376 bits (968),  Expect = 6e-132, Method: Composition-based stats.
 Identities = 124/193 (64%), Positives = 150/193 (78%), Gaps = 0/193 (0%)

Query  30   KHIVLTTYPGQSGIDPVPLVWGAPDAKSRGPVIVTRSAGMLKRRNAIGAHGGSYSIYNAL  89
             HI+LTTYPGQSGIDP+PL WGA D   RGPV+ +R    +KRRNAIGAH GSYS+Y AL
Sbjct  1    SHIILTTYPGQSGIDPIPLNWGAADPLERGPVVASRHPSSIKRRNAIGAHSGSYSVYRAL  60

Query  90   AIAAGDLDVNFRPDFRNSEPTFNFPWQPSWADKTKIVSMDPYGHDIVNQFREELEAGWDI  149
            A+A+G LD + RPD  N+EP F+   QPSW+D  KIVSMDP+GH +   F + +EAG DI
Sbjct  61   AVASGALDPDHRPDLTNTEPPFDIGPQPSWSDPEKIVSMDPWGHLVPEVFADYIEAGVDI  120

Query  150  RPTMAVTRANMKLAEIGEAVKNGQLGVDGSIVVDSSGEVRVTKVAVEPVWYLPGVAERFG  209
            RPT+AVT+A+MKL EI EAV+ G+L VDG IV++S G++ VTK AVEPVWYLPGVAERFG
Sbjct  121  RPTIAVTKAHMKLPEIDEAVRKGRLKVDGKIVLNSGGDLAVTKAAVEPVWYLPGVAERFG  180

Query  210  VDEGTLRRTLFEH  222
            + EG LRR LFE 
Sbjct  181  ISEGELRRALFED  193


>CDD:460000 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II.  GTP cyclohydrolase 
II catalyzes the first committed step in the biosynthesis 
of riboflavin.
Length=123

 Score = 67.9 bits (167),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 21/137 (15%)

Query  267  RIHDECNGSDVFQSDICTCRPYLAFGIREAIREAQNGGSGVVIYFRKEGRALGEVVKYLV  326
            R+H EC   DV  S  C C   L      A+R     G GV++Y R+EGR +G + K   
Sbjct  2    RVHSECLTGDVLGSLRCDCGEQL----EAALRAIAEEGRGVLVYLRQEGRGIGLLNKLRA  57

Query  327  YNARKRGGDTADKYFTRTENIAGVRDMRFQALMPD------ILHWLGIKKIDRMLSMSNM  380
            Y  + +G DT +              + F A + D      IL  LG+KKI R+L+ +  
Sbjct  58   YALQDQGLDTVEAN----------LALGFPADLRDYGIGAQILRDLGVKKI-RLLTNNPR  106

Query  381  KHDAIVQSGIKILKRVP  397
            K   +   G+++++RVP
Sbjct  107  KIVGLEGYGLEVVERVP  123



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00017008

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00010166

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family...  277     2e-90


>CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family 32 N-terminal 
domain.  This domain corresponds to the N-terminal domain 
of glycosyl hydrolase family 32 which forms a five bladed 
beta propeller structure.
Length=308

 Score = 277 bits (711),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 125/326 (38%), Positives = 160/326 (49%), Gaps = 41/326 (13%)

Query  29   HFSPPSQFMNDPNGLFYDHKREVYHLYYQYNPSEIVAGNQHWGHATSKDLYHWTNHPIAI  88
            HF PP  +MNDPNGL Y      YHL+YQYNP   V GN+HWGHA SKDL HW + P+A+
Sbjct  1    HFQPPKGWMNDPNGLVY--YNGEYHLFYQYNPFGAVWGNKHWGHAVSKDLVHWEHLPVAL  58

Query  89   APSQPGE--WIYSGSAVMDSNNTSGFFPDQDDGVVAIYT----LATETLQTQQIAYSRDG  142
            AP +  +    +SGSAV+D            D +V IYT          Q Q +AYS+D 
Sbjct  59   APDEWYDSNGCFSGSAVVD-----------PDNLVLIYTGNVRDEGRDTQVQNLAYSKDD  107

Query  143  GYTFTKYENNPVLDID----SSQFRDPQVTWHPETQKWVMTIAYADDR---VIGFYTSPN  195
            G TFTKY NNPV+       +  FRDP+V W+ E  KW M +   D+     I  Y S +
Sbjct  108  GRTFTKYPNNPVIINLPAGYTKHFRDPKVAWY-EDGKWYMVLGAQDNDKKGKILLYKSDD  166

Query  196  LKEWTHASNFTQSGLPGT-QFECPNLVKFSVDDCDDSEDPTKWVLFISVNPGAPLGGSGT  254
            LK WT       S   G   +ECP+L      D     +  K VL  S    +       
Sbjct  167  LKNWTFVGELLHSNDGGGYMWECPDLFPLDGKD----GEKWKHVLKFSPQGLSYDNIYQD  222

Query  255  YYVVGSFN--GTHFTSESPRETLYDFAKDNYASQWYSGIPEDEPPVSIGWASNWNYTQ-Q  311
            YY +GSF+  G  FT +     L D+  D YA Q ++    D   + IGW  NW+     
Sbjct  223  YYFIGSFDLDGDKFTPDGEFLRL-DYGFDFYAPQTFND--PDGRRILIGWMGNWDSEAND  279

Query  312  VPTGPLEGWRSSMSLPKVHTLTKVDG  337
             PT   +GW  +MSLP+  TL    G
Sbjct  280  YPT---KGWAGAMSLPRELTLKDTGG  302



Lambda      K        H        a         alpha
   0.316    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00017010

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family...  277     2e-90


>CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family 32 N-terminal 
domain.  This domain corresponds to the N-terminal domain 
of glycosyl hydrolase family 32 which forms a five bladed 
beta propeller structure.
Length=308

 Score = 277 bits (711),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 125/326 (38%), Positives = 160/326 (49%), Gaps = 41/326 (13%)

Query  29   HFSPPSQFMNDPNGLFYDHKREVYHLYYQYNPSEIVAGNQHWGHATSKDLYHWTNHPIAI  88
            HF PP  +MNDPNGL Y      YHL+YQYNP   V GN+HWGHA SKDL HW + P+A+
Sbjct  1    HFQPPKGWMNDPNGLVY--YNGEYHLFYQYNPFGAVWGNKHWGHAVSKDLVHWEHLPVAL  58

Query  89   APSQPGE--WIYSGSAVMDSNNTSGFFPDQDDGVVAIYT----LATETLQTQQIAYSRDG  142
            AP +  +    +SGSAV+D            D +V IYT          Q Q +AYS+D 
Sbjct  59   APDEWYDSNGCFSGSAVVD-----------PDNLVLIYTGNVRDEGRDTQVQNLAYSKDD  107

Query  143  GYTFTKYENNPVLDID----SSQFRDPQVTWHPETQKWVMTIAYADDR---VIGFYTSPN  195
            G TFTKY NNPV+       +  FRDP+V W+ E  KW M +   D+     I  Y S +
Sbjct  108  GRTFTKYPNNPVIINLPAGYTKHFRDPKVAWY-EDGKWYMVLGAQDNDKKGKILLYKSDD  166

Query  196  LKEWTHASNFTQSGLPGT-QFECPNLVKFSVDDCDDSEDPTKWVLFISVNPGAPLGGSGT  254
            LK WT       S   G   +ECP+L      D     +  K VL  S    +       
Sbjct  167  LKNWTFVGELLHSNDGGGYMWECPDLFPLDGKD----GEKWKHVLKFSPQGLSYDNIYQD  222

Query  255  YYVVGSFN--GTHFTSESPRETLYDFAKDNYASQWYSGIPEDEPPVSIGWASNWNYTQ-Q  311
            YY +GSF+  G  FT +     L D+  D YA Q ++    D   + IGW  NW+     
Sbjct  223  YYFIGSFDLDGDKFTPDGEFLRL-DYGFDFYAPQTFND--PDGRRILIGWMGNWDSEAND  279

Query  312  VPTGPLEGWRSSMSLPKVHTLTKVDG  337
             PT   +GW  +MSLP+  TL    G
Sbjct  280  YPT---KGWAGAMSLPRELTLKDTGG  302



Lambda      K        H        a         alpha
   0.316    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00017011

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family...  277     2e-90


>CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family 32 N-terminal 
domain.  This domain corresponds to the N-terminal domain 
of glycosyl hydrolase family 32 which forms a five bladed 
beta propeller structure.
Length=308

 Score = 277 bits (711),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 125/326 (38%), Positives = 160/326 (49%), Gaps = 41/326 (13%)

Query  29   HFSPPSQFMNDPNGLFYDHKREVYHLYYQYNPSEIVAGNQHWGHATSKDLYHWTNHPIAI  88
            HF PP  +MNDPNGL Y      YHL+YQYNP   V GN+HWGHA SKDL HW + P+A+
Sbjct  1    HFQPPKGWMNDPNGLVY--YNGEYHLFYQYNPFGAVWGNKHWGHAVSKDLVHWEHLPVAL  58

Query  89   APSQPGE--WIYSGSAVMDSNNTSGFFPDQDDGVVAIYT----LATETLQTQQIAYSRDG  142
            AP +  +    +SGSAV+D            D +V IYT          Q Q +AYS+D 
Sbjct  59   APDEWYDSNGCFSGSAVVD-----------PDNLVLIYTGNVRDEGRDTQVQNLAYSKDD  107

Query  143  GYTFTKYENNPVLDID----SSQFRDPQVTWHPETQKWVMTIAYADDR---VIGFYTSPN  195
            G TFTKY NNPV+       +  FRDP+V W+ E  KW M +   D+     I  Y S +
Sbjct  108  GRTFTKYPNNPVIINLPAGYTKHFRDPKVAWY-EDGKWYMVLGAQDNDKKGKILLYKSDD  166

Query  196  LKEWTHASNFTQSGLPGT-QFECPNLVKFSVDDCDDSEDPTKWVLFISVNPGAPLGGSGT  254
            LK WT       S   G   +ECP+L      D     +  K VL  S    +       
Sbjct  167  LKNWTFVGELLHSNDGGGYMWECPDLFPLDGKD----GEKWKHVLKFSPQGLSYDNIYQD  222

Query  255  YYVVGSFN--GTHFTSESPRETLYDFAKDNYASQWYSGIPEDEPPVSIGWASNWNYTQ-Q  311
            YY +GSF+  G  FT +     L D+  D YA Q ++    D   + IGW  NW+     
Sbjct  223  YYFIGSFDLDGDKFTPDGEFLRL-DYGFDFYAPQTFND--PDGRRILIGWMGNWDSEAND  279

Query  312  VPTGPLEGWRSSMSLPKVHTLTKVDG  337
             PT   +GW  +MSLP+  TL    G
Sbjct  280  YPT---KGWAGAMSLPRELTLKDTGG  302



Lambda      K        H        a         alpha
   0.316    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00010167

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family...  277     2e-90


>CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family 32 N-terminal 
domain.  This domain corresponds to the N-terminal domain 
of glycosyl hydrolase family 32 which forms a five bladed 
beta propeller structure.
Length=308

 Score = 277 bits (711),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 125/326 (38%), Positives = 160/326 (49%), Gaps = 41/326 (13%)

Query  29   HFSPPSQFMNDPNGLFYDHKREVYHLYYQYNPSEIVAGNQHWGHATSKDLYHWTNHPIAI  88
            HF PP  +MNDPNGL Y      YHL+YQYNP   V GN+HWGHA SKDL HW + P+A+
Sbjct  1    HFQPPKGWMNDPNGLVY--YNGEYHLFYQYNPFGAVWGNKHWGHAVSKDLVHWEHLPVAL  58

Query  89   APSQPGE--WIYSGSAVMDSNNTSGFFPDQDDGVVAIYT----LATETLQTQQIAYSRDG  142
            AP +  +    +SGSAV+D            D +V IYT          Q Q +AYS+D 
Sbjct  59   APDEWYDSNGCFSGSAVVD-----------PDNLVLIYTGNVRDEGRDTQVQNLAYSKDD  107

Query  143  GYTFTKYENNPVLDID----SSQFRDPQVTWHPETQKWVMTIAYADDR---VIGFYTSPN  195
            G TFTKY NNPV+       +  FRDP+V W+ E  KW M +   D+     I  Y S +
Sbjct  108  GRTFTKYPNNPVIINLPAGYTKHFRDPKVAWY-EDGKWYMVLGAQDNDKKGKILLYKSDD  166

Query  196  LKEWTHASNFTQSGLPGT-QFECPNLVKFSVDDCDDSEDPTKWVLFISVNPGAPLGGSGT  254
            LK WT       S   G   +ECP+L      D     +  K VL  S    +       
Sbjct  167  LKNWTFVGELLHSNDGGGYMWECPDLFPLDGKD----GEKWKHVLKFSPQGLSYDNIYQD  222

Query  255  YYVVGSFN--GTHFTSESPRETLYDFAKDNYASQWYSGIPEDEPPVSIGWASNWNYTQ-Q  311
            YY +GSF+  G  FT +     L D+  D YA Q ++    D   + IGW  NW+     
Sbjct  223  YYFIGSFDLDGDKFTPDGEFLRL-DYGFDFYAPQTFND--PDGRRILIGWMGNWDSEAND  279

Query  312  VPTGPLEGWRSSMSLPKVHTLTKVDG  337
             PT   +GW  +MSLP+  TL    G
Sbjct  280  YPT---KGWAGAMSLPRELTLKDTGG  302



Lambda      K        H        a         alpha
   0.316    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00010168

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family...  277     2e-90


>CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family 32 N-terminal 
domain.  This domain corresponds to the N-terminal domain 
of glycosyl hydrolase family 32 which forms a five bladed 
beta propeller structure.
Length=308

 Score = 277 bits (711),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 125/326 (38%), Positives = 160/326 (49%), Gaps = 41/326 (13%)

Query  29   HFSPPSQFMNDPNGLFYDHKREVYHLYYQYNPSEIVAGNQHWGHATSKDLYHWTNHPIAI  88
            HF PP  +MNDPNGL Y      YHL+YQYNP   V GN+HWGHA SKDL HW + P+A+
Sbjct  1    HFQPPKGWMNDPNGLVY--YNGEYHLFYQYNPFGAVWGNKHWGHAVSKDLVHWEHLPVAL  58

Query  89   APSQPGE--WIYSGSAVMDSNNTSGFFPDQDDGVVAIYT----LATETLQTQQIAYSRDG  142
            AP +  +    +SGSAV+D            D +V IYT          Q Q +AYS+D 
Sbjct  59   APDEWYDSNGCFSGSAVVD-----------PDNLVLIYTGNVRDEGRDTQVQNLAYSKDD  107

Query  143  GYTFTKYENNPVLDID----SSQFRDPQVTWHPETQKWVMTIAYADDR---VIGFYTSPN  195
            G TFTKY NNPV+       +  FRDP+V W+ E  KW M +   D+     I  Y S +
Sbjct  108  GRTFTKYPNNPVIINLPAGYTKHFRDPKVAWY-EDGKWYMVLGAQDNDKKGKILLYKSDD  166

Query  196  LKEWTHASNFTQSGLPGT-QFECPNLVKFSVDDCDDSEDPTKWVLFISVNPGAPLGGSGT  254
            LK WT       S   G   +ECP+L      D     +  K VL  S    +       
Sbjct  167  LKNWTFVGELLHSNDGGGYMWECPDLFPLDGKD----GEKWKHVLKFSPQGLSYDNIYQD  222

Query  255  YYVVGSFN--GTHFTSESPRETLYDFAKDNYASQWYSGIPEDEPPVSIGWASNWNYTQ-Q  311
            YY +GSF+  G  FT +     L D+  D YA Q ++    D   + IGW  NW+     
Sbjct  223  YYFIGSFDLDGDKFTPDGEFLRL-DYGFDFYAPQTFND--PDGRRILIGWMGNWDSEAND  279

Query  312  VPTGPLEGWRSSMSLPKVHTLTKVDG  337
             PT   +GW  +MSLP+  TL    G
Sbjct  280  YPT---KGWAGAMSLPRELTLKDTGG  302



Lambda      K        H        a         alpha
   0.316    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0859    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00017012

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family...  277     2e-90


>CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family 32 N-terminal 
domain.  This domain corresponds to the N-terminal domain 
of glycosyl hydrolase family 32 which forms a five bladed 
beta propeller structure.
Length=308

 Score = 277 bits (711),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 125/326 (38%), Positives = 160/326 (49%), Gaps = 41/326 (13%)

Query  29   HFSPPSQFMNDPNGLFYDHKREVYHLYYQYNPSEIVAGNQHWGHATSKDLYHWTNHPIAI  88
            HF PP  +MNDPNGL Y      YHL+YQYNP   V GN+HWGHA SKDL HW + P+A+
Sbjct  1    HFQPPKGWMNDPNGLVY--YNGEYHLFYQYNPFGAVWGNKHWGHAVSKDLVHWEHLPVAL  58

Query  89   APSQPGE--WIYSGSAVMDSNNTSGFFPDQDDGVVAIYT----LATETLQTQQIAYSRDG  142
            AP +  +    +SGSAV+D            D +V IYT          Q Q +AYS+D 
Sbjct  59   APDEWYDSNGCFSGSAVVD-----------PDNLVLIYTGNVRDEGRDTQVQNLAYSKDD  107

Query  143  GYTFTKYENNPVLDID----SSQFRDPQVTWHPETQKWVMTIAYADDR---VIGFYTSPN  195
            G TFTKY NNPV+       +  FRDP+V W+ E  KW M +   D+     I  Y S +
Sbjct  108  GRTFTKYPNNPVIINLPAGYTKHFRDPKVAWY-EDGKWYMVLGAQDNDKKGKILLYKSDD  166

Query  196  LKEWTHASNFTQSGLPGT-QFECPNLVKFSVDDCDDSEDPTKWVLFISVNPGAPLGGSGT  254
            LK WT       S   G   +ECP+L      D     +  K VL  S    +       
Sbjct  167  LKNWTFVGELLHSNDGGGYMWECPDLFPLDGKD----GEKWKHVLKFSPQGLSYDNIYQD  222

Query  255  YYVVGSFN--GTHFTSESPRETLYDFAKDNYASQWYSGIPEDEPPVSIGWASNWNYTQ-Q  311
            YY +GSF+  G  FT +     L D+  D YA Q ++    D   + IGW  NW+     
Sbjct  223  YYFIGSFDLDGDKFTPDGEFLRL-DYGFDFYAPQTFND--PDGRRILIGWMGNWDSEAND  279

Query  312  VPTGPLEGWRSSMSLPKVHTLTKVDG  337
             PT   +GW  +MSLP+  TL    G
Sbjct  280  YPT---KGWAGAMSLPRELTLKDTGG  302



Lambda      K        H        a         alpha
   0.316    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00010169

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family...  277     2e-90


>CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family 32 N-terminal 
domain.  This domain corresponds to the N-terminal domain 
of glycosyl hydrolase family 32 which forms a five bladed 
beta propeller structure.
Length=308

 Score = 277 bits (711),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 125/326 (38%), Positives = 160/326 (49%), Gaps = 41/326 (13%)

Query  29   HFSPPSQFMNDPNGLFYDHKREVYHLYYQYNPSEIVAGNQHWGHATSKDLYHWTNHPIAI  88
            HF PP  +MNDPNGL Y      YHL+YQYNP   V GN+HWGHA SKDL HW + P+A+
Sbjct  1    HFQPPKGWMNDPNGLVY--YNGEYHLFYQYNPFGAVWGNKHWGHAVSKDLVHWEHLPVAL  58

Query  89   APSQPGE--WIYSGSAVMDSNNTSGFFPDQDDGVVAIYT----LATETLQTQQIAYSRDG  142
            AP +  +    +SGSAV+D            D +V IYT          Q Q +AYS+D 
Sbjct  59   APDEWYDSNGCFSGSAVVD-----------PDNLVLIYTGNVRDEGRDTQVQNLAYSKDD  107

Query  143  GYTFTKYENNPVLDID----SSQFRDPQVTWHPETQKWVMTIAYADDR---VIGFYTSPN  195
            G TFTKY NNPV+       +  FRDP+V W+ E  KW M +   D+     I  Y S +
Sbjct  108  GRTFTKYPNNPVIINLPAGYTKHFRDPKVAWY-EDGKWYMVLGAQDNDKKGKILLYKSDD  166

Query  196  LKEWTHASNFTQSGLPGT-QFECPNLVKFSVDDCDDSEDPTKWVLFISVNPGAPLGGSGT  254
            LK WT       S   G   +ECP+L      D     +  K VL  S    +       
Sbjct  167  LKNWTFVGELLHSNDGGGYMWECPDLFPLDGKD----GEKWKHVLKFSPQGLSYDNIYQD  222

Query  255  YYVVGSFN--GTHFTSESPRETLYDFAKDNYASQWYSGIPEDEPPVSIGWASNWNYTQ-Q  311
            YY +GSF+  G  FT +     L D+  D YA Q ++    D   + IGW  NW+     
Sbjct  223  YYFIGSFDLDGDKFTPDGEFLRL-DYGFDFYAPQTFND--PDGRRILIGWMGNWDSEAND  279

Query  312  VPTGPLEGWRSSMSLPKVHTLTKVDG  337
             PT   +GW  +MSLP+  TL    G
Sbjct  280  YPT---KGWAGAMSLPRELTLKDTGG  302



Lambda      K        H        a         alpha
   0.316    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00017013

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family...  277     2e-90


>CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family 32 N-terminal 
domain.  This domain corresponds to the N-terminal domain 
of glycosyl hydrolase family 32 which forms a five bladed 
beta propeller structure.
Length=308

 Score = 277 bits (711),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 125/326 (38%), Positives = 160/326 (49%), Gaps = 41/326 (13%)

Query  29   HFSPPSQFMNDPNGLFYDHKREVYHLYYQYNPSEIVAGNQHWGHATSKDLYHWTNHPIAI  88
            HF PP  +MNDPNGL Y      YHL+YQYNP   V GN+HWGHA SKDL HW + P+A+
Sbjct  1    HFQPPKGWMNDPNGLVY--YNGEYHLFYQYNPFGAVWGNKHWGHAVSKDLVHWEHLPVAL  58

Query  89   APSQPGE--WIYSGSAVMDSNNTSGFFPDQDDGVVAIYT----LATETLQTQQIAYSRDG  142
            AP +  +    +SGSAV+D            D +V IYT          Q Q +AYS+D 
Sbjct  59   APDEWYDSNGCFSGSAVVD-----------PDNLVLIYTGNVRDEGRDTQVQNLAYSKDD  107

Query  143  GYTFTKYENNPVLDID----SSQFRDPQVTWHPETQKWVMTIAYADDR---VIGFYTSPN  195
            G TFTKY NNPV+       +  FRDP+V W+ E  KW M +   D+     I  Y S +
Sbjct  108  GRTFTKYPNNPVIINLPAGYTKHFRDPKVAWY-EDGKWYMVLGAQDNDKKGKILLYKSDD  166

Query  196  LKEWTHASNFTQSGLPGT-QFECPNLVKFSVDDCDDSEDPTKWVLFISVNPGAPLGGSGT  254
            LK WT       S   G   +ECP+L      D     +  K VL  S    +       
Sbjct  167  LKNWTFVGELLHSNDGGGYMWECPDLFPLDGKD----GEKWKHVLKFSPQGLSYDNIYQD  222

Query  255  YYVVGSFN--GTHFTSESPRETLYDFAKDNYASQWYSGIPEDEPPVSIGWASNWNYTQ-Q  311
            YY +GSF+  G  FT +     L D+  D YA Q ++    D   + IGW  NW+     
Sbjct  223  YYFIGSFDLDGDKFTPDGEFLRL-DYGFDFYAPQTFND--PDGRRILIGWMGNWDSEAND  279

Query  312  VPTGPLEGWRSSMSLPKVHTLTKVDG  337
             PT   +GW  +MSLP+  TL    G
Sbjct  280  YPT---KGWAGAMSLPRELTLKDTGG  302



Lambda      K        H        a         alpha
   0.316    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00017014

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family...  277     2e-90


>CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family 32 N-terminal 
domain.  This domain corresponds to the N-terminal domain 
of glycosyl hydrolase family 32 which forms a five bladed 
beta propeller structure.
Length=308

 Score = 277 bits (711),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 125/326 (38%), Positives = 160/326 (49%), Gaps = 41/326 (13%)

Query  29   HFSPPSQFMNDPNGLFYDHKREVYHLYYQYNPSEIVAGNQHWGHATSKDLYHWTNHPIAI  88
            HF PP  +MNDPNGL Y      YHL+YQYNP   V GN+HWGHA SKDL HW + P+A+
Sbjct  1    HFQPPKGWMNDPNGLVY--YNGEYHLFYQYNPFGAVWGNKHWGHAVSKDLVHWEHLPVAL  58

Query  89   APSQPGE--WIYSGSAVMDSNNTSGFFPDQDDGVVAIYT----LATETLQTQQIAYSRDG  142
            AP +  +    +SGSAV+D            D +V IYT          Q Q +AYS+D 
Sbjct  59   APDEWYDSNGCFSGSAVVD-----------PDNLVLIYTGNVRDEGRDTQVQNLAYSKDD  107

Query  143  GYTFTKYENNPVLDID----SSQFRDPQVTWHPETQKWVMTIAYADDR---VIGFYTSPN  195
            G TFTKY NNPV+       +  FRDP+V W+ E  KW M +   D+     I  Y S +
Sbjct  108  GRTFTKYPNNPVIINLPAGYTKHFRDPKVAWY-EDGKWYMVLGAQDNDKKGKILLYKSDD  166

Query  196  LKEWTHASNFTQSGLPGT-QFECPNLVKFSVDDCDDSEDPTKWVLFISVNPGAPLGGSGT  254
            LK WT       S   G   +ECP+L      D     +  K VL  S    +       
Sbjct  167  LKNWTFVGELLHSNDGGGYMWECPDLFPLDGKD----GEKWKHVLKFSPQGLSYDNIYQD  222

Query  255  YYVVGSFN--GTHFTSESPRETLYDFAKDNYASQWYSGIPEDEPPVSIGWASNWNYTQ-Q  311
            YY +GSF+  G  FT +     L D+  D YA Q ++    D   + IGW  NW+     
Sbjct  223  YYFIGSFDLDGDKFTPDGEFLRL-DYGFDFYAPQTFND--PDGRRILIGWMGNWDSEAND  279

Query  312  VPTGPLEGWRSSMSLPKVHTLTKVDG  337
             PT   +GW  +MSLP+  TL    G
Sbjct  280  YPT---KGWAGAMSLPRELTLKDTGG  302



Lambda      K        H        a         alpha
   0.316    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00017015

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family...  277     2e-90


>CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family 32 N-terminal 
domain.  This domain corresponds to the N-terminal domain 
of glycosyl hydrolase family 32 which forms a five bladed 
beta propeller structure.
Length=308

 Score = 277 bits (711),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 125/326 (38%), Positives = 160/326 (49%), Gaps = 41/326 (13%)

Query  29   HFSPPSQFMNDPNGLFYDHKREVYHLYYQYNPSEIVAGNQHWGHATSKDLYHWTNHPIAI  88
            HF PP  +MNDPNGL Y      YHL+YQYNP   V GN+HWGHA SKDL HW + P+A+
Sbjct  1    HFQPPKGWMNDPNGLVY--YNGEYHLFYQYNPFGAVWGNKHWGHAVSKDLVHWEHLPVAL  58

Query  89   APSQPGE--WIYSGSAVMDSNNTSGFFPDQDDGVVAIYT----LATETLQTQQIAYSRDG  142
            AP +  +    +SGSAV+D            D +V IYT          Q Q +AYS+D 
Sbjct  59   APDEWYDSNGCFSGSAVVD-----------PDNLVLIYTGNVRDEGRDTQVQNLAYSKDD  107

Query  143  GYTFTKYENNPVLDID----SSQFRDPQVTWHPETQKWVMTIAYADDR---VIGFYTSPN  195
            G TFTKY NNPV+       +  FRDP+V W+ E  KW M +   D+     I  Y S +
Sbjct  108  GRTFTKYPNNPVIINLPAGYTKHFRDPKVAWY-EDGKWYMVLGAQDNDKKGKILLYKSDD  166

Query  196  LKEWTHASNFTQSGLPGT-QFECPNLVKFSVDDCDDSEDPTKWVLFISVNPGAPLGGSGT  254
            LK WT       S   G   +ECP+L      D     +  K VL  S    +       
Sbjct  167  LKNWTFVGELLHSNDGGGYMWECPDLFPLDGKD----GEKWKHVLKFSPQGLSYDNIYQD  222

Query  255  YYVVGSFN--GTHFTSESPRETLYDFAKDNYASQWYSGIPEDEPPVSIGWASNWNYTQ-Q  311
            YY +GSF+  G  FT +     L D+  D YA Q ++    D   + IGW  NW+     
Sbjct  223  YYFIGSFDLDGDKFTPDGEFLRL-DYGFDFYAPQTFND--PDGRRILIGWMGNWDSEAND  279

Query  312  VPTGPLEGWRSSMSLPKVHTLTKVDG  337
             PT   +GW  +MSLP+  TL    G
Sbjct  280  YPT---KGWAGAMSLPRELTLKDTGG  302



Lambda      K        H        a         alpha
   0.316    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00010170

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family...  277     2e-90


>CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family 32 N-terminal 
domain.  This domain corresponds to the N-terminal domain 
of glycosyl hydrolase family 32 which forms a five bladed 
beta propeller structure.
Length=308

 Score = 277 bits (711),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 125/326 (38%), Positives = 160/326 (49%), Gaps = 41/326 (13%)

Query  29   HFSPPSQFMNDPNGLFYDHKREVYHLYYQYNPSEIVAGNQHWGHATSKDLYHWTNHPIAI  88
            HF PP  +MNDPNGL Y      YHL+YQYNP   V GN+HWGHA SKDL HW + P+A+
Sbjct  1    HFQPPKGWMNDPNGLVY--YNGEYHLFYQYNPFGAVWGNKHWGHAVSKDLVHWEHLPVAL  58

Query  89   APSQPGE--WIYSGSAVMDSNNTSGFFPDQDDGVVAIYT----LATETLQTQQIAYSRDG  142
            AP +  +    +SGSAV+D            D +V IYT          Q Q +AYS+D 
Sbjct  59   APDEWYDSNGCFSGSAVVD-----------PDNLVLIYTGNVRDEGRDTQVQNLAYSKDD  107

Query  143  GYTFTKYENNPVLDID----SSQFRDPQVTWHPETQKWVMTIAYADDR---VIGFYTSPN  195
            G TFTKY NNPV+       +  FRDP+V W+ E  KW M +   D+     I  Y S +
Sbjct  108  GRTFTKYPNNPVIINLPAGYTKHFRDPKVAWY-EDGKWYMVLGAQDNDKKGKILLYKSDD  166

Query  196  LKEWTHASNFTQSGLPGT-QFECPNLVKFSVDDCDDSEDPTKWVLFISVNPGAPLGGSGT  254
            LK WT       S   G   +ECP+L      D     +  K VL  S    +       
Sbjct  167  LKNWTFVGELLHSNDGGGYMWECPDLFPLDGKD----GEKWKHVLKFSPQGLSYDNIYQD  222

Query  255  YYVVGSFN--GTHFTSESPRETLYDFAKDNYASQWYSGIPEDEPPVSIGWASNWNYTQ-Q  311
            YY +GSF+  G  FT +     L D+  D YA Q ++    D   + IGW  NW+     
Sbjct  223  YYFIGSFDLDGDKFTPDGEFLRL-DYGFDFYAPQTFND--PDGRRILIGWMGNWDSEAND  279

Query  312  VPTGPLEGWRSSMSLPKVHTLTKVDG  337
             PT   +GW  +MSLP+  TL    G
Sbjct  280  YPT---KGWAGAMSLPRELTLKDTGG  302



Lambda      K        H        a         alpha
   0.316    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00017016

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family...  261     1e-84


>CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family 32 N-terminal 
domain.  This domain corresponds to the N-terminal domain 
of glycosyl hydrolase family 32 which forms a five bladed 
beta propeller structure.
Length=308

 Score = 261 bits (668),  Expect = 1e-84, Method: Composition-based stats.
 Identities = 120/318 (38%), Positives = 154/318 (48%), Gaps = 41/318 (13%)

Query  1    MNDPNGLFYDHKREVYHLYYQCNPSEIVAGNQHWGHATSKDLYHWTNHPIAIAPSQPGE-  59
            MNDPNGL Y      YHL+YQ NP   V GN+HWGHA SKDL HW + P+A+AP +  + 
Sbjct  9    MNDPNGLVY--YNGEYHLFYQYNPFGAVWGNKHWGHAVSKDLVHWEHLPVALAPDEWYDS  66

Query  60   -WIYSGSAVMDSNNTSGFFPDQDDGVVAIYT----LATETLQTQQIAYSRDGGYTFTKYE  114
               +SGSAV+D            D +V IYT          Q Q +AYS+D G TFTKY 
Sbjct  67   NGCFSGSAVVD-----------PDNLVLIYTGNVRDEGRDTQVQNLAYSKDDGRTFTKYP  115

Query  115  NNPVLDID----SSQFRDPQVTWHPETQKWVMTIAYADDR---VIGFYTSPNLKEWTHAS  167
            NNPV+       +  FRDP+V W+ E  KW M +   D+     I  Y S +LK WT   
Sbjct  116  NNPVIINLPAGYTKHFRDPKVAWY-EDGKWYMVLGAQDNDKKGKILLYKSDDLKNWTFVG  174

Query  168  NFTQSGLPGT-QFECPNLVKFSVDDCDDSEDPTKWVLFISVNPGAPLGGSGTYYVVGSFN  226
                S   G   +ECP+L      D     +  K VL  S    +       YY +GSF+
Sbjct  175  ELLHSNDGGGYMWECPDLFPLDGKD----GEKWKHVLKFSPQGLSYDNIYQDYYFIGSFD  230

Query  227  --GTHFTSESPRETLYDFAKDNYASQWYSGIPEDEPPVSIGWASNWNYTQ-QVPTGPLEG  283
              G  FT +     L D+  D YA Q ++    D   + IGW  NW+      PT   +G
Sbjct  231  LDGDKFTPDGEFLRL-DYGFDFYAPQTFND--PDGRRILIGWMGNWDSEANDYPT---KG  284

Query  284  WRSSMSLPKVHTLTKVDG  301
            W  +MSLP+  TL    G
Sbjct  285  WAGAMSLPRELTLKDTGG  302



Lambda      K        H        a         alpha
   0.315    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00010171

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:310284 pfam05577, Peptidase_S28, Serine carboxypeptidase S28....  177     8e-51


>CDD:310284 pfam05577, Peptidase_S28, Serine carboxypeptidase S28.  These 
serine proteases include several eukaryotic enzymes such as 
lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, 
and thymus-specific serine peptidase.
Length=434

 Score = 177 bits (452),  Expect = 8e-51, Method: Composition-based stats.
 Identities = 108/458 (24%), Positives = 170/458 (37%), Gaps = 58/458 (13%)

Query  47   QYIDH-NNPGLGTFPQRYWYNPEFWAGPGSPVLLFTPGESDAADYDGFLTNKTIVGRFAE  105
            Q +DH +     TF QRY+YN + +   G P+ L   GE   +     + N   +   A+
Sbjct  1    QKLDHFDPSNNRTFQQRYFYNDQHYRN-GGPIFLMIGGEGPESASW--VRNGHWL-DLAK  56

Query  106  EIGGAVILLEHRYWGASSPYPELTTETLQYLTLEQSIADLVHFAKTVNLPFDEIHSSNAD  165
            E G  V  LEHR++G S P  +L+TE L+YL+  Q++ADL  F K +N  F+        
Sbjct  57   EFGALVFSLEHRFYGQSRPIGDLSTENLRYLSSLQALADLASFIKAMNQKFN-----GLS  111

Query  166  NAPWVMTGGSYSGALAAWTASIAPGTFWAYHASSAPVQAIYDFWQYFVPVVEGMPKN---  222
            ++ W+  GGSYSG+LAAW     P       ASSAP+ A  DF +Y + V   + +    
Sbjct  112  SSKWITFGGSYSGSLAAWFRKKYPHLVVGAVASSAPLLAKVDFKEYNMVVETSLRQTGGE  171

Query  223  CSKDLNRVVEYIDHVYESGDIERQQEIKEMFGL-GALKHFDDFAAAITNGPWLWQDMNFV  281
            C+  + +    ++ +  +   E +Q +     L   L    D             D    
Sbjct  172  CADAIEQGFAEVEQLLLTK--EGRQALSSELQLCPPLDQTTD------------LDQLNF  217

Query  282  SGYSRFYKFCDAVENVTPGAKSVPGPEGVGLEKALQGYASWFNSTYLPGSCAEYKYWTDK  341
              +S  Y     V   T   +             +        +T L           + 
Sbjct  218  --FSNIYSNFQGVVQYTYDGQG-NSTLNGYTIPDMCKIMLNATTTDLILRVEVLIQLFNY  274

Query  342  DAVDCYDSYETNSPIYTDKAVNN---------TSNKQWTWFLCNEPLFYWQDGAPKDEST  392
                  ++      I    A  +           ++QWTW  C E  FY    +    + 
Sbjct  275  LNQKSGNNSTA--DISYQLANADYGDSSYGSYADDRQWTWQTCTEFGFYQTTDSG---NQ  329

Query  393  IVSRIVSAEYWQRQCHAYFPEVNGYTFGSANGKTAEDV-NKWTKGWDLTNTTRLIWANGQ  451
                      +   C   F    G ++ S          N +  G D  N T +++ NG 
Sbjct  330  PFGSPFPVTLYIDMCMDVF----GASYNSTKISLRVLATNYYYGGADNPNATNVVFVNGD  385

Query  452  FDPWRDASVSSKTRPGGPLQSTEQAPVHVIPGGFHCSD  489
             DPW    +   T       S+     ++IPG  HC+D
Sbjct  386  LDPWHALGLGDST------DSSV--VPYLIPGAAHCAD  415



Lambda      K        H        a         alpha
   0.317    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00010175

Length=988
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430604 pfam09427, DUF2014, Domain of unknown function (DUF201...  428     3e-144
CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain        65.9    3e-14 


>CDD:430604 pfam09427, DUF2014, Domain of unknown function (DUF2014).  This 
domain is found at the C terminal of a family of ER membrane 
bound transcription factors called sterol regulatory element 
binding proteins (SREBP).
Length=262

 Score = 428 bits (1103),  Expect = 3e-144, Method: Composition-based stats.
 Identities = 151/267 (57%), Positives = 183/267 (69%), Gaps = 8/267 (3%)

Query  500  RCFEYVLRCLLGWKLYSLVTGVTEEDEKGRVKTWDIAIDAQLAGGDAEISKSRLVLTIFA  559
            +  +  LR L+GW  YS +TG+TEE E  RVK WDIA+DAQLAGGD EISKSRLVLT+ A
Sbjct  1    KTLKLSLRNLIGWHGYSALTGLTEEQEAARVKAWDIALDAQLAGGDVEISKSRLVLTLLA  60

Query  560  AGTLPRSPMRMMLKALHCRILMWRVGEPGSWTFNVSNDVARSLARYQWDLARKMNAALPK  619
            +GTLP +P R+MLKALH R+L+W VG  GS    V N +A  LARYQW+ AR++N  LP+
Sbjct  61   SGTLPDTPARLMLKALHIRVLLWEVGGAGSGNLPVFNAIAAKLARYQWNEARQLNRLLPQ  120

Query  620  DHP---DSLPSHLATLLKIDCDDVMIDTIIQRAANLTWNRPTQEGTDDDEALLDVVEEDP  676
             H    D LP HLA LL+ DCDDV+ D I+QRA NL WNRPT E  D D+  +D V EDP
Sbjct  121  LHESADDELPEHLAALLEQDCDDVLSDDIVQRAYNLAWNRPTTENADGDDDGMDSVVEDP  180

Query  677  AIQSSLDALAAWWSSHLLQGALLRYFEASSGGPDAKKSRNVFKSKIKLALDVAPQPSAAH  736
            A++S LDA+AAW+SS LLQ ALL   E      D  ++R V +  + LAL VAP  SAA 
Sbjct  181  AVRSPLDAVAAWYSSLLLQRALLESLE-----DDETEAREVVEDDLDLALKVAPPGSAAQ  235

Query  737  TRALVMMAVFFERDRVANIGSVLAALP  763
             RALV  AV F+  R ANI + LAALP
Sbjct  236  VRALVAKAVLFDEKRGANIAAALAALP  262


>CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain.  
Length=53

 Score = 65.9 bits (162),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (49%), Gaps = 19/72 (26%)

Query  166  KKRAHNVIEKRYRANLNEKIAELRDSVPSLRASYKQANGNSGDDDDDGVTSASKLNKASI  225
            ++ AHN  E+R R  +N+   ELR+ +P+L                       KL+KA I
Sbjct  1    RREAHNERERRRRDRINDAFDELRELLPTLPPD-------------------KKLSKAEI  41

Query  226  LSKATEYIRHLE  237
            L  A EYI+HL+
Sbjct  42   LRLAIEYIKHLQ  53



Lambda      K        H        a         alpha
   0.315    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1262961392


Query= TCONS_00010176

Length=988
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430604 pfam09427, DUF2014, Domain of unknown function (DUF201...  428     3e-144
CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain        65.9    3e-14 


>CDD:430604 pfam09427, DUF2014, Domain of unknown function (DUF2014).  This 
domain is found at the C terminal of a family of ER membrane 
bound transcription factors called sterol regulatory element 
binding proteins (SREBP).
Length=262

 Score = 428 bits (1103),  Expect = 3e-144, Method: Composition-based stats.
 Identities = 151/267 (57%), Positives = 183/267 (69%), Gaps = 8/267 (3%)

Query  500  RCFEYVLRCLLGWKLYSLVTGVTEEDEKGRVKTWDIAIDAQLAGGDAEISKSRLVLTIFA  559
            +  +  LR L+GW  YS +TG+TEE E  RVK WDIA+DAQLAGGD EISKSRLVLT+ A
Sbjct  1    KTLKLSLRNLIGWHGYSALTGLTEEQEAARVKAWDIALDAQLAGGDVEISKSRLVLTLLA  60

Query  560  AGTLPRSPMRMMLKALHCRILMWRVGEPGSWTFNVSNDVARSLARYQWDLARKMNAALPK  619
            +GTLP +P R+MLKALH R+L+W VG  GS    V N +A  LARYQW+ AR++N  LP+
Sbjct  61   SGTLPDTPARLMLKALHIRVLLWEVGGAGSGNLPVFNAIAAKLARYQWNEARQLNRLLPQ  120

Query  620  DHP---DSLPSHLATLLKIDCDDVMIDTIIQRAANLTWNRPTQEGTDDDEALLDVVEEDP  676
             H    D LP HLA LL+ DCDDV+ D I+QRA NL WNRPT E  D D+  +D V EDP
Sbjct  121  LHESADDELPEHLAALLEQDCDDVLSDDIVQRAYNLAWNRPTTENADGDDDGMDSVVEDP  180

Query  677  AIQSSLDALAAWWSSHLLQGALLRYFEASSGGPDAKKSRNVFKSKIKLALDVAPQPSAAH  736
            A++S LDA+AAW+SS LLQ ALL   E      D  ++R V +  + LAL VAP  SAA 
Sbjct  181  AVRSPLDAVAAWYSSLLLQRALLESLE-----DDETEAREVVEDDLDLALKVAPPGSAAQ  235

Query  737  TRALVMMAVFFERDRVANIGSVLAALP  763
             RALV  AV F+  R ANI + LAALP
Sbjct  236  VRALVAKAVLFDEKRGANIAAALAALP  262


>CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain.  
Length=53

 Score = 65.9 bits (162),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (49%), Gaps = 19/72 (26%)

Query  166  KKRAHNVIEKRYRANLNEKIAELRDSVPSLRASYKQANGNSGDDDDDGVTSASKLNKASI  225
            ++ AHN  E+R R  +N+   ELR+ +P+L                       KL+KA I
Sbjct  1    RREAHNERERRRRDRINDAFDELRELLPTLPPD-------------------KKLSKAEI  41

Query  226  LSKATEYIRHLE  237
            L  A EYI+HL+
Sbjct  42   LRLAIEYIKHLQ  53



Lambda      K        H        a         alpha
   0.315    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1262961392


Query= TCONS_00010174

Length=988
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430604 pfam09427, DUF2014, Domain of unknown function (DUF201...  428     3e-144
CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain        65.9    3e-14 


>CDD:430604 pfam09427, DUF2014, Domain of unknown function (DUF2014).  This 
domain is found at the C terminal of a family of ER membrane 
bound transcription factors called sterol regulatory element 
binding proteins (SREBP).
Length=262

 Score = 428 bits (1103),  Expect = 3e-144, Method: Composition-based stats.
 Identities = 151/267 (57%), Positives = 183/267 (69%), Gaps = 8/267 (3%)

Query  500  RCFEYVLRCLLGWKLYSLVTGVTEEDEKGRVKTWDIAIDAQLAGGDAEISKSRLVLTIFA  559
            +  +  LR L+GW  YS +TG+TEE E  RVK WDIA+DAQLAGGD EISKSRLVLT+ A
Sbjct  1    KTLKLSLRNLIGWHGYSALTGLTEEQEAARVKAWDIALDAQLAGGDVEISKSRLVLTLLA  60

Query  560  AGTLPRSPMRMMLKALHCRILMWRVGEPGSWTFNVSNDVARSLARYQWDLARKMNAALPK  619
            +GTLP +P R+MLKALH R+L+W VG  GS    V N +A  LARYQW+ AR++N  LP+
Sbjct  61   SGTLPDTPARLMLKALHIRVLLWEVGGAGSGNLPVFNAIAAKLARYQWNEARQLNRLLPQ  120

Query  620  DHP---DSLPSHLATLLKIDCDDVMIDTIIQRAANLTWNRPTQEGTDDDEALLDVVEEDP  676
             H    D LP HLA LL+ DCDDV+ D I+QRA NL WNRPT E  D D+  +D V EDP
Sbjct  121  LHESADDELPEHLAALLEQDCDDVLSDDIVQRAYNLAWNRPTTENADGDDDGMDSVVEDP  180

Query  677  AIQSSLDALAAWWSSHLLQGALLRYFEASSGGPDAKKSRNVFKSKIKLALDVAPQPSAAH  736
            A++S LDA+AAW+SS LLQ ALL   E      D  ++R V +  + LAL VAP  SAA 
Sbjct  181  AVRSPLDAVAAWYSSLLLQRALLESLE-----DDETEAREVVEDDLDLALKVAPPGSAAQ  235

Query  737  TRALVMMAVFFERDRVANIGSVLAALP  763
             RALV  AV F+  R ANI + LAALP
Sbjct  236  VRALVAKAVLFDEKRGANIAAALAALP  262


>CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain.  
Length=53

 Score = 65.9 bits (162),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (49%), Gaps = 19/72 (26%)

Query  166  KKRAHNVIEKRYRANLNEKIAELRDSVPSLRASYKQANGNSGDDDDDGVTSASKLNKASI  225
            ++ AHN  E+R R  +N+   ELR+ +P+L                       KL+KA I
Sbjct  1    RREAHNERERRRRDRINDAFDELRELLPTLPPD-------------------KKLSKAEI  41

Query  226  LSKATEYIRHLE  237
            L  A EYI+HL+
Sbjct  42   LRLAIEYIKHLQ  53



Lambda      K        H        a         alpha
   0.315    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1262961392


Query= TCONS_00010173

Length=988
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430604 pfam09427, DUF2014, Domain of unknown function (DUF201...  428     3e-144
CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain        65.9    3e-14 


>CDD:430604 pfam09427, DUF2014, Domain of unknown function (DUF2014).  This 
domain is found at the C terminal of a family of ER membrane 
bound transcription factors called sterol regulatory element 
binding proteins (SREBP).
Length=262

 Score = 428 bits (1103),  Expect = 3e-144, Method: Composition-based stats.
 Identities = 151/267 (57%), Positives = 183/267 (69%), Gaps = 8/267 (3%)

Query  500  RCFEYVLRCLLGWKLYSLVTGVTEEDEKGRVKTWDIAIDAQLAGGDAEISKSRLVLTIFA  559
            +  +  LR L+GW  YS +TG+TEE E  RVK WDIA+DAQLAGGD EISKSRLVLT+ A
Sbjct  1    KTLKLSLRNLIGWHGYSALTGLTEEQEAARVKAWDIALDAQLAGGDVEISKSRLVLTLLA  60

Query  560  AGTLPRSPMRMMLKALHCRILMWRVGEPGSWTFNVSNDVARSLARYQWDLARKMNAALPK  619
            +GTLP +P R+MLKALH R+L+W VG  GS    V N +A  LARYQW+ AR++N  LP+
Sbjct  61   SGTLPDTPARLMLKALHIRVLLWEVGGAGSGNLPVFNAIAAKLARYQWNEARQLNRLLPQ  120

Query  620  DHP---DSLPSHLATLLKIDCDDVMIDTIIQRAANLTWNRPTQEGTDDDEALLDVVEEDP  676
             H    D LP HLA LL+ DCDDV+ D I+QRA NL WNRPT E  D D+  +D V EDP
Sbjct  121  LHESADDELPEHLAALLEQDCDDVLSDDIVQRAYNLAWNRPTTENADGDDDGMDSVVEDP  180

Query  677  AIQSSLDALAAWWSSHLLQGALLRYFEASSGGPDAKKSRNVFKSKIKLALDVAPQPSAAH  736
            A++S LDA+AAW+SS LLQ ALL   E      D  ++R V +  + LAL VAP  SAA 
Sbjct  181  AVRSPLDAVAAWYSSLLLQRALLESLE-----DDETEAREVVEDDLDLALKVAPPGSAAQ  235

Query  737  TRALVMMAVFFERDRVANIGSVLAALP  763
             RALV  AV F+  R ANI + LAALP
Sbjct  236  VRALVAKAVLFDEKRGANIAAALAALP  262


>CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain.  
Length=53

 Score = 65.9 bits (162),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (49%), Gaps = 19/72 (26%)

Query  166  KKRAHNVIEKRYRANLNEKIAELRDSVPSLRASYKQANGNSGDDDDDGVTSASKLNKASI  225
            ++ AHN  E+R R  +N+   ELR+ +P+L                       KL+KA I
Sbjct  1    RREAHNERERRRRDRINDAFDELRELLPTLPPD-------------------KKLSKAEI  41

Query  226  LSKATEYIRHLE  237
            L  A EYI+HL+
Sbjct  42   LRLAIEYIKHLQ  53



Lambda      K        H        a         alpha
   0.315    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1262961392


Query= TCONS_00010172

Length=988
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430604 pfam09427, DUF2014, Domain of unknown function (DUF201...  428     3e-144
CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain        65.9    3e-14 


>CDD:430604 pfam09427, DUF2014, Domain of unknown function (DUF2014).  This 
domain is found at the C terminal of a family of ER membrane 
bound transcription factors called sterol regulatory element 
binding proteins (SREBP).
Length=262

 Score = 428 bits (1103),  Expect = 3e-144, Method: Composition-based stats.
 Identities = 151/267 (57%), Positives = 183/267 (69%), Gaps = 8/267 (3%)

Query  500  RCFEYVLRCLLGWKLYSLVTGVTEEDEKGRVKTWDIAIDAQLAGGDAEISKSRLVLTIFA  559
            +  +  LR L+GW  YS +TG+TEE E  RVK WDIA+DAQLAGGD EISKSRLVLT+ A
Sbjct  1    KTLKLSLRNLIGWHGYSALTGLTEEQEAARVKAWDIALDAQLAGGDVEISKSRLVLTLLA  60

Query  560  AGTLPRSPMRMMLKALHCRILMWRVGEPGSWTFNVSNDVARSLARYQWDLARKMNAALPK  619
            +GTLP +P R+MLKALH R+L+W VG  GS    V N +A  LARYQW+ AR++N  LP+
Sbjct  61   SGTLPDTPARLMLKALHIRVLLWEVGGAGSGNLPVFNAIAAKLARYQWNEARQLNRLLPQ  120

Query  620  DHP---DSLPSHLATLLKIDCDDVMIDTIIQRAANLTWNRPTQEGTDDDEALLDVVEEDP  676
             H    D LP HLA LL+ DCDDV+ D I+QRA NL WNRPT E  D D+  +D V EDP
Sbjct  121  LHESADDELPEHLAALLEQDCDDVLSDDIVQRAYNLAWNRPTTENADGDDDGMDSVVEDP  180

Query  677  AIQSSLDALAAWWSSHLLQGALLRYFEASSGGPDAKKSRNVFKSKIKLALDVAPQPSAAH  736
            A++S LDA+AAW+SS LLQ ALL   E      D  ++R V +  + LAL VAP  SAA 
Sbjct  181  AVRSPLDAVAAWYSSLLLQRALLESLE-----DDETEAREVVEDDLDLALKVAPPGSAAQ  235

Query  737  TRALVMMAVFFERDRVANIGSVLAALP  763
             RALV  AV F+  R ANI + LAALP
Sbjct  236  VRALVAKAVLFDEKRGANIAAALAALP  262


>CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain.  
Length=53

 Score = 65.9 bits (162),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (49%), Gaps = 19/72 (26%)

Query  166  KKRAHNVIEKRYRANLNEKIAELRDSVPSLRASYKQANGNSGDDDDDGVTSASKLNKASI  225
            ++ AHN  E+R R  +N+   ELR+ +P+L                       KL+KA I
Sbjct  1    RREAHNERERRRRDRINDAFDELRELLPTLPPD-------------------KKLSKAEI  41

Query  226  LSKATEYIRHLE  237
            L  A EYI+HL+
Sbjct  42   LRLAIEYIKHLQ  53



Lambda      K        H        a         alpha
   0.315    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1262961392


Query= TCONS_00010178

Length=988
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430604 pfam09427, DUF2014, Domain of unknown function (DUF201...  428     3e-144
CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain        65.9    3e-14 


>CDD:430604 pfam09427, DUF2014, Domain of unknown function (DUF2014).  This 
domain is found at the C terminal of a family of ER membrane 
bound transcription factors called sterol regulatory element 
binding proteins (SREBP).
Length=262

 Score = 428 bits (1103),  Expect = 3e-144, Method: Composition-based stats.
 Identities = 151/267 (57%), Positives = 183/267 (69%), Gaps = 8/267 (3%)

Query  500  RCFEYVLRCLLGWKLYSLVTGVTEEDEKGRVKTWDIAIDAQLAGGDAEISKSRLVLTIFA  559
            +  +  LR L+GW  YS +TG+TEE E  RVK WDIA+DAQLAGGD EISKSRLVLT+ A
Sbjct  1    KTLKLSLRNLIGWHGYSALTGLTEEQEAARVKAWDIALDAQLAGGDVEISKSRLVLTLLA  60

Query  560  AGTLPRSPMRMMLKALHCRILMWRVGEPGSWTFNVSNDVARSLARYQWDLARKMNAALPK  619
            +GTLP +P R+MLKALH R+L+W VG  GS    V N +A  LARYQW+ AR++N  LP+
Sbjct  61   SGTLPDTPARLMLKALHIRVLLWEVGGAGSGNLPVFNAIAAKLARYQWNEARQLNRLLPQ  120

Query  620  DHP---DSLPSHLATLLKIDCDDVMIDTIIQRAANLTWNRPTQEGTDDDEALLDVVEEDP  676
             H    D LP HLA LL+ DCDDV+ D I+QRA NL WNRPT E  D D+  +D V EDP
Sbjct  121  LHESADDELPEHLAALLEQDCDDVLSDDIVQRAYNLAWNRPTTENADGDDDGMDSVVEDP  180

Query  677  AIQSSLDALAAWWSSHLLQGALLRYFEASSGGPDAKKSRNVFKSKIKLALDVAPQPSAAH  736
            A++S LDA+AAW+SS LLQ ALL   E      D  ++R V +  + LAL VAP  SAA 
Sbjct  181  AVRSPLDAVAAWYSSLLLQRALLESLE-----DDETEAREVVEDDLDLALKVAPPGSAAQ  235

Query  737  TRALVMMAVFFERDRVANIGSVLAALP  763
             RALV  AV F+  R ANI + LAALP
Sbjct  236  VRALVAKAVLFDEKRGANIAAALAALP  262


>CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain.  
Length=53

 Score = 65.9 bits (162),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (49%), Gaps = 19/72 (26%)

Query  166  KKRAHNVIEKRYRANLNEKIAELRDSVPSLRASYKQANGNSGDDDDDGVTSASKLNKASI  225
            ++ AHN  E+R R  +N+   ELR+ +P+L                       KL+KA I
Sbjct  1    RREAHNERERRRRDRINDAFDELRELLPTLPPD-------------------KKLSKAEI  41

Query  226  LSKATEYIRHLE  237
            L  A EYI+HL+
Sbjct  42   LRLAIEYIKHLQ  53



Lambda      K        H        a         alpha
   0.315    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1262961392


Query= TCONS_00010177

Length=988
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430604 pfam09427, DUF2014, Domain of unknown function (DUF201...  428     3e-144
CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain        65.9    3e-14 


>CDD:430604 pfam09427, DUF2014, Domain of unknown function (DUF2014).  This 
domain is found at the C terminal of a family of ER membrane 
bound transcription factors called sterol regulatory element 
binding proteins (SREBP).
Length=262

 Score = 428 bits (1103),  Expect = 3e-144, Method: Composition-based stats.
 Identities = 151/267 (57%), Positives = 183/267 (69%), Gaps = 8/267 (3%)

Query  500  RCFEYVLRCLLGWKLYSLVTGVTEEDEKGRVKTWDIAIDAQLAGGDAEISKSRLVLTIFA  559
            +  +  LR L+GW  YS +TG+TEE E  RVK WDIA+DAQLAGGD EISKSRLVLT+ A
Sbjct  1    KTLKLSLRNLIGWHGYSALTGLTEEQEAARVKAWDIALDAQLAGGDVEISKSRLVLTLLA  60

Query  560  AGTLPRSPMRMMLKALHCRILMWRVGEPGSWTFNVSNDVARSLARYQWDLARKMNAALPK  619
            +GTLP +P R+MLKALH R+L+W VG  GS    V N +A  LARYQW+ AR++N  LP+
Sbjct  61   SGTLPDTPARLMLKALHIRVLLWEVGGAGSGNLPVFNAIAAKLARYQWNEARQLNRLLPQ  120

Query  620  DHP---DSLPSHLATLLKIDCDDVMIDTIIQRAANLTWNRPTQEGTDDDEALLDVVEEDP  676
             H    D LP HLA LL+ DCDDV+ D I+QRA NL WNRPT E  D D+  +D V EDP
Sbjct  121  LHESADDELPEHLAALLEQDCDDVLSDDIVQRAYNLAWNRPTTENADGDDDGMDSVVEDP  180

Query  677  AIQSSLDALAAWWSSHLLQGALLRYFEASSGGPDAKKSRNVFKSKIKLALDVAPQPSAAH  736
            A++S LDA+AAW+SS LLQ ALL   E      D  ++R V +  + LAL VAP  SAA 
Sbjct  181  AVRSPLDAVAAWYSSLLLQRALLESLE-----DDETEAREVVEDDLDLALKVAPPGSAAQ  235

Query  737  TRALVMMAVFFERDRVANIGSVLAALP  763
             RALV  AV F+  R ANI + LAALP
Sbjct  236  VRALVAKAVLFDEKRGANIAAALAALP  262


>CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain.  
Length=53

 Score = 65.9 bits (162),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (49%), Gaps = 19/72 (26%)

Query  166  KKRAHNVIEKRYRANLNEKIAELRDSVPSLRASYKQANGNSGDDDDDGVTSASKLNKASI  225
            ++ AHN  E+R R  +N+   ELR+ +P+L                       KL+KA I
Sbjct  1    RREAHNERERRRRDRINDAFDELRELLPTLPPD-------------------KKLSKAEI  41

Query  226  LSKATEYIRHLE  237
            L  A EYI+HL+
Sbjct  42   LRLAIEYIKHLQ  53



Lambda      K        H        a         alpha
   0.315    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0703    0.140     1.90     42.6     43.6 

Effective search space used: 1262961392


Query= TCONS_00010179

Length=988
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430604 pfam09427, DUF2014, Domain of unknown function (DUF201...  428     3e-144
CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain        65.9    3e-14 


>CDD:430604 pfam09427, DUF2014, Domain of unknown function (DUF2014).  This 
domain is found at the C terminal of a family of ER membrane 
bound transcription factors called sterol regulatory element 
binding proteins (SREBP).
Length=262

 Score = 428 bits (1103),  Expect = 3e-144, Method: Composition-based stats.
 Identities = 151/267 (57%), Positives = 183/267 (69%), Gaps = 8/267 (3%)

Query  500  RCFEYVLRCLLGWKLYSLVTGVTEEDEKGRVKTWDIAIDAQLAGGDAEISKSRLVLTIFA  559
            +  +  LR L+GW  YS +TG+TEE E  RVK WDIA+DAQLAGGD EISKSRLVLT+ A
Sbjct  1    KTLKLSLRNLIGWHGYSALTGLTEEQEAARVKAWDIALDAQLAGGDVEISKSRLVLTLLA  60

Query  560  AGTLPRSPMRMMLKALHCRILMWRVGEPGSWTFNVSNDVARSLARYQWDLARKMNAALPK  619
            +GTLP +P R+MLKALH R+L+W VG  GS    V N +A  LARYQW+ AR++N  LP+
Sbjct  61   SGTLPDTPARLMLKALHIRVLLWEVGGAGSGNLPVFNAIAAKLARYQWNEARQLNRLLPQ  120

Query  620  DHP---DSLPSHLATLLKIDCDDVMIDTIIQRAANLTWNRPTQEGTDDDEALLDVVEEDP  676
             H    D LP HLA LL+ DCDDV+ D I+QRA NL WNRPT E  D D+  +D V EDP
Sbjct  121  LHESADDELPEHLAALLEQDCDDVLSDDIVQRAYNLAWNRPTTENADGDDDGMDSVVEDP  180

Query  677  AIQSSLDALAAWWSSHLLQGALLRYFEASSGGPDAKKSRNVFKSKIKLALDVAPQPSAAH  736
            A++S LDA+AAW+SS LLQ ALL   E      D  ++R V +  + LAL VAP  SAA 
Sbjct  181  AVRSPLDAVAAWYSSLLLQRALLESLE-----DDETEAREVVEDDLDLALKVAPPGSAAQ  235

Query  737  TRALVMMAVFFERDRVANIGSVLAALP  763
             RALV  AV F+  R ANI + LAALP
Sbjct  236  VRALVAKAVLFDEKRGANIAAALAALP  262


>CDD:459628 pfam00010, HLH, Helix-loop-helix DNA-binding domain.  
Length=53

 Score = 65.9 bits (162),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (49%), Gaps = 19/72 (26%)

Query  166  KKRAHNVIEKRYRANLNEKIAELRDSVPSLRASYKQANGNSGDDDDDGVTSASKLNKASI  225
            ++ AHN  E+R R  +N+   ELR+ +P+L                       KL+KA I
Sbjct  1    RREAHNERERRRRDRINDAFDELRELLPTLPPD-------------------KKLSKAEI  41

Query  226  LSKATEYIRHLE  237
            L  A EYI+HL+
Sbjct  42   LRLAIEYIKHLQ  53



Lambda      K        H        a         alpha
   0.315    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1262961392


Query= TCONS_00017017

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  105     1e-27
CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding...  74.3    2e-16
CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               67.0    3e-14


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 105 bits (265),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 69/122 (57%), Gaps = 1/122 (1%)

Query  147  AGHLAVMNSPVLVLSAGRNNPLIPLLGIPFDTFNFLHRWVGRVMIAGALIHMGCVIGAQA  206
             G LA+   P+L+L A RNNPL  L G+ +D     HRW+GR+    AL+H+   +    
Sbjct  1    LGILALALLPLLLLLALRNNPLEWLTGLSYDRLLLFHRWLGRLAFLLALLHVILYLI-YW  59

Query  207  MQVSMDAITKELWSQPFYVYGMIALIAFVVIFFQSVSPIRHAFYEAFLHFHIFLAIMAFV  266
            ++ S++ I   L  +P+ + G+IAL+  V++   S+ P R   YE FL+ HI LA+   +
Sbjct  60   LRFSLEGILDLLLKRPYNILGIIALVLLVLLAITSLPPFRRLSYELFLYLHILLAVAFLL  119

Query  267  GL  268
             +
Sbjct  120  LV  121


>CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain. 
 
Length=149

 Score = 74.3 bits (183),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 40/168 (24%), Positives = 70/168 (42%), Gaps = 28/168 (17%)

Query  433  YGTVLLIAGGIGITPPLSYLHEFADGFSDRSMAVRRVTLVWVVRHLEHLDWIQPWMASLF  492
            Y  VLL+AGGIGITP +S L +   G   + +  +++   WVVR L  L+W +  +  L 
Sbjct  1    YENVLLVAGGIGITPFISILKDL--GNKSKKLKTKKIKFYWVVRDLSSLEWFKDVLNELE  58

Query  493  DHPAVEAPNERKQTSYFQLSKFSLTIQVYVT--------AKGYTTDEHLSNKSPWTKSPP  544
            +                 L + ++ I +Y+T        +    +     N         
Sbjct  59   E-----------------LKELNIEIHIYLTGEYEAEDASDQSDSSIRSENFDSLMNEVI  101

Query  545  STVSISIKHGKPSFAEVVEAEMEQQVGA-MAVSVCGPGGMGDDVRQAV  591
                +    G+P++ EV++   +Q     + V  CGP  + D++R  V
Sbjct  102  GVDFVEFHFGRPNWKEVLKDIAKQHPNGSIGVFSCGPPSLVDELRNLV  149


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 67.0 bits (164),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 52/124 (42%), Gaps = 34/124 (27%)

Query  311  ATVELLPGDVARVEVAVSRP---WKFKAGQYMYLYI-PSLGLWTSHPFSVAWTSSDRMTT  366
            A V LLP +V  +++ VS+P   +K+K GQYM++   P L    SHPF++    SD    
Sbjct  7    AKVALLPDNV--LKLRVSKPKKPFKYKPGQYMFINFLPPLSFLQSHPFTITSAPSDD---  61

Query  367  NKKRDSSDSFNVLLGGRQRTTMSFLIKRRDGFTNKLLTKVHRSEAGRFN-----ATALAE  421
                                 +S  IK + G+T KL   +  S              L E
Sbjct  62   --------------------KLSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIE  101

Query  422  GPFG  425
            GP+G
Sbjct  102  GPYG  105



Lambda      K        H        a         alpha
   0.326    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 772619276


Query= TCONS_00017018

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  56.9    2e-11


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 56.9 bits (138),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 23/54 (43%), Positives = 32/54 (59%), Gaps = 0/54 (0%)

Query  147  AGHLAVMNSPVLVLSAGRNNPLIPLLGIPFDTFNFLHRWVGRVMIAGALIHMGC  200
             G LA+   P+L+L A RNNPL  L G+ +D     HRW+GR+    AL+H+  
Sbjct  1    LGILALALLPLLLLLALRNNPLEWLTGLSYDRLLLFHRWLGRLAFLLALLHVIL  54



Lambda      K        H        a         alpha
   0.330    0.144    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00010181

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  99.7    1e-25
CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               67.0    3e-14


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 99.7 bits (249),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 69/122 (57%), Gaps = 1/122 (1%)

Query  147  AGHLAVMNSPVLVLSAGRNNPLIPLLGIPFDTFNFLHRWVGRVMIAGALIHMGCVIGAQA  206
             G LA+   P+L+L A RNNPL  L G+ +D     HRW+GR+    AL+H+   +    
Sbjct  1    LGILALALLPLLLLLALRNNPLEWLTGLSYDRLLLFHRWLGRLAFLLALLHVILYLI-YW  59

Query  207  MQVSMDAITKELWSQPFYVYGMIALIAFVVIFFQSVSPIRHAFYEAFLHFHIFLAIMAFV  266
            ++ S++ I   L  +P+ + G+IAL+  V++   S+ P R   YE FL+ HI LA+   +
Sbjct  60   LRFSLEGILDLLLKRPYNILGIIALVLLVLLAITSLPPFRRLSYELFLYLHILLAVAFLL  119

Query  267  GL  268
             +
Sbjct  120  LV  121


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 67.0 bits (164),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 52/124 (42%), Gaps = 34/124 (27%)

Query  311  ATVELLPGDVARVEVAVSRP---WKFKAGQYMYLYI-PSLGLWTSHPFSVAWTSSDRMTT  366
            A V LLP +V  +++ VS+P   +K+K GQYM++   P L    SHPF++    SD    
Sbjct  7    AKVALLPDNV--LKLRVSKPKKPFKYKPGQYMFINFLPPLSFLQSHPFTITSAPSDD---  61

Query  367  NKKRDSSDSFNVLLGGRQRTTMSFLIKRRDGFTNKLLTKVHRSEAGRFN-----ATALAE  421
                                 +S  IK + G+T KL   +  S              L E
Sbjct  62   --------------------KLSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIE  101

Query  422  GPFG  425
            GP+G
Sbjct  102  GPYG  105



Lambda      K        H        a         alpha
   0.329    0.141    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00010180

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               67.7    2e-15


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 67.7 bits (166),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 52/124 (42%), Gaps = 34/124 (27%)

Query  49   ATVELLPGDVARVEVAVSRP---WKFKAGQYMYLYI-PSLGLWTSHPFSVAWTSSDRMTT  104
            A V LLP +V  +++ VS+P   +K+K GQYM++   P L    SHPF++    SD    
Sbjct  7    AKVALLPDNV--LKLRVSKPKKPFKYKPGQYMFINFLPPLSFLQSHPFTITSAPSDD---  61

Query  105  NKKRDSSDSFNVLLGGRQRTTMSFLIKRRDGFTNKLLTKVHRSEAGRFN-----ATALAE  159
                                 +S  IK + G+T KL   +  S              L E
Sbjct  62   --------------------KLSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIE  101

Query  160  GPFG  163
            GP+G
Sbjct  102  GPYG  105



Lambda      K        H        a         alpha
   0.325    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00017019

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00010185

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  105     1e-27
CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding...  74.7    2e-16
CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               67.7    2e-14


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 105 bits (263),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 69/122 (57%), Gaps = 1/122 (1%)

Query  48   AGHLAVMNSPVLVLSAGRNNPLIPLLGIPFDTFNFLHRWVGRVMIAGALIHMGCVIGAQA  107
             G LA+   P+L+L A RNNPL  L G+ +D     HRW+GR+    AL+H+   +    
Sbjct  1    LGILALALLPLLLLLALRNNPLEWLTGLSYDRLLLFHRWLGRLAFLLALLHVILYLI-YW  59

Query  108  MQVSMDAITKELWSQPFYVYGMIALIAFVVIFFQSVSPIRHAFYEAFLHFHIFLAIMAFV  167
            ++ S++ I   L  +P+ + G+IAL+  V++   S+ P R   YE FL+ HI LA+   +
Sbjct  60   LRFSLEGILDLLLKRPYNILGIIALVLLVLLAITSLPPFRRLSYELFLYLHILLAVAFLL  119

Query  168  GL  169
             +
Sbjct  120  LV  121


>CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain. 
 
Length=149

 Score = 74.7 bits (184),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 40/168 (24%), Positives = 70/168 (42%), Gaps = 28/168 (17%)

Query  334  YGTVLLIAGGIGITPPLSYLHEFADGFSDRSMAVRRVTLVWVVRHLEHLDWIQPWMASLF  393
            Y  VLL+AGGIGITP +S L +   G   + +  +++   WVVR L  L+W +  +  L 
Sbjct  1    YENVLLVAGGIGITPFISILKDL--GNKSKKLKTKKIKFYWVVRDLSSLEWFKDVLNELE  58

Query  394  DHPAVEAPNERKQTSYFQLSKFSLTIQVYVT--------AKGYTTDEHLSNKSPWTKSPP  445
            +                 L + ++ I +Y+T        +    +     N         
Sbjct  59   E-----------------LKELNIEIHIYLTGEYEAEDASDQSDSSIRSENFDSLMNEVI  101

Query  446  STVSISIKHGKPSFAEVVEAEMEQQVGA-MAVSVCGPGGMGDDVRQAV  492
                +    G+P++ EV++   +Q     + V  CGP  + D++R  V
Sbjct  102  GVDFVEFHFGRPNWKEVLKDIAKQHPNGSIGVFSCGPPSLVDELRNLV  149


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 67.7 bits (166),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 52/124 (42%), Gaps = 34/124 (27%)

Query  212  ATVELLPGDVARVEVAVSRP---WKFKAGQYMYLYI-PSLGLWTSHPFSVAWTSSDRMTT  267
            A V LLP +V  +++ VS+P   +K+K GQYM++   P L    SHPF++    SD    
Sbjct  7    AKVALLPDNV--LKLRVSKPKKPFKYKPGQYMFINFLPPLSFLQSHPFTITSAPSDD---  61

Query  268  NKKRDSSDSFNVLLGGRQRTTMSFLIKRRDGFTNKLLTKVHRSEAGRFN-----ATALAE  322
                                 +S  IK + G+T KL   +  S              L E
Sbjct  62   --------------------KLSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIE  101

Query  323  GPFG  326
            GP+G
Sbjct  102  GPYG  105



Lambda      K        H        a         alpha
   0.325    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 634393654


Query= TCONS_00010184

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding...  74.7    1e-16
CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               67.4    2e-14


>CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain. 
 
Length=149

 Score = 74.7 bits (184),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 40/168 (24%), Positives = 70/168 (42%), Gaps = 28/168 (17%)

Query  223  YGTVLLIAGGIGITPPLSYLHEFADGFSDRSMAVRRVTLVWVVRHLEHLDWIQPWMASLF  282
            Y  VLL+AGGIGITP +S L +   G   + +  +++   WVVR L  L+W +  +  L 
Sbjct  1    YENVLLVAGGIGITPFISILKDL--GNKSKKLKTKKIKFYWVVRDLSSLEWFKDVLNELE  58

Query  283  DHPAVEAPNERKQTSYFQLSKFSLTIQVYVT--------AKGYTTDEHLSNKSPWTKSPP  334
            +                 L + ++ I +Y+T        +    +     N         
Sbjct  59   E-----------------LKELNIEIHIYLTGEYEAEDASDQSDSSIRSENFDSLMNEVI  101

Query  335  STVSISIKHGKPSFAEVVEAEMEQQVGA-MAVSVCGPGGMGDDVRQAV  381
                +    G+P++ EV++   +Q     + V  CGP  + D++R  V
Sbjct  102  GVDFVEFHFGRPNWKEVLKDIAKQHPNGSIGVFSCGPPSLVDELRNLV  149


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 67.4 bits (165),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 52/124 (42%), Gaps = 34/124 (27%)

Query  101  ATVELLPGDVARVEVAVSRP---WKFKAGQYMYLYI-PSLGLWTSHPFSVAWTSSDRMTT  156
            A V LLP +V  +++ VS+P   +K+K GQYM++   P L    SHPF++    SD    
Sbjct  7    AKVALLPDNV--LKLRVSKPKKPFKYKPGQYMFINFLPPLSFLQSHPFTITSAPSDD---  61

Query  157  NKKRDSSDSFNVLLGGRQRTTMSFLIKRRDGFTNKLLTKVHRSEAGRFN-----ATALAE  211
                                 +S  IK + G+T KL   +  S              L E
Sbjct  62   --------------------KLSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIE  101

Query  212  GPFG  215
            GP+G
Sbjct  102  GPYG  105



Lambda      K        H        a         alpha
   0.323    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 481536020


Query= TCONS_00010183

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               66.6    1e-14


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 66.6 bits (163),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 52/124 (42%), Gaps = 34/124 (27%)

Query  101  ATVELLPGDVARVEVAVSRP---WKFKAGQYMYLYI-PSLGLWTSHPFSVAWTSSDRMTT  156
            A V LLP +V  +++ VS+P   +K+K GQYM++   P L    SHPF++    SD    
Sbjct  7    AKVALLPDNV--LKLRVSKPKKPFKYKPGQYMFINFLPPLSFLQSHPFTITSAPSDD---  61

Query  157  NKKRDSSDSFNVLLGGRQRTTMSFLIKRRDGFTNKLLTKVHRSEAGRFN-----ATALAE  211
                                 +S  IK + G+T KL   +  S              L E
Sbjct  62   --------------------KLSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIE  101

Query  212  GPFG  215
            GP+G
Sbjct  102  GPYG  105



Lambda      K        H        a         alpha
   0.328    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00010182

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  98.1    7e-26


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 98.1 bits (245),  Expect = 7e-26, Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 69/122 (57%), Gaps = 1/122 (1%)

Query  147  AGHLAVMNSPVLVLSAGRNNPLIPLLGIPFDTFNFLHRWVGRVMIAGALIHMGCVIGAQA  206
             G LA+   P+L+L A RNNPL  L G+ +D     HRW+GR+    AL+H+   +    
Sbjct  1    LGILALALLPLLLLLALRNNPLEWLTGLSYDRLLLFHRWLGRLAFLLALLHVILYLI-YW  59

Query  207  MQVSMDAITKELWSQPFYVYGMIALIAFVVIFFQSVSPIRHAFYEAFLHFHIFLAIMAFV  266
            ++ S++ I   L  +P+ + G+IAL+  V++   S+ P R   YE FL+ HI LA+   +
Sbjct  60   LRFSLEGILDLLLKRPYNILGIIALVLLVLLAITSLPPFRRLSYELFLYLHILLAVAFLL  119

Query  267  GL  268
             +
Sbjct  120  LV  121



Lambda      K        H        a         alpha
   0.330    0.143    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00017020

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding...  74.7    8e-17
CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               68.1    7e-15


>CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain. 
 
Length=149

 Score = 74.7 bits (184),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 40/168 (24%), Positives = 70/168 (42%), Gaps = 28/168 (17%)

Query  171  YGTVLLIAGGIGITPPLSYLHEFADGFSDRSMAVRRVTLVWVVRHLEHLDWIQPWMASLF  230
            Y  VLL+AGGIGITP +S L +   G   + +  +++   WVVR L  L+W +  +  L 
Sbjct  1    YENVLLVAGGIGITPFISILKDL--GNKSKKLKTKKIKFYWVVRDLSSLEWFKDVLNELE  58

Query  231  DHPAVEAPNERKQTSYFQLSKFSLTIQVYVT--------AKGYTTDEHLSNKSPWTKSPP  282
            +                 L + ++ I +Y+T        +    +     N         
Sbjct  59   E-----------------LKELNIEIHIYLTGEYEAEDASDQSDSSIRSENFDSLMNEVI  101

Query  283  STVSISIKHGKPSFAEVVEAEMEQQVGA-MAVSVCGPGGMGDDVRQAV  329
                +    G+P++ EV++   +Q     + V  CGP  + D++R  V
Sbjct  102  GVDFVEFHFGRPNWKEVLKDIAKQHPNGSIGVFSCGPPSLVDELRNLV  149


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 68.1 bits (167),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 52/124 (42%), Gaps = 34/124 (27%)

Query  49   ATVELLPGDVARVEVAVSRP---WKFKAGQYMYLYI-PSLGLWTSHPFSVAWTSSDRMTT  104
            A V LLP +V  +++ VS+P   +K+K GQYM++   P L    SHPF++    SD    
Sbjct  7    AKVALLPDNV--LKLRVSKPKKPFKYKPGQYMFINFLPPLSFLQSHPFTITSAPSDD---  61

Query  105  NKKRDSSDSFNVLLGGRQRTTMSFLIKRRDGFTNKLLTKVHRSEAGRFN-----ATALAE  159
                                 +S  IK + G+T KL   +  S              L E
Sbjct  62   --------------------KLSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIE  101

Query  160  GPFG  163
            GP+G
Sbjct  102  GPYG  105



Lambda      K        H        a         alpha
   0.321    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00017021

Length=271
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding...  74.3    4e-17


>CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain. 
 
Length=149

 Score = 74.3 bits (183),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 40/168 (24%), Positives = 70/168 (42%), Gaps = 28/168 (17%)

Query  95   YGTVLLIAGGIGITPPLSYLHEFADGFSDRSMAVRRVTLVWVVRHLEHLDWIQPWMASLF  154
            Y  VLL+AGGIGITP +S L +   G   + +  +++   WVVR L  L+W +  +  L 
Sbjct  1    YENVLLVAGGIGITPFISILKDL--GNKSKKLKTKKIKFYWVVRDLSSLEWFKDVLNELE  58

Query  155  DHPAVEAPNERKQTSYFQLSKFSLTIQVYVT--------AKGYTTDEHLSNKSPWTKSPP  206
            +                 L + ++ I +Y+T        +    +     N         
Sbjct  59   E-----------------LKELNIEIHIYLTGEYEAEDASDQSDSSIRSENFDSLMNEVI  101

Query  207  STVSISIKHGKPSFAEVVEAEMEQQVGA-MAVSVCGPGGMGDDVRQAV  253
                +    G+P++ EV++   +Q     + V  CGP  + D++R  V
Sbjct  102  GVDFVEFHFGRPNWKEVLKDIAKQHPNGSIGVFSCGPPSLVDELRNLV  149



Lambda      K        H        a         alpha
   0.319    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00010187

Length=271
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding...  74.3    4e-17


>CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain. 
 
Length=149

 Score = 74.3 bits (183),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 40/168 (24%), Positives = 70/168 (42%), Gaps = 28/168 (17%)

Query  95   YGTVLLIAGGIGITPPLSYLHEFADGFSDRSMAVRRVTLVWVVRHLEHLDWIQPWMASLF  154
            Y  VLL+AGGIGITP +S L +   G   + +  +++   WVVR L  L+W +  +  L 
Sbjct  1    YENVLLVAGGIGITPFISILKDL--GNKSKKLKTKKIKFYWVVRDLSSLEWFKDVLNELE  58

Query  155  DHPAVEAPNERKQTSYFQLSKFSLTIQVYVT--------AKGYTTDEHLSNKSPWTKSPP  206
            +                 L + ++ I +Y+T        +    +     N         
Sbjct  59   E-----------------LKELNIEIHIYLTGEYEAEDASDQSDSSIRSENFDSLMNEVI  101

Query  207  STVSISIKHGKPSFAEVVEAEMEQQVGA-MAVSVCGPGGMGDDVRQAV  253
                +    G+P++ EV++   +Q     + V  CGP  + D++R  V
Sbjct  102  GVDFVEFHFGRPNWKEVLKDIAKQHPNGSIGVFSCGPPSLVDELRNLV  149



Lambda      K        H        a         alpha
   0.319    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00010188

Length=571
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        73.1    5e-16
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          63.0    1e-12


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 73.1 bits (180),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 64/137 (47%), Gaps = 10/137 (7%)

Query  411  HIFSSRSTLFAKGIKLLTNNKGVDVVLNSLSSEGLIASWESIAPYGRFIEIGKNDILSNA  470
             +   R+T F +     T  +GVDVVL+++  E   AS   +   GR + IG   + +  
Sbjct  5    EVIDYRTTDFVQ----ATGGEGVDVVLDTVGGEAFEASLRVLPGGGRLVTIGGPPLSAG-  59

Query  471  KLPMLQFEQNITFAAVDLAAMTMDRPHVVTAALETILSLLREGKISLPDPLQVYGISDIE  530
               +L   +      V    + + RP++    L+ +  L+ EGK+  P   +V+ + +  
Sbjct  60   ---LLLPARKRGGRGVKYLFLFV-RPNLGADILQELADLIEEGKLR-PVIDRVFPLEEAA  114

Query  531  VAFRQMQSGKNSGKAVL  547
             A R ++SG+  GK VL
Sbjct  115  EAHRYLESGRARGKIVL  131


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 63.0 bits (154),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 31/92 (34%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query  372  GTGQAAIQIAQLLGASVFTTVSNENKKRFLVEKYNVPENHIFSSRSTLFAKGIKLLTNNK  431
            G G AAIQ+A+  GA V     +E K   L ++     +H+ + + T   + IK LT  K
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLE-LAKELGA--DHVINPKETDLVEEIKELTGGK  57

Query  432  GVDVVLNSLSS-EGLIASWESIAPYGRFIEIG  462
            GVDVV + + S   L  + + + P GR + +G
Sbjct  58   GVDVVFDCVGSPATLEQALKLLRPGGRVVVVG  89



Lambda      K        H        a         alpha
   0.317    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 715831012


Query= TCONS_00017022

Length=571
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        73.1    5e-16
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          63.0    1e-12


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 73.1 bits (180),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 64/137 (47%), Gaps = 10/137 (7%)

Query  411  HIFSSRSTLFAKGIKLLTNNKGVDVVLNSLSSEGLIASWESIAPYGRFIEIGKNDILSNA  470
             +   R+T F +     T  +GVDVVL+++  E   AS   +   GR + IG   + +  
Sbjct  5    EVIDYRTTDFVQ----ATGGEGVDVVLDTVGGEAFEASLRVLPGGGRLVTIGGPPLSAG-  59

Query  471  KLPMLQFEQNITFAAVDLAAMTMDRPHVVTAALETILSLLREGKISLPDPLQVYGISDIE  530
               +L   +      V    + + RP++    L+ +  L+ EGK+  P   +V+ + +  
Sbjct  60   ---LLLPARKRGGRGVKYLFLFV-RPNLGADILQELADLIEEGKLR-PVIDRVFPLEEAA  114

Query  531  VAFRQMQSGKNSGKAVL  547
             A R ++SG+  GK VL
Sbjct  115  EAHRYLESGRARGKIVL  131


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 63.0 bits (154),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 31/92 (34%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query  372  GTGQAAIQIAQLLGASVFTTVSNENKKRFLVEKYNVPENHIFSSRSTLFAKGIKLLTNNK  431
            G G AAIQ+A+  GA V     +E K   L ++     +H+ + + T   + IK LT  K
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLE-LAKELGA--DHVINPKETDLVEEIKELTGGK  57

Query  432  GVDVVLNSLSS-EGLIASWESIAPYGRFIEIG  462
            GVDVV + + S   L  + + + P GR + +G
Sbjct  58   GVDVVFDCVGSPATLEQALKLLRPGGRVVVVG  89



Lambda      K        H        a         alpha
   0.317    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 715831012


Query= TCONS_00010191

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      140     3e-39
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  86.1    5e-21
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  64.9    1e-12


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 140 bits (356),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 77/221 (35%), Positives = 110/221 (50%), Gaps = 45/221 (20%)

Query  5    RLSAPVCKVLRDGRVVSVPAESVVLGDVVHLTVGDIVPADLRLIDGTNVSMDEALLTGES  64
             L  P   VLRDG    VPA+ +V GD+V L  G+ VPAD R+++G+  S+DE+LLTGES
Sbjct  1    SLLPPTATVLRDGTEEEVPADELVPGDIVLLKPGERVPADGRIVEGSA-SVDESLLTGES  59

Query  65   LPVNKTPHIVLSSHNMPIGDRTNMAYSGCSMTQGRATGIVTATGMKTEVGRIAKLLQETS  124
            LPV K               + +M YSG  +  G A  +VTATG  TE+GRIA+L++E  
Sbjct  60   LPVEK--------------KKGDMVYSGTVVVSGSAKAVVTATGEDTELGRIARLVEE--  103

Query  125  DDADSSRLVQAVRRVKSTAENVLGLAGTPLQVKLSKFALLLFALAVLLAIIVF----SVN  180
              A S +                    TPLQ  L +       + +L+A+ VF     V 
Sbjct  104  --AKSKK--------------------TPLQRLLDRLGKYFSPVVLLIALAVFLLWLFVG  141

Query  181  KWDIEGEVLIYGIAIGVAVIPESLIAVLTITMAVGTKAMAK  221
               +    L+  +A+ VA  P +L     + +AVG + +AK
Sbjct  142  GPPLRA--LLRALAVLVAACPCALPLATPLALAVGARRLAK  180


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 86.1 bits (214),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 47/91 (52%), Gaps = 6/91 (7%)

Query  309  SLCNMSVVQNEEPSGPSSGRWTAVGEPTEVALNVLALRVGYEKSTILQRAGMQLHTEYPF  368
            +LCN +     E  G    +W  VG+PTE AL V A ++G +   +  R       E PF
Sbjct  1    ALCNSAAFDENEEKG----KWEIVGDPTESALLVFAEKMGIDVEEL--RKDYPRVAEIPF  54

Query  369  DSSIKRMTIVYKNSGESMNEVYTKGAPEAVL  399
            +S  KRM+ V+K   +    ++ KGAPE +L
Sbjct  55   NSDRKRMSTVHKLPDDGKYRLFVKGAPEIIL  85


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 64.9 bits (158),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 27/186 (15%)

Query  395  PEAVLPGLAISEKEKEEIQYEADRMAGEGLRVLCIAHKRAPLEDESQVSSRAMAEVNLEF  454
            P A     A  +       + A  + G   +   +            + +  +  V +E 
Sbjct  31   PLAKAIVAAAEDLPIPVEDFTARLLLG---KRDWLEELDILRGLVETLEAEGLTVVLVEL  87

Query  455  CGLVGLYDP--PRAETAAAVRKCQMAGITVHMLTGDHIKTATAIASEVGILGPMLDSRSC  512
             G++ L D        A A++  +  GI V +LTGD+ + A A+   +G+          
Sbjct  88   LGVIALADELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGL----------  137

Query  513  RVVMAAAEFDELSDADIDAIEQLPLVIARCSPATKVRMVEAMHRRGAFCVMTGDGVNDSP  572
                    FD +   D   +        +  P   +  +E +  +    +M GDGVND P
Sbjct  138  -----DDYFDVVISGDDVGV-------GKPKPEIYLAALERLGVKPEEVLMVGDGVNDIP  185

Query  573  ALKRAD  578
            A K A 
Sbjct  186  AAKAAG  191



Lambda      K        H        a         alpha
   0.318    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 796386600


Query= TCONS_00010189

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461110 pfam03959, FSH1, Serine hydrolase (FSH1). This is a fa...  69.6    3e-15


>CDD:461110 pfam03959, FSH1, Serine hydrolase (FSH1).  This is a family of 
serine hydrolases.
Length=208

 Score = 69.6 bits (171),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 83/200 (42%), Gaps = 39/200 (20%)

Query  1    MQTAAIRYELADSHV-YDFVEGIIP------WSMYPGVETIALDNEPVFAYFDDKDPQSG  53
             +T A+R  L    V + +++                 +    D+EP  A+F   D  + 
Sbjct  21   AKTGALRKLLKKLGVEFVYLDAPFELAEPADLPGSESEKDEGEDDEPYRAWFFGDDDTNE  80

Query  54   LVVYQ----HFEQHLRNEGPYDGVIAFSQAATM--ILTYLIYVFSRRNRGDEVDCP-FRF  106
             +       +   +++  GP+DG++ FSQ A +  IL  L+        G  +  P  +F
Sbjct  81   YLGLDESLDYVRDYIKENGPFDGILGFSQGAALAAILASLL------EEGLPLSHPPLKF  134

Query  107  AVLFSIVRP-PIDYEELQRGRFVEVDLGDVKDIVEIPTVHVWGAL----EESASQAAMAS  161
            A+LFS  RP P  Y+E              +D ++ P++HV G L     E  S+    +
Sbjct  135  AILFSGFRPRPPIYQEYY-----------SEDPIQTPSLHVIGELDTVVPEERSEK--LA  181

Query  162  DACRSDMKWTYVHDRGHEIP  181
            +AC++       H  GH +P
Sbjct  182  EACKNSPTV-LEHPGGHFVP  200



Lambda      K        H        a         alpha
   0.321    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00010190

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      140     3e-39
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  86.1    5e-21
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  64.9    1e-12


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 140 bits (356),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 77/221 (35%), Positives = 110/221 (50%), Gaps = 45/221 (20%)

Query  5    RLSAPVCKVLRDGRVVSVPAESVVLGDVVHLTVGDIVPADLRLIDGTNVSMDEALLTGES  64
             L  P   VLRDG    VPA+ +V GD+V L  G+ VPAD R+++G+  S+DE+LLTGES
Sbjct  1    SLLPPTATVLRDGTEEEVPADELVPGDIVLLKPGERVPADGRIVEGSA-SVDESLLTGES  59

Query  65   LPVNKTPHIVLSSHNMPIGDRTNMAYSGCSMTQGRATGIVTATGMKTEVGRIAKLLQETS  124
            LPV K               + +M YSG  +  G A  +VTATG  TE+GRIA+L++E  
Sbjct  60   LPVEK--------------KKGDMVYSGTVVVSGSAKAVVTATGEDTELGRIARLVEE--  103

Query  125  DDADSSRLVQAVRRVKSTAENVLGLAGTPLQVKLSKFALLLFALAVLLAIIVF----SVN  180
              A S +                    TPLQ  L +       + +L+A+ VF     V 
Sbjct  104  --AKSKK--------------------TPLQRLLDRLGKYFSPVVLLIALAVFLLWLFVG  141

Query  181  KWDIEGEVLIYGIAIGVAVIPESLIAVLTITMAVGTKAMAK  221
               +    L+  +A+ VA  P +L     + +AVG + +AK
Sbjct  142  GPPLRA--LLRALAVLVAACPCALPLATPLALAVGARRLAK  180


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 86.1 bits (214),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 47/91 (52%), Gaps = 6/91 (7%)

Query  309  SLCNMSVVQNEEPSGPSSGRWTAVGEPTEVALNVLALRVGYEKSTILQRAGMQLHTEYPF  368
            +LCN +     E  G    +W  VG+PTE AL V A ++G +   +  R       E PF
Sbjct  1    ALCNSAAFDENEEKG----KWEIVGDPTESALLVFAEKMGIDVEEL--RKDYPRVAEIPF  54

Query  369  DSSIKRMTIVYKNSGESMNEVYTKGAPEAVL  399
            +S  KRM+ V+K   +    ++ KGAPE +L
Sbjct  55   NSDRKRMSTVHKLPDDGKYRLFVKGAPEIIL  85


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 64.9 bits (158),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 27/186 (15%)

Query  395  PEAVLPGLAISEKEKEEIQYEADRMAGEGLRVLCIAHKRAPLEDESQVSSRAMAEVNLEF  454
            P A     A  +       + A  + G   +   +            + +  +  V +E 
Sbjct  31   PLAKAIVAAAEDLPIPVEDFTARLLLG---KRDWLEELDILRGLVETLEAEGLTVVLVEL  87

Query  455  CGLVGLYDP--PRAETAAAVRKCQMAGITVHMLTGDHIKTATAIASEVGILGPMLDSRSC  512
             G++ L D        A A++  +  GI V +LTGD+ + A A+   +G+          
Sbjct  88   LGVIALADELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGL----------  137

Query  513  RVVMAAAEFDELSDADIDAIEQLPLVIARCSPATKVRMVEAMHRRGAFCVMTGDGVNDSP  572
                    FD +   D   +        +  P   +  +E +  +    +M GDGVND P
Sbjct  138  -----DDYFDVVISGDDVGV-------GKPKPEIYLAALERLGVKPEEVLMVGDGVNDIP  185

Query  573  ALKRAD  578
            A K A 
Sbjct  186  AAKAAG  191



Lambda      K        H        a         alpha
   0.318    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 796386600


Query= TCONS_00017023

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00010192

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      140     3e-39
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  86.1    5e-21
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  64.9    1e-12


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 140 bits (356),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 77/221 (35%), Positives = 110/221 (50%), Gaps = 45/221 (20%)

Query  5    RLSAPVCKVLRDGRVVSVPAESVVLGDVVHLTVGDIVPADLRLIDGTNVSMDEALLTGES  64
             L  P   VLRDG    VPA+ +V GD+V L  G+ VPAD R+++G+  S+DE+LLTGES
Sbjct  1    SLLPPTATVLRDGTEEEVPADELVPGDIVLLKPGERVPADGRIVEGSA-SVDESLLTGES  59

Query  65   LPVNKTPHIVLSSHNMPIGDRTNMAYSGCSMTQGRATGIVTATGMKTEVGRIAKLLQETS  124
            LPV K               + +M YSG  +  G A  +VTATG  TE+GRIA+L++E  
Sbjct  60   LPVEK--------------KKGDMVYSGTVVVSGSAKAVVTATGEDTELGRIARLVEE--  103

Query  125  DDADSSRLVQAVRRVKSTAENVLGLAGTPLQVKLSKFALLLFALAVLLAIIVF----SVN  180
              A S +                    TPLQ  L +       + +L+A+ VF     V 
Sbjct  104  --AKSKK--------------------TPLQRLLDRLGKYFSPVVLLIALAVFLLWLFVG  141

Query  181  KWDIEGEVLIYGIAIGVAVIPESLIAVLTITMAVGTKAMAK  221
               +    L+  +A+ VA  P +L     + +AVG + +AK
Sbjct  142  GPPLRA--LLRALAVLVAACPCALPLATPLALAVGARRLAK  180


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 86.1 bits (214),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 47/91 (52%), Gaps = 6/91 (7%)

Query  309  SLCNMSVVQNEEPSGPSSGRWTAVGEPTEVALNVLALRVGYEKSTILQRAGMQLHTEYPF  368
            +LCN +     E  G    +W  VG+PTE AL V A ++G +   +  R       E PF
Sbjct  1    ALCNSAAFDENEEKG----KWEIVGDPTESALLVFAEKMGIDVEEL--RKDYPRVAEIPF  54

Query  369  DSSIKRMTIVYKNSGESMNEVYTKGAPEAVL  399
            +S  KRM+ V+K   +    ++ KGAPE +L
Sbjct  55   NSDRKRMSTVHKLPDDGKYRLFVKGAPEIIL  85


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 64.9 bits (158),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 27/186 (15%)

Query  395  PEAVLPGLAISEKEKEEIQYEADRMAGEGLRVLCIAHKRAPLEDESQVSSRAMAEVNLEF  454
            P A     A  +       + A  + G   +   +            + +  +  V +E 
Sbjct  31   PLAKAIVAAAEDLPIPVEDFTARLLLG---KRDWLEELDILRGLVETLEAEGLTVVLVEL  87

Query  455  CGLVGLYDP--PRAETAAAVRKCQMAGITVHMLTGDHIKTATAIASEVGILGPMLDSRSC  512
             G++ L D        A A++  +  GI V +LTGD+ + A A+   +G+          
Sbjct  88   LGVIALADELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGL----------  137

Query  513  RVVMAAAEFDELSDADIDAIEQLPLVIARCSPATKVRMVEAMHRRGAFCVMTGDGVNDSP  572
                    FD +   D   +        +  P   +  +E +  +    +M GDGVND P
Sbjct  138  -----DDYFDVVISGDDVGV-------GKPKPEIYLAALERLGVKPEEVLMVGDGVNDIP  185

Query  573  ALKRAD  578
            A K A 
Sbjct  186  AAKAAG  191



Lambda      K        H        a         alpha
   0.318    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 796386600


Query= TCONS_00010193

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00010194

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00017024

Length=657
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:437975 pfam20143, NAD_kinase_C, ATP-NAD kinase C-terminal dom...  150     1e-43
CDD:426300 pfam01513, NAD_kinase, ATP-NAD kinase. Members of this...  105     2e-27


>CDD:437975 pfam20143, NAD_kinase_C, ATP-NAD kinase C-terminal domain.  Members 
of this family include ATP-NAD kinases EC:2.7.1.23, which 
catalyses the phosphorylation of NAD to NADP utilising 
ATP and other nucleoside triphosphates as well as inorganic 
polyphosphate as a source of phosphorus. Also includes NADH 
kinases EC:2.7.1.86. This entry represents the C-terminal beta 
sandwich domain.
Length=125

 Score = 150 bits (382),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 62/126 (49%), Positives = 78/126 (62%), Gaps = 2/126 (2%)

Query  450  LNELVIDRGPSPYVSNLELYADNDLLTVVQADGCIFSTPTGSTAYSLSAGGSLIHPSIPG  509
            LNE+V  RGP   +   ELY D +LL V +ADG I STPTGSTAYSLSAGG +I P +  
Sbjct  1    LNEVVYVRGPGATMIEFELYVDGELLGVDRADGLIVSTPTGSTAYSLSAGGPIISPRVLA  60

Query  510  ILLTPICPHTLSFRPMVLSDSLLLRIAVPTGSRSSAYCSFDGKGRVELRQGDYVTVEASQ  569
            IL+ PICPH+LS RP+V+S S  LRI V + +   A    DG   +++  GD V V  S 
Sbjct  61   ILIVPICPHSLSSRPIVVSSSSKLRIRVLSRAE--ALLVDDGDPELDISPGDRVRVRKSY  118

Query  570  YPFPTV  575
            Y    +
Sbjct  119  YKAKFI  124


>CDD:426300 pfam01513, NAD_kinase, ATP-NAD kinase.  Members of this family 
include ATP-NAD kinases EC:2.7.1.23, which catalyzes the phosphorylation 
of NAD to NADP utilising ATP and other nucleoside 
triphosphates as well as inorganic polyphosphate as a source 
of phosphorus. Also includes NADH kinases EC:2.7.1.86.
Length=128

 Score = 105 bits (264),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 41/133 (31%), Positives = 59/133 (44%), Gaps = 6/133 (5%)

Query  278  VMIVTKARDNRLVYLTRELAEWLLSTPRYGSDLGVNVWVDSKLRNSKRFDAAGLLQSEPR  337
            V IV        +   RE+A WLL         G+ V V+ K+  S  F A    +    
Sbjct  1    VGIVVNPDKKEALERAREVARWLLDRL------GITVTVEEKMGESLAFAAGDRPEVIGC  54

Query  338  FEQMLHYWTPDLCWAAPEKFDLVLTLGGDGTVLFTSWLFQRIVPPVLCFSLGSLGFLTNF  397
             ++++          A    DL++ LGGDGT L  + L Q+ V P+L  + G LGFLT F
Sbjct  55   LKKVVDDTRRATRAFADAGVDLIIVLGGDGTALRAARLLQKAVIPILGVNTGVLGFLTEF  114

Query  398  EFENYKSHLNDVM  410
            E E     L  ++
Sbjct  115  EPEAAFELLERLL  127



Lambda      K        H        a         alpha
   0.314    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 831781560


Query= TCONS_00017025

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  253     8e-84


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 253 bits (649),  Expect = 8e-84, Method: Composition-based stats.
 Identities = 109/320 (34%), Positives = 169/320 (53%), Gaps = 30/320 (9%)

Query  16   ICVGCMSYGSPEKRFDWALGEEDALPVLDHAYRSGLNFFDTANVYSNGDSEVILGKAIKK  75
            I +G    G           +E+AL  L  A  +G+NF DTA VY +G SE +LG+A+K 
Sbjct  1    IGLGTWQLGGGWGPIS----KEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKD  56

Query  76   YNWRRENIVIATKVWAPVGRDKEYPLFLSNEERDNAGYVNEYGLSRKHIFDSIEASLKRL  135
            Y  +R+ +VIATKV    G                       G S+++I  S+E SLKRL
Sbjct  57   YPVKRDKVVIATKVPDGDG-------------------PWPSGGSKENIRKSLEESLKRL  97

Query  136  DLPYVDLLQIHRFDPNTPVKETMEALHDVVKSGKVRYIGASSMWAHQLLEYQYTARMNGW  195
               Y+DL  +H  DP+TP++ET +AL ++ K GK+R IG S+ +  + +E    A   G 
Sbjct  98   GTDYIDLYYLHWPDPDTPIEETWDALEELKKEGKIRAIGVSN-FDAEQIEK---ALTKGK  153

Query  196  TEFISMQNFHNPIYREEEREMFPACAKFGMGAIPWSPLAMGFLTRPWKAFEETTRGKSLN  255
               +++Q  +N + R +E E+   C K G+  I +SPL  G LT     +          
Sbjct  154  IPIVAVQVEYNLLRRRQEEELLEYCKKNGIPLIAYSPLGGGLLT---GKYTRDPDKGPGE  210

Query  256  GKVMGQPFTETDKKISETIEEIANKRGVSMTIVSLAWSLSKPFITAPIVGLSKKERVDEA  315
             + + +  T  + +  E +EEIA + GVS   V+L W+LSKP +T PI G S  E++++ 
Sbjct  211  RRRLLKKGTPLNLEALEALEEIAKEHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDN  270

Query  316  IQAIDFKLTEEEIKSIDDLY  335
            + A++F L++EE+  ID+L 
Sbjct  271  LGALEFPLSDEEVARIDELL  290



Lambda      K        H        a         alpha
   0.318    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00010198

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  253     8e-84


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 253 bits (649),  Expect = 8e-84, Method: Composition-based stats.
 Identities = 109/320 (34%), Positives = 169/320 (53%), Gaps = 30/320 (9%)

Query  16   ICVGCMSYGSPEKRFDWALGEEDALPVLDHAYRSGLNFFDTANVYSNGDSEVILGKAIKK  75
            I +G    G           +E+AL  L  A  +G+NF DTA VY +G SE +LG+A+K 
Sbjct  1    IGLGTWQLGGGWGPIS----KEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKD  56

Query  76   YNWRRENIVIATKVWAPVGRDKEYPLFLSNEERDNAGYVNEYGLSRKHIFDSIEASLKRL  135
            Y  +R+ +VIATKV    G                       G S+++I  S+E SLKRL
Sbjct  57   YPVKRDKVVIATKVPDGDG-------------------PWPSGGSKENIRKSLEESLKRL  97

Query  136  DLPYVDLLQIHRFDPNTPVKETMEALHDVVKSGKVRYIGASSMWAHQLLEYQYTARMNGW  195
               Y+DL  +H  DP+TP++ET +AL ++ K GK+R IG S+ +  + +E    A   G 
Sbjct  98   GTDYIDLYYLHWPDPDTPIEETWDALEELKKEGKIRAIGVSN-FDAEQIEK---ALTKGK  153

Query  196  TEFISMQNFHNPIYREEEREMFPACAKFGMGAIPWSPLAMGFLTRPWKAFEETTRGKSLN  255
               +++Q  +N + R +E E+   C K G+  I +SPL  G LT     +          
Sbjct  154  IPIVAVQVEYNLLRRRQEEELLEYCKKNGIPLIAYSPLGGGLLT---GKYTRDPDKGPGE  210

Query  256  GKVMGQPFTETDKKISETIEEIANKRGVSMTIVSLAWSLSKPFITAPIVGLSKKERVDEA  315
             + + +  T  + +  E +EEIA + GVS   V+L W+LSKP +T PI G S  E++++ 
Sbjct  211  RRRLLKKGTPLNLEALEALEEIAKEHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDN  270

Query  316  IQAIDFKLTEEEIKSIDDLY  335
            + A++F L++EE+  ID+L 
Sbjct  271  LGALEFPLSDEEVARIDELL  290



Lambda      K        H        a         alpha
   0.318    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00010199

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  253     8e-84


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 253 bits (649),  Expect = 8e-84, Method: Composition-based stats.
 Identities = 109/320 (34%), Positives = 169/320 (53%), Gaps = 30/320 (9%)

Query  16   ICVGCMSYGSPEKRFDWALGEEDALPVLDHAYRSGLNFFDTANVYSNGDSEVILGKAIKK  75
            I +G    G           +E+AL  L  A  +G+NF DTA VY +G SE +LG+A+K 
Sbjct  1    IGLGTWQLGGGWGPIS----KEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKD  56

Query  76   YNWRRENIVIATKVWAPVGRDKEYPLFLSNEERDNAGYVNEYGLSRKHIFDSIEASLKRL  135
            Y  +R+ +VIATKV    G                       G S+++I  S+E SLKRL
Sbjct  57   YPVKRDKVVIATKVPDGDG-------------------PWPSGGSKENIRKSLEESLKRL  97

Query  136  DLPYVDLLQIHRFDPNTPVKETMEALHDVVKSGKVRYIGASSMWAHQLLEYQYTARMNGW  195
               Y+DL  +H  DP+TP++ET +AL ++ K GK+R IG S+ +  + +E    A   G 
Sbjct  98   GTDYIDLYYLHWPDPDTPIEETWDALEELKKEGKIRAIGVSN-FDAEQIEK---ALTKGK  153

Query  196  TEFISMQNFHNPIYREEEREMFPACAKFGMGAIPWSPLAMGFLTRPWKAFEETTRGKSLN  255
               +++Q  +N + R +E E+   C K G+  I +SPL  G LT     +          
Sbjct  154  IPIVAVQVEYNLLRRRQEEELLEYCKKNGIPLIAYSPLGGGLLT---GKYTRDPDKGPGE  210

Query  256  GKVMGQPFTETDKKISETIEEIANKRGVSMTIVSLAWSLSKPFITAPIVGLSKKERVDEA  315
             + + +  T  + +  E +EEIA + GVS   V+L W+LSKP +T PI G S  E++++ 
Sbjct  211  RRRLLKKGTPLNLEALEALEEIAKEHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDN  270

Query  316  IQAIDFKLTEEEIKSIDDLY  335
            + A++F L++EE+  ID+L 
Sbjct  271  LGALEFPLSDEEVARIDELL  290



Lambda      K        H        a         alpha
   0.318    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00010201

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  253     8e-84


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 253 bits (649),  Expect = 8e-84, Method: Composition-based stats.
 Identities = 109/320 (34%), Positives = 169/320 (53%), Gaps = 30/320 (9%)

Query  16   ICVGCMSYGSPEKRFDWALGEEDALPVLDHAYRSGLNFFDTANVYSNGDSEVILGKAIKK  75
            I +G    G           +E+AL  L  A  +G+NF DTA VY +G SE +LG+A+K 
Sbjct  1    IGLGTWQLGGGWGPIS----KEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKD  56

Query  76   YNWRRENIVIATKVWAPVGRDKEYPLFLSNEERDNAGYVNEYGLSRKHIFDSIEASLKRL  135
            Y  +R+ +VIATKV    G                       G S+++I  S+E SLKRL
Sbjct  57   YPVKRDKVVIATKVPDGDG-------------------PWPSGGSKENIRKSLEESLKRL  97

Query  136  DLPYVDLLQIHRFDPNTPVKETMEALHDVVKSGKVRYIGASSMWAHQLLEYQYTARMNGW  195
               Y+DL  +H  DP+TP++ET +AL ++ K GK+R IG S+ +  + +E    A   G 
Sbjct  98   GTDYIDLYYLHWPDPDTPIEETWDALEELKKEGKIRAIGVSN-FDAEQIEK---ALTKGK  153

Query  196  TEFISMQNFHNPIYREEEREMFPACAKFGMGAIPWSPLAMGFLTRPWKAFEETTRGKSLN  255
               +++Q  +N + R +E E+   C K G+  I +SPL  G LT     +          
Sbjct  154  IPIVAVQVEYNLLRRRQEEELLEYCKKNGIPLIAYSPLGGGLLT---GKYTRDPDKGPGE  210

Query  256  GKVMGQPFTETDKKISETIEEIANKRGVSMTIVSLAWSLSKPFITAPIVGLSKKERVDEA  315
             + + +  T  + +  E +EEIA + GVS   V+L W+LSKP +T PI G S  E++++ 
Sbjct  211  RRRLLKKGTPLNLEALEALEEIAKEHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDN  270

Query  316  IQAIDFKLTEEEIKSIDDLY  335
            + A++F L++EE+  ID+L 
Sbjct  271  LGALEFPLSDEEVARIDELL  290



Lambda      K        H        a         alpha
   0.318    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00010202

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  255     1e-84


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 255 bits (654),  Expect = 1e-84, Method: Composition-based stats.
 Identities = 108/310 (35%), Positives = 169/310 (55%), Gaps = 20/310 (6%)

Query  16   ICVGCMSYGSPEKRFDWALGEEDALPVLDHAYRSGLNFFDTANVYSNGDSEVILGKAIKK  75
            I +G    G           +E+AL  L  A  +G+NF DTA VY +G SE +LG+A+K 
Sbjct  1    IGLGTWQLGGGWGPIS----KEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKD  56

Query  76   YNWRRENIVIATKYPLFLSNEERDNAGYVNEYGLSRKHIFDSIEASLKRLDLPYVDLLQI  135
            Y  +R+ +VIATK P         +       G S+++I  S+E SLKRL   Y+DL  +
Sbjct  57   YPVKRDKVVIATKVP---------DGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLYYL  107

Query  136  HRFDPNTPVKETMEALHDVVKSGKVRYIGASSMWAHQLLEYQYTARMNGWTEFISMQNFH  195
            H  DP+TP++ET +AL ++ K GK+R IG S+ +  + +E    A   G    +++Q  +
Sbjct  108  HWPDPDTPIEETWDALEELKKEGKIRAIGVSN-FDAEQIEK---ALTKGKIPIVAVQVEY  163

Query  196  NPIYREEEREMFPACAKFGMGAIPWSPLAMGFLTRPWKAFEETTRGKSLNGKVMGQPFTE  255
            N + R +E E+   C K G+  I +SPL  G LT     +           + + +  T 
Sbjct  164  NLLRRRQEEELLEYCKKNGIPLIAYSPLGGGLLT---GKYTRDPDKGPGERRRLLKKGTP  220

Query  256  TDKKISETIEEIANKRGVSMTIVSLAWSLSKPFITAPIVGLSKKERVDEAIQAIDFKLTE  315
             + +  E +EEIA + GVS   V+L W+LSKP +T PI G S  E++++ + A++F L++
Sbjct  221  LNLEALEALEEIAKEHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLSD  280

Query  316  EEIKSIDDLY  325
            EE+  ID+L 
Sbjct  281  EEVARIDELL  290



Lambda      K        H        a         alpha
   0.318    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00010203

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.120    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00017026

Length=220
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        77.7    2e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 77.7 bits (192),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query  43   YKGFVAGVFSGIAKLSVGHPFDTVKVRLQTSKEGH---FKGPLDCVLQTVRKEGVSGLYK  99
                +AG  +G   ++V +P D VK RLQ          +G LDC  +  ++EG+ GLYK
Sbjct  6    LASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYK  65

Query  100  GATPPLVGWMVMDSVMLGSLTLYRRLLLEN  129
            G  P L+      ++  G+    +RLLL+ 
Sbjct  66   GLLPNLLRVAPAAAIYFGTYETLKRLLLKK  95



Lambda      K        H        a         alpha
   0.319    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00017028

Length=382


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.121    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00017027

Length=388


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.122    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00017029

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        77.7    2e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 77.7 bits (192),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query  43   YKGFVAGVFSGIAKLSVGHPFDTVKVRLQTSKEGH---FKGPLDCVLQTVRKEGVSGLYK  99
                +AG  +G   ++V +P D VK RLQ          +G LDC  +  ++EG+ GLYK
Sbjct  6    LASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYK  65

Query  100  GATPPLVGWMVMDSVMLGSLTLYRRLLLEN  129
            G  P L+      ++  G+    +RLLL+ 
Sbjct  66   GLLPNLLRVAPAAAIYFGTYETLKRLLLKK  95



Lambda      K        H        a         alpha
   0.319    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00010206

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427303 pfam03452, Anp1, Anp1. The members of this family (Anp...  441     2e-157


>CDD:427303 pfam03452, Anp1, Anp1.  The members of this family (Anp1, Van1 
and Mnn9) are membrane proteins required for proper Golgi 
function. These proteins co-localize within the cis Golgi, and 
that they are physically associated in two distinct complexes.
Length=265

 Score = 441 bits (1138),  Expect = 2e-157, Method: Composition-based stats.
 Identities = 160/270 (59%), Positives = 202/270 (75%), Gaps = 9/270 (3%)

Query  87   PVVQYNLNQLSSTSTSAANGERILILTPM---ARFVPEYWDNVVKLTYPHELISIGFIIP  143
             V  Y+LN L+ST+ +A N ER+LILTP+   ARF+PEY+DN++ LTYPHELIS+GF++ 
Sbjct  1    TVEHYDLNNLTSTADAAENKERVLILTPLRNAARFLPEYFDNLLNLTYPHELISLGFLVS  60

Query  144  KNKEGNAALAALEAAIAKTQS-GPIDKRFASISILRQDFEPPLQSQDEKERHKISNQKAR  202
               EG+  LAALEAA+ K QS G  DKRF SI+ILR+DF  P  SQDE +RH    QK R
Sbjct  61   DTSEGDDTLAALEAALKKLQSHGDKDKRFRSITILRKDFGQP-ISQDESDRHAFEVQKPR  119

Query  203  RESMSRARNSLLFTTLGPATAWVLWLDADIVETPPTLIQDLTAHDHPVLVPNCYQRYYNS  262
            R+ M+RARN LLF+ L P  +WVLWLDADIVETPPTLIQDL AHD  V+VPN ++RY + 
Sbjct  120  RKLMARARNWLLFSALKPEHSWVLWLDADIVETPPTLIQDLMAHDKDVIVPNVWRRYPDL  179

Query  263  EKKKMDVRPYDYNSWIDSSTAQSMAAEMGPDEILLEGYAEMPTYRTLMAHLADTANPNPK  322
            + K    RPYD NSW +S TA  +A ++  D+I++EGYAE PTYR  MA++ D  N +P 
Sbjct  180  DGK---ERPYDLNSWQESDTALELAKKLDEDDIIVEGYAEYPTYRPHMAYMRD-PNGDPD  235

Query  323  KVIELDGVGGTALMVKAEVHRDGAMFPAFP  352
            + +ELDGVGG +L+VKA+VHRDGAMFPAFP
Sbjct  236  EEMELDGVGGVSLLVKADVHRDGAMFPAFP  265



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00010208

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427303 pfam03452, Anp1, Anp1. The members of this family (Anp...  441     2e-157


>CDD:427303 pfam03452, Anp1, Anp1.  The members of this family (Anp1, Van1 
and Mnn9) are membrane proteins required for proper Golgi 
function. These proteins co-localize within the cis Golgi, and 
that they are physically associated in two distinct complexes.
Length=265

 Score = 441 bits (1138),  Expect = 2e-157, Method: Composition-based stats.
 Identities = 160/270 (59%), Positives = 202/270 (75%), Gaps = 9/270 (3%)

Query  87   PVVQYNLNQLSSTSTSAANGERILILTPM---ARFVPEYWDNVVKLTYPHELISIGFIIP  143
             V  Y+LN L+ST+ +A N ER+LILTP+   ARF+PEY+DN++ LTYPHELIS+GF++ 
Sbjct  1    TVEHYDLNNLTSTADAAENKERVLILTPLRNAARFLPEYFDNLLNLTYPHELISLGFLVS  60

Query  144  KNKEGNAALAALEAAIAKTQS-GPIDKRFASISILRQDFEPPLQSQDEKERHKISNQKAR  202
               EG+  LAALEAA+ K QS G  DKRF SI+ILR+DF  P  SQDE +RH    QK R
Sbjct  61   DTSEGDDTLAALEAALKKLQSHGDKDKRFRSITILRKDFGQP-ISQDESDRHAFEVQKPR  119

Query  203  RESMSRARNSLLFTTLGPATAWVLWLDADIVETPPTLIQDLTAHDHPVLVPNCYQRYYNS  262
            R+ M+RARN LLF+ L P  +WVLWLDADIVETPPTLIQDL AHD  V+VPN ++RY + 
Sbjct  120  RKLMARARNWLLFSALKPEHSWVLWLDADIVETPPTLIQDLMAHDKDVIVPNVWRRYPDL  179

Query  263  EKKKMDVRPYDYNSWIDSSTAQSMAAEMGPDEILLEGYAEMPTYRTLMAHLADTANPNPK  322
            + K    RPYD NSW +S TA  +A ++  D+I++EGYAE PTYR  MA++ D  N +P 
Sbjct  180  DGK---ERPYDLNSWQESDTALELAKKLDEDDIIVEGYAEYPTYRPHMAYMRD-PNGDPD  235

Query  323  KVIELDGVGGTALMVKAEVHRDGAMFPAFP  352
            + +ELDGVGG +L+VKA+VHRDGAMFPAFP
Sbjct  236  EEMELDGVGGVSLLVKADVHRDGAMFPAFP  265



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00010209

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        68.1    1e-15


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 68.1 bits (167),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 47/91 (52%), Gaps = 5/91 (5%)

Query  144  KTLPSFGHGIAGILAGTTVSFVAAPVEHIKARLQIQYAADKSKRMYSGPIDCLTKLLRAH  203
              L      +AG +AG     V  P++ +K RLQ+Q  + KSK    G +DC  K+ +  
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSK--GRGILDCFKKIYKEE  58

Query  204  GIAGVYRGLCATILFRSF--FFFWWGSYDVL  232
            GI G+Y+GL   +L R       ++G+Y+ L
Sbjct  59   GIRGLYKGLLPNLL-RVAPAAAIYFGTYETL  88


 Score = 65.8 bits (161),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query  43   YKGFVAGVFSGIAN------FDTVKVRLQTSKEGH---FKGPLDCVLQTVRKEGVSGLYK  93
                +AG  +G          D VK RLQ          +G LDC  +  ++EG+ GLYK
Sbjct  6    LASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYK  65

Query  94   GATPPLVGWMVMDSVMLGSLTLYRRLLLEN  123
            G  P L+      ++  G+    +RLLL+ 
Sbjct  66   GLLPNLLRVAPAAAIYFGTYETLKRLLLKK  95



Lambda      K        H        a         alpha
   0.322    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00017030

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427303 pfam03452, Anp1, Anp1. The members of this family (Anp...  441     2e-157


>CDD:427303 pfam03452, Anp1, Anp1.  The members of this family (Anp1, Van1 
and Mnn9) are membrane proteins required for proper Golgi 
function. These proteins co-localize within the cis Golgi, and 
that they are physically associated in two distinct complexes.
Length=265

 Score = 441 bits (1138),  Expect = 2e-157, Method: Composition-based stats.
 Identities = 160/270 (59%), Positives = 202/270 (75%), Gaps = 9/270 (3%)

Query  87   PVVQYNLNQLSSTSTSAANGERILILTPM---ARFVPEYWDNVVKLTYPHELISIGFIIP  143
             V  Y+LN L+ST+ +A N ER+LILTP+   ARF+PEY+DN++ LTYPHELIS+GF++ 
Sbjct  1    TVEHYDLNNLTSTADAAENKERVLILTPLRNAARFLPEYFDNLLNLTYPHELISLGFLVS  60

Query  144  KNKEGNAALAALEAAIAKTQS-GPIDKRFASISILRQDFEPPLQSQDEKERHKISNQKAR  202
               EG+  LAALEAA+ K QS G  DKRF SI+ILR+DF  P  SQDE +RH    QK R
Sbjct  61   DTSEGDDTLAALEAALKKLQSHGDKDKRFRSITILRKDFGQP-ISQDESDRHAFEVQKPR  119

Query  203  RESMSRARNSLLFTTLGPATAWVLWLDADIVETPPTLIQDLTAHDHPVLVPNCYQRYYNS  262
            R+ M+RARN LLF+ L P  +WVLWLDADIVETPPTLIQDL AHD  V+VPN ++RY + 
Sbjct  120  RKLMARARNWLLFSALKPEHSWVLWLDADIVETPPTLIQDLMAHDKDVIVPNVWRRYPDL  179

Query  263  EKKKMDVRPYDYNSWIDSSTAQSMAAEMGPDEILLEGYAEMPTYRTLMAHLADTANPNPK  322
            + K    RPYD NSW +S TA  +A ++  D+I++EGYAE PTYR  MA++ D  N +P 
Sbjct  180  DGK---ERPYDLNSWQESDTALELAKKLDEDDIIVEGYAEYPTYRPHMAYMRD-PNGDPD  235

Query  323  KVIELDGVGGTALMVKAEVHRDGAMFPAFP  352
            + +ELDGVGG +L+VKA+VHRDGAMFPAFP
Sbjct  236  EEMELDGVGGVSLLVKADVHRDGAMFPAFP  265



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00010211

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        70.0    9e-16


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 70.0 bits (172),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 31/98 (32%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query  129  KTLPSFGHGIAGILAGTTVSFVAAPVEHIKARLQIQYAADKSKRMYSGPIDCLTKLLRAH  188
              L      +AG +AG     V  P++ +K RLQ+Q  + KSK    G +DC  K+ +  
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSK--GRGILDCFKKIYKEE  58

Query  189  GIAGVYRGLCATILFRSF--FFFWWGSYDVLTRWMKNN  224
            GI G+Y+GL   +L R       ++G+Y+ L R +   
Sbjct  59   GIRGLYKGLLPNLL-RVAPAAAIYFGTYETLKRLLLKK  95


 Score = 68.8 bits (169),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query  230  PVINFWAGGISAQIFWLTSYPSDVVKQRLMTDPMGGSLGDGERKFYRWKDAARAVYLERG  289
             + +  AGGI+  I    +YP DVVK RL      G       K     D  + +Y E G
Sbjct  5    FLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGK-----SKGRGILDCFKKIYKEEG  59

Query  290  WRGYWRGFVPCFLRAFPANAMALVAFEGVMRSL  322
             RG ++G +P  LR  PA A+    +E + R L
Sbjct  60   IRGLYKGLLPNLLRVAPAAAIYFGTYETLKRLL  92



Lambda      K        H        a         alpha
   0.323    0.139    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00010212

Length=103
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        68.8    2e-17


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 68.8 bits (169),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query  10   PVINFWAGGISAQIFWLTSYPSDVVKQRLMTDPMGGSLGDGERKFYRWKDAARAVYLERG  69
             + +  AGGI+  I    +YP DVVK RL      G       K     D  + +Y E G
Sbjct  5    FLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGK-----SKGRGILDCFKKIYKEEG  59

Query  70   WRGYWRGFVPCFLRAFPANAMALVAFEGVMRSL  102
             RG ++G +P  LR  PA A+    +E + R L
Sbjct  60   IRGLYKGLLPNLLRVAPAAAIYFGTYETLKRLL  92



Lambda      K        H        a         alpha
   0.326    0.138    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00010213

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427303 pfam03452, Anp1, Anp1. The members of this family (Anp...  441     3e-157


>CDD:427303 pfam03452, Anp1, Anp1.  The members of this family (Anp1, Van1 
and Mnn9) are membrane proteins required for proper Golgi 
function. These proteins co-localize within the cis Golgi, and 
that they are physically associated in two distinct complexes.
Length=265

 Score = 441 bits (1136),  Expect = 3e-157, Method: Composition-based stats.
 Identities = 160/270 (59%), Positives = 202/270 (75%), Gaps = 9/270 (3%)

Query  87   PVVQYNLNQLSSTSTSAANGERILILTPM---ARFVPEYWDNVVKLTYPHELISIGFIIP  143
             V  Y+LN L+ST+ +A N ER+LILTP+   ARF+PEY+DN++ LTYPHELIS+GF++ 
Sbjct  1    TVEHYDLNNLTSTADAAENKERVLILTPLRNAARFLPEYFDNLLNLTYPHELISLGFLVS  60

Query  144  KNKEGNAALAALEAAIAKTQS-GPIDKRFASISILRQDFEPPLQSQDEKERHKISNQKAR  202
               EG+  LAALEAA+ K QS G  DKRF SI+ILR+DF  P  SQDE +RH    QK R
Sbjct  61   DTSEGDDTLAALEAALKKLQSHGDKDKRFRSITILRKDFGQP-ISQDESDRHAFEVQKPR  119

Query  203  RESMSRARNSLLFTTLGPATAWVLWLDADIVETPPTLIQDLTAHDHPVLVPNCYQRYYNS  262
            R+ M+RARN LLF+ L P  +WVLWLDADIVETPPTLIQDL AHD  V+VPN ++RY + 
Sbjct  120  RKLMARARNWLLFSALKPEHSWVLWLDADIVETPPTLIQDLMAHDKDVIVPNVWRRYPDL  179

Query  263  EKKKMDVRPYDYNSWIDSSTAQSMAAEMGPDEILLEGYAEMPTYRTLMAHLADTANPNPK  322
            + K    RPYD NSW +S TA  +A ++  D+I++EGYAE PTYR  MA++ D  N +P 
Sbjct  180  DGK---ERPYDLNSWQESDTALELAKKLDEDDIIVEGYAEYPTYRPHMAYMRD-PNGDPD  235

Query  323  KVIELDGVGGTALMVKAEVHRDGAMFPAFP  352
            + +ELDGVGG +L+VKA+VHRDGAMFPAFP
Sbjct  236  EEMELDGVGGVSLLVKADVHRDGAMFPAFP  265



Lambda      K        H        a         alpha
   0.316    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00010215

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00010217

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00010218

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430599 pfam09420, Nop16, Ribosome biogenesis protein Nop16. N...  149     5e-47


>CDD:430599 pfam09420, Nop16, Ribosome biogenesis protein Nop16.  Nop16 is 
a protein involved in ribosome biogenesis.
Length=209

 Score = 149 bits (378),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 75/133 (56%), Positives = 91/133 (68%), Gaps = 16/133 (12%)

Query  1    MGETRVERDPETGKIIRVIRDEEEIEIAGRKVKPSNPLNDPLNELSEDEAARQPASQRTN  60
             GE R+ERD ETG I+RVI  +EE        +  NPL+DPLNEL  DE       +   
Sbjct  93   PGEARIERD-ETGNIVRVIYGKEE--------RKENPLDDPLNELDSDEED---EEEEEP  140

Query  61   AKSAVVQQLERQADQEGKAVKAKKPRHQSKREEEWIMRLIERHGENYSAMARDRKLNPMQ  120
             K+ VV++LE QA +     KAKK RH SKRE EW+ RL+E+HG++Y AMARDRKLNPMQ
Sbjct  141  KKTEVVRELEEQAARP----KAKKERHLSKREVEWLERLVEKHGDDYEAMARDRKLNPMQ  196

Query  121  QSEGDLKRRIRKW  133
            Q+EGDLKRRIRKW
Sbjct  197  QTEGDLKRRIRKW  209



Lambda      K        H        a         alpha
   0.309    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00010219

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.118    0.319    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00017031

Length=1443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  151     9e-42
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            71.8    6e-14


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 151 bits (383),  Expect = 9e-42, Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 123/302 (41%), Gaps = 90/302 (30%)

Query  1025  YEVLDVLGKGSFGQVVRCIDHKTGALVAVKIIRNKKR---FHQQALIEVNLLQKLKEWDP  1081
             YEVL  LG GSFG V +     TG +VA+K I+ +K      +  L E+ +L+KL     
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKL-----  55

Query  1082  HRRHS-VVNFTQSFYFRGHLCISTELL-GMNLYEFIKAHDFKGFSLKLIRRFTKQILGTL  1139
                H  +V    +F  + +L +  E + G +L++ +       FS +  +   KQIL  L
Sbjct  56    --NHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEK--GAFSEREAKFIMKQILEGL  111

Query  1140  TLLHTKKVIHCDLKPENILLVHPMSSEIRVIDFGSSCFENEKVYTYIQSRFYRSPEVILG  1199
                            E+                         + T++ + +Y +PEV+ G
Sbjct  112   ---------------ES----------------------GSSLTTFVGTPWYMAPEVLGG  134

Query  1200  MSYGMPIDMWSLGCILAELYSGYPIFPGENEQEQLACIMEVFGPPEKHLIEKSTRKKLFF  1259
               YG  +D+WSLGCIL EL +G P FPG N  E             + +I++        
Sbjct  135   NPYGPKVDVWSLGCILYELLTGKPPFPGINGNEI-----------YELIIDQPYAFPELP  183

Query  1260  DSLGKPRLTVSSKGRRRRPSSKDLKQVLKCDDDAFLDFISRCLRWDPARRLTPHDALRHE  1319
              +L                 S++ K           D + + L+ DP++RLT   AL+H 
Sbjct  184   SNL-----------------SEEAK-----------DLLKKLLKKDPSKRLTATQALQHP  215

Query  1320  FI  1321
             + 
Sbjct  216   WF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 71.8 bits (177),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 97/217 (45%), Gaps = 30/217 (14%)

Query  1028  LDVLGKGSFGQVVRCI----DHKTGALVAVKIIRNKKRFHQQA--LIEVNLLQKLKEWDP  1081
              + LG+G+FG+V +         T   VAVK ++      ++   L E ++++KL    P
Sbjct  4     GEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKLDH--P  61

Query  1082  HRRHSVVNF----TQSFYFRGHLCISTELL-GMNLYEFIKAHDFKGFSLKLIRRFTKQIL  1136
             +    +V      TQ       L I TE + G +L +F++ H  K  +LK +     QI 
Sbjct  62    N----IVKLLGVCTQG----EPLYIVTEYMPGGDLLDFLRKHKRK-LTLKDLLSMALQIA  112

Query  1137  GTLTLLHTKKVIHCDLKPENILLVHPMSSEIRVIDFGSSCFENEKVYTYIQSR-----FY  1191
               +  L +K  +H DL   N L+   +   +++ DFG S    +  Y   +        +
Sbjct  113   KGMEYLESKNFVHRDLAARNCLVSENL--VVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  1192  RSPEVILGMSYGMPIDMWSLGCILAELYS-GYPIFPG  1227
              +PE +    +    D+WS G +L E+++ G   +PG
Sbjct  171   MAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPG  207



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1823756928


Query= TCONS_00010220

Length=1441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  151     9e-42
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            71.8    6e-14


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 151 bits (383),  Expect = 9e-42, Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 123/302 (41%), Gaps = 90/302 (30%)

Query  1026  YEVLDVLGKGSFGQVVRCIDHKTGALVAVKIIRNKKR---FHQQALIEVNLLQKLKEWDP  1082
             YEVL  LG GSFG V +     TG +VA+K I+ +K      +  L E+ +L+KL     
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKL-----  55

Query  1083  HRRHS-VVNFTQSFYFRGHLCISTELL-GMNLYEFIKAHDFKGFSLKLIRRFTKQILGTL  1140
                H  +V    +F  + +L +  E + G +L++ +       FS +  +   KQIL  L
Sbjct  56    --NHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEK--GAFSEREAKFIMKQILEGL  111

Query  1141  TLLHTKKVIHCDLKPENILLVHPMSSEIRVIDFGSSCFENEKVYTYIQSRFYRSPEVILG  1200
                            E+                         + T++ + +Y +PEV+ G
Sbjct  112   ---------------ES----------------------GSSLTTFVGTPWYMAPEVLGG  134

Query  1201  MSYGMPIDMWSLGCILAELYSGYPIFPGENEQEQLACIMEVFGPPEKHLIEKSTRKKLFF  1260
               YG  +D+WSLGCIL EL +G P FPG N  E             + +I++        
Sbjct  135   NPYGPKVDVWSLGCILYELLTGKPPFPGINGNEI-----------YELIIDQPYAFPELP  183

Query  1261  DSLGKPRLTVSSKGRRRRPSSKDLKQVLKCDDDAFLDFISRCLRWDPARRLTPHDALRHE  1320
              +L                 S++ K           D + + L+ DP++RLT   AL+H 
Sbjct  184   SNL-----------------SEEAK-----------DLLKKLLKKDPSKRLTATQALQHP  215

Query  1321  FI  1322
             + 
Sbjct  216   WF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 71.8 bits (177),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 97/217 (45%), Gaps = 30/217 (14%)

Query  1029  LDVLGKGSFGQVVRCI----DHKTGALVAVKIIRNKKRFHQQA--LIEVNLLQKLKEWDP  1082
              + LG+G+FG+V +         T   VAVK ++      ++   L E ++++KL    P
Sbjct  4     GEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKLDH--P  61

Query  1083  HRRHSVVNF----TQSFYFRGHLCISTELL-GMNLYEFIKAHDFKGFSLKLIRRFTKQIL  1137
             +    +V      TQ       L I TE + G +L +F++ H  K  +LK +     QI 
Sbjct  62    N----IVKLLGVCTQG----EPLYIVTEYMPGGDLLDFLRKHKRK-LTLKDLLSMALQIA  112

Query  1138  GTLTLLHTKKVIHCDLKPENILLVHPMSSEIRVIDFGSSCFENEKVYTYIQSR-----FY  1192
               +  L +K  +H DL   N L+   +   +++ DFG S    +  Y   +        +
Sbjct  113   KGMEYLESKNFVHRDLAARNCLVSENL--VVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  1193  RSPEVILGMSYGMPIDMWSLGCILAELYS-GYPIFPG  1228
              +PE +    +    D+WS G +L E+++ G   +PG
Sbjct  171   MAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPG  207



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1821043004


Query= TCONS_00010221

Length=1374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  151     9e-42
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            71.8    5e-14


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 151 bits (383),  Expect = 9e-42, Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 123/302 (41%), Gaps = 90/302 (30%)

Query  956   YEVLDVLGKGSFGQVVRCIDHKTGALVAVKIIRNKKR---FHQQALIEVNLLQKLKEWDP  1012
             YEVL  LG GSFG V +     TG +VA+K I+ +K      +  L E+ +L+KL     
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKL-----  55

Query  1013  HRRHS-VVNFTQSFYFRGHLCISTELL-GMNLYEFIKAHDFKGFSLKLIRRFTKQILGTL  1070
                H  +V    +F  + +L +  E + G +L++ +       FS +  +   KQIL  L
Sbjct  56    --NHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEK--GAFSEREAKFIMKQILEGL  111

Query  1071  TLLHTKKVIHCDLKPENILLVHPMSSEIRVIDFGSSCFENEKVYTYIQSRFYRSPEVILG  1130
                            E+                         + T++ + +Y +PEV+ G
Sbjct  112   ---------------ES----------------------GSSLTTFVGTPWYMAPEVLGG  134

Query  1131  MSYGMPIDMWSLGCILAELYSGYPIFPGENEQEQLACIMEVFGPPEKHLIEKSTRKKLFF  1190
               YG  +D+WSLGCIL EL +G P FPG N  E             + +I++        
Sbjct  135   NPYGPKVDVWSLGCILYELLTGKPPFPGINGNEI-----------YELIIDQPYAFPELP  183

Query  1191  DSLGKPRLTVSSKGRRRRPSSKDLKQVLKCDDDAFLDFISRCLRWDPARRLTPHDALRHE  1250
              +L                 S++ K           D + + L+ DP++RLT   AL+H 
Sbjct  184   SNL-----------------SEEAK-----------DLLKKLLKKDPSKRLTATQALQHP  215

Query  1251  FI  1252
             + 
Sbjct  216   WF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 71.8 bits (177),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 97/217 (45%), Gaps = 30/217 (14%)

Query  959   LDVLGKGSFGQVVRCI----DHKTGALVAVKIIRNKKRFHQQA--LIEVNLLQKLKEWDP  1012
              + LG+G+FG+V +         T   VAVK ++      ++   L E ++++KL    P
Sbjct  4     GEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKLDH--P  61

Query  1013  HRRHSVVNF----TQSFYFRGHLCISTELL-GMNLYEFIKAHDFKGFSLKLIRRFTKQIL  1067
             +    +V      TQ       L I TE + G +L +F++ H  K  +LK +     QI 
Sbjct  62    N----IVKLLGVCTQG----EPLYIVTEYMPGGDLLDFLRKHKRK-LTLKDLLSMALQIA  112

Query  1068  GTLTLLHTKKVIHCDLKPENILLVHPMSSEIRVIDFGSSCFENEKVYTYIQSR-----FY  1122
               +  L +K  +H DL   N L+   +   +++ DFG S    +  Y   +        +
Sbjct  113   KGMEYLESKNFVHRDLAARNCLVSENL--VVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  1123  RSPEVILGMSYGMPIDMWSLGCILAELYS-GYPIFPG  1158
              +PE +    +    D+WS G +L E+++ G   +PG
Sbjct  171   MAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPG  207



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1756541600


Query= TCONS_00017032

Length=1371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  151     9e-42
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            71.8    5e-14


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 151 bits (383),  Expect = 9e-42, Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 123/302 (41%), Gaps = 90/302 (30%)

Query  956   YEVLDVLGKGSFGQVVRCIDHKTGALVAVKIIRNKKR---FHQQALIEVNLLQKLKEWDP  1012
             YEVL  LG GSFG V +     TG +VA+K I+ +K      +  L E+ +L+KL     
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKL-----  55

Query  1013  HRRHS-VVNFTQSFYFRGHLCISTELL-GMNLYEFIKAHDFKGFSLKLIRRFTKQILGTL  1070
                H  +V    +F  + +L +  E + G +L++ +       FS +  +   KQIL  L
Sbjct  56    --NHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEK--GAFSEREAKFIMKQILEGL  111

Query  1071  TLLHTKKVIHCDLKPENILLVHPMSSEIRVIDFGSSCFENEKVYTYIQSRFYRSPEVILG  1130
                            E+                         + T++ + +Y +PEV+ G
Sbjct  112   ---------------ES----------------------GSSLTTFVGTPWYMAPEVLGG  134

Query  1131  MSYGMPIDMWSLGCILAELYSGYPIFPGENEQEQLACIMEVFGPPEKHLIEKSTRKKLFF  1190
               YG  +D+WSLGCIL EL +G P FPG N  E             + +I++        
Sbjct  135   NPYGPKVDVWSLGCILYELLTGKPPFPGINGNEI-----------YELIIDQPYAFPELP  183

Query  1191  DSLGKPRLTVSSKGRRRRPSSKDLKQVLKCDDDAFLDFISRCLRWDPARRLTPHDALRHE  1250
              +L                 S++ K           D + + L+ DP++RLT   AL+H 
Sbjct  184   SNL-----------------SEEAK-----------DLLKKLLKKDPSKRLTATQALQHP  215

Query  1251  FI  1252
             + 
Sbjct  216   WF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 71.8 bits (177),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 97/217 (45%), Gaps = 30/217 (14%)

Query  959   LDVLGKGSFGQVVRCI----DHKTGALVAVKIIRNKKRFHQQA--LIEVNLLQKLKEWDP  1012
              + LG+G+FG+V +         T   VAVK ++      ++   L E ++++KL    P
Sbjct  4     GEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKLDH--P  61

Query  1013  HRRHSVVNF----TQSFYFRGHLCISTELL-GMNLYEFIKAHDFKGFSLKLIRRFTKQIL  1067
             +    +V      TQ       L I TE + G +L +F++ H  K  +LK +     QI 
Sbjct  62    N----IVKLLGVCTQG----EPLYIVTEYMPGGDLLDFLRKHKRK-LTLKDLLSMALQIA  112

Query  1068  GTLTLLHTKKVIHCDLKPENILLVHPMSSEIRVIDFGSSCFENEKVYTYIQSR-----FY  1122
               +  L +K  +H DL   N L+   +   +++ DFG S    +  Y   +        +
Sbjct  113   KGMEYLESKNFVHRDLAARNCLVSENL--VVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  1123  RSPEVILGMSYGMPIDMWSLGCILAELYS-GYPIFPG  1158
              +PE +    +    D+WS G +L E+++ G   +PG
Sbjct  171   MAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPG  207



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0722    0.140     1.90     42.6     43.6 

Effective search space used: 1752411800


Query= TCONS_00010223

Length=1424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  151     9e-42
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            71.8    6e-14


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 151 bits (383),  Expect = 9e-42, Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 123/302 (41%), Gaps = 90/302 (30%)

Query  1026  YEVLDVLGKGSFGQVVRCIDHKTGALVAVKIIRNKKR---FHQQALIEVNLLQKLKEWDP  1082
             YEVL  LG GSFG V +     TG +VA+K I+ +K      +  L E+ +L+KL     
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKL-----  55

Query  1083  HRRHS-VVNFTQSFYFRGHLCISTELL-GMNLYEFIKAHDFKGFSLKLIRRFTKQILGTL  1140
                H  +V    +F  + +L +  E + G +L++ +       FS +  +   KQIL  L
Sbjct  56    --NHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEK--GAFSEREAKFIMKQILEGL  111

Query  1141  TLLHTKKVIHCDLKPENILLVHPMSSEIRVIDFGSSCFENEKVYTYIQSRFYRSPEVILG  1200
                            E+                         + T++ + +Y +PEV+ G
Sbjct  112   ---------------ES----------------------GSSLTTFVGTPWYMAPEVLGG  134

Query  1201  MSYGMPIDMWSLGCILAELYSGYPIFPGENEQEQLACIMEVFGPPEKHLIEKSTRKKLFF  1260
               YG  +D+WSLGCIL EL +G P FPG N  E             + +I++        
Sbjct  135   NPYGPKVDVWSLGCILYELLTGKPPFPGINGNEI-----------YELIIDQPYAFPELP  183

Query  1261  DSLGKPRLTVSSKGRRRRPSSKDLKQVLKCDDDAFLDFISRCLRWDPARRLTPHDALRHE  1320
              +L                 S++ K           D + + L+ DP++RLT   AL+H 
Sbjct  184   SNL-----------------SEEAK-----------DLLKKLLKKDPSKRLTATQALQHP  215

Query  1321  FI  1322
             + 
Sbjct  216   WF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 71.8 bits (177),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 97/217 (45%), Gaps = 30/217 (14%)

Query  1029  LDVLGKGSFGQVVRCI----DHKTGALVAVKIIRNKKRFHQQA--LIEVNLLQKLKEWDP  1082
              + LG+G+FG+V +         T   VAVK ++      ++   L E ++++KL    P
Sbjct  4     GEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKLDH--P  61

Query  1083  HRRHSVVNF----TQSFYFRGHLCISTELL-GMNLYEFIKAHDFKGFSLKLIRRFTKQIL  1137
             +    +V      TQ       L I TE + G +L +F++ H  K  +LK +     QI 
Sbjct  62    N----IVKLLGVCTQG----EPLYIVTEYMPGGDLLDFLRKHKRK-LTLKDLLSMALQIA  112

Query  1138  GTLTLLHTKKVIHCDLKPENILLVHPMSSEIRVIDFGSSCFENEKVYTYIQSR-----FY  1192
               +  L +K  +H DL   N L+   +   +++ DFG S    +  Y   +        +
Sbjct  113   KGMEYLESKNFVHRDLAARNCLVSENL--VVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  1193  RSPEVILGMSYGMPIDMWSLGCILAELYS-GYPIFPG  1228
              +PE +    +    D+WS G +L E+++ G   +PG
Sbjct  171   MAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPG  207



Lambda      K        H        a         alpha
   0.311    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1825371600


Query= TCONS_00010222

Length=1440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  151     9e-42
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            71.8    6e-14


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 151 bits (383),  Expect = 9e-42, Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 123/302 (41%), Gaps = 90/302 (30%)

Query  1025  YEVLDVLGKGSFGQVVRCIDHKTGALVAVKIIRNKKR---FHQQALIEVNLLQKLKEWDP  1081
             YEVL  LG GSFG V +     TG +VA+K I+ +K      +  L E+ +L+KL     
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKL-----  55

Query  1082  HRRHS-VVNFTQSFYFRGHLCISTELL-GMNLYEFIKAHDFKGFSLKLIRRFTKQILGTL  1139
                H  +V    +F  + +L +  E + G +L++ +       FS +  +   KQIL  L
Sbjct  56    --NHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEK--GAFSEREAKFIMKQILEGL  111

Query  1140  TLLHTKKVIHCDLKPENILLVHPMSSEIRVIDFGSSCFENEKVYTYIQSRFYRSPEVILG  1199
                            E+                         + T++ + +Y +PEV+ G
Sbjct  112   ---------------ES----------------------GSSLTTFVGTPWYMAPEVLGG  134

Query  1200  MSYGMPIDMWSLGCILAELYSGYPIFPGENEQEQLACIMEVFGPPEKHLIEKSTRKKLFF  1259
               YG  +D+WSLGCIL EL +G P FPG N  E             + +I++        
Sbjct  135   NPYGPKVDVWSLGCILYELLTGKPPFPGINGNEI-----------YELIIDQPYAFPELP  183

Query  1260  DSLGKPRLTVSSKGRRRRPSSKDLKQVLKCDDDAFLDFISRCLRWDPARRLTPHDALRHE  1319
              +L                 S++ K           D + + L+ DP++RLT   AL+H 
Sbjct  184   SNL-----------------SEEAK-----------DLLKKLLKKDPSKRLTATQALQHP  215

Query  1320  FI  1321
             + 
Sbjct  216   WF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 71.8 bits (177),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 97/217 (45%), Gaps = 30/217 (14%)

Query  1028  LDVLGKGSFGQVVRCI----DHKTGALVAVKIIRNKKRFHQQA--LIEVNLLQKLKEWDP  1081
              + LG+G+FG+V +         T   VAVK ++      ++   L E ++++KL    P
Sbjct  4     GEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKLDH--P  61

Query  1082  HRRHSVVNF----TQSFYFRGHLCISTELL-GMNLYEFIKAHDFKGFSLKLIRRFTKQIL  1136
             +    +V      TQ       L I TE + G +L +F++ H  K  +LK +     QI 
Sbjct  62    N----IVKLLGVCTQG----EPLYIVTEYMPGGDLLDFLRKHKRK-LTLKDLLSMALQIA  112

Query  1137  GTLTLLHTKKVIHCDLKPENILLVHPMSSEIRVIDFGSSCFENEKVYTYIQSR-----FY  1191
               +  L +K  +H DL   N L+   +   +++ DFG S    +  Y   +        +
Sbjct  113   KGMEYLESKNFVHRDLAARNCLVSENL--VVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  1192  RSPEVILGMSYGMPIDMWSLGCILAELYS-GYPIFPG  1227
              +PE +    +    D+WS G +L E+++ G   +PG
Sbjct  171   MAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPG  207



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1847397200


Query= TCONS_00010224

Length=1444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  151     9e-42
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            71.8    6e-14


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 151 bits (383),  Expect = 9e-42, Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 123/302 (41%), Gaps = 90/302 (30%)

Query  1026  YEVLDVLGKGSFGQVVRCIDHKTGALVAVKIIRNKKR---FHQQALIEVNLLQKLKEWDP  1082
             YEVL  LG GSFG V +     TG +VA+K I+ +K      +  L E+ +L+KL     
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKL-----  55

Query  1083  HRRHS-VVNFTQSFYFRGHLCISTELL-GMNLYEFIKAHDFKGFSLKLIRRFTKQILGTL  1140
                H  +V    +F  + +L +  E + G +L++ +       FS +  +   KQIL  L
Sbjct  56    --NHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEK--GAFSEREAKFIMKQILEGL  111

Query  1141  TLLHTKKVIHCDLKPENILLVHPMSSEIRVIDFGSSCFENEKVYTYIQSRFYRSPEVILG  1200
                            E+                         + T++ + +Y +PEV+ G
Sbjct  112   ---------------ES----------------------GSSLTTFVGTPWYMAPEVLGG  134

Query  1201  MSYGMPIDMWSLGCILAELYSGYPIFPGENEQEQLACIMEVFGPPEKHLIEKSTRKKLFF  1260
               YG  +D+WSLGCIL EL +G P FPG N  E             + +I++        
Sbjct  135   NPYGPKVDVWSLGCILYELLTGKPPFPGINGNEI-----------YELIIDQPYAFPELP  183

Query  1261  DSLGKPRLTVSSKGRRRRPSSKDLKQVLKCDDDAFLDFISRCLRWDPARRLTPHDALRHE  1320
              +L                 S++ K           D + + L+ DP++RLT   AL+H 
Sbjct  184   SNL-----------------SEEAK-----------DLLKKLLKKDPSKRLTATQALQHP  215

Query  1321  FI  1322
             + 
Sbjct  216   WF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 71.8 bits (177),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 97/217 (45%), Gaps = 30/217 (14%)

Query  1029  LDVLGKGSFGQVVRCI----DHKTGALVAVKIIRNKKRFHQQA--LIEVNLLQKLKEWDP  1082
              + LG+G+FG+V +         T   VAVK ++      ++   L E ++++KL    P
Sbjct  4     GEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKLDH--P  61

Query  1083  HRRHSVVNF----TQSFYFRGHLCISTELL-GMNLYEFIKAHDFKGFSLKLIRRFTKQIL  1137
             +    +V      TQ       L I TE + G +L +F++ H  K  +LK +     QI 
Sbjct  62    N----IVKLLGVCTQG----EPLYIVTEYMPGGDLLDFLRKHKRK-LTLKDLLSMALQIA  112

Query  1138  GTLTLLHTKKVIHCDLKPENILLVHPMSSEIRVIDFGSSCFENEKVYTYIQSR-----FY  1192
               +  L +K  +H DL   N L+   +   +++ DFG S    +  Y   +        +
Sbjct  113   KGMEYLESKNFVHRDLAARNCLVSENL--VVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  1193  RSPEVILGMSYGMPIDMWSLGCILAELYS-GYPIFPG  1228
              +PE +    +    D+WS G +L E+++ G   +PG
Sbjct  171   MAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPG  207



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1825113890


Query= TCONS_00017033

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  71.1    1e-15


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 71.1 bits (175),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 39/114 (34%)

Query  1    MWSLGCILAELYSGYPIFPGENEQEQLACIMEVFGPPEKHLIEKSTRKKLFFDSLGKPRL  60
            +WSLGCIL EL +G P FPG N  E             + +I++         +L     
Sbjct  143  VWSLGCILYELLTGKPPFPGINGNEI-----------YELIIDQPYAFPELPSNL-----  186

Query  61   TVSSKGRRRRPSSKDLKQVLKCDDDAFLDFISRCLRWDPARRLTPHDALRHEFI  114
                        S++ K           D + + L+ DP++RLT   AL+H + 
Sbjct  187  ------------SEEAK-----------DLLKKLLKKDPSKRLTATQALQHPWF  217



Lambda      K        H        a         alpha
   0.316    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00010225

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462327 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesi...  156     3e-46
CDD:464000 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Interm...  126     2e-36


>CDD:462327 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesicle transporter. 
 This family is conserved from plants and fungi to 
humans. Erv46 works in close conjunction with Erv41 and together 
they form a complex which cycles between the endoplasmic 
reticulum and Golgi complex. Erv46-41 interacts strongly 
with the endoplasmic reticulum glucosidase II. Mammalian glucosidase 
II comprises a catalytic alpha-subunit and a 58 kDa 
beta subunit, which is required for ER localization. All proteins 
identified biochemically as Erv41p-Erv46p interactors 
are localized to the early secretory pathway and are involved 
in protein maturation and processing in the ER and/or sorting 
into COPII vesicles for transport to the Golgi.
Length=225

 Score = 156 bits (397),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 86/187 (46%), Gaps = 31/187 (17%)

Query  193  CRIYGSLEGNKVQGDFHITARGHGYHNNAPHL--------EHKTFNFSHMITELSFGPHY  244
            CRI G+LE NKV G+FHI A G  +     H+            FNFSH I  LSFGP  
Sbjct  55   CRIKGTLEVNKVAGNFHI-APGRSFQQGGMHVHDLSPYLKLPDKFNFSHTIHHLSFGPDI  113

Query  245  P-TLLNPLDKTIATTEDHYYKYQYFLSIVPTIYSKGNLALDTYANAPPSNRRGKNLVFTN  303
            P   +NPLD T   T+   Y +QYFL +VPT Y                       + TN
Sbjct  114  PGEKVNPLDGTKVQTDTGNYMFQYFLKVVPTRYEF----------------LDGKKIETN  157

Query  304  QYAVTSQSSVI-----PESPYFIPGLFFKYNIEPILLLISEERTSFLSLLVRLVNTVSGV  358
            QY+VTS    +           +PG+FF Y+I P+ ++ +E+R SF   L  +   + GV
Sbjct  158  QYSVTSHERPLTGGRDEHGRGGLPGVFFNYDISPMKVINTEQRRSFSHFLTSVCAIIGGV  217

Query  359  MVTGGWL  365
                  +
Sbjct  218  FTVASLI  224


>CDD:464000 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Intermediate 
Compartment (ERGIC).  This family is the N-terminal of ERGIC 
proteins, ER-Golgi intermediate compartment clusters, otherwise 
known as Ervs, and is associated with family COPIIcoated_ERV, 
pfam07970.
Length=91

 Score = 126 bits (318),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 40/91 (44%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query  24   LRTFDAFPKTKPSYTAPSPRGGQWTVLVLLVCTFLSISEFRTWLKGTEKQHFSVEKGISH  83
            L++FDAFPKT   Y   +  GG  T++ +L+  FL +SE  ++L GT      V+K    
Sbjct  1    LKSFDAFPKTPEDYRVRTSSGGIITIISILIILFLFLSELGSYLTGTVDPELVVDKSRGE  60

Query  84   DLQLNLDIVV-HMSCDMLDVNIQDASGDRIL  113
             LQ+NLDI    M CD+L V++ DASGDR L
Sbjct  61   KLQINLDITFPAMPCDLLSVDVMDASGDRQL  91



Lambda      K        H        a         alpha
   0.319    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00010227

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464000 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Interm...  126     2e-37


>CDD:464000 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Intermediate 
Compartment (ERGIC).  This family is the N-terminal of ERGIC 
proteins, ER-Golgi intermediate compartment clusters, otherwise 
known as Ervs, and is associated with family COPIIcoated_ERV, 
pfam07970.
Length=91

 Score = 126 bits (318),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 40/91 (44%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query  24   LRTFDAFPKTKPSYTAPSPRGGQWTVLVLLVCTFLSISEFRTWLKGTEKQHFSVEKGISH  83
            L++FDAFPKT   Y   +  GG  T++ +L+  FL +SE  ++L GT      V+K    
Sbjct  1    LKSFDAFPKTPEDYRVRTSSGGIITIISILIILFLFLSELGSYLTGTVDPELVVDKSRGE  60

Query  84   DLQLNLDIVV-HMSCDMLDVNIQDASGDRIL  113
             LQ+NLDI    M CD+L V++ DASGDR L
Sbjct  61   KLQINLDITFPAMPCDLLSVDVMDASGDRQL  91



Lambda      K        H        a         alpha
   0.319    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00010226

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462327 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesi...  156     3e-46
CDD:464000 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Interm...  126     2e-36


>CDD:462327 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesicle transporter. 
 This family is conserved from plants and fungi to 
humans. Erv46 works in close conjunction with Erv41 and together 
they form a complex which cycles between the endoplasmic 
reticulum and Golgi complex. Erv46-41 interacts strongly 
with the endoplasmic reticulum glucosidase II. Mammalian glucosidase 
II comprises a catalytic alpha-subunit and a 58 kDa 
beta subunit, which is required for ER localization. All proteins 
identified biochemically as Erv41p-Erv46p interactors 
are localized to the early secretory pathway and are involved 
in protein maturation and processing in the ER and/or sorting 
into COPII vesicles for transport to the Golgi.
Length=225

 Score = 156 bits (397),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 86/187 (46%), Gaps = 31/187 (17%)

Query  193  CRIYGSLEGNKVQGDFHITARGHGYHNNAPHL--------EHKTFNFSHMITELSFGPHY  244
            CRI G+LE NKV G+FHI A G  +     H+            FNFSH I  LSFGP  
Sbjct  55   CRIKGTLEVNKVAGNFHI-APGRSFQQGGMHVHDLSPYLKLPDKFNFSHTIHHLSFGPDI  113

Query  245  P-TLLNPLDKTIATTEDHYYKYQYFLSIVPTIYSKGNLALDTYANAPPSNRRGKNLVFTN  303
            P   +NPLD T   T+   Y +QYFL +VPT Y                       + TN
Sbjct  114  PGEKVNPLDGTKVQTDTGNYMFQYFLKVVPTRYEF----------------LDGKKIETN  157

Query  304  QYAVTSQSSVI-----PESPYFIPGLFFKYNIEPILLLISEERTSFLSLLVRLVNTVSGV  358
            QY+VTS    +           +PG+FF Y+I P+ ++ +E+R SF   L  +   + GV
Sbjct  158  QYSVTSHERPLTGGRDEHGRGGLPGVFFNYDISPMKVINTEQRRSFSHFLTSVCAIIGGV  217

Query  359  MVTGGWL  365
                  +
Sbjct  218  FTVASLI  224


>CDD:464000 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Intermediate 
Compartment (ERGIC).  This family is the N-terminal of ERGIC 
proteins, ER-Golgi intermediate compartment clusters, otherwise 
known as Ervs, and is associated with family COPIIcoated_ERV, 
pfam07970.
Length=91

 Score = 126 bits (318),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 40/91 (44%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query  24   LRTFDAFPKTKPSYTAPSPRGGQWTVLVLLVCTFLSISEFRTWLKGTEKQHFSVEKGISH  83
            L++FDAFPKT   Y   +  GG  T++ +L+  FL +SE  ++L GT      V+K    
Sbjct  1    LKSFDAFPKTPEDYRVRTSSGGIITIISILIILFLFLSELGSYLTGTVDPELVVDKSRGE  60

Query  84   DLQLNLDIVV-HMSCDMLDVNIQDASGDRIL  113
             LQ+NLDI    M CD+L V++ DASGDR L
Sbjct  61   KLQINLDITFPAMPCDLLSVDVMDASGDRQL  91



Lambda      K        H        a         alpha
   0.319    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00010228

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462327 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesi...  156     1e-46
CDD:464000 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Interm...  106     5e-29


>CDD:462327 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesicle transporter. 
 This family is conserved from plants and fungi to 
humans. Erv46 works in close conjunction with Erv41 and together 
they form a complex which cycles between the endoplasmic 
reticulum and Golgi complex. Erv46-41 interacts strongly 
with the endoplasmic reticulum glucosidase II. Mammalian glucosidase 
II comprises a catalytic alpha-subunit and a 58 kDa 
beta subunit, which is required for ER localization. All proteins 
identified biochemically as Erv41p-Erv46p interactors 
are localized to the early secretory pathway and are involved 
in protein maturation and processing in the ER and/or sorting 
into COPII vesicles for transport to the Golgi.
Length=225

 Score = 156 bits (398),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 86/187 (46%), Gaps = 31/187 (17%)

Query  175  CRIYGSLEGNKVQGDFHITARGHGYHNNAPHL--------EHKTFNFSHMITELSFGPHY  226
            CRI G+LE NKV G+FHI A G  +     H+            FNFSH I  LSFGP  
Sbjct  55   CRIKGTLEVNKVAGNFHI-APGRSFQQGGMHVHDLSPYLKLPDKFNFSHTIHHLSFGPDI  113

Query  227  P-TLLNPLDKTIATTEDHYYKYQYFLSIVPTIYSKGNLALDTYANAPPSNRRGKNLVFTN  285
            P   +NPLD T   T+   Y +QYFL +VPT Y                       + TN
Sbjct  114  PGEKVNPLDGTKVQTDTGNYMFQYFLKVVPTRYEF----------------LDGKKIETN  157

Query  286  QYAVTSQSSVI-----PESPYFIPGLFFKYNIEPILLLISEERTSFLSLLVRLVNTVSGV  340
            QY+VTS    +           +PG+FF Y+I P+ ++ +E+R SF   L  +   + GV
Sbjct  158  QYSVTSHERPLTGGRDEHGRGGLPGVFFNYDISPMKVINTEQRRSFSHFLTSVCAIIGGV  217

Query  341  MVTGGWL  347
                  +
Sbjct  218  FTVASLI  224


>CDD:464000 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Intermediate 
Compartment (ERGIC).  This family is the N-terminal of ERGIC 
proteins, ER-Golgi intermediate compartment clusters, otherwise 
known as Ervs, and is associated with family COPIIcoated_ERV, 
pfam07970.
Length=91

 Score = 106 bits (267),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 47/84 (56%), Gaps = 1/84 (1%)

Query  13  AKTKPSYTAPSPRGGQWTVLVLLVCTFLSISEFRTWLKGTEKQHFSVEKGISHDLQLNLD  72
            KT   Y   +  GG  T++ +L+  FL +SE  ++L GT      V+K     LQ+NLD
Sbjct  8   PKTPEDYRVRTSSGGIITIISILIILFLFLSELGSYLTGTVDPELVVDKSRGEKLQINLD  67

Query  73  IVV-HMSCDMLDVNIQDASGDRIL  95
           I    M CD+L V++ DASGDR L
Sbjct  68  ITFPAMPCDLLSVDVMDASGDRQL  91



Lambda      K        H        a         alpha
   0.320    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00017035

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00010229

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00010232

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  182     6e-55


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 182 bits (465),  Expect = 6e-55, Method: Composition-based stats.
 Identities = 97/381 (25%), Positives = 150/381 (39%), Gaps = 84/381 (22%)

Query  11   VDVLIVGAGPAGLMLANWMSRLGIKTRIVDKRSTKVFSGQADGLQCRTLEIFDSFDFADR  70
             DVLIVG GPAGLMLA  ++R G++  +V++ +T     +A GL  RT+E+       DR
Sbjct  2    TDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAHGLNQRTMELLRQAGLEDR  61

Query  71   AWRE--SNHMLEICLWNPDKDGVIRRSDRIPDTIPGISRFQQVVLHQGRIERFFLDSIKE  128
               E   +  + +  +N       RR+D                                
Sbjct  62   ILAEGVPHEGMGLAFYNTR-----RRAD--------------------------------  84

Query  129  HSNITVERGVMPTSFEFDASKAADVDDYPITVTLRTLTEEEATPKQQQATNGAAVSDGL-  187
                           +F  S    V  YP T     L E              A + G  
Sbjct  85   --------------LDFLTS-PPRVTVYPQTELEPILVE-------------HAEARGAQ  116

Query  188  -FRSN--LSPDDTDDLLRAAELNSRANQTQVVKAKFMVGCDGAHSWVRRQLGFKLEGDST  244
                   LS +   D + A   + R  +   V+AK++VGCDG  S VR+ LG + EG   
Sbjct  117  VRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKTLGIEFEGFEG  176

Query  245  DYIWGVLDIIP-ITDFPDIRMR----CAIHSASAGSVMVIPRENK-LVRLYIQLQSIVTG  298
               +G LD++    D  D   R      I++  +   MV P  +    R Y+Q   +   
Sbjct  177  V-PFGSLDVLFDAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSAGRERYYVQ---VPWD  232

Query  299  GGKADRS-KITPDMILKSAQRILHPYKLDYSYCDWWTAYQIGQRVGDKFSLEERVFLAGD  357
                +R  + T + + +  + I+           W + + +  RV  ++  + RVFLAGD
Sbjct  233  EEVEERPEEFTDEELKQRLRSIVGIDLALVEI-LWKSIWGVASRVATRYR-KGRVFLAGD  290

Query  358  AVHTHSPKAGQGMNVSMQDSM  378
            A H H P  GQG+N ++QD+ 
Sbjct  291  AAHIHPPTGGQGLNTAIQDAF  311



Lambda      K        H        a         alpha
   0.320    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00010230

Length=689
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429765 pfam07976, Phe_hydrox_dim, Phenol hydroxylase, C-termi...  279     4e-91
CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  233     4e-71


>CDD:429765 pfam07976, Phe_hydrox_dim, Phenol hydroxylase, C-terminal dimerization 
domain.  Phenol hydroxylase acts a homodimer, to hydroxylates 
phenol to catechol or similar product. The enzyme 
is comprised of three domains. The first two domains from 
the active site. The third domain, this domain, is involved 
in forming the dimerization interface. The domain adopts a thioredoxin-like 
fold.
Length=166

 Score = 279 bits (715),  Expect = 4e-91, Method: Composition-based stats.
 Identities = 97/188 (52%), Positives = 124/188 (66%), Gaps = 22/188 (12%)

Query  451  FASGIAVDYGSSLLVAKAGDSGEQGDGTDVASKDKSLRVVSKQHLSTGISVGMRMPSFKV  510
            F SG+ VDYG S+LVA                        S Q+L++G+ VG R PS KV
Sbjct  1    FTSGVGVDYGPSILVAG----------------------TSHQNLASGLPVGRRFPSAKV  38

Query  511  LNQSDARPWHLQELLKSNGRWRVIVFAGDLTNPENFDRYSQLGEKLSSPTSFLRRYTPPG  570
            + Q+DA P HLQ+ L S+GR+R++VFAGD+++P    R   L + LSS +SFL RYTP G
Sbjct  39   VRQADANPVHLQDELPSDGRFRILVFAGDISDPAQKSRLEALADYLSSSSSFLSRYTPAG  98

Query  571  QPIDSVIEVLTVHAGPRTSIELLDLPEIFHPYREKQGWDYWKVFVDDQSYHEGHGKAYEN  630
              IDSV +VL +H+ PRT +EL DLPE+  P+  K GWDYWKV+VDD+SYHEG G AYE 
Sbjct  99   ADIDSVFDVLLIHSAPRTEVELEDLPEVLRPFDGKLGWDYWKVYVDDESYHEGGGDAYEK  158

Query  631  YGIDPRRG  638
            YGIDP+RG
Sbjct  159  YGIDPKRG  166


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 233 bits (596),  Expect = 4e-71, Method: Composition-based stats.
 Identities = 112/418 (27%), Positives = 175/418 (42%), Gaps = 84/418 (20%)

Query  11   VDVLIVGAGPAGLMLANWMSRLGIKTRIVDKRSTKVFSGQADGLQCRTLEIFDSFDFADR  70
             DVLIVG GPAGLMLA  ++R G++  +V++ +T     +A GL  RT+E+       DR
Sbjct  2    TDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAHGLNQRTMELLRQAGLEDR  61

Query  71   AWRE--SNHMLEICLWNPDKDGVIRRSDRIPDTIPGISRFQQVVLHQGRIERFFLDSIKE  128
               E   +  + +  +N       RR+D                                
Sbjct  62   ILAEGVPHEGMGLAFYNTR-----RRAD--------------------------------  84

Query  129  HSNITVERGVMPTSFEFDASKAADVDDYPITVTLRTLTEEEATPKQQQATNGAAVSDGL-  187
                           +F  S    V  YP T     L E              A + G  
Sbjct  85   --------------LDFLTS-PPRVTVYPQTELEPILVE-------------HAEARGAQ  116

Query  188  -FRSN--LSPDDTDDLLRAAELNSRANQTQVVKAKFMVGCDGAHSWVRRQLGFKLEGDST  244
                   LS +   D + A   + R  +   V+AK++VGCDG  S VR+ LG + EG   
Sbjct  117  VRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKTLGIEFEGFEG  176

Query  245  DYIWGVLDIIP-ITDFPDIRMR----CAIHSASAGSVMVIPRENK-LVRLYIQLQSIVTG  298
               +G LD++    D  D   R      I++  +   MV P  +    R Y+Q   +   
Sbjct  177  V-PFGSLDVLFDAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSAGRERYYVQ---VPWD  232

Query  299  GGKADRS-KITPDMILKSAQRILHPYKLDYSYCDWWTAYQIGQRVGDKFSLEERVFLAGD  357
                +R  + T + + +  + I+           W + + +  RV  ++  + RVFLAGD
Sbjct  233  EEVEERPEEFTDEELKQRLRSIVGIDLALVEI-LWKSIWGVASRVATRYR-KGRVFLAGD  290

Query  358  AVHTHSPKAGQGMNVSMQDTYNLGWKLAHVIKGYSDRAILKTYQSERRRIAQDLINFD  415
            A H H P  GQG+N ++QD +NL WKLA V++G +  ++L TY +ER  +A  +++F 
Sbjct  291  AAHIHPPTGGQGLNTAIQDAFNLAWKLAAVLRGQAGESLLDTYSAERLPVAWAVVDFA  348



Lambda      K        H        a         alpha
   0.319    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 878974840


Query= TCONS_00010231

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429765 pfam07976, Phe_hydrox_dim, Phenol hydroxylase, C-termi...  278     7e-92
CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  182     1e-52


>CDD:429765 pfam07976, Phe_hydrox_dim, Phenol hydroxylase, C-terminal dimerization 
domain.  Phenol hydroxylase acts a homodimer, to hydroxylates 
phenol to catechol or similar product. The enzyme 
is comprised of three domains. The first two domains from 
the active site. The third domain, this domain, is involved 
in forming the dimerization interface. The domain adopts a thioredoxin-like 
fold.
Length=166

 Score = 278 bits (714),  Expect = 7e-92, Method: Composition-based stats.
 Identities = 97/188 (52%), Positives = 124/188 (66%), Gaps = 22/188 (12%)

Query  374  FASGIAVDYGSSLLVAKAGDSGEQGDGTDVASKDKSLRVVSKQHLSTGISVGMRMPSFKV  433
            F SG+ VDYG S+LVA                        S Q+L++G+ VG R PS KV
Sbjct  1    FTSGVGVDYGPSILVAG----------------------TSHQNLASGLPVGRRFPSAKV  38

Query  434  LNQSDARPWHLQELLKSNGRWRVIVFAGDLTNPENFDRYSQLGEKLSSPTSFLRRYTPPG  493
            + Q+DA P HLQ+ L S+GR+R++VFAGD+++P    R   L + LSS +SFL RYTP G
Sbjct  39   VRQADANPVHLQDELPSDGRFRILVFAGDISDPAQKSRLEALADYLSSSSSFLSRYTPAG  98

Query  494  QPIDSVIEVLTVHAGPRTSIELLDLPEIFHPYREKQGWDYWKVFVDDQSYHEGHGKAYEN  553
              IDSV +VL +H+ PRT +EL DLPE+  P+  K GWDYWKV+VDD+SYHEG G AYE 
Sbjct  99   ADIDSVFDVLLIHSAPRTEVELEDLPEVLRPFDGKLGWDYWKVYVDDESYHEGGGDAYEK  158

Query  554  YGIDPRRG  561
            YGIDP+RG
Sbjct  159  YGIDPKRG  166


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 182 bits (464),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 88/341 (26%), Positives = 140/341 (41%), Gaps = 44/341 (13%)

Query  19   DRIPDTIPGISRFQQVVLHQGRIERF----FLDSIKEHSN------ITVERGVMPTSFEF  68
            +R   T       +   L+Q  +E        D I           +           +F
Sbjct  31   ERHATTSVL---PRAHGLNQRTMELLRQAGLEDRILAEGVPHEGMGLAFYNTRRRADLDF  87

Query  69   DASKAADVDDYPITVTLRTLTEEEATPKQQQATNGAAVSDGL--FRSN--LSPDDTDDLL  124
              S    V  YP T     L E              A + G         LS +   D +
Sbjct  88   LTS-PPRVTVYPQTELEPILVE-------------HAEARGAQVRFGTEVLSLEQDGDGV  133

Query  125  RAAELNSRANQTQVVKAKFMVGCDGAHSWVRRQLGFKLEGDSTDYIWGVLDIIP-ITDFP  183
             A   + R  +   V+AK++VGCDG  S VR+ LG + EG      +G LD++    D  
Sbjct  134  TAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKTLGIEFEGFEGV-PFGSLDVLFDAPDLS  192

Query  184  DIRMR----CAIHSASAGSVMVIPRENK-LVRLYIQLQSIVTGGGKADRS-KITPDMILK  237
            D   R      I++  +   MV P  +    R Y+Q   +       +R  + T + + +
Sbjct  193  DPVERAFVHYLIYAPHSRGFMVGPWRSAGRERYYVQ---VPWDEEVEERPEEFTDEELKQ  249

Query  238  SAQRILHPYKLDYSYCDWWTAYQIGQRVGDKFSLEERVFLAGDAVHTHSPKAGQGMNVSM  297
              + I+           W + + +  RV  ++  + RVFLAGDA H H P  GQG+N ++
Sbjct  250  RLRSIVGIDLALVEI-LWKSIWGVASRVATRYR-KGRVFLAGDAAHIHPPTGGQGLNTAI  307

Query  298  QDTYNLGWKLAHVIKGYSDRAILKTYQSERRRIAQDLINFD  338
            QD +NL WKLA V++G +  ++L TY +ER  +A  +++F 
Sbjct  308  QDAFNLAWKLAAVLRGQAGESLLDTYSAERLPVAWAVVDFA  348



Lambda      K        H        a         alpha
   0.319    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 777102560


Query= TCONS_00010233

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429765 pfam07976, Phe_hydrox_dim, Phenol hydroxylase, C-termi...  278     7e-92
CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  182     1e-52


>CDD:429765 pfam07976, Phe_hydrox_dim, Phenol hydroxylase, C-terminal dimerization 
domain.  Phenol hydroxylase acts a homodimer, to hydroxylates 
phenol to catechol or similar product. The enzyme 
is comprised of three domains. The first two domains from 
the active site. The third domain, this domain, is involved 
in forming the dimerization interface. The domain adopts a thioredoxin-like 
fold.
Length=166

 Score = 278 bits (714),  Expect = 7e-92, Method: Composition-based stats.
 Identities = 97/188 (52%), Positives = 124/188 (66%), Gaps = 22/188 (12%)

Query  374  FASGIAVDYGSSLLVAKAGDSGEQGDGTDVASKDKSLRVVSKQHLSTGISVGMRMPSFKV  433
            F SG+ VDYG S+LVA                        S Q+L++G+ VG R PS KV
Sbjct  1    FTSGVGVDYGPSILVAG----------------------TSHQNLASGLPVGRRFPSAKV  38

Query  434  LNQSDARPWHLQELLKSNGRWRVIVFAGDLTNPENFDRYSQLGEKLSSPTSFLRRYTPPG  493
            + Q+DA P HLQ+ L S+GR+R++VFAGD+++P    R   L + LSS +SFL RYTP G
Sbjct  39   VRQADANPVHLQDELPSDGRFRILVFAGDISDPAQKSRLEALADYLSSSSSFLSRYTPAG  98

Query  494  QPIDSVIEVLTVHAGPRTSIELLDLPEIFHPYREKQGWDYWKVFVDDQSYHEGHGKAYEN  553
              IDSV +VL +H+ PRT +EL DLPE+  P+  K GWDYWKV+VDD+SYHEG G AYE 
Sbjct  99   ADIDSVFDVLLIHSAPRTEVELEDLPEVLRPFDGKLGWDYWKVYVDDESYHEGGGDAYEK  158

Query  554  YGIDPRRG  561
            YGIDP+RG
Sbjct  159  YGIDPKRG  166


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 182 bits (464),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 88/341 (26%), Positives = 140/341 (41%), Gaps = 44/341 (13%)

Query  19   DRIPDTIPGISRFQQVVLHQGRIERF----FLDSIKEHSN------ITVERGVMPTSFEF  68
            +R   T       +   L+Q  +E        D I           +           +F
Sbjct  31   ERHATTSVL---PRAHGLNQRTMELLRQAGLEDRILAEGVPHEGMGLAFYNTRRRADLDF  87

Query  69   DASKAADVDDYPITVTLRTLTEEEATPKQQQATNGAAVSDGL--FRSN--LSPDDTDDLL  124
              S    V  YP T     L E              A + G         LS +   D +
Sbjct  88   LTS-PPRVTVYPQTELEPILVE-------------HAEARGAQVRFGTEVLSLEQDGDGV  133

Query  125  RAAELNSRANQTQVVKAKFMVGCDGAHSWVRRQLGFKLEGDSTDYIWGVLDIIP-ITDFP  183
             A   + R  +   V+AK++VGCDG  S VR+ LG + EG      +G LD++    D  
Sbjct  134  TAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKTLGIEFEGFEGV-PFGSLDVLFDAPDLS  192

Query  184  DIRMR----CAIHSASAGSVMVIPRENK-LVRLYIQLQSIVTGGGKADRS-KITPDMILK  237
            D   R      I++  +   MV P  +    R Y+Q   +       +R  + T + + +
Sbjct  193  DPVERAFVHYLIYAPHSRGFMVGPWRSAGRERYYVQ---VPWDEEVEERPEEFTDEELKQ  249

Query  238  SAQRILHPYKLDYSYCDWWTAYQIGQRVGDKFSLEERVFLAGDAVHTHSPKAGQGMNVSM  297
              + I+           W + + +  RV  ++  + RVFLAGDA H H P  GQG+N ++
Sbjct  250  RLRSIVGIDLALVEI-LWKSIWGVASRVATRYR-KGRVFLAGDAAHIHPPTGGQGLNTAI  307

Query  298  QDTYNLGWKLAHVIKGYSDRAILKTYQSERRRIAQDLINFD  338
            QD +NL WKLA V++G +  ++L TY +ER  +A  +++F 
Sbjct  308  QDAFNLAWKLAAVLRGQAGESLLDTYSAERLPVAWAVVDFA  348



Lambda      K        H        a         alpha
   0.319    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 777102560


Query= TCONS_00017036

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  132     1e-36


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 132 bits (333),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 73/304 (24%), Positives = 115/304 (38%), Gaps = 44/304 (14%)

Query  19   DRIPDTIPGISRFQQVVLHQGRIERF----FLDSIKEHSN------ITVERGVMPTSFEF  68
            +R   T       +   L+Q  +E        D I           +           +F
Sbjct  31   ERHATTSVL---PRAHGLNQRTMELLRQAGLEDRILAEGVPHEGMGLAFYNTRRRADLDF  87

Query  69   DASKAADVDDYPITVTLRTLTEEEATPKQQQATNGAAVSDGL--FRSN--LSPDDTDDLL  124
              S    V  YP T     L E              A + G         LS +   D +
Sbjct  88   LTS-PPRVTVYPQTELEPILVE-------------HAEARGAQVRFGTEVLSLEQDGDGV  133

Query  125  RAAELNSRANQTQVVKAKFMVGCDGAHSWVRRQLGFKLEGDSTDYIWGVLDIIP-ITDFP  183
             A   + R  +   V+AK++VGCDG  S VR+ LG + EG      +G LD++    D  
Sbjct  134  TAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKTLGIEFEGFEGV-PFGSLDVLFDAPDLS  192

Query  184  DIRMR----CAIHSASAGSVMVIPRENK-LVRLYIQLQSIVTGGGKADRS-KITPDMILK  237
            D   R      I++  +   MV P  +    R Y+Q   +       +R  + T + + +
Sbjct  193  DPVERAFVHYLIYAPHSRGFMVGPWRSAGRERYYVQ---VPWDEEVEERPEEFTDEELKQ  249

Query  238  SAQRILHPYKLDYSYCDWWTAYQIGQRVGDKFSLEERVFLAGDAVHTHSPKAGQGMNVSM  297
              + I+           W + + +  RV  ++  + RVFLAGDA H H P  GQG+N ++
Sbjct  250  RLRSIVGIDLALVEI-LWKSIWGVASRVATRYR-KGRVFLAGDAAHIHPPTGGQGLNTAI  307

Query  298  QDSM  301
            QD+ 
Sbjct  308  QDAF  311



Lambda      K        H        a         alpha
   0.320    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00010234

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  234     7e-74


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 234 bits (599),  Expect = 7e-74, Method: Composition-based stats.
 Identities = 112/418 (27%), Positives = 175/418 (42%), Gaps = 84/418 (20%)

Query  11   VDVLIVGAGPAGLMLANWMSRLGIKTRIVDKRSTKVFSGQADGLQCRTLEIFDSFDFADR  70
             DVLIVG GPAGLMLA  ++R G++  +V++ +T     +A GL  RT+E+       DR
Sbjct  2    TDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAHGLNQRTMELLRQAGLEDR  61

Query  71   AWRE--SNHMLEICLWNPDKDGVIRRSDRIPDTIPGISRFQQVVLHQGRIERFFLDSIKE  128
               E   +  + +  +N       RR+D                                
Sbjct  62   ILAEGVPHEGMGLAFYNTR-----RRAD--------------------------------  84

Query  129  HSNITVERGVMPTSFEFDASKAADVDDYPITVTLRTLTEEEATPKQQQATNGAAVSDGL-  187
                           +F  S    V  YP T     L E              A + G  
Sbjct  85   --------------LDFLTS-PPRVTVYPQTELEPILVE-------------HAEARGAQ  116

Query  188  -FRSN--LSPDDTDDLLRAAELNSRANQTQVVKAKFMVGCDGAHSWVRRQLGFKLEGDST  244
                   LS +   D + A   + R  +   V+AK++VGCDG  S VR+ LG + EG   
Sbjct  117  VRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKTLGIEFEGFEG  176

Query  245  DYIWGVLDIIP-ITDFPDIRMR----CAIHSASAGSVMVIPRENK-LVRLYIQLQSIVTG  298
               +G LD++    D  D   R      I++  +   MV P  +    R Y+Q   +   
Sbjct  177  V-PFGSLDVLFDAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSAGRERYYVQ---VPWD  232

Query  299  GGKADRS-KITPDMILKSAQRILHPYKLDYSYCDWWTAYQIGQRVGDKFSLEERVFLAGD  357
                +R  + T + + +  + I+           W + + +  RV  ++  + RVFLAGD
Sbjct  233  EEVEERPEEFTDEELKQRLRSIVGIDLALVEI-LWKSIWGVASRVATRYR-KGRVFLAGD  290

Query  358  AVHTHSPKAGQGMNVSMQDTYNLGWKLAHVIKGYSDRAILKTYQSERRRIAQDLINFD  415
            A H H P  GQG+N ++QD +NL WKLA V++G +  ++L TY +ER  +A  +++F 
Sbjct  291  AAHIHPPTGGQGLNTAIQDAFNLAWKLAAVLRGQAGESLLDTYSAERLPVAWAVVDFA  348



Lambda      K        H        a         alpha
   0.320    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0792    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00010244

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366555 pfam01284, MARVEL, Membrane-associating domain. MARVEL...  79.3    4e-20


>CDD:366555 pfam01284, MARVEL, Membrane-associating domain.  MARVEL domain-containing 
proteins are often found in lipid-associating proteins 
- such as Occludin and MAL family proteins. It may be 
part of the machinery of membrane apposition events, such 
as transport vesicle biogenesis.
Length=136

 Score = 79.3 bits (196),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 16/148 (11%)

Query  2    ALKGIQLGLRAWEFVFSLLVMALIGNIIAMAFAGNPATINYSMFTATFSIISLFYLVPAS  61
             L      LR  + VF+++V+ LI ++IA A    P+ +N+++F A FS +   + +   
Sbjct  1    FLLTPLGILRILQLVFAIIVLGLIASLIAYAG-SYPSAVNFAVFVAVFSFLIALFFLLLY  59

Query  62   INLN----WAIHPIIMIVLDVLNNIFFLTCAIALAARLECHSCSNDEYTLHNEITNGAHN  117
            +           P+I ++ D L  +F+L   IALAA L  HS              G+ +
Sbjct  60   LFGYSYFPSIAWPLIDLIFDALAALFWLAAFIALAAALRGHSE-----------NQGSGD  108

Query  118  RQKRCREAQASVAFLWFAWAGYMASTII  145
              +RCR AQA++AF +FAW  ++AS ++
Sbjct  109  LTRRCRAAQAAIAFGFFAWLLFLASAVL  136



Lambda      K        H        a         alpha
   0.329    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00017037

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.125    0.322    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00010238

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366555 pfam01284, MARVEL, Membrane-associating domain. MARVEL...  79.3    4e-20


>CDD:366555 pfam01284, MARVEL, Membrane-associating domain.  MARVEL domain-containing 
proteins are often found in lipid-associating proteins 
- such as Occludin and MAL family proteins. It may be 
part of the machinery of membrane apposition events, such 
as transport vesicle biogenesis.
Length=136

 Score = 79.3 bits (196),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 16/148 (11%)

Query  2    ALKGIQLGLRAWEFVFSLLVMALIGNIIAMAFAGNPATINYSMFTATFSIISLFYLVPAS  61
             L      LR  + VF+++V+ LI ++IA A    P+ +N+++F A FS +   + +   
Sbjct  1    FLLTPLGILRILQLVFAIIVLGLIASLIAYAG-SYPSAVNFAVFVAVFSFLIALFFLLLY  59

Query  62   INLN----WAIHPIIMIVLDVLNNIFFLTCAIALAARLECHSCSNDEYTLHNEITNGAHN  117
            +           P+I ++ D L  +F+L   IALAA L  HS              G+ +
Sbjct  60   LFGYSYFPSIAWPLIDLIFDALAALFWLAAFIALAAALRGHSE-----------NQGSGD  108

Query  118  RQKRCREAQASVAFLWFAWAGYMASTII  145
              +RCR AQA++AF +FAW  ++AS ++
Sbjct  109  LTRRCRAAQAAIAFGFFAWLLFLASAVL  136



Lambda      K        H        a         alpha
   0.329    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00010235

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366555 pfam01284, MARVEL, Membrane-associating domain. MARVEL...  79.3    4e-20


>CDD:366555 pfam01284, MARVEL, Membrane-associating domain.  MARVEL domain-containing 
proteins are often found in lipid-associating proteins 
- such as Occludin and MAL family proteins. It may be 
part of the machinery of membrane apposition events, such 
as transport vesicle biogenesis.
Length=136

 Score = 79.3 bits (196),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 16/148 (11%)

Query  2    ALKGIQLGLRAWEFVFSLLVMALIGNIIAMAFAGNPATINYSMFTATFSIISLFYLVPAS  61
             L      LR  + VF+++V+ LI ++IA A    P+ +N+++F A FS +   + +   
Sbjct  1    FLLTPLGILRILQLVFAIIVLGLIASLIAYAG-SYPSAVNFAVFVAVFSFLIALFFLLLY  59

Query  62   INLN----WAIHPIIMIVLDVLNNIFFLTCAIALAARLECHSCSNDEYTLHNEITNGAHN  117
            +           P+I ++ D L  +F+L   IALAA L  HS              G+ +
Sbjct  60   LFGYSYFPSIAWPLIDLIFDALAALFWLAAFIALAAALRGHSE-----------NQGSGD  108

Query  118  RQKRCREAQASVAFLWFAWAGYMASTII  145
              +RCR AQA++AF +FAW  ++AS ++
Sbjct  109  LTRRCRAAQAAIAFGFFAWLLFLASAVL  136



Lambda      K        H        a         alpha
   0.329    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00010236

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366555 pfam01284, MARVEL, Membrane-associating domain. MARVEL...  79.3    4e-20


>CDD:366555 pfam01284, MARVEL, Membrane-associating domain.  MARVEL domain-containing 
proteins are often found in lipid-associating proteins 
- such as Occludin and MAL family proteins. It may be 
part of the machinery of membrane apposition events, such 
as transport vesicle biogenesis.
Length=136

 Score = 79.3 bits (196),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 16/148 (11%)

Query  2    ALKGIQLGLRAWEFVFSLLVMALIGNIIAMAFAGNPATINYSMFTATFSIISLFYLVPAS  61
             L      LR  + VF+++V+ LI ++IA A    P+ +N+++F A FS +   + +   
Sbjct  1    FLLTPLGILRILQLVFAIIVLGLIASLIAYAG-SYPSAVNFAVFVAVFSFLIALFFLLLY  59

Query  62   INLN----WAIHPIIMIVLDVLNNIFFLTCAIALAARLECHSCSNDEYTLHNEITNGAHN  117
            +           P+I ++ D L  +F+L   IALAA L  HS              G+ +
Sbjct  60   LFGYSYFPSIAWPLIDLIFDALAALFWLAAFIALAAALRGHSE-----------NQGSGD  108

Query  118  RQKRCREAQASVAFLWFAWAGYMASTII  145
              +RCR AQA++AF +FAW  ++AS ++
Sbjct  109  LTRRCRAAQAAIAFGFFAWLLFLASAVL  136



Lambda      K        H        a         alpha
   0.329    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00010237

Length=163
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366555 pfam01284, MARVEL, Membrane-associating domain. MARVEL...  74.7    2e-18


>CDD:366555 pfam01284, MARVEL, Membrane-associating domain.  MARVEL domain-containing 
proteins are often found in lipid-associating proteins 
- such as Occludin and MAL family proteins. It may be 
part of the machinery of membrane apposition events, such 
as transport vesicle biogenesis.
Length=136

 Score = 74.7 bits (184),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 16/137 (12%)

Query  1    MQFVFSLLVMALIGNIIAMAFAGNPATINYSMFTATFSIISLFYLVPASI----NLNWAI  56
            +Q VF+++V+ LI ++IA A    P+ +N+++F A FS +   + +   +          
Sbjct  12   LQLVFAIIVLGLIASLIAYAG-SYPSAVNFAVFVAVFSFLIALFFLLLYLFGYSYFPSIA  70

Query  57   HPIIMIVLDVLNNIFFLTCAIALAARLECHSCSNDEYTLHNEITNGAHNRQKRCREAQAS  116
             P+I ++ D L  +F+L   IALAA L  HS              G+ +  +RCR AQA+
Sbjct  71   WPLIDLIFDALAALFWLAAFIALAAALRGHSE-----------NQGSGDLTRRCRAAQAA  119

Query  117  VAFLWFAWAGYMASTII  133
            +AF +FAW  ++AS ++
Sbjct  120  IAFGFFAWLLFLASAVL  136



Lambda      K        H        a         alpha
   0.330    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00010239

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.125    0.322    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00010240

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366555 pfam01284, MARVEL, Membrane-associating domain. MARVEL...  79.3    4e-20


>CDD:366555 pfam01284, MARVEL, Membrane-associating domain.  MARVEL domain-containing 
proteins are often found in lipid-associating proteins 
- such as Occludin and MAL family proteins. It may be 
part of the machinery of membrane apposition events, such 
as transport vesicle biogenesis.
Length=136

 Score = 79.3 bits (196),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 16/148 (11%)

Query  2    ALKGIQLGLRAWEFVFSLLVMALIGNIIAMAFAGNPATINYSMFTATFSIISLFYLVPAS  61
             L      LR  + VF+++V+ LI ++IA A    P+ +N+++F A FS +   + +   
Sbjct  1    FLLTPLGILRILQLVFAIIVLGLIASLIAYAG-SYPSAVNFAVFVAVFSFLIALFFLLLY  59

Query  62   INLN----WAIHPIIMIVLDVLNNIFFLTCAIALAARLECHSCSNDEYTLHNEITNGAHN  117
            +           P+I ++ D L  +F+L   IALAA L  HS              G+ +
Sbjct  60   LFGYSYFPSIAWPLIDLIFDALAALFWLAAFIALAAALRGHSE-----------NQGSGD  108

Query  118  RQKRCREAQASVAFLWFAWAGYMASTII  145
              +RCR AQA++AF +FAW  ++AS ++
Sbjct  109  LTRRCRAAQAAIAFGFFAWLLFLASAVL  136



Lambda      K        H        a         alpha
   0.329    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00010241

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366555 pfam01284, MARVEL, Membrane-associating domain. MARVEL...  79.3    4e-20


>CDD:366555 pfam01284, MARVEL, Membrane-associating domain.  MARVEL domain-containing 
proteins are often found in lipid-associating proteins 
- such as Occludin and MAL family proteins. It may be 
part of the machinery of membrane apposition events, such 
as transport vesicle biogenesis.
Length=136

 Score = 79.3 bits (196),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 16/148 (11%)

Query  2    ALKGIQLGLRAWEFVFSLLVMALIGNIIAMAFAGNPATINYSMFTATFSIISLFYLVPAS  61
             L      LR  + VF+++V+ LI ++IA A    P+ +N+++F A FS +   + +   
Sbjct  1    FLLTPLGILRILQLVFAIIVLGLIASLIAYAG-SYPSAVNFAVFVAVFSFLIALFFLLLY  59

Query  62   INLN----WAIHPIIMIVLDVLNNIFFLTCAIALAARLECHSCSNDEYTLHNEITNGAHN  117
            +           P+I ++ D L  +F+L   IALAA L  HS              G+ +
Sbjct  60   LFGYSYFPSIAWPLIDLIFDALAALFWLAAFIALAAALRGHSE-----------NQGSGD  108

Query  118  RQKRCREAQASVAFLWFAWAGYMASTII  145
              +RCR AQA++AF +FAW  ++AS ++
Sbjct  109  LTRRCRAAQAAIAFGFFAWLLFLASAVL  136



Lambda      K        H        a         alpha
   0.329    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00010242

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366555 pfam01284, MARVEL, Membrane-associating domain. MARVEL...  79.3    4e-20


>CDD:366555 pfam01284, MARVEL, Membrane-associating domain.  MARVEL domain-containing 
proteins are often found in lipid-associating proteins 
- such as Occludin and MAL family proteins. It may be 
part of the machinery of membrane apposition events, such 
as transport vesicle biogenesis.
Length=136

 Score = 79.3 bits (196),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 16/148 (11%)

Query  2    ALKGIQLGLRAWEFVFSLLVMALIGNIIAMAFAGNPATINYSMFTATFSIISLFYLVPAS  61
             L      LR  + VF+++V+ LI ++IA A    P+ +N+++F A FS +   + +   
Sbjct  1    FLLTPLGILRILQLVFAIIVLGLIASLIAYAG-SYPSAVNFAVFVAVFSFLIALFFLLLY  59

Query  62   INLN----WAIHPIIMIVLDVLNNIFFLTCAIALAARLECHSCSNDEYTLHNEITNGAHN  117
            +           P+I ++ D L  +F+L   IALAA L  HS              G+ +
Sbjct  60   LFGYSYFPSIAWPLIDLIFDALAALFWLAAFIALAAALRGHSE-----------NQGSGD  108

Query  118  RQKRCREAQASVAFLWFAWAGYMASTII  145
              +RCR AQA++AF +FAW  ++AS ++
Sbjct  109  LTRRCRAAQAAIAFGFFAWLLFLASAVL  136



Lambda      K        H        a         alpha
   0.329    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00010243

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366555 pfam01284, MARVEL, Membrane-associating domain. MARVEL...  79.3    4e-20


>CDD:366555 pfam01284, MARVEL, Membrane-associating domain.  MARVEL domain-containing 
proteins are often found in lipid-associating proteins 
- such as Occludin and MAL family proteins. It may be 
part of the machinery of membrane apposition events, such 
as transport vesicle biogenesis.
Length=136

 Score = 79.3 bits (196),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 16/148 (11%)

Query  2    ALKGIQLGLRAWEFVFSLLVMALIGNIIAMAFAGNPATINYSMFTATFSIISLFYLVPAS  61
             L      LR  + VF+++V+ LI ++IA A    P+ +N+++F A FS +   + +   
Sbjct  1    FLLTPLGILRILQLVFAIIVLGLIASLIAYAG-SYPSAVNFAVFVAVFSFLIALFFLLLY  59

Query  62   INLN----WAIHPIIMIVLDVLNNIFFLTCAIALAARLECHSCSNDEYTLHNEITNGAHN  117
            +           P+I ++ D L  +F+L   IALAA L  HS              G+ +
Sbjct  60   LFGYSYFPSIAWPLIDLIFDALAALFWLAAFIALAAALRGHSE-----------NQGSGD  108

Query  118  RQKRCREAQASVAFLWFAWAGYMASTII  145
              +RCR AQA++AF +FAW  ++AS ++
Sbjct  109  LTRRCRAAQAAIAFGFFAWLLFLASAVL  136



Lambda      K        H        a         alpha
   0.329    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00010245

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00010246

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00010247

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00010248

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.123    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00010249

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00017041

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00010250

Length=430


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521459360


Query= TCONS_00017042

Length=568


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 711347728


Query= TCONS_00010251

Length=416


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 507942834


Query= TCONS_00010252

Length=630


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00010253

Length=430


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521459360


Query= TCONS_00010254

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00010255

Length=599


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 757674996


Query= TCONS_00010256

Length=430


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521459360


Query= TCONS_00010257

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00017043

Length=641


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 808184920


Query= TCONS_00010261

Length=724


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 916745760


Query= TCONS_00010258

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00010259

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00010260

Length=724


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 916745760


Query= TCONS_00017044

Length=724


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0736    0.140     1.90     42.6     43.6 

Effective search space used: 916745760


Query= TCONS_00017045

Length=724


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 916745760


Query= TCONS_00017046

Length=665


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 843579880


Query= TCONS_00017047

Length=601


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.123    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 760663852


Query= TCONS_00010262

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00010263

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00017048

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00017049

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00010267

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00010265

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00017050

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00010268

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00010266

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00010269

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00017051

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00010272

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00010273

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  126     3e-36
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            86.4    1e-20
CDD:430091 pfam08587, UBA_2, Ubiquitin associated domain (UBA). T...  66.0    4e-15


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 126 bits (319),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 56/181 (31%), Positives = 81/181 (45%), Gaps = 42/181 (23%)

Query  1    MVLEYAE-RELFDYLVKRGRCNDAEARKFFQQIICAVEYCHRHKIVHRDLKPENLLIDKD  59
            +VLEY E   LFD L ++G  ++ EA+   +QI+  +E                      
Sbjct  75   LVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES---------------------  113

Query  60   KNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVLLVG  119
                            G+ L T  G+P Y APEV+ G  Y GP+VDVWS G ILY LL G
Sbjct  114  ----------------GSSLTTFVGTPWYMAPEVLGGNPY-GPKVDVWSLGCILYELLTG  156

Query  120  RLPFDDDYIPALFKKIAAG---NFHMPPYISSGAARLIRSMLQVHPVHRITIPEIRQDPW  176
            + PF       +++ I         +P  +S  A  L++ +L+  P  R+T  +  Q PW
Sbjct  157  KPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPW  216

Query  177  F  177
            F
Sbjct  217  F  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 86.4 bits (215),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 51/183 (28%), Positives = 79/183 (43%), Gaps = 12/183 (7%)

Query  1    MVLEYAER-ELFDYLVKRGRCNDAEAR-KFFQQIICAVEYCHRHKIVHRDLKPENLLIDK  58
            +V EY    +L D+L K  R    +       QI   +EY      VHRDL   N L+ +
Sbjct  78   IVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLESKNFVHRDLAARNCLVSE  137

Query  59   DKNVKIADFGLS-NIMTDGNFLKTSCG--SPNYAAPEVISGKLYAGPEVDVWSCGVILY-  114
            +  VKI+DFGLS +I  D  + K   G     + APE +    +   + DVWS GV+L+ 
Sbjct  138  NLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLKDGKFT-SKSDVWSFGVLLWE  196

Query  115  VLLVGRLPFDDDYIPA--LFKKIAAGN-FHMPPYISSGAARLIRSMLQVHPVHRITIPEI  171
            +  +G  P+    +    + + +  G     P         L++      P  R T  E+
Sbjct  197  IFTLGEQPYPG--MSNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSEL  254

Query  172  RQD  174
             +D
Sbjct  255  VED  257


>CDD:430091 pfam08587, UBA_2, Ubiquitin associated domain (UBA).  This is 
a UBA (ubiquitin associated) domain. Ubiquitin is involved 
in intracellular proteolysis.
Length=45

 Score = 66.0 bits (162),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 3/45 (7%)

Query  220  IHQIAISKLERSMGYAREDIEDALKSPEPS---AIKDAFFIIVEN  261
            I +  +SKL ++MGY +++I +AL+ PEPS    IKDA+ ++ EN
Sbjct  1    IDEDVVSKLSKTMGYDKDEIYEALERPEPSQSNEIKDAYLLMKEN  45



Lambda      K        H        a         alpha
   0.322    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00010275

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00010274

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00017052

Length=221


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00010276

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00010277

Length=605


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 766641564


Query= TCONS_00010278

Length=366


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00010279

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00010280

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00010281

Length=296


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.122    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00010282

Length=635


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 799336180


Query= TCONS_00017053

Length=635


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 799336180


Query= TCONS_00010283

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00010284

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465330 pfam16983, MFS_MOT1, Molybdate transporter of MFS supe...  132     2e-38


>CDD:465330 pfam16983, MFS_MOT1, Molybdate transporter of MFS superfamily. 
 MFS_MOT1 is a family of molybdenate transporters. Molybdenum 
is an essential element that is taken up into the cell in 
the oxyanion molybdate. Molybdenum is used in the form of 
molybdopterin-cofactor, which participates in the active site 
of enzymes involved in key reactions of carbon, nitrogen, 
and sulfur metabolism.
Length=115

 Score = 132 bits (336),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 55/115 (48%), Positives = 71/115 (62%), Gaps = 0/115 (0%)

Query  23   SEVSGSLGDLGTFLPIAIALAVNGTVSLSSTLIFSGSFNILTGLFFGIPLPVQPMKAIAA  82
             E+SG+LG LGT LP+ IALA+    S +S L+  G  N+LTGLF G+P+ VQPMK  A 
Sbjct  1    GELSGALGQLGTLLPLVIALALLAGDSPTSLLLSVGLMNLLTGLFGGMPMCVQPMKHGAG  60

Query  83   VAIARSFSNGTIAAAGIFVGACILFFSVTGLLHWFANAIPIPVIKGIQVGAGLSL  137
               A+        AAGI +G  +L   +TGLL      IP+PV+ GIQ+GAGL L
Sbjct  61   GLAAQYRFGARTGAAGILLGLVLLLLGLTGLLVRLLRLIPLPVLGGIQLGAGLEL  115


 Score = 111 bits (280),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 58/126 (46%), Positives = 79/126 (63%), Gaps = 16/126 (13%)

Query  224  GALDAGVGQIPLTTLNSIVAVVHLAGDLLPRVKTPSITAIGLSVAGMNLVGCWFGAMPVC  283
            G L   +GQ+  T L  ++A+  LAGD        S T++ LSV  MNL+   FG MP+C
Sbjct  1    GELSGALGQLG-TLLPLVIALALLAGD--------SPTSLLLSVGLMNLLTGLFGGMPMC  51

Query  284  -----HGSGGLAAQYRFGARSGSSVIVLGLLKLLIGVFFGETLVGLLKRFPSALLGVMVI  338
                 HG+GGLAAQYRFGAR+G++ I+LGL+ LL+G+     LV LL+  P  +LG + +
Sbjct  52   VQPMKHGAGGLAAQYRFGARTGAAGILLGLVLLLLGLTG--LLVRLLRLIPLPVLGGIQL  109

Query  339  AAGLEL  344
             AGLEL
Sbjct  110  GAGLEL  115



Lambda      K        H        a         alpha
   0.326    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00017054

Length=2150


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2699938614


Query= TCONS_00010285

Length=2150


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2699938614


Query= TCONS_00010287

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00017055

Length=375


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00017056

Length=2150


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2699938614


Query= TCONS_00010286

Length=2150


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2699938614


Query= TCONS_00017057

Length=472


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00017058

Length=2150


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2699938614


Query= TCONS_00010289

Length=1922


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2436604328


Query= TCONS_00017059

Length=2150


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 2699938614


Query= TCONS_00017060

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  110     3e-29


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 110 bits (278),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 95/247 (38%), Gaps = 52/247 (21%)

Query  105  NRILSYTAGRILGGTSMINGMTYLRADKPEIDAWEAL-GAKGWNWGSLWPYYLRTEKFSP  163
             R +   AG  +GG S +N    +R     +D W +  G +GW +    PY  + E    
Sbjct  16   GRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEG---  72

Query  164  PLGWQVGAGADYVPDLHGRTGSVDVCFSMELSRVGFWERVRDAWRVLGVNW---NRDPNG  220
                           L   T  ++      L++      +  A   LG       R+ NG
Sbjct  73   --------------PLGVTTKGIEESP---LNQA-----LLKAAEELGYPVEAVPRNSNG  110

Query  221  GSVAGVSVWPQTIDCQEDVRCSSAKAFYYPVEGRENLRVVKGT-VRRILWADTRGGEHVA  279
                G       + C    + S+A+ +  P   R NLR++ G    +I+     G    A
Sbjct  111  CHYCGFCG----LGCPTGAKQSTARTWLRPALER-NLRILTGAKAEKIIILGRGG---RA  162

Query  280  AGVEYLD-ENGQMRTATARKEVILSAGALRTPPILEASGVGDADRLRGLGIETRIDLPGV  338
             GVE  D   G  R  TA KEV+++AGAL TPP+L  SG+G                  V
Sbjct  163  VGVEARDGGGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH-------------PV  209

Query  339  GENLQDQ  345
            G+NLQ  
Sbjct  210  GKNLQLH  216



Lambda      K        H        a         alpha
   0.316    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00017061

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  110     3e-29


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 110 bits (278),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 95/247 (38%), Gaps = 52/247 (21%)

Query  105  NRILSYTAGRILGGTSMINGMTYLRADKPEIDAWEAL-GAKGWNWGSLWPYYLRTEKFSP  163
             R +   AG  +GG S +N    +R     +D W +  G +GW +    PY  + E    
Sbjct  16   GRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEG---  72

Query  164  PLGWQVGAGADYVPDLHGRTGSVDVCFSMELSRVGFWERVRDAWRVLGVNW---NRDPNG  220
                           L   T  ++      L++      +  A   LG       R+ NG
Sbjct  73   --------------PLGVTTKGIEESP---LNQA-----LLKAAEELGYPVEAVPRNSNG  110

Query  221  GSVAGVSVWPQTIDCQEDVRCSSAKAFYYPVEGRENLRVVKGT-VRRILWADTRGGEHVA  279
                G       + C    + S+A+ +  P   R NLR++ G    +I+     G    A
Sbjct  111  CHYCGFCG----LGCPTGAKQSTARTWLRPALER-NLRILTGAKAEKIIILGRGG---RA  162

Query  280  AGVEYLD-ENGQMRTATARKEVILSAGALRTPPILEASGVGDADRLRGLGIETRIDLPGV  338
             GVE  D   G  R  TA KEV+++AGAL TPP+L  SG+G                  V
Sbjct  163  VGVEARDGGGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH-------------PV  209

Query  339  GENLQDQ  345
            G+NLQ  
Sbjct  210  GKNLQLH  216



Lambda      K        H        a         alpha
   0.316    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00010290

Length=599
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  146     5e-42
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  113     2e-29


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 146 bits (370),  Expect = 5e-42, Method: Composition-based stats.
 Identities = 57/145 (39%), Positives = 74/145 (51%), Gaps = 5/145 (3%)

Query  448  PFSRGSVHLSSTRREDINAPSIDTNFFQVDFDLQTEMAIGRLAQSFWEQGP---VKSLHP  504
            P SRG V LSS   +    P ID N+     DL    A  RLA+             L P
Sbjct  1    PRSRGRVTLSS--SDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGVELTP  58

Query  505  VPMPGRALDDNATDTEWTAFTKETFGPNYHPVGTASMMARELGGVVDSRLKVYGTENVRV  564
             P+P  +     +D E  A+ +     +YHP+GT  M A     VVD  L+V+G +N+RV
Sbjct  59   GPVPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPDDAVVDPDLRVHGVDNLRV  118

Query  565  VDASVIPLQVSGHLTATLYAVAERA  589
            VDASV P   SG+ T T+YA+AERA
Sbjct  119  VDASVFPSSPSGNPTLTIYALAERA  143


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 113 bits (286),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 95/247 (38%), Gaps = 52/247 (21%)

Query  105  NRILSYTAGRILGGTSMINGMTYLRADKPEIDAWEAL-GAKGWNWGSLWPYYLRTEKFSP  163
             R +   AG  +GG S +N    +R     +D W +  G +GW +    PY  + E    
Sbjct  16   GRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEG---  72

Query  164  PLGWQVGAGADYVPDLHGRTGSVDVCFSMELSRVGFWERVRDAWRVLGVNW---NRDPNG  220
                           L   T  ++      L++      +  A   LG       R+ NG
Sbjct  73   --------------PLGVTTKGIEESP---LNQA-----LLKAAEELGYPVEAVPRNSNG  110

Query  221  GSVAGVSVWPQTIDCQEDVRCSSAKAFYYPVEGRENLRVVKGT-VRRILWADTRGGEHVA  279
                G       + C    + S+A+ +  P   R NLR++ G    +I+     G    A
Sbjct  111  CHYCGFCG----LGCPTGAKQSTARTWLRPALER-NLRILTGAKAEKIIILGRGG---RA  162

Query  280  AGVEYLD-ENGQMRTATARKEVILSAGALRTPPILEASGVGDADRLRGLGIETRIDLPGV  338
             GVE  D   G  R  TA KEV+++AGAL TPP+L  SG+G                  V
Sbjct  163  VGVEARDGGGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH-------------PV  209

Query  339  GENLQDQ  345
            G+NLQ  
Sbjct  210  GKNLQLH  216



Lambda      K        H        a         alpha
   0.316    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 757674996


Query= TCONS_00017062

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  114     8e-30


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 114 bits (288),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 95/247 (38%), Gaps = 52/247 (21%)

Query  105  NRILSYTAGRILGGTSMINGMTYLRADKPEIDAWEAL-GAKGWNWGSLWPYYLRTEKFSP  163
             R +   AG  +GG S +N    +R     +D W +  G +GW +    PY  + E    
Sbjct  16   GRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEG---  72

Query  164  PLGWQVGAGADYVPDLHGRTGSVDVCFSMELSRVGFWERVRDAWRVLGVNW---NRDPNG  220
                           L   T  ++      L++      +  A   LG       R+ NG
Sbjct  73   --------------PLGVTTKGIEESP---LNQA-----LLKAAEELGYPVEAVPRNSNG  110

Query  221  GSVAGVSVWPQTIDCQEDVRCSSAKAFYYPVEGRENLRVVKGT-VRRILWADTRGGEHVA  279
                G       + C    + S+A+ +  P   R NLR++ G    +I+     G    A
Sbjct  111  CHYCGFCG----LGCPTGAKQSTARTWLRPALER-NLRILTGAKAEKIIILGRGG---RA  162

Query  280  AGVEYLD-ENGQMRTATARKEVILSAGALRTPPILEASGVGDADRLRGLGIETRIDLPGV  338
             GVE  D   G  R  TA KEV+++AGAL TPP+L  SG+G                  V
Sbjct  163  VGVEARDGGGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH-------------PV  209

Query  339  GENLQDQ  345
            G+NLQ  
Sbjct  210  GKNLQLH  216



Lambda      K        H        a         alpha
   0.316    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00010291

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425499 pfam00168, C2, C2 domain                                   83.5    5e-20


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 83.5 bits (207),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 32/107 (30%), Positives = 52/107 (49%), Gaps = 6/107 (6%)

Query  29   GTLVAVIDRAKNLPNRKTMGKQNPYCAARLGKEAKKTETD-LRGGQTPKWDQELRFTVHE  87
            G L   +  AKNLP +   G  +PY    L    +K +T  ++    P W++   F+V +
Sbjct  1    GRLTVTVIEAKNLPPKDGNGTSDPYVKVYLLDGKQKKKTKVVKNTLNPVWNETFTFSVPD  60

Query  88   SPDYFRLKVSVFNDDK--KTDLIGETWIDLKDLIIPGGSQSDQWHPL  132
              +   L++ V++ D+  + D IGE  I L +L    G   D W+PL
Sbjct  61   PENA-VLEIEVYDYDRFGRDDFIGEVRIPLSEL--DSGEGLDGWYPL  104



Lambda      K        H        a         alpha
   0.311    0.128    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 762158280


Query= TCONS_00017063

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00017064

Length=427


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00010294

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00017065

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00017066

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e....  99.4    2e-26


>CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e.  This 
family includes L22 from prokaryotes and chloroplasts and L17 
from eukaryotes.
Length=104

 Score = 99.4 bits (249),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 60/128 (47%), Gaps = 24/128 (19%)

Query  185  SKSHWFKTSVKKLGPLARQIAGKNIDEAMLQMRFSKKKVAKDVLEHLEHAKNVAIVRSGM  244
            +K+   + S KK   +A  I G ++DEA+  ++FS KK AK VL+ L+ A          
Sbjct  1    AKARNLRISPKKARLVADLIRGMSVDEALAILKFSPKKAAKIVLKLLKSAIA--------  52

Query  245  GLGNAADQKPITITLKNGERKTITNPSSIYIAQAWVNRGPYGVDYDHRARGQINRLRPPY  304
                            N E K   +  ++YI++  V++GP       RARG+   +R   
Sbjct  53   ----------------NAENKGNLDVDNLYISEIQVDKGPTLKRIRPRARGRAGPIRKRT  96

Query  305  TSLSVLLK  312
            + ++V+LK
Sbjct  97   SHITVVLK  104



Lambda      K        H        a         alpha
   0.315    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00010296

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  61.8    9e-12


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 61.8 bits (151),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 52/215 (24%), Positives = 73/215 (34%), Gaps = 50/215 (23%)

Query  154  LFLGRHGEGYHNVAERRYGREAWDCYWSLLDGDDNGTWVDARLTPVGIAQAETAHRAWET  213
            L+L RHGE   N+  R  G                    D+ LT +G  QAE        
Sbjct  1    LYLVRHGETEWNLEGRFQG------------------RTDSPLTELGREQAEALAERLAG  42

Query  214  QIESKIPSPQSYYVSPLNRCLATANITFRGLKMPHTEPFRPVVKELLRETI-----GLHT  268
            +    I      Y SPL R   TA I    L +P        +   LRE       GL  
Sbjct  43   EPFDAI------YSSPLKRARQTAEIIAEALGLP------VEIDPRLREIDFGDWEGLTF  90

Query  269  CDSRSSKAAIQAEYPEYIIEDGFAEEDPLYDPKLRESDTARDARLRDLLQNIFTHDKNTF  328
                     I   YPE    D +  +   Y P   ES     AR+R  L+ +        
Sbjct  91   -------EEIAERYPEEY--DAWLADPADYRPPGGESLADVRARVRAALEELAARHPGKT  141

Query  329  ISLTAHSGAITSILQ------VTGHRKFALATGAV  357
            + + +H G I ++L       +   R+F L   ++
Sbjct  142  VLVVSHGGVIRALLAHLLGLPLEALRRFPLDNASL  176



Lambda      K        H        a         alpha
   0.319    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00010295

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e....  96.3    2e-26


>CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e.  This 
family includes L22 from prokaryotes and chloroplasts and L17 
from eukaryotes.
Length=104

 Score = 96.3 bits (241),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 60/128 (47%), Gaps = 24/128 (19%)

Query  45   SKSHWFKTSVKKLGPLARQIAGKNIDEAMLQMRFSKKKVAKDVLEHLEHAKNVAIVRSGM  104
            +K+   + S KK   +A  I G ++DEA+  ++FS KK AK VL+ L+ A          
Sbjct  1    AKARNLRISPKKARLVADLIRGMSVDEALAILKFSPKKAAKIVLKLLKSAIA--------  52

Query  105  GLGNAADQKPITITLKNGERKTITNPSSIYIAQAWVNRGPYGVDYDHRARGQINRLRPPY  164
                            N E K   +  ++YI++  V++GP       RARG+   +R   
Sbjct  53   ----------------NAENKGNLDVDNLYISEIQVDKGPTLKRIRPRARGRAGPIRKRT  96

Query  165  TSLSVLLK  172
            + ++V+LK
Sbjct  97   SHITVVLK  104



Lambda      K        H        a         alpha
   0.319    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00017067

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e....  99.4    2e-26


>CDD:459725 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e.  This 
family includes L22 from prokaryotes and chloroplasts and L17 
from eukaryotes.
Length=104

 Score = 99.4 bits (249),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 60/128 (47%), Gaps = 24/128 (19%)

Query  185  SKSHWFKTSVKKLGPLARQIAGKNIDEAMLQMRFSKKKVAKDVLEHLEHAKNVAIVRSGM  244
            +K+   + S KK   +A  I G ++DEA+  ++FS KK AK VL+ L+ A          
Sbjct  1    AKARNLRISPKKARLVADLIRGMSVDEALAILKFSPKKAAKIVLKLLKSAIA--------  52

Query  245  GLGNAADQKPITITLKNGERKTITNPSSIYIAQAWVNRGPYGVDYDHRARGQINRLRPPY  304
                            N E K   +  ++YI++  V++GP       RARG+   +R   
Sbjct  53   ----------------NAENKGNLDVDNLYISEIQVDKGPTLKRIRPRARGRAGPIRKRT  96

Query  305  TSLSVLLK  312
            + ++V+LK
Sbjct  97   SHITVVLK  104



Lambda      K        H        a         alpha
   0.315    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00010297

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00010298

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00017068

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  61.1    9e-12


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 61.1 bits (149),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 52/215 (24%), Positives = 73/215 (34%), Gaps = 50/215 (23%)

Query  64   LFLGRHGEGYHNVAERRYGREAWDCYWSLLDGDDNGTWVDARLTPVGIAQAETAHRAWET  123
            L+L RHGE   N+  R  G                    D+ LT +G  QAE        
Sbjct  1    LYLVRHGETEWNLEGRFQG------------------RTDSPLTELGREQAEALAERLAG  42

Query  124  QIESKIPSPQSYYVSPLNRCLATANITFRGLKMPHTEPFRPVVKELLRETI-----GLHT  178
            +    I      Y SPL R   TA I    L +P        +   LRE       GL  
Sbjct  43   EPFDAI------YSSPLKRARQTAEIIAEALGLP------VEIDPRLREIDFGDWEGLTF  90

Query  179  CDSRSSKAAIQAEYPEYIIEDGFAEEDPLYDPKLRESDTARDARLRDLLQNIFTHDKNTF  238
                     I   YPE    D +  +   Y P   ES     AR+R  L+ +        
Sbjct  91   -------EEIAERYPEEY--DAWLADPADYRPPGGESLADVRARVRAALEELAARHPGKT  141

Query  239  ISLTAHSGAITSILQ------VTGHRKFALATGAV  267
            + + +H G I ++L       +   R+F L   ++
Sbjct  142  VLVVSHGGVIRALLAHLLGLPLEALRRFPLDNASL  176



Lambda      K        H        a         alpha
   0.318    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00010299

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00010301

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399029 pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH). Thi...  118     1e-32


>CDD:399029 pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH).  This family 
is made up of several eukaryotic phytanoyl-CoA dioxygenase 
(PhyH) proteins, ectoine hydroxylases and a number of bacterial 
deoxygenases. PhyH is a peroxisomal enzyme catalyzing 
the first step of phytanic acid alpha-oxidation. PhyH deficiency 
causes Refsum's disease (RD) which is an inherited neurological 
syndrome biochemically characterized by the accumulation 
of phytanic acid in plasma and tissues.
Length=213

 Score = 118 bits (298),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 89/283 (31%), Positives = 106/283 (37%), Gaps = 77/283 (27%)

Query  12   FRENGYLVIPGFLSPEDITSLLTETNKFLDDFPLESHPLTKFTTGDDETDENNTHVGDDY  71
            FRE+GYLVI GFLSPE++ +L  E  + LD                              
Sbjct  1    FREDGYLVIEGFLSPEEVAALRAEAERLLD-----------------------------R  31

Query  72   FLTSGDKIRFFFEPEAFSSTPDPATGKPTLLKPKQQAINKIGHALHSLSSPFEKVSLSAR  131
               SG     FF+ +A                    +I K  H LH    PF    L+  
Sbjct  32   AAESGPDKDDFFDEKAAGDETGLLEK----------SITKRDHFLH----PFYLADLAR-  76

Query  132  NAAIAKSLGFVDPRVLQSM----VICKQPGIGGAV-PPHRDSEFLYTRP-PSAVGWWFAL  185
              AI  S  +V   VLQSM     I KQPG GG V P H+D  FL TRP    V  W AL
Sbjct  77   --AILGSPVYV-ANVLQSMYQDLSIFKQPGTGGEVSPWHQDYTFLPTRPAELVVNVWIAL  133

Query  186  QDAGPGNATLGMWKGSHRQGIKRRFVRKVGENGKVLGTEFVENDGPKMPRGAEGDGQDPD  245
             DA   N  L +  GSH+                          GP   R  E D    D
Sbjct  134  DDATEENGCLRVIPGSHKWE-----------------------VGPLARRLPEDDYYAED  170

Query  246  QGPDVKDE-NFEILDIKAGSLVLIHGNVLHMSEKNTSPRSRFA  287
                 +DE     + +KAG  VL H  +LH S  N S  SR A
Sbjct  171  DEAPKRDEEPAVPVPMKAGDAVLFHPRLLHGSGANRSDGSRRA  213



Lambda      K        H        a         alpha
   0.316    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00017069

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00010303

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371174 pfam10639, TMEM234, Putative transmembrane family 234....  98.9    4e-27


>CDD:371174 pfam10639, TMEM234, Putative transmembrane family 234.  TMEM234 
is a family of putative inner membrane proteins. Many bacterial 
members are annotated as putative L-Ara4N-phosphoundecaprenol 
flippase subunit ArnE, and as inner membrane proteins. 
They may be transporters of the multi-drug-resistant superfamily.
Length=113

 Score = 98.9 bits (247),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 37/98 (38%), Positives = 54/98 (55%), Gaps = 9/98 (9%)

Query  128  KPKSTSSWLKTKIVTVFWTVFNLLRTPAYSVPLVINLTGSIWFFLLVGKHELSLTVPLAN  187
                    L+ K          L     Y +P ++N +GS+ FF  +G  +LSL VP+AN
Sbjct  25   VKSPLQFLLEFKF---------LFLRWKYLIPFLLNQSGSVVFFYTLGSTDLSLAVPIAN  75

Query  188  SSAFLFTVLGEWYVERKVIEKETWLGMALVLGGIGICV  225
            S +F+FTVL  W +  KV+ K+T+LGM LV+ G  +CV
Sbjct  76   SLSFVFTVLTGWLLGEKVLGKKTYLGMGLVVAGTALCV  113



Lambda      K        H        a         alpha
   0.315    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00010304

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.130    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00010305

Length=54
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371174 pfam10639, TMEM234, Putative transmembrane family 234....  56.9    2e-13


>CDD:371174 pfam10639, TMEM234, Putative transmembrane family 234.  TMEM234 
is a family of putative inner membrane proteins. Many bacterial 
members are annotated as putative L-Ara4N-phosphoundecaprenol 
flippase subunit ArnE, and as inner membrane proteins. 
They may be transporters of the multi-drug-resistant superfamily.
Length=113

 Score = 56.9 bits (138),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 26/47 (55%), Positives = 35/47 (74%), Gaps = 0/47 (0%)

Query  2    LSLTVPLANSSAFLFTVLGEWYVERKVIEKETWLGMALVLGGIGICV  48
            LSL VP+ANS +F+FTVL  W +  KV+ K+T+LGM LV+ G  +CV
Sbjct  67   LSLAVPIANSLSFVFTVLTGWLLGEKVLGKKTYLGMGLVVAGTALCV  113



Lambda      K        H        a         alpha
   0.322    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00010306

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460854 pfam03232, COQ7, Ubiquinone biosynthesis protein COQ7....  277     3e-96


>CDD:460854 pfam03232, COQ7, Ubiquinone biosynthesis protein COQ7.  Members 
of this family contain two repeats of about 90 amino acids, 
that contains two conserved motifs. One of these DXEXXH may 
be part of an enzyme active site.
Length=167

 Score = 277 bits (712),  Expect = 3e-96, Method: Composition-based stats.
 Identities = 97/180 (54%), Positives = 123/180 (68%), Gaps = 13/180 (7%)

Query  75   EYLDSALRVNQAGELAATLIYAAQTPQVVRSHPHLRPLMKHMYDQEVGHFSTFNKLIAKH  134
              LD  LRV+ AGEL A  IYA Q   V+R  P LRPL+KHM+DQE  H +TFN+L+A+H
Sbjct  1    ALLDRILRVDHAGELGAVRIYAGQLA-VLRRDPELRPLIKHMWDQEKEHLATFNELLAEH  59

Query  135  RIRPTVMYPIWKVAATFLGWSTAAMGREAAMACTEAVETEIGTHYNDQVREILSWEADAK  194
            R+RPT++ P+WKVA   LG  TA +G+EAAMACTEAVET IG HYNDQ+RE+   E    
Sbjct  60   RVRPTLLLPLWKVAGFALGAGTALLGKEAAMACTEAVETVIGEHYNDQLRELPEKEE---  116

Query  195  SRGEELDDELKEMLVTFRRIRDEELEHLDHAIENDAKEAQPYDPLVNVIRLGCRAAIKIS  254
                  D EL+ ++    + RD+ELEHLD A+EN A+EA  Y  L NVI+ GCR AI ++
Sbjct  117  ------DKELRAII---EQFRDDELEHLDTAVENGAEEAPAYPLLTNVIKAGCRVAIWLA  167



Lambda      K        H        a         alpha
   0.316    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00010307

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460854 pfam03232, COQ7, Ubiquinone biosynthesis protein COQ7....  277     3e-96


>CDD:460854 pfam03232, COQ7, Ubiquinone biosynthesis protein COQ7.  Members 
of this family contain two repeats of about 90 amino acids, 
that contains two conserved motifs. One of these DXEXXH may 
be part of an enzyme active site.
Length=167

 Score = 277 bits (712),  Expect = 3e-96, Method: Composition-based stats.
 Identities = 97/180 (54%), Positives = 123/180 (68%), Gaps = 13/180 (7%)

Query  75   EYLDSALRVNQAGELAATLIYAAQTPQVVRSHPHLRPLMKHMYDQEVGHFSTFNKLIAKH  134
              LD  LRV+ AGEL A  IYA Q   V+R  P LRPL+KHM+DQE  H +TFN+L+A+H
Sbjct  1    ALLDRILRVDHAGELGAVRIYAGQLA-VLRRDPELRPLIKHMWDQEKEHLATFNELLAEH  59

Query  135  RIRPTVMYPIWKVAATFLGWSTAAMGREAAMACTEAVETEIGTHYNDQVREILSWEADAK  194
            R+RPT++ P+WKVA   LG  TA +G+EAAMACTEAVET IG HYNDQ+RE+   E    
Sbjct  60   RVRPTLLLPLWKVAGFALGAGTALLGKEAAMACTEAVETVIGEHYNDQLRELPEKEE---  116

Query  195  SRGEELDDELKEMLVTFRRIRDEELEHLDHAIENDAKEAQPYDPLVNVIRLGCRAAIKIS  254
                  D EL+ ++    + RD+ELEHLD A+EN A+EA  Y  L NVI+ GCR AI ++
Sbjct  117  ------DKELRAII---EQFRDDELEHLDTAVENGAEEAPAYPLLTNVIKAGCRVAIWLA  167



Lambda      K        H        a         alpha
   0.316    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00017071

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460854 pfam03232, COQ7, Ubiquinone biosynthesis protein COQ7....  277     3e-96


>CDD:460854 pfam03232, COQ7, Ubiquinone biosynthesis protein COQ7.  Members 
of this family contain two repeats of about 90 amino acids, 
that contains two conserved motifs. One of these DXEXXH may 
be part of an enzyme active site.
Length=167

 Score = 277 bits (712),  Expect = 3e-96, Method: Composition-based stats.
 Identities = 97/180 (54%), Positives = 123/180 (68%), Gaps = 13/180 (7%)

Query  75   EYLDSALRVNQAGELAATLIYAAQTPQVVRSHPHLRPLMKHMYDQEVGHFSTFNKLIAKH  134
              LD  LRV+ AGEL A  IYA Q   V+R  P LRPL+KHM+DQE  H +TFN+L+A+H
Sbjct  1    ALLDRILRVDHAGELGAVRIYAGQLA-VLRRDPELRPLIKHMWDQEKEHLATFNELLAEH  59

Query  135  RIRPTVMYPIWKVAATFLGWSTAAMGREAAMACTEAVETEIGTHYNDQVREILSWEADAK  194
            R+RPT++ P+WKVA   LG  TA +G+EAAMACTEAVET IG HYNDQ+RE+   E    
Sbjct  60   RVRPTLLLPLWKVAGFALGAGTALLGKEAAMACTEAVETVIGEHYNDQLRELPEKEE---  116

Query  195  SRGEELDDELKEMLVTFRRIRDEELEHLDHAIENDAKEAQPYDPLVNVIRLGCRAAIKIS  254
                  D EL+ ++    + RD+ELEHLD A+EN A+EA  Y  L NVI+ GCR AI ++
Sbjct  117  ------DKELRAII---EQFRDDELEHLDTAVENGAEEAPAYPLLTNVIKAGCRVAIWLA  167



Lambda      K        H        a         alpha
   0.316    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00010308

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460854 pfam03232, COQ7, Ubiquinone biosynthesis protein COQ7....  277     3e-96


>CDD:460854 pfam03232, COQ7, Ubiquinone biosynthesis protein COQ7.  Members 
of this family contain two repeats of about 90 amino acids, 
that contains two conserved motifs. One of these DXEXXH may 
be part of an enzyme active site.
Length=167

 Score = 277 bits (712),  Expect = 3e-96, Method: Composition-based stats.
 Identities = 97/180 (54%), Positives = 123/180 (68%), Gaps = 13/180 (7%)

Query  75   EYLDSALRVNQAGELAATLIYAAQTPQVVRSHPHLRPLMKHMYDQEVGHFSTFNKLIAKH  134
              LD  LRV+ AGEL A  IYA Q   V+R  P LRPL+KHM+DQE  H +TFN+L+A+H
Sbjct  1    ALLDRILRVDHAGELGAVRIYAGQLA-VLRRDPELRPLIKHMWDQEKEHLATFNELLAEH  59

Query  135  RIRPTVMYPIWKVAATFLGWSTAAMGREAAMACTEAVETEIGTHYNDQVREILSWEADAK  194
            R+RPT++ P+WKVA   LG  TA +G+EAAMACTEAVET IG HYNDQ+RE+   E    
Sbjct  60   RVRPTLLLPLWKVAGFALGAGTALLGKEAAMACTEAVETVIGEHYNDQLRELPEKEE---  116

Query  195  SRGEELDDELKEMLVTFRRIRDEELEHLDHAIENDAKEAQPYDPLVNVIRLGCRAAIKIS  254
                  D EL+ ++    + RD+ELEHLD A+EN A+EA  Y  L NVI+ GCR AI ++
Sbjct  117  ------DKELRAII---EQFRDDELEHLDTAVENGAEEAPAYPLLTNVIKAGCRVAIWLA  167



Lambda      K        H        a         alpha
   0.316    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00017072

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460854 pfam03232, COQ7, Ubiquinone biosynthesis protein COQ7....  277     3e-96


>CDD:460854 pfam03232, COQ7, Ubiquinone biosynthesis protein COQ7.  Members 
of this family contain two repeats of about 90 amino acids, 
that contains two conserved motifs. One of these DXEXXH may 
be part of an enzyme active site.
Length=167

 Score = 277 bits (712),  Expect = 3e-96, Method: Composition-based stats.
 Identities = 97/180 (54%), Positives = 123/180 (68%), Gaps = 13/180 (7%)

Query  75   EYLDSALRVNQAGELAATLIYAAQTPQVVRSHPHLRPLMKHMYDQEVGHFSTFNKLIAKH  134
              LD  LRV+ AGEL A  IYA Q   V+R  P LRPL+KHM+DQE  H +TFN+L+A+H
Sbjct  1    ALLDRILRVDHAGELGAVRIYAGQLA-VLRRDPELRPLIKHMWDQEKEHLATFNELLAEH  59

Query  135  RIRPTVMYPIWKVAATFLGWSTAAMGREAAMACTEAVETEIGTHYNDQVREILSWEADAK  194
            R+RPT++ P+WKVA   LG  TA +G+EAAMACTEAVET IG HYNDQ+RE+   E    
Sbjct  60   RVRPTLLLPLWKVAGFALGAGTALLGKEAAMACTEAVETVIGEHYNDQLRELPEKEE---  116

Query  195  SRGEELDDELKEMLVTFRRIRDEELEHLDHAIENDAKEAQPYDPLVNVIRLGCRAAIKIS  254
                  D EL+ ++    + RD+ELEHLD A+EN A+EA  Y  L NVI+ GCR AI ++
Sbjct  117  ------DKELRAII---EQFRDDELEHLDTAVENGAEEAPAYPLLTNVIKAGCRVAIWLA  167



Lambda      K        H        a         alpha
   0.316    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00010309

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460817 pfam03126, Plus-3, Plus-3 domain. This domain is about...  86.1    2e-21


>CDD:460817 pfam03126, Plus-3, Plus-3 domain.  This domain is about 90 residues 
in length and is often found associated with the pfam02213 
domain. The function of this domain is uncertain. It is 
possible that this domain is involved in DNA binding as it 
has three conserved positively charged residues, hence this 
domain has been named the plus-3 domain. It is found in yeast 
Rtf1 which may be a transcription elongation factor.
Length=103

 Score = 86.1 bits (214),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 30/77 (39%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query  271  IQRARVGRTNFAQVCFYPGFDEAISGCYARVNIGPNRDTGINEYRLCLIKSMSPGC----  326
            I R R+ R+   + CFYP F++A+ GC+ RVNIGP+R+TG   YRL  I  +        
Sbjct  1    INRIRLSRSLLEKWCFYPFFEDAVVGCFVRVNIGPDRETGQPVYRLAQIVGVKESGKPYK  60

Query  327  LDSNCTTYRTLLLTHPR  343
            L    TT + L++ H +
Sbjct  61   LGKK-TTNKYLVVRHGK  76



Lambda      K        H        a         alpha
   0.309    0.127    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00017074

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460817 pfam03126, Plus-3, Plus-3 domain. This domain is about...  151     9e-45


>CDD:460817 pfam03126, Plus-3, Plus-3 domain.  This domain is about 90 residues 
in length and is often found associated with the pfam02213 
domain. The function of this domain is uncertain. It is 
possible that this domain is involved in DNA binding as it 
has three conserved positively charged residues, hence this 
domain has been named the plus-3 domain. It is found in yeast 
Rtf1 which may be a transcription elongation factor.
Length=103

 Score = 151 bits (383),  Expect = 9e-45, Method: Composition-based stats.
 Identities = 53/108 (49%), Positives = 69/108 (64%), Gaps = 6/108 (6%)

Query  271  IQRARVGRTNFAQVCFYPGFDEAISGCYARVNIGPNRDTGINEYRLCLIKRFTE-GRPYA  329
            I R R+ R+   + CFYP F++A+ GC+ RVNIGP+R+TG   YRL  I    E G+PY 
Sbjct  1    INRIRLSRSLLEKWCFYPFFEDAVVGCFVRVNIGPDRETGQPVYRLAQIVGVKESGKPYK  60

Query  330  MESPNGRSFVTNQYAVLAHGKAEREFPFIACSDSPFTEAEFNRYRQTM  377
            +         TN+Y V+ HGKAER FP    S+SPFTE EF R+RQT+
Sbjct  61   LG-----KKTTNKYLVVRHGKAERVFPMDFVSNSPFTEEEFERWRQTL  103



Lambda      K        H        a         alpha
   0.309    0.126    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0725    0.140     1.90     42.6     43.6 

Effective search space used: 654076512


Query= TCONS_00017075

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460817 pfam03126, Plus-3, Plus-3 domain. This domain is about...  84.5    3e-21


>CDD:460817 pfam03126, Plus-3, Plus-3 domain.  This domain is about 90 residues 
in length and is often found associated with the pfam02213 
domain. The function of this domain is uncertain. It is 
possible that this domain is involved in DNA binding as it 
has three conserved positively charged residues, hence this 
domain has been named the plus-3 domain. It is found in yeast 
Rtf1 which may be a transcription elongation factor.
Length=103

 Score = 84.5 bits (210),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 30/77 (39%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query  188  IQRARVGRTNFAQVCFYPGFDEAISGCYARVNIGPNRDTGINEYRLCLIKSMSPGC----  243
            I R R+ R+   + CFYP F++A+ GC+ RVNIGP+R+TG   YRL  I  +        
Sbjct  1    INRIRLSRSLLEKWCFYPFFEDAVVGCFVRVNIGPDRETGQPVYRLAQIVGVKESGKPYK  60

Query  244  LDSNCTTYRTLLLTHPR  260
            L    TT + L++ H +
Sbjct  61   LGKK-TTNKYLVVRHGK  76



Lambda      K        H        a         alpha
   0.314    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00017076

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460817 pfam03126, Plus-3, Plus-3 domain. This domain is about...  143     1e-42


>CDD:460817 pfam03126, Plus-3, Plus-3 domain.  This domain is about 90 residues 
in length and is often found associated with the pfam02213 
domain. The function of this domain is uncertain. It is 
possible that this domain is involved in DNA binding as it 
has three conserved positively charged residues, hence this 
domain has been named the plus-3 domain. It is found in yeast 
Rtf1 which may be a transcription elongation factor.
Length=103

 Score = 143 bits (362),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 52/108 (48%), Positives = 68/108 (63%), Gaps = 6/108 (6%)

Query  271  IQRARVGRTNFAQVCFYPGFDEAISGCYARVNIGPNRDTGINEYRLCLIKRFTE-GRPYA  329
            I R R+ R+   + CFYP F++A+ GC+ RVNIGP+R+TG   YRL  I    E G+PY 
Sbjct  1    INRIRLSRSLLEKWCFYPFFEDAVVGCFVRVNIGPDRETGQPVYRLAQIVGVKESGKPYK  60

Query  330  MESPNGRSFVTNQYAVLAHGKAEREFPFIACSDSPFTEVTFNRYRQTM  377
            +         TN+Y V+ HGKAER FP    S+SPFTE  F R+RQT+
Sbjct  61   LG-----KKTTNKYLVVRHGKAERVFPMDFVSNSPFTEEEFERWRQTL  103



Lambda      K        H        a         alpha
   0.309    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00017077

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460817 pfam03126, Plus-3, Plus-3 domain. This domain is about...  150     1e-44


>CDD:460817 pfam03126, Plus-3, Plus-3 domain.  This domain is about 90 residues 
in length and is often found associated with the pfam02213 
domain. The function of this domain is uncertain. It is 
possible that this domain is involved in DNA binding as it 
has three conserved positively charged residues, hence this 
domain has been named the plus-3 domain. It is found in yeast 
Rtf1 which may be a transcription elongation factor.
Length=103

 Score = 150 bits (382),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 53/108 (49%), Positives = 69/108 (64%), Gaps = 6/108 (6%)

Query  188  IQRARVGRTNFAQVCFYPGFDEAISGCYARVNIGPNRDTGINEYRLCLIKRFTE-GRPYA  246
            I R R+ R+   + CFYP F++A+ GC+ RVNIGP+R+TG   YRL  I    E G+PY 
Sbjct  1    INRIRLSRSLLEKWCFYPFFEDAVVGCFVRVNIGPDRETGQPVYRLAQIVGVKESGKPYK  60

Query  247  MESPNGRSFVTNQYAVLAHGKAEREFPFIACSDSPFTEAEFNRYRQTM  294
            +         TN+Y V+ HGKAER FP    S+SPFTE EF R+RQT+
Sbjct  61   LG-----KKTTNKYLVVRHGKAERVFPMDFVSNSPFTEEEFERWRQTL  103



Lambda      K        H        a         alpha
   0.311    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00010310

Length=944
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430616 pfam09444, MRC1, MRC1-like domain. This putative domai...  81.5    1e-18


>CDD:430616 pfam09444, MRC1, MRC1-like domain.  This putative domain is found 
to be the most conserved region in mediator of replication 
checkpoint protein 1.
Length=141

 Score = 81.5 bits (202),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 39/61 (64%), Positives = 46/61 (75%), Gaps = 1/61 (2%)

Query  872  KTSKAKEMVEDAAEESDDEYAGLGGASDE-SEDEEDAYDRQMINDNSGETVDEKQLAALN  930
            K S A E VE+ AEES+DEYAGLGGA DE S+DEED+   +MI+D S E VDE +LAAL 
Sbjct  1    KKSGASEFVEEEAEESEDEYAGLGGADDEDSDDEEDSELEEMIDDESDEDVDEDELAALK  60

Query  931  A  931
            A
Sbjct  61   A  61



Lambda      K        H        a         alpha
   0.304    0.122    0.323    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1200662848


Query= TCONS_00010311

Length=664
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395606 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E a...  351     3e-117
CDD:427609 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E...  134     4e-37 


>CDD:395606 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q), 
catalytic domain.  Other tRNA synthetase sub-families are too 
dissimilar to be included. This family includes only glutamyl 
and glutaminyl tRNA synthetases. In some organisms, a single 
glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and 
tRNA(Gln).
Length=314

 Score = 351 bits (902),  Expect = 3e-117, Method: Composition-based stats.
 Identities = 132/320 (41%), Positives = 173/320 (54%), Gaps = 11/320 (3%)

Query  110  KIRTRFPPEPNGFLHIGHSKAIAVNFGFAKYHGGECILRFDDTNPEGEEEIYYRGIEDIV  169
            K+RTRF P P G+LHIGH+KA   N+ +AK H G+ ILRF+DT+PE E   +   I + +
Sbjct  1    KVRTRFAPSPTGYLHIGHAKAALFNYLYAKNHNGKFILRFEDTDPERETPEFEESILEDL  60

Query  170  SWLGYKPV-RVTNASDNFDRLYELAKELIRRDGAYVCHCTKAEIKAQRGEADGARGKARY  228
             WLG K        SD FD  Y+ A+ELI++  AYVC CT  E++ +R E      +   
Sbjct  61   KWLGIKWDYGPYYQSDRFDIYYKYAEELIKKGKAYVCFCTPEELEEEREE------QEAL  114

Query  229  ACPHRSRPIEESLQEF-EAMKEGKYKAGEAALRMKMDLDDPNPQMWDIFAWRILDVDQKG  287
              P R R  EE+L  F E MK+G  + G A +R K+ ++ P     D    RI    Q+ 
Sbjct  115  GSPSRDRYDEENLHLFEEEMKKGSAEGGPATVRAKIPMESP-YVFRDPVRGRIKFTPQEI  173

Query  288  HFRTGGQWKMYPTYDFAHPLCDSIEEITHSLCTVEFEMSRQSYEWLNDKLDVYRP-MQRE  346
            H RTG +W  YPTYDFA  + D +  ITH L T EF  +   Y W+ D L    P    E
Sbjct  174  HDRTGVKWDGYPTYDFAVVIDDHLMGITHVLRTEEFLDNTPKYIWIYDALGWEPPPFIHE  233

Query  347  YGRLNLTGTVLSKRKIIELVKKGYVRGWDDPRLYTLIAIRRRGIPPGAILSFVNNLGVTK  406
            Y RLNL GT LSKRK+   V    V+GW DPR  TL  +RRRG  P  I  F    GV K
Sbjct  234  YLRLNLDGTKLSKRKLSWSVDISQVKGWGDPREATLNGLRRRGWTPEGIREFFTREGVIK  293

Query  407  ATAI-VQTAKLDQIVRQYLE  425
            +  +   +  L+   R+ L+
Sbjct  294  SFDVNRLSKSLEAFDRKKLD  313


>CDD:427609 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E and Q), 
anti-codon binding domain.  Other tRNA synthetase sub-families 
are too dissimilar to be included. This family includes 
only glutamyl and glutaminyl tRNA synthetases. In some organisms, 
a single glutamyl-tRNA synthetase aminoacylates both 
tRNA(Glu) and tRNA(Gln).
Length=175

 Score = 134 bits (340),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 75/214 (35%), Positives = 100/214 (47%), Gaps = 41/214 (19%)

Query  429  PRLMVVLEPLKVVISNLPDGYEEMVEVPFS-KDPAFGSHLVPFTKNVYIERSDFREEDSP  487
            PR M VL+P+KVVI N P+G EE  EVP   K+P  G+  VPF++ +YIER DF      
Sbjct  2    PRYMAVLDPVKVVIENYPEGQEETAEVPNHPKNPELGTRKVPFSREIYIEREDF------  55

Query  488  DYFRLAPGKTVGLLKVPFPITATAFDKDPQTGAVTCVYAHYEKPEEGSDGPAKKAKTYIH  547
               RLAPG+ V  L   + I  T   KD   G VT ++  Y+  ++       K K  IH
Sbjct  56   --KRLAPGEEVR-LMDAYNIKVTEVVKDE-DGNVTELHCTYD-GDDLGGARKVKGKI-IH  109

Query  548  WVGESAAHKSPVKAEVRAFNSLFKSNDPSAHPDGFLADINPDSEEIYEGAYIDIGFHDVS  607
            WV  SA+    V AEVR ++ LFK  D       FL  +NPDS ++      +    ++ 
Sbjct  110  WV--SASD--AVPAEVRLYDRLFKDED----DADFL--LNPDSLKVLTEGLAEPALANLK  159

Query  608  KSAPWPKTSGETGGEVNPYSIRFQGMRTAYFCVD  641
                     G+            Q  R  YF VD
Sbjct  160  P--------GD----------IVQFERIGYFRVD  175



Lambda      K        H        a         alpha
   0.316    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 842105090


Query= TCONS_00010312

Length=664
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395606 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E a...  351     3e-117
CDD:427609 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E...  134     4e-37 


>CDD:395606 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q), 
catalytic domain.  Other tRNA synthetase sub-families are too 
dissimilar to be included. This family includes only glutamyl 
and glutaminyl tRNA synthetases. In some organisms, a single 
glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and 
tRNA(Gln).
Length=314

 Score = 351 bits (902),  Expect = 3e-117, Method: Composition-based stats.
 Identities = 132/320 (41%), Positives = 173/320 (54%), Gaps = 11/320 (3%)

Query  110  KIRTRFPPEPNGFLHIGHSKAIAVNFGFAKYHGGECILRFDDTNPEGEEEIYYRGIEDIV  169
            K+RTRF P P G+LHIGH+KA   N+ +AK H G+ ILRF+DT+PE E   +   I + +
Sbjct  1    KVRTRFAPSPTGYLHIGHAKAALFNYLYAKNHNGKFILRFEDTDPERETPEFEESILEDL  60

Query  170  SWLGYKPV-RVTNASDNFDRLYELAKELIRRDGAYVCHCTKAEIKAQRGEADGARGKARY  228
             WLG K        SD FD  Y+ A+ELI++  AYVC CT  E++ +R E      +   
Sbjct  61   KWLGIKWDYGPYYQSDRFDIYYKYAEELIKKGKAYVCFCTPEELEEEREE------QEAL  114

Query  229  ACPHRSRPIEESLQEF-EAMKEGKYKAGEAALRMKMDLDDPNPQMWDIFAWRILDVDQKG  287
              P R R  EE+L  F E MK+G  + G A +R K+ ++ P     D    RI    Q+ 
Sbjct  115  GSPSRDRYDEENLHLFEEEMKKGSAEGGPATVRAKIPMESP-YVFRDPVRGRIKFTPQEI  173

Query  288  HFRTGGQWKMYPTYDFAHPLCDSIEEITHSLCTVEFEMSRQSYEWLNDKLDVYRP-MQRE  346
            H RTG +W  YPTYDFA  + D +  ITH L T EF  +   Y W+ D L    P    E
Sbjct  174  HDRTGVKWDGYPTYDFAVVIDDHLMGITHVLRTEEFLDNTPKYIWIYDALGWEPPPFIHE  233

Query  347  YGRLNLTGTVLSKRKIIELVKKGYVRGWDDPRLYTLIAIRRRGIPPGAILSFVNNLGVTK  406
            Y RLNL GT LSKRK+   V    V+GW DPR  TL  +RRRG  P  I  F    GV K
Sbjct  234  YLRLNLDGTKLSKRKLSWSVDISQVKGWGDPREATLNGLRRRGWTPEGIREFFTREGVIK  293

Query  407  ATAI-VQTAKLDQIVRQYLE  425
            +  +   +  L+   R+ L+
Sbjct  294  SFDVNRLSKSLEAFDRKKLD  313


>CDD:427609 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E and Q), 
anti-codon binding domain.  Other tRNA synthetase sub-families 
are too dissimilar to be included. This family includes 
only glutamyl and glutaminyl tRNA synthetases. In some organisms, 
a single glutamyl-tRNA synthetase aminoacylates both 
tRNA(Glu) and tRNA(Gln).
Length=175

 Score = 134 bits (340),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 75/214 (35%), Positives = 100/214 (47%), Gaps = 41/214 (19%)

Query  429  PRLMVVLEPLKVVISNLPDGYEEMVEVPFS-KDPAFGSHLVPFTKNVYIERSDFREEDSP  487
            PR M VL+P+KVVI N P+G EE  EVP   K+P  G+  VPF++ +YIER DF      
Sbjct  2    PRYMAVLDPVKVVIENYPEGQEETAEVPNHPKNPELGTRKVPFSREIYIEREDF------  55

Query  488  DYFRLAPGKTVGLLKVPFPITATAFDKDPQTGAVTCVYAHYEKPEEGSDGPAKKAKTYIH  547
               RLAPG+ V  L   + I  T   KD   G VT ++  Y+  ++       K K  IH
Sbjct  56   --KRLAPGEEVR-LMDAYNIKVTEVVKDE-DGNVTELHCTYD-GDDLGGARKVKGKI-IH  109

Query  548  WVGESAAHKSPVKAEVRAFNSLFKSNDPSAHPDGFLADINPDSEEIYEGAYIDIGFHDVS  607
            WV  SA+    V AEVR ++ LFK  D       FL  +NPDS ++      +    ++ 
Sbjct  110  WV--SASD--AVPAEVRLYDRLFKDED----DADFL--LNPDSLKVLTEGLAEPALANLK  159

Query  608  KSAPWPKTSGETGGEVNPYSIRFQGMRTAYFCVD  641
                     G+            Q  R  YF VD
Sbjct  160  P--------GD----------IVQFERIGYFRVD  175



Lambda      K        H        a         alpha
   0.316    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 842105090


Query= TCONS_00010313

Length=1284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430616 pfam09444, MRC1, MRC1-like domain. This putative domai...  165     1e-47


>CDD:430616 pfam09444, MRC1, MRC1-like domain.  This putative domain is found 
to be the most conserved region in mediator of replication 
checkpoint protein 1.
Length=141

 Score = 165 bits (419),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 88/141 (62%), Positives = 105/141 (74%), Gaps = 1/141 (1%)

Query  872   KTSKAKEMVEDAAEESDDEYAGLGGASDE-SEDEEDAYDRQMINDNSGETVDEKQLAALN  930
             K S A E VE+ AEES+DEYAGLGGA DE S+DEED+   +MI+D S E VDE +LAAL 
Sbjct  1     KKSGASEFVEEEAEESEDEYAGLGGADDEDSDDEEDSELEEMIDDESDEDVDEDELAALK  60

Query  931   ALHQRNADEKQVAKLLKDITTGALRRRRHADDEFDLDDSDDELLARRRQKQREFARMRKA  990
             A  +R  DEK+V KLLKDITTG LRRRR    + DL DSDDE    RR+K+R FA+MRKA
Sbjct  61    AKEEREEDEKEVEKLLKDITTGGLRRRRRGGLDLDLSDSDDEDAELRRRKRRRFAKMRKA  120

Query  991   LLADEKIGEIAENPKKAAFFK  1011
             LLADE + ++A+NPK  AFFK
Sbjct  121   LLADENLEKLAKNPKTKAFFK  141



Lambda      K        H        a         alpha
   0.305    0.123    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1632647600


Query= TCONS_00010315

Length=664
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395606 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E a...  351     3e-117
CDD:427609 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E...  134     4e-37 


>CDD:395606 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q), 
catalytic domain.  Other tRNA synthetase sub-families are too 
dissimilar to be included. This family includes only glutamyl 
and glutaminyl tRNA synthetases. In some organisms, a single 
glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and 
tRNA(Gln).
Length=314

 Score = 351 bits (902),  Expect = 3e-117, Method: Composition-based stats.
 Identities = 132/320 (41%), Positives = 173/320 (54%), Gaps = 11/320 (3%)

Query  110  KIRTRFPPEPNGFLHIGHSKAIAVNFGFAKYHGGECILRFDDTNPEGEEEIYYRGIEDIV  169
            K+RTRF P P G+LHIGH+KA   N+ +AK H G+ ILRF+DT+PE E   +   I + +
Sbjct  1    KVRTRFAPSPTGYLHIGHAKAALFNYLYAKNHNGKFILRFEDTDPERETPEFEESILEDL  60

Query  170  SWLGYKPV-RVTNASDNFDRLYELAKELIRRDGAYVCHCTKAEIKAQRGEADGARGKARY  228
             WLG K        SD FD  Y+ A+ELI++  AYVC CT  E++ +R E      +   
Sbjct  61   KWLGIKWDYGPYYQSDRFDIYYKYAEELIKKGKAYVCFCTPEELEEEREE------QEAL  114

Query  229  ACPHRSRPIEESLQEF-EAMKEGKYKAGEAALRMKMDLDDPNPQMWDIFAWRILDVDQKG  287
              P R R  EE+L  F E MK+G  + G A +R K+ ++ P     D    RI    Q+ 
Sbjct  115  GSPSRDRYDEENLHLFEEEMKKGSAEGGPATVRAKIPMESP-YVFRDPVRGRIKFTPQEI  173

Query  288  HFRTGGQWKMYPTYDFAHPLCDSIEEITHSLCTVEFEMSRQSYEWLNDKLDVYRP-MQRE  346
            H RTG +W  YPTYDFA  + D +  ITH L T EF  +   Y W+ D L    P    E
Sbjct  174  HDRTGVKWDGYPTYDFAVVIDDHLMGITHVLRTEEFLDNTPKYIWIYDALGWEPPPFIHE  233

Query  347  YGRLNLTGTVLSKRKIIELVKKGYVRGWDDPRLYTLIAIRRRGIPPGAILSFVNNLGVTK  406
            Y RLNL GT LSKRK+   V    V+GW DPR  TL  +RRRG  P  I  F    GV K
Sbjct  234  YLRLNLDGTKLSKRKLSWSVDISQVKGWGDPREATLNGLRRRGWTPEGIREFFTREGVIK  293

Query  407  ATAI-VQTAKLDQIVRQYLE  425
            +  +   +  L+   R+ L+
Sbjct  294  SFDVNRLSKSLEAFDRKKLD  313


>CDD:427609 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E and Q), 
anti-codon binding domain.  Other tRNA synthetase sub-families 
are too dissimilar to be included. This family includes 
only glutamyl and glutaminyl tRNA synthetases. In some organisms, 
a single glutamyl-tRNA synthetase aminoacylates both 
tRNA(Glu) and tRNA(Gln).
Length=175

 Score = 134 bits (340),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 75/214 (35%), Positives = 100/214 (47%), Gaps = 41/214 (19%)

Query  429  PRLMVVLEPLKVVISNLPDGYEEMVEVPFS-KDPAFGSHLVPFTKNVYIERSDFREEDSP  487
            PR M VL+P+KVVI N P+G EE  EVP   K+P  G+  VPF++ +YIER DF      
Sbjct  2    PRYMAVLDPVKVVIENYPEGQEETAEVPNHPKNPELGTRKVPFSREIYIEREDF------  55

Query  488  DYFRLAPGKTVGLLKVPFPITATAFDKDPQTGAVTCVYAHYEKPEEGSDGPAKKAKTYIH  547
               RLAPG+ V  L   + I  T   KD   G VT ++  Y+  ++       K K  IH
Sbjct  56   --KRLAPGEEVR-LMDAYNIKVTEVVKDE-DGNVTELHCTYD-GDDLGGARKVKGKI-IH  109

Query  548  WVGESAAHKSPVKAEVRAFNSLFKSNDPSAHPDGFLADINPDSEEIYEGAYIDIGFHDVS  607
            WV  SA+    V AEVR ++ LFK  D       FL  +NPDS ++      +    ++ 
Sbjct  110  WV--SASD--AVPAEVRLYDRLFKDED----DADFL--LNPDSLKVLTEGLAEPALANLK  159

Query  608  KSAPWPKTSGETGGEVNPYSIRFQGMRTAYFCVD  641
                     G+            Q  R  YF VD
Sbjct  160  P--------GD----------IVQFERIGYFRVD  175



Lambda      K        H        a         alpha
   0.316    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 842105090


Query= TCONS_00010314

Length=664
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395606 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E a...  351     3e-117
CDD:427609 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E...  134     4e-37 


>CDD:395606 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q), 
catalytic domain.  Other tRNA synthetase sub-families are too 
dissimilar to be included. This family includes only glutamyl 
and glutaminyl tRNA synthetases. In some organisms, a single 
glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and 
tRNA(Gln).
Length=314

 Score = 351 bits (902),  Expect = 3e-117, Method: Composition-based stats.
 Identities = 132/320 (41%), Positives = 173/320 (54%), Gaps = 11/320 (3%)

Query  110  KIRTRFPPEPNGFLHIGHSKAIAVNFGFAKYHGGECILRFDDTNPEGEEEIYYRGIEDIV  169
            K+RTRF P P G+LHIGH+KA   N+ +AK H G+ ILRF+DT+PE E   +   I + +
Sbjct  1    KVRTRFAPSPTGYLHIGHAKAALFNYLYAKNHNGKFILRFEDTDPERETPEFEESILEDL  60

Query  170  SWLGYKPV-RVTNASDNFDRLYELAKELIRRDGAYVCHCTKAEIKAQRGEADGARGKARY  228
             WLG K        SD FD  Y+ A+ELI++  AYVC CT  E++ +R E      +   
Sbjct  61   KWLGIKWDYGPYYQSDRFDIYYKYAEELIKKGKAYVCFCTPEELEEEREE------QEAL  114

Query  229  ACPHRSRPIEESLQEF-EAMKEGKYKAGEAALRMKMDLDDPNPQMWDIFAWRILDVDQKG  287
              P R R  EE+L  F E MK+G  + G A +R K+ ++ P     D    RI    Q+ 
Sbjct  115  GSPSRDRYDEENLHLFEEEMKKGSAEGGPATVRAKIPMESP-YVFRDPVRGRIKFTPQEI  173

Query  288  HFRTGGQWKMYPTYDFAHPLCDSIEEITHSLCTVEFEMSRQSYEWLNDKLDVYRP-MQRE  346
            H RTG +W  YPTYDFA  + D +  ITH L T EF  +   Y W+ D L    P    E
Sbjct  174  HDRTGVKWDGYPTYDFAVVIDDHLMGITHVLRTEEFLDNTPKYIWIYDALGWEPPPFIHE  233

Query  347  YGRLNLTGTVLSKRKIIELVKKGYVRGWDDPRLYTLIAIRRRGIPPGAILSFVNNLGVTK  406
            Y RLNL GT LSKRK+   V    V+GW DPR  TL  +RRRG  P  I  F    GV K
Sbjct  234  YLRLNLDGTKLSKRKLSWSVDISQVKGWGDPREATLNGLRRRGWTPEGIREFFTREGVIK  293

Query  407  ATAI-VQTAKLDQIVRQYLE  425
            +  +   +  L+   R+ L+
Sbjct  294  SFDVNRLSKSLEAFDRKKLD  313


>CDD:427609 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E and Q), 
anti-codon binding domain.  Other tRNA synthetase sub-families 
are too dissimilar to be included. This family includes 
only glutamyl and glutaminyl tRNA synthetases. In some organisms, 
a single glutamyl-tRNA synthetase aminoacylates both 
tRNA(Glu) and tRNA(Gln).
Length=175

 Score = 134 bits (340),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 75/214 (35%), Positives = 100/214 (47%), Gaps = 41/214 (19%)

Query  429  PRLMVVLEPLKVVISNLPDGYEEMVEVPFS-KDPAFGSHLVPFTKNVYIERSDFREEDSP  487
            PR M VL+P+KVVI N P+G EE  EVP   K+P  G+  VPF++ +YIER DF      
Sbjct  2    PRYMAVLDPVKVVIENYPEGQEETAEVPNHPKNPELGTRKVPFSREIYIEREDF------  55

Query  488  DYFRLAPGKTVGLLKVPFPITATAFDKDPQTGAVTCVYAHYEKPEEGSDGPAKKAKTYIH  547
               RLAPG+ V  L   + I  T   KD   G VT ++  Y+  ++       K K  IH
Sbjct  56   --KRLAPGEEVR-LMDAYNIKVTEVVKDE-DGNVTELHCTYD-GDDLGGARKVKGKI-IH  109

Query  548  WVGESAAHKSPVKAEVRAFNSLFKSNDPSAHPDGFLADINPDSEEIYEGAYIDIGFHDVS  607
            WV  SA+    V AEVR ++ LFK  D       FL  +NPDS ++      +    ++ 
Sbjct  110  WV--SASD--AVPAEVRLYDRLFKDED----DADFL--LNPDSLKVLTEGLAEPALANLK  159

Query  608  KSAPWPKTSGETGGEVNPYSIRFQGMRTAYFCVD  641
                     G+            Q  R  YF VD
Sbjct  160  P--------GD----------IVQFERIGYFRVD  175



Lambda      K        H        a         alpha
   0.316    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 842105090


Query= TCONS_00010316

Length=664
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395606 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E a...  351     3e-117
CDD:427609 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E...  134     4e-37 


>CDD:395606 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q), 
catalytic domain.  Other tRNA synthetase sub-families are too 
dissimilar to be included. This family includes only glutamyl 
and glutaminyl tRNA synthetases. In some organisms, a single 
glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and 
tRNA(Gln).
Length=314

 Score = 351 bits (902),  Expect = 3e-117, Method: Composition-based stats.
 Identities = 132/320 (41%), Positives = 173/320 (54%), Gaps = 11/320 (3%)

Query  110  KIRTRFPPEPNGFLHIGHSKAIAVNFGFAKYHGGECILRFDDTNPEGEEEIYYRGIEDIV  169
            K+RTRF P P G+LHIGH+KA   N+ +AK H G+ ILRF+DT+PE E   +   I + +
Sbjct  1    KVRTRFAPSPTGYLHIGHAKAALFNYLYAKNHNGKFILRFEDTDPERETPEFEESILEDL  60

Query  170  SWLGYKPV-RVTNASDNFDRLYELAKELIRRDGAYVCHCTKAEIKAQRGEADGARGKARY  228
             WLG K        SD FD  Y+ A+ELI++  AYVC CT  E++ +R E      +   
Sbjct  61   KWLGIKWDYGPYYQSDRFDIYYKYAEELIKKGKAYVCFCTPEELEEEREE------QEAL  114

Query  229  ACPHRSRPIEESLQEF-EAMKEGKYKAGEAALRMKMDLDDPNPQMWDIFAWRILDVDQKG  287
              P R R  EE+L  F E MK+G  + G A +R K+ ++ P     D    RI    Q+ 
Sbjct  115  GSPSRDRYDEENLHLFEEEMKKGSAEGGPATVRAKIPMESP-YVFRDPVRGRIKFTPQEI  173

Query  288  HFRTGGQWKMYPTYDFAHPLCDSIEEITHSLCTVEFEMSRQSYEWLNDKLDVYRP-MQRE  346
            H RTG +W  YPTYDFA  + D +  ITH L T EF  +   Y W+ D L    P    E
Sbjct  174  HDRTGVKWDGYPTYDFAVVIDDHLMGITHVLRTEEFLDNTPKYIWIYDALGWEPPPFIHE  233

Query  347  YGRLNLTGTVLSKRKIIELVKKGYVRGWDDPRLYTLIAIRRRGIPPGAILSFVNNLGVTK  406
            Y RLNL GT LSKRK+   V    V+GW DPR  TL  +RRRG  P  I  F    GV K
Sbjct  234  YLRLNLDGTKLSKRKLSWSVDISQVKGWGDPREATLNGLRRRGWTPEGIREFFTREGVIK  293

Query  407  ATAI-VQTAKLDQIVRQYLE  425
            +  +   +  L+   R+ L+
Sbjct  294  SFDVNRLSKSLEAFDRKKLD  313


>CDD:427609 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E and Q), 
anti-codon binding domain.  Other tRNA synthetase sub-families 
are too dissimilar to be included. This family includes 
only glutamyl and glutaminyl tRNA synthetases. In some organisms, 
a single glutamyl-tRNA synthetase aminoacylates both 
tRNA(Glu) and tRNA(Gln).
Length=175

 Score = 134 bits (340),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 75/214 (35%), Positives = 100/214 (47%), Gaps = 41/214 (19%)

Query  429  PRLMVVLEPLKVVISNLPDGYEEMVEVPFS-KDPAFGSHLVPFTKNVYIERSDFREEDSP  487
            PR M VL+P+KVVI N P+G EE  EVP   K+P  G+  VPF++ +YIER DF      
Sbjct  2    PRYMAVLDPVKVVIENYPEGQEETAEVPNHPKNPELGTRKVPFSREIYIEREDF------  55

Query  488  DYFRLAPGKTVGLLKVPFPITATAFDKDPQTGAVTCVYAHYEKPEEGSDGPAKKAKTYIH  547
               RLAPG+ V  L   + I  T   KD   G VT ++  Y+  ++       K K  IH
Sbjct  56   --KRLAPGEEVR-LMDAYNIKVTEVVKDE-DGNVTELHCTYD-GDDLGGARKVKGKI-IH  109

Query  548  WVGESAAHKSPVKAEVRAFNSLFKSNDPSAHPDGFLADINPDSEEIYEGAYIDIGFHDVS  607
            WV  SA+    V AEVR ++ LFK  D       FL  +NPDS ++      +    ++ 
Sbjct  110  WV--SASD--AVPAEVRLYDRLFKDED----DADFL--LNPDSLKVLTEGLAEPALANLK  159

Query  608  KSAPWPKTSGETGGEVNPYSIRFQGMRTAYFCVD  641
                     G+            Q  R  YF VD
Sbjct  160  P--------GD----------IVQFERIGYFRVD  175



Lambda      K        H        a         alpha
   0.316    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 842105090


Query= TCONS_00017078

Length=382


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00010317

Length=444


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00017079

Length=367


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00010318

Length=470


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00010319

Length=367


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00010320

Length=539
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432685 pfam12634, Inp1, Inheritance of peroxisomes protein 1....  181     1e-55


>CDD:432685 pfam12634, Inp1, Inheritance of peroxisomes protein 1.  Inp1 
is a family of peripheral membrane proteins of peroxisomes. 
Inp1p binds Pex25p, Pex30p, and Vps1p, all of which are involved 
in controlling peroxisome division. The levels of Inp1p 
vary with the cell cycle, and Inp1 acts as a factor that retains 
peroxisomes in cells and controls peroxisome division. 
Inp1p promotes the retention of peroxisomes in mother cells 
and buds of budding yeast by attaching peroxisomes to as-yet-unidentified 
cortical structures.
Length=137

 Score = 181 bits (462),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 74/133 (56%), Positives = 91/133 (68%), Gaps = 4/133 (3%)

Query  45   LLFHPSAKIVHFSP--RALAPIPSSTAPADFDYPVDTIETLPWRSATERTVACAPLRLEK  102
            L  HP+ KIV F+P   + +   SS   +D DYP  +IETLPWRS TERT+A  PL + +
Sbjct  5    LFKHPNVKIVSFTPPGSSSSSSSSSPTSSDVDYPSGSIETLPWRSKTERTIAVGPLEIYR  64

Query  103  VHGLTVFLKCGSVVHAILKNSQCWCV-DGESTFVLRI-RPLTYYRIELPNETEEDKKLVV  160
            + G   FL CG++VH IL  SQCWCV DGES FVLRI RP  Y+RIE P ETEEDK+ V 
Sbjct  65   IPGSVAFLSCGNIVHPILPKSQCWCVDDGESKFVLRIRRPERYWRIEFPVETEEDKEKVE  124

Query  161  AMKEALSKVLRYE  173
              KE LSK+L++E
Sbjct  125  EFKEVLSKILQFE  137



Lambda      K        H        a         alpha
   0.312    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 678301568


Query= TCONS_00017080

Length=539
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432685 pfam12634, Inp1, Inheritance of peroxisomes protein 1....  181     1e-55


>CDD:432685 pfam12634, Inp1, Inheritance of peroxisomes protein 1.  Inp1 
is a family of peripheral membrane proteins of peroxisomes. 
Inp1p binds Pex25p, Pex30p, and Vps1p, all of which are involved 
in controlling peroxisome division. The levels of Inp1p 
vary with the cell cycle, and Inp1 acts as a factor that retains 
peroxisomes in cells and controls peroxisome division. 
Inp1p promotes the retention of peroxisomes in mother cells 
and buds of budding yeast by attaching peroxisomes to as-yet-unidentified 
cortical structures.
Length=137

 Score = 181 bits (462),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 74/133 (56%), Positives = 91/133 (68%), Gaps = 4/133 (3%)

Query  45   LLFHPSAKIVHFSP--RALAPIPSSTAPADFDYPVDTIETLPWRSATERTVACAPLRLEK  102
            L  HP+ KIV F+P   + +   SS   +D DYP  +IETLPWRS TERT+A  PL + +
Sbjct  5    LFKHPNVKIVSFTPPGSSSSSSSSSPTSSDVDYPSGSIETLPWRSKTERTIAVGPLEIYR  64

Query  103  VHGLTVFLKCGSVVHAILKNSQCWCV-DGESTFVLRI-RPLTYYRIELPNETEEDKKLVV  160
            + G   FL CG++VH IL  SQCWCV DGES FVLRI RP  Y+RIE P ETEEDK+ V 
Sbjct  65   IPGSVAFLSCGNIVHPILPKSQCWCVDDGESKFVLRIRRPERYWRIEFPVETEEDKEKVE  124

Query  161  AMKEALSKVLRYE  173
              KE LSK+L++E
Sbjct  125  EFKEVLSKILQFE  137



Lambda      K        H        a         alpha
   0.312    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 678301568


Query= TCONS_00010326

Length=246


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00017081

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00010322

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00010323

Length=366


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00010324

Length=246


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00017082

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00017083

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. ...  531     0.0  


>CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family.  This family 
includes amidohydrolases of formamide EC:3.5.1.49 and 
acetamide. Methylophilus methylotrophus FmdA forms a homotrimer 
suggesting all the members of this family also do.
Length=271

 Score = 531 bits (1370),  Expect = 0.0, Method: Composition-based stats.
 Identities = 192/314 (61%), Positives = 226/314 (72%), Gaps = 43/314 (14%)

Query  66   KNVDLTQIHYLSGPFEIETAEPGDVLLVEIQDVQPFEDQPWGFTGIFSRHNGGGFLDEIY  125
            ++VDLT +HYLSGP  +E AEPGD+L+V+I D+ P  + PWG+TGIF++ NGGGFL + +
Sbjct  1    RDVDLTGVHYLSGPVAVEGAEPGDLLVVDILDIGPLPEAPWGYTGIFAKENGGGFLTDHF  60

Query  126  PEPAKAIWDFEGIFCSSRHIPHVRFAGLIHPGILGCAPSAEVLAEWNRREGELIATNTRG  185
            PE AKAIWDFEGI+ +SRHIP VRF GL HPG++G APSAE+L  WN REGELIAT    
Sbjct  61   PEAAKAIWDFEGIYATSRHIPGVRFRGLPHPGLIGTAPSAELLDSWNAREGELIAT----  116

Query  186  RDVAKPPEPKNVHAGSADEDLKAKIGREGARTIPGRPEHGGNCDIKNLSRGSKVYLPVHV  245
                                                 E+GGNCDIKNLSRGS+VY PV V
Sbjct  117  -------------------------------------ENGGNCDIKNLSRGSRVYFPVFV  139

Query  246  PGAKFSVGDLHFSQGDGEISFCGAIEMAGVITLKFTVIKDGMAKMGMKSPIFHPGPVEPQ  305
             GA  SVGDLHFSQGDGEI+FCGAIEMAGV+TLK  VIK GMAK G+K+PIF PGPVEP+
Sbjct  140  EGAGLSVGDLHFSQGDGEITFCGAIEMAGVVTLKVDVIKGGMAKYGIKNPIFLPGPVEPR  199

Query  306  FGPGRYLTFEGFSVDEHGKQHYLDATVAYRQTCLRVIEYLRRYGYNDYQIYLLLSCAPVQ  365
            +    YL+FEG SVDE GKQHYLDATVAYR  CLR IEYL+++GY   Q YLLLS APV+
Sbjct  200  Y--SEYLSFEGISVDESGKQHYLDATVAYRNACLRAIEYLKKFGYTGEQAYLLLSVAPVE  257

Query  366  GHIAGLVDIPNACT  379
            G I+G+VDIPNAC 
Sbjct  258  GRISGIVDIPNACA  271



Lambda      K        H        a         alpha
   0.320    0.141    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00010325

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00010327

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00010328

Length=366


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00010329

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00010331

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. ...  532     0.0  


>CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family.  This family 
includes amidohydrolases of formamide EC:3.5.1.49 and 
acetamide. Methylophilus methylotrophus FmdA forms a homotrimer 
suggesting all the members of this family also do.
Length=271

 Score = 532 bits (1372),  Expect = 0.0, Method: Composition-based stats.
 Identities = 192/314 (61%), Positives = 226/314 (72%), Gaps = 43/314 (14%)

Query  66   KNVDLTQIHYLSGPFEIETAEPGDVLLVEIQDVQPFEDQPWGFTGIFSRHNGGGFLDEIY  125
            ++VDLT +HYLSGP  +E AEPGD+L+V+I D+ P  + PWG+TGIF++ NGGGFL + +
Sbjct  1    RDVDLTGVHYLSGPVAVEGAEPGDLLVVDILDIGPLPEAPWGYTGIFAKENGGGFLTDHF  60

Query  126  PEPAKAIWDFEGIFCSSRHIPHVRFAGLIHPGILGCAPSAEVLAEWNRREGELIATNTRG  185
            PE AKAIWDFEGI+ +SRHIP VRF GL HPG++G APSAE+L  WN REGELIAT    
Sbjct  61   PEAAKAIWDFEGIYATSRHIPGVRFRGLPHPGLIGTAPSAELLDSWNAREGELIAT----  116

Query  186  RDVAKPPEPKNVHAGSADEDLKAKIGREGARTIPGRPEHGGNCDIKNLSRGSKVYLPVHV  245
                                                 E+GGNCDIKNLSRGS+VY PV V
Sbjct  117  -------------------------------------ENGGNCDIKNLSRGSRVYFPVFV  139

Query  246  PGAKFSVGDLHFSQGDGEISFCGAIEMAGVITLKFTVIKDGMAKMGMKSPIFHPGPVEPQ  305
             GA  SVGDLHFSQGDGEI+FCGAIEMAGV+TLK  VIK GMAK G+K+PIF PGPVEP+
Sbjct  140  EGAGLSVGDLHFSQGDGEITFCGAIEMAGVVTLKVDVIKGGMAKYGIKNPIFLPGPVEPR  199

Query  306  FGPGRYLTFEGFSVDEHGKQHYLDATVAYRQTCLRVIEYLRRYGYNDYQIYLLLSCAPVQ  365
            +    YL+FEG SVDE GKQHYLDATVAYR  CLR IEYL+++GY   Q YLLLS APV+
Sbjct  200  Y--SEYLSFEGISVDESGKQHYLDATVAYRNACLRAIEYLKKFGYTGEQAYLLLSVAPVE  257

Query  366  GHIAGLVDIPNACT  379
            G I+G+VDIPNAC 
Sbjct  258  GRISGIVDIPNACA  271



Lambda      K        H        a         alpha
   0.320    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500176124


Query= TCONS_00010330

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. ...  532     0.0  


>CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family.  This family 
includes amidohydrolases of formamide EC:3.5.1.49 and 
acetamide. Methylophilus methylotrophus FmdA forms a homotrimer 
suggesting all the members of this family also do.
Length=271

 Score = 532 bits (1373),  Expect = 0.0, Method: Composition-based stats.
 Identities = 192/314 (61%), Positives = 226/314 (72%), Gaps = 43/314 (14%)

Query  66   KNVDLTQIHYLSGPFEIETAEPGDVLLVEIQDVQPFEDQPWGFTGIFSRHNGGGFLDEIY  125
            ++VDLT +HYLSGP  +E AEPGD+L+V+I D+ P  + PWG+TGIF++ NGGGFL + +
Sbjct  1    RDVDLTGVHYLSGPVAVEGAEPGDLLVVDILDIGPLPEAPWGYTGIFAKENGGGFLTDHF  60

Query  126  PEPAKAIWDFEGIFCSSRHIPHVRFAGLIHPGILGCAPSAEVLAEWNRREGELIATNTRG  185
            PE AKAIWDFEGI+ +SRHIP VRF GL HPG++G APSAE+L  WN REGELIAT    
Sbjct  61   PEAAKAIWDFEGIYATSRHIPGVRFRGLPHPGLIGTAPSAELLDSWNAREGELIAT----  116

Query  186  RDVAKPPEPKNVHAGSADEDLKAKIGREGARTIPGRPEHGGNCDIKNLSRGSKVYLPVHV  245
                                                 E+GGNCDIKNLSRGS+VY PV V
Sbjct  117  -------------------------------------ENGGNCDIKNLSRGSRVYFPVFV  139

Query  246  PGAKFSVGDLHFSQGDGEISFCGAIEMAGVITLKFTVIKDGMAKMGMKSPIFHPGPVEPQ  305
             GA  SVGDLHFSQGDGEI+FCGAIEMAGV+TLK  VIK GMAK G+K+PIF PGPVEP+
Sbjct  140  EGAGLSVGDLHFSQGDGEITFCGAIEMAGVVTLKVDVIKGGMAKYGIKNPIFLPGPVEPR  199

Query  306  FGPGRYLTFEGFSVDEHGKQHYLDATVAYRQTCLRVIEYLRRYGYNDYQIYLLLSCAPVQ  365
            +    YL+FEG SVDE GKQHYLDATVAYR  CLR IEYL+++GY   Q YLLLS APV+
Sbjct  200  Y--SEYLSFEGISVDESGKQHYLDATVAYRNACLRAIEYLKKFGYTGEQAYLLLSVAPVE  257

Query  366  GHIAGLVDIPNACT  379
            G I+G+VDIPNAC 
Sbjct  258  GRISGIVDIPNACA  271



Lambda      K        H        a         alpha
   0.320    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500176124


Query= TCONS_00017084

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. ...  531     0.0  


>CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family.  This family 
includes amidohydrolases of formamide EC:3.5.1.49 and 
acetamide. Methylophilus methylotrophus FmdA forms a homotrimer 
suggesting all the members of this family also do.
Length=271

 Score = 531 bits (1371),  Expect = 0.0, Method: Composition-based stats.
 Identities = 192/314 (61%), Positives = 226/314 (72%), Gaps = 43/314 (14%)

Query  40   KNVDLTQIHYLSGPFEIETAEPGDVLLVEIQDVQPFEDQPWGFTGIFSRHNGGGFLDEIY  99
            ++VDLT +HYLSGP  +E AEPGD+L+V+I D+ P  + PWG+TGIF++ NGGGFL + +
Sbjct  1    RDVDLTGVHYLSGPVAVEGAEPGDLLVVDILDIGPLPEAPWGYTGIFAKENGGGFLTDHF  60

Query  100  PEPAKAIWDFEGIFCSSRHIPHVRFAGLIHPGILGCAPSAEVLAEWNRREGELIATNTRG  159
            PE AKAIWDFEGI+ +SRHIP VRF GL HPG++G APSAE+L  WN REGELIAT    
Sbjct  61   PEAAKAIWDFEGIYATSRHIPGVRFRGLPHPGLIGTAPSAELLDSWNAREGELIAT----  116

Query  160  RDVAKPPEPKNVHAGSADEDLKAKIGREGARTIPGRPEHGGNCDIKNLSRGSKVYLPVHV  219
                                                 E+GGNCDIKNLSRGS+VY PV V
Sbjct  117  -------------------------------------ENGGNCDIKNLSRGSRVYFPVFV  139

Query  220  PGAKFSVGDLHFSQGDGEISFCGAIEMAGVITLKFTVIKDGMAKMGMKSPIFHPGPVEPQ  279
             GA  SVGDLHFSQGDGEI+FCGAIEMAGV+TLK  VIK GMAK G+K+PIF PGPVEP+
Sbjct  140  EGAGLSVGDLHFSQGDGEITFCGAIEMAGVVTLKVDVIKGGMAKYGIKNPIFLPGPVEPR  199

Query  280  FGPGRYLTFEGFSVDEHGKQHYLDATVAYRQTCLRVIEYLRRYGYNDYQIYLLLSCAPVQ  339
            +    YL+FEG SVDE GKQHYLDATVAYR  CLR IEYL+++GY   Q YLLLS APV+
Sbjct  200  Y--SEYLSFEGISVDESGKQHYLDATVAYRNACLRAIEYLKKFGYTGEQAYLLLSVAPVE  257

Query  340  GHIAGLVDIPNACT  353
            G I+G+VDIPNAC 
Sbjct  258  GRISGIVDIPNACA  271



Lambda      K        H        a         alpha
   0.320    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 459789232


Query= TCONS_00010332

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  135     4e-40


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 135 bits (342),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 55/107 (51%), Positives = 67/107 (63%), Gaps = 8/107 (7%)

Query  1    MIQGGDFTNFNGTGGESIYGEKFPDENF--ELKHDRPFLLSMANSG--PGTNGSQFFITT  56
            M+QGGD T   GTGG        PDE F   LKH +   LSMAN+G  P +NGSQFFIT 
Sbjct  47   MVQGGDPT---GTGGGGKSIFPIPDEIFPLLLKH-KRGALSMANTGPAPNSNGSQFFITL  102

Query  57   VPTPHLDGKHVVFGEVINGKSIVRKIENMPTQADKPTTDVTIVDCGE  103
             P PHLDGK+ VFG+V+ G  ++ KIE +PT  D+P   V I+ CG 
Sbjct  103  GPAPHLDGKYTVFGKVVEGMDVLEKIEKVPTDGDRPVKPVKILSCGV  149



Lambda      K        H        a         alpha
   0.311    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00017085

Length=451
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            65.1    4e-12


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 65.1 bits (159),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 0/133 (0%)

Query  5    SALNYLLLGFFNVIWIPTAMKLGRKIVYILSLLFVLGSGIWGRFFEGTAQYYVMLAIGGI  64
              L  L       +    + + GR+ V ++ LL      +   F        V+  + G+
Sbjct  38   LTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL  97

Query  65   GTAAYQALIQLTIFDLFFSHERGSMVAIYIFFQQLGSILGLILGGYITDGIGWRWSQPIV  124
            G  A        I D F   ERG  + +      LG+ LG +LGG +    GWR +  I+
Sbjct  98   GAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLIL  157

Query  125  AIACGILILLFIF  137
            AI   +  +L + 
Sbjct  158  AILSLLAAVLLLL  170



Lambda      K        H        a         alpha
   0.329    0.143    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 553667144


Query= TCONS_00010333

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00010334

Length=620
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461155 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not comp...  361     7e-123
CDD:461199 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family. NOT1, ...  184     2e-56 


>CDD:461155 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not complex component. 
 
Length=228

 Score = 361 bits (928),  Expect = 7e-123, Method: Composition-based stats.
 Identities = 138/230 (60%), Positives = 178/230 (77%), Gaps = 4/230 (2%)

Query  2    TSRKTQQEIDKTFKKVAEGIQTFEGIYEKIRSTSNPTQRDKLEENLKREIKKLQRFRDQI  61
             +RK QQEID+T KKVAEG++ F+ IYEK+ S +N +Q++KLE +LK+EIKKLQR RDQI
Sbjct  1    AARKLQQEIDRTLKKVAEGLEEFDDIYEKLESATNSSQKEKLEADLKKEIKKLQRLRDQI  60

Query  62   KSWASGNEVKDKGPLLEQRRAIETCMEQFKAVEKEMKTKAYSKEGLS--AASRLDPKEKE  119
            K+W S N++KDK  LLE R+ IE  ME+FKAVEKE KTKA+SKEGLS  AAS+LDPKEKE
Sbjct  61   KTWLSSNDIKDKKKLLENRKLIEEAMERFKAVEKESKTKAFSKEGLSLAAASKLDPKEKE  120

Query  120  KLEACDFLSTCVDELQLKIEAMEAEEETLHVQMKKGKKDITKTNRLSDLSRILERHKWHV  179
            K EA D+LS  +DEL  +IEA+EAE E+L  Q KK KKD  K  RL +L +++ERHK+H+
Sbjct  121  KAEARDWLSDSIDELNRQIEALEAEIESLQAQKKKKKKDSEKA-RLEELEKLIERHKFHI  179

Query  180  NKLELLLRALQNGAVETSQVMDLKESIKYYVDDGHNVDYCGEDETLYDDL  229
             KLEL+LR L+NG ++  QV D+KE I+YYV+   + D+  EDE +YDDL
Sbjct  180  EKLELILRLLENGELDPEQVDDIKEDIEYYVESNQDPDFV-EDEDIYDDL  228


>CDD:461199 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family.  NOT1, NOT2, 
NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates 
the basal and activated transcription of many genes. 
This family includes NOT2, NOT3 and NOT5.
Length=121

 Score = 184 bits (470),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 64/129 (50%), Positives = 78/129 (60%), Gaps = 8/129 (6%)

Query  486  ASLATCPEPADAEKPRHYRPSNPYNTPLYYPQEPLAIFDDPRLYDTGRIDTDTLFYLFYY  545
             S    P P DAE+P      NP      YPQEPL   + P  +   + D +TLFY+FY 
Sbjct  1    YSTFNSPWPLDAERPYEPDFRNPAC----YPQEPLPRLESPEKFS--KFDDETLFYIFYS  54

Query  546  RQGSYQQYLAAKALKNQSWRFHKQYQTWFQRHEEPKNITEDYEQGTYRFFDYESTWMNRR  605
              G Y QYLAAK LK +SWR+HK+ +TWF R EEPK IT +YE+GTY +FDY  TW  RR
Sbjct  55   MPGDYAQYLAAKELKKRSWRYHKKLRTWFTRDEEPKVITNEYERGTYIYFDY--TWEQRR  112

Query  606  KADFKFIYK  614
            K DF   Y+
Sbjct  113  KKDFTLDYE  121



Lambda      K        H        a         alpha
   0.309    0.125    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789057984


Query= TCONS_00010336

Length=620
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461155 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not comp...  361     7e-123
CDD:461199 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family. NOT1, ...  184     2e-56 


>CDD:461155 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not complex component. 
 
Length=228

 Score = 361 bits (928),  Expect = 7e-123, Method: Composition-based stats.
 Identities = 138/230 (60%), Positives = 178/230 (77%), Gaps = 4/230 (2%)

Query  2    TSRKTQQEIDKTFKKVAEGIQTFEGIYEKIRSTSNPTQRDKLEENLKREIKKLQRFRDQI  61
             +RK QQEID+T KKVAEG++ F+ IYEK+ S +N +Q++KLE +LK+EIKKLQR RDQI
Sbjct  1    AARKLQQEIDRTLKKVAEGLEEFDDIYEKLESATNSSQKEKLEADLKKEIKKLQRLRDQI  60

Query  62   KSWASGNEVKDKGPLLEQRRAIETCMEQFKAVEKEMKTKAYSKEGLS--AASRLDPKEKE  119
            K+W S N++KDK  LLE R+ IE  ME+FKAVEKE KTKA+SKEGLS  AAS+LDPKEKE
Sbjct  61   KTWLSSNDIKDKKKLLENRKLIEEAMERFKAVEKESKTKAFSKEGLSLAAASKLDPKEKE  120

Query  120  KLEACDFLSTCVDELQLKIEAMEAEEETLHVQMKKGKKDITKTNRLSDLSRILERHKWHV  179
            K EA D+LS  +DEL  +IEA+EAE E+L  Q KK KKD  K  RL +L +++ERHK+H+
Sbjct  121  KAEARDWLSDSIDELNRQIEALEAEIESLQAQKKKKKKDSEKA-RLEELEKLIERHKFHI  179

Query  180  NKLELLLRALQNGAVETSQVMDLKESIKYYVDDGHNVDYCGEDETLYDDL  229
             KLEL+LR L+NG ++  QV D+KE I+YYV+   + D+  EDE +YDDL
Sbjct  180  EKLELILRLLENGELDPEQVDDIKEDIEYYVESNQDPDFV-EDEDIYDDL  228


>CDD:461199 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family.  NOT1, NOT2, 
NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates 
the basal and activated transcription of many genes. 
This family includes NOT2, NOT3 and NOT5.
Length=121

 Score = 184 bits (470),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 64/129 (50%), Positives = 78/129 (60%), Gaps = 8/129 (6%)

Query  486  ASLATCPEPADAEKPRHYRPSNPYNTPLYYPQEPLAIFDDPRLYDTGRIDTDTLFYLFYY  545
             S    P P DAE+P      NP      YPQEPL   + P  +   + D +TLFY+FY 
Sbjct  1    YSTFNSPWPLDAERPYEPDFRNPAC----YPQEPLPRLESPEKFS--KFDDETLFYIFYS  54

Query  546  RQGSYQQYLAAKALKNQSWRFHKQYQTWFQRHEEPKNITEDYEQGTYRFFDYESTWMNRR  605
              G Y QYLAAK LK +SWR+HK+ +TWF R EEPK IT +YE+GTY +FDY  TW  RR
Sbjct  55   MPGDYAQYLAAKELKKRSWRYHKKLRTWFTRDEEPKVITNEYERGTYIYFDY--TWEQRR  112

Query  606  KADFKFIYK  614
            K DF   Y+
Sbjct  113  KKDFTLDYE  121



Lambda      K        H        a         alpha
   0.309    0.125    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789057984


Query= TCONS_00010335

Length=620
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461155 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not comp...  361     7e-123
CDD:461199 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family. NOT1, ...  184     2e-56 


>CDD:461155 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not complex component. 
 
Length=228

 Score = 361 bits (928),  Expect = 7e-123, Method: Composition-based stats.
 Identities = 138/230 (60%), Positives = 178/230 (77%), Gaps = 4/230 (2%)

Query  2    TSRKTQQEIDKTFKKVAEGIQTFEGIYEKIRSTSNPTQRDKLEENLKREIKKLQRFRDQI  61
             +RK QQEID+T KKVAEG++ F+ IYEK+ S +N +Q++KLE +LK+EIKKLQR RDQI
Sbjct  1    AARKLQQEIDRTLKKVAEGLEEFDDIYEKLESATNSSQKEKLEADLKKEIKKLQRLRDQI  60

Query  62   KSWASGNEVKDKGPLLEQRRAIETCMEQFKAVEKEMKTKAYSKEGLS--AASRLDPKEKE  119
            K+W S N++KDK  LLE R+ IE  ME+FKAVEKE KTKA+SKEGLS  AAS+LDPKEKE
Sbjct  61   KTWLSSNDIKDKKKLLENRKLIEEAMERFKAVEKESKTKAFSKEGLSLAAASKLDPKEKE  120

Query  120  KLEACDFLSTCVDELQLKIEAMEAEEETLHVQMKKGKKDITKTNRLSDLSRILERHKWHV  179
            K EA D+LS  +DEL  +IEA+EAE E+L  Q KK KKD  K  RL +L +++ERHK+H+
Sbjct  121  KAEARDWLSDSIDELNRQIEALEAEIESLQAQKKKKKKDSEKA-RLEELEKLIERHKFHI  179

Query  180  NKLELLLRALQNGAVETSQVMDLKESIKYYVDDGHNVDYCGEDETLYDDL  229
             KLEL+LR L+NG ++  QV D+KE I+YYV+   + D+  EDE +YDDL
Sbjct  180  EKLELILRLLENGELDPEQVDDIKEDIEYYVESNQDPDFV-EDEDIYDDL  228


>CDD:461199 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family.  NOT1, NOT2, 
NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates 
the basal and activated transcription of many genes. 
This family includes NOT2, NOT3 and NOT5.
Length=121

 Score = 184 bits (470),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 64/129 (50%), Positives = 78/129 (60%), Gaps = 8/129 (6%)

Query  486  ASLATCPEPADAEKPRHYRPSNPYNTPLYYPQEPLAIFDDPRLYDTGRIDTDTLFYLFYY  545
             S    P P DAE+P      NP      YPQEPL   + P  +   + D +TLFY+FY 
Sbjct  1    YSTFNSPWPLDAERPYEPDFRNPAC----YPQEPLPRLESPEKFS--KFDDETLFYIFYS  54

Query  546  RQGSYQQYLAAKALKNQSWRFHKQYQTWFQRHEEPKNITEDYEQGTYRFFDYESTWMNRR  605
              G Y QYLAAK LK +SWR+HK+ +TWF R EEPK IT +YE+GTY +FDY  TW  RR
Sbjct  55   MPGDYAQYLAAKELKKRSWRYHKKLRTWFTRDEEPKVITNEYERGTYIYFDY--TWEQRR  112

Query  606  KADFKFIYK  614
            K DF   Y+
Sbjct  113  KKDFTLDYE  121



Lambda      K        H        a         alpha
   0.309    0.125    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789057984


Query= TCONS_00017086

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461155 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not comp...  216     6e-68
CDD:461199 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family. NOT1, ...  167     2e-50


>CDD:461155 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not complex component. 
 
Length=228

 Score = 216 bits (553),  Expect = 6e-68, Method: Composition-based stats.
 Identities = 87/145 (60%), Positives = 111/145 (77%), Gaps = 4/145 (3%)

Query  1    MEQFKAVEKEMKTKAYSKEGLS--AASRLDPKEKEKLEACDFLSTCVDELQLKIEAMEAE  58
            ME+FKAVEKE KTKA+SKEGLS  AAS+LDPKEKEK EA D+LS  +DEL  +IEA+EAE
Sbjct  86   MERFKAVEKESKTKAFSKEGLSLAAASKLDPKEKEKAEARDWLSDSIDELNRQIEALEAE  145

Query  59   EETLHVQMKKGKKDITKTNRLSDLSRILERHKWHVNKLELLLRALQNGAVETSQVMDLKE  118
             E+L  Q KK KKD  K  RL +L +++ERHK+H+ KLEL+LR L+NG ++  QV D+KE
Sbjct  146  IESLQAQKKKKKKDSEKA-RLEELEKLIERHKFHIEKLELILRLLENGELDPEQVDDIKE  204

Query  119  SIKYYVDDGHNVDYCGEDETLYDDL  143
             I+YYV+   + D+  EDE +YDDL
Sbjct  205  DIEYYVESNQDPDFV-EDEDIYDDL  228


>CDD:461199 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family.  NOT1, NOT2, 
NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates 
the basal and activated transcription of many genes. 
This family includes NOT2, NOT3 and NOT5.
Length=121

 Score = 167 bits (425),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 58/116 (50%), Positives = 71/116 (61%), Gaps = 8/116 (7%)

Query  400  ASLATCPEPADAEKPRHYRPSNPYNTPLYYPQEPLAIFDDPRLYDTGRIDTDTLFYLFYY  459
             S    P P DAE+P      NP      YPQEPL   + P  +   + D +TLFY+FY 
Sbjct  1    YSTFNSPWPLDAERPYEPDFRNPAC----YPQEPLPRLESPEKFS--KFDDETLFYIFYS  54

Query  460  RQGSYQQYLAAKALKNQSWRFHKQYQTWFQRHEEPKNITEDYEQGTYRFFDYESTW  515
              G Y QYLAAK LK +SWR+HK+ +TWF R EEPK IT +YE+GTY +FDY  TW
Sbjct  55   MPGDYAQYLAAKELKKRSWRYHKKLRTWFTRDEEPKVITNEYERGTYIYFDY--TW  108



Lambda      K        H        a         alpha
   0.309    0.125    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00017087

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00010337

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00010339

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00010338

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00017088

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00010340

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00017089

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.147    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00017090

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00010342

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00017091

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         157     1e-44
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            64.0    5e-12


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 157 bits (398),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 86/297 (29%), Positives = 137/297 (46%), Gaps = 26/297 (9%)

Query  30   VCRIASLMLLLIRYSGYDQGMMGGVNNAKDYIDLMGFGYTEMKDGQPTPVVTNSLLQGGI  89
            V  +A+L   L    GYD G++G       ++ L+ F          + +   S+L G I
Sbjct  1    VALVAALGGFLF---GYDTGVIGA------FLTLIDFFKNFGLSKSVSSLAALSVLSGLI  51

Query  90   VSVYYLGTLCGCLLGGWIGDSIGRIKTIASGAVWAIFGAALQ--CSAQNHNWMICA-RFI  146
            VS++ +G   G L  G +GD  GR K++    V  + GA LQ     +   + +   R +
Sbjct  52   VSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVL  111

Query  147  NGIGTGILNAIVPVWATETAEHTSRGQFIAIEFTLNIFGVVLAYWLEFGLSFIDGGRSPF  206
             GIG G  + + P++ +E A    RG   ++      FG++LAY    GL+         
Sbjct  112  VGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSN---SD  168

Query  207  RWRFPIAFQIIFLIVLFAAVWFFPESPRWLVKVGREQEARYILGRLRGSSGDDAVRAEAE  266
             WR P+  Q++  ++L   + F PESPRWLV+ GR +EAR +L +LRG    D      E
Sbjct  169  GWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVD-----RE  223

Query  267  FRDIQSVAELEKTINHSNSYLSMLFGYKSGKLHLGRRVQLVIWLQIMQEWVGIAGVT  323
              +I     LE       +    LF  K+ +    +R+ + + LQI Q+  GI  + 
Sbjct  224  LDEI--KDSLEAGQEAEKASWKELFSTKTRR----QRLLIGVMLQIFQQLTGINAIF  274


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 64.0 bits (156),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 28/165 (17%), Positives = 53/165 (32%), Gaps = 6/165 (4%)

Query  89   IVSVYYLGTLCGCLLGGWIGDSIGRIKTIASGAVWAIFGAALQCSAQNHNWMICARFING  148
            +++++ LG      L G + D  GR + +  G +    G  L   A +   ++  R + G
Sbjct  37   LLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG  96

Query  149  IGTGILNAIVPVWATETAEHTSRGQFIAIEFTLNIFGVVLAYWLEFGLSFIDGGRSPFRW  208
            +G G L         +      RG+ + +       G  L   L  G          F W
Sbjct  97   LGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLL--GGLLASL----FGW  150

Query  209  RFPIAFQIIFLIVLFAAVWFFPESPRWLVKVGREQEARYILGRLR  253
            R       I  ++    +      P        E+    ++   +
Sbjct  151  RAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWK  195



Lambda      K        H        a         alpha
   0.326    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00010343

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         78.5    2e-18


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 78.5 bits (194),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 41/132 (31%), Positives = 62/132 (47%), Gaps = 12/132 (9%)

Query  2    SISGLSFIDGGRSPFRWRFPIAFQIIFLIVLFAAVWFFPESPRWLVKVGREQEARYILGR  61
             I GL       +   WR P+  Q++  ++L   + F PESPRWLV+ GR +EAR +L +
Sbjct  155  YIFGLGLNKTS-NSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAK  213

Query  62   LRGSSGDDAVRAEAEFRDIQSVAELEKTINHSNSYLSMLFGYKSGKLHLGRRVQLVIWLQ  121
            LRG    D      E  +I     LE       +    LF  K+ +    +R+ + + LQ
Sbjct  214  LRGVPDVD-----RELDEI--KDSLEAGQEAEKASWKELFSTKTRR----QRLLIGVMLQ  262

Query  122  IMQEWVGIAGVT  133
            I Q+  GI  + 
Sbjct  263  IFQQLTGINAIF  274



Lambda      K        H        a         alpha
   0.327    0.141    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00010344

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         251     6e-78
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            74.8    5e-15


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 251 bits (643),  Expect = 6e-78, Method: Composition-based stats.
 Identities = 142/485 (29%), Positives = 225/485 (46%), Gaps = 37/485 (8%)

Query  30   VCRIASLMLLLIRYSGYDQGMMGGVNNAKDYIDLMGFGYTEMKDGQPTPVVTNSLLQGGI  89
            V  +A+L   L    GYD G++G       ++ L+ F          + +   S+L G I
Sbjct  1    VALVAALGGFLF---GYDTGVIGA------FLTLIDFFKNFGLSKSVSSLAALSVLSGLI  51

Query  90   VSVYYLGTLCGCLLGGWIGDSIGRIKTIASGAVWAIFGAALQ--CSAQNHNWMICA-RFI  146
            VS++ +G   G L  G +GD  GR K++    V  + GA LQ     +   + +   R +
Sbjct  52   VSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVL  111

Query  147  NGIGTGILNAIVPVWATETAEHTSRGQFIAIEFTLNIFGVVLAYWLEFGLSFIDGGRSPF  206
             GIG G  + + P++ +E A    RG   ++      FG++LAY    GL+         
Sbjct  112  VGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSN---SD  168

Query  207  RWRFPIAFQIIFLIVLFAAVWFFPESPRWLVKVGREQEARYILGRLRGSSGDDAVRAEAE  266
             WR P+  Q++  ++L   + F PESPRWLV+ GR +EAR +L +LRG    D      E
Sbjct  169  GWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVD-----RE  223

Query  267  FRDIQSVAELEKTINHSNSYLSMLFGYKSGKLHLGRRVQLVIWLQIMQEWVGIAGVTVYA  326
              +I     LE       +    LF  K+ +    +R+ + + LQI Q+  GI  +  Y+
Sbjct  224  LDEI--KDSLEAGQEAEKASWKELFSTKTRR----QRLLIGVMLQIFQQLTGINAIFYYS  277

Query  327  PTIFSIAGFDSMKSQWISGLNNIFYMFATLICVFTLDRIGRRWTLYWGSVAQGIAMFLAG  386
             TIF   G     S  ++ +  +     T I +F +DR GRR  L  G+    I   + G
Sbjct  278  TTIFENLGLS--DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILG  335

Query  387  GFSRLAINAREAGDASKASSYGAAAASMIFIFTSVFGATWLTVPWIYPAEIFPLAVRARG  446
              + L ++  +          G  A   I +F + F   W  VPW+  +E+FPL+VR++ 
Sbjct  336  IVALLGVSKSDWA--------GIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKA  387

Query  447  NAWGVVGWSIGNGWLTLLCPVMFSSIGE-KTLYIFAISNVITIPMVWALYPESNQRTLED  505
             A       + N  +  L P++  +IG   T +IFA   V+ I  V+   PE+  RTLE+
Sbjct  388  MALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEE  447

Query  506  MDLLF  510
            +D LF
Sbjct  448  IDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 74.8 bits (184),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 53/369 (14%), Positives = 102/369 (28%), Gaps = 66/369 (18%)

Query  89   IVSVYYLGTLCGCLLGGWIGDSIGRIKTIASGAVWAIFGAALQCSAQNHNWMICARFING  148
            +++++ LG      L G + D  GR + +  G +    G  L   A +   ++  R + G
Sbjct  37   LLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG  96

Query  149  IGTGILNAIVPVWATETAEHTSRGQFIAIEFTLNIFGVVLAYWLEFGLSFIDGGRSPFRW  208
            +G G L         +      RG+ + +       G  L   L  G          F W
Sbjct  97   LGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLL--GGLLASL----FGW  150

Query  209  RFPIAFQIIFLIVLFAAVWFFPESPRWLVKVGREQEARYILGRLRGSSGDDAVRAEAEFR  268
            R       I  ++    +      P        E+    ++   +               
Sbjct  151  RAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWK---------------  195

Query  269  DIQSVAELEKTINHSNSYLSMLFGYKSGKLHLGRRVQLVIWLQIMQEWVGIAGVTVYAPT  328
                                           L R   L + L ++       G+  Y P 
Sbjct  196  ------------------------------ALLRDPVLWLLLALLLFGFAFFGLLTYLPL  225

Query  329  IFSIAGFDSMKSQWISGLNNIFYMFATLICVFTLDRIGRRWTLYWGSVAQGIAMFLAGGF  388
               + G  ++ +  + GL  +      L+     DR+GRR  L    +   +A       
Sbjct  226  YQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLL  285

Query  389  SRLAINAREAGDASKASSYGAAAASMIFIFTSVFGATWLTVPWIYPAEIFPLAVRARGNA  448
            S               +         + +    FG  +  +     +++ P   R   + 
Sbjct  286  S--------------LTLSSLWLLLALLLLGFGFGLVFPAL-NALVSDLAPKEERGTASG  330

Query  449  WGVVGWSIG  457
                  S+G
Sbjct  331  LYNTAGSLG  339



Lambda      K        H        a         alpha
   0.324    0.138    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 711347728


Query= TCONS_00010345

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460733 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomann...  60.2    2e-12


>CDD:460733 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomannomutase, 
alpha/beta/alpha domain III.  
Length=115

 Score = 60.2 bits (147),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/90 (27%), Positives = 42/90 (47%), Gaps = 8/90 (9%)

Query  1    MLEKMARSKGFHFEETLTGFKWMGNIARRLEESGYHVPFAFEEALGYMFPDVCHDKDGVT  60
             L+++A+  G     T  G K+   +  ++ E G    F  EE+   +F D    KDG+ 
Sbjct  34   GLDRVAKKLGGKLVRTPVGDKY---VKEKMREEGA--LFGGEESGHIIFLDHATTKDGIL  88

Query  61   AAMVFLAAEARWRSQGLTPYSKLQQLFKDF  90
            AA++ L   AR    G +    L++L + +
Sbjct  89   AALLVLEILAR---TGKSLSELLEELPEKY  115



Lambda      K        H        a         alpha
   0.323    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00010346

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460733 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomann...  60.2    2e-12


>CDD:460733 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomannomutase, 
alpha/beta/alpha domain III.  
Length=115

 Score = 60.2 bits (147),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/90 (27%), Positives = 42/90 (47%), Gaps = 8/90 (9%)

Query  1    MLEKMARSKGFHFEETLTGFKWMGNIARRLEESGYHVPFAFEEALGYMFPDVCHDKDGVT  60
             L+++A+  G     T  G K+   +  ++ E G    F  EE+   +F D    KDG+ 
Sbjct  34   GLDRVAKKLGGKLVRTPVGDKY---VKEKMREEGA--LFGGEESGHIIFLDHATTKDGIL  88

Query  61   AAMVFLAAEARWRSQGLTPYSKLQQLFKDF  90
            AA++ L   AR    G +    L++L + +
Sbjct  89   AALLVLEILAR---TGKSLSELLEELPEKY  115



Lambda      K        H        a         alpha
   0.323    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00010347

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460733 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomann...  60.2    2e-12


>CDD:460733 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomannomutase, 
alpha/beta/alpha domain III.  
Length=115

 Score = 60.2 bits (147),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/90 (27%), Positives = 42/90 (47%), Gaps = 8/90 (9%)

Query  1    MLEKMARSKGFHFEETLTGFKWMGNIARRLEESGYHVPFAFEEALGYMFPDVCHDKDGVT  60
             L+++A+  G     T  G K+   +  ++ E G    F  EE+   +F D    KDG+ 
Sbjct  34   GLDRVAKKLGGKLVRTPVGDKY---VKEKMREEGA--LFGGEESGHIIFLDHATTKDGIL  88

Query  61   AAMVFLAAEARWRSQGLTPYSKLQQLFKDF  90
            AA++ L   AR    G +    L++L + +
Sbjct  89   AALLVLEILAR---TGKSLSELLEELPEKY  115



Lambda      K        H        a         alpha
   0.323    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00010348

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         235     4e-72
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.9    8e-14


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 235 bits (602),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 140/481 (29%), Positives = 221/481 (46%), Gaps = 47/481 (10%)

Query  26   VAALSILFFGYDQGMMGGVNNAKDYIDLMGFGYTEMKDGQPTPVVTNSLLQGGIVSVYYL  85
            VAAL    FGYD G++G       ++ L+ F          + +   S+L G IVS++ +
Sbjct  4    VAALGGFLFGYDTGVIGA------FLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSV  57

Query  86   GTLCGCLLGGWIGDSIGRIKTIASGAVWAIFGAALQ--CSAQNHNWMICA-RFINGIGTG  142
            G   G L  G +GD  GR K++    V  + GA LQ     +   + +   R + GIG G
Sbjct  58   GCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVG  117

Query  143  ILNAIVPVWATETAEHTSRGQFIAIEFTLNIFGVVLAYWLEL----------W-VPFSSP  191
              + + P++ +E A    RG   ++      FG++LAY   L          W +P    
Sbjct  118  GASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGL-  176

Query  192  TSSEEIIFLIVLFAAVWFFPESPRWLVKVGREQEARYILGRLRGSSGDDAVRAEAEFRDI  251
                +++  ++L   + F PESPRWLV+ GR +EAR +L +LRG    D      E  +I
Sbjct  177  ----QLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVD-----RELDEI  227

Query  252  QSVAELEKTINHSNSYLSMLFGYKSGKLHLGRRVQLVIWLQIMQEWVGIAGVTVYAPTIF  311
                 LE       +    LF  K+ +    +R+ + + LQI Q+  GI  +  Y+ TIF
Sbjct  228  --KDSLEAGQEAEKASWKELFSTKTRR----QRLLIGVMLQIFQQLTGINAIFYYSTTIF  281

Query  312  SIAGFDSMKSQWISGLNNIFYMFATLICVFTLDRIGRRWTLYWGSVAQGIAMFLAGGFSR  371
               G     S  ++ +  +     T I +F +DR GRR  L  G+    I   + G  + 
Sbjct  282  ENLGLS--DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVAL  339

Query  372  LAINAREAGDASKASSYGAAAASMIFIFTSVFGATWLTVPWIYPAEIFPLAVRARGNAWG  431
            L ++  +          G  A   I +F + F   W  VPW+  +E+FPL+VR++  A  
Sbjct  340  LGVSKSDWA--------GIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALA  391

Query  432  VVGWSIGNGWLTLLCPVMFSSIGE-KTLYIFAISNVITIPMVWALYPESNQRTLEDMDLL  490
                 + N  +  L P++  +IG   T +IFA   V+ I  V+   PE+  RTLE++D L
Sbjct  392  TAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDEL  451

Query  491  F  491
            F
Sbjct  452  F  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.9 bits (174),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 104/362 (29%), Gaps = 61/362 (17%)

Query  79   IVSVYYLGTLCGCLLGGWIGDSIGRIKTIASGAVWAIFGAALQCSAQNHNWMICARFING  138
            +++++ LG      L G + D  GR + +  G +    G  L   A +   ++  R + G
Sbjct  37   LLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG  96

Query  139  IGTGILNAIVPVWATETAEHTSRGQFIAIEFTLNIFGVVLAYWLELWVPFSSPTSSEEII  198
            +G G L         +      RG+ + +       G  L   L   +       +  +I
Sbjct  97   LGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLI  156

Query  199  FLIVLFAA--VWFFPESPRWLVKVGREQEARYILGRLRGSSGDDAVRAEAEFRDIQSVAE  256
              I+   A  +   P  P    +    +EAR  L                          
Sbjct  157  LAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWK---------------------  195

Query  257  LEKTINHSNSYLSMLFGYKSGKLHLGRRVQLVIWLQIMQEWVGIAGVTVYAPTIFSIAGF  316
                                    L R   L + L ++       G+  Y P    + G 
Sbjct  196  -----------------------ALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGL  232

Query  317  DSMKSQWISGLNNIFYMFATLICVFTLDRIGRRWTLYWGSVAQGIAMFLAGGFSRLAINA  376
             ++ +  + GL  +      L+     DR+GRR  L    +   +A       S      
Sbjct  233  SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLS------  286

Query  377  REAGDASKASSYGAAAASMIFIFTSVFGATWLTVPWIYPAEIFPLAVRARGNAWGVVGWS  436
                     +         + +    FG  +  +     +++ P   R   +       S
Sbjct  287  --------LTLSSLWLLLALLLLGFGFGLVFPAL-NALVSDLAPKEERGTASGLYNTAGS  337

Query  437  IG  438
            +G
Sbjct  338  LG  339



Lambda      K        H        a         alpha
   0.323    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0647    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00010349

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         251     3e-78
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            72.1    4e-14


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 251 bits (644),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 143/479 (30%), Positives = 224/479 (47%), Gaps = 34/479 (7%)

Query  26   VAALSILFFGYDQGMMGGVNNAKDYIDLMGFGYTEMKDGQPTPVVTNSLLQGGIVSVYYL  85
            VAAL    FGYD G++G       ++ L+ F          + +   S+L G IVS++ +
Sbjct  4    VAALGGFLFGYDTGVIGA------FLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSV  57

Query  86   GTLCGCLLGGWIGDSIGRIKTIASGAVWAIFGAALQ--CSAQNHNWMICA-RFINGIGTG  142
            G   G L  G +GD  GR K++    V  + GA LQ     +   + +   R + GIG G
Sbjct  58   GCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVG  117

Query  143  ILNAIVPVWATETAEHTSRGQFIAIEFTLNIFGVVLAYWLEFGLSFIDGGRSPFRWRFPI  202
              + + P++ +E A    RG   ++      FG++LAY    GL+          WR P+
Sbjct  118  GASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSN---SDGWRIPL  174

Query  203  AFQIIFLIVLFAAVWFFPESPRWLVKVGREQEARYILGRLRGSSGDDAVRAEAEFRDIQS  262
              Q++  ++L   + F PESPRWLV+ GR +EAR +L +LRG    D      E  +I  
Sbjct  175  GLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVD-----RELDEI--  227

Query  263  VAELEKTINHSNSYLSMLFGYKSGKLHLGRRVQLVIWLQIMQEWVGIAGVTVYAPTIFSI  322
               LE       +    LF  K+ +    +R+ + + LQI Q+  GI  +  Y+ TIF  
Sbjct  228  KDSLEAGQEAEKASWKELFSTKTRR----QRLLIGVMLQIFQQLTGINAIFYYSTTIFEN  283

Query  323  AGFDSMKSQWISGLNNIFYMFATLICVFTLDRIGRRWTLYWGSVAQGIAMFLAGGFSRLA  382
             G     S  ++ +  +     T I +F +DR GRR  L  G+    I   + G  + L 
Sbjct  284  LGLS--DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLG  341

Query  383  INAREAGDASKASSYGAAAASMIFIFTSVFGATWLTVPWIYPAEIFPLAVRARGNAWGVV  442
            ++  +          G  A   I +F + F   W  VPW+  +E+FPL+VR++  A    
Sbjct  342  VSKSDWA--------GIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATA  393

Query  443  GWSIGNGWLTLLCPVMFSSIGE-KTLYIFAISNVITIPMVWALYPESNQRTLEDMDLLF  500
               + N  +  L P++  +IG   T +IFA   V+ I  V+   PE+  RTLE++D LF
Sbjct  394  ANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 72.1 bits (177),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 53/369 (14%), Positives = 102/369 (28%), Gaps = 66/369 (18%)

Query  79   IVSVYYLGTLCGCLLGGWIGDSIGRIKTIASGAVWAIFGAALQCSAQNHNWMICARFING  138
            +++++ LG      L G + D  GR + +  G +    G  L   A +   ++  R + G
Sbjct  37   LLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG  96

Query  139  IGTGILNAIVPVWATETAEHTSRGQFIAIEFTLNIFGVVLAYWLEFGLSFIDGGRSPFRW  198
            +G G L         +      RG+ + +       G  L   L  G          F W
Sbjct  97   LGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLL--GGLLASL----FGW  150

Query  199  RFPIAFQIIFLIVLFAAVWFFPESPRWLVKVGREQEARYILGRLRGSSGDDAVRAEAEFR  258
            R       I  ++    +      P        E+    ++   +               
Sbjct  151  RAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWK---------------  195

Query  259  DIQSVAELEKTINHSNSYLSMLFGYKSGKLHLGRRVQLVIWLQIMQEWVGIAGVTVYAPT  318
                                           L R   L + L ++       G+  Y P 
Sbjct  196  ------------------------------ALLRDPVLWLLLALLLFGFAFFGLLTYLPL  225

Query  319  IFSIAGFDSMKSQWISGLNNIFYMFATLICVFTLDRIGRRWTLYWGSVAQGIAMFLAGGF  378
               + G  ++ +  + GL  +      L+     DR+GRR  L    +   +A       
Sbjct  226  YQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLL  285

Query  379  SRLAINAREAGDASKASSYGAAAASMIFIFTSVFGATWLTVPWIYPAEIFPLAVRARGNA  438
            S               +         + +    FG  +  +     +++ P   R   + 
Sbjct  286  S--------------LTLSSLWLLLALLLLGFGFGLVFPAL-NALVSDLAPKEERGTASG  330

Query  439  WGVVGWSIG  447
                  S+G
Sbjct  331  LYNTAGSLG  339



Lambda      K        H        a         alpha
   0.324    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 696403448


Query= TCONS_00017093

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         154     1e-43


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 154 bits (392),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 139/306 (45%), Gaps = 36/306 (12%)

Query  26   VAALSILFFGYDQGMMGGVNNAKDYIDLMGFGYTEMKDGQPTPVVTNSLLQGGIVSVYYL  85
            VAAL    FGYD G++G       ++ L+ F          + +   S+L G IVS++ +
Sbjct  4    VAALGGFLFGYDTGVIGA------FLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSV  57

Query  86   GTLCGCLLGGWIGDSIGRIKTIASGAVWAIFGAALQ--CSAQNHNWMICA-RFINGIGTG  142
            G   G L  G +GD  GR K++    V  + GA LQ     +   + +   R + GIG G
Sbjct  58   GCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVG  117

Query  143  ILNAIVPVWATETAEHTSRGQFIAIEFTLNIFGVVLAYWLEL----------W-VPFSSP  191
              + + P++ +E A    RG   ++      FG++LAY   L          W +P    
Sbjct  118  GASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGL-  176

Query  192  TSSEEIIFLIVLFAAVWFFPESPRWLVKVGREQEARYILGRLRGSSGDDAVRAEAEFRDI  251
                +++  ++L   + F PESPRWLV+ GR +EAR +L +LRG    D      E  +I
Sbjct  177  ----QLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVD-----RELDEI  227

Query  252  QSVAELEKTINHSNSYLSMLFGYKSGKLHLGRRVQLVIWLQIMQEWVGIAGVTVYAPTIF  311
                 LE       +    LF  K+ +    +R+ + + LQI Q+  GI  +  Y+ TIF
Sbjct  228  --KDSLEAGQEAEKASWKELFSTKTRR----QRLLIGVMLQIFQQLTGINAIFYYSTTIF  281

Query  312  SIAGFD  317
               G  
Sbjct  282  ENLGLS  287



Lambda      K        H        a         alpha
   0.324    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00010350

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         88.5    3e-21


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 88.5 bits (220),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 75/160 (47%), Gaps = 9/160 (6%)

Query  26   VAALSILFFGYDQGMMGGVNNAKDYIDLMGFGYTEMKDGQPTPVVTNSLLQGGIVSVYYL  85
            VAAL    FGYD G++G       ++ L+ F          + +   S+L G IVS++ +
Sbjct  4    VAALGGFLFGYDTGVIGA------FLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSV  57

Query  86   GTLCGCLLGGWIGDSIGRIKTIASGAVWAIFGAALQ--CSAQNHNWMICA-RFINGIGTG  142
            G   G L  G +GD  GR K++    V  + GA LQ     +   + +   R + GIG G
Sbjct  58   GCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVG  117

Query  143  ILNAIVPVWATETAEHTSRGQFIAIEFTLNIFGVVLAYWL  182
              + + P++ +E A    RG   ++      FG++LAY  
Sbjct  118  GASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIF  157



Lambda      K        H        a         alpha
   0.322    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00010351

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         88.5    3e-21


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 88.5 bits (220),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 75/160 (47%), Gaps = 9/160 (6%)

Query  26   VAALSILFFGYDQGMMGGVNNAKDYIDLMGFGYTEMKDGQPTPVVTNSLLQGGIVSVYYL  85
            VAAL    FGYD G++G       ++ L+ F          + +   S+L G IVS++ +
Sbjct  4    VAALGGFLFGYDTGVIGA------FLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSV  57

Query  86   GTLCGCLLGGWIGDSIGRIKTIASGAVWAIFGAALQ--CSAQNHNWMICA-RFINGIGTG  142
            G   G L  G +GD  GR K++    V  + GA LQ     +   + +   R + GIG G
Sbjct  58   GCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVG  117

Query  143  ILNAIVPVWATETAEHTSRGQFIAIEFTLNIFGVVLAYWL  182
              + + P++ +E A    RG   ++      FG++LAY  
Sbjct  118  GASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIF  157



Lambda      K        H        a         alpha
   0.322    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00010352

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         234     1e-71
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            73.6    1e-14


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 234 bits (600),  Expect = 1e-71, Method: Composition-based stats.
 Identities = 139/487 (29%), Positives = 222/487 (46%), Gaps = 50/487 (10%)

Query  30   VCRIASLMLLLIRYSGYDQGMMGGVNNAKDYIDLMGFGYTEMKDGQPTPVVTNSLLQGGI  89
            V  +A+L   L    GYD G++G       ++ L+ F          + +   S+L G I
Sbjct  1    VALVAALGGFLF---GYDTGVIGA------FLTLIDFFKNFGLSKSVSSLAALSVLSGLI  51

Query  90   VSVYYLGTLCGCLLGGWIGDSIGRIKTIASGAVWAIFGAALQ--CSAQNHNWMICA-RFI  146
            VS++ +G   G L  G +GD  GR K++    V  + GA LQ     +   + +   R +
Sbjct  52   VSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVL  111

Query  147  NGIGTGILNAIVPVWATETAEHTSRGQFIAIEFTLNIFGVVLAYWLEL----------W-  195
             GIG G  + + P++ +E A    RG   ++      FG++LAY   L          W 
Sbjct  112  VGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWR  171

Query  196  VPFSSPTSSEEIIFLIVLFAAVWFFPESPRWLVKVGREQEARYILGRLRGSSGDDAVRAE  255
            +P        +++  ++L   + F PESPRWLV+ GR +EAR +L +LRG    D     
Sbjct  172  IPLGL-----QLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVD-----  221

Query  256  AEFRDIQSVAELEKTINHSNSYLSMLFGYKSGKLHLGRRVQLVIWLQIMQEWVGIAGVTV  315
             E  +I     LE       +    LF  K+ +    +R+ + + LQI Q+  GI  +  
Sbjct  222  RELDEI--KDSLEAGQEAEKASWKELFSTKTRR----QRLLIGVMLQIFQQLTGINAIFY  275

Query  316  YAPTIFSIAGFDSMKSQWISGLNNIFYMFATLICVFTLDRIGRRWTLYWGSVAQGIAMFL  375
            Y+ TIF   G     S  ++ +  +     T I +F +DR GRR  L  G+    I   +
Sbjct  276  YSTTIFENLGLS--DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVI  333

Query  376  AGGFSRLAINAREAGDASKASSYGAAAASMIFIFTSVFGATWLTVPWIYPAEIFPLAVRA  435
             G  + L ++  +          G  A   I +F + F   W  VPW+  +E+FPL+VR+
Sbjct  334  LGIVALLGVSKSDWA--------GIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRS  385

Query  436  RGNAWGVVGWSIGNGWLTLLCPVMFSSIGE-KTLYIFAISNVITIPMVWALYPESNQRTL  494
            +  A       + N  +  L P++  +IG   T +IFA   V+ I  V+   PE+  RTL
Sbjct  386  KAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTL  445

Query  495  EDMDLLF  501
            E++D LF
Sbjct  446  EEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 73.6 bits (181),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 104/362 (29%), Gaps = 61/362 (17%)

Query  89   IVSVYYLGTLCGCLLGGWIGDSIGRIKTIASGAVWAIFGAALQCSAQNHNWMICARFING  148
            +++++ LG      L G + D  GR + +  G +    G  L   A +   ++  R + G
Sbjct  37   LLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG  96

Query  149  IGTGILNAIVPVWATETAEHTSRGQFIAIEFTLNIFGVVLAYWLELWVPFSSPTSSEEII  208
            +G G L         +      RG+ + +       G  L   L   +       +  +I
Sbjct  97   LGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLI  156

Query  209  FLIVLFAA--VWFFPESPRWLVKVGREQEARYILGRLRGSSGDDAVRAEAEFRDIQSVAE  266
              I+   A  +   P  P    +    +EAR  L                          
Sbjct  157  LAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWK---------------------  195

Query  267  LEKTINHSNSYLSMLFGYKSGKLHLGRRVQLVIWLQIMQEWVGIAGVTVYAPTIFSIAGF  326
                                    L R   L + L ++       G+  Y P    + G 
Sbjct  196  -----------------------ALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGL  232

Query  327  DSMKSQWISGLNNIFYMFATLICVFTLDRIGRRWTLYWGSVAQGIAMFLAGGFSRLAINA  386
             ++ +  + GL  +      L+     DR+GRR  L    +   +A       S      
Sbjct  233  SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLS------  286

Query  387  REAGDASKASSYGAAAASMIFIFTSVFGATWLTVPWIYPAEIFPLAVRARGNAWGVVGWS  446
                     +         + +    FG  +  +     +++ P   R   +       S
Sbjct  287  --------LTLSSLWLLLALLLLGFGFGLVFPAL-NALVSDLAPKEERGTASGLYNTAGS  337

Query  447  IG  448
            +G
Sbjct  338  LG  339



Lambda      K        H        a         alpha
   0.323    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 697897876


Query= TCONS_00017094

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         170     3e-49


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 170 bits (432),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 97/320 (30%), Positives = 150/320 (47%), Gaps = 23/320 (7%)

Query  2    SISGLSFIDGGRSPFRWRFPIAFQIIFLIVLFAAVWFFPESPRWLVKVGREQEARYILGR  61
             I GL       +   WR P+  Q++  ++L   + F PESPRWLV+ GR +EAR +L +
Sbjct  155  YIFGLGLNKTS-NSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAK  213

Query  62   LRGSSGDDAVRAEAEFRDIQSVAELEKTINHSNSYLSMLFGYKSGKLHLGRRVQLVIWLQ  121
            LRG    D      E  +I     LE       +    LF  K+ +    +R+ + + LQ
Sbjct  214  LRGVPDVD-----RELDEI--KDSLEAGQEAEKASWKELFSTKTRR----QRLLIGVMLQ  262

Query  122  IMQEWVGIAGVTVYAPTIFSIAGFDSMKSQWISGLNNIFYMFATLICVFTLDRIGRRWTL  181
            I Q+  GI  +  Y+ TIF   G     S  ++ +  +     T I +F +DR GRR  L
Sbjct  263  IFQQLTGINAIFYYSTTIFENLGLS--DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLL  320

Query  182  YWGSVAQGIAMFLAGGFSRLAINAREAGDASKASSYGAAAASMIFIFTSVFGATWLTVPW  241
              G+    I   + G  + L ++  +          G  A   I +F + F   W  VPW
Sbjct  321  LLGAAGMAICFVILGIVALLGVSKSDWA--------GIVAIVFIALFIAFFAMGWGPVPW  372

Query  242  IYPAEIFPLAVRARGNAWGVVGWSIGNGWLTLLCPVMFSSIGE-KTLYIFAISNVITIPM  300
            +  +E+FPL+VR++  A       + N  +  L P++  +IG   T +IFA   V+ I  
Sbjct  373  VIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIF  432

Query  301  VWALYPESNQRTLEDMDLLF  320
            V+   PE+  RTLE++D LF
Sbjct  433  VFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.325    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00010353

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425713 pfam00487, FA_desaturase, Fatty acid desaturase            89.3    2e-20


>CDD:425713 pfam00487, FA_desaturase, Fatty acid desaturase.  
Length=252

 Score = 89.3 bits (221),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 56/286 (20%), Positives = 97/286 (34%), Gaps = 44/286 (15%)

Query  248  WYGISAFLLGCFWHQLVFT-AHDAGHMGITHYFHVDSVIGIIIADYLG---GLSLGWWKR  303
               + A LLG F   +  + AH+A H  +     ++  +  ++    G   G+S   W+ 
Sbjct  3    LALLLALLLGLFLLGITGSLAHEASHGALFKKRRLNRWLNDLLGRLAGLPLGISYSAWRI  62

Query  304  NHNVHHIVTNAPEHDPDIEHMPFFAISHRFLTSLRSTYYDRIMHFDAMANFMLRYQNYLY  363
             H VHH  TN P+ DPD   +                       F  +  ++LR+     
Sbjct  63   AHLVHHRYTNGPDKDPDTAPLASR--------------------FRGLLRYLLRW----L  98

Query  364  YPILLFGRFNLYRLSWEYLFCGQAPKKGPAWWHRWFEIGGQVFFWYWFG--YGVLYRSIP  421
              +L+        L        +  +   +   RW  I   +    W G   G L     
Sbjct  99   LGLLVLAWLLALVLPLWLRRLARRKRPIKSRRRRWRLIAWLLLLAAWLGLWLGFLGLGGL  158

Query  422  NWSSRIAYILVSHMVTAPLHVQIT--LSHFAMSTADLGAQESFPQKMLRTTMDVDCPTWL  479
                     L+  +V   L   I   L H+     +       P +  R+        WL
Sbjct  159  LLL----LWLLPLLVFGFLLALIFNYLEHYGGDWGE------RPVETTRSIRS--PNWWL  206

Query  480  DFFHGGLQFQAIHHLYPRIPRHNLRRTQKLVIDFCRDTGIPYAVFT  525
            +   G L +   HHL+P +P + L +  + + +   + G+PY    
Sbjct  207  NLLTGNLNYHIEHHLFPGVPWYRLPKLHRRLREALPEHGLPYRSLG  252



Lambda      K        H        a         alpha
   0.326    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 706864444


Query= TCONS_00010354

Length=116
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459769 pfam00338, Ribosomal_S10, Ribosomal protein S10p/S20e....  104     3e-31


>CDD:459769 pfam00338, Ribosomal_S10, Ribosomal protein S10p/S20e.  This 
family includes small ribosomal subunit S10 from prokaryotes 
and S20 from eukaryotes.
Length=98

 Score = 104 bits (263),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 57/99 (58%), Gaps = 6/99 (6%)

Query  20   RITLTSRKVASLEKVCSELIDRARSKSLQVKGPVRLPTKTLHISTRKTPCGEGSKTWDKY  79
            RI L S   A L+     ++  A+   ++V GP+ LPTK L ++  K+P     K+ +++
Sbjct  1    RIKLKSYDHALLDSYAKFIVRAAKRLGIKVSGPIPLPTKRLRVTVLKSPHVH-KKSREQF  59

Query  80   EMRIHKRLIDLLAPT-ETVKQII----INIEAGVEVEVT  113
            EMR HKRLID+   T ETV  ++    +N+  GV+VEV 
Sbjct  60   EMRTHKRLIDIKDATPETVDALLRYLQLNLPEGVDVEVK  98



Lambda      K        H        a         alpha
   0.316    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00010355

Length=116
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459769 pfam00338, Ribosomal_S10, Ribosomal protein S10p/S20e....  104     3e-31


>CDD:459769 pfam00338, Ribosomal_S10, Ribosomal protein S10p/S20e.  This 
family includes small ribosomal subunit S10 from prokaryotes 
and S20 from eukaryotes.
Length=98

 Score = 104 bits (263),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 57/99 (58%), Gaps = 6/99 (6%)

Query  20   RITLTSRKVASLEKVCSELIDRARSKSLQVKGPVRLPTKTLHISTRKTPCGEGSKTWDKY  79
            RI L S   A L+     ++  A+   ++V GP+ LPTK L ++  K+P     K+ +++
Sbjct  1    RIKLKSYDHALLDSYAKFIVRAAKRLGIKVSGPIPLPTKRLRVTVLKSPHVH-KKSREQF  59

Query  80   EMRIHKRLIDLLAPT-ETVKQII----INIEAGVEVEVT  113
            EMR HKRLID+   T ETV  ++    +N+  GV+VEV 
Sbjct  60   EMRTHKRLIDIKDATPETVDALLRYLQLNLPEGVDVEVK  98



Lambda      K        H        a         alpha
   0.316    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00010360

Length=1417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. Thi...  526     2e-165
CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Doma...  113     8e-30 


>CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain 
is found at the N-terminus of SMC proteins. The SMC (structural 
maintenance of chromosomes) superfamily proteins have 
ATP-binding domains at the N- and C-termini, and two extended 
coiled-coil domains separated by a hinge in the middle. The 
eukaryotic SMC proteins form two kind of heterodimers: the 
SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute 
an essential part of higher order complexes, which are 
involved in chromatin and DNA dynamics. This family also includes 
the RecF and RecN proteins that are involved in DNA 
metabolism and recombination.
Length=1161

 Score = 526 bits (1356),  Expect = 2e-165, Method: Composition-based stats.
 Identities = 305/1194 (26%), Positives = 510/1194 (43%), Gaps = 37/1194 (3%)

Query  215   ITHLVLTNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDSLLFVFGFRASK-MRQGKI  273
             +  + +  FKSYA K ++ PF   F+++VGPNGSGKSN++D++LFV G R++K +R  ++
Sbjct  2     LKRIEIEGFKSYA-KTVILPFSPGFTAIVGPNGSGKSNILDAILFVLGERSAKSLRSERL  60

Query  274   SALIHNSANFPNLPFCEVEVHFQEILDLPGGEHEVVPDSQLMISRKAFKNNTSKYYMNGK  333
             S LIH S +   +   EVE+ F             +   ++ I R+ ++   S+YY+NGK
Sbjct  61    SDLIH-SKSGAFVNSAEVEITFDN-----EDHELPIDKEEVSIRRRVYRGGDSEYYINGK  114

Query  334   ETNFTAVTTLLRERGIDLDHKRFLILQGEVESIAQMKPKAANEHEDGLLEYLEDIIGTSK  393
                   V  LL  +GI  +   FL+  G++E IA MKP+   E E+              
Sbjct  115   NVTKKEVAELLESQGISPEAYNFLVQGGKIEIIAMMKPERRLEIEEEAAGSRLKRKKKEA  174

Query  394   YKAPIEEAAAELEQLNEVCVEKNNRVQHVEKEKTALEDKKNKALAYIQDENELAQKQSAL  453
              K  IEE     E + ++   K   ++  E+ K ALE  + K    +++E  L      L
Sbjct  175   LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKL  234

Query  454   YQIYIDECADNIRVTQEAILQMQELLNMELEKHEGNESGIKELEKAYKRGMREYETMEKE  513
              +  ID   + +R  QE I   ++ +  E EK        KE EK  K    E + + KE
Sbjct  235   NEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKE  294

Query  514   LQGLMKEMAKYDKESVKFEEKKKFLLGKQKKLEKSMQAARLAASECESLVQKHTDDINKK  573
              + L  E+ K ++  V  EEK K    ++KK EK ++  +    E E  +++       +
Sbjct  295   EEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAE  354

Query  574   TAETAKLEEEMKAEEEELSTIREGLKGKTQGLSEQIAAKQKSLEPWDERINKKLSAIAVA  633
               E  +LE+  +  E+    +    K +++ LS     K++ LE   E   +    + +A
Sbjct  355   EEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELA  414

Query  634   QSELDILRERSNAGAVQLEEAQSKVTSIEETLATKQTDLEERKAQKATLEEEVASLKRDL  693
             +   D+L+E        LEE +  +   +  L  ++ +LE+++ +    E E+   +  L
Sbjct  415   RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLL  474

Query  694   KKFTSRETEVRAHVSSARQKAEEARASLASTQNRGSVLAGLMRLKESGRIDGFHGRLGNL  753
             K+    + + +  +  +RQK EE     +  ++   VL  L++    GRI   HGRLG+L
Sbjct  475   KETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDL  534

Query  754   GTIDEKYDVAISTACPALDNMVVDTVEVGQQCIDYLRKNNLGRANFILLDRLPRRDMSPI  813
             G   E Y VAISTA     +   D VE  Q+ +  L +  LG     LL    +  +  I
Sbjct  535   GVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSI  594

Query  814   FTPESVPRLFDLVKPKDPKFAPAFYSVMQNTLVAKDLEQANRIAYGARRWRVVTLDGQLI  873
                E  P L                           L Q ++    A          + I
Sbjct  595   AVLEIDPILN--------------------------LAQLDKATLEADEDDKRAKVVEGI  628

Query  874   DVSGTMSGGGTRVARGGMSSKQVAEVSREQVSKLESDLEEMERKFQNFQNKQKHVEAAIR  933
                  ++             ++   +      K E      E   +  + ++   +A   
Sbjct  629   LKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESE  688

Query  934   EKSEEIPRVETKIQKIMIEIESANRSLADAQRRVKELSVAHKPSKADANQAEQLEAQIAA  993
                EEI R + +I+K     +   + L      +    V     K +       +     
Sbjct  689   LAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEE  748

Query  994   LEEEIEDLRAQKGGIEEEIQTLQNKIMEVGGVRLRSQKAKVDGLKEQISLLAEEISNAEI  1053
              EEE +    ++   EE+ +    +           +    +  +E++    EE+   E 
Sbjct  749   EEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEE  808

Query  1054  GKSKNEKLIMKHQKAR--AEAERELEQVAEGLEKLNADVENQANDASGWKQGVEEAQEAL  1111
                +  +L+ + Q      E  +E E     LE        +  +    ++  EE  +  
Sbjct  809   ELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEEL-ERLEEEITKEE  867

Query  1112  ETKKGELKTLKQELDEKVAELNETRATEIEMRNKLEENQKALTENEKRQRYWSEKLSKLT  1171
               ++  LK  + E  +   EL      E E + +LEE  + L   E+++    E++ +  
Sbjct  868   LLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEA  927

Query  1172  LQNVSDLGEEQQPTELQMYTKDELSEMNKESLKAVIAALEEKTQNASVDLSVIEEYRRRA  1231
                +    E ++    +   K++     +E  +     L  K +   V+L  IEE+  + 
Sbjct  928   EILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKE  987

Query  1232  AEYESRAADLATALASRDSAKARLDGLRSARLNGFMEGFGIISLRLKEMYQMITMGGNAE  1291
               Y     +       +      +      RL  F+E F  I+    +++  + +GG+AE
Sbjct  988   ERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGWNKVFFYLELGGSAE  1047

Query  1292  LELVDSLDPFSEGILFSVMPPKKSWKNIGNLSGGEKTLSSLALVFALHHYKPTPLYVMDE  1351
             L L D  DPFS GI  S  PP K  KN+  LSGGEKTL +LAL+FA+  YKP P Y++DE
Sbjct  1048  LRLEDPDDPFSGGIEISARPPGKGVKNLDLLSGGEKTLVALALIFAIQKYKPAPFYLLDE  1107

Query  1352  IDAALDFRNVSIVASYIRERTKNAQFIVISLRNNMFELASRLVGVYKVSHMTKS  1405
             IDAALD +NVS VA+ ++E +KNAQFIVISLR  M E A +LVGV  V +   +
Sbjct  1108  IDAALDDQNVSRVANLLKELSKNAQFIVISLREEMLEKADKLVGVTMVENGVST  1161


>CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Domain.  This 
family represents the hinge region of the SMC (Structural 
Maintenance of Chromosomes) family of proteins. The hinge region 
is responsible for formation of the DNA interacting dimer. 
It is also possible that the precise structure of it is 
an essential determinant of the specificity of the DNA-protein 
interaction.
Length=116

 Score = 113 bits (284),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 65/117 (56%), Gaps = 3/117 (3%)

Query  743  IDGFHGRLGNLGTIDEKYDVAISTAC-PALDNMVVDTVEVGQQCIDYLRKNNLGRANFIL  801
            + G  GRL +L  +DE Y+ A+  A    L  +VVD  +  ++ I++L+KN LGRA F+ 
Sbjct  1    LKGVLGRLADLIEVDEGYEKAVEAALGGRLQAVVVDDEDDAKRAIEFLKKNKLGRATFLP  60

Query  802  LDRLPRRDMSPIFTPES-VPRLFDLVKPKDPKFAPAFYSVMQNTLVAKDLEQANRIA  857
            LDRL  R   P    +     L DLV+  D ++  A   ++ NTLV  DL++A  +A
Sbjct  61   LDRLKPRPRRPGADLKGGAGPLLDLVEY-DDEYRKALRYLLGNTLVVDDLDEALELA  116



Lambda      K        H        a         alpha
   0.309    0.126    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1815735400


Query= TCONS_00010359

Length=943
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. Thi...  314     9e-92
CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Doma...  111     1e-29


>CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain 
is found at the N-terminus of SMC proteins. The SMC (structural 
maintenance of chromosomes) superfamily proteins have 
ATP-binding domains at the N- and C-termini, and two extended 
coiled-coil domains separated by a hinge in the middle. The 
eukaryotic SMC proteins form two kind of heterodimers: the 
SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute 
an essential part of higher order complexes, which are 
involved in chromatin and DNA dynamics. This family also includes 
the RecF and RecN proteins that are involved in DNA 
metabolism and recombination.
Length=1161

 Score = 314 bits (805),  Expect = 9e-92, Method: Composition-based stats.
 Identities = 224/933 (24%), Positives = 381/933 (41%), Gaps = 29/933 (3%)

Query  1     MQELLNMELEKHEGNESGIKELEKAYKRGMREYETMEKELQGLMKEMAKYDKESVKFEEK  60
              ++ +  E EK        KE EK  K    E + + KE + L  E+ K ++  V  EEK
Sbjct  256   SKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEK  315

Query  61    KKFLLGKQKKLEKSMQAARLAASECESLVQKHTDDINKKTAETAKLEEEMKAEEEELSTI  120
              K    ++KK EK ++  +    E E  +++       +  E  +LE+  +  E+    +
Sbjct  316   LKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEEL  375

Query  121   REGLKGKTQGLSEQIAAKQKSLEPWDERINKKLSAIAVAQSELDILRERSNAGAVQLEEA  180
                 K +++ LS     K++ LE   E   +    + +A+   D+L+E        LEE 
Sbjct  376   LAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEE  435

Query  181   QSKVTSIEETLATKQTDLEERKAQKATLEEEVASLKRDLKKFTSRETEVRAHVSSARQKA  240
             +  +   +  L  ++ +LE+++ +    E E+   +  LK+    + + +  +  +RQK 
Sbjct  436   EESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKL  495

Query  241   EEARASLASTQNRGSVLAGLMRLKESGRIDGFHGRLGNLGTIDEKYDVAISTACPALDNM  300
             EE     +  ++   VL  L++    GRI   HGRLG+LG   E Y VAISTA     + 
Sbjct  496   EERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA  555

Query  301   VVDTVEVGQQCIDYLRKNNLGRANFILLDRLPRRDMSPIFTPESVPRLFDLVKPKDPKFA  360
               D VE  Q+ +  L +  LG     LL    +  +  I   E  P L            
Sbjct  556   TADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILN-----------  604

Query  361   PAFYSVMQNTLVAKDLEQANRIAYGARRWRVVTLDGQLIDVSGTMSGGGTRVARGGMSSK  420
                            L Q ++    A          + I     ++             +
Sbjct  605   ---------------LAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLR  649

Query  421   QVAEVSREQVSKLESDLEEMERKFQNFQNKQKHVEAAIREKSEEIPRVETKIQKIMIEIE  480
             +   +      K E      E   +  + ++   +A      EEI R + +I+K     +
Sbjct  650   KGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREK  709

Query  481   SANRSLADAQRRVKELSVAHKPSKADANQAEQLEAQIAALEEEIEDLRAQKGGIEEEIQT  540
                + L      +    V     K +       +      EEE +    ++   EE+ + 
Sbjct  710   EELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSEL  769

Query  541   LQNKIMEVGGVRLRSQKAKVDGLKEQISLLAEEISNAEIGKSKNEKLIMKHQKAR--AEA  598
                +           +    +  +E++    EE+   E    +  +L+ + Q      E 
Sbjct  770   SLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEK  829

Query  599   ERELEQVAEGLEKLNADVENQANDASGWKQGVEEAQEALETKKGELKTLKQELDEKVAEL  658
              +E E     LE        +  +    ++  EE  +    ++  LK  + E  +   EL
Sbjct  830   IKEEELEELALELKEEQKLEKLAEEEL-ERLEEEITKEELLQELLLKEEELEEQKLKDEL  888

Query  659   NETRATEIEMRNKLEENQKALTENEKRQRYWSEKLSKLTLQNVSDLGEEQQPTELQMYTK  718
                   E E + +LEE  + L   E+++    E++ +     +    E ++    +   K
Sbjct  889   ESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEK  948

Query  719   DELSEMNKESLKAVIAALEEKTQNASVDLSVIEEYRRRAAEYESRAADLATALASRDSAK  778
             ++     +E  +     L  K +   V+L  IEE+  +   Y     +       +    
Sbjct  949   EKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLI  1008

Query  779   ARLDGLRSARLNGFMEGFGIISLRLKEMYQMITMGGNAELELVDSLDPFSEGILFSVMPP  838
               +      RL  F+E F  I+    +++  + +GG+AEL L D  DPFS GI  S  PP
Sbjct  1009  RAIIEETCQRLKEFLELFVSINKGWNKVFFYLELGGSAELRLEDPDDPFSGGIEISARPP  1068

Query  839   KKSWKNIGNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVASYIRERT  898
              K  KN+  LSGGEKTL +LAL+FA+  YKP P Y++DEIDAALD +NVS VA+ ++E +
Sbjct  1069  GKGVKNLDLLSGGEKTLVALALIFAIQKYKPAPFYLLDEIDAALDDQNVSRVANLLKELS  1128

Query  899   KNAQFIVISLRNNMFELASRLVGVYKVSHMTKS  931
             KNAQFIVISLR  M E A +LVGV  V +   +
Sbjct  1129  KNAQFIVISLREEMLEKADKLVGVTMVENGVST  1161


>CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Domain.  This 
family represents the hinge region of the SMC (Structural 
Maintenance of Chromosomes) family of proteins. The hinge region 
is responsible for formation of the DNA interacting dimer. 
It is also possible that the precise structure of it is 
an essential determinant of the specificity of the DNA-protein 
interaction.
Length=116

 Score = 111 bits (281),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 65/117 (56%), Gaps = 3/117 (3%)

Query  269  IDGFHGRLGNLGTIDEKYDVAISTAC-PALDNMVVDTVEVGQQCIDYLRKNNLGRANFIL  327
            + G  GRL +L  +DE Y+ A+  A    L  +VVD  +  ++ I++L+KN LGRA F+ 
Sbjct  1    LKGVLGRLADLIEVDEGYEKAVEAALGGRLQAVVVDDEDDAKRAIEFLKKNKLGRATFLP  60

Query  328  LDRLPRRDMSPIFTPES-VPRLFDLVKPKDPKFAPAFYSVMQNTLVAKDLEQANRIA  383
            LDRL  R   P    +     L DLV+  D ++  A   ++ NTLV  DL++A  +A
Sbjct  61   LDRLKPRPRRPGADLKGGAGPLLDLVEY-DDEYRKALRYLLGNTLVVDDLDEALELA  116



Lambda      K        H        a         alpha
   0.310    0.126    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1199246972


Query= TCONS_00010358

Length=1172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. Thi...  330     6e-96
CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Doma...  113     4e-30


>CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain 
is found at the N-terminus of SMC proteins. The SMC (structural 
maintenance of chromosomes) superfamily proteins have 
ATP-binding domains at the N- and C-termini, and two extended 
coiled-coil domains separated by a hinge in the middle. The 
eukaryotic SMC proteins form two kind of heterodimers: the 
SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute 
an essential part of higher order complexes, which are 
involved in chromatin and DNA dynamics. This family also includes 
the RecF and RecN proteins that are involved in DNA 
metabolism and recombination.
Length=1161

 Score = 330 bits (848),  Expect = 6e-96, Method: Composition-based stats.
 Identities = 208/905 (23%), Positives = 357/905 (39%), Gaps = 38/905 (4%)

Query  239   ITHLVLTNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDSLLFVFGFRASK-MRQGKI  297
             +  + +  FKSYA K ++ PF   F+++VGPNGSGKSN++D++LFV G R++K +R  ++
Sbjct  2     LKRIEIEGFKSYA-KTVILPFSPGFTAIVGPNGSGKSNILDAILFVLGERSAKSLRSERL  60

Query  298   SALIHNSANFPNLPFCEVEVHFQEILDLPGGEHEVVPDSQLMISRKAFKNNTSKYYMNGK  357
             S LIH S +   +   EVE+ F             +   ++ I R+ ++   S+YY+NGK
Sbjct  61    SDLIH-SKSGAFVNSAEVEITFDN-----EDHELPIDKEEVSIRRRVYRGGDSEYYINGK  114

Query  358   ETNFTAVTTLLRERGIDLDHKRFLILQGEVESIAQMKPKAANEHEDGLLEYLEDIIGTSK  417
                   V  LL  +GI  +   FL+  G++E IA MKP+   E E+              
Sbjct  115   NVTKKEVAELLESQGISPEAYNFLVQGGKIEIIAMMKPERRLEIEEEAAGSRLKRKKKEA  174

Query  418   YKAPIEEAAAELEQLNEVCVEKNNRVQHVEKEKTALEDKKNKALAYIQDENELAQKQSAL  477
              K  IEE     E + ++   K   ++  E+ K ALE  + K    +++E  L      L
Sbjct  175   LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKL  234

Query  478   YQIYIDECADNIRVTQEAILQMQELLNMELEKHEGNESGIKELEKAYKRGMREYETMEKE  537
              +  ID   + +R  QE I   ++ +  E EK        KE EK  K    E + + KE
Sbjct  235   NEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKE  294

Query  538   LQGLMKEMAKYDKESVKFEEKKKFLLGKQKKLEKSMQAARLAASECESLVQKHTDDINKK  597
              + L  E+ K ++  V  EEK K    ++KK EK ++  +    E E  +++       +
Sbjct  295   EEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAE  354

Query  598   TAETAKLEEEMKAEEEELSTIREGLKGKTQGLSEQIAAKQKSLEPWDERINKKLSAIAVA  657
               E  +LE+  +  E+    +    K +++ LS     K++ LE   E   +    + +A
Sbjct  355   EEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELA  414

Query  658   QSELDILRERSNAGAVQLEEAQSKVTSIEETLATKQTDLEERKAQKATLEEEVASLKRDL  717
             +   D+L+E        LEE +  +   +  L  ++ +LE+++ +    E E      DL
Sbjct  415   RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE-LKKSEDL  473

Query  718   KKFTSRETEVRAHV-SSARQKAEEARASLASTQNRGSVLAGLMRLKESGRIDGFHGRLGN  776
              K T             +RQK EE     +  ++   VL  L++    GRI   HGRLG+
Sbjct  474   LKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGD  533

Query  777   LGTIDEKYDVAISTACPALDNMVVDTVEVGQQCIDYLRKNNLGRANFILLDRLPRRDMSP  836
             LG   E Y VAISTA     +   D VE  Q+ +  L +  LG     LL    +  +  
Sbjct  534   LGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKS  593

Query  837   IFTPESVPRLFDLVKPKDPKFAPAFYSVMQNTLVAKDLEQANRIAYGARRWRVVTLDGQL  896
             I   E  P L                           L Q ++    A          + 
Sbjct  594   IAVLEIDPILN--------------------------LAQLDKATLEADEDDKRAKVVEG  627

Query  897   IDVSGTMSGGGTRVARGGMSSKQVAEVSREQVSKLESDLEEMERKFQNFQNKQKHVEAAI  956
             I     ++             ++   +      K E      E   +  + ++   +A  
Sbjct  628   ILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAES  687

Query  957   REKSEEIPRVETKIQKIMIEIESANRSLADAQRRVKELSVAHKPSKADANQAEQLEAQIA  1016
                 EEI R + +I+K     +   + L      +    V     K +       +    
Sbjct  688   ELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDE  747

Query  1017  ALEEEIEDLRAQKGGIEEEIQTLQNKIMEVGGVRLRSQKAKVDGLKEQISLLAEEISNAE  1076
               EEE +    ++   EE+ +    +           +    +  +E++    EE+   E
Sbjct  748   EEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALE  807

Query  1077  IGKSKNEKLIMKHQKAR--AEAERELEQVAEGLEKLNADVENQANDASGWKQGVEEAQEV  1134
                 +  +L+ + Q      E  +E E     LE        +  +    +   E  +E 
Sbjct  808   EELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE  867

Query  1135  RVQQS  1139
              +Q+ 
Sbjct  868   LLQEL  872


>CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Domain.  This 
family represents the hinge region of the SMC (Structural 
Maintenance of Chromosomes) family of proteins. The hinge region 
is responsible for formation of the DNA interacting dimer. 
It is also possible that the precise structure of it is 
an essential determinant of the specificity of the DNA-protein 
interaction.
Length=116

 Score = 113 bits (286),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 65/117 (56%), Gaps = 3/117 (3%)

Query  767  IDGFHGRLGNLGTIDEKYDVAISTAC-PALDNMVVDTVEVGQQCIDYLRKNNLGRANFIL  825
            + G  GRL +L  +DE Y+ A+  A    L  +VVD  +  ++ I++L+KN LGRA F+ 
Sbjct  1    LKGVLGRLADLIEVDEGYEKAVEAALGGRLQAVVVDDEDDAKRAIEFLKKNKLGRATFLP  60

Query  826  LDRLPRRDMSPIFTPES-VPRLFDLVKPKDPKFAPAFYSVMQNTLVAKDLEQANRIA  881
            LDRL  R   P    +     L DLV+  D ++  A   ++ NTLV  DL++A  +A
Sbjct  61   LDRLKPRPRRPGADLKGGAGPLLDLVEY-DDEYRKALRYLLGNTLVVDDLDEALELA  116



Lambda      K        H        a         alpha
   0.309    0.126    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1500955850


Query= TCONS_00010356

Length=1424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. Thi...  517     3e-162
CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Doma...  113     5e-30 


>CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain 
is found at the N-terminus of SMC proteins. The SMC (structural 
maintenance of chromosomes) superfamily proteins have 
ATP-binding domains at the N- and C-termini, and two extended 
coiled-coil domains separated by a hinge in the middle. The 
eukaryotic SMC proteins form two kind of heterodimers: the 
SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute 
an essential part of higher order complexes, which are 
involved in chromatin and DNA dynamics. This family also includes 
the RecF and RecN proteins that are involved in DNA 
metabolism and recombination.
Length=1161

 Score = 517 bits (1334),  Expect = 3e-162, Method: Composition-based stats.
 Identities = 298/1177 (25%), Positives = 501/1177 (43%), Gaps = 37/1177 (3%)

Query  239   ITHLVLTNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDSLLFVFGFRASK-MRQGKI  297
             +  + +  FKSYA K ++ PF   F+++VGPNGSGKSN++D++LFV G R++K +R  ++
Sbjct  2     LKRIEIEGFKSYA-KTVILPFSPGFTAIVGPNGSGKSNILDAILFVLGERSAKSLRSERL  60

Query  298   SALIHNSANFPNLPFCEVEVHFQEILDLPGGEHEVVPDSQLMISRKAFKNNTSKYYMNGK  357
             S LIH S +   +   EVE+ F             +   ++ I R+ ++   S+YY+NGK
Sbjct  61    SDLIH-SKSGAFVNSAEVEITFDN-----EDHELPIDKEEVSIRRRVYRGGDSEYYINGK  114

Query  358   ETNFTAVTTLLRERGIDLDHKRFLILQGEVESIAQMKPKAANEHEDGLLEYLEDIIGTSK  417
                   V  LL  +GI  +   FL+  G++E IA MKP+   E E+              
Sbjct  115   NVTKKEVAELLESQGISPEAYNFLVQGGKIEIIAMMKPERRLEIEEEAAGSRLKRKKKEA  174

Query  418   YKAPIEEAAAELEQLNEVCVEKNNRVQHVEKEKTALEDKKNKALAYIQDENELAQKQSAL  477
              K  IEE     E + ++   K   ++  E+ K ALE  + K    +++E  L      L
Sbjct  175   LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKL  234

Query  478   YQIYIDECADNIRVTQEAILQMQELLNMELEKHEGNESGIKELEKAYKRGMREYETMEKE  537
              +  ID   + +R  QE I   ++ +  E EK        KE EK  K    E + + KE
Sbjct  235   NEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKE  294

Query  538   LQGLMKEMAKYDKESVKFEEKKKFLLGKQKKLEKSMQAARLAASECESLVQKHTDDINKK  597
              + L  E+ K ++  V  EEK K    ++KK EK ++  +    E E  +++       +
Sbjct  295   EEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAE  354

Query  598   TAETAKLEEEMKAEEEELSTIREGLKGKTQGLSEQIAAKQKSLEPWDERINKKLSAIAVA  657
               E  +LE+  +  E+    +    K +++ LS     K++ LE   E   +    + +A
Sbjct  355   EEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELA  414

Query  658   QSELDILRERSNAGAVQLEEAQSKVTSIEETLATKQTDLEERKAQKATLEEEVASLKRDL  717
             +   D+L+E        LEE +  +   +  L  ++ +LE+++ +    E E+   +  L
Sbjct  415   RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLL  474

Query  718   KKFTSRETEVRAHVSSARQKAEEARASLASTQNRGSVLAGLMRLKESGRIDGFHGRLGNL  777
             K+    + + +  +  +RQK EE     +  ++   VL  L++    GRI   HGRLG+L
Sbjct  475   KETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDL  534

Query  778   GTIDEKYDVAISTACPALDNMVVDTVEVGQQCIDYLRKNNLGRANFILLDRLPRRDMSPI  837
             G   E Y VAISTA     +   D VE  Q+ +  L +  LG     LL    +  +  I
Sbjct  535   GVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSI  594

Query  838   FTPESVPRLFDLVKPKDPKFAPAFYSVMQNTLVAKDLEQANRIAYGARRWRVVTLDGQLI  897
                E  P L                           L Q ++    A          + I
Sbjct  595   AVLEIDPILN--------------------------LAQLDKATLEADEDDKRAKVVEGI  628

Query  898   DVSGTMSGGGTRVARGGMSSKQVAEVSREQVSKLESDLEEMERKFQNFQNKQKHVEAAIR  957
                  ++             ++   +      K E      E   +  + ++   +A   
Sbjct  629   LKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESE  688

Query  958   EKSEEIPRVETKIQKIMIEIESANRSLADAQRRVKELSVAHKPSKADANQAEQLEAQIAA  1017
                EEI R + +I+K     +   + L      +    V     K +       +     
Sbjct  689   LAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEE  748

Query  1018  LEEEIEDLRAQKGGIEEEIQTLQNKIMEVGGVRLRSQKAKVDGLKEQISLLAEEISNAEI  1077
              EEE +    ++   EE+ +    +           +    +  +E++    EE+   E 
Sbjct  749   EEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEE  808

Query  1078  GKSKNEKLIMKHQKAR--AEAERELEQVAEGLEKLNADVENQANDASGWKQGVEEAQEAL  1135
                +  +L+ + Q      E  +E E     LE        +  +    ++  EE  +  
Sbjct  809   ELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEEL-ERLEEEITKEE  867

Query  1136  ETKKGELKTLKQELDEKVAELNETRATEIEMRNKLEENQKALTENEKRQRYWSEKLSKLT  1195
               ++  LK  + E  +   EL      E E + +LEE  + L   E+++    E++ +  
Sbjct  868   LLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEA  927

Query  1196  LQNVSDLGEEQQPTELQMYTKDELSEMNKESLKAVIAALEEKTQNASVDLSVIEEYRRRA  1255
                +    E ++    +   K++     +E  +     L  K +   V+L  IEE+  + 
Sbjct  928   EILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKE  987

Query  1256  AEYESRAADLATALASRDSAKARLDGLRSARLNGFMEGFGIISLRLKEMYQMITMGGNAE  1315
               Y     +       +      +      RL  F+E F  I+    +++  + +GG+AE
Sbjct  988   ERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGWNKVFFYLELGGSAE  1047

Query  1316  LELVDSLDPFSEGILFSVMPPKKSWKNIGNLSGGEKTLSSLALVFALHHYKPTPLYVMDE  1375
             L L D  DPFS GI  S  PP K  KN+  LSGGEKTL +LAL+FA+  YKP P Y++DE
Sbjct  1048  LRLEDPDDPFSGGIEISARPPGKGVKNLDLLSGGEKTLVALALIFAIQKYKPAPFYLLDE  1107

Query  1376  IDAALDFRNVSIVASYIRERTKNAQFIVISLRNNMVS  1412
             IDAALD +NVS VA+ ++E +KNAQFIVISLR  M+ 
Sbjct  1108  IDAALDDQNVSRVANLLKELSKNAQFIVISLREEMLE  1144


>CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Domain.  This 
family represents the hinge region of the SMC (Structural 
Maintenance of Chromosomes) family of proteins. The hinge region 
is responsible for formation of the DNA interacting dimer. 
It is also possible that the precise structure of it is 
an essential determinant of the specificity of the DNA-protein 
interaction.
Length=116

 Score = 113 bits (286),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 65/117 (56%), Gaps = 3/117 (3%)

Query  767  IDGFHGRLGNLGTIDEKYDVAISTAC-PALDNMVVDTVEVGQQCIDYLRKNNLGRANFIL  825
            + G  GRL +L  +DE Y+ A+  A    L  +VVD  +  ++ I++L+KN LGRA F+ 
Sbjct  1    LKGVLGRLADLIEVDEGYEKAVEAALGGRLQAVVVDDEDDAKRAIEFLKKNKLGRATFLP  60

Query  826  LDRLPRRDMSPIFTPES-VPRLFDLVKPKDPKFAPAFYSVMQNTLVAKDLEQANRIA  881
            LDRL  R   P    +     L DLV+  D ++  A   ++ NTLV  DL++A  +A
Sbjct  61   LDRLKPRPRRPGADLKGGAGPLLDLVEY-DDEYRKALRYLLGNTLVVDDLDEALELA  116



Lambda      K        H        a         alpha
   0.309    0.126    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1825371600


Query= TCONS_00010357

Length=1441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. Thi...  531     3e-167
CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Doma...  113     6e-30 


>CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain 
is found at the N-terminus of SMC proteins. The SMC (structural 
maintenance of chromosomes) superfamily proteins have 
ATP-binding domains at the N- and C-termini, and two extended 
coiled-coil domains separated by a hinge in the middle. The 
eukaryotic SMC proteins form two kind of heterodimers: the 
SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute 
an essential part of higher order complexes, which are 
involved in chromatin and DNA dynamics. This family also includes 
the RecF and RecN proteins that are involved in DNA 
metabolism and recombination.
Length=1161

 Score = 531 bits (1370),  Expect = 3e-167, Method: Composition-based stats.
 Identities = 305/1194 (26%), Positives = 510/1194 (43%), Gaps = 37/1194 (3%)

Query  239   ITHLVLTNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDSLLFVFGFRASK-MRQGKI  297
             +  + +  FKSYA K ++ PF   F+++VGPNGSGKSN++D++LFV G R++K +R  ++
Sbjct  2     LKRIEIEGFKSYA-KTVILPFSPGFTAIVGPNGSGKSNILDAILFVLGERSAKSLRSERL  60

Query  298   SALIHNSANFPNLPFCEVEVHFQEILDLPGGEHEVVPDSQLMISRKAFKNNTSKYYMNGK  357
             S LIH S +   +   EVE+ F             +   ++ I R+ ++   S+YY+NGK
Sbjct  61    SDLIH-SKSGAFVNSAEVEITFDN-----EDHELPIDKEEVSIRRRVYRGGDSEYYINGK  114

Query  358   ETNFTAVTTLLRERGIDLDHKRFLILQGEVESIAQMKPKAANEHEDGLLEYLEDIIGTSK  417
                   V  LL  +GI  +   FL+  G++E IA MKP+   E E+              
Sbjct  115   NVTKKEVAELLESQGISPEAYNFLVQGGKIEIIAMMKPERRLEIEEEAAGSRLKRKKKEA  174

Query  418   YKAPIEEAAAELEQLNEVCVEKNNRVQHVEKEKTALEDKKNKALAYIQDENELAQKQSAL  477
              K  IEE     E + ++   K   ++  E+ K ALE  + K    +++E  L      L
Sbjct  175   LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKL  234

Query  478   YQIYIDECADNIRVTQEAILQMQELLNMELEKHEGNESGIKELEKAYKRGMREYETMEKE  537
              +  ID   + +R  QE I   ++ +  E EK        KE EK  K    E + + KE
Sbjct  235   NEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKE  294

Query  538   LQGLMKEMAKYDKESVKFEEKKKFLLGKQKKLEKSMQAARLAASECESLVQKHTDDINKK  597
              + L  E+ K ++  V  EEK K    ++KK EK ++  +    E E  +++       +
Sbjct  295   EEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAE  354

Query  598   TAETAKLEEEMKAEEEELSTIREGLKGKTQGLSEQIAAKQKSLEPWDERINKKLSAIAVA  657
               E  +LE+  +  E+    +    K +++ LS     K++ LE   E   +    + +A
Sbjct  355   EEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELA  414

Query  658   QSELDILRERSNAGAVQLEEAQSKVTSIEETLATKQTDLEERKAQKATLEEEVASLKRDL  717
             +   D+L+E        LEE +  +   +  L  ++ +LE+++ +    E E+   +  L
Sbjct  415   RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLL  474

Query  718   KKFTSRETEVRAHVSSARQKAEEARASLASTQNRGSVLAGLMRLKESGRIDGFHGRLGNL  777
             K+    + + +  +  +RQK EE     +  ++   VL  L++    GRI   HGRLG+L
Sbjct  475   KETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDL  534

Query  778   GTIDEKYDVAISTACPALDNMVVDTVEVGQQCIDYLRKNNLGRANFILLDRLPRRDMSPI  837
             G   E Y VAISTA     +   D VE  Q+ +  L +  LG     LL    +  +  I
Sbjct  535   GVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSI  594

Query  838   FTPESVPRLFDLVKPKDPKFAPAFYSVMQNTLVAKDLEQANRIAYGARRWRVVTLDGQLI  897
                E  P L                           L Q ++    A          + I
Sbjct  595   AVLEIDPILN--------------------------LAQLDKATLEADEDDKRAKVVEGI  628

Query  898   DVSGTMSGGGTRVARGGMSSKQVAEVSREQVSKLESDLEEMERKFQNFQNKQKHVEAAIR  957
                  ++             ++   +      K E      E   +  + ++   +A   
Sbjct  629   LKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESE  688

Query  958   EKSEEIPRVETKIQKIMIEIESANRSLADAQRRVKELSVAHKPSKADANQAEQLEAQIAA  1017
                EEI R + +I+K     +   + L      +    V     K +       +     
Sbjct  689   LAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEE  748

Query  1018  LEEEIEDLRAQKGGIEEEIQTLQNKIMEVGGVRLRSQKAKVDGLKEQISLLAEEISNAEI  1077
              EEE +    ++   EE+ +    +           +    +  +E++    EE+   E 
Sbjct  749   EEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEE  808

Query  1078  GKSKNEKLIMKHQKAR--AEAERELEQVAEGLEKLNADVENQANDASGWKQGVEEAQEAL  1135
                +  +L+ + Q      E  +E E     LE        +  +    ++  EE  +  
Sbjct  809   ELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEEL-ERLEEEITKEE  867

Query  1136  ETKKGELKTLKQELDEKVAELNETRATEIEMRNKLEENQKALTENEKRQRYWSEKLSKLT  1195
               ++  LK  + E  +   EL      E E + +LEE  + L   E+++    E++ +  
Sbjct  868   LLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEA  927

Query  1196  LQNVSDLGEEQQPTELQMYTKDELSEMNKESLKAVIAALEEKTQNASVDLSVIEEYRRRA  1255
                +    E ++    +   K++     +E  +     L  K +   V+L  IEE+  + 
Sbjct  928   EILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKE  987

Query  1256  AEYESRAADLATALASRDSAKARLDGLRSARLNGFMEGFGIISLRLKEMYQMITMGGNAE  1315
               Y     +       +      +      RL  F+E F  I+    +++  + +GG+AE
Sbjct  988   ERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGWNKVFFYLELGGSAE  1047

Query  1316  LELVDSLDPFSEGILFSVMPPKKSWKNIGNLSGGEKTLSSLALVFALHHYKPTPLYVMDE  1375
             L L D  DPFS GI  S  PP K  KN+  LSGGEKTL +LAL+FA+  YKP P Y++DE
Sbjct  1048  LRLEDPDDPFSGGIEISARPPGKGVKNLDLLSGGEKTLVALALIFAIQKYKPAPFYLLDE  1107

Query  1376  IDAALDFRNVSIVASYIRERTKNAQFIVISLRNNMFELASRLVGVYKVSHMTKS  1429
             IDAALD +NVS VA+ ++E +KNAQFIVISLR  M E A +LVGV  V +   +
Sbjct  1108  IDAALDDQNVSRVANLLKELSKNAQFIVISLREEMLEKADKLVGVTMVENGVST  1161


>CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Domain.  This 
family represents the hinge region of the SMC (Structural 
Maintenance of Chromosomes) family of proteins. The hinge region 
is responsible for formation of the DNA interacting dimer. 
It is also possible that the precise structure of it is 
an essential determinant of the specificity of the DNA-protein 
interaction.
Length=116

 Score = 113 bits (285),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 65/117 (56%), Gaps = 3/117 (3%)

Query  767  IDGFHGRLGNLGTIDEKYDVAISTAC-PALDNMVVDTVEVGQQCIDYLRKNNLGRANFIL  825
            + G  GRL +L  +DE Y+ A+  A    L  +VVD  +  ++ I++L+KN LGRA F+ 
Sbjct  1    LKGVLGRLADLIEVDEGYEKAVEAALGGRLQAVVVDDEDDAKRAIEFLKKNKLGRATFLP  60

Query  826  LDRLPRRDMSPIFTPES-VPRLFDLVKPKDPKFAPAFYSVMQNTLVAKDLEQANRIA  881
            LDRL  R   P    +     L DLV+  D ++  A   ++ NTLV  DL++A  +A
Sbjct  61   LDRLKPRPRRPGADLKGGAGPLLDLVEY-DDEYRKALRYLLGNTLVVDDLDEALELA  116



Lambda      K        H        a         alpha
   0.309    0.126    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1821043004


Query= TCONS_00017095

Length=1172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. Thi...  330     6e-96
CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Doma...  113     4e-30


>CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain 
is found at the N-terminus of SMC proteins. The SMC (structural 
maintenance of chromosomes) superfamily proteins have 
ATP-binding domains at the N- and C-termini, and two extended 
coiled-coil domains separated by a hinge in the middle. The 
eukaryotic SMC proteins form two kind of heterodimers: the 
SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute 
an essential part of higher order complexes, which are 
involved in chromatin and DNA dynamics. This family also includes 
the RecF and RecN proteins that are involved in DNA 
metabolism and recombination.
Length=1161

 Score = 330 bits (848),  Expect = 6e-96, Method: Composition-based stats.
 Identities = 208/905 (23%), Positives = 357/905 (39%), Gaps = 38/905 (4%)

Query  239   ITHLVLTNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDSLLFVFGFRASK-MRQGKI  297
             +  + +  FKSYA K ++ PF   F+++VGPNGSGKSN++D++LFV G R++K +R  ++
Sbjct  2     LKRIEIEGFKSYA-KTVILPFSPGFTAIVGPNGSGKSNILDAILFVLGERSAKSLRSERL  60

Query  298   SALIHNSANFPNLPFCEVEVHFQEILDLPGGEHEVVPDSQLMISRKAFKNNTSKYYMNGK  357
             S LIH S +   +   EVE+ F             +   ++ I R+ ++   S+YY+NGK
Sbjct  61    SDLIH-SKSGAFVNSAEVEITFDN-----EDHELPIDKEEVSIRRRVYRGGDSEYYINGK  114

Query  358   ETNFTAVTTLLRERGIDLDHKRFLILQGEVESIAQMKPKAANEHEDGLLEYLEDIIGTSK  417
                   V  LL  +GI  +   FL+  G++E IA MKP+   E E+              
Sbjct  115   NVTKKEVAELLESQGISPEAYNFLVQGGKIEIIAMMKPERRLEIEEEAAGSRLKRKKKEA  174

Query  418   YKAPIEEAAAELEQLNEVCVEKNNRVQHVEKEKTALEDKKNKALAYIQDENELAQKQSAL  477
              K  IEE     E + ++   K   ++  E+ K ALE  + K    +++E  L      L
Sbjct  175   LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKL  234

Query  478   YQIYIDECADNIRVTQEAILQMQELLNMELEKHEGNESGIKELEKAYKRGMREYETMEKE  537
              +  ID   + +R  QE I   ++ +  E EK        KE EK  K    E + + KE
Sbjct  235   NEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKE  294

Query  538   LQGLMKEMAKYDKESVKFEEKKKFLLGKQKKLEKSMQAARLAASECESLVQKHTDDINKK  597
              + L  E+ K ++  V  EEK K    ++KK EK ++  +    E E  +++       +
Sbjct  295   EEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAE  354

Query  598   TAETAKLEEEMKAEEEELSTIREGLKGKTQGLSEQIAAKQKSLEPWDERINKKLSAIAVA  657
               E  +LE+  +  E+    +    K +++ LS     K++ LE   E   +    + +A
Sbjct  355   EEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELA  414

Query  658   QSELDILRERSNAGAVQLEEAQSKVTSIEETLATKQTDLEERKAQKATLEEEVASLKRDL  717
             +   D+L+E        LEE +  +   +  L  ++ +LE+++ +    E E      DL
Sbjct  415   RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE-LKKSEDL  473

Query  718   KKFTSRETEVRAHV-SSARQKAEEARASLASTQNRGSVLAGLMRLKESGRIDGFHGRLGN  776
              K T             +RQK EE     +  ++   VL  L++    GRI   HGRLG+
Sbjct  474   LKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGD  533

Query  777   LGTIDEKYDVAISTACPALDNMVVDTVEVGQQCIDYLRKNNLGRANFILLDRLPRRDMSP  836
             LG   E Y VAISTA     +   D VE  Q+ +  L +  LG     LL    +  +  
Sbjct  534   LGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKS  593

Query  837   IFTPESVPRLFDLVKPKDPKFAPAFYSVMQNTLVAKDLEQANRIAYGARRWRVVTLDGQL  896
             I   E  P L                           L Q ++    A          + 
Sbjct  594   IAVLEIDPILN--------------------------LAQLDKATLEADEDDKRAKVVEG  627

Query  897   IDVSGTMSGGGTRVARGGMSSKQVAEVSREQVSKLESDLEEMERKFQNFQNKQKHVEAAI  956
             I     ++             ++   +      K E      E   +  + ++   +A  
Sbjct  628   ILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAES  687

Query  957   REKSEEIPRVETKIQKIMIEIESANRSLADAQRRVKELSVAHKPSKADANQAEQLEAQIA  1016
                 EEI R + +I+K     +   + L      +    V     K +       +    
Sbjct  688   ELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDE  747

Query  1017  ALEEEIEDLRAQKGGIEEEIQTLQNKIMEVGGVRLRSQKAKVDGLKEQISLLAEEISNAE  1076
               EEE +    ++   EE+ +    +           +    +  +E++    EE+   E
Sbjct  748   EEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALE  807

Query  1077  IGKSKNEKLIMKHQKAR--AEAERELEQVAEGLEKLNADVENQANDASGWKQGVEEAQEV  1134
                 +  +L+ + Q      E  +E E     LE        +  +    +   E  +E 
Sbjct  808   EELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE  867

Query  1135  RVQQS  1139
              +Q+ 
Sbjct  868   LLQEL  872


>CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Domain.  This 
family represents the hinge region of the SMC (Structural 
Maintenance of Chromosomes) family of proteins. The hinge region 
is responsible for formation of the DNA interacting dimer. 
It is also possible that the precise structure of it is 
an essential determinant of the specificity of the DNA-protein 
interaction.
Length=116

 Score = 113 bits (286),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 65/117 (56%), Gaps = 3/117 (3%)

Query  767  IDGFHGRLGNLGTIDEKYDVAISTAC-PALDNMVVDTVEVGQQCIDYLRKNNLGRANFIL  825
            + G  GRL +L  +DE Y+ A+  A    L  +VVD  +  ++ I++L+KN LGRA F+ 
Sbjct  1    LKGVLGRLADLIEVDEGYEKAVEAALGGRLQAVVVDDEDDAKRAIEFLKKNKLGRATFLP  60

Query  826  LDRLPRRDMSPIFTPES-VPRLFDLVKPKDPKFAPAFYSVMQNTLVAKDLEQANRIA  881
            LDRL  R   P    +     L DLV+  D ++  A   ++ NTLV  DL++A  +A
Sbjct  61   LDRLKPRPRRPGADLKGGAGPLLDLVEY-DDEYRKALRYLLGNTLVVDDLDEALELA  116



Lambda      K        H        a         alpha
   0.309    0.126    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1500955850


Query= TCONS_00010361

Length=1088
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. Thi...  385     3e-116
CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Doma...  111     2e-29 


>CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain 
is found at the N-terminus of SMC proteins. The SMC (structural 
maintenance of chromosomes) superfamily proteins have 
ATP-binding domains at the N- and C-termini, and two extended 
coiled-coil domains separated by a hinge in the middle. The 
eukaryotic SMC proteins form two kind of heterodimers: the 
SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute 
an essential part of higher order complexes, which are 
involved in chromatin and DNA dynamics. This family also includes 
the RecF and RecN proteins that are involved in DNA 
metabolism and recombination.
Length=1161

 Score = 385 bits (990),  Expect = 3e-116, Method: Composition-based stats.
 Identities = 264/1077 (25%), Positives = 441/1077 (41%), Gaps = 29/1077 (3%)

Query  2     NGKETNFTAVTTLLRERGIDLDHKRFLILQGEVESIAQMKPKAANEHEDGLLEYLEDIIG  61
             NGK      V  LL  +GI  +   FL+  G++E IA MKP+   E E+           
Sbjct  112   NGKNVTKKEVAELLESQGISPEAYNFLVQGGKIEIIAMMKPERRLEIEEEAAGSRLKRKK  171

Query  62    TSKYKAPIEEAAAELEQLNEVCVEKNNRVQHVEKEKTALEDKKNKALAYIQDENELAQKQ  121
                 K  IEE     E + ++   K   ++  E+ K ALE  + K    +++E  L    
Sbjct  172   KEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDY  231

Query  122   SALYQIYIDECADNIRVTQEAILQMQELLNMELEKHEGNESGIKELEKAYKRGMREYETM  181
               L +  ID   + +R  QE I   ++ +  E EK        KE EK  K    E + +
Sbjct  232   LKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLL  291

Query  182   EKELQGLMKEMAKYDKESVKFEEKKKFLLGKQKKLEKSMQAARLAASECESLVQKHTDDI  241
              KE + L  E+ K ++  V  EEK K    ++KK EK ++  +    E E  +++     
Sbjct  292   AKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKR  351

Query  242   NKKTAETAKLEEEMKAEEEELSTIREGLKGKTQGLSEQIAAKQKSLEPWDERINKKLSAI  301
               +  E  +LE+  +  E+    +    K +++ LS     K++ LE   E   +    +
Sbjct  352   EAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLL  411

Query  302   AVAQSELDILRERSNAGAVQLEEAQSKVTSIEETLATKQTDLEERKAQKATLEEEVASLK  361
              +A+   D+L+E        LEE +  +   +  L  ++ +LE+++ +    E E+   +
Sbjct  412   ELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE  471

Query  362   RDLKKFTSRETEVRAHVSSARQKAEEARASLASTQNRGSVLAGLMRLKESGRIDGFHGRL  421
               LK+    + + +  +  +RQK EE     +  ++   VL  L++    GRI   HGRL
Sbjct  472   DLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRL  531

Query  422   GNLGTIDEKYDVAISTACPALDNMVVDTVEVGQQCIDYLRKNNLGRANFILLDRLPRRDM  481
             G+LG   E Y VAISTA     +   D VE  Q+ +  L +  LG     LL    +  +
Sbjct  532   GDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPL  591

Query  482   SPIFTPESVPRLFDLVKPKDPKFAPAFYSVMQNTLVAKDLEQANRIAYGARRWRVVTLDG  541
               I   E  P L                           L Q ++    A          
Sbjct  592   KSIAVLEIDPILN--------------------------LAQLDKATLEADEDDKRAKVV  625

Query  542   QLIDVSGTMSGGGTRVARGGMSSKQVAEVSREQVSKLESDLEEMERKFQNFQNKQKHVEA  601
             + I     ++             ++   +      K E      E   +  + ++   +A
Sbjct  626   EGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKA  685

Query  602   AIREKSEEIPRVETKIQKIMIEIESANRSLADAQRRVKELSVAHKPSKADANQAEQLEAQ  661
                   EEI R + +I+K     +   + L      +    V     K +       +  
Sbjct  686   ESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKI  745

Query  662   IAALEEEIEDLRAQKGGIEEEIQTLQNKIMEVGGVRLRSQKAKVDGLKEQISLLAEEISN  721
                 EEE +    ++   EE+ +    +           +    +  +E++    EE+  
Sbjct  746   DEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRA  805

Query  722   AEIGKSKNEKLIMKHQKAR--AEAERELEQVAEGLEKLNADVENQANDASGWKQGVEEAQ  779
              E    +  +L+ + Q      E  +E E     LE        +  +    ++  EE  
Sbjct  806   LEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEEL-ERLEEEIT  864

Query  780   EALETKKGELKTLKQELDEKVAELNETRATEIEMRNKLEENQKALTENEKRQRYWSEKLS  839
             +    ++  LK  + E  +   EL      E E + +LEE  + L   E+++    E++ 
Sbjct  865   KEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIK  924

Query  840   KLTLQNVSDLGEEQQPTELQMYTKDELSEMNKESLKAVIAALEEKTQNASVDLSVIEEYR  899
             +     +    E ++    +   K++     +E  +     L  K +   V+L  IEE+ 
Sbjct  925   EEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFE  984

Query  900   RRAAEYESRAADLATALASRDSAKARLDGLRSARLNGFMEGFGIISLRLKEMYQMITMGG  959
              +   Y     +       +      +      RL  F+E F  I+    +++  + +GG
Sbjct  985   EKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGWNKVFFYLELGG  1044

Query  960   NAELELVDSLDPFSEGILFSVMPPKKSWKNIGNLSGGEKTLSSLALVFALHHYKPTPLYV  1019
             +AEL L D  DPFS GI  S  PP K  KN+  LSGGEKTL +LAL+FA+  YKP P Y+
Sbjct  1045  SAELRLEDPDDPFSGGIEISARPPGKGVKNLDLLSGGEKTLVALALIFAIQKYKPAPFYL  1104

Query  1020  MDEIDAALDFRNVSIVASYIRERTKNAQFIVISLRNNMFELASRLVGVYKVSHMTKS  1076
             +DEIDAALD +NVS VA+ ++E +KNAQFIVISLR  M E A +LVGV  V +   +
Sbjct  1105  LDEIDAALDDQNVSRVANLLKELSKNAQFIVISLREEMLEKADKLVGVTMVENGVST  1161


>CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Domain.  This 
family represents the hinge region of the SMC (Structural 
Maintenance of Chromosomes) family of proteins. The hinge region 
is responsible for formation of the DNA interacting dimer. 
It is also possible that the precise structure of it is 
an essential determinant of the specificity of the DNA-protein 
interaction.
Length=116

 Score = 111 bits (280),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 65/117 (56%), Gaps = 3/117 (3%)

Query  414  IDGFHGRLGNLGTIDEKYDVAISTAC-PALDNMVVDTVEVGQQCIDYLRKNNLGRANFIL  472
            + G  GRL +L  +DE Y+ A+  A    L  +VVD  +  ++ I++L+KN LGRA F+ 
Sbjct  1    LKGVLGRLADLIEVDEGYEKAVEAALGGRLQAVVVDDEDDAKRAIEFLKKNKLGRATFLP  60

Query  473  LDRLPRRDMSPIFTPES-VPRLFDLVKPKDPKFAPAFYSVMQNTLVAKDLEQANRIA  528
            LDRL  R   P    +     L DLV+  D ++  A   ++ NTLV  DL++A  +A
Sbjct  61   LDRLKPRPRRPGADLKGGAGPLLDLVEY-DDEYRKALRYLLGNTLVVDDLDEALELA  116



Lambda      K        H        a         alpha
   0.310    0.126    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0612    0.140     1.90     42.6     43.6 

Effective search space used: 1383671858


Query= TCONS_00010362

Length=1229
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. Thi...  510     2e-161
CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Doma...  112     1e-29 


>CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain 
is found at the N-terminus of SMC proteins. The SMC (structural 
maintenance of chromosomes) superfamily proteins have 
ATP-binding domains at the N- and C-termini, and two extended 
coiled-coil domains separated by a hinge in the middle. The 
eukaryotic SMC proteins form two kind of heterodimers: the 
SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute 
an essential part of higher order complexes, which are 
involved in chromatin and DNA dynamics. This family also includes 
the RecF and RecN proteins that are involved in DNA 
metabolism and recombination.
Length=1161

 Score = 510 bits (1315),  Expect = 2e-161, Method: Composition-based stats.
 Identities = 305/1194 (26%), Positives = 510/1194 (43%), Gaps = 37/1194 (3%)

Query  27    ITHLVLTNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDSLLFVFGFRASK-MRQGKI  85
             +  + +  FKSYA K ++ PF   F+++VGPNGSGKSN++D++LFV G R++K +R  ++
Sbjct  2     LKRIEIEGFKSYA-KTVILPFSPGFTAIVGPNGSGKSNILDAILFVLGERSAKSLRSERL  60

Query  86    SALIHNSANFPNLPFCEVEVHFQEILDLPGGEHEVVPDSQLMISRKAFKNNTSKYYMNGK  145
             S LIH S +   +   EVE+ F             +   ++ I R+ ++   S+YY+NGK
Sbjct  61    SDLIH-SKSGAFVNSAEVEITFDN-----EDHELPIDKEEVSIRRRVYRGGDSEYYINGK  114

Query  146   ETNFTAVTTLLRERGIDLDHKRFLILQGEVESIAQMKPKAANEHEDGLLEYLEDIIGTSK  205
                   V  LL  +GI  +   FL+  G++E IA MKP+   E E+              
Sbjct  115   NVTKKEVAELLESQGISPEAYNFLVQGGKIEIIAMMKPERRLEIEEEAAGSRLKRKKKEA  174

Query  206   YKAPIEEAAAELEQLNEVCVEKNNRVQHVEKEKTALEDKKNKALAYIQDENELAQKQSAL  265
              K  IEE     E + ++   K   ++  E+ K ALE  + K    +++E  L      L
Sbjct  175   LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKL  234

Query  266   YQIYIDECADNIRVTQEAILQMQELLNMELEKHEGNESGIKELEKAYKRGMREYETMEKE  325
              +  ID   + +R  QE I   ++ +  E EK        KE EK  K    E + + KE
Sbjct  235   NEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKE  294

Query  326   LQGLMKEMAKYDKESVKFEEKKKFLLGKQKKLEKSMQAARLAASECESLVQKHTDDINKK  385
              + L  E+ K ++  V  EEK K    ++KK EK ++  +    E E  +++       +
Sbjct  295   EEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAE  354

Query  386   TAETAKLEEEMKAEEEELSTIREGLKGKTQGLSEQIAAKQKSLEPWDERINKKLSAIAVA  445
               E  +LE+  +  E+    +    K +++ LS     K++ LE   E   +    + +A
Sbjct  355   EEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELA  414

Query  446   QSELDILRERSNAGAVQLEEAQSKVTSIEETLATKQTDLEERKAQKATLEEEVASLKRDL  505
             +   D+L+E        LEE +  +   +  L  ++ +LE+++ +    E E+   +  L
Sbjct  415   RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLL  474

Query  506   KKFTSRETEVRAHVSSARQKAEEARASLASTQNRGSVLAGLMRLKESGRIDGFHGRLGNL  565
             K+    + + +  +  +RQK EE     +  ++   VL  L++    GRI   HGRLG+L
Sbjct  475   KETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDL  534

Query  566   GTIDEKYDVAISTACPALDNMVVDTVEVGQQCIDYLRKNNLGRANFILLDRLPRRDMSPI  625
             G   E Y VAISTA     +   D VE  Q+ +  L +  LG     LL    +  +  I
Sbjct  535   GVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSI  594

Query  626   FTPESVPRLFDLVKPKDPKFAPAFYSVMQNTLVAKDLEQANRIAYGARRWRVVTLDGQLI  685
                E  P L                           L Q ++    A          + I
Sbjct  595   AVLEIDPILN--------------------------LAQLDKATLEADEDDKRAKVVEGI  628

Query  686   DVSGTMSGGGTRVARGGMSSKQVAEVSREQVSKLESDLEEMERKFQNFQNKQKHVEAAIR  745
                  ++             ++   +      K E      E   +  + ++   +A   
Sbjct  629   LKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESE  688

Query  746   EKSEEIPRVETKIQKIMIEIESANRSLADAQRRVKELSVAHKPSKADANQAEQLEAQIAA  805
                EEI R + +I+K     +   + L      +    V     K +       +     
Sbjct  689   LAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEE  748

Query  806   LEEEIEDLRAQKGGIEEEIQTLQNKIMEVGGVRLRSQKAKVDGLKEQISLLAEEISNAEI  865
              EEE +    ++   EE+ +    +           +    +  +E++    EE+   E 
Sbjct  749   EEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEE  808

Query  866   GKSKNEKLIMKHQKAR--AEAERELEQVAEGLEKLNADVENQANDASGWKQGVEEAQEAL  923
                +  +L+ + Q      E  +E E     LE        +  +    ++  EE  +  
Sbjct  809   ELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEEL-ERLEEEITKEE  867

Query  924   ETKKGELKTLKQELDEKVAELNETRATEIEMRNKLEENQKALTENEKRQRYWSEKLSKLT  983
               ++  LK  + E  +   EL      E E + +LEE  + L   E+++    E++ +  
Sbjct  868   LLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEA  927

Query  984   LQNVSDLGEEQQPTELQMYTKDELSEMNKESLKAVIAALEEKTQNASVDLSVIEEYRRRA  1043
                +    E ++    +   K++     +E  +     L  K +   V+L  IEE+  + 
Sbjct  928   EILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKE  987

Query  1044  AEYESRAADLATALASRDSAKARLDGLRSARLNGFMEGFGIISLRLKEMYQMITMGGNAE  1103
               Y     +       +      +      RL  F+E F  I+    +++  + +GG+AE
Sbjct  988   ERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGWNKVFFYLELGGSAE  1047

Query  1104  LELVDSLDPFSEGILFSVMPPKKSWKNIGNLSGGEKTLSSLALVFALHHYKPTPLYVMDE  1163
             L L D  DPFS GI  S  PP K  KN+  LSGGEKTL +LAL+FA+  YKP P Y++DE
Sbjct  1048  LRLEDPDDPFSGGIEISARPPGKGVKNLDLLSGGEKTLVALALIFAIQKYKPAPFYLLDE  1107

Query  1164  IDAALDFRNVSIVASYIRERTKNAQFIVISLRNNMFELASRLVGVYKVSHMTKS  1217
             IDAALD +NVS VA+ ++E +KNAQFIVISLR  M E A +LVGV  V +   +
Sbjct  1108  IDAALDDQNVSRVANLLKELSKNAQFIVISLREEMLEKADKLVGVTMVENGVST  1161


>CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Domain.  This 
family represents the hinge region of the SMC (Structural 
Maintenance of Chromosomes) family of proteins. The hinge region 
is responsible for formation of the DNA interacting dimer. 
It is also possible that the precise structure of it is 
an essential determinant of the specificity of the DNA-protein 
interaction.
Length=116

 Score = 112 bits (282),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 65/117 (56%), Gaps = 3/117 (3%)

Query  555  IDGFHGRLGNLGTIDEKYDVAISTAC-PALDNMVVDTVEVGQQCIDYLRKNNLGRANFIL  613
            + G  GRL +L  +DE Y+ A+  A    L  +VVD  +  ++ I++L+KN LGRA F+ 
Sbjct  1    LKGVLGRLADLIEVDEGYEKAVEAALGGRLQAVVVDDEDDAKRAIEFLKKNKLGRATFLP  60

Query  614  LDRLPRRDMSPIFTPES-VPRLFDLVKPKDPKFAPAFYSVMQNTLVAKDLEQANRIA  669
            LDRL  R   P    +     L DLV+  D ++  A   ++ NTLV  DL++A  +A
Sbjct  61   LDRLKPRPRRPGADLKGGAGPLLDLVEY-DDEYRKALRYLLGNTLVVDDLDEALELA  116



Lambda      K        H        a         alpha
   0.311    0.128    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1580541416


Query= TCONS_00010363

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00010364

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00017096

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00010365

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00010367

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00010368

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406878 pfam16575, CLP1_P, mRNA cleavage and polyadenylation f...  64.6    1e-12


>CDD:406878 pfam16575, CLP1_P, mRNA cleavage and polyadenylation factor CLP1 
P-loop.  CLP1_P is the P-loop carrying domain of Clp1 mRNA 
cleavage and polyadenylation factor, Clp1, proteins in eukaryotes. 
Clp1 is essential for 3'-end processing of mRNAs. 
This region carries the P-loop suggesting it is the region that 
binds adenine or guanine nucleotide.
Length=187

 Score = 64.6 bits (158),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 62/156 (40%), Gaps = 16/156 (10%)

Query  12   PFFGPPFT-----HPSLAESQDGSIIR---SHHIGAISPKEDPDHYVLAAMDLMDRYRAL  63
               GPP T          +  +G  +     +  G  SP  +PD Y+    +L     + 
Sbjct  35   SEIGPPGTISLALVERPIDVPEGFSLDAPLVYFFGHTSPSGNPDLYLALVKELARVIESR  94

Query  64   LASYPQC---PLIINYPGWIFGLGLEVATWLVKSLGLSDVVYMSEKGPAEVVEPLGHAAQ  120
            L +  +     +IIN PGWI GLG E+   ++++     V+ +       +   L     
Sbjct  95   LEANKKAKASGVIINTPGWIKGLGYELLLHIIEAFEPDVVIVL---DQERLYNELKRDLP  151

Query  121  EARVPLTTLPSQPTDFV-SRSS-AQLRSMQVQSYFH  154
             ++V +  LP        SR    +LR  +++ YF+
Sbjct  152  LSKVKVVKLPKSGGVVSRSREERRELREERIREYFY  187



Lambda      K        H        a         alpha
   0.316    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00010369

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406878 pfam16575, CLP1_P, mRNA cleavage and polyadenylation f...  64.6    1e-12


>CDD:406878 pfam16575, CLP1_P, mRNA cleavage and polyadenylation factor CLP1 
P-loop.  CLP1_P is the P-loop carrying domain of Clp1 mRNA 
cleavage and polyadenylation factor, Clp1, proteins in eukaryotes. 
Clp1 is essential for 3'-end processing of mRNAs. 
This region carries the P-loop suggesting it is the region that 
binds adenine or guanine nucleotide.
Length=187

 Score = 64.6 bits (158),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 62/156 (40%), Gaps = 16/156 (10%)

Query  12   PFFGPPFT-----HPSLAESQDGSIIR---SHHIGAISPKEDPDHYVLAAMDLMDRYRAL  63
               GPP T          +  +G  +     +  G  SP  +PD Y+    +L     + 
Sbjct  35   SEIGPPGTISLALVERPIDVPEGFSLDAPLVYFFGHTSPSGNPDLYLALVKELARVIESR  94

Query  64   LASYPQC---PLIINYPGWIFGLGLEVATWLVKSLGLSDVVYMSEKGPAEVVEPLGHAAQ  120
            L +  +     +IIN PGWI GLG E+   ++++     V+ +       +   L     
Sbjct  95   LEANKKAKASGVIINTPGWIKGLGYELLLHIIEAFEPDVVIVL---DQERLYNELKRDLP  151

Query  121  EARVPLTTLPSQPTDFV-SRSS-AQLRSMQVQSYFH  154
             ++V +  LP        SR    +LR  +++ YF+
Sbjct  152  LSKVKVVKLPKSGGVVSRSREERRELREERIREYFY  187



Lambda      K        H        a         alpha
   0.316    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00010370

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462395 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I...  138     2e-40


>CDD:462395 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit 
RPA34.5.  This is a family of proteins conserved from yeasts 
to human. Subunit A34.5 of RNA polymerase I is a non-essential 
subunit which is thought to help Pol I overcome topological 
constraints imposed on ribosomal DNA during the process 
of transcription.
Length=205

 Score = 138 bits (349),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 79/187 (42%), Positives = 103/187 (55%), Gaps = 12/187 (6%)

Query  98   LRGKQLFHITAPSFLPLSKVK--EVSLAKILQGEPILEHEGVQYGIPSENIGHGDLGGKS  155
            L GK+L+ ITAP+  PLS +K  E+ L+K   GEP+L H+GV YGI  ++    D GGK 
Sbjct  1    LEGKELWLITAPASFPLSSLKGLEIPLSKAQTGEPVLSHKGVDYGISEDSGSSEDKGGKK  60

Query  156  LLLYDSKTQTYYSAPATTMPTYHVQQLIDLPKSLGTEDAVLAAAQDQIKPPRKQPKHLKM  215
            LLL D K   Y  AP     + H+Q+++ LP          A A+   KPPR QPK LKM
Sbjct  61   LLLPDKKKDGYLPAPKPISGSLHIQEIVQLPSI-----DSEAVARPIPKPPRPQPKGLKM  115

Query  216  RFRPVGSEEGPPETIGSSSEESEGEGKPNSKFPRESKTEREERKRKHAEEVEGSQSAGLP  275
            RFRP GS  GPP TI  SS E     +   K P   K  ++++K+K   E E       P
Sbjct  116  RFRPFGSGPGPPGTI-GSSSEESEGEEEKRKVPAAKKKSKKKKKKKAETEEEEEV----P  170

Query  276  RKKTKKQ  282
            +KK KK+
Sbjct  171  KKKKKKK  177



Lambda      K        H        a         alpha
   0.301    0.120    0.320    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00010371

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462395 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I...  62.8    1e-13


>CDD:462395 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit 
RPA34.5.  This is a family of proteins conserved from yeasts 
to human. Subunit A34.5 of RNA polymerase I is a non-essential 
subunit which is thought to help Pol I overcome topological 
constraints imposed on ribosomal DNA during the process 
of transcription.
Length=205

 Score = 62.8 bits (153),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 42/108 (39%), Positives = 56/108 (52%), Gaps = 10/108 (9%)

Query  2    PTYHVQQLIDLPKSLGTEDAVLAAAQDQIKPPRKQPKHLKMRFRPVGSEEGPPETIGSSS  61
             + H+Q+++ LP          A A+   KPPR QPK LKMRFRP GS  GPP TI  SS
Sbjct  80   GSLHIQEIVQLPSI-----DSEAVARPIPKPPRPQPKGLKMRFRPFGSGPGPPGTI-GSS  133

Query  62   EESEGEGKPNSKFPRESKTEREERKRKHAEEVEGSQSAGLPRKKTKKQ  109
             E     +   K P   K  ++++K+K   E E       P+KK KK+
Sbjct  134  SEESEGEEEKRKVPAAKKKSKKKKKKKAETEEEEEV----PKKKKKKK  177



Lambda      K        H        a         alpha
   0.301    0.122    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00010372

Length=1421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427107 pfam03033, Glyco_transf_28, Glycosyltransferase family...  117     3e-31
CDD:397160 pfam02893, GRAM, GRAM domain. The GRAM domain is found...  107     1e-27
CDD:459697 pfam00169, PH, PH domain. PH stands for pleckstrin hom...  74.1    3e-16


>CDD:427107 pfam03033, Glyco_transf_28, Glycosyltransferase family 28 N-terminal 
domain.  The glycosyltransferase family 28 includes 
monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine 
transferase (EC 2.4.1.-). This N-terminal 
domain contains the acceptor binding site and likely membrane 
association site. This family also contains a large number 
of proteins that probably have quite distinct activities.
Length=139

 Score = 117 bits (296),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 39/141 (28%), Positives = 56/141 (40%), Gaps = 7/141 (5%)

Query  920   ITCLTIGSRGDVQPYIALCKGLLAEGHRPK-IATHAEFEPW-VRKHGIDFAPVEGDPAEL  977
             I     G+ G V P +AL K L   GH  + + T   FE + V K GI+F P+ G    L
Sbjct  1     IVLAGGGTGGHVFPALALAKELKKRGHEVRVLGTKRGFEEFLVEKAGIEFEPIPGGG--L  58

Query  978   MRICVENGMFT-YSFLKEASQKFRGWIDDLLSSAWASCQ--DSDLLIESPSAMAGIHIAE  1034
              R      +   +  LK   + FR   +    +            +I +P A   I I E
Sbjct  59    RRKFSPKNLKEPFKLLKGIVKAFRILKEFKPDAVIGFGGYVSLPAVIAAPLAGIPIIIHE  118

Query  1035  ALRIPYFRAFTMPWSRTRAYP  1055
                IP     T+P + T+  P
Sbjct  119   QNGIPGLTNKTLPRTATKVAP  139


>CDD:397160 pfam02893, GRAM, GRAM domain.  The GRAM domain is found in in 
glucosyltransferases, myotubularins and other putative membrane-associated 
proteins. Note the alignment is lacking the 
last two beta strands and alpha helix.
Length=112

 Score = 107 bits (268),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 57/99 (58%), Gaps = 2/99 (2%)

Query  741  RFRAHFALPPTEKLQATYFAYLHRV-LPLYGKIYVSQKKLCFRSLIPGTRTKMILPLRDI  799
             FR  F LPP E+L A+Y  YL+R   P+ G++Y++  +LCFRSL  G  TK+++PL DI
Sbjct  2    LFRKKFKLPPEERLIASYSCYLNRDGGPVQGRLYLTNYRLCFRSLPKGWSTKVVIPLVDI  61

Query  800  ENVEKEKGFRFGYHGLVIIIRGHEELFFEFRTSDARDDC  838
            E +EK KG    +   + +  G  +  F F     RD+ 
Sbjct  62   EEIEKLKGGANLFPNGIQVETGSND-KFSFAGFVTRDEA  99


>CDD:459697 pfam00169, PH, PH domain.  PH stands for pleckstrin homology.
Length=105

 Score = 74.1 bits (182),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 29/104 (28%), Positives = 46/104 (44%), Gaps = 8/104 (8%)

Query  287  IKSGYLHKRGRKNPK-YSRYWFSLKGDVLSYYADPS--NLYFPSGHVDLRYGISASLGDP  343
            +K G+L K+G    K + + +F L    L YY D        P G + L  G        
Sbjct  2    VKEGWLLKKGGGKKKSWKKRYFVLFDGSLLYYKDDKSGKSKEPKGSISLS-GCEVVEVVA  60

Query  344  KEKGREPRDFQVTTDQ----RTYYFRADSAMSAKEWVKALQKVI  383
             +  +    F++ T +    RTY  +A+S    K+W+KA+Q  I
Sbjct  61   SDSPKRKFCFELRTGERTGKRTYLLQAESEEERKDWIKAIQSAI  104



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1821241800


Query= TCONS_00010373

Length=1421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427107 pfam03033, Glyco_transf_28, Glycosyltransferase family...  117     3e-31
CDD:397160 pfam02893, GRAM, GRAM domain. The GRAM domain is found...  107     1e-27
CDD:459697 pfam00169, PH, PH domain. PH stands for pleckstrin hom...  74.1    3e-16


>CDD:427107 pfam03033, Glyco_transf_28, Glycosyltransferase family 28 N-terminal 
domain.  The glycosyltransferase family 28 includes 
monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine 
transferase (EC 2.4.1.-). This N-terminal 
domain contains the acceptor binding site and likely membrane 
association site. This family also contains a large number 
of proteins that probably have quite distinct activities.
Length=139

 Score = 117 bits (296),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 39/141 (28%), Positives = 56/141 (40%), Gaps = 7/141 (5%)

Query  920   ITCLTIGSRGDVQPYIALCKGLLAEGHRPK-IATHAEFEPW-VRKHGIDFAPVEGDPAEL  977
             I     G+ G V P +AL K L   GH  + + T   FE + V K GI+F P+ G    L
Sbjct  1     IVLAGGGTGGHVFPALALAKELKKRGHEVRVLGTKRGFEEFLVEKAGIEFEPIPGGG--L  58

Query  978   MRICVENGMFT-YSFLKEASQKFRGWIDDLLSSAWASCQ--DSDLLIESPSAMAGIHIAE  1034
              R      +   +  LK   + FR   +    +            +I +P A   I I E
Sbjct  59    RRKFSPKNLKEPFKLLKGIVKAFRILKEFKPDAVIGFGGYVSLPAVIAAPLAGIPIIIHE  118

Query  1035  ALRIPYFRAFTMPWSRTRAYP  1055
                IP     T+P + T+  P
Sbjct  119   QNGIPGLTNKTLPRTATKVAP  139


>CDD:397160 pfam02893, GRAM, GRAM domain.  The GRAM domain is found in in 
glucosyltransferases, myotubularins and other putative membrane-associated 
proteins. Note the alignment is lacking the 
last two beta strands and alpha helix.
Length=112

 Score = 107 bits (268),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 57/99 (58%), Gaps = 2/99 (2%)

Query  741  RFRAHFALPPTEKLQATYFAYLHRV-LPLYGKIYVSQKKLCFRSLIPGTRTKMILPLRDI  799
             FR  F LPP E+L A+Y  YL+R   P+ G++Y++  +LCFRSL  G  TK+++PL DI
Sbjct  2    LFRKKFKLPPEERLIASYSCYLNRDGGPVQGRLYLTNYRLCFRSLPKGWSTKVVIPLVDI  61

Query  800  ENVEKEKGFRFGYHGLVIIIRGHEELFFEFRTSDARDDC  838
            E +EK KG    +   + +  G  +  F F     RD+ 
Sbjct  62   EEIEKLKGGANLFPNGIQVETGSND-KFSFAGFVTRDEA  99


>CDD:459697 pfam00169, PH, PH domain.  PH stands for pleckstrin homology.
Length=105

 Score = 74.1 bits (182),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 29/104 (28%), Positives = 46/104 (44%), Gaps = 8/104 (8%)

Query  287  IKSGYLHKRGRKNPK-YSRYWFSLKGDVLSYYADPS--NLYFPSGHVDLRYGISASLGDP  343
            +K G+L K+G    K + + +F L    L YY D        P G + L  G        
Sbjct  2    VKEGWLLKKGGGKKKSWKKRYFVLFDGSLLYYKDDKSGKSKEPKGSISLS-GCEVVEVVA  60

Query  344  KEKGREPRDFQVTTDQ----RTYYFRADSAMSAKEWVKALQKVI  383
             +  +    F++ T +    RTY  +A+S    K+W+KA+Q  I
Sbjct  61   SDSPKRKFCFELRTGERTGKRTYLLQAESEEERKDWIKAIQSAI  104



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1821241800


Query= TCONS_00010374

Length=1405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427107 pfam03033, Glyco_transf_28, Glycosyltransferase family...  117     3e-31
CDD:397160 pfam02893, GRAM, GRAM domain. The GRAM domain is found...  107     1e-27
CDD:459697 pfam00169, PH, PH domain. PH stands for pleckstrin hom...  74.1    3e-16


>CDD:427107 pfam03033, Glyco_transf_28, Glycosyltransferase family 28 N-terminal 
domain.  The glycosyltransferase family 28 includes 
monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine 
transferase (EC 2.4.1.-). This N-terminal 
domain contains the acceptor binding site and likely membrane 
association site. This family also contains a large number 
of proteins that probably have quite distinct activities.
Length=139

 Score = 117 bits (296),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 39/141 (28%), Positives = 56/141 (40%), Gaps = 7/141 (5%)

Query  904   ITCLTIGSRGDVQPYIALCKGLLAEGHRPK-IATHAEFEPW-VRKHGIDFAPVEGDPAEL  961
             I     G+ G V P +AL K L   GH  + + T   FE + V K GI+F P+ G    L
Sbjct  1     IVLAGGGTGGHVFPALALAKELKKRGHEVRVLGTKRGFEEFLVEKAGIEFEPIPGGG--L  58

Query  962   MRICVENGMFT-YSFLKEASQKFRGWIDDLLSSAWASCQ--DSDLLIESPSAMAGIHIAE  1018
              R      +   +  LK   + FR   +    +            +I +P A   I I E
Sbjct  59    RRKFSPKNLKEPFKLLKGIVKAFRILKEFKPDAVIGFGGYVSLPAVIAAPLAGIPIIIHE  118

Query  1019  ALRIPYFRAFTMPWSRTRAYP  1039
                IP     T+P + T+  P
Sbjct  119   QNGIPGLTNKTLPRTATKVAP  139


>CDD:397160 pfam02893, GRAM, GRAM domain.  The GRAM domain is found in in 
glucosyltransferases, myotubularins and other putative membrane-associated 
proteins. Note the alignment is lacking the 
last two beta strands and alpha helix.
Length=112

 Score = 107 bits (268),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 57/99 (58%), Gaps = 2/99 (2%)

Query  725  RFRAHFALPPTEKLQATYFAYLHRV-LPLYGKIYVSQKKLCFRSLIPGTRTKMILPLRDI  783
             FR  F LPP E+L A+Y  YL+R   P+ G++Y++  +LCFRSL  G  TK+++PL DI
Sbjct  2    LFRKKFKLPPEERLIASYSCYLNRDGGPVQGRLYLTNYRLCFRSLPKGWSTKVVIPLVDI  61

Query  784  ENVEKEKGFRFGYHGLVIIIRGHEELFFEFRTSDARDDC  822
            E +EK KG    +   + +  G  +  F F     RD+ 
Sbjct  62   EEIEKLKGGANLFPNGIQVETGSND-KFSFAGFVTRDEA  99


>CDD:459697 pfam00169, PH, PH domain.  PH stands for pleckstrin homology.
Length=105

 Score = 74.1 bits (182),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 29/104 (28%), Positives = 46/104 (44%), Gaps = 8/104 (8%)

Query  287  IKSGYLHKRGRKNPK-YSRYWFSLKGDVLSYYADPS--NLYFPSGHVDLRYGISASLGDP  343
            +K G+L K+G    K + + +F L    L YY D        P G + L  G        
Sbjct  2    VKEGWLLKKGGGKKKSWKKRYFVLFDGSLLYYKDDKSGKSKEPKGSISLS-GCEVVEVVA  60

Query  344  KEKGREPRDFQVTTDQ----RTYYFRADSAMSAKEWVKALQKVI  383
             +  +    F++ T +    RTY  +A+S    K+W+KA+Q  I
Sbjct  61   SDSPKRKFCFELRTGERTGKRTYLLQAESEEERKDWIKAIQSAI  104



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1799216200


Query= TCONS_00017097

Length=1421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427107 pfam03033, Glyco_transf_28, Glycosyltransferase family...  117     3e-31
CDD:397160 pfam02893, GRAM, GRAM domain. The GRAM domain is found...  107     1e-27
CDD:459697 pfam00169, PH, PH domain. PH stands for pleckstrin hom...  74.1    3e-16


>CDD:427107 pfam03033, Glyco_transf_28, Glycosyltransferase family 28 N-terminal 
domain.  The glycosyltransferase family 28 includes 
monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine 
transferase (EC 2.4.1.-). This N-terminal 
domain contains the acceptor binding site and likely membrane 
association site. This family also contains a large number 
of proteins that probably have quite distinct activities.
Length=139

 Score = 117 bits (296),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 39/141 (28%), Positives = 56/141 (40%), Gaps = 7/141 (5%)

Query  920   ITCLTIGSRGDVQPYIALCKGLLAEGHRPK-IATHAEFEPW-VRKHGIDFAPVEGDPAEL  977
             I     G+ G V P +AL K L   GH  + + T   FE + V K GI+F P+ G    L
Sbjct  1     IVLAGGGTGGHVFPALALAKELKKRGHEVRVLGTKRGFEEFLVEKAGIEFEPIPGGG--L  58

Query  978   MRICVENGMFT-YSFLKEASQKFRGWIDDLLSSAWASCQ--DSDLLIESPSAMAGIHIAE  1034
              R      +   +  LK   + FR   +    +            +I +P A   I I E
Sbjct  59    RRKFSPKNLKEPFKLLKGIVKAFRILKEFKPDAVIGFGGYVSLPAVIAAPLAGIPIIIHE  118

Query  1035  ALRIPYFRAFTMPWSRTRAYP  1055
                IP     T+P + T+  P
Sbjct  119   QNGIPGLTNKTLPRTATKVAP  139


>CDD:397160 pfam02893, GRAM, GRAM domain.  The GRAM domain is found in in 
glucosyltransferases, myotubularins and other putative membrane-associated 
proteins. Note the alignment is lacking the 
last two beta strands and alpha helix.
Length=112

 Score = 107 bits (268),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 57/99 (58%), Gaps = 2/99 (2%)

Query  741  RFRAHFALPPTEKLQATYFAYLHRV-LPLYGKIYVSQKKLCFRSLIPGTRTKMILPLRDI  799
             FR  F LPP E+L A+Y  YL+R   P+ G++Y++  +LCFRSL  G  TK+++PL DI
Sbjct  2    LFRKKFKLPPEERLIASYSCYLNRDGGPVQGRLYLTNYRLCFRSLPKGWSTKVVIPLVDI  61

Query  800  ENVEKEKGFRFGYHGLVIIIRGHEELFFEFRTSDARDDC  838
            E +EK KG    +   + +  G  +  F F     RD+ 
Sbjct  62   EEIEKLKGGANLFPNGIQVETGSND-KFSFAGFVTRDEA  99


>CDD:459697 pfam00169, PH, PH domain.  PH stands for pleckstrin homology.
Length=105

 Score = 74.1 bits (182),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 29/104 (28%), Positives = 46/104 (44%), Gaps = 8/104 (8%)

Query  287  IKSGYLHKRGRKNPK-YSRYWFSLKGDVLSYYADPS--NLYFPSGHVDLRYGISASLGDP  343
            +K G+L K+G    K + + +F L    L YY D        P G + L  G        
Sbjct  2    VKEGWLLKKGGGKKKSWKKRYFVLFDGSLLYYKDDKSGKSKEPKGSISLS-GCEVVEVVA  60

Query  344  KEKGREPRDFQVTTDQ----RTYYFRADSAMSAKEWVKALQKVI  383
             +  +    F++ T +    RTY  +A+S    K+W+KA+Q  I
Sbjct  61   SDSPKRKFCFELRTGERTGKRTYLLQAESEEERKDWIKAIQSAI  104



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1821241800


Query= TCONS_00017098

Length=1421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427107 pfam03033, Glyco_transf_28, Glycosyltransferase family...  117     3e-31
CDD:397160 pfam02893, GRAM, GRAM domain. The GRAM domain is found...  107     1e-27
CDD:459697 pfam00169, PH, PH domain. PH stands for pleckstrin hom...  74.1    3e-16


>CDD:427107 pfam03033, Glyco_transf_28, Glycosyltransferase family 28 N-terminal 
domain.  The glycosyltransferase family 28 includes 
monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine 
transferase (EC 2.4.1.-). This N-terminal 
domain contains the acceptor binding site and likely membrane 
association site. This family also contains a large number 
of proteins that probably have quite distinct activities.
Length=139

 Score = 117 bits (296),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 39/141 (28%), Positives = 56/141 (40%), Gaps = 7/141 (5%)

Query  920   ITCLTIGSRGDVQPYIALCKGLLAEGHRPK-IATHAEFEPW-VRKHGIDFAPVEGDPAEL  977
             I     G+ G V P +AL K L   GH  + + T   FE + V K GI+F P+ G    L
Sbjct  1     IVLAGGGTGGHVFPALALAKELKKRGHEVRVLGTKRGFEEFLVEKAGIEFEPIPGGG--L  58

Query  978   MRICVENGMFT-YSFLKEASQKFRGWIDDLLSSAWASCQ--DSDLLIESPSAMAGIHIAE  1034
              R      +   +  LK   + FR   +    +            +I +P A   I I E
Sbjct  59    RRKFSPKNLKEPFKLLKGIVKAFRILKEFKPDAVIGFGGYVSLPAVIAAPLAGIPIIIHE  118

Query  1035  ALRIPYFRAFTMPWSRTRAYP  1055
                IP     T+P + T+  P
Sbjct  119   QNGIPGLTNKTLPRTATKVAP  139


>CDD:397160 pfam02893, GRAM, GRAM domain.  The GRAM domain is found in in 
glucosyltransferases, myotubularins and other putative membrane-associated 
proteins. Note the alignment is lacking the 
last two beta strands and alpha helix.
Length=112

 Score = 107 bits (268),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 57/99 (58%), Gaps = 2/99 (2%)

Query  741  RFRAHFALPPTEKLQATYFAYLHRV-LPLYGKIYVSQKKLCFRSLIPGTRTKMILPLRDI  799
             FR  F LPP E+L A+Y  YL+R   P+ G++Y++  +LCFRSL  G  TK+++PL DI
Sbjct  2    LFRKKFKLPPEERLIASYSCYLNRDGGPVQGRLYLTNYRLCFRSLPKGWSTKVVIPLVDI  61

Query  800  ENVEKEKGFRFGYHGLVIIIRGHEELFFEFRTSDARDDC  838
            E +EK KG    +   + +  G  +  F F     RD+ 
Sbjct  62   EEIEKLKGGANLFPNGIQVETGSND-KFSFAGFVTRDEA  99


>CDD:459697 pfam00169, PH, PH domain.  PH stands for pleckstrin homology.
Length=105

 Score = 74.1 bits (182),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 29/104 (28%), Positives = 46/104 (44%), Gaps = 8/104 (8%)

Query  287  IKSGYLHKRGRKNPK-YSRYWFSLKGDVLSYYADPS--NLYFPSGHVDLRYGISASLGDP  343
            +K G+L K+G    K + + +F L    L YY D        P G + L  G        
Sbjct  2    VKEGWLLKKGGGKKKSWKKRYFVLFDGSLLYYKDDKSGKSKEPKGSISLS-GCEVVEVVA  60

Query  344  KEKGREPRDFQVTTDQ----RTYYFRADSAMSAKEWVKALQKVI  383
             +  +    F++ T +    RTY  +A+S    K+W+KA+Q  I
Sbjct  61   SDSPKRKFCFELRTGERTGKRTYLLQAESEEERKDWIKAIQSAI  104



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1821241800


Query= TCONS_00010375

Length=1421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427107 pfam03033, Glyco_transf_28, Glycosyltransferase family...  117     3e-31
CDD:397160 pfam02893, GRAM, GRAM domain. The GRAM domain is found...  107     1e-27
CDD:459697 pfam00169, PH, PH domain. PH stands for pleckstrin hom...  74.1    3e-16


>CDD:427107 pfam03033, Glyco_transf_28, Glycosyltransferase family 28 N-terminal 
domain.  The glycosyltransferase family 28 includes 
monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine 
transferase (EC 2.4.1.-). This N-terminal 
domain contains the acceptor binding site and likely membrane 
association site. This family also contains a large number 
of proteins that probably have quite distinct activities.
Length=139

 Score = 117 bits (296),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 39/141 (28%), Positives = 56/141 (40%), Gaps = 7/141 (5%)

Query  920   ITCLTIGSRGDVQPYIALCKGLLAEGHRPK-IATHAEFEPW-VRKHGIDFAPVEGDPAEL  977
             I     G+ G V P +AL K L   GH  + + T   FE + V K GI+F P+ G    L
Sbjct  1     IVLAGGGTGGHVFPALALAKELKKRGHEVRVLGTKRGFEEFLVEKAGIEFEPIPGGG--L  58

Query  978   MRICVENGMFT-YSFLKEASQKFRGWIDDLLSSAWASCQ--DSDLLIESPSAMAGIHIAE  1034
              R      +   +  LK   + FR   +    +            +I +P A   I I E
Sbjct  59    RRKFSPKNLKEPFKLLKGIVKAFRILKEFKPDAVIGFGGYVSLPAVIAAPLAGIPIIIHE  118

Query  1035  ALRIPYFRAFTMPWSRTRAYP  1055
                IP     T+P + T+  P
Sbjct  119   QNGIPGLTNKTLPRTATKVAP  139


>CDD:397160 pfam02893, GRAM, GRAM domain.  The GRAM domain is found in in 
glucosyltransferases, myotubularins and other putative membrane-associated 
proteins. Note the alignment is lacking the 
last two beta strands and alpha helix.
Length=112

 Score = 107 bits (268),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 57/99 (58%), Gaps = 2/99 (2%)

Query  741  RFRAHFALPPTEKLQATYFAYLHRV-LPLYGKIYVSQKKLCFRSLIPGTRTKMILPLRDI  799
             FR  F LPP E+L A+Y  YL+R   P+ G++Y++  +LCFRSL  G  TK+++PL DI
Sbjct  2    LFRKKFKLPPEERLIASYSCYLNRDGGPVQGRLYLTNYRLCFRSLPKGWSTKVVIPLVDI  61

Query  800  ENVEKEKGFRFGYHGLVIIIRGHEELFFEFRTSDARDDC  838
            E +EK KG    +   + +  G  +  F F     RD+ 
Sbjct  62   EEIEKLKGGANLFPNGIQVETGSND-KFSFAGFVTRDEA  99


>CDD:459697 pfam00169, PH, PH domain.  PH stands for pleckstrin homology.
Length=105

 Score = 74.1 bits (182),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 29/104 (28%), Positives = 46/104 (44%), Gaps = 8/104 (8%)

Query  287  IKSGYLHKRGRKNPK-YSRYWFSLKGDVLSYYADPS--NLYFPSGHVDLRYGISASLGDP  343
            +K G+L K+G    K + + +F L    L YY D        P G + L  G        
Sbjct  2    VKEGWLLKKGGGKKKSWKKRYFVLFDGSLLYYKDDKSGKSKEPKGSISLS-GCEVVEVVA  60

Query  344  KEKGREPRDFQVTTDQ----RTYYFRADSAMSAKEWVKALQKVI  383
             +  +    F++ T +    RTY  +A+S    K+W+KA+Q  I
Sbjct  61   SDSPKRKFCFELRTGERTGKRTYLLQAESEEERKDWIKAIQSAI  104



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0754    0.140     1.90     42.6     43.6 

Effective search space used: 1821241800


Query= TCONS_00017099

Length=1405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427107 pfam03033, Glyco_transf_28, Glycosyltransferase family...  117     3e-31
CDD:397160 pfam02893, GRAM, GRAM domain. The GRAM domain is found...  107     1e-27
CDD:459697 pfam00169, PH, PH domain. PH stands for pleckstrin hom...  74.1    3e-16


>CDD:427107 pfam03033, Glyco_transf_28, Glycosyltransferase family 28 N-terminal 
domain.  The glycosyltransferase family 28 includes 
monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine 
transferase (EC 2.4.1.-). This N-terminal 
domain contains the acceptor binding site and likely membrane 
association site. This family also contains a large number 
of proteins that probably have quite distinct activities.
Length=139

 Score = 117 bits (296),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 39/141 (28%), Positives = 56/141 (40%), Gaps = 7/141 (5%)

Query  904   ITCLTIGSRGDVQPYIALCKGLLAEGHRPK-IATHAEFEPW-VRKHGIDFAPVEGDPAEL  961
             I     G+ G V P +AL K L   GH  + + T   FE + V K GI+F P+ G    L
Sbjct  1     IVLAGGGTGGHVFPALALAKELKKRGHEVRVLGTKRGFEEFLVEKAGIEFEPIPGGG--L  58

Query  962   MRICVENGMFT-YSFLKEASQKFRGWIDDLLSSAWASCQ--DSDLLIESPSAMAGIHIAE  1018
              R      +   +  LK   + FR   +    +            +I +P A   I I E
Sbjct  59    RRKFSPKNLKEPFKLLKGIVKAFRILKEFKPDAVIGFGGYVSLPAVIAAPLAGIPIIIHE  118

Query  1019  ALRIPYFRAFTMPWSRTRAYP  1039
                IP     T+P + T+  P
Sbjct  119   QNGIPGLTNKTLPRTATKVAP  139


>CDD:397160 pfam02893, GRAM, GRAM domain.  The GRAM domain is found in in 
glucosyltransferases, myotubularins and other putative membrane-associated 
proteins. Note the alignment is lacking the 
last two beta strands and alpha helix.
Length=112

 Score = 107 bits (268),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 57/99 (58%), Gaps = 2/99 (2%)

Query  725  RFRAHFALPPTEKLQATYFAYLHRV-LPLYGKIYVSQKKLCFRSLIPGTRTKMILPLRDI  783
             FR  F LPP E+L A+Y  YL+R   P+ G++Y++  +LCFRSL  G  TK+++PL DI
Sbjct  2    LFRKKFKLPPEERLIASYSCYLNRDGGPVQGRLYLTNYRLCFRSLPKGWSTKVVIPLVDI  61

Query  784  ENVEKEKGFRFGYHGLVIIIRGHEELFFEFRTSDARDDC  822
            E +EK KG    +   + +  G  +  F F     RD+ 
Sbjct  62   EEIEKLKGGANLFPNGIQVETGSND-KFSFAGFVTRDEA  99


>CDD:459697 pfam00169, PH, PH domain.  PH stands for pleckstrin homology.
Length=105

 Score = 74.1 bits (182),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 29/104 (28%), Positives = 46/104 (44%), Gaps = 8/104 (8%)

Query  287  IKSGYLHKRGRKNPK-YSRYWFSLKGDVLSYYADPS--NLYFPSGHVDLRYGISASLGDP  343
            +K G+L K+G    K + + +F L    L YY D        P G + L  G        
Sbjct  2    VKEGWLLKKGGGKKKSWKKRYFVLFDGSLLYYKDDKSGKSKEPKGSISLS-GCEVVEVVA  60

Query  344  KEKGREPRDFQVTTDQ----RTYYFRADSAMSAKEWVKALQKVI  383
             +  +    F++ T +    RTY  +A+S    K+W+KA+Q  I
Sbjct  61   SDSPKRKFCFELRTGERTGKRTYLLQAESEEERKDWIKAIQSAI  104



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1799216200


Query= TCONS_00010376

Length=1421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427107 pfam03033, Glyco_transf_28, Glycosyltransferase family...  117     3e-31
CDD:397160 pfam02893, GRAM, GRAM domain. The GRAM domain is found...  107     1e-27
CDD:459697 pfam00169, PH, PH domain. PH stands for pleckstrin hom...  74.1    3e-16


>CDD:427107 pfam03033, Glyco_transf_28, Glycosyltransferase family 28 N-terminal 
domain.  The glycosyltransferase family 28 includes 
monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine 
transferase (EC 2.4.1.-). This N-terminal 
domain contains the acceptor binding site and likely membrane 
association site. This family also contains a large number 
of proteins that probably have quite distinct activities.
Length=139

 Score = 117 bits (296),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 39/141 (28%), Positives = 56/141 (40%), Gaps = 7/141 (5%)

Query  920   ITCLTIGSRGDVQPYIALCKGLLAEGHRPK-IATHAEFEPW-VRKHGIDFAPVEGDPAEL  977
             I     G+ G V P +AL K L   GH  + + T   FE + V K GI+F P+ G    L
Sbjct  1     IVLAGGGTGGHVFPALALAKELKKRGHEVRVLGTKRGFEEFLVEKAGIEFEPIPGGG--L  58

Query  978   MRICVENGMFT-YSFLKEASQKFRGWIDDLLSSAWASCQ--DSDLLIESPSAMAGIHIAE  1034
              R      +   +  LK   + FR   +    +            +I +P A   I I E
Sbjct  59    RRKFSPKNLKEPFKLLKGIVKAFRILKEFKPDAVIGFGGYVSLPAVIAAPLAGIPIIIHE  118

Query  1035  ALRIPYFRAFTMPWSRTRAYP  1055
                IP     T+P + T+  P
Sbjct  119   QNGIPGLTNKTLPRTATKVAP  139


>CDD:397160 pfam02893, GRAM, GRAM domain.  The GRAM domain is found in in 
glucosyltransferases, myotubularins and other putative membrane-associated 
proteins. Note the alignment is lacking the 
last two beta strands and alpha helix.
Length=112

 Score = 107 bits (268),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 57/99 (58%), Gaps = 2/99 (2%)

Query  741  RFRAHFALPPTEKLQATYFAYLHRV-LPLYGKIYVSQKKLCFRSLIPGTRTKMILPLRDI  799
             FR  F LPP E+L A+Y  YL+R   P+ G++Y++  +LCFRSL  G  TK+++PL DI
Sbjct  2    LFRKKFKLPPEERLIASYSCYLNRDGGPVQGRLYLTNYRLCFRSLPKGWSTKVVIPLVDI  61

Query  800  ENVEKEKGFRFGYHGLVIIIRGHEELFFEFRTSDARDDC  838
            E +EK KG    +   + +  G  +  F F     RD+ 
Sbjct  62   EEIEKLKGGANLFPNGIQVETGSND-KFSFAGFVTRDEA  99


>CDD:459697 pfam00169, PH, PH domain.  PH stands for pleckstrin homology.
Length=105

 Score = 74.1 bits (182),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 29/104 (28%), Positives = 46/104 (44%), Gaps = 8/104 (8%)

Query  287  IKSGYLHKRGRKNPK-YSRYWFSLKGDVLSYYADPS--NLYFPSGHVDLRYGISASLGDP  343
            +K G+L K+G    K + + +F L    L YY D        P G + L  G        
Sbjct  2    VKEGWLLKKGGGKKKSWKKRYFVLFDGSLLYYKDDKSGKSKEPKGSISLS-GCEVVEVVA  60

Query  344  KEKGREPRDFQVTTDQ----RTYYFRADSAMSAKEWVKALQKVI  383
             +  +    F++ T +    RTY  +A+S    K+W+KA+Q  I
Sbjct  61   SDSPKRKFCFELRTGERTGKRTYLLQAESEEERKDWIKAIQSAI  104



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1821241800


Query= TCONS_00010379

Length=326


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00010377

Length=326


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00017100

Length=326


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00010380

Length=326


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00010381

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00010382

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00010383

Length=860
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401254 pfam09243, Rsm22, Mitochondrial small ribosomal subuni...  91.4    8e-21


>CDD:401254 pfam09243, Rsm22, Mitochondrial small ribosomal subunit Rsm22. 
 Rsm22 has been identified as a mitochondrial small ribosomal 
subunit and is a methyltransferase. In Schizosaccharomyces 
pombe, Rsm22 is tandemly fused to Cox11 (a factor required 
for copper insertion into cytochrome oxidase) and the two 
proteins are proteolytically cleaved after import into the mitochondria.
Length=275

 Score = 91.4 bits (227),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 68/262 (26%), Positives = 98/262 (37%), Gaps = 92/262 (35%)

Query  503  DVIIAPHTLLGLEEEYMRKEHVENLWTLLNPHGGVLILLEKGHQKGFEAIAGAREMLLKR  562
            D++   + L  L  E  R++ ++NLW         ++++E G   G+  +  ARE L+  
Sbjct  105  DLVTISYVLFELTNE-DREDVIDNLW---AKAAQAVVIVEPGTPAGYRRVNEARERLIAA  160

Query  563  YISSPGSTQYDELTESPNENKHIDKEEGMIIAPCTNHAKCPMYTVAGHAKGRRDFCHFEQ  622
                                         I APC +   CP+  VAG      D+CHF Q
Sbjct  161  --------------------------GFHIAAPCPHSLACPL--VAG-----LDWCHFSQ  187

Query  623  RYIRPAFLQRILGAKDRNHEDVKFSYLAVQRGVDLRKEMNIVQGPEAAEAAFAGYEHLHD  682
            R  R + L R + +    +ED KFSYL                                 
Sbjct  188  RVARSS-LHRQVKSGSLPYEDEKFSYL---------------------------------  213

Query  683  MESEDAQVSDDAATSEPSAAQDGRDFHTLSLPRAVYAPMKRRGHVIFDFCTPAGKIERWT  742
                       AA  +P A          + PR V  P  R+GHV+ D CT  G ++R T
Sbjct  214  -----------AAGRQPVAP---------AWPRVVRPPQVRKGHVLIDLCTEDGTLQRVT  253

Query  743  VPRSYSKQAYRDARKARWGDLW  764
            V + +    Y+ AR ARWGD W
Sbjct  254  VTKRHG-SLYKAARDARWGDRW  274



Lambda      K        H        a         alpha
   0.316    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1098168210


Query= TCONS_00017101

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  127     3e-33


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 127 bits (322),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 73/250 (29%), Positives = 124/250 (50%), Gaps = 25/250 (10%)

Query  4    ILATAHDYELGGASLDQIVIDHFAKEFIKKHKTDPRENARGLAKLKLEGEATRRALS-LG  62
            + AT  D  LGG   D  ++DH A+EF KK+  D  ++ R L +L+   E  +  LS   
Sbjct  212  VKATNGDTHLGGEDFDLRLVDHLAEEFKKKYGIDLSKDKRALQRLREAAEKAKIELSSNQ  271

Query  63   TNASLSIESL-ADGIDFSSTINRTRYELLSGKVFAQFTRLIEQVVQKAELDVLDIDEVIF  121
            TN +L   +  ADG D S T+ R ++E L   +F +    +E+ ++ A L   +IDEV+ 
Sbjct  272  TNINLPFITAMADGKDVSGTLTRAKFEELVADLFERTLEPVEKALKDAGLSKSEIDEVVL  331

Query  122  SGGTSHTPKIAQLARNMFSEKTKILAPSTSASAINPSELAPRGAAIQASLIQ-EFDKEDI  180
             GG++  P + +L +  F ++     PS     +NP E    GAA+QA ++   FD +D 
Sbjct  332  VGGSTRIPAVQELVKEFFGKE-----PSKG---VNPDEAVAIGAAVQAGVLSGTFDVKDF  383

Query  181  E-QNIHPMVTATPHLRNAIGVEFVHGETVEFKPLLNAETALPARRVAQYSAPKDG-GDVL  238
               ++ P+         ++G+E + G       L+   T +P ++   +S   D    V 
Sbjct  384  LLLDVTPL---------SLGIETLGG---VMTKLIPRNTTIPTKKSQIFSTAADNQTAVE  431

Query  239  VRVCEGVREI  248
            ++V +G RE+
Sbjct  432  IQVYQGEREM  441



Lambda      K        H        a         alpha
   0.312    0.130    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00010385

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  127     3e-33


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 127 bits (322),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 73/250 (29%), Positives = 124/250 (50%), Gaps = 25/250 (10%)

Query  4    ILATAHDYELGGASLDQIVIDHFAKEFIKKHKTDPRENARGLAKLKLEGEATRRALS-LG  62
            + AT  D  LGG   D  ++DH A+EF KK+  D  ++ R L +L+   E  +  LS   
Sbjct  212  VKATNGDTHLGGEDFDLRLVDHLAEEFKKKYGIDLSKDKRALQRLREAAEKAKIELSSNQ  271

Query  63   TNASLSIESL-ADGIDFSSTINRTRYELLSGKVFAQFTRLIEQVVQKAELDVLDIDEVIF  121
            TN +L   +  ADG D S T+ R ++E L   +F +    +E+ ++ A L   +IDEV+ 
Sbjct  272  TNINLPFITAMADGKDVSGTLTRAKFEELVADLFERTLEPVEKALKDAGLSKSEIDEVVL  331

Query  122  SGGTSHTPKIAQLARNMFSEKTKILAPSTSASAINPSELAPRGAAIQASLIQ-EFDKEDI  180
             GG++  P + +L +  F ++     PS     +NP E    GAA+QA ++   FD +D 
Sbjct  332  VGGSTRIPAVQELVKEFFGKE-----PSKG---VNPDEAVAIGAAVQAGVLSGTFDVKDF  383

Query  181  E-QNIHPMVTATPHLRNAIGVEFVHGETVEFKPLLNAETALPARRVAQYSAPKDG-GDVL  238
               ++ P+         ++G+E + G       L+   T +P ++   +S   D    V 
Sbjct  384  LLLDVTPL---------SLGIETLGG---VMTKLIPRNTTIPTKKSQIFSTAADNQTAVE  431

Query  239  VRVCEGVREI  248
            ++V +G RE+
Sbjct  432  IQVYQGEREM  441



Lambda      K        H        a         alpha
   0.312    0.130    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00017102

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  127     3e-33


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 127 bits (322),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 73/250 (29%), Positives = 124/250 (50%), Gaps = 25/250 (10%)

Query  4    ILATAHDYELGGASLDQIVIDHFAKEFIKKHKTDPRENARGLAKLKLEGEATRRALS-LG  62
            + AT  D  LGG   D  ++DH A+EF KK+  D  ++ R L +L+   E  +  LS   
Sbjct  212  VKATNGDTHLGGEDFDLRLVDHLAEEFKKKYGIDLSKDKRALQRLREAAEKAKIELSSNQ  271

Query  63   TNASLSIESL-ADGIDFSSTINRTRYELLSGKVFAQFTRLIEQVVQKAELDVLDIDEVIF  121
            TN +L   +  ADG D S T+ R ++E L   +F +    +E+ ++ A L   +IDEV+ 
Sbjct  272  TNINLPFITAMADGKDVSGTLTRAKFEELVADLFERTLEPVEKALKDAGLSKSEIDEVVL  331

Query  122  SGGTSHTPKIAQLARNMFSEKTKILAPSTSASAINPSELAPRGAAIQASLIQ-EFDKEDI  180
             GG++  P + +L +  F ++     PS     +NP E    GAA+QA ++   FD +D 
Sbjct  332  VGGSTRIPAVQELVKEFFGKE-----PSKG---VNPDEAVAIGAAVQAGVLSGTFDVKDF  383

Query  181  E-QNIHPMVTATPHLRNAIGVEFVHGETVEFKPLLNAETALPARRVAQYSAPKDG-GDVL  238
               ++ P+         ++G+E + G       L+   T +P ++   +S   D    V 
Sbjct  384  LLLDVTPL---------SLGIETLGG---VMTKLIPRNTTIPTKKSQIFSTAADNQTAVE  431

Query  239  VRVCEGVREI  248
            ++V +G RE+
Sbjct  432  IQVYQGEREM  441



Lambda      K        H        a         alpha
   0.312    0.130    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00010386

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399580 pfam06687, SUR7, SUR7/PalI family. This family consist...  115     1e-33


>CDD:399580 pfam06687, SUR7, SUR7/PalI family.  This family consists of several 
fungal-specific SUR7 proteins. Its activity regulates 
expression of RVS161, a homolog of human endophilin, suggesting 
a function for both in endocytosis. The protein carries 
four transmembrane domains and is thus likely to act as an 
anchoring protein for the eisosome to the plasma membrane. Eisosomes 
are the immobile protein complexes, that include the 
proteins Pil1 and Lsp1, which co-localize with sites of protein 
and lipid endocytosis at the plasma membrane. SUR7 protein 
may play a role in sporulation. This family also includes 
PalI which is part of a pH signal transduction cascade. Based 
on the similarity of PalI to the yeast Rim9 meiotic signal 
transduction component it has been suggested that PalI might 
be a membrane sensor for ambient pH.
Length=201

 Score = 115 bits (291),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 62/159 (39%), Positives = 83/159 (52%), Gaps = 3/159 (2%)

Query  10   FLGLFFTASALLLMFLAFLGGARNSNPLDRIYWLEAATGNIPGAPALSRWTYWNLCAVNS  69
             L L    +ALLL+    LGG  NS+PL+ IY LEA T  I GAP   RW  W  C  + 
Sbjct  3    LLSLLLLLAALLLLIFVILGGISNSSPLNNIYLLEADTSGISGAPDFYRWGVWGYCGNSD  62

Query  70   EGHNECGKSYPDYPFDPPSHRNFNTHVNIPAAFIGTRH-YFLTSRFMFPFHIIALFFATC  128
              +  C K    YPFDP  +   N++  +P++F  T   Y+  SRFMF  HIIALFF   
Sbjct  63   NNNTNCSKPSAGYPFDPLDNFGTNSNGKLPSSFRDTLSTYYYLSRFMFIVHIIALFFTVI  122

Query  129  SLLTGFLAMC--TRIGNWVSAFSAYFALTFQTITTCLMT  165
            +L+ G LA+   +R G  V+   ++ A  F  +   L T
Sbjct  123  ALILGLLAIFSHSRRGLLVNLLLSFLAFLFTLLAALLDT  161



Lambda      K        H        a         alpha
   0.330    0.141    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00017103

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399580 pfam06687, SUR7, SUR7/PalI family. This family consist...  115     1e-33


>CDD:399580 pfam06687, SUR7, SUR7/PalI family.  This family consists of several 
fungal-specific SUR7 proteins. Its activity regulates 
expression of RVS161, a homolog of human endophilin, suggesting 
a function for both in endocytosis. The protein carries 
four transmembrane domains and is thus likely to act as an 
anchoring protein for the eisosome to the plasma membrane. Eisosomes 
are the immobile protein complexes, that include the 
proteins Pil1 and Lsp1, which co-localize with sites of protein 
and lipid endocytosis at the plasma membrane. SUR7 protein 
may play a role in sporulation. This family also includes 
PalI which is part of a pH signal transduction cascade. Based 
on the similarity of PalI to the yeast Rim9 meiotic signal 
transduction component it has been suggested that PalI might 
be a membrane sensor for ambient pH.
Length=201

 Score = 115 bits (291),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 62/159 (39%), Positives = 83/159 (52%), Gaps = 3/159 (2%)

Query  10   FLGLFFTASALLLMFLAFLGGARNSNPLDRIYWLEAATGNIPGAPALSRWTYWNLCAVNS  69
             L L    +ALLL+    LGG  NS+PL+ IY LEA T  I GAP   RW  W  C  + 
Sbjct  3    LLSLLLLLAALLLLIFVILGGISNSSPLNNIYLLEADTSGISGAPDFYRWGVWGYCGNSD  62

Query  70   EGHNECGKSYPDYPFDPPSHRNFNTHVNIPAAFIGTRH-YFLTSRFMFPFHIIALFFATC  128
              +  C K    YPFDP  +   N++  +P++F  T   Y+  SRFMF  HIIALFF   
Sbjct  63   NNNTNCSKPSAGYPFDPLDNFGTNSNGKLPSSFRDTLSTYYYLSRFMFIVHIIALFFTVI  122

Query  129  SLLTGFLAMC--TRIGNWVSAFSAYFALTFQTITTCLMT  165
            +L+ G LA+   +R G  V+   ++ A  F  +   L T
Sbjct  123  ALILGLLAIFSHSRRGLLVNLLLSFLAFLFTLLAALLDT  161



Lambda      K        H        a         alpha
   0.330    0.141    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00010387

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399580 pfam06687, SUR7, SUR7/PalI family. This family consist...  165     8e-52


>CDD:399580 pfam06687, SUR7, SUR7/PalI family.  This family consists of several 
fungal-specific SUR7 proteins. Its activity regulates 
expression of RVS161, a homolog of human endophilin, suggesting 
a function for both in endocytosis. The protein carries 
four transmembrane domains and is thus likely to act as an 
anchoring protein for the eisosome to the plasma membrane. Eisosomes 
are the immobile protein complexes, that include the 
proteins Pil1 and Lsp1, which co-localize with sites of protein 
and lipid endocytosis at the plasma membrane. SUR7 protein 
may play a role in sporulation. This family also includes 
PalI which is part of a pH signal transduction cascade. Based 
on the similarity of PalI to the yeast Rim9 meiotic signal 
transduction component it has been suggested that PalI might 
be a membrane sensor for ambient pH.
Length=201

 Score = 165 bits (419),  Expect = 8e-52, Method: Composition-based stats.
 Identities = 81/201 (40%), Positives = 112/201 (56%), Gaps = 3/201 (1%)

Query  1    MALSSLFFTASALLLMFLAFLGGARNSNPLDRIYWLEAATGNIPGAPALSRWTYWNLCAV  60
            + L SL    +ALLL+    LGG  NS+PL+ IY LEA T  I GAP   RW  W  C  
Sbjct  1    LTLLSLLLLLAALLLLIFVILGGISNSSPLNNIYLLEADTSGISGAPDFYRWGVWGYCGN  60

Query  61   NSEGHNECGKSYPDYPFDPPSHRNFNTHVNIPAAFIGTRH-YFLTSRFMFPFHIIALFFA  119
            +   +  C K    YPFDP  +   N++  +P++F  T   Y+  SRFMF  HIIALFF 
Sbjct  61   SDNNNTNCSKPSAGYPFDPLDNFGTNSNGKLPSSFRDTLSTYYYLSRFMFIVHIIALFFT  120

Query  120  TCSLLTGFLAMC--TRIGNWVSAFSAYFALTFQTITTCLMTAVYVQGRDKFNNNGQSSHL  177
              +L+ G LA+   +R G  V+   ++ A  F  +   L TA++V+ R+ F + G S+ L
Sbjct  121  VIALILGLLAIFSHSRRGLLVNLLLSFLAFLFTLLAALLDTALFVKARNAFKDYGISASL  180

Query  178  GVKAFAFMWTSVALLFLSCVI  198
            GVK FAF+W +VA   LS + 
Sbjct  181  GVKWFAFLWLAVAAALLSLIS  201



Lambda      K        H        a         alpha
   0.327    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00010388

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00010391

Length=875
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436473 pfam18404, Glyco_transf_24, Glucosyltransferase 24. Th...  622     0.0  
CDD:461910 pfam06427, UDP-g_GGTase, UDP-glucose:Glycoprotein Gluc...  207     8e-64
CDD:465751 pfam18403, Thioredoxin_15, Thioredoxin-like domain. Th...  195     3e-58


>CDD:436473 pfam18404, Glyco_transf_24, Glucosyltransferase 24.  This is 
the catalytic domain found in UDP-glucose:glycoprotein glucosyltransferase 
(UGGT). This domain belongs to glucosyltransferase 
24 family (GT24) A-type domain. The GT domain displays 
the expected glycosyltransferase type A (GT-A) fold.
Length=268

 Score = 622 bits (1606),  Expect = 0.0, Method: Composition-based stats.
 Identities = 218/268 (81%), Positives = 240/268 (90%), Gaps = 0/268 (0%)

Query  576  INIFSVASGHLYERMLNIMMVSVMRNTKHTVKFWFIEQFLSPSFKSFLPHLAREYGFSYE  635
            INIFSVASGHLYER L IMM+SV +NTK  VKFWFIE FLSPSFK+FLPHLA+EYGF YE
Sbjct  1    INIFSVASGHLYERFLKIMMLSVRKNTKSPVKFWFIENFLSPSFKAFLPHLAKEYGFEYE  60

Query  636  MVTYKWPHWLRAQREKQREIWGYKILFLDVLFPLSLDKVIFVDADQIVRTDMYDLVSLDL  695
            +VTYKWP WLR Q EKQR IWGYKILFLDVLFPL LDKVIFVDADQ+VRTD+ +LV +DL
Sbjct  61   LVTYKWPSWLRKQTEKQRIIWGYKILFLDVLFPLDLDKVIFVDADQVVRTDLKELVDMDL  120

Query  696  EGAPYGFTPMCDSREEMEGFRFWKQGYWKNFLRGLPYHISALYVVDLNRFRALAAGDRLR  755
            EGAPYG+TPMCDSR+EMEGFRFWKQGYWK+ LRG PYHISALYVVDL RFR +AAGDRLR
Sbjct  121  EGAPYGYTPMCDSRKEMEGFRFWKQGYWKDHLRGRPYHISALYVVDLKRFRQMAAGDRLR  180

Query  756  GQYQMLSADPNSLSNLDQDLPNHMQHHIPIKSLPQEWLWCETWCSDDSLSTARTIDLCNN  815
              YQ LSADPNSL+NLDQDLPN+MQH +PI SLPQEWLWCETWCSD+SL  A+TIDLCNN
Sbjct  181  SHYQQLSADPNSLANLDQDLPNNMQHQVPIFSLPQEWLWCETWCSDESLKKAKTIDLCNN  240

Query  816  PQTKEPKLDRARRQVPEWTKYDDEIAAL  843
            P TKEPKLDRA+R +PEWT YD+E+AAL
Sbjct  241  PLTKEPKLDRAKRIIPEWTDYDEEVAAL  268


>CDD:461910 pfam06427, UDP-g_GGTase, UDP-glucose:Glycoprotein Glucosyltransferase. 
 UDP-g_GGTase is an important, central component of 
the QC system in the ER for checking that glycoproteins are 
folded correctly. This QC prevents incorrectly folded glycoproteins 
from leaving the ER.
Length=109

 Score = 207 bits (530),  Expect = 8e-64, Method: Composition-based stats.
 Identities = 72/110 (65%), Positives = 88/110 (80%), Gaps = 1/110 (1%)

Query  426  EGHSRDVTVKTAPRGVQLILGTEDNPHFADTIIMANLGYFQFKAQPGLWKINLKPGRSQR  485
            EGH+RDVT  + PRG+QL+LGTE NPH ADTI+MANLGYFQ KA PG+WK+ L+ GRS  
Sbjct  1    EGHARDVTTGSPPRGLQLVLGTEKNPHVADTIVMANLGYFQLKANPGVWKLELREGRSSD  60

Query  486  IFNLDSVGGQGYSPQPGDENNEVALLSFQGKTLFPRLSRKKGQEMEDVLD  535
            I+ ++SVG +G+ P PGDE  EVAL SF+G TL+PRLSRK G E EDVL+
Sbjct  61   IYEIESVGAEGW-PSPGDEGTEVALTSFEGLTLYPRLSRKPGMENEDVLE  109


>CDD:465751 pfam18403, Thioredoxin_15, Thioredoxin-like domain.  This is 
the fourth TRXL(thioredoxin-like) domain found in UDP-glucose:glycoprotein 
glucosyltransferase (UGGT).
Length=205

 Score = 195 bits (499),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 78/205 (38%), Positives = 115/205 (56%), Gaps = 5/205 (2%)

Query  55   DISKLAKSRGDSADTL-RIASEMDTLDSKHLIVVGDFDSENGLKLLVEALELRATHGEVE  113
            D++KL     D  D +  + +  D  D   L VV D DSE+G KLL+ ALE R ++  V 
Sbjct  1    DLNKLYSEHADLFDKMPYLEASSDKEDWATLWVVADLDSESGRKLLLSALEFRKSNPGVR  60

Query  114  MVLIHNPAPDVET-ESGSALIYNALKGTDKVDASRVLRHLKTAENT---NFPEAEAKKMS  169
            + +IHNPA   E     S+ +  AL     +DA   L  L   E        ++ A+  +
Sbjct  61   LGIIHNPASPSEASSLISSALLAALLKLKNLDALEFLTKLLEEEEAAASESGKSSAEAAA  120

Query  170  QFWEAQQALARDLGFLPGTNGVIVNGRAIGPLPDGSTLSKEDLDGLLTYEEARRIGPVAK  229
             +W+A Q   R LG  PG N +++NGR +GP+P+    S +D + LL+YE ++RI PV K
Sbjct  121  DYWKALQPFLRVLGLKPGQNALVLNGRVVGPIPEDEEFSADDFELLLSYERSKRIEPVYK  180

Query  230  AAKDLGLESKLSGPLALAELSSLAA  254
            A ++LGLE K+S P A+A+L+SL A
Sbjct  181  AIEELGLEDKISDPDAVAKLTSLVA  205



Lambda      K        H        a         alpha
   0.317    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1119700920


Query= TCONS_00010390

Length=875
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436473 pfam18404, Glyco_transf_24, Glucosyltransferase 24. Th...  622     0.0  
CDD:461910 pfam06427, UDP-g_GGTase, UDP-glucose:Glycoprotein Gluc...  207     8e-64
CDD:465751 pfam18403, Thioredoxin_15, Thioredoxin-like domain. Th...  195     3e-58


>CDD:436473 pfam18404, Glyco_transf_24, Glucosyltransferase 24.  This is 
the catalytic domain found in UDP-glucose:glycoprotein glucosyltransferase 
(UGGT). This domain belongs to glucosyltransferase 
24 family (GT24) A-type domain. The GT domain displays 
the expected glycosyltransferase type A (GT-A) fold.
Length=268

 Score = 622 bits (1606),  Expect = 0.0, Method: Composition-based stats.
 Identities = 218/268 (81%), Positives = 240/268 (90%), Gaps = 0/268 (0%)

Query  576  INIFSVASGHLYERMLNIMMVSVMRNTKHTVKFWFIEQFLSPSFKSFLPHLAREYGFSYE  635
            INIFSVASGHLYER L IMM+SV +NTK  VKFWFIE FLSPSFK+FLPHLA+EYGF YE
Sbjct  1    INIFSVASGHLYERFLKIMMLSVRKNTKSPVKFWFIENFLSPSFKAFLPHLAKEYGFEYE  60

Query  636  MVTYKWPHWLRAQREKQREIWGYKILFLDVLFPLSLDKVIFVDADQIVRTDMYDLVSLDL  695
            +VTYKWP WLR Q EKQR IWGYKILFLDVLFPL LDKVIFVDADQ+VRTD+ +LV +DL
Sbjct  61   LVTYKWPSWLRKQTEKQRIIWGYKILFLDVLFPLDLDKVIFVDADQVVRTDLKELVDMDL  120

Query  696  EGAPYGFTPMCDSREEMEGFRFWKQGYWKNFLRGLPYHISALYVVDLNRFRALAAGDRLR  755
            EGAPYG+TPMCDSR+EMEGFRFWKQGYWK+ LRG PYHISALYVVDL RFR +AAGDRLR
Sbjct  121  EGAPYGYTPMCDSRKEMEGFRFWKQGYWKDHLRGRPYHISALYVVDLKRFRQMAAGDRLR  180

Query  756  GQYQMLSADPNSLSNLDQDLPNHMQHHIPIKSLPQEWLWCETWCSDDSLSTARTIDLCNN  815
              YQ LSADPNSL+NLDQDLPN+MQH +PI SLPQEWLWCETWCSD+SL  A+TIDLCNN
Sbjct  181  SHYQQLSADPNSLANLDQDLPNNMQHQVPIFSLPQEWLWCETWCSDESLKKAKTIDLCNN  240

Query  816  PQTKEPKLDRARRQVPEWTKYDDEIAAL  843
            P TKEPKLDRA+R +PEWT YD+E+AAL
Sbjct  241  PLTKEPKLDRAKRIIPEWTDYDEEVAAL  268


>CDD:461910 pfam06427, UDP-g_GGTase, UDP-glucose:Glycoprotein Glucosyltransferase. 
 UDP-g_GGTase is an important, central component of 
the QC system in the ER for checking that glycoproteins are 
folded correctly. This QC prevents incorrectly folded glycoproteins 
from leaving the ER.
Length=109

 Score = 207 bits (530),  Expect = 8e-64, Method: Composition-based stats.
 Identities = 72/110 (65%), Positives = 88/110 (80%), Gaps = 1/110 (1%)

Query  426  EGHSRDVTVKTAPRGVQLILGTEDNPHFADTIIMANLGYFQFKAQPGLWKINLKPGRSQR  485
            EGH+RDVT  + PRG+QL+LGTE NPH ADTI+MANLGYFQ KA PG+WK+ L+ GRS  
Sbjct  1    EGHARDVTTGSPPRGLQLVLGTEKNPHVADTIVMANLGYFQLKANPGVWKLELREGRSSD  60

Query  486  IFNLDSVGGQGYSPQPGDENNEVALLSFQGKTLFPRLSRKKGQEMEDVLD  535
            I+ ++SVG +G+ P PGDE  EVAL SF+G TL+PRLSRK G E EDVL+
Sbjct  61   IYEIESVGAEGW-PSPGDEGTEVALTSFEGLTLYPRLSRKPGMENEDVLE  109


>CDD:465751 pfam18403, Thioredoxin_15, Thioredoxin-like domain.  This is 
the fourth TRXL(thioredoxin-like) domain found in UDP-glucose:glycoprotein 
glucosyltransferase (UGGT).
Length=205

 Score = 195 bits (499),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 78/205 (38%), Positives = 115/205 (56%), Gaps = 5/205 (2%)

Query  55   DISKLAKSRGDSADTL-RIASEMDTLDSKHLIVVGDFDSENGLKLLVEALELRATHGEVE  113
            D++KL     D  D +  + +  D  D   L VV D DSE+G KLL+ ALE R ++  V 
Sbjct  1    DLNKLYSEHADLFDKMPYLEASSDKEDWATLWVVADLDSESGRKLLLSALEFRKSNPGVR  60

Query  114  MVLIHNPAPDVET-ESGSALIYNALKGTDKVDASRVLRHLKTAENT---NFPEAEAKKMS  169
            + +IHNPA   E     S+ +  AL     +DA   L  L   E        ++ A+  +
Sbjct  61   LGIIHNPASPSEASSLISSALLAALLKLKNLDALEFLTKLLEEEEAAASESGKSSAEAAA  120

Query  170  QFWEAQQALARDLGFLPGTNGVIVNGRAIGPLPDGSTLSKEDLDGLLTYEEARRIGPVAK  229
             +W+A Q   R LG  PG N +++NGR +GP+P+    S +D + LL+YE ++RI PV K
Sbjct  121  DYWKALQPFLRVLGLKPGQNALVLNGRVVGPIPEDEEFSADDFELLLSYERSKRIEPVYK  180

Query  230  AAKDLGLESKLSGPLALAELSSLAA  254
            A ++LGLE K+S P A+A+L+SL A
Sbjct  181  AIEELGLEDKISDPDAVAKLTSLVA  205



Lambda      K        H        a         alpha
   0.317    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1119700920


Query= TCONS_00010392

Length=360


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0773    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00010393

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00010394

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00010395

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00010397

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372048 pfam12328, Rpp20, Rpp20 subunit of nuclear RNase MRP a...  127     6e-38


>CDD:372048 pfam12328, Rpp20, Rpp20 subunit of nuclear RNase MRP and P.  
The nuclear RNase P of Saccharomyces cerevisiae is made up of 
at least nine protein subunits; Pop1, Pop3, Pop4, Pop5, Pop6, 
Pop7, Pop8, Rpr2 and Rpp1. Many of these subunits seem to 
be present also in the RNase MRP, with the exception of Rpr2 
(Rpp21) which is unique to RNase P. Human nuclear RNase P 
and MRP appear to contain at least 10 protein subunits, Rpp14, 
Rpp20, Rpp21, Rpp25, Rpp29, Rpp30, Rpp38, Rpp40, hPop1 and 
hPop5, although there is recent evidence that not all of 
these subunits are shared between P and MRP. Archaeal RNase 
P has at least four protein subunits homologous to eukaryotic 
RNase P/MRP proteins. In the yeast RNase P, Pop6 and Pop7 
(the Rpp20 homolog) interact with each other and they are both 
interaction partners of Pop4; in the human MRP Rpp25 and 
Rpp20 interact with each other and Rpp25 binds to Rpp29 (Pop4).
Length=118

 Score = 127 bits (320),  Expect = 6e-38, Method: Composition-based stats.
 Identities = 65/191 (34%), Positives = 85/191 (45%), Gaps = 73/191 (38%)

Query  47   SVPKIVYVSTKSPFMSAVKRVQKLLRQAEKRATAAVNLSSSKTTDRQKLAEVARGQEQLS  106
             VPK +YV +K+PF+SAVKR+QKLL +AEKRA               K ++  +G E L 
Sbjct  1    KVPKTIYVKSKTPFISAVKRIQKLLDKAEKRA---------------KGSKKNKGDESLK  45

Query  107  EEAVFVKATGRAIEKALSVGRWFEERGNEYAVRVKTGSVLVVDDIEEDEEAKRKAIVEAE  166
             E V VK  G+AIEKALS+  WF+E+GN Y V V+TG+V VVDDI E++E          
Sbjct  46   LEEVVVKGMGKAIEKALSLALWFQEKGN-YKVDVRTGTVEVVDDIVEEDEEDE-------  97

Query  167  RVLQQEQAQKKKEDEKDDGQPAADQSVDAPAQPVSKSETKKRKRAANVLASASSEELPET  226
                                                                  +E PET
Sbjct  98   --------------------------------------------------DDDDDEEPET  107

Query  227  RTRWVNMVEIA  237
            R R V+ VE+ 
Sbjct  108  RKRTVSAVEVR  118



Lambda      K        H        a         alpha
   0.309    0.123    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00010396

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459831 pfam00498, FHA, FHA domain. The FHA (Forkhead-associat...  70.7    3e-16


>CDD:459831 pfam00498, FHA, FHA domain.  The FHA (Forkhead-associated) domain 
is a phosphopeptide binding motif.
Length=66

 Score = 70.7 bits (174),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 27/59 (46%), Positives = 37/59 (63%), Gaps = 5/59 (8%)

Query  207  FDSKVLSRQHAEIWADKSGKIWIRDVKSSNGTFVNGQRLSPENRESEPHELRENDTLEL  265
             D   +SR+HAEI  D  G+ ++ D+ S+NGTFVNGQRL P     EP  L++ D + L
Sbjct  13   LDDPSVSRRHAEIRYDGGGRFYLEDLGSTNGTFVNGQRLGP-----EPVRLKDGDVIRL  66



Lambda      K        H        a         alpha
   0.310    0.124    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00017104

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459831 pfam00498, FHA, FHA domain. The FHA (Forkhead-associat...  70.7    3e-16


>CDD:459831 pfam00498, FHA, FHA domain.  The FHA (Forkhead-associated) domain 
is a phosphopeptide binding motif.
Length=66

 Score = 70.7 bits (174),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 27/59 (46%), Positives = 37/59 (63%), Gaps = 5/59 (8%)

Query  207  FDSKVLSRQHAEIWADKSGKIWIRDVKSSNGTFVNGQRLSPENRESEPHELRENDTLEL  265
             D   +SR+HAEI  D  G+ ++ D+ S+NGTFVNGQRL P     EP  L++ D + L
Sbjct  13   LDDPSVSRRHAEIRYDGGGRFYLEDLGSTNGTFVNGQRLGP-----EPVRLKDGDVIRL  66



Lambda      K        H        a         alpha
   0.310    0.124    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00017105

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459831 pfam00498, FHA, FHA domain. The FHA (Forkhead-associat...  70.7    3e-16


>CDD:459831 pfam00498, FHA, FHA domain.  The FHA (Forkhead-associated) domain 
is a phosphopeptide binding motif.
Length=66

 Score = 70.7 bits (174),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 27/59 (46%), Positives = 37/59 (63%), Gaps = 5/59 (8%)

Query  207  FDSKVLSRQHAEIWADKSGKIWIRDVKSSNGTFVNGQRLSPENRESEPHELRENDTLEL  265
             D   +SR+HAEI  D  G+ ++ D+ S+NGTFVNGQRL P     EP  L++ D + L
Sbjct  13   LDDPSVSRRHAEIRYDGGGRFYLEDLGSTNGTFVNGQRLGP-----EPVRLKDGDVIRL  66



Lambda      K        H        a         alpha
   0.310    0.124    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00010398

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459831 pfam00498, FHA, FHA domain. The FHA (Forkhead-associat...  70.7    3e-16


>CDD:459831 pfam00498, FHA, FHA domain.  The FHA (Forkhead-associated) domain 
is a phosphopeptide binding motif.
Length=66

 Score = 70.7 bits (174),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 27/59 (46%), Positives = 37/59 (63%), Gaps = 5/59 (8%)

Query  207  FDSKVLSRQHAEIWADKSGKIWIRDVKSSNGTFVNGQRLSPENRESEPHELRENDTLEL  265
             D   +SR+HAEI  D  G+ ++ D+ S+NGTFVNGQRL P     EP  L++ D + L
Sbjct  13   LDDPSVSRRHAEIRYDGGGRFYLEDLGSTNGTFVNGQRLGP-----EPVRLKDGDVIRL  66



Lambda      K        H        a         alpha
   0.310    0.124    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00017106

Length=88
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen specie...  77.2    3e-21


>CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen species modulator 
1.  This is a family of small, approximately 100 amino 
acid, proteins found from yeasts to humans. The majority of 
endogenous reactive oxygen species (ROS) in cells are produced 
by the mitochondrial respiratory chain. An increase or imbalance 
in ROS alters the intracellular redox homeostasis, triggers 
DNA damage, and may contribute to cancer development 
and progression. Members of this family are mitochondrial reactive 
oxygen species modulator 1 (Romo1) proteins that are 
responsible for increasing the level of ROS in cells. Increased 
Romo1 expression can have a number of other effects including: 
inducing premature senescence of cultured human fibroblasts 
and increased resistance to 5-fluorouracil.
Length=66

 Score = 77.2 bits (191),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 40/59 (68%), Gaps = 0/59 (0%)

Query  1   MGALMGSTVGGIMGFIIGTVTIFQYGAGPNGVMRTLGKYMLGSGATFGLFMSIGSVIRT  59
           MG +MG  VGG  G + G  T  +YG    G++RTLGKYMLGS  TFG FMSIGSVIR 
Sbjct  8   MGFMMGGAVGGAFGALFGGFTALRYGPRGRGLLRTLGKYMLGSAGTFGFFMSIGSVIRC  66



Lambda      K        H        a         alpha
   0.325    0.143    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00010399

Length=101
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen specie...  76.1    1e-20


>CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen species modulator 
1.  This is a family of small, approximately 100 amino 
acid, proteins found from yeasts to humans. The majority of 
endogenous reactive oxygen species (ROS) in cells are produced 
by the mitochondrial respiratory chain. An increase or imbalance 
in ROS alters the intracellular redox homeostasis, triggers 
DNA damage, and may contribute to cancer development 
and progression. Members of this family are mitochondrial reactive 
oxygen species modulator 1 (Romo1) proteins that are 
responsible for increasing the level of ROS in cells. Increased 
Romo1 expression can have a number of other effects including: 
inducing premature senescence of cultured human fibroblasts 
and increased resistance to 5-fluorouracil.
Length=66

 Score = 76.1 bits (188),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 37/57 (65%), Gaps = 0/57 (0%)

Query  14  STFDKMKMGALMGSTVGGIMGFIIGTVTIFQYGAGPNGVMRTLGKYMLGSGATFGVI  70
           S FDK+KMG +MG  VGG  G + G  T  +YG    G++RTLGKYMLGS  TFG  
Sbjct  1   SCFDKIKMGFMMGGAVGGAFGALFGGFTALRYGPRGRGLLRTLGKYMLGSAGTFGFF  57



Lambda      K        H        a         alpha
   0.322    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00017107

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00010400

Length=88
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen specie...  77.2    3e-21


>CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen species modulator 
1.  This is a family of small, approximately 100 amino 
acid, proteins found from yeasts to humans. The majority of 
endogenous reactive oxygen species (ROS) in cells are produced 
by the mitochondrial respiratory chain. An increase or imbalance 
in ROS alters the intracellular redox homeostasis, triggers 
DNA damage, and may contribute to cancer development 
and progression. Members of this family are mitochondrial reactive 
oxygen species modulator 1 (Romo1) proteins that are 
responsible for increasing the level of ROS in cells. Increased 
Romo1 expression can have a number of other effects including: 
inducing premature senescence of cultured human fibroblasts 
and increased resistance to 5-fluorouracil.
Length=66

 Score = 77.2 bits (191),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 40/59 (68%), Gaps = 0/59 (0%)

Query  1   MGALMGSTVGGIMGFIIGTVTIFQYGAGPNGVMRTLGKYMLGSGATFGLFMSIGSVIRT  59
           MG +MG  VGG  G + G  T  +YG    G++RTLGKYMLGS  TFG FMSIGSVIR 
Sbjct  8   MGFMMGGAVGGAFGALFGGFTALRYGPRGRGLLRTLGKYMLGSAGTFGFFMSIGSVIRC  66



Lambda      K        H        a         alpha
   0.325    0.143    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00010402

Length=92
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen specie...  71.4    6e-19


>CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen species modulator 
1.  This is a family of small, approximately 100 amino 
acid, proteins found from yeasts to humans. The majority of 
endogenous reactive oxygen species (ROS) in cells are produced 
by the mitochondrial respiratory chain. An increase or imbalance 
in ROS alters the intracellular redox homeostasis, triggers 
DNA damage, and may contribute to cancer development 
and progression. Members of this family are mitochondrial reactive 
oxygen species modulator 1 (Romo1) proteins that are 
responsible for increasing the level of ROS in cells. Increased 
Romo1 expression can have a number of other effects including: 
inducing premature senescence of cultured human fibroblasts 
and increased resistance to 5-fluorouracil.
Length=66

 Score = 71.4 bits (176),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 32/52 (62%), Positives = 36/52 (69%), Gaps = 0/52 (0%)

Query  12  AVGGIMGFIIGTVTIFQYGAGPNGVMRTLGKYMLGSGATFGLFMSIGSVIRT  63
           AVGG  G + G  T  +YG    G++RTLGKYMLGS  TFG FMSIGSVIR 
Sbjct  15  AVGGAFGALFGGFTALRYGPRGRGLLRTLGKYMLGSAGTFGFFMSIGSVIRC  66



Lambda      K        H        a         alpha
   0.326    0.143    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00017108

Length=101
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen specie...  76.1    1e-20


>CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen species modulator 
1.  This is a family of small, approximately 100 amino 
acid, proteins found from yeasts to humans. The majority of 
endogenous reactive oxygen species (ROS) in cells are produced 
by the mitochondrial respiratory chain. An increase or imbalance 
in ROS alters the intracellular redox homeostasis, triggers 
DNA damage, and may contribute to cancer development 
and progression. Members of this family are mitochondrial reactive 
oxygen species modulator 1 (Romo1) proteins that are 
responsible for increasing the level of ROS in cells. Increased 
Romo1 expression can have a number of other effects including: 
inducing premature senescence of cultured human fibroblasts 
and increased resistance to 5-fluorouracil.
Length=66

 Score = 76.1 bits (188),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 37/57 (65%), Gaps = 0/57 (0%)

Query  14  STFDKMKMGALMGSTVGGIMGFIIGTVTIFQYGAGPNGVMRTLGKYMLGSGATFGVI  70
           S FDK+KMG +MG  VGG  G + G  T  +YG    G++RTLGKYMLGS  TFG  
Sbjct  1   SCFDKIKMGFMMGGAVGGAFGALFGGFTALRYGPRGRGLLRTLGKYMLGSAGTFGFF  57



Lambda      K        H        a         alpha
   0.322    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00017109

Length=76
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen specie...  65.3    9e-17


>CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen species modulator 
1.  This is a family of small, approximately 100 amino 
acid, proteins found from yeasts to humans. The majority of 
endogenous reactive oxygen species (ROS) in cells are produced 
by the mitochondrial respiratory chain. An increase or imbalance 
in ROS alters the intracellular redox homeostasis, triggers 
DNA damage, and may contribute to cancer development 
and progression. Members of this family are mitochondrial reactive 
oxygen species modulator 1 (Romo1) proteins that are 
responsible for increasing the level of ROS in cells. Increased 
Romo1 expression can have a number of other effects including: 
inducing premature senescence of cultured human fibroblasts 
and increased resistance to 5-fluorouracil.
Length=66

 Score = 65.3 bits (160),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 28/47 (60%), Positives = 32/47 (68%), Gaps = 0/47 (0%)

Query  1   MGFIIGTVTIFQYGAGPNGVMRTLGKYMLGSGATFGLFMSIGSVIRT  47
            G + G  T  +YG    G++RTLGKYMLGS  TFG FMSIGSVIR 
Sbjct  20  FGALFGGFTALRYGPRGRGLLRTLGKYMLGSAGTFGFFMSIGSVIRC  66



Lambda      K        H        a         alpha
   0.325    0.143    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00010401

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen specie...  88.4    8e-25


>CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen species modulator 
1.  This is a family of small, approximately 100 amino 
acid, proteins found from yeasts to humans. The majority of 
endogenous reactive oxygen species (ROS) in cells are produced 
by the mitochondrial respiratory chain. An increase or imbalance 
in ROS alters the intracellular redox homeostasis, triggers 
DNA damage, and may contribute to cancer development 
and progression. Members of this family are mitochondrial reactive 
oxygen species modulator 1 (Romo1) proteins that are 
responsible for increasing the level of ROS in cells. Increased 
Romo1 expression can have a number of other effects including: 
inducing premature senescence of cultured human fibroblasts 
and increased resistance to 5-fluorouracil.
Length=66

 Score = 88.4 bits (220),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 40/66 (61%), Positives = 46/66 (70%), Gaps = 0/66 (0%)

Query  14  STFDKMKMGALMGSTVGGIMGFIIGTVTIFQYGAGPNGVMRTLGKYMLGSGATFGLFMSI  73
           S FDK+KMG +MG  VGG  G + G  T  +YG    G++RTLGKYMLGS  TFG FMSI
Sbjct  1   SCFDKIKMGFMMGGAVGGAFGALFGGFTALRYGPRGRGLLRTLGKYMLGSAGTFGFFMSI  60

Query  74  GSVIRT  79
           GSVIR 
Sbjct  61  GSVIRC  66



Lambda      K        H        a         alpha
   0.324    0.140    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00010403

Length=108
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen specie...  89.9    6e-26


>CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen species modulator 
1.  This is a family of small, approximately 100 amino 
acid, proteins found from yeasts to humans. The majority of 
endogenous reactive oxygen species (ROS) in cells are produced 
by the mitochondrial respiratory chain. An increase or imbalance 
in ROS alters the intracellular redox homeostasis, triggers 
DNA damage, and may contribute to cancer development 
and progression. Members of this family are mitochondrial reactive 
oxygen species modulator 1 (Romo1) proteins that are 
responsible for increasing the level of ROS in cells. Increased 
Romo1 expression can have a number of other effects including: 
inducing premature senescence of cultured human fibroblasts 
and increased resistance to 5-fluorouracil.
Length=66

 Score = 89.9 bits (224),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 40/66 (61%), Positives = 46/66 (70%), Gaps = 0/66 (0%)

Query  14  STFDKMKMGALMGSTVGGIMGFIIGTVTIFQYGAGPNGVMRTLGKYMLGSGATFGLFMSI  73
           S FDK+KMG +MG  VGG  G + G  T  +YG    G++RTLGKYMLGS  TFG FMSI
Sbjct  1   SCFDKIKMGFMMGGAVGGAFGALFGGFTALRYGPRGRGLLRTLGKYMLGSAGTFGFFMSI  60

Query  74  GSVIRT  79
           GSVIR 
Sbjct  61  GSVIRC  66



Lambda      K        H        a         alpha
   0.323    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00010404

Length=108
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen specie...  89.9    6e-26


>CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen species modulator 
1.  This is a family of small, approximately 100 amino 
acid, proteins found from yeasts to humans. The majority of 
endogenous reactive oxygen species (ROS) in cells are produced 
by the mitochondrial respiratory chain. An increase or imbalance 
in ROS alters the intracellular redox homeostasis, triggers 
DNA damage, and may contribute to cancer development 
and progression. Members of this family are mitochondrial reactive 
oxygen species modulator 1 (Romo1) proteins that are 
responsible for increasing the level of ROS in cells. Increased 
Romo1 expression can have a number of other effects including: 
inducing premature senescence of cultured human fibroblasts 
and increased resistance to 5-fluorouracil.
Length=66

 Score = 89.9 bits (224),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 40/66 (61%), Positives = 46/66 (70%), Gaps = 0/66 (0%)

Query  14  STFDKMKMGALMGSTVGGIMGFIIGTVTIFQYGAGPNGVMRTLGKYMLGSGATFGLFMSI  73
           S FDK+KMG +MG  VGG  G + G  T  +YG    G++RTLGKYMLGS  TFG FMSI
Sbjct  1   SCFDKIKMGFMMGGAVGGAFGALFGGFTALRYGPRGRGLLRTLGKYMLGSAGTFGFFMSI  60

Query  74  GSVIRT  79
           GSVIR 
Sbjct  61  GSVIRC  66



Lambda      K        H        a         alpha
   0.323    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00017110

Length=108
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen specie...  89.9    6e-26


>CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen species modulator 
1.  This is a family of small, approximately 100 amino 
acid, proteins found from yeasts to humans. The majority of 
endogenous reactive oxygen species (ROS) in cells are produced 
by the mitochondrial respiratory chain. An increase or imbalance 
in ROS alters the intracellular redox homeostasis, triggers 
DNA damage, and may contribute to cancer development 
and progression. Members of this family are mitochondrial reactive 
oxygen species modulator 1 (Romo1) proteins that are 
responsible for increasing the level of ROS in cells. Increased 
Romo1 expression can have a number of other effects including: 
inducing premature senescence of cultured human fibroblasts 
and increased resistance to 5-fluorouracil.
Length=66

 Score = 89.9 bits (224),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 40/66 (61%), Positives = 46/66 (70%), Gaps = 0/66 (0%)

Query  14  STFDKMKMGALMGSTVGGIMGFIIGTVTIFQYGAGPNGVMRTLGKYMLGSGATFGLFMSI  73
           S FDK+KMG +MG  VGG  G + G  T  +YG    G++RTLGKYMLGS  TFG FMSI
Sbjct  1   SCFDKIKMGFMMGGAVGGAFGALFGGFTALRYGPRGRGLLRTLGKYMLGSAGTFGFFMSI  60

Query  74  GSVIRT  79
           GSVIR 
Sbjct  61  GSVIRC  66



Lambda      K        H        a         alpha
   0.323    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00017111

Length=108
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen specie...  89.9    6e-26


>CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen species modulator 
1.  This is a family of small, approximately 100 amino 
acid, proteins found from yeasts to humans. The majority of 
endogenous reactive oxygen species (ROS) in cells are produced 
by the mitochondrial respiratory chain. An increase or imbalance 
in ROS alters the intracellular redox homeostasis, triggers 
DNA damage, and may contribute to cancer development 
and progression. Members of this family are mitochondrial reactive 
oxygen species modulator 1 (Romo1) proteins that are 
responsible for increasing the level of ROS in cells. Increased 
Romo1 expression can have a number of other effects including: 
inducing premature senescence of cultured human fibroblasts 
and increased resistance to 5-fluorouracil.
Length=66

 Score = 89.9 bits (224),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 40/66 (61%), Positives = 46/66 (70%), Gaps = 0/66 (0%)

Query  14  STFDKMKMGALMGSTVGGIMGFIIGTVTIFQYGAGPNGVMRTLGKYMLGSGATFGLFMSI  73
           S FDK+KMG +MG  VGG  G + G  T  +YG    G++RTLGKYMLGS  TFG FMSI
Sbjct  1   SCFDKIKMGFMMGGAVGGAFGALFGGFTALRYGPRGRGLLRTLGKYMLGSAGTFGFFMSI  60

Query  74  GSVIRT  79
           GSVIR 
Sbjct  61  GSVIRC  66



Lambda      K        H        a         alpha
   0.323    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00017112

Length=84
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen specie...  65.7    1e-16


>CDD:431168 pfam10247, Romo1, Reactive mitochondrial oxygen species modulator 
1.  This is a family of small, approximately 100 amino 
acid, proteins found from yeasts to humans. The majority of 
endogenous reactive oxygen species (ROS) in cells are produced 
by the mitochondrial respiratory chain. An increase or imbalance 
in ROS alters the intracellular redox homeostasis, triggers 
DNA damage, and may contribute to cancer development 
and progression. Members of this family are mitochondrial reactive 
oxygen species modulator 1 (Romo1) proteins that are 
responsible for increasing the level of ROS in cells. Increased 
Romo1 expression can have a number of other effects including: 
inducing premature senescence of cultured human fibroblasts 
and increased resistance to 5-fluorouracil.
Length=66

 Score = 65.7 bits (161),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  1   MGSSEFGIMGFIIGSCTIFQYGAGPNGVMRTLGKYMLGSGATFGLFMSIGSVIRT  55
           MG +  G  G + G  T  +YG    G++RTLGKYMLGS  TFG FMSIGSVIR 
Sbjct  12  MGGAVGGAFGALFGGFTALRYGPRGRGLLRTLGKYMLGSAGTFGFFMSIGSVIRC  66



Lambda      K        H        a         alpha
   0.325    0.142    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00010405

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00010406

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00010407

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00017115

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00017116

Length=737
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460499 pfam02225, PA, PA domain. The PA (Protease associated)...  60.6    5e-12


>CDD:460499 pfam02225, PA, PA domain.  The PA (Protease associated) domain 
is found as an insert domain in diverse proteases. The PA 
domain is also found in a plant vacuolar sorting receptor and 
members of the RZF family. It has been suggested that this 
domain forms a lid-like structure that covers the active site 
in active proteases, and is involved in protein recognition 
in vacuolar sorting receptors.
Length=91

 Score = 60.6 bits (147),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (3%)

Query  222  ESAEIDGKVVLLSRGGCGFLEKVKWAQRRGAIAVIVGDDTRGGSLVTMYA--RGDTSNVT  279
               ++ GK+VL+        EKV+ AQ  GA  VI+ ++  G                + 
Sbjct  18   ADFDVKGKIVLVRCTFGFRAEKVRNAQAAGAAGVIIYNNVEGLGGPPGAGGNELYPDGIY  77

Query  280  IPAVFTSYTTAHLL  293
            IPAV  S      L
Sbjct  78   IPAVGVSRADGEAL  91



Lambda      K        H        a         alpha
   0.312    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 935662736


Query= TCONS_00017117

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00017118

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00010408

Length=857
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   66.3    2e-14
CDD:460499 pfam02225, PA, PA domain. The PA (Protease associated)...  60.6    6e-12
CDD:395049 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING fin...  56.6    4e-11


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 66.3 bits (162),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 31/45 (69%), Gaps = 2/45 (4%)

Query  708  ECVVCLEEYIDGQSRVMSLPCGHEFHAECITPWLTTRRRTCPICK  752
            EC +CLEE+ +G   V+ LPCGH FH EC+  WL +   TCP+C+
Sbjct  2    ECPICLEEFEEGDK-VVVLPCGHHFHRECLDKWLRS-SNTCPLCR  44


>CDD:460499 pfam02225, PA, PA domain.  The PA (Protease associated) domain 
is found as an insert domain in diverse proteases. The PA 
domain is also found in a plant vacuolar sorting receptor and 
members of the RZF family. It has been suggested that this 
domain forms a lid-like structure that covers the active site 
in active proteases, and is involved in protein recognition 
in vacuolar sorting receptors.
Length=91

 Score = 60.6 bits (147),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (3%)

Query  222  ESAEIDGKVVLLSRGGCGFLEKVKWAQRRGAIAVIVGDDTRGGSLVTMYA--RGDTSNVT  279
               ++ GK+VL+        EKV+ AQ  GA  VI+ ++  G                + 
Sbjct  18   ADFDVKGKIVLVRCTFGFRAEKVRNAQAAGAAGVIIYNNVEGLGGPPGAGGNELYPDGIY  77

Query  280  IPAVFTSYTTAHLL  293
            IPAV  S      L
Sbjct  78   IPAVGVSRADGEAL  91


>CDD:395049 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger).  
The C3HC4 type zinc-finger (RING finger) is a cysteine-rich 
domain of 40 to 60 residues that coordinates two zinc ions, 
and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C 
where X is any amino acid. Many proteins 
containing a RING finger play a key role in the ubiquitination 
pathway.
Length=40

 Score = 56.6 bits (137),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 21/43 (49%), Positives = 26/43 (60%), Gaps = 3/43 (7%)

Query  709  CVVCLEEYIDGQSRVMSLPCGHEFHAECITPWLTTRRRTCPIC  751
            C +CLEE  D    V  LPCGH F ++CI  WL +   TCP+C
Sbjct  1    CPICLEEPKDP---VTLLPCGHLFCSKCIRSWLESGNVTCPLC  40



Lambda      K        H        a         alpha
   0.312    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1093861668


Query= TCONS_00010409

Length=857
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   66.3    2e-14
CDD:460499 pfam02225, PA, PA domain. The PA (Protease associated)...  60.6    6e-12
CDD:395049 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING fin...  56.6    4e-11


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 66.3 bits (162),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 31/45 (69%), Gaps = 2/45 (4%)

Query  708  ECVVCLEEYIDGQSRVMSLPCGHEFHAECITPWLTTRRRTCPICK  752
            EC +CLEE+ +G   V+ LPCGH FH EC+  WL +   TCP+C+
Sbjct  2    ECPICLEEFEEGDK-VVVLPCGHHFHRECLDKWLRS-SNTCPLCR  44


>CDD:460499 pfam02225, PA, PA domain.  The PA (Protease associated) domain 
is found as an insert domain in diverse proteases. The PA 
domain is also found in a plant vacuolar sorting receptor and 
members of the RZF family. It has been suggested that this 
domain forms a lid-like structure that covers the active site 
in active proteases, and is involved in protein recognition 
in vacuolar sorting receptors.
Length=91

 Score = 60.6 bits (147),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (3%)

Query  222  ESAEIDGKVVLLSRGGCGFLEKVKWAQRRGAIAVIVGDDTRGGSLVTMYA--RGDTSNVT  279
               ++ GK+VL+        EKV+ AQ  GA  VI+ ++  G                + 
Sbjct  18   ADFDVKGKIVLVRCTFGFRAEKVRNAQAAGAAGVIIYNNVEGLGGPPGAGGNELYPDGIY  77

Query  280  IPAVFTSYTTAHLL  293
            IPAV  S      L
Sbjct  78   IPAVGVSRADGEAL  91


>CDD:395049 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger).  
The C3HC4 type zinc-finger (RING finger) is a cysteine-rich 
domain of 40 to 60 residues that coordinates two zinc ions, 
and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C 
where X is any amino acid. Many proteins 
containing a RING finger play a key role in the ubiquitination 
pathway.
Length=40

 Score = 56.6 bits (137),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 21/43 (49%), Positives = 26/43 (60%), Gaps = 3/43 (7%)

Query  709  CVVCLEEYIDGQSRVMSLPCGHEFHAECITPWLTTRRRTCPIC  751
            C +CLEE  D    V  LPCGH F ++CI  WL +   TCP+C
Sbjct  1    CPICLEEPKDP---VTLLPCGHLFCSKCIRSWLESGNVTCPLC  40



Lambda      K        H        a         alpha
   0.312    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1093861668


Query= TCONS_00017119

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00010411

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00010410

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00010412

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00010415

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00010416

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430993 pfam10021, DUF2263, Uncharacterized protein conserved ...  98.4    5e-27


>CDD:430993 pfam10021, DUF2263, Uncharacterized protein conserved in bacteria 
(DUF2263).  This domain, found in various hypothetical 
bacterial and eukaryotic proteins, has no known function.
Length=136

 Score = 98.4 bits (246),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 38/99 (38%), Positives = 54/99 (55%), Gaps = 12/99 (12%)

Query  55   TQKPTLSVTSQDSFTAAQDILQRTGGRARVGVLNMASERTPGGGWLNGALAQEEALCLRS  114
             +   + VT++ +  AA+ ++   GG   V VLN AS + PGGG+LNGA AQEE+L   S
Sbjct  40   ERTTKIEVTNESTLEAARRLVAEEGGN--VAVLNFASAKNPGGGFLNGAQAQEESLARSS  97

Query  115  TLAATLDRK--YY--------PLPVYGAVWSPAVVVFRD  143
             L  +L +   +Y        PL     ++SP V VFRD
Sbjct  98   ALYPSLLQAPEFYDAHRAKRSPLYSDAMIYSPGVPVFRD  136



Lambda      K        H        a         alpha
   0.318    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00010418

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00010417

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430993 pfam10021, DUF2263, Uncharacterized protein conserved ...  98.4    5e-27


>CDD:430993 pfam10021, DUF2263, Uncharacterized protein conserved in bacteria 
(DUF2263).  This domain, found in various hypothetical 
bacterial and eukaryotic proteins, has no known function.
Length=136

 Score = 98.4 bits (246),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 38/99 (38%), Positives = 54/99 (55%), Gaps = 12/99 (12%)

Query  55   TQKPTLSVTSQDSFTAAQDILQRTGGRARVGVLNMASERTPGGGWLNGALAQEEALCLRS  114
             +   + VT++ +  AA+ ++   GG   V VLN AS + PGGG+LNGA AQEE+L   S
Sbjct  40   ERTTKIEVTNESTLEAARRLVAEEGGN--VAVLNFASAKNPGGGFLNGAQAQEESLARSS  97

Query  115  TLAATLDRK--YY--------PLPVYGAVWSPAVVVFRD  143
             L  +L +   +Y        PL     ++SP V VFRD
Sbjct  98   ALYPSLLQAPEFYDAHRAKRSPLYSDAMIYSPGVPVFRD  136



Lambda      K        H        a         alpha
   0.318    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00010419

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00017121

Length=1496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396078 pfam01344, Kelch_1, Kelch motif. The kelch motif was i...  61.5    2e-12


>CDD:396078 pfam01344, Kelch_1, Kelch motif.  The kelch motif was initially 
discovered in Kelch. In this protein there are six copies 
of the motif. It has been shown that the ring canal kelch protein 
is related to Galactose Oxidase for which a structure 
has been solved. The kelch motif forms a beta sheet. Several 
of these sheets associate to form a beta propeller structure 
as found in pfam00064, pfam00400 and pfam00415.
Length=46

 Score = 61.5 bits (150),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (55%), Gaps = 0/42 (0%)

Query  298  ARTNHTMVSFNDKLYLFGGTNGLQWFNDVWSYDPRANQWSQL  339
             R+   +V    K+Y+ GG +G Q  N V  YDP  N WS+L
Sbjct  1    RRSGAGVVVVGGKIYVIGGFDGNQSLNSVEVYDPETNTWSKL  42



Lambda      K        H        a         alpha
   0.309    0.125    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1895675914


Query= TCONS_00010420

Length=1136


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0647    0.140     1.90     42.6     43.6 

Effective search space used: 1450691282


Query= TCONS_00017123

Length=1193


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1530276848


Query= TCONS_00017122

Length=1193


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1530276848


Query= TCONS_00010422

Length=1496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396078 pfam01344, Kelch_1, Kelch motif. The kelch motif was i...  61.5    2e-12


>CDD:396078 pfam01344, Kelch_1, Kelch motif.  The kelch motif was initially 
discovered in Kelch. In this protein there are six copies 
of the motif. It has been shown that the ring canal kelch protein 
is related to Galactose Oxidase for which a structure 
has been solved. The kelch motif forms a beta sheet. Several 
of these sheets associate to form a beta propeller structure 
as found in pfam00064, pfam00400 and pfam00415.
Length=46

 Score = 61.5 bits (150),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (55%), Gaps = 0/42 (0%)

Query  298  ARTNHTMVSFNDKLYLFGGTNGLQWFNDVWSYDPRANQWSQL  339
             R+   +V    K+Y+ GG +G Q  N V  YDP  N WS+L
Sbjct  1    RRSGAGVVVVGGKIYVIGGFDGNQSLNSVEVYDPETNTWSKL  42



Lambda      K        H        a         alpha
   0.309    0.125    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1895675914


Query= TCONS_00010421

Length=1496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396078 pfam01344, Kelch_1, Kelch motif. The kelch motif was i...  61.5    2e-12


>CDD:396078 pfam01344, Kelch_1, Kelch motif.  The kelch motif was initially 
discovered in Kelch. In this protein there are six copies 
of the motif. It has been shown that the ring canal kelch protein 
is related to Galactose Oxidase for which a structure 
has been solved. The kelch motif forms a beta sheet. Several 
of these sheets associate to form a beta propeller structure 
as found in pfam00064, pfam00400 and pfam00415.
Length=46

 Score = 61.5 bits (150),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (55%), Gaps = 0/42 (0%)

Query  298  ARTNHTMVSFNDKLYLFGGTNGLQWFNDVWSYDPRANQWSQL  339
             R+   +V    K+Y+ GG +G Q  N V  YDP  N WS+L
Sbjct  1    RRSGAGVVVVGGKIYVIGGFDGNQSLNSVEVYDPETNTWSKL  42



Lambda      K        H        a         alpha
   0.309    0.125    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1895675914


Query= TCONS_00017124

Length=1354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396078 pfam01344, Kelch_1, Kelch motif. The kelch motif was i...  61.5    2e-12


>CDD:396078 pfam01344, Kelch_1, Kelch motif.  The kelch motif was initially 
discovered in Kelch. In this protein there are six copies 
of the motif. It has been shown that the ring canal kelch protein 
is related to Galactose Oxidase for which a structure 
has been solved. The kelch motif forms a beta sheet. Several 
of these sheets associate to form a beta propeller structure 
as found in pfam00064, pfam00400 and pfam00415.
Length=46

 Score = 61.5 bits (150),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (55%), Gaps = 0/42 (0%)

Query  156  ARTNHTMVSFNDKLYLFGGTNGLQWFNDVWSYDPRANQWSQL  197
             R+   +V    K+Y+ GG +G Q  N V  YDP  N WS+L
Sbjct  1    RRSGAGVVVVGGKIYVIGGFDGNQSLNSVEVYDPETNTWSKL  42



Lambda      K        H        a         alpha
   0.310    0.125    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1729009600


Query= TCONS_00010423

Length=1496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396078 pfam01344, Kelch_1, Kelch motif. The kelch motif was i...  61.5    2e-12


>CDD:396078 pfam01344, Kelch_1, Kelch motif.  The kelch motif was initially 
discovered in Kelch. In this protein there are six copies 
of the motif. It has been shown that the ring canal kelch protein 
is related to Galactose Oxidase for which a structure 
has been solved. The kelch motif forms a beta sheet. Several 
of these sheets associate to form a beta propeller structure 
as found in pfam00064, pfam00400 and pfam00415.
Length=46

 Score = 61.5 bits (150),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (55%), Gaps = 0/42 (0%)

Query  298  ARTNHTMVSFNDKLYLFGGTNGLQWFNDVWSYDPRANQWSQL  339
             R+   +V    K+Y+ GG +G Q  N V  YDP  N WS+L
Sbjct  1    RRSGAGVVVVGGKIYVIGGFDGNQSLNSVEVYDPETNTWSKL  42



Lambda      K        H        a         alpha
   0.309    0.125    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1895675914


Query= TCONS_00010424

Length=374


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00017125

Length=1136


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1450691282


Query= TCONS_00010426

Length=374


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0768    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00010425

Length=402


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00010428

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00010427

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00010429

Length=374


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00010430

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00017127

Length=374


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00017126

Length=402


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00017128

Length=402


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00010431

Length=374


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00010432

Length=320


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00010434

Length=383


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00010433

Length=383


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00010435

Length=414


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00017129

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00010437

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00010438

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395118 pfam00170, bZIP_1, bZIP transcription factor. The Pfam...  59.7    1e-12


>CDD:395118 pfam00170, bZIP_1, bZIP transcription factor.  The Pfam entry 
includes the basic region and the leucine zipper region.
Length=60

 Score = 59.7 bits (145),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 26/57 (46%), Positives = 39/57 (68%), Gaps = 0/57 (0%)

Query  122  KRKAQNRAAQRAFRERKERHVRELEEKVSALEQESTTLAADNERLKRELAKFATENE  178
            KRK  NR A R  R+RK+ ++ ELE +V ALE E+ TL ++ E LK+E+ K  ++N+
Sbjct  4    KRKQSNREAARRSRQRKQAYIEELERRVKALEGENKTLRSELEELKKEVEKLKSKNK  60



Lambda      K        H        a         alpha
   0.311    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00010439

Length=736
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  296     2e-92
CDD:462588 pfam08752, COP-gamma_platf, Coatomer gamma subunit app...  256     2e-82


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 296 bits (759),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 130/435 (30%), Positives = 205/435 (47%), Gaps = 34/435 (8%)

Query  6    ATTVQGIERLIKTAIVDKTPSVSSAALVSSYHLLPIARDVVRRWQSETQEAASASKSSTG  65
                + +   IK  +VD++P V   A ++   L   + D+VR +  E +E  S       
Sbjct  109  PELARDLAPDIKKLLVDRSPYVRKKAALAILKLYRKSPDLVRDFVPELKELLSDK-----  163

Query  66   FLGFGGSSSSHAISQSNFMTQYHAIGLLYQMRSHDRMALVKMVQQY----GAAGVVKSPA  121
                            +   Q  A+ LLY++  +DR+ L K++            V +P 
Sbjct  164  ----------------DPGVQSAAVALLYEICKNDRLYL-KLLPLLFRRLCNLLGVLNPW  206

Query  122  ALVLLVRLAAKLAEEDPGLRKPMMQMLDGWLRHKHEMVNFEAAKAICNMRDVTDAEASQA  181
              V ++RL  +LA  DP L K +++ L   L++ +  V +E A  I ++    +     A
Sbjct  207  LQVKILRLLTRLAPLDPLLPKELLEDLLNLLQNSNNAVLYETANTIVHLAPAPEL-IVLA  265

Query  182  VHVLQLFLSSPRAITKFAAIRILHNFASFKPHVVNVCNPDIESLISNSNRSIATFAITTL  241
            V+ L   LSSP    ++ A+R L+     +P  V   +  I  L ++ + SI   A+  L
Sbjct  266  VNALGRLLSSPDENLRYVALRNLNKIVMKEPKAVQHLDLIIFCLKTDDDISIRLRALDLL  325

Query  242  LKTGNEASVDRLMKQISGFMADITD-EFKITIVEAIRTLCLKFPSKQAGMLAFLSGILRD  300
                NE++V  ++K++  ++ +I D +FKI +V AI  L  KFP+     L  L  +L  
Sbjct  326  YALVNESNVKEIVKELLKYVHEIADPDFKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSL  385

Query  301  EGGYEFKRSVVESMFDLIKFVPESKEDALAHLCEFIEDCEFTKLSVRILHLLGVEGPKTS  360
             G Y     +VE + D+I+ VPE +E  L HLCE +ED E  +     L +LG  G    
Sbjct  386  AGSY-VVDEIVEVIRDIIQNVPELREYILEHLCELLEDIESPEALAAALWILGEYGELIP  444

Query  361  H---PTKYIRYIYNRVVLENAIVRAAAVTALAKFGVGQKDPEVKSSVSVLLTRC--LDDT  415
            +   P   +R I    VLE+A VRAAA+TALAK G+   +   ++ +  LL      D  
Sbjct  445  NGSSPPDLLRSILEVFVLESAKVRAAALTALAKLGLTSPEETTQNLIIQLLLTLATQDSL  504

Query  416  DDEVRDRAALNLRLM  430
            D EVRDRA   LRL+
Sbjct  505  DLEVRDRAVEYLRLL  519


>CDD:462588 pfam08752, COP-gamma_platf, Coatomer gamma subunit appendage 
platform subdomain.  COPI-coated vesicles function in retrograde 
transport from the Golgi to the ER, and in intra-Golgi 
transport. This is the platform subdomain of the coatomer gamma 
subunit appendage domain. It carries a protein-protein interaction 
site at UniProt:P53620, residue W776, which in yeast 
binds to the ARFGAP Glo3p, and in mammalian gamma-COP binds 
to a Glo3p orthologue, ARFGAP2.
Length=149

 Score = 256 bits (657),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 98/151 (65%), Positives = 117/151 (77%), Gaps = 3/151 (2%)

Query  526  QKYAEQLMQIPELKAYGTLLKSSVPVELTESETEYVVTAVKHVFKEHIVVQYDIKNTLPD  585
            QKYAEQL  IPE  + G L KSS PVELTESETEYVV+ VKH+FKEHIV+Q++IKNTL D
Sbjct  1    QKYAEQLAAIPEFASLGPLFKSSKPVELTESETEYVVSCVKHIFKEHIVLQFNIKNTLND  60

Query  586  TVLEDVTVVATPSEEEVLEEEFIVPAPKLAANEPGIVYVTFKKLSGEHSFPVTS-FTNIL  644
             VLE+V+VV  PS  E  E+ FI+P P L  NEPG VYV+F++   E  + V+  F+N L
Sbjct  61   QVLENVSVVMEPS--EEFEDVFIIPIPSLPPNEPGSVYVSFERPDPEEEYLVSGTFSNTL  118

Query  645  KFTSKEIDPSSGEPEDSGYEDEYQVEDLELT  675
            KFT KEIDPS+GEPE+ GYEDEYQ+EDLELT
Sbjct  119  KFTVKEIDPSTGEPEEEGYEDEYQLEDLELT  149



Lambda      K        H        a         alpha
   0.316    0.130    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 934207584


Query= TCONS_00010440

Length=916
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  386     4e-125
CDD:462588 pfam08752, COP-gamma_platf, Coatomer gamma subunit app...  258     1e-81 
CDD:406717 pfam16381, Coatomer_g_Cpla, Coatomer subunit gamma-1 C...  133     2e-37 


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 386 bits (995),  Expect = 4e-125, Method: Composition-based stats.
 Identities = 166/549 (30%), Positives = 262/549 (48%), Gaps = 42/549 (8%)

Query  18   DRTSVFQD-ARLFNSSPISPRRCRTLLTKIAVLMFTGEQFPTNEATTLFFGISKLFQNKD  76
            +   + Q+ AR+ NS    PR+ +  + K+  L+  GE         LFF + KL  +KD
Sbjct  1    EEKRIQQELARILNSFRDDPRKKKNAVKKLLYLIMLGEDISF-----LFFEVVKLVASKD  55

Query  77   PSLRQMVYLILKELANTAEDV-IMSTSIIMKDTAVGSDILYRANAIRALCRIIDATTVQG  135
             +L+++ YL L  LA  + D+ I+ T+ I KD     + L R  A+R L  I      + 
Sbjct  56   FTLKRLGYLYLMLLAEESPDLAILVTNSIQKD-LQSPNQLIRGLALRTLSCIRVPELARD  114

Query  136  IERLIKTAIVDKTPSVSSAALVSSYHLLPIARDVVRRWQSETQEAASASKSSTGFLGFGG  195
            +   IK  +VD++P V   A ++   L   + D+VR +  E +E  S             
Sbjct  115  LAPDIKKLLVDRSPYVRKKAALAILKLYRKSPDLVRDFVPELKELLSDK-----------  163

Query  196  SSSSHAISQSNFMTQYHAIGLLYQMRSHDRMALVKMVQQY----GAAGVVKSPAALVLLV  251
                      +   Q  A+ LLY++  +DR+ L K++            V +P   V ++
Sbjct  164  ----------DPGVQSAAVALLYEICKNDRLYL-KLLPLLFRRLCNLLGVLNPWLQVKIL  212

Query  252  RLAAKLAEEDPGLRKPMMQMLDGWLRHKHEMVNFEAAKAICNMRDVTDAEASQAVHVLQL  311
            RL  +LA  DP L K +++ L   L++ +  V +E A  I ++    +     AV+ L  
Sbjct  213  RLLTRLAPLDPLLPKELLEDLLNLLQNSNNAVLYETANTIVHLAPAPEL-IVLAVNALGR  271

Query  312  FLSSPRAITKFAAIRILHNFASFKPHVVNVCNPDIESLISNSNRSIATFAITTLLKTGNE  371
             LSSP    ++ A+R L+     +P  V   +  I  L ++ + SI   A+  L    NE
Sbjct  272  LLSSPDENLRYVALRNLNKIVMKEPKAVQHLDLIIFCLKTDDDISIRLRALDLLYALVNE  331

Query  372  ASVDRLMKQISGFMADITD-EFKITIVEAIRTLCLKFPSKQAGMLAFLSGILRDEGGYEF  430
            ++V  ++K++  ++ +I D +FKI +V AI  L  KFP+     L  L  +L   G Y  
Sbjct  332  SNVKEIVKELLKYVHEIADPDFKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSY-V  390

Query  431  KRSVVESMFDLIKFVPESKEDALAHLCEFIEDCEFTKLSVRILHLLGVEGPKTSH---PT  487
               +VE + D+I+ VPE +E  L HLCE +ED E  +     L +LG  G    +   P 
Sbjct  391  VDEIVEVIRDIIQNVPELREYILEHLCELLEDIESPEALAAALWILGEYGELIPNGSSPP  450

Query  488  KYIRYIYNRVVLENAIVRAAAVTALAKFGVGQKDPEVKSSVSVLLTRC--LDDTDDEVRD  545
              +R I    VLE+A VRAAA+TALAK G+   +   ++ +  LL      D  D EVRD
Sbjct  451  DLLRSILEVFVLESAKVRAAALTALAKLGLTSPEETTQNLIIQLLLTLATQDSLDLEVRD  510

Query  546  RAALNLRLM  554
            RA   LRL+
Sbjct  511  RAVEYLRLL  519


>CDD:462588 pfam08752, COP-gamma_platf, Coatomer gamma subunit appendage 
platform subdomain.  COPI-coated vesicles function in retrograde 
transport from the Golgi to the ER, and in intra-Golgi 
transport. This is the platform subdomain of the coatomer gamma 
subunit appendage domain. It carries a protein-protein interaction 
site at UniProt:P53620, residue W776, which in yeast 
binds to the ARFGAP Glo3p, and in mammalian gamma-COP binds 
to a Glo3p orthologue, ARFGAP2.
Length=149

 Score = 258 bits (661),  Expect = 1e-81, Method: Composition-based stats.
 Identities = 98/151 (65%), Positives = 117/151 (77%), Gaps = 3/151 (2%)

Query  650  QKYAEQLMQIPELKAYGTLLKSSVPVELTESETEYVVTAVKHVFKEHIVVQYDIKNTLPD  709
            QKYAEQL  IPE  + G L KSS PVELTESETEYVV+ VKH+FKEHIV+Q++IKNTL D
Sbjct  1    QKYAEQLAAIPEFASLGPLFKSSKPVELTESETEYVVSCVKHIFKEHIVLQFNIKNTLND  60

Query  710  TVLEDVTVVATPSEEEVLEEEFIVPAPKLAANEPGIVYVTFKKLSGEHSFPVTS-FTNIL  768
             VLE+V+VV  PS  E  E+ FI+P P L  NEPG VYV+F++   E  + V+  F+N L
Sbjct  61   QVLENVSVVMEPS--EEFEDVFIIPIPSLPPNEPGSVYVSFERPDPEEEYLVSGTFSNTL  118

Query  769  KFTSKEIDPSSGEPEDSGYEDEYQVEDLELT  799
            KFT KEIDPS+GEPE+ GYEDEYQ+EDLELT
Sbjct  119  KFTVKEIDPSTGEPEEEGYEDEYQLEDLELT  149


>CDD:406717 pfam16381, Coatomer_g_Cpla, Coatomer subunit gamma-1 C-terminal 
appendage platform.  Coatomer_g_Cpla is the very C-terminal 
domain of the eukaryotic Coatomer subunit gamma-1 proteins. 
It acts as a platform domain to the C-terminal appendage. 
It carries one single protein/protein interaction site, which 
is the binding site for ARFGAP2 or ADP-ribosylation factor 
GTPase-activating protein. COPI-coated vesicles mediate retrograde 
transport from the Golgi back to the ER and intra-Golgi 
transport. The gamma-COPI is part of one of two subcomplexes 
that make up the heptameric coatomer complex along with 
the beta, delta and zeta subunits.
Length=114

 Score = 133 bits (338),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 51/116 (44%), Positives = 76/116 (66%), Gaps = 3/116 (3%)

Query  801  SDYVIPTFAGSFDHVWEQTGANGEEVSETLQLSNMKNISDATEQLITALSLQPLEGSDMA  860
             DY+ P F G+F   W++  + GE   ET  LS++K++ +A ++LI  L +QPLEGSD+ 
Sbjct  1    GDYIQPVFVGNFAAAWDELPSEGEAS-ETFALSSVKSLQEAVDKLIELLGMQPLEGSDVV  59

Query  861  LSNST-HTLKLFGKTVSGGRVAALIKMAFSSKTGVTTKITIRAEEEGVAPAVMAAL  915
              N++ HTLKL GK V GG+V    ++A SS  GVT K+T+R+E E V   V++A+
Sbjct  60   PENASSHTLKLSGKFVGGGKVLVRARLAISSG-GVTMKLTVRSESEEVCELVLSAV  114



Lambda      K        H        a         alpha
   0.317    0.130    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1178556994


Query= TCONS_00010441

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  378     4e-126


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 378 bits (974),  Expect = 4e-126, Method: Composition-based stats.
 Identities = 166/549 (30%), Positives = 262/549 (48%), Gaps = 42/549 (8%)

Query  18   DRTSVFQD-ARLFNSSPISPRRCRTLLTKIAVLMFTGEQFPTNEATTLFFGISKLFQNKD  76
            +   + Q+ AR+ NS    PR+ +  + K+  L+  GE         LFF + KL  +KD
Sbjct  1    EEKRIQQELARILNSFRDDPRKKKNAVKKLLYLIMLGEDISF-----LFFEVVKLVASKD  55

Query  77   PSLRQMVYLILKELANTAEDV-IMSTSIIMKDTAVGSDILYRANAIRALCRIIDATTVQG  135
             +L+++ YL L  LA  + D+ I+ T+ I KD     + L R  A+R L  I      + 
Sbjct  56   FTLKRLGYLYLMLLAEESPDLAILVTNSIQKD-LQSPNQLIRGLALRTLSCIRVPELARD  114

Query  136  IERLIKTAIVDKTPSVSSAALVSSYHLLPIARDVVRRWQSETQEAASASKSSTGFLGFGG  195
            +   IK  +VD++P V   A ++   L   + D+VR +  E +E  S             
Sbjct  115  LAPDIKKLLVDRSPYVRKKAALAILKLYRKSPDLVRDFVPELKELLSDK-----------  163

Query  196  SSSSHAISQSNFMTQYHAIGLLYQMRSHDRMALVKMVQQY----GAAGVVKSPAALVLLV  251
                      +   Q  A+ LLY++  +DR+ L K++            V +P   V ++
Sbjct  164  ----------DPGVQSAAVALLYEICKNDRLYL-KLLPLLFRRLCNLLGVLNPWLQVKIL  212

Query  252  RLAAKLAEEDPGLRKPMMQMLDGWLRHKHEMVNFEAAKAICNMRDVTDAEASQAVHVLQL  311
            RL  +LA  DP L K +++ L   L++ +  V +E A  I ++    +     AV+ L  
Sbjct  213  RLLTRLAPLDPLLPKELLEDLLNLLQNSNNAVLYETANTIVHLAPAPEL-IVLAVNALGR  271

Query  312  FLSSPRAITKFAAIRILHNFASFKPHVVNVCNPDIESLISNSNRSIATFAITTLLKTGNE  371
             LSSP    ++ A+R L+     +P  V   +  I  L ++ + SI   A+  L    NE
Sbjct  272  LLSSPDENLRYVALRNLNKIVMKEPKAVQHLDLIIFCLKTDDDISIRLRALDLLYALVNE  331

Query  372  ASVDRLMKQISGFMADITD-EFKITIVEAIRTLCLKFPSKQAGMLAFLSGILRDEGGYEF  430
            ++V  ++K++  ++ +I D +FKI +V AI  L  KFP+     L  L  +L   G Y  
Sbjct  332  SNVKEIVKELLKYVHEIADPDFKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSY-V  390

Query  431  KRSVVESMFDLIKFVPESKEDALAHLCEFIEDCEFTKLSVRILHLLGVEGPKTSH---PT  487
               +VE + D+I+ VPE +E  L HLCE +ED E  +     L +LG  G    +   P 
Sbjct  391  VDEIVEVIRDIIQNVPELREYILEHLCELLEDIESPEALAAALWILGEYGELIPNGSSPP  450

Query  488  KYIRYIYNRVVLENAIVRAAAVTALAKFGVGQKDPEVKSSVSVLLTRC--LDDTDDEVRD  545
              +R I    VLE+A VRAAA+TALAK G+   +   ++ +  LL      D  D EVRD
Sbjct  451  DLLRSILEVFVLESAKVRAAALTALAKLGLTSPEETTQNLIIQLLLTLATQDSLDLEVRD  510

Query  546  RAALNLRLM  554
            RA   LRL+
Sbjct  511  RAVEYLRLL  519



Lambda      K        H        a         alpha
   0.321    0.133    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 723303152


Query= TCONS_00017130

Length=792
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  296     6e-92
CDD:462588 pfam08752, COP-gamma_platf, Coatomer gamma subunit app...  257     4e-82
CDD:406717 pfam16381, Coatomer_g_Cpla, Coatomer subunit gamma-1 C...  133     3e-37


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 296 bits (760),  Expect = 6e-92, Method: Composition-based stats.
 Identities = 130/435 (30%), Positives = 205/435 (47%), Gaps = 34/435 (8%)

Query  6    ATTVQGIERLIKTAIVDKTPSVSSAALVSSYHLLPIARDVVRRWQSETQEAASASKSSTG  65
                + +   IK  +VD++P V   A ++   L   + D+VR +  E +E  S       
Sbjct  109  PELARDLAPDIKKLLVDRSPYVRKKAALAILKLYRKSPDLVRDFVPELKELLSDK-----  163

Query  66   FLGFGGSSSSHAISQSNFMTQYHAIGLLYQMRSHDRMALVKMVQQY----GAAGVVKSPA  121
                            +   Q  A+ LLY++  +DR+ L K++            V +P 
Sbjct  164  ----------------DPGVQSAAVALLYEICKNDRLYL-KLLPLLFRRLCNLLGVLNPW  206

Query  122  ALVLLVRLAAKLAEEDPGLRKPMMQMLDGWLRHKHEMVNFEAAKAICNMRDVTDAEASQA  181
              V ++RL  +LA  DP L K +++ L   L++ +  V +E A  I ++    +     A
Sbjct  207  LQVKILRLLTRLAPLDPLLPKELLEDLLNLLQNSNNAVLYETANTIVHLAPAPEL-IVLA  265

Query  182  VHVLQLFLSSPRAITKFAAIRILHNFASFKPHVVNVCNPDIESLISNSNRSIATFAITTL  241
            V+ L   LSSP    ++ A+R L+     +P  V   +  I  L ++ + SI   A+  L
Sbjct  266  VNALGRLLSSPDENLRYVALRNLNKIVMKEPKAVQHLDLIIFCLKTDDDISIRLRALDLL  325

Query  242  LKTGNEASVDRLMKQISGFMADITD-EFKITIVEAIRTLCLKFPSKQAGMLAFLSGILRD  300
                NE++V  ++K++  ++ +I D +FKI +V AI  L  KFP+     L  L  +L  
Sbjct  326  YALVNESNVKEIVKELLKYVHEIADPDFKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSL  385

Query  301  EGGYEFKRSVVESMFDLIKFVPESKEDALAHLCEFIEDCEFTKLSVRILHLLGVEGPKTS  360
             G Y     +VE + D+I+ VPE +E  L HLCE +ED E  +     L +LG  G    
Sbjct  386  AGSY-VVDEIVEVIRDIIQNVPELREYILEHLCELLEDIESPEALAAALWILGEYGELIP  444

Query  361  H---PTKYIRYIYNRVVLENAIVRAAAVTALAKFGVGQKDPEVKSSVSVLLTRC--LDDT  415
            +   P   +R I    VLE+A VRAAA+TALAK G+   +   ++ +  LL      D  
Sbjct  445  NGSSPPDLLRSILEVFVLESAKVRAAALTALAKLGLTSPEETTQNLIIQLLLTLATQDSL  504

Query  416  DDEVRDRAALNLRLM  430
            D EVRDRA   LRL+
Sbjct  505  DLEVRDRAVEYLRLL  519


>CDD:462588 pfam08752, COP-gamma_platf, Coatomer gamma subunit appendage 
platform subdomain.  COPI-coated vesicles function in retrograde 
transport from the Golgi to the ER, and in intra-Golgi 
transport. This is the platform subdomain of the coatomer gamma 
subunit appendage domain. It carries a protein-protein interaction 
site at UniProt:P53620, residue W776, which in yeast 
binds to the ARFGAP Glo3p, and in mammalian gamma-COP binds 
to a Glo3p orthologue, ARFGAP2.
Length=149

 Score = 257 bits (658),  Expect = 4e-82, Method: Composition-based stats.
 Identities = 98/151 (65%), Positives = 117/151 (77%), Gaps = 3/151 (2%)

Query  526  QKYAEQLMQIPELKAYGTLLKSSVPVELTESETEYVVTAVKHVFKEHIVVQYDIKNTLPD  585
            QKYAEQL  IPE  + G L KSS PVELTESETEYVV+ VKH+FKEHIV+Q++IKNTL D
Sbjct  1    QKYAEQLAAIPEFASLGPLFKSSKPVELTESETEYVVSCVKHIFKEHIVLQFNIKNTLND  60

Query  586  TVLEDVTVVATPSEEEVLEEEFIVPAPKLAANEPGIVYVTFKKLSGEHSFPVTS-FTNIL  644
             VLE+V+VV  PS  E  E+ FI+P P L  NEPG VYV+F++   E  + V+  F+N L
Sbjct  61   QVLENVSVVMEPS--EEFEDVFIIPIPSLPPNEPGSVYVSFERPDPEEEYLVSGTFSNTL  118

Query  645  KFTSKEIDPSSGEPEDSGYEDEYQVEDLELT  675
            KFT KEIDPS+GEPE+ GYEDEYQ+EDLELT
Sbjct  119  KFTVKEIDPSTGEPEEEGYEDEYQLEDLELT  149


>CDD:406717 pfam16381, Coatomer_g_Cpla, Coatomer subunit gamma-1 C-terminal 
appendage platform.  Coatomer_g_Cpla is the very C-terminal 
domain of the eukaryotic Coatomer subunit gamma-1 proteins. 
It acts as a platform domain to the C-terminal appendage. 
It carries one single protein/protein interaction site, which 
is the binding site for ARFGAP2 or ADP-ribosylation factor 
GTPase-activating protein. COPI-coated vesicles mediate retrograde 
transport from the Golgi back to the ER and intra-Golgi 
transport. The gamma-COPI is part of one of two subcomplexes 
that make up the heptameric coatomer complex along with 
the beta, delta and zeta subunits.
Length=114

 Score = 133 bits (336),  Expect = 3e-37, Method: Composition-based stats.
 Identities = 51/116 (44%), Positives = 76/116 (66%), Gaps = 3/116 (3%)

Query  677  SDYVIPTFAGSFDHVWEQTGANGEEVSETLQLSNMKNISDATEQLITALSLQPLEGSDMA  736
             DY+ P F G+F   W++  + GE   ET  LS++K++ +A ++LI  L +QPLEGSD+ 
Sbjct  1    GDYIQPVFVGNFAAAWDELPSEGEAS-ETFALSSVKSLQEAVDKLIELLGMQPLEGSDVV  59

Query  737  LSNST-HTLKLFGKTVSGGRVAALIKMAFSSKTGVTTKITIRAEEEGVAPAVMAAL  791
              N++ HTLKL GK V GG+V    ++A SS  GVT K+T+R+E E V   V++A+
Sbjct  60   PENASSHTLKLSGKFVGGGKVLVRARLAISSG-GVTMKLTVRSESEEVCELVLSAV  114



Lambda      K        H        a         alpha
   0.315    0.129    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1015696096


Query= TCONS_00017131

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  288     2e-92


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 288 bits (739),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 123/440 (28%), Positives = 206/440 (47%), Gaps = 37/440 (8%)

Query  18   DRTSVFQD-ARLFNSSPISPRRCRTLLTKIAVLMFTGEQFPTNEATTLFFGISKLFQNKD  76
            +   + Q+ AR+ NS    PR+ +  + K+  L+  GE         LFF + KL  +KD
Sbjct  1    EEKRIQQELARILNSFRDDPRKKKNAVKKLLYLIMLGEDISF-----LFFEVVKLVASKD  55

Query  77   PSLRQMVYLILKELANTAEDV-IMSTSIIMKDTAVGSDILYRANAIRALCRIIDATTVQG  135
             +L+++ YL L  LA  + D+ I+ T+ I KD     + L R  A+R L  I      + 
Sbjct  56   FTLKRLGYLYLMLLAEESPDLAILVTNSIQKD-LQSPNQLIRGLALRTLSCIRVPELARD  114

Query  136  IERLIKTAIVDKTPSVSSAALVSSYHLLPIARDVVRRWQSETQEAASASKSSTGFLGFGG  195
            +   IK  +VD++P V   A ++   L   + D+VR +  E +E  S             
Sbjct  115  LAPDIKKLLVDRSPYVRKKAALAILKLYRKSPDLVRDFVPELKELLSDK-----------  163

Query  196  SSSSHAISQSNFMTQYHAIGLLYQMRSHDRMALVKMVQQY----GAAGVVKSPAALVLLV  251
                      +   Q  A+ LLY++  +DR+ L K++            V +P   V ++
Sbjct  164  ----------DPGVQSAAVALLYEICKNDRLYL-KLLPLLFRRLCNLLGVLNPWLQVKIL  212

Query  252  RLAAKLAEEDPGLRKPMMQMLDGWLRHKHEMVNFEAAKAICNMRDVTDAEASQAVHVLQL  311
            RL  +LA  DP L K +++ L   L++ +  V +E A  I ++    +     AV+ L  
Sbjct  213  RLLTRLAPLDPLLPKELLEDLLNLLQNSNNAVLYETANTIVHLAPAPEL-IVLAVNALGR  271

Query  312  FLSSPRAITKFAAIRILHNFASFKPHVVNVCNPDIESLISNSNRSIATFAITTLLKTGNE  371
             LSSP    ++ A+R L+     +P  V   +  I  L ++ + SI   A+  L    NE
Sbjct  272  LLSSPDENLRYVALRNLNKIVMKEPKAVQHLDLIIFCLKTDDDISIRLRALDLLYALVNE  331

Query  372  ASVDRLMKQISGFMADITD-EFKITIVEAIRTLCLKFPSKQAGMLAFLSGILRDEGGYEF  430
            ++V  ++K++  ++ +I D +FKI +V AI  L  KFP+     L  L  +L   G Y  
Sbjct  332  SNVKEIVKELLKYVHEIADPDFKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSY-V  390

Query  431  KRSVVESMFDLIKFVPESKE  450
               +VE + D+I+ VPE +E
Sbjct  391  VDEIVEVIRDIIQNVPELRE  410



Lambda      K        H        a         alpha
   0.321    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593543448


Query= TCONS_00010442

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  199     4e-60


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 199 bits (509),  Expect = 4e-60, Method: Composition-based stats.
 Identities = 87/326 (27%), Positives = 149/326 (46%), Gaps = 29/326 (9%)

Query  6    ATTVQGIERLIKTAIVDKTPSVSSAALVSSYHLLPIARDVVRRWQSETQEAASASKSSTG  65
                + +   IK  +VD++P V   A ++   L   + D+VR +  E +E  S       
Sbjct  109  PELARDLAPDIKKLLVDRSPYVRKKAALAILKLYRKSPDLVRDFVPELKELLSDK-----  163

Query  66   FLGFGGSSSSHAISQSNFMTQYHAIGLLYQMRSHDRMALVKMVQQY----GAAGVVKSPA  121
                            +   Q  A+ LLY++  +DR+ L K++            V +P 
Sbjct  164  ----------------DPGVQSAAVALLYEICKNDRLYL-KLLPLLFRRLCNLLGVLNPW  206

Query  122  ALVLLVRLAAKLAEEDPGLRKPMMQMLDGWLRHKHEMVNFEAAKAICNMRDVTDAEASQA  181
              V ++RL  +LA  DP L K +++ L   L++ +  V +E A  I ++    +     A
Sbjct  207  LQVKILRLLTRLAPLDPLLPKELLEDLLNLLQNSNNAVLYETANTIVHLAPAPEL-IVLA  265

Query  182  VHVLQLFLSSPRAITKFAAIRILHNFASFKPHVVNVCNPDIESLISNSNRSIATFAITTL  241
            V+ L   LSSP    ++ A+R L+     +P  V   +  I  L ++ + SI   A+  L
Sbjct  266  VNALGRLLSSPDENLRYVALRNLNKIVMKEPKAVQHLDLIIFCLKTDDDISIRLRALDLL  325

Query  242  LKTGNEASVDRLMKQISGFMADITD-EFKITIVEAIRTLCLKFPSKQAGMLAFLSGILRD  300
                NE++V  ++K++  ++ +I D +FKI +V AI  L  KFP+     L  L  +L  
Sbjct  326  YALVNESNVKEIVKELLKYVHEIADPDFKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSL  385

Query  301  EGGYEFKRSVVESMFDLIKFVPESKE  326
             G Y     +VE + D+I+ VPE +E
Sbjct  386  AGSY-VVDEIVEVIRDIIQNVPELRE  410



Lambda      K        H        a         alpha
   0.320    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00010443

Length=886
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  385     6e-125
CDD:462588 pfam08752, COP-gamma_platf, Coatomer gamma subunit app...  257     9e-82 
CDD:406717 pfam16381, Coatomer_g_Cpla, Coatomer subunit gamma-1 C...  64.9    3e-13 


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 385 bits (991),  Expect = 6e-125, Method: Composition-based stats.
 Identities = 166/549 (30%), Positives = 262/549 (48%), Gaps = 42/549 (8%)

Query  18   DRTSVFQD-ARLFNSSPISPRRCRTLLTKIAVLMFTGEQFPTNEATTLFFGISKLFQNKD  76
            +   + Q+ AR+ NS    PR+ +  + K+  L+  GE         LFF + KL  +KD
Sbjct  1    EEKRIQQELARILNSFRDDPRKKKNAVKKLLYLIMLGEDISF-----LFFEVVKLVASKD  55

Query  77   PSLRQMVYLILKELANTAEDV-IMSTSIIMKDTAVGSDILYRANAIRALCRIIDATTVQG  135
             +L+++ YL L  LA  + D+ I+ T+ I KD     + L R  A+R L  I      + 
Sbjct  56   FTLKRLGYLYLMLLAEESPDLAILVTNSIQKD-LQSPNQLIRGLALRTLSCIRVPELARD  114

Query  136  IERLIKTAIVDKTPSVSSAALVSSYHLLPIARDVVRRWQSETQEAASASKSSTGFLGFGG  195
            +   IK  +VD++P V   A ++   L   + D+VR +  E +E  S             
Sbjct  115  LAPDIKKLLVDRSPYVRKKAALAILKLYRKSPDLVRDFVPELKELLSDK-----------  163

Query  196  SSSSHAISQSNFMTQYHAIGLLYQMRSHDRMALVKMVQQY----GAAGVVKSPAALVLLV  251
                      +   Q  A+ LLY++  +DR+ L K++            V +P   V ++
Sbjct  164  ----------DPGVQSAAVALLYEICKNDRLYL-KLLPLLFRRLCNLLGVLNPWLQVKIL  212

Query  252  RLAAKLAEEDPGLRKPMMQMLDGWLRHKHEMVNFEAAKAICNMRDVTDAEASQAVHVLQL  311
            RL  +LA  DP L K +++ L   L++ +  V +E A  I ++    +     AV+ L  
Sbjct  213  RLLTRLAPLDPLLPKELLEDLLNLLQNSNNAVLYETANTIVHLAPAPEL-IVLAVNALGR  271

Query  312  FLSSPRAITKFAAIRILHNFASFKPHVVNVCNPDIESLISNSNRSIATFAITTLLKTGNE  371
             LSSP    ++ A+R L+     +P  V   +  I  L ++ + SI   A+  L    NE
Sbjct  272  LLSSPDENLRYVALRNLNKIVMKEPKAVQHLDLIIFCLKTDDDISIRLRALDLLYALVNE  331

Query  372  ASVDRLMKQISGFMADITD-EFKITIVEAIRTLCLKFPSKQAGMLAFLSGILRDEGGYEF  430
            ++V  ++K++  ++ +I D +FKI +V AI  L  KFP+     L  L  +L   G Y  
Sbjct  332  SNVKEIVKELLKYVHEIADPDFKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSY-V  390

Query  431  KRSVVESMFDLIKFVPESKEDALAHLCEFIEDCEFTKLSVRILHLLGVEGPKTSH---PT  487
               +VE + D+I+ VPE +E  L HLCE +ED E  +     L +LG  G    +   P 
Sbjct  391  VDEIVEVIRDIIQNVPELREYILEHLCELLEDIESPEALAAALWILGEYGELIPNGSSPP  450

Query  488  KYIRYIYNRVVLENAIVRAAAVTALAKFGVGQKDPEVKSSVSVLLTRC--LDDTDDEVRD  545
              +R I    VLE+A VRAAA+TALAK G+   +   ++ +  LL      D  D EVRD
Sbjct  451  DLLRSILEVFVLESAKVRAAALTALAKLGLTSPEETTQNLIIQLLLTLATQDSLDLEVRD  510

Query  546  RAALNLRLM  554
            RA   LRL+
Sbjct  511  RAVEYLRLL  519


>CDD:462588 pfam08752, COP-gamma_platf, Coatomer gamma subunit appendage 
platform subdomain.  COPI-coated vesicles function in retrograde 
transport from the Golgi to the ER, and in intra-Golgi 
transport. This is the platform subdomain of the coatomer gamma 
subunit appendage domain. It carries a protein-protein interaction 
site at UniProt:P53620, residue W776, which in yeast 
binds to the ARFGAP Glo3p, and in mammalian gamma-COP binds 
to a Glo3p orthologue, ARFGAP2.
Length=149

 Score = 257 bits (660),  Expect = 9e-82, Method: Composition-based stats.
 Identities = 98/151 (65%), Positives = 117/151 (77%), Gaps = 3/151 (2%)

Query  650  QKYAEQLMQIPELKAYGTLLKSSVPVELTESETEYVVTAVKHVFKEHIVVQYDIKNTLPD  709
            QKYAEQL  IPE  + G L KSS PVELTESETEYVV+ VKH+FKEHIV+Q++IKNTL D
Sbjct  1    QKYAEQLAAIPEFASLGPLFKSSKPVELTESETEYVVSCVKHIFKEHIVLQFNIKNTLND  60

Query  710  TVLEDVTVVATPSEEEVLEEEFIVPAPKLAANEPGIVYVTFKKLSGEHSFPVTS-FTNIL  768
             VLE+V+VV  PS  E  E+ FI+P P L  NEPG VYV+F++   E  + V+  F+N L
Sbjct  61   QVLENVSVVMEPS--EEFEDVFIIPIPSLPPNEPGSVYVSFERPDPEEEYLVSGTFSNTL  118

Query  769  KFTSKEIDPSSGEPEDSGYEDEYQVEDLELT  799
            KFT KEIDPS+GEPE+ GYEDEYQ+EDLELT
Sbjct  119  KFTVKEIDPSTGEPEEEGYEDEYQLEDLELT  149


>CDD:406717 pfam16381, Coatomer_g_Cpla, Coatomer subunit gamma-1 C-terminal 
appendage platform.  Coatomer_g_Cpla is the very C-terminal 
domain of the eukaryotic Coatomer subunit gamma-1 proteins. 
It acts as a platform domain to the C-terminal appendage. 
It carries one single protein/protein interaction site, which 
is the binding site for ARFGAP2 or ADP-ribosylation factor 
GTPase-activating protein. COPI-coated vesicles mediate retrograde 
transport from the Golgi back to the ER and intra-Golgi 
transport. The gamma-COPI is part of one of two subcomplexes 
that make up the heptameric coatomer complex along with 
the beta, delta and zeta subunits.
Length=114

 Score = 64.9 bits (159),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 26/85 (31%), Positives = 42/85 (49%), Gaps = 21/85 (25%)

Query  801  SDYVIPTFAGSFDHVWEQTGANGEEVSETLQLSNMKNISGASRIRRFNVNSIRYTDLTAD  860
             DY+ P F G+F   W++  + GE   ET  LS++K++                     +
Sbjct  1    GDYIQPVFVGNFAAAWDELPSEGEAS-ETFALSSVKSL--------------------QE  39

Query  861  ATEQLITALSLQPLEGSDMALSNST  885
            A ++LI  L +QPLEGSD+   N++
Sbjct  40   AVDKLIELLGMQPLEGSDVVPENAS  64



Lambda      K        H        a         alpha
   0.317    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1135491574


Query= TCONS_00010444

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  199     4e-60


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 199 bits (509),  Expect = 4e-60, Method: Composition-based stats.
 Identities = 87/326 (27%), Positives = 149/326 (46%), Gaps = 29/326 (9%)

Query  6    ATTVQGIERLIKTAIVDKTPSVSSAALVSSYHLLPIARDVVRRWQSETQEAASASKSSTG  65
                + +   IK  +VD++P V   A ++   L   + D+VR +  E +E  S       
Sbjct  109  PELARDLAPDIKKLLVDRSPYVRKKAALAILKLYRKSPDLVRDFVPELKELLSDK-----  163

Query  66   FLGFGGSSSSHAISQSNFMTQYHAIGLLYQMRSHDRMALVKMVQQY----GAAGVVKSPA  121
                            +   Q  A+ LLY++  +DR+ L K++            V +P 
Sbjct  164  ----------------DPGVQSAAVALLYEICKNDRLYL-KLLPLLFRRLCNLLGVLNPW  206

Query  122  ALVLLVRLAAKLAEEDPGLRKPMMQMLDGWLRHKHEMVNFEAAKAICNMRDVTDAEASQA  181
              V ++RL  +LA  DP L K +++ L   L++ +  V +E A  I ++    +     A
Sbjct  207  LQVKILRLLTRLAPLDPLLPKELLEDLLNLLQNSNNAVLYETANTIVHLAPAPEL-IVLA  265

Query  182  VHVLQLFLSSPRAITKFAAIRILHNFASFKPHVVNVCNPDIESLISNSNRSIATFAITTL  241
            V+ L   LSSP    ++ A+R L+     +P  V   +  I  L ++ + SI   A+  L
Sbjct  266  VNALGRLLSSPDENLRYVALRNLNKIVMKEPKAVQHLDLIIFCLKTDDDISIRLRALDLL  325

Query  242  LKTGNEASVDRLMKQISGFMADITD-EFKITIVEAIRTLCLKFPSKQAGMLAFLSGILRD  300
                NE++V  ++K++  ++ +I D +FKI +V AI  L  KFP+     L  L  +L  
Sbjct  326  YALVNESNVKEIVKELLKYVHEIADPDFKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSL  385

Query  301  EGGYEFKRSVVESMFDLIKFVPESKE  326
             G Y     +VE + D+I+ VPE +E
Sbjct  386  AGSY-VVDEIVEVIRDIIQNVPELRE  410



Lambda      K        H        a         alpha
   0.320    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0816    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00010445

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433132 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hyd...  112     6e-31
CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like               66.1    2e-14


>CDD:433132 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase. 
 This family is part of the HAD superfamily.
Length=101

 Score = 112 bits (282),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 41/109 (38%), Positives = 58/109 (53%), Gaps = 8/109 (7%)

Query  39   FAFDIDGVLLRSSKPIPGAAESLALLKDQGIPFILLTNGGGKHETERVAEISEKLKVPLD  98
            F FDIDGVL R  +PIPGAAE+L  L+  G P + +TN   +   E   ++  KL   +D
Sbjct  1    FLFDIDGVLWRGGEPIPGAAEALRALRAAGKPVVFVTNNSSRSREEYAEKL-RKLGFDID  59

Query  99   ASVIIQSHSPFAELVKGPDEHSSLEDKRVLVVGGDGDGCRRVAEQYGFK  147
               II S +  A+ +K          K+VLV+G   +G R   E+ GF+
Sbjct  60   EDEIITSGTAAADYLK-----ERKFGKKVLVIG--SEGLREELEEAGFE  101


>CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like.  
Length=75

 Score = 66.1 bits (162),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 26/93 (28%), Positives = 36/93 (39%), Gaps = 21/93 (23%)

Query  298  IIGKPYQGTYEFAERQLLRNRTEIFGTDGTKPLRNVYMVGDNPESDIRGANSYRSGNGSN  357
            + GKP  G  E A       R  +             M+GD  ++DI GA          
Sbjct  1    VCGKPNPGMLERA-----LARLGL-------DPERTVMIGDRLDTDILGAREA------G  42

Query  358  WHSILVRTGVYRGGE---PAWTPKVIVDDVKKA  387
              +ILV TGV R  +       P  +VDD+ +A
Sbjct  43   ARTILVLTGVTRPADLEKAPIRPDYVVDDLAEA  75



Lambda      K        H        a         alpha
   0.318    0.138    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00010446

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like               66.5    3e-15


>CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like.  
Length=75

 Score = 66.5 bits (163),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 26/93 (28%), Positives = 36/93 (39%), Gaps = 21/93 (23%)

Query  142  IIGKPYQGTYEFAERQLLRNRTEIFGTDGTKPLRNVYMVGDNPESDIRGANSYRSGNGSN  201
            + GKP  G  E A       R  +             M+GD  ++DI GA          
Sbjct  1    VCGKPNPGMLERA-----LARLGL-------DPERTVMIGDRLDTDILGAREA------G  42

Query  202  WHSILVRTGVYRGGE---PAWTPKVIVDDVKKA  231
              +ILV TGV R  +       P  +VDD+ +A
Sbjct  43   ARTILVLTGVTRPADLEKAPIRPDYVVDDLAEA  75



Lambda      K        H        a         alpha
   0.317    0.139    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00010449

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  268     2e-86


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 268 bits (688),  Expect = 2e-86, Method: Composition-based stats.
 Identities = 103/336 (31%), Positives = 155/336 (46%), Gaps = 29/336 (9%)

Query  223  TRLDNRVLDLQTETSQAITWISSGVAELFAEYMIKSGSRWIFTPKLVGAATEGGSNVFEV  282
            TRL  R LDL+    QA   + S + +    ++ ++G   + TP L  +AT  G+  F V
Sbjct  4    TRLKYRYLDLRRPKMQANLKLRSKIIKAIRNFLDENGFLEVETPILTKSATPEGARDFLV  63

Query  283  ------KYFKRNAYLAQSPQLYKQMCIAGDMESVFEIAPVFRAEDSNTHRHLTEFAGLDF  336
                  K++     L QSPQLYKQ+ +    + VF+IA  FR ED  T R   EF  LD 
Sbjct  64   PSRALGKFY----ALPQSPQLYKQLLMVAGFDRVFQIARCFRDEDLRTDRQP-EFTQLDL  118

Query  337  EKTFRSHYHEVLEFAENLLVFILSQLKERYKDQIAIIQKSYPKAGDFKLPKDGKALRLNY  396
            E +F   Y +V++  E L+  I  +++   K+             D K P      R+ Y
Sbjct  119  EMSFVD-YEDVMDLTEELIKEIFKEVEGIAKE------LEGGTLLDLKKP----FPRITY  167

Query  397  MDGVALLKEAGVDVSEQERFENDLTTAMEKQLGQIIRDKYDTDFYVLDKFPMAVRPFYTK  456
             + +  L    V     E           + L +++ DK   +   +  FP    PF   
Sbjct  168  AEAIEKLNGKDV-----EELGYGSDKPDLRFLLELVIDKNKFNPLWVTDFPAEHHPFTMP  222

Query  457  ACPQDPRFSNSYDFFMRGEEIMSGAQRINDIKELEESMIAKGLDPKQ--EGFEDYLAAFR  514
                DP  + ++D  + G EI  G+ RI+D +  EE    +GLDP++  E F  YL A +
Sbjct  223  KDEDDPALAEAFDLVLNGVEIGGGSIRIHDPELQEERFEEQGLDPEEAEEKFGFYLDALK  282

Query  515  QGCPPHAGGGLGLNRIVMFFLGLPNVRLASLFPRDP  550
             G PPH G G+GL+R+VM   GL ++R    FP+  
Sbjct  283  YGAPPHGGLGIGLDRLVMLLTGLESIREVIAFPKTR  318



Lambda      K        H        a         alpha
   0.316    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 691920164


Query= TCONS_00010447

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  112     2e-29


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 112 bits (283),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 39/112 (35%), Positives = 56/112 (50%), Gaps = 10/112 (9%)

Query  223  TRLDNRVLDLQTETSQAITWISSGVAELFAEYMIKSGSRWIFTPKLVGAATEGGSNVFEV  282
            TRL  R LDL+    QA   + S + +    ++ ++G   + TP L  +AT  G+  F V
Sbjct  4    TRLKYRYLDLRRPKMQANLKLRSKIIKAIRNFLDENGFLEVETPILTKSATPEGARDFLV  63

Query  283  ------KYFKRNAYLAQSPQLYKQMCIAGDMESVFEIAPVFRAEDSNTHRHL  328
                  K++     L QSPQLYKQ+ +    + VF+IA  FR ED  T R  
Sbjct  64   PSRALGKFY----ALPQSPQLYKQLLMVAGFDRVFQIARCFRDEDLRTDRQP  111



Lambda      K        H        a         alpha
   0.311    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00010448

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  268     2e-86


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 268 bits (688),  Expect = 2e-86, Method: Composition-based stats.
 Identities = 103/336 (31%), Positives = 155/336 (46%), Gaps = 29/336 (9%)

Query  223  TRLDNRVLDLQTETSQAITWISSGVAELFAEYMIKSGSRWIFTPKLVGAATEGGSNVFEV  282
            TRL  R LDL+    QA   + S + +    ++ ++G   + TP L  +AT  G+  F V
Sbjct  4    TRLKYRYLDLRRPKMQANLKLRSKIIKAIRNFLDENGFLEVETPILTKSATPEGARDFLV  63

Query  283  ------KYFKRNAYLAQSPQLYKQMCIAGDMESVFEIAPVFRAEDSNTHRHLTEFAGLDF  336
                  K++     L QSPQLYKQ+ +    + VF+IA  FR ED  T R   EF  LD 
Sbjct  64   PSRALGKFY----ALPQSPQLYKQLLMVAGFDRVFQIARCFRDEDLRTDRQP-EFTQLDL  118

Query  337  EKTFRSHYHEVLEFAENLLVFILSQLKERYKDQIAIIQKSYPKAGDFKLPKDGKALRLNY  396
            E +F   Y +V++  E L+  I  +++   K+             D K P      R+ Y
Sbjct  119  EMSFVD-YEDVMDLTEELIKEIFKEVEGIAKE------LEGGTLLDLKKP----FPRITY  167

Query  397  MDGVALLKEAGVDVSEQERFENDLTTAMEKQLGQIIRDKYDTDFYVLDKFPMAVRPFYTK  456
             + +  L    V     E           + L +++ DK   +   +  FP    PF   
Sbjct  168  AEAIEKLNGKDV-----EELGYGSDKPDLRFLLELVIDKNKFNPLWVTDFPAEHHPFTMP  222

Query  457  ACPQDPRFSNSYDFFMRGEEIMSGAQRINDIKELEESMIAKGLDPKQ--EGFEDYLAAFR  514
                DP  + ++D  + G EI  G+ RI+D +  EE    +GLDP++  E F  YL A +
Sbjct  223  KDEDDPALAEAFDLVLNGVEIGGGSIRIHDPELQEERFEEQGLDPEEAEEKFGFYLDALK  282

Query  515  QGCPPHAGGGLGLNRIVMFFLGLPNVRLASLFPRDP  550
             G PPH G G+GL+R+VM   GL ++R    FP+  
Sbjct  283  YGAPPHGGLGIGLDRLVMLLTGLESIREVIAFPKTR  318



Lambda      K        H        a         alpha
   0.316    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 691920164


Query= TCONS_00010450

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00010451

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00017132

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00017133

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00010452

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00017134

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00017135

Length=418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459940 pfam00787, PX, PX domain. PX domains bind to phosphoin...  68.4    4e-15


>CDD:459940 pfam00787, PX, PX domain.  PX domains bind to phosphoinositides.
Length=84

 Score = 68.4 bits (168),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 28/81 (35%), Positives = 39/81 (48%), Gaps = 4/81 (5%)

Query  32   LRSFTISKRYSDFVAFHTSLLNQTNAPPPAPLPGKHWFSNTVSNQVLREERRQGLESYLR  91
            L  +++ +RYSDFV  H  LL +  +    PLP K W      N+   E+RR+GLE YL+
Sbjct  6    LEEWSVRRRYSDFVELHKKLLRKFPSVIIPPLPPKRWLGRY--NEEFIEKRRKGLEQYLQ  63

Query  92   AINEADDPRWRTCSAWRAFLN  112
             +     P  R       FL 
Sbjct  64   RL--LQHPELRNSEVLLEFLE  82



Lambda      K        H        a         alpha
   0.313    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00010453

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00017136

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00010454

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459940 pfam00787, PX, PX domain. PX domains bind to phosphoin...  68.4    3e-15


>CDD:459940 pfam00787, PX, PX domain.  PX domains bind to phosphoinositides.
Length=84

 Score = 68.4 bits (168),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 28/81 (35%), Positives = 39/81 (48%), Gaps = 4/81 (5%)

Query  32   LRSFTISKRYSDFVAFHTSLLNQTNAPPPAPLPGKHWFSNTVSNQVLREERRQGLESYLR  91
            L  +++ +RYSDFV  H  LL +  +    PLP K W      N+   E+RR+GLE YL+
Sbjct  6    LEEWSVRRRYSDFVELHKKLLRKFPSVIIPPLPPKRWLGRY--NEEFIEKRRKGLEQYLQ  63

Query  92   AINEADDPRWRTCSAWRAFLN  112
             +     P  R       FL 
Sbjct  64   RL--LQHPELRNSEVLLEFLE  82



Lambda      K        H        a         alpha
   0.312    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00017137

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00010455

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00017138

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00010457

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463949 pfam13664, DUF4149, Domain of unknown function (DUF4149)   95.4    4e-26


>CDD:463949 pfam13664, DUF4149, Domain of unknown function (DUF4149).  
Length=102

 Score = 95.4 bits (238),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 39/96 (41%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query  72   QTFIGGVIAFRVLPRPQFSALQTSIFPVYFTLQSALPVVIALTSSKGGQLNGISGLLAPE  131
              F+   + FR LPR QF ALQ+ +FPVYF L  AL V++ LT    G     SGLL   
Sbjct  13   VGFVVAPVLFRALPRHQFGALQSKLFPVYFWLGLALAVLLLLTEPLRG-----SGLLGAA  67

Query  132  SRFGTLLPLATVAVSGLINQVILRPLTVRTMKERKH  167
             R   LL LA + +  L+N   L P     M++RK 
Sbjct  68   ERA-QLLLLAVMLLLTLLNLFYLGPRITALMEQRKE  102



Lambda      K        H        a         alpha
   0.321    0.135    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00017139

Length=442


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 539863808


Query= TCONS_00010458

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426069 pfam01131, Topoisom_bac, DNA topoisomerase. This subfa...  154     5e-46


>CDD:426069 pfam01131, Topoisom_bac, DNA topoisomerase.  This subfamily of 
topoisomerase is divided on the basis that these enzymes preferentially 
relax negatively supercoiled DNA, from a 5' phospho- 
tyrosine linkage in the enzyme-DNA covalent intermediate 
and has high affinity for single stranded DNA.
Length=410

 Score = 154 bits (391),  Expect = 5e-46, Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 77/157 (49%), Gaps = 15/157 (10%)

Query  2    FHANGLIVLEKNYLEVYIYDKWESSQQLPNFRVGEVFVPTEANMFEGKTTAPNYLTEPEL  61
            F A+G ++LE  +L+VY Y+K E  ++LP  + GE    T+  + E KT  P   TE  L
Sbjct  269  FRASGKVILEDGWLKVYPYEKKEDEEELPELKEGEELKVTQVEVEEKKTKPPPRYTEASL  328

Query  62   IGLMDANGIGTDATMAEHIAKIKEREYVAVHSRGSGRNAVKEFIPTRLGIALVEGYDNVV  121
            I  M+  GIGT AT A  I  + ER YV            K  +PT LG ALVE      
Sbjct  329  IKAMEKAGIGTPATRATIIETLLERGYVERKK--------KSLVPTELGKALVEA-----  375

Query  122  ANLPDKPSLSKPFLRKEMELRMREICAGSKSRQEVVQ  158
              L   P L  P L  E+E ++ EI  G    ++V+ 
Sbjct  376  --LEKFPDLVDPELTAELEEKLDEIAEGKLDWKDVLA  410



Lambda      K        H        a         alpha
   0.319    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00010459

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463949 pfam13664, DUF4149, Domain of unknown function (DUF4149)   97.7    3e-28


>CDD:463949 pfam13664, DUF4149, Domain of unknown function (DUF4149).  
Length=102

 Score = 97.7 bits (244),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 44/108 (41%), Positives = 55/108 (51%), Gaps = 6/108 (6%)

Query  10   LSYGTLLGVQVSQTFIGGVIAFRVLPRPQFSALQTSIFPVYFTLQSALPVVIALTSSKGG  69
            L     LG QV   F+   + FR LPR QF ALQ+ +FPVYF L  AL V++ LT    G
Sbjct  1    LLLALWLGGQVFVGFVVAPVLFRALPRHQFGALQSKLFPVYFWLGLALAVLLLLTEPLRG  60

Query  70   QLNGISGLLAPESRFGTLLPLATVAVSGLINQVILRPLTVRTMKERKH  117
                 SGLL    R   LL LA + +  L+N   L P     M++RK 
Sbjct  61   -----SGLLGAAERA-QLLLLAVMLLLTLLNLFYLGPRITALMEQRKE  102



Lambda      K        H        a         alpha
   0.324    0.141    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00017140

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426069 pfam01131, Topoisom_bac, DNA topoisomerase. This subfa...  154     5e-46


>CDD:426069 pfam01131, Topoisom_bac, DNA topoisomerase.  This subfamily of 
topoisomerase is divided on the basis that these enzymes preferentially 
relax negatively supercoiled DNA, from a 5' phospho- 
tyrosine linkage in the enzyme-DNA covalent intermediate 
and has high affinity for single stranded DNA.
Length=410

 Score = 154 bits (391),  Expect = 5e-46, Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 77/157 (49%), Gaps = 15/157 (10%)

Query  2    FHANGLIVLEKNYLEVYIYDKWESSQQLPNFRVGEVFVPTEANMFEGKTTAPNYLTEPEL  61
            F A+G ++LE  +L+VY Y+K E  ++LP  + GE    T+  + E KT  P   TE  L
Sbjct  269  FRASGKVILEDGWLKVYPYEKKEDEEELPELKEGEELKVTQVEVEEKKTKPPPRYTEASL  328

Query  62   IGLMDANGIGTDATMAEHIAKIKEREYVAVHSRGSGRNAVKEFIPTRLGIALVEGYDNVV  121
            I  M+  GIGT AT A  I  + ER YV            K  +PT LG ALVE      
Sbjct  329  IKAMEKAGIGTPATRATIIETLLERGYVERKK--------KSLVPTELGKALVEA-----  375

Query  122  ANLPDKPSLSKPFLRKEMELRMREICAGSKSRQEVVQ  158
              L   P L  P L  E+E ++ EI  G    ++V+ 
Sbjct  376  --LEKFPDLVDPELTAELEEKLDEIAEGKLDWKDVLA  410



Lambda      K        H        a         alpha
   0.319    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00010462

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426069 pfam01131, Topoisom_bac, DNA topoisomerase. This subfa...  154     5e-46


>CDD:426069 pfam01131, Topoisom_bac, DNA topoisomerase.  This subfamily of 
topoisomerase is divided on the basis that these enzymes preferentially 
relax negatively supercoiled DNA, from a 5' phospho- 
tyrosine linkage in the enzyme-DNA covalent intermediate 
and has high affinity for single stranded DNA.
Length=410

 Score = 154 bits (391),  Expect = 5e-46, Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 77/157 (49%), Gaps = 15/157 (10%)

Query  2    FHANGLIVLEKNYLEVYIYDKWESSQQLPNFRVGEVFVPTEANMFEGKTTAPNYLTEPEL  61
            F A+G ++LE  +L+VY Y+K E  ++LP  + GE    T+  + E KT  P   TE  L
Sbjct  269  FRASGKVILEDGWLKVYPYEKKEDEEELPELKEGEELKVTQVEVEEKKTKPPPRYTEASL  328

Query  62   IGLMDANGIGTDATMAEHIAKIKEREYVAVHSRGSGRNAVKEFIPTRLGIALVEGYDNVV  121
            I  M+  GIGT AT A  I  + ER YV            K  +PT LG ALVE      
Sbjct  329  IKAMEKAGIGTPATRATIIETLLERGYVERKK--------KSLVPTELGKALVEA-----  375

Query  122  ANLPDKPSLSKPFLRKEMELRMREICAGSKSRQEVVQ  158
              L   P L  P L  E+E ++ EI  G    ++V+ 
Sbjct  376  --LEKFPDLVDPELTAELEEKLDEIAEGKLDWKDVLA  410



Lambda      K        H        a         alpha
   0.319    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00010463

Length=1091


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1387860572


Query= TCONS_00010461

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426069 pfam01131, Topoisom_bac, DNA topoisomerase. This subfa...  154     5e-46


>CDD:426069 pfam01131, Topoisom_bac, DNA topoisomerase.  This subfamily of 
topoisomerase is divided on the basis that these enzymes preferentially 
relax negatively supercoiled DNA, from a 5' phospho- 
tyrosine linkage in the enzyme-DNA covalent intermediate 
and has high affinity for single stranded DNA.
Length=410

 Score = 154 bits (391),  Expect = 5e-46, Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 77/157 (49%), Gaps = 15/157 (10%)

Query  2    FHANGLIVLEKNYLEVYIYDKWESSQQLPNFRVGEVFVPTEANMFEGKTTAPNYLTEPEL  61
            F A+G ++LE  +L+VY Y+K E  ++LP  + GE    T+  + E KT  P   TE  L
Sbjct  269  FRASGKVILEDGWLKVYPYEKKEDEEELPELKEGEELKVTQVEVEEKKTKPPPRYTEASL  328

Query  62   IGLMDANGIGTDATMAEHIAKIKEREYVAVHSRGSGRNAVKEFIPTRLGIALVEGYDNVV  121
            I  M+  GIGT AT A  I  + ER YV            K  +PT LG ALVE      
Sbjct  329  IKAMEKAGIGTPATRATIIETLLERGYVERKK--------KSLVPTELGKALVEA-----  375

Query  122  ANLPDKPSLSKPFLRKEMELRMREICAGSKSRQEVVQ  158
              L   P L  P L  E+E ++ EI  G    ++V+ 
Sbjct  376  --LEKFPDLVDPELTAELEEKLDEIAEGKLDWKDVLA  410



Lambda      K        H        a         alpha
   0.319    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00010464

Length=648
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  178     5e-54


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 178 bits (455),  Expect = 5e-54, Method: Composition-based stats.
 Identities = 74/135 (55%), Positives = 92/135 (68%), Gaps = 7/135 (5%)

Query  441  ILSGPPGTGKTLLAKATAGESGVPFFSVSGSEFVEMFVGVGPSRVRDLFANARKNAPCII  500
            +L GPPGTGKT LAKA A E G PF  +SGSE V  +VG    R+R+LF  A+K APC+I
Sbjct  2    LLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVI  61

Query  501  FIDEIDAIGKSRAKQGFSGGNDERESTLNQILTEMDGF-NTTEQVVVLAGTNRPDVLDKA  559
            FIDEIDA+  SR     SGG+ E    +NQ+LTE+DGF ++  +V+V+A TNRPD LD A
Sbjct  62   FIDEIDALAGSR----GSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPA  117

Query  560  LMRPGRFDRHITIDR  574
            L+  GRFDR I    
Sbjct  118  LL--GRFDRIIEFPL  130



Lambda      K        H        a         alpha
   0.317    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 818508450


Query= TCONS_00010465

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399743 pfam06966, DUF1295, Protein of unknown function (DUF12...  108     4e-28


>CDD:399743 pfam06966, DUF1295, Protein of unknown function (DUF1295).  This 
family contains a number of bacterial and eukaryotic proteins 
of unknown function that are approximately 300 residues 
long.
Length=235

 Score = 108 bits (271),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 112/267 (42%), Gaps = 38/267 (14%)

Query  70   LFAVAAEFNRNYSQVDRFWSILPSVYTVHFVAWARLWGIKNQSLDTIALITLLWGIRLTF  129
             +A++     NYS VD  W     +  V  +  +    ++      + ++  LWG RL +
Sbjct  1    FWAISRRT-GNYSLVDVAWGGGFVLLAVLTLLLSEGATLRRM---LVTVLVTLWGARLAW  56

Query  130  NYWRKGGYQIGSEDYRWEIVKSHINNRFFLFLFNVTFISLIQPLLLLLVTAPTYNFILLS  189
            +  R+  +  G EDYR+  ++ +     +L    + FI  +Q +LL +V+ P Y    L+
Sbjct  57   HLLRRN-WGWG-EDYRYVDLRKNWGKTPYLLRLLIFFI--LQAVLLYIVSLPVY----LA  108

Query  190  RLPGAEP-FGLPDLAFSRLAFFFLIIEYFADQQQWNFQSAKKEYQKTARIPDQYKGQFTP  248
               G  P FG  D+    +     + E  ADQQ W F++                    P
Sbjct  109  NASGNNPAFGAWDIIGIAVWLVGFLFEALADQQLWAFKA-------------------DP  149

Query  249  EDLERGFVVSGLWSLSRHPNFVAEQAIWLTLYL--WNCYRTGSYIQWTGLGILGYMLIFQ  306
             +  + F  +GLW  SRHPN+  E  IW  ++L   N      +    G  ++  +L+F 
Sbjct  150  ANRGK-FCDTGLWRYSRHPNYFGEALIWWGIFLIALNVLSGLEWWTIFGPLVMTLLLVFV  208

Query  307  SSTRLTESISAGKY---PEYSEYQARV  330
            S   LTE  +  KY    +Y  YQ   
Sbjct  209  SGIPLTERSADKKYGDREDYRAYQRTT  235



Lambda      K        H        a         alpha
   0.324    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00017141

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460131 pfam01246, Ribosomal_L24e, Ribosomal protein L24e          109     1e-32


>CDD:460131 pfam01246, Ribosomal_L24e, Ribosomal protein L24e.  
Length=63

 Score = 109 bits (276),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 40/63 (63%), Gaps = 0/63 (0%)

Query  2   RVETCHFCSRPVYPSKGITFVRNDAKSFRFCRSKCHANFKMKRQPRKLKWTKTHRAARGK  61
           + ETC F    +YP  G  FVRND K FRFC SKC   FK KR PRKLKWTK +R A  K
Sbjct  1   KTETCSFSGYKIYPGHGKRFVRNDGKVFRFCSSKCEKLFKQKRNPRKLKWTKAYRRAHKK  60

Query  62  EMI  64
           E+ 
Sbjct  61  ELT  63



Lambda      K        H        a         alpha
   0.320    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00010466

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460131 pfam01246, Ribosomal_L24e, Ribosomal protein L24e          109     1e-32


>CDD:460131 pfam01246, Ribosomal_L24e, Ribosomal protein L24e.  
Length=63

 Score = 109 bits (276),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 40/63 (63%), Gaps = 0/63 (0%)

Query  2   RVETCHFCSRPVYPSKGITFVRNDAKSFRFCRSKCHANFKMKRQPRKLKWTKTHRAARGK  61
           + ETC F    +YP  G  FVRND K FRFC SKC   FK KR PRKLKWTK +R A  K
Sbjct  1   KTETCSFSGYKIYPGHGKRFVRNDGKVFRFCSSKCEKLFKQKRNPRKLKWTKAYRRAHKK  60

Query  62  EMI  64
           E+ 
Sbjct  61  ELT  63



Lambda      K        H        a         alpha
   0.320    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00017142

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460131 pfam01246, Ribosomal_L24e, Ribosomal protein L24e          109     1e-32


>CDD:460131 pfam01246, Ribosomal_L24e, Ribosomal protein L24e.  
Length=63

 Score = 109 bits (276),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 40/63 (63%), Gaps = 0/63 (0%)

Query  2   RVETCHFCSRPVYPSKGITFVRNDAKSFRFCRSKCHANFKMKRQPRKLKWTKTHRAARGK  61
           + ETC F    +YP  G  FVRND K FRFC SKC   FK KR PRKLKWTK +R A  K
Sbjct  1   KTETCSFSGYKIYPGHGKRFVRNDGKVFRFCSSKCEKLFKQKRNPRKLKWTKAYRRAHKK  60

Query  62  EMI  64
           E+ 
Sbjct  61  ELT  63



Lambda      K        H        a         alpha
   0.320    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00017143

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00010467

Length=248


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00017144

Length=248


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00017146

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00017145

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00010468

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.346    0.151    0.566    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00010469

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00010470

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00010471

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00010472

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00017148

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459630 pfam00013, KH_1, KH domain. KH motifs bind RNA in vitr...  68.5    3e-16


>CDD:459630 pfam00013, KH_1, KH domain.  KH motifs bind RNA in vitro. Autoantibodies 
to Nova, a KH domain protein, cause paraneoplastic 
opsoclonus ataxia.
Length=65

 Score = 68.5 bits (168),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (2%)

Query  141  TQNISIPADMVGCIIGRGGSKITEIRRSSGARISIAKAPHDETGERMFTIMGSAQANEKA  200
            T  I +P+ +VG IIG+GGS I EIR  +GA+I I  +   E  ER+ TI G+ +A E A
Sbjct  1    TVEILVPSSLVGLIIGKGGSNIKEIREETGAKIQIPPSE-SEGNERIVTITGTPEAVEAA  59

Query  201  LYLLYE  206
              L+ E
Sbjct  60   KALIEE  65



Lambda      K        H        a         alpha
   0.312    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00017150

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00017151

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00017152

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00017149

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00017153

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459630 pfam00013, KH_1, KH domain. KH motifs bind RNA in vitr...  68.5    3e-16


>CDD:459630 pfam00013, KH_1, KH domain.  KH motifs bind RNA in vitro. Autoantibodies 
to Nova, a KH domain protein, cause paraneoplastic 
opsoclonus ataxia.
Length=65

 Score = 68.5 bits (168),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (2%)

Query  141  TQNISIPADMVGCIIGRGGSKITEIRRSSGARISIAKAPHDETGERMFTIMGSAQANEKA  200
            T  I +P+ +VG IIG+GGS I EIR  +GA+I I  +   E  ER+ TI G+ +A E A
Sbjct  1    TVEILVPSSLVGLIIGKGGSNIKEIREETGAKIQIPPSE-SEGNERIVTITGTPEAVEAA  59

Query  201  LYLLYE  206
              L+ E
Sbjct  60   KALIEE  65



Lambda      K        H        a         alpha
   0.312    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00010478

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00010477

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00010476

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00017156

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00017155

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00017154

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00017157

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00017159

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00017158

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00017160

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00010480

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00010482

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459630 pfam00013, KH_1, KH domain. KH motifs bind RNA in vitr...  68.5    3e-16


>CDD:459630 pfam00013, KH_1, KH domain.  KH motifs bind RNA in vitro. Autoantibodies 
to Nova, a KH domain protein, cause paraneoplastic 
opsoclonus ataxia.
Length=65

 Score = 68.5 bits (168),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (2%)

Query  141  TQNISIPADMVGCIIGRGGSKITEIRRSSGARISIAKAPHDETGERMFTIMGSAQANEKA  200
            T  I +P+ +VG IIG+GGS I EIR  +GA+I I  +   E  ER+ TI G+ +A E A
Sbjct  1    TVEILVPSSLVGLIIGKGGSNIKEIREETGAKIQIPPSE-SEGNERIVTITGTPEAVEAA  59

Query  201  LYLLYE  206
              L+ E
Sbjct  60   KALIEE  65



Lambda      K        H        a         alpha
   0.312    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00010483

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459630 pfam00013, KH_1, KH domain. KH motifs bind RNA in vitr...  68.5    3e-16


>CDD:459630 pfam00013, KH_1, KH domain.  KH motifs bind RNA in vitro. Autoantibodies 
to Nova, a KH domain protein, cause paraneoplastic 
opsoclonus ataxia.
Length=65

 Score = 68.5 bits (168),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (2%)

Query  141  TQNISIPADMVGCIIGRGGSKITEIRRSSGARISIAKAPHDETGERMFTIMGSAQANEKA  200
            T  I +P+ +VG IIG+GGS I EIR  +GA+I I  +   E  ER+ TI G+ +A E A
Sbjct  1    TVEILVPSSLVGLIIGKGGSNIKEIREETGAKIQIPPSE-SEGNERIVTITGTPEAVEAA  59

Query  201  LYLLYE  206
              L+ E
Sbjct  60   KALIEE  65



Lambda      K        H        a         alpha
   0.312    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00017161

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  70.4    7e-16


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 70.4 bits (173),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 38/161 (24%), Positives = 64/161 (40%), Gaps = 43/161 (27%)

Query  39   DISQDVDRCLQENYFFREPATKAKMIDILFIYAKLNPDLGYRQGMHELLAPILWVIHGDA  98
             I +DV R    ++FF     +  +  IL  Y+  NPD+GY QGM+ + AP+L V + D 
Sbjct  11   QIEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLV-YLD-  68

Query  99   VDGKVLEESSVKEEGDDLMLHLLNFDYVEHDSFALFCSVM--QTTRVYYEHNKERSANGQ  156
                                        E D+F  F S++     R +Y  +        
Sbjct  69   ----------------------------EEDAFWCFVSLLENYLLRDFYTPD--------  92

Query  157  MDEIPIVNQCQHIHQNLLTTTDLELADHLQALEILPQIFLT  197
                P + +  ++ + LL     +L  HL+ L + P +F +
Sbjct  93   ---FPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFAS  130



Lambda      K        H        a         alpha
   0.324    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00017162

Length=428


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00010489

Length=736
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  128     6e-35


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 128 bits (325),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 49/220 (22%)

Query  143  EQMRAD-----ISQDVDRCLQENYFFREPATKAKMIDILFIYAKLNPDLGYRQGMHELLA  197
            +++R       I +DV R    ++FF     +  +  IL  Y+  NPD+GY QGM+ + A
Sbjct  1    DELRGQVWPEQIEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAA  60

Query  198  PILWVIHGDAVDGKVLEESSVKEEGDDLMLHLLNFDYVEHDSFALFCSVM--QTTRVYYE  255
            P+L V + D                             E D+F  F S++     R +Y 
Sbjct  61   PLLLV-YLD-----------------------------EEDAFWCFVSLLENYLLRDFYT  90

Query  256  HNKERSANGQMDEIPIVNQCQHIHQNLLTTTDLELADHLQALEILPQIFLTRWMRLLFGR  315
             +            P + +  ++ + LL     +L  HL+ L + P +F ++W   LF R
Sbjct  91   PD-----------FPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAR  139

Query  316  EFPFQDVLSLWDILFAEGLRSELIEFTCVAMLLRIRWQLL  355
            EFP   VL +WD  F EG +  L     +A+L R R +LL
Sbjct  140  EFPLSTVLRIWDYFFLEGEKFVLF-RVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.316    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 934207584


Query= TCONS_00010485

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00010490

Length=605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  130     1e-35


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 130 bits (329),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 44/210 (21%)

Query  4    DISQDVDRCLQENYFFREPATKAKMIDILFIYAKLNPDLGYRQGMHELLAPILWVIHGDA  63
             I +DV R    ++FF     +  +  IL  Y+  NPD+GY QGM+ + AP+L V + D 
Sbjct  11   QIEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLV-YLD-  68

Query  64   VDGKVLEESSVKEEGDDLMLHLLNFDYVEHDSFALFCSVM--QTTRVYYEHNKERSANGQ  121
                                        E D+F  F S++     R +Y  +        
Sbjct  69   ----------------------------EEDAFWCFVSLLENYLLRDFYTPD--------  92

Query  122  MDEIPIVNQCQHIHQNLLTTTDLELADHLQALEILPQIFLTRWMRLLFGREFPFQDVLSL  181
                P + +  ++ + LL     +L  HL+ L + P +F ++W   LF REFP   VL +
Sbjct  93   ---FPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRI  149

Query  182  WDILFAEGLRSELIEFTCVAMLLRIRWQLL  211
            WD  F EG +  L     +A+L R R +LL
Sbjct  150  WDYFFLEGEKFVLF-RVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.315    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 766641564


Query= TCONS_00010486

Length=640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  129     2e-35


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 129 bits (327),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 49/220 (22%)

Query  34   EQMRAD-----ISQDVDRCLQENYFFREPATKAKMIDILFIYAKLNPDLGYRQGMHELLA  88
            +++R       I +DV R    ++FF     +  +  IL  Y+  NPD+GY QGM+ + A
Sbjct  1    DELRGQVWPEQIEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAA  60

Query  89   PILWVIHGDAVDGKVLEESSVKEEGDDLMLHLLNFDYVEHDSFALFCSVM--QTTRVYYE  146
            P+L V + D                             E D+F  F S++     R +Y 
Sbjct  61   PLLLV-YLD-----------------------------EEDAFWCFVSLLENYLLRDFYT  90

Query  147  HNKERSANGQMDEIPIVNQCQHIHQNLLTTTDLELADHLQALEILPQIFLTRWMRLLFGR  206
             +            P + +  ++ + LL     +L  HL+ L + P +F ++W   LF R
Sbjct  91   PD-----------FPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAR  139

Query  207  EFPFQDVLSLWDILFAEGLRSELIEFTCVAMLLRIRWQLL  246
            EFP   VL +WD  F EG +  L     +A+L R R +LL
Sbjct  140  EFPLSTVLRIWDYFFLEGEKFVLF-RVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.316    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 806710130


Query= TCONS_00010487

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  62.7    7e-13


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 62.7 bits (153),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (55%), Gaps = 1/62 (2%)

Query  148  DISQDVDRCLQENYFFREPATKAKMIDILFIYAKLNPDLGYRQGMHELLAPILWVIHGDA  207
             I +DV R    ++FF     +  +  IL  Y+  NPD+GY QGM+ + AP+L V + D 
Sbjct  11   QIEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLV-YLDE  69

Query  208  VD  209
             D
Sbjct  70   ED  71



Lambda      K        H        a         alpha
   0.320    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00010488

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  70.4    7e-16


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 70.4 bits (173),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 38/161 (24%), Positives = 64/161 (40%), Gaps = 43/161 (27%)

Query  39   DISQDVDRCLQENYFFREPATKAKMIDILFIYAKLNPDLGYRQGMHELLAPILWVIHGDA  98
             I +DV R    ++FF     +  +  IL  Y+  NPD+GY QGM+ + AP+L V + D 
Sbjct  11   QIEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLV-YLD-  68

Query  99   VDGKVLEESSVKEEGDDLMLHLLNFDYVEHDSFALFCSVM--QTTRVYYEHNKERSANGQ  156
                                        E D+F  F S++     R +Y  +        
Sbjct  69   ----------------------------EEDAFWCFVSLLENYLLRDFYTPD--------  92

Query  157  MDEIPIVNQCQHIHQNLLTTTDLELADHLQALEILPQIFLT  197
                P + +  ++ + LL     +L  HL+ L + P +F +
Sbjct  93   ---FPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFAS  130



Lambda      K        H        a         alpha
   0.324    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00010491

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  72.7    3e-16


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 72.7 bits (179),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 38/161 (24%), Positives = 64/161 (40%), Gaps = 43/161 (27%)

Query  115  DISQDVDRCLQENYFFREPATKAKMIDILFIYAKLNPDLGYRQGMHELLAPILWVIHGDA  174
             I +DV R    ++FF     +  +  IL  Y+  NPD+GY QGM+ + AP+L V + D 
Sbjct  11   QIEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLV-YLD-  68

Query  175  VDGKVLEESSVKEEGDDLMLHLLNFDYVEHDSFALFCSVM--QTTRVYYEHNKERSANGQ  232
                                        E D+F  F S++     R +Y  +        
Sbjct  69   ----------------------------EEDAFWCFVSLLENYLLRDFYTPD--------  92

Query  233  MDEIPIVNQCQHIHQNLLTTTDLELADHLQALEILPQIFLT  273
                P + +  ++ + LL     +L  HL+ L + P +F +
Sbjct  93   ---FPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFAS  130



Lambda      K        H        a         alpha
   0.320    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00017163

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  88.1    7e-21


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 88.1 bits (219),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 60/129 (47%), Gaps = 14/129 (11%)

Query  4    LLNFDYVEHDSFALFCSVM--QTTRVYYEHNKERSANGQMDEIPIVNQCQHIHQNLLTTT  61
            LL     E D+F  F S++     R +Y  +            P + +  ++ + LL   
Sbjct  62   LLLVYLDEEDAFWCFVSLLENYLLRDFYTPD-----------FPGLKRDLYVFEELLKKK  110

Query  62   DLELADHLQALEILPQIFLTRWMRLLFGREFPFQDVLSLWDILFAEGLRSELIEFTCVAM  121
              +L  HL+ L + P +F ++W   LF REFP   VL +WD  F EG +  L     +A+
Sbjct  111  LPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRIWDYFFLEGEKFVLF-RVALAI  169

Query  122  LLRIRWQLL  130
            L R R +LL
Sbjct  170  LKRFREELL  178



Lambda      K        H        a         alpha
   0.314    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 654076512


Query= TCONS_00017164

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  72.7    3e-16


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 72.7 bits (179),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 38/161 (24%), Positives = 64/161 (40%), Gaps = 43/161 (27%)

Query  115  DISQDVDRCLQENYFFREPATKAKMIDILFIYAKLNPDLGYRQGMHELLAPILWVIHGDA  174
             I +DV R    ++FF     +  +  IL  Y+  NPD+GY QGM+ + AP+L V + D 
Sbjct  11   QIEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLV-YLD-  68

Query  175  VDGKVLEESSVKEEGDDLMLHLLNFDYVEHDSFALFCSVM--QTTRVYYEHNKERSANGQ  232
                                        E D+F  F S++     R +Y  +        
Sbjct  69   ----------------------------EEDAFWCFVSLLENYLLRDFYTPD--------  92

Query  233  MDEIPIVNQCQHIHQNLLTTTDLELADHLQALEILPQIFLT  273
                P + +  ++ + LL     +L  HL+ L + P +F +
Sbjct  93   ---FPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFAS  130



Lambda      K        H        a         alpha
   0.320    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00017165

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  129     2e-35


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 129 bits (326),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 44/210 (21%)

Query  4    DISQDVDRCLQENYFFREPATKAKMIDILFIYAKLNPDLGYRQGMHELLAPILWVIHGDA  63
             I +DV R    ++FF     +  +  IL  Y+  NPD+GY QGM+ + AP+L V + D 
Sbjct  11   QIEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLV-YLD-  68

Query  64   VDGKVLEESSVKEEGDDLMLHLLNFDYVEHDSFALFCSVM--QTTRVYYEHNKERSANGQ  121
                                        E D+F  F S++     R +Y  +        
Sbjct  69   ----------------------------EEDAFWCFVSLLENYLLRDFYTPD--------  92

Query  122  MDEIPIVNQCQHIHQNLLTTTDLELADHLQALEILPQIFLTRWMRLLFGREFPFQDVLSL  181
                P + +  ++ + LL     +L  HL+ L + P +F ++W   LF REFP   VL +
Sbjct  93   ---FPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRI  149

Query  182  WDILFAEGLRSELIEFTCVAMLLRIRWQLL  211
            WD  F EG +  L     +A+L R R +LL
Sbjct  150  WDYFFLEGEKFVLF-RVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.317    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690414096


Query= TCONS_00017166

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  112     3e-31


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 112 bits (282),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 89/208 (43%), Gaps = 44/208 (21%)

Query  4    DISQDVDRCLQENYFFREPATKAKMIDILFIYAKLNPDLGYRQGMHELLAPILWVIHGDA  63
             I +DV R    ++FF     +  +  IL  Y+  NPD+GY QGM+ + AP+L V + D 
Sbjct  11   QIEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLV-YLD-  68

Query  64   VDGKVLEESSVKEEGDDLMLHLLNFDYVEHDSFALFCSVM--QTTRVYYEHNKERSANGQ  121
                                        E D+F  F S++     R +Y  +        
Sbjct  69   ----------------------------EEDAFWCFVSLLENYLLRDFYTPD--------  92

Query  122  MDEIPIVNQCQHIHQNLLTTTDLELADHLQALEILPQIFLTRWMRLLFGREFPFQDVLSL  181
                P + +  ++ + LL     +L  HL+ L + P +F ++W   LF REFP   VL +
Sbjct  93   ---FPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRI  149

Query  182  WDILFAEGLRSELIEFTCVAMLLRIRWQ  209
            WD  F EG +  L     +A+L R R +
Sbjct  150  WDYFFLEGEKFVLF-RVALAILKRFREE  176



Lambda      K        H        a         alpha
   0.326    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00017167

Length=560
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  125     6e-34


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 125 bits (315),  Expect = 6e-34, Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 90/210 (43%), Gaps = 44/210 (21%)

Query  4    DISQDVDRCLQENYFFREPATKAKMIDILFIYAKLNPDLGYRQGMHELLAPILWVIHGDA  63
             I +DV R    ++FF     +  +  IL  Y+  NPD+GY QGM+ + AP+L V + D 
Sbjct  11   QIEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLV-YLD-  68

Query  64   VDGKVLEESSVKEEGDDLMLHLLNFDYVEHDSFALFCSVM--QTTRVYYEHNKERSANGQ  121
                                        E D+F  F S++     R +Y  +        
Sbjct  69   ----------------------------EEDAFWCFVSLLENYLLRDFYTPD--------  92

Query  122  MDEIPIVNQCQHIHQNLLTTTDLELADHLQALEILPQIFLTWWMRLLFGREFPFQDVLSL  181
                P + +  ++ + LL     +L  HL+ L + P +F + W   LF REFP   VL +
Sbjct  93   ---FPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRI  149

Query  182  WDILFAEGLRSELIEFTCVAMLLRIRWQLL  211
            WD  F EG +  L     +A+L R R +LL
Sbjct  150  WDYFFLEGEKFVLF-RVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.316    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 699392304


Query= TCONS_00017168

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  123     2e-33


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 123 bits (310),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 44/210 (21%)

Query  115  DISQDVDRCLQENYFFREPATKAKMIDILFIYAKLNPDLGYRQGMHELLAPILWVIHGDA  174
             I +DV R    ++FF     +  +  IL  Y+  NPD+GY QGM+ + AP+L V + D 
Sbjct  11   QIEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLV-YLD-  68

Query  175  VDGKVLEESSVKEEGDDLMLHLLNFDYVEHDSFALFCSVM--QTTRVYYEHNKERSANGQ  232
                                        E D+F  F S++     R +Y  +        
Sbjct  69   ----------------------------EEDAFWCFVSLLENYLLRDFYTPD--------  92

Query  233  MDEIPIVNQCQHIHQNLLTTTDLELADHLQALEILPQIFLTRWMRLLFGREFPFQDVLSL  292
                P + +  ++ + LL     +L  HL+ L + P +F ++W   LF REFP   VL +
Sbjct  93   ---FPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRI  149

Query  293  WDILFAEGLRSELIEFTCVAMLLRIRWQLL  322
            WD  F EG +  L     +A+L R R +LL
Sbjct  150  WDYFFLEGEKFVLF-RVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.320    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 619252994


Query= TCONS_00017169

Length=261


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.122    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00010497

Length=920
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  102     4e-25


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 102 bits (256),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 37/129 (29%), Positives = 61/129 (47%), Gaps = 18/129 (14%)

Query  733  YVILEEMGQGAYGEVKLARLKKNPSKKVVLKYVTKKRILVDTWTRDRRLGTVPLEIHVLD  792
            Y +L ++G G++G V  A+ +    K V +K + K++I         R      EI +L 
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDT-GKIVAIKKIKKEKIKKKKDKNILR------EIKIL-  52

Query  793  YLRRDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYIELKVNMDEVECRNIF  850
              ++  L HPNIV +   FED  N Y+  E +  G     LFD +  K    E E + I 
Sbjct  53   --KK--LNHPNIVRLYDAFEDKDNLYLVLEYVEGG----SLFDLLSEKGAFSEREAKFIM  104

Query  851  RQVVDAIHH  859
            +Q+++ +  
Sbjct  105  KQILEGLES  113



Lambda      K        H        a         alpha
   0.316    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00010493

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  201     2e-59
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            89.1    6e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 201 bits (513),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 80/271 (30%), Positives = 120/271 (44%), Gaps = 64/271 (24%)

Query  830   YVILEEMGQGAYGEVKLARLKKNPSKKVVLKYVTKKRILVDTWTRDRRLGTVPLEIHVLD  889
             Y +L ++G G++G V  A+ +    K V +K + K++I         R      EI +L 
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDT-GKIVAIKKIKKEKIKKKKDKNILR------EIKIL-  52

Query  890   YLRRDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYIELKVNMDEVECRNIF  947
               ++  L HPNIV +   FED  N Y+  E +  G     LFD +  K    E E + I 
Sbjct  53    --KK--LNHPNIVRLYDAFEDKDNLYLVLEYVEGG----SLFDLLSEKGAFSEREAKFIM  104

Query  948   RQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDVFVGTIDYA  1007
             +Q+++ +                                             FVGT  Y 
Sbjct  105   KQILEGLES-------------------------------------GSSLTTFVGTPWYM  127

Query  1008  APEVLQGKSYRGKEQDIWALGILLYTIVYKENPFYNIDE------ILDHPLRIPFLP--F  1059
             APEVL G  Y G + D+W+LG +LY ++  + PF  I+       I+D P   P LP   
Sbjct  128   APEVLGGNPY-GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNL  186

Query  1060  SEDCIDLIKKMLDRDVDNRLTITEVMEHPWM  1090
             SE+  DL+KK+L +D   RLT T+ ++HPW 
Sbjct  187   SEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 89.1 bits (222),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 124/285 (44%), Gaps = 57/285 (20%)

Query  831   VILEEMGQGAYGEVKLARLKKNPSK---KVVLKYVTKKRILVDTWTRDRRLGTVPLEIHV  887
              + E++G+GA+GEV    LK        KV +K       L +             E   
Sbjct  2     TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVK------TLKEGAD----------EEER  45

Query  888   LDYLR-----RDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYI-ELKVNMD  939
              D+L      +  L HPNIV++ G        YI  E MP G    DL D++ + K  + 
Sbjct  46    EDFLEEASIMKK-LDHPNIVKLLGVCTQGEPLYIVTEYMPGG----DLLDFLRKHKRKLT  100

Query  940   EVECRNIFRQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDV  999
               +  ++  Q+   + +L +K  V HRD+   N ++     +KI DFG +  I +  +  
Sbjct  101   LKDLLSMALQIAKGMEYLESKNFV-HRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYR  159

Query  1000  FVGT-----IDYAAPEVLQGKSYRGKEQDIWALGILLYTIV-YKENPFYNID--EILD--  1049
                      I + APE L+   +  K  D+W+ G+LL+ I    E P+  +   E+L+  
Sbjct  160   -KRGGGKLPIKWMAPESLKDGKFTSK-SDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFL  217

Query  1050  ---HPLRIPFLPFSEDC----IDLIKKMLDRDVDNRLTITEVMEH  1087
                + L  P     E+C     DL+K+    D ++R T +E++E 
Sbjct  218   EDGYRLPQP-----ENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.315    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390653048


Query= TCONS_00010494

Length=1112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  201     2e-59
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            89.1    6e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 201 bits (513),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 80/271 (30%), Positives = 120/271 (44%), Gaps = 64/271 (24%)

Query  849   YVILEEMGQGAYGEVKLARLKKNPSKKVVLKYVTKKRILVDTWTRDRRLGTVPLEIHVLD  908
             Y +L ++G G++G V  A+ +    K V +K + K++I         R      EI +L 
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDT-GKIVAIKKIKKEKIKKKKDKNILR------EIKIL-  52

Query  909   YLRRDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYIELKVNMDEVECRNIF  966
               ++  L HPNIV +   FED  N Y+  E +  G     LFD +  K    E E + I 
Sbjct  53    --KK--LNHPNIVRLYDAFEDKDNLYLVLEYVEGG----SLFDLLSEKGAFSEREAKFIM  104

Query  967   RQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDVFVGTIDYA  1026
             +Q+++ +                                             FVGT  Y 
Sbjct  105   KQILEGLES-------------------------------------GSSLTTFVGTPWYM  127

Query  1027  APEVLQGKSYRGKEQDIWALGILLYTIVYKENPFYNIDE------ILDHPLRIPFLP--F  1078
             APEVL G  Y G + D+W+LG +LY ++  + PF  I+       I+D P   P LP   
Sbjct  128   APEVLGGNPY-GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNL  186

Query  1079  SEDCIDLIKKMLDRDVDNRLTITEVMEHPWM  1109
             SE+  DL+KK+L +D   RLT T+ ++HPW 
Sbjct  187   SEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 89.1 bits (222),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 124/285 (44%), Gaps = 57/285 (20%)

Query  850   VILEEMGQGAYGEVKLARLKKNPSK---KVVLKYVTKKRILVDTWTRDRRLGTVPLEIHV  906
              + E++G+GA+GEV    LK        KV +K       L +             E   
Sbjct  2     TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVK------TLKEGAD----------EEER  45

Query  907   LDYLR-----RDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYI-ELKVNMD  958
              D+L      +  L HPNIV++ G        YI  E MP G    DL D++ + K  + 
Sbjct  46    EDFLEEASIMKK-LDHPNIVKLLGVCTQGEPLYIVTEYMPGG----DLLDFLRKHKRKLT  100

Query  959   EVECRNIFRQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDV  1018
               +  ++  Q+   + +L +K  V HRD+   N ++     +KI DFG +  I +  +  
Sbjct  101   LKDLLSMALQIAKGMEYLESKNFV-HRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYR  159

Query  1019  FVGT-----IDYAAPEVLQGKSYRGKEQDIWALGILLYTIV-YKENPFYNID--EILD--  1068
                      I + APE L+   +  K  D+W+ G+LL+ I    E P+  +   E+L+  
Sbjct  160   -KRGGGKLPIKWMAPESLKDGKFTSK-SDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFL  217

Query  1069  ---HPLRIPFLPFSEDC----IDLIKKMLDRDVDNRLTITEVMEH  1106
                + L  P     E+C     DL+K+    D ++R T +E++E 
Sbjct  218   EDGYRLPQP-----ENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.315    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 1417181570


Query= TCONS_00010496

Length=1112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  201     2e-59
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            89.1    6e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 201 bits (513),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 80/271 (30%), Positives = 120/271 (44%), Gaps = 64/271 (24%)

Query  849   YVILEEMGQGAYGEVKLARLKKNPSKKVVLKYVTKKRILVDTWTRDRRLGTVPLEIHVLD  908
             Y +L ++G G++G V  A+ +    K V +K + K++I         R      EI +L 
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDT-GKIVAIKKIKKEKIKKKKDKNILR------EIKIL-  52

Query  909   YLRRDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYIELKVNMDEVECRNIF  966
               ++  L HPNIV +   FED  N Y+  E +  G     LFD +  K    E E + I 
Sbjct  53    --KK--LNHPNIVRLYDAFEDKDNLYLVLEYVEGG----SLFDLLSEKGAFSEREAKFIM  104

Query  967   RQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDVFVGTIDYA  1026
             +Q+++ +                                             FVGT  Y 
Sbjct  105   KQILEGLES-------------------------------------GSSLTTFVGTPWYM  127

Query  1027  APEVLQGKSYRGKEQDIWALGILLYTIVYKENPFYNIDE------ILDHPLRIPFLP--F  1078
             APEVL G  Y G + D+W+LG +LY ++  + PF  I+       I+D P   P LP   
Sbjct  128   APEVLGGNPY-GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNL  186

Query  1079  SEDCIDLIKKMLDRDVDNRLTITEVMEHPWM  1109
             SE+  DL+KK+L +D   RLT T+ ++HPW 
Sbjct  187   SEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 89.1 bits (222),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 124/285 (44%), Gaps = 57/285 (20%)

Query  850   VILEEMGQGAYGEVKLARLKKNPSK---KVVLKYVTKKRILVDTWTRDRRLGTVPLEIHV  906
              + E++G+GA+GEV    LK        KV +K       L +             E   
Sbjct  2     TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVK------TLKEGAD----------EEER  45

Query  907   LDYLR-----RDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYI-ELKVNMD  958
              D+L      +  L HPNIV++ G        YI  E MP G    DL D++ + K  + 
Sbjct  46    EDFLEEASIMKK-LDHPNIVKLLGVCTQGEPLYIVTEYMPGG----DLLDFLRKHKRKLT  100

Query  959   EVECRNIFRQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDV  1018
               +  ++  Q+   + +L +K  V HRD+   N ++     +KI DFG +  I +  +  
Sbjct  101   LKDLLSMALQIAKGMEYLESKNFV-HRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYR  159

Query  1019  FVGT-----IDYAAPEVLQGKSYRGKEQDIWALGILLYTIV-YKENPFYNID--EILD--  1068
                      I + APE L+   +  K  D+W+ G+LL+ I    E P+  +   E+L+  
Sbjct  160   -KRGGGKLPIKWMAPESLKDGKFTSK-SDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFL  217

Query  1069  ---HPLRIPFLPFSEDC----IDLIKKMLDRDVDNRLTITEVMEH  1106
                + L  P     E+C     DL+K+    D ++R T +E++E 
Sbjct  218   EDGYRLPQP-----ENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.315    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1417181570


Query= TCONS_00010495

Length=1112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  201     2e-59
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            89.1    6e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 201 bits (513),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 80/271 (30%), Positives = 120/271 (44%), Gaps = 64/271 (24%)

Query  849   YVILEEMGQGAYGEVKLARLKKNPSKKVVLKYVTKKRILVDTWTRDRRLGTVPLEIHVLD  908
             Y +L ++G G++G V  A+ +    K V +K + K++I         R      EI +L 
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDT-GKIVAIKKIKKEKIKKKKDKNILR------EIKIL-  52

Query  909   YLRRDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYIELKVNMDEVECRNIF  966
               ++  L HPNIV +   FED  N Y+  E +  G     LFD +  K    E E + I 
Sbjct  53    --KK--LNHPNIVRLYDAFEDKDNLYLVLEYVEGG----SLFDLLSEKGAFSEREAKFIM  104

Query  967   RQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDVFVGTIDYA  1026
             +Q+++ +                                             FVGT  Y 
Sbjct  105   KQILEGLES-------------------------------------GSSLTTFVGTPWYM  127

Query  1027  APEVLQGKSYRGKEQDIWALGILLYTIVYKENPFYNIDE------ILDHPLRIPFLP--F  1078
             APEVL G  Y G + D+W+LG +LY ++  + PF  I+       I+D P   P LP   
Sbjct  128   APEVLGGNPY-GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNL  186

Query  1079  SEDCIDLIKKMLDRDVDNRLTITEVMEHPWM  1109
             SE+  DL+KK+L +D   RLT T+ ++HPW 
Sbjct  187   SEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 89.1 bits (222),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 124/285 (44%), Gaps = 57/285 (20%)

Query  850   VILEEMGQGAYGEVKLARLKKNPSK---KVVLKYVTKKRILVDTWTRDRRLGTVPLEIHV  906
              + E++G+GA+GEV    LK        KV +K       L +             E   
Sbjct  2     TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVK------TLKEGAD----------EEER  45

Query  907   LDYLR-----RDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYI-ELKVNMD  958
              D+L      +  L HPNIV++ G        YI  E MP G    DL D++ + K  + 
Sbjct  46    EDFLEEASIMKK-LDHPNIVKLLGVCTQGEPLYIVTEYMPGG----DLLDFLRKHKRKLT  100

Query  959   EVECRNIFRQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDV  1018
               +  ++  Q+   + +L +K  V HRD+   N ++     +KI DFG +  I +  +  
Sbjct  101   LKDLLSMALQIAKGMEYLESKNFV-HRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYR  159

Query  1019  FVGT-----IDYAAPEVLQGKSYRGKEQDIWALGILLYTIV-YKENPFYNID--EILD--  1068
                      I + APE L+   +  K  D+W+ G+LL+ I    E P+  +   E+L+  
Sbjct  160   -KRGGGKLPIKWMAPESLKDGKFTSK-SDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFL  217

Query  1069  ---HPLRIPFLPFSEDC----IDLIKKMLDRDVDNRLTITEVMEH  1106
                + L  P     E+C     DL+K+    D ++R T +E++E 
Sbjct  218   EDGYRLPQP-----ENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.315    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1417181570


Query= TCONS_00010498

Length=1081
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  201     2e-59
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            89.1    6e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 201 bits (513),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 80/271 (30%), Positives = 120/271 (44%), Gaps = 64/271 (24%)

Query  818   YVILEEMGQGAYGEVKLARLKKNPSKKVVLKYVTKKRILVDTWTRDRRLGTVPLEIHVLD  877
             Y +L ++G G++G V  A+ +    K V +K + K++I         R      EI +L 
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDT-GKIVAIKKIKKEKIKKKKDKNILR------EIKIL-  52

Query  878   YLRRDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYIELKVNMDEVECRNIF  935
               ++  L HPNIV +   FED  N Y+  E +  G     LFD +  K    E E + I 
Sbjct  53    --KK--LNHPNIVRLYDAFEDKDNLYLVLEYVEGG----SLFDLLSEKGAFSEREAKFIM  104

Query  936   RQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDVFVGTIDYA  995
             +Q+++ +                                             FVGT  Y 
Sbjct  105   KQILEGLES-------------------------------------GSSLTTFVGTPWYM  127

Query  996   APEVLQGKSYRGKEQDIWALGILLYTIVYKENPFYNIDE------ILDHPLRIPFLP--F  1047
             APEVL G  Y G + D+W+LG +LY ++  + PF  I+       I+D P   P LP   
Sbjct  128   APEVLGGNPY-GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNL  186

Query  1048  SEDCIDLIKKMLDRDVDNRLTITEVMEHPWM  1078
             SE+  DL+KK+L +D   RLT T+ ++HPW 
Sbjct  187   SEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 89.1 bits (222),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 124/285 (44%), Gaps = 57/285 (20%)

Query  819   VILEEMGQGAYGEVKLARLKKNPSK---KVVLKYVTKKRILVDTWTRDRRLGTVPLEIHV  875
              + E++G+GA+GEV    LK        KV +K       L +             E   
Sbjct  2     TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVK------TLKEGAD----------EEER  45

Query  876   LDYLR-----RDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYI-ELKVNMD  927
              D+L      +  L HPNIV++ G        YI  E MP G    DL D++ + K  + 
Sbjct  46    EDFLEEASIMKK-LDHPNIVKLLGVCTQGEPLYIVTEYMPGG----DLLDFLRKHKRKLT  100

Query  928   EVECRNIFRQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDV  987
               +  ++  Q+   + +L +K  V HRD+   N ++     +KI DFG +  I +  +  
Sbjct  101   LKDLLSMALQIAKGMEYLESKNFV-HRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYR  159

Query  988   FVGT-----IDYAAPEVLQGKSYRGKEQDIWALGILLYTIV-YKENPFYNID--EILD--  1037
                      I + APE L+   +  K  D+W+ G+LL+ I    E P+  +   E+L+  
Sbjct  160   -KRGGGKLPIKWMAPESLKDGKFTSK-SDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFL  217

Query  1038  ---HPLRIPFLPFSEDC----IDLIKKMLDRDVDNRLTITEVMEH  1075
                + L  P     E+C     DL+K+    D ++R T +E++E 
Sbjct  218   EDGYRLPQP-----ENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1394637860


Query= TCONS_00010499

Length=1081
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  201     2e-59
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            89.1    6e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 201 bits (513),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 80/271 (30%), Positives = 120/271 (44%), Gaps = 64/271 (24%)

Query  818   YVILEEMGQGAYGEVKLARLKKNPSKKVVLKYVTKKRILVDTWTRDRRLGTVPLEIHVLD  877
             Y +L ++G G++G V  A+ +    K V +K + K++I         R      EI +L 
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDT-GKIVAIKKIKKEKIKKKKDKNILR------EIKIL-  52

Query  878   YLRRDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYIELKVNMDEVECRNIF  935
               ++  L HPNIV +   FED  N Y+  E +  G     LFD +  K    E E + I 
Sbjct  53    --KK--LNHPNIVRLYDAFEDKDNLYLVLEYVEGG----SLFDLLSEKGAFSEREAKFIM  104

Query  936   RQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDVFVGTIDYA  995
             +Q+++ +                                             FVGT  Y 
Sbjct  105   KQILEGLES-------------------------------------GSSLTTFVGTPWYM  127

Query  996   APEVLQGKSYRGKEQDIWALGILLYTIVYKENPFYNIDE------ILDHPLRIPFLP--F  1047
             APEVL G  Y G + D+W+LG +LY ++  + PF  I+       I+D P   P LP   
Sbjct  128   APEVLGGNPY-GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNL  186

Query  1048  SEDCIDLIKKMLDRDVDNRLTITEVMEHPWM  1078
             SE+  DL+KK+L +D   RLT T+ ++HPW 
Sbjct  187   SEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 89.1 bits (222),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 124/285 (44%), Gaps = 57/285 (20%)

Query  819   VILEEMGQGAYGEVKLARLKKNPSK---KVVLKYVTKKRILVDTWTRDRRLGTVPLEIHV  875
              + E++G+GA+GEV    LK        KV +K       L +             E   
Sbjct  2     TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVK------TLKEGAD----------EEER  45

Query  876   LDYLR-----RDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYI-ELKVNMD  927
              D+L      +  L HPNIV++ G        YI  E MP G    DL D++ + K  + 
Sbjct  46    EDFLEEASIMKK-LDHPNIVKLLGVCTQGEPLYIVTEYMPGG----DLLDFLRKHKRKLT  100

Query  928   EVECRNIFRQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDV  987
               +  ++  Q+   + +L +K  V HRD+   N ++     +KI DFG +  I +  +  
Sbjct  101   LKDLLSMALQIAKGMEYLESKNFV-HRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYR  159

Query  988   FVGT-----IDYAAPEVLQGKSYRGKEQDIWALGILLYTIV-YKENPFYNID--EILD--  1037
                      I + APE L+   +  K  D+W+ G+LL+ I    E P+  +   E+L+  
Sbjct  160   -KRGGGKLPIKWMAPESLKDGKFTSK-SDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFL  217

Query  1038  ---HPLRIPFLPFSEDC----IDLIKKMLDRDVDNRLTITEVMEH  1075
                + L  P     E+C     DL+K+    D ++R T +E++E 
Sbjct  218   EDGYRLPQP-----ENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1394637860


Query= TCONS_00010500

Length=1062
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  201     2e-59
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            89.1    5e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 201 bits (513),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 80/271 (30%), Positives = 120/271 (44%), Gaps = 64/271 (24%)

Query  799   YVILEEMGQGAYGEVKLARLKKNPSKKVVLKYVTKKRILVDTWTRDRRLGTVPLEIHVLD  858
             Y +L ++G G++G V  A+ +    K V +K + K++I         R      EI +L 
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDT-GKIVAIKKIKKEKIKKKKDKNILR------EIKIL-  52

Query  859   YLRRDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYIELKVNMDEVECRNIF  916
               ++  L HPNIV +   FED  N Y+  E +  G     LFD +  K    E E + I 
Sbjct  53    --KK--LNHPNIVRLYDAFEDKDNLYLVLEYVEGG----SLFDLLSEKGAFSEREAKFIM  104

Query  917   RQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDVFVGTIDYA  976
             +Q+++ +                                             FVGT  Y 
Sbjct  105   KQILEGLES-------------------------------------GSSLTTFVGTPWYM  127

Query  977   APEVLQGKSYRGKEQDIWALGILLYTIVYKENPFYNIDE------ILDHPLRIPFLP--F  1028
             APEVL G  Y G + D+W+LG +LY ++  + PF  I+       I+D P   P LP   
Sbjct  128   APEVLGGNPY-GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNL  186

Query  1029  SEDCIDLIKKMLDRDVDNRLTITEVMEHPWM  1059
             SE+  DL+KK+L +D   RLT T+ ++HPW 
Sbjct  187   SEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 89.1 bits (222),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 124/285 (44%), Gaps = 57/285 (20%)

Query  800   VILEEMGQGAYGEVKLARLKKNPSK---KVVLKYVTKKRILVDTWTRDRRLGTVPLEIHV  856
              + E++G+GA+GEV    LK        KV +K       L +             E   
Sbjct  2     TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVK------TLKEGAD----------EEER  45

Query  857   LDYLR-----RDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYI-ELKVNMD  908
              D+L      +  L HPNIV++ G        YI  E MP G    DL D++ + K  + 
Sbjct  46    EDFLEEASIMKK-LDHPNIVKLLGVCTQGEPLYIVTEYMPGG----DLLDFLRKHKRKLT  100

Query  909   EVECRNIFRQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDV  968
               +  ++  Q+   + +L +K  V HRD+   N ++     +KI DFG +  I +  +  
Sbjct  101   LKDLLSMALQIAKGMEYLESKNFV-HRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYR  159

Query  969   FVGT-----IDYAAPEVLQGKSYRGKEQDIWALGILLYTIV-YKENPFYNID--EILD--  1018
                      I + APE L+   +  K  D+W+ G+LL+ I    E P+  +   E+L+  
Sbjct  160   -KRGGGKLPIKWMAPESLKDGKFTSK-SDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFL  217

Query  1019  ---HPLRIPFLPFSEDC----IDLIKKMLDRDVDNRLTITEVMEH  1056
                + L  P     E+C     DL+K+    D ++R T +E++E 
Sbjct  218   EDGYRLPQP-----ENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1367736216


Query= TCONS_00010501

Length=1081
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  201     2e-59
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            89.1    6e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 201 bits (513),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 80/271 (30%), Positives = 120/271 (44%), Gaps = 64/271 (24%)

Query  818   YVILEEMGQGAYGEVKLARLKKNPSKKVVLKYVTKKRILVDTWTRDRRLGTVPLEIHVLD  877
             Y +L ++G G++G V  A+ +    K V +K + K++I         R      EI +L 
Sbjct  1     YEVLRKLGSGSFGTVYKAKHRDT-GKIVAIKKIKKEKIKKKKDKNILR------EIKIL-  52

Query  878   YLRRDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYIELKVNMDEVECRNIF  935
               ++  L HPNIV +   FED  N Y+  E +  G     LFD +  K    E E + I 
Sbjct  53    --KK--LNHPNIVRLYDAFEDKDNLYLVLEYVEGG----SLFDLLSEKGAFSEREAKFIM  104

Query  936   RQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDVFVGTIDYA  995
             +Q+++ +                                             FVGT  Y 
Sbjct  105   KQILEGLES-------------------------------------GSSLTTFVGTPWYM  127

Query  996   APEVLQGKSYRGKEQDIWALGILLYTIVYKENPFYNIDE------ILDHPLRIPFLP--F  1047
             APEVL G  Y G + D+W+LG +LY ++  + PF  I+       I+D P   P LP   
Sbjct  128   APEVLGGNPY-GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNL  186

Query  1048  SEDCIDLIKKMLDRDVDNRLTITEVMEHPWM  1078
             SE+  DL+KK+L +D   RLT T+ ++HPW 
Sbjct  187   SEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 89.1 bits (222),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 124/285 (44%), Gaps = 57/285 (20%)

Query  819   VILEEMGQGAYGEVKLARLKKNPSK---KVVLKYVTKKRILVDTWTRDRRLGTVPLEIHV  875
              + E++G+GA+GEV    LK        KV +K       L +             E   
Sbjct  2     TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVK------TLKEGAD----------EEER  45

Query  876   LDYLR-----RDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYI-ELKVNMD  927
              D+L      +  L HPNIV++ G        YI  E MP G    DL D++ + K  + 
Sbjct  46    EDFLEEASIMKK-LDHPNIVKLLGVCTQGEPLYIVTEYMPGG----DLLDFLRKHKRKLT  100

Query  928   EVECRNIFRQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDV  987
               +  ++  Q+   + +L +K  V HRD+   N ++     +KI DFG +  I +  +  
Sbjct  101   LKDLLSMALQIAKGMEYLESKNFV-HRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYR  159

Query  988   FVGT-----IDYAAPEVLQGKSYRGKEQDIWALGILLYTIV-YKENPFYNID--EILD--  1037
                      I + APE L+   +  K  D+W+ G+LL+ I    E P+  +   E+L+  
Sbjct  160   -KRGGGKLPIKWMAPESLKDGKFTSK-SDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFL  217

Query  1038  ---HPLRIPFLPFSEDC----IDLIKKMLDRDVDNRLTITEVMEH  1075
                + L  P     E+C     DL+K+    D ++R T +E++E 
Sbjct  218   EDGYRLPQP-----ENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1394637860


Query= TCONS_00017170

Length=539
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  100     7e-25


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 100 bits (252),  Expect = 7e-25, Method: Composition-based stats.
 Identities = 37/129 (29%), Positives = 61/129 (47%), Gaps = 18/129 (14%)

Query  352  YVILEEMGQGAYGEVKLARLKKNPSKKVVLKYVTKKRILVDTWTRDRRLGTVPLEIHVLD  411
            Y +L ++G G++G V  A+ +    K V +K + K++I         R      EI +L 
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDT-GKIVAIKKIKKEKIKKKKDKNILR------EIKIL-  52

Query  412  YLRRDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYIELKVNMDEVECRNIF  469
              ++  L HPNIV +   FED  N Y+  E +  G     LFD +  K    E E + I 
Sbjct  53   --KK--LNHPNIVRLYDAFEDKDNLYLVLEYVEGG----SLFDLLSEKGAFSEREAKFIM  104

Query  470  RQVVDAIHH  478
            +Q+++ +  
Sbjct  105  KQILEGLES  113



Lambda      K        H        a         alpha
   0.318    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 678301568


Query= TCONS_00010502

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  196     1e-59
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            86.8    2e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 196 bits (501),  Expect = 1e-59, Method: Composition-based stats.
 Identities = 80/271 (30%), Positives = 120/271 (44%), Gaps = 64/271 (24%)

Query  352  YVILEEMGQGAYGEVKLARLKKNPSKKVVLKYVTKKRILVDTWTRDRRLGTVPLEIHVLD  411
            Y +L ++G G++G V  A+ +    K V +K + K++I         R      EI +L 
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDT-GKIVAIKKIKKEKIKKKKDKNILR------EIKIL-  52

Query  412  YLRRDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYIELKVNMDEVECRNIF  469
              ++  L HPNIV +   FED  N Y+  E +  G     LFD +  K    E E + I 
Sbjct  53   --KK--LNHPNIVRLYDAFEDKDNLYLVLEYVEGG----SLFDLLSEKGAFSEREAKFIM  104

Query  470  RQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDVFVGTIDYA  529
            +Q+++ +                                             FVGT  Y 
Sbjct  105  KQILEGLES-------------------------------------GSSLTTFVGTPWYM  127

Query  530  APEVLQGKSYRGKEQDIWALGILLYTIVYKENPFYNIDE------ILDHPLRIPFLP--F  581
            APEVL G  Y G + D+W+LG +LY ++  + PF  I+       I+D P   P LP   
Sbjct  128  APEVLGGNPY-GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNL  186

Query  582  SEDCIDLIKKMLDRDVDNRLTITEVMEHPWM  612
            SE+  DL+KK+L +D   RLT T+ ++HPW 
Sbjct  187  SEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 86.8 bits (216),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 124/285 (44%), Gaps = 57/285 (20%)

Query  353  VILEEMGQGAYGEVKLARLKKNPSK---KVVLKYVTKKRILVDTWTRDRRLGTVPLEIHV  409
             + E++G+GA+GEV    LK        KV +K       L +             E   
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVK------TLKEGAD----------EEER  45

Query  410  LDYLR-----RDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYI-ELKVNMD  461
             D+L      +  L HPNIV++ G        YI  E MP G    DL D++ + K  + 
Sbjct  46   EDFLEEASIMKK-LDHPNIVKLLGVCTQGEPLYIVTEYMPGG----DLLDFLRKHKRKLT  100

Query  462  EVECRNIFRQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDV  521
              +  ++  Q+   + +L +K  V HRD+   N ++     +KI DFG +  I +  +  
Sbjct  101  LKDLLSMALQIAKGMEYLESKNFV-HRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYR  159

Query  522  FVGT-----IDYAAPEVLQGKSYRGKEQDIWALGILLYTIV-YKENPFYNID--EILD--  571
                     I + APE L+   +  K  D+W+ G+LL+ I    E P+  +   E+L+  
Sbjct  160  -KRGGGKLPIKWMAPESLKDGKFTSK-SDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFL  217

Query  572  ---HPLRIPFLPFSEDC----IDLIKKMLDRDVDNRLTITEVMEH  609
               + L  P     E+C     DL+K+    D ++R T +E++E 
Sbjct  218  EDGYRLPQP-----ENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.319    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 781585844


Query= TCONS_00017171

Length=803
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  102     4e-25


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 102 bits (256),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 37/129 (29%), Positives = 61/129 (47%), Gaps = 18/129 (14%)

Query  616  YVILEEMGQGAYGEVKLARLKKNPSKKVVLKYVTKKRILVDTWTRDRRLGTVPLEIHVLD  675
            Y +L ++G G++G V  A+ +    K V +K + K++I         R      EI +L 
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDT-GKIVAIKKIKKEKIKKKKDKNILR------EIKIL-  52

Query  676  YLRRDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYIELKVNMDEVECRNIF  733
              ++  L HPNIV +   FED  N Y+  E +  G     LFD +  K    E E + I 
Sbjct  53   --KK--LNHPNIVRLYDAFEDKDNLYLVLEYVEGG----SLFDLLSEKGAFSEREAKFIM  104

Query  734  RQVVDAIHH  742
            +Q+++ +  
Sbjct  105  KQILEGLES  113



Lambda      K        H        a         alpha
   0.316    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1031702768


Query= TCONS_00010503

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  195     2e-60
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            86.4    1e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 195 bits (499),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 80/271 (30%), Positives = 120/271 (44%), Gaps = 64/271 (24%)

Query  239  YVILEEMGQGAYGEVKLARLKKNPSKKVVLKYVTKKRILVDTWTRDRRLGTVPLEIHVLD  298
            Y +L ++G G++G V  A+ +    K V +K + K++I         R      EI +L 
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDT-GKIVAIKKIKKEKIKKKKDKNILR------EIKIL-  52

Query  299  YLRRDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYIELKVNMDEVECRNIF  356
              ++  L HPNIV +   FED  N Y+  E +  G     LFD +  K    E E + I 
Sbjct  53   --KK--LNHPNIVRLYDAFEDKDNLYLVLEYVEGG----SLFDLLSEKGAFSEREAKFIM  104

Query  357  RQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDVFVGTIDYA  416
            +Q+++ +                                             FVGT  Y 
Sbjct  105  KQILEGLES-------------------------------------GSSLTTFVGTPWYM  127

Query  417  APEVLQGKSYRGKEQDIWALGILLYTIVYKENPFYNIDE------ILDHPLRIPFLP--F  468
            APEVL G  Y G + D+W+LG +LY ++  + PF  I+       I+D P   P LP   
Sbjct  128  APEVLGGNPY-GPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNL  186

Query  469  SEDCIDLIKKMLDRDVDNRLTITEVMEHPWM  499
            SE+  DL+KK+L +D   RLT T+ ++HPW 
Sbjct  187  SEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 86.4 bits (215),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 124/285 (44%), Gaps = 57/285 (20%)

Query  240  VILEEMGQGAYGEVKLARLKKNPSK---KVVLKYVTKKRILVDTWTRDRRLGTVPLEIHV  296
             + E++G+GA+GEV    LK        KV +K       L +             E   
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVK------TLKEGAD----------EEER  45

Query  297  LDYLR-----RDGLKHPNIVEMEGFFEDDVNYYI--EMMPHGLPGMDLFDYI-ELKVNMD  348
             D+L      +  L HPNIV++ G        YI  E MP G    DL D++ + K  + 
Sbjct  46   EDFLEEASIMKK-LDHPNIVKLLGVCTQGEPLYIVTEYMPGG----DLLDFLRKHKRKLT  100

Query  349  EVECRNIFRQVVDAIHHLHTKALVVHRDIKDENVILDGEGRIKIIDFGSAAYIKNGPFDV  408
              +  ++  Q+   + +L +K  V HRD+   N ++     +KI DFG +  I +  +  
Sbjct  101  LKDLLSMALQIAKGMEYLESKNFV-HRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYR  159

Query  409  FVGT-----IDYAAPEVLQGKSYRGKEQDIWALGILLYTIV-YKENPFYNID--EILD--  458
                     I + APE L+   +  K  D+W+ G+LL+ I    E P+  +   E+L+  
Sbjct  160  -KRGGGKLPIKWMAPESLKDGKFTSK-SDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFL  217

Query  459  ---HPLRIPFLPFSEDC----IDLIKKMLDRDVDNRLTITEVMEH  496
               + L  P     E+C     DL+K+    D ++R T +E++E 
Sbjct  218  EDGYRLPQP-----ENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.318    0.137    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00017172

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.123    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0691    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00017173

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.123    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00017174

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00010505

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.123    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00010507

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.123    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00010508

Length=730
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:374955 pfam17034, zinc_ribbon_16, Zinc-ribbon like family. Th...  88.2    2e-21


>CDD:374955 pfam17034, zinc_ribbon_16, Zinc-ribbon like family.  This family 
is found at the C-terminus of WD40 repeat structures in 
eukaryotes.
Length=125

 Score = 88.2 bits (218),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 41/130 (32%), Positives = 64/130 (49%), Gaps = 11/130 (8%)

Query  602  CNYCTRPLTQHDASSQFSPSASGEGAHQTAGNPLGTAVMSGMVCARCGRPMPRCGVCTLW  661
            CN+C + +T   +    +   S      + G      +    +C  C +P+PRC VC L 
Sbjct  1    CNFCNKSITPFSSKHHTNIQQSNV---PSTGGRKFVNISKSTLCPACSQPLPRCAVCGLS  57

Query  662  MGS---PDPMSRACIAADAGQEQRKPTEADIMRRFIVFCINCNHGFHAHHAREWFAKHKV  718
            +G+    +  SR        Q+  K  E     ++  FC++C HG HA HA EWF+ H +
Sbjct  58   LGTSNLTNKDSRRKSVVKDPQDFEKLFE-----KWFSFCLSCGHGSHADHATEWFSTHSI  112

Query  719  CPVAECSCIC  728
            CPVA+C+C+C
Sbjct  113  CPVADCNCLC  122



Lambda      K        H        a         alpha
   0.319    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 925476672


Query= TCONS_00010509

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:374955 pfam17034, zinc_ribbon_16, Zinc-ribbon like family. Th...  85.5    1e-20


>CDD:374955 pfam17034, zinc_ribbon_16, Zinc-ribbon like family.  This family 
is found at the C-terminus of WD40 repeat structures in 
eukaryotes.
Length=125

 Score = 85.5 bits (211),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 41/130 (32%), Positives = 64/130 (49%), Gaps = 11/130 (8%)

Query  305  CNYCTRPLTQHDASSQFSPSASGEGAHQTAGNPLGTAVMSGMVCARCGRPMPRCGVCTLW  364
            CN+C + +T   +    +   S      + G      +    +C  C +P+PRC VC L 
Sbjct  1    CNFCNKSITPFSSKHHTNIQQSNV---PSTGGRKFVNISKSTLCPACSQPLPRCAVCGLS  57

Query  365  MGS---PDPMSRACIAADAGQEQRKPTEADIMRRFIVFCINCNHGFHAHHAREWFAKHKV  421
            +G+    +  SR        Q+  K  E     ++  FC++C HG HA HA EWF+ H +
Sbjct  58   LGTSNLTNKDSRRKSVVKDPQDFEKLFE-----KWFSFCLSCGHGSHADHATEWFSTHSI  112

Query  422  CPVAECSCIC  431
            CPVA+C+C+C
Sbjct  113  CPVADCNCLC  122



Lambda      K        H        a         alpha
   0.321    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00010510

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 ...  235     3e-78


>CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 / KptA 
family.  Tpt1 catalyzes the last step of tRNA splicing in yeast. 
It transfers the splice junction 2'-phosphate from ligated 
tRNA to NAD, to produce ADP-ribose 1"-2"-cyclic phosphate. 
This is presumed to be followed by a transesterification 
step to release the RNA. The first step of this reaction is 
similar to that catalyzed by some bacterial toxins. E. coli 
KptA and mouse Tpt1 are likely to use the same reaction mechanism.
Length=168

 Score = 235 bits (602),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 105/255 (41%), Positives = 125/255 (49%), Gaps = 87/255 (34%)

Query  19   ISKALSLLLRHAAEKEGLKMDSQGYANVADVLAWKKLKSLKVTLPEIIHAVASSDKKRFA  78
            ISKALS LLRH AEKEGLK+D  GY +V D+LA  +LKSLKVTL ++   VA++DKKRF 
Sbjct  1    ISKALSYLLRHGAEKEGLKLDPDGYVSVDDLLAHPRLKSLKVTLEDLQRVVATNDKKRFE  60

Query  79   LLHIPSAKALSDKTTTGAREGETPVCETEPSSMPTSQVPTTSAGQENATATALAVNDTDP  138
            L                                                           
Sbjct  61   L---------------------------------------------------------KE  63

Query  139  SHFLIRATQGHSIKSVDAAAFLERLTLEDESRLPDTVVHGTYHPVWPAILQSGGLRCMGR  198
              +LIRA QGHSI  VD    LE +T  D   LP  +VHGTY   WP IL SGGL+ MGR
Sbjct  64   DGWLIRANQGHSIP-VDV---LEPITPADP--LPTVLVHGTYFQAWPLIL-SGGLKRMGR  116

Query  199  NQVHFATGPSVESVLPAHVDGTAHSAMGSSGLNDGRVISGMRRDAQILIYIDIKKAMAAG  258
            N +H ATG                       L    VISGMR  + +LIYID++KA+A G
Sbjct  117  NHIHLATG-----------------------LPGEAVISGMRHSSPVLIYIDVRKALADG  153

Query  259  CPFWRSENGVILSEG  273
              F+RSENGVIL+EG
Sbjct  154  IKFYRSENGVILTEG  168



Lambda      K        H        a         alpha
   0.314    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00010511

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 ...  235     3e-78


>CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 / KptA 
family.  Tpt1 catalyzes the last step of tRNA splicing in yeast. 
It transfers the splice junction 2'-phosphate from ligated 
tRNA to NAD, to produce ADP-ribose 1"-2"-cyclic phosphate. 
This is presumed to be followed by a transesterification 
step to release the RNA. The first step of this reaction is 
similar to that catalyzed by some bacterial toxins. E. coli 
KptA and mouse Tpt1 are likely to use the same reaction mechanism.
Length=168

 Score = 235 bits (602),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 105/255 (41%), Positives = 125/255 (49%), Gaps = 87/255 (34%)

Query  19   ISKALSLLLRHAAEKEGLKMDSQGYANVADVLAWKKLKSLKVTLPEIIHAVASSDKKRFA  78
            ISKALS LLRH AEKEGLK+D  GY +V D+LA  +LKSLKVTL ++   VA++DKKRF 
Sbjct  1    ISKALSYLLRHGAEKEGLKLDPDGYVSVDDLLAHPRLKSLKVTLEDLQRVVATNDKKRFE  60

Query  79   LLHIPSAKALSDKTTTGAREGETPVCETEPSSMPTSQVPTTSAGQENATATALAVNDTDP  138
            L                                                           
Sbjct  61   L---------------------------------------------------------KE  63

Query  139  SHFLIRATQGHSIKSVDAAAFLERLTLEDESRLPDTVVHGTYHPVWPAILQSGGLRCMGR  198
              +LIRA QGHSI  VD    LE +T  D   LP  +VHGTY   WP IL SGGL+ MGR
Sbjct  64   DGWLIRANQGHSIP-VDV---LEPITPADP--LPTVLVHGTYFQAWPLIL-SGGLKRMGR  116

Query  199  NQVHFATGPSVESVLPAHVDGTAHSAMGSSGLNDGRVISGMRRDAQILIYIDIKKAMAAG  258
            N +H ATG                       L    VISGMR  + +LIYID++KA+A G
Sbjct  117  NHIHLATG-----------------------LPGEAVISGMRHSSPVLIYIDVRKALADG  153

Query  259  CPFWRSENGVILSEG  273
              F+RSENGVIL+EG
Sbjct  154  IKFYRSENGVILTEG  168



Lambda      K        H        a         alpha
   0.314    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00010512

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 ...  156     8e-49


>CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 / KptA 
family.  Tpt1 catalyzes the last step of tRNA splicing in yeast. 
It transfers the splice junction 2'-phosphate from ligated 
tRNA to NAD, to produce ADP-ribose 1"-2"-cyclic phosphate. 
This is presumed to be followed by a transesterification 
step to release the RNA. The first step of this reaction is 
similar to that catalyzed by some bacterial toxins. E. coli 
KptA and mouse Tpt1 are likely to use the same reaction mechanism.
Length=168

 Score = 156 bits (396),  Expect = 8e-49, Method: Composition-based stats.
 Identities = 65/137 (47%), Positives = 77/137 (56%), Gaps = 30/137 (22%)

Query  27   DPSHFLIRATQGHSIKSVDAAAFLERLTLEDESRLPDTVVHGTYHPVWPAILQSGGLRCM  86
                +LIRA QGHSI  VD    LE +T  D   LP  +VHGTY   WP IL SGGL+ M
Sbjct  62   KEDGWLIRANQGHSIP-VDV---LEPITPADP--LPTVLVHGTYFQAWPLIL-SGGLKRM  114

Query  87   GRNQVHFATGPSVESVLPAHVDGTAHSAMGSSGLNDGRVISGMRRDAQILIYIDIKKAMA  146
            GRN +H ATG                       L    VISGMR  + +LIYID++KA+A
Sbjct  115  GRNHIHLATG-----------------------LPGEAVISGMRHSSPVLIYIDVRKALA  151

Query  147  AGCPFWRSENGVILSEG  163
             G  F+RSENGVIL+EG
Sbjct  152  DGIKFYRSENGVILTEG  168



Lambda      K        H        a         alpha
   0.315    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00017177

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 ...  235     3e-78


>CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 / KptA 
family.  Tpt1 catalyzes the last step of tRNA splicing in yeast. 
It transfers the splice junction 2'-phosphate from ligated 
tRNA to NAD, to produce ADP-ribose 1"-2"-cyclic phosphate. 
This is presumed to be followed by a transesterification 
step to release the RNA. The first step of this reaction is 
similar to that catalyzed by some bacterial toxins. E. coli 
KptA and mouse Tpt1 are likely to use the same reaction mechanism.
Length=168

 Score = 235 bits (602),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 105/255 (41%), Positives = 125/255 (49%), Gaps = 87/255 (34%)

Query  19   ISKALSLLLRHAAEKEGLKMDSQGYANVADVLAWKKLKSLKVTLPEIIHAVASSDKKRFA  78
            ISKALS LLRH AEKEGLK+D  GY +V D+LA  +LKSLKVTL ++   VA++DKKRF 
Sbjct  1    ISKALSYLLRHGAEKEGLKLDPDGYVSVDDLLAHPRLKSLKVTLEDLQRVVATNDKKRFE  60

Query  79   LLHIPSAKALSDKTTTGAREGETPVCETEPSSMPTSQVPTTSAGQENATATALAVNDTDP  138
            L                                                           
Sbjct  61   L---------------------------------------------------------KE  63

Query  139  SHFLIRATQGHSIKSVDAAAFLERLTLEDESRLPDTVVHGTYHPVWPAILQSGGLRCMGR  198
              +LIRA QGHSI  VD    LE +T  D   LP  +VHGTY   WP IL SGGL+ MGR
Sbjct  64   DGWLIRANQGHSIP-VDV---LEPITPADP--LPTVLVHGTYFQAWPLIL-SGGLKRMGR  116

Query  199  NQVHFATGPSVESVLPAHVDGTAHSAMGSSGLNDGRVISGMRRDAQILIYIDIKKAMAAG  258
            N +H ATG                       L    VISGMR  + +LIYID++KA+A G
Sbjct  117  NHIHLATG-----------------------LPGEAVISGMRHSSPVLIYIDVRKALADG  153

Query  259  CPFWRSENGVILSEG  273
              F+RSENGVIL+EG
Sbjct  154  IKFYRSENGVILTEG  168



Lambda      K        H        a         alpha
   0.314    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00010513

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 ...  235     3e-78


>CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 / KptA 
family.  Tpt1 catalyzes the last step of tRNA splicing in yeast. 
It transfers the splice junction 2'-phosphate from ligated 
tRNA to NAD, to produce ADP-ribose 1"-2"-cyclic phosphate. 
This is presumed to be followed by a transesterification 
step to release the RNA. The first step of this reaction is 
similar to that catalyzed by some bacterial toxins. E. coli 
KptA and mouse Tpt1 are likely to use the same reaction mechanism.
Length=168

 Score = 235 bits (602),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 105/255 (41%), Positives = 125/255 (49%), Gaps = 87/255 (34%)

Query  19   ISKALSLLLRHAAEKEGLKMDSQGYANVADVLAWKKLKSLKVTLPEIIHAVASSDKKRFA  78
            ISKALS LLRH AEKEGLK+D  GY +V D+LA  +LKSLKVTL ++   VA++DKKRF 
Sbjct  1    ISKALSYLLRHGAEKEGLKLDPDGYVSVDDLLAHPRLKSLKVTLEDLQRVVATNDKKRFE  60

Query  79   LLHIPSAKALSDKTTTGAREGETPVCETEPSSMPTSQVPTTSAGQENATATALAVNDTDP  138
            L                                                           
Sbjct  61   L---------------------------------------------------------KE  63

Query  139  SHFLIRATQGHSIKSVDAAAFLERLTLEDESRLPDTVVHGTYHPVWPAILQSGGLRCMGR  198
              +LIRA QGHSI  VD    LE +T  D   LP  +VHGTY   WP IL SGGL+ MGR
Sbjct  64   DGWLIRANQGHSIP-VDV---LEPITPADP--LPTVLVHGTYFQAWPLIL-SGGLKRMGR  116

Query  199  NQVHFATGPSVESVLPAHVDGTAHSAMGSSGLNDGRVISGMRRDAQILIYIDIKKAMAAG  258
            N +H ATG                       L    VISGMR  + +LIYID++KA+A G
Sbjct  117  NHIHLATG-----------------------LPGEAVISGMRHSSPVLIYIDVRKALADG  153

Query  259  CPFWRSENGVILSEG  273
              F+RSENGVIL+EG
Sbjct  154  IKFYRSENGVILTEG  168



Lambda      K        H        a         alpha
   0.314    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00010514

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 ...  156     8e-49


>CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 / KptA 
family.  Tpt1 catalyzes the last step of tRNA splicing in yeast. 
It transfers the splice junction 2'-phosphate from ligated 
tRNA to NAD, to produce ADP-ribose 1"-2"-cyclic phosphate. 
This is presumed to be followed by a transesterification 
step to release the RNA. The first step of this reaction is 
similar to that catalyzed by some bacterial toxins. E. coli 
KptA and mouse Tpt1 are likely to use the same reaction mechanism.
Length=168

 Score = 156 bits (396),  Expect = 8e-49, Method: Composition-based stats.
 Identities = 65/137 (47%), Positives = 77/137 (56%), Gaps = 30/137 (22%)

Query  27   DPSHFLIRATQGHSIKSVDAAAFLERLTLEDESRLPDTVVHGTYHPVWPAILQSGGLRCM  86
                +LIRA QGHSI  VD    LE +T  D   LP  +VHGTY   WP IL SGGL+ M
Sbjct  62   KEDGWLIRANQGHSIP-VDV---LEPITPADP--LPTVLVHGTYFQAWPLIL-SGGLKRM  114

Query  87   GRNQVHFATGPSVESVLPAHVDGTAHSAMGSSGLNDGRVISGMRRDAQILIYIDIKKAMA  146
            GRN +H ATG                       L    VISGMR  + +LIYID++KA+A
Sbjct  115  GRNHIHLATG-----------------------LPGEAVISGMRHSSPVLIYIDVRKALA  151

Query  147  AGCPFWRSENGVILSEG  163
             G  F+RSENGVIL+EG
Sbjct  152  DGIKFYRSENGVILTEG  168



Lambda      K        H        a         alpha
   0.315    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00017178

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425863 pfam00775, Dioxygenase_C, Dioxygenase                      179     4e-57
CDD:427951 pfam04444, Dioxygenase_N, Catechol dioxygenase N-termi...  113     8e-33


>CDD:425863 pfam00775, Dioxygenase_C, Dioxygenase.  
Length=181

 Score = 179 bits (457),  Expect = 4e-57, Method: Composition-based stats.
 Identities = 73/180 (41%), Positives = 102/180 (57%), Gaps = 3/180 (2%)

Query  105  ILGPFFRADTPYRNNGDNIVKDVPDGEMVFMHGRVIDFQTKKPLVGATVEVWQASTNGLY  164
            I GP +    P   +   +    P GE + + GRV D    KPL GA VE+W A+  G Y
Sbjct  1    IEGPLYVEGAPSDEDLARMDDGDPIGEPLILSGRVFD-AAGKPLAGALVEIWHANDEGRY  59

Query  165  EQQDP-NQEEFNLRGKFKTDADGRYYFYCLRPTPYPVPNDGPAGKLLELMDRHPFRPAHI  223
               DP    E N RG+  TD+ G Y F  ++P PYP+PNDGP GKLL+ + RH +RPAHI
Sbjct  60   SHFDPTEAPEPNFRGRILTDSQGSYRFRTIQPAPYPIPNDGPTGKLLDALGRHAWRPAHI  119

Query  224  HIIATHDGYKPLTTQIFDRQDKYLTNDSVFAVKDSLIVDFVPRKD-DPQAGLELEYDVKL  282
            H   +  G++ LTTQ++   D YL +D  +AV+  L+ ++  R+D  P+  LE  +D  L
Sbjct  120  HFFISAPGHRRLTTQLYFEGDPYLPDDIAYAVRQGLVANYDEREDGTPEKFLEYHFDFVL  179


>CDD:427951 pfam04444, Dioxygenase_N, Catechol dioxygenase N-terminus.  This 
family consists of the N termini of catechol, chlorocatechol 
or hydroxyquinol 1,2-dioxygenase proteins. This region 
is always found adjacent to the dioxygenase domain (pfam00775).
Length=75

 Score = 113 bits (286),  Expect = 8e-33, Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 46/67 (69%), Gaps = 0/67 (0%)

Query  23  NPRFRKVMASLIRHVHDFARENELTVDEWMAGVKLLNWAGQMSDDKRNEGQLVCDVIGLE  82
           +PR +++M  L+RH+HDF RE +LT +EW A V  L   GQM DDKR E  L+ DV+G+E
Sbjct  1   DPRLKEIMRRLVRHLHDFIREVDLTPEEWWAAVDFLTRVGQMCDDKRQEFILLSDVLGVE  60

Query  83  SLVDEIT  89
            LVD I 
Sbjct  61  HLVDAIN  67



Lambda      K        H        a         alpha
   0.320    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00017179

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 ...  235     3e-78


>CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 / KptA 
family.  Tpt1 catalyzes the last step of tRNA splicing in yeast. 
It transfers the splice junction 2'-phosphate from ligated 
tRNA to NAD, to produce ADP-ribose 1"-2"-cyclic phosphate. 
This is presumed to be followed by a transesterification 
step to release the RNA. The first step of this reaction is 
similar to that catalyzed by some bacterial toxins. E. coli 
KptA and mouse Tpt1 are likely to use the same reaction mechanism.
Length=168

 Score = 235 bits (602),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 105/255 (41%), Positives = 125/255 (49%), Gaps = 87/255 (34%)

Query  19   ISKALSLLLRHAAEKEGLKMDSQGYANVADVLAWKKLKSLKVTLPEIIHAVASSDKKRFA  78
            ISKALS LLRH AEKEGLK+D  GY +V D+LA  +LKSLKVTL ++   VA++DKKRF 
Sbjct  1    ISKALSYLLRHGAEKEGLKLDPDGYVSVDDLLAHPRLKSLKVTLEDLQRVVATNDKKRFE  60

Query  79   LLHIPSAKALSDKTTTGAREGETPVCETEPSSMPTSQVPTTSAGQENATATALAVNDTDP  138
            L                                                           
Sbjct  61   L---------------------------------------------------------KE  63

Query  139  SHFLIRATQGHSIKSVDAAAFLERLTLEDESRLPDTVVHGTYHPVWPAILQSGGLRCMGR  198
              +LIRA QGHSI  VD    LE +T  D   LP  +VHGTY   WP IL SGGL+ MGR
Sbjct  64   DGWLIRANQGHSIP-VDV---LEPITPADP--LPTVLVHGTYFQAWPLIL-SGGLKRMGR  116

Query  199  NQVHFATGPSVESVLPAHVDGTAHSAMGSSGLNDGRVISGMRRDAQILIYIDIKKAMAAG  258
            N +H ATG                       L    VISGMR  + +LIYID++KA+A G
Sbjct  117  NHIHLATG-----------------------LPGEAVISGMRHSSPVLIYIDVRKALADG  153

Query  259  CPFWRSENGVILSEG  273
              F+RSENGVIL+EG
Sbjct  154  IKFYRSENGVILTEG  168



Lambda      K        H        a         alpha
   0.314    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00010515

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 ...  235     3e-78


>CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 / KptA 
family.  Tpt1 catalyzes the last step of tRNA splicing in yeast. 
It transfers the splice junction 2'-phosphate from ligated 
tRNA to NAD, to produce ADP-ribose 1"-2"-cyclic phosphate. 
This is presumed to be followed by a transesterification 
step to release the RNA. The first step of this reaction is 
similar to that catalyzed by some bacterial toxins. E. coli 
KptA and mouse Tpt1 are likely to use the same reaction mechanism.
Length=168

 Score = 235 bits (602),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 105/255 (41%), Positives = 125/255 (49%), Gaps = 87/255 (34%)

Query  19   ISKALSLLLRHAAEKEGLKMDSQGYANVADVLAWKKLKSLKVTLPEIIHAVASSDKKRFA  78
            ISKALS LLRH AEKEGLK+D  GY +V D+LA  +LKSLKVTL ++   VA++DKKRF 
Sbjct  1    ISKALSYLLRHGAEKEGLKLDPDGYVSVDDLLAHPRLKSLKVTLEDLQRVVATNDKKRFE  60

Query  79   LLHIPSAKALSDKTTTGAREGETPVCETEPSSMPTSQVPTTSAGQENATATALAVNDTDP  138
            L                                                           
Sbjct  61   L---------------------------------------------------------KE  63

Query  139  SHFLIRATQGHSIKSVDAAAFLERLTLEDESRLPDTVVHGTYHPVWPAILQSGGLRCMGR  198
              +LIRA QGHSI  VD    LE +T  D   LP  +VHGTY   WP IL SGGL+ MGR
Sbjct  64   DGWLIRANQGHSIP-VDV---LEPITPADP--LPTVLVHGTYFQAWPLIL-SGGLKRMGR  116

Query  199  NQVHFATGPSVESVLPAHVDGTAHSAMGSSGLNDGRVISGMRRDAQILIYIDIKKAMAAG  258
            N +H ATG                       L    VISGMR  + +LIYID++KA+A G
Sbjct  117  NHIHLATG-----------------------LPGEAVISGMRHSSPVLIYIDVRKALADG  153

Query  259  CPFWRSENGVILSEG  273
              F+RSENGVIL+EG
Sbjct  154  IKFYRSENGVILTEG  168



Lambda      K        H        a         alpha
   0.314    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00010516

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 ...  235     3e-78


>CDD:460371 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 / KptA 
family.  Tpt1 catalyzes the last step of tRNA splicing in yeast. 
It transfers the splice junction 2'-phosphate from ligated 
tRNA to NAD, to produce ADP-ribose 1"-2"-cyclic phosphate. 
This is presumed to be followed by a transesterification 
step to release the RNA. The first step of this reaction is 
similar to that catalyzed by some bacterial toxins. E. coli 
KptA and mouse Tpt1 are likely to use the same reaction mechanism.
Length=168

 Score = 235 bits (602),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 105/255 (41%), Positives = 125/255 (49%), Gaps = 87/255 (34%)

Query  19   ISKALSLLLRHAAEKEGLKMDSQGYANVADVLAWKKLKSLKVTLPEIIHAVASSDKKRFA  78
            ISKALS LLRH AEKEGLK+D  GY +V D+LA  +LKSLKVTL ++   VA++DKKRF 
Sbjct  1    ISKALSYLLRHGAEKEGLKLDPDGYVSVDDLLAHPRLKSLKVTLEDLQRVVATNDKKRFE  60

Query  79   LLHIPSAKALSDKTTTGAREGETPVCETEPSSMPTSQVPTTSAGQENATATALAVNDTDP  138
            L                                                           
Sbjct  61   L---------------------------------------------------------KE  63

Query  139  SHFLIRATQGHSIKSVDAAAFLERLTLEDESRLPDTVVHGTYHPVWPAILQSGGLRCMGR  198
              +LIRA QGHSI  VD    LE +T  D   LP  +VHGTY   WP IL SGGL+ MGR
Sbjct  64   DGWLIRANQGHSIP-VDV---LEPITPADP--LPTVLVHGTYFQAWPLIL-SGGLKRMGR  116

Query  199  NQVHFATGPSVESVLPAHVDGTAHSAMGSSGLNDGRVISGMRRDAQILIYIDIKKAMAAG  258
            N +H ATG                       L    VISGMR  + +LIYID++KA+A G
Sbjct  117  NHIHLATG-----------------------LPGEAVISGMRHSSPVLIYIDVRKALADG  153

Query  259  CPFWRSENGVILSEG  273
              F+RSENGVIL+EG
Sbjct  154  IKFYRSENGVILTEG  168



Lambda      K        H        a         alpha
   0.314    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00010517

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460930 pfam03463, eRF1_1, eRF1 domain 1. The release factor e...  168     3e-52
CDD:397503 pfam03465, eRF1_3, eRF1 domain 3. The release factor e...  108     1e-29
CDD:397502 pfam03464, eRF1_2, eRF1 domain 2. The release factor e...  69.2    6e-15


>CDD:460930 pfam03463, eRF1_1, eRF1 domain 1.  The release factor eRF1 terminates 
protein biosynthesis by recognising stop codons at 
the A site of the ribosome and stimulating peptidyl-tRNA bond 
hydrolysis at the peptidyl transferase centre. The crystal 
structure of human eRF1 is known. The overall shape and dimensions 
of eRF1 resemble a tRNA molecule with domains 1, 2, 
and 3 of eRF1 corresponding to the anticodon loop, aminoacyl 
acceptor stem, and T stem of a tRNA molecule, respectively. 
The position of the essential GGQ motif at an exposed tip of 
domain 2 suggests that the Gln residue coordinates a water 
molecule to mediate the hydrolytic activity at the peptidyl 
transferase centre. A conserved groove on domain 1, 80 A from 
the GGQ motif, is proposed to form the codon recognition 
site. This family also includes other proteins for which the 
precise molecular function is unknown. Many of them are from 
Archaebacteria. These proteins may also be involved in translation 
termination but this awaits experimental verification.
Length=122

 Score = 168 bits (429),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 59/136 (43%), Positives = 80/136 (59%), Gaps = 14/136 (10%)

Query  1    MRLIKNKIEHGGSGTVTLCPEEPEDMWHAYNLIRPGDLLRASAIRRVTTTHDTGTTTSSR  60
            M+L+K  IE  G+G +TL PE  +D+WH YNLIRPGD + A+  R+VT         S R
Sbjct  1    MKLLKEDIEGDGTGLITLYPEPDDDLWHLYNLIRPGDGVAANTKRKVTRES------SER  54

Query  61   VHLTLEIRVKSLDFDPQSSQLHVGGTIVNETPHTKVGQHHTLDLELNRNFTLEKEIGANG  120
            V L L I V+ L FD ++  L V GTIV E  H K+G++HTLD+E  R  T+ K      
Sbjct  55   VLLALTIIVERLKFDKKNGLLRVKGTIVEENEHVKLGKYHTLDIEPPRPITIIKY-----  109

Query  121  EGVGWDSIAVQMLQDA  136
                WD  A++ L++A
Sbjct  110  ---RWDKFALERLKEA  122


>CDD:397503 pfam03465, eRF1_3, eRF1 domain 3.  The release factor eRF1 terminates 
protein biosynthesis by recognising stop codons at 
the A site of the ribosome and stimulating peptidyl-tRNA bond 
hydrolysis at the peptidyl transferase centre. The crystal 
structure of human eRF1 is known. The overall shape and dimensions 
of eRF1 resemble a tRNA molecule with domains 1, 2, 
and 3 of eRF1 corresponding to the anticodon loop, aminoacyl 
acceptor stem, and T stem of a tRNA molecule, respectively. 
The position of the essential GGQ motif at an exposed tip of 
domain 2 suggests that the Gln residue coordinates a water 
molecule to mediate the hydrolytic activity at the peptidyl 
transferase centre. A conserved groove on domain 1, 80 A from 
the GGQ motif, is proposed to form the codon recognition 
site. This family also includes other proteins for which the 
precise molecular function is unknown. Many of them are from 
Archaebacteria. These proteins may also be involved in translation 
termination but this awaits experimental verification.
Length=100

 Score = 108 bits (273),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 43/105 (41%), Positives = 65/105 (62%), Gaps = 5/105 (5%)

Query  291  YARETKLMDDFLGHLRKETNKAIYGPREVEAAVDQGAVGRGGGVLIISNRLFRSQDVAER  350
             A+E KL+++FL  L K+T  A+YG  EV  A++ GAV      L+IS+ L RS+DVA R
Sbjct  1    IAQEKKLLEEFLEELAKDTGLAVYGVEEVLKALEMGAV----ETLLISDELLRSRDVATR  56

Query  351  KRWVSLVDRVRDVEGGEVRVLSSDHESGRRLDGLGGVAALCTFPV  395
             +   LV+   +  GG+V ++S + E G +L G GG+AA+  + V
Sbjct  57   NKIEWLVENAEES-GGKVEIVSDESEEGEQLKGFGGIAAILRYKV  100


>CDD:397502 pfam03464, eRF1_2, eRF1 domain 2.  The release factor eRF1 terminates 
protein biosynthesis by recognising stop codons at 
the A site of the ribosome and stimulating peptidyl-tRNA bond 
hydrolysis at the peptidyl transferase centre. The crystal 
structure of human eRF1 is known. The overall shape and dimensions 
of eRF1 resemble a tRNA molecule with domains 1, 2, 
and 3 of eRF1 corresponding to the anticodon loop, aminoacyl 
acceptor stem, and T stem of a tRNA molecule, respectively. 
The position of the essential GGQ motif at an exposed tip of 
domain 2 suggests that the Gln residue coordinates a water 
molecule to mediate the hydrolytic activity at the peptidyl 
transferase centre. A conserved groove on domain 1, 80 A from 
the GGQ motif, is proposed to form the codon recognition 
site. This family also includes other proteins for which the 
precise molecular function is unknown. Many of them are from 
Archaebacteria. These proteins may also be involved in translation 
termination but this awaits experimental verification.
Length=133

 Score = 69.2 bits (170),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 55/147 (37%), Gaps = 24/147 (16%)

Query  149  AVVMQEGLAHICFIGQFQTVLKQKVEMSVPRKR------QGGGGGDHDKGMSKFYQVTLD  202
            A+VM EG A I  +   +T +  K+E+S+P K               D+    FY+    
Sbjct  4    AIVMDEGEATIGLLTGSRTEVLAKIEVSIPGKHGRGGQSARRFARLRDEARHNFYK----  59

Query  203  TLLRQMEFNTSATSLTSNEPVKPVLLASPGFVAAGFQKYIQSVASTTTPALKRLLPS-IV  261
               +  E    A      + VK ++LA PGF    F       A         L    I 
Sbjct  60   ---KVGEAANQAFIHVDKDVVKGIILAGPGFTKEEFYDGDYLDA--------ELKDKVIK  108

Query  262  VVHSASGYLHSLAEVLQSPAVKTILAD  288
            +V  + G  H L E L+      +L+D
Sbjct  109  LVDVSYGGEHGLNEALE--KAADVLSD  133



Lambda      K        H        a         alpha
   0.316    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00010518

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425863 pfam00775, Dioxygenase_C, Dioxygenase                      137     4e-41
CDD:427951 pfam04444, Dioxygenase_N, Catechol dioxygenase N-termi...  114     8e-34


>CDD:425863 pfam00775, Dioxygenase_C, Dioxygenase.  
Length=181

 Score = 137 bits (346),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 55/125 (44%), Positives = 71/125 (57%), Gaps = 2/125 (2%)

Query  105  ILGPFFRADTPYRNNGDNIVKDVPDGEMVFMHGRVIDFQTKKPLVGATVEVWQASTNGLY  164
            I GP +    P   +   +    P GE + + GRV D    KPL GA VE+W A+  G Y
Sbjct  1    IEGPLYVEGAPSDEDLARMDDGDPIGEPLILSGRVFD-AAGKPLAGALVEIWHANDEGRY  59

Query  165  EQQDP-NQEEFNLRGKFKTDADGRYYFYCLRPTPYPVPNDGPAGKLLELMDRHPFRPAHI  223
               DP    E N RG+  TD+ G Y F  ++P PYP+PNDGP GKLL+ + RH +RPAHI
Sbjct  60   SHFDPTEAPEPNFRGRILTDSQGSYRFRTIQPAPYPIPNDGPTGKLLDALGRHAWRPAHI  119

Query  224  HIIVS  228
            H  +S
Sbjct  120  HFFIS  124


>CDD:427951 pfam04444, Dioxygenase_N, Catechol dioxygenase N-terminus.  This 
family consists of the N termini of catechol, chlorocatechol 
or hydroxyquinol 1,2-dioxygenase proteins. This region 
is always found adjacent to the dioxygenase domain (pfam00775).
Length=75

 Score = 114 bits (288),  Expect = 8e-34, Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 46/67 (69%), Gaps = 0/67 (0%)

Query  23  NPRFRKVMASLIRHVHDFARENELTVDEWMAGVKLLNWAGQMSDDKRNEGQLVCDVIGLE  82
           +PR +++M  L+RH+HDF RE +LT +EW A V  L   GQM DDKR E  L+ DV+G+E
Sbjct  1   DPRLKEIMRRLVRHLHDFIREVDLTPEEWWAAVDFLTRVGQMCDDKRQEFILLSDVLGVE  60

Query  83  SLVDEIT  89
            LVD I 
Sbjct  61  HLVDAIN  67



Lambda      K        H        a         alpha
   0.321    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00010519

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  76.0    4e-18


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 76.0 bits (187),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 34/115 (30%), Positives = 53/115 (46%), Gaps = 3/115 (3%)

Query  27   TIVFIHGLGSSQNYYFPILHHLTLKH-RCITLDT--YGSARSPYTGQAITISTIASDVIA  83
             ++ +HGL  S + +  +   L     R I LD   +G +  P          +A D+  
Sbjct  2    PVLLLHGLPGSSDLWRKLAPALARDGFRVIALDLRGFGKSSRPKAQDDYRTDDLAEDLEY  61

Query  84   VLDALHIPKAVVVGHSMGGLVVTLLGAQYSDRITTVVAVGPTHPSESLASTMRQR  138
            +L+AL + K  +VGHSMGGL+     A+Y DR+  +V +G   P   L    R  
Sbjct  62   ILEALGLEKVNLVGHSMGGLIALAYAAKYPDRVKALVLLGALDPPHELDEADRFI  116



Lambda      K        H        a         alpha
   0.320    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00017180

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460930 pfam03463, eRF1_1, eRF1 domain 1. The release factor e...  168     3e-52
CDD:397503 pfam03465, eRF1_3, eRF1 domain 3. The release factor e...  108     1e-29
CDD:397502 pfam03464, eRF1_2, eRF1 domain 2. The release factor e...  69.2    6e-15


>CDD:460930 pfam03463, eRF1_1, eRF1 domain 1.  The release factor eRF1 terminates 
protein biosynthesis by recognising stop codons at 
the A site of the ribosome and stimulating peptidyl-tRNA bond 
hydrolysis at the peptidyl transferase centre. The crystal 
structure of human eRF1 is known. The overall shape and dimensions 
of eRF1 resemble a tRNA molecule with domains 1, 2, 
and 3 of eRF1 corresponding to the anticodon loop, aminoacyl 
acceptor stem, and T stem of a tRNA molecule, respectively. 
The position of the essential GGQ motif at an exposed tip of 
domain 2 suggests that the Gln residue coordinates a water 
molecule to mediate the hydrolytic activity at the peptidyl 
transferase centre. A conserved groove on domain 1, 80 A from 
the GGQ motif, is proposed to form the codon recognition 
site. This family also includes other proteins for which the 
precise molecular function is unknown. Many of them are from 
Archaebacteria. These proteins may also be involved in translation 
termination but this awaits experimental verification.
Length=122

 Score = 168 bits (429),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 59/136 (43%), Positives = 80/136 (59%), Gaps = 14/136 (10%)

Query  1    MRLIKNKIEHGGSGTVTLCPEEPEDMWHAYNLIRPGDLLRASAIRRVTTTHDTGTTTSSR  60
            M+L+K  IE  G+G +TL PE  +D+WH YNLIRPGD + A+  R+VT         S R
Sbjct  1    MKLLKEDIEGDGTGLITLYPEPDDDLWHLYNLIRPGDGVAANTKRKVTRES------SER  54

Query  61   VHLTLEIRVKSLDFDPQSSQLHVGGTIVNETPHTKVGQHHTLDLELNRNFTLEKEIGANG  120
            V L L I V+ L FD ++  L V GTIV E  H K+G++HTLD+E  R  T+ K      
Sbjct  55   VLLALTIIVERLKFDKKNGLLRVKGTIVEENEHVKLGKYHTLDIEPPRPITIIKY-----  109

Query  121  EGVGWDSIAVQMLQDA  136
                WD  A++ L++A
Sbjct  110  ---RWDKFALERLKEA  122


>CDD:397503 pfam03465, eRF1_3, eRF1 domain 3.  The release factor eRF1 terminates 
protein biosynthesis by recognising stop codons at 
the A site of the ribosome and stimulating peptidyl-tRNA bond 
hydrolysis at the peptidyl transferase centre. The crystal 
structure of human eRF1 is known. The overall shape and dimensions 
of eRF1 resemble a tRNA molecule with domains 1, 2, 
and 3 of eRF1 corresponding to the anticodon loop, aminoacyl 
acceptor stem, and T stem of a tRNA molecule, respectively. 
The position of the essential GGQ motif at an exposed tip of 
domain 2 suggests that the Gln residue coordinates a water 
molecule to mediate the hydrolytic activity at the peptidyl 
transferase centre. A conserved groove on domain 1, 80 A from 
the GGQ motif, is proposed to form the codon recognition 
site. This family also includes other proteins for which the 
precise molecular function is unknown. Many of them are from 
Archaebacteria. These proteins may also be involved in translation 
termination but this awaits experimental verification.
Length=100

 Score = 108 bits (273),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 43/105 (41%), Positives = 65/105 (62%), Gaps = 5/105 (5%)

Query  291  YARETKLMDDFLGHLRKETNKAIYGPREVEAAVDQGAVGRGGGVLIISNRLFRSQDVAER  350
             A+E KL+++FL  L K+T  A+YG  EV  A++ GAV      L+IS+ L RS+DVA R
Sbjct  1    IAQEKKLLEEFLEELAKDTGLAVYGVEEVLKALEMGAV----ETLLISDELLRSRDVATR  56

Query  351  KRWVSLVDRVRDVEGGEVRVLSSDHESGRRLDGLGGVAALCTFPV  395
             +   LV+   +  GG+V ++S + E G +L G GG+AA+  + V
Sbjct  57   NKIEWLVENAEES-GGKVEIVSDESEEGEQLKGFGGIAAILRYKV  100


>CDD:397502 pfam03464, eRF1_2, eRF1 domain 2.  The release factor eRF1 terminates 
protein biosynthesis by recognising stop codons at 
the A site of the ribosome and stimulating peptidyl-tRNA bond 
hydrolysis at the peptidyl transferase centre. The crystal 
structure of human eRF1 is known. The overall shape and dimensions 
of eRF1 resemble a tRNA molecule with domains 1, 2, 
and 3 of eRF1 corresponding to the anticodon loop, aminoacyl 
acceptor stem, and T stem of a tRNA molecule, respectively. 
The position of the essential GGQ motif at an exposed tip of 
domain 2 suggests that the Gln residue coordinates a water 
molecule to mediate the hydrolytic activity at the peptidyl 
transferase centre. A conserved groove on domain 1, 80 A from 
the GGQ motif, is proposed to form the codon recognition 
site. This family also includes other proteins for which the 
precise molecular function is unknown. Many of them are from 
Archaebacteria. These proteins may also be involved in translation 
termination but this awaits experimental verification.
Length=133

 Score = 69.2 bits (170),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 55/147 (37%), Gaps = 24/147 (16%)

Query  149  AVVMQEGLAHICFIGQFQTVLKQKVEMSVPRKR------QGGGGGDHDKGMSKFYQVTLD  202
            A+VM EG A I  +   +T +  K+E+S+P K               D+    FY+    
Sbjct  4    AIVMDEGEATIGLLTGSRTEVLAKIEVSIPGKHGRGGQSARRFARLRDEARHNFYK----  59

Query  203  TLLRQMEFNTSATSLTSNEPVKPVLLASPGFVAAGFQKYIQSVASTTTPALKRLLPS-IV  261
               +  E    A      + VK ++LA PGF    F       A         L    I 
Sbjct  60   ---KVGEAANQAFIHVDKDVVKGIILAGPGFTKEEFYDGDYLDA--------ELKDKVIK  108

Query  262  VVHSASGYLHSLAEVLQSPAVKTILAD  288
            +V  + G  H L E L+      +L+D
Sbjct  109  LVDVSYGGEHGLNEALE--KAADVLSD  133



Lambda      K        H        a         alpha
   0.316    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00010520

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397503 pfam03465, eRF1_3, eRF1 domain 3. The release factor e...  107     3e-30
CDD:397502 pfam03464, eRF1_2, eRF1 domain 2. The release factor e...  68.5    5e-15


>CDD:397503 pfam03465, eRF1_3, eRF1 domain 3.  The release factor eRF1 terminates 
protein biosynthesis by recognising stop codons at 
the A site of the ribosome and stimulating peptidyl-tRNA bond 
hydrolysis at the peptidyl transferase centre. The crystal 
structure of human eRF1 is known. The overall shape and dimensions 
of eRF1 resemble a tRNA molecule with domains 1, 2, 
and 3 of eRF1 corresponding to the anticodon loop, aminoacyl 
acceptor stem, and T stem of a tRNA molecule, respectively. 
The position of the essential GGQ motif at an exposed tip of 
domain 2 suggests that the Gln residue coordinates a water 
molecule to mediate the hydrolytic activity at the peptidyl 
transferase centre. A conserved groove on domain 1, 80 A from 
the GGQ motif, is proposed to form the codon recognition 
site. This family also includes other proteins for which the 
precise molecular function is unknown. Many of them are from 
Archaebacteria. These proteins may also be involved in translation 
termination but this awaits experimental verification.
Length=100

 Score = 107 bits (270),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 43/105 (41%), Positives = 65/105 (62%), Gaps = 5/105 (5%)

Query  160  YARETKLMDDFLGHLRKETNKAIYGPREVEAAVDQGAVGRGGGVLIISNRLFRSQDVAER  219
             A+E KL+++FL  L K+T  A+YG  EV  A++ GAV      L+IS+ L RS+DVA R
Sbjct  1    IAQEKKLLEEFLEELAKDTGLAVYGVEEVLKALEMGAV----ETLLISDELLRSRDVATR  56

Query  220  KRWVSLVDRVRDVEGGEVRVLSSDHESGRRLDGLGGVAALCTFPV  264
             +   LV+   +  GG+V ++S + E G +L G GG+AA+  + V
Sbjct  57   NKIEWLVENAEES-GGKVEIVSDESEEGEQLKGFGGIAAILRYKV  100


>CDD:397502 pfam03464, eRF1_2, eRF1 domain 2.  The release factor eRF1 terminates 
protein biosynthesis by recognising stop codons at 
the A site of the ribosome and stimulating peptidyl-tRNA bond 
hydrolysis at the peptidyl transferase centre. The crystal 
structure of human eRF1 is known. The overall shape and dimensions 
of eRF1 resemble a tRNA molecule with domains 1, 2, 
and 3 of eRF1 corresponding to the anticodon loop, aminoacyl 
acceptor stem, and T stem of a tRNA molecule, respectively. 
The position of the essential GGQ motif at an exposed tip of 
domain 2 suggests that the Gln residue coordinates a water 
molecule to mediate the hydrolytic activity at the peptidyl 
transferase centre. A conserved groove on domain 1, 80 A from 
the GGQ motif, is proposed to form the codon recognition 
site. This family also includes other proteins for which the 
precise molecular function is unknown. Many of them are from 
Archaebacteria. These proteins may also be involved in translation 
termination but this awaits experimental verification.
Length=133

 Score = 68.5 bits (168),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 55/147 (37%), Gaps = 24/147 (16%)

Query  18   AVVMQEGLAHICFIGQFQTVLKQKVEMSVPRKR------QGGGGGDHDKGMSKFYQVTLD  71
            A+VM EG A I  +   +T +  K+E+S+P K               D+    FY+    
Sbjct  4    AIVMDEGEATIGLLTGSRTEVLAKIEVSIPGKHGRGGQSARRFARLRDEARHNFYK----  59

Query  72   TLLRQMEFNTSATSLTSNEPVKPVLLASPGFVAAGFQKYIQSVASTTTPALKRLLPS-IV  130
               +  E    A      + VK ++LA PGF    F       A         L    I 
Sbjct  60   ---KVGEAANQAFIHVDKDVVKGIILAGPGFTKEEFYDGDYLDA--------ELKDKVIK  108

Query  131  VVHSASGYLHSLAEVLQSPAVKTILAD  157
            +V  + G  H L E L+      +L+D
Sbjct  109  LVDVSYGGEHGLNEALE--KAADVLSD  133



Lambda      K        H        a         alpha
   0.316    0.133    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00017181

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460930 pfam03463, eRF1_1, eRF1 domain 1. The release factor e...  168     3e-52
CDD:397503 pfam03465, eRF1_3, eRF1 domain 3. The release factor e...  108     1e-29
CDD:397502 pfam03464, eRF1_2, eRF1 domain 2. The release factor e...  69.2    6e-15


>CDD:460930 pfam03463, eRF1_1, eRF1 domain 1.  The release factor eRF1 terminates 
protein biosynthesis by recognising stop codons at 
the A site of the ribosome and stimulating peptidyl-tRNA bond 
hydrolysis at the peptidyl transferase centre. The crystal 
structure of human eRF1 is known. The overall shape and dimensions 
of eRF1 resemble a tRNA molecule with domains 1, 2, 
and 3 of eRF1 corresponding to the anticodon loop, aminoacyl 
acceptor stem, and T stem of a tRNA molecule, respectively. 
The position of the essential GGQ motif at an exposed tip of 
domain 2 suggests that the Gln residue coordinates a water 
molecule to mediate the hydrolytic activity at the peptidyl 
transferase centre. A conserved groove on domain 1, 80 A from 
the GGQ motif, is proposed to form the codon recognition 
site. This family also includes other proteins for which the 
precise molecular function is unknown. Many of them are from 
Archaebacteria. These proteins may also be involved in translation 
termination but this awaits experimental verification.
Length=122

 Score = 168 bits (429),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 59/136 (43%), Positives = 80/136 (59%), Gaps = 14/136 (10%)

Query  1    MRLIKNKIEHGGSGTVTLCPEEPEDMWHAYNLIRPGDLLRASAIRRVTTTHDTGTTTSSR  60
            M+L+K  IE  G+G +TL PE  +D+WH YNLIRPGD + A+  R+VT         S R
Sbjct  1    MKLLKEDIEGDGTGLITLYPEPDDDLWHLYNLIRPGDGVAANTKRKVTRES------SER  54

Query  61   VHLTLEIRVKSLDFDPQSSQLHVGGTIVNETPHTKVGQHHTLDLELNRNFTLEKEIGANG  120
            V L L I V+ L FD ++  L V GTIV E  H K+G++HTLD+E  R  T+ K      
Sbjct  55   VLLALTIIVERLKFDKKNGLLRVKGTIVEENEHVKLGKYHTLDIEPPRPITIIKY-----  109

Query  121  EGVGWDSIAVQMLQDA  136
                WD  A++ L++A
Sbjct  110  ---RWDKFALERLKEA  122


>CDD:397503 pfam03465, eRF1_3, eRF1 domain 3.  The release factor eRF1 terminates 
protein biosynthesis by recognising stop codons at 
the A site of the ribosome and stimulating peptidyl-tRNA bond 
hydrolysis at the peptidyl transferase centre. The crystal 
structure of human eRF1 is known. The overall shape and dimensions 
of eRF1 resemble a tRNA molecule with domains 1, 2, 
and 3 of eRF1 corresponding to the anticodon loop, aminoacyl 
acceptor stem, and T stem of a tRNA molecule, respectively. 
The position of the essential GGQ motif at an exposed tip of 
domain 2 suggests that the Gln residue coordinates a water 
molecule to mediate the hydrolytic activity at the peptidyl 
transferase centre. A conserved groove on domain 1, 80 A from 
the GGQ motif, is proposed to form the codon recognition 
site. This family also includes other proteins for which the 
precise molecular function is unknown. Many of them are from 
Archaebacteria. These proteins may also be involved in translation 
termination but this awaits experimental verification.
Length=100

 Score = 108 bits (273),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 43/105 (41%), Positives = 65/105 (62%), Gaps = 5/105 (5%)

Query  291  YARETKLMDDFLGHLRKETNKAIYGPREVEAAVDQGAVGRGGGVLIISNRLFRSQDVAER  350
             A+E KL+++FL  L K+T  A+YG  EV  A++ GAV      L+IS+ L RS+DVA R
Sbjct  1    IAQEKKLLEEFLEELAKDTGLAVYGVEEVLKALEMGAV----ETLLISDELLRSRDVATR  56

Query  351  KRWVSLVDRVRDVEGGEVRVLSSDHESGRRLDGLGGVAALCTFPV  395
             +   LV+   +  GG+V ++S + E G +L G GG+AA+  + V
Sbjct  57   NKIEWLVENAEES-GGKVEIVSDESEEGEQLKGFGGIAAILRYKV  100


>CDD:397502 pfam03464, eRF1_2, eRF1 domain 2.  The release factor eRF1 terminates 
protein biosynthesis by recognising stop codons at 
the A site of the ribosome and stimulating peptidyl-tRNA bond 
hydrolysis at the peptidyl transferase centre. The crystal 
structure of human eRF1 is known. The overall shape and dimensions 
of eRF1 resemble a tRNA molecule with domains 1, 2, 
and 3 of eRF1 corresponding to the anticodon loop, aminoacyl 
acceptor stem, and T stem of a tRNA molecule, respectively. 
The position of the essential GGQ motif at an exposed tip of 
domain 2 suggests that the Gln residue coordinates a water 
molecule to mediate the hydrolytic activity at the peptidyl 
transferase centre. A conserved groove on domain 1, 80 A from 
the GGQ motif, is proposed to form the codon recognition 
site. This family also includes other proteins for which the 
precise molecular function is unknown. Many of them are from 
Archaebacteria. These proteins may also be involved in translation 
termination but this awaits experimental verification.
Length=133

 Score = 69.2 bits (170),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 55/147 (37%), Gaps = 24/147 (16%)

Query  149  AVVMQEGLAHICFIGQFQTVLKQKVEMSVPRKR------QGGGGGDHDKGMSKFYQVTLD  202
            A+VM EG A I  +   +T +  K+E+S+P K               D+    FY+    
Sbjct  4    AIVMDEGEATIGLLTGSRTEVLAKIEVSIPGKHGRGGQSARRFARLRDEARHNFYK----  59

Query  203  TLLRQMEFNTSATSLTSNEPVKPVLLASPGFVAAGFQKYIQSVASTTTPALKRLLPS-IV  261
               +  E    A      + VK ++LA PGF    F       A         L    I 
Sbjct  60   ---KVGEAANQAFIHVDKDVVKGIILAGPGFTKEEFYDGDYLDA--------ELKDKVIK  108

Query  262  VVHSASGYLHSLAEVLQSPAVKTILAD  288
            +V  + G  H L E L+      +L+D
Sbjct  109  LVDVSYGGEHGLNEALE--KAADVLSD  133



Lambda      K        H        a         alpha
   0.316    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00010521

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460930 pfam03463, eRF1_1, eRF1 domain 1. The release factor e...  169     1e-52
CDD:397503 pfam03465, eRF1_3, eRF1 domain 3. The release factor e...  109     8e-30
CDD:397502 pfam03464, eRF1_2, eRF1 domain 2. The release factor e...  67.3    3e-14


>CDD:460930 pfam03463, eRF1_1, eRF1 domain 1.  The release factor eRF1 terminates 
protein biosynthesis by recognising stop codons at 
the A site of the ribosome and stimulating peptidyl-tRNA bond 
hydrolysis at the peptidyl transferase centre. The crystal 
structure of human eRF1 is known. The overall shape and dimensions 
of eRF1 resemble a tRNA molecule with domains 1, 2, 
and 3 of eRF1 corresponding to the anticodon loop, aminoacyl 
acceptor stem, and T stem of a tRNA molecule, respectively. 
The position of the essential GGQ motif at an exposed tip of 
domain 2 suggests that the Gln residue coordinates a water 
molecule to mediate the hydrolytic activity at the peptidyl 
transferase centre. A conserved groove on domain 1, 80 A from 
the GGQ motif, is proposed to form the codon recognition 
site. This family also includes other proteins for which the 
precise molecular function is unknown. Many of them are from 
Archaebacteria. These proteins may also be involved in translation 
termination but this awaits experimental verification.
Length=122

 Score = 169 bits (432),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 59/136 (43%), Positives = 80/136 (59%), Gaps = 14/136 (10%)

Query  1    MRLIKNKIEHGGSGTVTLCPEEPEDMWHAYNLIRPGDLLRASAIRRVTTTHDTGTTTSSR  60
            M+L+K  IE  G+G +TL PE  +D+WH YNLIRPGD + A+  R+VT         S R
Sbjct  1    MKLLKEDIEGDGTGLITLYPEPDDDLWHLYNLIRPGDGVAANTKRKVTRES------SER  54

Query  61   VHLTLEIRVKSLDFDPQSSQLHVGGTIVNETPHTKVGQHHTLDLELNRNFTLEKEIGANG  120
            V L L I V+ L FD ++  L V GTIV E  H K+G++HTLD+E  R  T+ K      
Sbjct  55   VLLALTIIVERLKFDKKNGLLRVKGTIVEENEHVKLGKYHTLDIEPPRPITIIKY-----  109

Query  121  EGVGWDSIAVQMLQDA  136
                WD  A++ L++A
Sbjct  110  ---RWDKFALERLKEA  122


>CDD:397503 pfam03465, eRF1_3, eRF1 domain 3.  The release factor eRF1 terminates 
protein biosynthesis by recognising stop codons at 
the A site of the ribosome and stimulating peptidyl-tRNA bond 
hydrolysis at the peptidyl transferase centre. The crystal 
structure of human eRF1 is known. The overall shape and dimensions 
of eRF1 resemble a tRNA molecule with domains 1, 2, 
and 3 of eRF1 corresponding to the anticodon loop, aminoacyl 
acceptor stem, and T stem of a tRNA molecule, respectively. 
The position of the essential GGQ motif at an exposed tip of 
domain 2 suggests that the Gln residue coordinates a water 
molecule to mediate the hydrolytic activity at the peptidyl 
transferase centre. A conserved groove on domain 1, 80 A from 
the GGQ motif, is proposed to form the codon recognition 
site. This family also includes other proteins for which the 
precise molecular function is unknown. Many of them are from 
Archaebacteria. These proteins may also be involved in translation 
termination but this awaits experimental verification.
Length=100

 Score = 109 bits (274),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 43/105 (41%), Positives = 65/105 (62%), Gaps = 5/105 (5%)

Query  291  YARETKLMDDFLGHLRKETNKAIYGPREVEAAVDQGAVGRGGGVLIISNRLFRSQDVAER  350
             A+E KL+++FL  L K+T  A+YG  EV  A++ GAV      L+IS+ L RS+DVA R
Sbjct  1    IAQEKKLLEEFLEELAKDTGLAVYGVEEVLKALEMGAV----ETLLISDELLRSRDVATR  56

Query  351  KRWVSLVDRVRDVEGGEVRVLSSDHESGRRLDGLGGVAALCTFPV  395
             +   LV+   +  GG+V ++S + E G +L G GG+AA+  + V
Sbjct  57   NKIEWLVENAEES-GGKVEIVSDESEEGEQLKGFGGIAAILRYKV  100


>CDD:397502 pfam03464, eRF1_2, eRF1 domain 2.  The release factor eRF1 terminates 
protein biosynthesis by recognising stop codons at 
the A site of the ribosome and stimulating peptidyl-tRNA bond 
hydrolysis at the peptidyl transferase centre. The crystal 
structure of human eRF1 is known. The overall shape and dimensions 
of eRF1 resemble a tRNA molecule with domains 1, 2, 
and 3 of eRF1 corresponding to the anticodon loop, aminoacyl 
acceptor stem, and T stem of a tRNA molecule, respectively. 
The position of the essential GGQ motif at an exposed tip of 
domain 2 suggests that the Gln residue coordinates a water 
molecule to mediate the hydrolytic activity at the peptidyl 
transferase centre. A conserved groove on domain 1, 80 A from 
the GGQ motif, is proposed to form the codon recognition 
site. This family also includes other proteins for which the 
precise molecular function is unknown. Many of them are from 
Archaebacteria. These proteins may also be involved in translation 
termination but this awaits experimental verification.
Length=133

 Score = 67.3 bits (165),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 34/142 (24%), Positives = 56/142 (39%), Gaps = 14/142 (10%)

Query  149  AVVMQEGLAHICFIGQFQTVLKQKVEMSVPRKRQGGGGGDHDKVLHPSANPLLDTLLRQM  208
            A+VM EG A I  +   +T +  K+E+S+P K   GG            +       +++
Sbjct  4    AIVMDEGEATIGLLTGSRTEVLAKIEVSIPGKHGRGGQSARR--FARLRDEARHNFYKKV  61

Query  209  EFNTSATSLTSNEP-VKPVLLASPGFVAAGFQKYIQSVASTTTPALKRLLPS-IVVVHSA  266
                +   +  ++  VK ++LA PGF    F       A         L    I +V  +
Sbjct  62   GEAANQAFIHVDKDVVKGIILAGPGFTKEEFYDGDYLDA--------ELKDKVIKLVDVS  113

Query  267  SGYLHSLAEVLQSPAVKTILAD  288
             G  H L E L+      +L+D
Sbjct  114  YGGEHGLNEALE--KAADVLSD  133



Lambda      K        H        a         alpha
   0.316    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00017183

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460930 pfam03463, eRF1_1, eRF1 domain 1. The release factor e...  168     3e-52
CDD:397503 pfam03465, eRF1_3, eRF1 domain 3. The release factor e...  108     1e-29
CDD:397502 pfam03464, eRF1_2, eRF1 domain 2. The release factor e...  69.2    6e-15


>CDD:460930 pfam03463, eRF1_1, eRF1 domain 1.  The release factor eRF1 terminates 
protein biosynthesis by recognising stop codons at 
the A site of the ribosome and stimulating peptidyl-tRNA bond 
hydrolysis at the peptidyl transferase centre. The crystal 
structure of human eRF1 is known. The overall shape and dimensions 
of eRF1 resemble a tRNA molecule with domains 1, 2, 
and 3 of eRF1 corresponding to the anticodon loop, aminoacyl 
acceptor stem, and T stem of a tRNA molecule, respectively. 
The position of the essential GGQ motif at an exposed tip of 
domain 2 suggests that the Gln residue coordinates a water 
molecule to mediate the hydrolytic activity at the peptidyl 
transferase centre. A conserved groove on domain 1, 80 A from 
the GGQ motif, is proposed to form the codon recognition 
site. This family also includes other proteins for which the 
precise molecular function is unknown. Many of them are from 
Archaebacteria. These proteins may also be involved in translation 
termination but this awaits experimental verification.
Length=122

 Score = 168 bits (429),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 59/136 (43%), Positives = 80/136 (59%), Gaps = 14/136 (10%)

Query  1    MRLIKNKIEHGGSGTVTLCPEEPEDMWHAYNLIRPGDLLRASAIRRVTTTHDTGTTTSSR  60
            M+L+K  IE  G+G +TL PE  +D+WH YNLIRPGD + A+  R+VT         S R
Sbjct  1    MKLLKEDIEGDGTGLITLYPEPDDDLWHLYNLIRPGDGVAANTKRKVTRES------SER  54

Query  61   VHLTLEIRVKSLDFDPQSSQLHVGGTIVNETPHTKVGQHHTLDLELNRNFTLEKEIGANG  120
            V L L I V+ L FD ++  L V GTIV E  H K+G++HTLD+E  R  T+ K      
Sbjct  55   VLLALTIIVERLKFDKKNGLLRVKGTIVEENEHVKLGKYHTLDIEPPRPITIIKY-----  109

Query  121  EGVGWDSIAVQMLQDA  136
                WD  A++ L++A
Sbjct  110  ---RWDKFALERLKEA  122


>CDD:397503 pfam03465, eRF1_3, eRF1 domain 3.  The release factor eRF1 terminates 
protein biosynthesis by recognising stop codons at 
the A site of the ribosome and stimulating peptidyl-tRNA bond 
hydrolysis at the peptidyl transferase centre. The crystal 
structure of human eRF1 is known. The overall shape and dimensions 
of eRF1 resemble a tRNA molecule with domains 1, 2, 
and 3 of eRF1 corresponding to the anticodon loop, aminoacyl 
acceptor stem, and T stem of a tRNA molecule, respectively. 
The position of the essential GGQ motif at an exposed tip of 
domain 2 suggests that the Gln residue coordinates a water 
molecule to mediate the hydrolytic activity at the peptidyl 
transferase centre. A conserved groove on domain 1, 80 A from 
the GGQ motif, is proposed to form the codon recognition 
site. This family also includes other proteins for which the 
precise molecular function is unknown. Many of them are from 
Archaebacteria. These proteins may also be involved in translation 
termination but this awaits experimental verification.
Length=100

 Score = 108 bits (273),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 43/105 (41%), Positives = 65/105 (62%), Gaps = 5/105 (5%)

Query  291  YARETKLMDDFLGHLRKETNKAIYGPREVEAAVDQGAVGRGGGVLIISNRLFRSQDVAER  350
             A+E KL+++FL  L K+T  A+YG  EV  A++ GAV      L+IS+ L RS+DVA R
Sbjct  1    IAQEKKLLEEFLEELAKDTGLAVYGVEEVLKALEMGAV----ETLLISDELLRSRDVATR  56

Query  351  KRWVSLVDRVRDVEGGEVRVLSSDHESGRRLDGLGGVAALCTFPV  395
             +   LV+   +  GG+V ++S + E G +L G GG+AA+  + V
Sbjct  57   NKIEWLVENAEES-GGKVEIVSDESEEGEQLKGFGGIAAILRYKV  100


>CDD:397502 pfam03464, eRF1_2, eRF1 domain 2.  The release factor eRF1 terminates 
protein biosynthesis by recognising stop codons at 
the A site of the ribosome and stimulating peptidyl-tRNA bond 
hydrolysis at the peptidyl transferase centre. The crystal 
structure of human eRF1 is known. The overall shape and dimensions 
of eRF1 resemble a tRNA molecule with domains 1, 2, 
and 3 of eRF1 corresponding to the anticodon loop, aminoacyl 
acceptor stem, and T stem of a tRNA molecule, respectively. 
The position of the essential GGQ motif at an exposed tip of 
domain 2 suggests that the Gln residue coordinates a water 
molecule to mediate the hydrolytic activity at the peptidyl 
transferase centre. A conserved groove on domain 1, 80 A from 
the GGQ motif, is proposed to form the codon recognition 
site. This family also includes other proteins for which the 
precise molecular function is unknown. Many of them are from 
Archaebacteria. These proteins may also be involved in translation 
termination but this awaits experimental verification.
Length=133

 Score = 69.2 bits (170),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 55/147 (37%), Gaps = 24/147 (16%)

Query  149  AVVMQEGLAHICFIGQFQTVLKQKVEMSVPRKR------QGGGGGDHDKGMSKFYQVTLD  202
            A+VM EG A I  +   +T +  K+E+S+P K               D+    FY+    
Sbjct  4    AIVMDEGEATIGLLTGSRTEVLAKIEVSIPGKHGRGGQSARRFARLRDEARHNFYK----  59

Query  203  TLLRQMEFNTSATSLTSNEPVKPVLLASPGFVAAGFQKYIQSVASTTTPALKRLLPS-IV  261
               +  E    A      + VK ++LA PGF    F       A         L    I 
Sbjct  60   ---KVGEAANQAFIHVDKDVVKGIILAGPGFTKEEFYDGDYLDA--------ELKDKVIK  108

Query  262  VVHSASGYLHSLAEVLQSPAVKTILAD  288
            +V  + G  H L E L+      +L+D
Sbjct  109  LVDVSYGGEHGLNEALE--KAADVLSD  133



Lambda      K        H        a         alpha
   0.316    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00010522

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00017184

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00010524

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459945 pfam00810, ER_lumen_recept, ER lumen protein retaining...  106     6e-30


>CDD:459945 pfam00810, ER_lumen_recept, ER lumen protein retaining receptor. 
 
Length=143

 Score = 106 bits (267),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 28/54 (52%), Positives = 39/54 (72%), Gaps = 0/54 (0%)

Query  14   MQTMWSFSIILESVCVLPQLLLLRQTTVPTVIDSYYLLALGSYRAFYILNWFVR  67
            ++ +W+FSI LESV +LPQL +L++T     + S+Y+ ALG YRA YILNW  R
Sbjct  90   LEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYILNWIYR  143



Lambda      K        H        a         alpha
   0.317    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00010525

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459945 pfam00810, ER_lumen_recept, ER lumen protein retaining...  106     7e-30


>CDD:459945 pfam00810, ER_lumen_recept, ER lumen protein retaining receptor. 
 
Length=143

 Score = 106 bits (266),  Expect = 7e-30, Method: Composition-based stats.
 Identities = 28/54 (52%), Positives = 39/54 (72%), Gaps = 0/54 (0%)

Query  1    MQTMWSFSIILESVCVLPQLLLLRQTTVPTVIDSYYLLALGSYRAFYILNWFVR  54
            ++ +W+FSI LESV +LPQL +L++T     + S+Y+ ALG YRA YILNW  R
Sbjct  90   LEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYILNWIYR  143



Lambda      K        H        a         alpha
   0.319    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00017185

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00017186

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00010527

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00010528

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00010526

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00010529

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00010532

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.120    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00010531

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.120    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00010530

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.120    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00017188

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  77.0    1e-15


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 77.0 bits (190),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 154/451 (34%), Gaps = 56/451 (12%)

Query  82   KKLTWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWM  141
            ++ TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +
Sbjct  5    EERTWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALL  62

Query  142  ATRGPLSGIRTMAFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILSAVSPNG---  198
               G   G+      R + G   S +  +L  +   G+  I   +G + L  +       
Sbjct  63   GRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGH  122

Query  199  ------NLSVAVGIVIIALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSST  248
                       +  ++   I W+V       G+ A   +   A     ++    FG    
Sbjct  123  WLWIGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIW  179

Query  249  KYDLST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSL  304
                +    + D     G    F S    C +   T    A DF  Y P   S   I  +
Sbjct  180  AAVKAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLV  239

Query  305  SLSGLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVA  364
            ++ G    F L  + G   A        +           I+  F P  G     +++VA
Sbjct  240  AVPGGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVA  291

Query  365  LGLIA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTN  422
            L  +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT 
Sbjct  292  LAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTT  349

Query  423  FLALMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAA  468
            FL+L+  +++    +I+                  R R    WY    N          A
Sbjct  350  FLSLLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRA  401

Query  469  FIAFLVGWAGAVLCMAQLWYIGPLAKLVGEY  499
            F A++VG A  +   +    I      +  +
Sbjct  402  FAAYIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.325    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00017187

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  77.0    1e-15


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 77.0 bits (190),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 154/451 (34%), Gaps = 56/451 (12%)

Query  82   KKLTWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWM  141
            ++ TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +
Sbjct  5    EERTWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALL  62

Query  142  ATRGPLSGIRTMAFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILSAVSPNG---  198
               G   G+      R + G   S +  +L  +   G+  I   +G + L  +       
Sbjct  63   GRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGH  122

Query  199  ------NLSVAVGIVIIALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSST  248
                       +  ++   I W+V       G+ A   +   A     ++    FG    
Sbjct  123  WLWIGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIW  179

Query  249  KYDLST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSL  304
                +    + D     G    F S    C +   T    A DF  Y P   S   I  +
Sbjct  180  AAVKAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLV  239

Query  305  SLSGLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVA  364
            ++ G    F L  + G   A        +           I+  F P  G     +++VA
Sbjct  240  AVPGGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVA  291

Query  365  LGLIA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTN  422
            L  +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT 
Sbjct  292  LAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTT  349

Query  423  FLALMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAA  468
            FL+L+  +++    +I+                  R R    WY    N          A
Sbjct  350  FLSLLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRA  401

Query  469  FIAFLVGWAGAVLCMAQLWYIGPLAKLVGEY  499
            F A++VG A  +   +    I      +  +
Sbjct  402  FAAYIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.325    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0691    0.140     1.90     42.6     43.6 

Effective search space used: 663160908


Query= TCONS_00010534

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  77.0    1e-15


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 77.0 bits (190),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 154/451 (34%), Gaps = 56/451 (12%)

Query  82   KKLTWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWM  141
            ++ TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +
Sbjct  5    EERTWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALL  62

Query  142  ATRGPLSGIRTMAFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILSAVSPNG---  198
               G   G+      R + G   S +  +L  +   G+  I   +G + L  +       
Sbjct  63   GRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGH  122

Query  199  ------NLSVAVGIVIIALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSST  248
                       +  ++   I W+V       G+ A   +   A     ++    FG    
Sbjct  123  WLWIGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIW  179

Query  249  KYDLST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSL  304
                +    + D     G    F S    C +   T    A DF  Y P   S   I  +
Sbjct  180  AAVKAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLV  239

Query  305  SLSGLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVA  364
            ++ G    F L  + G   A        +           I+  F P  G     +++VA
Sbjct  240  AVPGGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVA  291

Query  365  LGLIA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTN  422
            L  +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT 
Sbjct  292  LAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTT  349

Query  423  FLALMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAA  468
            FL+L+  +++    +I+                  R R    WY    N          A
Sbjct  350  FLSLLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRA  401

Query  469  FIAFLVGWAGAVLCMAQLWYIGPLAKLVGEY  499
            F A++VG A  +   +    I      +  +
Sbjct  402  FAAYIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.325    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 663160908


Query= TCONS_00010539

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00010536

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00010538

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00010537

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00010535

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00010541

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  77.0    1e-15


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 77.0 bits (190),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 154/451 (34%), Gaps = 56/451 (12%)

Query  82   KKLTWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWM  141
            ++ TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +
Sbjct  5    EERTWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALL  62

Query  142  ATRGPLSGIRTMAFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILSAVSPNG---  198
               G   G+      R + G   S +  +L  +   G+  I   +G + L  +       
Sbjct  63   GRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGH  122

Query  199  ------NLSVAVGIVIIALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSST  248
                       +  ++   I W+V       G+ A   +   A     ++    FG    
Sbjct  123  WLWIGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIW  179

Query  249  KYDLST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSL  304
                +    + D     G    F S    C +   T    A DF  Y P   S   I  +
Sbjct  180  AAVKAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLV  239

Query  305  SLSGLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVA  364
            ++ G    F L  + G   A        +           I+  F P  G     +++VA
Sbjct  240  AVPGGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVA  291

Query  365  LGLIA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTN  422
            L  +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT 
Sbjct  292  LAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTT  349

Query  423  FLALMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAA  468
            FL+L+  +++    +I+                  R R    WY    N          A
Sbjct  350  FLSLLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRA  401

Query  469  FIAFLVGWAGAVLCMAQLWYIGPLAKLVGEY  499
            F A++VG A  +   +    I      +  +
Sbjct  402  FAAYIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.325    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00010542

Length=382


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00010540

Length=377


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 447362496


Query= TCONS_00017190

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00017189

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  77.0    1e-15


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 77.0 bits (190),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 154/451 (34%), Gaps = 56/451 (12%)

Query  82   KKLTWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWM  141
            ++ TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +
Sbjct  5    EERTWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALL  62

Query  142  ATRGPLSGIRTMAFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILSAVSPNG---  198
               G   G+      R + G   S +  +L  +   G+  I   +G + L  +       
Sbjct  63   GRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGH  122

Query  199  ------NLSVAVGIVIIALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSST  248
                       +  ++   I W+V       G+ A   +   A     ++    FG    
Sbjct  123  WLWIGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIW  179

Query  249  KYDLST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSL  304
                +    + D     G    F S    C +   T    A DF  Y P   S   I  +
Sbjct  180  AAVKAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLV  239

Query  305  SLSGLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVA  364
            ++ G    F L  + G   A        +           I+  F P  G     +++VA
Sbjct  240  AVPGGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVA  291

Query  365  LGLIA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTN  422
            L  +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT 
Sbjct  292  LAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTT  349

Query  423  FLALMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAA  468
            FL+L+  +++    +I+                  R R    WY    N          A
Sbjct  350  FLSLLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRA  401

Query  469  FIAFLVGWAGAVLCMAQLWYIGPLAKLVGEY  499
            F A++VG A  +   +    I      +  +
Sbjct  402  FAAYIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.325    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 663160908


Query= TCONS_00017191

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  77.0    1e-15


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 77.0 bits (190),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 154/451 (34%), Gaps = 56/451 (12%)

Query  82   KKLTWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWM  141
            ++ TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +
Sbjct  5    EERTWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALL  62

Query  142  ATRGPLSGIRTMAFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILSAVSPNG---  198
               G   G+      R + G   S +  +L  +   G+  I   +G + L  +       
Sbjct  63   GRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGH  122

Query  199  ------NLSVAVGIVIIALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSST  248
                       +  ++   I W+V       G+ A   +   A     ++    FG    
Sbjct  123  WLWIGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIW  179

Query  249  KYDLST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSL  304
                +    + D     G    F S    C +   T    A DF  Y P   S   I  +
Sbjct  180  AAVKAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLV  239

Query  305  SLSGLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVA  364
            ++ G    F L  + G   A        +           I+  F P  G     +++VA
Sbjct  240  AVPGGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVA  291

Query  365  LGLIA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTN  422
            L  +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT 
Sbjct  292  LAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTT  349

Query  423  FLALMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAA  468
            FL+L+  +++    +I+                  R R    WY    N          A
Sbjct  350  FLSLLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRA  401

Query  469  FIAFLVGWAGAVLCMAQLWYIGPLAKLVGEY  499
            F A++VG A  +   +    I      +  +
Sbjct  402  FAAYIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.325    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00017192

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  73.2    2e-14


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 73.2 bits (180),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 93/448 (21%), Positives = 152/448 (34%), Gaps = 61/448 (14%)

Query  85   TWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWMATR  144
            TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +   
Sbjct  8    TWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALLGRA  65

Query  145  GPLSGIRTMAFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILS------------  192
            G   G+      R + G   S +  +L  +   G+  I   +G + L             
Sbjct  66   GAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGHWLW  125

Query  193  --AVSPNGNLSVAVALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSSTKYD  246
              A+   G   +    I W+V       G+ A   +   A     ++    FG       
Sbjct  126  IGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIWAAV  182

Query  247  LST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSLSLS  302
             +    + D     G    F S    C +   T    A DF  Y P   S   I  +++ 
Sbjct  183  KAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLVAVP  242

Query  303  GLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVALGL  362
            G    F L  + G   A        +           I+  F P  G     +++VAL  
Sbjct  243  GGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVALAQ  294

Query  363  IA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTNFLA  420
            +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT FL+
Sbjct  295  LGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTTFLS  352

Query  421  LMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAAFIA  466
            L+  +++    +I+                  R R    WY    N          AF A
Sbjct  353  LLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRAFAA  404

Query  467  FLVGWAGAVLCMAQLWYIGPLAKLVGEY  494
            ++VG A  +   +    I      +  +
Sbjct  405  YIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.324    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 634393654


Query= TCONS_00017194

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  73.2    2e-14


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 73.2 bits (180),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 93/448 (21%), Positives = 152/448 (34%), Gaps = 61/448 (14%)

Query  85   TWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWMATR  144
            TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +   
Sbjct  8    TWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALLGRA  65

Query  145  GPLSGIRTMAFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILS------------  192
            G   G+      R + G   S +  +L  +   G+  I   +G + L             
Sbjct  66   GAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGHWLW  125

Query  193  --AVSPNGNLSVAVALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSSTKYD  246
              A+   G   +    I W+V       G+ A   +   A     ++    FG       
Sbjct  126  IGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIWAAV  182

Query  247  LST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSLSLS  302
             +    + D     G    F S    C +   T    A DF  Y P   S   I  +++ 
Sbjct  183  KAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLVAVP  242

Query  303  GLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVALGL  362
            G    F L  + G   A        +           I+  F P  G     +++VAL  
Sbjct  243  GGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVALAQ  294

Query  363  IA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTNFLA  420
            +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT FL+
Sbjct  295  LGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTTFLS  352

Query  421  LMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAAFIA  466
            L+  +++    +I+                  R R    WY    N          AF A
Sbjct  353  LLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRAFAA  404

Query  467  FLVGWAGAVLCMAQLWYIGPLAKLVGEY  494
            ++VG A  +   +    I      +  +
Sbjct  405  YIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.324    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 634393654


Query= TCONS_00017193

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  77.8    7e-16


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 77.8 bits (192),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 155/451 (34%), Gaps = 56/451 (12%)

Query  82   KKLTWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWM  141
            ++ TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +
Sbjct  5    EERTWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALL  62

Query  142  ATRGPLSGIRTMVFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILSAVSPNG---  198
               G   G+   +  R + G   S +  +L  +   G+  I   +G + L  +       
Sbjct  63   GRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGH  122

Query  199  ------NLSVAVGIVIIALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSST  248
                       +  ++   I W+V       G+ A   +   A     ++    FG    
Sbjct  123  WLWIGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIW  179

Query  249  KYDLST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSL  304
                +    + D     G    F S    C +   T    A DF  Y P   S   I  +
Sbjct  180  AAVKAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLV  239

Query  305  SLSGLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVA  364
            ++ G    F L  + G   A        +           I+  F P  G     +++VA
Sbjct  240  AVPGGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVA  291

Query  365  LGLIA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTN  422
            L  +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT 
Sbjct  292  LAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTT  349

Query  423  FLALMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAA  468
            FL+L+  +++    +I+                  R R    WY    N          A
Sbjct  350  FLSLLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRA  401

Query  469  FIAFLVGWAGAVLCMAQLWYIGPLAKLVGEY  499
            F A++VG A  +   +    I      +  +
Sbjct  402  FAAYIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.325    0.140    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00010533

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  77.0    1e-15


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 77.0 bits (190),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 154/451 (34%), Gaps = 56/451 (12%)

Query  82   KKLTWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWM  141
            ++ TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +
Sbjct  5    EERTWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALL  62

Query  142  ATRGPLSGIRTMAFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILSAVSPNG---  198
               G   G+      R + G   S +  +L  +   G+  I   +G + L  +       
Sbjct  63   GRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGH  122

Query  199  ------NLSVAVGIVIIALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSST  248
                       +  ++   I W+V       G+ A   +   A     ++    FG    
Sbjct  123  WLWIGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIW  179

Query  249  KYDLST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSL  304
                +    + D     G    F S    C +   T    A DF  Y P   S   I  +
Sbjct  180  AAVKAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLV  239

Query  305  SLSGLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVA  364
            ++ G    F L  + G   A        +           I+  F P  G     +++VA
Sbjct  240  AVPGGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVA  291

Query  365  LGLIA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTN  422
            L  +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT 
Sbjct  292  LAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTT  349

Query  423  FLALMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAA  468
            FL+L+  +++    +I+                  R R    WY    N          A
Sbjct  350  FLSLLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRA  401

Query  469  FIAFLVGWAGAVLCMAQLWYIGPLAKLVGEY  499
            F A++VG A  +   +    I      +  +
Sbjct  402  FAAYIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.325    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00010544

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.119    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00010545

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00017195

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00017196

Length=220


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00010546

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  75.9    3e-15


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 75.9 bits (187),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 91/448 (20%), Positives = 152/448 (34%), Gaps = 56/448 (13%)

Query  85   TWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWMATR  144
            TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +   
Sbjct  8    TWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALLGRA  65

Query  145  GPLSGIRTMAFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILSAVSPNG------  198
            G   G+      R + G   S +  +L  +   G+  I   +G + L  +          
Sbjct  66   GAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGHWLW  125

Query  199  ---NLSVAVGIVIIALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSSTKYD  251
                    +  ++   I W+V       G+ A   +   A     ++    FG       
Sbjct  126  IGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIWAAV  182

Query  252  LST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSLSLS  307
             +    + D     G    F S    C +   T    A DF  Y P   S   I  +++ 
Sbjct  183  KAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLVAVP  242

Query  308  GLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVALGL  367
            G    F L  + G   A        +           I+  F P  G     +++VAL  
Sbjct  243  GGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVALAQ  294

Query  368  IA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTNFLA  425
            +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT FL+
Sbjct  295  LGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTTFLS  352

Query  426  LMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAAFIA  471
            L+  +++    +I+                  R R    WY    N          AF A
Sbjct  353  LLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRAFAA  404

Query  472  FLVGWAGAVLCMAQLWYIGPLAKLVGEY  499
            ++VG A  +   +    I      +  +
Sbjct  405  YIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.325    0.140    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00010547

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  77.0    1e-15


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 77.0 bits (190),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 154/451 (34%), Gaps = 56/451 (12%)

Query  82   KKLTWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWM  141
            ++ TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +
Sbjct  5    EERTWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALL  62

Query  142  ATRGPLSGIRTMAFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILSAVSPNG---  198
               G   G+      R + G   S +  +L  +   G+  I   +G + L  +       
Sbjct  63   GRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGH  122

Query  199  ------NLSVAVGIVIIALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSST  248
                       +  ++   I W+V       G+ A   +   A     ++    FG    
Sbjct  123  WLWIGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIW  179

Query  249  KYDLST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSL  304
                +    + D     G    F S    C +   T    A DF  Y P   S   I  +
Sbjct  180  AAVKAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLV  239

Query  305  SLSGLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVA  364
            ++ G    F L  + G   A        +           I+  F P  G     +++VA
Sbjct  240  AVPGGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVA  291

Query  365  LGLIA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTN  422
            L  +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT 
Sbjct  292  LAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTT  349

Query  423  FLALMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAA  468
            FL+L+  +++    +I+                  R R    WY    N          A
Sbjct  350  FLSLLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRA  401

Query  469  FIAFLVGWAGAVLCMAQLWYIGPLAKLVGEY  499
            F A++VG A  +   +    I      +  +
Sbjct  402  FAAYIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.325    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00017197

Length=220


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00017198

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  73.2    2e-14


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 73.2 bits (180),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 93/448 (21%), Positives = 152/448 (34%), Gaps = 61/448 (14%)

Query  85   TWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWMATR  144
            TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +   
Sbjct  8    TWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALLGRA  65

Query  145  GPLSGIRTMAFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILS------------  192
            G   G+      R + G   S +  +L  +   G+  I   +G + L             
Sbjct  66   GAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGHWLW  125

Query  193  --AVSPNGNLSVAVALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSSTKYD  246
              A+   G   +    I W+V       G+ A   +   A     ++    FG       
Sbjct  126  IGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIWAAV  182

Query  247  LST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSLSLS  302
             +    + D     G    F S    C +   T    A DF  Y P   S   I  +++ 
Sbjct  183  KAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLVAVP  242

Query  303  GLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVALGL  362
            G    F L  + G   A        +           I+  F P  G     +++VAL  
Sbjct  243  GGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVALAQ  294

Query  363  IA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTNFLA  420
            +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT FL+
Sbjct  295  LGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTTFLS  352

Query  421  LMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAAFIA  466
            L+  +++    +I+                  R R    WY    N          AF A
Sbjct  353  LLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRAFAA  404

Query  467  FLVGWAGAVLCMAQLWYIGPLAKLVGEY  494
            ++VG A  +   +    I      +  +
Sbjct  405  YIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.324    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 634393654


Query= TCONS_00017199

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00017200

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00017201

Length=220


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00010548

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  77.0    1e-15


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 77.0 bits (190),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 154/451 (34%), Gaps = 56/451 (12%)

Query  82   KKLTWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWM  141
            ++ TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +
Sbjct  5    EERTWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALL  62

Query  142  ATRGPLSGIRTMAFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILSAVSPNG---  198
               G   G+      R + G   S +  +L  +   G+  I   +G + L  +       
Sbjct  63   GRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGH  122

Query  199  ------NLSVAVGIVIIALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSST  248
                       +  ++   I W+V       G+ A   +   A     ++    FG    
Sbjct  123  WLWIGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIW  179

Query  249  KYDLST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSL  304
                +    + D     G    F S    C +   T    A DF  Y P   S   I  +
Sbjct  180  AAVKAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLV  239

Query  305  SLSGLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVA  364
            ++ G    F L  + G   A        +           I+  F P  G     +++VA
Sbjct  240  AVPGGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVA  291

Query  365  LGLIA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTN  422
            L  +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT 
Sbjct  292  LAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTT  349

Query  423  FLALMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAA  468
            FL+L+  +++    +I+                  R R    WY    N          A
Sbjct  350  FLSLLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRA  401

Query  469  FIAFLVGWAGAVLCMAQLWYIGPLAKLVGEY  499
            F A++VG A  +   +    I      +  +
Sbjct  402  FAAYIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.325    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0714    0.140     1.90     42.6     43.6 

Effective search space used: 663160908


Query= TCONS_00017202

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.120    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00017203

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  78.2    7e-16


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 78.2 bits (193),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 155/451 (34%), Gaps = 56/451 (12%)

Query  82   KKLTWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWM  141
            ++ TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +
Sbjct  5    EERTWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALL  62

Query  142  ATRGPLSGIRTMVFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILSAVSPNG---  198
               G   G+   +  R + G   S +  +L  +   G+  I   +G + L  +       
Sbjct  63   GRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGH  122

Query  199  ------NLSVAVGIVIIALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSST  248
                       +  ++   I W+V       G+ A   +   A     ++    FG    
Sbjct  123  WLWIGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIW  179

Query  249  KYDLST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSL  304
                +    + D     G    F S    C +   T    A DF  Y P   S   I  +
Sbjct  180  AAVKAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLV  239

Query  305  SLSGLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVA  364
            ++ G    F L  + G   A        +           I+  F P  G     +++VA
Sbjct  240  AVPGGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVA  291

Query  365  LGLIA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTN  422
            L  +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT 
Sbjct  292  LAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTT  349

Query  423  FLALMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAA  468
            FL+L+  +++    +I+                  R R    WY    N          A
Sbjct  350  FLSLLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRA  401

Query  469  FIAFLVGWAGAVLCMAQLWYIGPLAKLVGEY  499
            F A++VG A  +   +    I      +  +
Sbjct  402  FAAYIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.325    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 663160908


Query= TCONS_00017204

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  77.0    1e-15


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 77.0 bits (190),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 154/451 (34%), Gaps = 56/451 (12%)

Query  82   KKLTWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWM  141
            ++ TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +
Sbjct  5    EERTWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALL  62

Query  142  ATRGPLSGIRTMAFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILSAVSPNG---  198
               G   G+      R + G   S +  +L  +   G+  I   +G + L  +       
Sbjct  63   GRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGH  122

Query  199  ------NLSVAVGIVIIALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSST  248
                       +  ++   I W+V       G+ A   +   A     ++    FG    
Sbjct  123  WLWIGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIW  179

Query  249  KYDLST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSL  304
                +    + D     G    F S    C +   T    A DF  Y P   S   I  +
Sbjct  180  AAVKAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLV  239

Query  305  SLSGLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVA  364
            ++ G    F L  + G   A        +           I+  F P  G     +++VA
Sbjct  240  AVPGGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVA  291

Query  365  LGLIA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTN  422
            L  +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT 
Sbjct  292  LAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTT  349

Query  423  FLALMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAA  468
            FL+L+  +++    +I+                  R R    WY    N          A
Sbjct  350  FLSLLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRA  401

Query  469  FIAFLVGWAGAVLCMAQLWYIGPLAKLVGEY  499
            F A++VG A  +   +    I      +  +
Sbjct  402  FAAYIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.325    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 663160908


Query= TCONS_00017205

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.118    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00017206

Length=220


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00017207

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  73.6    2e-14


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 73.6 bits (181),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 93/448 (21%), Positives = 152/448 (34%), Gaps = 61/448 (14%)

Query  85   TWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWMATR  144
            TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +   
Sbjct  8    TWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALLGRA  65

Query  145  GPLSGIRTMAFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILS------------  192
            G   G+      R + G   S +  +L  +   G+  I   +G + L             
Sbjct  66   GAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGHWLW  125

Query  193  --AVSPNGNLSVAVALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSSTKYD  246
              A+   G   +    I W+V       G+ A   +   A     ++    FG       
Sbjct  126  IGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIWAAV  182

Query  247  LST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSLSLS  302
             +    + D     G    F S    C +   T    A DF  Y P   S   I  +++ 
Sbjct  183  KAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLVAVP  242

Query  303  GLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVALGL  362
            G    F L  + G   A        +           I+  F P  G     +++VAL  
Sbjct  243  GGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVALAQ  294

Query  363  IA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTNFLA  420
            +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT FL+
Sbjct  295  LGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTTFLS  352

Query  421  LMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAAFIA  466
            L+  +++    +I+                  R R    WY    N          AF A
Sbjct  353  LLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRAFAA  404

Query  467  FLVGWAGAVLCMAQLWYIGPLAKLVGEY  494
            ++VG A  +   +    I      +  +
Sbjct  405  YIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.325    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00010549

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.119    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00017208

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  77.0    1e-15


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 77.0 bits (190),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 154/451 (34%), Gaps = 56/451 (12%)

Query  82   KKLTWVSYTQAFLLWVSINLAANNITLGMLGPVVYGLSFLDSALCSVLGALLGSIVSSWM  141
            ++ TW +    F  W+  N   N   +G LG V  GL++  S L  + G L+G+I  + +
Sbjct  5    EERTWSTR-NLFSFWLGANFNINTWVIGALG-VALGLNWWQSVLAIIAGNLIGAIFVALL  62

Query  142  ATRGPLSGIRTMAFGRYAMGWWPSKIVVILNLIQMLGYCLIDCVVGGQILSAVSPNG---  198
               G   G+      R + G   S +  +L  +   G+  I   +G + L  +       
Sbjct  63   GRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGH  122

Query  199  ------NLSVAVGIVIIALISWVVAT----FGIDAFHYYERYAFLPQMIVVCILFGVSST  248
                       +  ++   I W+V       G+ A   +   A     ++    FG    
Sbjct  123  WLWIGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAP---LIPVAAFGFLIW  179

Query  249  KYDLST-PSMGDTRTIIGNRLSFFS---ICVSAAITYAPLAADFFVYYPEGTSKLAIFSL  304
                +    + D     G    F S    C +   T    A DF  Y P   S   I  +
Sbjct  180  AAVKAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLV  239

Query  305  SLSGLMVSFTLAFLAGIGLASGIPSHLEYSAAYAKGAGALIVEGFGPLHGFGKFCSVVVA  364
            ++ G    F L  + G   A        +           I+  F P  G     +++VA
Sbjct  240  AVPGGFTLFALIGILGAAAAYAAYGAPAWD-------PLDILARFDPTAG-VFLPAILVA  291

Query  365  LGLIA-NTVAPTYSAGVDFQ-ILGRYAEMVPRAIWNTIGVVIYIVCGLAGRSHLSEIFTN  422
            L  +  N  A  YSAG D   +L +       ++   I  ++     L G S  + +FT 
Sbjct  292  LAQLGTNISANLYSAGSDLAALLPKKINRKRGSLIAAIIALVICPWKLLGNS--AFMFTT  349

Query  423  FLALMGYWVAIWFAIILE------------ERCIFRLRSGYNWY--AWNDPSKLPMGIAA  468
            FL+L+  +++    +I+                  R R    WY    N          A
Sbjct  350  FLSLLSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAYWYRGGVN--------WRA  401

Query  469  FIAFLVGWAGAVLCMAQLWYIGPLAKLVGEY  499
            F A++VG A  +   +    I      +  +
Sbjct  402  FAAYIVGIAAGLPGFSGSVGIKVPPGAMLGF  432



Lambda      K        H        a         alpha
   0.325    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00010551

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00010552

Length=140
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426131 pfam01215, COX5B, Cytochrome c oxidase subunit Vb          122     2e-37


>CDD:426131 pfam01215, COX5B, Cytochrome c oxidase subunit Vb.  
Length=128

 Score = 122 bits (308),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 43/56 (77%), Positives = 52/56 (93%), Gaps = 0/56 (0%)

Query  65   FAEIKTEDDLIAPGAKPGTVPTDVEQATGLERLELIGKMQGIDIFDMRPLDASRKG  120
             AE+K  +DLI PGAKPGTVPTD+EQATGLERLEL+GK++GID+FDM+PLD+SRKG
Sbjct  10   LAEVKGPEDLIGPGAKPGTVPTDLEQATGLERLELLGKLEGIDVFDMKPLDSSRKG  65



Lambda      K        H        a         alpha
   0.323    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00017210

Length=2346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400431 pfam08083, PROCN, PROCN (NUC071) domain. The PROCN dom...  875     0.0   
CDD:462361 pfam08082, PRO8NT, PRO8NT (NUC069), PrP8 N-terminal do...  330     6e-105
CDD:402297 pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 of ...  278     2e-87 
CDD:463163 pfam10598, RRM_4, RNA recognition motif of the spliceo...  162     5e-47 
CDD:431383 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain o...  129     8e-35 


>CDD:400431 pfam08083, PROCN, PROCN (NUC071) domain.  The PROCN domain is 
the central domain in pre-mRNA splicing factors of PRO8 family.
Length=402

 Score = 875 bits (2263),  Expect = 0.0, Method: Composition-based stats.
 Identities = 331/402 (82%), Positives = 366/402 (91%), Gaps = 0/402 (0%)

Query  411  TPDTASAIALWWAPHPFNKRSGKMVRAQDVPLVKQWYLEHCPQGQPVKVRVSYQKLLKTY  470
              +T   I+L+WAP+PFN+RSG+  RAQDVPL+K WY EH P   PVKVRVSYQKLLK Y
Sbjct  1    NENTKDGISLYWAPYPFNRRSGRTKRAQDVPLIKHWYREHPPSNYPVKVRVSYQKLLKNY  60

Query  471  VLNELHKKKPKAQNKQNLLRTLKSTKFFQQTTIDWVEAGLQVCRQGFNMLNLLIHRKNLT  530
            VLNELH +K K   K+NLL++LK+TKFFQQTTIDWVEAGLQVCRQG NMLNLLIHRK LT
Sbjct  61   VLNELHHRKQKKHKKKNLLKSLKNTKFFQQTTIDWVEAGLQVCRQGHNMLNLLIHRKGLT  120

Query  531  YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLMREILRLTKLIVDAQVQYRLGNIDAFQL  590
            YLHLDYNFNLKP KTLTTKERKKSRFGNAFHL+RE+LRLTKL+VDA VQYRLGNIDA+QL
Sbjct  121  YLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLIRELLRLTKLLVDAHVQYRLGNIDAYQL  180

Query  591  ADGILYAFNHVGQLTGMYRYKYKLMHQIRSCKDLKHLIYYRFNSGPVGKGPGCGFWAPAW  650
            ADG+ Y FNHVGQLTGMYRYKYK+M QIR+CKDLKH+IY RFN+G VGKGPGCGFWAP+W
Sbjct  181  ADGLQYIFNHVGQLTGMYRYKYKVMRQIRACKDLKHVIYSRFNTGEVGKGPGCGFWAPSW  240

Query  651  RVWLFFMRGIIPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLELRASVMADLM  710
            RVW+FF+RGIIPLLERWLGNLL+RQFEGR SK VAKT+TKQRVES++DLELRASVM D++
Sbjct  241  RVWIFFLRGIIPLLERWLGNLLARQFEGRKSKDVAKTITKQRVESYYDLELRASVMHDIL  300

Query  711  DMMPEGIKQNKVNTVLQHLSEAWRCWKSNIPWKVPGLPAPIENIILRYVKSKADWWISVA  770
            DMMPEG+KQNK  T+LQHLSEAWRCWK+NIPWKVPGLP PIENIILRYVK+KADWW SVA
Sbjct  301  DMMPEGVKQNKARTILQHLSEAWRCWKANIPWKVPGLPEPIENIILRYVKAKADWWTSVA  360

Query  771  HYNRERIRRGATVDKTVAKKNLGRLTRLWLKAEQERQHNYLK  812
            HYNRERI+RGATVDKTVAKKNLGRLTRLWLKAEQERQ NYLK
Sbjct  361  HYNRERIKRGATVDKTVAKKNLGRLTRLWLKAEQERQANYLK  402


>CDD:462361 pfam08082, PRO8NT, PRO8NT (NUC069), PrP8 N-terminal domain.  
The PRO8NT domain is found at the N-terminus of pre-mRNA splicing 
factors of PRO8 family. The NLS or nuclear localization 
signal for these spliceosome proteins begins at the start 
and runs for 60 residues. N-terminal to this domain is a highly 
variable proline-rich region.
Length=152

 Score = 330 bits (847),  Expect = 6e-105, Method: Composition-based stats.
 Identities = 118/152 (78%), Positives = 133/152 (88%), Gaps = 0/152 (0%)

Query  67   KADMPPEHLRKIVRDIGDVSQKKFSNEKRSYLGALKFMPHAVLKLLENMPMPWESAREVK  126
            K DMPPEHLRKI++D GD+S KKF ++KRSYLGALK+MPHAVLKLLENMPMPWE  REVK
Sbjct  1    KEDMPPEHLRKIIKDHGDMSSKKFRSDKRSYLGALKYMPHAVLKLLENMPMPWEEVREVK  60

Query  127  VLYHVNGCLTLVNETPRVIEPVFHAQWATMWVCMRREKCDRRHFKRMRFPPFDDEEPPLS  186
            VLYHV G +T VNE PRVIEPV+ AQW+TMW+ MRREK DRRHFKRMRFPPFDDEEPPL 
Sbjct  61   VLYHVTGAITFVNEIPRVIEPVYIAQWSTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD  120

Query  187  WSENIEDVEPLEPVQMELDESEDAPVYEWFYD  218
            +++NI DVEPLE +QMELDE EDA V +WFYD
Sbjct  121  YADNILDVEPLEAIQMELDEEEDAAVIDWFYD  152


>CDD:402297 pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 of PrP8.  
The essential spliceosomal protein Prp8 interacts with U5 and 
U6 snRNAs and with specific pre-mRNA sequences that participate 
in catalysis. This close association with crucial RNA 
sequences, together with extensive genetic evidence, suggests 
that Prp8 could directly affect the function of the catalytic 
core, perhaps acting as a splicing cofactor.
Length=134

 Score = 278 bits (714),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 105/134 (78%), Positives = 117/134 (87%), Gaps = 0/134 (0%)

Query  1226  KDSVWSLVDNATKERTAHAFLQVTEEDIQKFNNRIRQILMSSGSTTFTKIANKWNTALIA  1285
              + VW L++ +TKERTA AFLQV+EE I  F NRIRQILMSSGSTTFTKIANKWNTALIA
Sbjct  1     NEGVWDLINESTKERTAKAFLQVSEESINNFRNRIRQILMSSGSTTFTKIANKWNTALIA  60

Query  1286  LFTYYREAAVSTVNLLDTIVKCETKIQTRVKIGLNSKMPSRFPPAVFYTPKELGGLGMIS  1345
             LFTY+REA VST  LLD +VKCET++Q RVK+GLNSKMPSRFPPAVFYTPKELGGLGM+S
Sbjct  61    LFTYFREAIVSTEELLDILVKCETRVQNRVKLGLNSKMPSRFPPAVFYTPKELGGLGMLS  120

Query  1346  GSHILIPASDKRWS  1359
               H+LIPASD RWS
Sbjct  121   AGHVLIPASDLRWS  134


>CDD:463163 pfam10598, RRM_4, RNA recognition motif of the spliceosomal PrP8. 
 The large RNA-protein complex of the spliceosome catalyzes 
pre-mRNA splicing. One of the most conserved core proteins 
is PrP8 which occupies a central position in the catalytic 
core of the spliceosome, and has been implicated in several 
crucial molecular rearrangements that occur there, and has 
recently come under the spotlight for its role in the inherited 
human disease, Retinitis Pigmentosa. The RNA-recognition 
motif of PrP8 is highly conserved and provides a possible 
RNA binding centre for the 5-prime SS, BP, or 3-prime SS of 
pre-mRNA which are known to contact with Prp8. The most conserved 
regions of an RRM are defined as the RNP1 and RNP2 sequences. 
Recognition of RNA targets can also be modulated by 
a number of other factors, most notably the two loops beta1-alpha1, 
beta2-beta3 and the amino acid residues C-terminal 
to the RNP2 domain.
Length=92

 Score = 162 bits (411),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 76/92 (83%), Positives = 87/92 (95%), Gaps = 0/92 (0%)

Query  1002  EKIDLTLLNRLLRLIMDHNLADYITSKNNVQLSYKDMNHTNSYGLIRGLQFSGFVFQYYG  1061
             EKIDLTLLNRLLRLIMDHNLADYIT+KNNV L++KDM+H NSYGLIRGLQFS FV+QYYG
Sbjct  1     EKIDLTLLNRLLRLIMDHNLADYITAKNNVVLTFKDMSHVNSYGLIRGLQFSSFVYQYYG  60

Query  1062  LMIDLLLLGLQRASEMAGPPQSPNDFLQFRDR  1093
             L++DLL+LGLQRASE+AGPPQ PN+FLQF+D 
Sbjct  61    LVLDLLILGLQRASEIAGPPQMPNEFLQFKDI  92


>CDD:431383 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain of PrP8. 
 This domain incorporates the interacting site for the U6-snRNA 
as part of the U4/U6.U5 tri-snRNPs complex of the spliceosome, 
and is the prime candidate for the role of cofactor 
for the spliceosome's RNA core. The essential spliceosomal protein 
Prp8 interacts with U5 and U6 snRNAs and with specific 
pre-mRNA sequences that participate in catalysis. This close 
association with crucial RNA sequences, together with extensive 
genetic evidence, suggests that Prp8 could directly affect 
the function of the catalytic core, perhaps acting as 
a splicing cofactor.
Length=159

 Score = 129 bits (327),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 53/65 (82%), Positives = 58/65 (89%), Gaps = 0/65 (0%)

Query  1458  FKQYQLMKSNPFWWTSQRHDGKLWNLNAYRTDVIQALGGVETILEHTLFKATAFPSWEGL  1517
             FK+YQL+K NPFWWT  RHDGKLWNL  YRTD+IQALGGVE ILEHTLFKAT FPSWEGL
Sbjct  1     FKKYQLLKYNPFWWTHARHDGKLWNLERYRTDIIQALGGVEGILEHTLFKATGFPSWEGL  60

Query  1518  FWERA  1522
             FW++A
Sbjct  61    FWDKA  65



Lambda      K        H        a         alpha
   0.319    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2912819712


Query= TCONS_00017211

Length=2346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400431 pfam08083, PROCN, PROCN (NUC071) domain. The PROCN dom...  875     0.0   
CDD:462361 pfam08082, PRO8NT, PRO8NT (NUC069), PrP8 N-terminal do...  330     6e-105
CDD:402297 pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 of ...  278     2e-87 
CDD:463163 pfam10598, RRM_4, RNA recognition motif of the spliceo...  162     5e-47 
CDD:431383 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain o...  129     8e-35 


>CDD:400431 pfam08083, PROCN, PROCN (NUC071) domain.  The PROCN domain is 
the central domain in pre-mRNA splicing factors of PRO8 family.
Length=402

 Score = 875 bits (2263),  Expect = 0.0, Method: Composition-based stats.
 Identities = 331/402 (82%), Positives = 366/402 (91%), Gaps = 0/402 (0%)

Query  411  TPDTASAIALWWAPHPFNKRSGKMVRAQDVPLVKQWYLEHCPQGQPVKVRVSYQKLLKTY  470
              +T   I+L+WAP+PFN+RSG+  RAQDVPL+K WY EH P   PVKVRVSYQKLLK Y
Sbjct  1    NENTKDGISLYWAPYPFNRRSGRTKRAQDVPLIKHWYREHPPSNYPVKVRVSYQKLLKNY  60

Query  471  VLNELHKKKPKAQNKQNLLRTLKSTKFFQQTTIDWVEAGLQVCRQGFNMLNLLIHRKNLT  530
            VLNELH +K K   K+NLL++LK+TKFFQQTTIDWVEAGLQVCRQG NMLNLLIHRK LT
Sbjct  61   VLNELHHRKQKKHKKKNLLKSLKNTKFFQQTTIDWVEAGLQVCRQGHNMLNLLIHRKGLT  120

Query  531  YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLMREILRLTKLIVDAQVQYRLGNIDAFQL  590
            YLHLDYNFNLKP KTLTTKERKKSRFGNAFHL+RE+LRLTKL+VDA VQYRLGNIDA+QL
Sbjct  121  YLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLIRELLRLTKLLVDAHVQYRLGNIDAYQL  180

Query  591  ADGILYAFNHVGQLTGMYRYKYKLMHQIRSCKDLKHLIYYRFNSGPVGKGPGCGFWAPAW  650
            ADG+ Y FNHVGQLTGMYRYKYK+M QIR+CKDLKH+IY RFN+G VGKGPGCGFWAP+W
Sbjct  181  ADGLQYIFNHVGQLTGMYRYKYKVMRQIRACKDLKHVIYSRFNTGEVGKGPGCGFWAPSW  240

Query  651  RVWLFFMRGIIPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLELRASVMADLM  710
            RVW+FF+RGIIPLLERWLGNLL+RQFEGR SK VAKT+TKQRVES++DLELRASVM D++
Sbjct  241  RVWIFFLRGIIPLLERWLGNLLARQFEGRKSKDVAKTITKQRVESYYDLELRASVMHDIL  300

Query  711  DMMPEGIKQNKVNTVLQHLSEAWRCWKSNIPWKVPGLPAPIENIILRYVKSKADWWISVA  770
            DMMPEG+KQNK  T+LQHLSEAWRCWK+NIPWKVPGLP PIENIILRYVK+KADWW SVA
Sbjct  301  DMMPEGVKQNKARTILQHLSEAWRCWKANIPWKVPGLPEPIENIILRYVKAKADWWTSVA  360

Query  771  HYNRERIRRGATVDKTVAKKNLGRLTRLWLKAEQERQHNYLK  812
            HYNRERI+RGATVDKTVAKKNLGRLTRLWLKAEQERQ NYLK
Sbjct  361  HYNRERIKRGATVDKTVAKKNLGRLTRLWLKAEQERQANYLK  402


>CDD:462361 pfam08082, PRO8NT, PRO8NT (NUC069), PrP8 N-terminal domain.  
The PRO8NT domain is found at the N-terminus of pre-mRNA splicing 
factors of PRO8 family. The NLS or nuclear localization 
signal for these spliceosome proteins begins at the start 
and runs for 60 residues. N-terminal to this domain is a highly 
variable proline-rich region.
Length=152

 Score = 330 bits (847),  Expect = 6e-105, Method: Composition-based stats.
 Identities = 118/152 (78%), Positives = 133/152 (88%), Gaps = 0/152 (0%)

Query  67   KADMPPEHLRKIVRDIGDVSQKKFSNEKRSYLGALKFMPHAVLKLLENMPMPWESAREVK  126
            K DMPPEHLRKI++D GD+S KKF ++KRSYLGALK+MPHAVLKLLENMPMPWE  REVK
Sbjct  1    KEDMPPEHLRKIIKDHGDMSSKKFRSDKRSYLGALKYMPHAVLKLLENMPMPWEEVREVK  60

Query  127  VLYHVNGCLTLVNETPRVIEPVFHAQWATMWVCMRREKCDRRHFKRMRFPPFDDEEPPLS  186
            VLYHV G +T VNE PRVIEPV+ AQW+TMW+ MRREK DRRHFKRMRFPPFDDEEPPL 
Sbjct  61   VLYHVTGAITFVNEIPRVIEPVYIAQWSTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD  120

Query  187  WSENIEDVEPLEPVQMELDESEDAPVYEWFYD  218
            +++NI DVEPLE +QMELDE EDA V +WFYD
Sbjct  121  YADNILDVEPLEAIQMELDEEEDAAVIDWFYD  152


>CDD:402297 pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 of PrP8.  
The essential spliceosomal protein Prp8 interacts with U5 and 
U6 snRNAs and with specific pre-mRNA sequences that participate 
in catalysis. This close association with crucial RNA 
sequences, together with extensive genetic evidence, suggests 
that Prp8 could directly affect the function of the catalytic 
core, perhaps acting as a splicing cofactor.
Length=134

 Score = 278 bits (714),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 105/134 (78%), Positives = 117/134 (87%), Gaps = 0/134 (0%)

Query  1226  KDSVWSLVDNATKERTAHAFLQVTEEDIQKFNNRIRQILMSSGSTTFTKIANKWNTALIA  1285
              + VW L++ +TKERTA AFLQV+EE I  F NRIRQILMSSGSTTFTKIANKWNTALIA
Sbjct  1     NEGVWDLINESTKERTAKAFLQVSEESINNFRNRIRQILMSSGSTTFTKIANKWNTALIA  60

Query  1286  LFTYYREAAVSTVNLLDTIVKCETKIQTRVKIGLNSKMPSRFPPAVFYTPKELGGLGMIS  1345
             LFTY+REA VST  LLD +VKCET++Q RVK+GLNSKMPSRFPPAVFYTPKELGGLGM+S
Sbjct  61    LFTYFREAIVSTEELLDILVKCETRVQNRVKLGLNSKMPSRFPPAVFYTPKELGGLGMLS  120

Query  1346  GSHILIPASDKRWS  1359
               H+LIPASD RWS
Sbjct  121   AGHVLIPASDLRWS  134


>CDD:463163 pfam10598, RRM_4, RNA recognition motif of the spliceosomal PrP8. 
 The large RNA-protein complex of the spliceosome catalyzes 
pre-mRNA splicing. One of the most conserved core proteins 
is PrP8 which occupies a central position in the catalytic 
core of the spliceosome, and has been implicated in several 
crucial molecular rearrangements that occur there, and has 
recently come under the spotlight for its role in the inherited 
human disease, Retinitis Pigmentosa. The RNA-recognition 
motif of PrP8 is highly conserved and provides a possible 
RNA binding centre for the 5-prime SS, BP, or 3-prime SS of 
pre-mRNA which are known to contact with Prp8. The most conserved 
regions of an RRM are defined as the RNP1 and RNP2 sequences. 
Recognition of RNA targets can also be modulated by 
a number of other factors, most notably the two loops beta1-alpha1, 
beta2-beta3 and the amino acid residues C-terminal 
to the RNP2 domain.
Length=92

 Score = 162 bits (411),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 76/92 (83%), Positives = 87/92 (95%), Gaps = 0/92 (0%)

Query  1002  EKIDLTLLNRLLRLIMDHNLADYITSKNNVQLSYKDMNHTNSYGLIRGLQFSGFVFQYYG  1061
             EKIDLTLLNRLLRLIMDHNLADYIT+KNNV L++KDM+H NSYGLIRGLQFS FV+QYYG
Sbjct  1     EKIDLTLLNRLLRLIMDHNLADYITAKNNVVLTFKDMSHVNSYGLIRGLQFSSFVYQYYG  60

Query  1062  LMIDLLLLGLQRASEMAGPPQSPNDFLQFRDR  1093
             L++DLL+LGLQRASE+AGPPQ PN+FLQF+D 
Sbjct  61    LVLDLLILGLQRASEIAGPPQMPNEFLQFKDI  92


>CDD:431383 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain of PrP8. 
 This domain incorporates the interacting site for the U6-snRNA 
as part of the U4/U6.U5 tri-snRNPs complex of the spliceosome, 
and is the prime candidate for the role of cofactor 
for the spliceosome's RNA core. The essential spliceosomal protein 
Prp8 interacts with U5 and U6 snRNAs and with specific 
pre-mRNA sequences that participate in catalysis. This close 
association with crucial RNA sequences, together with extensive 
genetic evidence, suggests that Prp8 could directly affect 
the function of the catalytic core, perhaps acting as 
a splicing cofactor.
Length=159

 Score = 129 bits (327),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 53/65 (82%), Positives = 58/65 (89%), Gaps = 0/65 (0%)

Query  1458  FKQYQLMKSNPFWWTSQRHDGKLWNLNAYRTDVIQALGGVETILEHTLFKATAFPSWEGL  1517
             FK+YQL+K NPFWWT  RHDGKLWNL  YRTD+IQALGGVE ILEHTLFKAT FPSWEGL
Sbjct  1     FKKYQLLKYNPFWWTHARHDGKLWNLERYRTDIIQALGGVEGILEHTLFKATGFPSWEGL  60

Query  1518  FWERA  1522
             FW++A
Sbjct  61    FWDKA  65



Lambda      K        H        a         alpha
   0.319    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2912819712


Query= TCONS_00010558

Length=2346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400431 pfam08083, PROCN, PROCN (NUC071) domain. The PROCN dom...  875     0.0   
CDD:462361 pfam08082, PRO8NT, PRO8NT (NUC069), PrP8 N-terminal do...  330     6e-105
CDD:402297 pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 of ...  278     2e-87 
CDD:463163 pfam10598, RRM_4, RNA recognition motif of the spliceo...  162     5e-47 
CDD:431383 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain o...  129     8e-35 


>CDD:400431 pfam08083, PROCN, PROCN (NUC071) domain.  The PROCN domain is 
the central domain in pre-mRNA splicing factors of PRO8 family.
Length=402

 Score = 875 bits (2263),  Expect = 0.0, Method: Composition-based stats.
 Identities = 331/402 (82%), Positives = 366/402 (91%), Gaps = 0/402 (0%)

Query  411  TPDTASAIALWWAPHPFNKRSGKMVRAQDVPLVKQWYLEHCPQGQPVKVRVSYQKLLKTY  470
              +T   I+L+WAP+PFN+RSG+  RAQDVPL+K WY EH P   PVKVRVSYQKLLK Y
Sbjct  1    NENTKDGISLYWAPYPFNRRSGRTKRAQDVPLIKHWYREHPPSNYPVKVRVSYQKLLKNY  60

Query  471  VLNELHKKKPKAQNKQNLLRTLKSTKFFQQTTIDWVEAGLQVCRQGFNMLNLLIHRKNLT  530
            VLNELH +K K   K+NLL++LK+TKFFQQTTIDWVEAGLQVCRQG NMLNLLIHRK LT
Sbjct  61   VLNELHHRKQKKHKKKNLLKSLKNTKFFQQTTIDWVEAGLQVCRQGHNMLNLLIHRKGLT  120

Query  531  YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLMREILRLTKLIVDAQVQYRLGNIDAFQL  590
            YLHLDYNFNLKP KTLTTKERKKSRFGNAFHL+RE+LRLTKL+VDA VQYRLGNIDA+QL
Sbjct  121  YLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLIRELLRLTKLLVDAHVQYRLGNIDAYQL  180

Query  591  ADGILYAFNHVGQLTGMYRYKYKLMHQIRSCKDLKHLIYYRFNSGPVGKGPGCGFWAPAW  650
            ADG+ Y FNHVGQLTGMYRYKYK+M QIR+CKDLKH+IY RFN+G VGKGPGCGFWAP+W
Sbjct  181  ADGLQYIFNHVGQLTGMYRYKYKVMRQIRACKDLKHVIYSRFNTGEVGKGPGCGFWAPSW  240

Query  651  RVWLFFMRGIIPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLELRASVMADLM  710
            RVW+FF+RGIIPLLERWLGNLL+RQFEGR SK VAKT+TKQRVES++DLELRASVM D++
Sbjct  241  RVWIFFLRGIIPLLERWLGNLLARQFEGRKSKDVAKTITKQRVESYYDLELRASVMHDIL  300

Query  711  DMMPEGIKQNKVNTVLQHLSEAWRCWKSNIPWKVPGLPAPIENIILRYVKSKADWWISVA  770
            DMMPEG+KQNK  T+LQHLSEAWRCWK+NIPWKVPGLP PIENIILRYVK+KADWW SVA
Sbjct  301  DMMPEGVKQNKARTILQHLSEAWRCWKANIPWKVPGLPEPIENIILRYVKAKADWWTSVA  360

Query  771  HYNRERIRRGATVDKTVAKKNLGRLTRLWLKAEQERQHNYLK  812
            HYNRERI+RGATVDKTVAKKNLGRLTRLWLKAEQERQ NYLK
Sbjct  361  HYNRERIKRGATVDKTVAKKNLGRLTRLWLKAEQERQANYLK  402


>CDD:462361 pfam08082, PRO8NT, PRO8NT (NUC069), PrP8 N-terminal domain.  
The PRO8NT domain is found at the N-terminus of pre-mRNA splicing 
factors of PRO8 family. The NLS or nuclear localization 
signal for these spliceosome proteins begins at the start 
and runs for 60 residues. N-terminal to this domain is a highly 
variable proline-rich region.
Length=152

 Score = 330 bits (847),  Expect = 6e-105, Method: Composition-based stats.
 Identities = 118/152 (78%), Positives = 133/152 (88%), Gaps = 0/152 (0%)

Query  67   KADMPPEHLRKIVRDIGDVSQKKFSNEKRSYLGALKFMPHAVLKLLENMPMPWESAREVK  126
            K DMPPEHLRKI++D GD+S KKF ++KRSYLGALK+MPHAVLKLLENMPMPWE  REVK
Sbjct  1    KEDMPPEHLRKIIKDHGDMSSKKFRSDKRSYLGALKYMPHAVLKLLENMPMPWEEVREVK  60

Query  127  VLYHVNGCLTLVNETPRVIEPVFHAQWATMWVCMRREKCDRRHFKRMRFPPFDDEEPPLS  186
            VLYHV G +T VNE PRVIEPV+ AQW+TMW+ MRREK DRRHFKRMRFPPFDDEEPPL 
Sbjct  61   VLYHVTGAITFVNEIPRVIEPVYIAQWSTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD  120

Query  187  WSENIEDVEPLEPVQMELDESEDAPVYEWFYD  218
            +++NI DVEPLE +QMELDE EDA V +WFYD
Sbjct  121  YADNILDVEPLEAIQMELDEEEDAAVIDWFYD  152


>CDD:402297 pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 of PrP8.  
The essential spliceosomal protein Prp8 interacts with U5 and 
U6 snRNAs and with specific pre-mRNA sequences that participate 
in catalysis. This close association with crucial RNA 
sequences, together with extensive genetic evidence, suggests 
that Prp8 could directly affect the function of the catalytic 
core, perhaps acting as a splicing cofactor.
Length=134

 Score = 278 bits (714),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 105/134 (78%), Positives = 117/134 (87%), Gaps = 0/134 (0%)

Query  1226  KDSVWSLVDNATKERTAHAFLQVTEEDIQKFNNRIRQILMSSGSTTFTKIANKWNTALIA  1285
              + VW L++ +TKERTA AFLQV+EE I  F NRIRQILMSSGSTTFTKIANKWNTALIA
Sbjct  1     NEGVWDLINESTKERTAKAFLQVSEESINNFRNRIRQILMSSGSTTFTKIANKWNTALIA  60

Query  1286  LFTYYREAAVSTVNLLDTIVKCETKIQTRVKIGLNSKMPSRFPPAVFYTPKELGGLGMIS  1345
             LFTY+REA VST  LLD +VKCET++Q RVK+GLNSKMPSRFPPAVFYTPKELGGLGM+S
Sbjct  61    LFTYFREAIVSTEELLDILVKCETRVQNRVKLGLNSKMPSRFPPAVFYTPKELGGLGMLS  120

Query  1346  GSHILIPASDKRWS  1359
               H+LIPASD RWS
Sbjct  121   AGHVLIPASDLRWS  134


>CDD:463163 pfam10598, RRM_4, RNA recognition motif of the spliceosomal PrP8. 
 The large RNA-protein complex of the spliceosome catalyzes 
pre-mRNA splicing. One of the most conserved core proteins 
is PrP8 which occupies a central position in the catalytic 
core of the spliceosome, and has been implicated in several 
crucial molecular rearrangements that occur there, and has 
recently come under the spotlight for its role in the inherited 
human disease, Retinitis Pigmentosa. The RNA-recognition 
motif of PrP8 is highly conserved and provides a possible 
RNA binding centre for the 5-prime SS, BP, or 3-prime SS of 
pre-mRNA which are known to contact with Prp8. The most conserved 
regions of an RRM are defined as the RNP1 and RNP2 sequences. 
Recognition of RNA targets can also be modulated by 
a number of other factors, most notably the two loops beta1-alpha1, 
beta2-beta3 and the amino acid residues C-terminal 
to the RNP2 domain.
Length=92

 Score = 162 bits (411),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 76/92 (83%), Positives = 87/92 (95%), Gaps = 0/92 (0%)

Query  1002  EKIDLTLLNRLLRLIMDHNLADYITSKNNVQLSYKDMNHTNSYGLIRGLQFSGFVFQYYG  1061
             EKIDLTLLNRLLRLIMDHNLADYIT+KNNV L++KDM+H NSYGLIRGLQFS FV+QYYG
Sbjct  1     EKIDLTLLNRLLRLIMDHNLADYITAKNNVVLTFKDMSHVNSYGLIRGLQFSSFVYQYYG  60

Query  1062  LMIDLLLLGLQRASEMAGPPQSPNDFLQFRDR  1093
             L++DLL+LGLQRASE+AGPPQ PN+FLQF+D 
Sbjct  61    LVLDLLILGLQRASEIAGPPQMPNEFLQFKDI  92


>CDD:431383 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain of PrP8. 
 This domain incorporates the interacting site for the U6-snRNA 
as part of the U4/U6.U5 tri-snRNPs complex of the spliceosome, 
and is the prime candidate for the role of cofactor 
for the spliceosome's RNA core. The essential spliceosomal protein 
Prp8 interacts with U5 and U6 snRNAs and with specific 
pre-mRNA sequences that participate in catalysis. This close 
association with crucial RNA sequences, together with extensive 
genetic evidence, suggests that Prp8 could directly affect 
the function of the catalytic core, perhaps acting as 
a splicing cofactor.
Length=159

 Score = 129 bits (327),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 53/65 (82%), Positives = 58/65 (89%), Gaps = 0/65 (0%)

Query  1458  FKQYQLMKSNPFWWTSQRHDGKLWNLNAYRTDVIQALGGVETILEHTLFKATAFPSWEGL  1517
             FK+YQL+K NPFWWT  RHDGKLWNL  YRTD+IQALGGVE ILEHTLFKAT FPSWEGL
Sbjct  1     FKKYQLLKYNPFWWTHARHDGKLWNLERYRTDIIQALGGVEGILEHTLFKATGFPSWEGL  60

Query  1518  FWERA  1522
             FW++A
Sbjct  61    FWDKA  65



Lambda      K        H        a         alpha
   0.319    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2912819712


Query= TCONS_00010554

Length=2346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400431 pfam08083, PROCN, PROCN (NUC071) domain. The PROCN dom...  875     0.0   
CDD:462361 pfam08082, PRO8NT, PRO8NT (NUC069), PrP8 N-terminal do...  330     6e-105
CDD:402297 pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 of ...  278     2e-87 
CDD:463163 pfam10598, RRM_4, RNA recognition motif of the spliceo...  162     5e-47 
CDD:431383 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain o...  129     8e-35 


>CDD:400431 pfam08083, PROCN, PROCN (NUC071) domain.  The PROCN domain is 
the central domain in pre-mRNA splicing factors of PRO8 family.
Length=402

 Score = 875 bits (2263),  Expect = 0.0, Method: Composition-based stats.
 Identities = 331/402 (82%), Positives = 366/402 (91%), Gaps = 0/402 (0%)

Query  411  TPDTASAIALWWAPHPFNKRSGKMVRAQDVPLVKQWYLEHCPQGQPVKVRVSYQKLLKTY  470
              +T   I+L+WAP+PFN+RSG+  RAQDVPL+K WY EH P   PVKVRVSYQKLLK Y
Sbjct  1    NENTKDGISLYWAPYPFNRRSGRTKRAQDVPLIKHWYREHPPSNYPVKVRVSYQKLLKNY  60

Query  471  VLNELHKKKPKAQNKQNLLRTLKSTKFFQQTTIDWVEAGLQVCRQGFNMLNLLIHRKNLT  530
            VLNELH +K K   K+NLL++LK+TKFFQQTTIDWVEAGLQVCRQG NMLNLLIHRK LT
Sbjct  61   VLNELHHRKQKKHKKKNLLKSLKNTKFFQQTTIDWVEAGLQVCRQGHNMLNLLIHRKGLT  120

Query  531  YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLMREILRLTKLIVDAQVQYRLGNIDAFQL  590
            YLHLDYNFNLKP KTLTTKERKKSRFGNAFHL+RE+LRLTKL+VDA VQYRLGNIDA+QL
Sbjct  121  YLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLIRELLRLTKLLVDAHVQYRLGNIDAYQL  180

Query  591  ADGILYAFNHVGQLTGMYRYKYKLMHQIRSCKDLKHLIYYRFNSGPVGKGPGCGFWAPAW  650
            ADG+ Y FNHVGQLTGMYRYKYK+M QIR+CKDLKH+IY RFN+G VGKGPGCGFWAP+W
Sbjct  181  ADGLQYIFNHVGQLTGMYRYKYKVMRQIRACKDLKHVIYSRFNTGEVGKGPGCGFWAPSW  240

Query  651  RVWLFFMRGIIPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLELRASVMADLM  710
            RVW+FF+RGIIPLLERWLGNLL+RQFEGR SK VAKT+TKQRVES++DLELRASVM D++
Sbjct  241  RVWIFFLRGIIPLLERWLGNLLARQFEGRKSKDVAKTITKQRVESYYDLELRASVMHDIL  300

Query  711  DMMPEGIKQNKVNTVLQHLSEAWRCWKSNIPWKVPGLPAPIENIILRYVKSKADWWISVA  770
            DMMPEG+KQNK  T+LQHLSEAWRCWK+NIPWKVPGLP PIENIILRYVK+KADWW SVA
Sbjct  301  DMMPEGVKQNKARTILQHLSEAWRCWKANIPWKVPGLPEPIENIILRYVKAKADWWTSVA  360

Query  771  HYNRERIRRGATVDKTVAKKNLGRLTRLWLKAEQERQHNYLK  812
            HYNRERI+RGATVDKTVAKKNLGRLTRLWLKAEQERQ NYLK
Sbjct  361  HYNRERIKRGATVDKTVAKKNLGRLTRLWLKAEQERQANYLK  402


>CDD:462361 pfam08082, PRO8NT, PRO8NT (NUC069), PrP8 N-terminal domain.  
The PRO8NT domain is found at the N-terminus of pre-mRNA splicing 
factors of PRO8 family. The NLS or nuclear localization 
signal for these spliceosome proteins begins at the start 
and runs for 60 residues. N-terminal to this domain is a highly 
variable proline-rich region.
Length=152

 Score = 330 bits (847),  Expect = 6e-105, Method: Composition-based stats.
 Identities = 118/152 (78%), Positives = 133/152 (88%), Gaps = 0/152 (0%)

Query  67   KADMPPEHLRKIVRDIGDVSQKKFSNEKRSYLGALKFMPHAVLKLLENMPMPWESAREVK  126
            K DMPPEHLRKI++D GD+S KKF ++KRSYLGALK+MPHAVLKLLENMPMPWE  REVK
Sbjct  1    KEDMPPEHLRKIIKDHGDMSSKKFRSDKRSYLGALKYMPHAVLKLLENMPMPWEEVREVK  60

Query  127  VLYHVNGCLTLVNETPRVIEPVFHAQWATMWVCMRREKCDRRHFKRMRFPPFDDEEPPLS  186
            VLYHV G +T VNE PRVIEPV+ AQW+TMW+ MRREK DRRHFKRMRFPPFDDEEPPL 
Sbjct  61   VLYHVTGAITFVNEIPRVIEPVYIAQWSTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD  120

Query  187  WSENIEDVEPLEPVQMELDESEDAPVYEWFYD  218
            +++NI DVEPLE +QMELDE EDA V +WFYD
Sbjct  121  YADNILDVEPLEAIQMELDEEEDAAVIDWFYD  152


>CDD:402297 pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 of PrP8.  
The essential spliceosomal protein Prp8 interacts with U5 and 
U6 snRNAs and with specific pre-mRNA sequences that participate 
in catalysis. This close association with crucial RNA 
sequences, together with extensive genetic evidence, suggests 
that Prp8 could directly affect the function of the catalytic 
core, perhaps acting as a splicing cofactor.
Length=134

 Score = 278 bits (714),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 105/134 (78%), Positives = 117/134 (87%), Gaps = 0/134 (0%)

Query  1226  KDSVWSLVDNATKERTAHAFLQVTEEDIQKFNNRIRQILMSSGSTTFTKIANKWNTALIA  1285
              + VW L++ +TKERTA AFLQV+EE I  F NRIRQILMSSGSTTFTKIANKWNTALIA
Sbjct  1     NEGVWDLINESTKERTAKAFLQVSEESINNFRNRIRQILMSSGSTTFTKIANKWNTALIA  60

Query  1286  LFTYYREAAVSTVNLLDTIVKCETKIQTRVKIGLNSKMPSRFPPAVFYTPKELGGLGMIS  1345
             LFTY+REA VST  LLD +VKCET++Q RVK+GLNSKMPSRFPPAVFYTPKELGGLGM+S
Sbjct  61    LFTYFREAIVSTEELLDILVKCETRVQNRVKLGLNSKMPSRFPPAVFYTPKELGGLGMLS  120

Query  1346  GSHILIPASDKRWS  1359
               H+LIPASD RWS
Sbjct  121   AGHVLIPASDLRWS  134


>CDD:463163 pfam10598, RRM_4, RNA recognition motif of the spliceosomal PrP8. 
 The large RNA-protein complex of the spliceosome catalyzes 
pre-mRNA splicing. One of the most conserved core proteins 
is PrP8 which occupies a central position in the catalytic 
core of the spliceosome, and has been implicated in several 
crucial molecular rearrangements that occur there, and has 
recently come under the spotlight for its role in the inherited 
human disease, Retinitis Pigmentosa. The RNA-recognition 
motif of PrP8 is highly conserved and provides a possible 
RNA binding centre for the 5-prime SS, BP, or 3-prime SS of 
pre-mRNA which are known to contact with Prp8. The most conserved 
regions of an RRM are defined as the RNP1 and RNP2 sequences. 
Recognition of RNA targets can also be modulated by 
a number of other factors, most notably the two loops beta1-alpha1, 
beta2-beta3 and the amino acid residues C-terminal 
to the RNP2 domain.
Length=92

 Score = 162 bits (411),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 76/92 (83%), Positives = 87/92 (95%), Gaps = 0/92 (0%)

Query  1002  EKIDLTLLNRLLRLIMDHNLADYITSKNNVQLSYKDMNHTNSYGLIRGLQFSGFVFQYYG  1061
             EKIDLTLLNRLLRLIMDHNLADYIT+KNNV L++KDM+H NSYGLIRGLQFS FV+QYYG
Sbjct  1     EKIDLTLLNRLLRLIMDHNLADYITAKNNVVLTFKDMSHVNSYGLIRGLQFSSFVYQYYG  60

Query  1062  LMIDLLLLGLQRASEMAGPPQSPNDFLQFRDR  1093
             L++DLL+LGLQRASE+AGPPQ PN+FLQF+D 
Sbjct  61    LVLDLLILGLQRASEIAGPPQMPNEFLQFKDI  92


>CDD:431383 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain of PrP8. 
 This domain incorporates the interacting site for the U6-snRNA 
as part of the U4/U6.U5 tri-snRNPs complex of the spliceosome, 
and is the prime candidate for the role of cofactor 
for the spliceosome's RNA core. The essential spliceosomal protein 
Prp8 interacts with U5 and U6 snRNAs and with specific 
pre-mRNA sequences that participate in catalysis. This close 
association with crucial RNA sequences, together with extensive 
genetic evidence, suggests that Prp8 could directly affect 
the function of the catalytic core, perhaps acting as 
a splicing cofactor.
Length=159

 Score = 129 bits (327),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 53/65 (82%), Positives = 58/65 (89%), Gaps = 0/65 (0%)

Query  1458  FKQYQLMKSNPFWWTSQRHDGKLWNLNAYRTDVIQALGGVETILEHTLFKATAFPSWEGL  1517
             FK+YQL+K NPFWWT  RHDGKLWNL  YRTD+IQALGGVE ILEHTLFKAT FPSWEGL
Sbjct  1     FKKYQLLKYNPFWWTHARHDGKLWNLERYRTDIIQALGGVEGILEHTLFKATGFPSWEGL  60

Query  1518  FWERA  1522
             FW++A
Sbjct  61    FWDKA  65



Lambda      K        H        a         alpha
   0.319    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0828    0.140     1.90     42.6     43.6 

Effective search space used: 2912819712


Query= TCONS_00010556

Length=2346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400431 pfam08083, PROCN, PROCN (NUC071) domain. The PROCN dom...  875     0.0   
CDD:462361 pfam08082, PRO8NT, PRO8NT (NUC069), PrP8 N-terminal do...  330     6e-105
CDD:402297 pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 of ...  278     2e-87 
CDD:463163 pfam10598, RRM_4, RNA recognition motif of the spliceo...  162     5e-47 
CDD:431383 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain o...  129     8e-35 


>CDD:400431 pfam08083, PROCN, PROCN (NUC071) domain.  The PROCN domain is 
the central domain in pre-mRNA splicing factors of PRO8 family.
Length=402

 Score = 875 bits (2263),  Expect = 0.0, Method: Composition-based stats.
 Identities = 331/402 (82%), Positives = 366/402 (91%), Gaps = 0/402 (0%)

Query  411  TPDTASAIALWWAPHPFNKRSGKMVRAQDVPLVKQWYLEHCPQGQPVKVRVSYQKLLKTY  470
              +T   I+L+WAP+PFN+RSG+  RAQDVPL+K WY EH P   PVKVRVSYQKLLK Y
Sbjct  1    NENTKDGISLYWAPYPFNRRSGRTKRAQDVPLIKHWYREHPPSNYPVKVRVSYQKLLKNY  60

Query  471  VLNELHKKKPKAQNKQNLLRTLKSTKFFQQTTIDWVEAGLQVCRQGFNMLNLLIHRKNLT  530
            VLNELH +K K   K+NLL++LK+TKFFQQTTIDWVEAGLQVCRQG NMLNLLIHRK LT
Sbjct  61   VLNELHHRKQKKHKKKNLLKSLKNTKFFQQTTIDWVEAGLQVCRQGHNMLNLLIHRKGLT  120

Query  531  YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLMREILRLTKLIVDAQVQYRLGNIDAFQL  590
            YLHLDYNFNLKP KTLTTKERKKSRFGNAFHL+RE+LRLTKL+VDA VQYRLGNIDA+QL
Sbjct  121  YLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLIRELLRLTKLLVDAHVQYRLGNIDAYQL  180

Query  591  ADGILYAFNHVGQLTGMYRYKYKLMHQIRSCKDLKHLIYYRFNSGPVGKGPGCGFWAPAW  650
            ADG+ Y FNHVGQLTGMYRYKYK+M QIR+CKDLKH+IY RFN+G VGKGPGCGFWAP+W
Sbjct  181  ADGLQYIFNHVGQLTGMYRYKYKVMRQIRACKDLKHVIYSRFNTGEVGKGPGCGFWAPSW  240

Query  651  RVWLFFMRGIIPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLELRASVMADLM  710
            RVW+FF+RGIIPLLERWLGNLL+RQFEGR SK VAKT+TKQRVES++DLELRASVM D++
Sbjct  241  RVWIFFLRGIIPLLERWLGNLLARQFEGRKSKDVAKTITKQRVESYYDLELRASVMHDIL  300

Query  711  DMMPEGIKQNKVNTVLQHLSEAWRCWKSNIPWKVPGLPAPIENIILRYVKSKADWWISVA  770
            DMMPEG+KQNK  T+LQHLSEAWRCWK+NIPWKVPGLP PIENIILRYVK+KADWW SVA
Sbjct  301  DMMPEGVKQNKARTILQHLSEAWRCWKANIPWKVPGLPEPIENIILRYVKAKADWWTSVA  360

Query  771  HYNRERIRRGATVDKTVAKKNLGRLTRLWLKAEQERQHNYLK  812
            HYNRERI+RGATVDKTVAKKNLGRLTRLWLKAEQERQ NYLK
Sbjct  361  HYNRERIKRGATVDKTVAKKNLGRLTRLWLKAEQERQANYLK  402


>CDD:462361 pfam08082, PRO8NT, PRO8NT (NUC069), PrP8 N-terminal domain.  
The PRO8NT domain is found at the N-terminus of pre-mRNA splicing 
factors of PRO8 family. The NLS or nuclear localization 
signal for these spliceosome proteins begins at the start 
and runs for 60 residues. N-terminal to this domain is a highly 
variable proline-rich region.
Length=152

 Score = 330 bits (847),  Expect = 6e-105, Method: Composition-based stats.
 Identities = 118/152 (78%), Positives = 133/152 (88%), Gaps = 0/152 (0%)

Query  67   KADMPPEHLRKIVRDIGDVSQKKFSNEKRSYLGALKFMPHAVLKLLENMPMPWESAREVK  126
            K DMPPEHLRKI++D GD+S KKF ++KRSYLGALK+MPHAVLKLLENMPMPWE  REVK
Sbjct  1    KEDMPPEHLRKIIKDHGDMSSKKFRSDKRSYLGALKYMPHAVLKLLENMPMPWEEVREVK  60

Query  127  VLYHVNGCLTLVNETPRVIEPVFHAQWATMWVCMRREKCDRRHFKRMRFPPFDDEEPPLS  186
            VLYHV G +T VNE PRVIEPV+ AQW+TMW+ MRREK DRRHFKRMRFPPFDDEEPPL 
Sbjct  61   VLYHVTGAITFVNEIPRVIEPVYIAQWSTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD  120

Query  187  WSENIEDVEPLEPVQMELDESEDAPVYEWFYD  218
            +++NI DVEPLE +QMELDE EDA V +WFYD
Sbjct  121  YADNILDVEPLEAIQMELDEEEDAAVIDWFYD  152


>CDD:402297 pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 of PrP8.  
The essential spliceosomal protein Prp8 interacts with U5 and 
U6 snRNAs and with specific pre-mRNA sequences that participate 
in catalysis. This close association with crucial RNA 
sequences, together with extensive genetic evidence, suggests 
that Prp8 could directly affect the function of the catalytic 
core, perhaps acting as a splicing cofactor.
Length=134

 Score = 278 bits (714),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 105/134 (78%), Positives = 117/134 (87%), Gaps = 0/134 (0%)

Query  1226  KDSVWSLVDNATKERTAHAFLQVTEEDIQKFNNRIRQILMSSGSTTFTKIANKWNTALIA  1285
              + VW L++ +TKERTA AFLQV+EE I  F NRIRQILMSSGSTTFTKIANKWNTALIA
Sbjct  1     NEGVWDLINESTKERTAKAFLQVSEESINNFRNRIRQILMSSGSTTFTKIANKWNTALIA  60

Query  1286  LFTYYREAAVSTVNLLDTIVKCETKIQTRVKIGLNSKMPSRFPPAVFYTPKELGGLGMIS  1345
             LFTY+REA VST  LLD +VKCET++Q RVK+GLNSKMPSRFPPAVFYTPKELGGLGM+S
Sbjct  61    LFTYFREAIVSTEELLDILVKCETRVQNRVKLGLNSKMPSRFPPAVFYTPKELGGLGMLS  120

Query  1346  GSHILIPASDKRWS  1359
               H+LIPASD RWS
Sbjct  121   AGHVLIPASDLRWS  134


>CDD:463163 pfam10598, RRM_4, RNA recognition motif of the spliceosomal PrP8. 
 The large RNA-protein complex of the spliceosome catalyzes 
pre-mRNA splicing. One of the most conserved core proteins 
is PrP8 which occupies a central position in the catalytic 
core of the spliceosome, and has been implicated in several 
crucial molecular rearrangements that occur there, and has 
recently come under the spotlight for its role in the inherited 
human disease, Retinitis Pigmentosa. The RNA-recognition 
motif of PrP8 is highly conserved and provides a possible 
RNA binding centre for the 5-prime SS, BP, or 3-prime SS of 
pre-mRNA which are known to contact with Prp8. The most conserved 
regions of an RRM are defined as the RNP1 and RNP2 sequences. 
Recognition of RNA targets can also be modulated by 
a number of other factors, most notably the two loops beta1-alpha1, 
beta2-beta3 and the amino acid residues C-terminal 
to the RNP2 domain.
Length=92

 Score = 162 bits (411),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 76/92 (83%), Positives = 87/92 (95%), Gaps = 0/92 (0%)

Query  1002  EKIDLTLLNRLLRLIMDHNLADYITSKNNVQLSYKDMNHTNSYGLIRGLQFSGFVFQYYG  1061
             EKIDLTLLNRLLRLIMDHNLADYIT+KNNV L++KDM+H NSYGLIRGLQFS FV+QYYG
Sbjct  1     EKIDLTLLNRLLRLIMDHNLADYITAKNNVVLTFKDMSHVNSYGLIRGLQFSSFVYQYYG  60

Query  1062  LMIDLLLLGLQRASEMAGPPQSPNDFLQFRDR  1093
             L++DLL+LGLQRASE+AGPPQ PN+FLQF+D 
Sbjct  61    LVLDLLILGLQRASEIAGPPQMPNEFLQFKDI  92


>CDD:431383 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain of PrP8. 
 This domain incorporates the interacting site for the U6-snRNA 
as part of the U4/U6.U5 tri-snRNPs complex of the spliceosome, 
and is the prime candidate for the role of cofactor 
for the spliceosome's RNA core. The essential spliceosomal protein 
Prp8 interacts with U5 and U6 snRNAs and with specific 
pre-mRNA sequences that participate in catalysis. This close 
association with crucial RNA sequences, together with extensive 
genetic evidence, suggests that Prp8 could directly affect 
the function of the catalytic core, perhaps acting as 
a splicing cofactor.
Length=159

 Score = 129 bits (327),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 53/65 (82%), Positives = 58/65 (89%), Gaps = 0/65 (0%)

Query  1458  FKQYQLMKSNPFWWTSQRHDGKLWNLNAYRTDVIQALGGVETILEHTLFKATAFPSWEGL  1517
             FK+YQL+K NPFWWT  RHDGKLWNL  YRTD+IQALGGVE ILEHTLFKAT FPSWEGL
Sbjct  1     FKKYQLLKYNPFWWTHARHDGKLWNLERYRTDIIQALGGVEGILEHTLFKATGFPSWEGL  60

Query  1518  FWERA  1522
             FW++A
Sbjct  61    FWDKA  65



Lambda      K        H        a         alpha
   0.319    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2912819712


Query= TCONS_00010557

Length=2346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400431 pfam08083, PROCN, PROCN (NUC071) domain. The PROCN dom...  875     0.0   
CDD:462361 pfam08082, PRO8NT, PRO8NT (NUC069), PrP8 N-terminal do...  330     6e-105
CDD:402297 pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 of ...  278     2e-87 
CDD:463163 pfam10598, RRM_4, RNA recognition motif of the spliceo...  162     5e-47 
CDD:431383 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain o...  129     8e-35 


>CDD:400431 pfam08083, PROCN, PROCN (NUC071) domain.  The PROCN domain is 
the central domain in pre-mRNA splicing factors of PRO8 family.
Length=402

 Score = 875 bits (2263),  Expect = 0.0, Method: Composition-based stats.
 Identities = 331/402 (82%), Positives = 366/402 (91%), Gaps = 0/402 (0%)

Query  411  TPDTASAIALWWAPHPFNKRSGKMVRAQDVPLVKQWYLEHCPQGQPVKVRVSYQKLLKTY  470
              +T   I+L+WAP+PFN+RSG+  RAQDVPL+K WY EH P   PVKVRVSYQKLLK Y
Sbjct  1    NENTKDGISLYWAPYPFNRRSGRTKRAQDVPLIKHWYREHPPSNYPVKVRVSYQKLLKNY  60

Query  471  VLNELHKKKPKAQNKQNLLRTLKSTKFFQQTTIDWVEAGLQVCRQGFNMLNLLIHRKNLT  530
            VLNELH +K K   K+NLL++LK+TKFFQQTTIDWVEAGLQVCRQG NMLNLLIHRK LT
Sbjct  61   VLNELHHRKQKKHKKKNLLKSLKNTKFFQQTTIDWVEAGLQVCRQGHNMLNLLIHRKGLT  120

Query  531  YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLMREILRLTKLIVDAQVQYRLGNIDAFQL  590
            YLHLDYNFNLKP KTLTTKERKKSRFGNAFHL+RE+LRLTKL+VDA VQYRLGNIDA+QL
Sbjct  121  YLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLIRELLRLTKLLVDAHVQYRLGNIDAYQL  180

Query  591  ADGILYAFNHVGQLTGMYRYKYKLMHQIRSCKDLKHLIYYRFNSGPVGKGPGCGFWAPAW  650
            ADG+ Y FNHVGQLTGMYRYKYK+M QIR+CKDLKH+IY RFN+G VGKGPGCGFWAP+W
Sbjct  181  ADGLQYIFNHVGQLTGMYRYKYKVMRQIRACKDLKHVIYSRFNTGEVGKGPGCGFWAPSW  240

Query  651  RVWLFFMRGIIPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLELRASVMADLM  710
            RVW+FF+RGIIPLLERWLGNLL+RQFEGR SK VAKT+TKQRVES++DLELRASVM D++
Sbjct  241  RVWIFFLRGIIPLLERWLGNLLARQFEGRKSKDVAKTITKQRVESYYDLELRASVMHDIL  300

Query  711  DMMPEGIKQNKVNTVLQHLSEAWRCWKSNIPWKVPGLPAPIENIILRYVKSKADWWISVA  770
            DMMPEG+KQNK  T+LQHLSEAWRCWK+NIPWKVPGLP PIENIILRYVK+KADWW SVA
Sbjct  301  DMMPEGVKQNKARTILQHLSEAWRCWKANIPWKVPGLPEPIENIILRYVKAKADWWTSVA  360

Query  771  HYNRERIRRGATVDKTVAKKNLGRLTRLWLKAEQERQHNYLK  812
            HYNRERI+RGATVDKTVAKKNLGRLTRLWLKAEQERQ NYLK
Sbjct  361  HYNRERIKRGATVDKTVAKKNLGRLTRLWLKAEQERQANYLK  402


>CDD:462361 pfam08082, PRO8NT, PRO8NT (NUC069), PrP8 N-terminal domain.  
The PRO8NT domain is found at the N-terminus of pre-mRNA splicing 
factors of PRO8 family. The NLS or nuclear localization 
signal for these spliceosome proteins begins at the start 
and runs for 60 residues. N-terminal to this domain is a highly 
variable proline-rich region.
Length=152

 Score = 330 bits (847),  Expect = 6e-105, Method: Composition-based stats.
 Identities = 118/152 (78%), Positives = 133/152 (88%), Gaps = 0/152 (0%)

Query  67   KADMPPEHLRKIVRDIGDVSQKKFSNEKRSYLGALKFMPHAVLKLLENMPMPWESAREVK  126
            K DMPPEHLRKI++D GD+S KKF ++KRSYLGALK+MPHAVLKLLENMPMPWE  REVK
Sbjct  1    KEDMPPEHLRKIIKDHGDMSSKKFRSDKRSYLGALKYMPHAVLKLLENMPMPWEEVREVK  60

Query  127  VLYHVNGCLTLVNETPRVIEPVFHAQWATMWVCMRREKCDRRHFKRMRFPPFDDEEPPLS  186
            VLYHV G +T VNE PRVIEPV+ AQW+TMW+ MRREK DRRHFKRMRFPPFDDEEPPL 
Sbjct  61   VLYHVTGAITFVNEIPRVIEPVYIAQWSTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD  120

Query  187  WSENIEDVEPLEPVQMELDESEDAPVYEWFYD  218
            +++NI DVEPLE +QMELDE EDA V +WFYD
Sbjct  121  YADNILDVEPLEAIQMELDEEEDAAVIDWFYD  152


>CDD:402297 pfam10597, U5_2-snRNA_bdg, U5-snRNA binding site 2 of PrP8.  
The essential spliceosomal protein Prp8 interacts with U5 and 
U6 snRNAs and with specific pre-mRNA sequences that participate 
in catalysis. This close association with crucial RNA 
sequences, together with extensive genetic evidence, suggests 
that Prp8 could directly affect the function of the catalytic 
core, perhaps acting as a splicing cofactor.
Length=134

 Score = 278 bits (714),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 105/134 (78%), Positives = 117/134 (87%), Gaps = 0/134 (0%)

Query  1226  KDSVWSLVDNATKERTAHAFLQVTEEDIQKFNNRIRQILMSSGSTTFTKIANKWNTALIA  1285
              + VW L++ +TKERTA AFLQV+EE I  F NRIRQILMSSGSTTFTKIANKWNTALIA
Sbjct  1     NEGVWDLINESTKERTAKAFLQVSEESINNFRNRIRQILMSSGSTTFTKIANKWNTALIA  60

Query  1286  LFTYYREAAVSTVNLLDTIVKCETKIQTRVKIGLNSKMPSRFPPAVFYTPKELGGLGMIS  1345
             LFTY+REA VST  LLD +VKCET++Q RVK+GLNSKMPSRFPPAVFYTPKELGGLGM+S
Sbjct  61    LFTYFREAIVSTEELLDILVKCETRVQNRVKLGLNSKMPSRFPPAVFYTPKELGGLGMLS  120

Query  1346  GSHILIPASDKRWS  1359
               H+LIPASD RWS
Sbjct  121   AGHVLIPASDLRWS  134


>CDD:463163 pfam10598, RRM_4, RNA recognition motif of the spliceosomal PrP8. 
 The large RNA-protein complex of the spliceosome catalyzes 
pre-mRNA splicing. One of the most conserved core proteins 
is PrP8 which occupies a central position in the catalytic 
core of the spliceosome, and has been implicated in several 
crucial molecular rearrangements that occur there, and has 
recently come under the spotlight for its role in the inherited 
human disease, Retinitis Pigmentosa. The RNA-recognition 
motif of PrP8 is highly conserved and provides a possible 
RNA binding centre for the 5-prime SS, BP, or 3-prime SS of 
pre-mRNA which are known to contact with Prp8. The most conserved 
regions of an RRM are defined as the RNP1 and RNP2 sequences. 
Recognition of RNA targets can also be modulated by 
a number of other factors, most notably the two loops beta1-alpha1, 
beta2-beta3 and the amino acid residues C-terminal 
to the RNP2 domain.
Length=92

 Score = 162 bits (411),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 76/92 (83%), Positives = 87/92 (95%), Gaps = 0/92 (0%)

Query  1002  EKIDLTLLNRLLRLIMDHNLADYITSKNNVQLSYKDMNHTNSYGLIRGLQFSGFVFQYYG  1061
             EKIDLTLLNRLLRLIMDHNLADYIT+KNNV L++KDM+H NSYGLIRGLQFS FV+QYYG
Sbjct  1     EKIDLTLLNRLLRLIMDHNLADYITAKNNVVLTFKDMSHVNSYGLIRGLQFSSFVYQYYG  60

Query  1062  LMIDLLLLGLQRASEMAGPPQSPNDFLQFRDR  1093
             L++DLL+LGLQRASE+AGPPQ PN+FLQF+D 
Sbjct  61    LVLDLLILGLQRASEIAGPPQMPNEFLQFKDI  92


>CDD:431383 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain of PrP8. 
 This domain incorporates the interacting site for the U6-snRNA 
as part of the U4/U6.U5 tri-snRNPs complex of the spliceosome, 
and is the prime candidate for the role of cofactor 
for the spliceosome's RNA core. The essential spliceosomal protein 
Prp8 interacts with U5 and U6 snRNAs and with specific 
pre-mRNA sequences that participate in catalysis. This close 
association with crucial RNA sequences, together with extensive 
genetic evidence, suggests that Prp8 could directly affect 
the function of the catalytic core, perhaps acting as 
a splicing cofactor.
Length=159

 Score = 129 bits (327),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 53/65 (82%), Positives = 58/65 (89%), Gaps = 0/65 (0%)

Query  1458  FKQYQLMKSNPFWWTSQRHDGKLWNLNAYRTDVIQALGGVETILEHTLFKATAFPSWEGL  1517
             FK+YQL+K NPFWWT  RHDGKLWNL  YRTD+IQALGGVE ILEHTLFKAT FPSWEGL
Sbjct  1     FKKYQLLKYNPFWWTHARHDGKLWNLERYRTDIIQALGGVEGILEHTLFKATGFPSWEGL  60

Query  1518  FWERA  1522
             FW++A
Sbjct  61    FWDKA  65



Lambda      K        H        a         alpha
   0.319    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2912819712


Query= TCONS_00010559

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426119 pfam01199, Ribosomal_L34e, Ribosomal protein L34e          158     2e-51


>CDD:426119 pfam01199, Ribosomal_L34e, Ribosomal protein L34e.  
Length=94

 Score = 158 bits (403),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 58/83 (70%), Positives = 68/83 (82%), Gaps = 0/83 (0%)

Query  88   RYNTRSNKVRIIKTPGGELRYLHIKKKGTAPKCGDCGIKLPGIPALRPREYSQISRPKKT  147
             YNTRSNK R++KTPGG L Y ++KKKG  PKCGDCG +L GIPALRP E  ++S+ KKT
Sbjct  12   SYNTRSNKRRVVKTPGGRLVYQYVKKKGKGPKCGDCGKRLNGIPALRPAELRRLSKSKKT  71

Query  148  VSRAYGGSRCAGCVKDRIVRAFL  170
            VSRAYGGS CA CV++RIVRAFL
Sbjct  72   VSRAYGGSLCAKCVRERIVRAFL  94



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00010560

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.154    0.492    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00010561

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00017212

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00017213

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00010562

Length=1131


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1443710092


Query= TCONS_00017214

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401611 pfam09732, CactinC_cactus, Cactus-binding C-terminus o...  236     1e-79
CDD:463049 pfam10312, Cactin_mid, Conserved mid region of cactin....  126     9e-36


>CDD:401611 pfam09732, CactinC_cactus, Cactus-binding C-terminus of cactin 
protein.  CactinC_cactus is the C-terminal 200 residues of 
the cactin protein which are necessary for the association 
of cactin with IkappaB-cactus as one of the intracellular members 
of the Rel complex. The Rel (NF-kappaB) pathway is conserved 
in invertebrates and vertebrates. In mammals, it controls 
the activities of the immune and inflammatory response 
genes as well as viral genes, and is critical for cell growth 
and survival. In Drosophila, the Rel pathway functions in 
the innate cellular and humoral immune response, in muscle development, 
and in the establishment of dorsal-ventral polarity 
in the early embryo. Most members of the family also have 
a Cactin_mid domain pfam10312 further upstream.
Length=125

 Score = 236 bits (605),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 92/122 (75%), Positives = 100/122 (82%), Gaps = 13/122 (11%)

Query  183  WASKYRPRKPRYFNRVQMGYEWNKYNQTHYDHDNPPPKVVQGYKFNIFYPDLIDKTKAPT  242
            W+ KYRPRKPRYFNRV+ GYEWNKYNQTHYD DNPPPKVVQGYKFNIFYPDLIDKTK PT
Sbjct  1    WSDKYRPRKPRYFNRVKTGYEWNKYNQTHYDSDNPPPKVVQGYKFNIFYPDLIDKTKTPT  60

Query  243  YRIEREHGRKRGQSFAAAGEEDTCLIRFMAGPPYEDIAFRIVDKEWDYSAKRERGFKSTF  302
            Y+IE++             E DTCLIRF AGPPYEDIAFRIV+KEWDYS K  RGFKS+F
Sbjct  61   YKIEKD-----------PNEPDTCLIRFHAGPPYEDIAFRIVNKEWDYSHK--RGFKSSF  107

Query  303  DK  304
            D+
Sbjct  108  DR  109


>CDD:463049 pfam10312, Cactin_mid, Conserved mid region of cactin.  This 
is the conserved middle region of a family of proteins referred 
to as cactins. The region contains two of three predicted 
coiled-coil domains. Most members of this family have a CactinC_cactus 
pfam09732 domain at the C-terminal end. Upstream 
of Mid_cactin in Drosophila members are a serine-rich region, 
some non-typical RD motifs and three predicted bipartite 
nuclear localization signals, none of which are well-conserved. 
Cactin associates with IkappaB-cactus as one of the intracellular 
members of the Rel (NF-kappaB) pathway which is conserved 
in invertebrates and vertebrates. In mammals, this 
pathway controls the activities of the immune and inflammatory 
response genes as well as viral genes, and is critical for 
cell growth and survival. In Drosophila, the Rel pathway functions 
in the innate cellular and humoral immune response, 
in muscle development, and in the establishment of dorsal-ventral 
polarity in the early embryo.
Length=186

 Score = 126 bits (318),  Expect = 9e-36, Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 59/83 (71%), Gaps = 3/83 (4%)

Query  1    MKVICRDR---QKATAPEGRALSSVAADINRLLTPKTYEQLETLEVQVRKKLDSNEPIDT  57
            M V+C D     K +A EG   SSV ADI+++L  KTYE+LE LE Q++ KL S EPID 
Sbjct  104  MLVVCEDELEKLKKSAREGGIHSSVEADIDKILKGKTYEELEALEKQIKAKLRSGEPIDV  163

Query  58   DYWEELLRSLTVWKARAKVKKVH  80
            DYWE LL+ L V+KA+A++++VH
Sbjct  164  DYWESLLKKLKVYKAKARLREVH  186



Lambda      K        H        a         alpha
   0.315    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00010563

Length=1131


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1443710092


Query= TCONS_00010564

Length=1131


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0794    0.140     1.90     42.6     43.6 

Effective search space used: 1443710092


Query= TCONS_00017217

Length=483


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593513872


Query= TCONS_00010565

Length=748
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  151     3e-43
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  137     7e-37


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 151 bits (384),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 58/151 (38%), Positives = 81/151 (54%), Gaps = 2/151 (1%)

Query  462  LNGLTFHCEPGTSTALVGESGGGKSTVFRLLFRFYNARNGHIRIDGHDVEDITIDSLRRH  521
            L  ++    PG   ALVG +G GKST+ +L+    +   G I +DG D+ D    SLR+ 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  522  IGVVPQDTVLFNETLMY-NLKYANQNATDEEVYEACRAASIHDKIMSFPDGYNTKVGERG  580
            IG V QD  LF    +  NL+         +  +  RA    +K +   D  +  VGER 
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEK-LGLGDLADRPVGERP  119

Query  581  LRLSGGEKQRVAIARTILKNPRIILLDEATA  611
              LSGG++QRVAIAR +L  P+++LLDE TA
Sbjct  120  GTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 137 bits (348),  Expect = 7e-37, Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 112/278 (40%), Gaps = 6/278 (2%)

Query  125  VVICFVLIVLQCVVNVLVPYQVGVITNILSKTDGDFRVPWFEICLY-ILYRWLQGNQGLI  183
            +++  +L +L   ++   P  +G I ++L     D       + +Y +    L   Q ++
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLL---PDGDPETQALNVYSLALLLLGLAQFIL  57

Query  184  GSLRSSLWIPVSQYSYMELSTAAFEHVHGLSLDFHLGKKTGEVLSALSKG-SSINTFLEQ  242
              L+S L     +     L    F+ +    + F      GE+LS L+   S I   L +
Sbjct  58   SFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  243  VTFQVVPMLVDLCVAIGYLLIALDAYYALVVTIVTFCYLYVTVRMAQWRAEIRRQMVNAS  302
                +   L  +   I  +         LV+  V   Y+ V+   A+   ++ R+   A 
Sbjct  118  KLGLLFQSLATIVGGIIVMFY-YGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAV  176

Query  303  RQEDAVKNDSMVSYETVKYFNAEEYEFNRYRGAVSDYQKAEYHVLFSLTLMNTSQNTVFM  362
             +  +V  +S+    TVK F  EEYE  +Y  A+ +  KA      +  L       +  
Sbjct  177  AKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGY  236

Query  363  LGLLIACFIAAYQVSLGQRDVGQFVSLLTYMAQLQGPL  400
            L   +A +  AY V  G+  VG  V+ L+  AQL GPL
Sbjct  237  LSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.321    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 951669408


Query= TCONS_00017218

Length=938
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  151     5e-43
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  136     4e-36


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 151 bits (384),  Expect = 5e-43, Method: Composition-based stats.
 Identities = 58/151 (38%), Positives = 81/151 (54%), Gaps = 2/151 (1%)

Query  652  LNGLTFHCEPGTSTALVGESGGGKSTVFRLLFRFYNARNGHIRIDGHDVEDITIDSLRRH  711
            L  ++    PG   ALVG +G GKST+ +L+    +   G I +DG D+ D    SLR+ 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  712  IGVVPQDTVLFNETLMY-NLKYANQNATDEEVYEACRAASIHDKIMSFPDGYNTKVGERG  770
            IG V QD  LF    +  NL+         +  +  RA    +K +   D  +  VGER 
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEK-LGLGDLADRPVGERP  119

Query  771  LRLSGGEKQRVAIARTILKNPRIILLDEATA  801
              LSGG++QRVAIAR +L  P+++LLDE TA
Sbjct  120  GTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 136 bits (344),  Expect = 4e-36, Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 112/278 (40%), Gaps = 6/278 (2%)

Query  315  VVICFVLIVLQCVVNVLVPYQVGVITNILSKTDGDFRVPWFEICLY-ILYRWLQGNQGLI  373
            +++  +L +L   ++   P  +G I ++L     D       + +Y +    L   Q ++
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLL---PDGDPETQALNVYSLALLLLGLAQFIL  57

Query  374  GSLRSSLWIPVSQYSYMELSTAAFEHVHGLSLDFHLGKKTGEVLSALSKG-SSINTFLEQ  432
              L+S L     +     L    F+ +    + F      GE+LS L+   S I   L +
Sbjct  58   SFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  433  VTFQVVPMLVDLCVAIGYLLIALDAYYALVVTIVTFCYLYVTVRMAQWRAEIRRQMVNAS  492
                +   L  +   I  +         LV+  V   Y+ V+   A+   ++ R+   A 
Sbjct  118  KLGLLFQSLATIVGGIIVMFY-YGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAV  176

Query  493  RQEDAVKNDSMVSYETVKYFNAEEYEFNRYRGAVSDYQKAEYHVLFSLTLMNTSQNTVFM  552
             +  +V  +S+    TVK F  EEYE  +Y  A+ +  KA      +  L       +  
Sbjct  177  AKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGY  236

Query  553  LGLLIACFIAAYQVSLGQRDVGQFVSLLTYMAQLQGPL  590
            L   +A +  AY V  G+  VG  V+ L+  AQL GPL
Sbjct  237  LSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.321    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1210138302


Query= TCONS_00010566

Length=938
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  151     5e-43
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  136     4e-36


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 151 bits (384),  Expect = 5e-43, Method: Composition-based stats.
 Identities = 58/151 (38%), Positives = 81/151 (54%), Gaps = 2/151 (1%)

Query  652  LNGLTFHCEPGTSTALVGESGGGKSTVFRLLFRFYNARNGHIRIDGHDVEDITIDSLRRH  711
            L  ++    PG   ALVG +G GKST+ +L+    +   G I +DG D+ D    SLR+ 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  712  IGVVPQDTVLFNETLMY-NLKYANQNATDEEVYEACRAASIHDKIMSFPDGYNTKVGERG  770
            IG V QD  LF    +  NL+         +  +  RA    +K +   D  +  VGER 
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEK-LGLGDLADRPVGERP  119

Query  771  LRLSGGEKQRVAIARTILKNPRIILLDEATA  801
              LSGG++QRVAIAR +L  P+++LLDE TA
Sbjct  120  GTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 136 bits (344),  Expect = 4e-36, Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 112/278 (40%), Gaps = 6/278 (2%)

Query  315  VVICFVLIVLQCVVNVLVPYQVGVITNILSKTDGDFRVPWFEICLY-ILYRWLQGNQGLI  373
            +++  +L +L   ++   P  +G I ++L     D       + +Y +    L   Q ++
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLL---PDGDPETQALNVYSLALLLLGLAQFIL  57

Query  374  GSLRSSLWIPVSQYSYMELSTAAFEHVHGLSLDFHLGKKTGEVLSALSKG-SSINTFLEQ  432
              L+S L     +     L    F+ +    + F      GE+LS L+   S I   L +
Sbjct  58   SFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  433  VTFQVVPMLVDLCVAIGYLLIALDAYYALVVTIVTFCYLYVTVRMAQWRAEIRRQMVNAS  492
                +   L  +   I  +         LV+  V   Y+ V+   A+   ++ R+   A 
Sbjct  118  KLGLLFQSLATIVGGIIVMFY-YGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAV  176

Query  493  RQEDAVKNDSMVSYETVKYFNAEEYEFNRYRGAVSDYQKAEYHVLFSLTLMNTSQNTVFM  552
             +  +V  +S+    TVK F  EEYE  +Y  A+ +  KA      +  L       +  
Sbjct  177  AKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGY  236

Query  553  LGLLIACFIAAYQVSLGQRDVGQFVSLLTYMAQLQGPL  590
            L   +A +  AY V  G+  VG  V+ L+  AQL GPL
Sbjct  237  LSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.321    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1210138302


Query= TCONS_00010568

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  150     3e-44
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  68.8    1e-13


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 150 bits (380),  Expect = 3e-44, Method: Composition-based stats.
 Identities = 58/151 (38%), Positives = 81/151 (54%), Gaps = 2/151 (1%)

Query  150  LNGLTFHCEPGTSTALVGESGGGKSTVFRLLFRFYNARNGHIRIDGHDVEDITIDSLRRH  209
            L  ++    PG   ALVG +G GKST+ +L+    +   G I +DG D+ D    SLR+ 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  210  IGVVPQDTVLFNETLMY-NLKYANQNATDEEVYEACRAASIHDKIMSFPDGYNTKVGERG  268
            IG V QD  LF    +  NL+         +  +  RA    +K +   D  +  VGER 
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEK-LGLGDLADRPVGERP  119

Query  269  LRLSGGEKQRVAIARTILKNPRIILLDEATA  299
              LSGG++QRVAIAR +L  P+++LLDE TA
Sbjct  120  GTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 68.8 bits (169),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 29/84 (35%), Positives = 39/84 (46%), Gaps = 0/84 (0%)

Query  5    ETVKYFNAEEYEFNRYRGAVSDYQKAEYHVLFSLTLMNTSQNTVFMLGLLIACFIAAYQV  64
             TVK F  EEYE  +Y  A+ +  KA      +  L       +  L   +A +  AY V
Sbjct  191  RTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLV  250

Query  65   SLGQRDVGQFVSLLTYMAQLQGPL  88
              G+  VG  V+ L+  AQL GPL
Sbjct  251  ISGELSVGDLVAFLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.319    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00010569

Length=938
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  151     5e-43
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  136     4e-36


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 151 bits (384),  Expect = 5e-43, Method: Composition-based stats.
 Identities = 58/151 (38%), Positives = 81/151 (54%), Gaps = 2/151 (1%)

Query  652  LNGLTFHCEPGTSTALVGESGGGKSTVFRLLFRFYNARNGHIRIDGHDVEDITIDSLRRH  711
            L  ++    PG   ALVG +G GKST+ +L+    +   G I +DG D+ D    SLR+ 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  712  IGVVPQDTVLFNETLMY-NLKYANQNATDEEVYEACRAASIHDKIMSFPDGYNTKVGERG  770
            IG V QD  LF    +  NL+         +  +  RA    +K +   D  +  VGER 
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEK-LGLGDLADRPVGERP  119

Query  771  LRLSGGEKQRVAIARTILKNPRIILLDEATA  801
              LSGG++QRVAIAR +L  P+++LLDE TA
Sbjct  120  GTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 136 bits (344),  Expect = 4e-36, Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 112/278 (40%), Gaps = 6/278 (2%)

Query  315  VVICFVLIVLQCVVNVLVPYQVGVITNILSKTDGDFRVPWFEICLY-ILYRWLQGNQGLI  373
            +++  +L +L   ++   P  +G I ++L     D       + +Y +    L   Q ++
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLL---PDGDPETQALNVYSLALLLLGLAQFIL  57

Query  374  GSLRSSLWIPVSQYSYMELSTAAFEHVHGLSLDFHLGKKTGEVLSALSKG-SSINTFLEQ  432
              L+S L     +     L    F+ +    + F      GE+LS L+   S I   L +
Sbjct  58   SFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  433  VTFQVVPMLVDLCVAIGYLLIALDAYYALVVTIVTFCYLYVTVRMAQWRAEIRRQMVNAS  492
                +   L  +   I  +         LV+  V   Y+ V+   A+   ++ R+   A 
Sbjct  118  KLGLLFQSLATIVGGIIVMFY-YGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAV  176

Query  493  RQEDAVKNDSMVSYETVKYFNAEEYEFNRYRGAVSDYQKAEYHVLFSLTLMNTSQNTVFM  552
             +  +V  +S+    TVK F  EEYE  +Y  A+ +  KA      +  L       +  
Sbjct  177  AKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGY  236

Query  553  LGLLIACFIAAYQVSLGQRDVGQFVSLLTYMAQLQGPL  590
            L   +A +  AY V  G+  VG  V+ L+  AQL GPL
Sbjct  237  LSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.321    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1210138302


Query= TCONS_00010571

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395188 pfam00245, Alk_phosphatase, Alkaline phosphatase           357     5e-119


>CDD:395188 pfam00245, Alk_phosphatase, Alkaline phosphatase.  
Length=418

 Score = 357 bits (919),  Expect = 5e-119, Method: Composition-based stats.
 Identities = 152/463 (33%), Positives = 221/463 (48%), Gaps = 63/463 (14%)

Query  93   KRNLIFMVSDGMGPTSLTMTRSYRQFVEGLPIDDILVLDGH--IIGTSRTRSSSSLVTDS  150
             +N+I  + DGMG +++T  R  +    G P  +  +      ++G S+T +    VTDS
Sbjct  1    AKNVIIFLGDGMGVSTVTAARILKGQKGGKPGPETPLAFDRFPLVGLSKTYNVDKQVTDS  60

Query  151  AAGATAFSCGFKSYNGAISVLPDHSPCGTVLEAASLAGYKTGLVVTTRITDATPACFASH  210
            AA ATA+ CG K+YNGAI V        +VLEAA  AG  TGLV TTRI  ATPA   +H
Sbjct  61   AATATAYLCGVKTYNGAIGVDAAGKEVKSVLEAAKAAGKSTGLVTTTRIQHATPAGTYAH  120

Query  211  VNLRQYEDRIAE---------QEIGEHPLGR-VVDLIFGGGRCHFLPNS--TEGSCRADD  258
            V  R++    A          ++I E  +    +D+I GGGR +F P    T+G+ R D 
Sbjct  121  VVSRKWYSDAAMPASALQEGCKDIAEQLINNMKIDVILGGGRKYFFPPEYPTDGT-RKDG  179

Query  259  RDLVSVAKKRGFSYLDDRKGFDSLNGGSEAKLPLLGLFAEKDIPFEIDRRNQNDVYPSLE  318
            R+L+   K +G+ Y+ +RK     N  S +   LLGLFA+ D+P+EIDR       PSL+
Sbjct  180  RNLIEEWKHQGYQYVWNRKELLK-NKDSNSVTYLLGLFADGDMPYEIDR--DEATDPSLK  236

Query  319  EMARTALKILSDATADSEQGFFLMIEGSRIDHAGHGNDPAAQVHEVIAYDKAFAAVLDFL  378
            EM   A+++LS     + +GFFLM+EG RIDHA H ND    + E + +D+A    L+F 
Sbjct  237  EMTEVAIRLLS----KNPKGFFLMVEGGRIDHAHHDNDAYGALTETVDFDQAVKRALEFA  292

Query  379  GKDSTPGVVVSTSDHET----GGLAAARQLHTSYPEYKWLPGVLANASHSTEYIDNKLRE  434
             K+    +VV T+DH      GG        T+     W    L  A     +       
Sbjct  293  KKE-KDTLVVVTADHSHVFSFGGY-------TTRGTSIWGLAPLLAA-KRKPF-------  336

Query  435  FLSTETEKNKQQHYVRELLEKGLGITDATDEEIDSILDPNSPVSSQYQLADMISRRAQIG  494
                                   G      EEI+  + PN   + + +  DM   R+ + 
Sbjct  337  ------------------TLILYGNGPGYKEEING-VRPNVT-ADESKGNDMYRTRSAVP  376

Query  495  WSTHGHSGVDVNIYASSSKDAWPLVGNHENTEIGQFISDYLDL  537
            W++  H+G DV ++A     A  + G  E TEI   ++  L L
Sbjct  377  WTSETHTGEDVAVFAYGPH-AHLVHGLQEQTEIAHVMAKALCL  418



Lambda      K        H        a         alpha
   0.316    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00010573

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395188 pfam00245, Alk_phosphatase, Alkaline phosphatase           357     5e-119


>CDD:395188 pfam00245, Alk_phosphatase, Alkaline phosphatase.  
Length=418

 Score = 357 bits (919),  Expect = 5e-119, Method: Composition-based stats.
 Identities = 152/463 (33%), Positives = 221/463 (48%), Gaps = 63/463 (14%)

Query  93   KRNLIFMVSDGMGPTSLTMTRSYRQFVEGLPIDDILVLDGH--IIGTSRTRSSSSLVTDS  150
             +N+I  + DGMG +++T  R  +    G P  +  +      ++G S+T +    VTDS
Sbjct  1    AKNVIIFLGDGMGVSTVTAARILKGQKGGKPGPETPLAFDRFPLVGLSKTYNVDKQVTDS  60

Query  151  AAGATAFSCGFKSYNGAISVLPDHSPCGTVLEAASLAGYKTGLVVTTRITDATPACFASH  210
            AA ATA+ CG K+YNGAI V        +VLEAA  AG  TGLV TTRI  ATPA   +H
Sbjct  61   AATATAYLCGVKTYNGAIGVDAAGKEVKSVLEAAKAAGKSTGLVTTTRIQHATPAGTYAH  120

Query  211  VNLRQYEDRIAE---------QEIGEHPLGR-VVDLIFGGGRCHFLPNS--TEGSCRADD  258
            V  R++    A          ++I E  +    +D+I GGGR +F P    T+G+ R D 
Sbjct  121  VVSRKWYSDAAMPASALQEGCKDIAEQLINNMKIDVILGGGRKYFFPPEYPTDGT-RKDG  179

Query  259  RDLVSVAKKRGFSYLDDRKGFDSLNGGSEAKLPLLGLFAEKDIPFEIDRRNQNDVYPSLE  318
            R+L+   K +G+ Y+ +RK     N  S +   LLGLFA+ D+P+EIDR       PSL+
Sbjct  180  RNLIEEWKHQGYQYVWNRKELLK-NKDSNSVTYLLGLFADGDMPYEIDR--DEATDPSLK  236

Query  319  EMARTALKILSDATADSEQGFFLMIEGSRIDHAGHGNDPAAQVHEVIAYDKAFAAVLDFL  378
            EM   A+++LS     + +GFFLM+EG RIDHA H ND    + E + +D+A    L+F 
Sbjct  237  EMTEVAIRLLS----KNPKGFFLMVEGGRIDHAHHDNDAYGALTETVDFDQAVKRALEFA  292

Query  379  GKDSTPGVVVSTSDHET----GGLAAARQLHTSYPEYKWLPGVLANASHSTEYIDNKLRE  434
             K+    +VV T+DH      GG        T+     W    L  A     +       
Sbjct  293  KKE-KDTLVVVTADHSHVFSFGGY-------TTRGTSIWGLAPLLAA-KRKPF-------  336

Query  435  FLSTETEKNKQQHYVRELLEKGLGITDATDEEIDSILDPNSPVSSQYQLADMISRRAQIG  494
                                   G      EEI+  + PN   + + +  DM   R+ + 
Sbjct  337  ------------------TLILYGNGPGYKEEING-VRPNVT-ADESKGNDMYRTRSAVP  376

Query  495  WSTHGHSGVDVNIYASSSKDAWPLVGNHENTEIGQFISDYLDL  537
            W++  H+G DV ++A     A  + G  E TEI   ++  L L
Sbjct  377  WTSETHTGEDVAVFAYGPH-AHLVHGLQEQTEIAHVMAKALCL  418



Lambda      K        H        a         alpha
   0.316    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00017219

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395188 pfam00245, Alk_phosphatase, Alkaline phosphatase           357     5e-119


>CDD:395188 pfam00245, Alk_phosphatase, Alkaline phosphatase.  
Length=418

 Score = 357 bits (919),  Expect = 5e-119, Method: Composition-based stats.
 Identities = 152/463 (33%), Positives = 221/463 (48%), Gaps = 63/463 (14%)

Query  93   KRNLIFMVSDGMGPTSLTMTRSYRQFVEGLPIDDILVLDGH--IIGTSRTRSSSSLVTDS  150
             +N+I  + DGMG +++T  R  +    G P  +  +      ++G S+T +    VTDS
Sbjct  1    AKNVIIFLGDGMGVSTVTAARILKGQKGGKPGPETPLAFDRFPLVGLSKTYNVDKQVTDS  60

Query  151  AAGATAFSCGFKSYNGAISVLPDHSPCGTVLEAASLAGYKTGLVVTTRITDATPACFASH  210
            AA ATA+ CG K+YNGAI V        +VLEAA  AG  TGLV TTRI  ATPA   +H
Sbjct  61   AATATAYLCGVKTYNGAIGVDAAGKEVKSVLEAAKAAGKSTGLVTTTRIQHATPAGTYAH  120

Query  211  VNLRQYEDRIAE---------QEIGEHPLGR-VVDLIFGGGRCHFLPNS--TEGSCRADD  258
            V  R++    A          ++I E  +    +D+I GGGR +F P    T+G+ R D 
Sbjct  121  VVSRKWYSDAAMPASALQEGCKDIAEQLINNMKIDVILGGGRKYFFPPEYPTDGT-RKDG  179

Query  259  RDLVSVAKKRGFSYLDDRKGFDSLNGGSEAKLPLLGLFAEKDIPFEIDRRNQNDVYPSLE  318
            R+L+   K +G+ Y+ +RK     N  S +   LLGLFA+ D+P+EIDR       PSL+
Sbjct  180  RNLIEEWKHQGYQYVWNRKELLK-NKDSNSVTYLLGLFADGDMPYEIDR--DEATDPSLK  236

Query  319  EMARTALKILSDATADSEQGFFLMIEGSRIDHAGHGNDPAAQVHEVIAYDKAFAAVLDFL  378
            EM   A+++LS     + +GFFLM+EG RIDHA H ND    + E + +D+A    L+F 
Sbjct  237  EMTEVAIRLLS----KNPKGFFLMVEGGRIDHAHHDNDAYGALTETVDFDQAVKRALEFA  292

Query  379  GKDSTPGVVVSTSDHET----GGLAAARQLHTSYPEYKWLPGVLANASHSTEYIDNKLRE  434
             K+    +VV T+DH      GG        T+     W    L  A     +       
Sbjct  293  KKE-KDTLVVVTADHSHVFSFGGY-------TTRGTSIWGLAPLLAA-KRKPF-------  336

Query  435  FLSTETEKNKQQHYVRELLEKGLGITDATDEEIDSILDPNSPVSSQYQLADMISRRAQIG  494
                                   G      EEI+  + PN   + + +  DM   R+ + 
Sbjct  337  ------------------TLILYGNGPGYKEEING-VRPNVT-ADESKGNDMYRTRSAVP  376

Query  495  WSTHGHSGVDVNIYASSSKDAWPLVGNHENTEIGQFISDYLDL  537
            W++  H+G DV ++A     A  + G  E TEI   ++  L L
Sbjct  377  WTSETHTGEDVAVFAYGPH-AHLVHGLQEQTEIAHVMAKALCL  418



Lambda      K        H        a         alpha
   0.316    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00017220

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395188 pfam00245, Alk_phosphatase, Alkaline phosphatase           328     7e-109


>CDD:395188 pfam00245, Alk_phosphatase, Alkaline phosphatase.  
Length=418

 Score = 328 bits (843),  Expect = 7e-109, Method: Composition-based stats.
 Identities = 142/434 (33%), Positives = 209/434 (48%), Gaps = 62/434 (14%)

Query  93   KRNLIFMVSDGMGPTSLTMTRSYRQFVEGLPIDDILVLDGH--IIGTSRTRSSSSLVTDS  150
             +N+I  + DGMG +++T  R  +    G P  +  +      ++G S+T +    VTDS
Sbjct  1    AKNVIIFLGDGMGVSTVTAARILKGQKGGKPGPETPLAFDRFPLVGLSKTYNVDKQVTDS  60

Query  151  AAGATAFSCGFKSYNGAISVLPDHSPCGTVLEAASLAGYKTGLVVTTRITDATPACFASH  210
            AA ATA+ CG K+YNGAI V        +VLEAA  AG  TGLV TTRI  ATPA   +H
Sbjct  61   AATATAYLCGVKTYNGAIGVDAAGKEVKSVLEAAKAAGKSTGLVTTTRIQHATPAGTYAH  120

Query  211  VNLRQYEDRIAE---------QEIGEHPLGR-VVDLIFGGGRCHFLPNS--TEGSCRADD  258
            V  R++    A          ++I E  +    +D+I GGGR +F P    T+G+ R D 
Sbjct  121  VVSRKWYSDAAMPASALQEGCKDIAEQLINNMKIDVILGGGRKYFFPPEYPTDGT-RKDG  179

Query  259  RDLVSVAKKRGFSYLDDRKGFDSLNGGSEAKLPLLGLFAEKDIPFEIDRRNQNDVYPSLE  318
            R+L+   K +G+ Y+ +RK     N  S +   LLGLFA+ D+P+EIDR       PSL+
Sbjct  180  RNLIEEWKHQGYQYVWNRKELLK-NKDSNSVTYLLGLFADGDMPYEIDR--DEATDPSLK  236

Query  319  EMARTALKILSDATADSEQGFFLMIEGSRIDHAGHGNDPAAQVHEVIAYDKAFAAVLDFL  378
            EM   A+++LS     + +GFFLM+EG RIDHA H ND    + E + +D+A    L+F 
Sbjct  237  EMTEVAIRLLS----KNPKGFFLMVEGGRIDHAHHDNDAYGALTETVDFDQAVKRALEFA  292

Query  379  GKDSTPGVVVSTSDHET----GGLAAARQLHTSYPEYKWLPGVLANASHSTEYIDNKLRE  434
             K+    +VV T+DH      GG        T+     W    L  A     +       
Sbjct  293  KKE-KDTLVVVTADHSHVFSFGGY-------TTRGTSIWGLAPLLAA-KRKPF-------  336

Query  435  FLSTETEKNKQQHYVRELLEKGLGITDATDEEIDSILDPNSPVSSQYQLADMISRRAQIG  494
                                   G      EEI+  + PN   + + +  DM   R+ + 
Sbjct  337  ------------------TLILYGNGPGYKEEING-VRPNVT-ADESKGNDMYRTRSAVP  376

Query  495  WSTHGHSGKSQALY  508
            W++  H+G+  A++
Sbjct  377  WTSETHTGEDVAVF  390



Lambda      K        H        a         alpha
   0.316    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00017221

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   89.6    1e-22


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 89.6 bits (223),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 35/86 (41%), Positives = 41/86 (48%), Gaps = 7/86 (8%)

Query  8    NHGGNASVSGGNTFGDWHEYTIDWKPDAITWSVDGEVKRTLKKESTYNETSKQYMYPQTP  67
            N G        +   D+H Y+I W PD ITW VDG   RTLK             YPQTP
Sbjct  88   NRGEQRFSLWFDPTADFHTYSILWNPDKITWYVDGVPVRTLKNNDAGGVP-----YPQTP  142

Query  68   SRMQLSLWPAGQASNAPG--TIAWAG  91
             R+ +SLWP G  +   G   I WAG
Sbjct  143  MRLYVSLWPGGDWATPGGGVKIDWAG  168



Lambda      K        H        a         alpha
   0.307    0.125    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00010575

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   89.6    1e-22


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 89.6 bits (223),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 35/86 (41%), Positives = 41/86 (48%), Gaps = 7/86 (8%)

Query  8    NHGGNASVSGGNTFGDWHEYTIDWKPDAITWSVDGEVKRTLKKESTYNETSKQYMYPQTP  67
            N G        +   D+H Y+I W PD ITW VDG   RTLK             YPQTP
Sbjct  88   NRGEQRFSLWFDPTADFHTYSILWNPDKITWYVDGVPVRTLKNNDAGGVP-----YPQTP  142

Query  68   SRMQLSLWPAGQASNAPG--TIAWAG  91
             R+ +SLWP G  +   G   I WAG
Sbjct  143  MRLYVSLWPGGDWATPGGGVKIDWAG  168



Lambda      K        H        a         alpha
   0.307    0.125    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00017222

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   89.6    1e-22


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 89.6 bits (223),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 35/86 (41%), Positives = 41/86 (48%), Gaps = 7/86 (8%)

Query  8    NHGGNASVSGGNTFGDWHEYTIDWKPDAITWSVDGEVKRTLKKESTYNETSKQYMYPQTP  67
            N G        +   D+H Y+I W PD ITW VDG   RTLK             YPQTP
Sbjct  88   NRGEQRFSLWFDPTADFHTYSILWNPDKITWYVDGVPVRTLKNNDAGGVP-----YPQTP  142

Query  68   SRMQLSLWPAGQASNAPG--TIAWAG  91
             R+ +SLWP G  +   G   I WAG
Sbjct  143  MRLYVSLWPGGDWATPGGGVKIDWAG  168



Lambda      K        H        a         alpha
   0.307    0.125    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00017223

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00017224

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00010577

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00010576

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00010578

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00010579

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00010580

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00010581

Length=194
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459720 pfam00225, Kinesin, Kinesin motor domain                   259     6e-88


>CDD:459720 pfam00225, Kinesin, Kinesin motor domain.  
Length=326

 Score = 259 bits (665),  Expect = 6e-88, Method: Composition-based stats.
 Identities = 91/191 (48%), Positives = 125/191 (65%), Gaps = 3/191 (2%)

Query  1    MQELFERIEERKGEKHTEVSLSYLEIYNETIRDLLVPGGSKGG-LMLREDSNKSVSVSGL  59
            +++LF+RI++ K      V +SYLEIYNE IRDLL P       L +RED  K V V GL
Sbjct  105  LEDLFDRIQKTKERSEFSVKVSYLEIYNEKIRDLLSPSNKNKRKLRIREDPKKGVYVKGL  164

Query  60   SSHHPQNVQQVMDMIMRGNECRTMSPTEANATSSRSHAVLQINIAQKDRNADVNEPHTMA  119
            +     + ++V++++  GN+ RT++ T+ N  SSRSHA+  I + Q++R+    E     
Sbjct  165  TEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGEESVKTG  224

Query  120  TLSIIDLAGSERASATKNR-GERLLEGANINKSLLALGSCINALCDPRKRNHVPYRNSKL  178
             L+++DLAGSERAS T    G+RL E ANINKSL ALG+ I+AL D  K  H+PYR+SKL
Sbjct  225  KLNLVDLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADK-KSKHIPYRDSKL  283

Query  179  TRLLKFSLGGK  189
            TRLL+ SLGG 
Sbjct  284  TRLLQDSLGGN  294



Lambda      K        H        a         alpha
   0.313    0.129    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00010582

Length=851
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459720 pfam00225, Kinesin, Kinesin motor domain                   331     3e-107


>CDD:459720 pfam00225, Kinesin, Kinesin motor domain.  
Length=326

 Score = 331 bits (851),  Expect = 3e-107, Method: Composition-based stats.
 Identities = 110/223 (49%), Positives = 153/223 (69%), Gaps = 3/223 (1%)

Query  1    MQELFERIEERKGEKHTEVSLSYLEIYNETIRDLLVPGGSKGG-LMLREDSNKSVSVSGL  59
            +++LF+RI++ K      V +SYLEIYNE IRDLL P       L +RED  K V V GL
Sbjct  105  LEDLFDRIQKTKERSEFSVKVSYLEIYNEKIRDLLSPSNKNKRKLRIREDPKKGVYVKGL  164

Query  60   SSHHPQNVQQVMDMIMRGNECRTMSPTEANATSSRSHAVLQINIAQKDRNADVNEPHTMA  119
            +     + ++V++++  GN+ RT++ T+ N  SSRSHA+  I + Q++R+    E     
Sbjct  165  TEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGEESVKTG  224

Query  120  TLSIIDLAGSERASATKNR-GERLLEGANINKSLLALGSCINALCDPRKRNHVPYRNSKL  178
             L+++DLAGSERAS T    G+RL E ANINKSL ALG+ I+AL D  K  H+PYR+SKL
Sbjct  225  KLNLVDLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADK-KSKHIPYRDSKL  283

Query  179  TRLLKFSLGGNCRTVMIVCVSPSSQHFDETQNTLRYANRAKNI  221
            TRLL+ SLGGN +T+MI  +SPSS +++ET +TLR+A+RAKNI
Sbjct  284  TRLLQDSLGGNSKTLMIANISPSSSNYEETLSTLRFASRAKNI  326



Lambda      K        H        a         alpha
   0.312    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1085248584


Query= TCONS_00010583

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459720 pfam00225, Kinesin, Kinesin motor domain                   205     1e-67


>CDD:459720 pfam00225, Kinesin, Kinesin motor domain.  
Length=326

 Score = 205 bits (525),  Expect = 1e-67, Method: Composition-based stats.
 Identities = 70/145 (48%), Positives = 97/145 (67%), Gaps = 2/145 (1%)

Query  2    LREDSNKSVSVSGLSSHHPQNVQQVMDMIMRGNECRTMSPTEANATSSRSHAVLQINIAQ  61
            +RED  K V V GL+     + ++V++++  GN+ RT++ T+ N  SSRSHA+  I + Q
Sbjct  151  IREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQ  210

Query  62   KDRNADVNEPHTMATLSIIDLAGSERASATKNR-GERLLEGANINKSLLALGSCINALCD  120
            ++R+    E      L+++DLAGSERAS T    G+RL E ANINKSL ALG+ I+AL D
Sbjct  211  RNRSTGGEESVKTGKLNLVDLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALAD  270

Query  121  PRKRNHVPYRNSKLTRLLKFSLGGK  145
              K  H+PYR+SKLTRLL+ SLGG 
Sbjct  271  K-KSKHIPYRDSKLTRLLQDSLGGN  294



Lambda      K        H        a         alpha
   0.314    0.126    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0774    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00010584

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00017225

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00010585

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00010586

Length=920
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  184     1e-54
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 184 bits (470),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00017230

Length=920
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  184     1e-54
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 184 bits (470),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00017229

Length=920
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  184     1e-54
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 184 bits (470),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00010587

Length=920
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  184     1e-54
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 184 bits (470),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00017232

Length=920
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  184     1e-54
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 184 bits (470),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00017233

Length=920
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  184     1e-54
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 184 bits (470),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00017231

Length=900
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  184     2e-54
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 184 bits (468),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1155588770


Query= TCONS_00010588

Length=938
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  184     1e-54
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 184 bits (470),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1210138302


Query= TCONS_00010589

Length=920
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  184     1e-54
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 184 bits (470),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00010590

Length=920
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  184     1e-54
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 184 bits (470),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00010591

Length=920
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  185     9e-55
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 185 bits (471),  Expect = 9e-55, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00010592

Length=920
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  184     1e-54
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 184 bits (470),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0774    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00017234

Length=900
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  184     2e-54
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 184 bits (468),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1155588770


Query= TCONS_00010596

Length=900
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  184     2e-54
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 184 bits (468),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1155588770


Query= TCONS_00010595

Length=920
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  184     1e-54
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 184 bits (470),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00010594

Length=920
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  184     1e-54
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 184 bits (470),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00017236

Length=920
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  184     1e-54
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 184 bits (470),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00017235

Length=920
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-bind...  184     1e-54
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  89.6    4e-22


>CDD:406936 pfam16643, cNMPbd_u2, Unstructured region on cNMP-binding protein. 
 cNMPbd_u2 is a natively unstructured region on a set 
of higher eukaryote cyclic nucleotide-binding domain-containing 
proteins. It lies between the second cNMP_binding, pfam00027, 
and the F-box, pfam00646, domains. The function is not 
known but there is a highly conserved DPDPFL sequence motif.
Length=163

 Score = 184 bits (470),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 95/138 (69%), Gaps = 6/138 (4%)

Query  391  VRQQVENTAKERLQSASDGDVVMSDAGSADQPTDG----EFKIRAARRQSMPLLTLTETE  446
            VR+QVE TAKERLQ+A D DV+M+DA  +  P +     + +  +ARR+S+PL+T TE E
Sbjct  1    VRRQVERTAKERLQTADDEDVLMTDADDSTPPINELAIDDLRPTSARRKSLPLVTFTEPE  60

Query  447  LDSP-RAPGAMEDQNVLKPSDPDPFLNVGLDKVRLRSRRGSVAPLTPDEVSGEQQRQSPP  505
            LDSP +     +D NV++PSDPDPFL+V LD VR RSRRGS+AP TP+  SGEQQR+S P
Sbjct  61   LDSPHKPSRLEDDSNVMEPSDPDPFLSVDLDNVRSRSRRGSLAPPTPET-SGEQQRESSP  119

Query  506  SGTRSTRSSLHSLSDTST  523
            +       S  S S+T +
Sbjct  120  TSPTPQSPSSSSSSETPS  137


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 89.6 bits (223),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 48/82 (59%), Gaps = 3/82 (4%)

Query  85   APNDYILTEGDEAKAIYWLVRGAV--SATSRDG-ESIYADLEPGAFFGEIGVLMDRPRTA  141
               + I  EGD A ++Y ++ G V    T  DG E I A L PG FFGE+ +L   PR+A
Sbjct  5    KAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEPRSA  64

Query  142  TIIARTRCLLVVLSKEDFRNIL  163
            T++A T   L+V+ +EDF  +L
Sbjct  65   TVVALTDSELLVIPREDFLELL  86


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 46/102 (45%), Gaps = 14/102 (14%)

Query  285  PRSYPPFTDIIRQDSQGREIYFIVRGEVEVLTERTDAQDRHSLAASIENPPFEVKARLKQ  344
             RSY     I R+      +Y ++ G+V+V     D +++             + A L  
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQ-------------ILAVLGP  47

Query  345  GQYFGEVVSLSLAPRRTATVRSVTAVECLMLSGDVLAEFWDK  386
            G +FGE ++L     R+ATV ++T  E L++  +   E  ++
Sbjct  48   GDFFGE-LALLGGEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00017237

Length=561


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00017238

Length=459


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00010597

Length=248


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00010599

Length=459


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00010598

Length=432


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00017239

Length=561


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00017240

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00010601

Length=432


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00010600

Length=393


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 472215968


Query= TCONS_00010602

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0706    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00017241

Length=459


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00010603

Length=561


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00017242

Length=431


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00010604

Length=621


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790552412


Query= TCONS_00017243

Length=378


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00010605

Length=250


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00010606

Length=439


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00017244

Length=432


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00017245

Length=548


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00017246

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00017247

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00010608

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430644 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein i...  82.2    3e-20


>CDD:430644 pfam09494, Slx4, Slx4 endonuclease.  The Slx4 protein is a heteromeric 
structure-specific endonuclease found from fungi to 
mammals. Slx4 with Slx1 acts as a nuclease on branched DNA 
substrates, particularly simple-Y, 5'-flap, or replication 
fork structures by cleaving the strand bearing the 5' non-homologous 
arm at the branch junction and thus generating ligatable 
nicked products from 5'-flap or replication fork substrates.
Length=60

 Score = 82.2 bits (204),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 36/73 (49%), Gaps = 15/73 (21%)

Query  390  ASQITKAVRLQPRSFSVDCKRPSWHEKILMYDPIILEDFATWLNIEGLGLVHEDREVSAE  449
               IT+ ++            PS +EKIL Y+PI+LED   WLN  G        EV   
Sbjct  1    FEAITELIK----------SDPSLYEKILTYEPIVLEDLTAWLNEGG-----FLIEVDPG  45

Query  450  FVRQWCESNGICC  462
             +++WC+S GIC 
Sbjct  46   TLKEWCDSQGICF  58



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 587408632


Query= TCONS_00010607

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430644 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein i...  82.2    3e-20


>CDD:430644 pfam09494, Slx4, Slx4 endonuclease.  The Slx4 protein is a heteromeric 
structure-specific endonuclease found from fungi to 
mammals. Slx4 with Slx1 acts as a nuclease on branched DNA 
substrates, particularly simple-Y, 5'-flap, or replication 
fork structures by cleaving the strand bearing the 5' non-homologous 
arm at the branch junction and thus generating ligatable 
nicked products from 5'-flap or replication fork substrates.
Length=60

 Score = 82.2 bits (204),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 36/73 (49%), Gaps = 15/73 (21%)

Query  390  ASQITKAVRLQPRSFSVDCKRPSWHEKILMYDPIILEDFATWLNIEGLGLVHEDREVSAE  449
               IT+ ++            PS +EKIL Y+PI+LED   WLN  G        EV   
Sbjct  1    FEAITELIK----------SDPSLYEKILTYEPIVLEDLTAWLNEGG-----FLIEVDPG  45

Query  450  FVRQWCESNGICC  462
             +++WC+S GIC 
Sbjct  46   TLKEWCDSQGICF  58



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 587408632


Query= TCONS_00017248

Length=61
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371514 pfam11410, Antifungal_pept, Antifungal peptide. This p...  57.5    3e-14


>CDD:371514 pfam11410, Antifungal_pept, Antifungal peptide.  This peptide 
has six cysteines involved in three disulphide bonds. It contains 
a global fold which involves a cysteine-knotted three-stranded 
antiparallel beta-sheet along with a flexible loop 
and four beta-reverse turns. It also has an amphiphilic character 
which is the main structural basis of its biological 
function.
Length=33

 Score = 57.5 bits (139),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 28/33 (85%), Positives = 32/33 (97%), Gaps = 0/33 (0%)

Query  29  IPAGQTCKKDGSMGVCQSGYCMQDEKASSGVCK  61
           IP GQTCKKDGSMGVC+SGYC+QD+KAS+GVCK
Sbjct  1   IPNGQTCKKDGSMGVCESGYCLQDQKASTGVCK  33



Lambda      K        H        a         alpha
   0.320    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00010609

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430644 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein i...  82.6    2e-20


>CDD:430644 pfam09494, Slx4, Slx4 endonuclease.  The Slx4 protein is a heteromeric 
structure-specific endonuclease found from fungi to 
mammals. Slx4 with Slx1 acts as a nuclease on branched DNA 
substrates, particularly simple-Y, 5'-flap, or replication 
fork structures by cleaving the strand bearing the 5' non-homologous 
arm at the branch junction and thus generating ligatable 
nicked products from 5'-flap or replication fork substrates.
Length=60

 Score = 82.6 bits (205),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 36/73 (49%), Gaps = 15/73 (21%)

Query  337  ASQITKAVRLQPRSFSVDCKRPSWHEKILMYDPIILEDFATWLNIEGLGLVHEDREVSAE  396
               IT+ ++            PS +EKIL Y+PI+LED   WLN  G        EV   
Sbjct  1    FEAITELIK----------SDPSLYEKILTYEPIVLEDLTAWLNEGG-----FLIEVDPG  45

Query  397  FVRQWCESNGICC  409
             +++WC+S GIC 
Sbjct  46   TLKEWCDSQGICF  58



Lambda      K        H        a         alpha
   0.311    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00010615

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430644 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein i...  82.2    3e-20


>CDD:430644 pfam09494, Slx4, Slx4 endonuclease.  The Slx4 protein is a heteromeric 
structure-specific endonuclease found from fungi to 
mammals. Slx4 with Slx1 acts as a nuclease on branched DNA 
substrates, particularly simple-Y, 5'-flap, or replication 
fork structures by cleaving the strand bearing the 5' non-homologous 
arm at the branch junction and thus generating ligatable 
nicked products from 5'-flap or replication fork substrates.
Length=60

 Score = 82.2 bits (204),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 36/73 (49%), Gaps = 15/73 (21%)

Query  390  ASQITKAVRLQPRSFSVDCKRPSWHEKILMYDPIILEDFATWLNIEGLGLVHEDREVSAE  449
               IT+ ++            PS +EKIL Y+PI+LED   WLN  G        EV   
Sbjct  1    FEAITELIK----------SDPSLYEKILTYEPIVLEDLTAWLNEGG-----FLIEVDPG  45

Query  450  FVRQWCESNGICC  462
             +++WC+S GIC 
Sbjct  46   TLKEWCDSQGICF  58



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 587408632


Query= TCONS_00017249

Length=61
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371514 pfam11410, Antifungal_pept, Antifungal peptide. This p...  57.5    3e-14


>CDD:371514 pfam11410, Antifungal_pept, Antifungal peptide.  This peptide 
has six cysteines involved in three disulphide bonds. It contains 
a global fold which involves a cysteine-knotted three-stranded 
antiparallel beta-sheet along with a flexible loop 
and four beta-reverse turns. It also has an amphiphilic character 
which is the main structural basis of its biological 
function.
Length=33

 Score = 57.5 bits (139),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 28/33 (85%), Positives = 32/33 (97%), Gaps = 0/33 (0%)

Query  29  IPAGQTCKKDGSMGVCQSGYCMQDEKASSGVCK  61
           IP GQTCKKDGSMGVC+SGYC+QD+KAS+GVCK
Sbjct  1   IPNGQTCKKDGSMGVCESGYCLQDQKASTGVCK  33



Lambda      K        H        a         alpha
   0.320    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00010610

Length=61
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371514 pfam11410, Antifungal_pept, Antifungal peptide. This p...  57.5    3e-14


>CDD:371514 pfam11410, Antifungal_pept, Antifungal peptide.  This peptide 
has six cysteines involved in three disulphide bonds. It contains 
a global fold which involves a cysteine-knotted three-stranded 
antiparallel beta-sheet along with a flexible loop 
and four beta-reverse turns. It also has an amphiphilic character 
which is the main structural basis of its biological 
function.
Length=33

 Score = 57.5 bits (139),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 28/33 (85%), Positives = 32/33 (97%), Gaps = 0/33 (0%)

Query  29  IPAGQTCKKDGSMGVCQSGYCMQDEKASSGVCK  61
           IP GQTCKKDGSMGVC+SGYC+QD+KAS+GVCK
Sbjct  1   IPNGQTCKKDGSMGVCESGYCLQDQKASTGVCK  33



Lambda      K        H        a         alpha
   0.320    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00017250

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430644 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein i...  82.2    3e-20


>CDD:430644 pfam09494, Slx4, Slx4 endonuclease.  The Slx4 protein is a heteromeric 
structure-specific endonuclease found from fungi to 
mammals. Slx4 with Slx1 acts as a nuclease on branched DNA 
substrates, particularly simple-Y, 5'-flap, or replication 
fork structures by cleaving the strand bearing the 5' non-homologous 
arm at the branch junction and thus generating ligatable 
nicked products from 5'-flap or replication fork substrates.
Length=60

 Score = 82.2 bits (204),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 36/73 (49%), Gaps = 15/73 (21%)

Query  390  ASQITKAVRLQPRSFSVDCKRPSWHEKILMYDPIILEDFATWLNIEGLGLVHEDREVSAE  449
               IT+ ++            PS +EKIL Y+PI+LED   WLN  G        EV   
Sbjct  1    FEAITELIK----------SDPSLYEKILTYEPIVLEDLTAWLNEGG-----FLIEVDPG  45

Query  450  FVRQWCESNGICC  462
             +++WC+S GIC 
Sbjct  46   TLKEWCDSQGICF  58



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 587408632


Query= TCONS_00010612

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430644 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein i...  82.6    2e-20


>CDD:430644 pfam09494, Slx4, Slx4 endonuclease.  The Slx4 protein is a heteromeric 
structure-specific endonuclease found from fungi to 
mammals. Slx4 with Slx1 acts as a nuclease on branched DNA 
substrates, particularly simple-Y, 5'-flap, or replication 
fork structures by cleaving the strand bearing the 5' non-homologous 
arm at the branch junction and thus generating ligatable 
nicked products from 5'-flap or replication fork substrates.
Length=60

 Score = 82.6 bits (205),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 36/73 (49%), Gaps = 15/73 (21%)

Query  337  ASQITKAVRLQPRSFSVDCKRPSWHEKILMYDPIILEDFATWLNIEGLGLVHEDREVSAE  396
               IT+ ++            PS +EKIL Y+PI+LED   WLN  G        EV   
Sbjct  1    FEAITELIK----------SDPSLYEKILTYEPIVLEDLTAWLNEGG-----FLIEVDPG  45

Query  397  FVRQWCESNGICC  409
             +++WC+S GIC 
Sbjct  46   TLKEWCDSQGICF  58



Lambda      K        H        a         alpha
   0.311    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00010613

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430644 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein i...  82.2    3e-20


>CDD:430644 pfam09494, Slx4, Slx4 endonuclease.  The Slx4 protein is a heteromeric 
structure-specific endonuclease found from fungi to 
mammals. Slx4 with Slx1 acts as a nuclease on branched DNA 
substrates, particularly simple-Y, 5'-flap, or replication 
fork structures by cleaving the strand bearing the 5' non-homologous 
arm at the branch junction and thus generating ligatable 
nicked products from 5'-flap or replication fork substrates.
Length=60

 Score = 82.2 bits (204),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 36/73 (49%), Gaps = 15/73 (21%)

Query  390  ASQITKAVRLQPRSFSVDCKRPSWHEKILMYDPIILEDFATWLNIEGLGLVHEDREVSAE  449
               IT+ ++            PS +EKIL Y+PI+LED   WLN  G        EV   
Sbjct  1    FEAITELIK----------SDPSLYEKILTYEPIVLEDLTAWLNEGG-----FLIEVDPG  45

Query  450  FVRQWCESNGICC  462
             +++WC+S GIC 
Sbjct  46   TLKEWCDSQGICF  58



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 587408632


Query= TCONS_00010614

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430644 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein i...  82.2    3e-20


>CDD:430644 pfam09494, Slx4, Slx4 endonuclease.  The Slx4 protein is a heteromeric 
structure-specific endonuclease found from fungi to 
mammals. Slx4 with Slx1 acts as a nuclease on branched DNA 
substrates, particularly simple-Y, 5'-flap, or replication 
fork structures by cleaving the strand bearing the 5' non-homologous 
arm at the branch junction and thus generating ligatable 
nicked products from 5'-flap or replication fork substrates.
Length=60

 Score = 82.2 bits (204),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 36/73 (49%), Gaps = 15/73 (21%)

Query  390  ASQITKAVRLQPRSFSVDCKRPSWHEKILMYDPIILEDFATWLNIEGLGLVHEDREVSAE  449
               IT+ ++            PS +EKIL Y+PI+LED   WLN  G        EV   
Sbjct  1    FEAITELIK----------SDPSLYEKILTYEPIVLEDLTAWLNEGG-----FLIEVDPG  45

Query  450  FVRQWCESNGICC  462
             +++WC+S GIC 
Sbjct  46   TLKEWCDSQGICF  58



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 587408632


Query= TCONS_00010616

Length=61
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371514 pfam11410, Antifungal_pept, Antifungal peptide. This p...  57.5    3e-14


>CDD:371514 pfam11410, Antifungal_pept, Antifungal peptide.  This peptide 
has six cysteines involved in three disulphide bonds. It contains 
a global fold which involves a cysteine-knotted three-stranded 
antiparallel beta-sheet along with a flexible loop 
and four beta-reverse turns. It also has an amphiphilic character 
which is the main structural basis of its biological 
function.
Length=33

 Score = 57.5 bits (139),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 28/33 (85%), Positives = 32/33 (97%), Gaps = 0/33 (0%)

Query  29  IPAGQTCKKDGSMGVCQSGYCMQDEKASSGVCK  61
           IP GQTCKKDGSMGVC+SGYC+QD+KAS+GVCK
Sbjct  1   IPNGQTCKKDGSMGVCESGYCLQDQKASTGVCK  33



Lambda      K        H        a         alpha
   0.320    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00010617

Length=61
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371514 pfam11410, Antifungal_pept, Antifungal peptide. This p...  57.5    3e-14


>CDD:371514 pfam11410, Antifungal_pept, Antifungal peptide.  This peptide 
has six cysteines involved in three disulphide bonds. It contains 
a global fold which involves a cysteine-knotted three-stranded 
antiparallel beta-sheet along with a flexible loop 
and four beta-reverse turns. It also has an amphiphilic character 
which is the main structural basis of its biological 
function.
Length=33

 Score = 57.5 bits (139),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 28/33 (85%), Positives = 32/33 (97%), Gaps = 0/33 (0%)

Query  29  IPAGQTCKKDGSMGVCQSGYCMQDEKASSGVCK  61
           IP GQTCKKDGSMGVC+SGYC+QD+KAS+GVCK
Sbjct  1   IPNGQTCKKDGSMGVCESGYCLQDQKASTGVCK  33



Lambda      K        H        a         alpha
   0.320    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00010618

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430644 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein i...  82.6    6e-21


>CDD:430644 pfam09494, Slx4, Slx4 endonuclease.  The Slx4 protein is a heteromeric 
structure-specific endonuclease found from fungi to 
mammals. Slx4 with Slx1 acts as a nuclease on branched DNA 
substrates, particularly simple-Y, 5'-flap, or replication 
fork structures by cleaving the strand bearing the 5' non-homologous 
arm at the branch junction and thus generating ligatable 
nicked products from 5'-flap or replication fork substrates.
Length=60

 Score = 82.6 bits (205),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 26/73 (36%), Positives = 36/73 (49%), Gaps = 15/73 (21%)

Query  219  ASQITKAVRLQPRSFSVDCKRPSWHEKILMYDPIILEDFATWLNIEGLGLVHEDREVSAE  278
               IT+ ++            PS +EKIL Y+PI+LED   WLN  G        EV   
Sbjct  1    FEAITELIK----------SDPSLYEKILTYEPIVLEDLTAWLNEGG-----FLIEVDPG  45

Query  279  FVRQWCESNGICC  291
             +++WC+S GIC 
Sbjct  46   TLKEWCDSQGICF  58



Lambda      K        H        a         alpha
   0.311    0.124    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00010619

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00010620

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460029 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Ba...  119     5e-33


>CDD:460029 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.  Programmed 
cell-death involves a set of Bcl-2 family proteins, 
some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some 
of which promote it (Bax and Bak). Human Bax inhibitor, BI-1, 
is an evolutionarily conserved integral membrane protein 
containing multiple membrane-spanning segments predominantly 
localized to intracellular membranes. It has 6-7 membrane-spanning 
domains. The C termini of the mammalian BI-1 proteins 
are comprised of basic amino acids resembling some nuclear 
targeting sequences, but otherwise the predicted proteins lack 
motifs that suggest a function. As plant BI-1 appears to 
localize predominantly to the ER, we hypothesized that plant 
BI-1 could also regulate cell death triggered by ER stress. 
BI-1 appears to exert its effect through an interaction with 
calmodulin. The budding yeast member of this family has been 
found unexpectedly to encode a BH3 domain-containing protein 
(Ybh3p) that regulates the mitochondrial pathway of apoptosis 
in a phylogenetically conserved manner. Examination of 
the crystal structure of a bacterial member of this family 
shows that these proteins mediate a calcium leak across the 
membrane that is pH-dependent. Calcium homoeostasis balances 
passive calcium leak with active calcium uptake. The structure 
exists in a pore-closed and pore-open conformation, at 
pHs of 8 and 6 respectively, and the pore can be opened by intracrystalline 
transition; together these findings suggest 
that pH controls the conformational transition.
Length=207

 Score = 119 bits (302),  Expect = 5e-33, Method: Composition-based stats.
 Identities = 52/219 (24%), Positives = 94/219 (43%), Gaps = 15/219 (7%)

Query  114  RSYLNETFMHTGLGVGIIGIAARALHMNGW--SYRLMATNPWLVAGVGLAASMGTMFATY  171
            R +L + +    LG+ +    A  +  +       L     W++    L    G +    
Sbjct  1    RQFLRKVYGLLALGLLLTAAVAYLVLSSPALLFPSLHPPLFWVLIIAPLGLLFGAL-LLA  59

Query  172  YTSPDNYVMKYGLWAAFNVTQAALLSPLMFMH-PALLARAGLYTVGMMGSIAFVGATAKQ  230
                 +  +   L  AF +     L PL+ ++  A++A A L T  + G ++    T K 
Sbjct  60   RKRKYSSNVALLLLLAFTLLMGLTLGPLLLVYTGAIIATAFLGTAAIFGGLSLYALTTK-  118

Query  231  EKYLYLGGPLLAGVTIVALSGLAPLVIPATAARALMWSEKIWLYGGLAVFGGFTLYDVQK  290
                +LGG L AG+  + ++ L  + +P++             Y G+ +F GF LYD Q+
Sbjct  119  RDLSFLGGFLFAGLIGLIVASLVNIFLPSS------ALSLAISYLGVLLFSGFILYDTQR  172

Query  291  ILHHARLAERGLVRRDVVNESISLELDFINIFVRMVQIL  329
            I+             D +  ++SL LDFIN+F+ +++IL
Sbjct  173  IIKRYGEYGDY----DAILAALSLYLDFINLFLSLLRIL  207



Lambda      K        H        a         alpha
   0.325    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00017251

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460029 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Ba...  119     5e-33


>CDD:460029 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.  Programmed 
cell-death involves a set of Bcl-2 family proteins, 
some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some 
of which promote it (Bax and Bak). Human Bax inhibitor, BI-1, 
is an evolutionarily conserved integral membrane protein 
containing multiple membrane-spanning segments predominantly 
localized to intracellular membranes. It has 6-7 membrane-spanning 
domains. The C termini of the mammalian BI-1 proteins 
are comprised of basic amino acids resembling some nuclear 
targeting sequences, but otherwise the predicted proteins lack 
motifs that suggest a function. As plant BI-1 appears to 
localize predominantly to the ER, we hypothesized that plant 
BI-1 could also regulate cell death triggered by ER stress. 
BI-1 appears to exert its effect through an interaction with 
calmodulin. The budding yeast member of this family has been 
found unexpectedly to encode a BH3 domain-containing protein 
(Ybh3p) that regulates the mitochondrial pathway of apoptosis 
in a phylogenetically conserved manner. Examination of 
the crystal structure of a bacterial member of this family 
shows that these proteins mediate a calcium leak across the 
membrane that is pH-dependent. Calcium homoeostasis balances 
passive calcium leak with active calcium uptake. The structure 
exists in a pore-closed and pore-open conformation, at 
pHs of 8 and 6 respectively, and the pore can be opened by intracrystalline 
transition; together these findings suggest 
that pH controls the conformational transition.
Length=207

 Score = 119 bits (302),  Expect = 5e-33, Method: Composition-based stats.
 Identities = 52/219 (24%), Positives = 94/219 (43%), Gaps = 15/219 (7%)

Query  114  RSYLNETFMHTGLGVGIIGIAARALHMNGW--SYRLMATNPWLVAGVGLAASMGTMFATY  171
            R +L + +    LG+ +    A  +  +       L     W++    L    G +    
Sbjct  1    RQFLRKVYGLLALGLLLTAAVAYLVLSSPALLFPSLHPPLFWVLIIAPLGLLFGAL-LLA  59

Query  172  YTSPDNYVMKYGLWAAFNVTQAALLSPLMFMH-PALLARAGLYTVGMMGSIAFVGATAKQ  230
                 +  +   L  AF +     L PL+ ++  A++A A L T  + G ++    T K 
Sbjct  60   RKRKYSSNVALLLLLAFTLLMGLTLGPLLLVYTGAIIATAFLGTAAIFGGLSLYALTTK-  118

Query  231  EKYLYLGGPLLAGVTIVALSGLAPLVIPATAARALMWSEKIWLYGGLAVFGGFTLYDVQK  290
                +LGG L AG+  + ++ L  + +P++             Y G+ +F GF LYD Q+
Sbjct  119  RDLSFLGGFLFAGLIGLIVASLVNIFLPSS------ALSLAISYLGVLLFSGFILYDTQR  172

Query  291  ILHHARLAERGLVRRDVVNESISLELDFINIFVRMVQIL  329
            I+             D +  ++SL LDFIN+F+ +++IL
Sbjct  173  IIKRYGEYGDY----DAILAALSLYLDFINLFLSLLRIL  207



Lambda      K        H        a         alpha
   0.325    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00017252

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  176     4e-51
CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF196...  143     1e-41


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 176 bits (449),  Expect = 4e-51, Method: Composition-based stats.
 Identities = 95/370 (26%), Positives = 139/370 (38%), Gaps = 81/370 (22%)

Query  65   GSWRGTIQHLDYIQGMGFDAIMISPIVQNVEGRVQYGEAYHGYWVQDMYALNPHFGTHQD  124
            G  +G I+ LDY++ +G  AI +SPI           +A HGY + D Y ++PH+GT +D
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLSPIFD-------SPQADHGYDIADYYKIDPHYGTMED  53

Query  125  LLDLSKAVHDRGMYLMVDTVINNLAYITDGRNPATSIDYSALRPFNDSMFFHPYCKIT--  182
              +L    H+RG+ +++D V+N+ +        + S   S   P+ D  F+ P       
Sbjct  54   FKELISKAHERGIKVILDLVVNHTSDEHAWFQESRS---SKDNPYRDYYFWRPGGGPIPP  110

Query  183  ----DYDNYPLAQTCWTGD------DVVPLPDLKTEDSQVQSMLMD----WIRKMMATYS  228
                 Y           G        V   PDL  E+ +V++ L D    W+ K      
Sbjct  111  NNWRSYFGGSAWTYDEKGQEYYLHLFVAGQPDLNWENPEVRNELYDVVRFWLDK-----G  165

Query  229  IDGLRLDAAKHITPSFLPLFQNASG------------------AFITGEVFEPSVKTICG  270
            IDG R+D  KHI+      F+N                         GEVF    +    
Sbjct  166  IDGFRIDVVKHISKVPGLPFENNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDGEWARV  225

Query  271  YQ----KDLPSVPNYPIYYSILEAFTK--GNTSSLTNQVEVMKQTCSD----VTALTSFS  320
            Y      +L    N+P     L+ F K      S     E++               +F 
Sbjct  226  YTTEARMELEMGFNFPHNDVALKPFIKWDLAPISARKLKEMITDWLDALPDTNGWNFTFL  285

Query  321  ENHDVARFAS-FKDDIAVRQRTPVTLKVSTDDRLTPAQLAKNVLTFTMLFDGIPMIYQGQ  379
             NHD  RF S F DD A                      AK +  F +   G P IYQG+
Sbjct  286  GNHDQPRFLSRFGDDRA---------------------SAKLLAVFLLTLRGTPYIYQGE  324

Query  380  EQHFSGASDP  389
            E   +G +DP
Sbjct  325  EIGMTGGNDP  334


>CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF1966).  This 
domain is found in various fungal alpha-amylase proteins. 
Its exact function has not, as yet, been defined.
Length=90

 Score = 143 bits (362),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 48/90 (53%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query  434  PIYTGSSEMGFRKGVEGRQLVMVLSTQGMDSGKYELDMP-IGYQPGFVVTDVLNCANYSV  492
            PIY+ SS +  RKG EG Q+V VLS QG   G Y L +P  GY  G  V +VL+C   +V
Sbjct  1    PIYSDSSTLAMRKGPEGSQVVTVLSNQGSSGGSYTLSLPGTGYNAGTSVVEVLSCTTVTV  60

Query  493  NDMGLLKVSMDKGEPRVLFPADMMEGSGLC  522
            +  G L V MD GEPRVLFPA ++ GSGLC
Sbjct  61   DSSGNLTVPMDSGEPRVLFPASLLSGSGLC  90



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00010622

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0769    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00010623

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalyt...  63.0    1e-13


>CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain. 
 Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary 
fold is highly similar to that of tyrosine-specific phosphatases, 
except for a "recognition" region.
Length=127

 Score = 63.0 bits (154),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 25/111 (23%), Positives = 45/111 (41%), Gaps = 25/111 (23%)

Query  36   RHKWVQGADSSTQDLLAHMSDICYFINQMASPVLSSLSSLVIEHKHDTNDEPCRAPPEAI  95
             +  +   D+   ++  ++ +   FI+                          R     +
Sbjct  37   LYLRIPVEDNHETNISKYLEEAVEFIDD------------------------ARQKGGKV  72

Query  96   LIHCDFGISRSPTIIVAYIMRKLCMPQADVLQFVQSK-QRIKPSPNFTRQL  145
            L+HC  GISRS T+I+AY+M+   +   +   FV+ +   I P+  F RQL
Sbjct  73   LVHCQAGISRSATLIIAYLMKTRNLSLNEAYSFVKERRPGISPNFGFKRQL  123



Lambda      K        H        a         alpha
   0.324    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00017253

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00010625

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  63.4    2e-14


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 63.4 bits (155),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 42/68 (62%), Gaps = 1/68 (1%)

Query  85   TNIHEEASEEDVTDLFAEYGEIKNFSLNLDRRTGYVKGYALIEYSTLPEASDAIKALNGA  144
             N+  + +EED+ DLF+++G IK+  L  D  TG  KG+A +E+    +A  AI+ALNG 
Sbjct  4    GNLPPDTTEEDLKDLFSKFGPIKSIRLVRDE-TGRSKGFAFVEFEDEEDAEKAIEALNGK  62

Query  145  KLLDQTIH  152
            +L  + + 
Sbjct  63   ELGGRELK  70



Lambda      K        H        a         alpha
   0.313    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00010624

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  63.4    2e-14


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 63.4 bits (155),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 42/68 (62%), Gaps = 1/68 (1%)

Query  85   TNIHEEASEEDVTDLFAEYGEIKNFSLNLDRRTGYVKGYALIEYSTLPEASDAIKALNGA  144
             N+  + +EED+ DLF+++G IK+  L  D  TG  KG+A +E+    +A  AI+ALNG 
Sbjct  4    GNLPPDTTEEDLKDLFSKFGPIKSIRLVRDE-TGRSKGFAFVEFEDEEDAEKAIEALNGK  62

Query  145  KLLDQTIH  152
            +L  + + 
Sbjct  63   ELGGRELK  70



Lambda      K        H        a         alpha
   0.313    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00010626

Length=158
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  63.8    6e-15


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 63.8 bits (156),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 42/68 (62%), Gaps = 1/68 (1%)

Query  46   TNIHEEASEEDVTDLFAEYGEIKNFSLNLDRRTGYVKGYALIEYSTLPEASDAIKALNGA  105
             N+  + +EED+ DLF+++G IK+  L  D  TG  KG+A +E+    +A  AI+ALNG 
Sbjct  4    GNLPPDTTEEDLKDLFSKFGPIKSIRLVRDE-TGRSKGFAFVEFEDEEDAEKAIEALNGK  62

Query  106  KLLDQTIH  113
            +L  + + 
Sbjct  63   ELGGRELK  70



Lambda      K        H        a         alpha
   0.310    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00010628

Length=620
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 7...  72.3    3e-14


>CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76.  Family 
of alpha-1,6-mannanases.
Length=348

 Score = 72.3 bits (178),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 51/215 (24%), Positives = 83/215 (39%), Gaps = 53/215 (25%)

Query  227  FYELASSGWDRSLCGGGMIW--SPYLGP--YKNAITNELYISASIGMYLYHPGDVINSPF  282
            F   AS  WD   CGGG+ W   P+     YKN+I+N      +  +  Y          
Sbjct  121  FNTQAS-RWDTETCGGGLRWQIFPWNSGYDYKNSISNGCLFQLAARLARY----------  169

Query  283  ASPSRTSEVASDGYPHNPAHLQAAIEGYEWLKSSNMIGIG-GLYADGFHISGWRSVTQPG  341
                 T          N  +L  A + ++W     +I     L  DG  ++         
Sbjct  170  -----TG---------NQTYLDWAEKVWDWSVDVGLIDDDDWLVYDGADVND--------  207

Query  342  TRRCDVLNPMVYTYNQGVILSGLRGLWLATASQDYLQDGHDLVRKVIRATGWPNKDAREW  401
               C  +N + +TYNQG  LSG   ++  T  + +L     L+     +  +P+      
Sbjct  208  --NCTDINKLQWTYNQGTYLSGAAYMYNYTGDEKWLDRAEGLLNAT-LSHFFPD------  258

Query  402  AGLGRGGVL-EDACDSSGSCSQNGQTFKGIFFHHL  435
                 G ++ E AC+ S +C+ + ++FKGI    L
Sbjct  259  -----GNIMYEVACEPSTTCNNDQRSFKGILSRWL  288



Lambda      K        H        a         alpha
   0.318    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789057984


Query= TCONS_00010627

Length=620
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 7...  72.3    3e-14


>CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76.  Family 
of alpha-1,6-mannanases.
Length=348

 Score = 72.3 bits (178),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 51/215 (24%), Positives = 83/215 (39%), Gaps = 53/215 (25%)

Query  227  FYELASSGWDRSLCGGGMIW--SPYLGP--YKNAITNELYISASIGMYLYHPGDVINSPF  282
            F   AS  WD   CGGG+ W   P+     YKN+I+N      +  +  Y          
Sbjct  121  FNTQAS-RWDTETCGGGLRWQIFPWNSGYDYKNSISNGCLFQLAARLARY----------  169

Query  283  ASPSRTSEVASDGYPHNPAHLQAAIEGYEWLKSSNMIGIG-GLYADGFHISGWRSVTQPG  341
                 T          N  +L  A + ++W     +I     L  DG  ++         
Sbjct  170  -----TG---------NQTYLDWAEKVWDWSVDVGLIDDDDWLVYDGADVND--------  207

Query  342  TRRCDVLNPMVYTYNQGVILSGLRGLWLATASQDYLQDGHDLVRKVIRATGWPNKDAREW  401
               C  +N + +TYNQG  LSG   ++  T  + +L     L+     +  +P+      
Sbjct  208  --NCTDINKLQWTYNQGTYLSGAAYMYNYTGDEKWLDRAEGLLNAT-LSHFFPD------  258

Query  402  AGLGRGGVL-EDACDSSGSCSQNGQTFKGIFFHHL  435
                 G ++ E AC+ S +C+ + ++FKGI    L
Sbjct  259  -----GNIMYEVACEPSTTCNNDQRSFKGILSRWL  288



Lambda      K        H        a         alpha
   0.318    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789057984


Query= TCONS_00010629

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00017254

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00017255

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00017256

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00017257

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00010633

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461540 pfam05064, Nsp1_C, Nsp1-like C-terminal region. This f...  170     3e-51


>CDD:461540 pfam05064, Nsp1_C, Nsp1-like C-terminal region.  This family 
probably forms a coiled-coil. This important region of Nsp1 
is involved in binding Nup82.
Length=114

 Score = 170 bits (434),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 52/110 (47%), Positives = 71/110 (65%), Gaps = 3/110 (3%)

Query  471  STVGPTPPAQSRLKNKTMDEIITRWATDLTKYQKEFREQAEKVAEWDRMLVENTAKVQKL  530
              V P P A   LKNKT+D+II +W+T L+K  KEF  QA KV EWDR+LVEN  K+ KL
Sbjct  4    KPVEPPPSA---LKNKTLDDIINKWSTQLSKQSKEFETQAAKVNEWDRVLVENGDKISKL  60

Query  531  YGSTVDADRATQEIERQLASVEGQQEELSSWLDRYEREVDEMMSKQVGPG  580
            Y  T++A++    I++QL  VE QQ+EL S LD YE +++E++       
Sbjct  61   YSETLEAEQDQNRIDQQLDYVESQQDELESLLDNYEEQLEELLGDITSQN  110



Lambda      K        H        a         alpha
   0.304    0.120    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00017258

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00017259

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461540 pfam05064, Nsp1_C, Nsp1-like C-terminal region. This f...  170     3e-51


>CDD:461540 pfam05064, Nsp1_C, Nsp1-like C-terminal region.  This family 
probably forms a coiled-coil. This important region of Nsp1 
is involved in binding Nup82.
Length=114

 Score = 170 bits (434),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 52/110 (47%), Positives = 71/110 (65%), Gaps = 3/110 (3%)

Query  471  STVGPTPPAQSRLKNKTMDEIITRWATDLTKYQKEFREQAEKVAEWDRMLVENTAKVQKL  530
              V P P A   LKNKT+D+II +W+T L+K  KEF  QA KV EWDR+LVEN  K+ KL
Sbjct  4    KPVEPPPSA---LKNKTLDDIINKWSTQLSKQSKEFETQAAKVNEWDRVLVENGDKISKL  60

Query  531  YGSTVDADRATQEIERQLASVEGQQEELSSWLDRYEREVDEMMSKQVGPG  580
            Y  T++A++    I++QL  VE QQ+EL S LD YE +++E++       
Sbjct  61   YSETLEAEQDQNRIDQQLDYVESQQDELESLLDNYEEQLEELLGDITSQN  110



Lambda      K        H        a         alpha
   0.304    0.120    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00017260

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.147    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00017261

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428014 pfam04568, IATP, Mitochondrial ATPase inhibitor, IATP....  88.8    3e-25


>CDD:428014 pfam04568, IATP, Mitochondrial ATPase inhibitor, IATP.  ATP synthase 
inhibitor prevents the enzyme from switching to ATP 
hydrolysis during collapse of the electrochemical gradient, 
for example during oxygen deprivation ATP synthase inhibitor 
forms a one to one complex with the F1 ATPase, possibly by 
binding at the alpha-beta interface. It is thought to inhibit 
ATP synthesis by preventing the release of ATP. The minimum 
inhibitory region for bovine inhibitor is from residues 39 
to 72. The inhibitor has two oligomeric states, dimer (the 
active state) and tetramer. At low pH, the inhibitor forms a 
dimer via antiparallel coiled coil interactions between the 
C terminal regions of two monomers. At high pH, the inhibitor 
forms tetramers and higher oligomers by coiled coil interactions 
involving the N-terminus and inhibitory region, thus 
preventing the inhibitory activity.
Length=98

 Score = 88.8 bits (220),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 49/98 (50%), Positives = 67/98 (68%), Gaps = 6/98 (6%)

Query  1   MLRQSVRPLTTANRA-LTRSFSALAPRMGEGDTGAPRPGGIQ-----SGDSFTRREAAQE  54
           MLRQ++    TA+R    RSFS  A RMGEGD+GAP+ GG       +G +F +REAA E
Sbjct  1   MLRQTLAKTATASRPVSARSFSVAARRMGEGDSGAPKGGGGGGSIRSAGGAFGKREAAHE  60

Query  55  SMYIHEKEKEKLAALKKKIQEQQEHLNELDKHLKELSR  92
             YI ++E EKLA LK+K+ EQ+EHL EL+ H++ ++R
Sbjct  61  EEYIRQREAEKLATLKEKLAEQREHLQELEHHIEAITR  98



Lambda      K        H        a         alpha
   0.309    0.126    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00017262

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428014 pfam04568, IATP, Mitochondrial ATPase inhibitor, IATP....  88.8    3e-25


>CDD:428014 pfam04568, IATP, Mitochondrial ATPase inhibitor, IATP.  ATP synthase 
inhibitor prevents the enzyme from switching to ATP 
hydrolysis during collapse of the electrochemical gradient, 
for example during oxygen deprivation ATP synthase inhibitor 
forms a one to one complex with the F1 ATPase, possibly by 
binding at the alpha-beta interface. It is thought to inhibit 
ATP synthesis by preventing the release of ATP. The minimum 
inhibitory region for bovine inhibitor is from residues 39 
to 72. The inhibitor has two oligomeric states, dimer (the 
active state) and tetramer. At low pH, the inhibitor forms a 
dimer via antiparallel coiled coil interactions between the 
C terminal regions of two monomers. At high pH, the inhibitor 
forms tetramers and higher oligomers by coiled coil interactions 
involving the N-terminus and inhibitory region, thus 
preventing the inhibitory activity.
Length=98

 Score = 88.8 bits (220),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 49/98 (50%), Positives = 67/98 (68%), Gaps = 6/98 (6%)

Query  1   MLRQSVRPLTTANRA-LTRSFSALAPRMGEGDTGAPRPGGIQ-----SGDSFTRREAAQE  54
           MLRQ++    TA+R    RSFS  A RMGEGD+GAP+ GG       +G +F +REAA E
Sbjct  1   MLRQTLAKTATASRPVSARSFSVAARRMGEGDSGAPKGGGGGGSIRSAGGAFGKREAAHE  60

Query  55  SMYIHEKEKEKLAALKKKIQEQQEHLNELDKHLKELSR  92
             YI ++E EKLA LK+K+ EQ+EHL EL+ H++ ++R
Sbjct  61  EEYIRQREAEKLATLKEKLAEQREHLQELEHHIEAITR  98



Lambda      K        H        a         alpha
   0.309    0.126    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00010635

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461540 pfam05064, Nsp1_C, Nsp1-like C-terminal region. This f...  170     3e-51


>CDD:461540 pfam05064, Nsp1_C, Nsp1-like C-terminal region.  This family 
probably forms a coiled-coil. This important region of Nsp1 
is involved in binding Nup82.
Length=114

 Score = 170 bits (434),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 52/110 (47%), Positives = 71/110 (65%), Gaps = 3/110 (3%)

Query  471  STVGPTPPAQSRLKNKTMDEIITRWATDLTKYQKEFREQAEKVAEWDRMLVENTAKVQKL  530
              V P P A   LKNKT+D+II +W+T L+K  KEF  QA KV EWDR+LVEN  K+ KL
Sbjct  4    KPVEPPPSA---LKNKTLDDIINKWSTQLSKQSKEFETQAAKVNEWDRVLVENGDKISKL  60

Query  531  YGSTVDADRATQEIERQLASVEGQQEELSSWLDRYEREVDEMMSKQVGPG  580
            Y  T++A++    I++QL  VE QQ+EL S LD YE +++E++       
Sbjct  61   YSETLEAEQDQNRIDQQLDYVESQQDELESLLDNYEEQLEELLGDITSQN  110



Lambda      K        H        a         alpha
   0.304    0.120    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00010636

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461540 pfam05064, Nsp1_C, Nsp1-like C-terminal region. This f...  170     3e-51


>CDD:461540 pfam05064, Nsp1_C, Nsp1-like C-terminal region.  This family 
probably forms a coiled-coil. This important region of Nsp1 
is involved in binding Nup82.
Length=114

 Score = 170 bits (434),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 52/110 (47%), Positives = 71/110 (65%), Gaps = 3/110 (3%)

Query  471  STVGPTPPAQSRLKNKTMDEIITRWATDLTKYQKEFREQAEKVAEWDRMLVENTAKVQKL  530
              V P P A   LKNKT+D+II +W+T L+K  KEF  QA KV EWDR+LVEN  K+ KL
Sbjct  4    KPVEPPPSA---LKNKTLDDIINKWSTQLSKQSKEFETQAAKVNEWDRVLVENGDKISKL  60

Query  531  YGSTVDADRATQEIERQLASVEGQQEELSSWLDRYEREVDEMMSKQVGPG  580
            Y  T++A++    I++QL  VE QQ+EL S LD YE +++E++       
Sbjct  61   YSETLEAEQDQNRIDQQLDYVESQQDELESLLDNYEEQLEELLGDITSQN  110



Lambda      K        H        a         alpha
   0.304    0.120    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00017263

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461540 pfam05064, Nsp1_C, Nsp1-like C-terminal region. This f...  170     3e-51


>CDD:461540 pfam05064, Nsp1_C, Nsp1-like C-terminal region.  This family 
probably forms a coiled-coil. This important region of Nsp1 
is involved in binding Nup82.
Length=114

 Score = 170 bits (434),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 52/110 (47%), Positives = 71/110 (65%), Gaps = 3/110 (3%)

Query  471  STVGPTPPAQSRLKNKTMDEIITRWATDLTKYQKEFREQAEKVAEWDRMLVENTAKVQKL  530
              V P P A   LKNKT+D+II +W+T L+K  KEF  QA KV EWDR+LVEN  K+ KL
Sbjct  4    KPVEPPPSA---LKNKTLDDIINKWSTQLSKQSKEFETQAAKVNEWDRVLVENGDKISKL  60

Query  531  YGSTVDADRATQEIERQLASVEGQQEELSSWLDRYEREVDEMMSKQVGPG  580
            Y  T++A++    I++QL  VE QQ+EL S LD YE +++E++       
Sbjct  61   YSETLEAEQDQNRIDQQLDYVESQQDELESLLDNYEEQLEELLGDITSQN  110



Lambda      K        H        a         alpha
   0.304    0.120    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00010637

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00017264

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461540 pfam05064, Nsp1_C, Nsp1-like C-terminal region. This f...  170     3e-51


>CDD:461540 pfam05064, Nsp1_C, Nsp1-like C-terminal region.  This family 
probably forms a coiled-coil. This important region of Nsp1 
is involved in binding Nup82.
Length=114

 Score = 170 bits (434),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 52/110 (47%), Positives = 71/110 (65%), Gaps = 3/110 (3%)

Query  471  STVGPTPPAQSRLKNKTMDEIITRWATDLTKYQKEFREQAEKVAEWDRMLVENTAKVQKL  530
              V P P A   LKNKT+D+II +W+T L+K  KEF  QA KV EWDR+LVEN  K+ KL
Sbjct  4    KPVEPPPSA---LKNKTLDDIINKWSTQLSKQSKEFETQAAKVNEWDRVLVENGDKISKL  60

Query  531  YGSTVDADRATQEIERQLASVEGQQEELSSWLDRYEREVDEMMSKQVGPG  580
            Y  T++A++    I++QL  VE QQ+EL S LD YE +++E++       
Sbjct  61   YSETLEAEQDQNRIDQQLDYVESQQDELESLLDNYEEQLEELLGDITSQN  110



Lambda      K        H        a         alpha
   0.304    0.120    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00010640

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00017265

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00010639

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00010641

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00010642

Length=247


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.126    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00010643

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435727 pfam17104, DUF5102, Domain of unknown function (DUF510...  343     4e-116


>CDD:435727 pfam17104, DUF5102, Domain of unknown function (DUF5102).  This 
is a family fungal sequences of no known function.
Length=291

 Score = 343 bits (883),  Expect = 4e-116, Method: Composition-based stats.
 Identities = 153/267 (57%), Positives = 174/267 (65%), Gaps = 17/267 (6%)

Query  303  QEPDGET----AEPELIEPQQPLPHPLASFP-----------DLHAALDQYLDKLYPTSK  347
            QEP+        E E   P QP P P    P           DL AAL+ YLD L+P S 
Sbjct  27   QEPEEAVGESPDEAEAPPPPQPPPPPTLPPPLLDFDSLDSLPDLLAALEPYLDTLFPPSW  86

Query  348  NVESLPPLEPIQDASSIFSTERSLSLWSQLVAPPPLQPQNWVKSRIRRLFLVSLGVPVDL  407
             +       PI D+SSIF TERSLSLWSQLVAPPPLQP NW +SRIRRLFLVSLGVPVDL
Sbjct  87   ELPIRSLPGPIPDSSSIFLTERSLSLWSQLVAPPPLQPPNWTRSRIRRLFLVSLGVPVDL  146

Query  408  DEILPASKQKKLVLPSINLSGSDTTGSAVHSRSHSQARKSGSQDGIDSPTTSAPTGRHRT  467
            DEILPASKQKKLVLPS+N+    ++     S     +R   S     S  +     +  +
Sbjct  147  DEILPASKQKKLVLPSLNIHTRPSSSPPGSSS--RVSRLKQSNASSTSVDSQGSASKSSS  204

Query  468  SRRRDRSPPPQLDLSAVRRLCATTDAALDGLTDAELRTHVKELEQVTLRASSVLEYWLKR  527
            SRRR   PPP+LDL A RRLCATTD ALDGLTD EL+ HV ELE +T RAS VLEYWLKR
Sbjct  205  SRRRGPPPPPELDLVAARRLCATTDEALDGLTDEELKRHVAELEALTARASEVLEYWLKR  264

Query  528  RDGLVSEREAFEGVIENLVNHARRVRK  554
            RD L+ ++EAFEGVIENLV HAR+VRK
Sbjct  265  RDELIGDKEAFEGVIENLVKHARKVRK  291



Lambda      K        H        a         alpha
   0.309    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690425736


Query= TCONS_00010644

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461470 pfam04900, Fcf1, Fcf1. Fcf1 is a nucleolar protein inv...  138     3e-43


>CDD:461470 pfam04900, Fcf1, Fcf1.  Fcf1 is a nucleolar protein involved 
in pre-rRNA processing. Depletion of yeast Fcf1 and Fcf2 leads 
to a decrease in synthesis of the 18S rRNA and results in 
a deficit in 40S ribosomal subunits.
Length=99

 Score = 138 bits (349),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 53/101 (52%), Positives = 62/101 (61%), Gaps = 6/101 (6%)

Query  90   DLLYAKCIPTFTDCTIAELEKLGPKFRLALRVAKDPRWNRLHCDHA--GTYADDCIVDRV  147
              L  K  P  T C IAELEKLGPKFR AL +AK  R+ R  C+H    T ADDCIV RV
Sbjct  1    KTLQGKVKPMITQCVIAELEKLGPKFRGALDIAK--RFERRRCNHPKKPTSADDCIVSRV  58

Query  148  MK--HRIYTVATNDKDLVRRIRKIPGVPIMKVARGKYVIER  186
                   Y VAT D+DL RR+RKIPGVP++ + R   V+E 
Sbjct  59   GPGNKHRYIVATQDRDLRRRLRKIPGVPLLYINRSVMVLEP  99



Lambda      K        H        a         alpha
   0.323    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00017266

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00010647

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461470 pfam04900, Fcf1, Fcf1. Fcf1 is a nucleolar protein inv...  138     3e-43


>CDD:461470 pfam04900, Fcf1, Fcf1.  Fcf1 is a nucleolar protein involved 
in pre-rRNA processing. Depletion of yeast Fcf1 and Fcf2 leads 
to a decrease in synthesis of the 18S rRNA and results in 
a deficit in 40S ribosomal subunits.
Length=99

 Score = 138 bits (349),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 53/101 (52%), Positives = 62/101 (61%), Gaps = 6/101 (6%)

Query  90   DLLYAKCIPTFTDCTIAELEKLGPKFRLALRVAKDPRWNRLHCDHA--GTYADDCIVDRV  147
              L  K  P  T C IAELEKLGPKFR AL +AK  R+ R  C+H    T ADDCIV RV
Sbjct  1    KTLQGKVKPMITQCVIAELEKLGPKFRGALDIAK--RFERRRCNHPKKPTSADDCIVSRV  58

Query  148  MK--HRIYTVATNDKDLVRRIRKIPGVPIMKVARGKYVIER  186
                   Y VAT D+DL RR+RKIPGVP++ + R   V+E 
Sbjct  59   GPGNKHRYIVATQDRDLRRRLRKIPGVPLLYINRSVMVLEP  99



Lambda      K        H        a         alpha
   0.323    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00010645

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461470 pfam04900, Fcf1, Fcf1. Fcf1 is a nucleolar protein inv...  82.2    7e-22


>CDD:461470 pfam04900, Fcf1, Fcf1.  Fcf1 is a nucleolar protein involved 
in pre-rRNA processing. Depletion of yeast Fcf1 and Fcf2 leads 
to a decrease in synthesis of the 18S rRNA and results in 
a deficit in 40S ribosomal subunits.
Length=99

 Score = 82.2 bits (204),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 34/60 (57%), Positives = 37/60 (62%), Gaps = 4/60 (7%)

Query  90   DLLYAKCIPTFTDCTIAELEKLGPKFRLALRVAKDPRWNRLHCDHA--GTYADDCIVDRV  147
              L  K  P  T C IAELEKLGPKFR AL +AK  R+ R  C+H    T ADDCIV RV
Sbjct  1    KTLQGKVKPMITQCVIAELEKLGPKFRGALDIAK--RFERRRCNHPKKPTSADDCIVSRV  58



Lambda      K        H        a         alpha
   0.323    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00010646

Length=45
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461470 pfam04900, Fcf1, Fcf1. Fcf1 is a nucleolar protein inv...  62.5    7e-16


>CDD:461470 pfam04900, Fcf1, Fcf1.  Fcf1 is a nucleolar protein involved 
in pre-rRNA processing. Depletion of yeast Fcf1 and Fcf2 leads 
to a decrease in synthesis of the 18S rRNA and results in 
a deficit in 40S ribosomal subunits.
Length=99

 Score = 62.5 bits (153),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  3   HRIYTVATNDKDLVRRIRKIPGVPIMKVARGKYVIER  39
              Y VAT D+DL RR+RKIPGVP++ + R   V+E 
Sbjct  63  KHRYIVATQDRDLRRRLRKIPGVPLLYINRSVMVLEP  99



Lambda      K        H        a         alpha
   0.326    0.144    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00010648

Length=995


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1272872524


Query= TCONS_00017267

Length=995


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1272872524


Query= TCONS_00010649

Length=995


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1272872524


Query= TCONS_00017268

Length=995


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1272872524


Query= TCONS_00017269

Length=995


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1272872524


Query= TCONS_00017270

Length=995


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1272872524


Query= TCONS_00010653

Length=995


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1272872524


Query= TCONS_00017272

Length=995


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1272872524


Query= TCONS_00017273

Length=995


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1272872524


Query= TCONS_00017271

Length=995


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1272872524


Query= TCONS_00010652

Length=995


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1272872524


Query= TCONS_00010651

Length=995


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1272872524


Query= TCONS_00010650

Length=995


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 1272872524


Query= TCONS_00010654

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00010655

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00017275

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  185     4e-57


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 185 bits (473),  Expect = 4e-57, Method: Composition-based stats.
 Identities = 70/162 (43%), Positives = 100/162 (62%), Gaps = 16/162 (10%)

Query  239  YTLVLSLEDLLVHSEWS-------------REHGWRIAKRPGVDYFLRYLNQYYELVLFT  285
             TLVL L++ LVHS +                HG  + KRPG+D FL+ L++YYE+V+FT
Sbjct  1    KTLVLDLDETLVHSSFEPPLKSDFILPVPGETHGGYVKKRPGLDEFLKELSKYYEIVIFT  60

Query  286  SVPSMMADQVLRKLDPYR-IIRWPLFREATRYKDGEYIKDLSYLNRDLSKVILIDTKEEH  344
            +     AD VL  LDP   +    L+RE+ +++DG Y+KDLS L RDLS+V+++D   + 
Sbjct  61   ASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVKDLSLLGRDLSRVVIVDNSPDS  120

Query  345  ARLQPENAIILDKWLGDPKDKNLVALIPFLEYIAGMGVEDVR  386
              LQP+N I +  + GDP D  L+ L+PFLE +A  GV+DVR
Sbjct  121  FLLQPDNGIPIPPFFGDPDDNELLKLLPFLEGLA--GVDDVR  160



Lambda      K        H        a         alpha
   0.314    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00010656

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  181     3e-57


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 181 bits (462),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 70/162 (43%), Positives = 100/162 (62%), Gaps = 16/162 (10%)

Query  80   YTLVLSLEDLLVHSEWS-------------REHGWRIAKRPGVDYFLRYLNQYYELVLFT  126
             TLVL L++ LVHS +                HG  + KRPG+D FL+ L++YYE+V+FT
Sbjct  1    KTLVLDLDETLVHSSFEPPLKSDFILPVPGETHGGYVKKRPGLDEFLKELSKYYEIVIFT  60

Query  127  SVPSMMADQVLRKLDPYR-IIRWPLFREATRYKDGEYIKDLSYLNRDLSKVILIDTKEEH  185
            +     AD VL  LDP   +    L+RE+ +++DG Y+KDLS L RDLS+V+++D   + 
Sbjct  61   ASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVKDLSLLGRDLSRVVIVDNSPDS  120

Query  186  ARLQPENAIILDKWLGDPKDKNLVALIPFLEYIAGMGVEDVR  227
              LQP+N I +  + GDP D  L+ L+PFLE +A  GV+DVR
Sbjct  121  FLLQPDNGIPIPPFFGDPDDNELLKLLPFLEGLA--GVDDVR  160



Lambda      K        H        a         alpha
   0.317    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00010657

Length=335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin proteas...  139     1e-41


>CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease.  Members 
of this family are found in proteasome regulatory subunits, 
eukaryotic initiation factor 3 (eIF3) subunits and regulators 
of transcription factors. This family is also known as 
the MPN domain and PAD-1-like domain, JABP1 domain or JAMM 
domain. These are metalloenzymes that function as the ubiquitin 
isopeptidase/ deubiquitinase in the ubiquitin-based signalling 
and protein turnover pathways in eukaryotes. Versions 
of the domain in prokaryotic cognates of the ubiquitin-modification 
pathway are shown to have a similar role, and the 
archael protein from Haloferax volcanii is found to cleave ubiquitin-like 
small archaeal modifier proteins (SAMP1/2) from 
protein conjugates.
Length=117

 Score = 139 bits (352),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 49/118 (42%), Positives = 70/118 (59%), Gaps = 5/118 (4%)

Query  30   DNSETVHISSLALLKMLRHGRAGVPM--EVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVS  87
             +  TV I  L LLK+L H   G  +  EVMG++LG+   + T+ + + FA+PQ  T   
Sbjct  1    SSVRTVIIHPLVLLKILDHANRGGKIGEEVMGVLLGKLEGDGTIEITNSFALPQEETEDD  60

Query  88   VEAVDPVFQ--TKMMEMLRQTGRPETVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPR  143
            V AV    +    M EML++  R E VVGWYH+HPG  CWLSSVD++T   ++++ P 
Sbjct  61   VNAVALDQEYMENMHEMLKKVNRKEEVVGWYHTHPGL-CWLSSVDVHTHALYQRMIPE  117



Lambda      K        H        a         alpha
   0.316    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00017276

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin proteas...  136     6e-43


>CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease.  Members 
of this family are found in proteasome regulatory subunits, 
eukaryotic initiation factor 3 (eIF3) subunits and regulators 
of transcription factors. This family is also known as 
the MPN domain and PAD-1-like domain, JABP1 domain or JAMM 
domain. These are metalloenzymes that function as the ubiquitin 
isopeptidase/ deubiquitinase in the ubiquitin-based signalling 
and protein turnover pathways in eukaryotes. Versions 
of the domain in prokaryotic cognates of the ubiquitin-modification 
pathway are shown to have a similar role, and the 
archael protein from Haloferax volcanii is found to cleave ubiquitin-like 
small archaeal modifier proteins (SAMP1/2) from 
protein conjugates.
Length=117

 Score = 136 bits (344),  Expect = 6e-43, Method: Composition-based stats.
 Identities = 48/114 (42%), Positives = 68/114 (60%), Gaps = 5/114 (4%)

Query  30   DNSETVHISSLALLKMLRHGRAGVPM--EVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVS  87
             +  TV I  L LLK+L H   G  +  EVMG++LG+   + T+ + + FA+PQ  T   
Sbjct  1    SSVRTVIIHPLVLLKILDHANRGGKIGEEVMGVLLGKLEGDGTIEITNSFALPQEETEDD  60

Query  88   VEAVDPVFQ--TKMMEMLRQTGRPETVVGWYHSHPGFGCWLSSVDINTQQSFEQ  139
            V AV    +    M EML++  R E VVGWYH+HPG  CWLSSVD++T   +++
Sbjct  61   VNAVALDQEYMENMHEMLKKVNRKEEVVGWYHTHPGL-CWLSSVDVHTHALYQR  113



Lambda      K        H        a         alpha
   0.320    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00010658

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  186     8e-57


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 186 bits (474),  Expect = 8e-57, Method: Composition-based stats.
 Identities = 70/162 (43%), Positives = 100/162 (62%), Gaps = 16/162 (10%)

Query  294  YTLVLSLEDLLVHSEWS-------------REHGWRIAKRPGVDYFLRYLNQYYELVLFT  340
             TLVL L++ LVHS +                HG  + KRPG+D FL+ L++YYE+V+FT
Sbjct  1    KTLVLDLDETLVHSSFEPPLKSDFILPVPGETHGGYVKKRPGLDEFLKELSKYYEIVIFT  60

Query  341  SVPSMMADQVLRKLDPYR-IIRWPLFREATRYKDGEYIKDLSYLNRDLSKVILIDTKEEH  399
            +     AD VL  LDP   +    L+RE+ +++DG Y+KDLS L RDLS+V+++D   + 
Sbjct  61   ASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVKDLSLLGRDLSRVVIVDNSPDS  120

Query  400  ARLQPENAIILDKWLGDPKDKNLVALIPFLEYIAGMGVEDVR  441
              LQP+N I +  + GDP D  L+ L+PFLE +A  GV+DVR
Sbjct  121  FLLQPDNGIPIPPFFGDPDDNELLKLLPFLEGLA--GVDDVR  160



Lambda      K        H        a         alpha
   0.314    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00010659

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  186     8e-57


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 186 bits (474),  Expect = 8e-57, Method: Composition-based stats.
 Identities = 70/162 (43%), Positives = 100/162 (62%), Gaps = 16/162 (10%)

Query  294  YTLVLSLEDLLVHSEWS-------------REHGWRIAKRPGVDYFLRYLNQYYELVLFT  340
             TLVL L++ LVHS +                HG  + KRPG+D FL+ L++YYE+V+FT
Sbjct  1    KTLVLDLDETLVHSSFEPPLKSDFILPVPGETHGGYVKKRPGLDEFLKELSKYYEIVIFT  60

Query  341  SVPSMMADQVLRKLDPYR-IIRWPLFREATRYKDGEYIKDLSYLNRDLSKVILIDTKEEH  399
            +     AD VL  LDP   +    L+RE+ +++DG Y+KDLS L RDLS+V+++D   + 
Sbjct  61   ASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVKDLSLLGRDLSRVVIVDNSPDS  120

Query  400  ARLQPENAIILDKWLGDPKDKNLVALIPFLEYIAGMGVEDVR  441
              LQP+N I +  + GDP D  L+ L+PFLE +A  GV+DVR
Sbjct  121  FLLQPDNGIPIPPFFGDPDDNELLKLLPFLEGLA--GVDDVR  160



Lambda      K        H        a         alpha
   0.314    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00010660

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00017278

Length=182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  101     3e-28


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 101 bits (253),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 18/110 (16%)

Query  80   YTLVLSLEDLLVHSEWS-------------REHGWRIAKRPGVDYFLRYLNQYYELVLFT  126
             TLVL L++ LVHS +                HG  + KRPG+D FL+ L++YYE+V+FT
Sbjct  1    KTLVLDLDETLVHSSFEPPLKSDFILPVPGETHGGYVKKRPGLDEFLKELSKYYEIVIFT  60

Query  127  SVPSMMADQVLRKLDPYR-IIRWPLFREATRYKDGEYIK----VGQDSSD  171
            +     AD VL  LDP   +    L+RE+ +++DG Y+K    +G+D S 
Sbjct  61   ASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVKDLSLLGRDLSR  110



Lambda      K        H        a         alpha
   0.321    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00010661

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  185     4e-57


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 185 bits (473),  Expect = 4e-57, Method: Composition-based stats.
 Identities = 70/162 (43%), Positives = 100/162 (62%), Gaps = 16/162 (10%)

Query  239  YTLVLSLEDLLVHSEWS-------------REHGWRIAKRPGVDYFLRYLNQYYELVLFT  285
             TLVL L++ LVHS +                HG  + KRPG+D FL+ L++YYE+V+FT
Sbjct  1    KTLVLDLDETLVHSSFEPPLKSDFILPVPGETHGGYVKKRPGLDEFLKELSKYYEIVIFT  60

Query  286  SVPSMMADQVLRKLDPYR-IIRWPLFREATRYKDGEYIKDLSYLNRDLSKVILIDTKEEH  344
            +     AD VL  LDP   +    L+RE+ +++DG Y+KDLS L RDLS+V+++D   + 
Sbjct  61   ASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVKDLSLLGRDLSRVVIVDNSPDS  120

Query  345  ARLQPENAIILDKWLGDPKDKNLVALIPFLEYIAGMGVEDVR  386
              LQP+N I +  + GDP D  L+ L+PFLE +A  GV+DVR
Sbjct  121  FLLQPDNGIPIPPFFGDPDDNELLKLLPFLEGLA--GVDDVR  160



Lambda      K        H        a         alpha
   0.314    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00010662

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  181     3e-57


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 181 bits (462),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 70/162 (43%), Positives = 100/162 (62%), Gaps = 16/162 (10%)

Query  80   YTLVLSLEDLLVHSEWS-------------REHGWRIAKRPGVDYFLRYLNQYYELVLFT  126
             TLVL L++ LVHS +                HG  + KRPG+D FL+ L++YYE+V+FT
Sbjct  1    KTLVLDLDETLVHSSFEPPLKSDFILPVPGETHGGYVKKRPGLDEFLKELSKYYEIVIFT  60

Query  127  SVPSMMADQVLRKLDPYR-IIRWPLFREATRYKDGEYIKDLSYLNRDLSKVILIDTKEEH  185
            +     AD VL  LDP   +    L+RE+ +++DG Y+KDLS L RDLS+V+++D   + 
Sbjct  61   ASSKEYADPVLDILDPNGKLFSHRLYRESCKFEDGVYVKDLSLLGRDLSRVVIVDNSPDS  120

Query  186  ARLQPENAIILDKWLGDPKDKNLVALIPFLEYIAGMGVEDVR  227
              LQP+N I +  + GDP D  L+ L+PFLE +A  GV+DVR
Sbjct  121  FLLQPDNGIPIPPFFGDPDDNELLKLLPFLEGLA--GVDDVR  160



Lambda      K        H        a         alpha
   0.317    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00017279

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  64.8    3e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 64.8 bits (158),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 82/260 (32%), Gaps = 55/260 (21%)

Query  215  DLFFMFYHPFLPFLDR--------QRAPDDYYSVSPLLFWTIISVGAR---------RYQ  257
            DLFF  +HP  P L R        +         SPLL   I+++GA             
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSS  61

Query  258  TDTHLLNSLAGPVTRLVWSTLADIPQSYH--VVKALCLLCSWPFPTSSTSTDPTFMLCGM  315
                  + +   +  L+         S    +++AL LL  +   T        +   G+
Sbjct  62   LTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLH--WRYHGL  119

Query  316  MMQVAMQLGLHR-PSHTQDFSKFRVELIEEELRDKVRTWAICNVVAQRYVRILLLSWTSA  374
             +++A  LGLHR PS+     K  +E   E  R   R +                 W   
Sbjct  120  AIRLARSLGLHRDPSYVSPSWKLWIEEA-ELRR---RLF-----------------WACF  158

Query  375  LTDSSVATGYGQPPSTLYDWTLSASGSVDPNFKLPEDIRRRLDVEIFCDKVTKTLYTNRR  434
              D  ++   G+PP  L D  +           LP D     D+         TL     
Sbjct  159  YLDRLISLILGRPP-LLSDSDIDLP--------LPCDDD---DLWESDSADEVTLPLISL  206

Query  435  DPVGLCSDQERSTLISFLSR  454
            +   +        L   LS+
Sbjct  207  ESKSIKPPLFLIKLSKILSK  226



Lambda      K        H        a         alpha
   0.319    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00010663

Length=711
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  63.3    2e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 63.3 bits (154),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 82/260 (32%), Gaps = 55/260 (21%)

Query  215  DLFFMFYHPFLPFLDR--------QRAPDDYYSVSPLLFWTIISVGAR---------RYQ  257
            DLFF  +HP  P L R        +         SPLL   I+++GA             
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSS  61

Query  258  TDTHLLNSLAGPVTRLVWSTLADIPQSYH--VVKALCLLCSWPFPTSSTSTDPTFMLCGM  315
                  + +   +  L+         S    +++AL LL  +   T        +   G+
Sbjct  62   LTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLH--WRYHGL  119

Query  316  MMQVAMQLGLHR-PSHTQDFSKFRVELIEEELRDKVRTWAICNVVAQRYVRILLLSWTSA  374
             +++A  LGLHR PS+     K  +E   E  R   R +                 W   
Sbjct  120  AIRLARSLGLHRDPSYVSPSWKLWIEEA-ELRR---RLF-----------------WACF  158

Query  375  LTDSSVATGYGQPPSTLYDWTLSASGSVDPNFKLPEDIRRRLDVEIFCDKVTKTLYTNRR  434
              D  ++   G+PP  L D  +           LP D     D+         TL     
Sbjct  159  YLDRLISLILGRPP-LLSDSDIDLP--------LPCDDD---DLWESDSADEVTLPLISL  206

Query  435  DPVGLCSDQERSTLISFLSR  454
            +   +        L   LS+
Sbjct  207  ESKSIKPPLFLIKLSKILSK  226



Lambda      K        H        a         alpha
   0.320    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 911420220


Query= TCONS_00017280

Length=974


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1243139128


Query= TCONS_00010664

Length=732
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  65.2    4e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 65.2 bits (159),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 83/243 (34%), Gaps = 38/243 (16%)

Query  215  DLFFMFYHPFLPFLDR--------QRAPDDYYSVSPLLFWTIISVGAR---------RYQ  257
            DLFF  +HP  P L R        +         SPLL   I+++GA             
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSS  61

Query  258  TDTHLLNSLAGPVTRLVWSTLADIPQSYH--VVKALCLLCSWPFPTSSTSTDPTFMLCGM  315
                  + +   +  L+         S    +++AL LL  +   T        +   G+
Sbjct  62   LTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLH--WRYHGL  119

Query  316  MMQVAMQLGLHR-PSHTQDFSKFRVELIEEELRDKVRTWAICNVVAQRVATGYGQPPSTL  374
             +++A  LGLHR PS+     K  +E   E  R   R +  C  + + ++   G+PP  L
Sbjct  120  AIRLARSLGLHRDPSYVSPSWKLWIEEA-ELRR---RLFWACFYLDRLISLILGRPP-LL  174

Query  375  YDWTLSASGSVDPNFKLPEDIRRRLDVEIFCDKVTKTLYTNRRDPVGLCSDQERSTLISF  434
             D  +           LP D     D+         TL     +   +        L   
Sbjct  175  SDSDIDLP--------LPCDDD---DLWESDSADEVTLPLISLESKSIKPPLFLIKLSKI  223

Query  435  LSR  437
            LS+
Sbjct  224  LSK  226



Lambda      K        H        a         alpha
   0.318    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 928386976


Query= TCONS_00010666

Length=920
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  64.0    1e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 64.0 bits (156),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 82/260 (32%), Gaps = 55/260 (21%)

Query  386  DLFFMFYHPFLPFLDR--------QRAPDDYYSVSPLLFWTIISVGAR---------RYQ  428
            DLFF  +HP  P L R        +         SPLL   I+++GA             
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSS  61

Query  429  TDTHLLNSLAGPVTRLVWSTLADIPQSYH--VVKALCLLCSWPFPTSSTSTDPTFMLCGM  486
                  + +   +  L+         S    +++AL LL  +   T        +   G+
Sbjct  62   LTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLH--WRYHGL  119

Query  487  MMQVAMQLGLHR-PSHTQDFSKFRVELIEEELRDKVRTWAICNVVAQRYVRILLLSWTSA  545
             +++A  LGLHR PS+     K  +E   E  R   R +                 W   
Sbjct  120  AIRLARSLGLHRDPSYVSPSWKLWIEEA-ELRR---RLF-----------------WACF  158

Query  546  LTDSSVATGYGQPPSTLYDWTLSASGSVDPNFKLPEDIRRRLDVEIFCDKVTKTLYTNRR  605
              D  ++   G+PP  L D  +           LP D     D+         TL     
Sbjct  159  YLDRLISLILGRPP-LLSDSDIDLP--------LPCDDD---DLWESDSADEVTLPLISL  206

Query  606  DPVGLCSDQERSTLISFLSR  625
            +   +        L   LS+
Sbjct  207  ESKSIKPPLFLIKLSKILSK  226



Lambda      K        H        a         alpha
   0.318    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00017281

Length=384


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00010667

Length=384


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00010668

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00010669

Length=628
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  222     3e-69
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            143     2e-39


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 222 bits (567),  Expect = 3e-69, Method: Composition-based stats.
 Identities = 83/290 (29%), Positives = 127/290 (44%), Gaps = 74/290 (26%)

Query  113  YILLEKMGDGAFSNVYRAKD-TTGEHDEVAIKVVRKFEMNSHQRANILKEVQIMRQLDHP  171
            Y +L K+G G+F  VY+AK   TG+   VAIK ++K ++   +  NIL+E++I+++L+HP
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKI--VAIKKIKKEKIKKKKDKNILREIKILKKLNHP  58

Query  172  NIVKLIEFSESRQYYYIVLELCPGGELFHQIVRLTYFSEDLSRHVIVQVAKAIEYLHETS  231
            NIV+L +  E +   Y+VLE   GG LF  +     FSE  ++ ++ Q+ + +E      
Sbjct  59   NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES-----  113

Query  232  GVVHRDIKPENLLFYPIPFVPSKNPRPVQPGDEEKVDEGEFIPGVGSGGIGTIKIADFGL  291
                                                                        
Sbjct       ------------------------------------------------------------  

Query  292  SKVIWDSQTMTPCGTVGYTAPEIVKDERYSKSVDMWALGCVLYTLLCGFPPFYDESIQVL  351
                  S   T  GT  Y APE++    Y   VD+W+LGC+LY LL G PPF   +   +
Sbjct  114  -----GSSLTTFVGTPWYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEI  168

Query  352  TEKVARGQYTFLSPWWDDISKSAQDLISHLLTVDPEKRYSIKEFLAHPWI  401
             E +    Y F      ++S+ A+DL+  LL  DP KR +  + L HPW 
Sbjct  169  YELIIDQPYAF-PELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 143 bits (364),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 126/294 (43%), Gaps = 65/294 (22%)

Query  114  ILLEKMGDGAFSNVYRAK---DTTGEHDEVAIKVVRKFEMNSHQRANILKEVQIMRQLDH  170
             L EK+G+GAF  VY+     +      +VA+K +++      +    L+E  IM++LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERED-FLEEASIMKKLDH  60

Query  171  PNIVKLIEFSESRQYYYIVLELCPGGELFHQIVRLTYFSEDLSR-------HVIVQVAKA  223
            PNIVKL+      +  YIV E  PGG+L      L +  +   +        + +Q+AK 
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDL------LDFLRKHKRKLTLKDLLSMALQIAKG  114

Query  224  IEYLHETSGVVHRDIKPENLLFYPIPFVPSKNPRPVQPGDEEKVDEGEFIPGVGSGGIGT  283
            +EYL      VHRD+   N L                      V E              
Sbjct  115  MEYLES-KNFVHRDLAARNCL----------------------VSEN-----------LV  140

Query  284  IKIADFGLSKVIWDSQTMTPCGT----VGYTAPEIVKDERYSKSVDMWALGCVLYTLLC-  338
            +KI+DFGLS+ I+D       G     + + APE +KD +++   D+W+ G +L+ +   
Sbjct  141  VKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTL  200

Query  339  GFPPFYDESIQVLTEKVARGQYTFLSP---WWDDISKSAQDLISHLLTVDPEKR  389
            G  P+   S + + E +  G    L       D++     DL+      DPE R
Sbjct  201  GEQPYPGMSNEEVLEFLEDGYR--LPQPENCPDEL----YDLMKQCWAYDPEDR  248



Lambda      K        H        a         alpha
   0.315    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789012650


Query= TCONS_00010670

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  214     3e-66
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            137     4e-37


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 214 bits (548),  Expect = 3e-66, Method: Composition-based stats.
 Identities = 85/307 (28%), Positives = 128/307 (42%), Gaps = 91/307 (30%)

Query  113  YILLEKMGDGAFSNVYRAKD-TTGEHDEVAIKVVRKFEMNSHQHDAHLHPNFRKKPKAAE  171
            Y +L K+G G+F  VY+AK   TG+   VAIK ++K                 +K K  +
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKI--VAIKKIKK-----------------EKIKKKK  41

Query  172  RANILKEVQIMRQLDHPNIVKLIEFSESRQYYYIVLELCPGGELFHQIVRLTYFSEDLSR  231
              NIL+E++I+++L+HPNIV+L +  E +   Y+VLE   GG LF  +     FSE  ++
Sbjct  42   DKNILREIKILKKLNHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAK  101

Query  232  HVIVQVAKAIEYLHETSGVVHRDIKPENLLFYPIPFVPSKNPRPVQPGDEEKVDEGEFIP  291
             ++ Q+ + +E                                                 
Sbjct  102  FIMKQILEGLES------------------------------------------------  113

Query  292  GVGSGGIGTIKIADFGLSKVIWDSQTMTPCGTVGYTAPEIVKDERYSKSVDMWALGCVLY  351
                                   S   T  GT  Y APE++    Y   VD+W+LGC+LY
Sbjct  114  ----------------------GSSLTTFVGTPWYMAPEVLGGNPYGPKVDVWSLGCILY  151

Query  352  TLLCGFPPFYDESIQVLTEKVARGQYTFLSPWWDDISKSAQDLISHLLTVDPEKRYSIKE  411
             LL G PPF   +   + E +    Y F      ++S+ A+DL+  LL  DP KR +  +
Sbjct  152  ELLTGKPPFPGINGNEIYELIIDQPYAF-PELPSNLSEEAKDLLKKLLKKDPSKRLTATQ  210

Query  412  FLAHPWI  418
             L HPW 
Sbjct  211  ALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 137 bits (347),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 81/311 (26%), Positives = 127/311 (41%), Gaps = 82/311 (26%)

Query  114  ILLEKMGDGAFSNVYRAK---DTTGEHDEVAIKVVRKFEMNSHQHDAHLHPNFRKKPKAA  170
             L EK+G+GAF  VY+     +      +VA+K +++      + D              
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERED--------------  47

Query  171  ERANILKEVQIMRQLDHPNIVKLIEFSESRQYYYIVLELCPGGELFHQIVRLTYFSEDLS  230
                 L+E  IM++LDHPNIVKL+      +  YIV E  PGG+L      L +  +   
Sbjct  48   ----FLEEASIMKKLDHPNIVKLLGVCTQGEPLYIVTEYMPGGDL------LDFLRKHKR  97

Query  231  R-------HVIVQVAKAIEYLHETSGVVHRDIKPENLLFYPIPFVPSKNPRPVQPGDEEK  283
            +        + +Q+AK +EYL      VHRD+   N L                      
Sbjct  98   KLTLKDLLSMALQIAKGMEYLES-KNFVHRDLAARNCL----------------------  134

Query  284  VDEGEFIPGVGSGGIGTIKIADFGLSKVIWDSQTMTPCGT----VGYTAPEIVKDERYSK  339
            V E              +KI+DFGLS+ I+D       G     + + APE +KD +++ 
Sbjct  135  VSEN-----------LVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLKDGKFTS  183

Query  340  SVDMWALGCVLYTLLC-GFPPFYDESIQVLTEKVARGQYTFLSP---WWDDISKSAQDLI  395
              D+W+ G +L+ +   G  P+   S + + E +  G    L       D++     DL+
Sbjct  184  KSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYR--LPQPENCPDEL----YDLM  237

Query  396  SHLLTVDPEKR  406
                  DPE R
Sbjct  238  KQCWAYDPEDR  248



Lambda      K        H        a         alpha
   0.315    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0742    0.140     1.90     42.6     43.6 

Effective search space used: 814084080


Query= TCONS_00010671

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00010672

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00010673

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00010674

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase          132     6e-37


>CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase.  
Length=404

 Score = 132 bits (335),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 52/220 (24%), Positives = 83/220 (38%), Gaps = 38/220 (17%)

Query  38   SDAECDVFDMIKTAAMAVNPCFDIYEINLMCPLAWDVLAFPTELVYQPAGATVYFDREDV  97
             + +C       +  +      + Y I   C              Y  + A  Y +R +V
Sbjct  220  LNTKCANLVENASKCIVSFGGINPYNIYTPC----STDTCGGYDPYDTSYAEKYLNRPEV  275

Query  98   KRALHAPS--IKWAECADEAVFVGGSGGPEQEGDFSANPIEHVLPQVIEATNRVLVSNGD  155
            ++ALH      KW EC D+ VF           D     +  ++P ++E   RVL+ +GD
Sbjct  276  RKALHVNDSVGKWEECNDD-VF-------NWLYDDIMKSMIPIVPNLLEGGLRVLIYSGD  327

Query  156  YDMIILTNGTLLAIQNMTWHGQLGFQSAPSTPITITLPDLHYADVYAENQMTGVDGAQGV  215
             D+I    GT   I+ + W G+  F+    +P                     VDG Q  
Sbjct  328  VDLICNYLGTEAWIKALNWSGKDDFRPWMVSP---------------------VDG-QVA  365

Query  216  MGVQHYERGLMWAETYQSGHMQPQYQPRVTYRHLQ-WLLG  254
              V+ Y   L +A    +GHM P+ QP    +  Q ++ G
Sbjct  366  GYVKTY-GNLTFATVKGAGHMVPEDQPEEALQMFQRFISG  404



Lambda      K        H        a         alpha
   0.321    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00017285

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00017284

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00017286

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00010675

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00010676

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00010677

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00010680

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            106     6e-26


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 106 bits (266),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 72/341 (21%), Positives = 132/341 (39%), Gaps = 9/341 (3%)

Query  132  SFMGLFASLGLVNTIGTFQAYLQDHQLKEYSPGNVGWIFGVYSFLTFFCGVQIGPVFDAK  191
                  A+LG           L +      SP  +G +  ++S          G + D  
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAEDL--GISPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  192  GPRFLVLAGSILVMVMMIALGFCTKYWHFMLVIGIAGGTGTSLIFTPAISAVGHFF-NEK  250
            G R ++L G +L  + ++ L F +  W  +LV+ +  G G   +F  A++ +  +F  E+
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLW-LLLVLRVLQGLGAGALFPAALALIADWFPPEE  118

Query  251  RGVATGLAATGGSVGGIVFPLVLETLFPKIGWAWATRVIALICLILLIGSCLLVKSRLPK  310
            RG A GL + G  +G  + PL+   L    GW  A  ++A++ L+  +   L       K
Sbjct  119  RGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  311  KPASKENVLPDFW----IFRDAKFAFTTAGIFFIEWGLFVPISYISSYALAHGVSTKLSY  366
            +P   E                   +    +    +  F  ++Y+  Y    G+S  L+ 
Sbjct  179  RPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAG  238

Query  367  QMVAFLNVGSVLGRAIPGFIADFLGRFNALIVTVALCLLCNACL-WLPAGGNVPLMIVYC  425
             ++    +   +GR + G ++D LGR   L++ + L +L    L  L    +   +++  
Sbjct  239  LLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL  298

Query  426  VIFGFASGSNISLTPVCIGQLCKIENYGRYYATAYTIVSFG  466
            ++ GF  G         +  L   E  G       T  S G
Sbjct  299  LLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLG  339



Lambda      K        H        a         alpha
   0.323    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00010684

Length=1337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  120     1e-32
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  112     1e-29
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  76.1    2e-17


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 120 bits (304),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 13/116 (11%)

Query  874  GDPFRLRQIILNLVGNAIKFTEH-GEVKLTIRKSDREQCAPNEYAFEFSVSDTGIGIEED  932
            GD  RLRQ++ NL+ NA+K     GE+ +T+ +               +V D GIGI  +
Sbjct  1    GDELRLRQVLSNLLDNALKHAAKAGEITVTLSEGGE---------LTLTVEDNGIGIPPE  51

Query  933  KLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT  988
             L  IF+ F  AD    R  GGTGLGLSI ++LV L+GG + V SE G G+T   T
Sbjct  52   DLPRIFEPFSTAD---KRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLT  104


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 112 bits (282),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 39/115 (34%), Positives = 69/115 (60%), Gaps = 5/115 (4%)

Query  1147  ILLAEDNDVNQKLAVKILEKHNHNVSVVGNGLEAVEAVKKRRYDVILMDVQMPVMGGFEA  1206
             +L+ +D+ + ++L  ++LEK  + V+   +G EA+E +K+ R D+IL+D+ MP M G E 
Sbjct  1     VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLKEERPDLILLDINMPGMDGLEL  60

Query  1207  TGKIREYEREAGLSRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMMQTI  1261
               +IR  +       TP+I LTAH    D  + ++A  D++LSKP   ++++  I
Sbjct  61    LKRIRRRDPT-----TPVIILTAHGDEDDAVEALEAGADDFLSKPFDPDELLAAI  110


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 76.1 bits (188),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 1/66 (2%)

Query  762  KSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYTREMLNVVHNLANSLLTIIDDILDI  821
            KSEFLAN+SHE+RTP+  I G  +L L  + L    RE L  +   A  LL +I+D+LD+
Sbjct  2    KSEFLANLSHELRTPLTAIRGYLEL-LRDEKLDEEQREYLETILRSAERLLRLINDLLDL  60

Query  822  SKIEAN  827
            S+IEA 
Sbjct  61   SRIEAG  66



Lambda      K        H        a         alpha
   0.315    0.131    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1705607400


Query= TCONS_00010681

Length=1337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  120     1e-32
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  112     1e-29
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  76.1    2e-17


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 120 bits (304),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 13/116 (11%)

Query  874  GDPFRLRQIILNLVGNAIKFTEH-GEVKLTIRKSDREQCAPNEYAFEFSVSDTGIGIEED  932
            GD  RLRQ++ NL+ NA+K     GE+ +T+ +               +V D GIGI  +
Sbjct  1    GDELRLRQVLSNLLDNALKHAAKAGEITVTLSEGGE---------LTLTVEDNGIGIPPE  51

Query  933  KLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT  988
             L  IF+ F  AD    R  GGTGLGLSI ++LV L+GG + V SE G G+T   T
Sbjct  52   DLPRIFEPFSTAD---KRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLT  104


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 112 bits (282),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 39/115 (34%), Positives = 69/115 (60%), Gaps = 5/115 (4%)

Query  1147  ILLAEDNDVNQKLAVKILEKHNHNVSVVGNGLEAVEAVKKRRYDVILMDVQMPVMGGFEA  1206
             +L+ +D+ + ++L  ++LEK  + V+   +G EA+E +K+ R D+IL+D+ MP M G E 
Sbjct  1     VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLKEERPDLILLDINMPGMDGLEL  60

Query  1207  TGKIREYEREAGLSRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMMQTI  1261
               +IR  +       TP+I LTAH    D  + ++A  D++LSKP   ++++  I
Sbjct  61    LKRIRRRDPT-----TPVIILTAHGDEDDAVEALEAGADDFLSKPFDPDELLAAI  110


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 76.1 bits (188),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 1/66 (2%)

Query  762  KSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYTREMLNVVHNLANSLLTIIDDILDI  821
            KSEFLAN+SHE+RTP+  I G  +L L  + L    RE L  +   A  LL +I+D+LD+
Sbjct  2    KSEFLANLSHELRTPLTAIRGYLEL-LRDEKLDEEQREYLETILRSAERLLRLINDLLDL  60

Query  822  SKIEAN  827
            S+IEA 
Sbjct  61   SRIEAG  66



Lambda      K        H        a         alpha
   0.315    0.131    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1705607400


Query= TCONS_00010682

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            106     6e-26


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 106 bits (266),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 72/341 (21%), Positives = 132/341 (39%), Gaps = 9/341 (3%)

Query  132  SFMGLFASLGLVNTIGTFQAYLQDHQLKEYSPGNVGWIFGVYSFLTFFCGVQIGPVFDAK  191
                  A+LG           L +      SP  +G +  ++S          G + D  
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAEDL--GISPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  192  GPRFLVLAGSILVMVMMIALGFCTKYWHFMLVIGIAGGTGTSLIFTPAISAVGHFF-NEK  250
            G R ++L G +L  + ++ L F +  W  +LV+ +  G G   +F  A++ +  +F  E+
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLW-LLLVLRVLQGLGAGALFPAALALIADWFPPEE  118

Query  251  RGVATGLAATGGSVGGIVFPLVLETLFPKIGWAWATRVIALICLILLIGSCLLVKSRLPK  310
            RG A GL + G  +G  + PL+   L    GW  A  ++A++ L+  +   L       K
Sbjct  119  RGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  311  KPASKENVLPDFW----IFRDAKFAFTTAGIFFIEWGLFVPISYISSYALAHGVSTKLSY  366
            +P   E                   +    +    +  F  ++Y+  Y    G+S  L+ 
Sbjct  179  RPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAG  238

Query  367  QMVAFLNVGSVLGRAIPGFIADFLGRFNALIVTVALCLLCNACL-WLPAGGNVPLMIVYC  425
             ++    +   +GR + G ++D LGR   L++ + L +L    L  L    +   +++  
Sbjct  239  LLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL  298

Query  426  VIFGFASGSNISLTPVCIGQLCKIENYGRYYATAYTIVSFG  466
            ++ GF  G         +  L   E  G       T  S G
Sbjct  299  LLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLG  339



Lambda      K        H        a         alpha
   0.323    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00010683

Length=1337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  120     1e-32
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  112     1e-29
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  76.1    2e-17


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 120 bits (304),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 13/116 (11%)

Query  874  GDPFRLRQIILNLVGNAIKFTEH-GEVKLTIRKSDREQCAPNEYAFEFSVSDTGIGIEED  932
            GD  RLRQ++ NL+ NA+K     GE+ +T+ +               +V D GIGI  +
Sbjct  1    GDELRLRQVLSNLLDNALKHAAKAGEITVTLSEGGE---------LTLTVEDNGIGIPPE  51

Query  933  KLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTFHFT  988
             L  IF+ F  AD    R  GGTGLGLSI ++LV L+GG + V SE G G+T   T
Sbjct  52   DLPRIFEPFSTAD---KRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLT  104


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 112 bits (282),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 39/115 (34%), Positives = 69/115 (60%), Gaps = 5/115 (4%)

Query  1147  ILLAEDNDVNQKLAVKILEKHNHNVSVVGNGLEAVEAVKKRRYDVILMDVQMPVMGGFEA  1206
             +L+ +D+ + ++L  ++LEK  + V+   +G EA+E +K+ R D+IL+D+ MP M G E 
Sbjct  1     VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLKEERPDLILLDINMPGMDGLEL  60

Query  1207  TGKIREYEREAGLSRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQMMQTI  1261
               +IR  +       TP+I LTAH    D  + ++A  D++LSKP   ++++  I
Sbjct  61    LKRIRRRDPT-----TPVIILTAHGDEDDAVEALEAGADDFLSKPFDPDELLAAI  110


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 76.1 bits (188),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 1/66 (2%)

Query  762  KSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYTREMLNVVHNLANSLLTIIDDILDI  821
            KSEFLAN+SHE+RTP+  I G  +L L  + L    RE L  +   A  LL +I+D+LD+
Sbjct  2    KSEFLANLSHELRTPLTAIRGYLEL-LRDEKLDEEQREYLETILRSAERLLRLINDLLDL  60

Query  822  SKIEAN  827
            S+IEA 
Sbjct  61   SRIEAG  66



Lambda      K        H        a         alpha
   0.315    0.131    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1705607400


Query= TCONS_00010686

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease. This f...  57.0    4e-11


>CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease.  This family 
of proteins are related to pfam00665 and are probably endonucleases 
of the DDE superfamily. Transposase proteins are necessary 
for efficient DNA transposition. This domain is a member 
of the DDE superfamily, which contain three carboxylate 
residues that are believed to be responsible for coordinating 
metal ions needed for catalysis. The catalytic activity of 
this enzyme involves DNA cleavage at a specific site followed 
by a strand transfer reaction. Interestingly this family 
also includes the CENP-B protein. This domain in that protein 
appears to have lost the metal binding residues and is unlikely 
to have endonuclease activity. Centromere Protein B (CENP-B) 
is a DNA-binding protein localized to the centromere.
Length=177

 Score = 57.0 bits (138),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query  1    MPPHTSHLLQPLDVGVFGPLKRSYGKLVEGMMVAGNNHINKE-------DFLHLYPPAQD  53
            +P +++ +LQPLD GV    K +Y +     ++AGNN ++         D L     A +
Sbjct  107  LPANSTSILQPLDQGVVSTFKANYRRQWLQYLLAGNNLLSPPWKKLTLLDALKWIAKAWN  166

Query  54   KVFNQANICNGF  65
             V + + I +GF
Sbjct  167  AV-SPSTITSGF  177



Lambda      K        H        a         alpha
   0.318    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00010685

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease. This f...  57.0    4e-11


>CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease.  This family 
of proteins are related to pfam00665 and are probably endonucleases 
of the DDE superfamily. Transposase proteins are necessary 
for efficient DNA transposition. This domain is a member 
of the DDE superfamily, which contain three carboxylate 
residues that are believed to be responsible for coordinating 
metal ions needed for catalysis. The catalytic activity of 
this enzyme involves DNA cleavage at a specific site followed 
by a strand transfer reaction. Interestingly this family 
also includes the CENP-B protein. This domain in that protein 
appears to have lost the metal binding residues and is unlikely 
to have endonuclease activity. Centromere Protein B (CENP-B) 
is a DNA-binding protein localized to the centromere.
Length=177

 Score = 57.0 bits (138),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query  1    MPPHTSHLLQPLDVGVFGPLKRSYGKLVEGMMVAGNNHINKE-------DFLHLYPPAQD  53
            +P +++ +LQPLD GV    K +Y +     ++AGNN ++         D L     A +
Sbjct  107  LPANSTSILQPLDQGVVSTFKANYRRQWLQYLLAGNNLLSPPWKKLTLLDALKWIAKAWN  166

Query  54   KVFNQANICNGF  65
             V + + I +GF
Sbjct  167  AV-SPSTITSGF  177



Lambda      K        H        a         alpha
   0.318    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00017287

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease. This f...  57.0    7e-11


>CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease.  This family 
of proteins are related to pfam00665 and are probably endonucleases 
of the DDE superfamily. Transposase proteins are necessary 
for efficient DNA transposition. This domain is a member 
of the DDE superfamily, which contain three carboxylate 
residues that are believed to be responsible for coordinating 
metal ions needed for catalysis. The catalytic activity of 
this enzyme involves DNA cleavage at a specific site followed 
by a strand transfer reaction. Interestingly this family 
also includes the CENP-B protein. This domain in that protein 
appears to have lost the metal binding residues and is unlikely 
to have endonuclease activity. Centromere Protein B (CENP-B) 
is a DNA-binding protein localized to the centromere.
Length=177

 Score = 57.0 bits (138),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query  1    MPPHTSHLLQPLDVGVFGPLKRSYGKLVEGMMVAGNNHINKE-------DFLHLYPPAQD  53
            +P +++ +LQPLD GV    K +Y +     ++AGNN ++         D L     A +
Sbjct  107  LPANSTSILQPLDQGVVSTFKANYRRQWLQYLLAGNNLLSPPWKKLTLLDALKWIAKAWN  166

Query  54   KVFNQANICNGF  65
             V + + I +GF
Sbjct  167  AV-SPSTITSGF  177



Lambda      K        H        a         alpha
   0.319    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00010687

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396130 pfam01409, tRNA-synt_2d, tRNA synthetases class II cor...  305     1e-102
CDD:465797 pfam18553, PheRS_DBD3, PheRS DNA binding domain 3. Thi...  68.1    3e-15 


>CDD:396130 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain 
(F).  Other tRNA synthetase sub-families are too dissimilar 
to be included. This family includes only phenylalanyl-tRNA 
synthetases. This is the core catalytic domain.
Length=245

 Score = 305 bits (783),  Expect = 1e-102, Method: Composition-based stats.
 Identities = 106/287 (37%), Positives = 139/287 (48%), Gaps = 64/287 (22%)

Query  204  PYNFKAKGAPTPAGAFHPLNKVRQEFRNIFFEMGFEEMPTNRFVETGFWNFDALYVPQQH  263
            PY+    G     G  HPL +  +  R+IF  MGFEE+     VE+ F+NFDAL +PQ H
Sbjct  1    PYDVTLPGRRIEPGGLHPLTRTLERIRDIFLGMGFEEVE-GPEVESDFYNFDALNIPQDH  59

Query  264  PARDLQDTFYISDPATADPPREDPLNDPHRLKSVHPASVVSSEKPLDYKEYWENVRQVHE  323
            PARD+QDTFY+  P                                              
Sbjct  60   PARDMQDTFYLKKPLKP-------------------------------------------  76

Query  324  NGKYGSIGYRYPWNADEALRLVLRTHTTSVSTYVLHKLAANPRPARYFSIDRVFRNEAVD  383
                             A RL+LRTHTT V    L K      P + FSI RVFR + VD
Sbjct  77   ----------------VARRLLLRTHTTPVQARTLAK--KPKPPIKIFSIGRVFRRDQVD  118

Query  384  ATHLAEFHQIEGVIADFGLTLGGLIGFMEVFFAKM-GIH-QLRFKPAYNPYTEPSMEIFG  441
            ATHL EFHQ+EG++ D  +T   L G +E F  K  G   ++RF+P+Y P+TEPS E+  
Sbjct  119  ATHLPEFHQVEGLVVDENVTFADLKGVLEEFLRKFFGFEVKVRFRPSYFPFTEPSAEVDV  178

Query  442  YHKGLGKWVEIGNSGMFRPEMLEPMGIPRDMRVYGWGLSLERPTMIK  488
            Y   LG W+E+G +GM  P +LE +GI  D   + +GL +ER  M+K
Sbjct  179  YVCKLGGWLEVGGAGMVHPNVLEAVGIDEDYSGFAFGLGVERLAMLK  225


>CDD:465797 pfam18553, PheRS_DBD3, PheRS DNA binding domain 3.  This is a 
DNA-binding fold domain found in Phenylalanyl-tRNA Synthetase 
N-terminal region. This domain belongs to a superfamily of 
'winged helix' DNA-biding domains. The topology of DBD-1 and 
DBD-3 closely resembles the topology of the Z-DNA-binding 
domain Zalpha of double-stranded RNA (dsRNA) adenosine deaminase 
and other domains from DNA-binding proteins. Mutational 
analysis indicate that DBD-1, 2 and 3 play critical roles 
in tRNAPhe binding and recognition, i.e., from the drastic reduction 
of aminoacylation activity seen upon removal of the 
N-terminal domains.
Length=57

 Score = 68.1 bits (167),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 4/59 (7%)

Query  71   SHEAKVFQAVLAAMDGLKIGDLPGIVGKENAKVGQGNAFKKGWIKKDKD--VLRPNTES  127
            S EA+VF AV  A  G+ + +L   +G   AKVG G A K  WIKKDK    +    +S
Sbjct  1    SPEARVFNAVPPA-GGISLKEL-MKLGDSVAKVGFGKAMKNKWIKKDKGDGKVVRKVDS  57



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 601084202


Query= TCONS_00010688

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396130 pfam01409, tRNA-synt_2d, tRNA synthetases class II cor...  326     2e-110
CDD:465797 pfam18553, PheRS_DBD3, PheRS DNA binding domain 3. Thi...  68.1    3e-15 


>CDD:396130 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain 
(F).  Other tRNA synthetase sub-families are too dissimilar 
to be included. This family includes only phenylalanyl-tRNA 
synthetases. This is the core catalytic domain.
Length=245

 Score = 326 bits (837),  Expect = 2e-110, Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 152/307 (50%), Gaps = 66/307 (21%)

Query  204  PYNFKAKGAPTPAGAFHPLNKVRQEFRNIFFEMGFEEMPTNRFVETGFWNFDALYVPQQH  263
            PY+    G     G  HPL +  +  R+IF  MGFEE+     VE+ F+NFDAL +PQ H
Sbjct  1    PYDVTLPGRRIEPGGLHPLTRTLERIRDIFLGMGFEEVE-GPEVESDFYNFDALNIPQDH  59

Query  264  PARDLQDTFYISDPATADPPREDPLNDPHRLKSVHPASVVSSEKPLDYKEYWENVRQVHE  323
            PARD+QDTFY+  P                                              
Sbjct  60   PARDMQDTFYLKKPLKP-------------------------------------------  76

Query  324  NGKYGSIGYRYPWNADEALRLVLRTHTTSVSTYVLHKLAANPRPARYFSIDRVFRNEAVD  383
                             A RL+LRTHTT V    L K      P + FSI RVFR + VD
Sbjct  77   ----------------VARRLLLRTHTTPVQARTLAK--KPKPPIKIFSIGRVFRRDQVD  118

Query  384  ATHLAEFHQIEGVIADFGLTLGGLIGFMEVFFAKM-GIH-QLRFKPAYNPYTEPSMEIFG  441
            ATHL EFHQ+EG++ D  +T   L G +E F  K  G   ++RF+P+Y P+TEPS E+  
Sbjct  119  ATHLPEFHQVEGLVVDENVTFADLKGVLEEFLRKFFGFEVKVRFRPSYFPFTEPSAEVDV  178

Query  442  YHKGLGKWVEIGNSGMFRPEMLEPMGIPRDMRVYGWGLSLERPTMIKYGVSNIRELLGHK  501
            Y   LG W+E+G +GM  P +LE +GI  D   + +GL +ER  M+KYG+ +IR+L  + 
Sbjct  179  YVCKLGGWLEVGGAGMVHPNVLEAVGIDEDYSGFAFGLGVERLAMLKYGIDDIRDLYEN-  237

Query  502  VDLNFIE  508
             DL F+ 
Sbjct  238  -DLRFLR  243


>CDD:465797 pfam18553, PheRS_DBD3, PheRS DNA binding domain 3.  This is a 
DNA-binding fold domain found in Phenylalanyl-tRNA Synthetase 
N-terminal region. This domain belongs to a superfamily of 
'winged helix' DNA-biding domains. The topology of DBD-1 and 
DBD-3 closely resembles the topology of the Z-DNA-binding 
domain Zalpha of double-stranded RNA (dsRNA) adenosine deaminase 
and other domains from DNA-binding proteins. Mutational 
analysis indicate that DBD-1, 2 and 3 play critical roles 
in tRNAPhe binding and recognition, i.e., from the drastic reduction 
of aminoacylation activity seen upon removal of the 
N-terminal domains.
Length=57

 Score = 68.1 bits (167),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 4/59 (7%)

Query  71   SHEAKVFQAVLAAMDGLKIGDLPGIVGKENAKVGQGNAFKKGWIKKDKD--VLRPNTES  127
            S EA+VF AV  A  G+ + +L   +G   AKVG G A K  WIKKDK    +    +S
Sbjct  1    SPEARVFNAVPPA-GGISLKEL-MKLGDSVAKVGFGKAMKNKWIKKDKGDGKVVRKVDS  57



Lambda      K        H        a         alpha
   0.318    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00010689

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459826 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase do...  459     1e-161


>CDD:459826 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain.  
This family is involved in biosynthesis of guanosine nucleotide. 
Members of this family contain a TIM barrel structure. 
In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 
are inserted in the TIM barrel. This family is a member 
of the common phosphate binding site TIM barrel family.
Length=463

 Score = 459 bits (1183),  Expect = 1e-161, Method: Composition-based stats.
 Identities = 160/361 (44%), Positives = 225/361 (62%), Gaps = 25/361 (7%)

Query  1    MVTSRDIQFHTNLDDPVTAIM-STDLVTAPAGTTLAEANDVLRSSKKGKLPIVDADGNLV  59
            +VT+RD++F T+L  PV+ +M   +LVTAP GTTL EA ++L   K  KLP+VD +G LV
Sbjct  125  IVTNRDLRFETDLSQPVSEVMTKENLVTAPEGTTLEEAKEILHKHKIEKLPVVDDNGRLV  184

Query  60   SLLSRSDLMKNLHYPLASKLPDS-KQLICAAAIGTREEDKHRLKLLVEAGLDIVVLDSSQ  118
             L++  D+ K   YP A+K  D   +L   AA+G  ++   R + LVEAG+D++V+D++ 
Sbjct  185  GLITIKDIEKAKEYPNAAK--DEQGRLRVGAAVGVGDDTLERAEALVEAGVDVLVVDTAH  242

Query  119  GNSIYQIEMIKWVKKTFPEIDVIAGNVVTREQAAALIAAGADGLRIGMGSGSACITQEVM  178
            G+S   I+ +KW+KK +P++ VIAGNV T E A ALI AGAD +++G+G GS C T+ V 
Sbjct  243  GHSKGVIDTVKWIKKKYPDVQVIAGNVATAEGAKALIEAGADAVKVGIGPGSICTTRVVA  302

Query  179  AVGRPQAVAVRSVASFAARFGVPCIADGGIQNVGHIVKGLAMGASTVMMGGLLAGTTESP  238
             VG PQ  A+  VA  A ++GVP IADGGI+  G IVK LA GA  VM+G LLAGT ESP
Sbjct  303  GVGVPQLTAIYDVAEAAKKYGVPVIADGGIKYSGDIVKALAAGADAVMLGSLLAGTDESP  362

Query  239  GEYFVSNEGQLVKAYRGMGSIAAMEDKKAGAGSKDSKASNAGTARYFSEK-DRVLVAQGV  297
            GE  +   G+  K+YRGMGS+ AM+      GSKD         RYF E  D+ LV +GV
Sbjct  363  GEVILYQ-GRRYKSYRGMGSLGAMK-----KGSKD---------RYFQEDDDKKLVPEGV  407

Query  298  AGSVLDRGSVTKFVPYLVAGVQHSLQDIGVKSLDELHDGVNKGIVRFEMRSASAMAEGNV  357
             G V  +G ++  V  LV G++  +   G K+++EL +       RF   +A+ + E + 
Sbjct  408  EGRVPYKGPLSDVVYQLVGGLRSGMGYCGAKTIEELRE-----KARFVRITAAGLRESHP  462

Query  358  H  358
            H
Sbjct  463  H  463



Lambda      K        H        a         alpha
   0.316    0.132    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00010690

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459826 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase do...  459     1e-161


>CDD:459826 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain.  
This family is involved in biosynthesis of guanosine nucleotide. 
Members of this family contain a TIM barrel structure. 
In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 
are inserted in the TIM barrel. This family is a member 
of the common phosphate binding site TIM barrel family.
Length=463

 Score = 459 bits (1183),  Expect = 1e-161, Method: Composition-based stats.
 Identities = 160/361 (44%), Positives = 225/361 (62%), Gaps = 25/361 (7%)

Query  1    MVTSRDIQFHTNLDDPVTAIM-STDLVTAPAGTTLAEANDVLRSSKKGKLPIVDADGNLV  59
            +VT+RD++F T+L  PV+ +M   +LVTAP GTTL EA ++L   K  KLP+VD +G LV
Sbjct  125  IVTNRDLRFETDLSQPVSEVMTKENLVTAPEGTTLEEAKEILHKHKIEKLPVVDDNGRLV  184

Query  60   SLLSRSDLMKNLHYPLASKLPDS-KQLICAAAIGTREEDKHRLKLLVEAGLDIVVLDSSQ  118
             L++  D+ K   YP A+K  D   +L   AA+G  ++   R + LVEAG+D++V+D++ 
Sbjct  185  GLITIKDIEKAKEYPNAAK--DEQGRLRVGAAVGVGDDTLERAEALVEAGVDVLVVDTAH  242

Query  119  GNSIYQIEMIKWVKKTFPEIDVIAGNVVTREQAAALIAAGADGLRIGMGSGSACITQEVM  178
            G+S   I+ +KW+KK +P++ VIAGNV T E A ALI AGAD +++G+G GS C T+ V 
Sbjct  243  GHSKGVIDTVKWIKKKYPDVQVIAGNVATAEGAKALIEAGADAVKVGIGPGSICTTRVVA  302

Query  179  AVGRPQAVAVRSVASFAARFGVPCIADGGIQNVGHIVKGLAMGASTVMMGGLLAGTTESP  238
             VG PQ  A+  VA  A ++GVP IADGGI+  G IVK LA GA  VM+G LLAGT ESP
Sbjct  303  GVGVPQLTAIYDVAEAAKKYGVPVIADGGIKYSGDIVKALAAGADAVMLGSLLAGTDESP  362

Query  239  GEYFVSNEGQLVKAYRGMGSIAAMEDKKAGAGSKDSKASNAGTARYFSEK-DRVLVAQGV  297
            GE  +   G+  K+YRGMGS+ AM+      GSKD         RYF E  D+ LV +GV
Sbjct  363  GEVILYQ-GRRYKSYRGMGSLGAMK-----KGSKD---------RYFQEDDDKKLVPEGV  407

Query  298  AGSVLDRGSVTKFVPYLVAGVQHSLQDIGVKSLDELHDGVNKGIVRFEMRSASAMAEGNV  357
             G V  +G ++  V  LV G++  +   G K+++EL +       RF   +A+ + E + 
Sbjct  408  EGRVPYKGPLSDVVYQLVGGLRSGMGYCGAKTIEELRE-----KARFVRITAAGLRESHP  462

Query  358  H  358
            H
Sbjct  463  H  463



Lambda      K        H        a         alpha
   0.316    0.132    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00017288

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459826 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase do...  459     1e-161


>CDD:459826 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain.  
This family is involved in biosynthesis of guanosine nucleotide. 
Members of this family contain a TIM barrel structure. 
In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 
are inserted in the TIM barrel. This family is a member 
of the common phosphate binding site TIM barrel family.
Length=463

 Score = 459 bits (1183),  Expect = 1e-161, Method: Composition-based stats.
 Identities = 160/361 (44%), Positives = 225/361 (62%), Gaps = 25/361 (7%)

Query  1    MVTSRDIQFHTNLDDPVTAIM-STDLVTAPAGTTLAEANDVLRSSKKGKLPIVDADGNLV  59
            +VT+RD++F T+L  PV+ +M   +LVTAP GTTL EA ++L   K  KLP+VD +G LV
Sbjct  125  IVTNRDLRFETDLSQPVSEVMTKENLVTAPEGTTLEEAKEILHKHKIEKLPVVDDNGRLV  184

Query  60   SLLSRSDLMKNLHYPLASKLPDS-KQLICAAAIGTREEDKHRLKLLVEAGLDIVVLDSSQ  118
             L++  D+ K   YP A+K  D   +L   AA+G  ++   R + LVEAG+D++V+D++ 
Sbjct  185  GLITIKDIEKAKEYPNAAK--DEQGRLRVGAAVGVGDDTLERAEALVEAGVDVLVVDTAH  242

Query  119  GNSIYQIEMIKWVKKTFPEIDVIAGNVVTREQAAALIAAGADGLRIGMGSGSACITQEVM  178
            G+S   I+ +KW+KK +P++ VIAGNV T E A ALI AGAD +++G+G GS C T+ V 
Sbjct  243  GHSKGVIDTVKWIKKKYPDVQVIAGNVATAEGAKALIEAGADAVKVGIGPGSICTTRVVA  302

Query  179  AVGRPQAVAVRSVASFAARFGVPCIADGGIQNVGHIVKGLAMGASTVMMGGLLAGTTESP  238
             VG PQ  A+  VA  A ++GVP IADGGI+  G IVK LA GA  VM+G LLAGT ESP
Sbjct  303  GVGVPQLTAIYDVAEAAKKYGVPVIADGGIKYSGDIVKALAAGADAVMLGSLLAGTDESP  362

Query  239  GEYFVSNEGQLVKAYRGMGSIAAMEDKKAGAGSKDSKASNAGTARYFSEK-DRVLVAQGV  297
            GE  +   G+  K+YRGMGS+ AM+      GSKD         RYF E  D+ LV +GV
Sbjct  363  GEVILYQ-GRRYKSYRGMGSLGAMK-----KGSKD---------RYFQEDDDKKLVPEGV  407

Query  298  AGSVLDRGSVTKFVPYLVAGVQHSLQDIGVKSLDELHDGVNKGIVRFEMRSASAMAEGNV  357
             G V  +G ++  V  LV G++  +   G K+++EL +       RF   +A+ + E + 
Sbjct  408  EGRVPYKGPLSDVVYQLVGGLRSGMGYCGAKTIEELRE-----KARFVRITAAGLRESHP  462

Query  358  H  358
            H
Sbjct  463  H  463



Lambda      K        H        a         alpha
   0.316    0.132    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00010691

Length=1378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-li...  254     3e-78


>CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-like GTPase. 
 All alpha-helical domain that accelerates the GTPase activity 
of Ras, thereby "switching" it into an "off" position.
Length=207

 Score = 254 bits (652),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 95/209 (45%), Positives = 146/209 (70%), Gaps = 2/209 (1%)

Query  1122  LLSRSAKEEIESFDSLHEYLRCNSFWNKLFASYIKSPRDRKFMRDVLGPLIKENVVENPE  1181
             L+S   +EEIES D+ ++ LR NS  +KL  +Y + PR +++++ VLGPL+++ ++E+ +
Sbjct  1     LISELIEEEIESSDNPNDLLRGNSLVSKLLETYNRRPRGQEYLKKVLGPLVRK-IIEDED  59

Query  1182  LDLESDPIQIYRSAINNEELRTGRRSRRPLDLPREEAIRDPETRATFIQNLQDLRDIADQ  1241
             LDLESDP +IY S IN EEL+TGR S  P D+  EEAI DPE R  F  NLQ LR++AD+
Sbjct  60    LDLESDPRKIYESLINQEELKTGR-SDLPRDVSPEEAIEDPEVRQIFEDNLQKLRELADE  118

Query  1242  FFTALKELLYRMPFGIRYISQQMYECLLSRFPGEDPGFILQAVGHWVWRNYFQPAMVEPE  1301
             F  A+   L ++P+GIRYI +Q+YE L  +FP      IL A+G +++  +F PA+V P+
Sbjct  119   FLDAIYSSLNQLPYGIRYICKQLYELLEEKFPDASEEEILNAIGGFLFLRFFCPAIVNPD  178

Query  1302  KFGVIERGLTQEQKRNLSEIAKVVAQVAS  1330
              FG+++  ++ +Q+RNL+ IAKV+  +A+
Sbjct  179   LFGLVDHQISPKQRRNLTLIAKVLQNLAN  207



Lambda      K        H        a         alpha
   0.318    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1762048000


Query= TCONS_00010693

Length=1750
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-li...  254     9e-78
CDD:461071 pfam03836, RasGAP_C, RasGAP C-terminus. This domain ca...  192     4e-57


>CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-like GTPase. 
 All alpha-helical domain that accelerates the GTPase activity 
of Ras, thereby "switching" it into an "off" position.
Length=207

 Score = 254 bits (650),  Expect = 9e-78, Method: Composition-based stats.
 Identities = 95/209 (45%), Positives = 146/209 (70%), Gaps = 2/209 (1%)

Query  1122  LLSRSAKEEIESFDSLHEYLRCNSFWNKLFASYIKSPRDRKFMRDVLGPLIKENVVENPE  1181
             L+S   +EEIES D+ ++ LR NS  +KL  +Y + PR +++++ VLGPL+++ ++E+ +
Sbjct  1     LISELIEEEIESSDNPNDLLRGNSLVSKLLETYNRRPRGQEYLKKVLGPLVRK-IIEDED  59

Query  1182  LDLESDPIQIYRSAINNEELRTGRRSRRPLDLPREEAIRDPETRATFIQNLQDLRDIADQ  1241
             LDLESDP +IY S IN EEL+TGR S  P D+  EEAI DPE R  F  NLQ LR++AD+
Sbjct  60    LDLESDPRKIYESLINQEELKTGR-SDLPRDVSPEEAIEDPEVRQIFEDNLQKLRELADE  118

Query  1242  FFTALKELLYRMPFGIRYISQQMYECLLSRFPGEDPGFILQAVGHWVWRNYFQPAMVEPE  1301
             F  A+   L ++P+GIRYI +Q+YE L  +FP      IL A+G +++  +F PA+V P+
Sbjct  119   FLDAIYSSLNQLPYGIRYICKQLYELLEEKFPDASEEEILNAIGGFLFLRFFCPAIVNPD  178

Query  1302  KFGVIERGLTQEQKRNLSEIAKVVAQVAS  1330
              FG+++  ++ +Q+RNL+ IAKV+  +A+
Sbjct  179   LFGLVDHQISPKQRRNLTLIAKVLQNLAN  207


>CDD:461071 pfam03836, RasGAP_C, RasGAP C-terminus.  This domain can be found 
in the C-terminus of the IQGAP family members, including 
human IQGAP1/2/3, S. cerevisiae Iqg1 and S. pombe Rng2. Some 
members function in cytoskeletal remodelling. Human IQGAP1 
is a scaffolding protein that can assemble multi-protein complexes 
involved in cell-cell interaction, cell adherence, 
and movement via actin/tubulin-based cytoskeletal reorganization. 
IQGAP1 is also a regulator of the MAPK and Wnt/beta-catenin 
signaling pathways.Iqg1 and Rng2 are required for actomyosin 
ring construction during cytokinesis.
Length=137

 Score = 192 bits (490),  Expect = 4e-57, Method: Composition-based stats.
 Identities = 83/142 (58%), Positives = 102/142 (72%), Gaps = 5/142 (4%)

Query  1531  YSELKRTALENILQLERTGKIRRDNHYQDLLNAIAIDIRTKHRRRIQRQRELESARLTLG  1590
             Y ELK+ ALEN+L+LE  G I R+N+YQDLLN IA DIR KHRRR QRQ ELES R TL 
Sbjct  1     YVELKKKALENLLELESLGVISRENNYQDLLNDIANDIRNKHRRREQRQAELESLRQTLK  60

Query  1591  RLNDQAAWLEQQLKTYNDYIEQAMVTLQNKKGKKRFLMPFTKQWDHQRELQKSGKVFKFG  1650
             +L ++  +LE+QL +YNDYIE  +  LQ KK K      F+KQ+ H R+LQK GK+ KFG
Sbjct  61    KLCEKNKYLEEQLDSYNDYIENCLDNLQKKKKKL-----FSKQYFHYRKLQKRGKLPKFG  115

Query  1651  SYKYSARNLADKGVLVYWKGYS  1672
             SYKYSAR L +KGVL+  +G  
Sbjct  116   SYKYSARQLYEKGVLLEIEGVP  137



Lambda      K        H        a         alpha
   0.318    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0864    0.140     1.90     42.6     43.6 

Effective search space used: 2206584600


Query= TCONS_00017289

Length=1378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-li...  254     3e-78


>CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-like GTPase. 
 All alpha-helical domain that accelerates the GTPase activity 
of Ras, thereby "switching" it into an "off" position.
Length=207

 Score = 254 bits (652),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 95/209 (45%), Positives = 146/209 (70%), Gaps = 2/209 (1%)

Query  1122  LLSRSAKEEIESFDSLHEYLRCNSFWNKLFASYIKSPRDRKFMRDVLGPLIKENVVENPE  1181
             L+S   +EEIES D+ ++ LR NS  +KL  +Y + PR +++++ VLGPL+++ ++E+ +
Sbjct  1     LISELIEEEIESSDNPNDLLRGNSLVSKLLETYNRRPRGQEYLKKVLGPLVRK-IIEDED  59

Query  1182  LDLESDPIQIYRSAINNEELRTGRRSRRPLDLPREEAIRDPETRATFIQNLQDLRDIADQ  1241
             LDLESDP +IY S IN EEL+TGR S  P D+  EEAI DPE R  F  NLQ LR++AD+
Sbjct  60    LDLESDPRKIYESLINQEELKTGR-SDLPRDVSPEEAIEDPEVRQIFEDNLQKLRELADE  118

Query  1242  FFTALKELLYRMPFGIRYISQQMYECLLSRFPGEDPGFILQAVGHWVWRNYFQPAMVEPE  1301
             F  A+   L ++P+GIRYI +Q+YE L  +FP      IL A+G +++  +F PA+V P+
Sbjct  119   FLDAIYSSLNQLPYGIRYICKQLYELLEEKFPDASEEEILNAIGGFLFLRFFCPAIVNPD  178

Query  1302  KFGVIERGLTQEQKRNLSEIAKVVAQVAS  1330
              FG+++  ++ +Q+RNL+ IAKV+  +A+
Sbjct  179   LFGLVDHQISPKQRRNLTLIAKVLQNLAN  207



Lambda      K        H        a         alpha
   0.318    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1762048000


Query= TCONS_00010692

Length=1460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-li...  254     7e-78


>CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-like GTPase. 
 All alpha-helical domain that accelerates the GTPase activity 
of Ras, thereby "switching" it into an "off" position.
Length=207

 Score = 254 bits (650),  Expect = 7e-78, Method: Composition-based stats.
 Identities = 95/209 (45%), Positives = 146/209 (70%), Gaps = 2/209 (1%)

Query  1122  LLSRSAKEEIESFDSLHEYLRCNSFWNKLFASYIKSPRDRKFMRDVLGPLIKENVVENPE  1181
             L+S   +EEIES D+ ++ LR NS  +KL  +Y + PR +++++ VLGPL+++ ++E+ +
Sbjct  1     LISELIEEEIESSDNPNDLLRGNSLVSKLLETYNRRPRGQEYLKKVLGPLVRK-IIEDED  59

Query  1182  LDLESDPIQIYRSAINNEELRTGRRSRRPLDLPREEAIRDPETRATFIQNLQDLRDIADQ  1241
             LDLESDP +IY S IN EEL+TGR S  P D+  EEAI DPE R  F  NLQ LR++AD+
Sbjct  60    LDLESDPRKIYESLINQEELKTGR-SDLPRDVSPEEAIEDPEVRQIFEDNLQKLRELADE  118

Query  1242  FFTALKELLYRMPFGIRYISQQMYECLLSRFPGEDPGFILQAVGHWVWRNYFQPAMVEPE  1301
             F  A+   L ++P+GIRYI +Q+YE L  +FP      IL A+G +++  +F PA+V P+
Sbjct  119   FLDAIYSSLNQLPYGIRYICKQLYELLEEKFPDASEEEILNAIGGFLFLRFFCPAIVNPD  178

Query  1302  KFGVIERGLTQEQKRNLSEIAKVVAQVAS  1330
              FG+++  ++ +Q+RNL+ IAKV+  +A+
Sbjct  179   LFGLVDHQISPKQRRNLTLIAKVLQNLAN  207



Lambda      K        H        a         alpha
   0.318    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1846825282


Query= TCONS_00010694

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426255 pfam01417, ENTH, ENTH domain. The ENTH (Epsin N-termin...  215     1e-68


>CDD:426255 pfam01417, ENTH, ENTH domain.  The ENTH (Epsin N-terminal homology) 
domain is found in proteins involved in endocytosis and 
cytoskeletal machinery. The function of the ENTH domain is 
unknown.
Length=124

 Score = 215 bits (549),  Expect = 1e-68, Method: Composition-based stats.
 Identities = 72/125 (58%), Positives = 94/125 (75%), Gaps = 1/125 (1%)

Query  32   YTEMESKVREATNNEPWGASTTLMQEIANGTHSYQLLNEIMPMIYKRFTDKSAEEWRQIY  91
            Y+E E KVREATNN+PWG S TLM EIA  T++Y    EIM M++KR  +   + WR IY
Sbjct  1    YSETELKVREATNNDPWGPSGTLMDEIARLTYNYVEFPEIMKMLWKRL-NDKGKNWRHIY  59

Query  92   KSLQLLEFLIKNGSERVVDDARSHLSLIRMLRQFHYIDQNGKDQGVNVRNRSSELVKLLS  151
            K+L LLE+L+KNGSERVVDD R ++ +IR L  FHYID+NGKDQG+NVR ++ E++ LL 
Sbjct  60   KALTLLEYLLKNGSERVVDDLRENIYIIRTLTDFHYIDENGKDQGINVRKKAKEILNLLE  119

Query  152  DVDLI  156
            D +L+
Sbjct  120  DDELL  124



Lambda      K        H        a         alpha
   0.307    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684448024


Query= TCONS_00010695

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426255 pfam01417, ENTH, ENTH domain. The ENTH (Epsin N-termin...  212     2e-67


>CDD:426255 pfam01417, ENTH, ENTH domain.  The ENTH (Epsin N-terminal homology) 
domain is found in proteins involved in endocytosis and 
cytoskeletal machinery. The function of the ENTH domain is 
unknown.
Length=124

 Score = 212 bits (541),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 72/125 (58%), Positives = 93/125 (74%), Gaps = 1/125 (1%)

Query  32   YTEMESKVREATNNEPWGASTTLMQEIANGTHSYQLLNEIMPMIYKRFTDKSAEEWRQIY  91
            Y+E E KVREATNN+PWG S TLM EIA  T++Y    EIM M++KR  +   + WR IY
Sbjct  1    YSETELKVREATNNDPWGPSGTLMDEIARLTYNYVEFPEIMKMLWKRL-NDKGKNWRHIY  59

Query  92   KVLQLLEFLIKNGSERVVDDARSHLSLIRMLRQFHYIDQNGKDQGVNVRNRSSELVKLLS  151
            K L LLE+L+KNGSERVVDD R ++ +IR L  FHYID+NGKDQG+NVR ++ E++ LL 
Sbjct  60   KALTLLEYLLKNGSERVVDDLRENIYIIRTLTDFHYIDENGKDQGINVRKKAKEILNLLE  119

Query  152  DVDLI  156
            D +L+
Sbjct  120  DDELL  124



Lambda      K        H        a         alpha
   0.307    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684448024


Query= TCONS_00017290

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426255 pfam01417, ENTH, ENTH domain. The ENTH (Epsin N-termin...  144     3e-42


>CDD:426255 pfam01417, ENTH, ENTH domain.  The ENTH (Epsin N-terminal homology) 
domain is found in proteins involved in endocytosis and 
cytoskeletal machinery. The function of the ENTH domain is 
unknown.
Length=124

 Score = 144 bits (365),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 47/85 (55%), Positives = 65/85 (76%), Gaps = 1/85 (1%)

Query  1    MPMIYKRFTDKSAEEWRQIYKSLQLLEFLIKNGSERVVDDARSHLSLIRMLRQFHYIDQN  60
            M M++KR  +   + WR IYK+L LLE+L+KNGSERVVDD R ++ +IR L  FHYID+N
Sbjct  41   MKMLWKRL-NDKGKNWRHIYKALTLLEYLLKNGSERVVDDLRENIYIIRTLTDFHYIDEN  99

Query  61   GKDQGVNVRNRSSELVKLLSDVDLI  85
            GKDQG+NVR ++ E++ LL D +L+
Sbjct  100  GKDQGINVRKKAKEILNLLEDDELL  124



Lambda      K        H        a         alpha
   0.307    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00010696

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426255 pfam01417, ENTH, ENTH domain. The ENTH (Epsin N-termin...  189     6e-64


>CDD:426255 pfam01417, ENTH, ENTH domain.  The ENTH (Epsin N-terminal homology) 
domain is found in proteins involved in endocytosis and 
cytoskeletal machinery. The function of the ENTH domain is 
unknown.
Length=124

 Score = 189 bits (483),  Expect = 6e-64, Method: Composition-based stats.
 Identities = 70/119 (59%), Positives = 89/119 (75%), Gaps = 1/119 (1%)

Query  32   YTEMESKVREATNNEPWGASTTLMQEIANGTHSYQLLNEIMPMIYKRFTDKSAEEWRQIY  91
            Y+E E KVREATNN+PWG S TLM EIA  T++Y    EIM M++KR  +   + WR IY
Sbjct  1    YSETELKVREATNNDPWGPSGTLMDEIARLTYNYVEFPEIMKMLWKRL-NDKGKNWRHIY  59

Query  92   KVLQLLEFLIKNGSERVVDDARSHLSLIRMLRQFHYIDQNGKDQGVNVRNRSSELVKLL  150
            K L LLE+L+KNGSERVVDD R ++ +IR L  FHYID+NGKDQG+NVR ++ E++ LL
Sbjct  60   KALTLLEYLLKNGSERVVDDLRENIYIIRTLTDFHYIDENGKDQGINVRKKAKEILNLL  118



Lambda      K        H        a         alpha
   0.316    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00017291

Length=430
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426255 pfam01417, ENTH, ENTH domain. The ENTH (Epsin N-termin...  62.2    2e-12


>CDD:426255 pfam01417, ENTH, ENTH domain.  The ENTH (Epsin N-terminal homology) 
domain is found in proteins involved in endocytosis and 
cytoskeletal machinery. The function of the ENTH domain is 
unknown.
Length=124

 Score = 62.2 bits (152),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 20/36 (56%), Positives = 28/36 (78%), Gaps = 0/36 (0%)

Query  1    MLRQFHYIDQNGKDQGVNVRNRSSELVKLLSDVDLI  36
             L  FHYID+NGKDQG+NVR ++ E++ LL D +L+
Sbjct  89   TLTDFHYIDENGKDQGINVRKKAKEILNLLEDDELL  124



Lambda      K        H        a         alpha
   0.305    0.124    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521459360


Query= TCONS_00017292

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426255 pfam01417, ENTH, ENTH domain. The ENTH (Epsin N-termin...  215     1e-68


>CDD:426255 pfam01417, ENTH, ENTH domain.  The ENTH (Epsin N-terminal homology) 
domain is found in proteins involved in endocytosis and 
cytoskeletal machinery. The function of the ENTH domain is 
unknown.
Length=124

 Score = 215 bits (549),  Expect = 1e-68, Method: Composition-based stats.
 Identities = 72/125 (58%), Positives = 94/125 (75%), Gaps = 1/125 (1%)

Query  32   YTEMESKVREATNNEPWGASTTLMQEIANGTHSYQLLNEIMPMIYKRFTDKSAEEWRQIY  91
            Y+E E KVREATNN+PWG S TLM EIA  T++Y    EIM M++KR  +   + WR IY
Sbjct  1    YSETELKVREATNNDPWGPSGTLMDEIARLTYNYVEFPEIMKMLWKRL-NDKGKNWRHIY  59

Query  92   KSLQLLEFLIKNGSERVVDDARSHLSLIRMLRQFHYIDQNGKDQGVNVRNRSSELVKLLS  151
            K+L LLE+L+KNGSERVVDD R ++ +IR L  FHYID+NGKDQG+NVR ++ E++ LL 
Sbjct  60   KALTLLEYLLKNGSERVVDDLRENIYIIRTLTDFHYIDENGKDQGINVRKKAKEILNLLE  119

Query  152  DVDLI  156
            D +L+
Sbjct  120  DDELL  124



Lambda      K        H        a         alpha
   0.307    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684448024


Query= TCONS_00017293

Length=430
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426255 pfam01417, ENTH, ENTH domain. The ENTH (Epsin N-termin...  62.2    2e-12


>CDD:426255 pfam01417, ENTH, ENTH domain.  The ENTH (Epsin N-terminal homology) 
domain is found in proteins involved in endocytosis and 
cytoskeletal machinery. The function of the ENTH domain is 
unknown.
Length=124

 Score = 62.2 bits (152),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 20/36 (56%), Positives = 28/36 (78%), Gaps = 0/36 (0%)

Query  1    MLRQFHYIDQNGKDQGVNVRNRSSELVKLLSDVDLI  36
             L  FHYID+NGKDQG+NVR ++ E++ LL D +L+
Sbjct  89   TLTDFHYIDENGKDQGINVRKKAKEILNLLEDDELL  124



Lambda      K        H        a         alpha
   0.305    0.124    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521459360


Query= TCONS_00017295

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00010699

Length=470


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00010700

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00010701

Length=470


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00010702

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00010703

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00017296

Length=773
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  412     6e-139


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 412 bits (1062),  Expect = 6e-139, Method: Composition-based stats.
 Identities = 145/298 (49%), Positives = 185/298 (62%), Gaps = 12/298 (4%)

Query  474  AVKIRRAVVARTPATSAITGSLECSKLPYKDYNYTLVHGACCENVIGYLPLPLGVAGPLT  533
            AV+ RR  +        +TG  E   L     +   V     ENVIGY+ LPLGVAGPL 
Sbjct  1    AVEERREALEE------LTGE-ELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  534  IDGQSYFIPMATTEGVLVASTSRGAKAINAGGGAVTVLTGDGMTRGPCVGFPTLARAAAA  593
            I+G+ Y +PMATTEG LVAS SRGAKAINA GG  T + GDGMTRGP   F ++A AA A
Sbjct  53   INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  594  KVWIDSEEGRSILTAAFNSTSRFARLQHLKTALAGTYLYIRFKTTTGDAMGMNMISKGVE  653
            K WI+++E    +  A   TSR   L+ ++  +AG  +Y+RF   TGDAMG NM++   E
Sbjct  113  KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  654  KALHVMATECGFDDMATISVSGNFCTDKKAAAINWIDGRGKSVVAEAIIPGDVVRSVLKS  713
             A  ++  E  F  M  +S+  N CTDKK +AINWI+GRGKSVVAEA I  +VV+ +LK+
Sbjct  173  AAAPLIEEE--FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKA  230

Query  714  DVNALVELNTSKNLIGSAMAGSVGGFNAHASNIVTAVFLATGQDPAQNVESSSCITTM  771
               ALV+   +KN IG+   G + G NAHA+N + AVFLATGQDPA   ESS     +
Sbjct  231  SPEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAAL  286



Lambda      K        H        a         alpha
   0.320    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 988048208


Query= TCONS_00017297

Length=885
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  532     0.0  


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 532 bits (1372),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/386 (48%), Positives = 240/386 (62%), Gaps = 19/386 (5%)

Query  474  AVKIRRAVVARTPATSAITGSLECSKLPYKDYNYTLVHGACCENVIGYLPLPLGVAGPLT  533
            AV+ RR  +        +TG  E   L     +   V     ENVIGY+ LPLGVAGPL 
Sbjct  1    AVEERREALEE------LTGE-ELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  534  IDGQSYFIPMATTEGVLVASTSRGAKAINAGGGAVTVLTGDGMTRGPCVGFPTLARAAAA  593
            I+G+ Y +PMATTEG LVAS SRGAKAINA GG  T + GDGMTRGP   F ++A AA A
Sbjct  53   INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  594  KVWIDSEEGRSILTAAFNSTSRFARLQHLKTALAGTYLYIRFKTTTGDAMGMNMISKGVE  653
            K WI+++E    +  A   TSR   L+ ++  +AG  +Y+RF   TGDAMG NM++   E
Sbjct  113  KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  654  KALHVMATECGFDDMATISVSGNFCTDKKAAAINWIDGRGKSVVAEAIIPGDVVRSVLKS  713
             A  ++  E  F  M  +S+  N CTDKK +AINWI+GRGKSVVAEA I  +VV+ +LK+
Sbjct  173  AAAPLIEEE--FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKA  230

Query  714  DVNALVELNTSKNLIGSAMAGSVGGFNAHASNIVTAVFLATGQDPAQNVESSSCITTMRN  773
               ALV+   +KN IG+   G + G NAHA+N + AVFLATGQDPA   ESS     +  
Sbjct  231  SPEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAALET  288

Query  774  L-NGNLQIAVSMPSIEVGTIGGGTILEAQSAMLDMLGVRGSHPTNPGDNARQLARIVAAA  832
              +G+L  +V++PS+EVGT+GGGT L  Q+  L +LGV+G+         R+LA I+AA 
Sbjct  289  WEDGDLYGSVTLPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAV  342

Query  833  VLAGELSLCSALAAGHLVRAHMAHNR  858
             LAGELS   ALAAG + + HM   R
Sbjct  343  GLAGELSALRALAAGGIQKGHMKLGR  368



Lambda      K        H        a         alpha
   0.319    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0864    0.140     1.90     42.6     43.6 

Effective search space used: 1134056060


Query= TCONS_00010707

Length=885
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  532     0.0  


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 532 bits (1372),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/386 (48%), Positives = 240/386 (62%), Gaps = 19/386 (5%)

Query  474  AVKIRRAVVARTPATSAITGSLECSKLPYKDYNYTLVHGACCENVIGYLPLPLGVAGPLT  533
            AV+ RR  +        +TG  E   L     +   V     ENVIGY+ LPLGVAGPL 
Sbjct  1    AVEERREALEE------LTGE-ELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  534  IDGQSYFIPMATTEGVLVASTSRGAKAINAGGGAVTVLTGDGMTRGPCVGFPTLARAAAA  593
            I+G+ Y +PMATTEG LVAS SRGAKAINA GG  T + GDGMTRGP   F ++A AA A
Sbjct  53   INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  594  KVWIDSEEGRSILTAAFNSTSRFARLQHLKTALAGTYLYIRFKTTTGDAMGMNMISKGVE  653
            K WI+++E    +  A   TSR   L+ ++  +AG  +Y+RF   TGDAMG NM++   E
Sbjct  113  KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  654  KALHVMATECGFDDMATISVSGNFCTDKKAAAINWIDGRGKSVVAEAIIPGDVVRSVLKS  713
             A  ++  E  F  M  +S+  N CTDKK +AINWI+GRGKSVVAEA I  +VV+ +LK+
Sbjct  173  AAAPLIEEE--FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKA  230

Query  714  DVNALVELNTSKNLIGSAMAGSVGGFNAHASNIVTAVFLATGQDPAQNVESSSCITTMRN  773
               ALV+   +KN IG+   G + G NAHA+N + AVFLATGQDPA   ESS     +  
Sbjct  231  SPEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAALET  288

Query  774  L-NGNLQIAVSMPSIEVGTIGGGTILEAQSAMLDMLGVRGSHPTNPGDNARQLARIVAAA  832
              +G+L  +V++PS+EVGT+GGGT L  Q+  L +LGV+G+         R+LA I+AA 
Sbjct  289  WEDGDLYGSVTLPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAV  342

Query  833  VLAGELSLCSALAAGHLVRAHMAHNR  858
             LAGELS   ALAAG + + HM   R
Sbjct  343  GLAGELSALRALAAGGIQKGHMKLGR  368



Lambda      K        H        a         alpha
   0.319    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1134056060


Query= TCONS_00010711

Length=1130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  537     0.0  
CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif. Th...  211     7e-64


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 537 bits (1387),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/386 (48%), Positives = 240/386 (62%), Gaps = 19/386 (5%)

Query  719   AVKIRRAVVARTPATSAITGSLECSKLPYKDYNYTLVHGACCENVIGYLPLPLGVAGPLT  778
             AV+ RR  +        +TG  E   L     +   V     ENVIGY+ LPLGVAGPL 
Sbjct  1     AVEERREALEE------LTGE-ELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  779   IDGQSYFIPMATTEGVLVASTSRGAKAINAGGGAVTVLTGDGMTRGPCVGFPTLARAAAA  838
             I+G+ Y +PMATTEG LVAS SRGAKAINA GG  T + GDGMTRGP   F ++A AA A
Sbjct  53    INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  839   KVWIDSEEGRSILTAAFNSTSRFARLQHLKTALAGTYLYIRFKTTTGDAMGMNMISKGVE  898
             K WI+++E    +  A   TSR   L+ ++  +AG  +Y+RF   TGDAMG NM++   E
Sbjct  113   KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  899   KALHVMATECGFDDMATISVSGNFCTDKKAAAINWIDGRGKSVVAEAIIPGDVVRSVLKS  958
              A  ++  E  F  M  +S+  N CTDKK +AINWI+GRGKSVVAEA I  +VV+ +LK+
Sbjct  173   AAAPLIEEE--FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKA  230

Query  959   DVNALVELNTSKNLIGSAMAGSVGGFNAHASNIVTAVFLATGQDPAQNVESSSCITTMRN  1018
                ALV+   +KN IG+   G + G NAHA+N + AVFLATGQDPA   ESS     +  
Sbjct  231   SPEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAALET  288

Query  1019  L-NGNLQIAVSMPSIEVGTIGGGTILEAQSAMLDMLGVRGSHPTNPGDNARQLARIVAAA  1077
               +G+L  +V++PS+EVGT+GGGT L  Q+  L +LGV+G+         R+LA I+AA 
Sbjct  289   WEDGDLYGSVTLPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAV  342

Query  1078  VLAGELSLCSALAAGHLVRAHMAHNR  1103
              LAGELS   ALAAG + + HM   R
Sbjct  343   GLAGELSALRALAAGGIQKGHMKLGR  368


>CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif.  This family 
is found in fungi on proteins carrying the PAS, pfam00989, 
domain. There is a well-conserved characteristic HPIH motif, 
but the function is not known.
Length=152

 Score = 211 bits (539),  Expect = 7e-64, Method: Composition-based stats.
 Identities = 86/154 (56%), Positives = 107/154 (69%), Gaps = 4/154 (3%)

Query  27   QVTGVLQSISSHACQHPIHTIVVIALLASTTYVGLLEGSLFDSVRNSRNIAGQVDVDTLL  86
            +VT  L ++S  AC+HPIHTIV++ALLASTTY+ +LEG LF     S   AG+ D D+LL
Sbjct  1    KVTPPLAALSRFACRHPIHTIVIVALLASTTYLSVLEGYLFGQDSKSIFSAGKADWDSLL  60

Query  87   QGSRNLRLGESTSWKWQVEDS--LASQDYTGVNHLALTTFIFSDSLSKSSSIAPAATELP  144
            +GSR+LRLG  T+WKWQ+EDS   AS      +HLAL T +F DS S SS  AP    +P
Sbjct  61   EGSRHLRLGPETAWKWQLEDSEEAASLSVPDADHLALLTLVFPDSNSTSS--APELDNVP  118

Query  145  IPSNASAQPVPFTPNLFSPFSHDSSLAFTLPFDQ  178
            +PSN SA  +P TPNL S  S DSSLAF+LP+DQ
Sbjct  119  LPSNLSAYLLPSTPNLLSTLSSDSSLAFSLPYDQ  152



Lambda      K        H        a         alpha
   0.319    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1442313854


Query= TCONS_00010710

Length=1130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  537     0.0  
CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif. Th...  211     7e-64


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 537 bits (1387),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/386 (48%), Positives = 240/386 (62%), Gaps = 19/386 (5%)

Query  719   AVKIRRAVVARTPATSAITGSLECSKLPYKDYNYTLVHGACCENVIGYLPLPLGVAGPLT  778
             AV+ RR  +        +TG  E   L     +   V     ENVIGY+ LPLGVAGPL 
Sbjct  1     AVEERREALEE------LTGE-ELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  779   IDGQSYFIPMATTEGVLVASTSRGAKAINAGGGAVTVLTGDGMTRGPCVGFPTLARAAAA  838
             I+G+ Y +PMATTEG LVAS SRGAKAINA GG  T + GDGMTRGP   F ++A AA A
Sbjct  53    INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  839   KVWIDSEEGRSILTAAFNSTSRFARLQHLKTALAGTYLYIRFKTTTGDAMGMNMISKGVE  898
             K WI+++E    +  A   TSR   L+ ++  +AG  +Y+RF   TGDAMG NM++   E
Sbjct  113   KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  899   KALHVMATECGFDDMATISVSGNFCTDKKAAAINWIDGRGKSVVAEAIIPGDVVRSVLKS  958
              A  ++  E  F  M  +S+  N CTDKK +AINWI+GRGKSVVAEA I  +VV+ +LK+
Sbjct  173   AAAPLIEEE--FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKA  230

Query  959   DVNALVELNTSKNLIGSAMAGSVGGFNAHASNIVTAVFLATGQDPAQNVESSSCITTMRN  1018
                ALV+   +KN IG+   G + G NAHA+N + AVFLATGQDPA   ESS     +  
Sbjct  231   SPEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAALET  288

Query  1019  L-NGNLQIAVSMPSIEVGTIGGGTILEAQSAMLDMLGVRGSHPTNPGDNARQLARIVAAA  1077
               +G+L  +V++PS+EVGT+GGGT L  Q+  L +LGV+G+         R+LA I+AA 
Sbjct  289   WEDGDLYGSVTLPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAV  342

Query  1078  VLAGELSLCSALAAGHLVRAHMAHNR  1103
              LAGELS   ALAAG + + HM   R
Sbjct  343   GLAGELSALRALAAGGIQKGHMKLGR  368


>CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif.  This family 
is found in fungi on proteins carrying the PAS, pfam00989, 
domain. There is a well-conserved characteristic HPIH motif, 
but the function is not known.
Length=152

 Score = 211 bits (539),  Expect = 7e-64, Method: Composition-based stats.
 Identities = 86/154 (56%), Positives = 107/154 (69%), Gaps = 4/154 (3%)

Query  27   QVTGVLQSISSHACQHPIHTIVVIALLASTTYVGLLEGSLFDSVRNSRNIAGQVDVDTLL  86
            +VT  L ++S  AC+HPIHTIV++ALLASTTY+ +LEG LF     S   AG+ D D+LL
Sbjct  1    KVTPPLAALSRFACRHPIHTIVIVALLASTTYLSVLEGYLFGQDSKSIFSAGKADWDSLL  60

Query  87   QGSRNLRLGESTSWKWQVEDS--LASQDYTGVNHLALTTFIFSDSLSKSSSIAPAATELP  144
            +GSR+LRLG  T+WKWQ+EDS   AS      +HLAL T +F DS S SS  AP    +P
Sbjct  61   EGSRHLRLGPETAWKWQLEDSEEAASLSVPDADHLALLTLVFPDSNSTSS--APELDNVP  118

Query  145  IPSNASAQPVPFTPNLFSPFSHDSSLAFTLPFDQ  178
            +PSN SA  +P TPNL S  S DSSLAF+LP+DQ
Sbjct  119  LPSNLSAYLLPSTPNLLSTLSSDSSLAFSLPYDQ  152



Lambda      K        H        a         alpha
   0.319    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1442313854


Query= TCONS_00017298

Length=885
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  532     0.0  


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 532 bits (1372),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/386 (48%), Positives = 240/386 (62%), Gaps = 19/386 (5%)

Query  474  AVKIRRAVVARTPATSAITGSLECSKLPYKDYNYTLVHGACCENVIGYLPLPLGVAGPLT  533
            AV+ RR  +        +TG  E   L     +   V     ENVIGY+ LPLGVAGPL 
Sbjct  1    AVEERREALEE------LTGE-ELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  534  IDGQSYFIPMATTEGVLVASTSRGAKAINAGGGAVTVLTGDGMTRGPCVGFPTLARAAAA  593
            I+G+ Y +PMATTEG LVAS SRGAKAINA GG  T + GDGMTRGP   F ++A AA A
Sbjct  53   INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  594  KVWIDSEEGRSILTAAFNSTSRFARLQHLKTALAGTYLYIRFKTTTGDAMGMNMISKGVE  653
            K WI+++E    +  A   TSR   L+ ++  +AG  +Y+RF   TGDAMG NM++   E
Sbjct  113  KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  654  KALHVMATECGFDDMATISVSGNFCTDKKAAAINWIDGRGKSVVAEAIIPGDVVRSVLKS  713
             A  ++  E  F  M  +S+  N CTDKK +AINWI+GRGKSVVAEA I  +VV+ +LK+
Sbjct  173  AAAPLIEEE--FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKA  230

Query  714  DVNALVELNTSKNLIGSAMAGSVGGFNAHASNIVTAVFLATGQDPAQNVESSSCITTMRN  773
               ALV+   +KN IG+   G + G NAHA+N + AVFLATGQDPA   ESS     +  
Sbjct  231  SPEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAALET  288

Query  774  L-NGNLQIAVSMPSIEVGTIGGGTILEAQSAMLDMLGVRGSHPTNPGDNARQLARIVAAA  832
              +G+L  +V++PS+EVGT+GGGT L  Q+  L +LGV+G+         R+LA I+AA 
Sbjct  289  WEDGDLYGSVTLPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAV  342

Query  833  VLAGELSLCSALAAGHLVRAHMAHNR  858
             LAGELS   ALAAG + + HM   R
Sbjct  343  GLAGELSALRALAAGGIQKGHMKLGR  368



Lambda      K        H        a         alpha
   0.319    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1134056060


Query= TCONS_00010705

Length=1130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  537     0.0  
CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif. Th...  211     7e-64


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 537 bits (1387),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/386 (48%), Positives = 240/386 (62%), Gaps = 19/386 (5%)

Query  719   AVKIRRAVVARTPATSAITGSLECSKLPYKDYNYTLVHGACCENVIGYLPLPLGVAGPLT  778
             AV+ RR  +        +TG  E   L     +   V     ENVIGY+ LPLGVAGPL 
Sbjct  1     AVEERREALEE------LTGE-ELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  779   IDGQSYFIPMATTEGVLVASTSRGAKAINAGGGAVTVLTGDGMTRGPCVGFPTLARAAAA  838
             I+G+ Y +PMATTEG LVAS SRGAKAINA GG  T + GDGMTRGP   F ++A AA A
Sbjct  53    INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  839   KVWIDSEEGRSILTAAFNSTSRFARLQHLKTALAGTYLYIRFKTTTGDAMGMNMISKGVE  898
             K WI+++E    +  A   TSR   L+ ++  +AG  +Y+RF   TGDAMG NM++   E
Sbjct  113   KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  899   KALHVMATECGFDDMATISVSGNFCTDKKAAAINWIDGRGKSVVAEAIIPGDVVRSVLKS  958
              A  ++  E  F  M  +S+  N CTDKK +AINWI+GRGKSVVAEA I  +VV+ +LK+
Sbjct  173   AAAPLIEEE--FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKA  230

Query  959   DVNALVELNTSKNLIGSAMAGSVGGFNAHASNIVTAVFLATGQDPAQNVESSSCITTMRN  1018
                ALV+   +KN IG+   G + G NAHA+N + AVFLATGQDPA   ESS     +  
Sbjct  231   SPEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAALET  288

Query  1019  L-NGNLQIAVSMPSIEVGTIGGGTILEAQSAMLDMLGVRGSHPTNPGDNARQLARIVAAA  1077
               +G+L  +V++PS+EVGT+GGGT L  Q+  L +LGV+G+         R+LA I+AA 
Sbjct  289   WEDGDLYGSVTLPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAV  342

Query  1078  VLAGELSLCSALAAGHLVRAHMAHNR  1103
              LAGELS   ALAAG + + HM   R
Sbjct  343   GLAGELSALRALAAGGIQKGHMKLGR  368


>CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif.  This family 
is found in fungi on proteins carrying the PAS, pfam00989, 
domain. There is a well-conserved characteristic HPIH motif, 
but the function is not known.
Length=152

 Score = 211 bits (539),  Expect = 7e-64, Method: Composition-based stats.
 Identities = 86/154 (56%), Positives = 107/154 (69%), Gaps = 4/154 (3%)

Query  27   QVTGVLQSISSHACQHPIHTIVVIALLASTTYVGLLEGSLFDSVRNSRNIAGQVDVDTLL  86
            +VT  L ++S  AC+HPIHTIV++ALLASTTY+ +LEG LF     S   AG+ D D+LL
Sbjct  1    KVTPPLAALSRFACRHPIHTIVIVALLASTTYLSVLEGYLFGQDSKSIFSAGKADWDSLL  60

Query  87   QGSRNLRLGESTSWKWQVEDS--LASQDYTGVNHLALTTFIFSDSLSKSSSIAPAATELP  144
            +GSR+LRLG  T+WKWQ+EDS   AS      +HLAL T +F DS S SS  AP    +P
Sbjct  61   EGSRHLRLGPETAWKWQLEDSEEAASLSVPDADHLALLTLVFPDSNSTSS--APELDNVP  118

Query  145  IPSNASAQPVPFTPNLFSPFSHDSSLAFTLPFDQ  178
            +PSN SA  +P TPNL S  S DSSLAF+LP+DQ
Sbjct  119  LPSNLSAYLLPSTPNLLSTLSSDSSLAFSLPYDQ  152



Lambda      K        H        a         alpha
   0.319    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1442313854


Query= TCONS_00010704

Length=1130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  537     0.0  
CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif. Th...  211     7e-64


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 537 bits (1387),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/386 (48%), Positives = 240/386 (62%), Gaps = 19/386 (5%)

Query  719   AVKIRRAVVARTPATSAITGSLECSKLPYKDYNYTLVHGACCENVIGYLPLPLGVAGPLT  778
             AV+ RR  +        +TG  E   L     +   V     ENVIGY+ LPLGVAGPL 
Sbjct  1     AVEERREALEE------LTGE-ELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  779   IDGQSYFIPMATTEGVLVASTSRGAKAINAGGGAVTVLTGDGMTRGPCVGFPTLARAAAA  838
             I+G+ Y +PMATTEG LVAS SRGAKAINA GG  T + GDGMTRGP   F ++A AA A
Sbjct  53    INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  839   KVWIDSEEGRSILTAAFNSTSRFARLQHLKTALAGTYLYIRFKTTTGDAMGMNMISKGVE  898
             K WI+++E    +  A   TSR   L+ ++  +AG  +Y+RF   TGDAMG NM++   E
Sbjct  113   KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  899   KALHVMATECGFDDMATISVSGNFCTDKKAAAINWIDGRGKSVVAEAIIPGDVVRSVLKS  958
              A  ++  E  F  M  +S+  N CTDKK +AINWI+GRGKSVVAEA I  +VV+ +LK+
Sbjct  173   AAAPLIEEE--FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKA  230

Query  959   DVNALVELNTSKNLIGSAMAGSVGGFNAHASNIVTAVFLATGQDPAQNVESSSCITTMRN  1018
                ALV+   +KN IG+   G + G NAHA+N + AVFLATGQDPA   ESS     +  
Sbjct  231   SPEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAALET  288

Query  1019  L-NGNLQIAVSMPSIEVGTIGGGTILEAQSAMLDMLGVRGSHPTNPGDNARQLARIVAAA  1077
               +G+L  +V++PS+EVGT+GGGT L  Q+  L +LGV+G+         R+LA I+AA 
Sbjct  289   WEDGDLYGSVTLPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAV  342

Query  1078  VLAGELSLCSALAAGHLVRAHMAHNR  1103
              LAGELS   ALAAG + + HM   R
Sbjct  343   GLAGELSALRALAAGGIQKGHMKLGR  368


>CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif.  This family 
is found in fungi on proteins carrying the PAS, pfam00989, 
domain. There is a well-conserved characteristic HPIH motif, 
but the function is not known.
Length=152

 Score = 211 bits (539),  Expect = 7e-64, Method: Composition-based stats.
 Identities = 86/154 (56%), Positives = 107/154 (69%), Gaps = 4/154 (3%)

Query  27   QVTGVLQSISSHACQHPIHTIVVIALLASTTYVGLLEGSLFDSVRNSRNIAGQVDVDTLL  86
            +VT  L ++S  AC+HPIHTIV++ALLASTTY+ +LEG LF     S   AG+ D D+LL
Sbjct  1    KVTPPLAALSRFACRHPIHTIVIVALLASTTYLSVLEGYLFGQDSKSIFSAGKADWDSLL  60

Query  87   QGSRNLRLGESTSWKWQVEDS--LASQDYTGVNHLALTTFIFSDSLSKSSSIAPAATELP  144
            +GSR+LRLG  T+WKWQ+EDS   AS      +HLAL T +F DS S SS  AP    +P
Sbjct  61   EGSRHLRLGPETAWKWQLEDSEEAASLSVPDADHLALLTLVFPDSNSTSS--APELDNVP  118

Query  145  IPSNASAQPVPFTPNLFSPFSHDSSLAFTLPFDQ  178
            +PSN SA  +P TPNL S  S DSSLAF+LP+DQ
Sbjct  119  LPSNLSAYLLPSTPNLLSTLSSDSSLAFSLPYDQ  152



Lambda      K        H        a         alpha
   0.319    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1442313854


Query= TCONS_00010706

Length=885
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  532     0.0  


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 532 bits (1372),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/386 (48%), Positives = 240/386 (62%), Gaps = 19/386 (5%)

Query  474  AVKIRRAVVARTPATSAITGSLECSKLPYKDYNYTLVHGACCENVIGYLPLPLGVAGPLT  533
            AV+ RR  +        +TG  E   L     +   V     ENVIGY+ LPLGVAGPL 
Sbjct  1    AVEERREALEE------LTGE-ELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  534  IDGQSYFIPMATTEGVLVASTSRGAKAINAGGGAVTVLTGDGMTRGPCVGFPTLARAAAA  593
            I+G+ Y +PMATTEG LVAS SRGAKAINA GG  T + GDGMTRGP   F ++A AA A
Sbjct  53   INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  594  KVWIDSEEGRSILTAAFNSTSRFARLQHLKTALAGTYLYIRFKTTTGDAMGMNMISKGVE  653
            K WI+++E    +  A   TSR   L+ ++  +AG  +Y+RF   TGDAMG NM++   E
Sbjct  113  KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  654  KALHVMATECGFDDMATISVSGNFCTDKKAAAINWIDGRGKSVVAEAIIPGDVVRSVLKS  713
             A  ++  E  F  M  +S+  N CTDKK +AINWI+GRGKSVVAEA I  +VV+ +LK+
Sbjct  173  AAAPLIEEE--FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKA  230

Query  714  DVNALVELNTSKNLIGSAMAGSVGGFNAHASNIVTAVFLATGQDPAQNVESSSCITTMRN  773
               ALV+   +KN IG+   G + G NAHA+N + AVFLATGQDPA   ESS     +  
Sbjct  231  SPEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAALET  288

Query  774  L-NGNLQIAVSMPSIEVGTIGGGTILEAQSAMLDMLGVRGSHPTNPGDNARQLARIVAAA  832
              +G+L  +V++PS+EVGT+GGGT L  Q+  L +LGV+G+         R+LA I+AA 
Sbjct  289  WEDGDLYGSVTLPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAV  342

Query  833  VLAGELSLCSALAAGHLVRAHMAHNR  858
             LAGELS   ALAAG + + HM   R
Sbjct  343  GLAGELSALRALAAGGIQKGHMKLGR  368



Lambda      K        H        a         alpha
   0.319    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1134056060


Query= TCONS_00010708

Length=1130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  537     0.0  
CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif. Th...  211     7e-64


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 537 bits (1387),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/386 (48%), Positives = 240/386 (62%), Gaps = 19/386 (5%)

Query  719   AVKIRRAVVARTPATSAITGSLECSKLPYKDYNYTLVHGACCENVIGYLPLPLGVAGPLT  778
             AV+ RR  +        +TG  E   L     +   V     ENVIGY+ LPLGVAGPL 
Sbjct  1     AVEERREALEE------LTGE-ELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  779   IDGQSYFIPMATTEGVLVASTSRGAKAINAGGGAVTVLTGDGMTRGPCVGFPTLARAAAA  838
             I+G+ Y +PMATTEG LVAS SRGAKAINA GG  T + GDGMTRGP   F ++A AA A
Sbjct  53    INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  839   KVWIDSEEGRSILTAAFNSTSRFARLQHLKTALAGTYLYIRFKTTTGDAMGMNMISKGVE  898
             K WI+++E    +  A   TSR   L+ ++  +AG  +Y+RF   TGDAMG NM++   E
Sbjct  113   KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  899   KALHVMATECGFDDMATISVSGNFCTDKKAAAINWIDGRGKSVVAEAIIPGDVVRSVLKS  958
              A  ++  E  F  M  +S+  N CTDKK +AINWI+GRGKSVVAEA I  +VV+ +LK+
Sbjct  173   AAAPLIEEE--FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKA  230

Query  959   DVNALVELNTSKNLIGSAMAGSVGGFNAHASNIVTAVFLATGQDPAQNVESSSCITTMRN  1018
                ALV+   +KN IG+   G + G NAHA+N + AVFLATGQDPA   ESS     +  
Sbjct  231   SPEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAALET  288

Query  1019  L-NGNLQIAVSMPSIEVGTIGGGTILEAQSAMLDMLGVRGSHPTNPGDNARQLARIVAAA  1077
               +G+L  +V++PS+EVGT+GGGT L  Q+  L +LGV+G+         R+LA I+AA 
Sbjct  289   WEDGDLYGSVTLPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAV  342

Query  1078  VLAGELSLCSALAAGHLVRAHMAHNR  1103
              LAGELS   ALAAG + + HM   R
Sbjct  343   GLAGELSALRALAAGGIQKGHMKLGR  368


>CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif.  This family 
is found in fungi on proteins carrying the PAS, pfam00989, 
domain. There is a well-conserved characteristic HPIH motif, 
but the function is not known.
Length=152

 Score = 211 bits (539),  Expect = 7e-64, Method: Composition-based stats.
 Identities = 86/154 (56%), Positives = 107/154 (69%), Gaps = 4/154 (3%)

Query  27   QVTGVLQSISSHACQHPIHTIVVIALLASTTYVGLLEGSLFDSVRNSRNIAGQVDVDTLL  86
            +VT  L ++S  AC+HPIHTIV++ALLASTTY+ +LEG LF     S   AG+ D D+LL
Sbjct  1    KVTPPLAALSRFACRHPIHTIVIVALLASTTYLSVLEGYLFGQDSKSIFSAGKADWDSLL  60

Query  87   QGSRNLRLGESTSWKWQVEDS--LASQDYTGVNHLALTTFIFSDSLSKSSSIAPAATELP  144
            +GSR+LRLG  T+WKWQ+EDS   AS      +HLAL T +F DS S SS  AP    +P
Sbjct  61   EGSRHLRLGPETAWKWQLEDSEEAASLSVPDADHLALLTLVFPDSNSTSS--APELDNVP  118

Query  145  IPSNASAQPVPFTPNLFSPFSHDSSLAFTLPFDQ  178
            +PSN SA  +P TPNL S  S DSSLAF+LP+DQ
Sbjct  119  LPSNLSAYLLPSTPNLLSTLSSDSSLAFSLPYDQ  152



Lambda      K        H        a         alpha
   0.319    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1442313854


Query= TCONS_00010709

Length=885
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  532     0.0  


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 532 bits (1372),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/386 (48%), Positives = 240/386 (62%), Gaps = 19/386 (5%)

Query  474  AVKIRRAVVARTPATSAITGSLECSKLPYKDYNYTLVHGACCENVIGYLPLPLGVAGPLT  533
            AV+ RR  +        +TG  E   L     +   V     ENVIGY+ LPLGVAGPL 
Sbjct  1    AVEERREALEE------LTGE-ELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  534  IDGQSYFIPMATTEGVLVASTSRGAKAINAGGGAVTVLTGDGMTRGPCVGFPTLARAAAA  593
            I+G+ Y +PMATTEG LVAS SRGAKAINA GG  T + GDGMTRGP   F ++A AA A
Sbjct  53   INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  594  KVWIDSEEGRSILTAAFNSTSRFARLQHLKTALAGTYLYIRFKTTTGDAMGMNMISKGVE  653
            K WI+++E    +  A   TSR   L+ ++  +AG  +Y+RF   TGDAMG NM++   E
Sbjct  113  KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  654  KALHVMATECGFDDMATISVSGNFCTDKKAAAINWIDGRGKSVVAEAIIPGDVVRSVLKS  713
             A  ++  E  F  M  +S+  N CTDKK +AINWI+GRGKSVVAEA I  +VV+ +LK+
Sbjct  173  AAAPLIEEE--FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKA  230

Query  714  DVNALVELNTSKNLIGSAMAGSVGGFNAHASNIVTAVFLATGQDPAQNVESSSCITTMRN  773
               ALV+   +KN IG+   G + G NAHA+N + AVFLATGQDPA   ESS     +  
Sbjct  231  SPEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAALET  288

Query  774  L-NGNLQIAVSMPSIEVGTIGGGTILEAQSAMLDMLGVRGSHPTNPGDNARQLARIVAAA  832
              +G+L  +V++PS+EVGT+GGGT L  Q+  L +LGV+G+         R+LA I+AA 
Sbjct  289  WEDGDLYGSVTLPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAV  342

Query  833  VLAGELSLCSALAAGHLVRAHMAHNR  858
             LAGELS   ALAAG + + HM   R
Sbjct  343  GLAGELSALRALAAGGIQKGHMKLGR  368



Lambda      K        H        a         alpha
   0.319    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1134056060


Query= TCONS_00017299

Length=1018
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  416     1e-137
CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif. Th...  212     3e-64 


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 416 bits (1071),  Expect = 1e-137, Method: Composition-based stats.
 Identities = 145/298 (49%), Positives = 185/298 (62%), Gaps = 12/298 (4%)

Query  719   AVKIRRAVVARTPATSAITGSLECSKLPYKDYNYTLVHGACCENVIGYLPLPLGVAGPLT  778
             AV+ RR  +        +TG  E   L     +   V     ENVIGY+ LPLGVAGPL 
Sbjct  1     AVEERREALEE------LTGE-ELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  779   IDGQSYFIPMATTEGVLVASTSRGAKAINAGGGAVTVLTGDGMTRGPCVGFPTLARAAAA  838
             I+G+ Y +PMATTEG LVAS SRGAKAINA GG  T + GDGMTRGP   F ++A AA A
Sbjct  53    INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  839   KVWIDSEEGRSILTAAFNSTSRFARLQHLKTALAGTYLYIRFKTTTGDAMGMNMISKGVE  898
             K WI+++E    +  A   TSR   L+ ++  +AG  +Y+RF   TGDAMG NM++   E
Sbjct  113   KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  899   KALHVMATECGFDDMATISVSGNFCTDKKAAAINWIDGRGKSVVAEAIIPGDVVRSVLKS  958
              A  ++  E  F  M  +S+  N CTDKK +AINWI+GRGKSVVAEA I  +VV+ +LK+
Sbjct  173   AAAPLIEEE--FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKA  230

Query  959   DVNALVELNTSKNLIGSAMAGSVGGFNAHASNIVTAVFLATGQDPAQNVESSSCITTM  1016
                ALV+   +KN IG+   G + G NAHA+N + AVFLATGQDPA   ESS     +
Sbjct  231   SPEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAAL  286


>CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif.  This family 
is found in fungi on proteins carrying the PAS, pfam00989, 
domain. There is a well-conserved characteristic HPIH motif, 
but the function is not known.
Length=152

 Score = 212 bits (541),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 86/154 (56%), Positives = 107/154 (69%), Gaps = 4/154 (3%)

Query  27   QVTGVLQSISSHACQHPIHTIVVIALLASTTYVGLLEGSLFDSVRNSRNIAGQVDVDTLL  86
            +VT  L ++S  AC+HPIHTIV++ALLASTTY+ +LEG LF     S   AG+ D D+LL
Sbjct  1    KVTPPLAALSRFACRHPIHTIVIVALLASTTYLSVLEGYLFGQDSKSIFSAGKADWDSLL  60

Query  87   QGSRNLRLGESTSWKWQVEDS--LASQDYTGVNHLALTTFIFSDSLSKSSSIAPAATELP  144
            +GSR+LRLG  T+WKWQ+EDS   AS      +HLAL T +F DS S SS  AP    +P
Sbjct  61   EGSRHLRLGPETAWKWQLEDSEEAASLSVPDADHLALLTLVFPDSNSTSS--APELDNVP  118

Query  145  IPSNASAQPVPFTPNLFSPFSHDSSLAFTLPFDQ  178
            +PSN SA  +P TPNL S  S DSSLAF+LP+DQ
Sbjct  119  LPSNLSAYLLPSTPNLLSTLSSDSSLAFSLPYDQ  152



Lambda      K        H        a         alpha
   0.319    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0757    0.140     1.90     42.6     43.6 

Effective search space used: 1305437672


Query= TCONS_00017300

Length=1130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  537     0.0  
CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif. Th...  211     7e-64


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 537 bits (1387),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/386 (48%), Positives = 240/386 (62%), Gaps = 19/386 (5%)

Query  719   AVKIRRAVVARTPATSAITGSLECSKLPYKDYNYTLVHGACCENVIGYLPLPLGVAGPLT  778
             AV+ RR  +        +TG  E   L     +   V     ENVIGY+ LPLGVAGPL 
Sbjct  1     AVEERREALEE------LTGE-ELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  779   IDGQSYFIPMATTEGVLVASTSRGAKAINAGGGAVTVLTGDGMTRGPCVGFPTLARAAAA  838
             I+G+ Y +PMATTEG LVAS SRGAKAINA GG  T + GDGMTRGP   F ++A AA A
Sbjct  53    INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  839   KVWIDSEEGRSILTAAFNSTSRFARLQHLKTALAGTYLYIRFKTTTGDAMGMNMISKGVE  898
             K WI+++E    +  A   TSR   L+ ++  +AG  +Y+RF   TGDAMG NM++   E
Sbjct  113   KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  899   KALHVMATECGFDDMATISVSGNFCTDKKAAAINWIDGRGKSVVAEAIIPGDVVRSVLKS  958
              A  ++  E  F  M  +S+  N CTDKK +AINWI+GRGKSVVAEA I  +VV+ +LK+
Sbjct  173   AAAPLIEEE--FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKA  230

Query  959   DVNALVELNTSKNLIGSAMAGSVGGFNAHASNIVTAVFLATGQDPAQNVESSSCITTMRN  1018
                ALV+   +KN IG+   G + G NAHA+N + AVFLATGQDPA   ESS     +  
Sbjct  231   SPEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAALET  288

Query  1019  L-NGNLQIAVSMPSIEVGTIGGGTILEAQSAMLDMLGVRGSHPTNPGDNARQLARIVAAA  1077
               +G+L  +V++PS+EVGT+GGGT L  Q+  L +LGV+G+         R+LA I+AA 
Sbjct  289   WEDGDLYGSVTLPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAV  342

Query  1078  VLAGELSLCSALAAGHLVRAHMAHNR  1103
              LAGELS   ALAAG + + HM   R
Sbjct  343   GLAGELSALRALAAGGIQKGHMKLGR  368


>CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif.  This family 
is found in fungi on proteins carrying the PAS, pfam00989, 
domain. There is a well-conserved characteristic HPIH motif, 
but the function is not known.
Length=152

 Score = 211 bits (539),  Expect = 7e-64, Method: Composition-based stats.
 Identities = 86/154 (56%), Positives = 107/154 (69%), Gaps = 4/154 (3%)

Query  27   QVTGVLQSISSHACQHPIHTIVVIALLASTTYVGLLEGSLFDSVRNSRNIAGQVDVDTLL  86
            +VT  L ++S  AC+HPIHTIV++ALLASTTY+ +LEG LF     S   AG+ D D+LL
Sbjct  1    KVTPPLAALSRFACRHPIHTIVIVALLASTTYLSVLEGYLFGQDSKSIFSAGKADWDSLL  60

Query  87   QGSRNLRLGESTSWKWQVEDS--LASQDYTGVNHLALTTFIFSDSLSKSSSIAPAATELP  144
            +GSR+LRLG  T+WKWQ+EDS   AS      +HLAL T +F DS S SS  AP    +P
Sbjct  61   EGSRHLRLGPETAWKWQLEDSEEAASLSVPDADHLALLTLVFPDSNSTSS--APELDNVP  118

Query  145  IPSNASAQPVPFTPNLFSPFSHDSSLAFTLPFDQ  178
            +PSN SA  +P TPNL S  S DSSLAF+LP+DQ
Sbjct  119  LPSNLSAYLLPSTPNLLSTLSSDSSLAFSLPYDQ  152



Lambda      K        H        a         alpha
   0.319    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1442313854


Query= TCONS_00010712

Length=1130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  537     0.0  
CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif. Th...  211     7e-64


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 537 bits (1387),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/386 (48%), Positives = 240/386 (62%), Gaps = 19/386 (5%)

Query  719   AVKIRRAVVARTPATSAITGSLECSKLPYKDYNYTLVHGACCENVIGYLPLPLGVAGPLT  778
             AV+ RR  +        +TG  E   L     +   V     ENVIGY+ LPLGVAGPL 
Sbjct  1     AVEERREALEE------LTGE-ELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  779   IDGQSYFIPMATTEGVLVASTSRGAKAINAGGGAVTVLTGDGMTRGPCVGFPTLARAAAA  838
             I+G+ Y +PMATTEG LVAS SRGAKAINA GG  T + GDGMTRGP   F ++A AA A
Sbjct  53    INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  839   KVWIDSEEGRSILTAAFNSTSRFARLQHLKTALAGTYLYIRFKTTTGDAMGMNMISKGVE  898
             K WI+++E    +  A   TSR   L+ ++  +AG  +Y+RF   TGDAMG NM++   E
Sbjct  113   KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  899   KALHVMATECGFDDMATISVSGNFCTDKKAAAINWIDGRGKSVVAEAIIPGDVVRSVLKS  958
              A  ++  E  F  M  +S+  N CTDKK +AINWI+GRGKSVVAEA I  +VV+ +LK+
Sbjct  173   AAAPLIEEE--FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKA  230

Query  959   DVNALVELNTSKNLIGSAMAGSVGGFNAHASNIVTAVFLATGQDPAQNVESSSCITTMRN  1018
                ALV+   +KN IG+   G + G NAHA+N + AVFLATGQDPA   ESS     +  
Sbjct  231   SPEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAALET  288

Query  1019  L-NGNLQIAVSMPSIEVGTIGGGTILEAQSAMLDMLGVRGSHPTNPGDNARQLARIVAAA  1077
               +G+L  +V++PS+EVGT+GGGT L  Q+  L +LGV+G+         R+LA I+AA 
Sbjct  289   WEDGDLYGSVTLPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAV  342

Query  1078  VLAGELSLCSALAAGHLVRAHMAHNR  1103
              LAGELS   ALAAG + + HM   R
Sbjct  343   GLAGELSALRALAAGGIQKGHMKLGR  368


>CDD:404239 pfam13323, HPIH, N-terminal domain with HPIH motif.  This family 
is found in fungi on proteins carrying the PAS, pfam00989, 
domain. There is a well-conserved characteristic HPIH motif, 
but the function is not known.
Length=152

 Score = 211 bits (539),  Expect = 7e-64, Method: Composition-based stats.
 Identities = 86/154 (56%), Positives = 107/154 (69%), Gaps = 4/154 (3%)

Query  27   QVTGVLQSISSHACQHPIHTIVVIALLASTTYVGLLEGSLFDSVRNSRNIAGQVDVDTLL  86
            +VT  L ++S  AC+HPIHTIV++ALLASTTY+ +LEG LF     S   AG+ D D+LL
Sbjct  1    KVTPPLAALSRFACRHPIHTIVIVALLASTTYLSVLEGYLFGQDSKSIFSAGKADWDSLL  60

Query  87   QGSRNLRLGESTSWKWQVEDS--LASQDYTGVNHLALTTFIFSDSLSKSSSIAPAATELP  144
            +GSR+LRLG  T+WKWQ+EDS   AS      +HLAL T +F DS S SS  AP    +P
Sbjct  61   EGSRHLRLGPETAWKWQLEDSEEAASLSVPDADHLALLTLVFPDSNSTSS--APELDNVP  118

Query  145  IPSNASAQPVPFTPNLFSPFSHDSSLAFTLPFDQ  178
            +PSN SA  +P TPNL S  S DSSLAF+LP+DQ
Sbjct  119  LPSNLSAYLLPSTPNLLSTLSSDSSLAFSLPYDQ  152



Lambda      K        H        a         alpha
   0.319    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1442313854


Query= TCONS_00017301

Length=885
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  532     0.0  


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 532 bits (1372),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/386 (48%), Positives = 240/386 (62%), Gaps = 19/386 (5%)

Query  474  AVKIRRAVVARTPATSAITGSLECSKLPYKDYNYTLVHGACCENVIGYLPLPLGVAGPLT  533
            AV+ RR  +        +TG  E   L     +   V     ENVIGY+ LPLGVAGPL 
Sbjct  1    AVEERREALEE------LTGE-ELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  534  IDGQSYFIPMATTEGVLVASTSRGAKAINAGGGAVTVLTGDGMTRGPCVGFPTLARAAAA  593
            I+G+ Y +PMATTEG LVAS SRGAKAINA GG  T + GDGMTRGP   F ++A AA A
Sbjct  53   INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  594  KVWIDSEEGRSILTAAFNSTSRFARLQHLKTALAGTYLYIRFKTTTGDAMGMNMISKGVE  653
            K WI+++E    +  A   TSR   L+ ++  +AG  +Y+RF   TGDAMG NM++   E
Sbjct  113  KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  654  KALHVMATECGFDDMATISVSGNFCTDKKAAAINWIDGRGKSVVAEAIIPGDVVRSVLKS  713
             A  ++  E  F  M  +S+  N CTDKK +AINWI+GRGKSVVAEA I  +VV+ +LK+
Sbjct  173  AAAPLIEEE--FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKA  230

Query  714  DVNALVELNTSKNLIGSAMAGSVGGFNAHASNIVTAVFLATGQDPAQNVESSSCITTMRN  773
               ALV+   +KN IG+   G + G NAHA+N + AVFLATGQDPA   ESS     +  
Sbjct  231  SPEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAALET  288

Query  774  L-NGNLQIAVSMPSIEVGTIGGGTILEAQSAMLDMLGVRGSHPTNPGDNARQLARIVAAA  832
              +G+L  +V++PS+EVGT+GGGT L  Q+  L +LGV+G+         R+LA I+AA 
Sbjct  289  WEDGDLYGSVTLPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAV  342

Query  833  VLAGELSLCSALAAGHLVRAHMAHNR  858
             LAGELS   ALAAG + + HM   R
Sbjct  343  GLAGELSALRALAAGGIQKGHMKLGR  368



Lambda      K        H        a         alpha
   0.319    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1134056060


Query= TCONS_00010713

Length=925
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  530     0.0  


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 530 bits (1369),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/386 (48%), Positives = 240/386 (62%), Gaps = 19/386 (5%)

Query  514  AVKIRRAVVARTPATSAITGSLECSKLPYKDYNYTLVHGACCENVIGYLPLPLGVAGPLT  573
            AV+ RR  +        +TG  E   L     +   V     ENVIGY+ LPLGVAGPL 
Sbjct  1    AVEERREALEE------LTGE-ELEHLGDGSLD-PEVADGNIENVIGYVQLPLGVAGPLL  52

Query  574  IDGQSYFIPMATTEGVLVASTSRGAKAINAGGGAVTVLTGDGMTRGPCVGFPTLARAAAA  633
            I+G+ Y +PMATTEG LVAS SRGAKAINA GG  T + GDGMTRGP   F ++A AA A
Sbjct  53   INGKDYLVPMATTEGSLVASASRGAKAINASGGFTTTVLGDGMTRGPVFLFDSVADAAEA  112

Query  634  KVWIDSEEGRSILTAAFNSTSRFARLQHLKTALAGTYLYIRFKTTTGDAMGMNMISKGVE  693
            K WI+++E    +  A   TSR   L+ ++  +AG  +Y+RF   TGDAMG NM++   E
Sbjct  113  KEWIENKENLLEIANAAEPTSRGGGLRDIEVVIAGRMVYLRFLVDTGDAMGANMVNTATE  172

Query  694  KALHVMATECGFDDMATISVSGNFCTDKKAAAINWIDGRGKSVVAEAIIPGDVVRSVLKS  753
             A  ++  E  F  M  +S+  N CTDKK +AINWI+GRGKSVVAEA I  +VV+ +LK+
Sbjct  173  AAAPLIEEE--FGGMVLLSILSNLCTDKKPSAINWIEGRGKSVVAEATIGEEVVKKILKA  230

Query  754  DVNALVELNTSKNLIGSAMAGSVGGFNAHASNIVTAVFLATGQDPAQNVESSSCITTMRN  813
               ALV+   +KN IG+   G + G NAHA+N + AVFLATGQDPA   ESS     +  
Sbjct  231  SPEALVDPYRAKN-IGTHNKGII-GGNAHAANGIAAVFLATGQDPAAVEESSHAYAALET  288

Query  814  L-NGNLQIAVSMPSIEVGTIGGGTILEAQSAMLDMLGVRGSHPTNPGDNARQLARIVAAA  872
              +G+L  +V++PS+EVGT+GGGT L  Q+  L +LGV+G+         R+LA I+AA 
Sbjct  289  WEDGDLYGSVTLPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAV  342

Query  873  VLAGELSLCSALAAGHLVRAHMAHNR  898
             LAGELS   ALAAG + + HM   R
Sbjct  343  GLAGELSALRALAAGGIQKGHMKLGR  368



Lambda      K        H        a         alpha
   0.320    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1191476620


Query= TCONS_00010714

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  114     2e-32


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 114 bits (287),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 6/75 (8%)

Query  1    MPSIEVGTIGGGTILEAQSAMLDMLGVRGSHPTNPGDNARQLARIVAAAVLAGELSLCSA  60
            +PS+EVGT+GGGT L  Q+  L +LGV+G+         R+LA I+AA  LAGELS   A
Sbjct  300  LPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAVGLAGELSALRA  353

Query  61   LAAGHLVRAHMAHNR  75
            LAAG + + HM   R
Sbjct  354  LAAGGIQKGHMKLGR  368



Lambda      K        H        a         alpha
   0.314    0.123    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00017302

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme...  114     2e-32


>CDD:459786 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase. 
 The HMG-CoA reductases catalyze the conversion of HMG-CoA 
to mevalonate, which is the rate-limiting step in the 
synthesis of isoprenoids like cholesterol. Probably because 
of the critical role of this enzyme in cholesterol homeostasis, 
mammalian HMG-CoA reductase is heavily regulated at the 
transcriptional, translational, and post-translational levels.
Length=368

 Score = 114 bits (287),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 6/75 (8%)

Query  1    MPSIEVGTIGGGTILEAQSAMLDMLGVRGSHPTNPGDNARQLARIVAAAVLAGELSLCSA  60
            +PS+EVGT+GGGT L  Q+  L +LGV+G+         R+LA I+AA  LAGELS   A
Sbjct  300  LPSLEVGTVGGGTGLPPQAECLKLLGVKGAG------KPRELAEIIAAVGLAGELSALRA  353

Query  61   LAAGHLVRAHMAHNR  75
            LAAG + + HM   R
Sbjct  354  LAAGGIQKGHMKLGR  368



Lambda      K        H        a         alpha
   0.314    0.123    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00010715

Length=941


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1196415220


Query= TCONS_00010716

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462506 pfam08518, GIT_SHD, Spa2 homology domain (SHD) of GIT....  55.5    4e-11


>CDD:462506 pfam08518, GIT_SHD, Spa2 homology domain (SHD) of GIT.  GIT proteins 
are signaling integrators with GTPase-activating function 
which may be involved in the organisation of the cytoskeletal 
matrix assembled at active zones (CAZ). The function 
of the CAZ might be to define sites of neurotransmitter release. 
Mutations in the Spa2 homology domain (SHD) domain of 
GIT1 described here interfere with the association of GIT1 with 
Piccolo, beta-PIX, and focal adhesion kinase.
Length=29

 Score = 55.5 bits (135),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 21/29 (72%), Positives = 22/29 (76%), Gaps = 0/29 (0%)

Query  131  ARDKLLRLSATQFQELSTDVYDELLRRQQ  159
            AR KL RLS  QF+EL TDVYDEL RRQ 
Sbjct  1    ARQKLARLSNQQFEELVTDVYDELDRRQT  29



Lambda      K        H        a         alpha
   0.309    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00010717

Length=810


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1041888832


Query= TCONS_00017303

Length=920


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00010718

Length=509


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 632879588


Query= TCONS_00010719

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461194 pfam04145, Ctr, Ctr copper transporter family. The red...  129     3e-39


>CDD:461194 pfam04145, Ctr, Ctr copper transporter family.  The redox active 
metal copper is an essential cofactor in critical biological 
processes such as respiration, iron transport, oxidative 
stress protection, hormone production, and pigmentation. A 
widely conserved family of high-affinity copper transport proteins 
(Ctr proteins) mediates copper uptake at the plasma 
membrane. A series of clustered methionine residues in the hydrophilic 
extracellular domain, and an MXXXM motif in the second 
transmembrane domain, are important for copper uptake. 
These methionine probably coordinate copper during the process 
of metal transport.
Length=151

 Score = 129 bits (326),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 51/146 (35%), Positives = 77/146 (53%), Gaps = 22/146 (15%)

Query  1    MFAGSCIGVICLVICLEFLR----RVGREYDAFIVRRARLRNQYLSTTASSQGLTRATDA  56
             FAGSCIG+  L +  EFLR    R+ R YD ++ RRAR R++ +S  +SS   + ++  
Sbjct  24   AFAGSCIGLFLLAVLYEFLRALRARLERRYDRWLARRARARSRSVSAASSSSSASSSSGD  83

Query  57   DASAEDSPNSTRGVVRAASKGAGRTLCSAFEDKTPVRPTLIEQLVRALLHMLQFAVAYFV  116
             +++E  P   R                      P RP++   L+RALLH +Q  + Y +
Sbjct  84   SSASESVPVLLRSGFS----------------PRPFRPSV--DLIRALLHAVQVGLGYLL  125

Query  117  MLLAMYFNGYIIICIFIGAFLGSFIF  142
            ML  M +NGY  + + +GAFLG F+F
Sbjct  126  MLAVMTYNGYYFLAVVLGAFLGYFLF  151



Lambda      K        H        a         alpha
   0.330    0.142    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00010720

Length=217
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  168     4e-54


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 168 bits (428),  Expect = 4e-54, Method: Composition-based stats.
 Identities = 69/153 (45%), Positives = 87/153 (57%), Gaps = 13/153 (8%)

Query  67   GRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRS  126
            GRIV  LF    PKT +NF +LCK+     Y  +TFHR+IP FM+QGGD T   GTGG  
Sbjct  7    GRIVIELFGDKAPKTVENFLQLCKKG---FYDGTTFHRVIPGFMVQGGDPT---GTGGGG  60

Query  127  IYGDKFADENF-SRKHDKKGILSMANAG--PNTNGSQFFITTAVTSWLDGKHVVFGEVAD  183
                   DE F      K+G LSMAN G  PN+NGSQFFIT      LDGK+ VFG+V  
Sbjct  61   KSIFPIPDEIFPLLLKHKRGALSMANTGPAPNSNGSQFFITLGPAPHLDGKYTVFGKV--  118

Query  184  EKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGE  216
             +   V+++IE +   +   R     KI++CG 
Sbjct  119  VEGMDVLEKIEKV--PTDGDRPVKPVKILSCGV  149



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00017305

Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  83.8    2e-22


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 83.8 bits (208),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 28/54 (52%), Positives = 34/54 (63%), Gaps = 3/54 (6%)

Query  67   GRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGN  120
            GRIV  LF    PKT +NF +LCK+     Y  +TFHR+IP FM+QGGD T   
Sbjct  7    GRIVIELFGDKAPKTVENFLQLCKKG---FYDGTTFHRVIPGFMVQGGDPTGTG  57



Lambda      K        H        a         alpha
   0.323    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00010721

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  125     3e-37


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 125 bits (315),  Expect = 3e-37, Method: Composition-based stats.
 Identities = 51/99 (52%), Positives = 59/99 (60%), Gaps = 9/99 (9%)

Query  116  GRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRS  175
            GRIV  LF    PKT +NF +LCK+     Y  +TFHR+IP FM+QGGD T   GTGG  
Sbjct  7    GRIVIELFGDKAPKTVENFLQLCKKG---FYDGTTFHRVIPGFMVQGGDPT---GTGGGG  60

Query  176  IYGDKFADENF-SRKHDKKGILSMANAG--PNTNGSQFF  211
                   DE F      K+G LSMAN G  PN+NGSQFF
Sbjct  61   KSIFPIPDEIFPLLLKHKRGALSMANTGPAPNSNGSQFF  99



Lambda      K        H        a         alpha
   0.322    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00010722

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  151     2e-48


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 151 bits (383),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 60/133 (45%), Positives = 76/133 (57%), Gaps = 11/133 (8%)

Query  21   GRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNVSFRHP  80
            GRIV  LF    PKT +NF +LCK+     Y  +TFHR+IP FM+QGGD T      +  
Sbjct  7    GRIVIELFGDKAPKTVENFLQLCKKG---FYDGTTFHRVIPGFMVQGGDPTGTGGGGKS-  62

Query  81   QHGDKFADENF-SRKHDKKGILSMANAG--PNTNGSQFFITTAVTSWLDGKHVVFGEVAD  137
                   DE F      K+G LSMAN G  PN+NGSQFFIT      LDGK+ VFG+V  
Sbjct  63   --IFPIPDEIFPLLLKHKRGALSMANTGPAPNSNGSQFFITLGPAPHLDGKYTVFGKV--  118

Query  138  EKSYSVVKEIEAL  150
             +   V+++IE +
Sbjct  119  VEGMDVLEKIEKV  131



Lambda      K        H        a         alpha
   0.319    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00010723

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  167     4e-54


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 167 bits (426),  Expect = 4e-54, Method: Composition-based stats.
 Identities = 70/157 (45%), Positives = 89/157 (57%), Gaps = 13/157 (8%)

Query  51   TAKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGT  110
            T  +GRIV  LF    PKT +NF +LCK+     Y  +TFHR+IP FM+QGGD T   GT
Sbjct  3    TNGLGRIVIELFGDKAPKTVENFLQLCKKG---FYDGTTFHRVIPGFMVQGGDPT---GT  56

Query  111  GGRSIYGDKFADENF-SRKHDKKGILSMANAG--PNTNGSQFFITTAVTSWLDGKHVVFG  167
            GG         DE F      K+G LSMAN G  PN+NGSQFFIT      LDGK+ VFG
Sbjct  57   GGGGKSIFPIPDEIFPLLLKHKRGALSMANTGPAPNSNGSQFFITLGPAPHLDGKYTVFG  116

Query  168  EVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGE  204
            +V   +   V+++IE +   +   R     KI++CG 
Sbjct  117  KV--VEGMDVLEKIEKV--PTDGDRPVKPVKILSCGV  149



Lambda      K        H        a         alpha
   0.318    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00010724

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461410 pfam04722, Ssu72, Ssu72-like protein. The highly conse...  333     2e-117


>CDD:461410 pfam04722, Ssu72, Ssu72-like protein.  The highly conserved and 
essential protein Ssu72 has intrinsic phosphatase activity 
and plays an essential role in the transcription cycle. Ssu72 
was originally identified in a yeast genetic screen as enhancer 
of a defect caused by a mutation in the transcription 
initiation factor TFIIB. It binds to TFIIB and is also involved 
in mRNA elongation. Ssu72 is further involved in both 
poly(A) dependent and independent termination. It is a subunit 
of the yeast cleavage and polyadenylation factor (CPF), which 
is part of the machinery for mRNA 3'-end formation. Ssu72 
is also essential for transcription termination of snRNAs.
Length=189

 Score = 333 bits (856),  Expect = 2e-117, Method: Composition-based stats.
 Identities = 111/235 (47%), Positives = 136/235 (58%), Gaps = 46/235 (20%)

Query  53   LKFCTVCASNQNRSMEAHLRLSTAPSPFPVISFGTGSLVRLPGPSITQPNVYNFNTTSYS  112
            L+F  VCASNQNRSMEAH  LS A   F V SFGTGS VRLPGPSI +PNVY+F T  Y 
Sbjct  1    LRFAVVCASNQNRSMEAHKVLSKAG--FNVRSFGTGSAVRLPGPSIDKPNVYDFGTP-YD  57

Query  113  QMYDELLAKDERLYRNNGLLNMLDRNRNLKWGPERFQDWVPGMPRVDHVSKGDKGALGTE  172
             +Y++L +KD+ LY  NGLL+MLDRNR +K  PER+QD                      
Sbjct  58   DIYNDLESKDKELYTQNGLLHMLDRNRRIKPAPERWQD---------------------C  96

Query  173  GGTVDVIITCEERCWDAVVDDLMNKGAALNRPVHVFNVDIRDNHEEALVGGKAILELATR  232
                DV+ITCEER +DAVV+DL N+G   N+PVHV NVDI+DNHEEA +G K ILEL   
Sbjct  97   KEVFDVVITCEERVFDAVVEDLENRGQETNQPVHVINVDIKDNHEEATIGAKLILELCQM  156

Query  233  LNDAATQERKIHGAEGWENGNGEARRSFDERVPEILASWQEKWPNLPALWTLAWL  287
            L  A                        ++ + EILA ++EK   L  L T+ + 
Sbjct  157  LEAAE---------------------DLEDEIDEILAEFEEKHGRL-LLHTVCFY  189



Lambda      K        H        a         alpha
   0.314    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0697    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00010725

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461410 pfam04722, Ssu72, Ssu72-like protein. The highly conse...  333     2e-117


>CDD:461410 pfam04722, Ssu72, Ssu72-like protein.  The highly conserved and 
essential protein Ssu72 has intrinsic phosphatase activity 
and plays an essential role in the transcription cycle. Ssu72 
was originally identified in a yeast genetic screen as enhancer 
of a defect caused by a mutation in the transcription 
initiation factor TFIIB. It binds to TFIIB and is also involved 
in mRNA elongation. Ssu72 is further involved in both 
poly(A) dependent and independent termination. It is a subunit 
of the yeast cleavage and polyadenylation factor (CPF), which 
is part of the machinery for mRNA 3'-end formation. Ssu72 
is also essential for transcription termination of snRNAs.
Length=189

 Score = 333 bits (856),  Expect = 2e-117, Method: Composition-based stats.
 Identities = 111/235 (47%), Positives = 136/235 (58%), Gaps = 46/235 (20%)

Query  53   LKFCTVCASNQNRSMEAHLRLSTAPSPFPVISFGTGSLVRLPGPSITQPNVYNFNTTSYS  112
            L+F  VCASNQNRSMEAH  LS A   F V SFGTGS VRLPGPSI +PNVY+F T  Y 
Sbjct  1    LRFAVVCASNQNRSMEAHKVLSKAG--FNVRSFGTGSAVRLPGPSIDKPNVYDFGTP-YD  57

Query  113  QMYDELLAKDERLYRNNGLLNMLDRNRNLKWGPERFQDWVPGMPRVDHVSKGDKGALGTE  172
             +Y++L +KD+ LY  NGLL+MLDRNR +K  PER+QD                      
Sbjct  58   DIYNDLESKDKELYTQNGLLHMLDRNRRIKPAPERWQD---------------------C  96

Query  173  GGTVDVIITCEERCWDAVVDDLMNKGAALNRPVHVFNVDIRDNHEEALVGGKAILELATR  232
                DV+ITCEER +DAVV+DL N+G   N+PVHV NVDI+DNHEEA +G K ILEL   
Sbjct  97   KEVFDVVITCEERVFDAVVEDLENRGQETNQPVHVINVDIKDNHEEATIGAKLILELCQM  156

Query  233  LNDAATQERKIHGAEGWENGNGEARRSFDERVPEILASWQEKWPNLPALWTLAWL  287
            L  A                        ++ + EILA ++EK   L  L T+ + 
Sbjct  157  LEAAE---------------------DLEDEIDEILAEFEEKHGRL-LLHTVCFY  189



Lambda      K        H        a         alpha
   0.314    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00010726

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461410 pfam04722, Ssu72, Ssu72-like protein. The highly conse...  333     2e-117


>CDD:461410 pfam04722, Ssu72, Ssu72-like protein.  The highly conserved and 
essential protein Ssu72 has intrinsic phosphatase activity 
and plays an essential role in the transcription cycle. Ssu72 
was originally identified in a yeast genetic screen as enhancer 
of a defect caused by a mutation in the transcription 
initiation factor TFIIB. It binds to TFIIB and is also involved 
in mRNA elongation. Ssu72 is further involved in both 
poly(A) dependent and independent termination. It is a subunit 
of the yeast cleavage and polyadenylation factor (CPF), which 
is part of the machinery for mRNA 3'-end formation. Ssu72 
is also essential for transcription termination of snRNAs.
Length=189

 Score = 333 bits (856),  Expect = 2e-117, Method: Composition-based stats.
 Identities = 111/235 (47%), Positives = 136/235 (58%), Gaps = 46/235 (20%)

Query  53   LKFCTVCASNQNRSMEAHLRLSTAPSPFPVISFGTGSLVRLPGPSITQPNVYNFNTTSYS  112
            L+F  VCASNQNRSMEAH  LS A   F V SFGTGS VRLPGPSI +PNVY+F T  Y 
Sbjct  1    LRFAVVCASNQNRSMEAHKVLSKAG--FNVRSFGTGSAVRLPGPSIDKPNVYDFGTP-YD  57

Query  113  QMYDELLAKDERLYRNNGLLNMLDRNRNLKWGPERFQDWVPGMPRVDHVSKGDKGALGTE  172
             +Y++L +KD+ LY  NGLL+MLDRNR +K  PER+QD                      
Sbjct  58   DIYNDLESKDKELYTQNGLLHMLDRNRRIKPAPERWQD---------------------C  96

Query  173  GGTVDVIITCEERCWDAVVDDLMNKGAALNRPVHVFNVDIRDNHEEALVGGKAILELATR  232
                DV+ITCEER +DAVV+DL N+G   N+PVHV NVDI+DNHEEA +G K ILEL   
Sbjct  97   KEVFDVVITCEERVFDAVVEDLENRGQETNQPVHVINVDIKDNHEEATIGAKLILELCQM  156

Query  233  LNDAATQERKIHGAEGWENGNGEARRSFDERVPEILASWQEKWPNLPALWTLAWL  287
            L  A                        ++ + EILA ++EK   L  L T+ + 
Sbjct  157  LEAAE---------------------DLEDEIDEILAEFEEKHGRL-LLHTVCFY  189



Lambda      K        H        a         alpha
   0.314    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00017306

Length=159
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376404 pfam00857, Isochorismatase, Isochorismatase family. Th...  62.0    3e-13


>CDD:376404 pfam00857, Isochorismatase, Isochorismatase family.  This family 
are hydrolase enzymes.
Length=173

 Score = 62.0 bits (151),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 49/117 (42%), Gaps = 21/117 (18%)

Query  10   SETKEQRLWPVHCVGGTKGATIIPEIDSSKIDLHVKKGMDSRVEMYSAFSDAFGNLDPAV  69
            ++   +         GT GA ++PE+     DL V K        +SAF+          
Sbjct  56   ADFALKDRPSPAFPPGTTGAELVPELAPLPGDLVVDK------TRFSAFAGT--------  101

Query  70   HTQSVDVDLKAVLAERGITHVFSAGIAGDYCVKYTAMDAARAGFKSFLVEDATRSVD  126
                   DL  +L E GI  +  AG+A D CV  TA DA   G++  +V DA  S+ 
Sbjct  102  -------DLDEILRELGIDTLVLAGVATDVCVLSTARDALDRGYEVVVVSDACASLS  151



Lambda      K        H        a         alpha
   0.314    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00017307

Length=159
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376404 pfam00857, Isochorismatase, Isochorismatase family. Th...  62.0    3e-13


>CDD:376404 pfam00857, Isochorismatase, Isochorismatase family.  This family 
are hydrolase enzymes.
Length=173

 Score = 62.0 bits (151),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 34/117 (29%), Positives = 49/117 (42%), Gaps = 21/117 (18%)

Query  10   SETKEQRLWPVHCVGGTKGATIIPEIDSSKIDLHVKKGMDSRVEMYSAFSDAFGNLDPAV  69
            ++   +         GT GA ++PE+     DL V K        +SAF+          
Sbjct  56   ADFALKDRPSPAFPPGTTGAELVPELAPLPGDLVVDK------TRFSAFAGT--------  101

Query  70   HTQSVDVDLKAVLAERGITHVFSAGIAGDYCVKYTAMDAARAGFKSFLVEDATRSVD  126
                   DL  +L E GI  +  AG+A D CV  TA DA   G++  +V DA  S+ 
Sbjct  102  -------DLDEILRELGIDTLVLAGVATDVCVLSTARDALDRGYEVVVVSDACASLS  151



Lambda      K        H        a         alpha
   0.314    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00010728

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376404 pfam00857, Isochorismatase, Isochorismatase family. Th...  76.3    6e-18


>CDD:376404 pfam00857, Isochorismatase, Isochorismatase family.  This family 
are hydrolase enzymes.
Length=173

 Score = 76.3 bits (188),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 72/202 (36%), Gaps = 53/202 (26%)

Query  3    AALIVVDMQEDFCPPDGSLAVQGARSIAPLINSLLANP--GFVIRVASQDYHPRDHVSFA  60
             AL+V+DMQ DF    G      A  +   IN LL       +  + ++     D     
Sbjct  1    TALLVIDMQNDFVDSGGPKVEGIAAILEN-INRLLKAARKAGIPVIFTRQVPEPD-----  54

Query  61   SNHPEPNNRPFESVIQMNNPAPGKESETKEQRLWPVHCVGGTKGATIIPEIDSSKIDLHV  120
                                    +++   +         GT GA ++PE+     DL V
Sbjct  55   ------------------------DADFALKDRPSPAFPPGTTGAELVPELAPLPGDLVV  90

Query  121  KKGMDSRVEMYSAFSDAFGNLDPAVHTQSVDVDLKAVLAERGITHVFSAGIAGDYCVKYT  180
             K        +SAF+                 DL  +L E GI  +  AG+A D CV  T
Sbjct  91   DK------TRFSAFAGT---------------DLDEILRELGIDTLVLAGVATDVCVLST  129

Query  181  AMDAARAGFKSFLVEDATRSVD  202
            A DA   G++  +V DA  S+ 
Sbjct  130  ARDALDRGYEVVVVSDACASLS  151



Lambda      K        H        a         alpha
   0.316    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00010729

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432417 pfam12239, DUF3605, Protein of unknown function (DUF36...  189     2e-63


>CDD:432417 pfam12239, DUF3605, Protein of unknown function (DUF3605).  This 
family of proteins is found in eukaryotes and viruses. Proteins 
in this family are typically between 161 and 256 amino 
acids in length.
Length=155

 Score = 189 bits (482),  Expect = 2e-63, Method: Composition-based stats.
 Identities = 66/118 (56%), Positives = 80/118 (68%), Gaps = 7/118 (6%)

Query  1    MRFMAKERLHWGDGDAEDLRPKGR-PFEFDEDIRILYNDWPYGVEEGIVHLVVWTKFELE  59
            M ++  ERLHWG        P+G  PF    D +IL NDWPYG E GIVHLVVW+KF L 
Sbjct  42   MNYILLERLHWGP----PFTPRGELPFADPSDYKILRNDWPYGFEPGIVHLVVWSKFPLP  97

Query  60   DDPATDDLTPQARKEIDDYVTRTFRSR--MPAEQVIWFKNWKSLKSVHAVEHFHVMLY  115
             DP T DLTP+AR  I+D+V RTF  R  +P ++V+WFKNW SL+SV AVEH HV+L 
Sbjct  98   VDPETGDLTPEARALIEDFVKRTFVDRLGIPRDRVLWFKNWTSLQSVRAVEHIHVLLR  155



Lambda      K        H        a         alpha
   0.322    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00010730

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00017308

Length=37
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432417 pfam12239, DUF3605, Protein of unknown function (DUF36...  64.8    2e-16


>CDD:432417 pfam12239, DUF3605, Protein of unknown function (DUF3605).  This 
family of proteins is found in eukaryotes and viruses. Proteins 
in this family are typically between 161 and 256 amino 
acids in length.
Length=155

 Score = 64.8 bits (159),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 18/29 (62%), Positives = 24/29 (83%), Gaps = 0/29 (0%)

Query  1    MPAEQVIWFKNWKSLKSVHAVEHFHVMLY  29
            +P ++V+WFKNW SL+SV AVEH HV+L 
Sbjct  127  IPRDRVLWFKNWTSLQSVRAVEHIHVLLR  155



Lambda      K        H        a         alpha
   0.326    0.134    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00010731

Length=256
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432417 pfam12239, DUF3605, Protein of unknown function (DUF36...  265     1e-91


>CDD:432417 pfam12239, DUF3605, Protein of unknown function (DUF3605).  This 
family of proteins is found in eukaryotes and viruses. Proteins 
in this family are typically between 161 and 256 amino 
acids in length.
Length=155

 Score = 265 bits (680),  Expect = 1e-91, Method: Composition-based stats.
 Identities = 90/159 (57%), Positives = 112/159 (70%), Gaps = 7/159 (4%)

Query  80   DWETVKEIVRSNRIDLFQRVPSELRRYLAFKAHIIANYGSIMRFMAKERLHWGDGDAEDL  139
             WE VKEI+ +NR++L +R PS+LRRYL +KA + A YGSIM ++  ERLHWG       
Sbjct  1    TWEEVKEIIATNRLELLKRSPSDLRRYLKWKAELKAKYGSIMNYILLERLHWGP----PF  56

Query  140  RPKGR-PFEFDEDIRILYNDWPYGVEEGIVHLVVWTKFELEDDPATDDLTPQARKEIDDY  198
             P+G  PF    D +IL NDWPYG E GIVHLVVW+KF L  DP T DLTP+AR  I+D+
Sbjct  57   TPRGELPFADPSDYKILRNDWPYGFEPGIVHLVVWSKFPLPVDPETGDLTPEARALIEDF  116

Query  199  VTRTFRSR--MPAEQVIWFKNWKSLKSVHAVEHFHVMLY  235
            V RTF  R  +P ++V+WFKNW SL+SV AVEH HV+L 
Sbjct  117  VKRTFVDRLGIPRDRVLWFKNWTSLQSVRAVEHIHVLLR  155



Lambda      K        H        a         alpha
   0.319    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00017309

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain. ...  306     3e-102


>CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain.  Histones 
can be reversibly acetylated on several lysine residues. 
Regulation of transcription is caused in part by this mechanism. 
Histone deacetylases catalyze the removal of the acetyl 
group. Histone deacetylases are related to other proteins.
Length=298

 Score = 306 bits (786),  Expect = 3e-102, Method: Composition-based stats.
 Identities = 89/308 (29%), Positives = 141/308 (46%), Gaps = 18/308 (6%)

Query  60   HPMKPWRLTLTKQLVMAYGMHHAMDLYLARAATYEEMAEFHQTDYLDFLRQVMPGDMENP  119
            HP  P RL    + +   G+   +++   R AT EE+   H  +YL+FL +  P      
Sbjct  1    HPENPERLKAILEALREAGLLPDLEIIAPRPATEEELLLVHSPEYLEFLEEAAPEGGALL  60

Query  120  EQSENIARFNFGDDCPIFNGLYNYCSLYAGGSIDAARKLCNNQSE--IAVNWSGGLHHAK  177
              S         DD P+  G Y    L AGG++ AA  + + ++    A+      HHA+
Sbjct  61   LLSYLS----GDDDTPVSPGSYEAALLAAGGTLAAADAVLSGEARNAFALVR-PPGHHAE  115

Query  178  KAEASGFCYVNDIVLGILQLLRHH--PRVMYIDIDVHHGDGVEQAFWSTDRVLTVSFHKY  235
            +  ASGFC  N++ +    L   +   RV  +D DVHHG+G ++ F+    VLT+S H+Y
Sbjct  116  RDRASGFCIFNNVAIAAKYLREKYGLKRVAIVDFDVHHGNGTQEIFYDDPSVLTLSIHQY  175

Query  236  DKDNFFPGTGPLDSTGPTHPLNPGAHHAVNVPLNDGIDDESYIQLFRDIVGACVDTYRPG  295
                F+PGTG  D TG       G  + +NVPL  G  D  Y+  F +I+   ++ ++P 
Sbjct  176  PG-GFYPGTGFADETG----EGKGKGYTLNVPLPPGTGDAEYLAAFEEILLPALEEFQPD  230

Query  296  AIVLQCGADSLGCDRLGCFNLNVGAHGACVAFVKTF----GLPLLVVGGGGYTPRNVSRA  351
             I++  G D+   D LG  NL           +        + ++ V  GGY    ++R+
Sbjct  231  LILVSAGFDAHAGDPLGGLNLTTEGFAEITRILLELADPLCIRVVSVLEGGYNLDALARS  290

Query  352  WAHETSIL  359
                 + L
Sbjct  291  ATAVLAAL  298



Lambda      K        H        a         alpha
   0.319    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00010733

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460126 pfam01237, Oxysterol_BP, Oxysterol-binding protein         281     3e-94


>CDD:460126 pfam01237, Oxysterol_BP, Oxysterol-binding protein.  
Length=366

 Score = 281 bits (721),  Expect = 3e-94, Method: Composition-based stats.
 Identities = 93/249 (37%), Positives = 126/249 (51%), Gaps = 17/249 (7%)

Query  48   HIISQLR--PGADLSRVVLPTFILEPRSMLERITNFMAHPETLLPMPTIDDPLERFVSVV  105
             + S L+   G DLS++ +P F  EP S+L+R+   + + E L      DDPLER + V 
Sbjct  1    SLWSILKKNIGKDLSKITMPVFFNEPLSLLQRLAEDLEYSELLDKAAEEDDPLERMLYVA  60

Query  106  KFYLSGWHIKPPGVKKPLNPILGETFTCYWDYPDGTRGY-YIAEQTSHHPPKSSYFFMAP  164
             F +SG+      VKKP NP+LGETF          +G+ +IAEQ SHHPP S++   + 
Sbjct  61   AFAVSGYSSTRRRVKKPFNPLLGETFELVRP----DKGFRFIAEQVSHHPPISAFHAESK  116

Query  165  EHHIRIDGTLKPRSKFLGNSAASMMEGVAILRFLNRGQNPEKGERYILTQPNMYARGILF  224
                   G + P+SKF G S     EG   L           GE Y  T+P  Y   I+F
Sbjct  117  --GWTFWGEIAPKSKFWGKSLEVNPEGTVHLTLKK------TGEHYTWTKPTTYVHNIIF  168

Query  225  GKMKYELGDHSYVRCPENNLVADIEFKTKGYFS-GTYNAIGGTIKNEKTGEVYYELSGLW  283
            GK+  E      +        A +EFK KGYFS G  N + G + + K G+V Y LSG W
Sbjct  169  GKLWVEHYGEMTITNHTTGYKAVLEFKPKGYFSSGRSNEVTGKVYD-KNGKVLYTLSGKW  227

Query  284  NGEMFIKDV  292
            N  ++IKDV
Sbjct  228  NESLYIKDV  236



Lambda      K        H        a         alpha
   0.318    0.137    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00010732

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain. ...  306     3e-102


>CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain.  Histones 
can be reversibly acetylated on several lysine residues. 
Regulation of transcription is caused in part by this mechanism. 
Histone deacetylases catalyze the removal of the acetyl 
group. Histone deacetylases are related to other proteins.
Length=298

 Score = 306 bits (786),  Expect = 3e-102, Method: Composition-based stats.
 Identities = 89/308 (29%), Positives = 141/308 (46%), Gaps = 18/308 (6%)

Query  60   HPMKPWRLTLTKQLVMAYGMHHAMDLYLARAATYEEMAEFHQTDYLDFLRQVMPGDMENP  119
            HP  P RL    + +   G+   +++   R AT EE+   H  +YL+FL +  P      
Sbjct  1    HPENPERLKAILEALREAGLLPDLEIIAPRPATEEELLLVHSPEYLEFLEEAAPEGGALL  60

Query  120  EQSENIARFNFGDDCPIFNGLYNYCSLYAGGSIDAARKLCNNQSE--IAVNWSGGLHHAK  177
              S         DD P+  G Y    L AGG++ AA  + + ++    A+      HHA+
Sbjct  61   LLSYLS----GDDDTPVSPGSYEAALLAAGGTLAAADAVLSGEARNAFALVR-PPGHHAE  115

Query  178  KAEASGFCYVNDIVLGILQLLRHH--PRVMYIDIDVHHGDGVEQAFWSTDRVLTVSFHKY  235
            +  ASGFC  N++ +    L   +   RV  +D DVHHG+G ++ F+    VLT+S H+Y
Sbjct  116  RDRASGFCIFNNVAIAAKYLREKYGLKRVAIVDFDVHHGNGTQEIFYDDPSVLTLSIHQY  175

Query  236  DKDNFFPGTGPLDSTGPTHPLNPGAHHAVNVPLNDGIDDESYIQLFRDIVGACVDTYRPG  295
                F+PGTG  D TG       G  + +NVPL  G  D  Y+  F +I+   ++ ++P 
Sbjct  176  PG-GFYPGTGFADETG----EGKGKGYTLNVPLPPGTGDAEYLAAFEEILLPALEEFQPD  230

Query  296  AIVLQCGADSLGCDRLGCFNLNVGAHGACVAFVKTF----GLPLLVVGGGGYTPRNVSRA  351
             I++  G D+   D LG  NL           +        + ++ V  GGY    ++R+
Sbjct  231  LILVSAGFDAHAGDPLGGLNLTTEGFAEITRILLELADPLCIRVVSVLEGGYNLDALARS  290

Query  352  WAHETSIL  359
                 + L
Sbjct  291  ATAVLAAL  298



Lambda      K        H        a         alpha
   0.319    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00017310

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460126 pfam01237, Oxysterol_BP, Oxysterol-binding protein         327     7e-110


>CDD:460126 pfam01237, Oxysterol_BP, Oxysterol-binding protein.  
Length=366

 Score = 327 bits (840),  Expect = 7e-110, Method: Composition-based stats.
 Identities = 120/369 (33%), Positives = 170/369 (46%), Gaps = 65/369 (18%)

Query  44   HIISQLR--PGADLSRVVLPTFILEPRSMLERITNFMAHPETLLPMPTIDDPLERFVSVV  101
             + S L+   G DLS++ +P F  EP S+L+R+   + + E L      DDPLER + V 
Sbjct  1    SLWSILKKNIGKDLSKITMPVFFNEPLSLLQRLAEDLEYSELLDKAAEEDDPLERMLYVA  60

Query  102  KFYLSGWHIKPPGVKKPLNPILGETFTCYWDYPDGTRGY-YIAEQTSHHPPKSSYFFMAP  160
             F +SG+      VKKP NP+LGETF          +G+ +IAEQ SHHPP S++   + 
Sbjct  61   AFAVSGYSSTRRRVKKPFNPLLGETFELVRP----DKGFRFIAEQVSHHPPISAFHAESK  116

Query  161  EHHIRIDGTLKPRSKFLGNSAASMMEGVAILRFLNRGQNPEKGERYILTQPNMYARGILF  220
                   G + P+SKF G S     EG   L           GE Y  T+P  Y   I+F
Sbjct  117  --GWTFWGEIAPKSKFWGKSLEVNPEGTVHLTLKK------TGEHYTWTKPTTYVHNIIF  168

Query  221  GKMKYELGDHSYVRCPENNLVADIEFKTKGYFS-GTYNAIGGTIKNEKTGEVYYELSGLW  279
            GK+  E      +        A +EFK KGYFS G  N + G + + K G+V Y LSG W
Sbjct  169  GKLWVEHYGEMTITNHTTGYKAVLEFKPKGYFSSGRSNEVTGKVYD-KNGKVLYTLSGKW  227

Query  280  NGEMFIKDVHTHKKDILFDATHAKHTPPSTRPIEQQGERESQRLWHST------------  327
            N  ++IKDV T KK    D             +E+Q + ES+ LW +             
Sbjct  228  NESLYIKDVSTGKKSSEDD------------SVEEQPDGESRLLWKAGPLPNAYYGFTSF  275

Query  328  ------------------------VKALLARNHEAATDEKSKIEERQREEAAKRADEGVE  363
                                     +AL   + + A +EK ++EE+QR    +R ++G E
Sbjct  276  AVTLNELTDELGKLPPTDSRLRPDQRALENGDIDEAEEEKLRLEEKQRARRKEREEKGEE  335

Query  364  WRPRLFRPV  372
            W+PR F+ V
Sbjct  336  WKPRWFKKV  344



Lambda      K        H        a         alpha
   0.315    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00010734

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain. ...  306     3e-102


>CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain.  Histones 
can be reversibly acetylated on several lysine residues. 
Regulation of transcription is caused in part by this mechanism. 
Histone deacetylases catalyze the removal of the acetyl 
group. Histone deacetylases are related to other proteins.
Length=298

 Score = 306 bits (786),  Expect = 3e-102, Method: Composition-based stats.
 Identities = 89/308 (29%), Positives = 141/308 (46%), Gaps = 18/308 (6%)

Query  60   HPMKPWRLTLTKQLVMAYGMHHAMDLYLARAATYEEMAEFHQTDYLDFLRQVMPGDMENP  119
            HP  P RL    + +   G+   +++   R AT EE+   H  +YL+FL +  P      
Sbjct  1    HPENPERLKAILEALREAGLLPDLEIIAPRPATEEELLLVHSPEYLEFLEEAAPEGGALL  60

Query  120  EQSENIARFNFGDDCPIFNGLYNYCSLYAGGSIDAARKLCNNQSE--IAVNWSGGLHHAK  177
              S         DD P+  G Y    L AGG++ AA  + + ++    A+      HHA+
Sbjct  61   LLSYLS----GDDDTPVSPGSYEAALLAAGGTLAAADAVLSGEARNAFALVR-PPGHHAE  115

Query  178  KAEASGFCYVNDIVLGILQLLRHH--PRVMYIDIDVHHGDGVEQAFWSTDRVLTVSFHKY  235
            +  ASGFC  N++ +    L   +   RV  +D DVHHG+G ++ F+    VLT+S H+Y
Sbjct  116  RDRASGFCIFNNVAIAAKYLREKYGLKRVAIVDFDVHHGNGTQEIFYDDPSVLTLSIHQY  175

Query  236  DKDNFFPGTGPLDSTGPTHPLNPGAHHAVNVPLNDGIDDESYIQLFRDIVGACVDTYRPG  295
                F+PGTG  D TG       G  + +NVPL  G  D  Y+  F +I+   ++ ++P 
Sbjct  176  PG-GFYPGTGFADETG----EGKGKGYTLNVPLPPGTGDAEYLAAFEEILLPALEEFQPD  230

Query  296  AIVLQCGADSLGCDRLGCFNLNVGAHGACVAFVKTF----GLPLLVVGGGGYTPRNVSRA  351
             I++  G D+   D LG  NL           +        + ++ V  GGY    ++R+
Sbjct  231  LILVSAGFDAHAGDPLGGLNLTTEGFAEITRILLELADPLCIRVVSVLEGGYNLDALARS  290

Query  352  WAHETSIL  359
                 + L
Sbjct  291  ATAVLAAL  298



Lambda      K        H        a         alpha
   0.319    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00010735

Length=491
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460126 pfam01237, Oxysterol_BP, Oxysterol-binding protein         327     2e-109


>CDD:460126 pfam01237, Oxysterol_BP, Oxysterol-binding protein.  
Length=366

 Score = 327 bits (840),  Expect = 2e-109, Method: Composition-based stats.
 Identities = 120/369 (33%), Positives = 170/369 (46%), Gaps = 65/369 (18%)

Query  44   HIISQLR--PGADLSRVVLPTFILEPRSMLERITNFMAHPETLLPMPTIDDPLERFVSVV  101
             + S L+   G DLS++ +P F  EP S+L+R+   + + E L      DDPLER + V 
Sbjct  1    SLWSILKKNIGKDLSKITMPVFFNEPLSLLQRLAEDLEYSELLDKAAEEDDPLERMLYVA  60

Query  102  KFYLSGWHIKPPGVKKPLNPILGETFTCYWDYPDGTRGY-YIAEQTSHHPPKSSYFFMAP  160
             F +SG+      VKKP NP+LGETF          +G+ +IAEQ SHHPP S++   + 
Sbjct  61   AFAVSGYSSTRRRVKKPFNPLLGETFELVRP----DKGFRFIAEQVSHHPPISAFHAESK  116

Query  161  EHHIRIDGTLKPRSKFLGNSAASMMEGVAILRFLNRGQNPEKGERYILTQPNMYARGILF  220
                   G + P+SKF G S     EG   L           GE Y  T+P  Y   I+F
Sbjct  117  --GWTFWGEIAPKSKFWGKSLEVNPEGTVHLTLKK------TGEHYTWTKPTTYVHNIIF  168

Query  221  GKMKYELGDHSYVRCPENNLVADIEFKTKGYFS-GTYNAIGGTIKNEKTGEVYYELSGLW  279
            GK+  E      +        A +EFK KGYFS G  N + G + + K G+V Y LSG W
Sbjct  169  GKLWVEHYGEMTITNHTTGYKAVLEFKPKGYFSSGRSNEVTGKVYD-KNGKVLYTLSGKW  227

Query  280  NGEMFIKDVHTHKKDILFDATHAKHTPPSTRPIEQQGERESQRLWHST------------  327
            N  ++IKDV T KK    D             +E+Q + ES+ LW +             
Sbjct  228  NESLYIKDVSTGKKSSEDD------------SVEEQPDGESRLLWKAGPLPNAYYGFTSF  275

Query  328  ------------------------VKALLARNHEAATDEKSKIEERQREEAAKRADEGVE  363
                                     +AL   + + A +EK ++EE+QR    +R ++G E
Sbjct  276  AVTLNELTDELGKLPPTDSRLRPDQRALENGDIDEAEEEKLRLEEKQRARRKEREEKGEE  335

Query  364  WRPRLFRPV  372
            W+PR F+ V
Sbjct  336  WKPRWFKKV  344



Lambda      K        H        a         alpha
   0.313    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 605626400


Query= TCONS_00017311

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain. ...  306     3e-102


>CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain.  Histones 
can be reversibly acetylated on several lysine residues. 
Regulation of transcription is caused in part by this mechanism. 
Histone deacetylases catalyze the removal of the acetyl 
group. Histone deacetylases are related to other proteins.
Length=298

 Score = 306 bits (786),  Expect = 3e-102, Method: Composition-based stats.
 Identities = 89/308 (29%), Positives = 141/308 (46%), Gaps = 18/308 (6%)

Query  60   HPMKPWRLTLTKQLVMAYGMHHAMDLYLARAATYEEMAEFHQTDYLDFLRQVMPGDMENP  119
            HP  P RL    + +   G+   +++   R AT EE+   H  +YL+FL +  P      
Sbjct  1    HPENPERLKAILEALREAGLLPDLEIIAPRPATEEELLLVHSPEYLEFLEEAAPEGGALL  60

Query  120  EQSENIARFNFGDDCPIFNGLYNYCSLYAGGSIDAARKLCNNQSE--IAVNWSGGLHHAK  177
              S         DD P+  G Y    L AGG++ AA  + + ++    A+      HHA+
Sbjct  61   LLSYLS----GDDDTPVSPGSYEAALLAAGGTLAAADAVLSGEARNAFALVR-PPGHHAE  115

Query  178  KAEASGFCYVNDIVLGILQLLRHH--PRVMYIDIDVHHGDGVEQAFWSTDRVLTVSFHKY  235
            +  ASGFC  N++ +    L   +   RV  +D DVHHG+G ++ F+    VLT+S H+Y
Sbjct  116  RDRASGFCIFNNVAIAAKYLREKYGLKRVAIVDFDVHHGNGTQEIFYDDPSVLTLSIHQY  175

Query  236  DKDNFFPGTGPLDSTGPTHPLNPGAHHAVNVPLNDGIDDESYIQLFRDIVGACVDTYRPG  295
                F+PGTG  D TG       G  + +NVPL  G  D  Y+  F +I+   ++ ++P 
Sbjct  176  PG-GFYPGTGFADETG----EGKGKGYTLNVPLPPGTGDAEYLAAFEEILLPALEEFQPD  230

Query  296  AIVLQCGADSLGCDRLGCFNLNVGAHGACVAFVKTF----GLPLLVVGGGGYTPRNVSRA  351
             I++  G D+   D LG  NL           +        + ++ V  GGY    ++R+
Sbjct  231  LILVSAGFDAHAGDPLGGLNLTTEGFAEITRILLELADPLCIRVVSVLEGGYNLDALARS  290

Query  352  WAHETSIL  359
                 + L
Sbjct  291  ATAVLAAL  298



Lambda      K        H        a         alpha
   0.319    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00010736

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433424 pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomuta...  140     6e-41
CDD:278869 pfam00463, ICL, Isocitrate lyase family                    94.9    2e-22


>CDD:433424 pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase.  This 
domain includes the enzyme Phosphoenolpyruvate phosphomutase 
(EC:5.4.2.9). This protein has been characterized as catalyzing 
the formation of a carbon-phosphorus bond by converting 
phosphoenolpyruvate (PEP) to phosphonopyruvate (P-Pyr). 
This enzyme has a TIM barrel fold.
Length=241

 Score = 140 bits (355),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 83/254 (33%), Positives = 119/254 (47%), Gaps = 20/254 (8%)

Query  12   RSLEDPKSFTVAPGVYDGLSARIALSVGFDALYMTGAGTAASVHGQADLGICTLNDMRAN  71
            R+L  P    V P  +D  SARI  + GF A+  + AG AAS  G  D  +   +++ A 
Sbjct  2    RALHRPGGPLVLPNAWDAASARIVEAAGFPAIATSSAGVAAS-LGYPDGELLPRDELLAA  60

Query  72   AEMLANISPST--PVIADADTGYGG-PIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHLA  128
            A     I+ +   PV AD +TGYG  P  VA T  +   +GV   +IED    +  G   
Sbjct  61   A---RRIAAAVDLPVSADLETGYGDSPEEVAETVRRLIAAGVVGVNIEDSKTGRPGGQ--  115

Query  129  GKILVDKETYVSRIRAAVQARKRMGSDIVVIARTDAL---QGYGYEESVARLRAARDAGA  185
               L+D E   +RIRAA  A +  G   V+ ARTDA    +G   EE++ R RA  +AGA
Sbjct  116  ---LLDVEEAAARIRAARAAARAAGVPFVINARTDAFLLGRGDALEEAIRRARAYAEAGA  172

Query  186  DVGFLEGITSKEMARQVVQDLAPWPMLLNMVEHGATPSISADEAKEMGFRIIIFPFAAIG  245
            D  F+ G+        +V   A  P  +N++    T S+   E   +G   I +      
Sbjct  173  DGIFVPGLLDPADIAALV---AAVPGPVNVLAGPGTLSV--AELAALGVARISYGNHLAR  227

Query  246  PALTAIREGMEKLK  259
             AL A+R   E++ 
Sbjct  228  AALAALRRAAEEIL  241


>CDD:278869 pfam00463, ICL, Isocitrate lyase family.  
Length=526

 Score = 94.9 bits (236),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)

Query  73   EMLANISPSTPVIADADTGYGGPIMVARTTEQYSRSGVAAFHIEDQVQ-TKRCGHLAGKI  131
               A +    P+IADADTG+GG   V + T+ +   G A  HIEDQ   TK+CGH+AGK+
Sbjct  141  AKTAYVDYLRPIIADADTGHGGLTAVVKLTKLFIERGAAGIHIEDQAPGTKKCGHMAGKV  200

Query  132  LVDKETYVSRIRAAVQARKRMGSDIVVIARTDA  164
            LV  + +++R+ A       MGSD++ +ARTD+
Sbjct  201  LVPIQEHINRLVAIRAQADIMGSDLLAVARTDS  233



Lambda      K        H        a         alpha
   0.318    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00010737

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433424 pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomuta...  104     3e-28
CDD:278869 pfam00463, ICL, Isocitrate lyase family                    94.1    7e-23


>CDD:433424 pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase.  This 
domain includes the enzyme Phosphoenolpyruvate phosphomutase 
(EC:5.4.2.9). This protein has been characterized as catalyzing 
the formation of a carbon-phosphorus bond by converting 
phosphoenolpyruvate (PEP) to phosphonopyruvate (P-Pyr). 
This enzyme has a TIM barrel fold.
Length=241

 Score = 104 bits (263),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 61/193 (32%), Positives = 88/193 (46%), Gaps = 16/193 (8%)

Query  6    EMLANISPST--PVIADADTGYGG-PIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAG  62
                 I+ +   PV AD +TGYG  P  VA T  +   +GV   +IED    +  G L  
Sbjct  59   AAARRIAAAVDLPVSADLETGYGDSPEEVAETVRRLIAAGVVGVNIEDSKTGRPGGQL--  116

Query  63   KILVDKETYVSRIRAAVQARKRMGSDIVVIARTDAL---QGYGYEESVARLRAARDAGAD  119
               +D E   +RIRAA  A +  G   V+ ARTDA    +G   EE++ R RA  +AGAD
Sbjct  117  ---LDVEEAAARIRAARAAARAAGVPFVINARTDAFLLGRGDALEEAIRRARAYAEAGAD  173

Query  120  VGFLEGITSKEMARQVVQDLAPWPMLLNMVEHGATPSISADEAKEMGFRIIIFPFAAIGP  179
              F+ G+        +V   A  P  +N++    T S+   E   +G   I +       
Sbjct  174  GIFVPGLLDPADIAALV---AAVPGPVNVLAGPGTLSV--AELAALGVARISYGNHLARA  228

Query  180  ALTAIREGMEKLK  192
            AL A+R   E++ 
Sbjct  229  ALAALRRAAEEIL  241


>CDD:278869 pfam00463, ICL, Isocitrate lyase family.  
Length=526

 Score = 94.1 bits (234),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)

Query  6    EMLANISPSTPVIADADTGYGGPIMVARTTEQYSRSGVAAFHIEDQVQ-TKRCGHLAGKI  64
               A +    P+IADADTG+GG   V + T+ +   G A  HIEDQ   TK+CGH+AGK+
Sbjct  141  AKTAYVDYLRPIIADADTGHGGLTAVVKLTKLFIERGAAGIHIEDQAPGTKKCGHMAGKV  200

Query  65   LVDKETYVSRIRAAVQARKRMGSDIVVIARTDA  97
            LV  + +++R+ A       MGSD++ +ARTD+
Sbjct  201  LVPIQEHINRLVAIRAQADIMGSDLLAVARTDS  233



Lambda      K        H        a         alpha
   0.318    0.133    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00010738

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433424 pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomuta...  141     4e-41
CDD:278869 pfam00463, ICL, Isocitrate lyase family                    94.9    3e-22


>CDD:433424 pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase.  This 
domain includes the enzyme Phosphoenolpyruvate phosphomutase 
(EC:5.4.2.9). This protein has been characterized as catalyzing 
the formation of a carbon-phosphorus bond by converting 
phosphoenolpyruvate (PEP) to phosphonopyruvate (P-Pyr). 
This enzyme has a TIM barrel fold.
Length=241

 Score = 141 bits (357),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 83/254 (33%), Positives = 119/254 (47%), Gaps = 20/254 (8%)

Query  12   RSLEDPKSFTVAPGVYDGLSARIALSVGFDALYMTGAGTAASVHGQADLGICTLNDMRAN  71
            R+L  P    V P  +D  SARI  + GF A+  + AG AAS  G  D  +   +++ A 
Sbjct  2    RALHRPGGPLVLPNAWDAASARIVEAAGFPAIATSSAGVAAS-LGYPDGELLPRDELLAA  60

Query  72   AEMLANISPST--PVIADADTGYGG-PIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHLA  128
            A     I+ +   PV AD +TGYG  P  VA T  +   +GV   +IED    +  G   
Sbjct  61   A---RRIAAAVDLPVSADLETGYGDSPEEVAETVRRLIAAGVVGVNIEDSKTGRPGGQ--  115

Query  129  GKILVDKETYVSRIRAAVQARKRMGSDIVVIARTDAL---QGYGYEESVARLRAARDAGA  185
               L+D E   +RIRAA  A +  G   V+ ARTDA    +G   EE++ R RA  +AGA
Sbjct  116  ---LLDVEEAAARIRAARAAARAAGVPFVINARTDAFLLGRGDALEEAIRRARAYAEAGA  172

Query  186  DVGFLEGITSKEMARQVVQDLAPWPMLLNMVEHGATPSISADEAKEMGFRIIIFPFAAIG  245
            D  F+ G+        +V   A  P  +N++    T S+   E   +G   I +      
Sbjct  173  DGIFVPGLLDPADIAALV---AAVPGPVNVLAGPGTLSV--AELAALGVARISYGNHLAR  227

Query  246  PALTAIREGMEKLK  259
             AL A+R   E++ 
Sbjct  228  AALAALRRAAEEIL  241


>CDD:278869 pfam00463, ICL, Isocitrate lyase family.  
Length=526

 Score = 94.9 bits (236),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)

Query  73   EMLANISPSTPVIADADTGYGGPIMVARTTEQYSRSGVAAFHIEDQVQ-TKRCGHLAGKI  131
               A +    P+IADADTG+GG   V + T+ +   G A  HIEDQ   TK+CGH+AGK+
Sbjct  141  AKTAYVDYLRPIIADADTGHGGLTAVVKLTKLFIERGAAGIHIEDQAPGTKKCGHMAGKV  200

Query  132  LVDKETYVSRIRAAVQARKRMGSDIVVIARTDA  164
            LV  + +++R+ A       MGSD++ +ARTD+
Sbjct  201  LVPIQEHINRLVAIRAQADIMGSDLLAVARTDS  233



Lambda      K        H        a         alpha
   0.318    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00010739

Length=322


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00010740

Length=305


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00010741

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00010743

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00010742

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00017312

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00017313

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  193     8e-60


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 193 bits (493),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 96/319 (30%), Positives = 151/319 (47%), Gaps = 18/319 (6%)

Query  31   GLRISSIFVIMVGSMLGAVFPVFARSFSTSKFLRRAFFVAKYFGSGVIIATAFIHLLGPA  90
             L+I +IF I++ S++G + P+     S  +   +   +   F SGV++ TAF+HLL  A
Sbjct  2    LLKIYAIFAILIISLIGGLLPLLVPKISKLRPSSKLLSLLLAFASGVLLGTAFLHLLPEA  61

Query  91   EEALTNECLTGPITEYSWVEGIILMTIVVLFFVELMV-MRYARFGHGHLDDLGHDDHTHP  149
             EAL + CL+     + +   I+L+  +++  VE ++     R   G  D+      T  
Sbjct  62   LEALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVK  121

Query  150  SLDAPPATV--ESKSHMPGEDHLGHSREH--------RDTESGRKASLIEEYSAQLTSVF  199
            S+     T   E + H     H   S E          D+   +     E  ++Q     
Sbjct  122  SVSNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAI  181

Query  200  ILEFGIIFHSIFIGLTLAV--SGEEFITLYIVLVFHQTFEGLGLGSRLATIPWPNSKRFT  257
            +LE GII HS F GL L V  S +  I+L+I ++FH+  EGLGLG+ L    +   K   
Sbjct  182  LLELGIILHSFFEGLALGVSSSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAV-  240

Query  258  PYLLGFAYGLSTPLAIAIGLGVRNSYPPEGYTTLVVNGVFDSISAGILIYTALVELMAHE  317
              LL   + L+TPL I IG+GV +          + +G+  + SAG  +Y ALVEL+ HE
Sbjct  241  --LLALLFALTTPLGILIGIGVSSI--GNSPGADITSGILLAFSAGTFLYVALVELLPHE  296

Query  318  FMFSPSMRKAPIRTVLAAF  336
             + + S  K  +  +LA  
Sbjct  297  LLRNKSSEKLSLLQLLALL  315



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00010748

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00010746

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00010747

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00017314

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  193     8e-60


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 193 bits (493),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 96/319 (30%), Positives = 151/319 (47%), Gaps = 18/319 (6%)

Query  31   GLRISSIFVIMVGSMLGAVFPVFARSFSTSKFLRRAFFVAKYFGSGVIIATAFIHLLGPA  90
             L+I +IF I++ S++G + P+     S  +   +   +   F SGV++ TAF+HLL  A
Sbjct  2    LLKIYAIFAILIISLIGGLLPLLVPKISKLRPSSKLLSLLLAFASGVLLGTAFLHLLPEA  61

Query  91   EEALTNECLTGPITEYSWVEGIILMTIVVLFFVELMV-MRYARFGHGHLDDLGHDDHTHP  149
             EAL + CL+     + +   I+L+  +++  VE ++     R   G  D+      T  
Sbjct  62   LEALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVK  121

Query  150  SLDAPPATV--ESKSHMPGEDHLGHSREH--------RDTESGRKASLIEEYSAQLTSVF  199
            S+     T   E + H     H   S E          D+   +     E  ++Q     
Sbjct  122  SVSNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAI  181

Query  200  ILEFGIIFHSIFIGLTLAV--SGEEFITLYIVLVFHQTFEGLGLGSRLATIPWPNSKRFT  257
            +LE GII HS F GL L V  S +  I+L+I ++FH+  EGLGLG+ L    +   K   
Sbjct  182  LLELGIILHSFFEGLALGVSSSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAV-  240

Query  258  PYLLGFAYGLSTPLAIAIGLGVRNSYPPEGYTTLVVNGVFDSISAGILIYTALVELMAHE  317
              LL   + L+TPL I IG+GV +          + +G+  + SAG  +Y ALVEL+ HE
Sbjct  241  --LLALLFALTTPLGILIGIGVSSI--GNSPGADITSGILLAFSAGTFLYVALVELLPHE  296

Query  318  FMFSPSMRKAPIRTVLAAF  336
             + + S  K  +  +LA  
Sbjct  297  LLRNKSSEKLSLLQLLALL  315



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00010749

Length=134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans...  143     4e-46


>CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase. 
 
Length=94

 Score = 143 bits (362),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 56/95 (59%), Positives = 66/95 (69%), Gaps = 3/95 (3%)

Query  32   CNRKTTKGDTVHMHYRGTLAADGSEFDSSYGRNQPLKFKLGAGRVIKGWDEGLLDMCVGE  91
               K  KGD V +HY GTL  DG+ FDSSY R +P +F LG+G+VI GWDEGL+ M VGE
Sbjct  1    GPEKAKKGDRVTVHYTGTLE-DGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGE  59

Query  92   KRTLTIPPEYGYGERGIGP--IPGGATLIFETELV  124
            KR LTIPPE  YGE G+    IP  ATL+FE EL+
Sbjct  60   KRKLTIPPELAYGEEGLAGPVIPPNATLVFEVELL  94



Lambda      K        H        a         alpha
   0.318    0.140    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00017315

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.146    0.492    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00017317

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00017316

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00017318

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00010750

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  193     8e-60


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 193 bits (493),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 96/319 (30%), Positives = 151/319 (47%), Gaps = 18/319 (6%)

Query  31   GLRISSIFVIMVGSMLGAVFPVFARSFSTSKFLRRAFFVAKYFGSGVIIATAFIHLLGPA  90
             L+I +IF I++ S++G + P+     S  +   +   +   F SGV++ TAF+HLL  A
Sbjct  2    LLKIYAIFAILIISLIGGLLPLLVPKISKLRPSSKLLSLLLAFASGVLLGTAFLHLLPEA  61

Query  91   EEALTNECLTGPITEYSWVEGIILMTIVVLFFVELMV-MRYARFGHGHLDDLGHDDHTHP  149
             EAL + CL+     + +   I+L+  +++  VE ++     R   G  D+      T  
Sbjct  62   LEALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVK  121

Query  150  SLDAPPATV--ESKSHMPGEDHLGHSREH--------RDTESGRKASLIEEYSAQLTSVF  199
            S+     T   E + H     H   S E          D+   +     E  ++Q     
Sbjct  122  SVSNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAI  181

Query  200  ILEFGIIFHSIFIGLTLAV--SGEEFITLYIVLVFHQTFEGLGLGSRLATIPWPNSKRFT  257
            +LE GII HS F GL L V  S +  I+L+I ++FH+  EGLGLG+ L    +   K   
Sbjct  182  LLELGIILHSFFEGLALGVSSSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAV-  240

Query  258  PYLLGFAYGLSTPLAIAIGLGVRNSYPPEGYTTLVVNGVFDSISAGILIYTALVELMAHE  317
              LL   + L+TPL I IG+GV +          + +G+  + SAG  +Y ALVEL+ HE
Sbjct  241  --LLALLFALTTPLGILIGIGVSSI--GNSPGADITSGILLAFSAGTFLYVALVELLPHE  296

Query  318  FMFSPSMRKAPIRTVLAAF  336
             + + S  K  +  +LA  
Sbjct  297  LLRNKSSEKLSLLQLLALL  315



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00010751

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  193     8e-60


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 193 bits (493),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 96/319 (30%), Positives = 151/319 (47%), Gaps = 18/319 (6%)

Query  31   GLRISSIFVIMVGSMLGAVFPVFARSFSTSKFLRRAFFVAKYFGSGVIIATAFIHLLGPA  90
             L+I +IF I++ S++G + P+     S  +   +   +   F SGV++ TAF+HLL  A
Sbjct  2    LLKIYAIFAILIISLIGGLLPLLVPKISKLRPSSKLLSLLLAFASGVLLGTAFLHLLPEA  61

Query  91   EEALTNECLTGPITEYSWVEGIILMTIVVLFFVELMV-MRYARFGHGHLDDLGHDDHTHP  149
             EAL + CL+     + +   I+L+  +++  VE ++     R   G  D+      T  
Sbjct  62   LEALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVK  121

Query  150  SLDAPPATV--ESKSHMPGEDHLGHSREH--------RDTESGRKASLIEEYSAQLTSVF  199
            S+     T   E + H     H   S E          D+   +     E  ++Q     
Sbjct  122  SVSNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAI  181

Query  200  ILEFGIIFHSIFIGLTLAV--SGEEFITLYIVLVFHQTFEGLGLGSRLATIPWPNSKRFT  257
            +LE GII HS F GL L V  S +  I+L+I ++FH+  EGLGLG+ L    +   K   
Sbjct  182  LLELGIILHSFFEGLALGVSSSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAV-  240

Query  258  PYLLGFAYGLSTPLAIAIGLGVRNSYPPEGYTTLVVNGVFDSISAGILIYTALVELMAHE  317
              LL   + L+TPL I IG+GV +          + +G+  + SAG  +Y ALVEL+ HE
Sbjct  241  --LLALLFALTTPLGILIGIGVSSI--GNSPGADITSGILLAFSAGTFLYVALVELLPHE  296

Query  318  FMFSPSMRKAPIRTVLAAF  336
             + + S  K  +  +LA  
Sbjct  297  LLRNKSSEKLSLLQLLALL  315



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00010752

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  193     8e-60


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 193 bits (493),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 96/319 (30%), Positives = 151/319 (47%), Gaps = 18/319 (6%)

Query  31   GLRISSIFVIMVGSMLGAVFPVFARSFSTSKFLRRAFFVAKYFGSGVIIATAFIHLLGPA  90
             L+I +IF I++ S++G + P+     S  +   +   +   F SGV++ TAF+HLL  A
Sbjct  2    LLKIYAIFAILIISLIGGLLPLLVPKISKLRPSSKLLSLLLAFASGVLLGTAFLHLLPEA  61

Query  91   EEALTNECLTGPITEYSWVEGIILMTIVVLFFVELMV-MRYARFGHGHLDDLGHDDHTHP  149
             EAL + CL+     + +   I+L+  +++  VE ++     R   G  D+      T  
Sbjct  62   LEALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVK  121

Query  150  SLDAPPATV--ESKSHMPGEDHLGHSREH--------RDTESGRKASLIEEYSAQLTSVF  199
            S+     T   E + H     H   S E          D+   +     E  ++Q     
Sbjct  122  SVSNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAI  181

Query  200  ILEFGIIFHSIFIGLTLAV--SGEEFITLYIVLVFHQTFEGLGLGSRLATIPWPNSKRFT  257
            +LE GII HS F GL L V  S +  I+L+I ++FH+  EGLGLG+ L    +   K   
Sbjct  182  LLELGIILHSFFEGLALGVSSSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAV-  240

Query  258  PYLLGFAYGLSTPLAIAIGLGVRNSYPPEGYTTLVVNGVFDSISAGILIYTALVELMAHE  317
              LL   + L+TPL I IG+GV +          + +G+  + SAG  +Y ALVEL+ HE
Sbjct  241  --LLALLFALTTPLGILIGIGVSSI--GNSPGADITSGILLAFSAGTFLYVALVELLPHE  296

Query  318  FMFSPSMRKAPIRTVLAAF  336
             + + S  K  +  +LA  
Sbjct  297  LLRNKSSEKLSLLQLLALL  315



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00017319

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  193     8e-60


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 193 bits (493),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 96/319 (30%), Positives = 151/319 (47%), Gaps = 18/319 (6%)

Query  31   GLRISSIFVIMVGSMLGAVFPVFARSFSTSKFLRRAFFVAKYFGSGVIIATAFIHLLGPA  90
             L+I +IF I++ S++G + P+     S  +   +   +   F SGV++ TAF+HLL  A
Sbjct  2    LLKIYAIFAILIISLIGGLLPLLVPKISKLRPSSKLLSLLLAFASGVLLGTAFLHLLPEA  61

Query  91   EEALTNECLTGPITEYSWVEGIILMTIVVLFFVELMV-MRYARFGHGHLDDLGHDDHTHP  149
             EAL + CL+     + +   I+L+  +++  VE ++     R   G  D+      T  
Sbjct  62   LEALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVK  121

Query  150  SLDAPPATV--ESKSHMPGEDHLGHSREH--------RDTESGRKASLIEEYSAQLTSVF  199
            S+     T   E + H     H   S E          D+   +     E  ++Q     
Sbjct  122  SVSNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAI  181

Query  200  ILEFGIIFHSIFIGLTLAV--SGEEFITLYIVLVFHQTFEGLGLGSRLATIPWPNSKRFT  257
            +LE GII HS F GL L V  S +  I+L+I ++FH+  EGLGLG+ L    +   K   
Sbjct  182  LLELGIILHSFFEGLALGVSSSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAV-  240

Query  258  PYLLGFAYGLSTPLAIAIGLGVRNSYPPEGYTTLVVNGVFDSISAGILIYTALVELMAHE  317
              LL   + L+TPL I IG+GV +          + +G+  + SAG  +Y ALVEL+ HE
Sbjct  241  --LLALLFALTTPLGILIGIGVSSI--GNSPGADITSGILLAFSAGTFLYVALVELLPHE  296

Query  318  FMFSPSMRKAPIRTVLAAF  336
             + + S  K  +  +LA  
Sbjct  297  LLRNKSSEKLSLLQLLALL  315



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00010753

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  193     8e-60


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 193 bits (493),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 96/319 (30%), Positives = 151/319 (47%), Gaps = 18/319 (6%)

Query  31   GLRISSIFVIMVGSMLGAVFPVFARSFSTSKFLRRAFFVAKYFGSGVIIATAFIHLLGPA  90
             L+I +IF I++ S++G + P+     S  +   +   +   F SGV++ TAF+HLL  A
Sbjct  2    LLKIYAIFAILIISLIGGLLPLLVPKISKLRPSSKLLSLLLAFASGVLLGTAFLHLLPEA  61

Query  91   EEALTNECLTGPITEYSWVEGIILMTIVVLFFVELMV-MRYARFGHGHLDDLGHDDHTHP  149
             EAL + CL+     + +   I+L+  +++  VE ++     R   G  D+      T  
Sbjct  62   LEALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVK  121

Query  150  SLDAPPATV--ESKSHMPGEDHLGHSREH--------RDTESGRKASLIEEYSAQLTSVF  199
            S+     T   E + H     H   S E          D+   +     E  ++Q     
Sbjct  122  SVSNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAI  181

Query  200  ILEFGIIFHSIFIGLTLAV--SGEEFITLYIVLVFHQTFEGLGLGSRLATIPWPNSKRFT  257
            +LE GII HS F GL L V  S +  I+L+I ++FH+  EGLGLG+ L    +   K   
Sbjct  182  LLELGIILHSFFEGLALGVSSSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAV-  240

Query  258  PYLLGFAYGLSTPLAIAIGLGVRNSYPPEGYTTLVVNGVFDSISAGILIYTALVELMAHE  317
              LL   + L+TPL I IG+GV +          + +G+  + SAG  +Y ALVEL+ HE
Sbjct  241  --LLALLFALTTPLGILIGIGVSSI--GNSPGADITSGILLAFSAGTFLYVALVELLPHE  296

Query  318  FMFSPSMRKAPIRTVLAAF  336
             + + S  K  +  +LA  
Sbjct  297  LLRNKSSEKLSLLQLLALL  315



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00010754

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  193     8e-60


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 193 bits (493),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 96/319 (30%), Positives = 151/319 (47%), Gaps = 18/319 (6%)

Query  31   GLRISSIFVIMVGSMLGAVFPVFARSFSTSKFLRRAFFVAKYFGSGVIIATAFIHLLGPA  90
             L+I +IF I++ S++G + P+     S  +   +   +   F SGV++ TAF+HLL  A
Sbjct  2    LLKIYAIFAILIISLIGGLLPLLVPKISKLRPSSKLLSLLLAFASGVLLGTAFLHLLPEA  61

Query  91   EEALTNECLTGPITEYSWVEGIILMTIVVLFFVELMV-MRYARFGHGHLDDLGHDDHTHP  149
             EAL + CL+     + +   I+L+  +++  VE ++     R   G  D+      T  
Sbjct  62   LEALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVK  121

Query  150  SLDAPPATV--ESKSHMPGEDHLGHSREH--------RDTESGRKASLIEEYSAQLTSVF  199
            S+     T   E + H     H   S E          D+   +     E  ++Q     
Sbjct  122  SVSNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAI  181

Query  200  ILEFGIIFHSIFIGLTLAV--SGEEFITLYIVLVFHQTFEGLGLGSRLATIPWPNSKRFT  257
            +LE GII HS F GL L V  S +  I+L+I ++FH+  EGLGLG+ L    +   K   
Sbjct  182  LLELGIILHSFFEGLALGVSSSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAV-  240

Query  258  PYLLGFAYGLSTPLAIAIGLGVRNSYPPEGYTTLVVNGVFDSISAGILIYTALVELMAHE  317
              LL   + L+TPL I IG+GV +          + +G+  + SAG  +Y ALVEL+ HE
Sbjct  241  --LLALLFALTTPLGILIGIGVSSI--GNSPGADITSGILLAFSAGTFLYVALVELLPHE  296

Query  318  FMFSPSMRKAPIRTVLAAF  336
             + + S  K  +  +LA  
Sbjct  297  LLRNKSSEKLSLLQLLALL  315



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0826    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00010755

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  193     8e-60


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 193 bits (493),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 96/319 (30%), Positives = 151/319 (47%), Gaps = 18/319 (6%)

Query  31   GLRISSIFVIMVGSMLGAVFPVFARSFSTSKFLRRAFFVAKYFGSGVIIATAFIHLLGPA  90
             L+I +IF I++ S++G + P+     S  +   +   +   F SGV++ TAF+HLL  A
Sbjct  2    LLKIYAIFAILIISLIGGLLPLLVPKISKLRPSSKLLSLLLAFASGVLLGTAFLHLLPEA  61

Query  91   EEALTNECLTGPITEYSWVEGIILMTIVVLFFVELMV-MRYARFGHGHLDDLGHDDHTHP  149
             EAL + CL+     + +   I+L+  +++  VE ++     R   G  D+      T  
Sbjct  62   LEALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVK  121

Query  150  SLDAPPATV--ESKSHMPGEDHLGHSREH--------RDTESGRKASLIEEYSAQLTSVF  199
            S+     T   E + H     H   S E          D+   +     E  ++Q     
Sbjct  122  SVSNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAI  181

Query  200  ILEFGIIFHSIFIGLTLAV--SGEEFITLYIVLVFHQTFEGLGLGSRLATIPWPNSKRFT  257
            +LE GII HS F GL L V  S +  I+L+I ++FH+  EGLGLG+ L    +   K   
Sbjct  182  LLELGIILHSFFEGLALGVSSSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAV-  240

Query  258  PYLLGFAYGLSTPLAIAIGLGVRNSYPPEGYTTLVVNGVFDSISAGILIYTALVELMAHE  317
              LL   + L+TPL I IG+GV +          + +G+  + SAG  +Y ALVEL+ HE
Sbjct  241  --LLALLFALTTPLGILIGIGVSSI--GNSPGADITSGILLAFSAGTFLYVALVELLPHE  296

Query  318  FMFSPSMRKAPIRTVLAAF  336
             + + S  K  +  +LA  
Sbjct  297  LLRNKSSEKLSLLQLLALL  315



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00010757

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  94.3    2e-24


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 94.3 bits (235),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 17/154 (11%)

Query  5    RISGSELVSDHASRNLHLLLAKRPEFDQG-DYEAAIRGALIDEDAVLLETFNNVTTEPAV  63
               GSE  + +  ++LH +LA R  F +G   E A+R + +       E   +   E   
Sbjct  42   GHGGSE-AAKYCGKHLHTILALRRSFLEGEKLEDALRKSFL---EDTDEVLRSAEKEDLD  97

Query  64   SGSTVALCFVNLTKGDLVVANLGDSHVLLAERDNRTDHPSHIRRLSKSHKPDTPDEKSRI  123
            SG T  +  ++  K  L VAN+GDS  +L    N         RL+K HKP   DE+ RI
Sbjct  98   SGCTAVVALISGNK--LYVANVGDSRAVLC--RNGNAIK----RLTKDHKPSDEDERRRI  149

Query  124  EDAGGAVNTRRGTARL-GSLNMSRALGDLQYKNP  156
              AGG V+ R G  R+ G L +SRA GD + K  
Sbjct  150  RAAGGFVS-RNG--RVNGVLAVSRAFGDFELKPG  180



Lambda      K        H        a         alpha
   0.312    0.129    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00010756

Length=134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans...  143     4e-46


>CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase. 
 
Length=94

 Score = 143 bits (362),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 56/95 (59%), Positives = 66/95 (69%), Gaps = 3/95 (3%)

Query  32   CNRKTTKGDTVHMHYRGTLAADGSEFDSSYGRNQPLKFKLGAGRVIKGWDEGLLDMCVGE  91
               K  KGD V +HY GTL  DG+ FDSSY R +P +F LG+G+VI GWDEGL+ M VGE
Sbjct  1    GPEKAKKGDRVTVHYTGTLE-DGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGE  59

Query  92   KRTLTIPPEYGYGERGIGP--IPGGATLIFETELV  124
            KR LTIPPE  YGE G+    IP  ATL+FE EL+
Sbjct  60   KRKLTIPPELAYGEEGLAGPVIPPNATLVFEVELL  94



Lambda      K        H        a         alpha
   0.318    0.140    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00017321

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  193     8e-60


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 193 bits (493),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 96/319 (30%), Positives = 151/319 (47%), Gaps = 18/319 (6%)

Query  31   GLRISSIFVIMVGSMLGAVFPVFARSFSTSKFLRRAFFVAKYFGSGVIIATAFIHLLGPA  90
             L+I +IF I++ S++G + P+     S  +   +   +   F SGV++ TAF+HLL  A
Sbjct  2    LLKIYAIFAILIISLIGGLLPLLVPKISKLRPSSKLLSLLLAFASGVLLGTAFLHLLPEA  61

Query  91   EEALTNECLTGPITEYSWVEGIILMTIVVLFFVELMV-MRYARFGHGHLDDLGHDDHTHP  149
             EAL + CL+     + +   I+L+  +++  VE ++     R   G  D+      T  
Sbjct  62   LEALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVK  121

Query  150  SLDAPPATV--ESKSHMPGEDHLGHSREH--------RDTESGRKASLIEEYSAQLTSVF  199
            S+     T   E + H     H   S E          D+   +     E  ++Q     
Sbjct  122  SVSNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAI  181

Query  200  ILEFGIIFHSIFIGLTLAV--SGEEFITLYIVLVFHQTFEGLGLGSRLATIPWPNSKRFT  257
            +LE GII HS F GL L V  S +  I+L+I ++FH+  EGLGLG+ L    +   K   
Sbjct  182  LLELGIILHSFFEGLALGVSSSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAV-  240

Query  258  PYLLGFAYGLSTPLAIAIGLGVRNSYPPEGYTTLVVNGVFDSISAGILIYTALVELMAHE  317
              LL   + L+TPL I IG+GV +          + +G+  + SAG  +Y ALVEL+ HE
Sbjct  241  --LLALLFALTTPLGILIGIGVSSI--GNSPGADITSGILLAFSAGTFLYVALVELLPHE  296

Query  318  FMFSPSMRKAPIRTVLAAF  336
             + + S  K  +  +LA  
Sbjct  297  LLRNKSSEKLSLLQLLALL  315



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00017322

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  193     8e-60


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 193 bits (493),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 96/319 (30%), Positives = 151/319 (47%), Gaps = 18/319 (6%)

Query  31   GLRISSIFVIMVGSMLGAVFPVFARSFSTSKFLRRAFFVAKYFGSGVIIATAFIHLLGPA  90
             L+I +IF I++ S++G + P+     S  +   +   +   F SGV++ TAF+HLL  A
Sbjct  2    LLKIYAIFAILIISLIGGLLPLLVPKISKLRPSSKLLSLLLAFASGVLLGTAFLHLLPEA  61

Query  91   EEALTNECLTGPITEYSWVEGIILMTIVVLFFVELMV-MRYARFGHGHLDDLGHDDHTHP  149
             EAL + CL+     + +   I+L+  +++  VE ++     R   G  D+      T  
Sbjct  62   LEALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVK  121

Query  150  SLDAPPATV--ESKSHMPGEDHLGHSREH--------RDTESGRKASLIEEYSAQLTSVF  199
            S+     T   E + H     H   S E          D+   +     E  ++Q     
Sbjct  122  SVSNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAI  181

Query  200  ILEFGIIFHSIFIGLTLAV--SGEEFITLYIVLVFHQTFEGLGLGSRLATIPWPNSKRFT  257
            +LE GII HS F GL L V  S +  I+L+I ++FH+  EGLGLG+ L    +   K   
Sbjct  182  LLELGIILHSFFEGLALGVSSSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAV-  240

Query  258  PYLLGFAYGLSTPLAIAIGLGVRNSYPPEGYTTLVVNGVFDSISAGILIYTALVELMAHE  317
              LL   + L+TPL I IG+GV +          + +G+  + SAG  +Y ALVEL+ HE
Sbjct  241  --LLALLFALTTPLGILIGIGVSSI--GNSPGADITSGILLAFSAGTFLYVALVELLPHE  296

Query  318  FMFSPSMRKAPIRTVLAAF  336
             + + S  K  +  +LA  
Sbjct  297  LLRNKSSEKLSLLQLLALL  315



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00010758

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  193     8e-60


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 193 bits (493),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 96/319 (30%), Positives = 151/319 (47%), Gaps = 18/319 (6%)

Query  31   GLRISSIFVIMVGSMLGAVFPVFARSFSTSKFLRRAFFVAKYFGSGVIIATAFIHLLGPA  90
             L+I +IF I++ S++G + P+     S  +   +   +   F SGV++ TAF+HLL  A
Sbjct  2    LLKIYAIFAILIISLIGGLLPLLVPKISKLRPSSKLLSLLLAFASGVLLGTAFLHLLPEA  61

Query  91   EEALTNECLTGPITEYSWVEGIILMTIVVLFFVELMV-MRYARFGHGHLDDLGHDDHTHP  149
             EAL + CL+     + +   I+L+  +++  VE ++     R   G  D+      T  
Sbjct  62   LEALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVK  121

Query  150  SLDAPPATV--ESKSHMPGEDHLGHSREH--------RDTESGRKASLIEEYSAQLTSVF  199
            S+     T   E + H     H   S E          D+   +     E  ++Q     
Sbjct  122  SVSNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAI  181

Query  200  ILEFGIIFHSIFIGLTLAV--SGEEFITLYIVLVFHQTFEGLGLGSRLATIPWPNSKRFT  257
            +LE GII HS F GL L V  S +  I+L+I ++FH+  EGLGLG+ L    +   K   
Sbjct  182  LLELGIILHSFFEGLALGVSSSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAV-  240

Query  258  PYLLGFAYGLSTPLAIAIGLGVRNSYPPEGYTTLVVNGVFDSISAGILIYTALVELMAHE  317
              LL   + L+TPL I IG+GV +          + +G+  + SAG  +Y ALVEL+ HE
Sbjct  241  --LLALLFALTTPLGILIGIGVSSI--GNSPGADITSGILLAFSAGTFLYVALVELLPHE  296

Query  318  FMFSPSMRKAPIRTVLAAF  336
             + + S  K  +  +LA  
Sbjct  297  LLRNKSSEKLSLLQLLALL  315



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00010759

Length=134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans...  143     4e-46


>CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase. 
 
Length=94

 Score = 143 bits (362),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 56/95 (59%), Positives = 66/95 (69%), Gaps = 3/95 (3%)

Query  32   CNRKTTKGDTVHMHYRGTLAADGSEFDSSYGRNQPLKFKLGAGRVIKGWDEGLLDMCVGE  91
               K  KGD V +HY GTL  DG+ FDSSY R +P +F LG+G+VI GWDEGL+ M VGE
Sbjct  1    GPEKAKKGDRVTVHYTGTLE-DGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGE  59

Query  92   KRTLTIPPEYGYGERGIGP--IPGGATLIFETELV  124
            KR LTIPPE  YGE G+    IP  ATL+FE EL+
Sbjct  60   KRKLTIPPELAYGEEGLAGPVIPPNATLVFEVELL  94



Lambda      K        H        a         alpha
   0.318    0.140    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00017324

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans...  73.0    2e-19


>CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase. 
 
Length=94

 Score = 73.0 bits (180),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 32/48 (67%), Gaps = 1/48 (2%)

Query  32  CNRKTTKGDTVHMHYRGTLAADGSEFDSSYGRNQPLKFKLGAGRVIKG  79
              K  KGD V +HY GTL  DG+ FDSSY R +P +F LG+G+VI G
Sbjct  1   GPEKAKKGDRVTVHYTGTLE-DGTVFDSSYDRGKPFEFTLGSGQVIPG  47



Lambda      K        H        a         alpha
   0.321    0.137    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00017323

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans...  73.0    2e-19


>CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase. 
 
Length=94

 Score = 73.0 bits (180),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 32/48 (67%), Gaps = 1/48 (2%)

Query  32  CNRKTTKGDTVHMHYRGTLAADGSEFDSSYGRNQPLKFKLGAGRVIKG  79
              K  KGD V +HY GTL  DG+ FDSSY R +P +F LG+G+VI G
Sbjct  1   GPEKAKKGDRVTVHYTGTLE-DGTVFDSSYDRGKPFEFTLGSGQVIPG  47



Lambda      K        H        a         alpha
   0.321    0.137    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00017326

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans...  73.0    2e-19


>CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase. 
 
Length=94

 Score = 73.0 bits (180),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 32/48 (67%), Gaps = 1/48 (2%)

Query  32  CNRKTTKGDTVHMHYRGTLAADGSEFDSSYGRNQPLKFKLGAGRVIKG  79
              K  KGD V +HY GTL  DG+ FDSSY R +P +F LG+G+VI G
Sbjct  1   GPEKAKKGDRVTVHYTGTLE-DGTVFDSSYDRGKPFEFTLGSGQVIPG  47



Lambda      K        H        a         alpha
   0.321    0.137    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00017325

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans...  73.0    2e-19


>CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase. 
 
Length=94

 Score = 73.0 bits (180),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 32/48 (67%), Gaps = 1/48 (2%)

Query  32  CNRKTTKGDTVHMHYRGTLAADGSEFDSSYGRNQPLKFKLGAGRVIKG  79
              K  KGD V +HY GTL  DG+ FDSSY R +P +F LG+G+VI G
Sbjct  1   GPEKAKKGDRVTVHYTGTLE-DGTVFDSSYDRGKPFEFTLGSGQVIPG  47



Lambda      K        H        a         alpha
   0.321    0.137    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00010760

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans...  73.0    2e-19


>CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase. 
 
Length=94

 Score = 73.0 bits (180),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 32/48 (67%), Gaps = 1/48 (2%)

Query  32  CNRKTTKGDTVHMHYRGTLAADGSEFDSSYGRNQPLKFKLGAGRVIKG  79
              K  KGD V +HY GTL  DG+ FDSSY R +P +F LG+G+VI G
Sbjct  1   GPEKAKKGDRVTVHYTGTLE-DGTVFDSSYDRGKPFEFTLGSGQVIPG  47



Lambda      K        H        a         alpha
   0.321    0.137    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00017328

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans...  139     5e-45


>CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase. 
 
Length=94

 Score = 139 bits (353),  Expect = 5e-45, Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 64/93 (69%), Gaps = 3/93 (3%)

Query  32   CNRKTTKGDTVHMHYRGTLAADGSEFDSSYGRNQPLKFKLGAGRVIKGWDEGLLDMCVGE  91
               K  KGD V +HY GTL  DG+ FDSSY R +P +F LG+G+VI GWDEGL+ M VGE
Sbjct  1    GPEKAKKGDRVTVHYTGTLE-DGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGE  59

Query  92   KRTLTIPPEYGYGERGIGP--IPGGATLIFETE  122
            KR LTIPPE  YGE G+    IP  ATL+FE E
Sbjct  60   KRKLTIPPELAYGEEGLAGPVIPPNATLVFEVE  92



Lambda      K        H        a         alpha
   0.319    0.140    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00010761

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans...  73.0    2e-19


>CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase. 
 
Length=94

 Score = 73.0 bits (180),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 32/48 (67%), Gaps = 1/48 (2%)

Query  32  CNRKTTKGDTVHMHYRGTLAADGSEFDSSYGRNQPLKFKLGAGRVIKG  79
              K  KGD V +HY GTL  DG+ FDSSY R +P +F LG+G+VI G
Sbjct  1   GPEKAKKGDRVTVHYTGTLE-DGTVFDSSYDRGKPFEFTLGSGQVIPG  47



Lambda      K        H        a         alpha
   0.321    0.137    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00010762

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans...  139     5e-45


>CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase. 
 
Length=94

 Score = 139 bits (353),  Expect = 5e-45, Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 64/93 (69%), Gaps = 3/93 (3%)

Query  32   CNRKTTKGDTVHMHYRGTLAADGSEFDSSYGRNQPLKFKLGAGRVIKGWDEGLLDMCVGE  91
               K  KGD V +HY GTL  DG+ FDSSY R +P +F LG+G+VI GWDEGL+ M VGE
Sbjct  1    GPEKAKKGDRVTVHYTGTLE-DGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGE  59

Query  92   KRTLTIPPEYGYGERGIGP--IPGGATLIFETE  122
            KR LTIPPE  YGE G+    IP  ATL+FE E
Sbjct  60   KRKLTIPPELAYGEEGLAGPVIPPNATLVFEVE  92



Lambda      K        H        a         alpha
   0.319    0.140    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00010763

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans...  73.0    2e-19


>CDD:459735 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase. 
 
Length=94

 Score = 73.0 bits (180),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 32/48 (67%), Gaps = 1/48 (2%)

Query  32  CNRKTTKGDTVHMHYRGTLAADGSEFDSSYGRNQPLKFKLGAGRVIKG  79
              K  KGD V +HY GTL  DG+ FDSSY R +P +F LG+G+VI G
Sbjct  1   GPEKAKKGDRVTVHYTGTLE-DGTVFDSSYDRGKPFEFTLGSGQVIPG  47



Lambda      K        H        a         alpha
   0.321    0.137    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00017329

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  98.2    4e-25


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 98.2 bits (245),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 103/240 (43%), Gaps = 44/240 (18%)

Query  5    RISGSELVSDHASRNLHLLLAKRPEFDQG-DYEAAIRGALIDEDAVLLETFNNVTTEPAV  63
               GSE  + +  ++LH +LA R  F +G   E A+R + +       E   +   E   
Sbjct  42   GHGGSE-AAKYCGKHLHTILALRRSFLEGEKLEDALRKSFL---EDTDEVLRSAEKEDLD  97

Query  64   SGSTVALCFVNLTKGDLVVANLGDSHVLLAERDNRTDHPSHIRRLSKSHKPDTPDEKSRI  123
            SG T  +  ++  K  L VAN+GDS  +L    N         RL+K HKP   DE+ RI
Sbjct  98   SGCTAVVALISGNK--LYVANVGDSRAVLC--RNGNAIK----RLTKDHKPSDEDERRRI  149

Query  124  EDAGGAVNTRRGTARL-GSLNMSRALGDLQYKNPINNAGDEYSSSKTRRASASTSAPETR  182
              AGG V+ R G  R+ G L +SRA GD + K                            
Sbjct  150  RAAGGFVS-RNG--RVNGVLAVSRAFGDFELKPG--------------------------  180

Query  183  GNFLSVEPHMTRMTLSPDRRYLVVVTSDGVSDNIDDATLIHHVMRLSMRGMRAGDIAQEI  242
               +S EP +T  T++ D  +L++   DG+ D + D  ++  V      G    + A+E+
Sbjct  181  EQAVSAEPDITSHTITEDDEFLILA-CDGLWDVLSDQEVVDLVRSELSDGGSPMEAAEEL  239



Lambda      K        H        a         alpha
   0.314    0.129    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00017330

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395385 pfam00481, PP2C, Protein phosphatase 2C. Protein phosp...  127     2e-35


>CDD:395385 pfam00481, PP2C, Protein phosphatase 2C.  Protein phosphatase 
2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.
Length=252

 Score = 127 bits (320),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 83/281 (30%), Positives = 124/281 (44%), Gaps = 44/281 (16%)

Query  16   FDAGAGQVQGARPFQEDRCTFVLPDQFPSQTNDKLTYFAVYDGHGSELVSDHASRNLHLL  75
             D G  ++QG R   ED     LP+   S   D  ++FAV+DGHG    + +  ++LH +
Sbjct  1    IDLGGPRMQGWRKSMEDAH-IDLPNLNSSSGKDSWSFFAVFDGHGGSEAAKYCGKHLHTI  59

Query  76   LAKRPEFDQG-DYEAAIRGALIDEDAVLLETFNNVTTEPAVSGSTVALCFVNLTKGDLVV  134
            LA R  F +G   E A+R + +       E   +   E   SG T  +  ++  K  L V
Sbjct  60   LALRRSFLEGEKLEDALRKSFL---EDTDEVLRSAEKEDLDSGCTAVVALISGNK--LYV  114

Query  135  ANLGDSHVLLAERDNRTDHPSHIVRLSKSHKPDTPDEKSRIEDAGGAVNTRRGTARL-GS  193
            AN+GDS  +L    N         RL+K HKP   DE+ RI  AGG V+ R G  R+ G 
Sbjct  115  ANVGDSRAVLC--RNGNAIK----RLTKDHKPSDEDERRRIRAAGGFVS-RNG--RVNGV  165

Query  194  LNMSRALGDLQYKNPINNAGDEYSSSKTRRASASTSAPETRGNFLSVEPHMTRMTLSPDR  253
            L +SRA GD + K                               +S EP +T  T++ D 
Sbjct  166  LAVSRAFGDFELKPG--------------------------EQAVSAEPDITSHTITEDD  199

Query  254  RYLVVVTSDGVSDNIDDATLIHHVMRLSMRGMRAGDIAQEI  294
             +L++   DG+ D + D  ++  V      G    + A+E+
Sbjct  200  EFLILA-CDGLWDVLSDQEVVDLVRSELSDGGSPMEAAEEL  239



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00010766

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. ...  154     1e-45


>CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family.  This family 
includes amidohydrolases of formamide EC:3.5.1.49 and 
acetamide. Methylophilus methylotrophus FmdA forms a homotrimer 
suggesting all the members of this family also do.
Length=271

 Score = 154 bits (391),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 83/280 (30%), Positives = 128/280 (46%), Gaps = 45/280 (16%)

Query  62   DIAATNPVFGPVYIQNAQPGDTLKVEVI---ALETADWGWTAT---IPGFGLLADEFSDP  115
            D+   + + GPV ++ A+PGD L V+++    L  A WG+T       G G L D F + 
Sbjct  4    DLTGVHYLSGPVAVEGAEPGDLLVVDILDIGPLPEAPWGYTGIFAKENGGGFLTDHFPEA  63

Query  116  SLHIWQINKERGYAVFKD--NIRIPLRPFLGCIGLAP---------ATDEDLSTVPPTNA  164
            +  IW    E  YA  +    +R    P  G IG AP         A + +L     T  
Sbjct  64   AKAIWDF--EGIYATSRHIPGVRFRGLPHPGLIGTAPSAELLDSWNAREGELIA---TEN  118

Query  165  GGNLDCRDLTVGATLYLPVQTDGALFSCGDGHAAQGHGEV--CGTAIETSIKATLRFELC  222
            GGN D ++L+ G+ +Y PV  +GA  S GD H +QG GE+  CG AIE +   TL+ ++ 
Sbjct  119  GGNCDIKNLSRGSRVYFPVFVEGAGLSVGDLHFSQGDGEITFCG-AIEMAGVVTLKVDVI  177

Query  223  KD-MPW--VTSPQYETPPSLLTTRMPVFGEY-ATTGVGQT---------LHEASKTAVRN  269
            K  M    + +P +   P       P + EY +  G+               A + A   
Sbjct  178  KGGMAKYGIKNPIFLPGPVE-----PRYSEYLSFEGISVDESGKQHYLDATVAYRNACLR  232

Query  270  IIQWMVATKGLTHCEAYMIASVAG-DLQIIEAVNMPNYVV  308
             I+++    G T  +AY++ SVA  + +I   V++PN   
Sbjct  233  AIEYL-KKFGYTGEQAYLLLSVAPVEGRISGIVDIPNACA  271



Lambda      K        H        a         alpha
   0.318    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00010765

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. ...  154     1e-45


>CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family.  This family 
includes amidohydrolases of formamide EC:3.5.1.49 and 
acetamide. Methylophilus methylotrophus FmdA forms a homotrimer 
suggesting all the members of this family also do.
Length=271

 Score = 154 bits (391),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 83/280 (30%), Positives = 128/280 (46%), Gaps = 45/280 (16%)

Query  62   DIAATNPVFGPVYIQNAQPGDTLKVEVI---ALETADWGWTAT---IPGFGLLADEFSDP  115
            D+   + + GPV ++ A+PGD L V+++    L  A WG+T       G G L D F + 
Sbjct  4    DLTGVHYLSGPVAVEGAEPGDLLVVDILDIGPLPEAPWGYTGIFAKENGGGFLTDHFPEA  63

Query  116  SLHIWQINKERGYAVFKD--NIRIPLRPFLGCIGLAP---------ATDEDLSTVPPTNA  164
            +  IW    E  YA  +    +R    P  G IG AP         A + +L     T  
Sbjct  64   AKAIWDF--EGIYATSRHIPGVRFRGLPHPGLIGTAPSAELLDSWNAREGELIA---TEN  118

Query  165  GGNLDCRDLTVGATLYLPVQTDGALFSCGDGHAAQGHGEV--CGTAIETSIKATLRFELC  222
            GGN D ++L+ G+ +Y PV  +GA  S GD H +QG GE+  CG AIE +   TL+ ++ 
Sbjct  119  GGNCDIKNLSRGSRVYFPVFVEGAGLSVGDLHFSQGDGEITFCG-AIEMAGVVTLKVDVI  177

Query  223  KD-MPW--VTSPQYETPPSLLTTRMPVFGEY-ATTGVGQT---------LHEASKTAVRN  269
            K  M    + +P +   P       P + EY +  G+               A + A   
Sbjct  178  KGGMAKYGIKNPIFLPGPVE-----PRYSEYLSFEGISVDESGKQHYLDATVAYRNACLR  232

Query  270  IIQWMVATKGLTHCEAYMIASVAG-DLQIIEAVNMPNYVV  308
             I+++    G T  +AY++ SVA  + +I   V++PN   
Sbjct  233  AIEYL-KKFGYTGEQAYLLLSVAPVEGRISGIVDIPNACA  271



Lambda      K        H        a         alpha
   0.318    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00010764

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. ...  154     1e-45


>CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family.  This family 
includes amidohydrolases of formamide EC:3.5.1.49 and 
acetamide. Methylophilus methylotrophus FmdA forms a homotrimer 
suggesting all the members of this family also do.
Length=271

 Score = 154 bits (391),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 83/280 (30%), Positives = 128/280 (46%), Gaps = 45/280 (16%)

Query  62   DIAATNPVFGPVYIQNAQPGDTLKVEVI---ALETADWGWTAT---IPGFGLLADEFSDP  115
            D+   + + GPV ++ A+PGD L V+++    L  A WG+T       G G L D F + 
Sbjct  4    DLTGVHYLSGPVAVEGAEPGDLLVVDILDIGPLPEAPWGYTGIFAKENGGGFLTDHFPEA  63

Query  116  SLHIWQINKERGYAVFKD--NIRIPLRPFLGCIGLAP---------ATDEDLSTVPPTNA  164
            +  IW    E  YA  +    +R    P  G IG AP         A + +L     T  
Sbjct  64   AKAIWDF--EGIYATSRHIPGVRFRGLPHPGLIGTAPSAELLDSWNAREGELIA---TEN  118

Query  165  GGNLDCRDLTVGATLYLPVQTDGALFSCGDGHAAQGHGEV--CGTAIETSIKATLRFELC  222
            GGN D ++L+ G+ +Y PV  +GA  S GD H +QG GE+  CG AIE +   TL+ ++ 
Sbjct  119  GGNCDIKNLSRGSRVYFPVFVEGAGLSVGDLHFSQGDGEITFCG-AIEMAGVVTLKVDVI  177

Query  223  KD-MPW--VTSPQYETPPSLLTTRMPVFGEY-ATTGVGQT---------LHEASKTAVRN  269
            K  M    + +P +   P       P + EY +  G+               A + A   
Sbjct  178  KGGMAKYGIKNPIFLPGPVE-----PRYSEYLSFEGISVDESGKQHYLDATVAYRNACLR  232

Query  270  IIQWMVATKGLTHCEAYMIASVAG-DLQIIEAVNMPNYVV  308
             I+++    G T  +AY++ SVA  + +I   V++PN   
Sbjct  233  AIEYL-KKFGYTGEQAYLLLSVAPVEGRISGIVDIPNACA  271



Lambda      K        H        a         alpha
   0.318    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00017332

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00010769

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. ...  154     1e-45


>CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family.  This family 
includes amidohydrolases of formamide EC:3.5.1.49 and 
acetamide. Methylophilus methylotrophus FmdA forms a homotrimer 
suggesting all the members of this family also do.
Length=271

 Score = 154 bits (391),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 83/280 (30%), Positives = 128/280 (46%), Gaps = 45/280 (16%)

Query  62   DIAATNPVFGPVYIQNAQPGDTLKVEVI---ALETADWGWTAT---IPGFGLLADEFSDP  115
            D+   + + GPV ++ A+PGD L V+++    L  A WG+T       G G L D F + 
Sbjct  4    DLTGVHYLSGPVAVEGAEPGDLLVVDILDIGPLPEAPWGYTGIFAKENGGGFLTDHFPEA  63

Query  116  SLHIWQINKERGYAVFKD--NIRIPLRPFLGCIGLAP---------ATDEDLSTVPPTNA  164
            +  IW    E  YA  +    +R    P  G IG AP         A + +L     T  
Sbjct  64   AKAIWDF--EGIYATSRHIPGVRFRGLPHPGLIGTAPSAELLDSWNAREGELIA---TEN  118

Query  165  GGNLDCRDLTVGATLYLPVQTDGALFSCGDGHAAQGHGEV--CGTAIETSIKATLRFELC  222
            GGN D ++L+ G+ +Y PV  +GA  S GD H +QG GE+  CG AIE +   TL+ ++ 
Sbjct  119  GGNCDIKNLSRGSRVYFPVFVEGAGLSVGDLHFSQGDGEITFCG-AIEMAGVVTLKVDVI  177

Query  223  KD-MPW--VTSPQYETPPSLLTTRMPVFGEY-ATTGVGQT---------LHEASKTAVRN  269
            K  M    + +P +   P       P + EY +  G+               A + A   
Sbjct  178  KGGMAKYGIKNPIFLPGPVE-----PRYSEYLSFEGISVDESGKQHYLDATVAYRNACLR  232

Query  270  IIQWMVATKGLTHCEAYMIASVAG-DLQIIEAVNMPNYVV  308
             I+++    G T  +AY++ SVA  + +I   V++PN   
Sbjct  233  AIEYL-KKFGYTGEQAYLLLSVAPVEGRISGIVDIPNACA  271



Lambda      K        H        a         alpha
   0.318    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00010767

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. ...  154     1e-45


>CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family.  This family 
includes amidohydrolases of formamide EC:3.5.1.49 and 
acetamide. Methylophilus methylotrophus FmdA forms a homotrimer 
suggesting all the members of this family also do.
Length=271

 Score = 154 bits (391),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 83/280 (30%), Positives = 128/280 (46%), Gaps = 45/280 (16%)

Query  62   DIAATNPVFGPVYIQNAQPGDTLKVEVI---ALETADWGWTAT---IPGFGLLADEFSDP  115
            D+   + + GPV ++ A+PGD L V+++    L  A WG+T       G G L D F + 
Sbjct  4    DLTGVHYLSGPVAVEGAEPGDLLVVDILDIGPLPEAPWGYTGIFAKENGGGFLTDHFPEA  63

Query  116  SLHIWQINKERGYAVFKD--NIRIPLRPFLGCIGLAP---------ATDEDLSTVPPTNA  164
            +  IW    E  YA  +    +R    P  G IG AP         A + +L     T  
Sbjct  64   AKAIWDF--EGIYATSRHIPGVRFRGLPHPGLIGTAPSAELLDSWNAREGELIA---TEN  118

Query  165  GGNLDCRDLTVGATLYLPVQTDGALFSCGDGHAAQGHGEV--CGTAIETSIKATLRFELC  222
            GGN D ++L+ G+ +Y PV  +GA  S GD H +QG GE+  CG AIE +   TL+ ++ 
Sbjct  119  GGNCDIKNLSRGSRVYFPVFVEGAGLSVGDLHFSQGDGEITFCG-AIEMAGVVTLKVDVI  177

Query  223  KD-MPW--VTSPQYETPPSLLTTRMPVFGEY-ATTGVGQT---------LHEASKTAVRN  269
            K  M    + +P +   P       P + EY +  G+               A + A   
Sbjct  178  KGGMAKYGIKNPIFLPGPVE-----PRYSEYLSFEGISVDESGKQHYLDATVAYRNACLR  232

Query  270  IIQWMVATKGLTHCEAYMIASVAG-DLQIIEAVNMPNYVV  308
             I+++    G T  +AY++ SVA  + +I   V++PN   
Sbjct  233  AIEYL-KKFGYTGEQAYLLLSVAPVEGRISGIVDIPNACA  271



Lambda      K        H        a         alpha
   0.318    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00010768

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. ...  154     1e-45


>CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family.  This family 
includes amidohydrolases of formamide EC:3.5.1.49 and 
acetamide. Methylophilus methylotrophus FmdA forms a homotrimer 
suggesting all the members of this family also do.
Length=271

 Score = 154 bits (391),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 83/280 (30%), Positives = 128/280 (46%), Gaps = 45/280 (16%)

Query  62   DIAATNPVFGPVYIQNAQPGDTLKVEVI---ALETADWGWTAT---IPGFGLLADEFSDP  115
            D+   + + GPV ++ A+PGD L V+++    L  A WG+T       G G L D F + 
Sbjct  4    DLTGVHYLSGPVAVEGAEPGDLLVVDILDIGPLPEAPWGYTGIFAKENGGGFLTDHFPEA  63

Query  116  SLHIWQINKERGYAVFKD--NIRIPLRPFLGCIGLAP---------ATDEDLSTVPPTNA  164
            +  IW    E  YA  +    +R    P  G IG AP         A + +L     T  
Sbjct  64   AKAIWDF--EGIYATSRHIPGVRFRGLPHPGLIGTAPSAELLDSWNAREGELIA---TEN  118

Query  165  GGNLDCRDLTVGATLYLPVQTDGALFSCGDGHAAQGHGEV--CGTAIETSIKATLRFELC  222
            GGN D ++L+ G+ +Y PV  +GA  S GD H +QG GE+  CG AIE +   TL+ ++ 
Sbjct  119  GGNCDIKNLSRGSRVYFPVFVEGAGLSVGDLHFSQGDGEITFCG-AIEMAGVVTLKVDVI  177

Query  223  KD-MPW--VTSPQYETPPSLLTTRMPVFGEY-ATTGVGQT---------LHEASKTAVRN  269
            K  M    + +P +   P       P + EY +  G+               A + A   
Sbjct  178  KGGMAKYGIKNPIFLPGPVE-----PRYSEYLSFEGISVDESGKQHYLDATVAYRNACLR  232

Query  270  IIQWMVATKGLTHCEAYMIASVAG-DLQIIEAVNMPNYVV  308
             I+++    G T  +AY++ SVA  + +I   V++PN   
Sbjct  233  AIEYL-KKFGYTGEQAYLLLSVAPVEGRISGIVDIPNACA  271



Lambda      K        H        a         alpha
   0.318    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00010770

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. ...  154     1e-45


>CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family.  This family 
includes amidohydrolases of formamide EC:3.5.1.49 and 
acetamide. Methylophilus methylotrophus FmdA forms a homotrimer 
suggesting all the members of this family also do.
Length=271

 Score = 154 bits (391),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 83/280 (30%), Positives = 128/280 (46%), Gaps = 45/280 (16%)

Query  62   DIAATNPVFGPVYIQNAQPGDTLKVEVI---ALETADWGWTAT---IPGFGLLADEFSDP  115
            D+   + + GPV ++ A+PGD L V+++    L  A WG+T       G G L D F + 
Sbjct  4    DLTGVHYLSGPVAVEGAEPGDLLVVDILDIGPLPEAPWGYTGIFAKENGGGFLTDHFPEA  63

Query  116  SLHIWQINKERGYAVFKD--NIRIPLRPFLGCIGLAP---------ATDEDLSTVPPTNA  164
            +  IW    E  YA  +    +R    P  G IG AP         A + +L     T  
Sbjct  64   AKAIWDF--EGIYATSRHIPGVRFRGLPHPGLIGTAPSAELLDSWNAREGELIA---TEN  118

Query  165  GGNLDCRDLTVGATLYLPVQTDGALFSCGDGHAAQGHGEV--CGTAIETSIKATLRFELC  222
            GGN D ++L+ G+ +Y PV  +GA  S GD H +QG GE+  CG AIE +   TL+ ++ 
Sbjct  119  GGNCDIKNLSRGSRVYFPVFVEGAGLSVGDLHFSQGDGEITFCG-AIEMAGVVTLKVDVI  177

Query  223  KD-MPW--VTSPQYETPPSLLTTRMPVFGEY-ATTGVGQT---------LHEASKTAVRN  269
            K  M    + +P +   P       P + EY +  G+               A + A   
Sbjct  178  KGGMAKYGIKNPIFLPGPVE-----PRYSEYLSFEGISVDESGKQHYLDATVAYRNACLR  232

Query  270  IIQWMVATKGLTHCEAYMIASVAG-DLQIIEAVNMPNYVV  308
             I+++    G T  +AY++ SVA  + +I   V++PN   
Sbjct  233  AIEYL-KKFGYTGEQAYLLLSVAPVEGRISGIVDIPNACA  271



Lambda      K        H        a         alpha
   0.318    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00017333

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. ...  153     2e-45


>CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family.  This family 
includes amidohydrolases of formamide EC:3.5.1.49 and 
acetamide. Methylophilus methylotrophus FmdA forms a homotrimer 
suggesting all the members of this family also do.
Length=271

 Score = 153 bits (390),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 83/280 (30%), Positives = 128/280 (46%), Gaps = 45/280 (16%)

Query  62   DIAATNPVFGPVYIQNAQPGDTLKVEVI---ALETADWGWTAT---IPGFGLLADEFSDP  115
            D+   + + GPV ++ A+PGD L V+++    L  A WG+T       G G L D F + 
Sbjct  4    DLTGVHYLSGPVAVEGAEPGDLLVVDILDIGPLPEAPWGYTGIFAKENGGGFLTDHFPEA  63

Query  116  SLHIWQINKERGYAVFKD--NIRIPLRPFLGCIGLAP---------ATDEDLSTVPPTNA  164
            +  IW    E  YA  +    +R    P  G IG AP         A + +L     T  
Sbjct  64   AKAIWDF--EGIYATSRHIPGVRFRGLPHPGLIGTAPSAELLDSWNAREGELIA---TEN  118

Query  165  GGNLDCRDLTVGATLYLPVQTDGALFSCGDGHAAQGHGEV--CGTAIETSIKATLRFELC  222
            GGN D ++L+ G+ +Y PV  +GA  S GD H +QG GE+  CG AIE +   TL+ ++ 
Sbjct  119  GGNCDIKNLSRGSRVYFPVFVEGAGLSVGDLHFSQGDGEITFCG-AIEMAGVVTLKVDVI  177

Query  223  KD-MPW--VTSPQYETPPSLLTTRMPVFGEY-ATTGVGQT---------LHEASKTAVRN  269
            K  M    + +P +   P       P + EY +  G+               A + A   
Sbjct  178  KGGMAKYGIKNPIFLPGPVE-----PRYSEYLSFEGISVDESGKQHYLDATVAYRNACLR  232

Query  270  IIQWMVATKGLTHCEAYMIASVAG-DLQIIEAVNMPNYVV  308
             I+++    G T  +AY++ SVA  + +I   V++PN   
Sbjct  233  AIEYL-KKFGYTGEQAYLLLSVAPVEGRISGIVDIPNACA  271



Lambda      K        H        a         alpha
   0.319    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00017334

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. ...  154     1e-45


>CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family.  This family 
includes amidohydrolases of formamide EC:3.5.1.49 and 
acetamide. Methylophilus methylotrophus FmdA forms a homotrimer 
suggesting all the members of this family also do.
Length=271

 Score = 154 bits (391),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 83/280 (30%), Positives = 128/280 (46%), Gaps = 45/280 (16%)

Query  62   DIAATNPVFGPVYIQNAQPGDTLKVEVI---ALETADWGWTAT---IPGFGLLADEFSDP  115
            D+   + + GPV ++ A+PGD L V+++    L  A WG+T       G G L D F + 
Sbjct  4    DLTGVHYLSGPVAVEGAEPGDLLVVDILDIGPLPEAPWGYTGIFAKENGGGFLTDHFPEA  63

Query  116  SLHIWQINKERGYAVFKD--NIRIPLRPFLGCIGLAP---------ATDEDLSTVPPTNA  164
            +  IW    E  YA  +    +R    P  G IG AP         A + +L     T  
Sbjct  64   AKAIWDF--EGIYATSRHIPGVRFRGLPHPGLIGTAPSAELLDSWNAREGELIA---TEN  118

Query  165  GGNLDCRDLTVGATLYLPVQTDGALFSCGDGHAAQGHGEV--CGTAIETSIKATLRFELC  222
            GGN D ++L+ G+ +Y PV  +GA  S GD H +QG GE+  CG AIE +   TL+ ++ 
Sbjct  119  GGNCDIKNLSRGSRVYFPVFVEGAGLSVGDLHFSQGDGEITFCG-AIEMAGVVTLKVDVI  177

Query  223  KD-MPW--VTSPQYETPPSLLTTRMPVFGEY-ATTGVGQT---------LHEASKTAVRN  269
            K  M    + +P +   P       P + EY +  G+               A + A   
Sbjct  178  KGGMAKYGIKNPIFLPGPVE-----PRYSEYLSFEGISVDESGKQHYLDATVAYRNACLR  232

Query  270  IIQWMVATKGLTHCEAYMIASVAG-DLQIIEAVNMPNYVV  308
             I+++    G T  +AY++ SVA  + +I   V++PN   
Sbjct  233  AIEYL-KKFGYTGEQAYLLLSVAPVEGRISGIVDIPNACA  271



Lambda      K        H        a         alpha
   0.318    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00017335

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. ...  154     1e-45


>CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family.  This family 
includes amidohydrolases of formamide EC:3.5.1.49 and 
acetamide. Methylophilus methylotrophus FmdA forms a homotrimer 
suggesting all the members of this family also do.
Length=271

 Score = 154 bits (391),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 83/280 (30%), Positives = 128/280 (46%), Gaps = 45/280 (16%)

Query  62   DIAATNPVFGPVYIQNAQPGDTLKVEVI---ALETADWGWTAT---IPGFGLLADEFSDP  115
            D+   + + GPV ++ A+PGD L V+++    L  A WG+T       G G L D F + 
Sbjct  4    DLTGVHYLSGPVAVEGAEPGDLLVVDILDIGPLPEAPWGYTGIFAKENGGGFLTDHFPEA  63

Query  116  SLHIWQINKERGYAVFKD--NIRIPLRPFLGCIGLAP---------ATDEDLSTVPPTNA  164
            +  IW    E  YA  +    +R    P  G IG AP         A + +L     T  
Sbjct  64   AKAIWDF--EGIYATSRHIPGVRFRGLPHPGLIGTAPSAELLDSWNAREGELIA---TEN  118

Query  165  GGNLDCRDLTVGATLYLPVQTDGALFSCGDGHAAQGHGEV--CGTAIETSIKATLRFELC  222
            GGN D ++L+ G+ +Y PV  +GA  S GD H +QG GE+  CG AIE +   TL+ ++ 
Sbjct  119  GGNCDIKNLSRGSRVYFPVFVEGAGLSVGDLHFSQGDGEITFCG-AIEMAGVVTLKVDVI  177

Query  223  KD-MPW--VTSPQYETPPSLLTTRMPVFGEY-ATTGVGQT---------LHEASKTAVRN  269
            K  M    + +P +   P       P + EY +  G+               A + A   
Sbjct  178  KGGMAKYGIKNPIFLPGPVE-----PRYSEYLSFEGISVDESGKQHYLDATVAYRNACLR  232

Query  270  IIQWMVATKGLTHCEAYMIASVAG-DLQIIEAVNMPNYVV  308
             I+++    G T  +AY++ SVA  + +I   V++PN   
Sbjct  233  AIEYL-KKFGYTGEQAYLLLSVAPVEGRISGIVDIPNACA  271



Lambda      K        H        a         alpha
   0.318    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00010771

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. ...  154     1e-45


>CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family.  This family 
includes amidohydrolases of formamide EC:3.5.1.49 and 
acetamide. Methylophilus methylotrophus FmdA forms a homotrimer 
suggesting all the members of this family also do.
Length=271

 Score = 154 bits (391),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 83/280 (30%), Positives = 128/280 (46%), Gaps = 45/280 (16%)

Query  62   DIAATNPVFGPVYIQNAQPGDTLKVEVI---ALETADWGWTAT---IPGFGLLADEFSDP  115
            D+   + + GPV ++ A+PGD L V+++    L  A WG+T       G G L D F + 
Sbjct  4    DLTGVHYLSGPVAVEGAEPGDLLVVDILDIGPLPEAPWGYTGIFAKENGGGFLTDHFPEA  63

Query  116  SLHIWQINKERGYAVFKD--NIRIPLRPFLGCIGLAP---------ATDEDLSTVPPTNA  164
            +  IW    E  YA  +    +R    P  G IG AP         A + +L     T  
Sbjct  64   AKAIWDF--EGIYATSRHIPGVRFRGLPHPGLIGTAPSAELLDSWNAREGELIA---TEN  118

Query  165  GGNLDCRDLTVGATLYLPVQTDGALFSCGDGHAAQGHGEV--CGTAIETSIKATLRFELC  222
            GGN D ++L+ G+ +Y PV  +GA  S GD H +QG GE+  CG AIE +   TL+ ++ 
Sbjct  119  GGNCDIKNLSRGSRVYFPVFVEGAGLSVGDLHFSQGDGEITFCG-AIEMAGVVTLKVDVI  177

Query  223  KD-MPW--VTSPQYETPPSLLTTRMPVFGEY-ATTGVGQT---------LHEASKTAVRN  269
            K  M    + +P +   P       P + EY +  G+               A + A   
Sbjct  178  KGGMAKYGIKNPIFLPGPVE-----PRYSEYLSFEGISVDESGKQHYLDATVAYRNACLR  232

Query  270  IIQWMVATKGLTHCEAYMIASVAG-DLQIIEAVNMPNYVV  308
             I+++    G T  +AY++ SVA  + +I   V++PN   
Sbjct  233  AIEYL-KKFGYTGEQAYLLLSVAPVEGRISGIVDIPNACA  271



Lambda      K        H        a         alpha
   0.318    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00010772

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. ...  154     1e-45


>CDD:397271 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family.  This family 
includes amidohydrolases of formamide EC:3.5.1.49 and 
acetamide. Methylophilus methylotrophus FmdA forms a homotrimer 
suggesting all the members of this family also do.
Length=271

 Score = 154 bits (391),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 83/280 (30%), Positives = 128/280 (46%), Gaps = 45/280 (16%)

Query  62   DIAATNPVFGPVYIQNAQPGDTLKVEVI---ALETADWGWTAT---IPGFGLLADEFSDP  115
            D+   + + GPV ++ A+PGD L V+++    L  A WG+T       G G L D F + 
Sbjct  4    DLTGVHYLSGPVAVEGAEPGDLLVVDILDIGPLPEAPWGYTGIFAKENGGGFLTDHFPEA  63

Query  116  SLHIWQINKERGYAVFKD--NIRIPLRPFLGCIGLAP---------ATDEDLSTVPPTNA  164
            +  IW    E  YA  +    +R    P  G IG AP         A + +L     T  
Sbjct  64   AKAIWDF--EGIYATSRHIPGVRFRGLPHPGLIGTAPSAELLDSWNAREGELIA---TEN  118

Query  165  GGNLDCRDLTVGATLYLPVQTDGALFSCGDGHAAQGHGEV--CGTAIETSIKATLRFELC  222
            GGN D ++L+ G+ +Y PV  +GA  S GD H +QG GE+  CG AIE +   TL+ ++ 
Sbjct  119  GGNCDIKNLSRGSRVYFPVFVEGAGLSVGDLHFSQGDGEITFCG-AIEMAGVVTLKVDVI  177

Query  223  KD-MPW--VTSPQYETPPSLLTTRMPVFGEY-ATTGVGQT---------LHEASKTAVRN  269
            K  M    + +P +   P       P + EY +  G+               A + A   
Sbjct  178  KGGMAKYGIKNPIFLPGPVE-----PRYSEYLSFEGISVDESGKQHYLDATVAYRNACLR  232

Query  270  IIQWMVATKGLTHCEAYMIASVAG-DLQIIEAVNMPNYVV  308
             I+++    G T  +AY++ SVA  + +I   V++PN   
Sbjct  233  AIEYL-KKFGYTGEQAYLLLSVAPVEGRISGIVDIPNACA  271



Lambda      K        H        a         alpha
   0.318    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00017336

Length=772
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433145 pfam13361, UvrD_C, UvrD-like helicase C-terminal domai...  225     3e-67
CDD:463913 pfam13538, UvrD_C_2, UvrD-like helicase C-terminal dom...  67.6    7e-15


>CDD:433145 pfam13361, UvrD_C, UvrD-like helicase C-terminal domain.  This 
domain is found at the C-terminus of a wide variety of helicase 
enzymes. This domain has a AAA-like structural fold.
Length=377

 Score = 225 bits (576),  Expect = 3e-67, Method: Composition-based stats.
 Identities = 118/402 (29%), Positives = 175/402 (44%), Gaps = 63/402 (16%)

Query  45   ILLEDNYRSSGSILRSAQDVIEQDSSR----PSRKLQPTHCPGTMPVLRKLPTAEAEAQW  100
            I LE NYRS+ ++L++A + I  +  R    P + L  T   G    + +  T E EA+W
Sbjct  1    IHLEINYRSTKNLLKAANEFINNNFGRATIYPKKILAETVEDGEKIKIIEAETEEEEAEW  60

Query  101  IVLEIKRSMAMTGKLLNYSDFAILLRSAALSRHIESEMGKQGVPYRMVGGLRFFDRVEIK  160
            I LEIK+ +A   K   Y+D A+L RS + +  IE  + K G+PY +VG  +FF R EIK
Sbjct  61   IALEIKKLVARDEK---YNDIAVLTRSNSDADLIEEALKKLGIPYFVVGQTKFFRREEIK  117

Query  161  VLLDYLRVISNPGNSDALLRIINVPSRKIGEESVKTLMNGADTAKIPLWNFIKDVAQGRR  220
             +L YLR+I+N  +S +L RI+N P R IG  +++ +        + L +FI        
Sbjct  118  DILAYLRLIANKHDSISLKRILNGPKRGIGNATLERIREYKKRG-LRLSDFINPDTLTYG  176

Query  221  STDKSLSKLTDQGLCTLVG-----------IIESSRQKLLECTDGSAPRKLLEFV--IKK  267
              D  +  L    +                II+ +  KL +   G        F+   K 
Sbjct  177  --DPFVIALEQDNIVVFDVETTGLDTTEDEIIQIAAIKLNK--KGVVIESFERFLRLKKP  232

Query  268  LNFREY--------LTTTYCQNEE------NRWANVEELLAQAGDVAAPAAEKGQDDSLP  313
            +             L        E       +  N+ EL +   +               
Sbjct  233  VGDSLQVHGFSDEFLQENGETPAEALRDFLEKLENLRELYSILREYDDIEETPEP-----  287

Query  314  EIQGLAQQQAHQGEEALSQFLANVALSTEVLSEDGDQPQEKVTISTIHAAKGLEWPVVFV  373
                         E+AL  FL    LS      +G   +E++ I TIH AKGLE+  VF+
Sbjct  288  -------------EDALRNFLEIATLSNS--ELEGSDIKERIPIMTIHQAKGLEFDTVFL  332

Query  374  PAVYNGIIPHSRAEDS----DEERRLLYVAMTRAQALLYLSY  411
              +  GI P  R+       +EERRL YVA+TRA+  LY+SY
Sbjct  333  AGLEEGIFPSYRSIKDEGNLEEERRLFYVAITRAKKRLYISY  374


>CDD:463913 pfam13538, UvrD_C_2, UvrD-like helicase C-terminal domain.  This 
domain is found at the C-terminus of a wide variety of helicase 
enzymes. This domain has a AAA-like structural fold.
Length=52

 Score = 67.6 bits (166),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query  355  VTISTIHAAKGLEWPVVFVPAVYNGIIPHSRAEDSDEERRLLYVAMTRAQALLYL  409
                T+H A+G E+P VF+          +    S   RRLLY A+TRA+  L L
Sbjct  2    AYALTVHKAQGSEFPAVFLVDPD-----LTAHYHSMLRRRLLYTAVTRARKKLVL  51



Lambda      K        H        a         alpha
   0.314    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 986593056


Query= TCONS_00010773

Length=1001
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395462 pfam00580, UvrD-helicase, UvrD/REP helicase N-terminal...  256     6e-79
CDD:433145 pfam13361, UvrD_C, UvrD-like helicase C-terminal domai...  225     4e-66
CDD:463913 pfam13538, UvrD_C_2, UvrD-like helicase C-terminal dom...  67.6    9e-15
CDD:433059 pfam13245, AAA_19, AAA domain                              60.3    3e-11


>CDD:395462 pfam00580, UvrD-helicase, UvrD/REP helicase N-terminal domain. 
 The Rep family helicases are composed of four structural 
domains. The Rep family function as dimers. REP helicases catalyze 
ATP dependent unwinding of double stranded DNA to single 
stranded DNA. Some members have large insertions near to 
the carboxy-terminus relative to other members of the family.
Length=267

 Score = 256 bits (657),  Expect = 6e-79, Method: Composition-based stats.
 Identities = 109/271 (40%), Positives = 154/271 (57%), Gaps = 13/271 (5%)

Query  8    LNSAQKAAVTSPASVLQVLAPPGSGKTKTLTARVAYLLSHYGYQPQDVICCTFTIKASRE  67
            LN  Q+ AVT     L VLA  GSGKT+ LT R+AYL+   G  P++++  TFT KA+RE
Sbjct  1    LNPEQRKAVTHLGGPLLVLAGAGSGKTRVLTERIAYLILEGGIDPEEILAVTFTNKAARE  60

Query  68   MRERLASLVGNEVQSRLILGTFHSICRRYLVSYGYLIGLRKGFGIADSSDSLAIIKRIVK  127
            M+ER+  L+G    S L + TFHS C R L  Y   IGL   F I D  D LA++K +++
Sbjct  61   MKERILKLLGKAELSELNISTFHSFCLRILRKYANRIGLLPNFSILDELDQLALLKELLE  120

Query  128  RLRCSI-----QPNTARARISHQKAHGVSPDEAAVKYSTGSKSAEHHEFVQIYREYESYL  182
            + R ++     +    +  IS  K   +SP+E       G+         + Y+EY+  L
Sbjct  121  KDRLNLDPKLLRKLELKELISKAKNRLLSPEELQ----QGAADPRDKLAAEFYQEYQERL  176

Query  183  ATSNLLDYDDLLLRCADLLRRHP----QCVSNVQAVLVDEFQDTNHIQYELMNLFAVRNR  238
              +N LD+DDLLL   +LLR  P          + +LVDEFQDTN IQY L+ L A  + 
Sbjct  177  KENNALDFDDLLLLTLELLRSDPELLEAYRERFKYILVDEFQDTNPIQYRLLKLLAGGHE  236

Query  239  RITVVGDPDQSIYGFRSAEIKNLGRMQQHYK  269
             + +VGDPDQSIYGFR A+I+N+ + ++ + 
Sbjct  237  NLFLVGDPDQSIYGFRGADIENILKFEKDFP  267


>CDD:433145 pfam13361, UvrD_C, UvrD-like helicase C-terminal domain.  This 
domain is found at the C-terminus of a wide variety of helicase 
enzymes. This domain has a AAA-like structural fold.
Length=377

 Score = 225 bits (576),  Expect = 4e-66, Method: Composition-based stats.
 Identities = 118/402 (29%), Positives = 175/402 (44%), Gaps = 63/402 (16%)

Query  274  ILLEDNYRSSGSILRSAQDVIEQDSSR----PSRKLQPTHCPGTMPVLRKLPTAEAEAQW  329
            I LE NYRS+ ++L++A + I  +  R    P + L  T   G    + +  T E EA+W
Sbjct  1    IHLEINYRSTKNLLKAANEFINNNFGRATIYPKKILAETVEDGEKIKIIEAETEEEEAEW  60

Query  330  IVLEIKRSMAMTGKLLNYSDFAILLRSAALSRHIESEMGKQGVPYRMVGGLRFFDRVEIK  389
            I LEIK+ +A   K   Y+D A+L RS + +  IE  + K G+PY +VG  +FF R EIK
Sbjct  61   IALEIKKLVARDEK---YNDIAVLTRSNSDADLIEEALKKLGIPYFVVGQTKFFRREEIK  117

Query  390  VLLDYLRVISNPGNSDALLRIINVPSRKIGEESVKTLMNGADTAKIPLWNFIKDVAQGRR  449
             +L YLR+I+N  +S +L RI+N P R IG  +++ +        + L +FI        
Sbjct  118  DILAYLRLIANKHDSISLKRILNGPKRGIGNATLERIREYKKRG-LRLSDFINPDTLTYG  176

Query  450  STDKSLSKLTDQGLCTLVG-----------IIESSRQKLLECTDGSAPRKLLEFV--IKK  496
              D  +  L    +                II+ +  KL +   G        F+   K 
Sbjct  177  --DPFVIALEQDNIVVFDVETTGLDTTEDEIIQIAAIKLNK--KGVVIESFERFLRLKKP  232

Query  497  LNFREY--------LTTTYCQNEE------NRWANVEELLAQAGDVAAPAAEKGQDDSLP  542
            +             L        E       +  N+ EL +   +               
Sbjct  233  VGDSLQVHGFSDEFLQENGETPAEALRDFLEKLENLRELYSILREYDDIEETPEP-----  287

Query  543  EIQGLAQQQAHQGEEALSQFLANVALSTEVLSEDGDQPQEKVTISTIHAAKGLEWPVVFV  602
                         E+AL  FL    LS      +G   +E++ I TIH AKGLE+  VF+
Sbjct  288  -------------EDALRNFLEIATLSNS--ELEGSDIKERIPIMTIHQAKGLEFDTVFL  332

Query  603  PAVYNGIIPHSRAEDS----DEERRLLYVAMTRAQALLYLSY  640
              +  GI P  R+       +EERRL YVA+TRA+  LY+SY
Sbjct  333  AGLEEGIFPSYRSIKDEGNLEEERRLFYVAITRAKKRLYISY  374


>CDD:463913 pfam13538, UvrD_C_2, UvrD-like helicase C-terminal domain.  This 
domain is found at the C-terminus of a wide variety of helicase 
enzymes. This domain has a AAA-like structural fold.
Length=52

 Score = 67.6 bits (166),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query  584  VTISTIHAAKGLEWPVVFVPAVYNGIIPHSRAEDSDEERRLLYVAMTRAQALLYL  638
                T+H A+G E+P VF+          +    S   RRLLY A+TRA+  L L
Sbjct  2    AYALTVHKAQGSEFPAVFLVDPD-----LTAHYHSMLRRRLLYTAVTRARKKLVL  51


>CDD:433059 pfam13245, AAA_19, AAA domain.  
Length=136

 Score = 60.3 bits (147),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (5%)

Query  12  QKAAV--TSPASVLQVLAPPGSGKTKTLTARVAYLLSHYGYQPQDVICCTFTIKASREMR  69
           Q+ AV    P+ V+ +   PG+GKT T+   VA L++  G     ++    T +A++ + 
Sbjct  1   QREAVRTALPSKVVLLTGGPGTGKTTTIRHIVALLVA-LGGVSFPILLAAPTGRAAKRLS  59

Query  70  ERL  72
           ER 
Sbjct  60  ERT  62



Lambda      K        H        a         alpha
   0.315    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1281367780


Query= TCONS_00010774

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00010775

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain. Cyclin...  123     1e-35
CDD:397230 pfam02984, Cyclin_C, Cyclin, C-terminal domain. Cyclin...  69.6    2e-15


>CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain.  Cyclins regulate 
cyclin dependent kinases (CDKs). Cyclin-0 (CCNO) is a Uracil-DNA 
glycosylase that is related to other cyclins. Cyclins 
contain two domains of similar all-alpha fold, of which 
this family corresponds with the N-terminal domain.
Length=127

 Score = 123 bits (311),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 42/97 (43%), Positives = 62/97 (64%), Gaps = 2/97 (2%)

Query  1    MRPYLLDFLIEAHTAFQLLPATLFLTVNLLDRYCSKRVVYKRHYQLVGCAALLIAAKYGD  60
            MR  L+D+L+E H  F+LLP TL+L VN LDR+ SK+ V K   QLVG   L IAAKY  
Sbjct  30   MRAILIDWLVEVHEKFKLLPETLYLAVNYLDRFLSKKSVPKNKLQLVGVTCLFIAAKY--  87

Query  61   KKDRVPTIKELKSMCCSLYDDDMFIQMEWHVLQTLGW  97
            ++   PT+++L  +  + Y  +  ++ME  +L+TL +
Sbjct  88   EEIYPPTVEDLVYITDNAYTREEILRMERLILETLNF  124


>CDD:397230 pfam02984, Cyclin_C, Cyclin, C-terminal domain.  Cyclins regulate 
cyclin dependent kinases (CDKs). Human CCNO is a Uracil-DNA 
glycosylase that is related to other cyclins. Cyclins contain 
two domains of similar all-alpha fold, of which this 
family corresponds with the C-terminal domain.
Length=119

 Score = 69.6 bits (171),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 54/116 (47%), Gaps = 13/116 (11%)

Query  102  PTVDSFLQ--IAVLDTPHDPEVEHLALYILEISLFHREFVSKASADLARASLALARCILN  159
            PT  SFL+      D  HD E+  LA Y+LE++L   +F+    + +A A++ LAR  LN
Sbjct  1    PTPLSFLRRFSKAADYLHDLELRTLAKYLLELTLLDYDFLKYPPSLIAAAAVYLARKTLN  60

Query  160  RP--QPRHTEWASQYDSMTLVGLSQQLHQ--------PSQVLSRKYSSSHYSRVAK  205
             P        + + Y    L    + L +          Q + RKYSSS + +V+ 
Sbjct  61   SPEWTETLEHY-TGYSEEDLKPCVKLLLELLLNAPSSKLQAVRRKYSSSKFMKVST  115



Lambda      K        H        a         alpha
   0.318    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00010776

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.144    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00017340

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00017339

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0692    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00017341

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00010777

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00017342

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00010778

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00010781

Length=976


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1245970880


Query= TCONS_00010780

Length=538


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 676787502


Query= TCONS_00010782

Length=976


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1245970880


Query= TCONS_00017343

Length=384


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00017344

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465300 pfam16891, STPPase_N, Serine-threonine protein phospha...  84.1    4e-21
CDD:459691 pfam00149, Metallophos, Calcineurin-like phosphoestera...  76.5    1e-17


>CDD:465300 pfam16891, STPPase_N, Serine-threonine protein phosphatase N-terminal 
domain.  This family is often found at the N-terminus 
of Metallophos family, in serine-threonine protein phosphatases.
Length=48

 Score = 84.1 bits (209),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query  183  LDDMISRLLDAGYSTKVTKTVCLKNAEIMAICSAARELFLSQPALLELS  231
            LDD+I RLL+        K V L  AEI A+C  ARE+FLSQP LLEL 
Sbjct  1    LDDIIERLLEVRGKPG-GKQVQLSEAEIRALCRKAREIFLSQPMLLELE  48


>CDD:459691 pfam00149, Metallophos, Calcineurin-like phosphoesterase.  This 
family includes a diverse range of phosphoesterases, including 
protein phosphoserine phosphatases, nucleotidases, sphingomyelin 
phosphodiesterases and 2'-3' cAMP phosphodiesterases 
as well as nucleases such as bacterial SbcD or yeast MRE11. 
The most conserved regions in this superfamily centre around 
the metal chelating residues.
Length=114

 Score = 76.5 bits (188),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 39/119 (33%), Positives = 55/119 (46%), Gaps = 20/119 (17%)

Query  233  PVKIVGDVH--GQYTDLIRLFEMCGFPPASNYLFL--GDYVDRGKQSLETILLLLCYKLK  288
             + ++GD+H  GQ  DL+ L +          L L  GD VDRG  S E + LL      
Sbjct  2    RILVIGDLHLPGQLDDLLELLKKLL-EEGKPDLVLHAGDLVDRGPPSEEVLELLERLIKY  60

Query  289  YPENFFLLRGNHECANVTRVYGFYDECKRRC-----NIKIWKTFIDTFNCLPIAATVAG  342
             P   +L+RGNH+          Y EC R         + WK F++ FN LP+A  ++G
Sbjct  61   VP--VYLVRGNHDFD--------YGECLRLYPYLGLLARPWKRFLEVFNFLPLAGILSG  109



Lambda      K        H        a         alpha
   0.318    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00010783

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00017346

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465300 pfam16891, STPPase_N, Serine-threonine protein phospha...  84.1    4e-21
CDD:459691 pfam00149, Metallophos, Calcineurin-like phosphoestera...  76.5    1e-17


>CDD:465300 pfam16891, STPPase_N, Serine-threonine protein phosphatase N-terminal 
domain.  This family is often found at the N-terminus 
of Metallophos family, in serine-threonine protein phosphatases.
Length=48

 Score = 84.1 bits (209),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query  183  LDDMISRLLDAGYSTKVTKTVCLKNAEIMAICSAARELFLSQPALLELS  231
            LDD+I RLL+        K V L  AEI A+C  ARE+FLSQP LLEL 
Sbjct  1    LDDIIERLLEVRGKPG-GKQVQLSEAEIRALCRKAREIFLSQPMLLELE  48


>CDD:459691 pfam00149, Metallophos, Calcineurin-like phosphoesterase.  This 
family includes a diverse range of phosphoesterases, including 
protein phosphoserine phosphatases, nucleotidases, sphingomyelin 
phosphodiesterases and 2'-3' cAMP phosphodiesterases 
as well as nucleases such as bacterial SbcD or yeast MRE11. 
The most conserved regions in this superfamily centre around 
the metal chelating residues.
Length=114

 Score = 76.5 bits (188),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 39/119 (33%), Positives = 55/119 (46%), Gaps = 20/119 (17%)

Query  233  PVKIVGDVH--GQYTDLIRLFEMCGFPPASNYLFL--GDYVDRGKQSLETILLLLCYKLK  288
             + ++GD+H  GQ  DL+ L +          L L  GD VDRG  S E + LL      
Sbjct  2    RILVIGDLHLPGQLDDLLELLKKLL-EEGKPDLVLHAGDLVDRGPPSEEVLELLERLIKY  60

Query  289  YPENFFLLRGNHECANVTRVYGFYDECKRRC-----NIKIWKTFIDTFNCLPIAATVAG  342
             P   +L+RGNH+          Y EC R         + WK F++ FN LP+A  ++G
Sbjct  61   VP--VYLVRGNHDFD--------YGECLRLYPYLGLLARPWKRFLEVFNFLPLAGILSG  109



Lambda      K        H        a         alpha
   0.318    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00010792

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00010785

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00010786

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00010787

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00017347

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00017348

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00017349

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00010790

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00010788

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00010789

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00017350

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00010791

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00017352

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.147    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00010793

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00017353

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00017355

Length=329
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:280116 pfam01875, Memo, Memo-like protein. This family contai...  146     2e-42


>CDD:280116 pfam01875, Memo, Memo-like protein.  This family contains members 
from all branches of life. The molecular function of this 
protein is unknown, but Memo (mediator of ErbB2-driven cell 
motility) a human protein is included in this family. It 
has been suggested that Memo controls cell migration by relaying 
extracellular chemotactic signals to the microtubule cytoskeleton.
Length=271

 Score = 146 bits (370),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 80/303 (26%), Positives = 116/303 (38%), Gaps = 82/303 (27%)

Query  24   PCAAYAYRALDL-SKAKRIFILGPSHHHYLSTLALPQLTSYYTPLSDEPLPLDTELIAKL  82
            P AA+AY AL+   + +R+ ILGP+H    S +++   + + TPL D  + +D EL+  L
Sbjct  49   PVAAHAYAALESTPEPERVVILGPNHTGLGSPVSVSPFSEWETPLGD--VKVDEELVEAL  106

Query  83   LSAKAVKPNGSTVSFTTMTRSVDEDEHSIELHLPYIHRLLQLQHPTKRTSQYPPLVPILV  142
                 V  +       T        EHS+E+ LP++  L               +VPILV
Sbjct  107  -----VAESPIDDPDETAHLY----EHSLEVQLPFLQYLFDENFK---------IVPILV  148

Query  143  GSTSASTEQAFGALLASYLEDPSNVFVISSDFCHWGLRFSYTYYVPQAPKPGPKLPLSAD  202
            G     T +  G  LA  ++DP N+ + SSDF H+G RF        A            
Sbjct  149  GMQDPETAKEVGEALAKVIKDPGNLVIASSDFSHYGRRFGLP--HEIAESI---------  197

Query  203  ALPQPSNDLDEFEERIELVSAGHSLQRRDRINSREPAIHESISAFDIATMAAIATGETEN  262
                                       RDRI                  + AI     E 
Sbjct  198  ---------------------------RDRI-----------------GIKAIEELNEEA  213

Query  263  FLDVIQRTGNTVCGRHPIGVIMAAIEATRTQEDGKKGAFHFIRYERSSDAVNVTDSSVSY  322
            F + +  T NT+CG  PI VI+ A++    ++         + Y  S D    TDS V Y
Sbjct  214  FYEYLSGTNNTICGYGPIAVILEALKKLGAKK------GKLLDYATSGDVTGDTDSVVGY  267

Query  323  VSA  325
              A
Sbjct  268  AGA  270



Lambda      K        H        a         alpha
   0.317    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 385413556


Query= TCONS_00017354

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:280116 pfam01875, Memo, Memo-like protein. This family contai...  111     3e-30


>CDD:280116 pfam01875, Memo, Memo-like protein.  This family contains members 
from all branches of life. The molecular function of this 
protein is unknown, but Memo (mediator of ErbB2-driven cell 
motility) a human protein is included in this family. It 
has been suggested that Memo controls cell migration by relaying 
extracellular chemotactic signals to the microtubule cytoskeleton.
Length=271

 Score = 111 bits (279),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 77/220 (35%), Gaps = 70/220 (32%)

Query  7    EDEHSIELHLPYIHRLLQLQHPTKRTSQYPPLVPILVGSTSASTEQAFGALLASYLEDPS  66
              EHS+E+ LP++  L               +VPILVG     T +  G  LA  ++DP 
Sbjct  121  LYEHSLEVQLPFLQYLFDENFK---------IVPILVGMQDPETAKEVGEALAKVIKDPG  171

Query  67   NVFVISSDFCHWGLRFSYTYYVPQAPKPGPKLPLSADALPQPSNDLDEFEERIELVSAGH  126
            N+ + SSDF H+G RF        A                                   
Sbjct  172  NLVIASSDFSHYGRRFGLP--HEIAESI--------------------------------  197

Query  127  SLQRRDRINSREPAIHESISAFDIATMAAIATGETENFLDVIQRTGNTVCGRHPIGVIMA  186
                RDRI                  + AI     E F + +  T NT+CG  PI VI+ 
Sbjct  198  ----RDRI-----------------GIKAIEELNEEAFYEYLSGTNNTICGYGPIAVILE  236

Query  187  AIEATRTQEDGKKGAFHFIRYERSSDAVNVTDSSVSYVSA  226
            A++    ++         + Y  S D    TDS V Y  A
Sbjct  237  ALKKLGAKK------GKLLDYATSGDVTGDTDSVVGYAGA  270



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00010794

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:280116 pfam01875, Memo, Memo-like protein. This family contai...  111     3e-30


>CDD:280116 pfam01875, Memo, Memo-like protein.  This family contains members 
from all branches of life. The molecular function of this 
protein is unknown, but Memo (mediator of ErbB2-driven cell 
motility) a human protein is included in this family. It 
has been suggested that Memo controls cell migration by relaying 
extracellular chemotactic signals to the microtubule cytoskeleton.
Length=271

 Score = 111 bits (279),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 77/220 (35%), Gaps = 70/220 (32%)

Query  7    EDEHSIELHLPYIHRLLQLQHPTKRTSQYPPLVPILVGSTSASTEQAFGALLASYLEDPS  66
              EHS+E+ LP++  L               +VPILVG     T +  G  LA  ++DP 
Sbjct  121  LYEHSLEVQLPFLQYLFDENFK---------IVPILVGMQDPETAKEVGEALAKVIKDPG  171

Query  67   NVFVISSDFCHWGLRFSYTYYVPQAPKPGPKLPLSADALPQPSNDLDEFEERIELVSAGH  126
            N+ + SSDF H+G RF        A                                   
Sbjct  172  NLVIASSDFSHYGRRFGLP--HEIAESI--------------------------------  197

Query  127  SLQRRDRINSREPAIHESISAFDIATMAAIATGETENFLDVIQRTGNTVCGRHPIGVIMA  186
                RDRI                  + AI     E F + +  T NT+CG  PI VI+ 
Sbjct  198  ----RDRI-----------------GIKAIEELNEEAFYEYLSGTNNTICGYGPIAVILE  236

Query  187  AIEATRTQEDGKKGAFHFIRYERSSDAVNVTDSSVSYVSA  226
            A++    ++         + Y  S D    TDS V Y  A
Sbjct  237  ALKKLGAKK------GKLLDYATSGDVTGDTDSVVGYAGA  270



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00010796

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:280116 pfam01875, Memo, Memo-like protein. This family contai...  111     3e-30


>CDD:280116 pfam01875, Memo, Memo-like protein.  This family contains members 
from all branches of life. The molecular function of this 
protein is unknown, but Memo (mediator of ErbB2-driven cell 
motility) a human protein is included in this family. It 
has been suggested that Memo controls cell migration by relaying 
extracellular chemotactic signals to the microtubule cytoskeleton.
Length=271

 Score = 111 bits (279),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 77/220 (35%), Gaps = 70/220 (32%)

Query  7    EDEHSIELHLPYIHRLLQLQHPTKRTSQYPPLVPILVGSTSASTEQAFGALLASYLEDPS  66
              EHS+E+ LP++  L               +VPILVG     T +  G  LA  ++DP 
Sbjct  121  LYEHSLEVQLPFLQYLFDENFK---------IVPILVGMQDPETAKEVGEALAKVIKDPG  171

Query  67   NVFVISSDFCHWGLRFSYTYYVPQAPKPGPKLPLSADALPQPSNDLDEFEERIELVSAGH  126
            N+ + SSDF H+G RF        A                                   
Sbjct  172  NLVIASSDFSHYGRRFGLP--HEIAESI--------------------------------  197

Query  127  SLQRRDRINSREPAIHESISAFDIATMAAIATGETENFLDVIQRTGNTVCGRHPIGVIMA  186
                RDRI                  + AI     E F + +  T NT+CG  PI VI+ 
Sbjct  198  ----RDRI-----------------GIKAIEELNEEAFYEYLSGTNNTICGYGPIAVILE  236

Query  187  AIEATRTQEDGKKGAFHFIRYERSSDAVNVTDSSVSYVSA  226
            A++    ++         + Y  S D    TDS V Y  A
Sbjct  237  ALKKLGAKK------GKLLDYATSGDVTGDTDSVVGYAGA  270



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00010795

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:280116 pfam01875, Memo, Memo-like protein. This family contai...  204     6e-64


>CDD:280116 pfam01875, Memo, Memo-like protein.  This family contains members 
from all branches of life. The molecular function of this 
protein is unknown, but Memo (mediator of ErbB2-driven cell 
motility) a human protein is included in this family. It 
has been suggested that Memo controls cell migration by relaying 
extracellular chemotactic signals to the microtubule cytoskeleton.
Length=271

 Score = 204 bits (520),  Expect = 6e-64, Method: Composition-based stats.
 Identities = 103/359 (29%), Positives = 148/359 (41%), Gaps = 90/359 (25%)

Query  41   EPSHAGSWYSDNRSTLTRQLDQWLAHVPNEIEGIGSLPVPGSRVIIAPHAGYAYSGPCAA  100
            EP+ AGS+Y ++   L  QL+ +L H         + P   +R II PHAGY+YSGP AA
Sbjct  1    EPAVAGSFYPEDPEELRAQLEWFLLH--------NTGPGDIARKIICPHAGYSYSGPVAA  52

Query  101  YAYRALDL-SKAKRIFILGPSHHHYLSTLALPQLTSYYTPLSDEPLPLDTELIAKLLSAK  159
            +AY AL+   + +R+ ILGP+H    S +++   + + TPL D  + +D EL+  L    
Sbjct  53   HAYAALESTPEPERVVILGPNHTGLGSPVSVSPFSEWETPLGD--VKVDEELVEAL----  106

Query  160  AVKPNGSTVSFTTMTRSVDEDEHSIELHLPYIHRLLQLQHPTKRTSQYPPLVPILVGSTS  219
             V  +       T        EHS+E+ LP++  L               +VPILVG   
Sbjct  107  -VAESPIDDPDETAHLY----EHSLEVQLPFLQYLFDENFK---------IVPILVGMQD  152

Query  220  ASTEQAFGALLASYLEDPSNVFVISSDFCHWGLRFSYTYYVPQAPKPGPKLPLSADALPQ  279
              T +  G  LA  ++DP N+ + SSDF H+G RF        A                
Sbjct  153  PETAKEVGEALAKVIKDPGNLVIASSDFSHYGRRFGLP--HEIAESI-------------  197

Query  280  PSNDLDEFEERIELVSAGHSLQRRDRINSREPAIHESISAFDIATMAAIATGETENFLDV  339
                                   RDRI                  + AI     E F + 
Sbjct  198  -----------------------RDRI-----------------GIKAIEELNEEAFYEY  217

Query  340  IQRTGNTVCGRHPIGVIMAAIEATRTQEDGKKGAFHFIRYERSSDAVNVTDSSVSYVSA  398
            +  T NT+CG  PI VI+ A++    ++         + Y  S D    TDS V Y  A
Sbjct  218  LSGTNNTICGYGPIAVILEALKKLGAKK------GKLLDYATSGDVTGDTDSVVGYAGA  270



Lambda      K        H        a         alpha
   0.316    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00017356

Length=366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:280116 pfam01875, Memo, Memo-like protein. This family contai...  203     5e-64


>CDD:280116 pfam01875, Memo, Memo-like protein.  This family contains members 
from all branches of life. The molecular function of this 
protein is unknown, but Memo (mediator of ErbB2-driven cell 
motility) a human protein is included in this family. It 
has been suggested that Memo controls cell migration by relaying 
extracellular chemotactic signals to the microtubule cytoskeleton.
Length=271

 Score = 203 bits (518),  Expect = 5e-64, Method: Composition-based stats.
 Identities = 103/359 (29%), Positives = 148/359 (41%), Gaps = 90/359 (25%)

Query  5    EPSHAGSWYSDNRSTLTRQLDQWLAHVPNEIEGIGSLPVPGSRVIIAPHAGYAYSGPCAA  64
            EP+ AGS+Y ++   L  QL+ +L H         + P   +R II PHAGY+YSGP AA
Sbjct  1    EPAVAGSFYPEDPEELRAQLEWFLLH--------NTGPGDIARKIICPHAGYSYSGPVAA  52

Query  65   YAYRALDL-SKAKRIFILGPSHHHYLSTLALPQLTSYYTPLSDEPLPLDTELIAKLLSAK  123
            +AY AL+   + +R+ ILGP+H    S +++   + + TPL D  + +D EL+  L    
Sbjct  53   HAYAALESTPEPERVVILGPNHTGLGSPVSVSPFSEWETPLGD--VKVDEELVEAL----  106

Query  124  AVKPNGSTVSFTTMTRSVDEDEHSIELHLPYIHRLLQLQHPTKRTSQYPPLVPILVGSTS  183
             V  +       T        EHS+E+ LP++  L               +VPILVG   
Sbjct  107  -VAESPIDDPDETAHLY----EHSLEVQLPFLQYLFDENFK---------IVPILVGMQD  152

Query  184  ASTEQAFGALLASYLEDPSNVFVISSDFCHWGLRFSYTYYVPQAPKPGPKLPLSADALPQ  243
              T +  G  LA  ++DP N+ + SSDF H+G RF        A                
Sbjct  153  PETAKEVGEALAKVIKDPGNLVIASSDFSHYGRRFGLP--HEIAESI-------------  197

Query  244  PSNDLDEFEERIELVSAGHSLQRRDRINSREPAIHESISAFDIATMAAIATGETENFLDV  303
                                   RDRI                  + AI     E F + 
Sbjct  198  -----------------------RDRI-----------------GIKAIEELNEEAFYEY  217

Query  304  IQRTGNTVCGRHPIGVIMAAIEATRTQEDGKKGAFHFIRYERSSDAVNVTDSSVSYVSA  362
            +  T NT+CG  PI VI+ A++    ++         + Y  S D    TDS V Y  A
Sbjct  218  LSGTNNTICGYGPIAVILEALKKLGAKK------GKLLDYATSGDVTGDTDSVVGYAGA  270



Lambda      K        H        a         alpha
   0.317    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00010797

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:280116 pfam01875, Memo, Memo-like protein. This family contai...  111     3e-30


>CDD:280116 pfam01875, Memo, Memo-like protein.  This family contains members 
from all branches of life. The molecular function of this 
protein is unknown, but Memo (mediator of ErbB2-driven cell 
motility) a human protein is included in this family. It 
has been suggested that Memo controls cell migration by relaying 
extracellular chemotactic signals to the microtubule cytoskeleton.
Length=271

 Score = 111 bits (279),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 77/220 (35%), Gaps = 70/220 (32%)

Query  7    EDEHSIELHLPYIHRLLQLQHPTKRTSQYPPLVPILVGSTSASTEQAFGALLASYLEDPS  66
              EHS+E+ LP++  L               +VPILVG     T +  G  LA  ++DP 
Sbjct  121  LYEHSLEVQLPFLQYLFDENFK---------IVPILVGMQDPETAKEVGEALAKVIKDPG  171

Query  67   NVFVISSDFCHWGLRFSYTYYVPQAPKPGPKLPLSADALPQPSNDLDEFEERIELVSAGH  126
            N+ + SSDF H+G RF        A                                   
Sbjct  172  NLVIASSDFSHYGRRFGLP--HEIAESI--------------------------------  197

Query  127  SLQRRDRINSREPAIHESISAFDIATMAAIATGETENFLDVIQRTGNTVCGRHPIGVIMA  186
                RDRI                  + AI     E F + +  T NT+CG  PI VI+ 
Sbjct  198  ----RDRI-----------------GIKAIEELNEEAFYEYLSGTNNTICGYGPIAVILE  236

Query  187  AIEATRTQEDGKKGAFHFIRYERSSDAVNVTDSSVSYVSA  226
            A++    ++         + Y  S D    TDS V Y  A
Sbjct  237  ALKKLGAKK------GKLLDYATSGDVTGDTDSVVGYAGA  270



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00017358

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 7...  510     0.0  


>CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 71.  Family 
of alpha-1,3-glucanases.
Length=372

 Score = 510 bits (1317),  Expect = 0.0, Method: Composition-based stats.
 Identities = 176/378 (47%), Positives = 218/378 (58%), Gaps = 37/378 (10%)

Query  1    MQRAKALGIDAFALNIGVDPYTDTQLNFAYESAARNDMKVFISFDFNWYNTGQATAVGQK  60
            +Q AKA GID FALNIG D +TDTQL  AY++AA    K+F SFD        A  V   
Sbjct  22   IQLAKAAGIDGFALNIGSDSWTDTQLADAYQAAAALGFKLFFSFDMAGPWPCDADDVISL  81

Query  61   IRQYASLPAQLKVDGKVFASSFAGDGL--DIPALNSAAGTEVFFAPNFHPG-----VGDF  113
            I QYAS PAQ K +GK F S+F GDG   D  ++ +A    +FF P++         G  
Sbjct  82   INQYASHPAQFKYNGKPFVSTFEGDGNAFDWASIKAAWTGGIFFVPDWSSLGPATAAGAG  141

Query  114  NAIQCALNWMAWPNNDNNKAPTPDHNVSVAEGDSKYIAALNG-KPYIAPVSGWFSTHFGG  172
              +    +W AWPN   N            + D+ Y++AL G KPY+ PVS WF TH G 
Sbjct  142  GVVDGLFSWNAWPNGGTNM---------STDTDAAYLSALKGGKPYMMPVSPWFFTHLGP  192

Query  173  EVPYSKNWVFPSDLLWYDRWQEILNLGPRFIEIVTWNDYGESHYIGPLSSPHTDDGASKW  232
                 KNWV+  D LWYDRW++IL L P F+EI+TWNDYGESHYIGPL   H  DG+S W
Sbjct  193  PGYN-KNWVWRGDDLWYDRWEQILELQPDFVEIITWNDYGESHYIGPLRGKHAPDGSSNW  251

Query  233  VMDMPHNGWLEMSKPFIAAYKAGEKSANNYITEDKLIYWYRPTPKDINCDSTDTTMQGNP  292
            V  MPH+GW ++   +IAAYK G   +   ITED+L+YWYRP PKD  C S DTT     
Sbjct  252  VNGMPHDGWRDLLPYYIAAYKNG---STPTITEDQLVYWYRPHPKDATCSSGDTT-----  303

Query  293  NNSSGNFFRGRPNGYESMTDEVFVVSLLKSPATVQVTSGSSS-KTFQAQAGASAFSAPM-  350
                     G P G E   D+VFVV+LL SPATV V+SG ++ +TF   AG +  S P  
Sbjct  304  ---------GNPAGQELAQDKVFVVALLTSPATVTVSSGGNTQQTFDVPAGVNHGSVPFN  354

Query  351  GVGKQQFSLLRNGQTVMS  368
            G G    S+ RNG+TV S
Sbjct  355  GTGAVSVSISRNGKTVAS  372



Lambda      K        H        a         alpha
   0.316    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00017357

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 7...  177     3e-55


>CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 71.  Family 
of alpha-1,3-glucanases.
Length=372

 Score = 177 bits (452),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 63/137 (46%), Positives = 79/137 (58%), Gaps = 19/137 (14%)

Query  1    MDMPHNGWLEMSKPFIAAYKAGEKSANNYITEDKLIYWYRPTPKDINCDSTDTTMQGNPN  60
              MPH+GW ++   +IAAYK G   +   ITED+L+YWYRP PKD  C S DTT      
Sbjct  253  NGMPHDGWRDLLPYYIAAYKNG---STPTITEDQLVYWYRPHPKDATCSSGDTT------  303

Query  61   NSSGNFFRGRPNGYESMTDEVFVVSLLKSPATVQVTSGSSS-KTFQAQAGASAFSAPM-G  118
                    G P G E   D+VFVV+LL SPATV V+SG ++ +TF   AG +  S P  G
Sbjct  304  --------GNPAGQELAQDKVFVVALLTSPATVTVSSGGNTQQTFDVPAGVNHGSVPFNG  355

Query  119  VGKQQFSLLRNGQTVMS  135
             G    S+ RNG+TV S
Sbjct  356  TGAVSVSISRNGKTVAS  372



Lambda      K        H        a         alpha
   0.313    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00017359

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00010798

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 7...  238     3e-78


>CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 71.  Family 
of alpha-1,3-glucanases.
Length=372

 Score = 238 bits (609),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 76/190 (40%), Positives = 101/190 (53%), Gaps = 18/190 (9%)

Query  43   VFCHFMIGITSNRQSAADYDDDMQRAKALGIDAFALNIGVDPYTDTQLNFAYESAARNDM  102
            VF HFM+G T    + +D++ D+Q AKA GID FALNIG D +TDTQL  AY++AA    
Sbjct  1    VFAHFMVGNT-PYYTVSDWETDIQLAKAAGIDGFALNIGSDSWTDTQLADAYQAAAALGF  59

Query  103  KVFISFDFNWYNTGQATAVGQKIRQYASLPAQLKVDGKVFASSFAGDGL--DIPALNSAA  160
            K+F SFD        A  V   I QYAS PAQ K +GK F S+F GDG   D  ++ +A 
Sbjct  60   KLFFSFDMAGPWPCDADDVISLINQYASHPAQFKYNGKPFVSTFEGDGNAFDWASIKAAW  119

Query  161  GTEVFFAPNFHPG-----VGDFNAIQCALNWMAWPNNDNNKAPTPDHNVSVAEGDSKYIA  215
               +FF P++         G    +    +W AWPN   N            + D+ Y++
Sbjct  120  TGGIFFVPDWSSLGPATAAGAGGVVDGLFSWNAWPNGGTNM---------STDTDAAYLS  170

Query  216  ALNG-KPYIA  224
            AL G KPY+ 
Sbjct  171  ALKGGKPYMM  180



Lambda      K        H        a         alpha
   0.318    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00010799

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 7...  177     3e-55


>CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 71.  Family 
of alpha-1,3-glucanases.
Length=372

 Score = 177 bits (452),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 63/137 (46%), Positives = 79/137 (58%), Gaps = 19/137 (14%)

Query  1    MDMPHNGWLEMSKPFIAAYKAGEKSANNYITEDKLIYWYRPTPKDINCDSTDTTMQGNPN  60
              MPH+GW ++   +IAAYK G   +   ITED+L+YWYRP PKD  C S DTT      
Sbjct  253  NGMPHDGWRDLLPYYIAAYKNG---STPTITEDQLVYWYRPHPKDATCSSGDTT------  303

Query  61   NSSGNFFRGRPNGYESMTDEVFVVSLLKSPATVQVTSGSSS-KTFQAQAGASAFSAPM-G  118
                    G P G E   D+VFVV+LL SPATV V+SG ++ +TF   AG +  S P  G
Sbjct  304  --------GNPAGQELAQDKVFVVALLTSPATVTVSSGGNTQQTFDVPAGVNHGSVPFNG  355

Query  119  VGKQQFSLLRNGQTVMS  135
             G    S+ RNG+TV S
Sbjct  356  TGAVSVSISRNGKTVAS  372



Lambda      K        H        a         alpha
   0.313    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00017360

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 7...  237     3e-78


>CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 71.  Family 
of alpha-1,3-glucanases.
Length=372

 Score = 237 bits (608),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 76/190 (40%), Positives = 101/190 (53%), Gaps = 18/190 (9%)

Query  42   VFCHFMIGITSNRQSAADYDDDMQRAKALGIDAFALNIGVDPYTDTQLNFAYESAARNDM  101
            VF HFM+G T    + +D++ D+Q AKA GID FALNIG D +TDTQL  AY++AA    
Sbjct  1    VFAHFMVGNT-PYYTVSDWETDIQLAKAAGIDGFALNIGSDSWTDTQLADAYQAAAALGF  59

Query  102  KVFISFDFNWYNTGQATAVGQKIRQYASLPAQLKVDGKVFASSFAGDGL--DIPALNSAA  159
            K+F SFD        A  V   I QYAS PAQ K +GK F S+F GDG   D  ++ +A 
Sbjct  60   KLFFSFDMAGPWPCDADDVISLINQYASHPAQFKYNGKPFVSTFEGDGNAFDWASIKAAW  119

Query  160  GTEVFFAPNFHPG-----VGDFNAIQCALNWMAWPNNDNNKAPTPDHNVSVAEGDSKYIA  214
               +FF P++         G    +    +W AWPN   N            + D+ Y++
Sbjct  120  TGGIFFVPDWSSLGPATAAGAGGVVDGLFSWNAWPNGGTNM---------STDTDAAYLS  170

Query  215  ALNG-KPYIA  223
            AL G KPY+ 
Sbjct  171  ALKGGKPYMM  180



Lambda      K        H        a         alpha
   0.318    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00017361

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 7...  177     3e-55


>CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 71.  Family 
of alpha-1,3-glucanases.
Length=372

 Score = 177 bits (452),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 63/137 (46%), Positives = 79/137 (58%), Gaps = 19/137 (14%)

Query  1    MDMPHNGWLEMSKPFIAAYKAGEKSANNYITEDKLIYWYRPTPKDINCDSTDTTMQGNPN  60
              MPH+GW ++   +IAAYK G   +   ITED+L+YWYRP PKD  C S DTT      
Sbjct  253  NGMPHDGWRDLLPYYIAAYKNG---STPTITEDQLVYWYRPHPKDATCSSGDTT------  303

Query  61   NSSGNFFRGRPNGYESMTDEVFVVSLLKSPATVQVTSGSSS-KTFQAQAGASAFSAPM-G  118
                    G P G E   D+VFVV+LL SPATV V+SG ++ +TF   AG +  S P  G
Sbjct  304  --------GNPAGQELAQDKVFVVALLTSPATVTVSSGGNTQQTFDVPAGVNHGSVPFNG  355

Query  119  VGKQQFSLLRNGQTVMS  135
             G    S+ RNG+TV S
Sbjct  356  TGAVSVSISRNGKTVAS  372



Lambda      K        H        a         alpha
   0.313    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00017362

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 7...  158     7e-48


>CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 71.  Family 
of alpha-1,3-glucanases.
Length=372

 Score = 158 bits (401),  Expect = 7e-48, Method: Composition-based stats.
 Identities = 58/127 (46%), Positives = 72/127 (57%), Gaps = 19/127 (15%)

Query  1    MSKPFIAAYKAGEKSANNYITEDKLIYWYRPTPKDINCDSTDTTMQGNPNNSSGNFFRGR  60
            +   +IAAYK G   +   ITED+L+YWYRP PKD  C S DTT              G 
Sbjct  263  LLPYYIAAYKNG---STPTITEDQLVYWYRPHPKDATCSSGDTT--------------GN  305

Query  61   PNGYESMTDEVFVVSLLKSPATVQVTSGSSS-KTFQAQAGASAFSAPM-GVGKQQFSLLR  118
            P G E   D+VFVV+LL SPATV V+SG ++ +TF   AG +  S P  G G    S+ R
Sbjct  306  PAGQELAQDKVFVVALLTSPATVTVSSGGNTQQTFDVPAGVNHGSVPFNGTGAVSVSISR  365

Query  119  NGQTVMS  125
            NG+TV S
Sbjct  366  NGKTVAS  372



Lambda      K        H        a         alpha
   0.313    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0662    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00017363

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 7...  177     3e-55


>CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 71.  Family 
of alpha-1,3-glucanases.
Length=372

 Score = 177 bits (452),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 63/137 (46%), Positives = 79/137 (58%), Gaps = 19/137 (14%)

Query  1    MDMPHNGWLEMSKPFIAAYKAGEKSANNYITEDKLIYWYRPTPKDINCDSTDTTMQGNPN  60
              MPH+GW ++   +IAAYK G   +   ITED+L+YWYRP PKD  C S DTT      
Sbjct  253  NGMPHDGWRDLLPYYIAAYKNG---STPTITEDQLVYWYRPHPKDATCSSGDTT------  303

Query  61   NSSGNFFRGRPNGYESMTDEVFVVSLLKSPATVQVTSGSSS-KTFQAQAGASAFSAPM-G  118
                    G P G E   D+VFVV+LL SPATV V+SG ++ +TF   AG +  S P  G
Sbjct  304  --------GNPAGQELAQDKVFVVALLTSPATVTVSSGGNTQQTFDVPAGVNHGSVPFNG  355

Query  119  VGKQQFSLLRNGQTVMS  135
             G    S+ RNG+TV S
Sbjct  356  TGAVSVSISRNGKTVAS  372



Lambda      K        H        a         alpha
   0.313    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00010801

Length=497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 7...  548     0.0  


>CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 71.  Family 
of alpha-1,3-glucanases.
Length=372

 Score = 548 bits (1415),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/400 (46%), Positives = 232/400 (58%), Gaps = 38/400 (10%)

Query  43   VFCHFMIGITSNRQSAADYDDDMQRAKALGIDAFALNIGVDPYTDTQLNFAYESAARNDM  102
            VF HFM+G T    + +D++ D+Q AKA GID FALNIG D +TDTQL  AY++AA    
Sbjct  1    VFAHFMVGNT-PYYTVSDWETDIQLAKAAGIDGFALNIGSDSWTDTQLADAYQAAAALGF  59

Query  103  KVFISFDFNWYNTGQATAVGQKIRQYASLPAQLKVDGKVFASSFAGDGL--DIPALNSAA  160
            K+F SFD        A  V   I QYAS PAQ K +GK F S+F GDG   D  ++ +A 
Sbjct  60   KLFFSFDMAGPWPCDADDVISLINQYASHPAQFKYNGKPFVSTFEGDGNAFDWASIKAAW  119

Query  161  GTEVFFAPNFHPG-----VGDFNAIQCALNWMAWPNNDNNKAPTPDHNVSVAEGDSKYIA  215
               +FF P++         G    +    +W AWPN   N            + D+ Y++
Sbjct  120  TGGIFFVPDWSSLGPATAAGAGGVVDGLFSWNAWPNGGTNM---------STDTDAAYLS  170

Query  216  ALNG-KPYIAPVSGWFSTHFGGEVPYSKNWVFPSDLLWYDRWQEILNLGPRFIEIVTWND  274
            AL G KPY+ PVS WF TH G      KNWV+  D LWYDRW++IL L P F+EI+TWND
Sbjct  171  ALKGGKPYMMPVSPWFFTHLGPPGYN-KNWVWRGDDLWYDRWEQILELQPDFVEIITWND  229

Query  275  YGESHYIGPLSSPHTDDGASKWVMDMPHNGWLEMSKPFIAAYKAGEKSANNYITEDKLIY  334
            YGESHYIGPL   H  DG+S WV  MPH+GW ++   +IAAYK G   +   ITED+L+Y
Sbjct  230  YGESHYIGPLRGKHAPDGSSNWVNGMPHDGWRDLLPYYIAAYKNG---STPTITEDQLVY  286

Query  335  WYRPTPKDINCDSTDTTMQGNPNNSSGNFFRGRPNGYESMTDEVFVVSLLKSPATVQVTS  394
            WYRP PKD  C S DTT              G P G E   D+VFVV+LL SPATV V+S
Sbjct  287  WYRPHPKDATCSSGDTT--------------GNPAGQELAQDKVFVVALLTSPATVTVSS  332

Query  395  GSSS-KTFQAQAGASAFSAPM-GVGKQQFSLLRNGQTVMS  432
            G ++ +TF   AG +  S P  G G    S+ RNG+TV S
Sbjct  333  GGNTQQTFDVPAGVNHGSVPFNGTGAVSVSISRNGKTVAS  372



Lambda      K        H        a         alpha
   0.317    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 614710796


Query= TCONS_00010803

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 7...  237     3e-78


>CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 71.  Family 
of alpha-1,3-glucanases.
Length=372

 Score = 237 bits (608),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 76/190 (40%), Positives = 101/190 (53%), Gaps = 18/190 (9%)

Query  42   VFCHFMIGITSNRQSAADYDDDMQRAKALGIDAFALNIGVDPYTDTQLNFAYESAARNDM  101
            VF HFM+G T    + +D++ D+Q AKA GID FALNIG D +TDTQL  AY++AA    
Sbjct  1    VFAHFMVGNT-PYYTVSDWETDIQLAKAAGIDGFALNIGSDSWTDTQLADAYQAAAALGF  59

Query  102  KVFISFDFNWYNTGQATAVGQKIRQYASLPAQLKVDGKVFASSFAGDGL--DIPALNSAA  159
            K+F SFD        A  V   I QYAS PAQ K +GK F S+F GDG   D  ++ +A 
Sbjct  60   KLFFSFDMAGPWPCDADDVISLINQYASHPAQFKYNGKPFVSTFEGDGNAFDWASIKAAW  119

Query  160  GTEVFFAPNFHPG-----VGDFNAIQCALNWMAWPNNDNNKAPTPDHNVSVAEGDSKYIA  214
               +FF P++         G    +    +W AWPN   N            + D+ Y++
Sbjct  120  TGGIFFVPDWSSLGPATAAGAGGVVDGLFSWNAWPNGGTNM---------STDTDAAYLS  170

Query  215  ALNG-KPYIA  223
            AL G KPY+ 
Sbjct  171  ALKGGKPYMM  180



Lambda      K        H        a         alpha
   0.318    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00017364

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 7...  548     0.0  


>CDD:461007 pfam03659, Glyco_hydro_71, Glycosyl hydrolase family 71.  Family 
of alpha-1,3-glucanases.
Length=372

 Score = 548 bits (1415),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/400 (46%), Positives = 232/400 (58%), Gaps = 38/400 (10%)

Query  42   VFCHFMIGITSNRQSAADYDDDMQRAKALGIDAFALNIGVDPYTDTQLNFAYESAARNDM  101
            VF HFM+G T    + +D++ D+Q AKA GID FALNIG D +TDTQL  AY++AA    
Sbjct  1    VFAHFMVGNT-PYYTVSDWETDIQLAKAAGIDGFALNIGSDSWTDTQLADAYQAAAALGF  59

Query  102  KVFISFDFNWYNTGQATAVGQKIRQYASLPAQLKVDGKVFASSFAGDGL--DIPALNSAA  159
            K+F SFD        A  V   I QYAS PAQ K +GK F S+F GDG   D  ++ +A 
Sbjct  60   KLFFSFDMAGPWPCDADDVISLINQYASHPAQFKYNGKPFVSTFEGDGNAFDWASIKAAW  119

Query  160  GTEVFFAPNFHPG-----VGDFNAIQCALNWMAWPNNDNNKAPTPDHNVSVAEGDSKYIA  214
               +FF P++         G    +    +W AWPN   N            + D+ Y++
Sbjct  120  TGGIFFVPDWSSLGPATAAGAGGVVDGLFSWNAWPNGGTNM---------STDTDAAYLS  170

Query  215  ALNG-KPYIAPVSGWFSTHFGGEVPYSKNWVFPSDLLWYDRWQEILNLGPRFIEIVTWND  273
            AL G KPY+ PVS WF TH G      KNWV+  D LWYDRW++IL L P F+EI+TWND
Sbjct  171  ALKGGKPYMMPVSPWFFTHLGPPGYN-KNWVWRGDDLWYDRWEQILELQPDFVEIITWND  229

Query  274  YGESHYIGPLSSPHTDDGASKWVMDMPHNGWLEMSKPFIAAYKAGEKSANNYITEDKLIY  333
            YGESHYIGPL   H  DG+S WV  MPH+GW ++   +IAAYK G   +   ITED+L+Y
Sbjct  230  YGESHYIGPLRGKHAPDGSSNWVNGMPHDGWRDLLPYYIAAYKNG---STPTITEDQLVY  286

Query  334  WYRPTPKDINCDSTDTTMQGNPNNSSGNFFRGRPNGYESMTDEVFVVSLLKSPATVQVTS  393
            WYRP PKD  C S DTT              G P G E   D+VFVV+LL SPATV V+S
Sbjct  287  WYRPHPKDATCSSGDTT--------------GNPAGQELAQDKVFVVALLTSPATVTVSS  332

Query  394  GSSS-KTFQAQAGASAFSAPM-GVGKQQFSLLRNGQTVMS  431
            G ++ +TF   AG +  S P  G G    S+ RNG+TV S
Sbjct  333  GGNTQQTFDVPAGVNHGSVPFNGTGAVSVSISRNGKTVAS  372



Lambda      K        H        a         alpha
   0.317    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00010812

Length=285


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00010805

Length=285


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00017365

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376628 pfam01841, Transglut_core, Transglutaminase-like super...  70.5    2e-17


>CDD:376628 pfam01841, Transglut_core, Transglutaminase-like superfamily. 
 This family includes animal transglutaminases and other bacterial 
proteins of unknown function. Sequence conservation 
in this superfamily primarily involves three motifs that centre 
around conserved cysteine, histidine, and aspartate residues 
that form the catalytic triad in the structurally characterized 
transglutaminase, the human blood clotting factor XIIIa'. 
On the basis of the experimentally demonstrated activity 
of the Methanobacterium phage pseudomurein endoisopeptidase, 
it is proposed that many, if not all, microbial homologs 
of the transglutaminases are proteases and that the eukaryotic 
transglutaminases have evolved from an ancestral protease.
Length=108

 Score = 70.5 bits (173),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 27/110 (25%), Positives = 40/110 (36%), Gaps = 12/110 (11%)

Query  2    PTIAQGMTPPTPDETARGATRVELYRCSESTCGSYERFPRYSDVWQLLQSRRGRVGEWAN  61
              +A  +T    D   + A  +  Y     T     R P   D  + L + +G   ++A+
Sbjct  1    KALADRITGGATDPLEK-ARAIYDYVRKNITYDLPGRSPGDGDAEEFLFTGKGDCEDFAS  59

Query  62   CFSMFCRALGGRVRWVW----------NSEDYVWTEVYSEHQRRWVHVDA  101
             F    RALG   R+V             + + W EVY      WV VD 
Sbjct  60   LFVALLRALGIPARYVTGYLRGPDTVRGGDAHAWVEVYLP-GYGWVPVDP  108



Lambda      K        H        a         alpha
   0.322    0.134    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00017366

Length=285


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00010806

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00010808

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00017367

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00010809

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00010810

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00010811

Length=266


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00017368

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376628 pfam01841, Transglut_core, Transglutaminase-like super...  70.5    2e-17


>CDD:376628 pfam01841, Transglut_core, Transglutaminase-like superfamily. 
 This family includes animal transglutaminases and other bacterial 
proteins of unknown function. Sequence conservation 
in this superfamily primarily involves three motifs that centre 
around conserved cysteine, histidine, and aspartate residues 
that form the catalytic triad in the structurally characterized 
transglutaminase, the human blood clotting factor XIIIa'. 
On the basis of the experimentally demonstrated activity 
of the Methanobacterium phage pseudomurein endoisopeptidase, 
it is proposed that many, if not all, microbial homologs 
of the transglutaminases are proteases and that the eukaryotic 
transglutaminases have evolved from an ancestral protease.
Length=108

 Score = 70.5 bits (173),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 27/110 (25%), Positives = 40/110 (36%), Gaps = 12/110 (11%)

Query  2    PTIAQGMTPPTPDETARGATRVELYRCSESTCGSYERFPRYSDVWQLLQSRRGRVGEWAN  61
              +A  +T    D   + A  +  Y     T     R P   D  + L + +G   ++A+
Sbjct  1    KALADRITGGATDPLEK-ARAIYDYVRKNITYDLPGRSPGDGDAEEFLFTGKGDCEDFAS  59

Query  62   CFSMFCRALGGRVRWVW----------NSEDYVWTEVYSEHQRRWVHVDA  101
             F    RALG   R+V             + + W EVY      WV VD 
Sbjct  60   LFVALLRALGIPARYVTGYLRGPDTVRGGDAHAWVEVYLP-GYGWVPVDP  108



Lambda      K        H        a         alpha
   0.322    0.134    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00010814

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376628 pfam01841, Transglut_core, Transglutaminase-like super...  70.5    2e-17


>CDD:376628 pfam01841, Transglut_core, Transglutaminase-like superfamily. 
 This family includes animal transglutaminases and other bacterial 
proteins of unknown function. Sequence conservation 
in this superfamily primarily involves three motifs that centre 
around conserved cysteine, histidine, and aspartate residues 
that form the catalytic triad in the structurally characterized 
transglutaminase, the human blood clotting factor XIIIa'. 
On the basis of the experimentally demonstrated activity 
of the Methanobacterium phage pseudomurein endoisopeptidase, 
it is proposed that many, if not all, microbial homologs 
of the transglutaminases are proteases and that the eukaryotic 
transglutaminases have evolved from an ancestral protease.
Length=108

 Score = 70.5 bits (173),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 27/110 (25%), Positives = 40/110 (36%), Gaps = 12/110 (11%)

Query  2    PTIAQGMTPPTPDETARGATRVELYRCSESTCGSYERFPRYSDVWQLLQSRRGRVGEWAN  61
              +A  +T    D   + A  +  Y     T     R P   D  + L + +G   ++A+
Sbjct  1    KALADRITGGATDPLEK-ARAIYDYVRKNITYDLPGRSPGDGDAEEFLFTGKGDCEDFAS  59

Query  62   CFSMFCRALGGRVRWVW----------NSEDYVWTEVYSEHQRRWVHVDA  101
             F    RALG   R+V             + + W EVY      WV VD 
Sbjct  60   LFVALLRALGIPARYVTGYLRGPDTVRGGDAHAWVEVYLP-GYGWVPVDP  108



Lambda      K        H        a         alpha
   0.322    0.134    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00010813

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376628 pfam01841, Transglut_core, Transglutaminase-like super...  70.5    2e-17


>CDD:376628 pfam01841, Transglut_core, Transglutaminase-like superfamily. 
 This family includes animal transglutaminases and other bacterial 
proteins of unknown function. Sequence conservation 
in this superfamily primarily involves three motifs that centre 
around conserved cysteine, histidine, and aspartate residues 
that form the catalytic triad in the structurally characterized 
transglutaminase, the human blood clotting factor XIIIa'. 
On the basis of the experimentally demonstrated activity 
of the Methanobacterium phage pseudomurein endoisopeptidase, 
it is proposed that many, if not all, microbial homologs 
of the transglutaminases are proteases and that the eukaryotic 
transglutaminases have evolved from an ancestral protease.
Length=108

 Score = 70.5 bits (173),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 27/110 (25%), Positives = 40/110 (36%), Gaps = 12/110 (11%)

Query  2    PTIAQGMTPPTPDETARGATRVELYRCSESTCGSYERFPRYSDVWQLLQSRRGRVGEWAN  61
              +A  +T    D   + A  +  Y     T     R P   D  + L + +G   ++A+
Sbjct  1    KALADRITGGATDPLEK-ARAIYDYVRKNITYDLPGRSPGDGDAEEFLFTGKGDCEDFAS  59

Query  62   CFSMFCRALGGRVRWVW----------NSEDYVWTEVYSEHQRRWVHVDA  101
             F    RALG   R+V             + + W EVY      WV VD 
Sbjct  60   LFVALLRALGIPARYVTGYLRGPDTVRGGDAHAWVEVYLP-GYGWVPVDP  108



Lambda      K        H        a         alpha
   0.322    0.134    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00017369

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00010817

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00017370

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00010816

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00010815

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00017371

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00010818

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00010819

Length=167
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family...  122     5e-34


>CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family 20.  Members 
of this family belong to glycosyl transferase family 
20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions 
in the subunits of yeast trehalose-6-phosphate synthase/phosphate 
complex,.
Length=471

 Score = 122 bits (308),  Expect = 5e-34, Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 69/105 (66%), Gaps = 9/105 (9%)

Query  12   RLLIVSNRLPITIRRSEG-GKYEF--SMSSGGLVTGLSGLSKTTTFQWYGWPGLEVPEDE  68
            RL++VSNRLP+T  R E  GK+EF   MSSGGLV+ L+GLS  T   W GWPG+ V E E
Sbjct  2    RLVVVSNRLPVTAVRDEEDGKWEFSIKMSSGGLVSALNGLSAATEGVWVGWPGVPVDESE  61

Query  69   -LGSVKKRLKDEFNATPVFMDDKLADRHYNGFSSK--WPPPTTYH  110
                V + LK++FN  PVF+ D+L D +YNGFS+   WP    +H
Sbjct  62   PKDKVSQSLKEKFNCVPVFLSDELFDSYYNGFSNSILWP---LFH  103



Lambda      K        H        a         alpha
   0.315    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00010820

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.117    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00010821

Length=908
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family...  523     5e-179
CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase. Thi...  119     9e-31 


>CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family 20.  Members 
of this family belong to glycosyl transferase family 
20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions 
in the subunits of yeast trehalose-6-phosphate synthase/phosphate 
complex,.
Length=471

 Score = 523 bits (1350),  Expect = 5e-179, Method: Composition-based stats.
 Identities = 200/465 (43%), Positives = 281/465 (60%), Gaps = 25/465 (5%)

Query  160  DDWVVKAAEQGNGGLRNAVYAAAEAGILTNKMWVGTLGMPTDLLKDTTRASISETLEDEY  219
             ++ +K +  G     N + AA E       +WVG  G+P D  +   +  +S++L++++
Sbjct  23   WEFSIKMSSGGLVSALNGLSAATEG------VWVGWPGVPVDESEPKDK--VSQSLKEKF  74

Query  220  ESLTVFVRDSEFDGHYTHFCRSVLWPAFHYQ--MQESPRHTEYDDYSWRQYVKVNEAFAN  277
              + VF+ D  FD +Y  F  S+LWP FHY            +D   W  YVKVN+ FA+
Sbjct  75   NCVPVFLSDELFDSYYNGFSNSILWPLFHYMIPPNNEDA---FDRSWWDAYVKVNKLFAD  131

Query  278  TIAARWRPGDSIWIHDYHLLLLPQMLRQRLPQAEIGFFMHAAFPSSEVFRCLNSRDALLN  337
             I   ++ GD IWIHDYHL+LLPQMLR+RLP A+IGFF+H  FPSSE+FRCL  R+ +L 
Sbjct  132  KIVEVYKDGDLIWIHDYHLMLLPQMLRKRLPDAKIGFFLHTPFPSSEIFRCLPVREEILE  191

Query  338  GLLGSDFVGFQTEEYCHHFLQTCSRLLSLEVT-VGGVQLKDRFVRVKSIPMGIDANALDH  396
            GLLG+D +GF T +Y  HFL  CSRLL LE    GGV+   R V VK+ P+GID   ++ 
Sbjct  192  GLLGADLIGFHTYDYARHFLSCCSRLLGLETRSDGGVEYGGRTVSVKAFPIGIDPGRIES  251

Query  397  LRQTNEVKDWIANISSRYSGK-HLIVARDRLDVPGGIKQKLLAYELFLKKYPKWRENVVL  455
               +  V++ I  +  R+  K  LIV  DRLD   GI QKLLA+E FL++YP+WR  VVL
Sbjct  252  GLASPSVQEKIKELKERFGNKKKLIVGVDRLDYIKGIPQKLLAFERFLEEYPEWRGKVVL  311

Query  456  IQIASAS-----EMPELESQISKIATRINSKYSTLTHQPLVLLSQDISYSQFLALMSVAE  510
            +QIA  S     E   L SQI ++  RIN ++ TL + P+  L + + + + +AL +VA+
Sbjct  312  VQIAVPSRGDVEEYQNLRSQIEELVGRINGEFGTLDYTPVHFLHRPLDFDELIALYAVAD  371

Query  511  IFMVTSLREGMNLTSQDYIHCQDGKVTPQYHGSLILSEFTGSASIFHGHEFLVNPWDYRE  570
            + +VTSLR+GMNL + +Y+ CQ G+      G LILSEF G+A   +    LVNPWD  E
Sbjct  372  VCLVTSLRDGMNLVAYEYVACQQGR-----KGVLILSEFAGAAQSLNDGAILVNPWDIDE  426

Query  571  VADAINKALGMSPEQKQHNWEFLLKKKAPHTAVAWCNSFISALAE  615
            VA+AIN+AL MS E+++   + L K  + H +  W  SF+S L  
Sbjct  427  VAEAINEALTMSEEERKKRHKKLYKYISKHDSQHWAESFLSDLKR  471


>CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase.  This family 
consist of trehalose-phosphatases EC:3.1.3.12 these enzyme 
catalyze the de-phosphorylation of trehalose-6-phosphate to 
trehalose and orthophosphate. The aligned region is present 
in trehalose-phosphatases and comprises the entire length 
of the protein it is also found in the C-terminus of trehalose-6-phosphate 
synthase EC:2.4.1.15 adjacent to the trehalose-6-phosphate 
synthase domain - pfam00982. It would appear that 
the two equivalent genes in the E. coli otsBA operon otsA 
the trehalose-6-phosphate synthase and otsB trehalose-phosphatase 
(this family) have undergone gene fusion in most eukaryotes. 
Trehalose is a common disaccharide of bacteria, fungi 
and invertebrates that appears to play a major role in desiccation 
tolerance.
Length=234

 Score = 119 bits (300),  Expect = 9e-31, Method: Composition-based stats.
 Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 14/210 (7%)

Query  663  SLLEELLRDPKNLVYVTSNKSPEQIESQFASFTDRIGYIAENGCFKREIGTTQW--KPLV  720
            S L++L  DP N V + S +S  Q E  F      +G  AE+G F R  G   W  +  V
Sbjct  26   SALQDLASDPPNTVAIISGRSR-QEEDLFVG-VPNLGLAAEHGAFVRLPGGGDWYNQAEV  83

Query  721  -DMERAKDWRNGIRRVMQYYQERTDGSVLEERRCLLTFWYNNAQDPEIASRQASDLAD-M  778
             D+     W+  +  +++YY ERT GS +E ++  L++ Y NA D +  S QA +LA+ +
Sbjct  84   EDL----PWKKEVAPILEYYTERTPGSYVENKKSALSWHYRNA-DDDFGSFQAKELAEHL  138

Query  779  INGSRGSEAIRVVLSDGSVSVEPLDITKAKAAESILEQLPE---TPDFLFVTGGSRGDEA  835
             +  + +  +RV      V V P+ ++K KA E ILE+L      PDF    G  R DE 
Sbjct  139  ESVLQDNPPLRVTQGKKVVEVRPVGVSKGKAVEFILEELGSAGSLPDFPLCIGDDRTDED  198

Query  836  LFRWANRLQGENMIPDVTTVTVGSHATEAT  865
            +F      +   +  +V  V+VGS  + A+
Sbjct  199  MFSVLRPTKPSGVGIEVFAVSVGSKPSSAS  228



Lambda      K        H        a         alpha
   0.317    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1167072882


Query= TCONS_00010822

Length=913
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family...  524     5e-179
CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase. Thi...  119     9e-31 


>CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family 20.  Members 
of this family belong to glycosyl transferase family 
20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions 
in the subunits of yeast trehalose-6-phosphate synthase/phosphate 
complex,.
Length=471

 Score = 524 bits (1351),  Expect = 5e-179, Method: Composition-based stats.
 Identities = 200/465 (43%), Positives = 281/465 (60%), Gaps = 25/465 (5%)

Query  165  DDWVVKAAEQGNGGLRNAVYAAAEAGILTNKMWVGTLGMPTDLLKDTTRASISETLEDEY  224
             ++ +K +  G     N + AA E       +WVG  G+P D  +   +  +S++L++++
Sbjct  23   WEFSIKMSSGGLVSALNGLSAATEG------VWVGWPGVPVDESEPKDK--VSQSLKEKF  74

Query  225  ESLTVFVRDSEFDGHYTHFCRSVLWPAFHYQ--MQESPRHTEYDDYSWRQYVKVNEAFAN  282
              + VF+ D  FD +Y  F  S+LWP FHY            +D   W  YVKVN+ FA+
Sbjct  75   NCVPVFLSDELFDSYYNGFSNSILWPLFHYMIPPNNEDA---FDRSWWDAYVKVNKLFAD  131

Query  283  TIAARWRPGDSIWIHDYHLLLLPQMLRQRLPQAEIGFFMHAAFPSSEVFRCLNSRDALLN  342
             I   ++ GD IWIHDYHL+LLPQMLR+RLP A+IGFF+H  FPSSE+FRCL  R+ +L 
Sbjct  132  KIVEVYKDGDLIWIHDYHLMLLPQMLRKRLPDAKIGFFLHTPFPSSEIFRCLPVREEILE  191

Query  343  GLLGSDFVGFQTEEYCHHFLQTCSRLLSLEVT-VGGVQLKDRFVRVKSIPMGIDANALDH  401
            GLLG+D +GF T +Y  HFL  CSRLL LE    GGV+   R V VK+ P+GID   ++ 
Sbjct  192  GLLGADLIGFHTYDYARHFLSCCSRLLGLETRSDGGVEYGGRTVSVKAFPIGIDPGRIES  251

Query  402  LRQTNEVKDWIANISSRYSGK-HLIVARDRLDVPGGIKQKLLAYELFLKKYPKWRENVVL  460
               +  V++ I  +  R+  K  LIV  DRLD   GI QKLLA+E FL++YP+WR  VVL
Sbjct  252  GLASPSVQEKIKELKERFGNKKKLIVGVDRLDYIKGIPQKLLAFERFLEEYPEWRGKVVL  311

Query  461  IQIASAS-----EMPELESQISKIATRINSKYSTLTHQPLVLLSQDISYSQFLALMSVAE  515
            +QIA  S     E   L SQI ++  RIN ++ TL + P+  L + + + + +AL +VA+
Sbjct  312  VQIAVPSRGDVEEYQNLRSQIEELVGRINGEFGTLDYTPVHFLHRPLDFDELIALYAVAD  371

Query  516  IFMVTSLREGMNLTSQDYIHCQDGKVTPQYHGSLILSEFTGSASIFHGHEFLVNPWDYRE  575
            + +VTSLR+GMNL + +Y+ CQ G+      G LILSEF G+A   +    LVNPWD  E
Sbjct  372  VCLVTSLRDGMNLVAYEYVACQQGR-----KGVLILSEFAGAAQSLNDGAILVNPWDIDE  426

Query  576  VADAINKALGMSPEQKQHNWEFLLKKKAPHTAVAWCNSFISALAE  620
            VA+AIN+AL MS E+++   + L K  + H +  W  SF+S L  
Sbjct  427  VAEAINEALTMSEEERKKRHKKLYKYISKHDSQHWAESFLSDLKR  471


>CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase.  This family 
consist of trehalose-phosphatases EC:3.1.3.12 these enzyme 
catalyze the de-phosphorylation of trehalose-6-phosphate to 
trehalose and orthophosphate. The aligned region is present 
in trehalose-phosphatases and comprises the entire length 
of the protein it is also found in the C-terminus of trehalose-6-phosphate 
synthase EC:2.4.1.15 adjacent to the trehalose-6-phosphate 
synthase domain - pfam00982. It would appear that 
the two equivalent genes in the E. coli otsBA operon otsA 
the trehalose-6-phosphate synthase and otsB trehalose-phosphatase 
(this family) have undergone gene fusion in most eukaryotes. 
Trehalose is a common disaccharide of bacteria, fungi 
and invertebrates that appears to play a major role in desiccation 
tolerance.
Length=234

 Score = 119 bits (300),  Expect = 9e-31, Method: Composition-based stats.
 Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 14/210 (7%)

Query  668  SLLEELLRDPKNLVYVTSNKSPEQIESQFASFTDRIGYIAENGCFKREIGTTQW--KPLV  725
            S L++L  DP N V + S +S  Q E  F      +G  AE+G F R  G   W  +  V
Sbjct  26   SALQDLASDPPNTVAIISGRSR-QEEDLFVG-VPNLGLAAEHGAFVRLPGGGDWYNQAEV  83

Query  726  -DMERAKDWRNGIRRVMQYYQERTDGSVLEERRCLLTFWYNNAQDPEIASRQASDLAD-M  783
             D+     W+  +  +++YY ERT GS +E ++  L++ Y NA D +  S QA +LA+ +
Sbjct  84   EDL----PWKKEVAPILEYYTERTPGSYVENKKSALSWHYRNA-DDDFGSFQAKELAEHL  138

Query  784  INGSRGSEAIRVVLSDGSVSVEPLDITKAKAAESILEQLPE---TPDFLFVTGGSRGDEA  840
             +  + +  +RV      V V P+ ++K KA E ILE+L      PDF    G  R DE 
Sbjct  139  ESVLQDNPPLRVTQGKKVVEVRPVGVSKGKAVEFILEELGSAGSLPDFPLCIGDDRTDED  198

Query  841  LFRWANRLQGENMIPDVTTVTVGSHATEAT  870
            +F      +   +  +V  V+VGS  + A+
Sbjct  199  MFSVLRPTKPSGVGIEVFAVSVGSKPSSAS  228



Lambda      K        H        a         alpha
   0.317    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1174250452


Query= TCONS_00010823

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family...  331     1e-109


>CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family 20.  Members 
of this family belong to glycosyl transferase family 
20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions 
in the subunits of yeast trehalose-6-phosphate synthase/phosphate 
complex,.
Length=471

 Score = 331 bits (850),  Expect = 1e-109, Method: Composition-based stats.
 Identities = 131/300 (44%), Positives = 181/300 (60%), Gaps = 15/300 (5%)

Query  160  DDWVVKAAEQGNGGLRNAVYAAAEAGILTNKMWVGTLGMPTDLLKDTTRASISETLEDEY  219
             ++ +K +  G     N + AA E       +WVG  G+P D  +   +  +S++L++++
Sbjct  23   WEFSIKMSSGGLVSALNGLSAATEG------VWVGWPGVPVDESEPKDK--VSQSLKEKF  74

Query  220  ESLTVFVRDSEFDGHYTHFCRSVLWPAFHYQ--MQESPRHTEYDDYSWRQYVKVNEAFAN  277
              + VF+ D  FD +Y  F  S+LWP FHY            +D   W  YVKVN+ FA+
Sbjct  75   NCVPVFLSDELFDSYYNGFSNSILWPLFHYMIPPNNEDA---FDRSWWDAYVKVNKLFAD  131

Query  278  TIAARWRPGDSIWIHDYHLLLLPQMLRQRLPQAEIGFFMHAAFPSSEVFRCLNSRDALLN  337
             I   ++ GD IWIHDYHL+LLPQMLR+RLP A+IGFF+H  FPSSE+FRCL  R+ +L 
Sbjct  132  KIVEVYKDGDLIWIHDYHLMLLPQMLRKRLPDAKIGFFLHTPFPSSEIFRCLPVREEILE  191

Query  338  GLLGSDFVGFQTEEYCHHFLQTCSRLLSLEVT-VGGVQLKDRFVRVKSIPMGIDANALDH  396
            GLLG+D +GF T +Y  HFL  CSRLL LE    GGV+   R V VK+ P+GID   ++ 
Sbjct  192  GLLGADLIGFHTYDYARHFLSCCSRLLGLETRSDGGVEYGGRTVSVKAFPIGIDPGRIES  251

Query  397  LRQTNEVKDWIANISSRYSGK-HLIVARDRLDVPGGIKQKLLAYELFLKKYPKWRENVSV  455
               +  V++ I  +  R+  K  LIV  DRLD   GI QKLLA+E FL++YP+WR  V +
Sbjct  252  GLASPSVQEKIKELKERFGNKKKLIVGVDRLDYIKGIPQKLLAFERFLEEYPEWRGKVVL  311



Lambda      K        H        a         alpha
   0.319    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00010824

Length=913
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family...  524     5e-179
CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase. Thi...  119     9e-31 


>CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family 20.  Members 
of this family belong to glycosyl transferase family 
20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions 
in the subunits of yeast trehalose-6-phosphate synthase/phosphate 
complex,.
Length=471

 Score = 524 bits (1351),  Expect = 5e-179, Method: Composition-based stats.
 Identities = 200/465 (43%), Positives = 281/465 (60%), Gaps = 25/465 (5%)

Query  165  DDWVVKAAEQGNGGLRNAVYAAAEAGILTNKMWVGTLGMPTDLLKDTTRASISETLEDEY  224
             ++ +K +  G     N + AA E       +WVG  G+P D  +   +  +S++L++++
Sbjct  23   WEFSIKMSSGGLVSALNGLSAATEG------VWVGWPGVPVDESEPKDK--VSQSLKEKF  74

Query  225  ESLTVFVRDSEFDGHYTHFCRSVLWPAFHYQ--MQESPRHTEYDDYSWRQYVKVNEAFAN  282
              + VF+ D  FD +Y  F  S+LWP FHY            +D   W  YVKVN+ FA+
Sbjct  75   NCVPVFLSDELFDSYYNGFSNSILWPLFHYMIPPNNEDA---FDRSWWDAYVKVNKLFAD  131

Query  283  TIAARWRPGDSIWIHDYHLLLLPQMLRQRLPQAEIGFFMHAAFPSSEVFRCLNSRDALLN  342
             I   ++ GD IWIHDYHL+LLPQMLR+RLP A+IGFF+H  FPSSE+FRCL  R+ +L 
Sbjct  132  KIVEVYKDGDLIWIHDYHLMLLPQMLRKRLPDAKIGFFLHTPFPSSEIFRCLPVREEILE  191

Query  343  GLLGSDFVGFQTEEYCHHFLQTCSRLLSLEVT-VGGVQLKDRFVRVKSIPMGIDANALDH  401
            GLLG+D +GF T +Y  HFL  CSRLL LE    GGV+   R V VK+ P+GID   ++ 
Sbjct  192  GLLGADLIGFHTYDYARHFLSCCSRLLGLETRSDGGVEYGGRTVSVKAFPIGIDPGRIES  251

Query  402  LRQTNEVKDWIANISSRYSGK-HLIVARDRLDVPGGIKQKLLAYELFLKKYPKWRENVVL  460
               +  V++ I  +  R+  K  LIV  DRLD   GI QKLLA+E FL++YP+WR  VVL
Sbjct  252  GLASPSVQEKIKELKERFGNKKKLIVGVDRLDYIKGIPQKLLAFERFLEEYPEWRGKVVL  311

Query  461  IQIASAS-----EMPELESQISKIATRINSKYSTLTHQPLVLLSQDISYSQFLALMSVAE  515
            +QIA  S     E   L SQI ++  RIN ++ TL + P+  L + + + + +AL +VA+
Sbjct  312  VQIAVPSRGDVEEYQNLRSQIEELVGRINGEFGTLDYTPVHFLHRPLDFDELIALYAVAD  371

Query  516  IFMVTSLREGMNLTSQDYIHCQDGKVTPQYHGSLILSEFTGSASIFHGHEFLVNPWDYRE  575
            + +VTSLR+GMNL + +Y+ CQ G+      G LILSEF G+A   +    LVNPWD  E
Sbjct  372  VCLVTSLRDGMNLVAYEYVACQQGR-----KGVLILSEFAGAAQSLNDGAILVNPWDIDE  426

Query  576  VADAINKALGMSPEQKQHNWEFLLKKKAPHTAVAWCNSFISALAE  620
            VA+AIN+AL MS E+++   + L K  + H +  W  SF+S L  
Sbjct  427  VAEAINEALTMSEEERKKRHKKLYKYISKHDSQHWAESFLSDLKR  471


>CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase.  This family 
consist of trehalose-phosphatases EC:3.1.3.12 these enzyme 
catalyze the de-phosphorylation of trehalose-6-phosphate to 
trehalose and orthophosphate. The aligned region is present 
in trehalose-phosphatases and comprises the entire length 
of the protein it is also found in the C-terminus of trehalose-6-phosphate 
synthase EC:2.4.1.15 adjacent to the trehalose-6-phosphate 
synthase domain - pfam00982. It would appear that 
the two equivalent genes in the E. coli otsBA operon otsA 
the trehalose-6-phosphate synthase and otsB trehalose-phosphatase 
(this family) have undergone gene fusion in most eukaryotes. 
Trehalose is a common disaccharide of bacteria, fungi 
and invertebrates that appears to play a major role in desiccation 
tolerance.
Length=234

 Score = 119 bits (300),  Expect = 9e-31, Method: Composition-based stats.
 Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 14/210 (7%)

Query  668  SLLEELLRDPKNLVYVTSNKSPEQIESQFASFTDRIGYIAENGCFKREIGTTQW--KPLV  725
            S L++L  DP N V + S +S  Q E  F      +G  AE+G F R  G   W  +  V
Sbjct  26   SALQDLASDPPNTVAIISGRSR-QEEDLFVG-VPNLGLAAEHGAFVRLPGGGDWYNQAEV  83

Query  726  -DMERAKDWRNGIRRVMQYYQERTDGSVLEERRCLLTFWYNNAQDPEIASRQASDLAD-M  783
             D+     W+  +  +++YY ERT GS +E ++  L++ Y NA D +  S QA +LA+ +
Sbjct  84   EDL----PWKKEVAPILEYYTERTPGSYVENKKSALSWHYRNA-DDDFGSFQAKELAEHL  138

Query  784  INGSRGSEAIRVVLSDGSVSVEPLDITKAKAAESILEQLPE---TPDFLFVTGGSRGDEA  840
             +  + +  +RV      V V P+ ++K KA E ILE+L      PDF    G  R DE 
Sbjct  139  ESVLQDNPPLRVTQGKKVVEVRPVGVSKGKAVEFILEELGSAGSLPDFPLCIGDDRTDED  198

Query  841  LFRWANRLQGENMIPDVTTVTVGSHATEAT  870
            +F      +   +  +V  V+VGS  + A+
Sbjct  199  MFSVLRPTKPSGVGIEVFAVSVGSKPSSAS  228



Lambda      K        H        a         alpha
   0.317    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1174250452


Query= TCONS_00010825

Length=918
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family...  524     6e-179
CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase. Thi...  119     9e-31 


>CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family 20.  Members 
of this family belong to glycosyl transferase family 
20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions 
in the subunits of yeast trehalose-6-phosphate synthase/phosphate 
complex,.
Length=471

 Score = 524 bits (1351),  Expect = 6e-179, Method: Composition-based stats.
 Identities = 200/465 (43%), Positives = 281/465 (60%), Gaps = 25/465 (5%)

Query  170  DDWVVKAAEQGNGGLRNAVYAAAEAGILTNKMWVGTLGMPTDLLKDTTRASISETLEDEY  229
             ++ +K +  G     N + AA E       +WVG  G+P D  +   +  +S++L++++
Sbjct  23   WEFSIKMSSGGLVSALNGLSAATEG------VWVGWPGVPVDESEPKDK--VSQSLKEKF  74

Query  230  ESLTVFVRDSEFDGHYTHFCRSVLWPAFHYQ--MQESPRHTEYDDYSWRQYVKVNEAFAN  287
              + VF+ D  FD +Y  F  S+LWP FHY            +D   W  YVKVN+ FA+
Sbjct  75   NCVPVFLSDELFDSYYNGFSNSILWPLFHYMIPPNNEDA---FDRSWWDAYVKVNKLFAD  131

Query  288  TIAARWRPGDSIWIHDYHLLLLPQMLRQRLPQAEIGFFMHAAFPSSEVFRCLNSRDALLN  347
             I   ++ GD IWIHDYHL+LLPQMLR+RLP A+IGFF+H  FPSSE+FRCL  R+ +L 
Sbjct  132  KIVEVYKDGDLIWIHDYHLMLLPQMLRKRLPDAKIGFFLHTPFPSSEIFRCLPVREEILE  191

Query  348  GLLGSDFVGFQTEEYCHHFLQTCSRLLSLEVT-VGGVQLKDRFVRVKSIPMGIDANALDH  406
            GLLG+D +GF T +Y  HFL  CSRLL LE    GGV+   R V VK+ P+GID   ++ 
Sbjct  192  GLLGADLIGFHTYDYARHFLSCCSRLLGLETRSDGGVEYGGRTVSVKAFPIGIDPGRIES  251

Query  407  LRQTNEVKDWIANISSRYSGK-HLIVARDRLDVPGGIKQKLLAYELFLKKYPKWRENVVL  465
               +  V++ I  +  R+  K  LIV  DRLD   GI QKLLA+E FL++YP+WR  VVL
Sbjct  252  GLASPSVQEKIKELKERFGNKKKLIVGVDRLDYIKGIPQKLLAFERFLEEYPEWRGKVVL  311

Query  466  IQIASAS-----EMPELESQISKIATRINSKYSTLTHQPLVLLSQDISYSQFLALMSVAE  520
            +QIA  S     E   L SQI ++  RIN ++ TL + P+  L + + + + +AL +VA+
Sbjct  312  VQIAVPSRGDVEEYQNLRSQIEELVGRINGEFGTLDYTPVHFLHRPLDFDELIALYAVAD  371

Query  521  IFMVTSLREGMNLTSQDYIHCQDGKVTPQYHGSLILSEFTGSASIFHGHEFLVNPWDYRE  580
            + +VTSLR+GMNL + +Y+ CQ G+      G LILSEF G+A   +    LVNPWD  E
Sbjct  372  VCLVTSLRDGMNLVAYEYVACQQGR-----KGVLILSEFAGAAQSLNDGAILVNPWDIDE  426

Query  581  VADAINKALGMSPEQKQHNWEFLLKKKAPHTAVAWCNSFISALAE  625
            VA+AIN+AL MS E+++   + L K  + H +  W  SF+S L  
Sbjct  427  VAEAINEALTMSEEERKKRHKKLYKYISKHDSQHWAESFLSDLKR  471


>CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase.  This family 
consist of trehalose-phosphatases EC:3.1.3.12 these enzyme 
catalyze the de-phosphorylation of trehalose-6-phosphate to 
trehalose and orthophosphate. The aligned region is present 
in trehalose-phosphatases and comprises the entire length 
of the protein it is also found in the C-terminus of trehalose-6-phosphate 
synthase EC:2.4.1.15 adjacent to the trehalose-6-phosphate 
synthase domain - pfam00982. It would appear that 
the two equivalent genes in the E. coli otsBA operon otsA 
the trehalose-6-phosphate synthase and otsB trehalose-phosphatase 
(this family) have undergone gene fusion in most eukaryotes. 
Trehalose is a common disaccharide of bacteria, fungi 
and invertebrates that appears to play a major role in desiccation 
tolerance.
Length=234

 Score = 119 bits (300),  Expect = 9e-31, Method: Composition-based stats.
 Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 14/210 (7%)

Query  673  SLLEELLRDPKNLVYVTSNKSPEQIESQFASFTDRIGYIAENGCFKREIGTTQW--KPLV  730
            S L++L  DP N V + S +S  Q E  F      +G  AE+G F R  G   W  +  V
Sbjct  26   SALQDLASDPPNTVAIISGRSR-QEEDLFVG-VPNLGLAAEHGAFVRLPGGGDWYNQAEV  83

Query  731  -DMERAKDWRNGIRRVMQYYQERTDGSVLEERRCLLTFWYNNAQDPEIASRQASDLAD-M  788
             D+     W+  +  +++YY ERT GS +E ++  L++ Y NA D +  S QA +LA+ +
Sbjct  84   EDL----PWKKEVAPILEYYTERTPGSYVENKKSALSWHYRNA-DDDFGSFQAKELAEHL  138

Query  789  INGSRGSEAIRVVLSDGSVSVEPLDITKAKAAESILEQLPE---TPDFLFVTGGSRGDEA  845
             +  + +  +RV      V V P+ ++K KA E ILE+L      PDF    G  R DE 
Sbjct  139  ESVLQDNPPLRVTQGKKVVEVRPVGVSKGKAVEFILEELGSAGSLPDFPLCIGDDRTDED  198

Query  846  LFRWANRLQGENMIPDVTTVTVGSHATEAT  875
            +F      +   +  +V  V+VGS  + A+
Sbjct  199  MFSVLRPTKPSGVGIEVFAVSVGSKPSSAS  228



Lambda      K        H        a         alpha
   0.317    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1181428022


Query= TCONS_00010826

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / ...  280     6e-93


>CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / NADH oxidase 
family.  
Length=341

 Score = 280 bits (717),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 141/346 (41%), Positives = 189/346 (55%), Gaps = 19/346 (5%)

Query  8    KLFSPIQVGRMRLGHRLAMAPMTRFR-VDDDHVPLPIVKEHYEQRAVVPGTLLITEATLV  66
            KLF PI++G   L +R+ MAPMTR R +DD      ++ E+Y QR+  PGTL+ITE   V
Sbjct  1    KLFEPIKIGNTTLKNRIVMAPMTRLRSLDDGTKATGLLAEYYSQRSRGPGTLIITEGAFV  60

Query  67   SPRAGGYANVPGIWSEAQIAQWRQVTDAVHAKGSYIYMQLWGLGRVANPEVLKREGGFDL  126
            +P++GG+ N P IW + QI  WR++T+AVH  GS   +QLW LGR A  E        ++
Sbjct  61   NPQSGGFDNGPRIWDDEQIEGWRKLTEAVHKNGSKAGVQLWHLGREAPMEYRPDL---EV  117

Query  127  VSSSDVPTNEKAPAPRA-----LTEEEIHALIGDYAQAARNAIAAGFDGVEIHGANGYLI  181
               SD           A     +++EEI   I D+  AA+ A  AGFDGVEIHGANGYLI
Sbjct  118  DGPSDPFALGAQEFEIASPRYEMSKEEIKQHIQDFVDAAKRAREAGFDGVEIHGANGYLI  177

Query  182  DQFTQDTANKRTDAWGGSVEKRARFALEVTRAVVDAVGADR-TGIRFSPWSSF-QGMRMA  239
            +QF     N+RTD +GGS+E RARF LEV  AV +AVG +R  G R SP+     G+  A
Sbjct  178  NQFLSPGTNQRTDEYGGSLENRARFPLEVVDAVKEAVGQERIVGYRLSPFDVVGPGLDFA  237

Query  240  DPVPQFSYLARKTAE-----MKLAYVHVVESRISGNADTESTDQLDFFLEAYGHASPVII  294
            +   QF YL  +          LAY+H +E R  G     +  Q +          P+I 
Sbjct  238  ETA-QFIYLLAELGVRLPDGWHLAYIHAIEPRPRGAGPVRTRQQHNTLFVKGVWKGPLIT  296

Query  295  AGGYKADSALEAVDSRYKDYDVVIGIGRPWTSNPDLPFKIKAGIPL  340
             G     S    + S  K    ++ +GRP+ ++PDLPFK K G PL
Sbjct  297  VGRIDDPSVAAEIVS--KGRADLVAMGRPFLADPDLPFKAKKGRPL  340



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00010827

Length=669


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.123    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 849479040


Query= TCONS_00010828

Length=802


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.121    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0902    0.140     1.90     42.6     43.6 

Effective search space used: 1030247616


Query= TCONS_00010829

Length=795


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.122    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1020061552


Query= TCONS_00017373

Length=769


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.122    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 982227600


Query= TCONS_00017374

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / ...  280     6e-93


>CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / NADH oxidase 
family.  
Length=341

 Score = 280 bits (717),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 141/346 (41%), Positives = 189/346 (55%), Gaps = 19/346 (5%)

Query  8    KLFSPIQVGRMRLGHRLAMAPMTRFR-VDDDHVPLPIVKEHYEQRAVVPGTLLITEATLV  66
            KLF PI++G   L +R+ MAPMTR R +DD      ++ E+Y QR+  PGTL+ITE   V
Sbjct  1    KLFEPIKIGNTTLKNRIVMAPMTRLRSLDDGTKATGLLAEYYSQRSRGPGTLIITEGAFV  60

Query  67   SPRAGGYANVPGIWSEAQIAQWRQVTDAVHAKGSYIYMQLWGLGRVANPEVLKREGGFDL  126
            +P++GG+ N P IW + QI  WR++T+AVH  GS   +QLW LGR A  E        ++
Sbjct  61   NPQSGGFDNGPRIWDDEQIEGWRKLTEAVHKNGSKAGVQLWHLGREAPMEYRPDL---EV  117

Query  127  VSSSDVPTNEKAPAPRA-----LTEEEIHALIGDYAQAARNAIAAGFDGVEIHGANGYLI  181
               SD           A     +++EEI   I D+  AA+ A  AGFDGVEIHGANGYLI
Sbjct  118  DGPSDPFALGAQEFEIASPRYEMSKEEIKQHIQDFVDAAKRAREAGFDGVEIHGANGYLI  177

Query  182  DQFTQDTANKRTDAWGGSVEKRARFALEVTRAVVDAVGADR-TGIRFSPWSSF-QGMRMA  239
            +QF     N+RTD +GGS+E RARF LEV  AV +AVG +R  G R SP+     G+  A
Sbjct  178  NQFLSPGTNQRTDEYGGSLENRARFPLEVVDAVKEAVGQERIVGYRLSPFDVVGPGLDFA  237

Query  240  DPVPQFSYLARKTAE-----MKLAYVHVVESRISGNADTESTDQLDFFLEAYGHASPVII  294
            +   QF YL  +          LAY+H +E R  G     +  Q +          P+I 
Sbjct  238  ETA-QFIYLLAELGVRLPDGWHLAYIHAIEPRPRGAGPVRTRQQHNTLFVKGVWKGPLIT  296

Query  295  AGGYKADSALEAVDSRYKDYDVVIGIGRPWTSNPDLPFKIKAGIPL  340
             G     S    + S  K    ++ +GRP+ ++PDLPFK K G PL
Sbjct  297  VGRIDDPSVAAEIVS--KGRADLVAMGRPFLADPDLPFKAKKGRPL  340



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00017375

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / ...  280     6e-93


>CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / NADH oxidase 
family.  
Length=341

 Score = 280 bits (717),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 141/346 (41%), Positives = 189/346 (55%), Gaps = 19/346 (5%)

Query  8    KLFSPIQVGRMRLGHRLAMAPMTRFR-VDDDHVPLPIVKEHYEQRAVVPGTLLITEATLV  66
            KLF PI++G   L +R+ MAPMTR R +DD      ++ E+Y QR+  PGTL+ITE   V
Sbjct  1    KLFEPIKIGNTTLKNRIVMAPMTRLRSLDDGTKATGLLAEYYSQRSRGPGTLIITEGAFV  60

Query  67   SPRAGGYANVPGIWSEAQIAQWRQVTDAVHAKGSYIYMQLWGLGRVANPEVLKREGGFDL  126
            +P++GG+ N P IW + QI  WR++T+AVH  GS   +QLW LGR A  E        ++
Sbjct  61   NPQSGGFDNGPRIWDDEQIEGWRKLTEAVHKNGSKAGVQLWHLGREAPMEYRPDL---EV  117

Query  127  VSSSDVPTNEKAPAPRA-----LTEEEIHALIGDYAQAARNAIAAGFDGVEIHGANGYLI  181
               SD           A     +++EEI   I D+  AA+ A  AGFDGVEIHGANGYLI
Sbjct  118  DGPSDPFALGAQEFEIASPRYEMSKEEIKQHIQDFVDAAKRAREAGFDGVEIHGANGYLI  177

Query  182  DQFTQDTANKRTDAWGGSVEKRARFALEVTRAVVDAVGADR-TGIRFSPWSSF-QGMRMA  239
            +QF     N+RTD +GGS+E RARF LEV  AV +AVG +R  G R SP+     G+  A
Sbjct  178  NQFLSPGTNQRTDEYGGSLENRARFPLEVVDAVKEAVGQERIVGYRLSPFDVVGPGLDFA  237

Query  240  DPVPQFSYLARKTAE-----MKLAYVHVVESRISGNADTESTDQLDFFLEAYGHASPVII  294
            +   QF YL  +          LAY+H +E R  G     +  Q +          P+I 
Sbjct  238  ETA-QFIYLLAELGVRLPDGWHLAYIHAIEPRPRGAGPVRTRQQHNTLFVKGVWKGPLIT  296

Query  295  AGGYKADSALEAVDSRYKDYDVVIGIGRPWTSNPDLPFKIKAGIPL  340
             G     S    + S  K    ++ +GRP+ ++PDLPFK K G PL
Sbjct  297  VGRIDDPSVAAEIVS--KGRADLVAMGRPFLADPDLPFKAKKGRPL  340



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00010830

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / ...  280     6e-93


>CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / NADH oxidase 
family.  
Length=341

 Score = 280 bits (717),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 141/346 (41%), Positives = 189/346 (55%), Gaps = 19/346 (5%)

Query  8    KLFSPIQVGRMRLGHRLAMAPMTRFR-VDDDHVPLPIVKEHYEQRAVVPGTLLITEATLV  66
            KLF PI++G   L +R+ MAPMTR R +DD      ++ E+Y QR+  PGTL+ITE   V
Sbjct  1    KLFEPIKIGNTTLKNRIVMAPMTRLRSLDDGTKATGLLAEYYSQRSRGPGTLIITEGAFV  60

Query  67   SPRAGGYANVPGIWSEAQIAQWRQVTDAVHAKGSYIYMQLWGLGRVANPEVLKREGGFDL  126
            +P++GG+ N P IW + QI  WR++T+AVH  GS   +QLW LGR A  E        ++
Sbjct  61   NPQSGGFDNGPRIWDDEQIEGWRKLTEAVHKNGSKAGVQLWHLGREAPMEYRPDL---EV  117

Query  127  VSSSDVPTNEKAPAPRA-----LTEEEIHALIGDYAQAARNAIAAGFDGVEIHGANGYLI  181
               SD           A     +++EEI   I D+  AA+ A  AGFDGVEIHGANGYLI
Sbjct  118  DGPSDPFALGAQEFEIASPRYEMSKEEIKQHIQDFVDAAKRAREAGFDGVEIHGANGYLI  177

Query  182  DQFTQDTANKRTDAWGGSVEKRARFALEVTRAVVDAVGADR-TGIRFSPWSSF-QGMRMA  239
            +QF     N+RTD +GGS+E RARF LEV  AV +AVG +R  G R SP+     G+  A
Sbjct  178  NQFLSPGTNQRTDEYGGSLENRARFPLEVVDAVKEAVGQERIVGYRLSPFDVVGPGLDFA  237

Query  240  DPVPQFSYLARKTAE-----MKLAYVHVVESRISGNADTESTDQLDFFLEAYGHASPVII  294
            +   QF YL  +          LAY+H +E R  G     +  Q +          P+I 
Sbjct  238  ETA-QFIYLLAELGVRLPDGWHLAYIHAIEPRPRGAGPVRTRQQHNTLFVKGVWKGPLIT  296

Query  295  AGGYKADSALEAVDSRYKDYDVVIGIGRPWTSNPDLPFKIKAGIPL  340
             G     S    + S  K    ++ +GRP+ ++PDLPFK K G PL
Sbjct  297  VGRIDDPSVAAEIVS--KGRADLVAMGRPFLADPDLPFKAKKGRPL  340



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00010831

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / ...  280     6e-93


>CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / NADH oxidase 
family.  
Length=341

 Score = 280 bits (717),  Expect = 6e-93, Method: Composition-based stats.
 Identities = 141/346 (41%), Positives = 189/346 (55%), Gaps = 19/346 (5%)

Query  8    KLFSPIQVGRMRLGHRLAMAPMTRFR-VDDDHVPLPIVKEHYEQRAVVPGTLLITEATLV  66
            KLF PI++G   L +R+ MAPMTR R +DD      ++ E+Y QR+  PGTL+ITE   V
Sbjct  1    KLFEPIKIGNTTLKNRIVMAPMTRLRSLDDGTKATGLLAEYYSQRSRGPGTLIITEGAFV  60

Query  67   SPRAGGYANVPGIWSEAQIAQWRQVTDAVHAKGSYIYMQLWGLGRVANPEVLKREGGFDL  126
            +P++GG+ N P IW + QI  WR++T+AVH  GS   +QLW LGR A  E        ++
Sbjct  61   NPQSGGFDNGPRIWDDEQIEGWRKLTEAVHKNGSKAGVQLWHLGREAPMEYRPDL---EV  117

Query  127  VSSSDVPTNEKAPAPRA-----LTEEEIHALIGDYAQAARNAIAAGFDGVEIHGANGYLI  181
               SD           A     +++EEI   I D+  AA+ A  AGFDGVEIHGANGYLI
Sbjct  118  DGPSDPFALGAQEFEIASPRYEMSKEEIKQHIQDFVDAAKRAREAGFDGVEIHGANGYLI  177

Query  182  DQFTQDTANKRTDAWGGSVEKRARFALEVTRAVVDAVGADR-TGIRFSPWSSF-QGMRMA  239
            +QF     N+RTD +GGS+E RARF LEV  AV +AVG +R  G R SP+     G+  A
Sbjct  178  NQFLSPGTNQRTDEYGGSLENRARFPLEVVDAVKEAVGQERIVGYRLSPFDVVGPGLDFA  237

Query  240  DPVPQFSYLARKTAE-----MKLAYVHVVESRISGNADTESTDQLDFFLEAYGHASPVII  294
            +   QF YL  +          LAY+H +E R  G     +  Q +          P+I 
Sbjct  238  ETA-QFIYLLAELGVRLPDGWHLAYIHAIEPRPRGAGPVRTRQQHNTLFVKGVWKGPLIT  296

Query  295  AGGYKADSALEAVDSRYKDYDVVIGIGRPWTSNPDLPFKIKAGIPL  340
             G     S    + S  K    ++ +GRP+ ++PDLPFK K G PL
Sbjct  297  VGRIDDPSVAAEIVS--KGRADLVAMGRPFLADPDLPFKAKKGRPL  340



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00010832

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00010833

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family. Th...  289     1e-99


>CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family.  The Ady2 
protein is required for acetate in Saccharomyces cerevisiae, 
and is probably an acetate transporter. A homolog in Yarrowia 
lipolytica (GPR1) has a role in acetic acid sensitivity.
Length=207

 Score = 289 bits (743),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 135/219 (62%), Positives = 150/219 (68%), Gaps = 12/219 (5%)

Query  67   FGGEFQPGLYKSVEKRKFANPAPLGLCAFALTTFVLSCINMGARDITAPNIVVALAFGYG  126
            FGG   PG       RKFANPAPLGL AFALTTFVLS  N GAR IT PN+VV LA  YG
Sbjct  1    FGGTLNPG-LAPYPHRKFANPAPLGLAAFALTTFVLSLYNAGARGITIPNVVVGLALFYG  59

Query  127  GLVQLLAGMWEMAIGNTFGATALSSYGGFWISFAIVLTPGGFNIESALVKADNGSTSMFD  186
            GLVQLLAGMWE AIGNTFGATA SSYGGFW+SF  +  P  F I +A           F+
Sbjct  60   GLVQLLAGMWEFAIGNTFGATAFSSYGGFWLSFGAIFIP-SFGIAAAY----AEDPEEFN  114

Query  187  NSFGLFLMGWFIFTTILLFCTLRSTVAFFLLFFFLDLAFLLLGIGYIQRDSAGKPNPPVI  246
            N+ GL+L+GWFIFT +LL CTL+STVAFFLLFFFLDL FLLL  GY         N  V 
Sbjct  115  NALGLYLLGWFIFTFLLLLCTLKSTVAFFLLFFFLDLTFLLLAAGYFT------GNAGVT  168

Query  247  KAGGFFGLLAAFTAWYNALAGIADSSNSFFVIPVAHFPW  285
            KAGG FG++ AF AWYNA AG+A   NS+F +PV   PW
Sbjct  169  KAGGVFGIITAFLAWYNAFAGLATPQNSYFTLPVIPLPW  207



Lambda      K        H        a         alpha
   0.322    0.138    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00017376

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family. Th...  132     2e-40


>CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family.  The Ady2 
protein is required for acetate in Saccharomyces cerevisiae, 
and is probably an acetate transporter. A homolog in Yarrowia 
lipolytica (GPR1) has a role in acetic acid sensitivity.
Length=207

 Score = 132 bits (335),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 50/70 (71%), Positives = 51/70 (73%), Gaps = 1/70 (1%)

Query  67   FGGEFQPGLYKSVEKRKFANPAPLGLCAFALTTFVLSCINMGARDITAPNIVVALAFGYG  126
            FGG   PG       RKFANPAPLGL AFALTTFVLS  N GAR IT PN+VV LA  YG
Sbjct  1    FGGTLNPG-LAPYPHRKFANPAPLGLAAFALTTFVLSLYNAGARGITIPNVVVGLALFYG  59

Query  127  GLVQLLAGMW  136
            GLVQLLAGMW
Sbjct  60   GLVQLLAGMW  69



Lambda      K        H        a         alpha
   0.316    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00010834

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family. Th...  132     2e-40


>CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family.  The Ady2 
protein is required for acetate in Saccharomyces cerevisiae, 
and is probably an acetate transporter. A homolog in Yarrowia 
lipolytica (GPR1) has a role in acetic acid sensitivity.
Length=207

 Score = 132 bits (335),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 50/70 (71%), Positives = 51/70 (73%), Gaps = 1/70 (1%)

Query  67   FGGEFQPGLYKSVEKRKFANPAPLGLCAFALTTFVLSCINMGARDITAPNIVVALAFGYG  126
            FGG   PG       RKFANPAPLGL AFALTTFVLS  N GAR IT PN+VV LA  YG
Sbjct  1    FGGTLNPG-LAPYPHRKFANPAPLGLAAFALTTFVLSLYNAGARGITIPNVVVGLALFYG  59

Query  127  GLVQLLAGMW  136
            GLVQLLAGMW
Sbjct  60   GLVQLLAGMW  69



Lambda      K        H        a         alpha
   0.316    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00017377

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family. Th...  132     2e-40


>CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family.  The Ady2 
protein is required for acetate in Saccharomyces cerevisiae, 
and is probably an acetate transporter. A homolog in Yarrowia 
lipolytica (GPR1) has a role in acetic acid sensitivity.
Length=207

 Score = 132 bits (335),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 50/70 (71%), Positives = 51/70 (73%), Gaps = 1/70 (1%)

Query  67   FGGEFQPGLYKSVEKRKFANPAPLGLCAFALTTFVLSCINMGARDITAPNIVVALAFGYG  126
            FGG   PG       RKFANPAPLGL AFALTTFVLS  N GAR IT PN+VV LA  YG
Sbjct  1    FGGTLNPG-LAPYPHRKFANPAPLGLAAFALTTFVLSLYNAGARGITIPNVVVGLALFYG  59

Query  127  GLVQLLAGMW  136
            GLVQLLAGMW
Sbjct  60   GLVQLLAGMW  69



Lambda      K        H        a         alpha
   0.316    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00010835

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family. Th...  132     2e-40


>CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family.  The Ady2 
protein is required for acetate in Saccharomyces cerevisiae, 
and is probably an acetate transporter. A homolog in Yarrowia 
lipolytica (GPR1) has a role in acetic acid sensitivity.
Length=207

 Score = 132 bits (335),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 50/70 (71%), Positives = 51/70 (73%), Gaps = 1/70 (1%)

Query  67   FGGEFQPGLYKSVEKRKFANPAPLGLCAFALTTFVLSCINMGARDITAPNIVVALAFGYG  126
            FGG   PG       RKFANPAPLGL AFALTTFVLS  N GAR IT PN+VV LA  YG
Sbjct  1    FGGTLNPG-LAPYPHRKFANPAPLGLAAFALTTFVLSLYNAGARGITIPNVVVGLALFYG  59

Query  127  GLVQLLAGMW  136
            GLVQLLAGMW
Sbjct  60   GLVQLLAGMW  69



Lambda      K        H        a         alpha
   0.316    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00010837

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family. Th...  205     6e-68


>CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family.  The Ady2 
protein is required for acetate in Saccharomyces cerevisiae, 
and is probably an acetate transporter. A homolog in Yarrowia 
lipolytica (GPR1) has a role in acetic acid sensitivity.
Length=207

 Score = 205 bits (523),  Expect = 6e-68, Method: Composition-based stats.
 Identities = 82/136 (60%), Positives = 91/136 (67%), Gaps = 6/136 (4%)

Query  67   FGGEFQPGLYKSVEKRKFANPAPLGLCAFALTTFVLSCINMGARDITAPNIVVALAFGYG  126
            FGG   PG       RKFANPAPLGL AFALTTFVLS  N GAR IT PN+VV LA  YG
Sbjct  1    FGGTLNPG-LAPYPHRKFANPAPLGLAAFALTTFVLSLYNAGARGITIPNVVVGLALFYG  59

Query  127  GLVQLLAGMWEMAIGNTFGATALSSYGGFWISFAIVLTPGGFNIESALVKADNGSTSMFD  186
            GLVQLLAGMWE AIGNTFGATA SSYGGFW+SF  +  P  F I +A           F+
Sbjct  60   GLVQLLAGMWEFAIGNTFGATAFSSYGGFWLSFGAIFIP-SFGIAAAY----AEDPEEFN  114

Query  187  NSFGLFLMVRSIFTTI  202
            N+ GL+L+   IFT +
Sbjct  115  NALGLYLLGWFIFTFL  130



Lambda      K        H        a         alpha
   0.318    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00017378

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family. Th...  226     4e-76


>CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family.  The Ady2 
protein is required for acetate in Saccharomyces cerevisiae, 
and is probably an acetate transporter. A homolog in Yarrowia 
lipolytica (GPR1) has a role in acetic acid sensitivity.
Length=207

 Score = 226 bits (580),  Expect = 4e-76, Method: Composition-based stats.
 Identities = 92/146 (63%), Positives = 102/146 (70%), Gaps = 6/146 (4%)

Query  67   FGGEFQPGLYKSVEKRKFANPAPLGLCAFALTTFVLSCINMGARDITAPNIVVALAFGYG  126
            FGG   PG       RKFANPAPLGL AFALTTFVLS  N GAR IT PN+VV LA  YG
Sbjct  1    FGGTLNPG-LAPYPHRKFANPAPLGLAAFALTTFVLSLYNAGARGITIPNVVVGLALFYG  59

Query  127  GLVQLLAGMWEMAIGNTFGATALSSYGGFWISFAIVLTPGGFNIESALVKADNGSTSMFD  186
            GLVQLLAGMWE AIGNTFGATA SSYGGFW+SF  +  P  F I +A           F+
Sbjct  60   GLVQLLAGMWEFAIGNTFGATAFSSYGGFWLSFGAIFIP-SFGIAAAY----AEDPEEFN  114

Query  187  NSFGLFLMVWFIFTTILLFCTLRSTV  212
            N+ GL+L+ WFIFT +LL CTL+STV
Sbjct  115  NALGLYLLGWFIFTFLLLLCTLKSTV  140



Lambda      K        H        a         alpha
   0.323    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00010838

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family. Th...  289     1e-99


>CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family.  The Ady2 
protein is required for acetate in Saccharomyces cerevisiae, 
and is probably an acetate transporter. A homolog in Yarrowia 
lipolytica (GPR1) has a role in acetic acid sensitivity.
Length=207

 Score = 289 bits (743),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 135/219 (62%), Positives = 150/219 (68%), Gaps = 12/219 (5%)

Query  67   FGGEFQPGLYKSVEKRKFANPAPLGLCAFALTTFVLSCINMGARDITAPNIVVALAFGYG  126
            FGG   PG       RKFANPAPLGL AFALTTFVLS  N GAR IT PN+VV LA  YG
Sbjct  1    FGGTLNPG-LAPYPHRKFANPAPLGLAAFALTTFVLSLYNAGARGITIPNVVVGLALFYG  59

Query  127  GLVQLLAGMWEMAIGNTFGATALSSYGGFWISFAIVLTPGGFNIESALVKADNGSTSMFD  186
            GLVQLLAGMWE AIGNTFGATA SSYGGFW+SF  +  P  F I +A           F+
Sbjct  60   GLVQLLAGMWEFAIGNTFGATAFSSYGGFWLSFGAIFIP-SFGIAAAY----AEDPEEFN  114

Query  187  NSFGLFLMGWFIFTTILLFCTLRSTVAFFLLFFFLDLAFLLLGIGYIQRDSAGKPNPPVI  246
            N+ GL+L+GWFIFT +LL CTL+STVAFFLLFFFLDL FLLL  GY         N  V 
Sbjct  115  NALGLYLLGWFIFTFLLLLCTLKSTVAFFLLFFFLDLTFLLLAAGYFT------GNAGVT  168

Query  247  KAGGFFGLLAAFTAWYNALAGIADSSNSFFVIPVAHFPW  285
            KAGG FG++ AF AWYNA AG+A   NS+F +PV   PW
Sbjct  169  KAGGVFGIITAFLAWYNAFAGLATPQNSYFTLPVIPLPW  207



Lambda      K        H        a         alpha
   0.322    0.138    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00010836

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family. Th...  289     1e-99


>CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family.  The Ady2 
protein is required for acetate in Saccharomyces cerevisiae, 
and is probably an acetate transporter. A homolog in Yarrowia 
lipolytica (GPR1) has a role in acetic acid sensitivity.
Length=207

 Score = 289 bits (743),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 135/219 (62%), Positives = 150/219 (68%), Gaps = 12/219 (5%)

Query  67   FGGEFQPGLYKSVEKRKFANPAPLGLCAFALTTFVLSCINMGARDITAPNIVVALAFGYG  126
            FGG   PG       RKFANPAPLGL AFALTTFVLS  N GAR IT PN+VV LA  YG
Sbjct  1    FGGTLNPG-LAPYPHRKFANPAPLGLAAFALTTFVLSLYNAGARGITIPNVVVGLALFYG  59

Query  127  GLVQLLAGMWEMAIGNTFGATALSSYGGFWISFAIVLTPGGFNIESALVKADNGSTSMFD  186
            GLVQLLAGMWE AIGNTFGATA SSYGGFW+SF  +  P  F I +A           F+
Sbjct  60   GLVQLLAGMWEFAIGNTFGATAFSSYGGFWLSFGAIFIP-SFGIAAAY----AEDPEEFN  114

Query  187  NSFGLFLMGWFIFTTILLFCTLRSTVAFFLLFFFLDLAFLLLGIGYIQRDSAGKPNPPVI  246
            N+ GL+L+GWFIFT +LL CTL+STVAFFLLFFFLDL FLLL  GY         N  V 
Sbjct  115  NALGLYLLGWFIFTFLLLLCTLKSTVAFFLLFFFLDLTFLLLAAGYFT------GNAGVT  168

Query  247  KAGGFFGLLAAFTAWYNALAGIADSSNSFFVIPVAHFPW  285
            KAGG FG++ AF AWYNA AG+A   NS+F +PV   PW
Sbjct  169  KAGGVFGIITAFLAWYNAFAGLATPQNSYFTLPVIPLPW  207



Lambda      K        H        a         alpha
   0.322    0.138    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00010839

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family. Th...  203     4e-67


>CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family.  The Ady2 
protein is required for acetate in Saccharomyces cerevisiae, 
and is probably an acetate transporter. A homolog in Yarrowia 
lipolytica (GPR1) has a role in acetic acid sensitivity.
Length=207

 Score = 203 bits (520),  Expect = 4e-67, Method: Composition-based stats.
 Identities = 79/128 (62%), Positives = 87/128 (68%), Gaps = 6/128 (5%)

Query  67   FGGEFQPGLYKSVEKRKFANPAPLGLCAFALTTFVLSCINMGARDITAPNIVVALAFGYG  126
            FGG   PG       RKFANPAPLGL AFALTTFVLS  N GAR IT PN+VV LA  YG
Sbjct  1    FGGTLNPG-LAPYPHRKFANPAPLGLAAFALTTFVLSLYNAGARGITIPNVVVGLALFYG  59

Query  127  GLVQLLAGMWEMAIGNTFGATALSSYGGFWISFAIVLTPGGFNIESALVKADNGSTSMFD  186
            GLVQLLAGMWE AIGNTFGATA SSYGGFW+SF  +  P  F I +A           F+
Sbjct  60   GLVQLLAGMWEFAIGNTFGATAFSSYGGFWLSFGAIFIP-SFGIAAAY----AEDPEEFN  114

Query  187  NSFGLFLM  194
            N+ GL+L+
Sbjct  115  NALGLYLL  122



Lambda      K        H        a         alpha
   0.317    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00017379

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family. Th...  156     1e-49


>CDD:426106 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family.  The Ady2 
protein is required for acetate in Saccharomyces cerevisiae, 
and is probably an acetate transporter. A homolog in Yarrowia 
lipolytica (GPR1) has a role in acetic acid sensitivity.
Length=207

 Score = 156 bits (398),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 84/148 (57%), Positives = 98/148 (66%), Gaps = 11/148 (7%)

Query  1    MAIGNTFGATALSSYGGFWISFAIVLTPGGFNIESALVKADNGSTSMFDNSFGLFLMGWF  60
             AIGNTFGATA SSYGGFW+SF  +  P  F I +A           F+N+ GL+L+GWF
Sbjct  71   FAIGNTFGATAFSSYGGFWLSFGAIFIPS-FGIAAAY----AEDPEEFNNALGLYLLGWF  125

Query  61   IFTTILLFCTLRSTVAFFLLFFFLDLAFLLLGIGYIQRDSAGKPNPPVIKAGGFFGLLAA  120
            IFT +LL CTL+STVAFFLLFFFLDL FLLL  GY         N  V KAGG FG++ A
Sbjct  126  IFTFLLLLCTLKSTVAFFLLFFFLDLTFLLLAAGYFT------GNAGVTKAGGVFGIITA  179

Query  121  FTAWYNALAGIADSSNSFFVIPVAHFPW  148
            F AWYNA AG+A   NS+F +PV   PW
Sbjct  180  FLAWYNAFAGLATPQNSYFTLPVIPLPW  207



Lambda      K        H        a         alpha
   0.328    0.142    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00010840

Length=331


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.120    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00017380

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00017381

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400137 pfam07651, ANTH, ANTH domain. AP180 is an endocytotic ...  70.4    3e-14


>CDD:400137 pfam07651, ANTH, ANTH domain.  AP180 is an endocytotic accessory 
proteins that has been implicated in the formation of clathrin-coated 
pits. The domain is involved in phosphatidylinositol 
4,5-bisphosphate binding and is a universal adaptor for 
nucleation of clathrin coats.
Length=272

 Score = 70.4 bits (173),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  1    MSRPDSERALEIYKTFTAQTEEVVKFLGVARHFQSATRLEIPKLKHASTDLTRLLEDDL  59
            +S+PD++RAL IYK F  Q E + +F  V ++      LEIPKL H   +L   LE+ L
Sbjct  214  LSKPDADRALGIYKRFVKQFERLKEFYEVCKNLGYFRSLEIPKLPHIPPNLLEALEEYL  272



Lambda      K        H        a         alpha
   0.311    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00010841

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400137 pfam07651, ANTH, ANTH domain. AP180 is an endocytotic ...  70.4    3e-14


>CDD:400137 pfam07651, ANTH, ANTH domain.  AP180 is an endocytotic accessory 
proteins that has been implicated in the formation of clathrin-coated 
pits. The domain is involved in phosphatidylinositol 
4,5-bisphosphate binding and is a universal adaptor for 
nucleation of clathrin coats.
Length=272

 Score = 70.4 bits (173),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  1    MSRPDSERALEIYKTFTAQTEEVVKFLGVARHFQSATRLEIPKLKHASTDLTRLLEDDL  59
            +S+PD++RAL IYK F  Q E + +F  V ++      LEIPKL H   +L   LE+ L
Sbjct  214  LSKPDADRALGIYKRFVKQFERLKEFYEVCKNLGYFRSLEIPKLPHIPPNLLEALEEYL  272



Lambda      K        H        a         alpha
   0.311    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00010842

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400137 pfam07651, ANTH, ANTH domain. AP180 is an endocytotic ...  70.4    3e-14


>CDD:400137 pfam07651, ANTH, ANTH domain.  AP180 is an endocytotic accessory 
proteins that has been implicated in the formation of clathrin-coated 
pits. The domain is involved in phosphatidylinositol 
4,5-bisphosphate binding and is a universal adaptor for 
nucleation of clathrin coats.
Length=272

 Score = 70.4 bits (173),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  1    MSRPDSERALEIYKTFTAQTEEVVKFLGVARHFQSATRLEIPKLKHASTDLTRLLEDDL  59
            +S+PD++RAL IYK F  Q E + +F  V ++      LEIPKL H   +L   LE+ L
Sbjct  214  LSKPDADRALGIYKRFVKQFERLKEFYEVCKNLGYFRSLEIPKLPHIPPNLLEALEEYL  272



Lambda      K        H        a         alpha
   0.311    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00010843

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400137 pfam07651, ANTH, ANTH domain. AP180 is an endocytotic ...  70.4    3e-14


>CDD:400137 pfam07651, ANTH, ANTH domain.  AP180 is an endocytotic accessory 
proteins that has been implicated in the formation of clathrin-coated 
pits. The domain is involved in phosphatidylinositol 
4,5-bisphosphate binding and is a universal adaptor for 
nucleation of clathrin coats.
Length=272

 Score = 70.4 bits (173),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  1    MSRPDSERALEIYKTFTAQTEEVVKFLGVARHFQSATRLEIPKLKHASTDLTRLLEDDL  59
            +S+PD++RAL IYK F  Q E + +F  V ++      LEIPKL H   +L   LE+ L
Sbjct  214  LSKPDADRALGIYKRFVKQFERLKEFYEVCKNLGYFRSLEIPKLPHIPPNLLEALEEYL  272



Lambda      K        H        a         alpha
   0.311    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00010844

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400137 pfam07651, ANTH, ANTH domain. AP180 is an endocytotic ...  70.4    3e-14


>CDD:400137 pfam07651, ANTH, ANTH domain.  AP180 is an endocytotic accessory 
proteins that has been implicated in the formation of clathrin-coated 
pits. The domain is involved in phosphatidylinositol 
4,5-bisphosphate binding and is a universal adaptor for 
nucleation of clathrin coats.
Length=272

 Score = 70.4 bits (173),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 0/59 (0%)

Query  1    MSRPDSERALEIYKTFTAQTEEVVKFLGVARHFQSATRLEIPKLKHASTDLTRLLEDDL  59
            +S+PD++RAL IYK F  Q E + +F  V ++      LEIPKL H   +L   LE+ L
Sbjct  214  LSKPDADRALGIYKRFVKQFERLKEFYEVCKNLGYFRSLEIPKLPHIPPNLLEALEEYL  272



Lambda      K        H        a         alpha
   0.311    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00010845

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00017382

Length=110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459784 pfam00366, Ribosomal_S17, Ribosomal protein S17            97.8    5e-29


>CDD:459784 pfam00366, Ribosomal_S17, Ribosomal protein S17.  
Length=68

 Score = 97.8 bits (245),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 39/64 (61%), Gaps = 1/64 (2%)

Query  11  GRVVSTKMHRTIIIRREYLHYVPKYNRYEKRHKNLAAHVSPAFRVEEGDWVTVGQCRPLS  70
           G VVS KM +T+++R E L Y PKY +Y KR K   AH       + GD V +G+CRPLS
Sbjct  1   GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNE-CKVGDVVRIGECRPLS  59

Query  71  KTVC  74
           KT  
Sbjct  60  KTKR  63



Lambda      K        H        a         alpha
   0.324    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00017383

Length=341


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00010846

Length=110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459784 pfam00366, Ribosomal_S17, Ribosomal protein S17            97.8    5e-29


>CDD:459784 pfam00366, Ribosomal_S17, Ribosomal protein S17.  
Length=68

 Score = 97.8 bits (245),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 39/64 (61%), Gaps = 1/64 (2%)

Query  11  GRVVSTKMHRTIIIRREYLHYVPKYNRYEKRHKNLAAHVSPAFRVEEGDWVTVGQCRPLS  70
           G VVS KM +T+++R E L Y PKY +Y KR K   AH       + GD V +G+CRPLS
Sbjct  1   GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNE-CKVGDVVRIGECRPLS  59

Query  71  KTVC  74
           KT  
Sbjct  60  KTKR  63



Lambda      K        H        a         alpha
   0.324    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00010847

Length=110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459784 pfam00366, Ribosomal_S17, Ribosomal protein S17            97.8    5e-29


>CDD:459784 pfam00366, Ribosomal_S17, Ribosomal protein S17.  
Length=68

 Score = 97.8 bits (245),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 39/64 (61%), Gaps = 1/64 (2%)

Query  11  GRVVSTKMHRTIIIRREYLHYVPKYNRYEKRHKNLAAHVSPAFRVEEGDWVTVGQCRPLS  70
           G VVS KM +T+++R E L Y PKY +Y KR K   AH       + GD V +G+CRPLS
Sbjct  1   GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNE-CKVGDVVRIGECRPLS  59

Query  71  KTVC  74
           KT  
Sbjct  60  KTKR  63



Lambda      K        H        a         alpha
   0.324    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00010848

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  64.4    7e-14


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 64.4 bits (157),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 50/122 (41%), Gaps = 9/122 (7%)

Query  22   INIILALAY-----EYRYSNSLKPEKDKERAWLYYKNAISVFTELTLRRTDMLSVQALLG  76
            +  ILAL           S+S   ++  +    + +  I +  + +   + +  +QALL 
Sbjct  40   LLAILALGALFSESPTARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLL  99

Query  77   MALFLRGNSGTQSAMPLITAAIRTCHRLGLHRDTPR----PHLAPAEQEQRKRVFWIAFI  132
            + L+  G    +        AIR    LGLHRD         L   E E R+R+FW  F 
Sbjct  100  LELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFY  159

Query  133  LD  134
            LD
Sbjct  160  LD  161



Lambda      K        H        a         alpha
   0.324    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00010849

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  64.4    7e-14


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 64.4 bits (157),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 50/122 (41%), Gaps = 9/122 (7%)

Query  22   INIILALAY-----EYRYSNSLKPEKDKERAWLYYKNAISVFTELTLRRTDMLSVQALLG  76
            +  ILAL           S+S   ++  +    + +  I +  + +   + +  +QALL 
Sbjct  40   LLAILALGALFSESPTARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLL  99

Query  77   MALFLRGNSGTQSAMPLITAAIRTCHRLGLHRDTPR----PHLAPAEQEQRKRVFWIAFI  132
            + L+  G    +        AIR    LGLHRD         L   E E R+R+FW  F 
Sbjct  100  LELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFY  159

Query  133  LD  134
            LD
Sbjct  160  LD  161



Lambda      K        H        a         alpha
   0.324    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00010850

Length=1559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462424 pfam08317, Spc7, Spc7 kinetochore protein. This domain...  324     1e-102
CDD:465680 pfam18210, Knl1_RWD_C, Knl1 RWD C-terminal domain. Thi...  89.4    5e-21 


>CDD:462424 pfam08317, Spc7, Spc7 kinetochore protein.  This domain is found 
in cell division proteins which are required for kinetochore-spindle 
association.
Length=196

 Score = 324 bits (832),  Expect = 1e-102, Method: Composition-based stats.
 Identities = 116/202 (57%), Positives = 143/202 (71%), Gaps = 7/202 (3%)

Query  1010  EFEPIQLQDFLNMTNIHFMELTTTKRRHTTAPGSVSKRTARLSAESKAATASFEDCVAAG  1069
             E+EPI LQDFLNMT I FM+LTTTKRR T AP +       L    +    S ED V AG
Sbjct  2     EYEPISLQDFLNMTGIRFMDLTTTKRRSTIAPTA-------LRDAEEEEDISLEDYVVAG  54

Query  1070  FCTVPMLELYQHSCRELKSYISEGRQVIRSIEAETYAENPPLFREYATAPPDIRLLMDNQ  1129
              CT+PMLELYQHSCRELK YISEG+++ R IE ET  ENPPLFREY  A PD++ LMDNQ
Sbjct  55    ACTIPMLELYQHSCRELKKYISEGKRIFREIEEETLEENPPLFREYMEADPDVKALMDNQ  114

Query  1130  FRNVKTHARLQSKATWYEWRMKLLEGLKEGLYRHVDEMKADGDLLTKYETLLDGIVPALV  1189
             F+ VKT+ARL +K  WYEWRM+LLEGLKEGL  +++ ++ D  +L K E LLD ++P LV
Sbjct  115   FKLVKTNARLLAKKMWYEWRMQLLEGLKEGLEENLEGLEEDDAVLEKQEELLDELLPELV  174

Query  1190  EKQSALQEEAANLQQLTDEMES  1211
              + + L EE   LQ+  +E+ES
Sbjct  175   AEYAELMEELELLQERAEELES  196


>CDD:465680 pfam18210, Knl1_RWD_C, Knl1 RWD C-terminal domain.  This domain 
is found in Knl1, a sub-unit of the KMN network, present 
in Homo sapiens. The KMN network is the core of the outer kinetochore 
which is responsible for microtubule binding/stabilization 
and controls the spindle assembly checkpoint. This 
domain is the second of two RING finger, WD repeat, DEAD-like 
helicase (RWD) domains. The tandem RWD domains mediate kinetochore 
targeting of the microtubule-binding subunits by interacting 
with the Mis12 complex. The Mis12 complex is a KMN 
sub-complex that tethers directly onto the underlying chromatin 
layer.
Length=152

 Score = 89.4 bits (222),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 26/177 (15%)

Query  1240  ELQGQVQEKTNSLESGAELKAEFLAQIKEAERVKEECHGWSAKEISELTESVRKTELQTG  1299
             EL+ +++E    LE   E K E LA I EAER++EEC  W+++E+  L E +   E   G
Sbjct  1     ELKEELEELEEKLEELEERKQELLAAIGEAERIREEC--WTSEEVLRLKEELEALESLHG  58

Query  1300  WSIVSATPSGSPAGPLLTMSYREQLQLVFHPATFATENAAQPPSSIDEKTSPHLELKYHP  1359
             W I   +         L  +Y   ++L F         A+   SSID ++          
Sbjct  59    WRITEVSDD------TLVFTYLSDIELTFDF------GASPKISSIDLESYL--------  98

Query  1360  RNGAKSTVRAPQLSPIALLVLKSLQKHLKTLEHKTATIAPKHLLRFISNAWNSVLSL  1416
              +  K+   +  +  +A   L+S +  ++     T T  PK LL+ +S  W+    L
Sbjct  99    -DDEKAPPSSLLVHRLAFFFLQSARDWVRKY--PTQTSLPK-LLQDVSLVWSRCRLL  151



Lambda      K        H        a         alpha
   0.308    0.124    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1981164520


Query= TCONS_00010856

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.128    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00010853

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00010851

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00017384

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00017385

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00010854

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00010857

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00010855

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00010859

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00010858

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00010852

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.128    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00010860

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00017386

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00010861

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00010868

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00017388

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00017387

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00010865

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00010864

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00010863

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00010862

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00017390

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00017389

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00010869

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00010866

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00010867

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00017391

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00017392

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00017393

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00010870

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00010872

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00017394

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00017395

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00010874

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00017397

Length=587
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403030 pfam11702, DUF3295, Protein of unknown function (DUF32...  655     0.0  
CDD:430068 pfam08550, DUF1752, Fungal protein of unknown function...  58.2    5e-12


>CDD:403030 pfam11702, DUF3295, Protein of unknown function (DUF3295).  This 
family is conserved in fungi but the function is not known.
Length=489

 Score = 655 bits (1693),  Expect = 0.0, Method: Composition-based stats.
 Identities = 280/521 (54%), Positives = 343/521 (66%), Gaps = 46/521 (9%)

Query  81   AGDLPELSASVESAASEQAERIESHIKRSRCDLKPAVVREDSFSYLGRGKEKHITSLGLE  140
            + D+PELS SV+SAASE+A  I SH K      +P +VR+DS +   RGKE+HITS  LE
Sbjct  1    SEDVPELSGSVDSAASEEAVDISSHSKSPLDISRPRIVRQDSCASRSRGKERHITSDDLE  60

Query  141  RMVLNIKEKKNLEPLDPPM--TTVAPPVVDLTPRPSTLSPTPPSESTAKRTPSFPPFNNQ  198
            +MV++IKEKK LEPL  P+   T  PPVVD+TPRPS+  P+   + +       P     
Sbjct  61   KMVVSIKEKKQLEPLSAPLPTPTPTPPVVDITPRPSSPPPSATPQPSPTTEEPAPASPAP  120

Query  199  ALH-STASCST-TAPEGNDSDAANVNASDTSVSSSGMLPSRSCLIKSPSVVRGFSPSLVS  256
                ST+SCST TAP  N SDA     SDTSVS++G          S SVVRGFSPS +S
Sbjct  121  EPSSSTSSCSTSTAPSANSSDA-QTVGSDTSVSTTG---------SSHSVVRGFSPSQIS  170

Query  257  SSYRSQPRLAADPGPAQQPAQLKPTP---FKKKGGMFTLGGSSGDDDESSFEDRIAIQKP  313
            SSYRSQ +LA  P P+++ +   P P    KKKG MFTLGGSSGDDDESSFEDR+     
Sbjct  171  SSYRSQTQLATQPTPSKKTSPSAPKPKPVQKKKGAMFTLGGSSGDDDESSFEDRMQPS-E  229

Query  314  QHSSLSNELSKSANTNPSPSKKVTSFQEQVGIIKPVSERSYDNDEDAIETEDE-VSESAI  372
            + SSLS+ L K  +      KK TSF+++V   + + E S   DEDAIE++D+ + ESAI
Sbjct  230  ERSSLSDALRKPHS-LSPGQKKQTSFKDEVVT-RTIQESSA-EDEDAIESDDDYIDESAI  286

Query  373  EDDEDSDWE--DSVTESGRSSVEERELFKRVDSRPNLVSRRSLLTMMMHQPTKM---QGP  427
            EDD+D   +  DSV ESGRSSV+E+ELF+RVDSRPNL SRRSLLT+MMHQP +       
Sbjct  287  EDDDDDSSDWEDSVEESGRSSVDEKELFQRVDSRPNLTSRRSLLTLMMHQPDRAMALGNA  346

Query  428  ASRSSPALQRSRLTSPNGPSIPASPPEDEEESLTMRGPDVPRSKPIIVKPSP-QSVAHSP  486
            ASRS+PALQRSR +SPNGPS+ ASP + +E  L M G +VPRS+PII+  +     A SP
Sbjct  347  ASRSTPALQRSRTSSPNGPSLAASPNDSDEAPLMMPGNEVPRSQPIIMTTTNTHQAALSP  406

Query  487  RTTRRNMLATELTESLRRHLLWERQQKSATANAFLKRRHTTHDMANLQEYPEPNGALKGQ  546
            RTTRRNMLATELTESLRRHLLWERQQKS+TANA LKRRHT HD+ANL++YPE        
Sbjct  407  RTTRRNMLATELTESLRRHLLWERQQKSSTANAVLKRRHTAHDVANLKQYPEKV------  460

Query  547  TSQQNAGVPNGTSAKAHAEKDVASFNHYTDFGPWEYHVKGW  587
                          K   +    S+N Y D+GPWEYH KGW
Sbjct  461  ------------QMKDKDDAKNNSWNQYFDYGPWEYHAKGW  489


>CDD:430068 pfam08550, DUF1752, Fungal protein of unknown function (DUF1752). 
 This is a family of fungal proteins of unknown function. 
This short section domain is bounded by two highly conserved 
tryptophans. The family contains MKD1 that is thought to 
be a negative regulator of RAS-cAMP pathway in S.cerevisiae. 
the Sch.pombe member is a GAF1 transcription factor that is 
also associated with the zinc finger family GATA pfam00320.
Length=28

 Score = 58.2 bits (142),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 0/28 (0%)

Query  31  MWMVFSKCADYMEEGRRLENLSWRLWTR  58
           +W V++KC D +  G RLENLSWRLW +
Sbjct  1   LWKVYTKCKDSLPNGERLENLSWRLWNK  28



Lambda      K        H        a         alpha
   0.308    0.124    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 739741860


Query= TCONS_00017396

Length=587
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403030 pfam11702, DUF3295, Protein of unknown function (DUF32...  655     0.0  
CDD:430068 pfam08550, DUF1752, Fungal protein of unknown function...  58.2    5e-12


>CDD:403030 pfam11702, DUF3295, Protein of unknown function (DUF3295).  This 
family is conserved in fungi but the function is not known.
Length=489

 Score = 655 bits (1693),  Expect = 0.0, Method: Composition-based stats.
 Identities = 280/521 (54%), Positives = 343/521 (66%), Gaps = 46/521 (9%)

Query  81   AGDLPELSASVESAASEQAERIESHIKRSRCDLKPAVVREDSFSYLGRGKEKHITSLGLE  140
            + D+PELS SV+SAASE+A  I SH K      +P +VR+DS +   RGKE+HITS  LE
Sbjct  1    SEDVPELSGSVDSAASEEAVDISSHSKSPLDISRPRIVRQDSCASRSRGKERHITSDDLE  60

Query  141  RMVLNIKEKKNLEPLDPPM--TTVAPPVVDLTPRPSTLSPTPPSESTAKRTPSFPPFNNQ  198
            +MV++IKEKK LEPL  P+   T  PPVVD+TPRPS+  P+   + +       P     
Sbjct  61   KMVVSIKEKKQLEPLSAPLPTPTPTPPVVDITPRPSSPPPSATPQPSPTTEEPAPASPAP  120

Query  199  ALH-STASCST-TAPEGNDSDAANVNASDTSVSSSGMLPSRSCLIKSPSVVRGFSPSLVS  256
                ST+SCST TAP  N SDA     SDTSVS++G          S SVVRGFSPS +S
Sbjct  121  EPSSSTSSCSTSTAPSANSSDA-QTVGSDTSVSTTG---------SSHSVVRGFSPSQIS  170

Query  257  SSYRSQPRLAADPGPAQQPAQLKPTP---FKKKGGMFTLGGSSGDDDESSFEDRIAIQKP  313
            SSYRSQ +LA  P P+++ +   P P    KKKG MFTLGGSSGDDDESSFEDR+     
Sbjct  171  SSYRSQTQLATQPTPSKKTSPSAPKPKPVQKKKGAMFTLGGSSGDDDESSFEDRMQPS-E  229

Query  314  QHSSLSNELSKSANTNPSPSKKVTSFQEQVGIIKPVSERSYDNDEDAIETEDE-VSESAI  372
            + SSLS+ L K  +      KK TSF+++V   + + E S   DEDAIE++D+ + ESAI
Sbjct  230  ERSSLSDALRKPHS-LSPGQKKQTSFKDEVVT-RTIQESSA-EDEDAIESDDDYIDESAI  286

Query  373  EDDEDSDWE--DSVTESGRSSVEERELFKRVDSRPNLVSRRSLLTMMMHQPTKM---QGP  427
            EDD+D   +  DSV ESGRSSV+E+ELF+RVDSRPNL SRRSLLT+MMHQP +       
Sbjct  287  EDDDDDSSDWEDSVEESGRSSVDEKELFQRVDSRPNLTSRRSLLTLMMHQPDRAMALGNA  346

Query  428  ASRSSPALQRSRLTSPNGPSIPASPPEDEEESLTMRGPDVPRSKPIIVKPSP-QSVAHSP  486
            ASRS+PALQRSR +SPNGPS+ ASP + +E  L M G +VPRS+PII+  +     A SP
Sbjct  347  ASRSTPALQRSRTSSPNGPSLAASPNDSDEAPLMMPGNEVPRSQPIIMTTTNTHQAALSP  406

Query  487  RTTRRNMLATELTESLRRHLLWERQQKSATANAFLKRRHTTHDMANLQEYPEPNGALKGQ  546
            RTTRRNMLATELTESLRRHLLWERQQKS+TANA LKRRHT HD+ANL++YPE        
Sbjct  407  RTTRRNMLATELTESLRRHLLWERQQKSSTANAVLKRRHTAHDVANLKQYPEKV------  460

Query  547  TSQQNAGVPNGTSAKAHAEKDVASFNHYTDFGPWEYHVKGW  587
                          K   +    S+N Y D+GPWEYH KGW
Sbjct  461  ------------QMKDKDDAKNNSWNQYFDYGPWEYHAKGW  489


>CDD:430068 pfam08550, DUF1752, Fungal protein of unknown function (DUF1752). 
 This is a family of fungal proteins of unknown function. 
This short section domain is bounded by two highly conserved 
tryptophans. The family contains MKD1 that is thought to 
be a negative regulator of RAS-cAMP pathway in S.cerevisiae. 
the Sch.pombe member is a GAF1 transcription factor that is 
also associated with the zinc finger family GATA pfam00320.
Length=28

 Score = 58.2 bits (142),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 0/28 (0%)

Query  31  MWMVFSKCADYMEEGRRLENLSWRLWTR  58
           +W V++KC D +  G RLENLSWRLW +
Sbjct  1   LWKVYTKCKDSLPNGERLENLSWRLWNK  28



Lambda      K        H        a         alpha
   0.308    0.124    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 739741860


Query= TCONS_00010875

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00017399

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00010877

Length=587
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403030 pfam11702, DUF3295, Protein of unknown function (DUF32...  655     0.0  
CDD:430068 pfam08550, DUF1752, Fungal protein of unknown function...  58.2    5e-12


>CDD:403030 pfam11702, DUF3295, Protein of unknown function (DUF3295).  This 
family is conserved in fungi but the function is not known.
Length=489

 Score = 655 bits (1693),  Expect = 0.0, Method: Composition-based stats.
 Identities = 280/521 (54%), Positives = 343/521 (66%), Gaps = 46/521 (9%)

Query  81   AGDLPELSASVESAASEQAERIESHIKRSRCDLKPAVVREDSFSYLGRGKEKHITSLGLE  140
            + D+PELS SV+SAASE+A  I SH K      +P +VR+DS +   RGKE+HITS  LE
Sbjct  1    SEDVPELSGSVDSAASEEAVDISSHSKSPLDISRPRIVRQDSCASRSRGKERHITSDDLE  60

Query  141  RMVLNIKEKKNLEPLDPPM--TTVAPPVVDLTPRPSTLSPTPPSESTAKRTPSFPPFNNQ  198
            +MV++IKEKK LEPL  P+   T  PPVVD+TPRPS+  P+   + +       P     
Sbjct  61   KMVVSIKEKKQLEPLSAPLPTPTPTPPVVDITPRPSSPPPSATPQPSPTTEEPAPASPAP  120

Query  199  ALH-STASCST-TAPEGNDSDAANVNASDTSVSSSGMLPSRSCLIKSPSVVRGFSPSLVS  256
                ST+SCST TAP  N SDA     SDTSVS++G          S SVVRGFSPS +S
Sbjct  121  EPSSSTSSCSTSTAPSANSSDA-QTVGSDTSVSTTG---------SSHSVVRGFSPSQIS  170

Query  257  SSYRSQPRLAADPGPAQQPAQLKPTP---FKKKGGMFTLGGSSGDDDESSFEDRIAIQKP  313
            SSYRSQ +LA  P P+++ +   P P    KKKG MFTLGGSSGDDDESSFEDR+     
Sbjct  171  SSYRSQTQLATQPTPSKKTSPSAPKPKPVQKKKGAMFTLGGSSGDDDESSFEDRMQPS-E  229

Query  314  QHSSLSNELSKSANTNPSPSKKVTSFQEQVGIIKPVSERSYDNDEDAIETEDE-VSESAI  372
            + SSLS+ L K  +      KK TSF+++V   + + E S   DEDAIE++D+ + ESAI
Sbjct  230  ERSSLSDALRKPHS-LSPGQKKQTSFKDEVVT-RTIQESSA-EDEDAIESDDDYIDESAI  286

Query  373  EDDEDSDWE--DSVTESGRSSVEERELFKRVDSRPNLVSRRSLLTMMMHQPTKM---QGP  427
            EDD+D   +  DSV ESGRSSV+E+ELF+RVDSRPNL SRRSLLT+MMHQP +       
Sbjct  287  EDDDDDSSDWEDSVEESGRSSVDEKELFQRVDSRPNLTSRRSLLTLMMHQPDRAMALGNA  346

Query  428  ASRSSPALQRSRLTSPNGPSIPASPPEDEEESLTMRGPDVPRSKPIIVKPSP-QSVAHSP  486
            ASRS+PALQRSR +SPNGPS+ ASP + +E  L M G +VPRS+PII+  +     A SP
Sbjct  347  ASRSTPALQRSRTSSPNGPSLAASPNDSDEAPLMMPGNEVPRSQPIIMTTTNTHQAALSP  406

Query  487  RTTRRNMLATELTESLRRHLLWERQQKSATANAFLKRRHTTHDMANLQEYPEPNGALKGQ  546
            RTTRRNMLATELTESLRRHLLWERQQKS+TANA LKRRHT HD+ANL++YPE        
Sbjct  407  RTTRRNMLATELTESLRRHLLWERQQKSSTANAVLKRRHTAHDVANLKQYPEKV------  460

Query  547  TSQQNAGVPNGTSAKAHAEKDVASFNHYTDFGPWEYHVKGW  587
                          K   +    S+N Y D+GPWEYH KGW
Sbjct  461  ------------QMKDKDDAKNNSWNQYFDYGPWEYHAKGW  489


>CDD:430068 pfam08550, DUF1752, Fungal protein of unknown function (DUF1752). 
 This is a family of fungal proteins of unknown function. 
This short section domain is bounded by two highly conserved 
tryptophans. The family contains MKD1 that is thought to 
be a negative regulator of RAS-cAMP pathway in S.cerevisiae. 
the Sch.pombe member is a GAF1 transcription factor that is 
also associated with the zinc finger family GATA pfam00320.
Length=28

 Score = 58.2 bits (142),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 0/28 (0%)

Query  31  MWMVFSKCADYMEEGRRLENLSWRLWTR  58
           +W V++KC D +  G RLENLSWRLW +
Sbjct  1   LWKVYTKCKDSLPNGERLENLSWRLWNK  28



Lambda      K        H        a         alpha
   0.308    0.124    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 739741860


Query= TCONS_00010878

Length=560
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403030 pfam11702, DUF3295, Protein of unknown function (DUF32...  656     0.0  


>CDD:403030 pfam11702, DUF3295, Protein of unknown function (DUF3295).  This 
family is conserved in fungi but the function is not known.
Length=489

 Score = 656 bits (1695),  Expect = 0.0, Method: Composition-based stats.
 Identities = 280/521 (54%), Positives = 343/521 (66%), Gaps = 46/521 (9%)

Query  54   AGDLPELSASVESAASEQAERIESHIKRSRCDLKPAVVREDSFSYLGRGKEKHITSLGLE  113
            + D+PELS SV+SAASE+A  I SH K      +P +VR+DS +   RGKE+HITS  LE
Sbjct  1    SEDVPELSGSVDSAASEEAVDISSHSKSPLDISRPRIVRQDSCASRSRGKERHITSDDLE  60

Query  114  RMVLNIKEKKNLEPLDPPM--TTVAPPVVDLTPRPSTLSPTPPSESTAKRTPSFPPFNNQ  171
            +MV++IKEKK LEPL  P+   T  PPVVD+TPRPS+  P+   + +       P     
Sbjct  61   KMVVSIKEKKQLEPLSAPLPTPTPTPPVVDITPRPSSPPPSATPQPSPTTEEPAPASPAP  120

Query  172  ALH-STASCST-TAPEGNDSDAANVNASDTSVSSSGMLPSRSCLIKSPSVVRGFSPSLVS  229
                ST+SCST TAP  N SDA     SDTSVS++G          S SVVRGFSPS +S
Sbjct  121  EPSSSTSSCSTSTAPSANSSDA-QTVGSDTSVSTTG---------SSHSVVRGFSPSQIS  170

Query  230  SSYRSQPRLAADPGPAQQPAQLKPTP---FKKKGGMFTLGGSSGDDDESSFEDRIAIQKP  286
            SSYRSQ +LA  P P+++ +   P P    KKKG MFTLGGSSGDDDESSFEDR+     
Sbjct  171  SSYRSQTQLATQPTPSKKTSPSAPKPKPVQKKKGAMFTLGGSSGDDDESSFEDRMQPS-E  229

Query  287  QHSSLSNELSKSANTNPSPSKKVTSFQEQVGIIKPVSERSYDNDEDAIETEDE-VSESAI  345
            + SSLS+ L K  +      KK TSF+++V   + + E S   DEDAIE++D+ + ESAI
Sbjct  230  ERSSLSDALRKPHS-LSPGQKKQTSFKDEVVT-RTIQESSA-EDEDAIESDDDYIDESAI  286

Query  346  EDDEDSDWE--DSVTESGRSSVEERELFKRVDSRPNLVSRRSLLTMMMHQPTKM---QGP  400
            EDD+D   +  DSV ESGRSSV+E+ELF+RVDSRPNL SRRSLLT+MMHQP +       
Sbjct  287  EDDDDDSSDWEDSVEESGRSSVDEKELFQRVDSRPNLTSRRSLLTLMMHQPDRAMALGNA  346

Query  401  ASRSSPALQRSRLTSPNGPSIPASPPEDEEESLTMRGPDVPRSKPIIVKPSP-QSVAHSP  459
            ASRS+PALQRSR +SPNGPS+ ASP + +E  L M G +VPRS+PII+  +     A SP
Sbjct  347  ASRSTPALQRSRTSSPNGPSLAASPNDSDEAPLMMPGNEVPRSQPIIMTTTNTHQAALSP  406

Query  460  RTTRRNMLATELTESLRRHLLWERQQKSATANAFLKRRHTTHDMANLQEYPEPNGALKGQ  519
            RTTRRNMLATELTESLRRHLLWERQQKS+TANA LKRRHT HD+ANL++YPE        
Sbjct  407  RTTRRNMLATELTESLRRHLLWERQQKSSTANAVLKRRHTAHDVANLKQYPEKV------  460

Query  520  TSQQNAGVPNGTSAKAHAEKDVASFNHYTDFGPWEYHVKGW  560
                          K   +    S+N Y D+GPWEYH KGW
Sbjct  461  ------------QMKDKDDAKNNSWNQYFDYGPWEYHAKGW  489



Lambda      K        H        a         alpha
   0.309    0.125    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 699392304


Query= TCONS_00010879

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.136    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00010880

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00017400

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00010882

Length=826
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  58.9    2e-11


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 58.9 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (8%)

Query  724  CMHYGKSYRWFRFSCCAKVFPCDKCHDAATD-HP-NEHA-NRMICGFCSREQVYRPENCG  780
            C HY       R  CC K +PC  CHD   D HP + +A   M+C  C  EQ      CG
Sbjct  1    CKHY-HRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPV-AVLCG  58

Query  781  ICR  783
             C 
Sbjct  59   NCG  61



Lambda      K        H        a         alpha
   0.315    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1049360734


Query= TCONS_00010881

Length=849
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  58.9    2e-11


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 58.9 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (8%)

Query  747  CMHYGKSYRWFRFSCCAKVFPCDKCHDAATD-HP-NEHA-NRMICGFCSREQVYRPENCG  803
            C HY       R  CC K +PC  CHD   D HP + +A   M+C  C  EQ      CG
Sbjct  1    CKHY-HRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPV-AVLCG  58

Query  804  ICR  806
             C 
Sbjct  59   NCG  61



Lambda      K        H        a         alpha
   0.316    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1082377556


Query= TCONS_00010883

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00017401

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00010889

Length=831
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  58.9    2e-11


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 58.9 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (8%)

Query  724  CMHYGKSYRWFRFSCCAKVFPCDKCHDAATD-HP-NEHA-NRMICGFCSREQVYRPENCG  780
            C HY       R  CC K +PC  CHD   D HP + +A   M+C  C  EQ      CG
Sbjct  1    CKHY-HRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPV-AVLCG  58

Query  781  ICR  783
             C 
Sbjct  59   NCG  61



Lambda      K        H        a         alpha
   0.315    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1056538304


Query= TCONS_00010884

Length=831
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  58.9    2e-11


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 58.9 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (8%)

Query  724  CMHYGKSYRWFRFSCCAKVFPCDKCHDAATD-HP-NEHA-NRMICGFCSREQVYRPENCG  780
            C HY       R  CC K +PC  CHD   D HP + +A   M+C  C  EQ      CG
Sbjct  1    CKHY-HRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPV-AVLCG  58

Query  781  ICR  783
             C 
Sbjct  59   NCG  61



Lambda      K        H        a         alpha
   0.315    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1056538304


Query= TCONS_00010885

Length=831
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  58.9    2e-11


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 58.9 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (8%)

Query  724  CMHYGKSYRWFRFSCCAKVFPCDKCHDAATD-HP-NEHA-NRMICGFCSREQVYRPENCG  780
            C HY       R  CC K +PC  CHD   D HP + +A   M+C  C  EQ      CG
Sbjct  1    CKHY-HRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPV-AVLCG  58

Query  781  ICR  783
             C 
Sbjct  59   NCG  61



Lambda      K        H        a         alpha
   0.315    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1056538304


Query= TCONS_00010888

Length=831
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  58.9    2e-11


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 58.9 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (8%)

Query  724  CMHYGKSYRWFRFSCCAKVFPCDKCHDAATD-HP-NEHA-NRMICGFCSREQVYRPENCG  780
            C HY       R  CC K +PC  CHD   D HP + +A   M+C  C  EQ      CG
Sbjct  1    CKHY-HRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPV-AVLCG  58

Query  781  ICR  783
             C 
Sbjct  59   NCG  61



Lambda      K        H        a         alpha
   0.315    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1056538304


Query= TCONS_00010887

Length=648
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  57.4    4e-11


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 57.4 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (8%)

Query  541  CMHYGKSYRWFRFSCCAKVFPCDKCHDAATD-HP-NEHA-NRMICGFCSREQVYRPENCG  597
            C HY       R  CC K +PC  CHD   D HP + +A   M+C  C  EQ      CG
Sbjct  1    CKHY-HRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPV-AVLCG  58

Query  598  ICR  600
             C 
Sbjct  59   NCG  61



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 818508450


Query= TCONS_00010886

Length=723


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 915290608


Query= TCONS_00017402

Length=723


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 915290608


Query= TCONS_00017403

Length=648
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  57.4    4e-11


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 57.4 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (8%)

Query  541  CMHYGKSYRWFRFSCCAKVFPCDKCHDAATD-HP-NEHA-NRMICGFCSREQVYRPENCG  597
            C HY       R  CC K +PC  CHD   D HP + +A   M+C  C  EQ      CG
Sbjct  1    CKHY-HRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPV-AVLCG  58

Query  598  ICR  600
             C 
Sbjct  59   NCG  61



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 818508450


Query= TCONS_00017404

Length=723


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 915290608


Query= TCONS_00017406

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00017405

Length=582


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 732269720


Query= TCONS_00010890

Length=705


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 902571480


Query= TCONS_00010891

Length=854
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  58.9    2e-11


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 58.9 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (8%)

Query  747  CMHYGKSYRWFRFSCCAKVFPCDKCHDAATD-HP-NEHA-NRMICGFCSREQVYRPENCG  803
            C HY       R  CC K +PC  CHD   D HP + +A   M+C  C  EQ      CG
Sbjct  1    CKHY-HRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPV-AVLCG  58

Query  804  ICR  806
             C 
Sbjct  59   NCG  61



Lambda      K        H        a         alpha
   0.315    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1089555126


Query= TCONS_00010892

Length=854
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  58.9    2e-11


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 58.9 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (8%)

Query  747  CMHYGKSYRWFRFSCCAKVFPCDKCHDAATD-HP-NEHA-NRMICGFCSREQVYRPENCG  803
            C HY       R  CC K +PC  CHD   D HP + +A   M+C  C  EQ      CG
Sbjct  1    CKHY-HRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPV-AVLCG  58

Query  804  ICR  806
             C 
Sbjct  59   NCG  61



Lambda      K        H        a         alpha
   0.315    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1089555126


Query= TCONS_00017407

Length=849


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1082377556


Query= TCONS_00017408

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00017409

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00010893

Length=457


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 562869368


Query= TCONS_00010894

Length=648
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  57.4    4e-11


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 57.4 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (8%)

Query  541  CMHYGKSYRWFRFSCCAKVFPCDKCHDAATD-HP-NEHA-NRMICGFCSREQVYRPENCG  597
            C HY       R  CC K +PC  CHD   D HP + +A   M+C  C  EQ      CG
Sbjct  1    CKHY-HRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPV-AVLCG  58

Query  598  ICR  600
             C 
Sbjct  59   NCG  61



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 818508450


Query= TCONS_00017410

Length=540


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 679815634


Query= TCONS_00017411

Length=648
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  57.4    4e-11


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 57.4 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (8%)

Query  541  CMHYGKSYRWFRFSCCAKVFPCDKCHDAATD-HP-NEHA-NRMICGFCSREQVYRPENCG  597
            C HY       R  CC K +PC  CHD   D HP + +A   M+C  C  EQ      CG
Sbjct  1    CKHY-HRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPV-AVLCG  58

Query  598  ICR  600
             C 
Sbjct  59   NCG  61



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0802    0.140     1.90     42.6     43.6 

Effective search space used: 818508450


Query= TCONS_00017412

Length=450


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00010895

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  57.4    4e-11


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 57.4 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (8%)

Query  540  CMHYGKSYRWFRFSCCAKVFPCDKCHDAATD-HP-NEHA-NRMICGFCSREQVYRPENCG  596
            C HY       R  CC K +PC  CHD   D HP + +A   M+C  C  EQ      CG
Sbjct  1    CKHY-HRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPV-AVLCG  58

Query  597  ICR  599
             C 
Sbjct  59   NCG  61



Lambda      K        H        a         alpha
   0.317    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 817033660


Query= TCONS_00010896

Length=648
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  57.4    4e-11


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 57.4 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (8%)

Query  541  CMHYGKSYRWFRFSCCAKVFPCDKCHDAATD-HP-NEHA-NRMICGFCSREQVYRPENCG  597
            C HY       R  CC K +PC  CHD   D HP + +A   M+C  C  EQ      CG
Sbjct  1    CKHY-HRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPV-AVLCG  58

Query  598  ICR  600
             C 
Sbjct  59   NCG  61



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 818508450


Query= TCONS_00010897

Length=648
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461665 pfam05495, zf-CHY, CHY zinc finger. This family of dom...  57.4    4e-11


>CDD:461665 pfam05495, zf-CHY, CHY zinc finger.  This family of domains are 
likely to bind to zinc ions. They contain many conserved 
cysteine and histidine residues. We have named this domain after 
the N-terminal motif CXHY. This domain can be found in 
isolation in some proteins, but is also often associated with 
pfam00097. One of the proteins in this family is a mitochondrial 
intermembrane space protein called Hot13. This protein 
is involved in the assembly of small TIM complexes.
Length=75

 Score = 57.4 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (8%)

Query  541  CMHYGKSYRWFRFSCCAKVFPCDKCHDAATD-HP-NEHA-NRMICGFCSREQVYRPENCG  597
            C HY       R  CC K +PC  CHD   D HP + +A   M+C  C  EQ      CG
Sbjct  1    CKHY-HRNCKLRCPCCGKWYPCRLCHDEVEDEHPLDRYAVTEMLCMLCDTEQPV-AVLCG  58

Query  598  ICR  600
             C 
Sbjct  59   NCG  61



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 818508450


Query= TCONS_00010898

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00017413

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.523    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00010899

Length=256


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00010900

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462748 pfam09298, FAA_hydrolase_N, Fumarylacetoacetase N-term...  153     2e-46
CDD:460252 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hy...  129     1e-35


>CDD:462748 pfam09298, FAA_hydrolase_N, Fumarylacetoacetase N-terminal.  
The N-terminal domain of fumarylacetoacetate hydrolase is functionally 
uncharacterized, and adopts a structure consisting 
of an SH3-like barrel.
Length=104

 Score = 153 bits (390),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 53/110 (48%), Positives = 73/110 (66%), Gaps = 6/110 (5%)

Query  16   ANIPFGIISSAKITSPVAAVAVGDYALNLSIFASSGGFSQLPVIQPHLGVFSQPTLNAFA  75
             N+PFG+ S+A   +P   VA+GD  L+LS  A++G F  +   Q  L VFSQPTLNAF 
Sbjct  1    QNLPFGVFSTAGSPTPRIGVAIGDQVLDLSALAAAGLFDGIA--QLALDVFSQPTLNAFM  58

Query  76   ALGRPVHRQVREYIQSVFRADTPFPQILKDNSTLQKEALLPLSEVTNHLP  125
            ALGRPV R VR  +Q +  A    P +L+DN+ L+++AL+P ++VT HLP
Sbjct  59   ALGRPVWRAVRARLQELLSA----PPVLRDNAELREKALVPQADVTMHLP  104


>CDD:460252 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase 
family.  This family consists of fumarylacetoacetate (FAA) 
hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also 
includes HHDD isomerase/OPET decarboxylase from E. coli strain 
W. FAA is the last enzyme in the tyrosine catabolic pathway, 
it hydrolyzes fumarylacetoacetate into fumarate and acetoacetate 
which then join the citric acid cycle. Mutations 
in FAA cause type I tyrosinemia in humans this is an inherited 
disorder mainly affecting the liver leading to liver cirrhosis, 
hepatocellular carcinoma, renal tubular damages and neurologic 
crises amongst other symptoms. The enzymatic defect 
causes the toxic accumulation of phenylalanine/tyrosine catabolites. 
The E. coli W enzyme HHDD isomerase/OPET decarboxylase 
contains two copies of this domain and functions in fourth 
and fifth steps of the homoprotocatechuate pathway; here 
it decarboxylates OPET to HHDD and isomerizes this to OHED. 
The final products of this pathway are pyruvic acid and succinic 
semialdehyde. This family also includes various hydratases 
and 4-oxalocrotonate decarboxylases which are involved 
in the bacterial meta-cleavage pathways for degradation of 
aromatic compounds. 2-hydroxypentadienoic acid hydratase encoded 
by mhpD in E. coli is involved in the phenylpropionic acid 
pathway of E. coli and catalyzes the conversion of 2-hydroxy 
pentadienoate to 4-hydroxy-2-keto-pentanoate and uses a 
Mn2+ co-factor. OHED hydratase encoded by hpcG in E. coli is 
involved in the homoprotocatechuic acid (HPC) catabolism. 
XylI in P. putida is a 4-Oxalocrotonate decarboxylase.
Length=210

 Score = 129 bits (326),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 104/296 (35%), Gaps = 89/296 (30%)

Query  131  YTDFYAGLNHAYNVGVLFRGPENALQPNYKHLP-VGYHGRASSVVTSGTPIRRPNGQILA  189
                     HA   G        A       +P V +    SS++  G PI RP G    
Sbjct  1    VCVGLNYAEHAREAGK-------AEPVPDFPIPLVLFVKPPSSLIGPGDPIVRPAG----  49

Query  190  NPAANPKVPTFSPCKRLDIELELAAFVSKSNELGKPVSIDEAEDHIFGVVLMNDWSARDI  249
                           +LD E ELA  + +     + VS +EA D+IFG  L ND SARD+
Sbjct  50   -------------VTKLDYEAELAVVIGRP---ARDVSPEEALDYIFGYTLANDVSARDL  93

Query  250  QAWEYVPLGPFNAKNF--ATTITPWVVLLDALEPFRTAGLEPGNRESLLPYLREKRELNA  307
            Q  E  PL  F  K+F   T + PW+V  D L                          + 
Sbjct  94   QRREM-PLQWFRGKSFDGFTPLGPWIVTRDELP-------------------------DP  127

Query  308  YDIPLEVEITNAGGKPTLISRTNAKNLLYSFPQMLAHHTITGCNMNTGDLLGSGTISGKE  367
             D+ L + +        +    N  ++++S  +++AH +     +  GD++ +GT SG  
Sbjct  128  GDLRLRLRVNGE-----VRQDGNTSDMIFSPAELIAHLS-QFMTLRPGDIILTGTPSGVG  181

Query  368  NQTQGSLLEQTNGKNPLKLADGSERLFLEDGDTVVLRGMAGTEGNYVGFGDCVGTI  423
                                     +FL+ GDTV +           G G    T+
Sbjct  182  AGRAP-------------------PVFLKPGDTVEVEIE--------GLGTLRNTV  210



Lambda      K        H        a         alpha
   0.317    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00017414

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462748 pfam09298, FAA_hydrolase_N, Fumarylacetoacetase N-term...  153     2e-46
CDD:460252 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hy...  129     1e-35


>CDD:462748 pfam09298, FAA_hydrolase_N, Fumarylacetoacetase N-terminal.  
The N-terminal domain of fumarylacetoacetate hydrolase is functionally 
uncharacterized, and adopts a structure consisting 
of an SH3-like barrel.
Length=104

 Score = 153 bits (390),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 53/110 (48%), Positives = 73/110 (66%), Gaps = 6/110 (5%)

Query  16   ANIPFGIISSAKITSPVAAVAVGDYALNLSIFASSGGFSQLPVIQPHLGVFSQPTLNAFA  75
             N+PFG+ S+A   +P   VA+GD  L+LS  A++G F  +   Q  L VFSQPTLNAF 
Sbjct  1    QNLPFGVFSTAGSPTPRIGVAIGDQVLDLSALAAAGLFDGIA--QLALDVFSQPTLNAFM  58

Query  76   ALGRPVHRQVREYIQSVFRADTPFPQILKDNSTLQKEALLPLSEVTNHLP  125
            ALGRPV R VR  +Q +  A    P +L+DN+ L+++AL+P ++VT HLP
Sbjct  59   ALGRPVWRAVRARLQELLSA----PPVLRDNAELREKALVPQADVTMHLP  104


>CDD:460252 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase 
family.  This family consists of fumarylacetoacetate (FAA) 
hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also 
includes HHDD isomerase/OPET decarboxylase from E. coli strain 
W. FAA is the last enzyme in the tyrosine catabolic pathway, 
it hydrolyzes fumarylacetoacetate into fumarate and acetoacetate 
which then join the citric acid cycle. Mutations 
in FAA cause type I tyrosinemia in humans this is an inherited 
disorder mainly affecting the liver leading to liver cirrhosis, 
hepatocellular carcinoma, renal tubular damages and neurologic 
crises amongst other symptoms. The enzymatic defect 
causes the toxic accumulation of phenylalanine/tyrosine catabolites. 
The E. coli W enzyme HHDD isomerase/OPET decarboxylase 
contains two copies of this domain and functions in fourth 
and fifth steps of the homoprotocatechuate pathway; here 
it decarboxylates OPET to HHDD and isomerizes this to OHED. 
The final products of this pathway are pyruvic acid and succinic 
semialdehyde. This family also includes various hydratases 
and 4-oxalocrotonate decarboxylases which are involved 
in the bacterial meta-cleavage pathways for degradation of 
aromatic compounds. 2-hydroxypentadienoic acid hydratase encoded 
by mhpD in E. coli is involved in the phenylpropionic acid 
pathway of E. coli and catalyzes the conversion of 2-hydroxy 
pentadienoate to 4-hydroxy-2-keto-pentanoate and uses a 
Mn2+ co-factor. OHED hydratase encoded by hpcG in E. coli is 
involved in the homoprotocatechuic acid (HPC) catabolism. 
XylI in P. putida is a 4-Oxalocrotonate decarboxylase.
Length=210

 Score = 129 bits (326),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 104/296 (35%), Gaps = 89/296 (30%)

Query  131  YTDFYAGLNHAYNVGVLFRGPENALQPNYKHLP-VGYHGRASSVVTSGTPIRRPNGQILA  189
                     HA   G        A       +P V +    SS++  G PI RP G    
Sbjct  1    VCVGLNYAEHAREAGK-------AEPVPDFPIPLVLFVKPPSSLIGPGDPIVRPAG----  49

Query  190  NPAANPKVPTFSPCKRLDIELELAAFVSKSNELGKPVSIDEAEDHIFGVVLMNDWSARDI  249
                           +LD E ELA  + +     + VS +EA D+IFG  L ND SARD+
Sbjct  50   -------------VTKLDYEAELAVVIGRP---ARDVSPEEALDYIFGYTLANDVSARDL  93

Query  250  QAWEYVPLGPFNAKNF--ATTITPWVVLLDALEPFRTAGLEPGNRESLLPYLREKRELNA  307
            Q  E  PL  F  K+F   T + PW+V  D L                          + 
Sbjct  94   QRREM-PLQWFRGKSFDGFTPLGPWIVTRDELP-------------------------DP  127

Query  308  YDIPLEVEITNAGGKPTLISRTNAKNLLYSFPQMLAHHTITGCNMNTGDLLGSGTISGKE  367
             D+ L + +        +    N  ++++S  +++AH +     +  GD++ +GT SG  
Sbjct  128  GDLRLRLRVNGE-----VRQDGNTSDMIFSPAELIAHLS-QFMTLRPGDIILTGTPSGVG  181

Query  368  NQTQGSLLEQTNGKNPLKLADGSERLFLEDGDTVVLRGMAGTEGNYVGFGDCVGTI  423
                                     +FL+ GDTV +           G G    T+
Sbjct  182  AGRAP-------------------PVFLKPGDTVEVEIE--------GLGTLRNTV  210



Lambda      K        H        a         alpha
   0.317    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00017415

Length=748


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 951669408


Query= TCONS_00010902

Length=698


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 892247950


Query= TCONS_00010903

Length=560


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 699392304


Query= TCONS_00017416

Length=328


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00010904

Length=328


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00010901

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00010905

Length=520


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 649534314


Query= TCONS_00017417

Length=748


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 951669408


Query= TCONS_00010907

Length=698


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 892247950


Query= TCONS_00017418

Length=520


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 649534314


Query= TCONS_00010908

Length=110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460567 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family. The ...  81.8    3e-22


>CDD:460567 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family.  The pre-protein 
translocase of the mitochondrial outer membrane (Tom) 
allows the import of pre-proteins from the cytoplasm. Tom forms 
a complex with a number of proteins, including Tim17. Tim17 
and Tim23 are thought to form the translocation channel 
of the inner membrane. This family includes Tim17, Tim22 and 
Tim23. This family also includes Pmp24 a peroxisomal protein. 
The involvement of this domain in the targeting of PMP24 
remains to be proved. PMP24 was known as Pmp27 in.
Length=109

 Score = 81.8 bits (203),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 37/81 (46%), Positives = 48/81 (59%), Gaps = 4/81 (5%)

Query  13  LSDFGGAFCMGAIGGAVWHGVKGFRNSP----YGERRIGAITAIKARAPVLGGNFGVWGG  68
           L   GGAF MGA+ G V+  V G RN P       R  GA+ A+  R P LG NF V+GG
Sbjct  2   LYKTGGAFLMGAVLGGVFGLVYGARNRPPPLTAKLRLRGALNAVGKRGPSLGNNFAVFGG  61

Query  69  LFSTFDCAIKGIRKKEDPYNA  89
           L+S  +C ++  R KEDP+N+
Sbjct  62  LYSGIECGLEKYRGKEDPWNS  82



Lambda      K        H        a         alpha
   0.324    0.140    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00010909

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  221     1e-68


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 221 bits (566),  Expect = 1e-68, Method: Composition-based stats.
 Identities = 95/371 (26%), Positives = 176/371 (47%), Gaps = 33/371 (9%)

Query  2    QRQRKNLMPAFSYRHIKNLYPIFWSKSIEMVKLIEKDLHSRADAKDNIVRVSEWASRATL  61
            ++ R+ L P F+     +  P    ++ ++V+ + K     A     I  +++   RA L
Sbjct  96   RQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRK----TAGEPGVID-ITDLLFRAAL  150

Query  62   DIIGVAGMDHDFGSLHDSNN----ELTKHYRRLLEEPPLAMRIIFVLGVLFGSVGVVESL  117
            ++I        FGSL D       +  +    LL  P  + +++ +  +L          
Sbjct  151  NVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSP--SPQLLDLFPILKY-------F  201

Query  118  PLKRNREIRESSLYIRDVARQMIRKKEAKMKSQASAE-TGTDIV---SVALESGAFTEEE  173
            P    R+++ +   I+D+  ++I ++   + S   +     D +       +    T+EE
Sbjct  202  PGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEE  261

Query  174  LVDQMMTFLAAGHETTSTALQWSVYALCKHPDVQTRLREEVRTHLPPISPEHPEPLSAAT  233
            L   ++    AG +TTS+ L W++Y L KHP+VQ +LREE+   +           +   
Sbjct  262  LRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDK-----RSPTYDD  316

Query  234  LDSLPYLNAFCNEVFRFHPSVPGTV-RDAAKDTTLLGYPIPKGTRILVSPEVINHSKELW  292
            L ++PYL+A   E  R HP VP  + R+  KDT + GY IPKGT ++V+   ++   E++
Sbjct  317  LQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNLYALHRDPEVF  376

Query  293  GPDADQFNVERWLGSGRANTGGASSNYSFLTFLHGPRSCIGQGFAKAELACLVAAIVGRF  352
             P+ ++F+ ER+L       G    +++FL F  GPR+C+G+  A+ E+   +A ++  F
Sbjct  377  -PNPEEFDPERFLD----ENGKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNF  431

Query  353  QMELKDADAKL  363
            ++EL       
Sbjct  432  EVELPPGTDPP  442



Lambda      K        H        a         alpha
   0.319    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0711    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00010910

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  221     1e-68


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 221 bits (566),  Expect = 1e-68, Method: Composition-based stats.
 Identities = 95/371 (26%), Positives = 176/371 (47%), Gaps = 33/371 (9%)

Query  2    QRQRKNLMPAFSYRHIKNLYPIFWSKSIEMVKLIEKDLHSRADAKDNIVRVSEWASRATL  61
            ++ R+ L P F+     +  P    ++ ++V+ + K     A     I  +++   RA L
Sbjct  96   RQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRK----TAGEPGVID-ITDLLFRAAL  150

Query  62   DIIGVAGMDHDFGSLHDSNN----ELTKHYRRLLEEPPLAMRIIFVLGVLFGSVGVVESL  117
            ++I        FGSL D       +  +    LL  P  + +++ +  +L          
Sbjct  151  NVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSP--SPQLLDLFPILKY-------F  201

Query  118  PLKRNREIRESSLYIRDVARQMIRKKEAKMKSQASAE-TGTDIV---SVALESGAFTEEE  173
            P    R+++ +   I+D+  ++I ++   + S   +     D +       +    T+EE
Sbjct  202  PGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEE  261

Query  174  LVDQMMTFLAAGHETTSTALQWSVYALCKHPDVQTRLREEVRTHLPPISPEHPEPLSAAT  233
            L   ++    AG +TTS+ L W++Y L KHP+VQ +LREE+   +           +   
Sbjct  262  LRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDK-----RSPTYDD  316

Query  234  LDSLPYLNAFCNEVFRFHPSVPGTV-RDAAKDTTLLGYPIPKGTRILVSPEVINHSKELW  292
            L ++PYL+A   E  R HP VP  + R+  KDT + GY IPKGT ++V+   ++   E++
Sbjct  317  LQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNLYALHRDPEVF  376

Query  293  GPDADQFNVERWLGSGRANTGGASSNYSFLTFLHGPRSCIGQGFAKAELACLVAAIVGRF  352
             P+ ++F+ ER+L       G    +++FL F  GPR+C+G+  A+ E+   +A ++  F
Sbjct  377  -PNPEEFDPERFLD----ENGKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNF  431

Query  353  QMELKDADAKL  363
            ++EL       
Sbjct  432  EVELPPGTDPP  442



Lambda      K        H        a         alpha
   0.319    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00010911

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  221     1e-68


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 221 bits (566),  Expect = 1e-68, Method: Composition-based stats.
 Identities = 95/371 (26%), Positives = 176/371 (47%), Gaps = 33/371 (9%)

Query  2    QRQRKNLMPAFSYRHIKNLYPIFWSKSIEMVKLIEKDLHSRADAKDNIVRVSEWASRATL  61
            ++ R+ L P F+     +  P    ++ ++V+ + K     A     I  +++   RA L
Sbjct  96   RQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRK----TAGEPGVID-ITDLLFRAAL  150

Query  62   DIIGVAGMDHDFGSLHDSNN----ELTKHYRRLLEEPPLAMRIIFVLGVLFGSVGVVESL  117
            ++I        FGSL D       +  +    LL  P  + +++ +  +L          
Sbjct  151  NVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSP--SPQLLDLFPILKY-------F  201

Query  118  PLKRNREIRESSLYIRDVARQMIRKKEAKMKSQASAE-TGTDIV---SVALESGAFTEEE  173
            P    R+++ +   I+D+  ++I ++   + S   +     D +       +    T+EE
Sbjct  202  PGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEE  261

Query  174  LVDQMMTFLAAGHETTSTALQWSVYALCKHPDVQTRLREEVRTHLPPISPEHPEPLSAAT  233
            L   ++    AG +TTS+ L W++Y L KHP+VQ +LREE+   +           +   
Sbjct  262  LRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDK-----RSPTYDD  316

Query  234  LDSLPYLNAFCNEVFRFHPSVPGTV-RDAAKDTTLLGYPIPKGTRILVSPEVINHSKELW  292
            L ++PYL+A   E  R HP VP  + R+  KDT + GY IPKGT ++V+   ++   E++
Sbjct  317  LQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNLYALHRDPEVF  376

Query  293  GPDADQFNVERWLGSGRANTGGASSNYSFLTFLHGPRSCIGQGFAKAELACLVAAIVGRF  352
             P+ ++F+ ER+L       G    +++FL F  GPR+C+G+  A+ E+   +A ++  F
Sbjct  377  -PNPEEFDPERFLD----ENGKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNF  431

Query  353  QMELKDADAKL  363
            ++EL       
Sbjct  432  EVELPPGTDPP  442



Lambda      K        H        a         alpha
   0.319    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00010912

Length=117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279148 pfam00764, Arginosuc_synth, Arginosuccinate synthase. ...  158     6e-49


>CDD:279148 pfam00764, Arginosuc_synth, Arginosuccinate synthase.  This family 
contains a PP-loop motif.
Length=386

 Score = 158 bits (401),  Expect = 6e-49, Method: Composition-based stats.
 Identities = 55/116 (47%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query  1    MDENLAHCSYEAGILEDPNVTPPADMWKLTQDPLTAPDQPEDFTVHFETGIPVKLEYTEG  60
            +DENL   S EAGILEDP   PP D+++ T+DP  APD+P+   + FE G+PV L+    
Sbjct  171  IDENLWGRSIEAGILEDPWNAPPEDIYEWTKDPAKAPDEPDIVEIGFEKGVPVALDGEP-  229

Query  61   GQKKVATDAVDLFLTANTIARRNGVGRIDIVENRFIGIKSRGCYETPGLTCLRAAH  116
                     ++L    N IA  +GVGRIDIVE+R +GIKSR  YE P  T L  AH
Sbjct  230  ------VSPLELIEKLNEIAGAHGVGRIDIVEDRLVGIKSREIYEAPAATVLITAH  279



Lambda      K        H        a         alpha
   0.318    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00017419

Length=117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279148 pfam00764, Arginosuc_synth, Arginosuccinate synthase. ...  158     6e-49


>CDD:279148 pfam00764, Arginosuc_synth, Arginosuccinate synthase.  This family 
contains a PP-loop motif.
Length=386

 Score = 158 bits (401),  Expect = 6e-49, Method: Composition-based stats.
 Identities = 55/116 (47%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query  1    MDENLAHCSYEAGILEDPNVTPPADMWKLTQDPLTAPDQPEDFTVHFETGIPVKLEYTEG  60
            +DENL   S EAGILEDP   PP D+++ T+DP  APD+P+   + FE G+PV L+    
Sbjct  171  IDENLWGRSIEAGILEDPWNAPPEDIYEWTKDPAKAPDEPDIVEIGFEKGVPVALDGEP-  229

Query  61   GQKKVATDAVDLFLTANTIARRNGVGRIDIVENRFIGIKSRGCYETPGLTCLRAAH  116
                     ++L    N IA  +GVGRIDIVE+R +GIKSR  YE P  T L  AH
Sbjct  230  ------VSPLELIEKLNEIAGAHGVGRIDIVEDRLVGIKSREIYEAPAATVLITAH  279



Lambda      K        H        a         alpha
   0.318    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00010915

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / ...  173     1e-51


>CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / NADH oxidase 
family.  
Length=341

 Score = 173 bits (439),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 93/315 (30%), Positives = 133/315 (42%), Gaps = 21/315 (7%)

Query  1    MTPWHMAHLGGIAQRGPGFLMVEATAVEPEGRITPQDLGLWKDSQIEPLSRVIEFVHSQN  60
             T     +    ++     ++ E   V P+         +W D QIE   ++ E VH   
Sbjct  34   ATGLLAEYYSQRSRGPGTLIITEGAFVNPQSGGFDNGPRIWDDEQIEGWRKLTEAVHKNG  93

Query  61   QLIGVQIAHAGRKASTVAPWLSANDTASEKMGGWPGRVKGPTNVPFTVKNPVPKEMTKQD  120
               GVQ+ H GR+A              E  G  P          F + +P   EM+K++
Sbjct  94   SKAGVQLWHLGREAP------MEYRPDLEVDG--PSDPFALGAQEFEIASPR-YEMSKEE  144

Query  121  IEDLKTAWVAAVKRAVKAGADFIEIHNAHGYLLMSFLSPAVNTRTDEYGGSFENRIRLSL  180
            I+     +V A KRA +AG D +EIH A+GYL+  FLSP  N RTDEYGGS ENR R  L
Sbjct  145  IKQHIQDFVDAAKRAREAGFDGVEIHGANGYLINQFLSPGTNQRTDEYGGSLENRARFPL  204

Query  181  EIAKLTRENVPKDMPVFLRVSATDWLEEVQPNKPSWRGVDTVRFAKILAETGYVDVLDVS  240
            E+    +E V ++  V  R+S  D +       P     +T +F  +LAE G V + D  
Sbjct  205  EVVDAVKEAVGQERIVGYRLSPFDVVG------PGLDFAETAQFIYLLAELG-VRLPDGW  257

Query  241  SGGTHSEQHIHAKPGFQAPFAIAVKNA----VGDKLAVASVGMIASAHLANSLLEKDGLD  296
                +         G          N        K  + +VG I    +A  ++ K   D
Sbjct  258  H-LAYIHAIEPRPRGAGPVRTRQQHNTLFVKGVWKGPLITVGRIDDPSVAAEIVSKGRAD  316

Query  297  LVLVGRGFQKNPGLV  311
            LV +GR F  +P L 
Sbjct  317  LVAMGRPFLADPDLP  331



Lambda      K        H        a         alpha
   0.317    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00010914

Length=117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / ...  64.8    4e-14


>CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / NADH oxidase 
family.  
Length=341

 Score = 64.8 bits (158),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 19/74 (26%), Positives = 30/74 (41%), Gaps = 0/74 (0%)

Query  1    MTPWHMAHLGGIAQRGPGFLMVEATAVEPEGRITPQDLGLWKDSQIEPLSRVIEFVHSQN  60
             T     +    ++     ++ E   V P+         +W D QIE   ++ E VH   
Sbjct  34   ATGLLAEYYSQRSRGPGTLIITEGAFVNPQSGGFDNGPRIWDDEQIEGWRKLTEAVHKNG  93

Query  61   QLIGVQIAHAGRKA  74
               GVQ+ H GR+A
Sbjct  94   SKAGVQLWHLGREA  107



Lambda      K        H        a         alpha
   0.316    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00010913

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / ...  196     8e-60


>CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / NADH oxidase 
family.  
Length=341

 Score = 196 bits (500),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 114/351 (32%), Positives = 162/351 (46%), Gaps = 29/351 (8%)

Query  43   KLFRPLSVRGLTFHNRIGLSPLCQYSA-DDGHMTPWHMAHLGGIAQR--GPGFLMV-EAT  98
            KLF P+ +   T  NRI ++P+ +  + DDG      +A     +QR  GPG L++ E  
Sbjct  1    KLFEPIKIGNTTLKNRIVMAPMTRLRSLDDGTKATGLLAEY--YSQRSRGPGTLIITEGA  58

Query  99   AVEPEGRITPQDLGLWKDSQIEPLSRVIEFVHSQNQLIGVQIAHAGRKASTVAPWLSAND  158
             V P+         +W D QIE   ++ E VH      GVQ+ H GR+A           
Sbjct  59   FVNPQSGGFDNGPRIWDDEQIEGWRKLTEAVHKNGSKAGVQLWHLGREAP------MEYR  112

Query  159  TASEKMGGWPGRVKGPTNVPFTVKNPVPKEMTKQDIEDLKTAWVAAVKRAVKAGADFIEI  218
               E  G  P          F + +P   EM+K++I+     +V A KRA +AG D +EI
Sbjct  113  PDLEVDG--PSDPFALGAQEFEIASPR-YEMSKEEIKQHIQDFVDAAKRAREAGFDGVEI  169

Query  219  HNAHGYLLMSFLSPAVNTRTDEYGGSFENRIRLSLEIAKLTRENVPKDMPVFLRVSATDW  278
            H A+GYL+  FLSP  N RTDEYGGS ENR R  LE+    +E V ++  V  R+S  D 
Sbjct  170  HGANGYLINQFLSPGTNQRTDEYGGSLENRARFPLEVVDAVKEAVGQERIVGYRLSPFDV  229

Query  279  LEEVQPNKPSWRGVDTVRFAKILAETGYVDVLDVSSGG-THSEQHIHAKPG----FQAPF  333
            +       P     +T +F  +LAE G V + D       H+ +      G     Q   
Sbjct  230  VG------PGLDFAETAQFIYLLAELG-VRLPDGWHLAYIHAIEPRPRGAGPVRTRQQHN  282

Query  334  AIAVKNAVGDKLAVASVGMIASAHLANSLLEKDGLDLVLVGRGFQKNPGLV  384
             + VK     K  + +VG I    +A  ++ K   DLV +GR F  +P L 
Sbjct  283  TLFVKGVW--KGPLITVGRIDDPSVAAEIVSKGRADLVAMGRPFLADPDLP  331



Lambda      K        H        a         alpha
   0.317    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00010918

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00010917

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00010919

Length=601
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40...  81.6    2e-17


>CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  This 
family includes a range of zinc metallopeptidases belonging 
to several families in the peptidase classification. Family 
M20 are Glutamate carboxypeptidases. Peptidase family M25 contains 
X-His dipeptidases.
Length=315

 Score = 81.6 bits (202),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 101/316 (32%), Gaps = 73/316 (23%)

Query  118  LFYGHYDVVSADANRTKWNTDPYQLASIDGFLYGRGVSDNKGPILAALYAAADLARQKAL  177
            L  GH DVV  +         P++  + DG LYGRG  D KG +LAAL A   L  +   
Sbjct  1    LLRGHMDVVPDEET----WGWPFKS-TEDGKLYGRGHDDMKGGLLAALEALRALKEEGLK  55

Query  178  PCDVVFLIEGEEESGSQGFHETVRQHKPEIGSVDWILLAN----SYWLDDYNPCLTYGLR  233
               V  L + +EE G  G    +     E   VD +   +    +         +  G R
Sbjct  56   KGTVKLLFQPDEEGGMGGARALIEDGLLEREKVDAVFGLHIGEPTLLEGGIAIGVVTGHR  115

Query  234  GVVHANLIVT--SDH---PDLHSGIDGSALLDEPLKDLSMLLASLVGPKGRINIPGFHDL  288
            G +   + V     H   P  H G++        +   + L+ +L     R N+      
Sbjct  116  GSLRFRVTVKGKGGHASTP--HLGVN-------AIVAAARLILALQDIVSR-NVDPLDPA  165

Query  289  VLPLTEAEKQRFADVARILLPQHPEITDRDALINSLMHRWREPSLTIHSVEVPGSSKAAT  348
            V+                                              +V          
Sbjct  166  VV----------------------------------------------TVGNITGIPGGV  179

Query  349  TTISRKAKASLSIRVVPNQEADEVAANLTMYAQEQFDKLESQNDLTVEITGKSDPWLGDP  408
              I  +A+    IR++P ++ +E+   +    +        +  + VE      P L + 
Sbjct  180  NVIPGEAELKGDIRLLPGEDLEELEERIREILEAIAAAYGVK--VEVEYVEGGAPPLVN-  236

Query  409  DNEIFATLSEAITAAW  424
            D+ + A L EA    +
Sbjct  237  DSPLVAALREAAKELF  252



Lambda      K        H        a         alpha
   0.315    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 760663852


Query= TCONS_00010921

Length=446


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00010920

Length=415


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00010922

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00017420

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00010923

Length=966
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40...  80.5    1e-16


>CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  This 
family includes a range of zinc metallopeptidases belonging 
to several families in the peptidase classification. Family 
M20 are Glutamate carboxypeptidases. Peptidase family M25 contains 
X-His dipeptidases.
Length=315

 Score = 80.5 bits (199),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 101/316 (32%), Gaps = 73/316 (23%)

Query  483  LFYGHYDVVSADANRTKWNTDPYQLASIDGFLYGRGVSDNKGPILAALYAAADLARQKAL  542
            L  GH DVV  +         P++  + DG LYGRG  D KG +LAAL A   L  +   
Sbjct  1    LLRGHMDVVPDEET----WGWPFKS-TEDGKLYGRGHDDMKGGLLAALEALRALKEEGLK  55

Query  543  PCDVVFLIEGEEESGSQGFHETVRQHKPEIGSVDWILLAN----SYWLDDYNPCLTYGLR  598
               V  L + +EE G  G    +     E   VD +   +    +         +  G R
Sbjct  56   KGTVKLLFQPDEEGGMGGARALIEDGLLEREKVDAVFGLHIGEPTLLEGGIAIGVVTGHR  115

Query  599  GVVHANLIVT--SDH---PDLHSGIDGSALLDEPLKDLSMLLASLVGPKGRINIPGFHDL  653
            G +   + V     H   P  H G++        +   + L+ +L     R N+      
Sbjct  116  GSLRFRVTVKGKGGHASTP--HLGVN-------AIVAAARLILALQDIVSR-NVDPLDPA  165

Query  654  VLPLTEAEKQRFADVARILLPQHPEITDRDALINSLMHRWREPSLTIHSVEVPGSSKAAT  713
            V+                                              +V          
Sbjct  166  VV----------------------------------------------TVGNITGIPGGV  179

Query  714  TTISRKAKASLSIRVVPNQEADEVAANLTMYAQEQFDKLESQNDLTVEITGKSDPWLGDP  773
              I  +A+    IR++P ++ +E+   +    +        +  + VE      P L + 
Sbjct  180  NVIPGEAELKGDIRLLPGEDLEELEERIREILEAIAAAYGVK--VEVEYVEGGAPPLVN-  236

Query  774  DNEIFATLSEAITAAW  789
            D+ + A L EA    +
Sbjct  237  DSPLVAALREAAKELF  252



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1231812120


Query= TCONS_00017422

Length=997
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40...  81.2    5e-17


>CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  This 
family includes a range of zinc metallopeptidases belonging 
to several families in the peptidase classification. Family 
M20 are Glutamate carboxypeptidases. Peptidase family M25 contains 
X-His dipeptidases.
Length=315

 Score = 81.2 bits (201),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 101/316 (32%), Gaps = 73/316 (23%)

Query  514  LFYGHYDVVSADANRTKWNTDPYQLASIDGFLYGRGVSDNKGPILAALYAAADLARQKAL  573
            L  GH DVV  +         P++  + DG LYGRG  D KG +LAAL A   L  +   
Sbjct  1    LLRGHMDVVPDEET----WGWPFKS-TEDGKLYGRGHDDMKGGLLAALEALRALKEEGLK  55

Query  574  PCDVVFLIEGEEESGSQGFHETVRQHKPEIGSVDWILLAN----SYWLDDYNPCLTYGLR  629
               V  L + +EE G  G    +     E   VD +   +    +         +  G R
Sbjct  56   KGTVKLLFQPDEEGGMGGARALIEDGLLEREKVDAVFGLHIGEPTLLEGGIAIGVVTGHR  115

Query  630  GVVHANLIVT--SDH---PDLHSGIDGSALLDEPLKDLSMLLASLVGPKGRINIPGFHDL  684
            G +   + V     H   P  H G++        +   + L+ +L     R N+      
Sbjct  116  GSLRFRVTVKGKGGHASTP--HLGVN-------AIVAAARLILALQDIVSR-NVDPLDPA  165

Query  685  VLPLTEAEKQRFADVARILLPQHPEITDRDALINSLMHRWREPSLTIHSVEVPGSSKAAT  744
            V+                                              +V          
Sbjct  166  VV----------------------------------------------TVGNITGIPGGV  179

Query  745  TTISRKAKASLSIRVVPNQEADEVAANLTMYAQEQFDKLESQNDLTVEITGKSDPWLGDP  804
              I  +A+    IR++P ++ +E+   +    +        +  + VE      P L + 
Sbjct  180  NVIPGEAELKGDIRLLPGEDLEELEERIREILEAIAAAYGVK--VEVEYVEGGAPPLVN-  236

Query  805  DNEIFATLSEAITAAW  820
            D+ + A L EA    +
Sbjct  237  DSPLVAALREAAKELF  252



Lambda      K        H        a         alpha
   0.316    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1275704276


Query= TCONS_00017421

Length=966
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40...  80.5    1e-16


>CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  This 
family includes a range of zinc metallopeptidases belonging 
to several families in the peptidase classification. Family 
M20 are Glutamate carboxypeptidases. Peptidase family M25 contains 
X-His dipeptidases.
Length=315

 Score = 80.5 bits (199),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 101/316 (32%), Gaps = 73/316 (23%)

Query  483  LFYGHYDVVSADANRTKWNTDPYQLASIDGFLYGRGVSDNKGPILAALYAAADLARQKAL  542
            L  GH DVV  +         P++  + DG LYGRG  D KG +LAAL A   L  +   
Sbjct  1    LLRGHMDVVPDEET----WGWPFKS-TEDGKLYGRGHDDMKGGLLAALEALRALKEEGLK  55

Query  543  PCDVVFLIEGEEESGSQGFHETVRQHKPEIGSVDWILLAN----SYWLDDYNPCLTYGLR  598
               V  L + +EE G  G    +     E   VD +   +    +         +  G R
Sbjct  56   KGTVKLLFQPDEEGGMGGARALIEDGLLEREKVDAVFGLHIGEPTLLEGGIAIGVVTGHR  115

Query  599  GVVHANLIVT--SDH---PDLHSGIDGSALLDEPLKDLSMLLASLVGPKGRINIPGFHDL  653
            G +   + V     H   P  H G++        +   + L+ +L     R N+      
Sbjct  116  GSLRFRVTVKGKGGHASTP--HLGVN-------AIVAAARLILALQDIVSR-NVDPLDPA  165

Query  654  VLPLTEAEKQRFADVARILLPQHPEITDRDALINSLMHRWREPSLTIHSVEVPGSSKAAT  713
            V+                                              +V          
Sbjct  166  VV----------------------------------------------TVGNITGIPGGV  179

Query  714  TTISRKAKASLSIRVVPNQEADEVAANLTMYAQEQFDKLESQNDLTVEITGKSDPWLGDP  773
              I  +A+    IR++P ++ +E+   +    +        +  + VE      P L + 
Sbjct  180  NVIPGEAELKGDIRLLPGEDLEELEERIREILEAIAAAYGVK--VEVEYVEGGAPPLVN-  236

Query  774  DNEIFATLSEAITAAW  789
            D+ + A L EA    +
Sbjct  237  DSPLVAALREAAKELF  252



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1231812120


Query= TCONS_00010925

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00017423

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00010924

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00010926

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00017424

Length=966
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40...  80.5    1e-16


>CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  This 
family includes a range of zinc metallopeptidases belonging 
to several families in the peptidase classification. Family 
M20 are Glutamate carboxypeptidases. Peptidase family M25 contains 
X-His dipeptidases.
Length=315

 Score = 80.5 bits (199),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 101/316 (32%), Gaps = 73/316 (23%)

Query  483  LFYGHYDVVSADANRTKWNTDPYQLASIDGFLYGRGVSDNKGPILAALYAAADLARQKAL  542
            L  GH DVV  +         P++  + DG LYGRG  D KG +LAAL A   L  +   
Sbjct  1    LLRGHMDVVPDEET----WGWPFKS-TEDGKLYGRGHDDMKGGLLAALEALRALKEEGLK  55

Query  543  PCDVVFLIEGEEESGSQGFHETVRQHKPEIGSVDWILLAN----SYWLDDYNPCLTYGLR  598
               V  L + +EE G  G    +     E   VD +   +    +         +  G R
Sbjct  56   KGTVKLLFQPDEEGGMGGARALIEDGLLEREKVDAVFGLHIGEPTLLEGGIAIGVVTGHR  115

Query  599  GVVHANLIVT--SDH---PDLHSGIDGSALLDEPLKDLSMLLASLVGPKGRINIPGFHDL  653
            G +   + V     H   P  H G++        +   + L+ +L     R N+      
Sbjct  116  GSLRFRVTVKGKGGHASTP--HLGVN-------AIVAAARLILALQDIVSR-NVDPLDPA  165

Query  654  VLPLTEAEKQRFADVARILLPQHPEITDRDALINSLMHRWREPSLTIHSVEVPGSSKAAT  713
            V+                                              +V          
Sbjct  166  VV----------------------------------------------TVGNITGIPGGV  179

Query  714  TTISRKAKASLSIRVVPNQEADEVAANLTMYAQEQFDKLESQNDLTVEITGKSDPWLGDP  773
              I  +A+    IR++P ++ +E+   +    +        +  + VE      P L + 
Sbjct  180  NVIPGEAELKGDIRLLPGEDLEELEERIREILEAIAAAYGVK--VEVEYVEGGAPPLVN-  236

Query  774  DNEIFATLSEAITAAW  789
            D+ + A L EA    +
Sbjct  237  DSPLVAALREAAKELF  252



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1231812120


Query= TCONS_00010927

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40...  81.6    2e-17


>CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  This 
family includes a range of zinc metallopeptidases belonging 
to several families in the peptidase classification. Family 
M20 are Glutamate carboxypeptidases. Peptidase family M25 contains 
X-His dipeptidases.
Length=315

 Score = 81.6 bits (202),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 101/316 (32%), Gaps = 73/316 (23%)

Query  72   LFYGHYDVVSADANRTKWNTDPYQLASIDGFLYGRGVSDNKGPILAALYAAADLARQKAL  131
            L  GH DVV  +         P++  + DG LYGRG  D KG +LAAL A   L  +   
Sbjct  1    LLRGHMDVVPDEET----WGWPFKS-TEDGKLYGRGHDDMKGGLLAALEALRALKEEGLK  55

Query  132  PCDVVFLIEGEEESGSQGFHETVRQHKPEIGSVDWILLAN----SYWLDDYNPCLTYGLR  187
               V  L + +EE G  G    +     E   VD +   +    +         +  G R
Sbjct  56   KGTVKLLFQPDEEGGMGGARALIEDGLLEREKVDAVFGLHIGEPTLLEGGIAIGVVTGHR  115

Query  188  GVVHANLIVT--SDH---PDLHSGIDGSALLDEPLKDLSMLLASLVGPKGRINIPGFHDL  242
            G +   + V     H   P  H G++        +   + L+ +L     R N+      
Sbjct  116  GSLRFRVTVKGKGGHASTP--HLGVN-------AIVAAARLILALQDIVSR-NVDPLDPA  165

Query  243  VLPLTEAEKQRFADVARILLPQHPEITDRDALINSLMHRWREPSLTIHSVEVPGSSKAAT  302
            V+                                              +V          
Sbjct  166  VV----------------------------------------------TVGNITGIPGGV  179

Query  303  TTISRKAKASLSIRVVPNQEADEVAANLTMYAQEQFDKLESQNDLTVEITGKSDPWLGDP  362
              I  +A+    IR++P ++ +E+   +    +        +  + VE      P L + 
Sbjct  180  NVIPGEAELKGDIRLLPGEDLEELEERIREILEAIAAAYGVK--VEVEYVEGGAPPLVN-  236

Query  363  DNEIFATLSEAITAAW  378
            D+ + A L EA    +
Sbjct  237  DSPLVAALREAAKELF  252



Lambda      K        H        a         alpha
   0.316    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 691920164


Query= TCONS_00017425

Length=966
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40...  80.5    1e-16


>CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  This 
family includes a range of zinc metallopeptidases belonging 
to several families in the peptidase classification. Family 
M20 are Glutamate carboxypeptidases. Peptidase family M25 contains 
X-His dipeptidases.
Length=315

 Score = 80.5 bits (199),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 101/316 (32%), Gaps = 73/316 (23%)

Query  483  LFYGHYDVVSADANRTKWNTDPYQLASIDGFLYGRGVSDNKGPILAALYAAADLARQKAL  542
            L  GH DVV  +         P++  + DG LYGRG  D KG +LAAL A   L  +   
Sbjct  1    LLRGHMDVVPDEET----WGWPFKS-TEDGKLYGRGHDDMKGGLLAALEALRALKEEGLK  55

Query  543  PCDVVFLIEGEEESGSQGFHETVRQHKPEIGSVDWILLAN----SYWLDDYNPCLTYGLR  598
               V  L + +EE G  G    +     E   VD +   +    +         +  G R
Sbjct  56   KGTVKLLFQPDEEGGMGGARALIEDGLLEREKVDAVFGLHIGEPTLLEGGIAIGVVTGHR  115

Query  599  GVVHANLIVT--SDH---PDLHSGIDGSALLDEPLKDLSMLLASLVGPKGRINIPGFHDL  653
            G +   + V     H   P  H G++        +   + L+ +L     R N+      
Sbjct  116  GSLRFRVTVKGKGGHASTP--HLGVN-------AIVAAARLILALQDIVSR-NVDPLDPA  165

Query  654  VLPLTEAEKQRFADVARILLPQHPEITDRDALINSLMHRWREPSLTIHSVEVPGSSKAAT  713
            V+                                              +V          
Sbjct  166  VV----------------------------------------------TVGNITGIPGGV  179

Query  714  TTISRKAKASLSIRVVPNQEADEVAANLTMYAQEQFDKLESQNDLTVEITGKSDPWLGDP  773
              I  +A+    IR++P ++ +E+   +    +        +  + VE      P L + 
Sbjct  180  NVIPGEAELKGDIRLLPGEDLEELEERIREILEAIAAAYGVK--VEVEYVEGGAPPLVN-  236

Query  774  DNEIFATLSEAITAAW  789
            D+ + A L EA    +
Sbjct  237  DSPLVAALREAAKELF  252



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0647    0.140     1.90     42.6     43.6 

Effective search space used: 1231812120


Query= TCONS_00017427

Length=728
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40...  81.2    4e-17


>CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  This 
family includes a range of zinc metallopeptidases belonging 
to several families in the peptidase classification. Family 
M20 are Glutamate carboxypeptidases. Peptidase family M25 contains 
X-His dipeptidases.
Length=315

 Score = 81.2 bits (201),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 101/316 (32%), Gaps = 73/316 (23%)

Query  245  LFYGHYDVVSADANRTKWNTDPYQLASIDGFLYGRGVSDNKGPILAALYAAADLARQKAL  304
            L  GH DVV  +         P++  + DG LYGRG  D KG +LAAL A   L  +   
Sbjct  1    LLRGHMDVVPDEET----WGWPFKS-TEDGKLYGRGHDDMKGGLLAALEALRALKEEGLK  55

Query  305  PCDVVFLIEGEEESGSQGFHETVRQHKPEIGSVDWILLAN----SYWLDDYNPCLTYGLR  360
               V  L + +EE G  G    +     E   VD +   +    +         +  G R
Sbjct  56   KGTVKLLFQPDEEGGMGGARALIEDGLLEREKVDAVFGLHIGEPTLLEGGIAIGVVTGHR  115

Query  361  GVVHANLIVT--SDH---PDLHSGIDGSALLDEPLKDLSMLLASLVGPKGRINIPGFHDL  415
            G +   + V     H   P  H G++        +   + L+ +L     R N+      
Sbjct  116  GSLRFRVTVKGKGGHASTP--HLGVN-------AIVAAARLILALQDIVSR-NVDPLDPA  165

Query  416  VLPLTEAEKQRFADVARILLPQHPEITDRDALINSLMHRWREPSLTIHSVEVPGSSKAAT  475
            V+                                              +V          
Sbjct  166  VV----------------------------------------------TVGNITGIPGGV  179

Query  476  TTISRKAKASLSIRVVPNQEADEVAANLTMYAQEQFDKLESQNDLTVEITGKSDPWLGDP  535
              I  +A+    IR++P ++ +E+   +    +        +  + VE      P L + 
Sbjct  180  NVIPGEAELKGDIRLLPGEDLEELEERIREILEAIAAAYGVK--VEVEYVEGGAPPLVN-  236

Query  536  DNEIFATLSEAITAAW  551
            D+ + A L EA    +
Sbjct  237  DSPLVAALREAAKELF  252



Lambda      K        H        a         alpha
   0.315    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 922566368


Query= TCONS_00017426

Length=728
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40...  81.2    4e-17


>CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  This 
family includes a range of zinc metallopeptidases belonging 
to several families in the peptidase classification. Family 
M20 are Glutamate carboxypeptidases. Peptidase family M25 contains 
X-His dipeptidases.
Length=315

 Score = 81.2 bits (201),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 101/316 (32%), Gaps = 73/316 (23%)

Query  245  LFYGHYDVVSADANRTKWNTDPYQLASIDGFLYGRGVSDNKGPILAALYAAADLARQKAL  304
            L  GH DVV  +         P++  + DG LYGRG  D KG +LAAL A   L  +   
Sbjct  1    LLRGHMDVVPDEET----WGWPFKS-TEDGKLYGRGHDDMKGGLLAALEALRALKEEGLK  55

Query  305  PCDVVFLIEGEEESGSQGFHETVRQHKPEIGSVDWILLAN----SYWLDDYNPCLTYGLR  360
               V  L + +EE G  G    +     E   VD +   +    +         +  G R
Sbjct  56   KGTVKLLFQPDEEGGMGGARALIEDGLLEREKVDAVFGLHIGEPTLLEGGIAIGVVTGHR  115

Query  361  GVVHANLIVT--SDH---PDLHSGIDGSALLDEPLKDLSMLLASLVGPKGRINIPGFHDL  415
            G +   + V     H   P  H G++        +   + L+ +L     R N+      
Sbjct  116  GSLRFRVTVKGKGGHASTP--HLGVN-------AIVAAARLILALQDIVSR-NVDPLDPA  165

Query  416  VLPLTEAEKQRFADVARILLPQHPEITDRDALINSLMHRWREPSLTIHSVEVPGSSKAAT  475
            V+                                              +V          
Sbjct  166  VV----------------------------------------------TVGNITGIPGGV  179

Query  476  TTISRKAKASLSIRVVPNQEADEVAANLTMYAQEQFDKLESQNDLTVEITGKSDPWLGDP  535
              I  +A+    IR++P ++ +E+   +    +        +  + VE      P L + 
Sbjct  180  NVIPGEAELKGDIRLLPGEDLEELEERIREILEAIAAAYGVK--VEVEYVEGGAPPLVN-  236

Query  536  DNEIFATLSEAITAAW  551
            D+ + A L EA    +
Sbjct  237  DSPLVAALREAAKELF  252



Lambda      K        H        a         alpha
   0.315    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 922566368


Query= TCONS_00010929

Length=966
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40...  80.1    1e-16


>CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  This 
family includes a range of zinc metallopeptidases belonging 
to several families in the peptidase classification. Family 
M20 are Glutamate carboxypeptidases. Peptidase family M25 contains 
X-His dipeptidases.
Length=315

 Score = 80.1 bits (198),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 101/316 (32%), Gaps = 73/316 (23%)

Query  483  LFYGHYDVVSADANRTKWNTDPYQLASIDGFLYGRGVSDNKGPILAALYAAADLARQKAL  542
            L  GH DVV  +         P++  + DG LYGRG  D KG +LAAL A   L  +   
Sbjct  1    LLRGHMDVVPDEET----WGWPFKS-TEDGKLYGRGHDDMKGGLLAALEALRALKEEGLK  55

Query  543  PCDVVFLIEGEEESGSQGFHETVRQHKPEIGSVDWILLAN----SYWLDDYNPCLTYGLR  598
               V  L + +EE G  G    +     E   VD +   +    +         +  G R
Sbjct  56   KGTVKLLFQPDEEGGMGGARALIEDGLLEREKVDAVFGLHIGEPTLLEGGIAIGVVTGHR  115

Query  599  GVVHANLIVT--SDH---PDLHSGIDGSALLDEPLKDLSMLLASLVGPKGRINIPGFHDL  653
            G +   + V     H   P  H G++        +   + L+ +L     R N+      
Sbjct  116  GSLRFRVTVKGKGGHASTP--HLGVN-------AIVAAARLILALQDIVSR-NVDPLDPA  165

Query  654  VLPLTEAEKQRFADVARILLPQHPEITDRDALINSLMHRWREPSLTIHSVEVPGSSKAAT  713
            V+                                              +V          
Sbjct  166  VV----------------------------------------------TVGNITGIPGGV  179

Query  714  TTISRKAKASLSIRVVPNQEADEVAANLTMYAQEQFDKLESQNDLTVEITGKSDPWLGDP  773
              I  +A+    IR++P ++ +E+   +    +        +  + VE      P L + 
Sbjct  180  NVIPGEAELKGDIRLLPGEDLEELEERIREILEAIAAAYGVK--VEVEYVEGGAPPLVN-  236

Query  774  DNEIFATLSEAITAAW  789
            D+ + A L EA    +
Sbjct  237  DSPLVAALREAAKELF  252



Lambda      K        H        a         alpha
   0.316    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1231812120


Query= TCONS_00017428

Length=728
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40...  81.2    4e-17


>CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  This 
family includes a range of zinc metallopeptidases belonging 
to several families in the peptidase classification. Family 
M20 are Glutamate carboxypeptidases. Peptidase family M25 contains 
X-His dipeptidases.
Length=315

 Score = 81.2 bits (201),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 101/316 (32%), Gaps = 73/316 (23%)

Query  245  LFYGHYDVVSADANRTKWNTDPYQLASIDGFLYGRGVSDNKGPILAALYAAADLARQKAL  304
            L  GH DVV  +         P++  + DG LYGRG  D KG +LAAL A   L  +   
Sbjct  1    LLRGHMDVVPDEET----WGWPFKS-TEDGKLYGRGHDDMKGGLLAALEALRALKEEGLK  55

Query  305  PCDVVFLIEGEEESGSQGFHETVRQHKPEIGSVDWILLAN----SYWLDDYNPCLTYGLR  360
               V  L + +EE G  G    +     E   VD +   +    +         +  G R
Sbjct  56   KGTVKLLFQPDEEGGMGGARALIEDGLLEREKVDAVFGLHIGEPTLLEGGIAIGVVTGHR  115

Query  361  GVVHANLIVT--SDH---PDLHSGIDGSALLDEPLKDLSMLLASLVGPKGRINIPGFHDL  415
            G +   + V     H   P  H G++        +   + L+ +L     R N+      
Sbjct  116  GSLRFRVTVKGKGGHASTP--HLGVN-------AIVAAARLILALQDIVSR-NVDPLDPA  165

Query  416  VLPLTEAEKQRFADVARILLPQHPEITDRDALINSLMHRWREPSLTIHSVEVPGSSKAAT  475
            V+                                              +V          
Sbjct  166  VV----------------------------------------------TVGNITGIPGGV  179

Query  476  TTISRKAKASLSIRVVPNQEADEVAANLTMYAQEQFDKLESQNDLTVEITGKSDPWLGDP  535
              I  +A+    IR++P ++ +E+   +    +        +  + VE      P L + 
Sbjct  180  NVIPGEAELKGDIRLLPGEDLEELEERIREILEAIAAAYGVK--VEVEYVEGGAPPLVN-  236

Query  536  DNEIFATLSEAITAAW  551
            D+ + A L EA    +
Sbjct  237  DSPLVAALREAAKELF  252



Lambda      K        H        a         alpha
   0.315    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 922566368


Query= TCONS_00010930

Length=966
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40...  80.5    1e-16


>CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  This 
family includes a range of zinc metallopeptidases belonging 
to several families in the peptidase classification. Family 
M20 are Glutamate carboxypeptidases. Peptidase family M25 contains 
X-His dipeptidases.
Length=315

 Score = 80.5 bits (199),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 101/316 (32%), Gaps = 73/316 (23%)

Query  483  LFYGHYDVVSADANRTKWNTDPYQLASIDGFLYGRGVSDNKGPILAALYAAADLARQKAL  542
            L  GH DVV  +         P++  + DG LYGRG  D KG +LAAL A   L  +   
Sbjct  1    LLRGHMDVVPDEET----WGWPFKS-TEDGKLYGRGHDDMKGGLLAALEALRALKEEGLK  55

Query  543  PCDVVFLIEGEEESGSQGFHETVRQHKPEIGSVDWILLAN----SYWLDDYNPCLTYGLR  598
               V  L + +EE G  G    +     E   VD +   +    +         +  G R
Sbjct  56   KGTVKLLFQPDEEGGMGGARALIEDGLLEREKVDAVFGLHIGEPTLLEGGIAIGVVTGHR  115

Query  599  GVVHANLIVT--SDH---PDLHSGIDGSALLDEPLKDLSMLLASLVGPKGRINIPGFHDL  653
            G +   + V     H   P  H G++        +   + L+ +L     R N+      
Sbjct  116  GSLRFRVTVKGKGGHASTP--HLGVN-------AIVAAARLILALQDIVSR-NVDPLDPA  165

Query  654  VLPLTEAEKQRFADVARILLPQHPEITDRDALINSLMHRWREPSLTIHSVEVPGSSKAAT  713
            V+                                              +V          
Sbjct  166  VV----------------------------------------------TVGNITGIPGGV  179

Query  714  TTISRKAKASLSIRVVPNQEADEVAANLTMYAQEQFDKLESQNDLTVEITGKSDPWLGDP  773
              I  +A+    IR++P ++ +E+   +    +        +  + VE      P L + 
Sbjct  180  NVIPGEAELKGDIRLLPGEDLEELEERIREILEAIAAAYGVK--VEVEYVEGGAPPLVN-  236

Query  774  DNEIFATLSEAITAAW  789
            D+ + A L EA    +
Sbjct  237  DSPLVAALREAAKELF  252



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1231812120


Query= TCONS_00010931

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40...  81.6    2e-17


>CDD:460247 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  This 
family includes a range of zinc metallopeptidases belonging 
to several families in the peptidase classification. Family 
M20 are Glutamate carboxypeptidases. Peptidase family M25 contains 
X-His dipeptidases.
Length=315

 Score = 81.6 bits (202),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 101/316 (32%), Gaps = 73/316 (23%)

Query  72   LFYGHYDVVSADANRTKWNTDPYQLASIDGFLYGRGVSDNKGPILAALYAAADLARQKAL  131
            L  GH DVV  +         P++  + DG LYGRG  D KG +LAAL A   L  +   
Sbjct  1    LLRGHMDVVPDEET----WGWPFKS-TEDGKLYGRGHDDMKGGLLAALEALRALKEEGLK  55

Query  132  PCDVVFLIEGEEESGSQGFHETVRQHKPEIGSVDWILLAN----SYWLDDYNPCLTYGLR  187
               V  L + +EE G  G    +     E   VD +   +    +         +  G R
Sbjct  56   KGTVKLLFQPDEEGGMGGARALIEDGLLEREKVDAVFGLHIGEPTLLEGGIAIGVVTGHR  115

Query  188  GVVHANLIVT--SDH---PDLHSGIDGSALLDEPLKDLSMLLASLVGPKGRINIPGFHDL  242
            G +   + V     H   P  H G++        +   + L+ +L     R N+      
Sbjct  116  GSLRFRVTVKGKGGHASTP--HLGVN-------AIVAAARLILALQDIVSR-NVDPLDPA  165

Query  243  VLPLTEAEKQRFADVARILLPQHPEITDRDALINSLMHRWREPSLTIHSVEVPGSSKAAT  302
            V+                                              +V          
Sbjct  166  VV----------------------------------------------TVGNITGIPGGV  179

Query  303  TTISRKAKASLSIRVVPNQEADEVAANLTMYAQEQFDKLESQNDLTVEITGKSDPWLGDP  362
              I  +A+    IR++P ++ +E+   +    +        +  + VE      P L + 
Sbjct  180  NVIPGEAELKGDIRLLPGEDLEELEERIREILEAIAAAYGVK--VEVEYVEGGAPPLVN-  236

Query  363  DNEIFATLSEAITAAW  378
            D+ + A L EA    +
Sbjct  237  DSPLVAALREAAKELF  252



Lambda      K        H        a         alpha
   0.316    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 691920164


Query= TCONS_00010934

Length=1034
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398815 pfam05346, DUF747, Eukaryotic membrane protein family....  466     1e-157


>CDD:398815 pfam05346, DUF747, Eukaryotic membrane protein family.  This 
family is a family of eukaryotic membrane proteins. It was previously 
annotated as including a putative receptor for human 
cytomegalovirus gH but this has has since been disputed. 
Analysis of the mouse Tapt1 protein (transmembrane anterior 
posterior transformation 1) has shown it to be involved in patterning 
of the vertebrate axial skeleton.
Length=311

 Score = 466 bits (1201),  Expect = 1e-157, Method: Composition-based stats.
 Identities = 174/340 (51%), Positives = 218/340 (64%), Gaps = 65/340 (19%)

Query  514  LLPDDKADILKGLLMIATCCVLMYFDASRMYHWIRGQAAIKLYVIYNVLEVSDRLLAAIG  573
            L P +K D+LKGLL++ +C +L Y D SR+YH+IRGQ+ IKLYVIYNVLEV+D+LL++ G
Sbjct  1    LSPAEKCDLLKGLLILISCIILSYLDTSRLYHYIRGQSVIKLYVIYNVLEVADKLLSSFG  60

Query  574  QDVLECLFSREALERRPDGRSKVFRPFGLFLLALTYTVLHATSLFYQVMTLNVAVNSYSN  633
            QD+L+ LFS          +SK+ RP   F+LAL Y VLH+  L YQV+TLNVA+NSYSN
Sbjct  61   QDILDALFSTA-----TPRKSKILRPILHFILALIYVVLHSLVLLYQVITLNVAINSYSN  115

Query  634  ALITLLLSNQFVEIKSTVFKKFEKENLFQLTCADVVERFQLWLMLTIIASRNIVETGAFN  693
            AL+TLLLSNQFVEIKS+VFKKFEKENLFQ+TCADVVERFQL+L L IIA RN+VE     
Sbjct  116  ALLTLLLSNQFVEIKSSVFKKFEKENLFQITCADVVERFQLFLFLLIIALRNLVE-----  170

Query  694  FVGTLSSSLSSRSTSTNSTPLSTPPRSSSSILPQSFTFFPSSLISSFSHVNSFLPTLAQV  753
                                                             V+S       +
Sbjct  171  -------------------------------------------------VSSSNDWFGTL  181

Query  754  LGPFLVVLGSEMLVDWLKHAYINKFNNTRPAIYGRFLDILAKDYYTN----AFGDQN--L  807
            LGP L+VLGSE+LVDWLKHA+I KFNN RP++Y RFLD+L KDY ++    AF DQ+  +
Sbjct  182  LGPLLLVLGSEVLVDWLKHAFITKFNNIRPSVYRRFLDVLCKDYLSSRQKNAFVDQSHKV  241

Query  808  TKRLGLPVIPLSCLFFRVSVQTYQMFLAALLPHQPSSTAV  847
            T+RLG P +PL+CLF R+  QTY M L+  LP     T +
Sbjct  242  TRRLGFPPLPLACLFIRMLPQTYHMLLSTSLPLISLLTGL  281



Lambda      K        H        a         alpha
   0.317    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1328091688


Query= TCONS_00010932

Length=1034
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398815 pfam05346, DUF747, Eukaryotic membrane protein family....  466     1e-157


>CDD:398815 pfam05346, DUF747, Eukaryotic membrane protein family.  This 
family is a family of eukaryotic membrane proteins. It was previously 
annotated as including a putative receptor for human 
cytomegalovirus gH but this has has since been disputed. 
Analysis of the mouse Tapt1 protein (transmembrane anterior 
posterior transformation 1) has shown it to be involved in patterning 
of the vertebrate axial skeleton.
Length=311

 Score = 466 bits (1201),  Expect = 1e-157, Method: Composition-based stats.
 Identities = 174/340 (51%), Positives = 218/340 (64%), Gaps = 65/340 (19%)

Query  514  LLPDDKADILKGLLMIATCCVLMYFDASRMYHWIRGQAAIKLYVIYNVLEVSDRLLAAIG  573
            L P +K D+LKGLL++ +C +L Y D SR+YH+IRGQ+ IKLYVIYNVLEV+D+LL++ G
Sbjct  1    LSPAEKCDLLKGLLILISCIILSYLDTSRLYHYIRGQSVIKLYVIYNVLEVADKLLSSFG  60

Query  574  QDVLECLFSREALERRPDGRSKVFRPFGLFLLALTYTVLHATSLFYQVMTLNVAVNSYSN  633
            QD+L+ LFS          +SK+ RP   F+LAL Y VLH+  L YQV+TLNVA+NSYSN
Sbjct  61   QDILDALFSTA-----TPRKSKILRPILHFILALIYVVLHSLVLLYQVITLNVAINSYSN  115

Query  634  ALITLLLSNQFVEIKSTVFKKFEKENLFQLTCADVVERFQLWLMLTIIASRNIVETGAFN  693
            AL+TLLLSNQFVEIKS+VFKKFEKENLFQ+TCADVVERFQL+L L IIA RN+VE     
Sbjct  116  ALLTLLLSNQFVEIKSSVFKKFEKENLFQITCADVVERFQLFLFLLIIALRNLVE-----  170

Query  694  FVGTLSSSLSSRSTSTNSTPLSTPPRSSSSILPQSFTFFPSSLISSFSHVNSFLPTLAQV  753
                                                             V+S       +
Sbjct  171  -------------------------------------------------VSSSNDWFGTL  181

Query  754  LGPFLVVLGSEMLVDWLKHAYINKFNNTRPAIYGRFLDILAKDYYTN----AFGDQN--L  807
            LGP L+VLGSE+LVDWLKHA+I KFNN RP++Y RFLD+L KDY ++    AF DQ+  +
Sbjct  182  LGPLLLVLGSEVLVDWLKHAFITKFNNIRPSVYRRFLDVLCKDYLSSRQKNAFVDQSHKV  241

Query  808  TKRLGLPVIPLSCLFFRVSVQTYQMFLAALLPHQPSSTAV  847
            T+RLG P +PL+CLF R+  QTY M L+  LP     T +
Sbjct  242  TRRLGFPPLPLACLFIRMLPQTYHMLLSTSLPLISLLTGL  281



Lambda      K        H        a         alpha
   0.317    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1328091688


Query= TCONS_00010933

Length=1034
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398815 pfam05346, DUF747, Eukaryotic membrane protein family....  466     1e-157


>CDD:398815 pfam05346, DUF747, Eukaryotic membrane protein family.  This 
family is a family of eukaryotic membrane proteins. It was previously 
annotated as including a putative receptor for human 
cytomegalovirus gH but this has has since been disputed. 
Analysis of the mouse Tapt1 protein (transmembrane anterior 
posterior transformation 1) has shown it to be involved in patterning 
of the vertebrate axial skeleton.
Length=311

 Score = 466 bits (1201),  Expect = 1e-157, Method: Composition-based stats.
 Identities = 174/340 (51%), Positives = 218/340 (64%), Gaps = 65/340 (19%)

Query  514  LLPDDKADILKGLLMIATCCVLMYFDASRMYHWIRGQAAIKLYVIYNVLEVSDRLLAAIG  573
            L P +K D+LKGLL++ +C +L Y D SR+YH+IRGQ+ IKLYVIYNVLEV+D+LL++ G
Sbjct  1    LSPAEKCDLLKGLLILISCIILSYLDTSRLYHYIRGQSVIKLYVIYNVLEVADKLLSSFG  60

Query  574  QDVLECLFSREALERRPDGRSKVFRPFGLFLLALTYTVLHATSLFYQVMTLNVAVNSYSN  633
            QD+L+ LFS          +SK+ RP   F+LAL Y VLH+  L YQV+TLNVA+NSYSN
Sbjct  61   QDILDALFSTA-----TPRKSKILRPILHFILALIYVVLHSLVLLYQVITLNVAINSYSN  115

Query  634  ALITLLLSNQFVEIKSTVFKKFEKENLFQLTCADVVERFQLWLMLTIIASRNIVETGAFN  693
            AL+TLLLSNQFVEIKS+VFKKFEKENLFQ+TCADVVERFQL+L L IIA RN+VE     
Sbjct  116  ALLTLLLSNQFVEIKSSVFKKFEKENLFQITCADVVERFQLFLFLLIIALRNLVE-----  170

Query  694  FVGTLSSSLSSRSTSTNSTPLSTPPRSSSSILPQSFTFFPSSLISSFSHVNSFLPTLAQV  753
                                                             V+S       +
Sbjct  171  -------------------------------------------------VSSSNDWFGTL  181

Query  754  LGPFLVVLGSEMLVDWLKHAYINKFNNTRPAIYGRFLDILAKDYYTN----AFGDQN--L  807
            LGP L+VLGSE+LVDWLKHA+I KFNN RP++Y RFLD+L KDY ++    AF DQ+  +
Sbjct  182  LGPLLLVLGSEVLVDWLKHAFITKFNNIRPSVYRRFLDVLCKDYLSSRQKNAFVDQSHKV  241

Query  808  TKRLGLPVIPLSCLFFRVSVQTYQMFLAALLPHQPSSTAV  847
            T+RLG P +PL+CLF R+  QTY M L+  LP     T +
Sbjct  242  TRRLGFPPLPLACLFIRMLPQTYHMLLSTSLPLISLLTGL  281



Lambda      K        H        a         alpha
   0.317    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1328091688


Query= TCONS_00010936

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.499    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00010937

Length=879


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1125442976


Query= TCONS_00010938

Length=754


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 960400320


Query= TCONS_00017429

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00010939

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00010940

Length=729
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460260 pfam01595, DUF21, Domain of unknown function DUF21. Th...  113     2e-29


>CDD:460260 pfam01595, DUF21, Domain of unknown function DUF21.  This transmembrane 
region has no known function. Many of the sequences 
in this family are annotated as hemolysins, however this 
is due to a similarity to Brachyspira hyodysenteriae hemolysin 
C that does not contain this domain. This domain is found 
in the N-terminus of the proteins adjacent to two intracellular 
CBS domains pfam00571.
Length=183

 Score = 113 bits (285),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 87/187 (47%), Gaps = 22/187 (12%)

Query  73   VAAALVLSGGAFAGLTIALMGQDEVHLQVIKSSGDKSEQKNAASVLRLLKKGKHWVLVTL  132
            +A  L+L    F+    AL+      L+ +   G+K     A  +L+LL      +L TL
Sbjct  2    IALLLLLLSAFFSAAETALVSLRRSRLEELAEKGNKG----AKRLLKLLANP-DRLLSTL  56

Query  133  LLSNVITNETLPIILDRSLGGGWPAVLGS----------TVLIVIFGEIVPQSICVRYGL  182
            L+ N + N  L  +   +L     A LG+          T+LI++FGEI+P+++ +RY  
Sbjct  57   LIGNTLANILLGALAT-ALFAELLAPLGALGVAIATVLVTLLILVFGEILPKTLALRYAE  115

Query  183  PIGAWMAPCVLVLMYIMSPVAWPVAKLLDRLL------GEDHGTIYKKAGLKTLVTLHKT  236
             I   +AP +LVL  ++ P+ W + KL + +L      G +      +  L++LV     
Sbjct  116  RIALRVAPPLLVLSKLLYPLVWLLNKLANLILRLFGVKGGESEPAVTEEELRSLVEESAE  175

Query  237  LGEAGEQ  243
             G   E+
Sbjct  176  EGVIEEE  182



Lambda      K        H        a         alpha
   0.315    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 924021520


Query= TCONS_00017431

Length=638
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460260 pfam01595, DUF21, Domain of unknown function DUF21. Th...  100     6e-25


>CDD:460260 pfam01595, DUF21, Domain of unknown function DUF21.  This transmembrane 
region has no known function. Many of the sequences 
in this family are annotated as hemolysins, however this 
is due to a similarity to Brachyspira hyodysenteriae hemolysin 
C that does not contain this domain. This domain is found 
in the N-terminus of the proteins adjacent to two intracellular 
CBS domains pfam00571.
Length=183

 Score = 100 bits (251),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 73/153 (48%), Gaps = 18/153 (12%)

Query  16   DKSEQKNAASVLRLLKKGKHWVLVTLLLSNVITNETLPIILDRSLGGGWPAVLGS-----  70
             +   K A  +L+LL      +L TLL+ N + N  L  +   +L     A LG+     
Sbjct  32   AEKGNKGAKRLLKLLANP-DRLLSTLLIGNTLANILLGALAT-ALFAELLAPLGALGVAI  89

Query  71   -----TVLIVIFGEIVPQSICVRYGLPIGAWMAPCVLVLMYIMSPVAWPVAKLLDRLL--  123
                 T+LI++FGEI+P+++ +RY   I   +AP +LVL  ++ P+ W + KL + +L  
Sbjct  90   ATVLVTLLILVFGEILPKTLALRYAERIALRVAPPLLVLSKLLYPLVWLLNKLANLILRL  149

Query  124  ----GEDHGTIYKKAGLKTLVTLHKTLGEAGEQ  152
                G +      +  L++LV      G   E+
Sbjct  150  FGVKGGESEPAVTEEELRSLVEESAEEGVIEEE  182



Lambda      K        H        a         alpha
   0.313    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 803760550


Query= TCONS_00010941

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463690 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies)...  159     4e-49


>CDD:463690 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies).  This 
family contains two copies of a C2H2-like zinc finger domain.
Length=98

 Score = 159 bits (405),  Expect = 4e-49, Method: Composition-based stats.
 Identities = 56/98 (57%), Positives = 72/98 (73%), Gaps = 0/98 (0%)

Query  132  CLFCSHKASDPQENTEHMRRSHGMFIPEKDYLVNLEGLIHYLYRKINENSECLYCHAIRN  191
            CLFC H +S  +EN EHM +SHG FIPE++YLV+LEGL++YL  KI   +ECLYC     
Sbjct  1    CLFCGHTSSTVEENLEHMFKSHGFFIPEREYLVDLEGLLNYLREKIGLGNECLYCGKQFK  60

Query  192  SPAGIRTHMRDKGHCMIAFETEEEQIEIGQYYDFRSTY  229
            S   +R HMRDKGHC I +E+EEE +EI ++YDF S+Y
Sbjct  61   SLEALRQHMRDKGHCKIPYESEEEWLEIAEFYDFSSSY  98



Lambda      K        H        a         alpha
   0.310    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00010942

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463690 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies)...  159     4e-49


>CDD:463690 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies).  This 
family contains two copies of a C2H2-like zinc finger domain.
Length=98

 Score = 159 bits (405),  Expect = 4e-49, Method: Composition-based stats.
 Identities = 56/98 (57%), Positives = 72/98 (73%), Gaps = 0/98 (0%)

Query  132  CLFCSHKASDPQENTEHMRRSHGMFIPEKDYLVNLEGLIHYLYRKINENSECLYCHAIRN  191
            CLFC H +S  +EN EHM +SHG FIPE++YLV+LEGL++YL  KI   +ECLYC     
Sbjct  1    CLFCGHTSSTVEENLEHMFKSHGFFIPEREYLVDLEGLLNYLREKIGLGNECLYCGKQFK  60

Query  192  SPAGIRTHMRDKGHCMIAFETEEEQIEIGQYYDFRSTY  229
            S   +R HMRDKGHC I +E+EEE +EI ++YDF S+Y
Sbjct  61   SLEALRQHMRDKGHCKIPYESEEEWLEIAEFYDFSSSY  98



Lambda      K        H        a         alpha
   0.310    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00017432

Length=1120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  286     7e-89


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 286 bits (735),  Expect = 7e-89, Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 188/377 (50%), Gaps = 83/377 (22%)

Query  752   LMAEALNPSYGMFTM-DARTRISWFQPCS-----LEPLYKFELLGLLMSLAIYNGLTLPV  805
             L  E  +P+YG+F       R  WF P S     LE L  F+ LG L+  AIYNG+ L +
Sbjct  3     LSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILLDL  62

Query  806   NFPVAFYRKLLGLKVKHLEHIRDGWPELTKGLELLLSWQDGDVGDVFMRTYEFTFEVFGA  865
              FP  FY+KLLG  +  LE +    PEL K L+ LL+  + D  D+ +    FT  VFG 
Sbjct  63    PFPPFFYKKLLGEPL-TLEDLESIDPELYKSLKSLLNMDNDDDEDLGLT---FTIPVFGE  118

Query  866   VETVDMEKVGRDAVWPLRARDRSKSSELATNWSELSQHADPADLSPPCSMSADHVDFLEC  925
              +T+++   GR+                                                
Sbjct  119   SKTIELIPNGRNIP----------------------------------------------  132

Query  926   GSSHRSKSERLDYCVPTPPVEEASLVTNDNRAQFVKDYIFWLTDKSIRPQFEAFARGFYT  985
                                      VTN+N+ ++++ Y+ +  +KSI PQ EAF +GFY+
Sbjct  133   -------------------------VTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYS  167

Query  986   CLDRAALSIFTPEAFKTVVEGIQEIDLGELERHARYEGGFGPHHRVIQDFWSIVKSFSQE  1045
              + + ALS+FTPE  + ++ G  EID+ +L+++  Y+GG+  +   IQ FW I++ FS E
Sbjct  168   VIPKEALSLFTPEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPE  227

Query  1046  KKAQLLEFVTASDRVPVNGIASI-MFVIQRNGV-GDARLPTSLTCFGRLLLPEYSSKSVL  1103
             ++   L+FVT S R+PV G  S+  F I R G   D RLPT+ TCF RL LP+YSSK +L
Sbjct  228   QRRLFLKFVTGSSRLPVGGFKSLPKFTIVRKGGDDDDRLPTAHTCFNRLKLPDYSSKEIL  287

Query  1104  EEKLNKALENARGFGVA  1120
             +EKL  A+E   GFG++
Sbjct  288   KEKLLIAIEEGEGFGLS  304



Lambda      K        H        a         alpha
   0.319    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1428351474


Query= TCONS_00010944

Length=1310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  226     5e-67
CDD:465173 pfam16558, AZUL, Amino-terminal Zinc-binding domain of...  100     2e-26


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 226 bits (579),  Expect = 5e-67, Method: Composition-based stats.
 Identities = 105/335 (31%), Positives = 157/335 (47%), Gaps = 82/335 (24%)

Query  969   LMAEALNPSYGMFTM-DARTRISWFQPCS-----LEPLYKFELLGLLMSLAIYNGLTLPV  1022
             L  E  +P+YG+F       R  WF P S     LE L  F+ LG L+  AIYNG+ L +
Sbjct  3     LSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILLDL  62

Query  1023  NFPVAFYRKLLGLKVKHLEHIRDGWPELTKGLELLLSWQDGDVGDVFMRTYEFTFEVFGA  1082
              FP  FY+KLLG  +  LE +    PEL K L+ LL+  + D  D+ +    FT  VFG 
Sbjct  63    PFPPFFYKKLLGEPL-TLEDLESIDPELYKSLKSLLNMDNDDDEDLGLT---FTIPVFGE  118

Query  1083  VETVDMEKVGRDAVWPLRARDRSKSSELATNWSELSQHADPADLSPPCSMSADHVDFLEC  1142
              +T+++   GR+                                                
Sbjct  119   SKTIELIPNGRNIP----------------------------------------------  132

Query  1143  GSSHRSKSERLDYCVPTPPVEEASLVTNDNRAQFVKDYIFWLTDKSIRPQFEAFARGFYT  1202
                                      VTN+N+ ++++ Y+ +  +KSI PQ EAF +GFY+
Sbjct  133   -------------------------VTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYS  167

Query  1203  CLDRAALSIFTPEAFKTVVEGIQEIDLGELERHARYEGGFGPHHRVIQDFWSIVKSFSQE  1262
              + + ALS+FTPE  + ++ G  EID+ +L+++  Y+GG+  +   IQ FW I++ FS E
Sbjct  168   VIPKEALSLFTPEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPE  227

Query  1263  KKAQLLEFVTASDRVPVNGIASI-MFVIQRNGVGD  1296
             ++   L+FVT S R+PV G  S+  F I R G  D
Sbjct  228   QRRLFLKFVTGSSRLPVGGFKSLPKFTIVRKGGDD  262


>CDD:465173 pfam16558, AZUL, Amino-terminal Zinc-binding domain of ubiquitin 
ligase E3A.  The AZUL or amino-terminal zinc-binding domain 
of ubiquitin E3a ligase is found in eukaryotes, and is an 
unusual zinc-finger domain. The final cysteine is usually 
mutated in Angelman syndrome patients. It is likely that AZUL 
plays a role in Ube3A substrate-recognition.
Length=59

 Score = 100 bits (252),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 39/64 (61%), Gaps = 5/64 (8%)

Query  59   FNLLVRKYKNQLLHGCQDPDCRTPTCASYRRRVSEGPYRRYTELSARTLACYLASLDNPE  118
            F LLV +Y  QL +GC  P+C  PTCAS R      P RR +  SA  LA YLAS D PE
Sbjct  1    FKLLVERYFYQLTYGCGSPNCTNPTCASCRDF----PVRRLSPNSAAALALYLASQD-PE  55

Query  119  SGLC  122
            +GLC
Sbjct  56   AGLC  59



Lambda      K        H        a         alpha
   0.318    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1668439200


Query= TCONS_00010943

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  225     6e-67


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 225 bits (577),  Expect = 6e-67, Method: Composition-based stats.
 Identities = 105/335 (31%), Positives = 157/335 (47%), Gaps = 82/335 (24%)

Query  752   LMAEALNPSYGMFTM-DARTRISWFQPCS-----LEPLYKFELLGLLMSLAIYNGLTLPV  805
             L  E  +P+YG+F       R  WF P S     LE L  F+ LG L+  AIYNG+ L +
Sbjct  3     LSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILLDL  62

Query  806   NFPVAFYRKLLGLKVKHLEHIRDGWPELTKGLELLLSWQDGDVGDVFMRTYEFTFEVFGA  865
              FP  FY+KLLG  +  LE +    PEL K L+ LL+  + D  D+ +    FT  VFG 
Sbjct  63    PFPPFFYKKLLGEPL-TLEDLESIDPELYKSLKSLLNMDNDDDEDLGLT---FTIPVFGE  118

Query  866   VETVDMEKVGRDAVWPLRARDRSKSSELATNWSELSQHADPADLSPPCSMSADHVDFLEC  925
              +T+++   GR+                                                
Sbjct  119   SKTIELIPNGRNIP----------------------------------------------  132

Query  926   GSSHRSKSERLDYCVPTPPVEEASLVTNDNRAQFVKDYIFWLTDKSIRPQFEAFARGFYT  985
                                      VTN+N+ ++++ Y+ +  +KSI PQ EAF +GFY+
Sbjct  133   -------------------------VTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYS  167

Query  986   CLDRAALSIFTPEAFKTVVEGIQEIDLGELERHARYEGGFGPHHRVIQDFWSIVKSFSQE  1045
              + + ALS+FTPE  + ++ G  EID+ +L+++  Y+GG+  +   IQ FW I++ FS E
Sbjct  168   VIPKEALSLFTPEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPE  227

Query  1046  KKAQLLEFVTASDRVPVNGIASI-MFVIQRNGVGD  1079
             ++   L+FVT S R+PV G  S+  F I R G  D
Sbjct  228   QRRLFLKFVTGSSRLPVGGFKSLPKFTIVRKGGDD  262



Lambda      K        H        a         alpha
   0.319    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390653048


Query= TCONS_00017433

Length=1120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  286     7e-89


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 286 bits (735),  Expect = 7e-89, Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 188/377 (50%), Gaps = 83/377 (22%)

Query  752   LMAEALNPSYGMFTM-DARTRISWFQPCS-----LEPLYKFELLGLLMSLAIYNGLTLPV  805
             L  E  +P+YG+F       R  WF P S     LE L  F+ LG L+  AIYNG+ L +
Sbjct  3     LSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILLDL  62

Query  806   NFPVAFYRKLLGLKVKHLEHIRDGWPELTKGLELLLSWQDGDVGDVFMRTYEFTFEVFGA  865
              FP  FY+KLLG  +  LE +    PEL K L+ LL+  + D  D+ +    FT  VFG 
Sbjct  63    PFPPFFYKKLLGEPL-TLEDLESIDPELYKSLKSLLNMDNDDDEDLGLT---FTIPVFGE  118

Query  866   VETVDMEKVGRDAVWPLRARDRSKSSELATNWSELSQHADPADLSPPCSMSADHVDFLEC  925
              +T+++   GR+                                                
Sbjct  119   SKTIELIPNGRNIP----------------------------------------------  132

Query  926   GSSHRSKSERLDYCVPTPPVEEASLVTNDNRAQFVKDYIFWLTDKSIRPQFEAFARGFYT  985
                                      VTN+N+ ++++ Y+ +  +KSI PQ EAF +GFY+
Sbjct  133   -------------------------VTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYS  167

Query  986   CLDRAALSIFTPEAFKTVVEGIQEIDLGELERHARYEGGFGPHHRVIQDFWSIVKSFSQE  1045
              + + ALS+FTPE  + ++ G  EID+ +L+++  Y+GG+  +   IQ FW I++ FS E
Sbjct  168   VIPKEALSLFTPEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPE  227

Query  1046  KKAQLLEFVTASDRVPVNGIASI-MFVIQRNGV-GDARLPTSLTCFGRLLLPEYSSKSVL  1103
             ++   L+FVT S R+PV G  S+  F I R G   D RLPT+ TCF RL LP+YSSK +L
Sbjct  228   QRRLFLKFVTGSSRLPVGGFKSLPKFTIVRKGGDDDDRLPTAHTCFNRLKLPDYSSKEIL  287

Query  1104  EEKLNKALENARGFGVA  1120
             +EKL  A+E   GFG++
Sbjct  288   KEKLLIAIEEGEGFGLS  304



Lambda      K        H        a         alpha
   0.319    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1428351474


Query= TCONS_00017434

Length=1120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  286     7e-89


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 286 bits (735),  Expect = 7e-89, Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 188/377 (50%), Gaps = 83/377 (22%)

Query  752   LMAEALNPSYGMFTM-DARTRISWFQPCS-----LEPLYKFELLGLLMSLAIYNGLTLPV  805
             L  E  +P+YG+F       R  WF P S     LE L  F+ LG L+  AIYNG+ L +
Sbjct  3     LSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILLDL  62

Query  806   NFPVAFYRKLLGLKVKHLEHIRDGWPELTKGLELLLSWQDGDVGDVFMRTYEFTFEVFGA  865
              FP  FY+KLLG  +  LE +    PEL K L+ LL+  + D  D+ +    FT  VFG 
Sbjct  63    PFPPFFYKKLLGEPL-TLEDLESIDPELYKSLKSLLNMDNDDDEDLGLT---FTIPVFGE  118

Query  866   VETVDMEKVGRDAVWPLRARDRSKSSELATNWSELSQHADPADLSPPCSMSADHVDFLEC  925
              +T+++   GR+                                                
Sbjct  119   SKTIELIPNGRNIP----------------------------------------------  132

Query  926   GSSHRSKSERLDYCVPTPPVEEASLVTNDNRAQFVKDYIFWLTDKSIRPQFEAFARGFYT  985
                                      VTN+N+ ++++ Y+ +  +KSI PQ EAF +GFY+
Sbjct  133   -------------------------VTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYS  167

Query  986   CLDRAALSIFTPEAFKTVVEGIQEIDLGELERHARYEGGFGPHHRVIQDFWSIVKSFSQE  1045
              + + ALS+FTPE  + ++ G  EID+ +L+++  Y+GG+  +   IQ FW I++ FS E
Sbjct  168   VIPKEALSLFTPEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPE  227

Query  1046  KKAQLLEFVTASDRVPVNGIASI-MFVIQRNGV-GDARLPTSLTCFGRLLLPEYSSKSVL  1103
             ++   L+FVT S R+PV G  S+  F I R G   D RLPT+ TCF RL LP+YSSK +L
Sbjct  228   QRRLFLKFVTGSSRLPVGGFKSLPKFTIVRKGGDDDDRLPTAHTCFNRLKLPDYSSKEIL  287

Query  1104  EEKLNKALENARGFGVA  1120
             +EKL  A+E   GFG++
Sbjct  288   KEKLLIAIEEGEGFGLS  304



Lambda      K        H        a         alpha
   0.319    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1428351474


Query= TCONS_00010945

Length=1120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  286     7e-89


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 286 bits (735),  Expect = 7e-89, Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 188/377 (50%), Gaps = 83/377 (22%)

Query  752   LMAEALNPSYGMFTM-DARTRISWFQPCS-----LEPLYKFELLGLLMSLAIYNGLTLPV  805
             L  E  +P+YG+F       R  WF P S     LE L  F+ LG L+  AIYNG+ L +
Sbjct  3     LSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILLDL  62

Query  806   NFPVAFYRKLLGLKVKHLEHIRDGWPELTKGLELLLSWQDGDVGDVFMRTYEFTFEVFGA  865
              FP  FY+KLLG  +  LE +    PEL K L+ LL+  + D  D+ +    FT  VFG 
Sbjct  63    PFPPFFYKKLLGEPL-TLEDLESIDPELYKSLKSLLNMDNDDDEDLGLT---FTIPVFGE  118

Query  866   VETVDMEKVGRDAVWPLRARDRSKSSELATNWSELSQHADPADLSPPCSMSADHVDFLEC  925
              +T+++   GR+                                                
Sbjct  119   SKTIELIPNGRNIP----------------------------------------------  132

Query  926   GSSHRSKSERLDYCVPTPPVEEASLVTNDNRAQFVKDYIFWLTDKSIRPQFEAFARGFYT  985
                                      VTN+N+ ++++ Y+ +  +KSI PQ EAF +GFY+
Sbjct  133   -------------------------VTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYS  167

Query  986   CLDRAALSIFTPEAFKTVVEGIQEIDLGELERHARYEGGFGPHHRVIQDFWSIVKSFSQE  1045
              + + ALS+FTPE  + ++ G  EID+ +L+++  Y+GG+  +   IQ FW I++ FS E
Sbjct  168   VIPKEALSLFTPEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPE  227

Query  1046  KKAQLLEFVTASDRVPVNGIASI-MFVIQRNGV-GDARLPTSLTCFGRLLLPEYSSKSVL  1103
             ++   L+FVT S R+PV G  S+  F I R G   D RLPT+ TCF RL LP+YSSK +L
Sbjct  228   QRRLFLKFVTGSSRLPVGGFKSLPKFTIVRKGGDDDDRLPTAHTCFNRLKLPDYSSKEIL  287

Query  1104  EEKLNKALENARGFGVA  1120
             +EKL  A+E   GFG++
Sbjct  288   KEKLLIAIEEGEGFGLS  304



Lambda      K        H        a         alpha
   0.319    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1428351474


Query= TCONS_00010946

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  65.7    1e-13


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 65.7 bits (161),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 46/201 (23%), Positives = 70/201 (35%), Gaps = 31/201 (15%)

Query  8    VRHAQGVHNLSTANHVIHDPSLTDLGNEQCRILRDNFPFHDRIELITASPLRRTIYTAYQ  67
            VRH +   NL        D  LT+LG EQ   L +     +  + I +SPL+R   TA  
Sbjct  4    VRHGETEWNLEGRFQGRTDSPLTELGREQAEALAERLA-GEPFDAIYSSPLKRARQTA--  60

Query  68   SFQPVLEKHKDMKIVLLPDVQETSDVPCDTG-----SDPEVLRKEMEEQGIPVDMSLVQE  122
              + + E    + + + P ++E      D G     +  E+  +  EE            
Sbjct  61   --EIIAEAL-GLPVEIDPRLRE-----IDFGDWEGLTFEEIAERYPEEYDAW--------  104

Query  123  GWNSKTGRYAPTNE---AIKNRARAARRWLKER-PEKEIVVVTHGGFLHYFTEDWEDSSL  178
                      P  E    ++ R RAA   L  R P K ++VV+HGG +           L
Sbjct  105  -LADPADYRPPGGESLADVRARVRAALEELAARHPGKTVLVVSHGGVIRALLAHLLGLPL  163

Query  179  --YQGTGWGNTEYRSFVFSDE  197
               +     N       F   
Sbjct  164  EALRRFPLDNASLSILEFDGG  184



Lambda      K        H        a         alpha
   0.316    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00010947

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  65.7    1e-13


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 65.7 bits (161),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 46/201 (23%), Positives = 70/201 (35%), Gaps = 31/201 (15%)

Query  8    VRHAQGVHNLSTANHVIHDPSLTDLGNEQCRILRDNFPFHDRIELITASPLRRTIYTAYQ  67
            VRH +   NL        D  LT+LG EQ   L +     +  + I +SPL+R   TA  
Sbjct  4    VRHGETEWNLEGRFQGRTDSPLTELGREQAEALAERLA-GEPFDAIYSSPLKRARQTA--  60

Query  68   SFQPVLEKHKDMKIVLLPDVQETSDVPCDTG-----SDPEVLRKEMEEQGIPVDMSLVQE  122
              + + E    + + + P ++E      D G     +  E+  +  EE            
Sbjct  61   --EIIAEAL-GLPVEIDPRLRE-----IDFGDWEGLTFEEIAERYPEEYDAW--------  104

Query  123  GWNSKTGRYAPTNE---AIKNRARAARRWLKER-PEKEIVVVTHGGFLHYFTEDWEDSSL  178
                      P  E    ++ R RAA   L  R P K ++VV+HGG +           L
Sbjct  105  -LADPADYRPPGGESLADVRARVRAALEELAARHPGKTVLVVSHGGVIRALLAHLLGLPL  163

Query  179  --YQGTGWGNTEYRSFVFSDE  197
               +     N       F   
Sbjct  164  EALRRFPLDNASLSILEFDGG  184



Lambda      K        H        a         alpha
   0.316    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00010950

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  65.7    1e-13


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 65.7 bits (161),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 46/201 (23%), Positives = 70/201 (35%), Gaps = 31/201 (15%)

Query  8    VRHAQGVHNLSTANHVIHDPSLTDLGNEQCRILRDNFPFHDRIELITASPLRRTIYTAYQ  67
            VRH +   NL        D  LT+LG EQ   L +     +  + I +SPL+R   TA  
Sbjct  4    VRHGETEWNLEGRFQGRTDSPLTELGREQAEALAERLA-GEPFDAIYSSPLKRARQTA--  60

Query  68   SFQPVLEKHKDMKIVLLPDVQETSDVPCDTG-----SDPEVLRKEMEEQGIPVDMSLVQE  122
              + + E    + + + P ++E      D G     +  E+  +  EE            
Sbjct  61   --EIIAEAL-GLPVEIDPRLRE-----IDFGDWEGLTFEEIAERYPEEYDAW--------  104

Query  123  GWNSKTGRYAPTNE---AIKNRARAARRWLKER-PEKEIVVVTHGGFLHYFTEDWEDSSL  178
                      P  E    ++ R RAA   L  R P K ++VV+HGG +           L
Sbjct  105  -LADPADYRPPGGESLADVRARVRAALEELAARHPGKTVLVVSHGGVIRALLAHLLGLPL  163

Query  179  --YQGTGWGNTEYRSFVFSDE  197
               +     N       F   
Sbjct  164  EALRRFPLDNASLSILEFDGG  184



Lambda      K        H        a         alpha
   0.316    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00010949

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  65.7    1e-13


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 65.7 bits (161),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 46/201 (23%), Positives = 70/201 (35%), Gaps = 31/201 (15%)

Query  8    VRHAQGVHNLSTANHVIHDPSLTDLGNEQCRILRDNFPFHDRIELITASPLRRTIYTAYQ  67
            VRH +   NL        D  LT+LG EQ   L +     +  + I +SPL+R   TA  
Sbjct  4    VRHGETEWNLEGRFQGRTDSPLTELGREQAEALAERLA-GEPFDAIYSSPLKRARQTA--  60

Query  68   SFQPVLEKHKDMKIVLLPDVQETSDVPCDTG-----SDPEVLRKEMEEQGIPVDMSLVQE  122
              + + E    + + + P ++E      D G     +  E+  +  EE            
Sbjct  61   --EIIAEAL-GLPVEIDPRLRE-----IDFGDWEGLTFEEIAERYPEEYDAW--------  104

Query  123  GWNSKTGRYAPTNE---AIKNRARAARRWLKER-PEKEIVVVTHGGFLHYFTEDWEDSSL  178
                      P  E    ++ R RAA   L  R P K ++VV+HGG +           L
Sbjct  105  -LADPADYRPPGGESLADVRARVRAALEELAARHPGKTVLVVSHGGVIRALLAHLLGLPL  163

Query  179  --YQGTGWGNTEYRSFVFSDE  197
               +     N       F   
Sbjct  164  EALRRFPLDNASLSILEFDGG  184



Lambda      K        H        a         alpha
   0.316    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0744    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00017435

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  67.6    9e-15


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 67.6 bits (166),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 46/201 (23%), Positives = 70/201 (35%), Gaps = 31/201 (15%)

Query  8    VRHAQGVHNLSTANHVIHDPSLTDLGNEQCRILRDNFPFHDRIELITASPLRRTIYTAYQ  67
            VRH +   NL        D  LT+LG EQ   L +     +  + I +SPL+R   TA  
Sbjct  4    VRHGETEWNLEGRFQGRTDSPLTELGREQAEALAERLA-GEPFDAIYSSPLKRARQTA--  60

Query  68   SFQPVLEKHKDMKIVLLPDVQETSDVPCDTG-----SDPEVLRKEMEEQGIPVDMSLVQE  122
              + + E    + + + P ++E      D G     +  E+  +  EE            
Sbjct  61   --EIIAEAL-GLPVEIDPRLRE-----IDFGDWEGLTFEEIAERYPEEYDAW--------  104

Query  123  GWNSKTGRYAPTNE---AIKNRARAARRWLKER-PEKEIVVVTHGGFLHYFTEDWEDSSL  178
                      P  E    ++ R RAA   L  R P K ++VV+HGG +           L
Sbjct  105  -LADPADYRPPGGESLADVRARVRAALEELAARHPGKTVLVVSHGGVIRALLAHLLGLPL  163

Query  179  --YQGTGWGNTEYRSFVFSDE  197
               +     N       F   
Sbjct  164  EALRRFPLDNASLSILEFDGG  184



Lambda      K        H        a         alpha
   0.318    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00010951

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00017436

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  66.1    1e-13


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 66.1 bits (162),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 46/201 (23%), Positives = 70/201 (35%), Gaps = 31/201 (15%)

Query  8    VRHAQGVHNLSTANHVIHDPSLTDLGNEQCRILRDNFPFHDRIELITASPLRRTIYTAYQ  67
            VRH +   NL        D  LT+LG EQ   L +     +  + I +SPL+R   TA  
Sbjct  4    VRHGETEWNLEGRFQGRTDSPLTELGREQAEALAERLA-GEPFDAIYSSPLKRARQTA--  60

Query  68   SFQPVLEKHKDMKIVLLPDVQETSDVPCDTG-----SDPEVLRKEMEEQGIPVDMSLVQE  122
              + + E    + + + P ++E      D G     +  E+  +  EE            
Sbjct  61   --EIIAEAL-GLPVEIDPRLRE-----IDFGDWEGLTFEEIAERYPEEYDAW--------  104

Query  123  GWNSKTGRYAPTNE---AIKNRARAARRWLKER-PEKEIVVVTHGGFLHYFTEDWEDSSL  178
                      P  E    ++ R RAA   L  R P K ++VV+HGG +           L
Sbjct  105  -LADPADYRPPGGESLADVRARVRAALEELAARHPGKTVLVVSHGGVIRALLAHLLGLPL  163

Query  179  --YQGTGWGNTEYRSFVFSDE  197
               +     N       F   
Sbjct  164  EALRRFPLDNASLSILEFDGG  184



Lambda      K        H        a         alpha
   0.316    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00017437

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00010952

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00010956

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00010953

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00017438

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00010955

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00010954

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00017439

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00017440

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.146    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00010957

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00017441

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00010959

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425696 pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase   229     2e-73


>CDD:425696 pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase.  
Length=362

 Score = 229 bits (585),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 98/271 (36%), Positives = 141/271 (52%), Gaps = 37/271 (14%)

Query  23   GLPVTKALRPLVAVPTTAGTGSETTGTAIFDLVSKKAKTGIAHRNLKPTLGICDPLNTRT  82
            G P+TK   PL+A+PTTAGTGSE T  A+        K GI    L P L I DP  T T
Sbjct  114  GKPLTKPALPLIAIPTTAGTGSEVTPLAVITDTETGEKLGIFSPKLLPDLAILDPELTLT  173

Query  83   MPSAVHASSGLDVLCHSLESWTAIPYNERTPRPTNPINRPAYQGANPISDIFSLQALRST  142
            +P  + A++G+D L H++E++ +                   +GANP++D  +L+A+R  
Sbjct  174  LPPRLTAATGMDALAHAVEAYVS-------------------KGANPLTDALALEAIRLI  214

Query  143  VKYLPRAVRDPDDFEAQSQMLLAATLAGVGFGNAGVHLCHGMSYPISSQNPGYKHAGYDV  202
             + LPRAV D +D EA+  MLLA+TLAG+ F NAG+   H +++ +           Y  
Sbjct  215  AENLPRAVADGEDLEARENMLLASTLAGLAFSNAGLGAAHALAHALG--------GRYG-  265

Query  203  DHPIIPHGVSVAVTAPAVFRFTAASNPDRHLAAAEAFGVDISNVKRESAGEVLGEALAKF  262
                IPHG++ A+  P V RF A + P++    A A G D      E A E   EAL + 
Sbjct  266  ----IPHGLANAILLPYVLRFNAPAAPEKLAQLARALGEDSD----EEAAEEAIEALREL  317

Query  263  LADLGDQPRGLKDLGFKHSDIESLVEGTIPQ  293
            L +LG  P  L +LG    D+++L E  +  
Sbjct  318  LRELG-LPTTLSELGVTEEDLDALAEAALRD  347



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00017443

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00010960

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425696 pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase   229     2e-73


>CDD:425696 pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase.  
Length=362

 Score = 229 bits (585),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 98/271 (36%), Positives = 141/271 (52%), Gaps = 37/271 (14%)

Query  23   GLPVTKALRPLVAVPTTAGTGSETTGTAIFDLVSKKAKTGIAHRNLKPTLGICDPLNTRT  82
            G P+TK   PL+A+PTTAGTGSE T  A+        K GI    L P L I DP  T T
Sbjct  114  GKPLTKPALPLIAIPTTAGTGSEVTPLAVITDTETGEKLGIFSPKLLPDLAILDPELTLT  173

Query  83   MPSAVHASSGLDVLCHSLESWTAIPYNERTPRPTNPINRPAYQGANPISDIFSLQALRST  142
            +P  + A++G+D L H++E++ +                   +GANP++D  +L+A+R  
Sbjct  174  LPPRLTAATGMDALAHAVEAYVS-------------------KGANPLTDALALEAIRLI  214

Query  143  VKYLPRAVRDPDDFEAQSQMLLAATLAGVGFGNAGVHLCHGMSYPISSQNPGYKHAGYDV  202
             + LPRAV D +D EA+  MLLA+TLAG+ F NAG+   H +++ +           Y  
Sbjct  215  AENLPRAVADGEDLEARENMLLASTLAGLAFSNAGLGAAHALAHALG--------GRYG-  265

Query  203  DHPIIPHGVSVAVTAPAVFRFTAASNPDRHLAAAEAFGVDISNVKRESAGEVLGEALAKF  262
                IPHG++ A+  P V RF A + P++    A A G D      E A E   EAL + 
Sbjct  266  ----IPHGLANAILLPYVLRFNAPAAPEKLAQLARALGEDSD----EEAAEEAIEALREL  317

Query  263  LADLGDQPRGLKDLGFKHSDIESLVEGTIPQ  293
            L +LG  P  L +LG    D+++L E  +  
Sbjct  318  LRELG-LPTTLSELGVTEEDLDALAEAALRD  347



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00017444

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00010961

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425696 pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase   229     2e-73


>CDD:425696 pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase.  
Length=362

 Score = 229 bits (585),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 98/271 (36%), Positives = 141/271 (52%), Gaps = 37/271 (14%)

Query  23   GLPVTKALRPLVAVPTTAGTGSETTGTAIFDLVSKKAKTGIAHRNLKPTLGICDPLNTRT  82
            G P+TK   PL+A+PTTAGTGSE T  A+        K GI    L P L I DP  T T
Sbjct  114  GKPLTKPALPLIAIPTTAGTGSEVTPLAVITDTETGEKLGIFSPKLLPDLAILDPELTLT  173

Query  83   MPSAVHASSGLDVLCHSLESWTAIPYNERTPRPTNPINRPAYQGANPISDIFSLQALRST  142
            +P  + A++G+D L H++E++ +                   +GANP++D  +L+A+R  
Sbjct  174  LPPRLTAATGMDALAHAVEAYVS-------------------KGANPLTDALALEAIRLI  214

Query  143  VKYLPRAVRDPDDFEAQSQMLLAATLAGVGFGNAGVHLCHGMSYPISSQNPGYKHAGYDV  202
             + LPRAV D +D EA+  MLLA+TLAG+ F NAG+   H +++ +           Y  
Sbjct  215  AENLPRAVADGEDLEARENMLLASTLAGLAFSNAGLGAAHALAHALG--------GRYG-  265

Query  203  DHPIIPHGVSVAVTAPAVFRFTAASNPDRHLAAAEAFGVDISNVKRESAGEVLGEALAKF  262
                IPHG++ A+  P V RF A + P++    A A G D      E A E   EAL + 
Sbjct  266  ----IPHGLANAILLPYVLRFNAPAAPEKLAQLARALGEDSD----EEAAEEAIEALREL  317

Query  263  LADLGDQPRGLKDLGFKHSDIESLVEGTIPQ  293
            L +LG  P  L +LG    D+++L E  +  
Sbjct  318  LRELG-LPTTLSELGVTEEDLDALAEAALRD  347



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00010963

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00010965

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00010966

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         198     3e-60


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 198 bits (505),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 105/333 (32%), Positives = 165/333 (50%), Gaps = 20/333 (6%)

Query  1    MYAAEMSPKEVRGRLGACFQWFFACGVMVAYWVTYAVSKDQPSATKQWQIALGLQLLPST  60
            MY +E++PK++RG LG+ +Q     G+++AY     ++K   S +  W+I LGLQL+P+ 
Sbjct  125  MYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKT--SNSDGWRIPLGLQLVPAL  182

Query  61   LLLAGMCTVKESARWLAAQGRTDAAWDSLRWVRGGEETADLRQEFDEILTGLQEEARVRE  120
            LL+ G+  + ES RWL  +GR + A + L  +RG     D+ +E DEI   L E  +  E
Sbjct  183  LLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRG---VPDVDRELDEIKDSL-EAGQEAE  238

Query  121  NWTWRELL-LPANRYRIFIAVTIQLCAQLTGNTSLAYYATQIFAAVGAGTSAKLVTGFFG  179
              +W+EL      R R+ I V +Q+  QLTG  ++ YY+T IF  +G   S   +     
Sbjct  239  KASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDS--FLVTIIV  296

Query  180  VVKVVGVSVFQLLVMDRIGRRVPFMVGAGAMGSFMLIIACVLATHPTKASPGGAETGATT  239
             V     +   + ++DR GRR   ++GA  M    +I+  V       +    A      
Sbjct  297  GVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIV--ALLGVSKSDWA------  348

Query  240  HAGIAMIIMTYAEAFSFNMSWGPLPWLYVGEIFSSRTREVGVTVGAASQWLFNFMMSQVT  299
              GI  I+        F M WGP+PW+ V E+F    R   + +  A+ WL NF++  + 
Sbjct  349  --GIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLF  406

Query  300  PHAIENIGWR-MFLMFAIFNYSIIGYSWFFLRE  331
            P   + IG    F +FA      I + +FF+ E
Sbjct  407  PIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPE  439



Lambda      K        H        a         alpha
   0.326    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00010967

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         198     3e-60


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 198 bits (505),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 105/333 (32%), Positives = 165/333 (50%), Gaps = 20/333 (6%)

Query  1    MYAAEMSPKEVRGRLGACFQWFFACGVMVAYWVTYAVSKDQPSATKQWQIALGLQLLPST  60
            MY +E++PK++RG LG+ +Q     G+++AY     ++K   S +  W+I LGLQL+P+ 
Sbjct  125  MYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKT--SNSDGWRIPLGLQLVPAL  182

Query  61   LLLAGMCTVKESARWLAAQGRTDAAWDSLRWVRGGEETADLRQEFDEILTGLQEEARVRE  120
            LL+ G+  + ES RWL  +GR + A + L  +RG     D+ +E DEI   L E  +  E
Sbjct  183  LLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRG---VPDVDRELDEIKDSL-EAGQEAE  238

Query  121  NWTWRELL-LPANRYRIFIAVTIQLCAQLTGNTSLAYYATQIFAAVGAGTSAKLVTGFFG  179
              +W+EL      R R+ I V +Q+  QLTG  ++ YY+T IF  +G   S   +     
Sbjct  239  KASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDS--FLVTIIV  296

Query  180  VVKVVGVSVFQLLVMDRIGRRVPFMVGAGAMGSFMLIIACVLATHPTKASPGGAETGATT  239
             V     +   + ++DR GRR   ++GA  M    +I+  V       +    A      
Sbjct  297  GVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIV--ALLGVSKSDWA------  348

Query  240  HAGIAMIIMTYAEAFSFNMSWGPLPWLYVGEIFSSRTREVGVTVGAASQWLFNFMMSQVT  299
              GI  I+        F M WGP+PW+ V E+F    R   + +  A+ WL NF++  + 
Sbjct  349  --GIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLF  406

Query  300  PHAIENIGWR-MFLMFAIFNYSIIGYSWFFLRE  331
            P   + IG    F +FA      I + +FF+ E
Sbjct  407  PIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPE  439



Lambda      K        H        a         alpha
   0.326    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00017445

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         198     3e-60


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 198 bits (505),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 105/333 (32%), Positives = 165/333 (50%), Gaps = 20/333 (6%)

Query  1    MYAAEMSPKEVRGRLGACFQWFFACGVMVAYWVTYAVSKDQPSATKQWQIALGLQLLPST  60
            MY +E++PK++RG LG+ +Q     G+++AY     ++K   S +  W+I LGLQL+P+ 
Sbjct  125  MYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKT--SNSDGWRIPLGLQLVPAL  182

Query  61   LLLAGMCTVKESARWLAAQGRTDAAWDSLRWVRGGEETADLRQEFDEILTGLQEEARVRE  120
            LL+ G+  + ES RWL  +GR + A + L  +RG     D+ +E DEI   L E  +  E
Sbjct  183  LLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRG---VPDVDRELDEIKDSL-EAGQEAE  238

Query  121  NWTWRELL-LPANRYRIFIAVTIQLCAQLTGNTSLAYYATQIFAAVGAGTSAKLVTGFFG  179
              +W+EL      R R+ I V +Q+  QLTG  ++ YY+T IF  +G   S   +     
Sbjct  239  KASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDS--FLVTIIV  296

Query  180  VVKVVGVSVFQLLVMDRIGRRVPFMVGAGAMGSFMLIIACVLATHPTKASPGGAETGATT  239
             V     +   + ++DR GRR   ++GA  M    +I+  V       +    A      
Sbjct  297  GVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIV--ALLGVSKSDWA------  348

Query  240  HAGIAMIIMTYAEAFSFNMSWGPLPWLYVGEIFSSRTREVGVTVGAASQWLFNFMMSQVT  299
              GI  I+        F M WGP+PW+ V E+F    R   + +  A+ WL NF++  + 
Sbjct  349  --GIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLF  406

Query  300  PHAIENIGWR-MFLMFAIFNYSIIGYSWFFLRE  331
            P   + IG    F +FA      I + +FF+ E
Sbjct  407  PIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPE  439



Lambda      K        H        a         alpha
   0.326    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00010970

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         198     3e-60


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 198 bits (505),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 105/333 (32%), Positives = 165/333 (50%), Gaps = 20/333 (6%)

Query  1    MYAAEMSPKEVRGRLGACFQWFFACGVMVAYWVTYAVSKDQPSATKQWQIALGLQLLPST  60
            MY +E++PK++RG LG+ +Q     G+++AY     ++K   S +  W+I LGLQL+P+ 
Sbjct  125  MYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKT--SNSDGWRIPLGLQLVPAL  182

Query  61   LLLAGMCTVKESARWLAAQGRTDAAWDSLRWVRGGEETADLRQEFDEILTGLQEEARVRE  120
            LL+ G+  + ES RWL  +GR + A + L  +RG     D+ +E DEI   L E  +  E
Sbjct  183  LLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRG---VPDVDRELDEIKDSL-EAGQEAE  238

Query  121  NWTWRELL-LPANRYRIFIAVTIQLCAQLTGNTSLAYYATQIFAAVGAGTSAKLVTGFFG  179
              +W+EL      R R+ I V +Q+  QLTG  ++ YY+T IF  +G   S   +     
Sbjct  239  KASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDS--FLVTIIV  296

Query  180  VVKVVGVSVFQLLVMDRIGRRVPFMVGAGAMGSFMLIIACVLATHPTKASPGGAETGATT  239
             V     +   + ++DR GRR   ++GA  M    +I+  V       +    A      
Sbjct  297  GVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIV--ALLGVSKSDWA------  348

Query  240  HAGIAMIIMTYAEAFSFNMSWGPLPWLYVGEIFSSRTREVGVTVGAASQWLFNFMMSQVT  299
              GI  I+        F M WGP+PW+ V E+F    R   + +  A+ WL NF++  + 
Sbjct  349  --GIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLF  406

Query  300  PHAIENIGWR-MFLMFAIFNYSIIGYSWFFLRE  331
            P   + IG    F +FA      I + +FF+ E
Sbjct  407  PIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPE  439



Lambda      K        H        a         alpha
   0.326    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00017446

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         198     3e-60


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 198 bits (505),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 105/333 (32%), Positives = 165/333 (50%), Gaps = 20/333 (6%)

Query  1    MYAAEMSPKEVRGRLGACFQWFFACGVMVAYWVTYAVSKDQPSATKQWQIALGLQLLPST  60
            MY +E++PK++RG LG+ +Q     G+++AY     ++K   S +  W+I LGLQL+P+ 
Sbjct  125  MYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKT--SNSDGWRIPLGLQLVPAL  182

Query  61   LLLAGMCTVKESARWLAAQGRTDAAWDSLRWVRGGEETADLRQEFDEILTGLQEEARVRE  120
            LL+ G+  + ES RWL  +GR + A + L  +RG     D+ +E DEI   L E  +  E
Sbjct  183  LLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRG---VPDVDRELDEIKDSL-EAGQEAE  238

Query  121  NWTWRELL-LPANRYRIFIAVTIQLCAQLTGNTSLAYYATQIFAAVGAGTSAKLVTGFFG  179
              +W+EL      R R+ I V +Q+  QLTG  ++ YY+T IF  +G   S   +     
Sbjct  239  KASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDS--FLVTIIV  296

Query  180  VVKVVGVSVFQLLVMDRIGRRVPFMVGAGAMGSFMLIIACVLATHPTKASPGGAETGATT  239
             V     +   + ++DR GRR   ++GA  M    +I+  V       +    A      
Sbjct  297  GVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIV--ALLGVSKSDWA------  348

Query  240  HAGIAMIIMTYAEAFSFNMSWGPLPWLYVGEIFSSRTREVGVTVGAASQWLFNFMMSQVT  299
              GI  I+        F M WGP+PW+ V E+F    R   + +  A+ WL NF++  + 
Sbjct  349  --GIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLF  406

Query  300  PHAIENIGWR-MFLMFAIFNYSIIGYSWFFLRE  331
            P   + IG    F +FA      I + +FF+ E
Sbjct  407  PIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPE  439



Lambda      K        H        a         alpha
   0.326    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00010968

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         198     3e-60


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 198 bits (505),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 105/333 (32%), Positives = 165/333 (50%), Gaps = 20/333 (6%)

Query  1    MYAAEMSPKEVRGRLGACFQWFFACGVMVAYWVTYAVSKDQPSATKQWQIALGLQLLPST  60
            MY +E++PK++RG LG+ +Q     G+++AY     ++K   S +  W+I LGLQL+P+ 
Sbjct  125  MYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKT--SNSDGWRIPLGLQLVPAL  182

Query  61   LLLAGMCTVKESARWLAAQGRTDAAWDSLRWVRGGEETADLRQEFDEILTGLQEEARVRE  120
            LL+ G+  + ES RWL  +GR + A + L  +RG     D+ +E DEI   L E  +  E
Sbjct  183  LLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRG---VPDVDRELDEIKDSL-EAGQEAE  238

Query  121  NWTWRELL-LPANRYRIFIAVTIQLCAQLTGNTSLAYYATQIFAAVGAGTSAKLVTGFFG  179
              +W+EL      R R+ I V +Q+  QLTG  ++ YY+T IF  +G   S   +     
Sbjct  239  KASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDS--FLVTIIV  296

Query  180  VVKVVGVSVFQLLVMDRIGRRVPFMVGAGAMGSFMLIIACVLATHPTKASPGGAETGATT  239
             V     +   + ++DR GRR   ++GA  M    +I+  V       +    A      
Sbjct  297  GVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIV--ALLGVSKSDWA------  348

Query  240  HAGIAMIIMTYAEAFSFNMSWGPLPWLYVGEIFSSRTREVGVTVGAASQWLFNFMMSQVT  299
              GI  I+        F M WGP+PW+ V E+F    R   + +  A+ WL NF++  + 
Sbjct  349  --GIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLF  406

Query  300  PHAIENIGWR-MFLMFAIFNYSIIGYSWFFLRE  331
            P   + IG    F +FA      I + +FF+ E
Sbjct  407  PIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPE  439



Lambda      K        H        a         alpha
   0.326    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00010969

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         198     3e-60


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 198 bits (505),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 105/333 (32%), Positives = 165/333 (50%), Gaps = 20/333 (6%)

Query  1    MYAAEMSPKEVRGRLGACFQWFFACGVMVAYWVTYAVSKDQPSATKQWQIALGLQLLPST  60
            MY +E++PK++RG LG+ +Q     G+++AY     ++K   S +  W+I LGLQL+P+ 
Sbjct  125  MYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKT--SNSDGWRIPLGLQLVPAL  182

Query  61   LLLAGMCTVKESARWLAAQGRTDAAWDSLRWVRGGEETADLRQEFDEILTGLQEEARVRE  120
            LL+ G+  + ES RWL  +GR + A + L  +RG     D+ +E DEI   L E  +  E
Sbjct  183  LLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRG---VPDVDRELDEIKDSL-EAGQEAE  238

Query  121  NWTWRELL-LPANRYRIFIAVTIQLCAQLTGNTSLAYYATQIFAAVGAGTSAKLVTGFFG  179
              +W+EL      R R+ I V +Q+  QLTG  ++ YY+T IF  +G   S   +     
Sbjct  239  KASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDS--FLVTIIV  296

Query  180  VVKVVGVSVFQLLVMDRIGRRVPFMVGAGAMGSFMLIIACVLATHPTKASPGGAETGATT  239
             V     +   + ++DR GRR   ++GA  M    +I+  V       +    A      
Sbjct  297  GVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIV--ALLGVSKSDWA------  348

Query  240  HAGIAMIIMTYAEAFSFNMSWGPLPWLYVGEIFSSRTREVGVTVGAASQWLFNFMMSQVT  299
              GI  I+        F M WGP+PW+ V E+F    R   + +  A+ WL NF++  + 
Sbjct  349  --GIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLF  406

Query  300  PHAIENIGWR-MFLMFAIFNYSIIGYSWFFLRE  331
            P   + IG    F +FA      I + +FF+ E
Sbjct  407  PIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPE  439



Lambda      K        H        a         alpha
   0.326    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00010971

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  617     0.0  


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 617 bits (1593),  Expect = 0.0, Method: Composition-based stats.
 Identities = 241/374 (64%), Positives = 291/374 (78%), Gaps = 6/374 (2%)

Query  13   SARRLIGRKFDDKDVQKDAKNFPYKVVNKD-GKPVVKVEVNKSPKIFTPEEVSAMVLGKM  71
            S +RLIGRKF D  VQ+D K+ PYKVV    G   V+V      + FTPE++SAM+L K+
Sbjct  64   SVKRLIGRKFSDPVVQRDIKHLPYKVVKLPNGDAGVEVRYLG--ETFTPEQISAMILQKL  121

Query  72   KDIAEGYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRVVNEPTAAAIAYGLDK  131
            K+ AE YLGK VT AV+TVPAYFNDAQRQATKDAG IAGLNVLR+VNEPTAAA+AYGLDK
Sbjct  122  KETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGQIAGLNVLRIVNEPTAAALAYGLDK  181

Query  132  TGDERMVIVYDLGGGTFDVSLLSIDNGVFEVLATAGDTHLGGEDFDHRVMDYFVKQYNKK  191
            T  ER + VYDLGGGTFDVS+L I  GVFEV AT GDTHLGGEDFD R++D+  +++ KK
Sbjct  182  TDKERNIAVYDLGGGTFDVSILEIGRGVFEVKATNGDTHLGGEDFDLRLVDHLAEEFKKK  241

Query  192  HNVDVSKDLKAMGKLKREVEKAKRTLSS-QMSTRIEIESFHN-GEDFSETLTRAKFEELN  249
            + +D+SKD +A+ +L+   EKAK  LSS Q +  +   +    G+D S TLTRAKFEEL 
Sbjct  242  YGIDLSKDKRALQRLREAAEKAKIELSSNQTNINLPFITAMADGKDVSGTLTRAKFEELV  301

Query  250  MDLFKKTLKPVEQVLKDAKVKKSDVNDIVLVGGSTRIPKVQALLEEFFGGKKASKGINPD  309
             DLF++TL+PVE+ LKDA + KS+++++VLVGGSTRIP VQ L++EFF GK+ SKG+NPD
Sbjct  302  ADLFERTLEPVEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKEFF-GKEPSKGVNPD  360

Query  310  EAVAFGAAVQGGVLSGEEGTGDVVLMDVNPLTLGIETTGGVMTKLIPRNTVIPTRKSQIF  369
            EAVA GAAVQ GVLSG     D +L+DV PL+LGIET GGVMTKLIPRNT IPT+KSQIF
Sbjct  361  EAVAIGAAVQAGVLSGTFDVKDFLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQIF  420

Query  370  STAADNQPTVLIQV  383
            STAADNQ  V IQV
Sbjct  421  STAADNQTAVEIQV  434



Lambda      K        H        a         alpha
   0.316    0.134    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00017447

Length=220
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          90.7    6e-24


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 90.7 bits (226),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 44/123 (36%), Positives = 66/123 (54%), Gaps = 4/123 (3%)

Query  61   VQYAKAHGALVIGVDAGD-KRDFVLGLGAIEFVDFKSVDPVQRVHEIT-GLGAHAVVVTA  118
            +Q AKA GA VI VD  + K +    LGA   ++ K  D V+ + E+T G G   V    
Sbjct  7    IQLAKAAGAKVIAVDGSEEKLELAKELGADHVINPKETDLVEEIKELTGGKGVDVVFDCV  66

Query  119  GNAKAFAHACDMLRVGGTLSCVGIPPGRPVLETPICTIVIKGLRITGNLVGSLKECMEAV  178
            G+      A  +LR GG +  VG+P G   L  P+  +++K L I G+ +GS +E  EA+
Sbjct  67   GSPATLEQALKLLRPGGRVVVVGLPGGPLPL--PLAPLLLKELTILGSFLGSPEEFPEAL  124

Query  179  ELV  181
            +L+
Sbjct  125  DLL  127



Lambda      K        H        a         alpha
   0.323    0.143    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00010972

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  89.2    1e-23


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 89.2 bits (222),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 50/114 (44%), Gaps = 10/114 (9%)

Query  36   NEVLAKVLYTGVCQSDLHTKNGTAAGADGNPITNIKRPHVGGHEGVGRIVAVGPGCGPGL  95
             EVL KV   G+C SDLH   G            +K P + GHE  G +V VGPG   GL
Sbjct  1    GEVLVKVKAAGICGSDLHIYKGG--------NPPVKLPLILGHEFAGEVVEVGPGV-TGL  51

Query  96   KVGGLVGIRFASRVCRRCEFCLAGTEQYCIRSTNHLHHEDGSFQMYIALDADYL  149
            KVG  V +      C +CE+C  G    C       +  DG F  Y+ +    L
Sbjct  52   KVGDRVVV-EPLIPCGKCEYCREGRYNLCPNGRFLGYDRDGGFAEYVVVPERNL  104



Lambda      K        H        a         alpha
   0.321    0.140    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00010973

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00010974

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  617     0.0  


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 617 bits (1593),  Expect = 0.0, Method: Composition-based stats.
 Identities = 241/374 (64%), Positives = 291/374 (78%), Gaps = 6/374 (2%)

Query  13   SARRLIGRKFDDKDVQKDAKNFPYKVVNKD-GKPVVKVEVNKSPKIFTPEEVSAMVLGKM  71
            S +RLIGRKF D  VQ+D K+ PYKVV    G   V+V      + FTPE++SAM+L K+
Sbjct  64   SVKRLIGRKFSDPVVQRDIKHLPYKVVKLPNGDAGVEVRYLG--ETFTPEQISAMILQKL  121

Query  72   KDIAEGYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRVVNEPTAAAIAYGLDK  131
            K+ AE YLGK VT AV+TVPAYFNDAQRQATKDAG IAGLNVLR+VNEPTAAA+AYGLDK
Sbjct  122  KETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGQIAGLNVLRIVNEPTAAALAYGLDK  181

Query  132  TGDERMVIVYDLGGGTFDVSLLSIDNGVFEVLATAGDTHLGGEDFDHRVMDYFVKQYNKK  191
            T  ER + VYDLGGGTFDVS+L I  GVFEV AT GDTHLGGEDFD R++D+  +++ KK
Sbjct  182  TDKERNIAVYDLGGGTFDVSILEIGRGVFEVKATNGDTHLGGEDFDLRLVDHLAEEFKKK  241

Query  192  HNVDVSKDLKAMGKLKREVEKAKRTLSS-QMSTRIEIESFHN-GEDFSETLTRAKFEELN  249
            + +D+SKD +A+ +L+   EKAK  LSS Q +  +   +    G+D S TLTRAKFEEL 
Sbjct  242  YGIDLSKDKRALQRLREAAEKAKIELSSNQTNINLPFITAMADGKDVSGTLTRAKFEELV  301

Query  250  MDLFKKTLKPVEQVLKDAKVKKSDVNDIVLVGGSTRIPKVQALLEEFFGGKKASKGINPD  309
             DLF++TL+PVE+ LKDA + KS+++++VLVGGSTRIP VQ L++EFF GK+ SKG+NPD
Sbjct  302  ADLFERTLEPVEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKEFF-GKEPSKGVNPD  360

Query  310  EAVAFGAAVQGGVLSGEEGTGDVVLMDVNPLTLGIETTGGVMTKLIPRNTVIPTRKSQIF  369
            EAVA GAAVQ GVLSG     D +L+DV PL+LGIET GGVMTKLIPRNT IPT+KSQIF
Sbjct  361  EAVAIGAAVQAGVLSGTFDVKDFLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQIF  420

Query  370  STAADNQPTVLIQV  383
            STAADNQ  V IQV
Sbjct  421  STAADNQTAVEIQV  434



Lambda      K        H        a         alpha
   0.316    0.134    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00010975

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394970 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help...  617     0.0  


>CDD:394970 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold 
many proteins. Hsp70 assisted folding involves repeated cycles 
of substrate binding and release. Hsp70 activity is ATP 
dependent. Hsp70 proteins are made up of two regions: the 
amino terminus is the ATPase domain and the carboxyl terminus 
is the substrate binding region.
Length=598

 Score = 617 bits (1593),  Expect = 0.0, Method: Composition-based stats.
 Identities = 241/374 (64%), Positives = 291/374 (78%), Gaps = 6/374 (2%)

Query  13   SARRLIGRKFDDKDVQKDAKNFPYKVVNKD-GKPVVKVEVNKSPKIFTPEEVSAMVLGKM  71
            S +RLIGRKF D  VQ+D K+ PYKVV    G   V+V      + FTPE++SAM+L K+
Sbjct  64   SVKRLIGRKFSDPVVQRDIKHLPYKVVKLPNGDAGVEVRYLG--ETFTPEQISAMILQKL  121

Query  72   KDIAEGYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRVVNEPTAAAIAYGLDK  131
            K+ AE YLGK VT AV+TVPAYFNDAQRQATKDAG IAGLNVLR+VNEPTAAA+AYGLDK
Sbjct  122  KETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGQIAGLNVLRIVNEPTAAALAYGLDK  181

Query  132  TGDERMVIVYDLGGGTFDVSLLSIDNGVFEVLATAGDTHLGGEDFDHRVMDYFVKQYNKK  191
            T  ER + VYDLGGGTFDVS+L I  GVFEV AT GDTHLGGEDFD R++D+  +++ KK
Sbjct  182  TDKERNIAVYDLGGGTFDVSILEIGRGVFEVKATNGDTHLGGEDFDLRLVDHLAEEFKKK  241

Query  192  HNVDVSKDLKAMGKLKREVEKAKRTLSS-QMSTRIEIESFHN-GEDFSETLTRAKFEELN  249
            + +D+SKD +A+ +L+   EKAK  LSS Q +  +   +    G+D S TLTRAKFEEL 
Sbjct  242  YGIDLSKDKRALQRLREAAEKAKIELSSNQTNINLPFITAMADGKDVSGTLTRAKFEELV  301

Query  250  MDLFKKTLKPVEQVLKDAKVKKSDVNDIVLVGGSTRIPKVQALLEEFFGGKKASKGINPD  309
             DLF++TL+PVE+ LKDA + KS+++++VLVGGSTRIP VQ L++EFF GK+ SKG+NPD
Sbjct  302  ADLFERTLEPVEKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKEFF-GKEPSKGVNPD  360

Query  310  EAVAFGAAVQGGVLSGEEGTGDVVLMDVNPLTLGIETTGGVMTKLIPRNTVIPTRKSQIF  369
            EAVA GAAVQ GVLSG     D +L+DV PL+LGIET GGVMTKLIPRNT IPT+KSQIF
Sbjct  361  EAVAIGAAVQAGVLSGTFDVKDFLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQIF  420

Query  370  STAADNQPTVLIQV  383
            STAADNQ  V IQV
Sbjct  421  STAADNQTAVEIQV  434



Lambda      K        H        a         alpha
   0.316    0.134    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00010980

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00010976

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00010977

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00017450

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00017451

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00010978

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00010979

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00017452

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00017453

Length=847
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459630 pfam00013, KH_1, KH domain. KH motifs bind RNA in vitr...  56.5    7e-11


>CDD:459630 pfam00013, KH_1, KH domain.  KH motifs bind RNA in vitro. Autoantibodies 
to Nova, a KH domain protein, cause paraneoplastic 
opsoclonus ataxia.
Length=65

 Score = 56.5 bits (137),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query  747  SATVSVAQSQIPSLIGQRGREMDKLRADTGAQIDVPGANDAPDASGRVQIKIKGTKQQVE  806
            +  + V  S +  +IG+ G  + ++R +TGA+I +P    +        + I GT + VE
Sbjct  1    TVEILVPSSLVGLIIGKGGSNIKEIREETGAKIQIP---PSESEGNERIVTITGTPEAVE  57

Query  807  EAKKILLQ  814
             AK ++ +
Sbjct  58   AAKALIEE  65


 Score = 56.5 bits (137),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 8/73 (11%)

Query  80   SVRIPIPTSARAHIIGRQGAIVQDIQQRTGARVQVPRADDSAAKDDEDDNDTIDVLIEGD  139
            +V I +P+S    IIG+ G+ +++I++ TGA++Q+P ++           +   V I G 
Sbjct  1    TVEILVPSSLVGLIIGKGGSNIKEIREETGAKIQIPPSESE--------GNERIVTITGT  52

Query  140  AVAAEMARREIEA  152
              A E A+  IE 
Sbjct  53   PEAVEAAKALIEE  65



Lambda      K        H        a         alpha
   0.316    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1079506528


Query= TCONS_00017454

Length=1169
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459630 pfam00013, KH_1, KH domain. KH motifs bind RNA in vitr...  65.8    6e-14


>CDD:459630 pfam00013, KH_1, KH domain.  KH motifs bind RNA in vitro. Autoantibodies 
to Nova, a KH domain protein, cause paraneoplastic 
opsoclonus ataxia.
Length=65

 Score = 65.8 bits (161),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 21/62 (34%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query  1099  ILPDPKTYRFVIGQGGSQINTIRKQTGCRINVPKDQARG--EAIEIKGSKDGLEKAKEMI  1156
             IL        +IG+GGS I  IR++TG +I +P  ++ G    + I G+ + +E AK +I
Sbjct  4     ILVPSSLVGLIIGKGGSNIKEIREETGAKIQIPPSESEGNERIVTITGTPEAVEAAKALI  63

Query  1157  LD  1158
              +
Sbjct  64    EE  65


 Score = 60.0 bits (146),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query  904  TVTVDIPPVQHRLLIGRGGETRRGIESQFNVTLDIPKQGSGRTD--IKLKGPSNAVESAK  961
            TV + +P     L+IG+GG   + I  +    + IP   S   +  + + G   AVE+AK
Sbjct  1    TVEILVPSSLVGLIIGKGGSNIKEIREETGAKIQIPPSESEGNERIVTITGTPEAVEAAK  60

Query  962  EHILA  966
              I  
Sbjct  61   ALIEE  65



Lambda      K        H        a         alpha
   0.315    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1496767136


Query= TCONS_00010983

Length=1169
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459630 pfam00013, KH_1, KH domain. KH motifs bind RNA in vitr...  65.8    6e-14


>CDD:459630 pfam00013, KH_1, KH domain.  KH motifs bind RNA in vitro. Autoantibodies 
to Nova, a KH domain protein, cause paraneoplastic 
opsoclonus ataxia.
Length=65

 Score = 65.8 bits (161),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 21/62 (34%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query  1099  ILPDPKTYRFVIGQGGSQINTIRKQTGCRINVPKDQARG--EAIEIKGSKDGLEKAKEMI  1156
             IL        +IG+GGS I  IR++TG +I +P  ++ G    + I G+ + +E AK +I
Sbjct  4     ILVPSSLVGLIIGKGGSNIKEIREETGAKIQIPPSESEGNERIVTITGTPEAVEAAKALI  63

Query  1157  LD  1158
              +
Sbjct  64    EE  65


 Score = 60.0 bits (146),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query  904  TVTVDIPPVQHRLLIGRGGETRRGIESQFNVTLDIPKQGSGRTD--IKLKGPSNAVESAK  961
            TV + +P     L+IG+GG   + I  +    + IP   S   +  + + G   AVE+AK
Sbjct  1    TVEILVPSSLVGLIIGKGGSNIKEIREETGAKIQIPPSESEGNERIVTITGTPEAVEAAK  60

Query  962  EHILA  966
              I  
Sbjct  61   ALIEE  65



Lambda      K        H        a         alpha
   0.315    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0694    0.140     1.90     42.6     43.6 

Effective search space used: 1496767136


Query= TCONS_00010984

Length=1169
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459630 pfam00013, KH_1, KH domain. KH motifs bind RNA in vitr...  65.8    6e-14


>CDD:459630 pfam00013, KH_1, KH domain.  KH motifs bind RNA in vitro. Autoantibodies 
to Nova, a KH domain protein, cause paraneoplastic 
opsoclonus ataxia.
Length=65

 Score = 65.8 bits (161),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 21/62 (34%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query  1099  ILPDPKTYRFVIGQGGSQINTIRKQTGCRINVPKDQARG--EAIEIKGSKDGLEKAKEMI  1156
             IL        +IG+GGS I  IR++TG +I +P  ++ G    + I G+ + +E AK +I
Sbjct  4     ILVPSSLVGLIIGKGGSNIKEIREETGAKIQIPPSESEGNERIVTITGTPEAVEAAKALI  63

Query  1157  LD  1158
              +
Sbjct  64    EE  65


 Score = 60.0 bits (146),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query  904  TVTVDIPPVQHRLLIGRGGETRRGIESQFNVTLDIPKQGSGRTD--IKLKGPSNAVESAK  961
            TV + +P     L+IG+GG   + I  +    + IP   S   +  + + G   AVE+AK
Sbjct  1    TVEILVPSSLVGLIIGKGGSNIKEIREETGAKIQIPPSESEGNERIVTITGTPEAVEAAK  60

Query  962  EHILA  966
              I  
Sbjct  61   ALIEE  65



Lambda      K        H        a         alpha
   0.315    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1496767136


Query= TCONS_00010982

Length=1169
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459630 pfam00013, KH_1, KH domain. KH motifs bind RNA in vitr...  65.8    6e-14


>CDD:459630 pfam00013, KH_1, KH domain.  KH motifs bind RNA in vitro. Autoantibodies 
to Nova, a KH domain protein, cause paraneoplastic 
opsoclonus ataxia.
Length=65

 Score = 65.8 bits (161),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 21/62 (34%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query  1099  ILPDPKTYRFVIGQGGSQINTIRKQTGCRINVPKDQARG--EAIEIKGSKDGLEKAKEMI  1156
             IL        +IG+GGS I  IR++TG +I +P  ++ G    + I G+ + +E AK +I
Sbjct  4     ILVPSSLVGLIIGKGGSNIKEIREETGAKIQIPPSESEGNERIVTITGTPEAVEAAKALI  63

Query  1157  LD  1158
              +
Sbjct  64    EE  65


 Score = 60.0 bits (146),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query  904  TVTVDIPPVQHRLLIGRGGETRRGIESQFNVTLDIPKQGSGRTD--IKLKGPSNAVESAK  961
            TV + +P     L+IG+GG   + I  +    + IP   S   +  + + G   AVE+AK
Sbjct  1    TVEILVPSSLVGLIIGKGGSNIKEIREETGAKIQIPPSESEGNERIVTITGTPEAVEAAK  60

Query  962  EHILA  966
              I  
Sbjct  61   ALIEE  65



Lambda      K        H        a         alpha
   0.315    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1496767136


Query= TCONS_00010985

Length=1310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459630 pfam00013, KH_1, KH domain. KH motifs bind RNA in vitr...  66.5    3e-14


>CDD:459630 pfam00013, KH_1, KH domain.  KH motifs bind RNA in vitro. Autoantibodies 
to Nova, a KH domain protein, cause paraneoplastic 
opsoclonus ataxia.
Length=65

 Score = 66.5 bits (163),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 21/62 (34%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query  1240  ILPDPKTYRFVIGQGGSQINTIRKQTGCRINVPKDQARG--EAIEIKGSKDGLEKAKEMI  1297
             IL        +IG+GGS I  IR++TG +I +P  ++ G    + I G+ + +E AK +I
Sbjct  4     ILVPSSLVGLIIGKGGSNIKEIREETGAKIQIPPSESEGNERIVTITGTPEAVEAAKALI  63

Query  1298  LD  1299
              +
Sbjct  64    EE  65


 Score = 61.1 bits (149),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query  1045  TVTVDIPPVQHRLLIGRGGETRRGIESQFNVTLDIPKQGSGRTD--IKLKGPSNAVESAK  1102
             TV + +P     L+IG+GG   + I  +    + IP   S   +  + + G   AVE+AK
Sbjct  1     TVEILVPSSLVGLIIGKGGSNIKEIREETGAKIQIPPSESEGNERIVTITGTPEAVEAAK  60

Query  1103  EHILA  1107
               I  
Sbjct  61    ALIEE  65


 Score = 56.9 bits (138),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query  888  SATVSVAQSQIPSLIGQRGREMDKLRADTGAQIDVPGANDAPDASGRVQIKIKGTKQQVE  947
            +  + V  S +  +IG+ G  + ++R +TGA+I +P    +        + I GT + VE
Sbjct  1    TVEILVPSSLVGLIIGKGGSNIKEIREETGAKIQIP---PSESEGNERIVTITGTPEAVE  57

Query  948  EAKKILLQ  955
             AK ++ +
Sbjct  58   AAKALIEE  65



Lambda      K        H        a         alpha
   0.314    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1668439200


Query= TCONS_00017455

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00010986

Length=958
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      244     6e-74


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 244 bits (624),  Expect = 6e-74, Method: Composition-based stats.
 Identities = 104/364 (29%), Positives = 166/364 (46%), Gaps = 59/364 (16%)

Query  594  TGLTNFGVTCYMNSTIQCLSATVMLSKFFIDNRFRFYVQKNWKGSQGIMPGLFANLIRSL  653
            TGL N G TCYMNS +Q L +      + +           +     +      +L ++L
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLL-RISPLSEDSRYNKDINL-LCALRDLFKAL  58

Query  654  WKNDV-EVIMPTSFRNFCGRLNQEWAIDRQQDAKEFFDFVVDCLHEDLNINWQRTPLRPL  712
             KN     + P  F+   G+LN +++  +QQDA+EF  F++D LHEDLN           
Sbjct  59   QKNSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLN-----------  107

Query  713  TFEEEMQRERMPVPKVSKIEWDRYCHREESFISSLFAGQHASRLRCTTCKRTSTTYEAFY  772
                                   +    ES I+ LF GQ  SRL+C +C   S T+E F 
Sbjct  108  ---------------------GNHSTENESLITDLFRGQLKSRLKCLSCGEVSETFEPFS  146

Query  773  SISVEIP----HTGTGDIYQCLRSYCQEELLSGDEVWKCPYCKCQRVATKQIIITRAPQI  828
             +S+ IP       T  +  C   + + E L  +E + C  C C++ A KQ+ I+R P +
Sbjct  147  DLSLPIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPV  206

Query  829  LVIHFKRFSASKTQSARKIHTPIDFPLHGLRMDDFVISANPGSATDDRAADMTSATTGPF  888
            L+IH KRFS +++    K++T ++FPL  L +  ++         + +            
Sbjct  207  LIIHLKRFSYNRSTWE-KLNTEVEFPL-ELDLSRYLAEELKPKTNNLQ------------  252

Query  889  TYDAYGVLRHIGSTMGSGHYISLVRDAQRQCWRKFDDERATDFNPRDLRFKDRLQNEQAY  948
             Y    V+ H GS + SGHYI+ ++  +   W KFDDE+ T     ++  +  + +  AY
Sbjct  253  DYRLVAVVVHSGS-LSSGHYIAYIKAYENNRWYKFDDEKVT-----EVDEETAVLSSSAY  306

Query  949  IVFY  952
            I+FY
Sbjct  307  ILFY  310



Lambda      K        H        a         alpha
   0.316    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1220485112


Query= TCONS_00010987

Length=958
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      244     6e-74


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 244 bits (624),  Expect = 6e-74, Method: Composition-based stats.
 Identities = 104/364 (29%), Positives = 166/364 (46%), Gaps = 59/364 (16%)

Query  594  TGLTNFGVTCYMNSTIQCLSATVMLSKFFIDNRFRFYVQKNWKGSQGIMPGLFANLIRSL  653
            TGL N G TCYMNS +Q L +      + +           +     +      +L ++L
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLL-RISPLSEDSRYNKDINL-LCALRDLFKAL  58

Query  654  WKNDV-EVIMPTSFRNFCGRLNQEWAIDRQQDAKEFFDFVVDCLHEDLNINWQRTPLRPL  712
             KN     + P  F+   G+LN +++  +QQDA+EF  F++D LHEDLN           
Sbjct  59   QKNSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLN-----------  107

Query  713  TFEEEMQRERMPVPKVSKIEWDRYCHREESFISSLFAGQHASRLRCTTCKRTSTTYEAFY  772
                                   +    ES I+ LF GQ  SRL+C +C   S T+E F 
Sbjct  108  ---------------------GNHSTENESLITDLFRGQLKSRLKCLSCGEVSETFEPFS  146

Query  773  SISVEIP----HTGTGDIYQCLRSYCQEELLSGDEVWKCPYCKCQRVATKQIIITRAPQI  828
             +S+ IP       T  +  C   + + E L  +E + C  C C++ A KQ+ I+R P +
Sbjct  147  DLSLPIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPV  206

Query  829  LVIHFKRFSASKTQSARKIHTPIDFPLHGLRMDDFVISANPGSATDDRAADMTSATTGPF  888
            L+IH KRFS +++    K++T ++FPL  L +  ++         + +            
Sbjct  207  LIIHLKRFSYNRSTWE-KLNTEVEFPL-ELDLSRYLAEELKPKTNNLQ------------  252

Query  889  TYDAYGVLRHIGSTMGSGHYISLVRDAQRQCWRKFDDERATDFNPRDLRFKDRLQNEQAY  948
             Y    V+ H GS + SGHYI+ ++  +   W KFDDE+ T     ++  +  + +  AY
Sbjct  253  DYRLVAVVVHSGS-LSSGHYIAYIKAYENNRWYKFDDEKVT-----EVDEETAVLSSSAY  306

Query  949  IVFY  952
            I+FY
Sbjct  307  ILFY  310



Lambda      K        H        a         alpha
   0.316    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1220485112


Query= TCONS_00010988

Length=640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426221 pfam01363, FYVE, FYVE zinc finger. The FYVE zinc finge...  105     2e-28


>CDD:426221 pfam01363, FYVE, FYVE zinc finger.  The FYVE zinc finger is named 
after four proteins that it has been found in: Fab1, YOTB/ZK632.12, 
Vac1, and EEA1. The FYVE finger has been shown 
to bind two Zn++ ions. The FYVE finger has eight potential zinc 
coordinating cysteine positions. Many members of this family 
also include two histidines in a motif R+HHC+XCG, where 
+ represents a charged residue and X any residue. We have included 
members which do not conserve these histidine residues 
but are clearly related.
Length=68

 Score = 105 bits (265),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 41/68 (60%), Gaps = 4/68 (6%)

Query  74   PEWI---DSDVCMRCRTPFSFMNRKHHCRNCGNVFDAQCSSKT-LPLPHLGILQPVRVDD  129
            P W+    + VCM C  PF+F  R+HHCRNCG VF + CSSK    LP LG  +PVRV D
Sbjct  1    PVWVPDSSATVCMICSKPFTFFRRRHHCRNCGRVFCSACSSKKISLLPELGSNKPVRVCD  60

Query  130  GCYVKLTS  137
             CY  L  
Sbjct  61   ACYDTLQK  68



Lambda      K        H        a         alpha
   0.310    0.127    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 806710130


Query= TCONS_00010989

Length=729
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395638 pfam00790, VHS, VHS domain. Domain present in VPS-27, ...  160     1e-46
CDD:426221 pfam01363, FYVE, FYVE zinc finger. The FYVE zinc finge...  105     3e-28


>CDD:395638 pfam00790, VHS, VHS domain.  Domain present in VPS-27, Hrs and 
STAM.
Length=136

 Score = 160 bits (407),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 60/136 (44%), Positives = 87/136 (64%), Gaps = 2/136 (1%)

Query  10   PLDEQVERATSSSL--EDMALNLEISDLIRSKSVQPKEAMRSLKRRLENRNPNVQIATLK  67
            PL+  +++AT  SL  ED +L L+I DLI      PKEA+R +K+R+ + NP+V +  L 
Sbjct  1    PLERWIDKATDPSLREEDWSLILDICDLINETETGPKEAVRLIKKRINSPNPHVALLALT  60

Query  68   LTDTCVKNGGSHFLAEIASREFMDNLVSLLTTEGAPLNTDVKEKMLELIQDWAMAAQGRM  127
            L D CVKN GS F  EIAS+EF++ LV L+  +       VK+K+LELIQ+WA A +   
Sbjct  61   LLDACVKNCGSKFHLEIASKEFLNELVKLIPNKPYGKPAKVKKKILELIQEWADAFKNDP  120

Query  128  DLNYLGETYRKLQNEG  143
            DL Y+ + Y+ L+ +G
Sbjct  121  DLKYIRDMYKLLKRKG  136


>CDD:426221 pfam01363, FYVE, FYVE zinc finger.  The FYVE zinc finger is named 
after four proteins that it has been found in: Fab1, YOTB/ZK632.12, 
Vac1, and EEA1. The FYVE finger has been shown 
to bind two Zn++ ions. The FYVE finger has eight potential zinc 
coordinating cysteine positions. Many members of this family 
also include two histidines in a motif R+HHC+XCG, where 
+ represents a charged residue and X any residue. We have included 
members which do not conserve these histidine residues 
but are clearly related.
Length=68

 Score = 105 bits (265),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 41/68 (60%), Gaps = 4/68 (6%)

Query  163  PEWI---DSDVCMRCRTPFSFMNRKHHCRNCGNVFDAQCSSKT-LPLPHLGILQPVRVDD  218
            P W+    + VCM C  PF+F  R+HHCRNCG VF + CSSK    LP LG  +PVRV D
Sbjct  1    PVWVPDSSATVCMICSKPFTFFRRRHHCRNCGRVFCSACSSKKISLLPELGSNKPVRVCD  60

Query  219  GCYVKLTS  226
             CY  L  
Sbjct  61   ACYDTLQK  68



Lambda      K        H        a         alpha
   0.310    0.127    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 924021520


Query= TCONS_00017456

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426221 pfam01363, FYVE, FYVE zinc finger. The FYVE zinc finge...  93.6    5e-24


>CDD:426221 pfam01363, FYVE, FYVE zinc finger.  The FYVE zinc finger is named 
after four proteins that it has been found in: Fab1, YOTB/ZK632.12, 
Vac1, and EEA1. The FYVE finger has been shown 
to bind two Zn++ ions. The FYVE finger has eight potential zinc 
coordinating cysteine positions. Many members of this family 
also include two histidines in a motif R+HHC+XCG, where 
+ represents a charged residue and X any residue. We have included 
members which do not conserve these histidine residues 
but are clearly related.
Length=68

 Score = 93.6 bits (233),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 35/56 (63%), Gaps = 1/56 (2%)

Query  1   MRCRTPFSFMNRKHHCRNCGNVFDAQCSSKT-LPLPHLGILQPVRVDDGCYVKLTS  55
           M C  PF+F  R+HHCRNCG VF + CSSK    LP LG  +PVRV D CY  L  
Sbjct  13  MICSKPFTFFRRRHHCRNCGRVFCSACSSKKISLLPELGSNKPVRVCDACYDTLQK  68



Lambda      K        H        a         alpha
   0.309    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 696403448


Query= TCONS_00010990

Length=729
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395638 pfam00790, VHS, VHS domain. Domain present in VPS-27, ...  160     1e-46
CDD:426221 pfam01363, FYVE, FYVE zinc finger. The FYVE zinc finge...  105     3e-28


>CDD:395638 pfam00790, VHS, VHS domain.  Domain present in VPS-27, Hrs and 
STAM.
Length=136

 Score = 160 bits (407),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 60/136 (44%), Positives = 87/136 (64%), Gaps = 2/136 (1%)

Query  10   PLDEQVERATSSSL--EDMALNLEISDLIRSKSVQPKEAMRSLKRRLENRNPNVQIATLK  67
            PL+  +++AT  SL  ED +L L+I DLI      PKEA+R +K+R+ + NP+V +  L 
Sbjct  1    PLERWIDKATDPSLREEDWSLILDICDLINETETGPKEAVRLIKKRINSPNPHVALLALT  60

Query  68   LTDTCVKNGGSHFLAEIASREFMDNLVSLLTTEGAPLNTDVKEKMLELIQDWAMAAQGRM  127
            L D CVKN GS F  EIAS+EF++ LV L+  +       VK+K+LELIQ+WA A +   
Sbjct  61   LLDACVKNCGSKFHLEIASKEFLNELVKLIPNKPYGKPAKVKKKILELIQEWADAFKNDP  120

Query  128  DLNYLGETYRKLQNEG  143
            DL Y+ + Y+ L+ +G
Sbjct  121  DLKYIRDMYKLLKRKG  136


>CDD:426221 pfam01363, FYVE, FYVE zinc finger.  The FYVE zinc finger is named 
after four proteins that it has been found in: Fab1, YOTB/ZK632.12, 
Vac1, and EEA1. The FYVE finger has been shown 
to bind two Zn++ ions. The FYVE finger has eight potential zinc 
coordinating cysteine positions. Many members of this family 
also include two histidines in a motif R+HHC+XCG, where 
+ represents a charged residue and X any residue. We have included 
members which do not conserve these histidine residues 
but are clearly related.
Length=68

 Score = 105 bits (265),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 41/68 (60%), Gaps = 4/68 (6%)

Query  163  PEWI---DSDVCMRCRTPFSFMNRKHHCRNCGNVFDAQCSSKT-LPLPHLGILQPVRVDD  218
            P W+    + VCM C  PF+F  R+HHCRNCG VF + CSSK    LP LG  +PVRV D
Sbjct  1    PVWVPDSSATVCMICSKPFTFFRRRHHCRNCGRVFCSACSSKKISLLPELGSNKPVRVCD  60

Query  219  GCYVKLTS  226
             CY  L  
Sbjct  61   ACYDTLQK  68



Lambda      K        H        a         alpha
   0.310    0.127    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 924021520


Query= TCONS_00017457

Length=1024


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1313932928


Query= TCONS_00010992

Length=991
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431003 pfam10033, ATG13, Autophagy-related protein 13. Member...  314     5e-101


>CDD:431003 pfam10033, ATG13, Autophagy-related protein 13.  Members of this 
family of phosphoproteins are involved in cytoplasm to vacuole 
transport (Cvt), and more specifically in Cvt vesicle 
formation. They are probably involved in the switching machinery 
regulating the conversion between the Cvt pathway and 
autophagy. Finally, ATG13 is also required for glycogen storage.
Length=228

 Score = 314 bits (806),  Expect = 5e-101, Method: Composition-based stats.
 Identities = 114/243 (47%), Positives = 156/243 (64%), Gaps = 19/243 (8%)

Query  77   ITNYHTKAALIILHSRVDLPPSYNKGSDTPRVNRWFNVEIEDTDILREQLRIWRTCDAIE  136
            I N+ TKAAL+IL SR++LPPS + GS + +VN+WFN+E +DTD+ RE+LR+WR+CD+  
Sbjct  1    IQNFFTKAALLILQSRLNLPPSSS-GSGSKKVNKWFNLETDDTDLFREELRLWRSCDS-L  58

Query  137  NRPPPLIIETYLETKGLTNNQSLVILDENGKRWDVLEALTASGQASPVRPPHSNSDDVIL  196
            +  PPL+IETYL+   L+ NQSLV+ D++GKRWDV +                   +++L
Sbjct  59   SENPPLVIETYLDLSDLSPNQSLVLRDDDGKRWDVDK-------------GGGKKTEIVL  105

Query  197  ERWRVELGSASSKPPSDLGSIL--PTVYKKSIVLFRSLFTYSKFLPAWKFAKR-NGRLRS  253
            ERW +EL   S   PSD GSIL  PTVYKK+IVLFRSL+T  + LPAWK  KR N    S
Sbjct  106  ERWLIELDPTSPTDPSDFGSILELPTVYKKAIVLFRSLYTLLRLLPAWKLYKRLNKSKGS  165

Query  254  NPALQIRYRILDGRTASDRRQVDHLTVPLYEGNTKV-VETYSFGVTDSPAGPFSVEVTYR  312
            +PAL++  RILDG      +  D L+ PL    + V +E Y F   ++P G   + V+YR
Sbjct  166  HPALKLGCRILDGSKPILSKGRDGLSKPLIPSYSNVHLEQYKFTPIETPLGRLRISVSYR  225

Query  313  TNC  315
             +C
Sbjct  226  NDC  228



Lambda      K        H        a         alpha
   0.310    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1267209020


Query= TCONS_00010993

Length=971
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431003 pfam10033, ATG13, Autophagy-related protein 13. Member...  313     6e-101


>CDD:431003 pfam10033, ATG13, Autophagy-related protein 13.  Members of this 
family of phosphoproteins are involved in cytoplasm to vacuole 
transport (Cvt), and more specifically in Cvt vesicle 
formation. They are probably involved in the switching machinery 
regulating the conversion between the Cvt pathway and 
autophagy. Finally, ATG13 is also required for glycogen storage.
Length=228

 Score = 313 bits (804),  Expect = 6e-101, Method: Composition-based stats.
 Identities = 114/243 (47%), Positives = 156/243 (64%), Gaps = 19/243 (8%)

Query  57   ITNYHTKAALIILHSRVDLPPSYNKGSDTPRVNRWFNVEIEDTDILREQLRIWRTCDAIE  116
            I N+ TKAAL+IL SR++LPPS + GS + +VN+WFN+E +DTD+ RE+LR+WR+CD+  
Sbjct  1    IQNFFTKAALLILQSRLNLPPSSS-GSGSKKVNKWFNLETDDTDLFREELRLWRSCDS-L  58

Query  117  NRPPPLIIETYLETKGLTNNQSLVILDENGKRWDVLEALTASGQASPVRPPHSNSDDVIL  176
            +  PPL+IETYL+   L+ NQSLV+ D++GKRWDV +                   +++L
Sbjct  59   SENPPLVIETYLDLSDLSPNQSLVLRDDDGKRWDVDK-------------GGGKKTEIVL  105

Query  177  ERWRVELGSASSKPPSDLGSIL--PTVYKKSIVLFRSLFTYSKFLPAWKFAKR-NGRLRS  233
            ERW +EL   S   PSD GSIL  PTVYKK+IVLFRSL+T  + LPAWK  KR N    S
Sbjct  106  ERWLIELDPTSPTDPSDFGSILELPTVYKKAIVLFRSLYTLLRLLPAWKLYKRLNKSKGS  165

Query  234  NPALQIRYRILDGRTASDRRQVDHLTVPLYEGNTKV-VETYSFGVTDSPAGPFSVEVTYR  292
            +PAL++  RILDG      +  D L+ PL    + V +E Y F   ++P G   + V+YR
Sbjct  166  HPALKLGCRILDGSKPILSKGRDGLSKPLIPSYSNVHLEQYKFTPIETPLGRLRISVSYR  225

Query  293  TNC  295
             +C
Sbjct  226  NDC  228



Lambda      K        H        a         alpha
   0.310    0.126    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1238891500


Query= TCONS_00010994

Length=991
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431003 pfam10033, ATG13, Autophagy-related protein 13. Member...  314     5e-101


>CDD:431003 pfam10033, ATG13, Autophagy-related protein 13.  Members of this 
family of phosphoproteins are involved in cytoplasm to vacuole 
transport (Cvt), and more specifically in Cvt vesicle 
formation. They are probably involved in the switching machinery 
regulating the conversion between the Cvt pathway and 
autophagy. Finally, ATG13 is also required for glycogen storage.
Length=228

 Score = 314 bits (806),  Expect = 5e-101, Method: Composition-based stats.
 Identities = 114/243 (47%), Positives = 156/243 (64%), Gaps = 19/243 (8%)

Query  77   ITNYHTKAALIILHSRVDLPPSYNKGSDTPRVNRWFNVEIEDTDILREQLRIWRTCDAIE  136
            I N+ TKAAL+IL SR++LPPS + GS + +VN+WFN+E +DTD+ RE+LR+WR+CD+  
Sbjct  1    IQNFFTKAALLILQSRLNLPPSSS-GSGSKKVNKWFNLETDDTDLFREELRLWRSCDS-L  58

Query  137  NRPPPLIIETYLETKGLTNNQSLVILDENGKRWDVLEALTASGQASPVRPPHSNSDDVIL  196
            +  PPL+IETYL+   L+ NQSLV+ D++GKRWDV +                   +++L
Sbjct  59   SENPPLVIETYLDLSDLSPNQSLVLRDDDGKRWDVDK-------------GGGKKTEIVL  105

Query  197  ERWRVELGSASSKPPSDLGSIL--PTVYKKSIVLFRSLFTYSKFLPAWKFAKR-NGRLRS  253
            ERW +EL   S   PSD GSIL  PTVYKK+IVLFRSL+T  + LPAWK  KR N    S
Sbjct  106  ERWLIELDPTSPTDPSDFGSILELPTVYKKAIVLFRSLYTLLRLLPAWKLYKRLNKSKGS  165

Query  254  NPALQIRYRILDGRTASDRRQVDHLTVPLYEGNTKV-VETYSFGVTDSPAGPFSVEVTYR  312
            +PAL++  RILDG      +  D L+ PL    + V +E Y F   ++P G   + V+YR
Sbjct  166  HPALKLGCRILDGSKPILSKGRDGLSKPLIPSYSNVHLEQYKFTPIETPLGRLRISVSYR  225

Query  313  TNC  315
             +C
Sbjct  226  NDC  228



Lambda      K        H        a         alpha
   0.310    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1267209020


Query= TCONS_00017458

Length=991
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431003 pfam10033, ATG13, Autophagy-related protein 13. Member...  314     5e-101


>CDD:431003 pfam10033, ATG13, Autophagy-related protein 13.  Members of this 
family of phosphoproteins are involved in cytoplasm to vacuole 
transport (Cvt), and more specifically in Cvt vesicle 
formation. They are probably involved in the switching machinery 
regulating the conversion between the Cvt pathway and 
autophagy. Finally, ATG13 is also required for glycogen storage.
Length=228

 Score = 314 bits (806),  Expect = 5e-101, Method: Composition-based stats.
 Identities = 114/243 (47%), Positives = 156/243 (64%), Gaps = 19/243 (8%)

Query  77   ITNYHTKAALIILHSRVDLPPSYNKGSDTPRVNRWFNVEIEDTDILREQLRIWRTCDAIE  136
            I N+ TKAAL+IL SR++LPPS + GS + +VN+WFN+E +DTD+ RE+LR+WR+CD+  
Sbjct  1    IQNFFTKAALLILQSRLNLPPSSS-GSGSKKVNKWFNLETDDTDLFREELRLWRSCDS-L  58

Query  137  NRPPPLIIETYLETKGLTNNQSLVILDENGKRWDVLEALTASGQASPVRPPHSNSDDVIL  196
            +  PPL+IETYL+   L+ NQSLV+ D++GKRWDV +                   +++L
Sbjct  59   SENPPLVIETYLDLSDLSPNQSLVLRDDDGKRWDVDK-------------GGGKKTEIVL  105

Query  197  ERWRVELGSASSKPPSDLGSIL--PTVYKKSIVLFRSLFTYSKFLPAWKFAKR-NGRLRS  253
            ERW +EL   S   PSD GSIL  PTVYKK+IVLFRSL+T  + LPAWK  KR N    S
Sbjct  106  ERWLIELDPTSPTDPSDFGSILELPTVYKKAIVLFRSLYTLLRLLPAWKLYKRLNKSKGS  165

Query  254  NPALQIRYRILDGRTASDRRQVDHLTVPLYEGNTKV-VETYSFGVTDSPAGPFSVEVTYR  312
            +PAL++  RILDG      +  D L+ PL    + V +E Y F   ++P G   + V+YR
Sbjct  166  HPALKLGCRILDGSKPILSKGRDGLSKPLIPSYSNVHLEQYKFTPIETPLGRLRISVSYR  225

Query  313  TNC  315
             +C
Sbjct  226  NDC  228



Lambda      K        H        a         alpha
   0.310    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1267209020


Query= TCONS_00010995

Length=971
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431003 pfam10033, ATG13, Autophagy-related protein 13. Member...  313     6e-101


>CDD:431003 pfam10033, ATG13, Autophagy-related protein 13.  Members of this 
family of phosphoproteins are involved in cytoplasm to vacuole 
transport (Cvt), and more specifically in Cvt vesicle 
formation. They are probably involved in the switching machinery 
regulating the conversion between the Cvt pathway and 
autophagy. Finally, ATG13 is also required for glycogen storage.
Length=228

 Score = 313 bits (804),  Expect = 6e-101, Method: Composition-based stats.
 Identities = 114/243 (47%), Positives = 156/243 (64%), Gaps = 19/243 (8%)

Query  57   ITNYHTKAALIILHSRVDLPPSYNKGSDTPRVNRWFNVEIEDTDILREQLRIWRTCDAIE  116
            I N+ TKAAL+IL SR++LPPS + GS + +VN+WFN+E +DTD+ RE+LR+WR+CD+  
Sbjct  1    IQNFFTKAALLILQSRLNLPPSSS-GSGSKKVNKWFNLETDDTDLFREELRLWRSCDS-L  58

Query  117  NRPPPLIIETYLETKGLTNNQSLVILDENGKRWDVLEALTASGQASPVRPPHSNSDDVIL  176
            +  PPL+IETYL+   L+ NQSLV+ D++GKRWDV +                   +++L
Sbjct  59   SENPPLVIETYLDLSDLSPNQSLVLRDDDGKRWDVDK-------------GGGKKTEIVL  105

Query  177  ERWRVELGSASSKPPSDLGSIL--PTVYKKSIVLFRSLFTYSKFLPAWKFAKR-NGRLRS  233
            ERW +EL   S   PSD GSIL  PTVYKK+IVLFRSL+T  + LPAWK  KR N    S
Sbjct  106  ERWLIELDPTSPTDPSDFGSILELPTVYKKAIVLFRSLYTLLRLLPAWKLYKRLNKSKGS  165

Query  234  NPALQIRYRILDGRTASDRRQVDHLTVPLYEGNTKV-VETYSFGVTDSPAGPFSVEVTYR  292
            +PAL++  RILDG      +  D L+ PL    + V +E Y F   ++P G   + V+YR
Sbjct  166  HPALKLGCRILDGSKPILSKGRDGLSKPLIPSYSNVHLEQYKFTPIETPLGRLRISVSYR  225

Query  293  TNC  295
             +C
Sbjct  226  NDC  228



Lambda      K        H        a         alpha
   0.310    0.126    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1238891500


Query= TCONS_00010997

Length=991
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431003 pfam10033, ATG13, Autophagy-related protein 13. Member...  314     5e-101


>CDD:431003 pfam10033, ATG13, Autophagy-related protein 13.  Members of this 
family of phosphoproteins are involved in cytoplasm to vacuole 
transport (Cvt), and more specifically in Cvt vesicle 
formation. They are probably involved in the switching machinery 
regulating the conversion between the Cvt pathway and 
autophagy. Finally, ATG13 is also required for glycogen storage.
Length=228

 Score = 314 bits (806),  Expect = 5e-101, Method: Composition-based stats.
 Identities = 114/243 (47%), Positives = 156/243 (64%), Gaps = 19/243 (8%)

Query  77   ITNYHTKAALIILHSRVDLPPSYNKGSDTPRVNRWFNVEIEDTDILREQLRIWRTCDAIE  136
            I N+ TKAAL+IL SR++LPPS + GS + +VN+WFN+E +DTD+ RE+LR+WR+CD+  
Sbjct  1    IQNFFTKAALLILQSRLNLPPSSS-GSGSKKVNKWFNLETDDTDLFREELRLWRSCDS-L  58

Query  137  NRPPPLIIETYLETKGLTNNQSLVILDENGKRWDVLEALTASGQASPVRPPHSNSDDVIL  196
            +  PPL+IETYL+   L+ NQSLV+ D++GKRWDV +                   +++L
Sbjct  59   SENPPLVIETYLDLSDLSPNQSLVLRDDDGKRWDVDK-------------GGGKKTEIVL  105

Query  197  ERWRVELGSASSKPPSDLGSIL--PTVYKKSIVLFRSLFTYSKFLPAWKFAKR-NGRLRS  253
            ERW +EL   S   PSD GSIL  PTVYKK+IVLFRSL+T  + LPAWK  KR N    S
Sbjct  106  ERWLIELDPTSPTDPSDFGSILELPTVYKKAIVLFRSLYTLLRLLPAWKLYKRLNKSKGS  165

Query  254  NPALQIRYRILDGRTASDRRQVDHLTVPLYEGNTKV-VETYSFGVTDSPAGPFSVEVTYR  312
            +PAL++  RILDG      +  D L+ PL    + V +E Y F   ++P G   + V+YR
Sbjct  166  HPALKLGCRILDGSKPILSKGRDGLSKPLIPSYSNVHLEQYKFTPIETPLGRLRISVSYR  225

Query  313  TNC  315
             +C
Sbjct  226  NDC  228



Lambda      K        H        a         alpha
   0.310    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1267209020


Query= TCONS_00017461

Length=991
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431003 pfam10033, ATG13, Autophagy-related protein 13. Member...  314     5e-101


>CDD:431003 pfam10033, ATG13, Autophagy-related protein 13.  Members of this 
family of phosphoproteins are involved in cytoplasm to vacuole 
transport (Cvt), and more specifically in Cvt vesicle 
formation. They are probably involved in the switching machinery 
regulating the conversion between the Cvt pathway and 
autophagy. Finally, ATG13 is also required for glycogen storage.
Length=228

 Score = 314 bits (806),  Expect = 5e-101, Method: Composition-based stats.
 Identities = 114/243 (47%), Positives = 156/243 (64%), Gaps = 19/243 (8%)

Query  77   ITNYHTKAALIILHSRVDLPPSYNKGSDTPRVNRWFNVEIEDTDILREQLRIWRTCDAIE  136
            I N+ TKAAL+IL SR++LPPS + GS + +VN+WFN+E +DTD+ RE+LR+WR+CD+  
Sbjct  1    IQNFFTKAALLILQSRLNLPPSSS-GSGSKKVNKWFNLETDDTDLFREELRLWRSCDS-L  58

Query  137  NRPPPLIIETYLETKGLTNNQSLVILDENGKRWDVLEALTASGQASPVRPPHSNSDDVIL  196
            +  PPL+IETYL+   L+ NQSLV+ D++GKRWDV +                   +++L
Sbjct  59   SENPPLVIETYLDLSDLSPNQSLVLRDDDGKRWDVDK-------------GGGKKTEIVL  105

Query  197  ERWRVELGSASSKPPSDLGSIL--PTVYKKSIVLFRSLFTYSKFLPAWKFAKR-NGRLRS  253
            ERW +EL   S   PSD GSIL  PTVYKK+IVLFRSL+T  + LPAWK  KR N    S
Sbjct  106  ERWLIELDPTSPTDPSDFGSILELPTVYKKAIVLFRSLYTLLRLLPAWKLYKRLNKSKGS  165

Query  254  NPALQIRYRILDGRTASDRRQVDHLTVPLYEGNTKV-VETYSFGVTDSPAGPFSVEVTYR  312
            +PAL++  RILDG      +  D L+ PL    + V +E Y F   ++P G   + V+YR
Sbjct  166  HPALKLGCRILDGSKPILSKGRDGLSKPLIPSYSNVHLEQYKFTPIETPLGRLRISVSYR  225

Query  313  TNC  315
             +C
Sbjct  226  NDC  228



Lambda      K        H        a         alpha
   0.310    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1267209020


Query= TCONS_00017460

Length=971
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431003 pfam10033, ATG13, Autophagy-related protein 13. Member...  313     6e-101


>CDD:431003 pfam10033, ATG13, Autophagy-related protein 13.  Members of this 
family of phosphoproteins are involved in cytoplasm to vacuole 
transport (Cvt), and more specifically in Cvt vesicle 
formation. They are probably involved in the switching machinery 
regulating the conversion between the Cvt pathway and 
autophagy. Finally, ATG13 is also required for glycogen storage.
Length=228

 Score = 313 bits (804),  Expect = 6e-101, Method: Composition-based stats.
 Identities = 114/243 (47%), Positives = 156/243 (64%), Gaps = 19/243 (8%)

Query  57   ITNYHTKAALIILHSRVDLPPSYNKGSDTPRVNRWFNVEIEDTDILREQLRIWRTCDAIE  116
            I N+ TKAAL+IL SR++LPPS + GS + +VN+WFN+E +DTD+ RE+LR+WR+CD+  
Sbjct  1    IQNFFTKAALLILQSRLNLPPSSS-GSGSKKVNKWFNLETDDTDLFREELRLWRSCDS-L  58

Query  117  NRPPPLIIETYLETKGLTNNQSLVILDENGKRWDVLEALTASGQASPVRPPHSNSDDVIL  176
            +  PPL+IETYL+   L+ NQSLV+ D++GKRWDV +                   +++L
Sbjct  59   SENPPLVIETYLDLSDLSPNQSLVLRDDDGKRWDVDK-------------GGGKKTEIVL  105

Query  177  ERWRVELGSASSKPPSDLGSIL--PTVYKKSIVLFRSLFTYSKFLPAWKFAKR-NGRLRS  233
            ERW +EL   S   PSD GSIL  PTVYKK+IVLFRSL+T  + LPAWK  KR N    S
Sbjct  106  ERWLIELDPTSPTDPSDFGSILELPTVYKKAIVLFRSLYTLLRLLPAWKLYKRLNKSKGS  165

Query  234  NPALQIRYRILDGRTASDRRQVDHLTVPLYEGNTKV-VETYSFGVTDSPAGPFSVEVTYR  292
            +PAL++  RILDG      +  D L+ PL    + V +E Y F   ++P G   + V+YR
Sbjct  166  HPALKLGCRILDGSKPILSKGRDGLSKPLIPSYSNVHLEQYKFTPIETPLGRLRISVSYR  225

Query  293  TNC  295
             +C
Sbjct  226  NDC  228



Lambda      K        H        a         alpha
   0.310    0.126    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1238891500


Query= TCONS_00010998

Length=1429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461879 pfam06333, Med13_C, Mediator complex subunit 13 C-term...  392     3e-126
CDD:465699 pfam18296, MID_MedPIWI, MID domain of medPIWI. MID dom...  187     1e-54 
CDD:463303 pfam11597, Med13_N, Mediator complex subunit 13 N-term...  166     5e-46 


>CDD:461879 pfam06333, Med13_C, Mediator complex subunit 13 C-terminal.  
Mediator is a large complex of up to 33 proteins that is conserved 
from plants through fungi to humans - the number and 
representation of individual subunits varying with species. 
It is arranged into four different sections, a core, a head, 
a tail and a kinase-activity part, and the number of subunits 
within each of these is what varies with species. Overall, 
Mediator regulates the transcriptional activity of RNA polymerase 
II but it would appear that each of the four different 
sections has a slightly different function. Med13 is part 
of the ancillary kinase module, together with Med12, CDK8 and 
CycC, which in yeast is implicated in transcriptional repression, 
though most of this activity is likely attributable 
to the CDK8 kinase. The large Med12 and Med13 proteins are 
required for specific developmental processes in Drosophila, 
zebrafish, and Caenorhabditis elegans but their biochemical 
functions are not understood.
Length=322

 Score = 392 bits (1010),  Expect = 3e-126, Method: Composition-based stats.
 Identities = 149/325 (46%), Positives = 196/325 (60%), Gaps = 17/325 (5%)

Query  1108  CAPPMLIAEPVPKTINFKLAPDSSSPL-QEAKSLHIACSRSYDQRWVSVSWTDNTGTFQR  1166
              APP ++A P+P+TI FKLAP+ SSPL QE   LH+A   S DQRW++ +WTDN G  Q 
Sbjct  1     YAPPFVLAPPLPRTIQFKLAPEPSSPLLQEGSVLHVAYCLSEDQRWLTAAWTDNRGELQE  60

Query  1167  TLSYCLRFQNSNATRNILEVRTEIWAATKMIMEKTQARWKIIIANTEPVDQDEVDTWTSL  1226
             T SYCLR +     R   EV  EIW  T  IM KTQ  W+++IA    +D  E+  W+SL
Sbjct  61    TASYCLRRRRRKKARPRSEVLQEIWEFTLDIMSKTQVPWRLVIAKLGRMDHGELKAWSSL  120

Query  1227  VEQYNTTKPFPSDLTILYVNTTPDLYLEPPPQPLSMSVFNPQISSTPVATPNPSGNA---  1283
             + + N  +P     T++ V   P L L PP      SVF  Q SSTPV+TP  S      
Sbjct  121   LSRENLQRPSILSATLVSVEPDPSLRLMPPAPT-PPSVFGQQSSSTPVSTPQDSSCTHIL  179

Query  1284  -FSPEQPGNAPTPPSGGNAPT-----PTEIPPDAESECLLTDICDESWGIILSHCLNSSP  1337
              FSP   G   TPPSG N P      PT+  P+ + + LL DI DE+WG+ILSH LN+SP
Sbjct  180   VFSPSATG-QSTPPSGPNEPANAPTTPTDSSPEPDPDALLIDITDETWGVILSHRLNNSP  238

Query  1338  HLTDYRPALASGYLLRRKGPTDADGAFAMNVNLIYSQKPASLY----ENLLREIIARYRD  1393
              LT+ +P LASGYL++R G  D D    + VNL+++Q+  S Y    E++LRE++ +YR 
Sbjct  239   SLTELQPPLASGYLVKRPGTADNDCPVFLKVNLLHTQQVPSSYTVLTEDVLREVLEQYRA  298

Query  1394  LATLARARGTRTVQQNTFPWHIATA  1418
             L+ LARARGTR   ++  PWH+A A
Sbjct  299   LSWLARARGTRDR-RSCLPWHLAAA  322


>CDD:465699 pfam18296, MID_MedPIWI, MID domain of medPIWI.  MID domain of 
the medPIWI PIWI/Argonaute module. medPIWI is the core globular 
domain of the Med13 protein. Med13 is one member of the 
CDK8 subcomplex of the Mediator transcriptional coactivator 
complex. The medPIWI module in Med13 is predicted to bind double-stranded 
nucleic acids, triggering the experimentally-observed 
conformational switch in the CDK8 subcomplex which 
regulates the Mediator complex.
Length=192

 Score = 187 bits (476),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 74/193 (38%), Positives = 102/193 (53%), Gaps = 24/193 (12%)

Query  929   KDIYAYCIHPQTAA--EAANDFLERLGLLYSSCNLGQHTRAS--------RSTGF-----  973
             KD+  Y + P   A   AA  F   LG +Y SC LG H+  S        R  GF     
Sbjct  1     KDVAYYVVCPDNDALLSAARTFFRDLGAVYESCKLGTHSPISKVRRDGILRVGGFVPQLS  60

Query  974   DRGMCSWNIGAPGEFNYHYIMQSLKSIC-DKLVTALLKSPP----TRDSVVVYIINPFSH  1028
             D G+  W + + G+ +Y   ++S   +C  +L   L  +P        ++VVYI+NPFS 
Sbjct  61    DDGLSDWFL-SSGDSDYASKLKSYAQVCKHQLGPYLSSNPKDEDTNPPAIVVYIVNPFSD  119

Query  1029  AAALADICSAFYD--LFQKYIDEVE-NQQAGQASELVLQIVPFHFIMSTESLVVPPQAQY  1085
             AAAL+D+CSAF+   L + Y++ ++ N       ELVLQIVP  +I+S +SLVV  QA  
Sbjct  120   AAALSDLCSAFWKLGLLRCYVEMLDSNLPELSRPELVLQIVPIEYILSPDSLVVLDQAHL  179

Query  1086  LSLALEVYSRCPP  1098
              SLA  VYSRC  
Sbjct  180   KSLAFSVYSRCRR  192


>CDD:463303 pfam11597, Med13_N, Mediator complex subunit 13 N-terminal.  
Mediator is a large complex of up to 33 proteins that is conserved 
from plants through fungi to humans - the number and 
representation of individual subunits varying with species. 
It is arranged into four different sections, a core, a head, 
a tail and a kinase-activity part, and the number of subunits 
within each of these is what varies with species. Overall, 
Mediator regulates the transcriptional activity of RNA polymerase 
II but it would appear that each of the four different 
sections has a slightly different function. Med13 is part 
of the ancillary kinase module, together with Med12, CDK8 and 
CycC, which in yeast is implicated in transcriptional repression, 
though most of this activity is likely attributable 
to the CDK8 kinase. The large Med12 and Med13 proteins are 
required for specific developmental processes in Drosophila, 
zebrafish, and Caenorhabditis elegans but their biochemical 
functions are not understood.
Length=314

 Score = 166 bits (423),  Expect = 5e-46, Method: Composition-based stats.
 Identities = 85/270 (31%), Positives = 115/270 (43%), Gaps = 43/270 (16%)

Query  34   LYADPLVVSASGSVTSKELVKNLSAEPVHAATNSQGLQRRQNGPNPPRRTDGHGSSAAIY  93
            L    L  S SG+ T  +L +     P ++             PN P           IY
Sbjct  86   LKGSGLSRSESGTFTPSDLAR----LPDYSK------------PNQPPTQ--------IY  121

Query  94   ASFISAVTGALSLQLIRCNKAIPLGSRTLFTVVAEDYYDNPRIDNDNPAAVPSLTTLQIQ  153
            A F+ AV  ++ L L R   AIP G+RT           +   D++      SL  L   
Sbjct  122  ALFLKAVRKSILLNLSRNRGAIPFGNRT--------LLSSSDSDSEEGEGWWSLLRLDPH  173

Query  154  LTSLGKLTVSLQTISQPGILRLCGPYDTSVGAHNAHPGCDLWLSPSGSIARLVATHSDSQ  213
            LTS G LT+SL TI QPG+LRL              PG  ++L+PSG  ARL++T++   
Sbjct  174  LTSNGDLTLSLSTILQPGLLRLSSYLPLPDELPLL-PGTAVYLAPSGIRARLLSTYTGPL  232

Query  214  NA-SPGHTVANPPNTSNLEEWKALVIEWLGN-YGLPLNSSEDEPWVEVEVWEPFYSRLAG  271
               S    ++ PP       WK L++EWL N +G+ L+  EDE WVEVE      +    
Sbjct  233  TEQSEASLLSLPPG----NSWKELLLEWLKNSHGIDLD-PEDEAWVEVEPNLQHLNGQT-  286

Query  272  EVWRQNEEGASVLPLKRILWPARYCFTRKK  301
                           K ILWPAR CF +  
Sbjct  287  --SSIASFIQGSDNGKTILWPARLCFLQDP  314



Lambda      K        H        a         alpha
   0.314    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1832254600


Query= TCONS_00010999

Length=958
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431003 pfam10033, ATG13, Autophagy-related protein 13. Member...  264     2e-82


>CDD:431003 pfam10033, ATG13, Autophagy-related protein 13.  Members of this 
family of phosphoproteins are involved in cytoplasm to vacuole 
transport (Cvt), and more specifically in Cvt vesicle 
formation. They are probably involved in the switching machinery 
regulating the conversion between the Cvt pathway and 
autophagy. Finally, ATG13 is also required for glycogen storage.
Length=228

 Score = 264 bits (676),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 96/220 (44%), Positives = 132/220 (60%), Gaps = 20/220 (9%)

Query  67   KEAMAKLNQIITFNVEIEDTDILREQLRIWRTCDAIENRPPPLIIETYLETKGLTNNQSL  126
                 K+N+   FN+E +DTD+ RE+LR+WR+CD+  +  PPL+IETYL+   L+ NQSL
Sbjct  25   GSGSKKVNKW--FNLETDDTDLFREELRLWRSCDS-LSENPPLVIETYLDLSDLSPNQSL  81

Query  127  VILDENGKRWDVLEALTASGQASPVRPPHSNSDDVILERWRVELGSASSKPPSDLGSIL-  185
            V+ D++GKRWDV +                   +++LERW +EL   S   PSD GSIL 
Sbjct  82   VLRDDDGKRWDVDK-------------GGGKKTEIVLERWLIELDPTSPTDPSDFGSILE  128

Query  186  -PTVYKKSIVLFRSLFTYSKFLPAWKFAKR-NGRLRSNPALQIRYRILDGRTASDRRQVD  243
             PTVYKK+IVLFRSL+T  + LPAWK  KR N    S+PAL++  RILDG      +  D
Sbjct  129  LPTVYKKAIVLFRSLYTLLRLLPAWKLYKRLNKSKGSHPALKLGCRILDGSKPILSKGRD  188

Query  244  HLTVPLYEGNTKV-VETYSFGVTDSPAGPFSVEVTYRTNC  282
             L+ PL    + V +E Y F   ++P G   + V+YR +C
Sbjct  189  GLSKPLIPSYSNVHLEQYKFTPIETPLGRLRISVSYRNDC  228



Lambda      K        H        a         alpha
   0.310    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1220485112


Query= TCONS_00017462

Length=1258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465699 pfam18296, MID_MedPIWI, MID domain of medPIWI. MID dom...  187     7e-55
CDD:463303 pfam11597, Med13_N, Mediator complex subunit 13 N-term...  168     2e-46
CDD:461879 pfam06333, Med13_C, Mediator complex subunit 13 C-term...  163     9e-45


>CDD:465699 pfam18296, MID_MedPIWI, MID domain of medPIWI.  MID domain of 
the medPIWI PIWI/Argonaute module. medPIWI is the core globular 
domain of the Med13 protein. Med13 is one member of the 
CDK8 subcomplex of the Mediator transcriptional coactivator 
complex. The medPIWI module in Med13 is predicted to bind double-stranded 
nucleic acids, triggering the experimentally-observed 
conformational switch in the CDK8 subcomplex which 
regulates the Mediator complex.
Length=192

 Score = 187 bits (477),  Expect = 7e-55, Method: Composition-based stats.
 Identities = 74/193 (38%), Positives = 102/193 (53%), Gaps = 24/193 (12%)

Query  929   KDIYAYCIHPQTAA--EAANDFLERLGLLYSSCNLGQHTRAS--------RSTGF-----  973
             KD+  Y + P   A   AA  F   LG +Y SC LG H+  S        R  GF     
Sbjct  1     KDVAYYVVCPDNDALLSAARTFFRDLGAVYESCKLGTHSPISKVRRDGILRVGGFVPQLS  60

Query  974   DRGMCSWNIGAPGEFNYHYIMQSLKSIC-DKLVTALLKSPP----TRDSVVVYIINPFSH  1028
             D G+  W + + G+ +Y   ++S   +C  +L   L  +P        ++VVYI+NPFS 
Sbjct  61    DDGLSDWFL-SSGDSDYASKLKSYAQVCKHQLGPYLSSNPKDEDTNPPAIVVYIVNPFSD  119

Query  1029  AAALADICSAFYD--LFQKYIDEVE-NQQAGQASELVLQIVPFHFIMSTESLVVPPQAQY  1085
             AAAL+D+CSAF+   L + Y++ ++ N       ELVLQIVP  +I+S +SLVV  QA  
Sbjct  120   AAALSDLCSAFWKLGLLRCYVEMLDSNLPELSRPELVLQIVPIEYILSPDSLVVLDQAHL  179

Query  1086  LSLALEVYSRCPP  1098
              SLA  VYSRC  
Sbjct  180   KSLAFSVYSRCRR  192


>CDD:463303 pfam11597, Med13_N, Mediator complex subunit 13 N-terminal.  
Mediator is a large complex of up to 33 proteins that is conserved 
from plants through fungi to humans - the number and 
representation of individual subunits varying with species. 
It is arranged into four different sections, a core, a head, 
a tail and a kinase-activity part, and the number of subunits 
within each of these is what varies with species. Overall, 
Mediator regulates the transcriptional activity of RNA polymerase 
II but it would appear that each of the four different 
sections has a slightly different function. Med13 is part 
of the ancillary kinase module, together with Med12, CDK8 and 
CycC, which in yeast is implicated in transcriptional repression, 
though most of this activity is likely attributable 
to the CDK8 kinase. The large Med12 and Med13 proteins are 
required for specific developmental processes in Drosophila, 
zebrafish, and Caenorhabditis elegans but their biochemical 
functions are not understood.
Length=314

 Score = 168 bits (426),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 85/270 (31%), Positives = 115/270 (43%), Gaps = 43/270 (16%)

Query  34   LYADPLVVSASGSVTSKELVKNLSAEPVHAATNSQGLQRRQNGPNPPRRTDGHGSSAAIY  93
            L    L  S SG+ T  +L +     P ++             PN P           IY
Sbjct  86   LKGSGLSRSESGTFTPSDLAR----LPDYSK------------PNQPPTQ--------IY  121

Query  94   ASFISAVTGALSLQLIRCNKAIPLGSRTLFTVVAEDYYDNPRIDNDNPAAVPSLTTLQIQ  153
            A F+ AV  ++ L L R   AIP G+RT           +   D++      SL  L   
Sbjct  122  ALFLKAVRKSILLNLSRNRGAIPFGNRT--------LLSSSDSDSEEGEGWWSLLRLDPH  173

Query  154  LTSLGKLTVSLQTISQPGILRLCGPYDTSVGAHNAHPGCDLWLSPSGSIARLVATHSDSQ  213
            LTS G LT+SL TI QPG+LRL              PG  ++L+PSG  ARL++T++   
Sbjct  174  LTSNGDLTLSLSTILQPGLLRLSSYLPLPDELPLL-PGTAVYLAPSGIRARLLSTYTGPL  232

Query  214  NA-SPGHTVANPPNTSNLEEWKALVIEWLGN-YGLPLNSSEDEPWVEVEVWEPFYSRLAG  271
               S    ++ PP       WK L++EWL N +G+ L+  EDE WVEVE      +    
Sbjct  233  TEQSEASLLSLPPG----NSWKELLLEWLKNSHGIDLD-PEDEAWVEVEPNLQHLNGQT-  286

Query  272  EVWRQNEEGASVLPLKRILWPARYCFTRKK  301
                           K ILWPAR CF +  
Sbjct  287  --SSIASFIQGSDNGKTILWPARLCFLQDP  314


>CDD:461879 pfam06333, Med13_C, Mediator complex subunit 13 C-terminal.  
Mediator is a large complex of up to 33 proteins that is conserved 
from plants through fungi to humans - the number and 
representation of individual subunits varying with species. 
It is arranged into four different sections, a core, a head, 
a tail and a kinase-activity part, and the number of subunits 
within each of these is what varies with species. Overall, 
Mediator regulates the transcriptional activity of RNA polymerase 
II but it would appear that each of the four different 
sections has a slightly different function. Med13 is part 
of the ancillary kinase module, together with Med12, CDK8 and 
CycC, which in yeast is implicated in transcriptional repression, 
though most of this activity is likely attributable 
to the CDK8 kinase. The large Med12 and Med13 proteins are 
required for specific developmental processes in Drosophila, 
zebrafish, and Caenorhabditis elegans but their biochemical 
functions are not understood.
Length=322

 Score = 163 bits (414),  Expect = 9e-45, Method: Composition-based stats.
 Identities = 56/115 (49%), Positives = 71/115 (62%), Gaps = 1/115 (1%)

Query  1108  CAPPMLIAEPVPKTINFKLAPDSSSPL-QEAKSLHIACSRSYDQRWVSVSWTDNTGTFQR  1166
              APP ++A P+P+TI FKLAP+ SSPL QE   LH+A   S DQRW++ +WTDN G  Q 
Sbjct  1     YAPPFVLAPPLPRTIQFKLAPEPSSPLLQEGSVLHVAYCLSEDQRWLTAAWTDNRGELQE  60

Query  1167  TLSYCLRFQNSNATRNILEVRTEIWAATKMIMEKTQARWKIIIANTEPVDQDEVD  1221
             T SYCLR +     R   EV  EIW  T  IM KTQ  W+++IA    +D  E+ 
Sbjct  61    TASYCLRRRRRKKARPRSEVLQEIWEFTLDIMSKTQVPWRLVIAKLGRMDHGELK  115



Lambda      K        H        a         alpha
   0.315    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0722    0.140     1.90     42.6     43.6 

Effective search space used: 1596856000


Query= TCONS_00011000

Length=712
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  180     2e-53
CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-termina...  71.1    2e-15


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 180 bits (460),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 70/208 (34%), Positives = 98/208 (47%), Gaps = 33/208 (16%)

Query  275  KEHVNIVFIGHVDAGKSTLGGSILYVTGNVDERTLEKYKREAKEAGRETWYLSWALDLTN  334
            K H NI  IGHVD GK+TL   +LY TG + +R   K + EA             LD   
Sbjct  1    KRHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEA------------GLDNLP  48

Query  335  EERAKGKTVEVGRGHFKLTVQSPDGPIERHFSILDAPGHKSYVHHMIGGASQADVGVLVI  394
            EER +G T++          +          +++D PGH  +V  +I G +QAD  +LV+
Sbjct  49   EERERGITIKS--AAVSFETKD------YLINLIDTPGHVDFVKEVIRGLAQADGAILVV  100

Query  395  SARKGEYETGFEKGGQTREHALLARNTGVKKIIVAVNKMDDPTVEWSKARFDECTVKVS-  453
             A +G          QTREH  LAR  GV  IIV +NKMD        A  +E   +VS 
Sbjct  101  DAVEG-------VMPQTREHLRLARQLGV-PIIVFINKMDRVD----GAELEEVVEEVSR  148

Query  454  KFLEALGYKKDDLTFMPISAQQTTGIKD  481
            + LE  G   + +  +P SA +  G++ 
Sbjct  149  ELLEKYGEDGEFVPVVPGSALKGEGVQT  176


>CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain. 
 Elongation factor Tu consists of three structural domains, 
this is the third domain. This domain adopts a beta barrel 
structure. This the third domain is involved in binding to 
both charged tRNA and binding to EF-Ts pfam00889.
Length=105

 Score = 71.1 bits (175),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 25/98 (26%), Positives = 39/98 (40%), Gaps = 17/98 (17%)

Query  606  FEAKIRILEL-----KNILTAGYNCVMHVHSAVEEVTFAALLHKCEPGTGRRSKRPPPFA  660
            FEA++ IL             GY    +  +A     F  LLHK +PG        P F 
Sbjct  8    FEAQVYILNKEEGGRHTPFFNGYRPQFYFRTADVTGKFVELLHKLDPG---GVSENPEFV  64

Query  661  SKGQTIIARLEVISSAGAVCVERFEDYNQMGRFTLRDQ  698
              G  +I  +E+I     + +E+ +      RF +R+ 
Sbjct  65   MPGDNVIVTVELIKP---IALEKGQ------RFAIREG  93



Lambda      K        H        a         alpha
   0.312    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 912895010


Query= TCONS_00017463

Length=712
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  180     2e-53
CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-termina...  71.1    2e-15


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 180 bits (460),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 70/208 (34%), Positives = 98/208 (47%), Gaps = 33/208 (16%)

Query  275  KEHVNIVFIGHVDAGKSTLGGSILYVTGNVDERTLEKYKREAKEAGRETWYLSWALDLTN  334
            K H NI  IGHVD GK+TL   +LY TG + +R   K + EA             LD   
Sbjct  1    KRHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEA------------GLDNLP  48

Query  335  EERAKGKTVEVGRGHFKLTVQSPDGPIERHFSILDAPGHKSYVHHMIGGASQADVGVLVI  394
            EER +G T++          +          +++D PGH  +V  +I G +QAD  +LV+
Sbjct  49   EERERGITIKS--AAVSFETKD------YLINLIDTPGHVDFVKEVIRGLAQADGAILVV  100

Query  395  SARKGEYETGFEKGGQTREHALLARNTGVKKIIVAVNKMDDPTVEWSKARFDECTVKVS-  453
             A +G          QTREH  LAR  GV  IIV +NKMD        A  +E   +VS 
Sbjct  101  DAVEG-------VMPQTREHLRLARQLGV-PIIVFINKMDRVD----GAELEEVVEEVSR  148

Query  454  KFLEALGYKKDDLTFMPISAQQTTGIKD  481
            + LE  G   + +  +P SA +  G++ 
Sbjct  149  ELLEKYGEDGEFVPVVPGSALKGEGVQT  176


>CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain. 
 Elongation factor Tu consists of three structural domains, 
this is the third domain. This domain adopts a beta barrel 
structure. This the third domain is involved in binding to 
both charged tRNA and binding to EF-Ts pfam00889.
Length=105

 Score = 71.1 bits (175),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 25/98 (26%), Positives = 39/98 (40%), Gaps = 17/98 (17%)

Query  606  FEAKIRILEL-----KNILTAGYNCVMHVHSAVEEVTFAALLHKCEPGTGRRSKRPPPFA  660
            FEA++ IL             GY    +  +A     F  LLHK +PG        P F 
Sbjct  8    FEAQVYILNKEEGGRHTPFFNGYRPQFYFRTADVTGKFVELLHKLDPG---GVSENPEFV  64

Query  661  SKGQTIIARLEVISSAGAVCVERFEDYNQMGRFTLRDQ  698
              G  +I  +E+I     + +E+ +      RF +R+ 
Sbjct  65   MPGDNVIVTVELIKP---IALEKGQ------RFAIREG  93



Lambda      K        H        a         alpha
   0.312    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 912895010


Query= TCONS_00011001

Length=712
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  180     2e-53
CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-termina...  71.1    2e-15


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 180 bits (460),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 70/208 (34%), Positives = 98/208 (47%), Gaps = 33/208 (16%)

Query  275  KEHVNIVFIGHVDAGKSTLGGSILYVTGNVDERTLEKYKREAKEAGRETWYLSWALDLTN  334
            K H NI  IGHVD GK+TL   +LY TG + +R   K + EA             LD   
Sbjct  1    KRHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEA------------GLDNLP  48

Query  335  EERAKGKTVEVGRGHFKLTVQSPDGPIERHFSILDAPGHKSYVHHMIGGASQADVGVLVI  394
            EER +G T++          +          +++D PGH  +V  +I G +QAD  +LV+
Sbjct  49   EERERGITIKS--AAVSFETKD------YLINLIDTPGHVDFVKEVIRGLAQADGAILVV  100

Query  395  SARKGEYETGFEKGGQTREHALLARNTGVKKIIVAVNKMDDPTVEWSKARFDECTVKVS-  453
             A +G          QTREH  LAR  GV  IIV +NKMD        A  +E   +VS 
Sbjct  101  DAVEG-------VMPQTREHLRLARQLGV-PIIVFINKMDRVD----GAELEEVVEEVSR  148

Query  454  KFLEALGYKKDDLTFMPISAQQTTGIKD  481
            + LE  G   + +  +P SA +  G++ 
Sbjct  149  ELLEKYGEDGEFVPVVPGSALKGEGVQT  176


>CDD:397314 pfam03143, GTP_EFTU_D3, Elongation factor Tu C-terminal domain. 
 Elongation factor Tu consists of three structural domains, 
this is the third domain. This domain adopts a beta barrel 
structure. This the third domain is involved in binding to 
both charged tRNA and binding to EF-Ts pfam00889.
Length=105

 Score = 71.1 bits (175),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 25/98 (26%), Positives = 39/98 (40%), Gaps = 17/98 (17%)

Query  606  FEAKIRILEL-----KNILTAGYNCVMHVHSAVEEVTFAALLHKCEPGTGRRSKRPPPFA  660
            FEA++ IL             GY    +  +A     F  LLHK +PG        P F 
Sbjct  8    FEAQVYILNKEEGGRHTPFFNGYRPQFYFRTADVTGKFVELLHKLDPG---GVSENPEFV  64

Query  661  SKGQTIIARLEVISSAGAVCVERFEDYNQMGRFTLRDQ  698
              G  +I  +E+I     + +E+ +      RF +R+ 
Sbjct  65   MPGDNVIVTVELIKP---IALEKGQ------RFAIREG  93



Lambda      K        H        a         alpha
   0.312    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 912895010


Query= TCONS_00011002

Length=75
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428501 pfam05508, Ran-binding, RanGTP-binding protein. The sm...  113     3e-33


>CDD:428501 pfam05508, Ran-binding, RanGTP-binding protein.  The small Ras-like 
GTPase Ran plays an essential role in the transport of 
macromolecules in and out of the nucleus and has been implicated 
in spindle and nuclear envelope formation during mitosis 
in higher eukaryotes. The S. cerevisiae ORF YGL164c encoding 
a novel RanGTP-binding protein, termed Yrb30p was identified. 
The protein competes with yeast RanBP1 (Yrb1p) for binding 
to the GTP-bound form of yeast Ran (Gsp1p) and is, like 
Yrb1p, able to form trimeric complexes with RanGTP and some 
of the karyopherins.
Length=308

 Score = 113 bits (286),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 58/75 (77%), Gaps = 0/75 (0%)

Query  1   MDVFLTRLTQQAMNYAIRSGIAITANYAIRQSTRLLKNVENNEEREELLALQQRLQSKIQ  60
           MD  L +   QA+ +AIRSGI++ + YAI+Q +R LK V  +++R+EL  LQ++L+SKI+
Sbjct  1   MDELLAKAGSQAVTFAIRSGISLASGYAIKQVSRFLKKVPEDDKRKELEKLQKKLESKIK  60

Query  61  VITPAIDMIELMYAR  75
           +++PAID+IEL+ AR
Sbjct  61  IVSPAIDLIELIAAR  75



Lambda      K        H        a         alpha
   0.321    0.131    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00011003

Length=617
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428501 pfam05508, Ran-binding, RanGTP-binding protein. The sm...  500     2e-176


>CDD:428501 pfam05508, Ran-binding, RanGTP-binding protein.  The small Ras-like 
GTPase Ran plays an essential role in the transport of 
macromolecules in and out of the nucleus and has been implicated 
in spindle and nuclear envelope formation during mitosis 
in higher eukaryotes. The S. cerevisiae ORF YGL164c encoding 
a novel RanGTP-binding protein, termed Yrb30p was identified. 
The protein competes with yeast RanBP1 (Yrb1p) for binding 
to the GTP-bound form of yeast Ran (Gsp1p) and is, like 
Yrb1p, able to form trimeric complexes with RanGTP and some 
of the karyopherins.
Length=308

 Score = 500 bits (1290),  Expect = 2e-176, Method: Composition-based stats.
 Identities = 189/345 (55%), Positives = 242/345 (70%), Gaps = 38/345 (11%)

Query  1    MDVFLTRLTQQAMNYAIRSGIAITANYAIRQSTRLLKNVENNEEREELLALQQRLQSKIQ  60
            MD  L +   QA+ +AIRSGI++ + YAI+Q +R LK V  +++R+EL  LQ++L+SKI+
Sbjct  1    MDELLAKAGSQAVTFAIRSGISLASGYAIKQVSRFLKKVPEDDKRKELEKLQKKLESKIK  60

Query  61   VITPAIDMIELIAARGNTSLESAVSLTKTLRLDMQALGQRLANAAASEELLRKAAKSPRD  120
            +++PAID+IELIAARGNTSLESAV LTK LR ++ + G+RL  AA++EEL R+       
Sbjct  61   IVSPAIDLIELIAARGNTSLESAVPLTKDLRDEIDSFGERLEKAASAEELSRR-------  113

Query  121  RSRNDAEIKLIVRDIKRLLTRIEDAVPLMNLAITTSGARLSTNLPATVSPSRLLQASTFL  180
            R     EIK ++R IK LL RIEDA+PL+NLAITTSGA LST+LP TVSPSRLLQAS FL
Sbjct  114  RENQKEEIKKVIRYIKDLLARIEDAIPLINLAITTSGANLSTSLPPTVSPSRLLQASNFL  173

Query  181  TAGDTQYWMSPTQAIQIGPTFTLSIYMLFAGHVR-PQDEEGIRETTWKEVIHKARVKLRR  239
            T  DTQ+   P++ +Q+GPTFTL++YMLF GH R   DE+  R+ TWKEV+HKARVKL R
Sbjct  174  TKADTQFAADPSRPVQVGPTFTLTLYMLFYGHSRRKYDEDDSRKITWKEVMHKARVKLCR  233

Query  240  VPLDLTSNTLAPTWRAKLPAEARIDEYHYQMLIIEDLDDGRVHSYDEDEPKPEPYEGIPL  299
            VP D                  +  EY Y + IIEDLDDGR H  D++E KP PY+    
Sbjct  234  VPSDWVF---------------KASEYAYHLEIIEDLDDGRYH--DDEEEKPGPYD----  272

Query  300  AGMREILPIHQISKIFYADTSKVLNINTEGEVNNPVLLLKRDINA  344
                  +PIHQISKIFY+D+ K+LN+    E N+PVLLLKRDINA
Sbjct  273  ------IPIHQISKIFYSDSGKLLNL---EERNSPVLLLKRDINA  308



Lambda      K        H        a         alpha
   0.313    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784574700


Query= TCONS_00011004

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428501 pfam05508, Ran-binding, RanGTP-binding protein. The sm...  399     1e-137


>CDD:428501 pfam05508, Ran-binding, RanGTP-binding protein.  The small Ras-like 
GTPase Ran plays an essential role in the transport of 
macromolecules in and out of the nucleus and has been implicated 
in spindle and nuclear envelope formation during mitosis 
in higher eukaryotes. The S. cerevisiae ORF YGL164c encoding 
a novel RanGTP-binding protein, termed Yrb30p was identified. 
The protein competes with yeast RanBP1 (Yrb1p) for binding 
to the GTP-bound form of yeast Ran (Gsp1p) and is, like 
Yrb1p, able to form trimeric complexes with RanGTP and some 
of the karyopherins.
Length=308

 Score = 399 bits (1028),  Expect = 1e-137, Method: Composition-based stats.
 Identities = 157/278 (56%), Positives = 191/278 (69%), Gaps = 38/278 (14%)

Query  1    MIELIAARGNTSLESAVSLTKTLRLDMQALGQRLANAAASEELLRKAAKSPRDRSRNDAE  60
            +IELIAARGNTSLESAV LTK LR ++ + G+RL  AA++EEL R+       R     E
Sbjct  68   LIELIAARGNTSLESAVPLTKDLRDEIDSFGERLEKAASAEELSRR-------RENQKEE  120

Query  61   IKLIVRDIKRLLTRIEDAVPLMNLAITTSGARLSTNLPATVSPSRLLQASTFLTAGDTQY  120
            IK ++R IK LL RIEDA+PL+NLAITTSGA LST+LP TVSPSRLLQAS FLT  DTQ+
Sbjct  121  IKKVIRYIKDLLARIEDAIPLINLAITTSGANLSTSLPPTVSPSRLLQASNFLTKADTQF  180

Query  121  WMSPTQAIQIGPTFTLSIYMLFAGHVR-PQDEEGIRETTWKEVIHKARVKLRRVPLDLTS  179
               P++ +Q+GPTFTL++YMLF GH R   DE+  R+ TWKEV+HKARVKL RVP D   
Sbjct  181  AADPSRPVQVGPTFTLTLYMLFYGHSRRKYDEDDSRKITWKEVMHKARVKLCRVPSDWVF  240

Query  180  NTLAPTWRAKLPAEARIDEYHYQMLIIEDLDDGRVHSYDEDEPKPEPYEGIPLAGMREIL  239
                           +  EY Y + IIEDLDDGR H  D++E KP PY+          +
Sbjct  241  ---------------KASEYAYHLEIIEDLDDGRYH--DDEEEKPGPYD----------I  273

Query  240  PIHQISKIFYADTSKVLNINTEGEVNNPVLLLKRDINA  277
            PIHQISKIFY+D+ K+LN+    E N+PVLLLKRDINA
Sbjct  274  PIHQISKIFYSDSGKLLNL---EERNSPVLLLKRDINA  308



Lambda      K        H        a         alpha
   0.313    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684448024


Query= TCONS_00017464

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  198     1e-63


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 198 bits (505),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 81/160 (51%), Positives = 99/160 (62%), Gaps = 7/160 (4%)

Query  78   DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  137
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  138  RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  193
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  194  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGC  233
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F C
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVC  158



Lambda      K        H        a         alpha
   0.322    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00011005

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  288     2e-98


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 288 bits (739),  Expect = 2e-98, Method: Composition-based stats.
 Identities = 123/242 (51%), Positives = 148/242 (61%), Gaps = 10/242 (4%)

Query  1    MRGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQ  56
             RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A 
Sbjct  61   ARGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAA  117

Query  57   QYNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCENNKYGMGTSAERASAMTG  116
            +Y  +  + +  YGDGAANQG   E  N A LW LPV+F CENN+YG+ T AERASA T 
Sbjct  118  KYRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTT  177

Query  117  YYK--RGLYIPGLRVNGMDVLAVMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGV  174
            Y    RG  IPGL V+GMD LAV  A K   E  R G GP + E VTYRY GHSMSD   
Sbjct  178  YADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPS  237

Query  175  GYRTRGELKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEP  233
             YRTR E +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP
Sbjct  238  TYRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEP  297

Query  234  EP  235
             P
Sbjct  298  HP  299



Lambda      K        H        a         alpha
   0.318    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00011006

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  193     1e-61


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 193 bits (492),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 79/155 (51%), Positives = 95/155 (61%), Gaps = 7/155 (5%)

Query  82   RLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFMRGGSIM  141
            R+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    RG S+ 
Sbjct  8    RMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLARGLSLE  67

Query  142  SIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQYNDRDN  197
             I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +Y  +  
Sbjct  68   EIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAKYRGKKE  124

Query  198  ITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCE  232
            + +  YGDGAANQG   E  N A LW LPV+F CE
Sbjct  125  VAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCE  159



Lambda      K        H        a         alpha
   0.322    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00017467

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  371     6e-129


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 371 bits (954),  Expect = 6e-129, Method: Composition-based stats.
 Identities = 153/301 (51%), Positives = 185/301 (61%), Gaps = 10/301 (3%)

Query  78   DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  137
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  138  RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  193
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  194  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCENNKYGMGTSAERASAMTGY  253
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F CENN+YG+ T AERASA T Y
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTY  178

Query  254  YK--RGLYIPGLRVNGMDVLAVMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVG  311
                RG  IPGL V+GMD LAV  A K   E  R G GP + E VTYRY GHSMSD    
Sbjct  179  ADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPST  238

Query  312  YRTRGELKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPE  370
            YRTR E +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP 
Sbjct  239  YRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPH  298

Query  371  P  371
            P
Sbjct  299  P  299



Lambda      K        H        a         alpha
   0.319    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00017466

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  363     4e-126


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 363 bits (935),  Expect = 4e-126, Method: Composition-based stats.
 Identities = 150/295 (51%), Positives = 180/295 (61%), Gaps = 10/295 (3%)

Query  82   RLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFMRGGSIM  141
            R+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    RG S+ 
Sbjct  8    RMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLARGLSLE  67

Query  142  SIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQYNDRDN  197
             I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +Y  +  
Sbjct  68   EIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAKYRGKKE  124

Query  198  ITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCENNKYGMGTSAERASAMTGYYK--RG  255
            + +  YGDGAANQG   E  N A LW LPV+F CENN+YG+ T AERASA T Y    RG
Sbjct  125  VAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTYADRARG  184

Query  256  LYIPGLRVNGMDVLAVMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVGYRTRGE  315
              IPGL V+GMD LAV  A K   E  R G GP + E VTYRY GHSMSD    YRTR E
Sbjct  185  YGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPSTYRTRDE  244

Query  316  LKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPEP  369
             +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP P
Sbjct  245  YEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPHP  299



Lambda      K        H        a         alpha
   0.319    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00017465

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  193     1e-61


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 193 bits (492),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 79/155 (51%), Positives = 95/155 (61%), Gaps = 7/155 (5%)

Query  82   RLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFMRGGSIM  141
            R+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    RG S+ 
Sbjct  8    RMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLARGLSLE  67

Query  142  SIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQYNDRDN  197
             I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +Y  +  
Sbjct  68   EIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAKYRGKKE  124

Query  198  ITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCE  232
            + +  YGDGAANQG   E  N A LW LPV+F CE
Sbjct  125  VAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCE  159



Lambda      K        H        a         alpha
   0.322    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00011008

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  371     6e-129


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 371 bits (954),  Expect = 6e-129, Method: Composition-based stats.
 Identities = 153/301 (51%), Positives = 185/301 (61%), Gaps = 10/301 (3%)

Query  78   DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  137
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  138  RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  193
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  194  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCENNKYGMGTSAERASAMTGY  253
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F CENN+YG+ T AERASA T Y
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTY  178

Query  254  YK--RGLYIPGLRVNGMDVLAVMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVG  311
                RG  IPGL V+GMD LAV  A K   E  R G GP + E VTYRY GHSMSD    
Sbjct  179  ADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPST  238

Query  312  YRTRGELKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPE  370
            YRTR E +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP 
Sbjct  239  YRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPH  298

Query  371  P  371
            P
Sbjct  299  P  299



Lambda      K        H        a         alpha
   0.319    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00011007

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  371     6e-129


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 371 bits (954),  Expect = 6e-129, Method: Composition-based stats.
 Identities = 153/301 (51%), Positives = 185/301 (61%), Gaps = 10/301 (3%)

Query  78   DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  137
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  138  RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  193
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  194  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCENNKYGMGTSAERASAMTGY  253
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F CENN+YG+ T AERASA T Y
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTY  178

Query  254  YK--RGLYIPGLRVNGMDVLAVMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVG  311
                RG  IPGL V+GMD LAV  A K   E  R G GP + E VTYRY GHSMSD    
Sbjct  179  ADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPST  238

Query  312  YRTRGELKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPE  370
            YRTR E +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP 
Sbjct  239  YRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPH  298

Query  371  P  371
            P
Sbjct  299  P  299



Lambda      K        H        a         alpha
   0.319    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00011012

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  363     4e-127


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 363 bits (935),  Expect = 4e-127, Method: Composition-based stats.
 Identities = 153/301 (51%), Positives = 185/301 (61%), Gaps = 10/301 (3%)

Query  4    DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  63
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  64   RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  119
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  120  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCENNKYGMGTSAERASAMTGY  179
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F CENN+YG+ T AERASA T Y
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTY  178

Query  180  YK--RGLYIPGLRVNGMDVLAVMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVG  237
                RG  IPGL V+GMD LAV  A K   E  R G GP + E VTYRY GHSMSD    
Sbjct  179  ADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPST  238

Query  238  YRTRGELKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPE  296
            YRTR E +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP 
Sbjct  239  YRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPH  298

Query  297  P  297
            P
Sbjct  299  P  299



Lambda      K        H        a         alpha
   0.319    0.138    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00011010

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  282     1e-94


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 282 bits (723),  Expect = 1e-94, Method: Composition-based stats.
 Identities = 124/295 (42%), Positives = 152/295 (52%), Gaps = 48/295 (16%)

Query  82   RLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFMRGGSIM  141
            R+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    RG S+ 
Sbjct  8    RMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLARGLSLE  67

Query  142  SIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQYNDRDN  197
             I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +Y  +  
Sbjct  68   EIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAKYRGKKE  124

Query  198  ITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCE-------------------------  232
            + +  YGDGAANQG   E  N A LW LPV+F CE                         
Sbjct  125  VAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTYADRARG  184

Query  233  ---------------IMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVGYRTRGE  277
                           +  A K   E  R G GP + E VTYRY GHSMSD    YRTR E
Sbjct  185  YGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPSTYRTRDE  244

Query  278  LKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPEP  331
             +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP P
Sbjct  245  YEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPHP  299



Lambda      K        H        a         alpha
   0.320    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00011009

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  363     4e-126


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 363 bits (935),  Expect = 4e-126, Method: Composition-based stats.
 Identities = 150/295 (51%), Positives = 180/295 (61%), Gaps = 10/295 (3%)

Query  82   RLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFMRGGSIM  141
            R+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    RG S+ 
Sbjct  8    RMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLARGLSLE  67

Query  142  SIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQYNDRDN  197
             I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +Y  +  
Sbjct  68   EIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAKYRGKKE  124

Query  198  ITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCENNKYGMGTSAERASAMTGYYK--RG  255
            + +  YGDGAANQG   E  N A LW LPV+F CENN+YG+ T AERASA T Y    RG
Sbjct  125  VAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTYADRARG  184

Query  256  LYIPGLRVNGMDVLAVMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVGYRTRGE  315
              IPGL V+GMD LAV  A K   E  R G GP + E VTYRY GHSMSD    YRTR E
Sbjct  185  YGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPSTYRTRDE  244

Query  316  LKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPEP  369
             +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP P
Sbjct  245  YEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPHP  299



Lambda      K        H        a         alpha
   0.319    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00017468

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  282     7e-96


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 282 bits (724),  Expect = 7e-96, Method: Composition-based stats.
 Identities = 127/301 (42%), Positives = 157/301 (52%), Gaps = 48/301 (16%)

Query  4    DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  63
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  64   RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  119
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  120  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCE-------------------  160
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F CE                   
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTY  178

Query  161  ---------------------IMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVG  199
                                 +  A K   E  R G GP + E VTYRY GHSMSD    
Sbjct  179  ADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPST  238

Query  200  YRTRGELKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPE  258
            YRTR E +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP 
Sbjct  239  YRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPH  298

Query  259  P  259
            P
Sbjct  299  P  299



Lambda      K        H        a         alpha
   0.320    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00017470

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  172     4e-54


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 172 bits (437),  Expect = 4e-54, Method: Composition-based stats.
 Identities = 70/139 (50%), Positives = 84/139 (60%), Gaps = 3/139 (2%)

Query  13   NKYGMGTSAERASAMTGYYK--RGLYIPGLRVNGMDVLAVMAAVKHGREFIRAGNGPLVY  70
            N+YG+ T AERASA T Y    RG  IPGL V+GMD LAV  A K   E  R G GP + 
Sbjct  161  NQYGISTPAERASASTTYADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLI  220

Query  71   EYVTYRYAGHSMSDPGVGYRTRGELKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNV  129
            E VTYRY GHSMSD    YRTR E +  R   DP+  F+  L+  G+ +E+E K I+K V
Sbjct  221  ELVTYRYGGHSMSDDPSTYRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEV  280

Query  130  RKKVNHEVAEAEKMPEPEP  148
            RK+V     +AE  PEP P
Sbjct  281  RKEVEEAFKKAESAPEPHP  299



Lambda      K        H        a         alpha
   0.317    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00017469

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  289     2e-97


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 289 bits (742),  Expect = 2e-97, Method: Composition-based stats.
 Identities = 127/301 (42%), Positives = 157/301 (52%), Gaps = 48/301 (16%)

Query  78   DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  137
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  138  RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  193
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  194  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCE-------------------  234
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F CE                   
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTY  178

Query  235  ---------------------IMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVG  273
                                 +  A K   E  R G GP + E VTYRY GHSMSD    
Sbjct  179  ADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPST  238

Query  274  YRTRGELKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPE  332
            YRTR E +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP 
Sbjct  239  YRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPH  298

Query  333  P  333
            P
Sbjct  299  P  299



Lambda      K        H        a         alpha
   0.319    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00011014

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  289     2e-97


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 289 bits (742),  Expect = 2e-97, Method: Composition-based stats.
 Identities = 127/301 (42%), Positives = 157/301 (52%), Gaps = 48/301 (16%)

Query  78   DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  137
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  138  RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  193
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  194  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCE-------------------  234
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F CE                   
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTY  178

Query  235  ---------------------IMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVG  273
                                 +  A K   E  R G GP + E VTYRY GHSMSD    
Sbjct  179  ADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPST  238

Query  274  YRTRGELKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPE  332
            YRTR E +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP 
Sbjct  239  YRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPH  298

Query  333  P  333
            P
Sbjct  299  P  299



Lambda      K        H        a         alpha
   0.319    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00017473

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  282     7e-96


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 282 bits (724),  Expect = 7e-96, Method: Composition-based stats.
 Identities = 127/301 (42%), Positives = 157/301 (52%), Gaps = 48/301 (16%)

Query  4    DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  63
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  64   RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  119
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  120  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCE-------------------  160
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F CE                   
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTY  178

Query  161  ---------------------IMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVG  199
                                 +  A K   E  R G GP + E VTYRY GHSMSD    
Sbjct  179  ADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPST  238

Query  200  YRTRGELKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPE  258
            YRTR E +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP 
Sbjct  239  YRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPH  298

Query  259  P  259
            P
Sbjct  299  P  299



Lambda      K        H        a         alpha
   0.320    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00017472

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  364     2e-126


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 364 bits (936),  Expect = 2e-126, Method: Composition-based stats.
 Identities = 150/295 (51%), Positives = 180/295 (61%), Gaps = 10/295 (3%)

Query  64   RLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFMRGGSIM  123
            R+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    RG S+ 
Sbjct  8    RMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLARGLSLE  67

Query  124  SIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQYNDRDN  179
             I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +Y  +  
Sbjct  68   EIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAKYRGKKE  124

Query  180  ITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCENNKYGMGTSAERASAMTGYYK--RG  237
            + +  YGDGAANQG   E  N A LW LPV+F CENN+YG+ T AERASA T Y    RG
Sbjct  125  VAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTYADRARG  184

Query  238  LYIPGLRVNGMDVLAVMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVGYRTRGE  297
              IPGL V+GMD LAV  A K   E  R G GP + E VTYRY GHSMSD    YRTR E
Sbjct  185  YGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPSTYRTRDE  244

Query  298  LKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPEP  351
             +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP P
Sbjct  245  YEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPHP  299



Lambda      K        H        a         alpha
   0.320    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00017471

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  282     7e-96


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 282 bits (724),  Expect = 7e-96, Method: Composition-based stats.
 Identities = 127/301 (42%), Positives = 157/301 (52%), Gaps = 48/301 (16%)

Query  4    DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  63
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  64   RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  119
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  120  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCE-------------------  160
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F CE                   
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTY  178

Query  161  ---------------------IMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVG  199
                                 +  A K   E  R G GP + E VTYRY GHSMSD    
Sbjct  179  ADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPST  238

Query  200  YRTRGELKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPE  258
            YRTR E +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP 
Sbjct  239  YRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPH  298

Query  259  P  259
            P
Sbjct  299  P  299



Lambda      K        H        a         alpha
   0.320    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0797    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00017474

Length=96
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  114     3e-33


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 114 bits (288),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 50/99 (51%), Positives = 61/99 (62%), Gaps = 7/99 (7%)

Query  1    MRGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQ  56
             RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A 
Sbjct  61   ARGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAA  117

Query  57   QYNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLF  95
            +Y  +  + +  YGDGAANQG   E  N A LW LPV+F
Sbjct  118  KYRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIF  156



Lambda      K        H        a         alpha
   0.322    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00011011

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  196     7e-63


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 196 bits (500),  Expect = 7e-63, Method: Composition-based stats.
 Identities = 80/158 (51%), Positives = 98/158 (62%), Gaps = 7/158 (4%)

Query  78   DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  137
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  138  RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  193
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  194  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLF  231
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIF  156



Lambda      K        H        a         alpha
   0.321    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00017475

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  363     4e-127


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 363 bits (935),  Expect = 4e-127, Method: Composition-based stats.
 Identities = 153/301 (51%), Positives = 185/301 (61%), Gaps = 10/301 (3%)

Query  4    DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  63
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  64   RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  119
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  120  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCENNKYGMGTSAERASAMTGY  179
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F CENN+YG+ T AERASA T Y
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTY  178

Query  180  YK--RGLYIPGLRVNGMDVLAVMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVG  237
                RG  IPGL V+GMD LAV  A K   E  R G GP + E VTYRY GHSMSD    
Sbjct  179  ADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPST  238

Query  238  YRTRGELKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPE  296
            YRTR E +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP 
Sbjct  239  YRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPH  298

Query  297  P  297
            P
Sbjct  299  P  299



Lambda      K        H        a         alpha
   0.319    0.138    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00017476

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  371     6e-129


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 371 bits (954),  Expect = 6e-129, Method: Composition-based stats.
 Identities = 153/301 (51%), Positives = 185/301 (61%), Gaps = 10/301 (3%)

Query  78   DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  137
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  138  RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  193
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  194  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCENNKYGMGTSAERASAMTGY  253
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F CENN+YG+ T AERASA T Y
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTY  178

Query  254  YK--RGLYIPGLRVNGMDVLAVMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVG  311
                RG  IPGL V+GMD LAV  A K   E  R G GP + E VTYRY GHSMSD    
Sbjct  179  ADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPST  238

Query  312  YRTRGELKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPE  370
            YRTR E +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP 
Sbjct  239  YRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPH  298

Query  371  P  371
            P
Sbjct  299  P  299



Lambda      K        H        a         alpha
   0.319    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00017477

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  189     2e-60


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 189 bits (482),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 77/152 (51%), Positives = 93/152 (61%), Gaps = 7/152 (5%)

Query  64   RLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFMRGGSIM  123
            R+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    RG S+ 
Sbjct  8    RMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLARGLSLE  67

Query  124  SIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQYNDRDN  179
             I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +Y  +  
Sbjct  68   EIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAKYRGKKE  124

Query  180  ITVDAYGDGAANQGQVHEAFNMAKLWNLPVLF  211
            + +  YGDGAANQG   E  N A LW LPV+F
Sbjct  125  VAITLYGDGAANQGDFFEGLNFAALWKLPVIF  156



Lambda      K        H        a         alpha
   0.322    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00011013

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  363     4e-126


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 363 bits (935),  Expect = 4e-126, Method: Composition-based stats.
 Identities = 150/295 (51%), Positives = 180/295 (61%), Gaps = 10/295 (3%)

Query  82   RLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFMRGGSIM  141
            R+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    RG S+ 
Sbjct  8    RMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLARGLSLE  67

Query  142  SIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQYNDRDN  197
             I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +Y  +  
Sbjct  68   EIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAKYRGKKE  124

Query  198  ITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCENNKYGMGTSAERASAMTGYYK--RG  255
            + +  YGDGAANQG   E  N A LW LPV+F CENN+YG+ T AERASA T Y    RG
Sbjct  125  VAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTYADRARG  184

Query  256  LYIPGLRVNGMDVLAVMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVGYRTRGE  315
              IPGL V+GMD LAV  A K   E  R G GP + E VTYRY GHSMSD    YRTR E
Sbjct  185  YGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPSTYRTRDE  244

Query  316  LKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPEP  369
             +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP P
Sbjct  245  YEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPHP  299



Lambda      K        H        a         alpha
   0.319    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00017478

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  194     2e-63


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 194 bits (496),  Expect = 2e-63, Method: Composition-based stats.
 Identities = 82/161 (51%), Positives = 100/161 (62%), Gaps = 7/161 (4%)

Query  4    DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  63
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  64   RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  119
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  120  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCE  160
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F CE
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCE  159



Lambda      K        H        a         alpha
   0.324    0.141    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00011015

Length=158
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  189     2e-61


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 189 bits (483),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 80/158 (51%), Positives = 98/158 (62%), Gaps = 7/158 (4%)

Query  4    DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  63
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  64   RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  119
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  120  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLF  157
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIF  156



Lambda      K        H        a         alpha
   0.323    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00011016

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  119     4e-35


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 119 bits (301),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 52/102 (51%), Positives = 63/102 (62%), Gaps = 7/102 (7%)

Query  1    MRGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQ  56
             RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A 
Sbjct  61   ARGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAA  117

Query  57   QYNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCE  98
            +Y  +  + +  YGDGAANQG   E  N A LW LPV+F CE
Sbjct  118  KYRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCE  159



Lambda      K        H        a         alpha
   0.323    0.142    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00011018

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  282     7e-96


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 282 bits (724),  Expect = 7e-96, Method: Composition-based stats.
 Identities = 127/301 (42%), Positives = 157/301 (52%), Gaps = 48/301 (16%)

Query  4    DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  63
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  64   RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  119
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  120  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCE-------------------  160
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F CE                   
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTY  178

Query  161  ---------------------IMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVG  199
                                 +  A K   E  R G GP + E VTYRY GHSMSD    
Sbjct  179  ADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPST  238

Query  200  YRTRGELKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPE  258
            YRTR E +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP 
Sbjct  239  YRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPH  298

Query  259  P  259
            P
Sbjct  299  P  299



Lambda      K        H        a         alpha
   0.320    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00011017

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  194     2e-63


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 194 bits (496),  Expect = 2e-63, Method: Composition-based stats.
 Identities = 82/161 (51%), Positives = 100/161 (62%), Gaps = 7/161 (4%)

Query  4    DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  63
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  64   RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  119
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  120  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCE  160
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F CE
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCE  159



Lambda      K        H        a         alpha
   0.324    0.141    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00011019

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  194     2e-63


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 194 bits (496),  Expect = 2e-63, Method: Composition-based stats.
 Identities = 82/161 (51%), Positives = 100/161 (62%), Gaps = 7/161 (4%)

Query  4    DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  63
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  64   RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  119
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  120  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCE  160
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F CE
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCE  159



Lambda      K        H        a         alpha
   0.324    0.141    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00017479

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  282     1e-94


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 282 bits (723),  Expect = 1e-94, Method: Composition-based stats.
 Identities = 124/295 (42%), Positives = 152/295 (52%), Gaps = 48/295 (16%)

Query  82   RLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFMRGGSIM  141
            R+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    RG S+ 
Sbjct  8    RMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLARGLSLE  67

Query  142  SIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQYNDRDN  197
             I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +Y  +  
Sbjct  68   EIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAKYRGKKE  124

Query  198  ITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCE-------------------------  232
            + +  YGDGAANQG   E  N A LW LPV+F CE                         
Sbjct  125  VAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTYADRARG  184

Query  233  ---------------IMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVGYRTRGE  277
                           +  A K   E  R G GP + E VTYRY GHSMSD    YRTR E
Sbjct  185  YGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPSTYRTRDE  244

Query  278  LKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPEP  331
             +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP P
Sbjct  245  YEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPHP  299



Lambda      K        H        a         alpha
   0.320    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00017480

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  371     6e-129


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 371 bits (954),  Expect = 6e-129, Method: Composition-based stats.
 Identities = 153/301 (51%), Positives = 185/301 (61%), Gaps = 10/301 (3%)

Query  78   DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  137
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  138  RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  193
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  194  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCENNKYGMGTSAERASAMTGY  253
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F CENN+YG+ T AERASA T Y
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCENNQYGISTPAERASASTTY  178

Query  254  YK--RGLYIPGLRVNGMDVLAVMAAVKHGREFIRAGNGPLVYEYVTYRYAGHSMSDPGVG  311
                RG  IPGL V+GMD LAV  A K   E  R G GP + E VTYRY GHSMSD    
Sbjct  179  ADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPST  238

Query  312  YRTRGELKAERAS-DPVSNFRAQLIDWGIITEDEAKTIDKNVRKKVNHEVAEAEKMPEPE  370
            YRTR E +  R   DP+  F+  L+  G+ +E+E K I+K VRK+V     +AE  PEP 
Sbjct  239  YRTRDEYEEVRKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPH  298

Query  371  P  371
            P
Sbjct  299  P  299



Lambda      K        H        a         alpha
   0.319    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00011021

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  193     1e-61


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 193 bits (492),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 79/155 (51%), Positives = 95/155 (61%), Gaps = 7/155 (5%)

Query  82   RLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFMRGGSIM  141
            R+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    RG S+ 
Sbjct  8    RMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLARGLSLE  67

Query  142  SIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQYNDRDN  197
             I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +Y  +  
Sbjct  68   EIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAKYRGKKE  124

Query  198  ITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCE  232
            + +  YGDGAANQG   E  N A LW LPV+F CE
Sbjct  125  VAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCE  159



Lambda      K        H        a         alpha
   0.322    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00011020

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  193     1e-61


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 193 bits (492),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 79/155 (51%), Positives = 95/155 (61%), Gaps = 7/155 (5%)

Query  82   RLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFMRGGSIM  141
            R+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    RG S+ 
Sbjct  8    RMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLARGLSLE  67

Query  142  SIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQYNDRDN  197
             I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +Y  +  
Sbjct  68   EIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAKYRGKKE  124

Query  198  ITVDAYGDGAANQGQVHEAFNMAKLWNLPVLFGCE  232
            + +  YGDGAANQG   E  N A LW LPV+F CE
Sbjct  125  VAITLYGDGAANQGDFFEGLNFAALWKLPVIFVCE  159



Lambda      K        H        a         alpha
   0.322    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00017481

Length=158
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  189     2e-61


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 189 bits (483),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 80/158 (51%), Positives = 98/158 (62%), Gaps = 7/158 (4%)

Query  4    DMLTIRRLEIAADALYKQKKIRGFCHLSTGQEAVAVGIEYGISKEDKLITAYRSHGFTFM  63
             M+T+RR+E A DALYK++ IRGF HL  GQEA  VGI   +   D +I  YR HG    
Sbjct  2    RMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLA  61

Query  64   RGGSIMSIVGELLGRQDGISHGKGGSMHMFCA----GFFGGNGIVGAHVPVGAGIAFAQQ  119
            RG S+  I  EL GR    + GKGGSMH +       F+GGNGI+GA VP+GAGIA A +
Sbjct  62   RGLSLEEIFAELYGRV---AKGKGGSMHGYYGAKGNRFYGGNGILGAQVPLGAGIALAAK  118

Query  120  YNDRDNITVDAYGDGAANQGQVHEAFNMAKLWNLPVLF  157
            Y  +  + +  YGDGAANQG   E  N A LW LPV+F
Sbjct  119  YRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIF  156



Lambda      K        H        a         alpha
   0.323    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00011024

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00017482

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00017483

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00017484

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  103     2e-27
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  71.8    2e-16
CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain. ...  65.1    2e-13
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  58.9    1e-11
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  56.1    9e-11


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 103 bits (259),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 48/185 (26%), Positives = 70/185 (38%), Gaps = 24/185 (13%)

Query  80   MQHHMIKLVNDGRLFFAPIH-SPKRILDIGTGSGIWPIEMASIFPEAEITGTDLSPVQPN  138
              H   +L+ D  L   P   SP R+LD G G+GI+   + +      +TG D SP+   
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAIE  58

Query  139  EVPSNVHFLVDDATEEDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYMECH  198
                NV F   D  E++    A  FD I    ++   P    +LR+    LKPGG +   
Sbjct  59   RALLNVRFDQFD--EQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLLLS  116

Query  199  EFDPKLKCDDGTMPLENPDGFCEYALLDWVDLNVRSSQVTDPPRQFRIAHRIARWMREVG  258
                  + D                LL+W  L  R+  +         A  + R + E G
Sbjct  117  TPLASDEADR--------------LLLEWPYLRPRNGHI-----SLFSARSLKRLLEEAG  157

Query  259  FVDVQ  263
            F  V 
Sbjct  158  FEVVS  162


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 71.8 bits (177),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 12/99 (12%)

Query  104  ILDIGTGSGIWPIEMASIFPEAEITGTDLSPVQPN-------EVPSNVHFLVDDATEEDW  156
            +LD+G G+G   + +A     A +TG DLSP           E   NV F+  DA  ED 
Sbjct  1    VLDLGCGTGRLTLALARRG-GARVTGVDLSPEMLERARERAAEAGLNVEFVQGDA--EDL  57

Query  157  LWDADHFDFIHTAHMIGSF--PSFKDVLRKAFKHLKPGG  193
             +    FD + ++ ++     P  +  LR+  + LKPGG
Sbjct  58   PFPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96


>CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain.  This family 
appears to have methyltransferase activity.
Length=150

 Score = 65.1 bits (159),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 38/136 (28%), Positives = 56/136 (41%), Gaps = 16/136 (12%)

Query  98   IHSPKRILDIGTGSGIWPIEMAS-IFPEAEITGTDLSPV---------QPNEVPSNVHFL  147
            I    R+LD+G G+G    E+A  + P AE+ G D+S           Q      NV F 
Sbjct  1    IDKGMRVLDLGCGTGHLSFELAEELGPNAEVVGIDISEEAIEKARENAQKLGF-DNVEFE  59

Query  148  VDDATEEDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYMECHEFD-----P  202
              D  E   L + D FD + +  ++   P    VL++  + LKPGG +   + D     P
Sbjct  60   QGDIEELPELLEDDKFDVVISNCVLNHIPDPDKVLQEILRVLKPGGRLIISDPDSLAELP  119

Query  203  KLKCDDGTMPLENPDG  218
                +D T       G
Sbjct  120  AHVKEDSTYYAGCVGG  135


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 58.9 bits (143),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 26/101 (26%), Positives = 37/101 (37%), Gaps = 15/101 (15%)

Query  105  LDIGTGSGIWPIEMASIFPEAEITGTDLSPVQ-----------PNEVPSNVHFLVDDATE  153
            L+IG G+G     +    P  E TG D+SP                    V     D  E
Sbjct  1    LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAALGLLNAVRVELFQLDLGE  60

Query  154  EDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGY  194
             D       FD +  ++++      + VLR   + LKPGG 
Sbjct  61   LDPG----SFDVVVASNVLHHLADPRAVLRNIRRLLKPGGV  97


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 56.1 bits (136),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 15/99 (15%)

Query  105  LDIGTGSGIWPIEMASIFPEAEITGTDLSP-----VQPNEVPSNVHFLVDDATE---EDW  156
            LD+G G+G+    +A +     +TG D+SP      +       + F+V DA +    D 
Sbjct  1    LDVGCGTGLLTELLARLGAR--VTGVDISPEMLELAREKAPREGLTFVVGDAEDLPFPD-  57

Query  157  LWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYM  195
                + FD + ++ ++      +  LR+  + LKPGG +
Sbjct  58   ----NSFDLVLSSEVLHHVEDPERALREIARVLKPGGIL  92



Lambda      K        H        a         alpha
   0.319    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00011026

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  95.6    1e-24
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  58.3    1e-11


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 95.6 bits (238),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 66/183 (36%), Gaps = 32/183 (17%)

Query  51   MQHHMIKLVNDGRLFFAPIH-SPKRILDIGTGSGIWPIEM----------DLSPVQPNEV  99
              H   +L+ D  L   P   SP R+LD G G+GI+   +          D SP+     
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGRVLDFGCGTGIFLRLLRAQGFSVTGVDPSPIAIERA  60

Query  100  PSNVHFLVDDATEEDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYMECHEF  159
              NV F   D  E++    A  FD I    ++   P    +LR+    LKPGG +     
Sbjct  61   LLNVRFDQFD--EQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLLLSTP  118

Query  160  DPKLKCDDGTMPLENPDGFCEYALLDWVDLNVRSSQVTDPPRQFRIAHRIARWMREVGFV  219
                + D                LL+W  L  R+  +         A  + R + E GF 
Sbjct  119  LASDEADR--------------LLLEWPYLRPRNGHI-----SLFSARSLKRLLEEAGFE  159

Query  220  DVQ  222
             V 
Sbjct  160  VVS  162


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 58.3 bits (142),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 27/98 (28%), Positives = 42/98 (43%), Gaps = 22/98 (22%)

Query  75   ILDIGTGSGIWPIEM-----------DLSPVQPN-------EVPSNVHFLVDDATEEDWL  116
            +LD+G G+G   + +           DLSP           E   NV F+  DA  ED  
Sbjct  1    VLDLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAEAGLNVEFVQGDA--EDLP  58

Query  117  WDADHFDFIHTAHMIGSF--PSFKDVLRKAFKHLKPGG  152
            +    FD + ++ ++     P  +  LR+  + LKPGG
Sbjct  59   FPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96



Lambda      K        H        a         alpha
   0.319    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00011025

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  103     2e-27
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  71.8    2e-16
CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain. ...  65.1    2e-13
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  58.9    9e-12
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  56.1    8e-11


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 103 bits (259),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 48/185 (26%), Positives = 70/185 (38%), Gaps = 24/185 (13%)

Query  61   MQHHMIKLVNDGRLFFAPIH-SPKRILDIGTGSGIWPIEMASIFPEAEITGTDLSPVQPN  119
              H   +L+ D  L   P   SP R+LD G G+GI+   + +      +TG D SP+   
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAIE  58

Query  120  EVPSNVHFLVDDATEEDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYMECH  179
                NV F   D  E++    A  FD I    ++   P    +LR+    LKPGG +   
Sbjct  59   RALLNVRFDQFD--EQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLLLS  116

Query  180  EFDPKLKCDDGTMPLENPDGFCEYALLDWVDLNVRSSQVTDPPRQFRIAHRIARWMREVG  239
                  + D                LL+W  L  R+  +         A  + R + E G
Sbjct  117  TPLASDEADR--------------LLLEWPYLRPRNGHI-----SLFSARSLKRLLEEAG  157

Query  240  FVDVQ  244
            F  V 
Sbjct  158  FEVVS  162


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 71.8 bits (177),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 12/99 (12%)

Query  85   ILDIGTGSGIWPIEMASIFPEAEITGTDLSPVQPN-------EVPSNVHFLVDDATEEDW  137
            +LD+G G+G   + +A     A +TG DLSP           E   NV F+  DA  ED 
Sbjct  1    VLDLGCGTGRLTLALARRG-GARVTGVDLSPEMLERARERAAEAGLNVEFVQGDA--EDL  57

Query  138  LWDADHFDFIHTAHMIGSF--PSFKDVLRKAFKHLKPGG  174
             +    FD + ++ ++     P  +  LR+  + LKPGG
Sbjct  58   PFPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96


>CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain.  This family 
appears to have methyltransferase activity.
Length=150

 Score = 65.1 bits (159),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 38/136 (28%), Positives = 56/136 (41%), Gaps = 16/136 (12%)

Query  79   IHSPKRILDIGTGSGIWPIEMAS-IFPEAEITGTDLSPV---------QPNEVPSNVHFL  128
            I    R+LD+G G+G    E+A  + P AE+ G D+S           Q      NV F 
Sbjct  1    IDKGMRVLDLGCGTGHLSFELAEELGPNAEVVGIDISEEAIEKARENAQKLGF-DNVEFE  59

Query  129  VDDATEEDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYMECHEFD-----P  183
              D  E   L + D FD + +  ++   P    VL++  + LKPGG +   + D     P
Sbjct  60   QGDIEELPELLEDDKFDVVISNCVLNHIPDPDKVLQEILRVLKPGGRLIISDPDSLAELP  119

Query  184  KLKCDDGTMPLENPDG  199
                +D T       G
Sbjct  120  AHVKEDSTYYAGCVGG  135


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 58.9 bits (143),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 26/101 (26%), Positives = 37/101 (37%), Gaps = 15/101 (15%)

Query  86   LDIGTGSGIWPIEMASIFPEAEITGTDLSPVQ-----------PNEVPSNVHFLVDDATE  134
            L+IG G+G     +    P  E TG D+SP                    V     D  E
Sbjct  1    LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAALGLLNAVRVELFQLDLGE  60

Query  135  EDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGY  175
             D       FD +  ++++      + VLR   + LKPGG 
Sbjct  61   LDPG----SFDVVVASNVLHHLADPRAVLRNIRRLLKPGGV  97


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 56.1 bits (136),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 15/99 (15%)

Query  86   LDIGTGSGIWPIEMASIFPEAEITGTDLSP-----VQPNEVPSNVHFLVDDATE---EDW  137
            LD+G G+G+    +A +     +TG D+SP      +       + F+V DA +    D 
Sbjct  1    LDVGCGTGLLTELLARLGAR--VTGVDISPEMLELAREKAPREGLTFVVGDAEDLPFPD-  57

Query  138  LWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYM  176
                + FD + ++ ++      +  LR+  + LKPGG +
Sbjct  58   ----NSFDLVLSSEVLHHVEDPERALREIARVLKPGGIL  92



Lambda      K        H        a         alpha
   0.319    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00017485

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459721 pfam00227, Proteasome, Proteasome subunit. The proteas...  95.7    5e-26
CDD:463597 pfam12465, Pr_beta_C, Proteasome beta subunits C termi...  64.0    2e-15


>CDD:459721 pfam00227, Proteasome, Proteasome subunit.  The proteasome is 
a multisubunit structure that degrades proteins. Protein degradation 
is an essential component of regulation because proteins 
can become misfolded, damaged, or unnecessary. Proteasomes 
and their homologs vary greatly in complexity: from HslV 
(heat shock locus v), which is encoded by 1 gene in bacteria, 
to the eukaryotic 20S proteasome, which is encoded by more 
than 14 genes. Recently evidence of two novel groups of 
bacterial proteasomes was proposed. The first is Anbu, which 
is sparsely distributed among cyanobacteria and proteobacteria. 
The second is call beta-proteobacteria proteasome homolog 
(BPH).
Length=188

 Score = 95.7 bits (239),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 1/100 (1%)

Query  1    MTMLKQHLFRYQGHIGAYLVVAGVDPTGVG-LFTVHAHGSTDKLPYVTMGSGSLAAMSVF  59
              +     +  +   G  L++AG D  G   L+ +   GS  +     +GSGS  A  V 
Sbjct  89   DLLQAYTQYSGRRPFGVSLLIAGYDEDGGPHLYQIDPSGSYIEYKATAIGSGSQYAYGVL  148

Query  60   ESMWKPQLNREEAIALCSEAIKAGIFNDLGSGSNVDVCVI  99
            E +++P L  EEA+ L  +A+K  I  D  SG N++V VI
Sbjct  149  EKLYRPDLTLEEAVELAVKALKEAIDRDALSGGNIEVAVI  188


>CDD:463597 pfam12465, Pr_beta_C, Proteasome beta subunits C terminal.  This 
domain family is found in eukaryotes, and is approximately 
40 amino acids in length. The family is found in association 
with pfam00227. There is a conserved GTT sequence motif. 
There is a single completely conserved residue Y that may be 
functionally important. This family includes the C terminal 
of the beta-type subunits of the proteasome, a multimeric 
complex that degrades proteins into peptides as part of the 
MHC class I-mediated Ag-presenting pathway.
Length=36

 Score = 64.0 bits (157),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 0/36 (0%)

Query  114  PNERGEKERNYRFPRGTTAYLNEKIITKQDLRKYVT  149
            PNERGE++ +Y+F RGTTA L+E +  K ++ + V 
Sbjct  1    PNERGERQGSYKFKRGTTAVLSETVPLKLEVVEEVV  36



Lambda      K        H        a         alpha
   0.318    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00011028

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  103     3e-27
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  71.8    2e-16
CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain. ...  65.1    2e-13
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  58.9    9e-12
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  56.1    9e-11


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 103 bits (259),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 48/185 (26%), Positives = 70/185 (38%), Gaps = 24/185 (13%)

Query  79   MQHHMIKLVNDGRLFFAPIH-SPKRILDIGTGSGIWPIEMASIFPEAEITGTDLSPVQPN  137
              H   +L+ D  L   P   SP R+LD G G+GI+   + +      +TG D SP+   
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAIE  58

Query  138  EVPSNVHFLVDDATEEDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYMECH  197
                NV F   D  E++    A  FD I    ++   P    +LR+    LKPGG +   
Sbjct  59   RALLNVRFDQFD--EQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLLLS  116

Query  198  EFDPKLKCDDGTMPLENPDGFCEYALLDWVDLNVRSSQVTDPPRQFRIAHRIARWMREVG  257
                  + D                LL+W  L  R+  +         A  + R + E G
Sbjct  117  TPLASDEADR--------------LLLEWPYLRPRNGHI-----SLFSARSLKRLLEEAG  157

Query  258  FVDVQ  262
            F  V 
Sbjct  158  FEVVS  162


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 71.8 bits (177),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 12/99 (12%)

Query  103  ILDIGTGSGIWPIEMASIFPEAEITGTDLSPVQPN-------EVPSNVHFLVDDATEEDW  155
            +LD+G G+G   + +A     A +TG DLSP           E   NV F+  DA  ED 
Sbjct  1    VLDLGCGTGRLTLALARRG-GARVTGVDLSPEMLERARERAAEAGLNVEFVQGDA--EDL  57

Query  156  LWDADHFDFIHTAHMIGSF--PSFKDVLRKAFKHLKPGG  192
             +    FD + ++ ++     P  +  LR+  + LKPGG
Sbjct  58   PFPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96


>CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain.  This family 
appears to have methyltransferase activity.
Length=150

 Score = 65.1 bits (159),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 38/136 (28%), Positives = 56/136 (41%), Gaps = 16/136 (12%)

Query  97   IHSPKRILDIGTGSGIWPIEMAS-IFPEAEITGTDLSPV---------QPNEVPSNVHFL  146
            I    R+LD+G G+G    E+A  + P AE+ G D+S           Q      NV F 
Sbjct  1    IDKGMRVLDLGCGTGHLSFELAEELGPNAEVVGIDISEEAIEKARENAQKLGF-DNVEFE  59

Query  147  VDDATEEDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYMECHEFD-----P  201
              D  E   L + D FD + +  ++   P    VL++  + LKPGG +   + D     P
Sbjct  60   QGDIEELPELLEDDKFDVVISNCVLNHIPDPDKVLQEILRVLKPGGRLIISDPDSLAELP  119

Query  202  KLKCDDGTMPLENPDG  217
                +D T       G
Sbjct  120  AHVKEDSTYYAGCVGG  135


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 58.9 bits (143),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 26/101 (26%), Positives = 37/101 (37%), Gaps = 15/101 (15%)

Query  104  LDIGTGSGIWPIEMASIFPEAEITGTDLSPVQ-----------PNEVPSNVHFLVDDATE  152
            L+IG G+G     +    P  E TG D+SP                    V     D  E
Sbjct  1    LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAALGLLNAVRVELFQLDLGE  60

Query  153  EDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGY  193
             D       FD +  ++++      + VLR   + LKPGG 
Sbjct  61   LDPG----SFDVVVASNVLHHLADPRAVLRNIRRLLKPGGV  97


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 56.1 bits (136),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 15/99 (15%)

Query  104  LDIGTGSGIWPIEMASIFPEAEITGTDLSP-----VQPNEVPSNVHFLVDDATE---EDW  155
            LD+G G+G+    +A +     +TG D+SP      +       + F+V DA +    D 
Sbjct  1    LDVGCGTGLLTELLARLGAR--VTGVDISPEMLELAREKAPREGLTFVVGDAEDLPFPD-  57

Query  156  LWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYM  194
                + FD + ++ ++      +  LR+  + LKPGG +
Sbjct  58   ----NSFDLVLSSEVLHHVEDPERALREIARVLKPGGIL  92



Lambda      K        H        a         alpha
   0.319    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00011029

Length=271
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  102     2e-27
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  71.8    8e-17
CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain. ...  65.1    9e-14
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  58.9    6e-12
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  56.1    6e-11


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 102 bits (255),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 48/185 (26%), Positives = 70/185 (38%), Gaps = 24/185 (13%)

Query  1    MQHHMIKLVNDGRLFFAPIH-SPKRILDIGTGSGIWPIEMASIFPEAEITGTDLSPVQPN  59
              H   +L+ D  L   P   SP R+LD G G+GI+   + +      +TG D SP+   
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAIE  58

Query  60   EVPSNVHFLVDDATEEDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYMECH  119
                NV F   D  E++    A  FD I    ++   P    +LR+    LKPGG +   
Sbjct  59   RALLNVRFDQFD--EQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLLLS  116

Query  120  EFDPKLKCDDGTMPLENPDGFCEYALLDWVDLNVRSSQVTDPPRQFRIAHRIARWMREVG  179
                  + D                LL+W  L  R+  +         A  + R + E G
Sbjct  117  TPLASDEADR--------------LLLEWPYLRPRNGHI-----SLFSARSLKRLLEEAG  157

Query  180  FVDVQ  184
            F  V 
Sbjct  158  FEVVS  162


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 71.8 bits (177),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 12/99 (12%)

Query  25   ILDIGTGSGIWPIEMASIFPEAEITGTDLSPVQPN-------EVPSNVHFLVDDATEEDW  77
            +LD+G G+G   + +A     A +TG DLSP           E   NV F+  DA  ED 
Sbjct  1    VLDLGCGTGRLTLALARRG-GARVTGVDLSPEMLERARERAAEAGLNVEFVQGDA--EDL  57

Query  78   LWDADHFDFIHTAHMIGSF--PSFKDVLRKAFKHLKPGG  114
             +    FD + ++ ++     P  +  LR+  + LKPGG
Sbjct  58   PFPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96


>CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain.  This family 
appears to have methyltransferase activity.
Length=150

 Score = 65.1 bits (159),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 38/136 (28%), Positives = 56/136 (41%), Gaps = 16/136 (12%)

Query  19   IHSPKRILDIGTGSGIWPIEMAS-IFPEAEITGTDLSPV---------QPNEVPSNVHFL  68
            I    R+LD+G G+G    E+A  + P AE+ G D+S           Q      NV F 
Sbjct  1    IDKGMRVLDLGCGTGHLSFELAEELGPNAEVVGIDISEEAIEKARENAQKLGF-DNVEFE  59

Query  69   VDDATEEDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYMECHEFD-----P  123
              D  E   L + D FD + +  ++   P    VL++  + LKPGG +   + D     P
Sbjct  60   QGDIEELPELLEDDKFDVVISNCVLNHIPDPDKVLQEILRVLKPGGRLIISDPDSLAELP  119

Query  124  KLKCDDGTMPLENPDG  139
                +D T       G
Sbjct  120  AHVKEDSTYYAGCVGG  135


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 58.9 bits (143),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 26/101 (26%), Positives = 37/101 (37%), Gaps = 15/101 (15%)

Query  26   LDIGTGSGIWPIEMASIFPEAEITGTDLSPVQ-----------PNEVPSNVHFLVDDATE  74
            L+IG G+G     +    P  E TG D+SP                    V     D  E
Sbjct  1    LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAALGLLNAVRVELFQLDLGE  60

Query  75   EDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGY  115
             D       FD +  ++++      + VLR   + LKPGG 
Sbjct  61   LDPG----SFDVVVASNVLHHLADPRAVLRNIRRLLKPGGV  97


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 56.1 bits (136),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 15/99 (15%)

Query  26   LDIGTGSGIWPIEMASIFPEAEITGTDLSP-----VQPNEVPSNVHFLVDDATE---EDW  77
            LD+G G+G+    +A +     +TG D+SP      +       + F+V DA +    D 
Sbjct  1    LDVGCGTGLLTELLARLGAR--VTGVDISPEMLELAREKAPREGLTFVVGDAEDLPFPD-  57

Query  78   LWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYM  116
                + FD + ++ ++      +  LR+  + LKPGG +
Sbjct  58   ----NSFDLVLSSEVLHHVEDPERALREIARVLKPGGIL  92



Lambda      K        H        a         alpha
   0.321    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00017487

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  103     2e-27
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  71.8    2e-16
CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain. ...  65.1    2e-13
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  58.9    9e-12
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  56.1    8e-11


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 103 bits (258),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 48/185 (26%), Positives = 70/185 (38%), Gaps = 24/185 (13%)

Query  60   MQHHMIKLVNDGRLFFAPIH-SPKRILDIGTGSGIWPIEMASIFPEAEITGTDLSPVQPN  118
              H   +L+ D  L   P   SP R+LD G G+GI+   + +      +TG D SP+   
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAIE  58

Query  119  EVPSNVHFLVDDATEEDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYMECH  178
                NV F   D  E++    A  FD I    ++   P    +LR+    LKPGG +   
Sbjct  59   RALLNVRFDQFD--EQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLLLS  116

Query  179  EFDPKLKCDDGTMPLENPDGFCEYALLDWVDLNVRSSQVTDPPRQFRIAHRIARWMREVG  238
                  + D                LL+W  L  R+  +         A  + R + E G
Sbjct  117  TPLASDEADR--------------LLLEWPYLRPRNGHI-----SLFSARSLKRLLEEAG  157

Query  239  FVDVQ  243
            F  V 
Sbjct  158  FEVVS  162


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 71.8 bits (177),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 12/99 (12%)

Query  84   ILDIGTGSGIWPIEMASIFPEAEITGTDLSPVQPN-------EVPSNVHFLVDDATEEDW  136
            +LD+G G+G   + +A     A +TG DLSP           E   NV F+  DA  ED 
Sbjct  1    VLDLGCGTGRLTLALARRG-GARVTGVDLSPEMLERARERAAEAGLNVEFVQGDA--EDL  57

Query  137  LWDADHFDFIHTAHMIGSF--PSFKDVLRKAFKHLKPGG  173
             +    FD + ++ ++     P  +  LR+  + LKPGG
Sbjct  58   PFPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96


>CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain.  This family 
appears to have methyltransferase activity.
Length=150

 Score = 65.1 bits (159),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 38/136 (28%), Positives = 56/136 (41%), Gaps = 16/136 (12%)

Query  78   IHSPKRILDIGTGSGIWPIEMAS-IFPEAEITGTDLSPV---------QPNEVPSNVHFL  127
            I    R+LD+G G+G    E+A  + P AE+ G D+S           Q      NV F 
Sbjct  1    IDKGMRVLDLGCGTGHLSFELAEELGPNAEVVGIDISEEAIEKARENAQKLGF-DNVEFE  59

Query  128  VDDATEEDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYMECHEFD-----P  182
              D  E   L + D FD + +  ++   P    VL++  + LKPGG +   + D     P
Sbjct  60   QGDIEELPELLEDDKFDVVISNCVLNHIPDPDKVLQEILRVLKPGGRLIISDPDSLAELP  119

Query  183  KLKCDDGTMPLENPDG  198
                +D T       G
Sbjct  120  AHVKEDSTYYAGCVGG  135


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 58.9 bits (143),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 26/101 (26%), Positives = 37/101 (37%), Gaps = 15/101 (15%)

Query  85   LDIGTGSGIWPIEMASIFPEAEITGTDLSPVQ-----------PNEVPSNVHFLVDDATE  133
            L+IG G+G     +    P  E TG D+SP                    V     D  E
Sbjct  1    LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAALGLLNAVRVELFQLDLGE  60

Query  134  EDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGY  174
             D       FD +  ++++      + VLR   + LKPGG 
Sbjct  61   LDPG----SFDVVVASNVLHHLADPRAVLRNIRRLLKPGGV  97


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 56.1 bits (136),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 15/99 (15%)

Query  85   LDIGTGSGIWPIEMASIFPEAEITGTDLSP-----VQPNEVPSNVHFLVDDATE---EDW  136
            LD+G G+G+    +A +     +TG D+SP      +       + F+V DA +    D 
Sbjct  1    LDVGCGTGLLTELLARLGAR--VTGVDISPEMLELAREKAPREGLTFVVGDAEDLPFPD-  57

Query  137  LWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYM  175
                + FD + ++ ++      +  LR+  + LKPGG +
Sbjct  58   ----NSFDLVLSSEVLHHVEDPERALREIARVLKPGGIL  92



Lambda      K        H        a         alpha
   0.319    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00017486

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  94.8    1e-24
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  58.3    7e-12


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 94.8 bits (236),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 66/183 (36%), Gaps = 32/183 (17%)

Query  1    MQHHMIKLVNDGRLFFAPIH-SPKRILDIGTGSGIWPIEM----------DLSPVQPNEV  49
              H   +L+ D  L   P   SP R+LD G G+GI+   +          D SP+     
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGRVLDFGCGTGIFLRLLRAQGFSVTGVDPSPIAIERA  60

Query  50   PSNVHFLVDDATEEDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYMECHEF  109
              NV F   D  E++    A  FD I    ++   P    +LR+    LKPGG +     
Sbjct  61   LLNVRFDQFD--EQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLLLSTP  118

Query  110  DPKLKCDDGTMPLENPDGFCEYALLDWVDLNVRSSQVTDPPRQFRIAHRIARWMREVGFV  169
                + D                LL+W  L  R+  +         A  + R + E GF 
Sbjct  119  LASDEADR--------------LLLEWPYLRPRNGHI-----SLFSARSLKRLLEEAGFE  159

Query  170  DVQ  172
             V 
Sbjct  160  VVS  162


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 58.3 bits (142),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 27/98 (28%), Positives = 42/98 (43%), Gaps = 22/98 (22%)

Query  25   ILDIGTGSGIWPIEM-----------DLSPVQPN-------EVPSNVHFLVDDATEEDWL  66
            +LD+G G+G   + +           DLSP           E   NV F+  DA  ED  
Sbjct  1    VLDLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAEAGLNVEFVQGDA--EDLP  58

Query  67   WDADHFDFIHTAHMIGSF--PSFKDVLRKAFKHLKPGG  102
            +    FD + ++ ++     P  +  LR+  + LKPGG
Sbjct  59   FPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96



Lambda      K        H        a         alpha
   0.321    0.139    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00011031

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  96.0    1e-24
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  58.3    1e-11


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 96.0 bits (239),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 66/183 (36%), Gaps = 32/183 (17%)

Query  61   MQHHMIKLVNDGRLFFAPIH-SPKRILDIGTGSGIWPIEM----------DLSPVQPNEV  109
              H   +L+ D  L   P   SP R+LD G G+GI+   +          D SP+     
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGRVLDFGCGTGIFLRLLRAQGFSVTGVDPSPIAIERA  60

Query  110  PSNVHFLVDDATEEDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYMECHEF  169
              NV F   D  E++    A  FD I    ++   P    +LR+    LKPGG +     
Sbjct  61   LLNVRFDQFD--EQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLLLSTP  118

Query  170  DPKLKCDDGTMPLENPDGFCEYALLDWVDLNVRSSQVTDPPRQFRIAHRIARWMREVGFV  229
                + D                LL+W  L  R+  +         A  + R + E GF 
Sbjct  119  LASDEADR--------------LLLEWPYLRPRNGHI-----SLFSARSLKRLLEEAGFE  159

Query  230  DVQ  232
             V 
Sbjct  160  VVS  162


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 58.3 bits (142),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 27/98 (28%), Positives = 42/98 (43%), Gaps = 22/98 (22%)

Query  85   ILDIGTGSGIWPIEM-----------DLSPVQPN-------EVPSNVHFLVDDATEEDWL  126
            +LD+G G+G   + +           DLSP           E   NV F+  DA  ED  
Sbjct  1    VLDLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAEAGLNVEFVQGDA--EDLP  58

Query  127  WDADHFDFIHTAHMIGSF--PSFKDVLRKAFKHLKPGG  162
            +    FD + ++ ++     P  +  LR+  + LKPGG
Sbjct  59   FPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96



Lambda      K        H        a         alpha
   0.319    0.137    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00011030

Length=134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  59.7    8e-13


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 59.7 bits (145),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 5/86 (6%)

Query  50   MQHHMIKLVNDGRLFFAPIH-SPKRILDIGTGSGIWPIEMASIFPEAEITGTDLSPVQPN  108
              H   +L+ D  L   P   SP R+LD G G+GI+   + +      +TG D SP+   
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGRVLDFGCGTGIFLRLLRAQGF--SVTGVDPSPIAIE  58

Query  109  EVPSNVHFLVDDATEEDWLWDADHFD  134
                NV F   D  E++    A  FD
Sbjct  59   RALLNVRFDQFD--EQEAAVPAGKFD  82



Lambda      K        H        a         alpha
   0.317    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00017488

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  67.8    1e-14


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 67.8 bits (166),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 49/139 (35%), Gaps = 21/139 (15%)

Query  35   AEITGTDLSPVQPNEVPSNVHFLVDDATEEDWLWDADHFDFIHTAHMIGSFPSFKDVLRK  94
              +TG D SP+       NV F   D  E++    A  FD I    ++   P    +LR+
Sbjct  45   FSVTGVDPSPIAIERALLNVRFDQFD--EQEAAVPAGKFDVIVAREVLEHVPDPPALLRQ  102

Query  95   AFKHLKPGGYMECHEFDPKLKCDDGTMPLENPDGFCEYALLDWVDLNVRSSQVTDPPRQF  154
                LKPGG +         + D                LL+W  L  R+  +       
Sbjct  103  IAALLKPGGLLLLSTPLASDEADR--------------LLLEWPYLRPRNGHI-----SL  143

Query  155  RIAHRIARWMREVGFVDVQ  173
              A  + R + E GF  V 
Sbjct  144  FSARSLKRLLEEAGFEVVS  162



Lambda      K        H        a         alpha
   0.321    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00011032

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  96.0    1e-24
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  58.3    1e-11


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 96.0 bits (239),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 66/183 (36%), Gaps = 32/183 (17%)

Query  80   MQHHMIKLVNDGRLFFAPIH-SPKRILDIGTGSGIWPIEM----------DLSPVQPNEV  128
              H   +L+ D  L   P   SP R+LD G G+GI+   +          D SP+     
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGRVLDFGCGTGIFLRLLRAQGFSVTGVDPSPIAIERA  60

Query  129  PSNVHFLVDDATEEDWLWDADHFDFIHTAHMIGSFPSFKDVLRKAFKHLKPGGYMECHEF  188
              NV F   D  E++    A  FD I    ++   P    +LR+    LKPGG +     
Sbjct  61   LLNVRFDQFD--EQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLLLSTP  118

Query  189  DPKLKCDDGTMPLENPDGFCEYALLDWVDLNVRSSQVTDPPRQFRIAHRIARWMREVGFV  248
                + D                LL+W  L  R+  +         A  + R + E GF 
Sbjct  119  LASDEADR--------------LLLEWPYLRPRNGHI-----SLFSARSLKRLLEEAGFE  159

Query  249  DVQ  251
             V 
Sbjct  160  VVS  162


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 58.3 bits (142),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 27/98 (28%), Positives = 42/98 (43%), Gaps = 22/98 (22%)

Query  104  ILDIGTGSGIWPIEM-----------DLSPVQPN-------EVPSNVHFLVDDATEEDWL  145
            +LD+G G+G   + +           DLSP           E   NV F+  DA  ED  
Sbjct  1    VLDLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAEAGLNVEFVQGDA--EDLP  58

Query  146  WDADHFDFIHTAHMIGSF--PSFKDVLRKAFKHLKPGG  181
            +    FD + ++ ++     P  +  LR+  + LKPGG
Sbjct  59   FPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96



Lambda      K        H        a         alpha
   0.320    0.136    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00017489

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  67.8    1e-14


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 67.8 bits (166),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 49/139 (35%), Gaps = 21/139 (15%)

Query  35   AEITGTDLSPVQPNEVPSNVHFLVDDATEEDWLWDADHFDFIHTAHMIGSFPSFKDVLRK  94
              +TG D SP+       NV F   D  E++    A  FD I    ++   P    +LR+
Sbjct  45   FSVTGVDPSPIAIERALLNVRFDQFD--EQEAAVPAGKFDVIVAREVLEHVPDPPALLRQ  102

Query  95   AFKHLKPGGYMECHEFDPKLKCDDGTMPLENPDGFCEYALLDWVDLNVRSSQVTDPPRQF  154
                LKPGG +         + D                LL+W  L  R+  +       
Sbjct  103  IAALLKPGGLLLLSTPLASDEADR--------------LLLEWPYLRPRNGHI-----SL  143

Query  155  RIAHRIARWMREVGFVDVQ  173
              A  + R + E GF  V 
Sbjct  144  FSARSLKRLLEEAGFEVVS  162



Lambda      K        H        a         alpha
   0.321    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00017490

Length=1466


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1854967054


Query= TCONS_00011034

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.150    0.511    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00011037

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00017491

Length=1194


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1531673086


Query= TCONS_00011039

Length=1024
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  120     9e-32
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  93.8    2e-23
CDD:465031 pfam16124, RecQ_Zn_bind, RecQ zinc-binding. This domai...  87.7    1e-21
CDD:462780 pfam09382, RQC, RQC domain. This DNA-binding domain is...  84.5    5e-20


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 120 bits (302),  Expect = 9e-32, Method: Composition-based stats.
 Identities = 50/181 (28%), Positives = 86/181 (48%), Gaps = 29/181 (16%)

Query  391  QLEAIDATLSGKDTFVLMPTGGGKSLCYQLPSI--VTSGSTRGVTIVVSPLLSLMQDQVS  448
            Q EAI A L G+D  V  PTG GK+L + LP++  +         +V++P   L +    
Sbjct  4    QAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYE  63

Query  449  HLKRLKIK-----AFLLNGETKQEERQWIMQTLSGPAAEEQIELLYITPEMVNKSQALIR  503
             LK+L        A LL G++++E+ + +          +  ++L  TP        L+ 
Sbjct  64   ELKKLGKGLGLKVASLLGGDSRKEQLEKL----------KGPDILVGTPGR------LLD  107

Query  504  SLEKLNRRRRLARIVIDEAHCVSQWGHDFRPDYKALGEVRDQLP-GVPMMALTATATENV  562
             L++    + L  +V+DEAH +   G  F PD +   E+  +LP    ++ L+AT   N+
Sbjct  108  LLQERKLLKNLKLLVLDEAHRLLDMG--FGPDLE---EILRRLPKKRQILLLSATLPRNL  162

Query  563  K  563
            +
Sbjct  163  E  163


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 93.8 bits (234),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 38/112 (34%), Positives = 61/112 (54%), Gaps = 3/112 (3%)

Query  599  EVLENIADIIKTSYPNKSGIIYCLSRKTCETVAEALTSQHNIRAEYYHAGMDSSKRAEVQ  658
            E LE + +++K     K  +I+  ++KT E  AE L  +  I+    H  +   +R E+ 
Sbjct  1    EKLEALLELLKKERGGKV-LIFSQTKKTLE--AELLLEKEGIKVARLHGDLSQEEREEIL  57

Query  659  EWWQSGRVHVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDG  710
            E ++ G++ V+VAT     G+D PDV  VI++ +P +   Y Q  GRAGR G
Sbjct  58   EDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109


>CDD:465031 pfam16124, RecQ_Zn_bind, RecQ zinc-binding.  This domain is the 
zinc-binding domain of ATP-dependent DNA helicase RecQ.
Length=66

 Score = 87.7 bits (218),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query  721  YRDATSIMSMIDKGEGGKQQKNRQRQMLRNVMQYCLNLADCRRVQILAYFNEYFRPIDCN  780
            Y+D   +  +I++ E  +++K  + Q L+ ++ YC N  DCRR Q+L YF E F    C 
Sbjct  1    YQDVVRLRFLIEQSEADEERKEVELQKLQAMVAYCENTTDCRRKQLLRYFGEEFDSEPC-  59

Query  781  KSCDNCR  787
             +CDNC 
Sbjct  60   GNCDNCL  66


>CDD:462780 pfam09382, RQC, RQC domain.  This DNA-binding domain is found 
in the RecQ helicase among others and has a helix-turn-helix 
structure. The RQC domain, found only in RecQ family enzymes, 
is a high affinity G4 DNA binding domain.
Length=108

 Score = 84.5 bits (210),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 49/115 (43%), Gaps = 10/115 (9%)

Query  792  FEHRDFSQQAASVLKIVRYFQDLEDKVTMSYCVNIFRGS-VKRFRSPEHKDAPGFGAGSG  850
             E  D +++A  +L  V        +    + +++ RGS  K+ R   H     FG G  
Sbjct  2    PETVDVTEEAQKILSCVYR---TGQRFGAGHLIDVLRGSKNKKIRQLGHDKLSTFGIGKD  58

Query  851  LDLQVAERLFQYLLVEGALFEENVVNGSRFAVQYIKLGRRAADFESGRCKLKMPV  905
            L  +   R+ + L+ EG L E ++   S      +KL  +A +   G  K+ + V
Sbjct  59   LSKKEWRRIIRQLIAEGYL-EVDIEFYS-----VLKLTPKAREVLKGEEKVMLRV  107



Lambda      K        H        a         alpha
   0.316    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0637    0.140     1.90     42.6     43.6 

Effective search space used: 1313932928


Query= TCONS_00017493

Length=1024
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  120     9e-32
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  93.8    2e-23
CDD:465031 pfam16124, RecQ_Zn_bind, RecQ zinc-binding. This domai...  87.7    1e-21
CDD:462780 pfam09382, RQC, RQC domain. This DNA-binding domain is...  84.5    5e-20


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 120 bits (302),  Expect = 9e-32, Method: Composition-based stats.
 Identities = 50/181 (28%), Positives = 86/181 (48%), Gaps = 29/181 (16%)

Query  391  QLEAIDATLSGKDTFVLMPTGGGKSLCYQLPSI--VTSGSTRGVTIVVSPLLSLMQDQVS  448
            Q EAI A L G+D  V  PTG GK+L + LP++  +         +V++P   L +    
Sbjct  4    QAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYE  63

Query  449  HLKRLKIK-----AFLLNGETKQEERQWIMQTLSGPAAEEQIELLYITPEMVNKSQALIR  503
             LK+L        A LL G++++E+ + +          +  ++L  TP        L+ 
Sbjct  64   ELKKLGKGLGLKVASLLGGDSRKEQLEKL----------KGPDILVGTPGR------LLD  107

Query  504  SLEKLNRRRRLARIVIDEAHCVSQWGHDFRPDYKALGEVRDQLP-GVPMMALTATATENV  562
             L++    + L  +V+DEAH +   G  F PD +   E+  +LP    ++ L+AT   N+
Sbjct  108  LLQERKLLKNLKLLVLDEAHRLLDMG--FGPDLE---EILRRLPKKRQILLLSATLPRNL  162

Query  563  K  563
            +
Sbjct  163  E  163


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 93.8 bits (234),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 38/112 (34%), Positives = 61/112 (54%), Gaps = 3/112 (3%)

Query  599  EVLENIADIIKTSYPNKSGIIYCLSRKTCETVAEALTSQHNIRAEYYHAGMDSSKRAEVQ  658
            E LE + +++K     K  +I+  ++KT E  AE L  +  I+    H  +   +R E+ 
Sbjct  1    EKLEALLELLKKERGGKV-LIFSQTKKTLE--AELLLEKEGIKVARLHGDLSQEEREEIL  57

Query  659  EWWQSGRVHVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDG  710
            E ++ G++ V+VAT     G+D PDV  VI++ +P +   Y Q  GRAGR G
Sbjct  58   EDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109


>CDD:465031 pfam16124, RecQ_Zn_bind, RecQ zinc-binding.  This domain is the 
zinc-binding domain of ATP-dependent DNA helicase RecQ.
Length=66

 Score = 87.7 bits (218),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query  721  YRDATSIMSMIDKGEGGKQQKNRQRQMLRNVMQYCLNLADCRRVQILAYFNEYFRPIDCN  780
            Y+D   +  +I++ E  +++K  + Q L+ ++ YC N  DCRR Q+L YF E F    C 
Sbjct  1    YQDVVRLRFLIEQSEADEERKEVELQKLQAMVAYCENTTDCRRKQLLRYFGEEFDSEPC-  59

Query  781  KSCDNCR  787
             +CDNC 
Sbjct  60   GNCDNCL  66


>CDD:462780 pfam09382, RQC, RQC domain.  This DNA-binding domain is found 
in the RecQ helicase among others and has a helix-turn-helix 
structure. The RQC domain, found only in RecQ family enzymes, 
is a high affinity G4 DNA binding domain.
Length=108

 Score = 84.5 bits (210),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 49/115 (43%), Gaps = 10/115 (9%)

Query  792  FEHRDFSQQAASVLKIVRYFQDLEDKVTMSYCVNIFRGS-VKRFRSPEHKDAPGFGAGSG  850
             E  D +++A  +L  V        +    + +++ RGS  K+ R   H     FG G  
Sbjct  2    PETVDVTEEAQKILSCVYR---TGQRFGAGHLIDVLRGSKNKKIRQLGHDKLSTFGIGKD  58

Query  851  LDLQVAERLFQYLLVEGALFEENVVNGSRFAVQYIKLGRRAADFESGRCKLKMPV  905
            L  +   R+ + L+ EG L E ++   S      +KL  +A +   G  K+ + V
Sbjct  59   LSKKEWRRIIRQLIAEGYL-EVDIEFYS-----VLKLTPKAREVLKGEEKVMLRV  107



Lambda      K        H        a         alpha
   0.316    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1313932928


Query= TCONS_00011040

Length=1373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  120     1e-31
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  94.6    2e-23
CDD:465031 pfam16124, RecQ_Zn_bind, RecQ zinc-binding. This domai...  90.0    2e-22
CDD:462780 pfam09382, RQC, RQC domain. This DNA-binding domain is...  85.3    3e-20


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 120 bits (302),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 50/181 (28%), Positives = 86/181 (48%), Gaps = 29/181 (16%)

Query  740  QLEAIDATLSGKDTFVLMPTGGGKSLCYQLPSI--VTSGSTRGVTIVVSPLLSLMQDQVS  797
            Q EAI A L G+D  V  PTG GK+L + LP++  +         +V++P   L +    
Sbjct  4    QAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYE  63

Query  798  HLKRLKIK-----AFLLNGETKQEERQWIMQTLSGPAAEEQIELLYITPEMVNKSQALIR  852
             LK+L        A LL G++++E+ + +          +  ++L  TP        L+ 
Sbjct  64   ELKKLGKGLGLKVASLLGGDSRKEQLEKL----------KGPDILVGTPGR------LLD  107

Query  853  SLEKLNRRRRLARIVIDEAHCVSQWGHDFRPDYKALGEVRDQLP-GVPMMALTATATENV  911
             L++    + L  +V+DEAH +   G  F PD +   E+  +LP    ++ L+AT   N+
Sbjct  108  LLQERKLLKNLKLLVLDEAHRLLDMG--FGPDLE---EILRRLPKKRQILLLSATLPRNL  162

Query  912  K  912
            +
Sbjct  163  E  163


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 94.6 bits (236),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 38/112 (34%), Positives = 61/112 (54%), Gaps = 3/112 (3%)

Query  948   EVLENIADIIKTSYPNKSGIIYCLSRKTCETVAEALTSQHNIRAEYYHAGMDSSKRAEVQ  1007
             E LE + +++K     K  +I+  ++KT E  AE L  +  I+    H  +   +R E+ 
Sbjct  1     EKLEALLELLKKERGGKV-LIFSQTKKTLE--AELLLEKEGIKVARLHGDLSQEEREEIL  57

Query  1008  EWWQSGRVHVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDG  1059
             E ++ G++ V+VAT     G+D PDV  VI++ +P +   Y Q  GRAGR G
Sbjct  58    EDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109


>CDD:465031 pfam16124, RecQ_Zn_bind, RecQ zinc-binding.  This domain is the 
zinc-binding domain of ATP-dependent DNA helicase RecQ.
Length=66

 Score = 90.0 bits (224),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query  1070  YRDATSIMSMIDKGEGGKQQKNRQRQMLRNVMQYCLNLADCRRVQILAYFNEYFRPIDCN  1129
             Y+D   +  +I++ E  +++K  + Q L+ ++ YC N  DCRR Q+L YF E F    C 
Sbjct  1     YQDVVRLRFLIEQSEADEERKEVELQKLQAMVAYCENTTDCRRKQLLRYFGEEFDSEPC-  59

Query  1130  KSCDNCR  1136
              +CDNC 
Sbjct  60    GNCDNCL  66


>CDD:462780 pfam09382, RQC, RQC domain.  This DNA-binding domain is found 
in the RecQ helicase among others and has a helix-turn-helix 
structure. The RQC domain, found only in RecQ family enzymes, 
is a high affinity G4 DNA binding domain.
Length=108

 Score = 85.3 bits (212),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 49/115 (43%), Gaps = 10/115 (9%)

Query  1141  FEHRDFSQQAASVLKIVRYFQDLEDKVTMSYCVNIFRGS-VKRFRSPEHKDAPGFGAGSG  1199
              E  D +++A  +L  V        +    + +++ RGS  K+ R   H     FG G  
Sbjct  2     PETVDVTEEAQKILSCVYR---TGQRFGAGHLIDVLRGSKNKKIRQLGHDKLSTFGIGKD  58

Query  1200  LDLQVAERLFQYLLVEGALFEENVVNGSRFAVQYIKLGRRAADFESGRCKLKMPV  1254
             L  +   R+ + L+ EG L E ++   S      +KL  +A +   G  K+ + V
Sbjct  59    LSKKEWRRIIRQLIAEGYL-EVDIEFYS-----VLKLTPKAREVLKGEEKVMLRV  107



Lambda      K        H        a         alpha
   0.314    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1755165000


Query= TCONS_00017494

Length=1024
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  120     9e-32
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  93.8    2e-23
CDD:465031 pfam16124, RecQ_Zn_bind, RecQ zinc-binding. This domai...  87.7    1e-21
CDD:462780 pfam09382, RQC, RQC domain. This DNA-binding domain is...  84.5    5e-20


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 120 bits (302),  Expect = 9e-32, Method: Composition-based stats.
 Identities = 50/181 (28%), Positives = 86/181 (48%), Gaps = 29/181 (16%)

Query  391  QLEAIDATLSGKDTFVLMPTGGGKSLCYQLPSI--VTSGSTRGVTIVVSPLLSLMQDQVS  448
            Q EAI A L G+D  V  PTG GK+L + LP++  +         +V++P   L +    
Sbjct  4    QAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYE  63

Query  449  HLKRLKIK-----AFLLNGETKQEERQWIMQTLSGPAAEEQIELLYITPEMVNKSQALIR  503
             LK+L        A LL G++++E+ + +          +  ++L  TP        L+ 
Sbjct  64   ELKKLGKGLGLKVASLLGGDSRKEQLEKL----------KGPDILVGTPGR------LLD  107

Query  504  SLEKLNRRRRLARIVIDEAHCVSQWGHDFRPDYKALGEVRDQLP-GVPMMALTATATENV  562
             L++    + L  +V+DEAH +   G  F PD +   E+  +LP    ++ L+AT   N+
Sbjct  108  LLQERKLLKNLKLLVLDEAHRLLDMG--FGPDLE---EILRRLPKKRQILLLSATLPRNL  162

Query  563  K  563
            +
Sbjct  163  E  163


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 93.8 bits (234),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 38/112 (34%), Positives = 61/112 (54%), Gaps = 3/112 (3%)

Query  599  EVLENIADIIKTSYPNKSGIIYCLSRKTCETVAEALTSQHNIRAEYYHAGMDSSKRAEVQ  658
            E LE + +++K     K  +I+  ++KT E  AE L  +  I+    H  +   +R E+ 
Sbjct  1    EKLEALLELLKKERGGKV-LIFSQTKKTLE--AELLLEKEGIKVARLHGDLSQEEREEIL  57

Query  659  EWWQSGRVHVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDG  710
            E ++ G++ V+VAT     G+D PDV  VI++ +P +   Y Q  GRAGR G
Sbjct  58   EDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109


>CDD:465031 pfam16124, RecQ_Zn_bind, RecQ zinc-binding.  This domain is the 
zinc-binding domain of ATP-dependent DNA helicase RecQ.
Length=66

 Score = 87.7 bits (218),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query  721  YRDATSIMSMIDKGEGGKQQKNRQRQMLRNVMQYCLNLADCRRVQILAYFNEYFRPIDCN  780
            Y+D   +  +I++ E  +++K  + Q L+ ++ YC N  DCRR Q+L YF E F    C 
Sbjct  1    YQDVVRLRFLIEQSEADEERKEVELQKLQAMVAYCENTTDCRRKQLLRYFGEEFDSEPC-  59

Query  781  KSCDNCR  787
             +CDNC 
Sbjct  60   GNCDNCL  66


>CDD:462780 pfam09382, RQC, RQC domain.  This DNA-binding domain is found 
in the RecQ helicase among others and has a helix-turn-helix 
structure. The RQC domain, found only in RecQ family enzymes, 
is a high affinity G4 DNA binding domain.
Length=108

 Score = 84.5 bits (210),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 49/115 (43%), Gaps = 10/115 (9%)

Query  792  FEHRDFSQQAASVLKIVRYFQDLEDKVTMSYCVNIFRGS-VKRFRSPEHKDAPGFGAGSG  850
             E  D +++A  +L  V        +    + +++ RGS  K+ R   H     FG G  
Sbjct  2    PETVDVTEEAQKILSCVYR---TGQRFGAGHLIDVLRGSKNKKIRQLGHDKLSTFGIGKD  58

Query  851  LDLQVAERLFQYLLVEGALFEENVVNGSRFAVQYIKLGRRAADFESGRCKLKMPV  905
            L  +   R+ + L+ EG L E ++   S      +KL  +A +   G  K+ + V
Sbjct  59   LSKKEWRRIIRQLIAEGYL-EVDIEFYS-----VLKLTPKAREVLKGEEKVMLRV  107



Lambda      K        H        a         alpha
   0.316    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1313932928


Query= TCONS_00017496

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  58.7    7e-11


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 58.7 bits (142),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 30/141 (21%)

Query  64   PWLVYLQGGPGMGCRPPQEYGWVGTA---LDKGYQVLFLDQRGTGMSSTITARTLALQGN  120
            P ++ L G PG          W   A      G++V+ LD RG G SS   A+       
Sbjct  1    PPVLLLHGLPGSS------DLWRKLAPALARDGFRVIALDLRGFGKSSRPKAQD------  48

Query  121  AVKQAEYLKQFRADNIVRDCEAIRRCLTTDYPEDQRKWSIIGQSFGGFCAVTYLSMFPEG  180
                      +R D++  D E I   L         K +++G S GG  A+ Y + +P+ 
Sbjct  49   ---------DYRTDDLAEDLEYILEAL------GLEKVNLVGHSMGGLIALAYAAKYPDR  93

Query  181  LTEAFICGGLPPLVDGPDTVY  201
            +    + G L P  +  +   
Sbjct  94   VKALVLLGALDPPHELDEADR  114



Lambda      K        H        a         alpha
   0.321    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00011042

Length=292


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00011043

Length=314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465953 pfam19036, Fuz_longin_1, First Longin domain of FUZ, M...  155     4e-48
CDD:465954 pfam19037, Fuz_longin_2, Second Longin domain of FUZ, ...  110     7e-31


>CDD:465953 pfam19036, Fuz_longin_1, First Longin domain of FUZ, MON1 and 
HPS1.  This entry is specific to the first Longin domain of 
the HerMon (Hermansky-Pudlak syndrome and MON1-CCZ1) family, 
including protein sequences of FUZ, MON1 and HPS1 families. 
The Mon1/Ccz1 complex (MC1) is the GDP/GTP exchange factor 
(GEF) for the Rab GTPase Ypt7/Rab7 during vesicular trafficking. 
The Hps1/Hps4 complex (BLOC-3) is a Rab32 and Rab38 GEF 
and is required for biogenesis of melanosomes and platelet 
dense granules. Inturned (INTU) and Fuzzy (FUZ) proteins interact 
as members of the ciliogenesis and planar polarity effector 
(CPLANE) complex that controls recruitment of intraflagellar 
transport machinery to the basal body of primary cilia.
Length=125

 Score = 155 bits (395),  Expect = 4e-48, Method: Composition-based stats.
 Identities = 65/125 (52%), Positives = 83/125 (66%), Gaps = 2/125 (2%)

Query  28   KHYLILSAAGKPIWTRHGDGG--LISGYIGVILTIISFYEDANDRLTSFCAGDTKFVIVT  85
            KH LILS+AGKPI+TR+GD    L+    G +   ISF +  +D LTS    +TK V + 
Sbjct  1    KHLLILSSAGKPIFTRYGDEDESLLFSLFGPLNGSISFMQTQDDTLTSITCENTKVVFLE  60

Query  86   KGPLYLVAISRLLESDTQLKLQLEALYMQILSTLTLPSLTHLFSVRPSTDLKRPLQGSET  145
            KGPL LVAISR  ES+ QL+ QL+ +Y QILS L LP LT +F+ RP+ DL+R L G E 
Sbjct  61   KGPLLLVAISRSGESEQQLRRQLDVVYNQILSLLGLPQLTRIFNRRPNEDLRRLLSGLED  120

Query  146  LLSTL  150
            LL +L
Sbjct  121  LLDSL  125


>CDD:465954 pfam19037, Fuz_longin_2, Second Longin domain of FUZ, MON1 and 
HPS1.  This entry represents a longin-like domain found in 
Fuz and related proteins. This entry is specific to the second 
Longin domain of the HerMon (Hermansky-Pudlak syndrome and 
MON1-CCZ1) family, including protein sequences of FUZ, MON1 
and HPS1 families. The Mon1/Ccz1 complex (MC1) is the GDP/GTP 
exchange factor (GEF) for the Rab GTPase Ypt7/Rab7 during 
vesicular trafficking. The Hps1/Hps4 complex (BLOC-3) is 
a Rab32 and Rab38 GEF and is required for biogenesis of melanosomes 
and platelet dense granules. Inturned (INTU) and Fuzzy 
(FUZ) proteins interact as members of the ciliogenesis and 
planar polarity effector (CPLANE) complex that controls recruitment 
of intraflagellar transport machinery to the basal 
body of primary cilia.
Length=98

 Score = 110 bits (276),  Expect = 7e-31, Method: Composition-based stats.
 Identities = 41/114 (36%), Positives = 63/114 (55%), Gaps = 17/114 (15%)

Query  190  SLLYGLVVAGGRLVSVVRPKKHSLHPGDLQLLFNMIFEAEGIKAGGGESWIPVCLPGFNS  249
            SLL+ L++ GG+LV+  RP+  SLHP DL LLF ++  +   K    E WIP+CLP FN 
Sbjct  2    SLLFALLLVGGKLVAAYRPRWASLHPSDLLLLFLLVQSSSPFK--SLELWIPICLPKFN-  58

Query  250  SGYLYMYVSFLDLRENSGTSASETTTEQSVAIILISPNKEGFFEMQEMRNSLVE  303
             G L+ Y+SFL               + ++ ++L+S +K  FFE+  + +    
Sbjct  59   PGVLHRYISFLG--------------DINLCLLLLSGDKPAFFELSLLDDRFWL  98



Lambda      K        H        a         alpha
   0.320    0.136    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00017497

Length=365


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00017498

Length=899


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1154153256


Query= TCONS_00011047

Length=1675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461183 pfam04118, Dopey_N, Dopey, N-terminal. DopA is the fou...  143     7e-38


>CDD:461183 pfam04118, Dopey_N, Dopey, N-terminal.  DopA is the founding 
member of the Dopey family and is required for correct cell 
morphology and spatiotemporal organisation of multicellular 
structures in the filamentous fungus Aspergillus nidulans. DopA 
homologs are found in mammals. S. cerevisiae DOP1 is essential 
for viability and, affects cellular morphogenesis.
Length=302

 Score = 143 bits (362),  Expect = 7e-38, Method: Composition-based stats.
 Identities = 54/84 (64%), Positives = 68/84 (81%), Gaps = 1/84 (1%)

Query  91   DSVIMPEPGLLIRCFASGLVDEQILVQRNFLDLLVTHLPLSSPILQSRITDDDLQRLMIA  150
            ++V+ PEPGLLIR  A+GL DE ILVQR FLDLL++HLPL SP+LQ  ++ +D + L+ A
Sbjct  219  EAVLGPEPGLLIRALAAGLEDENILVQRGFLDLLLSHLPLDSPVLQE-LSPEDKELLVEA  277

Query  151  AVGVVARRDMSLNRRLWAWFLGPE  174
            A+ VV RRDMSLNRRLW+W LGPE
Sbjct  278  ALKVVLRRDMSLNRRLWSWLLGPE  301



Lambda      K        H        a         alpha
   0.319    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2106285300


Query= TCONS_00017499

Length=899


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1154153256


Query= TCONS_00011048

Length=899


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1154153256


Query= TCONS_00011049

Length=899


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0808    0.140     1.90     42.6     43.6 

Effective search space used: 1154153256


Query= TCONS_00017500

Length=947
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461183 pfam04118, Dopey_N, Dopey, N-terminal. DopA is the fou...  456     4e-155


>CDD:461183 pfam04118, Dopey_N, Dopey, N-terminal.  DopA is the founding 
member of the Dopey family and is required for correct cell 
morphology and spatiotemporal organisation of multicellular 
structures in the filamentous fungus Aspergillus nidulans. DopA 
homologs are found in mammals. S. cerevisiae DOP1 is essential 
for viability and, affects cellular morphogenesis.
Length=302

 Score = 456 bits (1177),  Expect = 4e-155, Method: Composition-based stats.
 Identities = 179/329 (54%), Positives = 228/329 (69%), Gaps = 28/329 (9%)

Query  36   DKNYRRYASTVERALSLFDTALQEWADYISFLSRLLKALQSHPADLPVVPHKVLVAKRLS  95
            D  YR+YAS VE+AL+ F+ ++QEWADYISFL +LLKALQS+P     +PHK+LV+KRL+
Sbjct  1    DSKYRKYASAVEKALASFE-SVQEWADYISFLGKLLKALQSNP--FSYIPHKLLVSKRLA  57

Query  96   QCLNPSLPSGVHQKALEVYTYIFNLIKSEGLSHDLPLYLPGIAPTLTFASLTVRPLFLSL  155
            QCLNP+LPSGVHQKALEVY YIF  I S+GLS DLPL+ PG+ P  ++AS++V+P  L L
Sbjct  58   QCLNPALPSGVHQKALEVYDYIFENIGSDGLSRDLPLWSPGLFPLFSYASISVKPQLLDL  117

Query  156  IENHICGLEPWAIRPALKAIILALLPGLEEETSDDFDHTLRLVNKFRDIAATKLETQRTG  215
             E +   L   ++RPALK +IL+LLPGLEEE S+ FD TL+L++K ++            
Sbjct  118  YEKYYLPL-GESLRPALKGLILSLLPGLEEENSEFFDRTLKLLDKLKEAVGDS-------  169

Query  216  ADAESSGQYFWQCLFLASITSPSRRSGVLAYLNRYLPKLGITDRRPSKGDGSNFEDMPHD  275
                    YFWQCL+LA ITSPSRR G L YL R LPKL        +      E+    
Sbjct  170  --------YFWQCLWLAIITSPSRRLGALNYLLRRLPKLNAVKHLDIQNLLLLSEE----  217

Query  276  MRVAVDSVIMPEPGLLIRCFASGLVDEQILVQRNFLDLLVTHLPLSSPILQSRITDDDLQ  335
                 ++V+ PEPGLLIR  A+GL DE ILVQR FLDLL++HLPL SP+LQ  ++ +D +
Sbjct  218  ----AEAVLGPEPGLLIRALAAGLEDENILVQRGFLDLLLSHLPLDSPVLQE-LSPEDKE  272

Query  336  RLMIAAVGVVARRDMSLNRRLWAWFLGPE  364
             L+ AA+ VV RRDMSLNRRLW+W LGPE
Sbjct  273  LLVEAALKVVLRRDMSLNRRLWSWLLGPE  301



Lambda      K        H        a         alpha
   0.320    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1204910476


Query= TCONS_00011050

Length=1446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461183 pfam04118, Dopey_N, Dopey, N-terminal. DopA is the fou...  458     5e-151


>CDD:461183 pfam04118, Dopey_N, Dopey, N-terminal.  DopA is the founding 
member of the Dopey family and is required for correct cell 
morphology and spatiotemporal organisation of multicellular 
structures in the filamentous fungus Aspergillus nidulans. DopA 
homologs are found in mammals. S. cerevisiae DOP1 is essential 
for viability and, affects cellular morphogenesis.
Length=302

 Score = 458 bits (1181),  Expect = 5e-151, Method: Composition-based stats.
 Identities = 179/329 (54%), Positives = 228/329 (69%), Gaps = 28/329 (9%)

Query  36   DKNYRRYASTVERALSLFDTALQEWADYISFLSRLLKALQSHPADLPVVPHKVLVAKRLS  95
            D  YR+YAS VE+AL+ F+ ++QEWADYISFL +LLKALQS+P     +PHK+LV+KRL+
Sbjct  1    DSKYRKYASAVEKALASFE-SVQEWADYISFLGKLLKALQSNP--FSYIPHKLLVSKRLA  57

Query  96   QCLNPSLPSGVHQKALEVYTYIFNLIKSEGLSHDLPLYLPGIAPTLTFASLTVRPLFLSL  155
            QCLNP+LPSGVHQKALEVY YIF  I S+GLS DLPL+ PG+ P  ++AS++V+P  L L
Sbjct  58   QCLNPALPSGVHQKALEVYDYIFENIGSDGLSRDLPLWSPGLFPLFSYASISVKPQLLDL  117

Query  156  IENHICGLEPWAIRPALKAIILALLPGLEEETSDDFDHTLRLVNKFRDIAATKLETQRTG  215
             E +   L   ++RPALK +IL+LLPGLEEE S+ FD TL+L++K ++            
Sbjct  118  YEKYYLPL-GESLRPALKGLILSLLPGLEEENSEFFDRTLKLLDKLKEAVGDS-------  169

Query  216  ADAESSGQYFWQCLFLASITSPSRRSGVLAYLNRYLPKLGITDRRPSKGDGSNFEDMPHD  275
                    YFWQCL+LA ITSPSRR G L YL R LPKL        +      E+    
Sbjct  170  --------YFWQCLWLAIITSPSRRLGALNYLLRRLPKLNAVKHLDIQNLLLLSEE----  217

Query  276  MRVAVDSVIMPEPGLLIRCFASGLVDEQILVQRNFLDLLVTHLPLSSPILQSRITDDDLQ  335
                 ++V+ PEPGLLIR  A+GL DE ILVQR FLDLL++HLPL SP+LQ  ++ +D +
Sbjct  218  ----AEAVLGPEPGLLIRALAAGLEDENILVQRGFLDLLLSHLPLDSPVLQE-LSPEDKE  272

Query  336  RLMIAAVGVVARRDMSLNRRLWAWFLGPE  364
             L+ AA+ VV RRDMSLNRRLW+W LGPE
Sbjct  273  LLVEAALKVVLRRDMSLNRRLWSWLLGPE  301



Lambda      K        H        a         alpha
   0.320    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1827827814


Query= TCONS_00017501

Length=899


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1154153256


Query= TCONS_00011051

Length=492


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00011053

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427117 pfam03062, MBOAT, MBOAT, membrane-bound O-acyltransfer...  129     2e-35


>CDD:427117 pfam03062, MBOAT, MBOAT, membrane-bound O-acyltransferase family. 
 The MBOAT (membrane bound O-acyl transferase) family of 
membrane proteins contains a variety of acyltransferase enzymes. 
A conserved histidine has been suggested to be the active 
site residue.
Length=334

 Score = 129 bits (326),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 68/286 (24%), Positives = 104/286 (36%), Gaps = 35/286 (12%)

Query  24   ALSERDRVSIPPEQSAFSARNYVAYALYSPLYLTGPILTFNDYIAQQRYPPPSLTKTRTL  83
            +LS R   S        S   Y+ Y  + P  L GPI +++DY++  R P          
Sbjct  63   SLSFRKLASAAALSQDPSLLEYLGYVFFYPGLLVGPIFSYSDYMSFPRDPLFRWLYYVKR  122

Query  84   LYGI---RFFLTLLSMELM---LHYIYALAISQASPDWSLYSTGQLSMLAFFNLHMIWLK  137
                     FL L  + L+   L ++     S+     S     + S++    L ++WL 
Sbjct  123  NLAPALGALFLGLTYLILIQYLLSHLPDKDFSKF-KFLSYAFLLRFSVIMRILLGLLWLF  181

Query  138  LLIPWRFFRL----WALVDGI-------DPPENMVRCVSNNYSVFAFWRGWHRSFNRWIV  186
            LLI      L      ++ G+         PEN+ RC  N  S   FWR W+   ++W+ 
Sbjct  182  LLIFDFLGWLFAEGEDILFGLGFNGWDRVAPENIYRCWENAVSFSEFWRAWNIPVHKWLK  241

Query  187  RYLYIPLGGGARSGGANKSSPALLSKARQIFNFLVVFTFVALWHDINLRLLMWGWLITLF  246
            RY+Y PLG                 K  +    L  F F A+WH   L  L+W  L  L 
Sbjct  242  RYVYKPLGKK--------------GKLNKFLATLATFLFSAVWHGYYLGYLLWFVLRVLL  287

Query  247  FLPETIATLLFPARTWRSRPTAYRVLCGVGAVGNILMMMIANLVGF  292
             L E +   L      +   T  R       +  +   +  +L   
Sbjct  288  LLAEKLIRRLVRLSFLK---TDRRRPNLSNVIFWLGAFLGPSLALL  330



Lambda      K        H        a         alpha
   0.329    0.142    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00011052

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00011055

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427117 pfam03062, MBOAT, MBOAT, membrane-bound O-acyltransfer...  129     2e-35


>CDD:427117 pfam03062, MBOAT, MBOAT, membrane-bound O-acyltransferase family. 
 The MBOAT (membrane bound O-acyl transferase) family of 
membrane proteins contains a variety of acyltransferase enzymes. 
A conserved histidine has been suggested to be the active 
site residue.
Length=334

 Score = 129 bits (326),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 68/286 (24%), Positives = 104/286 (36%), Gaps = 35/286 (12%)

Query  24   ALSERDRVSIPPEQSAFSARNYVAYALYSPLYLTGPILTFNDYIAQQRYPPPSLTKTRTL  83
            +LS R   S        S   Y+ Y  + P  L GPI +++DY++  R P          
Sbjct  63   SLSFRKLASAAALSQDPSLLEYLGYVFFYPGLLVGPIFSYSDYMSFPRDPLFRWLYYVKR  122

Query  84   LYGI---RFFLTLLSMELM---LHYIYALAISQASPDWSLYSTGQLSMLAFFNLHMIWLK  137
                     FL L  + L+   L ++     S+     S     + S++    L ++WL 
Sbjct  123  NLAPALGALFLGLTYLILIQYLLSHLPDKDFSKF-KFLSYAFLLRFSVIMRILLGLLWLF  181

Query  138  LLIPWRFFRL----WALVDGI-------DPPENMVRCVSNNYSVFAFWRGWHRSFNRWIV  186
            LLI      L      ++ G+         PEN+ RC  N  S   FWR W+   ++W+ 
Sbjct  182  LLIFDFLGWLFAEGEDILFGLGFNGWDRVAPENIYRCWENAVSFSEFWRAWNIPVHKWLK  241

Query  187  RYLYIPLGGGARSGGANKSSPALLSKARQIFNFLVVFTFVALWHDINLRLLMWGWLITLF  246
            RY+Y PLG                 K  +    L  F F A+WH   L  L+W  L  L 
Sbjct  242  RYVYKPLGKK--------------GKLNKFLATLATFLFSAVWHGYYLGYLLWFVLRVLL  287

Query  247  FLPETIATLLFPARTWRSRPTAYRVLCGVGAVGNILMMMIANLVGF  292
             L E +   L      +   T  R       +  +   +  +L   
Sbjct  288  LLAEKLIRRLVRLSFLK---TDRRRPNLSNVIFWLGAFLGPSLALL  330



Lambda      K        H        a         alpha
   0.329    0.142    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00017502

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427117 pfam03062, MBOAT, MBOAT, membrane-bound O-acyltransfer...  129     2e-35


>CDD:427117 pfam03062, MBOAT, MBOAT, membrane-bound O-acyltransferase family. 
 The MBOAT (membrane bound O-acyl transferase) family of 
membrane proteins contains a variety of acyltransferase enzymes. 
A conserved histidine has been suggested to be the active 
site residue.
Length=334

 Score = 129 bits (326),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 68/286 (24%), Positives = 104/286 (36%), Gaps = 35/286 (12%)

Query  24   ALSERDRVSIPPEQSAFSARNYVAYALYSPLYLTGPILTFNDYIAQQRYPPPSLTKTRTL  83
            +LS R   S        S   Y+ Y  + P  L GPI +++DY++  R P          
Sbjct  63   SLSFRKLASAAALSQDPSLLEYLGYVFFYPGLLVGPIFSYSDYMSFPRDPLFRWLYYVKR  122

Query  84   LYGI---RFFLTLLSMELM---LHYIYALAISQASPDWSLYSTGQLSMLAFFNLHMIWLK  137
                     FL L  + L+   L ++     S+     S     + S++    L ++WL 
Sbjct  123  NLAPALGALFLGLTYLILIQYLLSHLPDKDFSKF-KFLSYAFLLRFSVIMRILLGLLWLF  181

Query  138  LLIPWRFFRL----WALVDGI-------DPPENMVRCVSNNYSVFAFWRGWHRSFNRWIV  186
            LLI      L      ++ G+         PEN+ RC  N  S   FWR W+   ++W+ 
Sbjct  182  LLIFDFLGWLFAEGEDILFGLGFNGWDRVAPENIYRCWENAVSFSEFWRAWNIPVHKWLK  241

Query  187  RYLYIPLGGGARSGGANKSSPALLSKARQIFNFLVVFTFVALWHDINLRLLMWGWLITLF  246
            RY+Y PLG                 K  +    L  F F A+WH   L  L+W  L  L 
Sbjct  242  RYVYKPLGKK--------------GKLNKFLATLATFLFSAVWHGYYLGYLLWFVLRVLL  287

Query  247  FLPETIATLLFPARTWRSRPTAYRVLCGVGAVGNILMMMIANLVGF  292
             L E +   L      +   T  R       +  +   +  +L   
Sbjct  288  LLAEKLIRRLVRLSFLK---TDRRRPNLSNVIFWLGAFLGPSLALL  330



Lambda      K        H        a         alpha
   0.329    0.142    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00011054

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00011057

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00011059

Length=128
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425830 pfam00708, Acylphosphatase, Acylphosphatase                93.4    9e-27


>CDD:425830 pfam00708, Acylphosphatase, Acylphosphatase.  
Length=85

 Score = 93.4 bits (233),  Expect = 9e-27, Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 45/83 (54%), Gaps = 0/83 (0%)

Query  34   FRVHGTVQGVGFRDFTQKRAVEYGLKGWVKNTTCGKVEGEVQGNEETLQKFFKDIDKGPR  93
              V G VQGVGFR F  + A E GLKGWV+N   G VE  VQG EE + KF + +  GP 
Sbjct  3    VLVTGRVQGVGFRPFVYRLAKELGLKGWVRNLPDGSVEIVVQGPEEDVDKFLEWLKSGPP  62

Query  94   LAHVVKLEKRDLSPEEGEDHFVV  116
             A V K+E  ++        F +
Sbjct  63   PARVDKVEVTEIDEPGDFSGFEI  85



Lambda      K        H        a         alpha
   0.320    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00011058

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00017503

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430088 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9...  112     1e-26


>CDD:430088 pfam08580, KAR9, Yeast cortical protein KAR9.  The KAR9 protein 
in Saccharomyces cerevisiae is a cytoskeletal protein required 
for karyogamy, correct positioning of the mitotic spindle 
and for orientation of cytoplasmic microtubules. KAR9 localizes 
at the shmoo tip in mating cells and at the tip of the 
growing bud in anaphase.
Length=684

 Score = 112 bits (282),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 47/97 (48%), Positives = 55/97 (57%), Gaps = 20/97 (21%)

Query  459  SNQLSQLTSITLPQPSSLAASIAGISNAPAAVKALTGAAEQIQIWIKKASDVLSGLDAED  518
            SN L QLT I L  P  L A IA  +NAPAAV+ALTGAAEQI  WI +            
Sbjct  2    SNDLFQLTKILLDIPLYLEALIAAFNNAPAAVRALTGAAEQILDWIFE------------  49

Query  519  DVEWAAAGGREGLEGVDKAITRFESLVHVYVNAIEQV  555
                    GREGL+ +DKAI   ES++ VY+ AIE V
Sbjct  50   --------GREGLQELDKAIENIESIISVYLKAIEAV  78



Lambda      K        H        a         alpha
   0.308    0.125    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 691920164


Query= TCONS_00011060

Length=506


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00011061

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460328 pfam01786, AOX, Alternative oxidase. The alternative o...  201     1e-66


>CDD:460328 pfam01786, AOX, Alternative oxidase.  The alternative oxidase 
is used as a second terminal oxidase in the mitochondria, electrons 
are transfered directly from reduced ubiquinol to oxygen 
forming water. This is not coupled to ATP synthesis and 
is not inhibited by cyanide, this pathway is a single step 
process. In rice the transcript levels of the alternative oxidase 
are increased by low temperature.
Length=218

 Score = 201 bits (514),  Expect = 1e-66, Method: Composition-based stats.
 Identities = 70/109 (64%), Positives = 82/109 (75%), Gaps = 7/109 (6%)

Query  87   YTEDQMRAVQIAHREAKNWSDWVALGTVRVLRWGMDFVTGYRHPKPGQEHDAKFRMTEQK  146
            YTE+++ +V++ HRE K +SD VA G V+ LRW  D +TGY+HP P         MTE+K
Sbjct  1    YTEEELESVKLTHREPKTFSDKVAYGLVKFLRWLFDLLTGYKHPPPP-------EMTERK  53

Query  147  WLTRFIFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNER  195
            WL R IFLE+VAGVPGMV GMLRHLRSLR MKRDNGWI TLLEEA NER
Sbjct  54   WLHRAIFLETVAGVPGMVAGMLRHLRSLRLMKRDNGWIHTLLEEAENER  102



Lambda      K        H        a         alpha
   0.322    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00011062

Length=506


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00017504

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00011063

Length=220
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460328 pfam01786, AOX, Alternative oxidase. The alternative o...  204     2e-67


>CDD:460328 pfam01786, AOX, Alternative oxidase.  The alternative oxidase 
is used as a second terminal oxidase in the mitochondria, electrons 
are transfered directly from reduced ubiquinol to oxygen 
forming water. This is not coupled to ATP synthesis and 
is not inhibited by cyanide, this pathway is a single step 
process. In rice the transcript levels of the alternative oxidase 
are increased by low temperature.
Length=218

 Score = 204 bits (522),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 70/109 (64%), Positives = 82/109 (75%), Gaps = 7/109 (6%)

Query  87   YTEDQMRAVQIAHREAKNWSDWVALGTVRVLRWGMDFVTGYRHPKPGQEHDAKFRMTEQK  146
            YTE+++ +V++ HRE K +SD VA G V+ LRW  D +TGY+HP P         MTE+K
Sbjct  1    YTEEELESVKLTHREPKTFSDKVAYGLVKFLRWLFDLLTGYKHPPPP-------EMTERK  53

Query  147  WLTRFIFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNER  195
            WL R IFLE+VAGVPGMV GMLRHLRSLR MKRDNGWI TLLEEA NER
Sbjct  54   WLHRAIFLETVAGVPGMVAGMLRHLRSLRLMKRDNGWIHTLLEEAENER  102



Lambda      K        H        a         alpha
   0.320    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00011064

Length=506


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00011065

Length=1184
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430088 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9...  807     0.0  


>CDD:430088 pfam08580, KAR9, Yeast cortical protein KAR9.  The KAR9 protein 
in Saccharomyces cerevisiae is a cytoskeletal protein required 
for karyogamy, correct positioning of the mitotic spindle 
and for orientation of cytoplasmic microtubules. KAR9 localizes 
at the shmoo tip in mating cells and at the tip of the 
growing bud in anaphase.
Length=684

 Score = 807 bits (2087),  Expect = 0.0, Method: Composition-based stats.
 Identities = 383/746 (51%), Positives = 455/746 (61%), Gaps = 104/746 (14%)

Query  459   SNQLSQLTSITLPQPSSLAASIAGISNAPAAVKALTGAAEQIQIWIKKASDVLSGLDAED  518
             SN L QLT I L  P  L A IA  +NAPAAV+ALTGAAEQI  WI +            
Sbjct  2     SNDLFQLTKILLDIPLYLEALIAAFNNAPAAVRALTGAAEQILDWIFE------------  49

Query  519   DVEWAAAGGREGLEGVDKAITRFESLVHVYVNAIEQVQLRQDIGNVSPDSLKTIVVQMDS  578
                     GREGL+ +DKAI   ES++ VY+ AIE VQLR DIG    D LKTIV QM+ 
Sbjct  50    --------GREGLQELDKAIENIESIISVYLKAIEAVQLRDDIG---ADDLKTIVAQMEE  98

Query  579   IIQSWAQIKGRLKGVKEQVELAMEWEELWANVLGDVGMEIESLSRLIFEMEEKRHFTMAN  638
             I   W ++K  L  VK+QV+LAMEWEELW +VLG +G+EIE   +LIFE+EEK+H +   
Sbjct  99    ISDLWLEVKKLLIVVKKQVDLAMEWEELWNSVLGSLGLEIEDCIKLIFELEEKKHSS---  155

Query  639   EQEGTSNGLDINELETIVEETPSN----GDMASKRFSMGPFFSEAPPLGMPIIQTPQDDS  694
                    GL I ELETIVE+ P N    G  ++KR S+  F              P D+ 
Sbjct  156   ----PKRGLPIFELETIVEKMPINDLTSGTFSNKRLSLPTF-------------NPLDEK  198

Query  695   -HSSLMALFARMQPLKASLDFLPMRLSMFQSRAERIFPSACEELEDRRNQLVKSYKTLEA  753
              ++ L+ L AR+QPL+ASLDFLPMR+SMFQ+R E++FPSACEELEDRR  L K YK LE+
Sbjct  199   LYNDLLELEARIQPLRASLDFLPMRISMFQTRCEQLFPSACEELEDRRENLEKKYKKLES  258

Query  754   DAEALRKELSEDRWILVFRNAGAQAHKMFESVERSIAKLQEGIETGLHVHNPAGLTKRIE  813
             DAEAL+KEL EDRW LVFRN G +  KM +SVERSIAKLQE +E     HNPAGL KRIE
Sbjct  259   DAEALKKELIEDRWNLVFRNLGKEIQKMCDSVERSIAKLQEALE-----HNPAGLGKRIE  313

Query  814   SYEAKKVHYVPAIERVISIIEKGVKDRLTVNGEIMRLLSDMSSRIDALKASI--------  865
             S EA K + V AIERVI+II+K  KDRLTVNGE+ RL +D+  + DAL   I        
Sbjct  314   SDEAGKQYKVCAIERVITIIQKAFKDRLTVNGELARLFNDLVPKWDALNELISNIGNPST  373

Query  866   ----------KVMDSSLDDLSLAKSQHLRDSISTIV-------TMDSPLASSVVDTPGSS  908
                       +V D  L++ S +K Q LRDS+S+I        T DSP       TPGSS
Sbjct  374   SVPLSIEKKDRVKDVLLEEPSNSKGQSLRDSLSSIFEDKNMHDTEDSPATLVANKTPGSS  433

Query  909   PASSVVMTPGNGLKGSATPLNPSSRRGSSV--GCSATRTTMSKVRRYSGLPQAASAL---  963
             P SSV+MTP N  KGS T   PSSRRGSS   G S+ R   SK+RR S LPQ AS L   
Sbjct  434   PPSSVIMTPVN--KGSKT---PSSRRGSSFDFGSSSERVINSKLRRESKLPQIASTLKQT  488

Query  964   --KSAIPKP----TFSATSPSKKDTAITPTPATRKISRVPPPPSPLNNRPRWTTSTNTND  1017
                S IP+     +   ++PS   T+ TPTPA R  SR  PPP    NRPRW  STNTND
Sbjct  489   KRPSKIPRASPNHSGFLSTPSNTATSETPTPALRPPSRPQPPPPG--NRPRWNASTNTND  546

Query  1018  LEVGHVYKSSTPFRKSSAPARTSRPSSTLPMPNPRRRDQSASPAPLTARSVSRVSSRLSS  1077
             L+VGH +K  T    S  P+R+SR SSTLP  +P  RD+S SPAP T RSVSR S R +S
Sbjct  547   LDVGHNFKPLTLTTPSPTPSRSSRSSSTLPPVSPLSRDKSRSPAP-TCRSVSRASRRRAS  605

Query  1078  RSPARGASPSPGRSILDPPPYSKLQKPDPAGLANTPRNRQSYAGMSFSRSVSQTHDSSML  1137
             R P R  SP+   S+LD PPY KL      GL  TPRNRQSYAG S SRSVS +      
Sbjct  606   RKPTRIGSPNSRTSLLDEPPYPKLTL--SKGLPRTPRNRQSYAGTSPSRSVSVSSGLGPQ  663

Query  1138  SPTKTTRPGTSLGHSGTGNRRISLLP  1163
                  TRPGTSLG     +R +S LP
Sbjct  664   -----TRPGTSLGSRFDESRLLSPLP  684



Lambda      K        H        a         alpha
   0.310    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1517710706


Query= TCONS_00017505

Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463812 pfam13233, Complex1_LYR_2, Complex1_LYR-like. This is ...  56.2    9e-13


>CDD:463812 pfam13233, Complex1_LYR_2, Complex1_LYR-like.  This is a family 
of proteins carrying the LYR motif of family Complex1_LYR, 
pfam05347, likely to be involved in Fe-S cluster biogenesis 
in mitochondria.
Length=79

 Score = 56.2 bits (136),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 17/43 (40%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query  34  YRRILRVHRRKLDPEMRILGDSYVKSEFRAHRNVENPLHIVRF  76
           YR +LR  R +L P  R  G  Y+++EFR H+++ +P  I  F
Sbjct  5   YRALLRELR-ELPPNGRSYGRQYLRAEFRRHKHLTDPEEIAEF  46



Lambda      K        H        a         alpha
   0.326    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00011066

Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463812 pfam13233, Complex1_LYR_2, Complex1_LYR-like. This is ...  56.2    9e-13


>CDD:463812 pfam13233, Complex1_LYR_2, Complex1_LYR-like.  This is a family 
of proteins carrying the LYR motif of family Complex1_LYR, 
pfam05347, likely to be involved in Fe-S cluster biogenesis 
in mitochondria.
Length=79

 Score = 56.2 bits (136),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 17/43 (40%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query  34  YRRILRVHRRKLDPEMRILGDSYVKSEFRAHRNVENPLHIVRF  76
           YR +LR  R +L P  R  G  Y+++EFR H+++ +P  I  F
Sbjct  5   YRALLRELR-ELPPNGRSYGRQYLRAEFRRHKHLTDPEEIAEF  46



Lambda      K        H        a         alpha
   0.326    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00011067

Length=265


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00011068

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00017506

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00011069

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00011070

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00011071

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00017509

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00017510

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00011072

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00011079

Length=481


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599678264


Query= TCONS_00017511

Length=481


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599678264


Query= TCONS_00011078

Length=787


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1008420336


Query= TCONS_00011075

Length=763


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 973496688


Query= TCONS_00011076

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00011077

Length=550


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684448024


Query= TCONS_00011074

Length=481


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599678264


Query= TCONS_00011081

Length=481


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599678264


Query= TCONS_00011080

Length=763


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 973496688


Query= TCONS_00011082

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00011084

Length=268


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00011083

Length=787


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1008420336


Query= TCONS_00011086

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A...  92.7    1e-23


>CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A.  This 
protein is found in eukaryotes. Proteins in this family are 
typically between 171 to 275 amino acids in length. Although 
the HsbA amino acid sequence suggests that HsbA may be hydrophilic, 
HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) 
surfaces in the presence of NaCl or CaCl2. 
When HsbA was adsorbed on the hydrophobic PBSA surfaces, 
it promoted PBSA degradation via the CutL1 polyesterase. CutL1 
interacts directly with HsbA attached to the hydrophobic 
QCM electrode surface. These results suggest that when HsbA 
is adsorbed onto the PBSA surface, it recruits CutL1, and that 
when CutL1 is accumulated on the PBSA surface, it stimulates 
PBSA degradation.
Length=123

 Score = 92.7 bits (231),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 56/122 (46%), Gaps = 4/122 (3%)

Query  37   AAVTSVVAAISSKVDTLDANIKAYTGGDT----SAIVDASADLISTINDGTSTVAAQPAL  92
            A V S +  IS+ V  LD  + AY GG        I+ AS  L+S I   T+   A P L
Sbjct  2    ATVISDLTTISTAVTALDTAVNAYNGGLGLLSALPILSASNALLSAIKKATTDAQASPPL  61

Query  93   SQVDALNLVNPILALTNKVKTTIDDLISKKSLIVEAGAGPTTYSQLLDQYTASSNLATTL  152
            +  +AL L   +  LT  +K  +D LI+KK     AG G    S L    TAS  L+  L
Sbjct  62   TLAEALALAQAVQTLTPDIKAALDALIAKKPAFDAAGLGSVVLSSLQLLKTASDALSDAL  121

Query  153  SG  154
              
Sbjct  122  VS  123



Lambda      K        H        a         alpha
   0.304    0.120    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00017515

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A...  92.7    2e-23


>CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A.  This 
protein is found in eukaryotes. Proteins in this family are 
typically between 171 to 275 amino acids in length. Although 
the HsbA amino acid sequence suggests that HsbA may be hydrophilic, 
HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) 
surfaces in the presence of NaCl or CaCl2. 
When HsbA was adsorbed on the hydrophobic PBSA surfaces, 
it promoted PBSA degradation via the CutL1 polyesterase. CutL1 
interacts directly with HsbA attached to the hydrophobic 
QCM electrode surface. These results suggest that when HsbA 
is adsorbed onto the PBSA surface, it recruits CutL1, and that 
when CutL1 is accumulated on the PBSA surface, it stimulates 
PBSA degradation.
Length=123

 Score = 92.7 bits (231),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 56/122 (46%), Gaps = 4/122 (3%)

Query  37   AAVTSVVAAISSKVDTLDANIKAYTGGDT----SAIVDASADLISTINDGTSTVAAQPAL  92
            A V S +  IS+ V  LD  + AY GG        I+ AS  L+S I   T+   A P L
Sbjct  2    ATVISDLTTISTAVTALDTAVNAYNGGLGLLSALPILSASNALLSAIKKATTDAQASPPL  61

Query  93   SQVDALNLVNPILALTNKVKTTIDDLISKKSLIVEAGAGPTTYSQLLDQYTASSNLATTL  152
            +  +AL L   +  LT  +K  +D LI+KK     AG G    S L    TAS  L+  L
Sbjct  62   TLAEALALAQAVQTLTPDIKAALDALIAKKPAFDAAGLGSVVLSSLQLLKTASDALSDAL  121

Query  153  SG  154
              
Sbjct  122  VS  123



Lambda      K        H        a         alpha
   0.304    0.119    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00011087

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A...  92.7    1e-23


>CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A.  This 
protein is found in eukaryotes. Proteins in this family are 
typically between 171 to 275 amino acids in length. Although 
the HsbA amino acid sequence suggests that HsbA may be hydrophilic, 
HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) 
surfaces in the presence of NaCl or CaCl2. 
When HsbA was adsorbed on the hydrophobic PBSA surfaces, 
it promoted PBSA degradation via the CutL1 polyesterase. CutL1 
interacts directly with HsbA attached to the hydrophobic 
QCM electrode surface. These results suggest that when HsbA 
is adsorbed onto the PBSA surface, it recruits CutL1, and that 
when CutL1 is accumulated on the PBSA surface, it stimulates 
PBSA degradation.
Length=123

 Score = 92.7 bits (231),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 56/122 (46%), Gaps = 4/122 (3%)

Query  37   AAVTSVVAAISSKVDTLDANIKAYTGGDT----SAIVDASADLISTINDGTSTVAAQPAL  92
            A V S +  IS+ V  LD  + AY GG        I+ AS  L+S I   T+   A P L
Sbjct  2    ATVISDLTTISTAVTALDTAVNAYNGGLGLLSALPILSASNALLSAIKKATTDAQASPPL  61

Query  93   SQVDALNLVNPILALTNKVKTTIDDLISKKSLIVEAGAGPTTYSQLLDQYTASSNLATTL  152
            +  +AL L   +  LT  +K  +D LI+KK     AG G    S L    TAS  L+  L
Sbjct  62   TLAEALALAQAVQTLTPDIKAALDALIAKKPAFDAAGLGSVVLSSLQLLKTASDALSDAL  121

Query  153  SG  154
              
Sbjct  122  VS  123



Lambda      K        H        a         alpha
   0.304    0.120    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00017516

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A...  85.0    1e-21


>CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A.  This 
protein is found in eukaryotes. Proteins in this family are 
typically between 171 to 275 amino acids in length. Although 
the HsbA amino acid sequence suggests that HsbA may be hydrophilic, 
HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) 
surfaces in the presence of NaCl or CaCl2. 
When HsbA was adsorbed on the hydrophobic PBSA surfaces, 
it promoted PBSA degradation via the CutL1 polyesterase. CutL1 
interacts directly with HsbA attached to the hydrophobic 
QCM electrode surface. These results suggest that when HsbA 
is adsorbed onto the PBSA surface, it recruits CutL1, and that 
when CutL1 is accumulated on the PBSA surface, it stimulates 
PBSA degradation.
Length=123

 Score = 85.0 bits (211),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 56/122 (46%), Gaps = 4/122 (3%)

Query  37   AAVTSVVAAISSKVDTLDANIKAYTGGDT----SAIVDASADLISTINDGTSTVAAQPAL  92
            A V S +  IS+ V  LD  + AY GG        I+ AS  L+S I   T+   A P L
Sbjct  2    ATVISDLTTISTAVTALDTAVNAYNGGLGLLSALPILSASNALLSAIKKATTDAQASPPL  61

Query  93   SQVDALNLVNPILALTNKVKTTIDDLISKKSLIVEAGAGPTTYSQLLDQYTASSNLATTL  152
            +  +AL L   +  LT  +K  +D LI+KK     AG G    S L    TAS  L+  L
Sbjct  62   TLAEALALAQAVQTLTPDIKAALDALIAKKPAFDAAGLGSVVLSSLQLLKTASDALSDAL  121

Query  153  SG  154
              
Sbjct  122  VS  123



Lambda      K        H        a         alpha
   0.305    0.118    0.321    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00011088

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A...  84.6    1e-21


>CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A.  This 
protein is found in eukaryotes. Proteins in this family are 
typically between 171 to 275 amino acids in length. Although 
the HsbA amino acid sequence suggests that HsbA may be hydrophilic, 
HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) 
surfaces in the presence of NaCl or CaCl2. 
When HsbA was adsorbed on the hydrophobic PBSA surfaces, 
it promoted PBSA degradation via the CutL1 polyesterase. CutL1 
interacts directly with HsbA attached to the hydrophobic 
QCM electrode surface. These results suggest that when HsbA 
is adsorbed onto the PBSA surface, it recruits CutL1, and that 
when CutL1 is accumulated on the PBSA surface, it stimulates 
PBSA degradation.
Length=123

 Score = 84.6 bits (210),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 56/122 (46%), Gaps = 4/122 (3%)

Query  37   AAVTSVVAAISSKVDTLDANIKAYTGGDT----SAIVDASADLISTINDGTSTVAAQPAL  92
            A V S +  IS+ V  LD  + AY GG        I+ AS  L+S I   T+   A P L
Sbjct  2    ATVISDLTTISTAVTALDTAVNAYNGGLGLLSALPILSASNALLSAIKKATTDAQASPPL  61

Query  93   SQVDALNLVNPILALTNKVKTTIDDLISKKSLIVEAGAGPTTYSQLLDQYTASSNLATTL  152
            +  +AL L   +  LT  +K  +D LI+KK     AG G    S L    TAS  L+  L
Sbjct  62   TLAEALALAQAVQTLTPDIKAALDALIAKKPAFDAAGLGSVVLSSLQLLKTASDALSDAL  121

Query  153  SG  154
              
Sbjct  122  VS  123



Lambda      K        H        a         alpha
   0.306    0.119    0.319    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00011089

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00011090

Length=348


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00017517

Length=332


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00011091

Length=333


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00011092

Length=441


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0801    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00011093

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00011094

Length=324


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00017518

Length=430


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521459360


Query= TCONS_00011095

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00017519

Length=332


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00011096

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00017520

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00011097

Length=1821
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463780 pfam13087, AAA_12, AAA domain. This family of domains ...  158     1e-44
CDD:466324 pfam20173, DUF6539, Family of unknown function (DUF653...  108     1e-28
CDD:404072 pfam13086, AAA_11, AAA domain. This family of domains ...  80.1    8e-17


>CDD:463780 pfam13087, AAA_12, AAA domain.  This family of domains contain 
a P-loop motif that is characteristic of the AAA superfamily. 
Many of the proteins in this family are conjugative transfer 
proteins.
Length=196

 Score = 158 bits (403),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 71/236 (30%), Positives = 102/236 (43%), Gaps = 48/236 (20%)

Query  836   LDVSLFERLVESQSAMGLGLPFSTLETQRRMHPSIAQLVRDTLY-PQIKDAESVSSYPEV  894
             LD SLFERL E             L+TQ RMHP I +      Y  ++KD  SV+  P  
Sbjct  1     LDRSLFERLQEL-----GPSAVVMLDTQYRMHPEIMEFPSKLFYGGKLKDGPSVAERPLP  55

Query  895   VGMRR-----RLFWLD--HREQEADAANTGPLASSHWNEYEIQMTMAVVNHLVRQGRYHS  947
                        L ++D    E+E     T     S+ NE E ++ + +V  L++ G    
Sbjct  56    DDFHLPDPLGPLVFIDVDGSEEEESDGGT-----SYSNEAEAELVVQLVEKLIKSGPEEP  110

Query  948   GDIAVITPYLGQLHRLRQLFSQHFAVTLGERDADQLDSAGFGAGETDVTPAARATLLKTL  1007
              DI VITPY  Q+  +R+L  +                                     +
Sbjct  111   SDIGVITPYRAQVRLIRKLLKRKL------------------------------GGKLEI  140

Query  1008  RVATIDNFQGEEAKVVVISLVRSNSQNRCGFLRTSNRINVLLSRAQHGMYIIGNSE  1063
              V T+D FQG E  V++ S VRSN +   GFL    R+NV L+RA+ G+ I+GN++
Sbjct  141   EVNTVDGFQGREKDVIIFSCVRSNEKGGIGFLSDPRRLNVALTRAKRGLIIVGNAK  196


>CDD:466324 pfam20173, DUF6539, Family of unknown function (DUF6539).  This 
presumed domain contains 6 conserved cysteines and histidines 
that presumably form a zinc binding site. The function 
of this domain is unknown.
Length=54

 Score = 108 bits (271),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 39/54 (72%), Gaps = 0/54 (0%)

Query  1755  MAREFHGTGHWYYCRNGHPFTIGECGGAMEQTACPECGEPVGGRAHRVAEGVTR  1808
             +A+ F GTGHWY C NGHP+ IGECGG ME + CPECG  +GG +H +  G TR
Sbjct  1     LAKAFRGTGHWYKCPNGHPYVIGECGGPMETSRCPECGATIGGESHNLVAGNTR  54


>CDD:404072 pfam13086, AAA_11, AAA domain.  This family of domains contain 
a P-loop motif that is characteristic of the AAA superfamily. 
Many of the proteins in this family are conjugative transfer 
proteins.
Length=248

 Score = 80.1 bits (198),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 71/323 (22%), Positives = 116/323 (36%), Gaps = 88/323 (27%)

Query  505  QARALVNSLQHR-IGLIQGPPGTGKSYTGVALIQVLLANKKQGKTNLGPMLCVTYTNHAL  563
            Q  A+ ++L      LIQGPPGTGK+ T V LI+ LL+           +L    +N A+
Sbjct  2    QREAIRSALSSSHFTLIQGPPGTGKTTTIVELIRQLLSYPATSAAAGPRILVCAPSNAAV  61

Query  564  DQLLEALIDKGVTSQ--IIRIG-SQSKSDKLRALNLRHIAKDAEKTKRERQDQYRLHCEI  620
            D +LE L+ KG      I+RIG   + S+ +  ++L ++             + +L+   
Sbjct  62   DNILERLLRKGQKYGPKIVRIGHPAAISEAVLPVSLDYLV------------ESKLN---  106

Query  621  EACEDKFSTLKINQDLLATHLIPHLQELYPRYYSGLFGKDEDGWKRVGHGKPSAVIRRWV  680
               E+    +K     L                                           
Sbjct  107  --NEEDAQIVKDISKELEKLA---------------------------------------  125

Query  681  QAGGPGDEIRSFD-VLTSLNPFQLSRKEREELYQVWTKDVTNLVYDKVMKLCSTHHMAKA  739
                    +R+F+  +      +   K++ +L Q            +  KL S     + 
Sbjct  126  ------KALRAFEKEIIVEKLLKSRNKDKSKLEQ------------ERRKLRSERKELRK  167

Query  740  NLDNVRDEVDLRCLADADVIGVTTSGLARNLNMLRKLQS----KVVMCEEAGEVLEAHLL  795
             L      ++   L +A ++  T SG        R L S     VV+ +EA + LE   L
Sbjct  168  ELRRREQSLEREILDEAQIVCSTLSGAGS-----RLLSSLANFDVVIIDEAAQALEPSTL  222

Query  796  TALLPSVEHAILIGDHLQLRPQV  818
              LL   +  +L+GD  QL P V
Sbjct  223  IPLLRGPKKVVLVGDPKQLPPTV  245



Lambda      K        H        a         alpha
   0.321    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2301534604


Query= TCONS_00011098

Length=1914
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463780 pfam13087, AAA_12, AAA domain. This family of domains ...  158     2e-44
CDD:466324 pfam20173, DUF6539, Family of unknown function (DUF653...  108     9e-29
CDD:404072 pfam13086, AAA_11, AAA domain. This family of domains ...  80.5    8e-17


>CDD:463780 pfam13087, AAA_12, AAA domain.  This family of domains contain 
a P-loop motif that is characteristic of the AAA superfamily. 
Many of the proteins in this family are conjugative transfer 
proteins.
Length=196

 Score = 158 bits (402),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 71/236 (30%), Positives = 102/236 (43%), Gaps = 48/236 (20%)

Query  929   LDVSLFERLVESQSAMGLGLPFSTLETQRRMHPSIAQLVRDTLY-PQIKDAESVSSYPEV  987
             LD SLFERL E             L+TQ RMHP I +      Y  ++KD  SV+  P  
Sbjct  1     LDRSLFERLQEL-----GPSAVVMLDTQYRMHPEIMEFPSKLFYGGKLKDGPSVAERPLP  55

Query  988   VGMRR-----RLFWLD--HREQEADAANTGPLASSHWNEYEIQMTMAVVNHLVRQGRYHS  1040
                        L ++D    E+E     T     S+ NE E ++ + +V  L++ G    
Sbjct  56    DDFHLPDPLGPLVFIDVDGSEEEESDGGT-----SYSNEAEAELVVQLVEKLIKSGPEEP  110

Query  1041  GDIAVITPYLGQLHRLRQLFSQHFAVTLGERDADQLDSAGFGAGETDVTPAARATLLKTL  1100
              DI VITPY  Q+  +R+L  +                                     +
Sbjct  111   SDIGVITPYRAQVRLIRKLLKRKL------------------------------GGKLEI  140

Query  1101  RVATIDNFQGEEAKVVVISLVRSNSQNRCGFLRTSNRINVLLSRAQHGMYIIGNSE  1156
              V T+D FQG E  V++ S VRSN +   GFL    R+NV L+RA+ G+ I+GN++
Sbjct  141   EVNTVDGFQGREKDVIIFSCVRSNEKGGIGFLSDPRRLNVALTRAKRGLIIVGNAK  196


>CDD:466324 pfam20173, DUF6539, Family of unknown function (DUF6539).  This 
presumed domain contains 6 conserved cysteines and histidines 
that presumably form a zinc binding site. The function 
of this domain is unknown.
Length=54

 Score = 108 bits (271),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 39/54 (72%), Gaps = 0/54 (0%)

Query  1848  MAREFHGTGHWYYCRNGHPFTIGECGGAMEQTACPECGEPVGGRAHRVAEGVTR  1901
             +A+ F GTGHWY C NGHP+ IGECGG ME + CPECG  +GG +H +  G TR
Sbjct  1     LAKAFRGTGHWYKCPNGHPYVIGECGGPMETSRCPECGATIGGESHNLVAGNTR  54


>CDD:404072 pfam13086, AAA_11, AAA domain.  This family of domains contain 
a P-loop motif that is characteristic of the AAA superfamily. 
Many of the proteins in this family are conjugative transfer 
proteins.
Length=248

 Score = 80.5 bits (199),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 71/323 (22%), Positives = 116/323 (36%), Gaps = 88/323 (27%)

Query  598  QARALVNSLQHR-IGLIQGPPGTGKSYTGVALIQVLLANKKQGKTNLGPMLCVTYTNHAL  656
            Q  A+ ++L      LIQGPPGTGK+ T V LI+ LL+           +L    +N A+
Sbjct  2    QREAIRSALSSSHFTLIQGPPGTGKTTTIVELIRQLLSYPATSAAAGPRILVCAPSNAAV  61

Query  657  DQLLEALIDKGVTSQ--IIRIG-SQSKSDKLRALNLRHIAKDAEKTKRERQDQYRLHCEI  713
            D +LE L+ KG      I+RIG   + S+ +  ++L ++             + +L+   
Sbjct  62   DNILERLLRKGQKYGPKIVRIGHPAAISEAVLPVSLDYLV------------ESKLN---  106

Query  714  EACEDKFSTLKINQDLLATHLIPHLQELYPRYYSGLFGKDEDGWKRVGHGKPSAVIRRWV  773
               E+    +K     L                                           
Sbjct  107  --NEEDAQIVKDISKELEKLA---------------------------------------  125

Query  774  QAGGPGDEIRSFD-VLTSLNPFQLSRKEREELYQVWTKDVTNLVYDKVMKLCSTHHMAKA  832
                    +R+F+  +      +   K++ +L Q            +  KL S     + 
Sbjct  126  ------KALRAFEKEIIVEKLLKSRNKDKSKLEQ------------ERRKLRSERKELRK  167

Query  833  NLDNVRDEVDLRCLADADVIGVTTSGLARNLNMLRKLQS----KVVMCEEAGEVLEAHLL  888
             L      ++   L +A ++  T SG        R L S     VV+ +EA + LE   L
Sbjct  168  ELRRREQSLEREILDEAQIVCSTLSGAGS-----RLLSSLANFDVVIIDEAAQALEPSTL  222

Query  889  TALLPSVEHAILIGDHLQLRPQV  911
              LL   +  +L+GD  QL P V
Sbjct  223  IPLLRGPKKVVLVGDPKQLPPTV  245



Lambda      K        H        a         alpha
   0.321    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2425905736


Query= TCONS_00011099

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         99.7    1e-25


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 99.7 bits (249),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 51/161 (32%), Positives = 74/161 (46%), Gaps = 26/161 (16%)

Query  4    PAECRGTLLVLEEFCIVLGIVIAYWITYGTRFMAGEWSWRLPFLLQMIPGFVLAGGVLAL  63
            P + RG L  L +  I  GI++AY    G    +    WR+P  LQ++P  +L  G+L L
Sbjct  132  PKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLLFL  191

Query  64   PFSPRWLAAKGRNEEALQSLSKLRRLPPSDKRIRQEYLDIQAEVRFHQELNAEKHPTLQG  123
            P SPRWL  KGR EEA + L+KLR +P  D+ + +    ++A                  
Sbjct  192  PESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEA--------------  237

Query  124  GGTRQSFLLEMASWADCFK--KGCWRRTHVGMGLMFFQQVS  162
                     E ASW       K   +R  +G+ L  FQQ++
Sbjct  238  ---------EKASW-KELFSTKTRRQRLLIGVMLQIFQQLT  268



Lambda      K        H        a         alpha
   0.326    0.141    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00017521

Length=159
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         75.0    5e-17


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 75.0 bits (185),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 7/115 (6%)

Query  51   CAACSTLGGLVFGYDQGVVSVILVMDQFLERFP---EVAPNAAGAGFWKGLMTAMIELGA  107
             A  + LGG +FGYD GV+   L +  F + F     V+  AA      GL+ ++  +G 
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAA-LSVLSGLIVSIFSVGC  59

Query  108  LLGALNQGWIADKISRRYSIVVAVIIFTIGSILQTAAVDYA---MLTVARFIGGV  159
             +G+L  G + D+  R+ S+++A ++F IG++LQ AA        L V R + G+
Sbjct  60   FIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGI  114



Lambda      K        H        a         alpha
   0.325    0.142    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00011100

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430120 pfam08636, Pkr1, ER protein Pkr1. Pkr1 has been identi...  99.5    9e-29


>CDD:430120 pfam08636, Pkr1, ER protein Pkr1.  Pkr1 has been identified as 
an ER protein of unknown function.
Length=69

 Score = 99.5 bits (249),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 46/68 (68%), Positives = 56/68 (82%), Gaps = 0/68 (0%)

Query  4   FVEDLWSSIFTPGPTPSLLIATNVTFAALQVLLLALLLATYSIHFVVLSILSAALWWSIN  63
           F +DLW SIFTPG TP+LLIAT+ +FAALQ++LLALL ATYSIHF+VL +L+  LW SIN
Sbjct  1   FFQDLWESIFTPGTTPTLLIATHASFAALQLVLLALLFATYSIHFIVLLVLALGLWGSIN  60

Query  64  WFAQELSQ  71
           WF  EL +
Sbjct  61  WFIAELKK  68



Lambda      K        H        a         alpha
   0.309    0.123    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00011101

Length=894
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462556 pfam08672, ANAPC2, Anaphase promoting complex (APC) su...  99.2    8e-26
CDD:459983 pfam00888, Cullin, Cullin family                           76.1    1e-14


>CDD:462556 pfam08672, ANAPC2, Anaphase promoting complex (APC) subunit 2. 
 The anaphase promoting complex or cyclosome (APC2) is an 
E3 ubiquitin ligase which is part of the SCF family of ubiquitin 
ligases. Ubiquitin ligases catalyze the transfer of ubiquitin 
from the ubiquitin conjugating enzyme (E2), to the substrate 
protein.
Length=60

 Score = 99.2 bits (248),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 38/61 (62%), Positives = 46/61 (75%), Gaps = 3/61 (5%)

Query  834  FIVGMLTNQGAMPLQRIVMMLKIAVP--GGFPFSNEELREFLAGMVAKGKLEIISGGNYK  891
            +IVGMLTN G++PL RI  MLK+ VP  GG+P S EEL EFL  +V +GKLE +SGG YK
Sbjct  1    YIVGMLTNLGSLPLDRIHSMLKMFVPKDGGYPKSLEELEEFLDELVEEGKLE-LSGGKYK  59

Query  892  L  892
            L
Sbjct  60   L  60


>CDD:459983 pfam00888, Cullin, Cullin family.  
Length=610

 Score = 76.1 bits (188),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 85/203 (42%), Gaps = 33/203 (16%)

Query  566  ISLF---ESKETFVREMQNMLAERLLQKR-AEFEQETSVLELLKVRFGDNALQACEVMLR  621
            I+LF   + K+ F    +  LA+RLL  + A  + E S++  LK   G       E M +
Sbjct  384  ITLFRYIQDKDVFEAFYKKHLAKRLLLGKSASDDAERSMISKLKEECGSEFTSKLEGMFK  443

Query  622  DIFDSRRVDAVVRNDQGLVQSEDDTRPELHAKILSHFFWPEFPAQQFKVPPEIAALQERY  681
            D+  S+ +    +      +S      +L   +L+   WP +    F +PPE+    ER+
Sbjct  444  DMELSKDLMKEFKEHLSENKSSKKG-IDLSVNVLTSGAWPTYLTSDFILPPELEKAIERF  502

Query  682  ATGFGSLKQS-RKLTWLNGMGQVTV----------ELDLEDRVFVDEVTTWQATVIYAFG  730
               F   K S RKLTWL+ +G   +          EL          V+T+Q  ++  F 
Sbjct  503  -EKFYLSKHSGRKLTWLHSLGTAELKATFPKGKKHEL---------NVSTYQMAILLLFN  552

Query  731  SEEGATKTVDGLS-AELGMSTAL  752
             +       D LS  E+  +T L
Sbjct  553  DDG------DSLSYEEIQEATGL  569



Lambda      K        H        a         alpha
   0.319    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1146975686


Query= TCONS_00011102

Length=894
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462556 pfam08672, ANAPC2, Anaphase promoting complex (APC) su...  99.2    8e-26
CDD:459983 pfam00888, Cullin, Cullin family                           76.1    1e-14


>CDD:462556 pfam08672, ANAPC2, Anaphase promoting complex (APC) subunit 2. 
 The anaphase promoting complex or cyclosome (APC2) is an 
E3 ubiquitin ligase which is part of the SCF family of ubiquitin 
ligases. Ubiquitin ligases catalyze the transfer of ubiquitin 
from the ubiquitin conjugating enzyme (E2), to the substrate 
protein.
Length=60

 Score = 99.2 bits (248),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 38/61 (62%), Positives = 46/61 (75%), Gaps = 3/61 (5%)

Query  834  FIVGMLTNQGAMPLQRIVMMLKIAVP--GGFPFSNEELREFLAGMVAKGKLEIISGGNYK  891
            +IVGMLTN G++PL RI  MLK+ VP  GG+P S EEL EFL  +V +GKLE +SGG YK
Sbjct  1    YIVGMLTNLGSLPLDRIHSMLKMFVPKDGGYPKSLEELEEFLDELVEEGKLE-LSGGKYK  59

Query  892  L  892
            L
Sbjct  60   L  60


>CDD:459983 pfam00888, Cullin, Cullin family.  
Length=610

 Score = 76.1 bits (188),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 85/203 (42%), Gaps = 33/203 (16%)

Query  566  ISLF---ESKETFVREMQNMLAERLLQKR-AEFEQETSVLELLKVRFGDNALQACEVMLR  621
            I+LF   + K+ F    +  LA+RLL  + A  + E S++  LK   G       E M +
Sbjct  384  ITLFRYIQDKDVFEAFYKKHLAKRLLLGKSASDDAERSMISKLKEECGSEFTSKLEGMFK  443

Query  622  DIFDSRRVDAVVRNDQGLVQSEDDTRPELHAKILSHFFWPEFPAQQFKVPPEIAALQERY  681
            D+  S+ +    +      +S      +L   +L+   WP +    F +PPE+    ER+
Sbjct  444  DMELSKDLMKEFKEHLSENKSSKKG-IDLSVNVLTSGAWPTYLTSDFILPPELEKAIERF  502

Query  682  ATGFGSLKQS-RKLTWLNGMGQVTV----------ELDLEDRVFVDEVTTWQATVIYAFG  730
               F   K S RKLTWL+ +G   +          EL          V+T+Q  ++  F 
Sbjct  503  -EKFYLSKHSGRKLTWLHSLGTAELKATFPKGKKHEL---------NVSTYQMAILLLFN  552

Query  731  SEEGATKTVDGLS-AELGMSTAL  752
             +       D LS  E+  +T L
Sbjct  553  DDG------DSLSYEEIQEATGL  569



Lambda      K        H        a         alpha
   0.319    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1146975686


Query= TCONS_00011103

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00011104

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431196 pfam10282, Lactonase, Lactonase, 7-bladed beta-propell...  299     4e-100


>CDD:431196 pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller.  This 
entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type 
(EC:3.1.1.31) which hydrolyze 6-phosphogluconolactone 
to 6-phosphogluconate. The entry also contains the fungal 
muconate lactonising enzyme carboxy-cis,cis-muconate cyclase 
(EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which 
convert cis,cis-muconates to muconolactones and vice versa 
as part of the microbial beta-ketoadipate pathway. Structures 
of proteins in this family have revealed a 7-bladed beta-propeller 
fold.
Length=340

 Score = 299 bits (768),  Expect = 4e-100, Method: Composition-based stats.
 Identities = 122/379 (32%), Positives = 174/379 (46%), Gaps = 48/379 (13%)

Query  21   TLYATHY----SGAVYTLSLTHRNGKYNLSLASDMTTCGGMPSWLTLDRDTTTSTLYCSD  76
            TLY   Y    S  +Y L+L    G   L+L        G PS+L L  D  T  LY  +
Sbjct  1    TLYVGTYTKGDSKGIYVLTLDTETGA--LTLLGL-VAEVGNPSYLALSPDGRT--LYAVN  55

Query  77   ETGDATTNGTLTSYAVGKD-GSLTQLAKVVDVGGGVHSVVYEGEGGAKYIAIAHYSGSAV  135
            E GD    G + ++ +  D G+LT L +V    GG        +   +++ +A+Y G +V
Sbjct  56   EEGD---QGGVAAFRIDPDSGALTLLNQVPT--GGASPCHLSVDPDGRFLFVANYHGGSV  110

Query  136  STFALPLESG-DEPLQILRYQTPPGPLPQQDSSHPHQIILDPTGSFILVPDLGTDQVRVY  194
            S F L  +    E  Q+++++    P  +Q+S HPH + L P G F++VPDLGTD+VRVY
Sbjct  111  SVFPLDADGSLGELSQVVQHEGSGPPPERQESPHPHSVDLTPDGKFLVVPDLGTDRVRVY  170

Query  195  AIDKQSGQLNTCPSLNYTPGSGPRHGLFWSSHHSHRDGLRIQKTAALTAPHTILYTVSEL  254
             +D   G+L    S+   PGSGPRH  F  +                       Y V+EL
Sbjct  171  KLDAGGGKLTPPASVQTPPGSGPRHLAFHPN-------------------GKYAYVVNEL  211

Query  255  SRHFHAFAVSYLPSGCLGFRETQDFVPYPGGEITEGASLAELQQA--GSNLYASIRSDHA  312
            S     F   Y P+    F E Q     P G  T     A ++ +  G  LY S R    
Sbjct  212  SSTVTVF--EYDPATG-TFEELQTVSTLPEG-FTGTNGAAAIRVSPDGKFLYVSNR----  263

Query  313  FSGNDSLATLNRS-QNGTVTFQELTSSYGLVPRTFVINRAGTLVAIGDQSSSNVAIVSRD  371
              G+DS+A        GT+T  E  S+ G  PR F I+  G  + + +Q S NV +  RD
Sbjct  264  --GHDSIAVFAVDEAGGTLTLVERVSTEGDFPRDFNIDPDGKFLVVANQDSDNVTVFRRD  321

Query  372  SASGKLGDLVANLQVGEPG  390
              +GKL  L  +++V EP 
Sbjct  322  PETGKLTLLGKDIEVPEPV  340



Lambda      K        H        a         alpha
   0.314    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00011105

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431196 pfam10282, Lactonase, Lactonase, 7-bladed beta-propell...  298     7e-100


>CDD:431196 pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller.  This 
entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type 
(EC:3.1.1.31) which hydrolyze 6-phosphogluconolactone 
to 6-phosphogluconate. The entry also contains the fungal 
muconate lactonising enzyme carboxy-cis,cis-muconate cyclase 
(EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which 
convert cis,cis-muconates to muconolactones and vice versa 
as part of the microbial beta-ketoadipate pathway. Structures 
of proteins in this family have revealed a 7-bladed beta-propeller 
fold.
Length=340

 Score = 298 bits (766),  Expect = 7e-100, Method: Composition-based stats.
 Identities = 122/379 (32%), Positives = 174/379 (46%), Gaps = 48/379 (13%)

Query  16   TLYATHY----SGAVYTLSLTHRNGKYNLSLASDMTTCGGMPSWLTLDRDTTTSTLYCSD  71
            TLY   Y    S  +Y L+L    G   L+L        G PS+L L  D  T  LY  +
Sbjct  1    TLYVGTYTKGDSKGIYVLTLDTETGA--LTLLGL-VAEVGNPSYLALSPDGRT--LYAVN  55

Query  72   ETGDATTNGTLTSYAVGKD-GSLTQLAKVVDVGGGVHSVVYEGEGGAKYIAIAHYSGSAV  130
            E GD    G + ++ +  D G+LT L +V    GG        +   +++ +A+Y G +V
Sbjct  56   EEGD---QGGVAAFRIDPDSGALTLLNQVPT--GGASPCHLSVDPDGRFLFVANYHGGSV  110

Query  131  STFALPLESG-DEPLQILRYQTPPGPLPQQDSSHPHQIILDPTGSFILVPDLGTDQVRVY  189
            S F L  +    E  Q+++++    P  +Q+S HPH + L P G F++VPDLGTD+VRVY
Sbjct  111  SVFPLDADGSLGELSQVVQHEGSGPPPERQESPHPHSVDLTPDGKFLVVPDLGTDRVRVY  170

Query  190  AIDKQSGQLNTCPSLNYTPGSGPRHGLFWSSHHSHRDGLRIQKTAALTAPHTILYTVSEL  249
             +D   G+L    S+   PGSGPRH  F  +                       Y V+EL
Sbjct  171  KLDAGGGKLTPPASVQTPPGSGPRHLAFHPN-------------------GKYAYVVNEL  211

Query  250  SRHFHAFAVSYLPSGCLGFRETQDFVPYPGGEITEGASLAELQQA--GSNLYASIRSDHA  307
            S     F   Y P+    F E Q     P G  T     A ++ +  G  LY S R    
Sbjct  212  SSTVTVF--EYDPATG-TFEELQTVSTLPEG-FTGTNGAAAIRVSPDGKFLYVSNR----  263

Query  308  FSGNDSLATLNRS-QNGTVTFQELTSSYGLVPRTFVINRAGTLVAIGDQSSSNVAIVSRD  366
              G+DS+A        GT+T  E  S+ G  PR F I+  G  + + +Q S NV +  RD
Sbjct  264  --GHDSIAVFAVDEAGGTLTLVERVSTEGDFPRDFNIDPDGKFLVVANQDSDNVTVFRRD  321

Query  367  SASGKLGDLVANLQVGEPG  385
              +GKL  L  +++V EP 
Sbjct  322  PETGKLTLLGKDIEVPEPV  340



Lambda      K        H        a         alpha
   0.314    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00011106

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00011107

Length=298


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00011109

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00011108

Length=440


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00017522

Length=350


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00011110

Length=350


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00011111

Length=361


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00017523

Length=968
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  96.4    1e-22


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 96.4 bits (240),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 72/316 (23%), Positives = 111/316 (35%), Gaps = 61/316 (19%)

Query  111  FDLFQSHYAFILPFLHPASFLGQIRQLSGATSSSTVPNSENNRDTGQSPPAPKTEPNPLI  170
            F  F   +    P LH  SFL                     RD  +   +P    +PL+
Sbjct  5    FKNFHPQF----PILHRPSFL---------------------RDYFELFSSPSNYASPLL  39

Query  171  PLGVLALTARFHPHLVAYHSPSSPGNPSNPLVASEFYAAALRSRLAGVDGASMAIPDLTR  230
             L +LAL A F        SP++  + S    A++     LR+ +   +  S     L  
Sbjct  40   LLAILALGALFSE------SPTARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWI  93

Query  231  VQALLMLALHEWGMCRGKSAWLYVGMAIRLSQAMGLPFELENEVSSRDDPRSPAFKTETE  290
            +QALL+L L+E G    K  W Y G+AIRL++++GL          RD            
Sbjct  94   LQALLLLELYELGTGDRKLHWRYHGLAIRLARSLGL---------HRDPSYV--------  136

Query  291  LFGVRRGPEPKEQTSDDVIAQETKRRTFWACFILDRCLSSGKYRPRMIRVKELGIQLPSD  350
                     P  +   +    E +RR FWACF LDR +S    RP ++   ++ + LP D
Sbjct  137  --------SPSWKLWIEEA--ELRRRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPCD  186

Query  351  NAFA-FGERVRTARLNEPSARRPPSFGSQGMQIPSIRQSIGGFSDDKLPNNVPPDNKPWS  409
            +      +      L   S             +  + + +       L      D +   
Sbjct  187  DDDLWESDSADEVTLPLISLESKSIKPPL--FLIKLSKILSKILGSLLSIRSTLDQRDLQ  244

Query  410  PISRRKDSSEDEIDRW  425
                     E  +D W
Sbjct  245  LKLSWVRELERALDNW  260



Lambda      K        H        a         alpha
   0.317    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1234643872


Query= TCONS_00017524

Length=968
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  96.4    1e-22


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 96.4 bits (240),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 72/316 (23%), Positives = 111/316 (35%), Gaps = 61/316 (19%)

Query  111  FDLFQSHYAFILPFLHPASFLGQIRQLSGATSSSTVPNSENNRDTGQSPPAPKTEPNPLI  170
            F  F   +    P LH  SFL                     RD  +   +P    +PL+
Sbjct  5    FKNFHPQF----PILHRPSFL---------------------RDYFELFSSPSNYASPLL  39

Query  171  PLGVLALTARFHPHLVAYHSPSSPGNPSNPLVASEFYAAALRSRLAGVDGASMAIPDLTR  230
             L +LAL A F        SP++  + S    A++     LR+ +   +  S     L  
Sbjct  40   LLAILALGALFSE------SPTARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWI  93

Query  231  VQALLMLALHEWGMCRGKSAWLYVGMAIRLSQAMGLPFELENEVSSRDDPRSPAFKTETE  290
            +QALL+L L+E G    K  W Y G+AIRL++++GL          RD            
Sbjct  94   LQALLLLELYELGTGDRKLHWRYHGLAIRLARSLGL---------HRDPSYV--------  136

Query  291  LFGVRRGPEPKEQTSDDVIAQETKRRTFWACFILDRCLSSGKYRPRMIRVKELGIQLPSD  350
                     P  +   +    E +RR FWACF LDR +S    RP ++   ++ + LP D
Sbjct  137  --------SPSWKLWIEEA--ELRRRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPCD  186

Query  351  NAFA-FGERVRTARLNEPSARRPPSFGSQGMQIPSIRQSIGGFSDDKLPNNVPPDNKPWS  409
            +      +      L   S             +  + + +       L      D +   
Sbjct  187  DDDLWESDSADEVTLPLISLESKSIKPPL--FLIKLSKILSKILGSLLSIRSTLDQRDLQ  244

Query  410  PISRRKDSSEDEIDRW  425
                     E  +D W
Sbjct  245  LKLSWVRELERALDNW  260



Lambda      K        H        a         alpha
   0.317    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1234643872


Query= TCONS_00011112

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase. This...  466     4e-164
CDD:400371 pfam07983, X8, X8 domain. The X8 domain domain contain...  115     7e-32 


>CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase.  This is a 
family of glycosylphosphatidylinositol-anchored beta(1-3)glucanosyltransferases. 
The active site residues in the Aspergillus 
fumigatus example are the two glutamate residues at 160 
and 261.
Length=315

 Score = 466 bits (1201),  Expect = 4e-164, Method: Composition-based stats.
 Identities = 184/320 (58%), Positives = 223/320 (70%), Gaps = 9/320 (3%)

Query  12   LVGSALATLPVIEAKGNKFFYSNNGTEFFIRGVAYQQEYQANGTSTENSDYTDPLANVDN  71
               +A A  P IE KGNKFF S NG +F+I+GV YQ      G S+ENS   DPLA+ D 
Sbjct  1    ATSAAFAATPPIEIKGNKFFDSKNGEQFYIKGVDYQP-----GGSSENSTLVDPLADADV  55

Query  72   CKRDIPYLKQLRTNVIRTYAVDPTKDHDECMKLLDDAGIYLITDLSAPSESINRADPA--  129
            CKRDIPY K+L  N IR YAVDP+ +HDECMK L DAGIY+I DL+ P ESINRADPA  
Sbjct  56   CKRDIPYFKELGINTIRVYAVDPSLNHDECMKALSDAGIYVILDLNTPKESINRADPAGS  115

Query  130  WNTDLYKRYTSVIDAFAKYSNVIGFFAGNEVANDNNNTNSIAYVKAAVRDMKSYIKSKDY  189
            +N D  +RY +VIDAF  Y+NV+GFFAGNEV ND +NT++  YVKAA+RDMK YI    Y
Sbjct  116  YNVDYLERYFAVIDAFKNYTNVLGFFAGNEVTNDASNTDASPYVKAAIRDMKQYISKHKY  175

Query  190  RSSLLVGYATDDDAHIRADLADYLVCGDKESSIDMFGYNIYEWCGDSSFEKSGYKDRTEE  249
            R+ + VGY+  DDA  R  LADY  CGD +   D FG N+YEWCG SSF+ SGY DRT+E
Sbjct  176  RT-IPVGYSAADDADTRVQLADYFACGDDDERADFFGINMYEWCGYSSFKTSGYDDRTKE  234

Query  250  FSKYPVPAFFSEYGCIDPKPRKFTDVAALYGPQMNDVWSGGIVYMYFQEANDYGLVSVSG  309
            F  Y +P FFSEYGC    PR FT+V+ALY   M  V+SGG+VY Y +EAN+YGLVS+ G
Sbjct  235  FENYSIPVFFSEYGCNKVTPRPFTEVSALYSSDMTSVFSGGLVYEYSEEANNYGLVSIDG  294

Query  310  DNVK-TKEDFSYLSVQMQKV  328
            D+V  T  DF+ L  +  K+
Sbjct  295  DDVVTTLADFNNLKSEYAKI  314


>CDD:400371 pfam07983, X8, X8 domain.  The X8 domain domain contains at least 
6 conserved cysteine residues that presumably form three 
disulphide bridges. The domain is found in an Olive pollen 
allergen as well as at the C-terminus of several families of 
glycosyl hydrolases. This domain may be involved in carbohydrate 
binding. This domain is characteristic of GPI-anchored 
domains.
Length=76

 Score = 115 bits (290),  Expect = 7e-32, Method: Composition-based stats.
 Identities = 40/75 (53%), Positives = 50/75 (67%), Gaps = 0/75 (0%)

Query  377  LSCTVKDSVDEKEYGDLFDYLCAAGVCGGINSNSTSGDYGAYSVCSAKQKLSFVMNQYYK  436
            L C  KDSVD+++  DLFDY C    C GI +N T+G YG YS C+ KQ LS+  N YY+
Sbjct  1    LWCVAKDSVDDEDLQDLFDYACGQADCSGIQANGTTGKYGCYSPCTVKQHLSYAFNSYYQ  60

Query  437  KNNKAATACDFDGKA  451
            K  KA++ACDF G A
Sbjct  61   KQGKASSACDFSGSA  75



Lambda      K        H        a         alpha
   0.314    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00017525

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase. This...  337     9e-115
CDD:400371 pfam07983, X8, X8 domain. The X8 domain domain contain...  114     7e-32 


>CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase.  This is a 
family of glycosylphosphatidylinositol-anchored beta(1-3)glucanosyltransferases. 
The active site residues in the Aspergillus 
fumigatus example are the two glutamate residues at 160 
and 261.
Length=315

 Score = 337 bits (865),  Expect = 9e-115, Method: Composition-based stats.
 Identities = 133/230 (58%), Positives = 163/230 (71%), Gaps = 4/230 (2%)

Query  1    MKLLDDAGIYLITDLSAPSESINRADPA--WNTDLYKRYTSVIDAFAKYSNVIGFFAGNE  58
            MK L DAGIY+I DL+ P ESINRADPA  +N D  +RY +VIDAF  Y+NV+GFFAGNE
Sbjct  86   MKALSDAGIYVILDLNTPKESINRADPAGSYNVDYLERYFAVIDAFKNYTNVLGFFAGNE  145

Query  59   VANDNNNTNSIAYVKAAVRDMKSYIKSKDYRSSLLVGYATDDDAHIRADLADYLVCGDKE  118
            V ND +NT++  YVKAA+RDMK YI    YR+ + VGY+  DDA  R  LADY  CGD +
Sbjct  146  VTNDASNTDASPYVKAAIRDMKQYISKHKYRT-IPVGYSAADDADTRVQLADYFACGDDD  204

Query  119  SSIDMFGYNIYEWCGDSSFEKSGYKDRTEEFSKYPVPAFFSEYGCIDPKPRKFTDVAALY  178
               D FG N+YEWCG SSF+ SGY DRT+EF  Y +P FFSEYGC    PR FT+V+ALY
Sbjct  205  ERADFFGINMYEWCGYSSFKTSGYDDRTKEFENYSIPVFFSEYGCNKVTPRPFTEVSALY  264

Query  179  GPQMNDVWSGGIVYMYFQEANDYGLVSVSGDNVK-TKEDFSYLSVQMQKV  227
               M  V+SGG+VY Y +EAN+YGLVS+ GD+V  T  DF+ L  +  K+
Sbjct  265  SSDMTSVFSGGLVYEYSEEANNYGLVSIDGDDVVTTLADFNNLKSEYAKI  314


>CDD:400371 pfam07983, X8, X8 domain.  The X8 domain domain contains at least 
6 conserved cysteine residues that presumably form three 
disulphide bridges. The domain is found in an Olive pollen 
allergen as well as at the C-terminus of several families of 
glycosyl hydrolases. This domain may be involved in carbohydrate 
binding. This domain is characteristic of GPI-anchored 
domains.
Length=76

 Score = 114 bits (287),  Expect = 7e-32, Method: Composition-based stats.
 Identities = 40/75 (53%), Positives = 50/75 (67%), Gaps = 0/75 (0%)

Query  276  LSCTVKDSVDEKEYGDLFDYLCAAGVCGGINSNSTSGDYGAYSVCSAKQKLSFVMNQYYK  335
            L C  KDSVD+++  DLFDY C    C GI +N T+G YG YS C+ KQ LS+  N YY+
Sbjct  1    LWCVAKDSVDDEDLQDLFDYACGQADCSGIQANGTTGKYGCYSPCTVKQHLSYAFNSYYQ  60

Query  336  KNNKAATACDFDGKA  350
            K  KA++ACDF G A
Sbjct  61   KQGKASSACDFSGSA  75



Lambda      K        H        a         alpha
   0.313    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00011113

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase. This...  458     8e-161
CDD:400371 pfam07983, X8, X8 domain. The X8 domain domain contain...  115     1e-31 


>CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase.  This is a 
family of glycosylphosphatidylinositol-anchored beta(1-3)glucanosyltransferases. 
The active site residues in the Aspergillus 
fumigatus example are the two glutamate residues at 160 
and 261.
Length=315

 Score = 458 bits (1181),  Expect = 8e-161, Method: Composition-based stats.
 Identities = 178/305 (58%), Positives = 216/305 (71%), Gaps = 9/305 (3%)

Query  43   GNKFFYSNNGTEFFIRGVAYQQEYQANGTSTENSDYTDPLANVDNCKRDIPYLKQLRTNV  102
            GNKFF S NG +F+I+GV YQ      G S+ENS   DPLA+ D CKRDIPY K+L  N 
Sbjct  16   GNKFFDSKNGEQFYIKGVDYQP-----GGSSENSTLVDPLADADVCKRDIPYFKELGINT  70

Query  103  IRTYAVDPTKDHDECMKLLDDAGIYLITDLSAPSESINRADPA--WNTDLYKRYTSVIDA  160
            IR YAVDP+ +HDECMK L DAGIY+I DL+ P ESINRADPA  +N D  +RY +VIDA
Sbjct  71   IRVYAVDPSLNHDECMKALSDAGIYVILDLNTPKESINRADPAGSYNVDYLERYFAVIDA  130

Query  161  FAKYSNVIGFFAGNEVANDNNNTNSIAYVKAAVRDMKSYIKSKDYRSSLLVGYATDDDAH  220
            F  Y+NV+GFFAGNEV ND +NT++  YVKAA+RDMK YI    YR+ + VGY+  DDA 
Sbjct  131  FKNYTNVLGFFAGNEVTNDASNTDASPYVKAAIRDMKQYISKHKYRT-IPVGYSAADDAD  189

Query  221  IRADLADYLVCGDKESSIDMFGYNIYEWCGDSSFEKSGYKDRTEEFSKYPVPAFFSEYGC  280
             R  LADY  CGD +   D FG N+YEWCG SSF+ SGY DRT+EF  Y +P FFSEYGC
Sbjct  190  TRVQLADYFACGDDDERADFFGINMYEWCGYSSFKTSGYDDRTKEFENYSIPVFFSEYGC  249

Query  281  IDPKPRKFTDVAALYGPQMNDVWSGGIVYMYFQEANDYGLVSVSGDNVK-TKEDFSYLSV  339
                PR FT+V+ALY   M  V+SGG+VY Y +EAN+YGLVS+ GD+V  T  DF+ L  
Sbjct  250  NKVTPRPFTEVSALYSSDMTSVFSGGLVYEYSEEANNYGLVSIDGDDVVTTLADFNNLKS  309

Query  340  QMQKV  344
            +  K+
Sbjct  310  EYAKI  314


>CDD:400371 pfam07983, X8, X8 domain.  The X8 domain domain contains at least 
6 conserved cysteine residues that presumably form three 
disulphide bridges. The domain is found in an Olive pollen 
allergen as well as at the C-terminus of several families of 
glycosyl hydrolases. This domain may be involved in carbohydrate 
binding. This domain is characteristic of GPI-anchored 
domains.
Length=76

 Score = 115 bits (289),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 40/75 (53%), Positives = 50/75 (67%), Gaps = 0/75 (0%)

Query  393  LSCTVKDSVDEKEYGDLFDYLCAAGVCGGINSNSTSGDYGAYSVCSAKQKLSFVMNQYYK  452
            L C  KDSVD+++  DLFDY C    C GI +N T+G YG YS C+ KQ LS+  N YY+
Sbjct  1    LWCVAKDSVDDEDLQDLFDYACGQADCSGIQANGTTGKYGCYSPCTVKQHLSYAFNSYYQ  60

Query  453  KNNKAATACDFDGKA  467
            K  KA++ACDF G A
Sbjct  61   KQGKASSACDFSGSA  75



Lambda      K        H        a         alpha
   0.314    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00017526

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase. This...  337     9e-115
CDD:400371 pfam07983, X8, X8 domain. The X8 domain domain contain...  114     7e-32 


>CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase.  This is a 
family of glycosylphosphatidylinositol-anchored beta(1-3)glucanosyltransferases. 
The active site residues in the Aspergillus 
fumigatus example are the two glutamate residues at 160 
and 261.
Length=315

 Score = 337 bits (865),  Expect = 9e-115, Method: Composition-based stats.
 Identities = 133/230 (58%), Positives = 163/230 (71%), Gaps = 4/230 (2%)

Query  1    MKLLDDAGIYLITDLSAPSESINRADPA--WNTDLYKRYTSVIDAFAKYSNVIGFFAGNE  58
            MK L DAGIY+I DL+ P ESINRADPA  +N D  +RY +VIDAF  Y+NV+GFFAGNE
Sbjct  86   MKALSDAGIYVILDLNTPKESINRADPAGSYNVDYLERYFAVIDAFKNYTNVLGFFAGNE  145

Query  59   VANDNNNTNSIAYVKAAVRDMKSYIKSKDYRSSLLVGYATDDDAHIRADLADYLVCGDKE  118
            V ND +NT++  YVKAA+RDMK YI    YR+ + VGY+  DDA  R  LADY  CGD +
Sbjct  146  VTNDASNTDASPYVKAAIRDMKQYISKHKYRT-IPVGYSAADDADTRVQLADYFACGDDD  204

Query  119  SSIDMFGYNIYEWCGDSSFEKSGYKDRTEEFSKYPVPAFFSEYGCIDPKPRKFTDVAALY  178
               D FG N+YEWCG SSF+ SGY DRT+EF  Y +P FFSEYGC    PR FT+V+ALY
Sbjct  205  ERADFFGINMYEWCGYSSFKTSGYDDRTKEFENYSIPVFFSEYGCNKVTPRPFTEVSALY  264

Query  179  GPQMNDVWSGGIVYMYFQEANDYGLVSVSGDNVK-TKEDFSYLSVQMQKV  227
               M  V+SGG+VY Y +EAN+YGLVS+ GD+V  T  DF+ L  +  K+
Sbjct  265  SSDMTSVFSGGLVYEYSEEANNYGLVSIDGDDVVTTLADFNNLKSEYAKI  314


>CDD:400371 pfam07983, X8, X8 domain.  The X8 domain domain contains at least 
6 conserved cysteine residues that presumably form three 
disulphide bridges. The domain is found in an Olive pollen 
allergen as well as at the C-terminus of several families of 
glycosyl hydrolases. This domain may be involved in carbohydrate 
binding. This domain is characteristic of GPI-anchored 
domains.
Length=76

 Score = 114 bits (287),  Expect = 7e-32, Method: Composition-based stats.
 Identities = 40/75 (53%), Positives = 50/75 (67%), Gaps = 0/75 (0%)

Query  276  LSCTVKDSVDEKEYGDLFDYLCAAGVCGGINSNSTSGDYGAYSVCSAKQKLSFVMNQYYK  335
            L C  KDSVD+++  DLFDY C    C GI +N T+G YG YS C+ KQ LS+  N YY+
Sbjct  1    LWCVAKDSVDDEDLQDLFDYACGQADCSGIQANGTTGKYGCYSPCTVKQHLSYAFNSYYQ  60

Query  336  KNNKAATACDFDGKA  350
            K  KA++ACDF G A
Sbjct  61   KQGKASSACDFSGSA  75



Lambda      K        H        a         alpha
   0.313    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00011115

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            115     5e-29


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 115 bits (289),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 79/367 (22%), Positives = 133/367 (36%), Gaps = 38/367 (10%)

Query  37   VSWMAFVVTFSSTSLLPATPE-IAAEFDTTPEILNIINAGVLLAMGFSSLIWGPLTALLG  95
            +   AF+     + L PA P  +A +   +P  + ++     L    +  + G L+   G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  96   RRVAYNIAIAALCGCSVGTALAGGSSVFAVFRVLGGLTGTSFMVQGQTILADIFEAKVRG  155
            RR    I +       +    A    +  V RVL GL   +       ++AD F  + RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  156  TAVGFFMAGTVTGPAIGPCIGGLVVTFAHWRVIFWVQVGMAGLGLVLSLFFVPEVKKREA  215
             A+G   AG   G A+GP +GGL+ +   WR  F +   ++ L  VL L   P  + +  
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRP  180

Query  216  EGEGEGVPRRSSLREVLAMFNPVRIFRQWLYPNVFLCRLTRQDVTCGLLAIFQYGLLTSA  275
            +   E         + L     + +                      LL  F +  L + 
Sbjct  181  KPAEEARLSLIVAWKALLRDPVLWLL------------------LALLLFGFAFFGLLTY  222

Query  276  REIFNPRFNLTSALVSGLFYLVPGAGFLLGSIIGGRLSDRTVKRYIARRGGLRLPQDRLN  335
              ++     L SAL++GL   + G    +G ++ GRLSDR  +R                
Sbjct  223  LPLYQEVLGL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLA----------  271

Query  336  SGLAMLCGVLPVAVLVYGWTLEKRAGGMAVPIIAAFWAGVGLMGSFNGLNTYAAEAIPER  395
              L ++   L + +L    +           ++A    G G    F  LN   ++  P+ 
Sbjct  272  -LLLLILAALGLLLLSLTLS-------SLWLLLALLLLGFGFGLVFPALNALVSDLAPKE  323

Query  396  RSEVISG  402
                 SG
Sbjct  324  ERGTASG  330



Lambda      K        H        a         alpha
   0.327    0.142    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00011114

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            63.2    5e-12


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 63.2 bits (154),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 81/232 (35%), Gaps = 32/232 (14%)

Query  1    MAGTVTGPAIGPCIGGLVVTFAHWRVIFWVQVGMAGLGLVLSLFFVPEVKKREAEGEGEG  60
             AG   G A+GP +GGL+ +   WR  F +   ++ L  VL L   P  + +  +   E 
Sbjct  127  SAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEA  186

Query  61   VPRRSSLREVLAMFNPVRIFRQWLYPNVFLCDVTCGLLAIFQYGLLTSAREIFNPRFNLT  120
                    + L     + +                 LL  F +  L +   ++     L 
Sbjct  187  RLSLIVAWKALLRDPVLWLL-------------LALLLFGFAFFGLLTYLPLYQEVLGL-  232

Query  121  SALVSGLFYLVPGAGFLLGSIIGGRLSDRTVKRYIARRGGLRLPQDRLNSGLAMLCGVLP  180
            SAL++GL   + G    +G ++ GRLSDR  +R                  L ++   L 
Sbjct  233  SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLA-----------LLLLILAALG  281

Query  181  VAVLVYGWTLEKRAGGMAVPIIAAFWAGVGLMGSFNGLNTYAAGNPRTTVRG  232
            + +L    +           ++A    G G    F  LN   +       RG
Sbjct  282  LLLLSLTLS-------SLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERG  326



Lambda      K        H        a         alpha
   0.326    0.145    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00017528

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.145    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00017527

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00011118

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            115     3e-29


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 115 bits (290),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 79/362 (22%), Positives = 133/362 (37%), Gaps = 33/362 (9%)

Query  37   VSWMAFVVTFSSTSLLPATPE-IAAEFDTTPEILNIINAGVLLAMGFSSLIWGPLTALLG  95
            +   AF+     + L PA P  +A +   +P  + ++     L    +  + G L+   G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  96   RRVAYNIAIAALCGCSVGTALAGGSSVFAVFRVLGGLTGTSFMVQGQTILADIFEAKVRG  155
            RR    I +       +    A    +  V RVL GL   +       ++AD F  + RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  156  TAVGFFMAGTVTGPAIGPCIGGLVVTFAHWRVIFWVQVGMAGLGLVLSLFFVPEVKKREA  215
             A+G   AG   G A+GP +GGL+ +   WR  F +   ++ L  VL L   P  + +  
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRP  180

Query  216  EGEGEGVPRRSSLREVLAMFNPVRIFRQWLYPNVFLCDVTCGLLAIFQYGLLTSAREIFN  275
            +   E         + L     + +                 LL  F +  L +   ++ 
Sbjct  181  KPAEEARLSLIVAWKALLRDPVLWLL-------------LALLLFGFAFFGLLTYLPLYQ  227

Query  276  PRFNLTSALVSGLFYLVPGAGFLLGSIIGGRLSDRTVKRYIARRGGLRLPQDRLNSGLAM  335
                L SAL++GL   + G    +G ++ GRLSDR  +R                  L +
Sbjct  228  EVLGL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLA-----------LLLL  275

Query  336  LCGVLPVAVLVYGWTLEKRAGGMAVPIIAAFWAGVGLMGSFNGLNTYAAEAIPERRSEVI  395
            +   L + +L    +           ++A    G G    F  LN   ++  P+      
Sbjct  276  ILAALGLLLLSLTLS-------SLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTA  328

Query  396  SG  397
            SG
Sbjct  329  SG  330



Lambda      K        H        a         alpha
   0.327    0.142    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00011116

Length=272


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00011117

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            117     4e-30


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 117 bits (296),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 78/358 (22%), Positives = 130/358 (36%), Gaps = 33/358 (9%)

Query  37   VSWMAFVVTFSSTSLLPATPE-IAAEFDTTPEILNIINAGVLLAMGFSSLIWGPLTALLG  95
            +   AF+     + L PA P  +A +   +P  + ++     L    +  + G L+   G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  96   RRVAYNIAIAALCGCSVGTALAGGSSVFAVFRVLGGLTGTSFMVQGQTILADIFEAKVRG  155
            RR    I +       +    A    +  V RVL GL   +       ++AD F  + RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  156  TAVGFFMAGTVTGPAIGPCIGGLVVTFAHWRVIFWVQVGMAGLGLVLSLFFVPEVKKREA  215
             A+G   AG   G A+GP +GGL+ +   WR  F +   ++ L  VL L   P  + +  
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRP  180

Query  216  EGEGEGVPRRSSLREVLAMFNPVRIFRQWLYPNVFLCDVTCGLLAIFQYGLLTSAREIFN  275
            +   E         + L     + +                 LL  F +  L +   ++ 
Sbjct  181  KPAEEARLSLIVAWKALLRDPVLWLL-------------LALLLFGFAFFGLLTYLPLYQ  227

Query  276  PRFNLTSALVSGLFYLVPGAGFLLGSIIGGRLSDRTVKRYIARRGGLRLPQDRLNSGLAM  335
                L SAL++GL   + G    +G ++ GRLSDR  +R                  L +
Sbjct  228  EVLGL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLA-----------LLLL  275

Query  336  LCGVLPVAVLVYGWTLEKRAGGMAVPIIAAFWAGVGLMGSFNGLNTYAAGNPRTTVRG  393
            +   L + +L    +           ++A    G G    F  LN   +       RG
Sbjct  276  ILAALGLLLLSLTLS-------SLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERG  326



Lambda      K        H        a         alpha
   0.326    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00017529

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00017530

Length=182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            64.0    5e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 64.0 bits (156),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 34/137 (25%), Positives = 55/137 (40%), Gaps = 1/137 (1%)

Query  37   VSWMAFVVTFSSTSLLPATPE-IAAEFDTTPEILNIINAGVLLAMGFSSLIWGPLTALLG  95
            +   AF+     + L PA P  +A +   +P  + ++     L    +  + G L+   G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  96   RRVAYNIAIAALCGCSVGTALAGGSSVFAVFRVLGGLTGTSFMVQGQTILADIFEAKVRG  155
            RR    I +       +    A    +  V RVL GL   +       ++AD F  + RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  156  TAVGFFMAGTVTGPAIG  172
             A+G   AG   G A+G
Sbjct  121  RALGLVSAGFGLGAALG  137



Lambda      K        H        a         alpha
   0.324    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00011119

Length=182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            64.0    5e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 64.0 bits (156),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 34/137 (25%), Positives = 55/137 (40%), Gaps = 1/137 (1%)

Query  37   VSWMAFVVTFSSTSLLPATPE-IAAEFDTTPEILNIINAGVLLAMGFSSLIWGPLTALLG  95
            +   AF+     + L PA P  +A +   +P  + ++     L    +  + G L+   G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  96   RRVAYNIAIAALCGCSVGTALAGGSSVFAVFRVLGGLTGTSFMVQGQTILADIFEAKVRG  155
            RR    I +       +    A    +  V RVL GL   +       ++AD F  + RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  156  TAVGFFMAGTVTGPAIG  172
             A+G   AG   G A+G
Sbjct  121  RALGLVSAGFGLGAALG  137



Lambda      K        H        a         alpha
   0.324    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00011120

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00011121

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            114     5e-29


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 114 bits (288),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 79/362 (22%), Positives = 133/362 (37%), Gaps = 33/362 (9%)

Query  27   VSWMAFVVTFSSTSLLPATPE-IAAEFDTTPEILNIINAGVLLAMGFSSLIWGPLTALLG  85
            +   AF+     + L PA P  +A +   +P  + ++     L    +  + G L+   G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  86   RRVAYNIAIAALCGCSVGTALAGGSSVFAVFRVLGGLTGTSFMVQGQTILADIFEAKVRG  145
            RR    I +       +    A    +  V RVL GL   +       ++AD F  + RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  146  TAVGFFMAGTVTGPAIGPCIGGLVVTFAHWRVIFWVQVGMAGLGLVLSLFFVPEVKKREA  205
             A+G   AG   G A+GP +GGL+ +   WR  F +   ++ L  VL L   P  + +  
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRP  180

Query  206  EGEGEGVPRRSSLREVLAMFNPVRIFRQWLYPNVFLCDVTCGLLAIFQYGLLTSAREIFN  265
            +   E         + L     + +                 LL  F +  L +   ++ 
Sbjct  181  KPAEEARLSLIVAWKALLRDPVLWLL-------------LALLLFGFAFFGLLTYLPLYQ  227

Query  266  PRFNLTSALVSGLFYLVPGAGFLLGSIIGGRLSDRTVKRYIARRGGLRLPQDRLNSGLAM  325
                L SAL++GL   + G    +G ++ GRLSDR  +R                  L +
Sbjct  228  EVLGL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLA-----------LLLL  275

Query  326  LCGVLPVAVLVYGWTLEKRAGGMAVPIIAAFWAGVGLMGSFNGLNTYAAEAIPERRSEVI  385
            +   L + +L    +           ++A    G G    F  LN   ++  P+      
Sbjct  276  ILAALGLLLLSLTLS-------SLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTA  328

Query  386  SG  387
            SG
Sbjct  329  SG  330



Lambda      K        H        a         alpha
   0.327    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00011122

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            113     8e-29


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 113 bits (285),  Expect = 8e-29, Method: Composition-based stats.
 Identities = 79/367 (22%), Positives = 133/367 (36%), Gaps = 38/367 (10%)

Query  28   VSWMAFVVTFSSTSLLPATPE-IAAEFDTTPEILNIINAGVLLAMGFSSLIWGPLTALLG  86
            +   AF+     + L PA P  +A +   +P  + ++     L    +  + G L+   G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  87   RRVAYNIAIAALCGCSVGTALAGGSSVFAVFRVLGGLTGTSFMVQGQTILADIFEAKVRG  146
            RR    I +       +    A    +  V RVL GL   +       ++AD F  + RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  147  TAVGFFMAGTVTGPAIGPCIGGLVVTFAHWRVIFWVQVGMAGLGLVLSLFFVPEVKKREA  206
             A+G   AG   G A+GP +GGL+ +   WR  F +   ++ L  VL L   P  + +  
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRP  180

Query  207  EGEGEGVPRRSSLREVLAMFNPVRIFRQWLYPNVFLCRLTRQDVTCGLLAIFQYGLLTSA  266
            +   E         + L     + +                      LL  F +  L + 
Sbjct  181  KPAEEARLSLIVAWKALLRDPVLWLL------------------LALLLFGFAFFGLLTY  222

Query  267  REIFNPRFNLTSALVSGLFYLVPGAGFLLGSIIGGRLSDRTVKRYIARRGGLRLPQDRLN  326
              ++     L SAL++GL   + G    +G ++ GRLSDR  +R                
Sbjct  223  LPLYQEVLGL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLA----------  271

Query  327  SGLAMLCGVLPVAVLVYGWTLEKRAGGMAVPIIAAFWAGVGLMGSFNGLNTYAAEAIPER  386
              L ++   L + +L    +           ++A    G G    F  LN   ++  P+ 
Sbjct  272  -LLLLILAALGLLLLSLTLS-------SLWLLLALLLLGFGFGLVFPALNALVSDLAPKE  323

Query  387  RSEVISG  393
                 SG
Sbjct  324  ERGTASG  330



Lambda      K        H        a         alpha
   0.327    0.142    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00017531

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            108     9e-27


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 108 bits (271),  Expect = 9e-27, Method: Composition-based stats.
 Identities = 79/359 (22%), Positives = 132/359 (37%), Gaps = 33/359 (9%)

Query  1    MAFVVTFSSTSLLPATPE-IAAEFDTTPEILNIINAGVLLAMGFSSLIWGPLTALLGRRV  59
             AF+     + L PA P  +A +   +P  + ++     L    +  + G L+   GRR 
Sbjct  4    AAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRR  63

Query  60   AYNIAIAALCGCSVGTALAGGSSVFAVFRVLGGLTGTSFMVQGQTILADIFEAKVRGTAV  119
               I +       +    A    +  V RVL GL   +       ++AD F  + RG A+
Sbjct  64   VLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRAL  123

Query  120  GFFMAGTVTGPAIGPCIGGLVVTFAHWRVIFWVQVGMAGLGLVLSLFFVPEVKKREAEGE  179
            G   AG   G A+GP +GGL+ +   WR  F +   ++ L  VL L   P  + +  +  
Sbjct  124  GLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPA  183

Query  180  GEGVPRRSSLREVLAMFNPVRIFRQWLYPNVFLCDVTCGLLAIFQYGLLTSAREIFNPRF  239
             E         + L     + +                 LL  F +  L +   ++    
Sbjct  184  EEARLSLIVAWKALLRDPVLWLL-------------LALLLFGFAFFGLLTYLPLYQEVL  230

Query  240  NLTSALVSGLFYLVPGAGFLLGSIIGGRLSDRTVKRYIARRGGLRLPQDRLNSGLAMLCG  299
             L SAL++GL   + G    +G ++ GRLSDR  +R                  L ++  
Sbjct  231  GL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLA-----------LLLLILA  278

Query  300  VLPVAVLVYGWTLEKRAGGMAVPIIAAFWAGVGLMGSFNGLNTYAAEAIPERRSEVISG  358
             L + +L    +           ++A    G G    F  LN   ++  P+      SG
Sbjct  279  ALGLLLLSLTLS-------SLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASG  330



Lambda      K        H        a         alpha
   0.327    0.143    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00011123

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            97.5    2e-23


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 97.5 bits (243),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 70/318 (22%), Positives = 115/318 (36%), Gaps = 32/318 (10%)

Query  1    MGFSSLIWGPLTALLGRRVAYNIAIAALCGCSVGTALAGGSSVFAVFRVLGGLTGTSFMV  60
               +  + G L+   GRR    I +       +    A    +  V RVL GL   +   
Sbjct  45   YALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFP  104

Query  61   QGQTILADIFEAKVRGTAVGFFMAGTVTGPAIGPCIGGLVVTFAHWRVIFWVQVGMAGLG  120
                ++AD F  + RG A+G   AG   G A+GP +GGL+ +   WR  F +   ++ L 
Sbjct  105  AALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLA  164

Query  121  LVLSLFFVPEVKKREAEGEGEGVPRRSSLREVLAMFNPVRIFRQWLYPNVFLCDVTCGLL  180
             VL L   P  + +  +   E         + L     + +                 LL
Sbjct  165  AVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLL-------------LALLL  211

Query  181  AIFQYGLLTSAREIFNPRFNLTSALVSGLFYLVPGAGFLLGSIIGGRLSDRTVKRYIARR  240
              F +  L +   ++     L SAL++GL   + G    +G ++ GRLSDR  +R     
Sbjct  212  FGFAFFGLLTYLPLYQEVLGL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLL  270

Query  241  GGLRLPQDRLNSGLAMLCGVLPVAVLVYGWTLEKRAGGMAVPIIAAFWAGVGLMGSFNGL  300
                         L ++   L + +L    +           ++A    G G    F  L
Sbjct  271  A-----------LLLLILAALGLLLLSLTLS-------SLWLLLALLLLGFGFGLVFPAL  312

Query  301  NTYAAEAIPERRSEVISG  318
            N   ++  P+      SG
Sbjct  313  NALVSDLAPKEERGTASG  330



Lambda      K        H        a         alpha
   0.327    0.143    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00011125

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  92.9    1e-21


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 92.9 bits (231),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 51/200 (26%), Positives = 85/200 (43%), Gaps = 14/200 (7%)

Query  70   VDEYFQVVHPSFPIIGKLVFLRQYRSFYSSP--HVRPGKRWLAVLNLVFAIGARCSRYSQ  127
            +D +F+  HP FPI+ +  FLR Y   +SSP  +  P      +L  + A+GA  S    
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPL-----LLLAILALGALFSESPT  55

Query  128  GDNGGVT---DDETLYFSRAWRLSMSDIALLDHPNLQQVQVEGLTSFYLLSVGQVNRSWR  184
              +         + ++F     + + +       +L  +Q   L   Y L  G     WR
Sbjct  56   ARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWR  115

Query  185  ICGISLRSAVTMGLNLRSESNTIAHVS----KETRYRVWWSLFMLDISLCVMTGRPPSSS  240
              G+++R A ++GL+      + +        E R R++W+ F LD  + ++ GRPP  S
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  241  DEFCTTPPPLPFKEEDFSDD  260
            D     P P    +   SD 
Sbjct  176  DSDIDLPLPCDDDDLWESDS  195



Lambda      K        H        a         alpha
   0.321    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 679815634


Query= TCONS_00017532

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0785    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00011124

Length=763
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  95.6    2e-22
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  57.3    2e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 95.6 bits (238),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 51/200 (26%), Positives = 85/200 (43%), Gaps = 14/200 (7%)

Query  293  VDEYFQVVHPSFPIIGKLVFLRQYRSFYSSP--HVRPGKRWLAVLNLVFAIGARCSRYSQ  350
            +D +F+  HP FPI+ +  FLR Y   +SSP  +  P      +L  + A+GA  S    
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPL-----LLLAILALGALFSESPT  55

Query  351  GDNGGVT---DDETLYFSRAWRLSMSDIALLDHPNLQQVQVEGLTSFYLLSVGQVNRSWR  407
              +         + ++F     + + +       +L  +Q   L   Y L  G     WR
Sbjct  56   ARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWR  115

Query  408  ICGISLRSAVTMGLNLRSESNTIAHVS----KETRYRVWWSLFMLDISLCVMTGRPPSSS  463
              G+++R A ++GL+      + +        E R R++W+ F LD  + ++ GRPP  S
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  464  DEFCTTPPPLPFKEEDFSDD  483
            D     P P    +   SD 
Sbjct  176  DSDIDLPLPCDDDDLWESDS  195


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 57.3 bits (139),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 0/39 (0%)

Query  92   RACENCREQKAKCSGHRPTCQRCQESGIRCSYGDRKREK  130
             AC+NCR++K KC G +P C RC ++G+ C+Y  + ++ 
Sbjct  1    TACDNCRKRKVKCDGKKPACSRCIKNGLECTYSRKSKKS  39



Lambda      K        H        a         alpha
   0.319    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 973496688


Query= TCONS_00011130

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  92.9    1e-21


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 92.9 bits (231),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 51/200 (26%), Positives = 85/200 (43%), Gaps = 14/200 (7%)

Query  70   VDEYFQVVHPSFPIIGKLVFLRQYRSFYSSP--HVRPGKRWLAVLNLVFAIGARCSRYSQ  127
            +D +F+  HP FPI+ +  FLR Y   +SSP  +  P      +L  + A+GA  S    
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPL-----LLLAILALGALFSESPT  55

Query  128  GDNGGVT---DDETLYFSRAWRLSMSDIALLDHPNLQQVQVEGLTSFYLLSVGQVNRSWR  184
              +         + ++F     + + +       +L  +Q   L   Y L  G     WR
Sbjct  56   ARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWR  115

Query  185  ICGISLRSAVTMGLNLRSESNTIAHVS----KETRYRVWWSLFMLDISLCVMTGRPPSSS  240
              G+++R A ++GL+      + +        E R R++W+ F LD  + ++ GRPP  S
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  241  DEFCTTPPPLPFKEEDFSDD  260
            D     P P    +   SD 
Sbjct  176  DSDIDLPLPCDDDDLWESDS  195



Lambda      K        H        a         alpha
   0.321    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 679815634


Query= TCONS_00017533

Length=1836
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463510 pfam12257, IML1, Vacuolar membrane-associated protein ...  471     8e-154
CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, a...  105     1e-27 
CDD:466071 pfam19418, DEPDC5_CTD, DEPDC5 protein C-terminal regio...  75.1    1e-14 


>CDD:463510 pfam12257, IML1, Vacuolar membrane-associated protein Iml1.  
Proteins in this family contain a DEP domain, which is a globular 
domain of about 80 residues. This entry includes vacuolar 
membrane-associated protein Iml1 and DEP domain-containing 
protein 5/DDB_G0279099. In Saccharomyces cerevisiae, Iml1 
is a subunit of both the SEA (Seh1-associated) and Iml1 complexes 
(Iml1-Npr2-Npr3). SEA complex is associates dynamically 
with the vacuole and is involved in autophagy. Iml1 complex 
is required for non-nitrogen-starvation (NNS)-induced autophagy.
Length=278

 Score = 471 bits (1214),  Expect = 8e-154, Method: Composition-based stats.
 Identities = 165/304 (54%), Positives = 200/304 (66%), Gaps = 27/304 (9%)

Query  203  IAFRDQFLVRSDMWRLVMSELADKIIYKGQKIVFMGSIKATVKNIFIRGKKVLSGYFSPH  262
            + F+DQ+L RSDMWRL  SEL    +Y GQKI F+GSI+ATVK I+I GKKV SGY + +
Sbjct  2    LTFKDQYLSRSDMWRL-SSELVGTCVYVGQKISFLGSIRATVKEIYINGKKVFSGYITEN  60

Query  263  TIPVFRSESAKYVLFIQMSREMWDFDSEGTGDILFSRVINGFLPELFKRWANSDAKHLVT  322
            T  +FRSESA+Y +FIQMSREMWDFD +G  ++ F +V+NGFLPELFKRW      HLVT
Sbjct  61   TKIIFRSESARYTIFIQMSREMWDFDEDG--ELYFEKVVNGFLPELFKRWKELGTHHLVT  118

Query  323  IVLFTRVEYDSSALGGPLPLSSESLRCISSPNHAPTRDFYRVVVNDMASGHWTTILDELK  382
            IVLF+RV YD+S +        E  R          +DFYRVVV+  +SG WT+IL  LK
Sbjct  119  IVLFSRVFYDTSEIDDEAGPRDERGR--------LYKDFYRVVVDQESSGDWTSILVTLK  170

Query  383  KDFRTFLRDVSILKMDRPDTPTVDGVKVAPKNKPAIIAGRPSTALRGNILEAIHLASAHL  442
            K+F  F RD+                 +    K   IAGR S A++GNILEAI+LA    
Sbjct  171  KEFANFQRDIL----------------LHHHEKRTRIAGRNSPAIKGNILEAINLALNLF  214

Query  443  AYDHIDRDLVHTGTSIIVITPGSGVFEVSYESLSSTSEALADRGIAIDLVCLSPMPLHSV  502
               +IDRDL  TGTSIIVITPG+GVFEV Y+ L  T+E L D GI IDLVCLS  PLHSV
Sbjct  215  EDHYIDRDLRRTGTSIIVITPGTGVFEVDYDLLRLTTERLLDNGIGIDLVCLSKPPLHSV  274

Query  503  PLFK  506
            PLF+
Sbjct  275  PLFR  278


>CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin 
(DEP).  The DEP domain is responsible for mediating intracellular 
protein targeting and regulation of protein stability 
in the cell. The DEP domain is present in a number of 
signaling molecules, including Regulator of G protein Signaling 
(RGS) proteins, and has been implicated in membrane targeting. 
New findings in yeast, however, demonstrate a major 
role for a DEP domain in mediating the interaction of an RGS 
protein to the C-terminal tail of a GPCR, thus placing RGS 
in close proximity with its substrate G protein alpha subunit.
Length=71

 Score = 105 bits (264),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (3%)

Query  1340  GVRMMDRRWHWRLHYNCFIGFEFTTWLLQNFRDIDSREEAVQFGNELMKHGLFQHVEKRH  1399
             GV++ DRR H + + NCF G E   WL+ N  +I +REEAV+ G  L+  GL  HV  +H
Sbjct  1     GVKLKDRRKHLKTYPNCFTGSEAVDWLMDNL-EIITREEAVELGQLLLDQGLIHHVGDKH  59

Query  1400  N-FRDGNYFYQI  1410
               F+D  YFY+ 
Sbjct  60    GLFKDSYYFYRF  71


>CDD:466071 pfam19418, DEPDC5_CTD, DEPDC5 protein C-terminal region.  This 
entry represents the C-terminal domain (CTD) (residues 1,291-1,603) 
of the DEPDC5 protein. It contains two structurally 
similar lobes and has a pseudo-2-fold rotational symmetry. 
Each half consists of a five-stranded beta-sheet, with an alpha-helix 
covering one side. The CTD is located in the core 
of DEPDC5 and contacts all the other domains of DEPDC5 except 
the NTD, making it the central organizer of this multi-domain 
protein.
Length=303

 Score = 75.1 bits (184),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 56/211 (27%), Positives = 86/211 (41%), Gaps = 38/211 (18%)

Query  1453  SRSESVETPATPSKSK----NKATIMLSKMMKYDVDPRKRSNRPEVIDLHYDRLHNPDNC  1508
             SR  S  + +   +S+      AT+   + +  DVD   R++R E    +Y    + +  
Sbjct  41    SRRHSSFSRSFGGRSQAAAYLAATVPEQRTVTLDVDVNNRTDRLEWCSCYYHGNFSLNAA  100

Query  1509  FHIELSWMNTTPKLIEDAVLSWAATAEKFGLKLVQVPIAEGCAISRTQPFRKPYRVSLAV  1568
             F I+L WM  T  ++ + V  W   A   G  L  VP+ EG       PF  P    L  
Sbjct  101   FEIKLHWMAVTAAVLFEMVQGWHRKATSCGFLL--VPVLEG-------PFALPS--YLYG  149

Query  1569  PPPPGPVPTVFNTATFSQLGSS------------DR-HYYHKALLRKFDFVLDFEARSAF  1615
              P    +    N +   + GS             DR H + +A+L +F FV D  + SAF
Sbjct  150   DPLRAQLFIPLNISCLLKEGSEHLFDSFEPETYWDRMHLFQEAILHRFGFVQDKYSASAF  209

Query  1616  PADVEVSYSWGTPDYQYPQYIHRSGSLLVQI  1646
                         P    PQYIH +G++ +Q+
Sbjct  210   ----------NFPAENKPQYIHVTGTVFLQL  230



Lambda      K        H        a         alpha
   0.317    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2321594464


Query= TCONS_00011126

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.134    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00011127

Length=763
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  95.6    2e-22
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  57.3    2e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 95.6 bits (238),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 51/200 (26%), Positives = 85/200 (43%), Gaps = 14/200 (7%)

Query  293  VDEYFQVVHPSFPIIGKLVFLRQYRSFYSSP--HVRPGKRWLAVLNLVFAIGARCSRYSQ  350
            +D +F+  HP FPI+ +  FLR Y   +SSP  +  P      +L  + A+GA  S    
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPL-----LLLAILALGALFSESPT  55

Query  351  GDNGGVT---DDETLYFSRAWRLSMSDIALLDHPNLQQVQVEGLTSFYLLSVGQVNRSWR  407
              +         + ++F     + + +       +L  +Q   L   Y L  G     WR
Sbjct  56   ARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWR  115

Query  408  ICGISLRSAVTMGLNLRSESNTIAHVS----KETRYRVWWSLFMLDISLCVMTGRPPSSS  463
              G+++R A ++GL+      + +        E R R++W+ F LD  + ++ GRPP  S
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  464  DEFCTTPPPLPFKEEDFSDD  483
            D     P P    +   SD 
Sbjct  176  DSDIDLPLPCDDDDLWESDS  195


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 57.3 bits (139),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 0/39 (0%)

Query  92   RACENCREQKAKCSGHRPTCQRCQESGIRCSYGDRKREK  130
             AC+NCR++K KC G +P C RC ++G+ C+Y  + ++ 
Sbjct  1    TACDNCRKRKVKCDGKKPACSRCIKNGLECTYSRKSKKS  39



Lambda      K        H        a         alpha
   0.319    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 973496688


Query= TCONS_00017534

Length=1836
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463510 pfam12257, IML1, Vacuolar membrane-associated protein ...  471     8e-154
CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, a...  105     1e-27 
CDD:466071 pfam19418, DEPDC5_CTD, DEPDC5 protein C-terminal regio...  75.1    1e-14 


>CDD:463510 pfam12257, IML1, Vacuolar membrane-associated protein Iml1.  
Proteins in this family contain a DEP domain, which is a globular 
domain of about 80 residues. This entry includes vacuolar 
membrane-associated protein Iml1 and DEP domain-containing 
protein 5/DDB_G0279099. In Saccharomyces cerevisiae, Iml1 
is a subunit of both the SEA (Seh1-associated) and Iml1 complexes 
(Iml1-Npr2-Npr3). SEA complex is associates dynamically 
with the vacuole and is involved in autophagy. Iml1 complex 
is required for non-nitrogen-starvation (NNS)-induced autophagy.
Length=278

 Score = 471 bits (1214),  Expect = 8e-154, Method: Composition-based stats.
 Identities = 165/304 (54%), Positives = 200/304 (66%), Gaps = 27/304 (9%)

Query  203  IAFRDQFLVRSDMWRLVMSELADKIIYKGQKIVFMGSIKATVKNIFIRGKKVLSGYFSPH  262
            + F+DQ+L RSDMWRL  SEL    +Y GQKI F+GSI+ATVK I+I GKKV SGY + +
Sbjct  2    LTFKDQYLSRSDMWRL-SSELVGTCVYVGQKISFLGSIRATVKEIYINGKKVFSGYITEN  60

Query  263  TIPVFRSESAKYVLFIQMSREMWDFDSEGTGDILFSRVINGFLPELFKRWANSDAKHLVT  322
            T  +FRSESA+Y +FIQMSREMWDFD +G  ++ F +V+NGFLPELFKRW      HLVT
Sbjct  61   TKIIFRSESARYTIFIQMSREMWDFDEDG--ELYFEKVVNGFLPELFKRWKELGTHHLVT  118

Query  323  IVLFTRVEYDSSALGGPLPLSSESLRCISSPNHAPTRDFYRVVVNDMASGHWTTILDELK  382
            IVLF+RV YD+S +        E  R          +DFYRVVV+  +SG WT+IL  LK
Sbjct  119  IVLFSRVFYDTSEIDDEAGPRDERGR--------LYKDFYRVVVDQESSGDWTSILVTLK  170

Query  383  KDFRTFLRDVSILKMDRPDTPTVDGVKVAPKNKPAIIAGRPSTALRGNILEAIHLASAHL  442
            K+F  F RD+                 +    K   IAGR S A++GNILEAI+LA    
Sbjct  171  KEFANFQRDIL----------------LHHHEKRTRIAGRNSPAIKGNILEAINLALNLF  214

Query  443  AYDHIDRDLVHTGTSIIVITPGSGVFEVSYESLSSTSEALADRGIAIDLVCLSPMPLHSV  502
               +IDRDL  TGTSIIVITPG+GVFEV Y+ L  T+E L D GI IDLVCLS  PLHSV
Sbjct  215  EDHYIDRDLRRTGTSIIVITPGTGVFEVDYDLLRLTTERLLDNGIGIDLVCLSKPPLHSV  274

Query  503  PLFK  506
            PLF+
Sbjct  275  PLFR  278


>CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin 
(DEP).  The DEP domain is responsible for mediating intracellular 
protein targeting and regulation of protein stability 
in the cell. The DEP domain is present in a number of 
signaling molecules, including Regulator of G protein Signaling 
(RGS) proteins, and has been implicated in membrane targeting. 
New findings in yeast, however, demonstrate a major 
role for a DEP domain in mediating the interaction of an RGS 
protein to the C-terminal tail of a GPCR, thus placing RGS 
in close proximity with its substrate G protein alpha subunit.
Length=71

 Score = 105 bits (264),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (3%)

Query  1340  GVRMMDRRWHWRLHYNCFIGFEFTTWLLQNFRDIDSREEAVQFGNELMKHGLFQHVEKRH  1399
             GV++ DRR H + + NCF G E   WL+ N  +I +REEAV+ G  L+  GL  HV  +H
Sbjct  1     GVKLKDRRKHLKTYPNCFTGSEAVDWLMDNL-EIITREEAVELGQLLLDQGLIHHVGDKH  59

Query  1400  N-FRDGNYFYQI  1410
               F+D  YFY+ 
Sbjct  60    GLFKDSYYFYRF  71


>CDD:466071 pfam19418, DEPDC5_CTD, DEPDC5 protein C-terminal region.  This 
entry represents the C-terminal domain (CTD) (residues 1,291-1,603) 
of the DEPDC5 protein. It contains two structurally 
similar lobes and has a pseudo-2-fold rotational symmetry. 
Each half consists of a five-stranded beta-sheet, with an alpha-helix 
covering one side. The CTD is located in the core 
of DEPDC5 and contacts all the other domains of DEPDC5 except 
the NTD, making it the central organizer of this multi-domain 
protein.
Length=303

 Score = 75.1 bits (184),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 56/211 (27%), Positives = 86/211 (41%), Gaps = 38/211 (18%)

Query  1453  SRSESVETPATPSKSK----NKATIMLSKMMKYDVDPRKRSNRPEVIDLHYDRLHNPDNC  1508
             SR  S  + +   +S+      AT+   + +  DVD   R++R E    +Y    + +  
Sbjct  41    SRRHSSFSRSFGGRSQAAAYLAATVPEQRTVTLDVDVNNRTDRLEWCSCYYHGNFSLNAA  100

Query  1509  FHIELSWMNTTPKLIEDAVLSWAATAEKFGLKLVQVPIAEGCAISRTQPFRKPYRVSLAV  1568
             F I+L WM  T  ++ + V  W   A   G  L  VP+ EG       PF  P    L  
Sbjct  101   FEIKLHWMAVTAAVLFEMVQGWHRKATSCGFLL--VPVLEG-------PFALPS--YLYG  149

Query  1569  PPPPGPVPTVFNTATFSQLGSS------------DR-HYYHKALLRKFDFVLDFEARSAF  1615
              P    +    N +   + GS             DR H + +A+L +F FV D  + SAF
Sbjct  150   DPLRAQLFIPLNISCLLKEGSEHLFDSFEPETYWDRMHLFQEAILHRFGFVQDKYSASAF  209

Query  1616  PADVEVSYSWGTPDYQYPQYIHRSGSLLVQI  1646
                         P    PQYIH +G++ +Q+
Sbjct  210   ----------NFPAENKPQYIHVTGTVFLQL  230



Lambda      K        H        a         alpha
   0.317    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2321594464


Query= TCONS_00011128

Length=763
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  95.6    2e-22
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  57.3    2e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 95.6 bits (238),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 51/200 (26%), Positives = 85/200 (43%), Gaps = 14/200 (7%)

Query  293  VDEYFQVVHPSFPIIGKLVFLRQYRSFYSSP--HVRPGKRWLAVLNLVFAIGARCSRYSQ  350
            +D +F+  HP FPI+ +  FLR Y   +SSP  +  P      +L  + A+GA  S    
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPL-----LLLAILALGALFSESPT  55

Query  351  GDNGGVT---DDETLYFSRAWRLSMSDIALLDHPNLQQVQVEGLTSFYLLSVGQVNRSWR  407
              +         + ++F     + + +       +L  +Q   L   Y L  G     WR
Sbjct  56   ARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWR  115

Query  408  ICGISLRSAVTMGLNLRSESNTIAHVS----KETRYRVWWSLFMLDISLCVMTGRPPSSS  463
              G+++R A ++GL+      + +        E R R++W+ F LD  + ++ GRPP  S
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  464  DEFCTTPPPLPFKEEDFSDD  483
            D     P P    +   SD 
Sbjct  176  DSDIDLPLPCDDDDLWESDS  195


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 57.3 bits (139),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 0/39 (0%)

Query  92   RACENCREQKAKCSGHRPTCQRCQESGIRCSYGDRKREK  130
             AC+NCR++K KC G +P C RC ++G+ C+Y  + ++ 
Sbjct  1    TACDNCRKRKVKCDGKKPACSRCIKNGLECTYSRKSKKS  39



Lambda      K        H        a         alpha
   0.319    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 973496688


Query= TCONS_00017535

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  57.3    1e-11


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 57.3 bits (139),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 0/39 (0%)

Query  92   RACENCREQKAKCSGHRPTCQRCQESGIRCSYGDRKREK  130
             AC+NCR++K KC G +P C RC ++G+ C+Y  + ++ 
Sbjct  1    TACDNCRKRKVKCDGKKPACSRCIKNGLECTYSRKSKKS  39



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00011129

Length=1836
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463510 pfam12257, IML1, Vacuolar membrane-associated protein ...  471     8e-154
CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, a...  105     1e-27 
CDD:466071 pfam19418, DEPDC5_CTD, DEPDC5 protein C-terminal regio...  75.1    1e-14 


>CDD:463510 pfam12257, IML1, Vacuolar membrane-associated protein Iml1.  
Proteins in this family contain a DEP domain, which is a globular 
domain of about 80 residues. This entry includes vacuolar 
membrane-associated protein Iml1 and DEP domain-containing 
protein 5/DDB_G0279099. In Saccharomyces cerevisiae, Iml1 
is a subunit of both the SEA (Seh1-associated) and Iml1 complexes 
(Iml1-Npr2-Npr3). SEA complex is associates dynamically 
with the vacuole and is involved in autophagy. Iml1 complex 
is required for non-nitrogen-starvation (NNS)-induced autophagy.
Length=278

 Score = 471 bits (1214),  Expect = 8e-154, Method: Composition-based stats.
 Identities = 165/304 (54%), Positives = 200/304 (66%), Gaps = 27/304 (9%)

Query  203  IAFRDQFLVRSDMWRLVMSELADKIIYKGQKIVFMGSIKATVKNIFIRGKKVLSGYFSPH  262
            + F+DQ+L RSDMWRL  SEL    +Y GQKI F+GSI+ATVK I+I GKKV SGY + +
Sbjct  2    LTFKDQYLSRSDMWRL-SSELVGTCVYVGQKISFLGSIRATVKEIYINGKKVFSGYITEN  60

Query  263  TIPVFRSESAKYVLFIQMSREMWDFDSEGTGDILFSRVINGFLPELFKRWANSDAKHLVT  322
            T  +FRSESA+Y +FIQMSREMWDFD +G  ++ F +V+NGFLPELFKRW      HLVT
Sbjct  61   TKIIFRSESARYTIFIQMSREMWDFDEDG--ELYFEKVVNGFLPELFKRWKELGTHHLVT  118

Query  323  IVLFTRVEYDSSALGGPLPLSSESLRCISSPNHAPTRDFYRVVVNDMASGHWTTILDELK  382
            IVLF+RV YD+S +        E  R          +DFYRVVV+  +SG WT+IL  LK
Sbjct  119  IVLFSRVFYDTSEIDDEAGPRDERGR--------LYKDFYRVVVDQESSGDWTSILVTLK  170

Query  383  KDFRTFLRDVSILKMDRPDTPTVDGVKVAPKNKPAIIAGRPSTALRGNILEAIHLASAHL  442
            K+F  F RD+                 +    K   IAGR S A++GNILEAI+LA    
Sbjct  171  KEFANFQRDIL----------------LHHHEKRTRIAGRNSPAIKGNILEAINLALNLF  214

Query  443  AYDHIDRDLVHTGTSIIVITPGSGVFEVSYESLSSTSEALADRGIAIDLVCLSPMPLHSV  502
               +IDRDL  TGTSIIVITPG+GVFEV Y+ L  T+E L D GI IDLVCLS  PLHSV
Sbjct  215  EDHYIDRDLRRTGTSIIVITPGTGVFEVDYDLLRLTTERLLDNGIGIDLVCLSKPPLHSV  274

Query  503  PLFK  506
            PLF+
Sbjct  275  PLFR  278


>CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin 
(DEP).  The DEP domain is responsible for mediating intracellular 
protein targeting and regulation of protein stability 
in the cell. The DEP domain is present in a number of 
signaling molecules, including Regulator of G protein Signaling 
(RGS) proteins, and has been implicated in membrane targeting. 
New findings in yeast, however, demonstrate a major 
role for a DEP domain in mediating the interaction of an RGS 
protein to the C-terminal tail of a GPCR, thus placing RGS 
in close proximity with its substrate G protein alpha subunit.
Length=71

 Score = 105 bits (264),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (3%)

Query  1340  GVRMMDRRWHWRLHYNCFIGFEFTTWLLQNFRDIDSREEAVQFGNELMKHGLFQHVEKRH  1399
             GV++ DRR H + + NCF G E   WL+ N  +I +REEAV+ G  L+  GL  HV  +H
Sbjct  1     GVKLKDRRKHLKTYPNCFTGSEAVDWLMDNL-EIITREEAVELGQLLLDQGLIHHVGDKH  59

Query  1400  N-FRDGNYFYQI  1410
               F+D  YFY+ 
Sbjct  60    GLFKDSYYFYRF  71


>CDD:466071 pfam19418, DEPDC5_CTD, DEPDC5 protein C-terminal region.  This 
entry represents the C-terminal domain (CTD) (residues 1,291-1,603) 
of the DEPDC5 protein. It contains two structurally 
similar lobes and has a pseudo-2-fold rotational symmetry. 
Each half consists of a five-stranded beta-sheet, with an alpha-helix 
covering one side. The CTD is located in the core 
of DEPDC5 and contacts all the other domains of DEPDC5 except 
the NTD, making it the central organizer of this multi-domain 
protein.
Length=303

 Score = 75.1 bits (184),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 56/211 (27%), Positives = 86/211 (41%), Gaps = 38/211 (18%)

Query  1453  SRSESVETPATPSKSK----NKATIMLSKMMKYDVDPRKRSNRPEVIDLHYDRLHNPDNC  1508
             SR  S  + +   +S+      AT+   + +  DVD   R++R E    +Y    + +  
Sbjct  41    SRRHSSFSRSFGGRSQAAAYLAATVPEQRTVTLDVDVNNRTDRLEWCSCYYHGNFSLNAA  100

Query  1509  FHIELSWMNTTPKLIEDAVLSWAATAEKFGLKLVQVPIAEGCAISRTQPFRKPYRVSLAV  1568
             F I+L WM  T  ++ + V  W   A   G  L  VP+ EG       PF  P    L  
Sbjct  101   FEIKLHWMAVTAAVLFEMVQGWHRKATSCGFLL--VPVLEG-------PFALPS--YLYG  149

Query  1569  PPPPGPVPTVFNTATFSQLGSS------------DR-HYYHKALLRKFDFVLDFEARSAF  1615
              P    +    N +   + GS             DR H + +A+L +F FV D  + SAF
Sbjct  150   DPLRAQLFIPLNISCLLKEGSEHLFDSFEPETYWDRMHLFQEAILHRFGFVQDKYSASAF  209

Query  1616  PADVEVSYSWGTPDYQYPQYIHRSGSLLVQI  1646
                         P    PQYIH +G++ +Q+
Sbjct  210   ----------NFPAENKPQYIHVTGTVFLQL  230



Lambda      K        H        a         alpha
   0.317    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2321594464


Query= TCONS_00011131

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00017536

Length=1836
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463510 pfam12257, IML1, Vacuolar membrane-associated protein ...  471     8e-154
CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, a...  105     1e-27 
CDD:466071 pfam19418, DEPDC5_CTD, DEPDC5 protein C-terminal regio...  75.1    1e-14 


>CDD:463510 pfam12257, IML1, Vacuolar membrane-associated protein Iml1.  
Proteins in this family contain a DEP domain, which is a globular 
domain of about 80 residues. This entry includes vacuolar 
membrane-associated protein Iml1 and DEP domain-containing 
protein 5/DDB_G0279099. In Saccharomyces cerevisiae, Iml1 
is a subunit of both the SEA (Seh1-associated) and Iml1 complexes 
(Iml1-Npr2-Npr3). SEA complex is associates dynamically 
with the vacuole and is involved in autophagy. Iml1 complex 
is required for non-nitrogen-starvation (NNS)-induced autophagy.
Length=278

 Score = 471 bits (1214),  Expect = 8e-154, Method: Composition-based stats.
 Identities = 165/304 (54%), Positives = 200/304 (66%), Gaps = 27/304 (9%)

Query  203  IAFRDQFLVRSDMWRLVMSELADKIIYKGQKIVFMGSIKATVKNIFIRGKKVLSGYFSPH  262
            + F+DQ+L RSDMWRL  SEL    +Y GQKI F+GSI+ATVK I+I GKKV SGY + +
Sbjct  2    LTFKDQYLSRSDMWRL-SSELVGTCVYVGQKISFLGSIRATVKEIYINGKKVFSGYITEN  60

Query  263  TIPVFRSESAKYVLFIQMSREMWDFDSEGTGDILFSRVINGFLPELFKRWANSDAKHLVT  322
            T  +FRSESA+Y +FIQMSREMWDFD +G  ++ F +V+NGFLPELFKRW      HLVT
Sbjct  61   TKIIFRSESARYTIFIQMSREMWDFDEDG--ELYFEKVVNGFLPELFKRWKELGTHHLVT  118

Query  323  IVLFTRVEYDSSALGGPLPLSSESLRCISSPNHAPTRDFYRVVVNDMASGHWTTILDELK  382
            IVLF+RV YD+S +        E  R          +DFYRVVV+  +SG WT+IL  LK
Sbjct  119  IVLFSRVFYDTSEIDDEAGPRDERGR--------LYKDFYRVVVDQESSGDWTSILVTLK  170

Query  383  KDFRTFLRDVSILKMDRPDTPTVDGVKVAPKNKPAIIAGRPSTALRGNILEAIHLASAHL  442
            K+F  F RD+                 +    K   IAGR S A++GNILEAI+LA    
Sbjct  171  KEFANFQRDIL----------------LHHHEKRTRIAGRNSPAIKGNILEAINLALNLF  214

Query  443  AYDHIDRDLVHTGTSIIVITPGSGVFEVSYESLSSTSEALADRGIAIDLVCLSPMPLHSV  502
               +IDRDL  TGTSIIVITPG+GVFEV Y+ L  T+E L D GI IDLVCLS  PLHSV
Sbjct  215  EDHYIDRDLRRTGTSIIVITPGTGVFEVDYDLLRLTTERLLDNGIGIDLVCLSKPPLHSV  274

Query  503  PLFK  506
            PLF+
Sbjct  275  PLFR  278


>CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin 
(DEP).  The DEP domain is responsible for mediating intracellular 
protein targeting and regulation of protein stability 
in the cell. The DEP domain is present in a number of 
signaling molecules, including Regulator of G protein Signaling 
(RGS) proteins, and has been implicated in membrane targeting. 
New findings in yeast, however, demonstrate a major 
role for a DEP domain in mediating the interaction of an RGS 
protein to the C-terminal tail of a GPCR, thus placing RGS 
in close proximity with its substrate G protein alpha subunit.
Length=71

 Score = 105 bits (264),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (3%)

Query  1340  GVRMMDRRWHWRLHYNCFIGFEFTTWLLQNFRDIDSREEAVQFGNELMKHGLFQHVEKRH  1399
             GV++ DRR H + + NCF G E   WL+ N  +I +REEAV+ G  L+  GL  HV  +H
Sbjct  1     GVKLKDRRKHLKTYPNCFTGSEAVDWLMDNL-EIITREEAVELGQLLLDQGLIHHVGDKH  59

Query  1400  N-FRDGNYFYQI  1410
               F+D  YFY+ 
Sbjct  60    GLFKDSYYFYRF  71


>CDD:466071 pfam19418, DEPDC5_CTD, DEPDC5 protein C-terminal region.  This 
entry represents the C-terminal domain (CTD) (residues 1,291-1,603) 
of the DEPDC5 protein. It contains two structurally 
similar lobes and has a pseudo-2-fold rotational symmetry. 
Each half consists of a five-stranded beta-sheet, with an alpha-helix 
covering one side. The CTD is located in the core 
of DEPDC5 and contacts all the other domains of DEPDC5 except 
the NTD, making it the central organizer of this multi-domain 
protein.
Length=303

 Score = 75.1 bits (184),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 56/211 (27%), Positives = 86/211 (41%), Gaps = 38/211 (18%)

Query  1453  SRSESVETPATPSKSK----NKATIMLSKMMKYDVDPRKRSNRPEVIDLHYDRLHNPDNC  1508
             SR  S  + +   +S+      AT+   + +  DVD   R++R E    +Y    + +  
Sbjct  41    SRRHSSFSRSFGGRSQAAAYLAATVPEQRTVTLDVDVNNRTDRLEWCSCYYHGNFSLNAA  100

Query  1509  FHIELSWMNTTPKLIEDAVLSWAATAEKFGLKLVQVPIAEGCAISRTQPFRKPYRVSLAV  1568
             F I+L WM  T  ++ + V  W   A   G  L  VP+ EG       PF  P    L  
Sbjct  101   FEIKLHWMAVTAAVLFEMVQGWHRKATSCGFLL--VPVLEG-------PFALPS--YLYG  149

Query  1569  PPPPGPVPTVFNTATFSQLGSS------------DR-HYYHKALLRKFDFVLDFEARSAF  1615
              P    +    N +   + GS             DR H + +A+L +F FV D  + SAF
Sbjct  150   DPLRAQLFIPLNISCLLKEGSEHLFDSFEPETYWDRMHLFQEAILHRFGFVQDKYSASAF  209

Query  1616  PADVEVSYSWGTPDYQYPQYIHRSGSLLVQI  1646
                         P    PQYIH +G++ +Q+
Sbjct  210   ----------NFPAENKPQYIHVTGTVFLQL  230



Lambda      K        H        a         alpha
   0.317    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2321594464


Query= TCONS_00011132

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  61.7    2e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 61.7 bits (150),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 39/82 (48%), Gaps = 4/82 (5%)

Query  22   WRICGISLRSAVTMGLNLRSESNTIAHVS----KETRYRVWWSLFMLDISLCVMTGRPPS  77
            WR  G+++R A ++GL+      + +        E R R++W+ F LD  + ++ GRPP 
Sbjct  114  WRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPL  173

Query  78   SSDEFCTTPPPLPFKEEDFSDD  99
             SD     P P    +   SD 
Sbjct  174  LSDSDIDLPLPCDDDDLWESDS  195



Lambda      K        H        a         alpha
   0.322    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0777    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00011136

Length=1836
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463510 pfam12257, IML1, Vacuolar membrane-associated protein ...  471     8e-154
CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, a...  105     1e-27 
CDD:466071 pfam19418, DEPDC5_CTD, DEPDC5 protein C-terminal regio...  75.1    1e-14 


>CDD:463510 pfam12257, IML1, Vacuolar membrane-associated protein Iml1.  
Proteins in this family contain a DEP domain, which is a globular 
domain of about 80 residues. This entry includes vacuolar 
membrane-associated protein Iml1 and DEP domain-containing 
protein 5/DDB_G0279099. In Saccharomyces cerevisiae, Iml1 
is a subunit of both the SEA (Seh1-associated) and Iml1 complexes 
(Iml1-Npr2-Npr3). SEA complex is associates dynamically 
with the vacuole and is involved in autophagy. Iml1 complex 
is required for non-nitrogen-starvation (NNS)-induced autophagy.
Length=278

 Score = 471 bits (1214),  Expect = 8e-154, Method: Composition-based stats.
 Identities = 165/304 (54%), Positives = 200/304 (66%), Gaps = 27/304 (9%)

Query  203  IAFRDQFLVRSDMWRLVMSELADKIIYKGQKIVFMGSIKATVKNIFIRGKKVLSGYFSPH  262
            + F+DQ+L RSDMWRL  SEL    +Y GQKI F+GSI+ATVK I+I GKKV SGY + +
Sbjct  2    LTFKDQYLSRSDMWRL-SSELVGTCVYVGQKISFLGSIRATVKEIYINGKKVFSGYITEN  60

Query  263  TIPVFRSESAKYVLFIQMSREMWDFDSEGTGDILFSRVINGFLPELFKRWANSDAKHLVT  322
            T  +FRSESA+Y +FIQMSREMWDFD +G  ++ F +V+NGFLPELFKRW      HLVT
Sbjct  61   TKIIFRSESARYTIFIQMSREMWDFDEDG--ELYFEKVVNGFLPELFKRWKELGTHHLVT  118

Query  323  IVLFTRVEYDSSALGGPLPLSSESLRCISSPNHAPTRDFYRVVVNDMASGHWTTILDELK  382
            IVLF+RV YD+S +        E  R          +DFYRVVV+  +SG WT+IL  LK
Sbjct  119  IVLFSRVFYDTSEIDDEAGPRDERGR--------LYKDFYRVVVDQESSGDWTSILVTLK  170

Query  383  KDFRTFLRDVSILKMDRPDTPTVDGVKVAPKNKPAIIAGRPSTALRGNILEAIHLASAHL  442
            K+F  F RD+                 +    K   IAGR S A++GNILEAI+LA    
Sbjct  171  KEFANFQRDIL----------------LHHHEKRTRIAGRNSPAIKGNILEAINLALNLF  214

Query  443  AYDHIDRDLVHTGTSIIVITPGSGVFEVSYESLSSTSEALADRGIAIDLVCLSPMPLHSV  502
               +IDRDL  TGTSIIVITPG+GVFEV Y+ L  T+E L D GI IDLVCLS  PLHSV
Sbjct  215  EDHYIDRDLRRTGTSIIVITPGTGVFEVDYDLLRLTTERLLDNGIGIDLVCLSKPPLHSV  274

Query  503  PLFK  506
            PLF+
Sbjct  275  PLFR  278


>CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin 
(DEP).  The DEP domain is responsible for mediating intracellular 
protein targeting and regulation of protein stability 
in the cell. The DEP domain is present in a number of 
signaling molecules, including Regulator of G protein Signaling 
(RGS) proteins, and has been implicated in membrane targeting. 
New findings in yeast, however, demonstrate a major 
role for a DEP domain in mediating the interaction of an RGS 
protein to the C-terminal tail of a GPCR, thus placing RGS 
in close proximity with its substrate G protein alpha subunit.
Length=71

 Score = 105 bits (264),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (3%)

Query  1340  GVRMMDRRWHWRLHYNCFIGFEFTTWLLQNFRDIDSREEAVQFGNELMKHGLFQHVEKRH  1399
             GV++ DRR H + + NCF G E   WL+ N  +I +REEAV+ G  L+  GL  HV  +H
Sbjct  1     GVKLKDRRKHLKTYPNCFTGSEAVDWLMDNL-EIITREEAVELGQLLLDQGLIHHVGDKH  59

Query  1400  N-FRDGNYFYQI  1410
               F+D  YFY+ 
Sbjct  60    GLFKDSYYFYRF  71


>CDD:466071 pfam19418, DEPDC5_CTD, DEPDC5 protein C-terminal region.  This 
entry represents the C-terminal domain (CTD) (residues 1,291-1,603) 
of the DEPDC5 protein. It contains two structurally 
similar lobes and has a pseudo-2-fold rotational symmetry. 
Each half consists of a five-stranded beta-sheet, with an alpha-helix 
covering one side. The CTD is located in the core 
of DEPDC5 and contacts all the other domains of DEPDC5 except 
the NTD, making it the central organizer of this multi-domain 
protein.
Length=303

 Score = 75.1 bits (184),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 56/211 (27%), Positives = 86/211 (41%), Gaps = 38/211 (18%)

Query  1453  SRSESVETPATPSKSK----NKATIMLSKMMKYDVDPRKRSNRPEVIDLHYDRLHNPDNC  1508
             SR  S  + +   +S+      AT+   + +  DVD   R++R E    +Y    + +  
Sbjct  41    SRRHSSFSRSFGGRSQAAAYLAATVPEQRTVTLDVDVNNRTDRLEWCSCYYHGNFSLNAA  100

Query  1509  FHIELSWMNTTPKLIEDAVLSWAATAEKFGLKLVQVPIAEGCAISRTQPFRKPYRVSLAV  1568
             F I+L WM  T  ++ + V  W   A   G  L  VP+ EG       PF  P    L  
Sbjct  101   FEIKLHWMAVTAAVLFEMVQGWHRKATSCGFLL--VPVLEG-------PFALPS--YLYG  149

Query  1569  PPPPGPVPTVFNTATFSQLGSS------------DR-HYYHKALLRKFDFVLDFEARSAF  1615
              P    +    N +   + GS             DR H + +A+L +F FV D  + SAF
Sbjct  150   DPLRAQLFIPLNISCLLKEGSEHLFDSFEPETYWDRMHLFQEAILHRFGFVQDKYSASAF  209

Query  1616  PADVEVSYSWGTPDYQYPQYIHRSGSLLVQI  1646
                         P    PQYIH +G++ +Q+
Sbjct  210   ----------NFPAENKPQYIHVTGTVFLQL  230



Lambda      K        H        a         alpha
   0.317    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2321594464


Query= TCONS_00011134

Length=1836
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463510 pfam12257, IML1, Vacuolar membrane-associated protein ...  471     8e-154
CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, a...  105     1e-27 
CDD:466071 pfam19418, DEPDC5_CTD, DEPDC5 protein C-terminal regio...  75.1    1e-14 


>CDD:463510 pfam12257, IML1, Vacuolar membrane-associated protein Iml1.  
Proteins in this family contain a DEP domain, which is a globular 
domain of about 80 residues. This entry includes vacuolar 
membrane-associated protein Iml1 and DEP domain-containing 
protein 5/DDB_G0279099. In Saccharomyces cerevisiae, Iml1 
is a subunit of both the SEA (Seh1-associated) and Iml1 complexes 
(Iml1-Npr2-Npr3). SEA complex is associates dynamically 
with the vacuole and is involved in autophagy. Iml1 complex 
is required for non-nitrogen-starvation (NNS)-induced autophagy.
Length=278

 Score = 471 bits (1214),  Expect = 8e-154, Method: Composition-based stats.
 Identities = 165/304 (54%), Positives = 200/304 (66%), Gaps = 27/304 (9%)

Query  203  IAFRDQFLVRSDMWRLVMSELADKIIYKGQKIVFMGSIKATVKNIFIRGKKVLSGYFSPH  262
            + F+DQ+L RSDMWRL  SEL    +Y GQKI F+GSI+ATVK I+I GKKV SGY + +
Sbjct  2    LTFKDQYLSRSDMWRL-SSELVGTCVYVGQKISFLGSIRATVKEIYINGKKVFSGYITEN  60

Query  263  TIPVFRSESAKYVLFIQMSREMWDFDSEGTGDILFSRVINGFLPELFKRWANSDAKHLVT  322
            T  +FRSESA+Y +FIQMSREMWDFD +G  ++ F +V+NGFLPELFKRW      HLVT
Sbjct  61   TKIIFRSESARYTIFIQMSREMWDFDEDG--ELYFEKVVNGFLPELFKRWKELGTHHLVT  118

Query  323  IVLFTRVEYDSSALGGPLPLSSESLRCISSPNHAPTRDFYRVVVNDMASGHWTTILDELK  382
            IVLF+RV YD+S +        E  R          +DFYRVVV+  +SG WT+IL  LK
Sbjct  119  IVLFSRVFYDTSEIDDEAGPRDERGR--------LYKDFYRVVVDQESSGDWTSILVTLK  170

Query  383  KDFRTFLRDVSILKMDRPDTPTVDGVKVAPKNKPAIIAGRPSTALRGNILEAIHLASAHL  442
            K+F  F RD+                 +    K   IAGR S A++GNILEAI+LA    
Sbjct  171  KEFANFQRDIL----------------LHHHEKRTRIAGRNSPAIKGNILEAINLALNLF  214

Query  443  AYDHIDRDLVHTGTSIIVITPGSGVFEVSYESLSSTSEALADRGIAIDLVCLSPMPLHSV  502
               +IDRDL  TGTSIIVITPG+GVFEV Y+ L  T+E L D GI IDLVCLS  PLHSV
Sbjct  215  EDHYIDRDLRRTGTSIIVITPGTGVFEVDYDLLRLTTERLLDNGIGIDLVCLSKPPLHSV  274

Query  503  PLFK  506
            PLF+
Sbjct  275  PLFR  278


>CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin 
(DEP).  The DEP domain is responsible for mediating intracellular 
protein targeting and regulation of protein stability 
in the cell. The DEP domain is present in a number of 
signaling molecules, including Regulator of G protein Signaling 
(RGS) proteins, and has been implicated in membrane targeting. 
New findings in yeast, however, demonstrate a major 
role for a DEP domain in mediating the interaction of an RGS 
protein to the C-terminal tail of a GPCR, thus placing RGS 
in close proximity with its substrate G protein alpha subunit.
Length=71

 Score = 105 bits (264),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (3%)

Query  1340  GVRMMDRRWHWRLHYNCFIGFEFTTWLLQNFRDIDSREEAVQFGNELMKHGLFQHVEKRH  1399
             GV++ DRR H + + NCF G E   WL+ N  +I +REEAV+ G  L+  GL  HV  +H
Sbjct  1     GVKLKDRRKHLKTYPNCFTGSEAVDWLMDNL-EIITREEAVELGQLLLDQGLIHHVGDKH  59

Query  1400  N-FRDGNYFYQI  1410
               F+D  YFY+ 
Sbjct  60    GLFKDSYYFYRF  71


>CDD:466071 pfam19418, DEPDC5_CTD, DEPDC5 protein C-terminal region.  This 
entry represents the C-terminal domain (CTD) (residues 1,291-1,603) 
of the DEPDC5 protein. It contains two structurally 
similar lobes and has a pseudo-2-fold rotational symmetry. 
Each half consists of a five-stranded beta-sheet, with an alpha-helix 
covering one side. The CTD is located in the core 
of DEPDC5 and contacts all the other domains of DEPDC5 except 
the NTD, making it the central organizer of this multi-domain 
protein.
Length=303

 Score = 75.1 bits (184),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 56/211 (27%), Positives = 86/211 (41%), Gaps = 38/211 (18%)

Query  1453  SRSESVETPATPSKSK----NKATIMLSKMMKYDVDPRKRSNRPEVIDLHYDRLHNPDNC  1508
             SR  S  + +   +S+      AT+   + +  DVD   R++R E    +Y    + +  
Sbjct  41    SRRHSSFSRSFGGRSQAAAYLAATVPEQRTVTLDVDVNNRTDRLEWCSCYYHGNFSLNAA  100

Query  1509  FHIELSWMNTTPKLIEDAVLSWAATAEKFGLKLVQVPIAEGCAISRTQPFRKPYRVSLAV  1568
             F I+L WM  T  ++ + V  W   A   G  L  VP+ EG       PF  P    L  
Sbjct  101   FEIKLHWMAVTAAVLFEMVQGWHRKATSCGFLL--VPVLEG-------PFALPS--YLYG  149

Query  1569  PPPPGPVPTVFNTATFSQLGSS------------DR-HYYHKALLRKFDFVLDFEARSAF  1615
              P    +    N +   + GS             DR H + +A+L +F FV D  + SAF
Sbjct  150   DPLRAQLFIPLNISCLLKEGSEHLFDSFEPETYWDRMHLFQEAILHRFGFVQDKYSASAF  209

Query  1616  PADVEVSYSWGTPDYQYPQYIHRSGSLLVQI  1646
                         P    PQYIH +G++ +Q+
Sbjct  210   ----------NFPAENKPQYIHVTGTVFLQL  230



Lambda      K        H        a         alpha
   0.317    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2321594464


Query= TCONS_00011135

Length=1836
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463510 pfam12257, IML1, Vacuolar membrane-associated protein ...  471     8e-154
CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, a...  105     1e-27 
CDD:466071 pfam19418, DEPDC5_CTD, DEPDC5 protein C-terminal regio...  75.1    1e-14 


>CDD:463510 pfam12257, IML1, Vacuolar membrane-associated protein Iml1.  
Proteins in this family contain a DEP domain, which is a globular 
domain of about 80 residues. This entry includes vacuolar 
membrane-associated protein Iml1 and DEP domain-containing 
protein 5/DDB_G0279099. In Saccharomyces cerevisiae, Iml1 
is a subunit of both the SEA (Seh1-associated) and Iml1 complexes 
(Iml1-Npr2-Npr3). SEA complex is associates dynamically 
with the vacuole and is involved in autophagy. Iml1 complex 
is required for non-nitrogen-starvation (NNS)-induced autophagy.
Length=278

 Score = 471 bits (1214),  Expect = 8e-154, Method: Composition-based stats.
 Identities = 165/304 (54%), Positives = 200/304 (66%), Gaps = 27/304 (9%)

Query  203  IAFRDQFLVRSDMWRLVMSELADKIIYKGQKIVFMGSIKATVKNIFIRGKKVLSGYFSPH  262
            + F+DQ+L RSDMWRL  SEL    +Y GQKI F+GSI+ATVK I+I GKKV SGY + +
Sbjct  2    LTFKDQYLSRSDMWRL-SSELVGTCVYVGQKISFLGSIRATVKEIYINGKKVFSGYITEN  60

Query  263  TIPVFRSESAKYVLFIQMSREMWDFDSEGTGDILFSRVINGFLPELFKRWANSDAKHLVT  322
            T  +FRSESA+Y +FIQMSREMWDFD +G  ++ F +V+NGFLPELFKRW      HLVT
Sbjct  61   TKIIFRSESARYTIFIQMSREMWDFDEDG--ELYFEKVVNGFLPELFKRWKELGTHHLVT  118

Query  323  IVLFTRVEYDSSALGGPLPLSSESLRCISSPNHAPTRDFYRVVVNDMASGHWTTILDELK  382
            IVLF+RV YD+S +        E  R          +DFYRVVV+  +SG WT+IL  LK
Sbjct  119  IVLFSRVFYDTSEIDDEAGPRDERGR--------LYKDFYRVVVDQESSGDWTSILVTLK  170

Query  383  KDFRTFLRDVSILKMDRPDTPTVDGVKVAPKNKPAIIAGRPSTALRGNILEAIHLASAHL  442
            K+F  F RD+                 +    K   IAGR S A++GNILEAI+LA    
Sbjct  171  KEFANFQRDIL----------------LHHHEKRTRIAGRNSPAIKGNILEAINLALNLF  214

Query  443  AYDHIDRDLVHTGTSIIVITPGSGVFEVSYESLSSTSEALADRGIAIDLVCLSPMPLHSV  502
               +IDRDL  TGTSIIVITPG+GVFEV Y+ L  T+E L D GI IDLVCLS  PLHSV
Sbjct  215  EDHYIDRDLRRTGTSIIVITPGTGVFEVDYDLLRLTTERLLDNGIGIDLVCLSKPPLHSV  274

Query  503  PLFK  506
            PLF+
Sbjct  275  PLFR  278


>CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin 
(DEP).  The DEP domain is responsible for mediating intracellular 
protein targeting and regulation of protein stability 
in the cell. The DEP domain is present in a number of 
signaling molecules, including Regulator of G protein Signaling 
(RGS) proteins, and has been implicated in membrane targeting. 
New findings in yeast, however, demonstrate a major 
role for a DEP domain in mediating the interaction of an RGS 
protein to the C-terminal tail of a GPCR, thus placing RGS 
in close proximity with its substrate G protein alpha subunit.
Length=71

 Score = 105 bits (264),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (3%)

Query  1340  GVRMMDRRWHWRLHYNCFIGFEFTTWLLQNFRDIDSREEAVQFGNELMKHGLFQHVEKRH  1399
             GV++ DRR H + + NCF G E   WL+ N  +I +REEAV+ G  L+  GL  HV  +H
Sbjct  1     GVKLKDRRKHLKTYPNCFTGSEAVDWLMDNL-EIITREEAVELGQLLLDQGLIHHVGDKH  59

Query  1400  N-FRDGNYFYQI  1410
               F+D  YFY+ 
Sbjct  60    GLFKDSYYFYRF  71


>CDD:466071 pfam19418, DEPDC5_CTD, DEPDC5 protein C-terminal region.  This 
entry represents the C-terminal domain (CTD) (residues 1,291-1,603) 
of the DEPDC5 protein. It contains two structurally 
similar lobes and has a pseudo-2-fold rotational symmetry. 
Each half consists of a five-stranded beta-sheet, with an alpha-helix 
covering one side. The CTD is located in the core 
of DEPDC5 and contacts all the other domains of DEPDC5 except 
the NTD, making it the central organizer of this multi-domain 
protein.
Length=303

 Score = 75.1 bits (184),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 56/211 (27%), Positives = 86/211 (41%), Gaps = 38/211 (18%)

Query  1453  SRSESVETPATPSKSK----NKATIMLSKMMKYDVDPRKRSNRPEVIDLHYDRLHNPDNC  1508
             SR  S  + +   +S+      AT+   + +  DVD   R++R E    +Y    + +  
Sbjct  41    SRRHSSFSRSFGGRSQAAAYLAATVPEQRTVTLDVDVNNRTDRLEWCSCYYHGNFSLNAA  100

Query  1509  FHIELSWMNTTPKLIEDAVLSWAATAEKFGLKLVQVPIAEGCAISRTQPFRKPYRVSLAV  1568
             F I+L WM  T  ++ + V  W   A   G  L  VP+ EG       PF  P    L  
Sbjct  101   FEIKLHWMAVTAAVLFEMVQGWHRKATSCGFLL--VPVLEG-------PFALPS--YLYG  149

Query  1569  PPPPGPVPTVFNTATFSQLGSS------------DR-HYYHKALLRKFDFVLDFEARSAF  1615
              P    +    N +   + GS             DR H + +A+L +F FV D  + SAF
Sbjct  150   DPLRAQLFIPLNISCLLKEGSEHLFDSFEPETYWDRMHLFQEAILHRFGFVQDKYSASAF  209

Query  1616  PADVEVSYSWGTPDYQYPQYIHRSGSLLVQI  1646
                         P    PQYIH +G++ +Q+
Sbjct  210   ----------NFPAENKPQYIHVTGTVFLQL  230



Lambda      K        H        a         alpha
   0.317    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2321594464


Query= TCONS_00011137

Length=607


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.130    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00017539

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402305 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif dom...  121     6e-35


>CDD:402305 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain.  RanBPM 
is a scaffolding protein and is important in regulating 
cellular function in both the immune system and the nervous 
system. This domain is at the C-terminus of the proteins and 
is the binding domain for the CRA motif (for CT11-RanBPM), 
which is comprised of approximately 100 amino acids at the 
C terminal of RanBPM. It was found to be important for the 
interaction of RanBPM with fragile X mental retardation protein 
(FMRP), but its functional significance has yet to be determined. 
This region contains CTLH and CRA domains annotated 
by SMART; however, these may be a single domain, and it is 
refereed to as a C-terminal to LisH motif.
Length=143

 Score = 121 bits (305),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 76/150 (51%), Gaps = 9/150 (6%)

Query  69   SIQERVEIRTAIHSGNIQAAIEKINDLNPQILDENPSLHFALLRLQLVELIRTCMSTPNG  128
              +ER  I  AI +G+I  AIE  N+  P++L  N +L F L   Q +ELIR      +G
Sbjct  1    VFKERNRILEAILNGDITEAIEWCNENKPELLKINSNLEFELRLQQFIELIR------SG  54

Query  129  DISPALEFATSQLAPRAPTNPQFLEDLERTLALLIFPTENLAPSLAPLLHPDLRKDIATR  188
             I  ALE+A   LAP    N + L++LE+ + LL FP    +     LL P   + +A+ 
Sbjct  55   KILEALEYARENLAPF---NEEHLKELEKLMGLLAFPDPTDSSPYKSLLSPSRWEKLASE  111

Query  189  VNEAILQSQGARKEARLRNLVKLRAWAEQK  218
             N AIL+  G   E+ L  L+K    A + 
Sbjct  112  FNRAILKLLGLSSESPLEILLKAGLSALKT  141



Lambda      K        H        a         alpha
   0.313    0.129    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00011138

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00011139

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00017540

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402305 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif dom...  120     1e-34


>CDD:402305 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain.  RanBPM 
is a scaffolding protein and is important in regulating 
cellular function in both the immune system and the nervous 
system. This domain is at the C-terminus of the proteins and 
is the binding domain for the CRA motif (for CT11-RanBPM), 
which is comprised of approximately 100 amino acids at the 
C terminal of RanBPM. It was found to be important for the 
interaction of RanBPM with fragile X mental retardation protein 
(FMRP), but its functional significance has yet to be determined. 
This region contains CTLH and CRA domains annotated 
by SMART; however, these may be a single domain, and it is 
refereed to as a C-terminal to LisH motif.
Length=143

 Score = 120 bits (303),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 76/150 (51%), Gaps = 9/150 (6%)

Query  65   SIQERVEIRTAIHSGNIQAAIEKINDLNPQVLDENPSLHFALLRLQLVELIRTCMSTPNG  124
              +ER  I  AI +G+I  AIE  N+  P++L  N +L F L   Q +ELIR      +G
Sbjct  1    VFKERNRILEAILNGDITEAIEWCNENKPELLKINSNLEFELRLQQFIELIR------SG  54

Query  125  DISPALEFATSQLAPRAPTNPQFLEDLERTLALLIFPTENLAPSLAPLLHPDLRKDIATR  184
             I  ALE+A   LAP    N + L++LE+ + LL FP    +     LL P   + +A+ 
Sbjct  55   KILEALEYARENLAPF---NEEHLKELEKLMGLLAFPDPTDSSPYKSLLSPSRWEKLASE  111

Query  185  VNEAILQSQGARKEARLRNLVKLRAWAEQK  214
             N AIL+  G   E+ L  L+K    A + 
Sbjct  112  FNRAILKLLGLSSESPLEILLKAGLSALKT  141



Lambda      K        H        a         alpha
   0.314    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00011140

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402305 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif dom...  120     6e-35


>CDD:402305 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain.  RanBPM 
is a scaffolding protein and is important in regulating 
cellular function in both the immune system and the nervous 
system. This domain is at the C-terminus of the proteins and 
is the binding domain for the CRA motif (for CT11-RanBPM), 
which is comprised of approximately 100 amino acids at the 
C terminal of RanBPM. It was found to be important for the 
interaction of RanBPM with fragile X mental retardation protein 
(FMRP), but its functional significance has yet to be determined. 
This region contains CTLH and CRA domains annotated 
by SMART; however, these may be a single domain, and it is 
refereed to as a C-terminal to LisH motif.
Length=143

 Score = 120 bits (304),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 76/150 (51%), Gaps = 9/150 (6%)

Query  65   SIQERVEIRTAIHSGNIQAAIEKINDLNPQILDENPSLHFALLRLQLVELIRTCMSTPNG  124
              +ER  I  AI +G+I  AIE  N+  P++L  N +L F L   Q +ELIR      +G
Sbjct  1    VFKERNRILEAILNGDITEAIEWCNENKPELLKINSNLEFELRLQQFIELIR------SG  54

Query  125  DISPALEFATSQLAPRAPTNPQFLEDLERTLALLIFPTENLAPSLAPLLHPDLRKDIATR  184
             I  ALE+A   LAP    N + L++LE+ + LL FP    +     LL P   + +A+ 
Sbjct  55   KILEALEYARENLAPF---NEEHLKELEKLMGLLAFPDPTDSSPYKSLLSPSRWEKLASE  111

Query  185  VNEAILQSQGARKEARLRNLVKLRAWAEQK  214
             N AIL+  G   E+ L  L+K    A + 
Sbjct  112  FNRAILKLLGLSSESPLEILLKAGLSALKT  141



Lambda      K        H        a         alpha
   0.314    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00017541

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402305 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif dom...  68.4    4e-16


>CDD:402305 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain.  RanBPM 
is a scaffolding protein and is important in regulating 
cellular function in both the immune system and the nervous 
system. This domain is at the C-terminus of the proteins and 
is the binding domain for the CRA motif (for CT11-RanBPM), 
which is comprised of approximately 100 amino acids at the 
C terminal of RanBPM. It was found to be important for the 
interaction of RanBPM with fragile X mental retardation protein 
(FMRP), but its functional significance has yet to be determined. 
This region contains CTLH and CRA domains annotated 
by SMART; however, these may be a single domain, and it is 
refereed to as a C-terminal to LisH motif.
Length=143

 Score = 68.4 bits (168),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 31/92 (34%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query  5    NGDISPALEFATSQLAPRAPTNPQFLEDLERTLALLIFPTENLAPSLAPLLHPDLRKDIA  64
            +G I  ALE+A   LAP    N + L++LE+ + LL FP    +     LL P   + +A
Sbjct  53   SGKILEALEYARENLAPF---NEEHLKELEKLMGLLAFPDPTDSSPYKSLLSPSRWEKLA  109

Query  65   TRVNEAILQSQGARKEARLRNLVKLRAWAEQK  96
            +  N AIL+  G   E+ L  L+K    A + 
Sbjct  110  SEFNRAILKLLGLSSESPLEILLKAGLSALKT  141



Lambda      K        H        a         alpha
   0.311    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00011141

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00017542

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463722 pfam12830, Nipped-B_C, Sister chromatid cohesion C-ter...  215     3e-67


>CDD:463722 pfam12830, Nipped-B_C, Sister chromatid cohesion C-terminus. 
 This domain lies towards the C-terminus of nipped-B or sister 
chromatid cohesion proteins.
Length=180

 Score = 215 bits (549),  Expect = 3e-67, Method: Composition-based stats.
 Identities = 72/187 (39%), Positives = 108/187 (58%), Gaps = 7/187 (4%)

Query  193  AALIAQHFLQSMLRVAQSRQDAYALTAIELIASINRQGLVHPKECAGVLVSLETSTVPAI  252
             + + Q +L+ +L +  S  D   L A+E++A I RQGLVHPKEC   L++LETS  P I
Sbjct  1    CSALVQRYLKHILEICLSSDDQVRLLALEVLALILRQGLVHPKECIPTLIALETSPNPYI  60

Query  253  AKVAFDTHKMLHQQYESMFEREYMRAVQEAFYYQRDVVGDPSGALARPYVAKLAPLFDII  312
             K+AF+ HK LH+++ES+ E  YM  ++ AF YQR V    SGA   P  + L+ L+ ++
Sbjct  61   RKLAFELHKELHEKHESLLESRYMEGIRLAFEYQRRV---LSGATLEPPTSFLSLLYSLL  117

Query  313  KTSNSRYQKKFLSNLCSKVDFELKKLDSTGDPPEHLLLTRFVAQNLAFFDYGQLAELVSA  372
            + SN + +KKFL +L            S+   P  L   RF+A+NLAF  Y    E++  
Sbjct  118  R-SNKKSRKKFLKSLVKLFF---DLDLSSESSPSDLDFLRFLAENLAFLPYQTQDEVLFL  173

Query  373  VECMERI  379
            +  ++RI
Sbjct  174  IHHIDRI  180



Lambda      K        H        a         alpha
   0.316    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 750202856


Query= TCONS_00011142

Length=691


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 881924420


Query= TCONS_00017543

Length=691


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 881924420


Query= TCONS_00017544

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00017545

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426046 pfam01096, TFIIS_C, Transcription factor S-II (TFIIS)      58.0    5e-13


>CDD:426046 pfam01096, TFIIS_C, Transcription factor S-II (TFIIS).  
Length=39

 Score = 58.0 bits (141),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 25/38 (66%), Gaps = 1/38 (3%)

Query  81   HTCARCGRKEMYFTTVQLRSADEGSTVFYTCV-CGYKY  117
              C +CG +E YF  +Q RSADE  TVFY C  CG+++
Sbjct  1    AKCPKCGNREAYFFQLQTRSADEPMTVFYVCTKCGHRW  38



Lambda      K        H        a         alpha
   0.320    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00011144

Length=101
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431498 pfam10791, F1F0-ATPsyn_F, Mitochondrial F1-F0 ATP synt...  159     2e-53


>CDD:431498 pfam10791, F1F0-ATPsyn_F, Mitochondrial F1-F0 ATP synthase subunit 
F of fungi.  The membrane bound F1-FO-type H+ ATP synthase 
of mitochondria catalyzes the terminal step in oxidative 
respiration converting the generation of the electrochemical 
gradient into ATP for cellular biosynthesis. The general 
structure and the core subunits of the enzyme are highly conserved 
in both prokaryotic and eukaryotic organisms.
Length=87

 Score = 159 bits (405),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 60/87 (69%), Positives = 73/87 (84%), Gaps = 1/87 (1%)

Query  9   LSTLIPPKIASPNAIGAAKDAARMERVVNFYARLPRGSAPEVKPTGLIGRYQARYF-GKN  67
           LSTLIPPKIASP A+G+A +AARM RVV+FY++LP+G AP  KP GL+GRY+A+YF GKN
Sbjct  1   LSTLIPPKIASPKALGSAPNAARMARVVSFYSKLPKGPAPAPKPKGLLGRYKAKYFDGKN  60

Query  68  PSAAPLAHAIGGILLIGYSMEYYFHLR  94
            S  PL H IGG+ L+GYS+EYYFHLR
Sbjct  61  ASGKPLLHLIGGLFLLGYSIEYYFHLR  87



Lambda      K        H        a         alpha
   0.323    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00011143

Length=101
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431498 pfam10791, F1F0-ATPsyn_F, Mitochondrial F1-F0 ATP synt...  159     2e-53


>CDD:431498 pfam10791, F1F0-ATPsyn_F, Mitochondrial F1-F0 ATP synthase subunit 
F of fungi.  The membrane bound F1-FO-type H+ ATP synthase 
of mitochondria catalyzes the terminal step in oxidative 
respiration converting the generation of the electrochemical 
gradient into ATP for cellular biosynthesis. The general 
structure and the core subunits of the enzyme are highly conserved 
in both prokaryotic and eukaryotic organisms.
Length=87

 Score = 159 bits (405),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 60/87 (69%), Positives = 73/87 (84%), Gaps = 1/87 (1%)

Query  9   LSTLIPPKIASPNAIGAAKDAARMERVVNFYARLPRGSAPEVKPTGLIGRYQARYF-GKN  67
           LSTLIPPKIASP A+G+A +AARM RVV+FY++LP+G AP  KP GL+GRY+A+YF GKN
Sbjct  1   LSTLIPPKIASPKALGSAPNAARMARVVSFYSKLPKGPAPAPKPKGLLGRYKAKYFDGKN  60

Query  68  PSAAPLAHAIGGILLIGYSMEYYFHLR  94
            S  PL H IGG+ L+GYS+EYYFHLR
Sbjct  61  ASGKPLLHLIGGLFLLGYSIEYYFHLR  87



Lambda      K        H        a         alpha
   0.323    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0823    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00011145

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460362 pfam01853, MOZ_SAS, MOZ/SAS family. This region of the...  356     9e-126
CDD:407644 pfam17772, zf-MYST, MYST family zinc finger domain. Th...  90.4    9e-24 


>CDD:460362 pfam01853, MOZ_SAS, MOZ/SAS family.  This region of these proteins 
has been suggested to be homologous to acetyltransferases.
Length=179

 Score = 356 bits (916),  Expect = 9e-126, Method: Composition-based stats.
 Identities = 117/176 (66%), Positives = 145/176 (82%), Gaps = 0/176 (0%)

Query  129  PPGNEIYRDDYISFFEVDGRRQRTWCRNLCLLSKLFLDHKTLYYDVDPFLFYCMCTRDET  188
            PPGNEIYR   IS FEVDGR+Q+ +C+NLCLL+KLFLDHKTLYYDV+PFLFY +   DET
Sbjct  1    PPGNEIYRKGNISIFEVDGRKQKLYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTETDET  60

Query  189  GCHLVGYFSKEKDSAEGYNLACILTLPQYQRRGFGRLLISFSYELSKREGKLGSPEKPLS  248
            GCH+VGYFSKEK+S++ YNLACILTLP YQR+G+G+LLI FSYELSKREGK+G PEKPLS
Sbjct  61   GCHIVGYFSKEKESSDNYNLACILTLPPYQRKGYGKLLIEFSYELSKREGKIGGPEKPLS  120

Query  249  DLGLLGYRQYWRETLVEILMEPGRETVSENELALLTSMTEKDVHETLVVLNMLRYY  304
            DLGLL YR YW E ++E L++  +E +S  +++  T +T +D+  TL  LNML+YY
Sbjct  121  DLGLLSYRSYWSEVILEYLLKHRKEGISIEDISKATGITPEDIISTLQSLNMLKYY  176


>CDD:407644 pfam17772, zf-MYST, MYST family zinc finger domain.  This zinc 
finger domain is found in the MYST family of histone acetyltransferases.
Length=55

 Score = 90.4 bits (225),  Expect = 9e-24, Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 42/55 (76%), Gaps = 0/55 (0%)

Query  70   VRNLNRLQMGKYDIEPWYFSPYPASFSDADIIYIDEFCLSYFDDKRAFERHRTKC  124
            V+N+ ++Q G+Y+I+ WYFSPYP  +++ D +Y+ EFCL Y   +++++RHR KC
Sbjct  1    VKNIEKIQFGRYEIDTWYFSPYPEEYTNVDKLYVCEFCLKYMKSRKSYKRHRKKC  55



Lambda      K        H        a         alpha
   0.321    0.139    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00011146

Length=1350


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1723503200


Query= TCONS_00011147

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460362 pfam01853, MOZ_SAS, MOZ/SAS family. This region of the...  356     9e-126
CDD:407644 pfam17772, zf-MYST, MYST family zinc finger domain. Th...  90.4    9e-24 


>CDD:460362 pfam01853, MOZ_SAS, MOZ/SAS family.  This region of these proteins 
has been suggested to be homologous to acetyltransferases.
Length=179

 Score = 356 bits (916),  Expect = 9e-126, Method: Composition-based stats.
 Identities = 117/176 (66%), Positives = 145/176 (82%), Gaps = 0/176 (0%)

Query  129  PPGNEIYRDDYISFFEVDGRRQRTWCRNLCLLSKLFLDHKTLYYDVDPFLFYCMCTRDET  188
            PPGNEIYR   IS FEVDGR+Q+ +C+NLCLL+KLFLDHKTLYYDV+PFLFY +   DET
Sbjct  1    PPGNEIYRKGNISIFEVDGRKQKLYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTETDET  60

Query  189  GCHLVGYFSKEKDSAEGYNLACILTLPQYQRRGFGRLLISFSYELSKREGKLGSPEKPLS  248
            GCH+VGYFSKEK+S++ YNLACILTLP YQR+G+G+LLI FSYELSKREGK+G PEKPLS
Sbjct  61   GCHIVGYFSKEKESSDNYNLACILTLPPYQRKGYGKLLIEFSYELSKREGKIGGPEKPLS  120

Query  249  DLGLLGYRQYWRETLVEILMEPGRETVSENELALLTSMTEKDVHETLVVLNMLRYY  304
            DLGLL YR YW E ++E L++  +E +S  +++  T +T +D+  TL  LNML+YY
Sbjct  121  DLGLLSYRSYWSEVILEYLLKHRKEGISIEDISKATGITPEDIISTLQSLNMLKYY  176


>CDD:407644 pfam17772, zf-MYST, MYST family zinc finger domain.  This zinc 
finger domain is found in the MYST family of histone acetyltransferases.
Length=55

 Score = 90.4 bits (225),  Expect = 9e-24, Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 42/55 (76%), Gaps = 0/55 (0%)

Query  70   VRNLNRLQMGKYDIEPWYFSPYPASFSDADIIYIDEFCLSYFDDKRAFERHRTKC  124
            V+N+ ++Q G+Y+I+ WYFSPYP  +++ D +Y+ EFCL Y   +++++RHR KC
Sbjct  1    VKNIEKIQFGRYEIDTWYFSPYPEEYTNVDKLYVCEFCLKYMKSRKSYKRHRKKC  55



Lambda      K        H        a         alpha
   0.321    0.139    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00011148

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462259 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). Th...  289     1e-95


>CDD:462259 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis).  This nucleolar 
family of proteins are involved in 60S ribosomal biogenesis. 
They are specifically involved in the processing beyond 
the 27S stage of 25S rRNA maturation. This family contains 
sequences that bear similarity to the glioma tumor suppressor 
candidate region gene 2 protein (p60). This protein has 
been found to interact with herpes simplex type 1 regulatory 
proteins.
Length=353

 Score = 289 bits (742),  Expect = 1e-95, Method: Composition-based stats.
 Identities = 171/396 (43%), Positives = 229/396 (58%), Gaps = 61/396 (15%)

Query  15   SRKGKKAWRKNVDVTEVQEGLRLLKDEEIKGGVLAEKPSEELFVIDKKGSAEIRNAYFKQ  74
            SRKGKKAWRKN+D+T+V++GL  +++E I GGVL+EKP +ELFV+D KG  E++    K+
Sbjct  1    SRKGKKAWRKNIDITDVEDGLEEVREEIITGGVLSEKPDDELFVVDTKGDEELKKKLRKK  60

Query  75   H-KPLKADEILAQRSAIPAVD-TRKRLNSKVTDGVIEPKSKKHKSDWVTRKEWLRLKQVA  132
              KPLK+DEILAQRSA+PAV   RKR           P +KK K   V++KE  RL+++A
Sbjct  61   IKKPLKSDEILAQRSAVPAVSHKRKR-----------PGAKKLKKKKVSKKELARLRKLA  109

Query  133  KEANPTQTAEE---------SELYDPWADSEDP---TPVEDPQFDYLEKPKPKVAPPTIK  180
            K     +   E         S  YD W + E+P      E+    +LEK K   AP T+K
Sbjct  110  KGKRKGEKKLEKSAKDGLVFSGTYDLWGEEEEPEVEKKEEEHTLSFLEKKKKVKAPKTLK  169

Query  181  QPPISLAANGKPIPSVRKPDAGISYNPSFEDWDRLLQEKGHEAVEAEKKRLEEERKEQER  240
              PISL A     P+V  P AG SYNPSFED   LLQ    +AVEAEKK           
Sbjct  170  HKPISLTAL----PAVEVPHAGTSYNPSFEDHQELLQ----KAVEAEKK-----------  210

Query  241  QRLIAEAQNDDGEVKSDDESAWEGFESEYEKPEWLNKKRPARKTKAERNRIKRRKEAERK  300
               + E +  +  V      +    E+  EK          RKTKA+RN+ KRRKE ER+
Sbjct  211  --RLKEEEKLE-RVLEKIAESAATAEAREEK----------RKTKAQRNKEKRRKEEERE  257

Query  301  ARWEAKMKQKEEQLEQAKAIAEQVQQRQLERSRESGD----DSSEEGDDAALRRKPLGKA  356
            A+ E  +K+K  QLE+ K IA+++ +++ ER  ++         ++ ++  LR + LGK 
Sbjct  258  AKEEKALKKKLAQLERLKEIAKEIAEKEKEREEKAEARKREKRKKKKEEKKLRPRKLGKH  317

Query  357  RVPEKPLEVVLPDELQDSLRLLKPEGNLLDDRFRTL  392
            +VPE  LEV LPDEL  SLRLLKPEGNLL DRF++L
Sbjct  318  KVPEPDLEVQLPDELSGSLRLLKPEGNLLKDRFKSL  353



Lambda      K        H        a         alpha
   0.308    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00011149

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462259 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). Th...  242     5e-78


>CDD:462259 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis).  This nucleolar 
family of proteins are involved in 60S ribosomal biogenesis. 
They are specifically involved in the processing beyond 
the 27S stage of 25S rRNA maturation. This family contains 
sequences that bear similarity to the glioma tumor suppressor 
candidate region gene 2 protein (p60). This protein has 
been found to interact with herpes simplex type 1 regulatory 
proteins.
Length=353

 Score = 242 bits (619),  Expect = 5e-78, Method: Composition-based stats.
 Identities = 145/369 (39%), Positives = 202/369 (55%), Gaps = 61/369 (17%)

Query  15   SRKGKKAWRKNVDVTEVQEGLRLLKDEEIKGGVLAEKPSEELFVIDKKGSAEIRNAYFKQ  74
            SRKGKKAWRKN+D+T+V++GL  +++E I GGVL+EKP +ELFV+D KG  E++    K+
Sbjct  1    SRKGKKAWRKNIDITDVEDGLEEVREEIITGGVLSEKPDDELFVVDTKGDEELKKKLRKK  60

Query  75   H-KPLKADEILAQRSAIPAVD-TRKRLNSKVTDGVIEPKSKKHKSDWVTRKEWLRLKQVA  132
              KPLK+DEILAQRSA+PAV   RKR           P +KK K   V++KE  RL+++A
Sbjct  61   IKKPLKSDEILAQRSAVPAVSHKRKR-----------PGAKKLKKKKVSKKELARLRKLA  109

Query  133  KEANPTQTAEE---------SELYDPWADSEDP---TPVEDPQFDYLEKPKPKVAPPTIK  180
            K     +   E         S  YD W + E+P      E+    +LEK K   AP T+K
Sbjct  110  KGKRKGEKKLEKSAKDGLVFSGTYDLWGEEEEPEVEKKEEEHTLSFLEKKKKVKAPKTLK  169

Query  181  QPPISLAANGKPIPSVRKPDAGISYNPSFEDWDRLLQEKGHEAVEAEKKRLEEERKEQER  240
              PISL A     P+V  P AG SYNPSFED   LLQ    +AVEAEKK           
Sbjct  170  HKPISLTAL----PAVEVPHAGTSYNPSFEDHQELLQ----KAVEAEKK-----------  210

Query  241  QRLIAEAQNDDGEVKSDDESAWEGFESEYEKPEWLNKKRPARKTKAERNRIKRRKEAERK  300
               + E +  +  V      +    E+  EK          RKTKA+RN+ KRRKE ER+
Sbjct  211  --RLKEEEKLE-RVLEKIAESAATAEAREEK----------RKTKAQRNKEKRRKEEERE  257

Query  301  ARWEAKMKQKEEQLEQAKAIAEQVQQRQLERSRESGD----DSSEEGDDAALRRKPLGKA  356
            A+ E  +K+K  QLE+ K IA+++ +++ ER  ++         ++ ++  LR + LGK 
Sbjct  258  AKEEKALKKKLAQLERLKEIAKEIAEKEKEREEKAEARKREKRKKKKEEKKLRPRKLGKH  317

Query  357  RYVFLGLDF  365
            +     L+ 
Sbjct  318  KVPEPDLEV  326



Lambda      K        H        a         alpha
   0.309    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00011150

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395743 pfam00929, RNase_T, Exonuclease. This family includes ...  79.3    1e-19


>CDD:395743 pfam00929, RNase_T, Exonuclease.  This family includes a variety 
of exonuclease proteins, such as ribonuclease T and the 
epsilon subunit of DNA polymerase III.;.
Length=164

 Score = 79.3 bits (196),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 24/168 (14%)

Query  1    MDCEMVGVGPNPDNDSALARVSIVN-FNGE-QVYDSYVRPKEM--ITDWRTHVSGISPKH  56
            +D E  G+ P  D    +A V I    N   + + +YV+P  +  +TD  T  +GI+   
Sbjct  3    IDLETTGLDPEKDEIIEIAAVVIDGGENEIGETFHTYVKPTRLPKLTDECTKFTGITQAM  62

Query  57   MAEARSLEQVQKDVAEILD-GRILVGHAVSNDLDALLLGHPKRDIR-----DTSKHPPY-  109
            +    S E+V ++  E L  G +LV H  S       +G  + D +        K  P  
Sbjct  63   LDNKPSFEEVLEEFLEFLRKGNLLVAHNAS-----FDVGFLRYDDKRFLKKPMPKLNPVI  117

Query  110  -------RKIAGGGSPRLKILASEFLGLNIQDGAHSSVEDAKATMLLY  150
                             L  LA +    +I   AH +++DA+AT  L+
Sbjct  118  DTLILDKATYKELPGRSLDALAEKLGLEHIGR-AHRALDDARATAKLF  164



Lambda      K        H        a         alpha
   0.315    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00011151

Length=310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395743 pfam00929, RNase_T, Exonuclease. This family includes ...  84.7    1e-20


>CDD:395743 pfam00929, RNase_T, Exonuclease.  This family includes a variety 
of exonuclease proteins, such as ribonuclease T and the 
epsilon subunit of DNA polymerase III.;.
Length=164

 Score = 84.7 bits (210),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 69/170 (41%), Gaps = 24/170 (14%)

Query  117  VAMDCEMVGVGPNPDNDSALARVSIVN-FNGE-QVYDSYVRPKEM--ITDWRTHVSGISP  172
            V +D E  G+ P  D    +A V I    N   + + +YV+P  +  +TD  T  +GI+ 
Sbjct  1    VVIDLETTGLDPEKDEIIEIAAVVIDGGENEIGETFHTYVKPTRLPKLTDECTKFTGITQ  60

Query  173  KHMAEARSLEQVQKDVAEILD-GRILVGHAVSNDLDALLLGHPKRDIR-----DTSKHPP  226
              +    S E+V ++  E L  G +LV H  S       +G  + D +        K  P
Sbjct  61   AMLDNKPSFEEVLEEFLEFLRKGNLLVAHNAS-----FDVGFLRYDDKRFLKKPMPKLNP  115

Query  227  Y--------RKIAGGGSPRLKILASEFLGLNIQDGAHSSVEDAKATMLLY  268
                               L  LA +    +I   AH +++DA+AT  L+
Sbjct  116  VIDTLILDKATYKELPGRSLDALAEKLGLEHIGR-AHRALDDARATAKLF  164



Lambda      K        H        a         alpha
   0.308    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 355153814


Query= TCONS_00017547

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461705 pfam05652, DcpS, Scavenger mRNA decapping enzyme (DcpS...  161     3e-51
CDD:463415 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-t...  88.0    1e-22


>CDD:461705 pfam05652, DcpS, Scavenger mRNA decapping enzyme (DcpS) N-terminal. 
 This family consists of several scavenger mRNA decapping 
enzymes (DcpS) and is the N-terminal domain of these proteins. 
DcpS is a scavenger pyrophosphatase that hydrolyzes 
the residual cap structure following 3' to 5' decay of an mRNA. 
The association of DcpS with 3' to 5' exonuclease exosome 
components suggests that these two activities are linked and 
there is a coupled exonucleolytic decay-dependent decapping 
pathway.
Length=103

 Score = 161 bits (410),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 52/106 (49%), Positives = 69/106 (65%), Gaps = 3/106 (3%)

Query  14   ALIPKFEVNRLLKQDQNGRRIAILGYIDGKQGILIAERAAFATESLEVLKAFHAAISSVD  73
            AL+PKF+  R+L QD   +RI++LG ID +  ILI E+ AF T+    L +F + +  + 
Sbjct  1    ALLPKFKFERVLNQDPQTKRISLLGTIDDQPAILILEKTAFPTDE-VYLYSFPSLLQELK  59

Query  74   NLGDNDIYRWYLANTGAGQGGQQFHDLKLNLIWPCTEKHIKKYSDQ  119
            NLG NDIY WYLA     Q  ++  DLK+NLI+P TE HIKKYS Q
Sbjct  60   NLGANDIYHWYLAWL--SQDLEELPDLKINLIYPATETHIKKYSKQ  103


>CDD:463415 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding. 
 This family consists of several scavenger mRNA decapping 
enzymes (DcpS) and is the C-terminal region. DcpS is a scavenger 
pyrophosphatase that hydrolyzes the residual cap structure 
following 3' to 5' decay of an mRNA. The association 
of DcpS with 3' to 5' exonuclease exosome components suggests 
that these two activities are linked and there is a coupled 
exonucleolytic decay-dependent decapping pathway. The C-terminal 
domain contains a histidine triad (HIT) sequence with 
three histidines separated by hydrophobic residues. The central 
histidine within the DcpS HIT motif is critical for decapping 
activity and defines the HIT motif as a new mRNA decapping 
domain, making DcpS the first member of the HIT family 
of proteins with a defined biological function.
Length=114

 Score = 88.0 bits (219),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 30/98 (31%), Positives = 52/98 (53%), Gaps = 11/98 (11%)

Query  149  NWVFNILEGRTEQEDVILRDAGEGPDDGFLMLPDLNWDRKTMSSLHLLALVQRRDIWSLR  208
             WVF I+    E E V+  D      +GF++  D+   +   + LHLL +  +R I SLR
Sbjct  1    KWVFCIIAKGEEPERVVYED------EGFVVFKDIK-PK---APLHLLVIP-KRHIKSLR  49

Query  209  DLKKKHIRWLRYLRQRLLEGTVKMYPELEQDQLKLYVH  246
            DL  +H+  L ++R+   +   + Y  +++D+L+L  H
Sbjct  50   DLTPEHLPLLEHMREVAKKVIEEKYIGVDRDELRLGFH  87



Lambda      K        H        a         alpha
   0.322    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00011152

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461705 pfam05652, DcpS, Scavenger mRNA decapping enzyme (DcpS...  159     5e-50
CDD:463415 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-t...  122     4e-35


>CDD:461705 pfam05652, DcpS, Scavenger mRNA decapping enzyme (DcpS) N-terminal. 
 This family consists of several scavenger mRNA decapping 
enzymes (DcpS) and is the N-terminal domain of these proteins. 
DcpS is a scavenger pyrophosphatase that hydrolyzes 
the residual cap structure following 3' to 5' decay of an mRNA. 
The association of DcpS with 3' to 5' exonuclease exosome 
components suggests that these two activities are linked and 
there is a coupled exonucleolytic decay-dependent decapping 
pathway.
Length=103

 Score = 159 bits (406),  Expect = 5e-50, Method: Composition-based stats.
 Identities = 52/106 (49%), Positives = 69/106 (65%), Gaps = 3/106 (3%)

Query  14   ALIPKFEVNRLLKQDQNGRRIAILGYIDGKQGILIAERAAFATESLEVLKAFHAAISSVD  73
            AL+PKF+  R+L QD   +RI++LG ID +  ILI E+ AF T+    L +F + +  + 
Sbjct  1    ALLPKFKFERVLNQDPQTKRISLLGTIDDQPAILILEKTAFPTDE-VYLYSFPSLLQELK  59

Query  74   NLGDNDIYRWYLANTGAGQGGQQFHDLKLNLIWPCTEKHIKKYSDQ  119
            NLG NDIY WYLA     Q  ++  DLK+NLI+P TE HIKKYS Q
Sbjct  60   NLGANDIYHWYLAWL--SQDLEELPDLKINLIYPATETHIKKYSKQ  103


>CDD:463415 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding. 
 This family consists of several scavenger mRNA decapping 
enzymes (DcpS) and is the C-terminal region. DcpS is a scavenger 
pyrophosphatase that hydrolyzes the residual cap structure 
following 3' to 5' decay of an mRNA. The association 
of DcpS with 3' to 5' exonuclease exosome components suggests 
that these two activities are linked and there is a coupled 
exonucleolytic decay-dependent decapping pathway. The C-terminal 
domain contains a histidine triad (HIT) sequence with 
three histidines separated by hydrophobic residues. The central 
histidine within the DcpS HIT motif is critical for decapping 
activity and defines the HIT motif as a new mRNA decapping 
domain, making DcpS the first member of the HIT family 
of proteins with a defined biological function.
Length=114

 Score = 122 bits (308),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 65/117 (56%), Gaps = 11/117 (9%)

Query  149  NWVFNILEGRTEQEDVILRDAGEGPDDGFLMLPDLNWDRKTMSSLHLLALVQRRDIWSLR  208
             WVF I+    E E V+  D      +GF++  D+   +   + LHLL +  +R I SLR
Sbjct  1    KWVFCIIAKGEEPERVVYED------EGFVVFKDIK-PK---APLHLLVIP-KRHIKSLR  49

Query  209  DLKKKHIRWLRYLRQRLLEGTVKMYPELEQDQLKLYVHYQPTYYHFHIHVVNVMLEA  265
            DL  +H+  L ++R+   +   + Y  +++D+L+L  HY P+ YH H+HV++   E+
Sbjct  50   DLTPEHLPLLEHMREVAKKVIEEKYIGVDRDELRLGFHYPPSVYHLHLHVISPDFES  106



Lambda      K        H        a         alpha
   0.320    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00011153

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461705 pfam05652, DcpS, Scavenger mRNA decapping enzyme (DcpS...  161     3e-51
CDD:463415 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-t...  88.0    1e-22


>CDD:461705 pfam05652, DcpS, Scavenger mRNA decapping enzyme (DcpS) N-terminal. 
 This family consists of several scavenger mRNA decapping 
enzymes (DcpS) and is the N-terminal domain of these proteins. 
DcpS is a scavenger pyrophosphatase that hydrolyzes 
the residual cap structure following 3' to 5' decay of an mRNA. 
The association of DcpS with 3' to 5' exonuclease exosome 
components suggests that these two activities are linked and 
there is a coupled exonucleolytic decay-dependent decapping 
pathway.
Length=103

 Score = 161 bits (410),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 52/106 (49%), Positives = 69/106 (65%), Gaps = 3/106 (3%)

Query  14   ALIPKFEVNRLLKQDQNGRRIAILGYIDGKQGILIAERAAFATESLEVLKAFHAAISSVD  73
            AL+PKF+  R+L QD   +RI++LG ID +  ILI E+ AF T+    L +F + +  + 
Sbjct  1    ALLPKFKFERVLNQDPQTKRISLLGTIDDQPAILILEKTAFPTDE-VYLYSFPSLLQELK  59

Query  74   NLGDNDIYRWYLANTGAGQGGQQFHDLKLNLIWPCTEKHIKKYSDQ  119
            NLG NDIY WYLA     Q  ++  DLK+NLI+P TE HIKKYS Q
Sbjct  60   NLGANDIYHWYLAWL--SQDLEELPDLKINLIYPATETHIKKYSKQ  103


>CDD:463415 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding. 
 This family consists of several scavenger mRNA decapping 
enzymes (DcpS) and is the C-terminal region. DcpS is a scavenger 
pyrophosphatase that hydrolyzes the residual cap structure 
following 3' to 5' decay of an mRNA. The association 
of DcpS with 3' to 5' exonuclease exosome components suggests 
that these two activities are linked and there is a coupled 
exonucleolytic decay-dependent decapping pathway. The C-terminal 
domain contains a histidine triad (HIT) sequence with 
three histidines separated by hydrophobic residues. The central 
histidine within the DcpS HIT motif is critical for decapping 
activity and defines the HIT motif as a new mRNA decapping 
domain, making DcpS the first member of the HIT family 
of proteins with a defined biological function.
Length=114

 Score = 88.0 bits (219),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 30/98 (31%), Positives = 52/98 (53%), Gaps = 11/98 (11%)

Query  149  NWVFNILEGRTEQEDVILRDAGEGPDDGFLMLPDLNWDRKTMSSLHLLALVQRRDIWSLR  208
             WVF I+    E E V+  D      +GF++  D+   +   + LHLL +  +R I SLR
Sbjct  1    KWVFCIIAKGEEPERVVYED------EGFVVFKDIK-PK---APLHLLVIP-KRHIKSLR  49

Query  209  DLKKKHIRWLRYLRQRLLEGTVKMYPELEQDQLKLYVH  246
            DL  +H+  L ++R+   +   + Y  +++D+L+L  H
Sbjct  50   DLTPEHLPLLEHMREVAKKVIEEKYIGVDRDELRLGFH  87



Lambda      K        H        a         alpha
   0.322    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00011154

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463415 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-t...  88.0    4e-24


>CDD:463415 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding. 
 This family consists of several scavenger mRNA decapping 
enzymes (DcpS) and is the C-terminal region. DcpS is a scavenger 
pyrophosphatase that hydrolyzes the residual cap structure 
following 3' to 5' decay of an mRNA. The association 
of DcpS with 3' to 5' exonuclease exosome components suggests 
that these two activities are linked and there is a coupled 
exonucleolytic decay-dependent decapping pathway. The C-terminal 
domain contains a histidine triad (HIT) sequence with 
three histidines separated by hydrophobic residues. The central 
histidine within the DcpS HIT motif is critical for decapping 
activity and defines the HIT motif as a new mRNA decapping 
domain, making DcpS the first member of the HIT family 
of proteins with a defined biological function.
Length=114

 Score = 88.0 bits (219),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 30/98 (31%), Positives = 52/98 (53%), Gaps = 11/98 (11%)

Query  27   NWVFNILEGRTEQEDVILRDAGEGPDDGFLMLPDLNWDRKTMSSLHLLALVQRRDIWSLR  86
             WVF I+    E E V+  D      +GF++  D+   +   + LHLL +  +R I SLR
Sbjct  1    KWVFCIIAKGEEPERVVYED------EGFVVFKDIK-PK---APLHLLVIP-KRHIKSLR  49

Query  87   DLKKKHIRWLRYLRQRLLEGTVKMYPELEQDQLKLYVH  124
            DL  +H+  L ++R+   +   + Y  +++D+L+L  H
Sbjct  50   DLTPEHLPLLEHMREVAKKVIEEKYIGVDRDELRLGFH  87



Lambda      K        H        a         alpha
   0.324    0.141    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00017548

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461705 pfam05652, DcpS, Scavenger mRNA decapping enzyme (DcpS...  159     5e-50
CDD:463415 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-t...  122     4e-35


>CDD:461705 pfam05652, DcpS, Scavenger mRNA decapping enzyme (DcpS) N-terminal. 
 This family consists of several scavenger mRNA decapping 
enzymes (DcpS) and is the N-terminal domain of these proteins. 
DcpS is a scavenger pyrophosphatase that hydrolyzes 
the residual cap structure following 3' to 5' decay of an mRNA. 
The association of DcpS with 3' to 5' exonuclease exosome 
components suggests that these two activities are linked and 
there is a coupled exonucleolytic decay-dependent decapping 
pathway.
Length=103

 Score = 159 bits (406),  Expect = 5e-50, Method: Composition-based stats.
 Identities = 52/106 (49%), Positives = 69/106 (65%), Gaps = 3/106 (3%)

Query  14   ALIPKFEVNRLLKQDQNGRRIAILGYIDGKQGILIAERAAFATESLEVLKAFHAAISSVD  73
            AL+PKF+  R+L QD   +RI++LG ID +  ILI E+ AF T+    L +F + +  + 
Sbjct  1    ALLPKFKFERVLNQDPQTKRISLLGTIDDQPAILILEKTAFPTDE-VYLYSFPSLLQELK  59

Query  74   NLGDNDIYRWYLANTGAGQGGQQFHDLKLNLIWPCTEKHIKKYSDQ  119
            NLG NDIY WYLA     Q  ++  DLK+NLI+P TE HIKKYS Q
Sbjct  60   NLGANDIYHWYLAWL--SQDLEELPDLKINLIYPATETHIKKYSKQ  103


>CDD:463415 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding. 
 This family consists of several scavenger mRNA decapping 
enzymes (DcpS) and is the C-terminal region. DcpS is a scavenger 
pyrophosphatase that hydrolyzes the residual cap structure 
following 3' to 5' decay of an mRNA. The association 
of DcpS with 3' to 5' exonuclease exosome components suggests 
that these two activities are linked and there is a coupled 
exonucleolytic decay-dependent decapping pathway. The C-terminal 
domain contains a histidine triad (HIT) sequence with 
three histidines separated by hydrophobic residues. The central 
histidine within the DcpS HIT motif is critical for decapping 
activity and defines the HIT motif as a new mRNA decapping 
domain, making DcpS the first member of the HIT family 
of proteins with a defined biological function.
Length=114

 Score = 122 bits (308),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 65/117 (56%), Gaps = 11/117 (9%)

Query  149  NWVFNILEGRTEQEDVILRDAGEGPDDGFLMLPDLNWDRKTMSSLHLLALVQRRDIWSLR  208
             WVF I+    E E V+  D      +GF++  D+   +   + LHLL +  +R I SLR
Sbjct  1    KWVFCIIAKGEEPERVVYED------EGFVVFKDIK-PK---APLHLLVIP-KRHIKSLR  49

Query  209  DLKKKHIRWLRYLRQRLLEGTVKMYPELEQDQLKLYVHYQPTYYHFHIHVVNVMLEA  265
            DL  +H+  L ++R+   +   + Y  +++D+L+L  HY P+ YH H+HV++   E+
Sbjct  50   DLTPEHLPLLEHMREVAKKVIEEKYIGVDRDELRLGFHYPPSVYHLHLHVISPDFES  106



Lambda      K        H        a         alpha
   0.320    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00011155

Length=169
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400782 pfam08615, RNase_H2_suC, Ribonuclease H2 non-catalytic...  90.5    2e-24


>CDD:400782 pfam08615, RNase_H2_suC, Ribonuclease H2 non-catalytic subunit 
(Ylr154p-like).  This entry represents the non-catalytic subunit 
of RNase H2, which in S. cerevisiae is Ylr154p/Rnh203p. 
Whereas bacterial and archaeal RNases H2 are active as single 
polypeptides, the Saccharomyces cerevisiae homolog, Rnh2Ap, 
when expressed in Escherichia coli, fails to produce an 
active RNase H2. For RNase H2 activity three proteins are required 
[Rnh2Ap (Rnh201p), Ydr279p (Rnh202p) and Ylr154p (Rnh203p)]. 
Deletion of any one of the proteins or mutations in 
the catalytic site in Rnh2A leads to loss of RNase H2 activity. 
RNase H2 ia an endonuclease that specifically degrades 
the RNA of RNA:DNA hybrids. It participates in DNA replication, 
possibly by mediating the removal of lagging-strand Okazaki 
fragment RNA primers during DNA replication.
Length=133

 Score = 90.5 bits (225),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 61/134 (46%), Gaps = 35/134 (26%)

Query  25   PNILPCRIHHDGFVESLEHYWNPVSDE-----------------------------KGIV  55
             ++LPC I H+G   + + ++ P  +                              +G V
Sbjct  2    VHLLPCHIKHNGPANT-DRFFTPYINTVRDDGKEVLRAYFRGRKLIGREVNLPPGYRGFV  60

Query  56   VQHTERILPP-KRRATGDETENQM---EQEGPVKVLEQQATFDEFVVWGHEELPAADDAF  111
               T +I    K  A  DE E +    E +  VK +E  A+FD F VWGH+ LP   D+F
Sbjct  61   ASTTNKISHTGKGDAAEDEDEEEPEPEEVDVDVK-IEPTASFDSFTVWGHDGLPDGSDSF  119

Query  112  VKGVEEWLKMAEAV  125
            V+GVEEWL +AEA+
Sbjct  120  VRGVEEWLGLAEAI  133



Lambda      K        H        a         alpha
   0.316    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00017549

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461705 pfam05652, DcpS, Scavenger mRNA decapping enzyme (DcpS...  159     5e-50
CDD:463415 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-t...  122     4e-35


>CDD:461705 pfam05652, DcpS, Scavenger mRNA decapping enzyme (DcpS) N-terminal. 
 This family consists of several scavenger mRNA decapping 
enzymes (DcpS) and is the N-terminal domain of these proteins. 
DcpS is a scavenger pyrophosphatase that hydrolyzes 
the residual cap structure following 3' to 5' decay of an mRNA. 
The association of DcpS with 3' to 5' exonuclease exosome 
components suggests that these two activities are linked and 
there is a coupled exonucleolytic decay-dependent decapping 
pathway.
Length=103

 Score = 159 bits (406),  Expect = 5e-50, Method: Composition-based stats.
 Identities = 52/106 (49%), Positives = 69/106 (65%), Gaps = 3/106 (3%)

Query  14   ALIPKFEVNRLLKQDQNGRRIAILGYIDGKQGILIAERAAFATESLEVLKAFHAAISSVD  73
            AL+PKF+  R+L QD   +RI++LG ID +  ILI E+ AF T+    L +F + +  + 
Sbjct  1    ALLPKFKFERVLNQDPQTKRISLLGTIDDQPAILILEKTAFPTDE-VYLYSFPSLLQELK  59

Query  74   NLGDNDIYRWYLANTGAGQGGQQFHDLKLNLIWPCTEKHIKKYSDQ  119
            NLG NDIY WYLA     Q  ++  DLK+NLI+P TE HIKKYS Q
Sbjct  60   NLGANDIYHWYLAWL--SQDLEELPDLKINLIYPATETHIKKYSKQ  103


>CDD:463415 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding. 
 This family consists of several scavenger mRNA decapping 
enzymes (DcpS) and is the C-terminal region. DcpS is a scavenger 
pyrophosphatase that hydrolyzes the residual cap structure 
following 3' to 5' decay of an mRNA. The association 
of DcpS with 3' to 5' exonuclease exosome components suggests 
that these two activities are linked and there is a coupled 
exonucleolytic decay-dependent decapping pathway. The C-terminal 
domain contains a histidine triad (HIT) sequence with 
three histidines separated by hydrophobic residues. The central 
histidine within the DcpS HIT motif is critical for decapping 
activity and defines the HIT motif as a new mRNA decapping 
domain, making DcpS the first member of the HIT family 
of proteins with a defined biological function.
Length=114

 Score = 122 bits (308),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 65/117 (56%), Gaps = 11/117 (9%)

Query  149  NWVFNILEGRTEQEDVILRDAGEGPDDGFLMLPDLNWDRKTMSSLHLLALVQRRDIWSLR  208
             WVF I+    E E V+  D      +GF++  D+   +   + LHLL +  +R I SLR
Sbjct  1    KWVFCIIAKGEEPERVVYED------EGFVVFKDIK-PK---APLHLLVIP-KRHIKSLR  49

Query  209  DLKKKHIRWLRYLRQRLLEGTVKMYPELEQDQLKLYVHYQPTYYHFHIHVVNVMLEA  265
            DL  +H+  L ++R+   +   + Y  +++D+L+L  HY P+ YH H+HV++   E+
Sbjct  50   DLTPEHLPLLEHMREVAKKVIEEKYIGVDRDELRLGFHYPPSVYHLHLHVISPDFES  106



Lambda      K        H        a         alpha
   0.320    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00017550

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  252     4e-86


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 252 bits (647),  Expect = 4e-86, Method: Composition-based stats.
 Identities = 92/204 (45%), Positives = 123/204 (60%), Gaps = 8/204 (4%)

Query  15   VPLENNPEVMSHLVHQLGLPPTLGFTDVYSIDEPDLLALVPRPSHALLLVFPITPSYEAS  74
            +PLE+NPEV + L+H+LG+   L F DVYS+D+ +LLA++PRP +AL+ +FPIT +YE  
Sbjct  1    IPLESNPEVFTELLHKLGVSGVLQFEDVYSLDDEELLAMLPRPVYALIFLFPITEAYEEK  60

Query  75   RVAEDGPLPEYNGSGPGEPVMWFKQTIRNACGLIGLLHAVANGEPRKHVIPGSDLDALLR  134
            R  E   + +      GE V + KQTI NACG I LLHA+ N  P   +  GS L     
Sbjct  61   REEEGEEIKD-----EGENVFFAKQTIGNACGTIALLHALLNN-PDIPLDLGSTLKKFKE  114

Query  135  EAEPLGPIARADLLYESKALESAHADAARLGDTAAPQAEDNVDLHFVAFVKGSDGRLWEL  194
              + L P  R + L  S+ L  AH   AR G T AP  +D+VD HF+AFV   DG L+EL
Sbjct  115  FTKGLSPEERGEALENSEELREAHNSFARQGQTEAPSDDDDVDFHFIAFVP-VDGHLYEL  173

Query  195  DGRRKGPLERGRLADNEDALSDKA  218
            DG + GP++ G  +D ED L D  
Sbjct  174  DGLKPGPIDHGPCSD-EDWLLDAV  196



Lambda      K        H        a         alpha
   0.317    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00017551

Length=974


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1243139128


Query= TCONS_00011156

Length=974


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1243139128


Query= TCONS_00011157

Length=974


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1243139128


Query= TCONS_00017552

Length=974


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1243139128


Query= TCONS_00011158

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00011159

Length=746
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461734 pfam05764, YL1, YL1 nuclear protein. The proteins in t...  191     2e-56
CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domai...  57.4    1e-11


>CDD:461734 pfam05764, YL1, YL1 nuclear protein.  The proteins in this family 
are designated YL1. These proteins have been shown to be 
DNA-binding and may be a transcription factor.
Length=245

 Score = 191 bits (487),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 122/250 (49%), Positives = 157/250 (63%), Gaps = 14/250 (6%)

Query  21   RARRSTAGRHLSALLNAEA-DDELALLFEEVDDDNEFSIDAEEEAEEDDMALDSSSDDDE  79
            RARRSTAG  +  LL  E  DDEL LLF E +DD EF  + EEE E D     S  D+D 
Sbjct  1    RARRSTAGNRMKKLLEQELEDDELELLFAEEEDDEEFESEEEEEDESDSDFDSSEDDEDS  60

Query  80   DQGPNARSDDLEGEKEIEKEAKADRQ-----KRRAREDLRLKLARKKVKIDPSAVSAVSA  134
            ++      DD EGEKE++++ +  R+     K+R  ++  LKL +K              
Sbjct  61   EEE----EDDDEGEKELQRQERKKRRSKKEKKKRKAQEAILKLFKKAAIKRKKVKIDKPR  116

Query  135  -VPAPRPKKKSERISWLPTVEDGPT-RSSSRRQTMQNKQLTHARLKDSEEKRIRLIATME  192
              PAPRPKKKSER SWLPT EDGPT R SSR  T+QNK+ TH RLK++EE+R + +A M+
Sbjct  117  KAPAPRPKKKSERASWLPTEEDGPTRRKSSRSSTVQNKEATHERLKEAEERRKKQLARMK  176

Query  193  EAAKRKAHLKP-KEMTQADRLAEAERVERLNSKSLSRWEEMEKRKAEERRAKIEALQNRR  251
            + A RK   K  K +TQ +RLAEA   E +N KSL+RWEE E+ K +E+RAK+ AL+ R+
Sbjct  177  KKAARKKKKKEEKPLTQEERLAEAAETEEINLKSLNRWEEQEEEKKKEQRAKLAALKRRK  236

Query  252  LEGPVISYWS  261
            L GPVI YWS
Sbjct  237  L-GPVIRYWS  245


>CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domain.  This 
domain is found in proteins of the YL1 family. These proteins 
have been shown to be DNA-binding and may be a transcription 
factor. This domain is found in proteins that are not YL1 
proteins.
Length=29

 Score = 57.4 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 17/29 (59%), Positives = 22/29 (76%), Gaps = 0/29 (0%)

Query  616  LCVITSLPSRYRDPETSLPFANAYAYREI  644
             C IT LP++YRDP+T LP+AN  AY+ I
Sbjct  1    YCDITGLPAKYRDPKTGLPYANVEAYKVI  29



Lambda      K        H        a         alpha
   0.302    0.120    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 948759104


Query= TCONS_00011160

Length=746
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461734 pfam05764, YL1, YL1 nuclear protein. The proteins in t...  191     2e-56
CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domai...  57.4    1e-11


>CDD:461734 pfam05764, YL1, YL1 nuclear protein.  The proteins in this family 
are designated YL1. These proteins have been shown to be 
DNA-binding and may be a transcription factor.
Length=245

 Score = 191 bits (487),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 122/250 (49%), Positives = 157/250 (63%), Gaps = 14/250 (6%)

Query  21   RARRSTAGRHLSALLNAEA-DDELALLFEEVDDDNEFSIDAEEEAEEDDMALDSSSDDDE  79
            RARRSTAG  +  LL  E  DDEL LLF E +DD EF  + EEE E D     S  D+D 
Sbjct  1    RARRSTAGNRMKKLLEQELEDDELELLFAEEEDDEEFESEEEEEDESDSDFDSSEDDEDS  60

Query  80   DQGPNARSDDLEGEKEIEKEAKADRQ-----KRRAREDLRLKLARKKVKIDPSAVSAVSA  134
            ++      DD EGEKE++++ +  R+     K+R  ++  LKL +K              
Sbjct  61   EEE----EDDDEGEKELQRQERKKRRSKKEKKKRKAQEAILKLFKKAAIKRKKVKIDKPR  116

Query  135  -VPAPRPKKKSERISWLPTVEDGPT-RSSSRRQTMQNKQLTHARLKDSEEKRIRLIATME  192
              PAPRPKKKSER SWLPT EDGPT R SSR  T+QNK+ TH RLK++EE+R + +A M+
Sbjct  117  KAPAPRPKKKSERASWLPTEEDGPTRRKSSRSSTVQNKEATHERLKEAEERRKKQLARMK  176

Query  193  EAAKRKAHLKP-KEMTQADRLAEAERVERLNSKSLSRWEEMEKRKAEERRAKIEALQNRR  251
            + A RK   K  K +TQ +RLAEA   E +N KSL+RWEE E+ K +E+RAK+ AL+ R+
Sbjct  177  KKAARKKKKKEEKPLTQEERLAEAAETEEINLKSLNRWEEQEEEKKKEQRAKLAALKRRK  236

Query  252  LEGPVISYWS  261
            L GPVI YWS
Sbjct  237  L-GPVIRYWS  245


>CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domain.  This 
domain is found in proteins of the YL1 family. These proteins 
have been shown to be DNA-binding and may be a transcription 
factor. This domain is found in proteins that are not YL1 
proteins.
Length=29

 Score = 57.4 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 17/29 (59%), Positives = 22/29 (76%), Gaps = 0/29 (0%)

Query  616  LCVITSLPSRYRDPETSLPFANAYAYREI  644
             C IT LP++YRDP+T LP+AN  AY+ I
Sbjct  1    YCDITGLPAKYRDPKTGLPYANVEAYKVI  29



Lambda      K        H        a         alpha
   0.302    0.120    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0798    0.140     1.90     42.6     43.6 

Effective search space used: 948759104


Query= TCONS_00017553

Length=746
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461734 pfam05764, YL1, YL1 nuclear protein. The proteins in t...  191     2e-56
CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domai...  57.4    1e-11


>CDD:461734 pfam05764, YL1, YL1 nuclear protein.  The proteins in this family 
are designated YL1. These proteins have been shown to be 
DNA-binding and may be a transcription factor.
Length=245

 Score = 191 bits (487),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 122/250 (49%), Positives = 157/250 (63%), Gaps = 14/250 (6%)

Query  21   RARRSTAGRHLSALLNAEA-DDELALLFEEVDDDNEFSIDAEEEAEEDDMALDSSSDDDE  79
            RARRSTAG  +  LL  E  DDEL LLF E +DD EF  + EEE E D     S  D+D 
Sbjct  1    RARRSTAGNRMKKLLEQELEDDELELLFAEEEDDEEFESEEEEEDESDSDFDSSEDDEDS  60

Query  80   DQGPNARSDDLEGEKEIEKEAKADRQ-----KRRAREDLRLKLARKKVKIDPSAVSAVSA  134
            ++      DD EGEKE++++ +  R+     K+R  ++  LKL +K              
Sbjct  61   EEE----EDDDEGEKELQRQERKKRRSKKEKKKRKAQEAILKLFKKAAIKRKKVKIDKPR  116

Query  135  -VPAPRPKKKSERISWLPTVEDGPT-RSSSRRQTMQNKQLTHARLKDSEEKRIRLIATME  192
              PAPRPKKKSER SWLPT EDGPT R SSR  T+QNK+ TH RLK++EE+R + +A M+
Sbjct  117  KAPAPRPKKKSERASWLPTEEDGPTRRKSSRSSTVQNKEATHERLKEAEERRKKQLARMK  176

Query  193  EAAKRKAHLKP-KEMTQADRLAEAERVERLNSKSLSRWEEMEKRKAEERRAKIEALQNRR  251
            + A RK   K  K +TQ +RLAEA   E +N KSL+RWEE E+ K +E+RAK+ AL+ R+
Sbjct  177  KKAARKKKKKEEKPLTQEERLAEAAETEEINLKSLNRWEEQEEEKKKEQRAKLAALKRRK  236

Query  252  LEGPVISYWS  261
            L GPVI YWS
Sbjct  237  L-GPVIRYWS  245


>CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domain.  This 
domain is found in proteins of the YL1 family. These proteins 
have been shown to be DNA-binding and may be a transcription 
factor. This domain is found in proteins that are not YL1 
proteins.
Length=29

 Score = 57.4 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 17/29 (59%), Positives = 22/29 (76%), Gaps = 0/29 (0%)

Query  616  LCVITSLPSRYRDPETSLPFANAYAYREI  644
             C IT LP++YRDP+T LP+AN  AY+ I
Sbjct  1    YCDITGLPAKYRDPKTGLPYANVEAYKVI  29



Lambda      K        H        a         alpha
   0.302    0.120    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 948759104


Query= TCONS_00017554

Length=746
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461734 pfam05764, YL1, YL1 nuclear protein. The proteins in t...  191     2e-56
CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domai...  57.4    1e-11


>CDD:461734 pfam05764, YL1, YL1 nuclear protein.  The proteins in this family 
are designated YL1. These proteins have been shown to be 
DNA-binding and may be a transcription factor.
Length=245

 Score = 191 bits (487),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 122/250 (49%), Positives = 157/250 (63%), Gaps = 14/250 (6%)

Query  21   RARRSTAGRHLSALLNAEA-DDELALLFEEVDDDNEFSIDAEEEAEEDDMALDSSSDDDE  79
            RARRSTAG  +  LL  E  DDEL LLF E +DD EF  + EEE E D     S  D+D 
Sbjct  1    RARRSTAGNRMKKLLEQELEDDELELLFAEEEDDEEFESEEEEEDESDSDFDSSEDDEDS  60

Query  80   DQGPNARSDDLEGEKEIEKEAKADRQ-----KRRAREDLRLKLARKKVKIDPSAVSAVSA  134
            ++      DD EGEKE++++ +  R+     K+R  ++  LKL +K              
Sbjct  61   EEE----EDDDEGEKELQRQERKKRRSKKEKKKRKAQEAILKLFKKAAIKRKKVKIDKPR  116

Query  135  -VPAPRPKKKSERISWLPTVEDGPT-RSSSRRQTMQNKQLTHARLKDSEEKRIRLIATME  192
              PAPRPKKKSER SWLPT EDGPT R SSR  T+QNK+ TH RLK++EE+R + +A M+
Sbjct  117  KAPAPRPKKKSERASWLPTEEDGPTRRKSSRSSTVQNKEATHERLKEAEERRKKQLARMK  176

Query  193  EAAKRKAHLKP-KEMTQADRLAEAERVERLNSKSLSRWEEMEKRKAEERRAKIEALQNRR  251
            + A RK   K  K +TQ +RLAEA   E +N KSL+RWEE E+ K +E+RAK+ AL+ R+
Sbjct  177  KKAARKKKKKEEKPLTQEERLAEAAETEEINLKSLNRWEEQEEEKKKEQRAKLAALKRRK  236

Query  252  LEGPVISYWS  261
            L GPVI YWS
Sbjct  237  L-GPVIRYWS  245


>CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domain.  This 
domain is found in proteins of the YL1 family. These proteins 
have been shown to be DNA-binding and may be a transcription 
factor. This domain is found in proteins that are not YL1 
proteins.
Length=29

 Score = 57.4 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 17/29 (59%), Positives = 22/29 (76%), Gaps = 0/29 (0%)

Query  616  LCVITSLPSRYRDPETSLPFANAYAYREI  644
             C IT LP++YRDP+T LP+AN  AY+ I
Sbjct  1    YCDITGLPAKYRDPKTGLPYANVEAYKVI  29



Lambda      K        H        a         alpha
   0.302    0.120    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 948759104


Query= TCONS_00017555

Length=746
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461734 pfam05764, YL1, YL1 nuclear protein. The proteins in t...  191     2e-56
CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domai...  57.4    1e-11


>CDD:461734 pfam05764, YL1, YL1 nuclear protein.  The proteins in this family 
are designated YL1. These proteins have been shown to be 
DNA-binding and may be a transcription factor.
Length=245

 Score = 191 bits (487),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 122/250 (49%), Positives = 157/250 (63%), Gaps = 14/250 (6%)

Query  21   RARRSTAGRHLSALLNAEA-DDELALLFEEVDDDNEFSIDAEEEAEEDDMALDSSSDDDE  79
            RARRSTAG  +  LL  E  DDEL LLF E +DD EF  + EEE E D     S  D+D 
Sbjct  1    RARRSTAGNRMKKLLEQELEDDELELLFAEEEDDEEFESEEEEEDESDSDFDSSEDDEDS  60

Query  80   DQGPNARSDDLEGEKEIEKEAKADRQ-----KRRAREDLRLKLARKKVKIDPSAVSAVSA  134
            ++      DD EGEKE++++ +  R+     K+R  ++  LKL +K              
Sbjct  61   EEE----EDDDEGEKELQRQERKKRRSKKEKKKRKAQEAILKLFKKAAIKRKKVKIDKPR  116

Query  135  -VPAPRPKKKSERISWLPTVEDGPT-RSSSRRQTMQNKQLTHARLKDSEEKRIRLIATME  192
              PAPRPKKKSER SWLPT EDGPT R SSR  T+QNK+ TH RLK++EE+R + +A M+
Sbjct  117  KAPAPRPKKKSERASWLPTEEDGPTRRKSSRSSTVQNKEATHERLKEAEERRKKQLARMK  176

Query  193  EAAKRKAHLKP-KEMTQADRLAEAERVERLNSKSLSRWEEMEKRKAEERRAKIEALQNRR  251
            + A RK   K  K +TQ +RLAEA   E +N KSL+RWEE E+ K +E+RAK+ AL+ R+
Sbjct  177  KKAARKKKKKEEKPLTQEERLAEAAETEEINLKSLNRWEEQEEEKKKEQRAKLAALKRRK  236

Query  252  LEGPVISYWS  261
            L GPVI YWS
Sbjct  237  L-GPVIRYWS  245


>CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domain.  This 
domain is found in proteins of the YL1 family. These proteins 
have been shown to be DNA-binding and may be a transcription 
factor. This domain is found in proteins that are not YL1 
proteins.
Length=29

 Score = 57.4 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 17/29 (59%), Positives = 22/29 (76%), Gaps = 0/29 (0%)

Query  616  LCVITSLPSRYRDPETSLPFANAYAYREI  644
             C IT LP++YRDP+T LP+AN  AY+ I
Sbjct  1    YCDITGLPAKYRDPKTGLPYANVEAYKVI  29



Lambda      K        H        a         alpha
   0.302    0.120    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 948759104


Query= TCONS_00011161

Length=746
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461734 pfam05764, YL1, YL1 nuclear protein. The proteins in t...  191     2e-56
CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domai...  57.4    1e-11


>CDD:461734 pfam05764, YL1, YL1 nuclear protein.  The proteins in this family 
are designated YL1. These proteins have been shown to be 
DNA-binding and may be a transcription factor.
Length=245

 Score = 191 bits (487),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 122/250 (49%), Positives = 157/250 (63%), Gaps = 14/250 (6%)

Query  21   RARRSTAGRHLSALLNAEA-DDELALLFEEVDDDNEFSIDAEEEAEEDDMALDSSSDDDE  79
            RARRSTAG  +  LL  E  DDEL LLF E +DD EF  + EEE E D     S  D+D 
Sbjct  1    RARRSTAGNRMKKLLEQELEDDELELLFAEEEDDEEFESEEEEEDESDSDFDSSEDDEDS  60

Query  80   DQGPNARSDDLEGEKEIEKEAKADRQ-----KRRAREDLRLKLARKKVKIDPSAVSAVSA  134
            ++      DD EGEKE++++ +  R+     K+R  ++  LKL +K              
Sbjct  61   EEE----EDDDEGEKELQRQERKKRRSKKEKKKRKAQEAILKLFKKAAIKRKKVKIDKPR  116

Query  135  -VPAPRPKKKSERISWLPTVEDGPT-RSSSRRQTMQNKQLTHARLKDSEEKRIRLIATME  192
              PAPRPKKKSER SWLPT EDGPT R SSR  T+QNK+ TH RLK++EE+R + +A M+
Sbjct  117  KAPAPRPKKKSERASWLPTEEDGPTRRKSSRSSTVQNKEATHERLKEAEERRKKQLARMK  176

Query  193  EAAKRKAHLKP-KEMTQADRLAEAERVERLNSKSLSRWEEMEKRKAEERRAKIEALQNRR  251
            + A RK   K  K +TQ +RLAEA   E +N KSL+RWEE E+ K +E+RAK+ AL+ R+
Sbjct  177  KKAARKKKKKEEKPLTQEERLAEAAETEEINLKSLNRWEEQEEEKKKEQRAKLAALKRRK  236

Query  252  LEGPVISYWS  261
            L GPVI YWS
Sbjct  237  L-GPVIRYWS  245


>CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domain.  This 
domain is found in proteins of the YL1 family. These proteins 
have been shown to be DNA-binding and may be a transcription 
factor. This domain is found in proteins that are not YL1 
proteins.
Length=29

 Score = 57.4 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 17/29 (59%), Positives = 22/29 (76%), Gaps = 0/29 (0%)

Query  616  LCVITSLPSRYRDPETSLPFANAYAYREI  644
             C IT LP++YRDP+T LP+AN  AY+ I
Sbjct  1    YCDITGLPAKYRDPKTGLPYANVEAYKVI  29



Lambda      K        H        a         alpha
   0.302    0.120    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 948759104


Query= TCONS_00011162

Length=746
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461734 pfam05764, YL1, YL1 nuclear protein. The proteins in t...  191     2e-56
CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domai...  57.4    1e-11


>CDD:461734 pfam05764, YL1, YL1 nuclear protein.  The proteins in this family 
are designated YL1. These proteins have been shown to be 
DNA-binding and may be a transcription factor.
Length=245

 Score = 191 bits (487),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 122/250 (49%), Positives = 157/250 (63%), Gaps = 14/250 (6%)

Query  21   RARRSTAGRHLSALLNAEA-DDELALLFEEVDDDNEFSIDAEEEAEEDDMALDSSSDDDE  79
            RARRSTAG  +  LL  E  DDEL LLF E +DD EF  + EEE E D     S  D+D 
Sbjct  1    RARRSTAGNRMKKLLEQELEDDELELLFAEEEDDEEFESEEEEEDESDSDFDSSEDDEDS  60

Query  80   DQGPNARSDDLEGEKEIEKEAKADRQ-----KRRAREDLRLKLARKKVKIDPSAVSAVSA  134
            ++      DD EGEKE++++ +  R+     K+R  ++  LKL +K              
Sbjct  61   EEE----EDDDEGEKELQRQERKKRRSKKEKKKRKAQEAILKLFKKAAIKRKKVKIDKPR  116

Query  135  -VPAPRPKKKSERISWLPTVEDGPT-RSSSRRQTMQNKQLTHARLKDSEEKRIRLIATME  192
              PAPRPKKKSER SWLPT EDGPT R SSR  T+QNK+ TH RLK++EE+R + +A M+
Sbjct  117  KAPAPRPKKKSERASWLPTEEDGPTRRKSSRSSTVQNKEATHERLKEAEERRKKQLARMK  176

Query  193  EAAKRKAHLKP-KEMTQADRLAEAERVERLNSKSLSRWEEMEKRKAEERRAKIEALQNRR  251
            + A RK   K  K +TQ +RLAEA   E +N KSL+RWEE E+ K +E+RAK+ AL+ R+
Sbjct  177  KKAARKKKKKEEKPLTQEERLAEAAETEEINLKSLNRWEEQEEEKKKEQRAKLAALKRRK  236

Query  252  LEGPVISYWS  261
            L GPVI YWS
Sbjct  237  L-GPVIRYWS  245


>CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domain.  This 
domain is found in proteins of the YL1 family. These proteins 
have been shown to be DNA-binding and may be a transcription 
factor. This domain is found in proteins that are not YL1 
proteins.
Length=29

 Score = 57.4 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 17/29 (59%), Positives = 22/29 (76%), Gaps = 0/29 (0%)

Query  616  LCVITSLPSRYRDPETSLPFANAYAYREI  644
             C IT LP++YRDP+T LP+AN  AY+ I
Sbjct  1    YCDITGLPAKYRDPKTGLPYANVEAYKVI  29



Lambda      K        H        a         alpha
   0.302    0.120    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 948759104


Query= TCONS_00011163

Length=622
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461734 pfam05764, YL1, YL1 nuclear protein. The proteins in t...  182     6e-54


>CDD:461734 pfam05764, YL1, YL1 nuclear protein.  The proteins in this family 
are designated YL1. These proteins have been shown to be 
DNA-binding and may be a transcription factor.
Length=245

 Score = 182 bits (464),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 122/250 (49%), Positives = 157/250 (63%), Gaps = 14/250 (6%)

Query  21   RARRSTAGRHLSALLNAEA-DDELALLFEEVDDDNEFSIDAEEEAEEDDMALDSSSDDDE  79
            RARRSTAG  +  LL  E  DDEL LLF E +DD EF  + EEE E D     S  D+D 
Sbjct  1    RARRSTAGNRMKKLLEQELEDDELELLFAEEEDDEEFESEEEEEDESDSDFDSSEDDEDS  60

Query  80   DQGPNARSDDLEGEKEIEKEAKADRQ-----KRRAREDLRLKLARKKVKIDPSAVSAVSA  134
            ++      DD EGEKE++++ +  R+     K+R  ++  LKL +K              
Sbjct  61   EEE----EDDDEGEKELQRQERKKRRSKKEKKKRKAQEAILKLFKKAAIKRKKVKIDKPR  116

Query  135  -VPAPRPKKKSERISWLPTVEDGPT-RSSSRRQTMQNKQLTHARLKDSEEKRIRLIATME  192
              PAPRPKKKSER SWLPT EDGPT R SSR  T+QNK+ TH RLK++EE+R + +A M+
Sbjct  117  KAPAPRPKKKSERASWLPTEEDGPTRRKSSRSSTVQNKEATHERLKEAEERRKKQLARMK  176

Query  193  EAAKRKAHLKP-KEMTQADRLAEAERVERLNSKSLSRWEEMEKRKAEERRAKIEALQNRR  251
            + A RK   K  K +TQ +RLAEA   E +N KSL+RWEE E+ K +E+RAK+ AL+ R+
Sbjct  177  KKAARKKKKKEEKPLTQEERLAEAAETEEINLKSLNRWEEQEEEKKKEQRAKLAALKRRK  236

Query  252  LEGPVISYWS  261
            L GPVI YWS
Sbjct  237  L-GPVIRYWS  245



Lambda      K        H        a         alpha
   0.301    0.118    0.316    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 792046840


Query= TCONS_00011164

Length=746
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461734 pfam05764, YL1, YL1 nuclear protein. The proteins in t...  191     2e-56
CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domai...  57.4    1e-11


>CDD:461734 pfam05764, YL1, YL1 nuclear protein.  The proteins in this family 
are designated YL1. These proteins have been shown to be 
DNA-binding and may be a transcription factor.
Length=245

 Score = 191 bits (487),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 122/250 (49%), Positives = 157/250 (63%), Gaps = 14/250 (6%)

Query  21   RARRSTAGRHLSALLNAEA-DDELALLFEEVDDDNEFSIDAEEEAEEDDMALDSSSDDDE  79
            RARRSTAG  +  LL  E  DDEL LLF E +DD EF  + EEE E D     S  D+D 
Sbjct  1    RARRSTAGNRMKKLLEQELEDDELELLFAEEEDDEEFESEEEEEDESDSDFDSSEDDEDS  60

Query  80   DQGPNARSDDLEGEKEIEKEAKADRQ-----KRRAREDLRLKLARKKVKIDPSAVSAVSA  134
            ++      DD EGEKE++++ +  R+     K+R  ++  LKL +K              
Sbjct  61   EEE----EDDDEGEKELQRQERKKRRSKKEKKKRKAQEAILKLFKKAAIKRKKVKIDKPR  116

Query  135  -VPAPRPKKKSERISWLPTVEDGPT-RSSSRRQTMQNKQLTHARLKDSEEKRIRLIATME  192
              PAPRPKKKSER SWLPT EDGPT R SSR  T+QNK+ TH RLK++EE+R + +A M+
Sbjct  117  KAPAPRPKKKSERASWLPTEEDGPTRRKSSRSSTVQNKEATHERLKEAEERRKKQLARMK  176

Query  193  EAAKRKAHLKP-KEMTQADRLAEAERVERLNSKSLSRWEEMEKRKAEERRAKIEALQNRR  251
            + A RK   K  K +TQ +RLAEA   E +N KSL+RWEE E+ K +E+RAK+ AL+ R+
Sbjct  177  KKAARKKKKKEEKPLTQEERLAEAAETEEINLKSLNRWEEQEEEKKKEQRAKLAALKRRK  236

Query  252  LEGPVISYWS  261
            L GPVI YWS
Sbjct  237  L-GPVIRYWS  245


>CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domain.  This 
domain is found in proteins of the YL1 family. These proteins 
have been shown to be DNA-binding and may be a transcription 
factor. This domain is found in proteins that are not YL1 
proteins.
Length=29

 Score = 57.4 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 17/29 (59%), Positives = 22/29 (76%), Gaps = 0/29 (0%)

Query  616  LCVITSLPSRYRDPETSLPFANAYAYREI  644
             C IT LP++YRDP+T LP+AN  AY+ I
Sbjct  1    YCDITGLPAKYRDPKTGLPYANVEAYKVI  29



Lambda      K        H        a         alpha
   0.302    0.120    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 948759104


Query= TCONS_00011165

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00017556

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432834 pfam12855, Ecl1, Life-span regulatory factor. This fam...  104     4e-28


>CDD:432834 pfam12855, Ecl1, Life-span regulatory factor.  This family is 
involved in the chronological life-span of S. cerevisiae. Over-expression 
leads to an extended viability of wild-type strains, 
indicating a role in regulation.
Length=172

 Score = 104 bits (261),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 79/214 (37%), Positives = 97/214 (45%), Gaps = 42/214 (20%)

Query  62   AASFLNFCAMCERQITVPDNSLLYCSESCRRKDSHKPLSASFPSSGSIPYLRSPPTSPLV  121
              SFL FCA CE+QI VPDNS LYCSESCRRKDS K  S+S  SS       SPP SP  
Sbjct  1    MESFLQFCATCEKQIIVPDNSSLYCSESCRRKDSEKSSSSSSSSS-------SPPLSP--  51

Query  122  SSRMIVAPMTPTKAPLKSTPTTGISTDVHDSKVDQDPSEWKPVIPAAYGSTGSLASTEAW  181
                   P  P      S P +   +   DS  D  P+EWK         + S +S+EAW
Sbjct  52   --FYSSWPSEPRDDASPSRPFSPPPSPSSDSSSDLSPTEWK---RPPSPPSPSRSSSEAW  106

Query  182  HYLSQFHGSEPLFPRRRDGAGHRSSASLSTLMSATAPVPSLTHTPSTTASSFSSTASDYI  241
             YLSQ   S              S +SLS+  S  +   S + + S +++          
Sbjct  107  PYLSQSPSS--------------SRSSLSSESSTPSLSTSSSSSASYSSAYS--------  144

Query  242  GYIPESSHRPLPPRHNPYFSNGAGVTKSVELVVP  275
                 SS RPLPPR     S      KS++LV P
Sbjct  145  ----SSSDRPLPPRPPYSSS--FSRPKSIDLVTP  172



Lambda      K        H        a         alpha
   0.312    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00011167

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432834 pfam12855, Ecl1, Life-span regulatory factor. This fam...  105     6e-28


>CDD:432834 pfam12855, Ecl1, Life-span regulatory factor.  This family is 
involved in the chronological life-span of S. cerevisiae. Over-expression 
leads to an extended viability of wild-type strains, 
indicating a role in regulation.
Length=172

 Score = 105 bits (263),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 79/214 (37%), Positives = 97/214 (45%), Gaps = 42/214 (20%)

Query  62   AASFLNFCAMCERQITVPDNSLLYCSESCRRKDSHKPLSASFPSSGSIPYLRSPPTSPLV  121
              SFL FCA CE+QI VPDNS LYCSESCRRKDS K  S+S  SS       SPP SP  
Sbjct  1    MESFLQFCATCEKQIIVPDNSSLYCSESCRRKDSEKSSSSSSSSS-------SPPLSP--  51

Query  122  SSRMIVAPMTPTKAPLKSTPTTGISTDVHDSKVDQDPSEWKPVIPAAYGSTGSLASTEAW  181
                   P  P      S P +   +   DS  D  P+EWK         + S +S+EAW
Sbjct  52   --FYSSWPSEPRDDASPSRPFSPPPSPSSDSSSDLSPTEWK---RPPSPPSPSRSSSEAW  106

Query  182  HYLSQFHGSEPLFPRRRDGAGHRSSASLSTLMSATAPVPSLTHTPSTTASSFSSTASDYI  241
             YLSQ   S              S +SLS+  S  +   S + + S +++          
Sbjct  107  PYLSQSPSS--------------SRSSLSSESSTPSLSTSSSSSASYSSAYS--------  144

Query  242  GYIPESSHRPLPPRHNPYFSNGAGVTKSVELVVP  275
                 SS RPLPPR     S      KS++LV P
Sbjct  145  ----SSSDRPLPPRPPYSSS--FSRPKSIDLVTP  172



Lambda      K        H        a         alpha
   0.310    0.124    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00017557

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432834 pfam12855, Ecl1, Life-span regulatory factor. This fam...  92.6    2e-24


>CDD:432834 pfam12855, Ecl1, Life-span regulatory factor.  This family is 
involved in the chronological life-span of S. cerevisiae. Over-expression 
leads to an extended viability of wild-type strains, 
indicating a role in regulation.
Length=172

 Score = 92.6 bits (230),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 58/129 (45%), Positives = 66/129 (51%), Gaps = 14/129 (11%)

Query  62   AASFLNFCAMCERQITVPDNSLLYCSESCRRKDSHKPLSASFPSSGSIPYLRSPPTSPLV  121
              SFL FCA CE+QI VPDNS LYCSESCRRKDS K  S+S  SS       SPP SP  
Sbjct  1    MESFLQFCATCEKQIIVPDNSSLYCSESCRRKDSEKSSSSSSSSS-------SPPLSP--  51

Query  122  SSRMIVAPMTPTKAPLKSTPTTGISTDVHDSKVDQDPSEWKPVIPAAYGSTGSLASTEAW  181
                   P  P      S P +   +   DS  D  P+EWK         + S +S+EAW
Sbjct  52   --FYSSWPSEPRDDASPSRPFSPPPSPSSDSSSDLSPTEWK---RPPSPPSPSRSSSEAW  106

Query  182  HYLSQFHGS  190
             YLSQ   S
Sbjct  107  PYLSQSPSS  115



Lambda      K        H        a         alpha
   0.313    0.127    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00017558

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432834 pfam12855, Ecl1, Life-span regulatory factor. This fam...  105     6e-28


>CDD:432834 pfam12855, Ecl1, Life-span regulatory factor.  This family is 
involved in the chronological life-span of S. cerevisiae. Over-expression 
leads to an extended viability of wild-type strains, 
indicating a role in regulation.
Length=172

 Score = 105 bits (263),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 79/214 (37%), Positives = 97/214 (45%), Gaps = 42/214 (20%)

Query  62   AASFLNFCAMCERQITVPDNSLLYCSESCRRKDSHKPLSASFPSSGSIPYLRSPPTSPLV  121
              SFL FCA CE+QI VPDNS LYCSESCRRKDS K  S+S  SS       SPP SP  
Sbjct  1    MESFLQFCATCEKQIIVPDNSSLYCSESCRRKDSEKSSSSSSSSS-------SPPLSP--  51

Query  122  SSRMIVAPMTPTKAPLKSTPTTGISTDVHDSKVDQDPSEWKPVIPAAYGSTGSLASTEAW  181
                   P  P      S P +   +   DS  D  P+EWK         + S +S+EAW
Sbjct  52   --FYSSWPSEPRDDASPSRPFSPPPSPSSDSSSDLSPTEWK---RPPSPPSPSRSSSEAW  106

Query  182  HYLSQFHGSEPLFPRRRDGAGHRSSASLSTLMSATAPVPSLTHTPSTTASSFSSTASDYI  241
             YLSQ   S              S +SLS+  S  +   S + + S +++          
Sbjct  107  PYLSQSPSS--------------SRSSLSSESSTPSLSTSSSSSASYSSAYS--------  144

Query  242  GYIPESSHRPLPPRHNPYFSNGAGVTKSVELVVP  275
                 SS RPLPPR     S      KS++LV P
Sbjct  145  ----SSSDRPLPPRPPYSSS--FSRPKSIDLVTP  172



Lambda      K        H        a         alpha
   0.310    0.124    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00011168

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432834 pfam12855, Ecl1, Life-span regulatory factor. This fam...  69.8    1e-16


>CDD:432834 pfam12855, Ecl1, Life-span regulatory factor.  This family is 
involved in the chronological life-span of S. cerevisiae. Over-expression 
leads to an extended viability of wild-type strains, 
indicating a role in regulation.
Length=172

 Score = 69.8 bits (171),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 39/63 (62%), Positives = 41/63 (65%), Gaps = 7/63 (11%)

Query  62   AASFLNFCAMCERQITVPDNSLLYCSESCRRKDSHKPLSASFPSSGSIPYLRSPPTSPLV  121
              SFL FCA CE+QI VPDNS LYCSESCRRKDS K  S+S  SS       SPP SP  
Sbjct  1    MESFLQFCATCEKQIIVPDNSSLYCSESCRRKDSEKSSSSSSSSS-------SPPLSPFY  53

Query  122  SSR  124
            SS 
Sbjct  54   SSW  56



Lambda      K        H        a         alpha
   0.315    0.127    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00011169

Length=224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432834 pfam12855, Ecl1, Life-span regulatory factor. This fam...  89.5    6e-23


>CDD:432834 pfam12855, Ecl1, Life-span regulatory factor.  This family is 
involved in the chronological life-span of S. cerevisiae. Over-expression 
leads to an extended viability of wild-type strains, 
indicating a role in regulation.
Length=172

 Score = 89.5 bits (222),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 58/129 (45%), Positives = 66/129 (51%), Gaps = 14/129 (11%)

Query  62   AASFLNFCAMCERQITVPDNSLLYCSESCRRKDSHKPLSASFPSSGSIPYLRSPPTSPLV  121
              SFL FCA CE+QI VPDNS LYCSESCRRKDS K  S+S  SS       SPP SP  
Sbjct  1    MESFLQFCATCEKQIIVPDNSSLYCSESCRRKDSEKSSSSSSSSS-------SPPLSP--  51

Query  122  SSRMIVAPMTPTKAPLKSTPTTGISTDVHDSKVDQDPSEWKPVIPAAYGSTGSLASTEAW  181
                   P  P      S P +   +   DS  D  P+EWK         + S +S+EAW
Sbjct  52   --FYSSWPSEPRDDASPSRPFSPPPSPSSDSSSDLSPTEWK---RPPSPPSPSRSSSEAW  106

Query  182  HYLSQFHGS  190
             YLSQ   S
Sbjct  107  PYLSQSPSS  115



Lambda      K        H        a         alpha
   0.312    0.126    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00017559

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432834 pfam12855, Ecl1, Life-span regulatory factor. This fam...  55.6    5e-11


>CDD:432834 pfam12855, Ecl1, Life-span regulatory factor.  This family is 
involved in the chronological life-span of S. cerevisiae. Over-expression 
leads to an extended viability of wild-type strains, 
indicating a role in regulation.
Length=172

 Score = 55.6 bits (134),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 20/27 (74%), Positives = 21/27 (78%), Gaps = 0/27 (0%)

Query  62  AASFLNFCAMCERQITVPDNSLLYCSE  88
             SFL FCA CE+QI VPDNS LYCSE
Sbjct  1   MESFLQFCATCEKQIIVPDNSSLYCSE  27



Lambda      K        H        a         alpha
   0.319    0.132    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00017560

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432834 pfam12855, Ecl1, Life-span regulatory factor. This fam...  89.1    9e-23


>CDD:432834 pfam12855, Ecl1, Life-span regulatory factor.  This family is 
involved in the chronological life-span of S. cerevisiae. Over-expression 
leads to an extended viability of wild-type strains, 
indicating a role in regulation.
Length=172

 Score = 89.1 bits (221),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 74/164 (45%), Gaps = 25/164 (15%)

Query  62   AASFLNFCAMCERQITVPDNSLLYCSESCRRKDSHKPLSASFPSSGSIPYLRSPPTSPLV  121
              SFL FCA CE+QI VPDNS LYCSESCRRKDS K  S+S  SS       SPP SP  
Sbjct  1    MESFLQFCATCEKQIIVPDNSSLYCSESCRRKDSEKSSSSSSSSS-------SPPLSP--  51

Query  122  SSRMIVAPMTPTKAPLKSTPTTGISTDVHDSKVDQDPSEWKPVIPAAYGSTGSLASTEAW  181
                   P  P      S P +   +   DS  D  P+EWK         + S +S+EAW
Sbjct  52   --FYSSWPSEPRDDASPSRPFSPPPSPSSDSSSDLSPTEWK---RPPSPPSPSRSSSEAW  106

Query  182  HYLSQFHGSEPLFPRRRDGAGHRSSASLSTLMSATAPVPSLTHT  225
             YLSQ   S              S +S S+  S +    S    
Sbjct  107  PYLSQSPSSS-----------RSSLSSESSTPSLSTSSSSSASY  139



Lambda      K        H        a         alpha
   0.312    0.126    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00017561

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432834 pfam12855, Ecl1, Life-span regulatory factor. This fam...  103     8e-28


>CDD:432834 pfam12855, Ecl1, Life-span regulatory factor.  This family is 
involved in the chronological life-span of S. cerevisiae. Over-expression 
leads to an extended viability of wild-type strains, 
indicating a role in regulation.
Length=172

 Score = 103 bits (259),  Expect = 8e-28, Method: Composition-based stats.
 Identities = 79/214 (37%), Positives = 97/214 (45%), Gaps = 42/214 (20%)

Query  62   AASFLNFCAMCERQITVPDNSLLYCSESCRRKDSHKPLSASFPSSGSIPYLRSPPTSPLV  121
              SFL FCA CE+QI VPDNS LYCSESCRRKDS K  S+S  SS       SPP SP  
Sbjct  1    MESFLQFCATCEKQIIVPDNSSLYCSESCRRKDSEKSSSSSSSSS-------SPPLSP--  51

Query  122  SSRMIVAPMTPTKAPLKSTPTTGISTDVHDSKVDQDPSEWKPVIPAAYGSTGSLASTEAW  181
                   P  P      S P +   +   DS  D  P+EWK         + S +S+EAW
Sbjct  52   --FYSSWPSEPRDDASPSRPFSPPPSPSSDSSSDLSPTEWK---RPPSPPSPSRSSSEAW  106

Query  182  HYLSQFHGSEPLFPRRRDGAGHRSSASLSTLMSATAPVPSLTHTPSTTASSFSSTASDYI  241
             YLSQ   S              S +SLS+  S  +   S + + S +++          
Sbjct  107  PYLSQSPSS--------------SRSSLSSESSTPSLSTSSSSSASYSSAYS--------  144

Query  242  GYIPESSHRPLPPRHNPYFSNGAGVTKSVELVVP  275
                 SS RPLPPR     S      KS++LV P
Sbjct  145  ----SSSDRPLPPRPPYSSS--FSRPKSIDLVTP  172



Lambda      K        H        a         alpha
   0.311    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00017562

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432834 pfam12855, Ecl1, Life-span regulatory factor. This fam...  80.2    6e-20


>CDD:432834 pfam12855, Ecl1, Life-span regulatory factor.  This family is 
involved in the chronological life-span of S. cerevisiae. Over-expression 
leads to an extended viability of wild-type strains, 
indicating a role in regulation.
Length=172

 Score = 80.2 bits (198),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 45/97 (46%), Positives = 49/97 (51%), Gaps = 11/97 (11%)

Query  62   AASFLNFCAMCERQITVPDNSLLYCSESCRRKDSHKPLSASFPSSGSIPYLRSPPTSPLV  121
              SFL FCA CE+QI VPDNS LYCSESCRRKDS K  S+S  SS       SPP SP  
Sbjct  1    MESFLQFCATCEKQIIVPDNSSLYCSESCRRKDSEKSSSSSSSSS-------SPPLSP--  51

Query  122  SSRMIVAPMTPTKAPLKSTPTTGISTDVHDSKVDQRP  158
                   P  P      S P +   +   DS  D  P
Sbjct  52   --FYSSWPSEPRDDASPSRPFSPPPSPSSDSSSDLSP  86



Lambda      K        H        a         alpha
   0.314    0.127    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00017563

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432834 pfam12855, Ecl1, Life-span regulatory factor. This fam...  78.7    3e-19


>CDD:432834 pfam12855, Ecl1, Life-span regulatory factor.  This family is 
involved in the chronological life-span of S. cerevisiae. Over-expression 
leads to an extended viability of wild-type strains, 
indicating a role in regulation.
Length=172

 Score = 78.7 bits (194),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 43/92 (47%), Positives = 47/92 (51%), Gaps = 11/92 (12%)

Query  62   AASFLNFCAMCERQITVPDNSLLYCSESCRRKDSHKPLSASFPSSGSIPYLRSPPTSPLV  121
              SFL FCA CE+QI VPDNS LYCSESCRRKDS K  S+S  SS       SPP SP  
Sbjct  1    MESFLQFCATCEKQIIVPDNSSLYCSESCRRKDSEKSSSSSSSSS-------SPPLSP--  51

Query  122  SSRMIVAPMTPTKAPLKSTPTTGISTDVHDSK  153
                   P  P      S P +   +   DS 
Sbjct  52   --FYSSWPSEPRDDASPSRPFSPPPSPSSDSS  81



Lambda      K        H        a         alpha
   0.315    0.127    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00011171

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.123    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00017564

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  225     1e-69


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 225 bits (576),  Expect = 1e-69, Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 139/300 (46%), Gaps = 34/300 (11%)

Query  280  DPQTLYDNRHLVLRGEISSAVMKVRAACLKAFRQVFEEKRMLEVTPPAMVQTQVEGGSTL  339
            D +T    R+L LR     A +K+R+  +KA R   +E   LEV  P + ++    G+  
Sbjct  1    DEETRLKYRYLDLRRPKMQANLKLRSKIIKAIRNFLDENGFLEVETPILTKSATPEGARD  60

Query  340  FK------FDYYGEDAYLTQSSQLYLETCLPS-LGDVFCVCPSFRAEKSLTRRHLSEYTH  392
            F         +Y     L QS QLY +  + +    VF +   FR E   T R   E+T 
Sbjct  61   FLVPSRALGKFY----ALPQSPQLYKQLLMVAGFDRVFQIARCFRDEDLRTDRQP-EFTQ  115

Query  393  IEAELDFITFTDLLDHLEEVICRVIELTLANPATAALIKQLNPDFKPPSRPFRRMKYADA  452
            ++ E+ F+ + D++D  EE+I  + +  +   A                +PF R+ YA+A
Sbjct  116  LDLEMSFVDYEDVMDLTEELIKEIFK-EVEGIAKE----LEGGTLLDLKKPFPRITYAEA  170

Query  453  IQWLVEHDIPNEEGKPHQFGDDIAEAAERKMTDII-----NQPIFLTHFPAEIKAFYMKK  507
            I+ L   D+        + G    +   R + +++       P+++T FPAE   F M K
Sbjct  171  IEKLNGKDVE-------ELGYGSDKPDLRFLLELVIDKNKFNPLWVTDFPAEHHPFTMPK  223

Query  508  DPEDRRVTESVDVLMPGVGEIVGGSMRMDDWDELMAAYKHEGMDP----TPYYWYTDQRK  563
            D +D  + E+ D+++ GV EI GGS+R+ D +     ++ +G+DP      + +Y D  K
Sbjct  224  DEDDPALAEAFDLVLNGV-EIGGGSIRIHDPELQEERFEEQGLDPEEAEEKFGFYLDALK  282



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 703875588


Query= TCONS_00011172

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  225     1e-69


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 225 bits (576),  Expect = 1e-69, Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 139/300 (46%), Gaps = 34/300 (11%)

Query  280  DPQTLYDNRHLVLRGEISSAVMKVRAACLKAFRQVFEEKRMLEVTPPAMVQTQVEGGSTL  339
            D +T    R+L LR     A +K+R+  +KA R   +E   LEV  P + ++    G+  
Sbjct  1    DEETRLKYRYLDLRRPKMQANLKLRSKIIKAIRNFLDENGFLEVETPILTKSATPEGARD  60

Query  340  FK------FDYYGEDAYLTQSSQLYLETCLPS-LGDVFCVCPSFRAEKSLTRRHLSEYTH  392
            F         +Y     L QS QLY +  + +    VF +   FR E   T R   E+T 
Sbjct  61   FLVPSRALGKFY----ALPQSPQLYKQLLMVAGFDRVFQIARCFRDEDLRTDRQP-EFTQ  115

Query  393  IEAELDFITFTDLLDHLEEVICRVIELTLANPATAALIKQLNPDFKPPSRPFRRMKYADA  452
            ++ E+ F+ + D++D  EE+I  + +  +   A                +PF R+ YA+A
Sbjct  116  LDLEMSFVDYEDVMDLTEELIKEIFK-EVEGIAKE----LEGGTLLDLKKPFPRITYAEA  170

Query  453  IQWLVEHDIPNEEGKPHQFGDDIAEAAERKMTDII-----NQPIFLTHFPAEIKAFYMKK  507
            I+ L   D+        + G    +   R + +++       P+++T FPAE   F M K
Sbjct  171  IEKLNGKDVE-------ELGYGSDKPDLRFLLELVIDKNKFNPLWVTDFPAEHHPFTMPK  223

Query  508  DPEDRRVTESVDVLMPGVGEIVGGSMRMDDWDELMAAYKHEGMDP----TPYYWYTDQRK  563
            D +D  + E+ D+++ GV EI GGS+R+ D +     ++ +G+DP      + +Y D  K
Sbjct  224  DEDDPALAEAFDLVLNGV-EIGGGSIRIHDPELQEERFEEQGLDPEEAEEKFGFYLDALK  282



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 703875588


Query= TCONS_00011174

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00011173

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00011175

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.508    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00011176

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0769    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00017565

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.145    0.558    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00011177

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.145    0.558    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00011178

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.528    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00011179

Length=838
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  58.0    3e-11


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 58.0 bits (141),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 25/63 (40%), Positives = 36/63 (57%), Gaps = 5/63 (8%)

Query  509  VYVGNLDETWTEERLRQDFSEYGEIE---LVNTLREKS--CAFVNFTNIANAIKAIEGMR  563
            ++VGNL    TEE L+  FS++G I+   LV     +S   AFV F +  +A KAIE + 
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEALN  60

Query  564  NRE  566
             +E
Sbjct  61   GKE  63


 Score = 58.0 bits (141),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 22/60 (37%), Positives = 37/60 (62%), Gaps = 5/60 (8%)

Query  284  VYLGNLPEELTEDELREDLGKFGPIDTVKIVRE-----KAIGFVHFLSISNAMKAVSQLP  338
            +++GNLP + TE++L++   KFGPI ++++VR+     K   FV F    +A KA+  L 
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEALN  60



Lambda      K        H        a         alpha
   0.313    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1066586902


Query= TCONS_00017566

Length=838
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  58.0    3e-11


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 58.0 bits (141),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 25/63 (40%), Positives = 36/63 (57%), Gaps = 5/63 (8%)

Query  509  VYVGNLDETWTEERLRQDFSEYGEIE---LVNTLREKS--CAFVNFTNIANAIKAIEGMR  563
            ++VGNL    TEE L+  FS++G I+   LV     +S   AFV F +  +A KAIE + 
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEALN  60

Query  564  NRE  566
             +E
Sbjct  61   GKE  63


 Score = 58.0 bits (141),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 22/60 (37%), Positives = 37/60 (62%), Gaps = 5/60 (8%)

Query  284  VYLGNLPEELTEDELREDLGKFGPIDTVKIVRE-----KAIGFVHFLSISNAMKAVSQLP  338
            +++GNLP + TE++L++   KFGPI ++++VR+     K   FV F    +A KA+  L 
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEALN  60



Lambda      K        H        a         alpha
   0.313    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1066586902


Query= TCONS_00011181

Length=838
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  58.0    3e-11


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 58.0 bits (141),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 25/63 (40%), Positives = 36/63 (57%), Gaps = 5/63 (8%)

Query  509  VYVGNLDETWTEERLRQDFSEYGEIE---LVNTLREKS--CAFVNFTNIANAIKAIEGMR  563
            ++VGNL    TEE L+  FS++G I+   LV     +S   AFV F +  +A KAIE + 
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEALN  60

Query  564  NRE  566
             +E
Sbjct  61   GKE  63


 Score = 58.0 bits (141),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 22/60 (37%), Positives = 37/60 (62%), Gaps = 5/60 (8%)

Query  284  VYLGNLPEELTEDELREDLGKFGPIDTVKIVRE-----KAIGFVHFLSISNAMKAVSQLP  338
            +++GNLP + TE++L++   KFGPI ++++VR+     K   FV F    +A KA+  L 
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEALN  60



Lambda      K        H        a         alpha
   0.313    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1066586902


Query= TCONS_00011180

Length=838
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  58.0    3e-11


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 58.0 bits (141),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 25/63 (40%), Positives = 36/63 (57%), Gaps = 5/63 (8%)

Query  509  VYVGNLDETWTEERLRQDFSEYGEIE---LVNTLREKS--CAFVNFTNIANAIKAIEGMR  563
            ++VGNL    TEE L+  FS++G I+   LV     +S   AFV F +  +A KAIE + 
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEALN  60

Query  564  NRE  566
             +E
Sbjct  61   GKE  63


 Score = 58.0 bits (141),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 22/60 (37%), Positives = 37/60 (62%), Gaps = 5/60 (8%)

Query  284  VYLGNLPEELTEDELREDLGKFGPIDTVKIVRE-----KAIGFVHFLSISNAMKAVSQLP  338
            +++GNLP + TE++L++   KFGPI ++++VR+     K   FV F    +A KA+  L 
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEALN  60



Lambda      K        H        a         alpha
   0.313    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1066586902


Query= TCONS_00017567

Length=229


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00011183

Length=229


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00017568

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00017569

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00017570

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00011187

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00011186

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00017571

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00011189

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00011190

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00011191

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00011197

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00011196

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00011193

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00011194

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00017572

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00011195

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00011192

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00017573

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00017574

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00011198

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00011199

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00017575

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00017576

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00011200

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00011201

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00011202

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00011203

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF13...  92.6    2e-24


>CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF1349).  This 
family consists of several hypothetical bacterial proteins 
but contains one sequence from Saccharomyces cerevisiae. 
Members of this family are typically around 200 residues in 
length. The function of this family is unknown.
Length=168

 Score = 92.6 bits (231),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 72/163 (44%), Gaps = 15/163 (9%)

Query  26   TIKASPSTDVWSKP-PSTERFNAPILCRSLPLKSFKRARVAVNANWQQKYDQGGLILVWT  84
            TI   P TD W +      R NAP L    P+     A V V+ ++++ YDQ GL++   
Sbjct  7    TITTPPKTDFWRRTHYGFVRDNAPFLLT--PVAGDFTAEVKVSGDFKELYDQAGLMV---  61

Query  85   AADGTRKWVKTGIELTHGKPHLSTVTKDRWSDWSLLAIPSGGAAA--TIEIVREADESLW  142
              D    W+K GIE   G   L +V  + +SDWS   +PS        + + R  D +  
Sbjct  62   RVDEEN-WIKAGIEYNDGVQRLGSVVTNGYSDWSTSPLPSEWDPKEVWLRVSRRGD-AFT  119

Query  143  V-YLVEGVQKSPLREVTWCFEEQENVECWVGVYAAKPSSEGGD  184
            + Y  +G + + LR            E  VG+YA  P+ EG  
Sbjct  120  IEYSTDGEKWTLLRL----AHLPAAEEVQVGLYACSPTGEGFT  158



Lambda      K        H        a         alpha
   0.315    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00017577

Length=611


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 775608132


Query= TCONS_00011212

Length=532


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00011204

Length=532


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00011211

Length=486


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00011205

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00011206

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF13...  92.6    2e-24


>CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF1349).  This 
family consists of several hypothetical bacterial proteins 
but contains one sequence from Saccharomyces cerevisiae. 
Members of this family are typically around 200 residues in 
length. The function of this family is unknown.
Length=168

 Score = 92.6 bits (231),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 72/163 (44%), Gaps = 15/163 (9%)

Query  26   TIKASPSTDVWSKP-PSTERFNAPILCRSLPLKSFKRARVAVNANWQQKYDQGGLILVWT  84
            TI   P TD W +      R NAP L    P+     A V V+ ++++ YDQ GL++   
Sbjct  7    TITTPPKTDFWRRTHYGFVRDNAPFLLT--PVAGDFTAEVKVSGDFKELYDQAGLMV---  61

Query  85   AADGTRKWVKTGIELTHGKPHLSTVTKDRWSDWSLLAIPSGGAAA--TIEIVREADESLW  142
              D    W+K GIE   G   L +V  + +SDWS   +PS        + + R  D +  
Sbjct  62   RVDEEN-WIKAGIEYNDGVQRLGSVVTNGYSDWSTSPLPSEWDPKEVWLRVSRRGD-AFT  119

Query  143  V-YLVEGVQKSPLREVTWCFEEQENVECWVGVYAAKPSSEGGD  184
            + Y  +G + + LR            E  VG+YA  P+ EG  
Sbjct  120  IEYSTDGEKWTLLRL----AHLPAAEEVQVGLYACSPTGEGFT  158



Lambda      K        H        a         alpha
   0.315    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00011208

Length=430


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521459360


Query= TCONS_00011210

Length=510


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0682    0.140     1.90     42.6     43.6 

Effective search space used: 634393654


Query= TCONS_00011213

Length=589


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 742730716


Query= TCONS_00017578

Length=570


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 714336584


Query= TCONS_00017579

Length=305


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00017581

Length=532


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00017580

Length=612


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 777102560


Query= TCONS_00017582

Length=351


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00017583

Length=305


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00011214

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00017584

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  213     5e-72
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  86.0    1e-22


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 213 bits (544),  Expect = 5e-72, Method: Composition-based stats.
 Identities = 70/171 (41%), Positives = 101/171 (59%), Gaps = 16/171 (9%)

Query  7    KYVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGDEPYTLGLFDTAGQED  65
            K V+VGDG VGK+ LLI +T NKFP EY+PT+  D Y  T+ +  +   L ++DTAGQE 
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  66   YDRLRPLSYPQTDVFLVCFSVTSPASFENVREKWFPEVHHHCP-GVPCLIVGTQTDLRDD  124
            +  LRPL Y   D FL+ + +TS  SFENV+ KW  E+  H    VP ++VG + DL D 
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVK-KWVEEILRHADENVPIVLVGNKCDLEDQ  119

Query  125  PAVREKLARQKMQPIRKEDGDRMAKELGAVKYVECSALTQYKLKDVFDEAI  175
                        + +  E+G+ +AKELG + ++E SA T   +++ F+E  
Sbjct  120  ------------RVVSTEEGEALAKELG-LPFMETSAKTNENVEEAFEELA  157


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 86.0 bits (214),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 34/118 (29%), Positives = 55/118 (47%), Gaps = 8/118 (7%)

Query  7    KYVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGD-EPYTLGLFDTAG  62
            K V++GD  VGKT LL  +  + F  +Y  T+   F    V     + +   L ++DTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  63   QEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVREKWFPEVHHHCPGVPCLIVGTQTD  120
            QE +  L P  Y      L+ +      +F N+ + W  E+  +    P ++VG + D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDSR---TFSNL-KYWLRELKKYAGNSPVILVGNKID  114



Lambda      K        H        a         alpha
   0.321    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00011218

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  214     2e-72
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  86.0    1e-22


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 214 bits (547),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 70/171 (41%), Positives = 101/171 (59%), Gaps = 16/171 (9%)

Query  7    KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGDEPYTLGLFDTAGQED  65
            K V+VGDG VGK+ LLI +T NKFP EY+PT+  D Y  T+ +  +   L ++DTAGQE 
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  66   YDRLRPLSYPQTDVFLVCFSVTSPASFENVREKWFPEVHHHCP-GVPCLIVGTQTDLRDD  124
            +  LRPL Y   D FL+ + +TS  SFENV+ KW  E+  H    VP ++VG + DL D 
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVK-KWVEEILRHADENVPIVLVGNKCDLEDQ  119

Query  125  PAVREKLARQKMQPIRKEDGDRMAKELGAVKYVECSALTQYKLKDVFDEAI  175
                        + +  E+G+ +AKELG + ++E SA T   +++ F+E  
Sbjct  120  ------------RVVSTEEGEALAKELG-LPFMETSAKTNENVEEAFEELA  157


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 86.0 bits (214),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 34/118 (29%), Positives = 55/118 (47%), Gaps = 8/118 (7%)

Query  7    KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGD-EPYTLGLFDTAG  62
            K V++GD  VGKT LL  +  + F  +Y  T+   F    V     + +   L ++DTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  63   QEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVREKWFPEVHHHCPGVPCLIVGTQTD  120
            QE +  L P  Y      L+ +      +F N+ + W  E+  +    P ++VG + D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDSR---TFSNL-KYWLRELKKYAGNSPVILVGNKID  114



Lambda      K        H        a         alpha
   0.321    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00011216

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  214     2e-72
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  86.0    1e-22


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 214 bits (547),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 70/171 (41%), Positives = 101/171 (59%), Gaps = 16/171 (9%)

Query  7    KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGDEPYTLGLFDTAGQED  65
            K V+VGDG VGK+ LLI +T NKFP EY+PT+  D Y  T+ +  +   L ++DTAGQE 
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  66   YDRLRPLSYPQTDVFLVCFSVTSPASFENVREKWFPEVHHHCP-GVPCLIVGTQTDLRDD  124
            +  LRPL Y   D FL+ + +TS  SFENV+ KW  E+  H    VP ++VG + DL D 
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVK-KWVEEILRHADENVPIVLVGNKCDLEDQ  119

Query  125  PAVREKLARQKMQPIRKEDGDRMAKELGAVKYVECSALTQYKLKDVFDEAI  175
                        + +  E+G+ +AKELG + ++E SA T   +++ F+E  
Sbjct  120  ------------RVVSTEEGEALAKELG-LPFMETSAKTNENVEEAFEELA  157


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 86.0 bits (214),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 34/118 (29%), Positives = 55/118 (47%), Gaps = 8/118 (7%)

Query  7    KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGD-EPYTLGLFDTAG  62
            K V++GD  VGKT LL  +  + F  +Y  T+   F    V     + +   L ++DTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  63   QEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVREKWFPEVHHHCPGVPCLIVGTQTD  120
            QE +  L P  Y      L+ +      +F N+ + W  E+  +    P ++VG + D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDSR---TFSNL-KYWLRELKKYAGNSPVILVGNKID  114



Lambda      K        H        a         alpha
   0.321    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00011215

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  211     1e-71
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  84.9    3e-22


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 211 bits (541),  Expect = 1e-71, Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 102/170 (60%), Gaps = 16/170 (9%)

Query  7    KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGDEPYTLGLFDTAGQED  65
            K V+VGDG VGK+ LLI +T NKFP EY+PT+  D Y  T+ +  +   L ++DTAGQE 
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  66   YDRLRPLSYPQTDVFLVCFSVTSPASFENVREKWFPEVHHHCP-GVPCLIVGTQTDLRDD  124
            +  LRPL Y   D FL+ + +TS  SFENV+ KW  E+  H    VP ++VG + DL D 
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVK-KWVEEILRHADENVPIVLVGNKCDLEDQ  119

Query  125  PAVREKLARQKMQPIRKEDGDRMAKELGAVKYVECSALTQYKLKDVFDEV  174
                        + +  E+G+ +AKELG + ++E SA T   +++ F+E+
Sbjct  120  ------------RVVSTEEGEALAKELG-LPFMETSAKTNENVEEAFEEL  156


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 84.9 bits (211),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 34/118 (29%), Positives = 55/118 (47%), Gaps = 8/118 (7%)

Query  7    KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGD-EPYTLGLFDTAG  62
            K V++GD  VGKT LL  +  + F  +Y  T+   F    V     + +   L ++DTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  63   QEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVREKWFPEVHHHCPGVPCLIVGTQTD  120
            QE +  L P  Y      L+ +      +F N+ + W  E+  +    P ++VG + D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDSR---TFSNL-KYWLRELKKYAGNSPVILVGNKID  114



Lambda      K        H        a         alpha
   0.322    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00011217

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  203     2e-63
CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  137     5e-40


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 203 bits (518),  Expect = 2e-63, Method: Composition-based stats.
 Identities = 84/262 (32%), Positives = 126/262 (48%), Gaps = 18/262 (7%)

Query  2    RRVVVTGLGAVTPLGVGVRRTWKRLLDGHCGIVNV---KHRDARFADLPCQIAAVVPV--  56
              V + G+G   P G      W+ LL+G  GI  +   +    +  D P +IA  +    
Sbjct  1    EPVAIVGMGCRFPGGNDPEEFWENLLEGRDGISEIPADRWDPDKLYDPPSRIAGKIYTKW  60

Query  57   -GPRQEGGWTASEW-LSRDDERKMARFAQYAMAASEEALEDAGWKPTSFEEREATGICLG  114
             G      +    + +S  +  +M    +  + A+ EALEDAG  P S +    TG+ +G
Sbjct  61   GGLDDIFDFDPLFFGISPREAERMDPQQRLLLEAAWEALEDAGITPDSLDGS-RTGVFIG  119

Query  115  SGIGNFDEIYDTVVAYDKGGYRKVSPLFVPKLLINLGAGHLSMRYGFMGPNHAVTTACTT  174
            SGIG++  +   ++  + GG R+ SP  V  +  ++ AG +S   G  GP+  V TAC++
Sbjct  120  SGIGDYAAL---LLLDEDGGPRRGSPFAVGTM-PSVIAGRISYFLGLRGPSVTVDTACSS  175

Query  175  GAHSIGDAARFITCGDADVMLAGGAESCIHPLAIGGFARARSLATDFNDAPEKASRPFDA  234
               +I  A + I  G+ADV LAGG    + PL   GF+ A  L+    D P KA  PF  
Sbjct  176  SLVAIHAAVQSIRSGEADVALAGGVNLLLTPLGFAGFSAAGMLSP---DGPCKAFDPFA-  231

Query  235  DRKGFVVGEGAAMLVLEELEHA  256
               GFV GEG   +VL+ L  A
Sbjct  232  --DGFVRGEGVGAVVLKRLSDA  251


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 137 bits (347),  Expect = 5e-40, Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 66/121 (55%), Gaps = 3/121 (2%)

Query  264  YAELKGYGCSGDAHHMTAPKENGEGAWMAMKKALKNASLPPSAVDYVNAHATSTVVGDAA  323
            YA +KG   + D  H      NGEG   A+++AL +A + P  VDYV AH T T +GD  
Sbjct  1    YAVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDPEDVDYVEAHGTGTPLGDPI  60

Query  324  ENAAIKSLLLGPEGKQNAAEINVSSTKGAVGHLLGGAGALESLFTVLAINENVMPPTINL  383
            E  A+K +      KQ  A   + S K  +GHL G AGA   +  VLA+   V+PPT+NL
Sbjct  61   EAEALKRVFGSGARKQPLA---IGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTLNL  117

Query  384  D  384
            +
Sbjct  118  E  118



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00011219

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462422 pfam08313, SCA7, SCA7, zinc-binding domain. This domai...  108     6e-30


>CDD:462422 pfam08313, SCA7, SCA7, zinc-binding domain.  This domain is found 
in the protein Sgf73/Sca7 which is a component of the multihistone 
acetyltransferase complexes SAGA and SILK. This 
domain is also found in Ataxin-7, a human protein which in its 
polyglutamine expanded pathological form, is responsible 
for the neurodegenerative disease spinocerebellar ataxia 7 (SCA7). 
Ataxin-7 is an integral component of the mammalian SAGA-like 
complexes, the TATA-binding protein-free TAF-containing 
complex (TFTC) and the SPT3/TAF9/GCN5 acetyltransferase 
complex (STAGA). This domain is a minimal domain in ataxin-7-like 
proteins that is required for interaction with TFTC/STAGA 
subunits and is conserved highly through evolution. The 
domain contains a conserved Cys(3)His motif that binds zinc, 
thus indicating this to be a new zinc-binding domain.
Length=61

 Score = 108 bits (271),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 43/53 (81%), Positives = 47/53 (89%), Gaps = 0/53 (0%)

Query  210  VDVEKQCGVILPNGAQCARSLTCKSHSMGAKRAVPGRSLPYDMLLQAYQKKNQ  262
            VDV+KQCGVILPNG  C RSLTCK+HSMGAKRAVPGRS P+D+LL  YQKKNQ
Sbjct  9    VDVDKQCGVILPNGGPCTRSLTCKTHSMGAKRAVPGRSKPFDVLLAEYQKKNQ  61



Lambda      K        H        a         alpha
   0.306    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00017585

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  133     6e-40
CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  109     4e-29


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 133 bits (336),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 66/121 (55%), Gaps = 3/121 (2%)

Query  108  YAELKGYGCSGDAHHMTAPKENGEGAWMAMKKALKNASLPPSAVDYVNAHATSTVVGDAA  167
            YA +KG   + D  H      NGEG   A+++AL +A + P  VDYV AH T T +GD  
Sbjct  1    YAVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDPEDVDYVEAHGTGTPLGDPI  60

Query  168  ENAAIKSLLLGPEGKQNAAEINVSSTKGAVGHLLGGAGALESLFTVLAINENVMPPTINL  227
            E  A+K +      KQ  A   + S K  +GHL G AGA   +  VLA+   V+PPT+NL
Sbjct  61   EAEALKRVFGSGARKQPLA---IGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTLNL  117

Query  228  D  228
            +
Sbjct  118  E  118


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 109 bits (274),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 40/100 (40%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query  1    MRYGFMGPNHAVTTACTTGAHSIGDAARFITCGDADVMLAGGAESCIHPLAIGGFARARS  60
               G  GP+  V TAC++   +I  A + I  G+ADV LAGG    + PL   GF+ A  
Sbjct  158  YFLGLRGPSVTVDTACSSSLVAIHAAVQSIRSGEADVALAGGVNLLLTPLGFAGFSAAGM  217

Query  61   LATDFNDAPEKASRPFDADRKGFVVGEGAAMLVLEELEHA  100
            L+    D P KA  PF     GFV GEG   +VL+ L  A
Sbjct  218  LSP---DGPCKAFDPFA---DGFVRGEGVGAVVLKRLSDA  251



Lambda      K        H        a         alpha
   0.316    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00017586

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  199     1e-62
CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  120     4e-34


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 199 bits (509),  Expect = 1e-62, Method: Composition-based stats.
 Identities = 84/262 (32%), Positives = 126/262 (48%), Gaps = 18/262 (7%)

Query  2    RRVVVTGLGAVTPLGVGVRRTWKRLLDGHCGIVNV---KHRDARFADLPCQIAAVVPV--  56
              V + G+G   P G      W+ LL+G  GI  +   +    +  D P +IA  +    
Sbjct  1    EPVAIVGMGCRFPGGNDPEEFWENLLEGRDGISEIPADRWDPDKLYDPPSRIAGKIYTKW  60

Query  57   -GPRQEGGWTASEW-LSRDDERKMARFAQYAMAASEEALEDAGWKPTSFEEREATGICLG  114
             G      +    + +S  +  +M    +  + A+ EALEDAG  P S +    TG+ +G
Sbjct  61   GGLDDIFDFDPLFFGISPREAERMDPQQRLLLEAAWEALEDAGITPDSLDGS-RTGVFIG  119

Query  115  SGIGNFDEIYDTVVAYDKGGYRKVSPLFVPKLLINLGAGHLSMRYGFMGPNHAVTTACTT  174
            SGIG++  +   ++  + GG R+ SP  V  +  ++ AG +S   G  GP+  V TAC++
Sbjct  120  SGIGDYAAL---LLLDEDGGPRRGSPFAVGTM-PSVIAGRISYFLGLRGPSVTVDTACSS  175

Query  175  GAHSIGDAARFITCGDADVMLAGGAESCIHPLAIGGFARARSLATDFNDAPEKASRPFDA  234
               +I  A + I  G+ADV LAGG    + PL   GF+ A  L+    D P KA  PF  
Sbjct  176  SLVAIHAAVQSIRSGEADVALAGGVNLLLTPLGFAGFSAAGMLSP---DGPCKAFDPFA-  231

Query  235  DRKGFVVGEGAAMLVLEELEHA  256
               GFV GEG   +VL+ L  A
Sbjct  232  --DGFVRGEGVGAVVLKRLSDA  251


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 120 bits (304),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 43/111 (39%), Positives = 57/111 (51%), Gaps = 3/111 (3%)

Query  264  YAELKGYGCSGDAHHMTAPKENGEGAWMAMKKALKNASLPPSAVDYVNAHATSTVVGDAA  323
            YA +KG   + D  H      NGEG   A+++AL +A + P  VDYV AH T T +GD  
Sbjct  1    YAVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDPEDVDYVEAHGTGTPLGDPI  60

Query  324  ENAAIKSLLLGPEGKQNAAEINVSSTKGAVGHLLGGAGALESLFTVLAINE  374
            E  A+K +      KQ  A   + S K  +GHL G AGA   +  VLA+  
Sbjct  61   EAEALKRVFGSGARKQPLA---IGSVKSNIGHLEGAAGAAGLIKVVLALRH  108



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00011220

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462422 pfam08313, SCA7, SCA7, zinc-binding domain. This domai...  108     6e-30


>CDD:462422 pfam08313, SCA7, SCA7, zinc-binding domain.  This domain is found 
in the protein Sgf73/Sca7 which is a component of the multihistone 
acetyltransferase complexes SAGA and SILK. This 
domain is also found in Ataxin-7, a human protein which in its 
polyglutamine expanded pathological form, is responsible 
for the neurodegenerative disease spinocerebellar ataxia 7 (SCA7). 
Ataxin-7 is an integral component of the mammalian SAGA-like 
complexes, the TATA-binding protein-free TAF-containing 
complex (TFTC) and the SPT3/TAF9/GCN5 acetyltransferase 
complex (STAGA). This domain is a minimal domain in ataxin-7-like 
proteins that is required for interaction with TFTC/STAGA 
subunits and is conserved highly through evolution. The 
domain contains a conserved Cys(3)His motif that binds zinc, 
thus indicating this to be a new zinc-binding domain.
Length=61

 Score = 108 bits (271),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 43/53 (81%), Positives = 47/53 (89%), Gaps = 0/53 (0%)

Query  210  VDVEKQCGVILPNGAQCARSLTCKSHSMGAKRAVPGRSLPYDMLLQAYQKKNQ  262
            VDV+KQCGVILPNG  C RSLTCK+HSMGAKRAVPGRS P+D+LL  YQKKNQ
Sbjct  9    VDVDKQCGVILPNGGPCTRSLTCKTHSMGAKRAVPGRSKPFDVLLAEYQKKNQ  61



Lambda      K        H        a         alpha
   0.306    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00017587

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  203     2e-63
CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  137     5e-40


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 203 bits (518),  Expect = 2e-63, Method: Composition-based stats.
 Identities = 84/262 (32%), Positives = 126/262 (48%), Gaps = 18/262 (7%)

Query  2    RRVVVTGLGAVTPLGVGVRRTWKRLLDGHCGIVNV---KHRDARFADLPCQIAAVVPV--  56
              V + G+G   P G      W+ LL+G  GI  +   +    +  D P +IA  +    
Sbjct  1    EPVAIVGMGCRFPGGNDPEEFWENLLEGRDGISEIPADRWDPDKLYDPPSRIAGKIYTKW  60

Query  57   -GPRQEGGWTASEW-LSRDDERKMARFAQYAMAASEEALEDAGWKPTSFEEREATGICLG  114
             G      +    + +S  +  +M    +  + A+ EALEDAG  P S +    TG+ +G
Sbjct  61   GGLDDIFDFDPLFFGISPREAERMDPQQRLLLEAAWEALEDAGITPDSLDGS-RTGVFIG  119

Query  115  SGIGNFDEIYDTVVAYDKGGYRKVSPLFVPKLLINLGAGHLSMRYGFMGPNHAVTTACTT  174
            SGIG++  +   ++  + GG R+ SP  V  +  ++ AG +S   G  GP+  V TAC++
Sbjct  120  SGIGDYAAL---LLLDEDGGPRRGSPFAVGTM-PSVIAGRISYFLGLRGPSVTVDTACSS  175

Query  175  GAHSIGDAARFITCGDADVMLAGGAESCIHPLAIGGFARARSLATDFNDAPEKASRPFDA  234
               +I  A + I  G+ADV LAGG    + PL   GF+ A  L+    D P KA  PF  
Sbjct  176  SLVAIHAAVQSIRSGEADVALAGGVNLLLTPLGFAGFSAAGMLSP---DGPCKAFDPFA-  231

Query  235  DRKGFVVGEGAAMLVLEELEHA  256
               GFV GEG   +VL+ L  A
Sbjct  232  --DGFVRGEGVGAVVLKRLSDA  251


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 137 bits (347),  Expect = 5e-40, Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 66/121 (55%), Gaps = 3/121 (2%)

Query  264  YAELKGYGCSGDAHHMTAPKENGEGAWMAMKKALKNASLPPSAVDYVNAHATSTVVGDAA  323
            YA +KG   + D  H      NGEG   A+++AL +A + P  VDYV AH T T +GD  
Sbjct  1    YAVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDPEDVDYVEAHGTGTPLGDPI  60

Query  324  ENAAIKSLLLGPEGKQNAAEINVSSTKGAVGHLLGGAGALESLFTVLAINENVMPPTINL  383
            E  A+K +      KQ  A   + S K  +GHL G AGA   +  VLA+   V+PPT+NL
Sbjct  61   EAEALKRVFGSGARKQPLA---IGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTLNL  117

Query  384  D  384
            +
Sbjct  118  E  118



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00011221

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  133     6e-40
CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  109     4e-29


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 133 bits (336),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 66/121 (55%), Gaps = 3/121 (2%)

Query  108  YAELKGYGCSGDAHHMTAPKENGEGAWMAMKKALKNASLPPSAVDYVNAHATSTVVGDAA  167
            YA +KG   + D  H      NGEG   A+++AL +A + P  VDYV AH T T +GD  
Sbjct  1    YAVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDPEDVDYVEAHGTGTPLGDPI  60

Query  168  ENAAIKSLLLGPEGKQNAAEINVSSTKGAVGHLLGGAGALESLFTVLAINENVMPPTINL  227
            E  A+K +      KQ  A   + S K  +GHL G AGA   +  VLA+   V+PPT+NL
Sbjct  61   EAEALKRVFGSGARKQPLA---IGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTLNL  117

Query  228  D  228
            +
Sbjct  118  E  118


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 109 bits (274),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 40/100 (40%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query  1    MRYGFMGPNHAVTTACTTGAHSIGDAARFITCGDADVMLAGGAESCIHPLAIGGFARARS  60
               G  GP+  V TAC++   +I  A + I  G+ADV LAGG    + PL   GF+ A  
Sbjct  158  YFLGLRGPSVTVDTACSSSLVAIHAAVQSIRSGEADVALAGGVNLLLTPLGFAGFSAAGM  217

Query  61   LATDFNDAPEKASRPFDADRKGFVVGEGAAMLVLEELEHA  100
            L+    D P KA  PF     GFV GEG   +VL+ L  A
Sbjct  218  LSP---DGPCKAFDPFA---DGFVRGEGVGAVVLKRLSDA  251



Lambda      K        H        a         alpha
   0.316    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00011224

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  163     3e-49
CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  135     6e-40


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 163 bits (416),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 67/179 (37%), Positives = 95/179 (53%), Gaps = 11/179 (6%)

Query  1    MARFAQYAMAASEEALEDAGWKPTSFEEREATGICLGSGIGNFDEIYDTVVAYDKGGYRK  60
            M    +  + A+ EALEDAG  P S +    TG+ +GSGIG++  +   ++  + GG R+
Sbjct  84   MDPQQRLLLEAAWEALEDAGITPDSLDGS-RTGVFIGSGIGDYAAL---LLLDEDGGPRR  139

Query  61   VSPLFVPKLLINLGAGHLSMRYGFMGPNHAVTTACTTGAHSIGDAARFITCGDADVMLAG  120
             SP  V  +  ++ AG +S   G  GP+  V TAC++   +I  A + I  G+ADV LAG
Sbjct  140  GSPFAVGTM-PSVIAGRISYFLGLRGPSVTVDTACSSSLVAIHAAVQSIRSGEADVALAG  198

Query  121  GAESCIHPLAIGGFARARSLATDFNDAPEKASRPFDADRKGFVVGEGAAMLVLEELEHA  179
            G    + PL   GF+ A  L+    D P KA  PF     GFV GEG   +VL+ L  A
Sbjct  199  GVNLLLTPLGFAGFSAAGMLSP---DGPCKAFDPFA---DGFVRGEGVGAVVLKRLSDA  251


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 135 bits (342),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 66/121 (55%), Gaps = 3/121 (2%)

Query  187  YAELKGYGCSGDAHHMTAPKENGEGAWMAMKKALKNASLPPSAVDYVNAHATSTVVGDAA  246
            YA +KG   + D  H      NGEG   A+++AL +A + P  VDYV AH T T +GD  
Sbjct  1    YAVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDPEDVDYVEAHGTGTPLGDPI  60

Query  247  ENAAIKSLLLGPEGKQNAAEINVSSTKGAVGHLLGGAGALESLFTVLAINENVMPPTINL  306
            E  A+K +      KQ  A   + S K  +GHL G AGA   +  VLA+   V+PPT+NL
Sbjct  61   EAEALKRVFGSGARKQPLA---IGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTLNL  117

Query  307  D  307
            +
Sbjct  118  E  118



Lambda      K        H        a         alpha
   0.316    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00011225

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  133     1e-40
CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  69.6    7e-15


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 133 bits (338),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 66/121 (55%), Gaps = 3/121 (2%)

Query  71   YAELKGYGCSGDAHHMTAPKENGEGAWMAMKKALKNASLPPSAVDYVNAHATSTVVGDAA  130
            YA +KG   + D  H      NGEG   A+++AL +A + P  VDYV AH T T +GD  
Sbjct  1    YAVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDPEDVDYVEAHGTGTPLGDPI  60

Query  131  ENAAIKSLLLGPEGKQNAAEINVSSTKGAVGHLLGGAGALESLFTVLAINENVMPPTINL  190
            E  A+K +      KQ  A   + S K  +GHL G AGA   +  VLA+   V+PPT+NL
Sbjct  61   EAEALKRVFGSGARKQPLA---IGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTLNL  117

Query  191  D  191
            +
Sbjct  118  E  118


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 69.6 bits (171),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 6/63 (10%)

Query  1    MLAGGAESCIHPLAIGGFARARSLATDFNDAPEKASRPFDADRKGFVVGEGAAMLVLEEL  60
             LAGG    + PL   GF+ A  L+ D    P KA  PF     GFV GEG   +VL+ L
Sbjct  195  ALAGGVNLLLTPLGFAGFSAAGMLSPD---GPCKAFDPFA---DGFVRGEGVGAVVLKRL  248

Query  61   EHA  63
              A
Sbjct  249  SDA  251



Lambda      K        H        a         alpha
   0.315    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00011226

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  179     2e-54
CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  138     2e-40


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 179 bits (456),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 79/245 (32%), Positives = 119/245 (49%), Gaps = 18/245 (7%)

Query  10   VRRTWKRLLDGHCGIVNV---KHRDARFADLPCQIAAVVPV---GPRQEGGWTASEW-LS  62
                W+ LL+G  GI  +   +    +  D P +IA  +     G      +    + +S
Sbjct  18   PEEFWENLLEGRDGISEIPADRWDPDKLYDPPSRIAGKIYTKWGGLDDIFDFDPLFFGIS  77

Query  63   RDDERKMARFAQYAMAASEEALEDAGWKPTSFEEREATGICLGSGIGNFDEIYDTVVAYD  122
              +  +M    +  + A+ EALEDAG  P S +    TG+ +GSGIG++  +   ++  +
Sbjct  78   PREAERMDPQQRLLLEAAWEALEDAGITPDSLDGS-RTGVFIGSGIGDYAAL---LLLDE  133

Query  123  KGGYRKVSPLFVPKLLINLGAGHLSMRYGFMGPNHAVTTACTTGAHSIGDAARFITCGDA  182
             GG R+ SP  V  +  ++ AG +S   G  GP+  V TAC++   +I  A + I  G+A
Sbjct  134  DGGPRRGSPFAVGTM-PSVIAGRISYFLGLRGPSVTVDTACSSSLVAIHAAVQSIRSGEA  192

Query  183  DVMLAGGAESCIHPLAIGGFARARSLATDFNDAPEKASRPFDADRKGFVVGEGAAMLVLE  242
            DV LAGG    + PL   GF+ A  L+    D P KA  PF     GFV GEG   +VL+
Sbjct  193  DVALAGGVNLLLTPLGFAGFSAAGMLSP---DGPCKAFDPFA---DGFVRGEGVGAVVLK  246

Query  243  ELEHA  247
             L  A
Sbjct  247  RLSDA  251


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 138 bits (349),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 66/121 (55%), Gaps = 3/121 (2%)

Query  255  YAELKGYGCSGDAHHMTAPKENGEGAWMAMKKALKNASLPPSAVDYVNAHATSTVVGDAA  314
            YA +KG   + D  H      NGEG   A+++AL +A + P  VDYV AH T T +GD  
Sbjct  1    YAVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDPEDVDYVEAHGTGTPLGDPI  60

Query  315  ENAAIKSLLLGPEGKQNAAEINVSSTKGAVGHLLGGAGALESLFTVLAINENVMPPTINL  374
            E  A+K +      KQ  A   + S K  +GHL G AGA   +  VLA+   V+PPT+NL
Sbjct  61   EAEALKRVFGSGARKQPLA---IGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTLNL  117

Query  375  D  375
            +
Sbjct  118  E  118



Lambda      K        H        a         alpha
   0.318    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00017588

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  165     8e-50
CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  136     3e-40


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 165 bits (421),  Expect = 8e-50, Method: Composition-based stats.
 Identities = 67/181 (37%), Positives = 96/181 (53%), Gaps = 11/181 (6%)

Query  9    RKMARFAQYAMAASEEALEDAGWKPTSFEEREATGICLGSGIGNFDEIYDTVVAYDKGGY  68
             +M    +  + A+ EALEDAG  P S +    TG+ +GSGIG++  +   ++  + GG 
Sbjct  82   ERMDPQQRLLLEAAWEALEDAGITPDSLDGS-RTGVFIGSGIGDYAAL---LLLDEDGGP  137

Query  69   RKVSPLFVPKLLINLGAGHLSMRYGFMGPNHAVTTACTTGAHSIGDAARFITCGDADVML  128
            R+ SP  V  +  ++ AG +S   G  GP+  V TAC++   +I  A + I  G+ADV L
Sbjct  138  RRGSPFAVGTM-PSVIAGRISYFLGLRGPSVTVDTACSSSLVAIHAAVQSIRSGEADVAL  196

Query  129  AGGAESCIHPLAIGGFARARSLATDFNDAPEKASRPFDADRKGFVVGEGAAMLVLEELEH  188
            AGG    + PL   GF+ A  L+    D P KA  PF     GFV GEG   +VL+ L  
Sbjct  197  AGGVNLLLTPLGFAGFSAAGMLSP---DGPCKAFDPFA---DGFVRGEGVGAVVLKRLSD  250

Query  189  A  189
            A
Sbjct  251  A  251


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 136 bits (344),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 66/121 (55%), Gaps = 3/121 (2%)

Query  197  YAELKGYGCSGDAHHMTAPKENGEGAWMAMKKALKNASLPPSAVDYVNAHATSTVVGDAA  256
            YA +KG   + D  H      NGEG   A+++AL +A + P  VDYV AH T T +GD  
Sbjct  1    YAVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDPEDVDYVEAHGTGTPLGDPI  60

Query  257  ENAAIKSLLLGPEGKQNAAEINVSSTKGAVGHLLGGAGALESLFTVLAINENVMPPTINL  316
            E  A+K +      KQ  A   + S K  +GHL G AGA   +  VLA+   V+PPT+NL
Sbjct  61   EAEALKRVFGSGARKQPLA---IGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTLNL  117

Query  317  D  317
            +
Sbjct  118  E  118



Lambda      K        H        a         alpha
   0.316    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00017591

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462422 pfam08313, SCA7, SCA7, zinc-binding domain. This domai...  107     5e-31


>CDD:462422 pfam08313, SCA7, SCA7, zinc-binding domain.  This domain is found 
in the protein Sgf73/Sca7 which is a component of the multihistone 
acetyltransferase complexes SAGA and SILK. This 
domain is also found in Ataxin-7, a human protein which in its 
polyglutamine expanded pathological form, is responsible 
for the neurodegenerative disease spinocerebellar ataxia 7 (SCA7). 
Ataxin-7 is an integral component of the mammalian SAGA-like 
complexes, the TATA-binding protein-free TAF-containing 
complex (TFTC) and the SPT3/TAF9/GCN5 acetyltransferase 
complex (STAGA). This domain is a minimal domain in ataxin-7-like 
proteins that is required for interaction with TFTC/STAGA 
subunits and is conserved highly through evolution. The 
domain contains a conserved Cys(3)His motif that binds zinc, 
thus indicating this to be a new zinc-binding domain.
Length=61

 Score = 107 bits (269),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 43/53 (81%), Positives = 47/53 (89%), Gaps = 0/53 (0%)

Query  167  VDVEKQCGVILPNGAQCARSLTCKSHSMGAKRAVPGRSLPYDMLLQAYQKKNQ  219
            VDV+KQCGVILPNG  C RSLTCK+HSMGAKRAVPGRS P+D+LL  YQKKNQ
Sbjct  9    VDVDKQCGVILPNGGPCTRSLTCKTHSMGAKRAVPGRSKPFDVLLAEYQKKNQ  61



Lambda      K        H        a         alpha
   0.309    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00011227

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462422 pfam08313, SCA7, SCA7, zinc-binding domain. This domai...  106     8e-30


>CDD:462422 pfam08313, SCA7, SCA7, zinc-binding domain.  This domain is found 
in the protein Sgf73/Sca7 which is a component of the multihistone 
acetyltransferase complexes SAGA and SILK. This 
domain is also found in Ataxin-7, a human protein which in its 
polyglutamine expanded pathological form, is responsible 
for the neurodegenerative disease spinocerebellar ataxia 7 (SCA7). 
Ataxin-7 is an integral component of the mammalian SAGA-like 
complexes, the TATA-binding protein-free TAF-containing 
complex (TFTC) and the SPT3/TAF9/GCN5 acetyltransferase 
complex (STAGA). This domain is a minimal domain in ataxin-7-like 
proteins that is required for interaction with TFTC/STAGA 
subunits and is conserved highly through evolution. The 
domain contains a conserved Cys(3)His motif that binds zinc, 
thus indicating this to be a new zinc-binding domain.
Length=61

 Score = 106 bits (267),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 43/53 (81%), Positives = 47/53 (89%), Gaps = 0/53 (0%)

Query  137  VDVEKQCGVILPNGAQCARSLTCKSHSMGAKRAVPGRSLPYDMLLQAYQKKNQ  189
            VDV+KQCGVILPNG  C RSLTCK+HSMGAKRAVPGRS P+D+LL  YQKKNQ
Sbjct  9    VDVDKQCGVILPNGGPCTRSLTCKTHSMGAKRAVPGRSKPFDVLLAEYQKKNQ  61



Lambda      K        H        a         alpha
   0.308    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00017592

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462422 pfam08313, SCA7, SCA7, zinc-binding domain. This domai...  108     3e-30


>CDD:462422 pfam08313, SCA7, SCA7, zinc-binding domain.  This domain is found 
in the protein Sgf73/Sca7 which is a component of the multihistone 
acetyltransferase complexes SAGA and SILK. This 
domain is also found in Ataxin-7, a human protein which in its 
polyglutamine expanded pathological form, is responsible 
for the neurodegenerative disease spinocerebellar ataxia 7 (SCA7). 
Ataxin-7 is an integral component of the mammalian SAGA-like 
complexes, the TATA-binding protein-free TAF-containing 
complex (TFTC) and the SPT3/TAF9/GCN5 acetyltransferase 
complex (STAGA). This domain is a minimal domain in ataxin-7-like 
proteins that is required for interaction with TFTC/STAGA 
subunits and is conserved highly through evolution. The 
domain contains a conserved Cys(3)His motif that binds zinc, 
thus indicating this to be a new zinc-binding domain.
Length=61

 Score = 108 bits (271),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 43/53 (81%), Positives = 47/53 (89%), Gaps = 0/53 (0%)

Query  167  VDVEKQCGVILPNGAQCARSLTCKSHSMGAKRAVPGRSLPYDMLLQAYQKKNQ  219
            VDV+KQCGVILPNG  C RSLTCK+HSMGAKRAVPGRS P+D+LL  YQKKNQ
Sbjct  9    VDVDKQCGVILPNGGPCTRSLTCKTHSMGAKRAVPGRSKPFDVLLAEYQKKNQ  61



Lambda      K        H        a         alpha
   0.308    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00011228

Length=412
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462422 pfam08313, SCA7, SCA7, zinc-binding domain. This domai...  108     4e-30


>CDD:462422 pfam08313, SCA7, SCA7, zinc-binding domain.  This domain is found 
in the protein Sgf73/Sca7 which is a component of the multihistone 
acetyltransferase complexes SAGA and SILK. This 
domain is also found in Ataxin-7, a human protein which in its 
polyglutamine expanded pathological form, is responsible 
for the neurodegenerative disease spinocerebellar ataxia 7 (SCA7). 
Ataxin-7 is an integral component of the mammalian SAGA-like 
complexes, the TATA-binding protein-free TAF-containing 
complex (TFTC) and the SPT3/TAF9/GCN5 acetyltransferase 
complex (STAGA). This domain is a minimal domain in ataxin-7-like 
proteins that is required for interaction with TFTC/STAGA 
subunits and is conserved highly through evolution. The 
domain contains a conserved Cys(3)His motif that binds zinc, 
thus indicating this to be a new zinc-binding domain.
Length=61

 Score = 108 bits (273),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 43/53 (81%), Positives = 47/53 (89%), Gaps = 0/53 (0%)

Query  226  VDVEKQCGVILPNGAQCARSLTCKSHSMGAKRAVPGRSLPYDMLLQAYQKKNQ  278
            VDV+KQCGVILPNG  C RSLTCK+HSMGAKRAVPGRS P+D+LL  YQKKNQ
Sbjct  9    VDVDKQCGVILPNGGPCTRSLTCKTHSMGAKRAVPGRSKPFDVLLAEYQKKNQ  61



Lambda      K        H        a         alpha
   0.306    0.126    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 501729466


Query= TCONS_00017593

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396068 pfam01331, mRNA_cap_enzyme, mRNA capping enzyme, catal...  184     4e-57
CDD:461093 pfam03919, mRNA_cap_C, mRNA capping enzyme, C-terminal...  170     5e-53


>CDD:396068 pfam01331, mRNA_cap_enzyme, mRNA capping enzyme, catalytic domain. 
 This family represents the ATP binding catalytic domain 
of the mRNA capping enzyme.
Length=194

 Score = 184 bits (468),  Expect = 4e-57, Method: Composition-based stats.
 Identities = 70/202 (35%), Positives = 102/202 (50%), Gaps = 9/202 (4%)

Query  43   QPVSFAKRHLLELQREDYYVCEKTDGIRCLMYFARGEEDSPVPEIHYLIDRKNDYRYVPG  102
            QPVS ++ ++  L+++ YYV  K DG R +M   R       PE  Y+IDR N+   V  
Sbjct  1    QPVSLSRENIQLLKQKPYYVSWKADGTRYMMLITR------DPEGCYIIDRDNNVYLVEN  54

Query  103  LHFPQPDDETFQSFHVDTLIDGELVNDTYEDGTQQLKFLVFDCLVLDGQKLMHRTLDKRL  162
            L FP+ +DE  +     TL+DGELV DT     QQ ++L++D + ++GQ +M R    RL
Sbjct  55   LRFPRENDEGLEKHLDGTLLDGELVIDTVPGQKQQPRYLIYDIVAINGQTVMQRPFYSRL  114

Query  163  AYFKEKVLKPYNALYKKFPEEKKHRAFAVEDKSTQFSYGIE-MMFREIIPKVKKIHGNDG  221
               K +++KP N   K          F+V  K          ++  + IP +   H +DG
Sbjct  115  FIIKREIIKPRNEEMKTGRIRTDLEPFSVRRKDFWDLEASAKLLGNKFIPNL--SHESDG  172

Query  222  LIFTCRSTPYRIGTDEHILKWK  243
            LIF    TPY  G    +LKWK
Sbjct  173  LIFQPVDTPYVAGRCSDLLKWK  194


>CDD:461093 pfam03919, mRNA_cap_C, mRNA capping enzyme, C-terminal domain. 
 
Length=108

 Score = 170 bits (434),  Expect = 5e-53, Method: Composition-based stats.
 Identities = 72/121 (60%), Positives = 85/121 (70%), Gaps = 13/121 (11%)

Query  248  NTIDFRLRLEFPVLEPDTDDEADGITEPYPDYDAIPICHLFVMLNANEYQHWGEMYVTES  307
            N++DFRL+L FP           G TEP PDYDA PI  LFV      Y+ +GE+YVT+ 
Sbjct  1    NSVDFRLKLRFP-----------GPTEP-PDYDAKPIFELFVWEG-GLYEFFGELYVTDE  47

Query  308  DWEALKALQVPLDDSIVECFKDEQGRWRFHRLRDDKADANHISTVEKVLESIEDRVTEED  367
            +WE LK+L  PLD  IVEC  DE+GRWRF R RDDK++ NHISTVEKVLESI+D VTEED
Sbjct  48   EWEELKSLGEPLDGRIVECSWDEEGRWRFMRFRDDKSNPNHISTVEKVLESIKDGVTEED  107

Query  368  L  368
            L
Sbjct  108  L  108



Lambda      K        H        a         alpha
   0.319    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00011231

Length=797
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461231 pfam04227, Indigoidine_A, Indigoidine synthase A like ...  426     5e-145
CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase. This...  77.4    6e-16 


>CDD:461231 pfam04227, Indigoidine_A, Indigoidine synthase A like protein. 
 Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi 
implicated in pathogenicity and protection from oxidative 
stress. IdgA is involved in indigoidine biosynthesis, 
but its specific function is unknown. The recommended name 
for this protein is now pseudouridine-5'-phosphate glycosidase.
Length=289

 Score = 426 bits (1097),  Expect = 5e-145, Method: Composition-based stats.
 Identities = 171/303 (56%), Positives = 215/303 (71%), Gaps = 14/303 (5%)

Query  41   EIRDAVATGKPVVALESTIYTHGFPYPENVALASLLESVVRVNGGIPATIGILNGVARVG  100
            E+ +A+A GKPVVALESTI THG PYP+N+  A  +E++VR NG +PATI IL+G  +VG
Sbjct  1    EVAEALAAGKPVVALESTIITHGLPYPQNLETALEVEAIVRENGAVPATIAILDGRPKVG  60

Query  101  LSAEELTELASTAEKKDALKVSRRDLGYICGLGMAGRRLHGGTTVSGTMVLAHLAGIKVF  160
            L+ EEL  LA         KVSRRDL Y+  LG     L GGTTV+ TM+LAHLAGI+VF
Sbjct  61   LTDEELERLA----DAGGAKVSRRDLAYVLALG-----LDGGTTVAATMILAHLAGIRVF  111

Query  161  GTGGLGGVHRGGESSMDISADLTELGRTPVAVVSSGCKSFLDIPRTLEFLETEGVCVGTF  220
             TGG+GGVHRG E +MDISADLTELGRTPVAVV +G KS LDIPRTLE+LET+GV V  +
Sbjct  112  ATGGIGGVHRGAEETMDISADLTELGRTPVAVVCAGVKSILDIPRTLEYLETQGVPVVGY  171

Query  221  ADGREGSVDFPAFFSRDSGIKSPRVIRDEAEAAAIIYAQSKLPVSSGIHFANPVPAEQSI  280
                    +FPAF++RDSG KSP  +    EAAAII AQ  L + SG+  ANP+P E ++
Sbjct  172  GTD-----EFPAFYTRDSGFKSPYRVDSPEEAAAIIRAQWALGLGSGVLVANPIPEEHAL  226

Query  281  PKGEMDIIIEEAIRLAEVEGHRGSDNTPFVLAKIKELSGGKSVIANRALVEANVKRATKV  340
             + E+D  IE+A+  AE +G  G   TPF+LA+I EL+GGKS+ AN ALV+ N + A ++
Sbjct  227  DREEIDAAIEQALAEAEEQGITGKAVTPFLLARIAELTGGKSLEANIALVKNNARLAAQI  286

Query  341  AVE  343
            AV 
Sbjct  287  AVA  289


>CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase.  This family 
includes a variety of carbohydrate and pyrimidine kinases.
Length=294

 Score = 77.4 bits (191),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 86/395 (22%), Positives = 130/395 (33%), Gaps = 111/395 (28%)

Query  394  DVLVAGSLAIDLSCDYTPFASESDKITPVPQTSNPAVIGQSLGGVGHNVAIASHYLGSSV  453
             V+V G   IDL  +        + +         + + +  GG G NVA+A   LG  V
Sbjct  1    KVVVIGEANIDLIGN-------VEGLPGE--LVRVSTVEKGPGGKGANVAVALARLGGDV  51

Query  454  LFCSVVGDDLSGRAALSTLQEEGLPTAGVQILPASSGARTAQYVAINDAKRDLVVAMADM  513
             F   VGDD  G   L  L++EG+ T  V I       RT   +   D   +  +     
Sbjct  52   AFIGAVGDDNFGEFLLQELKKEGVDTDYVVIDE---DTRTGTALIEVDGDGERTIVFNRG  108

Query  514  GIMEL-PEHVLDFDGFWDPLIRHTQPQWVVVD----ANWSPAVLARWIAVAKQHGARVAF  568
               +L PE     +   D L        + +          A L   I  AK  G    F
Sbjct  109  AAADLTPEE---LEENEDLL---ENADLLYISGSLPLGLPEATLEELIEAAKNGG---TF  159

Query  569  EPVSTAKSRRLFSKTSEADAVIQPAKAVPN--NAISLAAPNQYELSAMYTTARESGLFEE  626
            +P                D +    +A+        L  PN+ EL A+      +G   +
Sbjct  160  DPNL-------------LDPLGAAREALLELLPLADLLKPNEEELEAL------TGAKLD  200

Query  627  SEGWWRIIDAMGMSATGSRDRLVAMTTAELVDQGIPQQSIQLIPFIPCIITKLGAQGVLV  686
                               +  +A    +L+ +GI             +I  LGA G LV
Sbjct  201  DI-----------------EEALAA-LHKLLAKGIKT-----------VIVTLGADGALV  231

Query  687  TQLLRPGDARLTSPDSAPYILSRASPTDELIGGVYMRLFPSAGVLADREIVSVNGAGDTL  746
                                        E  G V++   P        ++V   GAGD+ 
Sbjct  232  V---------------------------EGDGEVHVPAVPK------VKVVDTTGAGDSF  258

Query  747  LGAVVAGLAKWSGKSVEEVIPLAQEASLRTLKSPG  781
            +G  +AGL    GKS+EE +  A  A+   ++  G
Sbjct  259  VGGFLAGLLA--GKSLEEALRFANAAAALVVQKSG  291



Lambda      K        H        a         alpha
   0.316    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0602    0.140     1.90     42.6     43.6 

Effective search space used: 1022971856


Query= TCONS_00017594

Length=627


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787537860


Query= TCONS_00017595

Length=664
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461231 pfam04227, Indigoidine_A, Indigoidine synthase A like ...  286     1e-92
CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase. This...  77.8    4e-16


>CDD:461231 pfam04227, Indigoidine_A, Indigoidine synthase A like protein. 
 Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi 
implicated in pathogenicity and protection from oxidative 
stress. IdgA is involved in indigoidine biosynthesis, 
but its specific function is unknown. The recommended name 
for this protein is now pseudouridine-5'-phosphate glycosidase.
Length=289

 Score = 286 bits (735),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 119/209 (57%), Positives = 150/209 (72%), Gaps = 5/209 (2%)

Query  2    AGRRLHGGTTVSGTMVLAHLAGIKVFGTGGLGGVHRGGESSMDISADLTELGRTPVAVVS  61
                L GGTTV+ TM+LAHLAGI+VF TGG+GGVHRG E +MDISADLTELGRTPVAVV 
Sbjct  86   LALGLDGGTTVAATMILAHLAGIRVFATGGIGGVHRGAEETMDISADLTELGRTPVAVVC  145

Query  62   SGCKSFLDIPRTLEFLETEGVCVGTFADGREGSVDFPAFFSRDSGIKSPRVIRDEAEAAA  121
            +G KS LDIPRTLE+LET+GV V  +        +FPAF++RDSG KSP  +    EAAA
Sbjct  146  AGVKSILDIPRTLEYLETQGVPVVGYGTD-----EFPAFYTRDSGFKSPYRVDSPEEAAA  200

Query  122  IIYAQSKLPVSSGIHFANPVPAEQSIPKGEMDIIIEEAIRLAEVEGHRGSDNTPFVLAKI  181
            II AQ  L + SG+  ANP+P E ++ + E+D  IE+A+  AE +G  G   TPF+LA+I
Sbjct  201  IIRAQWALGLGSGVLVANPIPEEHALDREEIDAAIEQALAEAEEQGITGKAVTPFLLARI  260

Query  182  KELSGGKSVIANRALVEANVKRATKVAVE  210
             EL+GGKS+ AN ALV+ N + A ++AV 
Sbjct  261  AELTGGKSLEANIALVKNNARLAAQIAVA  289


>CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase.  This family 
includes a variety of carbohydrate and pyrimidine kinases.
Length=294

 Score = 77.8 bits (192),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 88/394 (22%), Positives = 130/394 (33%), Gaps = 112/394 (28%)

Query  261  DVLVAGSLAIDLSCDYTPFASESDKITPVPQTSNPAVIGQSLGGVGHNVAIASHYLGSSV  320
             V+V G   IDL  +        + +         + + +  GG G NVA+A   LG  V
Sbjct  1    KVVVIGEANIDLIGN-------VEGLPGE--LVRVSTVEKGPGGKGANVAVALARLGGDV  51

Query  321  LFCSVVGDDLSGRAALSTLQEEGLPTAGVQILPASSGARTAQYVAINDAKRDLVVAMADM  380
             F   VGDD  G   L  L++EG+ T  V I       RT   +   D   +  +     
Sbjct  52   AFIGAVGDDNFGEFLLQELKKEGVDTDYVVIDE---DTRTGTALIEVDGDGERTIVFNRG  108

Query  381  GIMEL-PEHVLDFDGFWDPLIRHTQPQWVVVD----ANWSPAVLARWIAVAKQHGARVAF  435
               +L PE     +   D L        + +          A L   I  AK  G    F
Sbjct  109  AAADLTPEE---LEENEDLL---ENADLLYISGSLPLGLPEATLEELIEAAKNGG---TF  159

Query  436  EPVSTAKSRRLFSKTSEADAVIQPAKAVPN--NAISLAAPNQYELSAMYTTARESGLFEE  493
            +P                D +    +A+        L  PN+ EL A+      +G   +
Sbjct  160  DPNL-------------LDPLGAAREALLELLPLADLLKPNEEELEAL------TGAKLD  200

Query  494  SEGWWRIIDAMGMSATGSRDRLVAMTTAELVDQGIPQQSIQLIPFIPCIITKLGAQGVLV  553
                               +  +A    +L+ +GI             +I  LGA G LV
Sbjct  201  DI-----------------EEALAA-LHKLLAKGIKT-----------VIVTLGADGALV  231

Query  554  TQLLRPGDARLTSPDSAPYILSRASPTDELIGGVYMRLFPSAGVLADREIVSVNGAGDTL  613
                                        E  G V++   P        ++V   GAGD+ 
Sbjct  232  V---------------------------EGDGEVHVPAVPK------VKVVDTTGAGDSF  258

Query  614  LGAVVAGLAKWSGKSVEEVIPLAQE-ASLRTLKS  646
            +G  +AGL    GKS+EE +  A   A+L   KS
Sbjct  259  VGGFLAGLLA--GKSLEEALRFANAAAALVVQKS  290



Lambda      K        H        a         alpha
   0.316    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 842105090


Query= TCONS_00011233

Length=627


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787537860


Query= TCONS_00011232

Length=627


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787537860


Query= TCONS_00017597

Length=627


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787537860


Query= TCONS_00017598

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461231 pfam04227, Indigoidine_A, Indigoidine synthase A like ...  331     1e-115


>CDD:461231 pfam04227, Indigoidine_A, Indigoidine synthase A like protein. 
 Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi 
implicated in pathogenicity and protection from oxidative 
stress. IdgA is involved in indigoidine biosynthesis, 
but its specific function is unknown. The recommended name 
for this protein is now pseudouridine-5'-phosphate glycosidase.
Length=289

 Score = 331 bits (852),  Expect = 1e-115, Method: Composition-based stats.
 Identities = 135/228 (59%), Positives = 161/228 (71%), Gaps = 16/228 (7%)

Query  41   EIRDAVATGKPVVALESTIYTHGFPYPENVALASLLESVVRVNGGIPATIGILNGVARVG  100
            E+ +A+A GKPVVALESTI THG PYP+N+  A  +E++VR NG +PATI IL+G  +VG
Sbjct  1    EVAEALAAGKPVVALESTIITHGLPYPQNLETALEVEAIVRENGAVPATIAILDGRPKVG  60

Query  101  LSAEELTELASTAEKKDALKVSRRDLGYICGLGMAGRRLHGGTTVSGTMVLAHLAGIKVF  160
            L+ EEL  LA         KVSRRDL Y+  LG     L GGTTV+ TM+LAHLAGI+VF
Sbjct  61   LTDEELERLA----DAGGAKVSRRDLAYVLALG-----LDGGTTVAATMILAHLAGIRVF  111

Query  161  GTGGLGGVHRGGESSMDISADLTELGRTPVAVVSSGCKSFLDIPRTLEFLETEGVCVGTF  220
             TGG+GGVHRG E +MDISADLTELGRTPVAVV +G KS LDIPRTLE+LET+GV V  +
Sbjct  112  ATGGIGGVHRGAEETMDISADLTELGRTPVAVVCAGVKSILDIPRTLEYLETQGVPVVGY  171

Query  221  ADGREGSVDFPAFFSRDSGIKSPRVIRDEAEAAAII--CKEPGLSSSV  266
                    +FPAF++RDSG KSP  +    EAAAII      GL S V
Sbjct  172  GTD-----EFPAFYTRDSGFKSPYRVDSPEEAAAIIRAQWALGLGSGV  214



Lambda      K        H        a         alpha
   0.318    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00017599

Length=627


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787537860


Query= TCONS_00011234

Length=768
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461231 pfam04227, Indigoidine_A, Indigoidine synthase A like ...  425     3e-145
CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase. This...  77.0    7e-16 


>CDD:461231 pfam04227, Indigoidine_A, Indigoidine synthase A like protein. 
 Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi 
implicated in pathogenicity and protection from oxidative 
stress. IdgA is involved in indigoidine biosynthesis, 
but its specific function is unknown. The recommended name 
for this protein is now pseudouridine-5'-phosphate glycosidase.
Length=289

 Score = 425 bits (1096),  Expect = 3e-145, Method: Composition-based stats.
 Identities = 171/303 (56%), Positives = 215/303 (71%), Gaps = 14/303 (5%)

Query  41   EIRDAVATGKPVVALESTIYTHGFPYPENVALASLLESVVRVNGGIPATIGILNGVARVG  100
            E+ +A+A GKPVVALESTI THG PYP+N+  A  +E++VR NG +PATI IL+G  +VG
Sbjct  1    EVAEALAAGKPVVALESTIITHGLPYPQNLETALEVEAIVRENGAVPATIAILDGRPKVG  60

Query  101  LSAEELTELASTAEKKDALKVSRRDLGYICGLGMAGRRLHGGTTVSGTMVLAHLAGIKVF  160
            L+ EEL  LA         KVSRRDL Y+  LG     L GGTTV+ TM+LAHLAGI+VF
Sbjct  61   LTDEELERLA----DAGGAKVSRRDLAYVLALG-----LDGGTTVAATMILAHLAGIRVF  111

Query  161  GTGGLGGVHRGGESSMDISADLTELGRTPVAVVSSGCKSFLDIPRTLEFLETEGVCVGTF  220
             TGG+GGVHRG E +MDISADLTELGRTPVAVV +G KS LDIPRTLE+LET+GV V  +
Sbjct  112  ATGGIGGVHRGAEETMDISADLTELGRTPVAVVCAGVKSILDIPRTLEYLETQGVPVVGY  171

Query  221  ADGREGSVDFPAFFSRDSGIKSPRVIRDEAEAAAIIYAQSKLPVSSGIHFANPVPAEQSI  280
                    +FPAF++RDSG KSP  +    EAAAII AQ  L + SG+  ANP+P E ++
Sbjct  172  GTD-----EFPAFYTRDSGFKSPYRVDSPEEAAAIIRAQWALGLGSGVLVANPIPEEHAL  226

Query  281  PKGEMDIIIEEAIRLAEVEGHRGSDNTPFVLAKIKELSGGKSVIANRALVEANVKRATKV  340
             + E+D  IE+A+  AE +G  G   TPF+LA+I EL+GGKS+ AN ALV+ N + A ++
Sbjct  227  DREEIDAAIEQALAEAEEQGITGKAVTPFLLARIAELTGGKSLEANIALVKNNARLAAQI  286

Query  341  AVE  343
            AV 
Sbjct  287  AVA  289


>CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase.  This family 
includes a variety of carbohydrate and pyrimidine kinases.
Length=294

 Score = 77.0 bits (190),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 86/393 (22%), Positives = 126/393 (32%), Gaps = 107/393 (27%)

Query  365  DVLVAGSLAIDLSCDYTPFASESDKITPVPQTSNPAVIGQSLGGVGHNVAIASHYLGSSV  424
             V+V G   IDL  +        + +         + + +  GG G NVA+A   LG  V
Sbjct  1    KVVVIGEANIDLIGN-------VEGLPGE--LVRVSTVEKGPGGKGANVAVALARLGGDV  51

Query  425  LFCSVVGDDLSGRAALSTLQEEGLPTAGVQILPASSGARTAQYVAINDAKRDLVVAMADM  484
             F   VGDD  G   L  L++EG+ T  V I       RT   +   D   +  +     
Sbjct  52   AFIGAVGDDNFGEFLLQELKKEGVDTDYVVIDE---DTRTGTALIEVDGDGERTIVFNRG  108

Query  485  GIMEL-PEHVLDFDGFWDPLIRHTQPQWVVVD----ANWSPAVLARWIAVAKQHGARVAF  539
               +L PE     +   D L        + +          A L   I  AK  G     
Sbjct  109  AAADLTPEE---LEENEDLL---ENADLLYISGSLPLGLPEATLEELIEAAKNGGTFD--  160

Query  540  EPVSTAKSRRLFSKTSEADAVIQPAKAVPNNAISLAAPNQYELSAMYTTARESGLFEESE  599
                      L      A   +   + +P     L  PN+ EL A+              
Sbjct  161  --------PNLLDPLGAAREALL--ELLP--LADLLKPNEEELEAL--------------  194

Query  600  GWWRIIDAMGMSATGSRDRLVAMTTAELVDQGIPQQSIQLIPFIPCIITKLGAQGVLVTQ  659
                     G       + L A    +L+ +GI             +I  LGA G LV  
Sbjct  195  --------TGAKLDDIEEALAA--LHKLLAKGIKT-----------VIVTLGADGALVV-  232

Query  660  LLRPGDARLTSPDSAPYILSRASPTDELIGGVYMRLFPSAGVLADREIVSVNGAGDTLLG  719
                                      E  G V++   P        ++V   GAGD+ +G
Sbjct  233  --------------------------EGDGEVHVPAVPK------VKVVDTTGAGDSFVG  260

Query  720  AVVAGLAKWSGKSVEEVIPLAQEASLRTLKSPG  752
              +AGL    GKS+EE +  A  A+   ++  G
Sbjct  261  GFLAGLLA--GKSLEEALRFANAAAALVVQKSG  291



Lambda      K        H        a         alpha
   0.317    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 980772448


Query= TCONS_00011235

Length=627


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787537860


Query= TCONS_00017601

Length=112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461446 pfam04825, Rad21_Rec8_N, N-terminus of Rad21 / Rec8 li...  159     9e-53


>CDD:461446 pfam04825, Rad21_Rec8_N, N-terminus of Rad21 / Rec8 like protein. 
 This family represents a conserved N-terminal region found 
in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. 
Members of this family mediate sister chromatid cohesion 
during mitosis and meiosis, as part of the cohesin complex. 
Cohesion is necessary for homologous recombination (including 
double-strand break repair) and correct chromatid segregation. 
These proteins may also be involved in chromosome condensation. 
Dissociation at the metaphase to anaphase transition 
causes loss of cohesion and chromatid segregation.
Length=104

 Score = 159 bits (404),  Expect = 9e-53, Method: Composition-based stats.
 Identities = 60/88 (68%), Positives = 70/88 (80%), Gaps = 1/88 (1%)

Query  1   MFYSETLLSKTGPLARVWLSANLERKLSKSHILQSDIESSVNAIVDQGQAPMALRLSGQL  60
           MFYS  +LSK GPLA VWL+A L +KLSK  IL+ DI  +   I++   AP+ALRLSGQL
Sbjct  1   MFYSHEILSKKGPLATVWLAATLGKKLSKKQILEVDIPKACETIINPE-APLALRLSGQL  59

Query  61  LLGVVRIYSRKARYLLDDCNEALMKIKM  88
           LLGVVRIYSRKA+YLLDDCNEAL+KIK 
Sbjct  60  LLGVVRIYSRKAKYLLDDCNEALVKIKK  87



Lambda      K        H        a         alpha
   0.322    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00011236

Length=1061
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  175     6e-51
CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      146     6e-41
CDD:459907 pfam00690, Cation_ATPase_N, Cation transporter/ATPase,...  78.4    2e-18
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  65.7    1e-13
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  62.2    2e-11


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 175 bits (446),  Expect = 6e-51, Method: Composition-based stats.
 Identities = 68/185 (37%), Positives = 99/185 (54%), Gaps = 13/185 (7%)

Query  861   PLNAMQILWINILMDGPPAQSLGVEPVDPTIMNRPPRSRTARVLTRPLIQRVLTSAFMIM  920
             PL  +QILWIN++ DG PA +LG EP +P +M RPPR     + +R +++R+L    +I 
Sbjct  3     PLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLLIA  62

Query  921   LGTLAIY-VYEMGDADDLSTPGKRSRVVTAHDTTMTFTCFVLFDMFNALTCRSESKSVLR  979
             + TL ++ +  +G     S              TM F   VL  +FNAL  RS  +S+ +
Sbjct  63    ILTLLVFFLGLLGFGISESQNA----------QTMAFNTLVLSQLFNALNARSLRRSLFK  112

Query  980   GELPLFGNKMFNYAVLGSLFGQACVIYVPFFQRIFQTEPLNAAHLLKLLCVSSTVFWVDE  1039
               + LF NK+   A+L SL  Q  +IYVP  Q +F T PL+    L +L ++  V  V E
Sbjct  113   --IGLFSNKLLLLAILLSLLLQLLIIYVPPLQAVFGTTPLSLEQWLIVLLLALVVLLVVE  170

Query  1040  GRKYL  1044
              RK L
Sbjct  171   LRKLL  175


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 146 bits (372),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 64/208 (31%), Positives = 98/208 (47%), Gaps = 43/208 (21%)

Query  199  TVLASELVAGDLVLFTTGDRIPADIRITAATDLTIDESNLTGENEPVAKYPEALRSTKAA  258
             V A ELV GD+VL   G+R+PAD RI   +   +DES LTGE+ PV K           
Sbjct  17   EVPADELVPGDIVLLKPGERVPADGRIVEGSAS-VDESLLTGESLPVEK-----------  64

Query  259  VSHSPKIVSPPRSPFYDAPASGAVGADIRLNEQHNIAFMGTLVRSGYGQGIVIGTGAKTE  318
                                           ++ ++ + GT+V SG  + +V  TG  TE
Sbjct  65   -------------------------------KKGDMVYSGTVVVSGSAKAVVTATGEDTE  93

Query  319  FGSISVSLQEIESPRTPLQLSMDRLGQELSYISFGVIALIVVIGLVQGRKLLEMFTIGVS  378
             G I+  ++E +S +TPLQ  +DRLG+  S +   +   + ++ L  G   L      ++
Sbjct  94   LGRIARLVEEAKSKKTPLQRLLDRLGKYFSPVVLLIALAVFLLWLFVGGPPLRALLRALA  153

Query  379  LAVAAIPEGLPIIVTVTLALGVLRMAKR  406
            + VAA P  LP+   + LA+G  R+AK+
Sbjct  154  VLVAACPCALPLATPLALAVGARRLAKK  181


>CDD:459907 pfam00690, Cation_ATPase_N, Cation transporter/ATPase, N-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport.
Length=68

 Score = 78.4 bits (194),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 29/53 (55%), Positives = 36/53 (68%), Gaps = 0/53 (0%)

Query  40  LLGPEETAERLQTSLLHGLTPAEAEIRLLRDGPNELPHEEPEPLWLRFLKQFK  92
            L  EE  ++L T L  GLT AEAE RL + GPNELP ++P+ LW  FL+QFK
Sbjct  3   ALSVEEVLKKLGTDLEKGLTEAEAEKRLKKYGPNELPEKKPKSLWKLFLRQFK  55


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 65.7 bits (161),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 39/80 (49%), Gaps = 10/80 (13%)

Query  515  VGQPTDVAILDLLDTFGED--DLRDRISRRVAETPFSSERKWMGVIIGSAQNDAPSFTGA  572
            VG PT+ A+L   +  G D  +LR     RVAE PF+S+RK M  +     +        
Sbjct  20   VGDPTESALLVFAEKMGIDVEELRKD-YPRVAEIPFNSDRKRMSTVHKLPDDG-------  71

Query  573  NNVAYIKGALEQVLTRCDTY  592
                ++KGA E +L RC T 
Sbjct  72   KYRLFVKGAPEIILDRCTTI  91


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 62.2 bits (151),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/116 (22%), Positives = 41/116 (35%), Gaps = 20/116 (17%)

Query  674  NDPPRKDVHKSIRRLMAGGVRVIMITGDAESTAVAIAKKLGMPVRDSPGSRPVLTGQDLD  733
                     ++++ L   G++V ++TGD    A A+ + LG+                  
Sbjct  96   ELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFD-------------  142

Query  734  RMSTADLAQAISTTSIFARTSPEHKMKIVRALQSRGDVVAMTGDGVNDAPALKKAD  789
                              +  PE  +  +  L  + + V M GDGVND PA K A 
Sbjct  143  -------VVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMVGDGVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.318    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1366320340


Query= TCONS_00017602

Length=898
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      146     7e-41
CDD:459907 pfam00690, Cation_ATPase_N, Cation transporter/ATPase,...  78.4    2e-18
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  65.7    8e-14
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  61.8    2e-11


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 146 bits (371),  Expect = 7e-41, Method: Composition-based stats.
 Identities = 64/208 (31%), Positives = 98/208 (47%), Gaps = 43/208 (21%)

Query  199  TVLASELVAGDLVLFTTGDRIPADIRITAATDLTIDESNLTGENEPVAKYPEALRSTKAA  258
             V A ELV GD+VL   G+R+PAD RI   +   +DES LTGE+ PV K           
Sbjct  17   EVPADELVPGDIVLLKPGERVPADGRIVEGSAS-VDESLLTGESLPVEK-----------  64

Query  259  VSHSPKIVSPPRSPFYDAPASGAVGADIRLNEQHNIAFMGTLVRSGYGQGIVIGTGAKTE  318
                                           ++ ++ + GT+V SG  + +V  TG  TE
Sbjct  65   -------------------------------KKGDMVYSGTVVVSGSAKAVVTATGEDTE  93

Query  319  FGSISVSLQEIESPRTPLQLSMDRLGQELSYISFGVIALIVVIGLVQGRKLLEMFTIGVS  378
             G I+  ++E +S +TPLQ  +DRLG+  S +   +   + ++ L  G   L      ++
Sbjct  94   LGRIARLVEEAKSKKTPLQRLLDRLGKYFSPVVLLIALAVFLLWLFVGGPPLRALLRALA  153

Query  379  LAVAAIPEGLPIIVTVTLALGVLRMAKR  406
            + VAA P  LP+   + LA+G  R+AK+
Sbjct  154  VLVAACPCALPLATPLALAVGARRLAKK  181


>CDD:459907 pfam00690, Cation_ATPase_N, Cation transporter/ATPase, N-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport.
Length=68

 Score = 78.4 bits (194),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 29/53 (55%), Positives = 36/53 (68%), Gaps = 0/53 (0%)

Query  40  LLGPEETAERLQTSLLHGLTPAEAEIRLLRDGPNELPHEEPEPLWLRFLKQFK  92
            L  EE  ++L T L  GLT AEAE RL + GPNELP ++P+ LW  FL+QFK
Sbjct  3   ALSVEEVLKKLGTDLEKGLTEAEAEKRLKKYGPNELPEKKPKSLWKLFLRQFK  55


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 65.7 bits (161),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 39/80 (49%), Gaps = 10/80 (13%)

Query  515  VGQPTDVAILDLLDTFGED--DLRDRISRRVAETPFSSERKWMGVIIGSAQNDAPSFTGA  572
            VG PT+ A+L   +  G D  +LR     RVAE PF+S+RK M  +     +        
Sbjct  20   VGDPTESALLVFAEKMGIDVEELRKD-YPRVAEIPFNSDRKRMSTVHKLPDDG-------  71

Query  573  NNVAYIKGALEQVLTRCDTY  592
                ++KGA E +L RC T 
Sbjct  72   KYRLFVKGAPEIILDRCTTI  91


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 61.8 bits (150),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/116 (22%), Positives = 41/116 (35%), Gaps = 20/116 (17%)

Query  674  NDPPRKDVHKSIRRLMAGGVRVIMITGDAESTAVAIAKKLGMPVRDSPGSRPVLTGQDLD  733
                     ++++ L   G++V ++TGD    A A+ + LG+                  
Sbjct  96   ELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFD-------------  142

Query  734  RMSTADLAQAISTTSIFARTSPEHKMKIVRALQSRGDVVAMTGDGVNDAPALKKAD  789
                              +  PE  +  +  L  + + V M GDGVND PA K A 
Sbjct  143  -------VVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMVGDGVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.317    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1152717742


Query= TCONS_00017603

Length=953
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  175     7e-51
CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      145     2e-40
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  65.7    9e-14
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  61.8    2e-11


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 175 bits (445),  Expect = 7e-51, Method: Composition-based stats.
 Identities = 68/185 (37%), Positives = 99/185 (54%), Gaps = 13/185 (7%)

Query  753  PLNAMQILWINILMDGPPAQSLGVEPVDPTIMNRPPRSRTARVLTRPLIQRVLTSAFMIM  812
            PL  +QILWIN++ DG PA +LG EP +P +M RPPR     + +R +++R+L    +I 
Sbjct  3    PLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLLIA  62

Query  813  LGTLAIY-VYEMGDADDLSTPGKRSRVVTAHDTTMTFTCFVLFDMFNALTCRSESKSVLR  871
            + TL ++ +  +G     S              TM F   VL  +FNAL  RS  +S+ +
Sbjct  63   ILTLLVFFLGLLGFGISESQNA----------QTMAFNTLVLSQLFNALNARSLRRSLFK  112

Query  872  GELPLFGNKMFNYAVLGSLFGQACVIYVPFFQRIFQTEPLNAAHLLKLLCVSSTVFWVDE  931
              + LF NK+   A+L SL  Q  +IYVP  Q +F T PL+    L +L ++  V  V E
Sbjct  113  --IGLFSNKLLLLAILLSLLLQLLIIYVPPLQAVFGTTPLSLEQWLIVLLLALVVLLVVE  170

Query  932  GRKYL  936
             RK L
Sbjct  171  LRKLL  175


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 145 bits (368),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 64/208 (31%), Positives = 98/208 (47%), Gaps = 43/208 (21%)

Query  91   TVLASELVAGDLVLFTTGDRIPADIRITAATDLTIDESNLTGENEPVAKYPEALRSTKAA  150
             V A ELV GD+VL   G+R+PAD RI   +   +DES LTGE+ PV K           
Sbjct  17   EVPADELVPGDIVLLKPGERVPADGRIVEGSAS-VDESLLTGESLPVEK-----------  64

Query  151  VSHSPKIVSPPRSPFYDAPASGAVGADIRLNEQHNIAFMGTLVRSGYGQGIVIGTGAKTE  210
                                           ++ ++ + GT+V SG  + +V  TG  TE
Sbjct  65   -------------------------------KKGDMVYSGTVVVSGSAKAVVTATGEDTE  93

Query  211  FGSISVSLQEIESPRTPLQLSMDRLGQELSYISFGVIALIVVIGLVQGRKLLEMFTIGVS  270
             G I+  ++E +S +TPLQ  +DRLG+  S +   +   + ++ L  G   L      ++
Sbjct  94   LGRIARLVEEAKSKKTPLQRLLDRLGKYFSPVVLLIALAVFLLWLFVGGPPLRALLRALA  153

Query  271  LAVAAIPEGLPIIVTVTLALGVLRMAKR  298
            + VAA P  LP+   + LA+G  R+AK+
Sbjct  154  VLVAACPCALPLATPLALAVGARRLAKK  181


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 65.7 bits (161),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 39/80 (49%), Gaps = 10/80 (13%)

Query  407  VGQPTDVAILDLLDTFGED--DLRDRISRRVAETPFSSERKWMGVIIGSAQNDAPSFTGA  464
            VG PT+ A+L   +  G D  +LR     RVAE PF+S+RK M  +     +        
Sbjct  20   VGDPTESALLVFAEKMGIDVEELRKD-YPRVAEIPFNSDRKRMSTVHKLPDDG-------  71

Query  465  NNVAYIKGALEQVLTRCDTY  484
                ++KGA E +L RC T 
Sbjct  72   KYRLFVKGAPEIILDRCTTI  91


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 61.8 bits (150),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/116 (22%), Positives = 41/116 (35%), Gaps = 20/116 (17%)

Query  566  NDPPRKDVHKSIRRLMAGGVRVIMITGDAESTAVAIAKKLGMPVRDSPGSRPVLTGQDLD  625
                     ++++ L   G++V ++TGD    A A+ + LG+                  
Sbjct  96   ELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFD-------------  142

Query  626  RMSTADLAQAISTTSIFARTSPEHKMKIVRALQSRGDVVAMTGDGVNDAPALKKAD  681
                              +  PE  +  +  L  + + V M GDGVND PA K A 
Sbjct  143  -------VVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMVGDGVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.319    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1213405732


Query= TCONS_00011237

Length=905
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      146     8e-41
CDD:459907 pfam00690, Cation_ATPase_N, Cation transporter/ATPase,...  78.4    2e-18
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  65.7    8e-14
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  62.2    2e-11


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 146 bits (371),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 64/208 (31%), Positives = 98/208 (47%), Gaps = 43/208 (21%)

Query  199  TVLASELVAGDLVLFTTGDRIPADIRITAATDLTIDESNLTGENEPVAKYPEALRSTKAA  258
             V A ELV GD+VL   G+R+PAD RI   +   +DES LTGE+ PV K           
Sbjct  17   EVPADELVPGDIVLLKPGERVPADGRIVEGSAS-VDESLLTGESLPVEK-----------  64

Query  259  VSHSPKIVSPPRSPFYDAPASGAVGADIRLNEQHNIAFMGTLVRSGYGQGIVIGTGAKTE  318
                                           ++ ++ + GT+V SG  + +V  TG  TE
Sbjct  65   -------------------------------KKGDMVYSGTVVVSGSAKAVVTATGEDTE  93

Query  319  FGSISVSLQEIESPRTPLQLSMDRLGQELSYISFGVIALIVVIGLVQGRKLLEMFTIGVS  378
             G I+  ++E +S +TPLQ  +DRLG+  S +   +   + ++ L  G   L      ++
Sbjct  94   LGRIARLVEEAKSKKTPLQRLLDRLGKYFSPVVLLIALAVFLLWLFVGGPPLRALLRALA  153

Query  379  LAVAAIPEGLPIIVTVTLALGVLRMAKR  406
            + VAA P  LP+   + LA+G  R+AK+
Sbjct  154  VLVAACPCALPLATPLALAVGARRLAKK  181


>CDD:459907 pfam00690, Cation_ATPase_N, Cation transporter/ATPase, N-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport.
Length=68

 Score = 78.4 bits (194),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 29/53 (55%), Positives = 36/53 (68%), Gaps = 0/53 (0%)

Query  40  LLGPEETAERLQTSLLHGLTPAEAEIRLLRDGPNELPHEEPEPLWLRFLKQFK  92
            L  EE  ++L T L  GLT AEAE RL + GPNELP ++P+ LW  FL+QFK
Sbjct  3   ALSVEEVLKKLGTDLEKGLTEAEAEKRLKKYGPNELPEKKPKSLWKLFLRQFK  55


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 65.7 bits (161),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 39/80 (49%), Gaps = 10/80 (13%)

Query  515  VGQPTDVAILDLLDTFGED--DLRDRISRRVAETPFSSERKWMGVIIGSAQNDAPSFTGA  572
            VG PT+ A+L   +  G D  +LR     RVAE PF+S+RK M  +     +        
Sbjct  20   VGDPTESALLVFAEKMGIDVEELRKD-YPRVAEIPFNSDRKRMSTVHKLPDDG-------  71

Query  573  NNVAYIKGALEQVLTRCDTY  592
                ++KGA E +L RC T 
Sbjct  72   KYRLFVKGAPEIILDRCTTI  91


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 62.2 bits (151),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/116 (22%), Positives = 41/116 (35%), Gaps = 20/116 (17%)

Query  674  NDPPRKDVHKSIRRLMAGGVRVIMITGDAESTAVAIAKKLGMPVRDSPGSRPVLTGQDLD  733
                     ++++ L   G++V ++TGD    A A+ + LG+                  
Sbjct  96   ELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFD-------------  142

Query  734  RMSTADLAQAISTTSIFARTSPEHKMKIVRALQSRGDVVAMTGDGVNDAPALKKAD  789
                              +  PE  +  +  L  + + V M GDGVND PA K A 
Sbjct  143  -------VVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMVGDGVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.317    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1162766340


Query= TCONS_00011238

Length=1061
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  175     6e-51
CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      146     6e-41
CDD:459907 pfam00690, Cation_ATPase_N, Cation transporter/ATPase,...  78.4    2e-18
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  65.7    1e-13
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  62.2    2e-11


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 175 bits (446),  Expect = 6e-51, Method: Composition-based stats.
 Identities = 68/185 (37%), Positives = 99/185 (54%), Gaps = 13/185 (7%)

Query  861   PLNAMQILWINILMDGPPAQSLGVEPVDPTIMNRPPRSRTARVLTRPLIQRVLTSAFMIM  920
             PL  +QILWIN++ DG PA +LG EP +P +M RPPR     + +R +++R+L    +I 
Sbjct  3     PLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLLIA  62

Query  921   LGTLAIY-VYEMGDADDLSTPGKRSRVVTAHDTTMTFTCFVLFDMFNALTCRSESKSVLR  979
             + TL ++ +  +G     S              TM F   VL  +FNAL  RS  +S+ +
Sbjct  63    ILTLLVFFLGLLGFGISESQNA----------QTMAFNTLVLSQLFNALNARSLRRSLFK  112

Query  980   GELPLFGNKMFNYAVLGSLFGQACVIYVPFFQRIFQTEPLNAAHLLKLLCVSSTVFWVDE  1039
               + LF NK+   A+L SL  Q  +IYVP  Q +F T PL+    L +L ++  V  V E
Sbjct  113   --IGLFSNKLLLLAILLSLLLQLLIIYVPPLQAVFGTTPLSLEQWLIVLLLALVVLLVVE  170

Query  1040  GRKYL  1044
              RK L
Sbjct  171   LRKLL  175


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 146 bits (372),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 64/208 (31%), Positives = 98/208 (47%), Gaps = 43/208 (21%)

Query  199  TVLASELVAGDLVLFTTGDRIPADIRITAATDLTIDESNLTGENEPVAKYPEALRSTKAA  258
             V A ELV GD+VL   G+R+PAD RI   +   +DES LTGE+ PV K           
Sbjct  17   EVPADELVPGDIVLLKPGERVPADGRIVEGSAS-VDESLLTGESLPVEK-----------  64

Query  259  VSHSPKIVSPPRSPFYDAPASGAVGADIRLNEQHNIAFMGTLVRSGYGQGIVIGTGAKTE  318
                                           ++ ++ + GT+V SG  + +V  TG  TE
Sbjct  65   -------------------------------KKGDMVYSGTVVVSGSAKAVVTATGEDTE  93

Query  319  FGSISVSLQEIESPRTPLQLSMDRLGQELSYISFGVIALIVVIGLVQGRKLLEMFTIGVS  378
             G I+  ++E +S +TPLQ  +DRLG+  S +   +   + ++ L  G   L      ++
Sbjct  94   LGRIARLVEEAKSKKTPLQRLLDRLGKYFSPVVLLIALAVFLLWLFVGGPPLRALLRALA  153

Query  379  LAVAAIPEGLPIIVTVTLALGVLRMAKR  406
            + VAA P  LP+   + LA+G  R+AK+
Sbjct  154  VLVAACPCALPLATPLALAVGARRLAKK  181


>CDD:459907 pfam00690, Cation_ATPase_N, Cation transporter/ATPase, N-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport.
Length=68

 Score = 78.4 bits (194),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 29/53 (55%), Positives = 36/53 (68%), Gaps = 0/53 (0%)

Query  40  LLGPEETAERLQTSLLHGLTPAEAEIRLLRDGPNELPHEEPEPLWLRFLKQFK  92
            L  EE  ++L T L  GLT AEAE RL + GPNELP ++P+ LW  FL+QFK
Sbjct  3   ALSVEEVLKKLGTDLEKGLTEAEAEKRLKKYGPNELPEKKPKSLWKLFLRQFK  55


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 65.7 bits (161),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 39/80 (49%), Gaps = 10/80 (13%)

Query  515  VGQPTDVAILDLLDTFGED--DLRDRISRRVAETPFSSERKWMGVIIGSAQNDAPSFTGA  572
            VG PT+ A+L   +  G D  +LR     RVAE PF+S+RK M  +     +        
Sbjct  20   VGDPTESALLVFAEKMGIDVEELRKD-YPRVAEIPFNSDRKRMSTVHKLPDDG-------  71

Query  573  NNVAYIKGALEQVLTRCDTY  592
                ++KGA E +L RC T 
Sbjct  72   KYRLFVKGAPEIILDRCTTI  91


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 62.2 bits (151),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/116 (22%), Positives = 41/116 (35%), Gaps = 20/116 (17%)

Query  674  NDPPRKDVHKSIRRLMAGGVRVIMITGDAESTAVAIAKKLGMPVRDSPGSRPVLTGQDLD  733
                     ++++ L   G++V ++TGD    A A+ + LG+                  
Sbjct  96   ELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFD-------------  142

Query  734  RMSTADLAQAISTTSIFARTSPEHKMKIVRALQSRGDVVAMTGDGVNDAPALKKAD  789
                              +  PE  +  +  L  + + V M GDGVND PA K A 
Sbjct  143  -------VVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMVGDGVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.318    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0737    0.140     1.90     42.6     43.6 

Effective search space used: 1366320340


Query= TCONS_00011239

Length=1061
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  175     6e-51
CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      146     6e-41
CDD:459907 pfam00690, Cation_ATPase_N, Cation transporter/ATPase,...  78.4    2e-18
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  65.7    1e-13
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  62.2    2e-11


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 175 bits (446),  Expect = 6e-51, Method: Composition-based stats.
 Identities = 68/185 (37%), Positives = 99/185 (54%), Gaps = 13/185 (7%)

Query  861   PLNAMQILWINILMDGPPAQSLGVEPVDPTIMNRPPRSRTARVLTRPLIQRVLTSAFMIM  920
             PL  +QILWIN++ DG PA +LG EP +P +M RPPR     + +R +++R+L    +I 
Sbjct  3     PLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLLIA  62

Query  921   LGTLAIY-VYEMGDADDLSTPGKRSRVVTAHDTTMTFTCFVLFDMFNALTCRSESKSVLR  979
             + TL ++ +  +G     S              TM F   VL  +FNAL  RS  +S+ +
Sbjct  63    ILTLLVFFLGLLGFGISESQNA----------QTMAFNTLVLSQLFNALNARSLRRSLFK  112

Query  980   GELPLFGNKMFNYAVLGSLFGQACVIYVPFFQRIFQTEPLNAAHLLKLLCVSSTVFWVDE  1039
               + LF NK+   A+L SL  Q  +IYVP  Q +F T PL+    L +L ++  V  V E
Sbjct  113   --IGLFSNKLLLLAILLSLLLQLLIIYVPPLQAVFGTTPLSLEQWLIVLLLALVVLLVVE  170

Query  1040  GRKYL  1044
              RK L
Sbjct  171   LRKLL  175


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 146 bits (372),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 64/208 (31%), Positives = 98/208 (47%), Gaps = 43/208 (21%)

Query  199  TVLASELVAGDLVLFTTGDRIPADIRITAATDLTIDESNLTGENEPVAKYPEALRSTKAA  258
             V A ELV GD+VL   G+R+PAD RI   +   +DES LTGE+ PV K           
Sbjct  17   EVPADELVPGDIVLLKPGERVPADGRIVEGSAS-VDESLLTGESLPVEK-----------  64

Query  259  VSHSPKIVSPPRSPFYDAPASGAVGADIRLNEQHNIAFMGTLVRSGYGQGIVIGTGAKTE  318
                                           ++ ++ + GT+V SG  + +V  TG  TE
Sbjct  65   -------------------------------KKGDMVYSGTVVVSGSAKAVVTATGEDTE  93

Query  319  FGSISVSLQEIESPRTPLQLSMDRLGQELSYISFGVIALIVVIGLVQGRKLLEMFTIGVS  378
             G I+  ++E +S +TPLQ  +DRLG+  S +   +   + ++ L  G   L      ++
Sbjct  94   LGRIARLVEEAKSKKTPLQRLLDRLGKYFSPVVLLIALAVFLLWLFVGGPPLRALLRALA  153

Query  379  LAVAAIPEGLPIIVTVTLALGVLRMAKR  406
            + VAA P  LP+   + LA+G  R+AK+
Sbjct  154  VLVAACPCALPLATPLALAVGARRLAKK  181


>CDD:459907 pfam00690, Cation_ATPase_N, Cation transporter/ATPase, N-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport.
Length=68

 Score = 78.4 bits (194),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 29/53 (55%), Positives = 36/53 (68%), Gaps = 0/53 (0%)

Query  40  LLGPEETAERLQTSLLHGLTPAEAEIRLLRDGPNELPHEEPEPLWLRFLKQFK  92
            L  EE  ++L T L  GLT AEAE RL + GPNELP ++P+ LW  FL+QFK
Sbjct  3   ALSVEEVLKKLGTDLEKGLTEAEAEKRLKKYGPNELPEKKPKSLWKLFLRQFK  55


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 65.7 bits (161),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 39/80 (49%), Gaps = 10/80 (13%)

Query  515  VGQPTDVAILDLLDTFGED--DLRDRISRRVAETPFSSERKWMGVIIGSAQNDAPSFTGA  572
            VG PT+ A+L   +  G D  +LR     RVAE PF+S+RK M  +     +        
Sbjct  20   VGDPTESALLVFAEKMGIDVEELRKD-YPRVAEIPFNSDRKRMSTVHKLPDDG-------  71

Query  573  NNVAYIKGALEQVLTRCDTY  592
                ++KGA E +L RC T 
Sbjct  72   KYRLFVKGAPEIILDRCTTI  91


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 62.2 bits (151),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/116 (22%), Positives = 41/116 (35%), Gaps = 20/116 (17%)

Query  674  NDPPRKDVHKSIRRLMAGGVRVIMITGDAESTAVAIAKKLGMPVRDSPGSRPVLTGQDLD  733
                     ++++ L   G++V ++TGD    A A+ + LG+                  
Sbjct  96   ELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFD-------------  142

Query  734  RMSTADLAQAISTTSIFARTSPEHKMKIVRALQSRGDVVAMTGDGVNDAPALKKAD  789
                              +  PE  +  +  L  + + V M GDGVND PA K A 
Sbjct  143  -------VVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMVGDGVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.318    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1366320340


Query= TCONS_00011240

Length=797
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      144     2e-40
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  65.7    7e-14
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  61.4    3e-11


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 144 bits (366),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 64/208 (31%), Positives = 98/208 (47%), Gaps = 43/208 (21%)

Query  91   TVLASELVAGDLVLFTTGDRIPADIRITAATDLTIDESNLTGENEPVAKYPEALRSTKAA  150
             V A ELV GD+VL   G+R+PAD RI   +   +DES LTGE+ PV K           
Sbjct  17   EVPADELVPGDIVLLKPGERVPADGRIVEGSAS-VDESLLTGESLPVEK-----------  64

Query  151  VSHSPKIVSPPRSPFYDAPASGAVGADIRLNEQHNIAFMGTLVRSGYGQGIVIGTGAKTE  210
                                           ++ ++ + GT+V SG  + +V  TG  TE
Sbjct  65   -------------------------------KKGDMVYSGTVVVSGSAKAVVTATGEDTE  93

Query  211  FGSISVSLQEIESPRTPLQLSMDRLGQELSYISFGVIALIVVIGLVQGRKLLEMFTIGVS  270
             G I+  ++E +S +TPLQ  +DRLG+  S +   +   + ++ L  G   L      ++
Sbjct  94   LGRIARLVEEAKSKKTPLQRLLDRLGKYFSPVVLLIALAVFLLWLFVGGPPLRALLRALA  153

Query  271  LAVAAIPEGLPIIVTVTLALGVLRMAKR  298
            + VAA P  LP+   + LA+G  R+AK+
Sbjct  154  VLVAACPCALPLATPLALAVGARRLAKK  181


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 65.7 bits (161),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 39/80 (49%), Gaps = 10/80 (13%)

Query  407  VGQPTDVAILDLLDTFGED--DLRDRISRRVAETPFSSERKWMGVIIGSAQNDAPSFTGA  464
            VG PT+ A+L   +  G D  +LR     RVAE PF+S+RK M  +     +        
Sbjct  20   VGDPTESALLVFAEKMGIDVEELRKD-YPRVAEIPFNSDRKRMSTVHKLPDDG-------  71

Query  465  NNVAYIKGALEQVLTRCDTY  484
                ++KGA E +L RC T 
Sbjct  72   KYRLFVKGAPEIILDRCTTI  91


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 61.4 bits (149),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 25/116 (22%), Positives = 41/116 (35%), Gaps = 20/116 (17%)

Query  566  NDPPRKDVHKSIRRLMAGGVRVIMITGDAESTAVAIAKKLGMPVRDSPGSRPVLTGQDLD  625
                     ++++ L   G++V ++TGD    A A+ + LG+                  
Sbjct  96   ELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFD-------------  142

Query  626  RMSTADLAQAISTTSIFARTSPEHKMKIVRALQSRGDVVAMTGDGVNDAPALKKAD  681
                              +  PE  +  +  L  + + V M GDGVND PA K A 
Sbjct  143  -------VVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMVGDGVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.318    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1022971856


Query= TCONS_00011241

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family    197     1e-62


>CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family.  
Length=399

 Score = 197 bits (504),  Expect = 1e-62, Method: Composition-based stats.
 Identities = 87/202 (43%), Positives = 117/202 (58%), Gaps = 5/202 (2%)

Query  1    MQFCGVTAAIIMGAVAERGRLLPAMVFTFIWATIVYCPMVCWVWNVNGWAFKYGVL-DYA  59
            M F      I+ GAVAER +    ++F+ +  T+VY P+  WVW   GW  K GVL D+A
Sbjct  92   MMFAATAITIVSGAVAERIKFSAYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLVDFA  151

Query  60   GGGPVEIGSGMAALAYSMVLGRRQER---MMLNFRPHNVSLILLGTVFLWFGWLGFNGGS  116
            G   V I  G A LA ++VLG R  R         PHN+   +LGT  LWFGW GFN GS
Sbjct  152  GSTVVHIFGGYAGLAAALVLGPRIGRFTGKNEAITPHNLPFAVLGTFLLWFGWFGFNAGS  211

Query  117  SFGANIRA-TVACWNTNLTAAFGAITWVLLDWRLARKWSMVGWCSGTISGLVAATPASGF  175
            +  AN RA  +A  NTNL AA G +T +L+      K +M+G  +G ++GLVA TPA G 
Sbjct  212  ALTANGRARAIAAVNTNLAAAGGGLTALLISRLKTGKPNMLGLANGALAGLVAITPACGV  271

Query  176  LTPWASVILGIVTGVVCNYATK  197
            +TPW ++I+G++ GV+     K
Sbjct  272  VTPWGALIIGLIAGVLSVLGYK  293



Lambda      K        H        a         alpha
   0.328    0.139    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00011242

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family    268     7e-88


>CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family.  
Length=399

 Score = 268 bits (688),  Expect = 7e-88, Method: Composition-based stats.
 Identities = 115/300 (38%), Positives = 168/300 (56%), Gaps = 13/300 (4%)

Query  53   AYIIVASAMVMVMIPGLGFLYSGLARRKSALSMIWACMASFSVVTFQWYFWGYSLAFSPT  112
            A+I++++A+V+ M PG   L SGL R K+ L++++      ++    ++ +GYSLAF   
Sbjct  1    AFILLSAALVIFMQPGFALLESGLVRSKNVLNILYKNFQDVAIGVLAYWLFGYSLAFGKR  60

Query  113  AT-NGYIGNLRNFGLMKTLADPSPGSPLIPNLLYAFYQMQFCGVTAAIIMGAVAERGRLL  171
               +G+IGNL                  +P+ L+  +QM F      I+ GAVAER +  
Sbjct  61   YGFSGFIGNLGVSAAGIQWGT-------LPDGLFFLFQMMFAATAITIVSGAVAERIKFS  113

Query  172  PAMVFTFIWATIVYCPMVCWVWNVNGWAFKYGVL-DYAGGGPVEIGSGMAALAYSMVLGR  230
              ++F+ +  T+VY P+  WVW   GW  K GVL D+AG   V I  G A LA ++VLG 
Sbjct  114  AYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLVDFAGSTVVHIFGGYAGLAAALVLGP  173

Query  231  RQER---MMLNFRPHNVSLILLGTVFLWFGWLGFNGGSSFGANIRA-TVACWNTNLTAAF  286
            R  R         PHN+   +LGT  LWFGW GFN GS+  AN RA  +A  NTNL AA 
Sbjct  174  RIGRFTGKNEAITPHNLPFAVLGTFLLWFGWFGFNAGSALTANGRARAIAAVNTNLAAAG  233

Query  287  GAITWVLLDWRLARKWSMVGWCSGTISGLVAATPASGFLTPWASVILGIVTGVVCNYATK  346
            G +T +L+      K +M+G  +G ++GLVA TPA G +TPW ++I+G++ GV+     K
Sbjct  234  GGLTALLISRLKTGKPNMLGLANGALAGLVAITPACGVVTPWGALIIGLIAGVLSVLGYK  293



Lambda      K        H        a         alpha
   0.325    0.137    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00017604

Length=562
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family    376     6e-127


>CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family.  
Length=399

 Score = 376 bits (967),  Expect = 6e-127, Method: Composition-based stats.
 Identities = 158/414 (38%), Positives = 226/414 (55%), Gaps = 22/414 (5%)

Query  53   AYIIVASAMVMVMIPGLGFLYSGLARRKSALSMIWACMASFSVVTFQWYFWGYSLAFSPT  112
            A+I++++A+V+ M PG   L SGL R K+ L++++      ++    ++ +GYSLAF   
Sbjct  1    AFILLSAALVIFMQPGFALLESGLVRSKNVLNILYKNFQDVAIGVLAYWLFGYSLAFGKR  60

Query  113  AT-NGYIGNLRNFGLMKTLADPSPGSPLIPNLLYAFYQMQFCGVTAAIIMGAVAERGRLL  171
               +G+IGNL                  +P+ L+  +QM F      I+ GAVAER +  
Sbjct  61   YGFSGFIGNLGVSAAGIQWGT-------LPDGLFFLFQMMFAATAITIVSGAVAERIKFS  113

Query  172  PAMVFTFIWATIVYCPMVCWVWNVNGWAFKYGVL-DYAGGGPVEIGSGMAALAYSMVLGR  230
              ++F+ +  T+VY P+  WVW   GW  K GVL D+AG   V I  G A LA ++VLG 
Sbjct  114  AYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLVDFAGSTVVHIFGGYAGLAAALVLGP  173

Query  231  RQER---MMLNFRPHNVSLILLGTVFLWFGWLGFNGGSSFGANIRA-TVACWNTNLTAAF  286
            R  R         PHN+   +LGT  LWFGW GFN GS+  AN RA  +A  NTNL AA 
Sbjct  174  RIGRFTGKNEAITPHNLPFAVLGTFLLWFGWFGFNAGSALTANGRARAIAAVNTNLAAAG  233

Query  287  GAITWVLLDWRLARKWSMVGWCSGTISGLVAATPASGFLTPWASVILGIVTGVVCNYATK  346
            G +T +L+      K +M+G  +G ++GLVA TPA G +TPW ++I+G++ GV+     K
Sbjct  234  GGLTALLISRLKTGKPNMLGLANGALAGLVAITPACGVVTPWGALIIGLIAGVLSVLGYK  293

Query  347  -VKYWIRIDDSMDVFAEHGVAGIIGLIFNALFADDAIVGLDGVNTGTGVGGWVIHNYKQL  405
             +K  + IDD +DVF  HGV GI G I   +FA   +            GG +  N KQL
Sbjct  294  FLKEKLGIDDPLDVFPVHGVGGIWGGIAVGIFAAPYVNT------SGIYGGLLYGNGKQL  347

Query  406  YVQIAFIVASCAYSFVVSAIIAYVINAIPGLKLRASEEAELLGMDDDQLGEFAY  459
             VQ+  I    AY+F V+ I+  ++    G  LR SEE E +G+D  + GE AY
Sbjct  348  GVQLIGIAVILAYAFGVTFILGLLLGLTLG--LRVSEEEEEVGLDVAEHGETAY  399



Lambda      K        H        a         alpha
   0.322    0.138    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 702381160


Query= TCONS_00011248

Length=562
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family    376     6e-127


>CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family.  
Length=399

 Score = 376 bits (967),  Expect = 6e-127, Method: Composition-based stats.
 Identities = 158/414 (38%), Positives = 226/414 (55%), Gaps = 22/414 (5%)

Query  53   AYIIVASAMVMVMIPGLGFLYSGLARRKSALSMIWACMASFSVVTFQWYFWGYSLAFSPT  112
            A+I++++A+V+ M PG   L SGL R K+ L++++      ++    ++ +GYSLAF   
Sbjct  1    AFILLSAALVIFMQPGFALLESGLVRSKNVLNILYKNFQDVAIGVLAYWLFGYSLAFGKR  60

Query  113  AT-NGYIGNLRNFGLMKTLADPSPGSPLIPNLLYAFYQMQFCGVTAAIIMGAVAERGRLL  171
               +G+IGNL                  +P+ L+  +QM F      I+ GAVAER +  
Sbjct  61   YGFSGFIGNLGVSAAGIQWGT-------LPDGLFFLFQMMFAATAITIVSGAVAERIKFS  113

Query  172  PAMVFTFIWATIVYCPMVCWVWNVNGWAFKYGVL-DYAGGGPVEIGSGMAALAYSMVLGR  230
              ++F+ +  T+VY P+  WVW   GW  K GVL D+AG   V I  G A LA ++VLG 
Sbjct  114  AYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLVDFAGSTVVHIFGGYAGLAAALVLGP  173

Query  231  RQER---MMLNFRPHNVSLILLGTVFLWFGWLGFNGGSSFGANIRA-TVACWNTNLTAAF  286
            R  R         PHN+   +LGT  LWFGW GFN GS+  AN RA  +A  NTNL AA 
Sbjct  174  RIGRFTGKNEAITPHNLPFAVLGTFLLWFGWFGFNAGSALTANGRARAIAAVNTNLAAAG  233

Query  287  GAITWVLLDWRLARKWSMVGWCSGTISGLVAATPASGFLTPWASVILGIVTGVVCNYATK  346
            G +T +L+      K +M+G  +G ++GLVA TPA G +TPW ++I+G++ GV+     K
Sbjct  234  GGLTALLISRLKTGKPNMLGLANGALAGLVAITPACGVVTPWGALIIGLIAGVLSVLGYK  293

Query  347  -VKYWIRIDDSMDVFAEHGVAGIIGLIFNALFADDAIVGLDGVNTGTGVGGWVIHNYKQL  405
             +K  + IDD +DVF  HGV GI G I   +FA   +            GG +  N KQL
Sbjct  294  FLKEKLGIDDPLDVFPVHGVGGIWGGIAVGIFAAPYVNT------SGIYGGLLYGNGKQL  347

Query  406  YVQIAFIVASCAYSFVVSAIIAYVINAIPGLKLRASEEAELLGMDDDQLGEFAY  459
             VQ+  I    AY+F V+ I+  ++    G  LR SEE E +G+D  + GE AY
Sbjct  348  GVQLIGIAVILAYAFGVTFILGLLLGLTLG--LRVSEEEEEVGLDVAEHGETAY  399



Lambda      K        H        a         alpha
   0.322    0.138    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 702381160


Query= TCONS_00011244

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family    309     4e-103


>CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family.  
Length=399

 Score = 309 bits (794),  Expect = 4e-103, Method: Composition-based stats.
 Identities = 130/316 (41%), Positives = 175/316 (55%), Gaps = 14/316 (4%)

Query  1    MQFCGVTAAIIMGAVAERGRLLPAMVFTFIWATIVYCPMVCWVWNVNGWAFKYGVL-DYA  59
            M F      I+ GAVAER +    ++F+ +  T+VY P+  WVW   GW  K GVL D+A
Sbjct  92   MMFAATAITIVSGAVAERIKFSAYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLVDFA  151

Query  60   GGGPVEIGSGMAALAYSMVLGRRQER---MMLNFRPHNVSLILLGTVFLWFGWLGFNGGS  116
            G   V I  G A LA ++VLG R  R         PHN+   +LGT  LWFGW GFN GS
Sbjct  152  GSTVVHIFGGYAGLAAALVLGPRIGRFTGKNEAITPHNLPFAVLGTFLLWFGWFGFNAGS  211

Query  117  SFGANIRA-TVACWNTNLTAAFGAITWVLLDWRLARKWSMVGWCSGTISGLVAATPASGF  175
            +  AN RA  +A  NTNL AA G +T +L+      K +M+G  +G ++GLVA TPA G 
Sbjct  212  ALTANGRARAIAAVNTNLAAAGGGLTALLISRLKTGKPNMLGLANGALAGLVAITPACGV  271

Query  176  LTPWASVILGIVTGVVCNYATK-VKYWIRIDDSMDVFAEHGVAGIIGLIFNALFADDAIV  234
            +TPW ++I+G++ GV+     K +K  + IDD +DVF  HGV GI G I   +FA   + 
Sbjct  272  VTPWGALIIGLIAGVLSVLGYKFLKEKLGIDDPLDVFPVHGVGGIWGGIAVGIFAAPYVN  331

Query  235  GLDGVNTGTGVGGWVIHNYKQLYVQIAFIVASCAYSFVVSAIIAYVINAIPGLKLRASEE  294
                       GG +  N KQL VQ+  I    AY+F V+ I+  ++    G  LR SEE
Sbjct  332  T------SGIYGGLLYGNGKQLGVQLIGIAVILAYAFGVTFILGLLLGLTLG--LRVSEE  383

Query  295  AELLGMDDDQLGEFAY  310
             E +G+D  + GE AY
Sbjct  384  EEEVGLDVAEHGETAY  399



Lambda      K        H        a         alpha
   0.323    0.139    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00011243

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family    309     4e-103


>CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family.  
Length=399

 Score = 309 bits (794),  Expect = 4e-103, Method: Composition-based stats.
 Identities = 130/316 (41%), Positives = 175/316 (55%), Gaps = 14/316 (4%)

Query  1    MQFCGVTAAIIMGAVAERGRLLPAMVFTFIWATIVYCPMVCWVWNVNGWAFKYGVL-DYA  59
            M F      I+ GAVAER +    ++F+ +  T+VY P+  WVW   GW  K GVL D+A
Sbjct  92   MMFAATAITIVSGAVAERIKFSAYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLVDFA  151

Query  60   GGGPVEIGSGMAALAYSMVLGRRQER---MMLNFRPHNVSLILLGTVFLWFGWLGFNGGS  116
            G   V I  G A LA ++VLG R  R         PHN+   +LGT  LWFGW GFN GS
Sbjct  152  GSTVVHIFGGYAGLAAALVLGPRIGRFTGKNEAITPHNLPFAVLGTFLLWFGWFGFNAGS  211

Query  117  SFGANIRA-TVACWNTNLTAAFGAITWVLLDWRLARKWSMVGWCSGTISGLVAATPASGF  175
            +  AN RA  +A  NTNL AA G +T +L+      K +M+G  +G ++GLVA TPA G 
Sbjct  212  ALTANGRARAIAAVNTNLAAAGGGLTALLISRLKTGKPNMLGLANGALAGLVAITPACGV  271

Query  176  LTPWASVILGIVTGVVCNYATK-VKYWIRIDDSMDVFAEHGVAGIIGLIFNALFADDAIV  234
            +TPW ++I+G++ GV+     K +K  + IDD +DVF  HGV GI G I   +FA   + 
Sbjct  272  VTPWGALIIGLIAGVLSVLGYKFLKEKLGIDDPLDVFPVHGVGGIWGGIAVGIFAAPYVN  331

Query  235  GLDGVNTGTGVGGWVIHNYKQLYVQIAFIVASCAYSFVVSAIIAYVINAIPGLKLRASEE  294
                       GG +  N KQL VQ+  I    AY+F V+ I+  ++    G  LR SEE
Sbjct  332  T------SGIYGGLLYGNGKQLGVQLIGIAVILAYAFGVTFILGLLLGLTLG--LRVSEE  383

Query  295  AELLGMDDDQLGEFAY  310
             E +G+D  + GE AY
Sbjct  384  EEEVGLDVAEHGETAY  399



Lambda      K        H        a         alpha
   0.323    0.139    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00011246

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family    371     1e-125


>CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family.  
Length=399

 Score = 371 bits (955),  Expect = 1e-125, Method: Composition-based stats.
 Identities = 158/414 (38%), Positives = 226/414 (55%), Gaps = 22/414 (5%)

Query  23   AYIIVASAMVMVMIPGLGFLYSGLARRKSALSMIWACMASFSVVTFQWYFWGYSLAFSPT  82
            A+I++++A+V+ M PG   L SGL R K+ L++++      ++    ++ +GYSLAF   
Sbjct  1    AFILLSAALVIFMQPGFALLESGLVRSKNVLNILYKNFQDVAIGVLAYWLFGYSLAFGKR  60

Query  83   AT-NGYIGNLRNFGLMKTLADPSPGSPLIPNLLYAFYQMQFCGVTAAIIMGAVAERGRLL  141
               +G+IGNL                  +P+ L+  +QM F      I+ GAVAER +  
Sbjct  61   YGFSGFIGNLGVSAAGIQWGT-------LPDGLFFLFQMMFAATAITIVSGAVAERIKFS  113

Query  142  PAMVFTFIWATIVYCPMVCWVWNVNGWAFKYGVL-DYAGGGPVEIGSGMAALAYSMVLGR  200
              ++F+ +  T+VY P+  WVW   GW  K GVL D+AG   V I  G A LA ++VLG 
Sbjct  114  AYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLVDFAGSTVVHIFGGYAGLAAALVLGP  173

Query  201  RQER---MMLNFRPHNVSLILLGTVFLWFGWLGFNGGSSFGANIRA-TVACWNTNLTAAF  256
            R  R         PHN+   +LGT  LWFGW GFN GS+  AN RA  +A  NTNL AA 
Sbjct  174  RIGRFTGKNEAITPHNLPFAVLGTFLLWFGWFGFNAGSALTANGRARAIAAVNTNLAAAG  233

Query  257  GAITWVLLDWRLARKWSMVGWCSGTISGLVAATPASGFLTPWASVILGIVTGVVCNYATK  316
            G +T +L+      K +M+G  +G ++GLVA TPA G +TPW ++I+G++ GV+     K
Sbjct  234  GGLTALLISRLKTGKPNMLGLANGALAGLVAITPACGVVTPWGALIIGLIAGVLSVLGYK  293

Query  317  -VKYWIRIDDSMDVFAEHGVAGIIGLIFNALFADDAIVGLDGVNTGTGVGGWVIHNYKQL  375
             +K  + IDD +DVF  HGV GI G I   +FA   +            GG +  N KQL
Sbjct  294  FLKEKLGIDDPLDVFPVHGVGGIWGGIAVGIFAAPYVNT------SGIYGGLLYGNGKQL  347

Query  376  YVQIAFIVASCAYSFVVSAIIAYVINAIPGLKLRASEEAELLGMDDDQLGEFAY  429
             VQ+  I    AY+F V+ I+  ++    G  LR SEE E +G+D  + GE AY
Sbjct  348  GVQLIGIAVILAYAFGVTFILGLLLGLTLG--LRVSEEEEEVGLDVAEHGETAY  399



Lambda      K        H        a         alpha
   0.323    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00011245

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family    371     1e-125


>CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family.  
Length=399

 Score = 371 bits (955),  Expect = 1e-125, Method: Composition-based stats.
 Identities = 158/414 (38%), Positives = 226/414 (55%), Gaps = 22/414 (5%)

Query  23   AYIIVASAMVMVMIPGLGFLYSGLARRKSALSMIWACMASFSVVTFQWYFWGYSLAFSPT  82
            A+I++++A+V+ M PG   L SGL R K+ L++++      ++    ++ +GYSLAF   
Sbjct  1    AFILLSAALVIFMQPGFALLESGLVRSKNVLNILYKNFQDVAIGVLAYWLFGYSLAFGKR  60

Query  83   AT-NGYIGNLRNFGLMKTLADPSPGSPLIPNLLYAFYQMQFCGVTAAIIMGAVAERGRLL  141
               +G+IGNL                  +P+ L+  +QM F      I+ GAVAER +  
Sbjct  61   YGFSGFIGNLGVSAAGIQWGT-------LPDGLFFLFQMMFAATAITIVSGAVAERIKFS  113

Query  142  PAMVFTFIWATIVYCPMVCWVWNVNGWAFKYGVL-DYAGGGPVEIGSGMAALAYSMVLGR  200
              ++F+ +  T+VY P+  WVW   GW  K GVL D+AG   V I  G A LA ++VLG 
Sbjct  114  AYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLVDFAGSTVVHIFGGYAGLAAALVLGP  173

Query  201  RQER---MMLNFRPHNVSLILLGTVFLWFGWLGFNGGSSFGANIRA-TVACWNTNLTAAF  256
            R  R         PHN+   +LGT  LWFGW GFN GS+  AN RA  +A  NTNL AA 
Sbjct  174  RIGRFTGKNEAITPHNLPFAVLGTFLLWFGWFGFNAGSALTANGRARAIAAVNTNLAAAG  233

Query  257  GAITWVLLDWRLARKWSMVGWCSGTISGLVAATPASGFLTPWASVILGIVTGVVCNYATK  316
            G +T +L+      K +M+G  +G ++GLVA TPA G +TPW ++I+G++ GV+     K
Sbjct  234  GGLTALLISRLKTGKPNMLGLANGALAGLVAITPACGVVTPWGALIIGLIAGVLSVLGYK  293

Query  317  -VKYWIRIDDSMDVFAEHGVAGIIGLIFNALFADDAIVGLDGVNTGTGVGGWVIHNYKQL  375
             +K  + IDD +DVF  HGV GI G I   +FA   +            GG +  N KQL
Sbjct  294  FLKEKLGIDDPLDVFPVHGVGGIWGGIAVGIFAAPYVNT------SGIYGGLLYGNGKQL  347

Query  376  YVQIAFIVASCAYSFVVSAIIAYVINAIPGLKLRASEEAELLGMDDDQLGEFAY  429
             VQ+  I    AY+F V+ I+  ++    G  LR SEE E +G+D  + GE AY
Sbjct  348  GVQLIGIAVILAYAFGVTFILGLLLGLTLG--LRVSEEEEEVGLDVAEHGETAY  399



Lambda      K        H        a         alpha
   0.323    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00011247

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family    309     4e-103


>CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family.  
Length=399

 Score = 309 bits (794),  Expect = 4e-103, Method: Composition-based stats.
 Identities = 130/316 (41%), Positives = 175/316 (55%), Gaps = 14/316 (4%)

Query  1    MQFCGVTAAIIMGAVAERGRLLPAMVFTFIWATIVYCPMVCWVWNVNGWAFKYGVL-DYA  59
            M F      I+ GAVAER +    ++F+ +  T+VY P+  WVW   GW  K GVL D+A
Sbjct  92   MMFAATAITIVSGAVAERIKFSAYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLVDFA  151

Query  60   GGGPVEIGSGMAALAYSMVLGRRQER---MMLNFRPHNVSLILLGTVFLWFGWLGFNGGS  116
            G   V I  G A LA ++VLG R  R         PHN+   +LGT  LWFGW GFN GS
Sbjct  152  GSTVVHIFGGYAGLAAALVLGPRIGRFTGKNEAITPHNLPFAVLGTFLLWFGWFGFNAGS  211

Query  117  SFGANIRA-TVACWNTNLTAAFGAITWVLLDWRLARKWSMVGWCSGTISGLVAATPASGF  175
            +  AN RA  +A  NTNL AA G +T +L+      K +M+G  +G ++GLVA TPA G 
Sbjct  212  ALTANGRARAIAAVNTNLAAAGGGLTALLISRLKTGKPNMLGLANGALAGLVAITPACGV  271

Query  176  LTPWASVILGIVTGVVCNYATK-VKYWIRIDDSMDVFAEHGVAGIIGLIFNALFADDAIV  234
            +TPW ++I+G++ GV+     K +K  + IDD +DVF  HGV GI G I   +FA   + 
Sbjct  272  VTPWGALIIGLIAGVLSVLGYKFLKEKLGIDDPLDVFPVHGVGGIWGGIAVGIFAAPYVN  331

Query  235  GLDGVNTGTGVGGWVIHNYKQLYVQIAFIVASCAYSFVVSAIIAYVINAIPGLKLRASEE  294
                       GG +  N KQL VQ+  I    AY+F V+ I+  ++    G  LR SEE
Sbjct  332  T------SGIYGGLLYGNGKQLGVQLIGIAVILAYAFGVTFILGLLLGLTLG--LRVSEE  383

Query  295  AELLGMDDDQLGEFAY  310
             E +G+D  + GE AY
Sbjct  384  EEEVGLDVAEHGETAY  399



Lambda      K        H        a         alpha
   0.323    0.139    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00017605

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family    296     1e-98


>CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family.  
Length=399

 Score = 296 bits (761),  Expect = 1e-98, Method: Composition-based stats.
 Identities = 129/328 (39%), Positives = 185/328 (56%), Gaps = 14/328 (4%)

Query  53   AYIIVASAMVMVMIPGLGFLYSGLARRKSALSMIWACMASFSVVTFQWYFWGYSLAFSPT  112
            A+I++++A+V+ M PG   L SGL R K+ L++++      ++    ++ +GYSLAF   
Sbjct  1    AFILLSAALVIFMQPGFALLESGLVRSKNVLNILYKNFQDVAIGVLAYWLFGYSLAFGKR  60

Query  113  AT-NGYIGNLRNFGLMKTLADPSPGSPLIPNLLYAFYQMQFCGVTAAIIMGAVAERGRLL  171
               +G+IGNL                  +P+ L+  +QM F      I+ GAVAER +  
Sbjct  61   YGFSGFIGNLGVSAAGIQWGT-------LPDGLFFLFQMMFAATAITIVSGAVAERIKFS  113

Query  172  PAMVFTFIWATIVYCPMVCWVWNVNGWAFKYGVL-DYAGGGPVEIGSGMAALAYSMVLGR  230
              ++F+ +  T+VY P+  WVW   GW  K GVL D+AG   V I  G A LA ++VLG 
Sbjct  114  AYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLVDFAGSTVVHIFGGYAGLAAALVLGP  173

Query  231  RQER---MMLNFRPHNVSLILLGTVFLWFGWLGFNGGSSFGANIRA-TVACWNTNLTAAF  286
            R  R         PHN+   +LGT  LWFGW GFN GS+  AN RA  +A  NTNL AA 
Sbjct  174  RIGRFTGKNEAITPHNLPFAVLGTFLLWFGWFGFNAGSALTANGRARAIAAVNTNLAAAG  233

Query  287  GAITWVLLDWRLARKWSMVGWCSGTISGLVAATPASGFLTPWASVILGIVTGVVCNYATK  346
            G +T +L+      K +M+G  +G ++GLVA TPA G +TPW ++I+G++ GV+     K
Sbjct  234  GGLTALLISRLKTGKPNMLGLANGALAGLVAITPACGVVTPWGALIIGLIAGVLSVLGYK  293

Query  347  -VKYWIRIDDSMDVFAEHGVAGIIGLIF  373
             +K  + IDD +DVF  HGV GI G I 
Sbjct  294  FLKEKLGIDDPLDVFPVHGVGGIWGGIA  321



Lambda      K        H        a         alpha
   0.325    0.138    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00011250

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family    309     4e-103


>CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family.  
Length=399

 Score = 309 bits (794),  Expect = 4e-103, Method: Composition-based stats.
 Identities = 130/316 (41%), Positives = 175/316 (55%), Gaps = 14/316 (4%)

Query  1    MQFCGVTAAIIMGAVAERGRLLPAMVFTFIWATIVYCPMVCWVWNVNGWAFKYGVL-DYA  59
            M F      I+ GAVAER +    ++F+ +  T+VY P+  WVW   GW  K GVL D+A
Sbjct  92   MMFAATAITIVSGAVAERIKFSAYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLVDFA  151

Query  60   GGGPVEIGSGMAALAYSMVLGRRQER---MMLNFRPHNVSLILLGTVFLWFGWLGFNGGS  116
            G   V I  G A LA ++VLG R  R         PHN+   +LGT  LWFGW GFN GS
Sbjct  152  GSTVVHIFGGYAGLAAALVLGPRIGRFTGKNEAITPHNLPFAVLGTFLLWFGWFGFNAGS  211

Query  117  SFGANIRA-TVACWNTNLTAAFGAITWVLLDWRLARKWSMVGWCSGTISGLVAATPASGF  175
            +  AN RA  +A  NTNL AA G +T +L+      K +M+G  +G ++GLVA TPA G 
Sbjct  212  ALTANGRARAIAAVNTNLAAAGGGLTALLISRLKTGKPNMLGLANGALAGLVAITPACGV  271

Query  176  LTPWASVILGIVTGVVCNYATK-VKYWIRIDDSMDVFAEHGVAGIIGLIFNALFADDAIV  234
            +TPW ++I+G++ GV+     K +K  + IDD +DVF  HGV GI G I   +FA   + 
Sbjct  272  VTPWGALIIGLIAGVLSVLGYKFLKEKLGIDDPLDVFPVHGVGGIWGGIAVGIFAAPYVN  331

Query  235  GLDGVNTGTGVGGWVIHNYKQLYVQIAFIVASCAYSFVVSAIIAYVINAIPGLKLRASEE  294
                       GG +  N KQL VQ+  I    AY+F V+ I+  ++    G  LR SEE
Sbjct  332  T------SGIYGGLLYGNGKQLGVQLIGIAVILAYAFGVTFILGLLLGLTLG--LRVSEE  383

Query  295  AELLGMDDDQLGEFAY  310
             E +G+D  + GE AY
Sbjct  384  EEEVGLDVAEHGETAY  399



Lambda      K        H        a         alpha
   0.323    0.139    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00011249

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family    309     4e-103


>CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family.  
Length=399

 Score = 309 bits (794),  Expect = 4e-103, Method: Composition-based stats.
 Identities = 130/316 (41%), Positives = 175/316 (55%), Gaps = 14/316 (4%)

Query  1    MQFCGVTAAIIMGAVAERGRLLPAMVFTFIWATIVYCPMVCWVWNVNGWAFKYGVL-DYA  59
            M F      I+ GAVAER +    ++F+ +  T+VY P+  WVW   GW  K GVL D+A
Sbjct  92   MMFAATAITIVSGAVAERIKFSAYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLVDFA  151

Query  60   GGGPVEIGSGMAALAYSMVLGRRQER---MMLNFRPHNVSLILLGTVFLWFGWLGFNGGS  116
            G   V I  G A LA ++VLG R  R         PHN+   +LGT  LWFGW GFN GS
Sbjct  152  GSTVVHIFGGYAGLAAALVLGPRIGRFTGKNEAITPHNLPFAVLGTFLLWFGWFGFNAGS  211

Query  117  SFGANIRA-TVACWNTNLTAAFGAITWVLLDWRLARKWSMVGWCSGTISGLVAATPASGF  175
            +  AN RA  +A  NTNL AA G +T +L+      K +M+G  +G ++GLVA TPA G 
Sbjct  212  ALTANGRARAIAAVNTNLAAAGGGLTALLISRLKTGKPNMLGLANGALAGLVAITPACGV  271

Query  176  LTPWASVILGIVTGVVCNYATK-VKYWIRIDDSMDVFAEHGVAGIIGLIFNALFADDAIV  234
            +TPW ++I+G++ GV+     K +K  + IDD +DVF  HGV GI G I   +FA   + 
Sbjct  272  VTPWGALIIGLIAGVLSVLGYKFLKEKLGIDDPLDVFPVHGVGGIWGGIAVGIFAAPYVN  331

Query  235  GLDGVNTGTGVGGWVIHNYKQLYVQIAFIVASCAYSFVVSAIIAYVINAIPGLKLRASEE  294
                       GG +  N KQL VQ+  I    AY+F V+ I+  ++    G  LR SEE
Sbjct  332  T------SGIYGGLLYGNGKQLGVQLIGIAVILAYAFGVTFILGLLLGLTLG--LRVSEE  383

Query  295  AELLGMDDDQLGEFAY  310
             E +G+D  + GE AY
Sbjct  384  EEEVGLDVAEHGETAY  399



Lambda      K        H        a         alpha
   0.323    0.139    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00011251

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family    309     4e-103


>CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family.  
Length=399

 Score = 309 bits (794),  Expect = 4e-103, Method: Composition-based stats.
 Identities = 130/316 (41%), Positives = 175/316 (55%), Gaps = 14/316 (4%)

Query  1    MQFCGVTAAIIMGAVAERGRLLPAMVFTFIWATIVYCPMVCWVWNVNGWAFKYGVL-DYA  59
            M F      I+ GAVAER +    ++F+ +  T+VY P+  WVW   GW  K GVL D+A
Sbjct  92   MMFAATAITIVSGAVAERIKFSAYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLVDFA  151

Query  60   GGGPVEIGSGMAALAYSMVLGRRQER---MMLNFRPHNVSLILLGTVFLWFGWLGFNGGS  116
            G   V I  G A LA ++VLG R  R         PHN+   +LGT  LWFGW GFN GS
Sbjct  152  GSTVVHIFGGYAGLAAALVLGPRIGRFTGKNEAITPHNLPFAVLGTFLLWFGWFGFNAGS  211

Query  117  SFGANIRA-TVACWNTNLTAAFGAITWVLLDWRLARKWSMVGWCSGTISGLVAATPASGF  175
            +  AN RA  +A  NTNL AA G +T +L+      K +M+G  +G ++GLVA TPA G 
Sbjct  212  ALTANGRARAIAAVNTNLAAAGGGLTALLISRLKTGKPNMLGLANGALAGLVAITPACGV  271

Query  176  LTPWASVILGIVTGVVCNYATK-VKYWIRIDDSMDVFAEHGVAGIIGLIFNALFADDAIV  234
            +TPW ++I+G++ GV+     K +K  + IDD +DVF  HGV GI G I   +FA   + 
Sbjct  272  VTPWGALIIGLIAGVLSVLGYKFLKEKLGIDDPLDVFPVHGVGGIWGGIAVGIFAAPYVN  331

Query  235  GLDGVNTGTGVGGWVIHNYKQLYVQIAFIVASCAYSFVVSAIIAYVINAIPGLKLRASEE  294
                       GG +  N KQL VQ+  I    AY+F V+ I+  ++    G  LR SEE
Sbjct  332  T------SGIYGGLLYGNGKQLGVQLIGIAVILAYAFGVTFILGLLLGLTLG--LRVSEE  383

Query  295  AELLGMDDDQLGEFAY  310
             E +G+D  + GE AY
Sbjct  384  EEEVGLDVAEHGETAY  399



Lambda      K        H        a         alpha
   0.323    0.139    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00011252

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00011253

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family    309     4e-103


>CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family.  
Length=399

 Score = 309 bits (794),  Expect = 4e-103, Method: Composition-based stats.
 Identities = 130/316 (41%), Positives = 175/316 (55%), Gaps = 14/316 (4%)

Query  1    MQFCGVTAAIIMGAVAERGRLLPAMVFTFIWATIVYCPMVCWVWNVNGWAFKYGVL-DYA  59
            M F      I+ GAVAER +    ++F+ +  T+VY P+  WVW   GW  K GVL D+A
Sbjct  92   MMFAATAITIVSGAVAERIKFSAYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLVDFA  151

Query  60   GGGPVEIGSGMAALAYSMVLGRRQER---MMLNFRPHNVSLILLGTVFLWFGWLGFNGGS  116
            G   V I  G A LA ++VLG R  R         PHN+   +LGT  LWFGW GFN GS
Sbjct  152  GSTVVHIFGGYAGLAAALVLGPRIGRFTGKNEAITPHNLPFAVLGTFLLWFGWFGFNAGS  211

Query  117  SFGANIRA-TVACWNTNLTAAFGAITWVLLDWRLARKWSMVGWCSGTISGLVAATPASGF  175
            +  AN RA  +A  NTNL AA G +T +L+      K +M+G  +G ++GLVA TPA G 
Sbjct  212  ALTANGRARAIAAVNTNLAAAGGGLTALLISRLKTGKPNMLGLANGALAGLVAITPACGV  271

Query  176  LTPWASVILGIVTGVVCNYATK-VKYWIRIDDSMDVFAEHGVAGIIGLIFNALFADDAIV  234
            +TPW ++I+G++ GV+     K +K  + IDD +DVF  HGV GI G I   +FA   + 
Sbjct  272  VTPWGALIIGLIAGVLSVLGYKFLKEKLGIDDPLDVFPVHGVGGIWGGIAVGIFAAPYVN  331

Query  235  GLDGVNTGTGVGGWVIHNYKQLYVQIAFIVASCAYSFVVSAIIAYVINAIPGLKLRASEE  294
                       GG +  N KQL VQ+  I    AY+F V+ I+  ++    G  LR SEE
Sbjct  332  T------SGIYGGLLYGNGKQLGVQLIGIAVILAYAFGVTFILGLLLGLTLG--LRVSEE  383

Query  295  AELLGMDDDQLGEFAY  310
             E +G+D  + GE AY
Sbjct  384  EEEVGLDVAEHGETAY  399



Lambda      K        H        a         alpha
   0.323    0.139    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00011254

Length=562
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family    376     6e-127


>CDD:395729 pfam00909, Ammonium_transp, Ammonium Transporter Family.  
Length=399

 Score = 376 bits (967),  Expect = 6e-127, Method: Composition-based stats.
 Identities = 158/414 (38%), Positives = 226/414 (55%), Gaps = 22/414 (5%)

Query  53   AYIIVASAMVMVMIPGLGFLYSGLARRKSALSMIWACMASFSVVTFQWYFWGYSLAFSPT  112
            A+I++++A+V+ M PG   L SGL R K+ L++++      ++    ++ +GYSLAF   
Sbjct  1    AFILLSAALVIFMQPGFALLESGLVRSKNVLNILYKNFQDVAIGVLAYWLFGYSLAFGKR  60

Query  113  AT-NGYIGNLRNFGLMKTLADPSPGSPLIPNLLYAFYQMQFCGVTAAIIMGAVAERGRLL  171
               +G+IGNL                  +P+ L+  +QM F      I+ GAVAER +  
Sbjct  61   YGFSGFIGNLGVSAAGIQWGT-------LPDGLFFLFQMMFAATAITIVSGAVAERIKFS  113

Query  172  PAMVFTFIWATIVYCPMVCWVWNVNGWAFKYGVL-DYAGGGPVEIGSGMAALAYSMVLGR  230
              ++F+ +  T+VY P+  WVW   GW  K GVL D+AG   V I  G A LA ++VLG 
Sbjct  114  AYLLFSALLGTLVYPPVAHWVWGEGGWLAKLGVLVDFAGSTVVHIFGGYAGLAAALVLGP  173

Query  231  RQER---MMLNFRPHNVSLILLGTVFLWFGWLGFNGGSSFGANIRA-TVACWNTNLTAAF  286
            R  R         PHN+   +LGT  LWFGW GFN GS+  AN RA  +A  NTNL AA 
Sbjct  174  RIGRFTGKNEAITPHNLPFAVLGTFLLWFGWFGFNAGSALTANGRARAIAAVNTNLAAAG  233

Query  287  GAITWVLLDWRLARKWSMVGWCSGTISGLVAATPASGFLTPWASVILGIVTGVVCNYATK  346
            G +T +L+      K +M+G  +G ++GLVA TPA G +TPW ++I+G++ GV+     K
Sbjct  234  GGLTALLISRLKTGKPNMLGLANGALAGLVAITPACGVVTPWGALIIGLIAGVLSVLGYK  293

Query  347  -VKYWIRIDDSMDVFAEHGVAGIIGLIFNALFADDAIVGLDGVNTGTGVGGWVIHNYKQL  405
             +K  + IDD +DVF  HGV GI G I   +FA   +            GG +  N KQL
Sbjct  294  FLKEKLGIDDPLDVFPVHGVGGIWGGIAVGIFAAPYVNT------SGIYGGLLYGNGKQL  347

Query  406  YVQIAFIVASCAYSFVVSAIIAYVINAIPGLKLRASEEAELLGMDDDQLGEFAY  459
             VQ+  I    AY+F V+ I+  ++    G  LR SEE E +G+D  + GE AY
Sbjct  348  GVQLIGIAVILAYAFGVTFILGLLLGLTLG--LRVSEEEEEVGLDVAEHGETAY  399



Lambda      K        H        a         alpha
   0.322    0.138    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 702381160


Query= TCONS_00017607

Length=901
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462425 pfam08318, COG4, COG4 transport protein. This region i...  493     2e-169


>CDD:462425 pfam08318, COG4, COG4 transport protein.  This region is found 
in yeast oligomeric golgi complex component 4 which is involved 
in ER to Golgi an intra Golgi transport.
Length=326

 Score = 493 bits (1271),  Expect = 2e-169, Method: Composition-based stats.
 Identities = 176/360 (49%), Positives = 229/360 (64%), Gaps = 35/360 (10%)

Query  250  LDNAAESLCGLFLREFDKAVKENDGAKITRFFKLFPLIGRSEVGLDVYGRYVCQGVASRA  309
            L+ A ESLC +FLREFD+A KE D A+ITRFFKLFPLIG+ E GLD Y +YVCQ +A RA
Sbjct  1    LEEARESLCEIFLREFDEAAKERDVAEITRFFKLFPLIGQEEEGLDAYSKYVCQIIAERA  60

Query  310  RANLN-AGTGGAQSKDGFFYANALTKLFEHIAQLIDGHGGLVERHYGPRKMTRVIERLQL  368
            R NL  A +     +   FYA+ALTKLFEHIAQ+I+ H  LVE++YGP KM +VIERLQ 
Sbjct  61   RKNLKSALSTDDDRRSPLFYADALTKLFEHIAQIIEQHQPLVEKYYGPGKMLKVIERLQK  120

Query  369  EADLQGGIILDTWSDERHIDRKLTDIKSYAFTFLVQSFLPAQRSATPRSNSPATRDGLPA  428
            E D QGGIILDT+ +ER +DRKL DIKSY F+    S      +    S+S         
Sbjct  121  ECDRQGGIILDTFEEERRLDRKLQDIKSYPFSPRSNSPAAGSSTRNSGSSS--------E  172

Query  429  EDEGVDMKEIDGLLNEMAVMLSRWSLYCRFIAETCNVRYLTASTSLCMDVFGKLTLCKAT  488
            ++EGVD +EID LL+E+++MLSRWSLYCRF+A                         K+ 
Sbjct  173  DEEGVDPREIDALLSEISLMLSRWSLYCRFLARKLEDEDNE----------------KSE  216

Query  489  EDESQKFTPPKFLQEASLSKKITDRLINPFNTMTTFFFRRSVEKAFQLDEQPSGLTLHPQ  548
            ED+ +    PK L+ ++LSKK++  L++ +  + TFFFRRSVEKA QLDE PS       
Sbjct  217  EDDEEPLELPKLLRNSNLSKKVSQELLSYYEPLETFFFRRSVEKAIQLDELPS-------  269

Query  549  KPLKADPPHITSAVDDIMYIVNKVLQQSLATSQISVVTNVVPTLGRVLGSDFIGMTQRKM  608
                   P  +S VDD+ YI+ KVL+++L+T  + VV  V+  L RVL +DFIG+ QRK+
Sbjct  270  ---PPSSPPTSSMVDDVFYILKKVLRRALSTGSLDVVCAVINNLARVLENDFIGVLQRKL  326



Lambda      K        H        a         alpha
   0.318    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1157024284


Query= TCONS_00011256

Length=425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  237     6e-78


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 237 bits (607),  Expect = 6e-78, Method: Composition-based stats.
 Identities = 97/182 (53%), Positives = 116/182 (64%), Gaps = 3/182 (2%)

Query  43   GAGISTSAGIPDFRSPDTGLYSNLAFLDLPEPEDVFDISYFRENPRPFYALARELAPGRY  102
            GAGIST +GIPDFRS D GLY+ LA  +L  PE  F       +P PFY +AREL PG  
Sbjct  1    GAGISTESGIPDFRS-DDGLYAKLAPEELASPEAFFSNPELVWDPEPFYNIARELLPGEA  59

Query  103  RPTIAHSFVKLLHDKGLLLKHFTQNIDCLERLAGVPGEKIVEAHGSFASQHCIDCKAAYP  162
            +P  AH F+  L DKG LL+  TQNID L   AG   +K+VE HGSFA   C+ C   Y 
Sbjct  60   QPNPAHYFIAKLEDKGKLLRLITQNIDGLHERAGS--KKVVELHGSFAKARCVSCHQKYT  117

Query  163  GPQMKEAIAKGEVPHCPHCNGFVKPDIVFFGEALPEEFHANRSLPEQADLCIVMGTSLTV  222
            G  + E I   +VPHCP C G +KPDIVFFGE LP++FH      E+ADL IV+GTSL V
Sbjct  118  GETLYERIRPEKVPHCPQCGGLLKPDIVFFGENLPDKFHRAYEDLEEADLLIVIGTSLKV  177

Query  223  HP  224
            +P
Sbjct  178  YP  179



Lambda      K        H        a         alpha
   0.317    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0735    0.140     1.90     42.6     43.6 

Effective search space used: 521922912


Query= TCONS_00011258

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  80.0    5e-19


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 80.0 bits (198),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 40/55 (73%), Gaps = 0/55 (0%)

Query  5    IAKGEVPHCPHCNGFVKPDIVFFGEALPEEFHANRSLPEQADLCIVMGTSLTVHP  59
            I   +VPHCP C G +KPDIVFFGE LP++FH      E+ADL IV+GTSL V+P
Sbjct  125  IRPEKVPHCPQCGGLLKPDIVFFGENLPDKFHRAYEDLEEADLLIVIGTSLKVYP  179



Lambda      K        H        a         alpha
   0.317    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00011257

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  80.0    5e-19


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 80.0 bits (198),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 40/55 (73%), Gaps = 0/55 (0%)

Query  5    IAKGEVPHCPHCNGFVKPDIVFFGEALPEEFHANRSLPEQADLCIVMGTSLTVHP  59
            I   +VPHCP C G +KPDIVFFGE LP++FH      E+ADL IV+GTSL V+P
Sbjct  125  IRPEKVPHCPQCGGLLKPDIVFFGENLPDKFHRAYEDLEEADLLIVIGTSLKVYP  179



Lambda      K        H        a         alpha
   0.317    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00017608

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00011266

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  332     2e-113
CDD:459774 pfam00349, Hexokinase_1, Hexokinase. Hexokinase (EC:2....  311     9e-106


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 332 bits (854),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 123/244 (50%), Positives = 164/244 (67%), Gaps = 11/244 (5%)

Query  227  KIGCIFGTGVNAAYMENVGSVPKLAHMNLPPDMPVAINCEYGAFDNEHV-VLPLTKYDHI  285
            +IG I GTG NAAY+E V ++PKL    LP    + IN E+GAF +  +  LP T+YD  
Sbjct  1    RIGLILGTGTNAAYVEKVSNIPKLEG-KLPKSGEMIINTEWGAFGDNGLLPLPRTEYDKE  59

Query  286  IDRDSPRPGQQAFEKMTAGLYLGEIFRLALIDLLDSRPGLIFQNQDTSKLRKPYLLDASF  345
            +D +SP PG Q FEKM +G+YLGE+ RL L+DL +   GL+F+ Q + KL+ PY LD SF
Sbjct  60   LDAESPNPGFQPFEKMISGMYLGELVRLVLLDLAEE--GLLFKGQ-SEKLKTPYSLDTSF  116

Query  346  LAAIEEDPYENLQETQELFERELNIK-PTLAELEMIRRLAELIGTRAARLSACGVAAICK  404
            L+AIE DP E+L+ T+E+ E  L I+  T  + +++RR+ E + TRAARL A G+AAI K
Sbjct  117  LSAIESDPSEDLETTREILEELLGIETVTEEDRKIVRRICEAVSTRAARLVAAGIAAILK  176

Query  405  K-KNIESCHVGADGSVFTKYPHFKARGAQALREILDWAPNEKDKVTIMAAEDGSGVGAAL  463
            K    +   VG DGSV+ KYP F+ R  +ALRE+L       DKV ++ AEDGSGVGAAL
Sbjct  177  KIGRDKKVTVGVDGSVYEKYPGFRERLQEALRELLG----PGDKVVLVLAEDGSGVGAAL  232

Query  464  IAAL  467
            IAA+
Sbjct  233  IAAV  236


>CDD:459774 pfam00349, Hexokinase_1, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam03727. Some members of the family have two 
copies of each of these domains.
Length=197

 Score = 311 bits (800),  Expect = 9e-106, Method: Composition-based stats.
 Identities = 106/198 (54%), Positives = 143/198 (72%), Gaps = 3/198 (2%)

Query  26   QIKDFEEMFTVDKAKLKQVVDHFVKELDKGLSVEG-GNIPMNVTWVMGFPDGDEQGTFLA  84
            ++++  + F +   KLK++VD FV+E++KGL+ EG  ++ M  T+V   P G E+GTFLA
Sbjct  1    ELEELLKQFALSDEKLKEIVDRFVEEMEKGLAKEGSSSLKMLPTYVTSLPTGTEKGTFLA  60

Query  85   LDMGGTNLRVCEITLTEEKGGFDICQSKYRMPEELKTGTAEELWEYIADCIQQFIEFHHG  144
            LD+GGTN RVC + L    G F+I Q KY++PEEL TGT EEL+++IADCI +F++ H  
Sbjct  61   LDLGGTNFRVCLVEL-GGDGKFEITQEKYKIPEELMTGTGEELFDFIADCIAEFLKEHGL  119

Query  145  EE-GLTSLPLGFTFSYPATQEYIDHGILQRWTKGFDIDGVEGQDVVPPLEETLKRKGLPI  203
            E+     LPLGFTFS+P  Q  +D G L RWTKGFDI GV G+DVV  L+E L+R+GLP+
Sbjct  120  EDFEEKELPLGFTFSFPVEQTSLDSGTLIRWTKGFDIPGVVGKDVVQLLQEALERRGLPV  179

Query  204  KVAALINDTTGTLIASAY  221
            KV AL+NDT GTL+A AY
Sbjct  180  KVVALVNDTVGTLMAGAY  197



Lambda      K        H        a         alpha
   0.318    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00011259

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  328     3e-115


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 328 bits (844),  Expect = 3e-115, Method: Composition-based stats.
 Identities = 123/244 (50%), Positives = 164/244 (67%), Gaps = 11/244 (5%)

Query  2    KIGCIFGTGVNAAYMENVGSVPKLAHMNLPPDMPVAINCEYGAFDNEHV-VLPLTKYDHI  60
            +IG I GTG NAAY+E V ++PKL    LP    + IN E+GAF +  +  LP T+YD  
Sbjct  1    RIGLILGTGTNAAYVEKVSNIPKLEG-KLPKSGEMIINTEWGAFGDNGLLPLPRTEYDKE  59

Query  61   IDRDSPRPGQQAFEKMTAGLYLGEIFRLALIDLLDSRPGLIFQNQDTSKLRKPYLLDASF  120
            +D +SP PG Q FEKM +G+YLGE+ RL L+DL +   GL+F+ Q + KL+ PY LD SF
Sbjct  60   LDAESPNPGFQPFEKMISGMYLGELVRLVLLDLAEE--GLLFKGQ-SEKLKTPYSLDTSF  116

Query  121  LAAIEEDPYENLQETQELFERELNIK-PTLAELEMIRRLAELIGTRAARLSACGVAAICK  179
            L+AIE DP E+L+ T+E+ E  L I+  T  + +++RR+ E + TRAARL A G+AAI K
Sbjct  117  LSAIESDPSEDLETTREILEELLGIETVTEEDRKIVRRICEAVSTRAARLVAAGIAAILK  176

Query  180  K-KNIESCHVGADGSVFTKYPHFKARGAQALREILDWAPNEKDKVTIMAAEDGSGVGAAL  238
            K    +   VG DGSV+ KYP F+ R  +ALRE+L       DKV ++ AEDGSGVGAAL
Sbjct  177  KIGRDKKVTVGVDGSVYEKYPGFRERLQEALRELLG----PGDKVVLVLAEDGSGVGAAL  232

Query  239  IAAL  242
            IAA+
Sbjct  233  IAAV  236



Lambda      K        H        a         alpha
   0.320    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00011260

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  332     2e-113
CDD:459774 pfam00349, Hexokinase_1, Hexokinase. Hexokinase (EC:2....  311     9e-106


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 332 bits (854),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 123/244 (50%), Positives = 164/244 (67%), Gaps = 11/244 (5%)

Query  227  KIGCIFGTGVNAAYMENVGSVPKLAHMNLPPDMPVAINCEYGAFDNEHV-VLPLTKYDHI  285
            +IG I GTG NAAY+E V ++PKL    LP    + IN E+GAF +  +  LP T+YD  
Sbjct  1    RIGLILGTGTNAAYVEKVSNIPKLEG-KLPKSGEMIINTEWGAFGDNGLLPLPRTEYDKE  59

Query  286  IDRDSPRPGQQAFEKMTAGLYLGEIFRLALIDLLDSRPGLIFQNQDTSKLRKPYLLDASF  345
            +D +SP PG Q FEKM +G+YLGE+ RL L+DL +   GL+F+ Q + KL+ PY LD SF
Sbjct  60   LDAESPNPGFQPFEKMISGMYLGELVRLVLLDLAEE--GLLFKGQ-SEKLKTPYSLDTSF  116

Query  346  LAAIEEDPYENLQETQELFERELNIK-PTLAELEMIRRLAELIGTRAARLSACGVAAICK  404
            L+AIE DP E+L+ T+E+ E  L I+  T  + +++RR+ E + TRAARL A G+AAI K
Sbjct  117  LSAIESDPSEDLETTREILEELLGIETVTEEDRKIVRRICEAVSTRAARLVAAGIAAILK  176

Query  405  K-KNIESCHVGADGSVFTKYPHFKARGAQALREILDWAPNEKDKVTIMAAEDGSGVGAAL  463
            K    +   VG DGSV+ KYP F+ R  +ALRE+L       DKV ++ AEDGSGVGAAL
Sbjct  177  KIGRDKKVTVGVDGSVYEKYPGFRERLQEALRELLG----PGDKVVLVLAEDGSGVGAAL  232

Query  464  IAAL  467
            IAA+
Sbjct  233  IAAV  236


>CDD:459774 pfam00349, Hexokinase_1, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam03727. Some members of the family have two 
copies of each of these domains.
Length=197

 Score = 311 bits (800),  Expect = 9e-106, Method: Composition-based stats.
 Identities = 106/198 (54%), Positives = 143/198 (72%), Gaps = 3/198 (2%)

Query  26   QIKDFEEMFTVDKAKLKQVVDHFVKELDKGLSVEG-GNIPMNVTWVMGFPDGDEQGTFLA  84
            ++++  + F +   KLK++VD FV+E++KGL+ EG  ++ M  T+V   P G E+GTFLA
Sbjct  1    ELEELLKQFALSDEKLKEIVDRFVEEMEKGLAKEGSSSLKMLPTYVTSLPTGTEKGTFLA  60

Query  85   LDMGGTNLRVCEITLTEEKGGFDICQSKYRMPEELKTGTAEELWEYIADCIQQFIEFHHG  144
            LD+GGTN RVC + L    G F+I Q KY++PEEL TGT EEL+++IADCI +F++ H  
Sbjct  61   LDLGGTNFRVCLVEL-GGDGKFEITQEKYKIPEELMTGTGEELFDFIADCIAEFLKEHGL  119

Query  145  EE-GLTSLPLGFTFSYPATQEYIDHGILQRWTKGFDIDGVEGQDVVPPLEETLKRKGLPI  203
            E+     LPLGFTFS+P  Q  +D G L RWTKGFDI GV G+DVV  L+E L+R+GLP+
Sbjct  120  EDFEEKELPLGFTFSFPVEQTSLDSGTLIRWTKGFDIPGVVGKDVVQLLQEALERRGLPV  179

Query  204  KVAALINDTTGTLIASAY  221
            KV AL+NDT GTL+A AY
Sbjct  180  KVVALVNDTVGTLMAGAY  197



Lambda      K        H        a         alpha
   0.318    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00017609

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  332     2e-113
CDD:459774 pfam00349, Hexokinase_1, Hexokinase. Hexokinase (EC:2....  311     9e-106


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 332 bits (854),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 123/244 (50%), Positives = 164/244 (67%), Gaps = 11/244 (5%)

Query  227  KIGCIFGTGVNAAYMENVGSVPKLAHMNLPPDMPVAINCEYGAFDNEHV-VLPLTKYDHI  285
            +IG I GTG NAAY+E V ++PKL    LP    + IN E+GAF +  +  LP T+YD  
Sbjct  1    RIGLILGTGTNAAYVEKVSNIPKLEG-KLPKSGEMIINTEWGAFGDNGLLPLPRTEYDKE  59

Query  286  IDRDSPRPGQQAFEKMTAGLYLGEIFRLALIDLLDSRPGLIFQNQDTSKLRKPYLLDASF  345
            +D +SP PG Q FEKM +G+YLGE+ RL L+DL +   GL+F+ Q + KL+ PY LD SF
Sbjct  60   LDAESPNPGFQPFEKMISGMYLGELVRLVLLDLAEE--GLLFKGQ-SEKLKTPYSLDTSF  116

Query  346  LAAIEEDPYENLQETQELFERELNIK-PTLAELEMIRRLAELIGTRAARLSACGVAAICK  404
            L+AIE DP E+L+ T+E+ E  L I+  T  + +++RR+ E + TRAARL A G+AAI K
Sbjct  117  LSAIESDPSEDLETTREILEELLGIETVTEEDRKIVRRICEAVSTRAARLVAAGIAAILK  176

Query  405  K-KNIESCHVGADGSVFTKYPHFKARGAQALREILDWAPNEKDKVTIMAAEDGSGVGAAL  463
            K    +   VG DGSV+ KYP F+ R  +ALRE+L       DKV ++ AEDGSGVGAAL
Sbjct  177  KIGRDKKVTVGVDGSVYEKYPGFRERLQEALRELLG----PGDKVVLVLAEDGSGVGAAL  232

Query  464  IAAL  467
            IAA+
Sbjct  233  IAAV  236


>CDD:459774 pfam00349, Hexokinase_1, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam03727. Some members of the family have two 
copies of each of these domains.
Length=197

 Score = 311 bits (800),  Expect = 9e-106, Method: Composition-based stats.
 Identities = 106/198 (54%), Positives = 143/198 (72%), Gaps = 3/198 (2%)

Query  26   QIKDFEEMFTVDKAKLKQVVDHFVKELDKGLSVEG-GNIPMNVTWVMGFPDGDEQGTFLA  84
            ++++  + F +   KLK++VD FV+E++KGL+ EG  ++ M  T+V   P G E+GTFLA
Sbjct  1    ELEELLKQFALSDEKLKEIVDRFVEEMEKGLAKEGSSSLKMLPTYVTSLPTGTEKGTFLA  60

Query  85   LDMGGTNLRVCEITLTEEKGGFDICQSKYRMPEELKTGTAEELWEYIADCIQQFIEFHHG  144
            LD+GGTN RVC + L    G F+I Q KY++PEEL TGT EEL+++IADCI +F++ H  
Sbjct  61   LDLGGTNFRVCLVEL-GGDGKFEITQEKYKIPEELMTGTGEELFDFIADCIAEFLKEHGL  119

Query  145  EE-GLTSLPLGFTFSYPATQEYIDHGILQRWTKGFDIDGVEGQDVVPPLEETLKRKGLPI  203
            E+     LPLGFTFS+P  Q  +D G L RWTKGFDI GV G+DVV  L+E L+R+GLP+
Sbjct  120  EDFEEKELPLGFTFSFPVEQTSLDSGTLIRWTKGFDIPGVVGKDVVQLLQEALERRGLPV  179

Query  204  KVAALINDTTGTLIASAY  221
            KV AL+NDT GTL+A AY
Sbjct  180  KVVALVNDTVGTLMAGAY  197



Lambda      K        H        a         alpha
   0.318    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00011261

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  330     1e-113
CDD:459774 pfam00349, Hexokinase_1, Hexokinase. Hexokinase (EC:2....  265     1e-88 


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 330 bits (850),  Expect = 1e-113, Method: Composition-based stats.
 Identities = 123/244 (50%), Positives = 164/244 (67%), Gaps = 11/244 (5%)

Query  163  KIGCIFGTGVNAAYMENVGSVPKLAHMNLPPDMPVAINCEYGAFDNEHV-VLPLTKYDHI  221
            +IG I GTG NAAY+E V ++PKL    LP    + IN E+GAF +  +  LP T+YD  
Sbjct  1    RIGLILGTGTNAAYVEKVSNIPKLEG-KLPKSGEMIINTEWGAFGDNGLLPLPRTEYDKE  59

Query  222  IDRDSPRPGQQAFEKMTAGLYLGEIFRLALIDLLDSRPGLIFQNQDTSKLRKPYLLDASF  281
            +D +SP PG Q FEKM +G+YLGE+ RL L+DL +   GL+F+ Q + KL+ PY LD SF
Sbjct  60   LDAESPNPGFQPFEKMISGMYLGELVRLVLLDLAEE--GLLFKGQ-SEKLKTPYSLDTSF  116

Query  282  LAAIEEDPYENLQETQELFERELNIK-PTLAELEMIRRLAELIGTRAARLSACGVAAICK  340
            L+AIE DP E+L+ T+E+ E  L I+  T  + +++RR+ E + TRAARL A G+AAI K
Sbjct  117  LSAIESDPSEDLETTREILEELLGIETVTEEDRKIVRRICEAVSTRAARLVAAGIAAILK  176

Query  341  K-KNIESCHVGADGSVFTKYPHFKARGAQALREILDWAPNEKDKVTIMAAEDGSGVGAAL  399
            K    +   VG DGSV+ KYP F+ R  +ALRE+L       DKV ++ AEDGSGVGAAL
Sbjct  177  KIGRDKKVTVGVDGSVYEKYPGFRERLQEALRELLG----PGDKVVLVLAEDGSGVGAAL  232

Query  400  IAAL  403
            IAA+
Sbjct  233  IAAV  236


>CDD:459774 pfam00349, Hexokinase_1, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam03727. Some members of the family have two 
copies of each of these domains.
Length=197

 Score = 265 bits (680),  Expect = 1e-88, Method: Composition-based stats.
 Identities = 92/158 (58%), Positives = 115/158 (73%), Gaps = 2/158 (1%)

Query  1    MNVTWVMGFPDGDEQGTFLALDMGGTNLRVCEITLTEEKGGFDICQSKYRMPEELKTGTA  60
            M  T+V   P G E+GTFLALD+GGTN RVC + L    G F+I Q KY++PEEL TGT 
Sbjct  41   MLPTYVTSLPTGTEKGTFLALDLGGTNFRVCLVEL-GGDGKFEITQEKYKIPEELMTGTG  99

Query  61   EELWEYIADCIQQFIEFHHGEE-GLTSLPLGFTFSYPATQEYIDHGILQRWTKGFDIDGV  119
            EEL+++IADCI +F++ H  E+     LPLGFTFS+P  Q  +D G L RWTKGFDI GV
Sbjct  100  EELFDFIADCIAEFLKEHGLEDFEEKELPLGFTFSFPVEQTSLDSGTLIRWTKGFDIPGV  159

Query  120  EGQDVVPPLEETLKRKGLPIKVAALINDTTGTLIASAY  157
             G+DVV  L+E L+R+GLP+KV AL+NDT GTL+A AY
Sbjct  160  VGKDVVQLLQEALERRGLPVKVVALVNDTVGTLMAGAY  197



Lambda      K        H        a         alpha
   0.319    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00011262

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459774 pfam00349, Hexokinase_1, Hexokinase. Hexokinase (EC:2....  289     4e-101


>CDD:459774 pfam00349, Hexokinase_1, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam03727. Some members of the family have two 
copies of each of these domains.
Length=197

 Score = 289 bits (741),  Expect = 4e-101, Method: Composition-based stats.
 Identities = 100/191 (52%), Positives = 136/191 (71%), Gaps = 3/191 (2%)

Query  26   QIKDFEEMFTVDKAKLKQVVDHFVKELDKGLSVEG-GNIPMNVTWVMGFPDGDEQGTFLA  84
            ++++  + F +   KLK++VD FV+E++KGL+ EG  ++ M  T+V   P G E+GTFLA
Sbjct  1    ELEELLKQFALSDEKLKEIVDRFVEEMEKGLAKEGSSSLKMLPTYVTSLPTGTEKGTFLA  60

Query  85   LDMGGTNLRVCEITLTEEKGGFDICQSKYRMPEELKTGTAEELWEYIADCIQQFIEFHHG  144
            LD+GGTN RVC + L    G F+I Q KY++PEEL TGT EEL+++IADCI +F++ H  
Sbjct  61   LDLGGTNFRVCLVEL-GGDGKFEITQEKYKIPEELMTGTGEELFDFIADCIAEFLKEHGL  119

Query  145  EE-GLTSLPLGFTFSYPATQEYIDHGILQRWTKGFDIDGVEGQDVVPPLEETLKRKVLPI  203
            E+     LPLGFTFS+P  Q  +D G L RWTKGFDI GV G+DVV  L+E L+R+ LP+
Sbjct  120  EDFEEKELPLGFTFSFPVEQTSLDSGTLIRWTKGFDIPGVVGKDVVQLLQEALERRGLPV  179

Query  204  KVAALINDTTG  214
            KV AL+NDT G
Sbjct  180  KVVALVNDTVG  190



Lambda      K        H        a         alpha
   0.318    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00017610

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  330     1e-113
CDD:459774 pfam00349, Hexokinase_1, Hexokinase. Hexokinase (EC:2....  265     1e-88 


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 330 bits (850),  Expect = 1e-113, Method: Composition-based stats.
 Identities = 123/244 (50%), Positives = 164/244 (67%), Gaps = 11/244 (5%)

Query  163  KIGCIFGTGVNAAYMENVGSVPKLAHMNLPPDMPVAINCEYGAFDNEHV-VLPLTKYDHI  221
            +IG I GTG NAAY+E V ++PKL    LP    + IN E+GAF +  +  LP T+YD  
Sbjct  1    RIGLILGTGTNAAYVEKVSNIPKLEG-KLPKSGEMIINTEWGAFGDNGLLPLPRTEYDKE  59

Query  222  IDRDSPRPGQQAFEKMTAGLYLGEIFRLALIDLLDSRPGLIFQNQDTSKLRKPYLLDASF  281
            +D +SP PG Q FEKM +G+YLGE+ RL L+DL +   GL+F+ Q + KL+ PY LD SF
Sbjct  60   LDAESPNPGFQPFEKMISGMYLGELVRLVLLDLAEE--GLLFKGQ-SEKLKTPYSLDTSF  116

Query  282  LAAIEEDPYENLQETQELFERELNIK-PTLAELEMIRRLAELIGTRAARLSACGVAAICK  340
            L+AIE DP E+L+ T+E+ E  L I+  T  + +++RR+ E + TRAARL A G+AAI K
Sbjct  117  LSAIESDPSEDLETTREILEELLGIETVTEEDRKIVRRICEAVSTRAARLVAAGIAAILK  176

Query  341  K-KNIESCHVGADGSVFTKYPHFKARGAQALREILDWAPNEKDKVTIMAAEDGSGVGAAL  399
            K    +   VG DGSV+ KYP F+ R  +ALRE+L       DKV ++ AEDGSGVGAAL
Sbjct  177  KIGRDKKVTVGVDGSVYEKYPGFRERLQEALRELLG----PGDKVVLVLAEDGSGVGAAL  232

Query  400  IAAL  403
            IAA+
Sbjct  233  IAAV  236


>CDD:459774 pfam00349, Hexokinase_1, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam03727. Some members of the family have two 
copies of each of these domains.
Length=197

 Score = 265 bits (680),  Expect = 1e-88, Method: Composition-based stats.
 Identities = 92/158 (58%), Positives = 115/158 (73%), Gaps = 2/158 (1%)

Query  1    MNVTWVMGFPDGDEQGTFLALDMGGTNLRVCEITLTEEKGGFDICQSKYRMPEELKTGTA  60
            M  T+V   P G E+GTFLALD+GGTN RVC + L    G F+I Q KY++PEEL TGT 
Sbjct  41   MLPTYVTSLPTGTEKGTFLALDLGGTNFRVCLVEL-GGDGKFEITQEKYKIPEELMTGTG  99

Query  61   EELWEYIADCIQQFIEFHHGEE-GLTSLPLGFTFSYPATQEYIDHGILQRWTKGFDIDGV  119
            EEL+++IADCI +F++ H  E+     LPLGFTFS+P  Q  +D G L RWTKGFDI GV
Sbjct  100  EELFDFIADCIAEFLKEHGLEDFEEKELPLGFTFSFPVEQTSLDSGTLIRWTKGFDIPGV  159

Query  120  EGQDVVPPLEETLKRKGLPIKVAALINDTTGTLIASAY  157
             G+DVV  L+E L+R+GLP+KV AL+NDT GTL+A AY
Sbjct  160  VGKDVVQLLQEALERRGLPVKVVALVNDTVGTLMAGAY  197



Lambda      K        H        a         alpha
   0.319    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00017611

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  330     1e-113
CDD:459774 pfam00349, Hexokinase_1, Hexokinase. Hexokinase (EC:2....  265     1e-88 


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 330 bits (850),  Expect = 1e-113, Method: Composition-based stats.
 Identities = 123/244 (50%), Positives = 164/244 (67%), Gaps = 11/244 (5%)

Query  163  KIGCIFGTGVNAAYMENVGSVPKLAHMNLPPDMPVAINCEYGAFDNEHV-VLPLTKYDHI  221
            +IG I GTG NAAY+E V ++PKL    LP    + IN E+GAF +  +  LP T+YD  
Sbjct  1    RIGLILGTGTNAAYVEKVSNIPKLEG-KLPKSGEMIINTEWGAFGDNGLLPLPRTEYDKE  59

Query  222  IDRDSPRPGQQAFEKMTAGLYLGEIFRLALIDLLDSRPGLIFQNQDTSKLRKPYLLDASF  281
            +D +SP PG Q FEKM +G+YLGE+ RL L+DL +   GL+F+ Q + KL+ PY LD SF
Sbjct  60   LDAESPNPGFQPFEKMISGMYLGELVRLVLLDLAEE--GLLFKGQ-SEKLKTPYSLDTSF  116

Query  282  LAAIEEDPYENLQETQELFERELNIK-PTLAELEMIRRLAELIGTRAARLSACGVAAICK  340
            L+AIE DP E+L+ T+E+ E  L I+  T  + +++RR+ E + TRAARL A G+AAI K
Sbjct  117  LSAIESDPSEDLETTREILEELLGIETVTEEDRKIVRRICEAVSTRAARLVAAGIAAILK  176

Query  341  K-KNIESCHVGADGSVFTKYPHFKARGAQALREILDWAPNEKDKVTIMAAEDGSGVGAAL  399
            K    +   VG DGSV+ KYP F+ R  +ALRE+L       DKV ++ AEDGSGVGAAL
Sbjct  177  KIGRDKKVTVGVDGSVYEKYPGFRERLQEALRELLG----PGDKVVLVLAEDGSGVGAAL  232

Query  400  IAAL  403
            IAA+
Sbjct  233  IAAV  236


>CDD:459774 pfam00349, Hexokinase_1, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam03727. Some members of the family have two 
copies of each of these domains.
Length=197

 Score = 265 bits (680),  Expect = 1e-88, Method: Composition-based stats.
 Identities = 92/158 (58%), Positives = 115/158 (73%), Gaps = 2/158 (1%)

Query  1    MNVTWVMGFPDGDEQGTFLALDMGGTNLRVCEITLTEEKGGFDICQSKYRMPEELKTGTA  60
            M  T+V   P G E+GTFLALD+GGTN RVC + L    G F+I Q KY++PEEL TGT 
Sbjct  41   MLPTYVTSLPTGTEKGTFLALDLGGTNFRVCLVEL-GGDGKFEITQEKYKIPEELMTGTG  99

Query  61   EELWEYIADCIQQFIEFHHGEE-GLTSLPLGFTFSYPATQEYIDHGILQRWTKGFDIDGV  119
            EEL+++IADCI +F++ H  E+     LPLGFTFS+P  Q  +D G L RWTKGFDI GV
Sbjct  100  EELFDFIADCIAEFLKEHGLEDFEEKELPLGFTFSFPVEQTSLDSGTLIRWTKGFDIPGV  159

Query  120  EGQDVVPPLEETLKRKGLPIKVAALINDTTGTLIASAY  157
             G+DVV  L+E L+R+GLP+KV AL+NDT GTL+A AY
Sbjct  160  VGKDVVQLLQEALERRGLPVKVVALVNDTVGTLMAGAY  197



Lambda      K        H        a         alpha
   0.319    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00017612

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  332     2e-113
CDD:459774 pfam00349, Hexokinase_1, Hexokinase. Hexokinase (EC:2....  311     9e-106


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 332 bits (854),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 123/244 (50%), Positives = 164/244 (67%), Gaps = 11/244 (5%)

Query  227  KIGCIFGTGVNAAYMENVGSVPKLAHMNLPPDMPVAINCEYGAFDNEHV-VLPLTKYDHI  285
            +IG I GTG NAAY+E V ++PKL    LP    + IN E+GAF +  +  LP T+YD  
Sbjct  1    RIGLILGTGTNAAYVEKVSNIPKLEG-KLPKSGEMIINTEWGAFGDNGLLPLPRTEYDKE  59

Query  286  IDRDSPRPGQQAFEKMTAGLYLGEIFRLALIDLLDSRPGLIFQNQDTSKLRKPYLLDASF  345
            +D +SP PG Q FEKM +G+YLGE+ RL L+DL +   GL+F+ Q + KL+ PY LD SF
Sbjct  60   LDAESPNPGFQPFEKMISGMYLGELVRLVLLDLAEE--GLLFKGQ-SEKLKTPYSLDTSF  116

Query  346  LAAIEEDPYENLQETQELFERELNIK-PTLAELEMIRRLAELIGTRAARLSACGVAAICK  404
            L+AIE DP E+L+ T+E+ E  L I+  T  + +++RR+ E + TRAARL A G+AAI K
Sbjct  117  LSAIESDPSEDLETTREILEELLGIETVTEEDRKIVRRICEAVSTRAARLVAAGIAAILK  176

Query  405  K-KNIESCHVGADGSVFTKYPHFKARGAQALREILDWAPNEKDKVTIMAAEDGSGVGAAL  463
            K    +   VG DGSV+ KYP F+ R  +ALRE+L       DKV ++ AEDGSGVGAAL
Sbjct  177  KIGRDKKVTVGVDGSVYEKYPGFRERLQEALRELLG----PGDKVVLVLAEDGSGVGAAL  232

Query  464  IAAL  467
            IAA+
Sbjct  233  IAAV  236


>CDD:459774 pfam00349, Hexokinase_1, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam03727. Some members of the family have two 
copies of each of these domains.
Length=197

 Score = 311 bits (800),  Expect = 9e-106, Method: Composition-based stats.
 Identities = 106/198 (54%), Positives = 143/198 (72%), Gaps = 3/198 (2%)

Query  26   QIKDFEEMFTVDKAKLKQVVDHFVKELDKGLSVEG-GNIPMNVTWVMGFPDGDEQGTFLA  84
            ++++  + F +   KLK++VD FV+E++KGL+ EG  ++ M  T+V   P G E+GTFLA
Sbjct  1    ELEELLKQFALSDEKLKEIVDRFVEEMEKGLAKEGSSSLKMLPTYVTSLPTGTEKGTFLA  60

Query  85   LDMGGTNLRVCEITLTEEKGGFDICQSKYRMPEELKTGTAEELWEYIADCIQQFIEFHHG  144
            LD+GGTN RVC + L    G F+I Q KY++PEEL TGT EEL+++IADCI +F++ H  
Sbjct  61   LDLGGTNFRVCLVEL-GGDGKFEITQEKYKIPEELMTGTGEELFDFIADCIAEFLKEHGL  119

Query  145  EE-GLTSLPLGFTFSYPATQEYIDHGILQRWTKGFDIDGVEGQDVVPPLEETLKRKGLPI  203
            E+     LPLGFTFS+P  Q  +D G L RWTKGFDI GV G+DVV  L+E L+R+GLP+
Sbjct  120  EDFEEKELPLGFTFSFPVEQTSLDSGTLIRWTKGFDIPGVVGKDVVQLLQEALERRGLPV  179

Query  204  KVAALINDTTGTLIASAY  221
            KV AL+NDT GTL+A AY
Sbjct  180  KVVALVNDTVGTLMAGAY  197



Lambda      K        H        a         alpha
   0.318    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00017613

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  332     2e-113
CDD:459774 pfam00349, Hexokinase_1, Hexokinase. Hexokinase (EC:2....  311     9e-106


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 332 bits (854),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 123/244 (50%), Positives = 164/244 (67%), Gaps = 11/244 (5%)

Query  227  KIGCIFGTGVNAAYMENVGSVPKLAHMNLPPDMPVAINCEYGAFDNEHV-VLPLTKYDHI  285
            +IG I GTG NAAY+E V ++PKL    LP    + IN E+GAF +  +  LP T+YD  
Sbjct  1    RIGLILGTGTNAAYVEKVSNIPKLEG-KLPKSGEMIINTEWGAFGDNGLLPLPRTEYDKE  59

Query  286  IDRDSPRPGQQAFEKMTAGLYLGEIFRLALIDLLDSRPGLIFQNQDTSKLRKPYLLDASF  345
            +D +SP PG Q FEKM +G+YLGE+ RL L+DL +   GL+F+ Q + KL+ PY LD SF
Sbjct  60   LDAESPNPGFQPFEKMISGMYLGELVRLVLLDLAEE--GLLFKGQ-SEKLKTPYSLDTSF  116

Query  346  LAAIEEDPYENLQETQELFERELNIK-PTLAELEMIRRLAELIGTRAARLSACGVAAICK  404
            L+AIE DP E+L+ T+E+ E  L I+  T  + +++RR+ E + TRAARL A G+AAI K
Sbjct  117  LSAIESDPSEDLETTREILEELLGIETVTEEDRKIVRRICEAVSTRAARLVAAGIAAILK  176

Query  405  K-KNIESCHVGADGSVFTKYPHFKARGAQALREILDWAPNEKDKVTIMAAEDGSGVGAAL  463
            K    +   VG DGSV+ KYP F+ R  +ALRE+L       DKV ++ AEDGSGVGAAL
Sbjct  177  KIGRDKKVTVGVDGSVYEKYPGFRERLQEALRELLG----PGDKVVLVLAEDGSGVGAAL  232

Query  464  IAAL  467
            IAA+
Sbjct  233  IAAV  236


>CDD:459774 pfam00349, Hexokinase_1, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam03727. Some members of the family have two 
copies of each of these domains.
Length=197

 Score = 311 bits (800),  Expect = 9e-106, Method: Composition-based stats.
 Identities = 106/198 (54%), Positives = 143/198 (72%), Gaps = 3/198 (2%)

Query  26   QIKDFEEMFTVDKAKLKQVVDHFVKELDKGLSVEG-GNIPMNVTWVMGFPDGDEQGTFLA  84
            ++++  + F +   KLK++VD FV+E++KGL+ EG  ++ M  T+V   P G E+GTFLA
Sbjct  1    ELEELLKQFALSDEKLKEIVDRFVEEMEKGLAKEGSSSLKMLPTYVTSLPTGTEKGTFLA  60

Query  85   LDMGGTNLRVCEITLTEEKGGFDICQSKYRMPEELKTGTAEELWEYIADCIQQFIEFHHG  144
            LD+GGTN RVC + L    G F+I Q KY++PEEL TGT EEL+++IADCI +F++ H  
Sbjct  61   LDLGGTNFRVCLVEL-GGDGKFEITQEKYKIPEELMTGTGEELFDFIADCIAEFLKEHGL  119

Query  145  EE-GLTSLPLGFTFSYPATQEYIDHGILQRWTKGFDIDGVEGQDVVPPLEETLKRKGLPI  203
            E+     LPLGFTFS+P  Q  +D G L RWTKGFDI GV G+DVV  L+E L+R+GLP+
Sbjct  120  EDFEEKELPLGFTFSFPVEQTSLDSGTLIRWTKGFDIPGVVGKDVVQLLQEALERRGLPV  179

Query  204  KVAALINDTTGTLIASAY  221
            KV AL+NDT GTL+A AY
Sbjct  180  KVVALVNDTVGTLMAGAY  197



Lambda      K        H        a         alpha
   0.318    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00011264

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  328     3e-115


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 328 bits (844),  Expect = 3e-115, Method: Composition-based stats.
 Identities = 123/244 (50%), Positives = 164/244 (67%), Gaps = 11/244 (5%)

Query  2    KIGCIFGTGVNAAYMENVGSVPKLAHMNLPPDMPVAINCEYGAFDNEHV-VLPLTKYDHI  60
            +IG I GTG NAAY+E V ++PKL    LP    + IN E+GAF +  +  LP T+YD  
Sbjct  1    RIGLILGTGTNAAYVEKVSNIPKLEG-KLPKSGEMIINTEWGAFGDNGLLPLPRTEYDKE  59

Query  61   IDRDSPRPGQQAFEKMTAGLYLGEIFRLALIDLLDSRPGLIFQNQDTSKLRKPYLLDASF  120
            +D +SP PG Q FEKM +G+YLGE+ RL L+DL +   GL+F+ Q + KL+ PY LD SF
Sbjct  60   LDAESPNPGFQPFEKMISGMYLGELVRLVLLDLAEE--GLLFKGQ-SEKLKTPYSLDTSF  116

Query  121  LAAIEEDPYENLQETQELFERELNIK-PTLAELEMIRRLAELIGTRAARLSACGVAAICK  179
            L+AIE DP E+L+ T+E+ E  L I+  T  + +++RR+ E + TRAARL A G+AAI K
Sbjct  117  LSAIESDPSEDLETTREILEELLGIETVTEEDRKIVRRICEAVSTRAARLVAAGIAAILK  176

Query  180  K-KNIESCHVGADGSVFTKYPHFKARGAQALREILDWAPNEKDKVTIMAAEDGSGVGAAL  238
            K    +   VG DGSV+ KYP F+ R  +ALRE+L       DKV ++ AEDGSGVGAAL
Sbjct  177  KIGRDKKVTVGVDGSVYEKYPGFRERLQEALRELLG----PGDKVVLVLAEDGSGVGAAL  232

Query  239  IAAL  242
            IAA+
Sbjct  233  IAAV  236



Lambda      K        H        a         alpha
   0.320    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00011265

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  332     2e-113
CDD:459774 pfam00349, Hexokinase_1, Hexokinase. Hexokinase (EC:2....  311     9e-106


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 332 bits (854),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 123/244 (50%), Positives = 164/244 (67%), Gaps = 11/244 (5%)

Query  227  KIGCIFGTGVNAAYMENVGSVPKLAHMNLPPDMPVAINCEYGAFDNEHV-VLPLTKYDHI  285
            +IG I GTG NAAY+E V ++PKL    LP    + IN E+GAF +  +  LP T+YD  
Sbjct  1    RIGLILGTGTNAAYVEKVSNIPKLEG-KLPKSGEMIINTEWGAFGDNGLLPLPRTEYDKE  59

Query  286  IDRDSPRPGQQAFEKMTAGLYLGEIFRLALIDLLDSRPGLIFQNQDTSKLRKPYLLDASF  345
            +D +SP PG Q FEKM +G+YLGE+ RL L+DL +   GL+F+ Q + KL+ PY LD SF
Sbjct  60   LDAESPNPGFQPFEKMISGMYLGELVRLVLLDLAEE--GLLFKGQ-SEKLKTPYSLDTSF  116

Query  346  LAAIEEDPYENLQETQELFERELNIK-PTLAELEMIRRLAELIGTRAARLSACGVAAICK  404
            L+AIE DP E+L+ T+E+ E  L I+  T  + +++RR+ E + TRAARL A G+AAI K
Sbjct  117  LSAIESDPSEDLETTREILEELLGIETVTEEDRKIVRRICEAVSTRAARLVAAGIAAILK  176

Query  405  K-KNIESCHVGADGSVFTKYPHFKARGAQALREILDWAPNEKDKVTIMAAEDGSGVGAAL  463
            K    +   VG DGSV+ KYP F+ R  +ALRE+L       DKV ++ AEDGSGVGAAL
Sbjct  177  KIGRDKKVTVGVDGSVYEKYPGFRERLQEALRELLG----PGDKVVLVLAEDGSGVGAAL  232

Query  464  IAAL  467
            IAA+
Sbjct  233  IAAV  236


>CDD:459774 pfam00349, Hexokinase_1, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam03727. Some members of the family have two 
copies of each of these domains.
Length=197

 Score = 311 bits (800),  Expect = 9e-106, Method: Composition-based stats.
 Identities = 106/198 (54%), Positives = 143/198 (72%), Gaps = 3/198 (2%)

Query  26   QIKDFEEMFTVDKAKLKQVVDHFVKELDKGLSVEG-GNIPMNVTWVMGFPDGDEQGTFLA  84
            ++++  + F +   KLK++VD FV+E++KGL+ EG  ++ M  T+V   P G E+GTFLA
Sbjct  1    ELEELLKQFALSDEKLKEIVDRFVEEMEKGLAKEGSSSLKMLPTYVTSLPTGTEKGTFLA  60

Query  85   LDMGGTNLRVCEITLTEEKGGFDICQSKYRMPEELKTGTAEELWEYIADCIQQFIEFHHG  144
            LD+GGTN RVC + L    G F+I Q KY++PEEL TGT EEL+++IADCI +F++ H  
Sbjct  61   LDLGGTNFRVCLVEL-GGDGKFEITQEKYKIPEELMTGTGEELFDFIADCIAEFLKEHGL  119

Query  145  EE-GLTSLPLGFTFSYPATQEYIDHGILQRWTKGFDIDGVEGQDVVPPLEETLKRKGLPI  203
            E+     LPLGFTFS+P  Q  +D G L RWTKGFDI GV G+DVV  L+E L+R+GLP+
Sbjct  120  EDFEEKELPLGFTFSFPVEQTSLDSGTLIRWTKGFDIPGVVGKDVVQLLQEALERRGLPV  179

Query  204  KVAALINDTTGTLIASAY  221
            KV AL+NDT GTL+A AY
Sbjct  180  KVVALVNDTVGTLMAGAY  197



Lambda      K        H        a         alpha
   0.318    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00011263

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  328     3e-115


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 328 bits (844),  Expect = 3e-115, Method: Composition-based stats.
 Identities = 123/244 (50%), Positives = 164/244 (67%), Gaps = 11/244 (5%)

Query  2    KIGCIFGTGVNAAYMENVGSVPKLAHMNLPPDMPVAINCEYGAFDNEHV-VLPLTKYDHI  60
            +IG I GTG NAAY+E V ++PKL    LP    + IN E+GAF +  +  LP T+YD  
Sbjct  1    RIGLILGTGTNAAYVEKVSNIPKLEG-KLPKSGEMIINTEWGAFGDNGLLPLPRTEYDKE  59

Query  61   IDRDSPRPGQQAFEKMTAGLYLGEIFRLALIDLLDSRPGLIFQNQDTSKLRKPYLLDASF  120
            +D +SP PG Q FEKM +G+YLGE+ RL L+DL +   GL+F+ Q + KL+ PY LD SF
Sbjct  60   LDAESPNPGFQPFEKMISGMYLGELVRLVLLDLAEE--GLLFKGQ-SEKLKTPYSLDTSF  116

Query  121  LAAIEEDPYENLQETQELFERELNIK-PTLAELEMIRRLAELIGTRAARLSACGVAAICK  179
            L+AIE DP E+L+ T+E+ E  L I+  T  + +++RR+ E + TRAARL A G+AAI K
Sbjct  117  LSAIESDPSEDLETTREILEELLGIETVTEEDRKIVRRICEAVSTRAARLVAAGIAAILK  176

Query  180  K-KNIESCHVGADGSVFTKYPHFKARGAQALREILDWAPNEKDKVTIMAAEDGSGVGAAL  238
            K    +   VG DGSV+ KYP F+ R  +ALRE+L       DKV ++ AEDGSGVGAAL
Sbjct  177  KIGRDKKVTVGVDGSVYEKYPGFRERLQEALRELLG----PGDKVVLVLAEDGSGVGAAL  232

Query  239  IAAL  242
            IAA+
Sbjct  233  IAAV  236



Lambda      K        H        a         alpha
   0.320    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00017614

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  332     2e-113
CDD:459774 pfam00349, Hexokinase_1, Hexokinase. Hexokinase (EC:2....  311     9e-106


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 332 bits (854),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 123/244 (50%), Positives = 164/244 (67%), Gaps = 11/244 (5%)

Query  227  KIGCIFGTGVNAAYMENVGSVPKLAHMNLPPDMPVAINCEYGAFDNEHV-VLPLTKYDHI  285
            +IG I GTG NAAY+E V ++PKL    LP    + IN E+GAF +  +  LP T+YD  
Sbjct  1    RIGLILGTGTNAAYVEKVSNIPKLEG-KLPKSGEMIINTEWGAFGDNGLLPLPRTEYDKE  59

Query  286  IDRDSPRPGQQAFEKMTAGLYLGEIFRLALIDLLDSRPGLIFQNQDTSKLRKPYLLDASF  345
            +D +SP PG Q FEKM +G+YLGE+ RL L+DL +   GL+F+ Q + KL+ PY LD SF
Sbjct  60   LDAESPNPGFQPFEKMISGMYLGELVRLVLLDLAEE--GLLFKGQ-SEKLKTPYSLDTSF  116

Query  346  LAAIEEDPYENLQETQELFERELNIK-PTLAELEMIRRLAELIGTRAARLSACGVAAICK  404
            L+AIE DP E+L+ T+E+ E  L I+  T  + +++RR+ E + TRAARL A G+AAI K
Sbjct  117  LSAIESDPSEDLETTREILEELLGIETVTEEDRKIVRRICEAVSTRAARLVAAGIAAILK  176

Query  405  K-KNIESCHVGADGSVFTKYPHFKARGAQALREILDWAPNEKDKVTIMAAEDGSGVGAAL  463
            K    +   VG DGSV+ KYP F+ R  +ALRE+L       DKV ++ AEDGSGVGAAL
Sbjct  177  KIGRDKKVTVGVDGSVYEKYPGFRERLQEALRELLG----PGDKVVLVLAEDGSGVGAAL  232

Query  464  IAAL  467
            IAA+
Sbjct  233  IAAV  236


>CDD:459774 pfam00349, Hexokinase_1, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam03727. Some members of the family have two 
copies of each of these domains.
Length=197

 Score = 311 bits (800),  Expect = 9e-106, Method: Composition-based stats.
 Identities = 106/198 (54%), Positives = 143/198 (72%), Gaps = 3/198 (2%)

Query  26   QIKDFEEMFTVDKAKLKQVVDHFVKELDKGLSVEG-GNIPMNVTWVMGFPDGDEQGTFLA  84
            ++++  + F +   KLK++VD FV+E++KGL+ EG  ++ M  T+V   P G E+GTFLA
Sbjct  1    ELEELLKQFALSDEKLKEIVDRFVEEMEKGLAKEGSSSLKMLPTYVTSLPTGTEKGTFLA  60

Query  85   LDMGGTNLRVCEITLTEEKGGFDICQSKYRMPEELKTGTAEELWEYIADCIQQFIEFHHG  144
            LD+GGTN RVC + L    G F+I Q KY++PEEL TGT EEL+++IADCI +F++ H  
Sbjct  61   LDLGGTNFRVCLVEL-GGDGKFEITQEKYKIPEELMTGTGEELFDFIADCIAEFLKEHGL  119

Query  145  EE-GLTSLPLGFTFSYPATQEYIDHGILQRWTKGFDIDGVEGQDVVPPLEETLKRKGLPI  203
            E+     LPLGFTFS+P  Q  +D G L RWTKGFDI GV G+DVV  L+E L+R+GLP+
Sbjct  120  EDFEEKELPLGFTFSFPVEQTSLDSGTLIRWTKGFDIPGVVGKDVVQLLQEALERRGLPV  179

Query  204  KVAALINDTTGTLIASAY  221
            KV AL+NDT GTL+A AY
Sbjct  180  KVVALVNDTVGTLMAGAY  197



Lambda      K        H        a         alpha
   0.318    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00017615

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  328     3e-115


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 328 bits (844),  Expect = 3e-115, Method: Composition-based stats.
 Identities = 123/244 (50%), Positives = 164/244 (67%), Gaps = 11/244 (5%)

Query  2    KIGCIFGTGVNAAYMENVGSVPKLAHMNLPPDMPVAINCEYGAFDNEHV-VLPLTKYDHI  60
            +IG I GTG NAAY+E V ++PKL    LP    + IN E+GAF +  +  LP T+YD  
Sbjct  1    RIGLILGTGTNAAYVEKVSNIPKLEG-KLPKSGEMIINTEWGAFGDNGLLPLPRTEYDKE  59

Query  61   IDRDSPRPGQQAFEKMTAGLYLGEIFRLALIDLLDSRPGLIFQNQDTSKLRKPYLLDASF  120
            +D +SP PG Q FEKM +G+YLGE+ RL L+DL +   GL+F+ Q + KL+ PY LD SF
Sbjct  60   LDAESPNPGFQPFEKMISGMYLGELVRLVLLDLAEE--GLLFKGQ-SEKLKTPYSLDTSF  116

Query  121  LAAIEEDPYENLQETQELFERELNIK-PTLAELEMIRRLAELIGTRAARLSACGVAAICK  179
            L+AIE DP E+L+ T+E+ E  L I+  T  + +++RR+ E + TRAARL A G+AAI K
Sbjct  117  LSAIESDPSEDLETTREILEELLGIETVTEEDRKIVRRICEAVSTRAARLVAAGIAAILK  176

Query  180  K-KNIESCHVGADGSVFTKYPHFKARGAQALREILDWAPNEKDKVTIMAAEDGSGVGAAL  238
            K    +   VG DGSV+ KYP F+ R  +ALRE+L       DKV ++ AEDGSGVGAAL
Sbjct  177  KIGRDKKVTVGVDGSVYEKYPGFRERLQEALRELLG----PGDKVVLVLAEDGSGVGAAL  232

Query  239  IAAL  242
            IAA+
Sbjct  233  IAAV  236



Lambda      K        H        a         alpha
   0.320    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00011267

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.120    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00011268

Length=308


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00011269

Length=308


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00011270

Length=1418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase. The JmjC do...  64.6    6e-13


>CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase.  The JmjC domain belongs 
to the Cupin superfamily. JmjC-domain proteins may be 
protein hydroxylases that catalyze a novel histone modification. 
This is confirmed to be a hydroxylase: the human JmjC 
protein named Tyw5p unexpectedly acts in the biosynthesis of 
a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe 
by catalyzing hydroxylation.
Length=114

 Score = 64.6 bits (158),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 22/116 (19%), Positives = 38/116 (33%), Gaps = 17/116 (15%)

Query  629  YCLMSVADCYTDFHID-FGGSSVYYHILKGKKTFFFIPPKDKHLKKYEDWCNSPAQDST-  686
            +  + +    T +HI+  G  S+ Y      K ++ IPP+     K+E   +        
Sbjct  1    WLYLGMPFSTTPWHIEDQGLYSINYLHFGAPKVWYIIPPEYAE--KFEKVLSDHFGGEQP  58

Query  687  -FLGDQTK------------ECYRVDLSEGDTMLIPSGWIHAVWTPTNSLVIGGNF  729
              L                   YR     G+ +    GW H V+    ++    NF
Sbjct  59   DDLLHLNTIISPKQLRENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF  114



Lambda      K        H        a         alpha
   0.313    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1817112000


Query= TCONS_00011271

Length=1134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase. The JmjC do...  64.6    5e-13


>CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase.  The JmjC domain belongs 
to the Cupin superfamily. JmjC-domain proteins may be 
protein hydroxylases that catalyze a novel histone modification. 
This is confirmed to be a hydroxylase: the human JmjC 
protein named Tyw5p unexpectedly acts in the biosynthesis of 
a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe 
by catalyzing hydroxylation.
Length=114

 Score = 64.6 bits (158),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 22/116 (19%), Positives = 38/116 (33%), Gaps = 17/116 (15%)

Query  629  YCLMSVADCYTDFHID-FGGSSVYYHILKGKKTFFFIPPKDKHLKKYEDWCNSPAQDST-  686
            +  + +    T +HI+  G  S+ Y      K ++ IPP+     K+E   +        
Sbjct  1    WLYLGMPFSTTPWHIEDQGLYSINYLHFGAPKVWYIIPPEYAE--KFEKVLSDHFGGEQP  58

Query  687  -FLGDQTK------------ECYRVDLSEGDTMLIPSGWIHAVWTPTNSLVIGGNF  729
              L                   YR     G+ +    GW H V+    ++    NF
Sbjct  59   DDLLHLNTIISPKQLRENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF  114



Lambda      K        H        a         alpha
   0.315    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1447898806


Query= TCONS_00011272

Length=1418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase. The JmjC do...  64.6    6e-13


>CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase.  The JmjC domain belongs 
to the Cupin superfamily. JmjC-domain proteins may be 
protein hydroxylases that catalyze a novel histone modification. 
This is confirmed to be a hydroxylase: the human JmjC 
protein named Tyw5p unexpectedly acts in the biosynthesis of 
a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe 
by catalyzing hydroxylation.
Length=114

 Score = 64.6 bits (158),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 22/116 (19%), Positives = 38/116 (33%), Gaps = 17/116 (15%)

Query  629  YCLMSVADCYTDFHID-FGGSSVYYHILKGKKTFFFIPPKDKHLKKYEDWCNSPAQDST-  686
            +  + +    T +HI+  G  S+ Y      K ++ IPP+     K+E   +        
Sbjct  1    WLYLGMPFSTTPWHIEDQGLYSINYLHFGAPKVWYIIPPEYAE--KFEKVLSDHFGGEQP  58

Query  687  -FLGDQTK------------ECYRVDLSEGDTMLIPSGWIHAVWTPTNSLVIGGNF  729
              L                   YR     G+ +    GW H V+    ++    NF
Sbjct  59   DDLLHLNTIISPKQLRENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF  114



Lambda      K        H        a         alpha
   0.313    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0827    0.140     1.90     42.6     43.6 

Effective search space used: 1817112000


Query= TCONS_00017616

Length=1418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase. The JmjC do...  64.6    6e-13


>CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase.  The JmjC domain belongs 
to the Cupin superfamily. JmjC-domain proteins may be 
protein hydroxylases that catalyze a novel histone modification. 
This is confirmed to be a hydroxylase: the human JmjC 
protein named Tyw5p unexpectedly acts in the biosynthesis of 
a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe 
by catalyzing hydroxylation.
Length=114

 Score = 64.6 bits (158),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 22/116 (19%), Positives = 38/116 (33%), Gaps = 17/116 (15%)

Query  629  YCLMSVADCYTDFHID-FGGSSVYYHILKGKKTFFFIPPKDKHLKKYEDWCNSPAQDST-  686
            +  + +    T +HI+  G  S+ Y      K ++ IPP+     K+E   +        
Sbjct  1    WLYLGMPFSTTPWHIEDQGLYSINYLHFGAPKVWYIIPPEYAE--KFEKVLSDHFGGEQP  58

Query  687  -FLGDQTK------------ECYRVDLSEGDTMLIPSGWIHAVWTPTNSLVIGGNF  729
              L                   YR     G+ +    GW H V+    ++    NF
Sbjct  59   DDLLHLNTIISPKQLRENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF  114



Lambda      K        H        a         alpha
   0.313    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1817112000


Query= TCONS_00011273

Length=1418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase. The JmjC do...  64.6    6e-13


>CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase.  The JmjC domain belongs 
to the Cupin superfamily. JmjC-domain proteins may be 
protein hydroxylases that catalyze a novel histone modification. 
This is confirmed to be a hydroxylase: the human JmjC 
protein named Tyw5p unexpectedly acts in the biosynthesis of 
a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe 
by catalyzing hydroxylation.
Length=114

 Score = 64.6 bits (158),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 22/116 (19%), Positives = 38/116 (33%), Gaps = 17/116 (15%)

Query  629  YCLMSVADCYTDFHID-FGGSSVYYHILKGKKTFFFIPPKDKHLKKYEDWCNSPAQDST-  686
            +  + +    T +HI+  G  S+ Y      K ++ IPP+     K+E   +        
Sbjct  1    WLYLGMPFSTTPWHIEDQGLYSINYLHFGAPKVWYIIPPEYAE--KFEKVLSDHFGGEQP  58

Query  687  -FLGDQTK------------ECYRVDLSEGDTMLIPSGWIHAVWTPTNSLVIGGNF  729
              L                   YR     G+ +    GW H V+    ++    NF
Sbjct  59   DDLLHLNTIISPKQLRENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF  114



Lambda      K        H        a         alpha
   0.313    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1817112000


Query= TCONS_00017617

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463085 pfam10419, TFIIIC_sub6, TFIIIC subunit. This is a fami...  75.3    2e-18


>CDD:463085 pfam10419, TFIIIC_sub6, TFIIIC subunit.  This is a family of 
proteins subunits of TFIIIC. TFIIIC in yeast and humans is required 
for transcription of tRNA and 5 S RNA genes by RNA polymerase 
III. Yeast members of this family are fused to phosphoglycerate 
mutase domain.
Length=91

 Score = 75.3 bits (186),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 49/138 (36%), Gaps = 48/138 (35%)

Query  33   DTETFYLNLDLTSLHGPIRPPRRRDPASSTAAASTTLTPTDDHEPAMDSTEPDNVLSERV  92
            +TET Y+ LDL+                                    S    +     +
Sbjct  2    ETETVYVTLDLSGPL--------------------------------YSERLPDEEDATI  29

Query  93   QILGLHTTNPIVSYQNQIFSCTWADQIGTELLFTRPETGHEPDIESALPQISPLRSGKDF  152
            QILGL T NP++    Q++   W + IGTELLF   +  ++                K  
Sbjct  30   QILGLDTENPLLQIGGQVYEGEWEETIGTELLFEEDDDANK----------------KSL  73

Query  153  DLIAANSVKILGRKANLI  170
            +L+  +S +++  +  L 
Sbjct  74   ELLGKSSKRLVLTRVFLK  91



Lambda      K        H        a         alpha
   0.312    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00011274

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463085 pfam10419, TFIIIC_sub6, TFIIIC subunit. This is a fami...  76.1    3e-18


>CDD:463085 pfam10419, TFIIIC_sub6, TFIIIC subunit.  This is a family of 
proteins subunits of TFIIIC. TFIIIC in yeast and humans is required 
for transcription of tRNA and 5 S RNA genes by RNA polymerase 
III. Yeast members of this family are fused to phosphoglycerate 
mutase domain.
Length=91

 Score = 76.1 bits (188),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 48/138 (35%), Gaps = 48/138 (35%)

Query  33   DTETFYLNLDLTSLHGPIRPPRRRDPASSTAAASTTLTPTDDHEPAMDSTEPDNVLSERV  92
            +TET Y+ LDL+                                    S    +     +
Sbjct  2    ETETVYVTLDLSGPL--------------------------------YSERLPDEEDATI  29

Query  93   QILGLHTTNPIVSYQNQIFSCTWADQIGTELLFTRPETGHEPDIESALPQISPLRSGKDF  152
            QILGL T NP++    Q++   W + IGTELLF   +  +                 K  
Sbjct  30   QILGLDTENPLLQIGGQVYEGEWEETIGTELLFEEDDDAN----------------KKSL  73

Query  153  DLIAANSVKILGRKANLI  170
            +L+  +S +++  +  L 
Sbjct  74   ELLGKSSKRLVLTRVFLK  91



Lambda      K        H        a         alpha
   0.311    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00011275

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463085 pfam10419, TFIIIC_sub6, TFIIIC subunit. This is a fami...  76.1    3e-18


>CDD:463085 pfam10419, TFIIIC_sub6, TFIIIC subunit.  This is a family of 
proteins subunits of TFIIIC. TFIIIC in yeast and humans is required 
for transcription of tRNA and 5 S RNA genes by RNA polymerase 
III. Yeast members of this family are fused to phosphoglycerate 
mutase domain.
Length=91

 Score = 76.1 bits (188),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 48/138 (35%), Gaps = 48/138 (35%)

Query  33   DTETFYLNLDLTSLHGPIRPPRRRDPASSTAAASTTLTPTDDHEPAMDSTEPDNVLSERV  92
            +TET Y+ LDL+                                    S    +     +
Sbjct  2    ETETVYVTLDLSGPL--------------------------------YSERLPDEEDATI  29

Query  93   QILGLHTTNPIVSYQNQIFSCTWADQIGTELLFTRPETGHEPDIESALPQISPLRSGKDF  152
            QILGL T NP++    Q++   W + IGTELLF   +  +                 K  
Sbjct  30   QILGLDTENPLLQIGGQVYEGEWEETIGTELLFEEDDDAN----------------KKSL  73

Query  153  DLIAANSVKILGRKANLI  170
            +L+  +S +++  +  L 
Sbjct  74   ELLGKSSKRLVLTRVFLK  91



Lambda      K        H        a         alpha
   0.311    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00017618

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463085 pfam10419, TFIIIC_sub6, TFIIIC subunit. This is a fami...  75.3    3e-19


>CDD:463085 pfam10419, TFIIIC_sub6, TFIIIC subunit.  This is a family of 
proteins subunits of TFIIIC. TFIIIC in yeast and humans is required 
for transcription of tRNA and 5 S RNA genes by RNA polymerase 
III. Yeast members of this family are fused to phosphoglycerate 
mutase domain.
Length=91

 Score = 75.3 bits (186),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (42%), Gaps = 16/91 (18%)

Query  2   DSTEPDNVLSERVQILGLHTTNPIVSYQNQIFSCTWADQIGTELLFTRPETGHEPDIESA  61
            S    +     +QILGL T NP++    Q++   W + IGTELLF   +  +       
Sbjct  17  YSERLPDEEDATIQILGLDTENPLLQIGGQVYEGEWEETIGTELLFEEDDDAN-------  69

Query  62  LPQISPLRSGKDFDLIAANSVKILGRKANLI  92
                     K  +L+  +S +++  +  L 
Sbjct  70  ---------KKSLELLGKSSKRLVLTRVFLK  91



Lambda      K        H        a         alpha
   0.313    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00017619

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463085 pfam10419, TFIIIC_sub6, TFIIIC subunit. This is a fami...  76.1    3e-18


>CDD:463085 pfam10419, TFIIIC_sub6, TFIIIC subunit.  This is a family of 
proteins subunits of TFIIIC. TFIIIC in yeast and humans is required 
for transcription of tRNA and 5 S RNA genes by RNA polymerase 
III. Yeast members of this family are fused to phosphoglycerate 
mutase domain.
Length=91

 Score = 76.1 bits (188),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 48/138 (35%), Gaps = 48/138 (35%)

Query  33   DTETFYLNLDLTSLHGPIRPPRRRDPASSTAAASTTLTPTDDHEPAMDSTEPDNVLSERV  92
            +TET Y+ LDL+                                    S    +     +
Sbjct  2    ETETVYVTLDLSGPL--------------------------------YSERLPDEEDATI  29

Query  93   QILGLHTTNPIVSYQNQIFSCTWADQIGTELLFTRPETGHEPDIESALPQISPLRSGKDF  152
            QILGL T NP++    Q++   W + IGTELLF   +  +                 K  
Sbjct  30   QILGLDTENPLLQIGGQVYEGEWEETIGTELLFEEDDDAN----------------KKSL  73

Query  153  DLIAANSVKILGRKANLI  170
            +L+  +S +++  +  L 
Sbjct  74   ELLGKSSKRLVLTRVFLK  91



Lambda      K        H        a         alpha
   0.311    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00017620

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463085 pfam10419, TFIIIC_sub6, TFIIIC subunit. This is a fami...  74.9    2e-18


>CDD:463085 pfam10419, TFIIIC_sub6, TFIIIC subunit.  This is a family of 
proteins subunits of TFIIIC. TFIIIC in yeast and humans is required 
for transcription of tRNA and 5 S RNA genes by RNA polymerase 
III. Yeast members of this family are fused to phosphoglycerate 
mutase domain.
Length=91

 Score = 74.9 bits (185),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (42%), Gaps = 16/91 (18%)

Query  2   DSTEPDNVLSERVQILGLHTTNPIVSYQNQIFSCTWADQIGTELLFTRPETGHEPDIESA  61
            S    +     +QILGL T NP++    Q++   W + IGTELLF   +  +       
Sbjct  17  YSERLPDEEDATIQILGLDTENPLLQIGGQVYEGEWEETIGTELLFEEDDDAN-------  69

Query  62  LPQISPLRSGKDFDLIAANSVKILGRKANLI  92
                     K  +L+  +S +++  +  L 
Sbjct  70  ---------KKSLELLGKSSKRLVLTRVFLK  91



Lambda      K        H        a         alpha
   0.312    0.129    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00017621

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.145    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00011277

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.144    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00017622

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00017623

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.142    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00011279

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00017625

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00011281

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00011280

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00011283

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalan...  216     1e-64


>CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine 
dehydrogenase.  
Length=240

 Score = 216 bits (554),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 109/272 (40%), Gaps = 38/272 (14%)

Query  726  GGIPHDTYGMTTLSVRQYVLGIYRKLGIDPSNIRKLQTGGPDGDLGSNEILLA---NEKY  782
            GG        T   V  +V  + +KLG D    +++   G  G++GS   L       K 
Sbjct  1    GGS-LGRPEATGYGVVYFVEEMLKKLGGDSLEGKRVAIQGF-GNVGSYAALKLHELGAKV  58

Query  783  TAIVDGSGVIVDPHGLDHQELIRLAKKRVTISEFDLSKLSPEGYRVLVDESDVKLPSGEV  842
             A+ D SG I DP GLD +EL+ L ++R ++ E+ LS                 +P+ E+
Sbjct  59   VAVSDSSGAIYDPDGLDIEELLELKEERGSVDEYALSG------------GAEYIPNEEL  106

Query  843  VRNGMLFRNTFHLRSDQHYDIFVPCGGRPESIDLSTVGKLIQNGKSVIPYIVEGANLFIT  902
                           +   DI VPC      I       LI+NG      +VEGAN+  T
Sbjct  107  W--------------ELPCDILVPCA-TQNEITEENAKTLIKNG---AKIVVEGANMPTT  148

Query  903  QDSKLRLERAGCILFKDASANKGGVTSSSLEVLASLS---FDDKEFAENMCIREDGTVPQ  959
             ++   LE  G ++  D +AN GGVT S LE++ +L    + ++E  E +          
Sbjct  149  PEADDILEERGVLVVPDKAANAGGVTVSYLEMVQNLQRLSWTEEEVDEKLKEIMTNAFDA  208

Query  960  FYSDYVKQVQEIIKSNATLEFEAIWREHEQTG  991
                  +   ++        FE +    +  G
Sbjct  209  VVETAQEYGVDLRTGANIAGFERVADAMKARG  240



Lambda      K        H        a         alpha
   0.318    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390653048


Query= TCONS_00011282

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalan...  216     1e-64


>CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine 
dehydrogenase.  
Length=240

 Score = 216 bits (554),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 109/272 (40%), Gaps = 38/272 (14%)

Query  726  GGIPHDTYGMTTLSVRQYVLGIYRKLGIDPSNIRKLQTGGPDGDLGSNEILLA---NEKY  782
            GG        T   V  +V  + +KLG D    +++   G  G++GS   L       K 
Sbjct  1    GGS-LGRPEATGYGVVYFVEEMLKKLGGDSLEGKRVAIQGF-GNVGSYAALKLHELGAKV  58

Query  783  TAIVDGSGVIVDPHGLDHQELIRLAKKRVTISEFDLSKLSPEGYRVLVDESDVKLPSGEV  842
             A+ D SG I DP GLD +EL+ L ++R ++ E+ LS                 +P+ E+
Sbjct  59   VAVSDSSGAIYDPDGLDIEELLELKEERGSVDEYALSG------------GAEYIPNEEL  106

Query  843  VRNGMLFRNTFHLRSDQHYDIFVPCGGRPESIDLSTVGKLIQNGKSVIPYIVEGANLFIT  902
                           +   DI VPC      I       LI+NG      +VEGAN+  T
Sbjct  107  W--------------ELPCDILVPCA-TQNEITEENAKTLIKNG---AKIVVEGANMPTT  148

Query  903  QDSKLRLERAGCILFKDASANKGGVTSSSLEVLASLS---FDDKEFAENMCIREDGTVPQ  959
             ++   LE  G ++  D +AN GGVT S LE++ +L    + ++E  E +          
Sbjct  149  PEADDILEERGVLVVPDKAANAGGVTVSYLEMVQNLQRLSWTEEEVDEKLKEIMTNAFDA  208

Query  960  FYSDYVKQVQEIIKSNATLEFEAIWREHEQTG  991
                  +   ++        FE +    +  G
Sbjct  209  VVETAQEYGVDLRTGANIAGFERVADAMKARG  240



Lambda      K        H        a         alpha
   0.318    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390653048


Query= TCONS_00017627

Length=988
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalan...  216     7e-65


>CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine 
dehydrogenase.  
Length=240

 Score = 216 bits (554),  Expect = 7e-65, Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 109/272 (40%), Gaps = 38/272 (14%)

Query  621  GGIPHDTYGMTTLSVRQYVLGIYRKLGIDPSNIRKLQTGGPDGDLGSNEILLA---NEKY  677
            GG        T   V  +V  + +KLG D    +++   G  G++GS   L       K 
Sbjct  1    GGS-LGRPEATGYGVVYFVEEMLKKLGGDSLEGKRVAIQGF-GNVGSYAALKLHELGAKV  58

Query  678  TAIVDGSGVIVDPHGLDHQELIRLAKKRVTISEFDLSKLSPEGYRVLVDESDVKLPSGEV  737
             A+ D SG I DP GLD +EL+ L ++R ++ E+ LS                 +P+ E+
Sbjct  59   VAVSDSSGAIYDPDGLDIEELLELKEERGSVDEYALSG------------GAEYIPNEEL  106

Query  738  VRNGMLFRNTFHLRSDQHYDIFVPCGGRPESIDLSTVGKLIQNGKSVIPYIVEGANLFIT  797
                           +   DI VPC      I       LI+NG      +VEGAN+  T
Sbjct  107  W--------------ELPCDILVPCA-TQNEITEENAKTLIKNG---AKIVVEGANMPTT  148

Query  798  QDSKLRLERAGCILFKDASANKGGVTSSSLEVLASLS---FDDKEFAENMCIREDGTVPQ  854
             ++   LE  G ++  D +AN GGVT S LE++ +L    + ++E  E +          
Sbjct  149  PEADDILEERGVLVVPDKAANAGGVTVSYLEMVQNLQRLSWTEEEVDEKLKEIMTNAFDA  208

Query  855  FYSDYVKQVQEIIKSNATLEFEAIWREHEQTG  886
                  +   ++        FE +    +  G
Sbjct  209  VVETAQEYGVDLRTGANIAGFERVADAMKARG  240



Lambda      K        H        a         alpha
   0.319    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1262961392


Query= TCONS_00017626

Length=988
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalan...  216     7e-65


>CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine 
dehydrogenase.  
Length=240

 Score = 216 bits (554),  Expect = 7e-65, Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 109/272 (40%), Gaps = 38/272 (14%)

Query  621  GGIPHDTYGMTTLSVRQYVLGIYRKLGIDPSNIRKLQTGGPDGDLGSNEILLA---NEKY  677
            GG        T   V  +V  + +KLG D    +++   G  G++GS   L       K 
Sbjct  1    GGS-LGRPEATGYGVVYFVEEMLKKLGGDSLEGKRVAIQGF-GNVGSYAALKLHELGAKV  58

Query  678  TAIVDGSGVIVDPHGLDHQELIRLAKKRVTISEFDLSKLSPEGYRVLVDESDVKLPSGEV  737
             A+ D SG I DP GLD +EL+ L ++R ++ E+ LS                 +P+ E+
Sbjct  59   VAVSDSSGAIYDPDGLDIEELLELKEERGSVDEYALSG------------GAEYIPNEEL  106

Query  738  VRNGMLFRNTFHLRSDQHYDIFVPCGGRPESIDLSTVGKLIQNGKSVIPYIVEGANLFIT  797
                           +   DI VPC      I       LI+NG      +VEGAN+  T
Sbjct  107  W--------------ELPCDILVPCA-TQNEITEENAKTLIKNG---AKIVVEGANMPTT  148

Query  798  QDSKLRLERAGCILFKDASANKGGVTSSSLEVLASLS---FDDKEFAENMCIREDGTVPQ  854
             ++   LE  G ++  D +AN GGVT S LE++ +L    + ++E  E +          
Sbjct  149  PEADDILEERGVLVVPDKAANAGGVTVSYLEMVQNLQRLSWTEEEVDEKLKEIMTNAFDA  208

Query  855  FYSDYVKQVQEIIKSNATLEFEAIWREHEQTG  886
                  +   ++        FE +    +  G
Sbjct  209  VVETAQEYGVDLRTGANIAGFERVADAMKARG  240



Lambda      K        H        a         alpha
   0.319    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1262961392


Query= TCONS_00017628

Length=988
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalan...  216     7e-65


>CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine 
dehydrogenase.  
Length=240

 Score = 216 bits (554),  Expect = 7e-65, Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 109/272 (40%), Gaps = 38/272 (14%)

Query  621  GGIPHDTYGMTTLSVRQYVLGIYRKLGIDPSNIRKLQTGGPDGDLGSNEILLA---NEKY  677
            GG        T   V  +V  + +KLG D    +++   G  G++GS   L       K 
Sbjct  1    GGS-LGRPEATGYGVVYFVEEMLKKLGGDSLEGKRVAIQGF-GNVGSYAALKLHELGAKV  58

Query  678  TAIVDGSGVIVDPHGLDHQELIRLAKKRVTISEFDLSKLSPEGYRVLVDESDVKLPSGEV  737
             A+ D SG I DP GLD +EL+ L ++R ++ E+ LS                 +P+ E+
Sbjct  59   VAVSDSSGAIYDPDGLDIEELLELKEERGSVDEYALSG------------GAEYIPNEEL  106

Query  738  VRNGMLFRNTFHLRSDQHYDIFVPCGGRPESIDLSTVGKLIQNGKSVIPYIVEGANLFIT  797
                           +   DI VPC      I       LI+NG      +VEGAN+  T
Sbjct  107  W--------------ELPCDILVPCA-TQNEITEENAKTLIKNG---AKIVVEGANMPTT  148

Query  798  QDSKLRLERAGCILFKDASANKGGVTSSSLEVLASLS---FDDKEFAENMCIREDGTVPQ  854
             ++   LE  G ++  D +AN GGVT S LE++ +L    + ++E  E +          
Sbjct  149  PEADDILEERGVLVVPDKAANAGGVTVSYLEMVQNLQRLSWTEEEVDEKLKEIMTNAFDA  208

Query  855  FYSDYVKQVQEIIKSNATLEFEAIWREHEQTG  886
                  +   ++        FE +    +  G
Sbjct  209  VVETAQEYGVDLRTGANIAGFERVADAMKARG  240



Lambda      K        H        a         alpha
   0.319    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0827    0.140     1.90     42.6     43.6 

Effective search space used: 1262961392


Query= TCONS_00011284

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalan...  216     1e-64


>CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine 
dehydrogenase.  
Length=240

 Score = 216 bits (554),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 109/272 (40%), Gaps = 38/272 (14%)

Query  726  GGIPHDTYGMTTLSVRQYVLGIYRKLGIDPSNIRKLQTGGPDGDLGSNEILLA---NEKY  782
            GG        T   V  +V  + +KLG D    +++   G  G++GS   L       K 
Sbjct  1    GGS-LGRPEATGYGVVYFVEEMLKKLGGDSLEGKRVAIQGF-GNVGSYAALKLHELGAKV  58

Query  783  TAIVDGSGVIVDPHGLDHQELIRLAKKRVTISEFDLSKLSPEGYRVLVDESDVKLPSGEV  842
             A+ D SG I DP GLD +EL+ L ++R ++ E+ LS                 +P+ E+
Sbjct  59   VAVSDSSGAIYDPDGLDIEELLELKEERGSVDEYALSG------------GAEYIPNEEL  106

Query  843  VRNGMLFRNTFHLRSDQHYDIFVPCGGRPESIDLSTVGKLIQNGKSVIPYIVEGANLFIT  902
                           +   DI VPC      I       LI+NG      +VEGAN+  T
Sbjct  107  W--------------ELPCDILVPCA-TQNEITEENAKTLIKNG---AKIVVEGANMPTT  148

Query  903  QDSKLRLERAGCILFKDASANKGGVTSSSLEVLASLS---FDDKEFAENMCIREDGTVPQ  959
             ++   LE  G ++  D +AN GGVT S LE++ +L    + ++E  E +          
Sbjct  149  PEADDILEERGVLVVPDKAANAGGVTVSYLEMVQNLQRLSWTEEEVDEKLKEIMTNAFDA  208

Query  960  FYSDYVKQVQEIIKSNATLEFEAIWREHEQTG  991
                  +   ++        FE +    +  G
Sbjct  209  VVETAQEYGVDLRTGANIAGFERVADAMKARG  240



Lambda      K        H        a         alpha
   0.318    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390653048


Query= TCONS_00011286

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalan...  216     1e-64


>CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine 
dehydrogenase.  
Length=240

 Score = 216 bits (554),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 109/272 (40%), Gaps = 38/272 (14%)

Query  726  GGIPHDTYGMTTLSVRQYVLGIYRKLGIDPSNIRKLQTGGPDGDLGSNEILLA---NEKY  782
            GG        T   V  +V  + +KLG D    +++   G  G++GS   L       K 
Sbjct  1    GGS-LGRPEATGYGVVYFVEEMLKKLGGDSLEGKRVAIQGF-GNVGSYAALKLHELGAKV  58

Query  783  TAIVDGSGVIVDPHGLDHQELIRLAKKRVTISEFDLSKLSPEGYRVLVDESDVKLPSGEV  842
             A+ D SG I DP GLD +EL+ L ++R ++ E+ LS                 +P+ E+
Sbjct  59   VAVSDSSGAIYDPDGLDIEELLELKEERGSVDEYALSG------------GAEYIPNEEL  106

Query  843  VRNGMLFRNTFHLRSDQHYDIFVPCGGRPESIDLSTVGKLIQNGKSVIPYIVEGANLFIT  902
                           +   DI VPC      I       LI+NG      +VEGAN+  T
Sbjct  107  W--------------ELPCDILVPCA-TQNEITEENAKTLIKNG---AKIVVEGANMPTT  148

Query  903  QDSKLRLERAGCILFKDASANKGGVTSSSLEVLASLS---FDDKEFAENMCIREDGTVPQ  959
             ++   LE  G ++  D +AN GGVT S LE++ +L    + ++E  E +          
Sbjct  149  PEADDILEERGVLVVPDKAANAGGVTVSYLEMVQNLQRLSWTEEEVDEKLKEIMTNAFDA  208

Query  960  FYSDYVKQVQEIIKSNATLEFEAIWREHEQTG  991
                  +   ++        FE +    +  G
Sbjct  209  VVETAQEYGVDLRTGANIAGFERVADAMKARG  240



Lambda      K        H        a         alpha
   0.318    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390653048


Query= TCONS_00011285

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalan...  216     1e-64


>CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine 
dehydrogenase.  
Length=240

 Score = 216 bits (554),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 109/272 (40%), Gaps = 38/272 (14%)

Query  726  GGIPHDTYGMTTLSVRQYVLGIYRKLGIDPSNIRKLQTGGPDGDLGSNEILLA---NEKY  782
            GG        T   V  +V  + +KLG D    +++   G  G++GS   L       K 
Sbjct  1    GGS-LGRPEATGYGVVYFVEEMLKKLGGDSLEGKRVAIQGF-GNVGSYAALKLHELGAKV  58

Query  783  TAIVDGSGVIVDPHGLDHQELIRLAKKRVTISEFDLSKLSPEGYRVLVDESDVKLPSGEV  842
             A+ D SG I DP GLD +EL+ L ++R ++ E+ LS                 +P+ E+
Sbjct  59   VAVSDSSGAIYDPDGLDIEELLELKEERGSVDEYALSG------------GAEYIPNEEL  106

Query  843  VRNGMLFRNTFHLRSDQHYDIFVPCGGRPESIDLSTVGKLIQNGKSVIPYIVEGANLFIT  902
                           +   DI VPC      I       LI+NG      +VEGAN+  T
Sbjct  107  W--------------ELPCDILVPCA-TQNEITEENAKTLIKNG---AKIVVEGANMPTT  148

Query  903  QDSKLRLERAGCILFKDASANKGGVTSSSLEVLASLS---FDDKEFAENMCIREDGTVPQ  959
             ++   LE  G ++  D +AN GGVT S LE++ +L    + ++E  E +          
Sbjct  149  PEADDILEERGVLVVPDKAANAGGVTVSYLEMVQNLQRLSWTEEEVDEKLKEIMTNAFDA  208

Query  960  FYSDYVKQVQEIIKSNATLEFEAIWREHEQTG  991
                  +   ++        FE +    +  G
Sbjct  209  VVETAQEYGVDLRTGANIAGFERVADAMKARG  240



Lambda      K        H        a         alpha
   0.318    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390653048


Query= TCONS_00011287

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalan...  216     1e-64


>CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine 
dehydrogenase.  
Length=240

 Score = 216 bits (554),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 109/272 (40%), Gaps = 38/272 (14%)

Query  726  GGIPHDTYGMTTLSVRQYVLGIYRKLGIDPSNIRKLQTGGPDGDLGSNEILLA---NEKY  782
            GG        T   V  +V  + +KLG D    +++   G  G++GS   L       K 
Sbjct  1    GGS-LGRPEATGYGVVYFVEEMLKKLGGDSLEGKRVAIQGF-GNVGSYAALKLHELGAKV  58

Query  783  TAIVDGSGVIVDPHGLDHQELIRLAKKRVTISEFDLSKLSPEGYRVLVDESDVKLPSGEV  842
             A+ D SG I DP GLD +EL+ L ++R ++ E+ LS                 +P+ E+
Sbjct  59   VAVSDSSGAIYDPDGLDIEELLELKEERGSVDEYALSG------------GAEYIPNEEL  106

Query  843  VRNGMLFRNTFHLRSDQHYDIFVPCGGRPESIDLSTVGKLIQNGKSVIPYIVEGANLFIT  902
                           +   DI VPC      I       LI+NG      +VEGAN+  T
Sbjct  107  W--------------ELPCDILVPCA-TQNEITEENAKTLIKNG---AKIVVEGANMPTT  148

Query  903  QDSKLRLERAGCILFKDASANKGGVTSSSLEVLASLS---FDDKEFAENMCIREDGTVPQ  959
             ++   LE  G ++  D +AN GGVT S LE++ +L    + ++E  E +          
Sbjct  149  PEADDILEERGVLVVPDKAANAGGVTVSYLEMVQNLQRLSWTEEEVDEKLKEIMTNAFDA  208

Query  960  FYSDYVKQVQEIIKSNATLEFEAIWREHEQTG  991
                  +   ++        FE +    +  G
Sbjct  209  VVETAQEYGVDLRTGANIAGFERVADAMKARG  240



Lambda      K        H        a         alpha
   0.318    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390653048


Query= TCONS_00011288

Length=1082
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalan...  216     1e-64


>CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine 
dehydrogenase.  
Length=240

 Score = 216 bits (554),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 109/272 (40%), Gaps = 38/272 (14%)

Query  726  GGIPHDTYGMTTLSVRQYVLGIYRKLGIDPSNIRKLQTGGPDGDLGSNEILLA---NEKY  782
            GG        T   V  +V  + +KLG D    +++   G  G++GS   L       K 
Sbjct  1    GGS-LGRPEATGYGVVYFVEEMLKKLGGDSLEGKRVAIQGF-GNVGSYAALKLHELGAKV  58

Query  783  TAIVDGSGVIVDPHGLDHQELIRLAKKRVTISEFDLSKLSPEGYRVLVDESDVKLPSGEV  842
             A+ D SG I DP GLD +EL+ L ++R ++ E+ LS                 +P+ E+
Sbjct  59   VAVSDSSGAIYDPDGLDIEELLELKEERGSVDEYALSG------------GAEYIPNEEL  106

Query  843  VRNGMLFRNTFHLRSDQHYDIFVPCGGRPESIDLSTVGKLIQNGKSVIPYIVEGANLFIT  902
                           +   DI VPC      I       LI+NG      +VEGAN+  T
Sbjct  107  W--------------ELPCDILVPCA-TQNEITEENAKTLIKNG---AKIVVEGANMPTT  148

Query  903  QDSKLRLERAGCILFKDASANKGGVTSSSLEVLASLS---FDDKEFAENMCIREDGTVPQ  959
             ++   LE  G ++  D +AN GGVT S LE++ +L    + ++E  E +          
Sbjct  149  PEADDILEERGVLVVPDKAANAGGVTVSYLEMVQNLQRLSWTEEEVDEKLKEIMTNAFDA  208

Query  960  FYSDYVKQVQEIIKSNATLEFEAIWREHEQTG  991
                  +   ++        FE +    +  G
Sbjct  209  VVETAQEYGVDLRTGANIAGFERVADAMKARG  240



Lambda      K        H        a         alpha
   0.318    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1375294430


Query= TCONS_00011290

Length=821


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1042183164


Query= TCONS_00011289

Length=821


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1042183164


Query= TCONS_00011291

Length=821


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1042183164


Query= TCONS_00017630

Length=821


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1042183164


Query= TCONS_00011292

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00017631

Length=821


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1042183164


Query= TCONS_00011293

Length=821


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0769    0.140     1.90     42.6     43.6 

Effective search space used: 1042183164


Query= TCONS_00011294

Length=493


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00017632

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00011295

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00017633

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00017634

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00011296

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00011297

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00011299

Length=612


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 777102560


Query= TCONS_00011300

Length=577


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 724797580


Query= TCONS_00011302

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463692 pfam12767, SAGA-Tad1, Transcriptional regulator of RNA...  146     2e-43


>CDD:463692 pfam12767, SAGA-Tad1, Transcriptional regulator of RNA polII, 
SAGA, subunit.  The yeast SAGA complex is a multifunctional 
coactivator that regulates transcription by RNA polymerase 
II. It is formed of five major modular subunits and shows a 
high degree of structural conservation to human TFTC and STAGA. 
The complex can also be conceived of as consisting of two 
histone-fold-containing core subunits, and this family is 
one of these. As a family it is likely to carry binding regions 
for interactions with a number of the other components of 
the complex.
Length=135

 Score = 146 bits (371),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 76/231 (33%), Gaps = 97/231 (42%)

Query  43   RLDLEPIYTELKAAIG-ENWAEYKESTTLFLLGHLNQNELASRVDHIICADQKTEHLHNN  101
            R+DLE + T+LK  +G E W +Y E+ + FL G L++ EL    D I+  +    HLHN 
Sbjct  1    RIDLEELKTQLKKKLGPERWEKYFEALSRFLSGKLSKAELDKLCDPILGRE--NLHLHNQ  58

Query  102  FICAIIGNLTRDLPDHGVASWVSANDKPSIVSKPSSGDAAEARLKTEVMQLPPRDRRRIK  161
             I +I+ N                                                    
Sbjct  59   LILSILANA---------------------------------------------------  67

Query  162  AIPERDPHEVVPNEVEEYHLAKQIKLPSQVPASAGGLNKTNWELEIRKRYAQPLASETGE  221
                                                        EIR  YA PLA E+GE
Sbjct  68   -------------------------------------------QEIRSPYAAPLAYESGE  84

Query  222  FPDAESIHARMIPICYEESVVSGAGFPCAEFMAIATETFVKEVLSVVFSRT  272
             PD +S+  RM PI YE  +V G    CA  +  A + ++K +L       
Sbjct  85   LPDTDSLRKRMEPIAYEHGLVGGVSADCANLLNNALDVYLKNLLESCIDLV  135



Lambda      K        H        a         alpha
   0.314    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00011304

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463692 pfam12767, SAGA-Tad1, Transcriptional regulator of RNA...  146     2e-43


>CDD:463692 pfam12767, SAGA-Tad1, Transcriptional regulator of RNA polII, 
SAGA, subunit.  The yeast SAGA complex is a multifunctional 
coactivator that regulates transcription by RNA polymerase 
II. It is formed of five major modular subunits and shows a 
high degree of structural conservation to human TFTC and STAGA. 
The complex can also be conceived of as consisting of two 
histone-fold-containing core subunits, and this family is 
one of these. As a family it is likely to carry binding regions 
for interactions with a number of the other components of 
the complex.
Length=135

 Score = 146 bits (371),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 76/231 (33%), Gaps = 97/231 (42%)

Query  43   RLDLEPIYTELKAAIG-ENWAEYKESTTLFLLGHLNQNELASRVDHIICADQKTEHLHNN  101
            R+DLE + T+LK  +G E W +Y E+ + FL G L++ EL    D I+  +    HLHN 
Sbjct  1    RIDLEELKTQLKKKLGPERWEKYFEALSRFLSGKLSKAELDKLCDPILGRE--NLHLHNQ  58

Query  102  FICAIIGNLTRDLPDHGVASWVSANDKPSIVSKPSSGDAAEARLKTEVMQLPPRDRRRIK  161
             I +I+ N                                                    
Sbjct  59   LILSILANA---------------------------------------------------  67

Query  162  AIPERDPHEVVPNEVEEYHLAKQIKLPSQVPASAGGLNKTNWELEIRKRYAQPLASETGE  221
                                                        EIR  YA PLA E+GE
Sbjct  68   -------------------------------------------QEIRSPYAAPLAYESGE  84

Query  222  FPDAESIHARMIPICYEESVVSGAGFPCAEFMAIATETFVKEVLSVVFSRT  272
             PD +S+  RM PI YE  +V G    CA  +  A + ++K +L       
Sbjct  85   LPDTDSLRKRMEPIAYEHGLVGGVSADCANLLNNALDVYLKNLLESCIDLV  135



Lambda      K        H        a         alpha
   0.314    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00011303

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463692 pfam12767, SAGA-Tad1, Transcriptional regulator of RNA...  146     2e-43


>CDD:463692 pfam12767, SAGA-Tad1, Transcriptional regulator of RNA polII, 
SAGA, subunit.  The yeast SAGA complex is a multifunctional 
coactivator that regulates transcription by RNA polymerase 
II. It is formed of five major modular subunits and shows a 
high degree of structural conservation to human TFTC and STAGA. 
The complex can also be conceived of as consisting of two 
histone-fold-containing core subunits, and this family is 
one of these. As a family it is likely to carry binding regions 
for interactions with a number of the other components of 
the complex.
Length=135

 Score = 146 bits (371),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 76/231 (33%), Gaps = 97/231 (42%)

Query  43   RLDLEPIYTELKAAIG-ENWAEYKESTTLFLLGHLNQNELASRVDHIICADQKTEHLHNN  101
            R+DLE + T+LK  +G E W +Y E+ + FL G L++ EL    D I+  +    HLHN 
Sbjct  1    RIDLEELKTQLKKKLGPERWEKYFEALSRFLSGKLSKAELDKLCDPILGRE--NLHLHNQ  58

Query  102  FICAIIGNLTRDLPDHGVASWVSANDKPSIVSKPSSGDAAEARLKTEVMQLPPRDRRRIK  161
             I +I+ N                                                    
Sbjct  59   LILSILANA---------------------------------------------------  67

Query  162  AIPERDPHEVVPNEVEEYHLAKQIKLPSQVPASAGGLNKTNWELEIRKRYAQPLASETGE  221
                                                        EIR  YA PLA E+GE
Sbjct  68   -------------------------------------------QEIRSPYAAPLAYESGE  84

Query  222  FPDAESIHARMIPICYEESVVSGAGFPCAEFMAIATETFVKEVLSVVFSRT  272
             PD +S+  RM PI YE  +V G    CA  +  A + ++K +L       
Sbjct  85   LPDTDSLRKRMEPIAYEHGLVGGVSADCANLLNNALDVYLKNLLESCIDLV  135



Lambda      K        H        a         alpha
   0.314    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00011305

Length=74
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463692 pfam12767, SAGA-Tad1, Transcriptional regulator of RNA...  53.6    1e-11


>CDD:463692 pfam12767, SAGA-Tad1, Transcriptional regulator of RNA polII, 
SAGA, subunit.  The yeast SAGA complex is a multifunctional 
coactivator that regulates transcription by RNA polymerase 
II. It is formed of five major modular subunits and shows a 
high degree of structural conservation to human TFTC and STAGA. 
The complex can also be conceived of as consisting of two 
histone-fold-containing core subunits, and this family is 
one of these. As a family it is likely to carry binding regions 
for interactions with a number of the other components of 
the complex.
Length=135

 Score = 53.6 bits (130),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 18/41 (44%), Gaps = 0/41 (0%)

Query  1    MIPICYEESVVSGAGFPCAEFMAIATETFVKEVLSVVFSRT  41
            M PI YE  +V G    CA  +  A + ++K +L       
Sbjct  95   MEPIAYEHGLVGGVSADCANLLNNALDVYLKNLLESCIDLV  135



Lambda      K        H        a         alpha
   0.323    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00017635

Length=1054
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433273 pfam13515, FUSC_2, Fusaric acid resistance protein-like    101     7e-26


>CDD:433273 pfam13515, FUSC_2, Fusaric acid resistance protein-like.  
Length=126

 Score = 101 bits (255),  Expect = 7e-26, Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 53/137 (39%), Gaps = 18/137 (13%)

Query  693  FYSHWRGEWGLLSYMLVCSMTIGASNTTGYSRFLGTCLGAICAITAWYVTDGNVFGLAIL  752
                 RG W  ++  +V   T+GA+      R LGT LG +  +    +  G +     L
Sbjct  8    LLGLPRGYWAPIAAAIVLQPTLGATLRRAVQRILGTVLGVLLGLLLLALLPGPL----QL  63

Query  753  GLVMATWTSYIIVVMGKGPMGRFIMLTYNLSVLYAYSLTQREGSDDQDEGGDSPIITDIT  812
             LV+A        ++G+      + +T    +L + +            GG  P   ++ 
Sbjct  64   ILVVALLGFLAEYLIGRNYALAQVFVTPLALLLASLA------------GGGGPP--ELA  109

Query  813  LHRVAAVLSGCIWGIII  829
            L R+   L G +  +++
Sbjct  110  LLRILDTLIGALIALLV  126



Lambda      K        H        a         alpha
   0.320    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1356409208


Query= TCONS_00017636

Length=832
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461908 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. T...  82.6    2e-19


>CDD:461908 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal.  This domain 
is specific to the N-terminal part of the prp1 splicing 
factor, which is involved in mRNA splicing (and possibly also 
poly(A)+ RNA nuclear export and cell cycle progression). 
This domain is specific to the N-terminus of the RNA splicing 
factor encoded by prp1. It is involved in mRNA splicing and 
possibly also poly(A)and RNA nuclear export and cell cycle 
progression.
Length=109

 Score = 82.6 bits (205),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 29/36 (81%), Positives = 33/36 (92%), Gaps = 0/36 (0%)

Query  47   KNPKIQQQFADLKRSLASVSEEQWANLPEVGDLTGK  82
            + PKIQQQFADLKR LA+VSEE+WAN+PEVGDLT K
Sbjct  74   ERPKIQQQFADLKRGLATVSEEEWANIPEVGDLTRK  109



Lambda      K        H        a         alpha
   0.316    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1057973818


Query= TCONS_00011306

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433273 pfam13515, FUSC_2, Fusaric acid resistance protein-like    71.9    2e-16


>CDD:433273 pfam13515, FUSC_2, Fusaric acid resistance protein-like.  
Length=126

 Score = 71.9 bits (177),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 22/123 (18%), Positives = 45/123 (37%), Gaps = 18/123 (15%)

Query  1    MLVCSMTIGASNTTGYSRFLGTCLGAICAITAWYVTDGNVFGLAILGLVMATWTSYIIVV  60
             +V   T+GA+      R LGT LG +  +    +  G +     L LV+A        +
Sbjct  22   AIVLQPTLGATLRRAVQRILGTVLGVLLGLLLLALLPGPL----QLILVVALLGFLAEYL  77

Query  61   MGKGPMGRFIMLTYNLSVLYAYSLTQREGSDDQDEGGDSPIITDITLHRVAAVLSGCIWG  120
            +G+      + +T    +L + +                    ++ L R+   L G +  
Sbjct  78   IGRNYALAQVFVTPLALLLASLAGGGG--------------PPELALLRILDTLIGALIA  123

Query  121  III  123
            +++
Sbjct  124  LLV  126



Lambda      K        H        a         alpha
   0.324    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00017637

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433273 pfam13515, FUSC_2, Fusaric acid resistance protein-like    75.0    3e-17


>CDD:433273 pfam13515, FUSC_2, Fusaric acid resistance protein-like.  
Length=126

 Score = 75.0 bits (185),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 22/123 (18%), Positives = 45/123 (37%), Gaps = 18/123 (15%)

Query  1    MLVCSMTIGASNTTGYSRFLGTCLGAICAITAWYVTDGNVFGLAILGLVMATWTSYIIVV  60
             +V   T+GA+      R LGT LG +  +    +  G +     L LV+A        +
Sbjct  22   AIVLQPTLGATLRRAVQRILGTVLGVLLGLLLLALLPGPL----QLILVVALLGFLAEYL  77

Query  61   MGKGPMGRFIMLTYNLSVLYAYSLTQREGSDDQDEGGDSPIITDITLHRVAAVLSGCIWG  120
            +G+      + +T    +L + +                    ++ L R+   L G +  
Sbjct  78   IGRNYALAQVFVTPLALLLASLAGGGG--------------PPELALLRILDTLIGALIA  123

Query  121  III  123
            +++
Sbjct  124  LLV  126



Lambda      K        H        a         alpha
   0.323    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00011307

Length=1037
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433273 pfam13515, FUSC_2, Fusaric acid resistance protein-like    101     1e-25


>CDD:433273 pfam13515, FUSC_2, Fusaric acid resistance protein-like.  
Length=126

 Score = 101 bits (253),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 53/137 (39%), Gaps = 18/137 (13%)

Query  676  FYSHWRGEWGLLSYMLVCSMTIGASNTTGYSRFLGTCLGAICAITAWYVTDGNVFGLAIL  735
                 RG W  ++  +V   T+GA+      R LGT LG +  +    +  G +     L
Sbjct  8    LLGLPRGYWAPIAAAIVLQPTLGATLRRAVQRILGTVLGVLLGLLLLALLPGPL----QL  63

Query  736  GLVMATWTSYIIVVMGKGPMGRFIMLTYNLSVLYAYSLTQREGSDDQDEGGDSPIITDIT  795
             LV+A        ++G+      + +T    +L + +            GG  P   ++ 
Sbjct  64   ILVVALLGFLAEYLIGRNYALAQVFVTPLALLLASLA------------GGGGPP--ELA  109

Query  796  LHRVAAVLSGCIWGIII  812
            L R+   L G +  +++
Sbjct  110  LLRILDTLIGALIALLV  126



Lambda      K        H        a         alpha
   0.320    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1332339316


Query= TCONS_00011308

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463692 pfam12767, SAGA-Tad1, Transcriptional regulator of RNA...  146     2e-43


>CDD:463692 pfam12767, SAGA-Tad1, Transcriptional regulator of RNA polII, 
SAGA, subunit.  The yeast SAGA complex is a multifunctional 
coactivator that regulates transcription by RNA polymerase 
II. It is formed of five major modular subunits and shows a 
high degree of structural conservation to human TFTC and STAGA. 
The complex can also be conceived of as consisting of two 
histone-fold-containing core subunits, and this family is 
one of these. As a family it is likely to carry binding regions 
for interactions with a number of the other components of 
the complex.
Length=135

 Score = 146 bits (371),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 76/231 (33%), Gaps = 97/231 (42%)

Query  43   RLDLEPIYTELKAAIG-ENWAEYKESTTLFLLGHLNQNELASRVDHIICADQKTEHLHNN  101
            R+DLE + T+LK  +G E W +Y E+ + FL G L++ EL    D I+  +    HLHN 
Sbjct  1    RIDLEELKTQLKKKLGPERWEKYFEALSRFLSGKLSKAELDKLCDPILGRE--NLHLHNQ  58

Query  102  FICAIIGNLTRDLPDHGVASWVSANDKPSIVSKPSSGDAAEARLKTEVMQLPPRDRRRIK  161
             I +I+ N                                                    
Sbjct  59   LILSILANA---------------------------------------------------  67

Query  162  AIPERDPHEVVPNEVEEYHLAKQIKLPSQVPASAGGLNKTNWELEIRKRYAQPLASETGE  221
                                                        EIR  YA PLA E+GE
Sbjct  68   -------------------------------------------QEIRSPYAAPLAYESGE  84

Query  222  FPDAESIHARMIPICYEESVVSGAGFPCAEFMAIATETFVKEVLSVVFSRT  272
             PD +S+  RM PI YE  +V G    CA  +  A + ++K +L       
Sbjct  85   LPDTDSLRKRMEPIAYEHGLVGGVSADCANLLNNALDVYLKNLLESCIDLV  135



Lambda      K        H        a         alpha
   0.314    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00017638

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00011311

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463692 pfam12767, SAGA-Tad1, Transcriptional regulator of RNA...  148     6e-44


>CDD:463692 pfam12767, SAGA-Tad1, Transcriptional regulator of RNA polII, 
SAGA, subunit.  The yeast SAGA complex is a multifunctional 
coactivator that regulates transcription by RNA polymerase 
II. It is formed of five major modular subunits and shows a 
high degree of structural conservation to human TFTC and STAGA. 
The complex can also be conceived of as consisting of two 
histone-fold-containing core subunits, and this family is 
one of these. As a family it is likely to carry binding regions 
for interactions with a number of the other components of 
the complex.
Length=135

 Score = 148 bits (375),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 54/226 (24%), Positives = 76/226 (34%), Gaps = 92/226 (41%)

Query  43   RLDLEPIYTELKAAIG-ENWAEYKESTTLFLLGHLNQNELASRVDHIICADQKTEHLHNN  101
            R+DLE + T+LK  +G E W +Y E+ + FL G L++ EL    D I+  +    HLHN 
Sbjct  1    RIDLEELKTQLKKKLGPERWEKYFEALSRFLSGKLSKAELDKLCDPILGRE--NLHLHNQ  58

Query  102  FICAIIGNLTRDLPDHGVASWVSANDKPSIVSKPSSGDAAEARLKTEVMQLPPRDRRRIK  161
             I +I+ N                                                    
Sbjct  59   LILSILANA---------------------------------------------------  67

Query  162  AIPEVLPNEVEEYHLAKQIKLPSQVPASAGGLNKTNWELEIRKRYAQPLASETGEFPDAE  221
                                                   EIR  YA PLA E+GE PD +
Sbjct  68   --------------------------------------QEIRSPYAAPLAYESGELPDTD  89

Query  222  SIHARMIPICYEESVVSGAGFPCAEFMAIATETFVKEVLSVVFSRT  267
            S+  RM PI YE  +V G    CA  +  A + ++K +L       
Sbjct  90   SLRKRMEPIAYEHGLVGGVSADCANLLNNALDVYLKNLLESCIDLV  135



Lambda      K        H        a         alpha
   0.314    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00017639

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00011312

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.296    0.116    0.317    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00011313

Length=580
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  71.5    3e-16


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 71.5 bits (176),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (2%)

Query  196  IFVGGVSQEATEQEFKEFFTQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR  254
            +FVG +  + TE++ K+ F++FG +    L+ D +TGR +GF FV F+ E   E A+  
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEA  58


 Score = 69.6 bits (171),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 25/68 (37%), Positives = 42/68 (62%), Gaps = 4/68 (6%)

Query  113  FIGGLNWETTDQSLRDYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVKEH  172
            F+G L  +TT++ L+D FS+FG ++   ++RD  TGRS+GF F+ F+D +     +    
Sbjct  2    FVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEA--  58

Query  173  YLDGKIID  180
             L+GK + 
Sbjct  59   -LNGKELG  65



Lambda      K        H        a         alpha
   0.312    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 729280864


Query= TCONS_00017640

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00017641

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.297    0.114    0.315    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00011314

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  71.5    3e-16


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 71.5 bits (176),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (2%)

Query  87   IFVGGVSQEATEQEFKEFFTQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR  145
            +FVG +  + TE++ K+ F++FG +    L+ D +TGR +GF FV F+ E   E A+  
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEA  58


 Score = 69.6 bits (171),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 25/68 (37%), Positives = 42/68 (62%), Gaps = 4/68 (6%)

Query  4   FIGGLNWETTDQSLRDYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVKEH  63
           F+G L  +TT++ L+D FS+FG ++   ++RD  TGRS+GF F+ F+D +     +    
Sbjct  2   FVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEA--  58

Query  64  YLDGKIID  71
            L+GK + 
Sbjct  59  -LNGKELG  65



Lambda      K        H        a         alpha
   0.318    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00011315

Length=562
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  71.5    3e-16


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 71.5 bits (176),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (2%)

Query  196  IFVGGVSQEATEQEFKEFFTQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR  254
            +FVG +  + TE++ K+ F++FG +    L+ D +TGR +GF FV F+ E   E A+  
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEA  58


 Score = 69.6 bits (171),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 25/68 (37%), Positives = 42/68 (62%), Gaps = 4/68 (6%)

Query  113  FIGGLNWETTDQSLRDYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVKEH  172
            F+G L  +TT++ L+D FS+FG ++   ++RD  TGRS+GF F+ F+D +     +    
Sbjct  2    FVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEA--  58

Query  173  YLDGKIID  180
             L+GK + 
Sbjct  59   -LNGKELG  65



Lambda      K        H        a         alpha
   0.311    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0770    0.140     1.90     42.6     43.6 

Effective search space used: 702381160


Query= TCONS_00011316

Length=608
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  71.5    4e-16


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 71.5 bits (176),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (2%)

Query  191  IFVGGVSQEATEQEFKEFFTQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR  249
            +FVG +  + TE++ K+ F++FG +    L+ D +TGR +GF FV F+ E   E A+  
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEA  58


 Score = 69.6 bits (171),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 25/68 (37%), Positives = 42/68 (62%), Gaps = 4/68 (6%)

Query  108  FIGGLNWETTDQSLRDYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVKEH  167
            F+G L  +TT++ L+D FS+FG ++   ++RD  TGRS+GF F+ F+D +     +    
Sbjct  2    FVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEA--  58

Query  168  YLDGKIID  175
             L+GK + 
Sbjct  59   -LNGKELG  65



Lambda      K        H        a         alpha
   0.314    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 771124848


Query= TCONS_00011319

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.122    0.328    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00011318

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394979 pfam00022, Actin, Actin                                    538     0.0  


>CDD:394979 pfam00022, Actin, Actin.  
Length=407

 Score = 538 bits (1389),  Expect = 0.0, Method: Composition-based stats.
 Identities = 200/460 (43%), Positives = 265/460 (58%), Gaps = 57/460 (12%)

Query  11   ISAIVLDPGFSTTRAGFAGEDTPKSVIPTYYGKYTYEAQE---KLIFGDDIFVTPRPGLS  67
            +SA+V+D G  TTRAGFAGED PK+VIP+  GK      E   K   GD+  +T RPG+ 
Sbjct  1    VSALVIDNGSHTTRAGFAGEDAPKAVIPSCVGKPRGTKVEAANKYYVGDEA-LTYRPGME  59

Query  68   IHNPMGRDGVVEDWDMAEKVWEYSFTSRLTGPKAGNPFQNGLNDVANGELPSEMEGVETE  127
            + +P+  DG+V DWD  E++WE+     L                           V+ E
Sbjct  60   VRSPV-EDGIVVDWDAMEEIWEHVLKEELQ--------------------------VDPE  92

Query  128  EKPLADSPLLMTECGWNPTKAREKTVEIAMEKWGTPAFYLARNGVLAAFAAGKASALVVD  187
            E      PLL+TE  WNP   REK  EI  EK+G PA YLA+N VL+AFA+G+ + LVVD
Sbjct  93   E-----HPLLLTEPPWNPPANREKAAEIMFEKFGVPALYLAKNPVLSAFASGRTTGLVVD  147

Query  188  VGASNISVTPVHDGMILKRGVQHSPLGGDYISSQLRALFKTNSPQPITITPHYLVASKTA  247
             GA   SV PVHDG +L++ ++ S LGGD+++  LR L ++   + I ITP YL+ SK  
Sbjct  148  SGAGVTSVVPVHDGYVLQKAIRRSDLGGDFLTDYLRELLRS---RNIEITPRYLIKSKKP  204

Query  248  VDAGQPAQAKYKTFPPDKAPDASYRTLMEERTLSEFKECVVQVWPGPNKLSATGPNGVSN  307
                    A   T         SY+T  E R L E KE V  V   P            +
Sbjct  205  -----GDPAPAVTKRELPDTTYSYKTYQERRVLEEIKESVCYVSDDPFG----------D  249

Query  308  EEVAKSSPGRPFEFPDGYNQVFGIDRYRVVESLFDAKAAIPDPESVFPAPTQAQTVPELI  367
            E  + S P R +E PDG   + G +R+RV E LF+      + E   P P  A  +PELI
Sbjct  250  ETTSSSIPTRVYELPDGSTIILGAERFRVPEILFNPSLIGSESE--LPPPQTAVGIPELI  307

Query  368  KAALNGVDVDVRPHLLANVVVTGASSLLYGFTDRLNQELMQ-SYPGPRVRISASGNTAER  426
              A+N  DVD+RP LLAN+VVTG +SL  GFT+RL +EL Q + PG +V+I A GNT ER
Sbjct  308  VDAINACDVDLRPSLLANIVVTGGNSLFPGFTERLEKELAQLAPPGVKVKIIAPGNTVER  367

Query  427  KFGSWVGGSILASLGTFHQMWISKKEYDEHGPNIVEKRCK  466
            ++ +W+GGSILASLGTF QMW+SK+EY+EHG ++VE++CK
Sbjct  368  RYSAWIGGSILASLGTFQQMWVSKQEYEEHGASVVERKCK  407



Lambda      K        H        a         alpha
   0.315    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00017643

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.321    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00011320

Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394979 pfam00022, Actin, Actin                                    113     5e-32


>CDD:394979 pfam00022, Actin, Actin.  
Length=407

 Score = 113 bits (284),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 5/81 (6%)

Query  17  ISAIVLDPGFSTTRAGFAGEDTPKSVIPTYYGKYTYEAQE---KLIFGDDIFVTPRPGLS  73
           +SA+V+D G  TTRAGFAGED PK+VIP+  GK      E   K   GD+  +T RPG+ 
Sbjct  1   VSALVIDNGSHTTRAGFAGEDAPKAVIPSCVGKPRGTKVEAANKYYVGDEA-LTYRPGME  59

Query  74  IHNPMGRDGVVEDWDMAEKVW  94
           + +P+  DG+V DWD  E++W
Sbjct  60  VRSPV-EDGIVVDWDAMEEIW  79



Lambda      K        H        a         alpha
   0.315    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00011321

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394979 pfam00022, Actin, Actin                                    537     0.0  


>CDD:394979 pfam00022, Actin, Actin.  
Length=407

 Score = 537 bits (1385),  Expect = 0.0, Method: Composition-based stats.
 Identities = 200/460 (43%), Positives = 265/460 (58%), Gaps = 57/460 (12%)

Query  17   ISAIVLDPGFSTTRAGFAGEDTPKSVIPTYYGKYTYEAQE---KLIFGDDIFVTPRPGLS  73
            +SA+V+D G  TTRAGFAGED PK+VIP+  GK      E   K   GD+  +T RPG+ 
Sbjct  1    VSALVIDNGSHTTRAGFAGEDAPKAVIPSCVGKPRGTKVEAANKYYVGDEA-LTYRPGME  59

Query  74   IHNPMGRDGVVEDWDMAEKVWEYSFTSRLTGPKAGNPFQNGLNDVANGELPSEMEGVETE  133
            + +P+  DG+V DWD  E++WE+     L                           V+ E
Sbjct  60   VRSPV-EDGIVVDWDAMEEIWEHVLKEELQ--------------------------VDPE  92

Query  134  EKPLADSPLLMTECGWNPTKAREKTVEIAMEKWGTPAFYLARNGVLAAFAAGKASALVVD  193
            E      PLL+TE  WNP   REK  EI  EK+G PA YLA+N VL+AFA+G+ + LVVD
Sbjct  93   E-----HPLLLTEPPWNPPANREKAAEIMFEKFGVPALYLAKNPVLSAFASGRTTGLVVD  147

Query  194  VGASNISVTPVHDGMILKRGVQHSPLGGDYISSQLRALFKTNSPQPITITPHYLVASKTA  253
             GA   SV PVHDG +L++ ++ S LGGD+++  LR L ++   + I ITP YL+ SK  
Sbjct  148  SGAGVTSVVPVHDGYVLQKAIRRSDLGGDFLTDYLRELLRS---RNIEITPRYLIKSKKP  204

Query  254  VDAGQPAQAKYKTFPPDKAPDASYRTLMEERTLSEFKECVVQVWPGPNKLSATGPNGVSN  313
                    A   T         SY+T  E R L E KE V  V   P            +
Sbjct  205  -----GDPAPAVTKRELPDTTYSYKTYQERRVLEEIKESVCYVSDDPFG----------D  249

Query  314  EEVAKSSPGRPFEFPDGYNQVFGIDRYRVVESLFDAKAAIPDPESVFPAPTQAQTVPELI  373
            E  + S P R +E PDG   + G +R+RV E LF+      + E   P P  A  +PELI
Sbjct  250  ETTSSSIPTRVYELPDGSTIILGAERFRVPEILFNPSLIGSESE--LPPPQTAVGIPELI  307

Query  374  KAALNGVDVDVRPHLLANVVVTGASSLLYGFTDRLNQELMQ-SYPGPRVRISASGNTAER  432
              A+N  DVD+RP LLAN+VVTG +SL  GFT+RL +EL Q + PG +V+I A GNT ER
Sbjct  308  VDAINACDVDLRPSLLANIVVTGGNSLFPGFTERLEKELAQLAPPGVKVKIIAPGNTVER  367

Query  433  KFGSWVGGSILASLGTFHQMWISKKEYDEHGPNIVEKRCK  472
            ++ +W+GGSILASLGTF QMW+SK+EY+EHG ++VE++CK
Sbjct  368  RYSAWIGGSILASLGTFQQMWVSKQEYEEHGASVVERKCK  407



Lambda      K        H        a         alpha
   0.314    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00011322

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00017644

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397331 pfam03167, UDG, Uracil DNA glycosylase superfamily         75.8    2e-17


>CDD:397331 pfam03167, UDG, Uracil DNA glycosylase superfamily.  
Length=154

 Score = 75.8 bits (187),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 34/157 (22%), Positives = 53/157 (34%), Gaps = 38/157 (24%)

Query  125  VKVVIIGQDPYHNHNQAHGLAFSVRPPTPAPPSLVNIYTGIKNDYPTFQPPPNKGGLLIP  184
             KV+I+G+ P      A GL F  R        L+N   G+  D  + Q           
Sbjct  8    AKVLIVGEAPGA-DEDATGLPFVGRAG-NLLWKLLNA-AGLTRDLFSPQ-----------  53

Query  185  WAERGVLMLNTCL---TVRAHQAASHSNKGWERFTQKAIDTVARVRTNGVVFLAWGSPAG  241
                GV + N        R    +   +  W     +    +  +R    V +  G  A 
Sbjct  54   ----GVYITNVVKCRPGNRRKPTSHEIDACWPYLEAE----IELLRPR--VIVLLGKTAA  103

Query  242  KRVAG-----------INRQKHCVLQSVHPSPLSAHR  267
            K + G           I+ +   VL + HPSPL  ++
Sbjct  104  KALLGLKKITKLRGKLIDLKGIPVLPTPHPSPLLRNK  140



Lambda      K        H        a         alpha
   0.318    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00011323

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397331 pfam03167, UDG, Uracil DNA glycosylase superfamily         75.8    2e-17


>CDD:397331 pfam03167, UDG, Uracil DNA glycosylase superfamily.  
Length=154

 Score = 75.8 bits (187),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 34/157 (22%), Positives = 53/157 (34%), Gaps = 38/157 (24%)

Query  125  VKVVIIGQDPYHNHNQAHGLAFSVRPPTPAPPSLVNIYTGIKNDYPTFQPPPNKGGLLIP  184
             KV+I+G+ P      A GL F  R        L+N   G+  D  + Q           
Sbjct  8    AKVLIVGEAPGA-DEDATGLPFVGRAG-NLLWKLLNA-AGLTRDLFSPQ-----------  53

Query  185  WAERGVLMLNTCL---TVRAHQAASHSNKGWERFTQKAIDTVARVRTNGVVFLAWGSPAG  241
                GV + N        R    +   +  W     +    +  +R    V +  G  A 
Sbjct  54   ----GVYITNVVKCRPGNRRKPTSHEIDACWPYLEAE----IELLRPR--VIVLLGKTAA  103

Query  242  KRVAG-----------INRQKHCVLQSVHPSPLSAHR  267
            K + G           I+ +   VL + HPSPL  ++
Sbjct  104  KALLGLKKITKLRGKLIDLKGIPVLPTPHPSPLLRNK  140



Lambda      K        H        a         alpha
   0.318    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00017645

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00011324

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397331 pfam03167, UDG, Uracil DNA glycosylase superfamily         82.4    8e-20


>CDD:397331 pfam03167, UDG, Uracil DNA glycosylase superfamily.  
Length=154

 Score = 82.4 bits (204),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 57/171 (33%), Gaps = 42/171 (25%)

Query  125  VKVVIIGQDPYHNHNQAHGLAFSVRPPTPAPPSLVNIYTGIKNDYPTFQPPPNKGGLLIP  184
             KV+I+G+ P      A GL F  R        L+N   G+  D  + Q           
Sbjct  8    AKVLIVGEAPGA-DEDATGLPFVGRAG-NLLWKLLNA-AGLTRDLFSPQ-----------  53

Query  185  WAERGVLMLNTCL---TVRAHQAASHSNKGWERFTQKAIDTVARVRTNGVVFLAWGSPAG  241
                GV + N        R    +   +  W     +    +  +R    V +  G  A 
Sbjct  54   ----GVYITNVVKCRPGNRRKPTSHEIDACWPYLEAE----IELLRPR--VIVLLGKTAA  103

Query  242  KRVAG-----------INRQKHCVLQSVHPSPLSAHRGFFNNGHFKKCNEW  281
            K + G           I+ +   VL + HPSPL  ++       F K N W
Sbjct  104  KALLGLKKITKLRGKLIDLKGIPVLPTPHPSPLLRNK----LNPFLKANAW  150



Lambda      K        H        a         alpha
   0.317    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00011325

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00011326

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397331 pfam03167, UDG, Uracil DNA glycosylase superfamily         75.8    2e-17


>CDD:397331 pfam03167, UDG, Uracil DNA glycosylase superfamily.  
Length=154

 Score = 75.8 bits (187),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 34/157 (22%), Positives = 53/157 (34%), Gaps = 38/157 (24%)

Query  133  VKVVIIGQDPYHNHNQAHGLAFSVRPPTPAPPSLVNIYTGIKNDYPTFQPPPNKGGLLIP  192
             KV+I+G+ P      A GL F  R        L+N   G+  D  + Q           
Sbjct  8    AKVLIVGEAPGA-DEDATGLPFVGRAG-NLLWKLLNA-AGLTRDLFSPQ-----------  53

Query  193  WAERGVLMLNTCL---TVRAHQAASHSNKGWERFTQKAIDTVARVRTNGVVFLAWGSPAG  249
                GV + N        R    +   +  W     +    +  +R    V +  G  A 
Sbjct  54   ----GVYITNVVKCRPGNRRKPTSHEIDACWPYLEAE----IELLRPR--VIVLLGKTAA  103

Query  250  KRVAG-----------INRQKHCVLQSVHPSPLSAHR  275
            K + G           I+ +   VL + HPSPL  ++
Sbjct  104  KALLGLKKITKLRGKLIDLKGIPVLPTPHPSPLLRNK  140



Lambda      K        H        a         alpha
   0.317    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00017646

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00011327

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00017647

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00011328

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00017648

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00011329

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00017649

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00011330

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like. Autopha...  530     0.0  


>CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like.  Autophagy is 
a major survival survival mechanism in which eukaryotes recycle 
cellular nutrients during stress conditions. Atg22, Avt3 
and Avt4 are partially redundant vacuolar effluxes, which mediate 
the efflux of leucine and other amino acids resulting 
from autophagy. This family also includes other transporter 
proteins.
Length=479

 Score = 530 bits (1368),  Expect = 0.0, Method: Composition-based stats.
 Identities = 267/527 (51%), Positives = 327/527 (62%), Gaps = 86/527 (16%)

Query  1    MARDRGVLFSDKVTPCSATLNGPSRMSIQARWTLSSRYDAGRPTVANQCVVYIFGVEINT  60
            +AR+ GVL SD   PCSA                            +QCVVY  G EI+T
Sbjct  35   LARENGVLLSDHSAPCSAD--------------------------GDQCVVYFGGGEIDT  68

Query  61   ASFAMYTFSVSVFIQAILIISMSGAADHGSHRKLLLMAFAVIGSVSTMLFLGVVPKIYMV  120
             SF +YTFS+SV +QA++ IS+SG AD+G++RK LL+AFA+IGS STMLFLGV PK Y++
Sbjct  69   TSFVLYTFSISVLLQAVVFISLSGIADYGNYRKNLLIAFALIGSASTMLFLGVTPKKYLL  128

Query  121  GAVIAIIANTCFGASFVLLNSFLPLLVRHHPSVLRSAREPRPALDDSRAQEGHSDTTNGI  180
            GA++ I+ NTCFGASFV LNSFLPLL R+ P +  +A                       
Sbjct  129  GAILYIVGNTCFGASFVFLNSFLPLLARNDPELRAAAEA---------------------  167

Query  181  EHGIESNVTSPLLHARQGNGENAEADMHPATHITVSQELKVSTRISSFGIGIGYIGAIIL  240
                                   + +         S EL++ TRISS G GIGYIG I++
Sbjct  168  ---------------------LQDGESAITAEEYDSLELQLRTRISSRGFGIGYIGGILV  206

Query  241  QIVCILVVIATNQT----TYSLRLVLFLIGLWWFIFSIPAALWLRSRPGPPLATTHHGKH  296
            QI+ I++V A   T    T++LRL +   G WW IF+IP ALWLR RPGPPL        
Sbjct  207  QIISIIIVYALGSTASNNTWALRLAITFAGCWWIIFTIPWALWLRPRPGPPL--------  258

Query  297  TRSWIGYMAYSWKSLYRTAVRTRHLKDILLFLAAWLLLSDGIATVSGTAVLFAKTQLNMQ  356
              S + Y+ Y WK L RT  + R LKD LLFL AW LLSDGIATVS TAVLFAKT+L M 
Sbjct  259  -PSGLNYLIYGWKQLGRTLKQARKLKDALLFLVAWFLLSDGIATVSSTAVLFAKTELGMS  317

Query  357  PAALGLINVIAMVAGVLGAFSWGSFSRVFNLSASQTIIACILLFELVPLYGLLGFIPAIK  416
             + L L+N++AM+A VLGAF W   SR FNL   QT+IACI+LFEL+PLYGLLG I    
Sbjct  318  TSQLTLLNIVAMIAAVLGAFLWPFVSRRFNLKTKQTLIACIVLFELIPLYGLLGII----  373

Query  417  SLGFLGLQQPWEMFPLGIVYGLVMGGLSSYCRSFFGELIPPGNEAAFYALYAITDKGSSI  476
             LG +GL+ PWE + L   YGLV+GGL SY RS + ELIP G EA F++LYAITDKGSS 
Sbjct  374  -LGKIGLKNPWEFWVLQAFYGLVLGGLRSYSRSLYSELIPRGKEAQFFSLYAITDKGSSW  432

Query  477  FGPTIVGIITDRYGEIRPAFVFLAILIFLPLPLMLLVDVERGKRDAL  523
             GP IVG I DR G IR  FVFLAIL+ +PLPL+LLVDVERG+R+A 
Sbjct  433  IGPLIVGAIQDRTGNIRSPFVFLAILLVVPLPLLLLVDVERGRREAA  479



Lambda      K        H        a         alpha
   0.325    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 687436880


Query= TCONS_00011331

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like. Autopha...  530     0.0  


>CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like.  Autophagy is 
a major survival survival mechanism in which eukaryotes recycle 
cellular nutrients during stress conditions. Atg22, Avt3 
and Avt4 are partially redundant vacuolar effluxes, which mediate 
the efflux of leucine and other amino acids resulting 
from autophagy. This family also includes other transporter 
proteins.
Length=479

 Score = 530 bits (1368),  Expect = 0.0, Method: Composition-based stats.
 Identities = 267/527 (51%), Positives = 327/527 (62%), Gaps = 86/527 (16%)

Query  1    MARDRGVLFSDKVTPCSATLNGPSRMSIQARWTLSSRYDAGRPTVANQCVVYIFGVEINT  60
            +AR+ GVL SD   PCSA                            +QCVVY  G EI+T
Sbjct  35   LARENGVLLSDHSAPCSAD--------------------------GDQCVVYFGGGEIDT  68

Query  61   ASFAMYTFSVSVFIQAILIISMSGAADHGSHRKLLLMAFAVIGSVSTMLFLGVVPKIYMV  120
             SF +YTFS+SV +QA++ IS+SG AD+G++RK LL+AFA+IGS STMLFLGV PK Y++
Sbjct  69   TSFVLYTFSISVLLQAVVFISLSGIADYGNYRKNLLIAFALIGSASTMLFLGVTPKKYLL  128

Query  121  GAVIAIIANTCFGASFVLLNSFLPLLVRHHPSVLRSAREPRPALDDSRAQEGHSDTTNGI  180
            GA++ I+ NTCFGASFV LNSFLPLL R+ P +  +A                       
Sbjct  129  GAILYIVGNTCFGASFVFLNSFLPLLARNDPELRAAAEA---------------------  167

Query  181  EHGIESNVTSPLLHARQGNGENAEADMHPATHITVSQELKVSTRISSFGIGIGYIGAIIL  240
                                   + +         S EL++ TRISS G GIGYIG I++
Sbjct  168  ---------------------LQDGESAITAEEYDSLELQLRTRISSRGFGIGYIGGILV  206

Query  241  QIVCILVVIATNQT----TYSLRLVLFLIGLWWFIFSIPAALWLRSRPGPPLATTHHGKH  296
            QI+ I++V A   T    T++LRL +   G WW IF+IP ALWLR RPGPPL        
Sbjct  207  QIISIIIVYALGSTASNNTWALRLAITFAGCWWIIFTIPWALWLRPRPGPPL--------  258

Query  297  TRSWIGYMAYSWKSLYRTAVRTRHLKDILLFLAAWLLLSDGIATVSGTAVLFAKTQLNMQ  356
              S + Y+ Y WK L RT  + R LKD LLFL AW LLSDGIATVS TAVLFAKT+L M 
Sbjct  259  -PSGLNYLIYGWKQLGRTLKQARKLKDALLFLVAWFLLSDGIATVSSTAVLFAKTELGMS  317

Query  357  PAALGLINVIAMVAGVLGAFSWGSFSRVFNLSASQTIIACILLFELVPLYGLLGFIPAIK  416
             + L L+N++AM+A VLGAF W   SR FNL   QT+IACI+LFEL+PLYGLLG I    
Sbjct  318  TSQLTLLNIVAMIAAVLGAFLWPFVSRRFNLKTKQTLIACIVLFELIPLYGLLGII----  373

Query  417  SLGFLGLQQPWEMFPLGIVYGLVMGGLSSYCRSFFGELIPPGNEAAFYALYAITDKGSSI  476
             LG +GL+ PWE + L   YGLV+GGL SY RS + ELIP G EA F++LYAITDKGSS 
Sbjct  374  -LGKIGLKNPWEFWVLQAFYGLVLGGLRSYSRSLYSELIPRGKEAQFFSLYAITDKGSSW  432

Query  477  FGPTIVGIITDRYGEIRPAFVFLAILIFLPLPLMLLVDVERGKRDAL  523
             GP IVG I DR G IR  FVFLAIL+ +PLPL+LLVDVERG+R+A 
Sbjct  433  IGPLIVGAIQDRTGNIRSPFVFLAILLVVPLPLLLLVDVERGRREAA  479



Lambda      K        H        a         alpha
   0.325    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 687436880


Query= TCONS_00017651

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like. Autopha...  530     0.0  


>CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like.  Autophagy is 
a major survival survival mechanism in which eukaryotes recycle 
cellular nutrients during stress conditions. Atg22, Avt3 
and Avt4 are partially redundant vacuolar effluxes, which mediate 
the efflux of leucine and other amino acids resulting 
from autophagy. This family also includes other transporter 
proteins.
Length=479

 Score = 530 bits (1368),  Expect = 0.0, Method: Composition-based stats.
 Identities = 267/527 (51%), Positives = 327/527 (62%), Gaps = 86/527 (16%)

Query  1    MARDRGVLFSDKVTPCSATLNGPSRMSIQARWTLSSRYDAGRPTVANQCVVYIFGVEINT  60
            +AR+ GVL SD   PCSA                            +QCVVY  G EI+T
Sbjct  35   LARENGVLLSDHSAPCSAD--------------------------GDQCVVYFGGGEIDT  68

Query  61   ASFAMYTFSVSVFIQAILIISMSGAADHGSHRKLLLMAFAVIGSVSTMLFLGVVPKIYMV  120
             SF +YTFS+SV +QA++ IS+SG AD+G++RK LL+AFA+IGS STMLFLGV PK Y++
Sbjct  69   TSFVLYTFSISVLLQAVVFISLSGIADYGNYRKNLLIAFALIGSASTMLFLGVTPKKYLL  128

Query  121  GAVIAIIANTCFGASFVLLNSFLPLLVRHHPSVLRSAREPRPALDDSRAQEGHSDTTNGI  180
            GA++ I+ NTCFGASFV LNSFLPLL R+ P +  +A                       
Sbjct  129  GAILYIVGNTCFGASFVFLNSFLPLLARNDPELRAAAEA---------------------  167

Query  181  EHGIESNVTSPLLHARQGNGENAEADMHPATHITVSQELKVSTRISSFGIGIGYIGAIIL  240
                                   + +         S EL++ TRISS G GIGYIG I++
Sbjct  168  ---------------------LQDGESAITAEEYDSLELQLRTRISSRGFGIGYIGGILV  206

Query  241  QIVCILVVIATNQT----TYSLRLVLFLIGLWWFIFSIPAALWLRSRPGPPLATTHHGKH  296
            QI+ I++V A   T    T++LRL +   G WW IF+IP ALWLR RPGPPL        
Sbjct  207  QIISIIIVYALGSTASNNTWALRLAITFAGCWWIIFTIPWALWLRPRPGPPL--------  258

Query  297  TRSWIGYMAYSWKSLYRTAVRTRHLKDILLFLAAWLLLSDGIATVSGTAVLFAKTQLNMQ  356
              S + Y+ Y WK L RT  + R LKD LLFL AW LLSDGIATVS TAVLFAKT+L M 
Sbjct  259  -PSGLNYLIYGWKQLGRTLKQARKLKDALLFLVAWFLLSDGIATVSSTAVLFAKTELGMS  317

Query  357  PAALGLINVIAMVAGVLGAFSWGSFSRVFNLSASQTIIACILLFELVPLYGLLGFIPAIK  416
             + L L+N++AM+A VLGAF W   SR FNL   QT+IACI+LFEL+PLYGLLG I    
Sbjct  318  TSQLTLLNIVAMIAAVLGAFLWPFVSRRFNLKTKQTLIACIVLFELIPLYGLLGII----  373

Query  417  SLGFLGLQQPWEMFPLGIVYGLVMGGLSSYCRSFFGELIPPGNEAAFYALYAITDKGSSI  476
             LG +GL+ PWE + L   YGLV+GGL SY RS + ELIP G EA F++LYAITDKGSS 
Sbjct  374  -LGKIGLKNPWEFWVLQAFYGLVLGGLRSYSRSLYSELIPRGKEAQFFSLYAITDKGSSW  432

Query  477  FGPTIVGIITDRYGEIRPAFVFLAILIFLPLPLMLLVDVERGKRDAL  523
             GP IVG I DR G IR  FVFLAIL+ +PLPL+LLVDVERG+R+A 
Sbjct  433  IGPLIVGAIQDRTGNIRSPFVFLAILLVVPLPLLLLVDVERGRREAA  479



Lambda      K        H        a         alpha
   0.325    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 687436880


Query= TCONS_00017650

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like. Autopha...  530     0.0  


>CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like.  Autophagy is 
a major survival survival mechanism in which eukaryotes recycle 
cellular nutrients during stress conditions. Atg22, Avt3 
and Avt4 are partially redundant vacuolar effluxes, which mediate 
the efflux of leucine and other amino acids resulting 
from autophagy. This family also includes other transporter 
proteins.
Length=479

 Score = 530 bits (1368),  Expect = 0.0, Method: Composition-based stats.
 Identities = 267/527 (51%), Positives = 327/527 (62%), Gaps = 86/527 (16%)

Query  1    MARDRGVLFSDKVTPCSATLNGPSRMSIQARWTLSSRYDAGRPTVANQCVVYIFGVEINT  60
            +AR+ GVL SD   PCSA                            +QCVVY  G EI+T
Sbjct  35   LARENGVLLSDHSAPCSAD--------------------------GDQCVVYFGGGEIDT  68

Query  61   ASFAMYTFSVSVFIQAILIISMSGAADHGSHRKLLLMAFAVIGSVSTMLFLGVVPKIYMV  120
             SF +YTFS+SV +QA++ IS+SG AD+G++RK LL+AFA+IGS STMLFLGV PK Y++
Sbjct  69   TSFVLYTFSISVLLQAVVFISLSGIADYGNYRKNLLIAFALIGSASTMLFLGVTPKKYLL  128

Query  121  GAVIAIIANTCFGASFVLLNSFLPLLVRHHPSVLRSAREPRPALDDSRAQEGHSDTTNGI  180
            GA++ I+ NTCFGASFV LNSFLPLL R+ P +  +A                       
Sbjct  129  GAILYIVGNTCFGASFVFLNSFLPLLARNDPELRAAAEA---------------------  167

Query  181  EHGIESNVTSPLLHARQGNGENAEADMHPATHITVSQELKVSTRISSFGIGIGYIGAIIL  240
                                   + +         S EL++ TRISS G GIGYIG I++
Sbjct  168  ---------------------LQDGESAITAEEYDSLELQLRTRISSRGFGIGYIGGILV  206

Query  241  QIVCILVVIATNQT----TYSLRLVLFLIGLWWFIFSIPAALWLRSRPGPPLATTHHGKH  296
            QI+ I++V A   T    T++LRL +   G WW IF+IP ALWLR RPGPPL        
Sbjct  207  QIISIIIVYALGSTASNNTWALRLAITFAGCWWIIFTIPWALWLRPRPGPPL--------  258

Query  297  TRSWIGYMAYSWKSLYRTAVRTRHLKDILLFLAAWLLLSDGIATVSGTAVLFAKTQLNMQ  356
              S + Y+ Y WK L RT  + R LKD LLFL AW LLSDGIATVS TAVLFAKT+L M 
Sbjct  259  -PSGLNYLIYGWKQLGRTLKQARKLKDALLFLVAWFLLSDGIATVSSTAVLFAKTELGMS  317

Query  357  PAALGLINVIAMVAGVLGAFSWGSFSRVFNLSASQTIIACILLFELVPLYGLLGFIPAIK  416
             + L L+N++AM+A VLGAF W   SR FNL   QT+IACI+LFEL+PLYGLLG I    
Sbjct  318  TSQLTLLNIVAMIAAVLGAFLWPFVSRRFNLKTKQTLIACIVLFELIPLYGLLGII----  373

Query  417  SLGFLGLQQPWEMFPLGIVYGLVMGGLSSYCRSFFGELIPPGNEAAFYALYAITDKGSSI  476
             LG +GL+ PWE + L   YGLV+GGL SY RS + ELIP G EA F++LYAITDKGSS 
Sbjct  374  -LGKIGLKNPWEFWVLQAFYGLVLGGLRSYSRSLYSELIPRGKEAQFFSLYAITDKGSSW  432

Query  477  FGPTIVGIITDRYGEIRPAFVFLAILIFLPLPLMLLVDVERGKRDAL  523
             GP IVG I DR G IR  FVFLAIL+ +PLPL+LLVDVERG+R+A 
Sbjct  433  IGPLIVGAIQDRTGNIRSPFVFLAILLVVPLPLLLLVDVERGRREAA  479



Lambda      K        H        a         alpha
   0.325    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 687436880


Query= TCONS_00017652

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like. Autopha...  530     0.0  


>CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like.  Autophagy is 
a major survival survival mechanism in which eukaryotes recycle 
cellular nutrients during stress conditions. Atg22, Avt3 
and Avt4 are partially redundant vacuolar effluxes, which mediate 
the efflux of leucine and other amino acids resulting 
from autophagy. This family also includes other transporter 
proteins.
Length=479

 Score = 530 bits (1368),  Expect = 0.0, Method: Composition-based stats.
 Identities = 267/527 (51%), Positives = 327/527 (62%), Gaps = 86/527 (16%)

Query  1    MARDRGVLFSDKVTPCSATLNGPSRMSIQARWTLSSRYDAGRPTVANQCVVYIFGVEINT  60
            +AR+ GVL SD   PCSA                            +QCVVY  G EI+T
Sbjct  35   LARENGVLLSDHSAPCSAD--------------------------GDQCVVYFGGGEIDT  68

Query  61   ASFAMYTFSVSVFIQAILIISMSGAADHGSHRKLLLMAFAVIGSVSTMLFLGVVPKIYMV  120
             SF +YTFS+SV +QA++ IS+SG AD+G++RK LL+AFA+IGS STMLFLGV PK Y++
Sbjct  69   TSFVLYTFSISVLLQAVVFISLSGIADYGNYRKNLLIAFALIGSASTMLFLGVTPKKYLL  128

Query  121  GAVIAIIANTCFGASFVLLNSFLPLLVRHHPSVLRSAREPRPALDDSRAQEGHSDTTNGI  180
            GA++ I+ NTCFGASFV LNSFLPLL R+ P +  +A                       
Sbjct  129  GAILYIVGNTCFGASFVFLNSFLPLLARNDPELRAAAEA---------------------  167

Query  181  EHGIESNVTSPLLHARQGNGENAEADMHPATHITVSQELKVSTRISSFGIGIGYIGAIIL  240
                                   + +         S EL++ TRISS G GIGYIG I++
Sbjct  168  ---------------------LQDGESAITAEEYDSLELQLRTRISSRGFGIGYIGGILV  206

Query  241  QIVCILVVIATNQT----TYSLRLVLFLIGLWWFIFSIPAALWLRSRPGPPLATTHHGKH  296
            QI+ I++V A   T    T++LRL +   G WW IF+IP ALWLR RPGPPL        
Sbjct  207  QIISIIIVYALGSTASNNTWALRLAITFAGCWWIIFTIPWALWLRPRPGPPL--------  258

Query  297  TRSWIGYMAYSWKSLYRTAVRTRHLKDILLFLAAWLLLSDGIATVSGTAVLFAKTQLNMQ  356
              S + Y+ Y WK L RT  + R LKD LLFL AW LLSDGIATVS TAVLFAKT+L M 
Sbjct  259  -PSGLNYLIYGWKQLGRTLKQARKLKDALLFLVAWFLLSDGIATVSSTAVLFAKTELGMS  317

Query  357  PAALGLINVIAMVAGVLGAFSWGSFSRVFNLSASQTIIACILLFELVPLYGLLGFIPAIK  416
             + L L+N++AM+A VLGAF W   SR FNL   QT+IACI+LFEL+PLYGLLG I    
Sbjct  318  TSQLTLLNIVAMIAAVLGAFLWPFVSRRFNLKTKQTLIACIVLFELIPLYGLLGII----  373

Query  417  SLGFLGLQQPWEMFPLGIVYGLVMGGLSSYCRSFFGELIPPGNEAAFYALYAITDKGSSI  476
             LG +GL+ PWE + L   YGLV+GGL SY RS + ELIP G EA F++LYAITDKGSS 
Sbjct  374  -LGKIGLKNPWEFWVLQAFYGLVLGGLRSYSRSLYSELIPRGKEAQFFSLYAITDKGSSW  432

Query  477  FGPTIVGIITDRYGEIRPAFVFLAILIFLPLPLMLLVDVERGKRDAL  523
             GP IVG I DR G IR  FVFLAIL+ +PLPL+LLVDVERG+R+A 
Sbjct  433  IGPLIVGAIQDRTGNIRSPFVFLAILLVVPLPLLLLVDVERGRREAA  479



Lambda      K        H        a         alpha
   0.325    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 687436880


Query= TCONS_00011332

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462543 pfam08638, Med14, Mediator complex subunit MED14. Sacc...  256     2e-79


>CDD:462543 pfam08638, Med14, Mediator complex subunit MED14.  Saccharomyces 
cerevisiae RGR1 mediator complex subunit affects chromatin 
structure, transcriptional regulation of diverse genes and 
sporulation, required for glucose repression, HO repression, 
RME1 repression and sporulation. This subunit is also found 
in higher eukaryotes and Med14 is the agreed unified nomenclature 
for this subunit. Med14 is found in the tail region 
of Mediator.
Length=192

 Score = 256 bits (656),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 101/212 (48%), Positives = 127/212 (60%), Gaps = 23/212 (11%)

Query  75   FFPFSTLVNRSVQQCWNELSDLITELAAIHVSPHSSVPLLPVNGKSPGNQSPENVQKKLR  134
            F P S LV+R VQ+ +NELS+LI  L                      N S  +V+KK R
Sbjct  1    FVPLSLLVDRLVQRSYNELSELIETLP---------------------NTSESDVEKKRR  39

Query  135  ILDFAHAKRAEFIKLLVLSQWSRRARDVSKLIDLQNFIRARHQAFVDALQRVGEMKRDLV  194
            +LDFA   R +FIKLLVL +WSR+A DVSKLIDL  F+R ++ AF DA   +  MKR LV
Sbjct  40   LLDFAQRTRQQFIKLLVLVKWSRKAEDVSKLIDLLAFLRQQNMAFEDAADALKNMKRSLV  99

Query  195  QAQVANPDLQTALEILSKGRLESLADLGYK--SSKLLTARGALRRLHKINRIISARLALH  252
             A++ NPDL TALE+LS GR   L  L Y       LT +  L+ L  +N ++S RL LH
Sbjct  100  NARLPNPDLPTALEVLSTGRYPRLPTLIYDIIPPPPLTPKEILKTLRDLNTLLSIRLNLH  159

Query  253  DLIPHPFRTYRVHDGRVTFVVRGEFELDLSIG  284
            + IP  FR Y + DGRVTF V GEFE+DL+I 
Sbjct  160  EKIPPQFRNYTIADGRVTFTVPGEFEVDLTIA  191



Lambda      K        H        a         alpha
   0.320    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390653048


Query= TCONS_00011334

Length=782


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1001144576


Query= TCONS_00011333

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462543 pfam08638, Med14, Mediator complex subunit MED14. Sacc...  256     2e-79


>CDD:462543 pfam08638, Med14, Mediator complex subunit MED14.  Saccharomyces 
cerevisiae RGR1 mediator complex subunit affects chromatin 
structure, transcriptional regulation of diverse genes and 
sporulation, required for glucose repression, HO repression, 
RME1 repression and sporulation. This subunit is also found 
in higher eukaryotes and Med14 is the agreed unified nomenclature 
for this subunit. Med14 is found in the tail region 
of Mediator.
Length=192

 Score = 256 bits (656),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 101/212 (48%), Positives = 127/212 (60%), Gaps = 23/212 (11%)

Query  75   FFPFSTLVNRSVQQCWNELSDLITELAAIHVSPHSSVPLLPVNGKSPGNQSPENVQKKLR  134
            F P S LV+R VQ+ +NELS+LI  L                      N S  +V+KK R
Sbjct  1    FVPLSLLVDRLVQRSYNELSELIETLP---------------------NTSESDVEKKRR  39

Query  135  ILDFAHAKRAEFIKLLVLSQWSRRARDVSKLIDLQNFIRARHQAFVDALQRVGEMKRDLV  194
            +LDFA   R +FIKLLVL +WSR+A DVSKLIDL  F+R ++ AF DA   +  MKR LV
Sbjct  40   LLDFAQRTRQQFIKLLVLVKWSRKAEDVSKLIDLLAFLRQQNMAFEDAADALKNMKRSLV  99

Query  195  QAQVANPDLQTALEILSKGRLESLADLGYK--SSKLLTARGALRRLHKINRIISARLALH  252
             A++ NPDL TALE+LS GR   L  L Y       LT +  L+ L  +N ++S RL LH
Sbjct  100  NARLPNPDLPTALEVLSTGRYPRLPTLIYDIIPPPPLTPKEILKTLRDLNTLLSIRLNLH  159

Query  253  DLIPHPFRTYRVHDGRVTFVVRGEFELDLSIG  284
            + IP  FR Y + DGRVTF V GEFE+DL+I 
Sbjct  160  EKIPPQFRNYTIADGRVTFTVPGEFEVDLTIA  191



Lambda      K        H        a         alpha
   0.320    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390653048


Query= TCONS_00017653

Length=782


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 1001144576


Query= TCONS_00017655

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462543 pfam08638, Med14, Mediator complex subunit MED14. Sacc...  256     2e-79


>CDD:462543 pfam08638, Med14, Mediator complex subunit MED14.  Saccharomyces 
cerevisiae RGR1 mediator complex subunit affects chromatin 
structure, transcriptional regulation of diverse genes and 
sporulation, required for glucose repression, HO repression, 
RME1 repression and sporulation. This subunit is also found 
in higher eukaryotes and Med14 is the agreed unified nomenclature 
for this subunit. Med14 is found in the tail region 
of Mediator.
Length=192

 Score = 256 bits (656),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 101/212 (48%), Positives = 127/212 (60%), Gaps = 23/212 (11%)

Query  75   FFPFSTLVNRSVQQCWNELSDLITELAAIHVSPHSSVPLLPVNGKSPGNQSPENVQKKLR  134
            F P S LV+R VQ+ +NELS+LI  L                      N S  +V+KK R
Sbjct  1    FVPLSLLVDRLVQRSYNELSELIETLP---------------------NTSESDVEKKRR  39

Query  135  ILDFAHAKRAEFIKLLVLSQWSRRARDVSKLIDLQNFIRARHQAFVDALQRVGEMKRDLV  194
            +LDFA   R +FIKLLVL +WSR+A DVSKLIDL  F+R ++ AF DA   +  MKR LV
Sbjct  40   LLDFAQRTRQQFIKLLVLVKWSRKAEDVSKLIDLLAFLRQQNMAFEDAADALKNMKRSLV  99

Query  195  QAQVANPDLQTALEILSKGRLESLADLGYK--SSKLLTARGALRRLHKINRIISARLALH  252
             A++ NPDL TALE+LS GR   L  L Y       LT +  L+ L  +N ++S RL LH
Sbjct  100  NARLPNPDLPTALEVLSTGRYPRLPTLIYDIIPPPPLTPKEILKTLRDLNTLLSIRLNLH  159

Query  253  DLIPHPFRTYRVHDGRVTFVVRGEFELDLSIG  284
            + IP  FR Y + DGRVTF V GEFE+DL+I 
Sbjct  160  EKIPPQFRNYTIADGRVTFTVPGEFEVDLTIA  191



Lambda      K        H        a         alpha
   0.320    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390653048


Query= TCONS_00017654

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462543 pfam08638, Med14, Mediator complex subunit MED14. Sacc...  256     2e-79


>CDD:462543 pfam08638, Med14, Mediator complex subunit MED14.  Saccharomyces 
cerevisiae RGR1 mediator complex subunit affects chromatin 
structure, transcriptional regulation of diverse genes and 
sporulation, required for glucose repression, HO repression, 
RME1 repression and sporulation. This subunit is also found 
in higher eukaryotes and Med14 is the agreed unified nomenclature 
for this subunit. Med14 is found in the tail region 
of Mediator.
Length=192

 Score = 256 bits (656),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 101/212 (48%), Positives = 127/212 (60%), Gaps = 23/212 (11%)

Query  75   FFPFSTLVNRSVQQCWNELSDLITELAAIHVSPHSSVPLLPVNGKSPGNQSPENVQKKLR  134
            F P S LV+R VQ+ +NELS+LI  L                      N S  +V+KK R
Sbjct  1    FVPLSLLVDRLVQRSYNELSELIETLP---------------------NTSESDVEKKRR  39

Query  135  ILDFAHAKRAEFIKLLVLSQWSRRARDVSKLIDLQNFIRARHQAFVDALQRVGEMKRDLV  194
            +LDFA   R +FIKLLVL +WSR+A DVSKLIDL  F+R ++ AF DA   +  MKR LV
Sbjct  40   LLDFAQRTRQQFIKLLVLVKWSRKAEDVSKLIDLLAFLRQQNMAFEDAADALKNMKRSLV  99

Query  195  QAQVANPDLQTALEILSKGRLESLADLGYK--SSKLLTARGALRRLHKINRIISARLALH  252
             A++ NPDL TALE+LS GR   L  L Y       LT +  L+ L  +N ++S RL LH
Sbjct  100  NARLPNPDLPTALEVLSTGRYPRLPTLIYDIIPPPPLTPKEILKTLRDLNTLLSIRLNLH  159

Query  253  DLIPHPFRTYRVHDGRVTFVVRGEFELDLSIG  284
            + IP  FR Y + DGRVTF V GEFE+DL+I 
Sbjct  160  EKIPPQFRNYTIADGRVTFTVPGEFEVDLTIA  191



Lambda      K        H        a         alpha
   0.320    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390653048


Query= TCONS_00017656

Length=706
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465114 pfam16420, ATG7_N, Ubiquitin-like modifier-activating ...  400     5e-136
CDD:459987 pfam00899, ThiF, ThiF family. This domain is found in ...  164     7e-47 


>CDD:465114 pfam16420, ATG7_N, Ubiquitin-like modifier-activating enzyme 
ATG7 N-terminus.  This is the N-terminal domain of Ubiquitin-like 
modifier-activating enzyme ATG7. In Arabidopsis this domain 
binds the E2 enzymes ATG10 and ATG3.
Length=308

 Score = 400 bits (1030),  Expect = 5e-136, Method: Composition-based stats.
 Identities = 157/364 (43%), Positives = 207/364 (57%), Gaps = 69/364 (19%)

Query  1    MQYAPFASDIELPFYTALATLKIDRDKLDDSARKVLGLYEVRSTDAPKNSCRMQIHGNAL  60
            +Q+APF+S I+  F+  L++LK+D  KLDDS R +LGLYE R  DAP  SCR+Q+ G++ 
Sbjct  1    LQFAPFSSFIDPSFWHELSSLKLDVLKLDDSPRPILGLYEPR--DAPGLSCRLQLDGSSF  58

Query  61   --TSDE-------AEGSIKNFNTCEEYRDIDKPQMLQQAGQTILDAIEDGSIYLCPSKLS  111
              TSD        AEG++KNFNT EE++++DK  +L  AG+ I DAI  G+    PS LS
Sbjct  59   NDTSDAVPPGSCRAEGTLKNFNTIEEFKNLDKQALLDDAGKKIWDAILSGTALEDPSLLS  118

Query  112  YFMILSFADLKKYKFHYWFAFPALHSTPSWTPVPYSEEIVGDTPVEPINRSPFKALSTLE  171
             F++LSFADLKKYKF+YWFAFPALHS P+W                       + LS+ E
Sbjct  119  RFLLLSFADLKKYKFYYWFAFPALHSDPAWVLSWK---------------PASEELSSEE  163

Query  172  SSTLVEAVQTWSRSVEACQRGFFLARKYPKLDGRPEHDSKEMTKIADGTLVASSQQSAGH  231
            + +LV+AVQTW  SV+A Q  FFL +K                             S G 
Sbjct  164  TESLVDAVQTWRYSVDARQH-FFLVKK-----------------------------SRGS  193

Query  232  NWEIASLASYESGFFDGVPFEDSFICFADPSNYDDAPGWMLRNLLFLIKQRWGLRRAQIL  291
            +WEIASL+ YE+ F      ED +  FADPS   + PGW LRNLL L++ RW L++ Q+L
Sbjct  194  DWEIASLSEYENFF---ADVEDVYFGFADPSTLPENPGWPLRNLLALLRARWPLKKVQVL  250

Query  292  RYRDTRCENGR---SMVVTMECKGQLVSRPGSFPETVSGAPKVTGWERNSAGKLSGRLVD  348
             YRD      R   S+V+T++        P    E  S  PK  GWERN+ GKL  R+VD
Sbjct  251  CYRDNSRSGRRDERSLVLTLKL-------PEPSDENTSELPKAVGWERNANGKLGPRVVD  303

Query  349  LTEY  352
            L+ Y
Sbjct  304  LSSY  307


>CDD:459987 pfam00899, ThiF, ThiF family.  This domain is found in ubiquitin 
activating E1 family and members of the bacterial ThiF/MoeB/HesA 
family. It is repeated in Ubiquitin-activating enzyme 
E1.
Length=238

 Score = 164 bits (417),  Expect = 7e-47, Method: Composition-based stats.
 Identities = 71/238 (30%), Positives = 93/238 (39%), Gaps = 36/238 (15%)

Query  365  LNLKLMKWRISPDLDLEKIKRTRCLLLGAGTLGSYVARNLMAWGVTKITFVDNGNVSFSN  424
             + +L    I  D   EK++ +R L++GAG LGS  A+ L   GV KIT VD   V  SN
Sbjct  1    YSRQLALPLIGED-GQEKLRNSRVLIVGAGGLGSEAAKYLARAGVGKITLVDFDTVELSN  59

Query  425  PVRQSLFNFKDCLEGGARKATRAAQALSEIYPGVETTGHVLSVPMAGHPITDTEKTRKEF  484
              RQ LF   D    G  KA  AA+ L EI P VE   +          +T         
Sbjct  60   LNRQFLFREADI---GKPKAEVAAERLREINPDVEVEAYTE-------RLTPEN------  103

Query  485  GILKALVDDHDVIFLLMDTRESRWLPTVIGKAAGKIVINAA-LGFDSFVVMRHGVRNDAD  543
               + L+   D++    D   +R+L        GK +I A  LGF   V +         
Sbjct  104  --AEELIKSFDIVVDATDNFAARYLVNDACVKLGKPLIEAGVLGFKGQVTVVI-------  154

Query  544  PTSELGCYFCNDVVAPMNSVRDQTLDQQCTVT---RPGVATIASALAVELLISLLQHP  598
               +  CY C     P        L   CTV     P  A +A   A+E L  LL   
Sbjct  155  -PGKTPCYRCLFPEDP-----PPKLVPSCTVAGVLGPTTAVVAGLQALEALKLLLGKG  206



Lambda      K        H        a         alpha
   0.318    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 904046270


Query= TCONS_00011337

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465114 pfam16420, ATG7_N, Ubiquitin-like modifier-activating ...  415     7e-142
CDD:459987 pfam00899, ThiF, ThiF family. This domain is found in ...  164     8e-47 


>CDD:465114 pfam16420, ATG7_N, Ubiquitin-like modifier-activating enzyme 
ATG7 N-terminus.  This is the N-terminal domain of Ubiquitin-like 
modifier-activating enzyme ATG7. In Arabidopsis this domain 
binds the E2 enzymes ATG10 and ATG3.
Length=308

 Score = 415 bits (1070),  Expect = 7e-142, Method: Composition-based stats.
 Identities = 161/364 (44%), Positives = 211/364 (58%), Gaps = 62/364 (17%)

Query  1    MQYAPFASDIELPFYTALATLKIDRDKLDDSARKVLGLYEVRSTDAPKNSCRMQIHGNAL  60
            +Q+APF+S I+  F+  L++LK+D  KLDDS R +LGLYE R  DAP  SCR+Q+ G++ 
Sbjct  1    LQFAPFSSFIDPSFWHELSSLKLDVLKLDDSPRPILGLYEPR--DAPGLSCRLQLDGSSF  58

Query  61   --TSDDVPEGYYRAEGSIKNFNTCEEYRDIDKPQMLQQAGQTILDAIEDGSIYLCPSKLS  118
              TSD VP G  RAEG++KNFNT EE++++DK  +L  AG+ I DAI  G+    PS LS
Sbjct  59   NDTSDAVPPGSCRAEGTLKNFNTIEEFKNLDKQALLDDAGKKIWDAILSGTALEDPSLLS  118

Query  119  YFMILSFADLKKYKFHYWFAFPALHSTPSWTPVPYSEEIVGDTPVEPINRSPFKALSTLE  178
             F++LSFADLKKYKF+YWFAFPALHS P+W                       + LS+ E
Sbjct  119  RFLLLSFADLKKYKFYYWFAFPALHSDPAWVLSWK---------------PASEELSSEE  163

Query  179  SSTLVEAVQTWSRSVEACQRGFFLARKYPKLDGRPEHDSKEMTKIADGTLVASSQQSAGH  238
            + +LV+AVQTW  SV+A Q  FFL +K                             S G 
Sbjct  164  TESLVDAVQTWRYSVDARQH-FFLVKK-----------------------------SRGS  193

Query  239  NWEIASLASYESGFFDGVPFEDSFICFADPSNYDDAPGWMLRNLLFLIKQRWGLRRAQIL  298
            +WEIASL+ YE+ F      ED +  FADPS   + PGW LRNLL L++ RW L++ Q+L
Sbjct  194  DWEIASLSEYENFF---ADVEDVYFGFADPSTLPENPGWPLRNLLALLRARWPLKKVQVL  250

Query  299  RYRDTRCENGR---SMVVTMECKGQLVSRPGSFPETVSGAPKVTGWERNSAGKLSGRLVD  355
             YRD      R   S+V+T++        P    E  S  PK  GWERN+ GKL  R+VD
Sbjct  251  CYRDNSRSGRRDERSLVLTLKL-------PEPSDENTSELPKAVGWERNANGKLGPRVVD  303

Query  356  LTEY  359
            L+ Y
Sbjct  304  LSSY  307


>CDD:459987 pfam00899, ThiF, ThiF family.  This domain is found in ubiquitin 
activating E1 family and members of the bacterial ThiF/MoeB/HesA 
family. It is repeated in Ubiquitin-activating enzyme 
E1.
Length=238

 Score = 164 bits (417),  Expect = 8e-47, Method: Composition-based stats.
 Identities = 71/238 (30%), Positives = 93/238 (39%), Gaps = 36/238 (15%)

Query  372  LNLKLMKWRISPDLDLEKIKRTRCLLLGAGTLGSYVARNLMAWGVTKITFVDNGNVSFSN  431
             + +L    I  D   EK++ +R L++GAG LGS  A+ L   GV KIT VD   V  SN
Sbjct  1    YSRQLALPLIGED-GQEKLRNSRVLIVGAGGLGSEAAKYLARAGVGKITLVDFDTVELSN  59

Query  432  PVRQSLFNFKDCLEGGARKATRAAQALSEIYPGVETTGHVLSVPMAGHPITDTEKTRKEF  491
              RQ LF   D    G  KA  AA+ L EI P VE   +          +T         
Sbjct  60   LNRQFLFREADI---GKPKAEVAAERLREINPDVEVEAYTE-------RLTPEN------  103

Query  492  GILKALVDDHDVIFLLMDTRESRWLPTVIGKAAGKIVINAA-LGFDSFVVMRHGVRNDAD  550
               + L+   D++    D   +R+L        GK +I A  LGF   V +         
Sbjct  104  --AEELIKSFDIVVDATDNFAARYLVNDACVKLGKPLIEAGVLGFKGQVTVVI-------  154

Query  551  PTSELGCYFCNDVVAPMNSVRDQTLDQQCTVT---RPGVATIASALAVELLISLLQHP  605
               +  CY C     P        L   CTV     P  A +A   A+E L  LL   
Sbjct  155  -PGKTPCYRCLFPEDP-----PPKLVPSCTVAGVLGPTTAVVAGLQALEALKLLLGKG  206



Lambda      K        H        a         alpha
   0.319    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00011338

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465114 pfam16420, ATG7_N, Ubiquitin-like modifier-activating ...  412     3e-142
CDD:459987 pfam00899, ThiF, ThiF family. This domain is found in ...  144     3e-40 


>CDD:465114 pfam16420, ATG7_N, Ubiquitin-like modifier-activating enzyme 
ATG7 N-terminus.  This is the N-terminal domain of Ubiquitin-like 
modifier-activating enzyme ATG7. In Arabidopsis this domain 
binds the E2 enzymes ATG10 and ATG3.
Length=308

 Score = 412 bits (1061),  Expect = 3e-142, Method: Composition-based stats.
 Identities = 161/364 (44%), Positives = 211/364 (58%), Gaps = 62/364 (17%)

Query  1    MQYAPFASDIELPFYTALATLKIDRDKLDDSARKVLGLYEVRSTDAPKNSCRMQIHGNAL  60
            +Q+APF+S I+  F+  L++LK+D  KLDDS R +LGLYE R  DAP  SCR+Q+ G++ 
Sbjct  1    LQFAPFSSFIDPSFWHELSSLKLDVLKLDDSPRPILGLYEPR--DAPGLSCRLQLDGSSF  58

Query  61   --TSDDVPEGYYRAEGSIKNFNTCEEYRDIDKPQMLQQAGQTILDAIEDGSIYLCPSKLS  118
              TSD VP G  RAEG++KNFNT EE++++DK  +L  AG+ I DAI  G+    PS LS
Sbjct  59   NDTSDAVPPGSCRAEGTLKNFNTIEEFKNLDKQALLDDAGKKIWDAILSGTALEDPSLLS  118

Query  119  YFMILSFADLKKYKFHYWFAFPALHSTPSWTPVPYSEEIVGDTPVEPINRSPFKALSTLE  178
             F++LSFADLKKYKF+YWFAFPALHS P+W                       + LS+ E
Sbjct  119  RFLLLSFADLKKYKFYYWFAFPALHSDPAWVLSWK---------------PASEELSSEE  163

Query  179  SSTLVEAVQTWSRSVEACQRGFFLARKYPKLDGRPEHDSKEMTKIADGTLVASSQQSAGH  238
            + +LV+AVQTW  SV+A Q  FFL +K                             S G 
Sbjct  164  TESLVDAVQTWRYSVDARQH-FFLVKK-----------------------------SRGS  193

Query  239  NWEIASLASYESGFFDGVPFEDSFICFADPSNYDDAPGWMLRNLLFLIKQRWGLRRAQIL  298
            +WEIASL+ YE+ F      ED +  FADPS   + PGW LRNLL L++ RW L++ Q+L
Sbjct  194  DWEIASLSEYENFF---ADVEDVYFGFADPSTLPENPGWPLRNLLALLRARWPLKKVQVL  250

Query  299  RYRDTRCENGR---SMVVTMECKGQLVSRPGSFPETVSGAPKVTGWERNSAGKLSGRLVD  355
             YRD      R   S+V+T++        P    E  S  PK  GWERN+ GKL  R+VD
Sbjct  251  CYRDNSRSGRRDERSLVLTLKL-------PEPSDENTSELPKAVGWERNANGKLGPRVVD  303

Query  356  LTEY  359
            L+ Y
Sbjct  304  LSSY  307


>CDD:459987 pfam00899, ThiF, ThiF family.  This domain is found in ubiquitin 
activating E1 family and members of the bacterial ThiF/MoeB/HesA 
family. It is repeated in Ubiquitin-activating enzyme 
E1.
Length=238

 Score = 144 bits (366),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 63/228 (28%), Positives = 87/228 (38%), Gaps = 48/228 (21%)

Query  372  LNLKLMKWRISPDLDLEKIKRTRCLLLGAGTLGSYVARNLMAWGVTKITFVDNGNVSFSN  431
             + +L    I  D   EK++ +R L++GAG LGS  A+ L   GV KIT VD   V  SN
Sbjct  1    YSRQLALPLIGED-GQEKLRNSRVLIVGAGGLGSEAAKYLARAGVGKITLVDFDTVELSN  59

Query  432  PVRQSLFNFKDCLEGGARKATRAAQALSEIYPGVETTGHVLSVPMAGHPITDTEKTRKEF  491
              RQ LF   D    G  KA  AA+ L EI P VE   +          +T         
Sbjct  60   LNRQFLFREADI---GKPKAEVAAERLREINPDVEVEAYTE-------RLTPEN------  103

Query  492  GILKALVDDHDVIFLLMDTRESRWLPTVIGKAAGKIVINAA-LGFDSFVVMRHGVRNDAD  550
               + L+   D++    D   +R+L        GK +I A  LGF   V +         
Sbjct  104  --AEELIKSFDIVVDATDNFAARYLVNDACVKLGKPLIEAGVLGFKGQVTVVI-------  154

Query  551  PTSELGCYFCND----------------VVAPMNVSHHSQVSCLYATD  582
               +  CY C                  V+ P      + V+ L A +
Sbjct  155  -PGKTPCYRCLFPEDPPPKLVPSCTVAGVLGPTT----AVVAGLQALE  197



Lambda      K        H        a         alpha
   0.320    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 736753004


Query= TCONS_00011339

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465114 pfam16420, ATG7_N, Ubiquitin-like modifier-activating ...  415     7e-142
CDD:459987 pfam00899, ThiF, ThiF family. This domain is found in ...  164     8e-47 


>CDD:465114 pfam16420, ATG7_N, Ubiquitin-like modifier-activating enzyme 
ATG7 N-terminus.  This is the N-terminal domain of Ubiquitin-like 
modifier-activating enzyme ATG7. In Arabidopsis this domain 
binds the E2 enzymes ATG10 and ATG3.
Length=308

 Score = 415 bits (1070),  Expect = 7e-142, Method: Composition-based stats.
 Identities = 161/364 (44%), Positives = 211/364 (58%), Gaps = 62/364 (17%)

Query  1    MQYAPFASDIELPFYTALATLKIDRDKLDDSARKVLGLYEVRSTDAPKNSCRMQIHGNAL  60
            +Q+APF+S I+  F+  L++LK+D  KLDDS R +LGLYE R  DAP  SCR+Q+ G++ 
Sbjct  1    LQFAPFSSFIDPSFWHELSSLKLDVLKLDDSPRPILGLYEPR--DAPGLSCRLQLDGSSF  58

Query  61   --TSDDVPEGYYRAEGSIKNFNTCEEYRDIDKPQMLQQAGQTILDAIEDGSIYLCPSKLS  118
              TSD VP G  RAEG++KNFNT EE++++DK  +L  AG+ I DAI  G+    PS LS
Sbjct  59   NDTSDAVPPGSCRAEGTLKNFNTIEEFKNLDKQALLDDAGKKIWDAILSGTALEDPSLLS  118

Query  119  YFMILSFADLKKYKFHYWFAFPALHSTPSWTPVPYSEEIVGDTPVEPINRSPFKALSTLE  178
             F++LSFADLKKYKF+YWFAFPALHS P+W                       + LS+ E
Sbjct  119  RFLLLSFADLKKYKFYYWFAFPALHSDPAWVLSWK---------------PASEELSSEE  163

Query  179  SSTLVEAVQTWSRSVEACQRGFFLARKYPKLDGRPEHDSKEMTKIADGTLVASSQQSAGH  238
            + +LV+AVQTW  SV+A Q  FFL +K                             S G 
Sbjct  164  TESLVDAVQTWRYSVDARQH-FFLVKK-----------------------------SRGS  193

Query  239  NWEIASLASYESGFFDGVPFEDSFICFADPSNYDDAPGWMLRNLLFLIKQRWGLRRAQIL  298
            +WEIASL+ YE+ F      ED +  FADPS   + PGW LRNLL L++ RW L++ Q+L
Sbjct  194  DWEIASLSEYENFF---ADVEDVYFGFADPSTLPENPGWPLRNLLALLRARWPLKKVQVL  250

Query  299  RYRDTRCENGR---SMVVTMECKGQLVSRPGSFPETVSGAPKVTGWERNSAGKLSGRLVD  355
             YRD      R   S+V+T++        P    E  S  PK  GWERN+ GKL  R+VD
Sbjct  251  CYRDNSRSGRRDERSLVLTLKL-------PEPSDENTSELPKAVGWERNANGKLGPRVVD  303

Query  356  LTEY  359
            L+ Y
Sbjct  304  LSSY  307


>CDD:459987 pfam00899, ThiF, ThiF family.  This domain is found in ubiquitin 
activating E1 family and members of the bacterial ThiF/MoeB/HesA 
family. It is repeated in Ubiquitin-activating enzyme 
E1.
Length=238

 Score = 164 bits (417),  Expect = 8e-47, Method: Composition-based stats.
 Identities = 71/238 (30%), Positives = 93/238 (39%), Gaps = 36/238 (15%)

Query  372  LNLKLMKWRISPDLDLEKIKRTRCLLLGAGTLGSYVARNLMAWGVTKITFVDNGNVSFSN  431
             + +L    I  D   EK++ +R L++GAG LGS  A+ L   GV KIT VD   V  SN
Sbjct  1    YSRQLALPLIGED-GQEKLRNSRVLIVGAGGLGSEAAKYLARAGVGKITLVDFDTVELSN  59

Query  432  PVRQSLFNFKDCLEGGARKATRAAQALSEIYPGVETTGHVLSVPMAGHPITDTEKTRKEF  491
              RQ LF   D    G  KA  AA+ L EI P VE   +          +T         
Sbjct  60   LNRQFLFREADI---GKPKAEVAAERLREINPDVEVEAYTE-------RLTPEN------  103

Query  492  GILKALVDDHDVIFLLMDTRESRWLPTVIGKAAGKIVINAA-LGFDSFVVMRHGVRNDAD  550
               + L+   D++    D   +R+L        GK +I A  LGF   V +         
Sbjct  104  --AEELIKSFDIVVDATDNFAARYLVNDACVKLGKPLIEAGVLGFKGQVTVVI-------  154

Query  551  PTSELGCYFCNDVVAPMNSVRDQTLDQQCTVT---RPGVATIASALAVELLISLLQHP  605
               +  CY C     P        L   CTV     P  A +A   A+E L  LL   
Sbjct  155  -PGKTPCYRCLFPEDP-----PPKLVPSCTVAGVLGPTTAVVAGLQALEALKLLLGKG  206



Lambda      K        H        a         alpha
   0.319    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00017657

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465114 pfam16420, ATG7_N, Ubiquitin-like modifier-activating ...  412     3e-142
CDD:459987 pfam00899, ThiF, ThiF family. This domain is found in ...  144     3e-40 


>CDD:465114 pfam16420, ATG7_N, Ubiquitin-like modifier-activating enzyme 
ATG7 N-terminus.  This is the N-terminal domain of Ubiquitin-like 
modifier-activating enzyme ATG7. In Arabidopsis this domain 
binds the E2 enzymes ATG10 and ATG3.
Length=308

 Score = 412 bits (1061),  Expect = 3e-142, Method: Composition-based stats.
 Identities = 161/364 (44%), Positives = 211/364 (58%), Gaps = 62/364 (17%)

Query  1    MQYAPFASDIELPFYTALATLKIDRDKLDDSARKVLGLYEVRSTDAPKNSCRMQIHGNAL  60
            +Q+APF+S I+  F+  L++LK+D  KLDDS R +LGLYE R  DAP  SCR+Q+ G++ 
Sbjct  1    LQFAPFSSFIDPSFWHELSSLKLDVLKLDDSPRPILGLYEPR--DAPGLSCRLQLDGSSF  58

Query  61   --TSDDVPEGYYRAEGSIKNFNTCEEYRDIDKPQMLQQAGQTILDAIEDGSIYLCPSKLS  118
              TSD VP G  RAEG++KNFNT EE++++DK  +L  AG+ I DAI  G+    PS LS
Sbjct  59   NDTSDAVPPGSCRAEGTLKNFNTIEEFKNLDKQALLDDAGKKIWDAILSGTALEDPSLLS  118

Query  119  YFMILSFADLKKYKFHYWFAFPALHSTPSWTPVPYSEEIVGDTPVEPINRSPFKALSTLE  178
             F++LSFADLKKYKF+YWFAFPALHS P+W                       + LS+ E
Sbjct  119  RFLLLSFADLKKYKFYYWFAFPALHSDPAWVLSWK---------------PASEELSSEE  163

Query  179  SSTLVEAVQTWSRSVEACQRGFFLARKYPKLDGRPEHDSKEMTKIADGTLVASSQQSAGH  238
            + +LV+AVQTW  SV+A Q  FFL +K                             S G 
Sbjct  164  TESLVDAVQTWRYSVDARQH-FFLVKK-----------------------------SRGS  193

Query  239  NWEIASLASYESGFFDGVPFEDSFICFADPSNYDDAPGWMLRNLLFLIKQRWGLRRAQIL  298
            +WEIASL+ YE+ F      ED +  FADPS   + PGW LRNLL L++ RW L++ Q+L
Sbjct  194  DWEIASLSEYENFF---ADVEDVYFGFADPSTLPENPGWPLRNLLALLRARWPLKKVQVL  250

Query  299  RYRDTRCENGR---SMVVTMECKGQLVSRPGSFPETVSGAPKVTGWERNSAGKLSGRLVD  355
             YRD      R   S+V+T++        P    E  S  PK  GWERN+ GKL  R+VD
Sbjct  251  CYRDNSRSGRRDERSLVLTLKL-------PEPSDENTSELPKAVGWERNANGKLGPRVVD  303

Query  356  LTEY  359
            L+ Y
Sbjct  304  LSSY  307


>CDD:459987 pfam00899, ThiF, ThiF family.  This domain is found in ubiquitin 
activating E1 family and members of the bacterial ThiF/MoeB/HesA 
family. It is repeated in Ubiquitin-activating enzyme 
E1.
Length=238

 Score = 144 bits (366),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 63/228 (28%), Positives = 87/228 (38%), Gaps = 48/228 (21%)

Query  372  LNLKLMKWRISPDLDLEKIKRTRCLLLGAGTLGSYVARNLMAWGVTKITFVDNGNVSFSN  431
             + +L    I  D   EK++ +R L++GAG LGS  A+ L   GV KIT VD   V  SN
Sbjct  1    YSRQLALPLIGED-GQEKLRNSRVLIVGAGGLGSEAAKYLARAGVGKITLVDFDTVELSN  59

Query  432  PVRQSLFNFKDCLEGGARKATRAAQALSEIYPGVETTGHVLSVPMAGHPITDTEKTRKEF  491
              RQ LF   D    G  KA  AA+ L EI P VE   +          +T         
Sbjct  60   LNRQFLFREADI---GKPKAEVAAERLREINPDVEVEAYTE-------RLTPEN------  103

Query  492  GILKALVDDHDVIFLLMDTRESRWLPTVIGKAAGKIVINAA-LGFDSFVVMRHGVRNDAD  550
               + L+   D++    D   +R+L        GK +I A  LGF   V +         
Sbjct  104  --AEELIKSFDIVVDATDNFAARYLVNDACVKLGKPLIEAGVLGFKGQVTVVI-------  154

Query  551  PTSELGCYFCND----------------VVAPMNVSHHSQVSCLYATD  582
               +  CY C                  V+ P      + V+ L A +
Sbjct  155  -PGKTPCYRCLFPEDPPPKLVPSCTVAGVLGPTT----AVVAGLQALE  197



Lambda      K        H        a         alpha
   0.320    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 736753004


Query= TCONS_00017658

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465114 pfam16420, ATG7_N, Ubiquitin-like modifier-activating ...  415     7e-142
CDD:459987 pfam00899, ThiF, ThiF family. This domain is found in ...  164     8e-47 


>CDD:465114 pfam16420, ATG7_N, Ubiquitin-like modifier-activating enzyme 
ATG7 N-terminus.  This is the N-terminal domain of Ubiquitin-like 
modifier-activating enzyme ATG7. In Arabidopsis this domain 
binds the E2 enzymes ATG10 and ATG3.
Length=308

 Score = 415 bits (1070),  Expect = 7e-142, Method: Composition-based stats.
 Identities = 161/364 (44%), Positives = 211/364 (58%), Gaps = 62/364 (17%)

Query  1    MQYAPFASDIELPFYTALATLKIDRDKLDDSARKVLGLYEVRSTDAPKNSCRMQIHGNAL  60
            +Q+APF+S I+  F+  L++LK+D  KLDDS R +LGLYE R  DAP  SCR+Q+ G++ 
Sbjct  1    LQFAPFSSFIDPSFWHELSSLKLDVLKLDDSPRPILGLYEPR--DAPGLSCRLQLDGSSF  58

Query  61   --TSDDVPEGYYRAEGSIKNFNTCEEYRDIDKPQMLQQAGQTILDAIEDGSIYLCPSKLS  118
              TSD VP G  RAEG++KNFNT EE++++DK  +L  AG+ I DAI  G+    PS LS
Sbjct  59   NDTSDAVPPGSCRAEGTLKNFNTIEEFKNLDKQALLDDAGKKIWDAILSGTALEDPSLLS  118

Query  119  YFMILSFADLKKYKFHYWFAFPALHSTPSWTPVPYSEEIVGDTPVEPINRSPFKALSTLE  178
             F++LSFADLKKYKF+YWFAFPALHS P+W                       + LS+ E
Sbjct  119  RFLLLSFADLKKYKFYYWFAFPALHSDPAWVLSWK---------------PASEELSSEE  163

Query  179  SSTLVEAVQTWSRSVEACQRGFFLARKYPKLDGRPEHDSKEMTKIADGTLVASSQQSAGH  238
            + +LV+AVQTW  SV+A Q  FFL +K                             S G 
Sbjct  164  TESLVDAVQTWRYSVDARQH-FFLVKK-----------------------------SRGS  193

Query  239  NWEIASLASYESGFFDGVPFEDSFICFADPSNYDDAPGWMLRNLLFLIKQRWGLRRAQIL  298
            +WEIASL+ YE+ F      ED +  FADPS   + PGW LRNLL L++ RW L++ Q+L
Sbjct  194  DWEIASLSEYENFF---ADVEDVYFGFADPSTLPENPGWPLRNLLALLRARWPLKKVQVL  250

Query  299  RYRDTRCENGR---SMVVTMECKGQLVSRPGSFPETVSGAPKVTGWERNSAGKLSGRLVD  355
             YRD      R   S+V+T++        P    E  S  PK  GWERN+ GKL  R+VD
Sbjct  251  CYRDNSRSGRRDERSLVLTLKL-------PEPSDENTSELPKAVGWERNANGKLGPRVVD  303

Query  356  LTEY  359
            L+ Y
Sbjct  304  LSSY  307


>CDD:459987 pfam00899, ThiF, ThiF family.  This domain is found in ubiquitin 
activating E1 family and members of the bacterial ThiF/MoeB/HesA 
family. It is repeated in Ubiquitin-activating enzyme 
E1.
Length=238

 Score = 164 bits (417),  Expect = 8e-47, Method: Composition-based stats.
 Identities = 71/238 (30%), Positives = 93/238 (39%), Gaps = 36/238 (15%)

Query  372  LNLKLMKWRISPDLDLEKIKRTRCLLLGAGTLGSYVARNLMAWGVTKITFVDNGNVSFSN  431
             + +L    I  D   EK++ +R L++GAG LGS  A+ L   GV KIT VD   V  SN
Sbjct  1    YSRQLALPLIGED-GQEKLRNSRVLIVGAGGLGSEAAKYLARAGVGKITLVDFDTVELSN  59

Query  432  PVRQSLFNFKDCLEGGARKATRAAQALSEIYPGVETTGHVLSVPMAGHPITDTEKTRKEF  491
              RQ LF   D    G  KA  AA+ L EI P VE   +          +T         
Sbjct  60   LNRQFLFREADI---GKPKAEVAAERLREINPDVEVEAYTE-------RLTPEN------  103

Query  492  GILKALVDDHDVIFLLMDTRESRWLPTVIGKAAGKIVINAA-LGFDSFVVMRHGVRNDAD  550
               + L+   D++    D   +R+L        GK +I A  LGF   V +         
Sbjct  104  --AEELIKSFDIVVDATDNFAARYLVNDACVKLGKPLIEAGVLGFKGQVTVVI-------  154

Query  551  PTSELGCYFCNDVVAPMNSVRDQTLDQQCTVT---RPGVATIASALAVELLISLLQHP  605
               +  CY C     P        L   CTV     P  A +A   A+E L  LL   
Sbjct  155  -PGKTPCYRCLFPEDP-----PPKLVPSCTVAGVLGPTTAVVAGLQALEALKLLLGKG  206



Lambda      K        H        a         alpha
   0.319    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00011340

Length=723
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465114 pfam16420, ATG7_N, Ubiquitin-like modifier-activating ...  400     1e-135
CDD:459987 pfam00899, ThiF, ThiF family. This domain is found in ...  164     9e-47 


>CDD:465114 pfam16420, ATG7_N, Ubiquitin-like modifier-activating enzyme 
ATG7 N-terminus.  This is the N-terminal domain of Ubiquitin-like 
modifier-activating enzyme ATG7. In Arabidopsis this domain 
binds the E2 enzymes ATG10 and ATG3.
Length=308

 Score = 400 bits (1029),  Expect = 1e-135, Method: Composition-based stats.
 Identities = 157/364 (43%), Positives = 207/364 (57%), Gaps = 69/364 (19%)

Query  1    MQYAPFASDIELPFYTALATLKIDRDKLDDSARKVLGLYEVRSTDAPKNSCRMQIHGNAL  60
            +Q+APF+S I+  F+  L++LK+D  KLDDS R +LGLYE R  DAP  SCR+Q+ G++ 
Sbjct  1    LQFAPFSSFIDPSFWHELSSLKLDVLKLDDSPRPILGLYEPR--DAPGLSCRLQLDGSSF  58

Query  61   --TSDE-------AEGSIKNFNTCEEYRDIDKPQMLQQAGQTILDAIEDGSIYLCPSKLS  111
              TSD        AEG++KNFNT EE++++DK  +L  AG+ I DAI  G+    PS LS
Sbjct  59   NDTSDAVPPGSCRAEGTLKNFNTIEEFKNLDKQALLDDAGKKIWDAILSGTALEDPSLLS  118

Query  112  YFMILSFADLKKYKFHYWFAFPALHSTPSWTPVPYSEEIVGDTPVEPINRSPFKALSTLE  171
             F++LSFADLKKYKF+YWFAFPALHS P+W                       + LS+ E
Sbjct  119  RFLLLSFADLKKYKFYYWFAFPALHSDPAWVLSWK---------------PASEELSSEE  163

Query  172  SSTLVEAVQTWSRSVEACQRGFFLARKYPKLDGRPEHDSKEMTKIADGTLVASSQQSAGH  231
            + +LV+AVQTW  SV+A Q  FFL +K                             S G 
Sbjct  164  TESLVDAVQTWRYSVDARQH-FFLVKK-----------------------------SRGS  193

Query  232  NWEIASLASYESGFFDGVPFEDSFICFADPSNYDDAPGWMLRNLLFLIKQRWGLRRAQIL  291
            +WEIASL+ YE+ F      ED +  FADPS   + PGW LRNLL L++ RW L++ Q+L
Sbjct  194  DWEIASLSEYENFF---ADVEDVYFGFADPSTLPENPGWPLRNLLALLRARWPLKKVQVL  250

Query  292  RYRDTRCENGR---SMVVTMECKGQLVSRPGSFPETVSGAPKVTGWERNSAGKLSGRLVD  348
             YRD      R   S+V+T++        P    E  S  PK  GWERN+ GKL  R+VD
Sbjct  251  CYRDNSRSGRRDERSLVLTLKL-------PEPSDENTSELPKAVGWERNANGKLGPRVVD  303

Query  349  LTEY  352
            L+ Y
Sbjct  304  LSSY  307


>CDD:459987 pfam00899, ThiF, ThiF family.  This domain is found in ubiquitin 
activating E1 family and members of the bacterial ThiF/MoeB/HesA 
family. It is repeated in Ubiquitin-activating enzyme 
E1.
Length=238

 Score = 164 bits (417),  Expect = 9e-47, Method: Composition-based stats.
 Identities = 71/238 (30%), Positives = 93/238 (39%), Gaps = 36/238 (15%)

Query  365  LNLKLMKWRISPDLDLEKIKRTRCLLLGAGTLGSYVARNLMAWGVTKITFVDNGNVSFSN  424
             + +L    I  D   EK++ +R L++GAG LGS  A+ L   GV KIT VD   V  SN
Sbjct  1    YSRQLALPLIGED-GQEKLRNSRVLIVGAGGLGSEAAKYLARAGVGKITLVDFDTVELSN  59

Query  425  PVRQSLFNFKDCLEGGARKATRAAQALSEIYPGVETTGHVLSVPMAGHPITDTEKTRKEF  484
              RQ LF   D    G  KA  AA+ L EI P VE   +          +T         
Sbjct  60   LNRQFLFREADI---GKPKAEVAAERLREINPDVEVEAYTE-------RLTPEN------  103

Query  485  GILKALVDDHDVIFLLMDTRESRWLPTVIGKAAGKIVINAA-LGFDSFVVMRHGVRNDAD  543
               + L+   D++    D   +R+L        GK +I A  LGF   V +         
Sbjct  104  --AEELIKSFDIVVDATDNFAARYLVNDACVKLGKPLIEAGVLGFKGQVTVVI-------  154

Query  544  PTSELGCYFCNDVVAPMNSVRDQTLDQQCTVT---RPGVATIASALAVELLISLLQHP  598
               +  CY C     P        L   CTV     P  A +A   A+E L  LL   
Sbjct  155  -PGKTPCYRCLFPEDP-----PPKLVPSCTVAGVLGPTTAVVAGLQALEALKLLLGKG  206



Lambda      K        H        a         alpha
   0.319    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 915290608


Query= TCONS_00017659

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459987 pfam00899, ThiF, ThiF family. This domain is found in ...  143     4e-42
CDD:465114 pfam16420, ATG7_N, Ubiquitin-like modifier-activating ...  96.6    1e-23


>CDD:459987 pfam00899, ThiF, ThiF family.  This domain is found in ubiquitin 
activating E1 family and members of the bacterial ThiF/MoeB/HesA 
family. It is repeated in Ubiquitin-activating enzyme 
E1.
Length=238

 Score = 143 bits (363),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 63/228 (28%), Positives = 87/228 (38%), Gaps = 48/228 (21%)

Query  95   LNLKLMKWRISPDLDLEKIKRTRCLLLGAGTLGSYVARNLMAWGVTKITFVDNGNVSFSN  154
             + +L    I  D   EK++ +R L++GAG LGS  A+ L   GV KIT VD   V  SN
Sbjct  1    YSRQLALPLIGED-GQEKLRNSRVLIVGAGGLGSEAAKYLARAGVGKITLVDFDTVELSN  59

Query  155  PVRQSLFNFKDCLEGGARKATRAAQALSEIYPGVETTGHVLSVPMAGHPITDTEKTRKEF  214
              RQ LF   D    G  KA  AA+ L EI P VE   +          +T         
Sbjct  60   LNRQFLFREADI---GKPKAEVAAERLREINPDVEVEAYTE-------RLTPEN------  103

Query  215  GILKALVDDHDVIFLLMDTRESRWLPTVIGKAAGKIVINAA-LGFDSFVVMRHGVRNDAD  273
               + L+   D++    D   +R+L        GK +I A  LGF   V +         
Sbjct  104  --AEELIKSFDIVVDATDNFAARYLVNDACVKLGKPLIEAGVLGFKGQVTVVI-------  154

Query  274  PTSELGCYFCND----------------VVAPMNVSHHSQVSCLYATD  305
               +  CY C                  V+ P      + V+ L A +
Sbjct  155  -PGKTPCYRCLFPEDPPPKLVPSCTVAGVLGPTT----AVVAGLQALE  197


>CDD:465114 pfam16420, ATG7_N, Ubiquitin-like modifier-activating enzyme 
ATG7 N-terminus.  This is the N-terminal domain of Ubiquitin-like 
modifier-activating enzyme ATG7. In Arabidopsis this domain 
binds the E2 enzymes ATG10 and ATG3.
Length=308

 Score = 96.6 bits (241),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 10/85 (12%)

Query  1    MLRNLLFLIKQRWGLRRAQILRYRDTRCENGR---SMVVTMECKGQLVSRPGSFPETVSG  57
             LRNLL L++ RW L++ Q+L YRD      R   S+V+T++        P    E  S 
Sbjct  230  PLRNLLALLRARWPLKKVQVLCYRDNSRSGRRDERSLVLTLKL-------PEPSDENTSE  282

Query  58   APKVTGWERNSAGKLSGRLVDLTEY  82
             PK  GWERN+ GKL  R+VDL+ Y
Sbjct  283  LPKAVGWERNANGKLGPRVVDLSSY  307



Lambda      K        H        a         alpha
   0.322    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00017660

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461420 pfam04756, OST3_OST6, OST3 / OST6 family, transporter ...  172     3e-54


>CDD:461420 pfam04756, OST3_OST6, OST3 / OST6 family, transporter family. 
 The proteins in this family are part of a complex of eight 
ER proteins that transfers core oligosaccharide from dolichol 
carrier to Asn-X-Ser/Thr motifs. This family includes both 
OST3 and OST6, each of which contains four predicted transmembrane 
helices. Disruption of OST3 and OST6 leads to a defect 
in the assembly of the complex. Hence, the function of these 
genes seems to be essential for recruiting a fully active 
complex necessary for efficient N-glycosylation. These proteins 
are also thought to be novel Mg2+ transporters.
Length=294

 Score = 172 bits (437),  Expect = 3e-54, Method: Composition-based stats.
 Identities = 73/145 (50%), Positives = 87/145 (60%), Gaps = 7/145 (5%)

Query  37   PIGLTDVTYHDLTSKPRDFHVAVLLTATDARYGCALCREFQSEWDLIARSWNKGSKSDDL  96
             I L D  Y  L S PRD+ V VLLTA D R+GC LCREFQ E++L+A+SW K  K+   
Sbjct  13   VIKLNDSNYKRLLSGPRDYSVVVLLTALDPRFGCQLCREFQPEFELVAKSWFKDHKAGSS  72

Query  97   KLLLATLDFSNGKETFQKLMLQTAPVLLLFPPTVGPFAKVDNA-----PVSPLSADQLYT  151
            KL  ATLDF +GK+ FQ L LQTAP LLLFPPT GP                 SA+QL  
Sbjct  73   KLFFATLDFDDGKDVFQSLGLQTAPHLLLFPPTGGPKISDSEPDQYDFTRGGFSAEQLAA  132

Query  152  WISRHLPEGAKPPLIRPINYMRIIS  176
            ++SRH       P+ RPINY +II 
Sbjct  133  FLSRHTGV--PIPIKRPINYSKIII  155



Lambda      K        H        a         alpha
   0.320    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00011343

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461420 pfam04756, OST3_OST6, OST3 / OST6 family, transporter ...  380     7e-134


>CDD:461420 pfam04756, OST3_OST6, OST3 / OST6 family, transporter family. 
 The proteins in this family are part of a complex of eight 
ER proteins that transfers core oligosaccharide from dolichol 
carrier to Asn-X-Ser/Thr motifs. This family includes both 
OST3 and OST6, each of which contains four predicted transmembrane 
helices. Disruption of OST3 and OST6 leads to a defect 
in the assembly of the complex. Hence, the function of these 
genes seems to be essential for recruiting a fully active 
complex necessary for efficient N-glycosylation. These proteins 
are also thought to be novel Mg2+ transporters.
Length=294

 Score = 380 bits (978),  Expect = 7e-134, Method: Composition-based stats.
 Identities = 167/285 (59%), Positives = 205/285 (72%), Gaps = 4/285 (1%)

Query  37   PIGLTDVTYHDLTSKPRDFHVAVLLTATDARYGCALCREFQSEWDLIARSWNKGSKSDDL  96
             I L D  Y  L S PRD+ V VLLTA D R+GC LCREFQ E++L+A+SW K  K+   
Sbjct  13   VIKLNDSNYKRLLSGPRDYSVVVLLTALDPRFGCQLCREFQPEFELVAKSWFKDHKAGSS  72

Query  97   KLLLATLDFSNGKETFQKLMLQTAPVLLLFPPTVGPFAKVDNAPVRFDFT-GPLSADQLY  155
            KL  ATLDF +GK+ FQ L LQTAP LLLFPPT GP    D+ P ++DFT G  SA+QL 
Sbjct  73   KLFFATLDFDDGKDVFQSLGLQTAPHLLLFPPTGGP-KISDSEPDQYDFTRGGFSAEQLA  131

Query  156  TWISRHLPEGAKPPLIRPINYMRIISAITLLMGVITLFTVLSPYALPIIRNRNLWAGFSL  215
             ++SRH       P+ RPINY +II    +++GV+TL     PY LPI++NRNLWA  SL
Sbjct  132  AFLSRHTGV--PIPIKRPINYSKIIITFIIVLGVVTLLKKARPYLLPILQNRNLWAALSL  189

Query  216  IAILLFTSGHMFNHIRKVPYVVGDGKGGISYFAGGFSNQFGMETQIVAAIYAVLSFAAIA  275
            I ILLFTSG+MFNHIR VPYV  DGKGGISYFAGG  NQFG+ETQIVAA+Y +L+   I 
Sbjct  190  IFILLFTSGYMFNHIRGVPYVARDGKGGISYFAGGSQNQFGIETQIVAALYGLLALLVIL  249

Query  276  LSMKVPRMGDKKAQQLAVVIWAGVLLCMYSFLLNVFKTKNGGYPF  320
            L++KVPR+ D K Q++AV++WAGVL   +SFLL+VF+ KN GYPF
Sbjct  250  LTIKVPRIKDPKVQRVAVIVWAGVLFLFFSFLLSVFRIKNPGYPF  294



Lambda      K        H        a         alpha
   0.325    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 379043084


Query= TCONS_00011342

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461420 pfam04756, OST3_OST6, OST3 / OST6 family, transporter ...  380     7e-134


>CDD:461420 pfam04756, OST3_OST6, OST3 / OST6 family, transporter family. 
 The proteins in this family are part of a complex of eight 
ER proteins that transfers core oligosaccharide from dolichol 
carrier to Asn-X-Ser/Thr motifs. This family includes both 
OST3 and OST6, each of which contains four predicted transmembrane 
helices. Disruption of OST3 and OST6 leads to a defect 
in the assembly of the complex. Hence, the function of these 
genes seems to be essential for recruiting a fully active 
complex necessary for efficient N-glycosylation. These proteins 
are also thought to be novel Mg2+ transporters.
Length=294

 Score = 380 bits (978),  Expect = 7e-134, Method: Composition-based stats.
 Identities = 167/285 (59%), Positives = 205/285 (72%), Gaps = 4/285 (1%)

Query  37   PIGLTDVTYHDLTSKPRDFHVAVLLTATDARYGCALCREFQSEWDLIARSWNKGSKSDDL  96
             I L D  Y  L S PRD+ V VLLTA D R+GC LCREFQ E++L+A+SW K  K+   
Sbjct  13   VIKLNDSNYKRLLSGPRDYSVVVLLTALDPRFGCQLCREFQPEFELVAKSWFKDHKAGSS  72

Query  97   KLLLATLDFSNGKETFQKLMLQTAPVLLLFPPTVGPFAKVDNAPVRFDFT-GPLSADQLY  155
            KL  ATLDF +GK+ FQ L LQTAP LLLFPPT GP    D+ P ++DFT G  SA+QL 
Sbjct  73   KLFFATLDFDDGKDVFQSLGLQTAPHLLLFPPTGGP-KISDSEPDQYDFTRGGFSAEQLA  131

Query  156  TWISRHLPEGAKPPLIRPINYMRIISAITLLMGVITLFTVLSPYALPIIRNRNLWAGFSL  215
             ++SRH       P+ RPINY +II    +++GV+TL     PY LPI++NRNLWA  SL
Sbjct  132  AFLSRHTGV--PIPIKRPINYSKIIITFIIVLGVVTLLKKARPYLLPILQNRNLWAALSL  189

Query  216  IAILLFTSGHMFNHIRKVPYVVGDGKGGISYFAGGFSNQFGMETQIVAAIYAVLSFAAIA  275
            I ILLFTSG+MFNHIR VPYV  DGKGGISYFAGG  NQFG+ETQIVAA+Y +L+   I 
Sbjct  190  IFILLFTSGYMFNHIRGVPYVARDGKGGISYFAGGSQNQFGIETQIVAALYGLLALLVIL  249

Query  276  LSMKVPRMGDKKAQQLAVVIWAGVLLCMYSFLLNVFKTKNGGYPF  320
            L++KVPR+ D K Q++AV++WAGVL   +SFLL+VF+ KN GYPF
Sbjct  250  LTIKVPRIKDPKVQRVAVIVWAGVLFLFFSFLLSVFRIKNPGYPF  294



Lambda      K        H        a         alpha
   0.325    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 379043084


Query= TCONS_00011344

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461420 pfam04756, OST3_OST6, OST3 / OST6 family, transporter ...  327     2e-113


>CDD:461420 pfam04756, OST3_OST6, OST3 / OST6 family, transporter family. 
 The proteins in this family are part of a complex of eight 
ER proteins that transfers core oligosaccharide from dolichol 
carrier to Asn-X-Ser/Thr motifs. This family includes both 
OST3 and OST6, each of which contains four predicted transmembrane 
helices. Disruption of OST3 and OST6 leads to a defect 
in the assembly of the complex. Hence, the function of these 
genes seems to be essential for recruiting a fully active 
complex necessary for efficient N-glycosylation. These proteins 
are also thought to be novel Mg2+ transporters.
Length=294

 Score = 327 bits (840),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 144/248 (58%), Positives = 175/248 (71%), Gaps = 4/248 (2%)

Query  37   PIGLTDVTYHDLTSKPRDFHVAVLLTATDARYGCALCREFQSEWDLIARSWNKGSKSDDL  96
             I L D  Y  L S PRD+ V VLLTA D R+GC LCREFQ E++L+A+SW K  K+   
Sbjct  13   VIKLNDSNYKRLLSGPRDYSVVVLLTALDPRFGCQLCREFQPEFELVAKSWFKDHKAGSS  72

Query  97   KLLLATLDFSNGKETFQKLMLQTAPVLLLFPPTVGPFAKVDNAPVRFDFT-GPLSADQLY  155
            KL  ATLDF +GK+ FQ L LQTAP LLLFPPT GP    D+ P ++DFT G  SA+QL 
Sbjct  73   KLFFATLDFDDGKDVFQSLGLQTAPHLLLFPPTGGP-KISDSEPDQYDFTRGGFSAEQLA  131

Query  156  TWISRHLPEGAKPPLIRPINYMRIISAITLLMGVITLFTVLSPYALPIIRNRNLWAGFSL  215
             ++SRH       P+ RPINY +II    +++GV+TL     PY LPI++NRNLWA  SL
Sbjct  132  AFLSRHTGV--PIPIKRPINYSKIIITFIIVLGVVTLLKKARPYLLPILQNRNLWAALSL  189

Query  216  IAILLFTSGHMFNHIRKVPYVVGDGKGGISYFAGGFSNQFGMETQIVAAICAVLSFAAIA  275
            I ILLFTSG+MFNHIR VPYV  DGKGGISYFAGG  NQFG+ETQIVAA+  +L+   I 
Sbjct  190  IFILLFTSGYMFNHIRGVPYVARDGKGGISYFAGGSQNQFGIETQIVAALYGLLALLVIL  249

Query  276  LSMKVPRM  283
            L++KVPR+
Sbjct  250  LTIKVPRI  257



Lambda      K        H        a         alpha
   0.324    0.139    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00011345

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461420 pfam04756, OST3_OST6, OST3 / OST6 family, transporter ...  332     2e-115


>CDD:461420 pfam04756, OST3_OST6, OST3 / OST6 family, transporter family. 
 The proteins in this family are part of a complex of eight 
ER proteins that transfers core oligosaccharide from dolichol 
carrier to Asn-X-Ser/Thr motifs. This family includes both 
OST3 and OST6, each of which contains four predicted transmembrane 
helices. Disruption of OST3 and OST6 leads to a defect 
in the assembly of the complex. Hence, the function of these 
genes seems to be essential for recruiting a fully active 
complex necessary for efficient N-glycosylation. These proteins 
are also thought to be novel Mg2+ transporters.
Length=294

 Score = 332 bits (854),  Expect = 2e-115, Method: Composition-based stats.
 Identities = 147/284 (52%), Positives = 183/284 (64%), Gaps = 29/284 (10%)

Query  37   PIGLTDVTYHDLTSKPRDFHVAVLLTATDARYGCALCREFQSEWDLIARSWNKGSKSDDL  96
             I L D  Y  L S PRD+ V VLLTA D R+GC LCREFQ E++L+A+SW K  K+   
Sbjct  13   VIKLNDSNYKRLLSGPRDYSVVVLLTALDPRFGCQLCREFQPEFELVAKSWFKDHKAGSS  72

Query  97   KLLLATLDFSNGKETFQKLMLQTAPVLLLFPPTVGPFAKVDNAPVRFDFT-GPLSADQLY  155
            KL  ATLDF +GK+ FQ L LQTAP LLLFPPT GP    D+ P ++DFT G  SA+QL 
Sbjct  73   KLFFATLDFDDGKDVFQSLGLQTAPHLLLFPPTGGP-KISDSEPDQYDFTRGGFSAEQLA  131

Query  156  TWISRHLPEGAKPPLIRPINYMRIISAITLLMGVITLFTVLSP-----------------  198
             ++SRH       P+ RPINY +II    +++GV+TL     P                 
Sbjct  132  AFLSRHTGV--PIPIKRPINYSKIIITFIIVLGVVTLLKKARPYLLPILQNRNLWAALSL  189

Query  199  --------GHMFNHIRKVPYVVGDGKGGISYFAGGFSNQFGMETQIVAAIYAVLSFAAIA  250
                    G+MFNHIR VPYV  DGKGGISYFAGG  NQFG+ETQIVAA+Y +L+   I 
Sbjct  190  IFILLFTSGYMFNHIRGVPYVARDGKGGISYFAGGSQNQFGIETQIVAALYGLLALLVIL  249

Query  251  LSMKVPRMGDKKAQQLAVVIWAGVLLCMYSFLLNVFKTKNGGYP  294
            L++KVPR+ D K Q++AV++WAGVL   +SFLL+VF+ KN GYP
Sbjct  250  LTIKVPRIKDPKVQRVAVIVWAGVLFLFFSFLLSVFRIKNPGYP  293



Lambda      K        H        a         alpha
   0.323    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00011346

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.143    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00017661

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  205     1e-65
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  117     2e-32


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 205 bits (525),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 106/173 (61%), Gaps = 8/173 (5%)

Query  109  TPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPT  168
            TPIQ+   P +  GRDV+  A TGSGKTLAF LP ++ +       +      A++++PT
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQ------ALVLAPT  54

Query  169  RELAMQIYDQLSKFGASVDIRVTCIYGGVKKDEQREALKTAAIVVATPGRLKDLKDDGSV  228
            RELA QIY++L K G  + ++V  + GG  + EQ E LK   I+V TPGRL DL  +   
Sbjct  55   RELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RK  113

Query  229  DLGKVKYLVLDEADRMLDKGFEQDIKDIIRSTPDSTRQTVMFTATWPPSVRDL  281
             L  +K LVLDEA R+LD GF  D+++I+R  P   RQ ++ +AT P ++ DL
Sbjct  114  LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKK-RQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 117 bits (295),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 53/110 (48%), Positives = 66/110 (60%), Gaps = 6/110 (5%)

Query  319  EKEARLVQLLSRSQRGAAVGDKVLVFCLYKKEAVRVERLLRSKNFKVAGIHGDLNQHERF  378
            EK   L++LL + +     G KVL+F   KK  +  E LL  +  KVA +HGDL+Q ER 
Sbjct  1    EKLEALLELLKKER-----GGKVLIFSQTKKT-LEAELLLEKEGIKVARLHGDLSQEERE  54

Query  379  KSLEAFKTGSATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGR  428
            + LE F+ G   VLVATDVA RGLD+P V LVIN   P     Y+ RIGR
Sbjct  55   EILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGR  104



Lambda      K        H        a         alpha
   0.317    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00011347

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  205     1e-65
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  117     2e-32


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 205 bits (525),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 106/173 (61%), Gaps = 8/173 (5%)

Query  109  TPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPT  168
            TPIQ+   P +  GRDV+  A TGSGKTLAF LP ++ +       +      A++++PT
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQ------ALVLAPT  54

Query  169  RELAMQIYDQLSKFGASVDIRVTCIYGGVKKDEQREALKTAAIVVATPGRLKDLKDDGSV  228
            RELA QIY++L K G  + ++V  + GG  + EQ E LK   I+V TPGRL DL  +   
Sbjct  55   RELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RK  113

Query  229  DLGKVKYLVLDEADRMLDKGFEQDIKDIIRSTPDSTRQTVMFTATWPPSVRDL  281
             L  +K LVLDEA R+LD GF  D+++I+R  P   RQ ++ +AT P ++ DL
Sbjct  114  LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKK-RQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 117 bits (295),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 53/110 (48%), Positives = 66/110 (60%), Gaps = 6/110 (5%)

Query  319  EKEARLVQLLSRSQRGAAVGDKVLVFCLYKKEAVRVERLLRSKNFKVAGIHGDLNQHERF  378
            EK   L++LL + +     G KVL+F   KK  +  E LL  +  KVA +HGDL+Q ER 
Sbjct  1    EKLEALLELLKKER-----GGKVLIFSQTKKT-LEAELLLEKEGIKVARLHGDLSQEERE  54

Query  379  KSLEAFKTGSATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGR  428
            + LE F+ G   VLVATDVA RGLD+P V LVIN   P     Y+ RIGR
Sbjct  55   EILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGR  104



Lambda      K        H        a         alpha
   0.317    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00017663

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  205     1e-65
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  117     2e-32


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 205 bits (525),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 106/173 (61%), Gaps = 8/173 (5%)

Query  109  TPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPT  168
            TPIQ+   P +  GRDV+  A TGSGKTLAF LP ++ +       +      A++++PT
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQ------ALVLAPT  54

Query  169  RELAMQIYDQLSKFGASVDIRVTCIYGGVKKDEQREALKTAAIVVATPGRLKDLKDDGSV  228
            RELA QIY++L K G  + ++V  + GG  + EQ E LK   I+V TPGRL DL  +   
Sbjct  55   RELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RK  113

Query  229  DLGKVKYLVLDEADRMLDKGFEQDIKDIIRSTPDSTRQTVMFTATWPPSVRDL  281
             L  +K LVLDEA R+LD GF  D+++I+R  P   RQ ++ +AT P ++ DL
Sbjct  114  LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKK-RQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 117 bits (295),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 53/110 (48%), Positives = 66/110 (60%), Gaps = 6/110 (5%)

Query  319  EKEARLVQLLSRSQRGAAVGDKVLVFCLYKKEAVRVERLLRSKNFKVAGIHGDLNQHERF  378
            EK   L++LL + +     G KVL+F   KK  +  E LL  +  KVA +HGDL+Q ER 
Sbjct  1    EKLEALLELLKKER-----GGKVLIFSQTKKT-LEAELLLEKEGIKVARLHGDLSQEERE  54

Query  379  KSLEAFKTGSATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGR  428
            + LE F+ G   VLVATDVA RGLD+P V LVIN   P     Y+ RIGR
Sbjct  55   EILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGR  104



Lambda      K        H        a         alpha
   0.317    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0769    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00017662

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  205     1e-65
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  117     2e-32


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 205 bits (525),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 106/173 (61%), Gaps = 8/173 (5%)

Query  109  TPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPT  168
            TPIQ+   P +  GRDV+  A TGSGKTLAF LP ++ +       +      A++++PT
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQ------ALVLAPT  54

Query  169  RELAMQIYDQLSKFGASVDIRVTCIYGGVKKDEQREALKTAAIVVATPGRLKDLKDDGSV  228
            RELA QIY++L K G  + ++V  + GG  + EQ E LK   I+V TPGRL DL  +   
Sbjct  55   RELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RK  113

Query  229  DLGKVKYLVLDEADRMLDKGFEQDIKDIIRSTPDSTRQTVMFTATWPPSVRDL  281
             L  +K LVLDEA R+LD GF  D+++I+R  P   RQ ++ +AT P ++ DL
Sbjct  114  LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKK-RQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 117 bits (295),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 53/110 (48%), Positives = 66/110 (60%), Gaps = 6/110 (5%)

Query  319  EKEARLVQLLSRSQRGAAVGDKVLVFCLYKKEAVRVERLLRSKNFKVAGIHGDLNQHERF  378
            EK   L++LL + +     G KVL+F   KK  +  E LL  +  KVA +HGDL+Q ER 
Sbjct  1    EKLEALLELLKKER-----GGKVLIFSQTKKT-LEAELLLEKEGIKVARLHGDLSQEERE  54

Query  379  KSLEAFKTGSATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGR  428
            + LE F+ G   VLVATDVA RGLD+P V LVIN   P     Y+ RIGR
Sbjct  55   EILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGR  104



Lambda      K        H        a         alpha
   0.317    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00011348

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  205     1e-65
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  117     2e-32


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 205 bits (525),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 106/173 (61%), Gaps = 8/173 (5%)

Query  109  TPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPT  168
            TPIQ+   P +  GRDV+  A TGSGKTLAF LP ++ +       +      A++++PT
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQ------ALVLAPT  54

Query  169  RELAMQIYDQLSKFGASVDIRVTCIYGGVKKDEQREALKTAAIVVATPGRLKDLKDDGSV  228
            RELA QIY++L K G  + ++V  + GG  + EQ E LK   I+V TPGRL DL  +   
Sbjct  55   RELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RK  113

Query  229  DLGKVKYLVLDEADRMLDKGFEQDIKDIIRSTPDSTRQTVMFTATWPPSVRDL  281
             L  +K LVLDEA R+LD GF  D+++I+R  P   RQ ++ +AT P ++ DL
Sbjct  114  LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKK-RQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 117 bits (295),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 53/110 (48%), Positives = 66/110 (60%), Gaps = 6/110 (5%)

Query  319  EKEARLVQLLSRSQRGAAVGDKVLVFCLYKKEAVRVERLLRSKNFKVAGIHGDLNQHERF  378
            EK   L++LL + +     G KVL+F   KK  +  E LL  +  KVA +HGDL+Q ER 
Sbjct  1    EKLEALLELLKKER-----GGKVLIFSQTKKT-LEAELLLEKEGIKVARLHGDLSQEERE  54

Query  379  KSLEAFKTGSATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGR  428
            + LE F+ G   VLVATDVA RGLD+P V LVIN   P     Y+ RIGR
Sbjct  55   EILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGR  104



Lambda      K        H        a         alpha
   0.317    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00011349

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  205     1e-65
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  117     2e-32


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 205 bits (525),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 106/173 (61%), Gaps = 8/173 (5%)

Query  109  TPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPT  168
            TPIQ+   P +  GRDV+  A TGSGKTLAF LP ++ +       +      A++++PT
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQ------ALVLAPT  54

Query  169  RELAMQIYDQLSKFGASVDIRVTCIYGGVKKDEQREALKTAAIVVATPGRLKDLKDDGSV  228
            RELA QIY++L K G  + ++V  + GG  + EQ E LK   I+V TPGRL DL  +   
Sbjct  55   RELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RK  113

Query  229  DLGKVKYLVLDEADRMLDKGFEQDIKDIIRSTPDSTRQTVMFTATWPPSVRDL  281
             L  +K LVLDEA R+LD GF  D+++I+R  P   RQ ++ +AT P ++ DL
Sbjct  114  LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKK-RQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 117 bits (295),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 53/110 (48%), Positives = 66/110 (60%), Gaps = 6/110 (5%)

Query  319  EKEARLVQLLSRSQRGAAVGDKVLVFCLYKKEAVRVERLLRSKNFKVAGIHGDLNQHERF  378
            EK   L++LL + +     G KVL+F   KK  +  E LL  +  KVA +HGDL+Q ER 
Sbjct  1    EKLEALLELLKKER-----GGKVLIFSQTKKT-LEAELLLEKEGIKVARLHGDLSQEERE  54

Query  379  KSLEAFKTGSATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGR  428
            + LE F+ G   VLVATDVA RGLD+P V LVIN   P     Y+ RIGR
Sbjct  55   EILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGR  104



Lambda      K        H        a         alpha
   0.317    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00017665

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  205     1e-65
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  117     2e-32


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 205 bits (525),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 106/173 (61%), Gaps = 8/173 (5%)

Query  109  TPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPT  168
            TPIQ+   P +  GRDV+  A TGSGKTLAF LP ++ +       +      A++++PT
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQ------ALVLAPT  54

Query  169  RELAMQIYDQLSKFGASVDIRVTCIYGGVKKDEQREALKTAAIVVATPGRLKDLKDDGSV  228
            RELA QIY++L K G  + ++V  + GG  + EQ E LK   I+V TPGRL DL  +   
Sbjct  55   RELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RK  113

Query  229  DLGKVKYLVLDEADRMLDKGFEQDIKDIIRSTPDSTRQTVMFTATWPPSVRDL  281
             L  +K LVLDEA R+LD GF  D+++I+R  P   RQ ++ +AT P ++ DL
Sbjct  114  LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKK-RQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 117 bits (295),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 53/110 (48%), Positives = 66/110 (60%), Gaps = 6/110 (5%)

Query  319  EKEARLVQLLSRSQRGAAVGDKVLVFCLYKKEAVRVERLLRSKNFKVAGIHGDLNQHERF  378
            EK   L++LL + +     G KVL+F   KK  +  E LL  +  KVA +HGDL+Q ER 
Sbjct  1    EKLEALLELLKKER-----GGKVLIFSQTKKT-LEAELLLEKEGIKVARLHGDLSQEERE  54

Query  379  KSLEAFKTGSATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGR  428
            + LE F+ G   VLVATDVA RGLD+P V LVIN   P     Y+ RIGR
Sbjct  55   EILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGR  104



Lambda      K        H        a         alpha
   0.317    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00011350

Length=783
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      144     1e-38
CDD:407678 pfam17807, zf-UBP_var, Variant UBP zinc finger. This d...  90.3    1e-22
CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases a...  89.2    2e-22


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 144 bits (365),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 96/482 (20%), Positives = 145/482 (30%), Gaps = 178/482 (37%)

Query  303  TGLTNLGNSCYLSSVVQCLFSSPEFQRRYYHNSKEPPLSQQPAE-DFETQMRKLADGILS  361
            TGL NLGN+CY++SV+Q LFS P F+      S     S+   + +    +R L   +  
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  362  GRYSKPNADVIASPDSPEVPHQKGLSPAMFKHLIGRGHEEFSTMRQQDAFEFLLHLFKLI  421
               S                    +SP MFK  +G+ + +FS  +QQDA EFLL L   +
Sbjct  61   NSKSSS------------------VSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGL  102

Query  422  QR----TQSPEGGGNPIDNFRFAVEQRLQCLSCKGVRYRIDEQDNVSIPVPVRRQLGTNS  477
                    S E      D FR  ++ RL+CLSC  V      +    + +P+        
Sbjct  103  HEDLNGNHSTENESLITDLFRGQLKSRLKCLSCGEVSET--FEPFSDLSLPIPGDSAELK  160

Query  478  TDPSADSEFESVTLSECLDVFTANEIVELSCPSCGNSNGFSKRSSFRTMPQELVLNARRF  537
            T        +   L E  D           C  CG      K+     +P  L+++ +RF
Sbjct  161  TASLQICFLQFSKLEELDDEEKYY------CDKCGCKQDAIKQLKISRLPPVLIIHLKRF  214

Query  538  EVVNWVPRKLDIPVNVSDEPLDFSPYVGSMKEEGEKLLPEDDPSVSGFSPDQNILNQLLA  597
                    KL+  V    E LD S Y+    +     L +                    
Sbjct  215  SYNRSTWEKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQD--------------------  253

Query  598  MGFPKIRCEKALHATGNSDTEAAMNWLFSHMDDPDIDIPLVVSKVTGPANMALQDPSKVS  657
                                                                        
Sbjct       ------------------------------------------------------------  

Query  658  QLIEMGIDEDRAQRALAATGGDVDRALDWVFSHPDERPEYKSGDCDSGSRLPGFNETPAI  717
                                                                        
Sbjct       ------------------------------------------------------------  

Query  718  YQLRAIVCHKGTSVHAGHYVAFVRKTLPGQDNPSWVMFNDEKVVGVDDIQDMKKF-AYLY  776
            Y+L A+V H G S+ +GHY+A+++      +N  W  F+DEKV  VD+   +    AY+ 
Sbjct  254  YRLVAVVVHSG-SLSSGHYIAYIKAY----ENNRWYKFDDEKVTEVDEETAVLSSSAYIL  308

Query  777  FF  778
            F+
Sbjct  309  FY  310


>CDD:407678 pfam17807, zf-UBP_var, Variant UBP zinc finger.  This domain 
is found in ubiquitin C-terminal hydrolase enzymes and is related 
to the pfam02148 domain. However, it has an altered pattern 
of zinc binding residues.
Length=64

 Score = 90.3 bits (225),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 34/66 (52%), Positives = 45/66 (68%), Gaps = 3/66 (5%)

Query  12  LRPPSQSQAVYREECTQCFDSVDEETGLNVCLFCFNGGCTGDRNHAMLHYKRFCHPLALN  71
           +R PS S  VY++EC  CFD+ + E GL VCL CF G C   + HA LH++R  HP+ LN
Sbjct  1   VRVPSASDRVYKDECIFCFDTPESEGGLFVCLKCFLGFC---KKHAQLHFERTGHPVYLN  57

Query  72  IKRSRK  77
           IKR++K
Sbjct  58  IKRTKK  63


>CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other 
protein.  
Length=63

 Score = 89.2 bits (222),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 12/75 (16%)

Query  176  CTMCTLKENLWLCLECGNLGCGRSQFGGLGGNSHALAHSDSTSHAVAVKLGSITADGSAD  235
            C++C    NLWLCL CG++GCGR Q      NSHAL H + T H +AV L ++T      
Sbjct  1    CSLCGNTSNLWLCLTCGHVGCGRYQ------NSHALEHYEETGHPLAVNLSTLT------  48

Query  236  IYCYKCNEERTDPDL  250
            +YCY C++   DP L
Sbjct  49   VYCYPCDDYVHDPSL  63



Lambda      K        H        a         alpha
   0.318    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1002599728


Query= TCONS_00017666

Length=783
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      144     1e-38
CDD:407678 pfam17807, zf-UBP_var, Variant UBP zinc finger. This d...  90.3    1e-22
CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases a...  89.2    2e-22


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 144 bits (365),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 96/482 (20%), Positives = 145/482 (30%), Gaps = 178/482 (37%)

Query  303  TGLTNLGNSCYLSSVVQCLFSSPEFQRRYYHNSKEPPLSQQPAE-DFETQMRKLADGILS  361
            TGL NLGN+CY++SV+Q LFS P F+      S     S+   + +    +R L   +  
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  362  GRYSKPNADVIASPDSPEVPHQKGLSPAMFKHLIGRGHEEFSTMRQQDAFEFLLHLFKLI  421
               S                    +SP MFK  +G+ + +FS  +QQDA EFLL L   +
Sbjct  61   NSKSSS------------------VSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGL  102

Query  422  QR----TQSPEGGGNPIDNFRFAVEQRLQCLSCKGVRYRIDEQDNVSIPVPVRRQLGTNS  477
                    S E      D FR  ++ RL+CLSC  V      +    + +P+        
Sbjct  103  HEDLNGNHSTENESLITDLFRGQLKSRLKCLSCGEVSET--FEPFSDLSLPIPGDSAELK  160

Query  478  TDPSADSEFESVTLSECLDVFTANEIVELSCPSCGNSNGFSKRSSFRTMPQELVLNARRF  537
            T        +   L E  D           C  CG      K+     +P  L+++ +RF
Sbjct  161  TASLQICFLQFSKLEELDDEEKYY------CDKCGCKQDAIKQLKISRLPPVLIIHLKRF  214

Query  538  EVVNWVPRKLDIPVNVSDEPLDFSPYVGSMKEEGEKLLPEDDPSVSGFSPDQNILNQLLA  597
                    KL+  V    E LD S Y+    +     L +                    
Sbjct  215  SYNRSTWEKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQD--------------------  253

Query  598  MGFPKIRCEKALHATGNSDTEAAMNWLFSHMDDPDIDIPLVVSKVTGPANMALQDPSKVS  657
                                                                        
Sbjct       ------------------------------------------------------------  

Query  658  QLIEMGIDEDRAQRALAATGGDVDRALDWVFSHPDERPEYKSGDCDSGSRLPGFNETPAI  717
                                                                        
Sbjct       ------------------------------------------------------------  

Query  718  YQLRAIVCHKGTSVHAGHYVAFVRKTLPGQDNPSWVMFNDEKVVGVDDIQDMKKF-AYLY  776
            Y+L A+V H G S+ +GHY+A+++      +N  W  F+DEKV  VD+   +    AY+ 
Sbjct  254  YRLVAVVVHSG-SLSSGHYIAYIKAY----ENNRWYKFDDEKVTEVDEETAVLSSSAYIL  308

Query  777  FF  778
            F+
Sbjct  309  FY  310


>CDD:407678 pfam17807, zf-UBP_var, Variant UBP zinc finger.  This domain 
is found in ubiquitin C-terminal hydrolase enzymes and is related 
to the pfam02148 domain. However, it has an altered pattern 
of zinc binding residues.
Length=64

 Score = 90.3 bits (225),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 34/66 (52%), Positives = 45/66 (68%), Gaps = 3/66 (5%)

Query  12  LRPPSQSQAVYREECTQCFDSVDEETGLNVCLFCFNGGCTGDRNHAMLHYKRFCHPLALN  71
           +R PS S  VY++EC  CFD+ + E GL VCL CF G C   + HA LH++R  HP+ LN
Sbjct  1   VRVPSASDRVYKDECIFCFDTPESEGGLFVCLKCFLGFC---KKHAQLHFERTGHPVYLN  57

Query  72  IKRSRK  77
           IKR++K
Sbjct  58  IKRTKK  63


>CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other 
protein.  
Length=63

 Score = 89.2 bits (222),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 12/75 (16%)

Query  176  CTMCTLKENLWLCLECGNLGCGRSQFGGLGGNSHALAHSDSTSHAVAVKLGSITADGSAD  235
            C++C    NLWLCL CG++GCGR Q      NSHAL H + T H +AV L ++T      
Sbjct  1    CSLCGNTSNLWLCLTCGHVGCGRYQ------NSHALEHYEETGHPLAVNLSTLT------  48

Query  236  IYCYKCNEERTDPDL  250
            +YCY C++   DP L
Sbjct  49   VYCYPCDDYVHDPSL  63



Lambda      K        H        a         alpha
   0.318    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1002599728


Query= TCONS_00011351

Length=734
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      142     3e-38
CDD:407678 pfam17807, zf-UBP_var, Variant UBP zinc finger. This d...  90.3    9e-23
CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases a...  88.5    4e-22


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 142 bits (360),  Expect = 3e-38, Method: Composition-based stats.
 Identities = 73/280 (26%), Positives = 108/280 (39%), Gaps = 32/280 (11%)

Query  303  TGLTNLGNSCYLSSVVQCLFSSPEFQRRYYHNSKEPPLSQQPAE-DFETQMRKLADGILS  361
            TGL NLGN+CY++SV+Q LFS P F+      S     S+   + +    +R L   +  
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  362  GRYSKPNADVIASPDSPEVPHQKGLSPAMFKHLIGRGHEEFSTMRQQDAFEFLLHLFKLI  421
               S                    +SP MFK  +G+ + +FS  +QQDA EFLL L   +
Sbjct  61   NSKSSS------------------VSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGL  102

Query  422  QR----TQSPEGGGNPIDNFRFAVEQRLQCLSCKGVRYRIDEQDNVSIPVPVRRQLGTNS  477
                    S E      D FR  ++ RL+CLSC  V      +    + +P+        
Sbjct  103  HEDLNGNHSTENESLITDLFRGQLKSRLKCLSCGEVSET--FEPFSDLSLPIPGDSAELK  160

Query  478  TDPSADSEFESVTLSECLDVFTANEIVELSCPSCGNSNGFSKRSSFRTMPQELVLNARRF  537
            T        +   L E  D           C  CG      K+     +P  L+++ +RF
Sbjct  161  TASLQICFLQFSKLEELDDEEKYY------CDKCGCKQDAIKQLKISRLPPVLIIHLKRF  214

Query  538  EVVNWVPRKLDIPVNVSDEPLDFSPYVGSMKEEGEKLLPE  577
                    KL+  V    E LD S Y+    +     L +
Sbjct  215  SYNRSTWEKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQD  253


>CDD:407678 pfam17807, zf-UBP_var, Variant UBP zinc finger.  This domain 
is found in ubiquitin C-terminal hydrolase enzymes and is related 
to the pfam02148 domain. However, it has an altered pattern 
of zinc binding residues.
Length=64

 Score = 90.3 bits (225),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 34/66 (52%), Positives = 45/66 (68%), Gaps = 3/66 (5%)

Query  12  LRPPSQSQAVYREECTQCFDSVDEETGLNVCLFCFNGGCTGDRNHAMLHYKRFCHPLALN  71
           +R PS S  VY++EC  CFD+ + E GL VCL CF G C   + HA LH++R  HP+ LN
Sbjct  1   VRVPSASDRVYKDECIFCFDTPESEGGLFVCLKCFLGFC---KKHAQLHFERTGHPVYLN  57

Query  72  IKRSRK  77
           IKR++K
Sbjct  58  IKRTKK  63


>CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other 
protein.  
Length=63

 Score = 88.5 bits (220),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 12/75 (16%)

Query  176  CTMCTLKENLWLCLECGNLGCGRSQFGGLGGNSHALAHSDSTSHAVAVKLGSITADGSAD  235
            C++C    NLWLCL CG++GCGR Q      NSHAL H + T H +AV L ++T      
Sbjct  1    CSLCGNTSNLWLCLTCGHVGCGRYQ------NSHALEHYEETGHPLAVNLSTLT------  48

Query  236  IYCYKCNEERTDPDL  250
            +YCY C++   DP L
Sbjct  49   VYCYPCDDYVHDPSL  63



Lambda      K        H        a         alpha
   0.317    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 931297280


Query= TCONS_00017667

Length=726
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      145     4e-39
CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases a...  91.6    3e-23


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 145 bits (367),  Expect = 4e-39, Method: Composition-based stats.
 Identities = 96/482 (20%), Positives = 145/482 (30%), Gaps = 178/482 (37%)

Query  246  TGLTNLGNSCYLSSVVQCLFSSPEFQRRYYHNSKEPPLSQQPAE-DFETQMRKLADGILS  304
            TGL NLGN+CY++SV+Q LFS P F+      S     S+   + +    +R L   +  
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  305  GRYSKPNADVIASPDSPEVPHQKGLSPAMFKHLIGRGHEEFSTMRQQDAFEFLLHLFKLI  364
               S                    +SP MFK  +G+ + +FS  +QQDA EFLL L   +
Sbjct  61   NSKSSS------------------VSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGL  102

Query  365  QR----TQSPEGGGNPIDNFRFAVEQRLQCLSCKGVRYRIDEQDNVSIPVPVRRQLGTNS  420
                    S E      D FR  ++ RL+CLSC  V      +    + +P+        
Sbjct  103  HEDLNGNHSTENESLITDLFRGQLKSRLKCLSCGEVSET--FEPFSDLSLPIPGDSAELK  160

Query  421  TDPSADSEFESVTLSECLDVFTANEIVELSCPSCGNSNGFSKRSSFRTMPQELVLNARRF  480
            T        +   L E  D           C  CG      K+     +P  L+++ +RF
Sbjct  161  TASLQICFLQFSKLEELDDEEKYY------CDKCGCKQDAIKQLKISRLPPVLIIHLKRF  214

Query  481  EVVNWVPRKLDIPVNVSDEPLDFSPYVGSMKEEGEKLLPEDDPSVSGFSPDQNILNQLLA  540
                    KL+  V    E LD S Y+    +     L +                    
Sbjct  215  SYNRSTWEKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQD--------------------  253

Query  541  MGFPKIRCEKALHATGNSDTEAAMNWLFSHMDDPDIDIPLVVSKVTGPANMALQDPSKVS  600
                                                                        
Sbjct       ------------------------------------------------------------  

Query  601  QLIEMGIDEDRAQRALAATGGDVDRALDWVFSHPDERPEYKSGDCDSGSRLPGFNETPAI  660
                                                                        
Sbjct       ------------------------------------------------------------  

Query  661  YQLRAIVCHKGTSVHAGHYVAFVRKTLPGQDNPSWVMFNDEKVVGVDDIQDMKKF-AYLY  719
            Y+L A+V H G S+ +GHY+A+++      +N  W  F+DEKV  VD+   +    AY+ 
Sbjct  254  YRLVAVVVHSG-SLSSGHYIAYIKAY----ENNRWYKFDDEKVTEVDEETAVLSSSAYIL  308

Query  720  FF  721
            F+
Sbjct  309  FY  310


>CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other 
protein.  
Length=63

 Score = 91.6 bits (228),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 12/75 (16%)

Query  119  CTMCTLKENLWLCLECGNLGCGRSQFGGLGGNSHALAHSDSTSHAVAVKLGSITADGSAD  178
            C++C    NLWLCL CG++GCGR Q      NSHAL H + T H +AV L ++T      
Sbjct  1    CSLCGNTSNLWLCLTCGHVGCGRYQ------NSHALEHYEETGHPLAVNLSTLT------  48

Query  179  IYCYKCNEERTDPDL  193
            +YCY C++   DP L
Sbjct  49   VYCYPCDDYVHDPSL  63



Lambda      K        H        a         alpha
   0.318    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 919656064


Query= TCONS_00011352

Length=696
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      146     2e-39


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 146 bits (369),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 96/482 (20%), Positives = 145/482 (30%), Gaps = 178/482 (37%)

Query  216  TGLTNLGNSCYLSSVVQCLFSSPEFQRRYYHNSKEPPLSQQPAE-DFETQMRKLADGILS  274
            TGL NLGN+CY++SV+Q LFS P F+      S     S+   + +    +R L   +  
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  275  GRYSKPNADVIASPDSPEVPHQKGLSPAMFKHLIGRGHEEFSTMRQQDAFEFLLHLFKLI  334
               S                    +SP MFK  +G+ + +FS  +QQDA EFLL L   +
Sbjct  61   NSKSSS------------------VSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGL  102

Query  335  Q----RTQSPEGGGNPIDNFRFAVEQRLQCLSCKGVRYRIDEQDNVSIPVPVRRQLGTNS  390
                    S E      D FR  ++ RL+CLSC  V      +    + +P+        
Sbjct  103  HEDLNGNHSTENESLITDLFRGQLKSRLKCLSCGEVSET--FEPFSDLSLPIPGDSAELK  160

Query  391  TDPSADSEFESVTLSECLDVFTANEIVELSCPSCGNSNGFSKRSSFRTMPQELVLNARRF  450
            T        +   L E  D           C  CG      K+     +P  L+++ +RF
Sbjct  161  TASLQICFLQFSKLEELDDEEKYY------CDKCGCKQDAIKQLKISRLPPVLIIHLKRF  214

Query  451  EVVNWVPRKLDIPVNVSDEPLDFSPYVGSMKEEGEKLLPEDDPSVSGFSPDQNILNQLLA  510
                    KL+  V    E LD S Y+    +     L +                    
Sbjct  215  SYNRSTWEKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQD--------------------  253

Query  511  MGFPKIRCEKALHATGNSDTEAAMNWLFSHMDDPDIDIPLVVSKVTGPANMALQDPSKVS  570
                                                                        
Sbjct       ------------------------------------------------------------  

Query  571  QLIEMGIDEDRAQRALAATGGDVDRALDWVFSHPDERPEYKSGDCDSGSRLPGFNETPAI  630
                                                                        
Sbjct       ------------------------------------------------------------  

Query  631  YQLRAIVCHKGTSVHAGHYVAFVRKTLPGQDNPSWVMFNDEKVVGVDDIQDMKKF-AYLY  689
            Y+L A+V H G S+ +GHY+A+++      +N  W  F+DEKV  VD+   +    AY+ 
Sbjct  254  YRLVAVVVHSG-SLSSGHYIAYIKAY----ENNRWYKFDDEKVTEVDEETAVLSSSAYIL  308

Query  690  FF  691
            F+
Sbjct  309  FY  310



Lambda      K        H        a         alpha
   0.317    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 889298370


Query= TCONS_00017668

Length=557
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      143     3e-39
CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases a...  86.9    8e-22


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 143 bits (363),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 73/280 (26%), Positives = 108/280 (39%), Gaps = 32/280 (11%)

Query  126  TGLTNLGNSCYLSSVVQCLFSSPEFQRRYYHNSKEPPLSQQPAE-DFETQMRKLADGILS  184
            TGL NLGN+CY++SV+Q LFS P F+      S     S+   + +    +R L   +  
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  185  GRYSKPNADVIASPDSPEVPHQKGLSPAMFKHLIGRGHEEFSTMRQQDAFEFLLHLFKLI  244
               S                    +SP MFK  +G+ + +FS  +QQDA EFLL L   +
Sbjct  61   NSKSSS------------------VSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGL  102

Query  245  Q----RTQSPEGGGNPIDNFRFAVEQRLQCLSCKGVRYRIDEQDNVSIPVPVRRQLGTNS  300
                    S E      D FR  ++ RL+CLSC  V      +    + +P+        
Sbjct  103  HEDLNGNHSTENESLITDLFRGQLKSRLKCLSCGEVSET--FEPFSDLSLPIPGDSAELK  160

Query  301  TDPSADSEFESVTLSECLDVFTANEIVELSCPSCGNSNGFSKRSSFRTMPQELVLNARRF  360
            T        +   L E  D           C  CG      K+     +P  L+++ +RF
Sbjct  161  TASLQICFLQFSKLEELDDEEKYY------CDKCGCKQDAIKQLKISRLPPVLIIHLKRF  214

Query  361  EVVNWVPRKLDIPVNVSDEPLDFSPYVGSMKEEGEKLLPE  400
                    KL+  V    E LD S Y+    +     L +
Sbjct  215  SYNRSTWEKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQD  253


>CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other 
protein.  
Length=63

 Score = 86.9 bits (216),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 33/72 (46%), Positives = 42/72 (58%), Gaps = 12/72 (17%)

Query  2   CTLKENLWLCLECGNLGCGRSQFGGLGGNSHALAHSDSTSHAVAVKLGSITADGSADIYC  61
           C    NLWLCL CG++GCGR Q      NSHAL H + T H +AV L ++T      +YC
Sbjct  4   CGNTSNLWLCLTCGHVGCGRYQ------NSHALEHYEETGHPLAVNLSTLT------VYC  51

Query  62  YKCNEERTDPDL  73
           Y C++   DP L
Sbjct  52  YPCDDYVHDPSL  63



Lambda      K        H        a         alpha
   0.316    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 694909020


Query= TCONS_00011354

Length=302


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00011355

Length=319


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00011356

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00017669

Length=326


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00011353

Length=456


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00017670

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.148    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00017671

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.143    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00017673

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.122    0.312    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00011357

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  59.6    8e-13


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 59.6 bits (145),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 20/65 (31%), Positives = 31/65 (48%), Gaps = 0/65 (0%)

Query  8   LYVTGFGHGTRARDLAYEFERYGRLVRCDIPAPRTPSSRLFAFVEYESRRDADDAYHEMH  67
           L+V      T   DL   F ++G +    +    T  S+ FAFVE+E   DA+ A   ++
Sbjct  1   LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEALN  60

Query  68  NKRIG  72
            K +G
Sbjct  61  GKELG  65



Lambda      K        H        a         alpha
   0.318    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00011358

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00017675

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00017676

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00017674

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  59.6    8e-13


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 59.6 bits (145),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 20/65 (31%), Positives = 31/65 (48%), Gaps = 0/65 (0%)

Query  8   LYVTGFGHGTRARDLAYEFERYGRLVRCDIPAPRTPSSRLFAFVEYESRRDADDAYHEMH  67
           L+V      T   DL   F ++G +    +    T  S+ FAFVE+E   DA+ A   ++
Sbjct  1   LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEALN  60

Query  68  NKRIG  72
            K +G
Sbjct  61  GKELG  65



Lambda      K        H        a         alpha
   0.318    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00017677

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00017678

Length=316
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  59.6    2e-12


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 59.6 bits (145),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 20/65 (31%), Positives = 31/65 (48%), Gaps = 0/65 (0%)

Query  8   LYVTGFGHGTRARDLAYEFERYGRLVRCDIPAPRTPSSRLFAFVEYESRRDADDAYHEMH  67
           L+V      T   DL   F ++G +    +    T  S+ FAFVE+E   DA+ A   ++
Sbjct  1   LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEALN  60

Query  68  NKRIG  72
            K +G
Sbjct  61  GKELG  65



Lambda      K        H        a         alpha
   0.320    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00011359

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00011360

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00011361

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  59.6    7e-13


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 59.6 bits (145),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 20/65 (31%), Positives = 31/65 (48%), Gaps = 0/65 (0%)

Query  8   LYVTGFGHGTRARDLAYEFERYGRLVRCDIPAPRTPSSRLFAFVEYESRRDADDAYHEMH  67
           L+V      T   DL   F ++G +    +    T  S+ FAFVE+E   DA+ A   ++
Sbjct  1   LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEALN  60

Query  68  NKRIG  72
            K +G
Sbjct  61  GKELG  65



Lambda      K        H        a         alpha
   0.319    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0850    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00011362

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00011363

Length=948
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460725 pfam02862, DDHD, DDHD domain. The DDHD domain is 180 r...  262     8e-82


>CDD:460725 pfam02862, DDHD, DDHD domain.  The DDHD domain is 180 residues 
long and contains four conserved residues that may form a 
metal binding site. The domain is named after these four residues. 
This pattern of conservation of metal binding residues 
is often seen in phosphoesterase domains. This domain is found 
in retinal degeneration B proteins, as well as a family 
of probable phospholipases. It has been shown that this domain 
is found in a longer C terminal region that binds to PYK2 
tyrosine kinase. These proteins have been called N-terminal 
domain-interacting receptor (Nir1, Nir2 and Nir3). This suggests 
that this region is involved in functionally important 
interactions in other members of this family.
Length=241

 Score = 262 bits (672),  Expect = 8e-82, Method: Composition-based stats.
 Identities = 111/311 (36%), Positives = 149/311 (48%), Gaps = 72/311 (23%)

Query  629  LDFDCEELFCLGSPVALFQMIKGNTIAGRSMIDEANMKRSKKACDHRNPKSFSSASRGAS  688
            LDF+ E  F LGSP+ LF  ++G  IAGRS  D                           
Sbjct  1    LDFEVENFFLLGSPLGLFLALRGAQIAGRSRSD---------------------------  33

Query  689  VQASTASSEGLTIVSSPKCRQLYNIFHPSDPVSYRIEPLISPAMSSLKPQPLPSVKKS--  746
                        I  SP C+QLYNIFHP DPV+YR+EPLI PA S+LKP  +P  KK   
Sbjct  34   -----------HIYGSPACKQLYNIFHPYDPVAYRLEPLIDPAYSNLKPVLIPYYKKRGL  82

Query  747  LWATPGQSLSMIGSRVGQSVGTLWSNFATGVASSLLNRSLGLGSEDASQSTMTATETQMS  806
                 G+ L+ IG+ VGQSV  LWS+ ++G   + LNRSLGL  E ++ S    +E    
Sbjct  83   RHLELGEGLTRIGAAVGQSVSGLWSSLSSG---ASLNRSLGLSDESSASSA--DSEQSHE  137

Query  807  RGSLANSSLGEDGSSRFGSGVDCQEASANRYRTLIDSNLETLYEGTNRAKTSCHNDILHS  866
            R S A+S+      ++                             +  + TS  N I   
Sbjct  138  RSSEASSASESSLQAQ---------------------------SSSAPSSTSSSNGIKEI  170

Query  867  AATESVVGRESEDLRRLKMEDAKVRALNTNGRVDYSIQEGAFDISLIASIASHLTYWADE  926
              TE           +L+ E+AKVRALN NGR+DY +QEGA +   ++++ SHL+YW  E
Sbjct  171  EETELDWSESERKADKLEREEAKVRALNPNGRIDYVLQEGALESQYLSALTSHLSYWESE  230

Query  927  DVNHFMLSQML  937
            DV  F+L Q+L
Sbjct  231  DVALFLLRQLL  241



Lambda      K        H        a         alpha
   0.314    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1206326352


Query= TCONS_00011364

Length=493


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00011365

Length=493


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00017680

Length=493


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00011366

Length=949
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460725 pfam02862, DDHD, DDHD domain. The DDHD domain is 180 r...  203     5e-60


>CDD:460725 pfam02862, DDHD, DDHD domain.  The DDHD domain is 180 residues 
long and contains four conserved residues that may form a 
metal binding site. The domain is named after these four residues. 
This pattern of conservation of metal binding residues 
is often seen in phosphoesterase domains. This domain is found 
in retinal degeneration B proteins, as well as a family 
of probable phospholipases. It has been shown that this domain 
is found in a longer C terminal region that binds to PYK2 
tyrosine kinase. These proteins have been called N-terminal 
domain-interacting receptor (Nir1, Nir2 and Nir3). This suggests 
that this region is involved in functionally important 
interactions in other members of this family.
Length=241

 Score = 203 bits (517),  Expect = 5e-60, Method: Composition-based stats.
 Identities = 97/279 (35%), Positives = 127/279 (46%), Gaps = 72/279 (26%)

Query  629  LDFDCEELFCLGSPVALFQMIKGNTIAGRSMIDEANMKRSKKACDHRNPKSFSSASRGAS  688
            LDF+ E  F LGSP+ LF  ++G  IAGRS  D                           
Sbjct  1    LDFEVENFFLLGSPLGLFLALRGAQIAGRSRSD---------------------------  33

Query  689  VQASTASSEGLTIVSSPKCRQLYNIFHPSDPVSYRIEPLISPAMSSLKPQPLPSVKKS--  746
                        I  SP C+QLYNIFHP DPV+YR+EPLI PA S+LKP  +P  KK   
Sbjct  34   -----------HIYGSPACKQLYNIFHPYDPVAYRLEPLIDPAYSNLKPVLIPYYKKRGL  82

Query  747  LWATPGQSLSMIGSRVGQSVGTLWSNFATGVASSLLNRSLGLGSEDASQSTMTATETQMS  806
                 G+ L+ IG+ VGQSV  LWS+ ++G   + LNRSLGL  E ++ S    +E    
Sbjct  83   RHLELGEGLTRIGAAVGQSVSGLWSSLSSG---ASLNRSLGLSDESSASS--ADSEQSHE  137

Query  807  RGSLANSSLGEDGSSRFGSGVDCQEASANRYRTLIDSNLETLYEGTNRAKTSCHNDILHS  866
            R S A+S+      ++                             +  + TS  N I   
Sbjct  138  RSSEASSASESSLQAQ---------------------------SSSAPSSTSSSNGIKEI  170

Query  867  AATESVVGRESEDLRRLKMEDAKVRALNTNGRVDYSIQE  905
              TE           +L+ E+AKVRALN NGR+DY +QE
Sbjct  171  EETELDWSESERKADKLEREEAKVRALNPNGRIDYVLQE  209



Lambda      K        H        a         alpha
   0.314    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1207742228


Query= TCONS_00011367

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460725 pfam02862, DDHD, DDHD domain. The DDHD domain is 180 r...  260     1e-84


>CDD:460725 pfam02862, DDHD, DDHD domain.  The DDHD domain is 180 residues 
long and contains four conserved residues that may form a 
metal binding site. The domain is named after these four residues. 
This pattern of conservation of metal binding residues 
is often seen in phosphoesterase domains. This domain is found 
in retinal degeneration B proteins, as well as a family 
of probable phospholipases. It has been shown that this domain 
is found in a longer C terminal region that binds to PYK2 
tyrosine kinase. These proteins have been called N-terminal 
domain-interacting receptor (Nir1, Nir2 and Nir3). This suggests 
that this region is involved in functionally important 
interactions in other members of this family.
Length=241

 Score = 260 bits (666),  Expect = 1e-84, Method: Composition-based stats.
 Identities = 111/311 (36%), Positives = 149/311 (48%), Gaps = 72/311 (23%)

Query  217  LDFDCEELFCLGSPVALFQMIKGNTIAGRSMIDEANMKRSKKACDHRNPKSFSSASRGAS  276
            LDF+ E  F LGSP+ LF  ++G  IAGRS  D                           
Sbjct  1    LDFEVENFFLLGSPLGLFLALRGAQIAGRSRSD---------------------------  33

Query  277  VQASTASSEGLTIVSSPKCRQLYNIFHPSDPVSYRIEPLISPAMSSLKPQPLPSVKKS--  334
                        I  SP C+QLYNIFHP DPV+YR+EPLI PA S+LKP  +P  KK   
Sbjct  34   -----------HIYGSPACKQLYNIFHPYDPVAYRLEPLIDPAYSNLKPVLIPYYKKRGL  82

Query  335  LWATPGQSLSMIGSRVGQSVGTLWSNFATGVASSLLNRSLGLGSEDASQSTMTATETQMS  394
                 G+ L+ IG+ VGQSV  LWS+ ++G   + LNRSLGL  E ++ S    +E    
Sbjct  83   RHLELGEGLTRIGAAVGQSVSGLWSSLSSG---ASLNRSLGLSDESSASSA--DSEQSHE  137

Query  395  RGSLANSSLGEDGSSRFGSGVDCQEASANRYRTLIDSNLETLYEGTNRAKTSCHNDILHS  454
            R S A+S+      ++                             +  + TS  N I   
Sbjct  138  RSSEASSASESSLQAQ---------------------------SSSAPSSTSSSNGIKEI  170

Query  455  AATESVVGRESEDLRRLKMEDAKVRALNTNGRVDYSIQEGAFDISLIASIASHLTYWADE  514
              TE           +L+ E+AKVRALN NGR+DY +QEGA +   ++++ SHL+YW  E
Sbjct  171  EETELDWSESERKADKLEREEAKVRALNPNGRIDYVLQEGALESQYLSALTSHLSYWESE  230

Query  515  DVNHFMLSQML  525
            DV  F+L Q+L
Sbjct  231  DVALFLLRQLL  241



Lambda      K        H        a         alpha
   0.316    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00011368

Length=940
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460484 pfam02194, PXA, PXA domain. This domain is associated ...  146     5e-41


>CDD:460484 pfam02194, PXA, PXA domain.  This domain is associated with PX 
domains pfam00787.
Length=181

 Score = 146 bits (372),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 56/188 (30%), Positives = 88/188 (47%), Gaps = 18/188 (10%)

Query  170  PPKTAAALRSLTDAVIKDYVNHWYEPILPAEQMFPLSCRKLLRDFIISLSSHLSRKRPAD  229
             P+  AAL  L D +I+D+V  WY  I  ++  FP   R+ LR  +  LS  L +   A 
Sbjct  1    SPEVDAALDELIDLIIRDFVQSWYSKI-SSDPEFPNEVRQTLRHALRELSQRLRKVDLAS  59

Query  230  AFLEFLTNSSSMVIVLLNELSA---AFQHVEGRLTPE---DAVKRYLDLHPESSLANIL-  282
              L      S ++ +L + L     A + V G+   E       +YL L P  +L+ +L 
Sbjct  60   LLL------SRLLPLLTSHLEDYRKAEEAVRGKKLNELDLALASKYLALKPHPALSPVLL  113

Query  283  ----SEQQQRMKLKMVADDILSSFLEPGVYACSVLRDFLREILAGVVLESAISNLSRSET  338
                S + ++  L+++ D +L   L P       +R  +REILA +VL   I+ LS  + 
Sbjct  114  SSSQSREAEQKYLRLLVDGLLPLLLPPEDLESRPVRVLVREILACLVLLPVINKLSDPDF  173

Query  339  INGWIIHL  346
            IN  I+ L
Sbjct  174  INELIVKL  181



Lambda      K        H        a         alpha
   0.312    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1194999344


Query= TCONS_00017682

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460484 pfam02194, PXA, PXA domain. This domain is associated ...  110     2e-28
CDD:462541 pfam08628, Nexin_C, Sorting nexin C terminal. This reg...  107     4e-28


>CDD:460484 pfam02194, PXA, PXA domain.  This domain is associated with PX 
domains pfam00787.
Length=181

 Score = 110 bits (277),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 17/155 (11%)

Query  2    FPLSCRKLLRDFIISLSSHLSRKRPADAFLEFLTNSSSMVIVLLNELSA---AFQHVEGR  58
            FP   R+ LR  +  LS  L +   A   L      S ++ +L + L     A + V G+
Sbjct  33   FPNEVRQTLRHALRELSQRLRKVDLASLLL------SRLLPLLTSHLEDYRKAEEAVRGK  86

Query  59   LTPE---DAVKRYLDLHPESSLANIL-----SEQQQRMKLKMVADDILSSFLEPGVYACS  110
               E       +YL L P  +L+ +L     S + ++  L+++ D +L   L P      
Sbjct  87   KLNELDLALASKYLALKPHPALSPVLLSSSQSREAEQKYLRLLVDGLLPLLLPPEDLESR  146

Query  111  VLRDFLREILAGVVLESAISNLSRSETINGWIIHL  145
             +R  +REILA +VL   I+ LS  + IN  I+ L
Sbjct  147  PVRVLVREILACLVLLPVINKLSDPDFINELIVKL  181


>CDD:462541 pfam08628, Nexin_C, Sorting nexin C terminal.  This region is 
found a the C terminal of proteins belonging to the sorting 
nexin family. It is found on proteins which also contain pfam00787.
Length=111

 Score = 107 bits (269),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 44/117 (38%), Positives = 62/117 (53%), Gaps = 7/117 (6%)

Query  665  WNIRRTLLNAAKSYILRPGSPSLETIRSLLQESMIDANISDASIASYLTKLRENVLPTKE  724
            W +RR  LNA K  + +      +TI   L+ES ++   S+  +ASY+  LR+ + P   
Sbjct  1    W-LRRRALNALKQVLQQLLG---DTIERKLRES-VEWLTSEEQVASYIRLLRDALWPG-G  54

Query  725  ELESWPQPPSSVEKERMREIARKTLVLKGLPQALTSVMGAAASRESLERVFDCLQVE  781
             L   P   +  EK R R+ ARK L L  +P AL SV+G   +RE+  RVFD LQ  
Sbjct  55   LLAEPPPERTEEEKLRTRKEARKLL-LSLIPDALGSVVGRENAREAARRVFDMLQNP  110



Lambda      K        H        a         alpha
   0.312    0.129    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1028792464


Query= TCONS_00011369

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460484 pfam02194, PXA, PXA domain. This domain is associated ...  110     2e-28
CDD:462541 pfam08628, Nexin_C, Sorting nexin C terminal. This reg...  107     4e-28


>CDD:460484 pfam02194, PXA, PXA domain.  This domain is associated with PX 
domains pfam00787.
Length=181

 Score = 110 bits (277),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 17/155 (11%)

Query  2    FPLSCRKLLRDFIISLSSHLSRKRPADAFLEFLTNSSSMVIVLLNELSA---AFQHVEGR  58
            FP   R+ LR  +  LS  L +   A   L      S ++ +L + L     A + V G+
Sbjct  33   FPNEVRQTLRHALRELSQRLRKVDLASLLL------SRLLPLLTSHLEDYRKAEEAVRGK  86

Query  59   LTPE---DAVKRYLDLHPESSLANIL-----SEQQQRMKLKMVADDILSSFLEPGVYACS  110
               E       +YL L P  +L+ +L     S + ++  L+++ D +L   L P      
Sbjct  87   KLNELDLALASKYLALKPHPALSPVLLSSSQSREAEQKYLRLLVDGLLPLLLPPEDLESR  146

Query  111  VLRDFLREILAGVVLESAISNLSRSETINGWIIHL  145
             +R  +REILA +VL   I+ LS  + IN  I+ L
Sbjct  147  PVRVLVREILACLVLLPVINKLSDPDFINELIVKL  181


>CDD:462541 pfam08628, Nexin_C, Sorting nexin C terminal.  This region is 
found a the C terminal of proteins belonging to the sorting 
nexin family. It is found on proteins which also contain pfam00787.
Length=111

 Score = 107 bits (269),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 44/117 (38%), Positives = 62/117 (53%), Gaps = 7/117 (6%)

Query  665  WNIRRTLLNAAKSYILRPGSPSLETIRSLLQESMIDANISDASIASYLTKLRENVLPTKE  724
            W +RR  LNA K  + +      +TI   L+ES ++   S+  +ASY+  LR+ + P   
Sbjct  1    W-LRRRALNALKQVLQQLLG---DTIERKLRES-VEWLTSEEQVASYIRLLRDALWPG-G  54

Query  725  ELESWPQPPSSVEKERMREIARKTLVLKGLPQALTSVMGAAASRESLERVFDCLQVE  781
             L   P   +  EK R R+ ARK L L  +P AL SV+G   +RE+  RVFD LQ  
Sbjct  55   LLAEPPPERTEEEKLRTRKEARKLL-LSLIPDALGSVVGRENAREAARRVFDMLQNP  110



Lambda      K        H        a         alpha
   0.312    0.129    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1028792464


Query= TCONS_00011370

Length=981
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462541 pfam08628, Nexin_C, Sorting nexin C terminal. This reg...  107     3e-28
CDD:460484 pfam02194, PXA, PXA domain. This domain is associated ...  107     4e-27


>CDD:462541 pfam08628, Nexin_C, Sorting nexin C terminal.  This region is 
found a the C terminal of proteins belonging to the sorting 
nexin family. It is found on proteins which also contain pfam00787.
Length=111

 Score = 107 bits (270),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 44/117 (38%), Positives = 62/117 (53%), Gaps = 7/117 (6%)

Query  845  WNIRRTLLNAAKSYILRPGSPSLETIRSLLQESMIDANISDASIASYLTKLRENVLPTKE  904
            W +RR  LNA K  + +      +TI   L+ES ++   S+  +ASY+  LR+ + P   
Sbjct  1    W-LRRRALNALKQVLQQLLG---DTIERKLRES-VEWLTSEEQVASYIRLLRDALWPG-G  54

Query  905  ELESWPQPPSSVEKERMREIARKTLVLKGLPQALTSVMGAAASRESLERVFDCLQVE  961
             L   P   +  EK R R+ ARK L L  +P AL SV+G   +RE+  RVFD LQ  
Sbjct  55   LLAEPPPERTEEEKLRTRKEARKLL-LSLIPDALGSVVGRENAREAARRVFDMLQNP  110


>CDD:460484 pfam02194, PXA, PXA domain.  This domain is associated with PX 
domains pfam00787.
Length=181

 Score = 107 bits (269),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 49/184 (27%), Positives = 82/184 (45%), Gaps = 31/184 (17%)

Query  170  PPKTAAALRSLTDAVIKDYVK--YVRIT---------------YVSARSDRIQVTDAFLE  212
             P+  AAL  L D +I+D+V+  Y +I+                +   S R++  D    
Sbjct  1    SPEVDAALDELIDLIIRDFVQSWYSKISSDPEFPNEVRQTLRHALRELSQRLRKVD-LAS  59

Query  213  FLTNSSSMVIVLLNELSA---AFQHVEGRLTPE---DAVKRYLDLHPESSLANIL-----  261
             L   S ++ +L + L     A + V G+   E       +YL L P  +L+ +L     
Sbjct  60   LLL--SRLLPLLTSHLEDYRKAEEAVRGKKLNELDLALASKYLALKPHPALSPVLLSSSQ  117

Query  262  SEQQQRMKLKMVADDILSSFLEPGVYACSVLRDFLREILAGVVLESAISNLSRSETINGW  321
            S + ++  L+++ D +L   L P       +R  +REILA +VL   I+ LS  + IN  
Sbjct  118  SREAEQKYLRLLVDGLLPLLLPPEDLESRPVRVLVREILACLVLLPVINKLSDPDFINEL  177

Query  322  IIHL  325
            I+ L
Sbjct  178  IVKL  181



Lambda      K        H        a         alpha
   0.312    0.129    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1253050260


Query= TCONS_00011372

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460501 pfam02229, PC4, Transcriptional Coactivator p15 (PC4)....  95.6    2e-27


>CDD:460501 pfam02229, PC4, Transcriptional Coactivator p15 (PC4).  p15 has 
a bipartite structure composed of an amino-terminal regulatory 
domain and a carboxy-terminal cryptic DNA-binding domain. 
The DNA-binding activity of the carboxy-terminal is disguised 
by the amino-terminal p15 domain. Activity is controlled 
by protein kinases that target the regulatory domain.
Length=52

 Score = 95.6 bits (239),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 34/50 (68%), Positives = 41/50 (82%), Gaps = 0/50 (0%)

Query  56   WELSKMRRVTISSFRGKTLVNIREYYEKDGQELPGKKGISLPIDQFSVLV  105
            WELSK RRVT+  F+GKTLV+IREYYEKDG+  PGKKGISL ++Q+  L 
Sbjct  1    WELSKKRRVTVREFKGKTLVDIREYYEKDGELKPGKKGISLTLEQWKALK  50



Lambda      K        H        a         alpha
   0.308    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00011373

Length=98
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460501 pfam02229, PC4, Transcriptional Coactivator p15 (PC4)....  74.4    4e-20


>CDD:460501 pfam02229, PC4, Transcriptional Coactivator p15 (PC4).  p15 has 
a bipartite structure composed of an amino-terminal regulatory 
domain and a carboxy-terminal cryptic DNA-binding domain. 
The DNA-binding activity of the carboxy-terminal is disguised 
by the amino-terminal p15 domain. Activity is controlled 
by protein kinases that target the regulatory domain.
Length=52

 Score = 74.4 bits (184),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 29/39 (74%), Positives = 33/39 (85%), Gaps = 0/39 (0%)

Query  56  WELSKMRRVTISSFRGKTLVNIREYYEKDGQELPGKKVI  94
           WELSK RRVT+  F+GKTLV+IREYYEKDG+  PGKK I
Sbjct  1   WELSKKRRVTVREFKGKTLVDIREYYEKDGELKPGKKGI  39



Lambda      K        H        a         alpha
   0.312    0.127    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00011371

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460501 pfam02229, PC4, Transcriptional Coactivator p15 (PC4)....  95.6    2e-27


>CDD:460501 pfam02229, PC4, Transcriptional Coactivator p15 (PC4).  p15 has 
a bipartite structure composed of an amino-terminal regulatory 
domain and a carboxy-terminal cryptic DNA-binding domain. 
The DNA-binding activity of the carboxy-terminal is disguised 
by the amino-terminal p15 domain. Activity is controlled 
by protein kinases that target the regulatory domain.
Length=52

 Score = 95.6 bits (239),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 34/50 (68%), Positives = 41/50 (82%), Gaps = 0/50 (0%)

Query  56   WELSKMRRVTISSFRGKTLVNIREYYEKDGQELPGKKGISLPIDQFSVLV  105
            WELSK RRVT+  F+GKTLV+IREYYEKDG+  PGKKGISL ++Q+  L 
Sbjct  1    WELSKKRRVTVREFKGKTLVDIREYYEKDGELKPGKKGISLTLEQWKALK  50



Lambda      K        H        a         alpha
   0.308    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00017683

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00011374

Length=495


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00011378

Length=495


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00017684

Length=495


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00011375

Length=1130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461228 pfam04212, MIT, MIT (microtubule interacting and trans...  60.2    5e-12


>CDD:461228 pfam04212, MIT, MIT (microtubule interacting and transport) domain. 
 The MIT domain forms an asymmetric three-helix bundle 
and binds ESCRT-III (endosomal sorting complexes required 
for transport) substrates.
Length=66

 Score = 60.2 bits (147),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 34/67 (51%), Gaps = 1/67 (1%)

Query  212  LSKALQKANTAVLLDNAANFEGAMEAYNDACQLLQLVMLRSNGGEDERMKLQEIRDTYML  271
            LSKAL+    AV  DNA N+E A+E Y +A   L L +  +   E  R  L+     Y+ 
Sbjct  1    LSKALELVKKAVEEDNAGNYEEALELYKEALDYLLLALKETKNEER-RELLRAKIAEYLE  59

Query  272  RVTELRR  278
            R  EL+ 
Sbjct  60   RAEELKE  66



Lambda      K        H        a         alpha
   0.309    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1442313854


Query= TCONS_00011376

Length=1130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461228 pfam04212, MIT, MIT (microtubule interacting and trans...  60.2    5e-12


>CDD:461228 pfam04212, MIT, MIT (microtubule interacting and transport) domain. 
 The MIT domain forms an asymmetric three-helix bundle 
and binds ESCRT-III (endosomal sorting complexes required 
for transport) substrates.
Length=66

 Score = 60.2 bits (147),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 34/67 (51%), Gaps = 1/67 (1%)

Query  212  LSKALQKANTAVLLDNAANFEGAMEAYNDACQLLQLVMLRSNGGEDERMKLQEIRDTYML  271
            LSKAL+    AV  DNA N+E A+E Y +A   L L +  +   E  R  L+     Y+ 
Sbjct  1    LSKALELVKKAVEEDNAGNYEEALELYKEALDYLLLALKETKNEER-RELLRAKIAEYLE  59

Query  272  RVTELRR  278
            R  EL+ 
Sbjct  60   RAEELKE  66



Lambda      K        H        a         alpha
   0.309    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0740    0.140     1.90     42.6     43.6 

Effective search space used: 1442313854


Query= TCONS_00011377

Length=495


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00011379

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  169     1e-50
CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain....  124     1e-34


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 169 bits (430),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 94/268 (35%), Positives = 119/268 (44%), Gaps = 62/268 (23%)

Query  181  ALLRKANDISAKAHIAAIKASQTAVNEREIEGAFI-ATCIANGAREQSYHPIVACGENGA  239
             L+RKA  I+A A  AA+ A +  V ERE+      A     GAR  ++ PIVA G N A
Sbjct  1    ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGGARGPAFPPIVASGPNAA  60

Query  240  TLHYGKNDDTLIDPVTNQKKRNVLIDAGGEY-RTYCADITRVIPVGGKFTAETRQIYDIV  298
              HY  ND  L      +    VLID G EY   YC+DITR   VG K + E R++Y+ V
Sbjct  61   IPHYIPNDRVL------KPGDLVLIDVGAEYDGGYCSDITRTFVVG-KPSPEQRELYEAV  113

Query  299  LQMQTECIAMLKEGVQWEDVHAHAHRVAIRGLLKLGILRGAEDEIFEKRVSVAFFPHGLG  358
            L+ Q   IA +K GV   DV A A  V        G+                +FPHGLG
Sbjct  114  LEAQEAAIAAVKPGVTGGDVDAAAREVLEEA----GLG--------------EYFPHGLG  155

Query  359  HYLGMDTHDTGGNPNYADKDTMFRYLRVRGRLPAGSVITVEPGVYFCRFIIEPYIKSPES  418
            H +G++ H+    P  +              L  G V T+EPG+YF           P  
Sbjct  156  HGIGLEVHE---GPYISRGGD-------DRVLEPGMVFTIEPGIYF----------IPG-  194

Query  419  NKYIDTNVLDRYWRVGGVRIEDNVLVTK  446
                           GGVRIED VLVT+
Sbjct  195  --------------WGGVRIEDTVLVTE  208


>CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain.  This 
domain is structurally very similar to the creatinase N-terminal 
domain (pfam01321). However, little or no sequence similarity 
exists between the two families.
Length=121

 Score = 124 bits (313),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 55/120 (46%), Gaps = 6/120 (5%)

Query  18   HARRVAESLQSYRNGCPGIVYLEAQKTRLIEDNDEPAPFRQRRPFFYLSGCPLPDSCLVY  77
            +A R A  L         +  L     +     D   PFRQ   F+YL+G   PD+ LV 
Sbjct  1    YAERRARLLAKLPPN--SVAILPGAPEKYRNG-DVFYPFRQDSDFYYLTGFNEPDAVLVL  57

Query  78   ---DLSEDQLTLFIPPVDPEDVIWSGLPMSTEEAQNQYDVDRVLVTTELNSTLASIVSSH  134
               D+   + TLF+PP DPED IW G  +  EEA+  + VD V    EL+  L  ++   
Sbjct  58   EGGDIDSGKETLFVPPKDPEDEIWDGPRLGPEEAKELFGVDEVYPIDELDEVLPKLLKGR  117



Lambda      K        H        a         alpha
   0.319    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00011380

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  153     4e-45
CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain....  124     2e-35


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 153 bits (389),  Expect = 4e-45, Method: Composition-based stats.
 Identities = 80/224 (36%), Positives = 104/224 (46%), Gaps = 37/224 (17%)

Query  181  ALLRKANDISAKAHIAAIKASQTAVNEREIEGAFI-ATCIANGAREQSYHPIVACGENGA  239
             L+RKA  I+A A  AA+ A +  V ERE+      A     GAR  ++ PIVA G N A
Sbjct  1    ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGGARGPAFPPIVASGPNAA  60

Query  240  TLHYGKNDDTLIDPVTNQKKRNVLIDAGGEY-RTYCADITRVIPVGGKFTAETRQIYDIV  298
              HY  ND  L      +    VLID G EY   YC+DITR   VG K + E R++Y+ V
Sbjct  61   IPHYIPNDRVL------KPGDLVLIDVGAEYDGGYCSDITRTFVVG-KPSPEQRELYEAV  113

Query  299  LQMQTECIAMLKEGVQWEDVHAHAHRVAIRGLLKLGILRGAEDEIFEKRVSVAFFPHGLG  358
            L+ Q   IA +K GV   DV A A  V        G+                +FPHGLG
Sbjct  114  LEAQEAAIAAVKPGVTGGDVDAAAREVLEEA----GLG--------------EYFPHGLG  155

Query  359  HYLGMDTHDTGGNPNYADKDTMFRYLRVRGRLPAGSVITVEPGV  402
            H +G++ H+    P  +              L  G V T+EPG+
Sbjct  156  HGIGLEVHE---GPYISRGGD-------DRVLEPGMVFTIEPGI  189


>CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain.  This 
domain is structurally very similar to the creatinase N-terminal 
domain (pfam01321). However, little or no sequence similarity 
exists between the two families.
Length=121

 Score = 124 bits (315),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 55/120 (46%), Gaps = 6/120 (5%)

Query  18   HARRVAESLQSYRNGCPGIVYLEAQKTRLIEDNDEPAPFRQRRPFFYLSGCPLPDSCLVY  77
            +A R A  L         +  L     +     D   PFRQ   F+YL+G   PD+ LV 
Sbjct  1    YAERRARLLAKLPPN--SVAILPGAPEKYRNG-DVFYPFRQDSDFYYLTGFNEPDAVLVL  57

Query  78   ---DLSEDQLTLFIPPVDPEDVIWSGLPMSTEEAQNQYDVDRVLVTTELNSTLASIVSSH  134
               D+   + TLF+PP DPED IW G  +  EEA+  + VD V    EL+  L  ++   
Sbjct  58   EGGDIDSGKETLFVPPKDPEDEIWDGPRLGPEEAKELFGVDEVYPIDELDEVLPKLLKGR  117



Lambda      K        H        a         alpha
   0.319    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00017685

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  128     5e-36
CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain....  124     1e-35


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 128 bits (325),  Expect = 5e-36, Method: Composition-based stats.
 Identities = 74/204 (36%), Positives = 95/204 (47%), Gaps = 27/204 (13%)

Query  181  ALLRKANDISAKAHIAAIKASQTAVNEREIEGAFI-ATCIANGAREQSYHPIVACGENGA  239
             L+RKA  I+A A  AA+ A +  V ERE+      A     GAR  ++ PIVA G N A
Sbjct  1    ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGGARGPAFPPIVASGPNAA  60

Query  240  TLHYGKNDDTLIDPVTNQKKRNVLIDAGGEY-RTYCADITRVIPVGGKFTAETRQIYDIV  298
              HY  ND  L      +    VLID G EY   YC+DITR   VG K + E R++Y+ V
Sbjct  61   IPHYIPNDRVL------KPGDLVLIDVGAEYDGGYCSDITRTFVVG-KPSPEQRELYEAV  113

Query  299  LQMQTECIAMLKEGVQWEDVHAHAHRVAIR-GLLK---------LGILRGAEDEIFEKRD  348
            L+ Q   IA +K GV   DV A A  V    GL +         +G+      E+ E   
Sbjct  114  LEAQEAAIAAVKPGVTGGDVDAAAREVLEEAGLGEYFPHGLGHGIGL------EVHE--G  165

Query  349  TMFRYLRVRGRLPAGSVITVEPGV  372
                       L  G V T+EPG+
Sbjct  166  PYISRGGDDRVLEPGMVFTIEPGI  189


>CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain.  This 
domain is structurally very similar to the creatinase N-terminal 
domain (pfam01321). However, little or no sequence similarity 
exists between the two families.
Length=121

 Score = 124 bits (315),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 55/120 (46%), Gaps = 6/120 (5%)

Query  18   HARRVAESLQSYRNGCPGIVYLEAQKTRLIEDNDEPAPFRQRRPFFYLSGCPLPDSCLVY  77
            +A R A  L         +  L     +     D   PFRQ   F+YL+G   PD+ LV 
Sbjct  1    YAERRARLLAKLPPN--SVAILPGAPEKYRNG-DVFYPFRQDSDFYYLTGFNEPDAVLVL  57

Query  78   ---DLSEDQLTLFIPPVDPEDVIWSGLPMSTEEAQNQYDVDRVLVTTELNSTLASIVSSH  134
               D+   + TLF+PP DPED IW G  +  EEA+  + VD V    EL+  L  ++   
Sbjct  58   EGGDIDSGKETLFVPPKDPEDEIWDGPRLGPEEAKELFGVDEVYPIDELDEVLPKLLKGR  117



Lambda      K        H        a         alpha
   0.320    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00017686

Length=366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  166     2e-50


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 166 bits (422),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 94/268 (35%), Positives = 119/268 (44%), Gaps = 62/268 (23%)

Query  79   ALLRKANDISAKAHIAAIKASQTAVNEREIEGAFI-ATCIANGAREQSYHPIVACGENGA  137
             L+RKA  I+A A  AA+ A +  V ERE+      A     GAR  ++ PIVA G N A
Sbjct  1    ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGGARGPAFPPIVASGPNAA  60

Query  138  TLHYGKNDDTLIDPVTNQKKRNVLIDAGGEY-RTYCADITRVIPVGGKFTAETRQIYDIV  196
              HY  ND  L      +    VLID G EY   YC+DITR   VG K + E R++Y+ V
Sbjct  61   IPHYIPNDRVL------KPGDLVLIDVGAEYDGGYCSDITRTFVVG-KPSPEQRELYEAV  113

Query  197  LQMQTECIAMLKEGVQWEDVHAHAHRVAIRGLLKLGILRGAEDEIFEKRVSVAFFPHGLG  256
            L+ Q   IA +K GV   DV A A  V        G+                +FPHGLG
Sbjct  114  LEAQEAAIAAVKPGVTGGDVDAAAREVLEEA----GLG--------------EYFPHGLG  155

Query  257  HYLGMDTHDTGGNPNYADKDTMFRYLRVRGRLPAGSVITVEPGVYFCRFIIEPYIKSPES  316
            H +G++ H+    P  +              L  G V T+EPG+YF           P  
Sbjct  156  HGIGLEVHE---GPYISRGGD-------DRVLEPGMVFTIEPGIYF----------IPG-  194

Query  317  NKYIDTNVLDRYWRVGGVRIEDNVLVTK  344
                           GGVRIED VLVT+
Sbjct  195  --------------WGGVRIEDTVLVTE  208



Lambda      K        H        a         alpha
   0.318    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00011381

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  169     1e-50
CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain....  124     1e-34


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 169 bits (430),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 94/268 (35%), Positives = 119/268 (44%), Gaps = 62/268 (23%)

Query  181  ALLRKANDISAKAHIAAIKASQTAVNEREIEGAFI-ATCIANGAREQSYHPIVACGENGA  239
             L+RKA  I+A A  AA+ A +  V ERE+      A     GAR  ++ PIVA G N A
Sbjct  1    ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGGARGPAFPPIVASGPNAA  60

Query  240  TLHYGKNDDTLIDPVTNQKKRNVLIDAGGEY-RTYCADITRVIPVGGKFTAETRQIYDIV  298
              HY  ND  L      +    VLID G EY   YC+DITR   VG K + E R++Y+ V
Sbjct  61   IPHYIPNDRVL------KPGDLVLIDVGAEYDGGYCSDITRTFVVG-KPSPEQRELYEAV  113

Query  299  LQMQTECIAMLKEGVQWEDVHAHAHRVAIRGLLKLGILRGAEDEIFEKRVSVAFFPHGLG  358
            L+ Q   IA +K GV   DV A A  V        G+                +FPHGLG
Sbjct  114  LEAQEAAIAAVKPGVTGGDVDAAAREVLEEA----GLG--------------EYFPHGLG  155

Query  359  HYLGMDTHDTGGNPNYADKDTMFRYLRVRGRLPAGSVITVEPGVYFCRFIIEPYIKSPES  418
            H +G++ H+    P  +              L  G V T+EPG+YF           P  
Sbjct  156  HGIGLEVHE---GPYISRGGD-------DRVLEPGMVFTIEPGIYF----------IPG-  194

Query  419  NKYIDTNVLDRYWRVGGVRIEDNVLVTK  446
                           GGVRIED VLVT+
Sbjct  195  --------------WGGVRIEDTVLVTE  208


>CDD:461581 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain.  This 
domain is structurally very similar to the creatinase N-terminal 
domain (pfam01321). However, little or no sequence similarity 
exists between the two families.
Length=121

 Score = 124 bits (313),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 55/120 (46%), Gaps = 6/120 (5%)

Query  18   HARRVAESLQSYRNGCPGIVYLEAQKTRLIEDNDEPAPFRQRRPFFYLSGCPLPDSCLVY  77
            +A R A  L         +  L     +     D   PFRQ   F+YL+G   PD+ LV 
Sbjct  1    YAERRARLLAKLPPN--SVAILPGAPEKYRNG-DVFYPFRQDSDFYYLTGFNEPDAVLVL  57

Query  78   ---DLSEDQLTLFIPPVDPEDVIWSGLPMSTEEAQNQYDVDRVLVTTELNSTLASIVSSH  134
               D+   + TLF+PP DPED IW G  +  EEA+  + VD V    EL+  L  ++   
Sbjct  58   EGGDIDSGKETLFVPPKDPEDEIWDGPRLGPEEAKELFGVDEVYPIDELDEVLPKLLKGR  117



Lambda      K        H        a         alpha
   0.319    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00011382

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.136    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00017687

Length=662
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain. M...  182     6e-54
CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, ...  176     4e-53
CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal dom...  110     3e-28


>CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain.  Members 
of this family are aminopeptidases. The members differ widely 
in specificity, hydrolysing acidic, basic or neutral N-terminal 
residues. This family includes leukotriene-A4 hydrolase, 
this enzyme also has an aminopeptidase activity.
Length=219

 Score = 182 bits (464),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 67/235 (29%), Positives = 99/235 (42%), Gaps = 32/235 (14%)

Query  281  WELEADTEKFINAIEKIVYPYVWGEYNVLILPPSFPYGGMENPIFTFATP---------S  331
            + LE   +      +    PY   +Y+++ LP  F  G MEN                 S
Sbjct  1    YALEITVKLLEFYEDYFNIPYPLPKYDLVALP-DFSAGAMENWGLITYRETLLLYDPGNS  59

Query  332  IISKDRENIDVIAHELAHSWSGNLVTNASWEHFWLNEGWTTYLERRIVAAVHGE--PYRH  389
              S  +    VIAHELAH W GNLVT   W+  WLNEG+ TY+E     A+  E   +  
Sbjct  60   STSDKQRVASVIAHELAHQWFGNLVTMKWWDDLWLNEGFATYMEYLGTDALFPEWNIWEQ  119

Query  390  FSAIIGWKAL-TDSVEHFGPEHDFTKLITNLKGMDPDDAFSSIPYEKGFNFLFHLENLVG  448
            F       A+  D++      H  T+ +      + DD F +IPYEKG + L  LE L+G
Sbjct  120  FLLDEVQNAMARDAL---DSSHPITQNVN--DPSEIDDIFDAIPYEKGASVLRMLETLLG  174

Query  449  KSKFDRFIPHYFNKYKGKSLDSYEFKSTILDFFKDDSDASTALNELD----WDSW  499
            +  F + +  Y  K++  +  + +    +          S A   LD     D+W
Sbjct  175  EEVFQKGLRSYLKKFQYGNATTEDLWDAL----------SEASGPLDVDSFMDTW  219


>CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, C-terminal. 
 Members of this family adopt a structure consisting of 
two layers of parallel alpha-helices, five in the inner layer 
and four in the outer, arranged in an antiparallel manner, 
with perpendicular loops containing short helical segments 
on top. They are required for the formation of a deep cleft 
harbouring the catalytic Zn2+ site in Leukotriene A4 hydrolase.
Length=112

 Score = 176 bits (448),  Expect = 4e-53, Method: Composition-based stats.
 Identities = 58/113 (51%), Positives = 78/113 (69%), Gaps = 1/113 (1%)

Query  544  LTANQVVVFLEQILVSERQLTPELSKLMGEIYGLAASQNIEVANLYFQVGLQAGDASVVE  603
             ++NQ VVFLE++L     L+PE  K + E+Y L+ S+N E+   + ++ L+A       
Sbjct  1    WSSNQKVVFLERLL-EFSPLSPEQLKALDEVYKLSESKNAEIRFRWLRLALKAKYEPAYP  59

Query  604  PTADLLGKIGRMKFVRPLYRKLAKFDRKRALDTFEKHKGFYHPICRAMVEKDL  656
              A+ LG++GRMKFVRPLYR L K DR  A++TFEK+K FYHPICRAMVEKDL
Sbjct  60   EVAEFLGEVGRMKFVRPLYRALNKVDRDLAVETFEKNKDFYHPICRAMVEKDL  112


>CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal domain.  This 
domain is found at the N-terminus of aminopeptidases from 
the M1 family.
Length=186

 Score = 110 bits (276),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 44/194 (23%), Positives = 78/194 (40%), Gaps = 17/194 (9%)

Query  66   VSTHITANFDILFDQRKLAGNVIHRFRSTTDGESNHIILDTNHLDIGSVKVNGQPS----  121
            V  H   +  I       +G+V    +      +N I+L  + L I S+ ++ + +    
Sbjct  1    VPEHYDLDLKIDLKNFTFSGSVTITLQLNN--ATNVIVLHASDLTIRSISLSDEVTSDGV  58

Query  122  --EWEYLPRLEPYGTPLKIKLDQGVKLNE--TIEVDISVQTTEKCTALQWLTPAQTSNKK  177
              ++    +       L I L + +      T+E++ S +  +  T     T    + +K
Sbjct  59   PADFTEDQKDGEK---LTIVLPETLNQTGPYTLEIEYSGELNDSMTGFYRST-YTDNGEK  114

Query  178  HPYMFSQCQAIHARSIFPCQDTPDVKCTLDFNITSPLPVIA-SGLPVRGSSEAPKSDGKT  236
               + +Q +   ARS FPC D P VK T   +I  P    A S +PV   +  P  +G  
Sbjct  115  KVLVTTQFEPTDARSAFPCFDEPSVKATFTISIIHPKDYTALSNMPVI--ASEPLENGWV  172

Query  237  LYKFHQKVPIPSYL  250
            +  F Q   + +YL
Sbjct  173  ITTFEQTPKMSTYL  186



Lambda      K        H        a         alpha
   0.319    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 839155510


Query= TCONS_00011383

Length=662
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain. M...  182     6e-54
CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, ...  176     4e-53
CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal dom...  110     3e-28


>CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain.  Members 
of this family are aminopeptidases. The members differ widely 
in specificity, hydrolysing acidic, basic or neutral N-terminal 
residues. This family includes leukotriene-A4 hydrolase, 
this enzyme also has an aminopeptidase activity.
Length=219

 Score = 182 bits (464),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 67/235 (29%), Positives = 99/235 (42%), Gaps = 32/235 (14%)

Query  281  WELEADTEKFINAIEKIVYPYVWGEYNVLILPPSFPYGGMENPIFTFATP---------S  331
            + LE   +      +    PY   +Y+++ LP  F  G MEN                 S
Sbjct  1    YALEITVKLLEFYEDYFNIPYPLPKYDLVALP-DFSAGAMENWGLITYRETLLLYDPGNS  59

Query  332  IISKDRENIDVIAHELAHSWSGNLVTNASWEHFWLNEGWTTYLERRIVAAVHGE--PYRH  389
              S  +    VIAHELAH W GNLVT   W+  WLNEG+ TY+E     A+  E   +  
Sbjct  60   STSDKQRVASVIAHELAHQWFGNLVTMKWWDDLWLNEGFATYMEYLGTDALFPEWNIWEQ  119

Query  390  FSAIIGWKAL-TDSVEHFGPEHDFTKLITNLKGMDPDDAFSSIPYEKGFNFLFHLENLVG  448
            F       A+  D++      H  T+ +      + DD F +IPYEKG + L  LE L+G
Sbjct  120  FLLDEVQNAMARDAL---DSSHPITQNVN--DPSEIDDIFDAIPYEKGASVLRMLETLLG  174

Query  449  KSKFDRFIPHYFNKYKGKSLDSYEFKSTILDFFKDDSDASTALNELD----WDSW  499
            +  F + +  Y  K++  +  + +    +          S A   LD     D+W
Sbjct  175  EEVFQKGLRSYLKKFQYGNATTEDLWDAL----------SEASGPLDVDSFMDTW  219


>CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, C-terminal. 
 Members of this family adopt a structure consisting of 
two layers of parallel alpha-helices, five in the inner layer 
and four in the outer, arranged in an antiparallel manner, 
with perpendicular loops containing short helical segments 
on top. They are required for the formation of a deep cleft 
harbouring the catalytic Zn2+ site in Leukotriene A4 hydrolase.
Length=112

 Score = 176 bits (448),  Expect = 4e-53, Method: Composition-based stats.
 Identities = 58/113 (51%), Positives = 78/113 (69%), Gaps = 1/113 (1%)

Query  544  LTANQVVVFLEQILVSERQLTPELSKLMGEIYGLAASQNIEVANLYFQVGLQAGDASVVE  603
             ++NQ VVFLE++L     L+PE  K + E+Y L+ S+N E+   + ++ L+A       
Sbjct  1    WSSNQKVVFLERLL-EFSPLSPEQLKALDEVYKLSESKNAEIRFRWLRLALKAKYEPAYP  59

Query  604  PTADLLGKIGRMKFVRPLYRKLAKFDRKRALDTFEKHKGFYHPICRAMVEKDL  656
              A+ LG++GRMKFVRPLYR L K DR  A++TFEK+K FYHPICRAMVEKDL
Sbjct  60   EVAEFLGEVGRMKFVRPLYRALNKVDRDLAVETFEKNKDFYHPICRAMVEKDL  112


>CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal domain.  This 
domain is found at the N-terminus of aminopeptidases from 
the M1 family.
Length=186

 Score = 110 bits (276),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 44/194 (23%), Positives = 78/194 (40%), Gaps = 17/194 (9%)

Query  66   VSTHITANFDILFDQRKLAGNVIHRFRSTTDGESNHIILDTNHLDIGSVKVNGQPS----  121
            V  H   +  I       +G+V    +      +N I+L  + L I S+ ++ + +    
Sbjct  1    VPEHYDLDLKIDLKNFTFSGSVTITLQLNN--ATNVIVLHASDLTIRSISLSDEVTSDGV  58

Query  122  --EWEYLPRLEPYGTPLKIKLDQGVKLNE--TIEVDISVQTTEKCTALQWLTPAQTSNKK  177
              ++    +       L I L + +      T+E++ S +  +  T     T    + +K
Sbjct  59   PADFTEDQKDGEK---LTIVLPETLNQTGPYTLEIEYSGELNDSMTGFYRST-YTDNGEK  114

Query  178  HPYMFSQCQAIHARSIFPCQDTPDVKCTLDFNITSPLPVIA-SGLPVRGSSEAPKSDGKT  236
               + +Q +   ARS FPC D P VK T   +I  P    A S +PV   +  P  +G  
Sbjct  115  KVLVTTQFEPTDARSAFPCFDEPSVKATFTISIIHPKDYTALSNMPVI--ASEPLENGWV  172

Query  237  LYKFHQKVPIPSYL  250
            +  F Q   + +YL
Sbjct  173  ITTFEQTPKMSTYL  186



Lambda      K        H        a         alpha
   0.319    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 839155510


Query= TCONS_00017688

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain. M...  181     6e-54
CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal dom...  109     3e-28
CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, ...  105     1e-27


>CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain.  Members 
of this family are aminopeptidases. The members differ widely 
in specificity, hydrolysing acidic, basic or neutral N-terminal 
residues. This family includes leukotriene-A4 hydrolase, 
this enzyme also has an aminopeptidase activity.
Length=219

 Score = 181 bits (462),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 67/235 (29%), Positives = 99/235 (42%), Gaps = 32/235 (14%)

Query  281  WELEADTEKFINAIEKIVYPYVWGEYNVLILPPSFPYGGMENPIFTFATP---------S  331
            + LE   +      +    PY   +Y+++ LP  F  G MEN                 S
Sbjct  1    YALEITVKLLEFYEDYFNIPYPLPKYDLVALP-DFSAGAMENWGLITYRETLLLYDPGNS  59

Query  332  IISKDRENIDVIAHELAHSWSGNLVTNASWEHFWLNEGWTTYLERRIVAAVHGE--PYRH  389
              S  +    VIAHELAH W GNLVT   W+  WLNEG+ TY+E     A+  E   +  
Sbjct  60   STSDKQRVASVIAHELAHQWFGNLVTMKWWDDLWLNEGFATYMEYLGTDALFPEWNIWEQ  119

Query  390  FSAIIGWKAL-TDSVEHFGPEHDFTKLITNLKGMDPDDAFSSIPYEKGFNFLFHLENLVG  448
            F       A+  D++      H  T+ +      + DD F +IPYEKG + L  LE L+G
Sbjct  120  FLLDEVQNAMARDAL---DSSHPITQNVN--DPSEIDDIFDAIPYEKGASVLRMLETLLG  174

Query  449  KSKFDRFIPHYFNKYKGKSLDSYEFKSTILDFFKDDSDASTALNELD----WDSW  499
            +  F + +  Y  K++  +  + +    +          S A   LD     D+W
Sbjct  175  EEVFQKGLRSYLKKFQYGNATTEDLWDAL----------SEASGPLDVDSFMDTW  219


>CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal domain.  This 
domain is found at the N-terminus of aminopeptidases from 
the M1 family.
Length=186

 Score = 109 bits (275),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 44/194 (23%), Positives = 78/194 (40%), Gaps = 17/194 (9%)

Query  66   VSTHITANFDILFDQRKLAGNVIHRFRSTTDGESNHIILDTNHLDIGSVKVNGQPS----  121
            V  H   +  I       +G+V    +      +N I+L  + L I S+ ++ + +    
Sbjct  1    VPEHYDLDLKIDLKNFTFSGSVTITLQLNN--ATNVIVLHASDLTIRSISLSDEVTSDGV  58

Query  122  --EWEYLPRLEPYGTPLKIKLDQGVKLNE--TIEVDISVQTTEKCTALQWLTPAQTSNKK  177
              ++    +       L I L + +      T+E++ S +  +  T     T    + +K
Sbjct  59   PADFTEDQKDGEK---LTIVLPETLNQTGPYTLEIEYSGELNDSMTGFYRST-YTDNGEK  114

Query  178  HPYMFSQCQAIHARSIFPCQDTPDVKCTLDFNITSPLPVIA-SGLPVRGSSEAPKSDGKT  236
               + +Q +   ARS FPC D P VK T   +I  P    A S +PV   +  P  +G  
Sbjct  115  KVLVTTQFEPTDARSAFPCFDEPSVKATFTISIIHPKDYTALSNMPVI--ASEPLENGWV  172

Query  237  LYKFHQKVPIPSYL  250
            +  F Q   + +YL
Sbjct  173  ITTFEQTPKMSTYL  186


>CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, C-terminal. 
 Members of this family adopt a structure consisting of 
two layers of parallel alpha-helices, five in the inner layer 
and four in the outer, arranged in an antiparallel manner, 
with perpendicular loops containing short helical segments 
on top. They are required for the formation of a deep cleft 
harbouring the catalytic Zn2+ site in Leukotriene A4 hydrolase.
Length=112

 Score = 105 bits (265),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 49/78 (63%), Gaps = 1/78 (1%)

Query  544  LTANQVVVFLEQILVSERQLTPELSKLMGEIYGLAASQNIEVANLYFQVGLQAGDASVVE  603
             ++NQ VVFLE++L     L+PE  K + E+Y L+ S+N E+   + ++ L+A       
Sbjct  1    WSSNQKVVFLERLL-EFSPLSPEQLKALDEVYKLSESKNAEIRFRWLRLALKAKYEPAYP  59

Query  604  PTADLLGKIGRMKFVRPL  621
              A+ LG++GRMKFVRPL
Sbjct  60   EVAEFLGEVGRMKFVRPL  77



Lambda      K        H        a         alpha
   0.319    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790552412


Query= TCONS_00017689

Length=614
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, ...  176     2e-53
CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain. M...  176     5e-52
CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal dom...  110     3e-28


>CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, C-terminal. 
 Members of this family adopt a structure consisting of 
two layers of parallel alpha-helices, five in the inner layer 
and four in the outer, arranged in an antiparallel manner, 
with perpendicular loops containing short helical segments 
on top. They are required for the formation of a deep cleft 
harbouring the catalytic Zn2+ site in Leukotriene A4 hydrolase.
Length=112

 Score = 176 bits (449),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 58/113 (51%), Positives = 78/113 (69%), Gaps = 1/113 (1%)

Query  496  LTANQVVVFLEQILVSERQLTPELSKLMGEIYGLAASQNIEVANLYFQVGLQAGDASVVE  555
             ++NQ VVFLE++L     L+PE  K + E+Y L+ S+N E+   + ++ L+A       
Sbjct  1    WSSNQKVVFLERLL-EFSPLSPEQLKALDEVYKLSESKNAEIRFRWLRLALKAKYEPAYP  59

Query  556  PTADLLGKIGRMKFVRPLYRKLAKFDRKRALDTFEKHKGFYHPICRAMVEKDL  608
              A+ LG++GRMKFVRPLYR L K DR  A++TFEK+K FYHPICRAMVEKDL
Sbjct  60   EVAEFLGEVGRMKFVRPLYRALNKVDRDLAVETFEKNKDFYHPICRAMVEKDL  112


>CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain.  Members 
of this family are aminopeptidases. The members differ widely 
in specificity, hydrolysing acidic, basic or neutral N-terminal 
residues. This family includes leukotriene-A4 hydrolase, 
this enzyme also has an aminopeptidase activity.
Length=219

 Score = 176 bits (448),  Expect = 5e-52, Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 95/235 (40%), Gaps = 35/235 (15%)

Query  236  WELEADTEKFINAIEKIVYPYVWGEYNVLILPPSFPYGGMENPIFTFATP---------S  286
            + LE   +      +    PY   +Y+++ LP  F  G MEN                 S
Sbjct  1    YALEITVKLLEFYEDYFNIPYPLPKYDLVALP-DFSAGAMENWGLITYRETLLLYDPGNS  59

Query  287  IISKDRENIDVIAHELAHSWSGNLVTNASWEHFWLNEGWTTYLERR-LRHGEPYRHFSAI  345
              S  +    VIAHELAH W GNLVT   W+  WLNEG+ TY+E        P  +    
Sbjct  60   STSDKQRVASVIAHELAHQWFGNLVTMKWWDDLWLNEGFATYMEYLGTDALFPEWNIWEQ  119

Query  346  IGWKALT-----DSVEHFGPEHDFTKLITNLKGMDPDDAFSSIPYEKGFNFLFHLENLVG  400
                 +      D++      H  T+ +      + DD F +IPYEKG + L  LE L+G
Sbjct  120  FLLDEVQNAMARDAL---DSSHPITQNVN--DPSEIDDIFDAIPYEKGASVLRMLETLLG  174

Query  401  KSKFDRFIPHYFNKYKGKSLDSYEFKSTILDFFKDDSDASTALNELD----WDSW  451
            +  F + +  Y  K++  +  + +    +          S A   LD     D+W
Sbjct  175  EEVFQKGLRSYLKKFQYGNATTEDLWDAL----------SEASGPLDVDSFMDTW  219


>CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal domain.  This 
domain is found at the N-terminus of aminopeptidases from 
the M1 family.
Length=186

 Score = 110 bits (276),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 44/194 (23%), Positives = 78/194 (40%), Gaps = 17/194 (9%)

Query  21   VSTHITANFDILFDQRKLAGNVIHRFRSTTDGESNHIILDTNHLDIGSVKVNGQPS----  76
            V  H   +  I       +G+V    +      +N I+L  + L I S+ ++ + +    
Sbjct  1    VPEHYDLDLKIDLKNFTFSGSVTITLQLNN--ATNVIVLHASDLTIRSISLSDEVTSDGV  58

Query  77   --EWEYLPRLEPYGTPLKIKLDQGVKLNE--TIEVDISVQTTEKCTALQWLTPAQTSNKK  132
              ++    +       L I L + +      T+E++ S +  +  T     T    + +K
Sbjct  59   PADFTEDQKDGEK---LTIVLPETLNQTGPYTLEIEYSGELNDSMTGFYRST-YTDNGEK  114

Query  133  HPYMFSQCQAIHARSIFPCQDTPDVKCTLDFNITSPLPVIA-SGLPVRGSSEAPKSDGKT  191
               + +Q +   ARS FPC D P VK T   +I  P    A S +PV   +  P  +G  
Sbjct  115  KVLVTTQFEPTDARSAFPCFDEPSVKATFTISIIHPKDYTALSNMPVI--ASEPLENGWV  172

Query  192  LYKFHQKVPIPSYL  205
            +  F Q   + +YL
Sbjct  173  ITTFEQTPKMSTYL  186



Lambda      K        H        a         alpha
   0.318    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 780091416


Query= TCONS_00011384

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain. M...  181     3e-54
CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal dom...  109     3e-28
CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, ...  105     8e-28


>CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain.  Members 
of this family are aminopeptidases. The members differ widely 
in specificity, hydrolysing acidic, basic or neutral N-terminal 
residues. This family includes leukotriene-A4 hydrolase, 
this enzyme also has an aminopeptidase activity.
Length=219

 Score = 181 bits (462),  Expect = 3e-54, Method: Composition-based stats.
 Identities = 67/235 (29%), Positives = 99/235 (42%), Gaps = 32/235 (14%)

Query  236  WELEADTEKFINAIEKIVYPYVWGEYNVLILPPSFPYGGMENPIFTFATP---------S  286
            + LE   +      +    PY   +Y+++ LP  F  G MEN                 S
Sbjct  1    YALEITVKLLEFYEDYFNIPYPLPKYDLVALP-DFSAGAMENWGLITYRETLLLYDPGNS  59

Query  287  IISKDRENIDVIAHELAHSWSGNLVTNASWEHFWLNEGWTTYLERRIVAAVHGE--PYRH  344
              S  +    VIAHELAH W GNLVT   W+  WLNEG+ TY+E     A+  E   +  
Sbjct  60   STSDKQRVASVIAHELAHQWFGNLVTMKWWDDLWLNEGFATYMEYLGTDALFPEWNIWEQ  119

Query  345  FSAIIGWKAL-TDSVEHFGPEHDFTKLITNLKGMDPDDAFSSIPYEKGFNFLFHLENLVG  403
            F       A+  D++      H  T+ +      + DD F +IPYEKG + L  LE L+G
Sbjct  120  FLLDEVQNAMARDAL---DSSHPITQNVN--DPSEIDDIFDAIPYEKGASVLRMLETLLG  174

Query  404  KSKFDRFIPHYFNKYKGKSLDSYEFKSTILDFFKDDSDASTALNELD----WDSW  454
            +  F + +  Y  K++  +  + +    +          S A   LD     D+W
Sbjct  175  EEVFQKGLRSYLKKFQYGNATTEDLWDAL----------SEASGPLDVDSFMDTW  219


>CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal domain.  This 
domain is found at the N-terminus of aminopeptidases from 
the M1 family.
Length=186

 Score = 109 bits (275),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 44/194 (23%), Positives = 78/194 (40%), Gaps = 17/194 (9%)

Query  21   VSTHITANFDILFDQRKLAGNVIHRFRSTTDGESNHIILDTNHLDIGSVKVNGQPS----  76
            V  H   +  I       +G+V    +      +N I+L  + L I S+ ++ + +    
Sbjct  1    VPEHYDLDLKIDLKNFTFSGSVTITLQLNN--ATNVIVLHASDLTIRSISLSDEVTSDGV  58

Query  77   --EWEYLPRLEPYGTPLKIKLDQGVKLNE--TIEVDISVQTTEKCTALQWLTPAQTSNKK  132
              ++    +       L I L + +      T+E++ S +  +  T     T    + +K
Sbjct  59   PADFTEDQKDGEK---LTIVLPETLNQTGPYTLEIEYSGELNDSMTGFYRST-YTDNGEK  114

Query  133  HPYMFSQCQAIHARSIFPCQDTPDVKCTLDFNITSPLPVIA-SGLPVRGSSEAPKSDGKT  191
               + +Q +   ARS FPC D P VK T   +I  P    A S +PV   +  P  +G  
Sbjct  115  KVLVTTQFEPTDARSAFPCFDEPSVKATFTISIIHPKDYTALSNMPVI--ASEPLENGWV  172

Query  192  LYKFHQKVPIPSYL  205
            +  F Q   + +YL
Sbjct  173  ITTFEQTPKMSTYL  186


>CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, C-terminal. 
 Members of this family adopt a structure consisting of 
two layers of parallel alpha-helices, five in the inner layer 
and four in the outer, arranged in an antiparallel manner, 
with perpendicular loops containing short helical segments 
on top. They are required for the formation of a deep cleft 
harbouring the catalytic Zn2+ site in Leukotriene A4 hydrolase.
Length=112

 Score = 105 bits (265),  Expect = 8e-28, Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 49/78 (63%), Gaps = 1/78 (1%)

Query  499  LTANQVVVFLEQILVSERQLTPELSKLMGEIYGLAASQNIEVANLYFQVGLQAGDASVVE  558
             ++NQ VVFLE++L     L+PE  K + E+Y L+ S+N E+   + ++ L+A       
Sbjct  1    WSSNQKVVFLERLL-EFSPLSPEQLKALDEVYKLSESKNAEIRFRWLRLALKAKYEPAYP  59

Query  559  PTADLLGKIGRMKFVRPL  576
              A+ LG++GRMKFVRPL
Sbjct  60   EVAEFLGEVGRMKFVRPL  77



Lambda      K        H        a         alpha
   0.318    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 723303152


Query= TCONS_00017690

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal dom...  108     5e-30


>CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal domain.  This 
domain is found at the N-terminus of aminopeptidases from 
the M1 family.
Length=186

 Score = 108 bits (273),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 44/194 (23%), Positives = 78/194 (40%), Gaps = 17/194 (9%)

Query  21   VSTHITANFDILFDQRKLAGNVIHRFRSTTDGESNHIILDTNHLDIGSVKVNGQPS----  76
            V  H   +  I       +G+V    +      +N I+L  + L I S+ ++ + +    
Sbjct  1    VPEHYDLDLKIDLKNFTFSGSVTITLQLNN--ATNVIVLHASDLTIRSISLSDEVTSDGV  58

Query  77   --EWEYLPRLEPYGTPLKIKLDQGVKLNE--TIEVDISVQTTEKCTALQWLTPAQTSNKK  132
              ++    +       L I L + +      T+E++ S +  +  T     T    + +K
Sbjct  59   PADFTEDQKDGEK---LTIVLPETLNQTGPYTLEIEYSGELNDSMTGFYRST-YTDNGEK  114

Query  133  HPYMFSQCQAIHARSIFPCQDTPDVKCTLDFNITSPLPVIA-SGLPVRGSSEAPKSDGKT  191
               + +Q +   ARS FPC D P VK T   +I  P    A S +PV   +  P  +G  
Sbjct  115  KVLVTTQFEPTDARSAFPCFDEPSVKATFTISIIHPKDYTALSNMPVI--ASEPLENGWV  172

Query  192  LYKFHQKVPIPSYL  205
            +  F Q   + +YL
Sbjct  173  ITTFEQTPKMSTYL  186



Lambda      K        H        a         alpha
   0.316    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 277421980


Query= TCONS_00011387

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain. M...  175     8e-52
CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal dom...  109     3e-28
CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, ...  105     1e-27


>CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain.  Members 
of this family are aminopeptidases. The members differ widely 
in specificity, hydrolysing acidic, basic or neutral N-terminal 
residues. This family includes leukotriene-A4 hydrolase, 
this enzyme also has an aminopeptidase activity.
Length=219

 Score = 175 bits (447),  Expect = 8e-52, Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 95/235 (40%), Gaps = 35/235 (15%)

Query  281  WELEADTEKFINAIEKIVYPYVWGEYNVLILPPSFPYGGMENPIFTFATP---------S  331
            + LE   +      +    PY   +Y+++ LP  F  G MEN                 S
Sbjct  1    YALEITVKLLEFYEDYFNIPYPLPKYDLVALP-DFSAGAMENWGLITYRETLLLYDPGNS  59

Query  332  IISKDRENIDVIAHELAHSWSGNLVTNASWEHFWLNEGWTTYLERR-LRHGEPYRHFSAI  390
              S  +    VIAHELAH W GNLVT   W+  WLNEG+ TY+E        P  +    
Sbjct  60   STSDKQRVASVIAHELAHQWFGNLVTMKWWDDLWLNEGFATYMEYLGTDALFPEWNIWEQ  119

Query  391  IGWKALT-----DSVEHFGPEHDFTKLITNLKGMDPDDAFSSIPYEKGFNFLFHLENLVG  445
                 +      D++      H  T+ +      + DD F +IPYEKG + L  LE L+G
Sbjct  120  FLLDEVQNAMARDAL---DSSHPITQNVN--DPSEIDDIFDAIPYEKGASVLRMLETLLG  174

Query  446  KSKFDRFIPHYFNKYKGKSLDSYEFKSTILDFFKDDSDASTALNELD----WDSW  496
            +  F + +  Y  K++  +  + +    +          S A   LD     D+W
Sbjct  175  EEVFQKGLRSYLKKFQYGNATTEDLWDAL----------SEASGPLDVDSFMDTW  219


>CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal domain.  This 
domain is found at the N-terminus of aminopeptidases from 
the M1 family.
Length=186

 Score = 109 bits (275),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 44/194 (23%), Positives = 78/194 (40%), Gaps = 17/194 (9%)

Query  66   VSTHITANFDILFDQRKLAGNVIHRFRSTTDGESNHIILDTNHLDIGSVKVNGQPS----  121
            V  H   +  I       +G+V    +      +N I+L  + L I S+ ++ + +    
Sbjct  1    VPEHYDLDLKIDLKNFTFSGSVTITLQLNN--ATNVIVLHASDLTIRSISLSDEVTSDGV  58

Query  122  --EWEYLPRLEPYGTPLKIKLDQGVKLNE--TIEVDISVQTTEKCTALQWLTPAQTSNKK  177
              ++    +       L I L + +      T+E++ S +  +  T     T    + +K
Sbjct  59   PADFTEDQKDGEK---LTIVLPETLNQTGPYTLEIEYSGELNDSMTGFYRST-YTDNGEK  114

Query  178  HPYMFSQCQAIHARSIFPCQDTPDVKCTLDFNITSPLPVIA-SGLPVRGSSEAPKSDGKT  236
               + +Q +   ARS FPC D P VK T   +I  P    A S +PV   +  P  +G  
Sbjct  115  KVLVTTQFEPTDARSAFPCFDEPSVKATFTISIIHPKDYTALSNMPVI--ASEPLENGWV  172

Query  237  LYKFHQKVPIPSYL  250
            +  F Q   + +YL
Sbjct  173  ITTFEQTPKMSTYL  186


>CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, C-terminal. 
 Members of this family adopt a structure consisting of 
two layers of parallel alpha-helices, five in the inner layer 
and four in the outer, arranged in an antiparallel manner, 
with perpendicular loops containing short helical segments 
on top. They are required for the formation of a deep cleft 
harbouring the catalytic Zn2+ site in Leukotriene A4 hydrolase.
Length=112

 Score = 105 bits (265),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 49/78 (63%), Gaps = 1/78 (1%)

Query  541  LTANQVVVFLEQILVSERQLTPELSKLMGEIYGLAASQNIEVANLYFQVGLQAGDASVVE  600
             ++NQ VVFLE++L     L+PE  K + E+Y L+ S+N E+   + ++ L+A       
Sbjct  1    WSSNQKVVFLERLL-EFSPLSPEQLKALDEVYKLSESKNAEIRFRWLRLALKAKYEPAYP  59

Query  601  PTADLLGKIGRMKFVRPL  618
              A+ LG++GRMKFVRPL
Sbjct  60   EVAEFLGEVGRMKFVRPL  77



Lambda      K        H        a         alpha
   0.319    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 786069128


Query= TCONS_00011385

Length=662
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain. M...  182     6e-54
CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, ...  176     4e-53
CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal dom...  110     3e-28


>CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain.  Members 
of this family are aminopeptidases. The members differ widely 
in specificity, hydrolysing acidic, basic or neutral N-terminal 
residues. This family includes leukotriene-A4 hydrolase, 
this enzyme also has an aminopeptidase activity.
Length=219

 Score = 182 bits (464),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 67/235 (29%), Positives = 99/235 (42%), Gaps = 32/235 (14%)

Query  281  WELEADTEKFINAIEKIVYPYVWGEYNVLILPPSFPYGGMENPIFTFATP---------S  331
            + LE   +      +    PY   +Y+++ LP  F  G MEN                 S
Sbjct  1    YALEITVKLLEFYEDYFNIPYPLPKYDLVALP-DFSAGAMENWGLITYRETLLLYDPGNS  59

Query  332  IISKDRENIDVIAHELAHSWSGNLVTNASWEHFWLNEGWTTYLERRIVAAVHGE--PYRH  389
              S  +    VIAHELAH W GNLVT   W+  WLNEG+ TY+E     A+  E   +  
Sbjct  60   STSDKQRVASVIAHELAHQWFGNLVTMKWWDDLWLNEGFATYMEYLGTDALFPEWNIWEQ  119

Query  390  FSAIIGWKAL-TDSVEHFGPEHDFTKLITNLKGMDPDDAFSSIPYEKGFNFLFHLENLVG  448
            F       A+  D++      H  T+ +      + DD F +IPYEKG + L  LE L+G
Sbjct  120  FLLDEVQNAMARDAL---DSSHPITQNVN--DPSEIDDIFDAIPYEKGASVLRMLETLLG  174

Query  449  KSKFDRFIPHYFNKYKGKSLDSYEFKSTILDFFKDDSDASTALNELD----WDSW  499
            +  F + +  Y  K++  +  + +    +          S A   LD     D+W
Sbjct  175  EEVFQKGLRSYLKKFQYGNATTEDLWDAL----------SEASGPLDVDSFMDTW  219


>CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, C-terminal. 
 Members of this family adopt a structure consisting of 
two layers of parallel alpha-helices, five in the inner layer 
and four in the outer, arranged in an antiparallel manner, 
with perpendicular loops containing short helical segments 
on top. They are required for the formation of a deep cleft 
harbouring the catalytic Zn2+ site in Leukotriene A4 hydrolase.
Length=112

 Score = 176 bits (448),  Expect = 4e-53, Method: Composition-based stats.
 Identities = 58/113 (51%), Positives = 78/113 (69%), Gaps = 1/113 (1%)

Query  544  LTANQVVVFLEQILVSERQLTPELSKLMGEIYGLAASQNIEVANLYFQVGLQAGDASVVE  603
             ++NQ VVFLE++L     L+PE  K + E+Y L+ S+N E+   + ++ L+A       
Sbjct  1    WSSNQKVVFLERLL-EFSPLSPEQLKALDEVYKLSESKNAEIRFRWLRLALKAKYEPAYP  59

Query  604  PTADLLGKIGRMKFVRPLYRKLAKFDRKRALDTFEKHKGFYHPICRAMVEKDL  656
              A+ LG++GRMKFVRPLYR L K DR  A++TFEK+K FYHPICRAMVEKDL
Sbjct  60   EVAEFLGEVGRMKFVRPLYRALNKVDRDLAVETFEKNKDFYHPICRAMVEKDL  112


>CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal domain.  This 
domain is found at the N-terminus of aminopeptidases from 
the M1 family.
Length=186

 Score = 110 bits (276),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 44/194 (23%), Positives = 78/194 (40%), Gaps = 17/194 (9%)

Query  66   VSTHITANFDILFDQRKLAGNVIHRFRSTTDGESNHIILDTNHLDIGSVKVNGQPS----  121
            V  H   +  I       +G+V    +      +N I+L  + L I S+ ++ + +    
Sbjct  1    VPEHYDLDLKIDLKNFTFSGSVTITLQLNN--ATNVIVLHASDLTIRSISLSDEVTSDGV  58

Query  122  --EWEYLPRLEPYGTPLKIKLDQGVKLNE--TIEVDISVQTTEKCTALQWLTPAQTSNKK  177
              ++    +       L I L + +      T+E++ S +  +  T     T    + +K
Sbjct  59   PADFTEDQKDGEK---LTIVLPETLNQTGPYTLEIEYSGELNDSMTGFYRST-YTDNGEK  114

Query  178  HPYMFSQCQAIHARSIFPCQDTPDVKCTLDFNITSPLPVIA-SGLPVRGSSEAPKSDGKT  236
               + +Q +   ARS FPC D P VK T   +I  P    A S +PV   +  P  +G  
Sbjct  115  KVLVTTQFEPTDARSAFPCFDEPSVKATFTISIIHPKDYTALSNMPVI--ASEPLENGWV  172

Query  237  LYKFHQKVPIPSYL  250
            +  F Q   + +YL
Sbjct  173  ITTFEQTPKMSTYL  186



Lambda      K        H        a         alpha
   0.319    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 839155510


Query= TCONS_00011386

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, ...  172     2e-54
CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain. M...  143     8e-42


>CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, C-terminal. 
 Members of this family adopt a structure consisting of 
two layers of parallel alpha-helices, five in the inner layer 
and four in the outer, arranged in an antiparallel manner, 
with perpendicular loops containing short helical segments 
on top. They are required for the formation of a deep cleft 
harbouring the catalytic Zn2+ site in Leukotriene A4 hydrolase.
Length=112

 Score = 172 bits (438),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 58/113 (51%), Positives = 78/113 (69%), Gaps = 1/113 (1%)

Query  222  LTANQVVVFLEQILVSERQLTPELSKLMGEIYGLAASQNIEVANLYFQVGLQAGDASVVE  281
             ++NQ VVFLE++L     L+PE  K + E+Y L+ S+N E+   + ++ L+A       
Sbjct  1    WSSNQKVVFLERLL-EFSPLSPEQLKALDEVYKLSESKNAEIRFRWLRLALKAKYEPAYP  59

Query  282  PTADLLGKIGRMKFVRPLYRKLAKFDRKRALDTFEKHKGFYHPICRAMVEKDL  334
              A+ LG++GRMKFVRPLYR L K DR  A++TFEK+K FYHPICRAMVEKDL
Sbjct  60   EVAEFLGEVGRMKFVRPLYRALNKVDRDLAVETFEKNKDFYHPICRAMVEKDL  112


>CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain.  Members 
of this family are aminopeptidases. The members differ widely 
in specificity, hydrolysing acidic, basic or neutral N-terminal 
residues. This family includes leukotriene-A4 hydrolase, 
this enzyme also has an aminopeptidase activity.
Length=219

 Score = 143 bits (362),  Expect = 8e-42, Method: Composition-based stats.
 Identities = 55/196 (28%), Positives = 79/196 (40%), Gaps = 34/196 (17%)

Query  1    MENPIFTFATP---------SIISKDRENIDVIAHELAHSWSGNLVTNASWEHFWLNEGW  51
            MEN                 S  S  +    VIAHELAH W GNLVT   W+  WLNEG+
Sbjct  39   MENWGLITYRETLLLYDPGNSSTSDKQRVASVIAHELAHQWFGNLVTMKWWDDLWLNEGF  98

Query  52   TTYLERR-LRHGEPYRHFSAIIGWKALT-----DSVEHFGPEHDFTKLITNLKGMDPDDA  105
             TY+E        P  +         +      D++      H  T+ +      + DD 
Sbjct  99   ATYMEYLGTDALFPEWNIWEQFLLDEVQNAMARDAL---DSSHPITQNVN--DPSEIDDI  153

Query  106  FSSIPYEKGFNFLFHLENLVGKSKFDRFIPHYFNKYKGKSLDSYEFKSTILDFFKDDSDA  165
            F +IPYEKG + L  LE L+G+  F + +  Y  K++  +  + +    +          
Sbjct  154  FDAIPYEKGASVLRMLETLLGEEVFQKGLRSYLKKFQYGNATTEDLWDAL----------  203

Query  166  STALNELD----WDSW  177
            S A   LD     D+W
Sbjct  204  SEASGPLDVDSFMDTW  219



Lambda      K        H        a         alpha
   0.320    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00017691

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain. M...  165     7e-50
CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal dom...  88.9    2e-21


>CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain.  Members 
of this family are aminopeptidases. The members differ widely 
in specificity, hydrolysing acidic, basic or neutral N-terminal 
residues. This family includes leukotriene-A4 hydrolase, 
this enzyme also has an aminopeptidase activity.
Length=219

 Score = 165 bits (421),  Expect = 7e-50, Method: Composition-based stats.
 Identities = 59/190 (31%), Positives = 84/190 (44%), Gaps = 18/190 (9%)

Query  216  WELEADTEKFINAIEKIVYPYVWGEYNVLILPPSFPYGGMENPIFTFATP---------S  266
            + LE   +      +    PY   +Y+++ LP  F  G MEN                 S
Sbjct  1    YALEITVKLLEFYEDYFNIPYPLPKYDLVALP-DFSAGAMENWGLITYRETLLLYDPGNS  59

Query  267  IISKDRENIDVIAHELAHSWSGNLVTNASWEHFWLNEGWTTYLERRIVAAVHGE--PYRH  324
              S  +    VIAHELAH W GNLVT   W+  WLNEG+ TY+E     A+  E   +  
Sbjct  60   STSDKQRVASVIAHELAHQWFGNLVTMKWWDDLWLNEGFATYMEYLGTDALFPEWNIWEQ  119

Query  325  FSAIIGWKAL-TDSVEHFGPEHDFTKLITNLKGMDPDDAFSSIPYEKGFNFLFHLENLVG  383
            F       A+  D++      H  T+ +      + DD F +IPYEKG + L  LE L+G
Sbjct  120  FLLDEVQNAMARDAL---DSSHPITQNVN--DPSEIDDIFDAIPYEKGASVLRMLETLLG  174

Query  384  KSKFDRFIPH  393
            +  F + +  
Sbjct  175  EEVFQKGLRS  184


>CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal domain.  This 
domain is found at the N-terminus of aminopeptidases from 
the M1 family.
Length=186

 Score = 88.9 bits (221),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 39/172 (23%), Positives = 68/172 (40%), Gaps = 15/172 (9%)

Query  21   VSTHITANFDILFDQRKLAGNVIHRFRSTTDGESNHIILDTNHLDIGSVKVNGQPS----  76
            V  H   +  I       +G+V    +      +N I+L  + L I S+ ++ + +    
Sbjct  1    VPEHYDLDLKIDLKNFTFSGSVTITLQLNN--ATNVIVLHASDLTIRSISLSDEVTSDGV  58

Query  77   --EWEYLPRLEPYGTPLKIKLDQGVKLNE--TIEVDISVQTTEKCTALQWLTPAQTSNKK  132
              ++    +       L I L + +      T+E++ S +  +  T     T    + +K
Sbjct  59   PADFTEDQKDGEK---LTIVLPETLNQTGPYTLEIEYSGELNDSMTGFYRST-YTDNGEK  114

Query  133  HPYMFSQCQAIHARSIFPCQDTPDVKCTLDFNITSPLPVIA-SGLPVRGSSE  183
               + +Q +   ARS FPC D P VK T   +I  P    A S +PV  S  
Sbjct  115  KVLVTTQFEPTDARSAFPCFDEPSVKATFTISIIHPKDYTALSNMPVIASEP  166



Lambda      K        H        a         alpha
   0.318    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00011388

Length=662
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain. M...  182     6e-54
CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, ...  176     4e-53
CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal dom...  110     3e-28


>CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain.  Members 
of this family are aminopeptidases. The members differ widely 
in specificity, hydrolysing acidic, basic or neutral N-terminal 
residues. This family includes leukotriene-A4 hydrolase, 
this enzyme also has an aminopeptidase activity.
Length=219

 Score = 182 bits (464),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 67/235 (29%), Positives = 99/235 (42%), Gaps = 32/235 (14%)

Query  281  WELEADTEKFINAIEKIVYPYVWGEYNVLILPPSFPYGGMENPIFTFATP---------S  331
            + LE   +      +    PY   +Y+++ LP  F  G MEN                 S
Sbjct  1    YALEITVKLLEFYEDYFNIPYPLPKYDLVALP-DFSAGAMENWGLITYRETLLLYDPGNS  59

Query  332  IISKDRENIDVIAHELAHSWSGNLVTNASWEHFWLNEGWTTYLERRIVAAVHGE--PYRH  389
              S  +    VIAHELAH W GNLVT   W+  WLNEG+ TY+E     A+  E   +  
Sbjct  60   STSDKQRVASVIAHELAHQWFGNLVTMKWWDDLWLNEGFATYMEYLGTDALFPEWNIWEQ  119

Query  390  FSAIIGWKAL-TDSVEHFGPEHDFTKLITNLKGMDPDDAFSSIPYEKGFNFLFHLENLVG  448
            F       A+  D++      H  T+ +      + DD F +IPYEKG + L  LE L+G
Sbjct  120  FLLDEVQNAMARDAL---DSSHPITQNVN--DPSEIDDIFDAIPYEKGASVLRMLETLLG  174

Query  449  KSKFDRFIPHYFNKYKGKSLDSYEFKSTILDFFKDDSDASTALNELD----WDSW  499
            +  F + +  Y  K++  +  + +    +          S A   LD     D+W
Sbjct  175  EEVFQKGLRSYLKKFQYGNATTEDLWDAL----------SEASGPLDVDSFMDTW  219


>CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, C-terminal. 
 Members of this family adopt a structure consisting of 
two layers of parallel alpha-helices, five in the inner layer 
and four in the outer, arranged in an antiparallel manner, 
with perpendicular loops containing short helical segments 
on top. They are required for the formation of a deep cleft 
harbouring the catalytic Zn2+ site in Leukotriene A4 hydrolase.
Length=112

 Score = 176 bits (448),  Expect = 4e-53, Method: Composition-based stats.
 Identities = 58/113 (51%), Positives = 78/113 (69%), Gaps = 1/113 (1%)

Query  544  LTANQVVVFLEQILVSERQLTPELSKLMGEIYGLAASQNIEVANLYFQVGLQAGDASVVE  603
             ++NQ VVFLE++L     L+PE  K + E+Y L+ S+N E+   + ++ L+A       
Sbjct  1    WSSNQKVVFLERLL-EFSPLSPEQLKALDEVYKLSESKNAEIRFRWLRLALKAKYEPAYP  59

Query  604  PTADLLGKIGRMKFVRPLYRKLAKFDRKRALDTFEKHKGFYHPICRAMVEKDL  656
              A+ LG++GRMKFVRPLYR L K DR  A++TFEK+K FYHPICRAMVEKDL
Sbjct  60   EVAEFLGEVGRMKFVRPLYRALNKVDRDLAVETFEKNKDFYHPICRAMVEKDL  112


>CDD:465557 pfam17900, Peptidase_M1_N, Peptidase M1 N-terminal domain.  This 
domain is found at the N-terminus of aminopeptidases from 
the M1 family.
Length=186

 Score = 110 bits (276),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 44/194 (23%), Positives = 78/194 (40%), Gaps = 17/194 (9%)

Query  66   VSTHITANFDILFDQRKLAGNVIHRFRSTTDGESNHIILDTNHLDIGSVKVNGQPS----  121
            V  H   +  I       +G+V    +      +N I+L  + L I S+ ++ + +    
Sbjct  1    VPEHYDLDLKIDLKNFTFSGSVTITLQLNN--ATNVIVLHASDLTIRSISLSDEVTSDGV  58

Query  122  --EWEYLPRLEPYGTPLKIKLDQGVKLNE--TIEVDISVQTTEKCTALQWLTPAQTSNKK  177
              ++    +       L I L + +      T+E++ S +  +  T     T    + +K
Sbjct  59   PADFTEDQKDGEK---LTIVLPETLNQTGPYTLEIEYSGELNDSMTGFYRST-YTDNGEK  114

Query  178  HPYMFSQCQAIHARSIFPCQDTPDVKCTLDFNITSPLPVIA-SGLPVRGSSEAPKSDGKT  236
               + +Q +   ARS FPC D P VK T   +I  P    A S +PV   +  P  +G  
Sbjct  115  KVLVTTQFEPTDARSAFPCFDEPSVKATFTISIIHPKDYTALSNMPVI--ASEPLENGWV  172

Query  237  LYKFHQKVPIPSYL  250
            +  F Q   + +YL
Sbjct  173  ITTFEQTPKMSTYL  186



Lambda      K        H        a         alpha
   0.319    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 839155510


Query= TCONS_00011392

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, ...  172     2e-54
CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain. M...  143     8e-42


>CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, C-terminal. 
 Members of this family adopt a structure consisting of 
two layers of parallel alpha-helices, five in the inner layer 
and four in the outer, arranged in an antiparallel manner, 
with perpendicular loops containing short helical segments 
on top. They are required for the formation of a deep cleft 
harbouring the catalytic Zn2+ site in Leukotriene A4 hydrolase.
Length=112

 Score = 172 bits (438),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 58/113 (51%), Positives = 78/113 (69%), Gaps = 1/113 (1%)

Query  222  LTANQVVVFLEQILVSERQLTPELSKLMGEIYGLAASQNIEVANLYFQVGLQAGDASVVE  281
             ++NQ VVFLE++L     L+PE  K + E+Y L+ S+N E+   + ++ L+A       
Sbjct  1    WSSNQKVVFLERLL-EFSPLSPEQLKALDEVYKLSESKNAEIRFRWLRLALKAKYEPAYP  59

Query  282  PTADLLGKIGRMKFVRPLYRKLAKFDRKRALDTFEKHKGFYHPICRAMVEKDL  334
              A+ LG++GRMKFVRPLYR L K DR  A++TFEK+K FYHPICRAMVEKDL
Sbjct  60   EVAEFLGEVGRMKFVRPLYRALNKVDRDLAVETFEKNKDFYHPICRAMVEKDL  112


>CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain.  Members 
of this family are aminopeptidases. The members differ widely 
in specificity, hydrolysing acidic, basic or neutral N-terminal 
residues. This family includes leukotriene-A4 hydrolase, 
this enzyme also has an aminopeptidase activity.
Length=219

 Score = 143 bits (362),  Expect = 8e-42, Method: Composition-based stats.
 Identities = 55/196 (28%), Positives = 79/196 (40%), Gaps = 34/196 (17%)

Query  1    MENPIFTFATP---------SIISKDRENIDVIAHELAHSWSGNLVTNASWEHFWLNEGW  51
            MEN                 S  S  +    VIAHELAH W GNLVT   W+  WLNEG+
Sbjct  39   MENWGLITYRETLLLYDPGNSSTSDKQRVASVIAHELAHQWFGNLVTMKWWDDLWLNEGF  98

Query  52   TTYLERR-LRHGEPYRHFSAIIGWKALT-----DSVEHFGPEHDFTKLITNLKGMDPDDA  105
             TY+E        P  +         +      D++      H  T+ +      + DD 
Sbjct  99   ATYMEYLGTDALFPEWNIWEQFLLDEVQNAMARDAL---DSSHPITQNVN--DPSEIDDI  153

Query  106  FSSIPYEKGFNFLFHLENLVGKSKFDRFIPHYFNKYKGKSLDSYEFKSTILDFFKDDSDA  165
            F +IPYEKG + L  LE L+G+  F + +  Y  K++  +  + +    +          
Sbjct  154  FDAIPYEKGASVLRMLETLLGEEVFQKGLRSYLKKFQYGNATTEDLWDAL----------  203

Query  166  STALNELD----WDSW  177
            S A   LD     D+W
Sbjct  204  SEASGPLDVDSFMDTW  219



Lambda      K        H        a         alpha
   0.320    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00017692

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, ...  170     5e-55
CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain. M...  68.9    1e-14


>CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, C-terminal. 
 Members of this family adopt a structure consisting of 
two layers of parallel alpha-helices, five in the inner layer 
and four in the outer, arranged in an antiparallel manner, 
with perpendicular loops containing short helical segments 
on top. They are required for the formation of a deep cleft 
harbouring the catalytic Zn2+ site in Leukotriene A4 hydrolase.
Length=112

 Score = 170 bits (433),  Expect = 5e-55, Method: Composition-based stats.
 Identities = 58/113 (51%), Positives = 78/113 (69%), Gaps = 1/113 (1%)

Query  123  LTANQVVVFLEQILVSERQLTPELSKLMGEIYGLAASQNIEVANLYFQVGLQAGDASVVE  182
             ++NQ VVFLE++L     L+PE  K + E+Y L+ S+N E+   + ++ L+A       
Sbjct  1    WSSNQKVVFLERLL-EFSPLSPEQLKALDEVYKLSESKNAEIRFRWLRLALKAKYEPAYP  59

Query  183  PTADLLGKIGRMKFVRPLYRKLAKFDRKRALDTFEKHKGFYHPICRAMVEKDL  235
              A+ LG++GRMKFVRPLYR L K DR  A++TFEK+K FYHPICRAMVEKDL
Sbjct  60   EVAEFLGEVGRMKFVRPLYRALNKVDRDLAVETFEKNKDFYHPICRAMVEKDL  112


>CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain.  Members 
of this family are aminopeptidases. The members differ widely 
in specificity, hydrolysing acidic, basic or neutral N-terminal 
residues. This family includes leukotriene-A4 hydrolase, 
this enzyme also has an aminopeptidase activity.
Length=219

 Score = 68.9 bits (169),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 14/82 (17%)

Query  1    MDPDDAFSSIPYEKGFNFLFHLENLVGKSKFDRFIPHYFNKYKGKSLDSYEFKSTILDFF  60
             + DD F +IPYEKG + L  LE L+G+  F + +  Y  K++  +  + +    +    
Sbjct  148  SEIDDIFDAIPYEKGASVLRMLETLLGEEVFQKGLRSYLKKFQYGNATTEDLWDAL----  203

Query  61   KDDSDASTALNELD----WDSW  78
                  S A   LD     D+W
Sbjct  204  ------SEASGPLDVDSFMDTW  219



Lambda      K        H        a         alpha
   0.320    0.139    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0702    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00011393

Length=92
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, ...  143     1e-46


>CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, C-terminal. 
 Members of this family adopt a structure consisting of 
two layers of parallel alpha-helices, five in the inner layer 
and four in the outer, arranged in an antiparallel manner, 
with perpendicular loops containing short helical segments 
on top. They are required for the formation of a deep cleft 
harbouring the catalytic Zn2+ site in Leukotriene A4 hydrolase.
Length=112

 Score = 143 bits (363),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 46/86 (53%), Positives = 61/86 (71%), Gaps = 0/86 (0%)

Query  1    MGEIYGLAASQNIEVANLYFQVGLQAGDASVVEPTADLLGKIGRMKFVRPLYRKLAKFDR  60
            + E+Y L+ S+N E+   + ++ L+A         A+ LG++GRMKFVRPLYR L K DR
Sbjct  27   LDEVYKLSESKNAEIRFRWLRLALKAKYEPAYPEVAEFLGEVGRMKFVRPLYRALNKVDR  86

Query  61   KRALDTFEKHKGFYHPICRAMVEKDL  86
              A++TFEK+K FYHPICRAMVEKDL
Sbjct  87   DLAVETFEKNKDFYHPICRAMVEKDL  112



Lambda      K        H        a         alpha
   0.323    0.141    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00011394

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, ...  170     5e-55
CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain. M...  68.9    1e-14


>CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, C-terminal. 
 Members of this family adopt a structure consisting of 
two layers of parallel alpha-helices, five in the inner layer 
and four in the outer, arranged in an antiparallel manner, 
with perpendicular loops containing short helical segments 
on top. They are required for the formation of a deep cleft 
harbouring the catalytic Zn2+ site in Leukotriene A4 hydrolase.
Length=112

 Score = 170 bits (433),  Expect = 5e-55, Method: Composition-based stats.
 Identities = 58/113 (51%), Positives = 78/113 (69%), Gaps = 1/113 (1%)

Query  123  LTANQVVVFLEQILVSERQLTPELSKLMGEIYGLAASQNIEVANLYFQVGLQAGDASVVE  182
             ++NQ VVFLE++L     L+PE  K + E+Y L+ S+N E+   + ++ L+A       
Sbjct  1    WSSNQKVVFLERLL-EFSPLSPEQLKALDEVYKLSESKNAEIRFRWLRLALKAKYEPAYP  59

Query  183  PTADLLGKIGRMKFVRPLYRKLAKFDRKRALDTFEKHKGFYHPICRAMVEKDL  235
              A+ LG++GRMKFVRPLYR L K DR  A++TFEK+K FYHPICRAMVEKDL
Sbjct  60   EVAEFLGEVGRMKFVRPLYRALNKVDRDLAVETFEKNKDFYHPICRAMVEKDL  112


>CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain.  Members 
of this family are aminopeptidases. The members differ widely 
in specificity, hydrolysing acidic, basic or neutral N-terminal 
residues. This family includes leukotriene-A4 hydrolase, 
this enzyme also has an aminopeptidase activity.
Length=219

 Score = 68.9 bits (169),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 14/82 (17%)

Query  1    MDPDDAFSSIPYEKGFNFLFHLENLVGKSKFDRFIPHYFNKYKGKSLDSYEFKSTILDFF  60
             + DD F +IPYEKG + L  LE L+G+  F + +  Y  K++  +  + +    +    
Sbjct  148  SEIDDIFDAIPYEKGASVLRMLETLLGEEVFQKGLRSYLKKFQYGNATTEDLWDAL----  203

Query  61   KDDSDASTALNELD----WDSW  78
                  S A   LD     D+W
Sbjct  204  ------SEASGPLDVDSFMDTW  219



Lambda      K        H        a         alpha
   0.320    0.139    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00011395

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, ...  170     5e-55
CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain. M...  68.9    1e-14


>CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, C-terminal. 
 Members of this family adopt a structure consisting of 
two layers of parallel alpha-helices, five in the inner layer 
and four in the outer, arranged in an antiparallel manner, 
with perpendicular loops containing short helical segments 
on top. They are required for the formation of a deep cleft 
harbouring the catalytic Zn2+ site in Leukotriene A4 hydrolase.
Length=112

 Score = 170 bits (433),  Expect = 5e-55, Method: Composition-based stats.
 Identities = 58/113 (51%), Positives = 78/113 (69%), Gaps = 1/113 (1%)

Query  123  LTANQVVVFLEQILVSERQLTPELSKLMGEIYGLAASQNIEVANLYFQVGLQAGDASVVE  182
             ++NQ VVFLE++L     L+PE  K + E+Y L+ S+N E+   + ++ L+A       
Sbjct  1    WSSNQKVVFLERLL-EFSPLSPEQLKALDEVYKLSESKNAEIRFRWLRLALKAKYEPAYP  59

Query  183  PTADLLGKIGRMKFVRPLYRKLAKFDRKRALDTFEKHKGFYHPICRAMVEKDL  235
              A+ LG++GRMKFVRPLYR L K DR  A++TFEK+K FYHPICRAMVEKDL
Sbjct  60   EVAEFLGEVGRMKFVRPLYRALNKVDRDLAVETFEKNKDFYHPICRAMVEKDL  112


>CDD:426262 pfam01433, Peptidase_M1, Peptidase family M1 domain.  Members 
of this family are aminopeptidases. The members differ widely 
in specificity, hydrolysing acidic, basic or neutral N-terminal 
residues. This family includes leukotriene-A4 hydrolase, 
this enzyme also has an aminopeptidase activity.
Length=219

 Score = 68.9 bits (169),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 14/82 (17%)

Query  1    MDPDDAFSSIPYEKGFNFLFHLENLVGKSKFDRFIPHYFNKYKGKSLDSYEFKSTILDFF  60
             + DD F +IPYEKG + L  LE L+G+  F + +  Y  K++  +  + +    +    
Sbjct  148  SEIDDIFDAIPYEKGASVLRMLETLLGEEVFQKGLRSYLKKFQYGNATTEDLWDAL----  203

Query  61   KDDSDASTALNELD----WDSW  78
                  S A   LD     D+W
Sbjct  204  ------SEASGPLDVDSFMDTW  219



Lambda      K        H        a         alpha
   0.320    0.139    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00011396

Length=92
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, ...  143     1e-46


>CDD:462686 pfam09127, Leuk-A4-hydro_C, Leukotriene A4 hydrolase, C-terminal. 
 Members of this family adopt a structure consisting of 
two layers of parallel alpha-helices, five in the inner layer 
and four in the outer, arranged in an antiparallel manner, 
with perpendicular loops containing short helical segments 
on top. They are required for the formation of a deep cleft 
harbouring the catalytic Zn2+ site in Leukotriene A4 hydrolase.
Length=112

 Score = 143 bits (363),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 46/86 (53%), Positives = 61/86 (71%), Gaps = 0/86 (0%)

Query  1    MGEIYGLAASQNIEVANLYFQVGLQAGDASVVEPTADLLGKIGRMKFVRPLYRKLAKFDR  60
            + E+Y L+ S+N E+   + ++ L+A         A+ LG++GRMKFVRPLYR L K DR
Sbjct  27   LDEVYKLSESKNAEIRFRWLRLALKAKYEPAYPEVAEFLGEVGRMKFVRPLYRALNKVDR  86

Query  61   KRALDTFEKHKGFYHPICRAMVEKDL  86
              A++TFEK+K FYHPICRAMVEKDL
Sbjct  87   DLAVETFEKNKDFYHPICRAMVEKDL  112



Lambda      K        H        a         alpha
   0.323    0.141    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00017693

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  201     1e-64
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            147     5e-43


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 201 bits (513),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 120/258 (47%), Gaps = 45/258 (17%)

Query  46   FEIGKPLGKGKFGRVYLAKERSSGFVCALKVLHKSELQQGGVQKQVRREIEIQSNLRHPN  105
            +E+ + LG G FG VY AK R +G + A+K + K +  +    K + REI+I   L HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEK-IKKKKDKNILREIKILKKLNHPN  59

Query  106  VLRLYGHFHDSKRIFLILEFAGRGELYKHLRKEHRFPEWKAAQYIAQMAAALKYLHKKHV  165
            ++RLY  F D   ++L+LE+   G L+  L ++  F E +A   + Q+   L+       
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE-------  112

Query  166  MHRDIKPENILVGIHGEIKISDFGWSVHAPNNRRQTMCGTLDYLPPEMLKPNPQDNYYSE  225
                                           +   T  GT  Y+ PE+L  NP    Y  
Sbjct  113  -----------------------------SGSSLTTFVGTPWYMAPEVLGGNP----YGP  139

Query  226  KVDLWSLGVLTYEFLVGEAPFEDTPVMTQRRIARADM----TVPSFVSPEAKDLIKRLLV  281
            KVD+WSLG + YE L G+ PF          +          +PS +S EAKDL+K+LL 
Sbjct  140  KVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLK  199

Query  282  LDPDKRISLDEIQRHPWI  299
             DP KR++  +  +HPW 
Sbjct  200  KDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 147 bits (373),  Expect = 5e-43, Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 122/267 (46%), Gaps = 26/267 (10%)

Query  46   FEIGKPLGKGKFGRVYLAKERSSGFVCALKVLHKSELQQGGVQKQVR---REIEIQSNLR  102
              +G+ LG+G FG VY    +  G    +KV  K+ L++G  +++      E  I   L 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKT-LKEGADEEEREDFLEEASIMKKLD  59

Query  103  HPNVLRLYGHFHDSKRIFLILEFAGRGELYKHLRK-EHRFPEWKAAQYIAQMAAALKYLH  161
            HPN+++L G     + ++++ E+   G+L   LRK + +           Q+A  ++YL 
Sbjct  60   HPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLE  119

Query  162  KKHVMHRDIKPENILVGIHGEIKISDFGWSVHAPNNRRQTMCGTLD----YLPPEMLKPN  217
             K+ +HRD+   N LV  +  +KISDFG S    ++      G       ++ PE LK  
Sbjct  120  SKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLK--  177

Query  218  PQDNYYSEKVDLWSLGVLTYEFL-VGEAPFEDTP-------VMTQRRIARADMTVPSFVS  269
              D  ++ K D+WS GVL +E   +GE P+           +    R+ +     P    
Sbjct  178  --DGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQ-----PENCP  230

Query  270  PEAKDLIKRLLVLDPDKRISLDEIQRH  296
             E  DL+K+    DP+ R +  E+   
Sbjct  231  DELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.319    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00011397

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  193     2e-60
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            143     2e-40


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 193 bits (493),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 81/275 (29%), Positives = 120/275 (44%), Gaps = 62/275 (23%)

Query  120  FEIGKPLGKGKFGRVYLAKERSSGFVCALKVLHKSELQQGGVQKQVRREIEIQSNLRHPN  179
            +E+ + LG G FG VY AK R +G + A+K + K +  +    K + REI+I   L HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEK-IKKKKDKNILREIKILKKLNHPN  59

Query  180  VLRLYGHFHDSKRIFLILEFAGRGELYKHLRKEHRFPEWKAAQYIAQMAAALKYLHKKHV  239
            ++RLY  F D   ++L+LE+   G L+  L ++  F E +A   + Q+   L+       
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE-------  112

Query  240  MHRDIKPENILVGIHGEIKISDFGWSVHAPNNRRQTMCGTLDYLPPEMLKPNPQDNYYSE  299
                                           +   T  GT  Y+ PE+L  NP    Y  
Sbjct  113  -----------------------------SGSSLTTFVGTPWYMAPEVLGGNP----YGP  139

Query  300  KVDLWSLGVLTYEFLVGEAPFEDTPVMTQRRIARADM----TVPSFVSPEAKDLIKRVCE  355
            KVD+WSLG + YE L G+ PF          +          +PS +S EAKDL+K+   
Sbjct  140  KVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKK---  196

Query  356  PYRSRQVHFLTFKQLLVLDPDKRISLDEIQRHPWI  390
                          LL  DP KR++  +  +HPW 
Sbjct  197  --------------LLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 143 bits (362),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 73/284 (26%), Positives = 122/284 (43%), Gaps = 43/284 (15%)

Query  120  FEIGKPLGKGKFGRVYLAKERSSGFVCALKVLHKSELQQGGVQKQVR---REIEIQSNLR  176
              +G+ LG+G FG VY    +  G    +KV  K+ L++G  +++      E  I   L 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKT-LKEGADEEEREDFLEEASIMKKLD  59

Query  177  HPNVLRLYGHFHDSKRIFLILEFAGRGELYKHLRK-EHRFPEWKAAQYIAQMAAALKYLH  235
            HPN+++L G     + ++++ E+   G+L   LRK + +           Q+A  ++YL 
Sbjct  60   HPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLE  119

Query  236  KKHVMHRDIKPENILVGIHGEIKISDFGWSVHAPNNRRQTMCGTLD----YLPPEMLKPN  291
             K+ +HRD+   N LV  +  +KISDFG S    ++      G       ++ PE LK  
Sbjct  120  SKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLK--  177

Query  292  PQDNYYSEKVDLWSLGVLTYEFL-VGEAPFEDTP-------VMTQRRIARADMTVPSFVS  343
              D  ++ K D+WS GVL +E   +GE P+           +    R+ +     P    
Sbjct  178  --DGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQ-----PENCP  230

Query  344  PEAKDLIKRVCEPYRSRQVHFLTFKQLLVLDPDKRISLDEIQRH  387
             E  DL+K+                     DP+ R +  E+   
Sbjct  231  DELYDLMKQCWAY-----------------DPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.318    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00017694

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  204     8e-65
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            149     4e-43


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 204 bits (521),  Expect = 8e-65, Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 120/258 (47%), Gaps = 45/258 (17%)

Query  120  FEIGKPLGKGKFGRVYLAKERSSGFVCALKVLHKSELQQGGVQKQVRREIEIQSNLRHPN  179
            +E+ + LG G FG VY AK R +G + A+K + K +  +    K + REI+I   L HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEK-IKKKKDKNILREIKILKKLNHPN  59

Query  180  VLRLYGHFHDSKRIFLILEFAGRGELYKHLRKEHRFPEWKAAQYIAQMAAALKYLHKKHV  239
            ++RLY  F D   ++L+LE+   G L+  L ++  F E +A   + Q+   L+       
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE-------  112

Query  240  MHRDIKPENILVGIHGEIKISDFGWSVHAPNNRRQTMCGTLDYLPPEMLKPNPQDNYYSE  299
                                           +   T  GT  Y+ PE+L  NP    Y  
Sbjct  113  -----------------------------SGSSLTTFVGTPWYMAPEVLGGNP----YGP  139

Query  300  KVDLWSLGVLTYEFLVGEAPFEDTPVMTQRRIARADM----TVPSFVSPEAKDLIKRLLV  355
            KVD+WSLG + YE L G+ PF          +          +PS +S EAKDL+K+LL 
Sbjct  140  KVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLK  199

Query  356  LDPDKRISLDEIQRHPWI  373
             DP KR++  +  +HPW 
Sbjct  200  KDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 149 bits (379),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 122/267 (46%), Gaps = 26/267 (10%)

Query  120  FEIGKPLGKGKFGRVYLAKERSSGFVCALKVLHKSELQQGGVQKQVR---REIEIQSNLR  176
              +G+ LG+G FG VY    +  G    +KV  K+ L++G  +++      E  I   L 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKT-LKEGADEEEREDFLEEASIMKKLD  59

Query  177  HPNVLRLYGHFHDSKRIFLILEFAGRGELYKHLRK-EHRFPEWKAAQYIAQMAAALKYLH  235
            HPN+++L G     + ++++ E+   G+L   LRK + +           Q+A  ++YL 
Sbjct  60   HPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLE  119

Query  236  KKHVMHRDIKPENILVGIHGEIKISDFGWSVHAPNNRRQTMCGTLD----YLPPEMLKPN  291
             K+ +HRD+   N LV  +  +KISDFG S    ++      G       ++ PE LK  
Sbjct  120  SKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLK--  177

Query  292  PQDNYYSEKVDLWSLGVLTYEFL-VGEAPFEDTP-------VMTQRRIARADMTVPSFVS  343
              D  ++ K D+WS GVL +E   +GE P+           +    R+ +     P    
Sbjct  178  --DGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQ-----PENCP  230

Query  344  PEAKDLIKRLLVLDPDKRISLDEIQRH  370
             E  DL+K+    DP+ R +  E+   
Sbjct  231  DELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.317    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00011399

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  204     8e-65
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            149     4e-43


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 204 bits (521),  Expect = 8e-65, Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 120/258 (47%), Gaps = 45/258 (17%)

Query  120  FEIGKPLGKGKFGRVYLAKERSSGFVCALKVLHKSELQQGGVQKQVRREIEIQSNLRHPN  179
            +E+ + LG G FG VY AK R +G + A+K + K +  +    K + REI+I   L HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEK-IKKKKDKNILREIKILKKLNHPN  59

Query  180  VLRLYGHFHDSKRIFLILEFAGRGELYKHLRKEHRFPEWKAAQYIAQMAAALKYLHKKHV  239
            ++RLY  F D   ++L+LE+   G L+  L ++  F E +A   + Q+   L+       
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE-------  112

Query  240  MHRDIKPENILVGIHGEIKISDFGWSVHAPNNRRQTMCGTLDYLPPEMLKPNPQDNYYSE  299
                                           +   T  GT  Y+ PE+L  NP    Y  
Sbjct  113  -----------------------------SGSSLTTFVGTPWYMAPEVLGGNP----YGP  139

Query  300  KVDLWSLGVLTYEFLVGEAPFEDTPVMTQRRIARADM----TVPSFVSPEAKDLIKRLLV  355
            KVD+WSLG + YE L G+ PF          +          +PS +S EAKDL+K+LL 
Sbjct  140  KVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLK  199

Query  356  LDPDKRISLDEIQRHPWI  373
             DP KR++  +  +HPW 
Sbjct  200  KDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 149 bits (379),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 122/267 (46%), Gaps = 26/267 (10%)

Query  120  FEIGKPLGKGKFGRVYLAKERSSGFVCALKVLHKSELQQGGVQKQVR---REIEIQSNLR  176
              +G+ LG+G FG VY    +  G    +KV  K+ L++G  +++      E  I   L 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKT-LKEGADEEEREDFLEEASIMKKLD  59

Query  177  HPNVLRLYGHFHDSKRIFLILEFAGRGELYKHLRK-EHRFPEWKAAQYIAQMAAALKYLH  235
            HPN+++L G     + ++++ E+   G+L   LRK + +           Q+A  ++YL 
Sbjct  60   HPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLE  119

Query  236  KKHVMHRDIKPENILVGIHGEIKISDFGWSVHAPNNRRQTMCGTLD----YLPPEMLKPN  291
             K+ +HRD+   N LV  +  +KISDFG S    ++      G       ++ PE LK  
Sbjct  120  SKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLK--  177

Query  292  PQDNYYSEKVDLWSLGVLTYEFL-VGEAPFEDTP-------VMTQRRIARADMTVPSFVS  343
              D  ++ K D+WS GVL +E   +GE P+           +    R+ +     P    
Sbjct  178  --DGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQ-----PENCP  230

Query  344  PEAKDLIKRLLVLDPDKRISLDEIQRH  370
             E  DL+K+    DP+ R +  E+   
Sbjct  231  DELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.317    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00011400

Length=157
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  110     2e-31
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            65.6    4e-14


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 110 bits (277),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 41/110 (37%), Positives = 56/110 (51%), Gaps = 8/110 (7%)

Query  29   APNNRRQTMCGTLDYLPPEMLKPNPQDNYYSEKVDLWSLGVLTYEFLVGEAPFEDTPVMT  88
               +   T  GT  Y+ PE+L  NP    Y  KVD+WSLG + YE L G+ PF       
Sbjct  112  ESGSSLTTFVGTPWYMAPEVLGGNP----YGPKVDVWSLGCILYELLTGKPPFPGINGNE  167

Query  89   QRRIARADM----TVPSFVSPEAKDLIKRLLVLDPDKRISLDEIQRHPWI  134
               +          +PS +S EAKDL+K+LL  DP KR++  +  +HPW 
Sbjct  168  IYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 65.6 bits (161),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 61/142 (43%), Gaps = 21/142 (15%)

Query  2    HRDIKPENILVGIHGEIKISDFGWSVHAPNNRRQTMCGTLD----YLPPEMLKPNPQDNY  57
            HRD+   N LV  +  +KISDFG S    ++      G       ++ PE LK    D  
Sbjct  125  HRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLK----DGK  180

Query  58   YSEKVDLWSLGVLTYEFL-VGEAPFEDTP-------VMTQRRIARADMTVPSFVSPEAKD  109
            ++ K D+WS GVL +E   +GE P+           +    R+ +     P     E  D
Sbjct  181  FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQ-----PENCPDELYD  235

Query  110  LIKRLLVLDPDKRISLDEIQRH  131
            L+K+    DP+ R +  E+   
Sbjct  236  LMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.318    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00017695

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395565 pfam00696, AA_kinase, Amino acid kinase family. This f...  135     4e-38
CDD:426278 pfam01472, PUA, PUA domain. The PUA domain named after...  61.3    8e-13


>CDD:395565 pfam00696, AA_kinase, Amino acid kinase family.  This family 
includes kinases that phosphorylate a variety of amino acid 
substrates, as well as uridylate kinase and carbamate kinase. 
This family includes: Aspartokinase EC:2.7.2.4. Acetylglutamate 
kinase EC:2.7.2.8. Glutamate 5-kinase EC:2.7.2.11. Uridylate 
kinase EC:2.7.4.-. Carbamate kinase EC:2.7.2.2.
Length=232

 Score = 135 bits (342),  Expect = 4e-38, Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 96/218 (44%), Gaps = 15/218 (7%)

Query  21   SILTLIVETAAKLRRDGHNVVLVSS-GAVGVGL-RRMDVDERPKYLP--------RIQAL  70
              L  + +  A L  +G  +V+V   GA   GL   + +  R   L          + AL
Sbjct  16   ERLKRLADEIAALLEEGRKLVVVHGGGAFADGLLALLGLSPRFARLTDAETLEVATMDAL  75

Query  71   AAVGQCRLMSLWDGLFSHLRLPVAQILLTRNDIADRTQYINAQNTFAQLFDMGVIPIVNE  130
             ++G+    +L       + LP AQ+L T     D            +L + GV+P++  
Sbjct  76   GSLGERLNAALLAAGLPAVGLPAAQLLATEAGFIDDVVTRIDTEALEELLEAGVVPVITG  135

Query  131  NDTLAVSEIK-FGDNDTLSAITAAMVKADYLFLMTDVDCLYTSNPRHNPDAKPIEVVSDI  189
               +        G +DTL+A+ A  + AD L ++TDVD +YT++PR  PDAK I  +   
Sbjct  136  FIGIDPEGELGRGSSDTLAALLAEALGADKLIILTDVDGVYTADPRKVPDAKLIPEI---  192

Query  190  SSLEADVSSAGSSLGTGGMSTKIVAAKLATSAGVTTVI  227
             S +  +    S L TGGM  K+ AA  A   G   V+
Sbjct  193  -SYDELLELLASGLATGGMKVKLPAALEAARRGGIPVV  229


>CDD:426278 pfam01472, PUA, PUA domain.  The PUA domain named after Pseudouridine 
synthase and Archaeosine transglycosylase, was detected 
in archaeal and eukaryotic pseudouridine synthases, archaeal 
archaeosine synthases, a family of predicted ATPases that 
may be involved in RNA modification, a family of predicted 
archaeal and bacterial rRNA methylases. Additionally, the 
PUA domain was detected in a family of eukaryotic proteins 
that also contain a domain homologous to the translation initiation 
factor eIF1/SUI1; these proteins may comprise a novel 
type of translation factors. Unexpectedly, the PUA domain 
was detected also in bacterial and yeast glutamate kinases; 
this is compatible with the demonstrated role of these enzymes 
in the regulation of the expression of other genes. It is 
predicted that the PUA domain is an RNA binding domain.
Length=74

 Score = 61.3 bits (150),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 30/84 (36%), Positives = 42/84 (50%), Gaps = 17/84 (20%)

Query  298  GSLYIDHGAYSALLNKASLLPAGVVGVDGHFGQQEAVRLVVVERLSPDSLNGDFLHHGQE  357
            G + +D GA  A+LN ASLL  GVV VDG F + + V +V        +  G        
Sbjct  1    GRVVVDDGAVKAILNGASLLAPGVVRVDGDFRKGDEVVVV--------TEKG--------  44

Query  358  PREVGRALVNYGSTEIARIKGHRS  381
               V   L NY S E+A+I+G ++
Sbjct  45   -ELVAVGLANYSSEELAKIEGGKA  67



Lambda      K        H        a         alpha
   0.317    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00011401

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395565 pfam00696, AA_kinase, Amino acid kinase family. This f...  149     3e-43
CDD:426278 pfam01472, PUA, PUA domain. The PUA domain named after...  61.7    7e-13


>CDD:395565 pfam00696, AA_kinase, Amino acid kinase family.  This family 
includes kinases that phosphorylate a variety of amino acid 
substrates, as well as uridylate kinase and carbamate kinase. 
This family includes: Aspartokinase EC:2.7.2.4. Acetylglutamate 
kinase EC:2.7.2.8. Glutamate 5-kinase EC:2.7.2.11. Uridylate 
kinase EC:2.7.4.-. Carbamate kinase EC:2.7.2.2.
Length=232

 Score = 149 bits (378),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 69/239 (29%), Positives = 107/239 (45%), Gaps = 22/239 (9%)

Query  7    TIVIKLGTSSIVDENTHEPILSILTLIVETAAKLRRDGHNVVLVSS-GAVGVGL-RRMDV  64
             +VIKLG SS+ D+   + +   +       A L  +G  +V+V   GA   GL   + +
Sbjct  2    RVVIKLGGSSLTDKERLKRLADEI-------AALLEEGRKLVVVHGGGAFADGLLALLGL  54

Query  65   DERPKYLP--------RIQALAAVGQCRLMSLWDGLFSHLRLPVAQILLTRNDIADRTQY  116
              R   L          + AL ++G+    +L       + LP AQ+L T     D    
Sbjct  55   SPRFARLTDAETLEVATMDALGSLGERLNAALLAAGLPAVGLPAAQLLATEAGFIDDVVT  114

Query  117  INAQNTFAQLFDMGVIPIVNENDTLAVSEIK-FGDNDTLSAITAAMVKADYLFLMTDVDC  175
                    +L + GV+P++     +        G +DTL+A+ A  + AD L ++TDVD 
Sbjct  115  RIDTEALEELLEAGVVPVITGFIGIDPEGELGRGSSDTLAALLAEALGADKLIILTDVDG  174

Query  176  LYTSNPRHNPDAKPIEVVSDISSLEADVSSAGSSLGTGGMSTKIVAAKLATSAGVTTVI  234
            +YT++PR  PDAK I  +    S +  +    S L TGGM  K+ AA  A   G   V+
Sbjct  175  VYTADPRKVPDAKLIPEI----SYDELLELLASGLATGGMKVKLPAALEAARRGGIPVV  229


>CDD:426278 pfam01472, PUA, PUA domain.  The PUA domain named after Pseudouridine 
synthase and Archaeosine transglycosylase, was detected 
in archaeal and eukaryotic pseudouridine synthases, archaeal 
archaeosine synthases, a family of predicted ATPases that 
may be involved in RNA modification, a family of predicted 
archaeal and bacterial rRNA methylases. Additionally, the 
PUA domain was detected in a family of eukaryotic proteins 
that also contain a domain homologous to the translation initiation 
factor eIF1/SUI1; these proteins may comprise a novel 
type of translation factors. Unexpectedly, the PUA domain 
was detected also in bacterial and yeast glutamate kinases; 
this is compatible with the demonstrated role of these enzymes 
in the regulation of the expression of other genes. It is 
predicted that the PUA domain is an RNA binding domain.
Length=74

 Score = 61.7 bits (151),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 30/84 (36%), Positives = 42/84 (50%), Gaps = 17/84 (20%)

Query  305  GSLYIDHGAYSALLNKASLLPAGVVGVDGHFGQQEAVRLVVVERLSPDSLNGDFLHHGQE  364
            G + +D GA  A+LN ASLL  GVV VDG F + + V +V        +  G        
Sbjct  1    GRVVVDDGAVKAILNGASLLAPGVVRVDGDFRKGDEVVVV--------TEKG--------  44

Query  365  PREVGRALVNYGSTEIARIKGHRS  388
               V   L NY S E+A+I+G ++
Sbjct  45   -ELVAVGLANYSSEELAKIEGGKA  67



Lambda      K        H        a         alpha
   0.317    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00011398

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  80.8    3e-20
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            74.1    2e-17


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 80.8 bits (200),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 8/93 (9%)

Query  42   APNNRRQTMCGTLDYLPPEMLKPNPQDNYYSEKVDLWSLGVLTYEFLVGEAPFEDTPVMT  101
               +   T  GT  Y+ PE+L  NP    Y  KVD+WSLG + YE L G+ PF       
Sbjct  112  ESGSSLTTFVGTPWYMAPEVLGGNP----YGPKVDVWSLGCILYELLTGKPPFPGINGNE  167

Query  102  QRRIARADM----TVPSFVSPEAKDLIKRVCEP  130
               +          +PS +S EAKDL+K++ + 
Sbjct  168  IYELIIDQPYAFPELPSNLSEEAKDLLKKLLKK  200


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 74.1 bits (183),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 9/100 (9%)

Query  2    AAALKYLHKKHVMHRDIKPENILVGIHGEIKISDFGWSVHAPNNRRQTMCGTLD----YL  57
            A  ++YL  K+ +HRD+   N LV  +  +KISDFG S    ++      G       ++
Sbjct  112  AKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM  171

Query  58   PPEMLKPNPQDNYYSEKVDLWSLGVLTYEFL-VGEAPFED  96
             PE LK    D  ++ K D+WS GVL +E   +GE P+  
Sbjct  172  APESLK----DGKFTSKSDVWSFGVLLWEIFTLGEQPYPG  207



Lambda      K        H        a         alpha
   0.320    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00011402

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395565 pfam00696, AA_kinase, Amino acid kinase family. This f...  80.5    7e-20


>CDD:395565 pfam00696, AA_kinase, Amino acid kinase family.  This family 
includes kinases that phosphorylate a variety of amino acid 
substrates, as well as uridylate kinase and carbamate kinase. 
This family includes: Aspartokinase EC:2.7.2.4. Acetylglutamate 
kinase EC:2.7.2.8. Glutamate 5-kinase EC:2.7.2.11. Uridylate 
kinase EC:2.7.4.-. Carbamate kinase EC:2.7.2.2.
Length=232

 Score = 80.5 bits (199),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 17/147 (12%)

Query  7    TIVIKLGTSSIVDENTHEPILSILTLIVETAAKLRRDGHNVVLVSS-GAVGVGL-RRMDV  64
             +VIKLG SS+ D+   + +   +       A L  +G  +V+V   GA   GL   + +
Sbjct  2    RVVIKLGGSSLTDKERLKRLADEI-------AALLEEGRKLVVVHGGGAFADGLLALLGL  54

Query  65   DERPKYLP--------RIQALAAVGQCRLMSLWDGLFSHLRLPVAQILLTRNDIADRTQY  116
              R   L          + AL ++G+    +L       + LP AQ+L T     D    
Sbjct  55   SPRFARLTDAETLEVATMDALGSLGERLNAALLAAGLPAVGLPAAQLLATEAGFIDDVVT  114

Query  117  INAQNTFAQLFDMGVIPIVNENDTLAV  143
                    +L + GV+P++     +  
Sbjct  115  RIDTEALEELLEAGVVPVITGFIGIDP  141



Lambda      K        H        a         alpha
   0.322    0.136    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00017697

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426278 pfam01472, PUA, PUA domain. The PUA domain named after...  62.9    8e-14
CDD:395565 pfam00696, AA_kinase, Amino acid kinase family. This f...  58.9    5e-11


>CDD:426278 pfam01472, PUA, PUA domain.  The PUA domain named after Pseudouridine 
synthase and Archaeosine transglycosylase, was detected 
in archaeal and eukaryotic pseudouridine synthases, archaeal 
archaeosine synthases, a family of predicted ATPases that 
may be involved in RNA modification, a family of predicted 
archaeal and bacterial rRNA methylases. Additionally, the 
PUA domain was detected in a family of eukaryotic proteins 
that also contain a domain homologous to the translation initiation 
factor eIF1/SUI1; these proteins may comprise a novel 
type of translation factors. Unexpectedly, the PUA domain 
was detected also in bacterial and yeast glutamate kinases; 
this is compatible with the demonstrated role of these enzymes 
in the regulation of the expression of other genes. It is 
predicted that the PUA domain is an RNA binding domain.
Length=74

 Score = 62.9 bits (154),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 30/84 (36%), Positives = 42/84 (50%), Gaps = 17/84 (20%)

Query  145  GSLYIDHGAYSALLNKASLLPAGVVGVDGHFGQQEAVRLVVVERLSPDSLNGDFLHHGQE  204
            G + +D GA  A+LN ASLL  GVV VDG F + + V +V        +  G        
Sbjct  1    GRVVVDDGAVKAILNGASLLAPGVVRVDGDFRKGDEVVVV--------TEKG--------  44

Query  205  PREVGRALVNYGSTEIARIKGHRS  228
               V   L NY S E+A+I+G ++
Sbjct  45   -ELVAVGLANYSSEELAKIEGGKA  67


>CDD:395565 pfam00696, AA_kinase, Amino acid kinase family.  This family 
includes kinases that phosphorylate a variety of amino acid 
substrates, as well as uridylate kinase and carbamate kinase. 
This family includes: Aspartokinase EC:2.7.2.4. Acetylglutamate 
kinase EC:2.7.2.8. Glutamate 5-kinase EC:2.7.2.11. Uridylate 
kinase EC:2.7.4.-. Carbamate kinase EC:2.7.2.2.
Length=232

 Score = 58.9 bits (143),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query  1    MVKADYLFLMTDVDCLYTSNPRHNPDAKPIEVVSDISSLEADVSSAGSSLGTGGMSTKIV  60
             + AD L ++TDVD +YT++PR  PDAK I  +    S +  +    S L TGGM  K+ 
Sbjct  160  ALGADKLIILTDVDGVYTADPRKVPDAKLIPEI----SYDELLELLASGLATGGMKVKLP  215

Query  61   AAKLATSAGVTTVI  74
            AA  A   G   V+
Sbjct  216  AALEAARRGGIPVV  229



Lambda      K        H        a         alpha
   0.315    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00017698

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395565 pfam00696, AA_kinase, Amino acid kinase family. This f...  149     3e-43
CDD:426278 pfam01472, PUA, PUA domain. The PUA domain named after...  61.7    7e-13


>CDD:395565 pfam00696, AA_kinase, Amino acid kinase family.  This family 
includes kinases that phosphorylate a variety of amino acid 
substrates, as well as uridylate kinase and carbamate kinase. 
This family includes: Aspartokinase EC:2.7.2.4. Acetylglutamate 
kinase EC:2.7.2.8. Glutamate 5-kinase EC:2.7.2.11. Uridylate 
kinase EC:2.7.4.-. Carbamate kinase EC:2.7.2.2.
Length=232

 Score = 149 bits (378),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 69/239 (29%), Positives = 107/239 (45%), Gaps = 22/239 (9%)

Query  7    TIVIKLGTSSIVDENTHEPILSILTLIVETAAKLRRDGHNVVLVSS-GAVGVGL-RRMDV  64
             +VIKLG SS+ D+   + +   +       A L  +G  +V+V   GA   GL   + +
Sbjct  2    RVVIKLGGSSLTDKERLKRLADEI-------AALLEEGRKLVVVHGGGAFADGLLALLGL  54

Query  65   DERPKYLP--------RIQALAAVGQCRLMSLWDGLFSHLRLPVAQILLTRNDIADRTQY  116
              R   L          + AL ++G+    +L       + LP AQ+L T     D    
Sbjct  55   SPRFARLTDAETLEVATMDALGSLGERLNAALLAAGLPAVGLPAAQLLATEAGFIDDVVT  114

Query  117  INAQNTFAQLFDMGVIPIVNENDTLAVSEIK-FGDNDTLSAITAAMVKADYLFLMTDVDC  175
                    +L + GV+P++     +        G +DTL+A+ A  + AD L ++TDVD 
Sbjct  115  RIDTEALEELLEAGVVPVITGFIGIDPEGELGRGSSDTLAALLAEALGADKLIILTDVDG  174

Query  176  LYTSNPRHNPDAKPIEVVSDISSLEADVSSAGSSLGTGGMSTKIVAAKLATSAGVTTVI  234
            +YT++PR  PDAK I  +    S +  +    S L TGGM  K+ AA  A   G   V+
Sbjct  175  VYTADPRKVPDAKLIPEI----SYDELLELLASGLATGGMKVKLPAALEAARRGGIPVV  229


>CDD:426278 pfam01472, PUA, PUA domain.  The PUA domain named after Pseudouridine 
synthase and Archaeosine transglycosylase, was detected 
in archaeal and eukaryotic pseudouridine synthases, archaeal 
archaeosine synthases, a family of predicted ATPases that 
may be involved in RNA modification, a family of predicted 
archaeal and bacterial rRNA methylases. Additionally, the 
PUA domain was detected in a family of eukaryotic proteins 
that also contain a domain homologous to the translation initiation 
factor eIF1/SUI1; these proteins may comprise a novel 
type of translation factors. Unexpectedly, the PUA domain 
was detected also in bacterial and yeast glutamate kinases; 
this is compatible with the demonstrated role of these enzymes 
in the regulation of the expression of other genes. It is 
predicted that the PUA domain is an RNA binding domain.
Length=74

 Score = 61.7 bits (151),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 30/84 (36%), Positives = 42/84 (50%), Gaps = 17/84 (20%)

Query  305  GSLYIDHGAYSALLNKASLLPAGVVGVDGHFGQQEAVRLVVVERLSPDSLNGDFLHHGQE  364
            G + +D GA  A+LN ASLL  GVV VDG F + + V +V        +  G        
Sbjct  1    GRVVVDDGAVKAILNGASLLAPGVVRVDGDFRKGDEVVVV--------TEKG--------  44

Query  365  PREVGRALVNYGSTEIARIKGHRS  388
               V   L NY S E+A+I+G ++
Sbjct  45   -ELVAVGLANYSSEELAKIEGGKA  67



Lambda      K        H        a         alpha
   0.317    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00017699

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395565 pfam00696, AA_kinase, Amino acid kinase family. This f...  95.5    2e-25


>CDD:395565 pfam00696, AA_kinase, Amino acid kinase family.  This family 
includes kinases that phosphorylate a variety of amino acid 
substrates, as well as uridylate kinase and carbamate kinase. 
This family includes: Aspartokinase EC:2.7.2.4. Acetylglutamate 
kinase EC:2.7.2.8. Glutamate 5-kinase EC:2.7.2.11. Uridylate 
kinase EC:2.7.4.-. Carbamate kinase EC:2.7.2.2.
Length=232

 Score = 95.5 bits (238),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 42/170 (25%), Positives = 70/170 (41%), Gaps = 18/170 (11%)

Query  7    TIVIKLGTSSIVDENTHEPILSILTLIVETAAKLRRDGHNVVLVSS-GAVGVGL-RRMDV  64
             +VIKLG SS+ D+   + +   +       A L  +G  +V+V   GA   GL   + +
Sbjct  2    RVVIKLGGSSLTDKERLKRLADEI-------AALLEEGRKLVVVHGGGAFADGLLALLGL  54

Query  65   DERPKYLP--------RIQALAAVGQCRLMSLWDGLFSHLRLPVAQILLTRNDIADRTQY  116
              R   L          + AL ++G+    +L       + LP AQ+L T     D    
Sbjct  55   SPRFARLTDAETLEVATMDALGSLGERLNAALLAAGLPAVGLPAAQLLATEAGFIDDVVT  114

Query  117  INAQNTFAQLFDMGVIPIVNENDTLAVSVIK-FGDNDTLSAITAAMVKAD  165
                    +L + GV+P++     +        G +DTL+A+ A  + AD
Sbjct  115  RIDTEALEELLEAGVVPVITGFIGIDPEGELGRGSSDTLAALLAEALGAD  164



Lambda      K        H        a         alpha
   0.322    0.136    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00011404

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  113     6e-31


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 113 bits (285),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 98/214 (46%), Gaps = 14/214 (7%)

Query  1    MSAEKVSVLRALNATIIRTPNEAAYDSPESHIGVAKRLEKEIPNAHILDQYGNVNNPLAH  60
                K+ ++RAL A ++    +  YD   +    A+ L  E P A+ ++QY N  N   +
Sbjct  89   APPGKLLLMRALGAEVVLVGGD--YDEAVAA---ARELAAEGPGAYYINQYDNPLNIEGY  143

Query  61   ELGTAEEIWTQTNGKISAIVAGAGTGGTITGLARGLKKHNPNVKVIAADPHGSIL---AV  117
                  EI  Q  G   A+V   G GG I G+ARGLK+  P+V+VI  +P G+     ++
Sbjct  144  G-TIGLEILEQLGGDPDAVVVPVGGGGLIAGIARGLKELGPDVRVIGVEPEGAPALARSL  202

Query  118  PADLNKEHENEPYKVEGIGYDFIPQVLDQSVVDKWYKTG----DRESFQYARRLIAEEGL  173
             A             +G+G    P  L   ++D++        D E+ +  R L   EG+
Sbjct  203  AAGRPVPVPVADTIADGLGVGDEPGALALDLLDEYVGEVVTVSDEEALEAMRLLARREGI  262

Query  174  LVGGSSGSAISALVQAAADHTFTKDDVVVVILPD  207
            +V  SS +A++AL  A A       D VVV+L  
Sbjct  263  VVEPSSAAALAALKLALAGE-LKGGDRVVVVLTG  295



Lambda      K        H        a         alpha
   0.313    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00011405

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  113     6e-31


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 113 bits (285),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 98/214 (46%), Gaps = 14/214 (7%)

Query  1    MSAEKVSVLRALNATIIRTPNEAAYDSPESHIGVAKRLEKEIPNAHILDQYGNVNNPLAH  60
                K+ ++RAL A ++    +  YD   +    A+ L  E P A+ ++QY N  N   +
Sbjct  89   APPGKLLLMRALGAEVVLVGGD--YDEAVAA---ARELAAEGPGAYYINQYDNPLNIEGY  143

Query  61   ELGTAEEIWTQTNGKISAIVAGAGTGGTITGLARGLKKHNPNVKVIAADPHGSIL---AV  117
                  EI  Q  G   A+V   G GG I G+ARGLK+  P+V+VI  +P G+     ++
Sbjct  144  G-TIGLEILEQLGGDPDAVVVPVGGGGLIAGIARGLKELGPDVRVIGVEPEGAPALARSL  202

Query  118  PADLNKEHENEPYKVEGIGYDFIPQVLDQSVVDKWYKTG----DRESFQYARRLIAEEGL  173
             A             +G+G    P  L   ++D++        D E+ +  R L   EG+
Sbjct  203  AAGRPVPVPVADTIADGLGVGDEPGALALDLLDEYVGEVVTVSDEEALEAMRLLARREGI  262

Query  174  LVGGSSGSAISALVQAAADHTFTKDDVVVVILPD  207
            +V  SS +A++AL  A A       D VVV+L  
Sbjct  263  VVEPSSAAALAALKLALAGE-LKGGDRVVVVLTG  295



Lambda      K        H        a         alpha
   0.313    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00011406

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462797 pfam09439, SRPRB, Signal recognition particle receptor...  103     6e-27


>CDD:462797 pfam09439, SRPRB, Signal recognition particle receptor beta subunit. 
 The beta subunit of the signal recognition particle 
receptor (SRP) is a transmembrane GTPase which anchors the 
alpha subunit to the endoplasmic reticulum membrane.
Length=181

 Score = 103 bits (258),  Expect = 6e-27, Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 95/227 (42%), Gaps = 54/227 (24%)

Query  89   FLLLGPSGAGKTALLSLLESKTSRLAKATQTTHTSQTSTSAIVSLPPSVPTASNRYRSVN  148
             ++ G   +GKT+L +LL + + R                 + S  PS   A+ RY    
Sbjct  6    VIIAGLCDSGKTSLFTLLTTDSVRPT---------------VTSQEPS---AAYRYMLNK  47

Query  149  DYSVKDVSKNPVRYRLKDTPGHGKLREAQGLSELVSMATAKDKKLKLRAVIFMVDTAALT  208
              S            L D PGH KLR    L E     T KD    L+ ++F+VD+    
Sbjct  48   GNSFT----------LIDFPGHVKLR--YKLLE-----TLKDSS-SLKGIVFVVDSTIFP  89

Query  209  EENTLRDTASYLHDVLLALQKRALKRGKSSAKVASEIPVLVAANKQDLFTALPPGSVREK  268
            +E  + DTA +L+D+L   +                I +L+A NKQ+ FTA PP  +++ 
Sbjct  90   KE--VTDTAEFLYDILSITELLKNG-----------IDILIACNKQESFTARPPKKIKQA  136

Query  269  LETEIDRIRKSKSKGLMNASEDTATVEDDDTLGSIDAQDNFSFRLLE  315
            LE EI+ IR+ +SK L           +D +         F F  LE
Sbjct  137  LEKEINTIRERRSKALSGLDGS-----EDLSAVLGKKGKGFKFDQLE  178



Lambda      K        H        a         alpha
   0.315    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00011408

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00011407

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  113     6e-31


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 113 bits (285),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 98/214 (46%), Gaps = 14/214 (7%)

Query  1    MSAEKVSVLRALNATIIRTPNEAAYDSPESHIGVAKRLEKEIPNAHILDQYGNVNNPLAH  60
                K+ ++RAL A ++    +  YD   +    A+ L  E P A+ ++QY N  N   +
Sbjct  89   APPGKLLLMRALGAEVVLVGGD--YDEAVAA---ARELAAEGPGAYYINQYDNPLNIEGY  143

Query  61   ELGTAEEIWTQTNGKISAIVAGAGTGGTITGLARGLKKHNPNVKVIAADPHGSIL---AV  117
                  EI  Q  G   A+V   G GG I G+ARGLK+  P+V+VI  +P G+     ++
Sbjct  144  G-TIGLEILEQLGGDPDAVVVPVGGGGLIAGIARGLKELGPDVRVIGVEPEGAPALARSL  202

Query  118  PADLNKEHENEPYKVEGIGYDFIPQVLDQSVVDKWYKTG----DRESFQYARRLIAEEGL  173
             A             +G+G    P  L   ++D++        D E+ +  R L   EG+
Sbjct  203  AAGRPVPVPVADTIADGLGVGDEPGALALDLLDEYVGEVVTVSDEEALEAMRLLARREGI  262

Query  174  LVGGSSGSAISALVQAAADHTFTKDDVVVVILPD  207
            +V  SS +A++AL  A A       D VVV+L  
Sbjct  263  VVEPSSAAALAALKLALAGE-LKGGDRVVVVLTG  295



Lambda      K        H        a         alpha
   0.313    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00017700

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  113     6e-31


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 113 bits (285),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 98/214 (46%), Gaps = 14/214 (7%)

Query  1    MSAEKVSVLRALNATIIRTPNEAAYDSPESHIGVAKRLEKEIPNAHILDQYGNVNNPLAH  60
                K+ ++RAL A ++    +  YD   +    A+ L  E P A+ ++QY N  N   +
Sbjct  89   APPGKLLLMRALGAEVVLVGGD--YDEAVAA---ARELAAEGPGAYYINQYDNPLNIEGY  143

Query  61   ELGTAEEIWTQTNGKISAIVAGAGTGGTITGLARGLKKHNPNVKVIAADPHGSIL---AV  117
                  EI  Q  G   A+V   G GG I G+ARGLK+  P+V+VI  +P G+     ++
Sbjct  144  G-TIGLEILEQLGGDPDAVVVPVGGGGLIAGIARGLKELGPDVRVIGVEPEGAPALARSL  202

Query  118  PADLNKEHENEPYKVEGIGYDFIPQVLDQSVVDKWYKTG----DRESFQYARRLIAEEGL  173
             A             +G+G    P  L   ++D++        D E+ +  R L   EG+
Sbjct  203  AAGRPVPVPVADTIADGLGVGDEPGALALDLLDEYVGEVVTVSDEEALEAMRLLARREGI  262

Query  174  LVGGSSGSAISALVQAAADHTFTKDDVVVVILPD  207
            +V  SS +A++AL  A A       D VVV+L  
Sbjct  263  VVEPSSAAALAALKLALAGE-LKGGDRVVVVLTG  295



Lambda      K        H        a         alpha
   0.313    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00017701

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00011409

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00017702

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00011410

Length=372


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 446726320


Query= TCONS_00011411

Length=471


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00017703

Length=328


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00017704

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00011412

Length=561


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00011413

Length=556


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 693414592


Query= TCONS_00017705

Length=617
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase. This entry...  138     3e-39
CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               79.4    1e-18


>CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase.  This entry refers 
to the DHHC domain, found in DHHC proteins which are palmitoyltransferases. 
Palmitoylation or, more specifically S-acylation, 
plays important roles in the regulation of protein localization, 
stability, and activity. It is a post-translational 
protein modification that involves the attachment of palmitic 
acid to Cys residues through a thioester linkage. Protein 
acyltransferases (PATs), also known as palmitoyltransferases, 
catalyze this reaction by transferring the palmitoyl 
group from palmitoyl-CoA to the thiol group of Cys residues. 
They are characterized by the presence of a 50-residue-long 
domain called the DHHC domain, which in most but not all cases 
is also cysteine-rich and gets its name from a highly conserved 
DHHC signature tetrapeptide (Asp-His-His-Cys). The Cys 
residue within the DHHC domain forms a stable acyl intermediate 
and transfers the acyl chain to the Cys residues of a 
target protein. Some proteins containing a DHHC domain include 
Drosophila DNZ1 protein, Mouse Abl-philin 2 (Aph2) protein, 
Mammalian ZDHHC9, Yeast ankyrin repeat-containing protein 
AKR1, Yeast Erf2 protein, and Arabidopsis thaliana tip growth 
defective 1.
Length=132

 Score = 138 bits (350),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 7/137 (5%)

Query  450  KFDEENFCVFCMVRKPLRSKHCKRCSRCVAKHDHHCPWIDNCVGANNLRHFVLYIICLEI  509
             FDE  +C  C + KP RSKHC+ C+RCV + DHHCPW++NC+G  N ++F+L+++ L +
Sbjct  1    IFDELKYCSTCNIYKPPRSKHCRVCNRCVLRFDHHCPWLNNCIGKRNHKYFILFLLYLTL  60

Query  510  GIILFLQLTYRYINILPAPVEHACNIINEELCGFVLRDPFTLVLDLWIAIQLVWVTMLCA  569
             +IL+L L+  Y+                     +     +++L +     L+++ +L  
Sbjct  61   YLILYLVLSLYYLV-------KLIESSTLFFFLILFLFSISIILLILSLFFLLFLGILLF  113

Query  570  VQLVQISRNQTTYENMR  586
              L  ISRN TTYE M+
Sbjct  114  FHLYLISRNLTTYEFMK  130


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 79.4 bits (196),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (55%), Gaps = 2/88 (2%)

Query  168  LHLATIDGNAFLLVLLLHQEIPVDVIDQQGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  227
            LHLA  +GN  L+ LLL      ++ D+ G T L  AA  G+   V L L   A+VN  D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLKD  59

Query  228  DGGLTPLHWALVKGSLPCVQKLIEYGAD  255
            + G T LH+A   G L  V+ L+E GAD
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGAD  86


 Score = 74.8 bits (184),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query  136  MWAAQRCHYYIVHLLLQHGADPLLTDVQGYNILHLATIDGNAFLLVLLLHQEIPVDVIDQ  195
              AA+  +  +V LLL++GAD  L D  G   LHLA  +G+  ++ LLL +   V++ D 
Sbjct  2    HLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLL-EHADVNLKD-  59

Query  196  QGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  227
             G T L +AA  G+   V L L  GA++N  D
Sbjct  60   NGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 71.7 bits (176),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 36/95 (38%), Positives = 49/95 (52%), Gaps = 4/95 (4%)

Query  67   IMQIARIGEIGPMQRLFDEKKFTANYQDEEGITPLHWAAINNQYAMCKFLLDNGADVNAK  126
            +   A+ G +  ++ L  E    AN QD+ G T LH AA N    + K LL++ ADVN K
Sbjct  1    LHLAAKNGNLELVKLLL-ENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLK  58

Query  127  GGDSVATPAMWAAQRCHYYIVHLLLQHGADPLLTD  161
                  T   +AA+  H  IV LLL+ GAD  + D
Sbjct  59   DNGR--TALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 61.7 bits (150),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 30/74 (41%), Gaps = 2/74 (3%)

Query  201  LMWAAYKGYPACVDLFLRWGANVNAVDDGGLTPLHWALVKGSLPCVQKLIEYGADRFAKT  260
            L  AA  G    V L L  GA+ N  D  G T LH A   G L  V+ L+E+        
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHA--DVNLK  58

Query  261  RDGKSPATVAGEMN  274
             +G++    A    
Sbjct  59   DNGRTALHYAARSG  72



Lambda      K        H        a         alpha
   0.323    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784574700


Query= TCONS_00011415

Length=397


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00017706

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               79.4    6e-19


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 79.4 bits (196),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (55%), Gaps = 2/88 (2%)

Query  168  LHLATIDGNAFLLVLLLHQEIPVDVIDQQGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  227
            LHLA  +GN  L+ LLL      ++ D+ G T L  AA  G+   V L L   A+VN  D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLKD  59

Query  228  DGGLTPLHWALVKGSLPCVQKLIEYGAD  255
            + G T LH+A   G L  V+ L+E GAD
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGAD  86


 Score = 75.2 bits (185),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query  136  MWAAQRCHYYIVHLLLQHGADPLLTDVQGYNILHLATIDGNAFLLVLLLHQEIPVDVIDQ  195
              AA+  +  +V LLL++GAD  L D  G   LHLA  +G+  ++ LLL +   V++ D 
Sbjct  2    HLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLL-EHADVNLKD-  59

Query  196  QGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  227
             G T L +AA  G+   V L L  GA++N  D
Sbjct  60   NGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 71.7 bits (176),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 36/95 (38%), Positives = 49/95 (52%), Gaps = 4/95 (4%)

Query  67   IMQIARIGEIGPMQRLFDEKKFTANYQDEEGITPLHWAAINNQYAMCKFLLDNGADVNAK  126
            +   A+ G +  ++ L  E    AN QD+ G T LH AA N    + K LL++ ADVN K
Sbjct  1    LHLAAKNGNLELVKLLL-ENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLK  58

Query  127  GGDSVATPAMWAAQRCHYYIVHLLLQHGADPLLTD  161
                  T   +AA+  H  IV LLL+ GAD  + D
Sbjct  59   DNGR--TALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 62.1 bits (151),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 30/74 (41%), Gaps = 2/74 (3%)

Query  201  LMWAAYKGYPACVDLFLRWGANVNAVDDGGLTPLHWALVKGSLPCVQKLIEYGADRFAKT  260
            L  AA  G    V L L  GA+ N  D  G T LH A   G L  V+ L+E+        
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHA--DVNLK  58

Query  261  RDGKSPATVAGEMN  274
             +G++    A    
Sbjct  59   DNGRTALHYAARSG  72



Lambda      K        H        a         alpha
   0.322    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00011417

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               79.4    6e-19


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 79.4 bits (196),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (55%), Gaps = 2/88 (2%)

Query  168  LHLATIDGNAFLLVLLLHQEIPVDVIDQQGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  227
            LHLA  +GN  L+ LLL      ++ D+ G T L  AA  G+   V L L   A+VN  D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLKD  59

Query  228  DGGLTPLHWALVKGSLPCVQKLIEYGAD  255
            + G T LH+A   G L  V+ L+E GAD
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGAD  86


 Score = 75.2 bits (185),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query  136  MWAAQRCHYYIVHLLLQHGADPLLTDVQGYNILHLATIDGNAFLLVLLLHQEIPVDVIDQ  195
              AA+  +  +V LLL++GAD  L D  G   LHLA  +G+  ++ LLL +   V++ D 
Sbjct  2    HLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLL-EHADVNLKD-  59

Query  196  QGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  227
             G T L +AA  G+   V L L  GA++N  D
Sbjct  60   NGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 71.7 bits (176),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 36/95 (38%), Positives = 49/95 (52%), Gaps = 4/95 (4%)

Query  67   IMQIARIGEIGPMQRLFDEKKFTANYQDEEGITPLHWAAINNQYAMCKFLLDNGADVNAK  126
            +   A+ G +  ++ L  E    AN QD+ G T LH AA N    + K LL++ ADVN K
Sbjct  1    LHLAAKNGNLELVKLLL-ENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLK  58

Query  127  GGDSVATPAMWAAQRCHYYIVHLLLQHGADPLLTD  161
                  T   +AA+  H  IV LLL+ GAD  + D
Sbjct  59   DNGR--TALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 62.1 bits (151),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 30/74 (41%), Gaps = 2/74 (3%)

Query  201  LMWAAYKGYPACVDLFLRWGANVNAVDDGGLTPLHWALVKGSLPCVQKLIEYGADRFAKT  260
            L  AA  G    V L L  GA+ N  D  G T LH A   G L  V+ L+E+        
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHA--DVNLK  58

Query  261  RDGKSPATVAGEMN  274
             +G++    A    
Sbjct  59   DNGRTALHYAARSG  72



Lambda      K        H        a         alpha
   0.322    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00017707

Length=397


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00011418

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               75.9    2e-18


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 75.9 bits (187),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (55%), Gaps = 2/88 (2%)

Query  57   LHLATIDGNAFLLVLLLHQEIPVDVIDQQGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  116
            LHLA  +GN  L+ LLL      ++ D+ G T L  AA  G+   V L L   A+VN  D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLKD  59

Query  117  DGGLTPLHWALVKGSLPCVQKLIEYGAD  144
            + G T LH+A   G L  V+ L+E GAD
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGAD  86


 Score = 71.3 bits (175),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query  25   MWAAQRCHYYIVHLLLQHGADPLLTDVQGYNILHLATIDGNAFLLVLLLHQEIPVDVIDQ  84
              AA+  +  +V LLL++GAD  L D  G   LHLA  +G+  ++ LLL +   V++ D 
Sbjct  2    HLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLL-EHADVNLKD-  59

Query  85   QGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  116
             G T L +AA  G+   V L L  GA++N  D
Sbjct  60   NGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 59.4 bits (144),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 30/74 (41%), Gaps = 2/74 (3%)

Query  90   LMWAAYKGYPACVDLFLRWGANVNAVDDGGLTPLHWALVKGSLPCVQKLIEYGADRFAKT  149
            L  AA  G    V L L  GA+ N  D  G T LH A   G L  V+ L+E+        
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHA--DVNLK  58

Query  150  RDGKSPATVAGEMN  163
             +G++    A    
Sbjct  59   DNGRTALHYAARSG  72



Lambda      K        H        a         alpha
   0.324    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00017708

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase. This entry...  140     9e-40
CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               79.4    1e-18


>CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase.  This entry refers 
to the DHHC domain, found in DHHC proteins which are palmitoyltransferases. 
Palmitoylation or, more specifically S-acylation, 
plays important roles in the regulation of protein localization, 
stability, and activity. It is a post-translational 
protein modification that involves the attachment of palmitic 
acid to Cys residues through a thioester linkage. Protein 
acyltransferases (PATs), also known as palmitoyltransferases, 
catalyze this reaction by transferring the palmitoyl 
group from palmitoyl-CoA to the thiol group of Cys residues. 
They are characterized by the presence of a 50-residue-long 
domain called the DHHC domain, which in most but not all cases 
is also cysteine-rich and gets its name from a highly conserved 
DHHC signature tetrapeptide (Asp-His-His-Cys). The Cys 
residue within the DHHC domain forms a stable acyl intermediate 
and transfers the acyl chain to the Cys residues of a 
target protein. Some proteins containing a DHHC domain include 
Drosophila DNZ1 protein, Mouse Abl-philin 2 (Aph2) protein, 
Mammalian ZDHHC9, Yeast ankyrin repeat-containing protein 
AKR1, Yeast Erf2 protein, and Arabidopsis thaliana tip growth 
defective 1.
Length=132

 Score = 140 bits (356),  Expect = 9e-40, Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 7/137 (5%)

Query  450  KFDEENFCVFCMVRKPLRSKHCKRCSRCVAKHDHHCPWIDNCVGANNLRHFVLYIICLEI  509
             FDE  +C  C + KP RSKHC+ C+RCV + DHHCPW++NC+G  N ++F+L+++ L +
Sbjct  1    IFDELKYCSTCNIYKPPRSKHCRVCNRCVLRFDHHCPWLNNCIGKRNHKYFILFLLYLTL  60

Query  510  GIILFLQLTYRYINILPAPVEHACNIINEELCGFVLRDPFTLVLDLWIAIQLVWVTMLCA  569
             +IL+L L+  Y+                     +     +++L +     L+++ +L  
Sbjct  61   YLILYLVLSLYYLV-------KLIESSTLFFFLILFLFSISIILLILSLFFLLFLGILLF  113

Query  570  VQLVQISRNQTTYENMR  586
              L  ISRN TTYE M+
Sbjct  114  FHLYLISRNLTTYEFMK  130


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 79.4 bits (196),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (55%), Gaps = 2/88 (2%)

Query  168  LHLATIDGNAFLLVLLLHQEIPVDVIDQQGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  227
            LHLA  +GN  L+ LLL      ++ D+ G T L  AA  G+   V L L   A+VN  D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLKD  59

Query  228  DGGLTPLHWALVKGSLPCVQKLIEYGAD  255
            + G T LH+A   G L  V+ L+E GAD
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGAD  86


 Score = 75.2 bits (185),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query  136  MWAAQRCHYYIVHLLLQHGADPLLTDVQGYNILHLATIDGNAFLLVLLLHQEIPVDVIDQ  195
              AA+  +  +V LLL++GAD  L D  G   LHLA  +G+  ++ LLL +   V++ D 
Sbjct  2    HLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLL-EHADVNLKD-  59

Query  196  QGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  227
             G T L +AA  G+   V L L  GA++N  D
Sbjct  60   NGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 71.7 bits (176),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 36/95 (38%), Positives = 49/95 (52%), Gaps = 4/95 (4%)

Query  67   IMQIARIGEIGPMQRLFDEKKFTANYQDEEGITPLHWAAINNQYAMCKFLLDNGADVNAK  126
            +   A+ G +  ++ L  E    AN QD+ G T LH AA N    + K LL++ ADVN K
Sbjct  1    LHLAAKNGNLELVKLLL-ENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLK  58

Query  127  GGDSVATPAMWAAQRCHYYIVHLLLQHGADPLLTD  161
                  T   +AA+  H  IV LLL+ GAD  + D
Sbjct  59   DNGR--TALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 62.1 bits (151),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 30/74 (41%), Gaps = 2/74 (3%)

Query  201  LMWAAYKGYPACVDLFLRWGANVNAVDDGGLTPLHWALVKGSLPCVQKLIEYGADRFAKT  260
            L  AA  G    V L L  GA+ N  D  G T LH A   G L  V+ L+E+        
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHA--DVNLK  58

Query  261  RDGKSPATVAGEMN  274
             +G++    A    
Sbjct  59   DNGRTALHYAARSG  72



Lambda      K        H        a         alpha
   0.323    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 937117888


Query= TCONS_00011419

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase. This entry...  140     9e-40
CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               79.4    1e-18


>CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase.  This entry refers 
to the DHHC domain, found in DHHC proteins which are palmitoyltransferases. 
Palmitoylation or, more specifically S-acylation, 
plays important roles in the regulation of protein localization, 
stability, and activity. It is a post-translational 
protein modification that involves the attachment of palmitic 
acid to Cys residues through a thioester linkage. Protein 
acyltransferases (PATs), also known as palmitoyltransferases, 
catalyze this reaction by transferring the palmitoyl 
group from palmitoyl-CoA to the thiol group of Cys residues. 
They are characterized by the presence of a 50-residue-long 
domain called the DHHC domain, which in most but not all cases 
is also cysteine-rich and gets its name from a highly conserved 
DHHC signature tetrapeptide (Asp-His-His-Cys). The Cys 
residue within the DHHC domain forms a stable acyl intermediate 
and transfers the acyl chain to the Cys residues of a 
target protein. Some proteins containing a DHHC domain include 
Drosophila DNZ1 protein, Mouse Abl-philin 2 (Aph2) protein, 
Mammalian ZDHHC9, Yeast ankyrin repeat-containing protein 
AKR1, Yeast Erf2 protein, and Arabidopsis thaliana tip growth 
defective 1.
Length=132

 Score = 140 bits (356),  Expect = 9e-40, Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 7/137 (5%)

Query  450  KFDEENFCVFCMVRKPLRSKHCKRCSRCVAKHDHHCPWIDNCVGANNLRHFVLYIICLEI  509
             FDE  +C  C + KP RSKHC+ C+RCV + DHHCPW++NC+G  N ++F+L+++ L +
Sbjct  1    IFDELKYCSTCNIYKPPRSKHCRVCNRCVLRFDHHCPWLNNCIGKRNHKYFILFLLYLTL  60

Query  510  GIILFLQLTYRYINILPAPVEHACNIINEELCGFVLRDPFTLVLDLWIAIQLVWVTMLCA  569
             +IL+L L+  Y+                     +     +++L +     L+++ +L  
Sbjct  61   YLILYLVLSLYYLV-------KLIESSTLFFFLILFLFSISIILLILSLFFLLFLGILLF  113

Query  570  VQLVQISRNQTTYENMR  586
              L  ISRN TTYE M+
Sbjct  114  FHLYLISRNLTTYEFMK  130


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 79.4 bits (196),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (55%), Gaps = 2/88 (2%)

Query  168  LHLATIDGNAFLLVLLLHQEIPVDVIDQQGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  227
            LHLA  +GN  L+ LLL      ++ D+ G T L  AA  G+   V L L   A+VN  D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLKD  59

Query  228  DGGLTPLHWALVKGSLPCVQKLIEYGAD  255
            + G T LH+A   G L  V+ L+E GAD
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGAD  86


 Score = 75.2 bits (185),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query  136  MWAAQRCHYYIVHLLLQHGADPLLTDVQGYNILHLATIDGNAFLLVLLLHQEIPVDVIDQ  195
              AA+  +  +V LLL++GAD  L D  G   LHLA  +G+  ++ LLL +   V++ D 
Sbjct  2    HLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLL-EHADVNLKD-  59

Query  196  QGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  227
             G T L +AA  G+   V L L  GA++N  D
Sbjct  60   NGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 71.7 bits (176),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 36/95 (38%), Positives = 49/95 (52%), Gaps = 4/95 (4%)

Query  67   IMQIARIGEIGPMQRLFDEKKFTANYQDEEGITPLHWAAINNQYAMCKFLLDNGADVNAK  126
            +   A+ G +  ++ L  E    AN QD+ G T LH AA N    + K LL++ ADVN K
Sbjct  1    LHLAAKNGNLELVKLLL-ENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLK  58

Query  127  GGDSVATPAMWAAQRCHYYIVHLLLQHGADPLLTD  161
                  T   +AA+  H  IV LLL+ GAD  + D
Sbjct  59   DNGR--TALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 62.1 bits (151),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 30/74 (41%), Gaps = 2/74 (3%)

Query  201  LMWAAYKGYPACVDLFLRWGANVNAVDDGGLTPLHWALVKGSLPCVQKLIEYGADRFAKT  260
            L  AA  G    V L L  GA+ N  D  G T LH A   G L  V+ L+E+        
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHA--DVNLK  58

Query  261  RDGKSPATVAGEMN  274
             +G++    A    
Sbjct  59   DNGRTALHYAARSG  72



Lambda      K        H        a         alpha
   0.323    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 937117888


Query= TCONS_00011420

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               79.4    6e-19


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 79.4 bits (196),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (55%), Gaps = 2/88 (2%)

Query  168  LHLATIDGNAFLLVLLLHQEIPVDVIDQQGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  227
            LHLA  +GN  L+ LLL      ++ D+ G T L  AA  G+   V L L   A+VN  D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLKD  59

Query  228  DGGLTPLHWALVKGSLPCVQKLIEYGAD  255
            + G T LH+A   G L  V+ L+E GAD
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGAD  86


 Score = 75.2 bits (185),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query  136  MWAAQRCHYYIVHLLLQHGADPLLTDVQGYNILHLATIDGNAFLLVLLLHQEIPVDVIDQ  195
              AA+  +  +V LLL++GAD  L D  G   LHLA  +G+  ++ LLL +   V++ D 
Sbjct  2    HLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLL-EHADVNLKD-  59

Query  196  QGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  227
             G T L +AA  G+   V L L  GA++N  D
Sbjct  60   NGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 71.7 bits (176),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 36/95 (38%), Positives = 49/95 (52%), Gaps = 4/95 (4%)

Query  67   IMQIARIGEIGPMQRLFDEKKFTANYQDEEGITPLHWAAINNQYAMCKFLLDNGADVNAK  126
            +   A+ G +  ++ L  E    AN QD+ G T LH AA N    + K LL++ ADVN K
Sbjct  1    LHLAAKNGNLELVKLLL-ENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLK  58

Query  127  GGDSVATPAMWAAQRCHYYIVHLLLQHGADPLLTD  161
                  T   +AA+  H  IV LLL+ GAD  + D
Sbjct  59   DNGR--TALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 62.1 bits (151),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 30/74 (41%), Gaps = 2/74 (3%)

Query  201  LMWAAYKGYPACVDLFLRWGANVNAVDDGGLTPLHWALVKGSLPCVQKLIEYGADRFAKT  260
            L  AA  G    V L L  GA+ N  D  G T LH A   G L  V+ L+E+        
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHA--DVNLK  58

Query  261  RDGKSPATVAGEMN  274
             +G++    A    
Sbjct  59   DNGRTALHYAARSG  72



Lambda      K        H        a         alpha
   0.322    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00011421

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase. This entry...  135     3e-38
CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               78.6    2e-18


>CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase.  This entry refers 
to the DHHC domain, found in DHHC proteins which are palmitoyltransferases. 
Palmitoylation or, more specifically S-acylation, 
plays important roles in the regulation of protein localization, 
stability, and activity. It is a post-translational 
protein modification that involves the attachment of palmitic 
acid to Cys residues through a thioester linkage. Protein 
acyltransferases (PATs), also known as palmitoyltransferases, 
catalyze this reaction by transferring the palmitoyl 
group from palmitoyl-CoA to the thiol group of Cys residues. 
They are characterized by the presence of a 50-residue-long 
domain called the DHHC domain, which in most but not all cases 
is also cysteine-rich and gets its name from a highly conserved 
DHHC signature tetrapeptide (Asp-His-His-Cys). The Cys 
residue within the DHHC domain forms a stable acyl intermediate 
and transfers the acyl chain to the Cys residues of a 
target protein. Some proteins containing a DHHC domain include 
Drosophila DNZ1 protein, Mouse Abl-philin 2 (Aph2) protein, 
Mammalian ZDHHC9, Yeast ankyrin repeat-containing protein 
AKR1, Yeast Erf2 protein, and Arabidopsis thaliana tip growth 
defective 1.
Length=132

 Score = 135 bits (343),  Expect = 3e-38, Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 7/137 (5%)

Query  339  KFDEENFCVFCMVRKPLRSKHCKRCSRCVAKHDHHCPWIDNCVGANNLRHFVLYIICLEI  398
             FDE  +C  C + KP RSKHC+ C+RCV + DHHCPW++NC+G  N ++F+L+++ L +
Sbjct  1    IFDELKYCSTCNIYKPPRSKHCRVCNRCVLRFDHHCPWLNNCIGKRNHKYFILFLLYLTL  60

Query  399  GIILFLQLTYRYINILPAPVEHACNIINEELCGFVLRDPFTLVLDLWIAIQLVWVTMLCA  458
             +IL+L L+  Y+                     +     +++L +     L+++ +L  
Sbjct  61   YLILYLVLSLYYLV-------KLIESSTLFFFLILFLFSISIILLILSLFFLLFLGILLF  113

Query  459  VQLVQISRNQTTYENMR  475
              L  ISRN TTYE M+
Sbjct  114  FHLYLISRNLTTYEFMK  130


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 78.6 bits (194),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (55%), Gaps = 2/88 (2%)

Query  57   LHLATIDGNAFLLVLLLHQEIPVDVIDQQGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  116
            LHLA  +GN  L+ LLL      ++ D+ G T L  AA  G+   V L L   A+VN  D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLKD  59

Query  117  DGGLTPLHWALVKGSLPCVQKLIEYGAD  144
            + G T LH+A   G L  V+ L+E GAD
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGAD  86


 Score = 74.0 bits (182),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query  25   MWAAQRCHYYIVHLLLQHGADPLLTDVQGYNILHLATIDGNAFLLVLLLHQEIPVDVIDQ  84
              AA+  +  +V LLL++GAD  L D  G   LHLA  +G+  ++ LLL +   V++ D 
Sbjct  2    HLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLL-EHADVNLKD-  59

Query  85   QGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  116
             G T L +AA  G+   V L L  GA++N  D
Sbjct  60   NGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 61.3 bits (149),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 30/74 (41%), Gaps = 2/74 (3%)

Query  90   LMWAAYKGYPACVDLFLRWGANVNAVDDGGLTPLHWALVKGSLPCVQKLIEYGADRFAKT  149
            L  AA  G    V L L  GA+ N  D  G T LH A   G L  V+ L+E+        
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHA--DVNLK  58

Query  150  RDGKSPATVAGEMN  163
             +G++    A    
Sbjct  59   DNGRTALHYAARSG  72



Lambda      K        H        a         alpha
   0.325    0.139    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787537860


Query= TCONS_00017710

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase. This entry...  135     6e-40


>CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase.  This entry refers 
to the DHHC domain, found in DHHC proteins which are palmitoyltransferases. 
Palmitoylation or, more specifically S-acylation, 
plays important roles in the regulation of protein localization, 
stability, and activity. It is a post-translational 
protein modification that involves the attachment of palmitic 
acid to Cys residues through a thioester linkage. Protein 
acyltransferases (PATs), also known as palmitoyltransferases, 
catalyze this reaction by transferring the palmitoyl 
group from palmitoyl-CoA to the thiol group of Cys residues. 
They are characterized by the presence of a 50-residue-long 
domain called the DHHC domain, which in most but not all cases 
is also cysteine-rich and gets its name from a highly conserved 
DHHC signature tetrapeptide (Asp-His-His-Cys). The Cys 
residue within the DHHC domain forms a stable acyl intermediate 
and transfers the acyl chain to the Cys residues of a 
target protein. Some proteins containing a DHHC domain include 
Drosophila DNZ1 protein, Mouse Abl-philin 2 (Aph2) protein, 
Mammalian ZDHHC9, Yeast ankyrin repeat-containing protein 
AKR1, Yeast Erf2 protein, and Arabidopsis thaliana tip growth 
defective 1.
Length=132

 Score = 135 bits (341),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 7/137 (5%)

Query  29   KFDEENFCVFCMVRKPLRSKHCKRCSRCVAKHDHHCPWIDNCVGANNLRHFVLYIICLEI  88
             FDE  +C  C + KP RSKHC+ C+RCV + DHHCPW++NC+G  N ++F+L+++ L +
Sbjct  1    IFDELKYCSTCNIYKPPRSKHCRVCNRCVLRFDHHCPWLNNCIGKRNHKYFILFLLYLTL  60

Query  89   GIILFLQLTYRYINILPAPVEHACNIINEELCGFVLRDPFTLVLDLWIAIQLVWVTMLCA  148
             +IL+L L+  Y+                     +     +++L +     L+++ +L  
Sbjct  61   YLILYLVLSLYYLV-------KLIESSTLFFFLILFLFSISIILLILSLFFLLFLGILLF  113

Query  149  VQLVQISRNQTTYENMR  165
              L  ISRN TTYE M+
Sbjct  114  FHLYLISRNLTTYEFMK  130



Lambda      K        H        a         alpha
   0.325    0.139    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00017709

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase. This entry...  135     6e-40


>CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase.  This entry refers 
to the DHHC domain, found in DHHC proteins which are palmitoyltransferases. 
Palmitoylation or, more specifically S-acylation, 
plays important roles in the regulation of protein localization, 
stability, and activity. It is a post-translational 
protein modification that involves the attachment of palmitic 
acid to Cys residues through a thioester linkage. Protein 
acyltransferases (PATs), also known as palmitoyltransferases, 
catalyze this reaction by transferring the palmitoyl 
group from palmitoyl-CoA to the thiol group of Cys residues. 
They are characterized by the presence of a 50-residue-long 
domain called the DHHC domain, which in most but not all cases 
is also cysteine-rich and gets its name from a highly conserved 
DHHC signature tetrapeptide (Asp-His-His-Cys). The Cys 
residue within the DHHC domain forms a stable acyl intermediate 
and transfers the acyl chain to the Cys residues of a 
target protein. Some proteins containing a DHHC domain include 
Drosophila DNZ1 protein, Mouse Abl-philin 2 (Aph2) protein, 
Mammalian ZDHHC9, Yeast ankyrin repeat-containing protein 
AKR1, Yeast Erf2 protein, and Arabidopsis thaliana tip growth 
defective 1.
Length=132

 Score = 135 bits (341),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 7/137 (5%)

Query  29   KFDEENFCVFCMVRKPLRSKHCKRCSRCVAKHDHHCPWIDNCVGANNLRHFVLYIICLEI  88
             FDE  +C  C + KP RSKHC+ C+RCV + DHHCPW++NC+G  N ++F+L+++ L +
Sbjct  1    IFDELKYCSTCNIYKPPRSKHCRVCNRCVLRFDHHCPWLNNCIGKRNHKYFILFLLYLTL  60

Query  89   GIILFLQLTYRYINILPAPVEHACNIINEELCGFVLRDPFTLVLDLWIAIQLVWVTMLCA  148
             +IL+L L+  Y+                     +     +++L +     L+++ +L  
Sbjct  61   YLILYLVLSLYYLV-------KLIESSTLFFFLILFLFSISIILLILSLFFLLFLGILLF  113

Query  149  VQLVQISRNQTTYENMR  165
              L  ISRN TTYE M+
Sbjct  114  FHLYLISRNLTTYEFMK  130



Lambda      K        H        a         alpha
   0.325    0.139    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00011422

Length=710
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               79.4    1e-18


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 79.4 bits (196),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (55%), Gaps = 2/88 (2%)

Query  168  LHLATIDGNAFLLVLLLHQEIPVDVIDQQGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  227
            LHLA  +GN  L+ LLL      ++ D+ G T L  AA  G+   V L L   A+VN  D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLKD  59

Query  228  DGGLTPLHWALVKGSLPCVQKLIEYGAD  255
            + G T LH+A   G L  V+ L+E GAD
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGAD  86


 Score = 75.2 bits (185),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query  136  MWAAQRCHYYIVHLLLQHGADPLLTDVQGYNILHLATIDGNAFLLVLLLHQEIPVDVIDQ  195
              AA+  +  +V LLL++GAD  L D  G   LHLA  +G+  ++ LLL +   V++ D 
Sbjct  2    HLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLL-EHADVNLKD-  59

Query  196  QGHTGLMWAAYKGYPACVDLFLRWGANVNAVD  227
             G T L +AA  G+   V L L  GA++N  D
Sbjct  60   NGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 71.7 bits (176),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 36/95 (38%), Positives = 49/95 (52%), Gaps = 4/95 (4%)

Query  67   IMQIARIGEIGPMQRLFDEKKFTANYQDEEGITPLHWAAINNQYAMCKFLLDNGADVNAK  126
            +   A+ G +  ++ L  E    AN QD+ G T LH AA N    + K LL++ ADVN K
Sbjct  1    LHLAAKNGNLELVKLLL-ENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLK  58

Query  127  GGDSVATPAMWAAQRCHYYIVHLLLQHGADPLLTD  161
                  T   +AA+  H  IV LLL+ GAD  + D
Sbjct  59   DNGR--TALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 62.1 bits (151),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 30/74 (41%), Gaps = 2/74 (3%)

Query  201  LMWAAYKGYPACVDLFLRWGANVNAVDDGGLTPLHWALVKGSLPCVQKLIEYGADRFAKT  260
            L  AA  G    V L L  GA+ N  D  G T LH A   G L  V+ L+E+        
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHA--DVNLK  58

Query  261  RDGKSPATVAGEMN  274
             +G++    A    
Sbjct  59   DNGRTALHYAARSG  72



Lambda      K        H        a         alpha
   0.322    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 909945430


Query= TCONS_00017711

Length=197


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00011423

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.142    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00011424

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00017712

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00017713

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433204 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADP...  310     3e-106


>CDD:433204 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring). 
 This is family of Rossmann fold oxidoreductases that 
catalyzes the NADPH-dependent hydroxylation of lysine at the 
N6 position, EC:1.14.13.59.
Length=338

 Score = 310 bits (797),  Expect = 3e-106, Method: Composition-based stats.
 Identities = 104/254 (41%), Positives = 137/254 (54%), Gaps = 22/254 (9%)

Query  38   ELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVP  97
            ++HDL+ +G GP +L++A  L +               +    F ERQ +FAWH GML+P
Sbjct  1    QIHDLIGIGIGPFNLSLAALLEE-------------IPELDALFFERQPEFAWHPGMLLP  47

Query  98   GSKMQISFIKDLATLRDPRSSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQ  157
            G+ MQ SF+KDL TLRDP S F+FLNYLH+ GRL  F NL TF P+R EF DY++W A  
Sbjct  48   GATMQTSFLKDLVTLRDPTSPFSFLNYLHEHGRLYSFYNLETFFPSRREFNDYLQWAASH  107

Query  158  FSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMP  217
              + + +G+EV  V P              VR R+   GE +    R +V+  GG   +P
Sbjct  108  LPNRLRFGQEVESVEPDAERGE----PLLRVRVRD-ADGEETTFLARNLVLGTGGEPYIP  162

Query  218  SGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLI  277
                   R+ HSS+Y   +  L   K     IAV+GSGQSAAEIF DL +R P    T +
Sbjct  163  ECARGGERVFHSSEYLERIDRLAAKKR----IAVVGSGQSAAEIFRDLLRRGPAYELTWV  218

Query  278  MRDSAMRPSDDSPL  291
             R     P DDSP 
Sbjct  219  TRSPNFFPLDDSPF  232



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00011427

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00011426

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00017714

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00011425

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00011428

Length=1077
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  92.3    2e-21
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            89.1    5e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 92.3 bits (230),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 55/279 (20%), Positives = 100/279 (36%), Gaps = 74/279 (27%)

Query  704  FEQVELVGTGEFSQVYRVAQAHEMSLSSIFSLPNGAKSPHSLPARVWAVKKSKQPYAGLK  763
            +E +  +G+G F  VY+                 G         ++ A+KK K+     K
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRD-----------TG---------KIVAIKKIKKEKIKKK  40

Query  764  DRERRIREVDVLKALTNSDHVISFVDSWEDSGHLYIQTEFCEEGSLDVFLAQVGLKARLD  823
              +  +RE+ +LK L N  +++   D++ED  +LY+  E+ E GSL   L++ G      
Sbjct  41   KDKNILREIKILKKL-NHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKG---AFS  96

Query  824  DFRIWKILLELSLGLKHIHDSGFIHLDLKPANILITFEGVLKIADFGMAARWPAEDGIEG  883
            +     I+ ++  G             L+  + L TF                       
Sbjct  97   EREAKFIMKQILEG-------------LESGSSLTTF-----------------------  120

Query  884  EGDREYIGPEILMGR-FDKPADIFSLGLIMFE-IAGNVELP---DNGLSWQKLRNGDMSD  938
             G   Y+ PE+L G  +    D++SLG I++E + G    P    N +    +       
Sbjct  121  VGTPWYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFP  180

Query  939  VPSLTWSSE-----TSIFRDASGNPISEEPSFEELCASD  972
                  S E       + +    +P S+  +  +     
Sbjct  181  ELPSNLSEEAKDLLKKLLKK---DP-SKRLTATQALQHP  215


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 89.1 bits (222),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 49/229 (21%)

Query  704  FEQVELVGTGEFSQVYRVAQAHEMSLSSIFSLPNGAKSPHSLPARVWAVKKSKQPYAGLK  763
                E +G G F +VY+                 G      +     AVK  K   A  +
Sbjct  1    LTLGEKLGEGAFGEVYK-GTL------------KGEGENTKIKV---AVKTLK-EGADEE  43

Query  764  DRERRIREVDVLKALTNSDHVISFVDSWEDSGHLYIQTEFCEEGSLDVFL----AQVGLK  819
            +RE  + E  ++K L +  +++  +        LYI TE+   G L  FL     ++ LK
Sbjct  44   EREDFLEEASIMKKL-DHPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLK  102

Query  820  ARLDDFRIWKILLELSLGLKHIHDSGFIHLDLKPANILITFEGVLKIADFGMAARWPAED  879
              L       + L+++ G++++    F+H DL   N L++   V+KI+DFG++       
Sbjct  103  DLL------SMALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLS-------  149

Query  880  GIEGEGDREY------------IGPEILM-GRFDKPADIFSLGLIMFEI  915
              +   D  Y            + PE L  G+F   +D++S G++++EI
Sbjct  150  -RDIYDDDYYRKRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLWEI  197



Lambda      K        H        a         alpha
   0.314    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1388974356


Query= TCONS_00011429

Length=1077
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  92.3    2e-21
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            89.1    5e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 92.3 bits (230),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 55/279 (20%), Positives = 100/279 (36%), Gaps = 74/279 (27%)

Query  704  FEQVELVGTGEFSQVYRVAQAHEMSLSSIFSLPNGAKSPHSLPARVWAVKKSKQPYAGLK  763
            +E +  +G+G F  VY+                 G         ++ A+KK K+     K
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRD-----------TG---------KIVAIKKIKKEKIKKK  40

Query  764  DRERRIREVDVLKALTNSDHVISFVDSWEDSGHLYIQTEFCEEGSLDVFLAQVGLKARLD  823
              +  +RE+ +LK L N  +++   D++ED  +LY+  E+ E GSL   L++ G      
Sbjct  41   KDKNILREIKILKKL-NHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKG---AFS  96

Query  824  DFRIWKILLELSLGLKHIHDSGFIHLDLKPANILITFEGVLKIADFGMAARWPAEDGIEG  883
            +     I+ ++  G             L+  + L TF                       
Sbjct  97   EREAKFIMKQILEG-------------LESGSSLTTF-----------------------  120

Query  884  EGDREYIGPEILMGR-FDKPADIFSLGLIMFE-IAGNVELP---DNGLSWQKLRNGDMSD  938
             G   Y+ PE+L G  +    D++SLG I++E + G    P    N +    +       
Sbjct  121  VGTPWYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFP  180

Query  939  VPSLTWSSE-----TSIFRDASGNPISEEPSFEELCASD  972
                  S E       + +    +P S+  +  +     
Sbjct  181  ELPSNLSEEAKDLLKKLLKK---DP-SKRLTATQALQHP  215


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 89.1 bits (222),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 49/229 (21%)

Query  704  FEQVELVGTGEFSQVYRVAQAHEMSLSSIFSLPNGAKSPHSLPARVWAVKKSKQPYAGLK  763
                E +G G F +VY+                 G      +     AVK  K   A  +
Sbjct  1    LTLGEKLGEGAFGEVYK-GTL------------KGEGENTKIKV---AVKTLK-EGADEE  43

Query  764  DRERRIREVDVLKALTNSDHVISFVDSWEDSGHLYIQTEFCEEGSLDVFL----AQVGLK  819
            +RE  + E  ++K L +  +++  +        LYI TE+   G L  FL     ++ LK
Sbjct  44   EREDFLEEASIMKKL-DHPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLK  102

Query  820  ARLDDFRIWKILLELSLGLKHIHDSGFIHLDLKPANILITFEGVLKIADFGMAARWPAED  879
              L       + L+++ G++++    F+H DL   N L++   V+KI+DFG++       
Sbjct  103  DLL------SMALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLS-------  149

Query  880  GIEGEGDREY------------IGPEILM-GRFDKPADIFSLGLIMFEI  915
              +   D  Y            + PE L  G+F   +D++S G++++EI
Sbjct  150  -RDIYDDDYYRKRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLWEI  197



Lambda      K        H        a         alpha
   0.314    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1388974356


Query= TCONS_00011430

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.492    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00011431

Length=1026
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharid...  111     1e-29
CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  105     2e-27
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  58.8    4e-11


>CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding 
(OB)-fold.  This family is found towards the C-terminus of 
the DEAD-box helicases (pfam00270). In these helicases it 
is apparently always found in association with pfam04408. There 
do seem to be a couple of instances where it occurs by itself. 
The structure Structure 3i4u adopts an OB-fold. helicases 
(pfam00270). In these helicases it is apparently always 
found in association with pfam04408. This C-terminal domain 
of the yeast helicase contains an oligonucleotide/oligosaccharide-binding 
(OB)-fold which seems to be placed at the entrance 
of the putative nucleic acid cavity. It also constitutes 
the binding site for the G-patch-containing domain of Pfa1p. 
When found on DEAH/RHA helicases, this domain is central 
to the regulation of the helicase activity through its binding 
of both RNA and G-patch domain proteins.
Length=82

 Score = 111 bits (279),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 36/82 (44%), Positives = 50/82 (61%), Gaps = 3/82 (4%)

Query  920  IQKAITAGFFPNAARLQRGGDSYRTVKNGQTVYLHPSSTLFEV---NPRWVIYYELVLTS  976
            ++ A+ AG +PN AR    G  Y T+ + Q V++HPSS LF      P WV+Y ELV T+
Sbjct  1    LRAALAAGLYPNVARRDPKGKGYTTLSDNQRVFIHPSSVLFNEKTFPPEWVVYQELVETT  60

Query  977  KEYMRSNMPLQPEWLVEVAPHY  998
            K Y+R+   + PEWL+  APH 
Sbjct  61   KVYIRTVTAISPEWLLLFAPHI  82


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 105 bits (264),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 43/104 (41%), Positives = 59/104 (57%), Gaps = 13/104 (13%)

Query  771  ALEQLYALGALNDRGELTKIGRQMAEFPTDPMLAKAILAADKYGCVEEVLSIVSML----  826
            ALE LY LGAL++ GELT +GR+MAE P DP LAK +LAA + GC++EVL+IV+ L    
Sbjct  1    ALELLYYLGALDEDGELTPLGRKMAELPLDPRLAKMLLAAAELGCLDEVLTIVAALSVRD  60

Query  827  ---------GEASALFFRPKDKKIHADSARNRFTVKDGGDHLTL  861
                       ++A   R + +     +      +   GDHLTL
Sbjct  61   PFVQPNFLDPRSAAKAARRRRRAADEKARAKFARLDLEGDHLTL  104


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 58.8 bits (143),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 28/135 (21%), Positives = 55/135 (41%), Gaps = 28/135 (21%)

Query  575  ITTVFQIHVSQGPGDILVFLTGQEEIEAAEQSLQETARKLGSKIPEMIICPIYANLPSEL  634
            +  + ++   +  G +L+F   ++ +EA           L  K   + +  ++ +L  E 
Sbjct  3    LEALLELLKKERGGKVLIFSQTKKTLEA---------ELLLEKE-GIKVARLHGDLSQEE  52

Query  635  QAKIFEPTPPKARKVVLATNIAETSLTIDGIVYVIDPGFAKENVFNPRTGMESLVVTPCS  694
            + +I E        V++AT++AE  L +  +  VI+        ++      S +     
Sbjct  53   REEILEDFRKGKIDVLVATDVAERGLDLPDVDLVIN--------YDLPWNPASYI-----  99

Query  695  RASANQRAGRAGRVG  709
                 QR GRAGR G
Sbjct  100  -----QRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.315    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1316764680


Query= TCONS_00011432

Length=1120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharid...  111     1e-29
CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  105     3e-27
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  59.1    5e-11


>CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding 
(OB)-fold.  This family is found towards the C-terminus of 
the DEAD-box helicases (pfam00270). In these helicases it 
is apparently always found in association with pfam04408. There 
do seem to be a couple of instances where it occurs by itself. 
The structure Structure 3i4u adopts an OB-fold. helicases 
(pfam00270). In these helicases it is apparently always 
found in association with pfam04408. This C-terminal domain 
of the yeast helicase contains an oligonucleotide/oligosaccharide-binding 
(OB)-fold which seems to be placed at the entrance 
of the putative nucleic acid cavity. It also constitutes 
the binding site for the G-patch-containing domain of Pfa1p. 
When found on DEAH/RHA helicases, this domain is central 
to the regulation of the helicase activity through its binding 
of both RNA and G-patch domain proteins.
Length=82

 Score = 111 bits (279),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 36/82 (44%), Positives = 50/82 (61%), Gaps = 3/82 (4%)

Query  1014  IQKAITAGFFPNAARLQRGGDSYRTVKNGQTVYLHPSSTLFEV---NPRWVIYYELVLTS  1070
             ++ A+ AG +PN AR    G  Y T+ + Q V++HPSS LF      P WV+Y ELV T+
Sbjct  1     LRAALAAGLYPNVARRDPKGKGYTTLSDNQRVFIHPSSVLFNEKTFPPEWVVYQELVETT  60

Query  1071  KEYMRSNMPLQPEWLVEVAPHY  1092
             K Y+R+   + PEWL+  APH 
Sbjct  61    KVYIRTVTAISPEWLLLFAPHI  82


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 105 bits (263),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 43/104 (41%), Positives = 59/104 (57%), Gaps = 13/104 (13%)

Query  865  ALEQLYALGALNDRGELTKIGRQMAEFPTDPMLAKAILAADKYGCVEEVLSIVSML----  920
            ALE LY LGAL++ GELT +GR+MAE P DP LAK +LAA + GC++EVL+IV+ L    
Sbjct  1    ALELLYYLGALDEDGELTPLGRKMAELPLDPRLAKMLLAAAELGCLDEVLTIVAALSVRD  60

Query  921  ---------GEASALFFRPKDKKIHADSARNRFTVKDGGDHLTL  955
                       ++A   R + +     +      +   GDHLTL
Sbjct  61   PFVQPNFLDPRSAAKAARRRRRAADEKARAKFARLDLEGDHLTL  104


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 59.1 bits (144),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 28/135 (21%), Positives = 55/135 (41%), Gaps = 28/135 (21%)

Query  669  ITTVFQIHVSQGPGDILVFLTGQEEIEAAEQSLQETARKLGSKIPEMIICPIYANLPSEL  728
            +  + ++   +  G +L+F   ++ +EA           L  K   + +  ++ +L  E 
Sbjct  3    LEALLELLKKERGGKVLIFSQTKKTLEA---------ELLLEKE-GIKVARLHGDLSQEE  52

Query  729  QAKIFEPTPPKARKVVLATNIAETSLTIDGIVYVIDPGFAKENVFNPRTGMESLVVTPCS  788
            + +I E        V++AT++AE  L +  +  VI+        ++      S +     
Sbjct  53   REEILEDFRKGKIDVLVATDVAERGLDLPDVDLVIN--------YDLPWNPASYI-----  99

Query  789  RASANQRAGRAGRVG  803
                 QR GRAGR G
Sbjct  100  -----QRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.315    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1428351474


Query= TCONS_00011433

Length=68
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  79.2    3e-22


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 79.2 bits (196),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 33/55 (60%), Gaps = 1/55 (2%)

Query  6   TPAEVAAHNTPDKGLYIIIDNSVYDVTKFIDEHPGGAKILKRVAGKDASKQFWKV  60
           T  E++ HN      ++ I+  VYDVTKF+ EHPGG  ++   AGKDA+  F  +
Sbjct  1   TLEELSKHNGDGD-CWVAINGKVYDVTKFLKEHPGGEDVILSAAGKDATDAFEAI  54



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0816    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00011434

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00011436

Length=84
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  88.8    8e-26


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 88.8 bits (221),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (3%)

Query  6   TPAEVAAHNTPDKGLYIIIDNSVYDVTKFIDEHPGGAKILKRVAGKDASKQFWKY-HNEG  64
           T  E++ HN      ++ I+  VYDVTKF+ EHPGG  ++   AGKDA+  F    H+E 
Sbjct  1   TLEELSKHNGDGD-CWVAINGKVYDVTKFLKEHPGGEDVILSAAGKDATDAFEAIGHSED  59

Query  65  VLKKYSPKLKIGEVK  79
             +K   K +IGE+ 
Sbjct  60  AAEKLLKKYRIGELA  74



Lambda      K        H        a         alpha
   0.314    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00011435

Length=84
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  88.8    8e-26


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 88.8 bits (221),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (3%)

Query  6   TPAEVAAHNTPDKGLYIIIDNSVYDVTKFIDEHPGGAKILKRVAGKDASKQFWKY-HNEG  64
           T  E++ HN      ++ I+  VYDVTKF+ EHPGG  ++   AGKDA+  F    H+E 
Sbjct  1   TLEELSKHNGDGD-CWVAINGKVYDVTKFLKEHPGGEDVILSAAGKDATDAFEAIGHSED  59

Query  65  VLKKYSPKLKIGEVK  79
             +K   K +IGE+ 
Sbjct  60  AAEKLLKKYRIGELA  74



Lambda      K        H        a         alpha
   0.314    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00017715

Length=84
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  86.9    5e-25


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 86.9 bits (216),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 29/75 (39%), Positives = 42/75 (56%), Gaps = 2/75 (3%)

Query  6   TPAEVAAHNTPDKGLYIIIDNSVYDVTKFIDEHPGGAKILKRVAGKDASKQFWKVR-STC  64
           T  E++ HN      ++ I+  VYDVTKF+ EHPGG  ++   AGKDA+  F  +  S  
Sbjct  1   TLEELSKHNGDGD-CWVAINGKVYDVTKFLKEHPGGEDVILSAAGKDATDAFEAIGHSED  59

Query  65  VLKKYSPKLKIGEVK  79
             +K   K +IGE+ 
Sbjct  60  AAEKLLKKYRIGELA  74



Lambda      K        H        a         alpha
   0.316    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00011437

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  64.1    4e-13


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 64.1 bits (156),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 48/210 (23%), Positives = 80/210 (38%), Gaps = 23/210 (11%)

Query  8    RVLFFDVFGTVVQWRTSVSEALRDAAQSALRDPEKNLPDAVRAKASSMTQSDWLDITEEW  67
            + + FD+ GT+      V+EA+ + A            +   AKA      D     E++
Sbjct  2    KAVVFDLDGTLTDGEPVVTEAIAELAS-----------EHPLAKAIVAAAEDLPIPVEDF  50

Query  68   RESYYHFTRNSDLSKPFVSVDEHHYSYLLKLLQAHGLETLFTDAQRWDLALSWHRLAPWP  127
                    R+       +             L+A GL  +  +     +      L  +P
Sbjct  51   TARLLLGKRDWLEELDILRGLVET-------LEAEGLTVVLVELLG--VIALADELKLYP  101

Query  128  DSVRGLELLNRK-FRTCTLSNGNVALLQDLCRH-GSLP-FTEVLSAEHFGAYKPSPKVYG  184
             +   L+ L  +  +   L+  N    + L R  G    F  V+S +  G  KP P++Y 
Sbjct  102  GAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIYL  161

Query  185  GAAERFGLEPGECALVAAHLGDLKAAKACG  214
             A ER G++P E  +V   + D+ AAKA G
Sbjct  162  AALERLGVKPEEVLMVGDGVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.320    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00011438

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  65.3    1e-13


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 65.3 bits (159),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 48/210 (23%), Positives = 80/210 (38%), Gaps = 23/210 (11%)

Query  8    RVLFFDVFGTVVQWRTSVSEALRDAAQSALRDPEKNLPDAVRAKASSMTQSDWLDITEEW  67
            + + FD+ GT+      V+EA+ + A            +   AKA      D     E++
Sbjct  2    KAVVFDLDGTLTDGEPVVTEAIAELAS-----------EHPLAKAIVAAAEDLPIPVEDF  50

Query  68   RESYYHFTRNSDLSKPFVSVDEHHYSYLLKLLQAHGLETLFTDAQRWDLALSWHRLAPWP  127
                    R+       +             L+A GL  +  +     +      L  +P
Sbjct  51   TARLLLGKRDWLEELDILRGLVET-------LEAEGLTVVLVELLG--VIALADELKLYP  101

Query  128  DSVRGLELLNRK-FRTCTLSNGNVALLQDLCRH-GSLP-FTEVLSAEHFGAYKPSPKVYG  184
             +   L+ L  +  +   L+  N    + L R  G    F  V+S +  G  KP P++Y 
Sbjct  102  GAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIYL  161

Query  185  GAAERFGLEPGECALVAAHLGDLKAAKACG  214
             A ER G++P E  +V   + D+ AAKA G
Sbjct  162  AALERLGVKPEEVLMVGDGVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00011439

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00011441

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00011442

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00011440

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00017716

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  228     4e-77
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  92.2    2e-24


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 228 bits (583),  Expect = 4e-77, Method: Composition-based stats.
 Identities = 77/182 (42%), Positives = 107/182 (59%), Gaps = 25/182 (14%)

Query  9    KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI-EDSYRKQVVIDQQSCMLEVLDTAGQEE  67
            KLV++GDGGVGK++L I+   N F E Y PTI  D Y K + +D ++  L++ DTAGQE 
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  68   YTALRDQWIRDGEGFVLVYSITSRASFTRIQKFYNQIKMVKESAHSGSPSGASYLGSPMN  127
            + ALR  + R  +GF+LVY ITSR SF  ++K+  +I    +                  
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVKKWVEEILRHADE-----------------  103

Query  128  APSGPPLPVPVMLVGNKSDKAVERAVSAQEGQALAKDLGCEFVEASAKNCINVEKAFYDV  187
                    VP++LVGNK D   +R VS +EG+ALAK+LG  F+E SAK   NVE+AF ++
Sbjct  104  -------NVPIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEEL  156

Query  188  VR  189
             R
Sbjct  157  AR  158


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 92.2 bits (230),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 65/142 (46%), Gaps = 32/142 (23%)

Query  9    KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVI---DQQSCMLEVLDTAG  64
            K+V+LGD GVGKT+L  +   + F   Y  TI   +  K V+    + +   L + DTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  65   QEEYTALRDQWIRDGEGFVLVYSITSRASFTRIQKFYNQIKMVKESAHSGSPSGASYLGS  124
            QE + +L   + R     +LVY      +F+ ++ +  ++K      ++G+         
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDSR---TFSNLKYWLRELK-----KYAGN---------  103

Query  125  PMNAPSGPPLPVPVMLVGNKSD  146
                        PV+LVGNK D
Sbjct  104  -----------SPVILVGNKID  114



Lambda      K        H        a         alpha
   0.318    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00011443

Length=685
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 230     3e-69
CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-termina...  73.3    1e-16
CDD:465043 pfam16177, ACAS_N, Acetyl-coenzyme A synthetase N-term...  67.1    8e-15


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 230 bits (588),  Expect = 3e-69, Method: Composition-based stats.
 Identities = 120/478 (25%), Positives = 180/478 (38%), Gaps = 65/478 (14%)

Query  69   RHVAAGRGENVAIIWDSPVTGVKEKYTYSQLLDEVEVLAGVLREEGVRKGDVVIIYMPMI  128
               AA   +  A+       G   + TY +L +    LA  LR  GV KGD V I +P  
Sbjct  2    ERQAARTPDKTAL-----EVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNS  56

Query  129  PAALIAALAITRLGAIHSAVFGGFAAKSLAQRIEAAKPRVIMTASCGIEGSKGPVSYRPL  188
            P  ++A LA  + GA++  +     A+ LA  +E +  +V++T                 
Sbjct  57   PEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDD------------ALK  104

Query  189  VEGAIAASSFKPSKTIIWQRDQLRWNNPDKMGGQRNWQRLVKSARMRGVKAGPVPVKSTD  248
            +E  + A        ++   D+      + +  +     +            P P    D
Sbjct  105  LEELLEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPPPP--------PPPPDPDD  156

Query  249  GLYIIYTSGTTGLPKGVFREAGG--HAVGLHLSIKYLFDIHGPGDVMFCASDIGWVVGHS  306
              YIIYTSGTTG PKGV          V     ++      GP D +     +    G S
Sbjct  157  LAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLS  216

Query  307  YILYAPLLVGATTVLFEGKPVGTPDAGTFWRIVEEHKVKVLSTAPTAIRAIRKDDPDNKY  366
              L  PLL GAT VL  G P    D      ++E +KV VL   PT +  + +       
Sbjct  217  LGLLGPLLAGATVVLPPGFP--ALDPAALLELIERYKVTVLYGVPTLLNMLLEAGA----  270

Query  367  FLQVARRGGLRHLKALFLAGERSEPSIVQMFQELLTQHAAPGAMVIDNWWSSESGSPISG  426
              + A    LR    +   G    P + + F+EL       G  +++ +  +E+   ++ 
Sbjct  271  -PKRALLSSLRL---VLSGGAPLPPELARRFRELF------GGALVNGYGLTETTGVVT-  319

Query  427  LALNSAAGLVDQWQPNQDSKPLAVRPGSAGLPMPGFDVRVVDDE-GREVPRGTMGNIVMA  485
                             D        GS G P+PG +V++VDDE G  VP G  G + + 
Sbjct  320  ------------TPLPLDED--LRSLGSVGRPLPGTEVKIVDDETGEPVPPGEPGELCVR  365

Query  486  MPLAPTAFTSLFKDDERFYRGYVKRFNGRWVDTGDAGMIDEDGYIHIMSRSDDIINVA  543
                P        D E     +       W  TGD G  DEDGY+ I+ R  D I + 
Sbjct  366  ---GPGVMKGYLNDPELTAEAFD---EDGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-terminal domain. 
 This is a small domain that is found C terminal to pfam00501. 
It has a central beta sheet core that is flanked by alpha 
helices.
Length=76

 Score = 73.3 bits (181),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 8/83 (10%)

Query  552  IEQAILSHPDIGEASVVGMPDPLKGHLPFAFIQPRGSGPLPARPSAELFHAVNQLVREQI  611
            +E A++SHP + EA+VVG+PD LKG  P AF+  +            L   +   VRE++
Sbjct  2    VESALVSHPAVAEAAVVGVPDELKGEAPVAFVVLK-------PGVELLEEELVAHVREEL  54

Query  612  GAIASLGGIIQGRGMIPKTRSGK  634
            G  A    ++     +PKTRSGK
Sbjct  55   GPYAVPKEVVF-VDELPKTRSGK  76


>CDD:465043 pfam16177, ACAS_N, Acetyl-coenzyme A synthetase N-terminus.  
This domain is found at the N-terminus of many acetyl-coenzyme 
A synthetase enzymes.
Length=55

 Score = 67.1 bits (165),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (44%), Gaps = 8/62 (13%)

Query  5   QTVHAQSLHSPESFWSYHATKLHWHKKPSQTLVRRPKTLPSGVTHEHWSWFPDGEISTTY  64
           + ++ +S+  PE FW   A +L W K   + L         G       WF  G+++  Y
Sbjct  2   EALYRRSIEDPEGFWGEVAKELDWFKPFDKVL--------DGSNGPFAKWFVGGKLNVCY  53

Query  65  NC  66
           NC
Sbjct  54  NC  55



Lambda      K        H        a         alpha
   0.319    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 873075680


Query= TCONS_00011444

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  228     4e-77
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  92.2    2e-24


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 228 bits (583),  Expect = 4e-77, Method: Composition-based stats.
 Identities = 77/182 (42%), Positives = 107/182 (59%), Gaps = 25/182 (14%)

Query  9    KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI-EDSYRKQVVIDQQSCMLEVLDTAGQEE  67
            KLV++GDGGVGK++L I+   N F E Y PTI  D Y K + +D ++  L++ DTAGQE 
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  68   YTALRDQWIRDGEGFVLVYSITSRASFTRIQKFYNQIKMVKESAHSGSPSGASYLGSPMN  127
            + ALR  + R  +GF+LVY ITSR SF  ++K+  +I    +                  
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVKKWVEEILRHADE-----------------  103

Query  128  APSGPPLPVPVMLVGNKSDKAVERAVSAQEGQALAKDLGCEFVEASAKNCINVEKAFYDV  187
                    VP++LVGNK D   +R VS +EG+ALAK+LG  F+E SAK   NVE+AF ++
Sbjct  104  -------NVPIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEEL  156

Query  188  VR  189
             R
Sbjct  157  AR  158


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 92.2 bits (230),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 65/142 (46%), Gaps = 32/142 (23%)

Query  9    KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVI---DQQSCMLEVLDTAG  64
            K+V+LGD GVGKT+L  +   + F   Y  TI   +  K V+    + +   L + DTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  65   QEEYTALRDQWIRDGEGFVLVYSITSRASFTRIQKFYNQIKMVKESAHSGSPSGASYLGS  124
            QE + +L   + R     +LVY      +F+ ++ +  ++K      ++G+         
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDSR---TFSNLKYWLRELK-----KYAGN---------  103

Query  125  PMNAPSGPPLPVPVMLVGNKSD  146
                        PV+LVGNK D
Sbjct  104  -----------SPVILVGNKID  114



Lambda      K        H        a         alpha
   0.318    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00011445

Length=685
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 230     3e-69
CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-termina...  73.3    1e-16
CDD:465043 pfam16177, ACAS_N, Acetyl-coenzyme A synthetase N-term...  67.1    8e-15


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 230 bits (588),  Expect = 3e-69, Method: Composition-based stats.
 Identities = 120/478 (25%), Positives = 180/478 (38%), Gaps = 65/478 (14%)

Query  69   RHVAAGRGENVAIIWDSPVTGVKEKYTYSQLLDEVEVLAGVLREEGVRKGDVVIIYMPMI  128
               AA   +  A+       G   + TY +L +    LA  LR  GV KGD V I +P  
Sbjct  2    ERQAARTPDKTAL-----EVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNS  56

Query  129  PAALIAALAITRLGAIHSAVFGGFAAKSLAQRIEAAKPRVIMTASCGIEGSKGPVSYRPL  188
            P  ++A LA  + GA++  +     A+ LA  +E +  +V++T                 
Sbjct  57   PEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDD------------ALK  104

Query  189  VEGAIAASSFKPSKTIIWQRDQLRWNNPDKMGGQRNWQRLVKSARMRGVKAGPVPVKSTD  248
            +E  + A        ++   D+      + +  +     +            P P    D
Sbjct  105  LEELLEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPPPP--------PPPPDPDD  156

Query  249  GLYIIYTSGTTGLPKGVFREAGG--HAVGLHLSIKYLFDIHGPGDVMFCASDIGWVVGHS  306
              YIIYTSGTTG PKGV          V     ++      GP D +     +    G S
Sbjct  157  LAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLS  216

Query  307  YILYAPLLVGATTVLFEGKPVGTPDAGTFWRIVEEHKVKVLSTAPTAIRAIRKDDPDNKY  366
              L  PLL GAT VL  G P    D      ++E +KV VL   PT +  + +       
Sbjct  217  LGLLGPLLAGATVVLPPGFP--ALDPAALLELIERYKVTVLYGVPTLLNMLLEAGA----  270

Query  367  FLQVARRGGLRHLKALFLAGERSEPSIVQMFQELLTQHAAPGAMVIDNWWSSESGSPISG  426
              + A    LR    +   G    P + + F+EL       G  +++ +  +E+   ++ 
Sbjct  271  -PKRALLSSLRL---VLSGGAPLPPELARRFRELF------GGALVNGYGLTETTGVVT-  319

Query  427  LALNSAAGLVDQWQPNQDSKPLAVRPGSAGLPMPGFDVRVVDDE-GREVPRGTMGNIVMA  485
                             D        GS G P+PG +V++VDDE G  VP G  G + + 
Sbjct  320  ------------TPLPLDED--LRSLGSVGRPLPGTEVKIVDDETGEPVPPGEPGELCVR  365

Query  486  MPLAPTAFTSLFKDDERFYRGYVKRFNGRWVDTGDAGMIDEDGYIHIMSRSDDIINVA  543
                P        D E     +       W  TGD G  DEDGY+ I+ R  D I + 
Sbjct  366  ---GPGVMKGYLNDPELTAEAFD---EDGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-terminal domain. 
 This is a small domain that is found C terminal to pfam00501. 
It has a central beta sheet core that is flanked by alpha 
helices.
Length=76

 Score = 73.3 bits (181),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 8/83 (10%)

Query  552  IEQAILSHPDIGEASVVGMPDPLKGHLPFAFIQPRGSGPLPARPSAELFHAVNQLVREQI  611
            +E A++SHP + EA+VVG+PD LKG  P AF+  +            L   +   VRE++
Sbjct  2    VESALVSHPAVAEAAVVGVPDELKGEAPVAFVVLK-------PGVELLEEELVAHVREEL  54

Query  612  GAIASLGGIIQGRGMIPKTRSGK  634
            G  A    ++     +PKTRSGK
Sbjct  55   GPYAVPKEVVF-VDELPKTRSGK  76


>CDD:465043 pfam16177, ACAS_N, Acetyl-coenzyme A synthetase N-terminus.  
This domain is found at the N-terminus of many acetyl-coenzyme 
A synthetase enzymes.
Length=55

 Score = 67.1 bits (165),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (44%), Gaps = 8/62 (13%)

Query  5   QTVHAQSLHSPESFWSYHATKLHWHKKPSQTLVRRPKTLPSGVTHEHWSWFPDGEISTTY  64
           + ++ +S+  PE FW   A +L W K   + L         G       WF  G+++  Y
Sbjct  2   EALYRRSIEDPEGFWGEVAKELDWFKPFDKVL--------DGSNGPFAKWFVGGKLNVCY  53

Query  65  NC  66
           NC
Sbjct  54  NC  55



Lambda      K        H        a         alpha
   0.319    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 873075680


Query= TCONS_00011446

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 131     4e-35
CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-termina...  72.2    1e-16


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 131 bits (332),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 65/252 (26%), Positives = 96/252 (38%), Gaps = 38/252 (15%)

Query  1    MFCASDIGWVVGHSYILYAPLLVGATTVLFEGKPVGTPDAGTFWRIVEEHKVKVLSTAPT  60
            +     +    G S  L  PLL GAT VL  G P    D      ++E +KV VL   PT
Sbjct  203  VLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFP--ALDPAALLELIERYKVTVLYGVPT  260

Query  61   AIRAIRKDDPDNKYFLQVARRGGLRHLKALFLAGERSEPSIVQMFQELLTQHAAPGAMVI  120
             +  + +         + A    LR +      G    P + + F+EL       G  ++
Sbjct  261  LLNMLLEAGA-----PKRALLSSLRLV---LSGGAPLPPELARRFRELF------GGALV  306

Query  121  DNWWSSESGSPISGLALNSAAGLVDQWQPNQDSKPLAVRPGSAGLPMPGFDVRVVDDE-G  179
            + +  +E+   ++                  D        GS G P+PG +V++VDDE G
Sbjct  307  NGYGLTETTGVVT-------------TPLPLDED--LRSLGSVGRPLPGTEVKIVDDETG  351

Query  180  REVPRGTMGNIVMAMPLAPTAFTSLFKDDERFYRGYVKRFNGRWVDTGDAGMIDEDGYIH  239
              VP G  G + +     P        D E     +       W  TGD G  DEDGY+ 
Sbjct  352  EPVPPGEPGELCVR---GPGVMKGYLNDPELTAEAFD---EDGWYRTGDLGRRDEDGYLE  405

Query  240  IMSRSDDIINVA  251
            I+ R  D I + 
Sbjct  406  IVGRKKDQIKLG  417


>CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-terminal domain. 
 This is a small domain that is found C terminal to pfam00501. 
It has a central beta sheet core that is flanked by alpha 
helices.
Length=76

 Score = 72.2 bits (178),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 8/83 (10%)

Query  260  IEQAILSHPDIGEASVVGMPDPLKGHLPFAFIQPRGSGPLPARPSAELFHAVNQLVREQI  319
            +E A++SHP + EA+VVG+PD LKG  P AF+  +            L   +   VRE++
Sbjct  2    VESALVSHPAVAEAAVVGVPDELKGEAPVAFVVLK-------PGVELLEEELVAHVREEL  54

Query  320  GAIASLGGIIQGRGMIPKTRSGK  342
            G  A    ++     +PKTRSGK
Sbjct  55   GPYAVPKEVVF-VDELPKTRSGK  76



Lambda      K        H        a         alpha
   0.320    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 472215968


Query= TCONS_00011447

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00011448

Length=123
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase           75.6    1e-17


>CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase.  
Length=399

 Score = 75.6 bits (186),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 38/45 (84%), Gaps = 0/45 (0%)

Query  68   LEEQDPTVYNILQKEKKRQKHFINLIPSENFTSQAVLDALGSVMQ  112
            LE+ DP V++I++KEK+RQ+  I LI SENFTS+AV++ALGSV+ 
Sbjct  1    LEDSDPEVFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLT  45



Lambda      K        H        a         alpha
   0.312    0.122    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00017717

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase           720     0.0  


>CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase.  
Length=399

 Score = 720 bits (1860),  Expect = 0.0, Method: Composition-based stats.
 Identities = 268/405 (66%), Positives = 322/405 (80%), Gaps = 6/405 (1%)

Query  68   LEEQDPTVYNILQKEKKRQKHFINLIPSENFTSQAVLDALGSVMQNKYSEGYPGARYYGG  127
            LE+ DP V++I++KEK+RQ+  I LI SENFTS+AV++ALGSV+ NKYSEGYPG RYYGG
Sbjct  1    LEDSDPEVFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYSEGYPGKRYYGG  60

Query  128  NEFIDESERLCQQRALETFRLDPEEWGVNVQALSGSPANLYAISAVLNTHDRLMGLDLPH  187
             E +DE E LCQ RALE F LDP +WGVNVQ LSGSPANL   +A+L   DR+MGLDLPH
Sbjct  61   CEHVDEIETLCQDRALEAFGLDPAKWGVNVQPLSGSPANLAVYTALLEPGDRIMGLDLPH  120

Query  188  GGHLSHGYQTPTKKISFISKYFETLPYRLDESTGLIDYDGAEKLALLYRPKLIIAGTSAY  247
            GGHL+HGY   +KKIS  SK+FE++PY +D  TG IDYD  EK A L+RPKLI+AGTSAY
Sbjct  121  GGHLTHGYPVNSKKISASSKFFESMPYGVDPETGYIDYDQLEKNAKLFRPKLIVAGTSAY  180

Query  248  SRLIDYPRMRQIADAAGAYLLSDMAHISGLVAAGVLPSPFPHSDIVTTTTHKSLRGPRGA  307
            SRLIDY R R+IAD  GAYL+ DMAHISGLVAAGV+PSPFP++D+VTTTTHK+LRGPRG 
Sbjct  181  SRLIDYARFREIADEVGAYLMVDMAHISGLVAAGVIPSPFPYADVVTTTTHKTLRGPRGG  240

Query  308  MIFYRKGVRRTDKKGNKEMYDLENLINASVFPGHQGGPHNHTITALSVALKQAQTPEFKA  367
            MIFYRKGV+  DK G + +Y+LE  IN++VFPG QGGPHNH I A +VALKQA TPEFK 
Sbjct  241  MIFYRKGVKSVDKTGKEILYELEKKINSAVFPGLQGGPHNHVIAAKAVALKQALTPEFKE  300

Query  368  YQETVLANAKALSERLGGPINNGGLGYNIVSGGTDNHLVLVDLKNRGVDGARVERVLELC  427
            YQ+ V+ NAKAL+E L         GY +VSGGTDNHLVLVDL+ +G+DGAR E+VLE  
Sbjct  301  YQQQVVKNAKALAEAL------TERGYKLVSGGTDNHLVLVDLRPKGLDGARAEKVLEAA  354

Query  428  GVASNKNTVPGDQSALKPGGLRLGTPAMTTRGFQPEDFRRVADIV  472
             + +NKNT+PGD+SA  P GLRLGTPA+T+RGF   DF +VA  +
Sbjct  355  NITANKNTIPGDKSAFVPSGLRLGTPALTSRGFGEADFEKVAGFI  399



Lambda      K        H        a         alpha
   0.316    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00011449

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase           244     5e-81


>CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase.  
Length=399

 Score = 244 bits (625),  Expect = 5e-81, Method: Composition-based stats.
 Identities = 88/130 (68%), Positives = 105/130 (81%), Gaps = 0/130 (0%)

Query  68   LEEQDPTVYNILQKEKKRQKHFINLIPSENFTSQAVLDALGSVMQNKYSEGYPGARYYGG  127
            LE+ DP V++I++KEK+RQ+  I LI SENFTS+AV++ALGSV+ NKYSEGYPG RYYGG
Sbjct  1    LEDSDPEVFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYSEGYPGKRYYGG  60

Query  128  NEFIDESERLCQQRALETFRLDPEEWGVNVQGLSGSPANLYAISAVLNTHDRLMGLDLPH  187
             E +DE E LCQ RALE F LDP +WGVNVQ LSGSPANL   +A+L   DR+MGLDLPH
Sbjct  61   CEHVDEIETLCQDRALEAFGLDPAKWGVNVQPLSGSPANLAVYTALLEPGDRIMGLDLPH  120

Query  188  GGHLSHGYQT  197
            GGHL+HGY  
Sbjct  121  GGHLTHGYPV  130



Lambda      K        H        a         alpha
   0.315    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00011450

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase           647     0.0  


>CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase.  
Length=399

 Score = 647 bits (1671),  Expect = 0.0, Method: Composition-based stats.
 Identities = 241/362 (67%), Positives = 285/362 (79%), Gaps = 6/362 (2%)

Query  1    MQNKYSEGYPGARYYGGNEFIDESERLCQQRALETFRLDPEEWGVNVQALSGSPANLYAI  60
            + NKYSEGYPG RYYGG E +DE E LCQ RALE F LDP +WGVNVQ LSGSPANL   
Sbjct  44   LTNKYSEGYPGKRYYGGCEHVDEIETLCQDRALEAFGLDPAKWGVNVQPLSGSPANLAVY  103

Query  61   SAVLNTHDRLMGLDLPHGGHLSHGYQTPTKKISFISKYFETLPYRLDESTGLIDYDGAEK  120
            +A+L   DR+MGLDLPHGGHL+HGY   +KKIS  SK+FE++PY +D  TG IDYD  EK
Sbjct  104  TALLEPGDRIMGLDLPHGGHLTHGYPVNSKKISASSKFFESMPYGVDPETGYIDYDQLEK  163

Query  121  LALLYRPKLIIAGTSAYSRLIDYPRMRQIADAAGAYLLSDMAHISGLVAAGVLPSPFPHS  180
             A L+RPKLI+AGTSAYSRLIDY R R+IAD  GAYL+ DMAHISGLVAAGV+PSPFP++
Sbjct  164  NAKLFRPKLIVAGTSAYSRLIDYARFREIADEVGAYLMVDMAHISGLVAAGVIPSPFPYA  223

Query  181  DIVTTTTHKSLRGPRGAMIFYRKGVRRTDKKGNKEMYDLENLINASVFPGHQGGPHNHTI  240
            D+VTTTTHK+LRGPRG MIFYRKGV+  DK G + +Y+LE  IN++VFPG QGGPHNH I
Sbjct  224  DVVTTTTHKTLRGPRGGMIFYRKGVKSVDKTGKEILYELEKKINSAVFPGLQGGPHNHVI  283

Query  241  TALSVALKQAQTPEFKAYQETVLANAKALSERLGGPINNGGLGYNIVSGGTDNHLVLVDL  300
             A +VALKQA TPEFK YQ+ V+ NAKAL+E L         GY +VSGGTDNHLVLVDL
Sbjct  284  AAKAVALKQALTPEFKEYQQQVVKNAKALAEAL------TERGYKLVSGGTDNHLVLVDL  337

Query  301  KNRGVDGARVERVLELCGVASNKNTVPGDQSALKPGGLRLGTPAMTTRGFQPEDFRRVAD  360
            + +G+DGAR E+VLE   + +NKNT+PGD+SA  P GLRLGTPA+T+RGF   DF +VA 
Sbjct  338  RPKGLDGARAEKVLEAANITANKNTIPGDKSAFVPSGLRLGTPALTSRGFGEADFEKVAG  397

Query  361  IV  362
             +
Sbjct  398  FI  399



Lambda      K        H        a         alpha
   0.316    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00017718

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase           240     2e-79


>CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase.  
Length=399

 Score = 240 bits (614),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 87/129 (67%), Positives = 105/129 (81%), Gaps = 0/129 (0%)

Query  68   LEEQDPTVYNILQKEKKRQKHFINLIPSENFTSQAVLDALGSVMQSKYSEGYPGARYYGG  127
            LE+ DP V++I++KEK+RQ+  I LI SENFTS+AV++ALGSV+ +KYSEGYPG RYYGG
Sbjct  1    LEDSDPEVFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYSEGYPGKRYYGG  60

Query  128  NEFIDESERLCQQRALETFRLDPEEWGVNVQALSGSPANLYAISAVLNTHDRLMGLDLPH  187
             E +DE E LCQ RALE F LDP +WGVNVQ LSGSPANL   +A+L   DR+MGLDLPH
Sbjct  61   CEHVDEIETLCQDRALEAFGLDPAKWGVNVQPLSGSPANLAVYTALLEPGDRIMGLDLPH  120

Query  188  GGHLSHGYQ  196
            GGHL+HGY 
Sbjct  121  GGHLTHGYP  129



Lambda      K        H        a         alpha
   0.315    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00017719

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase           274     2e-92


>CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase.  
Length=399

 Score = 274 bits (702),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 98/152 (64%), Positives = 121/152 (80%), Gaps = 0/152 (0%)

Query  68   LEEQDPTVYNILQKEKKRQKHFINLIPSENFTSQAVLDALGSVMQNKYSEGYPGARYYGG  127
            LE+ DP V++I++KEK+RQ+  I LI SENFTS+AV++ALGSV+ NKYSEGYPG RYYGG
Sbjct  1    LEDSDPEVFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYSEGYPGKRYYGG  60

Query  128  NEFIDESERLCQQRALETFRLDPEEWGVNVQGISGSPANLYAISAVLNTHDRLMGLDLPH  187
             E +DE E LCQ RALE F LDP +WGVNVQ +SGSPANL   +A+L   DR+MGLDLPH
Sbjct  61   CEHVDEIETLCQDRALEAFGLDPAKWGVNVQPLSGSPANLAVYTALLEPGDRIMGLDLPH  120

Query  188  GGHLSHGYQTPTKKISFISKYFETLPYRLDES  219
            GGHL+HGY   +KKIS  SK+FE++PY +D  
Sbjct  121  GGHLTHGYPVNSKKISASSKFFESMPYGVDPE  152



Lambda      K        H        a         alpha
   0.315    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00011451

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase           720     0.0  


>CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase.  
Length=399

 Score = 720 bits (1860),  Expect = 0.0, Method: Composition-based stats.
 Identities = 268/405 (66%), Positives = 322/405 (80%), Gaps = 6/405 (1%)

Query  68   LEEQDPTVYNILQKEKKRQKHFINLIPSENFTSQAVLDALGSVMQNKYSEGYPGARYYGG  127
            LE+ DP V++I++KEK+RQ+  I LI SENFTS+AV++ALGSV+ NKYSEGYPG RYYGG
Sbjct  1    LEDSDPEVFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYSEGYPGKRYYGG  60

Query  128  NEFIDESERLCQQRALETFRLDPEEWGVNVQALSGSPANLYAISAVLNTHDRLMGLDLPH  187
             E +DE E LCQ RALE F LDP +WGVNVQ LSGSPANL   +A+L   DR+MGLDLPH
Sbjct  61   CEHVDEIETLCQDRALEAFGLDPAKWGVNVQPLSGSPANLAVYTALLEPGDRIMGLDLPH  120

Query  188  GGHLSHGYQTPTKKISFISKYFETLPYRLDESTGLIDYDGAEKLALLYRPKLIIAGTSAY  247
            GGHL+HGY   +KKIS  SK+FE++PY +D  TG IDYD  EK A L+RPKLI+AGTSAY
Sbjct  121  GGHLTHGYPVNSKKISASSKFFESMPYGVDPETGYIDYDQLEKNAKLFRPKLIVAGTSAY  180

Query  248  SRLIDYPRMRQIADAAGAYLLSDMAHISGLVAAGVLPSPFPHSDIVTTTTHKSLRGPRGA  307
            SRLIDY R R+IAD  GAYL+ DMAHISGLVAAGV+PSPFP++D+VTTTTHK+LRGPRG 
Sbjct  181  SRLIDYARFREIADEVGAYLMVDMAHISGLVAAGVIPSPFPYADVVTTTTHKTLRGPRGG  240

Query  308  MIFYRKGVRRTDKKGNKEMYDLENLINASVFPGHQGGPHNHTITALSVALKQAQTPEFKA  367
            MIFYRKGV+  DK G + +Y+LE  IN++VFPG QGGPHNH I A +VALKQA TPEFK 
Sbjct  241  MIFYRKGVKSVDKTGKEILYELEKKINSAVFPGLQGGPHNHVIAAKAVALKQALTPEFKE  300

Query  368  YQETVLANAKALSERLGGPINNGGLGYNIVSGGTDNHLVLVDLKNRGVDGARVERVLELC  427
            YQ+ V+ NAKAL+E L         GY +VSGGTDNHLVLVDL+ +G+DGAR E+VLE  
Sbjct  301  YQQQVVKNAKALAEAL------TERGYKLVSGGTDNHLVLVDLRPKGLDGARAEKVLEAA  354

Query  428  GVASNKNTVPGDQSALKPGGLRLGTPAMTTRGFQPEDFRRVADIV  472
             + +NKNT+PGD+SA  P GLRLGTPA+T+RGF   DF +VA  +
Sbjct  355  NITANKNTIPGDKSAFVPSGLRLGTPALTSRGFGEADFEKVAGFI  399



Lambda      K        H        a         alpha
   0.316    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00011452

Length=168
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase           173     7e-54


>CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase.  
Length=399

 Score = 173 bits (441),  Expect = 7e-54, Method: Composition-based stats.
 Identities = 62/91 (68%), Positives = 75/91 (82%), Gaps = 0/91 (0%)

Query  68   LEEQDPTVYNILQKEKKRQKHFINLIPSENFTSQAVLDALGSVMQNKYSEGYPGARYYGG  127
            LE+ DP V++I++KEK+RQ+  I LI SENFTS+AV++ALGSV+ NKYSEGYPG RYYGG
Sbjct  1    LEDSDPEVFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYSEGYPGKRYYGG  60

Query  128  NEFIDESERLCQQRALETFRLDPEEWGVNVQ  158
             E +DE E LCQ RALE F LDP +WGVNVQ
Sbjct  61   CEHVDEIETLCQDRALEAFGLDPAKWGVNVQ  91



Lambda      K        H        a         alpha
   0.316    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00011453

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase           687     0.0  


>CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase.  
Length=399

 Score = 687 bits (1774),  Expect = 0.0, Method: Composition-based stats.
 Identities = 257/393 (65%), Positives = 309/393 (79%), Gaps = 6/393 (2%)

Query  35   KRWKKRQKHFINLIPSENFTSQAVLDALGSVMQSQSVEGYPGARYYGGNEFIDESERLCQ  94
            K+ K+RQ+  I LI SENFTS+AV++ALGSV+ ++  EGYPG RYYGG E +DE E LCQ
Sbjct  13   KKEKERQREGIELIASENFTSRAVMEALGSVLTNKYSEGYPGKRYYGGCEHVDEIETLCQ  72

Query  95   QRALETFRLDPEEWGVNVQALSGSPANLYAISAVLNTHDRLMGLDLPHGGHLSHGYQTPT  154
             RALE F LDP +WGVNVQ LSGSPANL   +A+L   DR+MGLDLPHGGHL+HGY   +
Sbjct  73   DRALEAFGLDPAKWGVNVQPLSGSPANLAVYTALLEPGDRIMGLDLPHGGHLTHGYPVNS  132

Query  155  KKISFISKYFETLPYRLDESTGLIDYDGAEKLALLYRPKLIIAGTSAYSRLIDYPRMRQI  214
            KKIS  SK+FE++PY +D  TG IDYD  EK A L+RPKLI+AGTSAYSRLIDY R R+I
Sbjct  133  KKISASSKFFESMPYGVDPETGYIDYDQLEKNAKLFRPKLIVAGTSAYSRLIDYARFREI  192

Query  215  ADAAGAYLLSDMAHISGLVAAGVLPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRRTD  274
            AD  GAYL+ DMAHISGLVAAGV+PSPFP++D+VTTTTHK+LRGPRG MIFYRKGV+  D
Sbjct  193  ADEVGAYLMVDMAHISGLVAAGVIPSPFPYADVVTTTTHKTLRGPRGGMIFYRKGVKSVD  252

Query  275  KKGNKEMYDLENLINASVFPGHQGGPHNHTITALSVALKQAQTPEFKAYQETVLANAKAL  334
            K G + +Y+LE  IN++VFPG QGGPHNH I A +VALKQA TPEFK YQ+ V+ NAKAL
Sbjct  253  KTGKEILYELEKKINSAVFPGLQGGPHNHVIAAKAVALKQALTPEFKEYQQQVVKNAKAL  312

Query  335  SERLGGPINNGGLGYNIVSGGTDNHLVLVDLKNRGVDGARVERVLELCGVASNKNTVPGD  394
            +E L         GY +VSGGTDNHLVLVDL+ +G+DGAR E+VLE   + +NKNT+PGD
Sbjct  313  AEAL------TERGYKLVSGGTDNHLVLVDLRPKGLDGARAEKVLEAANITANKNTIPGD  366

Query  395  QSALKPGGLRLGTPAMTTRGFQPEDFRRVADIV  427
            +SA  P GLRLGTPA+T+RGF   DF +VA  +
Sbjct  367  KSAFVPSGLRLGTPALTSRGFGEADFEKVAGFI  399



Lambda      K        H        a         alpha
   0.317    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00011454

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase           517     0.0  


>CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase.  
Length=399

 Score = 517 bits (1333),  Expect = 0.0, Method: Composition-based stats.
 Identities = 194/292 (66%), Positives = 232/292 (79%), Gaps = 6/292 (2%)

Query  1    MGLDLPHGGHLSHGYQTPTKKISFISKYFETLPYRLDESTGLIDYDGAEKLALLYRPKLI  60
            MGLDLPHGGHL+HGY   +KKIS  SK+FE++PY +D  TG IDYD  EK A L+RPKLI
Sbjct  114  MGLDLPHGGHLTHGYPVNSKKISASSKFFESMPYGVDPETGYIDYDQLEKNAKLFRPKLI  173

Query  61   IAGTSAYSRLIDYPRMRQIADAAGAYLLSDMAHISGLVAAGVLPSPFPHSDIVTTTTHKS  120
            +AGTSAYSRLIDY R R+IAD  GAYL+ DMAHISGLVAAGV+PSPFP++D+VTTTTHK+
Sbjct  174  VAGTSAYSRLIDYARFREIADEVGAYLMVDMAHISGLVAAGVIPSPFPYADVVTTTTHKT  233

Query  121  LRGPRGAMIFYRKGVRRTDKKGNKEMYDLENLINASVFPGHQGGPHNHTITALSVALKQA  180
            LRGPRG MIFYRKGV+  DK G + +Y+LE  IN++VFPG QGGPHNH I A +VALKQA
Sbjct  234  LRGPRGGMIFYRKGVKSVDKTGKEILYELEKKINSAVFPGLQGGPHNHVIAAKAVALKQA  293

Query  181  QTPEFKAYQETVLANAKALSERLGGPINNGGLGYNIVSGGTDNHLVLVDLKNRGVDGARV  240
             TPEFK YQ+ V+ NAKAL+E L         GY +VSGGTDNHLVLVDL+ +G+DGAR 
Sbjct  294  LTPEFKEYQQQVVKNAKALAEAL------TERGYKLVSGGTDNHLVLVDLRPKGLDGARA  347

Query  241  ERVLELCGVASNKNTVPGDQSALKPGGLRLGTPAMTTRGFQPEDFRRVADIV  292
            E+VLE   + +NKNT+PGD+SA  P GLRLGTPA+T+RGF   DF +VA  +
Sbjct  348  EKVLEAANITANKNTIPGDKSAFVPSGLRLGTPALTSRGFGEADFEKVAGFI  399



Lambda      K        H        a         alpha
   0.317    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00011455

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460936 pfam03473, MOSC, MOSC domain. The MOSC (MOCO sulfurase...  86.1    5e-21
CDD:281474 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain....  79.7    7e-19


>CDD:460936 pfam03473, MOSC, MOSC domain.  The MOSC (MOCO sulfurase C-terminal) 
domain is a superfamily of beta-strand-rich domains identified 
in the molybdenum cofactor sulfurase and several other 
proteins from both prokaryotes and eukaryotes. These MOSC 
domains contain an absolutely conserved cysteine and occur 
either as stand-alone forms or fused to other domains such 
as NifS-like catalytic domain in Molybdenum cofactor sulfurase. 
The MOSC domain is predicted to be a sulfur-carrier domain 
that receives sulfur abstracted by the pyridoxal phosphate-dependent 
NifS-like enzymes, on its conserved cysteine, and 
delivers it for the formation of diverse sulfur-metal clusters.
Length=116

 Score = 86.1 bits (214),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 27/141 (19%)

Query  243  DESITFADTAPYLLTSETSVDELSARFEGGERMDVTKFRPNIVVSGAATPFEEDFWAELR  302
            D      D    LL S  S D  +A   G   +D  +FR N+VVSG         W E+ 
Sbjct  1    DRKHHGGDDKAVLLYSRESYDAWNAEL-GRGPLDPGRFRENLVVSGG-------TWKEVC  52

Query  303  VRQGGRAARLLLTANCVRCQSINVDYATGKMGKGETGSALKKLMKDRRVDKGAKYSPVFG  362
            +   G   R  +   C+R +              E    L K   +RRVDK  K S  FG
Sbjct  53   I---GD--RFRIGGACLRLEVT---------QPREPCKTLAKRFGERRVDKRFKGSGRFG  98

Query  363  RYVF-LDPGSDKAMIQVGDEV  382
             Y+  L+ G     ++VGDEV
Sbjct  99   WYLRVLEEG----TVRVGDEV  115


>CDD:281474 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain.  This 
domain is found to the N-terminus of pfam03473. The function 
of this domain is unknown, however it is predicted to adopt 
a beta barrel fold.
Length=118

 Score = 79.7 bits (197),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 43/144 (30%), Positives = 59/144 (41%), Gaps = 33/144 (23%)

Query  3    ISQLYTYPIKSLRGVSLSEATLTRTGFQYDRRFMLLKVIPDQNG-AYTLKNMHVPHFPEM  61
            +S LY YPIKS RG SLS A LT  G  +DRRFM++    D +G   T +       P +
Sbjct  4    VSSLYVYPIKSCRGESLSRAELTAAGLAWDRRFMVV----DSDGKFVTARR-----EPRL  54

Query  62   ALFTTDIIYPDEEKGIPGRIIVMYHPPADDRVDDQDKATKTLTIPLQPDIRGLRQLSI-E  120
             L  T +                     D  +         L++PL  +   LR + +  
Sbjct  55   VLIRTTL-------------------DEDGGLTLTAPGMPDLSVPLADNKFDLRGVLVWG  95

Query  121  MHQSPTTGYDMGDPYNAWFSERFG  144
            +  S   G D GD    WFS+  G
Sbjct  96   LSFS---GRDCGDAAADWFSDFLG  116



Lambda      K        H        a         alpha
   0.319    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00011456

Length=625


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784588280


Query= TCONS_00011457

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460936 pfam03473, MOSC, MOSC domain. The MOSC (MOCO sulfurase...  86.1    4e-21
CDD:281474 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain....  78.9    2e-18


>CDD:460936 pfam03473, MOSC, MOSC domain.  The MOSC (MOCO sulfurase C-terminal) 
domain is a superfamily of beta-strand-rich domains identified 
in the molybdenum cofactor sulfurase and several other 
proteins from both prokaryotes and eukaryotes. These MOSC 
domains contain an absolutely conserved cysteine and occur 
either as stand-alone forms or fused to other domains such 
as NifS-like catalytic domain in Molybdenum cofactor sulfurase. 
The MOSC domain is predicted to be a sulfur-carrier domain 
that receives sulfur abstracted by the pyridoxal phosphate-dependent 
NifS-like enzymes, on its conserved cysteine, and 
delivers it for the formation of diverse sulfur-metal clusters.
Length=116

 Score = 86.1 bits (214),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 27/141 (19%)

Query  250  DESITFADTAPYLLTSETSVDELSARFEGGERMDVTKFRPNIVVSGAATPFEEDFWAELR  309
            D      D    LL S  S D  +A   G   +D  +FR N+VVSG         W E+ 
Sbjct  1    DRKHHGGDDKAVLLYSRESYDAWNAEL-GRGPLDPGRFRENLVVSGG-------TWKEVC  52

Query  310  VRQGGRAARLLLTANCVRCQSINVDYATGKMGKGETGSALKKLMKDRRVDKGAKYSPVFG  369
            +   G   R  +   C+R +              E    L K   +RRVDK  K S  FG
Sbjct  53   I---GD--RFRIGGACLRLEVT---------QPREPCKTLAKRFGERRVDKRFKGSGRFG  98

Query  370  RYVF-LDPGSDKAMIQVGDEV  389
             Y+  L+ G     ++VGDEV
Sbjct  99   WYLRVLEEG----TVRVGDEV  115


>CDD:281474 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain.  This 
domain is found to the N-terminus of pfam03473. The function 
of this domain is unknown, however it is predicted to adopt 
a beta barrel fold.
Length=118

 Score = 78.9 bits (195),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 57/143 (40%), Gaps = 33/143 (23%)

Query  11   VQLYTYPIKSLRGVSLSEATLTRTGFQYDRRFMLLKVIPDQNG-AYTLKNMHVPHFPEMA  69
              LY YPIKS RG SLS A LT  G  +DRRFM++    D +G   T +       P + 
Sbjct  5    SSLYVYPIKSCRGESLSRAELTAAGLAWDRRFMVV----DSDGKFVTARR-----EPRLV  55

Query  70   LFTTDIIYPDEEKGIPGRIIVMYHPPADDRVDDQDKATKTLTIPLQPDIRGLRQLSI-EM  128
            L  T +                     D  +         L++PL  +   LR + +  +
Sbjct  56   LIRTTL-------------------DEDGGLTLTAPGMPDLSVPLADNKFDLRGVLVWGL  96

Query  129  HQSPTTGYDMGDPYNAWFSERFG  151
              S   G D GD    WFS+  G
Sbjct  97   SFS---GRDCGDAAADWFSDFLG  116



Lambda      K        H        a         alpha
   0.319    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00011459

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460936 pfam03473, MOSC, MOSC domain. The MOSC (MOCO sulfurase...  86.1    4e-21
CDD:281474 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain....  78.6    2e-18


>CDD:460936 pfam03473, MOSC, MOSC domain.  The MOSC (MOCO sulfurase C-terminal) 
domain is a superfamily of beta-strand-rich domains identified 
in the molybdenum cofactor sulfurase and several other 
proteins from both prokaryotes and eukaryotes. These MOSC 
domains contain an absolutely conserved cysteine and occur 
either as stand-alone forms or fused to other domains such 
as NifS-like catalytic domain in Molybdenum cofactor sulfurase. 
The MOSC domain is predicted to be a sulfur-carrier domain 
that receives sulfur abstracted by the pyridoxal phosphate-dependent 
NifS-like enzymes, on its conserved cysteine, and 
delivers it for the formation of diverse sulfur-metal clusters.
Length=116

 Score = 86.1 bits (214),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 27/141 (19%)

Query  250  DESITFADTAPYLLTSETSVDELSARFEGGERMDVTKFRPNIVVSGAATPFEEDFWAELR  309
            D      D    LL S  S D  +A   G   +D  +FR N+VVSG         W E+ 
Sbjct  1    DRKHHGGDDKAVLLYSRESYDAWNAEL-GRGPLDPGRFRENLVVSGG-------TWKEVC  52

Query  310  VRQGGRAARLLLTANCVRCQSINVDYATGKMGKGETGSALKKLMKDRRVDKGAKYSPVFG  369
            +   G   R  +   C+R +              E    L K   +RRVDK  K S  FG
Sbjct  53   I---GD--RFRIGGACLRLEVT---------QPREPCKTLAKRFGERRVDKRFKGSGRFG  98

Query  370  RYVF-LDPGSDKAMIQVGDEV  389
             Y+  L+ G     ++VGDEV
Sbjct  99   WYLRVLEEG----TVRVGDEV  115


>CDD:281474 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain.  This 
domain is found to the N-terminus of pfam03473. The function 
of this domain is unknown, however it is predicted to adopt 
a beta barrel fold.
Length=118

 Score = 78.6 bits (194),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 57/143 (40%), Gaps = 33/143 (23%)

Query  11   VQLYTYPIKSLRGVSLSEATLTRTGFQYDRRFMLLKVIPDQNG-AYTLKNMHVPHFPEMA  69
              LY YPIKS RG SLS A LT  G  +DRRFM++    D +G   T +       P + 
Sbjct  5    SSLYVYPIKSCRGESLSRAELTAAGLAWDRRFMVV----DSDGKFVTARR-----EPRLV  55

Query  70   LFTTDIIYPDEEKGIPGRIIVMYHPPADDRVDDQDKATKTLTIPLQPDIRGLRQLSI-EM  128
            L  T +                     D  +         L++PL  +   LR + +  +
Sbjct  56   LIRTTL-------------------DEDGGLTLTAPGMPDLSVPLADNKFDLRGVLVWGL  96

Query  129  HQSPTTGYDMGDPYNAWFSERFG  151
              S   G D GD    WFS+  G
Sbjct  97   SFS---GRDCGDAAADWFSDFLG  116



Lambda      K        H        a         alpha
   0.319    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00011458

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460936 pfam03473, MOSC, MOSC domain. The MOSC (MOCO sulfurase...  86.1    4e-21
CDD:281474 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain....  78.6    2e-18


>CDD:460936 pfam03473, MOSC, MOSC domain.  The MOSC (MOCO sulfurase C-terminal) 
domain is a superfamily of beta-strand-rich domains identified 
in the molybdenum cofactor sulfurase and several other 
proteins from both prokaryotes and eukaryotes. These MOSC 
domains contain an absolutely conserved cysteine and occur 
either as stand-alone forms or fused to other domains such 
as NifS-like catalytic domain in Molybdenum cofactor sulfurase. 
The MOSC domain is predicted to be a sulfur-carrier domain 
that receives sulfur abstracted by the pyridoxal phosphate-dependent 
NifS-like enzymes, on its conserved cysteine, and 
delivers it for the formation of diverse sulfur-metal clusters.
Length=116

 Score = 86.1 bits (214),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 27/141 (19%)

Query  250  DESITFADTAPYLLTSETSVDELSARFEGGERMDVTKFRPNIVVSGAATPFEEDFWAELR  309
            D      D    LL S  S D  +A   G   +D  +FR N+VVSG         W E+ 
Sbjct  1    DRKHHGGDDKAVLLYSRESYDAWNAEL-GRGPLDPGRFRENLVVSGG-------TWKEVC  52

Query  310  VRQGGRAARLLLTANCVRCQSINVDYATGKMGKGETGSALKKLMKDRRVDKGAKYSPVFG  369
            +   G   R  +   C+R +              E    L K   +RRVDK  K S  FG
Sbjct  53   I---GD--RFRIGGACLRLEVT---------QPREPCKTLAKRFGERRVDKRFKGSGRFG  98

Query  370  RYVF-LDPGSDKAMIQVGDEV  389
             Y+  L+ G     ++VGDEV
Sbjct  99   WYLRVLEEG----TVRVGDEV  115


>CDD:281474 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain.  This 
domain is found to the N-terminus of pfam03473. The function 
of this domain is unknown, however it is predicted to adopt 
a beta barrel fold.
Length=118

 Score = 78.6 bits (194),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 57/143 (40%), Gaps = 33/143 (23%)

Query  11   VQLYTYPIKSLRGVSLSEATLTRTGFQYDRRFMLLKVIPDQNG-AYTLKNMHVPHFPEMA  69
              LY YPIKS RG SLS A LT  G  +DRRFM++    D +G   T +       P + 
Sbjct  5    SSLYVYPIKSCRGESLSRAELTAAGLAWDRRFMVV----DSDGKFVTARR-----EPRLV  55

Query  70   LFTTDIIYPDEEKGIPGRIIVMYHPPADDRVDDQDKATKTLTIPLQPDIRGLRQLSI-EM  128
            L  T +                     D  +         L++PL  +   LR + +  +
Sbjct  56   LIRTTL-------------------DEDGGLTLTAPGMPDLSVPLADNKFDLRGVLVWGL  96

Query  129  HQSPTTGYDMGDPYNAWFSERFG  151
              S   G D GD    WFS+  G
Sbjct  97   SFS---GRDCGDAAADWFSDFLG  116



Lambda      K        H        a         alpha
   0.319    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00017721

Length=736
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA. ...  317     1e-103


>CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA.  NIPA (nonimprinted 
in Prader-Willi/Angelman syndrome) is a family 
of integral membrane proteins which function as magnesium transporters.
Length=295

 Score = 317 bits (814),  Expect = 1e-103, Method: Composition-based stats.
 Identities = 129/284 (45%), Positives = 194/284 (68%), Gaps = 2/284 (1%)

Query  35   GIALAVSSGVFIGTSFVLKKTGLLKANVKYNEEAGEG-YGYLKNVWWWSGMILMIVGEIC  93
            G+ LA+SS +FIG+SF++KK GLL+   K +  AG G YGYLK   WW+G++ M VGE  
Sbjct  6    GVGLAISSSIFIGSSFIIKKKGLLRLARKGHPRAGAGGYGYLKEWLWWAGLLTMGVGEAA  65

Query  94   NFVAYAFVDAILVTPLGALSVVITTILSAIFLKERLSFVGKVGCFSCIIGSVVIALNAPE  153
            NF AYAF  A LVTPLGALSV+I+ +L++ FLKE+L+  GK+GC  CI+GS VI ++AP+
Sbjct  66   NFAAYAFAPATLVTPLGALSVIISAVLASFFLKEKLNLSGKLGCVLCILGSTVIVIHAPK  125

Query  154  QSSVGDIQDMKHYVIAPGFLAYAGVIIVGCAIVALWLGPRYGKKSMFVYISICSLIGGLS  213
            +  +  ++++ H +  PGFL Y  +++     + L+  PR+G+ ++ VYI+ICSLIG L+
Sbjct  126  EQEIESLREVWHLLTDPGFLVYVILVVGVVLALILYFEPRHGQTNIVVYITICSLIGSLT  185

Query  214  VAATQGLGAAILAQINGKSQFKEWFLYVLLVFVIATLLTEIIYLNKALNLFNAALVTPTY  273
            V + + +G AI     GK+Q      ++LL+ +I   +T+I YLNKAL++FN ++VTP Y
Sbjct  186  VMSVKAVGIAIKLTFTGKNQLTYPIAWILLLVMITCCVTQINYLNKALDIFNTSIVTPVY  245

Query  274  YVFFTSSTIVSSAVLFRGFKG-TGMQIATVILGFLQICAGVVLL  316
            YV FT+S I++SA+LF+ + G   + +A  + GF  +  GV LL
Sbjct  246  YVMFTTSVIIASAILFKEWLGMAFLDVAGELCGFFTVITGVFLL  289



Lambda      K        H        a         alpha
   0.317    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 934207584


Query= TCONS_00011460

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460565 pfam02464, CinA, Competence-damaged protein. CinA is t...  110     9e-33


>CDD:460565 pfam02464, CinA, Competence-damaged protein.  CinA is the first 
gene in the competence-inducible (cin) operon, and is thought 
to be specifically required at some stage in the process 
of transformation. This Pfam family consists of putative competence-damaged 
proteins from the cin operon. Some members 
of this family have nicotinamide mononucleotide (NMN) deamidase 
activity.
Length=155

 Score = 110 bits (278),  Expect = 9e-33, Method: Composition-based stats.
 Identities = 36/104 (35%), Positives = 59/104 (57%), Gaps = 0/104 (0%)

Query  12   PLIKEVVDLLKSRGETISVAETAAGGIISACLLSRAGASSIYKGGVTLYTLESRIAFAGW  71
             L +EV  LLK+RG T++ AE+  GG+++A L S  GAS ++ GGV  Y+ E++    G 
Sbjct  3    SLAEEVGKLLKARGLTLATAESCTGGLLAAALTSVPGASDVFLGGVVTYSNEAKRELLGV  62

Query  72   TQSHIDSYQGPTPDIVAGLAQHVRNTLQPTYTVAESGTAGPTGG  115
                ++ +   + ++   +A+  R  L     VA +G AGP+GG
Sbjct  63   PPETLEEHGAVSEEVAREMAEGARKRLGADIGVAITGIAGPSGG  106



Lambda      K        H        a         alpha
   0.314    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00011461

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00011462

Length=601


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0755    0.140     1.90     42.6     43.6 

Effective search space used: 760663852


Query= TCONS_00011464

Length=741
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA. ...  317     2e-103


>CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA.  NIPA (nonimprinted 
in Prader-Willi/Angelman syndrome) is a family 
of integral membrane proteins which function as magnesium transporters.
Length=295

 Score = 317 bits (814),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 129/284 (45%), Positives = 194/284 (68%), Gaps = 2/284 (1%)

Query  35   GIALAVSSGVFIGTSFVLKKTGLLKANVKYNEEAGEG-YGYLKNVWWWSGMILMIVGEIC  93
            G+ LA+SS +FIG+SF++KK GLL+   K +  AG G YGYLK   WW+G++ M VGE  
Sbjct  6    GVGLAISSSIFIGSSFIIKKKGLLRLARKGHPRAGAGGYGYLKEWLWWAGLLTMGVGEAA  65

Query  94   NFVAYAFVDAILVTPLGALSVVITTILSAIFLKERLSFVGKVGCFSCIIGSVVIALNAPE  153
            NF AYAF  A LVTPLGALSV+I+ +L++ FLKE+L+  GK+GC  CI+GS VI ++AP+
Sbjct  66   NFAAYAFAPATLVTPLGALSVIISAVLASFFLKEKLNLSGKLGCVLCILGSTVIVIHAPK  125

Query  154  QSSVGDIQDMKHYVIAPGFLAYAGVIIVGCAIVALWLGPRYGKKSMFVYISICSLIGGLS  213
            +  +  ++++ H +  PGFL Y  +++     + L+  PR+G+ ++ VYI+ICSLIG L+
Sbjct  126  EQEIESLREVWHLLTDPGFLVYVILVVGVVLALILYFEPRHGQTNIVVYITICSLIGSLT  185

Query  214  VAATQGLGAAILAQINGKSQFKEWFLYVLLVFVIATLLTEIIYLNKALNLFNAALVTPTY  273
            V + + +G AI     GK+Q      ++LL+ +I   +T+I YLNKAL++FN ++VTP Y
Sbjct  186  VMSVKAVGIAIKLTFTGKNQLTYPIAWILLLVMITCCVTQINYLNKALDIFNTSIVTPVY  245

Query  274  YVFFTSSTIVSSAVLFRGFKG-TGMQIATVILGFLQICAGVVLL  316
            YV FT+S I++SA+LF+ + G   + +A  + GF  +  GV LL
Sbjct  246  YVMFTTSVIIASAILFKEWLGMAFLDVAGELCGFFTVITGVFLL  289



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 941483344


Query= TCONS_00011463

Length=741
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA. ...  317     2e-103


>CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA.  NIPA (nonimprinted 
in Prader-Willi/Angelman syndrome) is a family 
of integral membrane proteins which function as magnesium transporters.
Length=295

 Score = 317 bits (814),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 129/284 (45%), Positives = 194/284 (68%), Gaps = 2/284 (1%)

Query  35   GIALAVSSGVFIGTSFVLKKTGLLKANVKYNEEAGEG-YGYLKNVWWWSGMILMIVGEIC  93
            G+ LA+SS +FIG+SF++KK GLL+   K +  AG G YGYLK   WW+G++ M VGE  
Sbjct  6    GVGLAISSSIFIGSSFIIKKKGLLRLARKGHPRAGAGGYGYLKEWLWWAGLLTMGVGEAA  65

Query  94   NFVAYAFVDAILVTPLGALSVVITTILSAIFLKERLSFVGKVGCFSCIIGSVVIALNAPE  153
            NF AYAF  A LVTPLGALSV+I+ +L++ FLKE+L+  GK+GC  CI+GS VI ++AP+
Sbjct  66   NFAAYAFAPATLVTPLGALSVIISAVLASFFLKEKLNLSGKLGCVLCILGSTVIVIHAPK  125

Query  154  QSSVGDIQDMKHYVIAPGFLAYAGVIIVGCAIVALWLGPRYGKKSMFVYISICSLIGGLS  213
            +  +  ++++ H +  PGFL Y  +++     + L+  PR+G+ ++ VYI+ICSLIG L+
Sbjct  126  EQEIESLREVWHLLTDPGFLVYVILVVGVVLALILYFEPRHGQTNIVVYITICSLIGSLT  185

Query  214  VAATQGLGAAILAQINGKSQFKEWFLYVLLVFVIATLLTEIIYLNKALNLFNAALVTPTY  273
            V + + +G AI     GK+Q      ++LL+ +I   +T+I YLNKAL++FN ++VTP Y
Sbjct  186  VMSVKAVGIAIKLTFTGKNQLTYPIAWILLLVMITCCVTQINYLNKALDIFNTSIVTPVY  245

Query  274  YVFFTSSTIVSSAVLFRGFKG-TGMQIATVILGFLQICAGVVLL  316
            YV FT+S I++SA+LF+ + G   + +A  + GF  +  GV LL
Sbjct  246  YVMFTTSVIIASAILFKEWLGMAFLDVAGELCGFFTVITGVFLL  289



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 941483344


Query= TCONS_00011467

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA. ...  222     2e-72


>CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA.  NIPA (nonimprinted 
in Prader-Willi/Angelman syndrome) is a family 
of integral membrane proteins which function as magnesium transporters.
Length=295

 Score = 222 bits (567),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 102/225 (45%), Positives = 153/225 (68%), Gaps = 1/225 (0%)

Query  35   GIALAVSSGVFIGTSFVLKKTGLLKANVKYNEEAGEG-YGYLKNVWWWSGMILMIVGEIC  93
            G+ LA+SS +FIG+SF++KK GLL+   K +  AG G YGYLK   WW+G++ M VGE  
Sbjct  6    GVGLAISSSIFIGSSFIIKKKGLLRLARKGHPRAGAGGYGYLKEWLWWAGLLTMGVGEAA  65

Query  94   NFVAYAFVDAILVTPLGALSVVITTILSAIFLKERLSFVGKVGCFSCIIGSVVIALNAPE  153
            NF AYAF  A LVTPLGALSV+I+ +L++ FLKE+L+  GK+GC  CI+GS VI ++AP+
Sbjct  66   NFAAYAFAPATLVTPLGALSVIISAVLASFFLKEKLNLSGKLGCVLCILGSTVIVIHAPK  125

Query  154  QSSVGDIQDMKHYVIAPGFLAYAGVIIVGCAIVALWLGPRYGKKSMFVYISICSLIGGLS  213
            +  +  ++++ H +  PGFL Y  +++     + L+  PR+G+ ++ VYI+ICSLIG L+
Sbjct  126  EQEIESLREVWHLLTDPGFLVYVILVVGVVLALILYFEPRHGQTNIVVYITICSLIGSLT  185

Query  214  VAATQGLGAAILAQINGKSQFKEWFLYVLLVFVIATLLTEIIYLN  258
            V + + +G AI     GK+Q      ++LL+ +I   +T+I YLN
Sbjct  186  VMSVKAVGIAIKLTFTGKNQLTYPIAWILLLVMITCCVTQINYLN  230



Lambda      K        H        a         alpha
   0.324    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00011466

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA. ...  222     2e-72


>CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA.  NIPA (nonimprinted 
in Prader-Willi/Angelman syndrome) is a family 
of integral membrane proteins which function as magnesium transporters.
Length=295

 Score = 222 bits (567),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 102/225 (45%), Positives = 153/225 (68%), Gaps = 1/225 (0%)

Query  35   GIALAVSSGVFIGTSFVLKKTGLLKANVKYNEEAGEG-YGYLKNVWWWSGMILMIVGEIC  93
            G+ LA+SS +FIG+SF++KK GLL+   K +  AG G YGYLK   WW+G++ M VGE  
Sbjct  6    GVGLAISSSIFIGSSFIIKKKGLLRLARKGHPRAGAGGYGYLKEWLWWAGLLTMGVGEAA  65

Query  94   NFVAYAFVDAILVTPLGALSVVITTILSAIFLKERLSFVGKVGCFSCIIGSVVIALNAPE  153
            NF AYAF  A LVTPLGALSV+I+ +L++ FLKE+L+  GK+GC  CI+GS VI ++AP+
Sbjct  66   NFAAYAFAPATLVTPLGALSVIISAVLASFFLKEKLNLSGKLGCVLCILGSTVIVIHAPK  125

Query  154  QSSVGDIQDMKHYVIAPGFLAYAGVIIVGCAIVALWLGPRYGKKSMFVYISICSLIGGLS  213
            +  +  ++++ H +  PGFL Y  +++     + L+  PR+G+ ++ VYI+ICSLIG L+
Sbjct  126  EQEIESLREVWHLLTDPGFLVYVILVVGVVLALILYFEPRHGQTNIVVYITICSLIGSLT  185

Query  214  VAATQGLGAAILAQINGKSQFKEWFLYVLLVFVIATLLTEIIYLN  258
            V + + +G AI     GK+Q      ++LL+ +I   +T+I YLN
Sbjct  186  VMSVKAVGIAIKLTFTGKNQLTYPIAWILLLVMITCCVTQINYLN  230



Lambda      K        H        a         alpha
   0.324    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00017723

Length=153
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460565 pfam02464, CinA, Competence-damaged protein. CinA is t...  96.1    1e-26


>CDD:460565 pfam02464, CinA, Competence-damaged protein.  CinA is the first 
gene in the competence-inducible (cin) operon, and is thought 
to be specifically required at some stage in the process 
of transformation. This Pfam family consists of putative competence-damaged 
proteins from the cin operon. Some members 
of this family have nicotinamide mononucleotide (NMN) deamidase 
activity.
Length=155

 Score = 96.1 bits (240),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 34/118 (29%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query  30   FFLGPLTNQLYTLESRIAFAGWTQSHIDSYQGPTPDIVAGLAQHVRNTLQPTYTVAESGT  89
             FLG +    Y+ E++    G     ++ +   + ++   +A+  R  L     VA +G 
Sbjct  43   VFLGGVV--TYSNEAKRELLGVPPETLEEHGAVSEEVAREMAEGARKRLGADIGVAITGI  100

Query  90   AGPTGGATRNRTPGYVALAVSTPQGTFTREVETGCGTDRERNMVVFAEEALKLVRDVM  147
            AGP+GG T  +  G V +A++ P GT TR +    G DRE         AL+L+R ++
Sbjct  101  AGPSGG-TEGKPVGTVYIAIAGPGGTVTRRLNF--GGDREAIREQAVVAALELLRRLL  155



Lambda      K        H        a         alpha
   0.319    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00011468

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00011469

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA. ...  222     2e-72


>CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA.  NIPA (nonimprinted 
in Prader-Willi/Angelman syndrome) is a family 
of integral membrane proteins which function as magnesium transporters.
Length=295

 Score = 222 bits (567),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 102/225 (45%), Positives = 153/225 (68%), Gaps = 1/225 (0%)

Query  35   GIALAVSSGVFIGTSFVLKKTGLLKANVKYNEEAGEG-YGYLKNVWWWSGMILMIVGEIC  93
            G+ LA+SS +FIG+SF++KK GLL+   K +  AG G YGYLK   WW+G++ M VGE  
Sbjct  6    GVGLAISSSIFIGSSFIIKKKGLLRLARKGHPRAGAGGYGYLKEWLWWAGLLTMGVGEAA  65

Query  94   NFVAYAFVDAILVTPLGALSVVITTILSAIFLKERLSFVGKVGCFSCIIGSVVIALNAPE  153
            NF AYAF  A LVTPLGALSV+I+ +L++ FLKE+L+  GK+GC  CI+GS VI ++AP+
Sbjct  66   NFAAYAFAPATLVTPLGALSVIISAVLASFFLKEKLNLSGKLGCVLCILGSTVIVIHAPK  125

Query  154  QSSVGDIQDMKHYVIAPGFLAYAGVIIVGCAIVALWLGPRYGKKSMFVYISICSLIGGLS  213
            +  +  ++++ H +  PGFL Y  +++     + L+  PR+G+ ++ VYI+ICSLIG L+
Sbjct  126  EQEIESLREVWHLLTDPGFLVYVILVVGVVLALILYFEPRHGQTNIVVYITICSLIGSLT  185

Query  214  VAATQGLGAAILAQINGKSQFKEWFLYVLLVFVIATLLTEIIYLN  258
            V + + +G AI     GK+Q      ++LL+ +I   +T+I YLN
Sbjct  186  VMSVKAVGIAIKLTFTGKNQLTYPIAWILLLVMITCCVTQINYLN  230



Lambda      K        H        a         alpha
   0.324    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00011470

Length=741
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA. ...  317     2e-103


>CDD:398984 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA.  NIPA (nonimprinted 
in Prader-Willi/Angelman syndrome) is a family 
of integral membrane proteins which function as magnesium transporters.
Length=295

 Score = 317 bits (814),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 129/284 (45%), Positives = 194/284 (68%), Gaps = 2/284 (1%)

Query  35   GIALAVSSGVFIGTSFVLKKTGLLKANVKYNEEAGEG-YGYLKNVWWWSGMILMIVGEIC  93
            G+ LA+SS +FIG+SF++KK GLL+   K +  AG G YGYLK   WW+G++ M VGE  
Sbjct  6    GVGLAISSSIFIGSSFIIKKKGLLRLARKGHPRAGAGGYGYLKEWLWWAGLLTMGVGEAA  65

Query  94   NFVAYAFVDAILVTPLGALSVVITTILSAIFLKERLSFVGKVGCFSCIIGSVVIALNAPE  153
            NF AYAF  A LVTPLGALSV+I+ +L++ FLKE+L+  GK+GC  CI+GS VI ++AP+
Sbjct  66   NFAAYAFAPATLVTPLGALSVIISAVLASFFLKEKLNLSGKLGCVLCILGSTVIVIHAPK  125

Query  154  QSSVGDIQDMKHYVIAPGFLAYAGVIIVGCAIVALWLGPRYGKKSMFVYISICSLIGGLS  213
            +  +  ++++ H +  PGFL Y  +++     + L+  PR+G+ ++ VYI+ICSLIG L+
Sbjct  126  EQEIESLREVWHLLTDPGFLVYVILVVGVVLALILYFEPRHGQTNIVVYITICSLIGSLT  185

Query  214  VAATQGLGAAILAQINGKSQFKEWFLYVLLVFVIATLLTEIIYLNKALNLFNAALVTPTY  273
            V + + +G AI     GK+Q      ++LL+ +I   +T+I YLNKAL++FN ++VTP Y
Sbjct  186  VMSVKAVGIAIKLTFTGKNQLTYPIAWILLLVMITCCVTQINYLNKALDIFNTSIVTPVY  245

Query  274  YVFFTSSTIVSSAVLFRGFKG-TGMQIATVILGFLQICAGVVLL  316
            YV FT+S I++SA+LF+ + G   + +A  + GF  +  GV LL
Sbjct  246  YVMFTTSVIIASAILFKEWLGMAFLDVAGELCGFFTVITGVFLL  289



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 941483344


Query= TCONS_00017726

Length=493


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00017727

Length=481


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599678264


Query= TCONS_00011471

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00011474

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00011472

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00011473

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00011475

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00017729

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00011477

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00017730

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00011478

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00011479

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00017731

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00011480

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00011481

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00011482

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00011484

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00011483

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00011485

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         106     2e-28


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 106 bits (268),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 49/151 (32%), Positives = 77/151 (51%), Gaps = 10/151 (7%)

Query  4    AAMRWCPETPRQLISHRRGEEARQVLKRIFPQA-TDQQIDAKARLIQHSIEEAAVSVSER  62
              + + PE+PR L+   R EEAR+VL ++      D+++D     ++   E    S    
Sbjct  186  IGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAEKASW---  242

Query  63   SLWWQMKQLFTVRENVRALVTACMVMAISQLGGFNTLMYYSATLFSMVGFNKPTAVSMVV  122
                  K+LF+ +   + L+   M+    QL G N + YYS T+F  +G +    V+++V
Sbjct  243  ------KELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTIIV  296

Query  123  GATNFVFGFANFASIDRFGRRVVLLITVLGM  153
            G  NFVF F     +DRFGRR +LL+   GM
Sbjct  297  GVVNFVFTFIAIFLVDRFGRRPLLLLGAAGM  327



Lambda      K        H        a         alpha
   0.326    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00011486

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         227     1e-71
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            69.0    9e-14


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 227 bits (581),  Expect = 1e-71, Method: Composition-based stats.
 Identities = 116/324 (36%), Positives = 172/324 (53%), Gaps = 24/324 (7%)

Query  9    GYDTGVISAVLVSLGTDL---------GKKLSSSEQELITSITSGGALIGAVLAGLTSDK  59
            GYDTGVI A L  +                  S    LI SI S G  IG++ AG   D+
Sbjct  13   GYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLGDR  72

Query  60   YGRKLGIYVGCVLFVVGTVLQTAA---YSIAQMTVGRLVVGFGVGNAAMIIPLYIGEMAP  116
            +GRK  + +  VLFV+G VLQ AA   +S+ Q+ VGR++VG GVG A+++ P+YI E+AP
Sbjct  73   FGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEIAP  132

Query  117  ARFRGRLIVFDNLCVAFGQFVSYALGAAFA--NVAHGWRYMVGIGAIPALMLGAAMRWCP  174
             + RG L     L + FG  ++Y  G      + + GWR  +G+  +PAL+L   + + P
Sbjct  133  KKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLLFLP  192

Query  175  ETPRQLISHRRGEEARQVLKRIFPQA-TDQQIDAKARLIQHSIEEAAVSVSERSLWWQMK  233
            E+PR L+   R EEAR+VL ++      D+++D     ++   E    S          K
Sbjct  193  ESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAEKASW---------K  243

Query  234  QLFTVRENVRALVTACMVMAISQLGGFNTLMYYSATLFSMVGFNKPTAVSMVVGATNFVF  293
            +LF+ +   + L+   M+    QL G N + YYS T+F  +G +    V+++VG  NFVF
Sbjct  244  ELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTIIVGVVNFVF  303

Query  294  GFANFASIDRFGRRVVLLITVLGM  317
             F     +DRFGRR +LL+   GM
Sbjct  304  TFIAIFLVDRFGRRPLLLLGAAGM  327


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 69.0 bits (169),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 85/186 (46%), Gaps = 4/186 (2%)

Query  12   TGVISAVLVSLGTDLGKKLSSSEQELITSITSGGALIGAVLAGLTSDKYGRKLGIYVGCV  71
            + +  A+ + L  DLG  +S +E  L+ ++ S G  +   LAG  SD++GR+  + +G +
Sbjct  13   SLLGPALPLLLAEDLG--ISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLL  70

Query  72   LFVVGTVLQTAAYSIAQMTVGRLVVGFGVGNAAMIIPLYIGEMAPARFRGRLIVFDNLCV  131
            LF +G +L   A S+  + V R++ G G G         I +  P   RGR +   +   
Sbjct  71   LFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGF  130

Query  132  AFGQFVSYALGAAFANVAHGWRYMVGIGAIPALMLGAAMRWCPETPRQLISHRRGEEARQ  191
              G  +   LG   A    GWR    I AI +L L A +   P  P +    +  EEAR 
Sbjct  131  GLGAALGPLLGGLLA-SLFGWRAAFLILAILSL-LAAVLLLLPRPPPESKRPKPAEEARL  188

Query  192  VLKRIF  197
             L   +
Sbjct  189  SLIVAW  194



Lambda      K        H        a         alpha
   0.326    0.138    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00011487

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00011488

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395540 pfam00667, FAD_binding_1, FAD binding domain. This dom...  174     1e-50
CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin                        122     5e-33
CDD:425503 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding d...  102     1e-26


>CDD:395540 pfam00667, FAD_binding_1, FAD binding domain.  This domain is 
found in sulfite reductase, NADPH cytochrome P450 reductase, 
Nitric oxide synthase and methionine synthase reductase.
Length=219

 Score = 174 bits (442),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 82/218 (38%), Positives = 113/218 (52%), Gaps = 12/218 (6%)

Query  295  VDISSSRELF-ASSDRHCLHIELDLSSQPEFTYKTGDHLAVWAGNPDAEVDILVNALGLP  353
              + S+REL   SSDR+C+H+ELD+S     TY+TGDHL V+  N +  V+ L+  LGL 
Sbjct  10   APVLSNRELTSPSSDRNCIHVELDISGS-GLTYQTGDHLGVYPPNNEELVEELLERLGLD  68

Query  354  PSRHEIPISITSLDPATKVRVPTPTTPIALFRYYLEICAPVNRDTLLGLAQFAPTPAAKD  413
            P      + + +LD   K     PTT     +YYL+I  P ++  L  LAQFAP    K 
Sbjct  69   PKPDT-VVLLKTLDERVKPPRLPPTTYRQALKYYLDITGPPSKQLLRLLAQFAPEEEEKQ  127

Query  414  FLLQLGQDKTA--YASFLNHTHLTLGRLLQLACPDTPWTALPLSYLIETLTPIQPRYYSI  471
             L  L  D  A  Y  +  +   TL  +L+      P   LP  +L+  L  +QPRYYSI
Sbjct  128  RLEFLSSDAGAREYKRWKLNHAPTLLEVLEEF----PSVKLPADFLLTQLPQLQPRYYSI  183

Query  472  SSSSVLAPRKPSITVLVSCTPLPADPTQSIH-GLTSNY  508
            SSSS + P +  +TV+V       D    IH G+ SN+
Sbjct  184  SSSSKVHPNEVHLTVVV--VEYETDGEGRIHYGVCSNW  219


>CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin.  
Length=142

 Score = 122 bits (307),  Expect = 5e-33, Method: Composition-based stats.
 Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 7/144 (5%)

Query  95   VFWGSQSGTAEGFAHRLAREVSLRFGQEAMTADLSDYDPDSVSRIPNSKLAIFILSTYGE  154
            +F+GSQ+G  E  A  +A  +    G E    DL D D +++S I    L + ++ST+GE
Sbjct  1    IFYGSQTGNTEKLAEAIAEGLG-EAGFEVDVVDLDDVD-ETLSEIEEEDLLLVVVSTWGE  58

Query  155  GDPSDNTAEFWDWIH---KSQNVSLSNLRYAAFGLGNSNYKFYNRVVDVVVEALDRFGAK  211
            G+P DN   F DW+      ++  LS L+YA FGLG+S Y+ +      + E L   GA 
Sbjct  59   GEPPDNAKPFVDWLLLFGTLEDGDLSGLKYAVFGLGDSGYEGFCGAAKKLDEKLSELGAS  118

Query  212  SLMPVGKANDA--EGTTQEDFMSW  233
             + P+G+ ++   E   +E F +W
Sbjct  119  RVGPLGEGDEDPQEDGLEEAFEAW  142


>CDD:425503 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain. 
 Xanthine dehydrogenases, that also bind FAD/NAD, have essentially 
no similarity.
Length=109

 Score = 102 bits (257),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 39/116 (34%), Positives = 57/116 (49%), Gaps = 10/116 (9%)

Query  562  MVAAGTGLAPFRAFIAERRQLSLIGKEIGEMILFFGCRAPTQDFIYKEELEELQAALGDK  621
            M+A GTG+AP R+ +    +     K+  +++L FG R    D +Y+EEL+EL      +
Sbjct  1    MIAGGTGIAPVRSMLRAILEDP---KDPTQVVLVFGNRNE-DDILYREELDELAEKHPGR  56

Query  622  LRVITAFSREVGSQ---KVYVQDRIAEHAAEVIRLIDEGASVYICGRAGMAREVER  674
            L V+   SR        K  VQD + E       L DE   VY+CG  GM + V +
Sbjct  57   LTVVYVVSRPEAGWTGGKGRVQDALLEDHLS---LPDEETHVYVCGPPGMIKAVRK  109



Lambda      K        H        a         alpha
   0.318    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 862752150


Query= TCONS_00011489

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  191     1e-55


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 191 bits (488),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 112/503 (22%), Positives = 197/503 (39%), Gaps = 60/503 (12%)

Query  34   PKGLRRYPNF--HPFSGMSAIPFMVLASRGFRSMELLNLHRKH-PVLRTGPN---TLSYG  87
            P G    P F      G       V             L +K+ P+ R        +   
Sbjct  1    PPGPPPLPLFGNLLQLGRKGNLHSVFT----------KLQKKYGPIFRLYLGPKPVVVLS  50

Query  88   DVRAIKDIYGHNTKCIKDPSYIVTAGTHYHLAD------VVDKPDHARK-RKVLSSAYAL  140
               A+K++     +                         V       R+ R+ L+  +  
Sbjct  51   GPEAVKEVLIKKGEEFSG--RPDEPWFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTS  108

Query  141  KNLETWEYKVSDKLERLIAHFDRVCTKPPSAAVAEGKAAPDPADLTVDFRAWTNFFTLDA  200
                ++E +V ++   L+    +   +P                  +D         L+ 
Sbjct  109  FGKLSFEPRVEEEARDLVEKLRKTAGEPG----------------VIDITDLLFRAALNV  152

Query  201  IADIGLSEKLGFLDSGSDVCTAERKDGTTYEVHLREALYPTARKQSLILWNYEWYPVLNK  260
            I  I   E+ G L+         +           + L       S  L +   +P+L  
Sbjct  153  ICSILFGERFGSLEDPKF-LELVKAV---------QELSSLLSSPSPQLLDL--FPIL--  198

Query  261  LVNIIPFFRRMQRSSDNWENIVWRRASQRLRRYEAGEKLD-DFFQALMEDK-NGHPNNLE  318
                 P  R+++R+    ++++ +   +R    ++ +K   DF  AL+  K     + L 
Sbjct  199  KYFPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLT  258

Query  319  WGEIVAEVNIMMNAGSVTTAIAIANVMYQLLKNPRCLAKLREEVDAVLDEEDIIAPYDKV  378
              E+ A V  +  AG+ TT+  ++  +Y+L K+P    KLREE+D V+ ++     YD +
Sbjct  259  DEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSP-TYDDL  317

Query  379  KHLPYLRACLDESLRIFPPTSHGLPRQTPPEGMEILGQWVPGNTSVSISALVAHRDESVF  438
            +++PYL A + E+LR+ P     LPR+   +   I G  +P  T V ++    HRD  VF
Sbjct  318  QNMPYLDAVIKETLRLHPVVPLLLPREV-TKDTVIPGYLIPKGTLVIVNLYALHRDPEVF  376

Query  439  PQADQYIPERWLGEEGKALQP-YFVAFSAGARSCIGRNISYLEQTKAIATLVHRYEFALP  497
            P  +++ PER+L E GK  +   F+ F AG R+C+G  ++ +E    +ATL+  +E  LP
Sbjct  377  PNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELP  436

Query  498  HPGWELKRLETMNLILGDMPVKV  520
                     ET  L+L   P K+
Sbjct  437  PGTDPPDIDETPGLLLPPKPYKL  459



Lambda      K        H        a         alpha
   0.322    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00011490

Length=710
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395540 pfam00667, FAD_binding_1, FAD binding domain. This dom...  175     5e-51
CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin                        122     6e-33
CDD:425503 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding d...  103     4e-27


>CDD:395540 pfam00667, FAD_binding_1, FAD binding domain.  This domain is 
found in sulfite reductase, NADPH cytochrome P450 reductase, 
Nitric oxide synthase and methionine synthase reductase.
Length=219

 Score = 175 bits (445),  Expect = 5e-51, Method: Composition-based stats.
 Identities = 82/218 (38%), Positives = 113/218 (52%), Gaps = 12/218 (6%)

Query  295  VDISSSRELF-ASSDRHCLHIELDLSSQPEFTYKTGDHLAVWAGNPDAEVDILVNALGLP  353
              + S+REL   SSDR+C+H+ELD+S     TY+TGDHL V+  N +  V+ L+  LGL 
Sbjct  10   APVLSNRELTSPSSDRNCIHVELDISGS-GLTYQTGDHLGVYPPNNEELVEELLERLGLD  68

Query  354  PSRHEIPISITSLDPATKVRVPTPTTPIALFRYYLEICAPVNRDTLLGLAQFAPTPAAKD  413
            P      + + +LD   K     PTT     +YYL+I  P ++  L  LAQFAP    K 
Sbjct  69   PKPDT-VVLLKTLDERVKPPRLPPTTYRQALKYYLDITGPPSKQLLRLLAQFAPEEEEKQ  127

Query  414  FLLQLGQDKTA--YASFLNHTHLTLGRLLQLACPDTPWTALPLSYLIETLTPIQPRYYSI  471
             L  L  D  A  Y  +  +   TL  +L+      P   LP  +L+  L  +QPRYYSI
Sbjct  128  RLEFLSSDAGAREYKRWKLNHAPTLLEVLEEF----PSVKLPADFLLTQLPQLQPRYYSI  183

Query  472  SSSSVLAPRKPSITVLVSCTPLPADPTQSIH-GLTSNY  508
            SSSS + P +  +TV+V       D    IH G+ SN+
Sbjct  184  SSSSKVHPNEVHLTVVV--VEYETDGEGRIHYGVCSNW  219


>CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin.  
Length=142

 Score = 122 bits (307),  Expect = 6e-33, Method: Composition-based stats.
 Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 7/144 (5%)

Query  95   VFWGSQSGTAEGFAHRLAREVSLRFGQEAMTADLSDYDPDSVSRIPNSKLAIFILSTYGE  154
            +F+GSQ+G  E  A  +A  +    G E    DL D D +++S I    L + ++ST+GE
Sbjct  1    IFYGSQTGNTEKLAEAIAEGLG-EAGFEVDVVDLDDVD-ETLSEIEEEDLLLVVVSTWGE  58

Query  155  GDPSDNTAEFWDWIH---KSQNVSLSNLRYAAFGLGNSNYKFYNRVVDVVVEALDRFGAK  211
            G+P DN   F DW+      ++  LS L+YA FGLG+S Y+ +      + E L   GA 
Sbjct  59   GEPPDNAKPFVDWLLLFGTLEDGDLSGLKYAVFGLGDSGYEGFCGAAKKLDEKLSELGAS  118

Query  212  SLMPVGKANDA--EGTTQEDFMSW  233
             + P+G+ ++   E   +E F +W
Sbjct  119  RVGPLGEGDEDPQEDGLEEAFEAW  142


>CDD:425503 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain. 
 Xanthine dehydrogenases, that also bind FAD/NAD, have essentially 
no similarity.
Length=109

 Score = 103 bits (260),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 10/116 (9%)

Query  562  MVAAGTGLAPFRAFIAERRQLSLIGKEIGEMILFFGCRAPTQDFIYKEELEELQAALGDK  621
            M+A GTG+AP R+ +    +     K+  +++L FG R    D +Y+EEL+EL      +
Sbjct  1    MIAGGTGIAPVRSMLRAILEDP---KDPTQVVLVFGNRNE-DDILYREELDELAEKHPGR  56

Query  622  LRVITAFSREVGSQ---KVYVQDRIAEHAAEVIRLIDEGASVYICGRAGMAREVEK  674
            L V+   SR        K  VQD + E       L DE   VY+CG  GM + V K
Sbjct  57   LTVVYVVSRPEAGWTGGKGRVQDALLEDHLS---LPDEETHVYVCGPPGMIKAVRK  109



Lambda      K        H        a         alpha
   0.318    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 909945430


Query= TCONS_00011491

Length=1633


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2081579708


Query= TCONS_00011492

Length=2674
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463457 pfam12074, Gcn1_N, Domain of unknown function (DUF3554...  431     4e-137


>CDD:463457 pfam12074, Gcn1_N, Domain of unknown function (DUF3554).  This 
domain is found in the N-terminal region of Gcn1 protein, 
which acts as a translation activator that mediates translational 
control by regulating Gcn2 kinase activity.
Length=350

 Score = 431 bits (1110),  Expect = 4e-137, Method: Composition-based stats.
 Identities = 176/356 (49%), Positives = 234/356 (66%), Gaps = 10/356 (3%)

Query  366  EHRAVYAQAVCGILPSESVSKDIVQGFAPVFSRESNEVALEQEIKALCKHLTFLLQSKVK  425
            +HRA++AQ +  + PS SVS  I+QG AP+ ++ESNE AL  E  ALCKHL FLL+S V+
Sbjct  1    DHRALHAQMLSALPPSTSVSTKILQGLAPLAAKESNEAALSAETSALCKHLAFLLRSGVE  60

Query  426  VSDDVINAVVKGIADKRIPFRKLWHLLVGDVFWRIEAPTLATSEVGPFVTKFLDKMRDLF  485
            V  DV++A VKG+ADK+ P R+LW L VGD+ W +E   L++S V  F    L K+ D F
Sbjct  61   VPKDVVDAFVKGLADKKPPVRRLWALRVGDLLWNLEDEQLSSSVV-AFAEAVLPKLEDTF  119

Query  486  KEVTSNPLPSAQNGSLSAAFVYLALY-ERVSTAQGLDKAD---WETTVAQSMLFTPKPSF  541
            KEV +NPLP+AQ+G +S A+V  AL   R+S++     AD     + V QS+   PKPSF
Sbjct  120  KEVVANPLPAAQSGLVSGAYVATALLLGRLSSSGSSKVADLLKKASIVKQSLALEPKPSF  179

Query  542  LLNPKAYTKLTSPAEIQWMVRALVAVSSGSKFEGTEVAAKIAWAHAFIYAVTAPGLRTNL  601
            LLNPK YTKLTS  ++ W++RAL AV+SG K E +  AA+ AWA AFIY + +  +   +
Sbjct  180  LLNPKVYTKLTSEEDLLWLLRALAAVASGLKEESSNEAARTAWAQAFIYLICSSNVSPKV  239

Query  602  REEAAHALMGIYLRRSELMGRVVTEALWTWILALRTAEKESAASSAGPASEKLLHLVAKA  661
            R EA  AL  +Y R  EL+  ++   LW+W+L+L T EK+SAA SA   +E  LHLV +A
Sbjct  240  RREALSALSQLYARNPELVSDIIINGLWSWLLSLETGEKDSAAVSAKTGNEN-LHLVLRA  298

Query  662  ICPSAANIQSDKIRSDLKRQLVQLLVLCRPELIPNVSWIAQCLRTGTDPGDLVREY  717
            IC    ++     +  L++QLV LLVL R ELIP  SWI  CLR G DPGDLVRE+
Sbjct  299  ICLLGGDV----DKEVLEKQLVSLLVLARHELIPRASWIDLCLRAGVDPGDLVREH  350



Lambda      K        H        a         alpha
   0.318    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0736    0.140     1.90     42.6     43.6 

Effective search space used: 3286792110


Query= TCONS_00011493

Length=148
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426176 pfam01280, Ribosomal_L19e, Ribosomal protein L19e          191     3e-64


>CDD:426176 pfam01280, Ribosomal_L19e, Ribosomal protein L19e.  
Length=143

 Score = 191 bits (487),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 84/140 (60%), Positives = 102/140 (73%), Gaps = 0/140 (0%)

Query  3    NLRTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRAR  62
            +LR QKRLAA V+GCGK ++W+DP E+ EI+ A +R+ IRKL+ DGLII KP   +SR R
Sbjct  1    DLRLQKRLAADVLGCGKNRVWIDPEELEEIAEAITREDIRKLIKDGLIIAKPKKGNSRGR  60

Query  63   ARELNAARRIGRHRGLGKRKGTKDARMPSQLLWMRRMRVLRRLLVRYRAAGKIDKHLYHE  122
            ARE   ARR GRHRG GKRKGTK ARMP + LW+RR+R LRRLL   R  GKIDKH Y +
Sbjct  61   ARERKEARRKGRHRGPGKRKGTKGARMPEKELWIRRIRALRRLLRELRDEGKIDKHTYRK  120

Query  123  LYHLSKGNTFKHKRALIEHV  142
            LY  +KG  FK K  L E++
Sbjct  121  LYRKAKGGEFKSKAHLKEYI  140



Lambda      K        H        a         alpha
   0.324    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00017734

Length=72
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426176 pfam01280, Ribosomal_L19e, Ribosomal protein L19e          91.8    2e-26


>CDD:426176 pfam01280, Ribosomal_L19e, Ribosomal protein L19e.  
Length=143

 Score = 91.8 bits (229),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 40/63 (63%), Positives = 46/63 (73%), Gaps = 0/63 (0%)

Query  1   MNEISNANSRQTIRKLVSDGLIIRKPVTMHSRARARELNAARRIGRHRGLGKRKGTKDAR  60
           + EI+ A +R+ IRKL+ DGLII KP   +SR RARE   ARR GRHRG GKRKGTK AR
Sbjct  27  LEEIAEAITREDIRKLIKDGLIIAKPKKGNSRGRARERKEARRKGRHRGPGKRKGTKGAR  86

Query  61  MPR  63
           MP 
Sbjct  87  MPE  89



Lambda      K        H        a         alpha
   0.319    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00011494

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426176 pfam01280, Ribosomal_L19e, Ribosomal protein L19e          182     4e-60


>CDD:426176 pfam01280, Ribosomal_L19e, Ribosomal protein L19e.  
Length=143

 Score = 182 bits (464),  Expect = 4e-60, Method: Composition-based stats.
 Identities = 87/143 (61%), Positives = 105/143 (73%), Gaps = 0/143 (0%)

Query  3    NLRTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRAR  62
            +LR QKRLAA V+GCGK ++W+DP E+ EI+ A +R+ IRKL+ DGLII KP   +SR R
Sbjct  1    DLRLQKRLAADVLGCGKNRVWIDPEELEEIAEAITREDIRKLIKDGLIIAKPKKGNSRGR  60

Query  63   ARELNAARRIGRHRGLGKRKGTKDARMPSQLLWMRRMRVLRRLLVRYRAAGKIDKHLYHE  122
            ARE   ARR GRHRG GKRKGTK ARMP + LW+RR+R LRRLL   R  GKIDKH Y +
Sbjct  61   ARERKEARRKGRHRGPGKRKGTKGARMPEKELWIRRIRALRRLLRELRDEGKIDKHTYRK  120

Query  123  LYHLSKGNTFKHKRALIEHIQKA  145
            LY  +KG  FK K  L E+I+KA
Sbjct  121  LYRKAKGGEFKSKAHLKEYIEKA  143



Lambda      K        H        a         alpha
   0.321    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00011495

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426176 pfam01280, Ribosomal_L19e, Ribosomal protein L19e          176     1e-57


>CDD:426176 pfam01280, Ribosomal_L19e, Ribosomal protein L19e.  
Length=143

 Score = 176 bits (450),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 84/139 (60%), Positives = 101/139 (73%), Gaps = 0/139 (0%)

Query  27   VKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRARAREL  86
             KRLAA V+GCGK ++W+DP E+ EI+ A +R+ IRKL+ DGLII KP   +SR RARE 
Sbjct  5    QKRLAADVLGCGKNRVWIDPEELEEIAEAITREDIRKLIKDGLIIAKPKKGNSRGRARER  64

Query  87   NAARRIGRHRGLGKRKGTKDARMPSQLLWMRRMRVLRRLLVRYRAAGKIDKHLYHELYHL  146
              ARR GRHRG GKRKGTK ARMP + LW+RR+R LRRLL   R  GKIDKH Y +LY  
Sbjct  65   KEARRKGRHRGPGKRKGTKGARMPEKELWIRRIRALRRLLRELRDEGKIDKHTYRKLYRK  124

Query  147  SKGNTFKHKRALIEHIQKA  165
            +KG  FK K  L E+I+KA
Sbjct  125  AKGGEFKSKAHLKEYIEKA  143



Lambda      K        H        a         alpha
   0.320    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00011496

Length=163
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426176 pfam01280, Ribosomal_L19e, Ribosomal protein L19e          135     4e-42


>CDD:426176 pfam01280, Ribosomal_L19e, Ribosomal protein L19e.  
Length=143

 Score = 135 bits (343),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 70/117 (60%), Positives = 83/117 (71%), Gaps = 0/117 (0%)

Query  1    MNEISNANSRQTIRKLVSDGLIIRKPVTMHSRARARELNAARRIGRHRGLGKRKGTKDAR  60
            + EI+ A +R+ IRKL+ DGLII KP   +SR RARE   ARR GRHRG GKRKGTK AR
Sbjct  27   LEEIAEAITREDIRKLIKDGLIIAKPKKGNSRGRARERKEARRKGRHRGPGKRKGTKGAR  86

Query  61   MPSQLLWMRRMRVLRRLLVRYRAAGKIDKHLYHELYHLSKGNTFKHKRALIEHIQKA  117
            MP + LW+RR+R LRRLL   R  GKIDKH Y +LY  +KG  FK K  L E+I+KA
Sbjct  87   MPEKELWIRRIRALRRLLRELRDEGKIDKHTYRKLYRKAKGGEFKSKAHLKEYIEKA  143



Lambda      K        H        a         alpha
   0.321    0.131    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00011498

Length=474


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00011497

Length=551


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685942452


Query= TCONS_00017735

Length=488


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 601084202


Query= TCONS_00011499

Length=580


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 729280864


Query= TCONS_00017736

Length=474


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00011500

Length=474


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00017737

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00011502

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00011504

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00011505

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00011506

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00011508

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  59.2    1e-12


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 59.2 bits (144),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 19/34 (56%), Positives = 21/34 (62%), Gaps = 0/34 (0%)

Query  241  QACDQCRARKAKCDEGRPACSHCKENNLICVYKE  274
             ACD CR RK KCD  +PACS C +N L C Y  
Sbjct  1    TACDNCRKRKVKCDGKKPACSRCIKNGLECTYSR  34



Lambda      K        H        a         alpha
   0.316    0.135    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00011507

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  59.2    1e-12


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 59.2 bits (144),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 19/34 (56%), Positives = 21/34 (62%), Gaps = 0/34 (0%)

Query  241  QACDQCRARKAKCDEGRPACSHCKENNLICVYKE  274
             ACD CR RK KCD  +PACS C +N L C Y  
Sbjct  1    TACDNCRKRKVKCDGKKPACSRCIKNGLECTYSR  34



Lambda      K        H        a         alpha
   0.316    0.135    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00011509

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.147    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00017738

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00011510

Length=443


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00017741

Length=758
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  63.9    1e-13


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 63.9 bits (156),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 19/34 (56%), Positives = 21/34 (62%), Gaps = 0/34 (0%)

Query  241  QACDQCRARKAKCDEGRPACSHCKENNLICVYKE  274
             ACD CR RK KCD  +PACS C +N L C Y  
Sbjct  1    TACDNCRKRKVKCDGKKPACSRCIKNGLECTYSR  34



Lambda      K        H        a         alpha
   0.315    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 966220928


Query= TCONS_00017740

Length=758
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  63.9    1e-13


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 63.9 bits (156),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 19/34 (56%), Positives = 21/34 (62%), Gaps = 0/34 (0%)

Query  241  QACDQCRARKAKCDEGRPACSHCKENNLICVYKE  274
             ACD CR RK KCD  +PACS C +N L C Y  
Sbjct  1    TACDNCRKRKVKCDGKKPACSRCIKNGLECTYSR  34



Lambda      K        H        a         alpha
   0.315    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 966220928


Query= TCONS_00017742

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.147    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00011512

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00017743

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00017744

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0772    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00011513

Length=809


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1040433680


Query= TCONS_00017745

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.147    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00011511

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.147    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00017746

Length=809


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1040433680


Query= TCONS_00017748

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.147    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00017747

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.147    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00017749

Length=725


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 918200912


Query= TCONS_00011514

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.147    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00011515

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.147    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00011516

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.147    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00011517

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.147    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00011518

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.147    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00017750

Length=385


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 459789232


Query= TCONS_00011519

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00011520

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  118     2e-32
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  75.5    3e-16


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 118 bits (298),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 90/197 (46%), Gaps = 9/197 (5%)

Query  117  EVVVLTGGSNGIGRRIAQLLGDRGIKVAILDIHSPQ-----EDQGHLPPTVRFHKCDITS  171
            +V ++TG S+GIGR IA+ L   G KV ++D    +     ++ G L     F + D+T 
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  172  PSAIAAAAADIRATLGEPTVLINNAGVCSGKTILGGTEADTRIQFEVNTLSHYWLAREFL  231
             + + A        LG   +L+NNAG+         ++ D     +VN    + L R  L
Sbjct  61   RAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVL  120

Query  232  PHMVKRDHGMVATVASLAGYTTTPNMVDYSATKAAAISFHEGLAAELVTRFHAPRVRTVL  291
            P M+K   G +  ++S+AG    P    YSA+KAA I F   LA EL        +R   
Sbjct  121  PAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPH----GIRVNA  176

Query  292  LTQGFTQTALIGQLTPE  308
            +  G   T +  +L  +
Sbjct  177  VAPGGVDTDMTKELRED  193


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 75.5 bits (187),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 44/160 (28%), Positives = 66/160 (41%), Gaps = 11/160 (7%)

Query  126  NGIGRRIAQLLGDRGIKVAILDIHSPQEDQGH-----LPPTVRFHKCDITSPSAIAAAAA  180
            +GIG  IA+ L + G +V + D++     +       L        CD+T    + A  A
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELG--AAVLPCDVTDEEQVEALVA  63

Query  181  DIRATLGEPTVLINNAGVC--SGKTILGGTEADTRIQFEVNTLSHYWLAREFLPHMVKRD  238
                  G   +L+NNAG         L  +  D     +VN  S + LA+  LP M +  
Sbjct  64   AAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLMKEG-  122

Query  239  HGMVATVASLAGYTTTPNMVDYSATKAAAISFHEGLAAEL  278
             G +  ++S+      PN   Y A KAA  +    LA EL
Sbjct  123  -GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVEL  161



Lambda      K        H        a         alpha
   0.323    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 446726320


Query= TCONS_00011521

Length=3724


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.121    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 4484425946


Query= TCONS_00011522

Length=5533


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.122    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 6510429508


Query= TCONS_00011523

Length=3225


***** No hits found *****



Lambda      K        H        a         alpha
   0.300    0.120    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3928627412


Query= TCONS_00011524

Length=5538


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.123    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 6516428798


Query= TCONS_00011525

Length=3219


***** No hits found *****



Lambda      K        H        a         alpha
   0.300    0.120    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3921074780


Query= TCONS_00017751

Length=5538


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.123    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0727    0.140     1.90     42.6     43.6 

Effective search space used: 6516428798


Query= TCONS_00017752

Length=906
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432760 pfam12751, Vac7, Vacuolar segregation subunit 7. Vac7 ...  613     0.0  


>CDD:432760 pfam12751, Vac7, Vacuolar segregation subunit 7.  Vac7 is localized 
at the vacuole membrane, a location which is consistent 
with its involvement in vacuole morphology and inheritance. 
Vac7 has been shown to function as an upstream regulator 
of the Fab1 lipid kinase pathway. The Fab1 lipid pathway is 
important for correct regulation of membrane trafficking events.
Length=384

 Score = 613 bits (1584),  Expect = 0.0, Method: Composition-based stats.
 Identities = 264/387 (68%), Positives = 294/387 (76%), Gaps = 6/387 (2%)

Query  313  IVETETVTSIPQVSLGVVPGERGISGRVDSGTLRMKPSTETIRPRKEKRKT-RKPAALAS  371
             VETETV+SIPQV+LG   GERG SG  D+G+LR KPSTETIRP+KEK+KT RKP ++ S
Sbjct  1    TVETETVSSIPQVALGPGAGERGGSG-DDNGSLRTKPSTETIRPKKEKKKTTRKPPSVTS  59

Query  372  GAASSKADIFEAKVASAVDEADVSDSDETFVYESNPPDPYPVRQNRYHSRTPSATSMASQ  431
            G ASSKADIFEAKVASAVDEA+ SDSDETFVYESNPPDP P RQ RYHSRTPSATSMASQ
Sbjct  60   GTASSKADIFEAKVASAVDEANSSDSDETFVYESNPPDPEPRRQRRYHSRTPSATSMASQ  119

Query  432  VDQLAG-RARHSMRDSTHSITGKRSMKFTNNTYNSSVDGDA-GDESGRPLSRVDGNGTHT  489
             DQ AG R+ H + D  HS+TGKRSMKFTNN YNSS DGD   D+ GR  SR DG+G  T
Sbjct  120  ADQRAGLRSIHGVMDGGHSVTGKRSMKFTNNFYNSSNDGDGPDDDDGRGRSRGDGSGRGT  179

Query  490  PRHHHIGRYGRNSNVYPSLFDNDSPFPQSQGHAKSPRHFIGSGLRQSRHANSRTLPNYRT  549
            PRHHHIGR+GR  N +PSLFDNDSPFPQSQ    S      S     RH+ S    NYR 
Sbjct  180  PRHHHIGRWGRG-NGHPSLFDNDSPFPQSQKSRNSHLSRQSSRPTSPRHSISSGSRNYRG  238

Query  550  INGSKKASDMYPYDFDAEGADDERTPLVGSTRVSRSRHGGRRPGSASLRQMEYMQQRQRS  609
              GSKK  D Y YDFD EGADDERTPLVGS R  RSR G RRP SASLRQMEY QQR+RS
Sbjct  239  NGGSKKGGDEYGYDFDGEGADDERTPLVGSVRTGRSRRG-RRPNSASLRQMEYYQQRRRS  297

Query  610  YFSRYSICLIIGFLLLLAIGGATSFIIGITKPLVDVQVLAIQNVLASEQEIMLDLRVQAV  669
            + SR+  CL++  +LLL I GA  F+   T+PL DV+V+ IQNVLASEQE+MLDL V AV
Sbjct  298  FLSRFGSCLLLTLMLLLVISGAIGFMFATTQPLTDVEVVKIQNVLASEQELMLDLLVGAV  357

Query  670  NPNLFSVAVDDMDVNIFAKSRFVGTDK  696
            NPNL +V VDDMDVNIFAKS+ VGTD 
Sbjct  358  NPNLVAVTVDDMDVNIFAKSKHVGTDS  384



Lambda      K        H        a         alpha
   0.310    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1164201854


Query= TCONS_00011527

Length=750
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein. T...  147     4e-40


>CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein.  The CorA 
transport system is the primary Mg2+ influx system of Salmonella 
typhimurium and Escherichia coli. CorA is virtually ubiquitous 
in the Bacteria and Archaea. There are also eukaryotic 
relatives of this protein. The family includes the MRS2 
protein from yeast that is thought to be an RNA splicing protein. 
However its membership of this family suggests that its 
effect on splicing is due to altered magnesium levels in 
the cell.
Length=292

 Score = 147 bits (373),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 81/325 (25%), Positives = 144/325 (44%), Gaps = 39/325 (12%)

Query  422  WLDVLSPTDAEMRVIAKAFGIHALTAEDIMMQEAREKVELFRSYYFVNYRTFEQDPNSEN  481
            WLD+ SPT+AE+  +A+  G+  L  ED++  E R +VE +  Y+ +       D + E 
Sbjct  6    WLDLDSPTEAELEWLARTLGLDPLALEDLLDPEERPRVEDYDDYFLLVLPGVNLDDSEEA  65

Query  482  YLQPVNMYIVVFREGILSFHFSQTPHPANVRRRIRQLMDYLILSSDWISYALIDDITDVF  541
              + V + I++    +++      P    VR+R+  L     L    + Y L+D+I D F
Sbjct  66   D-ELVTVSILLGDNFLITVRHEPLPALDEVRKRLTLL-GGGPLDPGDLLYRLLDEIVDRF  123

Query  542  GPLIQSIEDEVDEIDERIMKMHSPGRIDTSVNPANRREDGDDVPEPPAPGEMLRRVGECR  601
              L++ +EDE+DE+++ +         D + N                  E+LR +   R
Sbjct  124  LELLEKLEDELDELEDELE--------DETNN------------------ELLRELAALR  157

Query  602  KKVMGMYRLLSNKADVVKGFAKRCNEHWEVAPKSEIGLYLGDIQDHILTMTSSLTYYETL  661
            + ++ + R L  + DV+    +R ++        E   YL D+ D +  +   L      
Sbjct  158  RSLVYLRRSLLPQRDVLNRLLRREDDPLL---DDEQKEYLRDLLDRLERLLEDLDALRER  214

Query  662  LSRAHSNYLAQINILMNERQEQTADVLGRLTVLGTIVLPMNIICGMWGMNVK-VPGQDID  720
            L      Y + ++       E+T  V+  LTV+  I LP+ +I G++GMN   +P  +  
Sbjct  215  LRSLQDEYSSLLS-------ERTNRVMKVLTVVTAIFLPLTLITGIYGMNFGGLPELEWS  267

Query  721  NLWWFWSITGGLILFAFASFLIAKR  745
              + F  I G +IL A       +R
Sbjct  268  YGYPFVLILGLMILLAILLLFYFRR  292



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 954579712


Query= TCONS_00011528

Length=877
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein. T...  149     2e-40


>CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein.  The CorA 
transport system is the primary Mg2+ influx system of Salmonella 
typhimurium and Escherichia coli. CorA is virtually ubiquitous 
in the Bacteria and Archaea. There are also eukaryotic 
relatives of this protein. The family includes the MRS2 
protein from yeast that is thought to be an RNA splicing protein. 
However its membership of this family suggests that its 
effect on splicing is due to altered magnesium levels in 
the cell.
Length=292

 Score = 149 bits (377),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 81/325 (25%), Positives = 144/325 (44%), Gaps = 39/325 (12%)

Query  549  WLDVLSPTDAEMRVIAKAFGIHALTAEDIMMQEAREKVELFRSYYFVNYRTFEQDPNSEN  608
            WLD+ SPT+AE+  +A+  G+  L  ED++  E R +VE +  Y+ +       D + E 
Sbjct  6    WLDLDSPTEAELEWLARTLGLDPLALEDLLDPEERPRVEDYDDYFLLVLPGVNLDDSEEA  65

Query  609  YLQPVNMYIVVFREGILSFHFSQTPHPANVRRRIRQLMDYLILSSDWISYALIDDITDVF  668
              + V + I++    +++      P    VR+R+  L     L    + Y L+D+I D F
Sbjct  66   D-ELVTVSILLGDNFLITVRHEPLPALDEVRKRLTLL-GGGPLDPGDLLYRLLDEIVDRF  123

Query  669  GPLIQSIEDEVDEIDERIMKMHSPGRIDTSVNPANRREDGDDVPEPPAPGEMLRRVGECR  728
              L++ +EDE+DE+++ +         D + N                  E+LR +   R
Sbjct  124  LELLEKLEDELDELEDELE--------DETNN------------------ELLRELAALR  157

Query  729  KKVMGMYRLLSNKADVVKGFAKRCNEHWEVAPKSEIGLYLGDIQDHILTMTSSLTYYETL  788
            + ++ + R L  + DV+    +R ++        E   YL D+ D +  +   L      
Sbjct  158  RSLVYLRRSLLPQRDVLNRLLRREDDPLL---DDEQKEYLRDLLDRLERLLEDLDALRER  214

Query  789  LSRAHSNYLAQINILMNERQEQTADVLGRLTVLGTIVLPMNIICGMWGMNVK-VPGQDID  847
            L      Y + ++       E+T  V+  LTV+  I LP+ +I G++GMN   +P  +  
Sbjct  215  LRSLQDEYSSLLS-------ERTNRVMKVLTVVTAIFLPLTLITGIYGMNFGGLPELEWS  267

Query  848  NLWWFWSITGGLILFAFASFLIAKR  872
              + F  I G +IL A       +R
Sbjct  268  YGYPFVLILGLMILLAILLLFYFRR  292



Lambda      K        H        a         alpha
   0.315    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1122571948


Query= TCONS_00017753

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein. T...  142     7e-39


>CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein.  The CorA 
transport system is the primary Mg2+ influx system of Salmonella 
typhimurium and Escherichia coli. CorA is virtually ubiquitous 
in the Bacteria and Archaea. There are also eukaryotic 
relatives of this protein. The family includes the MRS2 
protein from yeast that is thought to be an RNA splicing protein. 
However its membership of this family suggests that its 
effect on splicing is due to altered magnesium levels in 
the cell.
Length=292

 Score = 142 bits (361),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 80/325 (25%), Positives = 143/325 (44%), Gaps = 39/325 (12%)

Query  262  WLDVLSPTDAEMRVIAKAFGIHALTAEDIMMQEAREKVELFRSYYFVNYRTFEQDPNSEN  321
            WLD+ SPT+AE+  +A+  G+  L  ED++  E R +VE +  Y+ +       D + E 
Sbjct  6    WLDLDSPTEAELEWLARTLGLDPLALEDLLDPEERPRVEDYDDYFLLVLPGVNLDDSEEA  65

Query  322  YLQPVNMYIVVFREGILSFHFSQTPHPANVRRRIRQLMDYLILSSDWISYALIDDITDVF  381
              + V + I++    +++      P    VR+R+  L     L    + Y L+D+I D F
Sbjct  66   D-ELVTVSILLGDNFLITVRHEPLPALDEVRKRLTLL-GGGPLDPGDLLYRLLDEIVDRF  123

Query  382  GPLIQSIEDEVDEIDERIMKMHSPGRIDTSVNPANRREDGDDVPEPPAPGEMLRRVGECR  441
              L++ +EDE+DE+++ +         D + N                  E+LR +   R
Sbjct  124  LELLEKLEDELDELEDELE--------DETNN------------------ELLRELAALR  157

Query  442  KKVMGMYRLLSNKADVVKGFAKRCNEHWEVAPKSEIGLYLGDIQDHILTMTSSLTYYETL  501
            + ++ + R L  + DV+    +R ++        E   YL D+ D +  +   L      
Sbjct  158  RSLVYLRRSLLPQRDVLNRLLRREDDPLL---DDEQKEYLRDLLDRLERLLEDLDALRER  214

Query  502  LSRAHSNYLAQINILMNERQEQTADVLGRLTVLGTIVLPMNIICGMWGMNVK-VPGQDID  560
            L      Y + ++       E+T  V+  LTV+  I LP+ +I G++GMN   +P  +  
Sbjct  215  LRSLQDEYSSLLS-------ERTNRVMKVLTVVTAIFLPLTLITGIYGMNFGGLPELEWS  267

Query  561  NLWWFWSSTGGLILFAFASFLIAKR  585
              + F    G +IL A       +R
Sbjct  268  YGYPFVLILGLMILLAILLLFYFRR  292



Lambda      K        H        a         alpha
   0.317    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 744225144


Query= TCONS_00011529

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00011530

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  131     1e-36


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 131 bits (333),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 116/302 (38%), Gaps = 75/302 (25%)

Query  79   VMGLIVGAGCNATVPFRITDLHELKTRHIRAREPDALETLVSTEWTLSSAAAPLHELGIT  138
             +GLI+G G NA    +++++ +L+      + P + E +++TEW   +           
Sbjct  1    RIGLILGTGTNAAYVEKVSNIPKLE-----GKLPKSGEMIINTEW--GAFGDNGLLPLPR  53

Query  139  TSWDTELDMHSQRPGFQPFEYMVGGRYIGELVRIICYDWFNRSLGMARSAL-----PLKL  193
            T +D ELD  S  PGFQPFE M+ G Y+GELVR++  D       +A   L       KL
Sbjct  54   TEYDKELDAESPNPGFQPFEKMISGMYLGELVRLVLLD-------LAEEGLLFKGQSEKL  106

Query  194  VKEYSLTTDFLSLFVASNYSNERLASDLSKRL--PPPPTSSWRWTPNLAGDVRAIASAVQ  251
               YSL T FLS   +    +     ++ + L      T   R        VR I  AV 
Sbjct  107  KTPYSLDTSFLSAIESDPSEDLETTREILEELLGIETVTEEDRKI------VRRICEAVS  160

Query  252  DRAASLVAAAVVGLLACTREIQLRSPDSLSAKIDQHAHIAPKGTEPYDLHSRFSSKSGWR  311
             R           L+A            ++A I +      K T                
Sbjct  161  TR--------AARLVAA----------GIAA-ILKKIGRDKKVT----------------  185

Query  312  NGPEELAVAVSGGVIQHYPHYKETVQRYIDRLILCAGPQEGGRSVFLREVSDGGIIGIGV  371
                   V V G V + YP ++E +Q  +  L+        G  V L    DG  +G  +
Sbjct  186  -------VGVDGSVYEKYPGFRERLQEALRELL------GPGDKVVLVLAEDGSGVGAAL  232

Query  372  LA  373
            +A
Sbjct  233  IA  234



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500176124


Query= TCONS_00017754

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  131     1e-36


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 131 bits (333),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 116/302 (38%), Gaps = 75/302 (25%)

Query  79   VMGLIVGAGCNATVPFRITDLHELKTRHIRAREPDALETLVSTEWTLSSAAAPLHELGIT  138
             +GLI+G G NA    +++++ +L+      + P + E +++TEW   +           
Sbjct  1    RIGLILGTGTNAAYVEKVSNIPKLE-----GKLPKSGEMIINTEW--GAFGDNGLLPLPR  53

Query  139  TSWDTELDMHSQRPGFQPFEYMVGGRYIGELVRIICYDWFNRSLGMARSAL-----PLKL  193
            T +D ELD  S  PGFQPFE M+ G Y+GELVR++  D       +A   L       KL
Sbjct  54   TEYDKELDAESPNPGFQPFEKMISGMYLGELVRLVLLD-------LAEEGLLFKGQSEKL  106

Query  194  VKEYSLTTDFLSLFVASNYSNERLASDLSKRL--PPPPTSSWRWTPNLAGDVRAIASAVQ  251
               YSL T FLS   +    +     ++ + L      T   R        VR I  AV 
Sbjct  107  KTPYSLDTSFLSAIESDPSEDLETTREILEELLGIETVTEEDRKI------VRRICEAVS  160

Query  252  DRAASLVAAAVVGLLACTREIQLRSPDSLSAKIDQHAHIAPKGTEPYDLHSRFSSKSGWR  311
             R           L+A            ++A I +      K T                
Sbjct  161  TR--------AARLVAA----------GIAA-ILKKIGRDKKVT----------------  185

Query  312  NGPEELAVAVSGGVIQHYPHYKETVQRYIDRLILCAGPQEGGRSVFLREVSDGGIIGIGV  371
                   V V G V + YP ++E +Q  +  L+        G  V L    DG  +G  +
Sbjct  186  -------VGVDGSVYEKYPGFRERLQEALRELL------GPGDKVVLVLAEDGSGVGAAL  232

Query  372  LA  373
            +A
Sbjct  233  IA  234



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500176124


Query= TCONS_00011531

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  131     1e-36


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 131 bits (333),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 116/302 (38%), Gaps = 75/302 (25%)

Query  79   VMGLIVGAGCNATVPFRITDLHELKTRHIRAREPDALETLVSTEWTLSSAAAPLHELGIT  138
             +GLI+G G NA    +++++ +L+      + P + E +++TEW   +           
Sbjct  1    RIGLILGTGTNAAYVEKVSNIPKLE-----GKLPKSGEMIINTEW--GAFGDNGLLPLPR  53

Query  139  TSWDTELDMHSQRPGFQPFEYMVGGRYIGELVRIICYDWFNRSLGMARSAL-----PLKL  193
            T +D ELD  S  PGFQPFE M+ G Y+GELVR++  D       +A   L       KL
Sbjct  54   TEYDKELDAESPNPGFQPFEKMISGMYLGELVRLVLLD-------LAEEGLLFKGQSEKL  106

Query  194  VKEYSLTTDFLSLFVASNYSNERLASDLSKRL--PPPPTSSWRWTPNLAGDVRAIASAVQ  251
               YSL T FLS   +    +     ++ + L      T   R        VR I  AV 
Sbjct  107  KTPYSLDTSFLSAIESDPSEDLETTREILEELLGIETVTEEDRKI------VRRICEAVS  160

Query  252  DRAASLVAAAVVGLLACTREIQLRSPDSLSAKIDQHAHIAPKGTEPYDLHSRFSSKSGWR  311
             R           L+A            ++A I +      K T                
Sbjct  161  TR--------AARLVAA----------GIAA-ILKKIGRDKKVT----------------  185

Query  312  NGPEELAVAVSGGVIQHYPHYKETVQRYIDRLILCAGPQEGGRSVFLREVSDGGIIGIGV  371
                   V V G V + YP ++E +Q  +  L+        G  V L    DG  +G  +
Sbjct  186  -------VGVDGSVYEKYPGFRERLQEALRELL------GPGDKVVLVLAEDGSGVGAAL  232

Query  372  LA  373
            +A
Sbjct  233  IA  234



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500176124


Query= TCONS_00011532

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00011533

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459726 pfam00240, ubiquitin, Ubiquitin family. This family co...  91.1    9e-27
CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like...  61.0    6e-15


>CDD:459726 pfam00240, ubiquitin, Ubiquitin family.  This family contains 
a number of ubiquitin-like proteins: SUMO (smt3 homolog), Nedd8, 
Elongin B, Rub1, and Parkin. A number of them are thought 
to carry a distinctive five-residue motif termed the proteasome-interacting 
motif (PIM), which may have a biologically 
significant role in protein delivery to proteasomes and recruitment 
of proteasomes to transcription sites.
Length=72

 Score = 91.1 bits (227),  Expect = 9e-27, Method: Composition-based stats.
 Identities = 38/72 (53%), Positives = 53/72 (74%), Gaps = 0/72 (0%)

Query  3   IKVRTLTGKEIELDIEPDYKVSRIKERVEEKEGIPPVQQRLIFGGKQMADDKTAAEYNLE  62
           I V+TL GK+I L+++P   V  +KE++ EKEG+PP QQRLI+ GK + DD+T  EY +E
Sbjct  1   ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  63  GGATLHLVLALR  74
            G+T+HLVL  R
Sbjct  61  DGSTIHLVLRQR  72


>CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like.  The 
small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, 
and although SUMO-1 shares structural similarity to Ub, 
SUMO's cellular functions remain distinct insomuch as SUMO 
modification alters protein function through changes in activity, 
cellular localization, or by protecting substrates from 
ubiquitination. Rad60 family members contain functionally 
enigmatic, integral SUMO-like domains (SLDs). Despite their 
divergence from SUMO, each Rad60 SLD interacts with a subset 
of SUMO pathway enzymes: SLD2 specifically binds the SUMO 
E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO 
E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called 
Siz1 and Siz2) specificity enzymes. Structural analysis 
of Structure 2uyz reveals a mechanistic basis for the near-synonymous 
roles of Rad60 and SUMO in survival of genotoxic 
stress and suggest unprecedented DNA-damage-response functions 
for SLDs in regulating SUMOylation. The Rad60 branch of this 
family is also known as RENi (Rad60-Esc2-Nip45), and biologically 
it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45).
Length=72

 Score = 61.0 bits (149),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query  1   MLIKVRTLTGKEIELDIEPDYKVSRIKERVEEKEGIPPVQQ-RLIFGGKQMADDKTAAEY  59
           + I ++   GKE+ + ++P   VS++     +K GIPP QQ RLIF G+++  + T  + 
Sbjct  1   IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDL  60

Query  60  NLEGGATLHLVL  71
           ++E G T+ +V+
Sbjct  61  DIEDGDTIDVVI  72



Lambda      K        H        a         alpha
   0.316    0.138    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0802    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00017756

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459726 pfam00240, ubiquitin, Ubiquitin family. This family co...  91.1    9e-27
CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like...  61.0    6e-15


>CDD:459726 pfam00240, ubiquitin, Ubiquitin family.  This family contains 
a number of ubiquitin-like proteins: SUMO (smt3 homolog), Nedd8, 
Elongin B, Rub1, and Parkin. A number of them are thought 
to carry a distinctive five-residue motif termed the proteasome-interacting 
motif (PIM), which may have a biologically 
significant role in protein delivery to proteasomes and recruitment 
of proteasomes to transcription sites.
Length=72

 Score = 91.1 bits (227),  Expect = 9e-27, Method: Composition-based stats.
 Identities = 38/72 (53%), Positives = 53/72 (74%), Gaps = 0/72 (0%)

Query  3   IKVRTLTGKEIELDIEPDYKVSRIKERVEEKEGIPPVQQRLIFGGKQMADDKTAAEYNLE  62
           I V+TL GK+I L+++P   V  +KE++ EKEG+PP QQRLI+ GK + DD+T  EY +E
Sbjct  1   ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  63  GGATLHLVLALR  74
            G+T+HLVL  R
Sbjct  61  DGSTIHLVLRQR  72


>CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like.  The 
small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, 
and although SUMO-1 shares structural similarity to Ub, 
SUMO's cellular functions remain distinct insomuch as SUMO 
modification alters protein function through changes in activity, 
cellular localization, or by protecting substrates from 
ubiquitination. Rad60 family members contain functionally 
enigmatic, integral SUMO-like domains (SLDs). Despite their 
divergence from SUMO, each Rad60 SLD interacts with a subset 
of SUMO pathway enzymes: SLD2 specifically binds the SUMO 
E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO 
E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called 
Siz1 and Siz2) specificity enzymes. Structural analysis 
of Structure 2uyz reveals a mechanistic basis for the near-synonymous 
roles of Rad60 and SUMO in survival of genotoxic 
stress and suggest unprecedented DNA-damage-response functions 
for SLDs in regulating SUMOylation. The Rad60 branch of this 
family is also known as RENi (Rad60-Esc2-Nip45), and biologically 
it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45).
Length=72

 Score = 61.0 bits (149),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query  1   MLIKVRTLTGKEIELDIEPDYKVSRIKERVEEKEGIPPVQQ-RLIFGGKQMADDKTAAEY  59
           + I ++   GKE+ + ++P   VS++     +K GIPP QQ RLIF G+++  + T  + 
Sbjct  1   IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDL  60

Query  60  NLEGGATLHLVL  71
           ++E G T+ +V+
Sbjct  61  DIEDGDTIDVVI  72



Lambda      K        H        a         alpha
   0.316    0.138    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00011534

Length=80
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459726 pfam00240, ubiquitin, Ubiquitin family. This family co...  90.3    2e-26
CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like...  58.3    8e-14


>CDD:459726 pfam00240, ubiquitin, Ubiquitin family.  This family contains 
a number of ubiquitin-like proteins: SUMO (smt3 homolog), Nedd8, 
Elongin B, Rub1, and Parkin. A number of them are thought 
to carry a distinctive five-residue motif termed the proteasome-interacting 
motif (PIM), which may have a biologically 
significant role in protein delivery to proteasomes and recruitment 
of proteasomes to transcription sites.
Length=72

 Score = 90.3 bits (225),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 52/72 (72%), Gaps = 0/72 (0%)

Query  4   FRVRTLTGKEIELDIEPDYKVSRIKERVEEKEGIPPVQQRLIFGGKQMADDKTAAEYNLE  63
             V+TL GK+I L+++P   V  +KE++ EKEG+PP QQRLI+ GK + DD+T  EY +E
Sbjct  1   ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  64  GGATLHLVLALR  75
            G+T+HLVL  R
Sbjct  61  DGSTIHLVLRQR  72


>CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like.  The 
small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, 
and although SUMO-1 shares structural similarity to Ub, 
SUMO's cellular functions remain distinct insomuch as SUMO 
modification alters protein function through changes in activity, 
cellular localization, or by protecting substrates from 
ubiquitination. Rad60 family members contain functionally 
enigmatic, integral SUMO-like domains (SLDs). Despite their 
divergence from SUMO, each Rad60 SLD interacts with a subset 
of SUMO pathway enzymes: SLD2 specifically binds the SUMO 
E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO 
E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called 
Siz1 and Siz2) specificity enzymes. Structural analysis 
of Structure 2uyz reveals a mechanistic basis for the near-synonymous 
roles of Rad60 and SUMO in survival of genotoxic 
stress and suggest unprecedented DNA-damage-response functions 
for SLDs in regulating SUMOylation. The Rad60 branch of this 
family is also known as RENi (Rad60-Esc2-Nip45), and biologically 
it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45).
Length=72

 Score = 58.3 bits (142),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 23/68 (34%), Positives = 42/68 (62%), Gaps = 1/68 (1%)

Query  6   VRTLTGKEIELDIEPDYKVSRIKERVEEKEGIPPVQQ-RLIFGGKQMADDKTAAEYNLEG  64
           ++   GKE+ + ++P   VS++     +K GIPP QQ RLIF G+++  + T  + ++E 
Sbjct  5   LKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDLDIED  64

Query  65  GATLHLVL  72
           G T+ +V+
Sbjct  65  GDTIDVVI  72



Lambda      K        H        a         alpha
   0.318    0.140    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00011535

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00011537

Length=118
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460769 pfam02970, TBCA, Tubulin binding cofactor A                86.8    3e-24


>CDD:460769 pfam02970, TBCA, Tubulin binding cofactor A.  
Length=99

 Score = 86.8 bits (216),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 7/106 (7%)

Query  2    APRSQLEIATSSVERLVKEEASYHRELQQQTERIQKLESQEPGEDENREYMLKQERLALE  61
                QL+I T  V+RLVKEEASY +EL++Q  R++KL+      D   EY LK++   LE
Sbjct  1    PRPRQLKIKTGVVKRLVKEEASYEKELEEQEARLEKLK-----ADGADEYDLKKQEEVLE  55

Query  62   ETKKVLPSLKQKIDEAVAKLESLLAEEGKKGPESNVEQITAGKEAI  107
            ETK ++P LK++++EAV  LE  L EE   G ++  E++TA KEA+
Sbjct  56   ETKAMIPDLKKRLEEAVEDLEEFLEEEEDLGADT--EELTAAKEAL  99



Lambda      K        H        a         alpha
   0.302    0.120    0.294    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00011536

Length=118
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460769 pfam02970, TBCA, Tubulin binding cofactor A                86.8    3e-24


>CDD:460769 pfam02970, TBCA, Tubulin binding cofactor A.  
Length=99

 Score = 86.8 bits (216),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 7/106 (7%)

Query  2    APRSQLEIATSSVERLVKEEASYHRELQQQTERIQKLESQEPGEDENREYMLKQERLALE  61
                QL+I T  V+RLVKEEASY +EL++Q  R++KL+      D   EY LK++   LE
Sbjct  1    PRPRQLKIKTGVVKRLVKEEASYEKELEEQEARLEKLK-----ADGADEYDLKKQEEVLE  55

Query  62   ETKKVLPSLKQKIDEAVAKLESLLAEEGKKGPESNVEQITAGKEAI  107
            ETK ++P LK++++EAV  LE  L EE   G ++  E++TA KEA+
Sbjct  56   ETKAMIPDLKKRLEEAVEDLEEFLEEEEDLGADT--EELTAAKEAL  99



Lambda      K        H        a         alpha
   0.302    0.120    0.294    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00011538

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.123    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00011539

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.123    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00017757

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            109     8e-27
CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TR...  82.8    3e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 109 bits (274),  Expect = 8e-27, Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 136/399 (34%), Gaps = 60/399 (15%)

Query  30   LAVSLLITFVDQNGISVTLP-TIAKDLNA-ENTISWAGTSSLIANTMFSVLYGRLSDIFG  87
            L ++  +  + ++ +   LP  +A+DL      I    T   +   +   L GRLSD FG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  88   RKIVYLSALALLCIADLLCGLSQNAAMFYVFRGLAGIAGGGVGSLTMIIVSDIVTLENRG  147
            R+ V L  L L  +  LL   + +  +  V R L G+  G +    + +++D    E RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  148  KYQGILGASLGLGNVIGPFIAGAFIMHSTWRGLFWLISPLAACSMVVGVFLIPNNACKVG  207
            +  G++ A  GLG  +GP + G       WR  F +++ L+  + V+ +   P       
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE----  176

Query  208  VRENVSKIDFYGIIASSIGIIFLLIPISGGGSYFQWNSAMVISMLVIGACSLVAFVFIEW  267
                                                      S     A      + + W
Sbjct  177  ------------------------------------------SKRPKPAEEARLSLIVAW  194

Query  268  KVASLPMLPVVFFKNKVLCALFLQSFLLGAVYQSYLYYLPLYYQNARGWSPIVSAAMTAP  327
            K            ++ VL  L     LL       L      YQ   G S +++  +   
Sbjct  195  K---------ALLRDPVLWLLLA--LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGL  243

Query  328  MVGCQALASIASGQYISRTKRYGEVIWAGFGLWTLGAGLMLLFNSHTHRAVIVVVVAITG  387
                 A+  +  G+   R  R   ++ A   L     GL+LL  + +    +++ + + G
Sbjct  244  GGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLS-SLWLLLALLLLG  302

Query  388  IGIGWTFQPTLIAFQAHCTKSHRAVVISNRNFFRCLGGA  426
             G G  F            K  R       N    LGGA
Sbjct  303  FGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGA  341


>CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12).  
This family consists of several fungal specific trichothecene 
efflux pump proteins. Many of the genes involved in trichothecene 
toxin biosynthesis in Fusarium sporotrichioides are 
present within a gene cluster.It has been suggested that TRI12 
may play a role in F. sporotrichioides self-protection against 
trichothecenes.
Length=598

 Score = 82.8 bits (204),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 111/489 (23%), Positives = 200/489 (41%), Gaps = 56/489 (11%)

Query  22   QLLVVFAGLAVSLLITFVDQNGISVTLPTIAKDLNAENTISWAGTSSLIANTMFSVLYGR  81
            +++  FA  ++++  T+      +  LP I +D+          T   +   +  ++ GR
Sbjct  41   RIIASFAAFSLNVCATYFVLQASASALPNILQDIGQSENQGLFSTLWTMGQAVSILMMGR  100

Query  82   LSDIFGRKIVYLSALALLCIADLLCGLSQN------AAMFYVFRGLAGIAGGGVGSLTMI  135
            L+D FGR+  ++ A  ++ +   + G + N      AAM      L G+A G  G+  + 
Sbjct  101  LTDRFGRR-PFVIATHIIGLVGAIVGCTANKFNTLLAAM-----TLLGVAAGPAGASPLF  154

Query  136  IVSDIVTLENRGKYQGILGASLGL--GNVIGPFIAGAFIMHSTWRGLFWL--ISPLAACS  191
            I      + N+ K+ G+L  S      N  GP+      +   WR +F++  I    A  
Sbjct  155  IGE---LMSNKTKFLGLLIVSAPTIAMNGAGPYFGQRLAIQGNWRWIFYIYIIMSAIAVL  211

Query  192  MVVGVFLIPN----NACKVGVRENVSKIDFYGIIASSIGIIFLLIPIS-GGGSYFQWNSA  246
            +++  +  P+    +  K   R+ ++K+D+ GI     G    L+ +S GG     WNSA
Sbjct  212  LIIIWYHPPSFAQLHGKKARKRDELAKLDWIGIFLVIAGTSLFLLGVSWGGKPNNPWNSA  271

Query  247  MVISMLVIGACSLVAFVFIE-WKVASLPMLPVVFFKNK--VLCALFLQSFLLGAVYQSYL  303
             +I ++  GA SLV F   E +     P++P   FK+    +C L + S ++GA++    
Sbjct  272  KIIGLISSGAGSLVIFALYEVFGKPEQPIIPPALFKDTRGFVCILIISS-IMGAMHLCLT  330

Query  304  YYLPLYYQNARG-----WSPIVSAAMTAPMVGCQALASIASGQYISRTKRYGEVIWAGFG  358
               P    N  G     W      + TA       +  + +  ++ R  R+  ++ A   
Sbjct  331  IIYPQQVINIFGSSLKNWEETAWMSATASFGTGAGVMILGNLFHLIRHIRWQILVGA---  387

Query  359  LW-TLGAGLMLLFNSHTHRAVIVVVVAITGIGIGWTFQPTLIAFQAHCTKSHR----AVV  413
            LW T   G M   N   ++   + +   +G  + W    T++  Q   T        AVV
Sbjct  388  LWLTAFLGAMSSIN-RDNKNAAIALSFFSGFVVAWAQDITMLLVQFITTDEDLGVAFAVV  446

Query  414  ISNRNFFRCLGGACGLAVSAAILQATLRSNLPNGY-RYLAHSTYSLPPQSDISASDWSQI  472
             + R F              +I  A   S   N Y + +A    S    +D   + +  +
Sbjct  447  AAARPFA------------GSIFTAAFISLYSNQYPKEIASHLSSALRGTDFPQASFPSL  494

Query  473  LDAYAKASR  481
            L+A AK+ R
Sbjct  495  LEA-AKSGR  502



Lambda      K        H        a         alpha
   0.325    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00017758

Length=118
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460769 pfam02970, TBCA, Tubulin binding cofactor A                86.8    3e-24


>CDD:460769 pfam02970, TBCA, Tubulin binding cofactor A.  
Length=99

 Score = 86.8 bits (216),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 7/106 (7%)

Query  2    APRSQLEIATSSVERLVKEEASYHRELQQQTERIQKLESQEPGEDENREYMLKQERLALE  61
                QL+I T  V+RLVKEEASY +EL++Q  R++KL+      D   EY LK++   LE
Sbjct  1    PRPRQLKIKTGVVKRLVKEEASYEKELEEQEARLEKLK-----ADGADEYDLKKQEEVLE  55

Query  62   ETKKVLPSLKQKIDEAVAKLESLLAEEGKKGPESNVEQITAGKEAI  107
            ETK ++P LK++++EAV  LE  L EE   G ++  E++TA KEA+
Sbjct  56   ETKAMIPDLKKRLEEAVEDLEEFLEEEEDLGADT--EELTAAKEAL  99



Lambda      K        H        a         alpha
   0.302    0.120    0.294    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00017759

Length=118
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460769 pfam02970, TBCA, Tubulin binding cofactor A                86.8    3e-24


>CDD:460769 pfam02970, TBCA, Tubulin binding cofactor A.  
Length=99

 Score = 86.8 bits (216),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 7/106 (7%)

Query  2    APRSQLEIATSSVERLVKEEASYHRELQQQTERIQKLESQEPGEDENREYMLKQERLALE  61
                QL+I T  V+RLVKEEASY +EL++Q  R++KL+      D   EY LK++   LE
Sbjct  1    PRPRQLKIKTGVVKRLVKEEASYEKELEEQEARLEKLK-----ADGADEYDLKKQEEVLE  55

Query  62   ETKKVLPSLKQKIDEAVAKLESLLAEEGKKGPESNVEQITAGKEAI  107
            ETK ++P LK++++EAV  LE  L EE   G ++  E++TA KEA+
Sbjct  56   ETKAMIPDLKKRLEEAVEDLEEFLEEEEDLGADT--EELTAAKEAL  99



Lambda      K        H        a         alpha
   0.302    0.120    0.294    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00011541

Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460769 pfam02970, TBCA, Tubulin binding cofactor A                83.3    1e-22


>CDD:460769 pfam02970, TBCA, Tubulin binding cofactor A.  
Length=99

 Score = 83.3 bits (207),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 49/108 (45%), Positives = 69/108 (64%), Gaps = 9/108 (8%)

Query  2    APRSQLEIATSSVERLVKEEASYHRELQQQTERIQKLESQEPGEDENREYMLKQEMQRLA  61
                QL+I T  V+RLVKEEASY +EL++Q  R++KL+      D   EY LK+  Q   
Sbjct  1    PRPRQLKIKTGVVKRLVKEEASYEKELEEQEARLEKLK-----ADGADEYDLKK--QEEV  53

Query  62   LEETKKVLPSLKQKIDEAVAKLESLLAEEGKKGPESNVEQITAGKEAI  109
            LEETK ++P LK++++EAV  LE  L EE   G ++  E++TA KEA+
Sbjct  54   LEETKAMIPDLKKRLEEAVEDLEEFLEEEEDLGADT--EELTAAKEAL  99



Lambda      K        H        a         alpha
   0.302    0.120    0.294    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00017760

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.123    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00017761

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            87.5    7e-20
CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TR...  76.2    1e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 87.5 bits (217),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 46/173 (27%), Positives = 80/173 (46%), Gaps = 2/173 (1%)

Query  30   LAVSLLITFVDQNGISVTLP-TIAKDLNA-ENTISWAGTSSLIANTMFSVLYGRLSDIFG  87
            L ++  +  + ++ +   LP  +A+DL      I    T   +   +   L GRLSD FG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  88   RKIVYLSALALLCIADLLCGLSQNAAMFYVFRGLAGIAGGGVGSLTMIIVSDIVTLENRG  147
            R+ V L  L L  +  LL   + +  +  V R L G+  G +    + +++D    E RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  148  KYQGILGASLGLGNVIGPFIAGAFIMHSTWRGLFWLISPLAACSMVVGVFLIP  200
            +  G++ A  GLG  +GP + G       WR  F +++ L+  + V+ +   P
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRP  173


>CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12).  
This family consists of several fungal specific trichothecene 
efflux pump proteins. Many of the genes involved in trichothecene 
toxin biosynthesis in Fusarium sporotrichioides are 
present within a gene cluster.It has been suggested that TRI12 
may play a role in F. sporotrichioides self-protection against 
trichothecenes.
Length=598

 Score = 76.2 bits (187),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 135/298 (45%), Gaps = 28/298 (9%)

Query  22   QLLVVFAGLAVSLLITFVDQNGISVTLPTIAKDLNAENTISWAGTSSLIANTMFSVLYGR  81
            +++  FA  ++++  T+      +  LP I +D+          T   +   +  ++ GR
Sbjct  41   RIIASFAAFSLNVCATYFVLQASASALPNILQDIGQSENQGLFSTLWTMGQAVSILMMGR  100

Query  82   LSDIFGRKIVYLSALALLCIADLLCGLSQN------AAMFYVFRGLAGIAGGGVGSLTMI  135
            L+D FGR+  ++ A  ++ +   + G + N      AAM      L G+A G  G+  + 
Sbjct  101  LTDRFGRR-PFVIATHIIGLVGAIVGCTANKFNTLLAAM-----TLLGVAAGPAGASPLF  154

Query  136  IVSDIVTLENRGKYQGILGASLGL--GNVIGPFIAGAFIMHSTWRGLFWL--ISPLAACS  191
            I      + N+ K+ G+L  S      N  GP+      +   WR +F++  I    A  
Sbjct  155  IGE---LMSNKTKFLGLLIVSAPTIAMNGAGPYFGQRLAIQGNWRWIFYIYIIMSAIAVL  211

Query  192  MVVGVFLIPN----NACKVGVRENVSKIDFYGIIASSIGIIFLLIPIS-GGGSYFQWNSA  246
            +++  +  P+    +  K   R+ ++K+D+ GI     G    L+ +S GG     WNSA
Sbjct  212  LIIIWYHPPSFAQLHGKKARKRDELAKLDWIGIFLVIAGTSLFLLGVSWGGKPNNPWNSA  271

Query  247  MVISMLVIGACSLVAFVFIE-WKVASLPMLPVVFFKNK--VLCALFLQSFLLGAVYQS  301
             +I ++  GA SLV F   E +     P++P   FK+    +C L + S ++GA++  
Sbjct  272  KIIGLISSGAGSLVIFALYEVFGKPEQPIIPPALFKDTRGFVCILIISS-IMGAMHLC  328



Lambda      K        H        a         alpha
   0.327    0.141    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00011542

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            109     8e-27
CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TR...  82.8    3e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 109 bits (274),  Expect = 8e-27, Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 136/399 (34%), Gaps = 60/399 (15%)

Query  30   LAVSLLITFVDQNGISVTLP-TIAKDLNA-ENTISWAGTSSLIANTMFSVLYGRLSDIFG  87
            L ++  +  + ++ +   LP  +A+DL      I    T   +   +   L GRLSD FG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  88   RKIVYLSALALLCIADLLCGLSQNAAMFYVFRGLAGIAGGGVGSLTMIIVSDIVTLENRG  147
            R+ V L  L L  +  LL   + +  +  V R L G+  G +    + +++D    E RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  148  KYQGILGASLGLGNVIGPFIAGAFIMHSTWRGLFWLISPLAACSMVVGVFLIPNNACKVG  207
            +  G++ A  GLG  +GP + G       WR  F +++ L+  + V+ +   P       
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE----  176

Query  208  VRENVSKIDFYGIIASSIGIIFLLIPISGGGSYFQWNSAMVISMLVIGACSLVAFVFIEW  267
                                                      S     A      + + W
Sbjct  177  ------------------------------------------SKRPKPAEEARLSLIVAW  194

Query  268  KVASLPMLPVVFFKNKVLCALFLQSFLLGAVYQSYLYYLPLYYQNARGWSPIVSAAMTAP  327
            K            ++ VL  L     LL       L      YQ   G S +++  +   
Sbjct  195  K---------ALLRDPVLWLLLA--LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGL  243

Query  328  MVGCQALASIASGQYISRTKRYGEVIWAGFGLWTLGAGLMLLFNSHTHRAVIVVVVAITG  387
                 A+  +  G+   R  R   ++ A   L     GL+LL  + +    +++ + + G
Sbjct  244  GGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLS-SLWLLLALLLLG  302

Query  388  IGIGWTFQPTLIAFQAHCTKSHRAVVISNRNFFRCLGGA  426
             G G  F            K  R       N    LGGA
Sbjct  303  FGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGA  341


>CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12).  
This family consists of several fungal specific trichothecene 
efflux pump proteins. Many of the genes involved in trichothecene 
toxin biosynthesis in Fusarium sporotrichioides are 
present within a gene cluster.It has been suggested that TRI12 
may play a role in F. sporotrichioides self-protection against 
trichothecenes.
Length=598

 Score = 82.8 bits (204),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 111/489 (23%), Positives = 200/489 (41%), Gaps = 56/489 (11%)

Query  22   QLLVVFAGLAVSLLITFVDQNGISVTLPTIAKDLNAENTISWAGTSSLIANTMFSVLYGR  81
            +++  FA  ++++  T+      +  LP I +D+          T   +   +  ++ GR
Sbjct  41   RIIASFAAFSLNVCATYFVLQASASALPNILQDIGQSENQGLFSTLWTMGQAVSILMMGR  100

Query  82   LSDIFGRKIVYLSALALLCIADLLCGLSQN------AAMFYVFRGLAGIAGGGVGSLTMI  135
            L+D FGR+  ++ A  ++ +   + G + N      AAM      L G+A G  G+  + 
Sbjct  101  LTDRFGRR-PFVIATHIIGLVGAIVGCTANKFNTLLAAM-----TLLGVAAGPAGASPLF  154

Query  136  IVSDIVTLENRGKYQGILGASLGL--GNVIGPFIAGAFIMHSTWRGLFWL--ISPLAACS  191
            I      + N+ K+ G+L  S      N  GP+      +   WR +F++  I    A  
Sbjct  155  IGE---LMSNKTKFLGLLIVSAPTIAMNGAGPYFGQRLAIQGNWRWIFYIYIIMSAIAVL  211

Query  192  MVVGVFLIPN----NACKVGVRENVSKIDFYGIIASSIGIIFLLIPIS-GGGSYFQWNSA  246
            +++  +  P+    +  K   R+ ++K+D+ GI     G    L+ +S GG     WNSA
Sbjct  212  LIIIWYHPPSFAQLHGKKARKRDELAKLDWIGIFLVIAGTSLFLLGVSWGGKPNNPWNSA  271

Query  247  MVISMLVIGACSLVAFVFIE-WKVASLPMLPVVFFKNK--VLCALFLQSFLLGAVYQSYL  303
             +I ++  GA SLV F   E +     P++P   FK+    +C L + S ++GA++    
Sbjct  272  KIIGLISSGAGSLVIFALYEVFGKPEQPIIPPALFKDTRGFVCILIISS-IMGAMHLCLT  330

Query  304  YYLPLYYQNARG-----WSPIVSAAMTAPMVGCQALASIASGQYISRTKRYGEVIWAGFG  358
               P    N  G     W      + TA       +  + +  ++ R  R+  ++ A   
Sbjct  331  IIYPQQVINIFGSSLKNWEETAWMSATASFGTGAGVMILGNLFHLIRHIRWQILVGA---  387

Query  359  LW-TLGAGLMLLFNSHTHRAVIVVVVAITGIGIGWTFQPTLIAFQAHCTKSHR----AVV  413
            LW T   G M   N   ++   + +   +G  + W    T++  Q   T        AVV
Sbjct  388  LWLTAFLGAMSSIN-RDNKNAAIALSFFSGFVVAWAQDITMLLVQFITTDEDLGVAFAVV  446

Query  414  ISNRNFFRCLGGACGLAVSAAILQATLRSNLPNGY-RYLAHSTYSLPPQSDISASDWSQI  472
             + R F              +I  A   S   N Y + +A    S    +D   + +  +
Sbjct  447  AAARPFA------------GSIFTAAFISLYSNQYPKEIASHLSSALRGTDFPQASFPSL  494

Query  473  LDAYAKASR  481
            L+A AK+ R
Sbjct  495  LEA-AKSGR  502



Lambda      K        H        a         alpha
   0.325    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00011543

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            109     8e-27
CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TR...  82.8    3e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 109 bits (274),  Expect = 8e-27, Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 136/399 (34%), Gaps = 60/399 (15%)

Query  30   LAVSLLITFVDQNGISVTLP-TIAKDLNA-ENTISWAGTSSLIANTMFSVLYGRLSDIFG  87
            L ++  +  + ++ +   LP  +A+DL      I    T   +   +   L GRLSD FG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  88   RKIVYLSALALLCIADLLCGLSQNAAMFYVFRGLAGIAGGGVGSLTMIIVSDIVTLENRG  147
            R+ V L  L L  +  LL   + +  +  V R L G+  G +    + +++D    E RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  148  KYQGILGASLGLGNVIGPFIAGAFIMHSTWRGLFWLISPLAACSMVVGVFLIPNNACKVG  207
            +  G++ A  GLG  +GP + G       WR  F +++ L+  + V+ +   P       
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE----  176

Query  208  VRENVSKIDFYGIIASSIGIIFLLIPISGGGSYFQWNSAMVISMLVIGACSLVAFVFIEW  267
                                                      S     A      + + W
Sbjct  177  ------------------------------------------SKRPKPAEEARLSLIVAW  194

Query  268  KVASLPMLPVVFFKNKVLCALFLQSFLLGAVYQSYLYYLPLYYQNARGWSPIVSAAMTAP  327
            K            ++ VL  L     LL       L      YQ   G S +++  +   
Sbjct  195  K---------ALLRDPVLWLLLA--LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGL  243

Query  328  MVGCQALASIASGQYISRTKRYGEVIWAGFGLWTLGAGLMLLFNSHTHRAVIVVVVAITG  387
                 A+  +  G+   R  R   ++ A   L     GL+LL  + +    +++ + + G
Sbjct  244  GGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLS-SLWLLLALLLLG  302

Query  388  IGIGWTFQPTLIAFQAHCTKSHRAVVISNRNFFRCLGGA  426
             G G  F            K  R       N    LGGA
Sbjct  303  FGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGA  341


>CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12).  
This family consists of several fungal specific trichothecene 
efflux pump proteins. Many of the genes involved in trichothecene 
toxin biosynthesis in Fusarium sporotrichioides are 
present within a gene cluster.It has been suggested that TRI12 
may play a role in F. sporotrichioides self-protection against 
trichothecenes.
Length=598

 Score = 82.8 bits (204),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 111/489 (23%), Positives = 200/489 (41%), Gaps = 56/489 (11%)

Query  22   QLLVVFAGLAVSLLITFVDQNGISVTLPTIAKDLNAENTISWAGTSSLIANTMFSVLYGR  81
            +++  FA  ++++  T+      +  LP I +D+          T   +   +  ++ GR
Sbjct  41   RIIASFAAFSLNVCATYFVLQASASALPNILQDIGQSENQGLFSTLWTMGQAVSILMMGR  100

Query  82   LSDIFGRKIVYLSALALLCIADLLCGLSQN------AAMFYVFRGLAGIAGGGVGSLTMI  135
            L+D FGR+  ++ A  ++ +   + G + N      AAM      L G+A G  G+  + 
Sbjct  101  LTDRFGRR-PFVIATHIIGLVGAIVGCTANKFNTLLAAM-----TLLGVAAGPAGASPLF  154

Query  136  IVSDIVTLENRGKYQGILGASLGL--GNVIGPFIAGAFIMHSTWRGLFWL--ISPLAACS  191
            I      + N+ K+ G+L  S      N  GP+      +   WR +F++  I    A  
Sbjct  155  IGE---LMSNKTKFLGLLIVSAPTIAMNGAGPYFGQRLAIQGNWRWIFYIYIIMSAIAVL  211

Query  192  MVVGVFLIPN----NACKVGVRENVSKIDFYGIIASSIGIIFLLIPIS-GGGSYFQWNSA  246
            +++  +  P+    +  K   R+ ++K+D+ GI     G    L+ +S GG     WNSA
Sbjct  212  LIIIWYHPPSFAQLHGKKARKRDELAKLDWIGIFLVIAGTSLFLLGVSWGGKPNNPWNSA  271

Query  247  MVISMLVIGACSLVAFVFIE-WKVASLPMLPVVFFKNK--VLCALFLQSFLLGAVYQSYL  303
             +I ++  GA SLV F   E +     P++P   FK+    +C L + S ++GA++    
Sbjct  272  KIIGLISSGAGSLVIFALYEVFGKPEQPIIPPALFKDTRGFVCILIISS-IMGAMHLCLT  330

Query  304  YYLPLYYQNARG-----WSPIVSAAMTAPMVGCQALASIASGQYISRTKRYGEVIWAGFG  358
               P    N  G     W      + TA       +  + +  ++ R  R+  ++ A   
Sbjct  331  IIYPQQVINIFGSSLKNWEETAWMSATASFGTGAGVMILGNLFHLIRHIRWQILVGA---  387

Query  359  LW-TLGAGLMLLFNSHTHRAVIVVVVAITGIGIGWTFQPTLIAFQAHCTKSHR----AVV  413
            LW T   G M   N   ++   + +   +G  + W    T++  Q   T        AVV
Sbjct  388  LWLTAFLGAMSSIN-RDNKNAAIALSFFSGFVVAWAQDITMLLVQFITTDEDLGVAFAVV  446

Query  414  ISNRNFFRCLGGACGLAVSAAILQATLRSNLPNGY-RYLAHSTYSLPPQSDISASDWSQI  472
             + R F              +I  A   S   N Y + +A    S    +D   + +  +
Sbjct  447  AAARPFA------------GSIFTAAFISLYSNQYPKEIASHLSSALRGTDFPQASFPSL  494

Query  473  LDAYAKASR  481
            L+A AK+ R
Sbjct  495  LEA-AKSGR  502



Lambda      K        H        a         alpha
   0.325    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00017763

Length=404


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00017762

Length=404


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00011545

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            109     8e-27
CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TR...  82.8    3e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 109 bits (274),  Expect = 8e-27, Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 136/399 (34%), Gaps = 60/399 (15%)

Query  30   LAVSLLITFVDQNGISVTLP-TIAKDLNA-ENTISWAGTSSLIANTMFSVLYGRLSDIFG  87
            L ++  +  + ++ +   LP  +A+DL      I    T   +   +   L GRLSD FG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  88   RKIVYLSALALLCIADLLCGLSQNAAMFYVFRGLAGIAGGGVGSLTMIIVSDIVTLENRG  147
            R+ V L  L L  +  LL   + +  +  V R L G+  G +    + +++D    E RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  148  KYQGILGASLGLGNVIGPFIAGAFIMHSTWRGLFWLISPLAACSMVVGVFLIPNNACKVG  207
            +  G++ A  GLG  +GP + G       WR  F +++ L+  + V+ +   P       
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE----  176

Query  208  VRENVSKIDFYGIIASSIGIIFLLIPISGGGSYFQWNSAMVISMLVIGACSLVAFVFIEW  267
                                                      S     A      + + W
Sbjct  177  ------------------------------------------SKRPKPAEEARLSLIVAW  194

Query  268  KVASLPMLPVVFFKNKVLCALFLQSFLLGAVYQSYLYYLPLYYQNARGWSPIVSAAMTAP  327
            K            ++ VL  L     LL       L      YQ   G S +++  +   
Sbjct  195  K---------ALLRDPVLWLLLA--LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGL  243

Query  328  MVGCQALASIASGQYISRTKRYGEVIWAGFGLWTLGAGLMLLFNSHTHRAVIVVVVAITG  387
                 A+  +  G+   R  R   ++ A   L     GL+LL  + +    +++ + + G
Sbjct  244  GGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLS-SLWLLLALLLLG  302

Query  388  IGIGWTFQPTLIAFQAHCTKSHRAVVISNRNFFRCLGGA  426
             G G  F            K  R       N    LGGA
Sbjct  303  FGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGA  341


>CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12).  
This family consists of several fungal specific trichothecene 
efflux pump proteins. Many of the genes involved in trichothecene 
toxin biosynthesis in Fusarium sporotrichioides are 
present within a gene cluster.It has been suggested that TRI12 
may play a role in F. sporotrichioides self-protection against 
trichothecenes.
Length=598

 Score = 82.8 bits (204),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 111/489 (23%), Positives = 200/489 (41%), Gaps = 56/489 (11%)

Query  22   QLLVVFAGLAVSLLITFVDQNGISVTLPTIAKDLNAENTISWAGTSSLIANTMFSVLYGR  81
            +++  FA  ++++  T+      +  LP I +D+          T   +   +  ++ GR
Sbjct  41   RIIASFAAFSLNVCATYFVLQASASALPNILQDIGQSENQGLFSTLWTMGQAVSILMMGR  100

Query  82   LSDIFGRKIVYLSALALLCIADLLCGLSQN------AAMFYVFRGLAGIAGGGVGSLTMI  135
            L+D FGR+  ++ A  ++ +   + G + N      AAM      L G+A G  G+  + 
Sbjct  101  LTDRFGRR-PFVIATHIIGLVGAIVGCTANKFNTLLAAM-----TLLGVAAGPAGASPLF  154

Query  136  IVSDIVTLENRGKYQGILGASLGL--GNVIGPFIAGAFIMHSTWRGLFWL--ISPLAACS  191
            I      + N+ K+ G+L  S      N  GP+      +   WR +F++  I    A  
Sbjct  155  IGE---LMSNKTKFLGLLIVSAPTIAMNGAGPYFGQRLAIQGNWRWIFYIYIIMSAIAVL  211

Query  192  MVVGVFLIPN----NACKVGVRENVSKIDFYGIIASSIGIIFLLIPIS-GGGSYFQWNSA  246
            +++  +  P+    +  K   R+ ++K+D+ GI     G    L+ +S GG     WNSA
Sbjct  212  LIIIWYHPPSFAQLHGKKARKRDELAKLDWIGIFLVIAGTSLFLLGVSWGGKPNNPWNSA  271

Query  247  MVISMLVIGACSLVAFVFIE-WKVASLPMLPVVFFKNK--VLCALFLQSFLLGAVYQSYL  303
             +I ++  GA SLV F   E +     P++P   FK+    +C L + S ++GA++    
Sbjct  272  KIIGLISSGAGSLVIFALYEVFGKPEQPIIPPALFKDTRGFVCILIISS-IMGAMHLCLT  330

Query  304  YYLPLYYQNARG-----WSPIVSAAMTAPMVGCQALASIASGQYISRTKRYGEVIWAGFG  358
               P    N  G     W      + TA       +  + +  ++ R  R+  ++ A   
Sbjct  331  IIYPQQVINIFGSSLKNWEETAWMSATASFGTGAGVMILGNLFHLIRHIRWQILVGA---  387

Query  359  LW-TLGAGLMLLFNSHTHRAVIVVVVAITGIGIGWTFQPTLIAFQAHCTKSHR----AVV  413
            LW T   G M   N   ++   + +   +G  + W    T++  Q   T        AVV
Sbjct  388  LWLTAFLGAMSSIN-RDNKNAAIALSFFSGFVVAWAQDITMLLVQFITTDEDLGVAFAVV  446

Query  414  ISNRNFFRCLGGACGLAVSAAILQATLRSNLPNGY-RYLAHSTYSLPPQSDISASDWSQI  472
             + R F              +I  A   S   N Y + +A    S    +D   + +  +
Sbjct  447  AAARPFA------------GSIFTAAFISLYSNQYPKEIASHLSSALRGTDFPQASFPSL  494

Query  473  LDAYAKASR  481
            L+A AK+ R
Sbjct  495  LEA-AKSGR  502



Lambda      K        H        a         alpha
   0.325    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00011544

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            109     8e-27
CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TR...  82.8    3e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 109 bits (274),  Expect = 8e-27, Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 136/399 (34%), Gaps = 60/399 (15%)

Query  30   LAVSLLITFVDQNGISVTLP-TIAKDLNA-ENTISWAGTSSLIANTMFSVLYGRLSDIFG  87
            L ++  +  + ++ +   LP  +A+DL      I    T   +   +   L GRLSD FG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  88   RKIVYLSALALLCIADLLCGLSQNAAMFYVFRGLAGIAGGGVGSLTMIIVSDIVTLENRG  147
            R+ V L  L L  +  LL   + +  +  V R L G+  G +    + +++D    E RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  148  KYQGILGASLGLGNVIGPFIAGAFIMHSTWRGLFWLISPLAACSMVVGVFLIPNNACKVG  207
            +  G++ A  GLG  +GP + G       WR  F +++ L+  + V+ +   P       
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE----  176

Query  208  VRENVSKIDFYGIIASSIGIIFLLIPISGGGSYFQWNSAMVISMLVIGACSLVAFVFIEW  267
                                                      S     A      + + W
Sbjct  177  ------------------------------------------SKRPKPAEEARLSLIVAW  194

Query  268  KVASLPMLPVVFFKNKVLCALFLQSFLLGAVYQSYLYYLPLYYQNARGWSPIVSAAMTAP  327
            K            ++ VL  L     LL       L      YQ   G S +++  +   
Sbjct  195  K---------ALLRDPVLWLLLA--LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGL  243

Query  328  MVGCQALASIASGQYISRTKRYGEVIWAGFGLWTLGAGLMLLFNSHTHRAVIVVVVAITG  387
                 A+  +  G+   R  R   ++ A   L     GL+LL  + +    +++ + + G
Sbjct  244  GGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLS-SLWLLLALLLLG  302

Query  388  IGIGWTFQPTLIAFQAHCTKSHRAVVISNRNFFRCLGGA  426
             G G  F            K  R       N    LGGA
Sbjct  303  FGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGA  341


>CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12).  
This family consists of several fungal specific trichothecene 
efflux pump proteins. Many of the genes involved in trichothecene 
toxin biosynthesis in Fusarium sporotrichioides are 
present within a gene cluster.It has been suggested that TRI12 
may play a role in F. sporotrichioides self-protection against 
trichothecenes.
Length=598

 Score = 82.8 bits (204),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 111/489 (23%), Positives = 200/489 (41%), Gaps = 56/489 (11%)

Query  22   QLLVVFAGLAVSLLITFVDQNGISVTLPTIAKDLNAENTISWAGTSSLIANTMFSVLYGR  81
            +++  FA  ++++  T+      +  LP I +D+          T   +   +  ++ GR
Sbjct  41   RIIASFAAFSLNVCATYFVLQASASALPNILQDIGQSENQGLFSTLWTMGQAVSILMMGR  100

Query  82   LSDIFGRKIVYLSALALLCIADLLCGLSQN------AAMFYVFRGLAGIAGGGVGSLTMI  135
            L+D FGR+  ++ A  ++ +   + G + N      AAM      L G+A G  G+  + 
Sbjct  101  LTDRFGRR-PFVIATHIIGLVGAIVGCTANKFNTLLAAM-----TLLGVAAGPAGASPLF  154

Query  136  IVSDIVTLENRGKYQGILGASLGL--GNVIGPFIAGAFIMHSTWRGLFWL--ISPLAACS  191
            I      + N+ K+ G+L  S      N  GP+      +   WR +F++  I    A  
Sbjct  155  IGE---LMSNKTKFLGLLIVSAPTIAMNGAGPYFGQRLAIQGNWRWIFYIYIIMSAIAVL  211

Query  192  MVVGVFLIPN----NACKVGVRENVSKIDFYGIIASSIGIIFLLIPIS-GGGSYFQWNSA  246
            +++  +  P+    +  K   R+ ++K+D+ GI     G    L+ +S GG     WNSA
Sbjct  212  LIIIWYHPPSFAQLHGKKARKRDELAKLDWIGIFLVIAGTSLFLLGVSWGGKPNNPWNSA  271

Query  247  MVISMLVIGACSLVAFVFIE-WKVASLPMLPVVFFKNK--VLCALFLQSFLLGAVYQSYL  303
             +I ++  GA SLV F   E +     P++P   FK+    +C L + S ++GA++    
Sbjct  272  KIIGLISSGAGSLVIFALYEVFGKPEQPIIPPALFKDTRGFVCILIISS-IMGAMHLCLT  330

Query  304  YYLPLYYQNARG-----WSPIVSAAMTAPMVGCQALASIASGQYISRTKRYGEVIWAGFG  358
               P    N  G     W      + TA       +  + +  ++ R  R+  ++ A   
Sbjct  331  IIYPQQVINIFGSSLKNWEETAWMSATASFGTGAGVMILGNLFHLIRHIRWQILVGA---  387

Query  359  LW-TLGAGLMLLFNSHTHRAVIVVVVAITGIGIGWTFQPTLIAFQAHCTKSHR----AVV  413
            LW T   G M   N   ++   + +   +G  + W    T++  Q   T        AVV
Sbjct  388  LWLTAFLGAMSSIN-RDNKNAAIALSFFSGFVVAWAQDITMLLVQFITTDEDLGVAFAVV  446

Query  414  ISNRNFFRCLGGACGLAVSAAILQATLRSNLPNGY-RYLAHSTYSLPPQSDISASDWSQI  472
             + R F              +I  A   S   N Y + +A    S    +D   + +  +
Sbjct  447  AAARPFA------------GSIFTAAFISLYSNQYPKEIASHLSSALRGTDFPQASFPSL  494

Query  473  LDAYAKASR  481
            L+A AK+ R
Sbjct  495  LEA-AKSGR  502



Lambda      K        H        a         alpha
   0.325    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00011546

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462178 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-ph...  160     4e-49
CDD:395967 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-ph...  150     4e-45


>CDD:462178 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate 
dehydrogenase C-terminus.  NAD-dependent glycerol-3-phosphate 
dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone 
phosphate and L-glycerol-3-phosphate. This family 
represents the C-terminal substrate-binding domain.
Length=142

 Score = 160 bits (408),  Expect = 4e-49, Method: Composition-based stats.
 Identities = 56/138 (41%), Positives = 79/138 (57%), Gaps = 11/138 (8%)

Query  245  DVAGVALCGALKNIVALAAGFVAGKGWGESSKAAIIRIGMMEMIRFGRFWFPDSVNQKTF  304
            DV GV L GALKN++A+AAG   G G G+++KAA+I  G+ EMIR G+         +TF
Sbjct  1    DVIGVELGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMIRLGKALGA---KPETF  57

Query  305  TEESAGVADLIASCSAG--RNFRSAKHSVEKGVSVDELEQSELNGQKLQGTSTTRAVCDF  362
                AG+ DLI +C++G  RN R  +    KG S++E E+    GQ  +G  T +AV + 
Sbjct  58   F-GLAGLGDLIVTCTSGLSRNRRFGEALG-KGKSLEEAEKEL--GQVAEGVYTAKAVYEL  113

Query  363  LSTHGKLDDFPLFNAVNR  380
                G   + P+F AV R
Sbjct  114  AKKLGV--EMPIFEAVYR  129


>CDD:395967 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate 
dehydrogenase N-terminus.  NAD-dependent glycerol-3-phosphate 
dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone 
phosphate and L-glycerol-3-phosphate. This family 
represents the N-terminal NAD-binding domain.
Length=158

 Score = 150 bits (382),  Expect = 4e-45, Method: Composition-based stats.
 Identities = 63/174 (36%), Positives = 85/174 (49%), Gaps = 31/174 (18%)

Query  10   GSTIAKILAENTREHPDVFEEEVQMWVFEEEVTIPKDSPHREALGDQTHKLTDIINRVHE  69
            G+ +AK+LA+N          EV++W  +EE                   L + IN  HE
Sbjct  11   GTALAKVLADNG--------HEVRLWGRDEE-------------------LIEEINTTHE  43

Query  70   NVKYLPGTALPSNVVANPDLRAAVKDATILVFNLPHQFIDKTLEQMKGHHLPYARAVSCV  129
            NV+YLPG  LP N+ A  DL  A+K A I+V  +P Q + + L+Q+KG   P A  VS  
Sbjct  44   NVRYLPGIKLPENLKATTDLAEALKGADIIVIVVPSQALREVLKQLKGLLKPDAILVSLS  103

Query  130  KGVEVANGRVTLFSELIMEQLGIY--CGSLSGANIAPEVAAEEFCETTIGYSPP  181
            KG+E    +  L SE+I E+LGI      LSG + A EVA      T I     
Sbjct  104  KGIEPGTLK--LLSEVIEEELGIQPPIAVLSGPSHAEEVAQGLPTATVIASKDE  155



Lambda      K        H        a         alpha
   0.318    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00017764

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            95.9    3e-22
CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TR...  80.5    1e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 95.9 bits (239),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 136/399 (34%), Gaps = 60/399 (15%)

Query  30   LAVSLLITFVDQNGISVTLP-TIAKDLNA-ENTISWAGTSSLIANTMFSVLYGRLSDIFG  87
            L ++  +  + ++ +   LP  +A+DL      I    T   +   +   L GRLSD FG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  88   RKIVYLSALALLCIADLLCGLSQNAAMFYVFRGLAGIAGGGVGSLTMIIVSDIVTLENRG  147
            R+ V L  L L  +  LL   + +  +  V R L G+  G +    + +++D    E RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  148  KYQGILGASLGLGNVIGPFIAGAFIMHSTWRGLFWLISPLAACSMVVGVFLIPNNACKVG  207
            +  G++ A  GLG  +GP + G       WR  F +++ L+  + V+ +   P       
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE----  176

Query  208  VRENVSKIDFYGIIASSIGIIFLLIPISGGGSYFQWNSAMVISMLVIGACSLVAFVFIEW  267
                                                      S     A      + + W
Sbjct  177  ------------------------------------------SKRPKPAEEARLSLIVAW  194

Query  268  KVASLPMLPVVFFKNKVLCALFLQSFLLGAVYQSYLYYLPLYYQNARGWSPIVSAAMTAP  327
            K            ++ VL  L     LL       L      YQ   G S +++  +   
Sbjct  195  K---------ALLRDPVLWLLLA--LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGL  243

Query  328  MVGCQALASIASGQYISRTKRYGEVIWAGFGLWTLGAGLMLLFNSHTHRAVIVVVVAITG  387
                 A+  +  G+   R  R   ++ A   L     GL+LL  + +    +++ + + G
Sbjct  244  GGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLS-SLWLLLALLLLG  302

Query  388  IGIGWTFQPTLIAFQAHCTKSHRAVVISNRNFFRCLGGA  426
             G G  F            K  R       N    LGGA
Sbjct  303  FGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGA  341


>CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12).  
This family consists of several fungal specific trichothecene 
efflux pump proteins. Many of the genes involved in trichothecene 
toxin biosynthesis in Fusarium sporotrichioides are 
present within a gene cluster.It has been suggested that TRI12 
may play a role in F. sporotrichioides self-protection against 
trichothecenes.
Length=598

 Score = 80.5 bits (198),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 111/489 (23%), Positives = 200/489 (41%), Gaps = 56/489 (11%)

Query  22   QLLVVFAGLAVSLLITFVDQNGISVTLPTIAKDLNAENTISWAGTSSLIANTMFSVLYGR  81
            +++  FA  ++++  T+      +  LP I +D+          T   +   +  ++ GR
Sbjct  41   RIIASFAAFSLNVCATYFVLQASASALPNILQDIGQSENQGLFSTLWTMGQAVSILMMGR  100

Query  82   LSDIFGRKIVYLSALALLCIADLLCGLSQN------AAMFYVFRGLAGIAGGGVGSLTMI  135
            L+D FGR+  ++ A  ++ +   + G + N      AAM      L G+A G  G+  + 
Sbjct  101  LTDRFGRR-PFVIATHIIGLVGAIVGCTANKFNTLLAAM-----TLLGVAAGPAGASPLF  154

Query  136  IVSDIVTLENRGKYQGILGASLGL--GNVIGPFIAGAFIMHSTWRGLFWL--ISPLAACS  191
            I      + N+ K+ G+L  S      N  GP+      +   WR +F++  I    A  
Sbjct  155  IGE---LMSNKTKFLGLLIVSAPTIAMNGAGPYFGQRLAIQGNWRWIFYIYIIMSAIAVL  211

Query  192  MVVGVFLIPN----NACKVGVRENVSKIDFYGIIASSIGIIFLLIPIS-GGGSYFQWNSA  246
            +++  +  P+    +  K   R+ ++K+D+ GI     G    L+ +S GG     WNSA
Sbjct  212  LIIIWYHPPSFAQLHGKKARKRDELAKLDWIGIFLVIAGTSLFLLGVSWGGKPNNPWNSA  271

Query  247  MVISMLVIGACSLVAFVFIE-WKVASLPMLPVVFFKNK--VLCALFLQSFLLGAVYQSYL  303
             +I ++  GA SLV F   E +     P++P   FK+    +C L + S ++GA++    
Sbjct  272  KIIGLISSGAGSLVIFALYEVFGKPEQPIIPPALFKDTRGFVCILIISS-IMGAMHLCLT  330

Query  304  YYLPLYYQNARG-----WSPIVSAAMTAPMVGCQALASIASGQYISRTKRYGEVIWAGFG  358
               P    N  G     W      + TA       +  + +  ++ R  R+  ++ A   
Sbjct  331  IIYPQQVINIFGSSLKNWEETAWMSATASFGTGAGVMILGNLFHLIRHIRWQILVGA---  387

Query  359  LW-TLGAGLMLLFNSHTHRAVIVVVVAITGIGIGWTFQPTLIAFQAHCTKSHR----AVV  413
            LW T   G M   N   ++   + +   +G  + W    T++  Q   T        AVV
Sbjct  388  LWLTAFLGAMSSIN-RDNKNAAIALSFFSGFVVAWAQDITMLLVQFITTDEDLGVAFAVV  446

Query  414  ISNRNFFRCLGGACGLAVSAAILQATLRSNLPNGY-RYLAHSTYSLPPQSDISASDWSQI  472
             + R F              +I  A   S   N Y + +A    S    +D   + +  +
Sbjct  447  AAARPFA------------GSIFTAAFISLYSNQYPKEIASHLSSALRGTDFPQASFPSL  494

Query  473  LDAYAKASR  481
            L+A AK+ R
Sbjct  495  LEA-AKSGR  502



Lambda      K        H        a         alpha
   0.327    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00011548

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462178 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-ph...  160     4e-49
CDD:395967 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-ph...  150     4e-45


>CDD:462178 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate 
dehydrogenase C-terminus.  NAD-dependent glycerol-3-phosphate 
dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone 
phosphate and L-glycerol-3-phosphate. This family 
represents the C-terminal substrate-binding domain.
Length=142

 Score = 160 bits (408),  Expect = 4e-49, Method: Composition-based stats.
 Identities = 56/138 (41%), Positives = 79/138 (57%), Gaps = 11/138 (8%)

Query  245  DVAGVALCGALKNIVALAAGFVAGKGWGESSKAAIIRIGMMEMIRFGRFWFPDSVNQKTF  304
            DV GV L GALKN++A+AAG   G G G+++KAA+I  G+ EMIR G+         +TF
Sbjct  1    DVIGVELGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMIRLGKALGA---KPETF  57

Query  305  TEESAGVADLIASCSAG--RNFRSAKHSVEKGVSVDELEQSELNGQKLQGTSTTRAVCDF  362
                AG+ DLI +C++G  RN R  +    KG S++E E+    GQ  +G  T +AV + 
Sbjct  58   F-GLAGLGDLIVTCTSGLSRNRRFGEALG-KGKSLEEAEKEL--GQVAEGVYTAKAVYEL  113

Query  363  LSTHGKLDDFPLFNAVNR  380
                G   + P+F AV R
Sbjct  114  AKKLGV--EMPIFEAVYR  129


>CDD:395967 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate 
dehydrogenase N-terminus.  NAD-dependent glycerol-3-phosphate 
dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone 
phosphate and L-glycerol-3-phosphate. This family 
represents the N-terminal NAD-binding domain.
Length=158

 Score = 150 bits (382),  Expect = 4e-45, Method: Composition-based stats.
 Identities = 63/174 (36%), Positives = 85/174 (49%), Gaps = 31/174 (18%)

Query  10   GSTIAKILAENTREHPDVFEEEVQMWVFEEEVTIPKDSPHREALGDQTHKLTDIINRVHE  69
            G+ +AK+LA+N          EV++W  +EE                   L + IN  HE
Sbjct  11   GTALAKVLADNG--------HEVRLWGRDEE-------------------LIEEINTTHE  43

Query  70   NVKYLPGTALPSNVVANPDLRAAVKDATILVFNLPHQFIDKTLEQMKGHHLPYARAVSCV  129
            NV+YLPG  LP N+ A  DL  A+K A I+V  +P Q + + L+Q+KG   P A  VS  
Sbjct  44   NVRYLPGIKLPENLKATTDLAEALKGADIIVIVVPSQALREVLKQLKGLLKPDAILVSLS  103

Query  130  KGVEVANGRVTLFSELIMEQLGIY--CGSLSGANIAPEVAAEEFCETTIGYSPP  181
            KG+E    +  L SE+I E+LGI      LSG + A EVA      T I     
Sbjct  104  KGIEPGTLK--LLSEVIEEELGIQPPIAVLSGPSHAEEVAQGLPTATVIASKDE  155



Lambda      K        H        a         alpha
   0.318    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00011547

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462178 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-ph...  160     4e-49
CDD:395967 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-ph...  150     4e-45


>CDD:462178 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate 
dehydrogenase C-terminus.  NAD-dependent glycerol-3-phosphate 
dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone 
phosphate and L-glycerol-3-phosphate. This family 
represents the C-terminal substrate-binding domain.
Length=142

 Score = 160 bits (408),  Expect = 4e-49, Method: Composition-based stats.
 Identities = 56/138 (41%), Positives = 79/138 (57%), Gaps = 11/138 (8%)

Query  245  DVAGVALCGALKNIVALAAGFVAGKGWGESSKAAIIRIGMMEMIRFGRFWFPDSVNQKTF  304
            DV GV L GALKN++A+AAG   G G G+++KAA+I  G+ EMIR G+         +TF
Sbjct  1    DVIGVELGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMIRLGKALGA---KPETF  57

Query  305  TEESAGVADLIASCSAG--RNFRSAKHSVEKGVSVDELEQSELNGQKLQGTSTTRAVCDF  362
                AG+ DLI +C++G  RN R  +    KG S++E E+    GQ  +G  T +AV + 
Sbjct  58   F-GLAGLGDLIVTCTSGLSRNRRFGEALG-KGKSLEEAEKEL--GQVAEGVYTAKAVYEL  113

Query  363  LSTHGKLDDFPLFNAVNR  380
                G   + P+F AV R
Sbjct  114  AKKLGV--EMPIFEAVYR  129


>CDD:395967 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate 
dehydrogenase N-terminus.  NAD-dependent glycerol-3-phosphate 
dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone 
phosphate and L-glycerol-3-phosphate. This family 
represents the N-terminal NAD-binding domain.
Length=158

 Score = 150 bits (382),  Expect = 4e-45, Method: Composition-based stats.
 Identities = 63/174 (36%), Positives = 85/174 (49%), Gaps = 31/174 (18%)

Query  10   GSTIAKILAENTREHPDVFEEEVQMWVFEEEVTIPKDSPHREALGDQTHKLTDIINRVHE  69
            G+ +AK+LA+N          EV++W  +EE                   L + IN  HE
Sbjct  11   GTALAKVLADNG--------HEVRLWGRDEE-------------------LIEEINTTHE  43

Query  70   NVKYLPGTALPSNVVANPDLRAAVKDATILVFNLPHQFIDKTLEQMKGHHLPYARAVSCV  129
            NV+YLPG  LP N+ A  DL  A+K A I+V  +P Q + + L+Q+KG   P A  VS  
Sbjct  44   NVRYLPGIKLPENLKATTDLAEALKGADIIVIVVPSQALREVLKQLKGLLKPDAILVSLS  103

Query  130  KGVEVANGRVTLFSELIMEQLGIY--CGSLSGANIAPEVAAEEFCETTIGYSPP  181
            KG+E    +  L SE+I E+LGI      LSG + A EVA      T I     
Sbjct  104  KGIEPGTLK--LLSEVIEEELGIQPPIAVLSGPSHAEEVAQGLPTATVIASKDE  155



Lambda      K        H        a         alpha
   0.318    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00017766

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            109     8e-27
CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TR...  82.8    3e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 109 bits (274),  Expect = 8e-27, Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 136/399 (34%), Gaps = 60/399 (15%)

Query  30   LAVSLLITFVDQNGISVTLP-TIAKDLNA-ENTISWAGTSSLIANTMFSVLYGRLSDIFG  87
            L ++  +  + ++ +   LP  +A+DL      I    T   +   +   L GRLSD FG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  88   RKIVYLSALALLCIADLLCGLSQNAAMFYVFRGLAGIAGGGVGSLTMIIVSDIVTLENRG  147
            R+ V L  L L  +  LL   + +  +  V R L G+  G +    + +++D    E RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  148  KYQGILGASLGLGNVIGPFIAGAFIMHSTWRGLFWLISPLAACSMVVGVFLIPNNACKVG  207
            +  G++ A  GLG  +GP + G       WR  F +++ L+  + V+ +   P       
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE----  176

Query  208  VRENVSKIDFYGIIASSIGIIFLLIPISGGGSYFQWNSAMVISMLVIGACSLVAFVFIEW  267
                                                      S     A      + + W
Sbjct  177  ------------------------------------------SKRPKPAEEARLSLIVAW  194

Query  268  KVASLPMLPVVFFKNKVLCALFLQSFLLGAVYQSYLYYLPLYYQNARGWSPIVSAAMTAP  327
            K            ++ VL  L     LL       L      YQ   G S +++  +   
Sbjct  195  K---------ALLRDPVLWLLLA--LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGL  243

Query  328  MVGCQALASIASGQYISRTKRYGEVIWAGFGLWTLGAGLMLLFNSHTHRAVIVVVVAITG  387
                 A+  +  G+   R  R   ++ A   L     GL+LL  + +    +++ + + G
Sbjct  244  GGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLS-SLWLLLALLLLG  302

Query  388  IGIGWTFQPTLIAFQAHCTKSHRAVVISNRNFFRCLGGA  426
             G G  F            K  R       N    LGGA
Sbjct  303  FGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGA  341


>CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12).  
This family consists of several fungal specific trichothecene 
efflux pump proteins. Many of the genes involved in trichothecene 
toxin biosynthesis in Fusarium sporotrichioides are 
present within a gene cluster.It has been suggested that TRI12 
may play a role in F. sporotrichioides self-protection against 
trichothecenes.
Length=598

 Score = 82.8 bits (204),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 111/489 (23%), Positives = 200/489 (41%), Gaps = 56/489 (11%)

Query  22   QLLVVFAGLAVSLLITFVDQNGISVTLPTIAKDLNAENTISWAGTSSLIANTMFSVLYGR  81
            +++  FA  ++++  T+      +  LP I +D+          T   +   +  ++ GR
Sbjct  41   RIIASFAAFSLNVCATYFVLQASASALPNILQDIGQSENQGLFSTLWTMGQAVSILMMGR  100

Query  82   LSDIFGRKIVYLSALALLCIADLLCGLSQN------AAMFYVFRGLAGIAGGGVGSLTMI  135
            L+D FGR+  ++ A  ++ +   + G + N      AAM      L G+A G  G+  + 
Sbjct  101  LTDRFGRR-PFVIATHIIGLVGAIVGCTANKFNTLLAAM-----TLLGVAAGPAGASPLF  154

Query  136  IVSDIVTLENRGKYQGILGASLGL--GNVIGPFIAGAFIMHSTWRGLFWL--ISPLAACS  191
            I      + N+ K+ G+L  S      N  GP+      +   WR +F++  I    A  
Sbjct  155  IGE---LMSNKTKFLGLLIVSAPTIAMNGAGPYFGQRLAIQGNWRWIFYIYIIMSAIAVL  211

Query  192  MVVGVFLIPN----NACKVGVRENVSKIDFYGIIASSIGIIFLLIPIS-GGGSYFQWNSA  246
            +++  +  P+    +  K   R+ ++K+D+ GI     G    L+ +S GG     WNSA
Sbjct  212  LIIIWYHPPSFAQLHGKKARKRDELAKLDWIGIFLVIAGTSLFLLGVSWGGKPNNPWNSA  271

Query  247  MVISMLVIGACSLVAFVFIE-WKVASLPMLPVVFFKNK--VLCALFLQSFLLGAVYQSYL  303
             +I ++  GA SLV F   E +     P++P   FK+    +C L + S ++GA++    
Sbjct  272  KIIGLISSGAGSLVIFALYEVFGKPEQPIIPPALFKDTRGFVCILIISS-IMGAMHLCLT  330

Query  304  YYLPLYYQNARG-----WSPIVSAAMTAPMVGCQALASIASGQYISRTKRYGEVIWAGFG  358
               P    N  G     W      + TA       +  + +  ++ R  R+  ++ A   
Sbjct  331  IIYPQQVINIFGSSLKNWEETAWMSATASFGTGAGVMILGNLFHLIRHIRWQILVGA---  387

Query  359  LW-TLGAGLMLLFNSHTHRAVIVVVVAITGIGIGWTFQPTLIAFQAHCTKSHR----AVV  413
            LW T   G M   N   ++   + +   +G  + W    T++  Q   T        AVV
Sbjct  388  LWLTAFLGAMSSIN-RDNKNAAIALSFFSGFVVAWAQDITMLLVQFITTDEDLGVAFAVV  446

Query  414  ISNRNFFRCLGGACGLAVSAAILQATLRSNLPNGY-RYLAHSTYSLPPQSDISASDWSQI  472
             + R F              +I  A   S   N Y + +A    S    +D   + +  +
Sbjct  447  AAARPFA------------GSIFTAAFISLYSNQYPKEIASHLSSALRGTDFPQASFPSL  494

Query  473  LDAYAKASR  481
            L+A AK+ R
Sbjct  495  LEA-AKSGR  502



Lambda      K        H        a         alpha
   0.325    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00017765

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            109     8e-27
CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TR...  82.8    3e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 109 bits (274),  Expect = 8e-27, Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 136/399 (34%), Gaps = 60/399 (15%)

Query  30   LAVSLLITFVDQNGISVTLP-TIAKDLNA-ENTISWAGTSSLIANTMFSVLYGRLSDIFG  87
            L ++  +  + ++ +   LP  +A+DL      I    T   +   +   L GRLSD FG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  88   RKIVYLSALALLCIADLLCGLSQNAAMFYVFRGLAGIAGGGVGSLTMIIVSDIVTLENRG  147
            R+ V L  L L  +  LL   + +  +  V R L G+  G +    + +++D    E RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  148  KYQGILGASLGLGNVIGPFIAGAFIMHSTWRGLFWLISPLAACSMVVGVFLIPNNACKVG  207
            +  G++ A  GLG  +GP + G       WR  F +++ L+  + V+ +   P       
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE----  176

Query  208  VRENVSKIDFYGIIASSIGIIFLLIPISGGGSYFQWNSAMVISMLVIGACSLVAFVFIEW  267
                                                      S     A      + + W
Sbjct  177  ------------------------------------------SKRPKPAEEARLSLIVAW  194

Query  268  KVASLPMLPVVFFKNKVLCALFLQSFLLGAVYQSYLYYLPLYYQNARGWSPIVSAAMTAP  327
            K            ++ VL  L     LL       L      YQ   G S +++  +   
Sbjct  195  K---------ALLRDPVLWLLLA--LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGL  243

Query  328  MVGCQALASIASGQYISRTKRYGEVIWAGFGLWTLGAGLMLLFNSHTHRAVIVVVVAITG  387
                 A+  +  G+   R  R   ++ A   L     GL+LL  + +    +++ + + G
Sbjct  244  GGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLS-SLWLLLALLLLG  302

Query  388  IGIGWTFQPTLIAFQAHCTKSHRAVVISNRNFFRCLGGA  426
             G G  F            K  R       N    LGGA
Sbjct  303  FGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGA  341


>CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12).  
This family consists of several fungal specific trichothecene 
efflux pump proteins. Many of the genes involved in trichothecene 
toxin biosynthesis in Fusarium sporotrichioides are 
present within a gene cluster.It has been suggested that TRI12 
may play a role in F. sporotrichioides self-protection against 
trichothecenes.
Length=598

 Score = 82.8 bits (204),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 111/489 (23%), Positives = 200/489 (41%), Gaps = 56/489 (11%)

Query  22   QLLVVFAGLAVSLLITFVDQNGISVTLPTIAKDLNAENTISWAGTSSLIANTMFSVLYGR  81
            +++  FA  ++++  T+      +  LP I +D+          T   +   +  ++ GR
Sbjct  41   RIIASFAAFSLNVCATYFVLQASASALPNILQDIGQSENQGLFSTLWTMGQAVSILMMGR  100

Query  82   LSDIFGRKIVYLSALALLCIADLLCGLSQN------AAMFYVFRGLAGIAGGGVGSLTMI  135
            L+D FGR+  ++ A  ++ +   + G + N      AAM      L G+A G  G+  + 
Sbjct  101  LTDRFGRR-PFVIATHIIGLVGAIVGCTANKFNTLLAAM-----TLLGVAAGPAGASPLF  154

Query  136  IVSDIVTLENRGKYQGILGASLGL--GNVIGPFIAGAFIMHSTWRGLFWL--ISPLAACS  191
            I      + N+ K+ G+L  S      N  GP+      +   WR +F++  I    A  
Sbjct  155  IGE---LMSNKTKFLGLLIVSAPTIAMNGAGPYFGQRLAIQGNWRWIFYIYIIMSAIAVL  211

Query  192  MVVGVFLIPN----NACKVGVRENVSKIDFYGIIASSIGIIFLLIPIS-GGGSYFQWNSA  246
            +++  +  P+    +  K   R+ ++K+D+ GI     G    L+ +S GG     WNSA
Sbjct  212  LIIIWYHPPSFAQLHGKKARKRDELAKLDWIGIFLVIAGTSLFLLGVSWGGKPNNPWNSA  271

Query  247  MVISMLVIGACSLVAFVFIE-WKVASLPMLPVVFFKNK--VLCALFLQSFLLGAVYQSYL  303
             +I ++  GA SLV F   E +     P++P   FK+    +C L + S ++GA++    
Sbjct  272  KIIGLISSGAGSLVIFALYEVFGKPEQPIIPPALFKDTRGFVCILIISS-IMGAMHLCLT  330

Query  304  YYLPLYYQNARG-----WSPIVSAAMTAPMVGCQALASIASGQYISRTKRYGEVIWAGFG  358
               P    N  G     W      + TA       +  + +  ++ R  R+  ++ A   
Sbjct  331  IIYPQQVINIFGSSLKNWEETAWMSATASFGTGAGVMILGNLFHLIRHIRWQILVGA---  387

Query  359  LW-TLGAGLMLLFNSHTHRAVIVVVVAITGIGIGWTFQPTLIAFQAHCTKSHR----AVV  413
            LW T   G M   N   ++   + +   +G  + W    T++  Q   T        AVV
Sbjct  388  LWLTAFLGAMSSIN-RDNKNAAIALSFFSGFVVAWAQDITMLLVQFITTDEDLGVAFAVV  446

Query  414  ISNRNFFRCLGGACGLAVSAAILQATLRSNLPNGY-RYLAHSTYSLPPQSDISASDWSQI  472
             + R F              +I  A   S   N Y + +A    S    +D   + +  +
Sbjct  447  AAARPFA------------GSIFTAAFISLYSNQYPKEIASHLSSALRGTDFPQASFPSL  494

Query  473  LDAYAKASR  481
            L+A AK+ R
Sbjct  495  LEA-AKSGR  502



Lambda      K        H        a         alpha
   0.325    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00011550

Length=739
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466049 pfam19343, DUF5923, Family of unknown function (DUF592...  143     2e-36


>CDD:466049 pfam19343, DUF5923, Family of unknown function (DUF5923).  This 
entry represents a family of uncharacterized fungal proteins. 
These proteins often also contain a C-terminal pfam14613 
domain.
Length=630

 Score = 143 bits (364),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 135/576 (23%), Positives = 220/576 (38%), Gaps = 177/576 (31%)

Query  25   QKLHSYQMLRALSEGYMPSTDQTISNLRTLLASDILNPRNQDIGSVGRQLARDCRLWIEI  84
            +KL  Y +++A   G +PS  Q    L   LAS  L+     +   GR+L +D R  IE 
Sbjct  21   RKLQLYGIIQAFRNGKLPSNKQIDVALNYALASSPLDS--SKLSPEGRKLVQDLRDVIET  78

Query  85   FIEFLREKNGDDQLQEFLWHLSRSRASIDTSEVSRRASQVKARQDTKAAYDSLRTVGSLL  144
                + EKN D+ LQ F+WH                  + KA+QD + A + LRT+G+L+
Sbjct  79   ARLLVLEKNADELLQNFIWHTRDVDPDDAKKPEVAPVDKEKAKQDGQQALEHLRTLGTLI  138

Query  145  LTNADFRLFVEDLTTVGREIFSETALALSDTSKQVGEKLKPSEEE---------------  189
            +TN +FR  + D + +GR++ ++ A       K   EK++PSEE+               
Sbjct  139  ITNGEFRKLLSDASVIGRDLAADGA------QK-AAEKVRPSEEQLAQVDEPAPDNTWHE  191

Query  190  ------RGAVKG-----------------------------AGADDGRAVSGEELRKEVT  214
                   G +K                              AG++D RA +      +V 
Sbjct  192  TPDLSIPGQLKQHPKDDGKGAPVKTGDGEEAAGEAAQAAQPAGSEDPRAQAQAAAADQVG  251

Query  215  Q------VAEVAGHGL---------------KATGRDAIDSAKEHLTG---QER-DTLLH  249
                    AE    GL               K   R+  +  K +L+    +ER D  ++
Sbjct  252  GDASDVDAAEGKKAGLDKLKGRLSDRVPQEHKDRAREHAERTKNYLSEKFPEERRDQFIY  311

Query  250  RLKRAVIKLRERSDYSDSVATLSHLVQRYAQLYANAASEVVSTAEEEADVNEDLQQAMEQ  309
            RLK+ V++ +   DY +++  L  L + YA      A +   +A+     +  LQQA  +
Sbjct  312  RLKKVVVECQGHPDYQEAIEWLLDLAEEYAGHGKTVAQQGAGSAKGARS-DPSLQQAETE  370

Query  310  LWKLLQSYGDVEEWKKLEERFKDVIKHANKDPEFEKIMSEIGSALQEMLTDPKFFDKAPQ  369
            L  LL             ERF      AN        + +I  A+ ++  D         
Sbjct  371  LRTLL-------------ERF------ANG-----TSLDDIFDAINQLYDD-------AD  399

Query  370  KVDELKEKSKNVGTETTLRRDVDAFLVQAKRTLRT---VPED---TQVSKLVDVTRKIYW  423
            +  EL+   KN          VD ++   ++ L     + ED    + ++L D  R    
Sbjct  400  RDPELRGWFKN----------VDTYI---RKCLLEPGYILEDECNREWNELYDSGRYFLR  446

Query  424  DAWNGYQDR------------------------------------------KSQLPSDMA  441
            D + G+ DR                                          K  L  D+ 
Sbjct  447  DKYKGHTDRLFDEIKFWFDQFDEDPLNKRFGEDWARLTKDLGFDSEGKLTFKPHLWKDIR  506

Query  442  EIFFPVIIRSIQYIPIPRLEISAPEMDLLIENLILE  477
            ++  P +  ++ Y+PIPR+E + P +DL+IENL+LE
Sbjct  507  DVILPALFENVGYVPIPRIEYTDPMLDLVIENLVLE  542



Lambda      K        H        a         alpha
   0.318    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 938573040


Query= TCONS_00011549

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00011551

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.143    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00011552

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain. This family...  162     2e-48
CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  112     2e-31
CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The cen...  100     4e-27


>CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain.  This family consists 
of the C terminal region of the DnaJ protein. It is always 
found associated with pfam00226 and pfam00684. DnaJ is a 
chaperone associated with the Hsp70 heat-shock system involved 
in protein folding and renaturation after stress. The two 
C-terminal domains CTDI and CTDII, both incorporated in this 
family are necessary for maintaining the J-domains in their 
specific relative positions. Structural analysis of Structure 
1nlt shows that pfam00684 is nested within this DnaJ C-terminal 
region.
Length=213

 Score = 162 bits (412),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 73/246 (30%), Positives = 104/246 (42%), Gaps = 36/246 (15%)

Query  133  MEMRVALPLRDFYTGREIRFGIEKQQICDACEGTGSADR-QVVTCPKCNGRGRVIQKHML  191
            +E  + L L + Y G   +  I +  ICD C G+G+       TCP C G G+V ++   
Sbjct  1    LEYELELTLEEAYFGCTKKIKITRNVICDTCGGSGAKPGTSPKTCPCCGGGGQVRRQ---  57

Query  192  APGMYQQVQMTCDACHGQGKTIKKPCPVCAGQRVVRREVETVATVEPGMDKGTRLVFENE  251
                +      C  C G GK I K C  C G  VV ++   V  +  G+D G R+    E
Sbjct  58   --FGFFSTCTCCPCCGGGGKIIDKCCKCCGGGGVVEKKTLEV-KIPAGVDDGQRIRLRGE  114

Query  252  GDESPD-WVAGDLILVLEEKEPELAADEARRTDGTFFRRKGRHLFWREVLSLREAWMGDW  310
            GD   +    GDL +V+  K                FRR G  L+    +SL EA +G  
Sbjct  115  GDAGENGGPPGDLYVVIRVKPHP------------VFRRDGDDLYCTVPISLTEALLGG-  161

Query  311  TRNITHLDGHV-VQLSRKRGEVVQPLSVETVKGEGMPFYSEGHLHEHHDHDSEPGNLYVE  369
            T  +  LDG V +++        QP +V  +KG+GMP                 G+LYV 
Sbjct  162  TIEVPTLDGKVKLKIP----AGTQPGTVLRLKGKGMPRL----------KGGGRGDLYVT  207

Query  370  YTVILP  375
              V +P
Sbjct  208  VKVEVP  213


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 112 bits (283),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 38/63 (60%), Positives = 48/63 (76%), Gaps = 0/63 (0%)

Query  22  DYYKILGLDRSASERDIKRAYRTLSKKFHPDKNPGDETARERFVEIADAYDVLSTPATRK  81
           DYY+ILG+   AS+ +IK+AYR L+ K+HPDKNPGD  A E+F EI +AY+VLS P  R 
Sbjct  1   DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRA  60

Query  82  IYD  84
           IYD
Sbjct  61  IYD  63


>CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain.  The central cysteine-rich 
(CR) domain of DnaJ proteins contains four repeats 
of the motif CXXCXGXG where X is any amino acid. The isolated 
cysteine rich domain folds in zinc dependent fashion. 
Each set of two repeats binds one unit of zinc. Although this 
domain has been implicated in substrate binding, no evidence 
of specific interaction between the isolated DNAJ cysteine 
rich domain and various hydrophobic peptides has been found.
Length=65

 Score = 100 bits (252),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 27/66 (41%), Positives = 34/66 (52%), Gaps = 2/66 (3%)

Query  160  CDACEGTGSAD-RQVVTCPKCNGRGRVIQKHMLAPGMYQQVQMTCDACHGQGKTIKKPCP  218
            C  C G+G+    +  TCP C G G+V +     PG +Q  Q TC  C G GK IK PC 
Sbjct  1    CPTCNGSGAKPGTKPTTCPTCGGTGQVRRVQQTGPGFFQM-QSTCPTCGGTGKIIKDPCK  59

Query  219  VCAGQR  224
             C G+ 
Sbjct  60   KCKGKG  65



Lambda      K        H        a         alpha
   0.320    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00011553

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain. This family...  162     2e-48
CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  104     2e-28
CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The cen...  100     5e-27


>CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain.  This family consists 
of the C terminal region of the DnaJ protein. It is always 
found associated with pfam00226 and pfam00684. DnaJ is a 
chaperone associated with the Hsp70 heat-shock system involved 
in protein folding and renaturation after stress. The two 
C-terminal domains CTDI and CTDII, both incorporated in this 
family are necessary for maintaining the J-domains in their 
specific relative positions. Structural analysis of Structure 
1nlt shows that pfam00684 is nested within this DnaJ C-terminal 
region.
Length=213

 Score = 162 bits (413),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 73/246 (30%), Positives = 104/246 (42%), Gaps = 36/246 (15%)

Query  143  MEMRVALPLRDFYTGREIRFGIEKQQICDACEGTGSADR-QVVTCPKCNGRGRVIQKHML  201
            +E  + L L + Y G   +  I +  ICD C G+G+       TCP C G G+V ++   
Sbjct  1    LEYELELTLEEAYFGCTKKIKITRNVICDTCGGSGAKPGTSPKTCPCCGGGGQVRRQ---  57

Query  202  APGMYQQVQMTCDACHGQGKTIKKPCPVCAGQRVVRREVETVATVEPGMDKGTRLVFENE  261
                +      C  C G GK I K C  C G  VV ++   V  +  G+D G R+    E
Sbjct  58   --FGFFSTCTCCPCCGGGGKIIDKCCKCCGGGGVVEKKTLEV-KIPAGVDDGQRIRLRGE  114

Query  262  GDESPD-WVAGDLILVLEEKEPELAADEARRTDGTFFRRKGRHLFWREVLSLREAWMGDW  320
            GD   +    GDL +V+  K                FRR G  L+    +SL EA +G  
Sbjct  115  GDAGENGGPPGDLYVVIRVKPHP------------VFRRDGDDLYCTVPISLTEALLGG-  161

Query  321  TRNITHLDGHV-VQLSRKRGEVVQPLSVETVKGEGMPFYSEGHLHEHHDHDSEPGNLYVE  379
            T  +  LDG V +++        QP +V  +KG+GMP                 G+LYV 
Sbjct  162  TIEVPTLDGKVKLKIP----AGTQPGTVLRLKGKGMPRL----------KGGGRGDLYVT  207

Query  380  YTVILP  385
              V +P
Sbjct  208  VKVEVP  213


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 104 bits (262),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 38/73 (52%), Positives = 48/73 (66%), Gaps = 10/73 (14%)

Query  22  DYYKILGLDRSASERDIKRAYRTLSKKFHPDKNPFMGSFKYDGRGDETARERFVEIADAY  81
           DYY+ILG+   AS+ +IK+AYR L+ K+HPDKNP          GD  A E+F EI +AY
Sbjct  1   DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNP----------GDPEAEEKFKEINEAY  50

Query  82  DVLSTPATRKIYD  94
           +VLS P  R IYD
Sbjct  51  EVLSDPEKRAIYD  63


>CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain.  The central cysteine-rich 
(CR) domain of DnaJ proteins contains four repeats 
of the motif CXXCXGXG where X is any amino acid. The isolated 
cysteine rich domain folds in zinc dependent fashion. 
Each set of two repeats binds one unit of zinc. Although this 
domain has been implicated in substrate binding, no evidence 
of specific interaction between the isolated DNAJ cysteine 
rich domain and various hydrophobic peptides has been found.
Length=65

 Score = 100 bits (252),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 27/66 (41%), Positives = 34/66 (52%), Gaps = 2/66 (3%)

Query  170  CDACEGTGSAD-RQVVTCPKCNGRGRVIQKHMLAPGMYQQVQMTCDACHGQGKTIKKPCP  228
            C  C G+G+    +  TCP C G G+V +     PG +Q  Q TC  C G GK IK PC 
Sbjct  1    CPTCNGSGAKPGTKPTTCPTCGGTGQVRRVQQTGPGFFQM-QSTCPTCGGTGKIIKDPCK  59

Query  229  VCAGQR  234
             C G+ 
Sbjct  60   KCKGKG  65



Lambda      K        H        a         alpha
   0.320    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00017767

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459696 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-ter...  65.6    4e-15


>CDD:459696 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-terminal domain. 
 This family includes small ribosomal subunit S9 from 
prokaryotes and S16 from metazoans. This domain is predicted 
to bind to ribosomal RNA. This domain is composed of four 
helices in the known structure. However the domain is discontinuous 
in sequence and the alignment for this family contains 
only the first three helices.
Length=96

 Score = 65.6 bits (161),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 45/87 (52%), Gaps = 8/87 (9%)

Query  4   QLKYHEKKLLRKVDFINYKSDGGHREHQIRQRYHLQNDTDYKSYNALAGSLRQLAHKLSQ  63
           + K  E+KLLR+V F  +K    HRE ++      QN  +Y  Y    G +R+L+  L Q
Sbjct  1   RYKGPEQKLLRRVGFKLWKKGRCHRELKV-----AQNRREYPKYPGQHGKIRKLSEYLLQ  55

Query  64  LDPDSDPLRKK--IESEVLDKLWRMGL  88
           L      +R+K  +  + L KL+ MGL
Sbjct  56  LREK-QKVRRKYGLLEKQLRKLYDMGL  81



Lambda      K        H        a         alpha
   0.321    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0665    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00011554

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459696 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-ter...  65.6    4e-15


>CDD:459696 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-terminal domain. 
 This family includes small ribosomal subunit S9 from 
prokaryotes and S16 from metazoans. This domain is predicted 
to bind to ribosomal RNA. This domain is composed of four 
helices in the known structure. However the domain is discontinuous 
in sequence and the alignment for this family contains 
only the first three helices.
Length=96

 Score = 65.6 bits (161),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 45/87 (52%), Gaps = 8/87 (9%)

Query  4   QLKYHEKKLLRKVDFINYKSDGGHREHQIRQRYHLQNDTDYKSYNALAGSLRQLAHKLSQ  63
           + K  E+KLLR+V F  +K    HRE ++      QN  +Y  Y    G +R+L+  L Q
Sbjct  1   RYKGPEQKLLRRVGFKLWKKGRCHRELKV-----AQNRREYPKYPGQHGKIRKLSEYLLQ  55

Query  64  LDPDSDPLRKK--IESEVLDKLWRMGL  88
           L      +R+K  +  + L KL+ MGL
Sbjct  56  LREK-QKVRRKYGLLEKQLRKLYDMGL  81



Lambda      K        H        a         alpha
   0.321    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00017768

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459696 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-ter...  64.9    7e-15


>CDD:459696 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-terminal domain. 
 This family includes small ribosomal subunit S9 from 
prokaryotes and S16 from metazoans. This domain is predicted 
to bind to ribosomal RNA. This domain is composed of four 
helices in the known structure. However the domain is discontinuous 
in sequence and the alignment for this family contains 
only the first three helices.
Length=96

 Score = 64.9 bits (159),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 45/87 (52%), Gaps = 8/87 (9%)

Query  4   QLKYHEKKLLRKVDFINYKSDGGHREHQIRQRYHLQNDTDYKSYNALAGSLRQLAHKLSQ  63
           + K  E+KLLR+V F  +K    HRE ++      QN  +Y  Y    G +R+L+  L Q
Sbjct  1   RYKGPEQKLLRRVGFKLWKKGRCHRELKV-----AQNRREYPKYPGQHGKIRKLSEYLLQ  55

Query  64  LDPDSDPLRKK--IESEVLDKLWRMGL  88
           L      +R+K  +  + L KL+ MGL
Sbjct  56  LREK-QKVRRKYGLLEKQLRKLYDMGL  81



Lambda      K        H        a         alpha
   0.321    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00011555

Length=153
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459696 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-ter...  63.7    9e-15


>CDD:459696 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-terminal domain. 
 This family includes small ribosomal subunit S9 from 
prokaryotes and S16 from metazoans. This domain is predicted 
to bind to ribosomal RNA. This domain is composed of four 
helices in the known structure. However the domain is discontinuous 
in sequence and the alignment for this family contains 
only the first three helices.
Length=96

 Score = 63.7 bits (156),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 45/87 (52%), Gaps = 8/87 (9%)

Query  4   QLKYHEKKLLRKVDFINYKSDGGHREHQIRQRYHLQNDTDYKSYNALAGSLRQLAHKLSQ  63
           + K  E+KLLR+V F  +K    HRE ++      QN  +Y  Y    G +R+L+  L Q
Sbjct  1   RYKGPEQKLLRRVGFKLWKKGRCHRELKV-----AQNRREYPKYPGQHGKIRKLSEYLLQ  55

Query  64  LDPDSDPLRKK--IESEVLDKLWRMGL  88
           L      +R+K  +  + L KL+ MGL
Sbjct  56  LREK-QKVRRKYGLLEKQLRKLYDMGL  81



Lambda      K        H        a         alpha
   0.323    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00017769

Length=153
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459696 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-ter...  63.7    9e-15


>CDD:459696 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-terminal domain. 
 This family includes small ribosomal subunit S9 from 
prokaryotes and S16 from metazoans. This domain is predicted 
to bind to ribosomal RNA. This domain is composed of four 
helices in the known structure. However the domain is discontinuous 
in sequence and the alignment for this family contains 
only the first three helices.
Length=96

 Score = 63.7 bits (156),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 45/87 (52%), Gaps = 8/87 (9%)

Query  4   QLKYHEKKLLRKVDFINYKSDGGHREHQIRQRYHLQNDTDYKSYNALAGSLRQLAHKLSQ  63
           + K  E+KLLR+V F  +K    HRE ++      QN  +Y  Y    G +R+L+  L Q
Sbjct  1   RYKGPEQKLLRRVGFKLWKKGRCHRELKV-----AQNRREYPKYPGQHGKIRKLSEYLLQ  55

Query  64  LDPDSDPLRKK--IESEVLDKLWRMGL  88
           L      +R+K  +  + L KL+ MGL
Sbjct  56  LREK-QKVRRKYGLLEKQLRKLYDMGL  81



Lambda      K        H        a         alpha
   0.323    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00011556

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459696 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-ter...  65.6    4e-15


>CDD:459696 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-terminal domain. 
 This family includes small ribosomal subunit S9 from 
prokaryotes and S16 from metazoans. This domain is predicted 
to bind to ribosomal RNA. This domain is composed of four 
helices in the known structure. However the domain is discontinuous 
in sequence and the alignment for this family contains 
only the first three helices.
Length=96

 Score = 65.6 bits (161),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 45/87 (52%), Gaps = 8/87 (9%)

Query  4   QLKYHEKKLLRKVDFINYKSDGGHREHQIRQRYHLQNDTDYKSYNALAGSLRQLAHKLSQ  63
           + K  E+KLLR+V F  +K    HRE ++      QN  +Y  Y    G +R+L+  L Q
Sbjct  1   RYKGPEQKLLRRVGFKLWKKGRCHRELKV-----AQNRREYPKYPGQHGKIRKLSEYLLQ  55

Query  64  LDPDSDPLRKK--IESEVLDKLWRMGL  88
           L      +R+K  +  + L KL+ MGL
Sbjct  56  LREK-QKVRRKYGLLEKQLRKLYDMGL  81



Lambda      K        H        a         alpha
   0.321    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00017770

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00017771

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00011557

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00017772

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00011559

Length=601


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 760663852


Query= TCONS_00011560

Length=510


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 634393654


Query= TCONS_00011562

Length=545


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 687385964


Query= TCONS_00011563

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463596 pfam12464, Mac, Maltose acetyltransferase. This domain...  65.2    4e-15


>CDD:463596 pfam12464, Mac, Maltose acetyltransferase.  This domain family 
is found in bacteria, archaea and eukaryotes, and is approximately 
50 amino acids in length. The family is found in association 
with pfam00132. Mac uses acetyl-CoA as acetyl donor 
to acetylated cytoplasmic maltose.
Length=52

 Score = 65.2 bits (160),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 0/47 (0%)

Query  12  RMLRGELYYAFTPELIALRTRCKLACQRFNNAGEVSRRRHIELWKDI  58
           +ML GELY A  PEL+A R R +   +R+NN          EL K++
Sbjct  1   KMLAGELYDASDPELVAERLRARRLLRRYNNTPPEDAEEREELLKEL  47



Lambda      K        H        a         alpha
   0.320    0.140    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00011561

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463596 pfam12464, Mac, Maltose acetyltransferase. This domain...  65.2    4e-15


>CDD:463596 pfam12464, Mac, Maltose acetyltransferase.  This domain family 
is found in bacteria, archaea and eukaryotes, and is approximately 
50 amino acids in length. The family is found in association 
with pfam00132. Mac uses acetyl-CoA as acetyl donor 
to acetylated cytoplasmic maltose.
Length=52

 Score = 65.2 bits (160),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 0/47 (0%)

Query  12  RMLRGELYYAFTPELIALRTRCKLACQRFNNAGEVSRRRHIELWKDI  58
           +ML GELY A  PEL+A R R +   +R+NN          EL K++
Sbjct  1   KMLAGELYDASDPELVAERLRARRLLRRYNNTPPEDAEEREELLKEL  47



Lambda      K        H        a         alpha
   0.320    0.140    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00011564

Length=400


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00011565

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463596 pfam12464, Mac, Maltose acetyltransferase. This domain...  65.2    4e-15


>CDD:463596 pfam12464, Mac, Maltose acetyltransferase.  This domain family 
is found in bacteria, archaea and eukaryotes, and is approximately 
50 amino acids in length. The family is found in association 
with pfam00132. Mac uses acetyl-CoA as acetyl donor 
to acetylated cytoplasmic maltose.
Length=52

 Score = 65.2 bits (160),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 0/47 (0%)

Query  12  RMLRGELYYAFTPELIALRTRCKLACQRFNNAGEVSRRRHIELWKDI  58
           +ML GELY A  PEL+A R R +   +R+NN          EL K++
Sbjct  1   KMLAGELYDASDPELVAERLRARRLLRRYNNTPPEDAEEREELLKEL  47



Lambda      K        H        a         alpha
   0.320    0.140    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00011566

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00011567

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463596 pfam12464, Mac, Maltose acetyltransferase. This domain...  66.7    1e-15


>CDD:463596 pfam12464, Mac, Maltose acetyltransferase.  This domain family 
is found in bacteria, archaea and eukaryotes, and is approximately 
50 amino acids in length. The family is found in association 
with pfam00132. Mac uses acetyl-CoA as acetyl donor 
to acetylated cytoplasmic maltose.
Length=52

 Score = 66.7 bits (164),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 20/47 (43%), Positives = 26/47 (55%), Gaps = 0/47 (0%)

Query  12  RMLRGELYYAFTPELIALRTRCKLACQRFNNAGEVSRRRHIELWKEI  58
           +ML GELY A  PEL+A R R +   +R+NN          EL KE+
Sbjct  1   KMLAGELYDASDPELVAERLRARRLLRRYNNTPPEDAEEREELLKEL  47



Lambda      K        H        a         alpha
   0.320    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00011568

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00011570

Length=2516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF351...  460     1e-146
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      211     3e-61 


>CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF3517).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is about 340 amino acids 
in length. This domain is found associated with pfam00443.
Length=407

 Score = 460 bits (1187),  Expect = 1e-146, Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 229/413 (55%), Gaps = 15/413 (4%)

Query  2056  SAGIRNLVLRSPHASVRDSTIKVIMRALERLQE---LRDEAHLDERAKEKWHMRYLDGFE  2112
                +R L+LR+P A VR +  K+I+ AL +L+E   L D     +  +E+W        E
Sbjct  1     PEALRELLLRNPDAEVRSAFGKLIVFALHKLKELYGLPDGPCDPDDLEEEWRSLSDSVLE  60

Query  2113  NVVATLDGLWPVLHTTSRSWDDYFTFLISLAKLGSYETEMILNSGFLLKCLEIVWLDGED  2172
              VVA LD LW   HT  RSWD+YF  L+S A LG  E   +L+ GFLLKCLEI+  D  D
Sbjct  61    AVVALLDHLWKEFHTHLRSWDEYFGLLLSYANLGPREVAQLLDLGFLLKCLEIIAADEGD  120

Query  2173  SKRLKRQYLSYCRLVEKGRKFSHRRLMELLAFLLTKVDLTVAPTSDDERR-----SLPNG  2227
                LK QY    RLVEK R  S+ +L++LL+ LL   DL++ P S +E       SLP+G
Sbjct  121   GPPLKYQYARMLRLVEKRRPPSYEKLIQLLSVLLRCCDLSLPPQSINEGAEPLPNSLPDG  180

Query  2228  KFSLTITENVFVRSLGRDRELSLLKKILHTNHNPHASMAIVELLLDSEPEAGLMDPLCKV  2287
              F LT  E   +R LGR      +KK+L  + NP A+  I+  LL   PE  L D + K 
Sbjct  181   PFPLTSEEADLLRPLGRTNGSIFVKKLLEIDQNPEATRKILRFLLWENPE--LSDSILKT  238

Query  2288  LEDGLRVEPAELCA-PFLEATLILCQRSPDENRIVALIDFVAKGIESINDSGGREHLAFF  2346
             L  G+R  PA L   PFL A ++ C+ S   +RI  LID VAK  +S+N++ GR  L FF
Sbjct  239   LLWGIRGAPAHLLRDPFLRAAIVFCEDSWQAHRIHNLIDHVAKQADSLNNTEGRAFLHFF  298

Query  2347  TSLLTSRNERLGLEKNWFLAQIVDKIPDWAPTLLIFPDRTVRNTTLALLHQILFSVEAED  2406
                    N RLG +K WF +Q+++ IPDWAP LL +PD  VR+ T   L + LFS E   
Sbjct  299   KRAYQCINCRLGFDKEWFASQVLENIPDWAPPLLSYPDSNVRSETEDFLQEELFSHE---  355

Query  2407  MGPDWQSRHAEIVKELVRNSVEKLRKTFLTGSVNNVEARVIESVKAVIDHCLV  2459
             MGPD Q R  E  + L    +E LR T++    + VE   +E+++ VI+ C  
Sbjct  356   MGPDPQFRLREAARRLGIACLEYLRGTYVL-RRSQVERSAVETLQRVIELCPE  407


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 211 bits (539),  Expect = 3e-61, Method: Composition-based stats.
 Identities = 101/342 (30%), Positives = 152/342 (44%), Gaps = 47/342 (14%)

Query  1601  AGLKNLSNTCYLNSLLTQLFMNVQFRDFMLQLH----LSDPDTSQRLLAETKKLFAYMQE  1656
              GL NL NTCY+NS+L  LF    FRD++L++      S  +    LL   + LF  +Q+
Sbjct  1     TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  1657  -TWLRNVDPQGLVDNIRTYDNEPIDVTIQMDVDEFYNLLFDRWEAQITGAEDKKK----F  1711
              +   +V P+    ++    N       Q D  EF   L D     + G    +      
Sbjct  61    NSKSSSVSPKMFKKSLG-KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLIT  119

Query  1712  RSFYGGQLVQQIKSKECPHISERLEPFSAIQCEIKGR------ASLEESLQAYVEGEIMQ  1765
               F  GQL  ++K   C  +SE  EPFS +   I G       ASL+     + + E + 
Sbjct  120   DLF-RGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELD  178

Query  1766  GDNKYSCTSCGRHVDAVKRACLKEVPDNLIFHLKRFDFDMITMMRSKINDEFRFPEHIDM  1825
              + KY C  CG   DA+K+  +  +P  LI HLKRF ++       K+N E  FP  +D+
Sbjct  179   DEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYN--RSTWEKLNTEVEFPLELDL  236

Query  1826  SPFKVEYLSDQNSNVPEDVFKLVGVLVHSGTAESGHYYSYIRERPNAGGRGSWVEFNDSD  1885
             S +  E L  + +N+ +  ++LV V+VHSG+  SGHY +YI+   N      W +F+D  
Sbjct  237   SRYLAEELKPKTNNLQD--YRLVAVVVHSGSLSSGHYIAYIKAYEN----NRWYKFDDEK  290

Query  1886  VSRFDPSKIADQCFGGYNDSVHPANVNQVRFNKVWNAYMLFY  1927
             V+  D                              +AY+LFY
Sbjct  291   VTEVDEETA----------------------VLSSSAYILFY  310



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3133487872


Query= TCONS_00011569

Length=2523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF351...  460     1e-146
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      211     3e-61 


>CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF3517).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is about 340 amino acids 
in length. This domain is found associated with pfam00443.
Length=407

 Score = 460 bits (1187),  Expect = 1e-146, Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 229/413 (55%), Gaps = 15/413 (4%)

Query  2056  SAGIRNLVLRSPHASVRDSTIKVIMRALERLQE---LRDEAHLDERAKEKWHMRYLDGFE  2112
                +R L+LR+P A VR +  K+I+ AL +L+E   L D     +  +E+W        E
Sbjct  1     PEALRELLLRNPDAEVRSAFGKLIVFALHKLKELYGLPDGPCDPDDLEEEWRSLSDSVLE  60

Query  2113  NVVATLDGLWPVLHTTSRSWDDYFTFLISLAKLGSYETEMILNSGFLLKCLEIVWLDGED  2172
              VVA LD LW   HT  RSWD+YF  L+S A LG  E   +L+ GFLLKCLEI+  D  D
Sbjct  61    AVVALLDHLWKEFHTHLRSWDEYFGLLLSYANLGPREVAQLLDLGFLLKCLEIIAADEGD  120

Query  2173  SKRLKRQYLSYCRLVEKGRKFSHRRLMELLAFLLTKVDLTVAPTSDDERR-----SLPNG  2227
                LK QY    RLVEK R  S+ +L++LL+ LL   DL++ P S +E       SLP+G
Sbjct  121   GPPLKYQYARMLRLVEKRRPPSYEKLIQLLSVLLRCCDLSLPPQSINEGAEPLPNSLPDG  180

Query  2228  KFSLTITENVFVRSLGRDRELSLLKKILHTNHNPHASMAIVELLLDSEPEAGLMDPLCKV  2287
              F LT  E   +R LGR      +KK+L  + NP A+  I+  LL   PE  L D + K 
Sbjct  181   PFPLTSEEADLLRPLGRTNGSIFVKKLLEIDQNPEATRKILRFLLWENPE--LSDSILKT  238

Query  2288  LEDGLRVEPAELCA-PFLEATLILCQRSPDENRIVALIDFVAKGIESINDSGGREHLAFF  2346
             L  G+R  PA L   PFL A ++ C+ S   +RI  LID VAK  +S+N++ GR  L FF
Sbjct  239   LLWGIRGAPAHLLRDPFLRAAIVFCEDSWQAHRIHNLIDHVAKQADSLNNTEGRAFLHFF  298

Query  2347  TSLLTSRNERLGLEKNWFLAQIVDKIPDWAPTLLIFPDRTVRNTTLALLHQILFSVEAED  2406
                    N RLG +K WF +Q+++ IPDWAP LL +PD  VR+ T   L + LFS E   
Sbjct  299   KRAYQCINCRLGFDKEWFASQVLENIPDWAPPLLSYPDSNVRSETEDFLQEELFSHE---  355

Query  2407  MGPDWQSRHAEIVKELVRNSVEKLRKTFLTGSVNNVEARVIESVKAVIDHCLV  2459
             MGPD Q R  E  + L    +E LR T++    + VE   +E+++ VI+ C  
Sbjct  356   MGPDPQFRLREAARRLGIACLEYLRGTYVL-RRSQVERSAVETLQRVIELCPE  407


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 211 bits (539),  Expect = 3e-61, Method: Composition-based stats.
 Identities = 101/342 (30%), Positives = 152/342 (44%), Gaps = 47/342 (14%)

Query  1601  AGLKNLSNTCYLNSLLTQLFMNVQFRDFMLQLH----LSDPDTSQRLLAETKKLFAYMQE  1656
              GL NL NTCY+NS+L  LF    FRD++L++      S  +    LL   + LF  +Q+
Sbjct  1     TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  1657  -TWLRNVDPQGLVDNIRTYDNEPIDVTIQMDVDEFYNLLFDRWEAQITGAEDKKK----F  1711
              +   +V P+    ++    N       Q D  EF   L D     + G    +      
Sbjct  61    NSKSSSVSPKMFKKSLG-KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLIT  119

Query  1712  RSFYGGQLVQQIKSKECPHISERLEPFSAIQCEIKGR------ASLEESLQAYVEGEIMQ  1765
               F  GQL  ++K   C  +SE  EPFS +   I G       ASL+     + + E + 
Sbjct  120   DLF-RGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELD  178

Query  1766  GDNKYSCTSCGRHVDAVKRACLKEVPDNLIFHLKRFDFDMITMMRSKINDEFRFPEHIDM  1825
              + KY C  CG   DA+K+  +  +P  LI HLKRF ++       K+N E  FP  +D+
Sbjct  179   DEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYN--RSTWEKLNTEVEFPLELDL  236

Query  1826  SPFKVEYLSDQNSNVPEDVFKLVGVLVHSGTAESGHYYSYIRERPNAGGRGSWVEFNDSD  1885
             S +  E L  + +N+ +  ++LV V+VHSG+  SGHY +YI+   N      W +F+D  
Sbjct  237   SRYLAEELKPKTNNLQD--YRLVAVVVHSGSLSSGHYIAYIKAYEN----NRWYKFDDEK  290

Query  1886  VSRFDPSKIADQCFGGYNDSVHPANVNQVRFNKVWNAYMLFY  1927
             V+  D                              +AY+LFY
Sbjct  291   VTEVDEETA----------------------VLSSSAYILFY  310



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3142574208


Query= TCONS_00017775

Length=1242


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1598692510


Query= TCONS_00011571

Length=2502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF351...  460     1e-146
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      211     4e-61 


>CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF3517).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is about 340 amino acids 
in length. This domain is found associated with pfam00443.
Length=407

 Score = 460 bits (1186),  Expect = 1e-146, Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 229/413 (55%), Gaps = 15/413 (4%)

Query  2056  SAGIRNLVLRSPHASVRDSTIKVIMRALERLQE---LRDEAHLDERAKEKWHMRYLDGFE  2112
                +R L+LR+P A VR +  K+I+ AL +L+E   L D     +  +E+W        E
Sbjct  1     PEALRELLLRNPDAEVRSAFGKLIVFALHKLKELYGLPDGPCDPDDLEEEWRSLSDSVLE  60

Query  2113  NVVATLDGLWPVLHTTSRSWDDYFTFLISLAKLGSYETEMILNSGFLLKCLEIVWLDGED  2172
              VVA LD LW   HT  RSWD+YF  L+S A LG  E   +L+ GFLLKCLEI+  D  D
Sbjct  61    AVVALLDHLWKEFHTHLRSWDEYFGLLLSYANLGPREVAQLLDLGFLLKCLEIIAADEGD  120

Query  2173  SKRLKRQYLSYCRLVEKGRKFSHRRLMELLAFLLTKVDLTVAPTSDDERR-----SLPNG  2227
                LK QY    RLVEK R  S+ +L++LL+ LL   DL++ P S +E       SLP+G
Sbjct  121   GPPLKYQYARMLRLVEKRRPPSYEKLIQLLSVLLRCCDLSLPPQSINEGAEPLPNSLPDG  180

Query  2228  KFSLTITENVFVRSLGRDRELSLLKKILHTNHNPHASMAIVELLLDSEPEAGLMDPLCKV  2287
              F LT  E   +R LGR      +KK+L  + NP A+  I+  LL   PE  L D + K 
Sbjct  181   PFPLTSEEADLLRPLGRTNGSIFVKKLLEIDQNPEATRKILRFLLWENPE--LSDSILKT  238

Query  2288  LEDGLRVEPAELCA-PFLEATLILCQRSPDENRIVALIDFVAKGIESINDSGGREHLAFF  2346
             L  G+R  PA L   PFL A ++ C+ S   +RI  LID VAK  +S+N++ GR  L FF
Sbjct  239   LLWGIRGAPAHLLRDPFLRAAIVFCEDSWQAHRIHNLIDHVAKQADSLNNTEGRAFLHFF  298

Query  2347  TSLLTSRNERLGLEKNWFLAQIVDKIPDWAPTLLIFPDRTVRNTTLALLHQILFSVEAED  2406
                    N RLG +K WF +Q+++ IPDWAP LL +PD  VR+ T   L + LFS E   
Sbjct  299   KRAYQCINCRLGFDKEWFASQVLENIPDWAPPLLSYPDSNVRSETEDFLQEELFSHE---  355

Query  2407  MGPDWQSRHAEIVKELVRNSVEKLRKTFLTGSVNNVEARVIESVKAVIDHCLV  2459
             MGPD Q R  E  + L    +E LR T++    + VE   +E+++ VI+ C  
Sbjct  356   MGPDPQFRLREAARRLGIACLEYLRGTYVL-RRSQVERSAVETLQRVIELCPE  407


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 211 bits (538),  Expect = 4e-61, Method: Composition-based stats.
 Identities = 101/342 (30%), Positives = 152/342 (44%), Gaps = 47/342 (14%)

Query  1601  AGLKNLSNTCYLNSLLTQLFMNVQFRDFMLQLH----LSDPDTSQRLLAETKKLFAYMQE  1656
              GL NL NTCY+NS+L  LF    FRD++L++      S  +    LL   + LF  +Q+
Sbjct  1     TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  1657  -TWLRNVDPQGLVDNIRTYDNEPIDVTIQMDVDEFYNLLFDRWEAQITGAEDKKK----F  1711
              +   +V P+    ++    N       Q D  EF   L D     + G    +      
Sbjct  61    NSKSSSVSPKMFKKSLG-KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLIT  119

Query  1712  RSFYGGQLVQQIKSKECPHISERLEPFSAIQCEIKGR------ASLEESLQAYVEGEIMQ  1765
               F  GQL  ++K   C  +SE  EPFS +   I G       ASL+     + + E + 
Sbjct  120   DLF-RGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELD  178

Query  1766  GDNKYSCTSCGRHVDAVKRACLKEVPDNLIFHLKRFDFDMITMMRSKINDEFRFPEHIDM  1825
              + KY C  CG   DA+K+  +  +P  LI HLKRF ++       K+N E  FP  +D+
Sbjct  179   DEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYN--RSTWEKLNTEVEFPLELDL  236

Query  1826  SPFKVEYLSDQNSNVPEDVFKLVGVLVHSGTAESGHYYSYIRERPNAGGRGSWVEFNDSD  1885
             S +  E L  + +N+ +  ++LV V+VHSG+  SGHY +YI+   N      W +F+D  
Sbjct  237   SRYLAEELKPKTNNLQD--YRLVAVVVHSGSLSSGHYIAYIKAYEN----NRWYKFDDEK  290

Query  1886  VSRFDPSKIADQCFGGYNDSVHPANVNQVRFNKVWNAYMLFY  1927
             V+  D                              +AY+LFY
Sbjct  291   VTEVDEETA----------------------VLSSSAYILFY  310



Lambda      K        H        a         alpha
   0.319    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0665    0.140     1.90     42.6     43.6 

Effective search space used: 3115315200


Query= TCONS_00017776

Length=910
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF351...  459     5e-155
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      206     2e-60 


>CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF3517).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is about 340 amino acids 
in length. This domain is found associated with pfam00443.
Length=407

 Score = 459 bits (1184),  Expect = 5e-155, Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 229/413 (55%), Gaps = 15/413 (4%)

Query  464  SAGIRNLVLRSPHASVRDSTIKVIMRALERLQE---LRDEAHLDERAKEKWHMRYLDGFE  520
               +R L+LR+P A VR +  K+I+ AL +L+E   L D     +  +E+W        E
Sbjct  1    PEALRELLLRNPDAEVRSAFGKLIVFALHKLKELYGLPDGPCDPDDLEEEWRSLSDSVLE  60

Query  521  NVVATLDGLWPVLHTTSRSWDDYFTFLISLAKLGSYETEMILNSGFLLKCLEIVWLDGED  580
             VVA LD LW   HT  RSWD+YF  L+S A LG  E   +L+ GFLLKCLEI+  D  D
Sbjct  61   AVVALLDHLWKEFHTHLRSWDEYFGLLLSYANLGPREVAQLLDLGFLLKCLEIIAADEGD  120

Query  581  SKRLKRQYLSYCRLVEKGRKFSHRRLMELLAFLLTKVDLTVAPTSDDERR-----SLPNG  635
               LK QY    RLVEK R  S+ +L++LL+ LL   DL++ P S +E       SLP+G
Sbjct  121  GPPLKYQYARMLRLVEKRRPPSYEKLIQLLSVLLRCCDLSLPPQSINEGAEPLPNSLPDG  180

Query  636  KFSLTITENVFVRSLGRDRELSLLKKILHTNHNPHASMAIVELLLDSEPEAGLMDPLCKV  695
             F LT  E   +R LGR      +KK+L  + NP A+  I+  LL   PE  L D + K 
Sbjct  181  PFPLTSEEADLLRPLGRTNGSIFVKKLLEIDQNPEATRKILRFLLWENPE--LSDSILKT  238

Query  696  LEDGLRVEPAELCA-PFLEATLILCQRSPDENRIVALIDFVAKGIESINDSGGREHLAFF  754
            L  G+R  PA L   PFL A ++ C+ S   +RI  LID VAK  +S+N++ GR  L FF
Sbjct  239  LLWGIRGAPAHLLRDPFLRAAIVFCEDSWQAHRIHNLIDHVAKQADSLNNTEGRAFLHFF  298

Query  755  TSLLTSRNERLGLEKNWFLAQIVDKIPDWAPTLLIFPDRTVRNTTLALLHQILFSVEAED  814
                   N RLG +K WF +Q+++ IPDWAP LL +PD  VR+ T   L + LFS E   
Sbjct  299  KRAYQCINCRLGFDKEWFASQVLENIPDWAPPLLSYPDSNVRSETEDFLQEELFSHE---  355

Query  815  MGPDWQSRHAEIVKELVRNSVEKLRKTFLTGSVNNVEARVIESVKAVIDHCLV  867
            MGPD Q R  E  + L    +E LR T++    + VE   +E+++ VI+ C  
Sbjct  356  MGPDPQFRLREAARRLGIACLEYLRGTYVL-RRSQVERSAVETLQRVIELCPE  407


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 206 bits (527),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 101/342 (30%), Positives = 152/342 (44%), Gaps = 47/342 (14%)

Query  9    AGLKNLSNTCYLNSLLTQLFMNVQFRDFMLQLH----LSDPDTSQRLLAETKKLFAYMQE  64
             GL NL NTCY+NS+L  LF    FRD++L++      S  +    LL   + LF  +Q+
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  65   -TWLRNVDPQGLVDNIRTYDNEPIDVTIQMDVDEFYNLLFDRWEAQITGAEDKKK----F  119
             +   +V P+    ++    N       Q D  EF   L D     + G    +      
Sbjct  61   NSKSSSVSPKMFKKSLG-KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLIT  119

Query  120  RSFYGGQLVQQIKSKECPHISERLEPFSAIQCEIKGR------ASLEESLQAYVEGEIMQ  173
              F  GQL  ++K   C  +SE  EPFS +   I G       ASL+     + + E + 
Sbjct  120  DLF-RGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELD  178

Query  174  GDNKYSCTSCGRHVDAVKRACLKEVPDNLIFHLKRFDFDMITMMRSKINDEFRFPEHIDM  233
             + KY C  CG   DA+K+  +  +P  LI HLKRF ++       K+N E  FP  +D+
Sbjct  179  DEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYN--RSTWEKLNTEVEFPLELDL  236

Query  234  SPFKVEYLSDQNSNVPEDVFKLVGVLVHSGTAESGHYYSYIRERPNAGGRGSWVEFNDSD  293
            S +  E L  + +N+ +  ++LV V+VHSG+  SGHY +YI+   N      W +F+D  
Sbjct  237  SRYLAEELKPKTNNLQD--YRLVAVVVHSGSLSSGHYIAYIKAYEN----NRWYKFDDEK  290

Query  294  VSRFDPSKIADQCFGGYNDSVHPANVNQVRFNKVWNAYMLFY  335
            V+  D                              +AY+LFY
Sbjct  291  VTEVDEETA----------------------VLSSSAYILFY  310



Lambda      K        H        a         alpha
   0.321    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1169943910


Query= TCONS_00011572

Length=1250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF351...  461     3e-152
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      206     4e-60 


>CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF3517).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is about 340 amino acids 
in length. This domain is found associated with pfam00443.
Length=407

 Score = 461 bits (1189),  Expect = 3e-152, Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 229/413 (55%), Gaps = 15/413 (4%)

Query  790   SAGIRNLVLRSPHASVRDSTIKVIMRALERLQE---LRDEAHLDERAKEKWHMRYLDGFE  846
                +R L+LR+P A VR +  K+I+ AL +L+E   L D     +  +E+W        E
Sbjct  1     PEALRELLLRNPDAEVRSAFGKLIVFALHKLKELYGLPDGPCDPDDLEEEWRSLSDSVLE  60

Query  847   NVVATLDGLWPVLHTTSRSWDDYFTFLISLAKLGSYETEMILNSGFLLKCLEIVWLDGED  906
              VVA LD LW   HT  RSWD+YF  L+S A LG  E   +L+ GFLLKCLEI+  D  D
Sbjct  61    AVVALLDHLWKEFHTHLRSWDEYFGLLLSYANLGPREVAQLLDLGFLLKCLEIIAADEGD  120

Query  907   SKRLKRQYLSYCRLVEKGRKFSHRRLMELLAFLLTKVDLTVAPTSDDERR-----SLPNG  961
                LK QY    RLVEK R  S+ +L++LL+ LL   DL++ P S +E       SLP+G
Sbjct  121   GPPLKYQYARMLRLVEKRRPPSYEKLIQLLSVLLRCCDLSLPPQSINEGAEPLPNSLPDG  180

Query  962   KFSLTITENVFVRSLGRDRELSLLKKILHTNHNPHASMAIVELLLDSEPEAGLMDPLCKV  1021
              F LT  E   +R LGR      +KK+L  + NP A+  I+  LL   PE  L D + K 
Sbjct  181   PFPLTSEEADLLRPLGRTNGSIFVKKLLEIDQNPEATRKILRFLLWENPE--LSDSILKT  238

Query  1022  LEDGLRVEPAELCA-PFLEATLILCQRSPDENRIVALIDFVAKGIESINDSGGREHLAFF  1080
             L  G+R  PA L   PFL A ++ C+ S   +RI  LID VAK  +S+N++ GR  L FF
Sbjct  239   LLWGIRGAPAHLLRDPFLRAAIVFCEDSWQAHRIHNLIDHVAKQADSLNNTEGRAFLHFF  298

Query  1081  TSLLTSRNERLGLEKNWFLAQIVDKIPDWAPTLLIFPDRTVRNTTLALLHQILFSVEAED  1140
                    N RLG +K WF +Q+++ IPDWAP LL +PD  VR+ T   L + LFS E   
Sbjct  299   KRAYQCINCRLGFDKEWFASQVLENIPDWAPPLLSYPDSNVRSETEDFLQEELFSHE---  355

Query  1141  MGPDWQSRHAEIVKELVRNSVEKLRKTFLTGSVNNVEARVIESVKAVIDHCLV  1193
             MGPD Q R  E  + L    +E LR T++    + VE   +E+++ VI+ C  
Sbjct  356   MGPDPQFRLREAARRLGIACLEYLRGTYVL-RRSQVERSAVETLQRVIELCPE  407


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 206 bits (527),  Expect = 4e-60, Method: Composition-based stats.
 Identities = 101/342 (30%), Positives = 152/342 (44%), Gaps = 47/342 (14%)

Query  335  AGLKNLSNTCYLNSLLTQLFMNVQFRDFMLQLH----LSDPDTSQRLLAETKKLFAYMQE  390
             GL NL NTCY+NS+L  LF    FRD++L++      S  +    LL   + LF  +Q+
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  391  -TWLRNVDPQGLVDNIRTYDNEPIDVTIQMDVDEFYNLLFDRWEAQITGAEDKKK----F  445
             +   +V P+    ++    N       Q D  EF   L D     + G    +      
Sbjct  61   NSKSSSVSPKMFKKSLG-KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLIT  119

Query  446  RSFYGGQLVQQIKSKECPHISERLEPFSAIQCEIKGR------ASLEESLQAYVEGEIMQ  499
              F  GQL  ++K   C  +SE  EPFS +   I G       ASL+     + + E + 
Sbjct  120  DLF-RGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELD  178

Query  500  GDNKYSCTSCGRHVDAVKRACLKEVPDNLIFHLKRFDFDMITMMRSKINDEFRFPEHIDM  559
             + KY C  CG   DA+K+  +  +P  LI HLKRF ++       K+N E  FP  +D+
Sbjct  179  DEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYN--RSTWEKLNTEVEFPLELDL  236

Query  560  SPFKVEYLSDQNSNVPEDVFKLVGVLVHSGTAESGHYYSYIRERPNAGGRGSWVEFNDSD  619
            S +  E L  + +N+ +  ++LV V+VHSG+  SGHY +YI+   N      W +F+D  
Sbjct  237  SRYLAEELKPKTNNLQD--YRLVAVVVHSGSLSSGHYIAYIKAYEN----NRWYKFDDEK  290

Query  620  VSRFDPSKIADQCFGGYNDSVHPANVNQVRFNKVWNAYMLFY  661
            V+  D                              +AY+LFY
Sbjct  291  VTEVDEETA----------------------VLSSSAYILFY  310



Lambda      K        H        a         alpha
   0.320    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1585843200


Query= TCONS_00017777

Length=1224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF351...  460     5e-152
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      206     6e-60 


>CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF3517).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is about 340 amino acids 
in length. This domain is found associated with pfam00443.
Length=407

 Score = 460 bits (1186),  Expect = 5e-152, Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 229/413 (55%), Gaps = 15/413 (4%)

Query  778   SAGIRNLVLRSPHASVRDSTIKVIMRALERLQE---LRDEAHLDERAKEKWHMRYLDGFE  834
                +R L+LR+P A VR +  K+I+ AL +L+E   L D     +  +E+W        E
Sbjct  1     PEALRELLLRNPDAEVRSAFGKLIVFALHKLKELYGLPDGPCDPDDLEEEWRSLSDSVLE  60

Query  835   NVVATLDGLWPVLHTTSRSWDDYFTFLISLAKLGSYETEMILNSGFLLKCLEIVWLDGED  894
              VVA LD LW   HT  RSWD+YF  L+S A LG  E   +L+ GFLLKCLEI+  D  D
Sbjct  61    AVVALLDHLWKEFHTHLRSWDEYFGLLLSYANLGPREVAQLLDLGFLLKCLEIIAADEGD  120

Query  895   SKRLKRQYLSYCRLVEKGRKFSHRRLMELLAFLLTKVDLTVAPTSDDERR-----SLPNG  949
                LK QY    RLVEK R  S+ +L++LL+ LL   DL++ P S +E       SLP+G
Sbjct  121   GPPLKYQYARMLRLVEKRRPPSYEKLIQLLSVLLRCCDLSLPPQSINEGAEPLPNSLPDG  180

Query  950   KFSLTITENVFVRSLGRDRELSLLKKILHTNHNPHASMAIVELLLDSEPEAGLMDPLCKV  1009
              F LT  E   +R LGR      +KK+L  + NP A+  I+  LL   PE  L D + K 
Sbjct  181   PFPLTSEEADLLRPLGRTNGSIFVKKLLEIDQNPEATRKILRFLLWENPE--LSDSILKT  238

Query  1010  LEDGLRVEPAELCA-PFLEATLILCQRSPDENRIVALIDFVAKGIESINDSGGREHLAFF  1068
             L  G+R  PA L   PFL A ++ C+ S   +RI  LID VAK  +S+N++ GR  L FF
Sbjct  239   LLWGIRGAPAHLLRDPFLRAAIVFCEDSWQAHRIHNLIDHVAKQADSLNNTEGRAFLHFF  298

Query  1069  TSLLTSRNERLGLEKNWFLAQIVDKIPDWAPTLLIFPDRTVRNTTLALLHQILFSVEAED  1128
                    N RLG +K WF +Q+++ IPDWAP LL +PD  VR+ T   L + LFS E   
Sbjct  299   KRAYQCINCRLGFDKEWFASQVLENIPDWAPPLLSYPDSNVRSETEDFLQEELFSHE---  355

Query  1129  MGPDWQSRHAEIVKELVRNSVEKLRKTFLTGSVNNVEARVIESVKAVIDHCLV  1181
             MGPD Q R  E  + L    +E LR T++    + VE   +E+++ VI+ C  
Sbjct  356   MGPDPQFRLREAARRLGIACLEYLRGTYVL-RRSQVERSAVETLQRVIELCPE  407


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 206 bits (526),  Expect = 6e-60, Method: Composition-based stats.
 Identities = 101/342 (30%), Positives = 152/342 (44%), Gaps = 47/342 (14%)

Query  323  AGLKNLSNTCYLNSLLTQLFMNVQFRDFMLQLH----LSDPDTSQRLLAETKKLFAYMQE  378
             GL NL NTCY+NS+L  LF    FRD++L++      S  +    LL   + LF  +Q+
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  379  -TWLRNVDPQGLVDNIRTYDNEPIDVTIQMDVDEFYNLLFDRWEAQITGAEDKKK----F  433
             +   +V P+    ++    N       Q D  EF   L D     + G    +      
Sbjct  61   NSKSSSVSPKMFKKSLG-KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLIT  119

Query  434  RSFYGGQLVQQIKSKECPHISERLEPFSAIQCEIKGR------ASLEESLQAYVEGEIMQ  487
              F  GQL  ++K   C  +SE  EPFS +   I G       ASL+     + + E + 
Sbjct  120  DLF-RGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELD  178

Query  488  GDNKYSCTSCGRHVDAVKRACLKEVPDNLIFHLKRFDFDMITMMRSKINDEFRFPEHIDM  547
             + KY C  CG   DA+K+  +  +P  LI HLKRF ++       K+N E  FP  +D+
Sbjct  179  DEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYN--RSTWEKLNTEVEFPLELDL  236

Query  548  SPFKVEYLSDQNSNVPEDVFKLVGVLVHSGTAESGHYYSYIRERPNAGGRGSWVEFNDSD  607
            S +  E L  + +N+ +  ++LV V+VHSG+  SGHY +YI+   N      W +F+D  
Sbjct  237  SRYLAEELKPKTNNLQD--YRLVAVVVHSGSLSSGHYIAYIKAYEN----NRWYKFDDEK  290

Query  608  VSRFDPSKIADQCFGGYNDSVHPANVNQVRFNKVWNAYMLFY  649
            V+  D                              +AY+LFY
Sbjct  291  VTEVDEETA----------------------VLSSSAYILFY  310



Lambda      K        H        a         alpha
   0.321    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1573560226


Query= TCONS_00017779

Length=2538
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF351...  461     8e-147
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      211     2e-61 


>CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF3517).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is about 340 amino acids 
in length. This domain is found associated with pfam00443.
Length=407

 Score = 461 bits (1188),  Expect = 8e-147, Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 229/413 (55%), Gaps = 15/413 (4%)

Query  2071  SAGIRNLVLRSPHASVRDSTIKVIMRALERLQE---LRDEAHLDERAKEKWHMRYLDGFE  2127
                +R L+LR+P A VR +  K+I+ AL +L+E   L D     +  +E+W        E
Sbjct  1     PEALRELLLRNPDAEVRSAFGKLIVFALHKLKELYGLPDGPCDPDDLEEEWRSLSDSVLE  60

Query  2128  NVVATLDGLWPVLHTTSRSWDDYFTFLISLAKLGSYETEMILNSGFLLKCLEIVWLDGED  2187
              VVA LD LW   HT  RSWD+YF  L+S A LG  E   +L+ GFLLKCLEI+  D  D
Sbjct  61    AVVALLDHLWKEFHTHLRSWDEYFGLLLSYANLGPREVAQLLDLGFLLKCLEIIAADEGD  120

Query  2188  SKRLKRQYLSYCRLVEKGRKFSHRRLMELLAFLLTKVDLTVAPTSDDERR-----SLPNG  2242
                LK QY    RLVEK R  S+ +L++LL+ LL   DL++ P S +E       SLP+G
Sbjct  121   GPPLKYQYARMLRLVEKRRPPSYEKLIQLLSVLLRCCDLSLPPQSINEGAEPLPNSLPDG  180

Query  2243  KFSLTITENVFVRSLGRDRELSLLKKILHTNHNPHASMAIVELLLDSEPEAGLMDPLCKV  2302
              F LT  E   +R LGR      +KK+L  + NP A+  I+  LL   PE  L D + K 
Sbjct  181   PFPLTSEEADLLRPLGRTNGSIFVKKLLEIDQNPEATRKILRFLLWENPE--LSDSILKT  238

Query  2303  LEDGLRVEPAELCA-PFLEATLILCQRSPDENRIVALIDFVAKGIESINDSGGREHLAFF  2361
             L  G+R  PA L   PFL A ++ C+ S   +RI  LID VAK  +S+N++ GR  L FF
Sbjct  239   LLWGIRGAPAHLLRDPFLRAAIVFCEDSWQAHRIHNLIDHVAKQADSLNNTEGRAFLHFF  298

Query  2362  TSLLTSRNERLGLEKNWFLAQIVDKIPDWAPTLLIFPDRTVRNTTLALLHQILFSVEAED  2421
                    N RLG +K WF +Q+++ IPDWAP LL +PD  VR+ T   L + LFS E   
Sbjct  299   KRAYQCINCRLGFDKEWFASQVLENIPDWAPPLLSYPDSNVRSETEDFLQEELFSHE---  355

Query  2422  MGPDWQSRHAEIVKELVRNSVEKLRKTFLTGSVNNVEARVIESVKAVIDHCLV  2474
             MGPD Q R  E  + L    +E LR T++    + VE   +E+++ VI+ C  
Sbjct  356   MGPDPQFRLREAARRLGIACLEYLRGTYVL-RRSQVERSAVETLQRVIELCPE  407


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 211 bits (540),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 101/342 (30%), Positives = 152/342 (44%), Gaps = 47/342 (14%)

Query  1616  AGLKNLSNTCYLNSLLTQLFMNVQFRDFMLQLH----LSDPDTSQRLLAETKKLFAYMQE  1671
              GL NL NTCY+NS+L  LF    FRD++L++      S  +    LL   + LF  +Q+
Sbjct  1     TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  1672  -TWLRNVDPQGLVDNIRTYDNEPIDVTIQMDVDEFYNLLFDRWEAQITGAEDKKK----F  1726
              +   +V P+    ++    N       Q D  EF   L D     + G    +      
Sbjct  61    NSKSSSVSPKMFKKSLG-KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLIT  119

Query  1727  RSFYGGQLVQQIKSKECPHISERLEPFSAIQCEIKGR------ASLEESLQAYVEGEIMQ  1780
               F  GQL  ++K   C  +SE  EPFS +   I G       ASL+     + + E + 
Sbjct  120   DLF-RGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELD  178

Query  1781  GDNKYSCTSCGRHVDAVKRACLKEVPDNLIFHLKRFDFDMITMMRSKINDEFRFPEHIDM  1840
              + KY C  CG   DA+K+  +  +P  LI HLKRF ++       K+N E  FP  +D+
Sbjct  179   DEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYN--RSTWEKLNTEVEFPLELDL  236

Query  1841  SPFKVEYLSDQNSNVPEDVFKLVGVLVHSGTAESGHYYSYIRERPNAGGRGSWVEFNDSD  1900
             S +  E L  + +N+ +  ++LV V+VHSG+  SGHY +YI+   N      W +F+D  
Sbjct  237   SRYLAEELKPKTNNLQD--YRLVAVVVHSGSLSSGHYIAYIKAYEN----NRWYKFDDEK  290

Query  1901  VSRFDPSKIADQCFGGYNDSVHPANVNQVRFNKVWNAYMLFY  1942
             V+  D                              +AY+LFY
Sbjct  291   VTEVDEETA----------------------VLSSSAYILFY  310



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3162044928


Query= TCONS_00017778

Length=2519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF351...  460     1e-146
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      211     4e-61 


>CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF3517).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is about 340 amino acids 
in length. This domain is found associated with pfam00443.
Length=407

 Score = 460 bits (1187),  Expect = 1e-146, Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 229/413 (55%), Gaps = 15/413 (4%)

Query  2073  SAGIRNLVLRSPHASVRDSTIKVIMRALERLQE---LRDEAHLDERAKEKWHMRYLDGFE  2129
                +R L+LR+P A VR +  K+I+ AL +L+E   L D     +  +E+W        E
Sbjct  1     PEALRELLLRNPDAEVRSAFGKLIVFALHKLKELYGLPDGPCDPDDLEEEWRSLSDSVLE  60

Query  2130  NVVATLDGLWPVLHTTSRSWDDYFTFLISLAKLGSYETEMILNSGFLLKCLEIVWLDGED  2189
              VVA LD LW   HT  RSWD+YF  L+S A LG  E   +L+ GFLLKCLEI+  D  D
Sbjct  61    AVVALLDHLWKEFHTHLRSWDEYFGLLLSYANLGPREVAQLLDLGFLLKCLEIIAADEGD  120

Query  2190  SKRLKRQYLSYCRLVEKGRKFSHRRLMELLAFLLTKVDLTVAPTSDDERR-----SLPNG  2244
                LK QY    RLVEK R  S+ +L++LL+ LL   DL++ P S +E       SLP+G
Sbjct  121   GPPLKYQYARMLRLVEKRRPPSYEKLIQLLSVLLRCCDLSLPPQSINEGAEPLPNSLPDG  180

Query  2245  KFSLTITENVFVRSLGRDRELSLLKKILHTNHNPHASMAIVELLLDSEPEAGLMDPLCKV  2304
              F LT  E   +R LGR      +KK+L  + NP A+  I+  LL   PE  L D + K 
Sbjct  181   PFPLTSEEADLLRPLGRTNGSIFVKKLLEIDQNPEATRKILRFLLWENPE--LSDSILKT  238

Query  2305  LEDGLRVEPAELCA-PFLEATLILCQRSPDENRIVALIDFVAKGIESINDSGGREHLAFF  2363
             L  G+R  PA L   PFL A ++ C+ S   +RI  LID VAK  +S+N++ GR  L FF
Sbjct  239   LLWGIRGAPAHLLRDPFLRAAIVFCEDSWQAHRIHNLIDHVAKQADSLNNTEGRAFLHFF  298

Query  2364  TSLLTSRNERLGLEKNWFLAQIVDKIPDWAPTLLIFPDRTVRNTTLALLHQILFSVEAED  2423
                    N RLG +K WF +Q+++ IPDWAP LL +PD  VR+ T   L + LFS E   
Sbjct  299   KRAYQCINCRLGFDKEWFASQVLENIPDWAPPLLSYPDSNVRSETEDFLQEELFSHE---  355

Query  2424  MGPDWQSRHAEIVKELVRNSVEKLRKTFLTGSVNNVEARVIESVKAVIDHCLV  2476
             MGPD Q R  E  + L    +E LR T++    + VE   +E+++ VI+ C  
Sbjct  356   MGPDPQFRLREAARRLGIACLEYLRGTYVL-RRSQVERSAVETLQRVIELCPE  407


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 211 bits (538),  Expect = 4e-61, Method: Composition-based stats.
 Identities = 101/342 (30%), Positives = 152/342 (44%), Gaps = 47/342 (14%)

Query  1618  AGLKNLSNTCYLNSLLTQLFMNVQFRDFMLQLH----LSDPDTSQRLLAETKKLFAYMQE  1673
              GL NL NTCY+NS+L  LF    FRD++L++      S  +    LL   + LF  +Q+
Sbjct  1     TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  1674  -TWLRNVDPQGLVDNIRTYDNEPIDVTIQMDVDEFYNLLFDRWEAQITGAEDKKK----F  1728
              +   +V P+    ++    N       Q D  EF   L D     + G    +      
Sbjct  61    NSKSSSVSPKMFKKSLG-KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLIT  119

Query  1729  RSFYGGQLVQQIKSKECPHISERLEPFSAIQCEIKGR------ASLEESLQAYVEGEIMQ  1782
               F  GQL  ++K   C  +SE  EPFS +   I G       ASL+     + + E + 
Sbjct  120   DLF-RGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELD  178

Query  1783  GDNKYSCTSCGRHVDAVKRACLKEVPDNLIFHLKRFDFDMITMMRSKINDEFRFPEHIDM  1842
              + KY C  CG   DA+K+  +  +P  LI HLKRF ++       K+N E  FP  +D+
Sbjct  179   DEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYN--RSTWEKLNTEVEFPLELDL  236

Query  1843  SPFKVEYLSDQNSNVPEDVFKLVGVLVHSGTAESGHYYSYIRERPNAGGRGSWVEFNDSD  1902
             S +  E L  + +N+ +  ++LV V+VHSG+  SGHY +YI+   N      W +F+D  
Sbjct  237   SRYLAEELKPKTNNLQD--YRLVAVVVHSGSLSSGHYIAYIKAYEN----NRWYKFDDEK  290

Query  1903  VSRFDPSKIADQCFGGYNDSVHPANVNQVRFNKVWNAYMLFY  1944
             V+  D                              +AY+LFY
Sbjct  291   VTEVDEETA----------------------VLSSSAYILFY  310



Lambda      K        H        a         alpha
   0.319    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3137382016


Query= TCONS_00011573

Length=698
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF351...  457     1e-156
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      93.3    3e-21 


>CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF3517).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is about 340 amino acids 
in length. This domain is found associated with pfam00443.
Length=407

 Score = 457 bits (1177),  Expect = 1e-156, Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 229/413 (55%), Gaps = 15/413 (4%)

Query  252  SAGIRNLVLRSPHASVRDSTIKVIMRALERLQE---LRDEAHLDERAKEKWHMRYLDGFE  308
               +R L+LR+P A VR +  K+I+ AL +L+E   L D     +  +E+W        E
Sbjct  1    PEALRELLLRNPDAEVRSAFGKLIVFALHKLKELYGLPDGPCDPDDLEEEWRSLSDSVLE  60

Query  309  NVVATLDGLWPVLHTTSRSWDDYFTFLISLAKLGSYETEMILNSGFLLKCLEIVWLDGED  368
             VVA LD LW   HT  RSWD+YF  L+S A LG  E   +L+ GFLLKCLEI+  D  D
Sbjct  61   AVVALLDHLWKEFHTHLRSWDEYFGLLLSYANLGPREVAQLLDLGFLLKCLEIIAADEGD  120

Query  369  SKRLKRQYLSYCRLVEKGRKFSHRRLMELLAFLLTKVDLTVAPTSDDERR-----SLPNG  423
               LK QY    RLVEK R  S+ +L++LL+ LL   DL++ P S +E       SLP+G
Sbjct  121  GPPLKYQYARMLRLVEKRRPPSYEKLIQLLSVLLRCCDLSLPPQSINEGAEPLPNSLPDG  180

Query  424  KFSLTITENVFVRSLGRDRELSLLKKILHTNHNPHASMAIVELLLDSEPEAGLMDPLCKV  483
             F LT  E   +R LGR      +KK+L  + NP A+  I+  LL   PE  L D + K 
Sbjct  181  PFPLTSEEADLLRPLGRTNGSIFVKKLLEIDQNPEATRKILRFLLWENPE--LSDSILKT  238

Query  484  LEDGLRVEPAELCA-PFLEATLILCQRSPDENRIVALIDFVAKGIESINDSGGREHLAFF  542
            L  G+R  PA L   PFL A ++ C+ S   +RI  LID VAK  +S+N++ GR  L FF
Sbjct  239  LLWGIRGAPAHLLRDPFLRAAIVFCEDSWQAHRIHNLIDHVAKQADSLNNTEGRAFLHFF  298

Query  543  TSLLTSRNERLGLEKNWFLAQIVDKIPDWAPTLLIFPDRTVRNTTLALLHQILFSVEAED  602
                   N RLG +K WF +Q+++ IPDWAP LL +PD  VR+ T   L + LFS E   
Sbjct  299  KRAYQCINCRLGFDKEWFASQVLENIPDWAPPLLSYPDSNVRSETEDFLQEELFSHE---  355

Query  603  MGPDWQSRHAEIVKELVRNSVEKLRKTFLTGSVNNVEARVIESVKAVIDHCLV  655
            MGPD Q R  E  + L    +E LR T++    + VE   +E+++ VI+ C  
Sbjct  356  MGPDPQFRLREAARRLGIACLEYLRGTYVL-RRSQVERSAVETLQRVIELCPE  407


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 93.3 bits (232),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 28/120 (23%)

Query  4    MMRSKINDEFRFPEHIDMSPFKVEYLSDQNSNVPEDVFKLVGVLVHSGTAESGHYYSYIR  63
                K+N E  FP  +D+S +  E L  + +N+ +  ++LV V+VHSG+  SGHY +YI+
Sbjct  219  STWEKLNTEVEFPLELDLSRYLAEELKPKTNNLQD--YRLVAVVVHSGSLSSGHYIAYIK  276

Query  64   ERPNAGGRGSWVEFNDSDVSRFDPSKIADQCFGGYNDSVHPANVNQVRFNKVWNAYMLFY  123
               N      W +F+D  V+  D                              +AY+LFY
Sbjct  277  AYEN----NRWYKFDDEKVTEVDEETA----------------------VLSSSAYILFY  310



Lambda      K        H        a         alpha
   0.321    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0816    0.140     1.90     42.6     43.6 

Effective search space used: 892247950


Query= TCONS_00017780

Length=698
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF351...  457     1e-156
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      93.3    3e-21 


>CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF3517).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is about 340 amino acids 
in length. This domain is found associated with pfam00443.
Length=407

 Score = 457 bits (1177),  Expect = 1e-156, Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 229/413 (55%), Gaps = 15/413 (4%)

Query  252  SAGIRNLVLRSPHASVRDSTIKVIMRALERLQE---LRDEAHLDERAKEKWHMRYLDGFE  308
               +R L+LR+P A VR +  K+I+ AL +L+E   L D     +  +E+W        E
Sbjct  1    PEALRELLLRNPDAEVRSAFGKLIVFALHKLKELYGLPDGPCDPDDLEEEWRSLSDSVLE  60

Query  309  NVVATLDGLWPVLHTTSRSWDDYFTFLISLAKLGSYETEMILNSGFLLKCLEIVWLDGED  368
             VVA LD LW   HT  RSWD+YF  L+S A LG  E   +L+ GFLLKCLEI+  D  D
Sbjct  61   AVVALLDHLWKEFHTHLRSWDEYFGLLLSYANLGPREVAQLLDLGFLLKCLEIIAADEGD  120

Query  369  SKRLKRQYLSYCRLVEKGRKFSHRRLMELLAFLLTKVDLTVAPTSDDERR-----SLPNG  423
               LK QY    RLVEK R  S+ +L++LL+ LL   DL++ P S +E       SLP+G
Sbjct  121  GPPLKYQYARMLRLVEKRRPPSYEKLIQLLSVLLRCCDLSLPPQSINEGAEPLPNSLPDG  180

Query  424  KFSLTITENVFVRSLGRDRELSLLKKILHTNHNPHASMAIVELLLDSEPEAGLMDPLCKV  483
             F LT  E   +R LGR      +KK+L  + NP A+  I+  LL   PE  L D + K 
Sbjct  181  PFPLTSEEADLLRPLGRTNGSIFVKKLLEIDQNPEATRKILRFLLWENPE--LSDSILKT  238

Query  484  LEDGLRVEPAELCA-PFLEATLILCQRSPDENRIVALIDFVAKGIESINDSGGREHLAFF  542
            L  G+R  PA L   PFL A ++ C+ S   +RI  LID VAK  +S+N++ GR  L FF
Sbjct  239  LLWGIRGAPAHLLRDPFLRAAIVFCEDSWQAHRIHNLIDHVAKQADSLNNTEGRAFLHFF  298

Query  543  TSLLTSRNERLGLEKNWFLAQIVDKIPDWAPTLLIFPDRTVRNTTLALLHQILFSVEAED  602
                   N RLG +K WF +Q+++ IPDWAP LL +PD  VR+ T   L + LFS E   
Sbjct  299  KRAYQCINCRLGFDKEWFASQVLENIPDWAPPLLSYPDSNVRSETEDFLQEELFSHE---  355

Query  603  MGPDWQSRHAEIVKELVRNSVEKLRKTFLTGSVNNVEARVIESVKAVIDHCLV  655
            MGPD Q R  E  + L    +E LR T++    + VE   +E+++ VI+ C  
Sbjct  356  MGPDPQFRLREAARRLGIACLEYLRGTYVL-RRSQVERSAVETLQRVIELCPE  407


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 93.3 bits (232),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 28/120 (23%)

Query  4    MMRSKINDEFRFPEHIDMSPFKVEYLSDQNSNVPEDVFKLVGVLVHSGTAESGHYYSYIR  63
                K+N E  FP  +D+S +  E L  + +N+ +  ++LV V+VHSG+  SGHY +YI+
Sbjct  219  STWEKLNTEVEFPLELDLSRYLAEELKPKTNNLQD--YRLVAVVVHSGSLSSGHYIAYIK  276

Query  64   ERPNAGGRGSWVEFNDSDVSRFDPSKIADQCFGGYNDSVHPANVNQVRFNKVWNAYMLFY  123
               N      W +F+D  V+  D                              +AY+LFY
Sbjct  277  AYEN----NRWYKFDDEKVTEVDEETA----------------------VLSSSAYILFY  310



Lambda      K        H        a         alpha
   0.321    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 892247950


Query= TCONS_00017781

Length=924
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF351...  460     4e-155
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      207     9e-61 


>CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF3517).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is about 340 amino acids 
in length. This domain is found associated with pfam00443.
Length=407

 Score = 460 bits (1186),  Expect = 4e-155, Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 229/413 (55%), Gaps = 15/413 (4%)

Query  464  SAGIRNLVLRSPHASVRDSTIKVIMRALERLQE---LRDEAHLDERAKEKWHMRYLDGFE  520
               +R L+LR+P A VR +  K+I+ AL +L+E   L D     +  +E+W        E
Sbjct  1    PEALRELLLRNPDAEVRSAFGKLIVFALHKLKELYGLPDGPCDPDDLEEEWRSLSDSVLE  60

Query  521  NVVATLDGLWPVLHTTSRSWDDYFTFLISLAKLGSYETEMILNSGFLLKCLEIVWLDGED  580
             VVA LD LW   HT  RSWD+YF  L+S A LG  E   +L+ GFLLKCLEI+  D  D
Sbjct  61   AVVALLDHLWKEFHTHLRSWDEYFGLLLSYANLGPREVAQLLDLGFLLKCLEIIAADEGD  120

Query  581  SKRLKRQYLSYCRLVEKGRKFSHRRLMELLAFLLTKVDLTVAPTSDDERR-----SLPNG  635
               LK QY    RLVEK R  S+ +L++LL+ LL   DL++ P S +E       SLP+G
Sbjct  121  GPPLKYQYARMLRLVEKRRPPSYEKLIQLLSVLLRCCDLSLPPQSINEGAEPLPNSLPDG  180

Query  636  KFSLTITENVFVRSLGRDRELSLLKKILHTNHNPHASMAIVELLLDSEPEAGLMDPLCKV  695
             F LT  E   +R LGR      +KK+L  + NP A+  I+  LL   PE  L D + K 
Sbjct  181  PFPLTSEEADLLRPLGRTNGSIFVKKLLEIDQNPEATRKILRFLLWENPE--LSDSILKT  238

Query  696  LEDGLRVEPAELCA-PFLEATLILCQRSPDENRIVALIDFVAKGIESINDSGGREHLAFF  754
            L  G+R  PA L   PFL A ++ C+ S   +RI  LID VAK  +S+N++ GR  L FF
Sbjct  239  LLWGIRGAPAHLLRDPFLRAAIVFCEDSWQAHRIHNLIDHVAKQADSLNNTEGRAFLHFF  298

Query  755  TSLLTSRNERLGLEKNWFLAQIVDKIPDWAPTLLIFPDRTVRNTTLALLHQILFSVEAED  814
                   N RLG +K WF +Q+++ IPDWAP LL +PD  VR+ T   L + LFS E   
Sbjct  299  KRAYQCINCRLGFDKEWFASQVLENIPDWAPPLLSYPDSNVRSETEDFLQEELFSHE---  355

Query  815  MGPDWQSRHAEIVKELVRNSVEKLRKTFLTGSVNNVEARVIESVKAVIDHCLV  867
            MGPD Q R  E  + L    +E LR T++    + VE   +E+++ VI+ C  
Sbjct  356  MGPDPQFRLREAARRLGIACLEYLRGTYVL-RRSQVERSAVETLQRVIELCPE  407


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 207 bits (529),  Expect = 9e-61, Method: Composition-based stats.
 Identities = 101/342 (30%), Positives = 152/342 (44%), Gaps = 47/342 (14%)

Query  9    AGLKNLSNTCYLNSLLTQLFMNVQFRDFMLQLH----LSDPDTSQRLLAETKKLFAYMQE  64
             GL NL NTCY+NS+L  LF    FRD++L++      S  +    LL   + LF  +Q+
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  65   -TWLRNVDPQGLVDNIRTYDNEPIDVTIQMDVDEFYNLLFDRWEAQITGAEDKKK----F  119
             +   +V P+    ++    N       Q D  EF   L D     + G    +      
Sbjct  61   NSKSSSVSPKMFKKSLG-KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLIT  119

Query  120  RSFYGGQLVQQIKSKECPHISERLEPFSAIQCEIKGR------ASLEESLQAYVEGEIMQ  173
              F  GQL  ++K   C  +SE  EPFS +   I G       ASL+     + + E + 
Sbjct  120  DLF-RGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELD  178

Query  174  GDNKYSCTSCGRHVDAVKRACLKEVPDNLIFHLKRFDFDMITMMRSKINDEFRFPEHIDM  233
             + KY C  CG   DA+K+  +  +P  LI HLKRF ++       K+N E  FP  +D+
Sbjct  179  DEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYN--RSTWEKLNTEVEFPLELDL  236

Query  234  SPFKVEYLSDQNSNVPEDVFKLVGVLVHSGTAESGHYYSYIRERPNAGGRGSWVEFNDSD  293
            S +  E L  + +N+ +  ++LV V+VHSG+  SGHY +YI+   N      W +F+D  
Sbjct  237  SRYLAEELKPKTNNLQD--YRLVAVVVHSGSLSSGHYIAYIKAYEN----NRWYKFDDEK  290

Query  294  VSRFDPSKIADQCFGGYNDSVHPANVNQVRFNKVWNAYMLFY  335
            V+  D                              +AY+LFY
Sbjct  291  VTEVDEETA----------------------VLSSSAYILFY  310



Lambda      K        H        a         alpha
   0.320    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1190041106


Query= TCONS_00017782

Length=698
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF351...  457     1e-156
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      93.3    3e-21 


>CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF3517).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is about 340 amino acids 
in length. This domain is found associated with pfam00443.
Length=407

 Score = 457 bits (1177),  Expect = 1e-156, Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 229/413 (55%), Gaps = 15/413 (4%)

Query  252  SAGIRNLVLRSPHASVRDSTIKVIMRALERLQE---LRDEAHLDERAKEKWHMRYLDGFE  308
               +R L+LR+P A VR +  K+I+ AL +L+E   L D     +  +E+W        E
Sbjct  1    PEALRELLLRNPDAEVRSAFGKLIVFALHKLKELYGLPDGPCDPDDLEEEWRSLSDSVLE  60

Query  309  NVVATLDGLWPVLHTTSRSWDDYFTFLISLAKLGSYETEMILNSGFLLKCLEIVWLDGED  368
             VVA LD LW   HT  RSWD+YF  L+S A LG  E   +L+ GFLLKCLEI+  D  D
Sbjct  61   AVVALLDHLWKEFHTHLRSWDEYFGLLLSYANLGPREVAQLLDLGFLLKCLEIIAADEGD  120

Query  369  SKRLKRQYLSYCRLVEKGRKFSHRRLMELLAFLLTKVDLTVAPTSDDERR-----SLPNG  423
               LK QY    RLVEK R  S+ +L++LL+ LL   DL++ P S +E       SLP+G
Sbjct  121  GPPLKYQYARMLRLVEKRRPPSYEKLIQLLSVLLRCCDLSLPPQSINEGAEPLPNSLPDG  180

Query  424  KFSLTITENVFVRSLGRDRELSLLKKILHTNHNPHASMAIVELLLDSEPEAGLMDPLCKV  483
             F LT  E   +R LGR      +KK+L  + NP A+  I+  LL   PE  L D + K 
Sbjct  181  PFPLTSEEADLLRPLGRTNGSIFVKKLLEIDQNPEATRKILRFLLWENPE--LSDSILKT  238

Query  484  LEDGLRVEPAELCA-PFLEATLILCQRSPDENRIVALIDFVAKGIESINDSGGREHLAFF  542
            L  G+R  PA L   PFL A ++ C+ S   +RI  LID VAK  +S+N++ GR  L FF
Sbjct  239  LLWGIRGAPAHLLRDPFLRAAIVFCEDSWQAHRIHNLIDHVAKQADSLNNTEGRAFLHFF  298

Query  543  TSLLTSRNERLGLEKNWFLAQIVDKIPDWAPTLLIFPDRTVRNTTLALLHQILFSVEAED  602
                   N RLG +K WF +Q+++ IPDWAP LL +PD  VR+ T   L + LFS E   
Sbjct  299  KRAYQCINCRLGFDKEWFASQVLENIPDWAPPLLSYPDSNVRSETEDFLQEELFSHE---  355

Query  603  MGPDWQSRHAEIVKELVRNSVEKLRKTFLTGSVNNVEARVIESVKAVIDHCLV  655
            MGPD Q R  E  + L    +E LR T++    + VE   +E+++ VI+ C  
Sbjct  356  MGPDPQFRLREAARRLGIACLEYLRGTYVL-RRSQVERSAVETLQRVIELCPE  407


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 93.3 bits (232),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 28/120 (23%)

Query  4    MMRSKINDEFRFPEHIDMSPFKVEYLSDQNSNVPEDVFKLVGVLVHSGTAESGHYYSYIR  63
                K+N E  FP  +D+S +  E L  + +N+ +  ++LV V+VHSG+  SGHY +YI+
Sbjct  219  STWEKLNTEVEFPLELDLSRYLAEELKPKTNNLQD--YRLVAVVVHSGSLSSGHYIAYIK  276

Query  64   ERPNAGGRGSWVEFNDSDVSRFDPSKIADQCFGGYNDSVHPANVNQVRFNKVWNAYMLFY  123
               N      W +F+D  V+  D                              +AY+LFY
Sbjct  277  AYEN----NRWYKFDDEKVTEVDEETA----------------------VLSSSAYILFY  310



Lambda      K        H        a         alpha
   0.321    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 892247950


Query= TCONS_00011574

Length=921
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF351...  459     6e-155
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      206     1e-60 


>CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF3517).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is about 340 amino acids 
in length. This domain is found associated with pfam00443.
Length=407

 Score = 459 bits (1184),  Expect = 6e-155, Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 229/413 (55%), Gaps = 15/413 (4%)

Query  464  SAGIRNLVLRSPHASVRDSTIKVIMRALERLQE---LRDEAHLDERAKEKWHMRYLDGFE  520
               +R L+LR+P A VR +  K+I+ AL +L+E   L D     +  +E+W        E
Sbjct  1    PEALRELLLRNPDAEVRSAFGKLIVFALHKLKELYGLPDGPCDPDDLEEEWRSLSDSVLE  60

Query  521  NVVATLDGLWPVLHTTSRSWDDYFTFLISLAKLGSYETEMILNSGFLLKCLEIVWLDGED  580
             VVA LD LW   HT  RSWD+YF  L+S A LG  E   +L+ GFLLKCLEI+  D  D
Sbjct  61   AVVALLDHLWKEFHTHLRSWDEYFGLLLSYANLGPREVAQLLDLGFLLKCLEIIAADEGD  120

Query  581  SKRLKRQYLSYCRLVEKGRKFSHRRLMELLAFLLTKVDLTVAPTSDDERR-----SLPNG  635
               LK QY    RLVEK R  S+ +L++LL+ LL   DL++ P S +E       SLP+G
Sbjct  121  GPPLKYQYARMLRLVEKRRPPSYEKLIQLLSVLLRCCDLSLPPQSINEGAEPLPNSLPDG  180

Query  636  KFSLTITENVFVRSLGRDRELSLLKKILHTNHNPHASMAIVELLLDSEPEAGLMDPLCKV  695
             F LT  E   +R LGR      +KK+L  + NP A+  I+  LL   PE  L D + K 
Sbjct  181  PFPLTSEEADLLRPLGRTNGSIFVKKLLEIDQNPEATRKILRFLLWENPE--LSDSILKT  238

Query  696  LEDGLRVEPAELCA-PFLEATLILCQRSPDENRIVALIDFVAKGIESINDSGGREHLAFF  754
            L  G+R  PA L   PFL A ++ C+ S   +RI  LID VAK  +S+N++ GR  L FF
Sbjct  239  LLWGIRGAPAHLLRDPFLRAAIVFCEDSWQAHRIHNLIDHVAKQADSLNNTEGRAFLHFF  298

Query  755  TSLLTSRNERLGLEKNWFLAQIVDKIPDWAPTLLIFPDRTVRNTTLALLHQILFSVEAED  814
                   N RLG +K WF +Q+++ IPDWAP LL +PD  VR+ T   L + LFS E   
Sbjct  299  KRAYQCINCRLGFDKEWFASQVLENIPDWAPPLLSYPDSNVRSETEDFLQEELFSHE---  355

Query  815  MGPDWQSRHAEIVKELVRNSVEKLRKTFLTGSVNNVEARVIESVKAVIDHCLV  867
            MGPD Q R  E  + L    +E LR T++    + VE   +E+++ VI+ C  
Sbjct  356  MGPDPQFRLREAARRLGIACLEYLRGTYVL-RRSQVERSAVETLQRVIELCPE  407


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 206 bits (527),  Expect = 1e-60, Method: Composition-based stats.
 Identities = 101/342 (30%), Positives = 152/342 (44%), Gaps = 47/342 (14%)

Query  9    AGLKNLSNTCYLNSLLTQLFMNVQFRDFMLQLH----LSDPDTSQRLLAETKKLFAYMQE  64
             GL NL NTCY+NS+L  LF    FRD++L++      S  +    LL   + LF  +Q+
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  65   -TWLRNVDPQGLVDNIRTYDNEPIDVTIQMDVDEFYNLLFDRWEAQITGAEDKKK----F  119
             +   +V P+    ++    N       Q D  EF   L D     + G    +      
Sbjct  61   NSKSSSVSPKMFKKSLG-KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLIT  119

Query  120  RSFYGGQLVQQIKSKECPHISERLEPFSAIQCEIKGR------ASLEESLQAYVEGEIMQ  173
              F  GQL  ++K   C  +SE  EPFS +   I G       ASL+     + + E + 
Sbjct  120  DLF-RGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELD  178

Query  174  GDNKYSCTSCGRHVDAVKRACLKEVPDNLIFHLKRFDFDMITMMRSKINDEFRFPEHIDM  233
             + KY C  CG   DA+K+  +  +P  LI HLKRF ++       K+N E  FP  +D+
Sbjct  179  DEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYN--RSTWEKLNTEVEFPLELDL  236

Query  234  SPFKVEYLSDQNSNVPEDVFKLVGVLVHSGTAESGHYYSYIRERPNAGGRGSWVEFNDSD  293
            S +  E L  + +N+ +  ++LV V+VHSG+  SGHY +YI+   N      W +F+D  
Sbjct  237  SRYLAEELKPKTNNLQD--YRLVAVVVHSGSLSSGHYIAYIKAYEN----NRWYKFDDEK  290

Query  294  VSRFDPSKIADQCFGGYNDSVHPANVNQVRFNKVWNAYMLFY  335
            V+  D                              +AY+LFY
Sbjct  291  VTEVDEETA----------------------VLSSSAYILFY  310



Lambda      K        H        a         alpha
   0.320    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1185734564


Query= TCONS_00011575

Length=2531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF351...  461     8e-147
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      211     3e-61 


>CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF3517).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is about 340 amino acids 
in length. This domain is found associated with pfam00443.
Length=407

 Score = 461 bits (1188),  Expect = 8e-147, Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 229/413 (55%), Gaps = 15/413 (4%)

Query  2071  SAGIRNLVLRSPHASVRDSTIKVIMRALERLQE---LRDEAHLDERAKEKWHMRYLDGFE  2127
                +R L+LR+P A VR +  K+I+ AL +L+E   L D     +  +E+W        E
Sbjct  1     PEALRELLLRNPDAEVRSAFGKLIVFALHKLKELYGLPDGPCDPDDLEEEWRSLSDSVLE  60

Query  2128  NVVATLDGLWPVLHTTSRSWDDYFTFLISLAKLGSYETEMILNSGFLLKCLEIVWLDGED  2187
              VVA LD LW   HT  RSWD+YF  L+S A LG  E   +L+ GFLLKCLEI+  D  D
Sbjct  61    AVVALLDHLWKEFHTHLRSWDEYFGLLLSYANLGPREVAQLLDLGFLLKCLEIIAADEGD  120

Query  2188  SKRLKRQYLSYCRLVEKGRKFSHRRLMELLAFLLTKVDLTVAPTSDDERR-----SLPNG  2242
                LK QY    RLVEK R  S+ +L++LL+ LL   DL++ P S +E       SLP+G
Sbjct  121   GPPLKYQYARMLRLVEKRRPPSYEKLIQLLSVLLRCCDLSLPPQSINEGAEPLPNSLPDG  180

Query  2243  KFSLTITENVFVRSLGRDRELSLLKKILHTNHNPHASMAIVELLLDSEPEAGLMDPLCKV  2302
              F LT  E   +R LGR      +KK+L  + NP A+  I+  LL   PE  L D + K 
Sbjct  181   PFPLTSEEADLLRPLGRTNGSIFVKKLLEIDQNPEATRKILRFLLWENPE--LSDSILKT  238

Query  2303  LEDGLRVEPAELCA-PFLEATLILCQRSPDENRIVALIDFVAKGIESINDSGGREHLAFF  2361
             L  G+R  PA L   PFL A ++ C+ S   +RI  LID VAK  +S+N++ GR  L FF
Sbjct  239   LLWGIRGAPAHLLRDPFLRAAIVFCEDSWQAHRIHNLIDHVAKQADSLNNTEGRAFLHFF  298

Query  2362  TSLLTSRNERLGLEKNWFLAQIVDKIPDWAPTLLIFPDRTVRNTTLALLHQILFSVEAED  2421
                    N RLG +K WF +Q+++ IPDWAP LL +PD  VR+ T   L + LFS E   
Sbjct  299   KRAYQCINCRLGFDKEWFASQVLENIPDWAPPLLSYPDSNVRSETEDFLQEELFSHE---  355

Query  2422  MGPDWQSRHAEIVKELVRNSVEKLRKTFLTGSVNNVEARVIESVKAVIDHCLV  2474
             MGPD Q R  E  + L    +E LR T++    + VE   +E+++ VI+ C  
Sbjct  356   MGPDPQFRLREAARRLGIACLEYLRGTYVL-RRSQVERSAVETLQRVIELCPE  407


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 211 bits (539),  Expect = 3e-61, Method: Composition-based stats.
 Identities = 101/342 (30%), Positives = 152/342 (44%), Gaps = 47/342 (14%)

Query  1616  AGLKNLSNTCYLNSLLTQLFMNVQFRDFMLQLH----LSDPDTSQRLLAETKKLFAYMQE  1671
              GL NL NTCY+NS+L  LF    FRD++L++      S  +    LL   + LF  +Q+
Sbjct  1     TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  1672  -TWLRNVDPQGLVDNIRTYDNEPIDVTIQMDVDEFYNLLFDRWEAQITGAEDKKK----F  1726
              +   +V P+    ++    N       Q D  EF   L D     + G    +      
Sbjct  61    NSKSSSVSPKMFKKSLG-KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLIT  119

Query  1727  RSFYGGQLVQQIKSKECPHISERLEPFSAIQCEIKGR------ASLEESLQAYVEGEIMQ  1780
               F  GQL  ++K   C  +SE  EPFS +   I G       ASL+     + + E + 
Sbjct  120   DLF-RGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELD  178

Query  1781  GDNKYSCTSCGRHVDAVKRACLKEVPDNLIFHLKRFDFDMITMMRSKINDEFRFPEHIDM  1840
              + KY C  CG   DA+K+  +  +P  LI HLKRF ++       K+N E  FP  +D+
Sbjct  179   DEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYN--RSTWEKLNTEVEFPLELDL  236

Query  1841  SPFKVEYLSDQNSNVPEDVFKLVGVLVHSGTAESGHYYSYIRERPNAGGRGSWVEFNDSD  1900
             S +  E L  + +N+ +  ++LV V+VHSG+  SGHY +YI+   N      W +F+D  
Sbjct  237   SRYLAEELKPKTNNLQD--YRLVAVVVHSGSLSSGHYIAYIKAYEN----NRWYKFDDEK  290

Query  1901  VSRFDPSKIADQCFGGYNDSVHPANVNQVRFNKVWNAYMLFY  1942
             V+  D                              +AY+LFY
Sbjct  291   VTEVDEETA----------------------VLSSSAYILFY  310



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3152958592


Query= TCONS_00017783

Length=1101
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF351...  460     4e-153
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      206     8e-60 


>CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF3517).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is about 340 amino acids 
in length. This domain is found associated with pfam00443.
Length=407

 Score = 460 bits (1185),  Expect = 4e-153, Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 229/413 (55%), Gaps = 15/413 (4%)

Query  641   SAGIRNLVLRSPHASVRDSTIKVIMRALERLQE---LRDEAHLDERAKEKWHMRYLDGFE  697
                +R L+LR+P A VR +  K+I+ AL +L+E   L D     +  +E+W        E
Sbjct  1     PEALRELLLRNPDAEVRSAFGKLIVFALHKLKELYGLPDGPCDPDDLEEEWRSLSDSVLE  60

Query  698   NVVATLDGLWPVLHTTSRSWDDYFTFLISLAKLGSYETEMILNSGFLLKCLEIVWLDGED  757
              VVA LD LW   HT  RSWD+YF  L+S A LG  E   +L+ GFLLKCLEI+  D  D
Sbjct  61    AVVALLDHLWKEFHTHLRSWDEYFGLLLSYANLGPREVAQLLDLGFLLKCLEIIAADEGD  120

Query  758   SKRLKRQYLSYCRLVEKGRKFSHRRLMELLAFLLTKVDLTVAPTSDDERR-----SLPNG  812
                LK QY    RLVEK R  S+ +L++LL+ LL   DL++ P S +E       SLP+G
Sbjct  121   GPPLKYQYARMLRLVEKRRPPSYEKLIQLLSVLLRCCDLSLPPQSINEGAEPLPNSLPDG  180

Query  813   KFSLTITENVFVRSLGRDRELSLLKKILHTNHNPHASMAIVELLLDSEPEAGLMDPLCKV  872
              F LT  E   +R LGR      +KK+L  + NP A+  I+  LL   PE  L D + K 
Sbjct  181   PFPLTSEEADLLRPLGRTNGSIFVKKLLEIDQNPEATRKILRFLLWENPE--LSDSILKT  238

Query  873   LEDGLRVEPAELCA-PFLEATLILCQRSPDENRIVALIDFVAKGIESINDSGGREHLAFF  931
             L  G+R  PA L   PFL A ++ C+ S   +RI  LID VAK  +S+N++ GR  L FF
Sbjct  239   LLWGIRGAPAHLLRDPFLRAAIVFCEDSWQAHRIHNLIDHVAKQADSLNNTEGRAFLHFF  298

Query  932   TSLLTSRNERLGLEKNWFLAQIVDKIPDWAPTLLIFPDRTVRNTTLALLHQILFSVEAED  991
                    N RLG +K WF +Q+++ IPDWAP LL +PD  VR+ T   L + LFS E   
Sbjct  299   KRAYQCINCRLGFDKEWFASQVLENIPDWAPPLLSYPDSNVRSETEDFLQEELFSHE---  355

Query  992   MGPDWQSRHAEIVKELVRNSVEKLRKTFLTGSVNNVEARVIESVKAVIDHCLV  1044
             MGPD Q R  E  + L    +E LR T++    + VE   +E+++ VI+ C  
Sbjct  356   MGPDPQFRLREAARRLGIACLEYLRGTYVL-RRSQVERSAVETLQRVIELCPE  407


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 206 bits (525),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 101/342 (30%), Positives = 152/342 (44%), Gaps = 47/342 (14%)

Query  186  AGLKNLSNTCYLNSLLTQLFMNVQFRDFMLQLH----LSDPDTSQRLLAETKKLFAYMQE  241
             GL NL NTCY+NS+L  LF    FRD++L++      S  +    LL   + LF  +Q+
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  242  -TWLRNVDPQGLVDNIRTYDNEPIDVTIQMDVDEFYNLLFDRWEAQITGAEDKKK----F  296
             +   +V P+    ++    N       Q D  EF   L D     + G    +      
Sbjct  61   NSKSSSVSPKMFKKSLG-KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLIT  119

Query  297  RSFYGGQLVQQIKSKECPHISERLEPFSAIQCEIKGR------ASLEESLQAYVEGEIMQ  350
              F  GQL  ++K   C  +SE  EPFS +   I G       ASL+     + + E + 
Sbjct  120  DLF-RGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELD  178

Query  351  GDNKYSCTSCGRHVDAVKRACLKEVPDNLIFHLKRFDFDMITMMRSKINDEFRFPEHIDM  410
             + KY C  CG   DA+K+  +  +P  LI HLKRF ++       K+N E  FP  +D+
Sbjct  179  DEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYN--RSTWEKLNTEVEFPLELDL  236

Query  411  SPFKVEYLSDQNSNVPEDVFKLVGVLVHSGTAESGHYYSYIRERPNAGGRGSWVEFNDSD  470
            S +  E L  + +N+ +  ++LV V+VHSG+  SGHY +YI+   N      W +F+D  
Sbjct  237  SRYLAEELKPKTNNLQD--YRLVAVVVHSGSLSSGHYIAYIKAYEN----NRWYKFDDEK  290

Query  471  VSRFDPSKIADQCFGGYNDSVHPANVNQVRFNKVWNAYMLFY  512
            V+  D                              +AY+LFY
Sbjct  291  VTEVDEETA----------------------VLSSSAYILFY  310



Lambda      K        H        a         alpha
   0.321    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1401822952


Query= TCONS_00017784

Length=910
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF351...  459     5e-155
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      206     2e-60 


>CDD:463438 pfam12030, DUF3517, Domain of unknown function (DUF3517).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is about 340 amino acids 
in length. This domain is found associated with pfam00443.
Length=407

 Score = 459 bits (1184),  Expect = 5e-155, Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 229/413 (55%), Gaps = 15/413 (4%)

Query  464  SAGIRNLVLRSPHASVRDSTIKVIMRALERLQE---LRDEAHLDERAKEKWHMRYLDGFE  520
               +R L+LR+P A VR +  K+I+ AL +L+E   L D     +  +E+W        E
Sbjct  1    PEALRELLLRNPDAEVRSAFGKLIVFALHKLKELYGLPDGPCDPDDLEEEWRSLSDSVLE  60

Query  521  NVVATLDGLWPVLHTTSRSWDDYFTFLISLAKLGSYETEMILNSGFLLKCLEIVWLDGED  580
             VVA LD LW   HT  RSWD+YF  L+S A LG  E   +L+ GFLLKCLEI+  D  D
Sbjct  61   AVVALLDHLWKEFHTHLRSWDEYFGLLLSYANLGPREVAQLLDLGFLLKCLEIIAADEGD  120

Query  581  SKRLKRQYLSYCRLVEKGRKFSHRRLMELLAFLLTKVDLTVAPTSDDERR-----SLPNG  635
               LK QY    RLVEK R  S+ +L++LL+ LL   DL++ P S +E       SLP+G
Sbjct  121  GPPLKYQYARMLRLVEKRRPPSYEKLIQLLSVLLRCCDLSLPPQSINEGAEPLPNSLPDG  180

Query  636  KFSLTITENVFVRSLGRDRELSLLKKILHTNHNPHASMAIVELLLDSEPEAGLMDPLCKV  695
             F LT  E   +R LGR      +KK+L  + NP A+  I+  LL   PE  L D + K 
Sbjct  181  PFPLTSEEADLLRPLGRTNGSIFVKKLLEIDQNPEATRKILRFLLWENPE--LSDSILKT  238

Query  696  LEDGLRVEPAELCA-PFLEATLILCQRSPDENRIVALIDFVAKGIESINDSGGREHLAFF  754
            L  G+R  PA L   PFL A ++ C+ S   +RI  LID VAK  +S+N++ GR  L FF
Sbjct  239  LLWGIRGAPAHLLRDPFLRAAIVFCEDSWQAHRIHNLIDHVAKQADSLNNTEGRAFLHFF  298

Query  755  TSLLTSRNERLGLEKNWFLAQIVDKIPDWAPTLLIFPDRTVRNTTLALLHQILFSVEAED  814
                   N RLG +K WF +Q+++ IPDWAP LL +PD  VR+ T   L + LFS E   
Sbjct  299  KRAYQCINCRLGFDKEWFASQVLENIPDWAPPLLSYPDSNVRSETEDFLQEELFSHE---  355

Query  815  MGPDWQSRHAEIVKELVRNSVEKLRKTFLTGSVNNVEARVIESVKAVIDHCLV  867
            MGPD Q R  E  + L    +E LR T++    + VE   +E+++ VI+ C  
Sbjct  356  MGPDPQFRLREAARRLGIACLEYLRGTYVL-RRSQVERSAVETLQRVIELCPE  407


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 206 bits (527),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 101/342 (30%), Positives = 152/342 (44%), Gaps = 47/342 (14%)

Query  9    AGLKNLSNTCYLNSLLTQLFMNVQFRDFMLQLH----LSDPDTSQRLLAETKKLFAYMQE  64
             GL NL NTCY+NS+L  LF    FRD++L++      S  +    LL   + LF  +Q+
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  65   -TWLRNVDPQGLVDNIRTYDNEPIDVTIQMDVDEFYNLLFDRWEAQITGAEDKKK----F  119
             +   +V P+    ++    N       Q D  EF   L D     + G    +      
Sbjct  61   NSKSSSVSPKMFKKSLG-KLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLIT  119

Query  120  RSFYGGQLVQQIKSKECPHISERLEPFSAIQCEIKGR------ASLEESLQAYVEGEIMQ  173
              F  GQL  ++K   C  +SE  EPFS +   I G       ASL+     + + E + 
Sbjct  120  DLF-RGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELD  178

Query  174  GDNKYSCTSCGRHVDAVKRACLKEVPDNLIFHLKRFDFDMITMMRSKINDEFRFPEHIDM  233
             + KY C  CG   DA+K+  +  +P  LI HLKRF ++       K+N E  FP  +D+
Sbjct  179  DEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYN--RSTWEKLNTEVEFPLELDL  236

Query  234  SPFKVEYLSDQNSNVPEDVFKLVGVLVHSGTAESGHYYSYIRERPNAGGRGSWVEFNDSD  293
            S +  E L  + +N+ +  ++LV V+VHSG+  SGHY +YI+   N      W +F+D  
Sbjct  237  SRYLAEELKPKTNNLQD--YRLVAVVVHSGSLSSGHYIAYIKAYEN----NRWYKFDDEK  290

Query  294  VSRFDPSKIADQCFGGYNDSVHPANVNQVRFNKVWNAYMLFY  335
            V+  D                              +AY+LFY
Sbjct  291  VTEVDEETA----------------------VLSSSAYILFY  310



Lambda      K        H        a         alpha
   0.321    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1169943910


Query= TCONS_00011578

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460204 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthas...  64.9    1e-13


>CDD:460204 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthase.  Involved 
in the formation of pseudouridine at the anticodon stem 
and loop of transfer-RNAs Pseudouridine is an isomer of uridine 
(5-(beta-D-ribofuranosyl) uracil, and id the most abundant 
modified nucleoside found in all cellular RNAs. The TruA-like 
proteins also exhibit a conserved sequence with a strictly 
conserved aspartic acid, likely involved in catalysis.
Length=108

 Score = 64.9 bits (159),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 45/111 (41%), Gaps = 12/111 (11%)

Query  167  KYVGTNNFYNYTIQKTYTDPSAKRFIKSFKVDRNPIIINGTEWLSLKVHGQSFMMHQIRK  226
             YVGT++F N+  Q      +  R I    V R          +  +V G  F+ H +R 
Sbjct  4    LYVGTHDFGNFCKQDQ-PKKNTVRTILEAAVSRVGGEDGD--LIVFEVRGSGFLDHMVRA  60

Query  227  MVAMATMLVRAGC------DPQRIVDSYGPTKIAIPKAPGLGLLLERPIFD  271
            MV +   L   G           ++++  P KIA P AP +GL L    + 
Sbjct  61   MVGV---LFLVGQGKEPPEWIAELLNAKDPRKIAGPTAPPVGLYLFHVRYP  108



Lambda      K        H        a         alpha
   0.314    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00011577

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460204 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthas...  64.9    2e-13


>CDD:460204 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthase.  Involved 
in the formation of pseudouridine at the anticodon stem 
and loop of transfer-RNAs Pseudouridine is an isomer of uridine 
(5-(beta-D-ribofuranosyl) uracil, and id the most abundant 
modified nucleoside found in all cellular RNAs. The TruA-like 
proteins also exhibit a conserved sequence with a strictly 
conserved aspartic acid, likely involved in catalysis.
Length=108

 Score = 64.9 bits (159),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 45/111 (41%), Gaps = 12/111 (11%)

Query  407  KYVGTNNFYNYTIQKTYTDPSAKRFIKSFKVDRNPIIINGTEWLSLKVHGQSFMMHQIRK  466
             YVGT++F N+  Q      +  R I    V R          +  +V G  F+ H +R 
Sbjct  4    LYVGTHDFGNFCKQDQ-PKKNTVRTILEAAVSRVGGEDGD--LIVFEVRGSGFLDHMVRA  60

Query  467  MVAMATMLVRAGC------DPQRIVDSYGPTKIAIPKAPGLGLLLERPIFD  511
            MV +   L   G           ++++  P KIA P AP +GL L    + 
Sbjct  61   MVGV---LFLVGQGKEPPEWIAELLNAKDPRKIAGPTAPPVGLYLFHVRYP  108



Lambda      K        H        a         alpha
   0.314    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00011579

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460204 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthas...  64.9    2e-13


>CDD:460204 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthase.  Involved 
in the formation of pseudouridine at the anticodon stem 
and loop of transfer-RNAs Pseudouridine is an isomer of uridine 
(5-(beta-D-ribofuranosyl) uracil, and id the most abundant 
modified nucleoside found in all cellular RNAs. The TruA-like 
proteins also exhibit a conserved sequence with a strictly 
conserved aspartic acid, likely involved in catalysis.
Length=108

 Score = 64.9 bits (159),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 45/111 (41%), Gaps = 12/111 (11%)

Query  323  KYVGTNNFYNYTIQKTYTDPSAKRFIKSFKVDRNPIIINGTEWLSLKVHGQSFMMHQIRK  382
             YVGT++F N+  Q      +  R I    V R          +  +V G  F+ H +R 
Sbjct  4    LYVGTHDFGNFCKQDQ-PKKNTVRTILEAAVSRVGGEDGD--LIVFEVRGSGFLDHMVRA  60

Query  383  MVAMATMLVRAGC------DPQRIVDSYGPTKIAIPKAPGLGLLLERPIFD  427
            MV +   L   G           ++++  P KIA P AP +GL L    + 
Sbjct  61   MVGV---LFLVGQGKEPPEWIAELLNAKDPRKIAGPTAPPVGLYLFHVRYP  108



Lambda      K        H        a         alpha
   0.314    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688900030


Query= TCONS_00011580

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460204 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthas...  64.9    1e-13


>CDD:460204 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthase.  Involved 
in the formation of pseudouridine at the anticodon stem 
and loop of transfer-RNAs Pseudouridine is an isomer of uridine 
(5-(beta-D-ribofuranosyl) uracil, and id the most abundant 
modified nucleoside found in all cellular RNAs. The TruA-like 
proteins also exhibit a conserved sequence with a strictly 
conserved aspartic acid, likely involved in catalysis.
Length=108

 Score = 64.9 bits (159),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 45/111 (41%), Gaps = 12/111 (11%)

Query  354  KYVGTNNFYNYTIQKTYTDPSAKRFIKSFKVDRNPIIINGTEWLSLKVHGQSFMMHQIRK  413
             YVGT++F N+  Q      +  R I    V R          +  +V G  F+ H +R 
Sbjct  4    LYVGTHDFGNFCKQDQ-PKKNTVRTILEAAVSRVGGEDGD--LIVFEVRGSGFLDHMVRA  60

Query  414  MVAMATMLVRAGC------DPQRIVDSYGPTKIAIPKAPGLGLLLERPIFD  458
            MV +   L   G           ++++  P KIA P AP +GL L    + 
Sbjct  61   MVGV---LFLVGQGKEPPEWIAELLNAKDPRKIAGPTAPPVGLYLFHVRYP  108



Lambda      K        H        a         alpha
   0.315    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0756    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00011581

Length=577
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460204 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthas...  64.9    2e-13


>CDD:460204 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthase.  Involved 
in the formation of pseudouridine at the anticodon stem 
and loop of transfer-RNAs Pseudouridine is an isomer of uridine 
(5-(beta-D-ribofuranosyl) uracil, and id the most abundant 
modified nucleoside found in all cellular RNAs. The TruA-like 
proteins also exhibit a conserved sequence with a strictly 
conserved aspartic acid, likely involved in catalysis.
Length=108

 Score = 64.9 bits (159),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 45/111 (41%), Gaps = 12/111 (11%)

Query  354  KYVGTNNFYNYTIQKTYTDPSAKRFIKSFKVDRNPIIINGTEWLSLKVHGQSFMMHQIRK  413
             YVGT++F N+  Q      +  R I    V R          +  +V G  F+ H +R 
Sbjct  4    LYVGTHDFGNFCKQDQ-PKKNTVRTILEAAVSRVGGEDGD--LIVFEVRGSGFLDHMVRA  60

Query  414  MVAMATMLVRAGC------DPQRIVDSYGPTKIAIPKAPGLGLLLERPIFD  458
            MV +   L   G           ++++  P KIA P AP +GL L    + 
Sbjct  61   MVGV---LFLVGQGKEPPEWIAELLNAKDPRKIAGPTAPPVGLYLFHVRYP  108



Lambda      K        H        a         alpha
   0.314    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 724797580


Query= TCONS_00011582

Length=631
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  112     2e-29
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  67.2    3e-14


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 112 bits (282),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 67/226 (30%), Positives = 97/226 (43%), Gaps = 61/226 (27%)

Query  170  TPIQRLAIPRLLEEPKTEKKPTKADDDEPRYDQYLLAAETGSGKTLAYLLPVVDAVKREE  229
            TPIQ  AIP +LE             D       L+ A TGSGKTLA+LLP ++A+ + +
Sbjct  1    TPIQAEAIPAILE-----------GRD------VLVQAPTGSGKTLAFLLPALEALDKLD  43

Query  230  ARDKELEKKEQEEKAREREERLKNRAFDIEPEIPPLSNAGRPRAIILVPTSELVAQVGVK  289
                                                     P+A++L PT EL  Q+  +
Sbjct  44   ---------------------------------------NGPQALVLAPTRELAEQIYEE  64

Query  290  VKALSHTVKYRSGMISSNFTPRRIKNTLFHPDGIDILVATPHLLASIAKTEPYVLSRVSH  349
            +K L   +  +   +    + +     L    G DILV TP  L  + +     L  +  
Sbjct  65   LKKLGKGLGLKVASLLGGDSRKEQLEKL---KGPDILVGTPGRLLDLLQERKL-LKNLKL  120

Query  350  LVLDEADSLLDRSFAPTTTEIISKAAPSLRKLILCSATIPRSLDNL  395
            LVLDEA  LLD  F P   EI+    P  R+++L SAT+PR+L++L
Sbjct  121  LVLDEAHRLLDMGFGPDLEEILR-RLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 67.2 bits (165),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 35/136 (26%), Positives = 51/136 (38%), Gaps = 40/136 (29%)

Query  464  KTKKILVFVNEREEADEVAQFLRSKGIDAQSLSRDSDARKQEEILAEFTEAPPPPSPDEI  523
            +  K+L+F   ++  +     L  +GI    L  D    ++EEIL +F            
Sbjct  14   RGGKVLIFSQTKKTLEA-ELLLEKEGIKVARLHGDLSQEEREEILEDF------------  60

Query  524  LLAQKKRRYEDAIPFEMPEKANQGSSRRLANTKVLVTTDLASRGIDTLAVKTVILYHVPH  583
                                  +G         VLV TD+A RG+D   V  VI Y +P 
Sbjct  61   ---------------------RKG------KIDVLVATDVAERGLDLPDVDLVINYDLPW  93

Query  584  TTIDFIHRLGRLGRMG  599
                +I R+GR GR G
Sbjct  94   NPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.133    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 793437020


Query= TCONS_00011583

Length=569
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  62.9    1e-12


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 62.9 bits (153),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 16/112 (14%)

Query  86   VCARKFIKQGQEIKYLSGTLVPMTREEERDLDLKRKDFSIVMSSR-------------KK  132
            + A + I +G+ I      L+    E ++   L      + +                  
Sbjct  4    LFATEDIPKGEFIGEYVEVLLITKEEADKRELLYYDKLELRLWGPYLFTLDEDSEYCIDA  63

Query  133  TPSFFLGPARFANHDCNANGKLVTR---GSEGMQVVATRDIYIGEEITVSYG  181
               ++   ARF NH C+ N ++      G   + + A RDI  GEE+T+ YG
Sbjct  64   RALYYGNWARFINHSCDPNCEVRVVYVNGGPRIVIFALRDIKPGEELTIDYG  115



Lambda      K        H        a         alpha
   0.313    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 712842156


Query= TCONS_00011584

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425547 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e      97.1    4e-27


>CDD:425547 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e.  
Length=119

 Score = 97.1 bits (243),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 36/79 (46%), Positives = 47/79 (59%), Gaps = 13/79 (16%)

Query  99   QLKTLLNCIDNSGAAVVECVNVL--KKKRPATVGDRIVVVVQKQRNFGPESTNNSGIANK  156
            Q+ T LN  DNSGA  V C+ VL    +R A+VGD IVV V+K +  G           K
Sbjct  1    QVGTRLNVADNSGAKEVMCIKVLGGSGRRYASVGDIIVVSVKKAKPNG-----------K  49

Query  157  VRRGDIRHAVVVRAKKEMQ  175
            V++GD+  AVVVR KKE++
Sbjct  50   VKKGDVVKAVVVRTKKEIR  68



Lambda      K        H        a         alpha
   0.318    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00017787

Length=109
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425547 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e      141     9e-46


>CDD:425547 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e.  
Length=119

 Score = 141 bits (359),  Expect = 9e-46, Method: Composition-based stats.
 Identities = 54/109 (50%), Positives = 71/109 (65%), Gaps = 13/109 (12%)

Query  3    QLKTLLNCIDNSGAAVVECVNVL--KKKRPATVGDRIVVVVQKQRNFGPESTNNSGIANK  60
            Q+ T LN  DNSGA  V C+ VL    +R A+VGD IVV V+K +  G           K
Sbjct  1    QVGTRLNVADNSGAKEVMCIKVLGGSGRRYASVGDIIVVSVKKAKPNG-----------K  49

Query  61   VRRGDIRHAVVVRAKKEMQRPDGTIVKFDDNACVLVNKSGDPIGTRMNG  109
            V++GD+  AVVVR KKE++RPDG+ ++FDDNA VL+N  G+P GTR+ G
Sbjct  50   VKKGDVVKAVVVRTKKEIRRPDGSYIRFDDNAAVLINDKGEPKGTRIFG  98



Lambda      K        H        a         alpha
   0.318    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00011585

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425547 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e      176     3e-59


>CDD:425547 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e.  
Length=119

 Score = 176 bits (450),  Expect = 3e-59, Method: Composition-based stats.
 Identities = 66/129 (51%), Positives = 86/129 (67%), Gaps = 13/129 (10%)

Query  3    QLKTLLNCIDNSGAAVVECVNVL--KKKRPATVGDRIVVVVQKQRNFGPESTNNSGIANK  60
            Q+ T LN  DNSGA  V C+ VL    +R A+VGD IVV V+K +  G           K
Sbjct  1    QVGTRLNVADNSGAKEVMCIKVLGGSGRRYASVGDIIVVSVKKAKPNG-----------K  49

Query  61   VRRGDIRHAVVVRAKKEMQRPDGTIVKFDDNACVLVNKSGDPIGTRMNGVVATELRGKQW  120
            V++GD+  AVVVR KKE++RPDG+ ++FDDNA VL+N  G+P GTR+ G VA ELR K++
Sbjct  50   VKKGDVVKAVVVRTKKEIRRPDGSYIRFDDNAAVLINDKGEPKGTRIFGPVARELREKKF  109

Query  121  SKILSLAPM  129
             KI+SLAP 
Sbjct  110  PKIVSLAPE  118



Lambda      K        H        a         alpha
   0.319    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00017788

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425547 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e      176     5e-59


>CDD:425547 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e.  
Length=119

 Score = 176 bits (449),  Expect = 5e-59, Method: Composition-based stats.
 Identities = 66/129 (51%), Positives = 86/129 (67%), Gaps = 13/129 (10%)

Query  3    QLKTLLNCIDNSGAAVVECVNVL--KKKRPATVGDRIVVVVQKQRNFGPESTNNSGIANK  60
            Q+ T LN  DNSGA  V C+ VL    +R A+VGD IVV V+K +  G           K
Sbjct  1    QVGTRLNVADNSGAKEVMCIKVLGGSGRRYASVGDIIVVSVKKAKPNG-----------K  49

Query  61   VRRGDIRHAVVVRAKKEMQRPDGTIVKFDDNACVLVNKSGDPIGTRMNGLVATELRGKQW  120
            V++GD+  AVVVR KKE++RPDG+ ++FDDNA VL+N  G+P GTR+ G VA ELR K++
Sbjct  50   VKKGDVVKAVVVRTKKEIRRPDGSYIRFDDNAAVLINDKGEPKGTRIFGPVARELREKKF  109

Query  121  SKILSLAPM  129
             KI+SLAP 
Sbjct  110  PKIVSLAPE  118



Lambda      K        H        a         alpha
   0.318    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00017789

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425547 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e      176     3e-59


>CDD:425547 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e.  
Length=119

 Score = 176 bits (450),  Expect = 3e-59, Method: Composition-based stats.
 Identities = 66/129 (51%), Positives = 86/129 (67%), Gaps = 13/129 (10%)

Query  3    QLKTLLNCIDNSGAAVVECVNVL--KKKRPATVGDRIVVVVQKQRNFGPESTNNSGIANK  60
            Q+ T LN  DNSGA  V C+ VL    +R A+VGD IVV V+K +  G           K
Sbjct  1    QVGTRLNVADNSGAKEVMCIKVLGGSGRRYASVGDIIVVSVKKAKPNG-----------K  49

Query  61   VRRGDIRHAVVVRAKKEMQRPDGTIVKFDDNACVLVNKSGDPIGTRMNGVVATELRGKQW  120
            V++GD+  AVVVR KKE++RPDG+ ++FDDNA VL+N  G+P GTR+ G VA ELR K++
Sbjct  50   VKKGDVVKAVVVRTKKEIRRPDGSYIRFDDNAAVLINDKGEPKGTRIFGPVARELREKKF  109

Query  121  SKILSLAPM  129
             KI+SLAP 
Sbjct  110  PKIVSLAPE  118



Lambda      K        H        a         alpha
   0.319    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00011587

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425792 pfam00639, Rotamase, PPIC-type PPIASE domain. Rotamase...  93.9    4e-26
CDD:404499 pfam13616, Rotamase_3, PPIC-type PPIASE domain. Rotama...  76.6    4e-19


>CDD:425792 pfam00639, Rotamase, PPIC-type PPIASE domain.  Rotamases increase 
the rate of protein folding by catalyzing the interconversion 
of cis-proline and trans-proline.
Length=96

 Score = 93.9 bits (234),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 45/105 (43%), Positives = 65/105 (62%), Gaps = 11/105 (10%)

Query  73   HLLIKHRDSRRPSSWREAEITRSKEEAIEILRGHEQRIRSGEVSLGDIAVSES-DCSSAR  131
            H+LIK  ++       E +   +K +A EIL    ++++SGE S  ++A   S DC SA 
Sbjct  1    HILIKTPEAS------ERDRAEAKAKAEEIL----EQLKSGEDSFAELARKYSDDCPSAA  50

Query  132  KKGDLGFFGRGEMQKEFEDAAFALQPGQVSGIVETASGVHLIERV  176
              GDLG+F RG++  EFE AAFAL+PG++SG VET  G H+I+  
Sbjct  51   NGGDLGWFTRGQLPPEFEKAAFALKPGEISGPVETRFGFHIIKLT  95


>CDD:404499 pfam13616, Rotamase_3, PPIC-type PPIASE domain.  Rotamases increase 
the rate of protein folding by catalyzing the interconversion 
of cis-proline and trans-proline.
Length=116

 Score = 76.6 bits (189),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 12/115 (10%)

Query  61   GTAQGEGKIRCSHLLIKHRDSRRPSSWREAEITRSKEEAIEILRGHEQRIRSGEVSLGDI  120
                    ++ SH+LI +             ++R++EEA          +++G      +
Sbjct  8    DKKSAPDSVKASHILISY----------SQAVSRTEEEAKAKADSLLAALKNGA-DFAAL  56

Query  121  AVSES-DCSSARKKGDLGFFGRGEMQKEFEDAAFALQPGQVSGIVETASGVHLIE  174
            A + S D +S    GDLG+F +G+M KEFEDA F+L+ G++SG+V+T  G H+I+
Sbjct  57   AKTYSDDPASKNNGGDLGWFTKGQMVKEFEDAVFSLKVGEISGVVKTQFGFHIIK  111



Lambda      K        H        a         alpha
   0.313    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00011588

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00011589

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425792 pfam00639, Rotamase, PPIC-type PPIASE domain. Rotamase...  90.1    3e-25
CDD:404499 pfam13616, Rotamase_3, PPIC-type PPIASE domain. Rotama...  76.3    1e-19


>CDD:425792 pfam00639, Rotamase, PPIC-type PPIASE domain.  Rotamases increase 
the rate of protein folding by catalyzing the interconversion 
of cis-proline and trans-proline.
Length=96

 Score = 90.1 bits (224),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 45/105 (43%), Positives = 65/105 (62%), Gaps = 11/105 (10%)

Query  26   HLLIKHRDSRRPSSWREAEITRSKEEAIEILRGHEQRIRSGEVSLGDIAVSES-DCSSAR  84
            H+LIK  ++       E +   +K +A EIL    ++++SGE S  ++A   S DC SA 
Sbjct  1    HILIKTPEAS------ERDRAEAKAKAEEIL----EQLKSGEDSFAELARKYSDDCPSAA  50

Query  85   KKGDLGFFGRGEMQKEFEDAAFALQPGQVSGIVETASGVHLIERV  129
              GDLG+F RG++  EFE AAFAL+PG++SG VET  G H+I+  
Sbjct  51   NGGDLGWFTRGQLPPEFEKAAFALKPGEISGPVETRFGFHIIKLT  95


>CDD:404499 pfam13616, Rotamase_3, PPIC-type PPIASE domain.  Rotamases increase 
the rate of protein folding by catalyzing the interconversion 
of cis-proline and trans-proline.
Length=116

 Score = 76.3 bits (188),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 12/115 (10%)

Query  14   GTAQGEGKIRCSHLLIKHRDSRRPSSWREAEITRSKEEAIEILRGHEQRIRSGEVSLGDI  73
                    ++ SH+LI +             ++R++EEA          +++G      +
Sbjct  8    DKKSAPDSVKASHILISY----------SQAVSRTEEEAKAKADSLLAALKNGA-DFAAL  56

Query  74   AVSES-DCSSARKKGDLGFFGRGEMQKEFEDAAFALQPGQVSGIVETASGVHLIE  127
            A + S D +S    GDLG+F +G+M KEFEDA F+L+ G++SG+V+T  G H+I+
Sbjct  57   AKTYSDDPASKNNGGDLGWFTKGQMVKEFEDAVFSLKVGEISGVVKTQFGFHIIK  111



Lambda      K        H        a         alpha
   0.315    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00011590

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425792 pfam00639, Rotamase, PPIC-type PPIASE domain. Rotamase...  93.5    5e-26
CDD:404499 pfam13616, Rotamase_3, PPIC-type PPIASE domain. Rotama...  76.6    4e-19


>CDD:425792 pfam00639, Rotamase, PPIC-type PPIASE domain.  Rotamases increase 
the rate of protein folding by catalyzing the interconversion 
of cis-proline and trans-proline.
Length=96

 Score = 93.5 bits (233),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 45/104 (43%), Positives = 65/104 (63%), Gaps = 11/104 (11%)

Query  73   HLLIKHRDSRRPSSWREAEITRSKEEAIEILRGHEQRIRSGEVSLGDIAVSES-DCSSAR  131
            H+LIK  ++       E +   +K +A EIL    ++++SGE S  ++A   S DC SA 
Sbjct  1    HILIKTPEAS------ERDRAEAKAKAEEIL----EQLKSGEDSFAELARKYSDDCPSAA  50

Query  132  KKGDLGFFGRGEMQKEFEDAAFALQPGQVSGIVETASGVHLIER  175
              GDLG+F RG++  EFE AAFAL+PG++SG VET  G H+I+ 
Sbjct  51   NGGDLGWFTRGQLPPEFEKAAFALKPGEISGPVETRFGFHIIKL  94


>CDD:404499 pfam13616, Rotamase_3, PPIC-type PPIASE domain.  Rotamases increase 
the rate of protein folding by catalyzing the interconversion 
of cis-proline and trans-proline.
Length=116

 Score = 76.6 bits (189),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 12/115 (10%)

Query  61   GTAQGEGKIRCSHLLIKHRDSRRPSSWREAEITRSKEEAIEILRGHEQRIRSGEVSLGDI  120
                    ++ SH+LI +             ++R++EEA          +++G      +
Sbjct  8    DKKSAPDSVKASHILISY----------SQAVSRTEEEAKAKADSLLAALKNGA-DFAAL  56

Query  121  AVSES-DCSSARKKGDLGFFGRGEMQKEFEDAAFALQPGQVSGIVETASGVHLIE  174
            A + S D +S    GDLG+F +G+M KEFEDA F+L+ G++SG+V+T  G H+I+
Sbjct  57   AKTYSDDPASKNNGGDLGWFTKGQMVKEFEDAVFSLKVGEISGVVKTQFGFHIIK  111



Lambda      K        H        a         alpha
   0.313    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00017790

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00011591

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00011592

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00011593

Length=184
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  65.7    2e-15


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 65.7 bits (161),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 26/71 (37%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query  57   LYVGNLSFYTTEEQIHELFSKCGEIKRLVMGLDRYNKTPCGFCFVEYYTHQDALDCLKYI  116
            L+VGNL   TTEE + +LFSK G IK + + +        GF FVE+   +DA   ++ +
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRL-VRDETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  117  GGTKLDERIIR  127
             G +L  R ++
Sbjct  60   NGKELGGRELK  70



Lambda      K        H        a         alpha
   0.318    0.140    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00011594

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00011596

Length=514


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00011595

Length=521


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 651048380


Query= TCONS_00011597

Length=169
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428546 pfam05620, DUF788, Protein of unknown function (DUF788...  212     6e-72


>CDD:428546 pfam05620, DUF788, Protein of unknown function (DUF788).  This 
family consists of several eukaryotic proteins of unknown 
function.
Length=167

 Score = 212 bits (542),  Expect = 6e-72, Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 102/169 (60%), Gaps = 8/169 (5%)

Query  1    MAQKAAKTLAARNASLLLRTHIIALCLHSIFLLLHWTF---NRPRSLKPYFFLACPTLAI  57
            MA K AK +A  NA+ L   H+I+L +++++LLL + F     PRSL  Y  L+ P LA 
Sbjct  1    MANKGAKKIAEENAATLNFLHLISLAVNALYLLLRFLFRSSFTPRSLFLYLLLSLPALAC  60

Query  58   EFYLERLGRPSYNPADGSLRSPGEDLGASGLTEYMWDVLYWTWGCMGAACLFGDRAWWLW  117
             +YLE++GRP Y+  DG L   GEDL A GLTEYM+DV+Y TW     + LFG++ WWL+
Sbjct  61   YYYLEKMGRPKYD-EDGELLDSGEDLSAGGLTEYMFDVIYLTWIVQVLSILFGNKFWWLY  119

Query  118  IVIPIYSVWLAYTTFTGMKSGLAGMGGADTPVAE---SKRQKKMEKRGG  163
            +VIP Y+ +  +    G      G G ++    E   SKRQ+K+EKR  
Sbjct  120  LVIPAYAAYKLWGLILGPW-FFRGQGSSEAAPEEEVKSKRQEKLEKRAA  167



Lambda      K        H        a         alpha
   0.325    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00011599

Length=438


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.144    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 533728992


Query= TCONS_00011598

Length=1617
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403957 pfam12906, RINGv, RING-variant domain                      84.4    2e-20


>CDD:403957 pfam12906, RINGv, RING-variant domain.  
Length=47

 Score = 84.4 bits (209),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 30/47 (64%), Gaps = 0/47 (0%)

Query  43  CRICRGEGTLEEPLFYPCKCSGSIKFVHQPCLVEWLSHSQKKHCELC  89
           CRIC  E   + PL +PC+C GS+K+VHQ CL  WL  S    CE+C
Sbjct  1   CRICLEEEAEDSPLIHPCRCRGSLKYVHQSCLERWLDTSANTQCEIC  47



Lambda      K        H        a         alpha
   0.323    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2059868316


Query= TCONS_00011600

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426008 pfam01039, Carboxyl_trans, Carboxyl transferase domain...  116     2e-30


>CDD:426008 pfam01039, Carboxyl_trans, Carboxyl transferase domain.  All 
of the members in this family are biotin dependent carboxylases. 
The carboxyl transferase domain carries out the following 
reaction; transcarboxylation from biotin to an acceptor molecule. 
There are two recognized types of carboxyl transferase. 
One of them uses acyl-CoA and the other uses 2-oxoacid 
as the acceptor molecule of carbon dioxide. All of the members 
in this family utilize acyl-CoA as the acceptor molecule.
Length=491

 Score = 116 bits (292),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 49/117 (42%), Gaps = 19/117 (16%)

Query  3    MYADEEARGGVLEPEGIVNIKYRREKQLDTMARLDATYGELRRALEDPSLSKEQLSEIKA  62
             +A   AR  V+ PEG V IK+R+EK    M                    K+  +  K 
Sbjct  394  NFAWPTARIAVMGPEGAVEIKFRKEKAAAEMRG------------------KDLAATRKQ  435

Query  63   KMAAREEQLLPVYLQIALQFADLHDRAGRMVAKNTIRKALTWKNARRFFYWRVRRRL  119
            K+A  EE+L P Y+  A  FAD     GR  AK  I  A  W    RFF WR    +
Sbjct  436  KIAEYEEELSPPYVAAARGFADAVIDPGRTRAKLVIALAALWTK-PRFFPWRKHGNI  491



Lambda      K        H        a         alpha
   0.315    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00011601

Length=1272


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1616128400


Query= TCONS_00011602

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0735    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00011603

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00011604

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461464 pfam04880, NUDE_C, NUDE protein, C-terminal conserved ...  170     1e-50


>CDD:461464 pfam04880, NUDE_C, NUDE protein, C-terminal conserved region. 
 This family represents the C-terminal conserved region of 
the NUDE proteins. NUDE proteins are involved in nuclear migration.
Length=169

 Score = 170 bits (433),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 101/178 (57%), Positives = 113/178 (63%), Gaps = 17/178 (10%)

Query  157  SLEDLESKYNVAIERAVLLEEEMRAGEQEREKLRIENQRLRDELSDLKIETEIIHEKLRN  216
            SLEDLESKYN AIER VLLEEE++ GEQERE LRIENQRLRDELSDLK E  I  EKLR 
Sbjct  1    SLEDLESKYNQAIERGVLLEEEIKIGEQERESLRIENQRLRDELSDLKQELAIRQEKLR-  59

Query  217  AELQNSRRRKPISLRSPSTPQTPDLFNRSPASSIVSSPLFSTPTLKT----SLMSATATP  272
                N   R P    S  + QT ++F+RSPA   VSSP+ +TP  K+       S TATP
Sbjct  60   ----NLLMRSP----STPSLQTLEIFDRSPAVQAVSSPVIATPPEKSFNSLRTGSETATP  111

Query  273  PSPPISESSSSLRKSMNAMPGFPLQKASASDSS----FGSRSLHGSRTQKHNNHSRAT  326
            PSPP SESS  LRK     P  P  +ASASDS+      SRSL+GSR      HSR T
Sbjct  112  PSPPASESSDLLRKVGALTPKLPRCRASASDSNASRRGNSRSLYGSRPPTKFAHSRHT  169



Lambda      K        H        a         alpha
   0.306    0.122    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790552412


Query= TCONS_00017792

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461464 pfam04880, NUDE_C, NUDE protein, C-terminal conserved ...  170     1e-50


>CDD:461464 pfam04880, NUDE_C, NUDE protein, C-terminal conserved region. 
 This family represents the C-terminal conserved region of 
the NUDE proteins. NUDE proteins are involved in nuclear migration.
Length=169

 Score = 170 bits (433),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 101/178 (57%), Positives = 113/178 (63%), Gaps = 17/178 (10%)

Query  157  SLEDLESKYNVAIERAVLLEEEMRAGEQEREKLRIENQRLRDELSDLKIETEIIHEKLRN  216
            SLEDLESKYN AIER VLLEEE++ GEQERE LRIENQRLRDELSDLK E  I  EKLR 
Sbjct  1    SLEDLESKYNQAIERGVLLEEEIKIGEQERESLRIENQRLRDELSDLKQELAIRQEKLR-  59

Query  217  AELQNSRRRKPISLRSPSTPQTPDLFNRSPASSIVSSPLFSTPTLKT----SLMSATATP  272
                N   R P    S  + QT ++F+RSPA   VSSP+ +TP  K+       S TATP
Sbjct  60   ----NLLMRSP----STPSLQTLEIFDRSPAVQAVSSPVIATPPEKSFNSLRTGSETATP  111

Query  273  PSPPISESSSSLRKSMNAMPGFPLQKASASDSS----FGSRSLHGSRTQKHNNHSRAT  326
            PSPP SESS  LRK     P  P  +ASASDS+      SRSL+GSR      HSR T
Sbjct  112  PSPPASESSDLLRKVGALTPKLPRCRASASDSNASRRGNSRSLYGSRPPTKFAHSRHT  169



Lambda      K        H        a         alpha
   0.306    0.122    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790552412


Query= TCONS_00011605

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00011606

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376404 pfam00857, Isochorismatase, Isochorismatase family. Th...  153     4e-47


>CDD:376404 pfam00857, Isochorismatase, Isochorismatase family.  This family 
are hydrolase enzymes.
Length=173

 Score = 153 bits (389),  Expect = 4e-47, Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 94/192 (49%), Gaps = 23/192 (12%)

Query  65   TALVIIDMQKDFCSPGGYMEYQGYDISAAQSLIPKLQQVLNTFRTAGFPVYHTREGHRPD  124
            TAL++IDMQ DF   GG        +    +++  + ++L   R AG PV  TR+   PD
Sbjct  1    TALLVIDMQNDFVDSGGP------KVEGIAAILENINRLLKAARKAGIPVIFTRQVPEPD  54

Query  125  LSTLSNREAFRSRNNASGMGIGSQGPLGRLLVRGEVGHDIVDELYPLPEEPVIDKPGKSA  184
             +                     +         G  G ++V EL PLP + V+DK   SA
Sbjct  55   DA-----------------DFALKDRPSPAFPPGTTGAELVPELAPLPGDLVVDKTRFSA  97

Query  185  FSYTDFELLLRNKGIKNLVIAGVTTDVCVSTTMREANDKGFDCVILEDCTAAGEPSLHVS  244
            F+ TD + +LR  GI  LV+AGV TDVCV +T R+A D+G++ V++ D  A+  P  H +
Sbjct  98   FAGTDLDEILRELGIDTLVLAGVATDVCVLSTARDALDRGYEVVVVSDACASLSPEAHDA  157

Query  245  TLESVKMEGGIF  256
             LE +   G   
Sbjct  158  ALERLAQRGAEV  169



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00011607

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376404 pfam00857, Isochorismatase, Isochorismatase family. Th...  155     1e-46


>CDD:376404 pfam00857, Isochorismatase, Isochorismatase family.  This family 
are hydrolase enzymes.
Length=173

 Score = 155 bits (394),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 94/192 (49%), Gaps = 23/192 (12%)

Query  167  TALVIIDMQKDFCSPGGYMEYQGYDISAAQSLIPKLQQVLNTFRTAGFPVYHTREGHRPD  226
            TAL++IDMQ DF   GG        +    +++  + ++L   R AG PV  TR+   PD
Sbjct  1    TALLVIDMQNDFVDSGGP------KVEGIAAILENINRLLKAARKAGIPVIFTRQVPEPD  54

Query  227  LSTLSNREAFRSRNNASGMGIGSQGPLGRLLVRGEVGHDIVDELYPLPEEPVIDKPGKSA  286
             +                     +         G  G ++V EL PLP + V+DK   SA
Sbjct  55   DA-----------------DFALKDRPSPAFPPGTTGAELVPELAPLPGDLVVDKTRFSA  97

Query  287  FSYTDFELLLRNKGIKNLVIAGVTTDVCVSTTMREANDKGFDCVILEDCTAAGEPSLHVS  346
            F+ TD + +LR  GI  LV+AGV TDVCV +T R+A D+G++ V++ D  A+  P  H +
Sbjct  98   FAGTDLDEILRELGIDTLVLAGVATDVCVLSTARDALDRGYEVVVVSDACASLSPEAHDA  157

Query  347  TLESVKMEGGIF  358
             LE +   G   
Sbjct  158  ALERLAQRGAEV  169



Lambda      K        H        a         alpha
   0.317    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00017793

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00011608

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460120 pfam01223, Endonuclease_NS, DNA/RNA non-specific endon...  224     3e-73


>CDD:460120 pfam01223, Endonuclease_NS, DNA/RNA non-specific endonuclease. 
 
Length=220

 Score = 224 bits (572),  Expect = 3e-73, Method: Composition-based stats.
 Identities = 95/237 (40%), Positives = 130/237 (55%), Gaps = 20/237 (8%)

Query  81   DPAGIYQYGFPGPIADTITSLPL-TGAYDRRTRNPAWVAEHITPYSLSLKNADRKHSAFV  139
            +   +++ GFPG  +D +      +  YDRRTR   WVA H+T  SL+  +  R+   F 
Sbjct  1    NSGTLFKVGFPGSGSDVVLFYKYYSLCYDRRTRRALWVAHHLTGASLA-GSKGRRRPGFK  59

Query  140  EDASIP-AIFRAKLADYFRSGYDRGHQVPAADAKWSQDAMDGTFALTNMCPQVGEGFNRD  198
            +D  IP A FR    DY  SG+DRGH  PAAD K+S  A   TF  TN+ PQ   GFN+ 
Sbjct  60   QDPRIPGAYFRTLYTDYTGSGFDRGHLAPAADFKFSAGANAATFNFTNIAPQWA-GFNQG  118

Query  199  YWAHFEEFCRDLTKKYP-SVRIVTGPLYLPHRDPDGKWRVSYEVIGNPPNVAVPTHFYKV  257
             WA+ E + RDL  ++  SV + TGPLY+P+                   VAVPTHF+KV
Sbjct  119  NWAYLENYVRDLAARHNNSVYVYTGPLYVPNLLDKN-------------KVAVPTHFWKV  165

Query  258  IYAEDGTASPTSKVSLGAFVLPNARIPNDKRLAEFEVPLEVLERASGLEFASKLDVS  314
            I +EDG       ++  AFVLPN  I +D  L  F+VP++ LER +GL+F   +  +
Sbjct  166  ILSEDGDG--GGGLNAPAFVLPNKYILDDGPLRTFQVPVDELERLTGLDFCCGVPDA  220



Lambda      K        H        a         alpha
   0.316    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00017794

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460120 pfam01223, Endonuclease_NS, DNA/RNA non-specific endon...  224     3e-73


>CDD:460120 pfam01223, Endonuclease_NS, DNA/RNA non-specific endonuclease. 
 
Length=220

 Score = 224 bits (572),  Expect = 3e-73, Method: Composition-based stats.
 Identities = 95/237 (40%), Positives = 130/237 (55%), Gaps = 20/237 (8%)

Query  81   DPAGIYQYGFPGPIADTITSLPL-TGAYDRRTRNPAWVAEHITPYSLSLKNADRKHSAFV  139
            +   +++ GFPG  +D +      +  YDRRTR   WVA H+T  SL+  +  R+   F 
Sbjct  1    NSGTLFKVGFPGSGSDVVLFYKYYSLCYDRRTRRALWVAHHLTGASLA-GSKGRRRPGFK  59

Query  140  EDASIP-AIFRAKLADYFRSGYDRGHQVPAADAKWSQDAMDGTFALTNMCPQVGEGFNRD  198
            +D  IP A FR    DY  SG+DRGH  PAAD K+S  A   TF  TN+ PQ   GFN+ 
Sbjct  60   QDPRIPGAYFRTLYTDYTGSGFDRGHLAPAADFKFSAGANAATFNFTNIAPQWA-GFNQG  118

Query  199  YWAHFEEFCRDLTKKYP-SVRIVTGPLYLPHRDPDGKWRVSYEVIGNPPNVAVPTHFYKV  257
             WA+ E + RDL  ++  SV + TGPLY+P+                   VAVPTHF+KV
Sbjct  119  NWAYLENYVRDLAARHNNSVYVYTGPLYVPNLLDKN-------------KVAVPTHFWKV  165

Query  258  IYAEDGTASPTSKVSLGAFVLPNARIPNDKRLAEFEVPLEVLERASGLEFASKLDVS  314
            I +EDG       ++  AFVLPN  I +D  L  F+VP++ LER +GL+F   +  +
Sbjct  166  ILSEDGDG--GGGLNAPAFVLPNKYILDDGPLRTFQVPVDELERLTGLDFCCGVPDA  220



Lambda      K        H        a         alpha
   0.316    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00017795

Length=873
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460178 pfam01369, Sec7, Sec7 domain. The Sec7 domain is a gua...  71.3    1e-14


>CDD:460178 pfam01369, Sec7, Sec7 domain.  The Sec7 domain is a guanine-nucleotide-exchange-factor 
(GEF) for the pfam00025 family.
Length=183

 Score = 71.3 bits (176),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query  12   FLCTDQAYFIAFSILILHTDVFNKNNKRKMQKSDYVRNTRG----EGVSDDVLECIYENI  67
            F   D AY +A+SI++L+TD+ N N K+KM   D++RN RG    +   D+ LE IY++I
Sbjct  119  FANADAAYVLAYSIIMLNTDLHNPNVKKKMTLEDFIRNLRGINDGKDFPDEYLEEIYDSI  178

Query  68   AYTPF  72
                 
Sbjct  179  KKNEI  183



Lambda      K        H        a         alpha
   0.313    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1116829892


Query= TCONS_00011609

Length=873
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460178 pfam01369, Sec7, Sec7 domain. The Sec7 domain is a gua...  71.3    1e-14


>CDD:460178 pfam01369, Sec7, Sec7 domain.  The Sec7 domain is a guanine-nucleotide-exchange-factor 
(GEF) for the pfam00025 family.
Length=183

 Score = 71.3 bits (176),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query  12   FLCTDQAYFIAFSILILHTDVFNKNNKRKMQKSDYVRNTRG----EGVSDDVLECIYENI  67
            F   D AY +A+SI++L+TD+ N N K+KM   D++RN RG    +   D+ LE IY++I
Sbjct  119  FANADAAYVLAYSIIMLNTDLHNPNVKKKMTLEDFIRNLRGINDGKDFPDEYLEEIYDSI  178

Query  68   AYTPF  72
                 
Sbjct  179  KKNEI  183



Lambda      K        H        a         alpha
   0.313    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1116829892


Query= TCONS_00011612

Length=833


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1059409332


Query= TCONS_00011611

Length=833


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1059409332


Query= TCONS_00011610

Length=833


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1059409332


Query= TCONS_00011613

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00011614

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00011615

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459730 pfam00246, Peptidase_M14, Zinc carboxypeptidase            286     3e-93


>CDD:459730 pfam00246, Peptidase_M14, Zinc carboxypeptidase.  
Length=287

 Score = 286 bits (733),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 108/311 (35%), Positives = 161/311 (52%), Gaps = 25/311 (8%)

Query  205  IVPWMRLMASMFSSHVQMINVGVSHEGREIPALRLGRTRGQTADPYPRKTIVVVGGSHAR  264
            I  W+  +A+ +   V+++++G S EGR +  L++  + G       +  + + GG HAR
Sbjct  1    IEAWLDALAARYPDLVRLVSIGKSVEGRPLKVLKI--SSGPGEHNPGKPAVFIDGGIHAR  58

Query  265  EWISTSTVIYVAYSLITRYGKSQQVTRLLEDFDWVFVPTLNPDGYVYTWESDRLWRKNRQ  324
            EWI  +T +Y+ + L+T YG+  ++T LL+D D   +P +NPDGY YT  +DRLWRKNR 
Sbjct  59   EWIGPATALYLIHQLLTNYGRDPEITELLDDTDIYILPVVNPDGYEYTHTTDRLWRKNRS  118

Query  325  PTSLHFCPGIDLDRAWEFQWDGERTRSNPCSENYAGTEPFEGTEAHQLAQWALNETQTNN  384
              +   C G+DL+R +   W+     SNPCSE Y G  PF   E   +A +       + 
Sbjct  119  NANGSSCIGVDLNRNFPDHWNEVGASSNPCSETYRGPAPFSEPETRAVADF-----IRSK  173

Query  385  AKIVGFLDLHSYSQQILYPFSFSCSSVPPTLESLEELGIGLAKVIRLTTHEIYDVTAACE  444
               V ++ LHSYSQ +LYP+ ++    PP  E L+ L    AK ++              
Sbjct  174  KPFVLYISLHSYSQVLLYPYGYTRDEPPPDDEELKSLARAAAKALQKMVRGTSY-----T  228

Query  445  GTITADDQARNSPPQRPIFPTGGSSGGSALDWFYHQLHTDYAYQIKLRDRGSYGFLLPSE  504
              IT             I+P  G S     DW Y +L   Y+Y I+LRD G YGFLLP+ 
Sbjct  229  YGITNGAT---------IYPASGGS----DDWAYGRLGIKYSYTIELRDTGRYGFLLPAS  275

Query  505  YIVPTGKEIFN  515
             I+PT +E + 
Sbjct  276  QIIPTAEETWE  286



Lambda      K        H        a         alpha
   0.319    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 738247432


Query= TCONS_00011616

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459730 pfam00246, Peptidase_M14, Zinc carboxypeptidase            286     3e-93


>CDD:459730 pfam00246, Peptidase_M14, Zinc carboxypeptidase.  
Length=287

 Score = 286 bits (733),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 108/311 (35%), Positives = 161/311 (52%), Gaps = 25/311 (8%)

Query  205  IVPWMRLMASMFSSHVQMINVGVSHEGREIPALRLGRTRGQTADPYPRKTIVVVGGSHAR  264
            I  W+  +A+ +   V+++++G S EGR +  L++  + G       +  + + GG HAR
Sbjct  1    IEAWLDALAARYPDLVRLVSIGKSVEGRPLKVLKI--SSGPGEHNPGKPAVFIDGGIHAR  58

Query  265  EWISTSTVIYVAYSLITRYGKSQQVTRLLEDFDWVFVPTLNPDGYVYTWESDRLWRKNRQ  324
            EWI  +T +Y+ + L+T YG+  ++T LL+D D   +P +NPDGY YT  +DRLWRKNR 
Sbjct  59   EWIGPATALYLIHQLLTNYGRDPEITELLDDTDIYILPVVNPDGYEYTHTTDRLWRKNRS  118

Query  325  PTSLHFCPGIDLDRAWEFQWDGERTRSNPCSENYAGTEPFEGTEAHQLAQWALNETQTNN  384
              +   C G+DL+R +   W+     SNPCSE Y G  PF   E   +A +       + 
Sbjct  119  NANGSSCIGVDLNRNFPDHWNEVGASSNPCSETYRGPAPFSEPETRAVADF-----IRSK  173

Query  385  AKIVGFLDLHSYSQQILYPFSFSCSSVPPTLESLEELGIGLAKVIRLTTHEIYDVTAACE  444
               V ++ LHSYSQ +LYP+ ++    PP  E L+ L    AK ++              
Sbjct  174  KPFVLYISLHSYSQVLLYPYGYTRDEPPPDDEELKSLARAAAKALQKMVRGTSY-----T  228

Query  445  GTITADDQARNSPPQRPIFPTGGSSGGSALDWFYHQLHTDYAYQIKLRDRGSYGFLLPSE  504
              IT             I+P  G S     DW Y +L   Y+Y I+LRD G YGFLLP+ 
Sbjct  229  YGITNGAT---------IYPASGGS----DDWAYGRLGIKYSYTIELRDTGRYGFLLPAS  275

Query  505  YIVPTGKEIFN  515
             I+PT +E + 
Sbjct  276  QIIPTAEETWE  286



Lambda      K        H        a         alpha
   0.319    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 738247432


Query= TCONS_00011618

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00017797

Length=317


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00017799

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00017798

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00017802

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00017801

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00017800

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00011620

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00011623

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.144    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00011622

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.144    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00011624

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397758 pfam03824, NicO, High-affinity nickel-transport protei...  196     4e-60


>CDD:397758 pfam03824, NicO, High-affinity nickel-transport protein.  High 
affinity nickel transporters involved in the incorporation 
of nickel into H2-uptake hydrogenase and urease enzymes. Essential 
for the expression of catalytically active hydrogenase 
and urease. Ion uptake is dependent on proton motive force. 
HoxN in Alcaligenes eutrophus is thought to be an integral 
membrane protein with seven transmembrane helices. The family 
also includes a cobalt transporter.
Length=287

 Score = 196 bits (501),  Expect = 4e-60, Method: Composition-based stats.
 Identities = 95/207 (46%), Positives = 131/207 (63%), Gaps = 1/207 (0%)

Query  91   AVLAYTLGLRHAFDADHISAIDLMTRRLLATGQQPVTVGTFFSLGHSTIVIITSIVVAAT  150
              LAYTLGLRHA DADH +AID + R+L+  G+ P+ VG FFSLGHS +V + ++++A  
Sbjct  5    IGLAYTLGLRHAVDADHGAAIDNVIRKLMQAGKTPLKVGVFFSLGHSLVVGLVAVLLAVA  64

Query  151  AAAVSSRFDSFSTVGGIIGTSVSAAFLILLGLMNFYILYKLYKQMQKVLSLPEGQEDEAW  210
               +     S + +G  IGT +SA+FL+L+GL N+ IL KL +  +K+    +   D   
Sbjct  65   VMLIL-NLPSLTMIGSTIGTEISASFLLLIGLGNWIILRKLRRLFRKLRRGRQPAPDLEA  123

Query  211  KIEGGGVLFNVLKRMFKLINRPWKMYPLGILFGLGFDTSSEIALLGISSIEAARGTDFWV  270
             ++  G L  +   +F+LI + W MYP+G LFGLGFDT++EIALL IS   A +G  F+ 
Sbjct  124  LLQDRGSLSRIFGPLFRLITKSWHMYPVGFLFGLGFDTATEIALLAISPSRALKGIPFYW  183

Query  271  ILIFPILFTAGMCLLDTTDGALMLSLY  297
            IL  P LF AGM L DT DG LM + Y
Sbjct  184  ILALPALFAAGMRLCDTADGVLMFAAY  210



Lambda      K        H        a         alpha
   0.322    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00011625

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00011626

Length=317


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00011627

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397758 pfam03824, NicO, High-affinity nickel-transport protei...  196     4e-60


>CDD:397758 pfam03824, NicO, High-affinity nickel-transport protein.  High 
affinity nickel transporters involved in the incorporation 
of nickel into H2-uptake hydrogenase and urease enzymes. Essential 
for the expression of catalytically active hydrogenase 
and urease. Ion uptake is dependent on proton motive force. 
HoxN in Alcaligenes eutrophus is thought to be an integral 
membrane protein with seven transmembrane helices. The family 
also includes a cobalt transporter.
Length=287

 Score = 196 bits (501),  Expect = 4e-60, Method: Composition-based stats.
 Identities = 95/207 (46%), Positives = 131/207 (63%), Gaps = 1/207 (0%)

Query  91   AVLAYTLGLRHAFDADHISAIDLMTRRLLATGQQPVTVGTFFSLGHSTIVIITSIVVAAT  150
              LAYTLGLRHA DADH +AID + R+L+  G+ P+ VG FFSLGHS +V + ++++A  
Sbjct  5    IGLAYTLGLRHAVDADHGAAIDNVIRKLMQAGKTPLKVGVFFSLGHSLVVGLVAVLLAVA  64

Query  151  AAAVSSRFDSFSTVGGIIGTSVSAAFLILLGLMNFYILYKLYKQMQKVLSLPEGQEDEAW  210
               +     S + +G  IGT +SA+FL+L+GL N+ IL KL +  +K+    +   D   
Sbjct  65   VMLIL-NLPSLTMIGSTIGTEISASFLLLIGLGNWIILRKLRRLFRKLRRGRQPAPDLEA  123

Query  211  KIEGGGVLFNVLKRMFKLINRPWKMYPLGILFGLGFDTSSEIALLGISSIEAARGTDFWV  270
             ++  G L  +   +F+LI + W MYP+G LFGLGFDT++EIALL IS   A +G  F+ 
Sbjct  124  LLQDRGSLSRIFGPLFRLITKSWHMYPVGFLFGLGFDTATEIALLAISPSRALKGIPFYW  183

Query  271  ILIFPILFTAGMCLLDTTDGALMLSLY  297
            IL  P LF AGM L DT DG LM + Y
Sbjct  184  ILALPALFAAGMRLCDTADGVLMFAAY  210



Lambda      K        H        a         alpha
   0.322    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00017803

Length=317


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00017805

Length=317


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00017804

Length=317


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00011621

Length=317


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00017806

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397758 pfam03824, NicO, High-affinity nickel-transport protei...  189     1e-58


>CDD:397758 pfam03824, NicO, High-affinity nickel-transport protein.  High 
affinity nickel transporters involved in the incorporation 
of nickel into H2-uptake hydrogenase and urease enzymes. Essential 
for the expression of catalytically active hydrogenase 
and urease. Ion uptake is dependent on proton motive force. 
HoxN in Alcaligenes eutrophus is thought to be an integral 
membrane protein with seven transmembrane helices. The family 
also includes a cobalt transporter.
Length=287

 Score = 189 bits (482),  Expect = 1e-58, Method: Composition-based stats.
 Identities = 95/207 (46%), Positives = 131/207 (63%), Gaps = 1/207 (0%)

Query  84   AVLAYTLGLRHAFDADHISAIDLMTRRLLATGQQPVTVGTFFSLGHSTIVIITSIVVAAT  143
              LAYTLGLRHA DADH +AID + R+L+  G+ P+ VG FFSLGHS +V + ++++A  
Sbjct  5    IGLAYTLGLRHAVDADHGAAIDNVIRKLMQAGKTPLKVGVFFSLGHSLVVGLVAVLLAVA  64

Query  144  AAAVSSRFDSFSTVGGIIGTSVSAAFLILLGLMNFYILYKLYKQMQKVLSLPEGQEDEAW  203
               +     S + +G  IGT +SA+FL+L+GL N+ IL KL +  +K+    +   D   
Sbjct  65   VMLIL-NLPSLTMIGSTIGTEISASFLLLIGLGNWIILRKLRRLFRKLRRGRQPAPDLEA  123

Query  204  KIEGGGVLFNVLKRMFKLINRPWKMYPLGILFGLGFDTSSEIALLGISSIEAARGTDFWV  263
             ++  G L  +   +F+LI + W MYP+G LFGLGFDT++EIALL IS   A +G  F+ 
Sbjct  124  LLQDRGSLSRIFGPLFRLITKSWHMYPVGFLFGLGFDTATEIALLAISPSRALKGIPFYW  183

Query  264  ILIFPILFTAGMCLLDTTDGALMLSLY  290
            IL  P LF AGM L DT DG LM + Y
Sbjct  184  ILALPALFAAGMRLCDTADGVLMFAAY  210



Lambda      K        H        a         alpha
   0.325    0.139    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00017807

Length=974
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating...  125     5e-35
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  72.3    5e-16


>CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating ATPase 
N-terminal.  PhoLip_ATPase_N is found at the N-terminus of 
a number of phospholipid-translocating ATPases. It is found 
in higher eukaryotes.
Length=67

 Score = 125 bits (317),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 49/67 (73%), Gaps = 0/67 (0%)

Query  233  ITLNNPPANAVHKFVDNHVSTAKYNIVTFIPKFLFEQFSKYANLFFLFTAVLQQIPSVSP  292
            + +N+P  N+  K+  N +ST+KY ++TF+PK LFEQF + ANL+FL  A+LQ IP +SP
Sbjct  1    VYINDPEKNSEFKYPSNKISTSKYTLLTFLPKNLFEQFRRVANLYFLLIAILQLIPGISP  60

Query  293  TNRYTTI  299
            T  YTTI
Sbjct  61   TGPYTTI  67


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 72.3 bits (178),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 31/101 (31%), Positives = 45/101 (45%), Gaps = 15/101 (15%)

Query  679  ATCHTVIPERNAADPDKIKYQAASPDEGALVEGAAALGYRFTNRRPRSVLFTTNGQEYEY  738
            A C++   + N  +          P E AL+  A  +G                    +Y
Sbjct  1    ALCNSAAFDEN--EEKGKWEIVGDPTESALLVFAEKMGI------------DVEELRKDY  46

Query  739  ELLAVCEFNSTRKRMSTIFRCP-DGKIRIYTKGADTVILER  778
              +A   FNS RKRMST+ + P DGK R++ KGA  +IL+R
Sbjct  47   PRVAEIPFNSDRKRMSTVHKLPDDGKYRLFVKGAPEIILDR  87



Lambda      K        H        a         alpha
   0.317    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1243139128


Query= TCONS_00017808

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397758 pfam03824, NicO, High-affinity nickel-transport protei...  159     5e-47


>CDD:397758 pfam03824, NicO, High-affinity nickel-transport protein.  High 
affinity nickel transporters involved in the incorporation 
of nickel into H2-uptake hydrogenase and urease enzymes. Essential 
for the expression of catalytically active hydrogenase 
and urease. Ion uptake is dependent on proton motive force. 
HoxN in Alcaligenes eutrophus is thought to be an integral 
membrane protein with seven transmembrane helices. The family 
also includes a cobalt transporter.
Length=287

 Score = 159 bits (404),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 78/183 (43%), Positives = 112/183 (61%), Gaps = 1/183 (1%)

Query  2    TRRLLATGQQPVTVGTFFSLGHSTIVIITSIVVAATAAAVSSRFDSFSTVGGIIGTSVSA  61
             R+L+  G+ P+ VG FFSLGHS +V + ++++A     +     S + +G  IGT +SA
Sbjct  29   IRKLMQAGKTPLKVGVFFSLGHSLVVGLVAVLLAVAVMLIL-NLPSLTMIGSTIGTEISA  87

Query  62   AFLILLGLMNFYILYKLYKQMQKVLSLPEGQEDEAWKIEGGGVLFNVLKRMFKLINRPWK  121
            +FL+L+GL N+ IL KL +  +K+    +   D    ++  G L  +   +F+LI + W 
Sbjct  88   SFLLLIGLGNWIILRKLRRLFRKLRRGRQPAPDLEALLQDRGSLSRIFGPLFRLITKSWH  147

Query  122  MYPLGILFGLGFDTSSEIALLGISSIEAARGTDFWVILIFPILFTAGMCLLDTTDGALML  181
            MYP+G LFGLGFDT++EIALL IS   A +G  F+ IL  P LF AGM L DT DG LM 
Sbjct  148  MYPVGFLFGLGFDTATEIALLAISPSRALKGIPFYWILALPALFAAGMRLCDTADGVLMF  207

Query  182  SLY  184
            + Y
Sbjct  208  AAY  210



Lambda      K        H        a         alpha
   0.322    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00011629

Length=974
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating...  125     5e-35
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  72.3    5e-16


>CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating ATPase 
N-terminal.  PhoLip_ATPase_N is found at the N-terminus of 
a number of phospholipid-translocating ATPases. It is found 
in higher eukaryotes.
Length=67

 Score = 125 bits (317),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 49/67 (73%), Gaps = 0/67 (0%)

Query  233  ITLNNPPANAVHKFVDNHVSTAKYNIVTFIPKFLFEQFSKYANLFFLFTAVLQQIPSVSP  292
            + +N+P  N+  K+  N +ST+KY ++TF+PK LFEQF + ANL+FL  A+LQ IP +SP
Sbjct  1    VYINDPEKNSEFKYPSNKISTSKYTLLTFLPKNLFEQFRRVANLYFLLIAILQLIPGISP  60

Query  293  TNRYTTI  299
            T  YTTI
Sbjct  61   TGPYTTI  67


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 72.3 bits (178),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 31/101 (31%), Positives = 45/101 (45%), Gaps = 15/101 (15%)

Query  679  ATCHTVIPERNAADPDKIKYQAASPDEGALVEGAAALGYRFTNRRPRSVLFTTNGQEYEY  738
            A C++   + N  +          P E AL+  A  +G                    +Y
Sbjct  1    ALCNSAAFDEN--EEKGKWEIVGDPTESALLVFAEKMGI------------DVEELRKDY  46

Query  739  ELLAVCEFNSTRKRMSTIFRCP-DGKIRIYTKGADTVILER  778
              +A   FNS RKRMST+ + P DGK R++ KGA  +IL+R
Sbjct  47   PRVAEIPFNSDRKRMSTVHKLPDDGKYRLFVKGAPEIILDR  87



Lambda      K        H        a         alpha
   0.317    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1243139128


Query= TCONS_00011630

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397758 pfam03824, NicO, High-affinity nickel-transport protei...  196     4e-60


>CDD:397758 pfam03824, NicO, High-affinity nickel-transport protein.  High 
affinity nickel transporters involved in the incorporation 
of nickel into H2-uptake hydrogenase and urease enzymes. Essential 
for the expression of catalytically active hydrogenase 
and urease. Ion uptake is dependent on proton motive force. 
HoxN in Alcaligenes eutrophus is thought to be an integral 
membrane protein with seven transmembrane helices. The family 
also includes a cobalt transporter.
Length=287

 Score = 196 bits (501),  Expect = 4e-60, Method: Composition-based stats.
 Identities = 95/207 (46%), Positives = 131/207 (63%), Gaps = 1/207 (0%)

Query  91   AVLAYTLGLRHAFDADHISAIDLMTRRLLATGQQPVTVGTFFSLGHSTIVIITSIVVAAT  150
              LAYTLGLRHA DADH +AID + R+L+  G+ P+ VG FFSLGHS +V + ++++A  
Sbjct  5    IGLAYTLGLRHAVDADHGAAIDNVIRKLMQAGKTPLKVGVFFSLGHSLVVGLVAVLLAVA  64

Query  151  AAAVSSRFDSFSTVGGIIGTSVSAAFLILLGLMNFYILYKLYKQMQKVLSLPEGQEDEAW  210
               +     S + +G  IGT +SA+FL+L+GL N+ IL KL +  +K+    +   D   
Sbjct  65   VMLIL-NLPSLTMIGSTIGTEISASFLLLIGLGNWIILRKLRRLFRKLRRGRQPAPDLEA  123

Query  211  KIEGGGVLFNVLKRMFKLINRPWKMYPLGILFGLGFDTSSEIALLGISSIEAARGTDFWV  270
             ++  G L  +   +F+LI + W MYP+G LFGLGFDT++EIALL IS   A +G  F+ 
Sbjct  124  LLQDRGSLSRIFGPLFRLITKSWHMYPVGFLFGLGFDTATEIALLAISPSRALKGIPFYW  183

Query  271  ILIFPILFTAGMCLLDTTDGALMLSLY  297
            IL  P LF AGM L DT DG LM + Y
Sbjct  184  ILALPALFAAGMRLCDTADGVLMFAAY  210



Lambda      K        H        a         alpha
   0.322    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00017809

Length=299
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397758 pfam03824, NicO, High-affinity nickel-transport protei...  158     2e-47


>CDD:397758 pfam03824, NicO, High-affinity nickel-transport protein.  High 
affinity nickel transporters involved in the incorporation 
of nickel into H2-uptake hydrogenase and urease enzymes. Essential 
for the expression of catalytically active hydrogenase 
and urease. Ion uptake is dependent on proton motive force. 
HoxN in Alcaligenes eutrophus is thought to be an integral 
membrane protein with seven transmembrane helices. The family 
also includes a cobalt transporter.
Length=287

 Score = 158 bits (402),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 120/207 (58%), Gaps = 17/207 (8%)

Query  91   AVLAYTLGLRHAFDADHISVRPKQSVARQLSNIIQAIDLMTRRLLATGQQPVTVGTFFSL  150
              LAYTLGLRHA DADH +                AID + R+L+  G+ P+ VG FFSL
Sbjct  5    IGLAYTLGLRHAVDADHGA----------------AIDNVIRKLMQAGKTPLKVGVFFSL  48

Query  151  GHSTIVIITSIVVAATAAAVSSRFDSFSTVGGIIGTSVSAAFLILLGLMNFYILYKLYKQ  210
            GHS +V + ++++A     +     S + +G  IGT +SA+FL+L+GL N+ IL KL + 
Sbjct  49   GHSLVVGLVAVLLAVAVMLIL-NLPSLTMIGSTIGTEISASFLLLIGLGNWIILRKLRRL  107

Query  211  MQKVLSLPEGQEDEAWKIEGGGVLFNVLKRMFKLINRPWKMYPLGILFGLGFDTSSEIAL  270
             +K+    +   D    ++  G L  +   +F+LI + W MYP+G LFGLGFDT++EIAL
Sbjct  108  FRKLRRGRQPAPDLEALLQDRGSLSRIFGPLFRLITKSWHMYPVGFLFGLGFDTATEIAL  167

Query  271  LGISSIEAARGTDFWVILIFPILFTGG  297
            L IS   A +G  F+ IL  P LF  G
Sbjct  168  LAISPSRALKGIPFYWILALPALFAAG  194



Lambda      K        H        a         alpha
   0.324    0.138    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00017810

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397758 pfam03824, NicO, High-affinity nickel-transport protei...  196     4e-60


>CDD:397758 pfam03824, NicO, High-affinity nickel-transport protein.  High 
affinity nickel transporters involved in the incorporation 
of nickel into H2-uptake hydrogenase and urease enzymes. Essential 
for the expression of catalytically active hydrogenase 
and urease. Ion uptake is dependent on proton motive force. 
HoxN in Alcaligenes eutrophus is thought to be an integral 
membrane protein with seven transmembrane helices. The family 
also includes a cobalt transporter.
Length=287

 Score = 196 bits (501),  Expect = 4e-60, Method: Composition-based stats.
 Identities = 95/207 (46%), Positives = 131/207 (63%), Gaps = 1/207 (0%)

Query  91   AVLAYTLGLRHAFDADHISAIDLMTRRLLATGQQPVTVGTFFSLGHSTIVIITSIVVAAT  150
              LAYTLGLRHA DADH +AID + R+L+  G+ P+ VG FFSLGHS +V + ++++A  
Sbjct  5    IGLAYTLGLRHAVDADHGAAIDNVIRKLMQAGKTPLKVGVFFSLGHSLVVGLVAVLLAVA  64

Query  151  AAAVSSRFDSFSTVGGIIGTSVSAAFLILLGLMNFYILYKLYKQMQKVLSLPEGQEDEAW  210
               +     S + +G  IGT +SA+FL+L+GL N+ IL KL +  +K+    +   D   
Sbjct  65   VMLIL-NLPSLTMIGSTIGTEISASFLLLIGLGNWIILRKLRRLFRKLRRGRQPAPDLEA  123

Query  211  KIEGGGVLFNVLKRMFKLINRPWKMYPLGILFGLGFDTSSEIALLGISSIEAARGTDFWV  270
             ++  G L  +   +F+LI + W MYP+G LFGLGFDT++EIALL IS   A +G  F+ 
Sbjct  124  LLQDRGSLSRIFGPLFRLITKSWHMYPVGFLFGLGFDTATEIALLAISPSRALKGIPFYW  183

Query  271  ILIFPILFTAGMCLLDTTDGALMLSLY  297
            IL  P LF AGM L DT DG LM + Y
Sbjct  184  ILALPALFAAGMRLCDTADGVLMFAAY  210



Lambda      K        H        a         alpha
   0.322    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00011631

Length=974
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating...  125     5e-35
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  72.3    5e-16


>CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating ATPase 
N-terminal.  PhoLip_ATPase_N is found at the N-terminus of 
a number of phospholipid-translocating ATPases. It is found 
in higher eukaryotes.
Length=67

 Score = 125 bits (317),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 49/67 (73%), Gaps = 0/67 (0%)

Query  233  ITLNNPPANAVHKFVDNHVSTAKYNIVTFIPKFLFEQFSKYANLFFLFTAVLQQIPSVSP  292
            + +N+P  N+  K+  N +ST+KY ++TF+PK LFEQF + ANL+FL  A+LQ IP +SP
Sbjct  1    VYINDPEKNSEFKYPSNKISTSKYTLLTFLPKNLFEQFRRVANLYFLLIAILQLIPGISP  60

Query  293  TNRYTTI  299
            T  YTTI
Sbjct  61   TGPYTTI  67


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 72.3 bits (178),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 31/101 (31%), Positives = 45/101 (45%), Gaps = 15/101 (15%)

Query  679  ATCHTVIPERNAADPDKIKYQAASPDEGALVEGAAALGYRFTNRRPRSVLFTTNGQEYEY  738
            A C++   + N  +          P E AL+  A  +G                    +Y
Sbjct  1    ALCNSAAFDEN--EEKGKWEIVGDPTESALLVFAEKMGI------------DVEELRKDY  46

Query  739  ELLAVCEFNSTRKRMSTIFRCP-DGKIRIYTKGADTVILER  778
              +A   FNS RKRMST+ + P DGK R++ KGA  +IL+R
Sbjct  47   PRVAEIPFNSDRKRMSTVHKLPDDGKYRLFVKGAPEIILDR  87



Lambda      K        H        a         alpha
   0.317    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1243139128


Query= TCONS_00017811

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397758 pfam03824, NicO, High-affinity nickel-transport protei...  159     5e-47


>CDD:397758 pfam03824, NicO, High-affinity nickel-transport protein.  High 
affinity nickel transporters involved in the incorporation 
of nickel into H2-uptake hydrogenase and urease enzymes. Essential 
for the expression of catalytically active hydrogenase 
and urease. Ion uptake is dependent on proton motive force. 
HoxN in Alcaligenes eutrophus is thought to be an integral 
membrane protein with seven transmembrane helices. The family 
also includes a cobalt transporter.
Length=287

 Score = 159 bits (404),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 78/183 (43%), Positives = 112/183 (61%), Gaps = 1/183 (1%)

Query  2    TRRLLATGQQPVTVGTFFSLGHSTIVIITSIVVAATAAAVSSRFDSFSTVGGIIGTSVSA  61
             R+L+  G+ P+ VG FFSLGHS +V + ++++A     +     S + +G  IGT +SA
Sbjct  29   IRKLMQAGKTPLKVGVFFSLGHSLVVGLVAVLLAVAVMLIL-NLPSLTMIGSTIGTEISA  87

Query  62   AFLILLGLMNFYILYKLYKQMQKVLSLPEGQEDEAWKIEGGGVLFNVLKRMFKLINRPWK  121
            +FL+L+GL N+ IL KL +  +K+    +   D    ++  G L  +   +F+LI + W 
Sbjct  88   SFLLLIGLGNWIILRKLRRLFRKLRRGRQPAPDLEALLQDRGSLSRIFGPLFRLITKSWH  147

Query  122  MYPLGILFGLGFDTSSEIALLGISSIEAARGTDFWVILIFPILFTAGMCLLDTTDGALML  181
            MYP+G LFGLGFDT++EIALL IS   A +G  F+ IL  P LF AGM L DT DG LM 
Sbjct  148  MYPVGFLFGLGFDTATEIALLAISPSRALKGIPFYWILALPALFAAGMRLCDTADGVLMF  207

Query  182  SLY  184
            + Y
Sbjct  208  AAY  210



Lambda      K        H        a         alpha
   0.322    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00017812

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397758 pfam03824, NicO, High-affinity nickel-transport protei...  182     1e-54


>CDD:397758 pfam03824, NicO, High-affinity nickel-transport protein.  High 
affinity nickel transporters involved in the incorporation 
of nickel into H2-uptake hydrogenase and urease enzymes. Essential 
for the expression of catalytically active hydrogenase 
and urease. Ion uptake is dependent on proton motive force. 
HoxN in Alcaligenes eutrophus is thought to be an integral 
membrane protein with seven transmembrane helices. The family 
also includes a cobalt transporter.
Length=287

 Score = 182 bits (464),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 90/207 (43%), Positives = 124/207 (60%), Gaps = 1/207 (0%)

Query  91   AVLAYTLGLRHAFDADHISVRPKQSVARLATGQQPVTVGTFFSLGHSTIVIITSIVVAAT  150
              LAYTLGLRHA DADH +         +  G+ P+ VG FFSLGHS +V + ++++A  
Sbjct  5    IGLAYTLGLRHAVDADHGAAIDNVIRKLMQAGKTPLKVGVFFSLGHSLVVGLVAVLLAVA  64

Query  151  AAAVSSRFDSFSTVGGIIGTSVSAAFLILLGLMNFYILYKLYKQMQKVLSLPEGQEDEAW  210
               +     S + +G  IGT +SA+FL+L+GL N+ IL KL +  +K+    +   D   
Sbjct  65   VMLIL-NLPSLTMIGSTIGTEISASFLLLIGLGNWIILRKLRRLFRKLRRGRQPAPDLEA  123

Query  211  KIEGGGVLFNVLKRMFKLINRPWKMYPLGILFGLGFDTSSEIALLGISSIEAARGTDFWV  270
             ++  G L  +   +F+LI + W MYP+G LFGLGFDT++EIALL IS   A +G  F+ 
Sbjct  124  LLQDRGSLSRIFGPLFRLITKSWHMYPVGFLFGLGFDTATEIALLAISPSRALKGIPFYW  183

Query  271  ILIFPILFTAGMCLLDTTDGALMLSLY  297
            IL  P LF AGM L DT DG LM + Y
Sbjct  184  ILALPALFAAGMRLCDTADGVLMFAAY  210



Lambda      K        H        a         alpha
   0.322    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00011632

Length=974
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating...  125     5e-35
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  72.3    5e-16


>CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating ATPase 
N-terminal.  PhoLip_ATPase_N is found at the N-terminus of 
a number of phospholipid-translocating ATPases. It is found 
in higher eukaryotes.
Length=67

 Score = 125 bits (317),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 49/67 (73%), Gaps = 0/67 (0%)

Query  233  ITLNNPPANAVHKFVDNHVSTAKYNIVTFIPKFLFEQFSKYANLFFLFTAVLQQIPSVSP  292
            + +N+P  N+  K+  N +ST+KY ++TF+PK LFEQF + ANL+FL  A+LQ IP +SP
Sbjct  1    VYINDPEKNSEFKYPSNKISTSKYTLLTFLPKNLFEQFRRVANLYFLLIAILQLIPGISP  60

Query  293  TNRYTTI  299
            T  YTTI
Sbjct  61   TGPYTTI  67


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 72.3 bits (178),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 31/101 (31%), Positives = 45/101 (45%), Gaps = 15/101 (15%)

Query  679  ATCHTVIPERNAADPDKIKYQAASPDEGALVEGAAALGYRFTNRRPRSVLFTTNGQEYEY  738
            A C++   + N  +          P E AL+  A  +G                    +Y
Sbjct  1    ALCNSAAFDEN--EEKGKWEIVGDPTESALLVFAEKMGI------------DVEELRKDY  46

Query  739  ELLAVCEFNSTRKRMSTIFRCP-DGKIRIYTKGADTVILER  778
              +A   FNS RKRMST+ + P DGK R++ KGA  +IL+R
Sbjct  47   PRVAEIPFNSDRKRMSTVHKLPDDGKYRLFVKGAPEIILDR  87



Lambda      K        H        a         alpha
   0.317    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1243139128


Query= TCONS_00011633

Length=974
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating...  125     5e-35
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  72.3    5e-16


>CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating ATPase 
N-terminal.  PhoLip_ATPase_N is found at the N-terminus of 
a number of phospholipid-translocating ATPases. It is found 
in higher eukaryotes.
Length=67

 Score = 125 bits (317),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 49/67 (73%), Gaps = 0/67 (0%)

Query  233  ITLNNPPANAVHKFVDNHVSTAKYNIVTFIPKFLFEQFSKYANLFFLFTAVLQQIPSVSP  292
            + +N+P  N+  K+  N +ST+KY ++TF+PK LFEQF + ANL+FL  A+LQ IP +SP
Sbjct  1    VYINDPEKNSEFKYPSNKISTSKYTLLTFLPKNLFEQFRRVANLYFLLIAILQLIPGISP  60

Query  293  TNRYTTI  299
            T  YTTI
Sbjct  61   TGPYTTI  67


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 72.3 bits (178),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 31/101 (31%), Positives = 45/101 (45%), Gaps = 15/101 (15%)

Query  679  ATCHTVIPERNAADPDKIKYQAASPDEGALVEGAAALGYRFTNRRPRSVLFTTNGQEYEY  738
            A C++   + N  +          P E AL+  A  +G                    +Y
Sbjct  1    ALCNSAAFDEN--EEKGKWEIVGDPTESALLVFAEKMGI------------DVEELRKDY  46

Query  739  ELLAVCEFNSTRKRMSTIFRCP-DGKIRIYTKGADTVILER  778
              +A   FNS RKRMST+ + P DGK R++ KGA  +IL+R
Sbjct  47   PRVAEIPFNSDRKRMSTVHKLPDDGKYRLFVKGAPEIILDR  87



Lambda      K        H        a         alpha
   0.317    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1243139128


Query= TCONS_00011634

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00017814

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428176 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control ...  273     5e-94


>CDD:428176 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein. 
 This family represents Cwf15/Cwc15 (from Schizosaccharomyces 
pombe and Saccharomyces cerevisiae respectively) and their 
homologs. The function of these proteins is unknown, but 
they form part of the spliceosome and are thus thought to be 
involved in mRNA splicing.
Length=244

 Score = 273 bits (701),  Expect = 5e-94, Method: Composition-based stats.
 Identities = 149/254 (59%), Positives = 179/254 (70%), Gaps = 32/254 (13%)

Query  1    MTTAHRPTFDPAQGKEALRGPA--YHQRLLPAYTHLKTRQLGQGSEAEVRQRDLRAELLQ  58
            MTTAHRPT+DPA+GKEALRGP+  Y  R LPA+T LK RQ GQG+EAE+ +RDLRAEL +
Sbjct  1    MTTAHRPTWDPARGKEALRGPSRQYSSRDLPAHTKLKFRQPGQGTEAELEKRDLRAELEE  60

Query  59   AEAAHFAKKNGVPINEPVTESAAPKRLLEGGPPDGANEAEEEDPEAKRRR--ILEETREI  116
            AEAAHFAKK G        + A             A   E+++ EAKRRR  ILEETREI
Sbjct  61   AEAAHFAKKRGGAGLLAPEDPAI----------GAAEGDEDDEEEAKRRRLEILEETREI  110

Query  117  DADSEGSEDDSSEEESDDEDE-------------AAELMRELEKIKRERLEQKEKEERER  163
            DAD +  +D   +E+S+ +D+              AEL+RELEKIKRER E+K +EERER
Sbjct  111  DADDDDDDDSDDDEDSESDDDDDSDSDDDDDEDETAELLRELEKIKRERAEEKAREERER  170

Query  164  AAKEEEQREYDIARGNPLLNPQ-----DFNLKRRWDDDVVFKNQARGTEEKRGKEFVNDL  218
            AA+EEEQRE +IA GNPLLN +     DF +KRRWDDDVVFKNQARG E+K  K FVNDL
Sbjct  171  AAEEEEQREEEIATGNPLLNLESGQSGDFTVKRRWDDDVVFKNQARGEEDKGKKRFVNDL  230

Query  219  LRSDFHKRFMSKYV  232
            LRSDFHK+FM+KY+
Sbjct  231  LRSDFHKKFMNKYI  244



Lambda      K        H        a         alpha
   0.309    0.129    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00011636

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0743    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00017815

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428176 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control ...  183     2e-58


>CDD:428176 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein. 
 This family represents Cwf15/Cwc15 (from Schizosaccharomyces 
pombe and Saccharomyces cerevisiae respectively) and their 
homologs. The function of these proteins is unknown, but 
they form part of the spliceosome and are thus thought to be 
involved in mRNA splicing.
Length=244

 Score = 183 bits (467),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 92/176 (52%), Positives = 114/176 (65%), Gaps = 27/176 (15%)

Query  1    MTTAHRPTFDPAQGKEALRGPA--YHQRLLPAYTHLKTRQLGQGSEAEVRQRDLRAELLQ  58
            MTTAHRPT+DPA+GKEALRGP+  Y  R LPA+T LK RQ GQG+EAE+ +RDLRAEL +
Sbjct  1    MTTAHRPTWDPARGKEALRGPSRQYSSRDLPAHTKLKFRQPGQGTEAELEKRDLRAELEE  60

Query  59   AEAAHFAKKNGVPINEPVTESAAPKRLLEGGPPDGANEAEEEDPEAKRRR--ILEETREI  116
            AEAAHFAKK G        + A             A   E+++ EAKRRR  ILEETREI
Sbjct  61   AEAAHFAKKRGGAGLLAPEDPAI----------GAAEGDEDDEEEAKRRRLEILEETREI  110

Query  117  DADSEGSEDDSSEEESDDEDE-------------AAELMRELEKIKRERLEQKEKE  159
            DAD +  +D   +E+S+ +D+              AEL+RELEKIKRER E+K +E
Sbjct  111  DADDDDDDDSDDDEDSESDDDDDSDSDDDDDEDETAELLRELEKIKRERAEEKARE  166



Lambda      K        H        a         alpha
   0.310    0.129    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00011635

Length=132
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428176 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control ...  148     1e-46


>CDD:428176 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein. 
 This family represents Cwf15/Cwc15 (from Schizosaccharomyces 
pombe and Saccharomyces cerevisiae respectively) and their 
homologs. The function of these proteins is unknown, but 
they form part of the spliceosome and are thus thought to be 
involved in mRNA splicing.
Length=244

 Score = 148 bits (377),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 74/135 (55%), Positives = 90/135 (67%), Gaps = 14/135 (10%)

Query  1    MTTAHRPTFDPAQGKEALRGPA--YHQRLLPAYTHLKTRQLGQGSEAEVRQRDLRAELLQ  58
            MTTAHRPT+DPA+GKEALRGP+  Y  R LPA+T LK RQ GQG+EAE+ +RDLRAEL +
Sbjct  1    MTTAHRPTWDPARGKEALRGPSRQYSSRDLPAHTKLKFRQPGQGTEAELEKRDLRAELEE  60

Query  59   AEAAHFAKKNGVPINEPVTESAAPKRLLEGGPPDGANEAEEEDPEAKRRR--ILEETREI  116
            AEAAHFAKK G        + A             A   E+++ EAKRRR  ILEETREI
Sbjct  61   AEAAHFAKKRGGAGLLAPEDPAI----------GAAEGDEDDEEEAKRRRLEILEETREI  110

Query  117  DADSEGSEDDSSEEE  131
            DAD +  +D   +E+
Sbjct  111  DADDDDDDDSDDDED  125



Lambda      K        H        a         alpha
   0.307    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00011637

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428176 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control ...  267     1e-91


>CDD:428176 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein. 
 This family represents Cwf15/Cwc15 (from Schizosaccharomyces 
pombe and Saccharomyces cerevisiae respectively) and their 
homologs. The function of these proteins is unknown, but 
they form part of the spliceosome and are thus thought to be 
involved in mRNA splicing.
Length=244

 Score = 267 bits (686),  Expect = 1e-91, Method: Composition-based stats.
 Identities = 147/250 (59%), Positives = 175/250 (70%), Gaps = 32/250 (13%)

Query  1    MTTAHRPTFDPAQGKEALRGPA--YHQRLLPAYTHLKTRQLGQGSEAEVRQRDLRAELLQ  58
            MTTAHRPT+DPA+GKEALRGP+  Y  R LPA+T LK RQ GQG+EAE+ +RDLRAEL +
Sbjct  1    MTTAHRPTWDPARGKEALRGPSRQYSSRDLPAHTKLKFRQPGQGTEAELEKRDLRAELEE  60

Query  59   AEAAHFAKKNGVPINEPVTESAAPKRLLEGGPPDGANEAEEEDPEAKRRR--ILEETREI  116
            AEAAHFAKK G        + A             A   E+++ EAKRRR  ILEETREI
Sbjct  61   AEAAHFAKKRGGAGLLAPEDPAI----------GAAEGDEDDEEEAKRRRLEILEETREI  110

Query  117  DADSEGSEDDSSEEESDDEDE-------------AAELMRELEKIKRERLEQKEKEERER  163
            DAD +  +D   +E+S+ +D+              AEL+RELEKIKRER E+K +EERER
Sbjct  111  DADDDDDDDSDDDEDSESDDDDDSDSDDDDDEDETAELLRELEKIKRERAEEKAREERER  170

Query  164  AAKEEEQREYDIARGNPLLNPQ-----DFNLKRRWDDDVVFKNQARGTEEKRGKEFVNDL  218
            AA+EEEQRE +IA GNPLLN +     DF +KRRWDDDVVFKNQARG E+K  K FVNDL
Sbjct  171  AAEEEEQREEEIATGNPLLNLESGQSGDFTVKRRWDDDVVFKNQARGEEDKGKKRFVNDL  230

Query  219  LRSDFHKRFM  228
            LRSDFHK+FM
Sbjct  231  LRSDFHKKFM  240



Lambda      K        H        a         alpha
   0.310    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00017816

Length=92
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428176 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control ...  138     2e-43


>CDD:428176 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein. 
 This family represents Cwf15/Cwc15 (from Schizosaccharomyces 
pombe and Saccharomyces cerevisiae respectively) and their 
homologs. The function of these proteins is unknown, but 
they form part of the spliceosome and are thus thought to be 
involved in mRNA splicing.
Length=244

 Score = 138 bits (351),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 70/96 (73%), Positives = 81/96 (84%), Gaps = 5/96 (5%)

Query  1    MRELEKIKRERLEQKEKEERERAAKEEEQREYDIARGNPLLNPQ-----DFNLKRRWDDD  55
            +RELEKIKRER E+K +EERERAA+EEEQRE +IA GNPLLN +     DF +KRRWDDD
Sbjct  149  LRELEKIKRERAEEKAREERERAAEEEEQREEEIATGNPLLNLESGQSGDFTVKRRWDDD  208

Query  56   VVFKNQARGTEEKRGKEFVNDLLRSDFHKRFMSKYV  91
            VVFKNQARG E+K  K FVNDLLRSDFHK+FM+KY+
Sbjct  209  VVFKNQARGEEDKGKKRFVNDLLRSDFHKKFMNKYI  244



Lambda      K        H        a         alpha
   0.315    0.134    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00017817

Length=737
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425802 pfam00654, Voltage_CLC, Voltage gated chloride channel...  243     2e-74


>CDD:425802 pfam00654, Voltage_CLC, Voltage gated chloride channel.  This 
family of ion channels contains 10 or 12 transmembrane helices. 
Each protein forms a single pore. It has been shown that 
some members of this family form homodimers. In terms of primary 
structure, they are unrelated to known cation channels 
or other types of anion channels. Three ClC subfamilies are 
found in animals. ClC-1 is involved in setting and restoring 
the resting membrane potential of skeletal muscle, while 
other channels play important parts in solute concentration 
mechanisms in the kidney. These proteins contain two pfam00571 
domains.
Length=344

 Score = 243 bits (622),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 123/376 (33%), Positives = 179/376 (48%), Gaps = 49/376 (13%)

Query  350  AAGSGVAEVKVINSGFVLHGYLGFKTLVIKTIALVFSVSSGLSLGKEGPYVHIGACVGNI  409
            AAGSG+ EVK    G    G L  + L +K +  V ++ SGLSLG+EGP V IGA +G+ 
Sbjct  16   AAGSGIPEVKAALHGG--RGPLPLRVLPVKFLGTVLTLGSGLSLGREGPSVQIGAAIGSG  73

Query  410  ACRLFSKYNDNDGKRREVLSASAASGVAVAFGAPIGGVLFSLEEVSYYFPPKTLFRTFFC  469
              R   + +  D  RR +L+A AA+G+A AF AP+ GVLF+LEE+S  F  + L      
Sbjct  74   LGRRLFRLSPRD--RRILLAAGAAAGLAAAFNAPLAGVLFALEELSRSFSLRALIPVLLA  131

Query  470  CIAAALSLKFLNPYGTGKIVLFQVRYVTDWEIFEIVVFALLGVLGGAAGALFIKASSLWA  529
             + AA     ++    G   LF V       + E+ +F LLG+L G  GALF +   L  
Sbjct  132  SVVAA----LVSRLIFGNSPLFSVGEPGSLSLLELPLFILLGILCGLLGALFNR-LLLKV  186

Query  530  KSFRKLSIIKRWPMLEVILVALVTGVVSFWNRYAKLPVSELLFELASPCDPESVTSTGLC  589
            +   +  ++K  P+L   L  L+ G++         P                V   G  
Sbjct  187  QRLFR-KLLKIPPVLRPALGGLLVGLLGLL-----FP---------------EVLGGGYE  225

Query  590  PTEDGIGE--IISDLLVAFVIKSLLTVVTFGIKVPAGIYVPSMVVGGLMGRIVGHVVQFL  647
              +        +S LL+  ++K L T ++ G   P GI+ PS+ +G  +GR  G ++  L
Sbjct  226  LIQLLFNGNTSLSLLLLLLLLKFLATALSLGSGAPGGIFAPSLAIGAALGRAFGLLLALL  285

Query  648  VVKFPNFFLFSTCPVYSGMESCVVPGVYAMVAAGATMCGVTRLSVTLAVILFELTGSLDH  707
               FP                 + PG +A+V   A +  VTR  +T  VI+FELTGSL  
Sbjct  286  ---FPIG--------------GLPPGAFALVGMAAFLAAVTRAPLTAIVIVFELTGSLQL  328

Query  708  VLPFSLAVLCAKWTAD  723
            +LP  LAVL A   + 
Sbjct  329  LLPLMLAVLIAYAVSR  344



Lambda      K        H        a         alpha
   0.321    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 935662736


Query= TCONS_00011638

Length=737
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425802 pfam00654, Voltage_CLC, Voltage gated chloride channel...  243     2e-74


>CDD:425802 pfam00654, Voltage_CLC, Voltage gated chloride channel.  This 
family of ion channels contains 10 or 12 transmembrane helices. 
Each protein forms a single pore. It has been shown that 
some members of this family form homodimers. In terms of primary 
structure, they are unrelated to known cation channels 
or other types of anion channels. Three ClC subfamilies are 
found in animals. ClC-1 is involved in setting and restoring 
the resting membrane potential of skeletal muscle, while 
other channels play important parts in solute concentration 
mechanisms in the kidney. These proteins contain two pfam00571 
domains.
Length=344

 Score = 243 bits (622),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 123/376 (33%), Positives = 179/376 (48%), Gaps = 49/376 (13%)

Query  350  AAGSGVAEVKVINSGFVLHGYLGFKTLVIKTIALVFSVSSGLSLGKEGPYVHIGACVGNI  409
            AAGSG+ EVK    G    G L  + L +K +  V ++ SGLSLG+EGP V IGA +G+ 
Sbjct  16   AAGSGIPEVKAALHGG--RGPLPLRVLPVKFLGTVLTLGSGLSLGREGPSVQIGAAIGSG  73

Query  410  ACRLFSKYNDNDGKRREVLSASAASGVAVAFGAPIGGVLFSLEEVSYYFPPKTLFRTFFC  469
              R   + +  D  RR +L+A AA+G+A AF AP+ GVLF+LEE+S  F  + L      
Sbjct  74   LGRRLFRLSPRD--RRILLAAGAAAGLAAAFNAPLAGVLFALEELSRSFSLRALIPVLLA  131

Query  470  CIAAALSLKFLNPYGTGKIVLFQVRYVTDWEIFEIVVFALLGVLGGAAGALFIKASSLWA  529
             + AA     ++    G   LF V       + E+ +F LLG+L G  GALF +   L  
Sbjct  132  SVVAA----LVSRLIFGNSPLFSVGEPGSLSLLELPLFILLGILCGLLGALFNR-LLLKV  186

Query  530  KSFRKLSIIKRWPMLEVILVALVTGVVSFWNRYAKLPVSELLFELASPCDPESVTSTGLC  589
            +   +  ++K  P+L   L  L+ G++         P                V   G  
Sbjct  187  QRLFR-KLLKIPPVLRPALGGLLVGLLGLL-----FP---------------EVLGGGYE  225

Query  590  PTEDGIGE--IISDLLVAFVIKSLLTVVTFGIKVPAGIYVPSMVVGGLMGRIVGHVVQFL  647
              +        +S LL+  ++K L T ++ G   P GI+ PS+ +G  +GR  G ++  L
Sbjct  226  LIQLLFNGNTSLSLLLLLLLLKFLATALSLGSGAPGGIFAPSLAIGAALGRAFGLLLALL  285

Query  648  VVKFPNFFLFSTCPVYSGMESCVVPGVYAMVAAGATMCGVTRLSVTLAVILFELTGSLDH  707
               FP                 + PG +A+V   A +  VTR  +T  VI+FELTGSL  
Sbjct  286  ---FPIG--------------GLPPGAFALVGMAAFLAAVTRAPLTAIVIVFELTGSLQL  328

Query  708  VLPFSLAVLCAKWTAD  723
            +LP  LAVL A   + 
Sbjct  329  LLPLMLAVLIAYAVSR  344



Lambda      K        H        a         alpha
   0.321    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 935662736


Query= TCONS_00011639

Length=128
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461845 pfam06179, Med22, Surfeit locus protein 5 subunit 22 o...  63.7    6e-15


>CDD:461845 pfam06179, Med22, Surfeit locus protein 5 subunit 22 of Mediator 
complex.  This family consists of several eukaryotic Surfeit 
locus protein 5 (SURF5) sequences. The human Surfeit locus 
has been mapped on chromosome 9q34.1. The locus includes 
six tightly clustered housekeeping genes (Surf1-6), and the 
gene organisation is similar in human, mouse and chicken Surfeit 
locus. The Med22 subunit of Mediator complex is part of 
the essential core head region.
Length=101

 Score = 63.7 bits (156),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 51/103 (50%), Gaps = 13/103 (13%)

Query  13   RINANISQLLQRFENIMATATVPVAQWLTSVSQVENTSHTAT-AVETYQLDVESTALVRA  71
            R++ +I  +L  F  ++  A V            E   + +T A E Y+++V +  LVRA
Sbjct  2    RLDDDIESILDNFRELIKLAKV----------NDEGQRNNSTQAQEGYEMEVRAANLVRA  51

Query  72   AEDILSLTRTMKEAWLFGKLDTLGEDEADVKRREQLESNAEAI  114
             E +L LTR +KE W+     +L E      R EQL+++ E +
Sbjct  52   IESLLKLTRELKELWILNDFPSLNEAIKQ--REEQLDADVEEL  92



Lambda      K        H        a         alpha
   0.311    0.123    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00017818

Length=737
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425802 pfam00654, Voltage_CLC, Voltage gated chloride channel...  243     2e-74


>CDD:425802 pfam00654, Voltage_CLC, Voltage gated chloride channel.  This 
family of ion channels contains 10 or 12 transmembrane helices. 
Each protein forms a single pore. It has been shown that 
some members of this family form homodimers. In terms of primary 
structure, they are unrelated to known cation channels 
or other types of anion channels. Three ClC subfamilies are 
found in animals. ClC-1 is involved in setting and restoring 
the resting membrane potential of skeletal muscle, while 
other channels play important parts in solute concentration 
mechanisms in the kidney. These proteins contain two pfam00571 
domains.
Length=344

 Score = 243 bits (622),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 123/376 (33%), Positives = 179/376 (48%), Gaps = 49/376 (13%)

Query  350  AAGSGVAEVKVINSGFVLHGYLGFKTLVIKTIALVFSVSSGLSLGKEGPYVHIGACVGNI  409
            AAGSG+ EVK    G    G L  + L +K +  V ++ SGLSLG+EGP V IGA +G+ 
Sbjct  16   AAGSGIPEVKAALHGG--RGPLPLRVLPVKFLGTVLTLGSGLSLGREGPSVQIGAAIGSG  73

Query  410  ACRLFSKYNDNDGKRREVLSASAASGVAVAFGAPIGGVLFSLEEVSYYFPPKTLFRTFFC  469
              R   + +  D  RR +L+A AA+G+A AF AP+ GVLF+LEE+S  F  + L      
Sbjct  74   LGRRLFRLSPRD--RRILLAAGAAAGLAAAFNAPLAGVLFALEELSRSFSLRALIPVLLA  131

Query  470  CIAAALSLKFLNPYGTGKIVLFQVRYVTDWEIFEIVVFALLGVLGGAAGALFIKASSLWA  529
             + AA     ++    G   LF V       + E+ +F LLG+L G  GALF +   L  
Sbjct  132  SVVAA----LVSRLIFGNSPLFSVGEPGSLSLLELPLFILLGILCGLLGALFNR-LLLKV  186

Query  530  KSFRKLSIIKRWPMLEVILVALVTGVVSFWNRYAKLPVSELLFELASPCDPESVTSTGLC  589
            +   +  ++K  P+L   L  L+ G++         P                V   G  
Sbjct  187  QRLFR-KLLKIPPVLRPALGGLLVGLLGLL-----FP---------------EVLGGGYE  225

Query  590  PTEDGIGE--IISDLLVAFVIKSLLTVVTFGIKVPAGIYVPSMVVGGLMGRIVGHVVQFL  647
              +        +S LL+  ++K L T ++ G   P GI+ PS+ +G  +GR  G ++  L
Sbjct  226  LIQLLFNGNTSLSLLLLLLLLKFLATALSLGSGAPGGIFAPSLAIGAALGRAFGLLLALL  285

Query  648  VVKFPNFFLFSTCPVYSGMESCVVPGVYAMVAAGATMCGVTRLSVTLAVILFELTGSLDH  707
               FP                 + PG +A+V   A +  VTR  +T  VI+FELTGSL  
Sbjct  286  ---FPIG--------------GLPPGAFALVGMAAFLAAVTRAPLTAIVIVFELTGSLQL  328

Query  708  VLPFSLAVLCAKWTAD  723
            +LP  LAVL A   + 
Sbjct  329  LLPLMLAVLIAYAVSR  344



Lambda      K        H        a         alpha
   0.321    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 935662736


Query= TCONS_00017819

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00011641

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00011642

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00011643

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            104     2e-25


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 104 bits (262),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 75/380 (20%), Positives = 136/380 (36%), Gaps = 42/380 (11%)

Query  58   ACMATLTAASITPAY-EDIAIEFGKSVQSASYLTSLQIAILGGAPLFWKPLSNRFGRRPI  116
            A +A L  + + PA    +A + G S      L +L       A      LS+RFGRR +
Sbjct  5    AFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRV  64

Query  117  FLLSLIISLICNVGCAKSPTYGSMAACRALVAFFISPAAAIGSAVVTETFFKKERAKYMG  176
             L+ L++  +  +    + +   +   R L             A++ + F  +ER + +G
Sbjct  65   LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALG  124

Query  177  VWTLMVTLGVPVGPLIFGFVAYRVGYRWIYWVLAIVNGVQFILYLFFGPETLYLGGSEES  236
            + +    LG  +GPL+ G +A   G+R  + +LAI++ +  +L L   P           
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAE  184

Query  237  LSADFKSQYLSFRRIDSTPLRPSEFYHPLTLVKHARVFLPAIVYAMVFLFGSVLITVEVP  296
             +                                    L  ++  ++F F    +   +P
Sbjct  185  EARLSLIVAWKALLR--------------------DPVLWLLLALLLFGFAFFGLLTYLP  224

Query  297  QLLQLKFGLNAEQLGLQFLGVIIGSILGEQVGGSLSDFWMNHRARRIQRRPEPEYRLWLT  356
             L Q   GL+A   GL      +   +G  + G LSD            R     RL L 
Sbjct  225  -LYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSD------------RLGRRRRLLLA  271

Query  357  YPGVILTIVGVIVFLVCTQQALEGHWVVSPIVGTAIAAFGNQLVTTTVITYAVDNYPQD-  415
               +IL  +G+++  +           +  ++   +  FG  LV   +     D  P++ 
Sbjct  272  LLLLILAALGLLLLSLT-------LSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEE  324

Query  416  SGSVGVFITFVRQMWGFIGP  435
             G+          + G +GP
Sbjct  325  RGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.141    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598144560


Query= TCONS_00011644

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            117     7e-30


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 117 bits (296),  Expect = 7e-30, Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 138/380 (36%), Gaps = 42/380 (11%)

Query  97   ACMATLTAASITPAY-EDIAIEFGKSVQSASYLTSLQIAILGGAPLFWKPLSNRFGRRPI  155
            A +A L  + + PA    +A + G S      L +L       A      LS+RFGRR +
Sbjct  5    AFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRV  64

Query  156  FLLSLIISLICNVGCAKSPTYGSMAACRALVAFFISPAAAIGSAVVTETFFKKERAKYMG  215
             L+ L++  +  +    + +   +   R L             A++ + F  +ER + +G
Sbjct  65   LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALG  124

Query  216  VWTLMVTLGVPVGPLIFGFVAYRVGYRWIYWVLAIVNGVQFILYLFFGPETLYLGGSEES  275
            + +    LG  +GPL+ G +A   G+R  + +LAI++ +  +L L   P           
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES-------  177

Query  276  LSADFKSQYLSFRRIDSTPLRPSEFYHPLTLVKHARVFLPAIVYAMVFLFGSVLITVEVP  335
                        +R                 +    V    ++  ++F F    +   +P
Sbjct  178  ------------KRPKPAEEARLSLIVAWKALLRDPVLW-LLLALLLFGFAFFGLLTYLP  224

Query  336  QLLQLKFGLNAEQLGLQFLGVIIGSILGEQVGGSLSDFWMNHRARRIQRRPEPEYRLWLT  395
             L Q   GL+A   GL      +   +G  + G LSD            R     RL L 
Sbjct  225  -LYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSD------------RLGRRRRLLLA  271

Query  396  YPGVILTIVGVIVFLVCTQQALEGHWVVSPIVGTAIAAFGNQLVTTTVITYAVDNYPQD-  454
               +IL  +G+++  +           +  ++   +  FG  LV   +     D  P++ 
Sbjct  272  LLLLILAALGLLLLSLT-------LSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEE  324

Query  455  SGSVGVFITFVRQMWGFIGP  474
             G+          + G +GP
Sbjct  325  RGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 648020248


Query= TCONS_00017820

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00011646

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463889 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrola...  96.5    4e-25
CDD:459892 pfam00657, Lipase_GDSL, GDSL-like Lipase/Acylhydrolase     73.4    3e-16


>CDD:463889 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family. 
 This family of presumed lipases and related enzymes are 
similar to pfam00657.
Length=176

 Score = 96.5 bits (240),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 64/209 (31%), Gaps = 36/209 (17%)

Query  22   LFGDSITQMSSDQSMGFGFQPALQDAYHRRLD---VINRGFGGYSTAHAVKVFPKFFPKP  78
              GDSIT           +   L     RRL    V N G  G +T        +     
Sbjct  1    ALGDSITAGYGATGGDRSYPGWLARLLARRLGADVVNNLGISGATTRLD---LLERLDDV  57

Query  79   ETATVRFMAIFFGANDAAVPGHYQHVPVETYKENLKKIIQHPATVAQNPRILILTPPPVN  138
                   + I  G ND       + V       NL+ +I        + R+L++ P PV 
Sbjct  58   LRLKPDLVVILLGTNDLG-----RGVSAARAAANLEALIDALRAAGPDARVLLIGPLPVG  112

Query  139  EYQLEEFDIAKNTPHPSRTVKQTKLYAEAAREVAASLGVAVVDLWTTFMTAAGWKEGEPL  198
                 +           R   +   Y  A REVAA  GV  VDLW       GW      
Sbjct  113  PPPPLDER---------RLNARIAEYNAAIREVAAERGVPYVDLWDALRDDGGWLP----  159

Query  199  IGSRDAPNNEKLQSFFTDGLHFTGDGYRL  227
                             DGLH    GYRL
Sbjct  160  ------------DLLADDGLHPNAAGYRL  176


>CDD:459892 pfam00657, Lipase_GDSL, GDSL-like Lipase/Acylhydrolase.  
Length=210

 Score = 73.4 bits (180),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 66/233 (28%), Gaps = 45/233 (19%)

Query  21   ILFGDSITQMSSDQSMG-FGFQPALQDAYHRRLDVINRGFGGY-----------STAHAV  68
            + FGDS+T    D   G F +   L D   R+L V   G+                   +
Sbjct  2    VAFGDSLTDGGGDGPGGRFSWGDLLADFLARKLGVPGSGYNHGANFAIGGATIEDLPIQL  61

Query  69   KVFPKFFPKPETATVR-FMAIFFGANDAAVPGH-------YQHVPVETYKENLKKIIQHP  120
            +   +     +       + IF GAND                  ++  + NL ++    
Sbjct  62   EQLLRLISDVKDQAKPDLVTIFIGANDLCNFLSSPARSKKRVPDLLDELRANLPQLGLGA  121

Query  121  ATV-AQNPRILILTPPPVNEYQLEEFDIAKNTPHPSRTVKQTKLYAEAAREVAASLGVAV  179
                      L  TPP                 +  R  +     A AA +      V  
Sbjct  122  RKFWVHGLGPLGCTPPKGCYELYNAL----AEEYNERLNELVNSLAAAAED----ANVVY  173

Query  180  VDLWTTFMTAAGWKEGEPLIGSRDAPNNEKLQSFFTDGLHFTGDGYRLMYEEV  232
            VD++               IG               DGLH +  GY+ + E +
Sbjct  174  VDIYGFEDPTDPCCG----IGLEP------------DGLHPSEKGYKAVAEAI  210



Lambda      K        H        a         alpha
   0.318    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00011647

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00011648

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463889 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrola...  70.3    4e-16
CDD:459892 pfam00657, Lipase_GDSL, GDSL-like Lipase/Acylhydrolase     58.0    2e-11


>CDD:463889 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family. 
 This family of presumed lipases and related enzymes are 
similar to pfam00657.
Length=176

 Score = 70.3 bits (172),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 47/142 (33%), Gaps = 30/142 (21%)

Query  1    MTIFFGANDAAVPGHYQHVPVETYKENLKKIIQHPATVAQNPRILILTPPPVNEYQLEEF  60
            + I  G ND       + V       NL+ +I        + R+L++ P PV      + 
Sbjct  65   VVILLGTNDLG-----RGVSAARAAANLEALIDALRAAGPDARVLLIGPLPVGPPPPLDE  119

Query  61   DIAKNTPHPSRTVKQTKLYAEAAREVAASLGVAVVDLWTTFMTAAGWKEGEPLIGSRDAP  120
                      R   +   Y  A REVAA  GV  VDLW       GW             
Sbjct  120  R---------RLNARIAEYNAAIREVAAERGVPYVDLWDALRDDGGWLP-----------  159

Query  121  NNEKLQSFFTDGLHFTGDGYRL  142
                      DGLH    GYRL
Sbjct  160  -----DLLADDGLHPNAAGYRL  176


>CDD:459892 pfam00657, Lipase_GDSL, GDSL-like Lipase/Acylhydrolase.  
Length=210

 Score = 58.0 bits (140),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 29/154 (19%), Positives = 43/154 (28%), Gaps = 32/154 (21%)

Query  2    TIFFGANDAAVPGH-------YQHVPVETYKENLKKIIQHPATV-AQNPRILILTPPPVN  53
            TIF GAND                  ++  + NL ++              L  TPP   
Sbjct  81   TIFIGANDLCNFLSSPARSKKRVPDLLDELRANLPQLGLGARKFWVHGLGPLGCTPPKGC  140

Query  54   EYQLEEFDIAKNTPHPSRTVKQTKLYAEAAREVAASLGVAVVDLWTTFMTAAGWKEGEPL  113
                          +  R  +     A AA +      V  VD++               
Sbjct  141  YELYNAL----AEEYNERLNELVNSLAAAAED----ANVVYVDIYGFEDPTDPCCG----  188

Query  114  IGSRDAPNNEKLQSFFTDGLHFTGDGYRLMYEEV  147
            IG               DGLH +  GY+ + E +
Sbjct  189  IGLEP------------DGLHPSEKGYKAVAEAI  210



Lambda      K        H        a         alpha
   0.317    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00017821

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463889 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrola...  95.7    6e-25
CDD:459892 pfam00657, Lipase_GDSL, GDSL-like Lipase/Acylhydrolase     73.0    4e-16


>CDD:463889 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family. 
 This family of presumed lipases and related enzymes are 
similar to pfam00657.
Length=176

 Score = 95.7 bits (238),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 64/209 (31%), Gaps = 36/209 (17%)

Query  22   LFGDSITQMSSDQSMGFGFQPALQDGYHRRLD---VINRGFGGYSTAHAVKVFPKFFPKP  78
              GDSIT           +   L     RRL    V N G  G +T        +     
Sbjct  1    ALGDSITAGYGATGGDRSYPGWLARLLARRLGADVVNNLGISGATTRLD---LLERLDDV  57

Query  79   ETATVRFMAIFFGANDAAVPGHYQHVPVETYKENLKKIIQHPATVAQNPRILILTPPPVN  138
                   + I  G ND       + V       NL+ +I        + R+L++ P PV 
Sbjct  58   LRLKPDLVVILLGTNDLG-----RGVSAARAAANLEALIDALRAAGPDARVLLIGPLPVG  112

Query  139  EYQLEEFDIAKNTPHPSRTVKQTKLYAEAAREVAASLGVAVVDLWTTFMTAAGWKEGEPL  198
                 +           R   +   Y  A REVAA  GV  VDLW       GW      
Sbjct  113  PPPPLDER---------RLNARIAEYNAAIREVAAERGVPYVDLWDALRDDGGWLP----  159

Query  199  IGSRDAPNNEKLQSFFTDGLHFTGDGYRL  227
                             DGLH    GYRL
Sbjct  160  ------------DLLADDGLHPNAAGYRL  176


>CDD:459892 pfam00657, Lipase_GDSL, GDSL-like Lipase/Acylhydrolase.  
Length=210

 Score = 73.0 bits (179),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 66/233 (28%), Gaps = 45/233 (19%)

Query  21   ILFGDSITQMSSDQSMG-FGFQPALQDGYHRRLDVINRGFGGY-----------STAHAV  68
            + FGDS+T    D   G F +   L D   R+L V   G+                   +
Sbjct  2    VAFGDSLTDGGGDGPGGRFSWGDLLADFLARKLGVPGSGYNHGANFAIGGATIEDLPIQL  61

Query  69   KVFPKFFPKPETATVR-FMAIFFGANDAAVPGH-------YQHVPVETYKENLKKIIQHP  120
            +   +     +       + IF GAND                  ++  + NL ++    
Sbjct  62   EQLLRLISDVKDQAKPDLVTIFIGANDLCNFLSSPARSKKRVPDLLDELRANLPQLGLGA  121

Query  121  ATV-AQNPRILILTPPPVNEYQLEEFDIAKNTPHPSRTVKQTKLYAEAAREVAASLGVAV  179
                      L  TPP                 +  R  +     A AA +      V  
Sbjct  122  RKFWVHGLGPLGCTPPKGCYELYNAL----AEEYNERLNELVNSLAAAAED----ANVVY  173

Query  180  VDLWTTFMTAAGWKEGEPLIGSRDAPNNEKLQSFFTDGLHFTGDGYRLMYEEV  232
            VD++               IG               DGLH +  GY+ + E +
Sbjct  174  VDIYGFEDPTDPCCG----IGLEP------------DGLHPSEKGYKAVAEAI  210



Lambda      K        H        a         alpha
   0.318    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00011649

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463889 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrola...  70.3    4e-16
CDD:459892 pfam00657, Lipase_GDSL, GDSL-like Lipase/Acylhydrolase     58.0    2e-11


>CDD:463889 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family. 
 This family of presumed lipases and related enzymes are 
similar to pfam00657.
Length=176

 Score = 70.3 bits (172),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 47/142 (33%), Gaps = 30/142 (21%)

Query  1    MTIFFGANDAAVPGHYQHVPVETYKENLKKIIQHPATVAQNPRILILTPPPVNEYQLEEF  60
            + I  G ND       + V       NL+ +I        + R+L++ P PV      + 
Sbjct  65   VVILLGTNDLG-----RGVSAARAAANLEALIDALRAAGPDARVLLIGPLPVGPPPPLDE  119

Query  61   DIAKNTPHPSRTVKQTKLYAEAAREVAASLGVAVVDLWTTFMTAAGWKEGEPLIGSRDAP  120
                      R   +   Y  A REVAA  GV  VDLW       GW             
Sbjct  120  R---------RLNARIAEYNAAIREVAAERGVPYVDLWDALRDDGGWLP-----------  159

Query  121  NNEKLQSFFTDGLHFTGDGYRL  142
                      DGLH    GYRL
Sbjct  160  -----DLLADDGLHPNAAGYRL  176


>CDD:459892 pfam00657, Lipase_GDSL, GDSL-like Lipase/Acylhydrolase.  
Length=210

 Score = 58.0 bits (140),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 29/154 (19%), Positives = 43/154 (28%), Gaps = 32/154 (21%)

Query  2    TIFFGANDAAVPGH-------YQHVPVETYKENLKKIIQHPATV-AQNPRILILTPPPVN  53
            TIF GAND                  ++  + NL ++              L  TPP   
Sbjct  81   TIFIGANDLCNFLSSPARSKKRVPDLLDELRANLPQLGLGARKFWVHGLGPLGCTPPKGC  140

Query  54   EYQLEEFDIAKNTPHPSRTVKQTKLYAEAAREVAASLGVAVVDLWTTFMTAAGWKEGEPL  113
                          +  R  +     A AA +      V  VD++               
Sbjct  141  YELYNAL----AEEYNERLNELVNSLAAAAED----ANVVYVDIYGFEDPTDPCCG----  188

Query  114  IGSRDAPNNEKLQSFFTDGLHFTGDGYRLMYEEV  147
            IG               DGLH +  GY+ + E +
Sbjct  189  IGLEP------------DGLHPSEKGYKAVAEAI  210



Lambda      K        H        a         alpha
   0.317    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00017822

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease. This f...  66.6    9e-14


>CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease.  This family 
of proteins are related to pfam00665 and are probably endonucleases 
of the DDE superfamily. Transposase proteins are necessary 
for efficient DNA transposition. This domain is a member 
of the DDE superfamily, which contain three carboxylate 
residues that are believed to be responsible for coordinating 
metal ions needed for catalysis. The catalytic activity of 
this enzyme involves DNA cleavage at a specific site followed 
by a strand transfer reaction. Interestingly this family 
also includes the CENP-B protein. This domain in that protein 
appears to have lost the metal binding residues and is unlikely 
to have endonuclease activity. Centromere Protein B (CENP-B) 
is a DNA-binding protein localized to the centromere.
Length=177

 Score = 66.6 bits (163),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 3/102 (3%)

Query  6    NESEALPPDTTIATSPNGWISDELAVQWLQS-FINATNERTKKGEKRILIFDGHGSHLTV  64
            NE    P      ++   W++  +  +WLQ  F      R   G K +L+ DG GSH TV
Sbjct  34   NEKTPKPLPVEYKSNGKAWMTTSIFEEWLQKWFD--PRMRESPGRKVLLLLDGSGSHPTV  91

Query  65   EFLQLCEDNGVIPFGFLPHTTHLCQPLDGKPFLSYKQHFRRM  106
            E ++ C    +       ++T + QPLD     ++K ++RR 
Sbjct  92   ELIRSCGLQNIFLVFLPANSTSILQPLDQGVVSTFKANYRRQ  133



Lambda      K        H        a         alpha
   0.317    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 372672612


Query= TCONS_00011652

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00017823

Length=119
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376404 pfam00857, Isochorismatase, Isochorismatase family. Th...  70.1    8e-17


>CDD:376404 pfam00857, Isochorismatase, Isochorismatase family.  This family 
are hydrolase enzymes.
Length=173

 Score = 70.1 bits (172),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 27/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query  3    TPELDALLPNAKGGETPLDVIIVGIETHICITQTTLDLLERGHRVYVIVDGVSSMNKEER  62
              +LD +L    G +T   +++ G+ T +C+  T  D L+RG+ V V+ D  +S++ E  
Sbjct  100  GTDLDEIL-RELGIDT---LVLAGVATDVCVLSTARDALDRGYEVVVVSDACASLSPEAH  155

Query  63   GVALARLRDAGAVVTSSE  80
              AL RL   GA VT++E
Sbjct  156  DAALERLAQRGAEVTTTE  173



Lambda      K        H        a         alpha
   0.317    0.136    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00011653

Length=549


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00011654

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5. Thi...  168     4e-52
CDD:460415 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon. This doma...  80.3    2e-19


>CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5.  This family 
includes the N-terminus of eIF-5, and the C-terminus of eIF-2 
beta. This region corresponds to the whole of the archaebacterial 
eIF-2 beta homolog. The region contains a putative 
zinc binding C4 finger.
Length=115

 Score = 168 bits (428),  Expect = 4e-52, Method: Composition-based stats.
 Identities = 55/119 (46%), Positives = 80/119 (67%), Gaps = 4/119 (3%)

Query  9    DVTDPFYRYKMERLQSKIEGKGNGIKTVVVNLNSVAQSLSRPPSYVIKYFGFELGAQANA  68
            DVTD FYRYKM   Q K EGKG   KTV+VN + +A++L+R P +V+KY   ELG Q + 
Sbjct  1    DVTDSFYRYKMPPPQVKREGKG---KTVIVNFSEIAKALNRDPEHVLKYLLKELGTQGSI  57

Query  69   KPTDDRWIINGAHDAAKLQDYLDGFIAKFVLCKKCKNPETDVIIKDDKIILDCKACGQR  127
               + R IING   A +++D LD +I ++VLC +C +P+T++I ++  + L C+ACG R
Sbjct  58   D-ENGRLIINGKFSAKQIEDLLDKYIEEYVLCPECGSPDTELIKENRLLFLKCEACGAR  115


>CDD:460415 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon.  This domain of 
unknown function is found at the C-terminus of several translation 
initiation factors.
Length=76

 Score = 80.3 bits (199),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query  336  EKAFLGGTERFLGKDHPELISLVPAVLLGYYQHDLVSEDVLKAWGSKASKKYVDLATSRK  395
            +   L   + F  K   EL+ L+  +L   Y  D+V E+ +  W    S     +    K
Sbjct  1    QVDLLLALQEFCAK-LEELLKLLLKILKALYDLDIVEEEAILKWWEDVSSAEKGMK---K  56

Query  396  VRKAAEPFLDWLENA  410
            VRK A+PF++WLE A
Sbjct  57   VRKQAKPFVEWLEEA  71



Lambda      K        H        a         alpha
   0.312    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00011655

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5. Thi...  168     4e-52
CDD:460415 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon. This doma...  80.3    2e-19


>CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5.  This family 
includes the N-terminus of eIF-5, and the C-terminus of eIF-2 
beta. This region corresponds to the whole of the archaebacterial 
eIF-2 beta homolog. The region contains a putative 
zinc binding C4 finger.
Length=115

 Score = 168 bits (428),  Expect = 4e-52, Method: Composition-based stats.
 Identities = 55/119 (46%), Positives = 80/119 (67%), Gaps = 4/119 (3%)

Query  9    DVTDPFYRYKMERLQSKIEGKGNGIKTVVVNLNSVAQSLSRPPSYVIKYFGFELGAQANA  68
            DVTD FYRYKM   Q K EGKG   KTV+VN + +A++L+R P +V+KY   ELG Q + 
Sbjct  1    DVTDSFYRYKMPPPQVKREGKG---KTVIVNFSEIAKALNRDPEHVLKYLLKELGTQGSI  57

Query  69   KPTDDRWIINGAHDAAKLQDYLDGFIAKFVLCKKCKNPETDVIIKDDKIILDCKACGQR  127
               + R IING   A +++D LD +I ++VLC +C +P+T++I ++  + L C+ACG R
Sbjct  58   D-ENGRLIINGKFSAKQIEDLLDKYIEEYVLCPECGSPDTELIKENRLLFLKCEACGAR  115


>CDD:460415 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon.  This domain of 
unknown function is found at the C-terminus of several translation 
initiation factors.
Length=76

 Score = 80.3 bits (199),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query  336  EKAFLGGTERFLGKDHPELISLVPAVLLGYYQHDLVSEDVLKAWGSKASKKYVDLATSRK  395
            +   L   + F  K   EL+ L+  +L   Y  D+V E+ +  W    S     +    K
Sbjct  1    QVDLLLALQEFCAK-LEELLKLLLKILKALYDLDIVEEEAILKWWEDVSSAEKGMK---K  56

Query  396  VRKAAEPFLDWLENA  410
            VRK A+PF++WLE A
Sbjct  57   VRKQAKPFVEWLEEA  71



Lambda      K        H        a         alpha
   0.312    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00011656

Length=942
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase do...  249     2e-77
CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus. This...  192     3e-57
CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C ...  109     4e-29


>CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain.  
This domain belongs to a more diverse superfamily, including 
pfam01331 and pfam01653.
Length=203

 Score = 249 bits (638),  Expect = 2e-77, Method: Composition-based stats.
 Identities = 102/226 (45%), Positives = 134/226 (59%), Gaps = 25/226 (11%)

Query  550  PMLAKPTKSITEVLNRFEGKNFTCEYKYDGERAQIHYVAPDVVHHYPGAKTTLQKDSKGL  609
            PMLAK  KSI E L +F G  F  EYKYDGERAQIH                  KD   +
Sbjct  1    PMLAKSFKSIEEALKKFGGA-FIAEYKYDGERAQIH------------------KDGDEV  41

Query  610  SAIFSRNSEDLSKKYPDVLAKLETWVKDGVKSFVLDCETVAWDTVNKKVLPFQQLMTRKR  669
              +FSRN E++++ YP+++  L+   K   KSF+LD E VA D    ++LPFQ L  RK+
Sbjct  42   K-LFSRNLENITRHYPEIVEALKEAFKPDEKSFILDGEIVAVDPETGEILPFQVLADRKK  100

Query  670  KDVKAEDV--KVKVCIFAFDLLFLNGEPTVKKTLRERRELLHKSFEVVEGEFQFAQHGDT  727
            K V  E++  KV VC+F FDLL+L+GE      LRERR+LL + F+ + G  Q A+   T
Sbjct  101  KKVDVEELAEKVPVCLFVFDLLYLDGEDLTDLPLRERRKLLEEIFKEIPGRIQLAESIVT  160

Query  728  NDLEEIQNLLDESVKASCEGLMVKMLDTEESGYEPSKRSRNWLKVK  773
             D+EE Q  L+E++    EGL+VK  D   S YEP KR +NWLK+K
Sbjct  161  KDVEEAQEFLEEAISEGLEGLVVKDPD---STYEPGKRGKNWLKIK  203


>CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus.  This region 
is found in many but not all ATP-dependent DNA ligase enzymes 
(EC:6.5.1.1). It is thought to be involved in DNA binding 
and in catalysis. In human DNA ligase I, and in Saccharomyces 
cerevisiae, this region was necessary for catalysis, and 
separated from the amino terminus by targeting elements. In 
vaccinia virus this region was not essential for catalysis, 
but deletion decreases the affinity for nicked DNA and decreased 
the rate of strand joining at a step subsequent to enzyme-adenylate 
formation.
Length=174

 Score = 192 bits (490),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 107/197 (54%), Gaps = 24/197 (12%)

Query  288  PYAALCKTFSLIE-MTTKRLIILAHCSLFLRQVLRLTPQDLLPTVQLMINKLAADYAGIE  346
            P++ L + F  IE  T+ RL   A  + F R V+   P+DL P ++L    L  DY G E
Sbjct  1    PFSLLAELFEKIEATTSSRLEKTAILANFFRSVIGAGPEDLYPALRL----LLPDYDGRE  56

Query  347  LGIGESFIMKAIGESTGRSLAVIKADQHEIGDLGLVAAKSRSNQPTMFKPKPLTVRGVHE  406
             GIGE  + KAI E+ G S   IK    + GDLG VA +  S + T+FKP PLT+  V+E
Sbjct  57   YGIGEKLLAKAIAEALGLSKDSIKDAYRKAGDLGEVAEEVLSKRSTLFKPSPLTIDEVNE  116

Query  407  GLIAIAKIQGQGSQDKKISAIKKLLSAADAATAGKGGKGVDITKDKGGASEAKFIVRFLE  466
             L  +A   G+GSQD+KI  +KKLL  A                      EAK+++R + 
Sbjct  117  LLDKLAAASGKGSQDEKIKILKKLLKRAT-------------------PEEAKYLIRIIL  157

Query  467  GKLRLGLAEKTVLVALA  483
            G LR+GL EKTVL ALA
Sbjct  158  GDLRIGLGEKTVLDALA  174


>CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C terminal 
region.  This region is found in many but not all ATP-dependent 
DNA ligase enzymes (EC:6.5.1.1). It is thought to constitute 
part of the catalytic core of ATP dependent DNA ligase.
Length=94

 Score = 109 bits (275),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 42/118 (36%), Positives = 56/118 (47%), Gaps = 24/118 (20%)

Query  798  RTSVYGAFLLAAYNSSTQTYETICNIGTGFSEALLEELYKELSPLTIDRPKPFYSHSNVP  857
            R   +G+ LL  Y+        +  +GTGF++A LEEL + L PL   +P PF      P
Sbjct  1    RRGGFGSLLLGVYD--DGRLVYVGKVGTGFTDADLEELRERLKPLERKKP-PF--AEPPP  55

Query  858  KDQPDVWFEPRLVWEVKTADLTLSPRYKAAADEFVGTAGGGKGVSLRFPRFIKSRDDK  915
            + +  VW EP LV EV+ A+ T S R                   LRFPRF   R+DK
Sbjct  56   EARGAVWVEPELVAEVEFAEWTRSGR-------------------LRFPRFKGLREDK  94



Lambda      K        H        a         alpha
   0.313    0.130    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1197831096


Query= TCONS_00017824

Length=461


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 569004184


Query= TCONS_00011657

Length=701
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus. This...  192     5e-58
CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase do...  157     1e-44


>CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus.  This region 
is found in many but not all ATP-dependent DNA ligase enzymes 
(EC:6.5.1.1). It is thought to be involved in DNA binding 
and in catalysis. In human DNA ligase I, and in Saccharomyces 
cerevisiae, this region was necessary for catalysis, and 
separated from the amino terminus by targeting elements. In 
vaccinia virus this region was not essential for catalysis, 
but deletion decreases the affinity for nicked DNA and decreased 
the rate of strand joining at a step subsequent to enzyme-adenylate 
formation.
Length=174

 Score = 192 bits (490),  Expect = 5e-58, Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 107/197 (54%), Gaps = 24/197 (12%)

Query  288  PYAALCKTFSLIE-MTTKRLIILAHCSLFLRQVLRLTPQDLLPTVQLMINKLAADYAGIE  346
            P++ L + F  IE  T+ RL   A  + F R V+   P+DL P ++L    L  DY G E
Sbjct  1    PFSLLAELFEKIEATTSSRLEKTAILANFFRSVIGAGPEDLYPALRL----LLPDYDGRE  56

Query  347  LGIGESFIMKAIGESTGRSLAVIKADQHEIGDLGLVAAKSRSNQPTMFKPKPLTVRGVHE  406
             GIGE  + KAI E+ G S   IK    + GDLG VA +  S + T+FKP PLT+  V+E
Sbjct  57   YGIGEKLLAKAIAEALGLSKDSIKDAYRKAGDLGEVAEEVLSKRSTLFKPSPLTIDEVNE  116

Query  407  GLIAIAKIQGQGSQDKKISAIKKLLSAADAATAGKGGKGVDITKDKGGASEAKFIVRFLE  466
             L  +A   G+GSQD+KI  +KKLL  A                      EAK+++R + 
Sbjct  117  LLDKLAAASGKGSQDEKIKILKKLLKRAT-------------------PEEAKYLIRIIL  157

Query  467  GKLRLGLAEKTVLVALA  483
            G LR+GL EKTVL ALA
Sbjct  158  GDLRIGLGEKTVLDALA  174


>CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain.  
This domain belongs to a more diverse superfamily, including 
pfam01331 and pfam01653.
Length=203

 Score = 157 bits (398),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 67/147 (46%), Positives = 87/147 (59%), Gaps = 22/147 (15%)

Query  550  PMLAKPTKSITEVLNRFEGKNFTCEYKYDGERAQIHYVAPDVVHHYPGAKTTLQKDSKGL  609
            PMLAK  KSI E L +F G  F  EYKYDGERAQIH                  KD   +
Sbjct  1    PMLAKSFKSIEEALKKFGGA-FIAEYKYDGERAQIH------------------KDGDEV  41

Query  610  SAIFSRNSEDLSKKYPDVLAKLETWVKDGVKSFVLDCETVAWDTVNKKVLPFQQLMTRKR  669
              +FSRN E++++ YP+++  L+   K   KSF+LD E VA D    ++LPFQ L  RK+
Sbjct  42   K-LFSRNLENITRHYPEIVEALKEAFKPDEKSFILDGEIVAVDPETGEILPFQVLADRKK  100

Query  670  KDVKAEDV--KVKVCIFAFDLLFLNGE  694
            K V  E++  KV VC+F FDLL+L+GE
Sbjct  101  KKVDVEELAEKVPVCLFVFDLLYLDGE  127



Lambda      K        H        a         alpha
   0.312    0.129    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 896672320


Query= TCONS_00017825

Length=701
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus. This...  192     5e-58
CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase do...  157     1e-44


>CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus.  This region 
is found in many but not all ATP-dependent DNA ligase enzymes 
(EC:6.5.1.1). It is thought to be involved in DNA binding 
and in catalysis. In human DNA ligase I, and in Saccharomyces 
cerevisiae, this region was necessary for catalysis, and 
separated from the amino terminus by targeting elements. In 
vaccinia virus this region was not essential for catalysis, 
but deletion decreases the affinity for nicked DNA and decreased 
the rate of strand joining at a step subsequent to enzyme-adenylate 
formation.
Length=174

 Score = 192 bits (490),  Expect = 5e-58, Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 107/197 (54%), Gaps = 24/197 (12%)

Query  288  PYAALCKTFSLIE-MTTKRLIILAHCSLFLRQVLRLTPQDLLPTVQLMINKLAADYAGIE  346
            P++ L + F  IE  T+ RL   A  + F R V+   P+DL P ++L    L  DY G E
Sbjct  1    PFSLLAELFEKIEATTSSRLEKTAILANFFRSVIGAGPEDLYPALRL----LLPDYDGRE  56

Query  347  LGIGESFIMKAIGESTGRSLAVIKADQHEIGDLGLVAAKSRSNQPTMFKPKPLTVRGVHE  406
             GIGE  + KAI E+ G S   IK    + GDLG VA +  S + T+FKP PLT+  V+E
Sbjct  57   YGIGEKLLAKAIAEALGLSKDSIKDAYRKAGDLGEVAEEVLSKRSTLFKPSPLTIDEVNE  116

Query  407  GLIAIAKIQGQGSQDKKISAIKKLLSAADAATAGKGGKGVDITKDKGGASEAKFIVRFLE  466
             L  +A   G+GSQD+KI  +KKLL  A                      EAK+++R + 
Sbjct  117  LLDKLAAASGKGSQDEKIKILKKLLKRAT-------------------PEEAKYLIRIIL  157

Query  467  GKLRLGLAEKTVLVALA  483
            G LR+GL EKTVL ALA
Sbjct  158  GDLRIGLGEKTVLDALA  174


>CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain.  
This domain belongs to a more diverse superfamily, including 
pfam01331 and pfam01653.
Length=203

 Score = 157 bits (398),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 67/147 (46%), Positives = 87/147 (59%), Gaps = 22/147 (15%)

Query  550  PMLAKPTKSITEVLNRFEGKNFTCEYKYDGERAQIHYVAPDVVHHYPGAKTTLQKDSKGL  609
            PMLAK  KSI E L +F G  F  EYKYDGERAQIH                  KD   +
Sbjct  1    PMLAKSFKSIEEALKKFGGA-FIAEYKYDGERAQIH------------------KDGDEV  41

Query  610  SAIFSRNSEDLSKKYPDVLAKLETWVKDGVKSFVLDCETVAWDTVNKKVLPFQQLMTRKR  669
              +FSRN E++++ YP+++  L+   K   KSF+LD E VA D    ++LPFQ L  RK+
Sbjct  42   K-LFSRNLENITRHYPEIVEALKEAFKPDEKSFILDGEIVAVDPETGEILPFQVLADRKK  100

Query  670  KDVKAEDV--KVKVCIFAFDLLFLNGE  694
            K V  E++  KV VC+F FDLL+L+GE
Sbjct  101  KKVDVEELAEKVPVCLFVFDLLYLDGE  127



Lambda      K        H        a         alpha
   0.312    0.129    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 896672320


Query= TCONS_00011659

Length=952
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase do...  249     3e-77
CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus. This...  192     3e-57
CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C ...  109     4e-29


>CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain.  
This domain belongs to a more diverse superfamily, including 
pfam01331 and pfam01653.
Length=203

 Score = 249 bits (637),  Expect = 3e-77, Method: Composition-based stats.
 Identities = 102/226 (45%), Positives = 134/226 (59%), Gaps = 25/226 (11%)

Query  550  PMLAKPTKSITEVLNRFEGKNFTCEYKYDGERAQIHYVAPDVVHHYPGAKTTLQKDSKGL  609
            PMLAK  KSI E L +F G  F  EYKYDGERAQIH                  KD   +
Sbjct  1    PMLAKSFKSIEEALKKFGGA-FIAEYKYDGERAQIH------------------KDGDEV  41

Query  610  SAIFSRNSEDLSKKYPDVLAKLETWVKDGVKSFVLDCETVAWDTVNKKVLPFQQLMTRKR  669
              +FSRN E++++ YP+++  L+   K   KSF+LD E VA D    ++LPFQ L  RK+
Sbjct  42   K-LFSRNLENITRHYPEIVEALKEAFKPDEKSFILDGEIVAVDPETGEILPFQVLADRKK  100

Query  670  KDVKAEDV--KVKVCIFAFDLLFLNGEPTVKKTLRERRELLHKSFEVVEGEFQFAQHGDT  727
            K V  E++  KV VC+F FDLL+L+GE      LRERR+LL + F+ + G  Q A+   T
Sbjct  101  KKVDVEELAEKVPVCLFVFDLLYLDGEDLTDLPLRERRKLLEEIFKEIPGRIQLAESIVT  160

Query  728  NDLEEIQNLLDESVKASCEGLMVKMLDTEESGYEPSKRSRNWLKVK  773
             D+EE Q  L+E++    EGL+VK  D   S YEP KR +NWLK+K
Sbjct  161  KDVEEAQEFLEEAISEGLEGLVVKDPD---STYEPGKRGKNWLKIK  203


>CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus.  This region 
is found in many but not all ATP-dependent DNA ligase enzymes 
(EC:6.5.1.1). It is thought to be involved in DNA binding 
and in catalysis. In human DNA ligase I, and in Saccharomyces 
cerevisiae, this region was necessary for catalysis, and 
separated from the amino terminus by targeting elements. In 
vaccinia virus this region was not essential for catalysis, 
but deletion decreases the affinity for nicked DNA and decreased 
the rate of strand joining at a step subsequent to enzyme-adenylate 
formation.
Length=174

 Score = 192 bits (491),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 107/197 (54%), Gaps = 24/197 (12%)

Query  288  PYAALCKTFSLIE-MTTKRLIILAHCSLFLRQVLRLTPQDLLPTVQLMINKLAADYAGIE  346
            P++ L + F  IE  T+ RL   A  + F R V+   P+DL P ++L    L  DY G E
Sbjct  1    PFSLLAELFEKIEATTSSRLEKTAILANFFRSVIGAGPEDLYPALRL----LLPDYDGRE  56

Query  347  LGIGESFIMKAIGESTGRSLAVIKADQHEIGDLGLVAAKSRSNQPTMFKPKPLTVRGVHE  406
             GIGE  + KAI E+ G S   IK    + GDLG VA +  S + T+FKP PLT+  V+E
Sbjct  57   YGIGEKLLAKAIAEALGLSKDSIKDAYRKAGDLGEVAEEVLSKRSTLFKPSPLTIDEVNE  116

Query  407  GLIAIAKIQGQGSQDKKISAIKKLLSAADAATAGKGGKGVDITKDKGGASEAKFIVRFLE  466
             L  +A   G+GSQD+KI  +KKLL  A                      EAK+++R + 
Sbjct  117  LLDKLAAASGKGSQDEKIKILKKLLKRAT-------------------PEEAKYLIRIIL  157

Query  467  GKLRLGLAEKTVLVALA  483
            G LR+GL EKTVL ALA
Sbjct  158  GDLRIGLGEKTVLDALA  174


>CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C terminal 
region.  This region is found in many but not all ATP-dependent 
DNA ligase enzymes (EC:6.5.1.1). It is thought to constitute 
part of the catalytic core of ATP dependent DNA ligase.
Length=94

 Score = 109 bits (275),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 42/118 (36%), Positives = 56/118 (47%), Gaps = 24/118 (20%)

Query  798  RTSVYGAFLLAAYNSSTQTYETICNIGTGFSEALLEELYKELSPLTIDRPKPFYSHSNVP  857
            R   +G+ LL  Y+        +  +GTGF++A LEEL + L PL   +P PF      P
Sbjct  1    RRGGFGSLLLGVYD--DGRLVYVGKVGTGFTDADLEELRERLKPLERKKP-PF--AEPPP  55

Query  858  KDQPDVWFEPRLVWEVKTADLTLSPRYKAAADEFVGTAGGGKGVSLRFPRFIKSRDDK  915
            + +  VW EP LV EV+ A+ T S R                   LRFPRF   R+DK
Sbjct  56   EARGAVWVEPELVAEVEFAEWTRSGR-------------------LRFPRFKGLREDK  94



Lambda      K        H        a         alpha
   0.313    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0743    0.140     1.90     42.6     43.6 

Effective search space used: 1211989856


Query= TCONS_00017826

Length=461


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 569004184


Query= TCONS_00011660

Length=806
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase do...  246     3e-77
CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus. This...  190     6e-57
CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C ...  109     3e-29


>CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain.  
This domain belongs to a more diverse superfamily, including 
pfam01331 and pfam01653.
Length=203

 Score = 246 bits (630),  Expect = 3e-77, Method: Composition-based stats.
 Identities = 102/226 (45%), Positives = 134/226 (59%), Gaps = 25/226 (11%)

Query  409  PMLAKPTKSITEVLNRFEGKNFTCEYKYDGERAQIHYVAPDVVHHYPGAKTTLQKDSKGL  468
            PMLAK  KSI E L +F G  F  EYKYDGERAQIH                  KD   +
Sbjct  1    PMLAKSFKSIEEALKKFGGA-FIAEYKYDGERAQIH------------------KDGDEV  41

Query  469  SAIFSRNSEDLSKKYPDVLAKLETWVKDGVKSFVLDCETVAWDTVNKKVLPFQQLMTRKR  528
              +FSRN E++++ YP+++  L+   K   KSF+LD E VA D    ++LPFQ L  RK+
Sbjct  42   K-LFSRNLENITRHYPEIVEALKEAFKPDEKSFILDGEIVAVDPETGEILPFQVLADRKK  100

Query  529  KDVKAEDV--KVKVCIFAFDLLFLNGEPTVKKTLRERRELLHKSFEVVEGEFQFAQHGDT  586
            K V  E++  KV VC+F FDLL+L+GE      LRERR+LL + F+ + G  Q A+   T
Sbjct  101  KKVDVEELAEKVPVCLFVFDLLYLDGEDLTDLPLRERRKLLEEIFKEIPGRIQLAESIVT  160

Query  587  NDLEEIQNLLDESVKASCEGLMVKMLDTEESGYEPSKRSRNWLKVK  632
             D+EE Q  L+E++    EGL+VK  D   S YEP KR +NWLK+K
Sbjct  161  KDVEEAQEFLEEAISEGLEGLVVKDPD---STYEPGKRGKNWLKIK  203


>CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus.  This region 
is found in many but not all ATP-dependent DNA ligase enzymes 
(EC:6.5.1.1). It is thought to be involved in DNA binding 
and in catalysis. In human DNA ligase I, and in Saccharomyces 
cerevisiae, this region was necessary for catalysis, and 
separated from the amino terminus by targeting elements. In 
vaccinia virus this region was not essential for catalysis, 
but deletion decreases the affinity for nicked DNA and decreased 
the rate of strand joining at a step subsequent to enzyme-adenylate 
formation.
Length=174

 Score = 190 bits (486),  Expect = 6e-57, Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 107/197 (54%), Gaps = 24/197 (12%)

Query  147  PYAALCKTFSLIE-MTTKRLIILAHCSLFLRQVLRLTPQDLLPTVQLMINKLAADYAGIE  205
            P++ L + F  IE  T+ RL   A  + F R V+   P+DL P ++L    L  DY G E
Sbjct  1    PFSLLAELFEKIEATTSSRLEKTAILANFFRSVIGAGPEDLYPALRL----LLPDYDGRE  56

Query  206  LGIGESFIMKAIGESTGRSLAVIKADQHEIGDLGLVAAKSRSNQPTMFKPKPLTVRGVHE  265
             GIGE  + KAI E+ G S   IK    + GDLG VA +  S + T+FKP PLT+  V+E
Sbjct  57   YGIGEKLLAKAIAEALGLSKDSIKDAYRKAGDLGEVAEEVLSKRSTLFKPSPLTIDEVNE  116

Query  266  GLIAIAKIQGQGSQDKKISAIKKLLSAADAATAGKGGKGVDITKDKGGASEAKFIVRFLE  325
             L  +A   G+GSQD+KI  +KKLL  A                      EAK+++R + 
Sbjct  117  LLDKLAAASGKGSQDEKIKILKKLLKRAT-------------------PEEAKYLIRIIL  157

Query  326  GKLRLGLAEKTVLVALA  342
            G LR+GL EKTVL ALA
Sbjct  158  GDLRIGLGEKTVLDALA  174


>CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C terminal 
region.  This region is found in many but not all ATP-dependent 
DNA ligase enzymes (EC:6.5.1.1). It is thought to constitute 
part of the catalytic core of ATP dependent DNA ligase.
Length=94

 Score = 109 bits (275),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 42/118 (36%), Positives = 56/118 (47%), Gaps = 24/118 (20%)

Query  657  RTSVYGAFLLAAYNSSTQTYETICNIGTGFSEALLEELYKELSPLTIDRPKPFYSHSNVP  716
            R   +G+ LL  Y+        +  +GTGF++A LEEL + L PL   +P PF      P
Sbjct  1    RRGGFGSLLLGVYD--DGRLVYVGKVGTGFTDADLEELRERLKPLERKKP-PF--AEPPP  55

Query  717  KDQPDVWFEPRLVWEVKTADLTLSPRYKAAADEFVGTAGGGKGVSLRFPRFIKSRDDK  774
            + +  VW EP LV EV+ A+ T S R                   LRFPRF   R+DK
Sbjct  56   EARGAVWVEPELVAEVEFAEWTRSGR-------------------LRFPRFKGLREDK  94



Lambda      K        H        a         alpha
   0.313    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1036068224


Query= TCONS_00017827

Length=539
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family      59.9    7e-11


>CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.  
Length=213

 Score = 59.9 bits (146),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 19/49 (39%), Positives = 27/49 (55%), Gaps = 0/49 (0%)

Query  488  WSTRWNPKAWADQGYVVVAPNPTGSTGFGQALTDAIQNNWGKHPLPTFF  536
             S  WN +  AD+GYVV   N  GS G+G+A  DA + + G++    F 
Sbjct  1    PSFSWNAQLLADRGYVVAIANGRGSGGYGEAFHDAGKGDLGQNEFDDFI  49



Lambda      K        H        a         alpha
   0.313    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 678301568


Query= TCONS_00017828

Length=962
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase do...  249     3e-77
CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus. This...  192     3e-57
CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C ...  109     4e-29


>CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain.  
This domain belongs to a more diverse superfamily, including 
pfam01331 and pfam01653.
Length=203

 Score = 249 bits (637),  Expect = 3e-77, Method: Composition-based stats.
 Identities = 102/226 (45%), Positives = 134/226 (59%), Gaps = 25/226 (11%)

Query  560  PMLAKPTKSITEVLNRFEGKNFTCEYKYDGERAQIHYVAPDVVHHYPGAKTTLQKDSKGL  619
            PMLAK  KSI E L +F G  F  EYKYDGERAQIH                  KD   +
Sbjct  1    PMLAKSFKSIEEALKKFGGA-FIAEYKYDGERAQIH------------------KDGDEV  41

Query  620  SAIFSRNSEDLSKKYPDVLAKLETWVKDGVKSFVLDCETVAWDTVNKKVLPFQQLMTRKR  679
              +FSRN E++++ YP+++  L+   K   KSF+LD E VA D    ++LPFQ L  RK+
Sbjct  42   K-LFSRNLENITRHYPEIVEALKEAFKPDEKSFILDGEIVAVDPETGEILPFQVLADRKK  100

Query  680  KDVKAEDV--KVKVCIFAFDLLFLNGEPTVKKTLRERRELLHKSFEVVEGEFQFAQHGDT  737
            K V  E++  KV VC+F FDLL+L+GE      LRERR+LL + F+ + G  Q A+   T
Sbjct  101  KKVDVEELAEKVPVCLFVFDLLYLDGEDLTDLPLRERRKLLEEIFKEIPGRIQLAESIVT  160

Query  738  NDLEEIQNLLDESVKASCEGLMVKMLDTEESGYEPSKRSRNWLKVK  783
             D+EE Q  L+E++    EGL+VK  D   S YEP KR +NWLK+K
Sbjct  161  KDVEEAQEFLEEAISEGLEGLVVKDPD---STYEPGKRGKNWLKIK  203


>CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus.  This region 
is found in many but not all ATP-dependent DNA ligase enzymes 
(EC:6.5.1.1). It is thought to be involved in DNA binding 
and in catalysis. In human DNA ligase I, and in Saccharomyces 
cerevisiae, this region was necessary for catalysis, and 
separated from the amino terminus by targeting elements. In 
vaccinia virus this region was not essential for catalysis, 
but deletion decreases the affinity for nicked DNA and decreased 
the rate of strand joining at a step subsequent to enzyme-adenylate 
formation.
Length=174

 Score = 192 bits (491),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 107/197 (54%), Gaps = 24/197 (12%)

Query  298  PYAALCKTFSLIE-MTTKRLIILAHCSLFLRQVLRLTPQDLLPTVQLMINKLAADYAGIE  356
            P++ L + F  IE  T+ RL   A  + F R V+   P+DL P ++L    L  DY G E
Sbjct  1    PFSLLAELFEKIEATTSSRLEKTAILANFFRSVIGAGPEDLYPALRL----LLPDYDGRE  56

Query  357  LGIGESFIMKAIGESTGRSLAVIKADQHEIGDLGLVAAKSRSNQPTMFKPKPLTVRGVHE  416
             GIGE  + KAI E+ G S   IK    + GDLG VA +  S + T+FKP PLT+  V+E
Sbjct  57   YGIGEKLLAKAIAEALGLSKDSIKDAYRKAGDLGEVAEEVLSKRSTLFKPSPLTIDEVNE  116

Query  417  GLIAIAKIQGQGSQDKKISAIKKLLSAADAATAGKGGKGVDITKDKGGASEAKFIVRFLE  476
             L  +A   G+GSQD+KI  +KKLL  A                      EAK+++R + 
Sbjct  117  LLDKLAAASGKGSQDEKIKILKKLLKRAT-------------------PEEAKYLIRIIL  157

Query  477  GKLRLGLAEKTVLVALA  493
            G LR+GL EKTVL ALA
Sbjct  158  GDLRIGLGEKTVLDALA  174


>CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C terminal 
region.  This region is found in many but not all ATP-dependent 
DNA ligase enzymes (EC:6.5.1.1). It is thought to constitute 
part of the catalytic core of ATP dependent DNA ligase.
Length=94

 Score = 109 bits (275),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 42/118 (36%), Positives = 56/118 (47%), Gaps = 24/118 (20%)

Query  808  RTSVYGAFLLAAYNSSTQTYETICNIGTGFSEALLEELYKELSPLTIDRPKPFYSHSNVP  867
            R   +G+ LL  Y+        +  +GTGF++A LEEL + L PL   +P PF      P
Sbjct  1    RRGGFGSLLLGVYD--DGRLVYVGKVGTGFTDADLEELRERLKPLERKKP-PF--AEPPP  55

Query  868  KDQPDVWFEPRLVWEVKTADLTLSPRYKAAADEFVGTAGGGKGVSLRFPRFIKSRDDK  925
            + +  VW EP LV EV+ A+ T S R                   LRFPRF   R+DK
Sbjct  56   EARGAVWVEPELVAEVEFAEWTRSGR-------------------LRFPRFKGLREDK  94



Lambda      K        H        a         alpha
   0.313    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1226148616


Query= TCONS_00017829

Length=952
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase do...  249     3e-77
CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus. This...  192     3e-57
CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C ...  109     4e-29


>CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain.  
This domain belongs to a more diverse superfamily, including 
pfam01331 and pfam01653.
Length=203

 Score = 249 bits (637),  Expect = 3e-77, Method: Composition-based stats.
 Identities = 102/226 (45%), Positives = 134/226 (59%), Gaps = 25/226 (11%)

Query  550  PMLAKPTKSITEVLNRFEGKNFTCEYKYDGERAQIHYVAPDVVHHYPGAKTTLQKDSKGL  609
            PMLAK  KSI E L +F G  F  EYKYDGERAQIH                  KD   +
Sbjct  1    PMLAKSFKSIEEALKKFGGA-FIAEYKYDGERAQIH------------------KDGDEV  41

Query  610  SAIFSRNSEDLSKKYPDVLAKLETWVKDGVKSFVLDCETVAWDTVNKKVLPFQQLMTRKR  669
              +FSRN E++++ YP+++  L+   K   KSF+LD E VA D    ++LPFQ L  RK+
Sbjct  42   K-LFSRNLENITRHYPEIVEALKEAFKPDEKSFILDGEIVAVDPETGEILPFQVLADRKK  100

Query  670  KDVKAEDV--KVKVCIFAFDLLFLNGEPTVKKTLRERRELLHKSFEVVEGEFQFAQHGDT  727
            K V  E++  KV VC+F FDLL+L+GE      LRERR+LL + F+ + G  Q A+   T
Sbjct  101  KKVDVEELAEKVPVCLFVFDLLYLDGEDLTDLPLRERRKLLEEIFKEIPGRIQLAESIVT  160

Query  728  NDLEEIQNLLDESVKASCEGLMVKMLDTEESGYEPSKRSRNWLKVK  773
             D+EE Q  L+E++    EGL+VK  D   S YEP KR +NWLK+K
Sbjct  161  KDVEEAQEFLEEAISEGLEGLVVKDPD---STYEPGKRGKNWLKIK  203


>CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus.  This region 
is found in many but not all ATP-dependent DNA ligase enzymes 
(EC:6.5.1.1). It is thought to be involved in DNA binding 
and in catalysis. In human DNA ligase I, and in Saccharomyces 
cerevisiae, this region was necessary for catalysis, and 
separated from the amino terminus by targeting elements. In 
vaccinia virus this region was not essential for catalysis, 
but deletion decreases the affinity for nicked DNA and decreased 
the rate of strand joining at a step subsequent to enzyme-adenylate 
formation.
Length=174

 Score = 192 bits (491),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 107/197 (54%), Gaps = 24/197 (12%)

Query  288  PYAALCKTFSLIE-MTTKRLIILAHCSLFLRQVLRLTPQDLLPTVQLMINKLAADYAGIE  346
            P++ L + F  IE  T+ RL   A  + F R V+   P+DL P ++L    L  DY G E
Sbjct  1    PFSLLAELFEKIEATTSSRLEKTAILANFFRSVIGAGPEDLYPALRL----LLPDYDGRE  56

Query  347  LGIGESFIMKAIGESTGRSLAVIKADQHEIGDLGLVAAKSRSNQPTMFKPKPLTVRGVHE  406
             GIGE  + KAI E+ G S   IK    + GDLG VA +  S + T+FKP PLT+  V+E
Sbjct  57   YGIGEKLLAKAIAEALGLSKDSIKDAYRKAGDLGEVAEEVLSKRSTLFKPSPLTIDEVNE  116

Query  407  GLIAIAKIQGQGSQDKKISAIKKLLSAADAATAGKGGKGVDITKDKGGASEAKFIVRFLE  466
             L  +A   G+GSQD+KI  +KKLL  A                      EAK+++R + 
Sbjct  117  LLDKLAAASGKGSQDEKIKILKKLLKRAT-------------------PEEAKYLIRIIL  157

Query  467  GKLRLGLAEKTVLVALA  483
            G LR+GL EKTVL ALA
Sbjct  158  GDLRIGLGEKTVLDALA  174


>CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C terminal 
region.  This region is found in many but not all ATP-dependent 
DNA ligase enzymes (EC:6.5.1.1). It is thought to constitute 
part of the catalytic core of ATP dependent DNA ligase.
Length=94

 Score = 109 bits (275),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 42/118 (36%), Positives = 56/118 (47%), Gaps = 24/118 (20%)

Query  798  RTSVYGAFLLAAYNSSTQTYETICNIGTGFSEALLEELYKELSPLTIDRPKPFYSHSNVP  857
            R   +G+ LL  Y+        +  +GTGF++A LEEL + L PL   +P PF      P
Sbjct  1    RRGGFGSLLLGVYD--DGRLVYVGKVGTGFTDADLEELRERLKPLERKKP-PF--AEPPP  55

Query  858  KDQPDVWFEPRLVWEVKTADLTLSPRYKAAADEFVGTAGGGKGVSLRFPRFIKSRDDK  915
            + +  VW EP LV EV+ A+ T S R                   LRFPRF   R+DK
Sbjct  56   EARGAVWVEPELVAEVEFAEWTRSGR-------------------LRFPRFKGLREDK  94



Lambda      K        H        a         alpha
   0.313    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1211989856


Query= TCONS_00011661

Length=944
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase do...  258     8e-81
CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus. This...  192     5e-57
CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C ...  109     4e-29


>CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain.  
This domain belongs to a more diverse superfamily, including 
pfam01331 and pfam01653.
Length=203

 Score = 258 bits (661),  Expect = 8e-81, Method: Composition-based stats.
 Identities = 101/208 (49%), Positives = 133/208 (64%), Gaps = 7/208 (3%)

Query  560  PMLAKPTKSITEVLNRFEGKNFTCEYKYDGERAQIHYDSKGLSAIFSRNSEDLSKKYPDV  619
            PMLAK  KSI E L +F G  F  EYKYDGERAQIH D   +  +FSRN E++++ YP++
Sbjct  1    PMLAKSFKSIEEALKKFGGA-FIAEYKYDGERAQIHKDGDEVK-LFSRNLENITRHYPEI  58

Query  620  LAKLETWVKDGVKSFVLDCETVAWDTVNKKVLPFQQLMTRKRKDVKAEDV--KVKVCIFA  677
            +  L+   K   KSF+LD E VA D    ++LPFQ L  RK+K V  E++  KV VC+F 
Sbjct  59   VEALKEAFKPDEKSFILDGEIVAVDPETGEILPFQVLADRKKKKVDVEELAEKVPVCLFV  118

Query  678  FDLLFLNGEPTVKKTLRERRELLHKSFEVVEGEFQFAQHGDTNDLEEIQNLLDESVKASC  737
            FDLL+L+GE      LRERR+LL + F+ + G  Q A+   T D+EE Q  L+E++    
Sbjct  119  FDLLYLDGEDLTDLPLRERRKLLEEIFKEIPGRIQLAESIVTKDVEEAQEFLEEAISEGL  178

Query  738  EGLMVKMLDTEESGYEPSKRSRNWLKVK  765
            EGL+VK  D   S YEP KR +NWLK+K
Sbjct  179  EGLVVKDPD---STYEPGKRGKNWLKIK  203


>CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus.  This region 
is found in many but not all ATP-dependent DNA ligase enzymes 
(EC:6.5.1.1). It is thought to be involved in DNA binding 
and in catalysis. In human DNA ligase I, and in Saccharomyces 
cerevisiae, this region was necessary for catalysis, and 
separated from the amino terminus by targeting elements. In 
vaccinia virus this region was not essential for catalysis, 
but deletion decreases the affinity for nicked DNA and decreased 
the rate of strand joining at a step subsequent to enzyme-adenylate 
formation.
Length=174

 Score = 192 bits (489),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 107/197 (54%), Gaps = 24/197 (12%)

Query  298  PYAALCKTFSLIE-MTTKRLIILAHCSLFLRQVLRLTPQDLLPTVQLMINKLAADYAGIE  356
            P++ L + F  IE  T+ RL   A  + F R V+   P+DL P ++L    L  DY G E
Sbjct  1    PFSLLAELFEKIEATTSSRLEKTAILANFFRSVIGAGPEDLYPALRL----LLPDYDGRE  56

Query  357  LGIGESFIMKAIGESTGRSLAVIKADQHEIGDLGLVAAKSRSNQPTMFKPKPLTVRGVHE  416
             GIGE  + KAI E+ G S   IK    + GDLG VA +  S + T+FKP PLT+  V+E
Sbjct  57   YGIGEKLLAKAIAEALGLSKDSIKDAYRKAGDLGEVAEEVLSKRSTLFKPSPLTIDEVNE  116

Query  417  GLIAIAKIQGQGSQDKKISAIKKLLSAADAATAGKGGKGVDITKDKGGASEAKFIVRFLE  476
             L  +A   G+GSQD+KI  +KKLL  A                      EAK+++R + 
Sbjct  117  LLDKLAAASGKGSQDEKIKILKKLLKRAT-------------------PEEAKYLIRIIL  157

Query  477  GKLRLGLAEKTVLVALA  493
            G LR+GL EKTVL ALA
Sbjct  158  GDLRIGLGEKTVLDALA  174


>CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C terminal 
region.  This region is found in many but not all ATP-dependent 
DNA ligase enzymes (EC:6.5.1.1). It is thought to constitute 
part of the catalytic core of ATP dependent DNA ligase.
Length=94

 Score = 109 bits (275),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 42/118 (36%), Positives = 56/118 (47%), Gaps = 24/118 (20%)

Query  790  RTSVYGAFLLAAYNSSTQTYETICNIGTGFSEALLEELYKELSPLTIDRPKPFYSHSNVP  849
            R   +G+ LL  Y+        +  +GTGF++A LEEL + L PL   +P PF      P
Sbjct  1    RRGGFGSLLLGVYD--DGRLVYVGKVGTGFTDADLEELRERLKPLERKKP-PF--AEPPP  55

Query  850  KDQPDVWFEPRLVWEVKTADLTLSPRYKAAADEFVGTAGGGKGVSLRFPRFIKSRDDK  907
            + +  VW EP LV EV+ A+ T S R                   LRFPRF   R+DK
Sbjct  56   EARGAVWVEPELVAEVEFAEWTRSGR-------------------LRFPRFKGLREDK  94



Lambda      K        H        a         alpha
   0.313    0.130    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1200662848


Query= TCONS_00011662

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00017830

Length=632
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family      134     1e-36


>CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.  
Length=213

 Score = 134 bits (340),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 47/139 (34%), Positives = 63/139 (45%), Gaps = 3/139 (2%)

Query  488  WSTRWNPKAWADQGYVVVAPNPTGSTGFGQALTDAIQNNWGGAPYDDLVKCWEYVHENLD  547
             S  WN +  AD+GYVV   N  GS G+G+A  DA + + G   +DD +   EY+ E   
Sbjct  1    PSFSWNAQLLADRGYVVAIANGRGSGGYGEAFHDAGKGDLGQNEFDDFIAAAEYLIEQ-G  59

Query  548  YVDTDHGVAAGASYGGFMINWIQGSPLGRKFKALVSHDGTFVADAKVSTEELWFMQR-EF  606
            Y D D     G SYGG++            FKA V+H       A +S   L F +R   
Sbjct  60   YTDPDRLAIWGGSYGGYLTGAALN-QRPDLFKAAVAHVPVVDWLAYMSDTSLPFTERYME  118

Query  607  NGTFWDARDNYRRWDPSAP  625
             G  WD  + Y    P +P
Sbjct  119  WGNPWDNEEGYDYLSPYSP  137



Lambda      K        H        a         alpha
   0.314    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 794911810


Query= TCONS_00011663

Length=701
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus. This...  192     5e-58
CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase do...  157     1e-44


>CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus.  This region 
is found in many but not all ATP-dependent DNA ligase enzymes 
(EC:6.5.1.1). It is thought to be involved in DNA binding 
and in catalysis. In human DNA ligase I, and in Saccharomyces 
cerevisiae, this region was necessary for catalysis, and 
separated from the amino terminus by targeting elements. In 
vaccinia virus this region was not essential for catalysis, 
but deletion decreases the affinity for nicked DNA and decreased 
the rate of strand joining at a step subsequent to enzyme-adenylate 
formation.
Length=174

 Score = 192 bits (490),  Expect = 5e-58, Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 107/197 (54%), Gaps = 24/197 (12%)

Query  288  PYAALCKTFSLIE-MTTKRLIILAHCSLFLRQVLRLTPQDLLPTVQLMINKLAADYAGIE  346
            P++ L + F  IE  T+ RL   A  + F R V+   P+DL P ++L    L  DY G E
Sbjct  1    PFSLLAELFEKIEATTSSRLEKTAILANFFRSVIGAGPEDLYPALRL----LLPDYDGRE  56

Query  347  LGIGESFIMKAIGESTGRSLAVIKADQHEIGDLGLVAAKSRSNQPTMFKPKPLTVRGVHE  406
             GIGE  + KAI E+ G S   IK    + GDLG VA +  S + T+FKP PLT+  V+E
Sbjct  57   YGIGEKLLAKAIAEALGLSKDSIKDAYRKAGDLGEVAEEVLSKRSTLFKPSPLTIDEVNE  116

Query  407  GLIAIAKIQGQGSQDKKISAIKKLLSAADAATAGKGGKGVDITKDKGGASEAKFIVRFLE  466
             L  +A   G+GSQD+KI  +KKLL  A                      EAK+++R + 
Sbjct  117  LLDKLAAASGKGSQDEKIKILKKLLKRAT-------------------PEEAKYLIRIIL  157

Query  467  GKLRLGLAEKTVLVALA  483
            G LR+GL EKTVL ALA
Sbjct  158  GDLRIGLGEKTVLDALA  174


>CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain.  
This domain belongs to a more diverse superfamily, including 
pfam01331 and pfam01653.
Length=203

 Score = 157 bits (398),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 67/147 (46%), Positives = 87/147 (59%), Gaps = 22/147 (15%)

Query  550  PMLAKPTKSITEVLNRFEGKNFTCEYKYDGERAQIHYVAPDVVHHYPGAKTTLQKDSKGL  609
            PMLAK  KSI E L +F G  F  EYKYDGERAQIH                  KD   +
Sbjct  1    PMLAKSFKSIEEALKKFGGA-FIAEYKYDGERAQIH------------------KDGDEV  41

Query  610  SAIFSRNSEDLSKKYPDVLAKLETWVKDGVKSFVLDCETVAWDTVNKKVLPFQQLMTRKR  669
              +FSRN E++++ YP+++  L+   K   KSF+LD E VA D    ++LPFQ L  RK+
Sbjct  42   K-LFSRNLENITRHYPEIVEALKEAFKPDEKSFILDGEIVAVDPETGEILPFQVLADRKK  100

Query  670  KDVKAEDV--KVKVCIFAFDLLFLNGE  694
            K V  E++  KV VC+F FDLL+L+GE
Sbjct  101  KKVDVEELAEKVPVCLFVFDLLYLDGE  127



Lambda      K        H        a         alpha
   0.312    0.129    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 896672320


Query= TCONS_00017831

Length=721
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family      211     1e-64


>CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.  
Length=213

 Score = 211 bits (540),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 72/215 (33%), Positives = 102/215 (47%), Gaps = 3/215 (1%)

Query  488  WSTRWNPKAWADQGYVVVAPNPTGSTGFGQALTDAIQNNWGGAPYDDLVKCWEYVHENLD  547
             S  WN +  AD+GYVV   N  GS G+G+A  DA + + G   +DD +   EY+ E   
Sbjct  1    PSFSWNAQLLADRGYVVAIANGRGSGGYGEAFHDAGKGDLGQNEFDDFIAAAEYLIEQ-G  59

Query  548  YVDTDHGVAAGASYGGFMINWIQGSPLGRKFKALVSHDGTFVADAKVSTEELWFMQR-EF  606
            Y D D     G SYGG++            FKA V+H       A +S   L F +R   
Sbjct  60   YTDPDRLAIWGGSYGGYLTGAALN-QRPDLFKAAVAHVPVVDWLAYMSDTSLPFTERYME  118

Query  607  NGTFWDARDNYRRWDPSAPERILQFATPMLVIHSDKDYRLPVAEGLSLFNVLQERGVPSR  666
             G  WD  + Y    P +P   ++   P+L+IH   D R+P  + L L   LQ +GVP  
Sbjct  119  WGNPWDNEEGYDYLSPYSPADNVKVYPPLLLIHGLLDDRVPPWQSLKLVAALQRKGVPFL  178

Query  667  FLNFPDENHWVVNPENSLVWHQQALGWINKYSGVE  701
             L FPDE H +  P N +  + + L ++ +Y G  
Sbjct  179  LLIFPDEGHGIGKPRNKVEEYARELAFLLEYLGGT  213



Lambda      K        H        a         alpha
   0.315    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 912380304


Query= TCONS_00011664

Length=909
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase do...  257     9e-81
CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus. This...  193     2e-57
CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C ...  109     4e-29


>CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain.  
This domain belongs to a more diverse superfamily, including 
pfam01331 and pfam01653.
Length=203

 Score = 257 bits (660),  Expect = 9e-81, Method: Composition-based stats.
 Identities = 101/208 (49%), Positives = 133/208 (64%), Gaps = 7/208 (3%)

Query  525  PMLAKPTKSITEVLNRFEGKNFTCEYKYDGERAQIHYDSKGLSAIFSRNSEDLSKKYPDV  584
            PMLAK  KSI E L +F G  F  EYKYDGERAQIH D   +  +FSRN E++++ YP++
Sbjct  1    PMLAKSFKSIEEALKKFGGA-FIAEYKYDGERAQIHKDGDEVK-LFSRNLENITRHYPEI  58

Query  585  LAKLETWVKDGVKSFVLDCETVAWDTVNKKVLPFQQLMTRKRKDVKAEDV--KVKVCIFA  642
            +  L+   K   KSF+LD E VA D    ++LPFQ L  RK+K V  E++  KV VC+F 
Sbjct  59   VEALKEAFKPDEKSFILDGEIVAVDPETGEILPFQVLADRKKKKVDVEELAEKVPVCLFV  118

Query  643  FDLLFLNGEPTVKKTLRERRELLHKSFEVVEGEFQFAQHGDTNDLEEIQNLLDESVKASC  702
            FDLL+L+GE      LRERR+LL + F+ + G  Q A+   T D+EE Q  L+E++    
Sbjct  119  FDLLYLDGEDLTDLPLRERRKLLEEIFKEIPGRIQLAESIVTKDVEEAQEFLEEAISEGL  178

Query  703  EGLMVKMLDTEESGYEPSKRSRNWLKVK  730
            EGL+VK  D   S YEP KR +NWLK+K
Sbjct  179  EGLVVKDPD---STYEPGKRGKNWLKIK  203


>CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus.  This region 
is found in many but not all ATP-dependent DNA ligase enzymes 
(EC:6.5.1.1). It is thought to be involved in DNA binding 
and in catalysis. In human DNA ligase I, and in Saccharomyces 
cerevisiae, this region was necessary for catalysis, and 
separated from the amino terminus by targeting elements. In 
vaccinia virus this region was not essential for catalysis, 
but deletion decreases the affinity for nicked DNA and decreased 
the rate of strand joining at a step subsequent to enzyme-adenylate 
formation.
Length=174

 Score = 193 bits (492),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 80/178 (45%), Positives = 106/178 (60%), Gaps = 11/178 (6%)

Query  288  PYAALCKTFSLIE-MTTKRLIILAHCSLFLRQVLRLTPQDLLPTVQLMINKLAADYAGIE  346
            P++ L + F  IE  T+ RL   A  + F R V+   P+DL P ++L    L  DY G E
Sbjct  1    PFSLLAELFEKIEATTSSRLEKTAILANFFRSVIGAGPEDLYPALRL----LLPDYDGRE  56

Query  347  LGIGESFIMKAIGESTGRSLAVIKADQHEIGDLGLVAAKSRSNQPTMFKPKPLTVRGVHE  406
             GIGE  + KAI E+ G S   IK    + GDLG VA +  S + T+FKP PLT+  V+E
Sbjct  57   YGIGEKLLAKAIAEALGLSKDSIKDAYRKAGDLGEVAEEVLSKRSTLFKPSPLTIDEVNE  116

Query  407  GLIAIAKIQGQGSQDKKISAIKKLL------EAKFIVRFLEGKLRLGLAEKTVLVALA  458
             L  +A   G+GSQD+KI  +KKLL      EAK+++R + G LR+GL EKTVL ALA
Sbjct  117  LLDKLAAASGKGSQDEKIKILKKLLKRATPEEAKYLIRIILGDLRIGLGEKTVLDALA  174


>CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C terminal 
region.  This region is found in many but not all ATP-dependent 
DNA ligase enzymes (EC:6.5.1.1). It is thought to constitute 
part of the catalytic core of ATP dependent DNA ligase.
Length=94

 Score = 109 bits (275),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 42/118 (36%), Positives = 56/118 (47%), Gaps = 24/118 (20%)

Query  755  RTSVYGAFLLAAYNSSTQTYETICNIGTGFSEALLEELYKELSPLTIDRPKPFYSHSNVP  814
            R   +G+ LL  Y+        +  +GTGF++A LEEL + L PL   +P PF      P
Sbjct  1    RRGGFGSLLLGVYD--DGRLVYVGKVGTGFTDADLEELRERLKPLERKKP-PF--AEPPP  55

Query  815  KDQPDVWFEPRLVWEVKTADLTLSPRYKAAADEFVGTAGGGKGVSLRFPRFIKSRDDK  872
            + +  VW EP LV EV+ A+ T S R                   LRFPRF   R+DK
Sbjct  56   EARGAVWVEPELVAEVEFAEWTRSGR-------------------LRFPRFKGLREDK  94



Lambda      K        H        a         alpha
   0.313    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1168508396


Query= TCONS_00017832

Length=811
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase do...  246     5e-77
CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus. This...  190     6e-57
CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C ...  109     4e-29


>CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain.  
This domain belongs to a more diverse superfamily, including 
pfam01331 and pfam01653.
Length=203

 Score = 246 bits (629),  Expect = 5e-77, Method: Composition-based stats.
 Identities = 102/226 (45%), Positives = 134/226 (59%), Gaps = 25/226 (11%)

Query  409  PMLAKPTKSITEVLNRFEGKNFTCEYKYDGERAQIHYVAPDVVHHYPGAKTTLQKDSKGL  468
            PMLAK  KSI E L +F G  F  EYKYDGERAQIH                  KD   +
Sbjct  1    PMLAKSFKSIEEALKKFGGA-FIAEYKYDGERAQIH------------------KDGDEV  41

Query  469  SAIFSRNSEDLSKKYPDVLAKLETWVKDGVKSFVLDCETVAWDTVNKKVLPFQQLMTRKR  528
              +FSRN E++++ YP+++  L+   K   KSF+LD E VA D    ++LPFQ L  RK+
Sbjct  42   K-LFSRNLENITRHYPEIVEALKEAFKPDEKSFILDGEIVAVDPETGEILPFQVLADRKK  100

Query  529  KDVKAEDV--KVKVCIFAFDLLFLNGEPTVKKTLRERRELLHKSFEVVEGEFQFAQHGDT  586
            K V  E++  KV VC+F FDLL+L+GE      LRERR+LL + F+ + G  Q A+   T
Sbjct  101  KKVDVEELAEKVPVCLFVFDLLYLDGEDLTDLPLRERRKLLEEIFKEIPGRIQLAESIVT  160

Query  587  NDLEEIQNLLDESVKASCEGLMVKMLDTEESGYEPSKRSRNWLKVK  632
             D+EE Q  L+E++    EGL+VK  D   S YEP KR +NWLK+K
Sbjct  161  KDVEEAQEFLEEAISEGLEGLVVKDPD---STYEPGKRGKNWLKIK  203


>CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus.  This region 
is found in many but not all ATP-dependent DNA ligase enzymes 
(EC:6.5.1.1). It is thought to be involved in DNA binding 
and in catalysis. In human DNA ligase I, and in Saccharomyces 
cerevisiae, this region was necessary for catalysis, and 
separated from the amino terminus by targeting elements. In 
vaccinia virus this region was not essential for catalysis, 
but deletion decreases the affinity for nicked DNA and decreased 
the rate of strand joining at a step subsequent to enzyme-adenylate 
formation.
Length=174

 Score = 190 bits (486),  Expect = 6e-57, Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 107/197 (54%), Gaps = 24/197 (12%)

Query  147  PYAALCKTFSLIE-MTTKRLIILAHCSLFLRQVLRLTPQDLLPTVQLMINKLAADYAGIE  205
            P++ L + F  IE  T+ RL   A  + F R V+   P+DL P ++L    L  DY G E
Sbjct  1    PFSLLAELFEKIEATTSSRLEKTAILANFFRSVIGAGPEDLYPALRL----LLPDYDGRE  56

Query  206  LGIGESFIMKAIGESTGRSLAVIKADQHEIGDLGLVAAKSRSNQPTMFKPKPLTVRGVHE  265
             GIGE  + KAI E+ G S   IK    + GDLG VA +  S + T+FKP PLT+  V+E
Sbjct  57   YGIGEKLLAKAIAEALGLSKDSIKDAYRKAGDLGEVAEEVLSKRSTLFKPSPLTIDEVNE  116

Query  266  GLIAIAKIQGQGSQDKKISAIKKLLSAADAATAGKGGKGVDITKDKGGASEAKFIVRFLE  325
             L  +A   G+GSQD+KI  +KKLL  A                      EAK+++R + 
Sbjct  117  LLDKLAAASGKGSQDEKIKILKKLLKRAT-------------------PEEAKYLIRIIL  157

Query  326  GKLRLGLAEKTVLVALA  342
            G LR+GL EKTVL ALA
Sbjct  158  GDLRIGLGEKTVLDALA  174


>CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C terminal 
region.  This region is found in many but not all ATP-dependent 
DNA ligase enzymes (EC:6.5.1.1). It is thought to constitute 
part of the catalytic core of ATP dependent DNA ligase.
Length=94

 Score = 109 bits (275),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 42/118 (36%), Positives = 56/118 (47%), Gaps = 24/118 (20%)

Query  657  RTSVYGAFLLAAYNSSTQTYETICNIGTGFSEALLEELYKELSPLTIDRPKPFYSHSNVP  716
            R   +G+ LL  Y+        +  +GTGF++A LEEL + L PL   +P PF      P
Sbjct  1    RRGGFGSLLLGVYD--DGRLVYVGKVGTGFTDADLEELRERLKPLERKKP-PF--AEPPP  55

Query  717  KDQPDVWFEPRLVWEVKTADLTLSPRYKAAADEFVGTAGGGKGVSLRFPRFIKSRDDK  774
            + +  VW EP LV EV+ A+ T S R                   LRFPRF   R+DK
Sbjct  56   EARGAVWVEPELVAEVEFAEWTRSGR-------------------LRFPRFKGLREDK  94



Lambda      K        H        a         alpha
   0.313    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1043343984


Query= TCONS_00011665

Length=792
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase do...  246     3e-77
CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus. This...  190     5e-57
CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C ...  109     3e-29


>CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain.  
This domain belongs to a more diverse superfamily, including 
pfam01331 and pfam01653.
Length=203

 Score = 246 bits (630),  Expect = 3e-77, Method: Composition-based stats.
 Identities = 102/226 (45%), Positives = 134/226 (59%), Gaps = 25/226 (11%)

Query  409  PMLAKPTKSITEVLNRFEGKNFTCEYKYDGERAQIHYVAPDVVHHYPGAKTTLQKDSKGL  468
            PMLAK  KSI E L +F G  F  EYKYDGERAQIH                  KD   +
Sbjct  1    PMLAKSFKSIEEALKKFGGA-FIAEYKYDGERAQIH------------------KDGDEV  41

Query  469  SAIFSRNSEDLSKKYPDVLAKLETWVKDGVKSFVLDCETVAWDTVNKKVLPFQQLMTRKR  528
              +FSRN E++++ YP+++  L+   K   KSF+LD E VA D    ++LPFQ L  RK+
Sbjct  42   K-LFSRNLENITRHYPEIVEALKEAFKPDEKSFILDGEIVAVDPETGEILPFQVLADRKK  100

Query  529  KDVKAEDV--KVKVCIFAFDLLFLNGEPTVKKTLRERRELLHKSFEVVEGEFQFAQHGDT  586
            K V  E++  KV VC+F FDLL+L+GE      LRERR+LL + F+ + G  Q A+   T
Sbjct  101  KKVDVEELAEKVPVCLFVFDLLYLDGEDLTDLPLRERRKLLEEIFKEIPGRIQLAESIVT  160

Query  587  NDLEEIQNLLDESVKASCEGLMVKMLDTEESGYEPSKRSRNWLKVK  632
             D+EE Q  L+E++    EGL+VK  D   S YEP KR +NWLK+K
Sbjct  161  KDVEEAQEFLEEAISEGLEGLVVKDPD---STYEPGKRGKNWLKIK  203


>CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus.  This region 
is found in many but not all ATP-dependent DNA ligase enzymes 
(EC:6.5.1.1). It is thought to be involved in DNA binding 
and in catalysis. In human DNA ligase I, and in Saccharomyces 
cerevisiae, this region was necessary for catalysis, and 
separated from the amino terminus by targeting elements. In 
vaccinia virus this region was not essential for catalysis, 
but deletion decreases the affinity for nicked DNA and decreased 
the rate of strand joining at a step subsequent to enzyme-adenylate 
formation.
Length=174

 Score = 190 bits (486),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 107/197 (54%), Gaps = 24/197 (12%)

Query  147  PYAALCKTFSLIE-MTTKRLIILAHCSLFLRQVLRLTPQDLLPTVQLMINKLAADYAGIE  205
            P++ L + F  IE  T+ RL   A  + F R V+   P+DL P ++L    L  DY G E
Sbjct  1    PFSLLAELFEKIEATTSSRLEKTAILANFFRSVIGAGPEDLYPALRL----LLPDYDGRE  56

Query  206  LGIGESFIMKAIGESTGRSLAVIKADQHEIGDLGLVAAKSRSNQPTMFKPKPLTVRGVHE  265
             GIGE  + KAI E+ G S   IK    + GDLG VA +  S + T+FKP PLT+  V+E
Sbjct  57   YGIGEKLLAKAIAEALGLSKDSIKDAYRKAGDLGEVAEEVLSKRSTLFKPSPLTIDEVNE  116

Query  266  GLIAIAKIQGQGSQDKKISAIKKLLSAADAATAGKGGKGVDITKDKGGASEAKFIVRFLE  325
             L  +A   G+GSQD+KI  +KKLL  A                      EAK+++R + 
Sbjct  117  LLDKLAAASGKGSQDEKIKILKKLLKRAT-------------------PEEAKYLIRIIL  157

Query  326  GKLRLGLAEKTVLVALA  342
            G LR+GL EKTVL ALA
Sbjct  158  GDLRIGLGEKTVLDALA  174


>CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C terminal 
region.  This region is found in many but not all ATP-dependent 
DNA ligase enzymes (EC:6.5.1.1). It is thought to constitute 
part of the catalytic core of ATP dependent DNA ligase.
Length=94

 Score = 109 bits (275),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 42/118 (36%), Positives = 56/118 (47%), Gaps = 24/118 (20%)

Query  657  RTSVYGAFLLAAYNSSTQTYETICNIGTGFSEALLEELYKELSPLTIDRPKPFYSHSNVP  716
            R   +G+ LL  Y+        +  +GTGF++A LEEL + L PL   +P PF      P
Sbjct  1    RRGGFGSLLLGVYD--DGRLVYVGKVGTGFTDADLEELRERLKPLERKKP-PF--AEPPP  55

Query  717  KDQPDVWFEPRLVWEVKTADLTLSPRYKAAADEFVGTAGGGKGVSLRFPRFIKSRDDK  774
            + +  VW EP LV EV+ A+ T S R                   LRFPRF   R+DK
Sbjct  56   EARGAVWVEPELVAEVEFAEWTRSGR-------------------LRFPRFKGLREDK  94



Lambda      K        H        a         alpha
   0.313    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1015696096


Query= TCONS_00011666

Length=721
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family      211     1e-64


>CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.  
Length=213

 Score = 211 bits (540),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 72/215 (33%), Positives = 102/215 (47%), Gaps = 3/215 (1%)

Query  488  WSTRWNPKAWADQGYVVVAPNPTGSTGFGQALTDAIQNNWGGAPYDDLVKCWEYVHENLD  547
             S  WN +  AD+GYVV   N  GS G+G+A  DA + + G   +DD +   EY+ E   
Sbjct  1    PSFSWNAQLLADRGYVVAIANGRGSGGYGEAFHDAGKGDLGQNEFDDFIAAAEYLIEQ-G  59

Query  548  YVDTDHGVAAGASYGGFMINWIQGSPLGRKFKALVSHDGTFVADAKVSTEELWFMQR-EF  606
            Y D D     G SYGG++            FKA V+H       A +S   L F +R   
Sbjct  60   YTDPDRLAIWGGSYGGYLTGAALN-QRPDLFKAAVAHVPVVDWLAYMSDTSLPFTERYME  118

Query  607  NGTFWDARDNYRRWDPSAPERILQFATPMLVIHSDKDYRLPVAEGLSLFNVLQERGVPSR  666
             G  WD  + Y    P +P   ++   P+L+IH   D R+P  + L L   LQ +GVP  
Sbjct  119  WGNPWDNEEGYDYLSPYSPADNVKVYPPLLLIHGLLDDRVPPWQSLKLVAALQRKGVPFL  178

Query  667  FLNFPDENHWVVNPENSLVWHQQALGWINKYSGVE  701
             L FPDE H +  P N +  + + L ++ +Y G  
Sbjct  179  LLIFPDEGHGIGKPRNKVEEYARELAFLLEYLGGT  213



Lambda      K        H        a         alpha
   0.315    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0881    0.140     1.90     42.6     43.6 

Effective search space used: 912380304


Query= TCONS_00017833

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family      208     2e-66


>CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.  
Length=213

 Score = 208 bits (532),  Expect = 2e-66, Method: Composition-based stats.
 Identities = 72/215 (33%), Positives = 102/215 (47%), Gaps = 3/215 (1%)

Query  182  WSTRWNPKAWADQGYVVVAPNPTGSTGFGQALTDAIQNNWGGAPYDDLVKCWEYVHENLD  241
             S  WN +  AD+GYVV   N  GS G+G+A  DA + + G   +DD +   EY+ E   
Sbjct  1    PSFSWNAQLLADRGYVVAIANGRGSGGYGEAFHDAGKGDLGQNEFDDFIAAAEYLIEQ-G  59

Query  242  YVDTDHGVAAGASYGGFMINWIQGSPLGRKFKALVSHDGTFVADAKVSTEELWFMQR-EF  300
            Y D D     G SYGG++            FKA V+H       A +S   L F +R   
Sbjct  60   YTDPDRLAIWGGSYGGYLTGAALN-QRPDLFKAAVAHVPVVDWLAYMSDTSLPFTERYME  118

Query  301  NGTFWDARDNYRRWDPSAPERILQFATPMLVIHSDKDYRLPVAEGLSLFNVLQERGVPSR  360
             G  WD  + Y    P +P   ++   P+L+IH   D R+P  + L L   LQ +GVP  
Sbjct  119  WGNPWDNEEGYDYLSPYSPADNVKVYPPLLLIHGLLDDRVPPWQSLKLVAALQRKGVPFL  178

Query  361  FLNFPDENHWVVNPENSLVWHQQALGWINKYSGVE  395
             L FPDE H +  P N +  + + L ++ +Y G  
Sbjct  179  LLIFPDEGHGIGKPRNKVEEYARELAFLLEYLGGT  213



Lambda      K        H        a         alpha
   0.316    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00011667

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459830 pfam00493, MCM, MCM2/3/5 family                            424     8e-149
CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain. This entry rep...  131     1e-37 
CDD:465381 pfam17207, MCM_OB, MCM OB domain. This family contains...  111     7e-30 


>CDD:459830 pfam00493, MCM, MCM2/3/5 family.  
Length=224

 Score = 424 bits (1093),  Expect = 8e-149, Method: Composition-based stats.
 Identities = 149/226 (66%), Positives = 182/226 (81%), Gaps = 2/226 (1%)

Query  122  EEEKIKRTATRPDLYELLSRSLAPSIYEMDDVKKGILLQLFGGTNKTFQKGGNPRYRGDI  181
            +EE+IK  A RPD+Y+ L+ S+APSIY  +DVKK ILLQLFGG  K    G   R RGDI
Sbjct  1    DEEEIKELAKRPDIYDKLADSIAPSIYGHEDVKKAILLQLFGGVKKILPDGT--RLRGDI  58

Query  182  NILLCGDPSTSKSQLLRYVHKIAPRGVYTSGKGSSAVGLTAYVTRDPETRQMVLESGALV  241
            N+LL GDP T+KSQLL+YV KIAPR VYTSGKGSSA GLTA V RDP T + VLE+GALV
Sbjct  59   NVLLVGDPGTAKSQLLKYVEKIAPRAVYTSGKGSSAAGLTAAVVRDPVTGEFVLEAGALV  118

Query  242  LSDGGICCIDEFDKMNESTRSVLHEVMEQQTVSIAKAGIITTLNARTSILASANPIGSRY  301
            L+DGG+CCIDEFDKMN+  R  LHE MEQQT+SIAKAGI+ TLNAR SILA+ANPI  RY
Sbjct  119  LADGGVCCIDEFDKMNDEDRVALHEAMEQQTISIAKAGIVATLNARCSILAAANPIFGRY  178

Query  302  NPNLPVPQNIDLPPTLLSRFDLVYLVLDRVDEQEDRRLAKHLVNMY  347
            +P   + +NI+LPP LLSRFDL++++LD+ DE++D RLAKH+V+++
Sbjct  179  DPKKSIAENINLPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH  224


>CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain.  This entry represents 
the AAA-lid domain found in MCM proteins.
Length=86

 Score = 131 bits (333),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 47/89 (53%), Positives = 60/89 (67%), Gaps = 3/89 (3%)

Query  363  EFLTAYITYAKTKVHPVLTPAAGKALSDAYVNMRKLGDDIRSSDRRITATTRQLESMIRL  422
            E L  YI YA+ K+ P L+  A + L DAYV +RK      SS   I  T RQLES+IRL
Sbjct  1    ELLRKYIAYAREKIKPKLSEEAREKLVDAYVELRKESTGSGSS---IPITVRQLESLIRL  57

Query  423  SEAHARMRLSPEVTADDVEEAVRLIRSAI  451
            SEAHA+MRLS  VT +DVEEA+RL++ ++
Sbjct  58   SEAHAKMRLSEIVTEEDVEEAIRLLKESL  86


>CDD:465381 pfam17207, MCM_OB, MCM OB domain.  This family contains an OB-fold 
found within MCM proteins. This domain contains an insertion 
at the zinc binding motif.
Length=126

 Score = 111 bits (281),  Expect = 7e-30, Method: Composition-based stats.
 Identities = 29/62 (47%), Positives = 42/62 (68%), Gaps = 0/62 (0%)

Query  1    MQLIHNRCVFADKQVIKLQETPDSIPDGQTPHSVSLCVYDELVDVCKAGDRVEVTGIFRC  60
             +L+H +  F D Q IK+QE+P+ +P G+ P S+ + + D+LVD  K GDRV VTGI+R 
Sbjct  65   FKLVHEKSKFVDFQKIKIQESPEEVPAGELPRSLDVILDDDLVDRVKPGDRVTVTGIYRV  124

Query  61   NP  62
             P
Sbjct  125  VP  126



Lambda      K        H        a         alpha
   0.317    0.133    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 691920164


Query= TCONS_00011668

Length=1207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM re...  356     7e-115
CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with G...  167     2e-48 
CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative...  82.4    1e-18 
CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putat...  73.3    2e-16 


>CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM region, putative 
phosphate.  RSN1_7TM is the seven transmembrane domain 
region of putative phosphate transporter. The family is the 
7TM region of osmosensitive calcium-permeable cation channels.
Length=273

 Score = 356 bits (917),  Expect = 7e-115, Method: Composition-based stats.
 Identities = 126/273 (46%), Positives = 183/273 (67%), Gaps = 1/273 (0%)

Query  668  RTFGILAIVCAMVVGWAFPVAFTGLLSQLSYLENAFTWLSWISKLPDWLISAIQGILPPL  727
            R   +   +  +++ WA PVAF GLLS L  L   + +L WI +LP  L+  + G+LPPL
Sbjct  1    RRLIVNLAIFLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILELPPKLLGLVTGLLPPL  60

Query  728  FLAILMALLPLILRFLCRAQGLHTGMAIELTVQNYFFAFLFVQLFLVVAISSSFSTIIDN  787
             L++LMALLP+ILRFL + QG  +   IEL+VQ+ +FAFL V +FLV  ++SS S++I+ 
Sbjct  61   LLSLLMALLPIILRFLSKLQGAPSRSDIELSVQSKYFAFLVVNVFLVFTLASSASSLIEQ  120

Query  788  V-TNVTSWPELLAQNIPSSSNYFFSYMILQALSVSAGALVQIVSLFSWFILAPLLDNTAR  846
            +  N TS P LLA N+P +SN+F +Y++LQ LS +AG L+Q+  L  ++I    LD T R
Sbjct  121  IIDNPTSIPTLLATNLPKASNFFITYILLQGLSGAAGELLQLGPLILFYIKRKFLDKTPR  180

Query  847  KKWGRTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLILVFNVITFGLFWFVYRYNTLYV  906
             K+ R T      +GT +PV+  + +IGLIY VI+PLIL F ++ FGL +FVY+Y  LYV
Sbjct  181  DKYERYTTPPSFDYGTVYPVFLLIFTIGLIYSVIAPLILPFGLVYFGLGYFVYKYQLLYV  240

Query  907  TKFRFDTGGLLFPRAINQLFTGLYVMELSLIGL  939
               ++++GG  +PRA+N+L  GLY+ +L LIGL
Sbjct  241  YVTKYESGGRFWPRALNRLLVGLYLFQLCLIGL  273


>CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport. 
 This family represents the first three transmembrane 
regions of 11-TM proteins involved in vesicle transport. 
In S. cerevisiae these proteins are members of the yeast facilitator 
superfamily and are integral membrane proteins localized 
to the cell periphery, in particular to the bud-neck region. 
The distribution is consistent with a role in late exocytosis 
which is in agreement with the proteins' ability to 
substitute for the function of Sro7p, required for the sorting 
of the protein Enap1 into Golgi-derived vesicles destined 
for the cell surface.
Length=158

 Score = 167 bits (426),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 67/165 (41%), Positives = 94/165 (57%), Gaps = 8/165 (5%)

Query  26   TFLASLATAVIVFAVEFLLFLLLKGKLTRIYQPRTYLVPDRERTKPSPP-GLFSWVGPVF  84
             FL SL   +++  V  LLF +L+ K  R+Y PRTYL P+ ERT P P  GLF W+ P+ 
Sbjct  1    AFLTSLVINLVIALVFLLLFSILRPKNKRVYAPRTYLAPEEERTPPLPGTGLFGWIPPLL  60

Query  85   RTSSSEFIQKCGLDAYFFLRYLRMLLKIFVPLGCIVLPVLLPLNKVDGKDRNFKNATGTG  144
            +    E +Q  GLDAY FLR+L+ML+KIF+    I  P+LLP+N   G           G
Sbjct  61   KIPDEEILQHAGLDAYVFLRFLKMLIKIFLVGCLIGWPILLPVNATGGNGE------DDG  114

Query  145  DTWNVTGLDQLAWGNVAPEHVQRYWAHLIMAIIVIVYVCAVFFDE  189
            D+   TGLD+L+  +   E   R WAH+++A I   +V  + + E
Sbjct  115  DSLTRTGLDKLS-SSNNVEGSNRLWAHVVVAYIFTGFVLYLLYRE  158


>CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative phosphate 
transporter.  PHM7_cyt is the predicted cytosolic domain 
of integral membrane proteins, such as yeast PHM7 and TM63A_HUMAN 
TRANSMEMBRANE PROTEIN 63A. This domain usually precedes 
the 7TM region, pfam02714, and follows a RSN1_TM, pfam13967. 
Fold recognition programs consistently and with high significance 
predict this domain to be distantly homologous to 
RNA binding proteins from the RRM clan.
Length=164

 Score = 82.4 bits (204),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 55/115 (48%), Gaps = 20/115 (17%)

Query  551  WKKYIR----EKDRDTMRLPIFGLSWMPSLWLIGKKVDTIDYCRKEVARLNLEIEIDQQH  606
              KY++     K R T +L   GL         GKKVD IDY  +++  L  EIE +++ 
Sbjct  62   LAKYLKNGKKPKKRPTHKLGFLGL--------FGKKVDAIDYYTEKLEELEEEIEEEREK  113

Query  607  PERFPLMNSAFIQFNHQVAAHMACQAVSHHLPKQMAPRIVEIS----PDDVIWDN  657
             ++ P + +AF+ F  + +A  A        P+ M P+   +     P DVIW+N
Sbjct  114  VDKKP-LGAAFVTFKSERSAAAAAA---QINPQLMHPKGWTVELAPEPRDVIWEN  164


>CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putative phosphate 
transporter.  This PHM7_ext family is found in plants 
and fungi. It represents the C-terminal extracellular domain 
of the putative phosphate transporter, PHM7. The three N-terminal 
TMS are found in family RSN1_TM, pfam02714; the cytoplssmic 
domain is pfam14703, and the remaining 7TM region is 
in pfam02714.
Length=84

 Score = 73.3 bits (181),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (4%)

Query  1122  ELEDLTPDERDQLTQRAFQHDALRAKRPVIWIPRDDLGVSDDEIYRTQRFSKHIWISNEY  1181
                +  P+  ++L + A+ H A+ +K P++WIPRD +GVS  EI       K I IS+E 
Sbjct  11    HEYNDEPEYDEELLKHAYLHPAVTSKPPILWIPRDPMGVSKQEI---AETEKVIPISDEG  67

Query  1182  QALDGKCRTIFSRSPPD  1198
               LD K + +++  PPD
Sbjct  68    AWLDEKGKIVWTGRPPD  84



Lambda      K        H        a         alpha
   0.321    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1549824180


Query= TCONS_00017834

Length=1197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM re...  357     4e-115
CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with G...  167     2e-48 
CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative...  82.4    1e-18 
CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putat...  71.0    1e-15 


>CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM region, putative 
phosphate.  RSN1_7TM is the seven transmembrane domain 
region of putative phosphate transporter. The family is the 
7TM region of osmosensitive calcium-permeable cation channels.
Length=273

 Score = 357 bits (918),  Expect = 4e-115, Method: Composition-based stats.
 Identities = 126/273 (46%), Positives = 183/273 (67%), Gaps = 1/273 (0%)

Query  668  RTFGILAIVCAMVVGWAFPVAFTGLLSQLSYLENAFTWLSWISKLPDWLISAIQGILPPL  727
            R   +   +  +++ WA PVAF GLLS L  L   + +L WI +LP  L+  + G+LPPL
Sbjct  1    RRLIVNLAIFLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILELPPKLLGLVTGLLPPL  60

Query  728  FLAILMALLPLILRFLCRAQGLHTGMAIELTVQNYFFAFLFVQLFLVVAISSSFSTIIDN  787
             L++LMALLP+ILRFL + QG  +   IEL+VQ+ +FAFL V +FLV  ++SS S++I+ 
Sbjct  61   LLSLLMALLPIILRFLSKLQGAPSRSDIELSVQSKYFAFLVVNVFLVFTLASSASSLIEQ  120

Query  788  V-TNVTSWPELLAQNIPSSSNYFFSYMILQALSVSAGALVQIVSLFSWFILAPLLDNTAR  846
            +  N TS P LLA N+P +SN+F +Y++LQ LS +AG L+Q+  L  ++I    LD T R
Sbjct  121  IIDNPTSIPTLLATNLPKASNFFITYILLQGLSGAAGELLQLGPLILFYIKRKFLDKTPR  180

Query  847  KKWGRTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLILVFNVITFGLFWFVYRYNTLYV  906
             K+ R T      +GT +PV+  + +IGLIY VI+PLIL F ++ FGL +FVY+Y  LYV
Sbjct  181  DKYERYTTPPSFDYGTVYPVFLLIFTIGLIYSVIAPLILPFGLVYFGLGYFVYKYQLLYV  240

Query  907  TKFRFDTGGLLFPRAINQLFTGLYVMELSLIGL  939
               ++++GG  +PRA+N+L  GLY+ +L LIGL
Sbjct  241  YVTKYESGGRFWPRALNRLLVGLYLFQLCLIGL  273


>CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport. 
 This family represents the first three transmembrane 
regions of 11-TM proteins involved in vesicle transport. 
In S. cerevisiae these proteins are members of the yeast facilitator 
superfamily and are integral membrane proteins localized 
to the cell periphery, in particular to the bud-neck region. 
The distribution is consistent with a role in late exocytosis 
which is in agreement with the proteins' ability to 
substitute for the function of Sro7p, required for the sorting 
of the protein Enap1 into Golgi-derived vesicles destined 
for the cell surface.
Length=158

 Score = 167 bits (426),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 67/165 (41%), Positives = 94/165 (57%), Gaps = 8/165 (5%)

Query  26   TFLASLATAVIVFAVEFLLFLLLKGKLTRIYQPRTYLVPDRERTKPSPP-GLFSWVGPVF  84
             FL SL   +++  V  LLF +L+ K  R+Y PRTYL P+ ERT P P  GLF W+ P+ 
Sbjct  1    AFLTSLVINLVIALVFLLLFSILRPKNKRVYAPRTYLAPEEERTPPLPGTGLFGWIPPLL  60

Query  85   RTSSSEFIQKCGLDAYFFLRYLRMLLKIFVPLGCIVLPVLLPLNKVDGKDRNFKNATGTG  144
            +    E +Q  GLDAY FLR+L+ML+KIF+    I  P+LLP+N   G           G
Sbjct  61   KIPDEEILQHAGLDAYVFLRFLKMLIKIFLVGCLIGWPILLPVNATGGNGE------DDG  114

Query  145  DTWNVTGLDQLAWGNVAPEHVQRYWAHLIMAIIVIVYVCAVFFDE  189
            D+   TGLD+L+  +   E   R WAH+++A I   +V  + + E
Sbjct  115  DSLTRTGLDKLS-SSNNVEGSNRLWAHVVVAYIFTGFVLYLLYRE  158


>CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative phosphate 
transporter.  PHM7_cyt is the predicted cytosolic domain 
of integral membrane proteins, such as yeast PHM7 and TM63A_HUMAN 
TRANSMEMBRANE PROTEIN 63A. This domain usually precedes 
the 7TM region, pfam02714, and follows a RSN1_TM, pfam13967. 
Fold recognition programs consistently and with high significance 
predict this domain to be distantly homologous to 
RNA binding proteins from the RRM clan.
Length=164

 Score = 82.4 bits (204),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 55/115 (48%), Gaps = 20/115 (17%)

Query  551  WKKYIR----EKDRDTMRLPIFGLSWMPSLWLIGKKVDTIDYCRKEVARLNLEIEIDQQH  606
              KY++     K R T +L   GL         GKKVD IDY  +++  L  EIE +++ 
Sbjct  62   LAKYLKNGKKPKKRPTHKLGFLGL--------FGKKVDAIDYYTEKLEELEEEIEEEREK  113

Query  607  PERFPLMNSAFIQFNHQVAAHMACQAVSHHLPKQMAPRIVEIS----PDDVIWDN  657
             ++ P + +AF+ F  + +A  A        P+ M P+   +     P DVIW+N
Sbjct  114  VDKKP-LGAAFVTFKSERSAAAAAA---QINPQLMHPKGWTVELAPEPRDVIWEN  164


>CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putative phosphate 
transporter.  This PHM7_ext family is found in plants 
and fungi. It represents the C-terminal extracellular domain 
of the putative phosphate transporter, PHM7. The three N-terminal 
TMS are found in family RSN1_TM, pfam02714; the cytoplssmic 
domain is pfam14703, and the remaining 7TM region is 
in pfam02714.
Length=84

 Score = 71.0 bits (175),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 27/76 (36%), Positives = 43/76 (57%), Gaps = 3/76 (4%)

Query  1122  ELEDLTPDERDQLTQRAFQHDALRAKRPVIWIPRDDLGVSDDEIYRTQRFSKHIWISNEY  1181
                +  P+  ++L + A+ H A+ +K P++WIPRD +GVS  EI       K I IS+E 
Sbjct  11    HEYNDEPEYDEELLKHAYLHPAVTSKPPILWIPRDPMGVSKQEI---AETEKVIPISDEG  67

Query  1182  QALDGKCRTIFSRSPP  1197
               LD K + +++  PP
Sbjct  68    AWLDEKGKIVWTGRPP  83



Lambda      K        H        a         alpha
   0.321    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1535861800


Query= TCONS_00011669

Length=1207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM re...  356     7e-115
CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with G...  167     2e-48 
CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative...  82.4    1e-18 
CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putat...  73.3    2e-16 


>CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM region, putative 
phosphate.  RSN1_7TM is the seven transmembrane domain 
region of putative phosphate transporter. The family is the 
7TM region of osmosensitive calcium-permeable cation channels.
Length=273

 Score = 356 bits (917),  Expect = 7e-115, Method: Composition-based stats.
 Identities = 126/273 (46%), Positives = 183/273 (67%), Gaps = 1/273 (0%)

Query  668  RTFGILAIVCAMVVGWAFPVAFTGLLSQLSYLENAFTWLSWISKLPDWLISAIQGILPPL  727
            R   +   +  +++ WA PVAF GLLS L  L   + +L WI +LP  L+  + G+LPPL
Sbjct  1    RRLIVNLAIFLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILELPPKLLGLVTGLLPPL  60

Query  728  FLAILMALLPLILRFLCRAQGLHTGMAIELTVQNYFFAFLFVQLFLVVAISSSFSTIIDN  787
             L++LMALLP+ILRFL + QG  +   IEL+VQ+ +FAFL V +FLV  ++SS S++I+ 
Sbjct  61   LLSLLMALLPIILRFLSKLQGAPSRSDIELSVQSKYFAFLVVNVFLVFTLASSASSLIEQ  120

Query  788  V-TNVTSWPELLAQNIPSSSNYFFSYMILQALSVSAGALVQIVSLFSWFILAPLLDNTAR  846
            +  N TS P LLA N+P +SN+F +Y++LQ LS +AG L+Q+  L  ++I    LD T R
Sbjct  121  IIDNPTSIPTLLATNLPKASNFFITYILLQGLSGAAGELLQLGPLILFYIKRKFLDKTPR  180

Query  847  KKWGRTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLILVFNVITFGLFWFVYRYNTLYV  906
             K+ R T      +GT +PV+  + +IGLIY VI+PLIL F ++ FGL +FVY+Y  LYV
Sbjct  181  DKYERYTTPPSFDYGTVYPVFLLIFTIGLIYSVIAPLILPFGLVYFGLGYFVYKYQLLYV  240

Query  907  TKFRFDTGGLLFPRAINQLFTGLYVMELSLIGL  939
               ++++GG  +PRA+N+L  GLY+ +L LIGL
Sbjct  241  YVTKYESGGRFWPRALNRLLVGLYLFQLCLIGL  273


>CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport. 
 This family represents the first three transmembrane 
regions of 11-TM proteins involved in vesicle transport. 
In S. cerevisiae these proteins are members of the yeast facilitator 
superfamily and are integral membrane proteins localized 
to the cell periphery, in particular to the bud-neck region. 
The distribution is consistent with a role in late exocytosis 
which is in agreement with the proteins' ability to 
substitute for the function of Sro7p, required for the sorting 
of the protein Enap1 into Golgi-derived vesicles destined 
for the cell surface.
Length=158

 Score = 167 bits (426),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 67/165 (41%), Positives = 94/165 (57%), Gaps = 8/165 (5%)

Query  26   TFLASLATAVIVFAVEFLLFLLLKGKLTRIYQPRTYLVPDRERTKPSPP-GLFSWVGPVF  84
             FL SL   +++  V  LLF +L+ K  R+Y PRTYL P+ ERT P P  GLF W+ P+ 
Sbjct  1    AFLTSLVINLVIALVFLLLFSILRPKNKRVYAPRTYLAPEEERTPPLPGTGLFGWIPPLL  60

Query  85   RTSSSEFIQKCGLDAYFFLRYLRMLLKIFVPLGCIVLPVLLPLNKVDGKDRNFKNATGTG  144
            +    E +Q  GLDAY FLR+L+ML+KIF+    I  P+LLP+N   G           G
Sbjct  61   KIPDEEILQHAGLDAYVFLRFLKMLIKIFLVGCLIGWPILLPVNATGGNGE------DDG  114

Query  145  DTWNVTGLDQLAWGNVAPEHVQRYWAHLIMAIIVIVYVCAVFFDE  189
            D+   TGLD+L+  +   E   R WAH+++A I   +V  + + E
Sbjct  115  DSLTRTGLDKLS-SSNNVEGSNRLWAHVVVAYIFTGFVLYLLYRE  158


>CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative phosphate 
transporter.  PHM7_cyt is the predicted cytosolic domain 
of integral membrane proteins, such as yeast PHM7 and TM63A_HUMAN 
TRANSMEMBRANE PROTEIN 63A. This domain usually precedes 
the 7TM region, pfam02714, and follows a RSN1_TM, pfam13967. 
Fold recognition programs consistently and with high significance 
predict this domain to be distantly homologous to 
RNA binding proteins from the RRM clan.
Length=164

 Score = 82.4 bits (204),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 55/115 (48%), Gaps = 20/115 (17%)

Query  551  WKKYIR----EKDRDTMRLPIFGLSWMPSLWLIGKKVDTIDYCRKEVARLNLEIEIDQQH  606
              KY++     K R T +L   GL         GKKVD IDY  +++  L  EIE +++ 
Sbjct  62   LAKYLKNGKKPKKRPTHKLGFLGL--------FGKKVDAIDYYTEKLEELEEEIEEEREK  113

Query  607  PERFPLMNSAFIQFNHQVAAHMACQAVSHHLPKQMAPRIVEIS----PDDVIWDN  657
             ++ P + +AF+ F  + +A  A        P+ M P+   +     P DVIW+N
Sbjct  114  VDKKP-LGAAFVTFKSERSAAAAAA---QINPQLMHPKGWTVELAPEPRDVIWEN  164


>CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putative phosphate 
transporter.  This PHM7_ext family is found in plants 
and fungi. It represents the C-terminal extracellular domain 
of the putative phosphate transporter, PHM7. The three N-terminal 
TMS are found in family RSN1_TM, pfam02714; the cytoplssmic 
domain is pfam14703, and the remaining 7TM region is 
in pfam02714.
Length=84

 Score = 73.3 bits (181),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (4%)

Query  1122  ELEDLTPDERDQLTQRAFQHDALRAKRPVIWIPRDDLGVSDDEIYRTQRFSKHIWISNEY  1181
                +  P+  ++L + A+ H A+ +K P++WIPRD +GVS  EI       K I IS+E 
Sbjct  11    HEYNDEPEYDEELLKHAYLHPAVTSKPPILWIPRDPMGVSKQEI---AETEKVIPISDEG  67

Query  1182  QALDGKCRTIFSRSPPD  1198
               LD K + +++  PPD
Sbjct  68    AWLDEKGKIVWTGRPPD  84



Lambda      K        H        a         alpha
   0.321    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1549824180


Query= TCONS_00017835

Length=1207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM re...  356     7e-115
CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with G...  167     2e-48 
CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative...  82.4    1e-18 
CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putat...  73.3    2e-16 


>CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM region, putative 
phosphate.  RSN1_7TM is the seven transmembrane domain 
region of putative phosphate transporter. The family is the 
7TM region of osmosensitive calcium-permeable cation channels.
Length=273

 Score = 356 bits (917),  Expect = 7e-115, Method: Composition-based stats.
 Identities = 126/273 (46%), Positives = 183/273 (67%), Gaps = 1/273 (0%)

Query  668  RTFGILAIVCAMVVGWAFPVAFTGLLSQLSYLENAFTWLSWISKLPDWLISAIQGILPPL  727
            R   +   +  +++ WA PVAF GLLS L  L   + +L WI +LP  L+  + G+LPPL
Sbjct  1    RRLIVNLAIFLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILELPPKLLGLVTGLLPPL  60

Query  728  FLAILMALLPLILRFLCRAQGLHTGMAIELTVQNYFFAFLFVQLFLVVAISSSFSTIIDN  787
             L++LMALLP+ILRFL + QG  +   IEL+VQ+ +FAFL V +FLV  ++SS S++I+ 
Sbjct  61   LLSLLMALLPIILRFLSKLQGAPSRSDIELSVQSKYFAFLVVNVFLVFTLASSASSLIEQ  120

Query  788  V-TNVTSWPELLAQNIPSSSNYFFSYMILQALSVSAGALVQIVSLFSWFILAPLLDNTAR  846
            +  N TS P LLA N+P +SN+F +Y++LQ LS +AG L+Q+  L  ++I    LD T R
Sbjct  121  IIDNPTSIPTLLATNLPKASNFFITYILLQGLSGAAGELLQLGPLILFYIKRKFLDKTPR  180

Query  847  KKWGRTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLILVFNVITFGLFWFVYRYNTLYV  906
             K+ R T      +GT +PV+  + +IGLIY VI+PLIL F ++ FGL +FVY+Y  LYV
Sbjct  181  DKYERYTTPPSFDYGTVYPVFLLIFTIGLIYSVIAPLILPFGLVYFGLGYFVYKYQLLYV  240

Query  907  TKFRFDTGGLLFPRAINQLFTGLYVMELSLIGL  939
               ++++GG  +PRA+N+L  GLY+ +L LIGL
Sbjct  241  YVTKYESGGRFWPRALNRLLVGLYLFQLCLIGL  273


>CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport. 
 This family represents the first three transmembrane 
regions of 11-TM proteins involved in vesicle transport. 
In S. cerevisiae these proteins are members of the yeast facilitator 
superfamily and are integral membrane proteins localized 
to the cell periphery, in particular to the bud-neck region. 
The distribution is consistent with a role in late exocytosis 
which is in agreement with the proteins' ability to 
substitute for the function of Sro7p, required for the sorting 
of the protein Enap1 into Golgi-derived vesicles destined 
for the cell surface.
Length=158

 Score = 167 bits (426),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 67/165 (41%), Positives = 94/165 (57%), Gaps = 8/165 (5%)

Query  26   TFLASLATAVIVFAVEFLLFLLLKGKLTRIYQPRTYLVPDRERTKPSPP-GLFSWVGPVF  84
             FL SL   +++  V  LLF +L+ K  R+Y PRTYL P+ ERT P P  GLF W+ P+ 
Sbjct  1    AFLTSLVINLVIALVFLLLFSILRPKNKRVYAPRTYLAPEEERTPPLPGTGLFGWIPPLL  60

Query  85   RTSSSEFIQKCGLDAYFFLRYLRMLLKIFVPLGCIVLPVLLPLNKVDGKDRNFKNATGTG  144
            +    E +Q  GLDAY FLR+L+ML+KIF+    I  P+LLP+N   G           G
Sbjct  61   KIPDEEILQHAGLDAYVFLRFLKMLIKIFLVGCLIGWPILLPVNATGGNGE------DDG  114

Query  145  DTWNVTGLDQLAWGNVAPEHVQRYWAHLIMAIIVIVYVCAVFFDE  189
            D+   TGLD+L+  +   E   R WAH+++A I   +V  + + E
Sbjct  115  DSLTRTGLDKLS-SSNNVEGSNRLWAHVVVAYIFTGFVLYLLYRE  158


>CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative phosphate 
transporter.  PHM7_cyt is the predicted cytosolic domain 
of integral membrane proteins, such as yeast PHM7 and TM63A_HUMAN 
TRANSMEMBRANE PROTEIN 63A. This domain usually precedes 
the 7TM region, pfam02714, and follows a RSN1_TM, pfam13967. 
Fold recognition programs consistently and with high significance 
predict this domain to be distantly homologous to 
RNA binding proteins from the RRM clan.
Length=164

 Score = 82.4 bits (204),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 55/115 (48%), Gaps = 20/115 (17%)

Query  551  WKKYIR----EKDRDTMRLPIFGLSWMPSLWLIGKKVDTIDYCRKEVARLNLEIEIDQQH  606
              KY++     K R T +L   GL         GKKVD IDY  +++  L  EIE +++ 
Sbjct  62   LAKYLKNGKKPKKRPTHKLGFLGL--------FGKKVDAIDYYTEKLEELEEEIEEEREK  113

Query  607  PERFPLMNSAFIQFNHQVAAHMACQAVSHHLPKQMAPRIVEIS----PDDVIWDN  657
             ++ P + +AF+ F  + +A  A        P+ M P+   +     P DVIW+N
Sbjct  114  VDKKP-LGAAFVTFKSERSAAAAAA---QINPQLMHPKGWTVELAPEPRDVIWEN  164


>CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putative phosphate 
transporter.  This PHM7_ext family is found in plants 
and fungi. It represents the C-terminal extracellular domain 
of the putative phosphate transporter, PHM7. The three N-terminal 
TMS are found in family RSN1_TM, pfam02714; the cytoplssmic 
domain is pfam14703, and the remaining 7TM region is 
in pfam02714.
Length=84

 Score = 73.3 bits (181),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (4%)

Query  1122  ELEDLTPDERDQLTQRAFQHDALRAKRPVIWIPRDDLGVSDDEIYRTQRFSKHIWISNEY  1181
                +  P+  ++L + A+ H A+ +K P++WIPRD +GVS  EI       K I IS+E 
Sbjct  11    HEYNDEPEYDEELLKHAYLHPAVTSKPPILWIPRDPMGVSKQEI---AETEKVIPISDEG  67

Query  1182  QALDGKCRTIFSRSPPD  1198
               LD K + +++  PPD
Sbjct  68    AWLDEKGKIVWTGRPPD  84



Lambda      K        H        a         alpha
   0.321    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1549824180


Query= TCONS_00011670

Length=786
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM re...  261     6e-82
CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative...  82.8    6e-19
CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with G...  76.1    1e-16


>CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM region, putative 
phosphate.  RSN1_7TM is the seven transmembrane domain 
region of putative phosphate transporter. The family is the 
7TM region of osmosensitive calcium-permeable cation channels.
Length=273

 Score = 261 bits (669),  Expect = 6e-82, Method: Composition-based stats.
 Identities = 91/209 (44%), Positives = 135/209 (65%), Gaps = 1/209 (0%)

Query  561  RTFGILAIVCAMVVGWAFPVAFTGLLSQLSYLENAFTWLSWISKLPDWLISAIQGILPPL  620
            R   +   +  +++ WA PVAF GLLS L  L   + +L WI +LP  L+  + G+LPPL
Sbjct  1    RRLIVNLAIFLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILELPPKLLGLVTGLLPPL  60

Query  621  FLAILMALLPLILRFLCRAQGLHTGMAIELTVQNYFFAFLFVQLFLVVAISSSFSTIIDN  680
             L++LMALLP+ILRFL + QG  +   IEL+VQ+ +FAFL V +FLV  ++SS S++I+ 
Sbjct  61   LLSLLMALLPIILRFLSKLQGAPSRSDIELSVQSKYFAFLVVNVFLVFTLASSASSLIEQ  120

Query  681  V-TNVTSWPELLAQNIPSSSNYFFSYMILQALSVSAGALVQIVSLFSWFILAPLLDNTAR  739
            +  N TS P LLA N+P +SN+F +Y++LQ LS +AG L+Q+  L  ++I    LD T R
Sbjct  121  IIDNPTSIPTLLATNLPKASNFFITYILLQGLSGAAGELLQLGPLILFYIKRKFLDKTPR  180

Query  740  KKWGRTTNLNQMQWGTFFPVYTTLASIGM  768
             K+ R T      +GT +PV+  + +IG+
Sbjct  181  DKYERYTTPPSFDYGTVYPVFLLIFTIGL  209


>CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative phosphate 
transporter.  PHM7_cyt is the predicted cytosolic domain 
of integral membrane proteins, such as yeast PHM7 and TM63A_HUMAN 
TRANSMEMBRANE PROTEIN 63A. This domain usually precedes 
the 7TM region, pfam02714, and follows a RSN1_TM, pfam13967. 
Fold recognition programs consistently and with high significance 
predict this domain to be distantly homologous to 
RNA binding proteins from the RRM clan.
Length=164

 Score = 82.8 bits (205),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 55/115 (48%), Gaps = 20/115 (17%)

Query  444  WKKYIR----EKDRDTMRLPIFGLSWMPSLWLIGKKVDTIDYCRKEVARLNLEIEIDQQH  499
              KY++     K R T +L   GL         GKKVD IDY  +++  L  EIE +++ 
Sbjct  62   LAKYLKNGKKPKKRPTHKLGFLGL--------FGKKVDAIDYYTEKLEELEEEIEEEREK  113

Query  500  PERFPLMNSAFIQFNHQVAAHMACQAVSHHLPKQMAPRIVEIS----PDDVIWDN  550
             ++ P + +AF+ F  + +A  A        P+ M P+   +     P DVIW+N
Sbjct  114  VDKKP-LGAAFVTFKSERSAAAAAA---QINPQLMHPKGWTVELAPEPRDVIWEN  164


>CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport. 
 This family represents the first three transmembrane 
regions of 11-TM proteins involved in vesicle transport. 
In S. cerevisiae these proteins are members of the yeast facilitator 
superfamily and are integral membrane proteins localized 
to the cell periphery, in particular to the bud-neck region. 
The distribution is consistent with a role in late exocytosis 
which is in agreement with the proteins' ability to 
substitute for the function of Sro7p, required for the sorting 
of the protein Enap1 into Golgi-derived vesicles destined 
for the cell surface.
Length=158

 Score = 76.1 bits (188),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 7/82 (9%)

Query  1    MLLKIFVPLGCIVLPVLLPLNKVDGKDRNFKNATGTGDTWNVTGLDQLAWGNVAPEHVQR  60
            ML+KIF+    I  P+LLP+N   G           GD+   TGLD+L+  +   E   R
Sbjct  84   MLIKIFLVGCLIGWPILLPVNATGGNGE------DDGDSLTRTGLDKLS-SSNNVEGSNR  136

Query  61   YWAHLIMAIIVIVYVCAVFFDE  82
             WAH+++A I   +V  + + E
Sbjct  137  LWAHVVVAYIFTGFVLYLLYRE  158



Lambda      K        H        a         alpha
   0.319    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1006965184


Query= TCONS_00011671

Length=1207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM re...  356     7e-115
CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with G...  167     2e-48 
CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative...  82.4    1e-18 
CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putat...  73.3    2e-16 


>CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM region, putative 
phosphate.  RSN1_7TM is the seven transmembrane domain 
region of putative phosphate transporter. The family is the 
7TM region of osmosensitive calcium-permeable cation channels.
Length=273

 Score = 356 bits (917),  Expect = 7e-115, Method: Composition-based stats.
 Identities = 126/273 (46%), Positives = 183/273 (67%), Gaps = 1/273 (0%)

Query  668  RTFGILAIVCAMVVGWAFPVAFTGLLSQLSYLENAFTWLSWISKLPDWLISAIQGILPPL  727
            R   +   +  +++ WA PVAF GLLS L  L   + +L WI +LP  L+  + G+LPPL
Sbjct  1    RRLIVNLAIFLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILELPPKLLGLVTGLLPPL  60

Query  728  FLAILMALLPLILRFLCRAQGLHTGMAIELTVQNYFFAFLFVQLFLVVAISSSFSTIIDN  787
             L++LMALLP+ILRFL + QG  +   IEL+VQ+ +FAFL V +FLV  ++SS S++I+ 
Sbjct  61   LLSLLMALLPIILRFLSKLQGAPSRSDIELSVQSKYFAFLVVNVFLVFTLASSASSLIEQ  120

Query  788  V-TNVTSWPELLAQNIPSSSNYFFSYMILQALSVSAGALVQIVSLFSWFILAPLLDNTAR  846
            +  N TS P LLA N+P +SN+F +Y++LQ LS +AG L+Q+  L  ++I    LD T R
Sbjct  121  IIDNPTSIPTLLATNLPKASNFFITYILLQGLSGAAGELLQLGPLILFYIKRKFLDKTPR  180

Query  847  KKWGRTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLILVFNVITFGLFWFVYRYNTLYV  906
             K+ R T      +GT +PV+  + +IGLIY VI+PLIL F ++ FGL +FVY+Y  LYV
Sbjct  181  DKYERYTTPPSFDYGTVYPVFLLIFTIGLIYSVIAPLILPFGLVYFGLGYFVYKYQLLYV  240

Query  907  TKFRFDTGGLLFPRAINQLFTGLYVMELSLIGL  939
               ++++GG  +PRA+N+L  GLY+ +L LIGL
Sbjct  241  YVTKYESGGRFWPRALNRLLVGLYLFQLCLIGL  273


>CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport. 
 This family represents the first three transmembrane 
regions of 11-TM proteins involved in vesicle transport. 
In S. cerevisiae these proteins are members of the yeast facilitator 
superfamily and are integral membrane proteins localized 
to the cell periphery, in particular to the bud-neck region. 
The distribution is consistent with a role in late exocytosis 
which is in agreement with the proteins' ability to 
substitute for the function of Sro7p, required for the sorting 
of the protein Enap1 into Golgi-derived vesicles destined 
for the cell surface.
Length=158

 Score = 167 bits (426),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 67/165 (41%), Positives = 94/165 (57%), Gaps = 8/165 (5%)

Query  26   TFLASLATAVIVFAVEFLLFLLLKGKLTRIYQPRTYLVPDRERTKPSPP-GLFSWVGPVF  84
             FL SL   +++  V  LLF +L+ K  R+Y PRTYL P+ ERT P P  GLF W+ P+ 
Sbjct  1    AFLTSLVINLVIALVFLLLFSILRPKNKRVYAPRTYLAPEEERTPPLPGTGLFGWIPPLL  60

Query  85   RTSSSEFIQKCGLDAYFFLRYLRMLLKIFVPLGCIVLPVLLPLNKVDGKDRNFKNATGTG  144
            +    E +Q  GLDAY FLR+L+ML+KIF+    I  P+LLP+N   G           G
Sbjct  61   KIPDEEILQHAGLDAYVFLRFLKMLIKIFLVGCLIGWPILLPVNATGGNGE------DDG  114

Query  145  DTWNVTGLDQLAWGNVAPEHVQRYWAHLIMAIIVIVYVCAVFFDE  189
            D+   TGLD+L+  +   E   R WAH+++A I   +V  + + E
Sbjct  115  DSLTRTGLDKLS-SSNNVEGSNRLWAHVVVAYIFTGFVLYLLYRE  158


>CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative phosphate 
transporter.  PHM7_cyt is the predicted cytosolic domain 
of integral membrane proteins, such as yeast PHM7 and TM63A_HUMAN 
TRANSMEMBRANE PROTEIN 63A. This domain usually precedes 
the 7TM region, pfam02714, and follows a RSN1_TM, pfam13967. 
Fold recognition programs consistently and with high significance 
predict this domain to be distantly homologous to 
RNA binding proteins from the RRM clan.
Length=164

 Score = 82.4 bits (204),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 55/115 (48%), Gaps = 20/115 (17%)

Query  551  WKKYIR----EKDRDTMRLPIFGLSWMPSLWLIGKKVDTIDYCRKEVARLNLEIEIDQQH  606
              KY++     K R T +L   GL         GKKVD IDY  +++  L  EIE +++ 
Sbjct  62   LAKYLKNGKKPKKRPTHKLGFLGL--------FGKKVDAIDYYTEKLEELEEEIEEEREK  113

Query  607  PERFPLMNSAFIQFNHQVAAHMACQAVSHHLPKQMAPRIVEIS----PDDVIWDN  657
             ++ P + +AF+ F  + +A  A        P+ M P+   +     P DVIW+N
Sbjct  114  VDKKP-LGAAFVTFKSERSAAAAAA---QINPQLMHPKGWTVELAPEPRDVIWEN  164


>CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putative phosphate 
transporter.  This PHM7_ext family is found in plants 
and fungi. It represents the C-terminal extracellular domain 
of the putative phosphate transporter, PHM7. The three N-terminal 
TMS are found in family RSN1_TM, pfam02714; the cytoplssmic 
domain is pfam14703, and the remaining 7TM region is 
in pfam02714.
Length=84

 Score = 73.3 bits (181),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (4%)

Query  1122  ELEDLTPDERDQLTQRAFQHDALRAKRPVIWIPRDDLGVSDDEIYRTQRFSKHIWISNEY  1181
                +  P+  ++L + A+ H A+ +K P++WIPRD +GVS  EI       K I IS+E 
Sbjct  11    HEYNDEPEYDEELLKHAYLHPAVTSKPPILWIPRDPMGVSKQEI---AETEKVIPISDEG  67

Query  1182  QALDGKCRTIFSRSPPD  1198
               LD K + +++  PPD
Sbjct  68    AWLDEKGKIVWTGRPPD  84



Lambda      K        H        a         alpha
   0.321    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1549824180


Query= TCONS_00011672

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00017836

Length=727
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459718 pfam00221, Lyase_aromatic, Aromatic amino acid lyase. ...  560     0.0  


>CDD:459718 pfam00221, Lyase_aromatic, Aromatic amino acid lyase.  This family 
includes proteins with phenylalanine ammonia-lyase, EC:4.3.1.24, 
histidine ammonia-lyase, EC:4.3.1.3, and tyrosine 
aminomutase, EC:5.4.3.6, activities.
Length=464

 Score = 560 bits (1446),  Expect = 0.0, Method: Composition-based stats.
 Identities = 184/497 (37%), Positives = 257/497 (52%), Gaps = 42/497 (8%)

Query  36   LDIAAVVAVAHHGCIPRMTMDPVVRGSIEASVRVLMDHLDKGYCVYGVNTGFGGSADSRT  95
            L +  VVAVA  G   ++ + P  R  + AS  +L + L +G  VYGVNTGFG  AD R 
Sbjct  1    LTLEDVVAVARGG--AKVELSPEARERVAASRALLEEILAEGRPVYGVNTGFGALADVRI  58

Query  96   DRVVALQSGLLQLLQAGVLVRSDKGLQCQQQQSLESHA------MPASWVRGTMLVRCNS  149
                                  +   Q Q+   + SHA      +P   VR  ML+R NS
Sbjct  59   PP--------------------EDLEQLQRNL-IRSHAAGVGEPLPEEVVRAMMLLRLNS  97

Query  150  NARGHSAVSLPVIESLLRLIENHITPVVPLRGSISASGDLMPLSYIAGAIEGSPDVYVQV  209
             ARG+S V   V+E L+ L+   ITPVVP RGS+ ASGDL PL++IA A+ G  +VY + 
Sbjct  98   LARGYSGVRPEVVERLVALLNAGITPVVPERGSVGASGDLAPLAHIALALIGEGEVYYK-  156

Query  210  QDADKTRIMNSRDALLSTGLEAQTLGPKEGLGLVNGTSASAALASLVMYEAHQLAVLVQA  269
                    M + +AL + GLE   LGPKEGL L+NGT+   ALA+L +++A +L  L   
Sbjct  157  -----GERMPAAEALAAAGLEPLELGPKEGLALINGTAVMTALAALALHDAERLLRLADV  211

Query  270  LSAVTVEALMGNAESFHPFISAIRPHDGQIECARNVLSFLQGSQLAQNVERDLKDRNRPG  329
             +A+++EAL G+ + F P I A+RPH GQIE A N+ + L GS+L +         +   
Sbjct  212  AAALSLEALRGSDDPFDPRIHALRPHPGQIEVAANLRALLAGSELIR------SHPDCAR  265

Query  330  LIQDRYALRTVPQWIGPQLEDLLLAHHQVTVELNSSCDNPLVDMQSGDIFYGGNFQAVSI  389
            L+QD Y+LR  PQ  G   + L  A   + +ELNS  DNPLVD + G++  GGNF    +
Sbjct  266  LVQDPYSLRCAPQVHGAARDALAYAREVLEIELNSVTDNPLVDFEDGEVLSGGNFHGQPV  325

Query  390  TSAMEKTRTCLQMFGRLLFAQATELIDPNLNNGLPTNLVADDPSLSFTMKGVDISMASYM  449
              AM+     L   G L   +   L++P LNNGLP  L ADDP L+        + A+ +
Sbjct  326  ALAMDFLAIALAELGNLSERRIARLVNPALNNGLPPFLAADDPGLNSGFMIAQYTAAALV  385

Query  450  AELAYLANPVSSHVQTAEMHNQSVNSMAFVSSRYTMQAVEIVSLMCACSVYIGCQALDLR  509
            +E   LA+P S          +   SM  +++R   Q VE +  + A  +    QALDLR
Sbjct  386  SENKVLAHPASVDSIPTSAGQEDHVSMGTIAARKLRQIVENLERVLAIELLAAAQALDLR  445

Query  510  VLHLTFLQRSTQQLHAL  526
               L  L   T+  +A 
Sbjct  446  RRPLK-LSPGTEAAYAA  461



Lambda      K        H        a         alpha
   0.318    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 921111216


Query= TCONS_00011674

Length=727
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459718 pfam00221, Lyase_aromatic, Aromatic amino acid lyase. ...  560     0.0  


>CDD:459718 pfam00221, Lyase_aromatic, Aromatic amino acid lyase.  This family 
includes proteins with phenylalanine ammonia-lyase, EC:4.3.1.24, 
histidine ammonia-lyase, EC:4.3.1.3, and tyrosine 
aminomutase, EC:5.4.3.6, activities.
Length=464

 Score = 560 bits (1446),  Expect = 0.0, Method: Composition-based stats.
 Identities = 184/497 (37%), Positives = 257/497 (52%), Gaps = 42/497 (8%)

Query  36   LDIAAVVAVAHHGCIPRMTMDPVVRGSIEASVRVLMDHLDKGYCVYGVNTGFGGSADSRT  95
            L +  VVAVA  G   ++ + P  R  + AS  +L + L +G  VYGVNTGFG  AD R 
Sbjct  1    LTLEDVVAVARGG--AKVELSPEARERVAASRALLEEILAEGRPVYGVNTGFGALADVRI  58

Query  96   DRVVALQSGLLQLLQAGVLVRSDKGLQCQQQQSLESHA------MPASWVRGTMLVRCNS  149
                                  +   Q Q+   + SHA      +P   VR  ML+R NS
Sbjct  59   PP--------------------EDLEQLQRNL-IRSHAAGVGEPLPEEVVRAMMLLRLNS  97

Query  150  NARGHSAVSLPVIESLLRLIENHITPVVPLRGSISASGDLMPLSYIAGAIEGSPDVYVQV  209
             ARG+S V   V+E L+ L+   ITPVVP RGS+ ASGDL PL++IA A+ G  +VY + 
Sbjct  98   LARGYSGVRPEVVERLVALLNAGITPVVPERGSVGASGDLAPLAHIALALIGEGEVYYK-  156

Query  210  QDADKTRIMNSRDALLSTGLEAQTLGPKEGLGLVNGTSASAALASLVMYEAHQLAVLVQA  269
                    M + +AL + GLE   LGPKEGL L+NGT+   ALA+L +++A +L  L   
Sbjct  157  -----GERMPAAEALAAAGLEPLELGPKEGLALINGTAVMTALAALALHDAERLLRLADV  211

Query  270  LSAVTVEALMGNAESFHPFISAIRPHDGQIECARNVLSFLQGSQLAQNVERDLKDRNRPG  329
             +A+++EAL G+ + F P I A+RPH GQIE A N+ + L GS+L +         +   
Sbjct  212  AAALSLEALRGSDDPFDPRIHALRPHPGQIEVAANLRALLAGSELIR------SHPDCAR  265

Query  330  LIQDRYALRTVPQWIGPQLEDLLLAHHQVTVELNSSCDNPLVDMQSGDIFYGGNFQAVSI  389
            L+QD Y+LR  PQ  G   + L  A   + +ELNS  DNPLVD + G++  GGNF    +
Sbjct  266  LVQDPYSLRCAPQVHGAARDALAYAREVLEIELNSVTDNPLVDFEDGEVLSGGNFHGQPV  325

Query  390  TSAMEKTRTCLQMFGRLLFAQATELIDPNLNNGLPTNLVADDPSLSFTMKGVDISMASYM  449
              AM+     L   G L   +   L++P LNNGLP  L ADDP L+        + A+ +
Sbjct  326  ALAMDFLAIALAELGNLSERRIARLVNPALNNGLPPFLAADDPGLNSGFMIAQYTAAALV  385

Query  450  AELAYLANPVSSHVQTAEMHNQSVNSMAFVSSRYTMQAVEIVSLMCACSVYIGCQALDLR  509
            +E   LA+P S          +   SM  +++R   Q VE +  + A  +    QALDLR
Sbjct  386  SENKVLAHPASVDSIPTSAGQEDHVSMGTIAARKLRQIVENLERVLAIELLAAAQALDLR  445

Query  510  VLHLTFLQRSTQQLHAL  526
               L  L   T+  +A 
Sbjct  446  RRPLK-LSPGTEAAYAA  461



Lambda      K        H        a         alpha
   0.318    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 921111216


Query= TCONS_00011675

Length=727
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459718 pfam00221, Lyase_aromatic, Aromatic amino acid lyase. ...  560     0.0  


>CDD:459718 pfam00221, Lyase_aromatic, Aromatic amino acid lyase.  This family 
includes proteins with phenylalanine ammonia-lyase, EC:4.3.1.24, 
histidine ammonia-lyase, EC:4.3.1.3, and tyrosine 
aminomutase, EC:5.4.3.6, activities.
Length=464

 Score = 560 bits (1446),  Expect = 0.0, Method: Composition-based stats.
 Identities = 184/497 (37%), Positives = 257/497 (52%), Gaps = 42/497 (8%)

Query  36   LDIAAVVAVAHHGCIPRMTMDPVVRGSIEASVRVLMDHLDKGYCVYGVNTGFGGSADSRT  95
            L +  VVAVA  G   ++ + P  R  + AS  +L + L +G  VYGVNTGFG  AD R 
Sbjct  1    LTLEDVVAVARGG--AKVELSPEARERVAASRALLEEILAEGRPVYGVNTGFGALADVRI  58

Query  96   DRVVALQSGLLQLLQAGVLVRSDKGLQCQQQQSLESHA------MPASWVRGTMLVRCNS  149
                                  +   Q Q+   + SHA      +P   VR  ML+R NS
Sbjct  59   PP--------------------EDLEQLQRNL-IRSHAAGVGEPLPEEVVRAMMLLRLNS  97

Query  150  NARGHSAVSLPVIESLLRLIENHITPVVPLRGSISASGDLMPLSYIAGAIEGSPDVYVQV  209
             ARG+S V   V+E L+ L+   ITPVVP RGS+ ASGDL PL++IA A+ G  +VY + 
Sbjct  98   LARGYSGVRPEVVERLVALLNAGITPVVPERGSVGASGDLAPLAHIALALIGEGEVYYK-  156

Query  210  QDADKTRIMNSRDALLSTGLEAQTLGPKEGLGLVNGTSASAALASLVMYEAHQLAVLVQA  269
                    M + +AL + GLE   LGPKEGL L+NGT+   ALA+L +++A +L  L   
Sbjct  157  -----GERMPAAEALAAAGLEPLELGPKEGLALINGTAVMTALAALALHDAERLLRLADV  211

Query  270  LSAVTVEALMGNAESFHPFISAIRPHDGQIECARNVLSFLQGSQLAQNVERDLKDRNRPG  329
             +A+++EAL G+ + F P I A+RPH GQIE A N+ + L GS+L +         +   
Sbjct  212  AAALSLEALRGSDDPFDPRIHALRPHPGQIEVAANLRALLAGSELIR------SHPDCAR  265

Query  330  LIQDRYALRTVPQWIGPQLEDLLLAHHQVTVELNSSCDNPLVDMQSGDIFYGGNFQAVSI  389
            L+QD Y+LR  PQ  G   + L  A   + +ELNS  DNPLVD + G++  GGNF    +
Sbjct  266  LVQDPYSLRCAPQVHGAARDALAYAREVLEIELNSVTDNPLVDFEDGEVLSGGNFHGQPV  325

Query  390  TSAMEKTRTCLQMFGRLLFAQATELIDPNLNNGLPTNLVADDPSLSFTMKGVDISMASYM  449
              AM+     L   G L   +   L++P LNNGLP  L ADDP L+        + A+ +
Sbjct  326  ALAMDFLAIALAELGNLSERRIARLVNPALNNGLPPFLAADDPGLNSGFMIAQYTAAALV  385

Query  450  AELAYLANPVSSHVQTAEMHNQSVNSMAFVSSRYTMQAVEIVSLMCACSVYIGCQALDLR  509
            +E   LA+P S          +   SM  +++R   Q VE +  + A  +    QALDLR
Sbjct  386  SENKVLAHPASVDSIPTSAGQEDHVSMGTIAARKLRQIVENLERVLAIELLAAAQALDLR  445

Query  510  VLHLTFLQRSTQQLHAL  526
               L  L   T+  +A 
Sbjct  446  RRPLK-LSPGTEAAYAA  461



Lambda      K        H        a         alpha
   0.318    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0728    0.140     1.90     42.6     43.6 

Effective search space used: 921111216


Query= TCONS_00017837

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00017838

Length=727
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459718 pfam00221, Lyase_aromatic, Aromatic amino acid lyase. ...  560     0.0  


>CDD:459718 pfam00221, Lyase_aromatic, Aromatic amino acid lyase.  This family 
includes proteins with phenylalanine ammonia-lyase, EC:4.3.1.24, 
histidine ammonia-lyase, EC:4.3.1.3, and tyrosine 
aminomutase, EC:5.4.3.6, activities.
Length=464

 Score = 560 bits (1446),  Expect = 0.0, Method: Composition-based stats.
 Identities = 184/497 (37%), Positives = 257/497 (52%), Gaps = 42/497 (8%)

Query  36   LDIAAVVAVAHHGCIPRMTMDPVVRGSIEASVRVLMDHLDKGYCVYGVNTGFGGSADSRT  95
            L +  VVAVA  G   ++ + P  R  + AS  +L + L +G  VYGVNTGFG  AD R 
Sbjct  1    LTLEDVVAVARGG--AKVELSPEARERVAASRALLEEILAEGRPVYGVNTGFGALADVRI  58

Query  96   DRVVALQSGLLQLLQAGVLVRSDKGLQCQQQQSLESHA------MPASWVRGTMLVRCNS  149
                                  +   Q Q+   + SHA      +P   VR  ML+R NS
Sbjct  59   PP--------------------EDLEQLQRNL-IRSHAAGVGEPLPEEVVRAMMLLRLNS  97

Query  150  NARGHSAVSLPVIESLLRLIENHITPVVPLRGSISASGDLMPLSYIAGAIEGSPDVYVQV  209
             ARG+S V   V+E L+ L+   ITPVVP RGS+ ASGDL PL++IA A+ G  +VY + 
Sbjct  98   LARGYSGVRPEVVERLVALLNAGITPVVPERGSVGASGDLAPLAHIALALIGEGEVYYK-  156

Query  210  QDADKTRIMNSRDALLSTGLEAQTLGPKEGLGLVNGTSASAALASLVMYEAHQLAVLVQA  269
                    M + +AL + GLE   LGPKEGL L+NGT+   ALA+L +++A +L  L   
Sbjct  157  -----GERMPAAEALAAAGLEPLELGPKEGLALINGTAVMTALAALALHDAERLLRLADV  211

Query  270  LSAVTVEALMGNAESFHPFISAIRPHDGQIECARNVLSFLQGSQLAQNVERDLKDRNRPG  329
             +A+++EAL G+ + F P I A+RPH GQIE A N+ + L GS+L +         +   
Sbjct  212  AAALSLEALRGSDDPFDPRIHALRPHPGQIEVAANLRALLAGSELIR------SHPDCAR  265

Query  330  LIQDRYALRTVPQWIGPQLEDLLLAHHQVTVELNSSCDNPLVDMQSGDIFYGGNFQAVSI  389
            L+QD Y+LR  PQ  G   + L  A   + +ELNS  DNPLVD + G++  GGNF    +
Sbjct  266  LVQDPYSLRCAPQVHGAARDALAYAREVLEIELNSVTDNPLVDFEDGEVLSGGNFHGQPV  325

Query  390  TSAMEKTRTCLQMFGRLLFAQATELIDPNLNNGLPTNLVADDPSLSFTMKGVDISMASYM  449
              AM+     L   G L   +   L++P LNNGLP  L ADDP L+        + A+ +
Sbjct  326  ALAMDFLAIALAELGNLSERRIARLVNPALNNGLPPFLAADDPGLNSGFMIAQYTAAALV  385

Query  450  AELAYLANPVSSHVQTAEMHNQSVNSMAFVSSRYTMQAVEIVSLMCACSVYIGCQALDLR  509
            +E   LA+P S          +   SM  +++R   Q VE +  + A  +    QALDLR
Sbjct  386  SENKVLAHPASVDSIPTSAGQEDHVSMGTIAARKLRQIVENLERVLAIELLAAAQALDLR  445

Query  510  VLHLTFLQRSTQQLHAL  526
               L  L   T+  +A 
Sbjct  446  RRPLK-LSPGTEAAYAA  461



Lambda      K        H        a         alpha
   0.318    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 921111216


Query= TCONS_00017839

Length=1861


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2355027564


Query= TCONS_00011676

Length=1547


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1964880976


Query= TCONS_00011677

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425964 pfam00962, A_deaminase, Adenosine/AMP deaminase            283     3e-95


>CDD:425964 pfam00962, A_deaminase, Adenosine/AMP deaminase.  
Length=330

 Score = 283 bits (727),  Expect = 3e-95, Method: Composition-based stats.
 Identities = 122/314 (39%), Positives = 175/314 (56%), Gaps = 11/314 (4%)

Query  14   PKCEHHVHLEGCVTPELIFQLAEKNNIQLPNPATHPAYASVEALRARYAEFTSLNDFLDF  73
            PK E H+HL+G + P+ + +LA++  I LP  A  P   ++E L  +Y +   L DFLD 
Sbjct  1    PKAELHLHLDGSLRPDTLLELAKRYGIILP--ADFPE--ALEPLFRKYKKERDLQDFLDK  56

Query  74   YFHGMSVLHHQSDFEELAWAYFQKAHADGVHHAEVFFDPQVHQARGIDYETVVSGFTAGC  133
            Y  G++VL    D   LA+ Y +    DGV +AEV +DPQ H +RG+  +TVV       
Sbjct  57   YDIGVAVLRSPEDIRRLAFEYAEDVAKDGVVYAEVRYDPQSHASRGLSPDTVVDAVLDAV  116

Query  134  KRAERELGLSTRLILCFVRHLPVDSATKLYELALASNHFESRVVHGLGWSSSEVGPPKDM  193
              AERE G++ RLI+C +RH   + + ++ ELA     +  + +   G +  E G P  +
Sbjct  117  DAAEREFGITVRLIVCAMRHEHPECSREIAELAP---RYRDQGIVAFGLAGDEKGFPPSL  173

Query  194  FR---EIYASASGKGIRLTAHAGEEGDPTYISTAL-ELGARRIDHGIRLVEDPELMERVA  249
            FR   E +A A   G+ LT HAGE G P  +  AL +LGA RI HG+R  EDP L++R+A
Sbjct  174  FRDHVEAFARARDAGLHLTVHAGEAGGPQSVWEALDDLGAERIGHGVRSAEDPRLLDRLA  233

Query  250  REGIMLTVCPLSNVRLRCVQSVEQVPIRKFLDAGVKFSINSDDPAYFGGYILDNYCAVQE  309
               I L +CP SNV+   V S+ + P++ FL AGV  S+N+DDP  FG  +LD Y   + 
Sbjct  234  DRQIPLEICPTSNVQTGAVASLAEHPLKTFLRAGVPVSLNTDDPLMFGSDLLDEYQVAKR  293

Query  310  AFQLSILEWRVIVK  323
            A      E   + K
Sbjct  294  APGFDEEELARLAK  307



Lambda      K        H        a         alpha
   0.323    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00011678

Length=1547


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1964880976


Query= TCONS_00017840

Length=1861


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2355027564


Query= TCONS_00011679

Length=2115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395093 pfam00145, DNA_methylase, C-5 cytosine-specific DNA me...  74.7    2e-14


>CDD:395093 pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase. 
 
Length=324

 Score = 74.7 bits (184),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 63/160 (39%), Gaps = 26/160 (16%)

Query  112  FRHLFSAEIVPFKQAYIERNFHPRFLFRDVKQLKNRFAQTAYGSLEKIPKNPDLVIAGFS  171
            F  + + EI        E NF P+    D+  +  +           IP + D++  GF 
Sbjct  22   FECVAANEIDKSAAKTYEANF-PKVPIGDITLIDIK----------DIP-DIDILTGGFP  69

Query  172  CVDFS--GLNNNRKTLDELGESGGTFWGIIRYAIAYRPRIVILENVK-------TAPWEK  222
            C DFS  G              G  F+ IIR     +P+  +LENVK             
Sbjct  70   CQDFSIAGKQK-----GFEDTRGTLFFEIIRIIKEKKPKAFLLENVKGLLSHDNGNTLNV  124

Query  223  IAEHWNEINYLAVHKSVDTKAYYLPQTRERGYMFCIDRNL  262
            I E   E+ Y    K ++   Y +PQ RER ++  I ++L
Sbjct  125  ILETLEELGYHVSWKVLNASDYGVPQNRERVFIVGIRKDL  164



Lambda      K        H        a         alpha
   0.319    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2653819604


Query= TCONS_00011680

Length=1647


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 2100577176


Query= TCONS_00011681

Length=1647


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2100577176


Query= TCONS_00017842

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425964 pfam00962, A_deaminase, Adenosine/AMP deaminase            285     2e-95


>CDD:425964 pfam00962, A_deaminase, Adenosine/AMP deaminase.  
Length=330

 Score = 285 bits (731),  Expect = 2e-95, Method: Composition-based stats.
 Identities = 121/310 (39%), Positives = 173/310 (56%), Gaps = 11/310 (4%)

Query  14   PKCEHHVHLEGCVTPELIFQLAEKNNIQLPNPATHPAYASVEALRARYAEFTSLNDFLDF  73
            PK E H+HL+G + P+ + +LA++  I LP  A  P   ++E L  +Y +   L DFLD 
Sbjct  1    PKAELHLHLDGSLRPDTLLELAKRYGIILP--ADFPE--ALEPLFRKYKKERDLQDFLDK  56

Query  74   YFHGMSVLHHQSDFEELAWAYFQKAHADGVHHAEVFFDPQVHQARGIDYETVVSGFTAGC  133
            Y  G++VL    D   LA+ Y +    DGV +AEV +DPQ H +RG+  +TVV       
Sbjct  57   YDIGVAVLRSPEDIRRLAFEYAEDVAKDGVVYAEVRYDPQSHASRGLSPDTVVDAVLDAV  116

Query  134  KRAERELGLSTRLILCFVRHLPVDSATKLYELALASNHFESRVVHGLGWSSSEVGPPKDM  193
              AERE G++ RLI+C +RH   + + ++ ELA     +  + +   G +  E G P  +
Sbjct  117  DAAEREFGITVRLIVCAMRHEHPECSREIAELAP---RYRDQGIVAFGLAGDEKGFPPSL  173

Query  194  FR---EIYASASGKGIRLTAHAGEEGDPTYISTAL-ELGARRIDHGIRLVEDPELMERVA  249
            FR   E +A A   G+ LT HAGE G P  +  AL +LGA RI HG+R  EDP L++R+A
Sbjct  174  FRDHVEAFARARDAGLHLTVHAGEAGGPQSVWEALDDLGAERIGHGVRSAEDPRLLDRLA  233

Query  250  REGIMLTVCPLSNVRLRCVQSVEQVPIRKFLDAGVKFSINSDDPAYFGGYILDNYCAVQE  309
               I L +CP SNV+   V S+ + P++ FL AGV  S+N+DDP  FG  +LD Y   + 
Sbjct  234  DRQIPLEICPTSNVQTGAVASLAEHPLKTFLRAGVPVSLNTDDPLMFGSDLLDEYQVAKR  293

Query  310  AFQLSILEWR  319
            A      E  
Sbjct  294  APGFDEEELA  303



Lambda      K        H        a         alpha
   0.324    0.139    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00017843

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00011682

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00017844

Length=551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432191 pfam11923, DUF3441, Domain of unknown function (DUF344...  155     3e-46
CDD:428576 pfam05670, DUF814, Domain of unknown function (DUF814)...  116     7e-32


>CDD:432191 pfam11923, DUF3441, Domain of unknown function (DUF3441).  This 
presumed domain is functionally uncharacterized. This domain 
is found in archaea and eukaryotes. This domain is typically 
between 104 to 119 amino acids in length. This domain is 
found associated with pfam05833, pfam05670. This domain has 
two conserved residues (P and G) that may be functionally 
important.
Length=104

 Score = 155 bits (395),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 54/113 (48%), Positives = 71/113 (63%), Gaps = 12/113 (11%)

Query  409  DLSWIPALIGTPRPEDEILAAIPICAPWAALVRYKYRVKLQPGTVKKGKAVKEILGRWVA  468
             L+ + +L GTP P+DE+L AIP+CAPWAAL +YKY+VKLQPGT KKGKAVKEIL  ++ 
Sbjct  4    YLTLLDSLTGTPLPDDELLEAIPVCAPWAALQKYKYKVKLQPGTTKKGKAVKEILEYFLK  63

Query  469  ETTTGKVKKEQAEEAGISIADAEKLRAREGELFKAWRDTEIINTVPVPKVRIM  521
                                D E+   RE EL KA +D E++N +PV KV++ 
Sbjct  64   RKVDESS------------RDKERDWPREKELIKALKDEELVNVIPVGKVKVS  104


>CDD:428576 pfam05670, DUF814, Domain of unknown function (DUF814).  This 
domain occurs in proteins that have been annotated as Fibronectin/fibrinogen 
binding protein by similarity. This annotation 
comes from Bacillus subtilis YloA, where the N-terminal 
region is involved in this activity. Hence the activity of 
this C-terminal domain is unknown. This domain contains a conserved 
motif D/E-X-W/Y-X-H that may be functionally important.
Length=111

 Score = 116 bits (294),  Expect = 7e-32, Method: Composition-based stats.
 Identities = 37/95 (39%), Positives = 56/95 (59%), Gaps = 4/95 (4%)

Query  1    MQSELLYRRHLKKGDIFVHADLEGARPMIVKNRPGTPDAPIPPSTLSQAGNLCVATSSAW  60
             ++ELL +++L++GD++ HAD  G+  + +K   G     IPP TL +A  L  A S AW
Sbjct  20   QENELLIKKYLEEGDLWFHADKHGSAHVYLKLPEG---EDIPPETLEEAAQLAKANSIAW  76

Query  61   ESK-AVMAAWWVNANQVTKTTTGGLLPTGEFEIKG  94
             +K   ++ W+  A+QV+KT   G L TG F  KG
Sbjct  77   GNKQNNISVWYTPASQVSKTGPSGYLDTGSFMFKG  111



Lambda      K        H        a         alpha
   0.306    0.123    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685942452


Query= TCONS_00011683

Length=551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432191 pfam11923, DUF3441, Domain of unknown function (DUF344...  155     3e-46
CDD:428576 pfam05670, DUF814, Domain of unknown function (DUF814)...  116     7e-32


>CDD:432191 pfam11923, DUF3441, Domain of unknown function (DUF3441).  This 
presumed domain is functionally uncharacterized. This domain 
is found in archaea and eukaryotes. This domain is typically 
between 104 to 119 amino acids in length. This domain is 
found associated with pfam05833, pfam05670. This domain has 
two conserved residues (P and G) that may be functionally 
important.
Length=104

 Score = 155 bits (395),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 54/113 (48%), Positives = 71/113 (63%), Gaps = 12/113 (11%)

Query  409  DLSWIPALIGTPRPEDEILAAIPICAPWAALVRYKYRVKLQPGTVKKGKAVKEILGRWVA  468
             L+ + +L GTP P+DE+L AIP+CAPWAAL +YKY+VKLQPGT KKGKAVKEIL  ++ 
Sbjct  4    YLTLLDSLTGTPLPDDELLEAIPVCAPWAALQKYKYKVKLQPGTTKKGKAVKEILEYFLK  63

Query  469  ETTTGKVKKEQAEEAGISIADAEKLRAREGELFKAWRDTEIINTVPVPKVRIM  521
                                D E+   RE EL KA +D E++N +PV KV++ 
Sbjct  64   RKVDESS------------RDKERDWPREKELIKALKDEELVNVIPVGKVKVS  104


>CDD:428576 pfam05670, DUF814, Domain of unknown function (DUF814).  This 
domain occurs in proteins that have been annotated as Fibronectin/fibrinogen 
binding protein by similarity. This annotation 
comes from Bacillus subtilis YloA, where the N-terminal 
region is involved in this activity. Hence the activity of 
this C-terminal domain is unknown. This domain contains a conserved 
motif D/E-X-W/Y-X-H that may be functionally important.
Length=111

 Score = 116 bits (294),  Expect = 7e-32, Method: Composition-based stats.
 Identities = 37/95 (39%), Positives = 56/95 (59%), Gaps = 4/95 (4%)

Query  1    MQSELLYRRHLKKGDIFVHADLEGARPMIVKNRPGTPDAPIPPSTLSQAGNLCVATSSAW  60
             ++ELL +++L++GD++ HAD  G+  + +K   G     IPP TL +A  L  A S AW
Sbjct  20   QENELLIKKYLEEGDLWFHADKHGSAHVYLKLPEG---EDIPPETLEEAAQLAKANSIAW  76

Query  61   ESK-AVMAAWWVNANQVTKTTTGGLLPTGEFEIKG  94
             +K   ++ W+  A+QV+KT   G L TG F  KG
Sbjct  77   GNKQNNISVWYTPASQVSKTGPSGYLDTGSFMFKG  111



Lambda      K        H        a         alpha
   0.306    0.123    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685942452


Query= TCONS_00017845

Length=329
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425964 pfam00962, A_deaminase, Adenosine/AMP deaminase            287     2e-96


>CDD:425964 pfam00962, A_deaminase, Adenosine/AMP deaminase.  
Length=330

 Score = 287 bits (735),  Expect = 2e-96, Method: Composition-based stats.
 Identities = 123/319 (39%), Positives = 177/319 (55%), Gaps = 11/319 (3%)

Query  14   PKCEHHVHLEGCVTPELIFQLAEKNNIQLPNPATHPAYASVEALRARYAEFTSLNDFLDF  73
            PK E H+HL+G + P+ + +LA++  I LP  A  P   ++E L  +Y +   L DFLD 
Sbjct  1    PKAELHLHLDGSLRPDTLLELAKRYGIILP--ADFPE--ALEPLFRKYKKERDLQDFLDK  56

Query  74   YFHGMSVLHHQSDFEELAWAYFQKAHADGVHHAEVFFDPQVHQARGIDYETVVSGFTAGC  133
            Y  G++VL    D   LA+ Y +    DGV +AEV +DPQ H +RG+  +TVV       
Sbjct  57   YDIGVAVLRSPEDIRRLAFEYAEDVAKDGVVYAEVRYDPQSHASRGLSPDTVVDAVLDAV  116

Query  134  KRAERELGLSTRLILCFVRHLPVDSATKLYELALASNHFESRVVHGLGWSSSEVGPPKDM  193
              AERE G++ RLI+C +RH   + + ++ ELA     +  + +   G +  E G P  +
Sbjct  117  DAAEREFGITVRLIVCAMRHEHPECSREIAELAP---RYRDQGIVAFGLAGDEKGFPPSL  173

Query  194  FR---EIYASASGKGIRLTAHAGEEGDPTYISTAL-ELGARRIDHGIRLVEDPELMERVA  249
            FR   E +A A   G+ LT HAGE G P  +  AL +LGA RI HG+R  EDP L++R+A
Sbjct  174  FRDHVEAFARARDAGLHLTVHAGEAGGPQSVWEALDDLGAERIGHGVRSAEDPRLLDRLA  233

Query  250  REGIMLTVCPLSNVRLRCVQSVEQVPIRKFLDAGVKFSINSDDPAYFGGYILDNYCAVQE  309
               I L +CP SNV+   V S+ + P++ FL AGV  S+N+DDP  FG  +LD Y   + 
Sbjct  234  DRQIPLEICPTSNVQTGAVASLAEHPLKTFLRAGVPVSLNTDDPLMFGSDLLDEYQVAKR  293

Query  310  AFQLSILEWRVIGLVAVEM  328
            A      E   +   AV+ 
Sbjct  294  APGFDEEELARLAKNAVKG  312



Lambda      K        H        a         alpha
   0.323    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 385413556


Query= TCONS_00017847

Length=106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e...  93.4    5e-27


>CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family.  This family includes: Ribosomal L7A from metazoa, 
Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein 
HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, 
Ribosomal protein L30 from eukaryotes and archaebacteria. 
Gadd45 and MyD118.
Length=95

 Score = 93.4 bits (233),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 49/97 (51%), Gaps = 4/97 (4%)

Query  10   DTISSRLALVMKSGKVTLGYKSTIKTLRSGKAKLVLIAANAPPLRKSEL-EYYAMLAKTP  68
            D I   L   +K+GK+ LG K   K L  G+AKLV+IA +  P  K +L        +  
Sbjct  1    DAIYEVLKKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDPEEKVKLIPALCK--EKN  58

Query  69   VHHFSGNN-VELGTACGKLFRCSTMAILDAGDSDILS  104
            V +    +  ELG ACGK    S +AI D GDS IL 
Sbjct  59   VPYVKVPSKKELGEACGKKRPVSALAIKDEGDSKILV  95



Lambda      K        H        a         alpha
   0.315    0.128    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00017848

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      151     9e-48


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 151 bits (385),  Expect = 9e-48, Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query  12   CKNKPYPKS--RFNRGVPDPKIRIFDLGRKKASVDDFPLCVHMVSNEYEQLSSEALEAAR  69
             K   Y KS  R+ RGVP  K    D G              +V+ E  Q+++  LEAAR
Sbjct  1    PKRTKYRKSRKRYIRGVP-TKGTTLDFGD-----------YGLVALEGGQITARQLEAAR  48

Query  70   ICANKYLVKITGKEGFHLRVRVHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARV  129
            I  N+YL K     G  L +RV P   +         G DR+  G     GKP+G VARV
Sbjct  49   IAINRYLKKTR---GGKLWIRVFPDKPVTKK-----PGEDRMGKGK----GKPEGWVARV  96

Query  130  NIGQIILSVRTRDSNRAAAIEALRRAMYKFPGRQKII  166
              G+I+  ++    +   A EALR A +K PG+ KI+
Sbjct  97   KPGRILFEIKG-GVHEEVAKEALRLAAHKLPGKTKIV  132



Lambda      K        H        a         alpha
   0.324    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00011685

Length=86
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e...  62.6    4e-15


>CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family.  This family includes: Ribosomal L7A from metazoa, 
Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein 
HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, 
Ribosomal protein L30 from eukaryotes and archaebacteria. 
Gadd45 and MyD118.
Length=95

 Score = 62.6 bits (153),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 33/81 (41%), Gaps = 9/81 (11%)

Query  10  DTISSRLALVMKSGKVTLGYKSTIKTLRSGKAKLVLIAANAPPLRKSEL-EYYAMLAKTP  68
           D I   L   +K+GK+ LG K   K L  G+AKLV+IA +  P  K +L        +  
Sbjct  1   DAIYEVLKKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDPEEKVKLIPALCK--EKN  58

Query  69  VHHFSGNN------VSHKCFC  83
           V +    +         K   
Sbjct  59  VPYVKVPSKKELGEACGKKRP  79



Lambda      K        H        a         alpha
   0.317    0.129    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00017849

Length=89
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e...  62.6    4e-15


>CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family.  This family includes: Ribosomal L7A from metazoa, 
Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein 
HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, 
Ribosomal protein L30 from eukaryotes and archaebacteria. 
Gadd45 and MyD118.
Length=95

 Score = 62.6 bits (153),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 8/84 (10%)

Query  10  DTISSRLALVMKSGKVTLGYKSTIKTLRSGKAKLVLIAANAPPLRKSEL-EYYAMLAKTP  68
           D I   L   +K+GK+ LG K   K L  G+AKLV+IA +  P  K +L        +  
Sbjct  1   DAIYEVLKKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDPEEKVKLIPALCK--EKN  58

Query  69  VHHFSGNNVSHK---CACGKLFRC  89
           V +      S K    ACGK    
Sbjct  59  VPYVKVP--SKKELGEACGKKRPV  80



Lambda      K        H        a         alpha
   0.317    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00017850

Length=87
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e...  68.8    1e-17


>CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family.  This family includes: Ribosomal L7A from metazoa, 
Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein 
HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, 
Ribosomal protein L30 from eukaryotes and archaebacteria. 
Gadd45 and MyD118.
Length=95

 Score = 68.8 bits (169),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 27/80 (34%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query  10  DTISSRLALVMKSGKVTLGYKSTIKTLRSGKAKLVLIAANAPPLRKSEL-EYYAMLAKTP  68
           D I   L   +K+GK+ LG K   K L  G+AKLV+IA +  P  K +L        +  
Sbjct  1   DAIYEVLKKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDPEEKVKLIPALCK--EKN  58

Query  69  VHHFSGNNVSH-GTACGKLF  87
           V +    +    G ACGK  
Sbjct  59  VPYVKVPSKKELGEACGKKR  78



Lambda      K        H        a         alpha
   0.314    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00011687

Length=91
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e...  66.1    2e-16


>CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family.  This family includes: Ribosomal L7A from metazoa, 
Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein 
HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, 
Ribosomal protein L30 from eukaryotes and archaebacteria. 
Gadd45 and MyD118.
Length=95

 Score = 66.1 bits (162),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 29/86 (34%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query  10  DTISSRLALVMKSGKVTLGYKSTIKTLRSGKAKLVLIAANAPPLRKSEL-EYYAMLAKTP  68
           D I   L   +K+GK+ LG K   K L  G+AKLV+IA +  P  K +L        +  
Sbjct  1   DAIYEVLKKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDPEEKVKLIPALCK--EKN  58

Query  69  VHHFSGNNVSHK---SACGKLFRCST  91
           V +      S K    ACGK    S 
Sbjct  59  VPYVKVP--SKKELGEACGKKRPVSA  82



Lambda      K        H        a         alpha
   0.315    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00011686

Length=91
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e...  78.0    4e-21


>CDD:426153 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family.  This family includes: Ribosomal L7A from metazoa, 
Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein 
HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, 
Ribosomal protein L30 from eukaryotes and archaebacteria. 
Gadd45 and MyD118.
Length=95

 Score = 78.0 bits (193),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 30/84 (36%), Positives = 40/84 (48%), Gaps = 4/84 (5%)

Query  10  DTISSRLALVMKSGKVTLGYKSTIKTLRSGKAKLVLIAANAPPLRKSEL-EYYAMLAKTP  68
           D I   L   +K+GK+ LG K   K L  G+AKLV+IA +  P  K +L        +  
Sbjct  1   DAIYEVLKKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDPEEKVKLIPALCK--EKN  58

Query  69  VHHFSGNN-VELGTACGKLFRCST  91
           V +    +  ELG ACGK    S 
Sbjct  59  VPYVKVPSKKELGEACGKKRPVSA  82



Lambda      K        H        a         alpha
   0.315    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00011688

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      151     9e-48


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 151 bits (385),  Expect = 9e-48, Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query  12   CKNKPYPKS--RFNRGVPDPKIRIFDLGRKKASVDDFPLCVHMVSNEYEQLSSEALEAAR  69
             K   Y KS  R+ RGVP  K    D G              +V+ E  Q+++  LEAAR
Sbjct  1    PKRTKYRKSRKRYIRGVP-TKGTTLDFGD-----------YGLVALEGGQITARQLEAAR  48

Query  70   ICANKYLVKITGKEGFHLRVRVHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARV  129
            I  N+YL K     G  L +RV P   +         G DR+  G     GKP+G VARV
Sbjct  49   IAINRYLKKTR---GGKLWIRVFPDKPVTKK-----PGEDRMGKGK----GKPEGWVARV  96

Query  130  NIGQIILSVRTRDSNRAAAIEALRRAMYKFPGRQKII  166
              G+I+  ++    +   A EALR A +K PG+ KI+
Sbjct  97   KPGRILFEIKG-GVHEEVAKEALRLAAHKLPGKTKIV  132



Lambda      K        H        a         alpha
   0.324    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00011689

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      75.2    4e-19


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 75.2 bits (186),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 25/61 (41%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query  5    AGADRLQTGMRGAFGKPQGTVARVNIGQIILSVRTRDSNRAAAIEALRRAMYKFPGRQKI  64
             G DR+  G     GKP+G VARV  G+I+  ++    +   A EALR A +K PG+ KI
Sbjct  77   PGEDRMGKGK----GKPEGWVARVKPGRILFEIKG-GVHEEVAKEALRLAAHKLPGKTKI  131

Query  65   I  65
            +
Sbjct  132  V  132



Lambda      K        H        a         alpha
   0.322    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00011690

Length=132
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      86.7    2e-23


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 86.7 bits (216),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 30/92 (33%), Positives = 40/92 (43%), Gaps = 17/92 (18%)

Query  12   CKNKPYPKS--RFNRGVPDPKIRIFDLGRKKASVDDFPLCVHMVSNEYEQLSSEALEAAR  69
             K   Y KS  R+ RGVP  K    D G              +V+ E  Q+++  LEAAR
Sbjct  1    PKRTKYRKSRKRYIRGVP-TKGTTLDFGD-----------YGLVALEGGQITARQLEAAR  48

Query  70   ICANKYLVKITGKEGFHLRVRVHPFHVIRNEG  101
            I  N+YL K     G  L +RV P   +  + 
Sbjct  49   IAINRYLKKTR---GGKLWIRVFPDKPVTKKP  77



Lambda      K        H        a         alpha
   0.324    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00011691

Length=716
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  95.8    3e-24


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 95.8 bits (239),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 39/106 (37%), Positives = 59/106 (56%), Gaps = 15/106 (14%)

Query  580  ALLQLLSIDALEESGKISSIGLHIAKLPLTPTLGRVLLAAAEHGEGCLLDVIDIISCLSV  639
            AL  L  + AL+E G+++ +G  +A+LPL P L ++LLAAAE   GCL +V+ I++ LSV
Sbjct  1    ALELLYYLGALDEDGELTPLGRKMAELPLDPRLAKMLLAAAEL--GCLDEVLTIVAALSV  58

Query  640  ENIFLNTTSEEKKEEAEKARRDLYRR-------------EGDHLTM  672
             + F+     + +  A+ ARR                  EGDHLT+
Sbjct  59   RDPFVQPNFLDPRSAAKAARRRRRAADEKARAKFARLDLEGDHLTL  104



Lambda      K        H        a         alpha
   0.315    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905104544


Query= TCONS_00017851

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      67.1    3e-16


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 67.1 bits (165),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 31/69 (45%), Gaps = 14/69 (20%)

Query  12  CKNKPYPKS--RFNRGVPDPKIRIFDLGRKKASVDDFPLCVHMVSNEYEQLSSEALEAAR  69
            K   Y KS  R+ RGVP  K    D G              +V+ E  Q+++  LEAAR
Sbjct  1   PKRTKYRKSRKRYIRGVP-TKGTTLDFGD-----------YGLVALEGGQITARQLEAAR  48

Query  70  ICANKYVDP  78
           I  N+Y+  
Sbjct  49  IAINRYLKK  57



Lambda      K        H        a         alpha
   0.320    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00017852

Length=220


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00011692

Length=716
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  95.8    3e-24


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 95.8 bits (239),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 39/106 (37%), Positives = 59/106 (56%), Gaps = 15/106 (14%)

Query  580  ALLQLLSIDALEESGKISSIGLHIAKLPLTPTLGRVLLAAAEHGEGCLLDVIDIISCLSV  639
            AL  L  + AL+E G+++ +G  +A+LPL P L ++LLAAAE   GCL +V+ I++ LSV
Sbjct  1    ALELLYYLGALDEDGELTPLGRKMAELPLDPRLAKMLLAAAEL--GCLDEVLTIVAALSV  58

Query  640  ENIFLNTTSEEKKEEAEKARRDLYRR-------------EGDHLTM  672
             + F+     + +  A+ ARR                  EGDHLT+
Sbjct  59   RDPFVQPNFLDPRSAAKAARRRRRAADEKARAKFARLDLEGDHLTL  104



Lambda      K        H        a         alpha
   0.315    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905104544


Query= TCONS_00011693

Length=716
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  95.8    3e-24


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 95.8 bits (239),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 39/106 (37%), Positives = 59/106 (56%), Gaps = 15/106 (14%)

Query  580  ALLQLLSIDALEESGKISSIGLHIAKLPLTPTLGRVLLAAAEHGEGCLLDVIDIISCLSV  639
            AL  L  + AL+E G+++ +G  +A+LPL P L ++LLAAAE   GCL +V+ I++ LSV
Sbjct  1    ALELLYYLGALDEDGELTPLGRKMAELPLDPRLAKMLLAAAEL--GCLDEVLTIVAALSV  58

Query  640  ENIFLNTTSEEKKEEAEKARRDLYRR-------------EGDHLTM  672
             + F+     + +  A+ ARR                  EGDHLT+
Sbjct  59   RDPFVQPNFLDPRSAAKAARRRRRAADEKARAKFARLDLEGDHLTL  104



Lambda      K        H        a         alpha
   0.315    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905104544


Query= TCONS_00011694

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        91.6    4e-23


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 91.6 bits (228),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 35/107 (33%), Positives = 54/107 (50%), Gaps = 16/107 (15%)

Query  339  DTPTFLESFLSGALSGSLAAFVTTPFDVGKTRQQVFRHMGDGGPSSLRGSVAPETLRPEQ  398
               +FL S L+G ++G++A  VT P DV KTR QV                   + + + 
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQV----------------QGGSGKSKG  44

Query  399  LSLPKFLMHIFREEGMAGLFRGWVARCLKVAPACAIMISTYELGKKM  445
              +      I++EEG+ GL++G +   L+VAPA AI   TYE  K++
Sbjct  45   RGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKRL  91


 Score = 71.5 bits (176),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 44/153 (29%), Gaps = 64/153 (42%)

Query  60   GDISITQRMVSATGGSILTALLATPLDVVRVRLQSQSSVQNASPYTSHTTQTLKHLPPNL  119
             ++S    +++      +   +  PLDVV+ RLQ Q     +                  
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGR---------------  45

Query  120  GVTACCREVFWFGQDPQVCMVGPGTGTIGNSAPALADCAVEETQRRTFTSTLDGLRKIAR  179
                                                               LD  +KI +
Sbjct  46   -------------------------------------------------GILDCFKKIYK  56

Query  180  NEGTLALWRGLSPTLMMSIPANVIYFAGYDWLR  212
             EG   L++GL P L+   PA  IYF  Y+ L+
Sbjct  57   EEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLK  89


 Score = 70.0 bits (172),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 0/90 (0%)

Query  226  AYAPLVAGSVARIAAASAISPIEMFRTRLQATPGTGAGHFKATLEDLHQMTQVHGYRALW  285
              A L+AG +A   A +   P+++ +TRLQ   G+G    +  L+   ++ +  G R L+
Sbjct  5    FLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLY  64

Query  286  RGLTLTMWRDVPFSGLYWWGYEECKRYLLD  315
            +GL   + R  P + +Y+  YE  KR LL 
Sbjct  65   KGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94



Lambda      K        H        a         alpha
   0.320    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 573605296


Query= TCONS_00011695

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        90.4    7e-23


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 90.4 bits (225),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 35/107 (33%), Positives = 54/107 (50%), Gaps = 16/107 (15%)

Query  299  DTPTFLESFLSGALSGSLAAFVTTPFDVGKTRQQVFRHMGDGGPSSLRGSVAPETLRPEQ  358
               +FL S L+G ++G++A  VT P DV KTR QV                   + + + 
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQV----------------QGGSGKSKG  44

Query  359  LSLPKFLMHIFREEGMAGLFRGWVARCLKVAPACAIMISTYELGKKM  405
              +      I++EEG+ GL++G +   L+VAPA AI   TYE  K++
Sbjct  45   RGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKRL  91


 Score = 70.4 bits (173),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 44/153 (29%), Gaps = 64/153 (42%)

Query  20   GDISITQRMVSATGGSILTALLATPLDVVRVRLQSQSSVQNASPYTSHTTQTLKHLPPNL  79
             ++S    +++      +   +  PLDVV+ RLQ Q     +                  
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGR---------------  45

Query  80   GVTACCREVFWFGQDPQVCMVGPGTGTIGNSAPALADCAVEETQRRTFTSTLDGLRKIAR  139
                                                               LD  +KI +
Sbjct  46   -------------------------------------------------GILDCFKKIYK  56

Query  140  NEGTLALWRGLSPTLMMSIPANVIYFAGYDWLR  172
             EG   L++GL P L+   PA  IYF  Y+ L+
Sbjct  57   EEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLK  89


 Score = 69.6 bits (171),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 0/90 (0%)

Query  186  AYAPLVAGSVARIAAASAISPIEMFRTRLQATPGTGAGHFKATLEDLHQMTQVHGYRALW  245
              A L+AG +A   A +   P+++ +TRLQ   G+G    +  L+   ++ +  G R L+
Sbjct  5    FLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLY  64

Query  246  RGLTLTMWRDVPFSGLYWWGYEECKRYLLD  275
            +GL   + R  P + +Y+  YE  KR LL 
Sbjct  65   KGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94



Lambda      K        H        a         alpha
   0.321    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00017853

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        90.0    4e-23


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 90.0 bits (224),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 35/107 (33%), Positives = 54/107 (50%), Gaps = 16/107 (15%)

Query  201  DTPTFLESFLSGALSGSLAAFVTTPFDVGKTRQQVFRHMGDGGPSSLRGSVAPETLRPEQ  260
               +FL S L+G ++G++A  VT P DV KTR QV                   + + + 
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQV----------------QGGSGKSKG  44

Query  261  LSLPKFLMHIFREEGMAGLFRGWVARCLKVAPACAIMISTYELGKKM  307
              +      I++EEG+ GL++G +   L+VAPA AI   TYE  K++
Sbjct  45   RGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKRL  91


 Score = 68.8 bits (169),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 0/90 (0%)

Query  88   AYAPLVAGSVARIAAASAISPIEMFRTRLQATPGTGAGHFKATLEDLHQMTQVHGYRALW  147
              A L+AG +A   A +   P+++ +TRLQ   G+G    +  L+   ++ +  G R L+
Sbjct  5    FLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLY  64

Query  148  RGLTLTMWRDVPFSGLYWWGYEECKRYLLD  177
            +GL   + R  P + +Y+  YE  KR LL 
Sbjct  65   KGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 62.3 bits (152),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 18/44 (41%), Positives = 25/44 (57%), Gaps = 0/44 (0%)

Query  31  STLDGLRKIARNEGTLALWRGLSPTLMMSIPANVIYFAGYDWLR  74
             LD  +KI + EG   L++GL P L+   PA  IYF  Y+ L+
Sbjct  46  GILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLK  89



Lambda      K        H        a         alpha
   0.322    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00011696

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  150     4e-41


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 150 bits (382),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 177/455 (39%), Gaps = 95/455 (21%)

Query  2    DLRRGIQAAVDAVVDYLQKNKR---DITTGEEIAQVATISANGD------THIGKLISTA  52
             +  G + A++  ++ L        +    E++ +VA  S +          + KL+  A
Sbjct  89   TIIEGYEKALEKALEILDSIISIPVEDVDREDLLKVARTSLSSKIISRESDFLAKLVVDA  148

Query  53   MERVGKE---------GVITVKEGKTIEDELEVTEGMRFDRGYTSPYFITDTKSQKV---  100
            +  + K          GV+ +  G    ++ E+ +G+  D+G   P      ++ KV   
Sbjct  149  VLAIPKNDGSFDLGNIGVVKILGGSL--EDSELVDGVVLDKGPLHPDMPKRLENAKVLLL  206

Query  101  ----EFEKP-----LILLSEKKISAVQD-----IIPALEASTTLRRPLVIIAEDIEGEAL  146
                E+EK      ++L   +++          I+  +E        +V+  + I+  AL
Sbjct  207  NCSLEYEKTETKATVVLSDAEQLERFLKAEEEQILEIVEKIIDSGVNVVVCQKGIDDLAL  266

Query  147  AVCILNKLRGQLQVAAVKAPGFGDNRKSILGDLAVLTNGTVFTDELDIKLEKLTPDMLGS  206
                 N +    +V           +K  L  LA  T     +      L+ LTPD LG+
Sbjct  267  HFLAKNGIMALRRV-----------KKRDLERLAKATGARAVSS-----LDDLTPDDLGT  310

Query  207  TGAI---TITKEDTIILNGEGSKDAIAQRCEQIRGVMADPSTSEYEKEKLQERLAKLSGG  263
             G +    I  E    + G                                      S  
Sbjct  311  AGKVEEEKIGDEKYTFIEG------------------------------------CKSPK  334

Query  264  VAVIKVGGASEVEVGEKKDRVVDALNATRAAVEE-GILPGGGTALLKAAANGLDNVKPEN  322
             A I + GA++  + E +  + DAL   + A+E+  ++PGGG   ++ A    +  K  +
Sbjct  335  AATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVS  394

Query  323  FDQQLGVSIIKNAITRPARTIVENAGLEGSVIVGKLTDEFAK-DFNRGFDSSKGEYVDMI  381
              +QL +     A+    +T+ ENAGL+   ++ +L    A  + + G D   GE +DM 
Sbjct  395  GKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEIIDMK  454

Query  382  SSGILDPLKVVRTALLDASGVASLLGTTEVAIVEA  416
             +G++DPLKV R AL  A+  AS +   +  I++A
Sbjct  455  EAGVVDPLKVKRQALKSATEAASTILRID-DIIKA  488



Lambda      K        H        a         alpha
   0.313    0.134    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0698    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00017854

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  150     4e-41


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 150 bits (382),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 177/455 (39%), Gaps = 95/455 (21%)

Query  2    DLRRGIQAAVDAVVDYLQKNKR---DITTGEEIAQVATISANGD------THIGKLISTA  52
             +  G + A++  ++ L        +    E++ +VA  S +          + KL+  A
Sbjct  89   TIIEGYEKALEKALEILDSIISIPVEDVDREDLLKVARTSLSSKIISRESDFLAKLVVDA  148

Query  53   MERVGKE---------GVITVKEGKTIEDELEVTEGMRFDRGYTSPYFITDTKSQKV---  100
            +  + K          GV+ +  G    ++ E+ +G+  D+G   P      ++ KV   
Sbjct  149  VLAIPKNDGSFDLGNIGVVKILGGSL--EDSELVDGVVLDKGPLHPDMPKRLENAKVLLL  206

Query  101  ----EFEKP-----LILLSEKKISAVQD-----IIPALEASTTLRRPLVIIAEDIEGEAL  146
                E+EK      ++L   +++          I+  +E        +V+  + I+  AL
Sbjct  207  NCSLEYEKTETKATVVLSDAEQLERFLKAEEEQILEIVEKIIDSGVNVVVCQKGIDDLAL  266

Query  147  AVCILNKLRGQLQVAAVKAPGFGDNRKSILGDLAVLTNGTVFTDELDIKLEKLTPDMLGS  206
                 N +    +V           +K  L  LA  T     +      L+ LTPD LG+
Sbjct  267  HFLAKNGIMALRRV-----------KKRDLERLAKATGARAVSS-----LDDLTPDDLGT  310

Query  207  TGAI---TITKEDTIILNGEGSKDAIAQRCEQIRGVMADPSTSEYEKEKLQERLAKLSGG  263
             G +    I  E    + G                                      S  
Sbjct  311  AGKVEEEKIGDEKYTFIEG------------------------------------CKSPK  334

Query  264  VAVIKVGGASEVEVGEKKDRVVDALNATRAAVEE-GILPGGGTALLKAAANGLDNVKPEN  322
             A I + GA++  + E +  + DAL   + A+E+  ++PGGG   ++ A    +  K  +
Sbjct  335  AATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVS  394

Query  323  FDQQLGVSIIKNAITRPARTIVENAGLEGSVIVGKLTDEFAK-DFNRGFDSSKGEYVDMI  381
              +QL +     A+    +T+ ENAGL+   ++ +L    A  + + G D   GE +DM 
Sbjct  395  GKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEIIDMK  454

Query  382  SSGILDPLKVVRTALLDASGVASLLGTTEVAIVEA  416
             +G++DPLKV R AL  A+  AS +   +  I++A
Sbjct  455  EAGVVDPLKVKRQALKSATEAASTILRID-DIIKA  488



Lambda      K        H        a         alpha
   0.313    0.134    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00017855

Length=348


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00017856

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  150     4e-41


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 150 bits (382),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 177/455 (39%), Gaps = 95/455 (21%)

Query  2    DLRRGIQAAVDAVVDYLQKNKR---DITTGEEIAQVATISANGD------THIGKLISTA  52
             +  G + A++  ++ L        +    E++ +VA  S +          + KL+  A
Sbjct  89   TIIEGYEKALEKALEILDSIISIPVEDVDREDLLKVARTSLSSKIISRESDFLAKLVVDA  148

Query  53   MERVGKE---------GVITVKEGKTIEDELEVTEGMRFDRGYTSPYFITDTKSQKV---  100
            +  + K          GV+ +  G    ++ E+ +G+  D+G   P      ++ KV   
Sbjct  149  VLAIPKNDGSFDLGNIGVVKILGGSL--EDSELVDGVVLDKGPLHPDMPKRLENAKVLLL  206

Query  101  ----EFEKP-----LILLSEKKISAVQD-----IIPALEASTTLRRPLVIIAEDIEGEAL  146
                E+EK      ++L   +++          I+  +E        +V+  + I+  AL
Sbjct  207  NCSLEYEKTETKATVVLSDAEQLERFLKAEEEQILEIVEKIIDSGVNVVVCQKGIDDLAL  266

Query  147  AVCILNKLRGQLQVAAVKAPGFGDNRKSILGDLAVLTNGTVFTDELDIKLEKLTPDMLGS  206
                 N +    +V           +K  L  LA  T     +      L+ LTPD LG+
Sbjct  267  HFLAKNGIMALRRV-----------KKRDLERLAKATGARAVSS-----LDDLTPDDLGT  310

Query  207  TGAI---TITKEDTIILNGEGSKDAIAQRCEQIRGVMADPSTSEYEKEKLQERLAKLSGG  263
             G +    I  E    + G                                      S  
Sbjct  311  AGKVEEEKIGDEKYTFIEG------------------------------------CKSPK  334

Query  264  VAVIKVGGASEVEVGEKKDRVVDALNATRAAVEE-GILPGGGTALLKAAANGLDNVKPEN  322
             A I + GA++  + E +  + DAL   + A+E+  ++PGGG   ++ A    +  K  +
Sbjct  335  AATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVS  394

Query  323  FDQQLGVSIIKNAITRPARTIVENAGLEGSVIVGKLTDEFAK-DFNRGFDSSKGEYVDMI  381
              +QL +     A+    +T+ ENAGL+   ++ +L    A  + + G D   GE +DM 
Sbjct  395  GKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEIIDMK  454

Query  382  SSGILDPLKVVRTALLDASGVASLLGTTEVAIVEA  416
             +G++DPLKV R AL  A+  AS +   +  I++A
Sbjct  455  EAGVVDPLKVKRQALKSATEAASTILRID-DIIKA  488



Lambda      K        H        a         alpha
   0.313    0.134    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00017857

Length=651


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 822932820


Query= TCONS_00011697

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  150     4e-41


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 150 bits (382),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 177/455 (39%), Gaps = 95/455 (21%)

Query  2    DLRRGIQAAVDAVVDYLQKNKR---DITTGEEIAQVATISANGD------THIGKLISTA  52
             +  G + A++  ++ L        +    E++ +VA  S +          + KL+  A
Sbjct  89   TIIEGYEKALEKALEILDSIISIPVEDVDREDLLKVARTSLSSKIISRESDFLAKLVVDA  148

Query  53   MERVGKE---------GVITVKEGKTIEDELEVTEGMRFDRGYTSPYFITDTKSQKV---  100
            +  + K          GV+ +  G    ++ E+ +G+  D+G   P      ++ KV   
Sbjct  149  VLAIPKNDGSFDLGNIGVVKILGGSL--EDSELVDGVVLDKGPLHPDMPKRLENAKVLLL  206

Query  101  ----EFEKP-----LILLSEKKISAVQD-----IIPALEASTTLRRPLVIIAEDIEGEAL  146
                E+EK      ++L   +++          I+  +E        +V+  + I+  AL
Sbjct  207  NCSLEYEKTETKATVVLSDAEQLERFLKAEEEQILEIVEKIIDSGVNVVVCQKGIDDLAL  266

Query  147  AVCILNKLRGQLQVAAVKAPGFGDNRKSILGDLAVLTNGTVFTDELDIKLEKLTPDMLGS  206
                 N +    +V           +K  L  LA  T     +      L+ LTPD LG+
Sbjct  267  HFLAKNGIMALRRV-----------KKRDLERLAKATGARAVSS-----LDDLTPDDLGT  310

Query  207  TGAI---TITKEDTIILNGEGSKDAIAQRCEQIRGVMADPSTSEYEKEKLQERLAKLSGG  263
             G +    I  E    + G                                      S  
Sbjct  311  AGKVEEEKIGDEKYTFIEG------------------------------------CKSPK  334

Query  264  VAVIKVGGASEVEVGEKKDRVVDALNATRAAVEE-GILPGGGTALLKAAANGLDNVKPEN  322
             A I + GA++  + E +  + DAL   + A+E+  ++PGGG   ++ A    +  K  +
Sbjct  335  AATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVS  394

Query  323  FDQQLGVSIIKNAITRPARTIVENAGLEGSVIVGKLTDEFAK-DFNRGFDSSKGEYVDMI  381
              +QL +     A+    +T+ ENAGL+   ++ +L    A  + + G D   GE +DM 
Sbjct  395  GKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEIIDMK  454

Query  382  SSGILDPLKVVRTALLDASGVASLLGTTEVAIVEA  416
             +G++DPLKV R AL  A+  AS +   +  I++A
Sbjct  455  EAGVVDPLKVKRQALKSATEAASTILRID-DIIKA  488



Lambda      K        H        a         alpha
   0.313    0.134    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00011698

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00017859

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  150     4e-41


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 150 bits (382),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 177/455 (39%), Gaps = 95/455 (21%)

Query  2    DLRRGIQAAVDAVVDYLQKNKR---DITTGEEIAQVATISANGD------THIGKLISTA  52
             +  G + A++  ++ L        +    E++ +VA  S +          + KL+  A
Sbjct  89   TIIEGYEKALEKALEILDSIISIPVEDVDREDLLKVARTSLSSKIISRESDFLAKLVVDA  148

Query  53   MERVGKE---------GVITVKEGKTIEDELEVTEGMRFDRGYTSPYFITDTKSQKV---  100
            +  + K          GV+ +  G    ++ E+ +G+  D+G   P      ++ KV   
Sbjct  149  VLAIPKNDGSFDLGNIGVVKILGGSL--EDSELVDGVVLDKGPLHPDMPKRLENAKVLLL  206

Query  101  ----EFEKP-----LILLSEKKISAVQD-----IIPALEASTTLRRPLVIIAEDIEGEAL  146
                E+EK      ++L   +++          I+  +E        +V+  + I+  AL
Sbjct  207  NCSLEYEKTETKATVVLSDAEQLERFLKAEEEQILEIVEKIIDSGVNVVVCQKGIDDLAL  266

Query  147  AVCILNKLRGQLQVAAVKAPGFGDNRKSILGDLAVLTNGTVFTDELDIKLEKLTPDMLGS  206
                 N +    +V           +K  L  LA  T     +      L+ LTPD LG+
Sbjct  267  HFLAKNGIMALRRV-----------KKRDLERLAKATGARAVSS-----LDDLTPDDLGT  310

Query  207  TGAI---TITKEDTIILNGEGSKDAIAQRCEQIRGVMADPSTSEYEKEKLQERLAKLSGG  263
             G +    I  E    + G                                      S  
Sbjct  311  AGKVEEEKIGDEKYTFIEG------------------------------------CKSPK  334

Query  264  VAVIKVGGASEVEVGEKKDRVVDALNATRAAVEE-GILPGGGTALLKAAANGLDNVKPEN  322
             A I + GA++  + E +  + DAL   + A+E+  ++PGGG   ++ A    +  K  +
Sbjct  335  AATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVS  394

Query  323  FDQQLGVSIIKNAITRPARTIVENAGLEGSVIVGKLTDEFAK-DFNRGFDSSKGEYVDMI  381
              +QL +     A+    +T+ ENAGL+   ++ +L    A  + + G D   GE +DM 
Sbjct  395  GKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEIIDMK  454

Query  382  SSGILDPLKVVRTALLDASGVASLLGTTEVAIVEA  416
             +G++DPLKV R AL  A+  AS +   +  I++A
Sbjct  455  EAGVVDPLKVKRQALKSATEAASTILRID-DIIKA  488



Lambda      K        H        a         alpha
   0.313    0.134    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00017858

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  150     4e-41


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 150 bits (382),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 177/455 (39%), Gaps = 95/455 (21%)

Query  2    DLRRGIQAAVDAVVDYLQKNKR---DITTGEEIAQVATISANGD------THIGKLISTA  52
             +  G + A++  ++ L        +    E++ +VA  S +          + KL+  A
Sbjct  89   TIIEGYEKALEKALEILDSIISIPVEDVDREDLLKVARTSLSSKIISRESDFLAKLVVDA  148

Query  53   MERVGKE---------GVITVKEGKTIEDELEVTEGMRFDRGYTSPYFITDTKSQKV---  100
            +  + K          GV+ +  G    ++ E+ +G+  D+G   P      ++ KV   
Sbjct  149  VLAIPKNDGSFDLGNIGVVKILGGSL--EDSELVDGVVLDKGPLHPDMPKRLENAKVLLL  206

Query  101  ----EFEKP-----LILLSEKKISAVQD-----IIPALEASTTLRRPLVIIAEDIEGEAL  146
                E+EK      ++L   +++          I+  +E        +V+  + I+  AL
Sbjct  207  NCSLEYEKTETKATVVLSDAEQLERFLKAEEEQILEIVEKIIDSGVNVVVCQKGIDDLAL  266

Query  147  AVCILNKLRGQLQVAAVKAPGFGDNRKSILGDLAVLTNGTVFTDELDIKLEKLTPDMLGS  206
                 N +    +V           +K  L  LA  T     +      L+ LTPD LG+
Sbjct  267  HFLAKNGIMALRRV-----------KKRDLERLAKATGARAVSS-----LDDLTPDDLGT  310

Query  207  TGAI---TITKEDTIILNGEGSKDAIAQRCEQIRGVMADPSTSEYEKEKLQERLAKLSGG  263
             G +    I  E    + G                                      S  
Sbjct  311  AGKVEEEKIGDEKYTFIEG------------------------------------CKSPK  334

Query  264  VAVIKVGGASEVEVGEKKDRVVDALNATRAAVEE-GILPGGGTALLKAAANGLDNVKPEN  322
             A I + GA++  + E +  + DAL   + A+E+  ++PGGG   ++ A    +  K  +
Sbjct  335  AATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVS  394

Query  323  FDQQLGVSIIKNAITRPARTIVENAGLEGSVIVGKLTDEFAK-DFNRGFDSSKGEYVDMI  381
              +QL +     A+    +T+ ENAGL+   ++ +L    A  + + G D   GE +DM 
Sbjct  395  GKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEIIDMK  454

Query  382  SSGILDPLKVVRTALLDASGVASLLGTTEVAIVEA  416
             +G++DPLKV R AL  A+  AS +   +  I++A
Sbjct  455  EAGVVDPLKVKRQALKSATEAASTILRID-DIIKA  488



Lambda      K        H        a         alpha
   0.313    0.134    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00017861

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  150     4e-41


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 150 bits (382),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 177/455 (39%), Gaps = 95/455 (21%)

Query  2    DLRRGIQAAVDAVVDYLQKNKR---DITTGEEIAQVATISANGD------THIGKLISTA  52
             +  G + A++  ++ L        +    E++ +VA  S +          + KL+  A
Sbjct  89   TIIEGYEKALEKALEILDSIISIPVEDVDREDLLKVARTSLSSKIISRESDFLAKLVVDA  148

Query  53   MERVGKE---------GVITVKEGKTIEDELEVTEGMRFDRGYTSPYFITDTKSQKV---  100
            +  + K          GV+ +  G    ++ E+ +G+  D+G   P      ++ KV   
Sbjct  149  VLAIPKNDGSFDLGNIGVVKILGGSL--EDSELVDGVVLDKGPLHPDMPKRLENAKVLLL  206

Query  101  ----EFEKP-----LILLSEKKISAVQD-----IIPALEASTTLRRPLVIIAEDIEGEAL  146
                E+EK      ++L   +++          I+  +E        +V+  + I+  AL
Sbjct  207  NCSLEYEKTETKATVVLSDAEQLERFLKAEEEQILEIVEKIIDSGVNVVVCQKGIDDLAL  266

Query  147  AVCILNKLRGQLQVAAVKAPGFGDNRKSILGDLAVLTNGTVFTDELDIKLEKLTPDMLGS  206
                 N +    +V           +K  L  LA  T     +      L+ LTPD LG+
Sbjct  267  HFLAKNGIMALRRV-----------KKRDLERLAKATGARAVSS-----LDDLTPDDLGT  310

Query  207  TGAI---TITKEDTIILNGEGSKDAIAQRCEQIRGVMADPSTSEYEKEKLQERLAKLSGG  263
             G +    I  E    + G                                      S  
Sbjct  311  AGKVEEEKIGDEKYTFIEG------------------------------------CKSPK  334

Query  264  VAVIKVGGASEVEVGEKKDRVVDALNATRAAVEE-GILPGGGTALLKAAANGLDNVKPEN  322
             A I + GA++  + E +  + DAL   + A+E+  ++PGGG   ++ A    +  K  +
Sbjct  335  AATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVS  394

Query  323  FDQQLGVSIIKNAITRPARTIVENAGLEGSVIVGKLTDEFAK-DFNRGFDSSKGEYVDMI  381
              +QL +     A+    +T+ ENAGL+   ++ +L    A  + + G D   GE +DM 
Sbjct  395  GKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEIIDMK  454

Query  382  SSGILDPLKVVRTALLDASGVASLLGTTEVAIVEA  416
             +G++DPLKV R AL  A+  AS +   +  I++A
Sbjct  455  EAGVVDPLKVKRQALKSATEAASTILRID-DIIKA  488



Lambda      K        H        a         alpha
   0.313    0.134    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00017860

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  150     4e-41


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 150 bits (382),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 177/455 (39%), Gaps = 95/455 (21%)

Query  2    DLRRGIQAAVDAVVDYLQKNKR---DITTGEEIAQVATISANGD------THIGKLISTA  52
             +  G + A++  ++ L        +    E++ +VA  S +          + KL+  A
Sbjct  89   TIIEGYEKALEKALEILDSIISIPVEDVDREDLLKVARTSLSSKIISRESDFLAKLVVDA  148

Query  53   MERVGKE---------GVITVKEGKTIEDELEVTEGMRFDRGYTSPYFITDTKSQKV---  100
            +  + K          GV+ +  G    ++ E+ +G+  D+G   P      ++ KV   
Sbjct  149  VLAIPKNDGSFDLGNIGVVKILGGSL--EDSELVDGVVLDKGPLHPDMPKRLENAKVLLL  206

Query  101  ----EFEKP-----LILLSEKKISAVQD-----IIPALEASTTLRRPLVIIAEDIEGEAL  146
                E+EK      ++L   +++          I+  +E        +V+  + I+  AL
Sbjct  207  NCSLEYEKTETKATVVLSDAEQLERFLKAEEEQILEIVEKIIDSGVNVVVCQKGIDDLAL  266

Query  147  AVCILNKLRGQLQVAAVKAPGFGDNRKSILGDLAVLTNGTVFTDELDIKLEKLTPDMLGS  206
                 N +    +V           +K  L  LA  T     +      L+ LTPD LG+
Sbjct  267  HFLAKNGIMALRRV-----------KKRDLERLAKATGARAVSS-----LDDLTPDDLGT  310

Query  207  TGAI---TITKEDTIILNGEGSKDAIAQRCEQIRGVMADPSTSEYEKEKLQERLAKLSGG  263
             G +    I  E    + G                                      S  
Sbjct  311  AGKVEEEKIGDEKYTFIEG------------------------------------CKSPK  334

Query  264  VAVIKVGGASEVEVGEKKDRVVDALNATRAAVEE-GILPGGGTALLKAAANGLDNVKPEN  322
             A I + GA++  + E +  + DAL   + A+E+  ++PGGG   ++ A    +  K  +
Sbjct  335  AATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVS  394

Query  323  FDQQLGVSIIKNAITRPARTIVENAGLEGSVIVGKLTDEFAK-DFNRGFDSSKGEYVDMI  381
              +QL +     A+    +T+ ENAGL+   ++ +L    A  + + G D   GE +DM 
Sbjct  395  GKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEIIDMK  454

Query  382  SSGILDPLKVVRTALLDASGVASLLGTTEVAIVEA  416
             +G++DPLKV R AL  A+  AS +   +  I++A
Sbjct  455  EAGVVDPLKVKRQALKSATEAASTILRID-DIIKA  488



Lambda      K        H        a         alpha
   0.313    0.134    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00011699

Length=1097
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein. T...  63.9    2e-11


>CDD:460246 pfam01544, CorA, CorA-like Mg2+ transporter protein.  The CorA 
transport system is the primary Mg2+ influx system of Salmonella 
typhimurium and Escherichia coli. CorA is virtually ubiquitous 
in the Bacteria and Archaea. There are also eukaryotic 
relatives of this protein. The family includes the MRS2 
protein from yeast that is thought to be an RNA splicing protein. 
However its membership of this family suggests that its 
effect on splicing is due to altered magnesium levels in 
the cell.
Length=292

 Score = 63.9 bits (156),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 50/299 (17%), Positives = 106/299 (35%), Gaps = 38/299 (13%)

Query  701  GRLYEQANLHNSIYNELNGDLAR-RFETAGDLAALIVQHAVTVLLDRTLHHDLQILRIFE  759
              L     L      +L     R R E   D       + + VL    L    +   +  
Sbjct  18   EWLARTLGLDPLALEDLLDPEERPRVEDYDD-------YFLLVLPGVNLDDSEEADELVT  70

Query  760  ESISILRARLDSWLTKSQTESVTKSFKRFR-NRGFTINPA--------QHNKTADGRTMT  810
             SI +    L + +      ++ +  KR     G  ++P         +         + 
Sbjct  71   VSILLGDNFLIT-VRHEPLPALDEVRKRLTLLGGGPLDPGDLLYRLLDEIVDRFL-ELLE  128

Query  811  EAERDERDIRVAKENREDLSALLELRDIMDELGTIMKLLEQQTTTVKTMARYFEDRGYGK  870
            + E +  ++    E+  +   L EL  +   L  + + L  Q   +  + R  +D     
Sbjct  129  KLEDELDELEDELEDETNNELLRELAALRRSLVYLRRSLLPQRDVLNRLLRREDD----P  184

Query  871  AFVEATLARLDEYHNQVQEMRDNTILAQKAVENLLDLKQKQANVDESRLARWEAEVTQTQ  930
               +     L +  ++++ + ++    ++ + +L D               + + +++  
Sbjct  185  LLDDEQKEYLRDLLDRLERLLEDLDALRERLRSLQDE--------------YSSLLSERT  230

Query  931  SRSVMVFTIFTVIFLPLSFFTSLFGINVREWSGTETNPDFRLMFLIAVAIIVIALLLAF  989
            +R + V T+ T IFLPL+  T ++G+N       E         LI   +I++A+LL F
Sbjct  231  NRVMKVLTVVTAIFLPLTLITGIYGMNFGGLPELE-WSYGYPFVLILGLMILLAILLLF  288



Lambda      K        H        a         alpha
   0.318    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1396238000


Query= TCONS_00011700

Length=249


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00011701

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.117    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00011702

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  150     4e-41


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 150 bits (382),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 177/455 (39%), Gaps = 95/455 (21%)

Query  2    DLRRGIQAAVDAVVDYLQKNKR---DITTGEEIAQVATISANGD------THIGKLISTA  52
             +  G + A++  ++ L        +    E++ +VA  S +          + KL+  A
Sbjct  89   TIIEGYEKALEKALEILDSIISIPVEDVDREDLLKVARTSLSSKIISRESDFLAKLVVDA  148

Query  53   MERVGKE---------GVITVKEGKTIEDELEVTEGMRFDRGYTSPYFITDTKSQKV---  100
            +  + K          GV+ +  G    ++ E+ +G+  D+G   P      ++ KV   
Sbjct  149  VLAIPKNDGSFDLGNIGVVKILGGSL--EDSELVDGVVLDKGPLHPDMPKRLENAKVLLL  206

Query  101  ----EFEKP-----LILLSEKKISAVQD-----IIPALEASTTLRRPLVIIAEDIEGEAL  146
                E+EK      ++L   +++          I+  +E        +V+  + I+  AL
Sbjct  207  NCSLEYEKTETKATVVLSDAEQLERFLKAEEEQILEIVEKIIDSGVNVVVCQKGIDDLAL  266

Query  147  AVCILNKLRGQLQVAAVKAPGFGDNRKSILGDLAVLTNGTVFTDELDIKLEKLTPDMLGS  206
                 N +    +V           +K  L  LA  T     +      L+ LTPD LG+
Sbjct  267  HFLAKNGIMALRRV-----------KKRDLERLAKATGARAVSS-----LDDLTPDDLGT  310

Query  207  TGAI---TITKEDTIILNGEGSKDAIAQRCEQIRGVMADPSTSEYEKEKLQERLAKLSGG  263
             G +    I  E    + G                                      S  
Sbjct  311  AGKVEEEKIGDEKYTFIEG------------------------------------CKSPK  334

Query  264  VAVIKVGGASEVEVGEKKDRVVDALNATRAAVEE-GILPGGGTALLKAAANGLDNVKPEN  322
             A I + GA++  + E +  + DAL   + A+E+  ++PGGG   ++ A    +  K  +
Sbjct  335  AATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVS  394

Query  323  FDQQLGVSIIKNAITRPARTIVENAGLEGSVIVGKLTDEFAK-DFNRGFDSSKGEYVDMI  381
              +QL +     A+    +T+ ENAGL+   ++ +L    A  + + G D   GE +DM 
Sbjct  395  GKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEIIDMK  454

Query  382  SSGILDPLKVVRTALLDASGVASLLGTTEVAIVEA  416
             +G++DPLKV R AL  A+  AS +   +  I++A
Sbjct  455  EAGVVDPLKVKRQALKSATEAASTILRID-DIIKA  488



Lambda      K        H        a         alpha
   0.313    0.134    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00011703

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00017862

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  150     4e-41


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 150 bits (382),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 97/455 (21%), Positives = 177/455 (39%), Gaps = 95/455 (21%)

Query  2    DLRRGIQAAVDAVVDYLQKNKR---DITTGEEIAQVATISANGD------THIGKLISTA  52
             +  G + A++  ++ L        +    E++ +VA  S +          + KL+  A
Sbjct  89   TIIEGYEKALEKALEILDSIISIPVEDVDREDLLKVARTSLSSKIISRESDFLAKLVVDA  148

Query  53   MERVGKE---------GVITVKEGKTIEDELEVTEGMRFDRGYTSPYFITDTKSQKV---  100
            +  + K          GV+ +  G    ++ E+ +G+  D+G   P      ++ KV   
Sbjct  149  VLAIPKNDGSFDLGNIGVVKILGGSL--EDSELVDGVVLDKGPLHPDMPKRLENAKVLLL  206

Query  101  ----EFEKP-----LILLSEKKISAVQD-----IIPALEASTTLRRPLVIIAEDIEGEAL  146
                E+EK      ++L   +++          I+  +E        +V+  + I+  AL
Sbjct  207  NCSLEYEKTETKATVVLSDAEQLERFLKAEEEQILEIVEKIIDSGVNVVVCQKGIDDLAL  266

Query  147  AVCILNKLRGQLQVAAVKAPGFGDNRKSILGDLAVLTNGTVFTDELDIKLEKLTPDMLGS  206
                 N +    +V           +K  L  LA  T     +      L+ LTPD LG+
Sbjct  267  HFLAKNGIMALRRV-----------KKRDLERLAKATGARAVSS-----LDDLTPDDLGT  310

Query  207  TGAI---TITKEDTIILNGEGSKDAIAQRCEQIRGVMADPSTSEYEKEKLQERLAKLSGG  263
             G +    I  E    + G                                      S  
Sbjct  311  AGKVEEEKIGDEKYTFIEG------------------------------------CKSPK  334

Query  264  VAVIKVGGASEVEVGEKKDRVVDALNATRAAVEE-GILPGGGTALLKAAANGLDNVKPEN  322
             A I + GA++  + E +  + DAL   + A+E+  ++PGGG   ++ A    +  K  +
Sbjct  335  AATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVS  394

Query  323  FDQQLGVSIIKNAITRPARTIVENAGLEGSVIVGKLTDEFAK-DFNRGFDSSKGEYVDMI  381
              +QL +     A+    +T+ ENAGL+   ++ +L    A  + + G D   GE +DM 
Sbjct  395  GKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEIIDMK  454

Query  382  SSGILDPLKVVRTALLDASGVASLLGTTEVAIVEA  416
             +G++DPLKV R AL  A+  AS +   +  I++A
Sbjct  455  EAGVVDPLKVKRQALKSATEAASTILRID-DIIKA  488



Lambda      K        H        a         alpha
   0.313    0.134    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00017863

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  79.9    2e-17


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 79.9 bits (198),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 58/328 (18%), Positives = 109/328 (33%), Gaps = 92/328 (28%)

Query  2    DLRRGIQAAVDAVVDYLQKNKR---DITTGEEIAQVATISANGD------THIGKLISTA  52
             +  G + A++  ++ L        +    E++ +VA  S +          + KL+  A
Sbjct  89   TIIEGYEKALEKALEILDSIISIPVEDVDREDLLKVARTSLSSKIISRESDFLAKLVVDA  148

Query  53   MERVGKE---------GVITVKEGKTIEDELEVTEGMRFDRGYTSPYFITDTKSQKV---  100
            +  + K          GV+ +  G    ++ E+ +G+  D+G   P      ++ KV   
Sbjct  149  VLAIPKNDGSFDLGNIGVVKILGGSL--EDSELVDGVVLDKGPLHPDMPKRLENAKVLLL  206

Query  101  ----EFEKP-----LILLSEKKISAVQD-----IIPALEASTTLRRPLVIIAEDIEGEAL  146
                E+EK      ++L   +++          I+  +E        +V+  + I+  AL
Sbjct  207  NCSLEYEKTETKATVVLSDAEQLERFLKAEEEQILEIVEKIIDSGVNVVVCQKGIDDLAL  266

Query  147  AVCILNKLRGQLQVAAVKAPGFGDNRKSILGDLAVLTNGTVFTDELDIKLEKLTPDMLGS  206
                 N +    +V           +K  L  LA  T     +      L+ LTPD LG+
Sbjct  267  HFLAKNGIMALRRV-----------KKRDLERLAKATGARAVSS-----LDDLTPDDLGT  310

Query  207  TGAI---TITKEDTIILNGEGSKDAIAQRCEQIRGVMADPSTSEYEKEKLQERLAKLSGG  263
             G +    I  E    + G                                      S  
Sbjct  311  AGKVEEEKIGDEKYTFIEG------------------------------------CKSPK  334

Query  264  VAVIKVGGASEVEVGEKKDRVVDALNAT  291
             A I + GA++  + E +  + DAL   
Sbjct  335  AATILLRGATDHVLDEIERSIHDALCVV  362



Lambda      K        H        a         alpha
   0.313    0.133    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00011704

Length=279


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00011706

Length=612


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 777102560


Query= TCONS_00011705

Length=612


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 777102560


Query= TCONS_00011707

Length=337


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00011708

Length=664
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461179 pfam04112, Mak10, Mak10 subunit, NatC N(alpha)-termina...  150     5e-43


>CDD:461179 pfam04112, Mak10, Mak10 subunit, NatC N(alpha)-terminal acetyltransferase. 
 NatC N(alpha)-terminal acetyltransferases contains 
Mak10p, Mak31p and Mak3p subunits. All three subunits 
are associated with each other to form the active complex.
Length=162

 Score = 150 bits (382),  Expect = 5e-43, Method: Composition-based stats.
 Identities = 49/101 (49%), Positives = 61/101 (60%), Gaps = 3/101 (3%)

Query  1    MAWHMGHPLSQTLFTSLYLDKLLWPVPKTFEDARFAREKLGDKKEDSKLLHLVLRAYCLA  60
            MAWH G PLSQT+ T LY++ LL P PK+ ++A F  +KL       +L+  VLRAY L 
Sbjct  65   MAWHNGSPLSQTVLTCLYVEHLLLPSPKSLKEASFDSDKL---STGLELVDKVLRAYVLG  121

Query  61   LVKCCDFVHSRVSAEFYYEEEDFVTQLYNRSLLSQFDVTHF  101
            L+K CDFV   +S+   YEEEDFVT  Y  SLL    V   
Sbjct  122  LLKFCDFVLRELSSGVLYEEEDFVTNTYGLSLLEGIPVEEI  162



Lambda      K        H        a         alpha
   0.321    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 842105090


Query= TCONS_00011709

Length=268


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0647    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00011710

Length=279


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00011711

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00011712

Length=468


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00017864

Length=767
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461179 pfam04112, Mak10, Mak10 subunit, NatC N(alpha)-termina...  260     1e-83


>CDD:461179 pfam04112, Mak10, Mak10 subunit, NatC N(alpha)-terminal acetyltransferase. 
 NatC N(alpha)-terminal acetyltransferases contains 
Mak10p, Mak31p and Mak3p subunits. All three subunits 
are associated with each other to form the active complex.
Length=162

 Score = 260 bits (668),  Expect = 1e-83, Method: Composition-based stats.
 Identities = 88/168 (52%), Positives = 105/168 (63%), Gaps = 6/168 (4%)

Query  37   TGELIKDEYFTLFEAVGALEIMDSKMDSGYLGPGENQAHALEDDYDIMRELAPEEVVGIM  96
             GEL+KD  FTLFEA  ALEIMD KMDSG + P   +    E D+D  R L PEEV+GIM
Sbjct  1    PGELVKDPGFTLFEATSALEIMDPKMDSGLIAPELEE---EELDFDPSRPLLPEEVLGIM  57

Query  97   DELLCHEMAWHMGHPLSQTLFTSLYLDKLLWPVPKTFEDARFAREKLGDKKEDSKLLHLV  156
            D LL  EMAWH G PLSQT+ T LY++ LL P PK+ ++A F  +KL       +L+  V
Sbjct  58   DRLLRSEMAWHNGSPLSQTVLTCLYVEHLLLPSPKSLKEASFDSDKL---STGLELVDKV  114

Query  157  LRAYCLALVKCCDFVHSRVSAEFYYEEEDFVTQLYNRSLLSQFDVTHF  204
            LRAY L L+K CDFV   +S+   YEEEDFVT  Y  SLL    V   
Sbjct  115  LRAYVLGLLKFCDFVLRELSSGVLYEEEDFVTNTYGLSLLEGIPVEEI  162



Lambda      K        H        a         alpha
   0.320    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 979317296


Query= TCONS_00011713

Length=71
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461373 pfam04627, ATP-synt_Eps, Mitochondrial ATP synthase ep...  74.1    2e-20


>CDD:461373 pfam04627, ATP-synt_Eps, Mitochondrial ATP synthase epsilon chain. 
 This family constitutes the mitochondrial ATP synthase 
epsilon subunit. This is not to be confused with the bacterial 
epsilon subunit, which is homologous to the mitochondrial 
delta subunit (pfam00401 and pfam02823) The epsilon subunit 
is located in the extrinsic membrane section F1, which is 
the catalytic site of ATP synthesis. The epsilon subunit was 
not well ordered in the crystal structure of bovine F1, but 
it is known to be located in the stalk region of F1. E subunit 
is thought to be involved in the regulation of ATP synthase, 
since a null mutation increased oligomycin sensitivity 
and decreased inhibition by inhibitor protein IF1.
Length=49

 Score = 74.1 bits (183),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 43/49 (88%), Gaps = 0/49 (0%)

Query  3   AAWKAAGLTYNRYLAVAARAVRRSLKDGPRLAAERRGQSELRFAKWEDG  51
           +AW+AAGL+YN+Y  +AARAVRR+LK+  R AAE+RG++EL++ KWE+G
Sbjct  1   SAWRAAGLSYNKYSNIAARAVRRALKEEFRAAAEKRGETELKYTKWENG  49



Lambda      K        H        a         alpha
   0.312    0.122    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00017865

Length=677
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461179 pfam04112, Mak10, Mak10 subunit, NatC N(alpha)-termina...  216     2e-67


>CDD:461179 pfam04112, Mak10, Mak10 subunit, NatC N(alpha)-terminal acetyltransferase. 
 NatC N(alpha)-terminal acetyltransferases contains 
Mak10p, Mak31p and Mak3p subunits. All three subunits 
are associated with each other to form the active complex.
Length=162

 Score = 216 bits (553),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 73/147 (50%), Positives = 89/147 (61%), Gaps = 6/147 (4%)

Query  1    MDSKMDSGYLGPGENQAHALEDDYDIMRELAPEEVVGIMDELLCHEMAWHMGHPLSQTLF  60
            MD KMDSG + P   +    E D+D  R L PEEV+GIMD LL  EMAWH G PLSQT+ 
Sbjct  22   MDPKMDSGLIAPELEE---EELDFDPSRPLLPEEVLGIMDRLLRSEMAWHNGSPLSQTVL  78

Query  61   TSLYLDKLLWPVPKTFEDARFAREKLGDKKEDSKLLHLVLRAYCLALVKCCDFVHSRVSA  120
            T LY++ LL P PK+ ++A F  +KL       +L+  VLRAY L L+K CDFV   +S+
Sbjct  79   TCLYVEHLLLPSPKSLKEASFDSDKL---STGLELVDKVLRAYVLGLLKFCDFVLRELSS  135

Query  121  EFYYEEEDFVTQLYNRSLLSQFDVTHF  147
               YEEEDFVT  Y  SLL    V   
Sbjct  136  GVLYEEEDFVTNTYGLSLLEGIPVEEI  162



Lambda      K        H        a         alpha
   0.319    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 861277360


Query= TCONS_00011715

Length=315


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00011716

Length=268


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00011717

Length=268


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00017866

Length=320


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00017867

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395098 pfam00150, Cellulase, Cellulase (glycosyl hydrolase fa...  64.7    2e-12


>CDD:395098 pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5). 
 
Length=272

 Score = 64.7 bits (158),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 53/266 (20%), Positives = 88/266 (33%), Gaps = 50/266 (19%)

Query  90   ASHWGSW-----ITQDDIAEMVSYGLNTIRVPVGYWMREDLVYSDSEHFPQGGLQYLENL  144
             +H G W      T+  I  +  +G N +R+PV       +  +      +  L  ++ +
Sbjct  13   VTHGGQWGNPYVTTKAMIDLVKDWGFNVVRLPVS--WGGYVPNNPDYLIDENWLNRVDEV  70

Query  145  CEWASDAGLYIIIDLHGAPGAQTPQNPFTGQYAPIAGFYQDYQFEGALKFLEWMTTNIHQ  204
             ++A D G+Y+IID H   G         G       F++        K    + T    
Sbjct  71   VDYAIDNGMYVIIDWHHDGG---WPGDPNGNIDTAKAFFK--------KIWTQIATRYGN  119

Query  205  NDKFRNVGMLEVVNEP-VQDAGKVGSMRSSYYPNAFKRIRAAEQSLNIDRNNYLHIQMMD  263
            N    NV   E++NEP   D          Y   A   IRAA        NN +   ++ 
Sbjct  120  NP---NVIF-ELMNEPHGNDQATWADDVKDYAQEAIDAIRAA------GPNNLI---IVG  166

Query  264  RLWGSGDPNESL----TDTYYAAYDDHRYLKWASVAVSKDSYISTSCSDQLNSNT-----  314
                S +P+ +      D     Y  H Y          D    T+ + +L +       
Sbjct  167  GNSWSQNPDGAALNDPNDDDNLIYSVHFYAPSDFSGTWFDCEDPTNLAQRLRAAANWALD  226

Query  315  ---PTIVGEWSLS------VPDNVQW  331
               P  +GE+           +  +W
Sbjct  227  NGIPVFIGEFGGGNADGPCRDEAEKW  252



Lambda      K        H        a         alpha
   0.317    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00011719

Length=279


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00011718

Length=279


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00017868

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395098 pfam00150, Cellulase, Cellulase (glycosyl hydrolase fa...  67.0    5e-13


>CDD:395098 pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5). 
 
Length=272

 Score = 67.0 bits (164),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 97/297 (33%), Gaps = 57/297 (19%)

Query  90   ASHWGSW-----ITQDDIAEMVSYGLNTIRVPVGYWMREDLVYSDSEHFPQGGLQYLENL  144
             +H G W      T+  I  +  +G N +R+PV       +  +      +  L  ++ +
Sbjct  13   VTHGGQWGNPYVTTKAMIDLVKDWGFNVVRLPVS--WGGYVPNNPDYLIDENWLNRVDEV  70

Query  145  CEWASDAGLYIIIDLHGAPGAQTPQNPFTGQYAPIAGFYQDYQFEGALKFLEWMTTNIHQ  204
             ++A D G+Y+IID H   G         G       F++        K    + T    
Sbjct  71   VDYAIDNGMYVIIDWHHDGG---WPGDPNGNIDTAKAFFK--------KIWTQIATRYGN  119

Query  205  NDKFRNVGMLEVVNEP-VQDAGKVGSMRSSYYPNAFKRIRAAEQSLNIDRNNYLHIQMMD  263
            N    NV   E++NEP   D          Y   A   IRAA        NN +   ++ 
Sbjct  120  NP---NVIF-ELMNEPHGNDQATWADDVKDYAQEAIDAIRAA------GPNNLI---IVG  166

Query  264  RLWGSGDPNESL----TDTYYAAYDDHRYLKWASVAVSKDSYISTSCSDQLNSNT-----  314
                S +P+ +      D     Y  H Y          D    T+ + +L +       
Sbjct  167  GNSWSQNPDGAALNDPNDDDNLIYSVHFYAPSDFSGTWFDCEDPTNLAQRLRAAANWALD  226

Query  315  ---PTIVGEWSLSVPDNVQWNSDWSPDSNKDFYKKWFAAQVTAYERQQGWIFWTWKA  368
               P  +GE+          N+D      +D  +KW        E    W  W+   
Sbjct  227  NGIPVFIGEFGGG-------NADG---PCRDEAEKWLDY---LKENGISWTGWSNGN  270



Lambda      K        H        a         alpha
   0.317    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00017869

Length=215


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00017870

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00011721

Length=215


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00011722

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395098 pfam00150, Cellulase, Cellulase (glycosyl hydrolase fa...  67.8    3e-13


>CDD:395098 pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5). 
 
Length=272

 Score = 67.8 bits (166),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 97/297 (33%), Gaps = 57/297 (19%)

Query  90   ASHWGSW-----ITQDDIAEMVSYGLNTIRVPVGYWMREDLVYSDSEHFPQGGLQYLENL  144
             +H G W      T+  I  +  +G N +R+PV       +  +      +  L  ++ +
Sbjct  13   VTHGGQWGNPYVTTKAMIDLVKDWGFNVVRLPVS--WGGYVPNNPDYLIDENWLNRVDEV  70

Query  145  CEWASDAGLYIIIDLHGAPGAQTPQNPFTGQYAPIAGFYQDYQFEGALKFLEWMTTNIHQ  204
             ++A D G+Y+IID H   G         G       F++        K    + T    
Sbjct  71   VDYAIDNGMYVIIDWHHDGG---WPGDPNGNIDTAKAFFK--------KIWTQIATRYGN  119

Query  205  NDKFRNVGMLEVVNEP-VQDAGKVGSMRSSYYPNAFKRIRAAEQSLNIDRNNYLHIQMMD  263
            N    NV   E++NEP   D          Y   A   IRAA        NN +   ++ 
Sbjct  120  NP---NVIF-ELMNEPHGNDQATWADDVKDYAQEAIDAIRAA------GPNNLI---IVG  166

Query  264  RLWGSGDPNESL----TDTYYAAYDDHRYLKWASVAVSKDSYISTSCSDQLNSNT-----  314
                S +P+ +      D     Y  H Y          D    T+ + +L +       
Sbjct  167  GNSWSQNPDGAALNDPNDDDNLIYSVHFYAPSDFSGTWFDCEDPTNLAQRLRAAANWALD  226

Query  315  ---PTIVGEWSLSVPDNVQWNSDWSPDSNKDFYKKWFAAQVTAYERQQGWIFWTWKA  368
               P  +GE+          N+D      +D  +KW        E    W  W+   
Sbjct  227  NGIPVFIGEFGGG-------NADG---PCRDEAEKWLDY---LKENGISWTGWSNGN  270



Lambda      K        H        a         alpha
   0.317    0.133    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00011724

Length=81
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395860 pfam01083, Cutinase, Cutinase                              88.6    1e-24


>CDD:395860 pfam01083, Cutinase, Cutinase.  
Length=173

 Score = 88.6 bits (220),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 36/82 (44%), Positives = 45/82 (55%), Gaps = 2/82 (2%)

Query  1    MHGAIRNLPSNVQNMIKGVVLFGDTRNKQDGGRIPNFPTDRTKIYCAFGDLVCDGTLIIT  60
            M  AI  LP+ V + +  VVLFGD  N Q    I   P  +T  YC  GD +C GT    
Sbjct  93   MDNAICGLPAAVADKVAAVVLFGDPSNGQGLPGISPLPASKTISYCDAGDPIC-GTGNNL  151

Query  61   PAHLSYGDD-VPSATSFLLSKV  81
            PAHLSYG D    A +F++SK+
Sbjct  152  PAHLSYGSDYTTQAAAFVVSKL  173



Lambda      K        H        a         alpha
   0.322    0.141    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00011725

Length=81
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395860 pfam01083, Cutinase, Cutinase                              88.6    1e-24


>CDD:395860 pfam01083, Cutinase, Cutinase.  
Length=173

 Score = 88.6 bits (220),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 36/82 (44%), Positives = 45/82 (55%), Gaps = 2/82 (2%)

Query  1    MHGAIRNLPSNVQNMIKGVVLFGDTRNKQDGGRIPNFPTDRTKIYCAFGDLVCDGTLIIT  60
            M  AI  LP+ V + +  VVLFGD  N Q    I   P  +T  YC  GD +C GT    
Sbjct  93   MDNAICGLPAAVADKVAAVVLFGDPSNGQGLPGISPLPASKTISYCDAGDPIC-GTGNNL  151

Query  61   PAHLSYGDD-VPSATSFLLSKV  81
            PAHLSYG D    A +F++SK+
Sbjct  152  PAHLSYGSDYTTQAAAFVVSKL  173



Lambda      K        H        a         alpha
   0.322    0.141    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00011726

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395860 pfam01083, Cutinase, Cutinase                              184     4e-60


>CDD:395860 pfam01083, Cutinase, Cutinase.  
Length=173

 Score = 184 bits (469),  Expect = 4e-60, Method: Composition-based stats.
 Identities = 88/180 (49%), Positives = 105/180 (58%), Gaps = 10/180 (6%)

Query  35   PCEPITFIFARGSTEPGLLGITTGPGVCNALKLSRPGQ--VACQGVGPAYIADLASNFLP  92
             C  +  IFARG+TEPG LG + GP V +AL+ S PG   VA QGV   Y ADL    L 
Sbjct  1    SCPDVHVIFARGTTEPGGLG-SVGPAVVSALE-SAPGSTSVAVQGVN--YPADLGQ--LY  54

Query  93   QGTSQVAIDEAAGLFKLAASKCPDTKIVAGGYSQGAAVMHGAIRNLPSNVQNMIKGVVLF  152
             G++    + AA L   A SKCPDTKIV GGYSQGA VM  AI  LP+ V + +  VVLF
Sbjct  55   AGSASAGANAAAALINSANSKCPDTKIVLGGYSQGAQVMDNAICGLPAAVADKVAAVVLF  114

Query  153  GDTRNKQDGGRIPNFPTDRTKIYCAFGDLVCDGTLIITPAHLSYGDD-VPSATSFLLSKV  211
            GD  N Q    I   P  +T  YC  GD +C GT    PAHLSYG D    A +F++SK+
Sbjct  115  GDPSNGQGLPGISPLPASKTISYCDAGDPIC-GTGNNLPAHLSYGSDYTTQAAAFVVSKL  173



Lambda      K        H        a         alpha
   0.320    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00011727

Length=601
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like...  65.2    2e-11


>CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This 
family includes FMO proteins, cyclohexanone mono-oxygenase 
and a number of different mono-oxygenases.
Length=531

 Score = 65.2 bits (159),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 29/213 (14%)

Query  68   VVGTGFSGIYALQSLLKLNLKVKAIDAASDVGGTWYW---------SRYPGAMSDSWSHL  118
            V+G G SG+ +++  L+  L+    + + D+GG W +         S Y   ++++   +
Sbjct  6    VIGAGVSGLASIKCCLEEGLEPTCFERSDDIGGLWRFTENVEEGRASIYKSVITNTSKEM  65

Query  119  YRYSFDYEYPL-YRRYVSQPEMLAYLRHVVEKYDLRGHMQFNTDM----------TSAVW  167
              +S D+ +P  Y  ++   + L Y R   +++DL  ++QF T +          TS  W
Sbjct  66   SCFS-DFPFPEDYPNFMHNSKFLEYFRMFAKEFDLLKYIQFKTTVCSVKKRPDFSTSGQW  124

Query  168  DEGTSTWRVSCKTGDVFHVRYLLTALGLLTKANYP--DLPGLQTFRGEIRHTSAWDTDLD  225
            +    T     +   VF    + T  G  T  + P    PG++ F+G+  H+  +     
Sbjct  125  E--VVTEHEGKQESAVFDAVMVCT--GHHTNPHLPLESFPGIEKFKGQYFHSRDYKHPEG  180

Query  226  LKGKRVGLVGVGSSGVQLVPAVADTVQSLHVFI  258
              GKRV ++G+G+SG  +  AV  +  +  VF+
Sbjct  181  FTGKRVLVIGIGNSGGDI--AVELSHTAAQVFL  211



Lambda      K        H        a         alpha
   0.321    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 760663852


Query= TCONS_00011728

Length=255


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 277421980


Query= TCONS_00011729

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00011730

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00017873

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.128    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00011731

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00017874

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.492    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00017876

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.492    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00017875

Length=117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:280534 pfam02386, TrkH, Cation transport protein. This family...  59.4    5e-12


>CDD:280534 pfam02386, TrkH, Cation transport protein.  This family consists 
of various cation transport proteins (Trk) and V-type sodium 
ATP synthase subunit J or translocating ATPase J EC:3.6.1.34. 
These proteins are involved in active sodium up-take 
utilising ATP in the process. TrkH a member of the family from 
E. coli is a hydrophobic membrane protein and determines 
the specificity and kinetics of cation transport by the TrK 
system in E. coli.
Length=491

 Score = 59.4 bits (144),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query  21   LVLERRQKDQLAGIENQVLKTLWMVLMCYFIFFHILCFLVVVLWIWLTPVFGQSVMVNGV  80
            L L   Q  +L G E   L  L  +L  Y+    IL F+   ++I+    + +      V
Sbjct  125  LYLSEMQGPELGGKEYPSLSELCKILWVYYFGLTILAFVAYFVFIYTAKGYLE-----VV  179

Query  81   KTFRWELFTAGSSFKVLGYTLTPDTMVSFKNAAFP  115
              + W  F + S+F   G++LTP+++ SF      
Sbjct  180  PLW-WAFFHSMSAFSNGGFSLTPNSIASFNTNPVI  213



Lambda      K        H        a         alpha
   0.332    0.142    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00011732

Length=106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:280534 pfam02386, TrkH, Cation transport protein. This family...  72.5    6e-17


>CDD:280534 pfam02386, TrkH, Cation transport protein.  This family consists 
of various cation transport proteins (Trk) and V-type sodium 
ATP synthase subunit J or translocating ATPase J EC:3.6.1.34. 
These proteins are involved in active sodium up-take 
utilising ATP in the process. TrkH a member of the family from 
E. coli is a hydrophobic membrane protein and determines 
the specificity and kinetics of cation transport by the TrK 
system in E. coli.
Length=491

 Score = 72.5 bits (178),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 45/105 (43%), Positives = 61/105 (58%), Gaps = 6/105 (6%)

Query  1    MMYIS-SDFPTAITMRKTNVYEERSVGVYEHDSVSEAESRNGKHVGLAVHIQRQLGFDLW  59
            MM+I  +   TA  +++T VYEE S+G YE     E  + + K +    H+ RQL  DLW
Sbjct  343  MMFIGGAPGSTAGGIKRTRVYEEFSLGKYEIHGDPEPRAVSTKSIDGK-HLTRQLSEDLW  401

Query  60   YVMLEIFLIAITEGGRLQKAADETTFSLFSVPFEIVS-YGTAGLS  103
            Y+ L +F+I I EG +L    D   FS F + FE+VS YGT GLS
Sbjct  402  YLFLGLFIICICEGLKLS---DVGPFSFFDILFEVVSAYGTVGLS  443



Lambda      K        H        a         alpha
   0.320    0.135    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00011733

Length=106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:280534 pfam02386, TrkH, Cation transport protein. This family...  72.5    6e-17


>CDD:280534 pfam02386, TrkH, Cation transport protein.  This family consists 
of various cation transport proteins (Trk) and V-type sodium 
ATP synthase subunit J or translocating ATPase J EC:3.6.1.34. 
These proteins are involved in active sodium up-take 
utilising ATP in the process. TrkH a member of the family from 
E. coli is a hydrophobic membrane protein and determines 
the specificity and kinetics of cation transport by the TrK 
system in E. coli.
Length=491

 Score = 72.5 bits (178),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 45/105 (43%), Positives = 61/105 (58%), Gaps = 6/105 (6%)

Query  1    MMYIS-SDFPTAITMRKTNVYEERSVGVYEHDSVSEAESRNGKHVGLAVHIQRQLGFDLW  59
            MM+I  +   TA  +++T VYEE S+G YE     E  + + K +    H+ RQL  DLW
Sbjct  343  MMFIGGAPGSTAGGIKRTRVYEEFSLGKYEIHGDPEPRAVSTKSIDGK-HLTRQLSEDLW  401

Query  60   YVMLEIFLIAITEGGRLQKAADETTFSLFSVPFEIVS-YGTAGLS  103
            Y+ L +F+I I EG +L    D   FS F + FE+VS YGT GLS
Sbjct  402  YLFLGLFIICICEGLKLS---DVGPFSFFDILFEVVSAYGTVGLS  443



Lambda      K        H        a         alpha
   0.320    0.135    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00011734

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00017877

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00011735

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460820 pfam03134, TB2_DP1_HVA22, TB2/DP1, HVA22 family. This ...  116     2e-33


>CDD:460820 pfam03134, TB2_DP1_HVA22, TB2/DP1, HVA22 family.  This family 
includes members from a wide variety of eukaryotes. It includes 
the TB2/DP1 (deleted in polyposis) protein, which in humans 
is deleted in severe forms of familial adenomatous polyposis, 
an autosomal dominant oncological inherited disease. 
The family also includes the plant protein of known similarity 
to TB2/DP1, the HVA22 abscisic acid-induced protein, which 
is thought to be a regulatory protein.
Length=77

 Score = 116 bits (292),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 40/77 (52%), Positives = 50/77 (65%), Gaps = 0/77 (0%)

Query  18  PVFASYKALRSSDPSQLAPWLMYWVVLSGISLAESWTIFILGWIPFYSWFRLFFFSYLVL  77
           P +ASYKAL S D      WL YWVV    +L ES+  F+L WIPFY  F+L F  +LVL
Sbjct  1   PAYASYKALESPDKDDDTQWLTYWVVFGFFTLVESFADFLLSWIPFYYEFKLLFLLWLVL  60

Query  78  PQTQGAKILYQTYVDPF  94
           PQTQGA  +Y+ ++ PF
Sbjct  61  PQTQGATYIYEKFLRPF  77



Lambda      K        H        a         alpha
   0.318    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00011736

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00017878

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00017879

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00011737

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460820 pfam03134, TB2_DP1_HVA22, TB2/DP1, HVA22 family. This ...  116     2e-33


>CDD:460820 pfam03134, TB2_DP1_HVA22, TB2/DP1, HVA22 family.  This family 
includes members from a wide variety of eukaryotes. It includes 
the TB2/DP1 (deleted in polyposis) protein, which in humans 
is deleted in severe forms of familial adenomatous polyposis, 
an autosomal dominant oncological inherited disease. 
The family also includes the plant protein of known similarity 
to TB2/DP1, the HVA22 abscisic acid-induced protein, which 
is thought to be a regulatory protein.
Length=77

 Score = 116 bits (292),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 40/77 (52%), Positives = 50/77 (65%), Gaps = 0/77 (0%)

Query  18  PVFASYKALRSSDPSQLAPWLMYWVVLSGISLAESWTIFILGWIPFYSWFRLFFFSYLVL  77
           P +ASYKAL S D      WL YWVV    +L ES+  F+L WIPFY  F+L F  +LVL
Sbjct  1   PAYASYKALESPDKDDDTQWLTYWVVFGFFTLVESFADFLLSWIPFYYEFKLLFLLWLVL  60

Query  78  PQTQGAKILYQTYVDPF  94
           PQTQGA  +Y+ ++ PF
Sbjct  61  PQTQGATYIYEKFLRPF  77



Lambda      K        H        a         alpha
   0.318    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00011739

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00011740

Length=1456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397130 pfam02854, MIF4G, MIF4G domain. MIF4G is named after M...  143     2e-39
CDD:432365 pfam12152, eIF_4G1, Eukaryotic translation initiation ...  94.2    7e-24


>CDD:397130 pfam02854, MIF4G, MIF4G domain.  MIF4G is named after Middle 
domain of eukaryotic initiation factor 4G (eIF4G). Also occurs 
in NMD2p and CBP80. The domain is rich in alpha-helices and 
may contain multiple alpha-helical repeats. In eIF4G, this 
domain binds eIF4A, eIF3, RNA and DNA.
Length=203

 Score = 143 bits (363),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 80/245 (33%), Positives = 122/245 (50%), Gaps = 51/245 (21%)

Query  1026  QRKVKAALNKMTPENFDRISGQILEIVSQSKDESDGRTLRQVIQLTFEKATDEAHWASIY  1085
              +KVK  LNK++PENF+++  ++L++       SD   L+ +I+L FEKA +E ++   Y
Sbjct  1     LKKVKGILNKLSPENFEKLIKELLKL-----IMSDPELLKYLIELIFEKAVEEPNFIPAY  55

Query  1086  AKFCKRMLESMSPEIKDENIRDKNGNVVTGGSLFRKYLLNRCQEEFERGWKVNLPPKPEG  1145
             A+ C  +    +                   + F  +LLNR QEEFE         K   
Sbjct  56    ARLCSGL----NLRNP---------------TDFGIHLLNRLQEEFE---------KRFE  87

Query  1146  TTEEAAMLSDEYYAAAAAKRRGLGLVKFIGELYKLGMLTERIMHECVKKLVDY----EGM  1201
               E               +RR LGLV+F+GELYK G+LTE+I+ EC+K+L+      +  
Sbjct  88    LEENEQG----------NRRRRLGLVRFLGELYKFGLLTEKILFECLKELLSSLTKEDLK  137

Query  1202  PEEAEVESLTSLLRTIGASLDASERGHTFMDAYFARINMMMDIPG---LPSRLRFMLMDI  1258
              +   +E L +LL TIG  L+ +E+    MD +   I   +       L SRLRFML D+
Sbjct  138   RDLFNLECLLTLLTTIGKLLE-NEKLPKLMDQFLDEIQKYVLSKDDPKLSSRLRFMLQDL  196

Query  1259  VDLRN  1263
             ++LR 
Sbjct  197   IELRK  201


>CDD:432365 pfam12152, eIF_4G1, Eukaryotic translation initiation factor 
4G1.  This domain is found in eukaryotes, and is about 80 amino 
acids in length. It is found in association with pfam02854. 
This domain is part of the protein eIF_4G. It binds to eIF_4E 
by wrapping around its N terminal to form the eIF_4F complex. 
This complex binds various eIF_4E-BPs (binding proteins) 
to regulate initiation of translation.
Length=60

 Score = 94.2 bits (235),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 42/63 (67%), Gaps = 3/63 (5%)

Query  793  QPSAAMKSLQSARFVDDLSKINYPPSIVSPNPALNANAPADRKFHYNKEFLLQFQSVFKE  852
             PSA ++SL+SAR ++D+    YP  I SP+PALN  A    K+ Y+ +FLLQF+ V KE
Sbjct  1    TPSAFLESLKSARPIEDIYSFKYPEGIESPDPALNKEA---VKYRYDPDFLLQFKDVVKE  57

Query  853  KPS  855
            KP 
Sbjct  58   KPD  60



Lambda      K        H        a         alpha
   0.306    0.124    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1841397434


Query= TCONS_00011741

Length=1411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397130 pfam02854, MIF4G, MIF4G domain. MIF4G is named after M...  143     2e-39
CDD:432365 pfam12152, eIF_4G1, Eukaryotic translation initiation ...  94.6    5e-24


>CDD:397130 pfam02854, MIF4G, MIF4G domain.  MIF4G is named after Middle 
domain of eukaryotic initiation factor 4G (eIF4G). Also occurs 
in NMD2p and CBP80. The domain is rich in alpha-helices and 
may contain multiple alpha-helical repeats. In eIF4G, this 
domain binds eIF4A, eIF3, RNA and DNA.
Length=203

 Score = 143 bits (363),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 80/245 (33%), Positives = 122/245 (50%), Gaps = 51/245 (21%)

Query  1026  QRKVKAALNKMTPENFDRISGQILEIVSQSKDESDGRTLRQVIQLTFEKATDEAHWASIY  1085
              +KVK  LNK++PENF+++  ++L++       SD   L+ +I+L FEKA +E ++   Y
Sbjct  1     LKKVKGILNKLSPENFEKLIKELLKL-----IMSDPELLKYLIELIFEKAVEEPNFIPAY  55

Query  1086  AKFCKRMLESMSPEIKDENIRDKNGNVVTGGSLFRKYLLNRCQEEFERGWKVNLPPKPEG  1145
             A+ C  +    +                   + F  +LLNR QEEFE         K   
Sbjct  56    ARLCSGL----NLRNP---------------TDFGIHLLNRLQEEFE---------KRFE  87

Query  1146  TTEEAAMLSDEYYAAAAAKRRGLGLVKFIGELYKLGMLTERIMHECVKKLVDY----EGM  1201
               E               +RR LGLV+F+GELYK G+LTE+I+ EC+K+L+      +  
Sbjct  88    LEENEQG----------NRRRRLGLVRFLGELYKFGLLTEKILFECLKELLSSLTKEDLK  137

Query  1202  PEEAEVESLTSLLRTIGASLDASERGHTFMDAYFARINMMMDIPG---LPSRLRFMLMDI  1258
              +   +E L +LL TIG  L+ +E+    MD +   I   +       L SRLRFML D+
Sbjct  138   RDLFNLECLLTLLTTIGKLLE-NEKLPKLMDQFLDEIQKYVLSKDDPKLSSRLRFMLQDL  196

Query  1259  VDLRN  1263
             ++LR 
Sbjct  197   IELRK  201


>CDD:432365 pfam12152, eIF_4G1, Eukaryotic translation initiation factor 
4G1.  This domain is found in eukaryotes, and is about 80 amino 
acids in length. It is found in association with pfam02854. 
This domain is part of the protein eIF_4G. It binds to eIF_4E 
by wrapping around its N terminal to form the eIF_4F complex. 
This complex binds various eIF_4E-BPs (binding proteins) 
to regulate initiation of translation.
Length=60

 Score = 94.6 bits (236),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 42/63 (67%), Gaps = 3/63 (5%)

Query  793  QPSAAMKSLQSARFVDDLSKINYPPSIVSPNPALNANAPADRKFHYNKEFLLQFQSVFKE  852
             PSA ++SL+SAR ++D+    YP  I SP+PALN  A    K+ Y+ +FLLQF+ V KE
Sbjct  1    TPSAFLESLKSARPIEDIYSFKYPEGIESPDPALNKEA---VKYRYDPDFLLQFKDVVKE  57

Query  853  KPS  855
            KP 
Sbjct  58   KPD  60



Lambda      K        H        a         alpha
   0.307    0.124    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0778    0.140     1.90     42.6     43.6 

Effective search space used: 1807475800


Query= TCONS_00017880

Length=1475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397130 pfam02854, MIF4G, MIF4G domain. MIF4G is named after M...  134     4e-36
CDD:432365 pfam12152, eIF_4G1, Eukaryotic translation initiation ...  94.2    6e-24


>CDD:397130 pfam02854, MIF4G, MIF4G domain.  MIF4G is named after Middle 
domain of eukaryotic initiation factor 4G (eIF4G). Also occurs 
in NMD2p and CBP80. The domain is rich in alpha-helices and 
may contain multiple alpha-helical repeats. In eIF4G, this 
domain binds eIF4A, eIF3, RNA and DNA.
Length=203

 Score = 134 bits (339),  Expect = 4e-36, Method: Composition-based stats.
 Identities = 77/238 (32%), Positives = 116/238 (49%), Gaps = 51/238 (21%)

Query  1026  QRKVKAALNKMTPENFDRISGQILEIVSQSKDESDGRTLRQVIQLTFEKATDEAHWASIY  1085
              +KVK  LNK++PENF+++  ++L++       SD   L+ +I+L FEKA +E ++   Y
Sbjct  1     LKKVKGILNKLSPENFEKLIKELLKL-----IMSDPELLKYLIELIFEKAVEEPNFIPAY  55

Query  1086  AKFCKRMLESMSPEIKDENIRDKNGNVVTGGSLFRKYLLNRCQEEFERGWKVNLPPKPEG  1145
             A+ C  +    +                   + F  +LLNR QEEFE         K   
Sbjct  56    ARLCSGL----NLRNP---------------TDFGIHLLNRLQEEFE---------KRFE  87

Query  1146  TTEEAAMLSDEYYAAAAAKRRGLGLVKFIGELYKLGMLTERIMHECVKKLVDY----EGM  1201
               E               +RR LGLV+F+GELYK G+LTE+I+ EC+K+L+      +  
Sbjct  88    LEENEQG----------NRRRRLGLVRFLGELYKFGLLTEKILFECLKELLSSLTKEDLK  137

Query  1202  PEEAEVESLTSLLRTIGASLDASERGHTFMDAYFARINMMMDIPG---LPSRLRFMLM  1256
              +   +E L +LL TIG  L+ +E+    MD +   I   +       L SRLRFML 
Sbjct  138   RDLFNLECLLTLLTTIGKLLE-NEKLPKLMDQFLDEIQKYVLSKDDPKLSSRLRFMLQ  194


>CDD:432365 pfam12152, eIF_4G1, Eukaryotic translation initiation factor 
4G1.  This domain is found in eukaryotes, and is about 80 amino 
acids in length. It is found in association with pfam02854. 
This domain is part of the protein eIF_4G. It binds to eIF_4E 
by wrapping around its N terminal to form the eIF_4F complex. 
This complex binds various eIF_4E-BPs (binding proteins) 
to regulate initiation of translation.
Length=60

 Score = 94.2 bits (235),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 42/63 (67%), Gaps = 3/63 (5%)

Query  793  QPSAAMKSLQSARFVDDLSKINYPPSIVSPNPALNANAPADRKFHYNKEFLLQFQSVFKE  852
             PSA ++SL+SAR ++D+    YP  I SP+PALN  A    K+ Y+ +FLLQF+ V KE
Sbjct  1    TPSAFLESLKSARPIEDIYSFKYPEGIESPDPALNKEA---VKYRYDPDFLLQFKDVVKE  57

Query  853  KPS  855
            KP 
Sbjct  58   KPD  60



Lambda      K        H        a         alpha
   0.307    0.124    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1867179712


Query= TCONS_00011742

Length=1525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397130 pfam02854, MIF4G, MIF4G domain. MIF4G is named after M...  143     3e-39
CDD:432365 pfam12152, eIF_4G1, Eukaryotic translation initiation ...  94.2    7e-24


>CDD:397130 pfam02854, MIF4G, MIF4G domain.  MIF4G is named after Middle 
domain of eukaryotic initiation factor 4G (eIF4G). Also occurs 
in NMD2p and CBP80. The domain is rich in alpha-helices and 
may contain multiple alpha-helical repeats. In eIF4G, this 
domain binds eIF4A, eIF3, RNA and DNA.
Length=203

 Score = 143 bits (363),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 80/245 (33%), Positives = 122/245 (50%), Gaps = 51/245 (21%)

Query  1095  QRKVKAALNKMTPENFDRISGQILEIVSQSKDESDGRTLRQVIQLTFEKATDEAHWASIY  1154
              +KVK  LNK++PENF+++  ++L++       SD   L+ +I+L FEKA +E ++   Y
Sbjct  1     LKKVKGILNKLSPENFEKLIKELLKL-----IMSDPELLKYLIELIFEKAVEEPNFIPAY  55

Query  1155  AKFCKRMLESMSPEIKDENIRDKNGNVVTGGSLFRKYLLNRCQEEFERGWKVNLPPKPEG  1214
             A+ C  +    +                   + F  +LLNR QEEFE         K   
Sbjct  56    ARLCSGL----NLRNP---------------TDFGIHLLNRLQEEFE---------KRFE  87

Query  1215  TTEEAAMLSDEYYAAAAAKRRGLGLVKFIGELYKLGMLTERIMHECVKKLVDY----EGM  1270
               E               +RR LGLV+F+GELYK G+LTE+I+ EC+K+L+      +  
Sbjct  88    LEENEQG----------NRRRRLGLVRFLGELYKFGLLTEKILFECLKELLSSLTKEDLK  137

Query  1271  PEEAEVESLTSLLRTIGASLDASERGHTFMDAYFARINMMMDIPG---LPSRLRFMLMDI  1327
              +   +E L +LL TIG  L+ +E+    MD +   I   +       L SRLRFML D+
Sbjct  138   RDLFNLECLLTLLTTIGKLLE-NEKLPKLMDQFLDEIQKYVLSKDDPKLSSRLRFMLQDL  196

Query  1328  VDLRN  1332
             ++LR 
Sbjct  197   IELRK  201


>CDD:432365 pfam12152, eIF_4G1, Eukaryotic translation initiation factor 
4G1.  This domain is found in eukaryotes, and is about 80 amino 
acids in length. It is found in association with pfam02854. 
This domain is part of the protein eIF_4G. It binds to eIF_4E 
by wrapping around its N terminal to form the eIF_4F complex. 
This complex binds various eIF_4E-BPs (binding proteins) 
to regulate initiation of translation.
Length=60

 Score = 94.2 bits (235),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 42/63 (67%), Gaps = 3/63 (5%)

Query  862  QPSAAMKSLQSARFVDDLSKINYPPSIVSPNPALNANAPADRKFHYNKEFLLQFQSVFKE  921
             PSA ++SL+SAR ++D+    YP  I SP+PALN  A    K+ Y+ +FLLQF+ V KE
Sbjct  1    TPSAFLESLKSARPIEDIYSFKYPEGIESPDPALNKEA---VKYRYDPDFLLQFKDVVKE  57

Query  922  KPS  924
            KP 
Sbjct  58   KPD  60



Lambda      K        H        a         alpha
   0.307    0.124    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1935027812


Query= TCONS_00011743

Length=277


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.123    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00017881

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.146    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00011744

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.118    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00011745

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395098 pfam00150, Cellulase, Cellulase (glycosyl hydrolase fa...  80.1    3e-18
CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain          62.8    3e-14


>CDD:395098 pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5). 
 
Length=272

 Score = 80.1 bits (198),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 28/81 (35%), Positives = 37/81 (46%), Gaps = 1/81 (1%)

Query  1    MHQYLDSDGSGTSESCVSSTIGQERVESATQWLKDNSLKGFLGEFAGG-VNSQCETAVEG  59
            +H Y  SD SGT   C   T   +R+ +A  W  DN +  F+GEF GG  +  C    E 
Sbjct  192  VHFYAPSDFSGTWFDCEDPTNLAQRLRAAANWALDNGIPVFIGEFGGGNADGPCRDEAEK  251

Query  60   LLSYMSENSDVWLGAEWWSAG  80
             L Y+ EN   W G    +  
Sbjct  252  WLDYLKENGISWTGWSNGNKS  272


>CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain.  
Length=29

 Score = 62.8 bits (154),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 23/29 (79%), Positives = 23/29 (79%), Gaps = 0/29 (0%)

Query  222  HWYQCGGINWTGPTTCESGYTCVEQNPYY  250
             W QCGGI WTGPTTC SGYTCV QN YY
Sbjct  1    LWGQCGGIGWTGPTTCASGYTCVYQNDYY  29



Lambda      K        H        a         alpha
   0.304    0.117    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00011746

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461729 pfam05742, TANGO2, Transport and Golgi organisation 2....  185     7e-59


>CDD:461729 pfam05742, TANGO2, Transport and Golgi organisation 2.  In eukaryotes 
this family is predicted to play a role in protein 
secretion and Golgi organisation. In plants this family includes 
Solanum habrochaites Cwp, which is involved in water permeability 
in the cuticles of fruit. Mouse Tango2 has been found 
to be expressed during early embryogenesis in mice. This 
protein contains a conserved NRDE motif. This gene has been 
characterized in Drosophila melanogaster and named as transport 
and Golgi organisation 2, hence the name Tango2.
Length=255

 Score = 185 bits (473),  Expect = 7e-59, Method: Composition-based stats.
 Identities = 82/249 (33%), Positives = 115/249 (46%), Gaps = 54/249 (22%)

Query  1    MGVTKEGKIAVLTNYRETTADEPSGVH--SRGLIVNSWLTADPEHKQSTRDFVQGMVASS  58
            +G+TK+G+IA LTNYRE ++  P  V   SRGL+VN +LT++P+ ++   +  +      
Sbjct  57   LGITKQGRIAALTNYREPSSGPPDAVGARSRGLLVNDFLTSNPDPEEYLEELAK------  110

Query  59   EIKHVGGFSLVCGYVNE--PLAIVSNRSANMDEISWVATEKGQTLGLSNTTFGDRSWPKI  116
            E     GF+L+ G +N    LA +SNR     +            GLSN+   D  WPK+
Sbjct  111  EADKYNGFNLLVGDLNGSKSLAYISNRGNPTPDQLSP-----GIHGLSNSLL-DSPWPKV  164

Query  117  LDGEKLMNEAINAHVQAGEDEDQLINRLLQVLSRDTLPRLSGDATMDTYLLLLRQSIFVP  176
              G++L  E +   V+    EDQLI  L  +LS DTLPR             L  SIF+P
Sbjct  165  ERGKRLFEELVEESVED--SEDQLIEELFDLLSDDTLPRDPELPDTGPEWERLLSSIFIP  222

Query  177  VIGAQAEKPRAADEVAAARDTDRVPVESQPPHDSLDKSFLQGAYGTQKQTVVLVSANGRV  236
             I                                       G YGT+ QTV+LV  +G+V
Sbjct  223  PIPP------------------------------------GGRYGTRSQTVILVDKDGKV  246

Query  237  RYFERTLYD  245
             + ERTLYD
Sbjct  247  TFIERTLYD  255



Lambda      K        H        a         alpha
   0.315    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00011747

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461729 pfam05742, TANGO2, Transport and Golgi organisation 2....  185     7e-59


>CDD:461729 pfam05742, TANGO2, Transport and Golgi organisation 2.  In eukaryotes 
this family is predicted to play a role in protein 
secretion and Golgi organisation. In plants this family includes 
Solanum habrochaites Cwp, which is involved in water permeability 
in the cuticles of fruit. Mouse Tango2 has been found 
to be expressed during early embryogenesis in mice. This 
protein contains a conserved NRDE motif. This gene has been 
characterized in Drosophila melanogaster and named as transport 
and Golgi organisation 2, hence the name Tango2.
Length=255

 Score = 185 bits (473),  Expect = 7e-59, Method: Composition-based stats.
 Identities = 82/249 (33%), Positives = 115/249 (46%), Gaps = 54/249 (22%)

Query  1    MGVTKEGKIAVLTNYRETTADEPSGVH--SRGLIVNSWLTADPEHKQSTRDFVQGMVASS  58
            +G+TK+G+IA LTNYRE ++  P  V   SRGL+VN +LT++P+ ++   +  +      
Sbjct  57   LGITKQGRIAALTNYREPSSGPPDAVGARSRGLLVNDFLTSNPDPEEYLEELAK------  110

Query  59   EIKHVGGFSLVCGYVNE--PLAIVSNRSANMDEISWVATEKGQTLGLSNTTFGDRSWPKI  116
            E     GF+L+ G +N    LA +SNR     +            GLSN+   D  WPK+
Sbjct  111  EADKYNGFNLLVGDLNGSKSLAYISNRGNPTPDQLSP-----GIHGLSNSLL-DSPWPKV  164

Query  117  LDGEKLMNEAINAHVQAGEDEDQLINRLLQVLSRDTLPRLSGDATMDTYLLLLRQSIFVP  176
              G++L  E +   V+    EDQLI  L  +LS DTLPR             L  SIF+P
Sbjct  165  ERGKRLFEELVEESVED--SEDQLIEELFDLLSDDTLPRDPELPDTGPEWERLLSSIFIP  222

Query  177  VIGAQAEKPRAADEVAAARDTDRVPVESQPPHDSLDKSFLQGAYGTQKQTVVLVSANGRV  236
             I                                       G YGT+ QTV+LV  +G+V
Sbjct  223  PIPP------------------------------------GGRYGTRSQTVILVDKDGKV  246

Query  237  RYFERTLYD  245
             + ERTLYD
Sbjct  247  TFIERTLYD  255



Lambda      K        H        a         alpha
   0.315    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00011748

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00011749

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461729 pfam05742, TANGO2, Transport and Golgi organisation 2....  185     7e-59


>CDD:461729 pfam05742, TANGO2, Transport and Golgi organisation 2.  In eukaryotes 
this family is predicted to play a role in protein 
secretion and Golgi organisation. In plants this family includes 
Solanum habrochaites Cwp, which is involved in water permeability 
in the cuticles of fruit. Mouse Tango2 has been found 
to be expressed during early embryogenesis in mice. This 
protein contains a conserved NRDE motif. This gene has been 
characterized in Drosophila melanogaster and named as transport 
and Golgi organisation 2, hence the name Tango2.
Length=255

 Score = 185 bits (473),  Expect = 7e-59, Method: Composition-based stats.
 Identities = 82/249 (33%), Positives = 115/249 (46%), Gaps = 54/249 (22%)

Query  1    MGVTKEGKIAVLTNYRETTADEPSGVH--SRGLIVNSWLTADPEHKQSTRDFVQGMVASS  58
            +G+TK+G+IA LTNYRE ++  P  V   SRGL+VN +LT++P+ ++   +  +      
Sbjct  57   LGITKQGRIAALTNYREPSSGPPDAVGARSRGLLVNDFLTSNPDPEEYLEELAK------  110

Query  59   EIKHVGGFSLVCGYVNE--PLAIVSNRSANMDEISWVATEKGQTLGLSNTTFGDRSWPKI  116
            E     GF+L+ G +N    LA +SNR     +            GLSN+   D  WPK+
Sbjct  111  EADKYNGFNLLVGDLNGSKSLAYISNRGNPTPDQLSP-----GIHGLSNSLL-DSPWPKV  164

Query  117  LDGEKLMNEAINAHVQAGEDEDQLINRLLQVLSRDTLPRLSGDATMDTYLLLLRQSIFVP  176
              G++L  E +   V+    EDQLI  L  +LS DTLPR             L  SIF+P
Sbjct  165  ERGKRLFEELVEESVED--SEDQLIEELFDLLSDDTLPRDPELPDTGPEWERLLSSIFIP  222

Query  177  VIGAQAEKPRAADEVAAARDTDRVPVESQPPHDSLDKSFLQGAYGTQKQTVVLVSANGRV  236
             I                                       G YGT+ QTV+LV  +G+V
Sbjct  223  PIPP------------------------------------GGRYGTRSQTVILVDKDGKV  246

Query  237  RYFERTLYD  245
             + ERTLYD
Sbjct  247  TFIERTLYD  255



Lambda      K        H        a         alpha
   0.315    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00017882

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461729 pfam05742, TANGO2, Transport and Golgi organisation 2....  185     7e-59


>CDD:461729 pfam05742, TANGO2, Transport and Golgi organisation 2.  In eukaryotes 
this family is predicted to play a role in protein 
secretion and Golgi organisation. In plants this family includes 
Solanum habrochaites Cwp, which is involved in water permeability 
in the cuticles of fruit. Mouse Tango2 has been found 
to be expressed during early embryogenesis in mice. This 
protein contains a conserved NRDE motif. This gene has been 
characterized in Drosophila melanogaster and named as transport 
and Golgi organisation 2, hence the name Tango2.
Length=255

 Score = 185 bits (473),  Expect = 7e-59, Method: Composition-based stats.
 Identities = 82/249 (33%), Positives = 115/249 (46%), Gaps = 54/249 (22%)

Query  1    MGVTKEGKIAVLTNYRETTADEPSGVH--SRGLIVNSWLTADPEHKQSTRDFVQGMVASS  58
            +G+TK+G+IA LTNYRE ++  P  V   SRGL+VN +LT++P+ ++   +  +      
Sbjct  57   LGITKQGRIAALTNYREPSSGPPDAVGARSRGLLVNDFLTSNPDPEEYLEELAK------  110

Query  59   EIKHVGGFSLVCGYVNE--PLAIVSNRSANMDEISWVATEKGQTLGLSNTTFGDRSWPKI  116
            E     GF+L+ G +N    LA +SNR     +            GLSN+   D  WPK+
Sbjct  111  EADKYNGFNLLVGDLNGSKSLAYISNRGNPTPDQLSP-----GIHGLSNSLL-DSPWPKV  164

Query  117  LDGEKLMNEAINAHVQAGEDEDQLINRLLQVLSRDTLPRLSGDATMDTYLLLLRQSIFVP  176
              G++L  E +   V+    EDQLI  L  +LS DTLPR             L  SIF+P
Sbjct  165  ERGKRLFEELVEESVED--SEDQLIEELFDLLSDDTLPRDPELPDTGPEWERLLSSIFIP  222

Query  177  VIGAQAEKPRAADEVAAARDTDRVPVESQPPHDSLDKSFLQGAYGTQKQTVVLVSANGRV  236
             I                                       G YGT+ QTV+LV  +G+V
Sbjct  223  PIPP------------------------------------GGRYGTRSQTVILVDKDGKV  246

Query  237  RYFERTLYD  245
             + ERTLYD
Sbjct  247  TFIERTLYD  255



Lambda      K        H        a         alpha
   0.315    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00011750

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  180     8e-52


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 180 bits (460),  Expect = 8e-52, Method: Composition-based stats.
 Identities = 117/436 (27%), Positives = 187/436 (43%), Gaps = 55/436 (13%)

Query  75   MSDREGRYVTTFRFRQMGRENYFTTDPKNIQAILATQFKDFELGAPRR----QALHPLLG  130
             +  + +Y   FR     +     + P+ ++ +L  + ++F  G P       +  P LG
Sbjct  26   FTKLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFS-GRPDEPWFATSRGPFLG  84

Query  131  AGIFSSDGEEWFHARGLLRPQFTRDQISDLDLEERHVQKAMQAM-----PVVNGKWTDAV  185
             GI  ++G  W   R  L P FT      L  E R V++  + +               +
Sbjct  85   KGIVFANGPRWRQLRRFLTPTFTSFGK--LSFEPR-VEEEARDLVEKLRKTAGEPGV--I  139

Query  186  DIQSIFFRLTIDSATEFLFGESVESQ-----LSALNGGQTPVDTFPYYFDKSQWYAAQRA  240
            DI  + FR  ++     LFGE   S      L  +   Q             Q       
Sbjct  140  DITDLLFRAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPS--PQLLDLFPI  197

Query  241  RFEKLYWIVNNKECRHAQNEVHAYVDRVVHKALKAAREGKLANPNKPSQYVFLHALVSVT  300
                       ++ + A+ ++   +D+++ +     R   L +  K S   FL AL+   
Sbjct  198  LKYFPGPH--GRKLKRARKKIKDLLDKLIEE-----RRETL-DSAKKSPRDFLDALLLAK  249

Query  301  QDPI-------ELRSQLLNILLAGRDTTASLLSWTVLMLARHPAEFHKLRQTIVDEFGTY  353
            ++         ELR+ +L +  AG DTT+S LSW +  LA+HP    KLR+ I +  G  
Sbjct  250  EEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIG--  307

Query  354  DQPRNITFAALKSCQYLQYCLNETLRLFPVVPGNR-RSATRDTTLPRGGGSDGTQPIYIR  412
               R+ T+  L++  YL   + ETLRL PVVP    R  T+DT +P      G     I 
Sbjct  308  -DKRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIP------G---YLIP  357

Query  413  KGQTVVYNVHILHRRKDIWGPDAEEFKPSRWVDRKVG----WDYVPFNGGPRICIGQQFA  468
            KG  V+ N++ LHR  +++ P+ EEF P R++D        + ++PF  GPR C+G++ A
Sbjct  358  KGTLVIVNLYALHRDPEVF-PNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERLA  416

Query  469  LTEAGYVLVRLLQRFD  484
              E    L  LLQ F+
Sbjct  417  RMEMKLFLATLLQNFE  432



Lambda      K        H        a         alpha
   0.322    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00011751

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  180     8e-52


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 180 bits (460),  Expect = 8e-52, Method: Composition-based stats.
 Identities = 117/436 (27%), Positives = 187/436 (43%), Gaps = 55/436 (13%)

Query  75   MSDREGRYVTTFRFRQMGRENYFTTDPKNIQAILATQFKDFELGAPRR----QALHPLLG  130
             +  + +Y   FR     +     + P+ ++ +L  + ++F  G P       +  P LG
Sbjct  26   FTKLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFS-GRPDEPWFATSRGPFLG  84

Query  131  AGIFSSDGEEWFHARGLLRPQFTRDQISDLDLEERHVQKAMQAM-----PVVNGKWTDAV  185
             GI  ++G  W   R  L P FT      L  E R V++  + +               +
Sbjct  85   KGIVFANGPRWRQLRRFLTPTFTSFGK--LSFEPR-VEEEARDLVEKLRKTAGEPGV--I  139

Query  186  DIQSIFFRLTIDSATEFLFGESVESQ-----LSALNGGQTPVDTFPYYFDKSQWYAAQRA  240
            DI  + FR  ++     LFGE   S      L  +   Q             Q       
Sbjct  140  DITDLLFRAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPS--PQLLDLFPI  197

Query  241  RFEKLYWIVNNKECRHAQNEVHAYVDRVVHKALKAAREGKLANPNKPSQYVFLHALVSVT  300
                       ++ + A+ ++   +D+++ +     R   L +  K S   FL AL+   
Sbjct  198  LKYFPGPH--GRKLKRARKKIKDLLDKLIEE-----RRETL-DSAKKSPRDFLDALLLAK  249

Query  301  QDPI-------ELRSQLLNILLAGRDTTASLLSWTVLMLARHPAEFHKLRQTIVDEFGTY  353
            ++         ELR+ +L +  AG DTT+S LSW +  LA+HP    KLR+ I +  G  
Sbjct  250  EEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIG--  307

Query  354  DQPRNITFAALKSCQYLQYCLNETLRLFPVVPGNR-RSATRDTTLPRGGGSDGTQPIYIR  412
               R+ T+  L++  YL   + ETLRL PVVP    R  T+DT +P      G     I 
Sbjct  308  -DKRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIP------G---YLIP  357

Query  413  KGQTVVYNVHILHRRKDIWGPDAEEFKPSRWVDRKVG----WDYVPFNGGPRICIGQQFA  468
            KG  V+ N++ LHR  +++ P+ EEF P R++D        + ++PF  GPR C+G++ A
Sbjct  358  KGTLVIVNLYALHRDPEVF-PNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERLA  416

Query  469  LTEAGYVLVRLLQRFD  484
              E    L  LLQ F+
Sbjct  417  RMEMKLFLATLLQNFE  432



Lambda      K        H        a         alpha
   0.322    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00011752

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  162     2e-46


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 162 bits (411),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 93/317 (29%), Positives = 144/317 (45%), Gaps = 40/317 (13%)

Query  15   VDIQSIFFRLTIDSATEFLFGESVESQ-----LSALNGGQTPVDTFPYYFDKSQWYAAQR  69
            +DI  + FR  ++     LFGE   S      L  +   Q             Q      
Sbjct  139  IDITDLLFRAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPS--PQLLDLFP  196

Query  70   ARFEKLYWIVNNKECRHAQNEVHAYVDRVVHKALKAAREGKLANPNKPSQYVFLHALVSV  129
                        ++ + A+ ++   +D+++ +     R   L +  K S   FL AL+  
Sbjct  197  ILKYFPGPH--GRKLKRARKKIKDLLDKLIEE-----RRETL-DSAKKSPRDFLDALLLA  248

Query  130  TQDPI-------ELRSQLLNILLAGRDTTASLLSWTVLMLARHPAEFHKLRQTIVDEFGT  182
             ++         ELR+ +L +  AG DTT+S LSW +  LA+HP    KLR+ I +  G 
Sbjct  249  KEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIG-  307

Query  183  YDQPRNITFAALKSCQYLQYCLNETLRLFPVVPGNR-RSATRDTTLPRGGGSDGTQPIYI  241
                R+ T+  L++  YL   + ETLRL PVVP    R  T+DT +P      G     I
Sbjct  308  --DKRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIP------G---YLI  356

Query  242  RKGQTVVYNVHILHRRKDIWGPDAEEFKPSRWVDRKVG----WDYVPFNGGPRICIGQQF  297
             KG  V+ N++ LHR  +++ P+ EEF P R++D        + ++PF  GPR C+G++ 
Sbjct  357  PKGTLVIVNLYALHRDPEVF-PNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERL  415

Query  298  ALTEAGYVLVRLLQRFD  314
            A  E    L  LLQ F+
Sbjct  416  ARMEMKLFLATLLQNFE  432



Lambda      K        H        a         alpha
   0.322    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00011753

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  162     2e-46


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 162 bits (411),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 93/317 (29%), Positives = 144/317 (45%), Gaps = 40/317 (13%)

Query  15   VDIQSIFFRLTIDSATEFLFGESVESQ-----LSALNGGQTPVDTFPYYFDKSQWYAAQR  69
            +DI  + FR  ++     LFGE   S      L  +   Q             Q      
Sbjct  139  IDITDLLFRAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPS--PQLLDLFP  196

Query  70   ARFEKLYWIVNNKECRHAQNEVHAYVDRVVHKALKAAREGKLANPNKPSQYVFLHALVSV  129
                        ++ + A+ ++   +D+++ +     R   L +  K S   FL AL+  
Sbjct  197  ILKYFPGPH--GRKLKRARKKIKDLLDKLIEE-----RRETL-DSAKKSPRDFLDALLLA  248

Query  130  TQDPI-------ELRSQLLNILLAGRDTTASLLSWTVLMLARHPAEFHKLRQTIVDEFGT  182
             ++         ELR+ +L +  AG DTT+S LSW +  LA+HP    KLR+ I +  G 
Sbjct  249  KEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIG-  307

Query  183  YDQPRNITFAALKSCQYLQYCLNETLRLFPVVPGNR-RSATRDTTLPRGGGSDGTQPIYI  241
                R+ T+  L++  YL   + ETLRL PVVP    R  T+DT +P      G     I
Sbjct  308  --DKRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIP------G---YLI  356

Query  242  RKGQTVVYNVHILHRRKDIWGPDAEEFKPSRWVDRKVG----WDYVPFNGGPRICIGQQF  297
             KG  V+ N++ LHR  +++ P+ EEF P R++D        + ++PF  GPR C+G++ 
Sbjct  357  PKGTLVIVNLYALHRDPEVF-PNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERL  415

Query  298  ALTEAGYVLVRLLQRFD  314
            A  E    L  LLQ F+
Sbjct  416  ARMEMKLFLATLLQNFE  432



Lambda      K        H        a         alpha
   0.322    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00017884

Length=955
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459999 pfam00924, MS_channel, Mechanosensitive ion channel. T...  88.4    2e-20


>CDD:459999 pfam00924, MS_channel, Mechanosensitive ion channel.  Two members 
of this protein family of M. jannaschii have been functionally 
characterized. Both proteins form mechanosensitive (MS) 
ion channels upon reconstitution into liposomes and functional 
examination by the patch-clamp technique. Therefore this 
family are likely to also be MS channel proteins.
Length=203

 Score = 88.4 bits (220),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 48/203 (24%), Positives = 85/203 (42%), Gaps = 12/203 (6%)

Query  487  LDNLLLTVAGIIAVLVFISFVTSGFGTVIAAGATSLLSLSFVFATTAQEVLGSCIFLFVK  546
            +   L+ V GI+ VL ++    S     +A      L+L F        ++   I LF K
Sbjct  3    ILKYLIIVVGILIVLSYLGVNVSAL---LAGLGALGLALGFALQDLVSNLVSGIIILFEK  59

Query  547  HPFDIGDRVEISDKDYIVERISLLYTVFKSVTDQRVTQVPNVVLNTLWVDNFTRSNAMHE  606
             PF IGD +EI D +  VE I L  T  ++  D R+  +PN  + T  + N++RS     
Sbjct  60   -PFKIGDWIEIGDIEGTVEDIGLRTTTIRT-FDGRLVTIPNSSILTSNIINYSRSPTRRV  117

Query  607  TLKIPVSFDTTFADIQLLRDEMERFVRDKEN-YRDFQPDVDLDVVGVGDMDKLELTVSIR  665
             L I V++ +    ++ + + ++    +     +D +P V     G      L   + + 
Sbjct  118  ELSIGVAYSSDPDKLEKVIEILKEAAYEHPLVLKDPEPPVVFGEFGD---SSLNFELRVW  174

Query  666  HKSNWANE-SIRA--MRRSKFMC  685
             K+      ++R+    R K   
Sbjct  175  VKTLPGEYFNVRSELNLRIKKAL  197



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1216237484


Query= TCONS_00011755

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462915 pfam09825, BPL_N, Biotin-protein ligase, N terminal. T...  508     0.0  


>CDD:462915 pfam09825, BPL_N, Biotin-protein ligase, N terminal.  The function 
of this structural domain is unknown. It is found to the 
N-terminus of the biotin protein ligase catalytic domain.
Length=277

 Score = 508 bits (1312),  Expect = 0.0, Method: Composition-based stats.
 Identities = 197/312 (63%), Positives = 222/312 (71%), Gaps = 47/312 (15%)

Query  13   LNVLVYSGSLTQSAWRSTSLTSSPPSPGNGSTVESVRHCLYTLRRLLAPHYAVIPVTADM  72
            +NVLVYSG                     G+T ESVRH L TLRRLL+P+YAVIPV+A +
Sbjct  1    MNVLVYSG--------------------PGTTPESVRHTLETLRRLLSPYYAVIPVSAKV  40

Query  73   LIKEPWTLTCALLVIPGGADLGYCRSLNGTGNRRIEQFVKRGGAYLGFCAGGYYGSKRCE  132
            L+KEPWT  CALLV PGGADL YCR LNG GNRRI+QFV+RGGAYLGFCAGGYYGS RCE
Sbjct  41   LLKEPWTSKCALLVFPGGADLPYCRELNGEGNRRIKQFVRRGGAYLGFCAGGYYGSARCE  100

Query  133  FEVGDKTMEVVGDRELAFFPGICRGGAFPGFVYHSEVGARAADLKVSKDVLQDGVVPEGF  192
            FEVGD  +EVVG RELAFFPG CRG AFPGFVY+SE GARAA LKV+        VP+ F
Sbjct  101  FEVGDPKLEVVGPRELAFFPGTCRGPAFPGFVYNSEAGARAAKLKVNT-----SPVPDEF  155

Query  193  KCYYNGGGVFVDAPLYADRGVEVLASYTEELNVDPG-AGAAAVVYCKVGEGAAILTGPHP  251
            K YYNGGGVFVDA  YA+  VEVLA YTE+L+VD G  G AAVVYCKVG+G A+LTGPHP
Sbjct  156  KSYYNGGGVFVDADKYAN--VEVLARYTEDLDVDGGDGGPAAVVYCKVGKGKALLTGPHP  213

Query  252  EYVLSENSRGKLTDATNRFAAANLDK-KAGGEEYAKVVDALAADDKARTDFLRACLSKLG  310
            E                 FA +NL   +A G  Y KVVD LAAD+KAR +FLRACL+KLG
Sbjct  214  E-----------------FAPSNLKPQEADGPGYDKVVDELAADEKARLEFLRACLTKLG  256

Query  311  LQV-TQNTTTVP  321
            L+V  +  TTVP
Sbjct  257  LKVNEEEETTVP  268



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581273816


Query= TCONS_00011756

Length=723
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459999 pfam00924, MS_channel, Mechanosensitive ion channel. T...  89.6    6e-21


>CDD:459999 pfam00924, MS_channel, Mechanosensitive ion channel.  Two members 
of this protein family of M. jannaschii have been functionally 
characterized. Both proteins form mechanosensitive (MS) 
ion channels upon reconstitution into liposomes and functional 
examination by the patch-clamp technique. Therefore this 
family are likely to also be MS channel proteins.
Length=203

 Score = 89.6 bits (223),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 48/203 (24%), Positives = 85/203 (42%), Gaps = 12/203 (6%)

Query  255  LDNLLLTVAGIIAVLVFISFVTSGFGTVIAAGATSLLSLSFVFATTAQEVLGSCIFLFVK  314
            +   L+ V GI+ VL ++    S     +A      L+L F        ++   I LF K
Sbjct  3    ILKYLIIVVGILIVLSYLGVNVSAL---LAGLGALGLALGFALQDLVSNLVSGIIILFEK  59

Query  315  HPFDIGDRVEISDKDYIVERISLLYTVFKSVTDQRVTQVPNVVLNTLWVDNFTRSNAMHE  374
             PF IGD +EI D +  VE I L  T  ++  D R+  +PN  + T  + N++RS     
Sbjct  60   -PFKIGDWIEIGDIEGTVEDIGLRTTTIRT-FDGRLVTIPNSSILTSNIINYSRSPTRRV  117

Query  375  TLKIPVSFDTTFADIQLLRDEMERFVRDKEN-YRDFQPDVDLDVVGVGDMDKLELTVSIR  433
             L I V++ +    ++ + + ++    +     +D +P V     G      L   + + 
Sbjct  118  ELSIGVAYSSDPDKLEKVIEILKEAAYEHPLVLKDPEPPVVFGEFGD---SSLNFELRVW  174

Query  434  HKSNWANE-SIRA--MRRSKFMC  453
             K+      ++R+    R K   
Sbjct  175  VKTLPGEYFNVRSELNLRIKKAL  197



Lambda      K        H        a         alpha
   0.316    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 915290608


Query= TCONS_00011757

Length=955
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459999 pfam00924, MS_channel, Mechanosensitive ion channel. T...  88.4    2e-20


>CDD:459999 pfam00924, MS_channel, Mechanosensitive ion channel.  Two members 
of this protein family of M. jannaschii have been functionally 
characterized. Both proteins form mechanosensitive (MS) 
ion channels upon reconstitution into liposomes and functional 
examination by the patch-clamp technique. Therefore this 
family are likely to also be MS channel proteins.
Length=203

 Score = 88.4 bits (220),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 48/203 (24%), Positives = 85/203 (42%), Gaps = 12/203 (6%)

Query  487  LDNLLLTVAGIIAVLVFISFVTSGFGTVIAAGATSLLSLSFVFATTAQEVLGSCIFLFVK  546
            +   L+ V GI+ VL ++    S     +A      L+L F        ++   I LF K
Sbjct  3    ILKYLIIVVGILIVLSYLGVNVSAL---LAGLGALGLALGFALQDLVSNLVSGIIILFEK  59

Query  547  HPFDIGDRVEISDKDYIVERISLLYTVFKSVTDQRVTQVPNVVLNTLWVDNFTRSNAMHE  606
             PF IGD +EI D +  VE I L  T  ++  D R+  +PN  + T  + N++RS     
Sbjct  60   -PFKIGDWIEIGDIEGTVEDIGLRTTTIRT-FDGRLVTIPNSSILTSNIINYSRSPTRRV  117

Query  607  TLKIPVSFDTTFADIQLLRDEMERFVRDKEN-YRDFQPDVDLDVVGVGDMDKLELTVSIR  665
             L I V++ +    ++ + + ++    +     +D +P V     G      L   + + 
Sbjct  118  ELSIGVAYSSDPDKLEKVIEILKEAAYEHPLVLKDPEPPVVFGEFGD---SSLNFELRVW  174

Query  666  HKSNWANE-SIRA--MRRSKFMC  685
             K+      ++R+    R K   
Sbjct  175  VKTLPGEYFNVRSELNLRIKKAL  197



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 1216237484


Query= TCONS_00011758

Length=955
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459999 pfam00924, MS_channel, Mechanosensitive ion channel. T...  88.4    2e-20


>CDD:459999 pfam00924, MS_channel, Mechanosensitive ion channel.  Two members 
of this protein family of M. jannaschii have been functionally 
characterized. Both proteins form mechanosensitive (MS) 
ion channels upon reconstitution into liposomes and functional 
examination by the patch-clamp technique. Therefore this 
family are likely to also be MS channel proteins.
Length=203

 Score = 88.4 bits (220),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 48/203 (24%), Positives = 85/203 (42%), Gaps = 12/203 (6%)

Query  487  LDNLLLTVAGIIAVLVFISFVTSGFGTVIAAGATSLLSLSFVFATTAQEVLGSCIFLFVK  546
            +   L+ V GI+ VL ++    S     +A      L+L F        ++   I LF K
Sbjct  3    ILKYLIIVVGILIVLSYLGVNVSAL---LAGLGALGLALGFALQDLVSNLVSGIIILFEK  59

Query  547  HPFDIGDRVEISDKDYIVERISLLYTVFKSVTDQRVTQVPNVVLNTLWVDNFTRSNAMHE  606
             PF IGD +EI D +  VE I L  T  ++  D R+  +PN  + T  + N++RS     
Sbjct  60   -PFKIGDWIEIGDIEGTVEDIGLRTTTIRT-FDGRLVTIPNSSILTSNIINYSRSPTRRV  117

Query  607  TLKIPVSFDTTFADIQLLRDEMERFVRDKEN-YRDFQPDVDLDVVGVGDMDKLELTVSIR  665
             L I V++ +    ++ + + ++    +     +D +P V     G      L   + + 
Sbjct  118  ELSIGVAYSSDPDKLEKVIEILKEAAYEHPLVLKDPEPPVVFGEFGD---SSLNFELRVW  174

Query  666  HKSNWANE-SIRA--MRRSKFMC  685
             K+      ++R+    R K   
Sbjct  175  VKTLPGEYFNVRSELNLRIKKAL  197



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1216237484


Query= TCONS_00011759

Length=955
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459999 pfam00924, MS_channel, Mechanosensitive ion channel. T...  88.4    2e-20


>CDD:459999 pfam00924, MS_channel, Mechanosensitive ion channel.  Two members 
of this protein family of M. jannaschii have been functionally 
characterized. Both proteins form mechanosensitive (MS) 
ion channels upon reconstitution into liposomes and functional 
examination by the patch-clamp technique. Therefore this 
family are likely to also be MS channel proteins.
Length=203

 Score = 88.4 bits (220),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 48/203 (24%), Positives = 85/203 (42%), Gaps = 12/203 (6%)

Query  487  LDNLLLTVAGIIAVLVFISFVTSGFGTVIAAGATSLLSLSFVFATTAQEVLGSCIFLFVK  546
            +   L+ V GI+ VL ++    S     +A      L+L F        ++   I LF K
Sbjct  3    ILKYLIIVVGILIVLSYLGVNVSAL---LAGLGALGLALGFALQDLVSNLVSGIIILFEK  59

Query  547  HPFDIGDRVEISDKDYIVERISLLYTVFKSVTDQRVTQVPNVVLNTLWVDNFTRSNAMHE  606
             PF IGD +EI D +  VE I L  T  ++  D R+  +PN  + T  + N++RS     
Sbjct  60   -PFKIGDWIEIGDIEGTVEDIGLRTTTIRT-FDGRLVTIPNSSILTSNIINYSRSPTRRV  117

Query  607  TLKIPVSFDTTFADIQLLRDEMERFVRDKEN-YRDFQPDVDLDVVGVGDMDKLELTVSIR  665
             L I V++ +    ++ + + ++    +     +D +P V     G      L   + + 
Sbjct  118  ELSIGVAYSSDPDKLEKVIEILKEAAYEHPLVLKDPEPPVVFGEFGD---SSLNFELRVW  174

Query  666  HKSNWANE-SIRA--MRRSKFMC  685
             K+      ++R+    R K   
Sbjct  175  VKTLPGEYFNVRSELNLRIKKAL  197



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1216237484


Query= TCONS_00017885

Length=134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460730 pfam02873, MurB_C, UDP-N-acetylenolpyruvoylglucosamine...  96.6    8e-28


>CDD:460730 pfam02873, MurB_C, UDP-N-acetylenolpyruvoylglucosamine reductase, 
C-terminal domain.  Members of this family are UDP-N-acetylenolpyruvoylglucosamine 
reductase enzymes EC:1.1.1.158. 
This enzyme is involved in the biosynthesis of peptidoglycan.
Length=99

 Score = 96.6 bits (242),  Expect = 8e-28, Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 40/78 (51%), Gaps = 3/78 (4%)

Query  44   SVFLRADGSQVIPTAWLIERCGWKGRRIGRVGVYDQHALVIVYYGSVNGFDVLEFASRIR  103
            S F    G       WLIE+ G KG RIG   V ++HA  +V  G     DVL     +R
Sbjct  25   SFFKNPVGH---SAGWLIEQAGLKGYRIGGAQVSEKHANFLVNTGGATAADVLALIEEVR  81

Query  104  EGVMGRFGIWLEFEVRIV  121
            E V  +FG+ LE EVRI+
Sbjct  82   ERVKEKFGVELEPEVRII  99



Lambda      K        H        a         alpha
   0.327    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00011760

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00011762

Length=276


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00011763

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399029 pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH). Thi...  85.2    1e-19


>CDD:399029 pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH).  This family 
is made up of several eukaryotic phytanoyl-CoA dioxygenase 
(PhyH) proteins, ectoine hydroxylases and a number of bacterial 
deoxygenases. PhyH is a peroxisomal enzyme catalyzing 
the first step of phytanic acid alpha-oxidation. PhyH deficiency 
causes Refsum's disease (RD) which is an inherited neurological 
syndrome biochemically characterized by the accumulation 
of phytanic acid in plasma and tissues.
Length=213

 Score = 85.2 bits (211),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 73/220 (33%), Gaps = 34/220 (15%)

Query  76   GIVVLKGMYHPTHHGPTLTATTEAFAHIIAQERRTATKKGDHFAASGKNDR-----IWNS  130
            G +V++G   P      + A       ++ +   +   K D F      D         +
Sbjct  5    GYLVIEGFLSPE----EVAALRAEAERLLDRAAESGPDKDDFFDEKAAGDETGLLEKSIT  60

Query  131  FSKHALLDPRSFVAYYSNPWL-RLIAESWLGPAYRITAQVNIVNPGGAAQESHRDYHLGF  189
               H L  P              +   + L   Y+  +       GG     H+DY    
Sbjct  61   KRDHFL-HPFYLADLARAILGSPVYVANVLQSMYQDLSIFKQPGTGGEVSPWHQDYTFLP  119

Query  190  QAGTTTARFPRTLHLASQYLTLQGAVAHSDMPACSGPTRFLPFSQCFEPGYLAWRREEFR  249
                 T      +++          +A  D    +G  R +P S  +E G LA R  E  
Sbjct  120  -----TRPAELVVNVW---------IALDDATEENGCLRVIPGSHKWEVGPLARRLPEDD  165

Query  250  AFFQ---------ENYVALPLELGDGVFFNPAVFHAAGAN  280
             + +         E  V +P++ GD V F+P + H +GAN
Sbjct  166  YYAEDDEAPKRDEEPAVPVPMKAGDAVLFHPRLLHGSGAN  205



Lambda      K        H        a         alpha
   0.319    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00011764

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399029 pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH). Thi...  85.6    6e-20


>CDD:399029 pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH).  This family 
is made up of several eukaryotic phytanoyl-CoA dioxygenase 
(PhyH) proteins, ectoine hydroxylases and a number of bacterial 
deoxygenases. PhyH is a peroxisomal enzyme catalyzing 
the first step of phytanic acid alpha-oxidation. PhyH deficiency 
causes Refsum's disease (RD) which is an inherited neurological 
syndrome biochemically characterized by the accumulation 
of phytanic acid in plasma and tissues.
Length=213

 Score = 85.6 bits (212),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 73/220 (33%), Gaps = 34/220 (15%)

Query  116  GIVVLKGMYHPTHHGPTLTATTEAFAHIIAQERRTATKKGDHFAASGKNDR-----IWNS  170
            G +V++G   P      + A       ++ +   +   K D F      D         +
Sbjct  5    GYLVIEGFLSPE----EVAALRAEAERLLDRAAESGPDKDDFFDEKAAGDETGLLEKSIT  60

Query  171  FSKHALLDPRSFVAYYSNPWL-RLIAESWLGPAYRITAQVNIVNPGGAAQESHRDYHLGF  229
               H L  P              +   + L   Y+  +       GG     H+DY    
Sbjct  61   KRDHFL-HPFYLADLARAILGSPVYVANVLQSMYQDLSIFKQPGTGGEVSPWHQDYTFLP  119

Query  230  QAGTTTARFPRTLHLASQYLTLQGAVAHSDMPACSGPTRFLPFSQCFEPGYLAWRREEFR  289
                 T      +++          +A  D    +G  R +P S  +E G LA R  E  
Sbjct  120  -----TRPAELVVNVW---------IALDDATEENGCLRVIPGSHKWEVGPLARRLPEDD  165

Query  290  AFFQ---------ENYVALPLELGDGVFFNPAVFHAAGAN  320
             + +         E  V +P++ GD V F+P + H +GAN
Sbjct  166  YYAEDDEAPKRDEEPAVPVPMKAGDAVLFHPRLLHGSGAN  205



Lambda      K        H        a         alpha
   0.319    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00017886

Length=361


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00011769

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   69.0    4e-16
CDD:465355 pfam17123, zf-RING_11, RING-like zinc finger               54.1    1e-10


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 69.0 bits (169),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 25/45 (56%), Positives = 31/45 (69%), Gaps = 1/45 (2%)

Query  144  FSCPICTDDFIKGQDLRVLPCNHQFHPECIDPWLVNVSGTCPLCR  188
              CPIC ++F +G  + VLPC H FH EC+D WL + S TCPLCR
Sbjct  1    DECPICLEEFEEGDKVVVLPCGHHFHRECLDKWLRS-SNTCPLCR  44


>CDD:465355 pfam17123, zf-RING_11, RING-like zinc finger.  
Length=29

 Score = 54.1 bits (131),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 17/28 (61%), Positives = 20/28 (71%), Gaps = 0/28 (0%)

Query  146  CPICTDDFIKGQDLRVLPCNHQFHPECI  173
            C IC D+F  GQ L VLPC+H FH +CI
Sbjct  2    CSICLDEFKPGQALFVLPCSHVFHYKCI  29



Lambda      K        H        a         alpha
   0.315    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00011765

Length=241


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00011767

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   73.6    3e-17
CDD:465355 pfam17123, zf-RING_11, RING-like zinc finger               55.2    7e-11


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 73.6 bits (181),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 25/45 (56%), Positives = 31/45 (69%), Gaps = 1/45 (2%)

Query  371  FSCPICTDDFIKGQDLRVLPCNHQFHPECIDPWLVNVSGTCPLCR  415
              CPIC ++F +G  + VLPC H FH EC+D WL + S TCPLCR
Sbjct  1    DECPICLEEFEEGDKVVVLPCGHHFHRECLDKWLRS-SNTCPLCR  44


>CDD:465355 pfam17123, zf-RING_11, RING-like zinc finger.  
Length=29

 Score = 55.2 bits (134),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 17/28 (61%), Positives = 20/28 (71%), Gaps = 0/28 (0%)

Query  373  CPICTDDFIKGQDLRVLPCNHQFHPECI  400
            C IC D+F  GQ L VLPC+H FH +CI
Sbjct  2    CSICLDEFKPGQALFVLPCSHVFHYKCI  29



Lambda      K        H        a         alpha
   0.314    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00011766

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   73.6    3e-17
CDD:465355 pfam17123, zf-RING_11, RING-like zinc finger               55.2    7e-11


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 73.6 bits (181),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 25/45 (56%), Positives = 31/45 (69%), Gaps = 1/45 (2%)

Query  371  FSCPICTDDFIKGQDLRVLPCNHQFHPECIDPWLVNVSGTCPLCR  415
              CPIC ++F +G  + VLPC H FH EC+D WL + S TCPLCR
Sbjct  1    DECPICLEEFEEGDKVVVLPCGHHFHRECLDKWLRS-SNTCPLCR  44


>CDD:465355 pfam17123, zf-RING_11, RING-like zinc finger.  
Length=29

 Score = 55.2 bits (134),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 17/28 (61%), Positives = 20/28 (71%), Gaps = 0/28 (0%)

Query  373  CPICTDDFIKGQDLRVLPCNHQFHPECI  400
            C IC D+F  GQ L VLPC+H FH +CI
Sbjct  2    CSICLDEFKPGQALFVLPCSHVFHYKCI  29



Lambda      K        H        a         alpha
   0.314    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00017888

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   69.0    4e-16
CDD:465355 pfam17123, zf-RING_11, RING-like zinc finger               54.1    1e-10


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 69.0 bits (169),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 25/45 (56%), Positives = 31/45 (69%), Gaps = 1/45 (2%)

Query  144  FSCPICTDDFIKGQDLRVLPCNHQFHPECIDPWLVNVSGTCPLCR  188
              CPIC ++F +G  + VLPC H FH EC+D WL + S TCPLCR
Sbjct  1    DECPICLEEFEEGDKVVVLPCGHHFHRECLDKWLRS-SNTCPLCR  44


>CDD:465355 pfam17123, zf-RING_11, RING-like zinc finger.  
Length=29

 Score = 54.1 bits (131),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 17/28 (61%), Positives = 20/28 (71%), Gaps = 0/28 (0%)

Query  146  CPICTDDFIKGQDLRVLPCNHQFHPECI  173
            C IC D+F  GQ L VLPC+H FH +CI
Sbjct  2    CSICLDEFKPGQALFVLPCSHVFHYKCI  29



Lambda      K        H        a         alpha
   0.315    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00017889

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   60.1    5e-13


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 60.1 bits (146),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query  144  FSCPICTDDFIKGQDLRVLPCNHQFHPECIDPWLVNVSGTCPL  186
              CPIC ++F +G  + VLPC H FH EC+D WL + S TCPL
Sbjct  1    DECPICLEEFEEGDKVVVLPCGHHFHRECLDKWLRS-SNTCPL  42



Lambda      K        H        a         alpha
   0.319    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00011768

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   69.0    4e-16
CDD:465355 pfam17123, zf-RING_11, RING-like zinc finger               54.1    1e-10


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 69.0 bits (169),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 25/45 (56%), Positives = 31/45 (69%), Gaps = 1/45 (2%)

Query  144  FSCPICTDDFIKGQDLRVLPCNHQFHPECIDPWLVNVSGTCPLCR  188
              CPIC ++F +G  + VLPC H FH EC+D WL + S TCPLCR
Sbjct  1    DECPICLEEFEEGDKVVVLPCGHHFHRECLDKWLRS-SNTCPLCR  44


>CDD:465355 pfam17123, zf-RING_11, RING-like zinc finger.  
Length=29

 Score = 54.1 bits (131),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 17/28 (61%), Positives = 20/28 (71%), Gaps = 0/28 (0%)

Query  146  CPICTDDFIKGQDLRVLPCNHQFHPECI  173
            C IC D+F  GQ L VLPC+H FH +CI
Sbjct  2    CSICLDEFKPGQALFVLPCSHVFHYKCI  29



Lambda      K        H        a         alpha
   0.315    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00011770

Length=241


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00011772

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   73.6    3e-17
CDD:465355 pfam17123, zf-RING_11, RING-like zinc finger               55.2    7e-11


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 73.6 bits (181),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 25/45 (56%), Positives = 31/45 (69%), Gaps = 1/45 (2%)

Query  380  FSCPICTDDFIKGQDLRVLPCNHQFHPECIDPWLVNVSGTCPLCR  424
              CPIC ++F +G  + VLPC H FH EC+D WL + S TCPLCR
Sbjct  1    DECPICLEEFEEGDKVVVLPCGHHFHRECLDKWLRS-SNTCPLCR  44


>CDD:465355 pfam17123, zf-RING_11, RING-like zinc finger.  
Length=29

 Score = 55.2 bits (134),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 17/28 (61%), Positives = 20/28 (71%), Gaps = 0/28 (0%)

Query  382  CPICTDDFIKGQDLRVLPCNHQFHPECI  409
            C IC D+F  GQ L VLPC+H FH +CI
Sbjct  2    CSICLDEFKPGQALFVLPCSHVFHYKCI  29



Lambda      K        H        a         alpha
   0.314    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00017890

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  259     1e-83


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 259 bits (664),  Expect = 1e-83, Method: Composition-based stats.
 Identities = 111/376 (30%), Positives = 162/376 (43%), Gaps = 51/376 (14%)

Query  89   KKVDLVIGAYRDNNAKPWILPVVKKADEAIRNDPNLNHEYLPIKGLPDFTSAAQKLIVGA  148
             K++L    Y  +      LP V KA E         + Y P  G P+   A  K +   
Sbjct  2    DKINLGSNEYLGD-----TLPAVAKA-EKDALAGGTRNLYGPTDGHPELREALAKFL--G  53

Query  149  DSAAIREKRVCTLQAISGTGALHLGALFLAKFHPVPPK--VYLSSPTWANHHQIFTNVGL  206
             S  ++  R   +   SG GA     +FL       P   + + +PT+A++ +I    G 
Sbjct  54   RSPVLKLDREAAVVFGSGAGANIEALIFLLAN----PGDAILVPAPTYASYIRIARLAGG  109

Query  207  KLANYPYFSAKTKGLDFDGMLGALREAPPGSIIVLHACAHNPTGVDLTQDQWKQVAVVLR  266
            ++  YP + +    LDFD +  AL+E P    +VLH   HNPTG   T ++ +++  + +
Sbjct  110  EVVRYPLYDSNDFHLDFDALEAALKEKP---KVVLHTSPHNPTGTVATLEELEKLLDLAK  166

Query  267  ERQHFPFFDTAYQGFASGDLSRDSWAIRYFVDQGFELCIAQSFAKNFGLYGQRTGAFHFV  326
            E       D AY GF  G    D+ A R  + +G  L +  SF+K FGL G R G     
Sbjct  167  EHNILLLVDEAYAGFVFGSP--DAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYI---  221

Query  327  SAPGPDASTANANIASQLAILQRSEISNPPAYGARIASRILNDPQLFAEWEEDLRTMSGR  386
                      NA + SQL  L R   S    +    A+  L+DP L A   E++R    R
Sbjct  222  --------LGNAAVISQLRKLARPFYS--STHLQAAAAAALSDPLLVASELEEMRQ---R  268

Query  387  IAEMRKGLRERLEAKGTPGNWEHITSQIGMFSFTGLTEEQV----KILREKWHVYMTKN-  441
            I E R  LR+ L+A G       + SQ G F  TGL  E      ++L E+  VY+T   
Sbjct  269  IKERRDYLRDGLQAAG----LSVLPSQAGFFLLTGLDPETAKELAQVLLEEVGVYVTPGS  324

Query  442  -------GRISMAGLN  450
                    RI++AG  
Sbjct  325  SPGVPGWLRITVAGGT  340



Lambda      K        H        a         alpha
   0.317    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00011773

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  268     6e-87


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 268 bits (687),  Expect = 6e-87, Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 167/387 (43%), Gaps = 51/387 (13%)

Query  89   KKVDLVIGAYRDNNAKPWILPVVKKADEAIRNDPNLNHEYLPIKGLPDFTSAAQKLIVGA  148
             K++L    Y  +      LP V KA E         + Y P  G P+   A  K +   
Sbjct  2    DKINLGSNEYLGD-----TLPAVAKA-EKDALAGGTRNLYGPTDGHPELREALAKFL--G  53

Query  149  DSAAIREKRVCTLQAISGTGALHLGALFLAKFHPVPPK--VYLSSPTWANHHQIFTNVGL  206
             S  ++  R   +   SG GA     +FL       P   + + +PT+A++ +I    G 
Sbjct  54   RSPVLKLDREAAVVFGSGAGANIEALIFLLAN----PGDAILVPAPTYASYIRIARLAGG  109

Query  207  KLANYPYFSAKTKGLDFDGMLGALREAPPGSIIVLHACAHNPTGVDLTQDQWKQVAVVLR  266
            ++  YP + +    LDFD +  AL+E P    +VLH   HNPTG   T ++ +++  + +
Sbjct  110  EVVRYPLYDSNDFHLDFDALEAALKEKP---KVVLHTSPHNPTGTVATLEELEKLLDLAK  166

Query  267  ERQHFPFFDTAYQGFASGDLSRDSWAIRYFVDQGFELCIAQSFAKNFGLYGQRTGAFHFV  326
            E       D AY GF  G    D+ A R  + +G  L +  SF+K FGL G R G     
Sbjct  167  EHNILLLVDEAYAGFVFGSP--DAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYI---  221

Query  327  SAPGPDASTANANIASQLAILQRSEISNPPAYGARIASRILNDPQLFAEWEEDLRTMSGR  386
                      NA + SQL  L R   S    +    A+  L+DP L A   E++R    R
Sbjct  222  --------LGNAAVISQLRKLARPFYS--STHLQAAAAAALSDPLLVASELEEMRQ---R  268

Query  387  IAEMRKGLRERLEAKGTPGNWEHITSQIGMFSFTGLTEEQV----KILREKWHVYMTKN-  441
            I E R  LR+ L+A G       + SQ G F  TGL  E      ++L E+  VY+T   
Sbjct  269  IKERRDYLRDGLQAAG----LSVLPSQAGFFLLTGLDPETAKELAQVLLEEVGVYVTPGS  324

Query  442  -------GRISMAGLNTHNLDYFAEAV  461
                    RI++AG     L+   EA+
Sbjct  325  SPGVPGWLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.317    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581273816


Query= TCONS_00011774

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  268     6e-87


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 268 bits (687),  Expect = 6e-87, Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 167/387 (43%), Gaps = 51/387 (13%)

Query  89   KKVDLVIGAYRDNNAKPWILPVVKKADEAIRNDPNLNHEYLPIKGLPDFTSAAQKLIVGA  148
             K++L    Y  +      LP V KA E         + Y P  G P+   A  K +   
Sbjct  2    DKINLGSNEYLGD-----TLPAVAKA-EKDALAGGTRNLYGPTDGHPELREALAKFL--G  53

Query  149  DSAAIREKRVCTLQAISGTGALHLGALFLAKFHPVPPK--VYLSSPTWANHHQIFTNVGL  206
             S  ++  R   +   SG GA     +FL       P   + + +PT+A++ +I    G 
Sbjct  54   RSPVLKLDREAAVVFGSGAGANIEALIFLLAN----PGDAILVPAPTYASYIRIARLAGG  109

Query  207  KLANYPYFSAKTKGLDFDGMLGALREAPPGSIIVLHACAHNPTGVDLTQDQWKQVAVVLR  266
            ++  YP + +    LDFD +  AL+E P    +VLH   HNPTG   T ++ +++  + +
Sbjct  110  EVVRYPLYDSNDFHLDFDALEAALKEKP---KVVLHTSPHNPTGTVATLEELEKLLDLAK  166

Query  267  ERQHFPFFDTAYQGFASGDLSRDSWAIRYFVDQGFELCIAQSFAKNFGLYGQRTGAFHFV  326
            E       D AY GF  G    D+ A R  + +G  L +  SF+K FGL G R G     
Sbjct  167  EHNILLLVDEAYAGFVFGSP--DAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYI---  221

Query  327  SAPGPDASTANANIASQLAILQRSEISNPPAYGARIASRILNDPQLFAEWEEDLRTMSGR  386
                      NA + SQL  L R   S    +    A+  L+DP L A   E++R    R
Sbjct  222  --------LGNAAVISQLRKLARPFYS--STHLQAAAAAALSDPLLVASELEEMRQ---R  268

Query  387  IAEMRKGLRERLEAKGTPGNWEHITSQIGMFSFTGLTEEQV----KILREKWHVYMTKN-  441
            I E R  LR+ L+A G       + SQ G F  TGL  E      ++L E+  VY+T   
Sbjct  269  IKERRDYLRDGLQAAG----LSVLPSQAGFFLLTGLDPETAKELAQVLLEEVGVYVTPGS  324

Query  442  -------GRISMAGLNTHNLDYFAEAV  461
                    RI++AG     L+   EA+
Sbjct  325  SPGVPGWLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.317    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581273816


Query= TCONS_00011775

Length=244
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  191     4e-60


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 191 bits (487),  Expect = 4e-60, Method: Composition-based stats.
 Identities = 79/248 (32%), Positives = 111/248 (45%), Gaps = 37/248 (15%)

Query  1    MLGALREAPPGSIIVLHACAHNPTGVDLTQDQWKQVAVVLRERQHFPFFDTAYQGFASGD  60
            +  AL+E P    +VLH   HNPTG   T ++ +++  + +E       D AY GF  G 
Sbjct  129  LEAALKEKP---KVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGS  185

Query  61   LSRDSWAIRYFVDQGFELCIAQSFAKNFGLYGQRTGAFHFVSAPGPDASTANANIASQLA  120
               D+ A R  + +G  L +  SF+K FGL G R G               NA + SQL 
Sbjct  186  P--DAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYI-----------LGNAAVISQLR  232

Query  121  ILQRSEISNPPAYGARIASRILNDPQLFAEWEEDLRTMSGRIAEMRKGLRERLEAKGTPG  180
             L R   S    +    A+  L+DP L A   E++R    RI E R  LR+ L+A G   
Sbjct  233  KLARPFYS--STHLQAAAAAALSDPLLVASELEEMRQ---RIKERRDYLRDGLQAAG---  284

Query  181  NWEHITSQIGMFSFTGLTEEQV----KILREKWHVYMTKN--------GRISMAGLNTHN  228
                + SQ G F  TGL  E      ++L E+  VY+T           RI++AG     
Sbjct  285  -LSVLPSQAGFFLLTGLDPETAKELAQVLLEEVGVYVTPGSSPGVPGWLRITVAGGTEEE  343

Query  229  LDYFAEAV  236
            L+   EA+
Sbjct  344  LEELLEAI  351



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00011776

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  139     3e-39
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            94.9    1e-22


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 139 bits (353),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 120/296 (41%), Gaps = 82/296 (28%)

Query  118  FERLNHIEEGSYGWVSRAKDITTGEVVALKKLKMENSPDGFPVTGLREIQTLLEARHTNI  177
            +E L  +  GS+G V +AK   TG++VA+KK+K E          LREI+ L +  H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  178  VYLREVVMGTKMDDVFLVMDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSGVEFLHSH  236
            V L +     K D+++LV++++E   L  LL +    F   E K +M QIL G+E     
Sbjct  61   VRLYDAFE-DK-DNLYLVLEYVEGGSLFDLLSEKG-AFSEREAKFIMKQILEGLE-----  112

Query  237  WIMHRDLKTSNLLMNNRGEIKIADFGMARYYGDPPPKLTQLVVTLWYRSPELLLGAEKYG  296
                                                 LT  V T WY +PE +LG   YG
Sbjct  113  ---------------------------------SGSSLTTFVGTPWYMAPE-VLGGNPYG  138

Query  297  PEIDMWSIGCIFGELLTKEPLLQGKNEVDQVSKIFALTGPPTQQTWPGFRSLPNAKSL--  354
            P++D+WS+GCI  ELLT +P   G N  +    I  +  P      P   S   AK L  
Sbjct  139  PKVDVWSLGCILYELLTGKPPFPGINGNEIYELI--IDQPYAFPELPSNLS-EEAKDLLK  195

Query  355  RLPPTSTSGLTENPPLLPRSKFPFLTNSGLRLLSSLLALNPSARPSAQECLSHKYF  410
            +L       L ++P                             R +A + L H +F
Sbjct  196  KL-------LKKDPSK---------------------------RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 94.9 bits (237),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 43/219 (20%)

Query  118  FERLNHIEEGSYGWVSRAK----DITTGEVVALKKLKMENSPDG---FPVTGLREIQTLL  170
                  + EG++G V +         T   VA+K LK     +    F    L E   + 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMK  56

Query  171  EARHTNIVYLREVVMGTKMDDVFLVMDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSG  229
            +  H NIV L  V   T+ + +++V +++   DL   L   +      ++ ++ LQI  G
Sbjct  57   KLDHPNIVKLLGVC--TQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKG  114

Query  230  VEFLHSHWIMHRDLKTSNLLMNNRGEIKIADFGMAR------YY-----GDPPPKLTQLV  278
            +E+L S   +HRDL   N L++    +KI+DFG++R      YY     G  P K     
Sbjct  115  MEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIK-----  169

Query  279  VTLWYRSPELLLGAEKYGPEIDMWSIGCIFG----ELLT  313
               W  +PE L    K+  + D+WS    FG    E+ T
Sbjct  170  ---WM-APESLKDG-KFTSKSDVWS----FGVLLWEIFT  199



Lambda      K        H        a         alpha
   0.315    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00011777

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  139     3e-39
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            94.9    1e-22


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 139 bits (353),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 120/296 (41%), Gaps = 82/296 (28%)

Query  118  FERLNHIEEGSYGWVSRAKDITTGEVVALKKLKMENSPDGFPVTGLREIQTLLEARHTNI  177
            +E L  +  GS+G V +AK   TG++VA+KK+K E          LREI+ L +  H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  178  VYLREVVMGTKMDDVFLVMDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSGVEFLHSH  236
            V L +     K D+++LV++++E   L  LL +    F   E K +M QIL G+E     
Sbjct  61   VRLYDAFE-DK-DNLYLVLEYVEGGSLFDLLSEKG-AFSEREAKFIMKQILEGLE-----  112

Query  237  WIMHRDLKTSNLLMNNRGEIKIADFGMARYYGDPPPKLTQLVVTLWYRSPELLLGAEKYG  296
                                                 LT  V T WY +PE +LG   YG
Sbjct  113  ---------------------------------SGSSLTTFVGTPWYMAPE-VLGGNPYG  138

Query  297  PEIDMWSIGCIFGELLTKEPLLQGKNEVDQVSKIFALTGPPTQQTWPGFRSLPNAKSL--  354
            P++D+WS+GCI  ELLT +P   G N  +    I  +  P      P   S   AK L  
Sbjct  139  PKVDVWSLGCILYELLTGKPPFPGINGNEIYELI--IDQPYAFPELPSNLS-EEAKDLLK  195

Query  355  RLPPTSTSGLTENPPLLPRSKFPFLTNSGLRLLSSLLALNPSARPSAQECLSHKYF  410
            +L       L ++P                             R +A + L H +F
Sbjct  196  KL-------LKKDPSK---------------------------RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 94.9 bits (237),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 43/219 (20%)

Query  118  FERLNHIEEGSYGWVSRAK----DITTGEVVALKKLKMENSPDG---FPVTGLREIQTLL  170
                  + EG++G V +         T   VA+K LK     +    F    L E   + 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMK  56

Query  171  EARHTNIVYLREVVMGTKMDDVFLVMDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSG  229
            +  H NIV L  V   T+ + +++V +++   DL   L   +      ++ ++ LQI  G
Sbjct  57   KLDHPNIVKLLGVC--TQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKG  114

Query  230  VEFLHSHWIMHRDLKTSNLLMNNRGEIKIADFGMAR------YY-----GDPPPKLTQLV  278
            +E+L S   +HRDL   N L++    +KI+DFG++R      YY     G  P K     
Sbjct  115  MEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIK-----  169

Query  279  VTLWYRSPELLLGAEKYGPEIDMWSIGCIFG----ELLT  313
               W  +PE L    K+  + D+WS    FG    E+ T
Sbjct  170  ---WM-APESLKDG-KFTSKSDVWS----FGVLLWEIFT  199



Lambda      K        H        a         alpha
   0.315    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00011778

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  139     3e-39
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            94.9    1e-22


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 139 bits (353),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 120/296 (41%), Gaps = 82/296 (28%)

Query  118  FERLNHIEEGSYGWVSRAKDITTGEVVALKKLKMENSPDGFPVTGLREIQTLLEARHTNI  177
            +E L  +  GS+G V +AK   TG++VA+KK+K E          LREI+ L +  H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  178  VYLREVVMGTKMDDVFLVMDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSGVEFLHSH  236
            V L +     K D+++LV++++E   L  LL +    F   E K +M QIL G+E     
Sbjct  61   VRLYDAFE-DK-DNLYLVLEYVEGGSLFDLLSEKG-AFSEREAKFIMKQILEGLE-----  112

Query  237  WIMHRDLKTSNLLMNNRGEIKIADFGMARYYGDPPPKLTQLVVTLWYRSPELLLGAEKYG  296
                                                 LT  V T WY +PE +LG   YG
Sbjct  113  ---------------------------------SGSSLTTFVGTPWYMAPE-VLGGNPYG  138

Query  297  PEIDMWSIGCIFGELLTKEPLLQGKNEVDQVSKIFALTGPPTQQTWPGFRSLPNAKSL--  354
            P++D+WS+GCI  ELLT +P   G N  +    I  +  P      P   S   AK L  
Sbjct  139  PKVDVWSLGCILYELLTGKPPFPGINGNEIYELI--IDQPYAFPELPSNLS-EEAKDLLK  195

Query  355  RLPPTSTSGLTENPPLLPRSKFPFLTNSGLRLLSSLLALNPSARPSAQECLSHKYF  410
            +L       L ++P                             R +A + L H +F
Sbjct  196  KL-------LKKDPSK---------------------------RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 94.9 bits (237),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 43/219 (20%)

Query  118  FERLNHIEEGSYGWVSRAK----DITTGEVVALKKLKMENSPDG---FPVTGLREIQTLL  170
                  + EG++G V +         T   VA+K LK     +    F    L E   + 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMK  56

Query  171  EARHTNIVYLREVVMGTKMDDVFLVMDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSG  229
            +  H NIV L  V   T+ + +++V +++   DL   L   +      ++ ++ LQI  G
Sbjct  57   KLDHPNIVKLLGVC--TQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKG  114

Query  230  VEFLHSHWIMHRDLKTSNLLMNNRGEIKIADFGMAR------YY-----GDPPPKLTQLV  278
            +E+L S   +HRDL   N L++    +KI+DFG++R      YY     G  P K     
Sbjct  115  MEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIK-----  169

Query  279  VTLWYRSPELLLGAEKYGPEIDMWSIGCIFG----ELLT  313
               W  +PE L    K+  + D+WS    FG    E+ T
Sbjct  170  ---WM-APESLKDG-KFTSKSDVWS----FGVLLWEIFT  199



Lambda      K        H        a         alpha
   0.315    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0833    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00011780

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  139     3e-39
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            94.9    1e-22


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 139 bits (353),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 120/296 (41%), Gaps = 82/296 (28%)

Query  118  FERLNHIEEGSYGWVSRAKDITTGEVVALKKLKMENSPDGFPVTGLREIQTLLEARHTNI  177
            +E L  +  GS+G V +AK   TG++VA+KK+K E          LREI+ L +  H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  178  VYLREVVMGTKMDDVFLVMDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSGVEFLHSH  236
            V L +     K D+++LV++++E   L  LL +    F   E K +M QIL G+E     
Sbjct  61   VRLYDAFE-DK-DNLYLVLEYVEGGSLFDLLSEKG-AFSEREAKFIMKQILEGLE-----  112

Query  237  WIMHRDLKTSNLLMNNRGEIKIADFGMARYYGDPPPKLTQLVVTLWYRSPELLLGAEKYG  296
                                                 LT  V T WY +PE +LG   YG
Sbjct  113  ---------------------------------SGSSLTTFVGTPWYMAPE-VLGGNPYG  138

Query  297  PEIDMWSIGCIFGELLTKEPLLQGKNEVDQVSKIFALTGPPTQQTWPGFRSLPNAKSL--  354
            P++D+WS+GCI  ELLT +P   G N  +    I  +  P      P   S   AK L  
Sbjct  139  PKVDVWSLGCILYELLTGKPPFPGINGNEIYELI--IDQPYAFPELPSNLS-EEAKDLLK  195

Query  355  RLPPTSTSGLTENPPLLPRSKFPFLTNSGLRLLSSLLALNPSARPSAQECLSHKYF  410
            +L       L ++P                             R +A + L H +F
Sbjct  196  KL-------LKKDPSK---------------------------RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 94.9 bits (237),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 43/219 (20%)

Query  118  FERLNHIEEGSYGWVSRAK----DITTGEVVALKKLKMENSPDG---FPVTGLREIQTLL  170
                  + EG++G V +         T   VA+K LK     +    F    L E   + 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMK  56

Query  171  EARHTNIVYLREVVMGTKMDDVFLVMDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSG  229
            +  H NIV L  V   T+ + +++V +++   DL   L   +      ++ ++ LQI  G
Sbjct  57   KLDHPNIVKLLGVC--TQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKG  114

Query  230  VEFLHSHWIMHRDLKTSNLLMNNRGEIKIADFGMAR------YY-----GDPPPKLTQLV  278
            +E+L S   +HRDL   N L++    +KI+DFG++R      YY     G  P K     
Sbjct  115  MEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIK-----  169

Query  279  VTLWYRSPELLLGAEKYGPEIDMWSIGCIFG----ELLT  313
               W  +PE L    K+  + D+WS    FG    E+ T
Sbjct  170  ---WM-APESLKDG-KFTSKSDVWS----FGVLLWEIFT  199



Lambda      K        H        a         alpha
   0.315    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00011779

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  139     3e-39
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            94.9    1e-22


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 139 bits (353),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 120/296 (41%), Gaps = 82/296 (28%)

Query  118  FERLNHIEEGSYGWVSRAKDITTGEVVALKKLKMENSPDGFPVTGLREIQTLLEARHTNI  177
            +E L  +  GS+G V +AK   TG++VA+KK+K E          LREI+ L +  H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  178  VYLREVVMGTKMDDVFLVMDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSGVEFLHSH  236
            V L +     K D+++LV++++E   L  LL +    F   E K +M QIL G+E     
Sbjct  61   VRLYDAFE-DK-DNLYLVLEYVEGGSLFDLLSEKG-AFSEREAKFIMKQILEGLE-----  112

Query  237  WIMHRDLKTSNLLMNNRGEIKIADFGMARYYGDPPPKLTQLVVTLWYRSPELLLGAEKYG  296
                                                 LT  V T WY +PE +LG   YG
Sbjct  113  ---------------------------------SGSSLTTFVGTPWYMAPE-VLGGNPYG  138

Query  297  PEIDMWSIGCIFGELLTKEPLLQGKNEVDQVSKIFALTGPPTQQTWPGFRSLPNAKSL--  354
            P++D+WS+GCI  ELLT +P   G N  +    I  +  P      P   S   AK L  
Sbjct  139  PKVDVWSLGCILYELLTGKPPFPGINGNEIYELI--IDQPYAFPELPSNLS-EEAKDLLK  195

Query  355  RLPPTSTSGLTENPPLLPRSKFPFLTNSGLRLLSSLLALNPSARPSAQECLSHKYF  410
            +L       L ++P                             R +A + L H +F
Sbjct  196  KL-------LKKDPSK---------------------------RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 94.9 bits (237),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 43/219 (20%)

Query  118  FERLNHIEEGSYGWVSRAK----DITTGEVVALKKLKMENSPDG---FPVTGLREIQTLL  170
                  + EG++G V +         T   VA+K LK     +    F    L E   + 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMK  56

Query  171  EARHTNIVYLREVVMGTKMDDVFLVMDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSG  229
            +  H NIV L  V   T+ + +++V +++   DL   L   +      ++ ++ LQI  G
Sbjct  57   KLDHPNIVKLLGVC--TQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKG  114

Query  230  VEFLHSHWIMHRDLKTSNLLMNNRGEIKIADFGMAR------YY-----GDPPPKLTQLV  278
            +E+L S   +HRDL   N L++    +KI+DFG++R      YY     G  P K     
Sbjct  115  MEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIK-----  169

Query  279  VTLWYRSPELLLGAEKYGPEIDMWSIGCIFG----ELLT  313
               W  +PE L    K+  + D+WS    FG    E+ T
Sbjct  170  ---WM-APESLKDG-KFTSKSDVWS----FGVLLWEIFT  199



Lambda      K        H        a         alpha
   0.315    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00017892

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  139     3e-39
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            94.9    1e-22


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 139 bits (353),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 120/296 (41%), Gaps = 82/296 (28%)

Query  118  FERLNHIEEGSYGWVSRAKDITTGEVVALKKLKMENSPDGFPVTGLREIQTLLEARHTNI  177
            +E L  +  GS+G V +AK   TG++VA+KK+K E          LREI+ L +  H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  178  VYLREVVMGTKMDDVFLVMDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSGVEFLHSH  236
            V L +     K D+++LV++++E   L  LL +    F   E K +M QIL G+E     
Sbjct  61   VRLYDAFE-DK-DNLYLVLEYVEGGSLFDLLSEKG-AFSEREAKFIMKQILEGLE-----  112

Query  237  WIMHRDLKTSNLLMNNRGEIKIADFGMARYYGDPPPKLTQLVVTLWYRSPELLLGAEKYG  296
                                                 LT  V T WY +PE +LG   YG
Sbjct  113  ---------------------------------SGSSLTTFVGTPWYMAPE-VLGGNPYG  138

Query  297  PEIDMWSIGCIFGELLTKEPLLQGKNEVDQVSKIFALTGPPTQQTWPGFRSLPNAKSL--  354
            P++D+WS+GCI  ELLT +P   G N  +    I  +  P      P   S   AK L  
Sbjct  139  PKVDVWSLGCILYELLTGKPPFPGINGNEIYELI--IDQPYAFPELPSNLS-EEAKDLLK  195

Query  355  RLPPTSTSGLTENPPLLPRSKFPFLTNSGLRLLSSLLALNPSARPSAQECLSHKYF  410
            +L       L ++P                             R +A + L H +F
Sbjct  196  KL-------LKKDPSK---------------------------RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 94.9 bits (237),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 43/219 (20%)

Query  118  FERLNHIEEGSYGWVSRAK----DITTGEVVALKKLKMENSPDG---FPVTGLREIQTLL  170
                  + EG++G V +         T   VA+K LK     +    F    L E   + 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMK  56

Query  171  EARHTNIVYLREVVMGTKMDDVFLVMDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSG  229
            +  H NIV L  V   T+ + +++V +++   DL   L   +      ++ ++ LQI  G
Sbjct  57   KLDHPNIVKLLGVC--TQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKG  114

Query  230  VEFLHSHWIMHRDLKTSNLLMNNRGEIKIADFGMAR------YY-----GDPPPKLTQLV  278
            +E+L S   +HRDL   N L++    +KI+DFG++R      YY     G  P K     
Sbjct  115  MEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIK-----  169

Query  279  VTLWYRSPELLLGAEKYGPEIDMWSIGCIFG----ELLT  313
               W  +PE L    K+  + D+WS    FG    E+ T
Sbjct  170  ---WM-APESLKDG-KFTSKSDVWS----FGVLLWEIFT  199



Lambda      K        H        a         alpha
   0.315    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00017891

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  81.9    3e-19
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            64.1    2e-12


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 81.9 bits (203),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 54/218 (25%), Positives = 76/218 (35%), Gaps = 80/218 (37%)

Query  1    MDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSGVEFLHSHWIMHRDLKTSNLLMNNRG  59
            ++++E   L  LL +    F   E K +M QIL G+E                       
Sbjct  77   LEYVEGGSLFDLLSEKG-AFSEREAKFIMKQILEGLE-----------------------  112

Query  60   EIKIADFGMARYYGDPPPKLTQLVVTLWYRSPELLLGAEKYGPEIDMWSIGCIFGELLTK  119
                               LT  V T WY +PE+L G   YGP++D+WS+GCI  ELLT 
Sbjct  113  ---------------SGSSLTTFVGTPWYMAPEVL-GGNPYGPKVDVWSLGCILYELLTG  156

Query  120  EPLLQGKNEVDQVSKIFALTGPPTQQTWPGFRSLPNAKSL--RLPPTSTSGLTENPPLLP  177
            +P   G N  +    I  +  P      P   S   AK L  +L       L ++P    
Sbjct  157  KPPFPGINGNEIYELI--IDQPYAFPELPSNLS-EEAKDLLKKL-------LKKDPSK--  204

Query  178  RSKFPFLTNSGLRLLSSLLALNPSARPSAQECLSHKYF  215
                                     R +A + L H +F
Sbjct  205  -------------------------RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 64.1 bits (157),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 61/134 (46%), Gaps = 30/134 (22%)

Query  1    MDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSGVEFLHSHWIMHRDLKTSNLLMNNRG  59
             +++   DL   L   +      ++ ++ LQI  G+E+L S   +HRDL   N L++   
Sbjct  80   TEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLESKNFVHRDLAARNCLVSENL  139

Query  60   EIKIADFGMAR------YY-----GDPPPKLTQLVVTLWYRSPELLLGAEKYGPEIDMWS  108
             +KI+DFG++R      YY     G  P K        W  +PE L    K+  + D+WS
Sbjct  140  VVKISDFGLSRDIYDDDYYRKRGGGKLPIK--------WM-APESLKDG-KFTSKSDVWS  189

Query  109  IGCIFG----ELLT  118
                FG    E+ T
Sbjct  190  ----FGVLLWEIFT  199



Lambda      K        H        a         alpha
   0.318    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00011782

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  139     3e-39
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            94.9    1e-22


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 139 bits (353),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 120/296 (41%), Gaps = 82/296 (28%)

Query  118  FERLNHIEEGSYGWVSRAKDITTGEVVALKKLKMENSPDGFPVTGLREIQTLLEARHTNI  177
            +E L  +  GS+G V +AK   TG++VA+KK+K E          LREI+ L +  H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  178  VYLREVVMGTKMDDVFLVMDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSGVEFLHSH  236
            V L +     K D+++LV++++E   L  LL +    F   E K +M QIL G+E     
Sbjct  61   VRLYDAFE-DK-DNLYLVLEYVEGGSLFDLLSEKG-AFSEREAKFIMKQILEGLE-----  112

Query  237  WIMHRDLKTSNLLMNNRGEIKIADFGMARYYGDPPPKLTQLVVTLWYRSPELLLGAEKYG  296
                                                 LT  V T WY +PE +LG   YG
Sbjct  113  ---------------------------------SGSSLTTFVGTPWYMAPE-VLGGNPYG  138

Query  297  PEIDMWSIGCIFGELLTKEPLLQGKNEVDQVSKIFALTGPPTQQTWPGFRSLPNAKSL--  354
            P++D+WS+GCI  ELLT +P   G N  +    I  +  P      P   S   AK L  
Sbjct  139  PKVDVWSLGCILYELLTGKPPFPGINGNEIYELI--IDQPYAFPELPSNLS-EEAKDLLK  195

Query  355  RLPPTSTSGLTENPPLLPRSKFPFLTNSGLRLLSSLLALNPSARPSAQECLSHKYF  410
            +L       L ++P                             R +A + L H +F
Sbjct  196  KL-------LKKDPSK---------------------------RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 94.9 bits (237),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 43/219 (20%)

Query  118  FERLNHIEEGSYGWVSRAK----DITTGEVVALKKLKMENSPDG---FPVTGLREIQTLL  170
                  + EG++G V +         T   VA+K LK     +    F    L E   + 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMK  56

Query  171  EARHTNIVYLREVVMGTKMDDVFLVMDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSG  229
            +  H NIV L  V   T+ + +++V +++   DL   L   +      ++ ++ LQI  G
Sbjct  57   KLDHPNIVKLLGVC--TQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKG  114

Query  230  VEFLHSHWIMHRDLKTSNLLMNNRGEIKIADFGMAR------YY-----GDPPPKLTQLV  278
            +E+L S   +HRDL   N L++    +KI+DFG++R      YY     G  P K     
Sbjct  115  MEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIK-----  169

Query  279  VTLWYRSPELLLGAEKYGPEIDMWSIGCIFG----ELLT  313
               W  +PE L    K+  + D+WS    FG    E+ T
Sbjct  170  ---WM-APESLKDG-KFTSKSDVWS----FGVLLWEIFT  199



Lambda      K        H        a         alpha
   0.315    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00011783

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  140     1e-39
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            96.4    4e-23


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 140 bits (355),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 85/296 (29%), Positives = 119/296 (40%), Gaps = 82/296 (28%)

Query  118  FERLNHIEEGSYGWVSRAKDITTGEVVALKKLKMENSPDGFPVTGLREIQTLLEARHTNI  177
            +E L  +  GS+G V +AK   TG++VA+KK+K E          LREI+ L +  H NI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  178  VYLREVVMGTKMDELFLVMDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSGVEFLHSH  236
            V L +     K D L+LV++++E   L  LL +    F   E K +M QIL G+E     
Sbjct  61   VRLYDAFE-DK-DNLYLVLEYVEGGSLFDLLSEKG-AFSEREAKFIMKQILEGLE-----  112

Query  237  WIMHRDLKTSNLLMNNRGEIKIADFGMARYYGDPPPKLTQLVVTLWYRSPELLLGAEKYG  296
                                                 LT  V T WY +PE +LG   YG
Sbjct  113  ---------------------------------SGSSLTTFVGTPWYMAPE-VLGGNPYG  138

Query  297  PEIDMWSIGCIFGELLTKEPLLQGKNEVDQVSKIFALTGPPTQQTWPGFRSLPNAKSL--  354
            P++D+WS+GCI  ELLT +P   G N  +    I  +  P      P   S   AK L  
Sbjct  139  PKVDVWSLGCILYELLTGKPPFPGINGNEIYELI--IDQPYAFPELPSNLS-EEAKDLLK  195

Query  355  RLPPTSTSGLTENPPLLPRSKFPFLTNSGLRLLSSLLALNPSARPSAQECLSHKYF  410
            +L       L ++P                             R +A + L H +F
Sbjct  196  KL-------LKKDPSK---------------------------RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 96.4 bits (241),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 61/219 (28%), Positives = 95/219 (43%), Gaps = 43/219 (20%)

Query  118  FERLNHIEEGSYGWVSRAK----DITTGEVVALKKLKMENSPDG---FPVTGLREIQTLL  170
                  + EG++G V +         T   VA+K LK     +    F    L E   + 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMK  56

Query  171  EARHTNIVYLREVVMGTKMDELFLVMDFLEH-DLKTLLDDMREPFLPSEIKTLMLQILSG  229
            +  H NIV L  V   T+ + L++V +++   DL   L   +      ++ ++ LQI  G
Sbjct  57   KLDHPNIVKLLGVC--TQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKG  114

Query  230  VEFLHSHWIMHRDLKTSNLLMNNRGEIKIADFGMAR------YY-----GDPPPKLTQLV  278
            +E+L S   +HRDL   N L++    +KI+DFG++R      YY     G  P K     
Sbjct  115  MEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIK-----  169

Query  279  VTLWYRSPELLLGAEKYGPEIDMWSIGCIFG----ELLT  313
               W  +PE L    K+  + D+WS    FG    E+ T
Sbjct  170  ---WM-APESLKDG-KFTSKSDVWS----FGVLLWEIFT  199



Lambda      K        H        a         alpha
   0.315    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00011784

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395271 pfam00342, PGI, Phosphoglucose isomerase. Phosphogluco...  615     0.0  


>CDD:395271 pfam00342, PGI, Phosphoglucose isomerase.  Phosphoglucose isomerase 
catalyzes the interconversion of glucose-6-phosphate 
and fructose-6-phosphate.
Length=487

 Score = 615 bits (1588),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/376 (67%), Positives = 301/376 (80%), Gaps = 4/376 (1%)

Query  1    MVTEALKPYGAEDMTLHFVSNIDGSHIAEALKHSDPETTLFLIASKTFTTAETTTNANSA  60
            MVTEALKPY   D+ +HFVSN+DG+HIAE LK  +PETTLF++ASKTFTTAET TNA SA
Sbjct  113  MVTEALKPYSGRDLDVHFVSNVDGTHIAEVLKKLNPETTLFIVASKTFTTAETMTNAESA  172

Query  61   KKWFLESAKDEAHIAKHFVALSTNEEEVTKFGIDKKNMFGFASWVGGRYSVWSAIGLSVA  120
            K+W L++ KD++ +AKHF+ALSTN E+V +FGID KNMF F  WVGGRYS+WSAIGL +A
Sbjct  173  KEWLLKALKDDSAVAKHFIALSTNAEKVEEFGIDTKNMFEFWDWVGGRYSLWSAIGLPIA  232

Query  121  LYIGFDNFHQFLAGAHAMDKHFRETPLEQNIPVLGGLLSVWYSDFFGAQTHLVAPFDQYL  180
            L IGF+NF Q L GAHAMDKHF   P E+NIPVL  LL VWY++FFGAQTH + P+DQYL
Sbjct  233  LSIGFENFQQLLEGAHAMDKHFLSAPPEKNIPVLLALLGVWYNNFFGAQTHAILPYDQYL  292

Query  181  HRFPAYLQQLSMESNGKAITRTGEYVKYTTGPILFGEPATNAQHSFFQLLHQGTKLIPSD  240
            HRFPAYLQQL MESNGK +TR G  V + TGPI+FGEP TN QH+F+QL+HQGT+LIP D
Sbjct  293  HRFPAYLQQLDMESNGKYVTRDGVLVDHQTGPIIFGEPGTNGQHAFYQLIHQGTRLIPCD  352

Query  241  FIMAAESHNPVEGGKHQRMLASNFLAQSEALMVGKTPEQVKTEGA---PDNLVPHKTFLG  297
            FI A +S NP E G H ++L SNF AQ+EALMVGK+PE+V+ E A    ++L+PHKTF G
Sbjct  353  FIGAVQSQNP-ENGDHHKILLSNFFAQTEALMVGKSPEEVRKELAAADVEHLIPHKTFTG  411

Query  298  NRPTTSILAQKITPSTLGALIAYYEHLTFTEGAVWNINSFDQWGVELGKVLAKKIQKELE  357
            NRP+ SIL QK+TP+TLGALIA YEH  F +GA+W INSFDQWGVELGKVLAK I  ELE
Sbjct  412  NRPSNSILVQKLTPATLGALIAMYEHKIFVQGAIWGINSFDQWGVELGKVLAKSILPELE  471

Query  358  TPGAGGDHDASTSGLL  373
                   HD+ST+GL+
Sbjct  472  NSNKVSSHDSSTNGLI  487



Lambda      K        H        a         alpha
   0.317    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00011785

Length=319


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00017893

Length=155
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460634 pfam02636, Methyltransf_28, Putative S-adenosyl-L-meth...  58.4    2e-11


>CDD:460634 pfam02636, Methyltransf_28, Putative S-adenosyl-L-methionine-dependent 
methyltransferase.  This family is a putative S-adenosyl-L-methionine 
(SAM)-dependent methyltransferase. In eukaryotes 
it plays a role in mitochondrial complex I activity.
Length=247

 Score = 58.4 bits (142),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 24/39 (62%), Gaps = 1/39 (3%)

Query  104  LVGIWTITEWMAQGSKRSGVQLIEVGPGKGTLMDDMLRV  142
            L+  W +  W A G   +  ++IE+GPG+GTL  D+LR 
Sbjct  1    LLARWLLEMWQALGRPYN-FRIIELGPGRGTLAADLLRA  38



Lambda      K        H        a         alpha
   0.319    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00017895

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00011786

Length=744


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 945848800


Query= TCONS_00017897

Length=744


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 945848800


Query= TCONS_00011787

Length=792


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1015696096


Query= TCONS_00017898

Length=557


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 694909020


Query= TCONS_00017899

Length=451
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463862 pfam13378, MR_MLE_C, Enolase C-terminal domain-like. T...  203     1e-63


>CDD:463862 pfam13378, MR_MLE_C, Enolase C-terminal domain-like.  This domain 
appears at the C-terminus of many of the proteins that 
carry the MR_MLE_N pfam02746 domain. EC:4.2.1.40.
Length=217

 Score = 203 bits (518),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 86/229 (38%), Positives = 118/229 (52%), Gaps = 18/229 (8%)

Query  200  KLRALLKESVAQ-GYKHFKLKVGAN-VEEDRRRLTIAREAIGYDRGNILMVDANQVWSVP  257
            +L A  + +V   G++ FKLKVG    EED  R+   REA+G      LMVDAN  WSV 
Sbjct  1    ELAAEARRAVEARGFRAFKLKVGGPDPEEDVERVRAVREAVGPGVD--LMVDANGAWSVA  58

Query  258  EAIEWMHQLAEFKPWFIEEPTSPDDILGHAAIKKALENTPHGTIGVATGEMCQNRVVFKQ  317
            EAI     L E    +IEEP  PDD+ G A +++A        + +ATGE   +R  F++
Sbjct  59   EAIRLARALEELGLLWIEEPVPPDDLEGLARLRRAT------PVPIATGESLYSREDFRR  112

Query  318  LLQTGALTVLQADACRVGGVNEVLAILLLARKFGVPIVPHSGGVGLP-EYTQHLSTIDYV  376
            LL+ GA+ ++Q D  RVGG+ E L I  LA  FGVP+ PHSGG  +    + HL      
Sbjct  113  LLEAGAVDIVQPDVTRVGGITEALKIAALAEAFGVPVAPHSGGGPIGLAASLHL----AA  168

Query  377  VVSGKKSVLEYVDHL---HEHFVHPSSVKDGYYVTPMEPGYSVEMKPES  422
             V        ++D L    +    P  V+DG    P  PG  VE+  ++
Sbjct  169  AVPNLLIQEYFLDPLLLEDDLLTEPLEVEDGRVAVPDGPGLGVELDEDA  217



Lambda      K        H        a         alpha
   0.318    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 553667144


Query= TCONS_00011788

Length=761
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460224 pfam01480, PWI, PWI domain                                 66.8    2e-14


>CDD:460224 pfam01480, PWI, PWI domain.  
Length=71

 Score = 66.8 bits (164),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (62%), Gaps = 1/71 (1%)

Query  687  EQLKPFVEKKIVEYLGVQEQMLVDVVEEHV-RKHGHPQELVEQLEEALDEEAEVLVRKLW  745
            E LKP++EKKI E LG ++ ++V+ V   +  K   P+EL  QL   LD++A   V++LW
Sbjct  1    EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLDKDAAKFVKELW  60

Query  746  RMIIFFSESEK  756
            ++++   ES  
Sbjct  61   KLLLSAQESPS  71



Lambda      K        H        a         alpha
   0.311    0.129    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 970586384


Query= TCONS_00011789

Length=761
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460224 pfam01480, PWI, PWI domain                                 66.8    2e-14


>CDD:460224 pfam01480, PWI, PWI domain.  
Length=71

 Score = 66.8 bits (164),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (62%), Gaps = 1/71 (1%)

Query  687  EQLKPFVEKKIVEYLGVQEQMLVDVVEEHV-RKHGHPQELVEQLEEALDEEAEVLVRKLW  745
            E LKP++EKKI E LG ++ ++V+ V   +  K   P+EL  QL   LD++A   V++LW
Sbjct  1    EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLDKDAAKFVKELW  60

Query  746  RMIIFFSESEK  756
            ++++   ES  
Sbjct  61   KLLLSAQESPS  71



Lambda      K        H        a         alpha
   0.311    0.129    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 970586384


Query= TCONS_00011790

Length=744


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 945848800


Query= TCONS_00017900

Length=744


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 945848800


Query= TCONS_00017901

Length=454


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0769    0.140     1.90     42.6     43.6 

Effective search space used: 558268256


Query= TCONS_00017902

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00011792

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463862 pfam13378, MR_MLE_C, Enolase C-terminal domain-like. T...  202     4e-65


>CDD:463862 pfam13378, MR_MLE_C, Enolase C-terminal domain-like.  This domain 
appears at the C-terminus of many of the proteins that 
carry the MR_MLE_N pfam02746 domain. EC:4.2.1.40.
Length=217

 Score = 202 bits (516),  Expect = 4e-65, Method: Composition-based stats.
 Identities = 86/229 (38%), Positives = 118/229 (52%), Gaps = 18/229 (8%)

Query  64   KLRALLKESVAQ-GYKHFKLKVGAN-VEEDRRRLTIAREAIGYDRGNILMVDANQVWSVP  121
            +L A  + +V   G++ FKLKVG    EED  R+   REA+G      LMVDAN  WSV 
Sbjct  1    ELAAEARRAVEARGFRAFKLKVGGPDPEEDVERVRAVREAVGPGVD--LMVDANGAWSVA  58

Query  122  EAIEWMHQLAEFKPWFIEEPTSPDDILGHAAIKKALENTPHGTIGVATGEMCQNRVVFKQ  181
            EAI     L E    +IEEP  PDD+ G A +++A        + +ATGE   +R  F++
Sbjct  59   EAIRLARALEELGLLWIEEPVPPDDLEGLARLRRAT------PVPIATGESLYSREDFRR  112

Query  182  LLQTGALTVLQADACRVGGVNEVLAILLLARKFGVPIVPHSGGVGLP-EYTQHLSTIDYV  240
            LL+ GA+ ++Q D  RVGG+ E L I  LA  FGVP+ PHSGG  +    + HL      
Sbjct  113  LLEAGAVDIVQPDVTRVGGITEALKIAALAEAFGVPVAPHSGGGPIGLAASLHL----AA  168

Query  241  VVSGKKSVLEYVDHL---HEHFVHPSSVKDGYYVTPMEPGYSVEMKPES  286
             V        ++D L    +    P  V+DG    P  PG  VE+  ++
Sbjct  169  AVPNLLIQEYFLDPLLLEDDLLTEPLEVEDGRVAVPDGPGLGVELDEDA  217



Lambda      K        H        a         alpha
   0.317    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00011791

Length=451
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463862 pfam13378, MR_MLE_C, Enolase C-terminal domain-like. T...  203     1e-63


>CDD:463862 pfam13378, MR_MLE_C, Enolase C-terminal domain-like.  This domain 
appears at the C-terminus of many of the proteins that 
carry the MR_MLE_N pfam02746 domain. EC:4.2.1.40.
Length=217

 Score = 203 bits (518),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 86/229 (38%), Positives = 118/229 (52%), Gaps = 18/229 (8%)

Query  200  KLRALLKESVAQ-GYKHFKLKVGAN-VEEDRRRLTIAREAIGYDRGNILMVDANQVWSVP  257
            +L A  + +V   G++ FKLKVG    EED  R+   REA+G      LMVDAN  WSV 
Sbjct  1    ELAAEARRAVEARGFRAFKLKVGGPDPEEDVERVRAVREAVGPGVD--LMVDANGAWSVA  58

Query  258  EAIEWMHQLAEFKPWFIEEPTSPDDILGHAAIKKALENTPHGTIGVATGEMCQNRVVFKQ  317
            EAI     L E    +IEEP  PDD+ G A +++A        + +ATGE   +R  F++
Sbjct  59   EAIRLARALEELGLLWIEEPVPPDDLEGLARLRRAT------PVPIATGESLYSREDFRR  112

Query  318  LLQTGALTVLQADACRVGGVNEVLAILLLARKFGVPIVPHSGGVGLP-EYTQHLSTIDYV  376
            LL+ GA+ ++Q D  RVGG+ E L I  LA  FGVP+ PHSGG  +    + HL      
Sbjct  113  LLEAGAVDIVQPDVTRVGGITEALKIAALAEAFGVPVAPHSGGGPIGLAASLHL----AA  168

Query  377  VVSGKKSVLEYVDHL---HEHFVHPSSVKDGYYVTPMEPGYSVEMKPES  422
             V        ++D L    +    P  V+DG    P  PG  VE+  ++
Sbjct  169  AVPNLLIQEYFLDPLLLEDDLLTEPLEVEDGRVAVPDGPGLGVELDEDA  217



Lambda      K        H        a         alpha
   0.318    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 553667144


Query= TCONS_00017903

Length=261


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00011796

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460200 pfam01412, ArfGap, Putative GTPase activating protein ...  154     4e-46


>CDD:460200 pfam01412, ArfGap, Putative GTPase activating protein for Arf. 
 Putative zinc fingers with GTPase activating proteins (GAPs) 
towards the small GTPase, Arf. The GAP of ARD1 stimulates 
GTPase hydrolysis for ARD1 but not ARFs.
Length=117

 Score = 154 bits (392),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 47/117 (40%), Positives = 70/117 (60%), Gaps = 1/117 (1%)

Query  9    QKIFEKLKLKPANKICFDCGSKNPTWSSVPFGIYLCLDCSAHHRNLGVHISFVRSTNLDQ  68
            +++  +L   P NK+C DCG+ NPTW+SV  GI++C+DCS  HR+LGVHIS VRS  LD 
Sbjct  1    KRVLRELLKLPGNKVCADCGAPNPTWASVNLGIFICIDCSGVHRSLGVHISKVRSLTLDT  60

Query  69   WQWEQLRIMKVGGNESATKYFQSHGGSAALASKD-VKVKYTCNAAVKYKEELKRRAA  124
            W  EQL +MK GGN+ A ++++++   +        + K       KY E+   +  
Sbjct  61   WTDEQLELMKAGGNDRANEFWEANLPPSYKPPPSSDREKRESFIRAKYVEKKFAKPG  117



Lambda      K        H        a         alpha
   0.310    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599678264


Query= TCONS_00011794

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395651 pfam00809, Pterin_bind, Pterin binding enzyme. This fa...  279     2e-95


>CDD:395651 pfam00809, Pterin_bind, Pterin binding enzyme.  This family includes 
a variety of pterin binding enzymes that all adopt a 
TIM barrel fold. The family includes dihydropteroate synthase 
EC:2.5.1.15 as well as a group methyltransferase enzymes 
including methyltetrahydrofolate, corrinoid iron-sulfur protein 
methyltransferase (MeTr) that catalyzes a key step in the 
Wood-Ljungdahl pathway of carbon dioxide fixation. It transfers 
the N5-methyl group from methyltetrahydrofolate (CH3-H4folate) 
to a cob(I)amide centre in another protein, the corrinoid 
iron-sulfur protein. MeTr is a member of a family of 
proteins that includes methionine synthase and methanogenic 
enzymes that activate the methyl group of methyltetra-hydromethano(or 
-sarcino)pterin.
Length=243

 Score = 279 bits (715),  Expect = 2e-95, Method: Composition-based stats.
 Identities = 128/254 (50%), Positives = 161/254 (63%), Gaps = 11/254 (4%)

Query  1    MAILNVTPDSFSDGGKHFSQDLSALTETVRHLIAAGATIIDVGGESTRPGSAPVGEAEEL  60
            M ILNVTPDSFSDGG+    D  AL    R ++  GA IID+GGESTRPG+  V   EE+
Sbjct  1    MGILNVTPDSFSDGGRFLDLD-KAL-AHARRMVEEGADIIDIGGESTRPGAERVDGEEEM  58

Query  61   ARVIPVIRHIRTSIPEANNIAISIDTYRAKVAEEACAAGADIINDISAGTLDPEMLPTMA  120
             RV+PV+     ++ +  ++ IS+DT +A+VAE A  AGADIINDIS G  DPEM    A
Sbjct  59   ERVLPVLA----ALRDEADVPISVDTTKAEVAEAALKAGADIINDISGGDGDPEMAELAA  114

Query  121  RTGKAVILMHMRGTPATMTKLTDYPNGIVQDVGAELRARVAAAEAAGIRRWRIILDPGLG  180
              G AV++MHM GTP TM +       +V++V   LRARVAAAE AG+    IILDPG+G
Sbjct  115  EYGAAVVVMHMDGTPKTMQENEQQYEDVVEEVERFLRARVAAAEEAGVPPEDIILDPGIG  174

Query  181  FAKNMPHDLAILRDLQQFRTGIEGLEYLPWLMGPSRKRFIGRLTGVEKASERTWGTAATV  240
            F K   H+L +LR L + R  +     +P L+G SRK FIGR   +    ER  GTAA +
Sbjct  175  FGKTEEHNLELLRTLDELRVILG----VPVLLGVSRKSFIGRGLPL-GGEERDAGTAAFL  229

Query  241  TASIAGGADIVRVH  254
              +IA GADIVRVH
Sbjct  230  ALAIAAGADIVRVH  243



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00011793

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395651 pfam00809, Pterin_bind, Pterin binding enzyme. This fa...  279     2e-95


>CDD:395651 pfam00809, Pterin_bind, Pterin binding enzyme.  This family includes 
a variety of pterin binding enzymes that all adopt a 
TIM barrel fold. The family includes dihydropteroate synthase 
EC:2.5.1.15 as well as a group methyltransferase enzymes 
including methyltetrahydrofolate, corrinoid iron-sulfur protein 
methyltransferase (MeTr) that catalyzes a key step in the 
Wood-Ljungdahl pathway of carbon dioxide fixation. It transfers 
the N5-methyl group from methyltetrahydrofolate (CH3-H4folate) 
to a cob(I)amide centre in another protein, the corrinoid 
iron-sulfur protein. MeTr is a member of a family of 
proteins that includes methionine synthase and methanogenic 
enzymes that activate the methyl group of methyltetra-hydromethano(or 
-sarcino)pterin.
Length=243

 Score = 279 bits (715),  Expect = 2e-95, Method: Composition-based stats.
 Identities = 128/254 (50%), Positives = 161/254 (63%), Gaps = 11/254 (4%)

Query  1    MAILNVTPDSFSDGGKHFSQDLSALTETVRHLIAAGATIIDVGGESTRPGSAPVGEAEEL  60
            M ILNVTPDSFSDGG+    D  AL    R ++  GA IID+GGESTRPG+  V   EE+
Sbjct  1    MGILNVTPDSFSDGGRFLDLD-KAL-AHARRMVEEGADIIDIGGESTRPGAERVDGEEEM  58

Query  61   ARVIPVIRHIRTSIPEANNIAISIDTYRAKVAEEACAAGADIINDISAGTLDPEMLPTMA  120
             RV+PV+     ++ +  ++ IS+DT +A+VAE A  AGADIINDIS G  DPEM    A
Sbjct  59   ERVLPVLA----ALRDEADVPISVDTTKAEVAEAALKAGADIINDISGGDGDPEMAELAA  114

Query  121  RTGKAVILMHMRGTPATMTKLTDYPNGIVQDVGAELRARVAAAEAAGIRRWRIILDPGLG  180
              G AV++MHM GTP TM +       +V++V   LRARVAAAE AG+    IILDPG+G
Sbjct  115  EYGAAVVVMHMDGTPKTMQENEQQYEDVVEEVERFLRARVAAAEEAGVPPEDIILDPGIG  174

Query  181  FAKNMPHDLAILRDLQQFRTGIEGLEYLPWLMGPSRKRFIGRLTGVEKASERTWGTAATV  240
            F K   H+L +LR L + R  +     +P L+G SRK FIGR   +    ER  GTAA +
Sbjct  175  FGKTEEHNLELLRTLDELRVILG----VPVLLGVSRKSFIGRGLPL-GGEERDAGTAAFL  229

Query  241  TASIAGGADIVRVH  254
              +IA GADIVRVH
Sbjct  230  ALAIAAGADIVRVH  243



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00017904

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395651 pfam00809, Pterin_bind, Pterin binding enzyme. This fa...  279     2e-95


>CDD:395651 pfam00809, Pterin_bind, Pterin binding enzyme.  This family includes 
a variety of pterin binding enzymes that all adopt a 
TIM barrel fold. The family includes dihydropteroate synthase 
EC:2.5.1.15 as well as a group methyltransferase enzymes 
including methyltetrahydrofolate, corrinoid iron-sulfur protein 
methyltransferase (MeTr) that catalyzes a key step in the 
Wood-Ljungdahl pathway of carbon dioxide fixation. It transfers 
the N5-methyl group from methyltetrahydrofolate (CH3-H4folate) 
to a cob(I)amide centre in another protein, the corrinoid 
iron-sulfur protein. MeTr is a member of a family of 
proteins that includes methionine synthase and methanogenic 
enzymes that activate the methyl group of methyltetra-hydromethano(or 
-sarcino)pterin.
Length=243

 Score = 279 bits (715),  Expect = 2e-95, Method: Composition-based stats.
 Identities = 128/254 (50%), Positives = 161/254 (63%), Gaps = 11/254 (4%)

Query  1    MAILNVTPDSFSDGGKHFSQDLSALTETVRHLIAAGATIIDVGGESTRPGSAPVGEAEEL  60
            M ILNVTPDSFSDGG+    D  AL    R ++  GA IID+GGESTRPG+  V   EE+
Sbjct  1    MGILNVTPDSFSDGGRFLDLD-KAL-AHARRMVEEGADIIDIGGESTRPGAERVDGEEEM  58

Query  61   ARVIPVIRHIRTSIPEANNIAISIDTYRAKVAEEACAAGADIINDISAGTLDPEMLPTMA  120
             RV+PV+     ++ +  ++ IS+DT +A+VAE A  AGADIINDIS G  DPEM    A
Sbjct  59   ERVLPVLA----ALRDEADVPISVDTTKAEVAEAALKAGADIINDISGGDGDPEMAELAA  114

Query  121  RTGKAVILMHMRGTPATMTKLTDYPNGIVQDVGAELRARVAAAEAAGIRRWRIILDPGLG  180
              G AV++MHM GTP TM +       +V++V   LRARVAAAE AG+    IILDPG+G
Sbjct  115  EYGAAVVVMHMDGTPKTMQENEQQYEDVVEEVERFLRARVAAAEEAGVPPEDIILDPGIG  174

Query  181  FAKNMPHDLAILRDLQQFRTGIEGLEYLPWLMGPSRKRFIGRLTGVEKASERTWGTAATV  240
            F K   H+L +LR L + R  +     +P L+G SRK FIGR   +    ER  GTAA +
Sbjct  175  FGKTEEHNLELLRTLDELRVILG----VPVLLGVSRKSFIGRGLPL-GGEERDAGTAAFL  229

Query  241  TASIAGGADIVRVH  254
              +IA GADIVRVH
Sbjct  230  ALAIAAGADIVRVH  243



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00011797

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367316 pfam03060, NMO, Nitronate monooxygenase. Nitronate mon...  146     2e-41


>CDD:367316 pfam03060, NMO, Nitronate monooxygenase.  Nitronate monooxygenase 
(NMO), formerly referred to as 2-nitropropane dioxygenase 
(NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses 
molecular oxygen to oxidize (anionic) alkyl nitronates and, 
in the case of the enzyme from Neurospora crassa, (neutral) 
nitroalkanes to the corresponding carbonyl compounds and 
nitrite. Previously classified as 2-nitropropane dioxygenase, 
but it is now recognized that this was the result of the slow 
ionization of nitroalkanes to their nitronate (anionic) 
forms. The enzymes from the fungus Neurospora crassa and the 
yeast Williopsis saturnus var. mrakii (formerly classified 
as Hansenula mrakii) contain non-covalently bound FMN as the 
cofactor. Active towards linear alkyl nitronates of lengths 
between 2 and 6 carbon atoms and, with lower activity, towards 
propyl-2-nitronate. The enzyme from N. crassa can also utilize 
neutral nitroalkanes, but with lower activity. One atom 
of oxygen is incorporated into the carbonyl group of the 
aldehyde product. The reaction appears to involve the formation 
of an enzyme-bound nitronate radical and an a-peroxynitroethane 
species, which then decomposes, either in the active 
site of the enzyme or after release, to acetaldehyde and nitrite.
Length=331

 Score = 146 bits (371),  Expect = 2e-41, Method: Composition-based stats.
 Identities = 103/303 (34%), Positives = 148/303 (49%), Gaps = 37/303 (12%)

Query  8    RTTLTDLLKINHPVLLAGMNVAAGPKLAAAVTNAGGLGVIGGVGYTPEMLREQIAELKSY  67
            ++ LTD+  I  PV    M   + P+LAAAV+NAGGLGV+     TP+ L ++I ++K+ 
Sbjct  1    KSLLTDIHTIKPPVQQPMMGGISWPRLAAAVSNAGGLGVLASGYLTPDRLYQEIRKVKA-  59

Query  68   LHDKNAPFGVDLLLPQ--VGGSARKTKSEL--LPFYIYSMLGPRMLTRLFSSYDYTKGKL  123
            L DK  PFG +L LP+  +   A      L           G           DY K   
Sbjct  60   LTDK--PFGANLFLPKPDLADPAANYAKILGNNALGYNIEEGVP---------DYGK---  105

Query  124  NELVDIIIQEGAKLFVSAVGVPPKHVVEKLHAAGVLYMNMIGHPKHVQKALDAGADIICA  183
               V + + EG  +     G+PP  VV +LH AGV  +  I   K  + A   GAD +  
Sbjct  106  ---VLVDLDEGVNVVSFGFGLPPNDVVFRLHFAGVALIPTISSAKEARIAEARGADALIV  162

Query  184  QGGEG-----GGHTGDVPTTILIPTVAKLCQGKKSPMTGQPVQVVAAGGLFNGNSLAAAL  238
            QG E          GD     L+P V               + V+AAGG+++   +AAAL
Sbjct  163  QGPEAGGHQGTPEYGDKGLFRLVPQVPDAVD----------IPVIAAGGIWDRRGVAAAL  212

Query  239  MLGASAVWIGTRFILSDEAGAPVAHQEAVRTAGFEDNVRTIIFTGRPMRVRNNAYIQNWE  298
             LGAS V +GTRF+L+ E+GA  AH++ +  AG +D + T  F+GRP R   N +++  E
Sbjct  213  ALGASGVQMGTRFLLTKESGAHDAHKQKITEAGEDDTLVTSPFSGRPARALANGFLEELE  272

Query  299  ENR  301
            E +
Sbjct  273  EPK  275



Lambda      K        H        a         alpha
   0.317    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00011798

Length=271
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367316 pfam03060, NMO, Nitronate monooxygenase. Nitronate mon...  133     2e-37


>CDD:367316 pfam03060, NMO, Nitronate monooxygenase.  Nitronate monooxygenase 
(NMO), formerly referred to as 2-nitropropane dioxygenase 
(NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses 
molecular oxygen to oxidize (anionic) alkyl nitronates and, 
in the case of the enzyme from Neurospora crassa, (neutral) 
nitroalkanes to the corresponding carbonyl compounds and 
nitrite. Previously classified as 2-nitropropane dioxygenase, 
but it is now recognized that this was the result of the slow 
ionization of nitroalkanes to their nitronate (anionic) 
forms. The enzymes from the fungus Neurospora crassa and the 
yeast Williopsis saturnus var. mrakii (formerly classified 
as Hansenula mrakii) contain non-covalently bound FMN as the 
cofactor. Active towards linear alkyl nitronates of lengths 
between 2 and 6 carbon atoms and, with lower activity, towards 
propyl-2-nitronate. The enzyme from N. crassa can also utilize 
neutral nitroalkanes, but with lower activity. One atom 
of oxygen is incorporated into the carbonyl group of the 
aldehyde product. The reaction appears to involve the formation 
of an enzyme-bound nitronate radical and an a-peroxynitroethane 
species, which then decomposes, either in the active 
site of the enzyme or after release, to acetaldehyde and nitrite.
Length=331

 Score = 133 bits (335),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 94/273 (34%), Positives = 135/273 (49%), Gaps = 30/273 (11%)

Query  8    RTTLTDLLKINHPVLLAGMNVAAGPKLAAAVTNAGGLGVIGGVGYTPEMLREQIAELKSY  67
            ++ LTD+  I  PV    M   + P+LAAAV+NAGGLGV+     TP+ L ++I ++K+ 
Sbjct  1    KSLLTDIHTIKPPVQQPMMGGISWPRLAAAVSNAGGLGVLASGYLTPDRLYQEIRKVKA-  59

Query  68   LHDKNAPFGVDLLLPQVGGSARKTNYDYTKGKLNE------------LVDIIIQEGAKLF  115
            L DK  PFG +L LP+   +    NY    G                 V + + EG  + 
Sbjct  60   LTDK--PFGANLFLPKPDLADPAANYAKILGNNALGYNIEEGVPDYGKVLVDLDEGVNVV  117

Query  116  VSAVGVPPKHVVEKLHAAGVLYMNMIGHPKHVQKALDAGADIICAQGGEG-----GGHTG  170
                G+PP  VV +LH AGV  +  I   K  + A   GAD +  QG E          G
Sbjct  118  SFGFGLPPNDVVFRLHFAGVALIPTISSAKEARIAEARGADALIVQGPEAGGHQGTPEYG  177

Query  171  DVPTTILIPTVAKLCQGKKSPMTGQPVQVVAAGGLFNGNSLAAALMLGASAVWIGTRFIL  230
            D     L+P V               + V+AAGG+++   +AAAL LGAS V +GTRF+L
Sbjct  178  DKGLFRLVPQVPDAVD----------IPVIAAGGIWDRRGVAAALALGASGVQMGTRFLL  227

Query  231  SDEAGAPVAHQEAVRTAGFEDNVRTIIFTVSPH  263
            + E+GA  AH++ +  AG +D + T  F+  P 
Sbjct  228  TKESGAHDAHKQKITEAGEDDTLVTSPFSGRPA  260



Lambda      K        H        a         alpha
   0.318    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00011799

Length=355
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367316 pfam03060, NMO, Nitronate monooxygenase. Nitronate mon...  146     9e-42


>CDD:367316 pfam03060, NMO, Nitronate monooxygenase.  Nitronate monooxygenase 
(NMO), formerly referred to as 2-nitropropane dioxygenase 
(NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses 
molecular oxygen to oxidize (anionic) alkyl nitronates and, 
in the case of the enzyme from Neurospora crassa, (neutral) 
nitroalkanes to the corresponding carbonyl compounds and 
nitrite. Previously classified as 2-nitropropane dioxygenase, 
but it is now recognized that this was the result of the slow 
ionization of nitroalkanes to their nitronate (anionic) 
forms. The enzymes from the fungus Neurospora crassa and the 
yeast Williopsis saturnus var. mrakii (formerly classified 
as Hansenula mrakii) contain non-covalently bound FMN as the 
cofactor. Active towards linear alkyl nitronates of lengths 
between 2 and 6 carbon atoms and, with lower activity, towards 
propyl-2-nitronate. The enzyme from N. crassa can also utilize 
neutral nitroalkanes, but with lower activity. One atom 
of oxygen is incorporated into the carbonyl group of the 
aldehyde product. The reaction appears to involve the formation 
of an enzyme-bound nitronate radical and an a-peroxynitroethane 
species, which then decomposes, either in the active 
site of the enzyme or after release, to acetaldehyde and nitrite.
Length=331

 Score = 146 bits (371),  Expect = 9e-42, Method: Composition-based stats.
 Identities = 100/288 (35%), Positives = 145/288 (50%), Gaps = 30/288 (10%)

Query  8    RTTLTDLLKINHPVLLAGMNVAAGPKLAAAVTNAGGLGVIGGVGYTPEMLREQIAELKSY  67
            ++ LTD+  I  PV    M   + P+LAAAV+NAGGLGV+     TP+ L ++I ++K+ 
Sbjct  1    KSLLTDIHTIKPPVQQPMMGGISWPRLAAAVSNAGGLGVLASGYLTPDRLYQEIRKVKA-  59

Query  68   LHDKNAPFGVDLLLPQVGGSARKTNYDYTKGKLNE------------LVDIIIQEGAKLF  115
            L DK  PFG +L LP+   +    NY    G                 V + + EG  + 
Sbjct  60   LTDK--PFGANLFLPKPDLADPAANYAKILGNNALGYNIEEGVPDYGKVLVDLDEGVNVV  117

Query  116  VSAVGVPPKHVVEKLHAAGVLYMNMIGHPKHVQKALDAGADIICAQGGEG-----GGHTG  170
                G+PP  VV +LH AGV  +  I   K  + A   GAD +  QG E          G
Sbjct  118  SFGFGLPPNDVVFRLHFAGVALIPTISSAKEARIAEARGADALIVQGPEAGGHQGTPEYG  177

Query  171  DVPTTILIPTVAKLCQGKKSPMTGQPVQVVAAGGLFNGNSLAAALMLGASAVWIGTRFIL  230
            D     L+P V               + V+AAGG+++   +AAAL LGAS V +GTRF+L
Sbjct  178  DKGLFRLVPQVPDAVD----------IPVIAAGGIWDRRGVAAALALGASGVQMGTRFLL  227

Query  231  SDEAGAPVAHQEAVRTAGFEDNVRTIIFTGRPMRVRNNAYIQNWEENR  278
            + E+GA  AH++ +  AG +D + T  F+GRP R   N +++  EE +
Sbjct  228  TKESGAHDAHKQKITEAGEDDTLVTSPFSGRPARALANGFLEELEEPK  275



Lambda      K        H        a         alpha
   0.316    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00017906

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367316 pfam03060, NMO, Nitronate monooxygenase. Nitronate mon...  142     1e-40


>CDD:367316 pfam03060, NMO, Nitronate monooxygenase.  Nitronate monooxygenase 
(NMO), formerly referred to as 2-nitropropane dioxygenase 
(NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses 
molecular oxygen to oxidize (anionic) alkyl nitronates and, 
in the case of the enzyme from Neurospora crassa, (neutral) 
nitroalkanes to the corresponding carbonyl compounds and 
nitrite. Previously classified as 2-nitropropane dioxygenase, 
but it is now recognized that this was the result of the slow 
ionization of nitroalkanes to their nitronate (anionic) 
forms. The enzymes from the fungus Neurospora crassa and the 
yeast Williopsis saturnus var. mrakii (formerly classified 
as Hansenula mrakii) contain non-covalently bound FMN as the 
cofactor. Active towards linear alkyl nitronates of lengths 
between 2 and 6 carbon atoms and, with lower activity, towards 
propyl-2-nitronate. The enzyme from N. crassa can also utilize 
neutral nitroalkanes, but with lower activity. One atom 
of oxygen is incorporated into the carbonyl group of the 
aldehyde product. The reaction appears to involve the formation 
of an enzyme-bound nitronate radical and an a-peroxynitroethane 
species, which then decomposes, either in the active 
site of the enzyme or after release, to acetaldehyde and nitrite.
Length=331

 Score = 142 bits (359),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 98/288 (34%), Positives = 143/288 (50%), Gaps = 30/288 (10%)

Query  8    RTTLTDLLKINHPVLLAGMNVAAGPKLAAAVTNAGGLGVIGGVGYTPEMLREQIAELKSY  67
            ++ LTD+  I  PV    M   + P+LAAAV+NAGGLGV+     TP+ L ++I ++K+ 
Sbjct  1    KSLLTDIHTIKPPVQQPMMGGISWPRLAAAVSNAGGLGVLASGYLTPDRLYQEIRKVKA-  59

Query  68   LHDKNAPFGVDLLLPQVGGSARKTNYDYTKGKLNE------------LVDIIIQEGAKLF  115
            L DK  PFG +L LP+   +    NY    G                 V + + EG  + 
Sbjct  60   LTDK--PFGANLFLPKPDLADPAANYAKILGNNALGYNIEEGVPDYGKVLVDLDEGVNVV  117

Query  116  VSAVGVPPKHVVEKLHAAGVLYMNMIGHPKHVQKALDAGADIICAQGGEG-----GGHTG  170
                G+PP  VV +LH AGV  +  I   K  + A   GAD +  QG E          G
Sbjct  118  SFGFGLPPNDVVFRLHFAGVALIPTISSAKEARIAEARGADALIVQGPEAGGHQGTPEYG  177

Query  171  DVPTTILIPTVAKLCQGKKSPMTGQPVQVVAAGGLFNGNSLAAALMLGASAVWIGTRFIL  230
            D     L+P V               + V+AAGG+++   +AAAL LGAS V +GTRF+L
Sbjct  178  DKGLFRLVPQVPDAVD----------IPVIAAGGIWDRRGVAAALALGASGVQMGTRFLL  227

Query  231  SDEAGAPVAHQEAVRTAGFEDNVRTIIFTVSPMRVRNNAYIQNWEENR  278
            + E+GA  AH++ +  AG +D + T  F+  P R   N +++  EE +
Sbjct  228  TKESGAHDAHKQKITEAGEDDTLVTSPFSGRPARALANGFLEELEEPK  275



Lambda      K        H        a         alpha
   0.317    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00017905

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367316 pfam03060, NMO, Nitronate monooxygenase. Nitronate mon...  142     1e-40


>CDD:367316 pfam03060, NMO, Nitronate monooxygenase.  Nitronate monooxygenase 
(NMO), formerly referred to as 2-nitropropane dioxygenase 
(NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses 
molecular oxygen to oxidize (anionic) alkyl nitronates and, 
in the case of the enzyme from Neurospora crassa, (neutral) 
nitroalkanes to the corresponding carbonyl compounds and 
nitrite. Previously classified as 2-nitropropane dioxygenase, 
but it is now recognized that this was the result of the slow 
ionization of nitroalkanes to their nitronate (anionic) 
forms. The enzymes from the fungus Neurospora crassa and the 
yeast Williopsis saturnus var. mrakii (formerly classified 
as Hansenula mrakii) contain non-covalently bound FMN as the 
cofactor. Active towards linear alkyl nitronates of lengths 
between 2 and 6 carbon atoms and, with lower activity, towards 
propyl-2-nitronate. The enzyme from N. crassa can also utilize 
neutral nitroalkanes, but with lower activity. One atom 
of oxygen is incorporated into the carbonyl group of the 
aldehyde product. The reaction appears to involve the formation 
of an enzyme-bound nitronate radical and an a-peroxynitroethane 
species, which then decomposes, either in the active 
site of the enzyme or after release, to acetaldehyde and nitrite.
Length=331

 Score = 142 bits (359),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 98/288 (34%), Positives = 143/288 (50%), Gaps = 30/288 (10%)

Query  8    RTTLTDLLKINHPVLLAGMNVAAGPKLAAAVTNAGGLGVIGGVGYTPEMLREQIAELKSY  67
            ++ LTD+  I  PV    M   + P+LAAAV+NAGGLGV+     TP+ L ++I ++K+ 
Sbjct  1    KSLLTDIHTIKPPVQQPMMGGISWPRLAAAVSNAGGLGVLASGYLTPDRLYQEIRKVKA-  59

Query  68   LHDKNAPFGVDLLLPQVGGSARKTNYDYTKGKLNE------------LVDIIIQEGAKLF  115
            L DK  PFG +L LP+   +    NY    G                 V + + EG  + 
Sbjct  60   LTDK--PFGANLFLPKPDLADPAANYAKILGNNALGYNIEEGVPDYGKVLVDLDEGVNVV  117

Query  116  VSAVGVPPKHVVEKLHAAGVLYMNMIGHPKHVQKALDAGADIICAQGGEG-----GGHTG  170
                G+PP  VV +LH AGV  +  I   K  + A   GAD +  QG E          G
Sbjct  118  SFGFGLPPNDVVFRLHFAGVALIPTISSAKEARIAEARGADALIVQGPEAGGHQGTPEYG  177

Query  171  DVPTTILIPTVAKLCQGKKSPMTGQPVQVVAAGGLFNGNSLAAALMLGASAVWIGTRFIL  230
            D     L+P V               + V+AAGG+++   +AAAL LGAS V +GTRF+L
Sbjct  178  DKGLFRLVPQVPDAVD----------IPVIAAGGIWDRRGVAAALALGASGVQMGTRFLL  227

Query  231  SDEAGAPVAHQEAVRTAGFEDNVRTIIFTVSPQRVRNNAYIQNWEENR  278
            + E+GA  AH++ +  AG +D + T  F+  P R   N +++  EE +
Sbjct  228  TKESGAHDAHKQKITEAGEDDTLVTSPFSGRPARALANGFLEELEEPK  275



Lambda      K        H        a         alpha
   0.317    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00011800

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367316 pfam03060, NMO, Nitronate monooxygenase. Nitronate mon...  117     1e-31


>CDD:367316 pfam03060, NMO, Nitronate monooxygenase.  Nitronate monooxygenase 
(NMO), formerly referred to as 2-nitropropane dioxygenase 
(NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses 
molecular oxygen to oxidize (anionic) alkyl nitronates and, 
in the case of the enzyme from Neurospora crassa, (neutral) 
nitroalkanes to the corresponding carbonyl compounds and 
nitrite. Previously classified as 2-nitropropane dioxygenase, 
but it is now recognized that this was the result of the slow 
ionization of nitroalkanes to their nitronate (anionic) 
forms. The enzymes from the fungus Neurospora crassa and the 
yeast Williopsis saturnus var. mrakii (formerly classified 
as Hansenula mrakii) contain non-covalently bound FMN as the 
cofactor. Active towards linear alkyl nitronates of lengths 
between 2 and 6 carbon atoms and, with lower activity, towards 
propyl-2-nitronate. The enzyme from N. crassa can also utilize 
neutral nitroalkanes, but with lower activity. One atom 
of oxygen is incorporated into the carbonyl group of the 
aldehyde product. The reaction appears to involve the formation 
of an enzyme-bound nitronate radical and an a-peroxynitroethane 
species, which then decomposes, either in the active 
site of the enzyme or after release, to acetaldehyde and nitrite.
Length=331

 Score = 117 bits (295),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 91/270 (34%), Positives = 129/270 (48%), Gaps = 37/270 (14%)

Query  1    MNVAAGPKLAAAVTNAGGLGVIGGVGYTPEMLREQIAELKSYLHDKNAPFGVDLLLPQ--  58
            M   + P+LAAAV+NAGGLGV+     TP+ L ++I ++K+ L DK  PFG +L LP+  
Sbjct  19   MGGISWPRLAAAVSNAGGLGVLASGYLTPDRLYQEIRKVKA-LTDK--PFGANLFLPKPD  75

Query  59   VGGSARKTKSEL--LPFYIYSMLGPRMLTRLFSSYDYTKGKLNELVDIIIQEGAKLFVSA  116
            +   A      L           G           DY K      V + + EG  +    
Sbjct  76   LADPAANYAKILGNNALGYNIEEGVP---------DYGK------VLVDLDEGVNVVSFG  120

Query  117  VGVPPKHVVEKLHAAGVLYMNMIGHPKHVQKALDAGADIICAQGGEG-----GGHTGDVP  171
             G+PP  VV +LH AGV  +  I   K  + A   GAD +  QG E          GD  
Sbjct  121  FGLPPNDVVFRLHFAGVALIPTISSAKEARIAEARGADALIVQGPEAGGHQGTPEYGDKG  180

Query  172  TTILIPTVAKLCQGKKSPMTGQPVQVVAAGGLFNGNSLAAALMLGASAVWIGTRFILSDE  231
               L+P V               + V+AAGG+++   +AAAL LGAS V +GTRF+L+ E
Sbjct  181  LFRLVPQVPDAVD----------IPVIAAGGIWDRRGVAAALALGASGVQMGTRFLLTKE  230

Query  232  AGAPVAHQEAVRTAGFEDNVRTIIFTVSPH  261
            +GA  AH++ +  AG +D + T  F+  P 
Sbjct  231  SGAHDAHKQKITEAGEDDTLVTSPFSGRPA  260



Lambda      K        H        a         alpha
   0.319    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00017907

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  69.0    1e-13


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 69.0 bits (169),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 75/250 (30%), Gaps = 26/250 (10%)

Query  26   GGVLSFGSTVYGFATGWTSYAA---DYTVYQPANRSRRKIFLSAWIGLIIPLLFCQMLGI  82
            G    F S V G A GW +  A   D+T Y P  RS  KI L A  G         +LG 
Sbjct  197  GKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLVAVPGGFTLFALIGILGA  256

Query  83   AVMTATGIDDGNNKYQMGYDASGN-GGLLNAVLEPLG--GFGKFCLVILALSIIANNCPN  139
            A   A       +   +        G  L A+L  L   G      +  A S +A   P 
Sbjct  257  AAAYAAYGAPAWDPLDILARFDPTAGVFLPAILVALAQLGTNISANLYSAGSDLAALLP-  315

Query  140  IYSVALTLQVLSRYSQRVPRFVWVFLGSCASVAIAIPGYSHFETVLENFMN-FIAYWLSI  198
               +      L      +    W  LG+ A +             L       IA +  +
Sbjct  316  -KKINRKRGSLIAAIIALVICPWKLLGNSAFMFTTFLSL--LSGFLSPVAGVIIADYFVV  372

Query  199  YSGIALTDHFLFKRGFGGYRPEIYDKRDKLP------LGIAASIAF------GFGVAGMI  246
              G     H   +R    Y    Y             +GIAA +             G +
Sbjct  373  RRGYLHVAHLYTRRRGSAY---WYRGGVNWRAFAAYIVGIAAGLPGFSGSVGIKVPPGAM  429

Query  247  TGMSQSWWVG  256
             G   S+ VG
Sbjct  430  LGFDLSYLVG  439



Lambda      K        H        a         alpha
   0.327    0.143    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00011803

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  69.0    1e-13


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 69.0 bits (169),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 75/250 (30%), Gaps = 26/250 (10%)

Query  26   GGVLSFGSTVYGFATGWTSYAA---DYTVYQPANRSRRKIFLSAWIGLIIPLLFCQMLGI  82
            G    F S V G A GW +  A   D+T Y P  RS  KI L A  G         +LG 
Sbjct  197  GKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLVAVPGGFTLFALIGILGA  256

Query  83   AVMTATGIDDGNNKYQMGYDASGN-GGLLNAVLEPLG--GFGKFCLVILALSIIANNCPN  139
            A   A       +   +        G  L A+L  L   G      +  A S +A   P 
Sbjct  257  AAAYAAYGAPAWDPLDILARFDPTAGVFLPAILVALAQLGTNISANLYSAGSDLAALLP-  315

Query  140  IYSVALTLQVLSRYSQRVPRFVWVFLGSCASVAIAIPGYSHFETVLENFMN-FIAYWLSI  198
               +      L      +    W  LG+ A +             L       IA +  +
Sbjct  316  -KKINRKRGSLIAAIIALVICPWKLLGNSAFMFTTFLSL--LSGFLSPVAGVIIADYFVV  372

Query  199  YSGIALTDHFLFKRGFGGYRPEIYDKRDKLP------LGIAASIAF------GFGVAGMI  246
              G     H   +R    Y    Y             +GIAA +             G +
Sbjct  373  RRGYLHVAHLYTRRRGSAY---WYRGGVNWRAFAAYIVGIAAGLPGFSGSVGIKVPPGAM  429

Query  247  TGMSQSWWVG  256
             G   S+ VG
Sbjct  430  LGFDLSYLVG  439



Lambda      K        H        a         alpha
   0.327    0.143    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00011804

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00011805

Length=434
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  115     6e-29


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 115 bits (291),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 93/425 (22%), Positives = 145/425 (34%), Gaps = 40/425 (9%)

Query  1    MVVSSFAIGVLGKSLFDLGFVDAILTCLFFNLLGVLTVCFFSCFGAAFGLRQMVLSRFWF  60
              ++++ IG LG +   L +  ++L  +  NL+G + V      GA +GL   +LSR  F
Sbjct  23   FNINTWVIGALGVA-LGLNWWQSVLAIIAGNLIGAIFVALLGRAGAKYGLPFPILSRASF  81

Query  61   GWGPTKFIAILNVLACVGWSAANAIVGAQLINAVNGNV---PGFAAILIIAICTFVITFA  117
            G   +   ++L  +   GW    A +G++ +  + G +     +   +     T ++TF 
Sbjct  82   GIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKIFGHWLWIGAIPGTGLTELVTFF  141

Query  118  GYKVVHAYEYWSWIPTFIVFMIVLGTFAHSGDFRNLPMEVGTSEMGGVLS----------  167
             + +VH Y  W  +    VF ++         F  L      +  G V            
Sbjct  142  IFWLVHLYIVWLGVSAIRVFFVIAAPLIPVAAFGFLIWAAVKAGGGPVFDQPVSPGKSEL  201

Query  168  FGSTVYGFATGWTSYAA---DYTVYQPANRSRRKIFLSAWIGLIIPLLFCQMLGIAVMTA  224
            F S V G A GW +  A   D+T Y P  RS  KI L A  G         +LG A   A
Sbjct  202  FLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLVAVPGGFTLFALIGILGAAAAYA  261

Query  225  TGIDDGNNKYQMGYDASGN-GGLLNAVLEPLG--GFGKFCLVILALSIIANNCPNIYSVA  281
                   +   +        G  L A+L  L   G      +  A S +A   P    + 
Sbjct  262  AYGAPAWDPLDILARFDPTAGVFLPAILVALAQLGTNISANLYSAGSDLAALLP--KKIN  319

Query  282  LTLQVLSRYSQRVPRFVWVFLGSCASVAIAIPGYSHFETVLENFMN-FIAYWLSIYSGIA  340
                 L      +    W  LG+ A +             L       IA +  +  G  
Sbjct  320  RKRGSLIAAIIALVICPWKLLGNSAFMFTTFLSL--LSGFLSPVAGVIIADYFVVRRGYL  377

Query  341  LTDHFLFKRGFGGYRPEIYDKRDKLP------LGIAASIAF------GFGVAGMITGMSQ  388
               H   +R    Y    Y             +GIAA +             G + G   
Sbjct  378  HVAHLYTRRRGSAY---WYRGGVNWRAFAAYIVGIAAGLPGFSGSVGIKVPPGAMLGFDL  434

Query  389  SWWVG  393
            S+ VG
Sbjct  435  SYLVG  439



Lambda      K        H        a         alpha
   0.329    0.144    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 527594176


Query= TCONS_00011801

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  140     4e-37


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 140 bits (355),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 104/447 (23%), Positives = 160/447 (36%), Gaps = 41/447 (9%)

Query  60   VPADERTDTSYFNIGSMWLAANMVVSSFAIGVLGKSLFDLGFVDAILTCLFFNLLGVLTV  119
            VP +ERT ++  N+ S WL AN  ++++ IG LG +   L +  ++L  +  NL+G + V
Sbjct  2    VPEEERTWSTR-NLFSFWLGANFNINTWVIGALGVA-LGLNWWQSVLAIIAGNLIGAIFV  59

Query  120  CFFSCFGAAFGLRQMVLSRFWFGWGPTKFIAILNVLACVGWSAANAIVGAQLINAVNGNV  179
                  GA +GL   +LSR  FG   +   ++L  +   GW    A +G++ +  + G +
Sbjct  60   ALLGRAGAKYGLPFPILSRASFGIRGSLLPSLLRAVIACGWFGIQAWIGSEALLLMLGKI  119

Query  180  ---PGFAAILIIAICTFVITFAGYKVVHAYEYWSWIPTFIVFMIVLGTFAHSGDFRNLPM  236
                 +   +     T ++TF  + +VH Y  W  +    VF ++         F  L  
Sbjct  120  FGHWLWIGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAPLIPVAAFGFLIW  179

Query  237  EVGTSEMGGVLS----------FGSTVYGFATGWTSYAA---DYTVYQPANRSRRKIFLS  283
                +  G V            F S V G A GW +  A   D+T Y P  RS  KI L 
Sbjct  180  AAVKAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARSSSKIQLV  239

Query  284  AWIGLIIPLLFCQMLGIAVMTATGIDDGNNKYQMGYDASGN-GGLLNAVLEPLG--GFGK  340
            A  G         +LG A   A       +   +        G  L A+L  L   G   
Sbjct  240  AVPGGFTLFALIGILGAAAAYAAYGAPAWDPLDILARFDPTAGVFLPAILVALAQLGTNI  299

Query  341  FCLVILALSIIANNCPNIYSVALTLQVLSRYSQRVPRFVWVFLGSCASVAIAIPGYSHFE  400
               +  A S +A   P    +      L      +    W  LG+ A +           
Sbjct  300  SANLYSAGSDLAALLP--KKINRKRGSLIAAIIALVICPWKLLGNSAFMFTTFLSL--LS  355

Query  401  TVLENFMN-FIAYWLSIYSGIALTDHFLFKRGFGGYRPEIYDKRDKLP------LGIAAS  453
              L       IA +  +  G     H   +R    Y    Y             +GIAA 
Sbjct  356  GFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAY---WYRGGVNWRAFAAYIVGIAAG  412

Query  454  IAF------GFGVAGMITGMSQSWWVG  474
            +             G + G   S+ VG
Sbjct  413  LPGFSGSVGIKVPPGAMLGFDLSYLVG  439



Lambda      K        H        a         alpha
   0.327    0.143    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00011806

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purin...  139     1e-36


>CDD:251109 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, 
thiamine, allantoin.  
Length=439

 Score = 139 bits (351),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 108/454 (24%), Positives = 161/454 (35%), Gaps = 47/454 (10%)

Query  60   VPADERTDTSYFNIGSMWLAANMVVSSFAIGVLGKSLFDLGFVDAILTCLFFNLLGVLTV  119
            VP +ERT ++  N+ S WL AN  ++++ IG LG +   L +  ++L  +  NL+G + V
Sbjct  2    VPEEERTWSTR-NLFSFWLGANFNINTWVIGALGVA-LGLNWWQSVLAIIAGNLIGAIFV  59

Query  120  CFFSCFGAAFGLRQMVLSRFWFGWGPTKFSADILVPSVAILNVLACVGWSAANAIVGAQL  179
                  GA +GL   +LSR  FG    + S   L+PS+    V+AC  +     I    L
Sbjct  60   ALLGRAGAKYGLPFPILSRASFG---IRGS---LLPSLLRA-VIACGWFGIQAWIGSEAL  112

Query  180  INAVNGNVPGFAAI--LIIAICTFVITFAGYKVVHAYEYWSWIPTFIVFMIVLGTFAHSG  237
            +  +      +  I  +     T ++TF  + +VH Y  W  +    VF ++        
Sbjct  113  LLMLGKIFGHWLWIGAIPGTGLTELVTFFIFWLVHLYIVWLGVSAIRVFFVIAAPLIPVA  172

Query  238  DFRNLPMEVGTSEMGGVLS----------FGSTVYGFATGWTSYAA---DYTVYQPANRS  284
             F  L      +  G V            F S V G A GW +  A   D+T Y P  RS
Sbjct  173  AFGFLIWAAVKAGGGPVFDQPVSPGKSELFLSAVAGCAAGWATLIANAPDFTRYAPTARS  232

Query  285  RRKIFLSAWIGLIIPLLFCQMLGIAVMTATGIDDGNNKYQMGYDASGN-GGLLNAVLEPL  343
              KI L A  G         +LG A   A       +   +        G  L A+L  L
Sbjct  233  SSKIQLVAVPGGFTLFALIGILGAAAAYAAYGAPAWDPLDILARFDPTAGVFLPAILVAL  292

Query  344  G--GFGKFCLVILALSIIANNCPNIYSVALTLQVLSRYSQRVPRFVWVFLGSCASVAIAI  401
               G      +  A S +A   P    +      L      +    W  LG+ A +    
Sbjct  293  AQLGTNISANLYSAGSDLAALLP--KKINRKRGSLIAAIIALVICPWKLLGNSAFMFTTF  350

Query  402  PGYSHFETVLENFMN-FIAYWLSIYSGIALTDHFLFKRGFGGYRPEIYDKRDKLP-----  455
                     L       IA +  +  G     H   +R    Y    Y            
Sbjct  351  LSL--LSGFLSPVAGVIIADYFVVRRGYLHVAHLYTRRRGSAY---WYRGGVNWRAFAAY  405

Query  456  -LGIAASIAF------GFGVAGMITGMSQSWWVG  482
             +GIAA +             G + G   S+ VG
Sbjct  406  IVGIAAGLPGFSGSVGIKVPPGAMLGFDLSYLVG  439



Lambda      K        H        a         alpha
   0.327    0.142    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 654076512


Query= TCONS_00011807

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463545 pfam12353, eIF3g, Eukaryotic translation initiation fa...  206     6e-68
CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  65.7    1e-14


>CDD:463545 pfam12353, eIF3g, Eukaryotic translation initiation factor 3 
subunit G.  This domain family is found in eukaryotes, and is 
approximately 130 amino acids in length. The family is found 
in association with pfam00076. This family is subunit G of 
the eukaryotic translation initiation factor 3. Subunit G 
is required for eIF3 integrity.
Length=126

 Score = 206 bits (527),  Expect = 6e-68, Method: Composition-based stats.
 Identities = 67/131 (51%), Positives = 89/131 (68%), Gaps = 7/131 (5%)

Query  25   AQQVTTNKDGTKTVVSYRFNDEGKKVKVTRRIKTTVVREHVNPQVAERRSWAKFGLEKGH  84
              ++  N+DGTKTV+ YR N++GKKVKVTR I+ T V+E VN  VAER+ WAKFG EKG 
Sbjct  1    PPEIIENEDGTKTVIEYRINEDGKKVKVTRTIRRTKVKEKVNKAVAERKKWAKFGDEKGD  60

Query  85   AAGPSFDTTSVGENIVFRPSVNWRVQAAEAEKAGPEKGSIKDQLKDKK--VKCRICSGEH  142
              GP+  TT+VGE +  + S N +    E E+  P     K +LK KK  VKCRIC G+H
Sbjct  61   PPGPNSATTTVGEEVFLKLSANKKSTEKEEEEEDP-----KAKLKSKKKLVKCRICKGDH  115

Query  143  FTARCPFKDTM  153
            +T++CP+KDT+
Sbjct  116  WTSKCPYKDTL  126


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 65.7 bits (161),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 39/62 (63%), Gaps = 1/62 (2%)

Query  212  LRVTNVSELAEESELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRTDAARACEKM  271
            L V N+     E +L+DLF +FG +  + L RD ET R+KGFAF+ F D  DA +A E +
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  272  DG  273
            +G
Sbjct  60   NG  61



Lambda      K        H        a         alpha
   0.318    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00017908

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463545 pfam12353, eIF3g, Eukaryotic translation initiation fa...  200     1e-66


>CDD:463545 pfam12353, eIF3g, Eukaryotic translation initiation factor 3 
subunit G.  This domain family is found in eukaryotes, and is 
approximately 130 amino acids in length. The family is found 
in association with pfam00076. This family is subunit G of 
the eukaryotic translation initiation factor 3. Subunit G 
is required for eIF3 integrity.
Length=126

 Score = 200 bits (510),  Expect = 1e-66, Method: Composition-based stats.
 Identities = 67/131 (51%), Positives = 89/131 (68%), Gaps = 7/131 (5%)

Query  25   AQQVTTNKDGTKTVVSYRFNDEGKKVKVTRRIKTTVVREHVNPQVAERRSWAKFGLEKGH  84
              ++  N+DGTKTV+ YR N++GKKVKVTR I+ T V+E VN  VAER+ WAKFG EKG 
Sbjct  1    PPEIIENEDGTKTVIEYRINEDGKKVKVTRTIRRTKVKEKVNKAVAERKKWAKFGDEKGD  60

Query  85   AAGPSFDTTSVGENIVFRPSVNWRVQAAEAEKAGPEKGSIKDQLKDKK--VKCRICSGEH  142
              GP+  TT+VGE +  + S N +    E E+  P     K +LK KK  VKCRIC G+H
Sbjct  61   PPGPNSATTTVGEEVFLKLSANKKSTEKEEEEEDP-----KAKLKSKKKLVKCRICKGDH  115

Query  143  FTARCPFKDTM  153
            +T++CP+KDT+
Sbjct  116  WTSKCPYKDTL  126



Lambda      K        H        a         alpha
   0.314    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00011808

Length=91
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  61.5    5e-15


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 61.5 bits (150),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 29/71 (41%), Positives = 41/71 (58%), Gaps = 1/71 (1%)

Query  13  LRVTNVSELAEESELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRTDAARACEKM  72
           L V N+     E +L+DLF +FG +  + L RD ET R+KGFAF+ F D  DA +A E +
Sbjct  1   LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  73  DGFGYRHLILR  83
           +G       L+
Sbjct  60  NGKELGGRELK  70



Lambda      K        H        a         alpha
   0.326    0.137    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00017909

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00011809

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00017910

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00017911

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding f...  128     6e-35


>CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding family. 
 This family includes the DNA-binding region of NDT80 as well 
as PhoG and its homologs. The family contains VIB-1. VIB-1 
is thought to be a regulator of conidiation in Neurospora crassa 
and shares a region of similarity to PHOG, a possible 
phosphate nonrepressible acid phosphatase in Aspergillus nidulans. 
It has been found that vib-1 is not the structural gene 
for nonrepressible acid phosphatase, but rather may regulate 
nonrepressible acid phosphatase activity.
Length=180

 Score = 128 bits (324),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 96/206 (47%), Gaps = 37/206 (18%)

Query  260  WTCYRRNYFSVSCSFSLHPW--TRAPLYLKLSDQT----TERILKFSMCISAVVNAQYGE  313
            WTCYRRNYF V+ SF+L  +       ++  + Q+       I  F++ ISA  N+    
Sbjct  2    WTCYRRNYFQVTASFTLPGFSPPTFVKHVFTTLQSGSGERVPIKYFALKISATKNSADNS  61

Query  314  TRELVQHTPKRDKQSERKPGKVVLQPCQPPPPLLLNHGAANSGGGQHAFALNSQSAALSM  373
              ELVQHT KRDK  +  P  V                            +        +
Sbjct  62   PIELVQHTAKRDKGPQFAPVIVP--------------------------LVPGPLPPHQL  95

Query  374  DYSSS-YTGAPQQSQPPTQHTFERIQFQKATANNGKRRAQQQYYNLVVELYAEITNPNNG  432
               +S      +  +  T  T ER+QF+ ATANNG+R+  QQY+ LVV+L A     +  
Sbjct  96   IREASNVRNNSKMDEIKTVVTVERLQFKSATANNGRRKGLQQYFVLVVKLGAI----HTL  151

Query  433  SETQWMKVARKLSHPMVVRGRSPGHY  458
            S+   + +A  +S P++VRGRSPG+Y
Sbjct  152  SDGTKICLAELVSPPIIVRGRSPGNY  177



Lambda      K        H        a         alpha
   0.313    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 845054670


Query= TCONS_00011810

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00011813

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding f...  128     6e-35


>CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding family. 
 This family includes the DNA-binding region of NDT80 as well 
as PhoG and its homologs. The family contains VIB-1. VIB-1 
is thought to be a regulator of conidiation in Neurospora crassa 
and shares a region of similarity to PHOG, a possible 
phosphate nonrepressible acid phosphatase in Aspergillus nidulans. 
It has been found that vib-1 is not the structural gene 
for nonrepressible acid phosphatase, but rather may regulate 
nonrepressible acid phosphatase activity.
Length=180

 Score = 128 bits (324),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 96/206 (47%), Gaps = 37/206 (18%)

Query  260  WTCYRRNYFSVSCSFSLHPW--TRAPLYLKLSDQT----TERILKFSMCISAVVNAQYGE  313
            WTCYRRNYF V+ SF+L  +       ++  + Q+       I  F++ ISA  N+    
Sbjct  2    WTCYRRNYFQVTASFTLPGFSPPTFVKHVFTTLQSGSGERVPIKYFALKISATKNSADNS  61

Query  314  TRELVQHTPKRDKQSERKPGKVVLQPCQPPPPLLLNHGAANSGGGQHAFALNSQSAALSM  373
              ELVQHT KRDK  +  P  V                            +        +
Sbjct  62   PIELVQHTAKRDKGPQFAPVIVP--------------------------LVPGPLPPHQL  95

Query  374  DYSSS-YTGAPQQSQPPTQHTFERIQFQKATANNGKRRAQQQYYNLVVELYAEITNPNNG  432
               +S      +  +  T  T ER+QF+ ATANNG+R+  QQY+ LVV+L A     +  
Sbjct  96   IREASNVRNNSKMDEIKTVVTVERLQFKSATANNGRRKGLQQYFVLVVKLGAI----HTL  151

Query  433  SETQWMKVARKLSHPMVVRGRSPGHY  458
            S+   + +A  +S P++VRGRSPG+Y
Sbjct  152  SDGTKICLAELVSPPIIVRGRSPGNY  177



Lambda      K        H        a         alpha
   0.313    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 845054670


Query= TCONS_00017912

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding f...  128     6e-35


>CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding family. 
 This family includes the DNA-binding region of NDT80 as well 
as PhoG and its homologs. The family contains VIB-1. VIB-1 
is thought to be a regulator of conidiation in Neurospora crassa 
and shares a region of similarity to PHOG, a possible 
phosphate nonrepressible acid phosphatase in Aspergillus nidulans. 
It has been found that vib-1 is not the structural gene 
for nonrepressible acid phosphatase, but rather may regulate 
nonrepressible acid phosphatase activity.
Length=180

 Score = 128 bits (324),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 96/206 (47%), Gaps = 37/206 (18%)

Query  260  WTCYRRNYFSVSCSFSLHPW--TRAPLYLKLSDQT----TERILKFSMCISAVVNAQYGE  313
            WTCYRRNYF V+ SF+L  +       ++  + Q+       I  F++ ISA  N+    
Sbjct  2    WTCYRRNYFQVTASFTLPGFSPPTFVKHVFTTLQSGSGERVPIKYFALKISATKNSADNS  61

Query  314  TRELVQHTPKRDKQSERKPGKVVLQPCQPPPPLLLNHGAANSGGGQHAFALNSQSAALSM  373
              ELVQHT KRDK  +  P  V                            +        +
Sbjct  62   PIELVQHTAKRDKGPQFAPVIVP--------------------------LVPGPLPPHQL  95

Query  374  DYSSS-YTGAPQQSQPPTQHTFERIQFQKATANNGKRRAQQQYYNLVVELYAEITNPNNG  432
               +S      +  +  T  T ER+QF+ ATANNG+R+  QQY+ LVV+L A     +  
Sbjct  96   IREASNVRNNSKMDEIKTVVTVERLQFKSATANNGRRKGLQQYFVLVVKLGAI----HTL  151

Query  433  SETQWMKVARKLSHPMVVRGRSPGHY  458
            S+   + +A  +S P++VRGRSPG+Y
Sbjct  152  SDGTKICLAELVSPPIIVRGRSPGNY  177



Lambda      K        H        a         alpha
   0.313    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 845054670


Query= TCONS_00017913

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00011814

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding f...  128     6e-35


>CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding family. 
 This family includes the DNA-binding region of NDT80 as well 
as PhoG and its homologs. The family contains VIB-1. VIB-1 
is thought to be a regulator of conidiation in Neurospora crassa 
and shares a region of similarity to PHOG, a possible 
phosphate nonrepressible acid phosphatase in Aspergillus nidulans. 
It has been found that vib-1 is not the structural gene 
for nonrepressible acid phosphatase, but rather may regulate 
nonrepressible acid phosphatase activity.
Length=180

 Score = 128 bits (324),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 96/206 (47%), Gaps = 37/206 (18%)

Query  260  WTCYRRNYFSVSCSFSLHPW--TRAPLYLKLSDQT----TERILKFSMCISAVVNAQYGE  313
            WTCYRRNYF V+ SF+L  +       ++  + Q+       I  F++ ISA  N+    
Sbjct  2    WTCYRRNYFQVTASFTLPGFSPPTFVKHVFTTLQSGSGERVPIKYFALKISATKNSADNS  61

Query  314  TRELVQHTPKRDKQSERKPGKVVLQPCQPPPPLLLNHGAANSGGGQHAFALNSQSAALSM  373
              ELVQHT KRDK  +  P  V                            +        +
Sbjct  62   PIELVQHTAKRDKGPQFAPVIVP--------------------------LVPGPLPPHQL  95

Query  374  DYSSS-YTGAPQQSQPPTQHTFERIQFQKATANNGKRRAQQQYYNLVVELYAEITNPNNG  432
               +S      +  +  T  T ER+QF+ ATANNG+R+  QQY+ LVV+L A     +  
Sbjct  96   IREASNVRNNSKMDEIKTVVTVERLQFKSATANNGRRKGLQQYFVLVVKLGAI----HTL  151

Query  433  SETQWMKVARKLSHPMVVRGRSPGHY  458
            S+   + +A  +S P++VRGRSPG+Y
Sbjct  152  SDGTKICLAELVSPPIIVRGRSPGNY  177



Lambda      K        H        a         alpha
   0.313    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 845054670


Query= TCONS_00011815

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding f...  128     6e-35


>CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding family. 
 This family includes the DNA-binding region of NDT80 as well 
as PhoG and its homologs. The family contains VIB-1. VIB-1 
is thought to be a regulator of conidiation in Neurospora crassa 
and shares a region of similarity to PHOG, a possible 
phosphate nonrepressible acid phosphatase in Aspergillus nidulans. 
It has been found that vib-1 is not the structural gene 
for nonrepressible acid phosphatase, but rather may regulate 
nonrepressible acid phosphatase activity.
Length=180

 Score = 128 bits (324),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 100/205 (49%), Gaps = 35/205 (17%)

Query  224  WTCYRRNYFSVSCSFSLHPW--TRAPLYLKLSDQT----TERILKFSMCISAVVNAQYGE  277
            WTCYRRNYF V+ SF+L  +       ++  + Q+       I  F++ ISA  N+    
Sbjct  2    WTCYRRNYFQVTASFTLPGFSPPTFVKHVFTTLQSGSGERVPIKYFALKISATKNSADNS  61

Query  278  TRELVQHTPKRDKQSERKPGKVVLQPCQPPPPLLLNHGAANSGGGQHAFALNSQSAALSM  337
              ELVQHT KRDK  +  P  +V     P PP  L   A+N                  M
Sbjct  62   PIELVQHTAKRDKGPQFAP-VIVPLVPGPLPPHQLIREASNVRNNS------------KM  108

Query  338  DYSSSYTGAPQQSQPPTQHTFERIQFQKATANNGKRRAQQQYYNLVVELYAEITNPNNGS  397
            D   +              T ER+QF+ ATANNG+R+  QQY+ LVV+L A     +  S
Sbjct  109  DEIKTV------------VTVERLQFKSATANNGRRKGLQQYFVLVVKLGAI----HTLS  152

Query  398  ETQWMKVARKLSHPMVVRGRSPGHY  422
            +   + +A  +S P++VRGRSPG+Y
Sbjct  153  DGTKICLAELVSPPIIVRGRSPGNY  177



Lambda      K        H        a         alpha
   0.313    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00011816

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding f...  128     6e-35


>CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding family. 
 This family includes the DNA-binding region of NDT80 as well 
as PhoG and its homologs. The family contains VIB-1. VIB-1 
is thought to be a regulator of conidiation in Neurospora crassa 
and shares a region of similarity to PHOG, a possible 
phosphate nonrepressible acid phosphatase in Aspergillus nidulans. 
It has been found that vib-1 is not the structural gene 
for nonrepressible acid phosphatase, but rather may regulate 
nonrepressible acid phosphatase activity.
Length=180

 Score = 128 bits (323),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 100/205 (49%), Gaps = 35/205 (17%)

Query  176  WTCYRRNYFSVSCSFSLHPW--TRAPLYLKLSDQT----TERILKFSMCISAVVNAQYGE  229
            WTCYRRNYF V+ SF+L  +       ++  + Q+       I  F++ ISA  N+    
Sbjct  2    WTCYRRNYFQVTASFTLPGFSPPTFVKHVFTTLQSGSGERVPIKYFALKISATKNSADNS  61

Query  230  TRELVQHTPKRDKQSERKPGKVVLQPCQPPPPLLLNHGAANSGGGQHAFALNSQSAALSM  289
              ELVQHT KRDK  +  P  +V     P PP  L   A+N                  M
Sbjct  62   PIELVQHTAKRDKGPQFAP-VIVPLVPGPLPPHQLIREASNVRNNS------------KM  108

Query  290  DYSSSYTGAPQQSQPPTQHTFERIQFQKATANNGKRRAQQQYYNLVVELYAEITNPNNGS  349
            D   +              T ER+QF+ ATANNG+R+  QQY+ LVV+L A     +  S
Sbjct  109  DEIKTV------------VTVERLQFKSATANNGRRKGLQQYFVLVVKLGAI----HTLS  152

Query  350  ETQWMKVARKLSHPMVVRGRSPGHY  374
            +   + +A  +S P++VRGRSPG+Y
Sbjct  153  DGTKICLAELVSPPIIVRGRSPGNY  177



Lambda      K        H        a         alpha
   0.314    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 732269720


Query= TCONS_00017914

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding f...  128     6e-35


>CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding family. 
 This family includes the DNA-binding region of NDT80 as well 
as PhoG and its homologs. The family contains VIB-1. VIB-1 
is thought to be a regulator of conidiation in Neurospora crassa 
and shares a region of similarity to PHOG, a possible 
phosphate nonrepressible acid phosphatase in Aspergillus nidulans. 
It has been found that vib-1 is not the structural gene 
for nonrepressible acid phosphatase, but rather may regulate 
nonrepressible acid phosphatase activity.
Length=180

 Score = 128 bits (323),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 100/205 (49%), Gaps = 35/205 (17%)

Query  176  WTCYRRNYFSVSCSFSLHPW--TRAPLYLKLSDQT----TERILKFSMCISAVVNAQYGE  229
            WTCYRRNYF V+ SF+L  +       ++  + Q+       I  F++ ISA  N+    
Sbjct  2    WTCYRRNYFQVTASFTLPGFSPPTFVKHVFTTLQSGSGERVPIKYFALKISATKNSADNS  61

Query  230  TRELVQHTPKRDKQSERKPGKVVLQPCQPPPPLLLNHGAANSGGGQHAFALNSQSAALSM  289
              ELVQHT KRDK  +  P  +V     P PP  L   A+N                  M
Sbjct  62   PIELVQHTAKRDKGPQFAP-VIVPLVPGPLPPHQLIREASNVRNNS------------KM  108

Query  290  DYSSSYTGAPQQSQPPTQHTFERIQFQKATANNGKRRAQQQYYNLVVELYAEITNPNNGS  349
            D   +              T ER+QF+ ATANNG+R+  QQY+ LVV+L A     +  S
Sbjct  109  DEIKTV------------VTVERLQFKSATANNGRRKGLQQYFVLVVKLGAI----HTLS  152

Query  350  ETQWMKVARKLSHPMVVRGRSPGHY  374
            +   + +A  +S P++VRGRSPG+Y
Sbjct  153  DGTKICLAELVSPPIIVRGRSPGNY  177



Lambda      K        H        a         alpha
   0.314    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 732269720


Query= TCONS_00017915

Length=605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding f...  128     6e-35


>CDD:398753 pfam05224, NDT80_PhoG, NDT80 / PhoG like DNA-binding family. 
 This family includes the DNA-binding region of NDT80 as well 
as PhoG and its homologs. The family contains VIB-1. VIB-1 
is thought to be a regulator of conidiation in Neurospora crassa 
and shares a region of similarity to PHOG, a possible 
phosphate nonrepressible acid phosphatase in Aspergillus nidulans. 
It has been found that vib-1 is not the structural gene 
for nonrepressible acid phosphatase, but rather may regulate 
nonrepressible acid phosphatase activity.
Length=180

 Score = 128 bits (323),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 96/206 (47%), Gaps = 37/206 (18%)

Query  199  WTCYRRNYFSVSCSFSLHPW--TRAPLYLKLSDQT----TERILKFSMCISAVVNAQYGE  252
            WTCYRRNYF V+ SF+L  +       ++  + Q+       I  F++ ISA  N+    
Sbjct  2    WTCYRRNYFQVTASFTLPGFSPPTFVKHVFTTLQSGSGERVPIKYFALKISATKNSADNS  61

Query  253  TRELVQHTPKRDKQSERKPGKVVLQPCQPPPPLLLNHGAANSGGGQHAFALNSQSAALSM  312
              ELVQHT KRDK  +  P  V                            +        +
Sbjct  62   PIELVQHTAKRDKGPQFAPVIVP--------------------------LVPGPLPPHQL  95

Query  313  DYSSS-YTGAPQQSQPPTQHTFERIQFQKATANNGKRRAQQQYYNLVVELYAEITNPNNG  371
               +S      +  +  T  T ER+QF+ ATANNG+R+  QQY+ LVV+L A     +  
Sbjct  96   IREASNVRNNSKMDEIKTVVTVERLQFKSATANNGRRKGLQQYFVLVVKLGAI----HTL  151

Query  372  SETQWMKVARKLSHPMVVRGRSPGHY  397
            S+   + +A  +S P++VRGRSPG+Y
Sbjct  152  SDGTKICLAELVSPPIIVRGRSPGNY  177



Lambda      K        H        a         alpha
   0.315    0.130    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 766641564


Query= TCONS_00011818

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00011819

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00011820

Length=327


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00011821

Length=285


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00017917

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00011823

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.147    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00011824

Length=604
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DU...  61.2    6e-13


>CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DUF2415). 
 This is a short, 30 residue domain, from a family of proteins 
conserved in fungi. The function is unknown. There is a 
characteristic DLL sequence motif.
Length=43

 Score = 61.2 bits (149),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 17/43 (40%), Positives = 23/43 (53%), Gaps = 2/43 (5%)

Query  186  GAVRCMAFAPEPW--DLLVWLEDKGRAGVADVRQAFIRRQILN  226
            GA R   F+PE    DLLV  E  GR  + D+R  F+  Q++ 
Sbjct  1    GAFRVCKFSPESGLNDLLVISEHVGRVHLVDLRTGFMNHQVIV  43



Lambda      K        H        a         alpha
   0.316    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 765147136


Query= TCONS_00011825

Length=728
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DU...  61.2    7e-13


>CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DUF2415). 
 This is a short, 30 residue domain, from a family of proteins 
conserved in fungi. The function is unknown. There is a 
characteristic DLL sequence motif.
Length=43

 Score = 61.2 bits (149),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 17/43 (40%), Positives = 23/43 (53%), Gaps = 2/43 (5%)

Query  337  GAVRCMAFAPEPW--DLLVWLEDKGRAGVADVRQAFIRRQILN  377
            GA R   F+PE    DLLV  E  GR  + D+R  F+  Q++ 
Sbjct  1    GAFRVCKFSPESGLNDLLVISEHVGRVHLVDLRTGFMNHQVIV  43



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 922566368


Query= TCONS_00017918

Length=755
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DU...  61.6    6e-13


>CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DUF2415). 
 This is a short, 30 residue domain, from a family of proteins 
conserved in fungi. The function is unknown. There is a 
characteristic DLL sequence motif.
Length=43

 Score = 61.6 bits (150),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 17/43 (40%), Positives = 23/43 (53%), Gaps = 2/43 (5%)

Query  337  GAVRCMAFAPEPW--DLLVWLEDKGRAGVADVRQAFIRRQILN  377
            GA R   F+PE    DLLV  E  GR  + D+R  F+  Q++ 
Sbjct  1    GAFRVCKFSPESGLNDLLVISEHVGRVHLVDLRTGFMNHQVIV  43



Lambda      K        H        a         alpha
   0.317    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 961855472


Query= TCONS_00017919

Length=604
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DU...  61.2    6e-13


>CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DUF2415). 
 This is a short, 30 residue domain, from a family of proteins 
conserved in fungi. The function is unknown. There is a 
characteristic DLL sequence motif.
Length=43

 Score = 61.2 bits (149),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 17/43 (40%), Positives = 23/43 (53%), Gaps = 2/43 (5%)

Query  186  GAVRCMAFAPEPW--DLLVWLEDKGRAGVADVRQAFIRRQILN  226
            GA R   F+PE    DLLV  E  GR  + D+R  F+  Q++ 
Sbjct  1    GAFRVCKFSPESGLNDLLVISEHVGRVHLVDLRTGFMNHQVIV  43



Lambda      K        H        a         alpha
   0.316    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 765147136


Query= TCONS_00017920

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DU...  61.6    5e-13


>CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DUF2415). 
 This is a short, 30 residue domain, from a family of proteins 
conserved in fungi. The function is unknown. There is a 
characteristic DLL sequence motif.
Length=43

 Score = 61.6 bits (150),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 17/43 (40%), Positives = 23/43 (53%), Gaps = 2/43 (5%)

Query  152  GAVRCMAFAPEPW--DLLVWLEDKGRAGVADVRQAFIRRQILN  192
            GA R   F+PE    DLLV  E  GR  + D+R  F+  Q++ 
Sbjct  1    GAFRVCKFSPESGLNDLLVISEHVGRVHLVDLRTGFMNHQVIV  43



Lambda      K        H        a         alpha
   0.315    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684357832


Query= TCONS_00011826

Length=604
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DU...  61.2    6e-13


>CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DUF2415). 
 This is a short, 30 residue domain, from a family of proteins 
conserved in fungi. The function is unknown. There is a 
characteristic DLL sequence motif.
Length=43

 Score = 61.2 bits (149),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 17/43 (40%), Positives = 23/43 (53%), Gaps = 2/43 (5%)

Query  186  GAVRCMAFAPEPW--DLLVWLEDKGRAGVADVRQAFIRRQILN  226
            GA R   F+PE    DLLV  E  GR  + D+R  F+  Q++ 
Sbjct  1    GAFRVCKFSPESGLNDLLVISEHVGRVHLVDLRTGFMNHQVIV  43



Lambda      K        H        a         alpha
   0.316    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 765147136


Query= TCONS_00017921

Length=395


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00011827

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DU...  61.6    4e-13


>CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DUF2415). 
 This is a short, 30 residue domain, from a family of proteins 
conserved in fungi. The function is unknown. There is a 
characteristic DLL sequence motif.
Length=43

 Score = 61.6 bits (150),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 17/43 (40%), Positives = 23/43 (53%), Gaps = 2/43 (5%)

Query  152  GAVRCMAFAPEPW--DLLVWLEDKGRAGVADVRQAFIRRQILN  192
            GA R   F+PE    DLLV  E  GR  + D+R  F+  Q++ 
Sbjct  1    GAFRVCKFSPESGLNDLLVISEHVGRVHLVDLRTGFMNHQVIV  43



Lambda      K        H        a         alpha
   0.316    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00017922

Length=1007
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465562 pfam17911, Ski2_N, Ski2 N-terminal region. This region...  148     2e-42
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  120     8e-32
CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain...  106     9e-26


>CDD:465562 pfam17911, Ski2_N, Ski2 N-terminal region.  This region is the 
N-terminal extended region found in the Ski2 protein. The 
Ski complex is a conserved multiprotein assembly required for 
the cytoplasmic functions of the exosome, including RNA turnover, 
surveillance, and interference. Ski2, Ski3, and Ski8 
assemble in a tetramer with 1:1:2 stoichiometry.
Length=134

 Score = 148 bits (377),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 62/149 (42%), Positives = 86/149 (58%), Gaps = 16/149 (11%)

Query  73   NRLQKRWDVPVNYTDLYEIAPTQTRTIVRFTREGLEGRVTGYHEV-TVPAAAANAKNSTS  131
            ++ Q+ WD   +Y  L +I P+ +RT +RF R+GLEG++ GY EV  V  + A AKNS S
Sbjct  1    DKAQRHWDRDKDYKSLLKIPPSPSRTTLRFKRDGLEGKIVGYKEVSLVEISNATAKNSLS  60

Query  132  LLRRPAGRADFVRGAAGFFPFAPGGLDGVEAIAEMESEAQAAERSKTGGKQSGLDRIINF  191
            L R+P  ++DFVRG++   PFAPGGLD  E + + E               SGL R+   
Sbjct  61   LNRKPGPKSDFVRGSSSNLPFAPGGLD-EEVLKDSEG------------VDSGLKRLHRD  107

Query  192  GAEGGLLEIAPGCSRGLQFEATKTKETAE  220
              EGGLL++ PG SRGL F   +  +  E
Sbjct  108  --EGGLLDVPPGFSRGLDFGEDEETDDDE  134


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 120 bits (302),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 40/161 (25%), Positives = 73/161 (45%), Gaps = 14/161 (9%)

Query  328  QKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALASKHM---TKAIYTSPIKALSNQKFR  384
            Q EA+  +  G  V V A T +GKT+        A   +    +A+  +P + L+ Q + 
Sbjct  4    QAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYE  63

Query  385  DFRTEFDDVGI----LTGDVQINPEAS------CLIMTTEILRSMLYRGADLIRDVEFVI  434
            + +     +G+    L G      +         L+ T   L  +L     L+++++ ++
Sbjct  64   ELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RKLLKNLKLLV  122

Query  435  FDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYE  475
             DE H + D+  G   EE++  LP+   ++LLSAT+P   E
Sbjct  123  LDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLE  163


>CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain.  Mtr4 
is the essential RNA helicase, and is an exosome-activating 
cofactor. This arch domain is carried in Mtr4 and Ski2 (the 
cytosolic homolog of Mtr4). The arch domain is required for 
proper 5.8S rRNA processing, and appears to function independently 
of canonical helicase activity.
Length=267

 Score = 106 bits (266),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 51/177 (29%), Positives = 78/177 (44%), Gaps = 13/177 (7%)

Query  825  EEMIKRSFSENATQALLPEHEKQVQLSEASLAKIKREPCDICDIDLVACHDAAIEYEKLT  884
            E M+KRSFS+   QA LPE EK+++  E  LA IK       + D+   +D   + EKL 
Sbjct  1    EYMLKRSFSQFQNQASLPELEKKLKELEKELASIKIP----DEEDIKEYYDLRQQLEKLN  56

Query  885  SELHVGLLASPVGKRLFMPKRLVVYRKDGFR--TAGIIVREG--VGGGATPNIQVLEIGK  940
             ++   +L  P G     P RLVV + +G +    G++V        G     Q   I  
Sbjct  57   EDIREVILHPPYGLPFLQPGRLVVVKDNGDQDFGWGVVVNFKKRKKNGKAEPPQESYIVD  116

Query  941  ----LSHRRHPSDILPFLPRFRHLLHPLPTRAADMTLKVCKIPLSDLECVTNTIVKV  993
                L+    P D+  F         P P        +V  +PLSD+E +++  +K+
Sbjct  117  VLLVLALVSSPEDLDKFNDVNPEGFRPAPPGEKGEM-EVVPVPLSDIEAISSVRLKL  172



Lambda      K        H        a         alpha
   0.318    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1289863036


Query= TCONS_00017923

Length=722
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DU...  61.6    7e-13


>CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DUF2415). 
 This is a short, 30 residue domain, from a family of proteins 
conserved in fungi. The function is unknown. There is a 
characteristic DLL sequence motif.
Length=43

 Score = 61.6 bits (150),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 17/43 (40%), Positives = 23/43 (53%), Gaps = 2/43 (5%)

Query  337  GAVRCMAFAPEPW--DLLVWLEDKGRAGVADVRQAFIRRQILN  377
            GA R   F+PE    DLLV  E  GR  + D+R  F+  Q++ 
Sbjct  1    GAFRVCKFSPESGLNDLLVISEHVGRVHLVDLRTGFMNHQVIV  43



Lambda      K        H        a         alpha
   0.316    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 913835456


Query= TCONS_00011828

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DU...  62.0    3e-13


>CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DUF2415). 
 This is a short, 30 residue domain, from a family of proteins 
conserved in fungi. The function is unknown. There is a 
characteristic DLL sequence motif.
Length=43

 Score = 62.0 bits (151),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 17/43 (40%), Positives = 23/43 (53%), Gaps = 2/43 (5%)

Query  337  GAVRCMAFAPEPW--DLLVWLEDKGRAGVADVRQAFIRRQILN  377
            GA R   F+PE    DLLV  E  GR  + D+R  F+  Q++ 
Sbjct  1    GAFRVCKFSPESGLNDLLVISEHVGRVHLVDLRTGFMNHQVIV  43



Lambda      K        H        a         alpha
   0.319    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00017924

Length=755
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DU...  61.6    7e-13


>CDD:402091 pfam10313, DUF2415, Uncharacterized protein domain (DUF2415). 
 This is a short, 30 residue domain, from a family of proteins 
conserved in fungi. The function is unknown. There is a 
characteristic DLL sequence motif.
Length=43

 Score = 61.6 bits (150),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 17/43 (40%), Positives = 23/43 (53%), Gaps = 2/43 (5%)

Query  337  GAVRCMAFAPEPW--DLLVWLEDKGRAGVADVRQAFIRRQILN  377
            GA R   F+PE    DLLV  E  GR  + D+R  F+  Q++ 
Sbjct  1    GAFRVCKFSPESGLNDLLVISEHVGRVHLVDLRTGFMNHQVIV  43



Lambda      K        H        a         alpha
   0.317    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 961855472


Query= TCONS_00017925

Length=1293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462374 pfam08148, DSHCT, DSHCT (NUC185) domain. This C termin...  212     3e-64
CDD:465562 pfam17911, Ski2_N, Ski2 N-terminal region. This region...  150     1e-42
CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain...  148     3e-40
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  119     2e-31


>CDD:462374 pfam08148, DSHCT, DSHCT (NUC185) domain.  This C terminal domain 
is found in DOB1/SK12/helY-like DEAD box helicases.
Length=154

 Score = 212 bits (543),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 100/170 (59%), Gaps = 17/170 (10%)

Query  1117  RVQLKGKVACEIHSADELVLTELILENVLAEYEPEEIVALLSAFVFQEKTENVPTLTPRL  1176
              V LKG+VACEI S +EL+LTEL+   V  + +PEE+ ALLSAFVF+EK       +P L
Sbjct  2     VVTLKGRVACEIRSENELLLTELLFSGVFDDLDPEELAALLSAFVFEEKRREPYLPSPEL  61

Query  1177  EKGKEAIIRIAEKVNDLQIQYQVIQSSEDSNDFASQPRFGLAEVVYEWAKGMSFNRITDL  1236
              +    +  IA ++                   +    FGL EVVY WA+G SF  I  L
Sbjct  62    AEALRLLEEIAHRI-----------------AVSRFLDFGLMEVVYAWARGASFAEICKL  104

Query  1237  TDVMEGTIVRTITRLDETCREVRNAAKLVGDPTLYAKMQHAQELIKRDVI  1286
             TD+ EG IVR I RLDE  R++ NAAK++GDP L  K + A ELIKRD++
Sbjct  105   TDLDEGDIVRLIRRLDELLRQIANAAKIIGDPELREKAEEAIELIKRDIV  154


>CDD:465562 pfam17911, Ski2_N, Ski2 N-terminal region.  This region is the 
N-terminal extended region found in the Ski2 protein. The 
Ski complex is a conserved multiprotein assembly required for 
the cytoplasmic functions of the exosome, including RNA turnover, 
surveillance, and interference. Ski2, Ski3, and Ski8 
assemble in a tetramer with 1:1:2 stoichiometry.
Length=134

 Score = 150 bits (380),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 62/149 (42%), Positives = 86/149 (58%), Gaps = 16/149 (11%)

Query  73   NRLQKRWDVPVNYTDLYEIAPTQTRTIVRFTREGLEGRVTGYHEV-TVPAAAANAKNSTS  131
            ++ Q+ WD   +Y  L +I P+ +RT +RF R+GLEG++ GY EV  V  + A AKNS S
Sbjct  1    DKAQRHWDRDKDYKSLLKIPPSPSRTTLRFKRDGLEGKIVGYKEVSLVEISNATAKNSLS  60

Query  132  LLRRPAGRADFVRGAAGFFPFAPGGLDGVEAIAEMESEAQAAERSKTGGKQSGLDRIINF  191
            L R+P  ++DFVRG++   PFAPGGLD  E + + E               SGL R+   
Sbjct  61   LNRKPGPKSDFVRGSSSNLPFAPGGLD-EEVLKDSEG------------VDSGLKRLHRD  107

Query  192  GAEGGLLEIAPGCSRGLQFEATKTKETAE  220
              EGGLL++ PG SRGL F   +  +  E
Sbjct  108  --EGGLLDVPPGFSRGLDFGEDEETDDDE  134


>CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain.  Mtr4 
is the essential RNA helicase, and is an exosome-activating 
cofactor. This arch domain is carried in Mtr4 and Ski2 (the 
cytosolic homolog of Mtr4). The arch domain is required for 
proper 5.8S rRNA processing, and appears to function independently 
of canonical helicase activity.
Length=267

 Score = 148 bits (375),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 70/276 (25%), Positives = 124/276 (45%), Gaps = 19/276 (7%)

Query  825   EEMIKRSFSENATQALLPEHEKQVQLSEASLAKIKREPCDICDIDLVACHDAAIEYEKLT  884
             E M+KRSFS+   QA LPE EK+++  E  LA IK       + D+   +D   + EKL 
Sbjct  1     EYMLKRSFSQFQNQASLPELEKKLKELEKELASIKIP----DEEDIKEYYDLRQQLEKLN  56

Query  885   SELHVGLLASPVGKRLFMPKRLVVYRKDGFR--TAGIIVREG--VGGGATPNIQVLEIGK  940
              ++   +L  P G     P RLVV + +G +    G++V        G     Q   I  
Sbjct  57    EDIREVILHPPYGLPFLQPGRLVVVKDNGDQDFGWGVVVNFKKRKKNGKAEPPQESYIVD  116

Query  941   ----LSHRRHPSDILPFLPRFRHLLHPLPTRAADMTLKVCKIPLSDLECVTNTIVKVGGP  996
                 L+    P D+  F         P P        +V  +PLSD+E +++  +K+   
Sbjct  117   VLLVLALVSSPEDLDKFNDVNPEGFRPAPPGEKGEM-EVVPVPLSDIEAISSVRLKLPKD  175

Query  997   TWYLNIKKEAIKFADKELSKLCASWTSPI--WDEMDWARIKELQVRDILEKRQAQAAITQ  1054
                    +EA+  A +EL +        +   ++M    IK+ + +++L K +   +  +
Sbjct  176   LRPAE-AREAVLKALQELKRRFPDGIPLLDPIEDMK---IKDDEFKELLRKIEVLESRLE  231

Query  1055  SCRCLQCPSFMKHFEMQHDEWQVKENISQLKQLMSD  1090
             S    + P   + + + H++ +++E I +LK+ +SD
Sbjct  232   SHPLHKSPRLEELYALYHEKVELQEEIKELKKEISD  267


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 119 bits (301),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 40/161 (25%), Positives = 73/161 (45%), Gaps = 14/161 (9%)

Query  328  QKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALASKHM---TKAIYTSPIKALSNQKFR  384
            Q EA+  +  G  V V A T +GKT+        A   +    +A+  +P + L+ Q + 
Sbjct  4    QAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYE  63

Query  385  DFRTEFDDVGI----LTGDVQINPEAS------CLIMTTEILRSMLYRGADLIRDVEFVI  434
            + +     +G+    L G      +         L+ T   L  +L     L+++++ ++
Sbjct  64   ELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RKLLKNLKLLV  122

Query  435  FDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYE  475
             DE H + D+  G   EE++  LP+   ++LLSAT+P   E
Sbjct  123  LDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLE  163



Lambda      K        H        a         alpha
   0.318    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1645037000


Query= TCONS_00011830

Length=389


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00011831

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00017926

Length=926
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465562 pfam17911, Ski2_N, Ski2 N-terminal region. This region...  148     2e-42
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  120     7e-32
CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain...  91.2    1e-20


>CDD:465562 pfam17911, Ski2_N, Ski2 N-terminal region.  This region is the 
N-terminal extended region found in the Ski2 protein. The 
Ski complex is a conserved multiprotein assembly required for 
the cytoplasmic functions of the exosome, including RNA turnover, 
surveillance, and interference. Ski2, Ski3, and Ski8 
assemble in a tetramer with 1:1:2 stoichiometry.
Length=134

 Score = 148 bits (377),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 62/149 (42%), Positives = 86/149 (58%), Gaps = 16/149 (11%)

Query  73   NRLQKRWDVPVNYTDLYEIAPTQTRTIVRFTREGLEGRVTGYHEV-TVPAAAANAKNSTS  131
            ++ Q+ WD   +Y  L +I P+ +RT +RF R+GLEG++ GY EV  V  + A AKNS S
Sbjct  1    DKAQRHWDRDKDYKSLLKIPPSPSRTTLRFKRDGLEGKIVGYKEVSLVEISNATAKNSLS  60

Query  132  LLRRPAGRADFVRGAAGFFPFAPGGLDGVEAIAEMESEAQAAERSKTGGKQSGLDRIINF  191
            L R+P  ++DFVRG++   PFAPGGLD  E + + E               SGL R+   
Sbjct  61   LNRKPGPKSDFVRGSSSNLPFAPGGLD-EEVLKDSEG------------VDSGLKRLHRD  107

Query  192  GAEGGLLEIAPGCSRGLQFEATKTKETAE  220
              EGGLL++ PG SRGL F   +  +  E
Sbjct  108  --EGGLLDVPPGFSRGLDFGEDEETDDDE  134


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 120 bits (302),  Expect = 7e-32, Method: Composition-based stats.
 Identities = 40/161 (25%), Positives = 73/161 (45%), Gaps = 14/161 (9%)

Query  328  QKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALASKHM---TKAIYTSPIKALSNQKFR  384
            Q EA+  +  G  V V A T +GKT+        A   +    +A+  +P + L+ Q + 
Sbjct  4    QAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYE  63

Query  385  DFRTEFDDVGI----LTGDVQINPEAS------CLIMTTEILRSMLYRGADLIRDVEFVI  434
            + +     +G+    L G      +         L+ T   L  +L     L+++++ ++
Sbjct  64   ELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RKLLKNLKLLV  122

Query  435  FDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYE  475
             DE H + D+  G   EE++  LP+   ++LLSAT+P   E
Sbjct  123  LDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLE  163


>CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain.  Mtr4 
is the essential RNA helicase, and is an exosome-activating 
cofactor. This arch domain is carried in Mtr4 and Ski2 (the 
cytosolic homolog of Mtr4). The arch domain is required for 
proper 5.8S rRNA processing, and appears to function independently 
of canonical helicase activity.
Length=267

 Score = 91.2 bits (227),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 4/86 (5%)

Query  825  EEMIKRSFSENATQALLPEHEKQVQLSEASLAKIKREPCDICDIDLVACHDAAIEYEKLT  884
            E M+KRSFS+   QA LPE EK+++  E  LA IK       + D+   +D   + EKL 
Sbjct  1    EYMLKRSFSQFQNQASLPELEKKLKELEKELASIKIP----DEEDIKEYYDLRQQLEKLN  56

Query  885  SELHVGLLASPVGKRLFMPKRLVVYR  910
             ++   +L  P G     P RLVV +
Sbjct  57   EDIREVILHPPYGLPFLQPGRLVVVK  82



Lambda      K        H        a         alpha
   0.318    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1192912134


Query= TCONS_00011833

Length=1314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462374 pfam08148, DSHCT, DSHCT (NUC185) domain. This C termin...  213     2e-64
CDD:465562 pfam17911, Ski2_N, Ski2 N-terminal region. This region...  150     1e-42
CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain...  136     5e-36
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  119     1e-31


>CDD:462374 pfam08148, DSHCT, DSHCT (NUC185) domain.  This C terminal domain 
is found in DOB1/SK12/helY-like DEAD box helicases.
Length=154

 Score = 213 bits (544),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 100/170 (59%), Gaps = 17/170 (10%)

Query  1138  RVQLKGKVACEIHSADELVLTELILENVLAEYEPEEIVALLSAFVFQEKTENVPTLTPRL  1197
              V LKG+VACEI S +EL+LTEL+   V  + +PEE+ ALLSAFVF+EK       +P L
Sbjct  2     VVTLKGRVACEIRSENELLLTELLFSGVFDDLDPEELAALLSAFVFEEKRREPYLPSPEL  61

Query  1198  EKGKEAIIRIAEKVNDLQIQYQVIQSSEDSNDFASQPRFGLAEVVYEWAKGMSFNRITDL  1257
              +    +  IA ++                   +    FGL EVVY WA+G SF  I  L
Sbjct  62    AEALRLLEEIAHRI-----------------AVSRFLDFGLMEVVYAWARGASFAEICKL  104

Query  1258  TDVMEGTIVRTITRLDETCREVRNAAKLVGDPTLYAKMQHAQELIKRDVI  1307
             TD+ EG IVR I RLDE  R++ NAAK++GDP L  K + A ELIKRD++
Sbjct  105   TDLDEGDIVRLIRRLDELLRQIANAAKIIGDPELREKAEEAIELIKRDIV  154


>CDD:465562 pfam17911, Ski2_N, Ski2 N-terminal region.  This region is the 
N-terminal extended region found in the Ski2 protein. The 
Ski complex is a conserved multiprotein assembly required for 
the cytoplasmic functions of the exosome, including RNA turnover, 
surveillance, and interference. Ski2, Ski3, and Ski8 
assemble in a tetramer with 1:1:2 stoichiometry.
Length=134

 Score = 150 bits (381),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 62/149 (42%), Positives = 86/149 (58%), Gaps = 16/149 (11%)

Query  73   NRLQKRWDVPVNYTDLYEIAPTQTRTIVRFTREGLEGRVTGYHEV-TVPAAAANAKNSTS  131
            ++ Q+ WD   +Y  L +I P+ +RT +RF R+GLEG++ GY EV  V  + A AKNS S
Sbjct  1    DKAQRHWDRDKDYKSLLKIPPSPSRTTLRFKRDGLEGKIVGYKEVSLVEISNATAKNSLS  60

Query  132  LLRRPAGRADFVRGAAGFFPFAPGGLDGVEAIAEMESEAQAAERSKTGGKQSGLDRIINF  191
            L R+P  ++DFVRG++   PFAPGGLD  E + + E               SGL R+   
Sbjct  61   LNRKPGPKSDFVRGSSSNLPFAPGGLD-EEVLKDSEG------------VDSGLKRLHRD  107

Query  192  GAEGGLLEIAPGCSRGLQFEATKTKETAE  220
              EGGLL++ PG SRGL F   +  +  E
Sbjct  108  --EGGLLDVPPGFSRGLDFGEDEETDDDE  134


>CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain.  Mtr4 
is the essential RNA helicase, and is an exosome-activating 
cofactor. This arch domain is carried in Mtr4 and Ski2 (the 
cytosolic homolog of Mtr4). The arch domain is required for 
proper 5.8S rRNA processing, and appears to function independently 
of canonical helicase activity.
Length=267

 Score = 136 bits (344),  Expect = 5e-36, Method: Composition-based stats.
 Identities = 70/297 (24%), Positives = 124/297 (42%), Gaps = 40/297 (13%)

Query  825   EEMIKRSFSENATQALLPEHEKQVQLSEASLAKIKREPCDICDIDLVACHDAAIEYEKLT  884
             E M+KRSFS+   QA LPE EK+++  E  LA IK       + D+   +D   + EKL 
Sbjct  1     EYMLKRSFSQFQNQASLPELEKKLKELEKELASIKIP----DEEDIKEYYDLRQQLEKLN  56

Query  885   SELHVGLLASPVGKRLFMPKRLVVYRKDGFR--TAGIIVREG--VGGGATPNIQVLEIGK  940
              ++   +L  P G     P RLVV + +G +    G++V        G     Q   I  
Sbjct  57    EDIREVILHPPYGLPFLQPGRLVVVKDNGDQDFGWGVVVNFKKRKKNGKAEPPQESYIVD  116

Query  941   ----LSHRRHPSDILPFLPRFRHLLHPLPTRAADMTLKVCKIPLSDLECVTNTIVKVGGP  996
                 L+    P D+  F         P P        +V  +PLSD+E +++  +K+   
Sbjct  117   VLLVLALVSSPEDLDKFNDVNPEGFRPAPPGEKGEM-EVVPVPLSDIEAISSVRLKLPKD  175

Query  997   TWYLNIKKEAIKFADKELSKLCASWTSPI--WDEMDWARIKELQVRDILEKRQAQAAITQ  1054
                    +EA+  A +EL +        +   ++M    IK+ + +++L K +   +  +
Sbjct  176   LRPAE-AREAVLKALQELKRRFPDGIPLLDPIEDMK---IKDDEFKELLRKIEVLESRLE  231

Query  1055  SCRCLQCPSFMKHVSCHRLYNWFLVNYIVPDFGQFEMQHDEWQVKENISQLKQLMSD  1111
             S    + P   +                      + + H++ +++E I +LK+ +SD
Sbjct  232   SHPLHKSPRLEEL---------------------YALYHEKVELQEEIKELKKEISD  267


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 119 bits (301),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 40/161 (25%), Positives = 73/161 (45%), Gaps = 14/161 (9%)

Query  328  QKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALASKHM---TKAIYTSPIKALSNQKFR  384
            Q EA+  +  G  V V A T +GKT+        A   +    +A+  +P + L+ Q + 
Sbjct  4    QAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYE  63

Query  385  DFRTEFDDVGI----LTGDVQINPEAS------CLIMTTEILRSMLYRGADLIRDVEFVI  434
            + +     +G+    L G      +         L+ T   L  +L     L+++++ ++
Sbjct  64   ELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RKLLKNLKLLV  122

Query  435  FDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYE  475
             DE H + D+  G   EE++  LP+   ++LLSAT+P   E
Sbjct  123  LDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLE  163



Lambda      K        H        a         alpha
   0.318    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1673945600


Query= TCONS_00011834

Length=1007
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465562 pfam17911, Ski2_N, Ski2 N-terminal region. This region...  148     2e-42
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  120     8e-32
CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain...  106     9e-26


>CDD:465562 pfam17911, Ski2_N, Ski2 N-terminal region.  This region is the 
N-terminal extended region found in the Ski2 protein. The 
Ski complex is a conserved multiprotein assembly required for 
the cytoplasmic functions of the exosome, including RNA turnover, 
surveillance, and interference. Ski2, Ski3, and Ski8 
assemble in a tetramer with 1:1:2 stoichiometry.
Length=134

 Score = 148 bits (377),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 62/149 (42%), Positives = 86/149 (58%), Gaps = 16/149 (11%)

Query  73   NRLQKRWDVPVNYTDLYEIAPTQTRTIVRFTREGLEGRVTGYHEV-TVPAAAANAKNSTS  131
            ++ Q+ WD   +Y  L +I P+ +RT +RF R+GLEG++ GY EV  V  + A AKNS S
Sbjct  1    DKAQRHWDRDKDYKSLLKIPPSPSRTTLRFKRDGLEGKIVGYKEVSLVEISNATAKNSLS  60

Query  132  LLRRPAGRADFVRGAAGFFPFAPGGLDGVEAIAEMESEAQAAERSKTGGKQSGLDRIINF  191
            L R+P  ++DFVRG++   PFAPGGLD  E + + E               SGL R+   
Sbjct  61   LNRKPGPKSDFVRGSSSNLPFAPGGLD-EEVLKDSEG------------VDSGLKRLHRD  107

Query  192  GAEGGLLEIAPGCSRGLQFEATKTKETAE  220
              EGGLL++ PG SRGL F   +  +  E
Sbjct  108  --EGGLLDVPPGFSRGLDFGEDEETDDDE  134


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 120 bits (302),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 40/161 (25%), Positives = 73/161 (45%), Gaps = 14/161 (9%)

Query  328  QKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALASKHM---TKAIYTSPIKALSNQKFR  384
            Q EA+  +  G  V V A T +GKT+        A   +    +A+  +P + L+ Q + 
Sbjct  4    QAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYE  63

Query  385  DFRTEFDDVGI----LTGDVQINPEAS------CLIMTTEILRSMLYRGADLIRDVEFVI  434
            + +     +G+    L G      +         L+ T   L  +L     L+++++ ++
Sbjct  64   ELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RKLLKNLKLLV  122

Query  435  FDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYE  475
             DE H + D+  G   EE++  LP+   ++LLSAT+P   E
Sbjct  123  LDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLE  163


>CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain.  Mtr4 
is the essential RNA helicase, and is an exosome-activating 
cofactor. This arch domain is carried in Mtr4 and Ski2 (the 
cytosolic homolog of Mtr4). The arch domain is required for 
proper 5.8S rRNA processing, and appears to function independently 
of canonical helicase activity.
Length=267

 Score = 106 bits (266),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 51/177 (29%), Positives = 78/177 (44%), Gaps = 13/177 (7%)

Query  825  EEMIKRSFSENATQALLPEHEKQVQLSEASLAKIKREPCDICDIDLVACHDAAIEYEKLT  884
            E M+KRSFS+   QA LPE EK+++  E  LA IK       + D+   +D   + EKL 
Sbjct  1    EYMLKRSFSQFQNQASLPELEKKLKELEKELASIKIP----DEEDIKEYYDLRQQLEKLN  56

Query  885  SELHVGLLASPVGKRLFMPKRLVVYRKDGFR--TAGIIVREG--VGGGATPNIQVLEIGK  940
             ++   +L  P G     P RLVV + +G +    G++V        G     Q   I  
Sbjct  57   EDIREVILHPPYGLPFLQPGRLVVVKDNGDQDFGWGVVVNFKKRKKNGKAEPPQESYIVD  116

Query  941  ----LSHRRHPSDILPFLPRFRHLLHPLPTRAADMTLKVCKIPLSDLECVTNTIVKV  993
                L+    P D+  F         P P        +V  +PLSD+E +++  +K+
Sbjct  117  VLLVLALVSSPEDLDKFNDVNPEGFRPAPPGEKGEM-EVVPVPLSDIEAISSVRLKL  172



Lambda      K        H        a         alpha
   0.318    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1289863036


Query= TCONS_00011835

Length=1048


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1347913952


Query= TCONS_00011836

Length=1293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462374 pfam08148, DSHCT, DSHCT (NUC185) domain. This C termin...  212     3e-64
CDD:465562 pfam17911, Ski2_N, Ski2 N-terminal region. This region...  150     1e-42
CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain...  148     3e-40
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  119     2e-31


>CDD:462374 pfam08148, DSHCT, DSHCT (NUC185) domain.  This C terminal domain 
is found in DOB1/SK12/helY-like DEAD box helicases.
Length=154

 Score = 212 bits (543),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 100/170 (59%), Gaps = 17/170 (10%)

Query  1117  RVQLKGKVACEIHSADELVLTELILENVLAEYEPEEIVALLSAFVFQEKTENVPTLTPRL  1176
              V LKG+VACEI S +EL+LTEL+   V  + +PEE+ ALLSAFVF+EK       +P L
Sbjct  2     VVTLKGRVACEIRSENELLLTELLFSGVFDDLDPEELAALLSAFVFEEKRREPYLPSPEL  61

Query  1177  EKGKEAIIRIAEKVNDLQIQYQVIQSSEDSNDFASQPRFGLAEVVYEWAKGMSFNRITDL  1236
              +    +  IA ++                   +    FGL EVVY WA+G SF  I  L
Sbjct  62    AEALRLLEEIAHRI-----------------AVSRFLDFGLMEVVYAWARGASFAEICKL  104

Query  1237  TDVMEGTIVRTITRLDETCREVRNAAKLVGDPTLYAKMQHAQELIKRDVI  1286
             TD+ EG IVR I RLDE  R++ NAAK++GDP L  K + A ELIKRD++
Sbjct  105   TDLDEGDIVRLIRRLDELLRQIANAAKIIGDPELREKAEEAIELIKRDIV  154


>CDD:465562 pfam17911, Ski2_N, Ski2 N-terminal region.  This region is the 
N-terminal extended region found in the Ski2 protein. The 
Ski complex is a conserved multiprotein assembly required for 
the cytoplasmic functions of the exosome, including RNA turnover, 
surveillance, and interference. Ski2, Ski3, and Ski8 
assemble in a tetramer with 1:1:2 stoichiometry.
Length=134

 Score = 150 bits (380),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 62/149 (42%), Positives = 86/149 (58%), Gaps = 16/149 (11%)

Query  73   NRLQKRWDVPVNYTDLYEIAPTQTRTIVRFTREGLEGRVTGYHEV-TVPAAAANAKNSTS  131
            ++ Q+ WD   +Y  L +I P+ +RT +RF R+GLEG++ GY EV  V  + A AKNS S
Sbjct  1    DKAQRHWDRDKDYKSLLKIPPSPSRTTLRFKRDGLEGKIVGYKEVSLVEISNATAKNSLS  60

Query  132  LLRRPAGRADFVRGAAGFFPFAPGGLDGVEAIAEMESEAQAAERSKTGGKQSGLDRIINF  191
            L R+P  ++DFVRG++   PFAPGGLD  E + + E               SGL R+   
Sbjct  61   LNRKPGPKSDFVRGSSSNLPFAPGGLD-EEVLKDSEG------------VDSGLKRLHRD  107

Query  192  GAEGGLLEIAPGCSRGLQFEATKTKETAE  220
              EGGLL++ PG SRGL F   +  +  E
Sbjct  108  --EGGLLDVPPGFSRGLDFGEDEETDDDE  134


>CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain.  Mtr4 
is the essential RNA helicase, and is an exosome-activating 
cofactor. This arch domain is carried in Mtr4 and Ski2 (the 
cytosolic homolog of Mtr4). The arch domain is required for 
proper 5.8S rRNA processing, and appears to function independently 
of canonical helicase activity.
Length=267

 Score = 148 bits (375),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 70/276 (25%), Positives = 124/276 (45%), Gaps = 19/276 (7%)

Query  825   EEMIKRSFSENATQALLPEHEKQVQLSEASLAKIKREPCDICDIDLVACHDAAIEYEKLT  884
             E M+KRSFS+   QA LPE EK+++  E  LA IK       + D+   +D   + EKL 
Sbjct  1     EYMLKRSFSQFQNQASLPELEKKLKELEKELASIKIP----DEEDIKEYYDLRQQLEKLN  56

Query  885   SELHVGLLASPVGKRLFMPKRLVVYRKDGFR--TAGIIVREG--VGGGATPNIQVLEIGK  940
              ++   +L  P G     P RLVV + +G +    G++V        G     Q   I  
Sbjct  57    EDIREVILHPPYGLPFLQPGRLVVVKDNGDQDFGWGVVVNFKKRKKNGKAEPPQESYIVD  116

Query  941   ----LSHRRHPSDILPFLPRFRHLLHPLPTRAADMTLKVCKIPLSDLECVTNTIVKVGGP  996
                 L+    P D+  F         P P        +V  +PLSD+E +++  +K+   
Sbjct  117   VLLVLALVSSPEDLDKFNDVNPEGFRPAPPGEKGEM-EVVPVPLSDIEAISSVRLKLPKD  175

Query  997   TWYLNIKKEAIKFADKELSKLCASWTSPI--WDEMDWARIKELQVRDILEKRQAQAAITQ  1054
                    +EA+  A +EL +        +   ++M    IK+ + +++L K +   +  +
Sbjct  176   LRPAE-AREAVLKALQELKRRFPDGIPLLDPIEDMK---IKDDEFKELLRKIEVLESRLE  231

Query  1055  SCRCLQCPSFMKHFEMQHDEWQVKENISQLKQLMSD  1090
             S    + P   + + + H++ +++E I +LK+ +SD
Sbjct  232   SHPLHKSPRLEELYALYHEKVELQEEIKELKKEISD  267


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 119 bits (301),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 40/161 (25%), Positives = 73/161 (45%), Gaps = 14/161 (9%)

Query  328  QKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALASKHM---TKAIYTSPIKALSNQKFR  384
            Q EA+  +  G  V V A T +GKT+        A   +    +A+  +P + L+ Q + 
Sbjct  4    QAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYE  63

Query  385  DFRTEFDDVGI----LTGDVQINPEAS------CLIMTTEILRSMLYRGADLIRDVEFVI  434
            + +     +G+    L G      +         L+ T   L  +L     L+++++ ++
Sbjct  64   ELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RKLLKNLKLLV  122

Query  435  FDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYE  475
             DE H + D+  G   EE++  LP+   ++LLSAT+P   E
Sbjct  123  LDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLE  163



Lambda      K        H        a         alpha
   0.318    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1645037000


Query= TCONS_00017929

Length=895


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1148411200


Query= TCONS_00017930

Length=1154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465562 pfam17911, Ski2_N, Ski2 N-terminal region. This region...  150     1e-42
CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain...  149     1e-40
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  120     9e-32


>CDD:465562 pfam17911, Ski2_N, Ski2 N-terminal region.  This region is the 
N-terminal extended region found in the Ski2 protein. The 
Ski complex is a conserved multiprotein assembly required for 
the cytoplasmic functions of the exosome, including RNA turnover, 
surveillance, and interference. Ski2, Ski3, and Ski8 
assemble in a tetramer with 1:1:2 stoichiometry.
Length=134

 Score = 150 bits (380),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 62/149 (42%), Positives = 86/149 (58%), Gaps = 16/149 (11%)

Query  73   NRLQKRWDVPVNYTDLYEIAPTQTRTIVRFTREGLEGRVTGYHEV-TVPAAAANAKNSTS  131
            ++ Q+ WD   +Y  L +I P+ +RT +RF R+GLEG++ GY EV  V  + A AKNS S
Sbjct  1    DKAQRHWDRDKDYKSLLKIPPSPSRTTLRFKRDGLEGKIVGYKEVSLVEISNATAKNSLS  60

Query  132  LLRRPAGRADFVRGAAGFFPFAPGGLDGVEAIAEMESEAQAAERSKTGGKQSGLDRIINF  191
            L R+P  ++DFVRG++   PFAPGGLD  E + + E               SGL R+   
Sbjct  61   LNRKPGPKSDFVRGSSSNLPFAPGGLD-EEVLKDSEG------------VDSGLKRLHRD  107

Query  192  GAEGGLLEIAPGCSRGLQFEATKTKETAE  220
              EGGLL++ PG SRGL F   +  +  E
Sbjct  108  --EGGLLDVPPGFSRGLDFGEDEETDDDE  134


>CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain.  Mtr4 
is the essential RNA helicase, and is an exosome-activating 
cofactor. This arch domain is carried in Mtr4 and Ski2 (the 
cytosolic homolog of Mtr4). The arch domain is required for 
proper 5.8S rRNA processing, and appears to function independently 
of canonical helicase activity.
Length=267

 Score = 149 bits (378),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 70/276 (25%), Positives = 124/276 (45%), Gaps = 19/276 (7%)

Query  825   EEMIKRSFSENATQALLPEHEKQVQLSEASLAKIKREPCDICDIDLVACHDAAIEYEKLT  884
             E M+KRSFS+   QA LPE EK+++  E  LA IK       + D+   +D   + EKL 
Sbjct  1     EYMLKRSFSQFQNQASLPELEKKLKELEKELASIKIP----DEEDIKEYYDLRQQLEKLN  56

Query  885   SELHVGLLASPVGKRLFMPKRLVVYRKDGFR--TAGIIVREG--VGGGATPNIQVLEIGK  940
              ++   +L  P G     P RLVV + +G +    G++V        G     Q   I  
Sbjct  57    EDIREVILHPPYGLPFLQPGRLVVVKDNGDQDFGWGVVVNFKKRKKNGKAEPPQESYIVD  116

Query  941   ----LSHRRHPSDILPFLPRFRHLLHPLPTRAADMTLKVCKIPLSDLECVTNTIVKVGGP  996
                 L+    P D+  F         P P        +V  +PLSD+E +++  +K+   
Sbjct  117   VLLVLALVSSPEDLDKFNDVNPEGFRPAPPGEKGEM-EVVPVPLSDIEAISSVRLKLPKD  175

Query  997   TWYLNIKKEAIKFADKELSKLCASWTSPI--WDEMDWARIKELQVRDILEKRQAQAAITQ  1054
                    +EA+  A +EL +        +   ++M    IK+ + +++L K +   +  +
Sbjct  176   LRPAE-AREAVLKALQELKRRFPDGIPLLDPIEDMK---IKDDEFKELLRKIEVLESRLE  231

Query  1055  SCRCLQCPSFMKHFEMQHDEWQVKENISQLKQLMSD  1090
             S    + P   + + + H++ +++E I +LK+ +SD
Sbjct  232   SHPLHKSPRLEELYALYHEKVELQEEIKELKKEISD  267


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 120 bits (303),  Expect = 9e-32, Method: Composition-based stats.
 Identities = 40/161 (25%), Positives = 73/161 (45%), Gaps = 14/161 (9%)

Query  328  QKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALASKHM---TKAIYTSPIKALSNQKFR  384
            Q EA+  +  G  V V A T +GKT+        A   +    +A+  +P + L+ Q + 
Sbjct  4    QAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQIYE  63

Query  385  DFRTEFDDVGI----LTGDVQINPEAS------CLIMTTEILRSMLYRGADLIRDVEFVI  434
            + +     +G+    L G      +         L+ T   L  +L     L+++++ ++
Sbjct  64   ELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RKLLKNLKLLV  122

Query  435  FDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYE  475
             DE H + D+  G   EE++  LP+   ++LLSAT+P   E
Sbjct  123  LDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLE  163



Lambda      K        H        a         alpha
   0.319    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1475823566


Query= TCONS_00011837

Length=1028


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1319596432


Query= TCONS_00017932

Length=1048


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1347913952


Query= TCONS_00017933

Length=1020


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1308269424


Query= TCONS_00011838

Length=786


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1006965184


Query= TCONS_00011839

Length=1028


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1319596432


Query= TCONS_00011840

Length=1007


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1289863036


Query= TCONS_00017934

Length=617


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784574700


Query= TCONS_00017935

Length=806


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1036068224


Query= TCONS_00017937

Length=1046


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1345082200


Query= TCONS_00017936

Length=1048


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1347913952


Query= TCONS_00011841

Length=895


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1148411200


Query= TCONS_00011844

Length=538


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0783    0.140     1.90     42.6     43.6 

Effective search space used: 676787502


Query= TCONS_00017939

Length=538


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 676787502


Query= TCONS_00011845

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00017940

Length=521


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 651048380


Query= TCONS_00011847

Length=1161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L...  328     2e-105
CDD:460695 pfam02787, CPSase_L_D3, Carbamoyl-phosphate synthetase...  124     2e-34 


>CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, 
ATP binding domain.  Carbamoyl-phosphate synthase catalyzes 
the ATP-dependent synthesis of carbamyl-phosphate from glutamine 
or ammonia and bicarbonate. This important enzyme initiates 
both the urea cycle and the biosynthesis of arginine and/or 
pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme 
in prokaryotes is a heterodimer of a small and large chain. 
The small chain promotes the hydrolysis of glutamine to 
ammonia, which is used by the large chain to synthesize carbamoyl 
phosphate. See pfam00988. The small chain has a GATase 
domain in the carboxyl terminus. See pfam00117. The ATP binding 
domain (this one) has an ATP-grasp fold.
Length=209

 Score = 328 bits (843),  Expect = 2e-105, Method: Composition-based stats.
 Identities = 113/211 (54%), Positives = 137/211 (65%), Gaps = 10/211 (5%)

Query  220  DRDLFAQALKEINIPIAESIA--VNTVDEALKAAESVGYPIIVRSAYALGGLGSGFAENP  277
            D+ LF  A+KE  +P     A  V T +EAL AA+ +GYP+I+++A+  GGLG G A N 
Sbjct  1    DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNE  60

Query  278  EELKNLASRSLTLA------PQILVEKSLKGWKEVEYEVVRDAANNCITVCNMENFDPLG  331
            EEL  L + +L  A      PQ+LVEKSLKG K +EY+V+RDA  NCITVCN E  D   
Sbjct  61   EELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQR-  119

Query  332  IHTGDSIVVAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNA  391
              T  SI VAPSQTL+DEE  MLR AA+KI RHLG VG   V++AL P   +Y  IE+N 
Sbjct  120  -RTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNT  178

Query  392  RLSRSSALASKATGYPLAYTAAKIGLGHTLP  422
            RL    ALA KATGY LA  AAKI LG+ LP
Sbjct  179  RLQVEHALAEKATGYDLAKEAAKIALGYPLP  209


 Score = 87.7 bits (218),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 45/216 (21%), Positives = 86/216 (40%), Gaps = 16/216 (7%)

Query  757  DRHKFSQILDSIGV----DQPAWKELTSVAEAERFAESVGYPVLVRPSYVLSGAAMSVIY  812
            D+  F   +   GV          E  +  EA   A+ +GYPV+++ ++   G  M +  
Sbjct  1    DKVLFKAAMKEAGVPTVPGTAGPVE--TEEEALAAAKEIGYPVIIKAAFGGGGLGMGIAR  58

Query  813  SGDELKEKLLNASAVSP----DHPVVITKFIEGAQEIDIDAVA-SNGKLLLHAVSEHVEP  867
            + +EL E    A A +P    +  V++ K ++G + I+   +  ++G  +     E  + 
Sbjct  59   NEEELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQ  118

Query  868  AGVHSGDATLVLPPASLDEKVMGRVKEIAEKVAKAWNITGPFNMQIIKADQEGAEPQLKV  927
                +  +  V P  +L ++    ++E A K+A+     G   ++       G   +   
Sbjct  119  --RRTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSG---EYYF  173

Query  928  IECNLRASRSFPFVSKVLGTNFIDVATKALVGRDVP  963
            IE N R         K  G +    A K  +G  +P
Sbjct  174  IEMNTRLQVEHALAEKATGYDLAKEAAKIALGYPLP  209


>CDD:460695 pfam02787, CPSase_L_D3, Carbamoyl-phosphate synthetase large 
chain, oligomerization domain.  Carbamoyl-phosphate synthase 
catalyzes the ATP-dependent synthesis of carbamyl-phosphate 
from glutamine or ammonia and bicarbonate. The carbamoyl-phosphate 
synthase (CPS) enzyme in prokaryotes is a heterodimer 
of a small and large chain.
Length=79

 Score = 124 bits (314),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 58/82 (71%), Gaps = 3/82 (4%)

Query  507  EALKNPTDRRWLAVGQAMLHENYSVDKVHELTKIDKWFLYKLQNIVDCNNELKEIGSLFG  566
            E L+ PTD R  A+ +A+    YSV+++HELTKID WFL K++NIV+   ELKE G    
Sbjct  1    EELRTPTDERLFAIAEAL-RRGYSVEEIHELTKIDPWFLDKIKNIVELEKELKEAGL--D  57

Query  567  IQKEMMLKAKKLGFSDKQIALL  588
            +  E++ +AK+LGFSD+QIA L
Sbjct  58   LDAELLREAKRLGFSDRQIAKL  79



Lambda      K        H        a         alpha
   0.317    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1485597232


Query= TCONS_00011846

Length=1175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L...  327     4e-105
CDD:460695 pfam02787, CPSase_L_D3, Carbamoyl-phosphate synthetase...  123     4e-34 


>CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, 
ATP binding domain.  Carbamoyl-phosphate synthase catalyzes 
the ATP-dependent synthesis of carbamyl-phosphate from glutamine 
or ammonia and bicarbonate. This important enzyme initiates 
both the urea cycle and the biosynthesis of arginine and/or 
pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme 
in prokaryotes is a heterodimer of a small and large chain. 
The small chain promotes the hydrolysis of glutamine to 
ammonia, which is used by the large chain to synthesize carbamoyl 
phosphate. See pfam00988. The small chain has a GATase 
domain in the carboxyl terminus. See pfam00117. The ATP binding 
domain (this one) has an ATP-grasp fold.
Length=209

 Score = 327 bits (841),  Expect = 4e-105, Method: Composition-based stats.
 Identities = 113/211 (54%), Positives = 137/211 (65%), Gaps = 10/211 (5%)

Query  220  DRDLFAQALKEINIPIAESIA--VNTVDEALKAAESVGYPIIVRSAYALGGLGSGFAENP  277
            D+ LF  A+KE  +P     A  V T +EAL AA+ +GYP+I+++A+  GGLG G A N 
Sbjct  1    DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNE  60

Query  278  EELKNLASRSLTLA------PQILVEKSLKGWKEVEYEVVRDAANNCITVCNMENFDPLG  331
            EEL  L + +L  A      PQ+LVEKSLKG K +EY+V+RDA  NCITVCN E  D   
Sbjct  61   EELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQR-  119

Query  332  IHTGDSIVVAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNA  391
              T  SI VAPSQTL+DEE  MLR AA+KI RHLG VG   V++AL P   +Y  IE+N 
Sbjct  120  -RTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNT  178

Query  392  RLSRSSALASKATGYPLAYTAAKIGLGHTLP  422
            RL    ALA KATGY LA  AAKI LG+ LP
Sbjct  179  RLQVEHALAEKATGYDLAKEAAKIALGYPLP  209


 Score = 87.4 bits (217),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 45/216 (21%), Positives = 86/216 (40%), Gaps = 16/216 (7%)

Query  757  DRHKFSQILDSIGV----DQPAWKELTSVAEAERFAESVGYPVLVRPSYVLSGAAMSVIY  812
            D+  F   +   GV          E  +  EA   A+ +GYPV+++ ++   G  M +  
Sbjct  1    DKVLFKAAMKEAGVPTVPGTAGPVE--TEEEALAAAKEIGYPVIIKAAFGGGGLGMGIAR  58

Query  813  SGDELKEKLLNASAVSP----DHPVVITKFIEGAQEIDIDAVA-SNGKLLLHAVSEHVEP  867
            + +EL E    A A +P    +  V++ K ++G + I+   +  ++G  +     E  + 
Sbjct  59   NEEELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQ  118

Query  868  AGVHSGDATLVLPPASLDEKVMGRVKEIAEKVAKAWNITGPFNMQIIKADQEGAEPQLKV  927
                +  +  V P  +L ++    ++E A K+A+     G   ++       G   +   
Sbjct  119  --RRTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSG---EYYF  173

Query  928  IECNLRASRSFPFVSKVLGTNFIDVATKALVGRDVP  963
            IE N R         K  G +    A K  +G  +P
Sbjct  174  IEMNTRLQVEHALAEKATGYDLAKEAAKIALGYPLP  209


>CDD:460695 pfam02787, CPSase_L_D3, Carbamoyl-phosphate synthetase large 
chain, oligomerization domain.  Carbamoyl-phosphate synthase 
catalyzes the ATP-dependent synthesis of carbamyl-phosphate 
from glutamine or ammonia and bicarbonate. The carbamoyl-phosphate 
synthase (CPS) enzyme in prokaryotes is a heterodimer 
of a small and large chain.
Length=79

 Score = 123 bits (312),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 58/82 (71%), Gaps = 3/82 (4%)

Query  507  EALKNPTDRRWLAVGQAMLHENYSVDKVHELTKIDKWFLYKLQNIVDCNNELKEIGSLFG  566
            E L+ PTD R  A+ +A+    YSV+++HELTKID WFL K++NIV+   ELKE G    
Sbjct  1    EELRTPTDERLFAIAEAL-RRGYSVEEIHELTKIDPWFLDKIKNIVELEKELKEAGL--D  57

Query  567  IQKEMMLKAKKLGFSDKQIALL  588
            +  E++ +AK+LGFSD+QIA L
Sbjct  58   LDAELLREAKRLGFSDRQIAKL  79



Lambda      K        H        a         alpha
   0.317    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1505144564


Query= TCONS_00011848

Length=968
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L...  328     7e-107
CDD:460695 pfam02787, CPSase_L_D3, Carbamoyl-phosphate synthetase...  123     4e-34 


>CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, 
ATP binding domain.  Carbamoyl-phosphate synthase catalyzes 
the ATP-dependent synthesis of carbamyl-phosphate from glutamine 
or ammonia and bicarbonate. This important enzyme initiates 
both the urea cycle and the biosynthesis of arginine and/or 
pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme 
in prokaryotes is a heterodimer of a small and large chain. 
The small chain promotes the hydrolysis of glutamine to 
ammonia, which is used by the large chain to synthesize carbamoyl 
phosphate. See pfam00988. The small chain has a GATase 
domain in the carboxyl terminus. See pfam00117. The ATP binding 
domain (this one) has an ATP-grasp fold.
Length=209

 Score = 328 bits (843),  Expect = 7e-107, Method: Composition-based stats.
 Identities = 113/211 (54%), Positives = 137/211 (65%), Gaps = 10/211 (5%)

Query  27   DRDLFAQALKEINIPIAESIA--VNTVDEALKAAESVGYPIIVRSAYALGGLGSGFAENP  84
            D+ LF  A+KE  +P     A  V T +EAL AA+ +GYP+I+++A+  GGLG G A N 
Sbjct  1    DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNE  60

Query  85   EELKNLASRSLTLA------PQILVEKSLKGWKEVEYEVVRDAANNCITVCNMENFDPLG  138
            EEL  L + +L  A      PQ+LVEKSLKG K +EY+V+RDA  NCITVCN E  D   
Sbjct  61   EELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQR-  119

Query  139  IHTGDSIVVAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNA  198
              T  SI VAPSQTL+DEE  MLR AA+KI RHLG VG   V++AL P   +Y  IE+N 
Sbjct  120  -RTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNT  178

Query  199  RLSRSSALASKATGYPLAYTAAKIGLGHTLP  229
            RL    ALA KATGY LA  AAKI LG+ LP
Sbjct  179  RLQVEHALAEKATGYDLAKEAAKIALGYPLP  209


 Score = 87.7 bits (218),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 45/216 (21%), Positives = 86/216 (40%), Gaps = 16/216 (7%)

Query  564  DRHKFSQILDSIGV----DQPAWKELTSVAEAERFAESVGYPVLVRPSYVLSGAAMSVIY  619
            D+  F   +   GV          E  +  EA   A+ +GYPV+++ ++   G  M +  
Sbjct  1    DKVLFKAAMKEAGVPTVPGTAGPVE--TEEEALAAAKEIGYPVIIKAAFGGGGLGMGIAR  58

Query  620  SGDELKEKLLNASAVSP----DHPVVITKFIEGAQEIDIDAVA-SNGKLLLHAVSEHVEP  674
            + +EL E    A A +P    +  V++ K ++G + I+   +  ++G  +     E  + 
Sbjct  59   NEEELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQ  118

Query  675  AGVHSGDATLVLPPASLDEKVMGRVKEIAEKVAKAWNITGPFNMQIIKADQEGAEPQLKV  734
                +  +  V P  +L ++    ++E A K+A+     G   ++       G   +   
Sbjct  119  --RRTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSG---EYYF  173

Query  735  IECNLRASRSFPFVSKVLGTNFIDVATKALVGRDVP  770
            IE N R         K  G +    A K  +G  +P
Sbjct  174  IEMNTRLQVEHALAEKATGYDLAKEAAKIALGYPLP  209


>CDD:460695 pfam02787, CPSase_L_D3, Carbamoyl-phosphate synthetase large 
chain, oligomerization domain.  Carbamoyl-phosphate synthase 
catalyzes the ATP-dependent synthesis of carbamyl-phosphate 
from glutamine or ammonia and bicarbonate. The carbamoyl-phosphate 
synthase (CPS) enzyme in prokaryotes is a heterodimer 
of a small and large chain.
Length=79

 Score = 123 bits (312),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 58/82 (71%), Gaps = 3/82 (4%)

Query  314  EALKNPTDRRWLAVGQAMLHENYSVDKVHELTKIDKWFLYKLQNIVDCNNELKEIGSLFG  373
            E L+ PTD R  A+ +A+    YSV+++HELTKID WFL K++NIV+   ELKE G    
Sbjct  1    EELRTPTDERLFAIAEAL-RRGYSVEEIHELTKIDPWFLDKIKNIVELEKELKEAGL--D  57

Query  374  IQKEMMLKAKKLGFSDKQIALL  395
            +  E++ +AK+LGFSD+QIA L
Sbjct  58   LDAELLREAKRLGFSDRQIAKL  79



Lambda      K        H        a         alpha
   0.317    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1234643872


Query= TCONS_00011849

Length=1161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L...  328     2e-105
CDD:460695 pfam02787, CPSase_L_D3, Carbamoyl-phosphate synthetase...  124     2e-34 


>CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, 
ATP binding domain.  Carbamoyl-phosphate synthase catalyzes 
the ATP-dependent synthesis of carbamyl-phosphate from glutamine 
or ammonia and bicarbonate. This important enzyme initiates 
both the urea cycle and the biosynthesis of arginine and/or 
pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme 
in prokaryotes is a heterodimer of a small and large chain. 
The small chain promotes the hydrolysis of glutamine to 
ammonia, which is used by the large chain to synthesize carbamoyl 
phosphate. See pfam00988. The small chain has a GATase 
domain in the carboxyl terminus. See pfam00117. The ATP binding 
domain (this one) has an ATP-grasp fold.
Length=209

 Score = 328 bits (843),  Expect = 2e-105, Method: Composition-based stats.
 Identities = 113/211 (54%), Positives = 137/211 (65%), Gaps = 10/211 (5%)

Query  220  DRDLFAQALKEINIPIAESIA--VNTVDEALKAAESVGYPIIVRSAYALGGLGSGFAENP  277
            D+ LF  A+KE  +P     A  V T +EAL AA+ +GYP+I+++A+  GGLG G A N 
Sbjct  1    DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNE  60

Query  278  EELKNLASRSLTLA------PQILVEKSLKGWKEVEYEVVRDAANNCITVCNMENFDPLG  331
            EEL  L + +L  A      PQ+LVEKSLKG K +EY+V+RDA  NCITVCN E  D   
Sbjct  61   EELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQR-  119

Query  332  IHTGDSIVVAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNA  391
              T  SI VAPSQTL+DEE  MLR AA+KI RHLG VG   V++AL P   +Y  IE+N 
Sbjct  120  -RTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNT  178

Query  392  RLSRSSALASKATGYPLAYTAAKIGLGHTLP  422
            RL    ALA KATGY LA  AAKI LG+ LP
Sbjct  179  RLQVEHALAEKATGYDLAKEAAKIALGYPLP  209


 Score = 87.7 bits (218),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 45/216 (21%), Positives = 86/216 (40%), Gaps = 16/216 (7%)

Query  757  DRHKFSQILDSIGV----DQPAWKELTSVAEAERFAESVGYPVLVRPSYVLSGAAMSVIY  812
            D+  F   +   GV          E  +  EA   A+ +GYPV+++ ++   G  M +  
Sbjct  1    DKVLFKAAMKEAGVPTVPGTAGPVE--TEEEALAAAKEIGYPVIIKAAFGGGGLGMGIAR  58

Query  813  SGDELKEKLLNASAVSP----DHPVVITKFIEGAQEIDIDAVA-SNGKLLLHAVSEHVEP  867
            + +EL E    A A +P    +  V++ K ++G + I+   +  ++G  +     E  + 
Sbjct  59   NEEELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQ  118

Query  868  AGVHSGDATLVLPPASLDEKVMGRVKEIAEKVAKAWNITGPFNMQIIKADQEGAEPQLKV  927
                +  +  V P  +L ++    ++E A K+A+     G   ++       G   +   
Sbjct  119  --RRTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSG---EYYF  173

Query  928  IECNLRASRSFPFVSKVLGTNFIDVATKALVGRDVP  963
            IE N R         K  G +    A K  +G  +P
Sbjct  174  IEMNTRLQVEHALAEKATGYDLAKEAAKIALGYPLP  209


>CDD:460695 pfam02787, CPSase_L_D3, Carbamoyl-phosphate synthetase large 
chain, oligomerization domain.  Carbamoyl-phosphate synthase 
catalyzes the ATP-dependent synthesis of carbamyl-phosphate 
from glutamine or ammonia and bicarbonate. The carbamoyl-phosphate 
synthase (CPS) enzyme in prokaryotes is a heterodimer 
of a small and large chain.
Length=79

 Score = 124 bits (314),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 58/82 (71%), Gaps = 3/82 (4%)

Query  507  EALKNPTDRRWLAVGQAMLHENYSVDKVHELTKIDKWFLYKLQNIVDCNNELKEIGSLFG  566
            E L+ PTD R  A+ +A+    YSV+++HELTKID WFL K++NIV+   ELKE G    
Sbjct  1    EELRTPTDERLFAIAEAL-RRGYSVEEIHELTKIDPWFLDKIKNIVELEKELKEAGL--D  57

Query  567  IQKEMMLKAKKLGFSDKQIALL  588
            +  E++ +AK+LGFSD+QIA L
Sbjct  58   LDAELLREAKRLGFSDRQIAKL  79



Lambda      K        H        a         alpha
   0.317    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1485597232


Query= TCONS_00011851

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00011852

Length=337


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.119    0.315    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00011853

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.121    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00011855

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00011854

Length=337


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.119    0.315    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00011856

Length=337


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.119    0.315    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00011857

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.119    0.305    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00011858

Length=337


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.119    0.315    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00011860

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396007 pfam01256, Carb_kinase, Carbohydrate kinase. This fami...  169     3e-51


>CDD:396007 pfam01256, Carb_kinase, Carbohydrate kinase.  This family is 
related to pfam02110 and pfam00294 implying that it also is 
a carbohydrate kinase. (personal obs Yeats C).
Length=242

 Score = 169 bits (429),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 88/275 (32%), Positives = 117/275 (43%), Gaps = 42/275 (15%)

Query  36   VAVIGGSLDYTGAPYFSSMASARLGCDMSHVICEKSAATVIKSYSPNLMVHPLLPSTDSV  95
            V VIGGS DYTGAP  +++A+ R G  +  V  +  A  V+KS  P +MVHPL       
Sbjct  1    VLVIGGSKDYTGAPLLAALAALRSGAGLVSVATDSEAIAVLKSPLPEVMVHPLPE-----  55

Query  96   SNPGSIDARALASPIVSMLSRLHALVIGPGLGRDGVTLKVVTEVMKEARSRSIPFVLDAD  155
                        S I+  LSR  A+VIGPGLGRD      + EV     ++  P V+DAD
Sbjct  56   -----------TSSILEKLSRYDAVVIGPGLGRDEKGKAALEEV----LAKDCPLVIDAD  100

Query  156  GLLLVTEDPNLVKGYKDCILTPNVNEFSRLAKALGIEVPSQAQIAAQTDESDKTSKESQA  215
             L L+  +          +LTP+  EF RL    GI                      +A
Sbjct  101  ALNLLAINNEKPAREGPTVLTPHPGEFERLCGLAGI----------------LGDDRLEA  144

Query  216  CEQLSQALGGVTIIQKGPHDVI-SNGVTTLISDLKGGLKRSGGQGDTLTGSLGTLLAW-R  273
              +L+Q L G TI+ KG   VI + G    I+         GG GD L G +G LLA   
Sbjct  145  ARELAQKLNG-TILLKGNVTVIAAPGGEVWINSTGNSALAKGGSGDVLAGLIGGLLAQNE  203

Query  274  AAYH---NKSWDSGEQENPKEAQSKQDVLAELESE  305
              Y      +W  G   +         +L  L S+
Sbjct  204  DPYDAAIAAAWLHGAASDLAAENHGVYMLPTLLSK  238



Lambda      K        H        a         alpha
   0.313    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00011859

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396007 pfam01256, Carb_kinase, Carbohydrate kinase. This fami...  110     1e-29


>CDD:396007 pfam01256, Carb_kinase, Carbohydrate kinase.  This family is 
related to pfam02110 and pfam00294 implying that it also is 
a carbohydrate kinase. (personal obs Yeats C).
Length=242

 Score = 110 bits (277),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 83/204 (41%), Gaps = 26/204 (13%)

Query  24   ASPIVSMLSRLHALVIGPGLGRDGVTLKVVTEVMKEARSRSIPFVLDADGLLLVTEDPNL  83
             S I+  LSR  A+VIGPGLGRD      + EV     ++  P V+DAD L L+  +   
Sbjct  56   TSSILEKLSRYDAVVIGPGLGRDEKGKAALEEV----LAKDCPLVIDADALNLLAINNEK  111

Query  84   VKGYKDCILTPNVNEFSRLAKALGIEVPSQAQIAAQTDESDKTSKESQACEQLSQALGGV  143
                   +LTP+  EF RL    GI                      +A  +L+Q L G 
Sbjct  112  PAREGPTVLTPHPGEFERLCGLAGI----------------LGDDRLEAARELAQKLNG-  154

Query  144  TIIQKGPHDVI-SNGVTTLISDLKGGLKRSGGQGDTLTGSLGTLLAW-RAAYH---NKSW  198
            TI+ KG   VI + G    I+         GG GD L G +G LLA     Y      +W
Sbjct  155  TILLKGNVTVIAAPGGEVWINSTGNSALAKGGSGDVLAGLIGGLLAQNEDPYDAAIAAAW  214

Query  199  DSGEQENPKEAQSKQDVLAELESE  222
              G   +         +L  L S+
Sbjct  215  LHGAASDLAAENHGVYMLPTLLSK  238



Lambda      K        H        a         alpha
   0.312    0.129    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00011861

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396007 pfam01256, Carb_kinase, Carbohydrate kinase. This fami...  110     1e-29


>CDD:396007 pfam01256, Carb_kinase, Carbohydrate kinase.  This family is 
related to pfam02110 and pfam00294 implying that it also is 
a carbohydrate kinase. (personal obs Yeats C).
Length=242

 Score = 110 bits (277),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 83/204 (41%), Gaps = 26/204 (13%)

Query  24   ASPIVSMLSRLHALVIGPGLGRDGVTLKVVTEVMKEARSRSIPFVLDADGLLLVTEDPNL  83
             S I+  LSR  A+VIGPGLGRD      + EV     ++  P V+DAD L L+  +   
Sbjct  56   TSSILEKLSRYDAVVIGPGLGRDEKGKAALEEV----LAKDCPLVIDADALNLLAINNEK  111

Query  84   VKGYKDCILTPNVNEFSRLAKALGIEVPSQAQIAAQTDESDKTSKESQACEQLSQALGGV  143
                   +LTP+  EF RL    GI                      +A  +L+Q L G 
Sbjct  112  PAREGPTVLTPHPGEFERLCGLAGI----------------LGDDRLEAARELAQKLNG-  154

Query  144  TIIQKGPHDVI-SNGVTTLISDLKGGLKRSGGQGDTLTGSLGTLLAW-RAAYH---NKSW  198
            TI+ KG   VI + G    I+         GG GD L G +G LLA     Y      +W
Sbjct  155  TILLKGNVTVIAAPGGEVWINSTGNSALAKGGSGDVLAGLIGGLLAQNEDPYDAAIAAAW  214

Query  199  DSGEQENPKEAQSKQDVLAELESE  222
              G   +         +L  L S+
Sbjct  215  LHGAASDLAAENHGVYMLPTLLSK  238



Lambda      K        H        a         alpha
   0.312    0.129    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00011862

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396007 pfam01256, Carb_kinase, Carbohydrate kinase. This fami...  160     5e-48


>CDD:396007 pfam01256, Carb_kinase, Carbohydrate kinase.  This family is 
related to pfam02110 and pfam00294 implying that it also is 
a carbohydrate kinase. (personal obs Yeats C).
Length=242

 Score = 160 bits (408),  Expect = 5e-48, Method: Composition-based stats.
 Identities = 88/275 (32%), Positives = 116/275 (42%), Gaps = 42/275 (15%)

Query  36   VAVIGGSLDYTGAPYFSSMASARLGMSSNHVICEKSAATVIKSYSPNLMVHPLLPSTDSV  95
            V VIGGS DYTGAP  +++A+ R G     V  +  A  V+KS  P +MVHPL       
Sbjct  1    VLVIGGSKDYTGAPLLAALAALRSGAGLVSVATDSEAIAVLKSPLPEVMVHPLPE-----  55

Query  96   SNPGSIDARALASPIVSMLSRLHALVIGPGLGRDGVTLKVVTEVMKEARSRSIPFVLDAD  155
                        S I+  LSR  A+VIGPGLGRD      + EV     ++  P V+DAD
Sbjct  56   -----------TSSILEKLSRYDAVVIGPGLGRDEKGKAALEEV----LAKDCPLVIDAD  100

Query  156  GLLLVTEDPNLVKGYKDCILTPNVNEFSRLAKALGIEVPSQAQIAAQTDESDKTSKESQA  215
             L L+  +          +LTP+  EF RL    GI                      +A
Sbjct  101  ALNLLAINNEKPAREGPTVLTPHPGEFERLCGLAGI----------------LGDDRLEA  144

Query  216  CEQLSQALGGVTIIQKGPHDVI-SNGVTTLISDLKGGLKRSGGQGDTLTGSLGTLLAW-R  273
              +L+Q L G TI+ KG   VI + G    I+         GG GD L G +G LLA   
Sbjct  145  ARELAQKLNG-TILLKGNVTVIAAPGGEVWINSTGNSALAKGGSGDVLAGLIGGLLAQNE  203

Query  274  AAYH---NKSWDSGEQENPKEAQSKQDVLAELESE  305
              Y      +W  G   +         +L  L S+
Sbjct  204  DPYDAAIAAAWLHGAASDLAAENHGVYMLPTLLSK  238



Lambda      K        H        a         alpha
   0.313    0.129    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00011863

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00017942

Length=1211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  172     3e-50
CDD:462729 pfam09262, PEX-1N, Peroxisome biogenesis factor 1, N-t...  118     3e-32


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 172 bits (437),  Expect = 3e-50, Method: Composition-based stats.
 Identities = 67/131 (51%), Positives = 88/131 (67%), Gaps = 3/131 (2%)

Query  875   LLLYGFPGCGKTLLASAIAGECGLNFISVKGPEILNKYIGASEKSVRDLFERAQAARPCI  934
             LLLYG PG GKT LA A+A E G  FI + G E+++KY+G SEK +R+LFE A+   PC+
Sbjct  1     LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  935   LFFDEFDSIAPKRGHDSTGVTDRVVNQLLTQMDGAEGL-SGVYVLAATSRPDLIDPALLR  993
             +F DE D++A  RG      + RVVNQLLT++DG     S V V+AAT+RPD +DPALL 
Sbjct  61    IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPALL-  119

Query  994   PGRLDKSLLCD  1004
              GR D+ +   
Sbjct  120   -GRFDRIIEFP  129


>CDD:462729 pfam09262, PEX-1N, Peroxisome biogenesis factor 1, N-terminal. 
 Members of this family adopt a double psi beta-barrel fold, 
similar in structure to the Cdc48 N-terminal domain. It has 
been suggested that this domain may be involved in interactions 
with ubiquitin, ubiquitin-like protein modifiers, or 
ubiquitin-like domains, such as Ubx. Furthermore, the domain 
may possess a putative adaptor or substrate binding site, allowing 
for peroxisomal biogenesis, membrane fusion and protein 
translocation.
Length=77

 Score = 118 bits (298),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 42/90 (47%), Positives = 56/90 (62%), Gaps = 13/90 (14%)

Query  129  HTINIEPLTPEDWEIIELHANFLELNLLSQIRALPNPTYSSAQSEHIHPLALHLSPTSTA  188
             T+ +EPLT +DWEI+ELHA FLE NLLSQ+R +               L + +S T+ A
Sbjct  1    TTVEVEPLTSDDWEILELHAEFLEDNLLSQVRVVSPG----------QILPVWVSGTTVA  50

Query  189  NIIITSLIPAPSNTSPFAKIAPDAEVIVAP  218
               +TS+ PA    SPFA+++PD EVIVAP
Sbjct  51   RFRVTSIEPA---NSPFARLSPDTEVIVAP  77



Lambda      K        H        a         alpha
   0.315    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1555409132


Query= TCONS_00017943

Length=1211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  172     3e-50
CDD:462729 pfam09262, PEX-1N, Peroxisome biogenesis factor 1, N-t...  118     3e-32


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 172 bits (437),  Expect = 3e-50, Method: Composition-based stats.
 Identities = 67/131 (51%), Positives = 88/131 (67%), Gaps = 3/131 (2%)

Query  875   LLLYGFPGCGKTLLASAIAGECGLNFISVKGPEILNKYIGASEKSVRDLFERAQAARPCI  934
             LLLYG PG GKT LA A+A E G  FI + G E+++KY+G SEK +R+LFE A+   PC+
Sbjct  1     LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  935   LFFDEFDSIAPKRGHDSTGVTDRVVNQLLTQMDGAEGL-SGVYVLAATSRPDLIDPALLR  993
             +F DE D++A  RG      + RVVNQLLT++DG     S V V+AAT+RPD +DPALL 
Sbjct  61    IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPALL-  119

Query  994   PGRLDKSLLCD  1004
              GR D+ +   
Sbjct  120   -GRFDRIIEFP  129


>CDD:462729 pfam09262, PEX-1N, Peroxisome biogenesis factor 1, N-terminal. 
 Members of this family adopt a double psi beta-barrel fold, 
similar in structure to the Cdc48 N-terminal domain. It has 
been suggested that this domain may be involved in interactions 
with ubiquitin, ubiquitin-like protein modifiers, or 
ubiquitin-like domains, such as Ubx. Furthermore, the domain 
may possess a putative adaptor or substrate binding site, allowing 
for peroxisomal biogenesis, membrane fusion and protein 
translocation.
Length=77

 Score = 118 bits (298),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 42/90 (47%), Positives = 56/90 (62%), Gaps = 13/90 (14%)

Query  129  HTINIEPLTPEDWEIIELHANFLELNLLSQIRALPNPTYSSAQSEHIHPLALHLSPTSTA  188
             T+ +EPLT +DWEI+ELHA FLE NLLSQ+R +               L + +S T+ A
Sbjct  1    TTVEVEPLTSDDWEILELHAEFLEDNLLSQVRVVSPG----------QILPVWVSGTTVA  50

Query  189  NIIITSLIPAPSNTSPFAKIAPDAEVIVAP  218
               +TS+ PA    SPFA+++PD EVIVAP
Sbjct  51   RFRVTSIEPA---NSPFARLSPDTEVIVAP  77



Lambda      K        H        a         alpha
   0.315    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0728    0.140     1.90     42.6     43.6 

Effective search space used: 1555409132


Query= TCONS_00017945

Length=1211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  172     3e-50
CDD:462729 pfam09262, PEX-1N, Peroxisome biogenesis factor 1, N-t...  113     2e-30


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 172 bits (437),  Expect = 3e-50, Method: Composition-based stats.
 Identities = 67/131 (51%), Positives = 88/131 (67%), Gaps = 3/131 (2%)

Query  875   LLLYGFPGCGKTLLASAIAGECGLNFISVKGPEILNKYIGASEKSVRDLFERAQAARPCI  934
             LLLYG PG GKT LA A+A E G  FI + G E+++KY+G SEK +R+LFE A+   PC+
Sbjct  1     LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  935   LFFDEFDSIAPKRGHDSTGVTDRVVNQLLTQMDGAEGL-SGVYVLAATSRPDLIDPALLR  993
             +F DE D++A  RG      + RVVNQLLT++DG     S V V+AAT+RPD +DPALL 
Sbjct  61    IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPALL-  119

Query  994   PGRLDKSLLCD  1004
              GR D+ +   
Sbjct  120   -GRFDRIIEFP  129


>CDD:462729 pfam09262, PEX-1N, Peroxisome biogenesis factor 1, N-terminal. 
 Members of this family adopt a double psi beta-barrel fold, 
similar in structure to the Cdc48 N-terminal domain. It has 
been suggested that this domain may be involved in interactions 
with ubiquitin, ubiquitin-like protein modifiers, or 
ubiquitin-like domains, such as Ubx. Furthermore, the domain 
may possess a putative adaptor or substrate binding site, allowing 
for peroxisomal biogenesis, membrane fusion and protein 
translocation.
Length=77

 Score = 113 bits (285),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 41/90 (46%), Positives = 55/90 (61%), Gaps = 13/90 (14%)

Query  129  HTINIEPLTPEDWESIELHANFLELNLLSQIRALPNPTYSSAQSEHIHPLALHLSPTSTA  188
             T+ +EPLT +DWE +ELHA FLE NLLSQ+R +               L + +S T+ A
Sbjct  1    TTVEVEPLTSDDWEILELHAEFLEDNLLSQVRVVSPG----------QILPVWVSGTTVA  50

Query  189  NIIITSLIPAPSNTSPFAKIAPDAEVIVAP  218
               +TS+ PA    SPFA+++PD EVIVAP
Sbjct  51   RFRVTSIEPA---NSPFARLSPDTEVIVAP  77



Lambda      K        H        a         alpha
   0.315    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1555409132


Query= TCONS_00017944

Length=1211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  172     3e-50
CDD:462729 pfam09262, PEX-1N, Peroxisome biogenesis factor 1, N-t...  113     2e-30


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 172 bits (437),  Expect = 3e-50, Method: Composition-based stats.
 Identities = 67/131 (51%), Positives = 88/131 (67%), Gaps = 3/131 (2%)

Query  875   LLLYGFPGCGKTLLASAIAGECGLNFISVKGPEILNKYIGASEKSVRDLFERAQAARPCI  934
             LLLYG PG GKT LA A+A E G  FI + G E+++KY+G SEK +R+LFE A+   PC+
Sbjct  1     LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  935   LFFDEFDSIAPKRGHDSTGVTDRVVNQLLTQMDGAEGL-SGVYVLAATSRPDLIDPALLR  993
             +F DE D++A  RG      + RVVNQLLT++DG     S V V+AAT+RPD +DPALL 
Sbjct  61    IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPALL-  119

Query  994   PGRLDKSLLCD  1004
              GR D+ +   
Sbjct  120   -GRFDRIIEFP  129


>CDD:462729 pfam09262, PEX-1N, Peroxisome biogenesis factor 1, N-terminal. 
 Members of this family adopt a double psi beta-barrel fold, 
similar in structure to the Cdc48 N-terminal domain. It has 
been suggested that this domain may be involved in interactions 
with ubiquitin, ubiquitin-like protein modifiers, or 
ubiquitin-like domains, such as Ubx. Furthermore, the domain 
may possess a putative adaptor or substrate binding site, allowing 
for peroxisomal biogenesis, membrane fusion and protein 
translocation.
Length=77

 Score = 113 bits (285),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 41/90 (46%), Positives = 55/90 (61%), Gaps = 13/90 (14%)

Query  129  HTINIEPLTPEDWESIELHANFLELNLLSQIRALPNPTYSSAQSEHIHPLALHLSPTSTA  188
             T+ +EPLT +DWE +ELHA FLE NLLSQ+R +               L + +S T+ A
Sbjct  1    TTVEVEPLTSDDWEILELHAEFLEDNLLSQVRVVSPG----------QILPVWVSGTTVA  50

Query  189  NIIITSLIPAPSNTSPFAKIAPDAEVIVAP  218
               +TS+ PA    SPFA+++PD EVIVAP
Sbjct  51   RFRVTSIEPA---NSPFARLSPDTEVIVAP  77



Lambda      K        H        a         alpha
   0.315    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1555409132


Query= TCONS_00017946

Length=1080
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  171     4e-50
CDD:462729 pfam09262, PEX-1N, Peroxisome biogenesis factor 1, N-t...  86.4    4e-21


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 171 bits (435),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 67/131 (51%), Positives = 88/131 (67%), Gaps = 3/131 (2%)

Query  744  LLLYGFPGCGKTLLASAIAGECGLNFISVKGPEILNKYIGASEKSVRDLFERAQAARPCI  803
            LLLYG PG GKT LA A+A E G  FI + G E+++KY+G SEK +R+LFE A+   PC+
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  804  LFFDEFDSIAPKRGHDSTGVTDRVVNQLLTQMDGAEGL-SGVYVLAATSRPDLIDPALLR  862
            +F DE D++A  RG      + RVVNQLLT++DG     S V V+AAT+RPD +DPALL 
Sbjct  61   IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPALL-  119

Query  863  PGRLDKSLLCD  873
             GR D+ +   
Sbjct  120  -GRFDRIIEFP  129


>CDD:462729 pfam09262, PEX-1N, Peroxisome biogenesis factor 1, N-terminal. 
 Members of this family adopt a double psi beta-barrel fold, 
similar in structure to the Cdc48 N-terminal domain. It has 
been suggested that this domain may be involved in interactions 
with ubiquitin, ubiquitin-like protein modifiers, or 
ubiquitin-like domains, such as Ubx. Furthermore, the domain 
may possess a putative adaptor or substrate binding site, allowing 
for peroxisomal biogenesis, membrane fusion and protein 
translocation.
Length=77

 Score = 86.4 bits (215),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 13/76 (17%)

Query  12  VIELHANFLELNLLSQIRALPNPTYSSAQSEHIHPLALHLSPTSTANIIITSLIPAPSNT  71
           ++ELHA FLE NLLSQ+R +               L + +S T+ A   +TS+ PA    
Sbjct  15  ILELHAEFLEDNLLSQVRVVSPG----------QILPVWVSGTTVARFRVTSIEPA---N  61

Query  72  SPFAKIAPDAEVIVAP  87
           SPFA+++PD EVIVAP
Sbjct  62  SPFARLSPDTEVIVAP  77



Lambda      K        H        a         alpha
   0.315    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1393221984


Query= TCONS_00011865

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 346     3e-115
CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-termina...  59.1    9e-12 


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 346 bits (891),  Expect = 3e-115, Method: Composition-based stats.
 Identities = 144/432 (33%), Positives = 209/432 (48%), Gaps = 19/432 (4%)

Query  22   FERKDRPFPDNKVIYIDADTKRQYTYQDVKETALAFGNGLKAVLDWKKGDVLALFTPNCI  81
             ER+    PD K      + +R  TY+++ E A     GL+A L   KGD +A+  PN  
Sbjct  1    LERQAARTPD-KTALEVGEGRR-LTYRELDERANRLAAGLRA-LGVGKGDRVAILLPNSP  57

Query  82   DTPAVMWGTHWAGGVVSPANPAYTVEELAFQLKNSGAKALITQMALLPVARAAAKQAGIT  141
            +          AG V  P NP    EELA+ L++SGAK LIT  AL       A      
Sbjct  58   EWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEV  117

Query  142  EDRIILIGDERDSQTKFKHFSSIRNISGATRYRKTKINPATDLAFLVYSSGTTGVPKGVM  201
               ++++  +   + +     +                   DLA+++Y+SGTTG PKGVM
Sbjct  118  VKLVLVLDRDPVLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIYTSGTTGKPKGVM  174

Query  202  LSHRNIVANSLQLAAGEAKQLSWNGGADGKGDRILAFLPFYHIYGLTCLVHQTIYQGYEL  261
            L+HRN+VAN L +     +     G   G  DR+L+ LP +H +GL+  +   +  G  +
Sbjct  175  LTHRNLVANVLSIKRVRPR-----GFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATV  229

Query  262  YVMAKF---DIEKWCAHVQNYRITFSYVVPPVVLLLGKHPIVDKYDLSSLRMMNSGAAPL  318
             +   F   D       ++ Y++T  Y VP ++ +L +     +  LSSLR++ SG APL
Sbjct  230  VLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPL  289

Query  319  TQELVETVYARIKTGIKQGYGLSETSPTTHTQPWEDWR-TSIGSVGKLLPNMEAKYMTMP  377
              EL           +  GYGL+ET+    T    D    S+GSVG+ LP  E K +   
Sbjct  290  PPELARRFRELFGGALVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIV---  346

Query  378  EDGSEPREVPVGEVGELYLRGPNVFLGYHNNPEATAQCLSKDGWFQTGDVGYQDKDNNFY  437
             D      VP GE GEL +RGP V  GY N+PE TA+   +DGW++TGD+G +D+D    
Sbjct  347  -DDETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYLE  405

Query  438  ITDRVKELIKYK  449
            I  R K+ IK  
Sbjct  406  IVGRKKDQIKLG  417


>CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-terminal domain. 
 This is a small domain that is found C terminal to pfam00501. 
It has a central beta sheet core that is flanked by alpha 
helices.
Length=76

 Score = 59.1 bits (144),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 45/85 (53%), Gaps = 9/85 (11%)

Query  457  ELEGILVDNEAVDDVAVLGVESEAHGTEVPLAYIVRSAKSKNSNITAEEEATRIVQWLDG  516
            E+E  LV + AV + AV+GV  E  G E P+A++V         +  EE    +V  +  
Sbjct  1    EVESALVSHPAVAEAAVVGVPDELKG-EAPVAFVVLKP---GVELLEEE----LVAHVRE  52

Query  517  KVAYHKRLRGGVRFVDEIPKSPSGK  541
            ++  +   +  V FVDE+PK+ SGK
Sbjct  53   ELGPYAVPKE-VVFVDELPKTRSGK  76



Lambda      K        H        a         alpha
   0.317    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 711347728


Query= TCONS_00011866

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 346     3e-115
CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-termina...  59.1    9e-12 


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 346 bits (891),  Expect = 3e-115, Method: Composition-based stats.
 Identities = 144/432 (33%), Positives = 209/432 (48%), Gaps = 19/432 (4%)

Query  22   FERKDRPFPDNKVIYIDADTKRQYTYQDVKETALAFGNGLKAVLDWKKGDVLALFTPNCI  81
             ER+    PD K      + +R  TY+++ E A     GL+A L   KGD +A+  PN  
Sbjct  1    LERQAARTPD-KTALEVGEGRR-LTYRELDERANRLAAGLRA-LGVGKGDRVAILLPNSP  57

Query  82   DTPAVMWGTHWAGGVVSPANPAYTVEELAFQLKNSGAKALITQMALLPVARAAAKQAGIT  141
            +          AG V  P NP    EELA+ L++SGAK LIT  AL       A      
Sbjct  58   EWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEV  117

Query  142  EDRIILIGDERDSQTKFKHFSSIRNISGATRYRKTKINPATDLAFLVYSSGTTGVPKGVM  201
               ++++  +   + +     +                   DLA+++Y+SGTTG PKGVM
Sbjct  118  VKLVLVLDRDPVLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIYTSGTTGKPKGVM  174

Query  202  LSHRNIVANSLQLAAGEAKQLSWNGGADGKGDRILAFLPFYHIYGLTCLVHQTIYQGYEL  261
            L+HRN+VAN L +     +     G   G  DR+L+ LP +H +GL+  +   +  G  +
Sbjct  175  LTHRNLVANVLSIKRVRPR-----GFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATV  229

Query  262  YVMAKF---DIEKWCAHVQNYRITFSYVVPPVVLLLGKHPIVDKYDLSSLRMMNSGAAPL  318
             +   F   D       ++ Y++T  Y VP ++ +L +     +  LSSLR++ SG APL
Sbjct  230  VLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPL  289

Query  319  TQELVETVYARIKTGIKQGYGLSETSPTTHTQPWEDWR-TSIGSVGKLLPNMEAKYMTMP  377
              EL           +  GYGL+ET+    T    D    S+GSVG+ LP  E K +   
Sbjct  290  PPELARRFRELFGGALVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIV---  346

Query  378  EDGSEPREVPVGEVGELYLRGPNVFLGYHNNPEATAQCLSKDGWFQTGDVGYQDKDNNFY  437
             D      VP GE GEL +RGP V  GY N+PE TA+   +DGW++TGD+G +D+D    
Sbjct  347  -DDETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYLE  405

Query  438  ITDRVKELIKYK  449
            I  R K+ IK  
Sbjct  406  IVGRKKDQIKLG  417


>CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-terminal domain. 
 This is a small domain that is found C terminal to pfam00501. 
It has a central beta sheet core that is flanked by alpha 
helices.
Length=76

 Score = 59.1 bits (144),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 45/85 (53%), Gaps = 9/85 (11%)

Query  457  ELEGILVDNEAVDDVAVLGVESEAHGTEVPLAYIVRSAKSKNSNITAEEEATRIVQWLDG  516
            E+E  LV + AV + AV+GV  E  G E P+A++V         +  EE    +V  +  
Sbjct  1    EVESALVSHPAVAEAAVVGVPDELKG-EAPVAFVVLKP---GVELLEEE----LVAHVRE  52

Query  517  KVAYHKRLRGGVRFVDEIPKSPSGK  541
            ++  +   +  V FVDE+PK+ SGK
Sbjct  53   ELGPYAVPKE-VVFVDELPKTRSGK  76



Lambda      K        H        a         alpha
   0.317    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 711347728


Query= TCONS_00011867

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 346     3e-115
CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-termina...  59.1    9e-12 


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 346 bits (891),  Expect = 3e-115, Method: Composition-based stats.
 Identities = 144/432 (33%), Positives = 209/432 (48%), Gaps = 19/432 (4%)

Query  22   FERKDRPFPDNKVIYIDADTKRQYTYQDVKETALAFGNGLKAVLDWKKGDVLALFTPNCI  81
             ER+    PD K      + +R  TY+++ E A     GL+A L   KGD +A+  PN  
Sbjct  1    LERQAARTPD-KTALEVGEGRR-LTYRELDERANRLAAGLRA-LGVGKGDRVAILLPNSP  57

Query  82   DTPAVMWGTHWAGGVVSPANPAYTVEELAFQLKNSGAKALITQMALLPVARAAAKQAGIT  141
            +          AG V  P NP    EELA+ L++SGAK LIT  AL       A      
Sbjct  58   EWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEV  117

Query  142  EDRIILIGDERDSQTKFKHFSSIRNISGATRYRKTKINPATDLAFLVYSSGTTGVPKGVM  201
               ++++  +   + +     +                   DLA+++Y+SGTTG PKGVM
Sbjct  118  VKLVLVLDRDPVLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIYTSGTTGKPKGVM  174

Query  202  LSHRNIVANSLQLAAGEAKQLSWNGGADGKGDRILAFLPFYHIYGLTCLVHQTIYQGYEL  261
            L+HRN+VAN L +     +     G   G  DR+L+ LP +H +GL+  +   +  G  +
Sbjct  175  LTHRNLVANVLSIKRVRPR-----GFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATV  229

Query  262  YVMAKF---DIEKWCAHVQNYRITFSYVVPPVVLLLGKHPIVDKYDLSSLRMMNSGAAPL  318
             +   F   D       ++ Y++T  Y VP ++ +L +     +  LSSLR++ SG APL
Sbjct  230  VLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPL  289

Query  319  TQELVETVYARIKTGIKQGYGLSETSPTTHTQPWEDWR-TSIGSVGKLLPNMEAKYMTMP  377
              EL           +  GYGL+ET+    T    D    S+GSVG+ LP  E K +   
Sbjct  290  PPELARRFRELFGGALVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIV---  346

Query  378  EDGSEPREVPVGEVGELYLRGPNVFLGYHNNPEATAQCLSKDGWFQTGDVGYQDKDNNFY  437
             D      VP GE GEL +RGP V  GY N+PE TA+   +DGW++TGD+G +D+D    
Sbjct  347  -DDETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYLE  405

Query  438  ITDRVKELIKYK  449
            I  R K+ IK  
Sbjct  406  IVGRKKDQIKLG  417


>CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-terminal domain. 
 This is a small domain that is found C terminal to pfam00501. 
It has a central beta sheet core that is flanked by alpha 
helices.
Length=76

 Score = 59.1 bits (144),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 45/85 (53%), Gaps = 9/85 (11%)

Query  457  ELEGILVDNEAVDDVAVLGVESEAHGTEVPLAYIVRSAKSKNSNITAEEEATRIVQWLDG  516
            E+E  LV + AV + AV+GV  E  G E P+A++V         +  EE    +V  +  
Sbjct  1    EVESALVSHPAVAEAAVVGVPDELKG-EAPVAFVVLKP---GVELLEEE----LVAHVRE  52

Query  517  KVAYHKRLRGGVRFVDEIPKSPSGK  541
            ++  +   +  V FVDE+PK+ SGK
Sbjct  53   ELGPYAVPKE-VVFVDELPKTRSGK  76



Lambda      K        H        a         alpha
   0.317    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 711347728


Query= TCONS_00011868

Length=482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 309     8e-102
CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-termina...  58.7    8e-12 


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 309 bits (794),  Expect = 8e-102, Method: Composition-based stats.
 Identities = 124/361 (34%), Positives = 179/361 (50%), Gaps = 16/361 (4%)

Query  7    AGGVVSPANPAYTVEELAFQLKNSGAKALITQMALLPVARAAAKQAGITEDRIILIGDER  66
            AG V  P NP    EELA+ L++SGAK LIT  AL       A         ++++  + 
Sbjct  69   AGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVLDRDP  128

Query  67   DSQTKFKHFSSIRNISGATRYRKTKINPATDLAFLVYSSGTTGVPKGVMLSHRNIVANSL  126
              + +     +                   DLA+++Y+SGTTG PKGVML+HRN+VAN L
Sbjct  129  VLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVL  185

Query  127  QLAAGEAKQLSWNGGADGKGDRILAFLPFYHIYGLTCLVHQTIYQGYELYVMAKF---DI  183
             +     +     G   G  DR+L+ LP +H +GL+  +   +  G  + +   F   D 
Sbjct  186  SIKRVRPR-----GFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDP  240

Query  184  EKWCAHVQNYRITFSYVVPPVVLLLGKHPIVDKYDLSSLRMMNSGAAPLTQELVETVYAR  243
                  ++ Y++T  Y VP ++ +L +     +  LSSLR++ SG APL  EL       
Sbjct  241  AALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFREL  300

Query  244  IKTGIKQGYGLSETSPTTHTQPWEDWR-TSIGSVGKLLPNMEAKYMTMPEDGSEPREVPV  302
                +  GYGL+ET+    T    D    S+GSVG+ LP  E K +    D      VP 
Sbjct  301  FGGALVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIV----DDETGEPVPP  356

Query  303  GEVGELYLRGPNVFLGYHNNPEATAQCLSKDGWFQTGDVGYQDKDNNFYITDRVKELIKY  362
            GE GEL +RGP V  GY N+PE TA+   +DGW++TGD+G +D+D    I  R K+ IK 
Sbjct  357  GEPGELCVRGPGVMKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYLEIVGRKKDQIKL  416

Query  363  K  363
             
Sbjct  417  G  417


>CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-terminal domain. 
 This is a small domain that is found C terminal to pfam00501. 
It has a central beta sheet core that is flanked by alpha 
helices.
Length=76

 Score = 58.7 bits (143),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 45/85 (53%), Gaps = 9/85 (11%)

Query  371  ELEGILVDNEAVDDVAVLGVESEAHGTEVPLAYIVRSAKSKNSNITAEEEATRIVQWLDG  430
            E+E  LV + AV + AV+GV  E  G E P+A++V         +  EE    +V  +  
Sbjct  1    EVESALVSHPAVAEAAVVGVPDELKG-EAPVAFVVLKP---GVELLEEE----LVAHVRE  52

Query  431  KVAYHKRLRGGVRFVDEIPKSPSGK  455
            ++  +   +  V FVDE+PK+ SGK
Sbjct  53   ELGPYAVPKE-VVFVDELPKTRSGK  76



Lambda      K        H        a         alpha
   0.316    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 591999806


Query= TCONS_00011869

Length=1165


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1491182184


Query= TCONS_00011870

Length=1165


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1491182184


Query= TCONS_00011871

Length=694


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 886348790


Query= TCONS_00011874

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461562 pfam05153, MIOX, Myo-inositol oxygenase. MIOX is the e...  479     1e-173


>CDD:461562 pfam05153, MIOX, Myo-inositol oxygenase.  MIOX is the enzyme 
myo-inositol oxygenase. It catalyzes the first committed step 
in the glucuronate-xylulose pathway, It is a di-iron oxygenase 
with a key role in inositol metabolism. The structure reveals 
a monomeric, single-domain protein with a mostly helical 
fold that is distantly related to the diverse HD domain 
superfamily. The structural core is of five alpha-helices that 
contribute six ligands, four His and two Asp, to the di-iron 
centre where the two iron atoms are bridged by a putative 
hydroxide ion and one of the Asp ligands. The substrate is 
myo-inositol is bound in a terminal substrate-binding mode 
to a di-iron cluster. Within the structure are two additional 
proteinous lids that cover and shield the enzyme's active 
site.
Length=249

 Score = 479 bits (1234),  Expect = 1e-173, Method: Composition-based stats.
 Identities = 173/251 (69%), Positives = 202/251 (80%), Gaps = 4/251 (2%)

Query  67   CDRVKNFYREQHTKQTVAYNLKARNDFHSKTRAEMSIWEAMEKLNTLIDESDPDTSLSQI  126
             DRV+ FY+EQHTKQTV + LK R  F   TRA+M+IWEA+E LNTL+DESDPDT L QI
Sbjct  1    KDRVREFYKEQHTKQTVDFVLKMREQFGKFTRAKMTIWEALELLNTLVDESDPDTDLPQI  60

Query  127  EHLLQSAEAIRRD-GKPRWMQLTGLIHDLGKLLYFFDAQGQWDVVGDTFPVGCAFDDRII  185
            +HLLQ+AEAIRRD   P WM LTGLIHDLGK+L FF  + QW VVGDTFPVGCAFD+ I+
Sbjct  61   QHLLQTAEAIRRDHPDPDWMHLTGLIHDLGKVLLFFGGEPQWAVVGDTFPVGCAFDESIV  120

Query  186  YGKESFKENPDYEHEIYGTKYGIYTPGCGLDNMMLSWGHDEYLYHVVK-DQSTLPDEALA  244
            Y  ESFK NPDY +  Y TK GIY PGCGLDN+++SWGHDEYLY V+K ++STLP+EAL 
Sbjct  121  Y-PESFKGNPDYNNPKYNTKLGIYQPGCGLDNVLMSWGHDEYLYQVLKFNKSTLPEEALY  179

Query  245  MIRYHSFYPWHQAGAYHEFMNEKDQKMLQAVKAFNPYDLYSKSDDVPSVEELKPYYLELI  304
            MIRYHSFYPWH+ GAY   MNE+D++ML+ VKAFN YDLYSKSDD P VE LKPYY  LI
Sbjct  180  MIRYHSFYPWHREGAYTHLMNEEDEEMLKWVKAFNKYDLYSKSDDPPDVEALKPYYQSLI  239

Query  305  DEFFPKKVLKW  315
            D++FP  VL+W
Sbjct  240  DKYFP-GVLEW  249



Lambda      K        H        a         alpha
   0.318    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00011872

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461562 pfam05153, MIOX, Myo-inositol oxygenase. MIOX is the e...  479     1e-173


>CDD:461562 pfam05153, MIOX, Myo-inositol oxygenase.  MIOX is the enzyme 
myo-inositol oxygenase. It catalyzes the first committed step 
in the glucuronate-xylulose pathway, It is a di-iron oxygenase 
with a key role in inositol metabolism. The structure reveals 
a monomeric, single-domain protein with a mostly helical 
fold that is distantly related to the diverse HD domain 
superfamily. The structural core is of five alpha-helices that 
contribute six ligands, four His and two Asp, to the di-iron 
centre where the two iron atoms are bridged by a putative 
hydroxide ion and one of the Asp ligands. The substrate is 
myo-inositol is bound in a terminal substrate-binding mode 
to a di-iron cluster. Within the structure are two additional 
proteinous lids that cover and shield the enzyme's active 
site.
Length=249

 Score = 479 bits (1234),  Expect = 1e-173, Method: Composition-based stats.
 Identities = 173/251 (69%), Positives = 202/251 (80%), Gaps = 4/251 (2%)

Query  67   CDRVKNFYREQHTKQTVAYNLKARNDFHSKTRAEMSIWEAMEKLNTLIDESDPDTSLSQI  126
             DRV+ FY+EQHTKQTV + LK R  F   TRA+M+IWEA+E LNTL+DESDPDT L QI
Sbjct  1    KDRVREFYKEQHTKQTVDFVLKMREQFGKFTRAKMTIWEALELLNTLVDESDPDTDLPQI  60

Query  127  EHLLQSAEAIRRD-GKPRWMQLTGLIHDLGKLLYFFDAQGQWDVVGDTFPVGCAFDDRII  185
            +HLLQ+AEAIRRD   P WM LTGLIHDLGK+L FF  + QW VVGDTFPVGCAFD+ I+
Sbjct  61   QHLLQTAEAIRRDHPDPDWMHLTGLIHDLGKVLLFFGGEPQWAVVGDTFPVGCAFDESIV  120

Query  186  YGKESFKENPDYEHEIYGTKYGIYTPGCGLDNMMLSWGHDEYLYHVVK-DQSTLPDEALA  244
            Y  ESFK NPDY +  Y TK GIY PGCGLDN+++SWGHDEYLY V+K ++STLP+EAL 
Sbjct  121  Y-PESFKGNPDYNNPKYNTKLGIYQPGCGLDNVLMSWGHDEYLYQVLKFNKSTLPEEALY  179

Query  245  MIRYHSFYPWHQAGAYHEFMNEKDQKMLQAVKAFNPYDLYSKSDDVPSVEELKPYYLELI  304
            MIRYHSFYPWH+ GAY   MNE+D++ML+ VKAFN YDLYSKSDD P VE LKPYY  LI
Sbjct  180  MIRYHSFYPWHREGAYTHLMNEEDEEMLKWVKAFNKYDLYSKSDDPPDVEALKPYYQSLI  239

Query  305  DEFFPKKVLKW  315
            D++FP  VL+W
Sbjct  240  DKYFP-GVLEW  249



Lambda      K        H        a         alpha
   0.318    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0761    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00017947

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461562 pfam05153, MIOX, Myo-inositol oxygenase. MIOX is the e...  479     1e-173


>CDD:461562 pfam05153, MIOX, Myo-inositol oxygenase.  MIOX is the enzyme 
myo-inositol oxygenase. It catalyzes the first committed step 
in the glucuronate-xylulose pathway, It is a di-iron oxygenase 
with a key role in inositol metabolism. The structure reveals 
a monomeric, single-domain protein with a mostly helical 
fold that is distantly related to the diverse HD domain 
superfamily. The structural core is of five alpha-helices that 
contribute six ligands, four His and two Asp, to the di-iron 
centre where the two iron atoms are bridged by a putative 
hydroxide ion and one of the Asp ligands. The substrate is 
myo-inositol is bound in a terminal substrate-binding mode 
to a di-iron cluster. Within the structure are two additional 
proteinous lids that cover and shield the enzyme's active 
site.
Length=249

 Score = 479 bits (1234),  Expect = 1e-173, Method: Composition-based stats.
 Identities = 173/251 (69%), Positives = 202/251 (80%), Gaps = 4/251 (2%)

Query  67   CDRVKNFYREQHTKQTVAYNLKARNDFHSKTRAEMSIWEAMEKLNTLIDESDPDTSLSQI  126
             DRV+ FY+EQHTKQTV + LK R  F   TRA+M+IWEA+E LNTL+DESDPDT L QI
Sbjct  1    KDRVREFYKEQHTKQTVDFVLKMREQFGKFTRAKMTIWEALELLNTLVDESDPDTDLPQI  60

Query  127  EHLLQSAEAIRRD-GKPRWMQLTGLIHDLGKLLYFFDAQGQWDVVGDTFPVGCAFDDRII  185
            +HLLQ+AEAIRRD   P WM LTGLIHDLGK+L FF  + QW VVGDTFPVGCAFD+ I+
Sbjct  61   QHLLQTAEAIRRDHPDPDWMHLTGLIHDLGKVLLFFGGEPQWAVVGDTFPVGCAFDESIV  120

Query  186  YGKESFKENPDYEHEIYGTKYGIYTPGCGLDNMMLSWGHDEYLYHVVK-DQSTLPDEALA  244
            Y  ESFK NPDY +  Y TK GIY PGCGLDN+++SWGHDEYLY V+K ++STLP+EAL 
Sbjct  121  Y-PESFKGNPDYNNPKYNTKLGIYQPGCGLDNVLMSWGHDEYLYQVLKFNKSTLPEEALY  179

Query  245  MIRYHSFYPWHQAGAYHEFMNEKDQKMLQAVKAFNPYDLYSKSDDVPSVEELKPYYLELI  304
            MIRYHSFYPWH+ GAY   MNE+D++ML+ VKAFN YDLYSKSDD P VE LKPYY  LI
Sbjct  180  MIRYHSFYPWHREGAYTHLMNEEDEEMLKWVKAFNKYDLYSKSDDPPDVEALKPYYQSLI  239

Query  305  DEFFPKKVLKW  315
            D++FP  VL+W
Sbjct  240  DKYFP-GVLEW  249



Lambda      K        H        a         alpha
   0.318    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00017948

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461562 pfam05153, MIOX, Myo-inositol oxygenase. MIOX is the e...  479     1e-173


>CDD:461562 pfam05153, MIOX, Myo-inositol oxygenase.  MIOX is the enzyme 
myo-inositol oxygenase. It catalyzes the first committed step 
in the glucuronate-xylulose pathway, It is a di-iron oxygenase 
with a key role in inositol metabolism. The structure reveals 
a monomeric, single-domain protein with a mostly helical 
fold that is distantly related to the diverse HD domain 
superfamily. The structural core is of five alpha-helices that 
contribute six ligands, four His and two Asp, to the di-iron 
centre where the two iron atoms are bridged by a putative 
hydroxide ion and one of the Asp ligands. The substrate is 
myo-inositol is bound in a terminal substrate-binding mode 
to a di-iron cluster. Within the structure are two additional 
proteinous lids that cover and shield the enzyme's active 
site.
Length=249

 Score = 479 bits (1234),  Expect = 1e-173, Method: Composition-based stats.
 Identities = 173/251 (69%), Positives = 202/251 (80%), Gaps = 4/251 (2%)

Query  67   CDRVKNFYREQHTKQTVAYNLKARNDFHSKTRAEMSIWEAMEKLNTLIDESDPDTSLSQI  126
             DRV+ FY+EQHTKQTV + LK R  F   TRA+M+IWEA+E LNTL+DESDPDT L QI
Sbjct  1    KDRVREFYKEQHTKQTVDFVLKMREQFGKFTRAKMTIWEALELLNTLVDESDPDTDLPQI  60

Query  127  EHLLQSAEAIRRD-GKPRWMQLTGLIHDLGKLLYFFDAQGQWDVVGDTFPVGCAFDDRII  185
            +HLLQ+AEAIRRD   P WM LTGLIHDLGK+L FF  + QW VVGDTFPVGCAFD+ I+
Sbjct  61   QHLLQTAEAIRRDHPDPDWMHLTGLIHDLGKVLLFFGGEPQWAVVGDTFPVGCAFDESIV  120

Query  186  YGKESFKENPDYEHEIYGTKYGIYTPGCGLDNMMLSWGHDEYLYHVVK-DQSTLPDEALA  244
            Y  ESFK NPDY +  Y TK GIY PGCGLDN+++SWGHDEYLY V+K ++STLP+EAL 
Sbjct  121  Y-PESFKGNPDYNNPKYNTKLGIYQPGCGLDNVLMSWGHDEYLYQVLKFNKSTLPEEALY  179

Query  245  MIRYHSFYPWHQAGAYHEFMNEKDQKMLQAVKAFNPYDLYSKSDDVPSVEELKPYYLELI  304
            MIRYHSFYPWH+ GAY   MNE+D++ML+ VKAFN YDLYSKSDD P VE LKPYY  LI
Sbjct  180  MIRYHSFYPWHREGAYTHLMNEEDEEMLKWVKAFNKYDLYSKSDDPPDVEALKPYYQSLI  239

Query  305  DEFFPKKVLKW  315
            D++FP  VL+W
Sbjct  240  DKYFP-GVLEW  249



Lambda      K        H        a         alpha
   0.318    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00011875

Length=311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461562 pfam05153, MIOX, Myo-inositol oxygenase. MIOX is the e...  454     6e-164


>CDD:461562 pfam05153, MIOX, Myo-inositol oxygenase.  MIOX is the enzyme 
myo-inositol oxygenase. It catalyzes the first committed step 
in the glucuronate-xylulose pathway, It is a di-iron oxygenase 
with a key role in inositol metabolism. The structure reveals 
a monomeric, single-domain protein with a mostly helical 
fold that is distantly related to the diverse HD domain 
superfamily. The structural core is of five alpha-helices that 
contribute six ligands, four His and two Asp, to the di-iron 
centre where the two iron atoms are bridged by a putative 
hydroxide ion and one of the Asp ligands. The substrate is 
myo-inositol is bound in a terminal substrate-binding mode 
to a di-iron cluster. Within the structure are two additional 
proteinous lids that cover and shield the enzyme's active 
site.
Length=249

 Score = 454 bits (1170),  Expect = 6e-164, Method: Composition-based stats.
 Identities = 162/233 (70%), Positives = 188/233 (81%), Gaps = 3/233 (1%)

Query  67   CDRVKNFYREQHTKQTVAYNLKARNDFHSKTRAEMSIWEAMEKLNTLIDESDPDTSLSQI  126
             DRV+ FY+EQHTKQTV + LK R  F   TRA+M+IWEA+E LNTL+DESDPDT L QI
Sbjct  1    KDRVREFYKEQHTKQTVDFVLKMREQFGKFTRAKMTIWEALELLNTLVDESDPDTDLPQI  60

Query  127  EHLLQSAEAIRRD-GKPRWMQLTGLIHDLGKLLYFFDAQGQWDVVGDTFPVGCAFDDRII  185
            +HLLQ+AEAIRRD   P WM LTGLIHDLGK+L FF  + QW VVGDTFPVGCAFD+ I+
Sbjct  61   QHLLQTAEAIRRDHPDPDWMHLTGLIHDLGKVLLFFGGEPQWAVVGDTFPVGCAFDESIV  120

Query  186  YGKESFKENPDYEHEIYGTKYGIYTPGCGLDNMMLSWGHDEYLYHVVK-DQSTLPDEALA  244
            Y  ESFK NPDY +  Y TK GIY PGCGLDN+++SWGHDEYLY V+K ++STLP+EAL 
Sbjct  121  Y-PESFKGNPDYNNPKYNTKLGIYQPGCGLDNVLMSWGHDEYLYQVLKFNKSTLPEEALY  179

Query  245  MIRYHSFYPWHQAGAYHEFMNEKDQKMLQAVKAFNPYDLYSKSDDVPSVEELK  297
            MIRYHSFYPWH+ GAY   MNE+D++ML+ VKAFN YDLYSKSDD P VE LK
Sbjct  180  MIRYHSFYPWHREGAYTHLMNEEDEEMLKWVKAFNKYDLYSKSDDPPDVEALK  232



Lambda      K        H        a         alpha
   0.317    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00017949

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461562 pfam05153, MIOX, Myo-inositol oxygenase. MIOX is the e...  479     1e-173


>CDD:461562 pfam05153, MIOX, Myo-inositol oxygenase.  MIOX is the enzyme 
myo-inositol oxygenase. It catalyzes the first committed step 
in the glucuronate-xylulose pathway, It is a di-iron oxygenase 
with a key role in inositol metabolism. The structure reveals 
a monomeric, single-domain protein with a mostly helical 
fold that is distantly related to the diverse HD domain 
superfamily. The structural core is of five alpha-helices that 
contribute six ligands, four His and two Asp, to the di-iron 
centre where the two iron atoms are bridged by a putative 
hydroxide ion and one of the Asp ligands. The substrate is 
myo-inositol is bound in a terminal substrate-binding mode 
to a di-iron cluster. Within the structure are two additional 
proteinous lids that cover and shield the enzyme's active 
site.
Length=249

 Score = 479 bits (1234),  Expect = 1e-173, Method: Composition-based stats.
 Identities = 173/251 (69%), Positives = 202/251 (80%), Gaps = 4/251 (2%)

Query  67   CDRVKNFYREQHTKQTVAYNLKARNDFHSKTRAEMSIWEAMEKLNTLIDESDPDTSLSQI  126
             DRV+ FY+EQHTKQTV + LK R  F   TRA+M+IWEA+E LNTL+DESDPDT L QI
Sbjct  1    KDRVREFYKEQHTKQTVDFVLKMREQFGKFTRAKMTIWEALELLNTLVDESDPDTDLPQI  60

Query  127  EHLLQSAEAIRRD-GKPRWMQLTGLIHDLGKLLYFFDAQGQWDVVGDTFPVGCAFDDRII  185
            +HLLQ+AEAIRRD   P WM LTGLIHDLGK+L FF  + QW VVGDTFPVGCAFD+ I+
Sbjct  61   QHLLQTAEAIRRDHPDPDWMHLTGLIHDLGKVLLFFGGEPQWAVVGDTFPVGCAFDESIV  120

Query  186  YGKESFKENPDYEHEIYGTKYGIYTPGCGLDNMMLSWGHDEYLYHVVK-DQSTLPDEALA  244
            Y  ESFK NPDY +  Y TK GIY PGCGLDN+++SWGHDEYLY V+K ++STLP+EAL 
Sbjct  121  Y-PESFKGNPDYNNPKYNTKLGIYQPGCGLDNVLMSWGHDEYLYQVLKFNKSTLPEEALY  179

Query  245  MIRYHSFYPWHQAGAYHEFMNEKDQKMLQAVKAFNPYDLYSKSDDVPSVEELKPYYLELI  304
            MIRYHSFYPWH+ GAY   MNE+D++ML+ VKAFN YDLYSKSDD P VE LKPYY  LI
Sbjct  180  MIRYHSFYPWHREGAYTHLMNEEDEEMLKWVKAFNKYDLYSKSDDPPDVEALKPYYQSLI  239

Query  305  DEFFPKKVLKW  315
            D++FP  VL+W
Sbjct  240  DKYFP-GVLEW  249



Lambda      K        H        a         alpha
   0.318    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00011877

Length=356


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00011878

Length=316


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00017951

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00017952

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  77.0    3e-17


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 77.0 bits (190),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 56/255 (22%), Positives = 89/255 (35%), Gaps = 38/255 (15%)

Query  4    VLLTGGSGFIAAHCIDVLLARGYDVVVTVRSEEKGQKILEAHPN------TPKERLSFVI  57
            +L+TG +GFI +H +  LL +GY+V+   R          A         T ++ L  ++
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARLADLRFVEGDLTDRDALEKLL  60

Query  58   VKDVAADGAFDEAVKSNPPFDFLDPA------IKGTTGILKAIKAYAPTVKRVVITSSFA  111
              DV  D     A          DP       + GT  +L+A +     VKR +  SS  
Sbjct  61   -ADVRPDAVIHLAAVGGVGASIEDPEDFIEANVLGTLNLLEAARKAG--VKRFLFASSSE  117

Query  112  AIINPKQHAKEYSEENWNPVTWEEALDPSATYRGSKTFAEKAAWDFVEKEKPNFDIATIN  171
                         E      T    L P++ Y  +K   E     +            + 
Sbjct  118  VY--GDGAEIPQEET-----TLTGPLAPNSPYAAAKLAGEWLVLAYA--AAYGLRAVILR  168

Query  172  PPLVLGPIVHYLNSLDAINTSNKRIAEMVRGHCKDGLPPT----GTFL--WVDVRDVALA  225
               V GP        D     ++ I  ++R    +G P      GT    ++ V DVA A
Sbjct  169  LFNVYGP-------GDNEGFVSRVIPALIR-RILEGKPILLWGDGTQRRDFLYVDDVARA  220

Query  226  HVRAIEVPEAGGQRF  240
             + A+E     G+ +
Sbjct  221  ILLALEHGAVKGEIY  235



Lambda      K        H        a         alpha
   0.318    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00011880

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  81.6    9e-19


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 81.6 bits (202),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 62/272 (23%), Positives = 101/272 (37%), Gaps = 45/272 (17%)

Query  4    VLLTGGSGFIAAHCIDVLLARGYDVVVTVRSEEKGQKILEAHPNTPKERLSFVIVKDVAA  63
            +L+TG +GFI +H +  LL +GY+V+   R          A        L FV   D+  
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARLAD-------LRFVEG-DLTD  52

Query  64   DGAFDEAVKSNPPFDYVLHTASPFH--FNVIDPVKDFLDPAIKGTTGILKAIKAYAPTVK  121
              A ++ +    P D V+H A+      ++ DP  DF++  + GT  +L+A +     VK
Sbjct  53   RDALEKLLADVRP-DAVIHLAAVGGVGASIEDPE-DFIEANVLGTLNLLEAARKAG--VK  108

Query  122  RVVITSSFAAIINPKQHAKEYSEENWNPVTWEEALDPSATYRGSKADICTHPKTFAEKAA  181
            R +  SS               E      T    L P++ Y  +K           E   
Sbjct  109  RFLFASSSEVY--GDGAEIPQEET-----TLTGPLAPNSPYAAAKL--------AGEWLV  153

Query  182  WDFVEKEKPNFDIATINPPLVLGPIVHYLNSLDAINTSNKRIAEMVRGHCKDGLPPT---  238
              +            +    V GP        D     ++ I  ++R    +G P     
Sbjct  154  LAYA--AAYGLRAVILRLFNVYGP-------GDNEGFVSRVIPALIR-RILEGKPILLWG  203

Query  239  -GTFL--WVDVRDVALAHVRAIEVPEAGGQRF  267
             GT    ++ V DVA A + A+E     G+ +
Sbjct  204  DGTQRRDFLYVDDVARAILLALEHGAVKGEIY  235



Lambda      K        H        a         alpha
   0.319    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00017953

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00017954

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00017956

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00017955

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00017957

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00011881

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  82.3    5e-19


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 82.3 bits (204),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 60/261 (23%), Positives = 97/261 (37%), Gaps = 37/261 (14%)

Query  26   LGGSGFIAAHCIDVLLARGYDVVVTVRSEEKGQKILEAHPNTPKERLSFVIVKDVAADGA  85
             G +GFI +H +  LL +GY+V+   R          A        L FV   D+    A
Sbjct  4    TGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARLAD-------LRFVEG-DLTDRDA  55

Query  86   FDEAVKSNPPFDYVLHTASPFH--FNVIDPVKDFLDPAIKGTTGILKAIKAYAPTVKRVV  143
             ++ +    P D V+H A+      ++ DP  DF++  + GT  +L+A +     VKR +
Sbjct  56   LEKLLADVRP-DAVIHLAAVGGVGASIEDPE-DFIEANVLGTLNLLEAARKAG--VKRFL  111

Query  144  ITSSFAAIINPKQHAKEYSEENWNPVTWEEALDPSATYRGSKTFAEKAAWDFVEKEKPNF  203
              SS               E      T    L P++ Y  +K   E     +        
Sbjct  112  FASSSEVY--GDGAEIPQEET-----TLTGPLAPNSPYAAAKLAGEWLVLAYA--AAYGL  162

Query  204  DIATINPPLVLGPIVHYLNSLDAINTSNKRIAEMVRGHCKDGLPPT----GTFL--WVDV  257
                +    V GP        D     ++ I  ++R    +G P      GT    ++ V
Sbjct  163  RAVILRLFNVYGP-------GDNEGFVSRVIPALIR-RILEGKPILLWGDGTQRRDFLYV  214

Query  258  RDVALAHVRAIEVPEAGGQRF  278
             DVA A + A+E     G+ +
Sbjct  215  DDVARAILLALEHGAVKGEIY  235



Lambda      K        H        a         alpha
   0.319    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00011882

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  63.9    5e-13


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 63.9 bits (156),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 14/127 (11%)

Query  4    VLLTGGSGFIAAHCIDVLLARGYDVVVTVRSEEKGQKILEAHPNTPKERLSFVIVKDVAA  63
            +L+TG +GFI +H +  LL +GY+V+   R          A        L FV   D+  
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARLAD-------LRFVEG-DLTD  52

Query  64   DGAFDEAVKSNPPFDYVLHTASPFH--FNVIDPVKDFLDPAIKGTTGILKAIKAYAPTVK  121
              A ++ +    P D V+H A+      ++ DP  DF++  + GT  +L+A +     VK
Sbjct  53   RDALEKLLADVRP-DAVIHLAAVGGVGASIEDPE-DFIEANVLGTLNLLEAARKAG--VK  108

Query  122  RVVITSS  128
            R +  SS
Sbjct  109  RFLFASS  115



Lambda      K        H        a         alpha
   0.320    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00011884

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  88.9    2e-21


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 88.9 bits (221),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 62/264 (23%), Positives = 101/264 (38%), Gaps = 37/264 (14%)

Query  4    VLLTGGSGFIAAHCIDVLLARGYDVVVTVRSEEKGQKILEAHPNTPKERLSFVIVKDVAA  63
            +L+TG +GFI +H +  LL +GY+V+   R          A        L FV   D+  
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARLAD-------LRFVEG-DLTD  52

Query  64   DGAFDEAVKSNPPFDYVLHTASPFH--FNVIDPVKDFLDPAIKGTTGILKAIKAYAPTVK  121
              A ++ +    P D V+H A+      ++ DP  DF++  + GT  +L+A +     VK
Sbjct  53   RDALEKLLADVRP-DAVIHLAAVGGVGASIEDPE-DFIEANVLGTLNLLEAARKAG--VK  108

Query  122  RVVITSSFAAIINPKQHAKEYSEENWNPVTWEEALDPSATYRGSKTFAEKAAWDFVEKEK  181
            R +  SS               E      T    L P++ Y  +K   E     +     
Sbjct  109  RFLFASSSEVY--GDGAEIPQEET-----TLTGPLAPNSPYAAAKLAGEWLVLAYA--AA  159

Query  182  PNFDIATINPPLVLGPIVHYLNSLDAINTSNKRIAEMVRGHCKDGLPPT----GTFL--W  235
                   +    V GP        D     ++ I  ++R    +G P      GT    +
Sbjct  160  YGLRAVILRLFNVYGP-------GDNEGFVSRVIPALIR-RILEGKPILLWGDGTQRRDF  211

Query  236  VDVRDVALAHVRAIEVPEAGGQRF  259
            + V DVA A + A+E     G+ +
Sbjct  212  LYVDDVARAILLALEHGAVKGEIY  235



Lambda      K        H        a         alpha
   0.318    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00017958

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  83.5    3e-19


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 83.5 bits (207),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 60/261 (23%), Positives = 98/261 (38%), Gaps = 37/261 (14%)

Query  26   LGGSGFIAAHCIDVLLARGYDVVVTVRSEEKGQKILEAHPNTPKERLSFVIVKDVAADGA  85
             G +GFI +H +  LL +GY+V+   R          A        L FV   D+    A
Sbjct  4    TGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARLAD-------LRFVEG-DLTDRDA  55

Query  86   FDEVIKSNPPFDYVLHTASPFH--FNVIDPVKDFLDPAIKGTTGILKAIKAYAPTVKRVV  143
             ++++    P D V+H A+      ++ DP  DF++  + GT  +L+A +     VKR +
Sbjct  56   LEKLLADVRP-DAVIHLAAVGGVGASIEDPE-DFIEANVLGTLNLLEAARKAG--VKRFL  111

Query  144  ITSSFAAIINPKQHAKEYSEENWNPVTWEEALDPSATYRGSKTFAEKAAWDFVEKEKPNF  203
              SS               E      T    L P++ Y  +K   E     +        
Sbjct  112  FASSSEVY--GDGAEIPQEET-----TLTGPLAPNSPYAAAKLAGEWLVLAYA--AAYGL  162

Query  204  DIATINPPLVLGPIVHYLNSLDAINTSNKRIAEMVRGHCKDGLPPT----GTFL--WVDV  257
                +    V GP        D     ++ I  ++R    +G P      GT    ++ V
Sbjct  163  RAVILRLFNVYGP-------GDNEGFVSRVIPALIR-RILEGKPILLWGDGTQRRDFLYV  214

Query  258  RDVALAHVRAIEVPEAGGQRF  278
             DVA A + A+E     G+ +
Sbjct  215  DDVARAILLALEHGAVKGEIY  235



Lambda      K        H        a         alpha
   0.319    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00017959

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  85.8    1e-20


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 85.8 bits (213),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 61/255 (24%), Positives = 98/255 (38%), Gaps = 37/255 (15%)

Query  4    VLLTGGSGFIAAHCIDVLLARGYDVVVTVRSEEKGQKILEAHPNTPKERLSFVIVKDVAA  63
            +L+TG +GFI +H +  LL +GY+V+   R          A        L FV   D+  
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARLAD-------LRFVEG-DLTD  52

Query  64   DGAFDEAVKSNPPFDYVLHTASPFH--FNVIDPVKDFLDPAIKGTTGILKAIKAYAPTVK  121
              A ++ +    P D V+H A+      ++ DP  DF++  + GT  +L+A +     VK
Sbjct  53   RDALEKLLADVRP-DAVIHLAAVGGVGASIEDPE-DFIEANVLGTLNLLEAARKAG--VK  108

Query  122  RVVITSSFAAIINPKQHAKEYSEENWNPVTWEEALDPSATYRGSKTFAEKAAWDFVEKEK  181
            R +  SS               E      T    L P++ Y  +K   E     +     
Sbjct  109  RFLFASSSEVY--GDGAEIPQEET-----TLTGPLAPNSPYAAAKLAGEWLVLAYA--AA  159

Query  182  PNFDIATINPPLVLGPIVHYLNSLDAINTSNKRIAEMVRGHCKDGLPPT----GTFL--W  235
                   +    V GP        D     ++ I  ++R    +G P      GT    +
Sbjct  160  YGLRAVILRLFNVYGP-------GDNEGFVSRVIPALIR-RILEGKPILLWGDGTQRRDF  211

Query  236  VDVRDVALAHVRAIE  250
            + V DVA A + A+E
Sbjct  212  LYVDDVARAILLALE  226



Lambda      K        H        a         alpha
   0.319    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00011885

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  63.9    5e-13


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 63.9 bits (156),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 14/127 (11%)

Query  4    VLLTGGSGFIAAHCIDVLLARGYDVVVTVRSEEKGQKILEAHPNTPKERLSFVIVKDVAA  63
            +L+TG +GFI +H +  LL +GY+V+   R          A        L FV   D+  
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARLAD-------LRFVEG-DLTD  52

Query  64   DGAFDEAVKSNPPFDYVLHTASPFH--FNVIDPVKDFLDPAIKGTTGILKAIKAYAPTVK  121
              A ++ +    P D V+H A+      ++ DP  DF++  + GT  +L+A +     VK
Sbjct  53   RDALEKLLADVRP-DAVIHLAAVGGVGASIEDPE-DFIEANVLGTLNLLEAARKAG--VK  108

Query  122  RVVITSS  128
            R +  SS
Sbjct  109  RFLFASS  115



Lambda      K        H        a         alpha
   0.320    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00011886

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  63.9    5e-13


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 63.9 bits (156),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 14/127 (11%)

Query  4    VLLTGGSGFIAAHCIDVLLARGYDVVVTVRSEEKGQKILEAHPNTPKERLSFVIVKDVAA  63
            +L+TG +GFI +H +  LL +GY+V+   R          A        L FV   D+  
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARLAD-------LRFVEG-DLTD  52

Query  64   DGAFDEAVKSNPPFDYVLHTASPFH--FNVIDPVKDFLDPAIKGTTGILKAIKAYAPTVK  121
              A ++ +    P D V+H A+      ++ DP  DF++  + GT  +L+A +     VK
Sbjct  53   RDALEKLLADVRP-DAVIHLAAVGGVGASIEDPE-DFIEANVLGTLNLLEAARKAG--VK  108

Query  122  RVVITSS  128
            R +  SS
Sbjct  109  RFLFASS  115



Lambda      K        H        a         alpha
   0.320    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00011887

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  75.8    2e-16


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 75.8 bits (187),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 97/269 (36%), Gaps = 45/269 (17%)

Query  26   LGGSGFIAAHCIDVLLARGYDVVVTVRSEEKGQKILEAHPNTPKERLSFVIVKDVAADGA  85
             G +GFI +H +  LL +GY+V+   R          A        L FV   D+    A
Sbjct  4    TGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARLAD-------LRFVEG-DLTDRDA  55

Query  86   FDEAVKSNPPFDYVLHTASPFH--FNVIDPVKDFLDPAIKGTTGILKAIKAYAPTVKRVV  143
             ++ +    P D V+H A+      ++ DP  DF++  + GT  +L+A +     VKR +
Sbjct  56   LEKLLADVRP-DAVIHLAAVGGVGASIEDPE-DFIEANVLGTLNLLEAARKAG--VKRFL  111

Query  144  ITSSFAAIINPKQHAKEYSEENWNPVTWEEALDPSATYRGSKADICTHPKTFAEKAAWDF  203
              SS               E      T    L P++ Y  +K           E     +
Sbjct  112  FASSSEVY--GDGAEIPQEET-----TLTGPLAPNSPYAAAKL--------AGEWLVLAY  156

Query  204  VEKEKPNFDIATINPPLVLGPIVHYLNSLDAINTSNKRIAEMVRGHCKDGLPPT----GT  259
                        +    V GP        D     ++ I  ++R    +G P      GT
Sbjct  157  A--AAYGLRAVILRLFNVYGP-------GDNEGFVSRVIPALIR-RILEGKPILLWGDGT  206

Query  260  FL--WVDVRDVALAHVRAIEVPEAGGQRF  286
                ++ V DVA A + A+E     G+ +
Sbjct  207  QRRDFLYVDDVARAILLALEHGAVKGEIY  235



Lambda      K        H        a         alpha
   0.319    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00011888

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00011889

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463327 pfam11709, Mit_ribos_Mrp51, Mitochondrial ribosomal pr...  429     7e-150


>CDD:463327 pfam11709, Mit_ribos_Mrp51, Mitochondrial ribosomal protein subunit. 
 This family is the mitochondrial ribosomal small-subunit 
protein Mrp51. Its function is not entirely clear, but 
deletion of the MRP51 gene completely blocked mitochondrial 
gene expression.
Length=358

 Score = 429 bits (1105),  Expect = 7e-150, Method: Composition-based stats.
 Identities = 173/390 (44%), Positives = 218/390 (56%), Gaps = 37/390 (9%)

Query  6    LSPTANLLRKSRLFALPSALPLPQQDATSKTVFESNTATLPHPIRASIVTPASSLARGDW  65
            LSP ANLLR SRLF +P  LP          +  S+TATLP+P    I TP SSLARGDW
Sbjct  1    LSPGANLLRNSRLFQVPKPLP--------PPLRRSDTATLPYPTHQIITTPPSSLARGDW  52

Query  66   GLKRPLPAKSTSEKSSRPVIRLNVLDTFEHVTDFESAADHTVTLEKFQELHMPMSLPSKV  125
            GLKRPLP+K ++     P IR+N LDT E +TDFESAADH  TL KFQEL +P+      
Sbjct  53   GLKRPLPSKIST-----PYIRVNDLDTLERITDFESAADHQWTLLKFQELGLPLDS----  103

Query  126  NYATSMVPRHQSPFESVVDNTDTSKSLQEPGAKQFRHSGPWLAGQTEAEFNAYLNK-VRA  184
              ++     H+S FE           +     K+++ SGP  AG TE EF++YLNK VR 
Sbjct  104  --SSREALPHKSVFED---------DIHAAEDKRWKFSGPLFAGMTEGEFSSYLNKKVRP  152

Query  185  RKPELLQKLREHFITKRTAERRKQAQDNGEDLEALGPL-NVTEEEFQRYIKSLRADPFSL  243
            R+PE  + LRE+    +TAE R+ A D GE  EAL P+ ++TEEE   Y++ LRAD   L
Sbjct  153  RRPEFRKWLRENHPEDKTAEARRAALDKGE--EALLPVSDITEEELTEYLRKLRADRQLL  210

Query  244  GPVVFELLDLPSPPAVPSDRIGHKYYQSPGTKLSSAEYAVSGPPKTHPSAGLSYTRSHAL  303
              +V + LDL       S        +   + LS A    +GPPKTHPSAGLSY R+   
Sbjct  211  YSLVSKFLDLAPLVPKSSIGQSLASLELNLSDLSKAR---AGPPKTHPSAGLSYLRTGRY  267

Query  304  IYNHPKFGPQAYQRPVQARILRPKGRFKGKTSKAIAGVGGIAVEDLNAMTFIEQGSPAGL  363
            + NHP +GPQ  + PV  RIL P+    G  SKA  GVGG      +  T     +  G+
Sbjct  268  LENHPLYGPQKQKTPVPGRILNPRTSSDG-NSKAALGVGGFVANVPSGSTTSSNTNY-GM  325

Query  364  GYFDASIPGGAKYWVTPIRASVDSDGRIAL  393
               D   P GAK  V P  ASVDS+GR+ L
Sbjct  326  NAPDGDHPRGAKIPVEPKEASVDSNGRVRL  355



Lambda      K        H        a         alpha
   0.314    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00011890

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463327 pfam11709, Mit_ribos_Mrp51, Mitochondrial ribosomal pr...  429     7e-150


>CDD:463327 pfam11709, Mit_ribos_Mrp51, Mitochondrial ribosomal protein subunit. 
 This family is the mitochondrial ribosomal small-subunit 
protein Mrp51. Its function is not entirely clear, but 
deletion of the MRP51 gene completely blocked mitochondrial 
gene expression.
Length=358

 Score = 429 bits (1105),  Expect = 7e-150, Method: Composition-based stats.
 Identities = 173/390 (44%), Positives = 218/390 (56%), Gaps = 37/390 (9%)

Query  6    LSPTANLLRKSRLFALPSALPLPQQDATSKTVFESNTATLPHPIRASIVTPASSLARGDW  65
            LSP ANLLR SRLF +P  LP          +  S+TATLP+P    I TP SSLARGDW
Sbjct  1    LSPGANLLRNSRLFQVPKPLP--------PPLRRSDTATLPYPTHQIITTPPSSLARGDW  52

Query  66   GLKRPLPAKSTSEKSSRPVIRLNVLDTFEHVTDFESAADHTVTLEKFQELHMPMSLPSKV  125
            GLKRPLP+K ++     P IR+N LDT E +TDFESAADH  TL KFQEL +P+      
Sbjct  53   GLKRPLPSKIST-----PYIRVNDLDTLERITDFESAADHQWTLLKFQELGLPLDS----  103

Query  126  NYATSMVPRHQSPFESVVDNTDTSKSLQEPGAKQFRHSGPWLAGQTEAEFNAYLNK-VRA  184
              ++     H+S FE           +     K+++ SGP  AG TE EF++YLNK VR 
Sbjct  104  --SSREALPHKSVFED---------DIHAAEDKRWKFSGPLFAGMTEGEFSSYLNKKVRP  152

Query  185  RKPELLQKLREHFITKRTAERRKQAQDNGEDLEALGPL-NVTEEEFQRYIKSLRADPFSL  243
            R+PE  + LRE+    +TAE R+ A D GE  EAL P+ ++TEEE   Y++ LRAD   L
Sbjct  153  RRPEFRKWLRENHPEDKTAEARRAALDKGE--EALLPVSDITEEELTEYLRKLRADRQLL  210

Query  244  GPVVFELLDLPSPPAVPSDRIGHKYYQSPGTKLSSAEYAVSGPPKTHPSAGLSYTRSHAL  303
              +V + LDL       S        +   + LS A    +GPPKTHPSAGLSY R+   
Sbjct  211  YSLVSKFLDLAPLVPKSSIGQSLASLELNLSDLSKAR---AGPPKTHPSAGLSYLRTGRY  267

Query  304  IYNHPKFGPQAYQRPVQARILRPKGRFKGKTSKAIAGVGGIAVEDLNAMTFIEQGSPAGL  363
            + NHP +GPQ  + PV  RIL P+    G  SKA  GVGG      +  T     +  G+
Sbjct  268  LENHPLYGPQKQKTPVPGRILNPRTSSDG-NSKAALGVGGFVANVPSGSTTSSNTNY-GM  325

Query  364  GYFDASIPGGAKYWVTPIRASVDSDGRIAL  393
               D   P GAK  V P  ASVDS+GR+ L
Sbjct  326  NAPDGDHPRGAKIPVEPKEASVDSNGRVRL  355



Lambda      K        H        a         alpha
   0.314    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00017960

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463327 pfam11709, Mit_ribos_Mrp51, Mitochondrial ribosomal pr...  429     7e-150


>CDD:463327 pfam11709, Mit_ribos_Mrp51, Mitochondrial ribosomal protein subunit. 
 This family is the mitochondrial ribosomal small-subunit 
protein Mrp51. Its function is not entirely clear, but 
deletion of the MRP51 gene completely blocked mitochondrial 
gene expression.
Length=358

 Score = 429 bits (1105),  Expect = 7e-150, Method: Composition-based stats.
 Identities = 173/390 (44%), Positives = 218/390 (56%), Gaps = 37/390 (9%)

Query  6    LSPTANLLRKSRLFALPSALPLPQQDATSKTVFESNTATLPHPIRASIVTPASSLARGDW  65
            LSP ANLLR SRLF +P  LP          +  S+TATLP+P    I TP SSLARGDW
Sbjct  1    LSPGANLLRNSRLFQVPKPLP--------PPLRRSDTATLPYPTHQIITTPPSSLARGDW  52

Query  66   GLKRPLPAKSTSEKSSRPVIRLNVLDTFEHVTDFESAADHTVTLEKFQELHMPMSLPSKV  125
            GLKRPLP+K ++     P IR+N LDT E +TDFESAADH  TL KFQEL +P+      
Sbjct  53   GLKRPLPSKIST-----PYIRVNDLDTLERITDFESAADHQWTLLKFQELGLPLDS----  103

Query  126  NYATSMVPRHQSPFESVVDNTDTSKSLQEPGAKQFRHSGPWLAGQTEAEFNAYLNK-VRA  184
              ++     H+S FE           +     K+++ SGP  AG TE EF++YLNK VR 
Sbjct  104  --SSREALPHKSVFED---------DIHAAEDKRWKFSGPLFAGMTEGEFSSYLNKKVRP  152

Query  185  RKPELLQKLREHFITKRTAERRKQAQDNGEDLEALGPL-NVTEEEFQRYIKSLRADPFSL  243
            R+PE  + LRE+    +TAE R+ A D GE  EAL P+ ++TEEE   Y++ LRAD   L
Sbjct  153  RRPEFRKWLRENHPEDKTAEARRAALDKGE--EALLPVSDITEEELTEYLRKLRADRQLL  210

Query  244  GPVVFELLDLPSPPAVPSDRIGHKYYQSPGTKLSSAEYAVSGPPKTHPSAGLSYTRSHAL  303
              +V + LDL       S        +   + LS A    +GPPKTHPSAGLSY R+   
Sbjct  211  YSLVSKFLDLAPLVPKSSIGQSLASLELNLSDLSKAR---AGPPKTHPSAGLSYLRTGRY  267

Query  304  IYNHPKFGPQAYQRPVQARILRPKGRFKGKTSKAIAGVGGIAVEDLNAMTFIEQGSPAGL  363
            + NHP +GPQ  + PV  RIL P+    G  SKA  GVGG      +  T     +  G+
Sbjct  268  LENHPLYGPQKQKTPVPGRILNPRTSSDG-NSKAALGVGGFVANVPSGSTTSSNTNY-GM  325

Query  364  GYFDASIPGGAKYWVTPIRASVDSDGRIAL  393
               D   P GAK  V P  ASVDS+GR+ L
Sbjct  326  NAPDGDHPRGAKIPVEPKEASVDSNGRVRL  355



Lambda      K        H        a         alpha
   0.314    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00011891

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425895 pfam00833, Ribosomal_S17e, Ribosomal S17                   217     6e-74


>CDD:425895 pfam00833, Ribosomal_S17e, Ribosomal S17.  
Length=122

 Score = 217 bits (555),  Expect = 6e-74, Method: Composition-based stats.
 Identities = 88/124 (71%), Positives = 102/124 (82%), Gaps = 5/124 (4%)

Query  60   MGRVRTKTVKRSAKVIIERYYPKLTLDFETNKRLCDEIAIIASKRLRNKIAGYTTHLMKR  119
            MGRVRTKTVK++A+VIIE+YY +LT DF TNKR+C+E+AII SKRLRNKIAGY THLMKR
Sbjct  1    MGRVRTKTVKKAARVIIEKYYSRLTNDFHTNKRICEEVAIIPSKRLRNKIAGYVTHLMKR  60

Query  120  IQRGPVRGISFKLQEEERERKDQYVPEVSALDVSQTESGQLDVDADTKDLLKSMGVSSVL  179
            IQRGPVRGIS KLQEEERER+D YVPEVSALD    E     VD DTK++LKS+G  ++ 
Sbjct  61   IQRGPVRGISLKLQEEERERRDNYVPEVSALDQEIIE-----VDPDTKEMLKSLGFGNLP  115

Query  180  NAVV  183
            N  V
Sbjct  116  NLQV  119



Lambda      K        H        a         alpha
   0.317    0.131    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00011892

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425895 pfam00833, Ribosomal_S17e, Ribosomal S17                   103     5e-31


>CDD:425895 pfam00833, Ribosomal_S17e, Ribosomal S17.  
Length=122

 Score = 103 bits (259),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 46/67 (69%), Positives = 50/67 (75%), Gaps = 5/67 (7%)

Query  1    MKRIQRGPVRGISFKLQEEERERKDQYVPEVSALDVSQTESGQLDVDADTKDLLKSMGFD  60
            MKRIQRGPVRGIS KLQEEERER+D YVPEVSALD    E     VD DTK++LKS+GF 
Sbjct  58   MKRIQRGPVRGISLKLQEEERERRDNYVPEVSALDQEIIE-----VDPDTKEMLKSLGFG  112

Query  61   NLKVNVV  67
            NL    V
Sbjct  113  NLPNLQV  119



Lambda      K        H        a         alpha
   0.315    0.132    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00011893

Length=74
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425895 pfam00833, Ribosomal_S17e, Ribosomal S17                   100     4e-30


>CDD:425895 pfam00833, Ribosomal_S17e, Ribosomal S17.  
Length=122

 Score = 100 bits (252),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 44/67 (66%), Positives = 50/67 (75%), Gaps = 5/67 (7%)

Query  1    MKRIQRGPVRGISFKLQEEERERKDQYVPEVSALDVSQTESGQLDVDADTKDLLKSMGVS  60
            MKRIQRGPVRGIS KLQEEERER+D YVPEVSALD    E     VD DTK++LKS+G  
Sbjct  58   MKRIQRGPVRGISLKLQEEERERRDNYVPEVSALDQEIIE-----VDPDTKEMLKSLGFG  112

Query  61   SVLNAVV  67
            ++ N  V
Sbjct  113  NLPNLQV  119



Lambda      K        H        a         alpha
   0.314    0.131    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00011894

Length=1221


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1569371512


Query= TCONS_00011895

Length=1221


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1569371512


Query= TCONS_00011896

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0706    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00011897

Length=530


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 664674974


Query= TCONS_00011898

Length=1201


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1541446752


Query= TCONS_00011899

Length=1201


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1541446752


Query= TCONS_00011900

Length=1221


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1569371512


Query= TCONS_00011901

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00011902

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00017962

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00011903

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463028 pfam10255, Paf67, RNA polymerase I-associated factor P...  458     1e-163


>CDD:463028 pfam10255, Paf67, RNA polymerase I-associated factor PAF67.  
RNA polymerase I is a multisubunit enzyme and its transcription 
competence is dependent on the presence of PAF67. This family 
of proteins is conserved from worms to humans.
Length=399

 Score = 458 bits (1180),  Expect = 1e-163, Method: Composition-based stats.
 Identities = 161/285 (56%), Positives = 211/285 (74%), Gaps = 7/285 (2%)

Query  1    MLGYFSIIGLLRVHCLLGDFSLALKTLDDIEMNKKAMFARVMAAHFTTYYYVGFSYMMMR  60
            MLGYFS+IGLLRVH LLGD+ LALK L++I++NKKA++++V A H TTYYYVGF+Y+M+R
Sbjct  117  MLGYFSLIGLLRVHVLLGDYYLALKVLENIDLNKKALYSKVPACHVTTYYYVGFAYLMLR  176

Query  61   RYGDAIRMFSHILVYVSRTKN-FQKGGNSYDAIAKKNDQMYALIAICVALHPTRLDDTIH  119
            RY DAIR FS IL+Y+ RTK  +Q     YD I K+NDQMYAL+AIC+AL P RLD++IH
Sbjct  177  RYKDAIRTFSSILLYIQRTKQLYQTRSYQYDQINKQNDQMYALLAICLALCPQRLDESIH  236

Query  120  SALREKYGEQLLRLQHGGPDALPLFEELFRSACPKFISPTPPDFDNPALN--IDPVDHHT  177
            S L+EKYGE+L ++Q G    L  FEELF  ACPKFISP  PD+++P  N   +P     
Sbjct  237  SQLKEKYGEKLYKMQRG---DLQAFEELFLFACPKFISPVSPDYEDPNANEAKEPTQRQL  293

Query  178  AIFMDEVKNTLYNPTIRSYLKLYTTMDLKKLAGFLEVQPEVLRSWLLVNKQRSRQVRWVE  237
             +F+ EVK     PT+RSYLKLYTT+ L+KLA FL+V  E LRS LL  K + RQ+ W E
Sbjct  294  KVFLKEVKQQKLLPTLRSYLKLYTTIPLEKLASFLDVDEEELRSQLLCFKHKMRQLVWTE  353

Query  238  GG-LLEGEVVSANDLDYALENDLIHVSETKAGRRLVDWYLRNLAR  281
            GG LL+GE  S +DLD+ ++ D+IH++ETK  RR  D+++R +A+
Sbjct  354  GGSLLDGEFQSTSDLDFYIDGDMIHIAETKVARRYGDYFIRQIAK  398



Lambda      K        H        a         alpha
   0.325    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00011904

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463028 pfam10255, Paf67, RNA polymerase I-associated factor P...  458     1e-163


>CDD:463028 pfam10255, Paf67, RNA polymerase I-associated factor PAF67.  
RNA polymerase I is a multisubunit enzyme and its transcription 
competence is dependent on the presence of PAF67. This family 
of proteins is conserved from worms to humans.
Length=399

 Score = 458 bits (1180),  Expect = 1e-163, Method: Composition-based stats.
 Identities = 161/285 (56%), Positives = 211/285 (74%), Gaps = 7/285 (2%)

Query  1    MLGYFSIIGLLRVHCLLGDFSLALKTLDDIEMNKKAMFARVMAAHFTTYYYVGFSYMMMR  60
            MLGYFS+IGLLRVH LLGD+ LALK L++I++NKKA++++V A H TTYYYVGF+Y+M+R
Sbjct  117  MLGYFSLIGLLRVHVLLGDYYLALKVLENIDLNKKALYSKVPACHVTTYYYVGFAYLMLR  176

Query  61   RYGDAIRMFSHILVYVSRTKN-FQKGGNSYDAIAKKNDQMYALIAICVALHPTRLDDTIH  119
            RY DAIR FS IL+Y+ RTK  +Q     YD I K+NDQMYAL+AIC+AL P RLD++IH
Sbjct  177  RYKDAIRTFSSILLYIQRTKQLYQTRSYQYDQINKQNDQMYALLAICLALCPQRLDESIH  236

Query  120  SALREKYGEQLLRLQHGGPDALPLFEELFRSACPKFISPTPPDFDNPALN--IDPVDHHT  177
            S L+EKYGE+L ++Q G    L  FEELF  ACPKFISP  PD+++P  N   +P     
Sbjct  237  SQLKEKYGEKLYKMQRG---DLQAFEELFLFACPKFISPVSPDYEDPNANEAKEPTQRQL  293

Query  178  AIFMDEVKNTLYNPTIRSYLKLYTTMDLKKLAGFLEVQPEVLRSWLLVNKQRSRQVRWVE  237
             +F+ EVK     PT+RSYLKLYTT+ L+KLA FL+V  E LRS LL  K + RQ+ W E
Sbjct  294  KVFLKEVKQQKLLPTLRSYLKLYTTIPLEKLASFLDVDEEELRSQLLCFKHKMRQLVWTE  353

Query  238  GG-LLEGEVVSANDLDYALENDLIHVSETKAGRRLVDWYLRNLAR  281
            GG LL+GE  S +DLD+ ++ D+IH++ETK  RR  D+++R +A+
Sbjct  354  GGSLLDGEFQSTSDLDFYIDGDMIHIAETKVARRYGDYFIRQIAK  398



Lambda      K        H        a         alpha
   0.325    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00011905

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00011906

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00011908

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00011907

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00017965

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00017964

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00017966

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00017967

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00017968

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00017969

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00017970

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00011912

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00011910

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00011909

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00011911

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00011913

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00011914

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00017971

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00011915

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00011917

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00011916

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00011918

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00011920

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00011919

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00017972

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV. Th...  94.0    1e-23


>CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV.  The D-amino 
acid transferases (D-AAT) are required by bacteria to catalyze 
the synthesis of D-glutamic acid and D-alanine, which 
are essential constituents of bacterial cell wall and are the 
building block for other D-amino acids. Despite the difference 
in the structure of the substrates, D-AATs and L-ATTs 
have strong similarity.
Length=221

 Score = 94.0 bits (234),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 91/199 (46%), Gaps = 36/199 (18%)

Query  37   YLRPTLIGSGPHLGVQTPK-EALLFIIAVPWPDPSKKPVAPGTKPGLKLLASHPETIRAW  95
             LR T+       G+ T      +F+ A+P P  SKK           L+  +P      
Sbjct  58   RLRLTVSRGPGGFGLPTSDPTLAIFVSALPPPPESKKKG-----VISSLVRRNP------  106

Query  96   PGGFGYAKLGANYGPSLSAHGQAQALGFDQVLWLFGEDRQVTEAGASNFFIIWENKDTGR  155
            P     AK   NY  ++ A  +A+A G D  L L  ED  VTE   SN F++        
Sbjct  107  PSPLPGAK-TLNYLENVLARREAKAQGADDAL-LLDEDGNVTEGSTSNVFLVKGGT----  160

Query  156  LELVTAPLENQLILAGVTRRSVLELARSRLTKPVGSLAPVDVVEKALTIGDVELAWKEGR  215
              L T PLE+  IL G+TR+++L+LA++           ++V E+ +T+ D++ A     
Sbjct  161  --LYTPPLES-GILPGITRQALLDLAKAL---------GLEVEERPITLADLQEA-----  203

Query  216  VVEAFVSGTAYFITPVKLV  234
              EAF++ +   +TPV  +
Sbjct  204  -DEAFLTNSLRGVTPVSSI  221



Lambda      K        H        a         alpha
   0.318    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00011922

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV. Th...  109     2e-28


>CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV.  The D-amino 
acid transferases (D-AAT) are required by bacteria to catalyze 
the synthesis of D-glutamic acid and D-alanine, which 
are essential constituents of bacterial cell wall and are the 
building block for other D-amino acids. Despite the difference 
in the structure of the substrates, D-AATs and L-ATTs 
have strong similarity.
Length=221

 Score = 109 bits (274),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 75/269 (28%), Positives = 121/269 (45%), Gaps = 51/269 (19%)

Query  82   CFEGMKVYRGYDGKLRLFRPDCNGERLVMSAQR-TSLPTFRFEELKVLIAKLMQIDGPRW  140
             FE ++VY G     ++F  D +  RL  SA+       F  E+L+ +I +L++ +G   
Sbjct  2    VFETLRVYNG-----KIFFLDEHLARLRRSAKLLGIPLPFDEEDLRKIIEELLKANGLG-  55

Query  141  LPKDQPGRFLYLRPTLIGSGPHLGVQTPK-EALLFIIAVPWPDPSKKPVAPGTKPGLKLL  199
                       LR T+       G+ T      +F+ A+P P  SKK           L+
Sbjct  56   --------VGRLRLTVSRGPGGFGLPTSDPTLAIFVSALPPPPESKKKG-----VISSLV  102

Query  200  ASHPETIRAWPGGFGYAKLGANYGPSLSAHGQAQALGFDQVLWLFGEDRQVTEAGASNFF  259
              +P      P     AK   NY  ++ A  +A+A G D  L L  ED  VTE   SN F
Sbjct  103  RRNP------PSPLPGAK-TLNYLENVLARREAKAQGADDAL-LLDEDGNVTEGSTSNVF  154

Query  260  IIWENKDTGRLELVTAPLENQLILAGVTRRSVLELARSRLTKPVGSLAPVDVVEKALTIG  319
            ++          L T PLE+  IL G+TR+++L+LA++           ++V E+ +T+ 
Sbjct  155  LVKGGT------LYTPPLES-GILPGITRQALLDLAKAL---------GLEVEERPITLA  198

Query  320  DVELAWKEGRVVEAFVSGTAYFITPVKLV  348
            D++ A       EAF++ +   +TPV  +
Sbjct  199  DLQEA------DEAFLTNSLRGVTPVSSI  221



Lambda      K        H        a         alpha
   0.318    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00011924

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV. Th...  85.5    7e-21


>CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV.  The D-amino 
acid transferases (D-AAT) are required by bacteria to catalyze 
the synthesis of D-glutamic acid and D-alanine, which 
are essential constituents of bacterial cell wall and are the 
building block for other D-amino acids. Despite the difference 
in the structure of the substrates, D-AATs and L-ATTs 
have strong similarity.
Length=221

 Score = 85.5 bits (212),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 55/191 (29%), Positives = 86/191 (45%), Gaps = 36/191 (19%)

Query  37   YLRPTLIGSGPHLGVQTPK-EALLFIIAVPWPDPSKKPVAPGTKPGLKLLASHPETIRAW  95
             LR T+       G+ T      +F+ A+P P  SKK           L+  +P      
Sbjct  58   RLRLTVSRGPGGFGLPTSDPTLAIFVSALPPPPESKKKG-----VISSLVRRNP------  106

Query  96   PGGFGYAKLGANYGPSLSAHGQAQALGFDQVLWLFGEDRQVTEAGASNFFIIWENKDTGR  155
            P     AK   NY  ++ A  +A+A G D  L L  ED  VTE   SN F++        
Sbjct  107  PSPLPGAK-TLNYLENVLARREAKAQGADDAL-LLDEDGNVTEGSTSNVFLVKGGT----  160

Query  156  LELVTAPLENQLILAGVTRRSVLELARSRLTKPVGSLAPVDVVEKALTIGDVELAWKEGR  215
              L T PLE+  IL G+TR+++L+LA++           ++V E+ +T+ D++ A     
Sbjct  161  --LYTPPLES-GILPGITRQALLDLAKAL---------GLEVEERPITLADLQEA-----  203

Query  216  VVEAFVSGTAV  226
              EAF++ +  
Sbjct  204  -DEAFLTNSLR  213



Lambda      K        H        a         alpha
   0.318    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0716    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00017975

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV. Th...  93.6    4e-23


>CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV.  The D-amino 
acid transferases (D-AAT) are required by bacteria to catalyze 
the synthesis of D-glutamic acid and D-alanine, which 
are essential constituents of bacterial cell wall and are the 
building block for other D-amino acids. Despite the difference 
in the structure of the substrates, D-AATs and L-ATTs 
have strong similarity.
Length=221

 Score = 93.6 bits (233),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 91/199 (46%), Gaps = 36/199 (18%)

Query  90   YLRPTLIGSGPHLGVQTPK-EALLFIIAVPWPDPSKKPVAPGTKPGLKLLASHPETIRAW  148
             LR T+       G+ T      +F+ A+P P  SKK           L+  +P      
Sbjct  58   RLRLTVSRGPGGFGLPTSDPTLAIFVSALPPPPESKKKG-----VISSLVRRNP------  106

Query  149  PGGFGYAKLGANYGPSLSAHGQAQALGFDQVLWLFGEDRQVTEAGASNFFIIWENKDTGR  208
            P     AK   NY  ++ A  +A+A G D  L L  ED  VTE   SN F++        
Sbjct  107  PSPLPGAK-TLNYLENVLARREAKAQGADDAL-LLDEDGNVTEGSTSNVFLVKGGT----  160

Query  209  LELVTAPLENQLILAGVTRRSVLELARSRLTKPVGSLAPVDVVEKALTIGDVELAWKEGR  268
              L T PLE+  IL G+TR+++L+LA++           ++V E+ +T+ D++ A     
Sbjct  161  --LYTPPLES-GILPGITRQALLDLAKAL---------GLEVEERPITLADLQEA-----  203

Query  269  VVEAFVSGTAYFITPVKLV  287
              EAF++ +   +TPV  +
Sbjct  204  -DEAFLTNSLRGVTPVSSI  221



Lambda      K        H        a         alpha
   0.319    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00017976

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV. Th...  101     9e-26


>CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV.  The D-amino 
acid transferases (D-AAT) are required by bacteria to catalyze 
the synthesis of D-glutamic acid and D-alanine, which 
are essential constituents of bacterial cell wall and are the 
building block for other D-amino acids. Despite the difference 
in the structure of the substrates, D-AATs and L-ATTs 
have strong similarity.
Length=221

 Score = 101 bits (253),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 72/261 (28%), Positives = 116/261 (44%), Gaps = 51/261 (20%)

Query  82   CFEGMKVYRGYDGKLRLFRPDCNGERLVMSAQR-TSLPTFRFEELKVLIAKLMQIDGPRW  140
             FE ++VY G     ++F  D +  RL  SA+       F  E+L+ +I +L++ +G   
Sbjct  2    VFETLRVYNG-----KIFFLDEHLARLRRSAKLLGIPLPFDEEDLRKIIEELLKANGLG-  55

Query  141  LPKDQPGRFLYLRPTLIGSGPHLGVQTPK-EALLFIIAVPWPDPSKKPVAPGTKPGLKLL  199
                       LR T+       G+ T      +F+ A+P P  SKK           L+
Sbjct  56   --------VGRLRLTVSRGPGGFGLPTSDPTLAIFVSALPPPPESKKKG-----VISSLV  102

Query  200  ASHPETIRAWPGGFGYAKLGANYGPSLSAHGQAQALGFDQVLWLFGEDRQVTEAGASNFF  259
              +P      P     AK   NY  ++ A  +A+A G D  L L  ED  VTE   SN F
Sbjct  103  RRNP------PSPLPGAK-TLNYLENVLARREAKAQGADDAL-LLDEDGNVTEGSTSNVF  154

Query  260  IIWENKDTGRLELVTAPLENQLILAGVTRRSVLELARSRLTKPVGSLAPVDVVEKALTIG  319
            ++          L T PLE+  IL G+TR+++L+LA++           ++V E+ +T+ 
Sbjct  155  LVKGGT------LYTPPLES-GILPGITRQALLDLAKAL---------GLEVEERPITLA  198

Query  320  DVELAWKEGRVVEAFVSGTAV  340
            D++ A       EAF++ +  
Sbjct  199  DLQEA------DEAFLTNSLR  213



Lambda      K        H        a         alpha
   0.318    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00011925

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00011928

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00011926

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00011927

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00017977

Length=361


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00011929

Length=435


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 529127880


Query= TCONS_00017978

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00011930

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00017979

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00017980

Length=649
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464248 pfam14666, RICTOR_M, Rapamycin-insensitive companion o...  165     2e-49
CDD:464245 pfam14663, RasGEF_N_2, Rapamycin-insensitive companion...  160     2e-47
CDD:464249 pfam14668, RICTOR_V, Rapamycin-insensitive companion o...  119     6e-33


>CDD:464248 pfam14666, RICTOR_M, Rapamycin-insensitive companion of mTOR, 
middle domain.  Rictor appears to serve as a scaffolding protein 
that is important for maintaining mTORC2 integrity. The 
mammalian target of rapamycin (mTOR) is a conserved Ser/Thr 
kinase that forms two functionally distinct complexes, mTROC1 
and mTORC2, important for nutrient and growth-factor signalling. 
This region is the more conserved central section that 
may include several individual domains. Rictor can be inhibited 
in the short-term by rapamycin.
Length=104

 Score = 165 bits (421),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 52/104 (50%), Positives = 78/104 (75%), Gaps = 0/104 (0%)

Query  255  SGLTSSSPLFSREQMATTLSGGYFAMLGTLSGDPNGLAMMERWHMLNMFYHIIELRDRDD  314
            SG+T+  PLFS++++ TTLS GYF  +G LS   NGL ++E+W++  + YHI+EL+ RDD
Sbjct  1    SGITAGDPLFSKQRLETTLSRGYFLFIGVLSSSKNGLKLLEKWNIFTILYHIVELKSRDD  60

Query  315  LIQTLLGNLDYSQESHLRVLLSKALTTGSKDIRIFATKLLRKYA  358
            L++ +L +LDYS + H R++LSKALT+ S+ IR++ATK LR   
Sbjct  61   LLKLILSSLDYSLDGHPRIILSKALTSSSESIRLYATKHLRVLL  104


>CDD:464245 pfam14663, RasGEF_N_2, Rapamycin-insensitive companion of mTOR 
RasGEF_N domain.  Rictor appears to serve as a scaffolding 
protein that is important for maintaining mTORC2 integrity. 
The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr 
kinase that forms two functionally distinct complexes, 
mTROC1 and mTORC2, important for nutrient and growth-factor 
signalling. This region is the more conserved central section 
that may include several individual domains. Rictor can be 
inhibited in the short-term by rapamycin.
Length=107

 Score = 160 bits (407),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 71/103 (69%), Gaps = 0/103 (0%)

Query  373  ADWVVKLLVTQLYDPDVSVCQIAVKILEEACNHRDYLEYVVKCRPSLDHLGEIGAPLLLR  432
             +W ++LLVTQLYDP   V   AV +L EAC+ ++ LE +V  RPSLDHLGEIG+PLLLR
Sbjct  2    EEWGIELLVTQLYDPSPEVVAAAVDVLYEACDDKENLESLVSLRPSLDHLGEIGSPLLLR  61

Query  433  FLSTSVGYHYLDGLDYITQEMDDWFLGRNDAYVGLVEAALSRA  475
            FLST  G+ YL+ L ++  E+D WF  RN  YV  VE  L+ A
Sbjct  62   FLSTPSGFKYLNELGFVENELDKWFEERNLEYVLKVEEFLAEA  104


>CDD:464249 pfam14668, RICTOR_V, Rapamycin-insensitive companion of mTOR, 
domain 5.  Rictor appears to serve as a scaffolding protein 
that is important for maintaining mTORC2 integrity. The mammalian 
target of rapamycin (mTOR) is a conserved Ser/Thr kinase 
that forms two functionally distinct complexes, mTROC1 and 
mTORC2, important for nutrient and growth-factor signalling. 
These long eukaryotic proteins carry several well-conserved 
domains, and this is No.5.
Length=71

 Score = 119 bits (300),  Expect = 6e-33, Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 53/71 (75%), Gaps = 1/71 (1%)

Query  544  LKVKGCLWAVGNVGSMELGAPFLE-TDIVQQIVKIAESAEVLTMRGTAFFVLGLISRSRH  602
            LK+K  LWA+G++GS  LG   LE  DIV+ IVKIAE + VL++RGTAF+VLGLIS +  
Sbjct  1    LKLKAALWAIGHIGSSPLGIQLLEEYDIVEDIVKIAEESPVLSLRGTAFYVLGLISSTEE  60

Query  603  GLKVLREAGWD  613
            G ++L E GW+
Sbjct  61   GAEILDELGWE  71



Lambda      K        H        a         alpha
   0.321    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 819983240


Query= TCONS_00017981

Length=649
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464248 pfam14666, RICTOR_M, Rapamycin-insensitive companion o...  165     2e-49
CDD:464245 pfam14663, RasGEF_N_2, Rapamycin-insensitive companion...  160     2e-47
CDD:464249 pfam14668, RICTOR_V, Rapamycin-insensitive companion o...  119     6e-33


>CDD:464248 pfam14666, RICTOR_M, Rapamycin-insensitive companion of mTOR, 
middle domain.  Rictor appears to serve as a scaffolding protein 
that is important for maintaining mTORC2 integrity. The 
mammalian target of rapamycin (mTOR) is a conserved Ser/Thr 
kinase that forms two functionally distinct complexes, mTROC1 
and mTORC2, important for nutrient and growth-factor signalling. 
This region is the more conserved central section that 
may include several individual domains. Rictor can be inhibited 
in the short-term by rapamycin.
Length=104

 Score = 165 bits (421),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 52/104 (50%), Positives = 78/104 (75%), Gaps = 0/104 (0%)

Query  255  SGLTSSSPLFSREQMATTLSGGYFAMLGTLSGDPNGLAMMERWHMLNMFYHIIELRDRDD  314
            SG+T+  PLFS++++ TTLS GYF  +G LS   NGL ++E+W++  + YHI+EL+ RDD
Sbjct  1    SGITAGDPLFSKQRLETTLSRGYFLFIGVLSSSKNGLKLLEKWNIFTILYHIVELKSRDD  60

Query  315  LIQTLLGNLDYSQESHLRVLLSKALTTGSKDIRIFATKLLRKYA  358
            L++ +L +LDYS + H R++LSKALT+ S+ IR++ATK LR   
Sbjct  61   LLKLILSSLDYSLDGHPRIILSKALTSSSESIRLYATKHLRVLL  104


>CDD:464245 pfam14663, RasGEF_N_2, Rapamycin-insensitive companion of mTOR 
RasGEF_N domain.  Rictor appears to serve as a scaffolding 
protein that is important for maintaining mTORC2 integrity. 
The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr 
kinase that forms two functionally distinct complexes, 
mTROC1 and mTORC2, important for nutrient and growth-factor 
signalling. This region is the more conserved central section 
that may include several individual domains. Rictor can be 
inhibited in the short-term by rapamycin.
Length=107

 Score = 160 bits (407),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 71/103 (69%), Gaps = 0/103 (0%)

Query  373  ADWVVKLLVTQLYDPDVSVCQIAVKILEEACNHRDYLEYVVKCRPSLDHLGEIGAPLLLR  432
             +W ++LLVTQLYDP   V   AV +L EAC+ ++ LE +V  RPSLDHLGEIG+PLLLR
Sbjct  2    EEWGIELLVTQLYDPSPEVVAAAVDVLYEACDDKENLESLVSLRPSLDHLGEIGSPLLLR  61

Query  433  FLSTSVGYHYLDGLDYITQEMDDWFLGRNDAYVGLVEAALSRA  475
            FLST  G+ YL+ L ++  E+D WF  RN  YV  VE  L+ A
Sbjct  62   FLSTPSGFKYLNELGFVENELDKWFEERNLEYVLKVEEFLAEA  104


>CDD:464249 pfam14668, RICTOR_V, Rapamycin-insensitive companion of mTOR, 
domain 5.  Rictor appears to serve as a scaffolding protein 
that is important for maintaining mTORC2 integrity. The mammalian 
target of rapamycin (mTOR) is a conserved Ser/Thr kinase 
that forms two functionally distinct complexes, mTROC1 and 
mTORC2, important for nutrient and growth-factor signalling. 
These long eukaryotic proteins carry several well-conserved 
domains, and this is No.5.
Length=71

 Score = 119 bits (300),  Expect = 6e-33, Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 53/71 (75%), Gaps = 1/71 (1%)

Query  544  LKVKGCLWAVGNVGSMELGAPFLE-TDIVQQIVKIAESAEVLTMRGTAFFVLGLISRSRH  602
            LK+K  LWA+G++GS  LG   LE  DIV+ IVKIAE + VL++RGTAF+VLGLIS +  
Sbjct  1    LKLKAALWAIGHIGSSPLGIQLLEEYDIVEDIVKIAEESPVLSLRGTAFYVLGLISSTEE  60

Query  603  GLKVLREAGWD  613
            G ++L E GW+
Sbjct  61   GAEILDELGWE  71



Lambda      K        H        a         alpha
   0.321    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 819983240


Query= TCONS_00017982

Length=758
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464248 pfam14666, RICTOR_M, Rapamycin-insensitive companion o...  165     8e-49
CDD:464245 pfam14663, RasGEF_N_2, Rapamycin-insensitive companion...  161     2e-47
CDD:464249 pfam14668, RICTOR_V, Rapamycin-insensitive companion o...  120     3e-33


>CDD:464248 pfam14666, RICTOR_M, Rapamycin-insensitive companion of mTOR, 
middle domain.  Rictor appears to serve as a scaffolding protein 
that is important for maintaining mTORC2 integrity. The 
mammalian target of rapamycin (mTOR) is a conserved Ser/Thr 
kinase that forms two functionally distinct complexes, mTROC1 
and mTORC2, important for nutrient and growth-factor signalling. 
This region is the more conserved central section that 
may include several individual domains. Rictor can be inhibited 
in the short-term by rapamycin.
Length=104

 Score = 165 bits (420),  Expect = 8e-49, Method: Composition-based stats.
 Identities = 52/104 (50%), Positives = 78/104 (75%), Gaps = 0/104 (0%)

Query  255  SGLTSSSPLFSREQMATTLSGGYFAMLGTLSGDPNGLAMMERWHMLNMFYHIIELRDRDD  314
            SG+T+  PLFS++++ TTLS GYF  +G LS   NGL ++E+W++  + YHI+EL+ RDD
Sbjct  1    SGITAGDPLFSKQRLETTLSRGYFLFIGVLSSSKNGLKLLEKWNIFTILYHIVELKSRDD  60

Query  315  LIQTLLGNLDYSQESHLRVLLSKALTTGSKDIRIFATKLLRKYA  358
            L++ +L +LDYS + H R++LSKALT+ S+ IR++ATK LR   
Sbjct  61   LLKLILSSLDYSLDGHPRIILSKALTSSSESIRLYATKHLRVLL  104


>CDD:464245 pfam14663, RasGEF_N_2, Rapamycin-insensitive companion of mTOR 
RasGEF_N domain.  Rictor appears to serve as a scaffolding 
protein that is important for maintaining mTORC2 integrity. 
The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr 
kinase that forms two functionally distinct complexes, 
mTROC1 and mTORC2, important for nutrient and growth-factor 
signalling. This region is the more conserved central section 
that may include several individual domains. Rictor can be 
inhibited in the short-term by rapamycin.
Length=107

 Score = 161 bits (410),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 71/103 (69%), Gaps = 0/103 (0%)

Query  373  ADWVVKLLVTQLYDPDVSVCQIAVKILEEACNHRDYLEYVVKCRPSLDHLGEIGAPLLLR  432
             +W ++LLVTQLYDP   V   AV +L EAC+ ++ LE +V  RPSLDHLGEIG+PLLLR
Sbjct  2    EEWGIELLVTQLYDPSPEVVAAAVDVLYEACDDKENLESLVSLRPSLDHLGEIGSPLLLR  61

Query  433  FLSTSVGYHYLDGLDYITQEMDDWFLGRNDAYVGLVEAALSRA  475
            FLST  G+ YL+ L ++  E+D WF  RN  YV  VE  L+ A
Sbjct  62   FLSTPSGFKYLNELGFVENELDKWFEERNLEYVLKVEEFLAEA  104


>CDD:464249 pfam14668, RICTOR_V, Rapamycin-insensitive companion of mTOR, 
domain 5.  Rictor appears to serve as a scaffolding protein 
that is important for maintaining mTORC2 integrity. The mammalian 
target of rapamycin (mTOR) is a conserved Ser/Thr kinase 
that forms two functionally distinct complexes, mTROC1 and 
mTORC2, important for nutrient and growth-factor signalling. 
These long eukaryotic proteins carry several well-conserved 
domains, and this is No.5.
Length=71

 Score = 120 bits (303),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 53/71 (75%), Gaps = 1/71 (1%)

Query  544  LKVKGCLWAVGNVGSMELGAPFLE-TDIVQQIVKIAESAEVLTMRGTAFFVLGLISRSRH  602
            LK+K  LWA+G++GS  LG   LE  DIV+ IVKIAE + VL++RGTAF+VLGLIS +  
Sbjct  1    LKLKAALWAIGHIGSSPLGIQLLEEYDIVEDIVKIAEESPVLSLRGTAFYVLGLISSTEE  60

Query  603  GLKVLREAGWD  613
            G ++L E GW+
Sbjct  61   GAEILDELGWE  71



Lambda      K        H        a         alpha
   0.321    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 966220928


Query= TCONS_00011931

Length=1317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464246 pfam14664, RICTOR_N, Rapamycin-insensitive companion o...  509     2e-170
CDD:464248 pfam14666, RICTOR_M, Rapamycin-insensitive companion o...  165     2e-48 
CDD:464245 pfam14663, RasGEF_N_2, Rapamycin-insensitive companion...  163     2e-47 
CDD:464249 pfam14668, RICTOR_V, Rapamycin-insensitive companion o...  119     1e-32 


>CDD:464246 pfam14664, RICTOR_N, Rapamycin-insensitive companion of mTOR, 
N-term.  Rictor appears to serve as a scaffolding protein that 
is important for maintaining mTORC2 integrity. The mammalian 
target of rapamycin (mTOR) is a conserved Ser/Thr kinase 
that forms two functionally distinct complexes, mTROC1 and 
mTORC2, important for nutrient and growth-factor signalling. 
This region is the N-terminal conserved section that may include 
several individual domains. Rictor can be inhibited in 
the short-term by rapamycin.
Length=372

 Score = 509 bits (1314),  Expect = 2e-170, Method: Composition-based stats.
 Identities = 202/375 (54%), Positives = 271/375 (72%), Gaps = 14/375 (4%)

Query  253  ERANSLVELFRRHPTLKYDLAWSVFGLRVQVMLLSDSKEVVAAGYRLTRYAIADRNSLQI  312
            E+AN LV+L +RHPTLKYDL  S F LR+Q MLLS+SKEV AAGYR+ RY I+D  SLQ+
Sbjct  1    EKANDLVDLLKRHPTLKYDLVLSDFLLRIQPMLLSESKEVRAAGYRILRYLISDEESLQL  60

Query  313  IRSLHTDELVILSLVKESKASIEREQALKFVRAFLDVKDGVHEISRAVVRTIVSIAEHHE  372
            +R LH D  +I SL K++K  +EREQALK +RAFL++KDGV EISR VVR +V+IAEH +
Sbjct  61   LRKLHLDIFIIRSLSKDNKNEVEREQALKLIRAFLEIKDGVSEISRGVVRALVAIAEHED  120

Query  373  DRLRNISIMTLAEILVKDPELIAYAGGFATLHDALAEGTFGASESLIASFLHVLDTPHSR  432
            DRLR I + TL E+ + DPEL+   GG   L DAL EG+F  +ESL+ + L++LD+P +R
Sbjct  121  DRLRRICLETLCELALLDPELVVRCGGLRVLLDALLEGSFELAESLLGALLYLLDSPRTR  180

Query  433  KHLRGGCELEAVLAPFTDSLS----DSIHNGRLKSSAKAISAMLKTWPGLIILARHEAKP  488
            K+LR G +LE +L+PFTDSL        +  RL++SAKAIS++LK+WPGL+ L+ ++ +P
Sbjct  181  KYLRPGFDLEVLLSPFTDSLDANTKGDSNEERLQASAKAISSLLKSWPGLMYLSMNDFRP  240

Query  489  LQSLLESLHYPDPQARDLIMELLFDALRIKPPSWSSSFLAGRRLTTYGRVANLRSESDAK  548
            L+SL++SL  P  + R+ I++LLFD LRIKPPSW+SSFLA   LTTYGRVANL S S ++
Sbjct  241  LRSLVDSLRLPSLEVREAILDLLFDLLRIKPPSWTSSFLA---LTTYGRVANLDSWSLSE  297

Query  549  PVRAFY-------DSNDDRFDLTAHFSTLILATLIDAGLSQSLSDLIEEETDQSLRRKAT  601
               A         +S+  R +L  H+  L+L   I+AGL ++L ++IEE +D SL RKAT
Sbjct  298  GFVAAEFKSILPSESSFSRENLVNHYLALLLLVFIEAGLLEALVEVIEESSDSSLSRKAT  357

Query  602  LLLTEVLKLAHHSLP  616
            LLL E+L LA+  LP
Sbjct  358  LLLGELLHLANRLLP  372


>CDD:464248 pfam14666, RICTOR_M, Rapamycin-insensitive companion of mTOR, 
middle domain.  Rictor appears to serve as a scaffolding protein 
that is important for maintaining mTORC2 integrity. The 
mammalian target of rapamycin (mTOR) is a conserved Ser/Thr 
kinase that forms two functionally distinct complexes, mTROC1 
and mTORC2, important for nutrient and growth-factor signalling. 
This region is the more conserved central section that 
may include several individual domains. Rictor can be inhibited 
in the short-term by rapamycin.
Length=104

 Score = 165 bits (421),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 52/104 (50%), Positives = 78/104 (75%), Gaps = 0/104 (0%)

Query  814  SGLTSSSPLFSREQMATTLSGGYFAMLGTLSGDPNGLAMMERWHMLNMFYHIIELRDRDD  873
            SG+T+  PLFS++++ TTLS GYF  +G LS   NGL ++E+W++  + YHI+EL+ RDD
Sbjct  1    SGITAGDPLFSKQRLETTLSRGYFLFIGVLSSSKNGLKLLEKWNIFTILYHIVELKSRDD  60

Query  874  LIQTLLGNLDYSQESHLRVLLSKALTTGSKDIRIFATKLLRKYA  917
            L++ +L +LDYS + H R++LSKALT+ S+ IR++ATK LR   
Sbjct  61   LLKLILSSLDYSLDGHPRIILSKALTSSSESIRLYATKHLRVLL  104


>CDD:464245 pfam14663, RasGEF_N_2, Rapamycin-insensitive companion of mTOR 
RasGEF_N domain.  Rictor appears to serve as a scaffolding 
protein that is important for maintaining mTORC2 integrity. 
The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr 
kinase that forms two functionally distinct complexes, 
mTROC1 and mTORC2, important for nutrient and growth-factor 
signalling. This region is the more conserved central section 
that may include several individual domains. Rictor can be 
inhibited in the short-term by rapamycin.
Length=107

 Score = 163 bits (414),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 71/103 (69%), Gaps = 0/103 (0%)

Query  932   ADWVVKLLVTQLYDPDVSVCQIAVKILEEACNHRDYLEYVVKCRPSLDHLGEIGAPLLLR  991
              +W ++LLVTQLYDP   V   AV +L EAC+ ++ LE +V  RPSLDHLGEIG+PLLLR
Sbjct  2     EEWGIELLVTQLYDPSPEVVAAAVDVLYEACDDKENLESLVSLRPSLDHLGEIGSPLLLR  61

Query  992   FLSTSVGYHYLDGLDYITQEMDDWFLGRNDAYVGLVEAALSRA  1034
             FLST  G+ YL+ L ++  E+D WF  RN  YV  VE  L+ A
Sbjct  62    FLSTPSGFKYLNELGFVENELDKWFEERNLEYVLKVEEFLAEA  104


>CDD:464249 pfam14668, RICTOR_V, Rapamycin-insensitive companion of mTOR, 
domain 5.  Rictor appears to serve as a scaffolding protein 
that is important for maintaining mTORC2 integrity. The mammalian 
target of rapamycin (mTOR) is a conserved Ser/Thr kinase 
that forms two functionally distinct complexes, mTROC1 and 
mTORC2, important for nutrient and growth-factor signalling. 
These long eukaryotic proteins carry several well-conserved 
domains, and this is No.5.
Length=71

 Score = 119 bits (301),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 53/71 (75%), Gaps = 1/71 (1%)

Query  1103  LKVKGCLWAVGNVGSMELGAPFLE-TDIVQQIVKIAESAEVLTMRGTAFFVLGLISRSRH  1161
             LK+K  LWA+G++GS  LG   LE  DIV+ IVKIAE + VL++RGTAF+VLGLIS +  
Sbjct  1     LKLKAALWAIGHIGSSPLGIQLLEEYDIVEDIVKIAEESPVLSLRGTAFYVLGLISSTEE  60

Query  1162  GLKVLREAGWD  1172
             G ++L E GW+
Sbjct  61    GAEILDELGWE  71



Lambda      K        H        a         alpha
   0.318    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1678075400


Query= TCONS_00017983

Length=758
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464248 pfam14666, RICTOR_M, Rapamycin-insensitive companion o...  165     7e-49
CDD:464245 pfam14663, RasGEF_N_2, Rapamycin-insensitive companion...  160     4e-47
CDD:464249 pfam14668, RICTOR_V, Rapamycin-insensitive companion o...  120     2e-33


>CDD:464248 pfam14666, RICTOR_M, Rapamycin-insensitive companion of mTOR, 
middle domain.  Rictor appears to serve as a scaffolding protein 
that is important for maintaining mTORC2 integrity. The 
mammalian target of rapamycin (mTOR) is a conserved Ser/Thr 
kinase that forms two functionally distinct complexes, mTROC1 
and mTORC2, important for nutrient and growth-factor signalling. 
This region is the more conserved central section that 
may include several individual domains. Rictor can be inhibited 
in the short-term by rapamycin.
Length=104

 Score = 165 bits (420),  Expect = 7e-49, Method: Composition-based stats.
 Identities = 52/104 (50%), Positives = 78/104 (75%), Gaps = 0/104 (0%)

Query  255  SGLTSSSPLFSREQMATTLSGGYFAMLGTLSGDPNGLAMMERWHMLNMFYHIIELRDRDD  314
            SG+T+  PLFS++++ TTLS GYF  +G LS   NGL ++E+W++  + YHI+EL+ RDD
Sbjct  1    SGITAGDPLFSKQRLETTLSRGYFLFIGVLSSSKNGLKLLEKWNIFTILYHIVELKSRDD  60

Query  315  LIQTLLGNLDYSQESHLRVLLSKALTTGSKDIRIFATKLLRKYA  358
            L++ +L +LDYS + H R++LSKALT+ S+ IR++ATK LR   
Sbjct  61   LLKLILSSLDYSLDGHPRIILSKALTSSSESIRLYATKHLRVLL  104


>CDD:464245 pfam14663, RasGEF_N_2, Rapamycin-insensitive companion of mTOR 
RasGEF_N domain.  Rictor appears to serve as a scaffolding 
protein that is important for maintaining mTORC2 integrity. 
The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr 
kinase that forms two functionally distinct complexes, 
mTROC1 and mTORC2, important for nutrient and growth-factor 
signalling. This region is the more conserved central section 
that may include several individual domains. Rictor can be 
inhibited in the short-term by rapamycin.
Length=107

 Score = 160 bits (408),  Expect = 4e-47, Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 71/103 (69%), Gaps = 0/103 (0%)

Query  373  ADWVVKLLVTQLYDPDVSVCQIAVKILEEACNHRDYLEYVVKCRPSLDHLGEIGAPLLLR  432
             +W ++LLVTQLYDP   V   AV +L EAC+ ++ LE +V  RPSLDHLGEIG+PLLLR
Sbjct  2    EEWGIELLVTQLYDPSPEVVAAAVDVLYEACDDKENLESLVSLRPSLDHLGEIGSPLLLR  61

Query  433  FLSTSVGYHYLDGLDYITQEMDDWFLGRNDAYVGLVEAALSRA  475
            FLST  G+ YL+ L ++  E+D WF  RN  YV  VE  L+ A
Sbjct  62   FLSTPSGFKYLNELGFVENELDKWFEERNLEYVLKVEEFLAEA  104


>CDD:464249 pfam14668, RICTOR_V, Rapamycin-insensitive companion of mTOR, 
domain 5.  Rictor appears to serve as a scaffolding protein 
that is important for maintaining mTORC2 integrity. The mammalian 
target of rapamycin (mTOR) is a conserved Ser/Thr kinase 
that forms two functionally distinct complexes, mTROC1 and 
mTORC2, important for nutrient and growth-factor signalling. 
These long eukaryotic proteins carry several well-conserved 
domains, and this is No.5.
Length=71

 Score = 120 bits (304),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 53/71 (75%), Gaps = 1/71 (1%)

Query  544  LKVKGCLWAVGNVGSMELGAPFLE-TDIVQQIVKIAESAEVLTMRGTAFFVLGLISRSRH  602
            LK+K  LWA+G++GS  LG   LE  DIV+ IVKIAE + VL++RGTAF+VLGLIS +  
Sbjct  1    LKLKAALWAIGHIGSSPLGIQLLEEYDIVEDIVKIAEESPVLSLRGTAFYVLGLISSTEE  60

Query  603  GLKVLREAGWD  613
            G ++L E GW+
Sbjct  61   GAEILDELGWE  71



Lambda      K        H        a         alpha
   0.320    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 966220928


Query= TCONS_00011932

Length=758
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464248 pfam14666, RICTOR_M, Rapamycin-insensitive companion o...  165     7e-49
CDD:464245 pfam14663, RasGEF_N_2, Rapamycin-insensitive companion...  160     4e-47
CDD:464249 pfam14668, RICTOR_V, Rapamycin-insensitive companion o...  120     2e-33


>CDD:464248 pfam14666, RICTOR_M, Rapamycin-insensitive companion of mTOR, 
middle domain.  Rictor appears to serve as a scaffolding protein 
that is important for maintaining mTORC2 integrity. The 
mammalian target of rapamycin (mTOR) is a conserved Ser/Thr 
kinase that forms two functionally distinct complexes, mTROC1 
and mTORC2, important for nutrient and growth-factor signalling. 
This region is the more conserved central section that 
may include several individual domains. Rictor can be inhibited 
in the short-term by rapamycin.
Length=104

 Score = 165 bits (420),  Expect = 7e-49, Method: Composition-based stats.
 Identities = 52/104 (50%), Positives = 78/104 (75%), Gaps = 0/104 (0%)

Query  255  SGLTSSSPLFSREQMATTLSGGYFAMLGTLSGDPNGLAMMERWHMLNMFYHIIELRDRDD  314
            SG+T+  PLFS++++ TTLS GYF  +G LS   NGL ++E+W++  + YHI+EL+ RDD
Sbjct  1    SGITAGDPLFSKQRLETTLSRGYFLFIGVLSSSKNGLKLLEKWNIFTILYHIVELKSRDD  60

Query  315  LIQTLLGNLDYSQESHLRVLLSKALTTGSKDIRIFATKLLRKYA  358
            L++ +L +LDYS + H R++LSKALT+ S+ IR++ATK LR   
Sbjct  61   LLKLILSSLDYSLDGHPRIILSKALTSSSESIRLYATKHLRVLL  104


>CDD:464245 pfam14663, RasGEF_N_2, Rapamycin-insensitive companion of mTOR 
RasGEF_N domain.  Rictor appears to serve as a scaffolding 
protein that is important for maintaining mTORC2 integrity. 
The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr 
kinase that forms two functionally distinct complexes, 
mTROC1 and mTORC2, important for nutrient and growth-factor 
signalling. This region is the more conserved central section 
that may include several individual domains. Rictor can be 
inhibited in the short-term by rapamycin.
Length=107

 Score = 160 bits (408),  Expect = 4e-47, Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 71/103 (69%), Gaps = 0/103 (0%)

Query  373  ADWVVKLLVTQLYDPDVSVCQIAVKILEEACNHRDYLEYVVKCRPSLDHLGEIGAPLLLR  432
             +W ++LLVTQLYDP   V   AV +L EAC+ ++ LE +V  RPSLDHLGEIG+PLLLR
Sbjct  2    EEWGIELLVTQLYDPSPEVVAAAVDVLYEACDDKENLESLVSLRPSLDHLGEIGSPLLLR  61

Query  433  FLSTSVGYHYLDGLDYITQEMDDWFLGRNDAYVGLVEAALSRA  475
            FLST  G+ YL+ L ++  E+D WF  RN  YV  VE  L+ A
Sbjct  62   FLSTPSGFKYLNELGFVENELDKWFEERNLEYVLKVEEFLAEA  104


>CDD:464249 pfam14668, RICTOR_V, Rapamycin-insensitive companion of mTOR, 
domain 5.  Rictor appears to serve as a scaffolding protein 
that is important for maintaining mTORC2 integrity. The mammalian 
target of rapamycin (mTOR) is a conserved Ser/Thr kinase 
that forms two functionally distinct complexes, mTROC1 and 
mTORC2, important for nutrient and growth-factor signalling. 
These long eukaryotic proteins carry several well-conserved 
domains, and this is No.5.
Length=71

 Score = 120 bits (304),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 53/71 (75%), Gaps = 1/71 (1%)

Query  544  LKVKGCLWAVGNVGSMELGAPFLE-TDIVQQIVKIAESAEVLTMRGTAFFVLGLISRSRH  602
            LK+K  LWA+G++GS  LG   LE  DIV+ IVKIAE + VL++RGTAF+VLGLIS +  
Sbjct  1    LKLKAALWAIGHIGSSPLGIQLLEEYDIVEDIVKIAEESPVLSLRGTAFYVLGLISSTEE  60

Query  603  GLKVLREAGWD  613
            G ++L E GW+
Sbjct  61   GAEILDELGWE  71



Lambda      K        H        a         alpha
   0.320    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 966220928


Query= TCONS_00017984

Length=1306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464246 pfam14664, RICTOR_N, Rapamycin-insensitive companion o...  510     8e-171
CDD:464248 pfam14666, RICTOR_M, Rapamycin-insensitive companion o...  165     2e-48 
CDD:464245 pfam14663, RasGEF_N_2, Rapamycin-insensitive companion...  163     1e-47 
CDD:464249 pfam14668, RICTOR_V, Rapamycin-insensitive companion o...  119     1e-32 


>CDD:464246 pfam14664, RICTOR_N, Rapamycin-insensitive companion of mTOR, 
N-term.  Rictor appears to serve as a scaffolding protein that 
is important for maintaining mTORC2 integrity. The mammalian 
target of rapamycin (mTOR) is a conserved Ser/Thr kinase 
that forms two functionally distinct complexes, mTROC1 and 
mTORC2, important for nutrient and growth-factor signalling. 
This region is the N-terminal conserved section that may include 
several individual domains. Rictor can be inhibited in 
the short-term by rapamycin.
Length=372

 Score = 510 bits (1315),  Expect = 8e-171, Method: Composition-based stats.
 Identities = 202/375 (54%), Positives = 271/375 (72%), Gaps = 14/375 (4%)

Query  253  ERANSLVELFRRHPTLKYDLAWSVFGLRVQVMLLSDSKEVVAAGYRLTRYAIADRNSLQI  312
            E+AN LV+L +RHPTLKYDL  S F LR+Q MLLS+SKEV AAGYR+ RY I+D  SLQ+
Sbjct  1    EKANDLVDLLKRHPTLKYDLVLSDFLLRIQPMLLSESKEVRAAGYRILRYLISDEESLQL  60

Query  313  IRSLHTDELVILSLVKESKASIEREQALKFVRAFLDVKDGVHEISRAVVRTIVSIAEHHE  372
            +R LH D  +I SL K++K  +EREQALK +RAFL++KDGV EISR VVR +V+IAEH +
Sbjct  61   LRKLHLDIFIIRSLSKDNKNEVEREQALKLIRAFLEIKDGVSEISRGVVRALVAIAEHED  120

Query  373  DRLRNISIMTLAEILVKDPELIAYAGGFATLHDALAEGTFGASESLIASFLHVLDTPHSR  432
            DRLR I + TL E+ + DPEL+   GG   L DAL EG+F  +ESL+ + L++LD+P +R
Sbjct  121  DRLRRICLETLCELALLDPELVVRCGGLRVLLDALLEGSFELAESLLGALLYLLDSPRTR  180

Query  433  KHLRGGCELEAVLAPFTDSLS----DSIHNGRLKSSAKAISAMLKTWPGLIILARHEAKP  488
            K+LR G +LE +L+PFTDSL        +  RL++SAKAIS++LK+WPGL+ L+ ++ +P
Sbjct  181  KYLRPGFDLEVLLSPFTDSLDANTKGDSNEERLQASAKAISSLLKSWPGLMYLSMNDFRP  240

Query  489  LQSLLESLHYPDPQARDLIMELLFDALRIKPPSWSSSFLAGRRLTTYGRVANLRSESDAK  548
            L+SL++SL  P  + R+ I++LLFD LRIKPPSW+SSFLA   LTTYGRVANL S S ++
Sbjct  241  LRSLVDSLRLPSLEVREAILDLLFDLLRIKPPSWTSSFLA---LTTYGRVANLDSWSLSE  297

Query  549  PVRAFY-------DSNDDRFDLTAHFSTLILATLIDAGLSQSLSDLIEEETDQSLRRKAT  601
               A         +S+  R +L  H+  L+L   I+AGL ++L ++IEE +D SL RKAT
Sbjct  298  GFVAAEFKSILPSESSFSRENLVNHYLALLLLVFIEAGLLEALVEVIEESSDSSLSRKAT  357

Query  602  LLLTEVLKLAHHSLP  616
            LLL E+L LA+  LP
Sbjct  358  LLLGELLHLANRLLP  372


>CDD:464248 pfam14666, RICTOR_M, Rapamycin-insensitive companion of mTOR, 
middle domain.  Rictor appears to serve as a scaffolding protein 
that is important for maintaining mTORC2 integrity. The 
mammalian target of rapamycin (mTOR) is a conserved Ser/Thr 
kinase that forms two functionally distinct complexes, mTROC1 
and mTORC2, important for nutrient and growth-factor signalling. 
This region is the more conserved central section that 
may include several individual domains. Rictor can be inhibited 
in the short-term by rapamycin.
Length=104

 Score = 165 bits (421),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 52/104 (50%), Positives = 78/104 (75%), Gaps = 0/104 (0%)

Query  814  SGLTSSSPLFSREQMATTLSGGYFAMLGTLSGDPNGLAMMERWHMLNMFYHIIELRDRDD  873
            SG+T+  PLFS++++ TTLS GYF  +G LS   NGL ++E+W++  + YHI+EL+ RDD
Sbjct  1    SGITAGDPLFSKQRLETTLSRGYFLFIGVLSSSKNGLKLLEKWNIFTILYHIVELKSRDD  60

Query  874  LIQTLLGNLDYSQESHLRVLLSKALTTGSKDIRIFATKLLRKYA  917
            L++ +L +LDYS + H R++LSKALT+ S+ IR++ATK LR   
Sbjct  61   LLKLILSSLDYSLDGHPRIILSKALTSSSESIRLYATKHLRVLL  104


>CDD:464245 pfam14663, RasGEF_N_2, Rapamycin-insensitive companion of mTOR 
RasGEF_N domain.  Rictor appears to serve as a scaffolding 
protein that is important for maintaining mTORC2 integrity. 
The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr 
kinase that forms two functionally distinct complexes, 
mTROC1 and mTORC2, important for nutrient and growth-factor 
signalling. This region is the more conserved central section 
that may include several individual domains. Rictor can be 
inhibited in the short-term by rapamycin.
Length=107

 Score = 163 bits (415),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 71/103 (69%), Gaps = 0/103 (0%)

Query  932   ADWVVKLLVTQLYDPDVSVCQIAVKILEEACNHRDYLEYVVKCRPSLDHLGEIGAPLLLR  991
              +W ++LLVTQLYDP   V   AV +L EAC+ ++ LE +V  RPSLDHLGEIG+PLLLR
Sbjct  2     EEWGIELLVTQLYDPSPEVVAAAVDVLYEACDDKENLESLVSLRPSLDHLGEIGSPLLLR  61

Query  992   FLSTSVGYHYLDGLDYITQEMDDWFLGRNDAYVGLVEAALSRA  1034
             FLST  G+ YL+ L ++  E+D WF  RN  YV  VE  L+ A
Sbjct  62    FLSTPSGFKYLNELGFVENELDKWFEERNLEYVLKVEEFLAEA  104


>CDD:464249 pfam14668, RICTOR_V, Rapamycin-insensitive companion of mTOR, 
domain 5.  Rictor appears to serve as a scaffolding protein 
that is important for maintaining mTORC2 integrity. The mammalian 
target of rapamycin (mTOR) is a conserved Ser/Thr kinase 
that forms two functionally distinct complexes, mTROC1 and 
mTORC2, important for nutrient and growth-factor signalling. 
These long eukaryotic proteins carry several well-conserved 
domains, and this is No.5.
Length=71

 Score = 119 bits (301),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 53/71 (75%), Gaps = 1/71 (1%)

Query  1103  LKVKGCLWAVGNVGSMELGAPFLE-TDIVQQIVKIAESAEVLTMRGTAFFVLGLISRSRH  1161
             LK+K  LWA+G++GS  LG   LE  DIV+ IVKIAE + VL++RGTAF+VLGLIS +  
Sbjct  1     LKLKAALWAIGHIGSSPLGIQLLEEYDIVEDIVKIAEESPVLSLRGTAFYVLGLISSTEE  60

Query  1162  GLKVLREAGWD  1172
             G ++L E GW+
Sbjct  61    GAEILDELGWE  71



Lambda      K        H        a         alpha
   0.318    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1662932800


Query= TCONS_00011935

Length=626
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426647 pfam02190, LON_substr_bdg, ATP-dependent protease La (...  110     2e-28
CDD:404756 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING f...  56.3    4e-11


>CDD:426647 pfam02190, LON_substr_bdg, ATP-dependent protease La (LON) substrate-binding 
domain.  This domain has been shown to be part 
of the PUA superfamily. This domain represents a general 
protein and polypeptide interaction domain for the ATP-dependent 
serine peptidase, LON, Peptidase_S16, pfam05362. ATP-dependent 
Lon proteases are conserved in all living organisms 
and catalyze rapid turnover of short-lived regulatory proteins 
and many damaged or denatured proteins.
Length=195

 Score = 110 bits (277),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 41/220 (19%), Positives = 84/220 (38%), Gaps = 35/220 (16%)

Query  309  VLPLFV--NSLSFPSMPTFLRIFEPRYCLMIRRVMESRERKFGMVMYNRLGRPQGQLGAT  366
             LPL    N++ FP M   L +  PR    I   +  +++ +G+++ ++      +    
Sbjct  1    ELPLLPLRNTVLFPGMVLPLFVGRPRSIAAIEAALN-KDKLYGVLLVSQKDAEDEEPTPD  59

Query  367  QFMQYGVVLRVERFEPLPGGRSLIFAMGVSRFKVIKSHI-VDGYHVGQIQRVDDIPIAEE  425
               + G V ++ +   LP G   +   G+ R ++++     + Y   +++ + +      
Sbjct  60   DLYEVGTVAKIVQILKLPDGTYKVLVEGLERVRIVELVKKEEPYLRAEVEDLPEDSDELS  119

Query  426  ENLESWETSTIPHRSTEARPSQQPLDSMSTQELFQLGLDFVRKRRGEGARWLHPRVLMAY  485
            E L++                         +EL +      R  +      L P  L+  
Sbjct  120  EALKA-----------------------LVKELIEK---LRRLLKL-----LLPLELLLK  148

Query  486  GDIPSDPAQFPWWLACVFPVSEEEKYALLSATSVRERLKI  525
                 +P +    +A + P+S EEK  LL    V+ERL+ 
Sbjct  149  IKDIENPGRLADLVAAILPLSPEEKQELLETLDVKERLEK  188


>CDD:404756 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger). 
 
Length=40

 Score = 56.3 bits (136),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 17/39 (44%), Positives = 25/39 (64%), Gaps = 1/39 (3%)

Query  222  CQVCYSLITDPL-TTPCGHTFCRGCVVTILDHSDLCPIC  259
            C +C  ++ DP  TTPCGH FC+ C++  L   + CP+C
Sbjct  2    CPICMDMLKDPSTTTPCGHVFCQDCILRALRAGNECPLC  40



Lambda      K        H        a         alpha
   0.321    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 786063070


Query= TCONS_00017985

Length=378


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0770    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00017986

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00017987

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00011936

Length=336


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00017988

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00011938

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00011939

Length=342


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00011940

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00011941

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00017989

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00017990

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00017991

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00011944

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00011945

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00017992

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00017993

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00017994

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00011947

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00011946

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00017995

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00011948

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00011949

Length=253


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00017996

Length=253


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00017997

Length=253


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00017998

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00017999

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00011951

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00011954

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00011953

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00018000

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.141    0.544    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00011956

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              169     5e-49


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 169 bits (431),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 155/335 (46%), Gaps = 12/335 (4%)

Query  6    ASISNPDYIPTSWQTFLLTTLIMIIHSFISSMPTKWVARFNSYGSTFNMMALVVVLIAIP  65
             S   PD +PT+W T+ +   I+II + I+    +  A+  +      ++  ++++I + 
Sbjct  104  LSALGPDLVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILG  163

Query  66   AGTKNEPKFNPSKEVWGTITNGTEFPDGVAVLMTFVGVIWTMSGYDSPFHLSEECSNANV  125
              T +   FN     W T     +   GV     F+GV+W+ +G++S  ++SEE    NV
Sbjct  164  LVTADGGGFNLLSGEWHTFF--PDGWPGV--FAGFLGVLWSFTGFESAANVSEEVKKRNV  219

Query  126  ASPRAIVMTSGVGGLMGWFLQLVVAYTVLDIEAVIDSDLGQPWASYLLQVMPRKTAMAIL  185
              P+AI +   + G++   + +     V D E  + S LGQ  A     V  +  A+ ++
Sbjct  220  --PKAIFIGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVV  277

Query  186  GLTIVCGFSMGQGCMVAASRVTYAYARDDCFPLSRIWKKVNERTKTPVNAVILNTVLGIL  245
             L  +         +V ASR+ YA ARD   P SR + KVN +  +P+ A+IL  +L ++
Sbjct  278  ILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVN-KFGSPIRAIILTAILSLI  336

Query  246  MCLLILAGDVAIGALFSIGAIAQFVAFTIPISIRVFFVGNRFQKGPWHLGPFGPAIGGLG  305
            + LL L    A  AL S+ A    +++ +PI   +     R ++      P    +   G
Sbjct  337  LLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLI---LRKKRPDLGRIPGRWPVAIFG  393

Query  306  VLFVLLMVPILCLPSVRGADLIPDQMNWTCLVWGA  340
            +LF L ++  L  P V  A      +N+  ++  A
Sbjct  394  ILFSLFLIVALFFPPVGPA--TGSSLNYAIILIVA  426



Lambda      K        H        a         alpha
   0.325    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00018001

Length=617
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395038 pfam00085, Thioredoxin, Thioredoxin. Thioredoxins are ...  97.7    6e-25


>CDD:395038 pfam00085, Thioredoxin, Thioredoxin.  Thioredoxins are small 
enzymes that participate in redox reactions, via the reversible 
oxidation of an active centre disulfide bond. Some members 
with only the active site are not separated from the noise.
Length=103

 Score = 97.7 bits (244),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 36/101 (36%), Positives = 54/101 (53%), Gaps = 1/101 (1%)

Query  135  VPLTAESFQKLVTTTRDPWFVKFYAPWCHHCQALAPVWQGMAREMQHVLNVGEVNCDAEP  194
            V LT  +F ++V  +  P  V FYAPWC  C+ LAP ++ +A+E +  +   +V+ D  P
Sbjct  3    VVLTDANFDEVVQKSSKPVLVDFYAPWCGPCKMLAPEYEELAQEYKGNVVFAKVDVDENP  62

Query  195  RLCKDARVNAYPTMYFFRGGERV-EYTGLRGLGDLVNYAKK  234
             L     V  YPT+ FF+ G+ V +Y G R    L  + K 
Sbjct  63   DLASKYGVRGYPTLIFFKNGQPVDDYVGARPKDALAAFLKA  103



Lambda      K        H        a         alpha
   0.319    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784574700


Query= TCONS_00011958

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conser...  97.2    1e-27


>CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conserved region. 
 Family of eukaryotic NADH-ubiquinone oxidoreductase subunits 
(EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron 
transport chain initially identified in Neurospora crassa 
as a 29.9 kDa protein. The conserved region is found at the 
N-terminus of the member proteins.
Length=67

 Score = 97.2 bits (243),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 6/73 (8%)

Query  27  GLVTHPSPRPTLIHLYRTTLENLKRFPESSVYRQSTEALTRHRLQIVESVKPPGYDAWLE  86
           GL  HP+PRP LI+LY  TL+ LK+ PE SVYRQSTEALT+HRL IVE       +  +E
Sbjct  1   GLAVHPNPRPALIYLYNKTLDKLKKIPEDSVYRQSTEALTKHRLAIVEE------EEDVE  54

Query  87  RVKKAVSAEPERF  99
           +++K +       
Sbjct  55  KIEKKIGCGQIEE  67



Lambda      K        H        a         alpha
   0.311    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00011957

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conser...  94.1    5e-26


>CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conserved region. 
 Family of eukaryotic NADH-ubiquinone oxidoreductase subunits 
(EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron 
transport chain initially identified in Neurospora crassa 
as a 29.9 kDa protein. The conserved region is found at the 
N-terminus of the member proteins.
Length=67

 Score = 94.1 bits (235),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 6/73 (8%)

Query  27  GLVTHPSPRPTLIHLYRTTLENLKRFPESSVYRQSTEALTRHRLQIVESVKPPGYDAWLE  86
           GL  HP+PRP LI+LY  TL+ LK+ PE SVYRQSTEALT+HRL IVE       +  +E
Sbjct  1   GLAVHPNPRPALIYLYNKTLDKLKKIPEDSVYRQSTEALTKHRLAIVEE------EEDVE  54

Query  87  RVKKAVSAEPERF  99
           +++K +       
Sbjct  55  KIEKKIGCGQIEE  67



Lambda      K        H        a         alpha
   0.312    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00018002

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conser...  95.3    6e-27


>CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conserved region. 
 Family of eukaryotic NADH-ubiquinone oxidoreductase subunits 
(EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron 
transport chain initially identified in Neurospora crassa 
as a 29.9 kDa protein. The conserved region is found at the 
N-terminus of the member proteins.
Length=67

 Score = 95.3 bits (238),  Expect = 6e-27, Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 6/73 (8%)

Query  27  GLVTHPSPRPTLIHLYRTTLENLKRFPESSVYRQSTEALTRHRLQIVESVKPPGYDAWLE  86
           GL  HP+PRP LI+LY  TL+ LK+ PE SVYRQSTEALT+HRL IVE       +  +E
Sbjct  1   GLAVHPNPRPALIYLYNKTLDKLKKIPEDSVYRQSTEALTKHRLAIVEE------EEDVE  54

Query  87  RVKKAVSAEPERF  99
           +++K +       
Sbjct  55  KIEKKIGCGQIEE  67



Lambda      K        H        a         alpha
   0.312    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00018003

Length=242
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conser...  94.9    4e-26


>CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conserved region. 
 Family of eukaryotic NADH-ubiquinone oxidoreductase subunits 
(EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron 
transport chain initially identified in Neurospora crassa 
as a 29.9 kDa protein. The conserved region is found at the 
N-terminus of the member proteins.
Length=67

 Score = 94.9 bits (237),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 6/73 (8%)

Query  27  GLVTHPSPRPTLIHLYRTTLENLKRFPESSVYRQSTEALTRHRLQIVESVKPPGYDAWLE  86
           GL  HP+PRP LI+LY  TL+ LK+ PE SVYRQSTEALT+HRL IVE       +  +E
Sbjct  1   GLAVHPNPRPALIYLYNKTLDKLKKIPEDSVYRQSTEALTKHRLAIVEE------EEDVE  54

Query  87  RVKKAVSAEPERF  99
           +++K +       
Sbjct  55  KIEKKIGCGQIEE  67



Lambda      K        H        a         alpha
   0.312    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00018004

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conser...  94.1    5e-26


>CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conserved region. 
 Family of eukaryotic NADH-ubiquinone oxidoreductase subunits 
(EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron 
transport chain initially identified in Neurospora crassa 
as a 29.9 kDa protein. The conserved region is found at the 
N-terminus of the member proteins.
Length=67

 Score = 94.1 bits (235),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 6/73 (8%)

Query  27  GLVTHPSPRPTLIHLYRTTLENLKRFPESSVYRQSTEALTRHRLQIVESVKPPGYDAWLE  86
           GL  HP+PRP LI+LY  TL+ LK+ PE SVYRQSTEALT+HRL IVE       +  +E
Sbjct  1   GLAVHPNPRPALIYLYNKTLDKLKKIPEDSVYRQSTEALTKHRLAIVEE------EEDVE  54

Query  87  RVKKAVSAEPERF  99
           +++K +       
Sbjct  55  KIEKKIGCGQIEE  67



Lambda      K        H        a         alpha
   0.312    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00011960

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conser...  94.1    7e-26


>CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conserved region. 
 Family of eukaryotic NADH-ubiquinone oxidoreductase subunits 
(EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron 
transport chain initially identified in Neurospora crassa 
as a 29.9 kDa protein. The conserved region is found at the 
N-terminus of the member proteins.
Length=67

 Score = 94.1 bits (235),  Expect = 7e-26, Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 6/73 (8%)

Query  27  GLVTHPSPRPTLIHLYRTTLENLKRFPESSVYRQSTEALTRHRLQIVESVKPPGYDAWLE  86
           GL  HP+PRP LI+LY  TL+ LK+ PE SVYRQSTEALT+HRL IVE       +  +E
Sbjct  1   GLAVHPNPRPALIYLYNKTLDKLKKIPEDSVYRQSTEALTKHRLAIVEE------EEDVE  54

Query  87  RVKKAVSAEPERF  99
           +++K +       
Sbjct  55  KIEKKIGCGQIEE  67



Lambda      K        H        a         alpha
   0.312    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00018005

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conser...  94.1    5e-26


>CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conserved region. 
 Family of eukaryotic NADH-ubiquinone oxidoreductase subunits 
(EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron 
transport chain initially identified in Neurospora crassa 
as a 29.9 kDa protein. The conserved region is found at the 
N-terminus of the member proteins.
Length=67

 Score = 94.1 bits (235),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 6/73 (8%)

Query  27  GLVTHPSPRPTLIHLYRTTLENLKRFPESSVYRQSTEALTRHRLQIVESVKPPGYDAWLE  86
           GL  HP+PRP LI+LY  TL+ LK+ PE SVYRQSTEALT+HRL IVE       +  +E
Sbjct  1   GLAVHPNPRPALIYLYNKTLDKLKKIPEDSVYRQSTEALTKHRLAIVEE------EEDVE  54

Query  87  RVKKAVSAEPERF  99
           +++K +       
Sbjct  55  KIEKKIGCGQIEE  67



Lambda      K        H        a         alpha
   0.312    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00011962

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conser...  96.8    2e-27


>CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conserved region. 
 Family of eukaryotic NADH-ubiquinone oxidoreductase subunits 
(EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron 
transport chain initially identified in Neurospora crassa 
as a 29.9 kDa protein. The conserved region is found at the 
N-terminus of the member proteins.
Length=67

 Score = 96.8 bits (242),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 6/73 (8%)

Query  27  GLVTHPSPRPTLIHLYRTTLENLKRFPESSVYRQSTEALTRHRLQIVESVKPPGYDAWLE  86
           GL  HP+PRP LI+LY  TL+ LK+ PE SVYRQSTEALT+HRL IVE       +  +E
Sbjct  1   GLAVHPNPRPALIYLYNKTLDKLKKIPEDSVYRQSTEALTKHRLAIVEE------EEDVE  54

Query  87  RVKKAVSAEPERF  99
           +++K +       
Sbjct  55  KIEKKIGCGQIEE  67



Lambda      K        H        a         alpha
   0.311    0.127    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00011961

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conser...  94.1    5e-26


>CDD:461407 pfam04716, ETC_C1_NDUFA5, ETC complex I subunit conserved region. 
 Family of eukaryotic NADH-ubiquinone oxidoreductase subunits 
(EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron 
transport chain initially identified in Neurospora crassa 
as a 29.9 kDa protein. The conserved region is found at the 
N-terminus of the member proteins.
Length=67

 Score = 94.1 bits (235),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 6/73 (8%)

Query  27  GLVTHPSPRPTLIHLYRTTLENLKRFPESSVYRQSTEALTRHRLQIVESVKPPGYDAWLE  86
           GL  HP+PRP LI+LY  TL+ LK+ PE SVYRQSTEALT+HRL IVE       +  +E
Sbjct  1   GLAVHPNPRPALIYLYNKTLDKLKKIPEDSVYRQSTEALTKHRLAIVEE------EEDVE  54

Query  87  RVKKAVSAEPERF  99
           +++K +       
Sbjct  55  KIEKKIGCGQIEE  67



Lambda      K        H        a         alpha
   0.312    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00018006

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00018007

Length=737
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated regio...  607     0.0  


>CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated region.  This 
region is composed of WD40 repeats.
Length=439

 Score = 607 bits (1568),  Expect = 0.0, Method: Composition-based stats.
 Identities = 225/455 (49%), Positives = 302/455 (66%), Gaps = 25/455 (5%)

Query  200  HNEVVSTVIKGGDSSIKDGTPLSLPTKELGSCEIYPQTLSHSPNGRFVSVCGDGEYIIYT  259
             NEV S  IKG ++  KDG  LSL  KELGS EIYPQTLSH+PNGRFV VCGDGEYIIYT
Sbjct  1    ENEVRSYNIKGIEN--KDGELLSLSLKELGSVEIYPQTLSHNPNGRFVLVCGDGEYIIYT  58

Query  260  ALAWRNKAFGQALDFAWGSKDNSNDYAIRESPTSVKIFKNFKE-VTGGLDVGFQAEGLTG  318
            ALAWRNKA+G+ LDF W S    N +A+ E   +VKIFKNFKE VT  + + +  + + G
Sbjct  59   ALAWRNKAYGKGLDFVWVS---RNRFAVLEKSGTVKIFKNFKESVTKSIKLPYSVDKIFG  115

Query  319  ---GVLLGVKGQGGIGMFDWETGNLVRRIEVEP-KAVYWSESGELVTLACEDTFYVLRFS  374
               G LLGVK +G +  +DWE G LVRRI+V P K V WS+ GELV L  +DT Y+L ++
Sbjct  116  GGPGSLLGVKSEGSLSFYDWEQGKLVRRIDVSPVKYVIWSDDGELVALLSKDTVYILNYN  175

Query  375  KENYINGLNAGEADEDGVESAFEVVTDVNESVRTGQWVGDCFIYTNSTNRLNYLVGDQTY  434
             E            EDGVE AFEV+ +++E V++G W GD FIYT S N L YLV   + 
Sbjct  176  LEAV----------EDGVEDAFEVLHEISERVKSGAWDGDVFIYTTS-NHLKYLVNGDSG  224

Query  435  TISHFDQGMYVLGYLPRDGRIYLADKDVNIVSFGLSLSMVEYQTVVLRGDMDMAAELLK-  493
             I   D+ +Y+LGYL ++ R+YL D+D N+VS+ +  S +E++  +LR D +    +++ 
Sbjct  225  IIKTLDKTLYLLGYLGKENRVYLLDRDGNVVSYEIDPSELEFKLALLRKDYEEVLRIIRA  284

Query  494  ---DVPRDQMNKVARFLEGQGYKEMALEVATDPEHRFELALSLNNLDTALEIAREANVEH  550
                 P+D+  K+ R+LE +GY E+AL+   DP+ RF+LAL L NLD ALEIA+E +   
Sbjct  285  SNLLPPKDEGQKIIRYLEKKGYPEIALQFVQDPDTRFDLALELGNLDVALEIAKELDDPA  344

Query  551  KWKIVGDAAMAAWNLALAEECFTNAKDLGSLLLLHTASGNRAGLRQLAEQASEAGLQNVA  610
            KWK +GDAA++  N+ LAEE +  AKD   LLLL+ ++GN   L++LA+ A + G  N A
Sbjct  345  KWKRLGDAALSQGNIKLAEEAYQKAKDFDKLLLLYLSTGNMEKLKKLAKIAEKRGDYNSA  404

Query  611  FSSLWSLGDVDGCIDLLVRTNRLAEAVLFAQTYKP  645
            F +   LGDV+ C+D+L++T RL EA LFA+TY P
Sbjct  405  FQNALYLGDVEKCVDILIKTGRLPEAYLFAKTYGP  439



Lambda      K        H        a         alpha
   0.316    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 935662736


Query= TCONS_00011964

Length=737
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated regio...  607     0.0  


>CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated region.  This 
region is composed of WD40 repeats.
Length=439

 Score = 607 bits (1568),  Expect = 0.0, Method: Composition-based stats.
 Identities = 225/455 (49%), Positives = 302/455 (66%), Gaps = 25/455 (5%)

Query  200  HNEVVSTVIKGGDSSIKDGTPLSLPTKELGSCEIYPQTLSHSPNGRFVSVCGDGEYIIYT  259
             NEV S  IKG ++  KDG  LSL  KELGS EIYPQTLSH+PNGRFV VCGDGEYIIYT
Sbjct  1    ENEVRSYNIKGIEN--KDGELLSLSLKELGSVEIYPQTLSHNPNGRFVLVCGDGEYIIYT  58

Query  260  ALAWRNKAFGQALDFAWGSKDNSNDYAIRESPTSVKIFKNFKE-VTGGLDVGFQAEGLTG  318
            ALAWRNKA+G+ LDF W S    N +A+ E   +VKIFKNFKE VT  + + +  + + G
Sbjct  59   ALAWRNKAYGKGLDFVWVS---RNRFAVLEKSGTVKIFKNFKESVTKSIKLPYSVDKIFG  115

Query  319  ---GVLLGVKGQGGIGMFDWETGNLVRRIEVEP-KAVYWSESGELVTLACEDTFYVLRFS  374
               G LLGVK +G +  +DWE G LVRRI+V P K V WS+ GELV L  +DT Y+L ++
Sbjct  116  GGPGSLLGVKSEGSLSFYDWEQGKLVRRIDVSPVKYVIWSDDGELVALLSKDTVYILNYN  175

Query  375  KENYINGLNAGEADEDGVESAFEVVTDVNESVRTGQWVGDCFIYTNSTNRLNYLVGDQTY  434
             E            EDGVE AFEV+ +++E V++G W GD FIYT S N L YLV   + 
Sbjct  176  LEAV----------EDGVEDAFEVLHEISERVKSGAWDGDVFIYTTS-NHLKYLVNGDSG  224

Query  435  TISHFDQGMYVLGYLPRDGRIYLADKDVNIVSFGLSLSMVEYQTVVLRGDMDMAAELLK-  493
             I   D+ +Y+LGYL ++ R+YL D+D N+VS+ +  S +E++  +LR D +    +++ 
Sbjct  225  IIKTLDKTLYLLGYLGKENRVYLLDRDGNVVSYEIDPSELEFKLALLRKDYEEVLRIIRA  284

Query  494  ---DVPRDQMNKVARFLEGQGYKEMALEVATDPEHRFELALSLNNLDTALEIAREANVEH  550
                 P+D+  K+ R+LE +GY E+AL+   DP+ RF+LAL L NLD ALEIA+E +   
Sbjct  285  SNLLPPKDEGQKIIRYLEKKGYPEIALQFVQDPDTRFDLALELGNLDVALEIAKELDDPA  344

Query  551  KWKIVGDAAMAAWNLALAEECFTNAKDLGSLLLLHTASGNRAGLRQLAEQASEAGLQNVA  610
            KWK +GDAA++  N+ LAEE +  AKD   LLLL+ ++GN   L++LA+ A + G  N A
Sbjct  345  KWKRLGDAALSQGNIKLAEEAYQKAKDFDKLLLLYLSTGNMEKLKKLAKIAEKRGDYNSA  404

Query  611  FSSLWSLGDVDGCIDLLVRTNRLAEAVLFAQTYKP  645
            F +   LGDV+ C+D+L++T RL EA LFA+TY P
Sbjct  405  FQNALYLGDVEKCVDILIKTGRLPEAYLFAKTYGP  439



Lambda      K        H        a         alpha
   0.316    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 935662736


Query= TCONS_00018008

Length=855
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated regio...  609     0.0  


>CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated region.  This 
region is composed of WD40 repeats.
Length=439

 Score = 609 bits (1572),  Expect = 0.0, Method: Composition-based stats.
 Identities = 225/455 (49%), Positives = 302/455 (66%), Gaps = 25/455 (5%)

Query  318  HNEVVSTVIKGGDSSIKDGTPLSLPTKELGSCEIYPQTLSHSPNGRFVSVCGDGEYIIYT  377
             NEV S  IKG ++  KDG  LSL  KELGS EIYPQTLSH+PNGRFV VCGDGEYIIYT
Sbjct  1    ENEVRSYNIKGIEN--KDGELLSLSLKELGSVEIYPQTLSHNPNGRFVLVCGDGEYIIYT  58

Query  378  ALAWRNKAFGQALDFAWGSKDNSNDYAIRESPTSVKIFKNFKE-VTGGLDVGFQAEGLTG  436
            ALAWRNKA+G+ LDF W S    N +A+ E   +VKIFKNFKE VT  + + +  + + G
Sbjct  59   ALAWRNKAYGKGLDFVWVS---RNRFAVLEKSGTVKIFKNFKESVTKSIKLPYSVDKIFG  115

Query  437  ---GVLLGVKGQGGIGMFDWETGNLVRRIEVEP-KAVYWSESGELVTLACEDTFYVLRFS  492
               G LLGVK +G +  +DWE G LVRRI+V P K V WS+ GELV L  +DT Y+L ++
Sbjct  116  GGPGSLLGVKSEGSLSFYDWEQGKLVRRIDVSPVKYVIWSDDGELVALLSKDTVYILNYN  175

Query  493  KENYINGLNAGEADEDGVESAFEVVTDVNESVRTGQWVGDCFIYTNSTNRLNYLVGDQTY  552
             E            EDGVE AFEV+ +++E V++G W GD FIYT S N L YLV   + 
Sbjct  176  LEAV----------EDGVEDAFEVLHEISERVKSGAWDGDVFIYTTS-NHLKYLVNGDSG  224

Query  553  TISHFDQGMYVLGYLPRDGRIYLADKDVNIVSFGLSLSMVEYQTVVLRGDMDMAAELLK-  611
             I   D+ +Y+LGYL ++ R+YL D+D N+VS+ +  S +E++  +LR D +    +++ 
Sbjct  225  IIKTLDKTLYLLGYLGKENRVYLLDRDGNVVSYEIDPSELEFKLALLRKDYEEVLRIIRA  284

Query  612  ---DVPRDQMNKVARFLEGQGYKEMALEVATDPEHRFELALSLNNLDTALEIAREANVEH  668
                 P+D+  K+ R+LE +GY E+AL+   DP+ RF+LAL L NLD ALEIA+E +   
Sbjct  285  SNLLPPKDEGQKIIRYLEKKGYPEIALQFVQDPDTRFDLALELGNLDVALEIAKELDDPA  344

Query  669  KWKIVGDAAMAAWNLALAEECFTNAKDLGSLLLLHTASGNRAGLRQLAEQASEAGLQNVA  728
            KWK +GDAA++  N+ LAEE +  AKD   LLLL+ ++GN   L++LA+ A + G  N A
Sbjct  345  KWKRLGDAALSQGNIKLAEEAYQKAKDFDKLLLLYLSTGNMEKLKKLAKIAEKRGDYNSA  404

Query  729  FSSLWSLGDVDGCIDLLVRTNRLAEAVLFAQTYKP  763
            F +   LGDV+ C+D+L++T RL EA LFA+TY P
Sbjct  405  FQNALYLGDVEKCVDILIKTGRLPEAYLFAKTYGP  439



Lambda      K        H        a         alpha
   0.317    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1090990640


Query= TCONS_00011967

Length=737
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated regio...  607     0.0  


>CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated region.  This 
region is composed of WD40 repeats.
Length=439

 Score = 607 bits (1568),  Expect = 0.0, Method: Composition-based stats.
 Identities = 225/455 (49%), Positives = 302/455 (66%), Gaps = 25/455 (5%)

Query  200  HNEVVSTVIKGGDSSIKDGTPLSLPTKELGSCEIYPQTLSHSPNGRFVSVCGDGEYIIYT  259
             NEV S  IKG ++  KDG  LSL  KELGS EIYPQTLSH+PNGRFV VCGDGEYIIYT
Sbjct  1    ENEVRSYNIKGIEN--KDGELLSLSLKELGSVEIYPQTLSHNPNGRFVLVCGDGEYIIYT  58

Query  260  ALAWRNKAFGQALDFAWGSKDNSNDYAIRESPTSVKIFKNFKE-VTGGLDVGFQAEGLTG  318
            ALAWRNKA+G+ LDF W S    N +A+ E   +VKIFKNFKE VT  + + +  + + G
Sbjct  59   ALAWRNKAYGKGLDFVWVS---RNRFAVLEKSGTVKIFKNFKESVTKSIKLPYSVDKIFG  115

Query  319  ---GVLLGVKGQGGIGMFDWETGNLVRRIEVEP-KAVYWSESGELVTLACEDTFYVLRFS  374
               G LLGVK +G +  +DWE G LVRRI+V P K V WS+ GELV L  +DT Y+L ++
Sbjct  116  GGPGSLLGVKSEGSLSFYDWEQGKLVRRIDVSPVKYVIWSDDGELVALLSKDTVYILNYN  175

Query  375  KENYINGLNAGEADEDGVESAFEVVTDVNESVRTGQWVGDCFIYTNSTNRLNYLVGDQTY  434
             E            EDGVE AFEV+ +++E V++G W GD FIYT S N L YLV   + 
Sbjct  176  LEAV----------EDGVEDAFEVLHEISERVKSGAWDGDVFIYTTS-NHLKYLVNGDSG  224

Query  435  TISHFDQGMYVLGYLPRDGRIYLADKDVNIVSFGLSLSMVEYQTVVLRGDMDMAAELLK-  493
             I   D+ +Y+LGYL ++ R+YL D+D N+VS+ +  S +E++  +LR D +    +++ 
Sbjct  225  IIKTLDKTLYLLGYLGKENRVYLLDRDGNVVSYEIDPSELEFKLALLRKDYEEVLRIIRA  284

Query  494  ---DVPRDQMNKVARFLEGQGYKEMALEVATDPEHRFELALSLNNLDTALEIAREANVEH  550
                 P+D+  K+ R+LE +GY E+AL+   DP+ RF+LAL L NLD ALEIA+E +   
Sbjct  285  SNLLPPKDEGQKIIRYLEKKGYPEIALQFVQDPDTRFDLALELGNLDVALEIAKELDDPA  344

Query  551  KWKIVGDAAMAAWNLALAEECFTNAKDLGSLLLLHTASGNRAGLRQLAEQASEAGLQNVA  610
            KWK +GDAA++  N+ LAEE +  AKD   LLLL+ ++GN   L++LA+ A + G  N A
Sbjct  345  KWKRLGDAALSQGNIKLAEEAYQKAKDFDKLLLLYLSTGNMEKLKKLAKIAEKRGDYNSA  404

Query  611  FSSLWSLGDVDGCIDLLVRTNRLAEAVLFAQTYKP  645
            F +   LGDV+ C+D+L++T RL EA LFA+TY P
Sbjct  405  FQNALYLGDVEKCVDILIKTGRLPEAYLFAKTYGP  439



Lambda      K        H        a         alpha
   0.316    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 935662736


Query= TCONS_00011966

Length=855
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated regio...  608     0.0  


>CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated region.  This 
region is composed of WD40 repeats.
Length=439

 Score = 608 bits (1569),  Expect = 0.0, Method: Composition-based stats.
 Identities = 225/455 (49%), Positives = 302/455 (66%), Gaps = 25/455 (5%)

Query  318  HNEVVSTVIKGGDSSIKDGTPLSLPTKELGSCEIYPQTLSHSPNGRFVSVCGDGEYIIYT  377
             NEV S  IKG ++  KDG  LSL  KELGS EIYPQTLSH+PNGRFV VCGDGEYIIYT
Sbjct  1    ENEVRSYNIKGIEN--KDGELLSLSLKELGSVEIYPQTLSHNPNGRFVLVCGDGEYIIYT  58

Query  378  ALAWRNKAFGQALDFAWGSKDNSNDYAIRESPTSVKIFKNFKE-VTGGLDVGFQAEGLTG  436
            ALAWRNKA+G+ LDF W S    N +A+ E   +VKIFKNFKE VT  + + +  + + G
Sbjct  59   ALAWRNKAYGKGLDFVWVS---RNRFAVLEKSGTVKIFKNFKESVTKSIKLPYSVDKIFG  115

Query  437  ---GVLLGVKGQGGIGMFDWETGNLVRRIEVEP-KAVYWSESGELVTLACEDTFYVLRFS  492
               G LLGVK +G +  +DWE G LVRRI+V P K V WS+ GELV L  +DT Y+L ++
Sbjct  116  GGPGSLLGVKSEGSLSFYDWEQGKLVRRIDVSPVKYVIWSDDGELVALLSKDTVYILNYN  175

Query  493  KENYINGLNAGEADEDGVESAFEVVTDVNESVRTGQWVGDCFIYTNSTNRLNYLVGDQTY  552
             E            EDGVE AFEV+ +++E V++G W GD FIYT S N L YLV   + 
Sbjct  176  LEAV----------EDGVEDAFEVLHEISERVKSGAWDGDVFIYTTS-NHLKYLVNGDSG  224

Query  553  TISHFDQGMYVLGYLPRDGRIYLADKDVNIVSFGLSLSMVEYQTVVLRGDMDMAAELLK-  611
             I   D+ +Y+LGYL ++ R+YL D+D N+VS+ +  S +E++  +LR D +    +++ 
Sbjct  225  IIKTLDKTLYLLGYLGKENRVYLLDRDGNVVSYEIDPSELEFKLALLRKDYEEVLRIIRA  284

Query  612  ---DVPRDQMNKVARFLEGQGYKEMALEVATDPEHRFELALSLNNLDTALEIAREANVEH  668
                 P+D+  K+ R+LE +GY E+AL+   DP+ RF+LAL L NLD ALEIA+E +   
Sbjct  285  SNLLPPKDEGQKIIRYLEKKGYPEIALQFVQDPDTRFDLALELGNLDVALEIAKELDDPA  344

Query  669  KWKIVGDAAMAAWNLALAEECFTNAKDLGSLLLLHTASGNRAGLRQLAEQASEAGLQNVA  728
            KWK +GDAA++  N+ LAEE +  AKD   LLLL+ ++GN   L++LA+ A + G  N A
Sbjct  345  KWKRLGDAALSQGNIKLAEEAYQKAKDFDKLLLLYLSTGNMEKLKKLAKIAEKRGDYNSA  404

Query  729  FSSLWSLGDVDGCIDLLVRTNRLAEAVLFAQTYKP  763
            F +   LGDV+ C+D+L++T RL EA LFA+TY P
Sbjct  405  FQNALYLGDVEKCVDILIKTGRLPEAYLFAKTYGP  439



Lambda      K        H        a         alpha
   0.317    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1090990640


Query= TCONS_00011968

Length=855
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated regio...  608     0.0  


>CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated region.  This 
region is composed of WD40 repeats.
Length=439

 Score = 608 bits (1570),  Expect = 0.0, Method: Composition-based stats.
 Identities = 225/455 (49%), Positives = 302/455 (66%), Gaps = 25/455 (5%)

Query  318  HNEVVSTVIKGGDSSIKDGTPLSLPTKELGSCEIYPQTLSHSPNGRFVSVCGDGEYIIYT  377
             NEV S  IKG ++  KDG  LSL  KELGS EIYPQTLSH+PNGRFV VCGDGEYIIYT
Sbjct  1    ENEVRSYNIKGIEN--KDGELLSLSLKELGSVEIYPQTLSHNPNGRFVLVCGDGEYIIYT  58

Query  378  ALAWRNKAFGQALDFAWGSKDNSNDYAIRESPTSVKIFKNFKE-VTGGLDVGFQAEGLTG  436
            ALAWRNKA+G+ LDF W S    N +A+ E   +VKIFKNFKE VT  + + +  + + G
Sbjct  59   ALAWRNKAYGKGLDFVWVS---RNRFAVLEKSGTVKIFKNFKESVTKSIKLPYSVDKIFG  115

Query  437  ---GVLLGVKGQGGIGMFDWETGNLVRRIEVEP-KAVYWSESGELVTLACEDTFYVLRFS  492
               G LLGVK +G +  +DWE G LVRRI+V P K V WS+ GELV L  +DT Y+L ++
Sbjct  116  GGPGSLLGVKSEGSLSFYDWEQGKLVRRIDVSPVKYVIWSDDGELVALLSKDTVYILNYN  175

Query  493  KENYINGLNAGEADEDGVESAFEVVTDVNESVRTGQWVGDCFIYTNSTNRLNYLVGDQTY  552
             E            EDGVE AFEV+ +++E V++G W GD FIYT S N L YLV   + 
Sbjct  176  LEAV----------EDGVEDAFEVLHEISERVKSGAWDGDVFIYTTS-NHLKYLVNGDSG  224

Query  553  TISHFDQGMYVLGYLPRDGRIYLADKDVNIVSFGLSLSMVEYQTVVLRGDMDMAAELLK-  611
             I   D+ +Y+LGYL ++ R+YL D+D N+VS+ +  S +E++  +LR D +    +++ 
Sbjct  225  IIKTLDKTLYLLGYLGKENRVYLLDRDGNVVSYEIDPSELEFKLALLRKDYEEVLRIIRA  284

Query  612  ---DVPRDQMNKVARFLEGQGYKEMALEVATDPEHRFELALSLNNLDTALEIAREANVEH  668
                 P+D+  K+ R+LE +GY E+AL+   DP+ RF+LAL L NLD ALEIA+E +   
Sbjct  285  SNLLPPKDEGQKIIRYLEKKGYPEIALQFVQDPDTRFDLALELGNLDVALEIAKELDDPA  344

Query  669  KWKIVGDAAMAAWNLALAEECFTNAKDLGSLLLLHTASGNRAGLRQLAEQASEAGLQNVA  728
            KWK +GDAA++  N+ LAEE +  AKD   LLLL+ ++GN   L++LA+ A + G  N A
Sbjct  345  KWKRLGDAALSQGNIKLAEEAYQKAKDFDKLLLLYLSTGNMEKLKKLAKIAEKRGDYNSA  404

Query  729  FSSLWSLGDVDGCIDLLVRTNRLAEAVLFAQTYKP  763
            F +   LGDV+ C+D+L++T RL EA LFA+TY P
Sbjct  405  FQNALYLGDVEKCVDILIKTGRLPEAYLFAKTYGP  439



Lambda      K        H        a         alpha
   0.317    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1090990640


Query= TCONS_00011965

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated regio...  218     2e-66


>CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated region.  This 
region is composed of WD40 repeats.
Length=439

 Score = 218 bits (557),  Expect = 2e-66, Method: Composition-based stats.
 Identities = 93/157 (59%), Positives = 110/157 (70%), Gaps = 10/157 (6%)

Query  318  HNEVVSTVIKGGDSSIKDGTPLSLPTKELGSCEIYPQTLSHSPNGRFVSVCGDGEYIIYT  377
             NEV S  IKG ++  KDG  LSL  KELGS EIYPQTLSH+PNGRFV VCGDGEYIIYT
Sbjct  1    ENEVRSYNIKGIEN--KDGELLSLSLKELGSVEIYPQTLSHNPNGRFVLVCGDGEYIIYT  58

Query  378  ALAWRNKAFGQALDFAWGSKDNSNDYAIRESPTSVKIFKNFKE-VTGGLDVGFQAEGLTG  436
            ALAWRNKA+G+ LDF W S    N +A+ E   +VKIFKNFKE VT  + + +  + + G
Sbjct  59   ALAWRNKAYGKGLDFVWVS---RNRFAVLEKSGTVKIFKNFKESVTKSIKLPYSVDKIFG  115

Query  437  ---GVLLGVKGQGGIGMFDWETGNLVRRIEVEP-KAV  469
               G LLGVK +G +  +DWE G LVRRI+V P K V
Sbjct  116  GGPGSLLGVKSEGSLSFYDWEQGKLVRRIDVSPVKYV  152



Lambda      K        H        a         alpha
   0.318    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00011969

Length=855
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated regio...  608     0.0  


>CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated region.  This 
region is composed of WD40 repeats.
Length=439

 Score = 608 bits (1569),  Expect = 0.0, Method: Composition-based stats.
 Identities = 225/455 (49%), Positives = 302/455 (66%), Gaps = 25/455 (5%)

Query  318  HNEVVSTVIKGGDSSIKDGTPLSLPTKELGSCEIYPQTLSHSPNGRFVSVCGDGEYIIYT  377
             NEV S  IKG ++  KDG  LSL  KELGS EIYPQTLSH+PNGRFV VCGDGEYIIYT
Sbjct  1    ENEVRSYNIKGIEN--KDGELLSLSLKELGSVEIYPQTLSHNPNGRFVLVCGDGEYIIYT  58

Query  378  ALAWRNKAFGQALDFAWGSKDNSNDYAIRESPTSVKIFKNFKE-VTGGLDVGFQAEGLTG  436
            ALAWRNKA+G+ LDF W S    N +A+ E   +VKIFKNFKE VT  + + +  + + G
Sbjct  59   ALAWRNKAYGKGLDFVWVS---RNRFAVLEKSGTVKIFKNFKESVTKSIKLPYSVDKIFG  115

Query  437  ---GVLLGVKGQGGIGMFDWETGNLVRRIEVEP-KAVYWSESGELVTLACEDTFYVLRFS  492
               G LLGVK +G +  +DWE G LVRRI+V P K V WS+ GELV L  +DT Y+L ++
Sbjct  116  GGPGSLLGVKSEGSLSFYDWEQGKLVRRIDVSPVKYVIWSDDGELVALLSKDTVYILNYN  175

Query  493  KENYINGLNAGEADEDGVESAFEVVTDVNESVRTGQWVGDCFIYTNSTNRLNYLVGDQTY  552
             E            EDGVE AFEV+ +++E V++G W GD FIYT S N L YLV   + 
Sbjct  176  LEAV----------EDGVEDAFEVLHEISERVKSGAWDGDVFIYTTS-NHLKYLVNGDSG  224

Query  553  TISHFDQGMYVLGYLPRDGRIYLADKDVNIVSFGLSLSMVEYQTVVLRGDMDMAAELLK-  611
             I   D+ +Y+LGYL ++ R+YL D+D N+VS+ +  S +E++  +LR D +    +++ 
Sbjct  225  IIKTLDKTLYLLGYLGKENRVYLLDRDGNVVSYEIDPSELEFKLALLRKDYEEVLRIIRA  284

Query  612  ---DVPRDQMNKVARFLEGQGYKEMALEVATDPEHRFELALSLNNLDTALEIAREANVEH  668
                 P+D+  K+ R+LE +GY E+AL+   DP+ RF+LAL L NLD ALEIA+E +   
Sbjct  285  SNLLPPKDEGQKIIRYLEKKGYPEIALQFVQDPDTRFDLALELGNLDVALEIAKELDDPA  344

Query  669  KWKIVGDAAMAAWNLALAEECFTNAKDLGSLLLLHTASGNRAGLRQLAEQASEAGLQNVA  728
            KWK +GDAA++  N+ LAEE +  AKD   LLLL+ ++GN   L++LA+ A + G  N A
Sbjct  345  KWKRLGDAALSQGNIKLAEEAYQKAKDFDKLLLLYLSTGNMEKLKKLAKIAEKRGDYNSA  404

Query  729  FSSLWSLGDVDGCIDLLVRTNRLAEAVLFAQTYKP  763
            F +   LGDV+ C+D+L++T RL EA LFA+TY P
Sbjct  405  FQNALYLGDVEKCVDILIKTGRLPEAYLFAKTYGP  439



Lambda      K        H        a         alpha
   0.317    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1090990640


Query= TCONS_00011970

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-ter...  143     6e-41
CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossman...  70.9    2e-15


>CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-terminal domain. 
 
Length=246

 Score = 143 bits (362),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 66/236 (28%), Positives = 100/236 (42%), Gaps = 25/236 (11%)

Query  154  FANSAIDRIVPNQPP------------NAGLNVRIEKFYEWTVEQTPFGEFGHPDIPAIH  201
            F N+ +DRIVP                   L V +E F +W +E          +   + 
Sbjct  5    FPNTMVDRIVPATTDDELAKIAQALGVEDPLPVTVEPFRQWVIEDNFVKGRPLLEKVGVE  64

Query  202  WVDDLKPYIERKLFTVNTGHATTAYYGHMRGKKMIADALADAEIRQIVHKVLEQTAKLIT  261
            +V+D+ PY ERKL  +N GHAT AY G++ G + I +A+ D EIR  V  V+ +    + 
Sbjct  65   YVEDVDPYEERKLRILNGGHATLAYLGYLAGYQTIHEAMLDPEIRAFVKGVMTEEVAPLL  124

Query  262  TKHEITEQEQNEYVDTIVKRMSNPFLEDNVERVGR-----APLRKLSRNERFIGPASQ--  314
             K      +   Y D I++R SNP+++D V RV R      P RKL    R I       
Sbjct  125  AKVP--GDDLEAYADKIIERFSNPYIKDTVWRVARDGSQKLPQRKLPSLRRHIRAGPLPE  182

Query  315  -LAEKGLPFDALLGSIEMALRFQNVPGDEESAELAKILKEMSAEEATGKLTGLEKH  369
             LA     +   L  ++    +   P D ++ EL      + A+E    +      
Sbjct  183  LLALGVAGWMRYLQGVDEGGNY-IDPEDPQAQELQA--AAIIAKERPAAVLAEVSG  235


>CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossmann domain. 
 
Length=151

 Score = 70.9 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 65/149 (44%), Gaps = 28/149 (19%)

Query  4    KAIQFGGGNIGRGFVA---EFLHEAGYEVVFIDVVDKIIDA---LKSTPSYEVT-EVSEE  56
            + + FG GN  R   A   + L E G++   +DV  +++DA   L +        E  EE
Sbjct  2    RIVHFGAGNFHRAHQAFIGDLLAENGFDWGIVDVNLRVVDAREALNAQDGLYTVIEDGEE  61

Query  57   GEKTKTITNYRAINSKTNE-EDVVKEI--GTADVVTCAVGP----------NVLKFIAPV  103
            G + + + +  A+NS   + E +++ +    AD+V+  V            N L  IA  
Sbjct  62   GRQARLVGSVNAVNSVEEDLEALIELMAEPQADIVSTTVTEGGIDATGQLDNDLPDIAAD  121

Query  104  IAKGIDARTA--------SKPVAVIACEN  124
            +AK      A         KP+ +IAC+N
Sbjct  122  LAKPEYLVEALKRRRAAGLKPLTIIACDN  150



Lambda      K        H        a         alpha
   0.315    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00011971

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461307 pfam04433, SWIRM, SWIRM domain. This SWIRM domain is a...  64.1    1e-13


>CDD:461307 pfam04433, SWIRM, SWIRM domain.  This SWIRM domain is a small 
alpha-helical domain of about 85 amino acid residues found 
in chromosomal proteins. It contains a helix-turn helix motif 
and binds to DNA.
Length=78

 Score = 64.1 bits (157),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 23/77 (30%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query  445  PDLHLLTKEEVELC----NVLHIQPKPYLVIKETLLKEAMK-QGGSLKKKDARAICKIDT  499
             D   L   E  L     N     P+ YL I+  +L    +     L K DAR   K D 
Sbjct  1    SDPDKLHPIEKRLLPEFFNGKSKTPEVYLEIRNFILNLWRENPKEYLTKTDARRALKGDV  60

Query  500  TKTSRVYDFMVHSGWIN  516
               SR+++F+   G IN
Sbjct  61   NLISRIHEFLERWGLIN  77



Lambda      K        H        a         alpha
   0.313    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00011974

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-ter...  143     6e-41
CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossman...  70.9    2e-15


>CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-terminal domain. 
 
Length=246

 Score = 143 bits (362),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 66/236 (28%), Positives = 100/236 (42%), Gaps = 25/236 (11%)

Query  154  FANSAIDRIVPNQPP------------NAGLNVRIEKFYEWTVEQTPFGEFGHPDIPAIH  201
            F N+ +DRIVP                   L V +E F +W +E          +   + 
Sbjct  5    FPNTMVDRIVPATTDDELAKIAQALGVEDPLPVTVEPFRQWVIEDNFVKGRPLLEKVGVE  64

Query  202  WVDDLKPYIERKLFTVNTGHATTAYYGHMRGKKMIADALADAEIRQIVHKVLEQTAKLIT  261
            +V+D+ PY ERKL  +N GHAT AY G++ G + I +A+ D EIR  V  V+ +    + 
Sbjct  65   YVEDVDPYEERKLRILNGGHATLAYLGYLAGYQTIHEAMLDPEIRAFVKGVMTEEVAPLL  124

Query  262  TKHEITEQEQNEYVDTIVKRMSNPFLEDNVERVGR-----APLRKLSRNERFIGPASQ--  314
             K      +   Y D I++R SNP+++D V RV R      P RKL    R I       
Sbjct  125  AKVP--GDDLEAYADKIIERFSNPYIKDTVWRVARDGSQKLPQRKLPSLRRHIRAGPLPE  182

Query  315  -LAEKGLPFDALLGSIEMALRFQNVPGDEESAELAKILKEMSAEEATGKLTGLEKH  369
             LA     +   L  ++    +   P D ++ EL      + A+E    +      
Sbjct  183  LLALGVAGWMRYLQGVDEGGNY-IDPEDPQAQELQA--AAIIAKERPAAVLAEVSG  235


>CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossmann domain. 
 
Length=151

 Score = 70.9 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 65/149 (44%), Gaps = 28/149 (19%)

Query  4    KAIQFGGGNIGRGFVA---EFLHEAGYEVVFIDVVDKIIDA---LKSTPSYEVT-EVSEE  56
            + + FG GN  R   A   + L E G++   +DV  +++DA   L +        E  EE
Sbjct  2    RIVHFGAGNFHRAHQAFIGDLLAENGFDWGIVDVNLRVVDAREALNAQDGLYTVIEDGEE  61

Query  57   GEKTKTITNYRAINSKTNE-EDVVKEI--GTADVVTCAVGP----------NVLKFIAPV  103
            G + + + +  A+NS   + E +++ +    AD+V+  V            N L  IA  
Sbjct  62   GRQARLVGSVNAVNSVEEDLEALIELMAEPQADIVSTTVTEGGIDATGQLDNDLPDIAAD  121

Query  104  IAKGIDARTA--------SKPVAVIACEN  124
            +AK      A         KP+ +IAC+N
Sbjct  122  LAKPEYLVEALKRRRAAGLKPLTIIACDN  150



Lambda      K        H        a         alpha
   0.315    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00011973

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-ter...  143     6e-41
CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossman...  70.9    2e-15


>CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-terminal domain. 
 
Length=246

 Score = 143 bits (362),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 66/236 (28%), Positives = 100/236 (42%), Gaps = 25/236 (11%)

Query  154  FANSAIDRIVPNQPP------------NAGLNVRIEKFYEWTVEQTPFGEFGHPDIPAIH  201
            F N+ +DRIVP                   L V +E F +W +E          +   + 
Sbjct  5    FPNTMVDRIVPATTDDELAKIAQALGVEDPLPVTVEPFRQWVIEDNFVKGRPLLEKVGVE  64

Query  202  WVDDLKPYIERKLFTVNTGHATTAYYGHMRGKKMIADALADAEIRQIVHKVLEQTAKLIT  261
            +V+D+ PY ERKL  +N GHAT AY G++ G + I +A+ D EIR  V  V+ +    + 
Sbjct  65   YVEDVDPYEERKLRILNGGHATLAYLGYLAGYQTIHEAMLDPEIRAFVKGVMTEEVAPLL  124

Query  262  TKHEITEQEQNEYVDTIVKRMSNPFLEDNVERVGR-----APLRKLSRNERFIGPASQ--  314
             K      +   Y D I++R SNP+++D V RV R      P RKL    R I       
Sbjct  125  AKVP--GDDLEAYADKIIERFSNPYIKDTVWRVARDGSQKLPQRKLPSLRRHIRAGPLPE  182

Query  315  -LAEKGLPFDALLGSIEMALRFQNVPGDEESAELAKILKEMSAEEATGKLTGLEKH  369
             LA     +   L  ++    +   P D ++ EL      + A+E    +      
Sbjct  183  LLALGVAGWMRYLQGVDEGGNY-IDPEDPQAQELQA--AAIIAKERPAAVLAEVSG  235


>CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossmann domain. 
 
Length=151

 Score = 70.9 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 65/149 (44%), Gaps = 28/149 (19%)

Query  4    KAIQFGGGNIGRGFVA---EFLHEAGYEVVFIDVVDKIIDA---LKSTPSYEVT-EVSEE  56
            + + FG GN  R   A   + L E G++   +DV  +++DA   L +        E  EE
Sbjct  2    RIVHFGAGNFHRAHQAFIGDLLAENGFDWGIVDVNLRVVDAREALNAQDGLYTVIEDGEE  61

Query  57   GEKTKTITNYRAINSKTNE-EDVVKEI--GTADVVTCAVGP----------NVLKFIAPV  103
            G + + + +  A+NS   + E +++ +    AD+V+  V            N L  IA  
Sbjct  62   GRQARLVGSVNAVNSVEEDLEALIELMAEPQADIVSTTVTEGGIDATGQLDNDLPDIAAD  121

Query  104  IAKGIDARTA--------SKPVAVIACEN  124
            +AK      A         KP+ +IAC+N
Sbjct  122  LAKPEYLVEALKRRRAAGLKPLTIIACDN  150



Lambda      K        H        a         alpha
   0.315    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00011972

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395302 pfam00378, ECH_1, Enoyl-CoA hydratase/isomerase. This ...  124     9e-37


>CDD:395302 pfam00378, ECH_1, Enoyl-CoA hydratase/isomerase.  This family 
contains a diverse set of enzymes including: enoyl-CoA hydratase, 
napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA 
dehydratase and dodecanoyl-CoA delta-isomerase.
Length=251

 Score = 124 bits (312),  Expect = 9e-37, Method: Composition-based stats.
 Identities = 50/105 (48%), Positives = 69/105 (66%), Gaps = 1/105 (1%)

Query  29   RSGKKPVICAVNGLCLGGGCEMVVNADIVVACRQAYFGLPEVQRGVVAIAGALPRLVRTV  88
             +  KPVI AVNG  +GGGCE+ +  DI++A   A FGL E + G++  AG   RL R +
Sbjct  85   YTCPKPVIAAVNGYAIGGGCELALACDIIIAADNASFGLNETKLGIIPGAGGTDRLPRII  144

Query  89   GRQRAMEMALTGRKVSAEEAKDWGFVNEVVDAADQVVKRAVEIAE  133
            G  +AMEM L GR++SA+EA  WG V++VV   DQ++  A E+AE
Sbjct  145  GHSKAMEMLLLGRRISAQEALKWGLVDKVV-PEDQLLDEARELAE  188



Lambda      K        H        a         alpha
   0.321    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00018010

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-ter...  143     6e-41
CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossman...  70.9    2e-15


>CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-terminal domain. 
 
Length=246

 Score = 143 bits (362),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 66/236 (28%), Positives = 100/236 (42%), Gaps = 25/236 (11%)

Query  154  FANSAIDRIVPNQPP------------NAGLNVRIEKFYEWTVEQTPFGEFGHPDIPAIH  201
            F N+ +DRIVP                   L V +E F +W +E          +   + 
Sbjct  5    FPNTMVDRIVPATTDDELAKIAQALGVEDPLPVTVEPFRQWVIEDNFVKGRPLLEKVGVE  64

Query  202  WVDDLKPYIERKLFTVNTGHATTAYYGHMRGKKMIADALADAEIRQIVHKVLEQTAKLIT  261
            +V+D+ PY ERKL  +N GHAT AY G++ G + I +A+ D EIR  V  V+ +    + 
Sbjct  65   YVEDVDPYEERKLRILNGGHATLAYLGYLAGYQTIHEAMLDPEIRAFVKGVMTEEVAPLL  124

Query  262  TKHEITEQEQNEYVDTIVKRMSNPFLEDNVERVGR-----APLRKLSRNERFIGPASQ--  314
             K      +   Y D I++R SNP+++D V RV R      P RKL    R I       
Sbjct  125  AKVP--GDDLEAYADKIIERFSNPYIKDTVWRVARDGSQKLPQRKLPSLRRHIRAGPLPE  182

Query  315  -LAEKGLPFDALLGSIEMALRFQNVPGDEESAELAKILKEMSAEEATGKLTGLEKH  369
             LA     +   L  ++    +   P D ++ EL      + A+E    +      
Sbjct  183  LLALGVAGWMRYLQGVDEGGNY-IDPEDPQAQELQA--AAIIAKERPAAVLAEVSG  235


>CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossmann domain. 
 
Length=151

 Score = 70.9 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 65/149 (44%), Gaps = 28/149 (19%)

Query  4    KAIQFGGGNIGRGFVA---EFLHEAGYEVVFIDVVDKIIDA---LKSTPSYEVT-EVSEE  56
            + + FG GN  R   A   + L E G++   +DV  +++DA   L +        E  EE
Sbjct  2    RIVHFGAGNFHRAHQAFIGDLLAENGFDWGIVDVNLRVVDAREALNAQDGLYTVIEDGEE  61

Query  57   GEKTKTITNYRAINSKTNE-EDVVKEI--GTADVVTCAVGP----------NVLKFIAPV  103
            G + + + +  A+NS   + E +++ +    AD+V+  V            N L  IA  
Sbjct  62   GRQARLVGSVNAVNSVEEDLEALIELMAEPQADIVSTTVTEGGIDATGQLDNDLPDIAAD  121

Query  104  IAKGIDARTA--------SKPVAVIACEN  124
            +AK      A         KP+ +IAC+N
Sbjct  122  LAKPEYLVEALKRRRAAGLKPLTIIACDN  150



Lambda      K        H        a         alpha
   0.315    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00011975

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-ter...  143     6e-41
CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossman...  70.9    2e-15


>CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-terminal domain. 
 
Length=246

 Score = 143 bits (362),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 66/236 (28%), Positives = 100/236 (42%), Gaps = 25/236 (11%)

Query  154  FANSAIDRIVPNQPP------------NAGLNVRIEKFYEWTVEQTPFGEFGHPDIPAIH  201
            F N+ +DRIVP                   L V +E F +W +E          +   + 
Sbjct  5    FPNTMVDRIVPATTDDELAKIAQALGVEDPLPVTVEPFRQWVIEDNFVKGRPLLEKVGVE  64

Query  202  WVDDLKPYIERKLFTVNTGHATTAYYGHMRGKKMIADALADAEIRQIVHKVLEQTAKLIT  261
            +V+D+ PY ERKL  +N GHAT AY G++ G + I +A+ D EIR  V  V+ +    + 
Sbjct  65   YVEDVDPYEERKLRILNGGHATLAYLGYLAGYQTIHEAMLDPEIRAFVKGVMTEEVAPLL  124

Query  262  TKHEITEQEQNEYVDTIVKRMSNPFLEDNVERVGR-----APLRKLSRNERFIGPASQ--  314
             K      +   Y D I++R SNP+++D V RV R      P RKL    R I       
Sbjct  125  AKVP--GDDLEAYADKIIERFSNPYIKDTVWRVARDGSQKLPQRKLPSLRRHIRAGPLPE  182

Query  315  -LAEKGLPFDALLGSIEMALRFQNVPGDEESAELAKILKEMSAEEATGKLTGLEKH  369
             LA     +   L  ++    +   P D ++ EL      + A+E    +      
Sbjct  183  LLALGVAGWMRYLQGVDEGGNY-IDPEDPQAQELQA--AAIIAKERPAAVLAEVSG  235


>CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossmann domain. 
 
Length=151

 Score = 70.9 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 65/149 (44%), Gaps = 28/149 (19%)

Query  4    KAIQFGGGNIGRGFVA---EFLHEAGYEVVFIDVVDKIIDA---LKSTPSYEVT-EVSEE  56
            + + FG GN  R   A   + L E G++   +DV  +++DA   L +        E  EE
Sbjct  2    RIVHFGAGNFHRAHQAFIGDLLAENGFDWGIVDVNLRVVDAREALNAQDGLYTVIEDGEE  61

Query  57   GEKTKTITNYRAINSKTNE-EDVVKEI--GTADVVTCAVGP----------NVLKFIAPV  103
            G + + + +  A+NS   + E +++ +    AD+V+  V            N L  IA  
Sbjct  62   GRQARLVGSVNAVNSVEEDLEALIELMAEPQADIVSTTVTEGGIDATGQLDNDLPDIAAD  121

Query  104  IAKGIDARTA--------SKPVAVIACEN  124
            +AK      A         KP+ +IAC+N
Sbjct  122  LAKPEYLVEALKRRRAAGLKPLTIIACDN  150



Lambda      K        H        a         alpha
   0.315    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00018012

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-ter...  143     6e-41
CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossman...  70.9    2e-15


>CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-terminal domain. 
 
Length=246

 Score = 143 bits (362),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 66/236 (28%), Positives = 100/236 (42%), Gaps = 25/236 (11%)

Query  154  FANSAIDRIVPNQPP------------NAGLNVRIEKFYEWTVEQTPFGEFGHPDIPAIH  201
            F N+ +DRIVP                   L V +E F +W +E          +   + 
Sbjct  5    FPNTMVDRIVPATTDDELAKIAQALGVEDPLPVTVEPFRQWVIEDNFVKGRPLLEKVGVE  64

Query  202  WVDDLKPYIERKLFTVNTGHATTAYYGHMRGKKMIADALADAEIRQIVHKVLEQTAKLIT  261
            +V+D+ PY ERKL  +N GHAT AY G++ G + I +A+ D EIR  V  V+ +    + 
Sbjct  65   YVEDVDPYEERKLRILNGGHATLAYLGYLAGYQTIHEAMLDPEIRAFVKGVMTEEVAPLL  124

Query  262  TKHEITEQEQNEYVDTIVKRMSNPFLEDNVERVGR-----APLRKLSRNERFIGPASQ--  314
             K      +   Y D I++R SNP+++D V RV R      P RKL    R I       
Sbjct  125  AKVP--GDDLEAYADKIIERFSNPYIKDTVWRVARDGSQKLPQRKLPSLRRHIRAGPLPE  182

Query  315  -LAEKGLPFDALLGSIEMALRFQNVPGDEESAELAKILKEMSAEEATGKLTGLEKH  369
             LA     +   L  ++    +   P D ++ EL      + A+E    +      
Sbjct  183  LLALGVAGWMRYLQGVDEGGNY-IDPEDPQAQELQA--AAIIAKERPAAVLAEVSG  235


>CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossmann domain. 
 
Length=151

 Score = 70.9 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 65/149 (44%), Gaps = 28/149 (19%)

Query  4    KAIQFGGGNIGRGFVA---EFLHEAGYEVVFIDVVDKIIDA---LKSTPSYEVT-EVSEE  56
            + + FG GN  R   A   + L E G++   +DV  +++DA   L +        E  EE
Sbjct  2    RIVHFGAGNFHRAHQAFIGDLLAENGFDWGIVDVNLRVVDAREALNAQDGLYTVIEDGEE  61

Query  57   GEKTKTITNYRAINSKTNE-EDVVKEI--GTADVVTCAVGP----------NVLKFIAPV  103
            G + + + +  A+NS   + E +++ +    AD+V+  V            N L  IA  
Sbjct  62   GRQARLVGSVNAVNSVEEDLEALIELMAEPQADIVSTTVTEGGIDATGQLDNDLPDIAAD  121

Query  104  IAKGIDARTA--------SKPVAVIACEN  124
            +AK      A         KP+ +IAC+N
Sbjct  122  LAKPEYLVEALKRRRAAGLKPLTIIACDN  150



Lambda      K        H        a         alpha
   0.315    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00018011

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-ter...  143     6e-41
CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossman...  70.9    2e-15


>CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-terminal domain. 
 
Length=246

 Score = 143 bits (362),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 66/236 (28%), Positives = 100/236 (42%), Gaps = 25/236 (11%)

Query  154  FANSAIDRIVPNQPP------------NAGLNVRIEKFYEWTVEQTPFGEFGHPDIPAIH  201
            F N+ +DRIVP                   L V +E F +W +E          +   + 
Sbjct  5    FPNTMVDRIVPATTDDELAKIAQALGVEDPLPVTVEPFRQWVIEDNFVKGRPLLEKVGVE  64

Query  202  WVDDLKPYIERKLFTVNTGHATTAYYGHMRGKKMIADALADAEIRQIVHKVLEQTAKLIT  261
            +V+D+ PY ERKL  +N GHAT AY G++ G + I +A+ D EIR  V  V+ +    + 
Sbjct  65   YVEDVDPYEERKLRILNGGHATLAYLGYLAGYQTIHEAMLDPEIRAFVKGVMTEEVAPLL  124

Query  262  TKHEITEQEQNEYVDTIVKRMSNPFLEDNVERVGR-----APLRKLSRNERFIGPASQ--  314
             K      +   Y D I++R SNP+++D V RV R      P RKL    R I       
Sbjct  125  AKVP--GDDLEAYADKIIERFSNPYIKDTVWRVARDGSQKLPQRKLPSLRRHIRAGPLPE  182

Query  315  -LAEKGLPFDALLGSIEMALRFQNVPGDEESAELAKILKEMSAEEATGKLTGLEKH  369
             LA     +   L  ++    +   P D ++ EL      + A+E    +      
Sbjct  183  LLALGVAGWMRYLQGVDEGGNY-IDPEDPQAQELQA--AAIIAKERPAAVLAEVSG  235


>CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossmann domain. 
 
Length=151

 Score = 70.9 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 65/149 (44%), Gaps = 28/149 (19%)

Query  4    KAIQFGGGNIGRGFVA---EFLHEAGYEVVFIDVVDKIIDA---LKSTPSYEVT-EVSEE  56
            + + FG GN  R   A   + L E G++   +DV  +++DA   L +        E  EE
Sbjct  2    RIVHFGAGNFHRAHQAFIGDLLAENGFDWGIVDVNLRVVDAREALNAQDGLYTVIEDGEE  61

Query  57   GEKTKTITNYRAINSKTNE-EDVVKEI--GTADVVTCAVGP----------NVLKFIAPV  103
            G + + + +  A+NS   + E +++ +    AD+V+  V            N L  IA  
Sbjct  62   GRQARLVGSVNAVNSVEEDLEALIELMAEPQADIVSTTVTEGGIDATGQLDNDLPDIAAD  121

Query  104  IAKGIDARTA--------SKPVAVIACEN  124
            +AK      A         KP+ +IAC+N
Sbjct  122  LAKPEYLVEALKRRRAAGLKPLTIIACDN  150



Lambda      K        H        a         alpha
   0.315    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00011976

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-ter...  143     6e-41
CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossman...  70.9    2e-15


>CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-terminal domain. 
 
Length=246

 Score = 143 bits (362),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 66/236 (28%), Positives = 100/236 (42%), Gaps = 25/236 (11%)

Query  154  FANSAIDRIVPNQPP------------NAGLNVRIEKFYEWTVEQTPFGEFGHPDIPAIH  201
            F N+ +DRIVP                   L V +E F +W +E          +   + 
Sbjct  5    FPNTMVDRIVPATTDDELAKIAQALGVEDPLPVTVEPFRQWVIEDNFVKGRPLLEKVGVE  64

Query  202  WVDDLKPYIERKLFTVNTGHATTAYYGHMRGKKMIADALADAEIRQIVHKVLEQTAKLIT  261
            +V+D+ PY ERKL  +N GHAT AY G++ G + I +A+ D EIR  V  V+ +    + 
Sbjct  65   YVEDVDPYEERKLRILNGGHATLAYLGYLAGYQTIHEAMLDPEIRAFVKGVMTEEVAPLL  124

Query  262  TKHEITEQEQNEYVDTIVKRMSNPFLEDNVERVGR-----APLRKLSRNERFIGPASQ--  314
             K      +   Y D I++R SNP+++D V RV R      P RKL    R I       
Sbjct  125  AKVP--GDDLEAYADKIIERFSNPYIKDTVWRVARDGSQKLPQRKLPSLRRHIRAGPLPE  182

Query  315  -LAEKGLPFDALLGSIEMALRFQNVPGDEESAELAKILKEMSAEEATGKLTGLEKH  369
             LA     +   L  ++    +   P D ++ EL      + A+E    +      
Sbjct  183  LLALGVAGWMRYLQGVDEGGNY-IDPEDPQAQELQA--AAIIAKERPAAVLAEVSG  235


>CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossmann domain. 
 
Length=151

 Score = 70.9 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 65/149 (44%), Gaps = 28/149 (19%)

Query  4    KAIQFGGGNIGRGFVA---EFLHEAGYEVVFIDVVDKIIDA---LKSTPSYEVT-EVSEE  56
            + + FG GN  R   A   + L E G++   +DV  +++DA   L +        E  EE
Sbjct  2    RIVHFGAGNFHRAHQAFIGDLLAENGFDWGIVDVNLRVVDAREALNAQDGLYTVIEDGEE  61

Query  57   GEKTKTITNYRAINSKTNE-EDVVKEI--GTADVVTCAVGP----------NVLKFIAPV  103
            G + + + +  A+NS   + E +++ +    AD+V+  V            N L  IA  
Sbjct  62   GRQARLVGSVNAVNSVEEDLEALIELMAEPQADIVSTTVTEGGIDATGQLDNDLPDIAAD  121

Query  104  IAKGIDARTA--------SKPVAVIACEN  124
            +AK      A         KP+ +IAC+N
Sbjct  122  LAKPEYLVEALKRRRAAGLKPLTIIACDN  150



Lambda      K        H        a         alpha
   0.315    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00011977

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-ter...  143     6e-41
CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossman...  70.9    2e-15


>CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-terminal domain. 
 
Length=246

 Score = 143 bits (362),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 66/236 (28%), Positives = 100/236 (42%), Gaps = 25/236 (11%)

Query  154  FANSAIDRIVPNQPP------------NAGLNVRIEKFYEWTVEQTPFGEFGHPDIPAIH  201
            F N+ +DRIVP                   L V +E F +W +E          +   + 
Sbjct  5    FPNTMVDRIVPATTDDELAKIAQALGVEDPLPVTVEPFRQWVIEDNFVKGRPLLEKVGVE  64

Query  202  WVDDLKPYIERKLFTVNTGHATTAYYGHMRGKKMIADALADAEIRQIVHKVLEQTAKLIT  261
            +V+D+ PY ERKL  +N GHAT AY G++ G + I +A+ D EIR  V  V+ +    + 
Sbjct  65   YVEDVDPYEERKLRILNGGHATLAYLGYLAGYQTIHEAMLDPEIRAFVKGVMTEEVAPLL  124

Query  262  TKHEITEQEQNEYVDTIVKRMSNPFLEDNVERVGR-----APLRKLSRNERFIGPASQ--  314
             K      +   Y D I++R SNP+++D V RV R      P RKL    R I       
Sbjct  125  AKVP--GDDLEAYADKIIERFSNPYIKDTVWRVARDGSQKLPQRKLPSLRRHIRAGPLPE  182

Query  315  -LAEKGLPFDALLGSIEMALRFQNVPGDEESAELAKILKEMSAEEATGKLTGLEKH  369
             LA     +   L  ++    +   P D ++ EL      + A+E    +      
Sbjct  183  LLALGVAGWMRYLQGVDEGGNY-IDPEDPQAQELQA--AAIIAKERPAAVLAEVSG  235


>CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossmann domain. 
 
Length=151

 Score = 70.9 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 65/149 (44%), Gaps = 28/149 (19%)

Query  4    KAIQFGGGNIGRGFVA---EFLHEAGYEVVFIDVVDKIIDA---LKSTPSYEVT-EVSEE  56
            + + FG GN  R   A   + L E G++   +DV  +++DA   L +        E  EE
Sbjct  2    RIVHFGAGNFHRAHQAFIGDLLAENGFDWGIVDVNLRVVDAREALNAQDGLYTVIEDGEE  61

Query  57   GEKTKTITNYRAINSKTNE-EDVVKEI--GTADVVTCAVGP----------NVLKFIAPV  103
            G + + + +  A+NS   + E +++ +    AD+V+  V            N L  IA  
Sbjct  62   GRQARLVGSVNAVNSVEEDLEALIELMAEPQADIVSTTVTEGGIDATGQLDNDLPDIAAD  121

Query  104  IAKGIDARTA--------SKPVAVIACEN  124
            +AK      A         KP+ +IAC+N
Sbjct  122  LAKPEYLVEALKRRRAAGLKPLTIIACDN  150



Lambda      K        H        a         alpha
   0.315    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00011978

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-ter...  143     6e-41
CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossman...  70.9    2e-15


>CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-terminal domain. 
 
Length=246

 Score = 143 bits (362),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 66/236 (28%), Positives = 100/236 (42%), Gaps = 25/236 (11%)

Query  154  FANSAIDRIVPNQPP------------NAGLNVRIEKFYEWTVEQTPFGEFGHPDIPAIH  201
            F N+ +DRIVP                   L V +E F +W +E          +   + 
Sbjct  5    FPNTMVDRIVPATTDDELAKIAQALGVEDPLPVTVEPFRQWVIEDNFVKGRPLLEKVGVE  64

Query  202  WVDDLKPYIERKLFTVNTGHATTAYYGHMRGKKMIADALADAEIRQIVHKVLEQTAKLIT  261
            +V+D+ PY ERKL  +N GHAT AY G++ G + I +A+ D EIR  V  V+ +    + 
Sbjct  65   YVEDVDPYEERKLRILNGGHATLAYLGYLAGYQTIHEAMLDPEIRAFVKGVMTEEVAPLL  124

Query  262  TKHEITEQEQNEYVDTIVKRMSNPFLEDNVERVGR-----APLRKLSRNERFIGPASQ--  314
             K      +   Y D I++R SNP+++D V RV R      P RKL    R I       
Sbjct  125  AKVP--GDDLEAYADKIIERFSNPYIKDTVWRVARDGSQKLPQRKLPSLRRHIRAGPLPE  182

Query  315  -LAEKGLPFDALLGSIEMALRFQNVPGDEESAELAKILKEMSAEEATGKLTGLEKH  369
             LA     +   L  ++    +   P D ++ EL      + A+E    +      
Sbjct  183  LLALGVAGWMRYLQGVDEGGNY-IDPEDPQAQELQA--AAIIAKERPAAVLAEVSG  235


>CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossmann domain. 
 
Length=151

 Score = 70.9 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 65/149 (44%), Gaps = 28/149 (19%)

Query  4    KAIQFGGGNIGRGFVA---EFLHEAGYEVVFIDVVDKIIDA---LKSTPSYEVT-EVSEE  56
            + + FG GN  R   A   + L E G++   +DV  +++DA   L +        E  EE
Sbjct  2    RIVHFGAGNFHRAHQAFIGDLLAENGFDWGIVDVNLRVVDAREALNAQDGLYTVIEDGEE  61

Query  57   GEKTKTITNYRAINSKTNE-EDVVKEI--GTADVVTCAVGP----------NVLKFIAPV  103
            G + + + +  A+NS   + E +++ +    AD+V+  V            N L  IA  
Sbjct  62   GRQARLVGSVNAVNSVEEDLEALIELMAEPQADIVSTTVTEGGIDATGQLDNDLPDIAAD  121

Query  104  IAKGIDARTA--------SKPVAVIACEN  124
            +AK      A         KP+ +IAC+N
Sbjct  122  LAKPEYLVEALKRRRAAGLKPLTIIACDN  150



Lambda      K        H        a         alpha
   0.315    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00018014

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00018016

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00011979

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00011981

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00018017

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00011982

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00018018

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00011983

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.143    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00011984

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         97.3    6e-22


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 97.3 bits (243),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 86/481 (18%), Positives = 150/481 (31%), Gaps = 83/481 (17%)

Query  104  LEGYVLFSIGNVKPLFQAAFKSCWK----DHKICNPQWINAVEYLEIVGIIVGQILVGVL  159
            L GY    IG    L                   +      V     VG  +G +  G L
Sbjct  11   LFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIF-SVGCFIGSLFAGKL  69

Query  160  GDWIGRRWGLIQDASIMLLGLVMLVAAWGVNQNGWVICYAWSLFIYGIGVGGEYPMTATS  219
            GD  GR+  L+    + ++G V+  AA G   + + +       + GIGVGG   +    
Sbjct  70   GDRFGRKKSLLIANVLFVIGAVLQGAAKGKW-SVYQLIV--GRVLVGIGVGGASVLAPMY  126

Query  220  GMENAVGSGKVSTKEDRLHRGRKVTSAFLMQGWGQFFNQVILIILLLCFHHGSGNPPYSS  279
              E A        K     RG   +   L   +G     +  + L               
Sbjct  127  ISEIA------PKK----LRGALGSLYQLAITFGILLAYIFGLGLNKTS-----------  165

Query  280  VAAQWTYRISFAIPAVGTL--------------WLVY-------------YRTYHMKAAS  312
                  +RI   +  V  L              WLV               R        
Sbjct  166  --NSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRE  223

Query  313  KQLAAAKKKASVTGYDVTSLKLAFTH-FGFRIVATAGGWFA------NDVFFYGNKLFQS  365
                    +A       +  +L  T     R++              N +F+Y   +F  
Sbjct  224  LDEIKDSLEAGQEAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIF--  281

Query  366  EFIKVISPETTSIMPTWLWNLVNVGVSLAGYYLASFLIDNKLYGRKWMQIVGFLMDFILF  425
                    E   +  ++L  ++   V+    ++A FL+D   +GR+ + ++G     I F
Sbjct  282  --------ENLGLSDSFLVTIIVGVVNFVFTFIAIFLVD--RFGRRPLLLLGAAGMAICF  331

Query  426  IVPA--FHFQYYREPAHIKAFQAMYFLSSFFNQFGPNSVTFLVAAEVFPTPIRATAHGLS  483
            ++          +             L   F   G   V +++ +E+FP  +R+ A  L+
Sbjct  332  VILGIVALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALA  391

Query  484  AAAGKLGALLASVLYNYIDTQTKFYVVPWF----GLAGVVLTYLFLPDTTGLDLKEQERR  539
             AA  L   L   L+  I          +      +  ++  + F+P+T G  L+E +  
Sbjct  392  TAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDEL  451

Query  540  W  540
            +
Sbjct  452  F  452



Lambda      K        H        a         alpha
   0.323    0.139    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 845054670


Query= TCONS_00011985

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         74.6    6e-15


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 74.6 bits (184),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 38/194 (20%), Positives = 77/194 (40%), Gaps = 18/194 (9%)

Query  139  NDVFFYGNKLFQSEFIKVISPETTSIMPTWLWNLVNVGVSLAGYYLASFLIDNKLYGRKW  198
            N +F+Y   +F          E   +  ++L  ++   V+    ++A FL+D   +GR+ 
Sbjct  271  NAIFYYSTTIF----------ENLGLSDSFLVTIIVGVVNFVFTFIAIFLVD--RFGRRP  318

Query  199  MQIVGFLMDFILFIVPA--FHFQYYREPAHIKAFQAMYFLSSFFNQFGPNSVTFLVAAEV  256
            + ++G     I F++          +             L   F   G   V +++ +E+
Sbjct  319  LLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSEL  378

Query  257  FPTPIRATAHGLSAAAGKLGALLASVLYNYIDTQTKFYVVPWF----GLAGVVLTYLFLP  312
            FP  +R+ A  L+ AA  L   L   L+  I          +      +  ++  + F+P
Sbjct  379  FPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVP  438

Query  313  DTTGLDLKEQERRW  326
            +T G  L+E +  +
Sbjct  439  ETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.323    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0773    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00018019

Length=377


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 447362496


Query= TCONS_00018020

Length=377


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 447362496


Query= TCONS_00011987

Length=442


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 539863808


Query= TCONS_00011988

Length=545


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 687385964


Query= TCONS_00018021

Length=436


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00018022

Length=539


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 678301568


Query= TCONS_00011989

Length=421


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00018023

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00018024

Length=471


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00011990

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00011991

Length=516


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00011993

Length=537


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00011992

Length=522


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 652562446


Query= TCONS_00011994

Length=465


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 575139000


Query= TCONS_00011995

Length=1323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395085 pfam00136, DNA_pol_B, DNA polymerase family B. This re...  434     8e-141
CDD:462651 pfam08996, zf-DNA_Pol, DNA Polymerase alpha zinc finge...  305     1e-96 
CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, ex...  155     5e-42 


>CDD:395085 pfam00136, DNA_pol_B, DNA polymerase family B.  This region of 
DNA polymerase B appears to consist of more than one structural 
domain, possibly including elongation, DNA-binding and 
dNTP binding activities.
Length=439

 Score = 434 bits (1119),  Expect = 8e-141, Method: Composition-based stats.
 Identities = 159/464 (34%), Positives = 243/464 (52%), Gaps = 42/464 (9%)

Query  643   NSWARTLSGTRAERNEYILLHEFHRNKYICPDKYSSKLQKAEEKNQDGDDDDAGDKKKKD  702
                +R L G +  R E  LL       +I PD+  S     +                  
Sbjct  1     IPQSRVLEGGQQIRVESCLLRLALEEGFILPDR-PSAKGDEDGY----------------  43

Query  703   KYKGGLVFEPEKGLYDKFVLVMDFNSLYPSIIQEYNICFTTVDRTATAENENEEKVPEV-  761
               +G  V EP+KG YDK VLV+DFNSLYPSIIQ +N+C+TT+ R+    N    +   + 
Sbjct  44    --QGATVIEPKKGFYDKPVLVLDFNSLYPSIIQAHNLCYTTLVRSVDEANNLPPEDNLIT  101

Query  762   ----------PSSDQEQGILPKLIATLVGRRREVKKLMKSKSATPEQLALWDTKQLAFKL  811
                             +G+LPKL+  L+ +R+ +KKL+K     P + A+ D +QLA K+
Sbjct  102   VECTPRGVYFVKDHVREGLLPKLLKDLLAKRKAIKKLLKE-ETDPFERAILDKQQLALKI  160

Query  812   TANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELAESK---QLRVIYGDTDSVMI  868
             TANS+YG  G+   R    P+A   T  GRE+L +TK+L E       RVIYGDTDSV I
Sbjct  161   TANSVYGFTGFANGRLPCLPIAASVTAIGREMLENTKDLVEGMYTYNFRVIYGDTDSVFI  220

Query  869   NTNMDTISDALKVGEEFKKSVNE-RYRL-LEIDIDNIFRRLLLHAKKKYAAINMTEVDGK  926
                   + +A+K+G+E  + VN+  ++  ++++ + +++ LLL +KKKYA +        
Sbjct  221   EFGGKDVEEAMKIGDELAEHVNQDLFKSPIKLEFEKVYKPLLLISKKKYAGL-KYTAPSN  279

Query  927   FVDKLEVKGLDMKRREYCALSKEVSQKLLNEILSGEDQELVLNRVHDYLRDLADKMRGYQ  986
             F +KL++KG+D+ RR+ C L KEV +K+L+ +LS     + L  V   L D    +R  +
Sbjct  280   F-NKLDMKGVDLVRRDNCPLVKEVIKKVLDLLLSDRGLPVGLEFVISILNDARSDLRNNK  338

Query  987   IPVQKYVIYTKLSKRPEEYPNKETMPPAQVALRELAR-GKTIRPNDVISYIVTNGDSETS  1045
             +P++K+VI  +LSK P+ Y +K  +P  +VALR   R G+     D I Y++        
Sbjct  339   VPLEKFVISKELSKPPDNYKSK-NLPHVEVALRMNKRNGEAPEVGDRIPYVIVKAAKGLK  397

Query  1046  SLPPAKRSYTVHDVMKSDNNLKPDIEFYLLKQIFPPIERLCAPI  1089
             +L   +R+         +NNL  D E+Y   Q+ PP+ RL  PI
Sbjct  398   NLLIYERAE--DPEYVLENNLPIDYEYYFSNQLIPPVARLLEPI  439


>CDD:462651 pfam08996, zf-DNA_Pol, DNA Polymerase alpha zinc finger.  The 
DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like 
structure, followed by three turns, all of which involve 
proline. The resulting motif is a helix-turn-helix motif, 
in contrast to other zinc finger domains, which show anti-parallel 
sheet and helix conformation. Zinc binding occurs 
due to the presence of four cysteine residues positioned to 
bind the metal centre in a tetrahedral coordination geometry. 
Function of this domain is uncertain: it has been proposed 
that the zinc finger motif may be an essential part of the 
DNA binding domain.
Length=184

 Score = 305 bits (783),  Expect = 1e-96, Method: Composition-based stats.
 Identities = 106/193 (55%), Positives = 127/193 (66%), Gaps = 11/193 (6%)

Query  1128  SQIPDSVRFENAARLTLTCRSCKEKSIFEGLVASTH--MCTANGIVCPNQACQKPFTVLT  1185
             SQI D  RF++   L L C SC  +  FEG+ AS      T +G+ CPN  C    +  +
Sbjct  1     SQISDEERFKDCEPLELRCPSCGTEFEFEGVFASADGYSVTPSGLRCPN--CDASLSPAS  58

Query  1186  IIAQLESQIRAQTSKYYEGWLVCDDSACGNRTRQMSVYGHRCLGPRGRAEGCLGRMTYEY  1245
             ++ QLE QIRA  S+YYEGWLVCDD  CGNRTRQMSVYG RCLGP     GC GRM YEY
Sbjct  59    LVNQLELQIRAHISRYYEGWLVCDDPTCGNRTRQMSVYGKRCLGP-----GCKGRMRYEY  113

Query  1246  SEKQMYNQLLYFAGLWDVDKAKVNAQKEASGEKKDSIAALVEFNRTRFGTIKGVVDGYLK  1305
             S+KQ+YNQLLYFA L+DVDKAK    K    E ++ + AL E NR  F T+K VVD YL 
Sbjct  114   SDKQLYNQLLYFASLFDVDKAKKKLLKSE--ESREKVLALAEQNRELFKTLKSVVDKYLD  171

Query  1306  KCGRQWVEMDALF  1318
             KCGR+WV + +LF
Sbjct  172   KCGRRWVNLSSLF  184


>CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease 
domain.  This domain has 3' to 5' exonuclease activity and 
adopts a ribonuclease H type fold.
Length=333

 Score = 155 bits (394),  Expect = 5e-42, Method: Composition-based stats.
 Identities = 77/356 (22%), Positives = 133/356 (37%), Gaps = 39/356 (11%)

Query  234  HVSAFVKIDNILRKLFFLPREYRYKHGRVTDEEVDMKDVYEEVDEIMSRLKVGMHKIKPC  293
             VS  V +       + L  +       + +   ++K++YE +D+I         ++K  
Sbjct  5    GVSVCVNVFGFKPYFYCLAPD----GKELEEVIEEIKELYEGLDKIEKI------ELKLK  54

Query  294  TRKYAFELPDIPKEAEYLKLLYPYDKPALPMET--KGETFSHVFGTNTSLFEQFVLWRNV  351
               Y +E   +P    YLK+ +   +P L +      E  S V+  +    E+F++  ++
Sbjct  55   KSLYGYEEDPVP----YLKVSFANPRPLLKIRKYLSPENISDVYEYDVDYLERFLIDNDI  110

Query  352  MGPCWLKIEDADFTAVSNASWCKFECQVARPACITPVPDTENLEPPPLTLMSLAFRTQ--  409
            +G  W K++   F A    S C  E     P  I+   +    E PPL ++S        
Sbjct  111  VGFGWYKVKVYPFRAEGRISNCDVEIDCDSPDLISVPFEK---EWPPLRVLSFDIECTSL  167

Query  410  ----LNVKENKQEILVASARVYENVSLTDTTPPEKLPCKTFTVMRPVGS-SYPLHFEAET  464
                 + +  K  I+  S  +           PE  P   FT+            +  + 
Sbjct  168  PGKFPDAENVKDPIIQISCMLD------GQGEPEPEPRFLFTLRECDSEDIEDFEYTPKP  221

Query  465  RKQRGTFMLEKSEQFLLSKFLALFEKMDPDVLMGHQLQEVDLSIFLSRLKEKKTPGWHRI  524
                       SE+ LL +F     + DPD++ G+     D    L+R KE        I
Sbjct  222  IYPGVKVFEFPSEKELLRRFFEFIRQYDPDIITGYNGDNFDWPYILNRAKELYIVKLSSI  281

Query  525  GRLKRGEWPKSFNKGGGFF---AERHLIAGRLMCDVANDMGKSLMMKCQSWSLTEM  577
            GRL R    +S  +  GF     E+  I+GRL  D+   + +    K  S+ L  +
Sbjct  282  GRLNR--GGRSKVREIGFGTRSYEKVKISGRLHLDLYRVIKRDY--KLPSYKLNAV  333



Lambda      K        H        a         alpha
   0.317    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1686335000


Query= TCONS_00018025

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462651 pfam08996, zf-DNA_Pol, DNA Polymerase alpha zinc finge...  296     2e-102


>CDD:462651 pfam08996, zf-DNA_Pol, DNA Polymerase alpha zinc finger.  The 
DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like 
structure, followed by three turns, all of which involve 
proline. The resulting motif is a helix-turn-helix motif, 
in contrast to other zinc finger domains, which show anti-parallel 
sheet and helix conformation. Zinc binding occurs 
due to the presence of four cysteine residues positioned to 
bind the metal centre in a tetrahedral coordination geometry. 
Function of this domain is uncertain: it has been proposed 
that the zinc finger motif may be an essential part of the 
DNA binding domain.
Length=184

 Score = 296 bits (759),  Expect = 2e-102, Method: Composition-based stats.
 Identities = 106/193 (55%), Positives = 127/193 (66%), Gaps = 11/193 (6%)

Query  118  SQIPDSVRFENAARLTLTCRSCKEKSIFEGLVASTH--MCTANGIVCPNQACQKPFTVLT  175
            SQI D  RF++   L L C SC  +  FEG+ AS      T +G+ CPN  C    +  +
Sbjct  1    SQISDEERFKDCEPLELRCPSCGTEFEFEGVFASADGYSVTPSGLRCPN--CDASLSPAS  58

Query  176  IIAQLESQIRAQTSKYYEGWLVCDDSACGNRTRQMSVYGHRCLGPRGRAEGCLGRMTYEY  235
            ++ QLE QIRA  S+YYEGWLVCDD  CGNRTRQMSVYG RCLGP     GC GRM YEY
Sbjct  59   LVNQLELQIRAHISRYYEGWLVCDDPTCGNRTRQMSVYGKRCLGP-----GCKGRMRYEY  113

Query  236  SEKQMYNQLLYFAGLWDVDKAKVNAQKEASGEKKDSIAALVEFNRTRFGTIKGVVDGYLK  295
            S+KQ+YNQLLYFA L+DVDKAK    K    E ++ + AL E NR  F T+K VVD YL 
Sbjct  114  SDKQLYNQLLYFASLFDVDKAKKKLLKSE--ESREKVLALAEQNRELFKTLKSVVDKYLD  171

Query  296  KCGRQWVEMDALF  308
            KCGR+WV + +LF
Sbjct  172  KCGRRWVNLSSLF  184



Lambda      K        H        a         alpha
   0.320    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00011996

Length=758
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395085 pfam00136, DNA_pol_B, DNA polymerase family B. This re...  430     6e-145
CDD:462651 pfam08996, zf-DNA_Pol, DNA Polymerase alpha zinc finge...  298     8e-98 


>CDD:395085 pfam00136, DNA_pol_B, DNA polymerase family B.  This region of 
DNA polymerase B appears to consist of more than one structural 
domain, possibly including elongation, DNA-binding and 
dNTP binding activities.
Length=439

 Score = 430 bits (1108),  Expect = 6e-145, Method: Composition-based stats.
 Identities = 159/464 (34%), Positives = 243/464 (52%), Gaps = 42/464 (9%)

Query  78   NSWARTLSGTRAERNEYILLHEFHRNKYICPDKYSSKLQKAEEKNQDGDDDDAGDKKKKD  137
               +R L G +  R E  LL       +I PD+  S     +                  
Sbjct  1    IPQSRVLEGGQQIRVESCLLRLALEEGFILPDR-PSAKGDEDGY----------------  43

Query  138  KYKGGLVFEPEKGLYDKFVLVMDFNSLYPSIIQEYNICFTTVDRTATAENENEEKVPEV-  196
              +G  V EP+KG YDK VLV+DFNSLYPSIIQ +N+C+TT+ R+    N    +   + 
Sbjct  44   --QGATVIEPKKGFYDKPVLVLDFNSLYPSIIQAHNLCYTTLVRSVDEANNLPPEDNLIT  101

Query  197  ----------PSSDQEQGILPKLIATLVGRRREVKKLMKSKSATPEQLALWDTKQLAFKL  246
                            +G+LPKL+  L+ +R+ +KKL+K     P + A+ D +QLA K+
Sbjct  102  VECTPRGVYFVKDHVREGLLPKLLKDLLAKRKAIKKLLKE-ETDPFERAILDKQQLALKI  160

Query  247  TANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELAESK---QLRVIYGDTDSVMI  303
            TANS+YG  G+   R    P+A   T  GRE+L +TK+L E       RVIYGDTDSV I
Sbjct  161  TANSVYGFTGFANGRLPCLPIAASVTAIGREMLENTKDLVEGMYTYNFRVIYGDTDSVFI  220

Query  304  NTNMDTISDALKVGEEFKKSVNE-RYRL-LEIDIDNIFRRLLLHAKKKYAAINMTEVDGK  361
                  + +A+K+G+E  + VN+  ++  ++++ + +++ LLL +KKKYA +        
Sbjct  221  EFGGKDVEEAMKIGDELAEHVNQDLFKSPIKLEFEKVYKPLLLISKKKYAGL-KYTAPSN  279

Query  362  FVDKLEVKGLDMKRREYCALSKEVSQKLLNEILSGEDQELVLNRVHDYLRDLADKMRGYQ  421
            F +KL++KG+D+ RR+ C L KEV +K+L+ +LS     + L  V   L D    +R  +
Sbjct  280  F-NKLDMKGVDLVRRDNCPLVKEVIKKVLDLLLSDRGLPVGLEFVISILNDARSDLRNNK  338

Query  422  IPVQKYVIYTKLSKRPEEYPNKETMPPAQVALRELAR-GKTIRPNDVISYIVTNGDSETS  480
            +P++K+VI  +LSK P+ Y +K  +P  +VALR   R G+     D I Y++        
Sbjct  339  VPLEKFVISKELSKPPDNYKSK-NLPHVEVALRMNKRNGEAPEVGDRIPYVIVKAAKGLK  397

Query  481  SLPPAKRSYTVHDVMKSDNNLKPDIEFYLLKQIFPPIERLCAPI  524
            +L   +R+         +NNL  D E+Y   Q+ PP+ RL  PI
Sbjct  398  NLLIYERAE--DPEYVLENNLPIDYEYYFSNQLIPPVARLLEPI  439


>CDD:462651 pfam08996, zf-DNA_Pol, DNA Polymerase alpha zinc finger.  The 
DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like 
structure, followed by three turns, all of which involve 
proline. The resulting motif is a helix-turn-helix motif, 
in contrast to other zinc finger domains, which show anti-parallel 
sheet and helix conformation. Zinc binding occurs 
due to the presence of four cysteine residues positioned to 
bind the metal centre in a tetrahedral coordination geometry. 
Function of this domain is uncertain: it has been proposed 
that the zinc finger motif may be an essential part of the 
DNA binding domain.
Length=184

 Score = 298 bits (766),  Expect = 8e-98, Method: Composition-based stats.
 Identities = 106/193 (55%), Positives = 127/193 (66%), Gaps = 11/193 (6%)

Query  563  SQIPDSVRFENAARLTLTCRSCKEKSIFEGLVASTH--MCTANGIVCPNQACQKPFTVLT  620
            SQI D  RF++   L L C SC  +  FEG+ AS      T +G+ CPN  C    +  +
Sbjct  1    SQISDEERFKDCEPLELRCPSCGTEFEFEGVFASADGYSVTPSGLRCPN--CDASLSPAS  58

Query  621  IIAQLESQIRAQTSKYYEGWLVCDDSACGNRTRQMSVYGHRCLGPRGRAEGCLGRMTYEY  680
            ++ QLE QIRA  S+YYEGWLVCDD  CGNRTRQMSVYG RCLGP     GC GRM YEY
Sbjct  59   LVNQLELQIRAHISRYYEGWLVCDDPTCGNRTRQMSVYGKRCLGP-----GCKGRMRYEY  113

Query  681  SEKQMYNQLLYFAGLWDVDKAKVNAQKEASGEKKDSIAALVEFNRTRFGTIKGVVDGYLK  740
            S+KQ+YNQLLYFA L+DVDKAK    K    E ++ + AL E NR  F T+K VVD YL 
Sbjct  114  SDKQLYNQLLYFASLFDVDKAKKKLLKSE--ESREKVLALAEQNRELFKTLKSVVDKYLD  171

Query  741  KCGRQWVEMDALF  753
            KCGR+WV + +LF
Sbjct  172  KCGRRWVNLSSLF  184



Lambda      K        H        a         alpha
   0.318    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 966220928


Query= TCONS_00011997

Length=1140
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395085 pfam00136, DNA_pol_B, DNA polymerase family B. This re...  370     3e-118
CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, ex...  154     1e-41 
CDD:463508 pfam12254, DNA_pol_alpha_N, DNA polymerase alpha subun...  115     2e-31 


>CDD:395085 pfam00136, DNA_pol_B, DNA polymerase family B.  This region of 
DNA polymerase B appears to consist of more than one structural 
domain, possibly including elongation, DNA-binding and 
dNTP binding activities.
Length=439

 Score = 370 bits (953),  Expect = 3e-118, Method: Composition-based stats.
 Identities = 128/368 (35%), Positives = 197/368 (54%), Gaps = 38/368 (10%)

Query  782   NSWARTLSGTRAERNEYILLHEFHRNKYICPDKYSSKLQKAEEKNQDGDDDDAGDKKKKD  841
                +R L G +  R E  LL       +I PD+  S     +                  
Sbjct  1     IPQSRVLEGGQQIRVESCLLRLALEEGFILPDR-PSAKGDEDGY----------------  43

Query  842   KYKGGLVFEPEKGLYDKFVLVMDFNSLYPSIIQEYNICFTTVDRTATAENENEEKVPEV-  900
               +G  V EP+KG YDK VLV+DFNSLYPSIIQ +N+C+TT+ R+    N    +   + 
Sbjct  44    --QGATVIEPKKGFYDKPVLVLDFNSLYPSIIQAHNLCYTTLVRSVDEANNLPPEDNLIT  101

Query  901   ----------PSSDQEQGILPKLIATLVGRRREVKKLMKSKSATPEQLALWDTKQLAFKL  950
                             +G+LPKL+  L+ +R+ +KKL+K     P + A+ D +QLA K+
Sbjct  102   VECTPRGVYFVKDHVREGLLPKLLKDLLAKRKAIKKLLKE-ETDPFERAILDKQQLALKI  160

Query  951   TANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELAESK---QLRVIYGDTDSVMI  1007
             TANS+YG  G+   R    P+A   T  GRE+L +TK+L E       RVIYGDTDSV I
Sbjct  161   TANSVYGFTGFANGRLPCLPIAASVTAIGREMLENTKDLVEGMYTYNFRVIYGDTDSVFI  220

Query  1008  NTNMDTISDALKVGEEFKKSVNE-RYRL-LEIDIDNIFRRLLLHAKKKYAAINMTEVDGK  1065
                   + +A+K+G+E  + VN+  ++  ++++ + +++ LLL +KKKYA +        
Sbjct  221   EFGGKDVEEAMKIGDELAEHVNQDLFKSPIKLEFEKVYKPLLLISKKKYAGL-KYTAPSN  279

Query  1066  FVDKLEVKGLDMKRREYCALSKEVSQKLLNEILSGEDQELVLNRVHDYLRDLADKMRGYQ  1125
             F +KL++KG+D+ RR+ C L KEV +K+L+ +LS     + L  V   L D    +R  +
Sbjct  280   F-NKLDMKGVDLVRRDNCPLVKEVIKKVLDLLLSDRGLPVGLEFVISILNDARSDLRNNK  338

Query  1126  IPVQKYVI  1133
             +P++K+VI
Sbjct  339   VPLEKFVI  346


>CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease 
domain.  This domain has 3' to 5' exonuclease activity and 
adopts a ribonuclease H type fold.
Length=333

 Score = 154 bits (391),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 77/356 (22%), Positives = 133/356 (37%), Gaps = 39/356 (11%)

Query  373  HVSAFVKIDNILRKLFFLPREYRYKHGRVTDEEVDMKDVYEEVDEIMSRLKVGMHKIKPC  432
             VS  V +       + L  +       + +   ++K++YE +D+I         ++K  
Sbjct  5    GVSVCVNVFGFKPYFYCLAPD----GKELEEVIEEIKELYEGLDKIEKI------ELKLK  54

Query  433  TRKYAFELPDIPKEAEYLKLLYPYDKPALPMET--KGETFSHVFGTNTSLFEQFVLWRNV  490
               Y +E   +P    YLK+ +   +P L +      E  S V+  +    E+F++  ++
Sbjct  55   KSLYGYEEDPVP----YLKVSFANPRPLLKIRKYLSPENISDVYEYDVDYLERFLIDNDI  110

Query  491  MGPCWLKIEDADFTAVSNASWCKFECQVARPACITPVPDTENLEPPPLTLMSLAFRTQ--  548
            +G  W K++   F A    S C  E     P  I+   +    E PPL ++S        
Sbjct  111  VGFGWYKVKVYPFRAEGRISNCDVEIDCDSPDLISVPFEK---EWPPLRVLSFDIECTSL  167

Query  549  ----LNVKENKQEILVASARVYENVSLTDTTPPEKLPCKTFTVMRPVGS-SYPLHFEAET  603
                 + +  K  I+  S  +           PE  P   FT+            +  + 
Sbjct  168  PGKFPDAENVKDPIIQISCMLD------GQGEPEPEPRFLFTLRECDSEDIEDFEYTPKP  221

Query  604  RKQRGTFMLEKSEQFLLSKFLALFEKMDPDVLMGHQLQEVDLSIFLSRLKEKKTPGWHRI  663
                       SE+ LL +F     + DPD++ G+     D    L+R KE        I
Sbjct  222  IYPGVKVFEFPSEKELLRRFFEFIRQYDPDIITGYNGDNFDWPYILNRAKELYIVKLSSI  281

Query  664  GRLKRGEWPKSFNKGGGFF---AERHLIAGRLMCDVANDMGKSLMMKCQSWSLTEM  716
            GRL R    +S  +  GF     E+  I+GRL  D+   + +    K  S+ L  +
Sbjct  282  GRLNR--GGRSKVREIGFGTRSYEKVKISGRLHLDLYRVIKRDY--KLPSYKLNAV  333


>CDD:463508 pfam12254, DNA_pol_alpha_N, DNA polymerase alpha subunit p180 
N terminal.  This domain family is found in eukaryotes, and 
is approximately 70 amino acids in length. The family is found 
in association with pfam00136, pfam08996, pfam03104. This 
family is the N terminal of DNA polymerase alpha subunit p180 
protein. The N terminal contains the catalytic region of 
the alpha subunit.
Length=65

 Score = 115 bits (291),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 42/65 (65%), Positives = 52/65 (80%), Gaps = 0/65 (0%)

Query  8   LAELRALRAAGKKRLSTYEIEEQDDIFEEVDDEGYKKIIRDRLDQDDFVVDDNGEGYADD  67
           L +L+A RA GK+RL  YE EE +DI++EVD+E Y+KI+R RL  DDFVVDD+GEGY DD
Sbjct  1   LEKLKAARAGGKRRLDEYESEEDEDIYDEVDEEEYRKIVRKRLLDDDFVVDDDGEGYVDD  60

Query  68  GREVW  72
           GRE W
Sbjct  61  GREDW  65



Lambda      K        H        a         alpha
   0.315    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1456276234


Query= TCONS_00011998

Length=1462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395085 pfam00136, DNA_pol_B, DNA polymerase family B. This re...  434     1e-139
CDD:462651 pfam08996, zf-DNA_Pol, DNA Polymerase alpha zinc finge...  306     2e-96 
CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, ex...  155     7e-42 
CDD:463508 pfam12254, DNA_pol_alpha_N, DNA polymerase alpha subun...  117     6e-32 


>CDD:395085 pfam00136, DNA_pol_B, DNA polymerase family B.  This region of 
DNA polymerase B appears to consist of more than one structural 
domain, possibly including elongation, DNA-binding and 
dNTP binding activities.
Length=439

 Score = 434 bits (1118),  Expect = 1e-139, Method: Composition-based stats.
 Identities = 159/464 (34%), Positives = 243/464 (52%), Gaps = 42/464 (9%)

Query  782   NSWARTLSGTRAERNEYILLHEFHRNKYICPDKYSSKLQKAEEKNQDGDDDDAGDKKKKD  841
                +R L G +  R E  LL       +I PD+  S     +                  
Sbjct  1     IPQSRVLEGGQQIRVESCLLRLALEEGFILPDR-PSAKGDEDGY----------------  43

Query  842   KYKGGLVFEPEKGLYDKFVLVMDFNSLYPSIIQEYNICFTTVDRTATAENENEEKVPEV-  900
               +G  V EP+KG YDK VLV+DFNSLYPSIIQ +N+C+TT+ R+    N    +   + 
Sbjct  44    --QGATVIEPKKGFYDKPVLVLDFNSLYPSIIQAHNLCYTTLVRSVDEANNLPPEDNLIT  101

Query  901   ----------PSSDQEQGILPKLIATLVGRRREVKKLMKSKSATPEQLALWDTKQLAFKL  950
                             +G+LPKL+  L+ +R+ +KKL+K     P + A+ D +QLA K+
Sbjct  102   VECTPRGVYFVKDHVREGLLPKLLKDLLAKRKAIKKLLKE-ETDPFERAILDKQQLALKI  160

Query  951   TANSMYGCLGYTQSRFYARPLAMLTTFKGREILRSTKELAESK---QLRVIYGDTDSVMI  1007
             TANS+YG  G+   R    P+A   T  GRE+L +TK+L E       RVIYGDTDSV I
Sbjct  161   TANSVYGFTGFANGRLPCLPIAASVTAIGREMLENTKDLVEGMYTYNFRVIYGDTDSVFI  220

Query  1008  NTNMDTISDALKVGEEFKKSVNE-RYRL-LEIDIDNIFRRLLLHAKKKYAAINMTEVDGK  1065
                   + +A+K+G+E  + VN+  ++  ++++ + +++ LLL +KKKYA +        
Sbjct  221   EFGGKDVEEAMKIGDELAEHVNQDLFKSPIKLEFEKVYKPLLLISKKKYAGL-KYTAPSN  279

Query  1066  FVDKLEVKGLDMKRREYCALSKEVSQKLLNEILSGEDQELVLNRVHDYLRDLADKMRGYQ  1125
             F +KL++KG+D+ RR+ C L KEV +K+L+ +LS     + L  V   L D    +R  +
Sbjct  280   F-NKLDMKGVDLVRRDNCPLVKEVIKKVLDLLLSDRGLPVGLEFVISILNDARSDLRNNK  338

Query  1126  IPVQKYVIYTKLSKRPEEYPNKETMPPAQVALRELAR-GKTIRPNDVISYIVTNGDSETS  1184
             +P++K+VI  +LSK P+ Y +K  +P  +VALR   R G+     D I Y++        
Sbjct  339   VPLEKFVISKELSKPPDNYKSK-NLPHVEVALRMNKRNGEAPEVGDRIPYVIVKAAKGLK  397

Query  1185  SLPPAKRSYTVHDVMKSDNNLKPDIEFYLLKQIFPPIERLCAPI  1228
             +L   +R+         +NNL  D E+Y   Q+ PP+ RL  PI
Sbjct  398   NLLIYERAE--DPEYVLENNLPIDYEYYFSNQLIPPVARLLEPI  439


>CDD:462651 pfam08996, zf-DNA_Pol, DNA Polymerase alpha zinc finger.  The 
DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like 
structure, followed by three turns, all of which involve 
proline. The resulting motif is a helix-turn-helix motif, 
in contrast to other zinc finger domains, which show anti-parallel 
sheet and helix conformation. Zinc binding occurs 
due to the presence of four cysteine residues positioned to 
bind the metal centre in a tetrahedral coordination geometry. 
Function of this domain is uncertain: it has been proposed 
that the zinc finger motif may be an essential part of the 
DNA binding domain.
Length=184

 Score = 306 bits (785),  Expect = 2e-96, Method: Composition-based stats.
 Identities = 106/193 (55%), Positives = 127/193 (66%), Gaps = 11/193 (6%)

Query  1267  SQIPDSVRFENAARLTLTCRSCKEKSIFEGLVASTH--MCTANGIVCPNQACQKPFTVLT  1324
             SQI D  RF++   L L C SC  +  FEG+ AS      T +G+ CPN  C    +  +
Sbjct  1     SQISDEERFKDCEPLELRCPSCGTEFEFEGVFASADGYSVTPSGLRCPN--CDASLSPAS  58

Query  1325  IIAQLESQIRAQTSKYYEGWLVCDDSACGNRTRQMSVYGHRCLGPRGRAEGCLGRMTYEY  1384
             ++ QLE QIRA  S+YYEGWLVCDD  CGNRTRQMSVYG RCLGP     GC GRM YEY
Sbjct  59    LVNQLELQIRAHISRYYEGWLVCDDPTCGNRTRQMSVYGKRCLGP-----GCKGRMRYEY  113

Query  1385  SEKQMYNQLLYFAGLWDVDKAKVNAQKEASGEKKDSIAALVEFNRTRFGTIKGVVDGYLK  1444
             S+KQ+YNQLLYFA L+DVDKAK    K    E ++ + AL E NR  F T+K VVD YL 
Sbjct  114   SDKQLYNQLLYFASLFDVDKAKKKLLKSE--ESREKVLALAEQNRELFKTLKSVVDKYLD  171

Query  1445  KCGRQWVEMDALF  1457
             KCGR+WV + +LF
Sbjct  172   KCGRRWVNLSSLF  184


>CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease 
domain.  This domain has 3' to 5' exonuclease activity and 
adopts a ribonuclease H type fold.
Length=333

 Score = 155 bits (393),  Expect = 7e-42, Method: Composition-based stats.
 Identities = 77/356 (22%), Positives = 133/356 (37%), Gaps = 39/356 (11%)

Query  373  HVSAFVKIDNILRKLFFLPREYRYKHGRVTDEEVDMKDVYEEVDEIMSRLKVGMHKIKPC  432
             VS  V +       + L  +       + +   ++K++YE +D+I         ++K  
Sbjct  5    GVSVCVNVFGFKPYFYCLAPD----GKELEEVIEEIKELYEGLDKIEKI------ELKLK  54

Query  433  TRKYAFELPDIPKEAEYLKLLYPYDKPALPMET--KGETFSHVFGTNTSLFEQFVLWRNV  490
               Y +E   +P    YLK+ +   +P L +      E  S V+  +    E+F++  ++
Sbjct  55   KSLYGYEEDPVP----YLKVSFANPRPLLKIRKYLSPENISDVYEYDVDYLERFLIDNDI  110

Query  491  MGPCWLKIEDADFTAVSNASWCKFECQVARPACITPVPDTENLEPPPLTLMSLAFRTQ--  548
            +G  W K++   F A    S C  E     P  I+   +    E PPL ++S        
Sbjct  111  VGFGWYKVKVYPFRAEGRISNCDVEIDCDSPDLISVPFEK---EWPPLRVLSFDIECTSL  167

Query  549  ----LNVKENKQEILVASARVYENVSLTDTTPPEKLPCKTFTVMRPVGS-SYPLHFEAET  603
                 + +  K  I+  S  +           PE  P   FT+            +  + 
Sbjct  168  PGKFPDAENVKDPIIQISCMLD------GQGEPEPEPRFLFTLRECDSEDIEDFEYTPKP  221

Query  604  RKQRGTFMLEKSEQFLLSKFLALFEKMDPDVLMGHQLQEVDLSIFLSRLKEKKTPGWHRI  663
                       SE+ LL +F     + DPD++ G+     D    L+R KE        I
Sbjct  222  IYPGVKVFEFPSEKELLRRFFEFIRQYDPDIITGYNGDNFDWPYILNRAKELYIVKLSSI  281

Query  664  GRLKRGEWPKSFNKGGGFF---AERHLIAGRLMCDVANDMGKSLMMKCQSWSLTEM  716
            GRL R    +S  +  GF     E+  I+GRL  D+   + +    K  S+ L  +
Sbjct  282  GRLNR--GGRSKVREIGFGTRSYEKVKISGRLHLDLYRVIKRDY--KLPSYKLNAV  333


>CDD:463508 pfam12254, DNA_pol_alpha_N, DNA polymerase alpha subunit p180 
N terminal.  This domain family is found in eukaryotes, and 
is approximately 70 amino acids in length. The family is found 
in association with pfam00136, pfam08996, pfam03104. This 
family is the N terminal of DNA polymerase alpha subunit p180 
protein. The N terminal contains the catalytic region of 
the alpha subunit.
Length=65

 Score = 117 bits (295),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 42/65 (65%), Positives = 52/65 (80%), Gaps = 0/65 (0%)

Query  8   LAELRALRAAGKKRLSTYEIEEQDDIFEEVDDEGYKKIIRDRLDQDDFVVDDNGEGYADD  67
           L +L+A RA GK+RL  YE EE +DI++EVD+E Y+KI+R RL  DDFVVDD+GEGY DD
Sbjct  1   LEKLKAARAGGKRRLDEYESEEDEDIYDEVDEEEYRKIVRKRLLDDDFVVDDDGEGYVDD  60

Query  68  GREVW  72
           GRE W
Sbjct  61  GREDW  65



Lambda      K        H        a         alpha
   0.316    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1849539206


Query= TCONS_00018026

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinas...  322     6e-109
CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family. Members...  176     6e-53 


>CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase.  This 
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) 
synthesis pathway, TPP is an essential cofactor for many 
enzymes.
Length=246

 Score = 322 bits (828),  Expect = 6e-109, Method: Composition-based stats.
 Identities = 121/264 (46%), Positives = 170/264 (64%), Gaps = 18/264 (7%)

Query  13   DSSGGAGLEADQRVLAAHGVYALTATTGLTAQNTLGVQDIFIVPAQFVKKQINAGLEDVG  72
            DSSGGAG++AD +  +A GVY ++  T LTAQNTLGVQ +  +P +FV  Q++A LED+ 
Sbjct  1    DSSGGAGIQADLKTFSALGVYGMSVITALTAQNTLGVQGVHPLPPEFVAAQLDAVLEDIP  60

Query  73   ADVVKLGMLSSEETIDVIAEALTTHRIACVVLDPVMVSTSGSQLLPEAAVQSLRTKLLPL  132
             D VK GML S E I+ +AE L  + +  VVLDPVMV+ SG  LL + A+++L+ +LLPL
Sbjct  61   VDAVKTGMLGSAEIIEAVAEKLDKYGV-PVVLDPVMVAKSGDSLLDDEAIEALKEELLPL  119

Query  133  TTILTPNIPEAILLLKDAGVDVQLPKDLSELTQLAKQVRALGPKTVLLKGGHLPLTAAHE  192
             T++TPN+PEA  L    G  +   K L ++ + AK++ ALG K VL+KGGHL       
Sbjct  120  ATLITPNLPEAEALT---GRKI---KTLEDMKEAAKKLLALGAKAVLIKGGHL-------  166

Query  193  AAQNPEDASRVIDILYDGENTTLFETEFLMSKNTHGTGCSLASAIAANLALGKDMKRAVH  252
                  + + V D+LYDG      E   + +KNTHGTGC+L++AIAANLA G  +  AV 
Sbjct  167  ----EGEEAVVTDVLYDGGGFYTLEAPRIPTKNTHGTGCTLSAAIAANLAKGLSLPEAVR  222

Query  253  SAVRFVEAGIKTSVDMGKGSGPIN  276
             A  +V   I+ ++++GKG GP+N
Sbjct  223  EAKEYVTEAIRDALNLGKGHGPVN  246


>CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family.  Members of this 
family are found in all the three major phyla of life: archaebacteria, 
eubacteria, and eukaryotes. In Bacillus subtilis, 
TENA is one of a number of proteins that enhance the expression 
of extracellular enzymes, such as alkaline protease, 
neutral protease and levansucrase. The THI-4 protein, which 
is involved in thiamine biosynthesis, is also a member of this 
family. The C-terminal part of these proteins consistently 
show significant sequence similarity to TENA proteins. This 
similarity was first noted with the Neurospora crassa THI-4. 
This family includes bacterial coenzyme PQQ synthesis protein 
C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is 
the prosthetic group of several bacterial enzymes,including 
methanol dehydrogenase of methylotrophs and the glucose dehydrogenase 
of a number of bacteria. PQQC has been found to be 
required in the synthesis of PQQ but its function is unclear. 
The exact molecular function of members of this family is 
uncertain.
Length=210

 Score = 176 bits (449),  Expect = 6e-53, Method: Composition-based stats.
 Identities = 85/210 (40%), Positives = 116/210 (55%), Gaps = 2/210 (1%)

Query  298  RPDVRPIWKKFTEHEFVHGLGSGKLPVERFKQYLVQDYLYLVHFARSNSLAAYKAKSMAS  357
             P +RPIWK +  H FV  L  G LP E+F+ Y++QDYLYLV+FAR  ++ A K+  +  
Sbjct  1    HPQLRPIWKFYINHPFVQALAKGTLPREQFQGYVIQDYLYLVNFARVLAIIASKSPDLEV  60

Query  358  -VAASAKIVLHIERETALHLDYCASFGLSKAEMESYPESLACTAYSRYILDVGQSEDWLA  416
                  +IV H   E  LHL    + GLS+ ++ +Y    A  AY RY+LD  +   WL 
Sbjct  61   RREWENRIVDHDGNEIELHLRLAEALGLSREDLSAYKPLPATRAYVRYLLDFARRGSWLE  120

Query  417  LQMALAPCLIGYGAIAKRLYTEKETLREGNRYWRWIENYVAEDYTEAVRLGSELLETHIR  476
               AL PCL  Y  IA RL  EK    EG  Y+ W++ Y +E +  AV     LL+  + 
Sbjct  121  AVAALLPCLFVYQEIASRL-GEKIRALEGPEYYEWVKTYASEYFRAAVEEAKRLLDRLLA  179

Query  477  QVSPSRMEELIKIFIRATELEISFWDMGLG  506
             VS  ++EEL +IF++A E E SFW M L 
Sbjct  180  YVSDEQLEELQEIFLKALEFEYSFWTMALD  209



Lambda      K        H        a         alpha
   0.318    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00011999

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinas...  192     1e-59
CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family. Members...  173     1e-52


>CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase.  This 
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) 
synthesis pathway, TPP is an essential cofactor for many 
enzymes.
Length=246

 Score = 192 bits (491),  Expect = 1e-59, Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 104/169 (62%), Gaps = 17/169 (10%)

Query  1    MVSTSGSQLLPEAAVQSLRTKLLPLTTILTPNIPEAILLLKDAGVDVQLPKDLSELTQLA  60
            MV+ SG  LL + A+++L+ +LLPL T++TPN+PEA  L    G  +   K L ++ + A
Sbjct  95   MVAKSGDSLLDDEAIEALKEELLPLATLITPNLPEAEALT---GRKI---KTLEDMKEAA  148

Query  61   KQVRALGPKTVLLKGGHLPLTAAHEAAQNPEDASRVIDILYDGENTTLFETEFLMSKNTH  120
            K++ ALG K VL+KGGHL             + + V D+LYDG      E   + +KNTH
Sbjct  149  KKLLALGAKAVLIKGGHLE-----------GEEAVVTDVLYDGGGFYTLEAPRIPTKNTH  197

Query  121  GTGCSLASAIAANLALGKDMKRAVHSAVRFVEAGIKTSVDMGKGSGPIN  169
            GTGC+L++AIAANLA G  +  AV  A  +V   I+ ++++GKG GP+N
Sbjct  198  GTGCTLSAAIAANLAKGLSLPEAVREAKEYVTEAIRDALNLGKGHGPVN  246


>CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family.  Members of this 
family are found in all the three major phyla of life: archaebacteria, 
eubacteria, and eukaryotes. In Bacillus subtilis, 
TENA is one of a number of proteins that enhance the expression 
of extracellular enzymes, such as alkaline protease, 
neutral protease and levansucrase. The THI-4 protein, which 
is involved in thiamine biosynthesis, is also a member of this 
family. The C-terminal part of these proteins consistently 
show significant sequence similarity to TENA proteins. This 
similarity was first noted with the Neurospora crassa THI-4. 
This family includes bacterial coenzyme PQQ synthesis protein 
C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is 
the prosthetic group of several bacterial enzymes,including 
methanol dehydrogenase of methylotrophs and the glucose dehydrogenase 
of a number of bacteria. PQQC has been found to be 
required in the synthesis of PQQ but its function is unclear. 
The exact molecular function of members of this family is 
uncertain.
Length=210

 Score = 173 bits (440),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 85/210 (40%), Positives = 116/210 (55%), Gaps = 2/210 (1%)

Query  191  RPDVRPIWKKFTEHEFVHGLGSGKLPVERFKQYLVQDYLYLVHFARSNSLAAYKAKSMAS  250
             P +RPIWK +  H FV  L  G LP E+F+ Y++QDYLYLV+FAR  ++ A K+  +  
Sbjct  1    HPQLRPIWKFYINHPFVQALAKGTLPREQFQGYVIQDYLYLVNFARVLAIIASKSPDLEV  60

Query  251  -VAASAKIVLHIERETALHLDYCASFGLSKAEMESYPESLACTAYSRYILDVGQSEDWLA  309
                  +IV H   E  LHL    + GLS+ ++ +Y    A  AY RY+LD  +   WL 
Sbjct  61   RREWENRIVDHDGNEIELHLRLAEALGLSREDLSAYKPLPATRAYVRYLLDFARRGSWLE  120

Query  310  LQMALAPCLIGYGAIAKRLYTEKETLREGNRYWRWIENYVAEDYTEAVRLGSELLETHIR  369
               AL PCL  Y  IA RL  EK    EG  Y+ W++ Y +E +  AV     LL+  + 
Sbjct  121  AVAALLPCLFVYQEIASRL-GEKIRALEGPEYYEWVKTYASEYFRAAVEEAKRLLDRLLA  179

Query  370  QVSPSRMEELIKIFIRATELEISFWDMGLG  399
             VS  ++EEL +IF++A E E SFW M L 
Sbjct  180  YVSDEQLEELQEIFLKALEFEYSFWTMALD  209



Lambda      K        H        a         alpha
   0.319    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500176124


Query= TCONS_00018028

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinas...  322     6e-109
CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family. Members...  172     2e-51 


>CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase.  This 
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) 
synthesis pathway, TPP is an essential cofactor for many 
enzymes.
Length=246

 Score = 322 bits (828),  Expect = 6e-109, Method: Composition-based stats.
 Identities = 121/264 (46%), Positives = 170/264 (64%), Gaps = 18/264 (7%)

Query  13   DSSGGAGLEADQRVLAAHGVYALTATTGLTAQNTLGVQDIFIVPAQFVKKQINAGLEDVG  72
            DSSGGAG++AD +  +A GVY ++  T LTAQNTLGVQ +  +P +FV  Q++A LED+ 
Sbjct  1    DSSGGAGIQADLKTFSALGVYGMSVITALTAQNTLGVQGVHPLPPEFVAAQLDAVLEDIP  60

Query  73   ADVVKLGMLSSEETIDVIAEALTTHRIACVVLDPVMVSTSGSQLLPEAAVQSLRTKLLPL  132
             D VK GML S E I+ +AE L  + +  VVLDPVMV+ SG  LL + A+++L+ +LLPL
Sbjct  61   VDAVKTGMLGSAEIIEAVAEKLDKYGV-PVVLDPVMVAKSGDSLLDDEAIEALKEELLPL  119

Query  133  TTILTPNIPEAILLLKDAGVDVQLPKDLSELTQLAKQVRALGPKTVLLKGGHLPLTAAHE  192
             T++TPN+PEA  L    G  +   K L ++ + AK++ ALG K VL+KGGHL       
Sbjct  120  ATLITPNLPEAEALT---GRKI---KTLEDMKEAAKKLLALGAKAVLIKGGHL-------  166

Query  193  AAQNPEDASRVIDILYDGENTTLFETEFLMSKNTHGTGCSLASAIAANLALGKDMKRAVH  252
                  + + V D+LYDG      E   + +KNTHGTGC+L++AIAANLA G  +  AV 
Sbjct  167  ----EGEEAVVTDVLYDGGGFYTLEAPRIPTKNTHGTGCTLSAAIAANLAKGLSLPEAVR  222

Query  253  SAVRFVEAGIKTSVDMGKGSGPIN  276
             A  +V   I+ ++++GKG GP+N
Sbjct  223  EAKEYVTEAIRDALNLGKGHGPVN  246


>CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family.  Members of this 
family are found in all the three major phyla of life: archaebacteria, 
eubacteria, and eukaryotes. In Bacillus subtilis, 
TENA is one of a number of proteins that enhance the expression 
of extracellular enzymes, such as alkaline protease, 
neutral protease and levansucrase. The THI-4 protein, which 
is involved in thiamine biosynthesis, is also a member of this 
family. The C-terminal part of these proteins consistently 
show significant sequence similarity to TENA proteins. This 
similarity was first noted with the Neurospora crassa THI-4. 
This family includes bacterial coenzyme PQQ synthesis protein 
C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is 
the prosthetic group of several bacterial enzymes,including 
methanol dehydrogenase of methylotrophs and the glucose dehydrogenase 
of a number of bacteria. PQQC has been found to be 
required in the synthesis of PQQ but its function is unclear. 
The exact molecular function of members of this family is 
uncertain.
Length=210

 Score = 172 bits (438),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 84/210 (40%), Positives = 115/210 (55%), Gaps = 2/210 (1%)

Query  298  RPDVRPIWKKFTEHEFVHGLGSGKLPVERFKQYLVQDYLYLVHFARSNSLAAYKAKSMAS  357
             P +RPIWK +  H FV  L  G LP E+F+ Y++QDYLYLV+FAR  ++ A K+  +  
Sbjct  1    HPQLRPIWKFYINHPFVQALAKGTLPREQFQGYVIQDYLYLVNFARVLAIIASKSPDLEV  60

Query  358  -VAASAKIVLHIERETALHLDYCASFGLSKAEMESYPESLGETAYSRYILDVGQSEDWLA  416
                  +IV H   E  LHL    + GLS+ ++ +Y       AY RY+LD  +   WL 
Sbjct  61   RREWENRIVDHDGNEIELHLRLAEALGLSREDLSAYKPLPATRAYVRYLLDFARRGSWLE  120

Query  417  LQMALAPCLIGYGAIAKRLYTEKETLREGNRYWRWIENYVAEDYTEAVRLGSELLETHIR  476
               AL PCL  Y  IA RL  EK    EG  Y+ W++ Y +E +  AV     LL+  + 
Sbjct  121  AVAALLPCLFVYQEIASRL-GEKIRALEGPEYYEWVKTYASEYFRAAVEEAKRLLDRLLA  179

Query  477  QVSPSRMEELIKIFIRATELEISFWDMGLG  506
             VS  ++EEL +IF++A E E SFW M L 
Sbjct  180  YVSDEQLEELQEIFLKALEFEYSFWTMALD  209



Lambda      K        H        a         alpha
   0.318    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00018027

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinas...  316     3e-109
CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family. Members...  58.9    8e-11 


>CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase.  This 
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) 
synthesis pathway, TPP is an essential cofactor for many 
enzymes.
Length=246

 Score = 316 bits (813),  Expect = 3e-109, Method: Composition-based stats.
 Identities = 121/264 (46%), Positives = 170/264 (64%), Gaps = 18/264 (7%)

Query  13   DSSGGAGLEADQRVLAAHGVYALTATTGLTAQNTLGVQDIFIVPAQFVKKQINAGLEDVG  72
            DSSGGAG++AD +  +A GVY ++  T LTAQNTLGVQ +  +P +FV  Q++A LED+ 
Sbjct  1    DSSGGAGIQADLKTFSALGVYGMSVITALTAQNTLGVQGVHPLPPEFVAAQLDAVLEDIP  60

Query  73   ADVVKLGMLSSEETIDVIAEALTTHRIACVVLDPVMVSTSGSQLLPEAAVQSLRTKLLPL  132
             D VK GML S E I+ +AE L  + +  VVLDPVMV+ SG  LL + A+++L+ +LLPL
Sbjct  61   VDAVKTGMLGSAEIIEAVAEKLDKYGV-PVVLDPVMVAKSGDSLLDDEAIEALKEELLPL  119

Query  133  TTILTPNIPEAILLLKDAGVDVQLPKDLSELTQLAKQVRALGPKTVLLKGGHLPLTAAHE  192
             T++TPN+PEA  L    G  +   K L ++ + AK++ ALG K VL+KGGHL       
Sbjct  120  ATLITPNLPEAEALT---GRKI---KTLEDMKEAAKKLLALGAKAVLIKGGHL-------  166

Query  193  AAQNPEDASRVIDILYDGENTTLFETEFLMSKNTHGTGCSLASAIAANLALGKDMKRAVH  252
                  + + V D+LYDG      E   + +KNTHGTGC+L++AIAANLA G  +  AV 
Sbjct  167  ----EGEEAVVTDVLYDGGGFYTLEAPRIPTKNTHGTGCTLSAAIAANLAKGLSLPEAVR  222

Query  253  SAVRFVEAGIKTSVDMGKGSGPIN  276
             A  +V   I+ ++++GKG GP+N
Sbjct  223  EAKEYVTEAIRDALNLGKGHGPVN  246


>CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family.  Members of this 
family are found in all the three major phyla of life: archaebacteria, 
eubacteria, and eukaryotes. In Bacillus subtilis, 
TENA is one of a number of proteins that enhance the expression 
of extracellular enzymes, such as alkaline protease, 
neutral protease and levansucrase. The THI-4 protein, which 
is involved in thiamine biosynthesis, is also a member of this 
family. The C-terminal part of these proteins consistently 
show significant sequence similarity to TENA proteins. This 
similarity was first noted with the Neurospora crassa THI-4. 
This family includes bacterial coenzyme PQQ synthesis protein 
C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is 
the prosthetic group of several bacterial enzymes,including 
methanol dehydrogenase of methylotrophs and the glucose dehydrogenase 
of a number of bacteria. PQQC has been found to be 
required in the synthesis of PQQ but its function is unclear. 
The exact molecular function of members of this family is 
uncertain.
Length=210

 Score = 58.9 bits (143),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 0/43 (0%)

Query  298  RPDVRPIWKKFTEHEFVHGLGSGKLPVERFKQYLVQDYLYLVR  340
             P +RPIWK +  H FV  L  G LP E+F+ Y++QDYLYLV 
Sbjct  1    HPQLRPIWKFYINHPFVQALAKGTLPREQFQGYVIQDYLYLVN  43



Lambda      K        H        a         alpha
   0.318    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00012001

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinas...  192     1e-59
CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family. Members...  166     4e-50


>CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase.  This 
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) 
synthesis pathway, TPP is an essential cofactor for many 
enzymes.
Length=246

 Score = 192 bits (491),  Expect = 1e-59, Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 104/169 (62%), Gaps = 17/169 (10%)

Query  1    MVSTSGSQLLPEAAVQSLRTKLLPLTTILTPNIPEAILLLKDAGVDVQLPKDLSELTQLA  60
            MV+ SG  LL + A+++L+ +LLPL T++TPN+PEA  L    G  +   K L ++ + A
Sbjct  95   MVAKSGDSLLDDEAIEALKEELLPLATLITPNLPEAEALT---GRKI---KTLEDMKEAA  148

Query  61   KQVRALGPKTVLLKGGHLPLTAAHEAAQNPEDASRVIDILYDGENTTLFETEFLMSKNTH  120
            K++ ALG K VL+KGGHL             + + V D+LYDG      E   + +KNTH
Sbjct  149  KKLLALGAKAVLIKGGHLE-----------GEEAVVTDVLYDGGGFYTLEAPRIPTKNTH  197

Query  121  GTGCSLASAIAANLALGKDMKRAVHSAVRFVEAGIKTSVDMGKGSGPIN  169
            GTGC+L++AIAANLA G  +  AV  A  +V   I+ ++++GKG GP+N
Sbjct  198  GTGCTLSAAIAANLAKGLSLPEAVREAKEYVTEAIRDALNLGKGHGPVN  246


>CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family.  Members of this 
family are found in all the three major phyla of life: archaebacteria, 
eubacteria, and eukaryotes. In Bacillus subtilis, 
TENA is one of a number of proteins that enhance the expression 
of extracellular enzymes, such as alkaline protease, 
neutral protease and levansucrase. The THI-4 protein, which 
is involved in thiamine biosynthesis, is also a member of this 
family. The C-terminal part of these proteins consistently 
show significant sequence similarity to TENA proteins. This 
similarity was first noted with the Neurospora crassa THI-4. 
This family includes bacterial coenzyme PQQ synthesis protein 
C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is 
the prosthetic group of several bacterial enzymes,including 
methanol dehydrogenase of methylotrophs and the glucose dehydrogenase 
of a number of bacteria. PQQC has been found to be 
required in the synthesis of PQQ but its function is unclear. 
The exact molecular function of members of this family is 
uncertain.
Length=210

 Score = 166 bits (423),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 85/219 (39%), Positives = 114/219 (52%), Gaps = 14/219 (6%)

Query  191  RPDVRPIWKKFTEHEFVHGLGSGKLPVERFKQYLVQDYLYLVHFARSNSLAAYKAKS---  247
             P +RPIWK +  H FV  L  G LP E+F+ Y++QDYLYLV+FAR  ++ A K+     
Sbjct  1    HPQLRPIWKFYINHPFVQALAKGTLPREQFQGYVIQDYLYLVNFARVLAIIASKSPDLEV  60

Query  248  -MASVAAIVLHIERETALHLDYCASFGLSKAEMESYPESLACTAYSRYILDVGQSEDWLA  306
                   IV H   E  LHL    + GLS+ ++ +Y    A  AY RY+LD  +   WL 
Sbjct  61   RREWENRIVDHDGNEIELHLRLAEALGLSREDLSAYKPLPATRAYVRYLLDFARRGSWLE  120

Query  307  LQMALAPCLIGYGAIAKRLYTEKETLREGNRYWRWIENYVAEDYTEAVRLGSVYVADRSV  366
               AL PCL  Y  IA RL  EK    EG  Y+ W++ Y +E +  AV            
Sbjct  121  AVAALLPCLFVYQEIASRL-GEKIRALEGPEYYEWVKTYASEYFRAAV---------EEA  170

Query  367  LELLETHIRQVSPSRMEELIKIFIRATELEISFWDMGLG  405
              LL+  +  VS  ++EEL +IF++A E E SFW M L 
Sbjct  171  KRLLDRLLAYVSDEQLEELQEIFLKALEFEYSFWTMALD  209



Lambda      K        H        a         alpha
   0.319    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00012002

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinas...  190     1e-60
CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family. Members...  73.9    2e-16


>CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase.  This 
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) 
synthesis pathway, TPP is an essential cofactor for many 
enzymes.
Length=246

 Score = 190 bits (486),  Expect = 1e-60, Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 104/169 (62%), Gaps = 17/169 (10%)

Query  1    MVSTSGSQLLPEAAVQSLRTKLLPLTTILTPNIPEAILLLKDAGVDVQLPKDLSELTQLA  60
            MV+ SG  LL + A+++L+ +LLPL T++TPN+PEA  L    G  +   K L ++ + A
Sbjct  95   MVAKSGDSLLDDEAIEALKEELLPLATLITPNLPEAEALT---GRKI---KTLEDMKEAA  148

Query  61   KQVRALGPKTVLLKGGHLPLTAAHEAAQNPEDASRVIDILYDGENTTLFETEFLMSKNTH  120
            K++ ALG K VL+KGGHL             + + V D+LYDG      E   + +KNTH
Sbjct  149  KKLLALGAKAVLIKGGHLE-----------GEEAVVTDVLYDGGGFYTLEAPRIPTKNTH  197

Query  121  GTGCSLASAIAANLALGKDMKRAVHSAVRFVEAGIKTSVDMGKGSGPIN  169
            GTGC+L++AIAANLA G  +  AV  A  +V   I+ ++++GKG GP+N
Sbjct  198  GTGCTLSAAIAANLAKGLSLPEAVREAKEYVTEAIRDALNLGKGHGPVN  246


>CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family.  Members of this 
family are found in all the three major phyla of life: archaebacteria, 
eubacteria, and eukaryotes. In Bacillus subtilis, 
TENA is one of a number of proteins that enhance the expression 
of extracellular enzymes, such as alkaline protease, 
neutral protease and levansucrase. The THI-4 protein, which 
is involved in thiamine biosynthesis, is also a member of this 
family. The C-terminal part of these proteins consistently 
show significant sequence similarity to TENA proteins. This 
similarity was first noted with the Neurospora crassa THI-4. 
This family includes bacterial coenzyme PQQ synthesis protein 
C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is 
the prosthetic group of several bacterial enzymes,including 
methanol dehydrogenase of methylotrophs and the glucose dehydrogenase 
of a number of bacteria. PQQC has been found to be 
required in the synthesis of PQQ but its function is unclear. 
The exact molecular function of members of this family is 
uncertain.
Length=210

 Score = 73.9 bits (182),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 0/59 (0%)

Query  191  RPDVRPIWKKFTEHEFVHGLGSGKLPVERFKQYLVQDYLYLVHFARSNSLAAYKAKSMA  249
             P +RPIWK +  H FV  L  G LP E+F+ Y++QDYLYLV+FAR  ++ A K+  + 
Sbjct  1    HPQLRPIWKFYINHPFVQALAKGTLPREQFQGYVIQDYLYLVNFARVLAIIASKSPDLE  59



Lambda      K        H        a         alpha
   0.318    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00018029

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinas...  317     5e-109
CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family. Members...  74.3    5e-16 


>CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase.  This 
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) 
synthesis pathway, TPP is an essential cofactor for many 
enzymes.
Length=246

 Score = 317 bits (816),  Expect = 5e-109, Method: Composition-based stats.
 Identities = 121/264 (46%), Positives = 170/264 (64%), Gaps = 18/264 (7%)

Query  13   DSSGGAGLEADQRVLAAHGVYALTATTGLTAQNTLGVQDIFIVPAQFVKKQINAGLEDVG  72
            DSSGGAG++AD +  +A GVY ++  T LTAQNTLGVQ +  +P +FV  Q++A LED+ 
Sbjct  1    DSSGGAGIQADLKTFSALGVYGMSVITALTAQNTLGVQGVHPLPPEFVAAQLDAVLEDIP  60

Query  73   ADVVKLGMLSSEETIDVIAEALTTHRIACVVLDPVMVSTSGSQLLPEAAVQSLRTKLLPL  132
             D VK GML S E I+ +AE L  + +  VVLDPVMV+ SG  LL + A+++L+ +LLPL
Sbjct  61   VDAVKTGMLGSAEIIEAVAEKLDKYGV-PVVLDPVMVAKSGDSLLDDEAIEALKEELLPL  119

Query  133  TTILTPNIPEAILLLKDAGVDVQLPKDLSELTQLAKQVRALGPKTVLLKGGHLPLTAAHE  192
             T++TPN+PEA  L    G  +   K L ++ + AK++ ALG K VL+KGGHL       
Sbjct  120  ATLITPNLPEAEALT---GRKI---KTLEDMKEAAKKLLALGAKAVLIKGGHL-------  166

Query  193  AAQNPEDASRVIDILYDGENTTLFETEFLMSKNTHGTGCSLASAIAANLALGKDMKRAVH  252
                  + + V D+LYDG      E   + +KNTHGTGC+L++AIAANLA G  +  AV 
Sbjct  167  ----EGEEAVVTDVLYDGGGFYTLEAPRIPTKNTHGTGCTLSAAIAANLAKGLSLPEAVR  222

Query  253  SAVRFVEAGIKTSVDMGKGSGPIN  276
             A  +V   I+ ++++GKG GP+N
Sbjct  223  EAKEYVTEAIRDALNLGKGHGPVN  246


>CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family.  Members of this 
family are found in all the three major phyla of life: archaebacteria, 
eubacteria, and eukaryotes. In Bacillus subtilis, 
TENA is one of a number of proteins that enhance the expression 
of extracellular enzymes, such as alkaline protease, 
neutral protease and levansucrase. The THI-4 protein, which 
is involved in thiamine biosynthesis, is also a member of this 
family. The C-terminal part of these proteins consistently 
show significant sequence similarity to TENA proteins. This 
similarity was first noted with the Neurospora crassa THI-4. 
This family includes bacterial coenzyme PQQ synthesis protein 
C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is 
the prosthetic group of several bacterial enzymes,including 
methanol dehydrogenase of methylotrophs and the glucose dehydrogenase 
of a number of bacteria. PQQC has been found to be 
required in the synthesis of PQQ but its function is unclear. 
The exact molecular function of members of this family is 
uncertain.
Length=210

 Score = 74.3 bits (183),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 0/59 (0%)

Query  298  RPDVRPIWKKFTEHEFVHGLGSGKLPVERFKQYLVQDYLYLVHFARSNSLAAYKAKSMA  356
             P +RPIWK +  H FV  L  G LP E+F+ Y++QDYLYLV+FAR  ++ A K+  + 
Sbjct  1    HPQLRPIWKFYINHPFVQALAKGTLPREQFQGYVIQDYLYLVNFARVLAIIASKSPDLE  59



Lambda      K        H        a         alpha
   0.318    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00012000

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinas...  322     6e-109
CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family. Members...  176     6e-53 


>CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase.  This 
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) 
synthesis pathway, TPP is an essential cofactor for many 
enzymes.
Length=246

 Score = 322 bits (828),  Expect = 6e-109, Method: Composition-based stats.
 Identities = 121/264 (46%), Positives = 170/264 (64%), Gaps = 18/264 (7%)

Query  13   DSSGGAGLEADQRVLAAHGVYALTATTGLTAQNTLGVQDIFIVPAQFVKKQINAGLEDVG  72
            DSSGGAG++AD +  +A GVY ++  T LTAQNTLGVQ +  +P +FV  Q++A LED+ 
Sbjct  1    DSSGGAGIQADLKTFSALGVYGMSVITALTAQNTLGVQGVHPLPPEFVAAQLDAVLEDIP  60

Query  73   ADVVKLGMLSSEETIDVIAEALTTHRIACVVLDPVMVSTSGSQLLPEAAVQSLRTKLLPL  132
             D VK GML S E I+ +AE L  + +  VVLDPVMV+ SG  LL + A+++L+ +LLPL
Sbjct  61   VDAVKTGMLGSAEIIEAVAEKLDKYGV-PVVLDPVMVAKSGDSLLDDEAIEALKEELLPL  119

Query  133  TTILTPNIPEAILLLKDAGVDVQLPKDLSELTQLAKQVRALGPKTVLLKGGHLPLTAAHE  192
             T++TPN+PEA  L    G  +   K L ++ + AK++ ALG K VL+KGGHL       
Sbjct  120  ATLITPNLPEAEALT---GRKI---KTLEDMKEAAKKLLALGAKAVLIKGGHL-------  166

Query  193  AAQNPEDASRVIDILYDGENTTLFETEFLMSKNTHGTGCSLASAIAANLALGKDMKRAVH  252
                  + + V D+LYDG      E   + +KNTHGTGC+L++AIAANLA G  +  AV 
Sbjct  167  ----EGEEAVVTDVLYDGGGFYTLEAPRIPTKNTHGTGCTLSAAIAANLAKGLSLPEAVR  222

Query  253  SAVRFVEAGIKTSVDMGKGSGPIN  276
             A  +V   I+ ++++GKG GP+N
Sbjct  223  EAKEYVTEAIRDALNLGKGHGPVN  246


>CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family.  Members of this 
family are found in all the three major phyla of life: archaebacteria, 
eubacteria, and eukaryotes. In Bacillus subtilis, 
TENA is one of a number of proteins that enhance the expression 
of extracellular enzymes, such as alkaline protease, 
neutral protease and levansucrase. The THI-4 protein, which 
is involved in thiamine biosynthesis, is also a member of this 
family. The C-terminal part of these proteins consistently 
show significant sequence similarity to TENA proteins. This 
similarity was first noted with the Neurospora crassa THI-4. 
This family includes bacterial coenzyme PQQ synthesis protein 
C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is 
the prosthetic group of several bacterial enzymes,including 
methanol dehydrogenase of methylotrophs and the glucose dehydrogenase 
of a number of bacteria. PQQC has been found to be 
required in the synthesis of PQQ but its function is unclear. 
The exact molecular function of members of this family is 
uncertain.
Length=210

 Score = 176 bits (449),  Expect = 6e-53, Method: Composition-based stats.
 Identities = 85/210 (40%), Positives = 116/210 (55%), Gaps = 2/210 (1%)

Query  298  RPDVRPIWKKFTEHEFVHGLGSGKLPVERFKQYLVQDYLYLVHFARSNSLAAYKAKSMAS  357
             P +RPIWK +  H FV  L  G LP E+F+ Y++QDYLYLV+FAR  ++ A K+  +  
Sbjct  1    HPQLRPIWKFYINHPFVQALAKGTLPREQFQGYVIQDYLYLVNFARVLAIIASKSPDLEV  60

Query  358  -VAASAKIVLHIERETALHLDYCASFGLSKAEMESYPESLACTAYSRYILDVGQSEDWLA  416
                  +IV H   E  LHL    + GLS+ ++ +Y    A  AY RY+LD  +   WL 
Sbjct  61   RREWENRIVDHDGNEIELHLRLAEALGLSREDLSAYKPLPATRAYVRYLLDFARRGSWLE  120

Query  417  LQMALAPCLIGYGAIAKRLYTEKETLREGNRYWRWIENYVAEDYTEAVRLGSELLETHIR  476
               AL PCL  Y  IA RL  EK    EG  Y+ W++ Y +E +  AV     LL+  + 
Sbjct  121  AVAALLPCLFVYQEIASRL-GEKIRALEGPEYYEWVKTYASEYFRAAVEEAKRLLDRLLA  179

Query  477  QVSPSRMEELIKIFIRATELEISFWDMGLG  506
             VS  ++EEL +IF++A E E SFW M L 
Sbjct  180  YVSDEQLEELQEIFLKALEFEYSFWTMALD  209



Lambda      K        H        a         alpha
   0.318    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00012003

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinas...  190     3e-61
CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family. Members...  58.9    3e-11


>CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase.  This 
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) 
synthesis pathway, TPP is an essential cofactor for many 
enzymes.
Length=246

 Score = 190 bits (485),  Expect = 3e-61, Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 104/169 (62%), Gaps = 17/169 (10%)

Query  1    MVSTSGSQLLPEAAVQSLRTKLLPLTTILTPNIPEAILLLKDAGVDVQLPKDLSELTQLA  60
            MV+ SG  LL + A+++L+ +LLPL T++TPN+PEA  L    G  +   K L ++ + A
Sbjct  95   MVAKSGDSLLDDEAIEALKEELLPLATLITPNLPEAEALT---GRKI---KTLEDMKEAA  148

Query  61   KQVRALGPKTVLLKGGHLPLTAAHEAAQNPEDASRVIDILYDGENTTLFETEFLMSKNTH  120
            K++ ALG K VL+KGGHL             + + V D+LYDG      E   + +KNTH
Sbjct  149  KKLLALGAKAVLIKGGHLE-----------GEEAVVTDVLYDGGGFYTLEAPRIPTKNTH  197

Query  121  GTGCSLASAIAANLALGKDMKRAVHSAVRFVEAGIKTSVDMGKGSGPIN  169
            GTGC+L++AIAANLA G  +  AV  A  +V   I+ ++++GKG GP+N
Sbjct  198  GTGCTLSAAIAANLAKGLSLPEAVREAKEYVTEAIRDALNLGKGHGPVN  246


>CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family.  Members of this 
family are found in all the three major phyla of life: archaebacteria, 
eubacteria, and eukaryotes. In Bacillus subtilis, 
TENA is one of a number of proteins that enhance the expression 
of extracellular enzymes, such as alkaline protease, 
neutral protease and levansucrase. The THI-4 protein, which 
is involved in thiamine biosynthesis, is also a member of this 
family. The C-terminal part of these proteins consistently 
show significant sequence similarity to TENA proteins. This 
similarity was first noted with the Neurospora crassa THI-4. 
This family includes bacterial coenzyme PQQ synthesis protein 
C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is 
the prosthetic group of several bacterial enzymes,including 
methanol dehydrogenase of methylotrophs and the glucose dehydrogenase 
of a number of bacteria. PQQC has been found to be 
required in the synthesis of PQQ but its function is unclear. 
The exact molecular function of members of this family is 
uncertain.
Length=210

 Score = 58.9 bits (143),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 0/43 (0%)

Query  191  RPDVRPIWKKFTEHEFVHGLGSGKLPVERFKQYLVQDYLYLVR  233
             P +RPIWK +  H FV  L  G LP E+F+ Y++QDYLYLV 
Sbjct  1    HPQLRPIWKFYINHPFVQALAKGTLPREQFQGYVIQDYLYLVN  43



Lambda      K        H        a         alpha
   0.318    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00012004

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinas...  193     5e-60
CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family. Members...  146     1e-42


>CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase.  This 
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) 
synthesis pathway, TPP is an essential cofactor for many 
enzymes.
Length=246

 Score = 193 bits (492),  Expect = 5e-60, Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 104/169 (62%), Gaps = 17/169 (10%)

Query  1    MVSTSGSQLLPEAAVQSLRTKLLPLTTILTPNIPEAILLLKDAGVDVQLPKDLSELTQLA  60
            MV+ SG  LL + A+++L+ +LLPL T++TPN+PEA  L    G  +   K L ++ + A
Sbjct  95   MVAKSGDSLLDDEAIEALKEELLPLATLITPNLPEAEALT---GRKI---KTLEDMKEAA  148

Query  61   KQVRALGPKTVLLKGGHLPLTAAHEAAQNPEDASRVIDILYDGENTTLFETEFLMSKNTH  120
            K++ ALG K VL+KGGHL             + + V D+LYDG      E   + +KNTH
Sbjct  149  KKLLALGAKAVLIKGGHLE-----------GEEAVVTDVLYDGGGFYTLEAPRIPTKNTH  197

Query  121  GTGCSLASAIAANLALGKDMKRAVHSAVRFVEAGIKTSVDMGKGSGPIN  169
            GTGC+L++AIAANLA G  +  AV  A  +V   I+ ++++GKG GP+N
Sbjct  198  GTGCTLSAAIAANLAKGLSLPEAVREAKEYVTEAIRDALNLGKGHGPVN  246


>CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family.  Members of this 
family are found in all the three major phyla of life: archaebacteria, 
eubacteria, and eukaryotes. In Bacillus subtilis, 
TENA is one of a number of proteins that enhance the expression 
of extracellular enzymes, such as alkaline protease, 
neutral protease and levansucrase. The THI-4 protein, which 
is involved in thiamine biosynthesis, is also a member of this 
family. The C-terminal part of these proteins consistently 
show significant sequence similarity to TENA proteins. This 
similarity was first noted with the Neurospora crassa THI-4. 
This family includes bacterial coenzyme PQQ synthesis protein 
C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is 
the prosthetic group of several bacterial enzymes,including 
methanol dehydrogenase of methylotrophs and the glucose dehydrogenase 
of a number of bacteria. PQQC has been found to be 
required in the synthesis of PQQ but its function is unclear. 
The exact molecular function of members of this family is 
uncertain.
Length=210

 Score = 146 bits (370),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 79/219 (36%), Positives = 105/219 (48%), Gaps = 33/219 (15%)

Query  191  RPDVRPIWKKFTEHEFVHGLGSGKLPVERFKQYLVQDYLYL-------------------  231
             P +RPIWK +  H FV  L  G LP E+F+ Y++QDYLYL                   
Sbjct  1    HPQLRPIWKFYINHPFVQALAKGTLPREQFQGYVIQDYLYLVNFARVLAIIASKSPDLEV  60

Query  232  ----SAKIVLHIERETALHLDYCASFGLSKAEMESYPESLACTAYSRYILDVGQSEDWLA  287
                  +IV H   E  LHL    + GLS+ ++ +Y    A  AY RY+LD  +   WL 
Sbjct  61   RREWENRIVDHDGNEIELHLRLAEALGLSREDLSAYKPLPATRAYVRYLLDFARRGSWLE  120

Query  288  LQMALAPCLIGYGAIAKRLYTEKETLREGNRYWRWIENYVAEDYTEAVRLGSVYVADRSV  347
               AL PCL  Y  IA RL  EK    EG  Y+ W++ Y +E +  AV            
Sbjct  121  AVAALLPCLFVYQEIASRL-GEKIRALEGPEYYEWVKTYASEYFRAAV---------EEA  170

Query  348  LELLETHIRQVSPSRMEELIKIFIRATELEISFWDMGLG  386
              LL+  +  VS  ++EEL +IF++A E E SFW M L 
Sbjct  171  KRLLDRLLAYVSDEQLEELQEIFLKALEFEYSFWTMALD  209



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00012005

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinas...  193     3e-60
CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family. Members...  141     8e-41


>CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase.  This 
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) 
synthesis pathway, TPP is an essential cofactor for many 
enzymes.
Length=246

 Score = 193 bits (492),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 104/169 (62%), Gaps = 17/169 (10%)

Query  1    MVSTSGSQLLPEAAVQSLRTKLLPLTTILTPNIPEAILLLKDAGVDVQLPKDLSELTQLA  60
            MV+ SG  LL + A+++L+ +LLPL T++TPN+PEA  L    G  +   K L ++ + A
Sbjct  95   MVAKSGDSLLDDEAIEALKEELLPLATLITPNLPEAEALT---GRKI---KTLEDMKEAA  148

Query  61   KQVRALGPKTVLLKGGHLPLTAAHEAAQNPEDASRVIDILYDGENTTLFETEFLMSKNTH  120
            K++ ALG K VL+KGGHL             + + V D+LYDG      E   + +KNTH
Sbjct  149  KKLLALGAKAVLIKGGHLE-----------GEEAVVTDVLYDGGGFYTLEAPRIPTKNTH  197

Query  121  GTGCSLASAIAANLALGKDMKRAVHSAVRFVEAGIKTSVDMGKGSGPIN  169
            GTGC+L++AIAANLA G  +  AV  A  +V   I+ ++++GKG GP+N
Sbjct  198  GTGCTLSAAIAANLAKGLSLPEAVREAKEYVTEAIRDALNLGKGHGPVN  246


>CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family.  Members of this 
family are found in all the three major phyla of life: archaebacteria, 
eubacteria, and eukaryotes. In Bacillus subtilis, 
TENA is one of a number of proteins that enhance the expression 
of extracellular enzymes, such as alkaline protease, 
neutral protease and levansucrase. The THI-4 protein, which 
is involved in thiamine biosynthesis, is also a member of this 
family. The C-terminal part of these proteins consistently 
show significant sequence similarity to TENA proteins. This 
similarity was first noted with the Neurospora crassa THI-4. 
This family includes bacterial coenzyme PQQ synthesis protein 
C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is 
the prosthetic group of several bacterial enzymes,including 
methanol dehydrogenase of methylotrophs and the glucose dehydrogenase 
of a number of bacteria. PQQC has been found to be 
required in the synthesis of PQQ but its function is unclear. 
The exact molecular function of members of this family is 
uncertain.
Length=210

 Score = 141 bits (357),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 71/181 (39%), Positives = 95/181 (52%), Gaps = 4/181 (2%)

Query  191  RPDVRPIWKKFTEHEFVHGLGSGKLPVERFKQYLVQDYLYLVHFARSNSLAAYKAKSMAS  250
             P +RPIWK +  H FV  L  G LP E+F+ Y++QDYLYLV+FAR  ++ A K+  +  
Sbjct  1    HPQLRPIWKFYINHPFVQALAKGTLPREQFQGYVIQDYLYLVNFARVLAIIASKSPDLEV  60

Query  251  -VAASAKIVLHIERETALHLDYCASFGLSKAEMESYPESLACTAYSRYILDVGQSEDWLA  309
                  +IV H   E  LHL    + GLS+ ++ +Y    A  AY RY+LD  +   WL 
Sbjct  61   RREWENRIVDHDGNEIELHLRLAEALGLSREDLSAYKPLPATRAYVRYLLDFARRGSWLE  120

Query  310  LQMALAPCLIGYGAIAKRLYTEKETLREGNRYWRWIENYVAEDYTEAVRLGSGKNTFFFL  369
               AL PCL  Y  IA RL  EK    EG  Y+ W++ Y +E +  AV     K     L
Sbjct  121  AVAALLPCLFVYQEIASRL-GEKIRALEGPEYYEWVKTYASEYFRAAV--EEAKRLLDRL  177

Query  370  L  370
            L
Sbjct  178  L  178



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00012007

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinas...  322     8e-109
CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family. Members...  170     2e-50 


>CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase.  This 
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) 
synthesis pathway, TPP is an essential cofactor for many 
enzymes.
Length=246

 Score = 322 bits (828),  Expect = 8e-109, Method: Composition-based stats.
 Identities = 121/264 (46%), Positives = 170/264 (64%), Gaps = 18/264 (7%)

Query  13   DSSGGAGLEADQRVLAAHGVYALTATTGLTAQNTLGVQDIFIVPAQFVKKQINAGLEDVG  72
            DSSGGAG++AD +  +A GVY ++  T LTAQNTLGVQ +  +P +FV  Q++A LED+ 
Sbjct  1    DSSGGAGIQADLKTFSALGVYGMSVITALTAQNTLGVQGVHPLPPEFVAAQLDAVLEDIP  60

Query  73   ADVVKLGMLSSEETIDVIAEALTTHRIACVVLDPVMVSTSGSQLLPEAAVQSLRTKLLPL  132
             D VK GML S E I+ +AE L  + +  VVLDPVMV+ SG  LL + A+++L+ +LLPL
Sbjct  61   VDAVKTGMLGSAEIIEAVAEKLDKYGV-PVVLDPVMVAKSGDSLLDDEAIEALKEELLPL  119

Query  133  TTILTPNIPEAILLLKDAGVDVQLPKDLSELTQLAKQVRALGPKTVLLKGGHLPLTAAHE  192
             T++TPN+PEA  L    G  +   K L ++ + AK++ ALG K VL+KGGHL       
Sbjct  120  ATLITPNLPEAEALT---GRKI---KTLEDMKEAAKKLLALGAKAVLIKGGHL-------  166

Query  193  AAQNPEDASRVIDILYDGENTTLFETEFLMSKNTHGTGCSLASAIAANLALGKDMKRAVH  252
                  + + V D+LYDG      E   + +KNTHGTGC+L++AIAANLA G  +  AV 
Sbjct  167  ----EGEEAVVTDVLYDGGGFYTLEAPRIPTKNTHGTGCTLSAAIAANLAKGLSLPEAVR  222

Query  253  SAVRFVEAGIKTSVDMGKGSGPIN  276
             A  +V   I+ ++++GKG GP+N
Sbjct  223  EAKEYVTEAIRDALNLGKGHGPVN  246


>CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family.  Members of this 
family are found in all the three major phyla of life: archaebacteria, 
eubacteria, and eukaryotes. In Bacillus subtilis, 
TENA is one of a number of proteins that enhance the expression 
of extracellular enzymes, such as alkaline protease, 
neutral protease and levansucrase. The THI-4 protein, which 
is involved in thiamine biosynthesis, is also a member of this 
family. The C-terminal part of these proteins consistently 
show significant sequence similarity to TENA proteins. This 
similarity was first noted with the Neurospora crassa THI-4. 
This family includes bacterial coenzyme PQQ synthesis protein 
C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is 
the prosthetic group of several bacterial enzymes,including 
methanol dehydrogenase of methylotrophs and the glucose dehydrogenase 
of a number of bacteria. PQQC has been found to be 
required in the synthesis of PQQ but its function is unclear. 
The exact molecular function of members of this family is 
uncertain.
Length=210

 Score = 170 bits (432),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 85/219 (39%), Positives = 114/219 (52%), Gaps = 14/219 (6%)

Query  298  RPDVRPIWKKFTEHEFVHGLGSGKLPVERFKQYLVQDYLYLVHFARSNSLAAYKAKS---  354
             P +RPIWK +  H FV  L  G LP E+F+ Y++QDYLYLV+FAR  ++ A K+     
Sbjct  1    HPQLRPIWKFYINHPFVQALAKGTLPREQFQGYVIQDYLYLVNFARVLAIIASKSPDLEV  60

Query  355  -MASVAAIVLHIERETALHLDYCASFGLSKAEMESYPESLACTAYSRYILDVGQSEDWLA  413
                   IV H   E  LHL    + GLS+ ++ +Y    A  AY RY+LD  +   WL 
Sbjct  61   RREWENRIVDHDGNEIELHLRLAEALGLSREDLSAYKPLPATRAYVRYLLDFARRGSWLE  120

Query  414  LQMALAPCLIGYGAIAKRLYTEKETLREGNRYWRWIENYVAEDYTEAVRLGSVYVADRSV  473
               AL PCL  Y  IA RL  EK    EG  Y+ W++ Y +E +  AV            
Sbjct  121  AVAALLPCLFVYQEIASRL-GEKIRALEGPEYYEWVKTYASEYFRAAV---------EEA  170

Query  474  LELLETHIRQVSPSRMEELIKIFIRATELEISFWDMGLG  512
              LL+  +  VS  ++EEL +IF++A E E SFW M L 
Sbjct  171  KRLLDRLLAYVSDEQLEELQEIFLKALEFEYSFWTMALD  209



Lambda      K        H        a         alpha
   0.319    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00012006

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinas...  322     1e-108
CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family. Members...  171     7e-51 


>CDD:430062 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase.  This 
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate (TPP) 
synthesis pathway, TPP is an essential cofactor for many 
enzymes.
Length=246

 Score = 322 bits (828),  Expect = 1e-108, Method: Composition-based stats.
 Identities = 121/264 (46%), Positives = 170/264 (64%), Gaps = 18/264 (7%)

Query  13   DSSGGAGLEADQRVLAAHGVYALTATTGLTAQNTLGVQDIFIVPAQFVKKQINAGLEDVG  72
            DSSGGAG++AD +  +A GVY ++  T LTAQNTLGVQ +  +P +FV  Q++A LED+ 
Sbjct  1    DSSGGAGIQADLKTFSALGVYGMSVITALTAQNTLGVQGVHPLPPEFVAAQLDAVLEDIP  60

Query  73   ADVVKLGMLSSEETIDVIAEALTTHRIACVVLDPVMVSTSGSQLLPEAAVQSLRTKLLPL  132
             D VK GML S E I+ +AE L  + +  VVLDPVMV+ SG  LL + A+++L+ +LLPL
Sbjct  61   VDAVKTGMLGSAEIIEAVAEKLDKYGV-PVVLDPVMVAKSGDSLLDDEAIEALKEELLPL  119

Query  133  TTILTPNIPEAILLLKDAGVDVQLPKDLSELTQLAKQVRALGPKTVLLKGGHLPLTAAHE  192
             T++TPN+PEA  L    G  +   K L ++ + AK++ ALG K VL+KGGHL       
Sbjct  120  ATLITPNLPEAEALT---GRKI---KTLEDMKEAAKKLLALGAKAVLIKGGHL-------  166

Query  193  AAQNPEDASRVIDILYDGENTTLFETEFLMSKNTHGTGCSLASAIAANLALGKDMKRAVH  252
                  + + V D+LYDG      E   + +KNTHGTGC+L++AIAANLA G  +  AV 
Sbjct  167  ----EGEEAVVTDVLYDGGGFYTLEAPRIPTKNTHGTGCTLSAAIAANLAKGLSLPEAVR  222

Query  253  SAVRFVEAGIKTSVDMGKGSGPIN  276
             A  +V   I+ ++++GKG GP+N
Sbjct  223  EAKEYVTEAIRDALNLGKGHGPVN  246


>CDD:397272 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family.  Members of this 
family are found in all the three major phyla of life: archaebacteria, 
eubacteria, and eukaryotes. In Bacillus subtilis, 
TENA is one of a number of proteins that enhance the expression 
of extracellular enzymes, such as alkaline protease, 
neutral protease and levansucrase. The THI-4 protein, which 
is involved in thiamine biosynthesis, is also a member of this 
family. The C-terminal part of these proteins consistently 
show significant sequence similarity to TENA proteins. This 
similarity was first noted with the Neurospora crassa THI-4. 
This family includes bacterial coenzyme PQQ synthesis protein 
C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is 
the prosthetic group of several bacterial enzymes,including 
methanol dehydrogenase of methylotrophs and the glucose dehydrogenase 
of a number of bacteria. PQQC has been found to be 
required in the synthesis of PQQ but its function is unclear. 
The exact molecular function of members of this family is 
uncertain.
Length=210

 Score = 171 bits (435),  Expect = 7e-51, Method: Composition-based stats.
 Identities = 85/219 (39%), Positives = 116/219 (53%), Gaps = 11/219 (5%)

Query  298  RPDVRPIWKKFTEHEFVHGLGSGKLPVERFKQYLVQDYLYLVHFARSNSLAAYKAKSMAS  357
             P +RPIWK +  H FV  L  G LP E+F+ Y++QDYLYLV+FAR  ++ A K+  +  
Sbjct  1    HPQLRPIWKFYINHPFVQALAKGTLPREQFQGYVIQDYLYLVNFARVLAIIASKSPDLEV  60

Query  358  -VAASAKIVLHIERETALHLDYCASFGLSKAEMESYPESLACTAYSRYILDVGQSEDWLA  416
                  +IV H   E  LHL    + GLS+ ++ +Y    A  AY RY+LD  +   WL 
Sbjct  61   RREWENRIVDHDGNEIELHLRLAEALGLSREDLSAYKPLPATRAYVRYLLDFARRGSWLE  120

Query  417  LQMALAPCLIGYGAIAKRLYTEKETLREGNRYWRWIENYVAEDYTEAVRLGSVYVADRSV  476
               AL PCL  Y  IA RL  EK    EG  Y+ W++ Y +E +  AV            
Sbjct  121  AVAALLPCLFVYQEIASRL-GEKIRALEGPEYYEWVKTYASEYFRAAV---------EEA  170

Query  477  LELLETHIRQVSPSRMEELIKIFIRATELEISFWDMGLG  515
              LL+  +  VS  ++EEL +IF++A E E SFW M L 
Sbjct  171  KRLLDRLLAYVSDEQLEELQEIFLKALEFEYSFWTMALD  209



Lambda      K        H        a         alpha
   0.319    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00018030

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00012009

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  199     5e-64
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  76.9    5e-18


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 199 bits (507),  Expect = 5e-64, Method: Composition-based stats.
 Identities = 72/172 (42%), Positives = 105/172 (61%), Gaps = 7/172 (4%)

Query  37   TAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTR  96
            T IQ++  P  L GRDV+  A TGSGKTL + LPA+  ++        +GP  L+LAPTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLD-----NGPQALVLAPTR  55

Query  97   ELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRT  156
            ELA QI  E+ K GK   ++   + GG  +  Q+  L +G ++ + TPGRL+D+L+  R 
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVGTPGRLLDLLQE-RK  113

Query  157  NLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMWSATWPKEVRQL  208
             L+ +  LVLDEA R+LDMGF P + +I+ ++   RQ  + SAT P+ +  L
Sbjct  114  LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 76.9 bits (190),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 31/82 (38%), Positives = 50/82 (61%), Gaps = 4/82 (5%)

Query  243  EKRDKMIKHLEKIMENRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWV  302
            EK + +++ L+K    R  K LIF+ TK+  +     L ++G     +HGD  Q+ER+ +
Sbjct  1    EKLEALLELLKK---ERGGKVLIFSQTKKTLEA-ELLLEKEGIKVARLHGDLSQEEREEI  56

Query  303  LNEFKTGKSPIMVATDVASRGI  324
            L +F+ GK  ++VATDVA RG+
Sbjct  57   LEDFRKGKIDVLVATDVAERGL  78



Lambda      K        H        a         alpha
   0.320    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00012008

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  200     1e-63
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  126     4e-36


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 200 bits (512),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 72/172 (42%), Positives = 105/172 (61%), Gaps = 7/172 (4%)

Query  37   TAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTR  96
            T IQ++  P  L GRDV+  A TGSGKTL + LPA+  ++        +GP  L+LAPTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLD-----NGPQALVLAPTR  55

Query  97   ELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRT  156
            ELA QI  E+ K GK   ++   + GG  +  Q+  L +G ++ + TPGRL+D+L+  R 
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVGTPGRLLDLLQE-RK  113

Query  157  NLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMWSATWPKEVRQL  208
             L+ +  LVLDEA R+LDMGF P + +I+ ++   RQ  + SAT P+ +  L
Sbjct  114  LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 126 bits (320),  Expect = 4e-36, Method: Composition-based stats.
 Identities = 49/113 (43%), Positives = 71/113 (63%), Gaps = 4/113 (4%)

Query  243  EKRDKMIKHLEKIMENRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWV  302
            EK + +++ L+K    R  K LIF+ TK+  +     L ++G     +HGD  Q+ER+ +
Sbjct  1    EKLEALLELLKK---ERGGKVLIFSQTKKTLEA-ELLLEKEGIKVARLHGDLSQEEREEI  56

Query  303  LNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAG  355
            L +F+ GK  ++VATDVA RG+D+ D+  V+NYD P N   YI RIGR GRAG
Sbjct  57   LEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00018031

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.143    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00018032

Length=458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  203     2e-64
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  77.6    5e-18


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 203 bits (519),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 72/172 (42%), Positives = 105/172 (61%), Gaps = 7/172 (4%)

Query  145  TAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTR  204
            T IQ++  P  L GRDV+  A TGSGKTL + LPA+  ++        +GP  L+LAPTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLD-----NGPQALVLAPTR  55

Query  205  ELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRT  264
            ELA QI  E+ K GK   ++   + GG  +  Q+  L +G ++ + TPGRL+D+L+  R 
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVGTPGRLLDLLQE-RK  113

Query  265  NLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMWSATWPKEVRQL  316
             L+ +  LVLDEA R+LDMGF P + +I+ ++   RQ  + SAT P+ +  L
Sbjct  114  LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 77.6 bits (192),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 31/82 (38%), Positives = 50/82 (61%), Gaps = 4/82 (5%)

Query  351  EKRDKMIKHLEKIMENRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWV  410
            EK + +++ L+K    R  K LIF+ TK+  +     L ++G     +HGD  Q+ER+ +
Sbjct  1    EKLEALLELLKK---ERGGKVLIFSQTKKTLEA-ELLLEKEGIKVARLHGDLSQEEREEI  56

Query  411  LNEFKTGKSPIMVATDVASRGI  432
            L +F+ GK  ++VATDVA RG+
Sbjct  57   LEDFRKGKIDVLVATDVAERGL  78



Lambda      K        H        a         alpha
   0.318    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 564403072


Query= TCONS_00012011

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  204     6e-64
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  128     6e-36


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 204 bits (521),  Expect = 6e-64, Method: Composition-based stats.
 Identities = 72/172 (42%), Positives = 105/172 (61%), Gaps = 7/172 (4%)

Query  147  TAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTR  206
            T IQ++  P  L GRDV+  A TGSGKTL + LPA+  ++        +GP  L+LAPTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLD-----NGPQALVLAPTR  55

Query  207  ELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRT  266
            ELA QI  E+ K GK   ++   + GG  +  Q+  L +G ++ + TPGRL+D+L+  R 
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVGTPGRLLDLLQE-RK  113

Query  267  NLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMWSATWPKEVRQL  318
             L+ +  LVLDEA R+LDMGF P + +I+ ++   RQ  + SAT P+ +  L
Sbjct  114  LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 128 bits (323),  Expect = 6e-36, Method: Composition-based stats.
 Identities = 49/113 (43%), Positives = 71/113 (63%), Gaps = 4/113 (4%)

Query  353  EKRDKMIKHLEKIMENRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWV  412
            EK + +++ L+K    R  K LIF+ TK+  +     L ++G     +HGD  Q+ER+ +
Sbjct  1    EKLEALLELLKK---ERGGKVLIFSQTKKTLEA-ELLLEKEGIKVARLHGDLSQEEREEI  56

Query  413  LNEFKTGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAG  465
            L +F+ GK  ++VATDVA RG+D+ D+  V+NYD P N   YI RIGR GRAG
Sbjct  57   LEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00012010

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  203     2e-64
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  77.6    5e-18


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 203 bits (519),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 72/172 (42%), Positives = 105/172 (61%), Gaps = 7/172 (4%)

Query  147  TAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTR  206
            T IQ++  P  L GRDV+  A TGSGKTL + LPA+  ++        +GP  L+LAPTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLD-----NGPQALVLAPTR  55

Query  207  ELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRT  266
            ELA QI  E+ K GK   ++   + GG  +  Q+  L +G ++ + TPGRL+D+L+  R 
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVGTPGRLLDLLQE-RK  113

Query  267  NLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMWSATWPKEVRQL  318
             L+ +  LVLDEA R+LDMGF P + +I+ ++   RQ  + SAT P+ +  L
Sbjct  114  LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 77.6 bits (192),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 31/82 (38%), Positives = 50/82 (61%), Gaps = 4/82 (5%)

Query  353  EKRDKMIKHLEKIMENRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWV  412
            EK + +++ L+K    R  K LIF+ TK+  +     L ++G     +HGD  Q+ER+ +
Sbjct  1    EKLEALLELLKK---ERGGKVLIFSQTKKTLEA-ELLLEKEGIKVARLHGDLSQEEREEI  56

Query  413  LNEFKTGKSPIMVATDVASRGI  434
            L +F+ GK  ++VATDVA RG+
Sbjct  57   LEDFRKGKIDVLVATDVAERGL  78



Lambda      K        H        a         alpha
   0.317    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00012012

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  204     1e-63
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  116     7e-32


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 204 bits (520),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 72/172 (42%), Positives = 105/172 (61%), Gaps = 7/172 (4%)

Query  145  TAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTR  204
            T IQ++  P  L GRDV+  A TGSGKTL + LPA+  ++        +GP  L+LAPTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLD-----NGPQALVLAPTR  55

Query  205  ELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRT  264
            ELA QI  E+ K GK   ++   + GG  +  Q+  L +G ++ + TPGRL+D+L+  R 
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVGTPGRLLDLLQE-RK  113

Query  265  NLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMWSATWPKEVRQL  316
             L+ +  LVLDEA R+LDMGF P + +I+ ++   RQ  + SAT P+ +  L
Sbjct  114  LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 116 bits (294),  Expect = 7e-32, Method: Composition-based stats.
 Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 22/131 (17%)

Query  351  EKRDKMIKHLEKIMENRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWV  410
            EK + +++ L+K    R  K LIF+ TK+  +     L ++G     +HGD  Q+ER+ +
Sbjct  1    EKLEALLELLKK---ERGGKVLIFSQTKKTLEA-ELLLEKEGIKVARLHGDLSQEEREEI  56

Query  411  LNEFKTGKSPIMVATDVASRGIGLVAIFTNALFANLNLFKDVRDITHVLNYDYPNNSEDY  470
            L +F+ GK  ++VATDVA RG+                  D+ D+  V+NYD P N   Y
Sbjct  57   LEDFRKGKIDVLVATDVAERGL------------------DLPDVDLVINYDLPWNPASY  98

Query  471  IHRIGRTGRAG  481
            I RIGR GRAG
Sbjct  99   IQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.318    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 706864444


Query= TCONS_00012013

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00018033

Length=367


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00018034

Length=386


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00012027

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00012015

Length=396


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00012014

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00018035

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00018036

Length=360


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00012021

Length=363


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00012016

Length=370


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00018037

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00018038

Length=351


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00012018

Length=367


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00018039

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00018042

Length=362


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00018041

Length=351


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00018040

Length=370


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00018043

Length=392


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00012017

Length=415


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00012020

Length=351


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00012019

Length=399


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 481536020


Query= TCONS_00018044

Length=351


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00018045

Length=367


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00012022

Length=415


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00012023

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00018046

Length=415


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00012024

Length=367


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00018047

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00018048

Length=367


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00018049

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00012026

Length=389


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00012025

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00018050

Length=392


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00012028

Length=380


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00012029

Length=370


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00012030

Length=408


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00012031

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00018051

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00018052

Length=256


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00012032

Length=564


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 705370016


Query= TCONS_00018053

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395513 pfam00638, Ran_BP1, RanBP1 domain                          70.9    2e-15


>CDD:395513 pfam00638, Ran_BP1, RanBP1 domain.  
Length=122

 Score = 70.9 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 30/77 (39%), Positives = 45/77 (58%), Gaps = 7/77 (9%)

Query  380  QIETGEEQEKTYFSGKAKLFQFTN--KEWKERGIGTFKVNVRVTDGQEDKKAARMIMRAD  437
            +++TGEE E+  FS +AKLF+F    K+WKERG+G  K+        +D    R++MR D
Sbjct  1    EVKTGEEDEEVLFSQRAKLFRFDAEVKQWKERGVGDIKIL-----KNKDDGKVRILMRRD  55

Query  438  GVLRVMLNTPLFKGMKV  454
             VL+V  N  +   M +
Sbjct  56   QVLKVCANHYITPDMTL  72



Lambda      K        H        a         alpha
   0.304    0.122    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00012033

Length=220


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00012035

Length=382


***** No hits found *****



Lambda      K        H        a         alpha
   0.300    0.118    0.316    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00012036

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.148    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00018054

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395513 pfam00638, Ran_BP1, RanBP1 domain                          77.1    1e-17


>CDD:395513 pfam00638, Ran_BP1, RanBP1 domain.  
Length=122

 Score = 77.1 bits (190),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 61/123 (50%), Gaps = 8/123 (7%)

Query  380  QIETGEEQEKTYFSGKAKLFQFTN--KEWKERGIGTFKVNVRVTDGQEDKKAARMIMRAD  437
            +++TGEE E+  FS +AKLF+F    K+WKERG+G  K+        +D    R++MR D
Sbjct  1    EVKTGEEDEEVLFSQRAKLFRFDAEVKQWKERGVGDIKIL-----KNKDDGKVRILMRRD  55

Query  438  GVLRVMLNTPLFKGMKVGDPSGNEPKSKQIHLAGV-EDGRTVPLLLRVGSEDVAKELYHV  496
             VL+V  N  +   M +   +G++             +G+   L +R  +++ A      
Sbjct  56   QVLKVCANHYITPDMTLKPLAGSDRSWVWTAADFADGEGKPEQLAIRFKTKEEADSFKKK  115

Query  497  IQD  499
             ++
Sbjct  116  FEE  118



Lambda      K        H        a         alpha
   0.304    0.123    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00018055

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461468 pfam04893, Yip1, Yip1 domain. The Yip1 integral membra...  61.7    4e-12


>CDD:461468 pfam04893, Yip1, Yip1 domain.  The Yip1 integral membrane domain 
contains four transmembrane alpha helices. The domain is 
characterized by the motifs DLYGP and GY. The Yip1 protein 
is a golgi protein involved in vesicular transport that interacts 
with GTPases.
Length=173

 Score = 61.7 bits (150),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 39/157 (25%), Positives = 58/157 (37%), Gaps = 22/157 (14%)

Query  164  RDWDLWGPLIFCLLLSMFLS------------MRAKDDQSS------LVFSGVFSIVWIG  205
               DL GPL+  LLL   L+                  Q S          G+   + I 
Sbjct  17   EPPDLLGPLLILLLLLALLAALALLIGGTQVGWALSLTQLSALAVAIGALIGILLGLLIL  76

Query  206  EAVVTLQIKLLGGNMSFFQSVCIIGYTLFPLVIAAMLSALGLPTIARIPVY-LALIAWS-  263
             A++    +L GG  SF Q++ + GY L PL++  +LS L       + +  L    WS 
Sbjct  77   AALLYWLGRLFGGRGSFKQTLAVAGYALLPLILGGLLSGLLPLLWLPLSLVGLLFGIWSL  136

Query  264  --LAAGVSILGGSGVIKNRVGIAVYPLFVFYIAIGCL  298
              L  G+    G    K    IA   L +  + +  L
Sbjct  137  YLLYLGLKEAHGLSSKKAAALIAALLLLLLLLLLVLL  173



Lambda      K        H        a         alpha
   0.322    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00018056

Length=263


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 290477132


Query= TCONS_00018057

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.145    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00018058

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.146    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00012037

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395513 pfam00638, Ran_BP1, RanBP1 domain                          77.1    1e-17


>CDD:395513 pfam00638, Ran_BP1, RanBP1 domain.  
Length=122

 Score = 77.1 bits (190),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 61/123 (50%), Gaps = 8/123 (7%)

Query  380  QIETGEEQEKTYFSGKAKLFQFTN--KEWKERGIGTFKVNVRVTDGQEDKKAARMIMRAD  437
            +++TGEE E+  FS +AKLF+F    K+WKERG+G  K+        +D    R++MR D
Sbjct  1    EVKTGEEDEEVLFSQRAKLFRFDAEVKQWKERGVGDIKIL-----KNKDDGKVRILMRRD  55

Query  438  GVLRVMLNTPLFKGMKVGDPSGNEPKSKQIHLAGV-EDGRTVPLLLRVGSEDVAKELYHV  496
             VL+V  N  +   M +   +G++             +G+   L +R  +++ A      
Sbjct  56   QVLKVCANHYITPDMTLKPLAGSDRSWVWTAADFADGEGKPEQLAIRFKTKEEADSFKKK  115

Query  497  IQD  499
             ++
Sbjct  116  FEE  118



Lambda      K        H        a         alpha
   0.304    0.123    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00018059

Length=382


***** No hits found *****



Lambda      K        H        a         alpha
   0.300    0.118    0.316    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00012040

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395513 pfam00638, Ran_BP1, RanBP1 domain                          77.1    1e-17


>CDD:395513 pfam00638, Ran_BP1, RanBP1 domain.  
Length=122

 Score = 77.1 bits (190),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 61/123 (50%), Gaps = 8/123 (7%)

Query  380  QIETGEEQEKTYFSGKAKLFQFTN--KEWKERGIGTFKVNVRVTDGQEDKKAARMIMRAD  437
            +++TGEE E+  FS +AKLF+F    K+WKERG+G  K+        +D    R++MR D
Sbjct  1    EVKTGEEDEEVLFSQRAKLFRFDAEVKQWKERGVGDIKIL-----KNKDDGKVRILMRRD  55

Query  438  GVLRVMLNTPLFKGMKVGDPSGNEPKSKQIHLAGV-EDGRTVPLLLRVGSEDVAKELYHV  496
             VL+V  N  +   M +   +G++             +G+   L +R  +++ A      
Sbjct  56   QVLKVCANHYITPDMTLKPLAGSDRSWVWTAADFADGEGKPEQLAIRFKTKEEADSFKKK  115

Query  497  IQD  499
             ++
Sbjct  116  FEE  118



Lambda      K        H        a         alpha
   0.304    0.123    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00012039

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395513 pfam00638, Ran_BP1, RanBP1 domain                          70.9    2e-15


>CDD:395513 pfam00638, Ran_BP1, RanBP1 domain.  
Length=122

 Score = 70.9 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 30/77 (39%), Positives = 45/77 (58%), Gaps = 7/77 (9%)

Query  380  QIETGEEQEKTYFSGKAKLFQFTN--KEWKERGIGTFKVNVRVTDGQEDKKAARMIMRAD  437
            +++TGEE E+  FS +AKLF+F    K+WKERG+G  K+        +D    R++MR D
Sbjct  1    EVKTGEEDEEVLFSQRAKLFRFDAEVKQWKERGVGDIKIL-----KNKDDGKVRILMRRD  55

Query  438  GVLRVMLNTPLFKGMKV  454
             VL+V  N  +   M +
Sbjct  56   QVLKVCANHYITPDMTL  72



Lambda      K        H        a         alpha
   0.304    0.122    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00012041

Length=491
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395513 pfam00638, Ran_BP1, RanBP1 domain                          77.9    6e-18


>CDD:395513 pfam00638, Ran_BP1, RanBP1 domain.  
Length=122

 Score = 77.9 bits (192),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 61/123 (50%), Gaps = 8/123 (7%)

Query  367  QIETGEEQEKTYFSGKAKLFQFTN--KEWKERGIGTFKVNVRVTDGQEDKKAARMIMRAD  424
            +++TGEE E+  FS +AKLF+F    K+WKERG+G  K+        +D    R++MR D
Sbjct  1    EVKTGEEDEEVLFSQRAKLFRFDAEVKQWKERGVGDIKIL-----KNKDDGKVRILMRRD  55

Query  425  GVLRVMLNTPLFKGMKVGDPSGNEPKSKQIHLAGV-EDGRTVPLLLRVGSEDVAKELYHV  483
             VL+V  N  +   M +   +G++             +G+   L +R  +++ A      
Sbjct  56   QVLKVCANHYITPDMTLKPLAGSDRSWVWTAADFADGEGKPEQLAIRFKTKEEADSFKKK  115

Query  484  IQD  486
             ++
Sbjct  116  FEE  118



Lambda      K        H        a         alpha
   0.304    0.123    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 605626400


Query= TCONS_00018060

Length=1206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  125     1e-33
CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF199...  70.7    2e-15
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  69.5    9e-15


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 125 bits (316),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 50/181 (28%), Positives = 82/181 (45%), Gaps = 20/181 (11%)

Query  416  YLHQAEAINSLYAGEDVIVSTSTSSGKSLIYQVPMLHEL-GRDPNSRGMYIFPTKALAQD  474
               QAEAI ++  G DV+V   T SGK+L + +P L  L   D   + + + PT+ LA+ 
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQ  60

Query  475  QKRSIKELLQFMDGLQDVMVETFDGDTPMGSRNLIRDEARIIFTNPDMLHITILPQESSW  534
                +K+L + +      +     GD+       ++    I+   P  L   +       
Sbjct  61   IYEELKKLGKGLG---LKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ-----E  111

Query  535  RTILKNLKFVVVDELHVYNGL-FGSHVAFIMRRLRRICAAVGNRHVRFISCSATVA-NPE  592
            R +LKNLK +V+DE H    + FG  +  I+RRL         +  + +  SAT+  N E
Sbjct  112  RKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLP--------KKRQILLLSATLPRNLE  163

Query  593  E  593
            +
Sbjct  164  D  164


>CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF1998).  This 
family of proteins are functionally uncharacterized. They 
are mainly found in helicase proteins so could be RNA binding. 
This family includes a probable zinc binding motif at its 
C-terminus.
Length=78

 Score = 70.7 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 29/108 (27%), Positives = 42/108 (39%), Gaps = 34/108 (31%)

Query  1026  VLSLLPTFVISSPGDVKTECKVAKKELGRNLKIANEMRDQQIKENIRKLQPPARQRPARL  1085
             ++S LP F+     D+  E                                P      R+
Sbjct  5     LISALPLFLGCDRSDIGGESY------------------------------PPDTGRPRI  34

Query  1086  TFYDAKGGSCGSGIASKAFEFVDVLLRRAVARIEACECVTPQGCMECV  1133
               YDA  G  G+G+A KAFE +  LL  A+ R+E+C+C    GC  C+
Sbjct  35    LIYDAYPG--GAGLAEKAFELLGELLEAALERLESCDCEA--GCPSCL  78


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 69.5 bits (171),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 30/116 (26%), Positives = 54/116 (47%), Gaps = 12/116 (10%)

Query  645  RLFCQLI--LRGARVIAFCRIRKMCEVLLQAVRNEFQAIGRPEVGKLVMGYRGGYSPQDR  702
                +L+   RG +V+ F + +K  E  L   +   +          V    G  S ++R
Sbjct  4    EALLELLKKERGGKVLIFSQTKKTLEAELLLEKEGIK----------VARLHGDLSQEER  53

Query  703  RKIEREMFEGHLLGIVATNALELGVDIGSLDAVITLGFPYSISNLRQQSGRAGRRN  758
             +I  +  +G +  +VAT+  E G+D+  +D VI    P++ ++  Q+ GRAGR  
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1548427942


Query= TCONS_00012042

Length=1206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  125     1e-33
CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF199...  70.7    2e-15
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  69.5    9e-15


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 125 bits (316),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 50/181 (28%), Positives = 82/181 (45%), Gaps = 20/181 (11%)

Query  416  YLHQAEAINSLYAGEDVIVSTSTSSGKSLIYQVPMLHEL-GRDPNSRGMYIFPTKALAQD  474
               QAEAI ++  G DV+V   T SGK+L + +P L  L   D   + + + PT+ LA+ 
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQ  60

Query  475  QKRSIKELLQFMDGLQDVMVETFDGDTPMGSRNLIRDEARIIFTNPDMLHITILPQESSW  534
                +K+L + +      +     GD+       ++    I+   P  L   +       
Sbjct  61   IYEELKKLGKGLG---LKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ-----E  111

Query  535  RTILKNLKFVVVDELHVYNGL-FGSHVAFIMRRLRRICAAVGNRHVRFISCSATVA-NPE  592
            R +LKNLK +V+DE H    + FG  +  I+RRL         +  + +  SAT+  N E
Sbjct  112  RKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLP--------KKRQILLLSATLPRNLE  163

Query  593  E  593
            +
Sbjct  164  D  164


>CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF1998).  This 
family of proteins are functionally uncharacterized. They 
are mainly found in helicase proteins so could be RNA binding. 
This family includes a probable zinc binding motif at its 
C-terminus.
Length=78

 Score = 70.7 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 29/108 (27%), Positives = 42/108 (39%), Gaps = 34/108 (31%)

Query  1026  VLSLLPTFVISSPGDVKTECKVAKKELGRNLKIANEMRDQQIKENIRKLQPPARQRPARL  1085
             ++S LP F+     D+  E                                P      R+
Sbjct  5     LISALPLFLGCDRSDIGGESY------------------------------PPDTGRPRI  34

Query  1086  TFYDAKGGSCGSGIASKAFEFVDVLLRRAVARIEACECVTPQGCMECV  1133
               YDA  G  G+G+A KAFE +  LL  A+ R+E+C+C    GC  C+
Sbjct  35    LIYDAYPG--GAGLAEKAFELLGELLEAALERLESCDCEA--GCPSCL  78


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 69.5 bits (171),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 30/116 (26%), Positives = 54/116 (47%), Gaps = 12/116 (10%)

Query  645  RLFCQLI--LRGARVIAFCRIRKMCEVLLQAVRNEFQAIGRPEVGKLVMGYRGGYSPQDR  702
                +L+   RG +V+ F + +K  E  L   +   +          V    G  S ++R
Sbjct  4    EALLELLKKERGGKVLIFSQTKKTLEAELLLEKEGIK----------VARLHGDLSQEER  53

Query  703  RKIEREMFEGHLLGIVATNALELGVDIGSLDAVITLGFPYSISNLRQQSGRAGRRN  758
             +I  +  +G +  +VAT+  E G+D+  +D VI    P++ ++  Q+ GRAGR  
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1548427942


Query= TCONS_00018061

Length=1206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  125     1e-33
CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF199...  70.7    2e-15
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  69.5    9e-15


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 125 bits (316),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 50/181 (28%), Positives = 82/181 (45%), Gaps = 20/181 (11%)

Query  416  YLHQAEAINSLYAGEDVIVSTSTSSGKSLIYQVPMLHEL-GRDPNSRGMYIFPTKALAQD  474
               QAEAI ++  G DV+V   T SGK+L + +P L  L   D   + + + PT+ LA+ 
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQ  60

Query  475  QKRSIKELLQFMDGLQDVMVETFDGDTPMGSRNLIRDEARIIFTNPDMLHITILPQESSW  534
                +K+L + +      +     GD+       ++    I+   P  L   +       
Sbjct  61   IYEELKKLGKGLG---LKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ-----E  111

Query  535  RTILKNLKFVVVDELHVYNGL-FGSHVAFIMRRLRRICAAVGNRHVRFISCSATVA-NPE  592
            R +LKNLK +V+DE H    + FG  +  I+RRL         +  + +  SAT+  N E
Sbjct  112  RKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLP--------KKRQILLLSATLPRNLE  163

Query  593  E  593
            +
Sbjct  164  D  164


>CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF1998).  This 
family of proteins are functionally uncharacterized. They 
are mainly found in helicase proteins so could be RNA binding. 
This family includes a probable zinc binding motif at its 
C-terminus.
Length=78

 Score = 70.7 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 29/108 (27%), Positives = 42/108 (39%), Gaps = 34/108 (31%)

Query  1026  VLSLLPTFVISSPGDVKTECKVAKKELGRNLKIANEMRDQQIKENIRKLQPPARQRPARL  1085
             ++S LP F+     D+  E                                P      R+
Sbjct  5     LISALPLFLGCDRSDIGGESY------------------------------PPDTGRPRI  34

Query  1086  TFYDAKGGSCGSGIASKAFEFVDVLLRRAVARIEACECVTPQGCMECV  1133
               YDA  G  G+G+A KAFE +  LL  A+ R+E+C+C    GC  C+
Sbjct  35    LIYDAYPG--GAGLAEKAFELLGELLEAALERLESCDCEA--GCPSCL  78


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 69.5 bits (171),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 30/116 (26%), Positives = 54/116 (47%), Gaps = 12/116 (10%)

Query  645  RLFCQLI--LRGARVIAFCRIRKMCEVLLQAVRNEFQAIGRPEVGKLVMGYRGGYSPQDR  702
                +L+   RG +V+ F + +K  E  L   +   +          V    G  S ++R
Sbjct  4    EALLELLKKERGGKVLIFSQTKKTLEAELLLEKEGIK----------VARLHGDLSQEER  53

Query  703  RKIEREMFEGHLLGIVATNALELGVDIGSLDAVITLGFPYSISNLRQQSGRAGRRN  758
             +I  +  +G +  +VAT+  E G+D+  +D VI    P++ ++  Q+ GRAGR  
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1548427942


Query= TCONS_00012046

Length=1206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  125     1e-33
CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF199...  70.7    2e-15
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  69.5    9e-15


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 125 bits (316),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 50/181 (28%), Positives = 82/181 (45%), Gaps = 20/181 (11%)

Query  416  YLHQAEAINSLYAGEDVIVSTSTSSGKSLIYQVPMLHEL-GRDPNSRGMYIFPTKALAQD  474
               QAEAI ++  G DV+V   T SGK+L + +P L  L   D   + + + PT+ LA+ 
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQ  60

Query  475  QKRSIKELLQFMDGLQDVMVETFDGDTPMGSRNLIRDEARIIFTNPDMLHITILPQESSW  534
                +K+L + +      +     GD+       ++    I+   P  L   +       
Sbjct  61   IYEELKKLGKGLG---LKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ-----E  111

Query  535  RTILKNLKFVVVDELHVYNGL-FGSHVAFIMRRLRRICAAVGNRHVRFISCSATVA-NPE  592
            R +LKNLK +V+DE H    + FG  +  I+RRL         +  + +  SAT+  N E
Sbjct  112  RKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLP--------KKRQILLLSATLPRNLE  163

Query  593  E  593
            +
Sbjct  164  D  164


>CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF1998).  This 
family of proteins are functionally uncharacterized. They 
are mainly found in helicase proteins so could be RNA binding. 
This family includes a probable zinc binding motif at its 
C-terminus.
Length=78

 Score = 70.7 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 29/108 (27%), Positives = 42/108 (39%), Gaps = 34/108 (31%)

Query  1026  VLSLLPTFVISSPGDVKTECKVAKKELGRNLKIANEMRDQQIKENIRKLQPPARQRPARL  1085
             ++S LP F+     D+  E                                P      R+
Sbjct  5     LISALPLFLGCDRSDIGGESY------------------------------PPDTGRPRI  34

Query  1086  TFYDAKGGSCGSGIASKAFEFVDVLLRRAVARIEACECVTPQGCMECV  1133
               YDA  G  G+G+A KAFE +  LL  A+ R+E+C+C    GC  C+
Sbjct  35    LIYDAYPG--GAGLAEKAFELLGELLEAALERLESCDCEA--GCPSCL  78


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 69.5 bits (171),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 30/116 (26%), Positives = 54/116 (47%), Gaps = 12/116 (10%)

Query  645  RLFCQLI--LRGARVIAFCRIRKMCEVLLQAVRNEFQAIGRPEVGKLVMGYRGGYSPQDR  702
                +L+   RG +V+ F + +K  E  L   +   +          V    G  S ++R
Sbjct  4    EALLELLKKERGGKVLIFSQTKKTLEAELLLEKEGIK----------VARLHGDLSQEER  53

Query  703  RKIEREMFEGHLLGIVATNALELGVDIGSLDAVITLGFPYSISNLRQQSGRAGRRN  758
             +I  +  +G +  +VAT+  E G+D+  +D VI    P++ ++  Q+ GRAGR  
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 1548427942


Query= TCONS_00012045

Length=1206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  125     1e-33
CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF199...  70.7    2e-15
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  69.5    9e-15


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 125 bits (316),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 50/181 (28%), Positives = 82/181 (45%), Gaps = 20/181 (11%)

Query  416  YLHQAEAINSLYAGEDVIVSTSTSSGKSLIYQVPMLHEL-GRDPNSRGMYIFPTKALAQD  474
               QAEAI ++  G DV+V   T SGK+L + +P L  L   D   + + + PT+ LA+ 
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQ  60

Query  475  QKRSIKELLQFMDGLQDVMVETFDGDTPMGSRNLIRDEARIIFTNPDMLHITILPQESSW  534
                +K+L + +      +     GD+       ++    I+   P  L   +       
Sbjct  61   IYEELKKLGKGLG---LKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ-----E  111

Query  535  RTILKNLKFVVVDELHVYNGL-FGSHVAFIMRRLRRICAAVGNRHVRFISCSATVA-NPE  592
            R +LKNLK +V+DE H    + FG  +  I+RRL         +  + +  SAT+  N E
Sbjct  112  RKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLP--------KKRQILLLSATLPRNLE  163

Query  593  E  593
            +
Sbjct  164  D  164


>CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF1998).  This 
family of proteins are functionally uncharacterized. They 
are mainly found in helicase proteins so could be RNA binding. 
This family includes a probable zinc binding motif at its 
C-terminus.
Length=78

 Score = 70.7 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 29/108 (27%), Positives = 42/108 (39%), Gaps = 34/108 (31%)

Query  1026  VLSLLPTFVISSPGDVKTECKVAKKELGRNLKIANEMRDQQIKENIRKLQPPARQRPARL  1085
             ++S LP F+     D+  E                                P      R+
Sbjct  5     LISALPLFLGCDRSDIGGESY------------------------------PPDTGRPRI  34

Query  1086  TFYDAKGGSCGSGIASKAFEFVDVLLRRAVARIEACECVTPQGCMECV  1133
               YDA  G  G+G+A KAFE +  LL  A+ R+E+C+C    GC  C+
Sbjct  35    LIYDAYPG--GAGLAEKAFELLGELLEAALERLESCDCEA--GCPSCL  78


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 69.5 bits (171),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 30/116 (26%), Positives = 54/116 (47%), Gaps = 12/116 (10%)

Query  645  RLFCQLI--LRGARVIAFCRIRKMCEVLLQAVRNEFQAIGRPEVGKLVMGYRGGYSPQDR  702
                +L+   RG +V+ F + +K  E  L   +   +          V    G  S ++R
Sbjct  4    EALLELLKKERGGKVLIFSQTKKTLEAELLLEKEGIK----------VARLHGDLSQEER  53

Query  703  RKIEREMFEGHLLGIVATNALELGVDIGSLDAVITLGFPYSISNLRQQSGRAGRRN  758
             +I  +  +G +  +VAT+  E G+D+  +D VI    P++ ++  Q+ GRAGR  
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1548427942


Query= TCONS_00012044

Length=1206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  125     1e-33
CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF199...  70.7    2e-15
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  69.5    9e-15


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 125 bits (316),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 50/181 (28%), Positives = 82/181 (45%), Gaps = 20/181 (11%)

Query  416  YLHQAEAINSLYAGEDVIVSTSTSSGKSLIYQVPMLHEL-GRDPNSRGMYIFPTKALAQD  474
               QAEAI ++  G DV+V   T SGK+L + +P L  L   D   + + + PT+ LA+ 
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQ  60

Query  475  QKRSIKELLQFMDGLQDVMVETFDGDTPMGSRNLIRDEARIIFTNPDMLHITILPQESSW  534
                +K+L + +      +     GD+       ++    I+   P  L   +       
Sbjct  61   IYEELKKLGKGLG---LKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ-----E  111

Query  535  RTILKNLKFVVVDELHVYNGL-FGSHVAFIMRRLRRICAAVGNRHVRFISCSATVA-NPE  592
            R +LKNLK +V+DE H    + FG  +  I+RRL         +  + +  SAT+  N E
Sbjct  112  RKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLP--------KKRQILLLSATLPRNLE  163

Query  593  E  593
            +
Sbjct  164  D  164


>CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF1998).  This 
family of proteins are functionally uncharacterized. They 
are mainly found in helicase proteins so could be RNA binding. 
This family includes a probable zinc binding motif at its 
C-terminus.
Length=78

 Score = 70.7 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 29/108 (27%), Positives = 42/108 (39%), Gaps = 34/108 (31%)

Query  1026  VLSLLPTFVISSPGDVKTECKVAKKELGRNLKIANEMRDQQIKENIRKLQPPARQRPARL  1085
             ++S LP F+     D+  E                                P      R+
Sbjct  5     LISALPLFLGCDRSDIGGESY------------------------------PPDTGRPRI  34

Query  1086  TFYDAKGGSCGSGIASKAFEFVDVLLRRAVARIEACECVTPQGCMECV  1133
               YDA  G  G+G+A KAFE +  LL  A+ R+E+C+C    GC  C+
Sbjct  35    LIYDAYPG--GAGLAEKAFELLGELLEAALERLESCDCEA--GCPSCL  78


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 69.5 bits (171),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 30/116 (26%), Positives = 54/116 (47%), Gaps = 12/116 (10%)

Query  645  RLFCQLI--LRGARVIAFCRIRKMCEVLLQAVRNEFQAIGRPEVGKLVMGYRGGYSPQDR  702
                +L+   RG +V+ F + +K  E  L   +   +          V    G  S ++R
Sbjct  4    EALLELLKKERGGKVLIFSQTKKTLEAELLLEKEGIK----------VARLHGDLSQEER  53

Query  703  RKIEREMFEGHLLGIVATNALELGVDIGSLDAVITLGFPYSISNLRQQSGRAGRRN  758
             +I  +  +G +  +VAT+  E G+D+  +D VI    P++ ++  Q+ GRAGR  
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1548427942


Query= TCONS_00012043

Length=1206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  125     1e-33
CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF199...  70.7    2e-15
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  69.5    9e-15


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 125 bits (316),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 50/181 (28%), Positives = 82/181 (45%), Gaps = 20/181 (11%)

Query  416  YLHQAEAINSLYAGEDVIVSTSTSSGKSLIYQVPMLHEL-GRDPNSRGMYIFPTKALAQD  474
               QAEAI ++  G DV+V   T SGK+L + +P L  L   D   + + + PT+ LA+ 
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQ  60

Query  475  QKRSIKELLQFMDGLQDVMVETFDGDTPMGSRNLIRDEARIIFTNPDMLHITILPQESSW  534
                +K+L + +      +     GD+       ++    I+   P  L   +       
Sbjct  61   IYEELKKLGKGLG---LKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ-----E  111

Query  535  RTILKNLKFVVVDELHVYNGL-FGSHVAFIMRRLRRICAAVGNRHVRFISCSATVA-NPE  592
            R +LKNLK +V+DE H    + FG  +  I+RRL         +  + +  SAT+  N E
Sbjct  112  RKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLP--------KKRQILLLSATLPRNLE  163

Query  593  E  593
            +
Sbjct  164  D  164


>CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF1998).  This 
family of proteins are functionally uncharacterized. They 
are mainly found in helicase proteins so could be RNA binding. 
This family includes a probable zinc binding motif at its 
C-terminus.
Length=78

 Score = 70.7 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 29/108 (27%), Positives = 42/108 (39%), Gaps = 34/108 (31%)

Query  1026  VLSLLPTFVISSPGDVKTECKVAKKELGRNLKIANEMRDQQIKENIRKLQPPARQRPARL  1085
             ++S LP F+     D+  E                                P      R+
Sbjct  5     LISALPLFLGCDRSDIGGESY------------------------------PPDTGRPRI  34

Query  1086  TFYDAKGGSCGSGIASKAFEFVDVLLRRAVARIEACECVTPQGCMECV  1133
               YDA  G  G+G+A KAFE +  LL  A+ R+E+C+C    GC  C+
Sbjct  35    LIYDAYPG--GAGLAEKAFELLGELLEAALERLESCDCEA--GCPSCL  78


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 69.5 bits (171),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 30/116 (26%), Positives = 54/116 (47%), Gaps = 12/116 (10%)

Query  645  RLFCQLI--LRGARVIAFCRIRKMCEVLLQAVRNEFQAIGRPEVGKLVMGYRGGYSPQDR  702
                +L+   RG +V+ F + +K  E  L   +   +          V    G  S ++R
Sbjct  4    EALLELLKKERGGKVLIFSQTKKTLEAELLLEKEGIK----------VARLHGDLSQEER  53

Query  703  RKIEREMFEGHLLGIVATNALELGVDIGSLDAVITLGFPYSISNLRQQSGRAGRRN  758
             +I  +  +G +  +VAT+  E G+D+  +D VI    P++ ++  Q+ GRAGR  
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1548427942


Query= TCONS_00012047

Length=1206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  125     1e-33
CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF199...  70.7    2e-15
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  69.5    9e-15


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 125 bits (316),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 50/181 (28%), Positives = 82/181 (45%), Gaps = 20/181 (11%)

Query  416  YLHQAEAINSLYAGEDVIVSTSTSSGKSLIYQVPMLHEL-GRDPNSRGMYIFPTKALAQD  474
               QAEAI ++  G DV+V   T SGK+L + +P L  L   D   + + + PT+ LA+ 
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQ  60

Query  475  QKRSIKELLQFMDGLQDVMVETFDGDTPMGSRNLIRDEARIIFTNPDMLHITILPQESSW  534
                +K+L + +      +     GD+       ++    I+   P  L   +       
Sbjct  61   IYEELKKLGKGLG---LKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ-----E  111

Query  535  RTILKNLKFVVVDELHVYNGL-FGSHVAFIMRRLRRICAAVGNRHVRFISCSATVA-NPE  592
            R +LKNLK +V+DE H    + FG  +  I+RRL         +  + +  SAT+  N E
Sbjct  112  RKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLP--------KKRQILLLSATLPRNLE  163

Query  593  E  593
            +
Sbjct  164  D  164


>CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF1998).  This 
family of proteins are functionally uncharacterized. They 
are mainly found in helicase proteins so could be RNA binding. 
This family includes a probable zinc binding motif at its 
C-terminus.
Length=78

 Score = 70.7 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 29/108 (27%), Positives = 42/108 (39%), Gaps = 34/108 (31%)

Query  1026  VLSLLPTFVISSPGDVKTECKVAKKELGRNLKIANEMRDQQIKENIRKLQPPARQRPARL  1085
             ++S LP F+     D+  E                                P      R+
Sbjct  5     LISALPLFLGCDRSDIGGESY------------------------------PPDTGRPRI  34

Query  1086  TFYDAKGGSCGSGIASKAFEFVDVLLRRAVARIEACECVTPQGCMECV  1133
               YDA  G  G+G+A KAFE +  LL  A+ R+E+C+C    GC  C+
Sbjct  35    LIYDAYPG--GAGLAEKAFELLGELLEAALERLESCDCEA--GCPSCL  78


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 69.5 bits (171),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 30/116 (26%), Positives = 54/116 (47%), Gaps = 12/116 (10%)

Query  645  RLFCQLI--LRGARVIAFCRIRKMCEVLLQAVRNEFQAIGRPEVGKLVMGYRGGYSPQDR  702
                +L+   RG +V+ F + +K  E  L   +   +          V    G  S ++R
Sbjct  4    EALLELLKKERGGKVLIFSQTKKTLEAELLLEKEGIK----------VARLHGDLSQEER  53

Query  703  RKIEREMFEGHLLGIVATNALELGVDIGSLDAVITLGFPYSISNLRQQSGRAGRRN  758
             +I  +  +G +  +VAT+  E G+D+  +D VI    P++ ++  Q+ GRAGR  
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1548427942


Query= TCONS_00012049

Length=1206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  125     1e-33
CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF199...  70.7    2e-15
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  69.5    9e-15


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 125 bits (316),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 50/181 (28%), Positives = 82/181 (45%), Gaps = 20/181 (11%)

Query  416  YLHQAEAINSLYAGEDVIVSTSTSSGKSLIYQVPMLHEL-GRDPNSRGMYIFPTKALAQD  474
               QAEAI ++  G DV+V   T SGK+L + +P L  L   D   + + + PT+ LA+ 
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQ  60

Query  475  QKRSIKELLQFMDGLQDVMVETFDGDTPMGSRNLIRDEARIIFTNPDMLHITILPQESSW  534
                +K+L + +      +     GD+       ++    I+   P  L   +       
Sbjct  61   IYEELKKLGKGLG---LKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ-----E  111

Query  535  RTILKNLKFVVVDELHVYNGL-FGSHVAFIMRRLRRICAAVGNRHVRFISCSATVA-NPE  592
            R +LKNLK +V+DE H    + FG  +  I+RRL         +  + +  SAT+  N E
Sbjct  112  RKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLP--------KKRQILLLSATLPRNLE  163

Query  593  E  593
            +
Sbjct  164  D  164


>CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF1998).  This 
family of proteins are functionally uncharacterized. They 
are mainly found in helicase proteins so could be RNA binding. 
This family includes a probable zinc binding motif at its 
C-terminus.
Length=78

 Score = 70.7 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 29/108 (27%), Positives = 42/108 (39%), Gaps = 34/108 (31%)

Query  1026  VLSLLPTFVISSPGDVKTECKVAKKELGRNLKIANEMRDQQIKENIRKLQPPARQRPARL  1085
             ++S LP F+     D+  E                                P      R+
Sbjct  5     LISALPLFLGCDRSDIGGESY------------------------------PPDTGRPRI  34

Query  1086  TFYDAKGGSCGSGIASKAFEFVDVLLRRAVARIEACECVTPQGCMECV  1133
               YDA  G  G+G+A KAFE +  LL  A+ R+E+C+C    GC  C+
Sbjct  35    LIYDAYPG--GAGLAEKAFELLGELLEAALERLESCDCEA--GCPSCL  78


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 69.5 bits (171),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 30/116 (26%), Positives = 54/116 (47%), Gaps = 12/116 (10%)

Query  645  RLFCQLI--LRGARVIAFCRIRKMCEVLLQAVRNEFQAIGRPEVGKLVMGYRGGYSPQDR  702
                +L+   RG +V+ F + +K  E  L   +   +          V    G  S ++R
Sbjct  4    EALLELLKKERGGKVLIFSQTKKTLEAELLLEKEGIK----------VARLHGDLSQEER  53

Query  703  RKIEREMFEGHLLGIVATNALELGVDIGSLDAVITLGFPYSISNLRQQSGRAGRRN  758
             +I  +  +G +  +VAT+  E G+D+  +D VI    P++ ++  Q+ GRAGR  
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1548427942


Query= TCONS_00012048

Length=1206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  125     1e-33
CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF199...  70.7    2e-15
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  69.5    9e-15


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 125 bits (316),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 50/181 (28%), Positives = 82/181 (45%), Gaps = 20/181 (11%)

Query  416  YLHQAEAINSLYAGEDVIVSTSTSSGKSLIYQVPMLHEL-GRDPNSRGMYIFPTKALAQD  474
               QAEAI ++  G DV+V   T SGK+L + +P L  L   D   + + + PT+ LA+ 
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQ  60

Query  475  QKRSIKELLQFMDGLQDVMVETFDGDTPMGSRNLIRDEARIIFTNPDMLHITILPQESSW  534
                +K+L + +      +     GD+       ++    I+   P  L   +       
Sbjct  61   IYEELKKLGKGLG---LKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLLQ-----E  111

Query  535  RTILKNLKFVVVDELHVYNGL-FGSHVAFIMRRLRRICAAVGNRHVRFISCSATVA-NPE  592
            R +LKNLK +V+DE H    + FG  +  I+RRL         +  + +  SAT+  N E
Sbjct  112  RKLLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLP--------KKRQILLLSATLPRNLE  163

Query  593  E  593
            +
Sbjct  164  D  164


>CDD:462776 pfam09369, DUF1998, Domain of unknown function (DUF1998).  This 
family of proteins are functionally uncharacterized. They 
are mainly found in helicase proteins so could be RNA binding. 
This family includes a probable zinc binding motif at its 
C-terminus.
Length=78

 Score = 70.7 bits (174),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 29/108 (27%), Positives = 42/108 (39%), Gaps = 34/108 (31%)

Query  1026  VLSLLPTFVISSPGDVKTECKVAKKELGRNLKIANEMRDQQIKENIRKLQPPARQRPARL  1085
             ++S LP F+     D+  E                                P      R+
Sbjct  5     LISALPLFLGCDRSDIGGESY------------------------------PPDTGRPRI  34

Query  1086  TFYDAKGGSCGSGIASKAFEFVDVLLRRAVARIEACECVTPQGCMECV  1133
               YDA  G  G+G+A KAFE +  LL  A+ R+E+C+C    GC  C+
Sbjct  35    LIYDAYPG--GAGLAEKAFELLGELLEAALERLESCDCEA--GCPSCL  78


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 69.5 bits (171),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 30/116 (26%), Positives = 54/116 (47%), Gaps = 12/116 (10%)

Query  645  RLFCQLI--LRGARVIAFCRIRKMCEVLLQAVRNEFQAIGRPEVGKLVMGYRGGYSPQDR  702
                +L+   RG +V+ F + +K  E  L   +   +          V    G  S ++R
Sbjct  4    EALLELLKKERGGKVLIFSQTKKTLEAELLLEKEGIK----------VARLHGDLSQEER  53

Query  703  RKIEREMFEGHLLGIVATNALELGVDIGSLDAVITLGFPYSISNLRQQSGRAGRRN  758
             +I  +  +G +  +VAT+  E G+D+  +D VI    P++ ++  Q+ GRAGR  
Sbjct  54   EEILEDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1548427942


Query= TCONS_00018065

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  149     1e-46


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 149 bits (380),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 9/164 (5%)

Query  1    MTLGRVIRAVRGERFSIISLNWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAV  56
            MTLGR+IRA+ GE  S +   W T  FV GD+LS V+Q +  GL+ +  ++        +
Sbjct  48   MTLGRIIRAL-GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENI  106

Query  57   VLIGLFIQLISFGIFGLTAVMFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSV  116
            ++ GL  Q+   GIF + A  F+RR+  +           WK  L  L+  S LI++RS+
Sbjct  107  MIAGLAFQVAFLGIFIILAADFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSI  162

Query  117  YRVVEYSVGSNGYLLQHEWPMYVFDTIPMLTVMIIFYIWYPSRI  160
            YRV E + G +GYL+ HE   YV D + ML  +++  +++P  +
Sbjct  163  YRVAELAQGWDGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.329    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00018064

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  149     1e-46


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 149 bits (380),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 9/164 (5%)

Query  1    MTLGRVIRAVRGERFSIISLNWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAV  56
            MTLGR+IRA+ GE  S +   W T  FV GD+LS V+Q +  GL+ +  ++        +
Sbjct  48   MTLGRIIRAL-GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENI  106

Query  57   VLIGLFIQLISFGIFGLTAVMFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSV  116
            ++ GL  Q+   GIF + A  F+RR+  +           WK  L  L+  S LI++RS+
Sbjct  107  MIAGLAFQVAFLGIFIILAADFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSI  162

Query  117  YRVVEYSVGSNGYLLQHEWPMYVFDTIPMLTVMIIFYIWYPSRI  160
            YRV E + G +GYL+ HE   YV D + ML  +++  +++P  +
Sbjct  163  YRVAELAQGWDGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.329    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00018062

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  191     2e-61


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 191 bits (488),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 117/204 (57%), Gaps = 9/204 (4%)

Query  62   ELYGYGGRIGAHNNTASLFSYAISNDGVLLAPALFAASIYMTLGRVIRAVRGERFSIISL  121
            E+ GY GRI +HNN  SL  + +    +LLAPA  AA+IYMTLGR+IRA+ GE  S +  
Sbjct  8    EVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRAL-GESLSRLRP  66

Query  122  NWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAVVLIGLFIQLISFGIFGLTAV  177
             W T  FV GD+LS V+Q +  GL+ +  ++        +++ GL  Q+   GIF + A 
Sbjct  67   RWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENIMIAGLAFQVAFLGIFIILAA  126

Query  178  MFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSVYRVVEYSVGSNGYLLQHEWP  237
             F+RR+  +           WK  L  L+  S LI++RS+YRV E + G +GYL+ HE  
Sbjct  127  DFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSIYRVAELAQGWDGYLMTHEVY  182

Query  238  MYVFDTIPMLTVMIIFYIWYPSRI  261
             YV D + ML  +++  +++P  +
Sbjct  183  FYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.328    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00018063

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  149     1e-46


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 149 bits (380),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 9/164 (5%)

Query  1    MTLGRVIRAVRGERFSIISLNWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAV  56
            MTLGR+IRA+ GE  S +   W T  FV GD+LS V+Q +  GL+ +  ++        +
Sbjct  48   MTLGRIIRAL-GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENI  106

Query  57   VLIGLFIQLISFGIFGLTAVMFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSV  116
            ++ GL  Q+   GIF + A  F+RR+  +           WK  L  L+  S LI++RS+
Sbjct  107  MIAGLAFQVAFLGIFIILAADFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSI  162

Query  117  YRVVEYSVGSNGYLLQHEWPMYVFDTIPMLTVMIIFYIWYPSRI  160
            YRV E + G +GYL+ HE   YV D + ML  +++  +++P  +
Sbjct  163  YRVAELAQGWDGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.329    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00012050

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00018066

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00012051

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00012052

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  149     1e-46


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 149 bits (380),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 9/164 (5%)

Query  1    MTLGRVIRAVRGERFSIISLNWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAV  56
            MTLGR+IRA+ GE  S +   W T  FV GD+LS V+Q +  GL+ +  ++        +
Sbjct  48   MTLGRIIRAL-GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENI  106

Query  57   VLIGLFIQLISFGIFGLTAVMFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSV  116
            ++ GL  Q+   GIF + A  F+RR+  +           WK  L  L+  S LI++RS+
Sbjct  107  MIAGLAFQVAFLGIFIILAADFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSI  162

Query  117  YRVVEYSVGSNGYLLQHEWPMYVFDTIPMLTVMIIFYIWYPSRI  160
            YRV E + G +GYL+ HE   YV D + ML  +++  +++P  +
Sbjct  163  YRVAELAQGWDGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.329    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00012053

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  149     1e-46


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 149 bits (380),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 9/164 (5%)

Query  1    MTLGRVIRAVRGERFSIISLNWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAV  56
            MTLGR+IRA+ GE  S +   W T  FV GD+LS V+Q +  GL+ +  ++        +
Sbjct  48   MTLGRIIRAL-GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENI  106

Query  57   VLIGLFIQLISFGIFGLTAVMFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSV  116
            ++ GL  Q+   GIF + A  F+RR+  +           WK  L  L+  S LI++RS+
Sbjct  107  MIAGLAFQVAFLGIFIILAADFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSI  162

Query  117  YRVVEYSVGSNGYLLQHEWPMYVFDTIPMLTVMIIFYIWYPSRI  160
            YRV E + G +GYL+ HE   YV D + ML  +++  +++P  +
Sbjct  163  YRVAELAQGWDGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.329    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00018068

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  149     1e-46


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 149 bits (380),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 9/164 (5%)

Query  1    MTLGRVIRAVRGERFSIISLNWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAV  56
            MTLGR+IRA+ GE  S +   W T  FV GD+LS V+Q +  GL+ +  ++        +
Sbjct  48   MTLGRIIRAL-GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENI  106

Query  57   VLIGLFIQLISFGIFGLTAVMFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSV  116
            ++ GL  Q+   GIF + A  F+RR+  +           WK  L  L+  S LI++RS+
Sbjct  107  MIAGLAFQVAFLGIFIILAADFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSI  162

Query  117  YRVVEYSVGSNGYLLQHEWPMYVFDTIPMLTVMIIFYIWYPSRI  160
            YRV E + G +GYL+ HE   YV D + ML  +++  +++P  +
Sbjct  163  YRVAELAQGWDGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.329    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00018067

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  149     1e-46


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 149 bits (380),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 9/164 (5%)

Query  1    MTLGRVIRAVRGERFSIISLNWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAV  56
            MTLGR+IRA+ GE  S +   W T  FV GD+LS V+Q +  GL+ +  ++        +
Sbjct  48   MTLGRIIRAL-GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENI  106

Query  57   VLIGLFIQLISFGIFGLTAVMFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSV  116
            ++ GL  Q+   GIF + A  F+RR+  +           WK  L  L+  S LI++RS+
Sbjct  107  MIAGLAFQVAFLGIFIILAADFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSI  162

Query  117  YRVVEYSVGSNGYLLQHEWPMYVFDTIPMLTVMIIFYIWYPSRI  160
            YRV E + G +GYL+ HE   YV D + ML  +++  +++P  +
Sbjct  163  YRVAELAQGWDGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.329    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00012054

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  149     1e-46


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 149 bits (380),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 9/164 (5%)

Query  1    MTLGRVIRAVRGERFSIISLNWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAV  56
            MTLGR+IRA+ GE  S +   W T  FV GD+LS V+Q +  GL+ +  ++        +
Sbjct  48   MTLGRIIRAL-GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENI  106

Query  57   VLIGLFIQLISFGIFGLTAVMFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSV  116
            ++ GL  Q+   GIF + A  F+RR+  +           WK  L  L+  S LI++RS+
Sbjct  107  MIAGLAFQVAFLGIFIILAADFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSI  162

Query  117  YRVVEYSVGSNGYLLQHEWPMYVFDTIPMLTVMIIFYIWYPSRI  160
            YRV E + G +GYL+ HE   YV D + ML  +++  +++P  +
Sbjct  163  YRVAELAQGWDGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.329    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00018070

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  191     2e-61


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 191 bits (488),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 117/204 (57%), Gaps = 9/204 (4%)

Query  62   ELYGYGGRIGAHNNTASLFSYAISNDGVLLAPALFAASIYMTLGRVIRAVRGERFSIISL  121
            E+ GY GRI +HNN  SL  + +    +LLAPA  AA+IYMTLGR+IRA+ GE  S +  
Sbjct  8    EVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRAL-GESLSRLRP  66

Query  122  NWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAVVLIGLFIQLISFGIFGLTAV  177
             W T  FV GD+LS V+Q +  GL+ +  ++        +++ GL  Q+   GIF + A 
Sbjct  67   RWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENIMIAGLAFQVAFLGIFIILAA  126

Query  178  MFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSVYRVVEYSVGSNGYLLQHEWP  237
             F+RR+  +           WK  L  L+  S LI++RS+YRV E + G +GYL+ HE  
Sbjct  127  DFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSIYRVAELAQGWDGYLMTHEVY  182

Query  238  MYVFDTIPMLTVMIIFYIWYPSRI  261
             YV D + ML  +++  +++P  +
Sbjct  183  FYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.328    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00018069

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  203     1e-65


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 203 bits (519),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 80/208 (38%), Positives = 119/208 (57%), Gaps = 9/208 (4%)

Query  47   GGIFELYGYGGRIGAHNNTASLFSYAISNDGVLLAPALFAASIYMTLGRVIRAVRGERFS  106
            G I E+ GY GRI +HNN  SL  + +    +LLAPA  AA+IYMTLGR+IRA+ GE  S
Sbjct  4    GCILEVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRAL-GESLS  62

Query  107  IISLNWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAVVLIGLFIQLISFGIFG  162
             +   W T  FV GD+LS V+Q +  GL+ +  ++        +++ GL  Q+   GIF 
Sbjct  63   RLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENIMIAGLAFQVAFLGIFI  122

Query  163  LTAVMFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSVYRVVEYSVGSNGYLLQ  222
            + A  F+RR+  +           WK  L  L+  S LI++RS+YRV E + G +GYL+ 
Sbjct  123  ILAADFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSIYRVAELAQGWDGYLMT  178

Query  223  HEWPMYVFDTIPMLTVMIIFYIWYPSRI  250
            HE   YV D + ML  +++  +++P  +
Sbjct  179  HEVYFYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.325    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00018071

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  198     2e-64


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 198 bits (506),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 80/208 (38%), Positives = 119/208 (57%), Gaps = 9/208 (4%)

Query  47   GGIFELYGYGGRIGAHNNTASLFSYAISNDGVLLAPALFAASIYMTLGRVIRAVRGERFS  106
            G I E+ GY GRI +HNN  SL  + +    +LLAPA  AA+IYMTLGR+IRA+ GE  S
Sbjct  4    GCILEVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRAL-GESLS  62

Query  107  IISLNWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAVVLIGLFIQLISFGIFG  162
             +   W T  FV GD+LS V+Q +  GL+ +  ++        +++ GL  Q+   GIF 
Sbjct  63   RLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENIMIAGLAFQVAFLGIFI  122

Query  163  LTAVMFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSVYRVVEYSVGSNGYLLQ  222
            + A  F+RR+  +           WK  L  L+  S LI++RS+YRV E + G +GYL+ 
Sbjct  123  ILAADFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSIYRVAELAQGWDGYLMT  178

Query  223  HEWPMYVFDTIPMLTVMIIFYIWYPSRI  250
            HE   YV D + ML  +++  +++P  +
Sbjct  179  HEVYFYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.327    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00018073

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  203     1e-65


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 203 bits (519),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 80/208 (38%), Positives = 119/208 (57%), Gaps = 9/208 (4%)

Query  47   GGIFELYGYGGRIGAHNNTASLFSYAISNDGVLLAPALFAASIYMTLGRVIRAVRGERFS  106
            G I E+ GY GRI +HNN  SL  + +    +LLAPA  AA+IYMTLGR+IRA+ GE  S
Sbjct  4    GCILEVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRAL-GESLS  62

Query  107  IISLNWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAVVLIGLFIQLISFGIFG  162
             +   W T  FV GD+LS V+Q +  GL+ +  ++        +++ GL  Q+   GIF 
Sbjct  63   RLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENIMIAGLAFQVAFLGIFI  122

Query  163  LTAVMFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSVYRVVEYSVGSNGYLLQ  222
            + A  F+RR+  +           WK  L  L+  S LI++RS+YRV E + G +GYL+ 
Sbjct  123  ILAADFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSIYRVAELAQGWDGYLMT  178

Query  223  HEWPMYVFDTIPMLTVMIIFYIWYPSRI  250
            HE   YV D + ML  +++  +++P  +
Sbjct  179  HEVYFYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.325    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00018072

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  146     2e-45


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 146 bits (372),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 9/164 (5%)

Query  1    MTLGRVIRAVRGERFSIISLNWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAV  56
            MTLGR+IRA+ GE  S +   W T  FV GD+LS V+Q +  GL+ +  ++        +
Sbjct  48   MTLGRIIRAL-GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENI  106

Query  57   VLIGLFIQLISFGIFGLTAVMFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSV  116
            ++ GL  Q+   GIF + A  F+RR+  +           WK  L  L+  S LI++RS+
Sbjct  107  MIAGLAFQVAFLGIFIILAADFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSI  162

Query  117  YRVVEYSVGSNGYLLQHEWPMYVFDTIPMLTVMIIFYIWYPSRI  160
            YRV E + G +GYL+ HE   YV D + ML  +++  +++P  +
Sbjct  163  YRVAELAQGWDGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.329    0.142    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00018074

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  193     2e-62


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 193 bits (494),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 117/204 (57%), Gaps = 9/204 (4%)

Query  62   ELYGYGGRIGAHNNTASLFSYAISNDGVLLAPALFAASIYMTLGRVIRAVRGERFSIISL  121
            E+ GY GRI +HNN  SL  + +    +LLAPA  AA+IYMTLGR+IRA+ GE  S +  
Sbjct  8    EVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRAL-GESLSRLRP  66

Query  122  NWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAVVLIGLFIQLISFGIFGLTAV  177
             W T  FV GD+LS V+Q +  GL+ +  ++        +++ GL  Q+   GIF + A 
Sbjct  67   RWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENIMIAGLAFQVAFLGIFIILAA  126

Query  178  MFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSVYRVVEYSVGSNGYLLQHEWP  237
             F+RR+  +           WK  L  L+  S LI++RS+YRV E + G +GYL+ HE  
Sbjct  127  DFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSIYRVAELAQGWDGYLMTHEVY  182

Query  238  MYVFDTIPMLTVMIIFYIWYPSRI  261
             YV D + ML  +++  +++P  +
Sbjct  183  FYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.327    0.140    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00012055

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  196     2e-63


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 196 bits (500),  Expect = 2e-63, Method: Composition-based stats.
 Identities = 80/208 (38%), Positives = 119/208 (57%), Gaps = 9/208 (4%)

Query  47   GGIFELYGYGGRIGAHNNTASLFSYAISNDGVLLAPALFAASIYMTLGRVIRAVRGERFS  106
            G I E+ GY GRI +HNN  SL  + +    +LLAPA  AA+IYMTLGR+IRA+ GE  S
Sbjct  4    GCILEVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRAL-GESLS  62

Query  107  IISLNWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAVVLIGLFIQLISFGIFG  162
             +   W T  FV GD+LS V+Q +  GL+ +  ++        +++ GL  Q+   GIF 
Sbjct  63   RLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENIMIAGLAFQVAFLGIFI  122

Query  163  LTAVMFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSVYRVVEYSVGSNGYLLQ  222
            + A  F+RR+  +           WK  L  L+  S LI++RS+YRV E + G +GYL+ 
Sbjct  123  ILAADFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSIYRVAELAQGWDGYLMT  178

Query  223  HEWPMYVFDTIPMLTVMIIFYIWYPSRI  250
            HE   YV D + ML  +++  +++P  +
Sbjct  179  HEVYFYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.328    0.141    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00012056

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  155     4e-48


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 155 bits (394),  Expect = 4e-48, Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 9/164 (5%)

Query  1    MTLGRVIRAVRGERFSIISLNWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAV  56
            MTLGR+IRA+ GE  S +   W T  FV GD+LS V+Q +  GL+ +  ++        +
Sbjct  48   MTLGRIIRAL-GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENI  106

Query  57   VLIGLFIQLISFGIFGLTAVMFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSV  116
            ++ GL  Q+   GIF + A  F+RR+  +           WK  L  L+  S LI++RS+
Sbjct  107  MIAGLAFQVAFLGIFIILAADFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSI  162

Query  117  YRVVEYSVGSNGYLLQHEWPMYVFDTIPMLTVMIIFYIWYPSRI  160
            YRV E + G +GYL+ HE   YV D + ML  +++  +++P  +
Sbjct  163  YRVAELAQGWDGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.326    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00012057

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  149     1e-46


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 149 bits (380),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 9/164 (5%)

Query  1    MTLGRVIRAVRGERFSIISLNWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAV  56
            MTLGR+IRA+ GE  S +   W T  FV GD+LS V+Q +  GL+ +  ++        +
Sbjct  48   MTLGRIIRAL-GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENI  106

Query  57   VLIGLFIQLISFGIFGLTAVMFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSV  116
            ++ GL  Q+   GIF + A  F+RR+  +           WK  L  L+  S LI++RS+
Sbjct  107  MIAGLAFQVAFLGIFIILAADFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSI  162

Query  117  YRVVEYSVGSNGYLLQHEWPMYVFDTIPMLTVMIIFYIWYPSRI  160
            YRV E + G +GYL+ HE   YV D + ML  +++  +++P  +
Sbjct  163  YRVAELAQGWDGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.329    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00012058

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  198     2e-63


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 198 bits (506),  Expect = 2e-63, Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 117/204 (57%), Gaps = 9/204 (4%)

Query  62   ELYGYGGRIGAHNNTASLFSYAISNDGVLLAPALFAASIYMTLGRVIRAVRGERFSIISL  121
            E+ GY GRI +HNN  SL  + +    +LLAPA  AA+IYMTLGR+IRA+ GE  S +  
Sbjct  8    EVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRAL-GESLSRLRP  66

Query  122  NWLTKTFVLGDILSFVVQGSSIGLSVTGHATG----ATAVVLIGLFIQLISFGIFGLTAV  177
             W T  FV GD+LS V+Q +  GL+ +  ++        +++ GL  Q+   GIF + A 
Sbjct  67   RWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENIMIAGLAFQVAFLGIFIILAA  126

Query  178  MFYRRIMEAPTPQCHNADLPWKRTLEMLFGVSALIIVRSVYRVVEYSVGSNGYLLQHEWP  237
             F+RR+  +           WK  L  L+  S LI++RS+YRV E + G +GYL+ HE  
Sbjct  127  DFHRRVRRSTLRL----SRRWKLFLLALYAASLLILIRSIYRVAELAQGWDGYLMTHEVY  182

Query  238  MYVFDTIPMLTVMIIFYIWYPSRI  261
             YV D + ML  +++  +++P  +
Sbjct  183  FYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.325    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00012059

Length=448


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00012060

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  119     6e-33


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 119 bits (301),  Expect = 6e-33, Method: Composition-based stats.
 Identities = 44/103 (43%), Positives = 59/103 (57%), Gaps = 3/103 (3%)

Query  96   ARKCLARMNEAKYPLGKLQHLAGAHKAIVDAL-TKLLPSSSSADEILPTLIYTLITCPPE  154
            A++ L ++NEAK P  KL+ L    K I +AL       S  AD++LP LIY LI   P 
Sbjct  4    AQQELKKLNEAKSPREKLKCLLRTCKLITEALSKSNRDESLGADDLLPILIYVLIRANPP  63

Query  155  GINIISNLLFIQRFRSTKKIDGETAYCLTNLEAAISFLENVEL  197
              N+ SNL FI  FR    + GE  Y LT LEAA+ F+E+++ 
Sbjct  64   --NLYSNLQFISEFRDPDLLSGEEGYYLTTLEAALEFIESLDP  104



Lambda      K        H        a         alpha
   0.311    0.128    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00012061

Length=650


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 821458030


Query= TCONS_00018075

Length=493


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00012062

Length=650


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 821458030


Query= TCONS_00012063

Length=557
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         280     3e-89
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            63.6    2e-11


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 280 bits (719),  Expect = 3e-89, Method: Composition-based stats.
 Identities = 123/464 (27%), Positives = 200/464 (43%), Gaps = 19/464 (4%)

Query  59   WSLLISTCIAMEGYDICLVNNFYAFPQFNRKYGELTSKGDYQVPARWQAGLSNGAAVGEI  118
             +L+ +    + GYD  ++  F     F + +G   S       +     + +  +VG  
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  119  IGLFLNGWASERFGYRYTLITCLILITAFTAIFFTAP---NVQALLAAEILAGVPWGVFQ  175
            IG    G   +RFG + +L+   +L      +   A    +V  L+   +L G+  G   
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  176  TLTITYASEVCPVALRGYLTTYVNFCWGLGQLIGVGVIRSMIDRNDEWAYRIPYGLQWMW  235
             L   Y SE+ P  LRG L +        G L+       +   ++   +RIP GLQ + 
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVP  180

Query  236  PVPLLIGILLAPESPWWLVRKGRTREAKKALLRLTTVQEDFDADETIAMMVHTTALEEKI  295
             + L+IG+L  PESP WLV KGR  EA++ L +L  V    D D  +  +    +LE   
Sbjct  181  ALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVP---DVDRELDEIK--DSLEAGQ  235

Query  296  TQGASYLDCFKG--TDLRRTEIVCMVWAMQNLSG-NSFSNYSTYFLEQAGLDTSKAYSFA  352
                +         T  +R  I  M+   Q L+G N+   YST   E  GL  S   +  
Sbjct  236  EAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTII  295

Query  353  MGQYGINMAGVFGAWFLMTLGVGRRTLYLCGLCGLCVMLLVMGFLGLVPEAHRDQASLAT  412
            +G   +N    F A FL+    GRR L L G  G+ +  +++G + L+  +  D A +  
Sbjct  296  VG--VVNFVFTFIAIFLVDR-FGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVA  352

Query  413  GSMMICWALVYQLTVGTVAYSLVAELSTRRLQIKTVVLGRNLYNVVGIICGVFTPYML-N  471
               +  +   + +  G V + +V+EL    ++ K + L      +   + G   P +   
Sbjct  353  IVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDA  412

Query  472  PGAWDWGNYTGFFWGGICFLCIIYTYFRVPEPRGRSFAELDLLF  515
             G      YT F + G+  L II+ +F VPE +GR+  E+D LF
Sbjct  413  IGLG----YTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 63.6 bits (155),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 95/320 (30%), Gaps = 40/320 (13%)

Query  109  LSNGAAVGEIIGLFLNGWASERFGYRYTLITCLILITAFTAIFFTAPNVQALLAAEILAG  168
            L    ++G  +   L G  S+RFG R  L+  L+L      +   A ++  LL   +L G
Sbjct  37   LLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG  96

Query  169  VPWGVFQTLTITYASEVCPVALRGYLTTYVNFCWGLGQLIGVGVIRSMIDRNDEWAYRIP  228
            +  G      +   ++  P   RG     V+  +GLG  +G  +   +            
Sbjct  97   LGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASL---------  147

Query  229  YGLQWMWPVPLLIGILLAPESPWWLVRKGRTREAKKALLRLTTVQEDFDADETIAMMVHT  288
            +G +  + +  ++ +L A      L R     +  K                        
Sbjct  148  FGWRAAFLILAILSLLAAV--LLLLPRPPPESKRPK------------------------  181

Query  289  TALEEKITQGASYLDCFKGTDLRRTEIVCMVWAMQNLSGNSFSNYSTYFLEQAGLDTSKA  348
               EE                +    +  +++     +      Y   + E  GL    A
Sbjct  182  -PAEEARLSLIVAWKALLRDPVLWLLLALLLFGF---AFFGLLTYLPLYQEVLGLSALLA  237

Query  349  YS-FAMGQYGINMAGVFGAWFLMTLGVGRRTLYLCGLCGLCVMLLVMGFLGLVPEAHRDQ  407
                 +G     +  +        LG  RR L    L  L  + L++  L L        
Sbjct  238  GLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLA  297

Query  408  ASLATGSMMICWALVYQLTV  427
              L      + +  +  L  
Sbjct  298  LLLLGFGFGLVFPALNALVS  317



Lambda      K        H        a         alpha
   0.325    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 694909020


Query= TCONS_00012067

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460860 pfam03248, Rer1, Rer1 family. RER1 family protein are ...  226     3e-77


>CDD:460860 pfam03248, Rer1, Rer1 family.  RER1 family protein are involved 
in involved in the retrieval of some endoplasmic reticulum 
membrane proteins from the early golgi compartment. The C-terminus 
of yeast Rer1p interacts with a coatomer complex.
Length=167

 Score = 226 bits (578),  Expect = 3e-77, Method: Composition-based stats.
 Identities = 100/149 (67%), Positives = 118/149 (79%), Gaps = 4/149 (3%)

Query  16   AQTSKLARQYQTSLDALTPYTTYRWIGTVVLLLIFFLRIILAQGWYIVAYTLGIYLLNLF  75
                KL+R+YQ  LD  TP+T YRWIG +VLLL+F LRI L QGWYIV Y LGIYLLNLF
Sbjct  1    RWKHKLSRKYQHYLDKSTPHTKYRWIGFLVLLLLFLLRIYLVQGWYIVTYALGIYLLNLF  60

Query  76   LLFLQPKFDPSLTQDEGLEDGDASASLPTKQDDEFRPFIRRLPEFKFWHSATRAIAIGFV  135
            + FL PKFDPSL QDE LEDG    SLPTK DDEFRPFIRRLPEFKFW+S+TRA  I   
Sbjct  61   IAFLTPKFDPSLEQDE-LEDG---PSLPTKNDDEFRPFIRRLPEFKFWYSSTRATLIALF  116

Query  136  CSWFPVFDIPVFWPVLVVYWIILFILTSK  164
            C++F +FDIPVFWP+L++Y+I+LF+LT +
Sbjct  117  CTFFSIFDIPVFWPILLMYFIVLFVLTMR  145



Lambda      K        H        a         alpha
   0.329    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00012064

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460860 pfam03248, Rer1, Rer1 family. RER1 family protein are ...  279     4e-98


>CDD:460860 pfam03248, Rer1, Rer1 family.  RER1 family protein are involved 
in involved in the retrieval of some endoplasmic reticulum 
membrane proteins from the early golgi compartment. The C-terminus 
of yeast Rer1p interacts with a coatomer complex.
Length=167

 Score = 279 bits (716),  Expect = 4e-98, Method: Composition-based stats.
 Identities = 119/171 (70%), Positives = 139/171 (81%), Gaps = 4/171 (2%)

Query  16   AQTSKLARQYQTSLDALTPYTTYRWIGTVVLLLIFFLRIILAQGWYIVAYTLGIYLLNLF  75
                KL+R+YQ  LD  TP+T YRWIG +VLLL+F LRI L QGWYIV Y LGIYLLNLF
Sbjct  1    RWKHKLSRKYQHYLDKSTPHTKYRWIGFLVLLLLFLLRIYLVQGWYIVTYALGIYLLNLF  60

Query  76   LLFLQPKFDPSLTQDEGLEDGDASASLPTKQDDEFRPFIRRLPEFKFWHSATRAIAIGFV  135
            + FL PKFDPSL QDE LEDG    SLPTK DDEFRPFIRRLPEFKFW+S+TRA  I   
Sbjct  61   IAFLTPKFDPSLEQDE-LEDG---PSLPTKNDDEFRPFIRRLPEFKFWYSSTRATLIALF  116

Query  136  CSWFPVFDIPVFWPVLVVYWIILFILTMRRQIQHMIKYRYVPFSFGKTRYG  186
            C++F +FDIPVFWP+L++Y+I+LF+LTMRRQI+HMIKY+YVPF FGK +YG
Sbjct  117  CTFFSIFDIPVFWPILLMYFIVLFVLTMRRQIKHMIKYKYVPFDFGKKKYG  167



Lambda      K        H        a         alpha
   0.330    0.144    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00012065

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00012066

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460860 pfam03248, Rer1, Rer1 family. RER1 family protein are ...  207     8e-71


>CDD:460860 pfam03248, Rer1, Rer1 family.  RER1 family protein are involved 
in involved in the retrieval of some endoplasmic reticulum 
membrane proteins from the early golgi compartment. The C-terminus 
of yeast Rer1p interacts with a coatomer complex.
Length=167

 Score = 207 bits (530),  Expect = 8e-71, Method: Composition-based stats.
 Identities = 90/126 (71%), Positives = 106/126 (84%), Gaps = 4/126 (3%)

Query  2    FAVAYTLGIYLLNLFLLFLQPKFDPSLTQDEGLEDGDASASLPTKQDDEFRPFIRRLPEF  61
            + V Y LGIYLLNLF+ FL PKFDPSL QDE LEDG    SLPTK DDEFRPFIRRLPEF
Sbjct  46   YIVTYALGIYLLNLFIAFLTPKFDPSLEQDE-LEDG---PSLPTKNDDEFRPFIRRLPEF  101

Query  62   KFWHSATRAIAIGFVCSWFPVFDIPVFWPVLVVYWIILFILTMRRQIQHMIKYRYVPFSF  121
            KFW+S+TRA  I   C++F +FDIPVFWP+L++Y+I+LF+LTMRRQI+HMIKY+YVPF F
Sbjct  102  KFWYSSTRATLIALFCTFFSIFDIPVFWPILLMYFIVLFVLTMRRQIKHMIKYKYVPFDF  161

Query  122  GKTRYG  127
            GK +YG
Sbjct  162  GKKKYG  167



Lambda      K        H        a         alpha
   0.333    0.147    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00018077

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460860 pfam03248, Rer1, Rer1 family. RER1 family protein are ...  155     3e-50


>CDD:460860 pfam03248, Rer1, Rer1 family.  RER1 family protein are involved 
in involved in the retrieval of some endoplasmic reticulum 
membrane proteins from the early golgi compartment. The C-terminus 
of yeast Rer1p interacts with a coatomer complex.
Length=167

 Score = 155 bits (394),  Expect = 3e-50, Method: Composition-based stats.
 Identities = 71/104 (68%), Positives = 85/104 (82%), Gaps = 4/104 (4%)

Query  2    FAVAYTLGIYLLNLFLLFLQPKFDPSLTQDEGLEDGDASASLPTKQDDEFRPFIRRLPEF  61
            + V Y LGIYLLNLF+ FL PKFDPSL QDE LEDG    SLPTK DDEFRPFIRRLPEF
Sbjct  46   YIVTYALGIYLLNLFIAFLTPKFDPSLEQDE-LEDG---PSLPTKNDDEFRPFIRRLPEF  101

Query  62   KFWHSATRAIAIGFVCSWFPVFDIPVFWPVLVVYWIILFILTSK  105
            KFW+S+TRA  I   C++F +FDIPVFWP+L++Y+I+LF+LT +
Sbjct  102  KFWYSSTRATLIALFCTFFSIFDIPVFWPILLMYFIVLFVLTMR  145



Lambda      K        H        a         alpha
   0.331    0.145    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00018078

Length=167
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460860 pfam03248, Rer1, Rer1 family. RER1 family protein are ...  228     2e-78


>CDD:460860 pfam03248, Rer1, Rer1 family.  RER1 family protein are involved 
in involved in the retrieval of some endoplasmic reticulum 
membrane proteins from the early golgi compartment. The C-terminus 
of yeast Rer1p interacts with a coatomer complex.
Length=167

 Score = 228 bits (584),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 102/152 (67%), Positives = 120/152 (79%), Gaps = 4/152 (3%)

Query  16   AQTSKLARQYQTSLDALTPYTTYRWIGTVVLLLIFFLRIILAQGWYIVAYTLGIYLLNLF  75
                KL+R+YQ  LD  TP+T YRWIG +VLLL+F LRI L QGWYIV Y LGIYLLNLF
Sbjct  1    RWKHKLSRKYQHYLDKSTPHTKYRWIGFLVLLLLFLLRIYLVQGWYIVTYALGIYLLNLF  60

Query  76   LLFLQPKFDPSLTQDEGLEDGDASASLPTKQDDEFRPFIRRLPEFKFWHSATRAIAIGFV  135
            + FL PKFDPSL QDE LEDG    SLPTK DDEFRPFIRRLPEFKFW+S+TRA  I   
Sbjct  61   IAFLTPKFDPSLEQDE-LEDG---PSLPTKNDDEFRPFIRRLPEFKFWYSSTRATLIALF  116

Query  136  CSWFPVFDIPVFWPVLVVYWIILFILTSKLQI  167
            C++F +FDIPVFWP+L++Y+I+LF+LT + QI
Sbjct  117  CTFFSIFDIPVFWPILLMYFIVLFVLTMRRQI  148



Lambda      K        H        a         alpha
   0.329    0.144    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00012068

Length=720


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 910925152


Query= TCONS_00018079

Length=658


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 833256350


Query= TCONS_00018080

Length=720


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 910925152


Query= TCONS_00012070

Length=658


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 833256350


Query= TCONS_00012071

Length=720


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0667    0.140     1.90     42.6     43.6 

Effective search space used: 910925152


Query= TCONS_00012072

Length=537


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00012074

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397885 pfam03985, Paf1, Paf1. Members of this family are comp...  153     5e-42


>CDD:397885 pfam03985, Paf1, Paf1.  Members of this family are components 
of the RNA polymerase II associated Paf1 complex. The Paf1 
complex functions during the elongation phase of transcription 
in conjunction with Spt4-Spt5 and Spt16-Pob3i.
Length=416

 Score = 153 bits (388),  Expect = 5e-42, Method: Composition-based stats.
 Identities = 118/505 (23%), Positives = 181/505 (36%), Gaps = 122/505 (24%)

Query  18   IASLRYRNDLPPPDMPPKFLDVPHDGLRRFLTPGFASNLARREEPNIDVDAEGGMPIDLV  77
            IA +RY N+LP P   PK L  P D   RF+    +++L R  +  +  D + GMP+DL+
Sbjct  1    IARVRYCNNLPDPPFDPKLLTYPFDP-NRFVEYK-STSLERSLKHKLLTDHDLGMPLDLI  58

Query  78   GIPGLHLGDESAIMAPETPQPIDPADLPLL----MTLDQLKNPAPKNANVSFLRRTQYIS  133
             IPG    D+S    P     +DP D  LL     +    K     + NVS+LRRT+YIS
Sbjct  59   NIPGYFDDDDS---KPFDNVKLDPKDRKLLEDDGASPQDSKRSRQHSKNVSWLRRTEYIS  115

Query  134  AGLRAPDGPKVAPIRAKARSADKTKSQDDPMY------IKKYIQKGFDIAYPDSRHVGED  187
                   G       AK     K   Q++ +Y      IK  I+K F+ A          
Sbjct  116  TEFNRF-GVSADKQEAKLGYNLKKNFQEEDLYRDRPSQIKA-IEKTFEDA----------  163

Query  188  TPNRIKGHTPTKIEVDAWANPVHPDNPKLKPVGFYPLLPDLQGFPDPGGFVQFKFDKAPV  247
                       K  ++      HP    +KPV  +PLLPD + +  P  + Q KFD  P 
Sbjct  164  -----------KKPLEDLK---HPSKKNVKPVEAWPLLPDFEMWKYP--YAQVKFDGDPA  207

Query  248  -----QGVSGKRD-ERMDVAILLPSAPEERVCQEHATKAALHKSNPELYPDPGPIPWDYD  301
                 + +      ERM  A+  P   EE                 +             
Sbjct  208  PDSKEKDLPVAEQKERMSQAMFRPVMDEE---------------GEQF----------VA  242

Query  302  LFLPEKKDAVKEVIASLRLSNPDRDSEVLYTHEGTDGIRFHRYERMRTYATSAQTLGNES  361
             FLP ++   K +         D +  + Y  +       + Y+  R Y    +     S
Sbjct  243  YFLPTEETLAKRL--------RDLEEGIDYADDDE-----YEYKLAREYNWKVEN--KAS  287

Query  362  KQRDVALTL-FDPAEAKEGQQTKQRGAYYYPILGKTRLKPERARTIAQAGLAPTRPKTKE  420
            K  +  L   F              G YY  +  + RL+  R +  A           +E
Sbjct  288  KGYEENLFFVFR----------DDDGVYYNELETRVRLRKRRVKAGA-----------RE  326

Query  421  DQVDQIQVVVRDPDEAEVYKRSLHRAAIDPKFAKTLPPPPEPESAPEQEHPETHDSDRGE  480
               D++ V +R P+E E+      R  ++             +   E+E  E  +    E
Sbjct  327  SNNDKLVVTLRPPNEEELKAMDKRRMQLEF-----------EKEEEEEEEEEEEEESEEE  375

Query  481  EVTEDRNHQPTAAEVSDDEDKMSDE  505
            +   +          ++ ED+ SDE
Sbjct  376  DEESEEEEDAEEGSSAEGEDESSDE  400



Lambda      K        H        a         alpha
   0.313    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00018081

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459680 pfam00121, TIM, Triosephosphate isomerase                  204     8e-66


>CDD:459680 pfam00121, TIM, Triosephosphate isomerase.  
Length=244

 Score = 204 bits (521),  Expect = 8e-66, Method: Composition-based stats.
 Identities = 79/261 (30%), Positives = 121/261 (46%), Gaps = 32/261 (12%)

Query  16   LLIISLKMYFPPDRTLSYLRDLLSPANKIVLPQNRSRLLLALIPDFLTIYPCAQIIKDWA  75
            ++  + KM          L +L     + +  ++   +++A  P F  +   A+++    
Sbjct  2    IIAGNWKMNGTLAEAAELLAEL----AEALADESGVEVVVA--PPFTYLSAVAELLG---  52

Query  76   AGFQLPSDVDPEQPPFLLGAQDCFWEAAGAYTGEVSPASLRSLGVRLVELGHAERRALFG  135
                             +GAQ+   E +GA+TGE+S   L+ LGV  V +GH+ERR  FG
Sbjct  53   -------------SNIKVGAQNVDPEESGAFTGEISAEMLKDLGVSYVIIGHSERRQYFG  99

Query  136  ETDDQVARKAAAAVDQGLIPLVCIGEVTAPGAIASEAVGLAVRECAGQMRAVLDAIP-SA  194
            ETD+ VA+K  AA+  GL P++C+GE      +     G      A Q+ A L  +    
Sbjct  100  ETDEDVAKKVKAALKAGLTPILCVGET-----LEEREAGKTEEVVARQLDAALAGLGAEQ  154

Query  195  APVIFAYEPVWAIGKAKPAGVDHVAAVVEGIRAVIGKREGE----VRVLYGGSAGPGLWG  250
              ++ AYEPVWAIG  K A  +    V   IRAV+ +   E    VR+LYGGS  PG   
Sbjct  155  KNLVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYKEVAEGVRILYGGSVKPGNAA  214

Query  251  AGGLGKAVDGMFLGRFAHEIE  271
                   +DG  +G  + + E
Sbjct  215  ELAAQPDIDGALVGGASLKAE  235



Lambda      K        H        a         alpha
   0.320    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00012075

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459680 pfam00121, TIM, Triosephosphate isomerase                  204     8e-66


>CDD:459680 pfam00121, TIM, Triosephosphate isomerase.  
Length=244

 Score = 204 bits (521),  Expect = 8e-66, Method: Composition-based stats.
 Identities = 79/261 (30%), Positives = 121/261 (46%), Gaps = 32/261 (12%)

Query  16   LLIISLKMYFPPDRTLSYLRDLLSPANKIVLPQNRSRLLLALIPDFLTIYPCAQIIKDWA  75
            ++  + KM          L +L     + +  ++   +++A  P F  +   A+++    
Sbjct  2    IIAGNWKMNGTLAEAAELLAEL----AEALADESGVEVVVA--PPFTYLSAVAELLG---  52

Query  76   AGFQLPSDVDPEQPPFLLGAQDCFWEAAGAYTGEVSPASLRSLGVRLVELGHAERRALFG  135
                             +GAQ+   E +GA+TGE+S   L+ LGV  V +GH+ERR  FG
Sbjct  53   -------------SNIKVGAQNVDPEESGAFTGEISAEMLKDLGVSYVIIGHSERRQYFG  99

Query  136  ETDDQVARKAAAAVDQGLIPLVCIGEVTAPGAIASEAVGLAVRECAGQMRAVLDAIP-SA  194
            ETD+ VA+K  AA+  GL P++C+GE      +     G      A Q+ A L  +    
Sbjct  100  ETDEDVAKKVKAALKAGLTPILCVGET-----LEEREAGKTEEVVARQLDAALAGLGAEQ  154

Query  195  APVIFAYEPVWAIGKAKPAGVDHVAAVVEGIRAVIGKREGE----VRVLYGGSAGPGLWG  250
              ++ AYEPVWAIG  K A  +    V   IRAV+ +   E    VR+LYGGS  PG   
Sbjct  155  KNLVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYKEVAEGVRILYGGSVKPGNAA  214

Query  251  AGGLGKAVDGMFLGRFAHEIE  271
                   +DG  +G  + + E
Sbjct  215  ELAAQPDIDGALVGGASLKAE  235



Lambda      K        H        a         alpha
   0.320    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00018082

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459680 pfam00121, TIM, Triosephosphate isomerase                  204     8e-66


>CDD:459680 pfam00121, TIM, Triosephosphate isomerase.  
Length=244

 Score = 204 bits (521),  Expect = 8e-66, Method: Composition-based stats.
 Identities = 79/261 (30%), Positives = 121/261 (46%), Gaps = 32/261 (12%)

Query  16   LLIISLKMYFPPDRTLSYLRDLLSPANKIVLPQNRSRLLLALIPDFLTIYPCAQIIKDWA  75
            ++  + KM          L +L     + +  ++   +++A  P F  +   A+++    
Sbjct  2    IIAGNWKMNGTLAEAAELLAEL----AEALADESGVEVVVA--PPFTYLSAVAELLG---  52

Query  76   AGFQLPSDVDPEQPPFLLGAQDCFWEAAGAYTGEVSPASLRSLGVRLVELGHAERRALFG  135
                             +GAQ+   E +GA+TGE+S   L+ LGV  V +GH+ERR  FG
Sbjct  53   -------------SNIKVGAQNVDPEESGAFTGEISAEMLKDLGVSYVIIGHSERRQYFG  99

Query  136  ETDDQVARKAAAAVDQGLIPLVCIGEVTAPGAIASEAVGLAVRECAGQMRAVLDAIP-SA  194
            ETD+ VA+K  AA+  GL P++C+GE      +     G      A Q+ A L  +    
Sbjct  100  ETDEDVAKKVKAALKAGLTPILCVGET-----LEEREAGKTEEVVARQLDAALAGLGAEQ  154

Query  195  APVIFAYEPVWAIGKAKPAGVDHVAAVVEGIRAVIGKREGE----VRVLYGGSAGPGLWG  250
              ++ AYEPVWAIG  K A  +    V   IRAV+ +   E    VR+LYGGS  PG   
Sbjct  155  KNLVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYKEVAEGVRILYGGSVKPGNAA  214

Query  251  AGGLGKAVDGMFLGRFAHEIE  271
                   +DG  +G  + + E
Sbjct  215  ELAAQPDIDGALVGGASLKAE  235



Lambda      K        H        a         alpha
   0.320    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00012076

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397885 pfam03985, Paf1, Paf1. Members of this family are comp...  153     5e-42


>CDD:397885 pfam03985, Paf1, Paf1.  Members of this family are components 
of the RNA polymerase II associated Paf1 complex. The Paf1 
complex functions during the elongation phase of transcription 
in conjunction with Spt4-Spt5 and Spt16-Pob3i.
Length=416

 Score = 153 bits (388),  Expect = 5e-42, Method: Composition-based stats.
 Identities = 118/505 (23%), Positives = 181/505 (36%), Gaps = 122/505 (24%)

Query  18   IASLRYRNDLPPPDMPPKFLDVPHDGLRRFLTPGFASNLARREEPNIDVDAEGGMPIDLV  77
            IA +RY N+LP P   PK L  P D   RF+    +++L R  +  +  D + GMP+DL+
Sbjct  1    IARVRYCNNLPDPPFDPKLLTYPFDP-NRFVEYK-STSLERSLKHKLLTDHDLGMPLDLI  58

Query  78   GIPGLHLGDESAIMAPETPQPIDPADLPLL----MTLDQLKNPAPKNANVSFLRRTQYIS  133
             IPG    D+S    P     +DP D  LL     +    K     + NVS+LRRT+YIS
Sbjct  59   NIPGYFDDDDS---KPFDNVKLDPKDRKLLEDDGASPQDSKRSRQHSKNVSWLRRTEYIS  115

Query  134  AGLRAPDGPKVAPIRAKARSADKTKSQDDPMY------IKKYIQKGFDIAYPDSRHVGED  187
                   G       AK     K   Q++ +Y      IK  I+K F+ A          
Sbjct  116  TEFNRF-GVSADKQEAKLGYNLKKNFQEEDLYRDRPSQIKA-IEKTFEDA----------  163

Query  188  TPNRIKGHTPTKIEVDAWANPVHPDNPKLKPVGFYPLLPDLQGFPDPGGFVQFKFDKAPV  247
                       K  ++      HP    +KPV  +PLLPD + +  P  + Q KFD  P 
Sbjct  164  -----------KKPLEDLK---HPSKKNVKPVEAWPLLPDFEMWKYP--YAQVKFDGDPA  207

Query  248  -----QGVSGKRD-ERMDVAILLPSAPEERVCQEHATKAALHKSNPELYPDPGPIPWDYD  301
                 + +      ERM  A+  P   EE                 +             
Sbjct  208  PDSKEKDLPVAEQKERMSQAMFRPVMDEE---------------GEQF----------VA  242

Query  302  LFLPEKKDAVKEVIASLRLSNPDRDSEVLYTHEGTDGIRFHRYERMRTYATSAQTLGNES  361
             FLP ++   K +         D +  + Y  +       + Y+  R Y    +     S
Sbjct  243  YFLPTEETLAKRL--------RDLEEGIDYADDDE-----YEYKLAREYNWKVEN--KAS  287

Query  362  KQRDVALTL-FDPAEAKEGQQTKQRGAYYYPILGKTRLKPERARTIAQAGLAPTRPKTKE  420
            K  +  L   F              G YY  +  + RL+  R +  A           +E
Sbjct  288  KGYEENLFFVFR----------DDDGVYYNELETRVRLRKRRVKAGA-----------RE  326

Query  421  DQVDQIQVVVRDPDEAEVYKRSLHRAAIDPKFAKTLPPPPEPESAPEQEHPETHDSDRGE  480
               D++ V +R P+E E+      R  ++             +   E+E  E  +    E
Sbjct  327  SNNDKLVVTLRPPNEEELKAMDKRRMQLEF-----------EKEEEEEEEEEEEEESEEE  375

Query  481  EVTEDRNHQPTAAEVSDDEDKMSDE  505
            +   +          ++ ED+ SDE
Sbjct  376  DEESEEEEDAEEGSSAEGEDESSDE  400



Lambda      K        H        a         alpha
   0.313    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00012077

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00018083

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00012078

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459680 pfam00121, TIM, Triosephosphate isomerase                  204     8e-66


>CDD:459680 pfam00121, TIM, Triosephosphate isomerase.  
Length=244

 Score = 204 bits (521),  Expect = 8e-66, Method: Composition-based stats.
 Identities = 79/261 (30%), Positives = 121/261 (46%), Gaps = 32/261 (12%)

Query  16   LLIISLKMYFPPDRTLSYLRDLLSPANKIVLPQNRSRLLLALIPDFLTIYPCAQIIKDWA  75
            ++  + KM          L +L     + +  ++   +++A  P F  +   A+++    
Sbjct  2    IIAGNWKMNGTLAEAAELLAEL----AEALADESGVEVVVA--PPFTYLSAVAELLG---  52

Query  76   AGFQLPSDVDPEQPPFLLGAQDCFWEAAGAYTGEVSPASLRSLGVRLVELGHAERRALFG  135
                             +GAQ+   E +GA+TGE+S   L+ LGV  V +GH+ERR  FG
Sbjct  53   -------------SNIKVGAQNVDPEESGAFTGEISAEMLKDLGVSYVIIGHSERRQYFG  99

Query  136  ETDDQVARKAAAAVDQGLIPLVCIGEVTAPGAIASEAVGLAVRECAGQMRAVLDAIP-SA  194
            ETD+ VA+K  AA+  GL P++C+GE      +     G      A Q+ A L  +    
Sbjct  100  ETDEDVAKKVKAALKAGLTPILCVGET-----LEEREAGKTEEVVARQLDAALAGLGAEQ  154

Query  195  APVIFAYEPVWAIGKAKPAGVDHVAAVVEGIRAVIGKREGE----VRVLYGGSAGPGLWG  250
              ++ AYEPVWAIG  K A  +    V   IRAV+ +   E    VR+LYGGS  PG   
Sbjct  155  KNLVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYKEVAEGVRILYGGSVKPGNAA  214

Query  251  AGGLGKAVDGMFLGRFAHEIE  271
                   +DG  +G  + + E
Sbjct  215  ELAAQPDIDGALVGGASLKAE  235



Lambda      K        H        a         alpha
   0.320    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00012079

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459680 pfam00121, TIM, Triosephosphate isomerase                  204     8e-66


>CDD:459680 pfam00121, TIM, Triosephosphate isomerase.  
Length=244

 Score = 204 bits (521),  Expect = 8e-66, Method: Composition-based stats.
 Identities = 79/261 (30%), Positives = 121/261 (46%), Gaps = 32/261 (12%)

Query  16   LLIISLKMYFPPDRTLSYLRDLLSPANKIVLPQNRSRLLLALIPDFLTIYPCAQIIKDWA  75
            ++  + KM          L +L     + +  ++   +++A  P F  +   A+++    
Sbjct  2    IIAGNWKMNGTLAEAAELLAEL----AEALADESGVEVVVA--PPFTYLSAVAELLG---  52

Query  76   AGFQLPSDVDPEQPPFLLGAQDCFWEAAGAYTGEVSPASLRSLGVRLVELGHAERRALFG  135
                             +GAQ+   E +GA+TGE+S   L+ LGV  V +GH+ERR  FG
Sbjct  53   -------------SNIKVGAQNVDPEESGAFTGEISAEMLKDLGVSYVIIGHSERRQYFG  99

Query  136  ETDDQVARKAAAAVDQGLIPLVCIGEVTAPGAIASEAVGLAVRECAGQMRAVLDAIP-SA  194
            ETD+ VA+K  AA+  GL P++C+GE      +     G      A Q+ A L  +    
Sbjct  100  ETDEDVAKKVKAALKAGLTPILCVGET-----LEEREAGKTEEVVARQLDAALAGLGAEQ  154

Query  195  APVIFAYEPVWAIGKAKPAGVDHVAAVVEGIRAVIGKREGE----VRVLYGGSAGPGLWG  250
              ++ AYEPVWAIG  K A  +    V   IRAV+ +   E    VR+LYGGS  PG   
Sbjct  155  KNLVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYKEVAEGVRILYGGSVKPGNAA  214

Query  251  AGGLGKAVDGMFLGRFAHEIE  271
                   +DG  +G  + + E
Sbjct  215  ELAAQPDIDGALVGGASLKAE  235



Lambda      K        H        a         alpha
   0.320    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00012080

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398320 pfam04564, U-box, U-box domain. This domain is related...  90.1    9e-24


>CDD:398320 pfam04564, U-box, U-box domain.  This domain is related to the 
Ring finger pfam00097 but lacks the zinc binding residues.
Length=73

 Score = 90.1 bits (224),  Expect = 9e-24, Method: Composition-based stats.
 Identities = 32/73 (44%), Positives = 45/73 (62%), Gaps = 1/73 (1%)

Query  209  VPDYLVDGITFEIMHDPVITPSGTSFDRIGIIKYVEQSG-VDPITRVPMTVNDLRPNYAL  267
            +PD  +D ITFE+M DPVI PSG ++DR  I +++      DP TR P+T + L PN  L
Sbjct  1    IPDEFLDPITFELMTDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL  60

Query  268  KAACEEFLNKNGW  280
            KA  + +L +  W
Sbjct  61   KAKIDAWLEEKRW  73



Lambda      K        H        a         alpha
   0.315    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00018084

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460573 pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase. Thi...  172     6e-57


>CDD:460573 pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase.  This family 
of proteins contains the sugar isomerase enzymes ribose 5-phosphate 
isomerase B (rpiB), galactose isomerase subunit A 
(LacA) and galactose isomerase subunit B (LacB).
Length=134

 Score = 172 bits (440),  Expect = 6e-57, Method: Composition-based stats.
 Identities = 59/130 (45%), Positives = 78/130 (60%), Gaps = 3/130 (2%)

Query  10   IVMACDEAGQPYKEIIKAALEKNPLVESITDVGVNSTSDKTAYPHPAVAGAKLIKEGKAD  69
            I +  D AG   KE IK  LE+      + D G  S  +   YP  A   A+ +  G+AD
Sbjct  1    IAIGSDHAGFELKEEIKEYLEEKGH--EVIDFGTYSE-ESVDYPDYAHKVAEAVASGEAD  57

Query  70   RGLFICGTGLGVAIAANKVPGIRAVTAHDSFSVERSILSNDAQVLCFGQRVIGIELAKKL  129
            RG+ ICGTG+G++IAANKVPGIRA   HD +S + +   NDA VLC G RVIG ELAK++
Sbjct  58   RGILICGTGIGMSIAANKVPGIRAALCHDPYSAKLAREHNDANVLCLGARVIGPELAKEI  117

Query  130  ANEWLTYRFD  139
             + +L   F+
Sbjct  118  VDAFLNTEFE  127



Lambda      K        H        a         alpha
   0.316    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00018085

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398320 pfam04564, U-box, U-box domain. This domain is related...  80.4    4e-20


>CDD:398320 pfam04564, U-box, U-box domain.  This domain is related to the 
Ring finger pfam00097 but lacks the zinc binding residues.
Length=73

 Score = 80.4 bits (199),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 42/69 (61%), Gaps = 1/69 (1%)

Query  213  LVDGITFEIMHDPVITPSGTSFDRIGIIKYVEQSG-VDPITRVPMTVNDLRPNYALKAAC  271
             +D ITFE+M DPVI PSG ++DR  I +++      DP TR P+T + L PN  LKA  
Sbjct  5    FLDPITFELMTDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLELKAKI  64

Query  272  EEFLNKNGW  280
            + +L +  W
Sbjct  65   DAWLEEKRW  73



Lambda      K        H        a         alpha
   0.315    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00018086

Length=63
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398320 pfam04564, U-box, U-box domain. This domain is related...  66.6    2e-17


>CDD:398320 pfam04564, U-box, U-box domain.  This domain is related to the 
Ring finger pfam00097 but lacks the zinc binding residues.
Length=73

 Score = 66.6 bits (163),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 25/60 (42%), Positives = 35/60 (58%), Gaps = 1/60 (2%)

Query  1   MHDPVITPSGTSFDRIGIIKYVEQSG-VDPITRVPMTVNDLRPNYALKAACEEFLNKNGW  59
           M DPVI PSG ++DR  I +++      DP TR P+T + L PN  LKA  + +L +  W
Sbjct  14  MTDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLELKAKIDAWLEEKRW  73



Lambda      K        H        a         alpha
   0.319    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00012081

Length=158
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459982 pfam00887, ACBP, Acyl CoA binding protein                  68.4    1e-16


>CDD:459982 pfam00887, ACBP, Acyl CoA binding protein.  
Length=76

 Score = 68.4 bits (168),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 42/73 (58%), Gaps = 2/73 (3%)

Query  77   FEFATELVKMLEKEPGPEEKLGLYKYFKQARGEKP--AEPSFYQMEAKFKYNAWKEISHI  134
            FE A E VK L+ +P  EEKL LY  +KQA         P  +  + K K++AWK++  +
Sbjct  4    FEAAAEFVKKLKSKPSNEEKLELYGLYKQATVGDCNTPRPGMFDFKGKAKWDAWKKLGGM  63

Query  135  SAQKAQALYIKQV  147
            S ++A A Y++ V
Sbjct  64   SKEEAMAKYVELV  76



Lambda      K        H        a         alpha
   0.314    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00012082

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00018087

Length=144
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459982 pfam00887, ACBP, Acyl CoA binding protein                  66.9    3e-16


>CDD:459982 pfam00887, ACBP, Acyl CoA binding protein.  
Length=76

 Score = 66.9 bits (164),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 42/73 (58%), Gaps = 2/73 (3%)

Query  63   FEFATELVKMLEKEPGPEEKLGLYKYFKQARGEKP--AEPSFYQMEAKFKYNAWKEISHI  120
            FE A E VK L+ +P  EEKL LY  +KQA         P  +  + K K++AWK++  +
Sbjct  4    FEAAAEFVKKLKSKPSNEEKLELYGLYKQATVGDCNTPRPGMFDFKGKAKWDAWKKLGGM  63

Query  121  SAQKAQALYIKQV  133
            S ++A A Y++ V
Sbjct  64   SKEEAMAKYVELV  76



Lambda      K        H        a         alpha
   0.314    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00012083

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461481 pfam04922, DIE2_ALG10, DIE2/ALG10 family. The ALG10 pr...  186     2e-57


>CDD:461481 pfam04922, DIE2_ALG10, DIE2/ALG10 family.  The ALG10 protein 
from Saccharomyces cerevisiae encodes the alpha-1,2 glucosyltransferase 
of the endoplasmic reticulum. This protein has been 
characterized in rat as potassium channel regulator 1.
Length=383

 Score = 186 bits (474),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 76/183 (42%), Positives = 104/183 (57%), Gaps = 13/183 (7%)

Query  36   VPDPYLDEVFHVPQAQAYWDHRWFHWDPKITTPPGLYIWSYILCAAALVLRGSPKELNAG  95
            VP+PY+DE+FHVPQAQAY    +  WDPKITTPPGLY+ SY+L     +        +  
Sbjct  1    VPEPYMDEIFHVPQAQAYCRGNFTEWDPKITTPPGLYLLSYLLLKPLKLGCSGSVLCSLA  60

Query  96   ALRATNVAAAAVFLPWRLQTLLDALRKVRNTRPSGAWLSHTVLNICLFPPLFFFSGLYYT  155
             LR TN+    + LP  L+ LL  L+            + + +N+ LFP L+FFS LYYT
Sbjct  61   ILRLTNLLGGLLLLPLILRRLLKRLKPNSLPN----AATLSAINLALFPLLYFFSFLYYT  116

Query  156  DIVSLLAVIEAYNWDIKRSAGSWSLLKTAVFVATGLTALVLRQTNIFWVAIFLGGLQVVR  215
            D+ S   V+ +Y + ++ S    +LL        GL +L+ RQTNI WVA F+ GL V+ 
Sbjct  117  DVWSTTFVLLSYLFSLRGSHWLSALL--------GLISLLFRQTNIVWVA-FIAGLSVLD  167

Query  216  RLR  218
             LR
Sbjct  168  TLR  170



Lambda      K        H        a         alpha
   0.325    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00012084

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00012085

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00012086

Length=271


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00012087

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00018088

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00012088

Length=604
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. Thi...  113     2e-26
CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Doma...  90.4    2e-22


>CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain 
is found at the N-terminus of SMC proteins. The SMC (structural 
maintenance of chromosomes) superfamily proteins have 
ATP-binding domains at the N- and C-termini, and two extended 
coiled-coil domains separated by a hinge in the middle. The 
eukaryotic SMC proteins form two kind of heterodimers: the 
SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute 
an essential part of higher order complexes, which are 
involved in chromatin and DNA dynamics. This family also includes 
the RecF and RecN proteins that are involved in DNA 
metabolism and recombination.
Length=1161

 Score = 113 bits (283),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 102/595 (17%), Positives = 215/595 (36%), Gaps = 12/595 (2%)

Query  1    MQGRITKVLNMKPVEILSMIEEAAGTRMFEDRREKAVKTMSKKELKLREIEGLLKEEIEP  60
              G+I  +  MKP   L + EEAAG+R+   ++E   K + + E     I  L + +++ 
Sbjct  140  QGGKIEIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQE  199

Query  61   KLEKLRAEKRAFLDFQQTQNDLERLTRLVVAHDYL------RSGERLRVTGEECESKRRR  114
               K +A+K       + + +LE    L + +  L         E LR   EE ES ++ 
Sbjct  200  LKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQE  259

Query  115  MQALEENAAKLKNEISHLEEDMKRVRAARDKELRKGGKFQALENEVKSHSHELVRLTTQL  174
            ++  EE  A++  E    E++ K       +E       +  E           R     
Sbjct  260  IEKEEEKLAQVLKENKEEEKEKK------LQEEELKLLAKEEEELKSELLKLERRKVDDE  313

Query  175  DLKNASVSEEQEKRETVRKTVKDLEKVLKEKREVYDKLQAEYDAAKAELDAQTAEVEQKE  234
            +    S  E+++  + ++K  +++E++ KE +E+  K +AE +  +     Q    + +E
Sbjct  314  EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEE  373

Query  235  ELLQTLQTGVASKEGQESGYQGQLQDARNRASAAATEQEQAKLKIAHLEKRIKEDEPRAK  294
            ELL   +             + +L+        A    E A+     L++  KE+    +
Sbjct  374  ELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE  433

Query  295  KAKQQNSGLLDELEGLRAQAKRLEAELTRLGFEPGKEEAIYQEQSELQRDIRDLRERADG  354
            + ++       +L   + + ++ E +L +   E  K E + +E   ++   +     +  
Sbjct  434  EEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQ  493

Query  355  LKRKVANVDFTYADPHPNFDRSKVKGLVAQLFTLDKDKVQAATALEICAGGRLYNVVVDT  414
               + +  +                G+  ++ +          A+E         V+V+ 
Sbjct  494  KLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEV  553

Query  415  AETGTQLLQNGKLRKRVTIIPLNKISSFRASAEKIAAAQNIAPGKVDLALSLIGYDEEVT  474
            + T  ++ +  KL + +T +PL          +     ++IA  ++D  L+L   D+   
Sbjct  554  SATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATL  613

Query  475  AAMNYVFGNTLICEDADTAKRVTFDPAVRIKSVTLEGDVYDPSGTLSGGSSPNSSGVLVT  534
             A        ++       +      + + K   L   V    G         S   L  
Sbjct  614  EADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTK  673

Query  535  LQKLNEITREMRSKERRLAALEDTMRKEKKKLDTVRAVKQELDLKSHEIKLTEEQ  589
                 +  +E    E     +     + KKK    +   ++L L++ E+     Q
Sbjct  674  ELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQ  728


>CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Domain.  This 
family represents the hinge region of the SMC (Structural 
Maintenance of Chromosomes) family of proteins. The hinge region 
is responsible for formation of the DNA interacting dimer. 
It is also possible that the precise structure of it is 
an essential determinant of the specificity of the DNA-protein 
interaction.
Length=116

 Score = 90.4 bits (225),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 11/124 (9%)

Query  375  RSKVKGLVAQLFTLDKDKVQAATALEICAGGRLYNVVVDTAETGTQLLQNGKLRK--RVT  432
               V G +A L  +D+       A+E   GGRL  VVVD  +   + ++  K  K  R T
Sbjct  1    LKGVLGRLADLIEVDE---GYEKAVEAALGGRLQAVVVDDEDDAKRAIEFLKKNKLGRAT  57

Query  433  IIPLNKISSFRASAEKIAAAQNIAPGKVDLALSLIGYDEEVTAAMNYVFGNTLICEDADT  492
             +PL+++                  G     L L+ YD+E   A+ Y+ GNTL+ +D D 
Sbjct  58   FLPLDRLKPRPRRPGADLK------GGAGPLLDLVEYDDEYRKALRYLLGNTLVVDDLDE  111

Query  493  AKRV  496
            A  +
Sbjct  112  ALEL  115



Lambda      K        H        a         alpha
   0.310    0.128    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 765147136


Query= TCONS_00012089

Length=310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  69.5    1e-15
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  65.0    4e-14
CDD:395966 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferas...  67.1    1e-13


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 69.5 bits (171),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 35/104 (34%), Positives = 50/104 (48%), Gaps = 11/104 (11%)

Query  73   VLDNACGIGAVSSVLNHTLQDEAKKT-WKLTCGDLSEGMLETTKRRLQDEGWVNAETKIV  131
            VLD  CG G ++  L       A++   ++T  DLS  MLE  + R  + G +N E    
Sbjct  1    VLDLGCGTGRLTLAL-------ARRGGARVTGVDLSPEMLERARERAAEAG-LNVEFVQG  52

Query  132  NALDTGLPDGHYTHVFVAFGFQSFPDAN--AALKECFRILASGG  173
            +A D   PDG +  V  +      PD +  AAL+E  R+L  GG
Sbjct  53   DAEDLPFPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 65.0 bits (159),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 44/103 (43%), Gaps = 10/103 (10%)

Query  74   LDNACGIGAVSSVLNHTLQDEAKKTWKLTCGDLSEGMLETTKRRLQDEGWVNAETKIVNA  133
            LD  CG G ++ +L       A+   ++T  D+S  MLE  + +   EG         +A
Sbjct  1    LDVGCGTGLLTELL-------ARLGARVTGVDISPEMLELAREKAPREGLTFVVG---DA  50

Query  134  LDTGLPDGHYTHVFVAFGFQSFPDANAALKECFRILASGGILA  176
             D   PD  +  V  +       D   AL+E  R+L  GGIL 
Sbjct  51   EDLPFPDNSFDLVLSSEVLHHVEDPERALREIARVLKPGGILI  93


>CDD:395966 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family. 
 
Length=228

 Score = 67.1 bits (164),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/107 (32%), Positives = 54/107 (50%), Gaps = 4/107 (4%)

Query  69   KPLVVLDNACGIGAVSSVLNHTLQDEAKKTWKLTCGDLSEGMLETTKRRLQDEGWVNAET  128
            +    LD A G G  +      L D A  + K+   D++E ML+  +++ ++EG  N E 
Sbjct  42   RGNKFLDVAGGTGDWTF----GLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEF  97

Query  129  KIVNALDTGLPDGHYTHVFVAFGFQSFPDANAALKECFRILASGGIL  175
               NA +    D  +  V ++FG ++FPD    LKE FR+L  GG +
Sbjct  98   LQGNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRV  144



Lambda      K        H        a         alpha
   0.319    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 355153814


Query= TCONS_00012090

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  69.5    9e-16
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  65.0    3e-14
CDD:395966 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferas...  67.5    7e-14


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 69.5 bits (171),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 35/104 (34%), Positives = 50/104 (48%), Gaps = 11/104 (11%)

Query  50   VLDNACGIGAVSSVLNHTLQDEAKKT-WKLTCGDLSEGMLETTKRRLQDEGWVNAETKIV  108
            VLD  CG G ++  L       A++   ++T  DLS  MLE  + R  + G +N E    
Sbjct  1    VLDLGCGTGRLTLAL-------ARRGGARVTGVDLSPEMLERARERAAEAG-LNVEFVQG  52

Query  109  NALDTGLPDGHYTHVFVAFGFQSFPDAN--AALKECFRILASGG  150
            +A D   PDG +  V  +      PD +  AAL+E  R+L  GG
Sbjct  53   DAEDLPFPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 65.0 bits (159),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 44/103 (43%), Gaps = 10/103 (10%)

Query  51   LDNACGIGAVSSVLNHTLQDEAKKTWKLTCGDLSEGMLETTKRRLQDEGWVNAETKIVNA  110
            LD  CG G ++ +L       A+   ++T  D+S  MLE  + +   EG         +A
Sbjct  1    LDVGCGTGLLTELL-------ARLGARVTGVDISPEMLELAREKAPREGLTFVVG---DA  50

Query  111  LDTGLPDGHYTHVFVAFGFQSFPDANAALKECFRILASGGILA  153
             D   PD  +  V  +       D   AL+E  R+L  GGIL 
Sbjct  51   EDLPFPDNSFDLVLSSEVLHHVEDPERALREIARVLKPGGILI  93


>CDD:395966 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family. 
 
Length=228

 Score = 67.5 bits (165),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 34/107 (32%), Positives = 54/107 (50%), Gaps = 4/107 (4%)

Query  46   KPLVVLDNACGIGAVSSVLNHTLQDEAKKTWKLTCGDLSEGMLETTKRRLQDEGWVNAET  105
            +    LD A G G  +      L D A  + K+   D++E ML+  +++ ++EG  N E 
Sbjct  42   RGNKFLDVAGGTGDWTF----GLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEF  97

Query  106  KIVNALDTGLPDGHYTHVFVAFGFQSFPDANAALKECFRILASGGIL  152
               NA +    D  +  V ++FG ++FPD    LKE FR+L  GG +
Sbjct  98   LQGNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRV  144



Lambda      K        H        a         alpha
   0.318    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00012091

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  69.5    9e-16
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  65.0    3e-14
CDD:395966 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferas...  67.5    7e-14


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 69.5 bits (171),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 35/104 (34%), Positives = 50/104 (48%), Gaps = 11/104 (11%)

Query  50   VLDNACGIGAVSSVLNHTLQDEAKKT-WKLTCGDLSEGMLETTKRRLQDEGWVNAETKIV  108
            VLD  CG G ++  L       A++   ++T  DLS  MLE  + R  + G +N E    
Sbjct  1    VLDLGCGTGRLTLAL-------ARRGGARVTGVDLSPEMLERARERAAEAG-LNVEFVQG  52

Query  109  NALDTGLPDGHYTHVFVAFGFQSFPDAN--AALKECFRILASGG  150
            +A D   PDG +  V  +      PD +  AAL+E  R+L  GG
Sbjct  53   DAEDLPFPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 65.0 bits (159),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 44/103 (43%), Gaps = 10/103 (10%)

Query  51   LDNACGIGAVSSVLNHTLQDEAKKTWKLTCGDLSEGMLETTKRRLQDEGWVNAETKIVNA  110
            LD  CG G ++ +L       A+   ++T  D+S  MLE  + +   EG         +A
Sbjct  1    LDVGCGTGLLTELL-------ARLGARVTGVDISPEMLELAREKAPREGLTFVVG---DA  50

Query  111  LDTGLPDGHYTHVFVAFGFQSFPDANAALKECFRILASGGILA  153
             D   PD  +  V  +       D   AL+E  R+L  GGIL 
Sbjct  51   EDLPFPDNSFDLVLSSEVLHHVEDPERALREIARVLKPGGILI  93


>CDD:395966 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family. 
 
Length=228

 Score = 67.5 bits (165),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 34/107 (32%), Positives = 54/107 (50%), Gaps = 4/107 (4%)

Query  46   KPLVVLDNACGIGAVSSVLNHTLQDEAKKTWKLTCGDLSEGMLETTKRRLQDEGWVNAET  105
            +    LD A G G  +      L D A  + K+   D++E ML+  +++ ++EG  N E 
Sbjct  42   RGNKFLDVAGGTGDWTF----GLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEF  97

Query  106  KIVNALDTGLPDGHYTHVFVAFGFQSFPDANAALKECFRILASGGIL  152
               NA +    D  +  V ++FG ++FPD    LKE FR+L  GG +
Sbjct  98   LQGNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRV  144



Lambda      K        H        a         alpha
   0.318    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00018089

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  69.5    9e-16
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  65.0    3e-14
CDD:395966 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferas...  67.5    7e-14


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 69.5 bits (171),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 35/104 (34%), Positives = 50/104 (48%), Gaps = 11/104 (11%)

Query  50   VLDNACGIGAVSSVLNHTLQDEAKKT-WKLTCGDLSEGMLETTKRRLQDEGWVNAETKIV  108
            VLD  CG G ++  L       A++   ++T  DLS  MLE  + R  + G +N E    
Sbjct  1    VLDLGCGTGRLTLAL-------ARRGGARVTGVDLSPEMLERARERAAEAG-LNVEFVQG  52

Query  109  NALDTGLPDGHYTHVFVAFGFQSFPDAN--AALKECFRILASGG  150
            +A D   PDG +  V  +      PD +  AAL+E  R+L  GG
Sbjct  53   DAEDLPFPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 65.0 bits (159),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 44/103 (43%), Gaps = 10/103 (10%)

Query  51   LDNACGIGAVSSVLNHTLQDEAKKTWKLTCGDLSEGMLETTKRRLQDEGWVNAETKIVNA  110
            LD  CG G ++ +L       A+   ++T  D+S  MLE  + +   EG         +A
Sbjct  1    LDVGCGTGLLTELL-------ARLGARVTGVDISPEMLELAREKAPREGLTFVVG---DA  50

Query  111  LDTGLPDGHYTHVFVAFGFQSFPDANAALKECFRILASGGILA  153
             D   PD  +  V  +       D   AL+E  R+L  GGIL 
Sbjct  51   EDLPFPDNSFDLVLSSEVLHHVEDPERALREIARVLKPGGILI  93


>CDD:395966 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family. 
 
Length=228

 Score = 67.5 bits (165),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 34/107 (32%), Positives = 54/107 (50%), Gaps = 4/107 (4%)

Query  46   KPLVVLDNACGIGAVSSVLNHTLQDEAKKTWKLTCGDLSEGMLETTKRRLQDEGWVNAET  105
            +    LD A G G  +      L D A  + K+   D++E ML+  +++ ++EG  N E 
Sbjct  42   RGNKFLDVAGGTGDWTF----GLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEF  97

Query  106  KIVNALDTGLPDGHYTHVFVAFGFQSFPDANAALKECFRILASGGIL  152
               NA +    D  +  V ++FG ++FPD    LKE FR+L  GG +
Sbjct  98   LQGNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRV  144



Lambda      K        H        a         alpha
   0.318    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00018090

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  69.5    1e-15
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  65.0    4e-14
CDD:395966 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferas...  67.5    9e-14


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 69.5 bits (171),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 35/104 (34%), Positives = 50/104 (48%), Gaps = 11/104 (11%)

Query  69   VLDNACGIGAVSSVLNHTLQDEAKKT-WKLTCGDLSEGMLETTKRRLQDEGWVNAETKIV  127
            VLD  CG G ++  L       A++   ++T  DLS  MLE  + R  + G +N E    
Sbjct  1    VLDLGCGTGRLTLAL-------ARRGGARVTGVDLSPEMLERARERAAEAG-LNVEFVQG  52

Query  128  NALDTGLPDGHYTHVFVAFGFQSFPDAN--AALKECFRILASGG  169
            +A D   PDG +  V  +      PD +  AAL+E  R+L  GG
Sbjct  53   DAEDLPFPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 65.0 bits (159),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 44/103 (43%), Gaps = 10/103 (10%)

Query  70   LDNACGIGAVSSVLNHTLQDEAKKTWKLTCGDLSEGMLETTKRRLQDEGWVNAETKIVNA  129
            LD  CG G ++ +L       A+   ++T  D+S  MLE  + +   EG         +A
Sbjct  1    LDVGCGTGLLTELL-------ARLGARVTGVDISPEMLELAREKAPREGLTFVVG---DA  50

Query  130  LDTGLPDGHYTHVFVAFGFQSFPDANAALKECFRILASGGILA  172
             D   PD  +  V  +       D   AL+E  R+L  GGIL 
Sbjct  51   EDLPFPDNSFDLVLSSEVLHHVEDPERALREIARVLKPGGILI  93


>CDD:395966 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family. 
 
Length=228

 Score = 67.5 bits (165),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 34/107 (32%), Positives = 54/107 (50%), Gaps = 4/107 (4%)

Query  65   KPLVVLDNACGIGAVSSVLNHTLQDEAKKTWKLTCGDLSEGMLETTKRRLQDEGWVNAET  124
            +    LD A G G  +      L D A  + K+   D++E ML+  +++ ++EG  N E 
Sbjct  42   RGNKFLDVAGGTGDWTF----GLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEF  97

Query  125  KIVNALDTGLPDGHYTHVFVAFGFQSFPDANAALKECFRILASGGIL  171
               NA +    D  +  V ++FG ++FPD    LKE FR+L  GG +
Sbjct  98   LQGNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRV  144



Lambda      K        H        a         alpha
   0.319    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00012092

Length=266


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00018091

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00018092

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00012093

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369158 pfam06984, MRP-L47, Mitochondrial 39-S ribosomal prote...  77.9    1e-19


>CDD:369158 pfam06984, MRP-L47, Mitochondrial 39-S ribosomal protein L47 
(MRP-L47).  This family represents the N-terminal region (approximately 
8 residues) of the eukaryotic mitochondrial 39-S 
ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins 
(MRPs) are the counterparts of the cytoplasmic ribosomal 
proteins, in that they fulfil similar functions in protein 
biosynthesis. However, they are distinct in number, features 
and primary structure.
Length=86

 Score = 77.9 bits (192),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 6/92 (7%)

Query  102  LWGFFPRDRSALSTPEYDIAHGRSWSIQELREKSWEDLHCLWWVCVKERNRIATSNLERQ  161
            L  FF   ++    PE ++  GR+W  +ELR KS+ DLH LW+VC+KE+N + T     Q
Sbjct  1    LEEFFDDKKNW---PEEEVKVGRAWPAEELRHKSFNDLHKLWYVCLKEKNMLLT---MEQ  54

Query  162  RLKAGYGEWEARERDRTIRITQNGIKHVLRER  193
             L        + ER   ++I+   IK VLRER
Sbjct  55   ELLRNQEVMPSPERLDKVKISMENIKTVLRER  86



Lambda      K        H        a         alpha
   0.321    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00012095

Length=179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369158 pfam06984, MRP-L47, Mitochondrial 39-S ribosomal prote...  62.5    5e-14


>CDD:369158 pfam06984, MRP-L47, Mitochondrial 39-S ribosomal protein L47 
(MRP-L47).  This family represents the N-terminal region (approximately 
8 residues) of the eukaryotic mitochondrial 39-S 
ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins 
(MRPs) are the counterparts of the cytoplasmic ribosomal 
proteins, in that they fulfil similar functions in protein 
biosynthesis. However, they are distinct in number, features 
and primary structure.
Length=86

 Score = 62.5 bits (152),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 28/74 (38%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query  102  LWGFFPRDRSALSTPEYDIAHGRSWSIQELREKSWEDLHCLWWVCVKERNRIATSNLERQ  161
            L  FF   ++    PE ++  GR+W  +ELR KS+ DLH LW+VC+KE+N + T     Q
Sbjct  1    LEEFFDDKKNW---PEEEVKVGRAWPAEELRHKSFNDLHKLWYVCLKEKNMLLT---MEQ  54

Query  162  RLKAGYGEWEARER  175
             L        + ER
Sbjct  55   ELLRNQEVMPSPER  68



Lambda      K        H        a         alpha
   0.320    0.134    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00012094

Length=217
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369158 pfam06984, MRP-L47, Mitochondrial 39-S ribosomal prote...  77.1    3e-19


>CDD:369158 pfam06984, MRP-L47, Mitochondrial 39-S ribosomal protein L47 
(MRP-L47).  This family represents the N-terminal region (approximately 
8 residues) of the eukaryotic mitochondrial 39-S 
ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins 
(MRPs) are the counterparts of the cytoplasmic ribosomal 
proteins, in that they fulfil similar functions in protein 
biosynthesis. However, they are distinct in number, features 
and primary structure.
Length=86

 Score = 77.1 bits (190),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 6/92 (7%)

Query  102  LWGFFPRDRSALSTPEYDIAHGRSWSIQELREKSWEDLHCLWWVCVKERNRIATSNLERQ  161
            L  FF   ++    PE ++  GR+W  +ELR KS+ DLH LW+VC+KE+N + T     Q
Sbjct  1    LEEFFDDKKNW---PEEEVKVGRAWPAEELRHKSFNDLHKLWYVCLKEKNMLLT---MEQ  54

Query  162  RLKAGYGEWEARERDRTIRITQNGIKHVLRER  193
             L        + ER   ++I+   IK VLRER
Sbjct  55   ELLRNQEVMPSPERLDKVKISMENIKTVLRER  86



Lambda      K        H        a         alpha
   0.319    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00012098

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00018093

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00018094

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00012096

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00018095

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369158 pfam06984, MRP-L47, Mitochondrial 39-S ribosomal prote...  78.2    1e-19


>CDD:369158 pfam06984, MRP-L47, Mitochondrial 39-S ribosomal protein L47 
(MRP-L47).  This family represents the N-terminal region (approximately 
8 residues) of the eukaryotic mitochondrial 39-S 
ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins 
(MRPs) are the counterparts of the cytoplasmic ribosomal 
proteins, in that they fulfil similar functions in protein 
biosynthesis. However, they are distinct in number, features 
and primary structure.
Length=86

 Score = 78.2 bits (193),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 6/92 (7%)

Query  102  LWGFFPRDRSALSTPEYDIAHGRSWSIQELREKSWEDLHCLWWVCVKERNRIATSNLERQ  161
            L  FF   ++    PE ++  GR+W  +ELR KS+ DLH LW+VC+KE+N + T     Q
Sbjct  1    LEEFFDDKKNW---PEEEVKVGRAWPAEELRHKSFNDLHKLWYVCLKEKNMLLT---MEQ  54

Query  162  RLKAGYGEWEARERDRTVRITQNGIKHVLRER  193
             L        + ER   V+I+   IK VLRER
Sbjct  55   ELLRNQEVMPSPERLDKVKISMENIKTVLRER  86



Lambda      K        H        a         alpha
   0.319    0.134    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00012097

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0629    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00012099

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395792 pfam00996, GDI, GDP dissociation inhibitor                 284     3e-96


>CDD:395792 pfam00996, GDI, GDP dissociation inhibitor.  
Length=436

 Score = 284 bits (728),  Expect = 3e-96, Method: Composition-based stats.
 Identities = 117/191 (61%), Positives = 147/191 (77%), Gaps = 12/191 (6%)

Query  1    MEEIAPEYDVVVLGTGLTECVLSGVLSVKGNKVLHIDRNDHYGGEAASVNIETLFKKYGN  60
            M+E   EYDV+VLGTGL EC+LSG+LSV G KVLHIDRND+YGGE+AS+N+  L++++  
Sbjct  1    MDE---EYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASLNLTQLYERF--  55

Query  61   VRPGEEPWKKYGRVNDWNIDLVPKLLMANGELTNILVSTDVTRYLEFKQIAGSYV-QQGK  119
             RPGE+P +K GR  DWN+DL+PK LMANG L  IL+ TDVTRYLEFK + GSYV ++GK
Sbjct  56   -RPGEKPPEKLGRDRDWNVDLIPKFLMANGNLVKILIHTDVTRYLEFKVVEGSYVYKKGK  114

Query  120  GPKATVAKVPSDAGEALRSSLMGMFEKRRAKKFLEWVGEFKEDDPATHQGLNVAQCTMKE  179
                 + KVP++  EAL S LMG+FEKRRA+KFLE+V  + EDDP TH+GL+  + TM E
Sbjct  115  -----IHKVPANDMEALSSPLMGLFEKRRARKFLEYVQNYDEDDPKTHKGLDPDKLTMLE  169

Query  180  VYDKFGLEDNT  190
            VY KFGL  NT
Sbjct  170  VYKKFGLGQNT  180



Lambda      K        H        a         alpha
   0.315    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00018096

Length=155
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395792 pfam00996, GDI, GDP dissociation inhibitor                 236     3e-78


>CDD:395792 pfam00996, GDI, GDP dissociation inhibitor.  
Length=436

 Score = 236 bits (604),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 97/156 (62%), Positives = 123/156 (79%), Gaps = 12/156 (8%)

Query  1    MEEIAPEYDVVVLGTGLTECVLSGVLSVKGNKVLHIDRNDHYGGEAASVNIETLFKKYGN  60
            M+E   EYDV+VLGTGL EC+LSG+LSV G KVLHIDRND+YGGE+AS+N+  L++++  
Sbjct  1    MDE---EYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASLNLTQLYERF--  55

Query  61   VRPGEEPWKKYGRVNDWNIDLVPKLLMANGELTNILVSTDVTRYLEFKQIAGSYV-QQGK  119
             RPGE+P +K GR  DWN+DL+PK LMANG L  IL+ TDVTRYLEFK + GSYV ++GK
Sbjct  56   -RPGEKPPEKLGRDRDWNVDLIPKFLMANGNLVKILIHTDVTRYLEFKVVEGSYVYKKGK  114

Query  120  GPKATVAKVPSDAGEALRSSLMGMFEKRRAKKFLEW  155
                 + KVP++  EAL S LMG+FEKRRA+KFLE+
Sbjct  115  -----IHKVPANDMEALSSPLMGLFEKRRARKFLEY  145



Lambda      K        H        a         alpha
   0.315    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00012101

Length=553


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00018098

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395792 pfam00996, GDI, GDP dissociation inhibitor                 644     0.0  


>CDD:395792 pfam00996, GDI, GDP dissociation inhibitor.  
Length=436

 Score = 644 bits (1662),  Expect = 0.0, Method: Composition-based stats.
 Identities = 273/440 (62%), Positives = 336/440 (76%), Gaps = 27/440 (6%)

Query  1    MEEIAPEYDVVVLGTGLTECVLSGVLSVKGNKVLHIDRNDHYGGEAASVNIETLFKKYGN  60
            M+E   EYDV+VLGTGL EC+LSG+LSV G KVLHIDRND+YGGE+AS+N+  L++++  
Sbjct  1    MDE---EYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASLNLTQLYERF--  55

Query  61   VRPGEEPWKKYGRVNDWNIDLVPKLLMANGELTNILVSTDVTRYLEFKQIAGSYV-QQGK  119
             RPGE+P +K GR  DWN+DL+PK LMANG L  IL+ TDVTRYLEFK + GSYV ++GK
Sbjct  56   -RPGEKPPEKLGRDRDWNVDLIPKFLMANGNLVKILIHTDVTRYLEFKVVEGSYVYKKGK  114

Query  120  GPKATVAKVPSDAGEALRSSLMGMFEKRRAKKFLEWVGEFKEDDPATHQGLNVAQCTMKE  179
                 + KVP++  EAL S LMG+FEKRRA+KFLE+V  + EDDP TH+GL+  + TM E
Sbjct  115  -----IHKVPANDMEALSSPLMGLFEKRRARKFLEYVQNYDEDDPKTHKGLDPDKLTMLE  169

Query  180  VYDKFGLEDNTRDFVGHSMALYPSDDYITTPGMAVETIHRIRLYVNSMARYGKSPYIYPL  239
            VY KFGL  NT DF+GH++ALY  DDY+  P  A+ET+ RI+LY  S+ARYGKSPY+YPL
Sbjct  170  VYKKFGLGQNTIDFIGHALALYRDDDYLKQP--ALETVERIKLYAESLARYGKSPYLYPL  227

Query  240  YGLGELPQGFARLSAIYGGTYMLNTSVDEVLYDESGKVSGIKATMKDRDDNSEAMKFTTK  299
            YGLGELPQGFARLSAIYGGTYMLN  VDEV+YDE GKV G+K+  +             K
Sbjct  228  YGLGELPQGFARLSAIYGGTYMLNKPVDEVVYDEDGKVVGVKSGGE-----------VAK  276

Query  300  TKKIIADPSYFPGKVRVTGYLLKAICILNHPIEKTDGSDSLQLIIPQSQVGRKHDVYIAM  359
             K++I DPSYFP KVR  G +++AICIL+HPI  TD ++S+Q+IIPQ+Q+GRK D+Y+A+
Sbjct  277  CKQVICDPSYFPEKVRKVGRVIRAICILSHPIPNTDDANSVQIIIPQNQLGRKSDIYVAL  336

Query  360  VSSAHNVCPKGYYIAIVSTIAETDANHHLELEPGFERLGQIEEKFFGPPIPLYEPLDSGE  419
            VS AHNV  KG YIAIVST  ETD N   E+EPG E LG I+EKF      LYEP++ G 
Sbjct  337  VSYAHNVAAKGKYIAIVSTTVETD-NPEKEIEPGLELLGPIDEKFVKIS-DLYEPVEDGS  394

Query  420  KDNIFISKSYDATSHFETTT  439
            KDNIFISKSYDAT+HFETTT
Sbjct  395  KDNIFISKSYDATTHFETTT  414



Lambda      K        H        a         alpha
   0.317    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 570537888


Query= TCONS_00018097

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395792 pfam00996, GDI, GDP dissociation inhibitor                 537     0.0  


>CDD:395792 pfam00996, GDI, GDP dissociation inhibitor.  
Length=436

 Score = 537 bits (1384),  Expect = 0.0, Method: Composition-based stats.
 Identities = 228/376 (61%), Positives = 281/376 (75%), Gaps = 21/376 (6%)

Query  1    MANGELTNILVSTDVTRYLEFKQIAGSYV-QQGKGPKATVAKVPSDAGEALRSSLMGMFE  59
            MANG L  IL+ TDVTRYLEFK + GSYV ++GK     + KVP++  EAL S LMG+FE
Sbjct  81   MANGNLVKILIHTDVTRYLEFKVVEGSYVYKKGK-----IHKVPANDMEALSSPLMGLFE  135

Query  60   KRRAKKFLEWVGEFKEDDPATHQGLNVAQCTMKEVYDKFGLEDNTRDFVGHSMALYPSDD  119
            KRRA+KFLE+V  + EDDP TH+GL+  + TM EVY KFGL  NT DF+GH++ALY  DD
Sbjct  136  KRRARKFLEYVQNYDEDDPKTHKGLDPDKLTMLEVYKKFGLGQNTIDFIGHALALYRDDD  195

Query  120  YITTPGMAVETIHRIRLYVNSMARYGKSPYIYPLYGLGELPQGFARLSAIYGGTYMLNTS  179
            Y+  P  A+ET+ RI+LY  S+ARYGKSPY+YPLYGLGELPQGFARLSAIYGGTYMLN  
Sbjct  196  YLKQP--ALETVERIKLYAESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKP  253

Query  180  VDEVLYDESGKVSGIKATMKDRDDNSEAMKFTTKTKKIIADPSYFPGKVRVTGYLLKAIC  239
            VDEV+YDE GKV G+K+  +             K K++I DPSYFP KVR  G +++AIC
Sbjct  254  VDEVVYDEDGKVVGVKSGGE-----------VAKCKQVICDPSYFPEKVRKVGRVIRAIC  302

Query  240  ILNHPIEKTDGSDSLQLIIPQSQVGRKHDVYIAMVSSAHNVCPKGYYIAIVSTIAETDAN  299
            IL+HPI  TD ++S+Q+IIPQ+Q+GRK D+Y+A+VS AHNV  KG YIAIVST  ETD N
Sbjct  303  ILSHPIPNTDDANSVQIIIPQNQLGRKSDIYVALVSYAHNVAAKGKYIAIVSTTVETD-N  361

Query  300  HHLELEPGFERLGQIEEKFFGPPIPLYEPLDSGEKDNIFISKSYDATSHFETTTDDVRDL  359
               E+EPG E LG I+EKF      LYEP++ G KDNIFISKSYDAT+HFETTT+DV D+
Sbjct  362  PEKEIEPGLELLGPIDEKFVKIS-DLYEPVEDGSKDNIFISKSYDATTHFETTTNDVLDI  420

Query  360  YKRATGEELVVEGLRE  375
            YKR TG++L ++    
Sbjct  421  YKRITGQDLDLKQRNT  436



Lambda      K        H        a         alpha
   0.316    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00012102

Length=451
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395792 pfam00996, GDI, GDP dissociation inhibitor                 651     0.0  


>CDD:395792 pfam00996, GDI, GDP dissociation inhibitor.  
Length=436

 Score = 651 bits (1681),  Expect = 0.0, Method: Composition-based stats.
 Identities = 279/452 (62%), Positives = 343/452 (76%), Gaps = 27/452 (6%)

Query  1    MEEIAPEYDVVVLGTGLTECVLSGVLSVKGNKVLHIDRNDHYGGEAASVNIETLFKKYGN  60
            M+E   EYDV+VLGTGL EC+LSG+LSV G KVLHIDRND+YGGE+AS+N+  L++++  
Sbjct  1    MDE---EYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASLNLTQLYERF--  55

Query  61   VRPGEEPWKKYGRVNDWNIDLVPKLLMANGELTNILVSTDVTRYLEFKQIAGSYV-QQGK  119
             RPGE+P +K GR  DWN+DL+PK LMANG L  IL+ TDVTRYLEFK + GSYV ++GK
Sbjct  56   -RPGEKPPEKLGRDRDWNVDLIPKFLMANGNLVKILIHTDVTRYLEFKVVEGSYVYKKGK  114

Query  120  GPKATVAKVPSDAGEALRSSLMGMFEKRRAKKFLEWVGEFKEDDPATHQGLNVAQCTMKE  179
                 + KVP++  EAL S LMG+FEKRRA+KFLE+V  + EDDP TH+GL+  + TM E
Sbjct  115  -----IHKVPANDMEALSSPLMGLFEKRRARKFLEYVQNYDEDDPKTHKGLDPDKLTMLE  169

Query  180  VYDKFGLEDNTRDFVGHSMALYPSDDYITTPGMAVETIHRIRLYVNSMARYGKSPYIYPL  239
            VY KFGL  NT DF+GH++ALY  DDY+  P  A+ET+ RI+LY  S+ARYGKSPY+YPL
Sbjct  170  VYKKFGLGQNTIDFIGHALALYRDDDYLKQP--ALETVERIKLYAESLARYGKSPYLYPL  227

Query  240  YGLGELPQGFARLSAIYGGTYMLNTSVDEVLYDESGKVSGIKATMKDRDDNSEAMKFTTK  299
            YGLGELPQGFARLSAIYGGTYMLN  VDEV+YDE GKV G+K+  +             K
Sbjct  228  YGLGELPQGFARLSAIYGGTYMLNKPVDEVVYDEDGKVVGVKSGGE-----------VAK  276

Query  300  TKKIIADPSYFPGKVRVTGYLLKAICILNHPIEKTDGSDSLQLIIPQSQVGRKHDVYIAM  359
             K++I DPSYFP KVR  G +++AICIL+HPI  TD ++S+Q+IIPQ+Q+GRK D+Y+A+
Sbjct  277  CKQVICDPSYFPEKVRKVGRVIRAICILSHPIPNTDDANSVQIIIPQNQLGRKSDIYVAL  336

Query  360  VSSAHNVCPKGYYIAIVSTIAETDANHHLELEPGFERLGQIEEKFFGPPIPLYEPLDSGE  419
            VS AHNV  KG YIAIVST  ETD N   E+EPG E LG I+EKF      LYEP++ G 
Sbjct  337  VSYAHNVAAKGKYIAIVSTTVETD-NPEKEIEPGLELLGPIDEKFVKIS-DLYEPVEDGS  394

Query  420  KDNIFISKSYDATSHFETTTGMSRDLYKRATG  451
            KDNIFISKSYDAT+HFETTT    D+YKR TG
Sbjct  395  KDNIFISKSYDATTHFETTTNDVLDIYKRITG  426



Lambda      K        H        a         alpha
   0.316    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 553667144


Query= TCONS_00012100

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395792 pfam00996, GDI, GDP dissociation inhibitor                 654     0.0  


>CDD:395792 pfam00996, GDI, GDP dissociation inhibitor.  
Length=436

 Score = 654 bits (1689),  Expect = 0.0, Method: Composition-based stats.
 Identities = 282/479 (59%), Positives = 350/479 (73%), Gaps = 44/479 (9%)

Query  1    MEEIAPEYDVVVLGTGLTECVLSGVLSVKGNKVLHIDRNDHYGGEAASVNIETLFKKYGN  60
            M+E   EYDV+VLGTGL EC+LSG+LSV G KVLHIDRND+YGGE+AS+N+  L++++  
Sbjct  1    MDE---EYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASLNLTQLYERF--  55

Query  61   VRPGEEPWKKYGRVNDWNIDLVPKLLMANGELTNILVSTDVTRYLEFKQIAGSYV-QQGK  119
             RPGE+P +K GR  DWN+DL+PK LMANG L  IL+ TDVTRYLEFK + GSYV ++GK
Sbjct  56   -RPGEKPPEKLGRDRDWNVDLIPKFLMANGNLVKILIHTDVTRYLEFKVVEGSYVYKKGK  114

Query  120  GPKATVAKVPSDAGEALRSSLMGMFEKRRAKKFLEWVGEFKEDDPATHQGLSLHCSIYSI  179
                 + KVP++  EAL S LMG+FEKRRA+KFLE+V  + EDDP TH+GL         
Sbjct  115  -----IHKVPANDMEALSSPLMGLFEKRRARKFLEYVQNYDEDDPKTHKGLDPD------  163

Query  180  ANVKGSGLNVAQCTMKEVYDKFGLEDNTRDFVGHSMALYPSDDYITTPGMAVETIHRIRL  239
                       + TM EVY KFGL  NT DF+GH++ALY  DDY+  P  A+ET+ RI+L
Sbjct  164  -----------KLTMLEVYKKFGLGQNTIDFIGHALALYRDDDYLKQP--ALETVERIKL  210

Query  240  YVNSMARYGKSPYIYPLYGLGELPQGFARLSAIYGGTYMLNTSVDEVLYDESGKVSGIKA  299
            Y  S+ARYGKSPY+YPLYGLGELPQGFARLSAIYGGTYMLN  VDEV+YDE GKV G+K+
Sbjct  211  YAESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDEVVYDEDGKVVGVKS  270

Query  300  TMKDRDDNSEAMKFTTKTKKIIADPSYFPGKVRVTGYLLKAICILNHPIEKTDGSDSLQL  359
              +             K K++I DPSYFP KVR  G +++AICIL+HPI  TD ++S+Q+
Sbjct  271  GGE-----------VAKCKQVICDPSYFPEKVRKVGRVIRAICILSHPIPNTDDANSVQI  319

Query  360  IIPQSQVGRKHDVYIAMVSSAHNVCPKGYYIAIVSTIAETDANHHLELEPGFERLGQIEE  419
            IIPQ+Q+GRK D+Y+A+VS AHNV  KG YIAIVST  ETD N   E+EPG E LG I+E
Sbjct  320  IIPQNQLGRKSDIYVALVSYAHNVAAKGKYIAIVSTTVETD-NPEKEIEPGLELLGPIDE  378

Query  420  KFFGPPIPLYEPLDSGEKDNIFISKSYDATSHFETTTDDVRDLYKRATGEELVVEGLRE  478
            KF      LYEP++ G KDNIFISKSYDAT+HFETTT+DV D+YKR TG++L ++    
Sbjct  379  KFVKIS-DLYEPVEDGSKDNIFISKSYDATTHFETTTNDVLDIYKRITGQDLDLKQRNT  436



Lambda      K        H        a         alpha
   0.316    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00018101

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395792 pfam00996, GDI, GDP dissociation inhibitor                 537     0.0  


>CDD:395792 pfam00996, GDI, GDP dissociation inhibitor.  
Length=436

 Score = 537 bits (1384),  Expect = 0.0, Method: Composition-based stats.
 Identities = 228/376 (61%), Positives = 281/376 (75%), Gaps = 21/376 (6%)

Query  1    MANGELTNILVSTDVTRYLEFKQIAGSYV-QQGKGPKATVAKVPSDAGEALRSSLMGMFE  59
            MANG L  IL+ TDVTRYLEFK + GSYV ++GK     + KVP++  EAL S LMG+FE
Sbjct  81   MANGNLVKILIHTDVTRYLEFKVVEGSYVYKKGK-----IHKVPANDMEALSSPLMGLFE  135

Query  60   KRRAKKFLEWVGEFKEDDPATHQGLNVAQCTMKEVYDKFGLEDNTRDFVGHSMALYPSDD  119
            KRRA+KFLE+V  + EDDP TH+GL+  + TM EVY KFGL  NT DF+GH++ALY  DD
Sbjct  136  KRRARKFLEYVQNYDEDDPKTHKGLDPDKLTMLEVYKKFGLGQNTIDFIGHALALYRDDD  195

Query  120  YITTPGMAVETIHRIRLYVNSMARYGKSPYIYPLYGLGELPQGFARLSAIYGGTYMLNTS  179
            Y+  P  A+ET+ RI+LY  S+ARYGKSPY+YPLYGLGELPQGFARLSAIYGGTYMLN  
Sbjct  196  YLKQP--ALETVERIKLYAESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKP  253

Query  180  VDEVLYDESGKVSGIKATMKDRDDNSEAMKFTTKTKKIIADPSYFPGKVRVTGYLLKAIC  239
            VDEV+YDE GKV G+K+  +             K K++I DPSYFP KVR  G +++AIC
Sbjct  254  VDEVVYDEDGKVVGVKSGGE-----------VAKCKQVICDPSYFPEKVRKVGRVIRAIC  302

Query  240  ILNHPIEKTDGSDSLQLIIPQSQVGRKHDVYIAMVSSAHNVCPKGYYIAIVSTIAETDAN  299
            IL+HPI  TD ++S+Q+IIPQ+Q+GRK D+Y+A+VS AHNV  KG YIAIVST  ETD N
Sbjct  303  ILSHPIPNTDDANSVQIIIPQNQLGRKSDIYVALVSYAHNVAAKGKYIAIVSTTVETD-N  361

Query  300  HHLELEPGFERLGQIEEKFFGPPIPLYEPLDSGEKDNIFISKSYDATSHFETTTDDVRDL  359
               E+EPG E LG I+EKF      LYEP++ G KDNIFISKSYDAT+HFETTT+DV D+
Sbjct  362  PEKEIEPGLELLGPIDEKFVKIS-DLYEPVEDGSKDNIFISKSYDATTHFETTTNDVLDI  420

Query  360  YKRATGEELVVEGLRE  375
            YKR TG++L ++    
Sbjct  421  YKRITGQDLDLKQRNT  436



Lambda      K        H        a         alpha
   0.316    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00012103

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395792 pfam00996, GDI, GDP dissociation inhibitor                 642     0.0  


>CDD:395792 pfam00996, GDI, GDP dissociation inhibitor.  
Length=436

 Score = 642 bits (1658),  Expect = 0.0, Method: Composition-based stats.
 Identities = 274/442 (62%), Positives = 337/442 (76%), Gaps = 27/442 (6%)

Query  1    MEEIAPEYDVVVLGTGLTECVLSGVLSVKGNKVLHIDRNDHYGGEAASVNIETLFKKYGN  60
            M+E   EYDV+VLGTGL EC+LSG+LSV G KVLHIDRND+YGGE+AS+N+  L++++  
Sbjct  1    MDE---EYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASLNLTQLYERF--  55

Query  61   VRPGEEPWKKYGRVNDWNIDLVPKLLMANGELTNILVSTDVTRYLEFKQIAGSYV-QQGK  119
             RPGE+P +K GR  DWN+DL+PK LMANG L  IL+ TDVTRYLEFK + GSYV ++GK
Sbjct  56   -RPGEKPPEKLGRDRDWNVDLIPKFLMANGNLVKILIHTDVTRYLEFKVVEGSYVYKKGK  114

Query  120  GPKATVAKVPSDAGEALRSSLMGMFEKRRAKKFLEWVGEFKEDDPATHQGLNVAQCTMKE  179
                 + KVP++  EAL S LMG+FEKRRA+KFLE+V  + EDDP TH+GL+  + TM E
Sbjct  115  -----IHKVPANDMEALSSPLMGLFEKRRARKFLEYVQNYDEDDPKTHKGLDPDKLTMLE  169

Query  180  VYDKFGLEDNTRDFVGHSMALYPSDDYITTPGMAVETIHRIRLYVNSMARYGKSPYIYPL  239
            VY KFGL  NT DF+GH++ALY  DDY+  P  A+ET+ RI+LY  S+ARYGKSPY+YPL
Sbjct  170  VYKKFGLGQNTIDFIGHALALYRDDDYLKQP--ALETVERIKLYAESLARYGKSPYLYPL  227

Query  240  YGLGELPQGFARLSAIYGGTYMLNTSVDEVLYDESGKVSGIKATMKDRDDNSEAMKFTTK  299
            YGLGELPQGFARLSAIYGGTYMLN  VDEV+YDE GKV G+K+  +             K
Sbjct  228  YGLGELPQGFARLSAIYGGTYMLNKPVDEVVYDEDGKVVGVKSGGE-----------VAK  276

Query  300  TKKIIADPSYFPGKVRVTGYLLKAICILNHPIEKTDGSDSLQLIIPQSQVGRKHDVYIAM  359
             K++I DPSYFP KVR  G +++AICIL+HPI  TD ++S+Q+IIPQ+Q+GRK D+Y+A+
Sbjct  277  CKQVICDPSYFPEKVRKVGRVIRAICILSHPIPNTDDANSVQIIIPQNQLGRKSDIYVAL  336

Query  360  VSSAHNVCPKGYYIAIVSTIAETDANHHLELEPGFERLGQIEEKFFGPPIPLYEPLDSGE  419
            VS AHNV  KG YIAIVST  ETD N   E+EPG E LG I+EKF      LYEP++ G 
Sbjct  337  VSYAHNVAAKGKYIAIVSTTVETD-NPEKEIEPGLELLGPIDEKFVKIS-DLYEPVEDGS  394

Query  420  KDNIFISKSYDATSHFETTTGD  441
            KDNIFISKSYDAT+HFETTT D
Sbjct  395  KDNIFISKSYDATTHFETTTND  416



Lambda      K        H        a         alpha
   0.316    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00012104

Length=704
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464223 pfam14629, ORC4_C, Origin recognition complex (ORC) su...  147     6e-41


>CDD:464223 pfam14629, ORC4_C, Origin recognition complex (ORC) subunit 4 
C-terminus.  This entry represents the C-terminus of origin 
recognition complex subunit 4.
Length=212

 Score = 147 bits (372),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 64/248 (26%), Positives = 102/248 (41%), Gaps = 56/248 (23%)

Query  463  EICFAALNLEDDEKQCFFDEVAPGKGNTLLEGWRTYLQALWADESFNHHLQRIYHQTKSV  522
            EIC + L+L  DE     D+         LE W   ++ L  D +    L+R+Y+ TKSV
Sbjct  1    EICKSLLSLPSDESSSEGDK-------KFLEQWNASIEELLEDSTVQDILKRLYYTTKSV  53

Query  523  KEFFASALLAMTELHYSTYDSSFEIPTPKTFSNQALSCPDPAPLPFSTSTT-------IS  575
            +    S +L +++L          + T ++  +   S    + L    S +       I+
Sbjct  54   RSLLNSLILPVSKL-----SPDSPLLTAESLLSALSSQSPDSKLSLLRSLSVLELCLLIA  108

Query  576  ASPSSLPLSLLLAATRLTALYDPGVEAGQPQNLAPLALSFPAAYAEYVRLLTSAKT---S  632
            A              RL+ +YD                +F   Y EY +L   +K    S
Sbjct  109  A-------------ARLSEIYDTD------------TFNFEMVYDEYKKLAKRSKVSPSS  143

Query  633  ASVSGATVTPGRVWGRDVAREAWEKLVSWGLINPVGGGS---------GTADGRMFRVEV  683
            A+   +  +  RVWGR VA +AWE L+S  L+ PVG  S         G  + RM R+++
Sbjct  144  ATSQSSAASGIRVWGRPVALKAWEHLLSLELLVPVGAVSTGGASSGSGGGKEFRMVRLDI  203

Query  684  SFEEVVAM  691
            + EE+   
Sbjct  204  TLEEIREA  211



Lambda      K        H        a         alpha
   0.313    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 901096690


Query= TCONS_00012105

Length=553


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00012107

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464223 pfam14629, ORC4_C, Origin recognition complex (ORC) su...  133     2e-38


>CDD:464223 pfam14629, ORC4_C, Origin recognition complex (ORC) subunit 4 
C-terminus.  This entry represents the C-terminus of origin 
recognition complex subunit 4.
Length=212

 Score = 133 bits (337),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 62/239 (26%), Positives = 97/239 (41%), Gaps = 56/239 (23%)

Query  28   EICFAALNLEDDEKQCFFDEVAPGKGNTLLEGWRTYLQALWADESFNHHLQRIYHQTKSV  87
            EIC + L+L  DE     D+         LE W   ++ L  D +    L+R+Y+ TKSV
Sbjct  1    EICKSLLSLPSDESSSEGDK-------KFLEQWNASIEELLEDSTVQDILKRLYYTTKSV  53

Query  88   KEFFASALLAMTELHYSTYDSSFEIPTPKTFSNQALSCPDPAPLPFSTSTT-------IS  140
            +    S +L +++L          + T ++  +   S    + L    S +       I+
Sbjct  54   RSLLNSLILPVSKL-----SPDSPLLTAESLLSALSSQSPDSKLSLLRSLSVLELCLLIA  108

Query  141  ASPSSLPLSLLLAATRLTALYDPGVEAGQPQNLAPLALSFPAAYAEYVRLLTSAKT---S  197
            A              RL+ +YD                +F   Y EY +L   +K    S
Sbjct  109  A-------------ARLSEIYDTD------------TFNFEMVYDEYKKLAKRSKVSPSS  143

Query  198  ASVSGATVTPGRVWGRDVAREAWEKLVSWGLINPVGGGS---------GTADGRMFRVE  247
            A+   +  +  RVWGR VA +AWE L+S  L+ PVG  S         G  + RM R++
Sbjct  144  ATSQSSAASGIRVWGRPVALKAWEHLLSLELLVPVGAVSTGGASSGSGGGKEFRMVRLD  202



Lambda      K        H        a         alpha
   0.316    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00012108

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.146    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00012110

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, a...  74.2    5e-17
CDD:459870 pfam00615, RGS, Regulator of G protein signaling domai...  60.7    7e-12


>CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin 
(DEP).  The DEP domain is responsible for mediating intracellular 
protein targeting and regulation of protein stability 
in the cell. The DEP domain is present in a number of 
signaling molecules, including Regulator of G protein Signaling 
(RGS) proteins, and has been implicated in membrane targeting. 
New findings in yeast, however, demonstrate a major 
role for a DEP domain in mediating the interaction of an RGS 
protein to the C-terminal tail of a GPCR, thus placing RGS 
in close proximity with its substrate G protein alpha subunit.
Length=71

 Score = 74.2 bits (183),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 31/80 (39%), Positives = 38/80 (48%), Gaps = 11/80 (14%)

Query  423  GVKMAKERKINDKIYMNTFTGKAAVDWLMDCSTTIERRETVLIAELFVKYGLITMLQEDK  482
            GVK+   RK   K Y N FTG  AVDWLMD    I R E V + +L +  GLI  + +  
Sbjct  1    GVKLKDRRKHL-KTYPNCFTGSEAVDWLMDNLEIITREEAVELGQLLLDQGLIHHVGDKH  59

Query  483  GYPQPDASIVVFQPSKYAIY  502
            G          F+ S Y  Y
Sbjct  60   GL---------FKDS-YYFY  69


>CDD:459870 pfam00615, RGS, Regulator of G protein signaling domain.  RGS 
family members are GTPase-activating proteins for heterotrimeric 
G-protein alpha-subunits.
Length=117

 Score = 60.7 bits (148),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 25/74 (34%), Positives = 34/74 (46%), Gaps = 4/74 (5%)

Query  538  RLNHILQDPALRLLFREFLRFSLCEENLSFYLDVSEFTAAYHKSEKMGAFKKADA-VRET  596
              + +L+D   R LFR+FL     EENL F+L   EF  A    E++   KKA     E 
Sbjct  1    SFDSLLEDQPGRRLFRQFLESEFSEENLEFWLACEEFKKADPDEERL---KKAKEIYNEF  57

Query  597  LAAAYGKPLFIGDS  610
            LA    K + +   
Sbjct  58   LAPGSPKEINLDSD  71



Lambda      K        H        a         alpha
   0.315    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00012109

Length=712
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459870 pfam00615, RGS, Regulator of G protein signaling domai...  128     1e-35
CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, a...  74.2    5e-17


>CDD:459870 pfam00615, RGS, Regulator of G protein signaling domain.  RGS 
family members are GTPase-activating proteins for heterotrimeric 
G-protein alpha-subunits.
Length=117

 Score = 128 bits (324),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 68/139 (49%), Gaps = 25/139 (18%)

Query  538  RLNHILQDPALRLLFREFLRFSLCEENLSFYLDVSEFTAAYHKSEKMGAFKKADAVRETL  597
              + +L+D   R LFR+FL     EENL F+L   E             FKKAD   E L
Sbjct  1    SFDSLLEDQPGRRLFRQFLESEFSEENLEFWLACEE-------------FKKADPDEERL  47

Query  598  AAAYGLYNAFLAPGSPCELNIDHALRNSLASRMTKAVGDDESMFKSLQEVVQLFEMAQTS  657
              A  +YN FLAPGSP E+N+D  LR  +   + K    D            LF+ AQ  
Sbjct  48   KKAKEIYNEFLAPGSPKEINLDSDLREEIRENLEKEPTRD------------LFDEAQAE  95

Query  658  VFKLMSSDSVPKFLRDPKY  676
            V++LM  DS P+FL+ P Y
Sbjct  96   VYELMEKDSYPRFLKSPLY  114


>CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin 
(DEP).  The DEP domain is responsible for mediating intracellular 
protein targeting and regulation of protein stability 
in the cell. The DEP domain is present in a number of 
signaling molecules, including Regulator of G protein Signaling 
(RGS) proteins, and has been implicated in membrane targeting. 
New findings in yeast, however, demonstrate a major 
role for a DEP domain in mediating the interaction of an RGS 
protein to the C-terminal tail of a GPCR, thus placing RGS 
in close proximity with its substrate G protein alpha subunit.
Length=71

 Score = 74.2 bits (183),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 31/80 (39%), Positives = 38/80 (48%), Gaps = 11/80 (14%)

Query  423  GVKMAKERKINDKIYMNTFTGKAAVDWLMDCSTTIERRETVLIAELFVKYGLITMLQEDK  482
            GVK+   RK   K Y N FTG  AVDWLMD    I R E V + +L +  GLI  + +  
Sbjct  1    GVKLKDRRKHL-KTYPNCFTGSEAVDWLMDNLEIITREEAVELGQLLLDQGLIHHVGDKH  59

Query  483  GYPQPDASIVVFQPSKYAIY  502
            G          F+ S Y  Y
Sbjct  60   GL---------FKDS-YYFY  69



Lambda      K        H        a         alpha
   0.315    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 912895010


Query= TCONS_00012111

Length=712
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459870 pfam00615, RGS, Regulator of G protein signaling domai...  128     1e-35
CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, a...  74.2    5e-17


>CDD:459870 pfam00615, RGS, Regulator of G protein signaling domain.  RGS 
family members are GTPase-activating proteins for heterotrimeric 
G-protein alpha-subunits.
Length=117

 Score = 128 bits (324),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 68/139 (49%), Gaps = 25/139 (18%)

Query  538  RLNHILQDPALRLLFREFLRFSLCEENLSFYLDVSEFTAAYHKSEKMGAFKKADAVRETL  597
              + +L+D   R LFR+FL     EENL F+L   E             FKKAD   E L
Sbjct  1    SFDSLLEDQPGRRLFRQFLESEFSEENLEFWLACEE-------------FKKADPDEERL  47

Query  598  AAAYGLYNAFLAPGSPCELNIDHALRNSLASRMTKAVGDDESMFKSLQEVVQLFEMAQTS  657
              A  +YN FLAPGSP E+N+D  LR  +   + K    D            LF+ AQ  
Sbjct  48   KKAKEIYNEFLAPGSPKEINLDSDLREEIRENLEKEPTRD------------LFDEAQAE  95

Query  658  VFKLMSSDSVPKFLRDPKY  676
            V++LM  DS P+FL+ P Y
Sbjct  96   VYELMEKDSYPRFLKSPLY  114


>CDD:459867 pfam00610, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin 
(DEP).  The DEP domain is responsible for mediating intracellular 
protein targeting and regulation of protein stability 
in the cell. The DEP domain is present in a number of 
signaling molecules, including Regulator of G protein Signaling 
(RGS) proteins, and has been implicated in membrane targeting. 
New findings in yeast, however, demonstrate a major 
role for a DEP domain in mediating the interaction of an RGS 
protein to the C-terminal tail of a GPCR, thus placing RGS 
in close proximity with its substrate G protein alpha subunit.
Length=71

 Score = 74.2 bits (183),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 31/80 (39%), Positives = 38/80 (48%), Gaps = 11/80 (14%)

Query  423  GVKMAKERKINDKIYMNTFTGKAAVDWLMDCSTTIERRETVLIAELFVKYGLITMLQEDK  482
            GVK+   RK   K Y N FTG  AVDWLMD    I R E V + +L +  GLI  + +  
Sbjct  1    GVKLKDRRKHL-KTYPNCFTGSEAVDWLMDNLEIITREEAVELGQLLLDQGLIHHVGDKH  59

Query  483  GYPQPDASIVVFQPSKYAIY  502
            G          F+ S Y  Y
Sbjct  60   GL---------FKDS-YYFY  69



Lambda      K        H        a         alpha
   0.315    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 912895010


Query= TCONS_00012113

Length=924
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  63.7    1e-12


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 63.7 bits (155),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query  291  LRTRESVSKDHIVGEITGKIGLLRDYCLDPSNRWQELRHPEPFVFFHPQLPI----YIDS  346
            L   E + K   +GE    + + ++        + +      +  +   L       ID+
Sbjct  4    LFATEDIPKGEFIGEYVEVLLITKEEADKRELLYYDKLELRLWGPYLFTLDEDSEYCIDA  63

Query  347  R--HEGSILRYVRRSCRPNVTIKTYITNEVEYHFCFVAKEDISANSEITAMWY  397
            R  + G+  R++  SC PN  ++    N         A  DI    E+T + Y
Sbjct  64   RALYYGNWARFINHSCDPNCEVRVVYVNG-GPRIVIFALRDIKPGEELT-IDY  114



Lambda      K        H        a         alpha
   0.311    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1190041106


Query= TCONS_00012112

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00018103

Length=924
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  63.7    1e-12


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 63.7 bits (155),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query  291  LRTRESVSKDHIVGEITGKIGLLRDYCLDPSNRWQELRHPEPFVFFHPQLPI----YIDS  346
            L   E + K   +GE    + + ++        + +      +  +   L       ID+
Sbjct  4    LFATEDIPKGEFIGEYVEVLLITKEEADKRELLYYDKLELRLWGPYLFTLDEDSEYCIDA  63

Query  347  R--HEGSILRYVRRSCRPNVTIKTYITNEVEYHFCFVAKEDISANSEITAMWY  397
            R  + G+  R++  SC PN  ++    N         A  DI    E+T + Y
Sbjct  64   RALYYGNWARFINHSCDPNCEVRVVYVNG-GPRIVIFALRDIKPGEELT-IDY  114



Lambda      K        H        a         alpha
   0.311    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1190041106


Query= TCONS_00012115

Length=924
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  63.7    1e-12


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 63.7 bits (155),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query  291  LRTRESVSKDHIVGEITGKIGLLRDYCLDPSNRWQELRHPEPFVFFHPQLPI----YIDS  346
            L   E + K   +GE    + + ++        + +      +  +   L       ID+
Sbjct  4    LFATEDIPKGEFIGEYVEVLLITKEEADKRELLYYDKLELRLWGPYLFTLDEDSEYCIDA  63

Query  347  R--HEGSILRYVRRSCRPNVTIKTYITNEVEYHFCFVAKEDISANSEITAMWY  397
            R  + G+  R++  SC PN  ++    N         A  DI    E+T + Y
Sbjct  64   RALYYGNWARFINHSCDPNCEVRVVYVNG-GPRIVIFALRDIKPGEELT-IDY  114



Lambda      K        H        a         alpha
   0.311    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1190041106


Query= TCONS_00012116

Length=924
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  63.7    1e-12


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 63.7 bits (155),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query  291  LRTRESVSKDHIVGEITGKIGLLRDYCLDPSNRWQELRHPEPFVFFHPQLPI----YIDS  346
            L   E + K   +GE    + + ++        + +      +  +   L       ID+
Sbjct  4    LFATEDIPKGEFIGEYVEVLLITKEEADKRELLYYDKLELRLWGPYLFTLDEDSEYCIDA  63

Query  347  R--HEGSILRYVRRSCRPNVTIKTYITNEVEYHFCFVAKEDISANSEITAMWY  397
            R  + G+  R++  SC PN  ++    N         A  DI    E+T + Y
Sbjct  64   RALYYGNWARFINHSCDPNCEVRVVYVNG-GPRIVIFALRDIKPGEELT-IDY  114



Lambda      K        H        a         alpha
   0.311    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0702    0.140     1.90     42.6     43.6 

Effective search space used: 1190041106


Query= TCONS_00018104

Length=924
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  63.7    1e-12


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 63.7 bits (155),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query  291  LRTRESVSKDHIVGEITGKIGLLRDYCLDPSNRWQELRHPEPFVFFHPQLPI----YIDS  346
            L   E + K   +GE    + + ++        + +      +  +   L       ID+
Sbjct  4    LFATEDIPKGEFIGEYVEVLLITKEEADKRELLYYDKLELRLWGPYLFTLDEDSEYCIDA  63

Query  347  R--HEGSILRYVRRSCRPNVTIKTYITNEVEYHFCFVAKEDISANSEITAMWY  397
            R  + G+  R++  SC PN  ++    N         A  DI    E+T + Y
Sbjct  64   RALYYGNWARFINHSCDPNCEVRVVYVNG-GPRIVIFALRDIKPGEELT-IDY  114



Lambda      K        H        a         alpha
   0.311    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1190041106


Query= TCONS_00012114

Length=924
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  63.7    1e-12


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 63.7 bits (155),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query  291  LRTRESVSKDHIVGEITGKIGLLRDYCLDPSNRWQELRHPEPFVFFHPQLPI----YIDS  346
            L   E + K   +GE    + + ++        + +      +  +   L       ID+
Sbjct  4    LFATEDIPKGEFIGEYVEVLLITKEEADKRELLYYDKLELRLWGPYLFTLDEDSEYCIDA  63

Query  347  R--HEGSILRYVRRSCRPNVTIKTYITNEVEYHFCFVAKEDISANSEITAMWY  397
            R  + G+  R++  SC PN  ++    N         A  DI    E+T + Y
Sbjct  64   RALYYGNWARFINHSCDPNCEVRVVYVNG-GPRIVIFALRDIKPGEELT-IDY  114



Lambda      K        H        a         alpha
   0.311    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1190041106


Query= TCONS_00012117

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.148    0.502    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00012118

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460008 pfam00953, Glycos_transf_4, Glycosyl transferase family 4  95.7    6e-24


>CDD:460008 pfam00953, Glycos_transf_4, Glycosyl transferase family 4.  
Length=158

 Score = 95.7 bits (239),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 21/178 (12%)

Query  147  LSGLLSLQCIVILGIGDDLLDIRWRHKVLIPAFGAIPMLIVYFVDFGVTHVVVPVPLQPY  206
            L  LL    I ++G+ DDLL +  R K+L+ A  A+ +L++  +      +       P+
Sbjct  1    LGLLLGALLIGLIGLIDDLLGLSARIKLLLQALAALILLVLGGIGLTSLGL-------PF  53

Query  207  LGTFVDLGWLYYVYMAAIAIFC-PNAINMLAGINGVEVAQSLVIAVLLVANDLLYIAPTT  265
             G  ++LG    + +   AI    NA+N + G++G+    +++ A+ L            
Sbjct  54   GGGSLELGPWLSILLTLFAIVGLTNAVNFIDGLDGLAGGVAIIAALALGI----------  103

Query  266  PFPHPATDSHLFSLYFLLPFIGVSVALLCHNWYPSKVFVGDTYCYFAGMVFAVVGILG  323
                     +L      L  +G  +  L  N+YP+K+F+GD+   F G + AV+ I+G
Sbjct  104  ---IAYLLGNLELALLSLALLGALLGFLPFNFYPAKIFMGDSGSLFLGFLLAVLAIIG  158



Lambda      K        H        a         alpha
   0.330    0.145    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00012119

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                114     3e-29


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 114 bits (287),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 23/246 (9%)

Query  57   MIHLFVLYILNAVAMGVMSPFNDPSLTNHGVGAGTSPYLVAVKRSGIPVLPVVVTALIFL  116
            +  + + YIL+ +A+G++ P+NDP L N    A  SP+++  K  GI  L  ++ A+I  
Sbjct  231  IWRITIFYILSLLAIGLLVPWNDPGLLNDSASA-ASPFVIFFKFLGISGLAPLINAVILT  289

Query  117  SSVASGRSFLFTSSRTLHSLAEAGHAPELFRRRNRWDVPYVAVITSAFFSSLAYFSAMIS  176
            +++++  S L++ SR L+SLA  G AP+  ++ ++  VP  A++ S   S LA   A ++
Sbjct  290  AALSAANSSLYSGSRMLYSLARDGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLASLN  349

Query  177  SSIVFNSLMYFITTCGCISWVGTCVVYLYFRRQ-------TEALGFTSVHRARIQPYGVY  229
             +IVFN L+      G I W    + +L FR+         + L F    +A + P GV 
Sbjct  350  PAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPF----KAPLGPLGVI  405

Query  230  FGIVTCTLLPIVNTFIIATPSQLAASKLLPVYFGISSFFLLY------IGHRVGYAVIWR  283
             G+    ++ I+       P         P  +G  SF   Y      +   +G  +  +
Sbjct  406  LGLAAIIIILIIQFLYAFLP-----VPGGPKNWGAGSFAAAYLIVLLFLIILIGVKLHVK  460

Query  284  RTRMKK  289
              + + 
Sbjct  461  NWKPQL  466



Lambda      K        H        a         alpha
   0.326    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00012120

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460008 pfam00953, Glycos_transf_4, Glycosyl transferase family 4  95.0    5e-24


>CDD:460008 pfam00953, Glycos_transf_4, Glycosyl transferase family 4.  
Length=158

 Score = 95.0 bits (237),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 21/178 (12%)

Query  62   LSGLLSLQCIVILGIGDDLLDIRWRHKVLIPAFGAIPMLIVYFVDFGVTHVVVPVPLQPY  121
            L  LL    I ++G+ DDLL +  R K+L+ A  A+ +L++  +      +       P+
Sbjct  1    LGLLLGALLIGLIGLIDDLLGLSARIKLLLQALAALILLVLGGIGLTSLGL-------PF  53

Query  122  LGTFVDLGWLYYVYMAAIAIFC-PNAINMLAGINGVEVAQSLVIAVLLVANDLLYIAPTT  180
             G  ++LG    + +   AI    NA+N + G++G+    +++ A+ L            
Sbjct  54   GGGSLELGPWLSILLTLFAIVGLTNAVNFIDGLDGLAGGVAIIAALALGI----------  103

Query  181  PFPHPATDSHLFSLYFLLPFIGVSVALLCHNWYPSKVFVGDTYCYFAGMVFAVVGILG  238
                     +L      L  +G  +  L  N+YP+K+F+GD+   F G + AV+ I+G
Sbjct  104  ---IAYLLGNLELALLSLALLGALLGFLPFNFYPAKIFMGDSGSLFLGFLLAVLAIIG  158



Lambda      K        H        a         alpha
   0.331    0.146    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00012121

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460008 pfam00953, Glycos_transf_4, Glycosyl transferase family 4  95.4    9e-24


>CDD:460008 pfam00953, Glycos_transf_4, Glycosyl transferase family 4.  
Length=158

 Score = 95.4 bits (238),  Expect = 9e-24, Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 21/178 (12%)

Query  147  LSGLLSLQCIVILGIGDDLLDIRWRHKVLIPAFGAIPMLIVYFVDFGVTHVVVPVPLQPY  206
            L  LL    I ++G+ DDLL +  R K+L+ A  A+ +L++  +      +       P+
Sbjct  1    LGLLLGALLIGLIGLIDDLLGLSARIKLLLQALAALILLVLGGIGLTSLGL-------PF  53

Query  207  LGTFVDLGWLYYVYMAAIAIFC-PNAINMLAGINGVEVAQSLVIAVLLVANDLLYIAPTT  265
             G  ++LG    + +   AI    NA+N + G++G+    +++ A+ L            
Sbjct  54   GGGSLELGPWLSILLTLFAIVGLTNAVNFIDGLDGLAGGVAIIAALALGI----------  103

Query  266  PFPHPATDSHLFSLYFLLPFIGVSVALLCHNWYPSKVFVGDTYCYFAGMVFAVVGILG  323
                     +L      L  +G  +  L  N+YP+K+F+GD+   F G + AV+ I+G
Sbjct  104  ---IAYLLGNLELALLSLALLGALLGFLPFNFYPAKIFMGDSGSLFLGFLLAVLAIIG  158



Lambda      K        H        a         alpha
   0.330    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 590476040


Query= TCONS_00012122

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460008 pfam00953, Glycos_transf_4, Glycosyl transferase family 4  95.7    6e-24


>CDD:460008 pfam00953, Glycos_transf_4, Glycosyl transferase family 4.  
Length=158

 Score = 95.7 bits (239),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 21/178 (12%)

Query  147  LSGLLSLQCIVILGIGDDLLDIRWRHKVLIPAFGAIPMLIVYFVDFGVTHVVVPVPLQPY  206
            L  LL    I ++G+ DDLL +  R K+L+ A  A+ +L++  +      +       P+
Sbjct  1    LGLLLGALLIGLIGLIDDLLGLSARIKLLLQALAALILLVLGGIGLTSLGL-------PF  53

Query  207  LGTFVDLGWLYYVYMAAIAIFC-PNAINMLAGINGVEVAQSLVIAVLLVANDLLYIAPTT  265
             G  ++LG    + +   AI    NA+N + G++G+    +++ A+ L            
Sbjct  54   GGGSLELGPWLSILLTLFAIVGLTNAVNFIDGLDGLAGGVAIIAALALGI----------  103

Query  266  PFPHPATDSHLFSLYFLLPFIGVSVALLCHNWYPSKVFVGDTYCYFAGMVFAVVGILG  323
                     +L      L  +G  +  L  N+YP+K+F+GD+   F G + AV+ I+G
Sbjct  104  ---IAYLLGNLELALLSLALLGALLGFLPFNFYPAKIFMGDSGSLFLGFLLAVLAIIG  158



Lambda      K        H        a         alpha
   0.330    0.145    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00018106

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460008 pfam00953, Glycos_transf_4, Glycosyl transferase family 4  98.4    4e-25


>CDD:460008 pfam00953, Glycos_transf_4, Glycosyl transferase family 4.  
Length=158

 Score = 98.4 bits (246),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 21/178 (12%)

Query  83   LSGLLSLQCIVILGIGDDLLDIRWRHKVLIPAFGAIPMLIVYFVDFGVTHVVVPVPLQPY  142
            L  LL    I ++G+ DDLL +  R K+L+ A  A+ +L++  +      +       P+
Sbjct  1    LGLLLGALLIGLIGLIDDLLGLSARIKLLLQALAALILLVLGGIGLTSLGL-------PF  53

Query  143  LGTFVDLGWLYYVYMAAIAIFC-PNAINMLAGINGVEVAQSLVIAVLLVANDLLYIAPTT  201
             G  ++LG    + +   AI    NA+N + G++G+    +++ A+ L            
Sbjct  54   GGGSLELGPWLSILLTLFAIVGLTNAVNFIDGLDGLAGGVAIIAALALGI----------  103

Query  202  PFPHPATDSHLFSLYFLLPFIGVSVALLCHNWYPSKVFVGDTYCYFAGMVFAVVGILG  259
                     +L      L  +G  +  L  N+YP+K+F+GD+   F G + AV+ I+G
Sbjct  104  ---IAYLLGNLELALLSLALLGALLGFLPFNFYPAKIFMGDSGSLFLGFLLAVLAIIG  158



Lambda      K        H        a         alpha
   0.330    0.146    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00012123

Length=329
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460008 pfam00953, Glycos_transf_4, Glycosyl transferase family 4  95.0    3e-24


>CDD:460008 pfam00953, Glycos_transf_4, Glycosyl transferase family 4.  
Length=158

 Score = 95.0 bits (237),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 21/178 (12%)

Query  8    LSGLLSLQCIVILGIGDDLLDIRWRHKVLIPAFGAIPMLIVYFVDFGVTHVVVPVPLQPY  67
            L  LL    I ++G+ DDLL +  R K+L+ A  A+ +L++  +      +       P+
Sbjct  1    LGLLLGALLIGLIGLIDDLLGLSARIKLLLQALAALILLVLGGIGLTSLGL-------PF  53

Query  68   LGTFVDLGWLYYVYMAAIAIFC-PNAINMLAGINGVEVAQSLVIAVLLVANDLLYIAPTT  126
             G  ++LG    + +   AI    NA+N + G++G+    +++ A+ L            
Sbjct  54   GGGSLELGPWLSILLTLFAIVGLTNAVNFIDGLDGLAGGVAIIAALALGI----------  103

Query  127  PFPHPATDSHLFSLYFLLPFIGVSVALLCHNWYPSKVFVGDTYCYFAGMVFAVVGILG  184
                     +L      L  +G  +  L  N+YP+K+F+GD+   F G + AV+ I+G
Sbjct  104  ---IAYLLGNLELALLSLALLGALLGFLPFNFYPAKIFMGDSGSLFLGFLLAVLAIIG  158



Lambda      K        H        a         alpha
   0.331    0.146    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 385413556


Query= TCONS_00012124

Length=777
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459764 pfam00330, Aconitase, Aconitase family (aconitate hydr...  703     0.0  
CDD:459908 pfam00694, Aconitase_C, Aconitase C-terminal domain. M...  176     2e-52


>CDD:459764 pfam00330, Aconitase, Aconitase family (aconitate hydratase). 
 
Length=460

 Score = 703 bits (1817),  Expect = 0.0, Method: Composition-based stats.
 Identities = 254/462 (55%), Positives = 316/462 (68%), Gaps = 24/462 (5%)

Query  13   DKVLDHHIVNEQEDGTILIYI-DRHLVHEVTSPQAFEGLKNAGRKVRRPDCTLATVDHNI  71
            +K+ D H+V E  DG++L YI DR L+H+VTSPQAF  L+ AGR VRRP  T AT+DH +
Sbjct  1    EKIWDAHLVEEL-DGSLL-YIPDRVLMHDVTSPQAFVDLRAAGRAVRRPGGTPATIDHLV  58

Query  72   PTSSRKNF--KNVEEFIEETDSR--LQCTTLEQNVKDFGLTYFGMGDKRQGIVHIIGPEQ  127
            PT    +     +++ IE+  SR   Q   LE N K FG+ +   G   QGIVH +G E 
Sbjct  59   PTDLVIDHAPDALDKNIEDEISRNKEQYDFLEWNAKKFGIRFVPPG---QGIVHQVGLEY  115

Query  128  GFTLPGTTVVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLLTRRSKNMRIQVDGELP  187
            G  LPG T+V  DSHT+THG  GALAFG+G SE EHVLATQ L  ++ K + +++ G+LP
Sbjct  116  GLALPGMTIVGTDSHTTTHGGLGALAFGVGGSEAEHVLATQPLEMKKPKVVGVKLTGKLP  175

Query  188  PGVTSKDVVLHIIGVIGTAGGTGAVIEFCGSVIRGLSMEARMSMCNMSIEAGARAGMIAP  247
            PGVT+KDV+L IIG +G  GGTG V+EF G  +R LSME R ++CNM+IE GA AG+  P
Sbjct  176  PGVTAKDVILAIIGKLGVKGGTGKVVEFFGPGVRSLSMEGRATICNMAIEYGATAGLFPP  235

Query  248  DETTFEYLK--GRPLAPKYDSAEWKRAVAFWSSLASDEGAVYDKTVVLDGKDIIPTVSWG  305
            DETTFEYL+  GRP APK     + +AVA W +LASD GA YDK V +D   I P V+  
Sbjct  236  DETTFEYLRATGRPEAPK--GEAYDKAVA-WKTLASDPGAEYDKVVEIDLSTIEPMVTGP  292

Query  306  TSPQDVVPITGVVPGPDDFEDENRKVACKRALEYMGLVAGTRIQDIPVDKVFIGSCTNAR  365
            T PQD VP++ +VP P  F D  ++ A +RALEYMGL  GT + D  VD  FIGSCTN+ 
Sbjct  293  TRPQDAVPLSELVPDP--FADAVKRKAAERALEYMGLGPGTPLSDGKVDIAFIGSCTNSS  350

Query  366  IEDLRAAAKVVR-----GKKVAANIKRAMVVPGSGLVKQQAEAEGLDRVFTDAGFEWREA  420
            IEDLRAAA +++     G KVA  +K A VVPGS +V+  AEAEGLD++  +AGFEWR  
Sbjct  351  IEDLRAAAGLLKKAVEKGLKVAPGVK-ASVVPGSEVVRAYAEAEGLDKILEEAGFEWRGP  409

Query  421  GCSMCLGMNPDILSPQERCASTSNRNFEGRQGAGGRTHLMSP  462
            GCSMC+G N D L P ERC S+SNRNFEGRQG GGRTHL SP
Sbjct  410  GCSMCIG-NSDRLPPGERCVSSSNRNFEGRQGPGGRTHLASP  450


>CDD:459908 pfam00694, Aconitase_C, Aconitase C-terminal domain.  Members 
of this family usually also match to pfam00330. This domain 
undergoes conformational change in the enzyme mechanism.
Length=131

 Score = 176 bits (448),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 64/131 (49%), Positives = 75/131 (57%), Gaps = 5/131 (4%)

Query  538  LPKFTTLRGIAAPMDRSNVDTDAIIPKQFLKTIKRTGLGSALFYELRYNPA---DGSENK  594
            +P F  L+G   P   SNVDTD IIPKQFL TI   G+G+  F   RY         EN 
Sbjct  1    MPVFLKLKGKTTPDFNSNVDTDLIIPKQFLGTIANIGIGNINFEGWRYGKVRYLPDGENP  60

Query  595  SFVLNQEPYRN--AKILVVTGPNFGCGSSREHAPWALLDFGIKCIIAPSFADIFFNNTFK  652
             F      Y+   A I+V+ G NFGCGSSREHA WAL D GIK +IA SFA I  NN  K
Sbjct  61   DFYDAAMRYKQHGAPIVVIGGKNFGCGSSREHAAWALRDLGIKAVIAESFARIHRNNLIK  120

Query  653  NGMLPVVISDP  663
            NG+LP+   + 
Sbjct  121  NGLLPLEFPEE  131



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 993868816


Query= TCONS_00018108

Length=776
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459764 pfam00330, Aconitase, Aconitase family (aconitate hydr...  703     0.0  
CDD:459908 pfam00694, Aconitase_C, Aconitase C-terminal domain. M...  176     2e-52


>CDD:459764 pfam00330, Aconitase, Aconitase family (aconitate hydratase). 
 
Length=460

 Score = 703 bits (1817),  Expect = 0.0, Method: Composition-based stats.
 Identities = 254/462 (55%), Positives = 316/462 (68%), Gaps = 24/462 (5%)

Query  13   DKVLDHHIVNEQEDGTILIYI-DRHLVHEVTSPQAFEGLKNAGRKVRRPDCTLATVDHNI  71
            +K+ D H+V E  DG++L YI DR L+H+VTSPQAF  L+ AGR VRRP  T AT+DH +
Sbjct  1    EKIWDAHLVEEL-DGSLL-YIPDRVLMHDVTSPQAFVDLRAAGRAVRRPGGTPATIDHLV  58

Query  72   PTSSRKNF--KNVEEFIEETDSR--LQCTTLEQNVKDFGLTYFGMGDKRQGIVHIIGPEQ  127
            PT    +     +++ IE+  SR   Q   LE N K FG+ +   G   QGIVH +G E 
Sbjct  59   PTDLVIDHAPDALDKNIEDEISRNKEQYDFLEWNAKKFGIRFVPPG---QGIVHQVGLEY  115

Query  128  GFTLPGTTVVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLLTRRSKNMRIQVDGELP  187
            G  LPG T+V  DSHT+THG  GALAFG+G SE EHVLATQ L  ++ K + +++ G+LP
Sbjct  116  GLALPGMTIVGTDSHTTTHGGLGALAFGVGGSEAEHVLATQPLEMKKPKVVGVKLTGKLP  175

Query  188  PGVTSKDVVLHIIGVIGTAGGTGAVIEFCGSVIRGLSMEARMSMCNMSIEAGARAGMIAP  247
            PGVT+KDV+L IIG +G  GGTG V+EF G  +R LSME R ++CNM+IE GA AG+  P
Sbjct  176  PGVTAKDVILAIIGKLGVKGGTGKVVEFFGPGVRSLSMEGRATICNMAIEYGATAGLFPP  235

Query  248  DETTFEYLK--GRPLAPKYDSAEWKRAVAFWSSLASDEGAVYDKTVVLDGKDIIPTVSWG  305
            DETTFEYL+  GRP APK     + +AVA W +LASD GA YDK V +D   I P V+  
Sbjct  236  DETTFEYLRATGRPEAPK--GEAYDKAVA-WKTLASDPGAEYDKVVEIDLSTIEPMVTGP  292

Query  306  TSPQDVVPITGVVPGPDDFEDENRKVACKRALEYMGLVAGTRIQDIPVDKVFIGSCTNAR  365
            T PQD VP++ +VP P  F D  ++ A +RALEYMGL  GT + D  VD  FIGSCTN+ 
Sbjct  293  TRPQDAVPLSELVPDP--FADAVKRKAAERALEYMGLGPGTPLSDGKVDIAFIGSCTNSS  350

Query  366  IEDLRAAAKVVR-----GKKVAANIKRAMVVPGSGLVKQQAEAEGLDRVFTDAGFEWREA  420
            IEDLRAAA +++     G KVA  +K A VVPGS +V+  AEAEGLD++  +AGFEWR  
Sbjct  351  IEDLRAAAGLLKKAVEKGLKVAPGVK-ASVVPGSEVVRAYAEAEGLDKILEEAGFEWRGP  409

Query  421  GCSMCLGMNPDILSPQERCASTSNRNFEGRQGAGGRTHLMSP  462
            GCSMC+G N D L P ERC S+SNRNFEGRQG GGRTHL SP
Sbjct  410  GCSMCIG-NSDRLPPGERCVSSSNRNFEGRQGPGGRTHLASP  450


>CDD:459908 pfam00694, Aconitase_C, Aconitase C-terminal domain.  Members 
of this family usually also match to pfam00330. This domain 
undergoes conformational change in the enzyme mechanism.
Length=131

 Score = 176 bits (448),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 64/131 (49%), Positives = 75/131 (57%), Gaps = 5/131 (4%)

Query  538  LPKFTTLRGIAAPMDRSNVDTDAIIPKQFLKTIKRTGLGSALFYELRYNPA---DGSENK  594
            +P F  L+G   P   SNVDTD IIPKQFL TI   G+G+  F   RY         EN 
Sbjct  1    MPVFLKLKGKTTPDFNSNVDTDLIIPKQFLGTIANIGIGNINFEGWRYGKVRYLPDGENP  60

Query  595  SFVLNQEPYRN--AKILVVTGPNFGCGSSREHAPWALLDFGIKCIIAPSFADIFFNNTFK  652
             F      Y+   A I+V+ G NFGCGSSREHA WAL D GIK +IA SFA I  NN  K
Sbjct  61   DFYDAAMRYKQHGAPIVVIGGKNFGCGSSREHAAWALRDLGIKAVIAESFARIHRNNLIK  120

Query  653  NGMLPVVISDP  663
            NG+LP+   + 
Sbjct  121  NGLLPLEFPEE  131



Lambda      K        H        a         alpha
   0.317    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 992413664


Query= TCONS_00018107

Length=777
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459764 pfam00330, Aconitase, Aconitase family (aconitate hydr...  699     0.0  
CDD:459908 pfam00694, Aconitase_C, Aconitase C-terminal domain. M...  176     2e-52


>CDD:459764 pfam00330, Aconitase, Aconitase family (aconitate hydratase). 
 
Length=460

 Score = 699 bits (1807),  Expect = 0.0, Method: Composition-based stats.
 Identities = 254/462 (55%), Positives = 317/462 (69%), Gaps = 24/462 (5%)

Query  13   DKVLDHHIVNEQEDGTILIYI-DRHLVHEVTSPQAFEGLKNAGRKVRRPDCTLATVDHVL  71
            +K+ D H+V E  DG++L YI DR L+H+VTSPQAF  L+ AGR VRRP  T AT+DH++
Sbjct  1    EKIWDAHLVEEL-DGSLL-YIPDRVLMHDVTSPQAFVDLRAAGRAVRRPGGTPATIDHLV  58

Query  72   PTSSRKNF--KNVEEFIEETDSR--LQCTTLEQNVKDFGLTYFGMGDKRQGIVHIIGPEQ  127
            PT    +     +++ IE+  SR   Q   LE N K FG+ +   G   QGIVH +G E 
Sbjct  59   PTDLVIDHAPDALDKNIEDEISRNKEQYDFLEWNAKKFGIRFVPPG---QGIVHQVGLEY  115

Query  128  GFTLPGTTVVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLLTRRSKNMRIQVDGELP  187
            G  LPG T+V  DSHT+THG  GALAFG+G SE EHVLATQ L  ++ K + +++ G+LP
Sbjct  116  GLALPGMTIVGTDSHTTTHGGLGALAFGVGGSEAEHVLATQPLEMKKPKVVGVKLTGKLP  175

Query  188  PGVTSKDVVLHIIGVIGTAGGTGAVIEFCGSVIRGLSMEARMSMCNMSIEAGARAGMIAP  247
            PGVT+KDV+L IIG +G  GGTG V+EF G  +R LSME R ++CNM+IE GA AG+  P
Sbjct  176  PGVTAKDVILAIIGKLGVKGGTGKVVEFFGPGVRSLSMEGRATICNMAIEYGATAGLFPP  235

Query  248  DETTFEYLK--GRPLAPKYDSAEWKRAVAFWSSLASDEGAVYDKTVVLDGKDIIPTVSWG  305
            DETTFEYL+  GRP APK     + +AVA W +LASD GA YDK V +D   I P V+  
Sbjct  236  DETTFEYLRATGRPEAPK--GEAYDKAVA-WKTLASDPGAEYDKVVEIDLSTIEPMVTGP  292

Query  306  TSPQDVVPITGVVPGPDDFEDENRKVACKRALEYMGLVAGTRIQDIPVDKVFIGSCTNAR  365
            T PQD VP++ +VP P  F D  ++ A +RALEYMGL  GT + D  VD  FIGSCTN+ 
Sbjct  293  TRPQDAVPLSELVPDP--FADAVKRKAAERALEYMGLGPGTPLSDGKVDIAFIGSCTNSS  350

Query  366  IEDLRAAAKVVR-----GKKVAANIKRAMVVPGSGLVKQQAEAEGLDRVFTDAGFEWREA  420
            IEDLRAAA +++     G KVA  +K A VVPGS +V+  AEAEGLD++  +AGFEWR  
Sbjct  351  IEDLRAAAGLLKKAVEKGLKVAPGVK-ASVVPGSEVVRAYAEAEGLDKILEEAGFEWRGP  409

Query  421  GCSMCLGMNPDILSPQERCASTSNRNFEGRQGAGGRTHLMSP  462
            GCSMC+G N D L P ERC S+SNRNFEGRQG GGRTHL SP
Sbjct  410  GCSMCIG-NSDRLPPGERCVSSSNRNFEGRQGPGGRTHLASP  450


>CDD:459908 pfam00694, Aconitase_C, Aconitase C-terminal domain.  Members 
of this family usually also match to pfam00330. This domain 
undergoes conformational change in the enzyme mechanism.
Length=131

 Score = 176 bits (449),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 64/131 (49%), Positives = 75/131 (57%), Gaps = 5/131 (4%)

Query  538  LPKFTTLRGIAAPMDRSNVDTDAIIPKQFLKTIKRTGLGSALFYELRYNPA---DGSENK  594
            +P F  L+G   P   SNVDTD IIPKQFL TI   G+G+  F   RY         EN 
Sbjct  1    MPVFLKLKGKTTPDFNSNVDTDLIIPKQFLGTIANIGIGNINFEGWRYGKVRYLPDGENP  60

Query  595  SFVLNQEPYRN--AKILVVTGPNFGCGSSREHAPWALLDFGIKCIIAPSFADIFFNNTFK  652
             F      Y+   A I+V+ G NFGCGSSREHA WAL D GIK +IA SFA I  NN  K
Sbjct  61   DFYDAAMRYKQHGAPIVVIGGKNFGCGSSREHAAWALRDLGIKAVIAESFARIHRNNLIK  120

Query  653  NGMLPVVISDP  663
            NG+LP+   + 
Sbjct  121  NGLLPLEFPEE  131



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 993868816


Query= TCONS_00012125

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459764 pfam00330, Aconitase, Aconitase family (aconitate hydr...  592     0.0  
CDD:459908 pfam00694, Aconitase_C, Aconitase C-terminal domain. M...  176     7e-53


>CDD:459764 pfam00330, Aconitase, Aconitase family (aconitate hydratase). 
 
Length=460

 Score = 592 bits (1529),  Expect = 0.0, Method: Composition-based stats.
 Identities = 206/353 (58%), Positives = 251/353 (71%), Gaps = 14/353 (4%)

Query  6    QGIVHIIGPEQGFTLPGTTVVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLLTRRSK  65
            QGIVH +G E G  LPG T+V  DSHT+THG  GALAFG+G SE EHVLATQ L  ++ K
Sbjct  105  QGIVHQVGLEYGLALPGMTIVGTDSHTTTHGGLGALAFGVGGSEAEHVLATQPLEMKKPK  164

Query  66   NMRIQVDGELPPGVTSKDVVLHIIGVIGTAGGTGAVIEFCGSVIRGLSMEARMSMCNMSI  125
             + +++ G+LPPGVT+KDV+L IIG +G  GGTG V+EF G  +R LSME R ++CNM+I
Sbjct  165  VVGVKLTGKLPPGVTAKDVILAIIGKLGVKGGTGKVVEFFGPGVRSLSMEGRATICNMAI  224

Query  126  EAGARAGMIAPDETTFEYLK--GRPLAPKYDSAEWKRAVAFWSSLASDEGAVYDKTVVLD  183
            E GA AG+  PDETTFEYL+  GRP APK     + +AVA W +LASD GA YDK V +D
Sbjct  225  EYGATAGLFPPDETTFEYLRATGRPEAPK--GEAYDKAVA-WKTLASDPGAEYDKVVEID  281

Query  184  GKDIIPTVSWGTSPQDVVPITGVVPGPDDFEDENRKVACKRALEYMGLVAGTRIQDIPVD  243
               I P V+  T PQD VP++ +VP P  F D  ++ A +RALEYMGL  GT + D  VD
Sbjct  282  LSTIEPMVTGPTRPQDAVPLSELVPDP--FADAVKRKAAERALEYMGLGPGTPLSDGKVD  339

Query  244  KVFIGSCTNARIEDLRAAAKVVR-----GKKVAANIKRAMVVPGSGLVKQQAEAEGLDRV  298
              FIGSCTN+ IEDLRAAA +++     G KVA  +K A VVPGS +V+  AEAEGLD++
Sbjct  340  IAFIGSCTNSSIEDLRAAAGLLKKAVEKGLKVAPGVK-ASVVPGSEVVRAYAEAEGLDKI  398

Query  299  FTDAGFEWREAGCSMCLGMNPDILSPQERCASTSNRNFEGRQGAGGRTHLMSP  351
              +AGFEWR  GCSMC+G N D L P ERC S+SNRNFEGRQG GGRTHL SP
Sbjct  399  LEEAGFEWRGPGCSMCIG-NSDRLPPGERCVSSSNRNFEGRQGPGGRTHLASP  450


>CDD:459908 pfam00694, Aconitase_C, Aconitase C-terminal domain.  Members 
of this family usually also match to pfam00330. This domain 
undergoes conformational change in the enzyme mechanism.
Length=131

 Score = 176 bits (448),  Expect = 7e-53, Method: Composition-based stats.
 Identities = 64/131 (49%), Positives = 75/131 (57%), Gaps = 5/131 (4%)

Query  427  LPKFTTLRGIAAPMDRSNVDTDAIIPKQFLKTIKRTGLGSALFYELRYNPA---DGSENK  483
            +P F  L+G   P   SNVDTD IIPKQFL TI   G+G+  F   RY         EN 
Sbjct  1    MPVFLKLKGKTTPDFNSNVDTDLIIPKQFLGTIANIGIGNINFEGWRYGKVRYLPDGENP  60

Query  484  SFVLNQEPYRN--AKILVVTGPNFGCGSSREHAPWALLDFGIKCIIAPSFADIFFNNTFK  541
             F      Y+   A I+V+ G NFGCGSSREHA WAL D GIK +IA SFA I  NN  K
Sbjct  61   DFYDAAMRYKQHGAPIVVIGGKNFGCGSSREHAAWALRDLGIKAVIAESFARIHRNNLIK  120

Query  542  NGMLPVVISDP  552
            NG+LP+   + 
Sbjct  121  NGLLPLEFPEE  131



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 845054670


Query= TCONS_00018109

Length=747


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 950214256


Query= TCONS_00018110

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00012126

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00012127

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396687 pfam02219, MTHFR, Methylenetetrahydrofolate reductase....  408     1e-140


>CDD:396687 pfam02219, MTHFR, Methylenetetrahydrofolate reductase.  This 
family includes the 5,10-methylenetetrahydrofolate reductase 
EC:1.7.99.5 from bacteria and methylenetetrahydrofolate reductase 
EC: 1.5.1.20 from eukaryotes. The structure for this 
domain is known to be a TIM barrel.
Length=287

 Score = 408 bits (1051),  Expect = 1e-140, Method: Composition-based stats.
 Identities = 146/280 (52%), Positives = 196/280 (70%), Gaps = 0/280 (0%)

Query  13   AGRVGISFEFFPPKTAQGVQNLYDRMDRMHSLGPSFIDITWGAGGRLSDLTCEMVNVAQS  72
             G+  ISFEFFPPKT  G +NL++R+DRM ++GP F+ +TWGAGG   D T  + +V Q 
Sbjct  8    EGKFFISFEFFPPKTENGERNLWERIDRMSAVGPLFVSVTWGAGGSTRDRTSSIASVIQQ  67

Query  73   VYGLETCMHLTCTDMPLEKVNAALSAAYKAGCTNILALRGDPPRDKEAWEATEGGLRYAK  132
              GLE CMHLTCTDM  E+++ AL  A   G  NILALRGDPP+  + WE  EGG +YA 
Sbjct  68   DTGLEACMHLTCTDMSKEELDDALEDAKALGIRNILALRGDPPKGTDDWERPEGGFKYAL  127

Query  133  DLVKYIREKFGNHFDIGVGGYPEGADDNPDVDQLIDHLKEKVDAGSSFVITQMFYDVDNF  192
            DLV+ IR+++G++FDIGV  YPEG  +       + +LKEKVDAG+ F+ITQ+F+DVDNF
Sbjct  128  DLVRLIRQEYGDYFDIGVAAYPEGHPEAKSWQADLKYLKEKVDAGADFIITQLFFDVDNF  187

Query  193  IEWVKKCRAKGITVPIIPGIMPISTYAAFIRRANWTKARIPPDWLEALEPVKNDDAAVKE  252
            + +V + RA GI +PIIPGIMPI++Y +  R A  +   IP + ++ LEP+K+DD AVK 
Sbjct  188  LRFVDRVRAAGIDIPIIPGIMPITSYKSLKRIAKLSGVSIPQELIDRLEPIKDDDEAVKS  247

Query  253  IGKRLVADMCRRLLAAGINHLHFYTMNLAQATQAVLEELK  292
            IG  L  +MC++LLA G+  LHFYT+N  +AT  +LE L 
Sbjct  248  IGIELAVEMCKKLLAEGVPGLHFYTLNREEATLEILENLG  287



Lambda      K        H        a         alpha
   0.318    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0728    0.140     1.90     42.6     43.6 

Effective search space used: 781585844


Query= TCONS_00012129

Length=578
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396687 pfam02219, MTHFR, Methylenetetrahydrofolate reductase....  409     3e-141


>CDD:396687 pfam02219, MTHFR, Methylenetetrahydrofolate reductase.  This 
family includes the 5,10-methylenetetrahydrofolate reductase 
EC:1.7.99.5 from bacteria and methylenetetrahydrofolate reductase 
EC: 1.5.1.20 from eukaryotes. The structure for this 
domain is known to be a TIM barrel.
Length=287

 Score = 409 bits (1052),  Expect = 3e-141, Method: Composition-based stats.
 Identities = 146/280 (52%), Positives = 196/280 (70%), Gaps = 0/280 (0%)

Query  13   AGRVGISFEFFPPKTAQGVQNLYDRMDRMHSLGPSFIDITWGAGGRLSDLTCEMVNVAQS  72
             G+  ISFEFFPPKT  G +NL++R+DRM ++GP F+ +TWGAGG   D T  + +V Q 
Sbjct  8    EGKFFISFEFFPPKTENGERNLWERIDRMSAVGPLFVSVTWGAGGSTRDRTSSIASVIQQ  67

Query  73   VYGLETCMHLTCTDMPLEKVNAALSAAYKAGCTNILALRGDPPRDKEAWEATEGGLRYAK  132
              GLE CMHLTCTDM  E+++ AL  A   G  NILALRGDPP+  + WE  EGG +YA 
Sbjct  68   DTGLEACMHLTCTDMSKEELDDALEDAKALGIRNILALRGDPPKGTDDWERPEGGFKYAL  127

Query  133  DLVKYIREKFGNHFDIGVGGYPEGADDNPDVDQLIDHLKEKVDAGSSFVITQMFYDVDNF  192
            DLV+ IR+++G++FDIGV  YPEG  +       + +LKEKVDAG+ F+ITQ+F+DVDNF
Sbjct  128  DLVRLIRQEYGDYFDIGVAAYPEGHPEAKSWQADLKYLKEKVDAGADFIITQLFFDVDNF  187

Query  193  IEWVKKCRAKGITVPIIPGIMPISTYAAFIRRANWTKARIPPDWLEALEPVKNDDAAVKE  252
            + +V + RA GI +PIIPGIMPI++Y +  R A  +   IP + ++ LEP+K+DD AVK 
Sbjct  188  LRFVDRVRAAGIDIPIIPGIMPITSYKSLKRIAKLSGVSIPQELIDRLEPIKDDDEAVKS  247

Query  253  IGKRLVADMCRRLLAAGINHLHFYTMNLAQATQAVLEELK  292
            IG  L  +MC++LLA G+  LHFYT+N  +AT  +LE L 
Sbjct  248  IGIELAVEMCKKLLAEGVPGLHFYTLNREEATLEILENLG  287



Lambda      K        H        a         alpha
   0.320    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 726292008


Query= TCONS_00018111

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396687 pfam02219, MTHFR, Methylenetetrahydrofolate reductase....  408     1e-140


>CDD:396687 pfam02219, MTHFR, Methylenetetrahydrofolate reductase.  This 
family includes the 5,10-methylenetetrahydrofolate reductase 
EC:1.7.99.5 from bacteria and methylenetetrahydrofolate reductase 
EC: 1.5.1.20 from eukaryotes. The structure for this 
domain is known to be a TIM barrel.
Length=287

 Score = 408 bits (1051),  Expect = 1e-140, Method: Composition-based stats.
 Identities = 146/280 (52%), Positives = 196/280 (70%), Gaps = 0/280 (0%)

Query  13   AGRVGISFEFFPPKTAQGVQNLYDRMDRMHSLGPSFIDITWGAGGRLSDLTCEMVNVAQS  72
             G+  ISFEFFPPKT  G +NL++R+DRM ++GP F+ +TWGAGG   D T  + +V Q 
Sbjct  8    EGKFFISFEFFPPKTENGERNLWERIDRMSAVGPLFVSVTWGAGGSTRDRTSSIASVIQQ  67

Query  73   VYGLETCMHLTCTDMPLEKVNAALSAAYKAGCTNILALRGDPPRDKEAWEATEGGLRYAK  132
              GLE CMHLTCTDM  E+++ AL  A   G  NILALRGDPP+  + WE  EGG +YA 
Sbjct  68   DTGLEACMHLTCTDMSKEELDDALEDAKALGIRNILALRGDPPKGTDDWERPEGGFKYAL  127

Query  133  DLVKYIREKFGNHFDIGVGGYPEGADDNPDVDQLIDHLKEKVDAGSSFVITQMFYDVDNF  192
            DLV+ IR+++G++FDIGV  YPEG  +       + +LKEKVDAG+ F+ITQ+F+DVDNF
Sbjct  128  DLVRLIRQEYGDYFDIGVAAYPEGHPEAKSWQADLKYLKEKVDAGADFIITQLFFDVDNF  187

Query  193  IEWVKKCRAKGITVPIIPGIMPISTYAAFIRRANWTKARIPPDWLEALEPVKNDDAAVKE  252
            + +V + RA GI +PIIPGIMPI++Y +  R A  +   IP + ++ LEP+K+DD AVK 
Sbjct  188  LRFVDRVRAAGIDIPIIPGIMPITSYKSLKRIAKLSGVSIPQELIDRLEPIKDDDEAVKS  247

Query  253  IGKRLVADMCRRLLAAGINHLHFYTMNLAQATQAVLEELK  292
            IG  L  +MC++LLA G+  LHFYT+N  +AT  +LE L 
Sbjct  248  IGIELAVEMCKKLLAEGVPGLHFYTLNREEATLEILENLG  287



Lambda      K        H        a         alpha
   0.318    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 781585844


Query= TCONS_00012128

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00018112

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396687 pfam02219, MTHFR, Methylenetetrahydrofolate reductase....  408     1e-140


>CDD:396687 pfam02219, MTHFR, Methylenetetrahydrofolate reductase.  This 
family includes the 5,10-methylenetetrahydrofolate reductase 
EC:1.7.99.5 from bacteria and methylenetetrahydrofolate reductase 
EC: 1.5.1.20 from eukaryotes. The structure for this 
domain is known to be a TIM barrel.
Length=287

 Score = 408 bits (1051),  Expect = 1e-140, Method: Composition-based stats.
 Identities = 146/280 (52%), Positives = 196/280 (70%), Gaps = 0/280 (0%)

Query  13   AGRVGISFEFFPPKTAQGVQNLYDRMDRMHSLGPSFIDITWGAGGRLSDLTCEMVNVAQS  72
             G+  ISFEFFPPKT  G +NL++R+DRM ++GP F+ +TWGAGG   D T  + +V Q 
Sbjct  8    EGKFFISFEFFPPKTENGERNLWERIDRMSAVGPLFVSVTWGAGGSTRDRTSSIASVIQQ  67

Query  73   VYGLETCMHLTCTDMPLEKVNAALSAAYKAGCTNILALRGDPPRDKEAWEATEGGLRYAK  132
              GLE CMHLTCTDM  E+++ AL  A   G  NILALRGDPP+  + WE  EGG +YA 
Sbjct  68   DTGLEACMHLTCTDMSKEELDDALEDAKALGIRNILALRGDPPKGTDDWERPEGGFKYAL  127

Query  133  DLVKYIREKFGNHFDIGVGGYPEGADDNPDVDQLIDHLKEKVDAGSSFVITQMFYDVDNF  192
            DLV+ IR+++G++FDIGV  YPEG  +       + +LKEKVDAG+ F+ITQ+F+DVDNF
Sbjct  128  DLVRLIRQEYGDYFDIGVAAYPEGHPEAKSWQADLKYLKEKVDAGADFIITQLFFDVDNF  187

Query  193  IEWVKKCRAKGITVPIIPGIMPISTYAAFIRRANWTKARIPPDWLEALEPVKNDDAAVKE  252
            + +V + RA GI +PIIPGIMPI++Y +  R A  +   IP + ++ LEP+K+DD AVK 
Sbjct  188  LRFVDRVRAAGIDIPIIPGIMPITSYKSLKRIAKLSGVSIPQELIDRLEPIKDDDEAVKS  247

Query  253  IGKRLVADMCRRLLAAGINHLHFYTMNLAQATQAVLEELK  292
            IG  L  +MC++LLA G+  LHFYT+N  +AT  +LE L 
Sbjct  248  IGIELAVEMCKKLLAEGVPGLHFYTLNREEATLEILENLG  287



Lambda      K        H        a         alpha
   0.318    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 781585844


Query= TCONS_00012130

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396687 pfam02219, MTHFR, Methylenetetrahydrofolate reductase....  408     1e-140


>CDD:396687 pfam02219, MTHFR, Methylenetetrahydrofolate reductase.  This 
family includes the 5,10-methylenetetrahydrofolate reductase 
EC:1.7.99.5 from bacteria and methylenetetrahydrofolate reductase 
EC: 1.5.1.20 from eukaryotes. The structure for this 
domain is known to be a TIM barrel.
Length=287

 Score = 408 bits (1051),  Expect = 1e-140, Method: Composition-based stats.
 Identities = 146/280 (52%), Positives = 196/280 (70%), Gaps = 0/280 (0%)

Query  13   AGRVGISFEFFPPKTAQGVQNLYDRMDRMHSLGPSFIDITWGAGGRLSDLTCEMVNVAQS  72
             G+  ISFEFFPPKT  G +NL++R+DRM ++GP F+ +TWGAGG   D T  + +V Q 
Sbjct  8    EGKFFISFEFFPPKTENGERNLWERIDRMSAVGPLFVSVTWGAGGSTRDRTSSIASVIQQ  67

Query  73   VYGLETCMHLTCTDMPLEKVNAALSAAYKAGCTNILALRGDPPRDKEAWEATEGGLRYAK  132
              GLE CMHLTCTDM  E+++ AL  A   G  NILALRGDPP+  + WE  EGG +YA 
Sbjct  68   DTGLEACMHLTCTDMSKEELDDALEDAKALGIRNILALRGDPPKGTDDWERPEGGFKYAL  127

Query  133  DLVKYIREKFGNHFDIGVGGYPEGADDNPDVDQLIDHLKEKVDAGSSFVITQMFYDVDNF  192
            DLV+ IR+++G++FDIGV  YPEG  +       + +LKEKVDAG+ F+ITQ+F+DVDNF
Sbjct  128  DLVRLIRQEYGDYFDIGVAAYPEGHPEAKSWQADLKYLKEKVDAGADFIITQLFFDVDNF  187

Query  193  IEWVKKCRAKGITVPIIPGIMPISTYAAFIRRANWTKARIPPDWLEALEPVKNDDAAVKE  252
            + +V + RA GI +PIIPGIMPI++Y +  R A  +   IP + ++ LEP+K+DD AVK 
Sbjct  188  LRFVDRVRAAGIDIPIIPGIMPITSYKSLKRIAKLSGVSIPQELIDRLEPIKDDDEAVKS  247

Query  253  IGKRLVADMCRRLLAAGINHLHFYTMNLAQATQAVLEELK  292
            IG  L  +MC++LLA G+  LHFYT+N  +AT  +LE L 
Sbjct  248  IGIELAVEMCKKLLAEGVPGLHFYTLNREEATLEILENLG  287



Lambda      K        H        a         alpha
   0.318    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 781585844


Query= TCONS_00012131

Length=908


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1167072882


Query= TCONS_00012132

Length=908


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1167072882


Query= TCONS_00018113

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431217 pfam10332, DUF2418, Protein of unknown function (DUF24...  149     1e-44


>CDD:431217 pfam10332, DUF2418, Protein of unknown function (DUF2418).  This 
is a conserved 100 residue central region of a family of 
proteins found in fungi. It carries a characteristic EYD sequence 
motif. The function is not known.
Length=96

 Score = 149 bits (380),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 70/105 (67%), Gaps = 9/105 (9%)

Query  192  RDVWELAVWDPLPICLRLFCLFSPGHVLVYWVFLPTQLSDPRPSVTIVTTIFITTLLSVQ  251
            RDVWEL VWDP P  LRLFCLFSP HVL+ W+FL         SVT  TT+ +  LLSVQ
Sbjct  1    RDVWELRVWDPSPFSLRLFCLFSPIHVLLLWLFL---------SVTSFTTLLLVVLLSVQ  51

Query  252  MSFLSSSFTQQAKDSMVVHKEVLNEYDTKFVHPRTQPVMRDVGTQ  296
            +  L S F Q  KD  ++HKEV++EY+TKFV PR  P+ RDV T 
Sbjct  52   LYLLISRFEQLIKDKQIIHKEVMHEYNTKFVKPRLNPLKRDVATD  96



Lambda      K        H        a         alpha
   0.320    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 590476040


Query= TCONS_00012133

Length=119
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460409 pfam01990, ATP-synt_F, ATP synthase (F/14-kDa) subunit...  114     4e-35


>CDD:460409 pfam01990, ATP-synt_F, ATP synthase (F/14-kDa) subunit.  This 
family includes 14-kDa subunit from vATPases, which is in the 
peripheral catalytic part of the complex. The family also 
includes archaebacterial ATP synthase subunit F.
Length=91

 Score = 114 bits (287),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 16/106 (15%)

Query  14   LAVIGDEDSVTGLLLAGIGHVTDGPDAQRNFLVVDSKTETSAIEKAFQNFTQERKDIAVL  73
            +AVIGDED+VTG  LAGIG V                T+    E+A +    +R+DI ++
Sbjct  1    IAVIGDEDTVTGFRLAGIGGVVV--------------TDPEEAEEALEELL-KREDIGII  45

Query  74   LINQHVAERIRHSVDSFAD-PFPAVLEIPSKDHPYDPEKDSVLKRV  118
            LI +H+AE+IR  +D + +   PA++EIPSKD PY P KDS+ KRV
Sbjct  46   LITEHLAEKIRELIDRYKERVLPAIIEIPSKDGPYGPGKDSIRKRV  91



Lambda      K        H        a         alpha
   0.317    0.133    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00018115

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 187     9e-54


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 187 bits (476),  Expect = 9e-54, Method: Composition-based stats.
 Identities = 115/442 (26%), Positives = 162/442 (37%), Gaps = 75/442 (17%)

Query  72   VQGRGDSEALW-FENKTWTYRQLKDLVDRLAALLHSRDIKTGDFVAVFNTNSPEMVVSIY  130
                 D  AL   E +  TYR+L +  +RLAA L +  +  GD VA+   NSPE VV+  
Sbjct  5    AARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFL  64

Query  131  ALAKLGAVAALINNNLRDDTFMHCLNVSGSKFIISTPDL---------------------  169
            A  K GAV   +N  L  +   + L  SG+K +I+   L                     
Sbjct  65   ACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVL  124

Query  170  -------------SQFQYSPTGLIPAKRSVRDLCVLIYTSGTTGNPKACAI--RNMMNMV  214
                                    P      DL  +IYTSGTTG PK   +  RN++  V
Sbjct  125  DRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANV  184

Query  215  TSNPLSTDVRNPAKYYPLRTYSSLPLFHGTAYFTGLCYSVGNAGTLCLRRKFSA---SQF  271
             S       R        R  S+LPLFH      GL   +    T+ L   F A   +  
Sbjct  185  LSI-KRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAAL  243

Query  272  WKDVHDSKATRILYIGELCRYLLATPPSPYDQDHA---CIVASGNGLRGEIWERFRQRFN  328
             + +   K T +  +  L   LL     P     +    +++ G  L  E+  RFR+ F 
Sbjct  244  LELIERYKVTVLYGVPTLLNMLLEAGA-PKRALLSSLRLVLSGGAPLPPELARRFRELFG  302

Query  329  VPEIREFYRSTE---GVAKFDNHGVGAWGAGKIGFSGPIRRFLEEDVFIVKYDPDTEMPY  385
               +   Y  TE    V             G +G   P+              P TE+  
Sbjct  303  GA-LVNGYGLTETTGVVTTPLPLDEDLRSLGSVGR--PL--------------PGTEVKI  345

Query  386  RDPKTGFCVKAKLGEEGEAIGRVRDRTLLTEYLYNEEATEKKLLRDVFVKGDLYQRTGDL  445
             D +TG  V    GE GE    VR   ++  YL + E T +      F +   Y RTGDL
Sbjct  346  VDDETGEPVPP--GEPGELC--VRGPGVMKGYLNDPELTAE-----AFDEDGWY-RTGDL  395

Query  446  LVQDSSGWVKFQDRVGDTFRWK  467
              +D  G+++   R  D  +  
Sbjct  396  GRRDEDGYLEIVGRKKDQIKLG  417



Lambda      K        H        a         alpha
   0.319    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 762158280


Query= TCONS_00018116

Length=578
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 192     4e-56


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 192 bits (491),  Expect = 4e-56, Method: Composition-based stats.
 Identities = 120/451 (27%), Positives = 171/451 (38%), Gaps = 61/451 (14%)

Query  72   VQGRGDSEALW-FENKTWTYRQLKDLVDRLAALLHSRDIKTGDFVAVFNTNSPEMVVSIY  130
                 D  AL   E +  TYR+L +  +RLAA L +  +  GD VA+   NSPE VV+  
Sbjct  5    AARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFL  64

Query  131  ALAKLGAVAALINNNLRDDTFMHCLNVSGSKFIISTPDLSQFVCVDLPHIALNLGSFDGI  190
            A  K GAV   +N  L  +   + L  SG+K +I           D   +   L +   +
Sbjct  65   ACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI---------TDDALKLEELLEALGKL  115

Query  191  SVGAIELVTAAD-----------LQQYSPTGLIPAKRSVRDLCVLIYTSGTTGNPKACAI  239
             V  + LV   D            +        P      DL  +IYTSGTTG PK   +
Sbjct  116  EVVKLVLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVML  175

Query  240  --RNMMNMVTSNPLSTDVRNPAKYYPLRTYSSLPLFHGTAYFTGLCYSVGNAGTLCLRRK  297
              RN++  V S       R        R  S+LPLFH      GL   +    T+ L   
Sbjct  176  THRNLVANVLSI-KRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPG  234

Query  298  FSA---SQFWKDVHDSKATRILYIGELCRYLLATPPSPYDQDHA---CIVASGNGLRGEI  351
            F A   +   + +   K T +  +  L   LL     P     +    +++ G  L  E+
Sbjct  235  FPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGA-PKRALLSSLRLVLSGGAPLPPEL  293

Query  352  WERFRQRFNVPEIREFYRSTE---GVAKFDNHGVGAWGAGKIGFSGPIRRFLEEDVFIVK  408
              RFR+ F    +   Y  TE    V             G +G   P+            
Sbjct  294  ARRFRELFGGA-LVNGYGLTETTGVVTTPLPLDEDLRSLGSVGR--PL------------  338

Query  409  YDPDTEMPYRDPKTGFCVKAKLGEEGEAIGRVRDRTLLTEYLYNEEATEKKLLRDVFVKG  468
              P TE+   D +TG  V    GE GE    VR   ++  YL + E T +      F + 
Sbjct  339  --PGTEVKIVDDETGEPVPP--GEPGELC--VRGPGVMKGYLNDPELTAE-----AFDED  387

Query  469  DLYQRTGDLLVQDSSGWVKFQDRVGDTFRWK  499
              Y RTGDL  +D  G+++   R  D  +  
Sbjct  388  GWY-RTGDLGRRDEDGYLEIVGRKKDQIKLG  417



Lambda      K        H        a         alpha
   0.320    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 726292008


Query= TCONS_00012134

Length=634
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 194     4e-56


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 194 bits (494),  Expect = 4e-56, Method: Composition-based stats.
 Identities = 120/451 (27%), Positives = 171/451 (38%), Gaps = 61/451 (14%)

Query  72   VQGRGDSEALW-FENKTWTYRQLKDLVDRLAALLHSRDIKTGDFVAVFNTNSPEMVVSIY  130
                 D  AL   E +  TYR+L +  +RLAA L +  +  GD VA+   NSPE VV+  
Sbjct  5    AARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFL  64

Query  131  ALAKLGAVAALINNNLRDDTFMHCLNVSGSKFIISTPDLSQFVCVDLPHIALNLGSFDGI  190
            A  K GAV   +N  L  +   + L  SG+K +I           D   +   L +   +
Sbjct  65   ACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI---------TDDALKLEELLEALGKL  115

Query  191  SVGAIELVTAAD-----------LQQYSPTGLIPAKRSVRDLCVLIYTSGTTGNPKACAI  239
             V  + LV   D            +        P      DL  +IYTSGTTG PK   +
Sbjct  116  EVVKLVLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVML  175

Query  240  --RNMMNMVTSNPLSTDVRNPAKYYPLRTYSSLPLFHGTAYFTGLCYSVGNAGTLCLRRK  297
              RN++  V S       R        R  S+LPLFH      GL   +    T+ L   
Sbjct  176  THRNLVANVLSI-KRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPG  234

Query  298  FSA---SQFWKDVHDSKATRILYIGELCRYLLATPPSPYDQDHA---CIVASGNGLRGEI  351
            F A   +   + +   K T +  +  L   LL     P     +    +++ G  L  E+
Sbjct  235  FPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGA-PKRALLSSLRLVLSGGAPLPPEL  293

Query  352  WERFRQRFNVPEIREFYRSTE---GVAKFDNHGVGAWGAGKIGFSGPIRRFLEEDVFIVK  408
              RFR+ F    +   Y  TE    V             G +G   P+            
Sbjct  294  ARRFRELFGGA-LVNGYGLTETTGVVTTPLPLDEDLRSLGSVGR--PL------------  338

Query  409  YDPDTEMPYRDPKTGFCVKAKLGEEGEAIGRVRDRTLLTEYLYNEEATEKKLLRDVFVKG  468
              P TE+   D +TG  V    GE GE    VR   ++  YL + E T +      F + 
Sbjct  339  --PGTEVKIVDDETGEPVPP--GEPGELC--VRGPGVMKGYLNDPELTAE-----AFDED  387

Query  469  DLYQRTGDLLVQDSSGWVKFQDRVGDTFRWK  499
              Y RTGDL  +D  G+++   R  D  +  
Sbjct  388  GWY-RTGDLGRRDEDGYLEIVGRKKDQIKLG  417



Lambda      K        H        a         alpha
   0.320    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 797861390


Query= TCONS_00012135

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 142     4e-38


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 142 bits (360),  Expect = 4e-38, Method: Composition-based stats.
 Identities = 99/397 (25%), Positives = 143/397 (36%), Gaps = 60/397 (15%)

Query  1    MVVSIYALAKLGAVAALINNNLRDDTFMHCLNVSGSKFIISTPDLSQFVCVDLPHIALNL  60
             VV+  A  K GAV   +N  L  +   + L  SG+K +I           D   +   L
Sbjct  59   WVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI---------TDDALKLEELL  109

Query  61   GSFDGISVGAIELVTAAD-----------LQQYSPTGLIPAKRSVRDLCVLIYTSGTTGN  109
             +   + V  + LV   D            +        P      DL  +IYTSGTTG 
Sbjct  110  EALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGK  169

Query  110  PKACAI--RNMMNMVTSNPLSTDVRNPAKYYPLRTYSSLPLFHGTAYFTGLCYSVGNAGT  167
            PK   +  RN++  V S       R        R  S+LPLFH      GL   +    T
Sbjct  170  PKGVMLTHRNLVANVLSI-KRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGAT  228

Query  168  LCLRRKFSA---SQFWKDVHDSKATRILYIGELCRYLLATPPSPYDQDHA---CIVASGN  221
            + L   F A   +   + +   K T +  +  L   LL     P     +    +++ G 
Sbjct  229  VVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGA-PKRALLSSLRLVLSGGA  287

Query  222  GLRGEIWERFRQRFNVPEIREFYRSTE---GVAKFDNHGVGAWGAGKIGFSGPIRRFLEE  278
             L  E+  RFR+ F    +   Y  TE    V             G +G   P+      
Sbjct  288  PLPPELARRFRELFGGA-LVNGYGLTETTGVVTTPLPLDEDLRSLGSVGR--PL------  338

Query  279  DVFIVKYDPDTEMPYRDPKTGFCVKAKLGEEGEAIGRVRDRTLLTEYLYNEEATEKKLLR  338
                    P TE+   D +TG  V    GE GE    VR   ++  YL + E T +    
Sbjct  339  --------PGTEVKIVDDETGEPVPP--GEPGELC--VRGPGVMKGYLNDPELTAE----  382

Query  339  DVFVKGDLYQRTGDLLVQDSSGWVKFQDRVGDTFRWK  375
              F +   Y RTGDL  +D  G+++   R  D  +  
Sbjct  383  -AFDEDGWY-RTGDLGRRDEDGYLEIVGRKKDQIKLG  417



Lambda      K        H        a         alpha
   0.320    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 634393654


Query= TCONS_00012136

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 122     3e-31


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 122 bits (309),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 131/369 (36%), Gaps = 60/369 (16%)

Query  2    HCLNVSGSKFIISTPDLSQFVCVDLPHIALNLGSFDGISVGAIELVTAAD----------  51
            + L  SG+K +I           D   +   L +   + V  + LV   D          
Sbjct  87   YILEDSGAKVLI---------TDDALKLEELLEALGKLEVVKLVLVLDRDPVLKEEPLPE  137

Query  52   -LQQYSPTGLIPAKRSVRDLCVLIYTSGTTGNPKACAI--RNMMNMVTSNPLSTDVRNPA  108
              +        P      DL  +IYTSGTTG PK   +  RN++  V S       R   
Sbjct  138  EAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSI-KRVRPRGFG  196

Query  109  KYYPLRTYSSLPLFHGTAYFTGLCYSVGNAGTLCLRRKFSA---SQFWKDVHDSKATRIL  165
                 R  S+LPLFH      GL   +    T+ L   F A   +   + +   K T + 
Sbjct  197  LGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLELIERYKVTVLY  256

Query  166  YIGELCRYLLATPPSPYDQDHA---CIVASGNGLRGEIWERFRQRFNVPEIREFYRSTE-  221
             +  L   LL     P     +    +++ G  L  E+  RFR+ F    +   Y  TE 
Sbjct  257  GVPTLLNMLLEAGA-PKRALLSSLRLVLSGGAPLPPELARRFRELFGGA-LVNGYGLTET  314

Query  222  --GVAKFDNHGVGAWGAGKIGFSGPIRRFLEEDVFIVKYDPDTEMPYRDPKTGFCVKAKL  279
               V             G +G   P+              P TE+   D +TG  V    
Sbjct  315  TGVVTTPLPLDEDLRSLGSVGR--PL--------------PGTEVKIVDDETGEPVPP--  356

Query  280  GEEGEAIGRVRDRTLLTEYLYNEEATEKKLLRDVFVKGDLYQRTGDLLVQDSSGWVKFQD  339
            GE GE    VR   ++  YL + E T +      F +   Y RTGDL  +D  G+++   
Sbjct  357  GEPGELC--VRGPGVMKGYLNDPELTAE-----AFDEDGWY-RTGDLGRRDEDGYLEIVG  408

Query  340  RVGDTFRWK  348
            R  D  +  
Sbjct  409  RKKDQIKLG  417



Lambda      K        H        a         alpha
   0.320    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593513872


Query= TCONS_00018117

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 192     6e-56


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 192 bits (490),  Expect = 6e-56, Method: Composition-based stats.
 Identities = 120/451 (27%), Positives = 171/451 (38%), Gaps = 61/451 (14%)

Query  72   VQGRGDSEALW-FENKTWTYRQLKDLVDRLAALLHSRDIKTGDFVAVFNTNSPEMVVSIY  130
                 D  AL   E +  TYR+L +  +RLAA L +  +  GD VA+   NSPE VV+  
Sbjct  5    AARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFL  64

Query  131  ALAKLGAVAALINNNLRGDTFMHCLNVSGSKFIISTPDLSQFVCVDLPHIALNLGSFDGI  190
            A  K GAV   +N  L  +   + L  SG+K +I           D   +   L +   +
Sbjct  65   ACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI---------TDDALKLEELLEALGKL  115

Query  191  SVGAIELVTAAD-----------LQQYSPTGLIPAKRSVRDLCVLIYTSGTTGNPKACAI  239
             V  + LV   D            +        P      DL  +IYTSGTTG PK   +
Sbjct  116  EVVKLVLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVML  175

Query  240  --RNMMNMVTSNPLSTDVRNPAKYYPLRTYSSLPLFHGTAYFTGLCYSVGNAGTLCLRRK  297
              RN++  V S       R        R  S+LPLFH      GL   +    T+ L   
Sbjct  176  THRNLVANVLSI-KRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPG  234

Query  298  FSA---SQFWKDVHDSKATRILYIGELCRYLLATPPSPYDQDHA---CIVASGNGLRGEI  351
            F A   +   + +   K T +  +  L   LL     P     +    +++ G  L  E+
Sbjct  235  FPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGA-PKRALLSSLRLVLSGGAPLPPEL  293

Query  352  WERFRQRFNVPEIREFYRSTE---GVAKFDNHGVGAWGAGKIGFSGPIRRFLEEDVFIVK  408
              RFR+ F    +   Y  TE    V             G +G   P+            
Sbjct  294  ARRFRELFGGA-LVNGYGLTETTGVVTTPLPLDEDLRSLGSVGR--PL------------  338

Query  409  YDPDTEMPYRDPKTGFCVKAKLGEEGEAIGRVRDRTLLTEYLYNEEATEKKLLRDVFVKG  468
              P TE+   D +TG  V    GE GE    VR   ++  YL + E T +      F + 
Sbjct  339  --PGTEVKIVDDETGEPVPP--GEPGELC--VRGPGVMKGYLNDPELTAE-----AFDED  387

Query  469  DLYQRTGDLLVQDSSGWVKFQDRVGDTFRWK  499
              Y RTGDL  +D  G+++   R  D  +  
Sbjct  388  GWY-RTGDLGRRDEDGYLEIVGRKKDQIKLG  417



Lambda      K        H        a         alpha
   0.320    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 741236288


Query= TCONS_00012137

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.124    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00018119

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.124    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00018120

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like. Autopha...  111     3e-31


>CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like.  Autophagy is 
a major survival survival mechanism in which eukaryotes recycle 
cellular nutrients during stress conditions. Atg22, Avt3 
and Avt4 are partially redundant vacuolar effluxes, which mediate 
the efflux of leucine and other amino acids resulting 
from autophagy. This family also includes other transporter 
proteins.
Length=479

 Score = 111 bits (279),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 32/79 (41%), Positives = 45/79 (57%), Gaps = 0/79 (0%)

Query  1    MFNAIAVGIILLDGWGMIGIWAQRFGFHHAWEIWLYQTFYGLFVCPWYSYSQIMISEVTP  60
               A  V   L+  +G++GI   + G  + WE W+ Q FYGL +    SYS+ + SE+ P
Sbjct  353  TLIACIVLFELIPLYGLLGIILGKIGLKNPWEFWVLQAFYGLVLGGLRSYSRSLYSELIP  412

Query  61   RGHEFLFFSLFSIIGKTSS  79
            RG E  FFSL++I  K SS
Sbjct  413  RGKEAQFFSLYAITDKGSS  431



Lambda      K        H        a         alpha
   0.333    0.146    0.524    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00012138

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.124    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00012139

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like. Autopha...  321     2e-108


>CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like.  Autophagy is 
a major survival survival mechanism in which eukaryotes recycle 
cellular nutrients during stress conditions. Atg22, Avt3 
and Avt4 are partially redundant vacuolar effluxes, which mediate 
the efflux of leucine and other amino acids resulting 
from autophagy. This family also includes other transporter 
proteins.
Length=479

 Score = 321 bits (826),  Expect = 2e-108, Method: Composition-based stats.
 Identities = 107/308 (35%), Positives = 169/308 (55%), Gaps = 8/308 (3%)

Query  1    MKDRADAYVAGRL--SREEYDNADTMARSRLANVAFYVQSVAEIVILAVIVGIMFGLRVD  58
            ++  A+A   G    + EEYD+ +   R+R+++  F +  +  I++  + + I++ L   
Sbjct  161  LRAAAEALQDGESAITAEEYDSLELQLRTRISSRGFGIGYIGGILVQIISIIIVYALGST  220

Query  59   ESQANNNWGLSVLIAFASGVWLLVSLPWFVLEKRRPGQ--DPGRNIIVAGLRQLYHAGTE  116
             S  NN W L + I FA   W++ ++PW +  + RPG     G N ++ G +QL     +
Sbjct  221  AS--NNTWALRLAITFAGCWWIIFTIPWALWLRPRPGPPLPSGLNYLIYGWKQLGRTLKQ  278

Query  117  VWKLKQSLLYLIGYFLLGDSLNTTVTVIATLQNSIVAYNTLELTYLLIVGIAAQALGIYA  176
              KLK +LL+L+ +FLL D + T  +       + +  +T +LT L IV + A  LG + 
Sbjct  279  ARKLKDALLFLVAWFLLSDGIATVSSTAVLFAKTELGMSTSQLTLLNIVAMIAAVLGAFL  338

Query  177  FWFIQRRYNLGTKAMFNAIAVGIILLDGWGMIGIWAQRFGFHHAWEIWLYQTFYGLFVCP  236
            + F+ RR+NL TK    A  V   L+  +G++GI   + G  + WE W+ Q FYGL +  
Sbjct  339  WPFVSRRFNLKTKQTLIACIVLFELIPLYGLLGIILGKIGLKNPWEFWVLQAFYGLVLGG  398

Query  237  WYSYSQIMISEVTPRGHEFLFFSLFSIIGKTSSFIGPLVSSAIIDASPSGNVSTPFYFLF  296
              SYS+ + SE+ PRG E  FFSL++I  K SS+IGPL+  AI D   +GN+ +PF FL 
Sbjct  399  LRSYSRSLYSELIPRGKEAQFFSLYAITDKGSSWIGPLIVGAIQDR--TGNIRSPFVFLA  456

Query  297  ALSVVSFV  304
             L VV   
Sbjct  457  ILLVVPLP  464



Lambda      K        H        a         alpha
   0.327    0.141    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00012140

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like. Autopha...  120     1e-33


>CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like.  Autophagy is 
a major survival survival mechanism in which eukaryotes recycle 
cellular nutrients during stress conditions. Atg22, Avt3 
and Avt4 are partially redundant vacuolar effluxes, which mediate 
the efflux of leucine and other amino acids resulting 
from autophagy. This family also includes other transporter 
proteins.
Length=479

 Score = 120 bits (303),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 39/136 (29%), Positives = 72/136 (53%), Gaps = 6/136 (4%)

Query  1    MKDRADAYVAGRL--SREEYDNADTMARSRLANVAFYVQSVAEIVILAVIVGIMFGLRVD  58
            ++  A+A   G    + EEYD+ +   R+R+++  F +  +  I++  + + I++ L   
Sbjct  161  LRAAAEALQDGESAITAEEYDSLELQLRTRISSRGFGIGYIGGILVQIISIIIVYALGST  220

Query  59   ESQANNNWGLSVLIAFASGVWLLVSLPWFVLEKRRPGQ--DPGRNIIVAGLRQLYHAGTE  116
             S  NN W L + I FA   W++ ++PW +  + RPG     G N ++ G +QL     +
Sbjct  221  AS--NNTWALRLAITFAGCWWIIFTIPWALWLRPRPGPPLPSGLNYLIYGWKQLGRTLKQ  278

Query  117  VWKLKQSLLYLIGKFV  132
              KLK +LL+L+  F+
Sbjct  279  ARKLKDALLFLVAWFL  294



Lambda      K        H        a         alpha
   0.326    0.139    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0797    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00012141

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.124    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00018122

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00018121

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00012144

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00012143

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00018124

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00018125

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00018123

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00018126

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00012145

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00012146

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00012149

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00012148

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00012147

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00012150

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00012151

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00012153

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00012152

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00018127

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00012154

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00018128

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00012155

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00012156

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00012157

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00018129

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            73.2    5e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 73.2 bits (180),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 62/336 (18%), Positives = 122/336 (36%), Gaps = 57/336 (17%)

Query  6    MSLFNLLSSMSSATVAPAL-EAIADDLKIRSQTLLIMSLSVYLLGSAIVPLVSSPLSEMY  64
            + L   L+++  + + PAL   +A+DL I S T + + L+++ LG A+   ++  LS+ +
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGI-SPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  65   GRVIILSASNI-----------------LIAYRFLAGLGGAGPFGIGSGMNSDLFPPQDR  107
            GR  +L    +                 L+  R L GLG    F     + +D FPP++R
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  108  WKAMAVFTLAPLIGTAIGPITGGFLVQYESWPWCFYVVSIAAAVVQLAAFLLLRETYGPV  167
             +A+ + +    +G A+GP+ GG L     W   F +++I + +  +   L         
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKR  179

Query  168  LLRRKCARMRKTTGNPDLYTEYDGMSSTALLHKNLIRPFRLLATQPIIQVLSLYLAYLNG  227
                +                            +LI  ++ L   P++    L    L G
Sbjct  180  PKPAE------------------------EARLSLIVAWKALLRDPVL--WLLLALLLFG  213

Query  228  ILYLMVATFPDVWTTIYHESESIGSLNYLSLTVGMTIAMQLGTRIAGRVYQRLCANNGGV  287
              +  + T+  ++  +   S  +  L      +   I   L  R++ R+           
Sbjct  214  FAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRL-----------  262

Query  288  ARPEFRLPILCAGACIVPIGLFWYGWSARQSIHWIM  323
                 RL +      +  +GL     +       + 
Sbjct  263  -GRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLA  297



Lambda      K        H        a         alpha
   0.326    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00012158

Length=246


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00012159

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            73.2    5e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 73.2 bits (180),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 62/336 (18%), Positives = 122/336 (36%), Gaps = 57/336 (17%)

Query  6    MSLFNLLSSMSSATVAPAL-EAIADDLKIRSQTLLIMSLSVYLLGSAIVPLVSSPLSEMY  64
            + L   L+++  + + PAL   +A+DL I S T + + L+++ LG A+   ++  LS+ +
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGI-SPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  65   GRVIILSASNI-----------------LIAYRFLAGLGGAGPFGIGSGMNSDLFPPQDR  107
            GR  +L    +                 L+  R L GLG    F     + +D FPP++R
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  108  WKAMAVFTLAPLIGTAIGPITGGFLVQYESWPWCFYVVSIAAAVVQLAAFLLLRETYGPV  167
             +A+ + +    +G A+GP+ GG L     W   F +++I + +  +   L         
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKR  179

Query  168  LLRRKCARMRKTTGNPDLYTEYDGMSSTALLHKNLIRPFRLLATQPIIQVLSLYLAYLNG  227
                +                            +LI  ++ L   P++    L    L G
Sbjct  180  PKPAE------------------------EARLSLIVAWKALLRDPVL--WLLLALLLFG  213

Query  228  ILYLMVATFPDVWTTIYHESESIGSLNYLSLTVGMTIAMQLGTRIAGRVYQRLCANNGGV  287
              +  + T+  ++  +   S  +  L      +   I   L  R++ R+           
Sbjct  214  FAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRL-----------  262

Query  288  ARPEFRLPILCAGACIVPIGLFWYGWSARQSIHWIM  323
                 RL +      +  +GL     +       + 
Sbjct  263  -GRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLA  297



Lambda      K        H        a         alpha
   0.326    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00012160

Length=246


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00012161

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            66.3    1e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 66.3 bits (162),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 44/185 (24%), Positives = 83/185 (45%), Gaps = 19/185 (10%)

Query  6    MSLFNLLSSMSSATVAPAL-EAIADDLKIRSQTLLIMSLSVYLLGSAIVPLVSSPLSEMY  64
            + L   L+++  + + PAL   +A+DL I S T + + L+++ LG A+   ++  LS+ +
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGI-SPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  65   GRVIILSASNI-----------------LIAYRFLAGLGGAGPFGIGSGMNSDLFPPQDR  107
            GR  +L    +                 L+  R L GLG    F     + +D FPP++R
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  108  WKAMAVFTLAPLIGTAIGPITGGFLVQYESWPWCFYVVSIAAAVVQLAAFLLLRETYGPV  167
             +A+ + +    +G A+GP+ GG L     W   F +++I + +  +   L         
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKR  179

Query  168  LLRRK  172
                +
Sbjct  180  PKPAE  184



Lambda      K        H        a         alpha
   0.325    0.139    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00018130

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            69.4    2e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 69.4 bits (170),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 62/336 (18%), Positives = 122/336 (36%), Gaps = 57/336 (17%)

Query  6    MSLFNLLSSMSSATVAPAL-EAIADDLKIRSQTLLIMSLSVYLLGSAIVPLVSSPLSEMY  64
            + L   L+++  + + PAL   +A+DL I S T + + L+++ LG A+   ++  LS+ +
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGI-SPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  65   GRVIILSASNI-----------------LIAYRFLAGLGGAGPFGIGSGMNSDLFPPQDR  107
            GR  +L    +                 L+  R L GLG    F     + +D FPP++R
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  108  WKAMAVFTLAPLIGTAIGPITGGFLVQYESWPWCFYVVSIAAAVVQLAAFLLLRETYGPV  167
             +A+ + +    +G A+GP+ GG L     W   F +++I + +  +   L         
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKR  179

Query  168  LLRRKCARMRKTTGNPDLYTEYDGMSSTALLHKNLIRPFRLLATQPIIQVLSLYLAYLNG  227
                +                            +LI  ++ L   P++    L    L G
Sbjct  180  PKPAE------------------------EARLSLIVAWKALLRDPVL--WLLLALLLFG  213

Query  228  ILYLMVATFPDVWTTIYHESESIGSLNYLSLTVGMTIAMQLGTRIAGRVYQRLCANNGGV  287
              +  + T+  ++  +   S  +  L      +   I   L  R++ R+           
Sbjct  214  FAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRL-----------  262

Query  288  ARPEFRLPILCAGACIVPIGLFWYGWSARQSIHWIM  323
                 RL +      +  +GL     +       + 
Sbjct  263  -GRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLA  297



Lambda      K        H        a         alpha
   0.327    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00018131

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            75.5    1e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 75.5 bits (186),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 62/336 (18%), Positives = 122/336 (36%), Gaps = 57/336 (17%)

Query  6    MSLFNLLSSMSSATVAPAL-EAIADDLKIRSQTLLIMSLSVYLLGSAIVPLVSSPLSEMY  64
            + L   L+++  + + PAL   +A+DL I S T + + L+++ LG A+   ++  LS+ +
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGI-SPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  65   GRVIILSASNI-----------------LIAYRFLAGLGGAGPFGIGSGMNSDLFPPQDR  107
            GR  +L    +                 L+  R L GLG    F     + +D FPP++R
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  108  WKAMAVFTLAPLIGTAIGPITGGFLVQYESWPWCFYVVSIAAAVVQLAAFLLLRETYGPV  167
             +A+ + +    +G A+GP+ GG L     W   F +++I + +  +   L         
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKR  179

Query  168  LLRRKCARMRKTTGNPDLYTEYDGMSSTALLHKNLIRPFRLLATQPIIQVLSLYLAYLNG  227
                +                            +LI  ++ L   P++    L    L G
Sbjct  180  PKPAE------------------------EARLSLIVAWKALLRDPVL--WLLLALLLFG  213

Query  228  ILYLMVATFPDVWTTIYHESESIGSLNYLSLTVGMTIAMQLGTRIAGRVYQRLCANNGGV  287
              +  + T+  ++  +   S  +  L      +   I   L  R++ R+           
Sbjct  214  FAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRL-----------  262

Query  288  ARPEFRLPILCAGACIVPIGLFWYGWSARQSIHWIM  323
                 RL +      +  +GL     +       + 
Sbjct  263  -GRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLA  297



Lambda      K        H        a         alpha
   0.327    0.140    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00018132

Length=246


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00012164

Length=674
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465456 pfam17681, GCP_N_terminal, Gamma tubulin complex compo...  208     1e-62
CDD:461187 pfam04130, Spc97_Spc98, Spc97 / Spc98 family. The spin...  163     4e-46


>CDD:465456 pfam17681, GCP_N_terminal, Gamma tubulin complex component N-terminal. 
 This is the N-terminal domain found in components 
of the gamma-tubulin complex proteins (GCPs). Family members 
include spindle pole body (SBP) components such as Spc97 and 
Spc98 which function as the microtubule-organizing center 
in yeast. Furthermore, family members such as human GCP4 (Gamma-tubulin 
complex component 4) have been structurally elucidated. 
Functional studies have shown that the N-terminal domain 
defines the functional identity of GCPs, suggesting that 
all GCPs are incorporated into the helix of gamma-tubulin 
small complexes (gTURCs) via lateral interactions between their 
N-terminal domains. Thereby, they define the direct neighbors 
and position the GCPs within the helical wall of gTuRC. 
Sequence alignment of human GCPs based on the GCP4 structure 
helped delineate conserved regions in the N- and C-terminal 
domains. In addition to the conserved sequences, the N-terminal 
domains carry specific insertions of various sizes depending 
on the GCP, i.e. internal insertions or N-terminal 
extensions. These insertions may equally contribute to the function 
of individual GCPs as they have been implied in specific 
interactions with regulatory or structural proteins. For 
instance, GCP6 carries a large internal insertion phosphorylated 
by Plk4 and containing a domain of interaction with keratins, 
whereas the N-terminal extension of GCP3 interacts 
with the recruitment protein MOZART1.
Length=298

 Score = 208 bits (532),  Expect = 1e-62, Method: Composition-based stats.
 Identities = 104/340 (31%), Positives = 155/340 (46%), Gaps = 60/340 (18%)

Query  58   LEDLLFVFMGFEGRYIHYHHTFDPTAEKDRLAGPAFQLPSGLDPTLRDLTSSMLKMATHY  117
            L DLLF   G  G YI +        E D       ++P  L P+LR L S +L++   Y
Sbjct  1    LRDLLFALQGISGSYIRFD-------ESDSRIVDDIRIPGILPPSLRSLLSRLLELGLLY  53

Query  118  SALESFVEVQSRAEYGAVNHALCATIRRILKDYLILVAQLETQLLNHSNFTLHMLHLHTM  177
              L  FVE  S  EYG V  ALCA ++  L +Y  L+AQLE+QLL  S+  L        
Sbjct  54   RRLRKFVESSSSFEYGLVLQALCAALQEELTEYYRLIAQLESQLLEASDSIL--------  105

Query  178  PTSQCLSQLYSLGQELLRRNGLLDQDIDESIDDFDDVDNILEQLKEGGDLIPGAMSSKKI  237
                 L +L    Q  L    +L               N++E +++              
Sbjct  106  ----TLLRLVVWLQPPLLLLRVLS--------------NLVEAVEKQN------------  135

Query  238  CKGGNVLRLLTERLATFSGDPTTKTLLEKLLRDASRPYMAMLNEWLHHGDIKDPHAEFLI  297
             KGG +L LL E  AT  GDP  + LL +LL+  SRPY+ ML  W++ G++ DP+ EF +
Sbjct  136  LKGGALLSLLHE--ATSHGDPFVRELLSRLLQRVSRPYLEMLERWIYEGELDDPYNEFFV  193

Query  298  KEQKWIKREKLEEDYTDEYWEKRYTIRDNEVPPQLE-GVKDKVLLAGKYLNVVRECGG--  354
            +E         E   +D+ WE +YT+R   +P  L   + +K+LL GK LN +REC G  
Sbjct  194  EEN---PSVAKESLTSDDLWEDKYTLRPEMLPSFLSPDLAEKILLTGKSLNFLRECCGDS  250

Query  355  --VDISQKV-----TDVPHTLDDPRFLDNVNAAYTYANAS  387
              ++ +             ++      + +++AY  A+  
Sbjct  251  WRIEDTASELEYGDDLSESSIFSLSLEELIDSAYKLASRR  290


>CDD:461187 pfam04130, Spc97_Spc98, Spc97 / Spc98 family.  The spindle pole 
body (SPB) functions as the microtubule-organising centre 
in yeast. Members of this family are spindle pole body (SBP) 
components such as Spc97 and Spc98 that form a complex with 
gamma-tubulin. This family of proteins includes the grip motif 
1 and grip moti 2. Members of this family all form components 
of the gamma-tubulin complex, GCP.
Length=297

 Score = 163 bits (416),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 76/271 (28%), Positives = 119/271 (44%), Gaps = 65/271 (24%)

Query  401  RFRSLKHYFFLDRSDFFSYFLELGSSELRKPAKNVNENKLQSLLDLVLRQPGSIAASDPF  460
              R+LK Y  L + DF S  ++    EL KPA ++  + L  LL+  +R   +       
Sbjct  4    HLRALKRYLLLGQGDFISRLMDALFDELWKPASSLLRHNLTGLLEEAIRSSNAQRDLPDV  63

Query  461  KEDVKVRMNKIGLTKWLMQVVSVSGIDQDNPEAVLERYQAPQTQGGEDDKDIVGFDALEL  520
               +  R++   L                                        G+D L L
Sbjct  64   LRRLDARLDPDSLG---------------------------------------GWDFLTL  84

Query  521  DYSVPFPLSLVISRKTVLRYQLIFRHLLSLRHLETLLTTSWLDQNKVVGWRHKSSDRRLE  580
            +Y VP+PLSLV++ + + +YQ +FR LL L+ +E +L++ W         R + S  R  
Sbjct  85   EYKVPWPLSLVLTPEALTKYQRLFRFLLRLKRVEFVLSSLWR--------RRQMSGSRSV  136

Query  581  TWKRRAWSLRSKMLVFVQQLLYFCTAEVVEPNWQNLMDRVNGTDADGSEVTINGTKQVNR  640
             W  RA  LR +M+ FV QL Y+   EV+EP+W+   +++          +         
Sbjct  137  LWH-RARLLRQEMIHFVSQLQYYVMFEVIEPSWREFEEKLQ------KAAS---------  180

Query  641  TVDELMQDHVDFLDTCLKECMLT--QAKLLK  669
             +D+L++ H DFLD  LK+C LT  Q  LLK
Sbjct  181  DLDDLIEAHEDFLDRILKKCFLTSPQQPLLK  211



Lambda      K        H        a         alpha
   0.319    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 856852990


Query= TCONS_00018133

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00012167

Length=665
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465456 pfam17681, GCP_N_terminal, Gamma tubulin complex compo...  209     8e-63
CDD:461187 pfam04130, Spc97_Spc98, Spc97 / Spc98 family. The spin...  162     9e-46


>CDD:465456 pfam17681, GCP_N_terminal, Gamma tubulin complex component N-terminal. 
 This is the N-terminal domain found in components 
of the gamma-tubulin complex proteins (GCPs). Family members 
include spindle pole body (SBP) components such as Spc97 and 
Spc98 which function as the microtubule-organizing center 
in yeast. Furthermore, family members such as human GCP4 (Gamma-tubulin 
complex component 4) have been structurally elucidated. 
Functional studies have shown that the N-terminal domain 
defines the functional identity of GCPs, suggesting that 
all GCPs are incorporated into the helix of gamma-tubulin 
small complexes (gTURCs) via lateral interactions between their 
N-terminal domains. Thereby, they define the direct neighbors 
and position the GCPs within the helical wall of gTuRC. 
Sequence alignment of human GCPs based on the GCP4 structure 
helped delineate conserved regions in the N- and C-terminal 
domains. In addition to the conserved sequences, the N-terminal 
domains carry specific insertions of various sizes depending 
on the GCP, i.e. internal insertions or N-terminal 
extensions. These insertions may equally contribute to the function 
of individual GCPs as they have been implied in specific 
interactions with regulatory or structural proteins. For 
instance, GCP6 carries a large internal insertion phosphorylated 
by Plk4 and containing a domain of interaction with keratins, 
whereas the N-terminal extension of GCP3 interacts 
with the recruitment protein MOZART1.
Length=298

 Score = 209 bits (533),  Expect = 8e-63, Method: Composition-based stats.
 Identities = 104/340 (31%), Positives = 155/340 (46%), Gaps = 60/340 (18%)

Query  58   LEDLLFVFMGFEGRYIHYHHTFDPTAEKDRLAGPAFQLPSGLDPTLRDLTSSMLKMATHY  117
            L DLLF   G  G YI +        E D       ++P  L P+LR L S +L++   Y
Sbjct  1    LRDLLFALQGISGSYIRFD-------ESDSRIVDDIRIPGILPPSLRSLLSRLLELGLLY  53

Query  118  SALESFVEVQSRAEYGAVNHALCATIRRILKDYLILVAQLETQLLNHSNFTLHMLHLHTM  177
              L  FVE  S  EYG V  ALCA ++  L +Y  L+AQLE+QLL  S+  L        
Sbjct  54   RRLRKFVESSSSFEYGLVLQALCAALQEELTEYYRLIAQLESQLLEASDSIL--------  105

Query  178  PTSQCLSQLYSLGQELLRRNGLLDQDIDESIDDFDDVDNILEQLKEGGDLIPGAMSSKKI  237
                 L +L    Q  L    +L               N++E +++              
Sbjct  106  ----TLLRLVVWLQPPLLLLRVLS--------------NLVEAVEKQN------------  135

Query  238  CKGGNVLRLLTERLATFSGDPTTKTLLEKLLRDASRPYMAMLNEWLHHGDIKDPHAEFLI  297
             KGG +L LL E  AT  GDP  + LL +LL+  SRPY+ ML  W++ G++ DP+ EF +
Sbjct  136  LKGGALLSLLHE--ATSHGDPFVRELLSRLLQRVSRPYLEMLERWIYEGELDDPYNEFFV  193

Query  298  KEQKWIKREKLEEDYTDEYWEKRYTIRDNEVPPQLE-GVKDKVLLAGKYLNVVRECGG--  354
            +E         E   +D+ WE +YT+R   +P  L   + +K+LL GK LN +REC G  
Sbjct  194  EEN---PSVAKESLTSDDLWEDKYTLRPEMLPSFLSPDLAEKILLTGKSLNFLRECCGDS  250

Query  355  --VDISQKV-----TDVPHTLDDPRFLDNVNAAYTYANAS  387
              ++ +             ++      + +++AY  A+  
Sbjct  251  WRIEDTASELEYGDDLSESSIFSLSLEELIDSAYKLASRR  290


>CDD:461187 pfam04130, Spc97_Spc98, Spc97 / Spc98 family.  The spindle pole 
body (SPB) functions as the microtubule-organising centre 
in yeast. Members of this family are spindle pole body (SBP) 
components such as Spc97 and Spc98 that form a complex with 
gamma-tubulin. This family of proteins includes the grip motif 
1 and grip moti 2. Members of this family all form components 
of the gamma-tubulin complex, GCP.
Length=297

 Score = 162 bits (413),  Expect = 9e-46, Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 115/263 (44%), Gaps = 63/263 (24%)

Query  401  RFRSLKHYFFLDRSDFFSYFLELGSSELRKPAKNVNENKLQSLLDLVLRQPGSIAASDPF  460
              R+LK Y  L + DF S  ++    EL KPA ++  + L  LL+  +R   +       
Sbjct  4    HLRALKRYLLLGQGDFISRLMDALFDELWKPASSLLRHNLTGLLEEAIRSSNAQRDLPDV  63

Query  461  KEDVKVRMNKIGLTKWLMQVVSVSGIDQDNPEAVLERYQAPQTQGGEDDKDIVGFDALEL  520
               +  R++   L                                        G+D L L
Sbjct  64   LRRLDARLDPDSLG---------------------------------------GWDFLTL  84

Query  521  DYSVPFPLSLVISRKTVLRYQLIFRHLLSLRHLETLLTTSWLDQNKVVGWRHKSSDRRLE  580
            +Y VP+PLSLV++ + + +YQ +FR LL L+ +E +L++ W         R + S  R  
Sbjct  85   EYKVPWPLSLVLTPEALTKYQRLFRFLLRLKRVEFVLSSLWR--------RRQMSGSRSV  136

Query  581  TWKRRAWSLRSKMLVFVQQLLYFCTAEVVEPNWQNLMDRVNGTDADGSEVTINGTKQVNR  640
             W  RA  LR +M+ FV QL Y+   EV+EP+W+   +++          +         
Sbjct  137  LWH-RARLLRQEMIHFVSQLQYYVMFEVIEPSWREFEEKLQ------KAAS---------  180

Query  641  TVDELMQDHVDFLDTCLKECMLT  663
             +D+L++ H DFLD  LK+C LT
Sbjct  181  DLDDLIEAHEDFLDRILKKCFLT  203



Lambda      K        H        a         alpha
   0.319    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 843579880


Query= TCONS_00012168

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459721 pfam00227, Proteasome, Proteasome subunit. The proteas...  155     9e-49


>CDD:459721 pfam00227, Proteasome, Proteasome subunit.  The proteasome is 
a multisubunit structure that degrades proteins. Protein degradation 
is an essential component of regulation because proteins 
can become misfolded, damaged, or unnecessary. Proteasomes 
and their homologs vary greatly in complexity: from HslV 
(heat shock locus v), which is encoded by 1 gene in bacteria, 
to the eukaryotic 20S proteasome, which is encoded by more 
than 14 genes. Recently evidence of two novel groups of 
bacterial proteasomes was proposed. The first is Anbu, which 
is sparsely distributed among cyanobacteria and proteobacteria. 
The second is call beta-proteobacteria proteasome homolog 
(BPH).
Length=188

 Score = 155 bits (395),  Expect = 9e-49, Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 92/154 (60%), Gaps = 10/154 (6%)

Query  31   IKLGSTAIGVATSEGVILGVEKRVT--STLLEASSVEKIVEIDQHIGCAMSGLQADARSL  88
            +K G+T +G+   +GV+L  +KR T  S LL   +VEKI +ID HIG A +GL ADAR+L
Sbjct  1    VKTGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADARTL  60

Query  89   IEHARVECQNHAFHYAEPLRVESTTQAICDLALRFGETGDDDESVMSRPFGVALLIAGYD  148
            ++ AR E Q +   Y  P+ VE     I DL   + +          RPFGV+LLIAGYD
Sbjct  61   VDRARAEAQLYRLRYGRPIPVEL-AARIADLLQAYTQYS------GRRPFGVSLLIAGYD  113

Query  149  EDG-PQLYHAEPSGTFYRYDAKAIGSGSEGVMEE  181
            EDG P LY  +PSG++  Y A AIGSGS+     
Sbjct  114  EDGGPHLYQIDPSGSYIEYKATAIGSGSQYAYGV  147



Lambda      K        H        a         alpha
   0.315    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00018134

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459721 pfam00227, Proteasome, Proteasome subunit. The proteas...  131     6e-40
CDD:463156 pfam10584, Proteasome_A_N, Proteasome subunit A N-term...  53.9    2e-11


>CDD:459721 pfam00227, Proteasome, Proteasome subunit.  The proteasome is 
a multisubunit structure that degrades proteins. Protein degradation 
is an essential component of regulation because proteins 
can become misfolded, damaged, or unnecessary. Proteasomes 
and their homologs vary greatly in complexity: from HslV 
(heat shock locus v), which is encoded by 1 gene in bacteria, 
to the eukaryotic 20S proteasome, which is encoded by more 
than 14 genes. Recently evidence of two novel groups of 
bacterial proteasomes was proposed. The first is Anbu, which 
is sparsely distributed among cyanobacteria and proteobacteria. 
The second is call beta-proteobacteria proteasome homolog 
(BPH).
Length=188

 Score = 131 bits (333),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 59/130 (45%), Positives = 78/130 (60%), Gaps = 10/130 (8%)

Query  31   IKLGSTAIGVATSEGVILGVEKRVT--STLLEASSVEKIVEIDQHIGCAMSGLQADARSL  88
            +K G+T +G+   +GV+L  +KR T  S LL   +VEKI +ID HIG A +GL ADAR+L
Sbjct  1    VKTGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADARTL  60

Query  89   IEHARVECQNHAFHYAEPLRVESTTQAICDLALRFGETGDDDESVMSRPFGVALLIAGYD  148
            ++ AR E Q +   Y  P+ VE     I DL   + +          RPFGV+LLIAGYD
Sbjct  61   VDRARAEAQLYRLRYGRPIPVEL-AARIADLLQAYTQYS------GRRPFGVSLLIAGYD  113

Query  149  EDG-PQLYVV  157
            EDG P LY +
Sbjct  114  EDGGPHLYQI  123


>CDD:463156 pfam10584, Proteasome_A_N, Proteasome subunit A N-terminal signature. 
 This domain is conserved in the A subunits of the 
proteasome complex proteins.
Length=23

 Score = 53.9 bits (131),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 17/23 (74%), Positives = 21/23 (91%), Gaps = 0/23 (0%)

Query  8   YDRGINTFSPEGRLFQVEYSLEA  30
           YDR I TFSP+GRLFQVEY+++A
Sbjct  1   YDRSITTFSPDGRLFQVEYAMKA  23



Lambda      K        H        a         alpha
   0.320    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00012169

Length=419


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00018135

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459721 pfam00227, Proteasome, Proteasome subunit. The proteas...  187     2e-60


>CDD:459721 pfam00227, Proteasome, Proteasome subunit.  The proteasome is 
a multisubunit structure that degrades proteins. Protein degradation 
is an essential component of regulation because proteins 
can become misfolded, damaged, or unnecessary. Proteasomes 
and their homologs vary greatly in complexity: from HslV 
(heat shock locus v), which is encoded by 1 gene in bacteria, 
to the eukaryotic 20S proteasome, which is encoded by more 
than 14 genes. Recently evidence of two novel groups of 
bacterial proteasomes was proposed. The first is Anbu, which 
is sparsely distributed among cyanobacteria and proteobacteria. 
The second is call beta-proteobacteria proteasome homolog 
(BPH).
Length=188

 Score = 187 bits (476),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 85/195 (44%), Positives = 117/195 (60%), Gaps = 11/195 (6%)

Query  31   IKLGSTAIGVATSEGVILGVEKRVT--STLLEASSVEKIVEIDQHIGCAMSGLQADARSL  88
            +K G+T +G+   +GV+L  +KR T  S LL   +VEKI +ID HIG A +GL ADAR+L
Sbjct  1    VKTGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADARTL  60

Query  89   IEHARVECQNHAFHYAEPLRVESTTQAICDLALRFGETGDDDESVMSRPFGVALLIAGYD  148
            ++ AR E Q +   Y  P+ VE     I DL   + +          RPFGV+LLIAGYD
Sbjct  61   VDRARAEAQLYRLRYGRPIPVELA-ARIADLLQAYTQYS------GRRPFGVSLLIAGYD  113

Query  149  EDG-PQLYHAEPSGTFYRYDAKAIGSGSEGAQAELQNEYHRSLTLPEAETLVLKTLKQVM  207
            EDG P LY  +PSG++  Y A AIGSGS+ A   L+  Y   LTL EA  L +K LK+ +
Sbjct  114  EDGGPHLYQIDPSGSYIEYKATAIGSGSQYAYGVLEKLYRPDLTLEEAVELAVKALKEAI  173

Query  208  E-EKLDAKNVQLASV  221
            + + L   N+++A +
Sbjct  174  DRDALSGGNIEVAVI  188



Lambda      K        H        a         alpha
   0.314    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00012170

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459721 pfam00227, Proteasome, Proteasome subunit. The proteas...  187     2e-60


>CDD:459721 pfam00227, Proteasome, Proteasome subunit.  The proteasome is 
a multisubunit structure that degrades proteins. Protein degradation 
is an essential component of regulation because proteins 
can become misfolded, damaged, or unnecessary. Proteasomes 
and their homologs vary greatly in complexity: from HslV 
(heat shock locus v), which is encoded by 1 gene in bacteria, 
to the eukaryotic 20S proteasome, which is encoded by more 
than 14 genes. Recently evidence of two novel groups of 
bacterial proteasomes was proposed. The first is Anbu, which 
is sparsely distributed among cyanobacteria and proteobacteria. 
The second is call beta-proteobacteria proteasome homolog 
(BPH).
Length=188

 Score = 187 bits (476),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 85/195 (44%), Positives = 117/195 (60%), Gaps = 11/195 (6%)

Query  31   IKLGSTAIGVATSEGVILGVEKRVT--STLLEASSVEKIVEIDQHIGCAMSGLQADARSL  88
            +K G+T +G+   +GV+L  +KR T  S LL   +VEKI +ID HIG A +GL ADAR+L
Sbjct  1    VKTGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADARTL  60

Query  89   IEHARVECQNHAFHYAEPLRVESTTQAICDLALRFGETGDDDESVMSRPFGVALLIAGYD  148
            ++ AR E Q +   Y  P+ VE     I DL   + +          RPFGV+LLIAGYD
Sbjct  61   VDRARAEAQLYRLRYGRPIPVELA-ARIADLLQAYTQYS------GRRPFGVSLLIAGYD  113

Query  149  EDG-PQLYHAEPSGTFYRYDAKAIGSGSEGAQAELQNEYHRSLTLPEAETLVLKTLKQVM  207
            EDG P LY  +PSG++  Y A AIGSGS+ A   L+  Y   LTL EA  L +K LK+ +
Sbjct  114  EDGGPHLYQIDPSGSYIEYKATAIGSGSQYAYGVLEKLYRPDLTLEEAVELAVKALKEAI  173

Query  208  E-EKLDAKNVQLASV  221
            + + L   N+++A +
Sbjct  174  DRDALSGGNIEVAVI  188



Lambda      K        H        a         alpha
   0.314    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00012171

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459721 pfam00227, Proteasome, Proteasome subunit. The proteas...  145     5e-45
CDD:463156 pfam10584, Proteasome_A_N, Proteasome subunit A N-term...  52.7    9e-11


>CDD:459721 pfam00227, Proteasome, Proteasome subunit.  The proteasome is 
a multisubunit structure that degrades proteins. Protein degradation 
is an essential component of regulation because proteins 
can become misfolded, damaged, or unnecessary. Proteasomes 
and their homologs vary greatly in complexity: from HslV 
(heat shock locus v), which is encoded by 1 gene in bacteria, 
to the eukaryotic 20S proteasome, which is encoded by more 
than 14 genes. Recently evidence of two novel groups of 
bacterial proteasomes was proposed. The first is Anbu, which 
is sparsely distributed among cyanobacteria and proteobacteria. 
The second is call beta-proteobacteria proteasome homolog 
(BPH).
Length=188

 Score = 145 bits (368),  Expect = 5e-45, Method: Composition-based stats.
 Identities = 66/144 (46%), Positives = 87/144 (60%), Gaps = 10/144 (7%)

Query  31   IKLGSTAIGVATSEGVILGVEKRVT--STLLEASSVEKIVEIDQHIGCAMSGLQADARSL  88
            +K G+T +G+   +GV+L  +KR T  S LL   +VEKI +ID HIG A +GL ADAR+L
Sbjct  1    VKTGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADARTL  60

Query  89   IEHARVECQNHAFHYAEPLRVESTTQAICDLALRFGETGDDDESVMSRPFGVALLIAGYD  148
            ++ AR E Q +   Y  P+ VE     I DL   + +          RPFGV+LLIAGYD
Sbjct  61   VDRARAEAQLYRLRYGRPIPVEL-AARIADLLQAYTQYS------GRRPFGVSLLIAGYD  113

Query  149  EDG-PQLYHAEPSGTFYRYDAKAI  171
            EDG P LY  +PSG++  Y A AI
Sbjct  114  EDGGPHLYQIDPSGSYIEYKATAI  137


>CDD:463156 pfam10584, Proteasome_A_N, Proteasome subunit A N-terminal signature. 
 This domain is conserved in the A subunits of the 
proteasome complex proteins.
Length=23

 Score = 52.7 bits (128),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 17/23 (74%), Positives = 21/23 (91%), Gaps = 0/23 (0%)

Query  8   YDRGINTFSPEGRLFQVEYSLEA  30
           YDR I TFSP+GRLFQVEY+++A
Sbjct  1   YDRSITTFSPDGRLFQVEYAMKA  23



Lambda      K        H        a         alpha
   0.316    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00012172

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459721 pfam00227, Proteasome, Proteasome subunit. The proteas...  187     2e-60


>CDD:459721 pfam00227, Proteasome, Proteasome subunit.  The proteasome is 
a multisubunit structure that degrades proteins. Protein degradation 
is an essential component of regulation because proteins 
can become misfolded, damaged, or unnecessary. Proteasomes 
and their homologs vary greatly in complexity: from HslV 
(heat shock locus v), which is encoded by 1 gene in bacteria, 
to the eukaryotic 20S proteasome, which is encoded by more 
than 14 genes. Recently evidence of two novel groups of 
bacterial proteasomes was proposed. The first is Anbu, which 
is sparsely distributed among cyanobacteria and proteobacteria. 
The second is call beta-proteobacteria proteasome homolog 
(BPH).
Length=188

 Score = 187 bits (476),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 85/195 (44%), Positives = 117/195 (60%), Gaps = 11/195 (6%)

Query  35   IKLGSTAIGVATSEGVILGVEKRVT--STLLEASSVEKIVEIDQHIGCAMSGLQADARSL  92
            +K G+T +G+   +GV+L  +KR T  S LL   +VEKI +ID HIG A +GL ADAR+L
Sbjct  1    VKTGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADARTL  60

Query  93   IEHARVECQNHAFHYAEPLRVESTTQAICDLALRFGETGDDDESVMSRPFGVALLIAGYD  152
            ++ AR E Q +   Y  P+ VE     I DL   + +          RPFGV+LLIAGYD
Sbjct  61   VDRARAEAQLYRLRYGRPIPVELA-ARIADLLQAYTQYS------GRRPFGVSLLIAGYD  113

Query  153  EDG-PQLYHAEPSGTFYRYDAKAIGSGSEGAQAELQNEYHRSLTLPEAETLVLKTLKQVM  211
            EDG P LY  +PSG++  Y A AIGSGS+ A   L+  Y   LTL EA  L +K LK+ +
Sbjct  114  EDGGPHLYQIDPSGSYIEYKATAIGSGSQYAYGVLEKLYRPDLTLEEAVELAVKALKEAI  173

Query  212  E-EKLDAKNVQLASV  225
            + + L   N+++A +
Sbjct  174  DRDALSGGNIEVAVI  188



Lambda      K        H        a         alpha
   0.315    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00018137

Length=946


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1203494600


Query= TCONS_00012174

Length=928


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1195783162


Query= TCONS_00018138

Length=1040


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0632    0.140     1.90     42.6     43.6 

Effective search space used: 1336586944


Query= TCONS_00018139

Length=558


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 696403448


Query= TCONS_00012175

Length=1058


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1362072712


Query= TCONS_00012176

Length=652


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00012177

Length=419


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00018140

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00018141

Length=385


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 459789232


Query= TCONS_00012178

Length=256


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00012180

Length=419


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00012179

Length=419


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00012181

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesic...  208     2e-66


>CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesicular trafficking. 
 This Pfam entry includes proteins that are not matched 
by pfam03114.
Length=286

 Score = 208 bits (530),  Expect = 2e-66, Method: Composition-based stats.
 Identities = 96/290 (33%), Positives = 151/290 (52%), Gaps = 18/290 (6%)

Query  14   SFTPFAARTQQLIKEQLGQAEDKTQLPDEYIELEKRVDALKLVHQKLLQVTSQYSNEAYD  73
            S   FA +T +L++E+LGQ +D +QLP +Y+ELE++ D+LK V+++LLQVT  Y  E YD
Sbjct  1    SILSFATKTTRLLQEKLGQVQDISQLPPQYLELEQKCDSLKKVYKRLLQVTKTYEVEGYD  60

Query  74   YPPNIRESFNDLGRTISEKVQLLSQASSPAEAQAALVAPPSAKPQ-------------PK  120
            YPPN  ES ND   +I  K   L   SS  E +  L      +               P+
Sbjct  61   YPPNFTESINDFWDSIGGKFNQLKNVSSLEELENILFGKGKKEKSKAEKEIQATSGLLPR  120

Query  121  TFNHAIARASLAGSQTLAQVHPGE-DPLATALEKYALASEKVGEARLAQDAQIQSRFLAG  179
            T   A+++A+   S+   ++   + +PL+ A  +++    ++  ARL QD++I   F   
Sbjct  121  TLAGALSKAAKDSSEIFQKLKDEDVNPLSKAFLQWSDCYAEIANARLEQDSKIVKEFNEK  180

Query  180  WNTTLNTNLMFAAKARKNVENARLMLDSIKARRKAAAGGDLDNLSEEARAEIEQAEDEFV  239
                LN +   A + RK V  +RL  D+ + + + A     +N  E  +  +E  EDEFV
Sbjct  181  LRELLNQSFKKAHELRKKVYESRLQFDTARYKVEEA---KPENE-ETDKVLLESLEDEFV  236

Query  240  GQTEEAVSVMKNVLDTPEPLRNLADLIAAQLEFHKRAYEILSELAPVVDG  289
              TEEAV  MK +LD  + +  L     AQLE+H++  + L EL   ++ 
Sbjct  237  SATEEAVEEMKEILDPSKNISLLKLFQNAQLEYHEKCAKALEELLSNLNK  286



Lambda      K        H        a         alpha
   0.311    0.126    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00018143

Length=117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesic...  62.1    3e-13


>CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesicular trafficking. 
 This Pfam entry includes proteins that are not matched 
by pfam03114.
Length=286

 Score = 62.1 bits (151),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 52/99 (53%), Gaps = 4/99 (4%)

Query  3    AAKARKNVENARLMLDSIKARRKAAAGGDLDNLSEEARAEIEQAEDEFVGQTEEAVSVMK  62
            A + RK V  +RL  D+ + + + A     +N  E  +  +E  EDEFV  TEEAV  MK
Sbjct  192  AHELRKKVYESRLQFDTARYKVEEA---KPENE-ETDKVLLESLEDEFVSATEEAVEEMK  247

Query  63   NVLDTPEPLRNLADLIAAQLEFHKRAYEILSELAPVVDG  101
             +LD  + +  L     AQLE+H++  + L EL   ++ 
Sbjct  248  EILDPSKNISLLKLFQNAQLEYHEKCAKALEELLSNLNK  286



Lambda      K        H        a         alpha
   0.311    0.127    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00018144

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesic...  215     2e-68
CDD:460810 pfam03114, BAR, BAR domain. BAR domains are dimerizati...  61.6    2e-11


>CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesicular trafficking. 
 This Pfam entry includes proteins that are not matched 
by pfam03114.
Length=286

 Score = 215 bits (549),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 96/290 (33%), Positives = 151/290 (52%), Gaps = 18/290 (6%)

Query  14   SFTPFAARTQQLIKEQLGQAEDKTQLPDEYIELEKRVDALKLVHQKLLQVTSQYSNEAYD  73
            S   FA +T +L++E+LGQ +D +QLP +Y+ELE++ D+LK V+++LLQVT  Y  E YD
Sbjct  1    SILSFATKTTRLLQEKLGQVQDISQLPPQYLELEQKCDSLKKVYKRLLQVTKTYEVEGYD  60

Query  74   YPPNIRESFNDLGRTISEKVQLLSQASSPAEAQAALVAPPSAKPQ-------------PK  120
            YPPN  ES ND   +I  K   L   SS  E +  L      +               P+
Sbjct  61   YPPNFTESINDFWDSIGGKFNQLKNVSSLEELENILFGKGKKEKSKAEKEIQATSGLLPR  120

Query  121  TFNHAIARASLAGSQTLAQVHPGE-DPLATALEKYALASEKVGEARLAQDAQIQSRFLAG  179
            T   A+++A+   S+   ++   + +PL+ A  +++    ++  ARL QD++I   F   
Sbjct  121  TLAGALSKAAKDSSEIFQKLKDEDVNPLSKAFLQWSDCYAEIANARLEQDSKIVKEFNEK  180

Query  180  WNTTLNTNLMFAAKARKNVENARLMLDSIKARRKAAAGGDLDNLSEEARAEIEQAEDEFV  239
                LN +   A + RK V  +RL  D+ + + + A     +N  E  +  +E  EDEFV
Sbjct  181  LRELLNQSFKKAHELRKKVYESRLQFDTARYKVEEA---KPENE-ETDKVLLESLEDEFV  236

Query  240  GQTEEAVSVMKNVLDTPEPLRNLADLIAAQLEFHKRAYEILSELAPVVDG  289
              TEEAV  MK +LD  + +  L     AQLE+H++  + L EL   ++ 
Sbjct  237  SATEEAVEEMKEILDPSKNISLLKLFQNAQLEYHEKCAKALEELLSNLNK  286


>CDD:460810 pfam03114, BAR, BAR domain.  BAR domains are dimerization, lipid 
binding and curvature sensing modules found in many different 
protein families. A BAR domain with an additional N-terminal 
amphipathic helix (an N-BAR) can drive membrane curvature. 
These N-BAR domains are found in amphiphysin, endophilin, 
BRAP and Nadrin. BAR domains are also frequently found alongside 
domains that determine lipid specificity, like pfam00169 
and pfam00787 domains in beta centaurins and sorting nexins 
respectively.
Length=235

 Score = 61.6 bits (150),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 59/273 (22%), Positives = 105/273 (38%), Gaps = 54/273 (20%)

Query  20   ARTQQLIKEQLGQAEDKTQLPDEYIELEKRVDALKLVHQKLLQVTSQYSNEAYDYPPNIR  79
             R  QL+ E++G AE KT+L +++ ELE+R D  +                         
Sbjct  6    NRASQLLGEKVGGAE-KTKLDEDFEELERRFDTTE-------------------------  39

Query  80   ESFNDLGRTISEKVQLLSQASSPAEAQAALVAPPSAKPQPKTFNHAIARASLAGS-QTLA  138
                   + + +  +   Q +  A A              K          LA S     
Sbjct  40   ----KEIKKLQKDTKGYLQPNPGARA--------------KQTVLEQPEELLAESMIEAG  81

Query  139  QVHPGEDPLATALEKYALASEKVGEARLAQDAQIQSRFLAGWNTTLN--TNLMFAAKARK  196
            +    +     ALE Y  A +++ +     D ++++ FL      L     +    K RK
Sbjct  82   KDLGEDSSFGKALEDYGEALKRLAQLLEQLDDRVETNFLDPLRNLLKEFKEIQ---KHRK  138

Query  197  NVENARLMLDSIKARRKAAAGGDLDNLSEEARA--EIEQAEDEFVGQTEEAVSVMKNVLD  254
             +E  RL  D+ K R K A         +E++A  E+ +A+ +F    E+  +++ N+L 
Sbjct  139  KLERKRLDYDAAKTRVKKAKKKKSSKAKDESQAEEELRKAQAKFEESNEQLKALLPNLLS  198

Query  255  TPEPL--RNLADLIAAQLEFHKRAYEILSELAP  285
                     L   + AQL+FH++ Y++L +L  
Sbjct  199  LEVEFVVNQLVAFVEAQLDFHRQCYQLLEQLQQ  231



Lambda      K        H        a         alpha
   0.317    0.130    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00018145

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesic...  209     7e-67


>CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesicular trafficking. 
 This Pfam entry includes proteins that are not matched 
by pfam03114.
Length=286

 Score = 209 bits (533),  Expect = 7e-67, Method: Composition-based stats.
 Identities = 96/290 (33%), Positives = 151/290 (52%), Gaps = 18/290 (6%)

Query  14   SFTPFAARTQQLIKEQLGQAEDKTQLPDEYIELEKRVDALKLVHQKLLQVTSQYSNEAYD  73
            S   FA +T +L++E+LGQ +D +QLP +Y+ELE++ D+LK V+++LLQVT  Y  E YD
Sbjct  1    SILSFATKTTRLLQEKLGQVQDISQLPPQYLELEQKCDSLKKVYKRLLQVTKTYEVEGYD  60

Query  74   YPPNIRESFNDLGRTISEKVQLLSQASSPAEAQAALVAPPSAKPQ-------------PK  120
            YPPN  ES ND   +I  K   L   SS  E +  L      +               P+
Sbjct  61   YPPNFTESINDFWDSIGGKFNQLKNVSSLEELENILFGKGKKEKSKAEKEIQATSGLLPR  120

Query  121  TFNHAIARASLAGSQTLAQVHPGE-DPLATALEKYALASEKVGEARLAQDAQIQSRFLAG  179
            T   A+++A+   S+   ++   + +PL+ A  +++    ++  ARL QD++I   F   
Sbjct  121  TLAGALSKAAKDSSEIFQKLKDEDVNPLSKAFLQWSDCYAEIANARLEQDSKIVKEFNEK  180

Query  180  WNTTLNTNLMFAAKARKNVENARLMLDSIKARRKAAAGGDLDNLSEEARAEIEQAEDEFV  239
                LN +   A + RK V  +RL  D+ + + + A     +N  E  +  +E  EDEFV
Sbjct  181  LRELLNQSFKKAHELRKKVYESRLQFDTARYKVEEA---KPENE-ETDKVLLESLEDEFV  236

Query  240  GQTEEAVSVMKNVLDTPEPLRNLADLIAAQLEFHKRAYEILSELAPVVDG  289
              TEEAV  MK +LD  + +  L     AQLE+H++  + L EL   ++ 
Sbjct  237  SATEEAVEEMKEILDPSKNISLLKLFQNAQLEYHEKCAKALEELLSNLNK  286



Lambda      K        H        a         alpha
   0.312    0.126    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00012183

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesic...  208     1e-66


>CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesicular trafficking. 
 This Pfam entry includes proteins that are not matched 
by pfam03114.
Length=286

 Score = 208 bits (530),  Expect = 1e-66, Method: Composition-based stats.
 Identities = 96/290 (33%), Positives = 151/290 (52%), Gaps = 18/290 (6%)

Query  14   SFTPFAARTQQLIKEQLGQAEDKTQLPDEYIELEKRVDALKLVHQKLLQVTSQYSNEAYD  73
            S   FA +T +L++E+LGQ +D +QLP +Y+ELE++ D+LK V+++LLQVT  Y  E YD
Sbjct  1    SILSFATKTTRLLQEKLGQVQDISQLPPQYLELEQKCDSLKKVYKRLLQVTKTYEVEGYD  60

Query  74   YPPNIRESFNDLGRTISEKVQLLSQASSPAEAQAALVAPPSAKPQ-------------PK  120
            YPPN  ES ND   +I  K   L   SS  E +  L      +               P+
Sbjct  61   YPPNFTESINDFWDSIGGKFNQLKNVSSLEELENILFGKGKKEKSKAEKEIQATSGLLPR  120

Query  121  TFNHAIARASLAGSQTLAQVHPGE-DPLATALEKYALASEKVGEARLAQDAQIQSRFLAG  179
            T   A+++A+   S+   ++   + +PL+ A  +++    ++  ARL QD++I   F   
Sbjct  121  TLAGALSKAAKDSSEIFQKLKDEDVNPLSKAFLQWSDCYAEIANARLEQDSKIVKEFNEK  180

Query  180  WNTTLNTNLMFAAKARKNVENARLMLDSIKARRKAAAGGDLDNLSEEARAEIEQAEDEFV  239
                LN +   A + RK V  +RL  D+ + + + A     +N  E  +  +E  EDEFV
Sbjct  181  LRELLNQSFKKAHELRKKVYESRLQFDTARYKVEEA---KPENE-ETDKVLLESLEDEFV  236

Query  240  GQTEEAVSVMKNVLDTPEPLRNLADLIAAQLEFHKRAYEILSELAPVVDG  289
              TEEAV  MK +LD  + +  L     AQLE+H++  + L EL   ++ 
Sbjct  237  SATEEAVEEMKEILDPSKNISLLKLFQNAQLEYHEKCAKALEELLSNLNK  286



Lambda      K        H        a         alpha
   0.312    0.126    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00018146

Length=178
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesic...  66.3    6e-14


>CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesicular trafficking. 
 This Pfam entry includes proteins that are not matched 
by pfam03114.
Length=286

 Score = 66.3 bits (162),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 52/99 (53%), Gaps = 4/99 (4%)

Query  3    AAKARKNVENARLMLDSIKARRKAAAGGDLDNLSEEARAEIEQAEDEFVGQTEEAVSVMK  62
            A + RK V  +RL  D+ + + + A     +N  E  +  +E  EDEFV  TEEAV  MK
Sbjct  192  AHELRKKVYESRLQFDTARYKVEEA---KPENE-ETDKVLLESLEDEFVSATEEAVEEMK  247

Query  63   NVLDTPEPLRNLADLIAAQLEFHKRAYEILSELAPVVDG  101
             +LD  + +  L     AQLE+H++  + L EL   ++ 
Sbjct  248  EILDPSKNISLLKLFQNAQLEYHEKCAKALEELLSNLNK  286



Lambda      K        H        a         alpha
   0.322    0.135    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00012185

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesic...  202     3e-64


>CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesicular trafficking. 
 This Pfam entry includes proteins that are not matched 
by pfam03114.
Length=286

 Score = 202 bits (515),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 94/290 (32%), Positives = 149/290 (51%), Gaps = 18/290 (6%)

Query  14   SFTPFAARTQQLIKEQLGQAEDKTQLPDEYIELEKRVDALKLVHQKLLQVTSQYSNEAYD  73
            S   FA +T +L++E+LGQ +D +QLP +Y+ELE++ D+LK V+++LLQVT  Y  E YD
Sbjct  1    SILSFATKTTRLLQEKLGQVQDISQLPPQYLELEQKCDSLKKVYKRLLQVTKTYEVEGYD  60

Query  74   YPPNIRESFNDLGRTISEKVQLLSQASSPAEAQAALVAPPSAKPQ-------------PK  120
            YPPN  ES ND   +I  K   L   SS  E +  L      +               P+
Sbjct  61   YPPNFTESINDFWDSIGGKFNQLKNVSSLEELENILFGKGKKEKSKAEKEIQATSGLLPR  120

Query  121  TFNHAIARASLAGSQTLAQVHPGE-DPLATALEKYALASEKVGEARLAQDAQIQSRFLAG  179
            T   A+++A+   S+   ++   + +PL+ A  +++    ++  ARL QD++I   F   
Sbjct  121  TLAGALSKAAKDSSEIFQKLKDEDVNPLSKAFLQWSDCYAEIANARLEQDSKIVKEFNEK  180

Query  180  WNTTLNTNLMFAAKARKNVENARLMLDSIKARRKAAAGGDLDNLSEEARAEIEQAEDEFV  239
                LN +   A + RK V  +RL  D+ + + + A     +N  E  +  +E  EDEFV
Sbjct  181  LRELLNQSFKKAHELRKKVYESRLQFDTARYKVEEA---KPENE-ETDKVLLESLEDEFV  236

Query  240  GQTEEAVSVMKNVCFVPQPLRNLADLIAAQLEFHKRAYEILSELAPVVDG  289
              TEEAV  MK +    + +  L     AQLE+H++  + L EL   ++ 
Sbjct  237  SATEEAVEEMKEILDPSKNISLLKLFQNAQLEYHEKCAKALEELLSNLNK  286



Lambda      K        H        a         alpha
   0.312    0.126    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00012184

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesic...  208     2e-66


>CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesicular trafficking. 
 This Pfam entry includes proteins that are not matched 
by pfam03114.
Length=286

 Score = 208 bits (530),  Expect = 2e-66, Method: Composition-based stats.
 Identities = 96/290 (33%), Positives = 151/290 (52%), Gaps = 18/290 (6%)

Query  14   SFTPFAARTQQLIKEQLGQAEDKTQLPDEYIELEKRVDALKLVHQKLLQVTSQYSNEAYD  73
            S   FA +T +L++E+LGQ +D +QLP +Y+ELE++ D+LK V+++LLQVT  Y  E YD
Sbjct  1    SILSFATKTTRLLQEKLGQVQDISQLPPQYLELEQKCDSLKKVYKRLLQVTKTYEVEGYD  60

Query  74   YPPNIRESFNDLGRTISEKVQLLSQASSPAEAQAALVAPPSAKPQ-------------PK  120
            YPPN  ES ND   +I  K   L   SS  E +  L      +               P+
Sbjct  61   YPPNFTESINDFWDSIGGKFNQLKNVSSLEELENILFGKGKKEKSKAEKEIQATSGLLPR  120

Query  121  TFNHAIARASLAGSQTLAQVHPGE-DPLATALEKYALASEKVGEARLAQDAQIQSRFLAG  179
            T   A+++A+   S+   ++   + +PL+ A  +++    ++  ARL QD++I   F   
Sbjct  121  TLAGALSKAAKDSSEIFQKLKDEDVNPLSKAFLQWSDCYAEIANARLEQDSKIVKEFNEK  180

Query  180  WNTTLNTNLMFAAKARKNVENARLMLDSIKARRKAAAGGDLDNLSEEARAEIEQAEDEFV  239
                LN +   A + RK V  +RL  D+ + + + A     +N  E  +  +E  EDEFV
Sbjct  181  LRELLNQSFKKAHELRKKVYESRLQFDTARYKVEEA---KPENE-ETDKVLLESLEDEFV  236

Query  240  GQTEEAVSVMKNVLDTPEPLRNLADLIAAQLEFHKRAYEILSELAPVVDG  289
              TEEAV  MK +LD  + +  L     AQLE+H++  + L EL   ++ 
Sbjct  237  SATEEAVEEMKEILDPSKNISLLKLFQNAQLEYHEKCAKALEELLSNLNK  286



Lambda      K        H        a         alpha
   0.311    0.126    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00018147

Length=117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesic...  62.1    3e-13


>CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesicular trafficking. 
 This Pfam entry includes proteins that are not matched 
by pfam03114.
Length=286

 Score = 62.1 bits (151),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 52/99 (53%), Gaps = 4/99 (4%)

Query  3    AAKARKNVENARLMLDSIKARRKAAAGGDLDNLSEEARAEIEQAEDEFVGQTEEAVSVMK  62
            A + RK V  +RL  D+ + + + A     +N  E  +  +E  EDEFV  TEEAV  MK
Sbjct  192  AHELRKKVYESRLQFDTARYKVEEA---KPENE-ETDKVLLESLEDEFVSATEEAVEEMK  247

Query  63   NVLDTPEPLRNLADLIAAQLEFHKRAYEILSELAPVVDG  101
             +LD  + +  L     AQLE+H++  + L EL   ++ 
Sbjct  248  EILDPSKNISLLKLFQNAQLEYHEKCAKALEELLSNLNK  286



Lambda      K        H        a         alpha
   0.311    0.127    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00018148

Length=117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesic...  62.1    3e-13


>CDD:402196 pfam10455, BAR_2, Bin/amphiphysin/Rvs domain for vesicular trafficking. 
 This Pfam entry includes proteins that are not matched 
by pfam03114.
Length=286

 Score = 62.1 bits (151),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 52/99 (53%), Gaps = 4/99 (4%)

Query  3    AAKARKNVENARLMLDSIKARRKAAAGGDLDNLSEEARAEIEQAEDEFVGQTEEAVSVMK  62
            A + RK V  +RL  D+ + + + A     +N  E  +  +E  EDEFV  TEEAV  MK
Sbjct  192  AHELRKKVYESRLQFDTARYKVEEA---KPENE-ETDKVLLESLEDEFVSATEEAVEEMK  247

Query  63   NVLDTPEPLRNLADLIAAQLEFHKRAYEILSELAPVVDG  101
             +LD  + +  L     AQLE+H++  + L EL   ++ 
Sbjct  248  EILDPSKNISLLKLFQNAQLEYHEKCAKALEELLSNLNK  286



Lambda      K        H        a         alpha
   0.311    0.127    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00012187

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00012188

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00012192

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463953 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) d...  66.5    2e-14
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  59.8    2e-12


>CDD:463953 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. 
 This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=128

 Score = 66.5 bits (163),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query  186  VVTENGETIGHDEYGSTIAIHSLAVLPEHQGKQVGSTLMKSYIQRIREAAIAE-RISIIA  244
            V  E G+ +G         I  L V P++QG+ +G  L+++      +  I    +++ A
Sbjct  35   VAFEGGQIVGVIALRDRGHISLLFVDPDYQGQGIGKALLEAVEDYAEKDGIKLSELTVNA  94

Query  245  HDHLVPFYQSFGFENRGPSKCQFGGGGWTDLVLEF  279
              + VPFY+  GF   GP   +F G  +  +  E 
Sbjct  95   SPYAVPFYEKLGFRATGPE-QEFNGIRFVPMEKEL  128


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 59.8 bits (145),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 17/78 (22%), Positives = 36/78 (46%), Gaps = 6/78 (8%)

Query  186  VVTENGETIG-----HDEYGSTIAIHSLAVLPEHQGKQVGSTLMKSYIQRIREAAIAERI  240
            V  ++G+ +G       +    +A   LAV PE++G+ +G  L++   +   +    + +
Sbjct  7    VAEDDGKIVGFAALLPLDDEGALAELRLAVHPEYRGQGIGRALLE-AAEAAAKEGGIKLL  65

Query  241  SIIAHDHLVPFYQSFGFE  258
             +   +    FY+  GFE
Sbjct  66   ELETTNRAAAFYEKLGFE  83



Lambda      K        H        a         alpha
   0.316    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00012189

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463953 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) d...  64.6    1e-13
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  59.8    3e-12


>CDD:463953 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. 
 This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=128

 Score = 64.6 bits (158),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query  186  VVTENGETIGHDEYGSTIAIHSLAVLPEHQGKQVGSTLMKSYIQRIREAAIAE-RISIIA  244
            V  E G+ +G         I  L V P++QG+ +G  L+++      +  I    +++ A
Sbjct  35   VAFEGGQIVGVIALRDRGHISLLFVDPDYQGQGIGKALLEAVEDYAEKDGIKLSELTVNA  94

Query  245  HDHLVPFYQSFGFENRGPSKCQFGG  269
              + VPFY+  GF   GP   +F G
Sbjct  95   SPYAVPFYEKLGFRATGPE-QEFNG  118


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 59.8 bits (145),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 17/78 (22%), Positives = 36/78 (46%), Gaps = 6/78 (8%)

Query  186  VVTENGETIG-----HDEYGSTIAIHSLAVLPEHQGKQVGSTLMKSYIQRIREAAIAERI  240
            V  ++G+ +G       +    +A   LAV PE++G+ +G  L++   +   +    + +
Sbjct  7    VAEDDGKIVGFAALLPLDDEGALAELRLAVHPEYRGQGIGRALLE-AAEAAAKEGGIKLL  65

Query  241  SIIAHDHLVPFYQSFGFE  258
             +   +    FY+  GFE
Sbjct  66   ELETTNRAAAFYEKLGFE  83



Lambda      K        H        a         alpha
   0.316    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00018150

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436080 pfam17835, NOG1_N, NOG1 N-terminal helical domain. Thi...  166     5e-49
CDD:462381 pfam08155, NOGCT, NOGCT (NUC087) domain. This C termin...  123     9e-35
CDD:462021 pfam06858, NOG1, Nucleolar GTP-binding protein 1 (NOG1...  113     4e-31
CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The ...  76.9    1e-17


>CDD:436080 pfam17835, NOG1_N, NOG1 N-terminal helical domain.  This domain 
is found at the N-terminus of NOG1 GTPase proteins.
Length=160

 Score = 166 bits (423),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 54/159 (34%), Positives = 101/159 (64%), Gaps = 0/159 (0%)

Query  6    KDIPPVPTNQEFLDIVLSRTQRQLPTQIRAGFKISRIRGFYTRKVKYTQETFCEKFQAIL  65
            + IP VPT++E +D  L R +R  PT  + G +I+R+R  Y R++    +T  +K   I+
Sbjct  2    EKIPIVPTSEELIDSALRRAKRIGPTTKKKGNEINRLRNRYARQLDTAMKTLSDKLSTIV  61

Query  66   DGFPRLQDIHPFHKDLMNTLYDADHFRIALGQVSTAKHLIETVSRDYVRLIKYAQSLFQC  125
            + FP L ++HPF+++L++ +   D ++ +LGQV+TA+ +I  + ++Y  L+K +    + 
Sbjct  62   EKFPNLDELHPFYRELLDAVAGKDEYKKSLGQVNTARKIIRKIGKEYANLLKKSGDKKEA  121

Query  126  KQLKRAALGRMATICRRLKDPLVYLEQVRQHLGRLPSID  164
            ++L+R A GR+A++ R++   L +LE + + L +LP ID
Sbjct  122  EELRREAFGRVASVLRKIGPCLDFLEDIAKKLRKLPVID  160


>CDD:462381 pfam08155, NOGCT, NOGCT (NUC087) domain.  This C terminal domain 
is found in the NOG subfamily of nucleolar GTP-binding proteins.
Length=51

 Score = 123 bits (312),  Expect = 9e-35, Method: Composition-based stats.
 Identities = 37/51 (73%), Positives = 45/51 (88%), Gaps = 0/51 (0%)

Query  404  ERDIEEENGGAGVYNIDLKKNYTLADDEWKHDKIPEVWNGKNIYDFVDPDI  454
            ERD+EEENGGAGVYN+DLKK Y L + EWK+D IPE+W+GKN+ DF+DPDI
Sbjct  1    ERDLEEENGGAGVYNVDLKKKYDLKNPEWKYDIIPEIWDGKNVADFIDPDI  51


>CDD:462021 pfam06858, NOG1, Nucleolar GTP-binding protein 1 (NOG1).  This 
family represents a conserved region of approximately 60 residues 
in length within nucleolar GTP-binding protein 1 (NOG1). 
In S. cerevisiae, the NOG1 gene has been shown to be essential 
for cell viability, suggesting that NOG1 may play an 
important role in nucleolar functions. Family members include 
eukaryotic, bacterial and archaeal proteins.
Length=58

 Score = 113 bits (285),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 34/58 (59%), Positives = 45/58 (78%), Gaps = 0/58 (0%)

Query  234  TIEMQSITAIAHLRSAILYFMDLSEQCGYSVADQIKLFHSIRPLFANKIVFLVVNKID  291
             IEMQ+I A+AHL  A+L+ +D SE CGYS+ +Q+ LF  I+PLFANK V +V+NKID
Sbjct  1    EIEMQAIAALAHLADAVLFVIDPSETCGYSLEEQLSLFEEIKPLFANKPVIVVLNKID  58


>CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase.  The full-length 
GTPase protein is required for the complete activity of 
the protein of interacting with the 50S ribosome and binding 
of both adenine and guanine nucleotides, with a preference 
for guanine nucleotide.
Length=113

 Score = 76.9 bits (190),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 53/119 (45%), Gaps = 10/119 (8%)

Query  172  ICGYPNVGKSSFLRSITRADVDVQPYAFTTKSLFVGHFDYKYLRFQAIDTPGILDHPLEE  231
            + G PNVGKS+ + ++T A   V  Y  TT+    G  + K  +   +DTPG+++   E 
Sbjct  4    LVGRPNVGKSTLINALTGAKAIVSDYPGTTRDPNEGRLELKGKQIILVDTPGLIEGASEG  63

Query  232  MNTIEMQSITAIAHLRS-AILYFMDLSEQCGYSVADQIKLFHSIRPLFANKIVFLVVNK  289
                E      +A + +  IL+ +D  E     +    +    +      K + LV+NK
Sbjct  64   ----EGLGRAFLAIIEADLILFVVDSEEG----ITPLDEELLELL-RENKKPIILVLNK  113



Lambda      K        H        a         alpha
   0.318    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00018151

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436080 pfam17835, NOG1_N, NOG1 N-terminal helical domain. Thi...  166     5e-49
CDD:462381 pfam08155, NOGCT, NOGCT (NUC087) domain. This C termin...  123     9e-35
CDD:462021 pfam06858, NOG1, Nucleolar GTP-binding protein 1 (NOG1...  113     4e-31
CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The ...  76.9    1e-17


>CDD:436080 pfam17835, NOG1_N, NOG1 N-terminal helical domain.  This domain 
is found at the N-terminus of NOG1 GTPase proteins.
Length=160

 Score = 166 bits (423),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 54/159 (34%), Positives = 101/159 (64%), Gaps = 0/159 (0%)

Query  6    KDIPPVPTNQEFLDIVLSRTQRQLPTQIRAGFKISRIRGFYTRKVKYTQETFCEKFQAIL  65
            + IP VPT++E +D  L R +R  PT  + G +I+R+R  Y R++    +T  +K   I+
Sbjct  2    EKIPIVPTSEELIDSALRRAKRIGPTTKKKGNEINRLRNRYARQLDTAMKTLSDKLSTIV  61

Query  66   DGFPRLQDIHPFHKDLMNTLYDADHFRIALGQVSTAKHLIETVSRDYVRLIKYAQSLFQC  125
            + FP L ++HPF+++L++ +   D ++ +LGQV+TA+ +I  + ++Y  L+K +    + 
Sbjct  62   EKFPNLDELHPFYRELLDAVAGKDEYKKSLGQVNTARKIIRKIGKEYANLLKKSGDKKEA  121

Query  126  KQLKRAALGRMATICRRLKDPLVYLEQVRQHLGRLPSID  164
            ++L+R A GR+A++ R++   L +LE + + L +LP ID
Sbjct  122  EELRREAFGRVASVLRKIGPCLDFLEDIAKKLRKLPVID  160


>CDD:462381 pfam08155, NOGCT, NOGCT (NUC087) domain.  This C terminal domain 
is found in the NOG subfamily of nucleolar GTP-binding proteins.
Length=51

 Score = 123 bits (312),  Expect = 9e-35, Method: Composition-based stats.
 Identities = 37/51 (73%), Positives = 45/51 (88%), Gaps = 0/51 (0%)

Query  404  ERDIEEENGGAGVYNIDLKKNYTLADDEWKHDKIPEVWNGKNIYDFVDPDI  454
            ERD+EEENGGAGVYN+DLKK Y L + EWK+D IPE+W+GKN+ DF+DPDI
Sbjct  1    ERDLEEENGGAGVYNVDLKKKYDLKNPEWKYDIIPEIWDGKNVADFIDPDI  51


>CDD:462021 pfam06858, NOG1, Nucleolar GTP-binding protein 1 (NOG1).  This 
family represents a conserved region of approximately 60 residues 
in length within nucleolar GTP-binding protein 1 (NOG1). 
In S. cerevisiae, the NOG1 gene has been shown to be essential 
for cell viability, suggesting that NOG1 may play an 
important role in nucleolar functions. Family members include 
eukaryotic, bacterial and archaeal proteins.
Length=58

 Score = 113 bits (285),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 34/58 (59%), Positives = 45/58 (78%), Gaps = 0/58 (0%)

Query  234  TIEMQSITAIAHLRSAILYFMDLSEQCGYSVADQIKLFHSIRPLFANKIVFLVVNKID  291
             IEMQ+I A+AHL  A+L+ +D SE CGYS+ +Q+ LF  I+PLFANK V +V+NKID
Sbjct  1    EIEMQAIAALAHLADAVLFVIDPSETCGYSLEEQLSLFEEIKPLFANKPVIVVLNKID  58


>CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase.  The full-length 
GTPase protein is required for the complete activity of 
the protein of interacting with the 50S ribosome and binding 
of both adenine and guanine nucleotides, with a preference 
for guanine nucleotide.
Length=113

 Score = 76.9 bits (190),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 53/119 (45%), Gaps = 10/119 (8%)

Query  172  ICGYPNVGKSSFLRSITRADVDVQPYAFTTKSLFVGHFDYKYLRFQAIDTPGILDHPLEE  231
            + G PNVGKS+ + ++T A   V  Y  TT+    G  + K  +   +DTPG+++   E 
Sbjct  4    LVGRPNVGKSTLINALTGAKAIVSDYPGTTRDPNEGRLELKGKQIILVDTPGLIEGASEG  63

Query  232  MNTIEMQSITAIAHLRS-AILYFMDLSEQCGYSVADQIKLFHSIRPLFANKIVFLVVNK  289
                E      +A + +  IL+ +D  E     +    +    +      K + LV+NK
Sbjct  64   ----EGLGRAFLAIIEADLILFVVDSEEG----ITPLDEELLELL-RENKKPIILVLNK  113



Lambda      K        H        a         alpha
   0.318    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00018152

Length=108
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463953 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) d...  64.2    4e-15
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  56.7    1e-12


>CDD:463953 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. 
 This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=128

 Score = 64.2 bits (157),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query  12   VVTENGETIGHDEYGSTIAIHSLAVLPEHQGKQVGSTLMKSYIQRIREAAIAE-RISIIA  70
            V  E G+ +G         I  L V P++QG+ +G  L+++      +  I    +++ A
Sbjct  35   VAFEGGQIVGVIALRDRGHISLLFVDPDYQGQGIGKALLEAVEDYAEKDGIKLSELTVNA  94

Query  71   HDHLVPFYQSFGFENRGPSKCQFGGGGWTDLVLEF  105
              + VPFY+  GF   GP   +F G  +  +  E 
Sbjct  95   SPYAVPFYEKLGFRATGPE-QEFNGIRFVPMEKEL  128


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 56.7 bits (137),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 17/78 (22%), Positives = 36/78 (46%), Gaps = 6/78 (8%)

Query  12  VVTENGETIG-----HDEYGSTIAIHSLAVLPEHQGKQVGSTLMKSYIQRIREAAIAERI  66
           V  ++G+ +G       +    +A   LAV PE++G+ +G  L++   +   +    + +
Sbjct  7   VAEDDGKIVGFAALLPLDDEGALAELRLAVHPEYRGQGIGRALLE-AAEAAAKEGGIKLL  65

Query  67  SIIAHDHLVPFYQSFGFE  84
            +   +    FY+  GFE
Sbjct  66  ELETTNRAAAFYEKLGFE  83



Lambda      K        H        a         alpha
   0.319    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00018153

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463953 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) d...  66.5    2e-14
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  59.8    2e-12


>CDD:463953 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. 
 This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=128

 Score = 66.5 bits (163),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query  186  VVTENGETIGHDEYGSTIAIHSLAVLPEHQGKQVGSTLMKSYIQRIREAAIAE-RISIIA  244
            V  E G+ +G         I  L V P++QG+ +G  L+++      +  I    +++ A
Sbjct  35   VAFEGGQIVGVIALRDRGHISLLFVDPDYQGQGIGKALLEAVEDYAEKDGIKLSELTVNA  94

Query  245  HDHLVPFYQSFGFENRGPSKCQFGGGGWTDLVLEF  279
              + VPFY+  GF   GP   +F G  +  +  E 
Sbjct  95   SPYAVPFYEKLGFRATGPE-QEFNGIRFVPMEKEL  128


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 59.8 bits (145),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 17/78 (22%), Positives = 36/78 (46%), Gaps = 6/78 (8%)

Query  186  VVTENGETIG-----HDEYGSTIAIHSLAVLPEHQGKQVGSTLMKSYIQRIREAAIAERI  240
            V  ++G+ +G       +    +A   LAV PE++G+ +G  L++   +   +    + +
Sbjct  7    VAEDDGKIVGFAALLPLDDEGALAELRLAVHPEYRGQGIGRALLE-AAEAAAKEGGIKLL  65

Query  241  SIIAHDHLVPFYQSFGFE  258
             +   +    FY+  GFE
Sbjct  66   ELETTNRAAAFYEKLGFE  83



Lambda      K        H        a         alpha
   0.316    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00012190

Length=117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463953 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) d...  63.4    1e-14
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  56.7    2e-12


>CDD:463953 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. 
 This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=128

 Score = 63.4 bits (155),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query  12   VVTENGETIGHDEYGSTIAIHSLAVLPEHQGKQVGSTLMKSYIQRIREAAIAE-RISIIA  70
            V  E G+ +G         I  L V P++QG+ +G  L+++      +  I    +++ A
Sbjct  35   VAFEGGQIVGVIALRDRGHISLLFVDPDYQGQGIGKALLEAVEDYAEKDGIKLSELTVNA  94

Query  71   HDHLVPFYQSFGFENRGPSKCQFGG  95
              + VPFY+  GF   GP   +F G
Sbjct  95   SPYAVPFYEKLGFRATGPE-QEFNG  118


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 56.7 bits (137),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 17/78 (22%), Positives = 36/78 (46%), Gaps = 6/78 (8%)

Query  12  VVTENGETIG-----HDEYGSTIAIHSLAVLPEHQGKQVGSTLMKSYIQRIREAAIAERI  66
           V  ++G+ +G       +    +A   LAV PE++G+ +G  L++   +   +    + +
Sbjct  7   VAEDDGKIVGFAALLPLDDEGALAELRLAVHPEYRGQGIGRALLE-AAEAAAKEGGIKLL  65

Query  67  SIIAHDHLVPFYQSFGFE  84
            +   +    FY+  GFE
Sbjct  66  ELETTNRAAAFYEKLGFE  83



Lambda      K        H        a         alpha
   0.320    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00012191

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463953 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) d...  66.5    2e-14
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  59.8    2e-12


>CDD:463953 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. 
 This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=128

 Score = 66.5 bits (163),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query  186  VVTENGETIGHDEYGSTIAIHSLAVLPEHQGKQVGSTLMKSYIQRIREAAIAE-RISIIA  244
            V  E G+ +G         I  L V P++QG+ +G  L+++      +  I    +++ A
Sbjct  35   VAFEGGQIVGVIALRDRGHISLLFVDPDYQGQGIGKALLEAVEDYAEKDGIKLSELTVNA  94

Query  245  HDHLVPFYQSFGFENRGPSKCQFGGGGWTDLVLEF  279
              + VPFY+  GF   GP   +F G  +  +  E 
Sbjct  95   SPYAVPFYEKLGFRATGPE-QEFNGIRFVPMEKEL  128


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 59.8 bits (145),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 17/78 (22%), Positives = 36/78 (46%), Gaps = 6/78 (8%)

Query  186  VVTENGETIG-----HDEYGSTIAIHSLAVLPEHQGKQVGSTLMKSYIQRIREAAIAERI  240
            V  ++G+ +G       +    +A   LAV PE++G+ +G  L++   +   +    + +
Sbjct  7    VAEDDGKIVGFAALLPLDDEGALAELRLAVHPEYRGQGIGRALLE-AAEAAAKEGGIKLL  65

Query  241  SIIAHDHLVPFYQSFGFE  258
             +   +    FY+  GFE
Sbjct  66   ELETTNRAAAFYEKLGFE  83



Lambda      K        H        a         alpha
   0.316    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00018154

Length=255


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 277421980


Query= TCONS_00018155

Length=108
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463953 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) d...  64.2    4e-15
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  56.7    1e-12


>CDD:463953 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. 
 This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=128

 Score = 64.2 bits (157),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query  12   VVTENGETIGHDEYGSTIAIHSLAVLPEHQGKQVGSTLMKSYIQRIREAAIAE-RISIIA  70
            V  E G+ +G         I  L V P++QG+ +G  L+++      +  I    +++ A
Sbjct  35   VAFEGGQIVGVIALRDRGHISLLFVDPDYQGQGIGKALLEAVEDYAEKDGIKLSELTVNA  94

Query  71   HDHLVPFYQSFGFENRGPSKCQFGGGGWTDLVLEF  105
              + VPFY+  GF   GP   +F G  +  +  E 
Sbjct  95   SPYAVPFYEKLGFRATGPE-QEFNGIRFVPMEKEL  128


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 56.7 bits (137),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 17/78 (22%), Positives = 36/78 (46%), Gaps = 6/78 (8%)

Query  12  VVTENGETIG-----HDEYGSTIAIHSLAVLPEHQGKQVGSTLMKSYIQRIREAAIAERI  66
           V  ++G+ +G       +    +A   LAV PE++G+ +G  L++   +   +    + +
Sbjct  7   VAEDDGKIVGFAALLPLDDEGALAELRLAVHPEYRGQGIGRALLE-AAEAAAKEGGIKLL  65

Query  67  SIIAHDHLVPFYQSFGFE  84
            +   +    FY+  GFE
Sbjct  66  ELETTNRAAAFYEKLGFE  83



Lambda      K        H        a         alpha
   0.319    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00012195

Length=662
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436080 pfam17835, NOG1_N, NOG1 N-terminal helical domain. Thi...  167     4e-49
CDD:462381 pfam08155, NOGCT, NOGCT (NUC087) domain. This C termin...  123     7e-35
CDD:462021 pfam06858, NOG1, Nucleolar GTP-binding protein 1 (NOG1...  112     7e-31
CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The ...  76.9    2e-17


>CDD:436080 pfam17835, NOG1_N, NOG1 N-terminal helical domain.  This domain 
is found at the N-terminus of NOG1 GTPase proteins.
Length=160

 Score = 167 bits (424),  Expect = 4e-49, Method: Composition-based stats.
 Identities = 54/159 (34%), Positives = 101/159 (64%), Gaps = 0/159 (0%)

Query  6    KDIPPVPTNQEFLDIVLSRTQRQLPTQIRAGFKISRIRGFYTRKVKYTQETFCEKFQAIL  65
            + IP VPT++E +D  L R +R  PT  + G +I+R+R  Y R++    +T  +K   I+
Sbjct  2    EKIPIVPTSEELIDSALRRAKRIGPTTKKKGNEINRLRNRYARQLDTAMKTLSDKLSTIV  61

Query  66   DGFPRLQDIHPFHKDLMNTLYDADHFRIALGQVSTAKHLIETVSRDYVRLIKYAQSLFQC  125
            + FP L ++HPF+++L++ +   D ++ +LGQV+TA+ +I  + ++Y  L+K +    + 
Sbjct  62   EKFPNLDELHPFYRELLDAVAGKDEYKKSLGQVNTARKIIRKIGKEYANLLKKSGDKKEA  121

Query  126  KQLKRAALGRMATICRRLKDPLVYLEQVRQHLGRLPSID  164
            ++L+R A GR+A++ R++   L +LE + + L +LP ID
Sbjct  122  EELRREAFGRVASVLRKIGPCLDFLEDIAKKLRKLPVID  160


>CDD:462381 pfam08155, NOGCT, NOGCT (NUC087) domain.  This C terminal domain 
is found in the NOG subfamily of nucleolar GTP-binding proteins.
Length=51

 Score = 123 bits (312),  Expect = 7e-35, Method: Composition-based stats.
 Identities = 37/51 (73%), Positives = 45/51 (88%), Gaps = 0/51 (0%)

Query  404  ERDIEEENGGAGVYNIDLKKNYTLADDEWKHDKIPEVWNGKNIYDFVDPDI  454
            ERD+EEENGGAGVYN+DLKK Y L + EWK+D IPE+W+GKN+ DF+DPDI
Sbjct  1    ERDLEEENGGAGVYNVDLKKKYDLKNPEWKYDIIPEIWDGKNVADFIDPDI  51


>CDD:462021 pfam06858, NOG1, Nucleolar GTP-binding protein 1 (NOG1).  This 
family represents a conserved region of approximately 60 residues 
in length within nucleolar GTP-binding protein 1 (NOG1). 
In S. cerevisiae, the NOG1 gene has been shown to be essential 
for cell viability, suggesting that NOG1 may play an 
important role in nucleolar functions. Family members include 
eukaryotic, bacterial and archaeal proteins.
Length=58

 Score = 112 bits (284),  Expect = 7e-31, Method: Composition-based stats.
 Identities = 34/58 (59%), Positives = 45/58 (78%), Gaps = 0/58 (0%)

Query  234  TIEMQSITAIAHLRSAILYFMDLSEQCGYSVADQIKLFHSIRPLFANKIVFLVVNKID  291
             IEMQ+I A+AHL  A+L+ +D SE CGYS+ +Q+ LF  I+PLFANK V +V+NKID
Sbjct  1    EIEMQAIAALAHLADAVLFVIDPSETCGYSLEEQLSLFEEIKPLFANKPVIVVLNKID  58


>CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase.  The full-length 
GTPase protein is required for the complete activity of 
the protein of interacting with the 50S ribosome and binding 
of both adenine and guanine nucleotides, with a preference 
for guanine nucleotide.
Length=113

 Score = 76.9 bits (190),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 53/119 (45%), Gaps = 10/119 (8%)

Query  172  ICGYPNVGKSSFLRSITRADVDVQPYAFTTKSLFVGHFDYKYLRFQAIDTPGILDHPLEE  231
            + G PNVGKS+ + ++T A   V  Y  TT+    G  + K  +   +DTPG+++   E 
Sbjct  4    LVGRPNVGKSTLINALTGAKAIVSDYPGTTRDPNEGRLELKGKQIILVDTPGLIEGASEG  63

Query  232  MNTIEMQSITAIAHLRS-AILYFMDLSEQCGYSVADQIKLFHSIRPLFANKIVFLVVNK  289
                E      +A + +  IL+ +D  E     +    +    +      K + LV+NK
Sbjct  64   ----EGLGRAFLAIIEADLILFVVDSEEG----ITPLDEELLELL-RENKKPIILVLNK  113



Lambda      K        H        a         alpha
   0.319    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 839155510


Query= TCONS_00012196

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436080 pfam17835, NOG1_N, NOG1 N-terminal helical domain. Thi...  166     5e-49
CDD:462381 pfam08155, NOGCT, NOGCT (NUC087) domain. This C termin...  123     9e-35
CDD:462021 pfam06858, NOG1, Nucleolar GTP-binding protein 1 (NOG1...  113     4e-31
CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The ...  76.9    1e-17


>CDD:436080 pfam17835, NOG1_N, NOG1 N-terminal helical domain.  This domain 
is found at the N-terminus of NOG1 GTPase proteins.
Length=160

 Score = 166 bits (423),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 54/159 (34%), Positives = 101/159 (64%), Gaps = 0/159 (0%)

Query  6    KDIPPVPTNQEFLDIVLSRTQRQLPTQIRAGFKISRIRGFYTRKVKYTQETFCEKFQAIL  65
            + IP VPT++E +D  L R +R  PT  + G +I+R+R  Y R++    +T  +K   I+
Sbjct  2    EKIPIVPTSEELIDSALRRAKRIGPTTKKKGNEINRLRNRYARQLDTAMKTLSDKLSTIV  61

Query  66   DGFPRLQDIHPFHKDLMNTLYDADHFRIALGQVSTAKHLIETVSRDYVRLIKYAQSLFQC  125
            + FP L ++HPF+++L++ +   D ++ +LGQV+TA+ +I  + ++Y  L+K +    + 
Sbjct  62   EKFPNLDELHPFYRELLDAVAGKDEYKKSLGQVNTARKIIRKIGKEYANLLKKSGDKKEA  121

Query  126  KQLKRAALGRMATICRRLKDPLVYLEQVRQHLGRLPSID  164
            ++L+R A GR+A++ R++   L +LE + + L +LP ID
Sbjct  122  EELRREAFGRVASVLRKIGPCLDFLEDIAKKLRKLPVID  160


>CDD:462381 pfam08155, NOGCT, NOGCT (NUC087) domain.  This C terminal domain 
is found in the NOG subfamily of nucleolar GTP-binding proteins.
Length=51

 Score = 123 bits (312),  Expect = 9e-35, Method: Composition-based stats.
 Identities = 37/51 (73%), Positives = 45/51 (88%), Gaps = 0/51 (0%)

Query  404  ERDIEEENGGAGVYNIDLKKNYTLADDEWKHDKIPEVWNGKNIYDFVDPDI  454
            ERD+EEENGGAGVYN+DLKK Y L + EWK+D IPE+W+GKN+ DF+DPDI
Sbjct  1    ERDLEEENGGAGVYNVDLKKKYDLKNPEWKYDIIPEIWDGKNVADFIDPDI  51


>CDD:462021 pfam06858, NOG1, Nucleolar GTP-binding protein 1 (NOG1).  This 
family represents a conserved region of approximately 60 residues 
in length within nucleolar GTP-binding protein 1 (NOG1). 
In S. cerevisiae, the NOG1 gene has been shown to be essential 
for cell viability, suggesting that NOG1 may play an 
important role in nucleolar functions. Family members include 
eukaryotic, bacterial and archaeal proteins.
Length=58

 Score = 113 bits (285),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 34/58 (59%), Positives = 45/58 (78%), Gaps = 0/58 (0%)

Query  234  TIEMQSITAIAHLRSAILYFMDLSEQCGYSVADQIKLFHSIRPLFANKIVFLVVNKID  291
             IEMQ+I A+AHL  A+L+ +D SE CGYS+ +Q+ LF  I+PLFANK V +V+NKID
Sbjct  1    EIEMQAIAALAHLADAVLFVIDPSETCGYSLEEQLSLFEEIKPLFANKPVIVVLNKID  58


>CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase.  The full-length 
GTPase protein is required for the complete activity of 
the protein of interacting with the 50S ribosome and binding 
of both adenine and guanine nucleotides, with a preference 
for guanine nucleotide.
Length=113

 Score = 76.9 bits (190),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 53/119 (45%), Gaps = 10/119 (8%)

Query  172  ICGYPNVGKSSFLRSITRADVDVQPYAFTTKSLFVGHFDYKYLRFQAIDTPGILDHPLEE  231
            + G PNVGKS+ + ++T A   V  Y  TT+    G  + K  +   +DTPG+++   E 
Sbjct  4    LVGRPNVGKSTLINALTGAKAIVSDYPGTTRDPNEGRLELKGKQIILVDTPGLIEGASEG  63

Query  232  MNTIEMQSITAIAHLRS-AILYFMDLSEQCGYSVADQIKLFHSIRPLFANKIVFLVVNK  289
                E      +A + +  IL+ +D  E     +    +    +      K + LV+NK
Sbjct  64   ----EGLGRAFLAIIEADLILFVVDSEEG----ITPLDEELLELL-RENKKPIILVLNK  113



Lambda      K        H        a         alpha
   0.318    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00012197

Length=662
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436080 pfam17835, NOG1_N, NOG1 N-terminal helical domain. Thi...  167     4e-49
CDD:462381 pfam08155, NOGCT, NOGCT (NUC087) domain. This C termin...  123     7e-35
CDD:462021 pfam06858, NOG1, Nucleolar GTP-binding protein 1 (NOG1...  112     7e-31
CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The ...  76.9    2e-17


>CDD:436080 pfam17835, NOG1_N, NOG1 N-terminal helical domain.  This domain 
is found at the N-terminus of NOG1 GTPase proteins.
Length=160

 Score = 167 bits (424),  Expect = 4e-49, Method: Composition-based stats.
 Identities = 54/159 (34%), Positives = 101/159 (64%), Gaps = 0/159 (0%)

Query  6    KDIPPVPTNQEFLDIVLSRTQRQLPTQIRAGFKISRIRGFYTRKVKYTQETFCEKFQAIL  65
            + IP VPT++E +D  L R +R  PT  + G +I+R+R  Y R++    +T  +K   I+
Sbjct  2    EKIPIVPTSEELIDSALRRAKRIGPTTKKKGNEINRLRNRYARQLDTAMKTLSDKLSTIV  61

Query  66   DGFPRLQDIHPFHKDLMNTLYDADHFRIALGQVSTAKHLIETVSRDYVRLIKYAQSLFQC  125
            + FP L ++HPF+++L++ +   D ++ +LGQV+TA+ +I  + ++Y  L+K +    + 
Sbjct  62   EKFPNLDELHPFYRELLDAVAGKDEYKKSLGQVNTARKIIRKIGKEYANLLKKSGDKKEA  121

Query  126  KQLKRAALGRMATICRRLKDPLVYLEQVRQHLGRLPSID  164
            ++L+R A GR+A++ R++   L +LE + + L +LP ID
Sbjct  122  EELRREAFGRVASVLRKIGPCLDFLEDIAKKLRKLPVID  160


>CDD:462381 pfam08155, NOGCT, NOGCT (NUC087) domain.  This C terminal domain 
is found in the NOG subfamily of nucleolar GTP-binding proteins.
Length=51

 Score = 123 bits (312),  Expect = 7e-35, Method: Composition-based stats.
 Identities = 37/51 (73%), Positives = 45/51 (88%), Gaps = 0/51 (0%)

Query  404  ERDIEEENGGAGVYNIDLKKNYTLADDEWKHDKIPEVWNGKNIYDFVDPDI  454
            ERD+EEENGGAGVYN+DLKK Y L + EWK+D IPE+W+GKN+ DF+DPDI
Sbjct  1    ERDLEEENGGAGVYNVDLKKKYDLKNPEWKYDIIPEIWDGKNVADFIDPDI  51


>CDD:462021 pfam06858, NOG1, Nucleolar GTP-binding protein 1 (NOG1).  This 
family represents a conserved region of approximately 60 residues 
in length within nucleolar GTP-binding protein 1 (NOG1). 
In S. cerevisiae, the NOG1 gene has been shown to be essential 
for cell viability, suggesting that NOG1 may play an 
important role in nucleolar functions. Family members include 
eukaryotic, bacterial and archaeal proteins.
Length=58

 Score = 112 bits (284),  Expect = 7e-31, Method: Composition-based stats.
 Identities = 34/58 (59%), Positives = 45/58 (78%), Gaps = 0/58 (0%)

Query  234  TIEMQSITAIAHLRSAILYFMDLSEQCGYSVADQIKLFHSIRPLFANKIVFLVVNKID  291
             IEMQ+I A+AHL  A+L+ +D SE CGYS+ +Q+ LF  I+PLFANK V +V+NKID
Sbjct  1    EIEMQAIAALAHLADAVLFVIDPSETCGYSLEEQLSLFEEIKPLFANKPVIVVLNKID  58


>CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase.  The full-length 
GTPase protein is required for the complete activity of 
the protein of interacting with the 50S ribosome and binding 
of both adenine and guanine nucleotides, with a preference 
for guanine nucleotide.
Length=113

 Score = 76.9 bits (190),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 53/119 (45%), Gaps = 10/119 (8%)

Query  172  ICGYPNVGKSSFLRSITRADVDVQPYAFTTKSLFVGHFDYKYLRFQAIDTPGILDHPLEE  231
            + G PNVGKS+ + ++T A   V  Y  TT+    G  + K  +   +DTPG+++   E 
Sbjct  4    LVGRPNVGKSTLINALTGAKAIVSDYPGTTRDPNEGRLELKGKQIILVDTPGLIEGASEG  63

Query  232  MNTIEMQSITAIAHLRS-AILYFMDLSEQCGYSVADQIKLFHSIRPLFANKIVFLVVNK  289
                E      +A + +  IL+ +D  E     +    +    +      K + LV+NK
Sbjct  64   ----EGLGRAFLAIIEADLILFVVDSEEG----ITPLDEELLELL-RENKKPIILVLNK  113



Lambda      K        H        a         alpha
   0.319    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 839155510


Query= TCONS_00012198

Length=650
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436080 pfam17835, NOG1_N, NOG1 N-terminal helical domain. Thi...  129     2e-35
CDD:462381 pfam08155, NOGCT, NOGCT (NUC087) domain. This C termin...  124     5e-35
CDD:462021 pfam06858, NOG1, Nucleolar GTP-binding protein 1 (NOG1...  113     5e-31
CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The ...  77.3    1e-17


>CDD:436080 pfam17835, NOG1_N, NOG1 N-terminal helical domain.  This domain 
is found at the N-terminus of NOG1 GTPase proteins.
Length=160

 Score = 129 bits (326),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 38/120 (32%), Positives = 76/120 (63%), Gaps = 0/120 (0%)

Query  40   FYTRKVKYTQETFCEKFQAILDGFPRLQDIHPFHKDLMNTLYDADHFRIALGQVSTAKHL  99
             Y R++    +T  +K   I++ FP L ++HPF+++L++ +   D ++ +LGQV+TA+ +
Sbjct  41   RYARQLDTAMKTLSDKLSTIVEKFPNLDELHPFYRELLDAVAGKDEYKKSLGQVNTARKI  100

Query  100  IETVSRDYVRLIKYAQSLFQCKQLKRAALGRMATICRRLKDPLVYLEQVRQHLGRLPSID  159
            I  + ++Y  L+K +    + ++L+R A GR+A++ R++   L +LE + + L +LP ID
Sbjct  101  IRKIGKEYANLLKKSGDKKEAEELRREAFGRVASVLRKIGPCLDFLEDIAKKLRKLPVID  160


>CDD:462381 pfam08155, NOGCT, NOGCT (NUC087) domain.  This C terminal domain 
is found in the NOG subfamily of nucleolar GTP-binding proteins.
Length=51

 Score = 124 bits (314),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 37/51 (73%), Positives = 45/51 (88%), Gaps = 0/51 (0%)

Query  399  ERDIEEENGGAGVYNIDLKKNYTLADDEWKHDKIPEVWNGKNIYDFVDPDI  449
            ERD+EEENGGAGVYN+DLKK Y L + EWK+D IPE+W+GKN+ DF+DPDI
Sbjct  1    ERDLEEENGGAGVYNVDLKKKYDLKNPEWKYDIIPEIWDGKNVADFIDPDI  51


>CDD:462021 pfam06858, NOG1, Nucleolar GTP-binding protein 1 (NOG1).  This 
family represents a conserved region of approximately 60 residues 
in length within nucleolar GTP-binding protein 1 (NOG1). 
In S. cerevisiae, the NOG1 gene has been shown to be essential 
for cell viability, suggesting that NOG1 may play an 
important role in nucleolar functions. Family members include 
eukaryotic, bacterial and archaeal proteins.
Length=58

 Score = 113 bits (285),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 34/58 (59%), Positives = 45/58 (78%), Gaps = 0/58 (0%)

Query  229  TIEMQSITAIAHLRSAILYFMDLSEQCGYSVADQIKLFHSIRPLFANKIVFLVVNKID  286
             IEMQ+I A+AHL  A+L+ +D SE CGYS+ +Q+ LF  I+PLFANK V +V+NKID
Sbjct  1    EIEMQAIAALAHLADAVLFVIDPSETCGYSLEEQLSLFEEIKPLFANKPVIVVLNKID  58


>CDD:460387 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase.  The full-length 
GTPase protein is required for the complete activity of 
the protein of interacting with the 50S ribosome and binding 
of both adenine and guanine nucleotides, with a preference 
for guanine nucleotide.
Length=113

 Score = 77.3 bits (191),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 53/119 (45%), Gaps = 10/119 (8%)

Query  167  ICGYPNVGKSSFLRSITRADVDVQPYAFTTKSLFVGHFDYKYLRFQAIDTPGILDHPLEE  226
            + G PNVGKS+ + ++T A   V  Y  TT+    G  + K  +   +DTPG+++   E 
Sbjct  4    LVGRPNVGKSTLINALTGAKAIVSDYPGTTRDPNEGRLELKGKQIILVDTPGLIEGASEG  63

Query  227  MNTIEMQSITAIAHLRS-AILYFMDLSEQCGYSVADQIKLFHSIRPLFANKIVFLVVNK  284
                E      +A + +  IL+ +D  E     +    +    +      K + LV+NK
Sbjct  64   ----EGLGRAFLAIIEADLILFVVDSEEG----ITPLDEELLELL-RENKKPIILVLNK  113



Lambda      K        H        a         alpha
   0.318    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 821458030


Query= TCONS_00012200

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  138     1e-40
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  83.2    2e-19


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 138 bits (350),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 7/195 (4%)

Query  25   WAVVTGASDGLGKEFSLQLARAGFNIVLVSRTASKLTTLAEEITTKHSVQTKTLAMDYA-  83
             A+VTGAS G+G+  + +LA+ G  +VLV R+  KL  +A+E+      +   +  D   
Sbjct  2    VALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGA-LGGKALFIQGDVTD  60

Query  84   -ANNDADYEELKAIVDGLDVAVLINNVGKSHDIPTPFALTPEDEMTDIVTINCLGTLRTT  142
             A   A  E+    +  LD+  L+NN G       PF+   +++   ++ +N  G    T
Sbjct  61   RAQVKALVEQAVERLGRLDI--LVNNAG--ITGLGPFSELSDEDWERVIDVNLTGVFNLT  116

Query  143  QLIIPGMMQRKRGLVLTMGSFGGLLPTPLLATYSGSKAFLQQWSTSLGSELEPYGITVEL  202
            + ++P M++   G ++ + S  GL+P P  + YS SKA +  ++ SL  EL P+GI V  
Sbjct  117  RAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNA  176

Query  203  VQAYLITSAMSKVRR  217
            V    + + M+K  R
Sbjct  177  VAPGGVDTDMTKELR  191


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 83.2 bits (207),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 84/221 (38%), Gaps = 27/221 (12%)

Query  30   GASD--GLGKEFSLQLARAGFNIVLVSRTASKLTTLAEEITTKHSVQTKTLAMDYAANND  87
            GA++  G+G   +  LA  G  +VL       L    EE+  +       L  D    ++
Sbjct  1    GAANESGIGWAIARALAEEGAEVVLTDLNE-ALAKRVEELAEELGA--AVLPCD--VTDE  55

Query  88   ADYE----ELKAIVDGLDVAVLINNVGKSHDIPTPFALTPEDEMTDIVTINCLGTLRTTQ  143
               E            LD+  L+NN G +  +  PF  T  ++    + +N        +
Sbjct  56   EQVEALVAAAVEKFGRLDI--LVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAK  113

Query  144  LIIPGMMQRKRGLVLTMGSFGGLLPTPLLATYSGSKAFLQQWSTSLGSELEPYGITVELV  203
              +P +M+ + G ++ + S G     P    Y  +KA L+  +  L  EL P GI V  +
Sbjct  114  AALP-LMK-EGGSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAI  171

Query  204  QAYLITSAMSKVRRTSAT--IPDPRAFVKAVLSKI--GRNG  240
                I        +T A   IP     + A  ++   GR G
Sbjct  172  SPGPI--------KTLAASGIPGFDELLAAAEARAPLGRLG  204



Lambda      K        H        a         alpha
   0.316    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00012199

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00012201

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397044 pfam02744, GalP_UDP_tr_C, Galactose-1-phosphate uridyl...  165     2e-53
CDD:426039 pfam01087, GalP_UDP_transf, Galactose-1-phosphate urid...  78.5    3e-19


>CDD:397044 pfam02744, GalP_UDP_tr_C, Galactose-1-phosphate uridyl transferase, 
C-terminal domain.  SCOP reports fold duplication with 
N-terminal domain. Both involved in Zn and Fe binding.
Length=166

 Score = 165 bits (420),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 75/137 (55%), Positives = 94/137 (69%), Gaps = 3/137 (2%)

Query  45   ELEQMKKYRREHQNKHLLEDYAALESRKQERVVFENQAFLVVCPWWATWPFETMIVSKKH  104
            EL    KY   H    LL DY  +E  ++ERVV EN+++ VV P+WA WPFET+++ K+H
Sbjct  1    ELRSFPKYFAGH-GSILLHDYVQMELAEKERVVVENESWPVVVPYWAKWPFETLLLPKRH  59

Query  105  KRALVDLNENEKAQLAEAIAEITRRYDNLFETHFPYSMGIHQAPLEGTDEEIEASYLHLH  164
              +L +L + E+  LA  +  +TRRYDNLFET FPYSMGIHQAPL    EE+     H H
Sbjct  60   VPSLTELTDAEREDLAAILKPLTRRYDNLFETSFPYSMGIHQAPLNA--EELNHWQFHPH  117

Query  165  FYPPLLRSATVRKFLVG  181
            FYPPLLRSATVRKF+VG
Sbjct  118  FYPPLLRSATVRKFMVG  134


>CDD:426039 pfam01087, GalP_UDP_transf, Galactose-1-phosphate uridyl transferase, 
N-terminal domain.  SCOP reports fold duplication with 
C-terminal domain. Both involved in Zn and Fe binding.
Length=182

 Score = 78.5 bits (194),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 0/35 (0%)

Query  5    KEQYRYMQIFENKGAAMGCSNPHPHGQVWTTSSLP  39
                + +  FEN+G AMGCSNPHPHGQ+W +S LP
Sbjct  148  SSYPKCVLCFENEGYAMGCSNPHPHGQIWASSHLP  182



Lambda      K        H        a         alpha
   0.318    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00012202

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00012203

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            124     8e-32


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 124 bits (313),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 95/391 (24%), Positives = 151/391 (39%), Gaps = 48/391 (12%)

Query  68   LTILVSLTTLAIALISSAYSGGMAEVMKELDSSREVTTLGISLFVLGFAFGPLIWAPMSE  127
            L +   L  L  +L+  A    +AE   +L  S     L ++LF LG+A    +   +S+
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAE---DLGISPTEIGLLLTLFSLGYALAQPLAGRLSD  57

Query  128  VFGRRNVFTITFCLLTAFNAGCAGSGNIQTLIILRFLAGFFGSSPFGNAGGSIADMFPAA  187
             FGRR V  I   L          + ++  L++LR L G    + F  A   IAD FP  
Sbjct  58   RFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE  117

Query  188  KRGIAISLFSAAPLCGPAIGPIIGGFLGSGAGWRWVEGFLAIFSGVIWICLCVFLPETYA  247
            +RG A+ L SA    G A+GP++GG L S  GWR     LAI S +  + L +  P   +
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  248  PVLLRKRAEKLSELSGKVYRSKLDIERGKLSLQQTLTTALSRPWRLLFREPIVFLFCIYM  307
                     +LS                           L   W+ L R+P   L+ +  
Sbjct  178  KRPKPAEEARLS---------------------------LIVAWKALLRDP--VLWLLLA  208

Query  308  AIIYGILYLCFAAFPIVFQEARGWNEGIGGLAF-LGILVGMVIAVIYTFPENMHYAKLCR  366
             +++G  +     +  ++QE  G +  + GL   LG L+G +  ++              
Sbjct  209  LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGR-----------  257

Query  367  QTTGRLPPEVRLAPSIVGAIALPIGLFWFAWTNSPSIHWMVSIAAGAPFGFGLVLVFLSV  426
              + RL    RL  +++  I   +GL   + T S     +  +  G  FG     +   V
Sbjct  258  -LSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALV  316

Query  427  FNYLIDAYTIYSASVLAANSALRSLFGAAFP  457
             +    A      +     +   SL GA  P
Sbjct  317  SDL---APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00012204

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            105     9e-26


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 105 bits (265),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 93/390 (24%), Positives = 148/390 (38%), Gaps = 46/390 (12%)

Query  68   LTILVSLTTLAIALISSAYSGGMAEVMKELDSSREVTTLGISLFVLGFAFGPLIWAPMSE  127
            L +   L  L  +L+  A    +AE   +L  S     L ++LF LG+A    +   +S+
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAE---DLGISPTEIGLLLTLFSLGYALAQPLAGRLSD  57

Query  128  VFGRRNVFTITFCLLTAFNAGCAGSGNIQTLIILRFLAGFFGSSPFGNAGGSIADMFPAA  187
             FGRR V  I   L          + ++  L++LR L G    + F  A   IAD FP  
Sbjct  58   RFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE  117

Query  188  KRGIAISLFSAAPLCGPAIGPIIGGFLGSGAGWRWVEGFLAIFSGVIWICLCVFLPETYA  247
            +RG A+ L SA    G A+GP++GG L S  GWR     LAI S +  + L +  P   +
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  248  PVLLRKRAEKLSELSGKVYRSKLDIERGKLSLQQTLTTALSRPWRLLFREPIVFLFCIYM  307
                     +LS                           L   W+ L R+P   L+ +  
Sbjct  178  KRPKPAEEARLS---------------------------LIVAWKALLRDP--VLWLLLA  208

Query  308  AIIYGILYLCFAAFPIVFQEARGWNEGIGGLAFLGILVGMVIAVIYTFPENMHYAKLCRQ  367
             +++G  +     +  ++QE  G +  + GL      +   I  +           L  +
Sbjct  209  LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRL-----------LLGR  257

Query  368  TTGRLPPEVRLAPSIVGAIALPIGLFWFAWTNSPSIHWMVSIAAGAPFGFGLVLVFLSVF  427
             + RL    RL  +++  I   +GL   + T S     +  +  G  FG     +   V 
Sbjct  258  LSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVS  317

Query  428  NYLIDAYTIYSASVLAANSALRSLFGAAFP  457
            +    A      +     +   SL GA  P
Sbjct  318  DL---APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00012205

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            124     8e-32


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 124 bits (313),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 95/391 (24%), Positives = 151/391 (39%), Gaps = 48/391 (12%)

Query  68   LTILVSLTTLAIALISSAYSGGMAEVMKELDSSREVTTLGISLFVLGFAFGPLIWAPMSE  127
            L +   L  L  +L+  A    +AE   +L  S     L ++LF LG+A    +   +S+
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAE---DLGISPTEIGLLLTLFSLGYALAQPLAGRLSD  57

Query  128  VFGRRNVFTITFCLLTAFNAGCAGSGNIQTLIILRFLAGFFGSSPFGNAGGSIADMFPAA  187
             FGRR V  I   L          + ++  L++LR L G    + F  A   IAD FP  
Sbjct  58   RFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE  117

Query  188  KRGIAISLFSAAPLCGPAIGPIIGGFLGSGAGWRWVEGFLAIFSGVIWICLCVFLPETYA  247
            +RG A+ L SA    G A+GP++GG L S  GWR     LAI S +  + L +  P   +
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  248  PVLLRKRAEKLSELSGKVYRSKLDIERGKLSLQQTLTTALSRPWRLLFREPIVFLFCIYM  307
                     +LS                           L   W+ L R+P   L+ +  
Sbjct  178  KRPKPAEEARLS---------------------------LIVAWKALLRDP--VLWLLLA  208

Query  308  AIIYGILYLCFAAFPIVFQEARGWNEGIGGLAF-LGILVGMVIAVIYTFPENMHYAKLCR  366
             +++G  +     +  ++QE  G +  + GL   LG L+G +  ++              
Sbjct  209  LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGR-----------  257

Query  367  QTTGRLPPEVRLAPSIVGAIALPIGLFWFAWTNSPSIHWMVSIAAGAPFGFGLVLVFLSV  426
              + RL    RL  +++  I   +GL   + T S     +  +  G  FG     +   V
Sbjct  258  -LSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALV  316

Query  427  FNYLIDAYTIYSASVLAANSALRSLFGAAFP  457
             +    A      +     +   SL GA  P
Sbjct  317  SDL---APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00018156

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            110     3e-27


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 110 bits (276),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 95/391 (24%), Positives = 151/391 (39%), Gaps = 48/391 (12%)

Query  97   LTILVSLTTLAIALISSAYSGGMAEVMKELDSSREVTTLGISLFVLGFAFGPLIWAPMSE  156
            L +   L  L  +L+  A    +AE   +L  S     L ++LF LG+A    +   +S+
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAE---DLGISPTEIGLLLTLFSLGYALAQPLAGRLSD  57

Query  157  VFGRRNVFTITFCLLTAFNAGCAGSGNIQTLIILRFLAGFFGSSPFGNAGGSIADMFPAA  216
             FGRR V  I   L          + ++  L++LR L G    + F  A   IAD FP  
Sbjct  58   RFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE  117

Query  217  KRGIAISLFSAAPLCGPAIGPIIGGFLGSGAGWRWVEGFLAIFSGVIWICLCVFLPETYA  276
            +RG A+ L SA    G A+GP++GG L S  GWR     LAI S +  + L +  P   +
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  277  PVLLRKRAEKLSELSGKVYRSKLDIERGKLSLQQTLTTALSRPWRLLFREPIVFLFCIYM  336
                     +LS                           L   W+ L R+P   L+ +  
Sbjct  178  KRPKPAEEARLS---------------------------LIVAWKALLRDP--VLWLLLA  208

Query  337  AIIYGILYLCFAAFPIVFQEARGWNEGIGGLAF-LGILVGMVIAVIYTFPENMHYAKLCR  395
             +++G  +     +  ++QE  G +  + GL   LG L+G +  ++              
Sbjct  209  LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGR-----------  257

Query  396  QTTGRLPPEVRLAPSIVGAIALPIGLFWFAWTNSPSIHWMVSIAAGAPFGFGLVLVFLSV  455
              + RL    RL  +++  I   +GL   + T S     +  +  G  FG     +   V
Sbjct  258  -LSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALV  316

Query  456  FNYLIDAYTIYSASVLAANSALRSLFGAAFP  486
             +    A      +     +   SL GA  P
Sbjct  317  SDL---APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.142    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00018157

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            124     8e-32


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 124 bits (313),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 95/391 (24%), Positives = 151/391 (39%), Gaps = 48/391 (12%)

Query  68   LTILVSLTTLAIALISSAYSGGMAEVMKELDSSREVTTLGISLFVLGFAFGPLIWAPMSE  127
            L +   L  L  +L+  A    +AE   +L  S     L ++LF LG+A    +   +S+
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAE---DLGISPTEIGLLLTLFSLGYALAQPLAGRLSD  57

Query  128  VFGRRNVFTITFCLLTAFNAGCAGSGNIQTLIILRFLAGFFGSSPFGNAGGSIADMFPAA  187
             FGRR V  I   L          + ++  L++LR L G    + F  A   IAD FP  
Sbjct  58   RFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE  117

Query  188  KRGIAISLFSAAPLCGPAIGPIIGGFLGSGAGWRWVEGFLAIFSGVIWICLCVFLPETYA  247
            +RG A+ L SA    G A+GP++GG L S  GWR     LAI S +  + L +  P   +
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  248  PVLLRKRAEKLSELSGKVYRSKLDIERGKLSLQQTLTTALSRPWRLLFREPIVFLFCIYM  307
                     +LS                           L   W+ L R+P   L+ +  
Sbjct  178  KRPKPAEEARLS---------------------------LIVAWKALLRDP--VLWLLLA  208

Query  308  AIIYGILYLCFAAFPIVFQEARGWNEGIGGLAF-LGILVGMVIAVIYTFPENMHYAKLCR  366
             +++G  +     +  ++QE  G +  + GL   LG L+G +  ++              
Sbjct  209  LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGR-----------  257

Query  367  QTTGRLPPEVRLAPSIVGAIALPIGLFWFAWTNSPSIHWMVSIAAGAPFGFGLVLVFLSV  426
              + RL    RL  +++  I   +GL   + T S     +  +  G  FG     +   V
Sbjct  258  -LSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALV  316

Query  427  FNYLIDAYTIYSASVLAANSALRSLFGAAFP  457
             +    A      +     +   SL GA  P
Sbjct  317  SDL---APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00018158

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            105     9e-26


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 105 bits (265),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 93/390 (24%), Positives = 148/390 (38%), Gaps = 46/390 (12%)

Query  68   LTILVSLTTLAIALISSAYSGGMAEVMKELDSSREVTTLGISLFVLGFAFGPLIWAPMSE  127
            L +   L  L  +L+  A    +AE   +L  S     L ++LF LG+A    +   +S+
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAE---DLGISPTEIGLLLTLFSLGYALAQPLAGRLSD  57

Query  128  VFGRRNVFTITFCLLTAFNAGCAGSGNIQTLIILRFLAGFFGSSPFGNAGGSIADMFPAA  187
             FGRR V  I   L          + ++  L++LR L G    + F  A   IAD FP  
Sbjct  58   RFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE  117

Query  188  KRGIAISLFSAAPLCGPAIGPIIGGFLGSGAGWRWVEGFLAIFSGVIWICLCVFLPETYA  247
            +RG A+ L SA    G A+GP++GG L S  GWR     LAI S +  + L +  P   +
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  248  PVLLRKRAEKLSELSGKVYRSKLDIERGKLSLQQTLTTALSRPWRLLFREPIVFLFCIYM  307
                     +LS                           L   W+ L R+P   L+ +  
Sbjct  178  KRPKPAEEARLS---------------------------LIVAWKALLRDP--VLWLLLA  208

Query  308  AIIYGILYLCFAAFPIVFQEARGWNEGIGGLAFLGILVGMVIAVIYTFPENMHYAKLCRQ  367
             +++G  +     +  ++QE  G +  + GL      +   I  +           L  +
Sbjct  209  LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRL-----------LLGR  257

Query  368  TTGRLPPEVRLAPSIVGAIALPIGLFWFAWTNSPSIHWMVSIAAGAPFGFGLVLVFLSVF  427
             + RL    RL  +++  I   +GL   + T S     +  +  G  FG     +   V 
Sbjct  258  LSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVS  317

Query  428  NYLIDAYTIYSASVLAANSALRSLFGAAFP  457
            +    A      +     +   SL GA  P
Sbjct  318  DL---APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00018159

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.133    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00012206

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            105     9e-26


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 105 bits (265),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 93/390 (24%), Positives = 148/390 (38%), Gaps = 46/390 (12%)

Query  68   LTILVSLTTLAIALISSAYSGGMAEVMKELDSSREVTTLGISLFVLGFAFGPLIWAPMSE  127
            L +   L  L  +L+  A    +AE   +L  S     L ++LF LG+A    +   +S+
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAE---DLGISPTEIGLLLTLFSLGYALAQPLAGRLSD  57

Query  128  VFGRRNVFTITFCLLTAFNAGCAGSGNIQTLIILRFLAGFFGSSPFGNAGGSIADMFPAA  187
             FGRR V  I   L          + ++  L++LR L G    + F  A   IAD FP  
Sbjct  58   RFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE  117

Query  188  KRGIAISLFSAAPLCGPAIGPIIGGFLGSGAGWRWVEGFLAIFSGVIWICLCVFLPETYA  247
            +RG A+ L SA    G A+GP++GG L S  GWR     LAI S +  + L +  P   +
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  248  PVLLRKRAEKLSELSGKVYRSKLDIERGKLSLQQTLTTALSRPWRLLFREPIVFLFCIYM  307
                     +LS                           L   W+ L R+P   L+ +  
Sbjct  178  KRPKPAEEARLS---------------------------LIVAWKALLRDP--VLWLLLA  208

Query  308  AIIYGILYLCFAAFPIVFQEARGWNEGIGGLAFLGILVGMVIAVIYTFPENMHYAKLCRQ  367
             +++G  +     +  ++QE  G +  + GL      +   I  +           L  +
Sbjct  209  LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRL-----------LLGR  257

Query  368  TTGRLPPEVRLAPSIVGAIALPIGLFWFAWTNSPSIHWMVSIAAGAPFGFGLVLVFLSVF  427
             + RL    RL  +++  I   +GL   + T S     +  +  G  FG     +   V 
Sbjct  258  LSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVS  317

Query  428  NYLIDAYTIYSASVLAANSALRSLFGAAFP  457
            +    A      +     +   SL GA  P
Sbjct  318  DL---APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00012207

Length=636
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            127     1e-32


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 127 bits (320),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 95/391 (24%), Positives = 151/391 (39%), Gaps = 48/391 (12%)

Query  97   LTILVSLTTLAIALISSAYSGGMAEVMKELDSSREVTTLGISLFVLGFAFGPLIWAPMSE  156
            L +   L  L  +L+  A    +AE   +L  S     L ++LF LG+A    +   +S+
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAE---DLGISPTEIGLLLTLFSLGYALAQPLAGRLSD  57

Query  157  VFGRRNVFTITFCLLTAFNAGCAGSGNIQTLIILRFLAGFFGSSPFGNAGGSIADMFPAA  216
             FGRR V  I   L          + ++  L++LR L G    + F  A   IAD FP  
Sbjct  58   RFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE  117

Query  217  KRGIAISLFSAAPLCGPAIGPIIGGFLGSGAGWRWVEGFLAIFSGVIWICLCVFLPETYA  276
            +RG A+ L SA    G A+GP++GG L S  GWR     LAI S +  + L +  P   +
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  277  PVLLRKRAEKLSELSGKVYRSKLDIERGKLSLQQTLTTALSRPWRLLFREPIVFLFCIYM  336
                     +LS                           L   W+ L R+P   L+ +  
Sbjct  178  KRPKPAEEARLS---------------------------LIVAWKALLRDP--VLWLLLA  208

Query  337  AIIYGILYLCFAAFPIVFQEARGWNEGIGGLAF-LGILVGMVIAVIYTFPENMHYAKLCR  395
             +++G  +     +  ++QE  G +  + GL   LG L+G +  ++              
Sbjct  209  LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGR-----------  257

Query  396  QTTGRLPPEVRLAPSIVGAIALPIGLFWFAWTNSPSIHWMVSIAAGAPFGFGLVLVFLSV  455
              + RL    RL  +++  I   +GL   + T S     +  +  G  FG     +   V
Sbjct  258  -LSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALV  316

Query  456  FNYLIDAYTIYSASVLAANSALRSLFGAAFP  486
             +    A      +     +   SL GA  P
Sbjct  317  SDL---APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 800810970


Query= TCONS_00018160

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            124     8e-32


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 124 bits (313),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 95/391 (24%), Positives = 151/391 (39%), Gaps = 48/391 (12%)

Query  68   LTILVSLTTLAIALISSAYSGGMAEVMKELDSSREVTTLGISLFVLGFAFGPLIWAPMSE  127
            L +   L  L  +L+  A    +AE   +L  S     L ++LF LG+A    +   +S+
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAE---DLGISPTEIGLLLTLFSLGYALAQPLAGRLSD  57

Query  128  VFGRRNVFTITFCLLTAFNAGCAGSGNIQTLIILRFLAGFFGSSPFGNAGGSIADMFPAA  187
             FGRR V  I   L          + ++  L++LR L G    + F  A   IAD FP  
Sbjct  58   RFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE  117

Query  188  KRGIAISLFSAAPLCGPAIGPIIGGFLGSGAGWRWVEGFLAIFSGVIWICLCVFLPETYA  247
            +RG A+ L SA    G A+GP++GG L S  GWR     LAI S +  + L +  P   +
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  248  PVLLRKRAEKLSELSGKVYRSKLDIERGKLSLQQTLTTALSRPWRLLFREPIVFLFCIYM  307
                     +LS                           L   W+ L R+P   L+ +  
Sbjct  178  KRPKPAEEARLS---------------------------LIVAWKALLRDP--VLWLLLA  208

Query  308  AIIYGILYLCFAAFPIVFQEARGWNEGIGGLAF-LGILVGMVIAVIYTFPENMHYAKLCR  366
             +++G  +     +  ++QE  G +  + GL   LG L+G +  ++              
Sbjct  209  LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGR-----------  257

Query  367  QTTGRLPPEVRLAPSIVGAIALPIGLFWFAWTNSPSIHWMVSIAAGAPFGFGLVLVFLSV  426
              + RL    RL  +++  I   +GL   + T S     +  +  G  FG     +   V
Sbjct  258  -LSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALV  316

Query  427  FNYLIDAYTIYSASVLAANSALRSLFGAAFP  457
             +    A      +     +   SL GA  P
Sbjct  317  SDL---APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00012208

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            105     9e-26


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 105 bits (265),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 93/390 (24%), Positives = 148/390 (38%), Gaps = 46/390 (12%)

Query  68   LTILVSLTTLAIALISSAYSGGMAEVMKELDSSREVTTLGISLFVLGFAFGPLIWAPMSE  127
            L +   L  L  +L+  A    +AE   +L  S     L ++LF LG+A    +   +S+
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAE---DLGISPTEIGLLLTLFSLGYALAQPLAGRLSD  57

Query  128  VFGRRNVFTITFCLLTAFNAGCAGSGNIQTLIILRFLAGFFGSSPFGNAGGSIADMFPAA  187
             FGRR V  I   L          + ++  L++LR L G    + F  A   IAD FP  
Sbjct  58   RFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE  117

Query  188  KRGIAISLFSAAPLCGPAIGPIIGGFLGSGAGWRWVEGFLAIFSGVIWICLCVFLPETYA  247
            +RG A+ L SA    G A+GP++GG L S  GWR     LAI S +  + L +  P   +
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  248  PVLLRKRAEKLSELSGKVYRSKLDIERGKLSLQQTLTTALSRPWRLLFREPIVFLFCIYM  307
                     +LS                           L   W+ L R+P   L+ +  
Sbjct  178  KRPKPAEEARLS---------------------------LIVAWKALLRDP--VLWLLLA  208

Query  308  AIIYGILYLCFAAFPIVFQEARGWNEGIGGLAFLGILVGMVIAVIYTFPENMHYAKLCRQ  367
             +++G  +     +  ++QE  G +  + GL      +   I  +           L  +
Sbjct  209  LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRL-----------LLGR  257

Query  368  TTGRLPPEVRLAPSIVGAIALPIGLFWFAWTNSPSIHWMVSIAAGAPFGFGLVLVFLSVF  427
             + RL    RL  +++  I   +GL   + T S     +  +  G  FG     +   V 
Sbjct  258  LSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVS  317

Query  428  NYLIDAYTIYSASVLAANSALRSLFGAAFP  457
            +    A      +     +   SL GA  P
Sbjct  318  DL---APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00012210

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            105     9e-26


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 105 bits (265),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 93/390 (24%), Positives = 148/390 (38%), Gaps = 46/390 (12%)

Query  68   LTILVSLTTLAIALISSAYSGGMAEVMKELDSSREVTTLGISLFVLGFAFGPLIWAPMSE  127
            L +   L  L  +L+  A    +AE   +L  S     L ++LF LG+A    +   +S+
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAE---DLGISPTEIGLLLTLFSLGYALAQPLAGRLSD  57

Query  128  VFGRRNVFTITFCLLTAFNAGCAGSGNIQTLIILRFLAGFFGSSPFGNAGGSIADMFPAA  187
             FGRR V  I   L          + ++  L++LR L G    + F  A   IAD FP  
Sbjct  58   RFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE  117

Query  188  KRGIAISLFSAAPLCGPAIGPIIGGFLGSGAGWRWVEGFLAIFSGVIWICLCVFLPETYA  247
            +RG A+ L SA    G A+GP++GG L S  GWR     LAI S +  + L +  P   +
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  248  PVLLRKRAEKLSELSGKVYRSKLDIERGKLSLQQTLTTALSRPWRLLFREPIVFLFCIYM  307
                     +LS                           L   W+ L R+P   L+ +  
Sbjct  178  KRPKPAEEARLS---------------------------LIVAWKALLRDP--VLWLLLA  208

Query  308  AIIYGILYLCFAAFPIVFQEARGWNEGIGGLAFLGILVGMVIAVIYTFPENMHYAKLCRQ  367
             +++G  +     +  ++QE  G +  + GL      +   I  +           L  +
Sbjct  209  LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRL-----------LLGR  257

Query  368  TTGRLPPEVRLAPSIVGAIALPIGLFWFAWTNSPSIHWMVSIAAGAPFGFGLVLVFLSVF  427
             + RL    RL  +++  I   +GL   + T S     +  +  G  FG     +   V 
Sbjct  258  LSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVS  317

Query  428  NYLIDAYTIYSASVLAANSALRSLFGAAFP  457
            +    A      +     +   SL GA  P
Sbjct  318  DL---APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00012211

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0759    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00012212

Length=394


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00012213

Length=529


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 663160908


Query= TCONS_00012214

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427298 pfam03446, NAD_binding_2, NAD binding domain of 6-phos...  102     2e-27
CDD:434252 pfam14833, NAD_binding_11, NAD-binding of NADP-depende...  57.9    3e-11


>CDD:427298 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate 
dehydrogenase.  The NAD binding domain of 6-phosphogluconate 
dehydrogenase adopts a Rossmann fold.
Length=159

 Score = 102 bits (257),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 41/154 (27%), Positives = 67/154 (44%), Gaps = 13/154 (8%)

Query  1    MSKNIAQKGPQSSLTLYNRTVAKASAFAESLGSTQAPVTVASTIPEAVKDASIIFICVAD  60
            M+ N+ + G   ++T+YNRT  K            A    A++  E V    ++   V  
Sbjct  14   MALNLLKAG--YTVTVYNRTPEKVEELVA------AGAIAAASPAEFVAGLDVVITMVPA  65

Query  61   DPALDQIISTILADSSLNLASK--VFVDCSTVHPDTSRRTHAALTPRGASFIACPVFGAP  118
              A+D   + I  +  L       + +D ST  P+ +RR    L  +G  F+  PV G  
Sbjct  66   GAAVD---AVIFGEGLLPGLKPGDIIIDGSTSSPEDARRRAKELKEKGLHFLDAPVSGGE  122

Query  119  VFADAGQLVVVPAGDAAAIDRIRPFFEGVTARAT  152
              A+ G L ++  GD  A +R++P  E + A  T
Sbjct  123  AGAENGTLSIMVGGDEEAFERVKPILEAMGACVT  156


>CDD:434252 pfam14833, NAD_binding_11, NAD-binding of NADP-dependent 3-hydroxyisobutyrate 
dehydrogenase.  3-Hydroxyisobutyrate is a central 
metabolite in the valine catabolic pathway, and is reversibly 
oxidized to methylmalonate semi-aldehyde by a specific 
dehydrogenase belonging to the 3-hydroxyacid dehydrogenase 
family. The reaction is NADP-dependent and this region of 
the enzyme binds NAD. The NAD-binding domain of 6-phosphogluconate 
dehydrogenase adopts an alpha helical structure.
Length=122

 Score = 57.9 bits (141),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 35/126 (28%), Positives = 56/126 (44%), Gaps = 7/126 (6%)

Query  161  GRASTLKILGNTLILNTVESIAEGLVAAEKFGLGADVYQQWVHGLVGGMFA---KYADRM  217
            G    +K   N L+   + + +E L  A K GL  +V  + ++G  G   A   K+  R+
Sbjct  1    GAGQAVKAANNLLVAINLAATSEALALAVKAGLDPEVVLEVLNGGSGRSNALENKFPQRV  60

Query  218  CTGDYYKREEPLFAVDLARKDLRHAASLAEAAGMRLRSVEITDAYLQEVKAEKGEKGDIA  277
             + D+    +P FA+DL  KDL  A  LA A G+ L    +     Q   A+ G   D +
Sbjct  61   LSRDF----DPGFALDLMLKDLGLALDLARALGVPLPLTALAAQLYQAAAAQGGGDADHS  116

Query  278  GVYGAI  283
             +   +
Sbjct  117  AIIRLL  122



Lambda      K        H        a         alpha
   0.318    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00012215

Length=611
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  382     1e-129


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 382 bits (982),  Expect = 1e-129, Method: Composition-based stats.
 Identities = 160/364 (44%), Positives = 215/364 (59%), Gaps = 32/364 (9%)

Query  57   GDLRGIVNRLDYFVALGIDVIWISPIYESPMRDMGYDISDYRKVNPVFGTMQDMELLIEE  116
            GDL+GI+ +LDY   LG+  IW+SPI++SP  D GYDI+DY K++P +GTM+D + LI +
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLSPIFDSPQADHGYDIADYYKIDPHYGTMEDFKELISK  60

Query  117  THRRGLRLILDIALNHTATEHEWFQTSRRARKDPRLGKRDWYFWSEGKLDEFGNRIPPNN  176
             H RG+++ILD+ +NHT+ EH WFQ SR ++ +P    RD+YFW  G     G  IPPNN
Sbjct  61   AHERGIKVILDLVVNHTSDEHAWFQESRSSKDNP---YRDYYFWRPG-----GGPIPPNN  112

Query  177  WESTFTGSVWEWDELAGEFYLHIFGKNQPDLNWDCEEVRKELYSVLRFWLDKGVDGFRLD  236
            W S F GS W +DE   E+YLH+F   QPDLNW+  EVR ELY V+RFWLDKG+DGFR+D
Sbjct  113  WRSYFGGSAWTYDEKGQEYYLHLFVAGQPDLNWENPEVRNELYDVVRFWLDKGIDGFRID  172

Query  237  TMNLVSKTSSFPDAPISKEGSIWQPANYLFANGPHIHEYLQEMHEEVFSHYDCMTLAEMS  296
             +  +SK    P                   NGP  HE+ Q M+E VF + D MT+ E+ 
Sbjct  173  VVKHISKVPGLP----------------FENNGPFWHEFTQAMNETVFGYKDVMTVGEVF  216

Query  297  CGVSAPEAVRYTSRFNARPELNLVIQFQHVELDCHDGDKWMLREWELPELKRIINEWQET  356
                   A  YT    AR EL +   F H ++      KW L      +LK +I +W + 
Sbjct  217  -HGDGEWARVYT--TEARMELEMGFNFPHNDVALKPFIKWDLAPISARKLKEMITDWLDA  273

Query  357  LVKNGGWNTVWMENHDQPRGISRFTTNSPRFRALCAKLLALWQFTLQGTNLIFQGQELGM  416
            L    GWN  ++ NHDQPR +SRF  +        AKLLA++  TL+GT  I+QG+E+GM
Sbjct  274  LPDTNGWNFTFLGNHDQPRFLSRFGDD-----RASAKLLAVFLLTLRGTPYIYQGEEIGM  328

Query  417  INPG  420
                
Sbjct  329  TGGN  332



Lambda      K        H        a         alpha
   0.320    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 775608132


Query= TCONS_00012219

Length=917
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427539 pfam03835, Rad4, Rad4 transglutaminase-like domain         152     3e-43
CDD:463079 pfam10405, BHD_3, Rad4 beta-hairpin domain 3. This sho...  138     2e-39
CDD:463078 pfam10404, BHD_2, Rad4 beta-hairpin domain 2. This sho...  89.2    3e-22
CDD:463077 pfam10403, BHD_1, Rad4 beta-hairpin domain 1. This sho...  68.3    5e-15


>CDD:427539 pfam03835, Rad4, Rad4 transglutaminase-like domain.  
Length=146

 Score = 152 bits (385),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 80/157 (51%), Gaps = 20/157 (13%)

Query  364  ESDSTDSESDPAHKYNPRKYDKDLPFPIYWTEVASPVTHEIIPVDPLILSNPVATTPELQ  423
               S DS      +   R  DKDLP+P+YW EV +P T + I VDPL+L      T EL+
Sbjct  10   SLKSDDSSPKSDKRETSRLKDKDLPYPVYWVEVFNPETKKWISVDPLVLK-----TIELK  64

Query  424  AAFEPRGAKAEKAKQVICYVVAYSSDKTAKDVTTRYLRRRTWPGKTKGYRIPVEKIPVPG  483
            + FEPR   AEKA  V+ YVVA+ SD  AKDVT RY    T+  KT+  RI         
Sbjct  65   SKFEPR--IAEKALNVMTYVVAFDSDGGAKDVTRRYC--STYNAKTRKRRIE--------  112

Query  484  RKRKFFEYDWFRTILRVYERSEENRTKVDEIEDTTDL  520
              R     DW+ ++LR Y +     +  D+ ED   L
Sbjct  113  --RTDDGKDWWESVLRPYNKPNREAS-RDDYEDAELL  146


>CDD:463079 pfam10405, BHD_3, Rad4 beta-hairpin domain 3.  This short domain 
is found in the Rad4 protein. This domain binds to DNA.
Length=73

 Score = 138 bits (350),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 54/73 (74%), Gaps = 0/73 (0%)

Query  659  IPKNEYGNIDCFVPSMVPRGAVHIPWPGTVRICKELGIDYAEAVTGFEFGSKMAVPVIQG  718
            +PKN YGNID FVPSM+P G VHIP PG  R  K+LGIDYA AVTGF+F  +   PVI G
Sbjct  1    VPKNAYGNIDIFVPSMLPEGCVHIPLPGAARAAKKLGIDYAPAVTGFDFKGRRGKPVIDG  60

Query  719  VVVASENEDLVKD  731
            +VVA E+E+ + +
Sbjct  61   IVVAEEDEEALLE  73


>CDD:463078 pfam10404, BHD_2, Rad4 beta-hairpin domain 2.  This short domain 
is found in the Rad4 protein. This domain binds to DNA.
Length=63

 Score = 89.2 bits (222),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 0/62 (0%)

Query  591  SAESWHKEGRRIKMGEAPLKLVPIRAVTLLRKREVDEMERETGEKPKQGLYAKYQTEYII  650
            SAE W++EGR +K GE PLK V  RAVT  RKRE ++   E GE+   GLYA++QTE  I
Sbjct  2    SAEKWYREGREVKPGEQPLKRVKARAVTKNRKREEEDAREEDGEEGGVGLYAEWQTELYI  61

Query  651  PP  652
            PP
Sbjct  62   PP  63


>CDD:463077 pfam10403, BHD_1, Rad4 beta-hairpin domain 1.  This short domain 
is found in the Rad4 protein. This domain binds to DNA.
Length=54

 Score = 68.3 bits (168),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 33/58 (57%), Gaps = 6/58 (10%)

Query  531  KEG--DTLQSLRSSTEFVLERFLRREEALRPGAQPVRTFVSGKGDKAKEEKVYRRADV  586
             E     +Q  ++   +VLER L+R E + PGA+PV TF   K    K E VYRR+DV
Sbjct  1    NEPMPTNIQDFKNHPLYVLERHLKRNEVIYPGAKPVGTFRYKK----KGEPVYRRSDV  54



Lambda      K        H        a         alpha
   0.313    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1179992508


Query= TCONS_00012218

Length=917
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427539 pfam03835, Rad4, Rad4 transglutaminase-like domain         152     3e-43
CDD:463079 pfam10405, BHD_3, Rad4 beta-hairpin domain 3. This sho...  138     2e-39
CDD:463078 pfam10404, BHD_2, Rad4 beta-hairpin domain 2. This sho...  89.2    3e-22
CDD:463077 pfam10403, BHD_1, Rad4 beta-hairpin domain 1. This sho...  68.3    5e-15


>CDD:427539 pfam03835, Rad4, Rad4 transglutaminase-like domain.  
Length=146

 Score = 152 bits (385),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 80/157 (51%), Gaps = 20/157 (13%)

Query  364  ESDSTDSESDPAHKYNPRKYDKDLPFPIYWTEVASPVTHEIIPVDPLILSNPVATTPELQ  423
               S DS      +   R  DKDLP+P+YW EV +P T + I VDPL+L      T EL+
Sbjct  10   SLKSDDSSPKSDKRETSRLKDKDLPYPVYWVEVFNPETKKWISVDPLVLK-----TIELK  64

Query  424  AAFEPRGAKAEKAKQVICYVVAYSSDKTAKDVTTRYLRRRTWPGKTKGYRIPVEKIPVPG  483
            + FEPR   AEKA  V+ YVVA+ SD  AKDVT RY    T+  KT+  RI         
Sbjct  65   SKFEPR--IAEKALNVMTYVVAFDSDGGAKDVTRRYC--STYNAKTRKRRIE--------  112

Query  484  RKRKFFEYDWFRTILRVYERSEENRTKVDEIEDTTDL  520
              R     DW+ ++LR Y +     +  D+ ED   L
Sbjct  113  --RTDDGKDWWESVLRPYNKPNREAS-RDDYEDAELL  146


>CDD:463079 pfam10405, BHD_3, Rad4 beta-hairpin domain 3.  This short domain 
is found in the Rad4 protein. This domain binds to DNA.
Length=73

 Score = 138 bits (350),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 54/73 (74%), Gaps = 0/73 (0%)

Query  659  IPKNEYGNIDCFVPSMVPRGAVHIPWPGTVRICKELGIDYAEAVTGFEFGSKMAVPVIQG  718
            +PKN YGNID FVPSM+P G VHIP PG  R  K+LGIDYA AVTGF+F  +   PVI G
Sbjct  1    VPKNAYGNIDIFVPSMLPEGCVHIPLPGAARAAKKLGIDYAPAVTGFDFKGRRGKPVIDG  60

Query  719  VVVASENEDLVKD  731
            +VVA E+E+ + +
Sbjct  61   IVVAEEDEEALLE  73


>CDD:463078 pfam10404, BHD_2, Rad4 beta-hairpin domain 2.  This short domain 
is found in the Rad4 protein. This domain binds to DNA.
Length=63

 Score = 89.2 bits (222),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 0/62 (0%)

Query  591  SAESWHKEGRRIKMGEAPLKLVPIRAVTLLRKREVDEMERETGEKPKQGLYAKYQTEYII  650
            SAE W++EGR +K GE PLK V  RAVT  RKRE ++   E GE+   GLYA++QTE  I
Sbjct  2    SAEKWYREGREVKPGEQPLKRVKARAVTKNRKREEEDAREEDGEEGGVGLYAEWQTELYI  61

Query  651  PP  652
            PP
Sbjct  62   PP  63


>CDD:463077 pfam10403, BHD_1, Rad4 beta-hairpin domain 1.  This short domain 
is found in the Rad4 protein. This domain binds to DNA.
Length=54

 Score = 68.3 bits (168),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 33/58 (57%), Gaps = 6/58 (10%)

Query  531  KEG--DTLQSLRSSTEFVLERFLRREEALRPGAQPVRTFVSGKGDKAKEEKVYRRADV  586
             E     +Q  ++   +VLER L+R E + PGA+PV TF   K    K E VYRR+DV
Sbjct  1    NEPMPTNIQDFKNHPLYVLERHLKRNEVIYPGAKPVGTFRYKK----KGEPVYRRSDV  54



Lambda      K        H        a         alpha
   0.313    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1179992508


Query= TCONS_00012217

Length=917
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427539 pfam03835, Rad4, Rad4 transglutaminase-like domain         152     3e-43
CDD:463079 pfam10405, BHD_3, Rad4 beta-hairpin domain 3. This sho...  138     2e-39
CDD:463078 pfam10404, BHD_2, Rad4 beta-hairpin domain 2. This sho...  89.2    3e-22
CDD:463077 pfam10403, BHD_1, Rad4 beta-hairpin domain 1. This sho...  68.3    5e-15


>CDD:427539 pfam03835, Rad4, Rad4 transglutaminase-like domain.  
Length=146

 Score = 152 bits (385),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 80/157 (51%), Gaps = 20/157 (13%)

Query  364  ESDSTDSESDPAHKYNPRKYDKDLPFPIYWTEVASPVTHEIIPVDPLILSNPVATTPELQ  423
               S DS      +   R  DKDLP+P+YW EV +P T + I VDPL+L      T EL+
Sbjct  10   SLKSDDSSPKSDKRETSRLKDKDLPYPVYWVEVFNPETKKWISVDPLVLK-----TIELK  64

Query  424  AAFEPRGAKAEKAKQVICYVVAYSSDKTAKDVTTRYLRRRTWPGKTKGYRIPVEKIPVPG  483
            + FEPR   AEKA  V+ YVVA+ SD  AKDVT RY    T+  KT+  RI         
Sbjct  65   SKFEPR--IAEKALNVMTYVVAFDSDGGAKDVTRRYC--STYNAKTRKRRIE--------  112

Query  484  RKRKFFEYDWFRTILRVYERSEENRTKVDEIEDTTDL  520
              R     DW+ ++LR Y +     +  D+ ED   L
Sbjct  113  --RTDDGKDWWESVLRPYNKPNREAS-RDDYEDAELL  146


>CDD:463079 pfam10405, BHD_3, Rad4 beta-hairpin domain 3.  This short domain 
is found in the Rad4 protein. This domain binds to DNA.
Length=73

 Score = 138 bits (350),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 54/73 (74%), Gaps = 0/73 (0%)

Query  659  IPKNEYGNIDCFVPSMVPRGAVHIPWPGTVRICKELGIDYAEAVTGFEFGSKMAVPVIQG  718
            +PKN YGNID FVPSM+P G VHIP PG  R  K+LGIDYA AVTGF+F  +   PVI G
Sbjct  1    VPKNAYGNIDIFVPSMLPEGCVHIPLPGAARAAKKLGIDYAPAVTGFDFKGRRGKPVIDG  60

Query  719  VVVASENEDLVKD  731
            +VVA E+E+ + +
Sbjct  61   IVVAEEDEEALLE  73


>CDD:463078 pfam10404, BHD_2, Rad4 beta-hairpin domain 2.  This short domain 
is found in the Rad4 protein. This domain binds to DNA.
Length=63

 Score = 89.2 bits (222),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 0/62 (0%)

Query  591  SAESWHKEGRRIKMGEAPLKLVPIRAVTLLRKREVDEMERETGEKPKQGLYAKYQTEYII  650
            SAE W++EGR +K GE PLK V  RAVT  RKRE ++   E GE+   GLYA++QTE  I
Sbjct  2    SAEKWYREGREVKPGEQPLKRVKARAVTKNRKREEEDAREEDGEEGGVGLYAEWQTELYI  61

Query  651  PP  652
            PP
Sbjct  62   PP  63


>CDD:463077 pfam10403, BHD_1, Rad4 beta-hairpin domain 1.  This short domain 
is found in the Rad4 protein. This domain binds to DNA.
Length=54

 Score = 68.3 bits (168),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 33/58 (57%), Gaps = 6/58 (10%)

Query  531  KEG--DTLQSLRSSTEFVLERFLRREEALRPGAQPVRTFVSGKGDKAKEEKVYRRADV  586
             E     +Q  ++   +VLER L+R E + PGA+PV TF   K    K E VYRR+DV
Sbjct  1    NEPMPTNIQDFKNHPLYVLERHLKRNEVIYPGAKPVGTFRYKK----KGEPVYRRSDV  54



Lambda      K        H        a         alpha
   0.313    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1179992508


Query= TCONS_00018161

Length=294


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00018162

Length=917
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427539 pfam03835, Rad4, Rad4 transglutaminase-like domain         152     3e-43
CDD:463079 pfam10405, BHD_3, Rad4 beta-hairpin domain 3. This sho...  138     2e-39
CDD:463078 pfam10404, BHD_2, Rad4 beta-hairpin domain 2. This sho...  89.2    3e-22
CDD:463077 pfam10403, BHD_1, Rad4 beta-hairpin domain 1. This sho...  68.3    5e-15


>CDD:427539 pfam03835, Rad4, Rad4 transglutaminase-like domain.  
Length=146

 Score = 152 bits (385),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 80/157 (51%), Gaps = 20/157 (13%)

Query  364  ESDSTDSESDPAHKYNPRKYDKDLPFPIYWTEVASPVTHEIIPVDPLILSNPVATTPELQ  423
               S DS      +   R  DKDLP+P+YW EV +P T + I VDPL+L      T EL+
Sbjct  10   SLKSDDSSPKSDKRETSRLKDKDLPYPVYWVEVFNPETKKWISVDPLVLK-----TIELK  64

Query  424  AAFEPRGAKAEKAKQVICYVVAYSSDKTAKDVTTRYLRRRTWPGKTKGYRIPVEKIPVPG  483
            + FEPR   AEKA  V+ YVVA+ SD  AKDVT RY    T+  KT+  RI         
Sbjct  65   SKFEPR--IAEKALNVMTYVVAFDSDGGAKDVTRRYC--STYNAKTRKRRIE--------  112

Query  484  RKRKFFEYDWFRTILRVYERSEENRTKVDEIEDTTDL  520
              R     DW+ ++LR Y +     +  D+ ED   L
Sbjct  113  --RTDDGKDWWESVLRPYNKPNREAS-RDDYEDAELL  146


>CDD:463079 pfam10405, BHD_3, Rad4 beta-hairpin domain 3.  This short domain 
is found in the Rad4 protein. This domain binds to DNA.
Length=73

 Score = 138 bits (350),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 54/73 (74%), Gaps = 0/73 (0%)

Query  659  IPKNEYGNIDCFVPSMVPRGAVHIPWPGTVRICKELGIDYAEAVTGFEFGSKMAVPVIQG  718
            +PKN YGNID FVPSM+P G VHIP PG  R  K+LGIDYA AVTGF+F  +   PVI G
Sbjct  1    VPKNAYGNIDIFVPSMLPEGCVHIPLPGAARAAKKLGIDYAPAVTGFDFKGRRGKPVIDG  60

Query  719  VVVASENEDLVKD  731
            +VVA E+E+ + +
Sbjct  61   IVVAEEDEEALLE  73


>CDD:463078 pfam10404, BHD_2, Rad4 beta-hairpin domain 2.  This short domain 
is found in the Rad4 protein. This domain binds to DNA.
Length=63

 Score = 89.2 bits (222),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 0/62 (0%)

Query  591  SAESWHKEGRRIKMGEAPLKLVPIRAVTLLRKREVDEMERETGEKPKQGLYAKYQTEYII  650
            SAE W++EGR +K GE PLK V  RAVT  RKRE ++   E GE+   GLYA++QTE  I
Sbjct  2    SAEKWYREGREVKPGEQPLKRVKARAVTKNRKREEEDAREEDGEEGGVGLYAEWQTELYI  61

Query  651  PP  652
            PP
Sbjct  62   PP  63


>CDD:463077 pfam10403, BHD_1, Rad4 beta-hairpin domain 1.  This short domain 
is found in the Rad4 protein. This domain binds to DNA.
Length=54

 Score = 68.3 bits (168),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 33/58 (57%), Gaps = 6/58 (10%)

Query  531  KEG--DTLQSLRSSTEFVLERFLRREEALRPGAQPVRTFVSGKGDKAKEEKVYRRADV  586
             E     +Q  ++   +VLER L+R E + PGA+PV TF   K    K E VYRR+DV
Sbjct  1    NEPMPTNIQDFKNHPLYVLERHLKRNEVIYPGAKPVGTFRYKK----KGEPVYRRSDV  54



Lambda      K        H        a         alpha
   0.313    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1179992508


Query= TCONS_00012220

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00012221

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432939 pfam13023, HD_3, HD domain. HD domains are metal depen...  205     2e-68


>CDD:432939 pfam13023, HD_3, HD domain.  HD domains are metal dependent phosphohydrolases.
Length=163

 Score = 205 bits (524),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 94/169 (56%), Gaps = 11/169 (7%)

Query  38   LERLKTTKREGWRRFGISTGESISDHMYRMSIMTMLAPPTLASRLNLPHCMKMALIHDMA  97
             ++LK  KR+GW + G    ES+++H +RM++M ML        +++   +KMALIHD+ 
Sbjct  1    ADKLKFVKRQGWLQDGRVRPESVAEHSWRMALMAMLLAEYAG-PVDIARVIKMALIHDLV  59

Query  98   ESIVGDITPVDKVNKAEKARREAEVMDYIAKNLLGGVPGGMLTGEEILKVFNEYEANETL  157
            E + GDI P D V K EK  RE E  + I   L          GEE+L +++E+EA ET 
Sbjct  60   EILAGDIIPYDGVAKEEKEEREREAAERIFGLLPEDQ------GEELLALWDEFEARETP  113

Query  158  EAQFVHDVDKMELLLQMLEYER----THKVDLSEFCHVAGRIQLDEVKE  202
            EA+F  D+DK+E LLQ LEYE       + DLS+F      I  +   E
Sbjct  114  EAKFAKDLDKLEPLLQNLEYEGDSWAAFEADLSQFYGRNSTILAEGSPE  162



Lambda      K        H        a         alpha
   0.317    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00012222

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432939 pfam13023, HD_3, HD domain. HD domains are metal depen...  205     2e-68


>CDD:432939 pfam13023, HD_3, HD domain.  HD domains are metal dependent phosphohydrolases.
Length=163

 Score = 205 bits (524),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 94/169 (56%), Gaps = 11/169 (7%)

Query  38   LERLKTTKREGWRRFGISTGESISDHMYRMSIMTMLAPPTLASRLNLPHCMKMALIHDMA  97
             ++LK  KR+GW + G    ES+++H +RM++M ML        +++   +KMALIHD+ 
Sbjct  1    ADKLKFVKRQGWLQDGRVRPESVAEHSWRMALMAMLLAEYAG-PVDIARVIKMALIHDLV  59

Query  98   ESIVGDITPVDKVNKAEKARREAEVMDYIAKNLLGGVPGGMLTGEEILKVFNEYEANETL  157
            E + GDI P D V K EK  RE E  + I   L          GEE+L +++E+EA ET 
Sbjct  60   EILAGDIIPYDGVAKEEKEEREREAAERIFGLLPEDQ------GEELLALWDEFEARETP  113

Query  158  EAQFVHDVDKMELLLQMLEYER----THKVDLSEFCHVAGRIQLDEVKE  202
            EA+F  D+DK+E LLQ LEYE       + DLS+F      I  +   E
Sbjct  114  EAKFAKDLDKLEPLLQNLEYEGDSWAAFEADLSQFYGRNSTILAEGSPE  162



Lambda      K        H        a         alpha
   0.317    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00018163

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432939 pfam13023, HD_3, HD domain. HD domains are metal depen...  205     2e-68


>CDD:432939 pfam13023, HD_3, HD domain.  HD domains are metal dependent phosphohydrolases.
Length=163

 Score = 205 bits (524),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 94/169 (56%), Gaps = 11/169 (7%)

Query  38   LERLKTTKREGWRRFGISTGESISDHMYRMSIMTMLAPPTLASRLNLPHCMKMALIHDMA  97
             ++LK  KR+GW + G    ES+++H +RM++M ML        +++   +KMALIHD+ 
Sbjct  1    ADKLKFVKRQGWLQDGRVRPESVAEHSWRMALMAMLLAEYAG-PVDIARVIKMALIHDLV  59

Query  98   ESIVGDITPVDKVNKAEKARREAEVMDYIAKNLLGGVPGGMLTGEEILKVFNEYEANETL  157
            E + GDI P D V K EK  RE E  + I   L          GEE+L +++E+EA ET 
Sbjct  60   EILAGDIIPYDGVAKEEKEEREREAAERIFGLLPEDQ------GEELLALWDEFEARETP  113

Query  158  EAQFVHDVDKMELLLQMLEYER----THKVDLSEFCHVAGRIQLDEVKE  202
            EA+F  D+DK+E LLQ LEYE       + DLS+F      I  +   E
Sbjct  114  EAKFAKDLDKLEPLLQNLEYEGDSWAAFEADLSQFYGRNSTILAEGSPE  162



Lambda      K        H        a         alpha
   0.317    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00018164

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432939 pfam13023, HD_3, HD domain. HD domains are metal depen...  205     2e-68


>CDD:432939 pfam13023, HD_3, HD domain.  HD domains are metal dependent phosphohydrolases.
Length=163

 Score = 205 bits (524),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 94/169 (56%), Gaps = 11/169 (7%)

Query  38   LERLKTTKREGWRRFGISTGESISDHMYRMSIMTMLAPPTLASRLNLPHCMKMALIHDMA  97
             ++LK  KR+GW + G    ES+++H +RM++M ML        +++   +KMALIHD+ 
Sbjct  1    ADKLKFVKRQGWLQDGRVRPESVAEHSWRMALMAMLLAEYAG-PVDIARVIKMALIHDLV  59

Query  98   ESIVGDITPVDKVNKAEKARREAEVMDYIAKNLLGGVPGGMLTGEEILKVFNEYEANETL  157
            E + GDI P D V K EK  RE E  + I   L          GEE+L +++E+EA ET 
Sbjct  60   EILAGDIIPYDGVAKEEKEEREREAAERIFGLLPEDQ------GEELLALWDEFEARETP  113

Query  158  EAQFVHDVDKMELLLQMLEYER----THKVDLSEFCHVAGRIQLDEVKE  202
            EA+F  D+DK+E LLQ LEYE       + DLS+F      I  +   E
Sbjct  114  EAKFAKDLDKLEPLLQNLEYEGDSWAAFEADLSQFYGRNSTILAEGSPE  162



Lambda      K        H        a         alpha
   0.317    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00012223

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432939 pfam13023, HD_3, HD domain. HD domains are metal depen...  205     2e-68


>CDD:432939 pfam13023, HD_3, HD domain.  HD domains are metal dependent phosphohydrolases.
Length=163

 Score = 205 bits (524),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 94/169 (56%), Gaps = 11/169 (7%)

Query  38   LERLKTTKREGWRRFGISTGESISDHMYRMSIMTMLAPPTLASRLNLPHCMKMALIHDMA  97
             ++LK  KR+GW + G    ES+++H +RM++M ML        +++   +KMALIHD+ 
Sbjct  1    ADKLKFVKRQGWLQDGRVRPESVAEHSWRMALMAMLLAEYAG-PVDIARVIKMALIHDLV  59

Query  98   ESIVGDITPVDKVNKAEKARREAEVMDYIAKNLLGGVPGGMLTGEEILKVFNEYEANETL  157
            E + GDI P D V K EK  RE E  + I   L          GEE+L +++E+EA ET 
Sbjct  60   EILAGDIIPYDGVAKEEKEEREREAAERIFGLLPEDQ------GEELLALWDEFEARETP  113

Query  158  EAQFVHDVDKMELLLQMLEYER----THKVDLSEFCHVAGRIQLDEVKE  202
            EA+F  D+DK+E LLQ LEYE       + DLS+F      I  +   E
Sbjct  114  EAKFAKDLDKLEPLLQNLEYEGDSWAAFEADLSQFYGRNSTILAEGSPE  162



Lambda      K        H        a         alpha
   0.317    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00012224

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396860 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding do...  180     7e-56


>CDD:396860 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain.  
This domain is found in HypB, a hydrogenase expression / formation 
protein, and UreG a urease accessory protein. Both these 
proteins contain a P-loop nucleotide binding motif. HypB 
has GTPase activity and is a guanine nucleotide binding protein. 
It is not known whether UreG binds GTP or some other nucleotide. 
Both enzymes are involved in nickel binding. HypB 
can store nickel and is required for nickel dependent hydrogenase 
expression. UreG is required for functional incorporation 
of the urease nickel metallocenter. GTP hydrolysis may 
required by these proteins for nickel incorporation into other 
nickel proteins. This family of domains also contains P47K, 
a Pseudomonas chlororaphis protein needed for nitrile hydratase 
expression, and the cobW gene product, which may be involved 
in cobalamin biosynthesis in Pseudomonas denitrificans.
Length=179

 Score = 180 bits (458),  Expect = 7e-56, Method: Composition-based stats.
 Identities = 77/209 (37%), Positives = 115/209 (55%), Gaps = 33/209 (16%)

Query  46   PITLVTGYLGAGKTTLLNYILSEK-HGKKIAVIMNEFGDSTDIEKPLTVNQNGQEVTEWM  104
            P+T++TG+LG+GKTTLLN++L +   G +IAVI+NEFG+ T I+  L            +
Sbjct  1    PVTVITGFLGSGKTTLLNHLLKQNRAGLRIAVIVNEFGE-TGIDAELLSETG----VLIV  55

Query  105  EVGNGCICCSVKDSGVMAIESLMERRGTFDYILLETTGLADPGNLAPVFWVDDNLGSSIY  164
            E+ NGCICC++++   MA+E+L+ER G  D I +ETTGLA+P  +A  F   + L S + 
Sbjct  56   ELSNGCICCTIREDLSMALEALLEREGRLDVIFIETTGLAEPAPVAQTFLSPE-LRSPVL  114

Query  165  LDGIVTLVDAKNILRLLDEPAPEETATSHTDGSENAGPGHSGPVLSMAHMQISHADVIIL  224
            LDG++T+VDA N       P               AG             QI+ AD+I+L
Sbjct  115  LDGVITVVDAANEADGEKIP-------------RKAGD------------QIAFADLIVL  149

Query  225  NKADLVTQEE-LDQVRSRILAINSVAKIH  252
            NK DL  +   L+ +   +  +N  A + 
Sbjct  150  NKTDLAPEVALLEVLEEDLRRLNPGAPVV  178



Lambda      K        H        a         alpha
   0.316    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00012225

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396860 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding do...  115     5e-32


>CDD:396860 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain.  
This domain is found in HypB, a hydrogenase expression / formation 
protein, and UreG a urease accessory protein. Both these 
proteins contain a P-loop nucleotide binding motif. HypB 
has GTPase activity and is a guanine nucleotide binding protein. 
It is not known whether UreG binds GTP or some other nucleotide. 
Both enzymes are involved in nickel binding. HypB 
can store nickel and is required for nickel dependent hydrogenase 
expression. UreG is required for functional incorporation 
of the urease nickel metallocenter. GTP hydrolysis may 
required by these proteins for nickel incorporation into other 
nickel proteins. This family of domains also contains P47K, 
a Pseudomonas chlororaphis protein needed for nitrile hydratase 
expression, and the cobW gene product, which may be involved 
in cobalamin biosynthesis in Pseudomonas denitrificans.
Length=179

 Score = 115 bits (290),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 27/150 (18%)

Query  1    MEVGNGCICCSVKDSGVMAIESLMERRGTFDYILLETTGLADPGNLAPVFWVDDNLGSSI  60
            +E+ NGCICC++++   MA+E+L+ER G  D I +ETTGLA+P  +A  F   + L S +
Sbjct  55   VELSNGCICCTIREDLSMALEALLEREGRLDVIFIETTGLAEPAPVAQTFLSPE-LRSPV  113

Query  61   YLDGIVTLVDAKNILRLLDEPAPEETATSHTDGSENAGPGHSGPVLSMAHMQISHADVII  120
             LDG++T+VDA N       P               AG             QI+ AD+I+
Sbjct  114  LLDGVITVVDAANEADGEKIP-------------RKAGD------------QIAFADLIV  148

Query  121  LNKADLVTQEE-LDQVRSRILAINSVAKIH  149
            LNK DL  +   L+ +   +  +N  A + 
Sbjct  149  LNKTDLAPEVALLEVLEEDLRRLNPGAPVV  178



Lambda      K        H        a         alpha
   0.318    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00012226

Length=1026
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  112     2e-29
CDD:428442 pfam05362, Lon_C, Lon protease (S16) C-terminal proteo...  111     2e-28
CDD:426647 pfam02190, LON_substr_bdg, ATP-dependent protease La (...  95.5    7e-23


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 112 bits (282),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 29/151 (19%)

Query  601  LCLVGPPGVGKTSIGKSIARALNRQYYRFSVGGLTDVAEIKGHRRTYVGALPGRIIQALK  660
            L L GPPG GKT++ K++A+ L   +   S   L            YVG    R+ +  +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVS---------KYVGESEKRLRELFE  51

Query  661  KCQTENP-LILIDEVDKIG--RGHQG-----DPSSALLELLDPEQNSSFLDHYMDVPVDL  712
              +   P +I IDE+D +   RG  G        + LL  LD   +S+            
Sbjct  52   AAKKLAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSN------------  99

Query  713  SKVLFVCTANVTDTIPRPLLDRMELIELSGY  743
            SKV+ +   N  D +   LL R + I     
Sbjct  100  SKVIVIAATNRPDKLDPALLGRFDRIIEFPL  130


>CDD:428442 pfam05362, Lon_C, Lon protease (S16) C-terminal proteolytic domain. 
 The Lon serine proteases must hydrolyze ATP to degrade 
protein substrates. In Escherichia coli, these proteases 
are involved in turnover of intracellular proteins, including 
abnormal proteins following heat-shock. The active site for 
protease activity resides in a C-terminal domain. The Lon 
proteases are classified as family S16 in Merops.
Length=205

 Score = 111 bits (281),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 44/114 (39%), Positives = 58/114 (51%), Gaps = 5/114 (4%)

Query  872  SIGKDSLTDYLGPPVFTADRLYDTFPPGVTMGLAWTSMGGAALYVESILENALTPESRPG  931
             +   +L  YLG P F           GV  GLAWT +GG  L +E     A+    +  
Sbjct  1    KVTAKNLEKYLGVPRFRYGEAEKEDQVGVVTGLAWTEVGGDLLTIE-----AVIMPGKGK  55

Query  932  IDITGNLQPVMKESTQIAYSFAKSVLAKQFPENKFFEKAKLHMHCPEGAVPKDG  985
            + +TG L  VMKES Q A S+ +S   +   +  FFEK  +H+H PEGA PKDG
Sbjct  56   LTLTGQLGDVMKESAQAALSYVRSRAEELGIDPDFFEKKDIHIHVPEGATPKDG  109


>CDD:426647 pfam02190, LON_substr_bdg, ATP-dependent protease La (LON) substrate-binding 
domain.  This domain has been shown to be part 
of the PUA superfamily. This domain represents a general 
protein and polypeptide interaction domain for the ATP-dependent 
serine peptidase, LON, Peptidase_S16, pfam05362. ATP-dependent 
Lon proteases are conserved in all living organisms 
and catalyze rapid turnover of short-lived regulatory proteins 
and many damaged or denatured proteins.
Length=195

 Score = 95.5 bits (238),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 52/251 (21%), Positives = 96/251 (38%), Gaps = 57/251 (23%)

Query  200  VMAIPIAKRPLFPGFYKAITIRDPNVATAIQEMMKRGQPYVGAFLFKDENADGDVIENLD  259
            +  +P+    LFPG    + +  P    AI+  + + + Y G  L   ++A+ D     D
Sbjct  2    LPLLPLRNTVLFPGMVLPLFVGRPRSIAAIEAALNKDKLY-GVLLVSQKDAE-DEEPTPD  59

Query  260  DVYDVGVFAQITAAYPLRGEASGVTAVLYPHRRIKISSLLPPGEQSKAGNTEDKAPEKKG  319
            D+Y+VG  A+I     L+        ++    R++I                 +  +K+ 
Sbjct  60   DLYEVGTVAKIVQI--LKLPDGTYKVLVEGLERVRI----------------VELVKKEE  101

Query  320  DVVASFEEGVAEPAPKDLYEPTSFLRKYPVSLVNVENLAEEPFDKKSAIIRAVTSEIVNV  379
                                       Y      VE+L  E  D+ S  ++A+  E++  
Sbjct  102  P--------------------------YLR--AEVEDL-PEDSDELSEALKALVKELIEK  132

Query  380  CKEIASLNPLFRDQISAFYTDQFPGNLSDEPAKLADFAAAVSAGELHEMQEVLEIMNIEE  439
             + +  L  L   ++             + P +LAD  AA+      E QE+LE ++++E
Sbjct  133  LRRL--LKLLLPLELLLKI------KDIENPGRLADLVAAILPLSPEEKQELLETLDVKE  184

Query  440  RLPKALVVLKK  450
            RL K L +L +
Sbjct  185  RLEKVLELLNR  195



Lambda      K        H        a         alpha
   0.313    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1316764680


Query= TCONS_00018165

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396860 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding do...  178     1e-56


>CDD:396860 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain.  
This domain is found in HypB, a hydrogenase expression / formation 
protein, and UreG a urease accessory protein. Both these 
proteins contain a P-loop nucleotide binding motif. HypB 
has GTPase activity and is a guanine nucleotide binding protein. 
It is not known whether UreG binds GTP or some other nucleotide. 
Both enzymes are involved in nickel binding. HypB 
can store nickel and is required for nickel dependent hydrogenase 
expression. UreG is required for functional incorporation 
of the urease nickel metallocenter. GTP hydrolysis may 
required by these proteins for nickel incorporation into other 
nickel proteins. This family of domains also contains P47K, 
a Pseudomonas chlororaphis protein needed for nitrile hydratase 
expression, and the cobW gene product, which may be involved 
in cobalamin biosynthesis in Pseudomonas denitrificans.
Length=179

 Score = 178 bits (454),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 77/209 (37%), Positives = 115/209 (55%), Gaps = 33/209 (16%)

Query  46   PITLVTGYLGAGKTTLLNYILSEK-HGKKIAVIMNEFGDSTDIEKPLTVNQNGQEVTEWM  104
            P+T++TG+LG+GKTTLLN++L +   G +IAVI+NEFG+ T I+  L            +
Sbjct  1    PVTVITGFLGSGKTTLLNHLLKQNRAGLRIAVIVNEFGE-TGIDAELLSETG----VLIV  55

Query  105  EVGNGCICCSVKDSGVMAIESLMERRGTFDYILLETTGLADPGNLAPVFWVDDNLGSSIY  164
            E+ NGCICC++++   MA+E+L+ER G  D I +ETTGLA+P  +A  F   + L S + 
Sbjct  56   ELSNGCICCTIREDLSMALEALLEREGRLDVIFIETTGLAEPAPVAQTFLSPE-LRSPVL  114

Query  165  LDGIVTLVDAKNILRLLDEPAPEETATSHTDGSENAGPGHSGPVLSMAHMQISHADVIIL  224
            LDG++T+VDA N       P               AG             QI+ AD+I+L
Sbjct  115  LDGVITVVDAANEADGEKIP-------------RKAGD------------QIAFADLIVL  149

Query  225  NKADLVTQEE-LDQVRSRILAINSVAKIH  252
            NK DL  +   L+ +   +  +N  A + 
Sbjct  150  NKTDLAPEVALLEVLEEDLRRLNPGAPVV  178



Lambda      K        H        a         alpha
   0.315    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00012227

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396860 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding do...  170     4e-52


>CDD:396860 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain.  
This domain is found in HypB, a hydrogenase expression / formation 
protein, and UreG a urease accessory protein. Both these 
proteins contain a P-loop nucleotide binding motif. HypB 
has GTPase activity and is a guanine nucleotide binding protein. 
It is not known whether UreG binds GTP or some other nucleotide. 
Both enzymes are involved in nickel binding. HypB 
can store nickel and is required for nickel dependent hydrogenase 
expression. UreG is required for functional incorporation 
of the urease nickel metallocenter. GTP hydrolysis may 
required by these proteins for nickel incorporation into other 
nickel proteins. This family of domains also contains P47K, 
a Pseudomonas chlororaphis protein needed for nitrile hydratase 
expression, and the cobW gene product, which may be involved 
in cobalamin biosynthesis in Pseudomonas denitrificans.
Length=179

 Score = 170 bits (433),  Expect = 4e-52, Method: Composition-based stats.
 Identities = 74/208 (36%), Positives = 111/208 (53%), Gaps = 35/208 (17%)

Query  46   PITLVTGYLGAGKTTLLNYILSEK-HGKKIAVIMN---ATDIEKPLTVNQNGQEVTEWME  101
            P+T++TG+LG+GKTTLLN++L +   G +IAVI+N    T I+  L            +E
Sbjct  1    PVTVITGFLGSGKTTLLNHLLKQNRAGLRIAVIVNEFGETGIDAELLSETG----VLIVE  56

Query  102  VGNGCICCSVKDSGVMAIESLMERRGTFDYILLETTGLADPGNLAPVFWVDDNLGSSIYL  161
            + NGCICC++++   MA+E+L+ER G  D I +ETTGLA+P  +A  F   + L S + L
Sbjct  57   LSNGCICCTIREDLSMALEALLEREGRLDVIFIETTGLAEPAPVAQTFLSPE-LRSPVLL  115

Query  162  DGIVTLVDAKNILRLLDEPAPEETATSHTDGSENAGPGHSGPVLSMAHMQISHADVIILN  221
            DG++T+VDA N       P               AG             QI+ AD+I+LN
Sbjct  116  DGVITVVDAANEADGEKIP-------------RKAGD------------QIAFADLIVLN  150

Query  222  KADLVTQEE-LDQVRSRILAINSVAKIH  248
            K DL  +   L+ +   +  +N  A + 
Sbjct  151  KTDLAPEVALLEVLEEDLRRLNPGAPVV  178



Lambda      K        H        a         alpha
   0.316    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00012228

Length=995
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460803 pfam03097, BRO1, BRO1-like domain. This domain is foun...  489     4e-166
CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain bindin...  311     5e-99 


>CDD:460803 pfam03097, BRO1, BRO1-like domain.  This domain is found in a 
number proteins including Rhophilin and BRO1. It is known to 
have a role in endosomal targeting. ESCRT-III subunit Snf7 
binds to a conserved hydrophobic patch in the BRO1 domain that 
is required for protein complex formation and for the protein-sorting 
function of BRO1.
Length=366

 Score = 489 bits (1261),  Expect = 4e-166, Method: Composition-based stats.
 Identities = 185/390 (47%), Positives = 240/390 (62%), Gaps = 27/390 (7%)

Query  6    MLSCPLKQTNEIDWIRPLKDYIRQSYGED-PERYNQECATLNRLRQDMRGAGKDSATGRD  64
            +LS PLK+T E+D  +PLK+YI  +YG   P  +  + A LN+LRQD      +  +G D
Sbjct  1    LLSIPLKKTEEVDLKKPLKNYISSTYGSQDPSSFEDDLAELNKLRQDAVRGANEDESGLD  60

Query  65   LLYRYYGQLELLDLRFPVDENHIKISFTWYDAF--THKPTSQYSLAYEKASIIFNISAVL  122
            LLY+YY QLELL+LRFP+D   I I FTWYDAF  + K  SQ SLA+EKAS++FNI+A+ 
Sbjct  61   LLYKYYAQLELLELRFPID-IQIGIEFTWYDAFGTSSKKVSQSSLAFEKASVLFNIAALY  119

Query  123  SCHAANQNRAEESGLKTAYHSFQASAGMFTYINENFLHAPSTDLNRETVKTLINITLAQA  182
            S  AA+QNR+ + GLK A   FQ +AG F Y+ ENFLHAPS DL+ ET+K L N+ LAQA
Sbjct  120  SQLAASQNRSTDEGLKRACKYFQQAAGCFQYLKENFLHAPSPDLSPETLKALSNLMLAQA  179

Query  183  QEVFLEKQVTDQKKAGFLAKLASQAAYLYSQAAEGIQEYAKGVFDKSWTIVVQAKAAHMA  242
            QE F EK + D KK   +AKLA+Q + LY +A E ++    G+ DK W   VQAKA H  
Sbjct  180  QECFWEKAINDNKKDSLIAKLAAQVSELYEEALEALKL--SGLIDKEWISHVQAKAHHFK  237

Query  243  SVASYYQALADSESNSHGVAIARLQLADKNSTAAMGWAKSFPTSVTPNSNLTSESGASLV  302
            ++A Y QAL D E+  +G  IARLQLA      A+                 S+    ++
Sbjct  238  ALAQYRQALDDEEAKKYGEEIARLQLALSLLKEALK----------------SDRYKKVL  281

Query  303  DTIKYHQANVQVKLATFVKDNDFIYHQPVPNEAGLSAVAKLPAAKAIPVSELYQGQDIQR  362
            + +K     V+ KL    KDNDFIYH+ VP+E+ L  +      K IP  ELY  Q    
Sbjct  282  EDLKGLLDVVEEKLKRAEKDNDFIYHERVPSESSLPPIKPASMVKPIPPLELYPFQ----  337

Query  363  IIGPDIFQKLVPMSVTETASLYDEEKAKLI  392
             IGPD+F+KLVP+SV E AS Y E KAKL+
Sbjct  338  -IGPDLFKKLVPLSVHEAASAYSERKAKLV  366


>CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV. 
 The binding of the LYPxL motif of late HIV p6Gag and EIAV 
p9Gag to this domain is necessary for viral budding.This domain 
is generally central between an N-terminal Bro1 domain, 
pfam03097 and a C-terminal proline-rich domain. The retroviruses 
thus used this domain to hijack the ESCRT system of the 
cell.
Length=294

 Score = 311 bits (799),  Expect = 5e-99, Method: Composition-based stats.
 Identities = 124/332 (37%), Positives = 176/332 (53%), Gaps = 43/332 (13%)

Query  431  TVDDEFRQWCQELA---GHQSFAKAFDTLQDRKGEILSQLDRCSKQLDLEESVCEKMRSK  487
             +    R+  +E+    G +   K+ D L   K      LD   K LD EES  E++R+K
Sbjct  1    GLPPSLREKAEEVRQQGGIERLEKSLDDLPKLKQRNREILDEAEKLLDEEESEDEQLRAK  60

Query  488  YGADWSQQPSARLNSTLRSDIRTYRDTINEASASDSQLLATFRQYETDFDEMRSAGETNE  547
            YG  W++ PS+ L +TLR++IR YR+ + +AS SDSQ+ + FR++E D + +      +E
Sbjct  61   YGTRWTRPPSSELTATLRAEIRKYREILEQASESDSQVRSKFREHEEDLELL---SGPDE  117

Query  548  ADVLFQRAMIKAGSKHGKGRNGVGSPYASTQEGSLLDDVYDEGSLSVAEQIARVESILKK  607
                F   +  +                               S SV EQ+A++  +L K
Sbjct  118  DLEAF---LPSSRRAK--------------------------NSPSVEEQVAKLRELLNK  148

Query  608  LNLVKRERSQVLKDLKEKVHNDDISNVLILNKKSI--AGQESQLFETELEKFRPHQNRLL  665
            LN +KRER Q+LKDLKEK  NDDIS  L+L K  +    QE QLFE ELEK+ P QNRL 
Sbjct  149  LNELKREREQLLKDLKEKARNDDISPKLLLEKARLIAPNQEEQLFEEELEKYDPLQNRLE  208

Query  666  QANHKQAALMKELTKVYGDLLQDKRVRSEQSKYEAITRQRNTVMARYKKIYDAFNGLLSG  725
            Q  HKQ  L+KE+T+   + LQDKRV SE        RQR   + + +  YD +  L+S 
Sbjct  209  QNLHKQEELLKEITEANNEFLQDKRVDSE------KQRQREEALQKLENAYDKYKELVSN  262

Query  726  IAQAQTFYTEMVETVESLKKNVETFINNRRSE  757
            + +   FY ++ E +E L K V+ F+N RRSE
Sbjct  263  LQEGLKFYNDLTEILEKLLKKVKDFVNARRSE  294



Lambda      K        H        a         alpha
   0.312    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1272872524


Query= TCONS_00018166

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain. This family...  237     1e-76
CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  104     2e-28
CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The cen...  78.8    7e-19


>CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain.  This family consists 
of the C terminal region of the DnaJ protein. It is always 
found associated with pfam00226 and pfam00684. DnaJ is a 
chaperone associated with the Hsp70 heat-shock system involved 
in protein folding and renaturation after stress. The two 
C-terminal domains CTDI and CTDII, both incorporated in this 
family are necessary for maintaining the J-domains in their 
specific relative positions. Structural analysis of Structure 
1nlt shows that pfam00684 is nested within this DnaJ C-terminal 
region.
Length=213

 Score = 237 bits (607),  Expect = 1e-76, Method: Composition-based stats.
 Identities = 97/230 (42%), Positives = 119/230 (52%), Gaps = 17/230 (7%)

Query  223  IEVQTNISFMEAAKGTSKDVVITPLVECGTCRGGGLKEGAKRSQCRQCNGSGTRVHFMQG  282
            +E +  ++  EA  G +K + IT  V C TC G G K G     C  C G G       G
Sbjct  1    LEYELELTLEEAYFGCTKKIKITRNVICDTCGGSGAKPGTSPKTCPCCGGGGQVRR-QFG  59

Query  283  GFQVAATCDACGGAGMIVPRGSECGTCRGNGVVRDKKTITVDIPGGVEDGMRLRVAGEGD  342
             F     C  CGG G I+    +C  C G G V +KKT+ V IP GV+DG R+R+ GEGD
Sbjct  60   FFSTCTCCPCCGGGGKII---DKCCKCCGGGGVVEKKTLEVKIPAGVDDGQRIRLRGEGD  116

Query  343  APATGTQAAPGARTQRGDLYVSIRVSPDHRFSRSGSDILYTASIPLTTALLGGEVTIPTL  402
            A   G           GDLYV IRV P   F R G D+  T  I LT ALLGG + +PTL
Sbjct  117  AGENGGPP--------GDLYVVIRVKPHPVFRRDGDDLYCTVPISLTEALLGGTIEVPTL  168

Query  403  DGEVKVKVATGTGTGDRITLSGMGMKKLGGRARGYTPTGDLKVEFKVAMP  452
            DG+VK+K+  GT  G  + L G GM +L G  R     GDL V  KV +P
Sbjct  169  DGKVKLKIPAGTQPGTVLRLKGKGMPRLKGGGR-----GDLYVTVKVEVP  213


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 104 bits (263),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 37/63 (59%), Positives = 45/63 (71%), Gaps = 1/63 (2%)

Query  84   DPYKVLGVDRNASAGDIKKAYYGLAKKYHPDTN-KDPKAKEKFAEAQSAYELLSDAKKRE  142
            D Y++LGV  +AS  +IKKAY  LA KYHPD N  DP+A+EKF E   AYE+LSD +KR 
Sbjct  1    DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRA  60

Query  143  TYD  145
             YD
Sbjct  61   IYD  63


>CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain.  The central cysteine-rich 
(CR) domain of DnaJ proteins contains four repeats 
of the motif CXXCXGXG where X is any amino acid. The isolated 
cysteine rich domain folds in zinc dependent fashion. 
Each set of two repeats binds one unit of zinc. Although this 
domain has been implicated in substrate binding, no evidence 
of specific interaction between the isolated DNAJ cysteine 
rich domain and various hydrophobic peptides has been found.
Length=65

 Score = 78.8 bits (195),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 28/67 (42%), Positives = 34/67 (51%), Gaps = 5/67 (7%)

Query  250  CGTCRGGGLKEGAKRSQCRQCNGSG--TRVHFMQGG-FQVAATCDACGGAGMIVPRGSEC  306
            C TC G G K G K + C  C G+G   RV     G FQ+ +TC  CGG G I+     C
Sbjct  1    CPTCNGSGAKPGTKPTTCPTCGGTGQVRRVQQTGPGFFQMQSTCPTCGGTGKIIK--DPC  58

Query  307  GTCRGNG  313
              C+G G
Sbjct  59   KKCKGKG  65



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0832    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00012229

Length=995
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460803 pfam03097, BRO1, BRO1-like domain. This domain is foun...  489     4e-166
CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain bindin...  311     5e-99 


>CDD:460803 pfam03097, BRO1, BRO1-like domain.  This domain is found in a 
number proteins including Rhophilin and BRO1. It is known to 
have a role in endosomal targeting. ESCRT-III subunit Snf7 
binds to a conserved hydrophobic patch in the BRO1 domain that 
is required for protein complex formation and for the protein-sorting 
function of BRO1.
Length=366

 Score = 489 bits (1261),  Expect = 4e-166, Method: Composition-based stats.
 Identities = 185/390 (47%), Positives = 240/390 (62%), Gaps = 27/390 (7%)

Query  6    MLSCPLKQTNEIDWIRPLKDYIRQSYGED-PERYNQECATLNRLRQDMRGAGKDSATGRD  64
            +LS PLK+T E+D  +PLK+YI  +YG   P  +  + A LN+LRQD      +  +G D
Sbjct  1    LLSIPLKKTEEVDLKKPLKNYISSTYGSQDPSSFEDDLAELNKLRQDAVRGANEDESGLD  60

Query  65   LLYRYYGQLELLDLRFPVDENHIKISFTWYDAF--THKPTSQYSLAYEKASIIFNISAVL  122
            LLY+YY QLELL+LRFP+D   I I FTWYDAF  + K  SQ SLA+EKAS++FNI+A+ 
Sbjct  61   LLYKYYAQLELLELRFPID-IQIGIEFTWYDAFGTSSKKVSQSSLAFEKASVLFNIAALY  119

Query  123  SCHAANQNRAEESGLKTAYHSFQASAGMFTYINENFLHAPSTDLNRETVKTLINITLAQA  182
            S  AA+QNR+ + GLK A   FQ +AG F Y+ ENFLHAPS DL+ ET+K L N+ LAQA
Sbjct  120  SQLAASQNRSTDEGLKRACKYFQQAAGCFQYLKENFLHAPSPDLSPETLKALSNLMLAQA  179

Query  183  QEVFLEKQVTDQKKAGFLAKLASQAAYLYSQAAEGIQEYAKGVFDKSWTIVVQAKAAHMA  242
            QE F EK + D KK   +AKLA+Q + LY +A E ++    G+ DK W   VQAKA H  
Sbjct  180  QECFWEKAINDNKKDSLIAKLAAQVSELYEEALEALKL--SGLIDKEWISHVQAKAHHFK  237

Query  243  SVASYYQALADSESNSHGVAIARLQLADKNSTAAMGWAKSFPTSVTPNSNLTSESGASLV  302
            ++A Y QAL D E+  +G  IARLQLA      A+                 S+    ++
Sbjct  238  ALAQYRQALDDEEAKKYGEEIARLQLALSLLKEALK----------------SDRYKKVL  281

Query  303  DTIKYHQANVQVKLATFVKDNDFIYHQPVPNEAGLSAVAKLPAAKAIPVSELYQGQDIQR  362
            + +K     V+ KL    KDNDFIYH+ VP+E+ L  +      K IP  ELY  Q    
Sbjct  282  EDLKGLLDVVEEKLKRAEKDNDFIYHERVPSESSLPPIKPASMVKPIPPLELYPFQ----  337

Query  363  IIGPDIFQKLVPMSVTETASLYDEEKAKLI  392
             IGPD+F+KLVP+SV E AS Y E KAKL+
Sbjct  338  -IGPDLFKKLVPLSVHEAASAYSERKAKLV  366


>CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV. 
 The binding of the LYPxL motif of late HIV p6Gag and EIAV 
p9Gag to this domain is necessary for viral budding.This domain 
is generally central between an N-terminal Bro1 domain, 
pfam03097 and a C-terminal proline-rich domain. The retroviruses 
thus used this domain to hijack the ESCRT system of the 
cell.
Length=294

 Score = 311 bits (799),  Expect = 5e-99, Method: Composition-based stats.
 Identities = 124/332 (37%), Positives = 176/332 (53%), Gaps = 43/332 (13%)

Query  431  TVDDEFRQWCQELA---GHQSFAKAFDTLQDRKGEILSQLDRCSKQLDLEESVCEKMRSK  487
             +    R+  +E+    G +   K+ D L   K      LD   K LD EES  E++R+K
Sbjct  1    GLPPSLREKAEEVRQQGGIERLEKSLDDLPKLKQRNREILDEAEKLLDEEESEDEQLRAK  60

Query  488  YGADWSQQPSARLNSTLRSDIRTYRDTINEASASDSQLLATFRQYETDFDEMRSAGETNE  547
            YG  W++ PS+ L +TLR++IR YR+ + +AS SDSQ+ + FR++E D + +      +E
Sbjct  61   YGTRWTRPPSSELTATLRAEIRKYREILEQASESDSQVRSKFREHEEDLELL---SGPDE  117

Query  548  ADVLFQRAMIKAGSKHGKGRNGVGSPYASTQEGSLLDDVYDEGSLSVAEQIARVESILKK  607
                F   +  +                               S SV EQ+A++  +L K
Sbjct  118  DLEAF---LPSSRRAK--------------------------NSPSVEEQVAKLRELLNK  148

Query  608  LNLVKRERSQVLKDLKEKVHNDDISNVLILNKKSI--AGQESQLFETELEKFRPHQNRLL  665
            LN +KRER Q+LKDLKEK  NDDIS  L+L K  +    QE QLFE ELEK+ P QNRL 
Sbjct  149  LNELKREREQLLKDLKEKARNDDISPKLLLEKARLIAPNQEEQLFEEELEKYDPLQNRLE  208

Query  666  QANHKQAALMKELTKVYGDLLQDKRVRSEQSKYEAITRQRNTVMARYKKIYDAFNGLLSG  725
            Q  HKQ  L+KE+T+   + LQDKRV SE        RQR   + + +  YD +  L+S 
Sbjct  209  QNLHKQEELLKEITEANNEFLQDKRVDSE------KQRQREEALQKLENAYDKYKELVSN  262

Query  726  IAQAQTFYTEMVETVESLKKNVETFINNRRSE  757
            + +   FY ++ E +E L K V+ F+N RRSE
Sbjct  263  LQEGLKFYNDLTEILEKLLKKVKDFVNARRSE  294



Lambda      K        H        a         alpha
   0.312    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1272872524


Query= TCONS_00012230

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain. This family...  237     1e-76
CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  104     2e-28
CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The cen...  78.8    7e-19


>CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain.  This family consists 
of the C terminal region of the DnaJ protein. It is always 
found associated with pfam00226 and pfam00684. DnaJ is a 
chaperone associated with the Hsp70 heat-shock system involved 
in protein folding and renaturation after stress. The two 
C-terminal domains CTDI and CTDII, both incorporated in this 
family are necessary for maintaining the J-domains in their 
specific relative positions. Structural analysis of Structure 
1nlt shows that pfam00684 is nested within this DnaJ C-terminal 
region.
Length=213

 Score = 237 bits (607),  Expect = 1e-76, Method: Composition-based stats.
 Identities = 97/230 (42%), Positives = 119/230 (52%), Gaps = 17/230 (7%)

Query  223  IEVQTNISFMEAAKGTSKDVVITPLVECGTCRGGGLKEGAKRSQCRQCNGSGTRVHFMQG  282
            +E +  ++  EA  G +K + IT  V C TC G G K G     C  C G G       G
Sbjct  1    LEYELELTLEEAYFGCTKKIKITRNVICDTCGGSGAKPGTSPKTCPCCGGGGQVRR-QFG  59

Query  283  GFQVAATCDACGGAGMIVPRGSECGTCRGNGVVRDKKTITVDIPGGVEDGMRLRVAGEGD  342
             F     C  CGG G I+    +C  C G G V +KKT+ V IP GV+DG R+R+ GEGD
Sbjct  60   FFSTCTCCPCCGGGGKII---DKCCKCCGGGGVVEKKTLEVKIPAGVDDGQRIRLRGEGD  116

Query  343  APATGTQAAPGARTQRGDLYVSIRVSPDHRFSRSGSDILYTASIPLTTALLGGEVTIPTL  402
            A   G           GDLYV IRV P   F R G D+  T  I LT ALLGG + +PTL
Sbjct  117  AGENGGPP--------GDLYVVIRVKPHPVFRRDGDDLYCTVPISLTEALLGGTIEVPTL  168

Query  403  DGEVKVKVATGTGTGDRITLSGMGMKKLGGRARGYTPTGDLKVEFKVAMP  452
            DG+VK+K+  GT  G  + L G GM +L G  R     GDL V  KV +P
Sbjct  169  DGKVKLKIPAGTQPGTVLRLKGKGMPRLKGGGR-----GDLYVTVKVEVP  213


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 104 bits (263),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 37/63 (59%), Positives = 45/63 (71%), Gaps = 1/63 (2%)

Query  84   DPYKVLGVDRNASAGDIKKAYYGLAKKYHPDTN-KDPKAKEKFAEAQSAYELLSDAKKRE  142
            D Y++LGV  +AS  +IKKAY  LA KYHPD N  DP+A+EKF E   AYE+LSD +KR 
Sbjct  1    DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRA  60

Query  143  TYD  145
             YD
Sbjct  61   IYD  63


>CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain.  The central cysteine-rich 
(CR) domain of DnaJ proteins contains four repeats 
of the motif CXXCXGXG where X is any amino acid. The isolated 
cysteine rich domain folds in zinc dependent fashion. 
Each set of two repeats binds one unit of zinc. Although this 
domain has been implicated in substrate binding, no evidence 
of specific interaction between the isolated DNAJ cysteine 
rich domain and various hydrophobic peptides has been found.
Length=65

 Score = 78.8 bits (195),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 28/67 (42%), Positives = 34/67 (51%), Gaps = 5/67 (7%)

Query  250  CGTCRGGGLKEGAKRSQCRQCNGSG--TRVHFMQGG-FQVAATCDACGGAGMIVPRGSEC  306
            C TC G G K G K + C  C G+G   RV     G FQ+ +TC  CGG G I+     C
Sbjct  1    CPTCNGSGAKPGTKPTTCPTCGGTGQVRRVQQTGPGFFQMQSTCPTCGGTGKIIK--DPC  58

Query  307  GTCRGNG  313
              C+G G
Sbjct  59   KKCKGKG  65



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00012231

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain. This family...  218     2e-71
CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The cen...  72.2    4e-17


>CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain.  This family consists 
of the C terminal region of the DnaJ protein. It is always 
found associated with pfam00226 and pfam00684. DnaJ is a 
chaperone associated with the Hsp70 heat-shock system involved 
in protein folding and renaturation after stress. The two 
C-terminal domains CTDI and CTDII, both incorporated in this 
family are necessary for maintaining the J-domains in their 
specific relative positions. Structural analysis of Structure 
1nlt shows that pfam00684 is nested within this DnaJ C-terminal 
region.
Length=213

 Score = 218 bits (557),  Expect = 2e-71, Method: Composition-based stats.
 Identities = 96/221 (43%), Positives = 114/221 (52%), Gaps = 17/221 (8%)

Query  1    MEAAKGTSKDVVITPLVECGTCRGGGLKEGAKRSQCRQCNGSGTRVHFMQGGFQVAATCD  60
             EA  G +K + IT  V C TC G G K G     C  C G G       G F     C 
Sbjct  10   EEAYFGCTKKIKITRNVICDTCGGSGAKPGTSPKTCPCCGGGGQVRR-QFGFFSTCTCCP  68

Query  61   ACGGAGMIVPRGSECGTCRGNGVVRDKKTITVDIPGGVEDGMRLRVAGEGDAPATGTQAA  120
             CGG G I+    +C  C G G V +KKT+ V IP GV+DG R+R+ GEGDA   G    
Sbjct  69   CCGGGGKII---DKCCKCCGGGGVVEKKTLEVKIPAGVDDGQRIRLRGEGDAGENGGPP-  124

Query  121  PGARTQRGDLYVSIRVSPDHRFSRSGSDILYTASIPLTTALLGGEVTIPTLDGEVKVKVA  180
                   GDLYV IRV P   F R G D+  T  I LT ALLGG + +PTLDG+VK+K+ 
Sbjct  125  -------GDLYVVIRVKPHPVFRRDGDDLYCTVPISLTEALLGGTIEVPTLDGKVKLKIP  177

Query  181  TGTGTGDRITLSGMGMKKLGGRARGYTPTGDLKVEFKVAMP  221
             GT  G  + L G GM +L G  R     GDL V  KV +P
Sbjct  178  AGTQPGTVLRLKGKGMPRLKGGGR-----GDLYVTVKVEVP  213


>CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain.  The central cysteine-rich 
(CR) domain of DnaJ proteins contains four repeats 
of the motif CXXCXGXG where X is any amino acid. The isolated 
cysteine rich domain folds in zinc dependent fashion. 
Each set of two repeats binds one unit of zinc. Although this 
domain has been implicated in substrate binding, no evidence 
of specific interaction between the isolated DNAJ cysteine 
rich domain and various hydrophobic peptides has been found.
Length=65

 Score = 72.2 bits (178),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 28/67 (42%), Positives = 34/67 (51%), Gaps = 5/67 (7%)

Query  19  CGTCRGGGLKEGAKRSQCRQCNGSG--TRVHFMQGG-FQVAATCDACGGAGMIVPRGSEC  75
           C TC G G K G K + C  C G+G   RV     G FQ+ +TC  CGG G I+     C
Sbjct  1   CPTCNGSGAKPGTKPTTCPTCGGTGQVRRVQQTGPGFFQMQSTCPTCGGTGKIIK--DPC  58

Query  76  GTCRGNG  82
             C+G G
Sbjct  59  KKCKGKG  65



Lambda      K        H        a         alpha
   0.312    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00018167

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain. This family...  212     5e-70
CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The cen...  70.3    1e-16


>CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain.  This family consists 
of the C terminal region of the DnaJ protein. It is always 
found associated with pfam00226 and pfam00684. DnaJ is a 
chaperone associated with the Hsp70 heat-shock system involved 
in protein folding and renaturation after stress. The two 
C-terminal domains CTDI and CTDII, both incorporated in this 
family are necessary for maintaining the J-domains in their 
specific relative positions. Structural analysis of Structure 
1nlt shows that pfam00684 is nested within this DnaJ C-terminal 
region.
Length=213

 Score = 212 bits (542),  Expect = 5e-70, Method: Composition-based stats.
 Identities = 96/221 (43%), Positives = 114/221 (52%), Gaps = 17/221 (8%)

Query  1    MEAAKGTSKDVVITPLVECGTCRGGGLKEGAKRSQCRQCNGSGTRVHFMQGGFQVAATCD  60
             EA  G +K + IT  V C TC G G K G     C  C G G       G F     C 
Sbjct  10   EEAYFGCTKKIKITRNVICDTCGGSGAKPGTSPKTCPCCGGGGQVRR-QFGFFSTCTCCP  68

Query  61   ACGGAGMIVPRGSECGTCRGNGVVRDKKTITVDIPGGVEDGMRLRVAGEGDAPATGTQAA  120
             CGG G I+    +C  C G G V +KKT+ V IP GV+DG R+R+ GEGDA   G    
Sbjct  69   CCGGGGKII---DKCCKCCGGGGVVEKKTLEVKIPAGVDDGQRIRLRGEGDAGENGGPP-  124

Query  121  PGARTQRGDLYVSIRVSPDHRFSRSGSDILYTASIPLTTALLGGEVTIPTLDGEVKVKVA  180
                   GDLYV IRV P   F R G D+  T  I LT ALLGG + +PTLDG+VK+K+ 
Sbjct  125  -------GDLYVVIRVKPHPVFRRDGDDLYCTVPISLTEALLGGTIEVPTLDGKVKLKIP  177

Query  181  TGTGTGDRITLSGMGMKKLGGRARGYTPTGDLKVEFKVAMP  221
             GT  G  + L G GM +L G  R     GDL V  KV +P
Sbjct  178  AGTQPGTVLRLKGKGMPRLKGGGR-----GDLYVTVKVEVP  213


>CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain.  The central cysteine-rich 
(CR) domain of DnaJ proteins contains four repeats 
of the motif CXXCXGXG where X is any amino acid. The isolated 
cysteine rich domain folds in zinc dependent fashion. 
Each set of two repeats binds one unit of zinc. Although this 
domain has been implicated in substrate binding, no evidence 
of specific interaction between the isolated DNAJ cysteine 
rich domain and various hydrophobic peptides has been found.
Length=65

 Score = 70.3 bits (173),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 28/67 (42%), Positives = 34/67 (51%), Gaps = 5/67 (7%)

Query  19  CGTCRGGGLKEGAKRSQCRQCNGSG--TRVHFMQGG-FQVAATCDACGGAGMIVPRGSEC  75
           C TC G G K G K + C  C G+G   RV     G FQ+ +TC  CGG G I+     C
Sbjct  1   CPTCNGSGAKPGTKPTTCPTCGGTGQVRRVQQTGPGFFQMQSTCPTCGGTGKIIK--DPC  58

Query  76  GTCRGNG  82
             C+G G
Sbjct  59  KKCKGKG  65



Lambda      K        H        a         alpha
   0.317    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00018168

Length=995
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460803 pfam03097, BRO1, BRO1-like domain. This domain is foun...  489     4e-166
CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain bindin...  311     5e-99 


>CDD:460803 pfam03097, BRO1, BRO1-like domain.  This domain is found in a 
number proteins including Rhophilin and BRO1. It is known to 
have a role in endosomal targeting. ESCRT-III subunit Snf7 
binds to a conserved hydrophobic patch in the BRO1 domain that 
is required for protein complex formation and for the protein-sorting 
function of BRO1.
Length=366

 Score = 489 bits (1261),  Expect = 4e-166, Method: Composition-based stats.
 Identities = 185/390 (47%), Positives = 240/390 (62%), Gaps = 27/390 (7%)

Query  6    MLSCPLKQTNEIDWIRPLKDYIRQSYGED-PERYNQECATLNRLRQDMRGAGKDSATGRD  64
            +LS PLK+T E+D  +PLK+YI  +YG   P  +  + A LN+LRQD      +  +G D
Sbjct  1    LLSIPLKKTEEVDLKKPLKNYISSTYGSQDPSSFEDDLAELNKLRQDAVRGANEDESGLD  60

Query  65   LLYRYYGQLELLDLRFPVDENHIKISFTWYDAF--THKPTSQYSLAYEKASIIFNISAVL  122
            LLY+YY QLELL+LRFP+D   I I FTWYDAF  + K  SQ SLA+EKAS++FNI+A+ 
Sbjct  61   LLYKYYAQLELLELRFPID-IQIGIEFTWYDAFGTSSKKVSQSSLAFEKASVLFNIAALY  119

Query  123  SCHAANQNRAEESGLKTAYHSFQASAGMFTYINENFLHAPSTDLNRETVKTLINITLAQA  182
            S  AA+QNR+ + GLK A   FQ +AG F Y+ ENFLHAPS DL+ ET+K L N+ LAQA
Sbjct  120  SQLAASQNRSTDEGLKRACKYFQQAAGCFQYLKENFLHAPSPDLSPETLKALSNLMLAQA  179

Query  183  QEVFLEKQVTDQKKAGFLAKLASQAAYLYSQAAEGIQEYAKGVFDKSWTIVVQAKAAHMA  242
            QE F EK + D KK   +AKLA+Q + LY +A E ++    G+ DK W   VQAKA H  
Sbjct  180  QECFWEKAINDNKKDSLIAKLAAQVSELYEEALEALKL--SGLIDKEWISHVQAKAHHFK  237

Query  243  SVASYYQALADSESNSHGVAIARLQLADKNSTAAMGWAKSFPTSVTPNSNLTSESGASLV  302
            ++A Y QAL D E+  +G  IARLQLA      A+                 S+    ++
Sbjct  238  ALAQYRQALDDEEAKKYGEEIARLQLALSLLKEALK----------------SDRYKKVL  281

Query  303  DTIKYHQANVQVKLATFVKDNDFIYHQPVPNEAGLSAVAKLPAAKAIPVSELYQGQDIQR  362
            + +K     V+ KL    KDNDFIYH+ VP+E+ L  +      K IP  ELY  Q    
Sbjct  282  EDLKGLLDVVEEKLKRAEKDNDFIYHERVPSESSLPPIKPASMVKPIPPLELYPFQ----  337

Query  363  IIGPDIFQKLVPMSVTETASLYDEEKAKLI  392
             IGPD+F+KLVP+SV E AS Y E KAKL+
Sbjct  338  -IGPDLFKKLVPLSVHEAASAYSERKAKLV  366


>CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV. 
 The binding of the LYPxL motif of late HIV p6Gag and EIAV 
p9Gag to this domain is necessary for viral budding.This domain 
is generally central between an N-terminal Bro1 domain, 
pfam03097 and a C-terminal proline-rich domain. The retroviruses 
thus used this domain to hijack the ESCRT system of the 
cell.
Length=294

 Score = 311 bits (799),  Expect = 5e-99, Method: Composition-based stats.
 Identities = 124/332 (37%), Positives = 176/332 (53%), Gaps = 43/332 (13%)

Query  431  TVDDEFRQWCQELA---GHQSFAKAFDTLQDRKGEILSQLDRCSKQLDLEESVCEKMRSK  487
             +    R+  +E+    G +   K+ D L   K      LD   K LD EES  E++R+K
Sbjct  1    GLPPSLREKAEEVRQQGGIERLEKSLDDLPKLKQRNREILDEAEKLLDEEESEDEQLRAK  60

Query  488  YGADWSQQPSARLNSTLRSDIRTYRDTINEASASDSQLLATFRQYETDFDEMRSAGETNE  547
            YG  W++ PS+ L +TLR++IR YR+ + +AS SDSQ+ + FR++E D + +      +E
Sbjct  61   YGTRWTRPPSSELTATLRAEIRKYREILEQASESDSQVRSKFREHEEDLELL---SGPDE  117

Query  548  ADVLFQRAMIKAGSKHGKGRNGVGSPYASTQEGSLLDDVYDEGSLSVAEQIARVESILKK  607
                F   +  +                               S SV EQ+A++  +L K
Sbjct  118  DLEAF---LPSSRRAK--------------------------NSPSVEEQVAKLRELLNK  148

Query  608  LNLVKRERSQVLKDLKEKVHNDDISNVLILNKKSI--AGQESQLFETELEKFRPHQNRLL  665
            LN +KRER Q+LKDLKEK  NDDIS  L+L K  +    QE QLFE ELEK+ P QNRL 
Sbjct  149  LNELKREREQLLKDLKEKARNDDISPKLLLEKARLIAPNQEEQLFEEELEKYDPLQNRLE  208

Query  666  QANHKQAALMKELTKVYGDLLQDKRVRSEQSKYEAITRQRNTVMARYKKIYDAFNGLLSG  725
            Q  HKQ  L+KE+T+   + LQDKRV SE        RQR   + + +  YD +  L+S 
Sbjct  209  QNLHKQEELLKEITEANNEFLQDKRVDSE------KQRQREEALQKLENAYDKYKELVSN  262

Query  726  IAQAQTFYTEMVETVESLKKNVETFINNRRSE  757
            + +   FY ++ E +E L K V+ F+N RRSE
Sbjct  263  LQEGLKFYNDLTEILEKLLKKVKDFVNARRSE  294



Lambda      K        H        a         alpha
   0.312    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1272872524


Query= TCONS_00018169

Length=639
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460803 pfam03097, BRO1, BRO1-like domain. This domain is foun...  479     8e-167
CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain bindin...  157     4e-44 


>CDD:460803 pfam03097, BRO1, BRO1-like domain.  This domain is found in a 
number proteins including Rhophilin and BRO1. It is known to 
have a role in endosomal targeting. ESCRT-III subunit Snf7 
binds to a conserved hydrophobic patch in the BRO1 domain that 
is required for protein complex formation and for the protein-sorting 
function of BRO1.
Length=366

 Score = 479 bits (1235),  Expect = 8e-167, Method: Composition-based stats.
 Identities = 185/390 (47%), Positives = 240/390 (62%), Gaps = 27/390 (7%)

Query  6    MLSCPLKQTNEIDWIRPLKDYIRQSYGED-PERYNQECATLNRLRQDMRGAGKDSATGRD  64
            +LS PLK+T E+D  +PLK+YI  +YG   P  +  + A LN+LRQD      +  +G D
Sbjct  1    LLSIPLKKTEEVDLKKPLKNYISSTYGSQDPSSFEDDLAELNKLRQDAVRGANEDESGLD  60

Query  65   LLYRYYGQLELLDLRFPVDENHIKISFTWYDAF--THKPTSQYSLAYEKASIIFNISAVL  122
            LLY+YY QLELL+LRFP+D   I I FTWYDAF  + K  SQ SLA+EKAS++FNI+A+ 
Sbjct  61   LLYKYYAQLELLELRFPID-IQIGIEFTWYDAFGTSSKKVSQSSLAFEKASVLFNIAALY  119

Query  123  SCHAANQNRAEESGLKTAYHSFQASAGMFTYINENFLHAPSTDLNRETVKTLINITLAQA  182
            S  AA+QNR+ + GLK A   FQ +AG F Y+ ENFLHAPS DL+ ET+K L N+ LAQA
Sbjct  120  SQLAASQNRSTDEGLKRACKYFQQAAGCFQYLKENFLHAPSPDLSPETLKALSNLMLAQA  179

Query  183  QEVFLEKQVTDQKKAGFLAKLASQAAYLYSQAAEGIQEYAKGVFDKSWTIVVQAKAAHMA  242
            QE F EK + D KK   +AKLA+Q + LY +A E ++    G+ DK W   VQAKA H  
Sbjct  180  QECFWEKAINDNKKDSLIAKLAAQVSELYEEALEALKL--SGLIDKEWISHVQAKAHHFK  237

Query  243  SVASYYQALADSESNSHGVAIARLQLADKNSTAAMGWAKSFPTSVTPNSNLTSESGASLV  302
            ++A Y QAL D E+  +G  IARLQLA      A+                 S+    ++
Sbjct  238  ALAQYRQALDDEEAKKYGEEIARLQLALSLLKEALK----------------SDRYKKVL  281

Query  303  DTIKYHQANVQVKLATFVKDNDFIYHQPVPNEAGLSAVAKLPAAKAIPVSELYQGQDIQR  362
            + +K     V+ KL    KDNDFIYH+ VP+E+ L  +      K IP  ELY  Q    
Sbjct  282  EDLKGLLDVVEEKLKRAEKDNDFIYHERVPSESSLPPIKPASMVKPIPPLELYPFQ----  337

Query  363  IIGPDIFQKLVPMSVTETASLYDEEKAKLI  392
             IGPD+F+KLVP+SV E AS Y E KAKL+
Sbjct  338  -IGPDLFKKLVPLSVHEAASAYSERKAKLV  366


>CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV. 
 The binding of the LYPxL motif of late HIV p6Gag and EIAV 
p9Gag to this domain is necessary for viral budding.This domain 
is generally central between an N-terminal Bro1 domain, 
pfam03097 and a C-terminal proline-rich domain. The retroviruses 
thus used this domain to hijack the ESCRT system of the 
cell.
Length=294

 Score = 157 bits (400),  Expect = 4e-44, Method: Composition-based stats.
 Identities = 66/200 (33%), Positives = 99/200 (50%), Gaps = 35/200 (18%)

Query  431  TVDDEFRQWCQELA---GHQSFAKAFDTLQDRKGEILSQLDRCSKQLDLEESVCEKMRSK  487
             +    R+  +E+    G +   K+ D L   K      LD   K LD EES  E++R+K
Sbjct  1    GLPPSLREKAEEVRQQGGIERLEKSLDDLPKLKQRNREILDEAEKLLDEEESEDEQLRAK  60

Query  488  YGADWSQQPSARLNSTLRSDIRTYRDTINEASASDSQLLATFRQYETDFDEMRSAGETNE  547
            YG  W++ PS+ L +TLR++IR YR+ + +AS SDSQ+ + FR++E D + +      +E
Sbjct  61   YGTRWTRPPSSELTATLRAEIRKYREILEQASESDSQVRSKFREHEEDLELL---SGPDE  117

Query  548  ADVLFQRAMIKAGSKHGKGRNGVGSPYASTQEGSLLDDVYDEGSLSVAEQIARVESILKK  607
                F   +  +                               S SV EQ+A++  +L K
Sbjct  118  DLEAF---LPSSRRAK--------------------------NSPSVEEQVAKLRELLNK  148

Query  608  LNLVKRERSQVLKDLKEKVR  627
            LN +KRER Q+LKDLKEK R
Sbjct  149  LNELKREREQLLKDLKEKAR  168



Lambda      K        H        a         alpha
   0.314    0.128    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 805235340


Query= TCONS_00018170

Length=940
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460803 pfam03097, BRO1, BRO1-like domain. This domain is foun...  363     4e-118
CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain bindin...  312     1e-99 


>CDD:460803 pfam03097, BRO1, BRO1-like domain.  This domain is found in a 
number proteins including Rhophilin and BRO1. It is known to 
have a role in endosomal targeting. ESCRT-III subunit Snf7 
binds to a conserved hydrophobic patch in the BRO1 domain that 
is required for protein complex formation and for the protein-sorting 
function of BRO1.
Length=366

 Score = 363 bits (934),  Expect = 4e-118, Method: Composition-based stats.
 Identities = 140/301 (47%), Positives = 181/301 (60%), Gaps = 25/301 (8%)

Query  39   YDAF--THKPTSQYSLAYEKASIIFNISAVLSCHAANQNRAEESGLKTAYHSFQASAGMF  96
            YDAF  + K  SQ SLA+EKAS++FNI+A+ S  AA+QNR+ + GLK A   FQ +AG F
Sbjct  89   YDAFGTSSKKVSQSSLAFEKASVLFNIAALYSQLAASQNRSTDEGLKRACKYFQQAAGCF  148

Query  97   TYINENFLHAPSTDLNRETVKTLINITLAQAQEVFLEKQVTDQKKAGFLAKLASQAAYLY  156
             Y+ ENFLHAPS DL+ ET+K L N+ LAQAQE F EK + D KK   +AKLA+Q + LY
Sbjct  149  QYLKENFLHAPSPDLSPETLKALSNLMLAQAQECFWEKAINDNKKDSLIAKLAAQVSELY  208

Query  157  SQAAEGIQEYAKGVFDKSWTIVVQAKAAHMASVASYYQALADSESNSHGVAIARLQLADK  216
             +A E ++    G+ DK W   VQAKA H  ++A Y QAL D E+  +G  IARLQLA  
Sbjct  209  EEALEALKL--SGLIDKEWISHVQAKAHHFKALAQYRQALDDEEAKKYGEEIARLQLALS  266

Query  217  NSTAAMGWAKSFPTSVTPNSNLTSESGASLVDTIKYHQANVQVKLATFVKDNDFIYHQPV  276
                A+                 S+    +++ +K     V+ KL    KDNDFIYH+ V
Sbjct  267  LLKEALK----------------SDRYKKVLEDLKGLLDVVEEKLKRAEKDNDFIYHERV  310

Query  277  PNEAGLSAVAKLPAAKAIPVSELYQGQDIQRIIGPDIFQKLVPMSVTETASLYDEEKAKL  336
            P+E+ L  +      K IP  ELY  Q     IGPD+F+KLVP+SV E AS Y E KAKL
Sbjct  311  PSESSLPPIKPASMVKPIPPLELYPFQ-----IGPDLFKKLVPLSVHEAASAYSERKAKL  365

Query  337  I  337
            +
Sbjct  366  V  366


>CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV. 
 The binding of the LYPxL motif of late HIV p6Gag and EIAV 
p9Gag to this domain is necessary for viral budding.This domain 
is generally central between an N-terminal Bro1 domain, 
pfam03097 and a C-terminal proline-rich domain. The retroviruses 
thus used this domain to hijack the ESCRT system of the 
cell.
Length=294

 Score = 312 bits (801),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 124/332 (37%), Positives = 176/332 (53%), Gaps = 43/332 (13%)

Query  376  TVDDEFRQWCQELA---GHQSFAKAFDTLQDRKGEILSQLDRCSKQLDLEESVCEKMRSK  432
             +    R+  +E+    G +   K+ D L   K      LD   K LD EES  E++R+K
Sbjct  1    GLPPSLREKAEEVRQQGGIERLEKSLDDLPKLKQRNREILDEAEKLLDEEESEDEQLRAK  60

Query  433  YGADWSQQPSARLNSTLRSDIRTYRDTINEASASDSQLLATFRQYETDFDEMRSAGETNE  492
            YG  W++ PS+ L +TLR++IR YR+ + +AS SDSQ+ + FR++E D + +      +E
Sbjct  61   YGTRWTRPPSSELTATLRAEIRKYREILEQASESDSQVRSKFREHEEDLELL---SGPDE  117

Query  493  ADVLFQRAMIKAGSKHGKGRNGVGSPYASTQEGSLLDDVYDEGSLSVAEQIARVESILKK  552
                F   +  +                               S SV EQ+A++  +L K
Sbjct  118  DLEAF---LPSSRRAK--------------------------NSPSVEEQVAKLRELLNK  148

Query  553  LNLVKRERSQVLKDLKEKVHNDDISNVLILNKKSI--AGQESQLFETELEKFRPHQNRLL  610
            LN +KRER Q+LKDLKEK  NDDIS  L+L K  +    QE QLFE ELEK+ P QNRL 
Sbjct  149  LNELKREREQLLKDLKEKARNDDISPKLLLEKARLIAPNQEEQLFEEELEKYDPLQNRLE  208

Query  611  QANHKQAALMKELTKVYGDLLQDKRVRSEQSKYEAITRQRNTVMARYKKIYDAFNGLLSG  670
            Q  HKQ  L+KE+T+   + LQDKRV SE        RQR   + + +  YD +  L+S 
Sbjct  209  QNLHKQEELLKEITEANNEFLQDKRVDSE------KQRQREEALQKLENAYDKYKELVSN  262

Query  671  IAQAQTFYTEMVETVESLKKNVETFINNRRSE  702
            + +   FY ++ E +E L K V+ F+N RRSE
Sbjct  263  LQEGLKFYNDLTEILEKLLKKVKDFVNARRSE  294



Lambda      K        H        a         alpha
   0.311    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1194999344


Query= TCONS_00012233

Length=976
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460803 pfam03097, BRO1, BRO1-like domain. This domain is foun...  491     3e-167
CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain bindin...  310     8e-99 


>CDD:460803 pfam03097, BRO1, BRO1-like domain.  This domain is found in a 
number proteins including Rhophilin and BRO1. It is known to 
have a role in endosomal targeting. ESCRT-III subunit Snf7 
binds to a conserved hydrophobic patch in the BRO1 domain that 
is required for protein complex formation and for the protein-sorting 
function of BRO1.
Length=366

 Score = 491 bits (1267),  Expect = 3e-167, Method: Composition-based stats.
 Identities = 184/374 (49%), Positives = 239/374 (64%), Gaps = 14/374 (4%)

Query  6    MLSCPLKQTNEIDWIRPLKDYIRQSYGED-PERYNQECATLNRLRQDMRGAGKDSATGRD  64
            +LS PLK+T E+D  +PLK+YI  +YG   P  +  + A LN+LRQD      +  +G D
Sbjct  1    LLSIPLKKTEEVDLKKPLKNYISSTYGSQDPSSFEDDLAELNKLRQDAVRGANEDESGLD  60

Query  65   LLYRYYGQLELLDLRFPVDENHIKISFTWYDAF--THKPTSQYSLAYEKASIIFNISAVL  122
            LLY+YY QLELL+LRFP+D   I I FTWYDAF  + K  SQ SLA+EKAS++FNI+A+ 
Sbjct  61   LLYKYYAQLELLELRFPID-IQIGIEFTWYDAFGTSSKKVSQSSLAFEKASVLFNIAALY  119

Query  123  SCHAANQNRAEESGLKTAYHSFQASAGMFTYINENFLHAPSTDLNRETVKTLINITLAQA  182
            S  AA+QNR+ + GLK A   FQ +AG F Y+ ENFLHAPS DL+ ET+K L N+ LAQA
Sbjct  120  SQLAASQNRSTDEGLKRACKYFQQAAGCFQYLKENFLHAPSPDLSPETLKALSNLMLAQA  179

Query  183  QEVFLEKQVTDQKKAGFLAKLASQAAYLYSQAAEGIQEYAKGVFDKSWTIVVQAKAAHMA  242
            QE F EK + D KK   +AKLA+Q + LY +A E ++    G+ DK W   VQAKA H  
Sbjct  180  QECFWEKAINDNKKDSLIAKLAAQVSELYEEALEALKL--SGLIDKEWISHVQAKAHHFK  237

Query  243  SVASYYQALADSESNSHGVAIARLQLADKNSTAAMG---WANLVDTIKYHQANVQVKLAT  299
            ++A Y QAL D E+  +G  IARLQLA      A+    +  +++ +K     V+ KL  
Sbjct  238  ALAQYRQALDDEEAKKYGEEIARLQLALSLLKEALKSDRYKKVLEDLKGLLDVVEEKLKR  297

Query  300  FVKDNDFIYHQPVPNEAGLSAVAKLPAAKAIPVSELYQGQDIQRIIGPDIFQKLVPMSVT  359
              KDNDFIYH+ VP+E+ L  +      K IP  ELY  Q     IGPD+F+KLVP+SV 
Sbjct  298  AEKDNDFIYHERVPSESSLPPIKPASMVKPIPPLELYPFQ-----IGPDLFKKLVPLSVH  352

Query  360  ETASLYDEEKAKLI  373
            E AS Y E KAKL+
Sbjct  353  EAASAYSERKAKLV  366


>CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV. 
 The binding of the LYPxL motif of late HIV p6Gag and EIAV 
p9Gag to this domain is necessary for viral budding.This domain 
is generally central between an N-terminal Bro1 domain, 
pfam03097 and a C-terminal proline-rich domain. The retroviruses 
thus used this domain to hijack the ESCRT system of the 
cell.
Length=294

 Score = 310 bits (797),  Expect = 8e-99, Method: Composition-based stats.
 Identities = 124/332 (37%), Positives = 176/332 (53%), Gaps = 43/332 (13%)

Query  412  TVDDEFRQWCQELA---GHQSFAKAFDTLQDRKGEILSQLDRCSKQLDLEESVCEKMRSK  468
             +    R+  +E+    G +   K+ D L   K      LD   K LD EES  E++R+K
Sbjct  1    GLPPSLREKAEEVRQQGGIERLEKSLDDLPKLKQRNREILDEAEKLLDEEESEDEQLRAK  60

Query  469  YGADWSQQPSARLNSTLRSDIRTYRDTINEASASDSQLLATFRQYETDFDEMRSAGETNE  528
            YG  W++ PS+ L +TLR++IR YR+ + +AS SDSQ+ + FR++E D + +      +E
Sbjct  61   YGTRWTRPPSSELTATLRAEIRKYREILEQASESDSQVRSKFREHEEDLELL---SGPDE  117

Query  529  ADVLFQRAMIKAGSKHGKGRNGVGSPYASTQEGSLLDDVYDEGSLSVAEQIARVESILKK  588
                F   +  +                               S SV EQ+A++  +L K
Sbjct  118  DLEAF---LPSSRRAK--------------------------NSPSVEEQVAKLRELLNK  148

Query  589  LNLVKRERSQVLKDLKEKVHNDDISNVLILNKKSI--AGQESQLFETELEKFRPHQNRLL  646
            LN +KRER Q+LKDLKEK  NDDIS  L+L K  +    QE QLFE ELEK+ P QNRL 
Sbjct  149  LNELKREREQLLKDLKEKARNDDISPKLLLEKARLIAPNQEEQLFEEELEKYDPLQNRLE  208

Query  647  QANHKQAALMKELTKVYGDLLQDKRVRSEQSKYEAITRQRNTVMARYKKIYDAFNGLLSG  706
            Q  HKQ  L+KE+T+   + LQDKRV SE        RQR   + + +  YD +  L+S 
Sbjct  209  QNLHKQEELLKEITEANNEFLQDKRVDSE------KQRQREEALQKLENAYDKYKELVSN  262

Query  707  IAQAQTFYTEMVETVESLKKNVETFINNRRSE  738
            + +   FY ++ E +E L K V+ F+N RRSE
Sbjct  263  LQEGLKFYNDLTEILEKLLKKVKDFVNARRSE  294



Lambda      K        H        a         alpha
   0.312    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1245970880


Query= TCONS_00018172

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00012234

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00018173

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00018176

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00012235

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00012236

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00018177

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00018178

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00012237

Length=424


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00012238

Length=424


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00012240

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00012239

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00012241

Length=424


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00012242

Length=250


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00012244

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00012243

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00012245

Length=250


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00018182

Length=152
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426258 pfam01423, LSM, LSM domain. The LSM domain contains Sm...  71.4    5e-18


>CDD:426258 pfam01423, LSM, LSM domain.  The LSM domain contains Sm proteins 
as well as other related LSM (Like Sm) proteins. The U1, 
U2, U4/U6, and U5 small nuclear ribonucleoprotein particles 
(snRNPs) involved in pre-mRNA splicing contain seven Sm proteins 
(B/B', D1, D2, D3, E, F and G) in common, which assemble 
around the Sm site present in four of the major spliceosomal 
small nuclear RNAs. The U6 snRNP binds to the LSM (Like 
Sm) proteins. Sm proteins are also found in archaebacteria, 
which do not have any splicing apparatus suggesting a more general 
role for Sm proteins. All Sm proteins contain a common 
sequence motif in two segments, Sm1 and Sm2, separated by 
a short variable linker. This family also includes the bacterial 
Hfq (host factor Q) proteins. Hfq are also RNA-binding 
proteins, that form hexameric rings.
Length=66

 Score = 71.4 bits (176),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 40/67 (60%), Gaps = 3/67 (4%)

Query  53   LLDLTDKKLVLVLRDGRKLIGVLRSWDQFANLVLQDTIERLYAGNLYADIPRGIFLVRGE  112
            L  L  K++++ L++GR+L G L+ +DQF NLVL D  E +  G        G+ L+RG 
Sbjct  3    LKKLLGKRVLVELKNGRELRGTLKGFDQFMNLVLDDVEETIKDGE---VRKLGLVLIRGN  59

Query  113  NVLLLGE  119
            N++L+  
Sbjct  60   NIVLISP  66



Lambda      K        H        a         alpha
   0.318    0.138    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00018181

Length=152
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426258 pfam01423, LSM, LSM domain. The LSM domain contains Sm...  71.4    5e-18


>CDD:426258 pfam01423, LSM, LSM domain.  The LSM domain contains Sm proteins 
as well as other related LSM (Like Sm) proteins. The U1, 
U2, U4/U6, and U5 small nuclear ribonucleoprotein particles 
(snRNPs) involved in pre-mRNA splicing contain seven Sm proteins 
(B/B', D1, D2, D3, E, F and G) in common, which assemble 
around the Sm site present in four of the major spliceosomal 
small nuclear RNAs. The U6 snRNP binds to the LSM (Like 
Sm) proteins. Sm proteins are also found in archaebacteria, 
which do not have any splicing apparatus suggesting a more general 
role for Sm proteins. All Sm proteins contain a common 
sequence motif in two segments, Sm1 and Sm2, separated by 
a short variable linker. This family also includes the bacterial 
Hfq (host factor Q) proteins. Hfq are also RNA-binding 
proteins, that form hexameric rings.
Length=66

 Score = 71.4 bits (176),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 40/67 (60%), Gaps = 3/67 (4%)

Query  53   LLDLTDKKLVLVLRDGRKLIGVLRSWDQFANLVLQDTIERLYAGNLYADIPRGIFLVRGE  112
            L  L  K++++ L++GR+L G L+ +DQF NLVL D  E +  G        G+ L+RG 
Sbjct  3    LKKLLGKRVLVELKNGRELRGTLKGFDQFMNLVLDDVEETIKDGE---VRKLGLVLIRGN  59

Query  113  NVLLLGE  119
            N++L+  
Sbjct  60   NIVLISP  66



Lambda      K        H        a         alpha
   0.318    0.138    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00018183

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426258 pfam01423, LSM, LSM domain. The LSM domain contains Sm...  71.0    1e-17


>CDD:426258 pfam01423, LSM, LSM domain.  The LSM domain contains Sm proteins 
as well as other related LSM (Like Sm) proteins. The U1, 
U2, U4/U6, and U5 small nuclear ribonucleoprotein particles 
(snRNPs) involved in pre-mRNA splicing contain seven Sm proteins 
(B/B', D1, D2, D3, E, F and G) in common, which assemble 
around the Sm site present in four of the major spliceosomal 
small nuclear RNAs. The U6 snRNP binds to the LSM (Like 
Sm) proteins. Sm proteins are also found in archaebacteria, 
which do not have any splicing apparatus suggesting a more general 
role for Sm proteins. All Sm proteins contain a common 
sequence motif in two segments, Sm1 and Sm2, separated by 
a short variable linker. This family also includes the bacterial 
Hfq (host factor Q) proteins. Hfq are also RNA-binding 
proteins, that form hexameric rings.
Length=66

 Score = 71.0 bits (175),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 40/67 (60%), Gaps = 3/67 (4%)

Query  53   LLDLTDKKLVLVLRDGRKLIGVLRSWDQFANLVLQDTIERLYAGNLYADIPRGIFLVRGE  112
            L  L  K++++ L++GR+L G L+ +DQF NLVL D  E +  G        G+ L+RG 
Sbjct  3    LKKLLGKRVLVELKNGRELRGTLKGFDQFMNLVLDDVEETIKDGE---VRKLGLVLIRGN  59

Query  113  NVLLLGE  119
            N++L+  
Sbjct  60   NIVLISP  66



Lambda      K        H        a         alpha
   0.317    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0832    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00018184

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00012246

Length=1270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462386 pfam08161, NUC173, NUC173 domain. This is the central ...  326     4e-104


>CDD:462386 pfam08161, NUC173, NUC173 domain.  This is the central domain 
of of novel family of hypothetical nucleolar proteins.
Length=202

 Score = 326 bits (837),  Expect = 4e-104, Method: Composition-based stats.
 Identities = 117/203 (58%), Positives = 152/203 (75%), Gaps = 2/203 (1%)

Query  386  LAKAAKDLLSVKYQAAWAEVFKVCSAMFDSFKWRSSPFLDDIVKIIGDLRSNESFHGKKQ  445
            +AKA + LLS KYQ AW EV  V SA+F+    RS+P L  I+K +GDLR++ESF  KK+
Sbjct  1    IAKALESLLSYKYQHAWKEVLNVLSALFEKLGKRSNPLLLPILKTLGDLRTSESFEFKKE  60

Query  446  ADEVLGSAVEAMGPAAVLEILPLNII-QQKNGQPGRVWFLPILRDSVTNTNLAHFRSELV  504
            ADEV+G+A+ AMGP  VL ILPLN+     + QPGR W LP+LRD++ NT+L+ F+SE +
Sbjct  61   ADEVIGAAIRAMGPEVVLSILPLNLDGPAGDIQPGRAWLLPLLRDNIRNTSLSFFKSEFL  120

Query  505  PLSEALYQKVVDYGSAEKTVEKKIFETLVQQTWAILPGYCELPLDLVEAFDQSFAELLSN  564
            PL+EAL+QK  +   A K+VE KIFETLV Q W++LPG+C LP DL E+F +SFA+LL N
Sbjct  121  PLAEALFQKAKELEEAGKSVEAKIFETLVDQIWSLLPGFCNLPTDLKESF-KSFAKLLGN  179

Query  565  VLYKQTELRVDICNALQTLVESN  587
            +LY+Q ELR  IC AL+TLVESN
Sbjct  180  LLYEQPELRPTICQALRTLVESN  202



Lambda      K        H        a         alpha
   0.315    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1613375200


Query= TCONS_00012247

Length=1270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462386 pfam08161, NUC173, NUC173 domain. This is the central ...  326     4e-104


>CDD:462386 pfam08161, NUC173, NUC173 domain.  This is the central domain 
of of novel family of hypothetical nucleolar proteins.
Length=202

 Score = 326 bits (837),  Expect = 4e-104, Method: Composition-based stats.
 Identities = 117/203 (58%), Positives = 152/203 (75%), Gaps = 2/203 (1%)

Query  386  LAKAAKDLLSVKYQAAWAEVFKVCSAMFDSFKWRSSPFLDDIVKIIGDLRSNESFHGKKQ  445
            +AKA + LLS KYQ AW EV  V SA+F+    RS+P L  I+K +GDLR++ESF  KK+
Sbjct  1    IAKALESLLSYKYQHAWKEVLNVLSALFEKLGKRSNPLLLPILKTLGDLRTSESFEFKKE  60

Query  446  ADEVLGSAVEAMGPAAVLEILPLNII-QQKNGQPGRVWFLPILRDSVTNTNLAHFRSELV  504
            ADEV+G+A+ AMGP  VL ILPLN+     + QPGR W LP+LRD++ NT+L+ F+SE +
Sbjct  61   ADEVIGAAIRAMGPEVVLSILPLNLDGPAGDIQPGRAWLLPLLRDNIRNTSLSFFKSEFL  120

Query  505  PLSEALYQKVVDYGSAEKTVEKKIFETLVQQTWAILPGYCELPLDLVEAFDQSFAELLSN  564
            PL+EAL+QK  +   A K+VE KIFETLV Q W++LPG+C LP DL E+F +SFA+LL N
Sbjct  121  PLAEALFQKAKELEEAGKSVEAKIFETLVDQIWSLLPGFCNLPTDLKESF-KSFAKLLGN  179

Query  565  VLYKQTELRVDICNALQTLVESN  587
            +LY+Q ELR  IC AL+TLVESN
Sbjct  180  LLYEQPELRPTICQALRTLVESN  202



Lambda      K        H        a         alpha
   0.315    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1613375200


Query= TCONS_00018185

Length=1270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462386 pfam08161, NUC173, NUC173 domain. This is the central ...  326     4e-104


>CDD:462386 pfam08161, NUC173, NUC173 domain.  This is the central domain 
of of novel family of hypothetical nucleolar proteins.
Length=202

 Score = 326 bits (837),  Expect = 4e-104, Method: Composition-based stats.
 Identities = 117/203 (58%), Positives = 152/203 (75%), Gaps = 2/203 (1%)

Query  386  LAKAAKDLLSVKYQAAWAEVFKVCSAMFDSFKWRSSPFLDDIVKIIGDLRSNESFHGKKQ  445
            +AKA + LLS KYQ AW EV  V SA+F+    RS+P L  I+K +GDLR++ESF  KK+
Sbjct  1    IAKALESLLSYKYQHAWKEVLNVLSALFEKLGKRSNPLLLPILKTLGDLRTSESFEFKKE  60

Query  446  ADEVLGSAVEAMGPAAVLEILPLNII-QQKNGQPGRVWFLPILRDSVTNTNLAHFRSELV  504
            ADEV+G+A+ AMGP  VL ILPLN+     + QPGR W LP+LRD++ NT+L+ F+SE +
Sbjct  61   ADEVIGAAIRAMGPEVVLSILPLNLDGPAGDIQPGRAWLLPLLRDNIRNTSLSFFKSEFL  120

Query  505  PLSEALYQKVVDYGSAEKTVEKKIFETLVQQTWAILPGYCELPLDLVEAFDQSFAELLSN  564
            PL+EAL+QK  +   A K+VE KIFETLV Q W++LPG+C LP DL E+F +SFA+LL N
Sbjct  121  PLAEALFQKAKELEEAGKSVEAKIFETLVDQIWSLLPGFCNLPTDLKESF-KSFAKLLGN  179

Query  565  VLYKQTELRVDICNALQTLVESN  587
            +LY+Q ELR  IC AL+TLVESN
Sbjct  180  LLYEQPELRPTICQALRTLVESN  202



Lambda      K        H        a         alpha
   0.315    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1613375200


Query= TCONS_00018186

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00012248

Length=1270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462386 pfam08161, NUC173, NUC173 domain. This is the central ...  326     4e-104


>CDD:462386 pfam08161, NUC173, NUC173 domain.  This is the central domain 
of of novel family of hypothetical nucleolar proteins.
Length=202

 Score = 326 bits (837),  Expect = 4e-104, Method: Composition-based stats.
 Identities = 117/203 (58%), Positives = 152/203 (75%), Gaps = 2/203 (1%)

Query  386  LAKAAKDLLSVKYQAAWAEVFKVCSAMFDSFKWRSSPFLDDIVKIIGDLRSNESFHGKKQ  445
            +AKA + LLS KYQ AW EV  V SA+F+    RS+P L  I+K +GDLR++ESF  KK+
Sbjct  1    IAKALESLLSYKYQHAWKEVLNVLSALFEKLGKRSNPLLLPILKTLGDLRTSESFEFKKE  60

Query  446  ADEVLGSAVEAMGPAAVLEILPLNII-QQKNGQPGRVWFLPILRDSVTNTNLAHFRSELV  504
            ADEV+G+A+ AMGP  VL ILPLN+     + QPGR W LP+LRD++ NT+L+ F+SE +
Sbjct  61   ADEVIGAAIRAMGPEVVLSILPLNLDGPAGDIQPGRAWLLPLLRDNIRNTSLSFFKSEFL  120

Query  505  PLSEALYQKVVDYGSAEKTVEKKIFETLVQQTWAILPGYCELPLDLVEAFDQSFAELLSN  564
            PL+EAL+QK  +   A K+VE KIFETLV Q W++LPG+C LP DL E+F +SFA+LL N
Sbjct  121  PLAEALFQKAKELEEAGKSVEAKIFETLVDQIWSLLPGFCNLPTDLKESF-KSFAKLLGN  179

Query  565  VLYKQTELRVDICNALQTLVESN  587
            +LY+Q ELR  IC AL+TLVESN
Sbjct  180  LLYEQPELRPTICQALRTLVESN  202



Lambda      K        H        a         alpha
   0.315    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1613375200


Query= TCONS_00012249

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00018187

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.342    0.142    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00012250

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00012251

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00018188

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00012252

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00018189

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00018190

Length=555


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.128    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 691920164


Query= TCONS_00012253

Length=736


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 934207584


Query= TCONS_00018191

Length=736


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 934207584


Query= TCONS_00012254

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00018192

Length=555


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.128    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 691920164


Query= TCONS_00018193

Length=555


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.128    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 691920164


Query= TCONS_00012255

Length=555


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.128    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 691920164


Query= TCONS_00018194

Length=350


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00012256

Length=304


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0588    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00012257

Length=685


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 873075680


Query= TCONS_00012258

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00018195

Length=736


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 934207584


Query= TCONS_00018196

Length=867


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1108216808


Query= TCONS_00012259

Length=867


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1108216808


Query= TCONS_00018197

Length=736


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 934207584


Query= TCONS_00018198

Length=396


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00018199

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3              507     0.0  


>CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3.  
Length=369

 Score = 507 bits (1306),  Expect = 0.0, Method: Composition-based stats.
 Identities = 229/310 (74%), Positives = 264/310 (85%), Gaps = 2/310 (1%)

Query  1    MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDL  60
            MSHRK+EAPRHGSL FLPRKRA RHRGKVKSFPKDD  KPVHLT  +GYKAGMT +VRDL
Sbjct  1    MSHRKFEAPRHGSLGFLPRKRAGRHRGKVKSFPKDDTSKPVHLTGFLGYKAGMTHIVRDL  60

Query  61   DRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYK  120
            D+PG+K HKKE VEAVT++ETPP+V VGVVGY+ETPRGLR LTTVWA+HLS+EVKRRFYK
Sbjct  61   DKPGSKEHKKETVEAVTVVETPPMVIVGVVGYVETPRGLRPLTTVWAQHLSEEVKRRFYK  120

Query  121  NWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAH  178
            NWYKSKKKAFTKY+KK+   +G   I  +LE IKKYC+V+RV+ HTQI KTP L QKKAH
Sbjct  121  NWYKSKKKAFTKYSKKYEGADGKKLIEADLEYIKKYCSVIRVITHTQIGKTPGLFQKKAH  180

Query  179  LMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTSRWGTKK  238
            LMEIQVNGG++A+KV+FAR  FEK + + ++F + EMIDVI VTKG GFQGVT RWG KK
Sbjct  181  LMEIQVNGGTIAEKVNFAREAFEKTVAVAAVFRQGEMIDVIGVTKGKGFQGVTKRWGVKK  240

Query  239  LPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKGSDEGNASTD  298
            LPRKTH+GLRKVACIGAWHP+ V  TVARAGQMGYHHRT  N K++RIG G D  NAST+
Sbjct  241  LPRKTHRGLRKVACIGAWHPARVWPTVARAGQMGYHHRTELNKKIYRIGTGDDGKNASTE  300

Query  299  FDISKKQITP  308
            FD+++K ITP
Sbjct  301  FDLTEKTITP  310



Lambda      K        H        a         alpha
   0.318    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00018200

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3              601     0.0  


>CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3.  
Length=369

 Score = 601 bits (1550),  Expect = 0.0, Method: Composition-based stats.
 Identities = 275/369 (75%), Positives = 318/369 (86%), Gaps = 2/369 (1%)

Query  1    MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDL  60
            MSHRK+EAPRHGSL FLPRKRA RHRGKVKSFPKDD  KPVHLT  +GYKAGMT +VRDL
Sbjct  1    MSHRKFEAPRHGSLGFLPRKRAGRHRGKVKSFPKDDTSKPVHLTGFLGYKAGMTHIVRDL  60

Query  61   DRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYK  120
            D+PG+K HKKE VEAVT++ETPP+V VGVVGY+ETPRGLR LTTVWA+HLS+EVKRRFYK
Sbjct  61   DKPGSKEHKKETVEAVTVVETPPMVIVGVVGYVETPRGLRPLTTVWAQHLSEEVKRRFYK  120

Query  121  NWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAH  178
            NWYKSKKKAFTKY+KK+   +G   I  +LE IKKYC+V+RV+ HTQI KTP L QKKAH
Sbjct  121  NWYKSKKKAFTKYSKKYEGADGKKLIEADLEYIKKYCSVIRVITHTQIGKTPGLFQKKAH  180

Query  179  LMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTSRWGTKK  238
            LMEIQVNGG++A+KV+FAR  FEK + + ++F + EMIDVI VTKG GFQGVT RWG KK
Sbjct  181  LMEIQVNGGTIAEKVNFAREAFEKTVAVAAVFRQGEMIDVIGVTKGKGFQGVTKRWGVKK  240

Query  239  LPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKGSDEGNASTD  298
            LPRKTH+GLRKVACIGAWHP+ V  TVARAGQMGYHHRT  N K++RIG G D  NAST+
Sbjct  241  LPRKTHRGLRKVACIGAWHPARVWPTVARAGQMGYHHRTELNKKIYRIGTGDDGKNASTE  300

Query  299  FDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRRATEKVELK  358
            FD+++K ITPMGGFV YGEVK+D+IMVKGSVPG KKR++TLRK+L PQTSRRA E+V LK
Sbjct  301  FDLTEKTITPMGGFVHYGEVKHDFIMVKGSVPGPKKRLVTLRKSLLPQTSRRALEEVPLK  360

Query  359  WIDTSSKFG  367
            +IDT+SKFG
Sbjct  361  FIDTASKFG  369



Lambda      K        H        a         alpha
   0.318    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00012260

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3              601     0.0  


>CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3.  
Length=369

 Score = 601 bits (1550),  Expect = 0.0, Method: Composition-based stats.
 Identities = 275/369 (75%), Positives = 318/369 (86%), Gaps = 2/369 (1%)

Query  1    MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDL  60
            MSHRK+EAPRHGSL FLPRKRA RHRGKVKSFPKDD  KPVHLT  +GYKAGMT +VRDL
Sbjct  1    MSHRKFEAPRHGSLGFLPRKRAGRHRGKVKSFPKDDTSKPVHLTGFLGYKAGMTHIVRDL  60

Query  61   DRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYK  120
            D+PG+K HKKE VEAVT++ETPP+V VGVVGY+ETPRGLR LTTVWA+HLS+EVKRRFYK
Sbjct  61   DKPGSKEHKKETVEAVTVVETPPMVIVGVVGYVETPRGLRPLTTVWAQHLSEEVKRRFYK  120

Query  121  NWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAH  178
            NWYKSKKKAFTKY+KK+   +G   I  +LE IKKYC+V+RV+ HTQI KTP L QKKAH
Sbjct  121  NWYKSKKKAFTKYSKKYEGADGKKLIEADLEYIKKYCSVIRVITHTQIGKTPGLFQKKAH  180

Query  179  LMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTSRWGTKK  238
            LMEIQVNGG++A+KV+FAR  FEK + + ++F + EMIDVI VTKG GFQGVT RWG KK
Sbjct  181  LMEIQVNGGTIAEKVNFAREAFEKTVAVAAVFRQGEMIDVIGVTKGKGFQGVTKRWGVKK  240

Query  239  LPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKGSDEGNASTD  298
            LPRKTH+GLRKVACIGAWHP+ V  TVARAGQMGYHHRT  N K++RIG G D  NAST+
Sbjct  241  LPRKTHRGLRKVACIGAWHPARVWPTVARAGQMGYHHRTELNKKIYRIGTGDDGKNASTE  300

Query  299  FDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRRATEKVELK  358
            FD+++K ITPMGGFV YGEVK+D+IMVKGSVPG KKR++TLRK+L PQTSRRA E+V LK
Sbjct  301  FDLTEKTITPMGGFVHYGEVKHDFIMVKGSVPGPKKRLVTLRKSLLPQTSRRALEEVPLK  360

Query  359  WIDTSSKFG  367
            +IDT+SKFG
Sbjct  361  FIDTASKFG  369



Lambda      K        H        a         alpha
   0.318    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00012261

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3              507     0.0  


>CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3.  
Length=369

 Score = 507 bits (1306),  Expect = 0.0, Method: Composition-based stats.
 Identities = 229/310 (74%), Positives = 264/310 (85%), Gaps = 2/310 (1%)

Query  1    MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDL  60
            MSHRK+EAPRHGSL FLPRKRA RHRGKVKSFPKDD  KPVHLT  +GYKAGMT +VRDL
Sbjct  1    MSHRKFEAPRHGSLGFLPRKRAGRHRGKVKSFPKDDTSKPVHLTGFLGYKAGMTHIVRDL  60

Query  61   DRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYK  120
            D+PG+K HKKE VEAVT++ETPP+V VGVVGY+ETPRGLR LTTVWA+HLS+EVKRRFYK
Sbjct  61   DKPGSKEHKKETVEAVTVVETPPMVIVGVVGYVETPRGLRPLTTVWAQHLSEEVKRRFYK  120

Query  121  NWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAH  178
            NWYKSKKKAFTKY+KK+   +G   I  +LE IKKYC+V+RV+ HTQI KTP L QKKAH
Sbjct  121  NWYKSKKKAFTKYSKKYEGADGKKLIEADLEYIKKYCSVIRVITHTQIGKTPGLFQKKAH  180

Query  179  LMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTSRWGTKK  238
            LMEIQVNGG++A+KV+FAR  FEK + + ++F + EMIDVI VTKG GFQGVT RWG KK
Sbjct  181  LMEIQVNGGTIAEKVNFAREAFEKTVAVAAVFRQGEMIDVIGVTKGKGFQGVTKRWGVKK  240

Query  239  LPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKGSDEGNASTD  298
            LPRKTH+GLRKVACIGAWHP+ V  TVARAGQMGYHHRT  N K++RIG G D  NAST+
Sbjct  241  LPRKTHRGLRKVACIGAWHPARVWPTVARAGQMGYHHRTELNKKIYRIGTGDDGKNASTE  300

Query  299  FDISKKQITP  308
            FD+++K ITP
Sbjct  301  FDLTEKTITP  310



Lambda      K        H        a         alpha
   0.318    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00018201

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3              504     0.0  


>CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3.  
Length=369

 Score = 504 bits (1299),  Expect = 0.0, Method: Composition-based stats.
 Identities = 228/310 (74%), Positives = 263/310 (85%), Gaps = 2/310 (1%)

Query  1    MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDL  60
            MSHRK+EAPRHGSL FLPRKRA RHRGKVKSFPKDD  KPVHLT  +GYKAGMT +VRDL
Sbjct  1    MSHRKFEAPRHGSLGFLPRKRAGRHRGKVKSFPKDDTSKPVHLTGFLGYKAGMTHIVRDL  60

Query  61   DRPGAKMHKKEIVEAVTIIETPPVCSVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYK  120
            D+PG+K HKKE VEAVT++ETPP+  VGVVGY+ETPRGLR LTTVWA+HLS+EVKRRFYK
Sbjct  61   DKPGSKEHKKETVEAVTVVETPPMVIVGVVGYVETPRGLRPLTTVWAQHLSEEVKRRFYK  120

Query  121  NWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAH  178
            NWYKSKKKAFTKY+KK+   +G   I  +LE IKKYC+V+RV+ HTQI KTP L QKKAH
Sbjct  121  NWYKSKKKAFTKYSKKYEGADGKKLIEADLEYIKKYCSVIRVITHTQIGKTPGLFQKKAH  180

Query  179  LMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTSRWGTKK  238
            LMEIQVNGG++A+KV+FAR  FEK + + ++F + EMIDVI VTKG GFQGVT RWG KK
Sbjct  181  LMEIQVNGGTIAEKVNFAREAFEKTVAVAAVFRQGEMIDVIGVTKGKGFQGVTKRWGVKK  240

Query  239  LPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKGSDEGNASTD  298
            LPRKTH+GLRKVACIGAWHP+ V  TVARAGQMGYHHRT  N K++RIG G D  NAST+
Sbjct  241  LPRKTHRGLRKVACIGAWHPARVWPTVARAGQMGYHHRTELNKKIYRIGTGDDGKNASTE  300

Query  299  FDISKKQITP  308
            FD+++K ITP
Sbjct  301  FDLTEKTITP  310



Lambda      K        H        a         alpha
   0.318    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00018202

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3              526     0.0  


>CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3.  
Length=369

 Score = 526 bits (1356),  Expect = 0.0, Method: Composition-based stats.
 Identities = 236/323 (73%), Positives = 278/323 (86%), Gaps = 2/323 (1%)

Query  1    MGYKAGMTTVVRDLDRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVW  60
            +GYKAGMT +VRDLD+PG+K HKKE VEAVT++ETPP+V VGVVGY+ETPRGLR LTTVW
Sbjct  47   LGYKAGMTHIVRDLDKPGSKEHKKETVEAVTVVETPPMVIVGVVGYVETPRGLRPLTTVW  106

Query  61   AEHLSDEVKRRFYKNWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHT  119
            A+HLS+EVKRRFYKNWYKSKKKAFTKY+KK+   +G   I  +LE IKKYC+V+RV+ HT
Sbjct  107  AQHLSEEVKRRFYKNWYKSKKKAFTKYSKKYEGADGKKLIEADLEYIKKYCSVIRVITHT  166

Query  120  QIRKTP-LKQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKG  178
            QI KTP L QKKAHLMEIQVNGG++A+KV+FAR  FEK + + ++F + EMIDVI VTKG
Sbjct  167  QIGKTPGLFQKKAHLMEIQVNGGTIAEKVNFAREAFEKTVAVAAVFRQGEMIDVIGVTKG  226

Query  179  HGFQGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVF  238
             GFQGVT RWG KKLPRKTH+GLRKVACIGAWHP+ V  TVARAGQMGYHHRT  N K++
Sbjct  227  KGFQGVTKRWGVKKLPRKTHRGLRKVACIGAWHPARVWPTVARAGQMGYHHRTELNKKIY  286

Query  239  RIGKGSDEGNASTDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLY  298
            RIG G D  NAST+FD+++K ITPMGGFV YGEVK+D+IMVKGSVPG KKR++TLRK+L 
Sbjct  287  RIGTGDDGKNASTEFDLTEKTITPMGGFVHYGEVKHDFIMVKGSVPGPKKRLVTLRKSLL  346

Query  299  PQTSRRATEKVELKWIDTSSKFG  321
            PQTSRRA E+V LK+IDT+SKFG
Sbjct  347  PQTSRRALEEVPLKFIDTASKFG  369



Lambda      K        H        a         alpha
   0.318    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00018203

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3              601     0.0  


>CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3.  
Length=369

 Score = 601 bits (1550),  Expect = 0.0, Method: Composition-based stats.
 Identities = 275/369 (75%), Positives = 318/369 (86%), Gaps = 2/369 (1%)

Query  1    MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDL  60
            MSHRK+EAPRHGSL FLPRKRA RHRGKVKSFPKDD  KPVHLT  +GYKAGMT +VRDL
Sbjct  1    MSHRKFEAPRHGSLGFLPRKRAGRHRGKVKSFPKDDTSKPVHLTGFLGYKAGMTHIVRDL  60

Query  61   DRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYK  120
            D+PG+K HKKE VEAVT++ETPP+V VGVVGY+ETPRGLR LTTVWA+HLS+EVKRRFYK
Sbjct  61   DKPGSKEHKKETVEAVTVVETPPMVIVGVVGYVETPRGLRPLTTVWAQHLSEEVKRRFYK  120

Query  121  NWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAH  178
            NWYKSKKKAFTKY+KK+   +G   I  +LE IKKYC+V+RV+ HTQI KTP L QKKAH
Sbjct  121  NWYKSKKKAFTKYSKKYEGADGKKLIEADLEYIKKYCSVIRVITHTQIGKTPGLFQKKAH  180

Query  179  LMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTSRWGTKK  238
            LMEIQVNGG++A+KV+FAR  FEK + + ++F + EMIDVI VTKG GFQGVT RWG KK
Sbjct  181  LMEIQVNGGTIAEKVNFAREAFEKTVAVAAVFRQGEMIDVIGVTKGKGFQGVTKRWGVKK  240

Query  239  LPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKGSDEGNASTD  298
            LPRKTH+GLRKVACIGAWHP+ V  TVARAGQMGYHHRT  N K++RIG G D  NAST+
Sbjct  241  LPRKTHRGLRKVACIGAWHPARVWPTVARAGQMGYHHRTELNKKIYRIGTGDDGKNASTE  300

Query  299  FDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRRATEKVELK  358
            FD+++K ITPMGGFV YGEVK+D+IMVKGSVPG KKR++TLRK+L PQTSRRA E+V LK
Sbjct  301  FDLTEKTITPMGGFVHYGEVKHDFIMVKGSVPGPKKRLVTLRKSLLPQTSRRALEEVPLK  360

Query  359  WIDTSSKFG  367
            +IDT+SKFG
Sbjct  361  FIDTASKFG  369



Lambda      K        H        a         alpha
   0.318    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00012262

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3              526     0.0  


>CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3.  
Length=369

 Score = 526 bits (1356),  Expect = 0.0, Method: Composition-based stats.
 Identities = 236/323 (73%), Positives = 278/323 (86%), Gaps = 2/323 (1%)

Query  1    MGYKAGMTTVVRDLDRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVW  60
            +GYKAGMT +VRDLD+PG+K HKKE VEAVT++ETPP+V VGVVGY+ETPRGLR LTTVW
Sbjct  47   LGYKAGMTHIVRDLDKPGSKEHKKETVEAVTVVETPPMVIVGVVGYVETPRGLRPLTTVW  106

Query  61   AEHLSDEVKRRFYKNWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHT  119
            A+HLS+EVKRRFYKNWYKSKKKAFTKY+KK+   +G   I  +LE IKKYC+V+RV+ HT
Sbjct  107  AQHLSEEVKRRFYKNWYKSKKKAFTKYSKKYEGADGKKLIEADLEYIKKYCSVIRVITHT  166

Query  120  QIRKTP-LKQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKG  178
            QI KTP L QKKAHLMEIQVNGG++A+KV+FAR  FEK + + ++F + EMIDVI VTKG
Sbjct  167  QIGKTPGLFQKKAHLMEIQVNGGTIAEKVNFAREAFEKTVAVAAVFRQGEMIDVIGVTKG  226

Query  179  HGFQGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVF  238
             GFQGVT RWG KKLPRKTH+GLRKVACIGAWHP+ V  TVARAGQMGYHHRT  N K++
Sbjct  227  KGFQGVTKRWGVKKLPRKTHRGLRKVACIGAWHPARVWPTVARAGQMGYHHRTELNKKIY  286

Query  239  RIGKGSDEGNASTDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLY  298
            RIG G D  NAST+FD+++K ITPMGGFV YGEVK+D+IMVKGSVPG KKR++TLRK+L 
Sbjct  287  RIGTGDDGKNASTEFDLTEKTITPMGGFVHYGEVKHDFIMVKGSVPGPKKRLVTLRKSLL  346

Query  299  PQTSRRATEKVELKWIDTSSKFG  321
            PQTSRRA E+V LK+IDT+SKFG
Sbjct  347  PQTSRRALEEVPLKFIDTASKFG  369



Lambda      K        H        a         alpha
   0.318    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00018204

Length=268


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00012263

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00012264

Length=268


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00012265

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.120    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00012266

Length=268


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00018205

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.142    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00012267

Length=63
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated prot...  74.6    2e-18


>CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated protein (SKN1). 
 This family consists of the beta-glucan synthesis-associated 
proteins KRE6 and SKN1. Beta1,6-Glucan is a key component 
of the yeast cell wall, interconnecting cell wall proteins, 
beta1,3-glucan, and chitin. It has been postulated that 
the synthesis of beta1,6-glucan begins in the endoplasmic reticulum 
with the formation of protein-bound primer structures 
and that these primer structures are extended in the Golgi 
complex by two putative glucosyltransferases that are functionally 
redundant, Kre6 and Skn1. This is followed by maturation 
steps at the cell surface and by coupling to other cell 
wall macromolecules.
Length=500

 Score = 74.6 bits (184),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 26/57 (46%), Positives = 30/57 (53%), Gaps = 0/57 (0%)

Query  1    MRDKSGPKCNPSDPLCLEVGERPLLSNIRRGLIDPDTPDSAKTKKAADGKEWILVVS  57
                       +    L   + PLLS IR GLIDPDTP SA T+K+ DGK W LV S
Sbjct  66   TGVTEHGSTKGNLGEILTTYQYPLLSAIRTGLIDPDTPQSAYTRKSQDGKTWKLVFS  122



Lambda      K        H        a         alpha
   0.317    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00012268

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated prot...  588     0.0  


>CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated protein (SKN1). 
 This family consists of the beta-glucan synthesis-associated 
proteins KRE6 and SKN1. Beta1,6-Glucan is a key component 
of the yeast cell wall, interconnecting cell wall proteins, 
beta1,3-glucan, and chitin. It has been postulated that 
the synthesis of beta1,6-glucan begins in the endoplasmic reticulum 
with the formation of protein-bound primer structures 
and that these primer structures are extended in the Golgi 
complex by two putative glucosyltransferases that are functionally 
redundant, Kre6 and Skn1. This is followed by maturation 
steps at the cell surface and by coupling to other cell 
wall macromolecules.
Length=500

 Score = 588 bits (1517),  Expect = 0.0, Method: Composition-based stats.
 Identities = 208/331 (63%), Positives = 233/331 (70%), Gaps = 15/331 (5%)

Query  156  LLLFPEPEEKDDYLHNPDP------NDKEGQCDLWSRRGIMNVTGLVLLTLGFLALFIGY  209
              L  + +E DDYLHNPDP              +  RRG+ NV GL+ L LG L LFIGY
Sbjct  1    FPLSIDEKEPDDYLHNPDPDANYDKKRFGYDLKIMDRRGLGNVGGLLFLILGLLMLFIGY  60

Query  210  PVITAVKGMRDKSGPKCNPSDPLCLEVGERPLLSNIRRGLIDPDTPDSAKTKKAADGKEW  269
            PV+T               +    L   + PLLS IR GLIDPDTP SA T+K+ DGK W
Sbjct  61   PVLTY---TGVTEHGSTKGNLGEILTTYQYPLLSAIRTGLIDPDTPQSAYTRKSQDGKTW  117

Query  270  ILVFSDEFNTEGRTFYEGDDPFYQAVDLWYGVTQDLEWYDPDAVTTRNGVLEIRFDSFPN  329
             LVFSDEFN +GRTFY+GDDPF+ AVDL Y  TQDLEWYDPDAVTT NG L IR D+F N
Sbjct  118  KLVFSDEFNKDGRTFYDGDDPFWTAVDLHYWATQDLEWYDPDAVTTANGTLVIRMDAFKN  177

Query  330  HELKYRSGMVQSWNKLCFSGGRLEASISLPGAGDVSGFWPGFWAMGNLARPGYAATTEGM  389
            H+L YRSGM+QSWNKLCF+GG +E S SLPG GDVSG WPG W MGNL RPGY ATTEG+
Sbjct  178  HDLNYRSGMLQSWNKLCFTGGYIEVSASLPGYGDVSGLWPGLWTMGNLGRPGYLATTEGV  237

Query  390  WPYSYHDKCDAGITPNQSSTDGISYLPGMRLPACTCAGEDHPSPGKSRSAPEIDVIEASV  449
            WPYSY D CDAGITPNQSS DGISYLPG RLP+CTC+GEDHP+PG  R APEID++EA V
Sbjct  238  WPYSY-DSCDAGITPNQSSPDGISYLPGQRLPSCTCSGEDHPNPGVGRGAPEIDILEAEV  296

Query  450  TALNNNPNAVIGSVSQSLQMAPFDIWYMPDY  480
                      IG  SQSLQ+APFDIWYMPDY
Sbjct  297  DTDLG-----IGVASQSLQIAPFDIWYMPDY  322



Lambda      K        H        a         alpha
   0.314    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00018206

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated prot...  588     0.0  


>CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated protein (SKN1). 
 This family consists of the beta-glucan synthesis-associated 
proteins KRE6 and SKN1. Beta1,6-Glucan is a key component 
of the yeast cell wall, interconnecting cell wall proteins, 
beta1,3-glucan, and chitin. It has been postulated that 
the synthesis of beta1,6-glucan begins in the endoplasmic reticulum 
with the formation of protein-bound primer structures 
and that these primer structures are extended in the Golgi 
complex by two putative glucosyltransferases that are functionally 
redundant, Kre6 and Skn1. This is followed by maturation 
steps at the cell surface and by coupling to other cell 
wall macromolecules.
Length=500

 Score = 588 bits (1517),  Expect = 0.0, Method: Composition-based stats.
 Identities = 208/331 (63%), Positives = 233/331 (70%), Gaps = 15/331 (5%)

Query  156  LLLFPEPEEKDDYLHNPDP------NDKEGQCDLWSRRGIMNVTGLVLLTLGFLALFIGY  209
              L  + +E DDYLHNPDP              +  RRG+ NV GL+ L LG L LFIGY
Sbjct  1    FPLSIDEKEPDDYLHNPDPDANYDKKRFGYDLKIMDRRGLGNVGGLLFLILGLLMLFIGY  60

Query  210  PVITAVKGMRDKSGPKCNPSDPLCLEVGERPLLSNIRRGLIDPDTPDSAKTKKAADGKEW  269
            PV+T               +    L   + PLLS IR GLIDPDTP SA T+K+ DGK W
Sbjct  61   PVLTY---TGVTEHGSTKGNLGEILTTYQYPLLSAIRTGLIDPDTPQSAYTRKSQDGKTW  117

Query  270  ILVFSDEFNTEGRTFYEGDDPFYQAVDLWYGVTQDLEWYDPDAVTTRNGVLEIRFDSFPN  329
             LVFSDEFN +GRTFY+GDDPF+ AVDL Y  TQDLEWYDPDAVTT NG L IR D+F N
Sbjct  118  KLVFSDEFNKDGRTFYDGDDPFWTAVDLHYWATQDLEWYDPDAVTTANGTLVIRMDAFKN  177

Query  330  HELKYRSGMVQSWNKLCFSGGRLEASISLPGAGDVSGFWPGFWAMGNLARPGYAATTEGM  389
            H+L YRSGM+QSWNKLCF+GG +E S SLPG GDVSG WPG W MGNL RPGY ATTEG+
Sbjct  178  HDLNYRSGMLQSWNKLCFTGGYIEVSASLPGYGDVSGLWPGLWTMGNLGRPGYLATTEGV  237

Query  390  WPYSYHDKCDAGITPNQSSTDGISYLPGMRLPACTCAGEDHPSPGKSRSAPEIDVIEASV  449
            WPYSY D CDAGITPNQSS DGISYLPG RLP+CTC+GEDHP+PG  R APEID++EA V
Sbjct  238  WPYSY-DSCDAGITPNQSSPDGISYLPGQRLPSCTCSGEDHPNPGVGRGAPEIDILEAEV  296

Query  450  TALNNNPNAVIGSVSQSLQMAPFDIWYMPDY  480
                      IG  SQSLQ+APFDIWYMPDY
Sbjct  297  DTDLG-----IGVASQSLQIAPFDIWYMPDY  322



Lambda      K        H        a         alpha
   0.314    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00018207

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated prot...  697     0.0  


>CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated protein (SKN1). 
 This family consists of the beta-glucan synthesis-associated 
proteins KRE6 and SKN1. Beta1,6-Glucan is a key component 
of the yeast cell wall, interconnecting cell wall proteins, 
beta1,3-glucan, and chitin. It has been postulated that 
the synthesis of beta1,6-glucan begins in the endoplasmic reticulum 
with the formation of protein-bound primer structures 
and that these primer structures are extended in the Golgi 
complex by two putative glucosyltransferases that are functionally 
redundant, Kre6 and Skn1. This is followed by maturation 
steps at the cell surface and by coupling to other cell 
wall macromolecules.
Length=500

 Score = 697 bits (1800),  Expect = 0.0, Method: Composition-based stats.
 Identities = 242/371 (65%), Positives = 284/371 (77%), Gaps = 10/371 (3%)

Query  4    FSDEFNTEGRTFYEGDDPFYQAVDLWYGVTQDLEWYDPDAVTTRNGVLEIRFDSFPNHEL  63
            FSDEFN +GRTFY+GDDPF+ AVDL Y  TQDLEWYDPDAVTT NG L IR D+F NH+L
Sbjct  121  FSDEFNKDGRTFYDGDDPFWTAVDLHYWATQDLEWYDPDAVTTANGTLVIRMDAFKNHDL  180

Query  64   KYRSGMVQSWNKLCFSGGRLEASISLPGAGDVSGFWPGFWAMGNLARPGYAATTEGMWPY  123
             YRSGM+QSWNKLCF+GG +E S SLPG GDVSG WPG W MGNL RPGY ATTEG+WPY
Sbjct  181  NYRSGMLQSWNKLCFTGGYIEVSASLPGYGDVSGLWPGLWTMGNLGRPGYLATTEGVWPY  240

Query  124  SYHDKCDAGITPNQSSTDGISYLPGMRLPACTCAGEDHPSPGKSRSAPEIDVIEASVTAL  183
            SY D CDAGITPNQSS DGISYLPG RLP+CTC+GEDHP+PG  R APEID++EA V   
Sbjct  241  SY-DSCDAGITPNQSSPDGISYLPGQRLPSCTCSGEDHPNPGVGRGAPEIDILEAEVDTD  299

Query  184  NNNPNAVIGSVSQSLQMAPFDIWYMPDYEFTAVYDSHITQINSYRGGPYQQAMSGLTNLN  243
                   IG  SQSLQ+APFDIWYMPDY+F  +Y++ +T +NSY GGP+QQA+SGLT LN
Sbjct  300  LG-----IGVASQSLQIAPFDIWYMPDYDFVEIYNTSVTTMNSYTGGPFQQAVSGLTTLN  354

Query  244  NKWYN-GTEYQVYAFEYTPG--AQGEITWFVGADKTWTLDARAIGPNGNIGQRMIPLEPM  300
            N WY  G ++Q Y FEY P     G ITWFVG + TWT+ ARA+GPNGNIGQR+I  EPM
Sbjct  355  NTWYEGGGQFQTYGFEYLPNDDDDGYITWFVGDEPTWTMYARALGPNGNIGQRLISEEPM  414

Query  301  AVVMNLGMAYNFAAINDTIKDYMPGIMRFDYIRIYQDPHNVSVTCDPPGYETTEYISKHP  360
            +++MNLG++ N+A I+       P  MR DY+RIYQ    ++V CDPP Y TT+YI KHP
Sbjct  415  SIIMNLGISNNWAYIDWR-SLQFPATMRIDYVRIYQPEDQINVGCDPPDYPTTDYIEKHP  473

Query  361  KAYRNANATTW  371
             AY+N N T+W
Sbjct  474  NAYQNPNLTSW  484



Lambda      K        H        a         alpha
   0.318    0.135    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00018208

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0697    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00012269

Length=660
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated prot...  878     0.0  


>CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated protein (SKN1). 
 This family consists of the beta-glucan synthesis-associated 
proteins KRE6 and SKN1. Beta1,6-Glucan is a key component 
of the yeast cell wall, interconnecting cell wall proteins, 
beta1,3-glucan, and chitin. It has been postulated that 
the synthesis of beta1,6-glucan begins in the endoplasmic reticulum 
with the formation of protein-bound primer structures 
and that these primer structures are extended in the Golgi 
complex by two putative glucosyltransferases that are functionally 
redundant, Kre6 and Skn1. This is followed by maturation 
steps at the cell surface and by coupling to other cell 
wall macromolecules.
Length=500

 Score = 878 bits (2271),  Expect = 0.0, Method: Composition-based stats.
 Identities = 308/510 (60%), Positives = 361/510 (71%), Gaps = 19/510 (4%)

Query  156  LLLFPEPEEKDDYLHNPDP------NDKEGQCDLWSRRGIMNVTGLVLLTLGFLALFIGY  209
              L  + +E DDYLHNPDP              +  RRG+ NV GL+ L LG L LFIGY
Sbjct  1    FPLSIDEKEPDDYLHNPDPDANYDKKRFGYDLKIMDRRGLGNVGGLLFLILGLLMLFIGY  60

Query  210  PVITAVKGMRDKSGPKCNPSDPLCLEVGERPLLSNIRRGLIDPDTPDSAKTKKAADGKEW  269
            PV+T               +    L   + PLLS IR GLIDPDTP SA T+K+ DGK W
Sbjct  61   PVLTY---TGVTEHGSTKGNLGEILTTYQYPLLSAIRTGLIDPDTPQSAYTRKSQDGKTW  117

Query  270  ILVFSDEFNTEGRTFYEGDDPFYQAVDLWYGVTQDLEWYDPDAVTTRNGVLEIRFDSFPN  329
             LVFSDEFN +GRTFY+GDDPF+ AVDL Y  TQDLEWYDPDAVTT NG L IR D+F N
Sbjct  118  KLVFSDEFNKDGRTFYDGDDPFWTAVDLHYWATQDLEWYDPDAVTTANGTLVIRMDAFKN  177

Query  330  HELKYRSGMVQSWNKLCFSGGRLEASISLPGAGDVSGFWPGFWAMGNLARPGYAATTEGM  389
            H+L YRSGM+QSWNKLCF+GG +E S SLPG GDVSG WPG W MGNL RPGY ATTEG+
Sbjct  178  HDLNYRSGMLQSWNKLCFTGGYIEVSASLPGYGDVSGLWPGLWTMGNLGRPGYLATTEGV  237

Query  390  WPYSYHDKCDAGITPNQSSTDGISYLPGMRLPACTCAGEDHPSPGKSRSAPEIDVIEASV  449
            WPYSY D CDAGITPNQSS DGISYLPG RLP+CTC+GEDHP+PG  R APEID++EA V
Sbjct  238  WPYSY-DSCDAGITPNQSSPDGISYLPGQRLPSCTCSGEDHPNPGVGRGAPEIDILEAEV  296

Query  450  TALNNNPNAVIGSVSQSLQMAPFDIWYMPDYEFTAVYDSHITQINSYRGGPYQQAMSGLT  509
                      IG  SQSLQ+APFDIWYMPDY+F  +Y++ +T +NSY GGP+QQA+SGLT
Sbjct  297  DTDLG-----IGVASQSLQIAPFDIWYMPDYDFVEIYNTSVTTMNSYTGGPFQQAVSGLT  351

Query  510  NLNNKWYN-GTEYQVYAFEYTPG--AQGEITWFVGADKTWTLDARAIGPNGNIGQRMIPL  566
             LNN WY  G ++Q Y FEY P     G ITWFVG + TWT+ ARA+GPNGNIGQR+I  
Sbjct  352  TLNNTWYEGGGQFQTYGFEYLPNDDDDGYITWFVGDEPTWTMYARALGPNGNIGQRLISE  411

Query  567  EPMAVVMNLGMAYNFAAINDTIKDYMPGIMRFDYIRIYQDPHNVSVTCDPPGYETTEYIS  626
            EPM+++MNLG++ N+A I+       P  MR DY+RIYQ    ++V CDPP Y TT+YI 
Sbjct  412  EPMSIIMNLGISNNWAYIDWR-SLQFPATMRIDYVRIYQPEDQINVGCDPPDYPTTDYIE  470

Query  627  KHPKAYRNANATTWSDAGYKWPKNSFIHGC  656
            KHP AY+N N T+W DAGY +PKNS  HGC
Sbjct  471  KHPNAYQNPNLTSWEDAGYTFPKNSLTHGC  500



Lambda      K        H        a         alpha
   0.315    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 836205930


Query= TCONS_00012270

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated prot...  797     0.0  


>CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated protein (SKN1). 
 This family consists of the beta-glucan synthesis-associated 
proteins KRE6 and SKN1. Beta1,6-Glucan is a key component 
of the yeast cell wall, interconnecting cell wall proteins, 
beta1,3-glucan, and chitin. It has been postulated that 
the synthesis of beta1,6-glucan begins in the endoplasmic reticulum 
with the formation of protein-bound primer structures 
and that these primer structures are extended in the Golgi 
complex by two putative glucosyltransferases that are functionally 
redundant, Kre6 and Skn1. This is followed by maturation 
steps at the cell surface and by coupling to other cell 
wall macromolecules.
Length=500

 Score = 797 bits (2060),  Expect = 0.0, Method: Composition-based stats.
 Identities = 278/442 (63%), Positives = 325/442 (74%), Gaps = 10/442 (2%)

Query  1    MRDKSGPKCNPSDPLCLEVGERPLLSNIRRGLIDPDTPDSAKTKKAADGKEWILVFSDEF  60
                       +    L   + PLLS IR GLIDPDTP SA T+K+ DGK W LVFSDEF
Sbjct  66   TGVTEHGSTKGNLGEILTTYQYPLLSAIRTGLIDPDTPQSAYTRKSQDGKTWKLVFSDEF  125

Query  61   NTEGRTFYEGDDPFYQAVDLWYGVTQDLEWYDPDAVTTRNGVLEIRFDSFPNHELKYRSG  120
            N +GRTFY+GDDPF+ AVDL Y  TQDLEWYDPDAVTT NG L IR D+F NH+L YRSG
Sbjct  126  NKDGRTFYDGDDPFWTAVDLHYWATQDLEWYDPDAVTTANGTLVIRMDAFKNHDLNYRSG  185

Query  121  MVQSWNKLCFSGGRLEASISLPGAGDVSGFWPGFWAMGNLARPGYAATTEGMWPYSYHDK  180
            M+QSWNKLCF+GG +E S SLPG GDVSG WPG W MGNL RPGY ATTEG+WPYSY D 
Sbjct  186  MLQSWNKLCFTGGYIEVSASLPGYGDVSGLWPGLWTMGNLGRPGYLATTEGVWPYSY-DS  244

Query  181  CDAGITPNQSSTDGISYLPGMRLPACTCAGEDHPSPGKSRSAPEIDVIEASVTALNNNPN  240
            CDAGITPNQSS DGISYLPG RLP+CTC+GEDHP+PG  R APEID++EA V        
Sbjct  245  CDAGITPNQSSPDGISYLPGQRLPSCTCSGEDHPNPGVGRGAPEIDILEAEVDTDLG---  301

Query  241  AVIGSVSQSLQMAPFDIWYMPDYEFTAVYDSHITQINSYRGGPYQQAMSGLTNLNNKWYN  300
              IG  SQSLQ+APFDIWYMPDY+F  +Y++ +T +NSY GGP+QQA+SGLT LNN WY 
Sbjct  302  --IGVASQSLQIAPFDIWYMPDYDFVEIYNTSVTTMNSYTGGPFQQAVSGLTTLNNTWYE  359

Query  301  -GTEYQVYAFEYTPG--AQGEITWFVGADKTWTLDARAIGPNGNIGQRMIPLEPMAVVMN  357
             G ++Q Y FEY P     G ITWFVG + TWT+ ARA+GPNGNIGQR+I  EPM+++MN
Sbjct  360  GGGQFQTYGFEYLPNDDDDGYITWFVGDEPTWTMYARALGPNGNIGQRLISEEPMSIIMN  419

Query  358  LGMAYNFAAINDTIKDYMPGIMRFDYIRIYQDPHNVSVTCDPPGYETTEYISKHPKAYRN  417
            LG++ N+A I+       P  MR DY+RIYQ    ++V CDPP Y TT+YI KHP AY+N
Sbjct  420  LGISNNWAYIDWR-SLQFPATMRIDYVRIYQPEDQINVGCDPPDYPTTDYIEKHPNAYQN  478

Query  418  ANATTWSDAGYKWPKNSFIHGC  439
             N T+W DAGY +PKNS  HGC
Sbjct  479  PNLTSWEDAGYTFPKNSLTHGC  500



Lambda      K        H        a         alpha
   0.317    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00018209

Length=217
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated prot...  438     2e-155


>CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated protein (SKN1). 
 This family consists of the beta-glucan synthesis-associated 
proteins KRE6 and SKN1. Beta1,6-Glucan is a key component 
of the yeast cell wall, interconnecting cell wall proteins, 
beta1,3-glucan, and chitin. It has been postulated that 
the synthesis of beta1,6-glucan begins in the endoplasmic reticulum 
with the formation of protein-bound primer structures 
and that these primer structures are extended in the Golgi 
complex by two putative glucosyltransferases that are functionally 
redundant, Kre6 and Skn1. This is followed by maturation 
steps at the cell surface and by coupling to other cell 
wall macromolecules.
Length=500

 Score = 438 bits (1129),  Expect = 2e-155, Method: Composition-based stats.
 Identities = 153/208 (74%), Positives = 168/208 (81%), Gaps = 6/208 (3%)

Query  4    FSDEFNTEGRTFYEGDDPFYQAVDLWYGVTQDLEWYDPDAVTTRNGVLEIRFDSFPNHEL  63
            FSDEFN +GRTFY+GDDPF+ AVDL Y  TQDLEWYDPDAVTT NG L IR D+F NH+L
Sbjct  121  FSDEFNKDGRTFYDGDDPFWTAVDLHYWATQDLEWYDPDAVTTANGTLVIRMDAFKNHDL  180

Query  64   KYRSGMVQSWNKLCFSGGRLEASISLPGAGDVSGFWPGFWAMGNLARPGYAATTEGMWPY  123
             YRSGM+QSWNKLCF+GG +E S SLPG GDVSG WPG W MGNL RPGY ATTEG+WPY
Sbjct  181  NYRSGMLQSWNKLCFTGGYIEVSASLPGYGDVSGLWPGLWTMGNLGRPGYLATTEGVWPY  240

Query  124  SYHDKCDAGITPNQSSTDGISYLPGMRLPACTCAGEDHPSPGKSRSAPEIDVIEASVTAL  183
            SY D CDAGITPNQSS DGISYLPG RLP+CTC+GEDHP+PG  R APEID++EA V   
Sbjct  241  SY-DSCDAGITPNQSSPDGISYLPGQRLPSCTCSGEDHPNPGVGRGAPEIDILEAEVDTD  299

Query  184  NNNPNAVIGSVSQSLQMAPFDIWYMPDY  211
                   IG  SQSLQ+APFDIWYMPDY
Sbjct  300  LG-----IGVASQSLQIAPFDIWYMPDY  322



Lambda      K        H        a         alpha
   0.317    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00012271

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated prot...  509     0.0  


>CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated protein (SKN1). 
 This family consists of the beta-glucan synthesis-associated 
proteins KRE6 and SKN1. Beta1,6-Glucan is a key component 
of the yeast cell wall, interconnecting cell wall proteins, 
beta1,3-glucan, and chitin. It has been postulated that 
the synthesis of beta1,6-glucan begins in the endoplasmic reticulum 
with the formation of protein-bound primer structures 
and that these primer structures are extended in the Golgi 
complex by two putative glucosyltransferases that are functionally 
redundant, Kre6 and Skn1. This is followed by maturation 
steps at the cell surface and by coupling to other cell 
wall macromolecules.
Length=500

 Score = 509 bits (1314),  Expect = 0.0, Method: Composition-based stats.
 Identities = 178/263 (68%), Positives = 197/263 (75%), Gaps = 6/263 (2%)

Query  1    MRDKSGPKCNPSDPLCLEVGERPLLSNIRRGLIDPDTPDSAKTKKAADGKEWILVFSDEF  60
                       +    L   + PLLS IR GLIDPDTP SA T+K+ DGK W LVFSDEF
Sbjct  66   TGVTEHGSTKGNLGEILTTYQYPLLSAIRTGLIDPDTPQSAYTRKSQDGKTWKLVFSDEF  125

Query  61   NTEGRTFYEGDDPFYQAVDLWYGVTQDLEWYDPDAVTTRNGVLEIRFDSFPNHELKYRSG  120
            N +GRTFY+GDDPF+ AVDL Y  TQDLEWYDPDAVTT NG L IR D+F NH+L YRSG
Sbjct  126  NKDGRTFYDGDDPFWTAVDLHYWATQDLEWYDPDAVTTANGTLVIRMDAFKNHDLNYRSG  185

Query  121  MVQSWNKLCFSGGRLEASISLPGAGDVSGFWPGFWAMGNLARPGYAATTEGMWPYSYHDK  180
            M+QSWNKLCF+GG +E S SLPG GDVSG WPG W MGNL RPGY ATTEG+WPYSY D 
Sbjct  186  MLQSWNKLCFTGGYIEVSASLPGYGDVSGLWPGLWTMGNLGRPGYLATTEGVWPYSY-DS  244

Query  181  CDAGITPNQSSTDGISYLPGMRLPACTCAGEDHPSPGKSRSAPEIDVIEASVTALNNNPN  240
            CDAGITPNQSS DGISYLPG RLP+CTC+GEDHP+PG  R APEID++EA V        
Sbjct  245  CDAGITPNQSSPDGISYLPGQRLPSCTCSGEDHPNPGVGRGAPEIDILEAEVDTDLG---  301

Query  241  AVIGSVSQSLQMAPFDIWYMPDY  263
              IG  SQSLQ+APFDIWYMPDY
Sbjct  302  --IGVASQSLQIAPFDIWYMPDY  322



Lambda      K        H        a         alpha
   0.316    0.136    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00012272

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated prot...  296     7e-101


>CDD:397841 pfam03935, SKN1, Beta-glucan synthesis-associated protein (SKN1). 
 This family consists of the beta-glucan synthesis-associated 
proteins KRE6 and SKN1. Beta1,6-Glucan is a key component 
of the yeast cell wall, interconnecting cell wall proteins, 
beta1,3-glucan, and chitin. It has been postulated that 
the synthesis of beta1,6-glucan begins in the endoplasmic reticulum 
with the formation of protein-bound primer structures 
and that these primer structures are extended in the Golgi 
complex by two putative glucosyltransferases that are functionally 
redundant, Kre6 and Skn1. This is followed by maturation 
steps at the cell surface and by coupling to other cell 
wall macromolecules.
Length=500

 Score = 296 bits (760),  Expect = 7e-101, Method: Composition-based stats.
 Identities = 104/143 (73%), Positives = 114/143 (80%), Gaps = 6/143 (4%)

Query  1    MVQSWNKLCFSGGRLEASISLPGAGDVSGFWPGFWAMGNLARPGYAATTEGMWPYSYHDK  60
            M+QSWNKLCF+GG +E S SLPG GDVSG WPG W MGNL RPGY ATTEG+WPYSY D 
Sbjct  186  MLQSWNKLCFTGGYIEVSASLPGYGDVSGLWPGLWTMGNLGRPGYLATTEGVWPYSY-DS  244

Query  61   CDAGITPNQSSTDGISYLPGMRLPACTCAGEDHPSPGKSRSAPEIDVIEASVTALNNNPN  120
            CDAGITPNQSS DGISYLPG RLP+CTC+GEDHP+PG  R APEID++EA V        
Sbjct  245  CDAGITPNQSSPDGISYLPGQRLPSCTCSGEDHPNPGVGRGAPEIDILEAEVDTDLG---  301

Query  121  AVIGSVSQSLQMAPFDIWYMPDY  143
              IG  SQSLQ+APFDIWYMPDY
Sbjct  302  --IGVASQSLQIAPFDIWYMPDY  322



Lambda      K        H        a         alpha
   0.316    0.134    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00012273

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463093 pfam10436, BCDHK_Adom3, Mitochondrial branched-chain a...  134     2e-39


>CDD:463093 pfam10436, BCDHK_Adom3, Mitochondrial branched-chain alpha-ketoacid 
dehydrogenase kinase.  Catabolism and synthesis of leucine, 
isoleucine and valine are finely balanced, allowing the 
body to make the most of dietary input but removing excesses 
to prevent toxic build-up of their corresponding keto-acids. 
This is the butyryl-CoA dehydrogenase, subunit A domain 
3, a largely alpha-helical bundle of the enzyme BCDHK. This 
enzyme is the regulator of the dehydrogenase complex that breaks 
branched-chain amino-acids down, by phosphorylating and 
thereby inactivating it when synthesis is required. The domain 
is associated with family HATPase_c pfam02518 which is 
towards the C-terminal.
Length=158

 Score = 134 bits (339),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 60/92 (65%), Gaps = 7/92 (8%)

Query  52   WPPELNDYNQRFAKTLQHIKRRHDSVVTTVAQGILEWKRKRQRLQIDSTVQSFLDRFYMS  111
             PP L D N++F + L+ I  RH+ VV T+AQG+LE K+          +QSFLDRF  S
Sbjct  72   PPPILED-NEKFTELLEEILDRHNDVVPTLAQGVLELKKYLS----PEEIQSFLDRFLRS  126

Query  112  RIGIRMLIGQHIALTEQTH--VRHPNYVGIIC  141
            RIGIR+L  QHIALTEQ++     P+YVGII 
Sbjct  127  RIGIRLLAEQHIALTEQSNNPSHPPDYVGIID  158



Lambda      K        H        a         alpha
   0.320    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00012277

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463093 pfam10436, BCDHK_Adom3, Mitochondrial branched-chain a...  133     1e-38


>CDD:463093 pfam10436, BCDHK_Adom3, Mitochondrial branched-chain alpha-ketoacid 
dehydrogenase kinase.  Catabolism and synthesis of leucine, 
isoleucine and valine are finely balanced, allowing the 
body to make the most of dietary input but removing excesses 
to prevent toxic build-up of their corresponding keto-acids. 
This is the butyryl-CoA dehydrogenase, subunit A domain 
3, a largely alpha-helical bundle of the enzyme BCDHK. This 
enzyme is the regulator of the dehydrogenase complex that breaks 
branched-chain amino-acids down, by phosphorylating and 
thereby inactivating it when synthesis is required. The domain 
is associated with family HATPase_c pfam02518 which is 
towards the C-terminal.
Length=158

 Score = 133 bits (336),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 60/92 (65%), Gaps = 7/92 (8%)

Query  100  WPPELNDYNQRFAKTLQHIKRRHDSVVTTVAQGILEWKRKRQRLQIDSTVQSFLDRFYMS  159
             PP L D N++F + L+ I  RH+ VV T+AQG+LE K+          +QSFLDRF  S
Sbjct  72   PPPILED-NEKFTELLEEILDRHNDVVPTLAQGVLELKKYLS----PEEIQSFLDRFLRS  126

Query  160  RIGIRMLIGQHIALTEQTH--VRHPNYVGIIC  189
            RIGIR+L  QHIALTEQ++     P+YVGII 
Sbjct  127  RIGIRLLAEQHIALTEQSNNPSHPPDYVGIID  158



Lambda      K        H        a         alpha
   0.320    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00018212

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463093 pfam10436, BCDHK_Adom3, Mitochondrial branched-chain a...  133     1e-38


>CDD:463093 pfam10436, BCDHK_Adom3, Mitochondrial branched-chain alpha-ketoacid 
dehydrogenase kinase.  Catabolism and synthesis of leucine, 
isoleucine and valine are finely balanced, allowing the 
body to make the most of dietary input but removing excesses 
to prevent toxic build-up of their corresponding keto-acids. 
This is the butyryl-CoA dehydrogenase, subunit A domain 
3, a largely alpha-helical bundle of the enzyme BCDHK. This 
enzyme is the regulator of the dehydrogenase complex that breaks 
branched-chain amino-acids down, by phosphorylating and 
thereby inactivating it when synthesis is required. The domain 
is associated with family HATPase_c pfam02518 which is 
towards the C-terminal.
Length=158

 Score = 133 bits (336),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 60/92 (65%), Gaps = 7/92 (8%)

Query  100  WPPELNDYNQRFAKTLQHIKRRHDSVVTTVAQGILEWKRKRQRLQIDSTVQSFLDRFYMS  159
             PP L D N++F + L+ I  RH+ VV T+AQG+LE K+          +QSFLDRF  S
Sbjct  72   PPPILED-NEKFTELLEEILDRHNDVVPTLAQGVLELKKYLS----PEEIQSFLDRFLRS  126

Query  160  RIGIRMLIGQHIALTEQTH--VRHPNYVGIIC  189
            RIGIR+L  QHIALTEQ++     P+YVGII 
Sbjct  127  RIGIRLLAEQHIALTEQSNNPSHPPDYVGIID  158



Lambda      K        H        a         alpha
   0.320    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00018213

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00012274

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463093 pfam10436, BCDHK_Adom3, Mitochondrial branched-chain a...  134     2e-39


>CDD:463093 pfam10436, BCDHK_Adom3, Mitochondrial branched-chain alpha-ketoacid 
dehydrogenase kinase.  Catabolism and synthesis of leucine, 
isoleucine and valine are finely balanced, allowing the 
body to make the most of dietary input but removing excesses 
to prevent toxic build-up of their corresponding keto-acids. 
This is the butyryl-CoA dehydrogenase, subunit A domain 
3, a largely alpha-helical bundle of the enzyme BCDHK. This 
enzyme is the regulator of the dehydrogenase complex that breaks 
branched-chain amino-acids down, by phosphorylating and 
thereby inactivating it when synthesis is required. The domain 
is associated with family HATPase_c pfam02518 which is 
towards the C-terminal.
Length=158

 Score = 134 bits (339),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 60/92 (65%), Gaps = 7/92 (8%)

Query  52   WPPELNDYNQRFAKTLQHIKRRHDSVVTTVAQGILEWKRKRQRLQIDSTVQSFLDRFYMS  111
             PP L D N++F + L+ I  RH+ VV T+AQG+LE K+          +QSFLDRF  S
Sbjct  72   PPPILED-NEKFTELLEEILDRHNDVVPTLAQGVLELKKYLS----PEEIQSFLDRFLRS  126

Query  112  RIGIRMLIGQHIALTEQTH--VRHPNYVGIIC  141
            RIGIR+L  QHIALTEQ++     P+YVGII 
Sbjct  127  RIGIRLLAEQHIALTEQSNNPSHPPDYVGIID  158



Lambda      K        H        a         alpha
   0.320    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00018214

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00012275

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463093 pfam10436, BCDHK_Adom3, Mitochondrial branched-chain a...  133     1e-38


>CDD:463093 pfam10436, BCDHK_Adom3, Mitochondrial branched-chain alpha-ketoacid 
dehydrogenase kinase.  Catabolism and synthesis of leucine, 
isoleucine and valine are finely balanced, allowing the 
body to make the most of dietary input but removing excesses 
to prevent toxic build-up of their corresponding keto-acids. 
This is the butyryl-CoA dehydrogenase, subunit A domain 
3, a largely alpha-helical bundle of the enzyme BCDHK. This 
enzyme is the regulator of the dehydrogenase complex that breaks 
branched-chain amino-acids down, by phosphorylating and 
thereby inactivating it when synthesis is required. The domain 
is associated with family HATPase_c pfam02518 which is 
towards the C-terminal.
Length=158

 Score = 133 bits (336),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 60/92 (65%), Gaps = 7/92 (8%)

Query  100  WPPELNDYNQRFAKTLQHIKRRHDSVVTTVAQGILEWKRKRQRLQIDSTVQSFLDRFYMS  159
             PP L D N++F + L+ I  RH+ VV T+AQG+LE K+          +QSFLDRF  S
Sbjct  72   PPPILED-NEKFTELLEEILDRHNDVVPTLAQGVLELKKYLS----PEEIQSFLDRFLRS  126

Query  160  RIGIRMLIGQHIALTEQTH--VRHPNYVGIIC  189
            RIGIR+L  QHIALTEQ++     P+YVGII 
Sbjct  127  RIGIRLLAEQHIALTEQSNNPSHPPDYVGIID  158



Lambda      K        H        a         alpha
   0.320    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00012276

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463093 pfam10436, BCDHK_Adom3, Mitochondrial branched-chain a...  133     1e-38


>CDD:463093 pfam10436, BCDHK_Adom3, Mitochondrial branched-chain alpha-ketoacid 
dehydrogenase kinase.  Catabolism and synthesis of leucine, 
isoleucine and valine are finely balanced, allowing the 
body to make the most of dietary input but removing excesses 
to prevent toxic build-up of their corresponding keto-acids. 
This is the butyryl-CoA dehydrogenase, subunit A domain 
3, a largely alpha-helical bundle of the enzyme BCDHK. This 
enzyme is the regulator of the dehydrogenase complex that breaks 
branched-chain amino-acids down, by phosphorylating and 
thereby inactivating it when synthesis is required. The domain 
is associated with family HATPase_c pfam02518 which is 
towards the C-terminal.
Length=158

 Score = 133 bits (336),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 60/92 (65%), Gaps = 7/92 (8%)

Query  100  WPPELNDYNQRFAKTLQHIKRRHDSVVTTVAQGILEWKRKRQRLQIDSTVQSFLDRFYMS  159
             PP L D N++F + L+ I  RH+ VV T+AQG+LE K+          +QSFLDRF  S
Sbjct  72   PPPILED-NEKFTELLEEILDRHNDVVPTLAQGVLELKKYLS----PEEIQSFLDRFLRS  126

Query  160  RIGIRMLIGQHIALTEQTH--VRHPNYVGIIC  189
            RIGIR+L  QHIALTEQ++     P+YVGII 
Sbjct  127  RIGIRLLAEQHIALTEQSNNPSHPPDYVGIID  158



Lambda      K        H        a         alpha
   0.320    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00012278

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00012279

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00012280

Length=842
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366778 pfam01735, PLA2_B, Lysophospholipase catalytic domain....  125     8e-31


>CDD:366778 pfam01735, PLA2_B, Lysophospholipase catalytic domain.  This 
family consists of Lysophospholipase / phospholipase B EC:3.1.1.5 
and cytosolic phospholipase A2 EC:3.1.4 which also has 
a C2 domain pfam00168. Phospholipase B enzymes catalyze the 
release of fatty acids from lysophsopholipids and are capable 
in vitro of hydrolysing all phospholipids extractable form 
yeast cells. Cytosolic phospholipase A2 associates with natural 
membranes in response to physiological increases in Ca2+ 
and selectively hydrolyzes arachidonyl phospholipids, the 
aligned region corresponds the the carboxy-terminal Ca2+-independent 
catalytic domain of the protein as discussed in.
Length=490

 Score = 125 bits (316),  Expect = 8e-31, Method: Composition-based stats.
 Identities = 110/406 (27%), Positives = 155/406 (38%), Gaps = 91/406 (22%)

Query  219  IAMCGSGGGLRALVAGTGSYLAA---------QEVGLWDCVTYTAGVSGSCWLQTLYHSS  269
            I + GSGGG RA++ G G  LAA            GL    TY AG+SG  WL      S
Sbjct  1    IGIAGSGGGYRAMLGGAGV-LAALDNRTDNETGLGGLLQSATYLAGLSGGSWLV----GS  55

Query  270  ITGRDYNRLVDHLKNRLGV------HIAFPPKALNLLTTAPTNKYLLSGLVEKL--KGDP  321
            +   ++  + D       +      H  F P  LN+    P N      +V+ +  K + 
Sbjct  56   LAVNNFTSVQDFPDKPEDISIWDLNHSIFNPGGLNI----PQNIKRYDDIVDAVWKKKNA  111

Query  322  GADFGLVDIYGMLLAARLLVPKGELGVSHQDLKLSNQRY--NLYNGAHPMPIYTAVRHEI  379
            G +  L DI+G  L +  L+P    G    +   S+ R      N   P PI  A     
Sbjct  112  GFNVSLTDIWGRAL-SYTLIPSLRGGP---NYTWSSLRDAEWFQNAEMPFPIIVAD-GRK  166

Query  380  PVLEAVEDEEPKKEITPEKLIKASQREAWFQWFEFTPFEF--FCEELGAGIPTWALGRHF  437
            P             I     + A+        FEF+P+EF  +   L +  PT  LG  F
Sbjct  167  P------GT---TVIN----LNAT-------VFEFSPYEFGSWDPTLNSFTPTEYLGTKF  206

Query  438  NGGHNVVPHGEYPLPEMRVPGLMGVWGSAFCATL-----------SHYYKEVRPLLRGIV  486
              G  V      P  +       G       +TL           S     +  +++ I+
Sbjct  207  FNGTPVKKGKCVPGFD-----NAGFVMGTS-STLFNQFLLVINSTSSLPSFLNIIIKHIL  260

Query  487  GFGGIDSLIQGKSKDLIRVHPIDPATIPNYVLGMKGQLPPSCPESIFQSEYLRLMDAGMS  546
                 DS       D I  +P +P    N +             SI  S+ L L+D G  
Sbjct  261  KDLSEDS-------DDISQYPPNPFQDANDINQNATN-------SIVDSDTLFLVDGGED  306

Query  547  N-NLPIYPLLRPGRDVDIIVAFDASADIKQENWL---SVVDGYARQ  588
              N+P++PLL+P RDVD+I A D SAD    +W    S+VD Y RQ
Sbjct  307  GQNIPLWPLLQPERDVDVIFAVDNSADT-DNDWPDGVSLVDTYERQ  351



Lambda      K        H        a         alpha
   0.316    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1072328958


Query= TCONS_00012281

Length=428


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00012282

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00018217

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00012283

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00012284

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00012286

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00012285

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00012287

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00012288

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00012290

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  97.4    2e-23


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 97.4 bits (243),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 55/232 (24%), Positives = 89/232 (38%), Gaps = 41/232 (18%)

Query  135  MDEHNGHKEENSSHAWIGVALISGFILMYLIDKLPEFATPSKQQRPPYH-----------  183
              E     +      + G+ ++ GF+L+ L++KL  +        P  +           
Sbjct  64   ALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVKSV  123

Query  184  ---------ISLDNLGSGLRRNPSPSREGELLDAGSTSSRSHSFATTT------------  222
                        D+       + S     +     S S    S                 
Sbjct  124  SNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAILL  183

Query  223  --GLVIHAAADGIALGASTSDTGLSFIIFLAIMVHKAPASFGLTSVLLKQGVSSRTARAH  280
              G+++H+  +G+ALG S S +     +F+AI+ HK P   GL ++LL+ G S + A   
Sbjct  184  ELGIILHSFFEGLALGVS-SSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAVLL  242

Query  281  LVVFSLAAPFGALATFLFVRIVGSGSSGDEAATLWRTGMLLLFSAGTFLYVA  332
             ++F+L  P G L       I  S  +         +G+LL FSAGTFLYVA
Sbjct  243  ALLFALTTPLGILIGIGVSSIGNSPGA------DITSGILLAFSAGTFLYVA  288



Lambda      K        H        a         alpha
   0.318    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00012289

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  97.4    2e-23


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 97.4 bits (243),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 55/232 (24%), Positives = 89/232 (38%), Gaps = 41/232 (18%)

Query  135  MDEHNGHKEENSSHAWIGVALISGFILMYLIDKLPEFATPSKQQRPPYH-----------  183
              E     +      + G+ ++ GF+L+ L++KL  +        P  +           
Sbjct  64   ALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVKSV  123

Query  184  ---------ISLDNLGSGLRRNPSPSREGELLDAGSTSSRSHSFATTT------------  222
                        D+       + S     +     S S    S                 
Sbjct  124  SNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAILL  183

Query  223  --GLVIHAAADGIALGASTSDTGLSFIIFLAIMVHKAPASFGLTSVLLKQGVSSRTARAH  280
              G+++H+  +G+ALG S S +     +F+AI+ HK P   GL ++LL+ G S + A   
Sbjct  184  ELGIILHSFFEGLALGVS-SSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAVLL  242

Query  281  LVVFSLAAPFGALATFLFVRIVGSGSSGDEAATLWRTGMLLLFSAGTFLYVA  332
             ++F+L  P G L       I  S  +         +G+LL FSAGTFLYVA
Sbjct  243  ALLFALTTPLGILIGIGVSSIGNSPGA------DITSGILLAFSAGTFLYVA  288



Lambda      K        H        a         alpha
   0.318    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00012291

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  100     7e-25


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 100 bits (252),  Expect = 7e-25, Method: Composition-based stats.
 Identities = 55/232 (24%), Positives = 89/232 (38%), Gaps = 41/232 (18%)

Query  93   MDEHNGHKEENSSHAWIGVALISGFILMYLIDKLPEFATPSKQQRPPYH-----------  141
              E     +      + G+ ++ GF+L+ L++KL  +        P  +           
Sbjct  64   ALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVKSV  123

Query  142  ---------ISLDNLGSGLRRNPSPSREGELLDAGSTSSRSHSFATTT------------  180
                        D+       + S     +     S S    S                 
Sbjct  124  SNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAILL  183

Query  181  --GLVIHAAADGIALGASTSDTGLSFIIFLAIMVHKAPASFGLTSVLLKQGVSSRTARAH  238
              G+++H+  +G+ALG S S +     +F+AI+ HK P   GL ++LL+ G S + A   
Sbjct  184  ELGIILHSFFEGLALGVS-SSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAVLL  242

Query  239  LVVFSLAAPFGALATFLFVRIVGSGSSGDEAATLWRTGMLLLFSAGTFLYVA  290
             ++F+L  P G L       I  S  +         +G+LL FSAGTFLYVA
Sbjct  243  ALLFALTTPLGILIGIGVSSIGNSPGA------DITSGILLAFSAGTFLYVA  288



Lambda      K        H        a         alpha
   0.317    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00012292

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  100     7e-25


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 100 bits (252),  Expect = 7e-25, Method: Composition-based stats.
 Identities = 55/232 (24%), Positives = 89/232 (38%), Gaps = 41/232 (18%)

Query  93   MDEHNGHKEENSSHAWIGVALISGFILMYLIDKLPEFATPSKQQRPPYH-----------  141
              E     +      + G+ ++ GF+L+ L++KL  +        P  +           
Sbjct  64   ALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVKSV  123

Query  142  ---------ISLDNLGSGLRRNPSPSREGELLDAGSTSSRSHSFATTT------------  180
                        D+       + S     +     S S    S                 
Sbjct  124  SNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAILL  183

Query  181  --GLVIHAAADGIALGASTSDTGLSFIIFLAIMVHKAPASFGLTSVLLKQGVSSRTARAH  238
              G+++H+  +G+ALG S S +     +F+AI+ HK P   GL ++LL+ G S + A   
Sbjct  184  ELGIILHSFFEGLALGVS-SSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAVLL  242

Query  239  LVVFSLAAPFGALATFLFVRIVGSGSSGDEAATLWRTGMLLLFSAGTFLYVA  290
             ++F+L  P G L       I  S  +         +G+LL FSAGTFLYVA
Sbjct  243  ALLFALTTPLGILIGIGVSSIGNSPGA------DITSGILLAFSAGTFLYVA  288



Lambda      K        H        a         alpha
   0.317    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00012293

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463757 pfam12937, F-box-like, F-box-like. This is an F-box-li...  56.0    5e-11


>CDD:463757 pfam12937, F-box-like, F-box-like.  This is an F-box-like family.
Length=45

 Score = 56.0 bits (136),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 20/42 (48%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query  129  PTELCLRVLSFIDDPKTLARASQVSRRWRDLLSDEITWKNLC  170
            P E+ L++ S++D PK L R + V RRWR+L SD+  W+ LC
Sbjct  5    PDEILLQIFSYLD-PKDLLRLALVCRRWRELASDDSLWRRLC  45



Lambda      K        H        a         alpha
   0.318    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 745719572


Query= TCONS_00018220

Length=329
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  89.0    1e-20


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 89.0 bits (221),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 52/229 (23%), Positives = 86/229 (38%), Gaps = 41/229 (18%)

Query  135  MDEHNGHKEENSSHAWIGVALISGFILMYLIDKLPEFATPSKQQRPPYH-----------  183
              E     +      + G+ ++ GF+L+ L++KL  +        P  +           
Sbjct  64   ALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVKSV  123

Query  184  ---------ISLDNLGSGLRRNPSPSREGELLDAGSTSSRSHSFATTT------------  222
                        D+       + S     +     S S    S                 
Sbjct  124  SNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAILL  183

Query  223  --GLVIHAAADGIALGASTSDTGLSFIIFLAIMVHKAPASFGLTSVLLKQGVSSRTARAH  280
              G+++H+  +G+ALG S S +     +F+AI+ HK P   GL ++LL+ G S + A   
Sbjct  184  ELGIILHSFFEGLALGVS-SSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAVLL  242

Query  281  LVVFSLAAPFGALATFLFVRIVGSGSSGDEAATLWRTGMLLLFSAGTFL  329
             ++F+L  P G L       I  S  +         +G+LL FSAGTFL
Sbjct  243  ALLFALTTPLGILIGIGVSSIGNSPGA------DITSGILLAFSAGTFL  285



Lambda      K        H        a         alpha
   0.318    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 385413556


Query= TCONS_00012294

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  97.4    2e-23


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 97.4 bits (243),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 55/232 (24%), Positives = 89/232 (38%), Gaps = 41/232 (18%)

Query  135  MDEHNGHKEENSSHAWIGVALISGFILMYLIDKLPEFATPSKQQRPPYH-----------  183
              E     +      + G+ ++ GF+L+ L++KL  +        P  +           
Sbjct  64   ALESLCLSDHGWHFPFAGLIVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVKSV  123

Query  184  ---------ISLDNLGSGLRRNPSPSREGELLDAGSTSSRSHSFATTT------------  222
                        D+       + S     +     S S    S                 
Sbjct  124  SNVEVTESEEGEDHGHLHGHDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAILL  183

Query  223  --GLVIHAAADGIALGASTSDTGLSFIIFLAIMVHKAPASFGLTSVLLKQGVSSRTARAH  280
              G+++H+  +G+ALG S S +     +F+AI+ HK P   GL ++LL+ G S + A   
Sbjct  184  ELGIILHSFFEGLALGVS-SSSDTGISLFIAILFHKIPEGLGLGAILLQAGFSRKKAVLL  242

Query  281  LVVFSLAAPFGALATFLFVRIVGSGSSGDEAATLWRTGMLLLFSAGTFLYVA  332
             ++F+L  P G L       I  S  +         +G+LL FSAGTFLYVA
Sbjct  243  ALLFALTTPLGILIGIGVSSIGNSPGA------DITSGILLAFSAGTFLYVA  288



Lambda      K        H        a         alpha
   0.318    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00012295

Length=402


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00012296

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463757 pfam12937, F-box-like, F-box-like. This is an F-box-li...  56.0    5e-11


>CDD:463757 pfam12937, F-box-like, F-box-like.  This is an F-box-like family.
Length=45

 Score = 56.0 bits (136),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 20/42 (48%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query  129  PTELCLRVLSFIDDPKTLARASQVSRRWRDLLSDEITWKNLC  170
            P E+ L++ S++D PK L R + V RRWR+L SD+  W+ LC
Sbjct  5    PDEILLQIFSYLD-PKDLLRLALVCRRWRELASDDSLWRRLC  45



Lambda      K        H        a         alpha
   0.318    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 822932820


Query= TCONS_00018222

Length=333


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00012297

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463757 pfam12937, F-box-like, F-box-like. This is an F-box-li...  56.0    5e-11


>CDD:463757 pfam12937, F-box-like, F-box-like.  This is an F-box-like family.
Length=45

 Score = 56.0 bits (136),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 20/42 (48%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query  129  PTELCLRVLSFIDDPKTLARASQVSRRWRDLLSDEITWKNLC  170
            P E+ L++ S++D PK L R + V RRWR+L SD+  W+ LC
Sbjct  5    PDEILLQIFSYLD-PKDLLRLALVCRRWRELASDDSLWRRLC  45



Lambda      K        H        a         alpha
   0.318    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 745719572


Query= TCONS_00012299

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460604 pfam02582, DUF155, Uncharacterized ACR, YagE family CO...  218     2e-69


>CDD:460604 pfam02582, DUF155, Uncharacterized ACR, YagE family COG1723. 
 
Length=173

 Score = 218 bits (558),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 74/175 (42%), Positives = 117/175 (67%), Gaps = 6/175 (3%)

Query  309  VFLFDYGTVVIWGMSPAQESRFLSDVSKFANSILSPEDT---QVENFNFYYAREYQARIY  365
            VF+F YG VV W +S  +E RFL D+ +FA     P      + E F++ Y  E  +RI 
Sbjct  1    VFVFRYGVVVFWNLSEEEEKRFLKDLLRFAEEPSIPPLLEEEETEEFDYVYPSE--SRIQ  58

Query  366  NDFISLRDPRNHMIKLAISHALSQSVKTSLFEDLVSETISNTAPLPAQIAQTGSVNMTRR  425
            ND I L    + + KLAISHAL+QSVK S+FE+L+ + + +T  +P ++A+TG + ++R+
Sbjct  59   NDIIVLGS-DDLLAKLAISHALAQSVKLSVFEELLDKLLESTESIPEELAKTGKLKLSRK  117

Query  426  QINMQIGELFILRINIHLQGSVLDSPELMWAEPQLEPVYQAVRSYLEMDQRVSLL  480
            ++  +IGEL +LR +I+L   +LD+P+  W EP+LEP+Y+A+R YLE+ +R+ +L
Sbjct  118  ELLKKIGELLLLRHDINLNSELLDTPDFFWEEPELEPLYEALREYLEIKERIEVL  172



Lambda      K        H        a         alpha
   0.314    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 666189040


Query= TCONS_00012298

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463757 pfam12937, F-box-like, F-box-like. This is an F-box-li...  56.0    5e-11


>CDD:463757 pfam12937, F-box-like, F-box-like.  This is an F-box-like family.
Length=45

 Score = 56.0 bits (136),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 20/42 (48%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query  129  PTELCLRVLSFIDDPKTLARASQVSRRWRDLLSDEITWKNLC  170
            P E+ L++ S++D PK L R + V RRWR+L SD+  W+ LC
Sbjct  5    PDEILLQIFSYLD-PKDLLRLALVCRRWRELASDDSLWRRLC  45



Lambda      K        H        a         alpha
   0.318    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 745719572


Query= TCONS_00012301

Length=522


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 652562446


Query= TCONS_00012300

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463757 pfam12937, F-box-like, F-box-like. This is an F-box-li...  56.0    5e-11


>CDD:463757 pfam12937, F-box-like, F-box-like.  This is an F-box-like family.
Length=45

 Score = 56.0 bits (136),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 20/42 (48%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query  129  PTELCLRVLSFIDDPKTLARASQVSRRWRDLLSDEITWKNLC  170
            P E+ L++ S++D PK L R + V RRWR+L SD+  W+ LC
Sbjct  5    PDEILLQIFSYLD-PKDLLRLALVCRRWRELASDDSLWRRLC  45



Lambda      K        H        a         alpha
   0.318    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 822932820


Query= TCONS_00018223

Length=522


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 652562446


Query= TCONS_00012302

Length=273


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00018225

Length=132
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        66.9    4e-16


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 66.9 bits (164),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 19/74 (26%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query  1   MALCPFEAIKVRMQT---TLPPYAHNLREGWSKVVAKEGFGGLYKGLYPLWARQIPYTMT  57
               P + +K R+Q    +       + + + K+  +EG  GLYKGL P   R  P    
Sbjct  21  TVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAI  80

Query  58  KFATFEESVNMIYR  71
            F T+E    ++ +
Sbjct  81  YFGTYETLKRLLLK  94



Lambda      K        H        a         alpha
   0.324    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00018227

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        79.6    1e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 79.6 bits (197),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 45/96 (47%), Gaps = 4/96 (4%)

Query  17   SSKYFLSCALGGIVACGPTHTAVTPLDLVKCRRQVDPSIYTSN----LSAWRQIFSKEGL  72
            S   FL+  L G +A     T   PLD+VK R QV      S     L  +++I+ +EG+
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGI  60

Query  73   RGVFFGWSPTFIGYSFQGAGKYGLYEYFKYLYGDHL  108
            RG++ G  P  +  +   A  +G YE  K L    L
Sbjct  61   RGLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLKKL  96


 Score = 74.2 bits (183),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 23/86 (27%), Positives = 36/86 (42%), Gaps = 3/86 (3%)

Query  119  LGASASAEFFADMALCPFEAIKVRMQT---TLPPYAHNLREGWSKVVAKEGFGGLYKGLY  175
            L A   A   A     P + +K R+Q    +       + + + K+  +EG  GLYKGL 
Sbjct  9    LLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLL  68

Query  176  PLWARQIPYTMTKFATFEESVNMIYR  201
            P   R  P     F T+E    ++ +
Sbjct  69   PNLLRVAPAAAIYFGTYETLKRLLLK  94



Lambda      K        H        a         alpha
   0.323    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00012304

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        73.1    3e-17


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 73.1 bits (180),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 23/86 (27%), Positives = 36/86 (42%), Gaps = 3/86 (3%)

Query  111  LGASASAEFFADMALCPFEAIKVRMQT---TLPPYAHNLREGWSKVVAKEGFGGLYKGLY  167
            L A   A   A     P + +K R+Q    +       + + + K+  +EG  GLYKGL 
Sbjct  9    LLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLL  68

Query  168  PLWARQIPYTMTKFATFEESVNMIYR  193
            P   R  P     F T+E    ++ +
Sbjct  69   PNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 71.9 bits (177),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (5%)

Query  22  LSCALGGIVVTPLDLVKCRRQVDPSIYTSN----LSAWRQIFSKEGLRGVFFGWSPTFIG  77
           ++ A+   V  PLD+VK R QV      S     L  +++I+ +EG+RG++ G  P  + 
Sbjct  14  IAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLLPNLLR  73

Query  78  YSFQGAGKYGLYEYFKYLYGDHL  100
            +   A  +G YE  K L    L
Sbjct  74  VAPAAAIYFGTYETLKRLLLKKL  96



Lambda      K        H        a         alpha
   0.324    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00012303

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        74.2    2e-17


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 74.2 bits (183),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 23/86 (27%), Positives = 36/86 (42%), Gaps = 3/86 (3%)

Query  111  LGASASAEFFADMALCPFEAIKVRMQT---TLPPYAHNLREGWSKVVAKEGFGGLYKGLY  167
            L A   A   A     P + +K R+Q    +       + + + K+  +EG  GLYKGL 
Sbjct  9    LLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLL  68

Query  168  PLWARQIPYTMTKFATFEESVNMIYR  193
            P   R  P     F T+E    ++ +
Sbjct  69   PNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 73.1 bits (180),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (5%)

Query  22  LSCALGGIVVTPLDLVKCRRQVDPSIYTSN----LSAWRQIFSKEGLRGVFFGWSPTFIG  77
           ++ A+   V  PLD+VK R QV      S     L  +++I+ +EG+RG++ G  P  + 
Sbjct  14  IAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLLPNLLR  73

Query  78  YSFQGAGKYGLYEYFKYLYGDHL  100
            +   A  +G YE  K L    L
Sbjct  74  VAPAAAIYFGTYETLKRLLLKKL  96



Lambda      K        H        a         alpha
   0.323    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00018228

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00012306

Length=299
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        71.9    1e-16


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 71.9 bits (177),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 23/86 (27%), Positives = 36/86 (42%), Gaps = 3/86 (3%)

Query  111  LGASASAEFFADMALCPFEAIKVRMQT---TLPPYAHNLREGWSKVVAKEGFGGLYKGLY  167
            L A   A   A     P + +K R+Q    +       + + + K+  +EG  GLYKGL 
Sbjct  9    LLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLL  68

Query  168  PLWARQIPYTMTKFATFEESVNMIYR  193
            P   R  P     F T+E    ++ +
Sbjct  69   PNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 70.8 bits (174),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (5%)

Query  22  LSCALGGIVVTPLDLVKCRRQVDPSIYTSN----LSAWRQIFSKEGLRGVFFGWSPTFIG  77
           ++ A+   V  PLD+VK R QV      S     L  +++I+ +EG+RG++ G  P  + 
Sbjct  14  IAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLLPNLLR  73

Query  78  YSFQGAGKYGLYEYFKYLYGDHL  100
            +   A  +G YE  K L    L
Sbjct  74  VAPAAAIYFGTYETLKRLLLKKL  96



Lambda      K        H        a         alpha
   0.323    0.140    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00018229

Length=169
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        65.4    4e-15


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 65.4 bits (160),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 19/74 (26%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query  1   MALCPFEAIKVRMQT---TLPPYAHNLREGWSKVVAKEGFGGLYKGLYPLWARQIPYTMT  57
               P + +K R+Q    +       + + + K+  +EG  GLYKGL P   R  P    
Sbjct  21  TVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAI  80

Query  58  KFATFEESVNMIYR  71
            F T+E    ++ +
Sbjct  81  YFGTYETLKRLLLK  94



Lambda      K        H        a         alpha
   0.323    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00012307

Length=132
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        66.9    4e-16


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 66.9 bits (164),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 19/74 (26%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query  1   MALCPFEAIKVRMQT---TLPPYAHNLREGWSKVVAKEGFGGLYKGLYPLWARQIPYTMT  57
               P + +K R+Q    +       + + + K+  +EG  GLYKGL P   R  P    
Sbjct  21  TVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAI  80

Query  58  KFATFEESVNMIYR  71
            F T+E    ++ +
Sbjct  81  YFGTYETLKRLLLK  94



Lambda      K        H        a         alpha
   0.324    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00012308

Length=248


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.124    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00012309

Length=4925
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:407722 pfam17865, AAA_lid_5, Midasin AAA lid domain. This ent...  112     2e-29
CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily...  106     6e-27
CDD:465540 pfam17867, AAA_lid_7, Midasin AAA lid domain. This ent...  86.6    4e-20


>CDD:407722 pfam17865, AAA_lid_5, Midasin AAA lid domain.  This entry represents 
the alpha helical AAA+ lid domain that is found to the 
C-terminus of AAA domains. This lid domain is found in midasin 
proteins.
Length=104

 Score = 112 bits (283),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 45/87 (52%), Positives = 59/87 (68%), Gaps = 2/87 (2%)

Query  905  IQKYLGDLAIGDSRVVSDLAQLYMETKKLNNENKLTDGAGQRPHFSIRTLVRALIYVLEN  964
            ++ YL  ++  D  +V D+ + Y+E KKL  +  L DGAGQRPH+S+RTL RAL Y    
Sbjct  6    VKAYLKGVSS-DDDLVRDIVKFYLEAKKLAEK-SLVDGAGQRPHYSLRTLCRALSYARAI  63

Query  965  AHIYGLRRAVFEGYCMSFLTVLSQESE  991
            A  YGLRRA++EG+CMSFLT L  ES 
Sbjct  64   APRYGLRRALYEGFCMSFLTQLDAESR  90


>CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily).  This 
Pfam entry includes some of the AAA proteins not detected 
by the pfam00004 model.
Length=135

 Score = 106 bits (268),  Expect = 6e-27, Method: Composition-based stats.
 Identities = 51/138 (37%), Positives = 63/138 (46%), Gaps = 4/138 (3%)

Query  1070  PVLLQGPTSAGKTSMIEYLAK-VSGNKFVRINNHEHTDLQEYLGSYVSGDDGTLRYQEGV  1128
              VLL GP   GKT + E LA  +S      +     T  ++  G       G   + +G 
Sbjct  1     GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLFGRRNIDPGGA-SWVDGP  59

Query  1129  LVEALRNGYWIVLDELNLAPSDVLEALNRLLDDNRELFIPETQEVVHPHPNFMLFATQNP  1188
             LV A R G   VLDE+N A  DVL +L  LLD+ R L     + V      F L AT NP
Sbjct  60    LVRAAREGEIAVLDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAAPDGFRLIATMNP  119

Query  1189  AGLYGGRKVLSRAFRNRF  1206
               L  G   LS A R+RF
Sbjct  120   --LDRGLNELSPALRSRF  135


 Score = 88.1 bits (219),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 50/143 (35%), Positives = 66/143 (46%), Gaps = 11/143 (8%)

Query  1739  PILLEGSPGVGKTTLVTALARAL-GKPLTRINLSEQTDLTDLFGSDVPVEGGDVGQFTWR  1797
              +LL G PG GKT L   LA AL  +P+  + L+  T   DLFG      GG      W 
Sbjct  1     GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLFGRRNIDPGGAS----WV  56

Query  1798  DAPFLQAMQRGDWVLLDEMNLASQSVLEGLNSCLDHR--QTVYVAELDQTFSRHPDFVLF  1855
             D P ++A + G+  +LDE+N A+  VL  L S LD R        EL +  +    F L 
Sbjct  57    DGPLVRAAREGEIAVLDEINRANPDVLNSLLSLLDERRLLLPDGGELVK--AAPDGFRLI  114

Query  1856  AAQNPHHQGGGRKGLPASFVNRF  1878
             A  NP     G   L  +  +RF
Sbjct  115   ATMNP--LDRGLNELSPALRSRF  135


 Score = 83.9 bits (208),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 38/120 (32%), Positives = 64/120 (53%), Gaps = 4/120 (3%)

Query  298  PILLVGLPNSGKTTLVNDVAATMGQLESMVTLHLNEQTDAKSLLGMYSTSPATGSFAWQP  357
             +LLVG P +GKT L   +AA +          L   T  + L G    +   G  +W  
Sbjct  1    GVLLVGPPGTGKTELAERLAAALSNRPVFYVQ-LTRDTTEEDLFG--RRNIDPGGASWVD  57

Query  358  GVLTKAAREGRWILIEDLDRAPSEVIGLILPIIEKGELTIASRKERIKCA-EGFKIIATM  416
            G L +AAREG   ++++++RA  +V+  +L ++++  L +    E +K A +GF++IATM
Sbjct  58   GPLVRAAREGEIAVLDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAAPDGFRLIATM  117


 Score = 82.3 bits (204),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 66/200 (33%)

Query  1360  PVLLVGETGCGKTQLCQAVAE-ICRKQLFIVNAHVNLETGDLIGAQRPVRNRAAIETQLL  1418
              VLLVG  G GKT+L + +A  +  + +F V    +    DL G                
Sbjct  1     GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLFG----------------  44

Query  1419  NDLRTVVNTGDAEPRSLDELRSTFSAMTVEQLEACDSEIVQRIQKNIARLNALFEWSDGS  1478
                           R++D                                     W DG 
Sbjct  45    -------------RRNIDPG--------------------------------GASWVDGP  59

Query  1479  LITAMKTGQFFLLDEISLADDSVLERLNSVLEPHRSILLAEKGPIDSMVVAHEGFQFLST  1538
             L+ A + G+  +LDEI+ A+  VL  L S+L+  R +LL + G +  +  A +GF+ ++T
Sbjct  60    LVRAAREGEIAVLDEINRANPDVLNSLLSLLD-ERRLLLPDGGEL--VKAAPDGFRLIAT  116

Query  1539  MNPGGDYGKRELSAALRNRM  1558
             MNP  D G  ELS ALR+R 
Sbjct  117   MNP-LDRGLNELSPALRSRF  135


 Score = 65.8 bits (161),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 42/127 (33%), Positives = 54/127 (43%), Gaps = 21/127 (17%)

Query  774  WERFAAQLNDFEAQVSQGDAK--------------FAFAFVQGKIVRALRNGEWVLLDEV  819
             ER AA L++      Q                     ++V G +VRA R GE  +LDE+
Sbjct  16   AERLAAALSNRPVFYVQLTRDTTEEDLFGRRNIDPGGASWVDGPLVRAAREGEIAVLDEI  75

Query  820  NLASPDTLENIASLLHHGSEGSPSVLLSEAGDVERVFGHPDFRIFGAMNPATDAGKKDLP  879
            N A+PD L ++ SLL          LL   G          FR+   MNP  D G  +L 
Sbjct  76   NRANPDVLNSLLSLLDER------RLLLPDGGELVKAAPDGFRLIATMNPL-DRGLNELS  128

Query  880  PGLRSRF  886
            P LRSRF
Sbjct  129  PALRSRF  135


>CDD:465540 pfam17867, AAA_lid_7, Midasin AAA lid domain.  This entry represents 
the alpha helical AAA+ lid domain that is found to the 
C-terminus of AAA domains. This lid domain is found in midasin 
proteins.
Length=106

 Score = 86.6 bits (215),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 35/114 (31%), Positives = 55/114 (48%), Gaps = 9/114 (8%)

Query  451  EIREVIIRKFPLLEPRVPVIMDVYQRVCSSFHGSLAIKSS-QGRTPGLRDLIKLCTRLHM  509
            ++ +++  +FPLL      +++VY R+      S +  SS   R   LRDL++ C RL  
Sbjct  1    DLEQILSHRFPLLASLAEKLIEVYSRLQELVSSSRSFGSSGSPREFNLRDLLRWCRRLSS  60

Query  510  RLQRLGVKTGYEATPEVVEDEIFLDVVDVFLRYIPEKALADSLALVVAEALQIS  563
             L  L            V +EIFL+ VDVF          +++A ++AE L IS
Sbjct  61   LLPTL--------LSPTVREEIFLEAVDVFAGRFRTPEDREAVAELIAEVLGIS  106


 Score = 85.4 bits (212),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 30/104 (29%), Positives = 48/104 (46%), Gaps = 8/104 (8%)

Query  1890  DLKKICAKLFPGSPPPQTDGLVDFVSLLNETINQERRLGAVGGPWEVNLRDIQRWLQLAD  1949
             DL++I +  FP       + L++  S L E ++  R  G+ G P E NLRD+ RW +   
Sbjct  1     DLEQILSHRFP-LLASLAEKLIEVYSRLQELVSSSRSFGSSGSPREFNLRDLLRWCRRLS  59

Query  1950  RGDLQVPANN-------FLDVVISQRFRSEEDRQLVSQLYQRVF  1986
                  + +             V + RFR+ EDR+ V++L   V 
Sbjct  60    SLLPTLLSPTVREEIFLEAVDVFAGRFRTPEDREAVAELIAEVL  103


 Score = 75.4 bits (186),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 11/106 (10%)

Query  1218  ELEFILKERSQIAPSFCTRIVSVYRKLSLLRQANRLFEQKNS--FATLRDLFRWALR---  1272
             +LE IL  R  +  S   +++ VY +L  L  ++R F    S     LRDL RW  R   
Sbjct  1     DLEQILSHRFPLLASLAEKLIEVYSRLQELVSSSRSFGSSGSPREFNLRDLLRWCRRLSS  60

Query  1273  ------RADDREQLAVNGFMLLAERVRNPQERAAVKAVIEEVMKVP  1312
                       RE++ +    + A R R P++R AV  +I EV+ + 
Sbjct  61    LLPTLLSPTVREEIFLEAVDVFAGRFRTPEDREAVAELIAEVLGIS  106



Lambda      K        H        a         alpha
   0.317    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5780915844


Query= TCONS_00012310

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0878    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00012311

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.150    0.589    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00012312

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00012313

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  102     1e-26


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 102 bits (256),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 33/92 (36%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query  179  FTIQRTLGTGSFGRVHLVQSKHNHRFYAIKVLKKAQVVKMKQVEHTNDERRMLNRVRHPF  238
            + + R LG+GSFG V+  + +   +  AIK +KK ++ K K  ++   E ++L ++ HP 
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKD-KNILREIKILKKLNHPN  59

Query  239  LITLWGTWQDARNLYMVMDFVEGGELFSLLRK  270
            ++ L+  ++D  NLY+V+++VEGG LF LL +
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSE  91



Lambda      K        H        a         alpha
   0.313    0.123    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00018231

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00012314

Length=677
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465326 pfam16978, CRIM, SAPK-interacting protein 1 (Sin1), mi...  178     2e-53
CDD:465327 pfam16979, SIN1_PH, SAPK-interacting protein 1 (Sin1),...  158     1e-46


>CDD:465326 pfam16978, CRIM, SAPK-interacting protein 1 (Sin1), middle CRIM 
domain.  CRIM is a domain in the middle of Sin1 that is important 
in the substrate recognition of TORC2. It is conserved 
from yeast to humans. TOR is a serine/threonine-specific 
protein kinase and forms functionally distinct protein complexes 
referred to as TORC1 and TORC2.
Length=137

 Score = 178 bits (453),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 71/153 (46%), Positives = 92/153 (60%), Gaps = 29/153 (19%)

Query  199  TSLLTQALKARMKAPTNPVEKFAVLSGKGLA-DALNIKLYLPFSSDPEEPLDLQLARESK  257
             SLL+  LKA+ K+P+NP+E +A LSGKG   + L IK+Y PFS+ P +P ++++ +   
Sbjct  1    KSLLSALLKAKKKSPSNPLEYYAFLSGKGEPSNPLKIKIYFPFSTSPSKPFEVKVRK---  57

Query  258  LADQPAPVTVAEAIGLALWRYSEEGREPAIERNKLNVNRWTLRMV-EDGEVEYDFPPLSR  316
                    TVAE IGL LWRYSEE REP ++  KLN NRWTLR+V EDGEV+ DFP L R
Sbjct  58   ------DATVAEVIGLILWRYSEEKREPPLDEEKLNPNRWTLRIVEEDGEVDEDFPALDR  111

Query  317  ASHIADFTSNNNNRATGVRGRSRGKQYDEFALV  349
               I+ F                   +DEFALV
Sbjct  112  TRPISKFG------------------FDEFALV  126


>CDD:465327 pfam16979, SIN1_PH, SAPK-interacting protein 1 (Sin1), Pleckstrin-homology. 
 SIN1_PH is a pleckstrin-homology domain found 
at the C-terminus of SIN1. It is conserved from yeast to humans. 
PH-domains are involved in intracellular signalling or 
as constituents of the cytoskeleton. SIN1 (SAPK-interacting 
protein 1) plays an essential role in signal transduction, 
anf the PH domain is involved in lipid and membrane binding.
Length=104

 Score = 158 bits (402),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 51/107 (48%), Positives = 65/107 (61%), Gaps = 4/107 (4%)

Query  569  YYRRYHVFRKQSMSFTTSNHRILTFDNDYMHIMPGDTGKA-ASDTKTRSISFNDVVGCKV  627
             Y++Y V+RKQ MS    + R L  D DY+HIMP +  K  +   KT S   + VVGCK 
Sbjct  1    AYKKYTVWRKQKMSRA-KHERTLAIDGDYIHIMPSENKKFWSESGKTTSYHISSVVGCKQ  59

Query  628  SRRHPKNFRVVVLRGNDANEQKRYDFEARNALEAVEIVDEIKKNMAH  674
            S R P NF++VV R  D+ E KRYDFEA +  EA EIV +IKK +  
Sbjct  60   SERKPSNFKIVVYR--DSREFKRYDFEADSPKEAAEIVQKIKKILEM  104



Lambda      K        H        a         alpha
   0.312    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 861277360


Query= TCONS_00012315

Length=677
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465326 pfam16978, CRIM, SAPK-interacting protein 1 (Sin1), mi...  178     2e-53
CDD:465327 pfam16979, SIN1_PH, SAPK-interacting protein 1 (Sin1),...  158     1e-46


>CDD:465326 pfam16978, CRIM, SAPK-interacting protein 1 (Sin1), middle CRIM 
domain.  CRIM is a domain in the middle of Sin1 that is important 
in the substrate recognition of TORC2. It is conserved 
from yeast to humans. TOR is a serine/threonine-specific 
protein kinase and forms functionally distinct protein complexes 
referred to as TORC1 and TORC2.
Length=137

 Score = 178 bits (453),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 71/153 (46%), Positives = 92/153 (60%), Gaps = 29/153 (19%)

Query  199  TSLLTQALKARMKAPTNPVEKFAVLSGKGLA-DALNIKLYLPFSSDPEEPLDLQLARESK  257
             SLL+  LKA+ K+P+NP+E +A LSGKG   + L IK+Y PFS+ P +P ++++ +   
Sbjct  1    KSLLSALLKAKKKSPSNPLEYYAFLSGKGEPSNPLKIKIYFPFSTSPSKPFEVKVRK---  57

Query  258  LADQPAPVTVAEAIGLALWRYSEEGREPAIERNKLNVNRWTLRMV-EDGEVEYDFPPLSR  316
                    TVAE IGL LWRYSEE REP ++  KLN NRWTLR+V EDGEV+ DFP L R
Sbjct  58   ------DATVAEVIGLILWRYSEEKREPPLDEEKLNPNRWTLRIVEEDGEVDEDFPALDR  111

Query  317  ASHIADFTSNNNNRATGVRGRSRGKQYDEFALV  349
               I+ F                   +DEFALV
Sbjct  112  TRPISKFG------------------FDEFALV  126


>CDD:465327 pfam16979, SIN1_PH, SAPK-interacting protein 1 (Sin1), Pleckstrin-homology. 
 SIN1_PH is a pleckstrin-homology domain found 
at the C-terminus of SIN1. It is conserved from yeast to humans. 
PH-domains are involved in intracellular signalling or 
as constituents of the cytoskeleton. SIN1 (SAPK-interacting 
protein 1) plays an essential role in signal transduction, 
anf the PH domain is involved in lipid and membrane binding.
Length=104

 Score = 158 bits (402),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 51/107 (48%), Positives = 65/107 (61%), Gaps = 4/107 (4%)

Query  569  YYRRYHVFRKQSMSFTTSNHRILTFDNDYMHIMPGDTGKA-ASDTKTRSISFNDVVGCKV  627
             Y++Y V+RKQ MS    + R L  D DY+HIMP +  K  +   KT S   + VVGCK 
Sbjct  1    AYKKYTVWRKQKMSRA-KHERTLAIDGDYIHIMPSENKKFWSESGKTTSYHISSVVGCKQ  59

Query  628  SRRHPKNFRVVVLRGNDANEQKRYDFEARNALEAVEIVDEIKKNMAH  674
            S R P NF++VV R  D+ E KRYDFEA +  EA EIV +IKK +  
Sbjct  60   SERKPSNFKIVVYR--DSREFKRYDFEADSPKEAAEIVQKIKKILEM  104



Lambda      K        H        a         alpha
   0.312    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 861277360


Query= TCONS_00012316

Length=677
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465326 pfam16978, CRIM, SAPK-interacting protein 1 (Sin1), mi...  178     2e-53
CDD:465327 pfam16979, SIN1_PH, SAPK-interacting protein 1 (Sin1),...  158     1e-46


>CDD:465326 pfam16978, CRIM, SAPK-interacting protein 1 (Sin1), middle CRIM 
domain.  CRIM is a domain in the middle of Sin1 that is important 
in the substrate recognition of TORC2. It is conserved 
from yeast to humans. TOR is a serine/threonine-specific 
protein kinase and forms functionally distinct protein complexes 
referred to as TORC1 and TORC2.
Length=137

 Score = 178 bits (453),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 71/153 (46%), Positives = 92/153 (60%), Gaps = 29/153 (19%)

Query  199  TSLLTQALKARMKAPTNPVEKFAVLSGKGLA-DALNIKLYLPFSSDPEEPLDLQLARESK  257
             SLL+  LKA+ K+P+NP+E +A LSGKG   + L IK+Y PFS+ P +P ++++ +   
Sbjct  1    KSLLSALLKAKKKSPSNPLEYYAFLSGKGEPSNPLKIKIYFPFSTSPSKPFEVKVRK---  57

Query  258  LADQPAPVTVAEAIGLALWRYSEEGREPAIERNKLNVNRWTLRMV-EDGEVEYDFPPLSR  316
                    TVAE IGL LWRYSEE REP ++  KLN NRWTLR+V EDGEV+ DFP L R
Sbjct  58   ------DATVAEVIGLILWRYSEEKREPPLDEEKLNPNRWTLRIVEEDGEVDEDFPALDR  111

Query  317  ASHIADFTSNNNNRATGVRGRSRGKQYDEFALV  349
               I+ F                   +DEFALV
Sbjct  112  TRPISKFG------------------FDEFALV  126


>CDD:465327 pfam16979, SIN1_PH, SAPK-interacting protein 1 (Sin1), Pleckstrin-homology. 
 SIN1_PH is a pleckstrin-homology domain found 
at the C-terminus of SIN1. It is conserved from yeast to humans. 
PH-domains are involved in intracellular signalling or 
as constituents of the cytoskeleton. SIN1 (SAPK-interacting 
protein 1) plays an essential role in signal transduction, 
anf the PH domain is involved in lipid and membrane binding.
Length=104

 Score = 158 bits (402),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 51/107 (48%), Positives = 65/107 (61%), Gaps = 4/107 (4%)

Query  569  YYRRYHVFRKQSMSFTTSNHRILTFDNDYMHIMPGDTGKA-ASDTKTRSISFNDVVGCKV  627
             Y++Y V+RKQ MS    + R L  D DY+HIMP +  K  +   KT S   + VVGCK 
Sbjct  1    AYKKYTVWRKQKMSRA-KHERTLAIDGDYIHIMPSENKKFWSESGKTTSYHISSVVGCKQ  59

Query  628  SRRHPKNFRVVVLRGNDANEQKRYDFEARNALEAVEIVDEIKKNMAH  674
            S R P NF++VV R  D+ E KRYDFEA +  EA EIV +IKK +  
Sbjct  60   SERKPSNFKIVVYR--DSREFKRYDFEADSPKEAAEIVQKIKKILEM  104



Lambda      K        H        a         alpha
   0.312    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 861277360


Query= TCONS_00012323

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      150     6e-47


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 150 bits (381),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 57/133 (43%), Positives = 78/133 (59%), Gaps = 2/133 (2%)

Query  54   MERSKSPKGRPHVPTGGSSRGTTVVWGDYGLRMKDHDRRLPAASLKLAEETIKRRLRGM-  112
             +R+K  K R     G  ++GTT+ +GDYGL   +   ++ A  L+ A   I R L+   
Sbjct  1    PKRTKYRKSRKRYIRGVPTKGTTLDFGDYGLVALEG-GQITARQLEAARIAINRYLKKTR  59

Query  113  NYTLYKRVSANIGVYTKGNEQRMGKGKGKFDYWTARVAVSRIVFELKGDLHEKIAREAFR  172
               L+ RV  +  V  K  E RMGKGKGK + W ARV   RI+FE+KG +HE++A+EA R
Sbjct  60   GGKLWIRVFPDKPVTKKPGEDRMGKGKGKPEGWVARVKPGRILFEIKGGVHEEVAKEALR  119

Query  173  LAGHKLPGLWEFV  185
            LA HKLPG  + V
Sbjct  120  LAAHKLPGKTKIV  132



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00018233

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      144     2e-45


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 144 bits (367),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 57/130 (44%), Positives = 77/130 (59%), Gaps = 2/130 (2%)

Query  54   MERSKSPKGRPHVPTGGSSRGTTVVWGDYGLRMKDHDRRLPAASLKLAEETIKRRLRGM-  112
             +R+K  K R     G  ++GTT+ +GDYGL   +   ++ A  L+ A   I R L+   
Sbjct  1    PKRTKYRKSRKRYIRGVPTKGTTLDFGDYGLVALEG-GQITARQLEAARIAINRYLKKTR  59

Query  113  NYTLYKRVSANIGVYTKGNEQRMGKGKGKFDYWTARVAVSRIVFELKGDLHEKIAREAFR  172
               L+ RV  +  V  K  E RMGKGKGK + W ARV   RI+FE+KG +HE++A+EA R
Sbjct  60   GGKLWIRVFPDKPVTKKPGEDRMGKGKGKPEGWVARVKPGRILFEIKGGVHEEVAKEALR  119

Query  173  LAGHKLPGKV  182
            LA HKLPGK 
Sbjct  120  LAAHKLPGKT  129



Lambda      K        H        a         alpha
   0.321    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00018232

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      144     2e-45


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 144 bits (367),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 57/130 (44%), Positives = 77/130 (59%), Gaps = 2/130 (2%)

Query  54   MERSKSPKGRPHVPTGGSSRGTTVVWGDYGLRMKDHDRRLPAASLKLAEETIKRRLRGM-  112
             +R+K  K R     G  ++GTT+ +GDYGL   +   ++ A  L+ A   I R L+   
Sbjct  1    PKRTKYRKSRKRYIRGVPTKGTTLDFGDYGLVALEG-GQITARQLEAARIAINRYLKKTR  59

Query  113  NYTLYKRVSANIGVYTKGNEQRMGKGKGKFDYWTARVAVSRIVFELKGDLHEKIAREAFR  172
               L+ RV  +  V  K  E RMGKGKGK + W ARV   RI+FE+KG +HE++A+EA R
Sbjct  60   GGKLWIRVFPDKPVTKKPGEDRMGKGKGKPEGWVARVKPGRILFEIKGGVHEEVAKEALR  119

Query  173  LAGHKLPGKV  182
            LA HKLPGK 
Sbjct  120  LAAHKLPGKT  129



Lambda      K        H        a         alpha
   0.321    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00018234

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      144     2e-45


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 144 bits (367),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 57/130 (44%), Positives = 77/130 (59%), Gaps = 2/130 (2%)

Query  54   MERSKSPKGRPHVPTGGSSRGTTVVWGDYGLRMKDHDRRLPAASLKLAEETIKRRLRGM-  112
             +R+K  K R     G  ++GTT+ +GDYGL   +   ++ A  L+ A   I R L+   
Sbjct  1    PKRTKYRKSRKRYIRGVPTKGTTLDFGDYGLVALEG-GQITARQLEAARIAINRYLKKTR  59

Query  113  NYTLYKRVSANIGVYTKGNEQRMGKGKGKFDYWTARVAVSRIVFELKGDLHEKIAREAFR  172
               L+ RV  +  V  K  E RMGKGKGK + W ARV   RI+FE+KG +HE++A+EA R
Sbjct  60   GGKLWIRVFPDKPVTKKPGEDRMGKGKGKPEGWVARVKPGRILFEIKGGVHEEVAKEALR  119

Query  173  LAGHKLPGKV  182
            LA HKLPGK 
Sbjct  120  LAAHKLPGKT  129



Lambda      K        H        a         alpha
   0.321    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00018235

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      150     6e-47


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 150 bits (381),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 57/133 (43%), Positives = 78/133 (59%), Gaps = 2/133 (2%)

Query  54   MERSKSPKGRPHVPTGGSSRGTTVVWGDYGLRMKDHDRRLPAASLKLAEETIKRRLRGM-  112
             +R+K  K R     G  ++GTT+ +GDYGL   +   ++ A  L+ A   I R L+   
Sbjct  1    PKRTKYRKSRKRYIRGVPTKGTTLDFGDYGLVALEG-GQITARQLEAARIAINRYLKKTR  59

Query  113  NYTLYKRVSANIGVYTKGNEQRMGKGKGKFDYWTARVAVSRIVFELKGDLHEKIAREAFR  172
               L+ RV  +  V  K  E RMGKGKGK + W ARV   RI+FE+KG +HE++A+EA R
Sbjct  60   GGKLWIRVFPDKPVTKKPGEDRMGKGKGKPEGWVARVKPGRILFEIKGGVHEEVAKEALR  119

Query  173  LAGHKLPGLWEFV  185
            LA HKLPG  + V
Sbjct  120  LAAHKLPGKTKIV  132



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00018236

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      144     2e-45


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 144 bits (367),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 57/130 (44%), Positives = 77/130 (59%), Gaps = 2/130 (2%)

Query  54   MERSKSPKGRPHVPTGGSSRGTTVVWGDYGLRMKDHDRRLPAASLKLAEETIKRRLRGM-  112
             +R+K  K R     G  ++GTT+ +GDYGL   +   ++ A  L+ A   I R L+   
Sbjct  1    PKRTKYRKSRKRYIRGVPTKGTTLDFGDYGLVALEG-GQITARQLEAARIAINRYLKKTR  59

Query  113  NYTLYKRVSANIGVYTKGNEQRMGKGKGKFDYWTARVAVSRIVFELKGDLHEKIAREAFR  172
               L+ RV  +  V  K  E RMGKGKGK + W ARV   RI+FE+KG +HE++A+EA R
Sbjct  60   GGKLWIRVFPDKPVTKKPGEDRMGKGKGKPEGWVARVKPGRILFEIKGGVHEEVAKEALR  119

Query  173  LAGHKLPGKV  182
            LA HKLPGK 
Sbjct  120  LAAHKLPGKT  129



Lambda      K        H        a         alpha
   0.321    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00018238

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      150     6e-47


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 150 bits (381),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 57/133 (43%), Positives = 78/133 (59%), Gaps = 2/133 (2%)

Query  54   MERSKSPKGRPHVPTGGSSRGTTVVWGDYGLRMKDHDRRLPAASLKLAEETIKRRLRGM-  112
             +R+K  K R     G  ++GTT+ +GDYGL   +   ++ A  L+ A   I R L+   
Sbjct  1    PKRTKYRKSRKRYIRGVPTKGTTLDFGDYGLVALEG-GQITARQLEAARIAINRYLKKTR  59

Query  113  NYTLYKRVSANIGVYTKGNEQRMGKGKGKFDYWTARVAVSRIVFELKGDLHEKIAREAFR  172
               L+ RV  +  V  K  E RMGKGKGK + W ARV   RI+FE+KG +HE++A+EA R
Sbjct  60   GGKLWIRVFPDKPVTKKPGEDRMGKGKGKPEGWVARVKPGRILFEIKGGVHEEVAKEALR  119

Query  173  LAGHKLPGLWEFV  185
            LA HKLPG  + V
Sbjct  120  LAAHKLPGKTKIV  132



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00018237

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      150     6e-47


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 150 bits (381),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 57/133 (43%), Positives = 78/133 (59%), Gaps = 2/133 (2%)

Query  54   MERSKSPKGRPHVPTGGSSRGTTVVWGDYGLRMKDHDRRLPAASLKLAEETIKRRLRGM-  112
             +R+K  K R     G  ++GTT+ +GDYGL   +   ++ A  L+ A   I R L+   
Sbjct  1    PKRTKYRKSRKRYIRGVPTKGTTLDFGDYGLVALEG-GQITARQLEAARIAINRYLKKTR  59

Query  113  NYTLYKRVSANIGVYTKGNEQRMGKGKGKFDYWTARVAVSRIVFELKGDLHEKIAREAFR  172
               L+ RV  +  V  K  E RMGKGKGK + W ARV   RI+FE+KG +HE++A+EA R
Sbjct  60   GGKLWIRVFPDKPVTKKPGEDRMGKGKGKPEGWVARVKPGRILFEIKGGVHEEVAKEALR  119

Query  173  LAGHKLPGLWEFV  185
            LA HKLPG  + V
Sbjct  120  LAAHKLPGKTKIV  132



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00012319

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      150     6e-47


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 150 bits (381),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 57/133 (43%), Positives = 78/133 (59%), Gaps = 2/133 (2%)

Query  54   MERSKSPKGRPHVPTGGSSRGTTVVWGDYGLRMKDHDRRLPAASLKLAEETIKRRLRGM-  112
             +R+K  K R     G  ++GTT+ +GDYGL   +   ++ A  L+ A   I R L+   
Sbjct  1    PKRTKYRKSRKRYIRGVPTKGTTLDFGDYGLVALEG-GQITARQLEAARIAINRYLKKTR  59

Query  113  NYTLYKRVSANIGVYTKGNEQRMGKGKGKFDYWTARVAVSRIVFELKGDLHEKIAREAFR  172
               L+ RV  +  V  K  E RMGKGKGK + W ARV   RI+FE+KG +HE++A+EA R
Sbjct  60   GGKLWIRVFPDKPVTKKPGEDRMGKGKGKPEGWVARVKPGRILFEIKGGVHEEVAKEALR  119

Query  173  LAGHKLPGLWEFV  185
            LA HKLPG  + V
Sbjct  120  LAAHKLPGKTKIV  132



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00012320

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      144     2e-45


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 144 bits (367),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 57/130 (44%), Positives = 77/130 (59%), Gaps = 2/130 (2%)

Query  54   MERSKSPKGRPHVPTGGSSRGTTVVWGDYGLRMKDHDRRLPAASLKLAEETIKRRLRGM-  112
             +R+K  K R     G  ++GTT+ +GDYGL   +   ++ A  L+ A   I R L+   
Sbjct  1    PKRTKYRKSRKRYIRGVPTKGTTLDFGDYGLVALEG-GQITARQLEAARIAINRYLKKTR  59

Query  113  NYTLYKRVSANIGVYTKGNEQRMGKGKGKFDYWTARVAVSRIVFELKGDLHEKIAREAFR  172
               L+ RV  +  V  K  E RMGKGKGK + W ARV   RI+FE+KG +HE++A+EA R
Sbjct  60   GGKLWIRVFPDKPVTKKPGEDRMGKGKGKPEGWVARVKPGRILFEIKGGVHEEVAKEALR  119

Query  173  LAGHKLPGKV  182
            LA HKLPGK 
Sbjct  120  LAAHKLPGKT  129



Lambda      K        H        a         alpha
   0.321    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00012321

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      150     6e-47


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 150 bits (381),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 57/133 (43%), Positives = 78/133 (59%), Gaps = 2/133 (2%)

Query  54   MERSKSPKGRPHVPTGGSSRGTTVVWGDYGLRMKDHDRRLPAASLKLAEETIKRRLRGM-  112
             +R+K  K R     G  ++GTT+ +GDYGL   +   ++ A  L+ A   I R L+   
Sbjct  1    PKRTKYRKSRKRYIRGVPTKGTTLDFGDYGLVALEG-GQITARQLEAARIAINRYLKKTR  59

Query  113  NYTLYKRVSANIGVYTKGNEQRMGKGKGKFDYWTARVAVSRIVFELKGDLHEKIAREAFR  172
               L+ RV  +  V  K  E RMGKGKGK + W ARV   RI+FE+KG +HE++A+EA R
Sbjct  60   GGKLWIRVFPDKPVTKKPGEDRMGKGKGKPEGWVARVKPGRILFEIKGGVHEEVAKEALR  119

Query  173  LAGHKLPGLWEFV  185
            LA HKLPG  + V
Sbjct  120  LAAHKLPGKTKIV  132



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00012322

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      150     6e-47


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 150 bits (381),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 57/133 (43%), Positives = 78/133 (59%), Gaps = 2/133 (2%)

Query  54   MERSKSPKGRPHVPTGGSSRGTTVVWGDYGLRMKDHDRRLPAASLKLAEETIKRRLRGM-  112
             +R+K  K R     G  ++GTT+ +GDYGL   +   ++ A  L+ A   I R L+   
Sbjct  1    PKRTKYRKSRKRYIRGVPTKGTTLDFGDYGLVALEG-GQITARQLEAARIAINRYLKKTR  59

Query  113  NYTLYKRVSANIGVYTKGNEQRMGKGKGKFDYWTARVAVSRIVFELKGDLHEKIAREAFR  172
               L+ RV  +  V  K  E RMGKGKGK + W ARV   RI+FE+KG +HE++A+EA R
Sbjct  60   GGKLWIRVFPDKPVTKKPGEDRMGKGKGKPEGWVARVKPGRILFEIKGGVHEEVAKEALR  119

Query  173  LAGHKLPGLWEFV  185
            LA HKLPG  + V
Sbjct  120  LAAHKLPGKTKIV  132



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00012317

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      150     6e-47


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 150 bits (381),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 57/133 (43%), Positives = 78/133 (59%), Gaps = 2/133 (2%)

Query  54   MERSKSPKGRPHVPTGGSSRGTTVVWGDYGLRMKDHDRRLPAASLKLAEETIKRRLRGM-  112
             +R+K  K R     G  ++GTT+ +GDYGL   +   ++ A  L+ A   I R L+   
Sbjct  1    PKRTKYRKSRKRYIRGVPTKGTTLDFGDYGLVALEG-GQITARQLEAARIAINRYLKKTR  59

Query  113  NYTLYKRVSANIGVYTKGNEQRMGKGKGKFDYWTARVAVSRIVFELKGDLHEKIAREAFR  172
               L+ RV  +  V  K  E RMGKGKGK + W ARV   RI+FE+KG +HE++A+EA R
Sbjct  60   GGKLWIRVFPDKPVTKKPGEDRMGKGKGKPEGWVARVKPGRILFEIKGGVHEEVAKEALR  119

Query  173  LAGHKLPGLWEFV  185
            LA HKLPG  + V
Sbjct  120  LAAHKLPGKTKIV  132



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00012324

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e      144     1e-45


>CDD:459733 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e.  
Length=132

 Score = 144 bits (367),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 57/133 (43%), Positives = 78/133 (59%), Gaps = 2/133 (2%)

Query  1    MERSKSPKGRPHVPTGGSSRGTTVVWGDYGLRMKDHDRRLPAASLKLAEETIKRRLRGM-  59
             +R+K  K R     G  ++GTT+ +GDYGL   +   ++ A  L+ A   I R L+   
Sbjct  1    PKRTKYRKSRKRYIRGVPTKGTTLDFGDYGLVALEG-GQITARQLEAARIAINRYLKKTR  59

Query  60   NYTLYKRVSANIGVYTKGNEQRMGKGKGKFDYWTARVAVSRIVFELKGDLHEKIAREAFR  119
               L+ RV  +  V  K  E RMGKGKGK + W ARV   RI+FE+KG +HE++A+EA R
Sbjct  60   GGKLWIRVFPDKPVTKKPGEDRMGKGKGKPEGWVARVKPGRILFEIKGGVHEEVAKEALR  119

Query  120  LAGHKLPGLWEFV  132
            LA HKLPG  + V
Sbjct  120  LAAHKLPGKTKIV  132



Lambda      K        H        a         alpha
   0.314    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00012325

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369159 pfam06985, HET, Heterokaryon incompatibility protein (...  87.8    1e-22


>CDD:369159 pfam06985, HET, Heterokaryon incompatibility protein (HET).  
This family represents a conserved region approximately 150 
residues long within various heterokaryon incompatibility proteins 
that seem to be restricted to ascomycete fungi. Genetic 
differences in specific het genes prevent a viable heterokaryotic 
fungal cell from being formed by the fusion of filaments 
from two different wild-type strains. Many family members 
also contain the pfam00400 repeat and the pfam05729 domain.
Length=146

 Score = 87.8 bits (218),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 46/145 (32%), Positives = 65/145 (45%), Gaps = 15/145 (10%)

Query  93   YVILSYCSGDFEPSSQRESGNTGFSAPLDGP--SLPKTLADAIEIARKLGYQYLWTRTLC  150
            YV LSY  GD E  +   +     S P++G    LP+TL DA+ + R+LGY+YLW   LC
Sbjct  1    YVALSYVWGDPESLTSLRTQ----SIPINGRTLPLPRTLEDALRVLRRLGYRYLWIDALC  56

Query  151  ---TSREEWGSDPARIAALYGQAALMLSAEAAKDPDSGIFHDRRVFYSPALGRNKDKYLR  207
                  +E       +  +Y  AAL++ A   +D DSG+   R +     L    D  + 
Sbjct  57   INQDDDKEKNQQVQLMGDIYSNAALVIVALGGEDADSGLPAVRSLRRLAQLSVRVDDRIS  116

Query  208  QQLL------RWTTDIEESATAGRG  226
              L       R   D+ ES    RG
Sbjct  117  SDLSLLLRSWRALEDLLESPWFTRG  141



Lambda      K        H        a         alpha
   0.318    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00012326

Length=447


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00012327

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432970 pfam13094, CENP-Q, CENP-Q, a CENPA-CAD centromere comp...  146     3e-46


>CDD:432970 pfam13094, CENP-Q, CENP-Q, a CENPA-CAD centromere complex subunit. 
 CENP-Q is one of the components that assembles onto the 
CENPA-nucleosome distal (CAD) centromere. The centromere, 
which is the basic element of chromosome inheritance, is epigenetically 
determined in mammals. CENP-A, the centromere-specific 
histone H3 variant, assembles an array of nucleosomes 
and it is this that seems to be the prime candidate for specifying 
centromere identity. CENPA nucleosomes directly recruit 
a proximal CENPA-nucleosome-associated complex (NAC) comprised 
of CENP-M, CENP-N and CENP-T, CENP-U(50), CENP-C and 
CENP-H. Assembly of the CENPA NAC at centromeres is dependent 
on CENP-M, CENP-N and CENP-T. Additionally, there are seven 
other subunits which make up the CENPA-nucleosome distal 
(CAD) centromere, CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R 
and CENP-S, also assembling on the CENP-A NAC. Fta7 is 
the equivalent component of the fission yeast Sim4 complex.
Length=159

 Score = 146 bits (371),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 62/153 (41%), Positives = 93/153 (61%), Gaps = 2/153 (1%)

Query  1    MPFPPVTKESVFDYEAALNEHVSLESSLATMNDSIDLLKAEIEREEALLAKETKQLQEME  60
            +PFPP  KE V D+E  L+ + +LE+ L+    S++LL+ EIE+EEALL  + + L+E+E
Sbjct  8    LPFPPGGKEKVLDFEKLLDRNKALEAQLSAELHSLELLEEEIEKEEALLESDEEYLEELE  67

Query  61   KNANRAEAERKRQMKNEHPALRQLDDLPKTQFQAAHFRILEAEDSQSGFDELENDPETSS  120
            KNA     ERK ++K EHP L++ D    +  + +    L   D+     +   D E   
Sbjct  68   KNAKAEARERKEKLKKEHPLLQEDDSGVLSLPELSS--DLGLGDTDFSLFDPTLDEELLP  125

Query  121  LLKQLKDHLKSMQNNVAPLTGLKDALTRSEAAL  153
            LL+QL+ HL+SMQ N+A L GL +A+ R+ AAL
Sbjct  126  LLEQLQKHLESMQGNLAQLEGLNEAIERAYAAL  158



Lambda      K        H        a         alpha
   0.308    0.124    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00012328

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432970 pfam13094, CENP-Q, CENP-Q, a CENPA-CAD centromere comp...  157     6e-49


>CDD:432970 pfam13094, CENP-Q, CENP-Q, a CENPA-CAD centromere complex subunit. 
 CENP-Q is one of the components that assembles onto the 
CENPA-nucleosome distal (CAD) centromere. The centromere, 
which is the basic element of chromosome inheritance, is epigenetically 
determined in mammals. CENP-A, the centromere-specific 
histone H3 variant, assembles an array of nucleosomes 
and it is this that seems to be the prime candidate for specifying 
centromere identity. CENPA nucleosomes directly recruit 
a proximal CENPA-nucleosome-associated complex (NAC) comprised 
of CENP-M, CENP-N and CENP-T, CENP-U(50), CENP-C and 
CENP-H. Assembly of the CENPA NAC at centromeres is dependent 
on CENP-M, CENP-N and CENP-T. Additionally, there are seven 
other subunits which make up the CENPA-nucleosome distal 
(CAD) centromere, CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R 
and CENP-S, also assembling on the CENP-A NAC. Fta7 is 
the equivalent component of the fission yeast Sim4 complex.
Length=159

 Score = 157 bits (400),  Expect = 6e-49, Method: Composition-based stats.
 Identities = 67/178 (38%), Positives = 99/178 (56%), Gaps = 20/178 (11%)

Query  88   LGKRLPRMPFPPVTKESVFDYEAALNEHVSLESSLATMNDSIDLLKAEIEREEALLAKET  147
            L +RL R+PFPP  KE V D+E  L+ + +LE+ L+    S++LL+ EIE+EEALL  + 
Sbjct  1    LLRRLARLPFPPGGKEKVLDFEKLLDRNKALEAQLSAELHSLELLEEEIEKEEALLESDE  60

Query  148  KQLQEMEKNANRAEAERKRQMKNVSSLGWFRPYNMSLIILKEHPALRQLDDLPKTQFQAA  207
            + L+E+EKNA     ERK ++K                  KEHP L++ D    +  + +
Sbjct  61   EYLEELEKNAKAEARERKEKLK------------------KEHPLLQEDDSGVLSLPELS  102

Query  208  HFRILEAEDSQSGFDELENDPETSSLLKQLKDHLKSMQNNVAPLTGLKDALTRSEAAL  265
                L   D+     +   D E   LL+QL+ HL+SMQ N+A L GL +A+ R+ AAL
Sbjct  103  S--DLGLGDTDFSLFDPTLDEELLPLLEQLQKHLESMQGNLAQLEGLNEAIERAYAAL  158



Lambda      K        H        a         alpha
   0.313    0.128    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00018239

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.145    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00012329

Length=256
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432970 pfam13094, CENP-Q, CENP-Q, a CENPA-CAD centromere comp...  163     1e-51


>CDD:432970 pfam13094, CENP-Q, CENP-Q, a CENPA-CAD centromere complex subunit. 
 CENP-Q is one of the components that assembles onto the 
CENPA-nucleosome distal (CAD) centromere. The centromere, 
which is the basic element of chromosome inheritance, is epigenetically 
determined in mammals. CENP-A, the centromere-specific 
histone H3 variant, assembles an array of nucleosomes 
and it is this that seems to be the prime candidate for specifying 
centromere identity. CENPA nucleosomes directly recruit 
a proximal CENPA-nucleosome-associated complex (NAC) comprised 
of CENP-M, CENP-N and CENP-T, CENP-U(50), CENP-C and 
CENP-H. Assembly of the CENPA NAC at centromeres is dependent 
on CENP-M, CENP-N and CENP-T. Additionally, there are seven 
other subunits which make up the CENPA-nucleosome distal 
(CAD) centromere, CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R 
and CENP-S, also assembling on the CENP-A NAC. Fta7 is 
the equivalent component of the fission yeast Sim4 complex.
Length=159

 Score = 163 bits (416),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 66/160 (41%), Positives = 98/160 (61%), Gaps = 2/160 (1%)

Query  88   LGKRLPRMPFPPVTKESVFDYEAALNEHVSLESSLATMNDSIDLLKAEIEREEALLAKET  147
            L +RL R+PFPP  KE V D+E  L+ + +LE+ L+    S++LL+ EIE+EEALL  + 
Sbjct  1    LLRRLARLPFPPGGKEKVLDFEKLLDRNKALEAQLSAELHSLELLEEEIEKEEALLESDE  60

Query  148  KQLQEMEKNANRAEAERKRQMKNEHPALRQLDDLPKTQFQAAHFRILEAEDSQSGFDELE  207
            + L+E+EKNA     ERK ++K EHP L++ D    +  + +    L   D+     +  
Sbjct  61   EYLEELEKNAKAEARERKEKLKKEHPLLQEDDSGVLSLPELSS--DLGLGDTDFSLFDPT  118

Query  208  NDPETSSLLKQLKDHLKSMQNNVAPLTGLKDALTRSEAAL  247
             D E   LL+QL+ HL+SMQ N+A L GL +A+ R+ AAL
Sbjct  119  LDEELLPLLEQLQKHLESMQGNLAQLEGLNEAIERAYAAL  158



Lambda      K        H        a         alpha
   0.312    0.126    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00012330

Length=224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432970 pfam13094, CENP-Q, CENP-Q, a CENPA-CAD centromere comp...  110     4e-31


>CDD:432970 pfam13094, CENP-Q, CENP-Q, a CENPA-CAD centromere complex subunit. 
 CENP-Q is one of the components that assembles onto the 
CENPA-nucleosome distal (CAD) centromere. The centromere, 
which is the basic element of chromosome inheritance, is epigenetically 
determined in mammals. CENP-A, the centromere-specific 
histone H3 variant, assembles an array of nucleosomes 
and it is this that seems to be the prime candidate for specifying 
centromere identity. CENPA nucleosomes directly recruit 
a proximal CENPA-nucleosome-associated complex (NAC) comprised 
of CENP-M, CENP-N and CENP-T, CENP-U(50), CENP-C and 
CENP-H. Assembly of the CENPA NAC at centromeres is dependent 
on CENP-M, CENP-N and CENP-T. Additionally, there are seven 
other subunits which make up the CENPA-nucleosome distal 
(CAD) centromere, CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R 
and CENP-S, also assembling on the CENP-A NAC. Fta7 is 
the equivalent component of the fission yeast Sim4 complex.
Length=159

 Score = 110 bits (277),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 44/118 (37%), Positives = 66/118 (56%), Gaps = 18/118 (15%)

Query  88   LGKRLPRMPFPPVTKESVFDYEAALNEHVSLESSLATMNDSIDLLKAEIEREEALLAKET  147
            L +RL R+PFPP  KE V D+E  L+ + +LE+ L+    S++LL+ EIE+EEALL  + 
Sbjct  1    LLRRLARLPFPPGGKEKVLDFEKLLDRNKALEAQLSAELHSLELLEEEIEKEEALLESDE  60

Query  148  KQLQEMEKNANRAEAERKRQMKNVSSLGWFRPYNMSLIILKEHPALRQLDDLPKTQFQ  205
            + L+E+EKNA     ERK ++K                  KEHP L++ D    +  +
Sbjct  61   EYLEELEKNAKAEARERKEKLK------------------KEHPLLQEDDSGVLSLPE  100



Lambda      K        H        a         alpha
   0.315    0.129    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00012331

Length=643


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 811134500


Query= TCONS_00012332

Length=316


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00018240

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432970 pfam13094, CENP-Q, CENP-Q, a CENPA-CAD centromere comp...  158     2e-50


>CDD:432970 pfam13094, CENP-Q, CENP-Q, a CENPA-CAD centromere complex subunit. 
 CENP-Q is one of the components that assembles onto the 
CENPA-nucleosome distal (CAD) centromere. The centromere, 
which is the basic element of chromosome inheritance, is epigenetically 
determined in mammals. CENP-A, the centromere-specific 
histone H3 variant, assembles an array of nucleosomes 
and it is this that seems to be the prime candidate for specifying 
centromere identity. CENPA nucleosomes directly recruit 
a proximal CENPA-nucleosome-associated complex (NAC) comprised 
of CENP-M, CENP-N and CENP-T, CENP-U(50), CENP-C and 
CENP-H. Assembly of the CENPA NAC at centromeres is dependent 
on CENP-M, CENP-N and CENP-T. Additionally, there are seven 
other subunits which make up the CENPA-nucleosome distal 
(CAD) centromere, CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R 
and CENP-S, also assembling on the CENP-A NAC. Fta7 is 
the equivalent component of the fission yeast Sim4 complex.
Length=159

 Score = 158 bits (402),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 66/160 (41%), Positives = 98/160 (61%), Gaps = 2/160 (1%)

Query  24   LGKRLPRMPFPPVTKESVFDYEAALNEHVSLESSLATMNDSIDLLKAEIEREEALLAKET  83
            L +RL R+PFPP  KE V D+E  L+ + +LE+ L+    S++LL+ EIE+EEALL  + 
Sbjct  1    LLRRLARLPFPPGGKEKVLDFEKLLDRNKALEAQLSAELHSLELLEEEIEKEEALLESDE  60

Query  84   KQLQEMEKNANRAEAERKRQMKNEHPALRQLDDLPKTQFQAAHFRILEAEDSQSGFDELE  143
            + L+E+EKNA     ERK ++K EHP L++ D    +  + +    L   D+     +  
Sbjct  61   EYLEELEKNAKAEARERKEKLKKEHPLLQEDDSGVLSLPELSS--DLGLGDTDFSLFDPT  118

Query  144  NDPETSSLLKQLKDHLKSMQNNVAPLTGLKDALTRSEAAL  183
             D E   LL+QL+ HL+SMQ N+A L GL +A+ R+ AAL
Sbjct  119  LDEELLPLLEQLQKHLESMQGNLAQLEGLNEAIERAYAAL  158



Lambda      K        H        a         alpha
   0.311    0.126    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00012333

Length=316


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00012335

Length=643


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 811134500


Query= TCONS_00018242

Length=316


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00018241

Length=316


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00012337

Length=439


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00018243

Length=643


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 811134500


Query= TCONS_00012339

Length=643


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 811134500


Query= TCONS_00012338

Length=439


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00012340

Length=455


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00018246

Length=316


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00018245

Length=316


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00018244

Length=316


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00018247

Length=316


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00018248

Length=455


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00012342

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00012343

Length=449


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 550599736


Query= TCONS_00012344

Length=449


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 550599736


Query= TCONS_00018250

Length=449


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 550599736


Query= TCONS_00018251

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428925 pfam06413, Neugrin, Neugrin. This family consists of s...  60.7    1e-11


>CDD:428925 pfam06413, Neugrin, Neugrin.  This family consists of several 
mouse and human neugrin proteins. Neugrin and m-neugrin are 
mainly expressed in neurons in the nervous system, and are 
thought to play an important role in the process of neuronal 
differentiation.
Length=218

 Score = 60.7 bits (147),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 37/51 (73%), Gaps = 0/51 (0%)

Query  182  PPKKLSPDALEGIRHLHAVAPDRFTTPVLAEQFQVSPEAIRRILKSKWRPS  232
            PP+ L+ +A+E IR+LH   P+ ++ P LAE F VS + IRR+LKSK+ P+
Sbjct  7    PPRTLTWEAMEQIRYLHEEFPESWSVPRLAEGFDVSTDVIRRVLKSKFVPT  57



Lambda      K        H        a         alpha
   0.311    0.125    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00018252

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00012346

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428925 pfam06413, Neugrin, Neugrin. This family consists of s...  60.7    1e-11


>CDD:428925 pfam06413, Neugrin, Neugrin.  This family consists of several 
mouse and human neugrin proteins. Neugrin and m-neugrin are 
mainly expressed in neurons in the nervous system, and are 
thought to play an important role in the process of neuronal 
differentiation.
Length=218

 Score = 60.7 bits (147),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 37/51 (73%), Gaps = 0/51 (0%)

Query  182  PPKKLSPDALEGIRHLHAVAPDRFTTPVLAEQFQVSPEAIRRILKSKWRPS  232
            PP+ L+ +A+E IR+LH   P+ ++ P LAE F VS + IRR+LKSK+ P+
Sbjct  7    PPRTLTWEAMEQIRYLHEEFPESWSVPRLAEGFDVSTDVIRRVLKSKFVPT  57



Lambda      K        H        a         alpha
   0.311    0.125    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00012347

Length=412
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430181 pfam08737, Rgp1, Rgp1. Rgp1 forms heterodimer with Ric...  263     6e-85


>CDD:430181 pfam08737, Rgp1, Rgp1.  Rgp1 forms heterodimer with Ric1 (pfam07064) 
which associates with Golgi membranes and functions 
as a guanyl-nucleotide exchange factor.
Length=414

 Score = 263 bits (674),  Expect = 6e-85, Method: Composition-based stats.
 Identities = 112/180 (62%), Positives = 131/180 (73%), Gaps = 12/180 (7%)

Query  222  TLLMGYAQVSASFTVDGSLINQAAFEEVKRKGVVGSQGNAAGTLGGGSASISDKSRKSGG  281
            TLLMGYAQ+S SFT+DGSLIN + FEEVKRKG         G  GGG   +  KS++  G
Sbjct  1    TLLMGYAQISGSFTLDGSLINLSPFEEVKRKG---------GGQGGGVVGLESKSKRISG  51

Query  282  FWGAFKWNAIEESISGLLSN-NELDGLRDMRGVTSSRSIPLLSTPQSLLFVDLRLAPGEE  340
               AF W  I ES+ GLL + NEL  L++MRG+ SS+SIPLLSTPQSLLFVDL LAPGE 
Sbjct  52   LLNAFGWGGIGESLGGLLGDGNELSTLKEMRGIASSKSIPLLSTPQSLLFVDLTLAPGES  111

Query  341  QSYSFSFTLPKGLPASHKGKAIKISYNLVIGTQRPSGSNEPQRVNRITIPFRVFSGVNSK  400
            +S+SFSF LPKGLP S+KGKAIKISYNLVIGTQRP G+   Q+V  + +PFRV   VNS 
Sbjct  112  KSFSFSFKLPKGLPPSYKGKAIKISYNLVIGTQRPGGAK--QQVKSVEVPFRVLPYVNSS  169



Lambda      K        H        a         alpha
   0.312    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 501729466


Query= TCONS_00012349

Length=831
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430181 pfam08737, Rgp1, Rgp1. Rgp1 forms heterodimer with Ric...  544     0.0  


>CDD:430181 pfam08737, Rgp1, Rgp1.  Rgp1 forms heterodimer with Ric1 (pfam07064) 
which associates with Golgi membranes and functions 
as a guanyl-nucleotide exchange factor.
Length=414

 Score = 544 bits (1405),  Expect = 0.0, Method: Composition-based stats.
 Identities = 226/431 (52%), Positives = 279/431 (65%), Gaps = 42/431 (10%)

Query  359  TLLMGYAQVSASFTVDGSLINQAAFEEVKRKGVVGSQGNAAGTLGGGSASISDKSRKSGG  418
            TLLMGYAQ+S SFT+DGSLIN + FEEVKRKG         G  GGG   +  KS++  G
Sbjct  1    TLLMGYAQISGSFTLDGSLINLSPFEEVKRKG---------GGQGGGVVGLESKSKRISG  51

Query  419  FWGAFKWNAIEESISGLLSN-NELDGLRDMRGVTSSRSIPLLSTPQSLLFVDLRLAPGEE  477
               AF W  I ES+ GLL + NEL  L++MRG+ SS+SIPLLSTPQSLLFVDL LAPGE 
Sbjct  52   LLNAFGWGGIGESLGGLLGDGNELSTLKEMRGIASSKSIPLLSTPQSLLFVDLTLAPGES  111

Query  478  QSYSFSFTLPKGLPASHKGKAIKISYNLVIGTQRPSGSNEPQRVNRITIPFRVFSGVNSQ  537
            +S+SFSF LPKGLP S+KGKAIKISYNLVIGTQRP G+   Q+V  + +PFRV   VNS 
Sbjct  112  KSFSFSFKLPKGLPPSYKGKAIKISYNLVIGTQRPGGAK--QQVKSVEVPFRVLPYVNSS  169

Query  538  GEILGHNLMSPYVILRDEARVQKVGSTS-------PPPVSKNKSISGHVWTSAPEFLSYV  590
            GE LGH+LMSPY++LRDEARV++V S             S +K  S    +S  +FL YV
Sbjct  170  GEQLGHDLMSPYILLRDEARVKEVKSRRNSSSSSKESKSSDSKKTSEKQESSKEDFLKYV  229

Query  591  DELLEQQSRKN----------LLQPPDLVSA-----RRSSSYEALAGPLSCKDAIDLAIL  635
            DELLE ++              +Q  +   +     RRSSS E    P S K+AIDL IL
Sbjct  230  DELLENENNSKDIDELLSPQLEVQFGEEEDSEENESRRSSSVEK---PSSVKEAIDLLIL  286

Query  636  RSNQAISKARSPNRFEIARNGRRIAVVVLNRPAHRLGETITATVNFTDVALPCYALRATL  695
            RS            +EIARNG+RIAV+ L++PA+RLGETI   ++F+D  +PCYA+ ATL
Sbjct  287  RSQL----QNLQKSYEIARNGKRIAVLTLSKPAYRLGETIDLVIDFSDARIPCYAVTATL  342

Query  696  ESFEKVASSLAVRSNASIHRATRRVHASFFENTLYST-RVVFSPAVPVSATPTIITTGVN  754
            ESFE +  SLA+RS ASI+R TR+VHA   E  L+   R+ F   +P SATP   T+G  
Sbjct  343  ESFELINPSLALRSEASINRVTRKVHAEHHEICLFDCDRIPFKLTIPSSATPQFKTSGFQ  402

Query  755  HEWELRFEFVT  765
             +W LR EFVT
Sbjct  403  LKWMLRLEFVT  413



Lambda      K        H        a         alpha
   0.313    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1056538304


Query= TCONS_00012350

Length=831
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430181 pfam08737, Rgp1, Rgp1. Rgp1 forms heterodimer with Ric...  544     0.0  


>CDD:430181 pfam08737, Rgp1, Rgp1.  Rgp1 forms heterodimer with Ric1 (pfam07064) 
which associates with Golgi membranes and functions 
as a guanyl-nucleotide exchange factor.
Length=414

 Score = 544 bits (1405),  Expect = 0.0, Method: Composition-based stats.
 Identities = 226/431 (52%), Positives = 279/431 (65%), Gaps = 42/431 (10%)

Query  359  TLLMGYAQVSASFTVDGSLINQAAFEEVKRKGVVGSQGNAAGTLGGGSASISDKSRKSGG  418
            TLLMGYAQ+S SFT+DGSLIN + FEEVKRKG         G  GGG   +  KS++  G
Sbjct  1    TLLMGYAQISGSFTLDGSLINLSPFEEVKRKG---------GGQGGGVVGLESKSKRISG  51

Query  419  FWGAFKWNAIEESISGLLSN-NELDGLRDMRGVTSSRSIPLLSTPQSLLFVDLRLAPGEE  477
               AF W  I ES+ GLL + NEL  L++MRG+ SS+SIPLLSTPQSLLFVDL LAPGE 
Sbjct  52   LLNAFGWGGIGESLGGLLGDGNELSTLKEMRGIASSKSIPLLSTPQSLLFVDLTLAPGES  111

Query  478  QSYSFSFTLPKGLPASHKGKAIKISYNLVIGTQRPSGSNEPQRVNRITIPFRVFSGVNSQ  537
            +S+SFSF LPKGLP S+KGKAIKISYNLVIGTQRP G+   Q+V  + +PFRV   VNS 
Sbjct  112  KSFSFSFKLPKGLPPSYKGKAIKISYNLVIGTQRPGGAK--QQVKSVEVPFRVLPYVNSS  169

Query  538  GEILGHNLMSPYVILRDEARVQKVGSTS-------PPPVSKNKSISGHVWTSAPEFLSYV  590
            GE LGH+LMSPY++LRDEARV++V S             S +K  S    +S  +FL YV
Sbjct  170  GEQLGHDLMSPYILLRDEARVKEVKSRRNSSSSSKESKSSDSKKTSEKQESSKEDFLKYV  229

Query  591  DELLEQQSRKN----------LLQPPDLVSA-----RRSSSYEALAGPLSCKDAIDLAIL  635
            DELLE ++              +Q  +   +     RRSSS E    P S K+AIDL IL
Sbjct  230  DELLENENNSKDIDELLSPQLEVQFGEEEDSEENESRRSSSVEK---PSSVKEAIDLLIL  286

Query  636  RSNQAISKARSPNRFEIARNGRRIAVVVLNRPAHRLGETITATVNFTDVALPCYALRATL  695
            RS            +EIARNG+RIAV+ L++PA+RLGETI   ++F+D  +PCYA+ ATL
Sbjct  287  RSQL----QNLQKSYEIARNGKRIAVLTLSKPAYRLGETIDLVIDFSDARIPCYAVTATL  342

Query  696  ESFEKVASSLAVRSNASIHRATRRVHASFFENTLYST-RVVFSPAVPVSATPTIITTGVN  754
            ESFE +  SLA+RS ASI+R TR+VHA   E  L+   R+ F   +P SATP   T+G  
Sbjct  343  ESFELINPSLALRSEASINRVTRKVHAEHHEICLFDCDRIPFKLTIPSSATPQFKTSGFQ  402

Query  755  HEWELRFEFVT  765
             +W LR EFVT
Sbjct  403  LKWMLRLEFVT  413



Lambda      K        H        a         alpha
   0.313    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1056538304


Query= TCONS_00012351

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00012352

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430181 pfam08737, Rgp1, Rgp1. Rgp1 forms heterodimer with Ric...  334     9e-112


>CDD:430181 pfam08737, Rgp1, Rgp1.  Rgp1 forms heterodimer with Ric1 (pfam07064) 
which associates with Golgi membranes and functions 
as a guanyl-nucleotide exchange factor.
Length=414

 Score = 334 bits (858),  Expect = 9e-112, Method: Composition-based stats.
 Identities = 144/249 (58%), Positives = 173/249 (69%), Gaps = 19/249 (8%)

Query  222  TLLMGYAQVSASFTVDGSLINQAAFEEVKRKGVVGSQGNAAGTLGGGSASISDKSRKSGG  281
            TLLMGYAQ+S SFT+DGSLIN + FEEVKRKG         G  GGG   +  KS++  G
Sbjct  1    TLLMGYAQISGSFTLDGSLINLSPFEEVKRKG---------GGQGGGVVGLESKSKRISG  51

Query  282  FWGAFKWNAIEESISGLLSN-NELDGLRDMRGVTSSRSIPLLSTPQSLLFVDLRLAPGEE  340
               AF W  I ES+ GLL + NEL  L++MRG+ SS+SIPLLSTPQSLLFVDL LAPGE 
Sbjct  52   LLNAFGWGGIGESLGGLLGDGNELSTLKEMRGIASSKSIPLLSTPQSLLFVDLTLAPGES  111

Query  341  QSYSFSFTLPKGLPASHKGKAIKISYNLVIGTQRPSGSNEPQRVNRITIPFRVFSGVNSQ  400
            +S+SFSF LPKGLP S+KGKAIKISYNLVIGTQRP G+   Q+V  + +PFRV   VNS 
Sbjct  112  KSFSFSFKLPKGLPPSYKGKAIKISYNLVIGTQRPGGAK--QQVKSVEVPFRVLPYVNSS  169

Query  401  GEILGHNLMSPYVILRDEARVQKVGSTS-------PPPVSKNKSISGHVWTSAPEFLSYV  453
            GE LGH+LMSPY++LRDEARV++V S             S +K  S    +S  +FL YV
Sbjct  170  GEQLGHDLMSPYILLRDEARVKEVKSRRNSSSSSKESKSSDSKKTSEKQESSKEDFLKYV  229

Query  454  DELLEQQSR  462
            DELLE ++ 
Sbjct  230  DELLENENN  238



Lambda      K        H        a         alpha
   0.312    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 570537888


Query= TCONS_00012353

Length=35
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family. Mob1 is ...  56.4    5e-13


>CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family.  Mob1 is an essential 
Saccharomyces cerevisiae protein, identified from a two-hybrid 
screen, that binds Mps1p, a protein kinase essential 
for spindle pole body duplication and mitotic checkpoint 
regulation. Mob1 contains no known structural motifs; however 
MOB1 is a member of a conserved gene family and shares sequence 
similarity with a nonessential yeast gene, MOB2. Mob1 
is a phosphoprotein in vivo and a substrate for the Mps1p kinase 
in vitro. Conditional alleles of MOB1 cause a late nuclear 
division arrest at restrictive temperature. This family 
also includes phocein, a rat protein that by yeast two hybrid 
interacts with striatin.
Length=171

 Score = 56.4 bits (137),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 28/29 (97%), Gaps = 0/29 (0%)

Query  1    MSAPEYIEHLMSWVQSNIDNEQMFPSRLG  29
            +SAP+YI++LM+W+QS +++E++FP+++G
Sbjct  76   LSAPQYIDYLMTWIQSQLNDEKIFPTKVG  104



Lambda      K        H        a         alpha
   0.318    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00012354

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family. Mob1 is ...  309     2e-109


>CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family.  Mob1 is an essential 
Saccharomyces cerevisiae protein, identified from a two-hybrid 
screen, that binds Mps1p, a protein kinase essential 
for spindle pole body duplication and mitotic checkpoint 
regulation. Mob1 contains no known structural motifs; however 
MOB1 is a member of a conserved gene family and shares sequence 
similarity with a nonessential yeast gene, MOB2. Mob1 
is a phosphoprotein in vivo and a substrate for the Mps1p kinase 
in vitro. Conditional alleles of MOB1 cause a late nuclear 
division arrest at restrictive temperature. This family 
also includes phocein, a rat protein that by yeast two hybrid 
interacts with striatin.
Length=171

 Score = 309 bits (793),  Expect = 2e-109, Method: Composition-based stats.
 Identities = 105/173 (61%), Positives = 143/173 (83%), Gaps = 2/173 (1%)

Query  35   EATLGSGSLRKAVKLPEGEDLNEWLAVNVVDFYNQINLLYGAITEFCSPQSCPEMKATDE  94
            +ATLGSG L+ AVKLP+GEDLNEWLAV+ VDF+N+INLLYG I+EFC+P++CP M A  +
Sbjct  1    KATLGSGDLKTAVKLPKGEDLNEWLAVHTVDFFNEINLLYGTISEFCTPETCPTMSAGPQ  60

Query  95   FEYLWQDSENFKRPTKMSAPEYIEHLMSWVQSNIDNEQMFPSRLGVPFPKAFSSLIRQIF  154
            +EYLW D   +K+PTK+SAP+YI++LM+W+QS +++E++FP+++GVPFPK F S++++IF
Sbjct  61   YEYLWAD-GKYKKPTKLSAPQYIDYLMTWIQSQLNDEKIFPTKVGVPFPKNFLSIVKKIF  119

Query  155  KRLYRVYAHIYCHHYPVVVHLGLEPHLNTSFKHYVLFVDEHRLATGKDYWGPL  207
            +RL+RVYAHIY HH+  +V LGLE HLNT FKH+VLFV E  L   K+   PL
Sbjct  120  RRLFRVYAHIYHHHFEEIVELGLEAHLNTCFKHFVLFVREFDLLDKKEL-EPL  171



Lambda      K        H        a         alpha
   0.321    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00018253

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family. Mob1 is ...  309     2e-109


>CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family.  Mob1 is an essential 
Saccharomyces cerevisiae protein, identified from a two-hybrid 
screen, that binds Mps1p, a protein kinase essential 
for spindle pole body duplication and mitotic checkpoint 
regulation. Mob1 contains no known structural motifs; however 
MOB1 is a member of a conserved gene family and shares sequence 
similarity with a nonessential yeast gene, MOB2. Mob1 
is a phosphoprotein in vivo and a substrate for the Mps1p kinase 
in vitro. Conditional alleles of MOB1 cause a late nuclear 
division arrest at restrictive temperature. This family 
also includes phocein, a rat protein that by yeast two hybrid 
interacts with striatin.
Length=171

 Score = 309 bits (794),  Expect = 2e-109, Method: Composition-based stats.
 Identities = 105/173 (61%), Positives = 143/173 (83%), Gaps = 2/173 (1%)

Query  35   EATLGSGSLRKAVKLPEGEDLNEWLAVNVVDFYNQINLLYGAITEFCSPQSCPEMKATDE  94
            +ATLGSG L+ AVKLP+GEDLNEWLAV+ VDF+N+INLLYG I+EFC+P++CP M A  +
Sbjct  1    KATLGSGDLKTAVKLPKGEDLNEWLAVHTVDFFNEINLLYGTISEFCTPETCPTMSAGPQ  60

Query  95   FEYLWQDSENFKRPTKMSAPEYIEHLMSWVQSNIDNEQMFPSRLGVPFPKAFSSLIRQIF  154
            +EYLW D   +K+PTK+SAP+YI++LM+W+QS +++E++FP+++GVPFPK F S++++IF
Sbjct  61   YEYLWAD-GKYKKPTKLSAPQYIDYLMTWIQSQLNDEKIFPTKVGVPFPKNFLSIVKKIF  119

Query  155  KRLYRVYAHIYCHHYPVVVHLGLEPHLNTSFKHYVLFVDEHRLATGKDYWGPL  207
            +RL+RVYAHIY HH+  +V LGLE HLNT FKH+VLFV E  L   K+   PL
Sbjct  120  RRLFRVYAHIYHHHFEEIVELGLEAHLNTCFKHFVLFVREFDLLDKKEL-EPL  171



Lambda      K        H        a         alpha
   0.321    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00012355

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family. Mob1 is ...  309     2e-109


>CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family.  Mob1 is an essential 
Saccharomyces cerevisiae protein, identified from a two-hybrid 
screen, that binds Mps1p, a protein kinase essential 
for spindle pole body duplication and mitotic checkpoint 
regulation. Mob1 contains no known structural motifs; however 
MOB1 is a member of a conserved gene family and shares sequence 
similarity with a nonessential yeast gene, MOB2. Mob1 
is a phosphoprotein in vivo and a substrate for the Mps1p kinase 
in vitro. Conditional alleles of MOB1 cause a late nuclear 
division arrest at restrictive temperature. This family 
also includes phocein, a rat protein that by yeast two hybrid 
interacts with striatin.
Length=171

 Score = 309 bits (794),  Expect = 2e-109, Method: Composition-based stats.
 Identities = 105/173 (61%), Positives = 143/173 (83%), Gaps = 2/173 (1%)

Query  35   EATLGSGSLRKAVKLPEGEDLNEWLAVNVVDFYNQINLLYGAITEFCSPQSCPEMKATDE  94
            +ATLGSG L+ AVKLP+GEDLNEWLAV+ VDF+N+INLLYG I+EFC+P++CP M A  +
Sbjct  1    KATLGSGDLKTAVKLPKGEDLNEWLAVHTVDFFNEINLLYGTISEFCTPETCPTMSAGPQ  60

Query  95   FEYLWQDSENFKRPTKMSAPEYIEHLMSWVQSNIDNEQMFPSRLGVPFPKAFSSLIRQIF  154
            +EYLW D   +K+PTK+SAP+YI++LM+W+QS +++E++FP+++GVPFPK F S++++IF
Sbjct  61   YEYLWAD-GKYKKPTKLSAPQYIDYLMTWIQSQLNDEKIFPTKVGVPFPKNFLSIVKKIF  119

Query  155  KRLYRVYAHIYCHHYPVVVHLGLEPHLNTSFKHYVLFVDEHRLATGKDYWGPL  207
            +RL+RVYAHIY HH+  +V LGLE HLNT FKH+VLFV E  L   K+   PL
Sbjct  120  RRLFRVYAHIYHHHFEEIVELGLEAHLNTCFKHFVLFVREFDLLDKKEL-EPL  171



Lambda      K        H        a         alpha
   0.321    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00012356

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family. Mob1 is ...  226     2e-76


>CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family.  Mob1 is an essential 
Saccharomyces cerevisiae protein, identified from a two-hybrid 
screen, that binds Mps1p, a protein kinase essential 
for spindle pole body duplication and mitotic checkpoint 
regulation. Mob1 contains no known structural motifs; however 
MOB1 is a member of a conserved gene family and shares sequence 
similarity with a nonessential yeast gene, MOB2. Mob1 
is a phosphoprotein in vivo and a substrate for the Mps1p kinase 
in vitro. Conditional alleles of MOB1 cause a late nuclear 
division arrest at restrictive temperature. This family 
also includes phocein, a rat protein that by yeast two hybrid 
interacts with striatin.
Length=171

 Score = 226 bits (578),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 73/121 (60%), Positives = 106/121 (88%), Gaps = 1/121 (1%)

Query  107  EATLGSGSLRKAVKLPEGEDLNEWLAVNVVDFYNQINLLYGAITEFCSPQSCPEMKATDE  166
            +ATLGSG L+ AVKLP+GEDLNEWLAV+ VDF+N+INLLYG I+EFC+P++CP M A  +
Sbjct  1    KATLGSGDLKTAVKLPKGEDLNEWLAVHTVDFFNEINLLYGTISEFCTPETCPTMSAGPQ  60

Query  167  FEYLWQDSENFKRPTKMSAPEYIEHLMSWVQSNIDNEQMFPSRLGVPFPKAFSSLIRQIF  226
            +EYLW D   +K+PTK+SAP+YI++LM+W+QS +++E++FP+++GVPFPK F S++++IF
Sbjct  61   YEYLWAD-GKYKKPTKLSAPQYIDYLMTWIQSQLNDEKIFPTKVGVPFPKNFLSIVKKIF  119

Query  227  K  227
            +
Sbjct  120  R  120



Lambda      K        H        a         alpha
   0.316    0.130    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00018254

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family. Mob1 is ...  264     2e-92


>CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family.  Mob1 is an essential 
Saccharomyces cerevisiae protein, identified from a two-hybrid 
screen, that binds Mps1p, a protein kinase essential 
for spindle pole body duplication and mitotic checkpoint 
regulation. Mob1 contains no known structural motifs; however 
MOB1 is a member of a conserved gene family and shares sequence 
similarity with a nonessential yeast gene, MOB2. Mob1 
is a phosphoprotein in vivo and a substrate for the Mps1p kinase 
in vitro. Conditional alleles of MOB1 cause a late nuclear 
division arrest at restrictive temperature. This family 
also includes phocein, a rat protein that by yeast two hybrid 
interacts with striatin.
Length=171

 Score = 264 bits (677),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 85/140 (61%), Positives = 121/140 (86%), Gaps = 1/140 (1%)

Query  35   EATLGSGSLRKAVKLPEGEDLNEWLAVNVVDFYNQINLLYGAITEFCSPQSCPEMKATDE  94
            +ATLGSG L+ AVKLP+GEDLNEWLAV+ VDF+N+INLLYG I+EFC+P++CP M A  +
Sbjct  1    KATLGSGDLKTAVKLPKGEDLNEWLAVHTVDFFNEINLLYGTISEFCTPETCPTMSAGPQ  60

Query  95   FEYLWQDSENFKRPTKMSAPEYIEHLMSWVQSNIDNEQMFPSRLGVPFPKAFSSLIRQIF  154
            +EYLW D   +K+PTK+SAP+YI++LM+W+QS +++E++FP+++GVPFPK F S++++IF
Sbjct  61   YEYLWAD-GKYKKPTKLSAPQYIDYLMTWIQSQLNDEKIFPTKVGVPFPKNFLSIVKKIF  119

Query  155  KRLYRVYAHIYCHHYPVVVH  174
            +RL+RVYAHIY HH+  +V 
Sbjct  120  RRLFRVYAHIYHHHFEEIVE  139



Lambda      K        H        a         alpha
   0.321    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0721    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00012357

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family. Mob1 is ...  309     2e-109


>CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family.  Mob1 is an essential 
Saccharomyces cerevisiae protein, identified from a two-hybrid 
screen, that binds Mps1p, a protein kinase essential 
for spindle pole body duplication and mitotic checkpoint 
regulation. Mob1 contains no known structural motifs; however 
MOB1 is a member of a conserved gene family and shares sequence 
similarity with a nonessential yeast gene, MOB2. Mob1 
is a phosphoprotein in vivo and a substrate for the Mps1p kinase 
in vitro. Conditional alleles of MOB1 cause a late nuclear 
division arrest at restrictive temperature. This family 
also includes phocein, a rat protein that by yeast two hybrid 
interacts with striatin.
Length=171

 Score = 309 bits (793),  Expect = 2e-109, Method: Composition-based stats.
 Identities = 105/173 (61%), Positives = 143/173 (83%), Gaps = 2/173 (1%)

Query  35   EATLGSGSLRKAVKLPEGEDLNEWLAVNVVDFYNQINLLYGAITEFCSPQSCPEMKATDE  94
            +ATLGSG L+ AVKLP+GEDLNEWLAV+ VDF+N+INLLYG I+EFC+P++CP M A  +
Sbjct  1    KATLGSGDLKTAVKLPKGEDLNEWLAVHTVDFFNEINLLYGTISEFCTPETCPTMSAGPQ  60

Query  95   FEYLWQDSENFKRPTKMSAPEYIEHLMSWVQSNIDNEQMFPSRLGVPFPKAFSSLIRQIF  154
            +EYLW D   +K+PTK+SAP+YI++LM+W+QS +++E++FP+++GVPFPK F S++++IF
Sbjct  61   YEYLWAD-GKYKKPTKLSAPQYIDYLMTWIQSQLNDEKIFPTKVGVPFPKNFLSIVKKIF  119

Query  155  KRLYRVYAHIYCHHYPVVVHLGLEPHLNTSFKHYVLFVDEHRLATGKDYWGPL  207
            +RL+RVYAHIY HH+  +V LGLE HLNT FKH+VLFV E  L   K+   PL
Sbjct  120  RRLFRVYAHIYHHHFEEIVELGLEAHLNTCFKHFVLFVREFDLLDKKEL-EPL  171



Lambda      K        H        a         alpha
   0.321    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00018255

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family. Mob1 is ...  309     2e-109


>CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family.  Mob1 is an essential 
Saccharomyces cerevisiae protein, identified from a two-hybrid 
screen, that binds Mps1p, a protein kinase essential 
for spindle pole body duplication and mitotic checkpoint 
regulation. Mob1 contains no known structural motifs; however 
MOB1 is a member of a conserved gene family and shares sequence 
similarity with a nonessential yeast gene, MOB2. Mob1 
is a phosphoprotein in vivo and a substrate for the Mps1p kinase 
in vitro. Conditional alleles of MOB1 cause a late nuclear 
division arrest at restrictive temperature. This family 
also includes phocein, a rat protein that by yeast two hybrid 
interacts with striatin.
Length=171

 Score = 309 bits (794),  Expect = 2e-109, Method: Composition-based stats.
 Identities = 105/173 (61%), Positives = 143/173 (83%), Gaps = 2/173 (1%)

Query  35   EATLGSGSLRKAVKLPEGEDLNEWLAVNVVDFYNQINLLYGAITEFCSPQSCPEMKATDE  94
            +ATLGSG L+ AVKLP+GEDLNEWLAV+ VDF+N+INLLYG I+EFC+P++CP M A  +
Sbjct  1    KATLGSGDLKTAVKLPKGEDLNEWLAVHTVDFFNEINLLYGTISEFCTPETCPTMSAGPQ  60

Query  95   FEYLWQDSENFKRPTKMSAPEYIEHLMSWVQSNIDNEQMFPSRLGVPFPKAFSSLIRQIF  154
            +EYLW D   +K+PTK+SAP+YI++LM+W+QS +++E++FP+++GVPFPK F S++++IF
Sbjct  61   YEYLWAD-GKYKKPTKLSAPQYIDYLMTWIQSQLNDEKIFPTKVGVPFPKNFLSIVKKIF  119

Query  155  KRLYRVYAHIYCHHYPVVVHLGLEPHLNTSFKHYVLFVDEHRLATGKDYWGPL  207
            +RL+RVYAHIY HH+  +V LGLE HLNT FKH+VLFV E  L   K+   PL
Sbjct  120  RRLFRVYAHIYHHHFEEIVELGLEAHLNTCFKHFVLFVREFDLLDKKEL-EPL  171



Lambda      K        H        a         alpha
   0.321    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00012358

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family. Mob1 is ...  309     2e-108


>CDD:461000 pfam03637, Mob1_phocein, Mob1/phocein family.  Mob1 is an essential 
Saccharomyces cerevisiae protein, identified from a two-hybrid 
screen, that binds Mps1p, a protein kinase essential 
for spindle pole body duplication and mitotic checkpoint 
regulation. Mob1 contains no known structural motifs; however 
MOB1 is a member of a conserved gene family and shares sequence 
similarity with a nonessential yeast gene, MOB2. Mob1 
is a phosphoprotein in vivo and a substrate for the Mps1p kinase 
in vitro. Conditional alleles of MOB1 cause a late nuclear 
division arrest at restrictive temperature. This family 
also includes phocein, a rat protein that by yeast two hybrid 
interacts with striatin.
Length=171

 Score = 309 bits (795),  Expect = 2e-108, Method: Composition-based stats.
 Identities = 105/173 (61%), Positives = 143/173 (83%), Gaps = 2/173 (1%)

Query  107  EATLGSGSLRKAVKLPEGEDLNEWLAVNVVDFYNQINLLYGAITEFCSPQSCPEMKATDE  166
            +ATLGSG L+ AVKLP+GEDLNEWLAV+ VDF+N+INLLYG I+EFC+P++CP M A  +
Sbjct  1    KATLGSGDLKTAVKLPKGEDLNEWLAVHTVDFFNEINLLYGTISEFCTPETCPTMSAGPQ  60

Query  167  FEYLWQDSENFKRPTKMSAPEYIEHLMSWVQSNIDNEQMFPSRLGVPFPKAFSSLIRQIF  226
            +EYLW D   +K+PTK+SAP+YI++LM+W+QS +++E++FP+++GVPFPK F S++++IF
Sbjct  61   YEYLWAD-GKYKKPTKLSAPQYIDYLMTWIQSQLNDEKIFPTKVGVPFPKNFLSIVKKIF  119

Query  227  KRLYRVYAHIYCHHYPVVVHLGLEPHLNTSFKHYVLFVDEHRLATGKDYWGPL  279
            +RL+RVYAHIY HH+  +V LGLE HLNT FKH+VLFV E  L   K+   PL
Sbjct  120  RRLFRVYAHIYHHHFEEIVELGLEAHLNTCFKHFVLFVREFDLLDKKEL-EPL  171



Lambda      K        H        a         alpha
   0.319    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00012359

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit. Th...  129     1e-38


>CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit.  The ATP 
D subunit from E. coli is the same as the OSCP subunit which 
is this family. The ATP D subunit from metazoa are found in 
family pfam00401.
Length=172

 Score = 129 bits (327),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 5/145 (3%)

Query  47   VDGTYATALYTASAKSSALDQTSKALSSLAQTFKADRKLTSIIAAPTLSASDKQQIIQEL  106
            +   YA AL+  + +   LDQ  + L +L      +  L + ++ PT+SA +K+ +   L
Sbjct  1    IARRYAKALFELAKEKGKLDQVEEELEALEAALAENPDLAAFLSNPTISAEEKKAL---L  57

Query  107  QKIAGNDKGDIIKNFLQTLAENNRLGLLEGICQKFETLMGAHRGEMEVTITSAQELDNKT  166
             ++       +  NFL+ LAEN RLGLL  I ++FE L+   RG +E  +TSA  L  + 
Sbjct  58   LELFKGLLSPLTLNFLKLLAENGRLGLLPEIAEEFEELLDEARGIVEAEVTSAVPLSEEQ  117

Query  167  INRLEKAVSKHELSQGKKLKIVTKV  191
            + +L  A+ K   +  KK+K+  KV
Sbjct  118  LEKLAAALEK--KTGKKKVKLENKV  140



Lambda      K        H        a         alpha
   0.315    0.128    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00018256

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit. Th...  154     5e-48


>CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit.  The ATP 
D subunit from E. coli is the same as the OSCP subunit which 
is this family. The ATP D subunit from metazoa are found in 
family pfam00401.
Length=172

 Score = 154 bits (391),  Expect = 5e-48, Method: Composition-based stats.
 Identities = 65/183 (36%), Positives = 99/183 (54%), Gaps = 17/183 (9%)

Query  47   VDGTYATALVWLASKSSALDQTSKALSSLAQTFKADRKLTSIIAAPTLSASDKQQIIQEL  106
            +   YA AL  LA +   LDQ  + L +L      +  L + ++ PT+SA +K+ +   L
Sbjct  1    IARRYAKALFELAKEKGKLDQVEEELEALEAALAENPDLAAFLSNPTISAEEKKAL---L  57

Query  107  QKIAGNDKGDIIKNFLQTLAENNRLGLLEGICQKFETLMGAHRGEMEVTITSA------Q  160
             ++       +  NFL+ LAEN RLGLL  I ++FE L+   RG +E  +TSA      Q
Sbjct  58   LELFKGLLSPLTLNFLKLLAENGRLGLLPEIAEEFEELLDEARGIVEAEVTSAVPLSEEQ  117

Query  161  VRFDYCVIRLEKAVSKHELSQGKKLKIVTKVRPEIVGGLVVEIGDRTIDLSVSSKLAKLN  220
            +       +L  A+ K   +  KK+K+  KV P ++GG+VV +GD+ ID SV  KL +L 
Sbjct  118  LE------KLAAALEK--KTGKKKVKLENKVDPSLIGGVVVRVGDKVIDGSVKGKLERLK  169

Query  221  KAL  223
            +AL
Sbjct  170  RAL  172



Lambda      K        H        a         alpha
   0.316    0.130    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00012360

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit. Th...  126     1e-37


>CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit.  The ATP 
D subunit from E. coli is the same as the OSCP subunit which 
is this family. The ATP D subunit from metazoa are found in 
family pfam00401.
Length=172

 Score = 126 bits (319),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 46/144 (32%), Positives = 76/144 (53%), Gaps = 5/144 (3%)

Query  47   VDGTYATALYTASAKSSALDQTSKALSSLAQTFKADRKLTSIIAAPTLSASDKQQIIQEL  106
            +   YA AL+  + +   LDQ  + L +L      +  L + ++ PT+SA +K+ +   L
Sbjct  1    IARRYAKALFELAKEKGKLDQVEEELEALEAALAENPDLAAFLSNPTISAEEKKAL---L  57

Query  107  QKIAGNDKGDIIKNFLQTLAENNRLGLLEGICQKFETLMGAHRGEMEVTITSAQELDNKT  166
             ++       +  NFL+ LAEN RLGLL  I ++FE L+   RG +E  +TSA  L  + 
Sbjct  58   LELFKGLLSPLTLNFLKLLAENGRLGLLPEIAEEFEELLDEARGIVEAEVTSAVPLSEEQ  117

Query  167  INRLEKAVSKHELSQGKKLKIVTK  190
            + +L  A+ K   +  KK+K+  K
Sbjct  118  LEKLAAALEK--KTGKKKVKLENK  139



Lambda      K        H        a         alpha
   0.313    0.126    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00012361

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit. Th...  86.8    4e-22


>CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit.  The ATP 
D subunit from E. coli is the same as the OSCP subunit which 
is this family. The ATP D subunit from metazoa are found in 
family pfam00401.
Length=172

 Score = 86.8 bits (216),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query  47   VDGTYATALYTASAKSSALDQTSKALSSLAQTFKADRKLTSIIAAPTLSASDKQQIIQEL  106
            +   YA AL+  + +   LDQ  + L +L      +  L + ++ PT+SA +K+ +   L
Sbjct  1    IARRYAKALFELAKEKGKLDQVEEELEALEAALAENPDLAAFLSNPTISAEEKKAL---L  57

Query  107  QKIAGNDKGDIIKNFLQTLAENNRLGLLEG  136
             ++       +  NFL+ LAEN RLGLL  
Sbjct  58   LELFKGLLSPLTLNFLKLLAENGRLGLLPE  87



Lambda      K        H        a         alpha
   0.314    0.124    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00012362

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit. Th...  174     5e-56


>CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit.  The ATP 
D subunit from E. coli is the same as the OSCP subunit which 
is this family. The ATP D subunit from metazoa are found in 
family pfam00401.
Length=172

 Score = 174 bits (443),  Expect = 5e-56, Method: Composition-based stats.
 Identities = 63/177 (36%), Positives = 101/177 (57%), Gaps = 5/177 (3%)

Query  47   VDGTYATALYTASAKSSALDQTSKALSSLAQTFKADRKLTSIIAAPTLSASDKQQIIQEL  106
            +   YA AL+  + +   LDQ  + L +L      +  L + ++ PT+SA +K+ +   L
Sbjct  1    IARRYAKALFELAKEKGKLDQVEEELEALEAALAENPDLAAFLSNPTISAEEKKAL---L  57

Query  107  QKIAGNDKGDIIKNFLQTLAENNRLGLLEGICQKFETLMGAHRGEMEVTITSAQELDNKT  166
             ++       +  NFL+ LAEN RLGLL  I ++FE L+   RG +E  +TSA  L  + 
Sbjct  58   LELFKGLLSPLTLNFLKLLAENGRLGLLPEIAEEFEELLDEARGIVEAEVTSAVPLSEEQ  117

Query  167  INRLEKAVSKHELSQGKKLKIVTKVNPEIVGGLVVEIGDRTIDLSVSSKLAKLNKAL  223
            + +L  A+ K   +  KK+K+  KV+P ++GG+VV +GD+ ID SV  KL +L +AL
Sbjct  118  LEKLAAALEK--KTGKKKVKLENKVDPSLIGGVVVRVGDKVIDGSVKGKLERLKRAL  172



Lambda      K        H        a         alpha
   0.313    0.128    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00018257

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit. Th...  172     3e-55


>CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit.  The ATP 
D subunit from E. coli is the same as the OSCP subunit which 
is this family. The ATP D subunit from metazoa are found in 
family pfam00401.
Length=172

 Score = 172 bits (438),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 65/177 (37%), Positives = 101/177 (57%), Gaps = 5/177 (3%)

Query  47   VDGTYATALVWLAAKSSALDQTSKALSSLAQTFKADRKLTSIIAAPTLSASDKQQIIQEL  106
            +   YA AL  LA +   LDQ  + L +L      +  L + ++ PT+SA +K+ +   L
Sbjct  1    IARRYAKALFELAKEKGKLDQVEEELEALEAALAENPDLAAFLSNPTISAEEKKAL---L  57

Query  107  QKIAGNDKGDIIKNFLQTLAENNRLGLLEGICQKFETLMGAHRGEMEVTITSAQELDNKT  166
             ++       +  NFL+ LAEN RLGLL  I ++FE L+   RG +E  +TSA  L  + 
Sbjct  58   LELFKGLLSPLTLNFLKLLAENGRLGLLPEIAEEFEELLDEARGIVEAEVTSAVPLSEEQ  117

Query  167  INRLEKAVSKHELSQGKKLKIVTKVNPEIVGGLVVEIGDRTIDLSVSSKLAKLNKAL  223
            + +L  A+ K   +  KK+K+  KV+P ++GG+VV +GD+ ID SV  KL +L +AL
Sbjct  118  LEKLAAALEK--KTGKKKVKLENKVDPSLIGGVVVRVGDKVIDGSVKGKLERLKRAL  172



Lambda      K        H        a         alpha
   0.314    0.128    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00018258

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit. Th...  111     5e-32


>CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit.  The ATP 
D subunit from E. coli is the same as the OSCP subunit which 
is this family. The ATP D subunit from metazoa are found in 
family pfam00401.
Length=172

 Score = 111 bits (281),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 61/114 (54%), Gaps = 3/114 (3%)

Query  47   VDGTYATALYTASAKSSALDQTSKALSSLAQTFKADRKLTSIIAAPTLSASDKQQIIQEL  106
            +   YA AL+  + +   LDQ  + L +L      +  L + ++ PT+SA +K+ +   L
Sbjct  1    IARRYAKALFELAKEKGKLDQVEEELEALEAALAENPDLAAFLSNPTISAEEKKAL---L  57

Query  107  QKIAGNDKGDIIKNFLQTLAENNRLGLLEGICQKFETLMGAHRGEMEVTITSAQ  160
             ++       +  NFL+ LAEN RLGLL  I ++FE L+   RG +E  +TSA 
Sbjct  58   LELFKGLLSPLTLNFLKLLAENGRLGLLPEIAEEFEELLDEARGIVEAEVTSAV  111



Lambda      K        H        a         alpha
   0.318    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00018259

Length=168
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit. Th...  109     2e-31


>CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit.  The ATP 
D subunit from E. coli is the same as the OSCP subunit which 
is this family. The ATP D subunit from metazoa are found in 
family pfam00401.
Length=172

 Score = 109 bits (274),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 61/114 (54%), Gaps = 3/114 (3%)

Query  47   VDGTYATALYTASAKSSALDQTSKALSSLAQTFKADRKLTSIIAAPTLSASDKQQIIQEL  106
            +   YA AL+  + +   LDQ  + L +L      +  L + ++ PT+SA +K+ +   L
Sbjct  1    IARRYAKALFELAKEKGKLDQVEEELEALEAALAENPDLAAFLSNPTISAEEKKAL---L  57

Query  107  QKIAGNDKGDIIKNFLQTLAENNRLGLLEGICQKFETLMGAHRGEMEVTITSAQ  160
             ++       +  NFL+ LAEN RLGLL  I ++FE L+   RG +E  +TSA 
Sbjct  58   LELFKGLLSPLTLNFLKLLAENGRLGLLPEIAEEFEELLDEARGIVEAEVTSAV  111



Lambda      K        H        a         alpha
   0.315    0.127    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00012363

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit. Th...  171     7e-55


>CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit.  The ATP 
D subunit from E. coli is the same as the OSCP subunit which 
is this family. The ATP D subunit from metazoa are found in 
family pfam00401.
Length=172

 Score = 171 bits (436),  Expect = 7e-55, Method: Composition-based stats.
 Identities = 63/177 (36%), Positives = 101/177 (57%), Gaps = 5/177 (3%)

Query  47   VDGTYATALYTASAKSSALDQTSKALSSLAQTFKADRKLTSIIAAPTLSASDKQQIIQEL  106
            +   YA AL+  + +   LDQ  + L +L      +  L + ++ PT+SA +K+ +   L
Sbjct  1    IARRYAKALFELAKEKGKLDQVEEELEALEAALAENPDLAAFLSNPTISAEEKKAL---L  57

Query  107  QKIAGNDKGDIIKNFLQTLAENNRLGLLEGICQKFETLMGAHRGEMEVTITSAQVLDNKT  166
             ++       +  NFL+ LAEN RLGLL  I ++FE L+   RG +E  +TSA  L  + 
Sbjct  58   LELFKGLLSPLTLNFLKLLAENGRLGLLPEIAEEFEELLDEARGIVEAEVTSAVPLSEEQ  117

Query  167  INRLEKAVSKHELSQGKKLKIVTKVNPEIVGGLVVEIGDRTIDLSVSSKLAKLNKAL  223
            + +L  A+ K   +  KK+K+  KV+P ++GG+VV +GD+ ID SV  KL +L +AL
Sbjct  118  LEKLAAALEK--KTGKKKVKLENKVDPSLIGGVVVRVGDKVIDGSVKGKLERLKRAL  172



Lambda      K        H        a         alpha
   0.313    0.128    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00012364

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit. Th...  128     2e-38


>CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit.  The ATP 
D subunit from E. coli is the same as the OSCP subunit which 
is this family. The ATP D subunit from metazoa are found in 
family pfam00401.
Length=172

 Score = 128 bits (324),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 5/145 (3%)

Query  47   VDGTYATALYTASAKSSALDQTSKALSSLAQTFKADRKLTSIIAAPTLSASDKQQIIQEL  106
            +   YA AL+  + +   LDQ  + L +L      +  L + ++ PT+SA +K+ +   L
Sbjct  1    IARRYAKALFELAKEKGKLDQVEEELEALEAALAENPDLAAFLSNPTISAEEKKAL---L  57

Query  107  QKIAGNDKGDIIKNFLQTLAENNRLGLLEGICQKFETLMGAHRGEMEVTITSAQELDNKT  166
             ++       +  NFL+ LAEN RLGLL  I ++FE L+   RG +E  +TSA  L  + 
Sbjct  58   LELFKGLLSPLTLNFLKLLAENGRLGLLPEIAEEFEELLDEARGIVEAEVTSAVPLSEEQ  117

Query  167  INRLEKAVSKHELSQGKKLKIVTKV  191
            + +L  A+ K   +  KK+K+  KV
Sbjct  118  LEKLAAALEK--KTGKKKVKLENKV  140



Lambda      K        H        a         alpha
   0.313    0.126    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00018260

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit. Th...  172     3e-55


>CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit.  The ATP 
D subunit from E. coli is the same as the OSCP subunit which 
is this family. The ATP D subunit from metazoa are found in 
family pfam00401.
Length=172

 Score = 172 bits (438),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 63/177 (36%), Positives = 100/177 (56%), Gaps = 5/177 (3%)

Query  47   VDGTYATALYTASAKSSALDQTSKALSSLAQTFKADRKLTSIIAAPTLSASDKQQIIQEL  106
            +   YA AL+  + +   LDQ  + L +L      +  L + ++ PT+SA +K+ +   L
Sbjct  1    IARRYAKALFELAKEKGKLDQVEEELEALEAALAENPDLAAFLSNPTISAEEKKAL---L  57

Query  107  QKIAGNDKGDIIKNFLQTLAENNRLGLLEGICQKFETLMGAHRGEMEVTITSAQELDNKT  166
             ++       +  NFL+ LAEN RLGLL  I ++FE L+   RG +E  +TSA  L  + 
Sbjct  58   LELFKGLLSPLTLNFLKLLAENGRLGLLPEIAEEFEELLDEARGIVEAEVTSAVPLSEEQ  117

Query  167  INRLEKAVSKHELSQGKKLKIVTKVRPEIVGGLVVEIGDRTIDLSVSSKLAKLNKAL  223
            + +L  A+ K   +  KK+K+  KV P ++GG+VV +GD+ ID SV  KL +L +AL
Sbjct  118  LEKLAAALEK--KTGKKKVKLENKVDPSLIGGVVVRVGDKVIDGSVKGKLERLKRAL  172



Lambda      K        H        a         alpha
   0.313    0.128    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00018261

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit. Th...  169     6e-54


>CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit.  The ATP 
D subunit from E. coli is the same as the OSCP subunit which 
is this family. The ATP D subunit from metazoa are found in 
family pfam00401.
Length=172

 Score = 169 bits (430),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 65/177 (37%), Positives = 100/177 (56%), Gaps = 5/177 (3%)

Query  47   VDGTYATALVWLAFLSSALDQTSKALSSLAQTFKADRKLTSIIAAPTLSASDKQQIIQEL  106
            +   YA AL  LA     LDQ  + L +L      +  L + ++ PT+SA +K+ +   L
Sbjct  1    IARRYAKALFELAKEKGKLDQVEEELEALEAALAENPDLAAFLSNPTISAEEKKAL---L  57

Query  107  QKIAGNDKGDIIKNFLQTLAENNRLGLLEGICQKFETLMGAHRGEMEVTITSAQELDNKT  166
             ++       +  NFL+ LAEN RLGLL  I ++FE L+   RG +E  +TSA  L  + 
Sbjct  58   LELFKGLLSPLTLNFLKLLAENGRLGLLPEIAEEFEELLDEARGIVEAEVTSAVPLSEEQ  117

Query  167  INRLEKAVSKHELSQGKKLKIVTKVNPEIVGGLVVEIGDRTIDLSVSSKLAKLNKAL  223
            + +L  A+ K   +  KK+K+  KV+P ++GG+VV +GD+ ID SV  KL +L +AL
Sbjct  118  LEKLAAALEK--KTGKKKVKLENKVDPSLIGGVVVRVGDKVIDGSVKGKLERLKRAL  172



Lambda      K        H        a         alpha
   0.315    0.129    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00012366

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit. Th...  78.3    1e-19


>CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit.  The ATP 
D subunit from E. coli is the same as the OSCP subunit which 
is this family. The ATP D subunit from metazoa are found in 
family pfam00401.
Length=172

 Score = 78.3 bits (194),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 36/172 (21%), Positives = 60/172 (35%), Gaps = 73/172 (42%)

Query  47   VDGTYATALYTASAKSSALDQTSKALSSLAQTFKADRKLTSIIAAPTLSASDKQQIIQEL  106
            +   YA AL+  + +   LDQ  + L +L      +  L + ++ PT+SA +K+ ++ EL
Sbjct  1    IARRYAKALFELAKEKGKLDQVEEELEALEAALAENPDLAAFLSNPTISAEEKKALLLEL  60

Query  107  QK----------------------------------------------------------  108
             K                                                          
Sbjct  61   FKGLLSPLTLNFLKLLAENGRLGLLPEIAEEFEELLDEARGIVEAEVTSAVPLSEEQLEK  120

Query  109  ---------------IVTKVNPEIVGGLVVEIGDRTIDLSVSSKLAKLNKAL  145
                           +  KV+P ++GG+VV +GD+ ID SV  KL +L +AL
Sbjct  121  LAAALEKKTGKKKVKLENKVDPSLIGGVVVRVGDKVIDGSVKGKLERLKRAL  172



Lambda      K        H        a         alpha
   0.313    0.126    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00012365

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit. Th...  174     5e-56


>CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit.  The ATP 
D subunit from E. coli is the same as the OSCP subunit which 
is this family. The ATP D subunit from metazoa are found in 
family pfam00401.
Length=172

 Score = 174 bits (443),  Expect = 5e-56, Method: Composition-based stats.
 Identities = 63/177 (36%), Positives = 101/177 (57%), Gaps = 5/177 (3%)

Query  47   VDGTYATALYTASAKSSALDQTSKALSSLAQTFKADRKLTSIIAAPTLSASDKQQIIQEL  106
            +   YA AL+  + +   LDQ  + L +L      +  L + ++ PT+SA +K+ +   L
Sbjct  1    IARRYAKALFELAKEKGKLDQVEEELEALEAALAENPDLAAFLSNPTISAEEKKAL---L  57

Query  107  QKIAGNDKGDIIKNFLQTLAENNRLGLLEGICQKFETLMGAHRGEMEVTITSAQELDNKT  166
             ++       +  NFL+ LAEN RLGLL  I ++FE L+   RG +E  +TSA  L  + 
Sbjct  58   LELFKGLLSPLTLNFLKLLAENGRLGLLPEIAEEFEELLDEARGIVEAEVTSAVPLSEEQ  117

Query  167  INRLEKAVSKHELSQGKKLKIVTKVNPEIVGGLVVEIGDRTIDLSVSSKLAKLNKAL  223
            + +L  A+ K   +  KK+K+  KV+P ++GG+VV +GD+ ID SV  KL +L +AL
Sbjct  118  LEKLAAALEK--KTGKKKVKLENKVDPSLIGGVVVRVGDKVIDGSVKGKLERLKRAL  172



Lambda      K        H        a         alpha
   0.313    0.128    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00018262

Length=83
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit. Th...  87.2    5e-24


>CDD:459714 pfam00213, OSCP, ATP synthase delta (OSCP) subunit.  The ATP 
D subunit from E. coli is the same as the OSCP subunit which 
is this family. The ATP D subunit from metazoa are found in 
family pfam00401.
Length=172

 Score = 87.2 bits (217),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 2/77 (3%)

Query  3    AHRGEMEVTITSAQELDNKTINRLEKAVSKHELSQGKKLKIVTKVNPEIVGGLVVEIGDR  62
              RG +E  +TSA  L  + + +L  A+ K   +  KK+K+  KV+P ++GG+VV +GD+
Sbjct  98   EARGIVEAEVTSAVPLSEEQLEKLAAALEK--KTGKKKVKLENKVDPSLIGGVVVRVGDK  155

Query  63   TIDLSVSSKLAKLNKAL  79
             ID SV  KL +L +AL
Sbjct  156  VIDGSVKGKLERLKRAL  172



Lambda      K        H        a         alpha
   0.310    0.128    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00012367

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460365 pfam01866, Diphthamide_syn, Putative diphthamide synth...  416     2e-148


>CDD:460365 pfam01866, Diphthamide_syn, Putative diphthamide synthesis protein. 
 Diphthamide_syn, diphthamide synthase, catalyzes the 
last amidation step of diphthamide biosynthesis using ammonium 
and ATP. Human DPH1 is a candidate tumor suppressor gene. 
DPH2 from yeast, which confers resistance to diphtheria toxin 
has been found to be involved in diphthamide synthesis. 
Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating 
diphthamide, a post-translationally modified 
histidine residue present in EF2. Diphthamide synthase is evolutionarily 
conserved in eukaryotes. Diphthamide is a post-translationally 
modified histidine residue found on archaeal 
and eukaryotic translation elongation factor 2 (eEF-2).
Length=302

 Score = 416 bits (1073),  Expect = 2e-148, Method: Composition-based stats.
 Identities = 145/284 (51%), Positives = 186/284 (65%), Gaps = 10/284 (4%)

Query  1    MGDVTYGACCIDDYTARALGCDLLVHYAHSCLIPVDVTQIKTLYIFVDISIDTSHLIATL  60
            +GD TYGACC+D+  A  LG DLLVHY HSCL PVD  ++  LY+FV I ID  HL+ TL
Sbjct  26   LGDTTYGACCVDEVAAEHLGADLLVHYGHSCLSPVD--RLPVLYVFVKIPIDVEHLVETL  83

Query  61   ERNFQPGKTIATVGTIQFNATLHGLKPVLERAGFKVV-IPQIAPLSKGEILGCTSPQL--  117
            ++NF  GK IA V TIQ+   L  +K +LE  G++VV IPQ  PLS G++LGCT P L  
Sbjct  84   KKNFPDGKKIALVTTIQYVHLLEEVKEILESEGYEVVIIPQSRPLSPGQVLGCTFPALKD  143

Query  118  SPTEIDILLYLGDGRFHLESAMIHNPTIPAYRYDPYSRTLSRETYSHDEMHALRRDAINT  177
               ++D +LY+GDGRFHL   M+  P  P YRYDPYS+TL+ ETY  ++M   R  AI  
Sbjct  144  LEEDVDAILYIGDGRFHLLGLMLSTPKKPVYRYDPYSKTLTEETYDAEKMLRRRYAAIEK  203

Query  178  AKSAKKWGIILGSLGRQGNPNTMAMIENHLNERGIPFVNLLLSEIFPGKLASMSDVECWV  237
            A+ AKK+GII+G+LG QG       ++  L E G     +L+ EI P KLA+ S+++ +V
Sbjct  204  ARDAKKFGIIVGTLGGQGRLKLAERLKKLLKEAGKKSYLILVGEINPAKLANFSEIDAFV  263

Query  238  QIACPRLSIDWGYAFPRPLLTPYEALIALGVREHWDSANSGVYP  281
            Q ACPRLSID G  F +P+LTPYE  +ALG RE W     G YP
Sbjct  264  QTACPRLSIDDGKDFYKPVLTPYELEVALGERE-WT----GEYP  302



Lambda      K        H        a         alpha
   0.322    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00018263

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460570 pfam02487, CLN3, CLN3 protein. This is a family of pro...  575     0.0  


>CDD:460570 pfam02487, CLN3, CLN3 protein.  This is a family of proteins 
from the CLN3 gene. A mis-sense mutation of glutamic acid (E) 
to lysine (K) at position 295 in the human protein has been 
implicated in Juvenile neuronal ceroid lipofuscinosis (Batten 
disease). Batten disease is characterized by the accumulation 
of autofluorescent material in the lysosomes of most cells. 
Members of this family are transmembrane proteins functional 
in pre-vacuolar compartments. The protein in Sch.pombe 
is found to be localized to the vacuolar membrane, and a lack 
of functional protein clearly affects the size and pH of 
the vacuole. Thus the protein is necessary for vacuolar homeostasis. 
It is important for localization of late endosomal/lysosomal 
compartments, and it interacts with motor components 
driving both plus and minus end microtubular trafficking: 
tubulin, dynactin, dynein and kinesin-2.
Length=383

 Score = 575 bits (1486),  Expect = 0.0, Method: Composition-based stats.
 Identities = 234/406 (58%), Positives = 282/406 (69%), Gaps = 24/406 (6%)

Query  44   VAFWLFGLINNVLYVVILSAALDLVGPSVPKGVVLLADVIPSFATKLIAPYFIHMVPYPV  103
            VAFWLFGL NNVLYVVILSAALD+VGPS PKGVVLLAD++PS   KL AP+FIH VPY V
Sbjct  1    VAFWLFGLCNNVLYVVILSAALDIVGPSTPKGVVLLADILPSLLIKLTAPFFIHRVPYSV  60

Query  104  RIIIFVFLSAAGMLLVALSPPYTDGGTIATKLAGIVLASLSSGGGELSFVGLTHFYGPFS  163
            RI++ V LSAAGMLLVA SP       +  KL G+VLASLSSG GEL+F+ LTH+YG FS
Sbjct  61   RILLCVLLSAAGMLLVAFSPS------LWVKLLGVVLASLSSGLGELTFLQLTHYYGSFS  114

Query  164  LAAWGSGTGAAGLVGAGAYALATTSLGLSVKATLLASSCLPAVMVVSFFMVLPRSPLQPI  223
            LA W SGTG AGLVGAG YAL T+ LGLSV+ TLL S  LP +M++S+F +LP  PL+  
Sbjct  115  LAGWSSGTGGAGLVGAGLYALLTSILGLSVRTTLLLSLVLPFLMLLSYFFLLPHPPLRYS  174

Query  224  SAAYAGYRAVEEREELAEEREFMEGDRDATFDEQERLLGASVLSDQSKKAGWQRFKRDLK  283
            S                               E      +   S +S  +    F+  L+
Sbjct  175  SRLPES-----------------TESESDGLLEYTPASASEDASAESSSSLKLHFREKLR  217

Query  284  RVRGLFFPFMLPLLLVYVAEYTINQGVSPTLLFPLDESPFAHFRAFYPAYNAIYQVGVFI  343
            R++ LF P+MLPL LVY+AEYTINQGVSPTLLFPLDESPF  +R  Y  Y  +YQ+GVFI
Sbjct  218  RIKPLFLPYMLPLFLVYLAEYTINQGVSPTLLFPLDESPFLSYRDQYRWYQVLYQLGVFI  277

Query  344  SRSSTPFFRIHDLYLPSFLQILNLVLLTLQAVFNF-IPSVYIIFIIIFWEGLLGGLVYVN  402
            SRSS PF RI +LYL S LQ LNLVLLTLQ++++F IPS++IIF++IF+EGLLGG  YVN
Sbjct  278  SRSSVPFIRIRNLYLLSVLQFLNLVLLTLQSLYDFFIPSIWIIFLLIFYEGLLGGAAYVN  337

Query  403  TFAEIGDRVPKEDREFSLGATTVSDAAGICIAGFVSMVFEVWLCDW  448
            TF  I + VP E+REFSLGA +VSD+ GI +AG ++M  E  LC  
Sbjct  338  TFYNISEEVPPEEREFSLGAVSVSDSLGILLAGLLAMPLENALCSL  383



Lambda      K        H        a         alpha
   0.326    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00018264

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460570 pfam02487, CLN3, CLN3 protein. This is a family of pro...  570     0.0  


>CDD:460570 pfam02487, CLN3, CLN3 protein.  This is a family of proteins 
from the CLN3 gene. A mis-sense mutation of glutamic acid (E) 
to lysine (K) at position 295 in the human protein has been 
implicated in Juvenile neuronal ceroid lipofuscinosis (Batten 
disease). Batten disease is characterized by the accumulation 
of autofluorescent material in the lysosomes of most cells. 
Members of this family are transmembrane proteins functional 
in pre-vacuolar compartments. The protein in Sch.pombe 
is found to be localized to the vacuolar membrane, and a lack 
of functional protein clearly affects the size and pH of 
the vacuole. Thus the protein is necessary for vacuolar homeostasis. 
It is important for localization of late endosomal/lysosomal 
compartments, and it interacts with motor components 
driving both plus and minus end microtubular trafficking: 
tubulin, dynactin, dynein and kinesin-2.
Length=383

 Score = 570 bits (1472),  Expect = 0.0, Method: Composition-based stats.
 Identities = 234/406 (58%), Positives = 282/406 (69%), Gaps = 24/406 (6%)

Query  32   VAFWLFGLINNVLYVVILSAALDLVGPSVPKGVVLLADVIPSFATKLIAPYFIHMVPYPV  91
            VAFWLFGL NNVLYVVILSAALD+VGPS PKGVVLLAD++PS   KL AP+FIH VPY V
Sbjct  1    VAFWLFGLCNNVLYVVILSAALDIVGPSTPKGVVLLADILPSLLIKLTAPFFIHRVPYSV  60

Query  92   RIIIFVFLSAAGMLLVALSPPYTDGGTIATKLAGIVLASLSSGGGELSFVGLTHFYGPFS  151
            RI++ V LSAAGMLLVA SP       +  KL G+VLASLSSG GEL+F+ LTH+YG FS
Sbjct  61   RILLCVLLSAAGMLLVAFSPS------LWVKLLGVVLASLSSGLGELTFLQLTHYYGSFS  114

Query  152  LAAWGSGTGAAGLVGAGAYALATTSLGLSVKATLLASSCLPAVMVVSFFMVLPRSPLQPI  211
            LA W SGTG AGLVGAG YAL T+ LGLSV+ TLL S  LP +M++S+F +LP  PL+  
Sbjct  115  LAGWSSGTGGAGLVGAGLYALLTSILGLSVRTTLLLSLVLPFLMLLSYFFLLPHPPLRYS  174

Query  212  SAAYAGYRAVEEREELAEEREFMEGDRDATFDEQERLLGASVLSDQSKKAGWQRFKRDLK  271
            S                               E      +   S +S  +    F+  L+
Sbjct  175  SRLPES-----------------TESESDGLLEYTPASASEDASAESSSSLKLHFREKLR  217

Query  272  RVRGLFFPFMLPLLLVYVAEYTINQGVSPTLLFPLDESPFAHFRAFYPAYNAIYQVGVFI  331
            R++ LF P+MLPL LVY+AEYTINQGVSPTLLFPLDESPF  +R  Y  Y  +YQ+GVFI
Sbjct  218  RIKPLFLPYMLPLFLVYLAEYTINQGVSPTLLFPLDESPFLSYRDQYRWYQVLYQLGVFI  277

Query  332  SRSSTPFFRIHDLYLPSFLQILNLVLLTLQAVFNF-IPSVYIIFIIIFWEGLLGGLVYVN  390
            SRSS PF RI +LYL S LQ LNLVLLTLQ++++F IPS++IIF++IF+EGLLGG  YVN
Sbjct  278  SRSSVPFIRIRNLYLLSVLQFLNLVLLTLQSLYDFFIPSIWIIFLLIFYEGLLGGAAYVN  337

Query  391  TFAEIGDRVPKEDREFSLGATTVSDAAGICIAGFVSMVFEVWLCDW  436
            TF  I + VP E+REFSLGA +VSD+ GI +AG ++M  E  LC  
Sbjct  338  TFYNISEEVPPEEREFSLGAVSVSDSLGILLAGLLAMPLENALCSL  383



Lambda      K        H        a         alpha
   0.327    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00012371

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460570 pfam02487, CLN3, CLN3 protein. This is a family of pro...  575     0.0  


>CDD:460570 pfam02487, CLN3, CLN3 protein.  This is a family of proteins 
from the CLN3 gene. A mis-sense mutation of glutamic acid (E) 
to lysine (K) at position 295 in the human protein has been 
implicated in Juvenile neuronal ceroid lipofuscinosis (Batten 
disease). Batten disease is characterized by the accumulation 
of autofluorescent material in the lysosomes of most cells. 
Members of this family are transmembrane proteins functional 
in pre-vacuolar compartments. The protein in Sch.pombe 
is found to be localized to the vacuolar membrane, and a lack 
of functional protein clearly affects the size and pH of 
the vacuole. Thus the protein is necessary for vacuolar homeostasis. 
It is important for localization of late endosomal/lysosomal 
compartments, and it interacts with motor components 
driving both plus and minus end microtubular trafficking: 
tubulin, dynactin, dynein and kinesin-2.
Length=383

 Score = 575 bits (1486),  Expect = 0.0, Method: Composition-based stats.
 Identities = 234/406 (58%), Positives = 282/406 (69%), Gaps = 24/406 (6%)

Query  44   VAFWLFGLINNVLYVVILSAALDLVGPSVPKGVVLLADVIPSFATKLIAPYFIHMVPYPV  103
            VAFWLFGL NNVLYVVILSAALD+VGPS PKGVVLLAD++PS   KL AP+FIH VPY V
Sbjct  1    VAFWLFGLCNNVLYVVILSAALDIVGPSTPKGVVLLADILPSLLIKLTAPFFIHRVPYSV  60

Query  104  RIIIFVFLSAAGMLLVALSPPYTDGGTIATKLAGIVLASLSSGGGELSFVGLTHFYGPFS  163
            RI++ V LSAAGMLLVA SP       +  KL G+VLASLSSG GEL+F+ LTH+YG FS
Sbjct  61   RILLCVLLSAAGMLLVAFSPS------LWVKLLGVVLASLSSGLGELTFLQLTHYYGSFS  114

Query  164  LAAWGSGTGAAGLVGAGAYALATTSLGLSVKATLLASSCLPAVMVVSFFMVLPRSPLQPI  223
            LA W SGTG AGLVGAG YAL T+ LGLSV+ TLL S  LP +M++S+F +LP  PL+  
Sbjct  115  LAGWSSGTGGAGLVGAGLYALLTSILGLSVRTTLLLSLVLPFLMLLSYFFLLPHPPLRYS  174

Query  224  SAAYAGYRAVEEREELAEEREFMEGDRDATFDEQERLLGASVLSDQSKKAGWQRFKRDLK  283
            S                               E      +   S +S  +    F+  L+
Sbjct  175  SRLPES-----------------TESESDGLLEYTPASASEDASAESSSSLKLHFREKLR  217

Query  284  RVRGLFFPFMLPLLLVYVAEYTINQGVSPTLLFPLDESPFAHFRAFYPAYNAIYQVGVFI  343
            R++ LF P+MLPL LVY+AEYTINQGVSPTLLFPLDESPF  +R  Y  Y  +YQ+GVFI
Sbjct  218  RIKPLFLPYMLPLFLVYLAEYTINQGVSPTLLFPLDESPFLSYRDQYRWYQVLYQLGVFI  277

Query  344  SRSSTPFFRIHDLYLPSFLQILNLVLLTLQAVFNF-IPSVYIIFIIIFWEGLLGGLVYVN  402
            SRSS PF RI +LYL S LQ LNLVLLTLQ++++F IPS++IIF++IF+EGLLGG  YVN
Sbjct  278  SRSSVPFIRIRNLYLLSVLQFLNLVLLTLQSLYDFFIPSIWIIFLLIFYEGLLGGAAYVN  337

Query  403  TFAEIGDRVPKEDREFSLGATTVSDAAGICIAGFVSMVFEVWLCDW  448
            TF  I + VP E+REFSLGA +VSD+ GI +AG ++M  E  LC  
Sbjct  338  TFYNISEEVPPEEREFSLGAVSVSDSLGILLAGLLAMPLENALCSL  383



Lambda      K        H        a         alpha
   0.326    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00018265

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  154     3e-45


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 154 bits (390),  Expect = 3e-45, Method: Composition-based stats.
 Identities = 65/299 (22%), Positives = 113/299 (38%), Gaps = 36/299 (12%)

Query  33   VRIVEVGPRDGLQNEKKSIPLETKLQLIEKLAKTGVTTIEAGSFVPAKWVPQMASTAEIC  92
            V I +   RDG Q    +  ++ KL +   L   GV  IE G   PA           I 
Sbjct  2    VAICDTTLRDGEQALGVAFSIDEKLAIARALDAAGVDEIEVG--FPAASEDDFEVVRAIA  59

Query  93   EHLLRSPPQSQHAIAYNYLVPNVKGLESLIKVMDATCSTAETPGSATKPPTTTEISLFAA  152
            + +  +                   +++            E    A        + +F A
Sbjct  60   KVIPHARILV-------LCRAREHDIKA----------AVEALKGAGAV----RVHVFIA  98

Query  153  ATEAFSKANTNCTIAESLERIRPIVALAKTKDIRVRGYVSVALGCPYEGPDVPPSKVADI  212
             ++   K        E  +R    V  A+++ I V                  P  +A++
Sbjct  99   TSDLHRKYKLGKDREEVAKRAVAAVKAARSRGIDVE------FSPEDAS-RTDPEFLAEV  151

Query  213  TATLLEMGADEVSVADTTGMGTAPRTLELLQALKAAGIANTDLALHFHDTYGQALVNTIV  272
                +E GA  +++ DT G+ T     EL+ ALKA       +++H H+  G A+ N++ 
Sbjct  152  VEAAIEAGATRINIPDTVGVLTPNEAAELISALKARVPNKAIISVHCHNDLGMAVANSLA  211

Query  273  GLEHGIRIFDSSVGGLGGCPYSKGATGNVSTEDLIHTLHGLGMHTGINLEEMSKIGSWI  331
             +E G    D +V G+G         GN + E++   L GLG+ TG++L+ +  I + +
Sbjct  212  AVEAGADRVDGTVNGIG------ERAGNAALEEVAAALEGLGVDTGLDLQRLRSIANLV  264



Lambda      K        H        a         alpha
   0.316    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00018266

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460570 pfam02487, CLN3, CLN3 protein. This is a family of pro...  570     0.0  


>CDD:460570 pfam02487, CLN3, CLN3 protein.  This is a family of proteins 
from the CLN3 gene. A mis-sense mutation of glutamic acid (E) 
to lysine (K) at position 295 in the human protein has been 
implicated in Juvenile neuronal ceroid lipofuscinosis (Batten 
disease). Batten disease is characterized by the accumulation 
of autofluorescent material in the lysosomes of most cells. 
Members of this family are transmembrane proteins functional 
in pre-vacuolar compartments. The protein in Sch.pombe 
is found to be localized to the vacuolar membrane, and a lack 
of functional protein clearly affects the size and pH of 
the vacuole. Thus the protein is necessary for vacuolar homeostasis. 
It is important for localization of late endosomal/lysosomal 
compartments, and it interacts with motor components 
driving both plus and minus end microtubular trafficking: 
tubulin, dynactin, dynein and kinesin-2.
Length=383

 Score = 570 bits (1472),  Expect = 0.0, Method: Composition-based stats.
 Identities = 234/406 (58%), Positives = 282/406 (69%), Gaps = 24/406 (6%)

Query  32   VAFWLFGLINNVLYVVILSAALDLVGPSVPKGVVLLADVIPSFATKLIAPYFIHMVPYPV  91
            VAFWLFGL NNVLYVVILSAALD+VGPS PKGVVLLAD++PS   KL AP+FIH VPY V
Sbjct  1    VAFWLFGLCNNVLYVVILSAALDIVGPSTPKGVVLLADILPSLLIKLTAPFFIHRVPYSV  60

Query  92   RIIIFVFLSAAGMLLVALSPPYTDGGTIATKLAGIVLASLSSGGGELSFVGLTHFYGPFS  151
            RI++ V LSAAGMLLVA SP       +  KL G+VLASLSSG GEL+F+ LTH+YG FS
Sbjct  61   RILLCVLLSAAGMLLVAFSPS------LWVKLLGVVLASLSSGLGELTFLQLTHYYGSFS  114

Query  152  LAAWGSGTGAAGLVGAGAYALATTSLGLSVKATLLASSCLPAVMVVSFFMVLPRSPLQPI  211
            LA W SGTG AGLVGAG YAL T+ LGLSV+ TLL S  LP +M++S+F +LP  PL+  
Sbjct  115  LAGWSSGTGGAGLVGAGLYALLTSILGLSVRTTLLLSLVLPFLMLLSYFFLLPHPPLRYS  174

Query  212  SAAYAGYRAVEEREELAEEREFMEGDRDATFDEQERLLGASVLSDQSKKAGWQRFKRDLK  271
            S                               E      +   S +S  +    F+  L+
Sbjct  175  SRLPES-----------------TESESDGLLEYTPASASEDASAESSSSLKLHFREKLR  217

Query  272  RVRGLFFPFMLPLLLVYVAEYTINQGVSPTLLFPLDESPFAHFRAFYPAYNAIYQVGVFI  331
            R++ LF P+MLPL LVY+AEYTINQGVSPTLLFPLDESPF  +R  Y  Y  +YQ+GVFI
Sbjct  218  RIKPLFLPYMLPLFLVYLAEYTINQGVSPTLLFPLDESPFLSYRDQYRWYQVLYQLGVFI  277

Query  332  SRSSTPFFRIHDLYLPSFLQILNLVLLTLQAVFNF-IPSVYIIFIIIFWEGLLGGLVYVN  390
            SRSS PF RI +LYL S LQ LNLVLLTLQ++++F IPS++IIF++IF+EGLLGG  YVN
Sbjct  278  SRSSVPFIRIRNLYLLSVLQFLNLVLLTLQSLYDFFIPSIWIIFLLIFYEGLLGGAAYVN  337

Query  391  TFAEIGDRVPKEDREFSLGATTVSDAAGICIAGFVSMVFEVWLCDW  436
            TF  I + VP E+REFSLGA +VSD+ GI +AG ++M  E  LC  
Sbjct  338  TFYNISEEVPPEEREFSLGAVSVSDSLGILLAGLLAMPLENALCSL  383



Lambda      K        H        a         alpha
   0.327    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00012368

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395148 pfam00202, Aminotran_3, Aminotransferase class-III         377     1e-129


>CDD:395148 pfam00202, Aminotran_3, Aminotransferase class-III.  
Length=397

 Score = 377 bits (969),  Expect = 1e-129, Method: Composition-based stats.
 Identities = 168/411 (41%), Positives = 235/411 (57%), Gaps = 34/411 (8%)

Query  6    VRPTPVMI-KGQGCYVWDMENRRYLDLTAGIAVNSLGHCDPEIAKIIAEQAETLIHAS-N  63
            V P  + I K +GCY+ D++  RYLD  +GIAV +LGHC P +   +  QA+ L H S  
Sbjct  6    VDPILLFITKAKGCYLTDVDGNRYLDFYSGIAVTNLGHCHPALVAAVKTQADKLSHVSFG  65

Query  64   LYHNAWTGALSKLLVALTHQSGAMRDASQVFISNSGTEANEAAIKFARKVGRSLEPSGAK  123
             + N     L++ L+ LT          +VF+ NSG+EANE A+K ARK  R    +G +
Sbjct  66   AFTNEPALDLAEKLLKLT-------PGDRVFLMNSGSEANETAVKLARKWYREKGATG-R  117

Query  124  HEFVSFHNSFHGRTMGALSAT-PNPKYQTPFSPMVPGFKYGNYND------------IEQ  170
             + ++F  +FHGRTMGALS T   PKY+T F P +PGF    Y D            +E 
Sbjct  118  TKIIAFSGAFHGRTMGALSVTGSKPKYKTGFGPFLPGFPRLPYPDPEFLKEQRCLEELEA  177

Query  171  LQELITDKSCGVIVEPIQGEGGVHTATPEFLAALRKRCDEVGAVLIFDEIQCGLSRTGSF  230
            L  +  D+   VIVEPIQGEGGV+  +P FLA LR  C + G +LI DE+Q G  RTG  
Sbjct  178  LIAVKDDEVAAVIVEPIQGEGGVNPPSPGFLAGLRAICKKHGVLLIADEVQTGFGRTGKL  237

Query  231  WAHAHPSLKPTSGEAAHPDILTTAKALGNGIPIGATIVSGKTVAEHIKTGDHGTTFGGNP  290
            +AH H  +         PDI+T AKAL  G P+ AT+   + V +    G HG TFGGNP
Sbjct  238  FAHEHWGV--------PPDIMTFAKALTGGFPLAATLGRAE-VMQAFAPGSHGGTFGGNP  288

Query  291  LACRVAHHIVERLASPELQKSVEAKSLLFVSGFQSLQKKYPDVISEIRGRGLILGVQLSK  350
            LAC  A   +E +   +L ++          G + LQKKY +VI ++RG+GL++G++L +
Sbjct  289  LACAAALATLEIIEDEDLLQNAARLGAYLKEGLEDLQKKY-EVIKDVRGKGLMIGIELKE  347

Query  351  SHTTKASDLVTAARERGLLIITAGEGCLRFVPPLTITEEQIKTSLKILEQA  401
              T     ++ AA E G+LI+  G+  +R +PPLTIT+EQI   L+I+ +A
Sbjct  348  DVTVNPP-ILLAALEAGVLILPCGDNVIRLLPPLTITDEQIDEGLEIISKA  397



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500176124


Query= TCONS_00018268

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460570 pfam02487, CLN3, CLN3 protein. This is a family of pro...  575     0.0  


>CDD:460570 pfam02487, CLN3, CLN3 protein.  This is a family of proteins 
from the CLN3 gene. A mis-sense mutation of glutamic acid (E) 
to lysine (K) at position 295 in the human protein has been 
implicated in Juvenile neuronal ceroid lipofuscinosis (Batten 
disease). Batten disease is characterized by the accumulation 
of autofluorescent material in the lysosomes of most cells. 
Members of this family are transmembrane proteins functional 
in pre-vacuolar compartments. The protein in Sch.pombe 
is found to be localized to the vacuolar membrane, and a lack 
of functional protein clearly affects the size and pH of 
the vacuole. Thus the protein is necessary for vacuolar homeostasis. 
It is important for localization of late endosomal/lysosomal 
compartments, and it interacts with motor components 
driving both plus and minus end microtubular trafficking: 
tubulin, dynactin, dynein and kinesin-2.
Length=383

 Score = 575 bits (1486),  Expect = 0.0, Method: Composition-based stats.
 Identities = 234/406 (58%), Positives = 282/406 (69%), Gaps = 24/406 (6%)

Query  44   VAFWLFGLINNVLYVVILSAALDLVGPSVPKGVVLLADVIPSFATKLIAPYFIHMVPYPV  103
            VAFWLFGL NNVLYVVILSAALD+VGPS PKGVVLLAD++PS   KL AP+FIH VPY V
Sbjct  1    VAFWLFGLCNNVLYVVILSAALDIVGPSTPKGVVLLADILPSLLIKLTAPFFIHRVPYSV  60

Query  104  RIIIFVFLSAAGMLLVALSPPYTDGGTIATKLAGIVLASLSSGGGELSFVGLTHFYGPFS  163
            RI++ V LSAAGMLLVA SP       +  KL G+VLASLSSG GEL+F+ LTH+YG FS
Sbjct  61   RILLCVLLSAAGMLLVAFSPS------LWVKLLGVVLASLSSGLGELTFLQLTHYYGSFS  114

Query  164  LAAWGSGTGAAGLVGAGAYALATTSLGLSVKATLLASSCLPAVMVVSFFMVLPRSPLQPI  223
            LA W SGTG AGLVGAG YAL T+ LGLSV+ TLL S  LP +M++S+F +LP  PL+  
Sbjct  115  LAGWSSGTGGAGLVGAGLYALLTSILGLSVRTTLLLSLVLPFLMLLSYFFLLPHPPLRYS  174

Query  224  SAAYAGYRAVEEREELAEEREFMEGDRDATFDEQERLLGASVLSDQSKKAGWQRFKRDLK  283
            S                               E      +   S +S  +    F+  L+
Sbjct  175  SRLPES-----------------TESESDGLLEYTPASASEDASAESSSSLKLHFREKLR  217

Query  284  RVRGLFFPFMLPLLLVYVAEYTINQGVSPTLLFPLDESPFAHFRAFYPAYNAIYQVGVFI  343
            R++ LF P+MLPL LVY+AEYTINQGVSPTLLFPLDESPF  +R  Y  Y  +YQ+GVFI
Sbjct  218  RIKPLFLPYMLPLFLVYLAEYTINQGVSPTLLFPLDESPFLSYRDQYRWYQVLYQLGVFI  277

Query  344  SRSSTPFFRIHDLYLPSFLQILNLVLLTLQAVFNF-IPSVYIIFIIIFWEGLLGGLVYVN  402
            SRSS PF RI +LYL S LQ LNLVLLTLQ++++F IPS++IIF++IF+EGLLGG  YVN
Sbjct  278  SRSSVPFIRIRNLYLLSVLQFLNLVLLTLQSLYDFFIPSIWIIFLLIFYEGLLGGAAYVN  337

Query  403  TFAEIGDRVPKEDREFSLGATTVSDAAGICIAGFVSMVFEVWLCDW  448
            TF  I + VP E+REFSLGA +VSD+ GI +AG ++M  E  LC  
Sbjct  338  TFYNISEEVPPEEREFSLGAVSVSDSLGILLAGLLAMPLENALCSL  383



Lambda      K        H        a         alpha
   0.326    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00018267

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460570 pfam02487, CLN3, CLN3 protein. This is a family of pro...  575     0.0  


>CDD:460570 pfam02487, CLN3, CLN3 protein.  This is a family of proteins 
from the CLN3 gene. A mis-sense mutation of glutamic acid (E) 
to lysine (K) at position 295 in the human protein has been 
implicated in Juvenile neuronal ceroid lipofuscinosis (Batten 
disease). Batten disease is characterized by the accumulation 
of autofluorescent material in the lysosomes of most cells. 
Members of this family are transmembrane proteins functional 
in pre-vacuolar compartments. The protein in Sch.pombe 
is found to be localized to the vacuolar membrane, and a lack 
of functional protein clearly affects the size and pH of 
the vacuole. Thus the protein is necessary for vacuolar homeostasis. 
It is important for localization of late endosomal/lysosomal 
compartments, and it interacts with motor components 
driving both plus and minus end microtubular trafficking: 
tubulin, dynactin, dynein and kinesin-2.
Length=383

 Score = 575 bits (1486),  Expect = 0.0, Method: Composition-based stats.
 Identities = 234/406 (58%), Positives = 282/406 (69%), Gaps = 24/406 (6%)

Query  44   VAFWLFGLINNVLYVVILSAALDLVGPSVPKGVVLLADVIPSFATKLIAPYFIHMVPYPV  103
            VAFWLFGL NNVLYVVILSAALD+VGPS PKGVVLLAD++PS   KL AP+FIH VPY V
Sbjct  1    VAFWLFGLCNNVLYVVILSAALDIVGPSTPKGVVLLADILPSLLIKLTAPFFIHRVPYSV  60

Query  104  RIIIFVFLSAAGMLLVALSPPYTDGGTIATKLAGIVLASLSSGGGELSFVGLTHFYGPFS  163
            RI++ V LSAAGMLLVA SP       +  KL G+VLASLSSG GEL+F+ LTH+YG FS
Sbjct  61   RILLCVLLSAAGMLLVAFSPS------LWVKLLGVVLASLSSGLGELTFLQLTHYYGSFS  114

Query  164  LAAWGSGTGAAGLVGAGAYALATTSLGLSVKATLLASSCLPAVMVVSFFMVLPRSPLQPI  223
            LA W SGTG AGLVGAG YAL T+ LGLSV+ TLL S  LP +M++S+F +LP  PL+  
Sbjct  115  LAGWSSGTGGAGLVGAGLYALLTSILGLSVRTTLLLSLVLPFLMLLSYFFLLPHPPLRYS  174

Query  224  SAAYAGYRAVEEREELAEEREFMEGDRDATFDEQERLLGASVLSDQSKKAGWQRFKRDLK  283
            S                               E      +   S +S  +    F+  L+
Sbjct  175  SRLPES-----------------TESESDGLLEYTPASASEDASAESSSSLKLHFREKLR  217

Query  284  RVRGLFFPFMLPLLLVYVAEYTINQGVSPTLLFPLDESPFAHFRAFYPAYNAIYQVGVFI  343
            R++ LF P+MLPL LVY+AEYTINQGVSPTLLFPLDESPF  +R  Y  Y  +YQ+GVFI
Sbjct  218  RIKPLFLPYMLPLFLVYLAEYTINQGVSPTLLFPLDESPFLSYRDQYRWYQVLYQLGVFI  277

Query  344  SRSSTPFFRIHDLYLPSFLQILNLVLLTLQAVFNF-IPSVYIIFIIIFWEGLLGGLVYVN  402
            SRSS PF RI +LYL S LQ LNLVLLTLQ++++F IPS++IIF++IF+EGLLGG  YVN
Sbjct  278  SRSSVPFIRIRNLYLLSVLQFLNLVLLTLQSLYDFFIPSIWIIFLLIFYEGLLGGAAYVN  337

Query  403  TFAEIGDRVPKEDREFSLGATTVSDAAGICIAGFVSMVFEVWLCDW  448
            TF  I + VP E+REFSLGA +VSD+ GI +AG ++M  E  LC  
Sbjct  338  TFYNISEEVPPEEREFSLGAVSVSDSLGILLAGLLAMPLENALCSL  383



Lambda      K        H        a         alpha
   0.326    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00012369

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460570 pfam02487, CLN3, CLN3 protein. This is a family of pro...  575     0.0  


>CDD:460570 pfam02487, CLN3, CLN3 protein.  This is a family of proteins 
from the CLN3 gene. A mis-sense mutation of glutamic acid (E) 
to lysine (K) at position 295 in the human protein has been 
implicated in Juvenile neuronal ceroid lipofuscinosis (Batten 
disease). Batten disease is characterized by the accumulation 
of autofluorescent material in the lysosomes of most cells. 
Members of this family are transmembrane proteins functional 
in pre-vacuolar compartments. The protein in Sch.pombe 
is found to be localized to the vacuolar membrane, and a lack 
of functional protein clearly affects the size and pH of 
the vacuole. Thus the protein is necessary for vacuolar homeostasis. 
It is important for localization of late endosomal/lysosomal 
compartments, and it interacts with motor components 
driving both plus and minus end microtubular trafficking: 
tubulin, dynactin, dynein and kinesin-2.
Length=383

 Score = 575 bits (1486),  Expect = 0.0, Method: Composition-based stats.
 Identities = 234/406 (58%), Positives = 282/406 (69%), Gaps = 24/406 (6%)

Query  44   VAFWLFGLINNVLYVVILSAALDLVGPSVPKGVVLLADVIPSFATKLIAPYFIHMVPYPV  103
            VAFWLFGL NNVLYVVILSAALD+VGPS PKGVVLLAD++PS   KL AP+FIH VPY V
Sbjct  1    VAFWLFGLCNNVLYVVILSAALDIVGPSTPKGVVLLADILPSLLIKLTAPFFIHRVPYSV  60

Query  104  RIIIFVFLSAAGMLLVALSPPYTDGGTIATKLAGIVLASLSSGGGELSFVGLTHFYGPFS  163
            RI++ V LSAAGMLLVA SP       +  KL G+VLASLSSG GEL+F+ LTH+YG FS
Sbjct  61   RILLCVLLSAAGMLLVAFSPS------LWVKLLGVVLASLSSGLGELTFLQLTHYYGSFS  114

Query  164  LAAWGSGTGAAGLVGAGAYALATTSLGLSVKATLLASSCLPAVMVVSFFMVLPRSPLQPI  223
            LA W SGTG AGLVGAG YAL T+ LGLSV+ TLL S  LP +M++S+F +LP  PL+  
Sbjct  115  LAGWSSGTGGAGLVGAGLYALLTSILGLSVRTTLLLSLVLPFLMLLSYFFLLPHPPLRYS  174

Query  224  SAAYAGYRAVEEREELAEEREFMEGDRDATFDEQERLLGASVLSDQSKKAGWQRFKRDLK  283
            S                               E      +   S +S  +    F+  L+
Sbjct  175  SRLPES-----------------TESESDGLLEYTPASASEDASAESSSSLKLHFREKLR  217

Query  284  RVRGLFFPFMLPLLLVYVAEYTINQGVSPTLLFPLDESPFAHFRAFYPAYNAIYQVGVFI  343
            R++ LF P+MLPL LVY+AEYTINQGVSPTLLFPLDESPF  +R  Y  Y  +YQ+GVFI
Sbjct  218  RIKPLFLPYMLPLFLVYLAEYTINQGVSPTLLFPLDESPFLSYRDQYRWYQVLYQLGVFI  277

Query  344  SRSSTPFFRIHDLYLPSFLQILNLVLLTLQAVFNF-IPSVYIIFIIIFWEGLLGGLVYVN  402
            SRSS PF RI +LYL S LQ LNLVLLTLQ++++F IPS++IIF++IF+EGLLGG  YVN
Sbjct  278  SRSSVPFIRIRNLYLLSVLQFLNLVLLTLQSLYDFFIPSIWIIFLLIFYEGLLGGAAYVN  337

Query  403  TFAEIGDRVPKEDREFSLGATTVSDAAGICIAGFVSMVFEVWLCDW  448
            TF  I + VP E+REFSLGA +VSD+ GI +AG ++M  E  LC  
Sbjct  338  TFYNISEEVPPEEREFSLGAVSVSDSLGILLAGLLAMPLENALCSL  383



Lambda      K        H        a         alpha
   0.326    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00018270

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460570 pfam02487, CLN3, CLN3 protein. This is a family of pro...  570     0.0  


>CDD:460570 pfam02487, CLN3, CLN3 protein.  This is a family of proteins 
from the CLN3 gene. A mis-sense mutation of glutamic acid (E) 
to lysine (K) at position 295 in the human protein has been 
implicated in Juvenile neuronal ceroid lipofuscinosis (Batten 
disease). Batten disease is characterized by the accumulation 
of autofluorescent material in the lysosomes of most cells. 
Members of this family are transmembrane proteins functional 
in pre-vacuolar compartments. The protein in Sch.pombe 
is found to be localized to the vacuolar membrane, and a lack 
of functional protein clearly affects the size and pH of 
the vacuole. Thus the protein is necessary for vacuolar homeostasis. 
It is important for localization of late endosomal/lysosomal 
compartments, and it interacts with motor components 
driving both plus and minus end microtubular trafficking: 
tubulin, dynactin, dynein and kinesin-2.
Length=383

 Score = 570 bits (1472),  Expect = 0.0, Method: Composition-based stats.
 Identities = 234/406 (58%), Positives = 282/406 (69%), Gaps = 24/406 (6%)

Query  32   VAFWLFGLINNVLYVVILSAALDLVGPSVPKGVVLLADVIPSFATKLIAPYFIHMVPYPV  91
            VAFWLFGL NNVLYVVILSAALD+VGPS PKGVVLLAD++PS   KL AP+FIH VPY V
Sbjct  1    VAFWLFGLCNNVLYVVILSAALDIVGPSTPKGVVLLADILPSLLIKLTAPFFIHRVPYSV  60

Query  92   RIIIFVFLSAAGMLLVALSPPYTDGGTIATKLAGIVLASLSSGGGELSFVGLTHFYGPFS  151
            RI++ V LSAAGMLLVA SP       +  KL G+VLASLSSG GEL+F+ LTH+YG FS
Sbjct  61   RILLCVLLSAAGMLLVAFSPS------LWVKLLGVVLASLSSGLGELTFLQLTHYYGSFS  114

Query  152  LAAWGSGTGAAGLVGAGAYALATTSLGLSVKATLLASSCLPAVMVVSFFMVLPRSPLQPI  211
            LA W SGTG AGLVGAG YAL T+ LGLSV+ TLL S  LP +M++S+F +LP  PL+  
Sbjct  115  LAGWSSGTGGAGLVGAGLYALLTSILGLSVRTTLLLSLVLPFLMLLSYFFLLPHPPLRYS  174

Query  212  SAAYAGYRAVEEREELAEEREFMEGDRDATFDEQERLLGASVLSDQSKKAGWQRFKRDLK  271
            S                               E      +   S +S  +    F+  L+
Sbjct  175  SRLPES-----------------TESESDGLLEYTPASASEDASAESSSSLKLHFREKLR  217

Query  272  RVRGLFFPFMLPLLLVYVAEYTINQGVSPTLLFPLDESPFAHFRAFYPAYNAIYQVGVFI  331
            R++ LF P+MLPL LVY+AEYTINQGVSPTLLFPLDESPF  +R  Y  Y  +YQ+GVFI
Sbjct  218  RIKPLFLPYMLPLFLVYLAEYTINQGVSPTLLFPLDESPFLSYRDQYRWYQVLYQLGVFI  277

Query  332  SRSSTPFFRIHDLYLPSFLQILNLVLLTLQAVFNF-IPSVYIIFIIIFWEGLLGGLVYVN  390
            SRSS PF RI +LYL S LQ LNLVLLTLQ++++F IPS++IIF++IF+EGLLGG  YVN
Sbjct  278  SRSSVPFIRIRNLYLLSVLQFLNLVLLTLQSLYDFFIPSIWIIFLLIFYEGLLGGAAYVN  337

Query  391  TFAEIGDRVPKEDREFSLGATTVSDAAGICIAGFVSMVFEVWLCDW  436
            TF  I + VP E+REFSLGA +VSD+ GI +AG ++M  E  LC  
Sbjct  338  TFYNISEEVPPEEREFSLGAVSVSDSLGILLAGLLAMPLENALCSL  383



Lambda      K        H        a         alpha
   0.327    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00018269

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460570 pfam02487, CLN3, CLN3 protein. This is a family of pro...  575     0.0  


>CDD:460570 pfam02487, CLN3, CLN3 protein.  This is a family of proteins 
from the CLN3 gene. A mis-sense mutation of glutamic acid (E) 
to lysine (K) at position 295 in the human protein has been 
implicated in Juvenile neuronal ceroid lipofuscinosis (Batten 
disease). Batten disease is characterized by the accumulation 
of autofluorescent material in the lysosomes of most cells. 
Members of this family are transmembrane proteins functional 
in pre-vacuolar compartments. The protein in Sch.pombe 
is found to be localized to the vacuolar membrane, and a lack 
of functional protein clearly affects the size and pH of 
the vacuole. Thus the protein is necessary for vacuolar homeostasis. 
It is important for localization of late endosomal/lysosomal 
compartments, and it interacts with motor components 
driving both plus and minus end microtubular trafficking: 
tubulin, dynactin, dynein and kinesin-2.
Length=383

 Score = 575 bits (1486),  Expect = 0.0, Method: Composition-based stats.
 Identities = 234/406 (58%), Positives = 282/406 (69%), Gaps = 24/406 (6%)

Query  44   VAFWLFGLINNVLYVVILSAALDLVGPSVPKGVVLLADVIPSFATKLIAPYFIHMVPYPV  103
            VAFWLFGL NNVLYVVILSAALD+VGPS PKGVVLLAD++PS   KL AP+FIH VPY V
Sbjct  1    VAFWLFGLCNNVLYVVILSAALDIVGPSTPKGVVLLADILPSLLIKLTAPFFIHRVPYSV  60

Query  104  RIIIFVFLSAAGMLLVALSPPYTDGGTIATKLAGIVLASLSSGGGELSFVGLTHFYGPFS  163
            RI++ V LSAAGMLLVA SP       +  KL G+VLASLSSG GEL+F+ LTH+YG FS
Sbjct  61   RILLCVLLSAAGMLLVAFSPS------LWVKLLGVVLASLSSGLGELTFLQLTHYYGSFS  114

Query  164  LAAWGSGTGAAGLVGAGAYALATTSLGLSVKATLLASSCLPAVMVVSFFMVLPRSPLQPI  223
            LA W SGTG AGLVGAG YAL T+ LGLSV+ TLL S  LP +M++S+F +LP  PL+  
Sbjct  115  LAGWSSGTGGAGLVGAGLYALLTSILGLSVRTTLLLSLVLPFLMLLSYFFLLPHPPLRYS  174

Query  224  SAAYAGYRAVEEREELAEEREFMEGDRDATFDEQERLLGASVLSDQSKKAGWQRFKRDLK  283
            S                               E      +   S +S  +    F+  L+
Sbjct  175  SRLPES-----------------TESESDGLLEYTPASASEDASAESSSSLKLHFREKLR  217

Query  284  RVRGLFFPFMLPLLLVYVAEYTINQGVSPTLLFPLDESPFAHFRAFYPAYNAIYQVGVFI  343
            R++ LF P+MLPL LVY+AEYTINQGVSPTLLFPLDESPF  +R  Y  Y  +YQ+GVFI
Sbjct  218  RIKPLFLPYMLPLFLVYLAEYTINQGVSPTLLFPLDESPFLSYRDQYRWYQVLYQLGVFI  277

Query  344  SRSSTPFFRIHDLYLPSFLQILNLVLLTLQAVFNF-IPSVYIIFIIIFWEGLLGGLVYVN  402
            SRSS PF RI +LYL S LQ LNLVLLTLQ++++F IPS++IIF++IF+EGLLGG  YVN
Sbjct  278  SRSSVPFIRIRNLYLLSVLQFLNLVLLTLQSLYDFFIPSIWIIFLLIFYEGLLGGAAYVN  337

Query  403  TFAEIGDRVPKEDREFSLGATTVSDAAGICIAGFVSMVFEVWLCDW  448
            TF  I + VP E+REFSLGA +VSD+ GI +AG ++M  E  LC  
Sbjct  338  TFYNISEEVPPEEREFSLGAVSVSDSLGILLAGLLAMPLENALCSL  383



Lambda      K        H        a         alpha
   0.326    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00012370

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460570 pfam02487, CLN3, CLN3 protein. This is a family of pro...  575     0.0  


>CDD:460570 pfam02487, CLN3, CLN3 protein.  This is a family of proteins 
from the CLN3 gene. A mis-sense mutation of glutamic acid (E) 
to lysine (K) at position 295 in the human protein has been 
implicated in Juvenile neuronal ceroid lipofuscinosis (Batten 
disease). Batten disease is characterized by the accumulation 
of autofluorescent material in the lysosomes of most cells. 
Members of this family are transmembrane proteins functional 
in pre-vacuolar compartments. The protein in Sch.pombe 
is found to be localized to the vacuolar membrane, and a lack 
of functional protein clearly affects the size and pH of 
the vacuole. Thus the protein is necessary for vacuolar homeostasis. 
It is important for localization of late endosomal/lysosomal 
compartments, and it interacts with motor components 
driving both plus and minus end microtubular trafficking: 
tubulin, dynactin, dynein and kinesin-2.
Length=383

 Score = 575 bits (1486),  Expect = 0.0, Method: Composition-based stats.
 Identities = 234/406 (58%), Positives = 282/406 (69%), Gaps = 24/406 (6%)

Query  44   VAFWLFGLINNVLYVVILSAALDLVGPSVPKGVVLLADVIPSFATKLIAPYFIHMVPYPV  103
            VAFWLFGL NNVLYVVILSAALD+VGPS PKGVVLLAD++PS   KL AP+FIH VPY V
Sbjct  1    VAFWLFGLCNNVLYVVILSAALDIVGPSTPKGVVLLADILPSLLIKLTAPFFIHRVPYSV  60

Query  104  RIIIFVFLSAAGMLLVALSPPYTDGGTIATKLAGIVLASLSSGGGELSFVGLTHFYGPFS  163
            RI++ V LSAAGMLLVA SP       +  KL G+VLASLSSG GEL+F+ LTH+YG FS
Sbjct  61   RILLCVLLSAAGMLLVAFSPS------LWVKLLGVVLASLSSGLGELTFLQLTHYYGSFS  114

Query  164  LAAWGSGTGAAGLVGAGAYALATTSLGLSVKATLLASSCLPAVMVVSFFMVLPRSPLQPI  223
            LA W SGTG AGLVGAG YAL T+ LGLSV+ TLL S  LP +M++S+F +LP  PL+  
Sbjct  115  LAGWSSGTGGAGLVGAGLYALLTSILGLSVRTTLLLSLVLPFLMLLSYFFLLPHPPLRYS  174

Query  224  SAAYAGYRAVEEREELAEEREFMEGDRDATFDEQERLLGASVLSDQSKKAGWQRFKRDLK  283
            S                               E      +   S +S  +    F+  L+
Sbjct  175  SRLPES-----------------TESESDGLLEYTPASASEDASAESSSSLKLHFREKLR  217

Query  284  RVRGLFFPFMLPLLLVYVAEYTINQGVSPTLLFPLDESPFAHFRAFYPAYNAIYQVGVFI  343
            R++ LF P+MLPL LVY+AEYTINQGVSPTLLFPLDESPF  +R  Y  Y  +YQ+GVFI
Sbjct  218  RIKPLFLPYMLPLFLVYLAEYTINQGVSPTLLFPLDESPFLSYRDQYRWYQVLYQLGVFI  277

Query  344  SRSSTPFFRIHDLYLPSFLQILNLVLLTLQAVFNF-IPSVYIIFIIIFWEGLLGGLVYVN  402
            SRSS PF RI +LYL S LQ LNLVLLTLQ++++F IPS++IIF++IF+EGLLGG  YVN
Sbjct  278  SRSSVPFIRIRNLYLLSVLQFLNLVLLTLQSLYDFFIPSIWIIFLLIFYEGLLGGAAYVN  337

Query  403  TFAEIGDRVPKEDREFSLGATTVSDAAGICIAGFVSMVFEVWLCDW  448
            TF  I + VP E+REFSLGA +VSD+ GI +AG ++M  E  LC  
Sbjct  338  TFYNISEEVPPEEREFSLGAVSVSDSLGILLAGLLAMPLENALCSL  383



Lambda      K        H        a         alpha
   0.326    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00012372

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395148 pfam00202, Aminotran_3, Aminotransferase class-III         111     9e-30


>CDD:395148 pfam00202, Aminotran_3, Aminotransferase class-III.  
Length=397

 Score = 111 bits (280),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 48/130 (37%), Positives = 72/130 (55%), Gaps = 10/130 (8%)

Query  82   VRPTPVMI-KGQGCYVWDMENRRYLDLTAGIAVNSLGHCDPEIAKIIAEQVETLIHAS-N  139
            V P  + I K +GCY+ D++  RYLD  +GIAV +LGHC P +   +  Q + L H S  
Sbjct  6    VDPILLFITKAKGCYLTDVDGNRYLDFYSGIAVTNLGHCHPALVAAVKTQADKLSHVSFG  65

Query  140  LYHNAWTGALSKLLVALTHQSGAMRDASQVFISNSGTEANEAAIKFARKVGRSLEPSGAK  199
             + N     L++ L+ LT          +VF+ NSG+EANE A+K ARK  R    +G +
Sbjct  66   AFTNEPALDLAEKLLKLT-------PGDRVFLMNSGSEANETAVKLARKWYREKGATG-R  117

Query  200  HEFVSFHNSF  209
             + ++F  +F
Sbjct  118  TKIIAFSGAF  127



Lambda      K        H        a         alpha
   0.317    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00012373

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395148 pfam00202, Aminotran_3, Aminotransferase class-III         377     8e-129


>CDD:395148 pfam00202, Aminotran_3, Aminotransferase class-III.  
Length=397

 Score = 377 bits (971),  Expect = 8e-129, Method: Composition-based stats.
 Identities = 168/411 (41%), Positives = 235/411 (57%), Gaps = 34/411 (8%)

Query  82   VRPTPVMI-KGQGCYVWDMENRRYLDLTAGIAVNSLGHCDPEIAKIIAEQAETLIHAS-N  139
            V P  + I K +GCY+ D++  RYLD  +GIAV +LGHC P +   +  QA+ L H S  
Sbjct  6    VDPILLFITKAKGCYLTDVDGNRYLDFYSGIAVTNLGHCHPALVAAVKTQADKLSHVSFG  65

Query  140  LYHNAWTGALSKLLVALTHQSGAMRDASQVFISNSGTEANEAAIKFARKVGRSLEPSGAK  199
             + N     L++ L+ LT          +VF+ NSG+EANE A+K ARK  R    +G +
Sbjct  66   AFTNEPALDLAEKLLKLT-------PGDRVFLMNSGSEANETAVKLARKWYREKGATG-R  117

Query  200  HEFVSFHNSFHGRTMGALSAT-PNPKYQTPFSPMVPGFKYGNYND------------IEQ  246
             + ++F  +FHGRTMGALS T   PKY+T F P +PGF    Y D            +E 
Sbjct  118  TKIIAFSGAFHGRTMGALSVTGSKPKYKTGFGPFLPGFPRLPYPDPEFLKEQRCLEELEA  177

Query  247  LQELITDKSCGVIVEPIQGEGGVHTATPEFLAALRKRCDEVGAVLIFDEIQCGLSRTGSF  306
            L  +  D+   VIVEPIQGEGGV+  +P FLA LR  C + G +LI DE+Q G  RTG  
Sbjct  178  LIAVKDDEVAAVIVEPIQGEGGVNPPSPGFLAGLRAICKKHGVLLIADEVQTGFGRTGKL  237

Query  307  WAHAHPSLKPTSGEAAHPDILTTAKALGNGIPIGATIVSGKTVAEHIKTGDHGTTFGGNP  366
            +AH H  +         PDI+T AKAL  G P+ AT+   + V +    G HG TFGGNP
Sbjct  238  FAHEHWGV--------PPDIMTFAKALTGGFPLAATLGRAE-VMQAFAPGSHGGTFGGNP  288

Query  367  LACRVAHHIVERLASPELQKSVEAKSLLFVSGFQSLQKKYPDVISEIRGRGLILGVQLSK  426
            LAC  A   +E +   +L ++          G + LQKKY +VI ++RG+GL++G++L +
Sbjct  289  LACAAALATLEIIEDEDLLQNAARLGAYLKEGLEDLQKKY-EVIKDVRGKGLMIGIELKE  347

Query  427  SHTTKASDLVTAARERGLLIITAGEGCLRFVPPLTITEEQIKTSLKILEQA  477
              T     ++ AA E G+LI+  G+  +R +PPLTIT+EQI   L+I+ +A
Sbjct  348  DVTVNPP-ILLAALEAGVLILPCGDNVIRLLPPLTITDEQIDEGLEIISKA  397



Lambda      K        H        a         alpha
   0.317    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00018271

Length=772
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  118     7e-31


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 118 bits (298),  Expect = 7e-31, Method: Composition-based stats.
 Identities = 76/337 (23%), Positives = 105/337 (31%), Gaps = 135/337 (40%)

Query  220  GGGYVAMNPRNSEDRLLA-WAGKTKLPILSLDYKKAPEYPYPYALNECYDVYHMIITTRG  278
            GGG+V  +  ++ DRL    A +    ++S+DY+ APE+P+P A ++ Y     +     
Sbjct  6    GGGFVLGSA-DTHDRLCRRLAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLAEQA-  63

Query  279  RCLGLSGVTRPRIVVTGDSAGGNLAVGTVLMILQSGTEDVMPRPNGLVLAYPSLNMRVES  338
                  G    RI V GDSAGGNLA    L     G    +P+P G VL YP  ++R ES
Sbjct  64   ---AELGADPSRIAVAGDSAGGNLAAAVALRARDEG----LPKPAGQVLIYPGTDLRTES  116

Query  339  WMTEEQMSLIQDKSARRTNKNILQRKNMDYQRLTPFASPGPSTEELRQEFLSDAGLEAGD  398
                                                               S    E  D
Sbjct  117  P--------------------------------------------------SYLAREFAD  126

Query  399  LGEKTSKKLAEISNQDSLAAQTAALVEHQPKQIRTRLAVSSMISYVHDRILTPEMMRAMI  458
                                                             +LT   M    
Sbjct  127  -----------------------------------------------GPLLTRAAMDWFW  139

Query  459  ILYIGPHNRPDFSTDFLLSPVLAPESLLTRFPKTYFITGERDPLVDDTVIFAGRLRQAKL  518
             LY+   +R     D L SP+ A +  L+  P    +  E DPL D+   +A RLR A  
Sbjct  140  RLYLPGADR----DDPLASPLFASD--LSGLPPALVVVAEFDPLRDEGEAYAERLRAA--  191

Query  519  HQFRERQELGLEKSHREFNEKDHVEVSLLPGVSHGFL  555
                                   VE+   PG+ HGF 
Sbjct  192  --------------------GVPVELIEYPGMPHGFH  208



Lambda      K        H        a         alpha
   0.318    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 986593056


Query= TCONS_00012374

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460570 pfam02487, CLN3, CLN3 protein. This is a family of pro...  570     0.0  


>CDD:460570 pfam02487, CLN3, CLN3 protein.  This is a family of proteins 
from the CLN3 gene. A mis-sense mutation of glutamic acid (E) 
to lysine (K) at position 295 in the human protein has been 
implicated in Juvenile neuronal ceroid lipofuscinosis (Batten 
disease). Batten disease is characterized by the accumulation 
of autofluorescent material in the lysosomes of most cells. 
Members of this family are transmembrane proteins functional 
in pre-vacuolar compartments. The protein in Sch.pombe 
is found to be localized to the vacuolar membrane, and a lack 
of functional protein clearly affects the size and pH of 
the vacuole. Thus the protein is necessary for vacuolar homeostasis. 
It is important for localization of late endosomal/lysosomal 
compartments, and it interacts with motor components 
driving both plus and minus end microtubular trafficking: 
tubulin, dynactin, dynein and kinesin-2.
Length=383

 Score = 570 bits (1472),  Expect = 0.0, Method: Composition-based stats.
 Identities = 234/406 (58%), Positives = 282/406 (69%), Gaps = 24/406 (6%)

Query  32   VAFWLFGLINNVLYVVILSAALDLVGPSVPKGVVLLADVIPSFATKLIAPYFIHMVPYPV  91
            VAFWLFGL NNVLYVVILSAALD+VGPS PKGVVLLAD++PS   KL AP+FIH VPY V
Sbjct  1    VAFWLFGLCNNVLYVVILSAALDIVGPSTPKGVVLLADILPSLLIKLTAPFFIHRVPYSV  60

Query  92   RIIIFVFLSAAGMLLVALSPPYTDGGTIATKLAGIVLASLSSGGGELSFVGLTHFYGPFS  151
            RI++ V LSAAGMLLVA SP       +  KL G+VLASLSSG GEL+F+ LTH+YG FS
Sbjct  61   RILLCVLLSAAGMLLVAFSPS------LWVKLLGVVLASLSSGLGELTFLQLTHYYGSFS  114

Query  152  LAAWGSGTGAAGLVGAGAYALATTSLGLSVKATLLASSCLPAVMVVSFFMVLPRSPLQPI  211
            LA W SGTG AGLVGAG YAL T+ LGLSV+ TLL S  LP +M++S+F +LP  PL+  
Sbjct  115  LAGWSSGTGGAGLVGAGLYALLTSILGLSVRTTLLLSLVLPFLMLLSYFFLLPHPPLRYS  174

Query  212  SAAYAGYRAVEEREELAEEREFMEGDRDATFDEQERLLGASVLSDQSKKAGWQRFKRDLK  271
            S                               E      +   S +S  +    F+  L+
Sbjct  175  SRLPES-----------------TESESDGLLEYTPASASEDASAESSSSLKLHFREKLR  217

Query  272  RVRGLFFPFMLPLLLVYVAEYTINQGVSPTLLFPLDESPFAHFRAFYPAYNAIYQVGVFI  331
            R++ LF P+MLPL LVY+AEYTINQGVSPTLLFPLDESPF  +R  Y  Y  +YQ+GVFI
Sbjct  218  RIKPLFLPYMLPLFLVYLAEYTINQGVSPTLLFPLDESPFLSYRDQYRWYQVLYQLGVFI  277

Query  332  SRSSTPFFRIHDLYLPSFLQILNLVLLTLQAVFNF-IPSVYIIFIIIFWEGLLGGLVYVN  390
            SRSS PF RI +LYL S LQ LNLVLLTLQ++++F IPS++IIF++IF+EGLLGG  YVN
Sbjct  278  SRSSVPFIRIRNLYLLSVLQFLNLVLLTLQSLYDFFIPSIWIIFLLIFYEGLLGGAAYVN  337

Query  391  TFAEIGDRVPKEDREFSLGATTVSDAAGICIAGFVSMVFEVWLCDW  436
            TF  I + VP E+REFSLGA +VSD+ GI +AG ++M  E  LC  
Sbjct  338  TFYNISEEVPPEEREFSLGAVSVSDSLGILLAGLLAMPLENALCSL  383



Lambda      K        H        a         alpha
   0.327    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00018272

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            84.4    2e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 84.4 bits (209),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 148/390 (38%), Gaps = 48/390 (12%)

Query  33   LGLSTMVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKG  91
            L L+  + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  92   RYMPLIVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRG  151
            R   L++ +  F +       +  L  L +LR   G         A A  AD F PE+RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  152  IAIVMFCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQP  211
             A+ +      +G    P +GG   + S  GWR    I  IL     +LL++        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  212  VILARKADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASF  271
                 +  RL                           L +  K L+ DP++  +     F
Sbjct  179  RPKPAEEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF  212

Query  272  VYGLLYLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNG  331
              G  +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R      
Sbjct  213  --GFAFFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR------  261

Query  332  GVMMPEWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLA  391
              +    RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A
Sbjct  262  --LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNA  314

Query  392  YLVE-ARPQKSASAVAAHTFLRSVAGGVFP  420
             + + A  ++  +A   +    S+ G + P
Sbjct  315  LVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.329    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00012377

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            75.9    1e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 75.9 bits (187),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 145/385 (38%), Gaps = 48/385 (12%)

Query  1    MVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKGRYMPL  59
             + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  GR   L
Sbjct  6    FLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVL  65

Query  60   IVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRGIAIVM  119
            ++ +  F +       +  L  L +LR   G         A A  AD F PE+RG A+ +
Sbjct  66   LIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGL  125

Query  120  FCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQPVILAR  179
                  +G    P +GG   + S  GWR    I  IL     +LL++             
Sbjct  126  VSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPA  183

Query  180  KADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASFVYGLL  239
            +  RL                           L +  K L+ DP++  +     F  G  
Sbjct  184  EEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF--GFA  215

Query  240  YLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNGGVMMP  299
            +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R        +  
Sbjct  216  FFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR--------LGR  264

Query  300  EWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLAYLVE-  358
              RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A + + 
Sbjct  265  RRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNALVSDL  319

Query  359  ARPQKSASAVAAHTFLRSVAGGVFP  383
            A  ++  +A   +    S+ G + P
Sbjct  320  APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.329    0.145    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00012376

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            84.4    2e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 84.4 bits (209),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 148/390 (38%), Gaps = 48/390 (12%)

Query  33   LGLSTMVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKG  91
            L L+  + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  92   RYMPLIVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRG  151
            R   L++ +  F +       +  L  L +LR   G         A A  AD F PE+RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  152  IAIVMFCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQP  211
             A+ +      +G    P +GG   + S  GWR    I  IL     +LL++        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  212  VILARKADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASF  271
                 +  RL                           L +  K L+ DP++  +     F
Sbjct  179  RPKPAEEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF  212

Query  272  VYGLLYLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNG  331
              G  +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R      
Sbjct  213  --GFAFFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR------  261

Query  332  GVMMPEWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLA  391
              +    RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A
Sbjct  262  --LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNA  314

Query  392  YLVE-ARPQKSASAVAAHTFLRSVAGGVFP  420
             + + A  ++  +A   +    S+ G + P
Sbjct  315  LVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.329    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00012378

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            81.7    9e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 81.7 bits (202),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 83/369 (22%), Positives = 140/369 (38%), Gaps = 47/369 (13%)

Query  33   LGLSTMVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKG  91
            L L+  + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  92   RYMPLIVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRG  151
            R   L++ +  F +       +  L  L +LR   G         A A  AD F PE+RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  152  IAIVMFCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQP  211
             A+ +      +G    P +GG   + S  GWR    I  IL     +LL++        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  212  VILARKADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASF  271
                 +  RL                           L +  K L+ DP++  +     F
Sbjct  179  RPKPAEEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF  212

Query  272  VYGLLYLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNG  331
              G  +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R      
Sbjct  213  --GFAFFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR------  261

Query  332  GVMMPEWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLA  391
              +    RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A
Sbjct  262  --LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNA  314

Query  392  YLVEARPQK  400
             + +  P++
Sbjct  315  LVSDLAPKE  323



Lambda      K        H        a         alpha
   0.328    0.144    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00018273

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            75.9    1e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 75.9 bits (187),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 145/385 (38%), Gaps = 48/385 (12%)

Query  1    MVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKGRYMPL  59
             + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  GR   L
Sbjct  6    FLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVL  65

Query  60   IVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRGIAIVM  119
            ++ +  F +       +  L  L +LR   G         A A  AD F PE+RG A+ +
Sbjct  66   LIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGL  125

Query  120  FCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQPVILAR  179
                  +G    P +GG   + S  GWR    I  IL     +LL++             
Sbjct  126  VSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPA  183

Query  180  KADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASFVYGLL  239
            +  RL                           L +  K L+ DP++  +     F  G  
Sbjct  184  EEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF--GFA  215

Query  240  YLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNGGVMMP  299
            +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R        +  
Sbjct  216  FFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR--------LGR  264

Query  300  EWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLAYLVE-  358
              RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A + + 
Sbjct  265  RRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNALVSDL  319

Query  359  ARPQKSASAVAAHTFLRSVAGGVFP  383
            A  ++  +A   +    S+ G + P
Sbjct  320  APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.329    0.145    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00012379

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            84.4    2e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 84.4 bits (209),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 148/390 (38%), Gaps = 48/390 (12%)

Query  33   LGLSTMVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKG  91
            L L+  + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  92   RYMPLIVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRG  151
            R   L++ +  F +       +  L  L +LR   G         A A  AD F PE+RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  152  IAIVMFCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQP  211
             A+ +      +G    P +GG   + S  GWR    I  IL     +LL++        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  212  VILARKADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASF  271
                 +  RL                           L +  K L+ DP++  +     F
Sbjct  179  RPKPAEEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF  212

Query  272  VYGLLYLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNG  331
              G  +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R      
Sbjct  213  --GFAFFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR------  261

Query  332  GVMMPEWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLA  391
              +    RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A
Sbjct  262  --LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNA  314

Query  392  YLVE-ARPQKSASAVAAHTFLRSVAGGVFP  420
             + + A  ++  +A   +    S+ G + P
Sbjct  315  LVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.329    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00012380

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            84.4    2e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 84.4 bits (209),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 148/390 (38%), Gaps = 48/390 (12%)

Query  33   LGLSTMVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKG  91
            L L+  + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  92   RYMPLIVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRG  151
            R   L++ +  F +       +  L  L +LR   G         A A  AD F PE+RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  152  IAIVMFCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQP  211
             A+ +      +G    P +GG   + S  GWR    I  IL     +LL++        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  212  VILARKADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASF  271
                 +  RL                           L +  K L+ DP++  +     F
Sbjct  179  RPKPAEEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF  212

Query  272  VYGLLYLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNG  331
              G  +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R      
Sbjct  213  --GFAFFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR------  261

Query  332  GVMMPEWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLA  391
              +    RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A
Sbjct  262  --LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNA  314

Query  392  YLVE-ARPQKSASAVAAHTFLRSVAGGVFP  420
             + + A  ++  +A   +    S+ G + P
Sbjct  315  LVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.329    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00012381

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            84.4    2e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 84.4 bits (209),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 148/390 (38%), Gaps = 48/390 (12%)

Query  33   LGLSTMVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKG  91
            L L+  + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  92   RYMPLIVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRG  151
            R   L++ +  F +       +  L  L +LR   G         A A  AD F PE+RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  152  IAIVMFCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQP  211
             A+ +      +G    P +GG   + S  GWR    I  IL     +LL++        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  212  VILARKADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASF  271
                 +  RL                           L +  K L+ DP++  +     F
Sbjct  179  RPKPAEEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF  212

Query  272  VYGLLYLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNG  331
              G  +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R      
Sbjct  213  --GFAFFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR------  261

Query  332  GVMMPEWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLA  391
              +    RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A
Sbjct  262  --LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNA  314

Query  392  YLVE-ARPQKSASAVAAHTFLRSVAGGVFP  420
             + + A  ++  +A   +    S+ G + P
Sbjct  315  LVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.329    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00018274

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            72.8    7e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 72.8 bits (179),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 81/364 (22%), Positives = 137/364 (38%), Gaps = 47/364 (13%)

Query  1    MVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKGRYMPL  59
             + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  GR   L
Sbjct  6    FLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVL  65

Query  60   IVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRGIAIVM  119
            ++ +  F +       +  L  L +LR   G         A A  AD F PE+RG A+ +
Sbjct  66   LIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGL  125

Query  120  FCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQPVILAR  179
                  +G    P +GG   + S  GWR    I  IL     +LL++             
Sbjct  126  VSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPA  183

Query  180  KADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASFVYGLL  239
            +  RL                           L +  K L+ DP++  +     F  G  
Sbjct  184  EEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF--GFA  215

Query  240  YLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNGGVMMP  299
            +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R        +  
Sbjct  216  FFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR--------LGR  264

Query  300  EWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLAYLVEA  359
              RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A + + 
Sbjct  265  RRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNALVSDL  319

Query  360  RPQK  363
             P++
Sbjct  320  APKE  323



Lambda      K        H        a         alpha
   0.329    0.145    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00018275

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            81.7    9e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 81.7 bits (202),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 83/369 (22%), Positives = 140/369 (38%), Gaps = 47/369 (13%)

Query  33   LGLSTMVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKG  91
            L L+  + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  92   RYMPLIVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRG  151
            R   L++ +  F +       +  L  L +LR   G         A A  AD F PE+RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  152  IAIVMFCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQP  211
             A+ +      +G    P +GG   + S  GWR    I  IL     +LL++        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  212  VILARKADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASF  271
                 +  RL                           L +  K L+ DP++  +     F
Sbjct  179  RPKPAEEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF  212

Query  272  VYGLLYLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNG  331
              G  +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R      
Sbjct  213  --GFAFFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR------  261

Query  332  GVMMPEWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLA  391
              +    RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A
Sbjct  262  --LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNA  314

Query  392  YLVEARPQK  400
             + +  P++
Sbjct  315  LVSDLAPKE  323



Lambda      K        H        a         alpha
   0.328    0.144    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00018276

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            84.4    2e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 84.4 bits (209),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 148/390 (38%), Gaps = 48/390 (12%)

Query  33   LGLSTMVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKG  91
            L L+  + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  92   RYMPLIVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRG  151
            R   L++ +  F +       +  L  L +LR   G         A A  AD F PE+RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  152  IAIVMFCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQP  211
             A+ +      +G    P +GG   + S  GWR    I  IL     +LL++        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  212  VILARKADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASF  271
                 +  RL                           L +  K L+ DP++  +     F
Sbjct  179  RPKPAEEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF  212

Query  272  VYGLLYLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNG  331
              G  +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R      
Sbjct  213  --GFAFFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR------  261

Query  332  GVMMPEWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLA  391
              +    RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A
Sbjct  262  --LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNA  314

Query  392  YLVE-ARPQKSASAVAAHTFLRSVAGGVFP  420
             + + A  ++  +A   +    S+ G + P
Sbjct  315  LVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.329    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00018279

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            84.4    2e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 84.4 bits (209),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 148/390 (38%), Gaps = 48/390 (12%)

Query  33   LGLSTMVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKG  91
            L L+  + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  92   RYMPLIVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRG  151
            R   L++ +  F +       +  L  L +LR   G         A A  AD F PE+RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  152  IAIVMFCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQP  211
             A+ +      +G    P +GG   + S  GWR    I  IL     +LL++        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  212  VILARKADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASF  271
                 +  RL                           L +  K L+ DP++  +     F
Sbjct  179  RPKPAEEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF  212

Query  272  VYGLLYLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNG  331
              G  +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R      
Sbjct  213  --GFAFFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR------  261

Query  332  GVMMPEWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLA  391
              +    RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A
Sbjct  262  --LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNA  314

Query  392  YLVE-ARPQKSASAVAAHTFLRSVAGGVFP  420
             + + A  ++  +A   +    S+ G + P
Sbjct  315  LVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.329    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00018278

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            84.4    2e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 84.4 bits (209),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 148/390 (38%), Gaps = 48/390 (12%)

Query  33   LGLSTMVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKG  91
            L L+  + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  92   RYMPLIVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRG  151
            R   L++ +  F +       +  L  L +LR   G         A A  AD F PE+RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  152  IAIVMFCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQP  211
             A+ +      +G    P +GG   + S  GWR    I  IL     +LL++        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  212  VILARKADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASF  271
                 +  RL                           L +  K L+ DP++  +     F
Sbjct  179  RPKPAEEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF  212

Query  272  VYGLLYLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNG  331
              G  +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R      
Sbjct  213  --GFAFFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR------  261

Query  332  GVMMPEWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLA  391
              +    RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A
Sbjct  262  --LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNA  314

Query  392  YLVE-ARPQKSASAVAAHTFLRSVAGGVFP  420
             + + A  ++  +A   +    S+ G + P
Sbjct  315  LVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.329    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00012384

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            84.4    2e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 84.4 bits (209),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 148/390 (38%), Gaps = 48/390 (12%)

Query  33   LGLSTMVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKG  91
            L L+  + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  92   RYMPLIVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRG  151
            R   L++ +  F +       +  L  L +LR   G         A A  AD F PE+RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  152  IAIVMFCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQP  211
             A+ +      +G    P +GG   + S  GWR    I  IL     +LL++        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  212  VILARKADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASF  271
                 +  RL                           L +  K L+ DP++  +     F
Sbjct  179  RPKPAEEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF  212

Query  272  VYGLLYLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNG  331
              G  +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R      
Sbjct  213  --GFAFFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR------  261

Query  332  GVMMPEWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLA  391
              +    RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A
Sbjct  262  --LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNA  314

Query  392  YLVE-ARPQKSASAVAAHTFLRSVAGGVFP  420
             + + A  ++  +A   +    S+ G + P
Sbjct  315  LVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.329    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00012383

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            72.8    7e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 72.8 bits (179),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 81/364 (22%), Positives = 137/364 (38%), Gaps = 47/364 (13%)

Query  1    MVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKGRYMPL  59
             + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  GR   L
Sbjct  6    FLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVL  65

Query  60   IVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRGIAIVM  119
            ++ +  F +       +  L  L +LR   G         A A  AD F PE+RG A+ +
Sbjct  66   LIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGL  125

Query  120  FCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQPVILAR  179
                  +G    P +GG   + S  GWR    I  IL     +LL++             
Sbjct  126  VSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPA  183

Query  180  KADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASFVYGLL  239
            +  RL                           L +  K L+ DP++  +     F  G  
Sbjct  184  EEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF--GFA  215

Query  240  YLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNGGVMMP  299
            +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R        +  
Sbjct  216  FFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR--------LGR  264

Query  300  EWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLAYLVEA  359
              RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A + + 
Sbjct  265  RRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNALVSDL  319

Query  360  RPQK  363
             P++
Sbjct  320  APKE  323



Lambda      K        H        a         alpha
   0.329    0.145    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00012385

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            84.4    2e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 84.4 bits (209),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 148/390 (38%), Gaps = 48/390 (12%)

Query  33   LGLSTMVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKG  91
            L L+  + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  92   RYMPLIVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRG  151
            R   L++ +  F +       +  L  L +LR   G         A A  AD F PE+RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  152  IAIVMFCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQP  211
             A+ +      +G    P +GG   + S  GWR    I  IL     +LL++        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  212  VILARKADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASF  271
                 +  RL                           L +  K L+ DP++  +     F
Sbjct  179  RPKPAEEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF  212

Query  272  VYGLLYLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNG  331
              G  +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R      
Sbjct  213  --GFAFFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR------  261

Query  332  GVMMPEWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLA  391
              +    RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A
Sbjct  262  --LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNA  314

Query  392  YLVE-ARPQKSASAVAAHTFLRSVAGGVFP  420
             + + A  ++  +A   +    S+ G + P
Sbjct  315  LVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.329    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00018280

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            84.4    2e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 84.4 bits (209),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 148/390 (38%), Gaps = 48/390 (12%)

Query  33   LGLSTMVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKG  91
            L L+  + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  92   RYMPLIVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRG  151
            R   L++ +  F +       +  L  L +LR   G         A A  AD F PE+RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  152  IAIVMFCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQP  211
             A+ +      +G    P +GG   + S  GWR    I  IL     +LL++        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  212  VILARKADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASF  271
                 +  RL                           L +  K L+ DP++  +     F
Sbjct  179  RPKPAEEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF  212

Query  272  VYGLLYLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNG  331
              G  +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R      
Sbjct  213  --GFAFFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR------  261

Query  332  GVMMPEWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLA  391
              +    RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A
Sbjct  262  --LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNA  314

Query  392  YLVE-ARPQKSASAVAAHTFLRSVAGGVFP  420
             + + A  ++  +A   +    S+ G + P
Sbjct  315  LVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.329    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00012386

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            90.6    2e-20


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 90.6 bits (225),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 83/369 (22%), Positives = 140/369 (38%), Gaps = 47/369 (13%)

Query  113  LGLSTMVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKG  171
            L L+  + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  172  RYMPLIVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRG  231
            R   L++ +  F +       +  L  L +LR   G         A A  AD F PE+RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  232  IAIVMFCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQP  291
             A+ +      +G    P +GG   + S  GWR    I  IL     +LL++        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  292  VILARKADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASF  351
                 +  RL                           L +  K L+ DP++  +     F
Sbjct  179  RPKPAEEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF  212

Query  352  VYGLLYLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNG  411
              G  +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R      
Sbjct  213  --GFAFFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR------  261

Query  412  GVMMPEWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLA  471
              +    RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A
Sbjct  262  --LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNA  314

Query  472  YLVEARPQK  480
             + +  P++
Sbjct  315  LVSDLAPKE  323



Lambda      K        H        a         alpha
   0.327    0.143    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598144560


Query= TCONS_00012387

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            93.6    2e-21


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 93.6 bits (233),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 148/390 (38%), Gaps = 48/390 (12%)

Query  113  LGLSTMVVAFASSIFSAAMPAVM-QIYGISREVCTLGISLYVFGFAFGPLIFGPFSEVKG  171
            L L+  + A   S+   A+P ++ +  GIS     L ++L+  G+A    + G  S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  172  RYMPLIVSMFGFTIFSFATAVSKDLQSLFILRYFTGFFGSGPLTLAGASFADMFSPEQRG  231
            R   L++ +  F +       +  L  L +LR   G         A A  AD F PE+RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  232  IAIVMFCLMVFIGPLAAPFVGGFTVMNSSLGWRWTAYIPGILGGAVLLLLVVFLEETYQP  291
             A+ +      +G    P +GG   + S  GWR    I  IL     +LL++        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGL--LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  292  VILARKADRLRRETGNWALHAKHDELRLDPRSILTEYLSLPLKMLVLDPIVTCMCVFASF  351
                 +  RL                           L +  K L+ DP++  +     F
Sbjct  179  RPKPAEEARLS--------------------------LIVAWKALLRDPVLWLLLALLLF  212

Query  352  VYGLLYLFLTAYPTIFQKIHGMNPGVGGLPYLGVIVGQLLGAVGIAATQPWVLRKLEQNG  411
              G  +  L  Y  ++Q++ G++  + GL      +G LLGA+G         R      
Sbjct  213  --GFAFFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR------  261

Query  412  GVMMPEWRLPVAIPGAVAFSAGLFWLGWSGYKQSIHWIVPTLSGLLTGFGLLTMFLPSLA  471
              +    RL +A+   +  + GL  L  +     +   +     LL GFG   +F    A
Sbjct  262  --LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNA  314

Query  472  YLVE-ARPQKSASAVAAHTFLRSVAGGVFP  500
             + + A  ++  +A   +    S+ G + P
Sbjct  315  LVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.143    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00012388

Length=397


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00012389

Length=266


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0798    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00012390

Length=347


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00012391

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00018284

Length=1012
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430125 pfam08642, Rxt3, Histone deacetylation protein Rxt3. R...  176     3e-52


>CDD:430125 pfam08642, Rxt3, Histone deacetylation protein Rxt3.  Rxt3 has 
been shown in yeast to be required for histone deacetylation.
Length=113

 Score = 176 bits (449),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 60/121 (50%), Positives = 72/121 (60%), Gaps = 8/121 (7%)

Query  808  TVRVPRFRIDAGRREEICARRALWGTGIYTDDSDPVAAAMHSGFFRGAWSEEIDVDMLDL  867
            TVR+PR  +    REEI ARR LWGT IYTDDSD +AA +HSG+        IDVD+  L
Sbjct  1    TVRIPREHLTPEAREEITARRELWGTDIYTDDSDVLAALIHSGW--------IDVDVSAL  52

Query  868  EIRDAYQHAPTTAEDMGLTGDRPRIPPVPPTDKDLHITLLILPKLERYESSVLFGLKSRS  927
            +          +A +  LT   PR P   P D DLH+TLLILP LE+Y SS   G+KSR 
Sbjct  53   KRAGNNNKIDLSAWNPLLTKPPPRTPVNVPIDFDLHVTLLILPPLEKYASSTRNGIKSRE  112

Query  928  W  928
            W
Sbjct  113  W  113



Lambda      K        H        a         alpha
   0.312    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1296942416


Query= TCONS_00012392

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltr...  813     0.0  


>CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase. 
 
Length=570

 Score = 813 bits (2102),  Expect = 0.0, Method: Composition-based stats.
 Identities = 283/575 (49%), Positives = 364/575 (63%), Gaps = 24/575 (4%)

Query  67   LPVPSLEETGRRYLKSVHAVVSEAEYERTKKAVEAFIRPGGEGQPLQERLLARAADPKIK  126
            LPVP LE+T  RYL+SV  +++E EYERT+K VE F++ GG    LQERLL RA D K  
Sbjct  1    LPVPPLEDTLDRYLESVKPLLTEEEYERTEKLVEEFLKGGGPK--LQERLLERAKDKK--  56

Query  127  NWLTEWWNHAAYLGYRDPVIPYVSYFYSYKDDRLRR-----NPAKRAASITTAALEFKRQ  181
            NWL +WW   AYL YRDP++   + F+ + DD            KRAA++  AAL+FKR 
Sbjct  57   NWLEDWWLDYAYLEYRDPLVLNSNPFFVFPDDPDPLDEPTNTQLKRAANLIYAALKFKRL  116

Query  182  VDDGSLEPEYMRKLPMAMSSYEYMFNCCRIPAEGADYPQKYP--AKENEHIVVVRKNQFF  239
            +D  +L P+    +P+ MS Y+ +FN  RIP +  D  Q +P    E  HIVV+RK QF+
Sbjct  117  LDRETLPPDVEGGVPLCMSQYKRLFNTTRIPGKERDILQHFPDSGVEPRHIVVLRKGQFY  176

Query  240  KVPLVVNGERLNVSELERQFERIYQIAQRA----PPVGVLTVANRDLWADARKKLLAANP  295
            KV ++ +G  L+ +ELE Q +RI   A  +    PPVGVLT  NRD+WA AR++LL  +P
Sbjct  177  KVDVLDSGRPLSPAELEAQLQRILDDASASNPPPPPVGVLTTDNRDVWAKAREELLKLDP  236

Query  296  ANEQALRDIESSGFVVCLDDATP--VTLEERAH-QYWH-GDGTNRWFDKPLQFIINDNGT  351
             N ++L  IES+ FVVCLDDA+P   T  E +H      GDGTNRWFDK LQ I+  NG 
Sbjct  237  GNAESLEAIESALFVVCLDDASPEDKTELEGSHGGGSLGGDGTNRWFDKSLQLIVFKNGR  296

Query  352  AGFMGEHSMMDGSPTHRLNDHLNNLIFNNKIDLSEKPVRSNLPDPRPIEFHLNSEVLEAI  411
            AGF GEHS  DG+P  RLND++   IF NK   S     S  P P  +EF L+ E+  AI
Sbjct  297  AGFNGEHSPADGTPVLRLNDYVLKSIFENKPVSSS-SASSLPPPPEKLEFELDPELKSAI  355

Query  412  DAASKEHRQQMSAHELKVQSYQGYGKGLIKKFKCSPDAYVQMIIQLAYFKMYGKNRPTYE  471
            + A     + +S  +L+V  +  YGK  IKKFK SPDA++QM +QLAY++++GK  PTYE
Sbjct  356  EEAETRFDKLISDLDLRVLEFTDYGKNFIKKFKLSPDAFIQMALQLAYYRLHGKFAPTYE  415

Query  472  SASTRKFQEGRTETIRSVSDESVAFCKAQADPSVPREEVVRLFRAALAAHSKYTALASDG  531
            SASTRKF+ GRTETIRSV+ ESVAF KA  DPS   EE   L RAA+ AH K T  AS G
Sbjct  416  SASTRKFRHGRTETIRSVTPESVAFVKAMLDPSASDEEKRELLRAAVKAHVKLTKEASTG  475

Query  532  QGVDRHLFGLKKLLREGEKLPALYEDPAYAYSSSWYLSTSQLSSEFFNGYGWSQVIDDGF  591
            QGVDRHLFGLK + +EG  LP L+ DPAY  S+ W LSTSQL S    G G+  V+ DG+
Sbjct  476  QGVDRHLFGLKLVAKEGGLLPPLFSDPAYKKSNHWVLSTSQLGSPALRGGGFGPVVPDGY  535

Query  592  GIAYMINENSLNFNIVCKRLG----AERMSYYLNE  622
            GI Y I ++S++F+I   +       ER +  L E
Sbjct  536  GIGYNIQDDSISFSISSFKSSPETDTERFAKALEE  570



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00018286

Length=242
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltr...  249     4e-80


>CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase. 
 
Length=570

 Score = 249 bits (637),  Expect = 4e-80, Method: Composition-based stats.
 Identities = 85/183 (46%), Positives = 113/183 (62%), Gaps = 11/183 (6%)

Query  67   LPVPSLEETGRRYLKSVHAVVSEAEYERTKKAVEAFIRPGGEGQPLQERLLARAADPKIK  126
            LPVP LE+T  RYL+SV  +++E EYERT+K VE F++ GG    LQERLL RA D K  
Sbjct  1    LPVPPLEDTLDRYLESVKPLLTEEEYERTEKLVEEFLKGGGPK--LQERLLERAKDKK--  56

Query  127  NWLTEWWNHAAYLGYRDPVIPYVSYFYSYKDDRLRR-----NPAKRAASITTAALEFKRQ  181
            NWL +WW   AYL YRDP++   + F+ + DD            KRAA++  AAL+FKR 
Sbjct  57   NWLEDWWLDYAYLEYRDPLVLNSNPFFVFPDDPDPLDEPTNTQLKRAANLIYAALKFKRL  116

Query  182  VDDGSLEPEYMRKLPMAMSSYEYMFNCCRIPAEGADYPQKYP--AKENEHIVVVRKNQFF  239
            +D  +L P+    +P+ MS Y+ +FN  RIP +  D  Q +P    E  HIVV+RK QF+
Sbjct  117  LDRETLPPDVEGGVPLCMSQYKRLFNTTRIPGKERDILQHFPDSGVEPRHIVVLRKGQFY  176

Query  240  KVP  242
            KV 
Sbjct  177  KVD  179



Lambda      K        H        a         alpha
   0.318    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00018287

Length=907
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430125 pfam08642, Rxt3, Histone deacetylation protein Rxt3. R...  176     2e-52


>CDD:430125 pfam08642, Rxt3, Histone deacetylation protein Rxt3.  Rxt3 has 
been shown in yeast to be required for histone deacetylation.
Length=113

 Score = 176 bits (449),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 60/121 (50%), Positives = 72/121 (60%), Gaps = 8/121 (7%)

Query  703  TVRVPRFRIDAGRREEICARRALWGTGIYTDDSDPVAAAMHSGFFRGAWSEEIDVDMLDL  762
            TVR+PR  +    REEI ARR LWGT IYTDDSD +AA +HSG+        IDVD+  L
Sbjct  1    TVRIPREHLTPEAREEITARRELWGTDIYTDDSDVLAALIHSGW--------IDVDVSAL  52

Query  763  EIRDAYQHAPTTAEDMGLTGDRPRIPPVPPTDKDLHITLLILPKLERYESSVLFGLKSRS  822
            +          +A +  LT   PR P   P D DLH+TLLILP LE+Y SS   G+KSR 
Sbjct  53   KRAGNNNKIDLSAWNPLLTKPPPRTPVNVPIDFDLHVTLLILPPLEKYASSTRNGIKSRE  112

Query  823  W  823
            W
Sbjct  113  W  113



Lambda      K        H        a         alpha
   0.312    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1165637368


Query= TCONS_00012395

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430125 pfam08642, Rxt3, Histone deacetylation protein Rxt3. R...  173     4e-55


>CDD:430125 pfam08642, Rxt3, Histone deacetylation protein Rxt3.  Rxt3 has 
been shown in yeast to be required for histone deacetylation.
Length=113

 Score = 173 bits (440),  Expect = 4e-55, Method: Composition-based stats.
 Identities = 60/121 (50%), Positives = 72/121 (60%), Gaps = 8/121 (7%)

Query  118  TVRVPRFRIDAGRREEICARRALWGTGIYTDDSDPVAAAMHSGFFRGAWSEEIDVDMLDL  177
            TVR+PR  +    REEI ARR LWGT IYTDDSD +AA +HSG+        IDVD+  L
Sbjct  1    TVRIPREHLTPEAREEITARRELWGTDIYTDDSDVLAALIHSGW--------IDVDVSAL  52

Query  178  EIRDAYQHAPTTAEDMGLTGDRPRIPPVPPTDKDLHITLLILPKLERYESSVLFGLKSRS  237
            +          +A +  LT   PR P   P D DLH+TLLILP LE+Y SS   G+KSR 
Sbjct  53   KRAGNNNKIDLSAWNPLLTKPPPRTPVNVPIDFDLHVTLLILPPLEKYASSTRNGIKSRE  112

Query  238  W  238
            W
Sbjct  113  W  113



Lambda      K        H        a         alpha
   0.319    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00018288

Length=940
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430125 pfam08642, Rxt3, Histone deacetylation protein Rxt3. R...  176     3e-52


>CDD:430125 pfam08642, Rxt3, Histone deacetylation protein Rxt3.  Rxt3 has 
been shown in yeast to be required for histone deacetylation.
Length=113

 Score = 176 bits (448),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 60/121 (50%), Positives = 72/121 (60%), Gaps = 8/121 (7%)

Query  736  TVRVPRFRIDAGRREEICARRALWGTGIYTDDSDPVAAAMHSGFFRGAWSEEIDVDMLDL  795
            TVR+PR  +    REEI ARR LWGT IYTDDSD +AA +HSG+        IDVD+  L
Sbjct  1    TVRIPREHLTPEAREEITARRELWGTDIYTDDSDVLAALIHSGW--------IDVDVSAL  52

Query  796  EIRDAYQHAPTTAEDMGLTGDRPRIPPVPPTDKDLHITLLILPKLERYESSVLFGLKSRS  855
            +          +A +  LT   PR P   P D DLH+TLLILP LE+Y SS   G+KSR 
Sbjct  53   KRAGNNNKIDLSAWNPLLTKPPPRTPVNVPIDFDLHVTLLILPPLEKYASSTRNGIKSRE  112

Query  856  W  856
            W
Sbjct  113  W  113



Lambda      K        H        a         alpha
   0.312    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1194999344


Query= TCONS_00012396

Length=628
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltr...  813     0.0  


>CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase. 
 
Length=570

 Score = 813 bits (2102),  Expect = 0.0, Method: Composition-based stats.
 Identities = 283/575 (49%), Positives = 364/575 (63%), Gaps = 24/575 (4%)

Query  67   LPVPSLEETGRRYLKSVHAVVSEAEYERTKKAVEAFIRPGGEGQPLQERLLARAADPKIK  126
            LPVP LE+T  RYL+SV  +++E EYERT+K VE F++ GG    LQERLL RA D K  
Sbjct  1    LPVPPLEDTLDRYLESVKPLLTEEEYERTEKLVEEFLKGGGPK--LQERLLERAKDKK--  56

Query  127  NWLTEWWNHAAYLGYRDPVIPYVSYFYSYKDDRLRR-----NPAKRAASITTAALEFKRQ  181
            NWL +WW   AYL YRDP++   + F+ + DD            KRAA++  AAL+FKR 
Sbjct  57   NWLEDWWLDYAYLEYRDPLVLNSNPFFVFPDDPDPLDEPTNTQLKRAANLIYAALKFKRL  116

Query  182  VDDGSLEPEYMRKLPMAMSSYEYMFNCCRIPAEGADYPQKYP--AKENEHIVVVRKNQFF  239
            +D  +L P+    +P+ MS Y+ +FN  RIP +  D  Q +P    E  HIVV+RK QF+
Sbjct  117  LDRETLPPDVEGGVPLCMSQYKRLFNTTRIPGKERDILQHFPDSGVEPRHIVVLRKGQFY  176

Query  240  KVPLVVNGERLNVSELERQFERIYQIAQRA----PPVGVLTVANRDLWADARKKLLAANP  295
            KV ++ +G  L+ +ELE Q +RI   A  +    PPVGVLT  NRD+WA AR++LL  +P
Sbjct  177  KVDVLDSGRPLSPAELEAQLQRILDDASASNPPPPPVGVLTTDNRDVWAKAREELLKLDP  236

Query  296  ANEQALRDIESSGFVVCLDDATP--VTLEERAH-QYWH-GDGTNRWFDKPLQFIINDNGT  351
             N ++L  IES+ FVVCLDDA+P   T  E +H      GDGTNRWFDK LQ I+  NG 
Sbjct  237  GNAESLEAIESALFVVCLDDASPEDKTELEGSHGGGSLGGDGTNRWFDKSLQLIVFKNGR  296

Query  352  AGFMGEHSMMDGSPTHRLNDHLNNLIFNNKIDLSEKPVRSNLPDPRPIEFHLNSEVLEAI  411
            AGF GEHS  DG+P  RLND++   IF NK   S     S  P P  +EF L+ E+  AI
Sbjct  297  AGFNGEHSPADGTPVLRLNDYVLKSIFENKPVSSS-SASSLPPPPEKLEFELDPELKSAI  355

Query  412  DAASKEHRQQMSAHELKVQSYQGYGKGLIKKFKCSPDAYVQMIIQLAYFKMYGKNRPTYE  471
            + A     + +S  +L+V  +  YGK  IKKFK SPDA++QM +QLAY++++GK  PTYE
Sbjct  356  EEAETRFDKLISDLDLRVLEFTDYGKNFIKKFKLSPDAFIQMALQLAYYRLHGKFAPTYE  415

Query  472  SASTRKFQEGRTETIRSVSDESVAFCKAQADPSVPREEVVRLFRAALAAHSKYTALASDG  531
            SASTRKF+ GRTETIRSV+ ESVAF KA  DPS   EE   L RAA+ AH K T  AS G
Sbjct  416  SASTRKFRHGRTETIRSVTPESVAFVKAMLDPSASDEEKRELLRAAVKAHVKLTKEASTG  475

Query  532  QGVDRHLFGLKKLLREGEKLPALYEDPAYAYSSSWYLSTSQLSSEFFNGYGWSQVIDDGF  591
            QGVDRHLFGLK + +EG  LP L+ DPAY  S+ W LSTSQL S    G G+  V+ DG+
Sbjct  476  QGVDRHLFGLKLVAKEGGLLPPLFSDPAYKKSNHWVLSTSQLGSPALRGGGFGPVVPDGY  535

Query  592  GIAYMINENSLNFNIVCKRLG----AERMSYYLNE  622
            GI Y I ++S++F+I   +       ER +  L E
Sbjct  536  GIGYNIQDDSISFSISSFKSSPETDTERFAKALEE  570



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789012650


Query= TCONS_00012397

Length=644
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltr...  813     0.0  


>CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase. 
 
Length=570

 Score = 813 bits (2102),  Expect = 0.0, Method: Composition-based stats.
 Identities = 283/575 (49%), Positives = 364/575 (63%), Gaps = 24/575 (4%)

Query  67   LPVPSLEETGRRYLKSVHAVVSEAEYERTKKAVEAFIRPGGEGQPLQERLLARAADPKIK  126
            LPVP LE+T  RYL+SV  +++E EYERT+K VE F++ GG    LQERLL RA D K  
Sbjct  1    LPVPPLEDTLDRYLESVKPLLTEEEYERTEKLVEEFLKGGGPK--LQERLLERAKDKK--  56

Query  127  NWLTEWWNHAAYLGYRDPVIPYVSYFYSYKDDRLRR-----NPAKRAASITTAALEFKRQ  181
            NWL +WW   AYL YRDP++   + F+ + DD            KRAA++  AAL+FKR 
Sbjct  57   NWLEDWWLDYAYLEYRDPLVLNSNPFFVFPDDPDPLDEPTNTQLKRAANLIYAALKFKRL  116

Query  182  VDDGSLEPEYMRKLPMAMSSYEYMFNCCRIPAEGADYPQKYP--AKENEHIVVVRKNQFF  239
            +D  +L P+    +P+ MS Y+ +FN  RIP +  D  Q +P    E  HIVV+RK QF+
Sbjct  117  LDRETLPPDVEGGVPLCMSQYKRLFNTTRIPGKERDILQHFPDSGVEPRHIVVLRKGQFY  176

Query  240  KVPLVVNGERLNVSELERQFERIYQIAQRA----PPVGVLTVANRDLWADARKKLLAANP  295
            KV ++ +G  L+ +ELE Q +RI   A  +    PPVGVLT  NRD+WA AR++LL  +P
Sbjct  177  KVDVLDSGRPLSPAELEAQLQRILDDASASNPPPPPVGVLTTDNRDVWAKAREELLKLDP  236

Query  296  ANEQALRDIESSGFVVCLDDATP--VTLEERAH-QYWH-GDGTNRWFDKPLQFIINDNGT  351
             N ++L  IES+ FVVCLDDA+P   T  E +H      GDGTNRWFDK LQ I+  NG 
Sbjct  237  GNAESLEAIESALFVVCLDDASPEDKTELEGSHGGGSLGGDGTNRWFDKSLQLIVFKNGR  296

Query  352  AGFMGEHSMMDGSPTHRLNDHLNNLIFNNKIDLSEKPVRSNLPDPRPIEFHLNSEVLEAI  411
            AGF GEHS  DG+P  RLND++   IF NK   S     S  P P  +EF L+ E+  AI
Sbjct  297  AGFNGEHSPADGTPVLRLNDYVLKSIFENKPVSSS-SASSLPPPPEKLEFELDPELKSAI  355

Query  412  DAASKEHRQQMSAHELKVQSYQGYGKGLIKKFKCSPDAYVQMIIQLAYFKMYGKNRPTYE  471
            + A     + +S  +L+V  +  YGK  IKKFK SPDA++QM +QLAY++++GK  PTYE
Sbjct  356  EEAETRFDKLISDLDLRVLEFTDYGKNFIKKFKLSPDAFIQMALQLAYYRLHGKFAPTYE  415

Query  472  SASTRKFQEGRTETIRSVSDESVAFCKAQADPSVPREEVVRLFRAALAAHSKYTALASDG  531
            SASTRKF+ GRTETIRSV+ ESVAF KA  DPS   EE   L RAA+ AH K T  AS G
Sbjct  416  SASTRKFRHGRTETIRSVTPESVAFVKAMLDPSASDEEKRELLRAAVKAHVKLTKEASTG  475

Query  532  QGVDRHLFGLKKLLREGEKLPALYEDPAYAYSSSWYLSTSQLSSEFFNGYGWSQVIDDGF  591
            QGVDRHLFGLK + +EG  LP L+ DPAY  S+ W LSTSQL S    G G+  V+ DG+
Sbjct  476  QGVDRHLFGLKLVAKEGGLLPPLFSDPAYKKSNHWVLSTSQLGSPALRGGGFGPVVPDGY  535

Query  592  GIAYMINENSLNFNIVCKRLG----AERMSYYLNE  622
            GI Y I ++S++F+I   +       ER +  L E
Sbjct  536  GIGYNIQDDSISFSISSFKSSPETDTERFAKALEE  570



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 812609290


Query= TCONS_00018289

Length=900
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430125 pfam08642, Rxt3, Histone deacetylation protein Rxt3. R...  176     2e-52


>CDD:430125 pfam08642, Rxt3, Histone deacetylation protein Rxt3.  Rxt3 has 
been shown in yeast to be required for histone deacetylation.
Length=113

 Score = 176 bits (448),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 60/121 (50%), Positives = 72/121 (60%), Gaps = 8/121 (7%)

Query  696  TVRVPRFRIDAGRREEICARRALWGTGIYTDDSDPVAAAMHSGFFRGAWSEEIDVDMLDL  755
            TVR+PR  +    REEI ARR LWGT IYTDDSD +AA +HSG+        IDVD+  L
Sbjct  1    TVRIPREHLTPEAREEITARRELWGTDIYTDDSDVLAALIHSGW--------IDVDVSAL  52

Query  756  EIRDAYQHAPTTAEDMGLTGDRPRIPPVPPTDKDLHITLLILPKLERYESSVLFGLKSRS  815
            +          +A +  LT   PR P   P D DLH+TLLILP LE+Y SS   G+KSR 
Sbjct  53   KRAGNNNKIDLSAWNPLLTKPPPRTPVNVPIDFDLHVTLLILPPLEKYASSTRNGIKSRE  112

Query  816  W  816
            W
Sbjct  113  W  113



Lambda      K        H        a         alpha
   0.312    0.128    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1155588770


Query= TCONS_00018290

Length=644
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltr...  813     0.0  


>CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase. 
 
Length=570

 Score = 813 bits (2102),  Expect = 0.0, Method: Composition-based stats.
 Identities = 283/575 (49%), Positives = 364/575 (63%), Gaps = 24/575 (4%)

Query  67   LPVPSLEETGRRYLKSVHAVVSEAEYERTKKAVEAFIRPGGEGQPLQERLLARAADPKIK  126
            LPVP LE+T  RYL+SV  +++E EYERT+K VE F++ GG    LQERLL RA D K  
Sbjct  1    LPVPPLEDTLDRYLESVKPLLTEEEYERTEKLVEEFLKGGGPK--LQERLLERAKDKK--  56

Query  127  NWLTEWWNHAAYLGYRDPVIPYVSYFYSYKDDRLRR-----NPAKRAASITTAALEFKRQ  181
            NWL +WW   AYL YRDP++   + F+ + DD            KRAA++  AAL+FKR 
Sbjct  57   NWLEDWWLDYAYLEYRDPLVLNSNPFFVFPDDPDPLDEPTNTQLKRAANLIYAALKFKRL  116

Query  182  VDDGSLEPEYMRKLPMAMSSYEYMFNCCRIPAEGADYPQKYP--AKENEHIVVVRKNQFF  239
            +D  +L P+    +P+ MS Y+ +FN  RIP +  D  Q +P    E  HIVV+RK QF+
Sbjct  117  LDRETLPPDVEGGVPLCMSQYKRLFNTTRIPGKERDILQHFPDSGVEPRHIVVLRKGQFY  176

Query  240  KVPLVVNGERLNVSELERQFERIYQIAQRA----PPVGVLTVANRDLWADARKKLLAANP  295
            KV ++ +G  L+ +ELE Q +RI   A  +    PPVGVLT  NRD+WA AR++LL  +P
Sbjct  177  KVDVLDSGRPLSPAELEAQLQRILDDASASNPPPPPVGVLTTDNRDVWAKAREELLKLDP  236

Query  296  ANEQALRDIESSGFVVCLDDATP--VTLEERAH-QYWH-GDGTNRWFDKPLQFIINDNGT  351
             N ++L  IES+ FVVCLDDA+P   T  E +H      GDGTNRWFDK LQ I+  NG 
Sbjct  237  GNAESLEAIESALFVVCLDDASPEDKTELEGSHGGGSLGGDGTNRWFDKSLQLIVFKNGR  296

Query  352  AGFMGEHSMMDGSPTHRLNDHLNNLIFNNKIDLSEKPVRSNLPDPRPIEFHLNSEVLEAI  411
            AGF GEHS  DG+P  RLND++   IF NK   S     S  P P  +EF L+ E+  AI
Sbjct  297  AGFNGEHSPADGTPVLRLNDYVLKSIFENKPVSSS-SASSLPPPPEKLEFELDPELKSAI  355

Query  412  DAASKEHRQQMSAHELKVQSYQGYGKGLIKKFKCSPDAYVQMIIQLAYFKMYGKNRPTYE  471
            + A     + +S  +L+V  +  YGK  IKKFK SPDA++QM +QLAY++++GK  PTYE
Sbjct  356  EEAETRFDKLISDLDLRVLEFTDYGKNFIKKFKLSPDAFIQMALQLAYYRLHGKFAPTYE  415

Query  472  SASTRKFQEGRTETIRSVSDESVAFCKAQADPSVPREEVVRLFRAALAAHSKYTALASDG  531
            SASTRKF+ GRTETIRSV+ ESVAF KA  DPS   EE   L RAA+ AH K T  AS G
Sbjct  416  SASTRKFRHGRTETIRSVTPESVAFVKAMLDPSASDEEKRELLRAAVKAHVKLTKEASTG  475

Query  532  QGVDRHLFGLKKLLREGEKLPALYEDPAYAYSSSWYLSTSQLSSEFFNGYGWSQVIDDGF  591
            QGVDRHLFGLK + +EG  LP L+ DPAY  S+ W LSTSQL S    G G+  V+ DG+
Sbjct  476  QGVDRHLFGLKLVAKEGGLLPPLFSDPAYKKSNHWVLSTSQLGSPALRGGGFGPVVPDGY  535

Query  592  GIAYMINENSLNFNIVCKRLG----AERMSYYLNE  622
            GI Y I ++S++F+I   +       ER +  L E
Sbjct  536  GIGYNIQDDSISFSISSFKSSPETDTERFAKALEE  570



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 812609290


Query= TCONS_00018292

Length=644
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltr...  813     0.0  


>CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase. 
 
Length=570

 Score = 813 bits (2102),  Expect = 0.0, Method: Composition-based stats.
 Identities = 283/575 (49%), Positives = 364/575 (63%), Gaps = 24/575 (4%)

Query  67   LPVPSLEETGRRYLKSVHAVVSEAEYERTKKAVEAFIRPGGEGQPLQERLLARAADPKIK  126
            LPVP LE+T  RYL+SV  +++E EYERT+K VE F++ GG    LQERLL RA D K  
Sbjct  1    LPVPPLEDTLDRYLESVKPLLTEEEYERTEKLVEEFLKGGGPK--LQERLLERAKDKK--  56

Query  127  NWLTEWWNHAAYLGYRDPVIPYVSYFYSYKDDRLRR-----NPAKRAASITTAALEFKRQ  181
            NWL +WW   AYL YRDP++   + F+ + DD            KRAA++  AAL+FKR 
Sbjct  57   NWLEDWWLDYAYLEYRDPLVLNSNPFFVFPDDPDPLDEPTNTQLKRAANLIYAALKFKRL  116

Query  182  VDDGSLEPEYMRKLPMAMSSYEYMFNCCRIPAEGADYPQKYP--AKENEHIVVVRKNQFF  239
            +D  +L P+    +P+ MS Y+ +FN  RIP +  D  Q +P    E  HIVV+RK QF+
Sbjct  117  LDRETLPPDVEGGVPLCMSQYKRLFNTTRIPGKERDILQHFPDSGVEPRHIVVLRKGQFY  176

Query  240  KVPLVVNGERLNVSELERQFERIYQIAQRA----PPVGVLTVANRDLWADARKKLLAANP  295
            KV ++ +G  L+ +ELE Q +RI   A  +    PPVGVLT  NRD+WA AR++LL  +P
Sbjct  177  KVDVLDSGRPLSPAELEAQLQRILDDASASNPPPPPVGVLTTDNRDVWAKAREELLKLDP  236

Query  296  ANEQALRDIESSGFVVCLDDATP--VTLEERAH-QYWH-GDGTNRWFDKPLQFIINDNGT  351
             N ++L  IES+ FVVCLDDA+P   T  E +H      GDGTNRWFDK LQ I+  NG 
Sbjct  237  GNAESLEAIESALFVVCLDDASPEDKTELEGSHGGGSLGGDGTNRWFDKSLQLIVFKNGR  296

Query  352  AGFMGEHSMMDGSPTHRLNDHLNNLIFNNKIDLSEKPVRSNLPDPRPIEFHLNSEVLEAI  411
            AGF GEHS  DG+P  RLND++   IF NK   S     S  P P  +EF L+ E+  AI
Sbjct  297  AGFNGEHSPADGTPVLRLNDYVLKSIFENKPVSSS-SASSLPPPPEKLEFELDPELKSAI  355

Query  412  DAASKEHRQQMSAHELKVQSYQGYGKGLIKKFKCSPDAYVQMIIQLAYFKMYGKNRPTYE  471
            + A     + +S  +L+V  +  YGK  IKKFK SPDA++QM +QLAY++++GK  PTYE
Sbjct  356  EEAETRFDKLISDLDLRVLEFTDYGKNFIKKFKLSPDAFIQMALQLAYYRLHGKFAPTYE  415

Query  472  SASTRKFQEGRTETIRSVSDESVAFCKAQADPSVPREEVVRLFRAALAAHSKYTALASDG  531
            SASTRKF+ GRTETIRSV+ ESVAF KA  DPS   EE   L RAA+ AH K T  AS G
Sbjct  416  SASTRKFRHGRTETIRSVTPESVAFVKAMLDPSASDEEKRELLRAAVKAHVKLTKEASTG  475

Query  532  QGVDRHLFGLKKLLREGEKLPALYEDPAYAYSSSWYLSTSQLSSEFFNGYGWSQVIDDGF  591
            QGVDRHLFGLK + +EG  LP L+ DPAY  S+ W LSTSQL S    G G+  V+ DG+
Sbjct  476  QGVDRHLFGLKLVAKEGGLLPPLFSDPAYKKSNHWVLSTSQLGSPALRGGGFGPVVPDGY  535

Query  592  GIAYMINENSLNFNIVCKRLG----AERMSYYLNE  622
            GI Y I ++S++F+I   +       ER +  L E
Sbjct  536  GIGYNIQDDSISFSISSFKSSPETDTERFAKALEE  570



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 812609290


Query= TCONS_00018293

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltr...  812     0.0  


>CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase. 
 
Length=570

 Score = 812 bits (2100),  Expect = 0.0, Method: Composition-based stats.
 Identities = 283/575 (49%), Positives = 364/575 (63%), Gaps = 24/575 (4%)

Query  11   LPVPSLEETGRRYLKSVHAVVSEAEYERTKKAVEAFIRPGGEGQPLQERLLARAADPKIK  70
            LPVP LE+T  RYL+SV  +++E EYERT+K VE F++ GG    LQERLL RA D K  
Sbjct  1    LPVPPLEDTLDRYLESVKPLLTEEEYERTEKLVEEFLKGGGPK--LQERLLERAKDKK--  56

Query  71   NWLTEWWNHAAYLGYRDPVIPYVSYFYSYKDDRLRR-----NPAKRAASITTAALEFKRQ  125
            NWL +WW   AYL YRDP++   + F+ + DD            KRAA++  AAL+FKR 
Sbjct  57   NWLEDWWLDYAYLEYRDPLVLNSNPFFVFPDDPDPLDEPTNTQLKRAANLIYAALKFKRL  116

Query  126  VDDGSLEPEYMRKLPMAMSSYEYMFNCCRIPAEGADYPQKYP--AKENEHIVVVRKNQFF  183
            +D  +L P+    +P+ MS Y+ +FN  RIP +  D  Q +P    E  HIVV+RK QF+
Sbjct  117  LDRETLPPDVEGGVPLCMSQYKRLFNTTRIPGKERDILQHFPDSGVEPRHIVVLRKGQFY  176

Query  184  KVPLVVNGERLNVSELERQFERIYQIAQRA----PPVGVLTVANRDLWADARKKLLAANP  239
            KV ++ +G  L+ +ELE Q +RI   A  +    PPVGVLT  NRD+WA AR++LL  +P
Sbjct  177  KVDVLDSGRPLSPAELEAQLQRILDDASASNPPPPPVGVLTTDNRDVWAKAREELLKLDP  236

Query  240  ANEQALRDIESSGFVVCLDDATP--VTLEERAH-QYWH-GDGTNRWFDKPLQFIINDNGT  295
             N ++L  IES+ FVVCLDDA+P   T  E +H      GDGTNRWFDK LQ I+  NG 
Sbjct  237  GNAESLEAIESALFVVCLDDASPEDKTELEGSHGGGSLGGDGTNRWFDKSLQLIVFKNGR  296

Query  296  AGFMGEHSMMDGSPTHRLNDHLNNLIFNNKIDLSEKPVRSNLPDPRPIEFHLNSEVLEAI  355
            AGF GEHS  DG+P  RLND++   IF NK   S     S  P P  +EF L+ E+  AI
Sbjct  297  AGFNGEHSPADGTPVLRLNDYVLKSIFENKPVSSS-SASSLPPPPEKLEFELDPELKSAI  355

Query  356  DAASKEHRQQMSAHELKVQSYQGYGKGLIKKFKCSPDAYVQMIIQLAYFKMYGKNRPTYE  415
            + A     + +S  +L+V  +  YGK  IKKFK SPDA++QM +QLAY++++GK  PTYE
Sbjct  356  EEAETRFDKLISDLDLRVLEFTDYGKNFIKKFKLSPDAFIQMALQLAYYRLHGKFAPTYE  415

Query  416  SASTRKFQEGRTETIRSVSDESVAFCKAQADPSVPREEVVRLFRAALAAHSKYTALASDG  475
            SASTRKF+ GRTETIRSV+ ESVAF KA  DPS   EE   L RAA+ AH K T  AS G
Sbjct  416  SASTRKFRHGRTETIRSVTPESVAFVKAMLDPSASDEEKRELLRAAVKAHVKLTKEASTG  475

Query  476  QGVDRHLFGLKKLLREGEKLPALYEDPAYAYSSSWYLSTSQLSSEFFNGYGWSQVIDDGF  535
            QGVDRHLFGLK + +EG  LP L+ DPAY  S+ W LSTSQL S    G G+  V+ DG+
Sbjct  476  QGVDRHLFGLKLVAKEGGLLPPLFSDPAYKKSNHWVLSTSQLGSPALRGGGFGPVVPDGY  535

Query  536  GIAYMINENSLNFNIVCKRLG----AERMSYYLNE  566
            GI Y I ++S++F+I   +       ER +  L E
Sbjct  536  GIGYNIQDDSISFSISSFKSSPETDTERFAKALEE  570



Lambda      K        H        a         alpha
   0.318    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 741236288


Query= TCONS_00018294

Length=641
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltr...  812     0.0  


>CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase. 
 
Length=570

 Score = 812 bits (2101),  Expect = 0.0, Method: Composition-based stats.
 Identities = 283/575 (49%), Positives = 364/575 (63%), Gaps = 24/575 (4%)

Query  64   LPVPSLEETGRRYLKSVHAVVSEAEYERTKKAVEAFIRPGGEGQPLQERLLARAADPKIK  123
            LPVP LE+T  RYL+SV  +++E EYERT+K VE F++ GG    LQERLL RA D K  
Sbjct  1    LPVPPLEDTLDRYLESVKPLLTEEEYERTEKLVEEFLKGGGPK--LQERLLERAKDKK--  56

Query  124  NWLTEWWNHAAYLGYRDPVIPYVSYFYSYKDDRLRR-----NPAKRAASITTAALEFKRQ  178
            NWL +WW   AYL YRDP++   + F+ + DD            KRAA++  AAL+FKR 
Sbjct  57   NWLEDWWLDYAYLEYRDPLVLNSNPFFVFPDDPDPLDEPTNTQLKRAANLIYAALKFKRL  116

Query  179  VDDGSLEPEYMRKLPMAMSSYEYMFNCCRIPAEGADYPQKYP--AKENEHIVVVRKNQFF  236
            +D  +L P+    +P+ MS Y+ +FN  RIP +  D  Q +P    E  HIVV+RK QF+
Sbjct  117  LDRETLPPDVEGGVPLCMSQYKRLFNTTRIPGKERDILQHFPDSGVEPRHIVVLRKGQFY  176

Query  237  KVPLVVNGERLNVSELERQFERIYQIAQRA----PPVGVLTVANRDLWADARKKLLAANP  292
            KV ++ +G  L+ +ELE Q +RI   A  +    PPVGVLT  NRD+WA AR++LL  +P
Sbjct  177  KVDVLDSGRPLSPAELEAQLQRILDDASASNPPPPPVGVLTTDNRDVWAKAREELLKLDP  236

Query  293  ANEQALRDIESSGFVVCLDDATP--VTLEERAH-QYWH-GDGTNRWFDKPLQFIINDNGT  348
             N ++L  IES+ FVVCLDDA+P   T  E +H      GDGTNRWFDK LQ I+  NG 
Sbjct  237  GNAESLEAIESALFVVCLDDASPEDKTELEGSHGGGSLGGDGTNRWFDKSLQLIVFKNGR  296

Query  349  AGFMGEHSMMDGSPTHRLNDHLNNLIFNNKIDLSEKPVRSNLPDPRPIEFHLNSEVLEAI  408
            AGF GEHS  DG+P  RLND++   IF NK   S     S  P P  +EF L+ E+  AI
Sbjct  297  AGFNGEHSPADGTPVLRLNDYVLKSIFENKPVSSS-SASSLPPPPEKLEFELDPELKSAI  355

Query  409  DAASKEHRQQMSAHELKVQSYQGYGKGLIKKFKCSPDAYVQMIIQLAYFKMYGKNRPTYE  468
            + A     + +S  +L+V  +  YGK  IKKFK SPDA++QM +QLAY++++GK  PTYE
Sbjct  356  EEAETRFDKLISDLDLRVLEFTDYGKNFIKKFKLSPDAFIQMALQLAYYRLHGKFAPTYE  415

Query  469  SASTRKFQEGRTETIRSVSDESVAFCKAQADPSVPREEVVRLFRAALAAHSKYTALASDG  528
            SASTRKF+ GRTETIRSV+ ESVAF KA  DPS   EE   L RAA+ AH K T  AS G
Sbjct  416  SASTRKFRHGRTETIRSVTPESVAFVKAMLDPSASDEEKRELLRAAVKAHVKLTKEASTG  475

Query  529  QGVDRHLFGLKKLLREGEKLPALYEDPAYAYSSSWYLSTSQLSSEFFNGYGWSQVIDDGF  588
            QGVDRHLFGLK + +EG  LP L+ DPAY  S+ W LSTSQL S    G G+  V+ DG+
Sbjct  476  QGVDRHLFGLKLVAKEGGLLPPLFSDPAYKKSNHWVLSTSQLGSPALRGGGFGPVVPDGY  535

Query  589  GIAYMINENSLNFNIVCKRLG----AERMSYYLNE  619
            GI Y I ++S++F+I   +       ER +  L E
Sbjct  536  GIGYNIQDDSISFSISSFKSSPETDTERFAKALEE  570



Lambda      K        H        a         alpha
   0.317    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 808184920


Query= TCONS_00012398

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltr...  800     0.0  


>CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase. 
 
Length=570

 Score = 800 bits (2068),  Expect = 0.0, Method: Composition-based stats.
 Identities = 282/594 (47%), Positives = 363/594 (61%), Gaps = 43/594 (7%)

Query  11   LPVPSLEETGRRYLKSVHAVVSEAEYERTKKAVEAFIRPGGEGQPLQERLLARAADPKIK  70
            LPVP LE+T  RYL+SV  +++E EYERT+K VE F++ GG    LQERLL RA D K  
Sbjct  1    LPVPPLEDTLDRYLESVKPLLTEEEYERTEKLVEEFLKGGGPK--LQERLLERAKDKK--  56

Query  71   NWLTEWWNHAAYLGYRDPVIPYVSYFYSYKDDRLRR-----NPAKRAASITTAALEFKRQ  125
            NWL +WW   AYL YRDP++   + F+ + DD            KRAA++  AAL+FKR 
Sbjct  57   NWLEDWWLDYAYLEYRDPLVLNSNPFFVFPDDPDPLDEPTNTQLKRAANLIYAALKFKRL  116

Query  126  VDDGSLEPEYMRKLPMAMSSYEYMFNCCRIPAEGADYPQKYP--AKENEHIVVVRKNQFF  183
            +D  +L P+    +P+ MS Y+ +FN  RIP +  D  Q +P    E  HIVV+RK QF+
Sbjct  117  LDRETLPPDVEGGVPLCMSQYKRLFNTTRIPGKERDILQHFPDSGVEPRHIVVLRKGQFY  176

Query  184  KVPLVVNGERLNVSELERQFERIYQIAQRA----PPVGVLTVANRDLWADARKKLLAANP  239
            KV ++ +G  L+ +ELE Q +RI   A  +    PPVGVLT  NRD+WA AR++LL  +P
Sbjct  177  KVDVLDSGRPLSPAELEAQLQRILDDASASNPPPPPVGVLTTDNRDVWAKAREELLKLDP  236

Query  240  ANEQALRDIESSGFVVCLDDATP--VTLEERAH-QYWH-GDGTNRWFDKPLQFIINDNGT  295
             N ++L  IES+ FVVCLDDA+P   T  E +H      GDGTNRWFDK LQ I+  NG 
Sbjct  237  GNAESLEAIESALFVVCLDDASPEDKTELEGSHGGGSLGGDGTNRWFDKSLQLIVFKNGR  296

Query  296  AGFMGEHSMMDGSPTHRLNDHLNNLIFNNKIDLSEKPVRSNLPDPRPIEFHLNSEVLEAI  355
            AGF GEHS  DG+P  RLND++   IF NK   S     S  P P  +EF L+ E+  AI
Sbjct  297  AGFNGEHSPADGTPVLRLNDYVLKSIFENKPVSSS-SASSLPPPPEKLEFELDPELKSAI  355

Query  356  DAASKEHRQQMSAHELKVQSYQGYGKGLIKKFKCSPDAYVQMIIQLAYFKMYGKNRPTYE  415
            + A     + +S  +L+V  +  YGK  IKKFK SPDA++QM +QLAY++++GK  PTYE
Sbjct  356  EEAETRFDKLISDLDLRVLEFTDYGKNFIKKFKLSPDAFIQMALQLAYYRLHGKFAPTYE  415

Query  416  SASTRKFQEGRTETIRSVSDESVAFCKAQADPSVPREEVVRLFRAALAAHSKYTALASDG  475
            SASTRKF+ GRTETIRSV+ ESVAF KA  DPS   EE   L RAA+ AH K T  AS G
Sbjct  416  SASTRKFRHGRTETIRSVTPESVAFVKAMLDPSASDEEKRELLRAAVKAHVKLTKEASTG  475

Query  476  QGVDRHLFGLKKLLREGEKLPALYEDPAYAYSSSWYLSTSQLSSEFFNGYGWSQVIDDGF  535
            QGVDRHLFGLK + +EG  LP L+ DPAY  S+ W LSTSQL S    G G+  V+ DG+
Sbjct  476  QGVDRHLFGLKLVAKEGGLLPPLFSDPAYKKSNHWVLSTSQLGSPALRGGGFGPVVPDGY  535

Query  536  GIAYMINENRYNLMSLFLSLFQLLTALYSLNFNIVCKRLG----AERMSYYLNE  585
            GI Y I ++                    ++F+I   +       ER +  L E
Sbjct  536  GIGYNIQDDS-------------------ISFSISSFKSSPETDTERFAKALEE  570



Lambda      K        H        a         alpha
   0.318    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00012399

Length=583
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltr...  812     0.0  


>CDD:459926 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase. 
 
Length=570

 Score = 812 bits (2099),  Expect = 0.0, Method: Composition-based stats.
 Identities = 283/575 (49%), Positives = 364/575 (63%), Gaps = 24/575 (4%)

Query  11   LPVPSLEETGRRYLKSVHAVVSEAEYERTKKAVEAFIRPGGEGQPLQERLLARAADPKIK  70
            LPVP LE+T  RYL+SV  +++E EYERT+K VE F++ GG    LQERLL RA D K  
Sbjct  1    LPVPPLEDTLDRYLESVKPLLTEEEYERTEKLVEEFLKGGGPK--LQERLLERAKDKK--  56

Query  71   NWLTEWWNHAAYLGYRDPVIPYVSYFYSYKDDRLRR-----NPAKRAASITTAALEFKRQ  125
            NWL +WW   AYL YRDP++   + F+ + DD            KRAA++  AAL+FKR 
Sbjct  57   NWLEDWWLDYAYLEYRDPLVLNSNPFFVFPDDPDPLDEPTNTQLKRAANLIYAALKFKRL  116

Query  126  VDDGSLEPEYMRKLPMAMSSYEYMFNCCRIPAEGADYPQKYP--AKENEHIVVVRKNQFF  183
            +D  +L P+    +P+ MS Y+ +FN  RIP +  D  Q +P    E  HIVV+RK QF+
Sbjct  117  LDRETLPPDVEGGVPLCMSQYKRLFNTTRIPGKERDILQHFPDSGVEPRHIVVLRKGQFY  176

Query  184  KVPLVVNGERLNVSELERQFERIYQIAQRA----PPVGVLTVANRDLWADARKKLLAANP  239
            KV ++ +G  L+ +ELE Q +RI   A  +    PPVGVLT  NRD+WA AR++LL  +P
Sbjct  177  KVDVLDSGRPLSPAELEAQLQRILDDASASNPPPPPVGVLTTDNRDVWAKAREELLKLDP  236

Query  240  ANEQALRDIESSGFVVCLDDATP--VTLEERAH-QYWH-GDGTNRWFDKPLQFIINDNGT  295
             N ++L  IES+ FVVCLDDA+P   T  E +H      GDGTNRWFDK LQ I+  NG 
Sbjct  237  GNAESLEAIESALFVVCLDDASPEDKTELEGSHGGGSLGGDGTNRWFDKSLQLIVFKNGR  296

Query  296  AGFMGEHSMMDGSPTHRLNDHLNNLIFNNKIDLSEKPVRSNLPDPRPIEFHLNSEVLEAI  355
            AGF GEHS  DG+P  RLND++   IF NK   S     S  P P  +EF L+ E+  AI
Sbjct  297  AGFNGEHSPADGTPVLRLNDYVLKSIFENKPVSSS-SASSLPPPPEKLEFELDPELKSAI  355

Query  356  DAASKEHRQQMSAHELKVQSYQGYGKGLIKKFKCSPDAYVQMIIQLAYFKMYGKNRPTYE  415
            + A     + +S  +L+V  +  YGK  IKKFK SPDA++QM +QLAY++++GK  PTYE
Sbjct  356  EEAETRFDKLISDLDLRVLEFTDYGKNFIKKFKLSPDAFIQMALQLAYYRLHGKFAPTYE  415

Query  416  SASTRKFQEGRTETIRSVSDESVAFCKAQADPSVPREEVVRLFRAALAAHSKYTALASDG  475
            SASTRKF+ GRTETIRSV+ ESVAF KA  DPS   EE   L RAA+ AH K T  AS G
Sbjct  416  SASTRKFRHGRTETIRSVTPESVAFVKAMLDPSASDEEKRELLRAAVKAHVKLTKEASTG  475

Query  476  QGVDRHLFGLKKLLREGEKLPALYEDPAYAYSSSWYLSTSQLSSEFFNGYGWSQVIDDGF  535
            QGVDRHLFGLK + +EG  LP L+ DPAY  S+ W LSTSQL S    G G+  V+ DG+
Sbjct  476  QGVDRHLFGLKLVAKEGGLLPPLFSDPAYKKSNHWVLSTSQLGSPALRGGGFGPVVPDGY  535

Query  536  GIAYMINENSLNFNIVCKRLG----AERMSYYLNE  566
            GI Y I ++S++F+I   +       ER +  L E
Sbjct  536  GIGYNIQDDSISFSISSFKSSPETDTERFAKALEE  570



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0851    0.140     1.90     42.6     43.6 

Effective search space used: 733764148


Query= TCONS_00012401

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00018296

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            79.0    2e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 79.0 bits (195),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 120/375 (32%), Gaps = 49/375 (13%)

Query  91   IFLVQTSMNFNTSLYSNAL-TGISEEYGVSMQAARCGAMIFLVTYAFGCELWAPWSEELG  149
            +FL         SL   AL   ++E+ G+S         +F + YA    L    S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  150  RKPILQASLFLVNAFQLPVALAPNFASIMVGRALGGLSSAGG-SVTLGMIADLWEADDQQ  208
            R+ +L   L L     L +  A +   ++V R L GL +       L +IAD +  +++ 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  209  YAVACVVFSSVAGSVIGPVVGGFVEEYLPWRWNIWIQLIFGGAVQLAHLVCVPETRTTIL  268
             A+  V      G+ +GP++GG +     WR    I  I      +  L          L
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLL----------L  170

Query  269  MDRIAKRRRKNGEDIWGPNEVLEFRERFAMREILSTWIRPFKMFLTEPIVLSLSLLSGFS  328
                 + +R             E      +    +    P    L         LL GF+
Sbjct  171  PRPPPESKRPKPA---------EEARLSLIVAWKALLRDPVLWLLL------ALLLFGFA  215

Query  329  DALIFMFIQSFGLVYKQWGFGTIELGLSFLPILVGYFIAWISFIPAIKRNIKERRAKPQD  388
               +  ++  +  V    G   +  GL  L +           +  +   +  RR     
Sbjct  216  FFGLLTYLPLYQEVL---GLSALLAGL-LLGLGGLLGAIGRLLLGRLSDRLGRRRR----  267

Query  389  ERAQYESRLWWLLYTAPCLPIGLIGFAWTSQGPPVHWIGTMIFSAIVGIANYSIYMATID  448
                       LL     L +  +G    S      W+   +   ++G   + +    ++
Sbjct  268  -----------LLLALLLLILAALGLLLLSLTLSSLWLLLALL--LLGFG-FGLVFPALN  313

Query  449  YMVCAYGPYSASATG  463
             +V    P     T 
Sbjct  314  ALVSDLAPKEERGTA  328



Lambda      K        H        a         alpha
   0.323    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 763652708


Query= TCONS_00018295

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            79.0    2e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 79.0 bits (195),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 120/375 (32%), Gaps = 49/375 (13%)

Query  91   IFLVQTSMNFNTSLYSNAL-TGISEEYGVSMQAARCGAMIFLVTYAFGCELWAPWSEELG  149
            +FL         SL   AL   ++E+ G+S         +F + YA    L    S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  150  RKPILQASLFLVNAFQLPVALAPNFASIMVGRALGGLSSAGG-SVTLGMIADLWEADDQQ  208
            R+ +L   L L     L +  A +   ++V R L GL +       L +IAD +  +++ 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  209  YAVACVVFSSVAGSVIGPVVGGFVEEYLPWRWNIWIQLIFGGAVQLAHLVCVPETRTTIL  268
             A+  V      G+ +GP++GG +     WR    I  I      +  L          L
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLL----------L  170

Query  269  MDRIAKRRRKNGEDIWGPNEVLEFRERFAMREILSTWIRPFKMFLTEPIVLSLSLLSGFS  328
                 + +R             E      +    +    P    L         LL GF+
Sbjct  171  PRPPPESKRPKPA---------EEARLSLIVAWKALLRDPVLWLLL------ALLLFGFA  215

Query  329  DALIFMFIQSFGLVYKQWGFGTIELGLSFLPILVGYFIAWISFIPAIKRNIKERRAKPQD  388
               +  ++  +  V    G   +  GL  L +           +  +   +  RR     
Sbjct  216  FFGLLTYLPLYQEVL---GLSALLAGL-LLGLGGLLGAIGRLLLGRLSDRLGRRRR----  267

Query  389  ERAQYESRLWWLLYTAPCLPIGLIGFAWTSQGPPVHWIGTMIFSAIVGIANYSIYMATID  448
                       LL     L +  +G    S      W+   +   ++G   + +    ++
Sbjct  268  -----------LLLALLLLILAALGLLLLSLTLSSLWLLLALL--LLGFG-FGLVFPALN  313

Query  449  YMVCAYGPYSASATG  463
             +V    P     T 
Sbjct  314  ALVSDLAPKEERGTA  328



Lambda      K        H        a         alpha
   0.323    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 763652708


Query= TCONS_00012403

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            79.0    2e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 79.0 bits (195),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 70/375 (19%), Positives = 122/375 (33%), Gaps = 49/375 (13%)

Query  91   IFLVQTSMNFNTSLYSNAL-TGISEEYGVSMQAARCGAMIFLVTYAFGCELWAPWSEELG  149
            +FL         SL   AL   ++E+ G+S         +F + YA    L    S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  150  RKPILQASLFLVNAFQLPVALAPNFASIMVGRALGGLSSAGG-SVTLGMIADLWEADDQQ  208
            R+ +L   L L     L +  A +   ++V R L GL +       L +IAD +  +++ 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  209  YAVACVVFSSVAGSVIGPVVGGFVEEYLPWRWNIWIQLIFGGAVQLAHLVCVPETRTTIL  268
             A+  V      G+ +GP++GG +     WR    I  I      +  L          L
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLL----------L  170

Query  269  MDRIAKRRRKNGEDIWGPNEVLEFRERFAMREILSTWIRPFKMFLTEPIVLSLSLLSGFS  328
                 + +R                      E   + I  +K  L +P++  L  L  F 
Sbjct  171  PRPPPESKRPKPA-----------------EEARLSLIVAWKALLRDPVLWLLLALLLFG  213

Query  329  DALIFMFIQSFGLVYKQWGFGTIELGLSFLPILVGYFIAWISFIPAIKRNIKERRAKPQD  388
                F  +    L  +  G   +  GL  L +           +  +   +  RR     
Sbjct  214  -FAFFGLLTYLPLYQEVLGLSALLAGL-LLGLGGLLGAIGRLLLGRLSDRLGRRRR----  267

Query  389  ERAQYESRLWWLLYTAPCLPIGLIGFAWTSQGPPVHWIGTMIFSAIVGIANYSIYMATID  448
                       LL     L +  +G    S      W+   +   ++G   + +    ++
Sbjct  268  -----------LLLALLLLILAALGLLLLSLTLSSLWLLLALL--LLGFG-FGLVFPALN  313

Query  449  YMVCAYGPYSASATG  463
             +V    P     T 
Sbjct  314  ALVSDLAPKEERGTA  328



Lambda      K        H        a         alpha
   0.324    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 711347728


Query= TCONS_00012404

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            79.0    2e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 79.0 bits (195),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 120/375 (32%), Gaps = 49/375 (13%)

Query  91   IFLVQTSMNFNTSLYSNAL-TGISEEYGVSMQAARCGAMIFLVTYAFGCELWAPWSEELG  149
            +FL         SL   AL   ++E+ G+S         +F + YA    L    S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  150  RKPILQASLFLVNAFQLPVALAPNFASIMVGRALGGLSSAGG-SVTLGMIADLWEADDQQ  208
            R+ +L   L L     L +  A +   ++V R L GL +       L +IAD +  +++ 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  209  YAVACVVFSSVAGSVIGPVVGGFVEEYLPWRWNIWIQLIFGGAVQLAHLVCVPETRTTIL  268
             A+  V      G+ +GP++GG +     WR    I  I      +  L          L
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLL----------L  170

Query  269  MDRIAKRRRKNGEDIWGPNEVLEFRERFAMREILSTWIRPFKMFLTEPIVLSLSLLSGFS  328
                 + +R             E      +    +    P    L         LL GF+
Sbjct  171  PRPPPESKRPKPA---------EEARLSLIVAWKALLRDPVLWLLL------ALLLFGFA  215

Query  329  DALIFMFIQSFGLVYKQWGFGTIELGLSFLPILVGYFIAWISFIPAIKRNIKERRAKPQD  388
               +  ++  +  V    G   +  GL  L +           +  +   +  RR     
Sbjct  216  FFGLLTYLPLYQEVL---GLSALLAGL-LLGLGGLLGAIGRLLLGRLSDRLGRRRR----  267

Query  389  ERAQYESRLWWLLYTAPCLPIGLIGFAWTSQGPPVHWIGTMIFSAIVGIANYSIYMATID  448
                       LL     L +  +G    S      W+   +   ++G   + +    ++
Sbjct  268  -----------LLLALLLLILAALGLLLLSLTLSSLWLLLALL--LLGFG-FGLVFPALN  313

Query  449  YMVCAYGPYSASATG  463
             +V    P     T 
Sbjct  314  ALVSDLAPKEERGTA  328



Lambda      K        H        a         alpha
   0.323    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 763652708


Query= TCONS_00012405

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            79.0    2e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 79.0 bits (195),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 120/375 (32%), Gaps = 49/375 (13%)

Query  91   IFLVQTSMNFNTSLYSNAL-TGISEEYGVSMQAARCGAMIFLVTYAFGCELWAPWSEELG  149
            +FL         SL   AL   ++E+ G+S         +F + YA    L    S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  150  RKPILQASLFLVNAFQLPVALAPNFASIMVGRALGGLSSAGG-SVTLGMIADLWEADDQQ  208
            R+ +L   L L     L +  A +   ++V R L GL +       L +IAD +  +++ 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  209  YAVACVVFSSVAGSVIGPVVGGFVEEYLPWRWNIWIQLIFGGAVQLAHLVCVPETRTTIL  268
             A+  V      G+ +GP++GG +     WR    I  I      +  L          L
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLL----------L  170

Query  269  MDRIAKRRRKNGEDIWGPNEVLEFRERFAMREILSTWIRPFKMFLTEPIVLSLSLLSGFS  328
                 + +R             E      +    +    P    L         LL GF+
Sbjct  171  PRPPPESKRPKPA---------EEARLSLIVAWKALLRDPVLWLLL------ALLLFGFA  215

Query  329  DALIFMFIQSFGLVYKQWGFGTIELGLSFLPILVGYFIAWISFIPAIKRNIKERRAKPQD  388
               +  ++  +  V    G   +  GL  L +           +  +   +  RR     
Sbjct  216  FFGLLTYLPLYQEVL---GLSALLAGL-LLGLGGLLGAIGRLLLGRLSDRLGRRRR----  267

Query  389  ERAQYESRLWWLLYTAPCLPIGLIGFAWTSQGPPVHWIGTMIFSAIVGIANYSIYMATID  448
                       LL     L +  +G    S      W+   +   ++G   + +    ++
Sbjct  268  -----------LLLALLLLILAALGLLLLSLTLSSLWLLLALL--LLGFG-FGLVFPALN  313

Query  449  YMVCAYGPYSASATG  463
             +V    P     T 
Sbjct  314  ALVSDLAPKEERGTA  328



Lambda      K        H        a         alpha
   0.323    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 763652708


Query= TCONS_00012406

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            79.0    2e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 79.0 bits (195),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 70/375 (19%), Positives = 122/375 (33%), Gaps = 49/375 (13%)

Query  91   IFLVQTSMNFNTSLYSNAL-TGISEEYGVSMQAARCGAMIFLVTYAFGCELWAPWSEELG  149
            +FL         SL   AL   ++E+ G+S         +F + YA    L    S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  150  RKPILQASLFLVNAFQLPVALAPNFASIMVGRALGGLSSAGG-SVTLGMIADLWEADDQQ  208
            R+ +L   L L     L +  A +   ++V R L GL +       L +IAD +  +++ 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  209  YAVACVVFSSVAGSVIGPVVGGFVEEYLPWRWNIWIQLIFGGAVQLAHLVCVPETRTTIL  268
             A+  V      G+ +GP++GG +     WR    I  I      +  L          L
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLL----------L  170

Query  269  MDRIAKRRRKNGEDIWGPNEVLEFRERFAMREILSTWIRPFKMFLTEPIVLSLSLLSGFS  328
                 + +R                      E   + I  +K  L +P++  L  L  F 
Sbjct  171  PRPPPESKRPKPA-----------------EEARLSLIVAWKALLRDPVLWLLLALLLFG  213

Query  329  DALIFMFIQSFGLVYKQWGFGTIELGLSFLPILVGYFIAWISFIPAIKRNIKERRAKPQD  388
                F  +    L  +  G   +  GL  L +           +  +   +  RR     
Sbjct  214  -FAFFGLLTYLPLYQEVLGLSALLAGL-LLGLGGLLGAIGRLLLGRLSDRLGRRRR----  267

Query  389  ERAQYESRLWWLLYTAPCLPIGLIGFAWTSQGPPVHWIGTMIFSAIVGIANYSIYMATID  448
                       LL     L +  +G    S      W+   +   ++G   + +    ++
Sbjct  268  -----------LLLALLLLILAALGLLLLSLTLSSLWLLLALL--LLGFG-FGLVFPALN  313

Query  449  YMVCAYGPYSASATG  463
             +V    P     T 
Sbjct  314  ALVSDLAPKEERGTA  328



Lambda      K        H        a         alpha
   0.324    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 711347728


Query= TCONS_00012407

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            79.0    2e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 79.0 bits (195),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 70/375 (19%), Positives = 122/375 (33%), Gaps = 49/375 (13%)

Query  91   IFLVQTSMNFNTSLYSNAL-TGISEEYGVSMQAARCGAMIFLVTYAFGCELWAPWSEELG  149
            +FL         SL   AL   ++E+ G+S         +F + YA    L    S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  150  RKPILQASLFLVNAFQLPVALAPNFASIMVGRALGGLSSAGG-SVTLGMIADLWEADDQQ  208
            R+ +L   L L     L +  A +   ++V R L GL +       L +IAD +  +++ 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  209  YAVACVVFSSVAGSVIGPVVGGFVEEYLPWRWNIWIQLIFGGAVQLAHLVCVPETRTTIL  268
             A+  V      G+ +GP++GG +     WR    I  I      +  L          L
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLL----------L  170

Query  269  MDRIAKRRRKNGEDIWGPNEVLEFRERFAMREILSTWIRPFKMFLTEPIVLSLSLLSGFS  328
                 + +R                      E   + I  +K  L +P++  L  L  F 
Sbjct  171  PRPPPESKRPKPA-----------------EEARLSLIVAWKALLRDPVLWLLLALLLFG  213

Query  329  DALIFMFIQSFGLVYKQWGFGTIELGLSFLPILVGYFIAWISFIPAIKRNIKERRAKPQD  388
                F  +    L  +  G   +  GL  L +           +  +   +  RR     
Sbjct  214  -FAFFGLLTYLPLYQEVLGLSALLAGL-LLGLGGLLGAIGRLLLGRLSDRLGRRRR----  267

Query  389  ERAQYESRLWWLLYTAPCLPIGLIGFAWTSQGPPVHWIGTMIFSAIVGIANYSIYMATID  448
                       LL     L +  +G    S      W+   +   ++G   + +    ++
Sbjct  268  -----------LLLALLLLILAALGLLLLSLTLSSLWLLLALL--LLGFG-FGLVFPALN  313

Query  449  YMVCAYGPYSASATG  463
             +V    P     T 
Sbjct  314  ALVSDLAPKEERGTA  328



Lambda      K        H        a         alpha
   0.324    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 711347728


Query= TCONS_00018297

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            79.0    2e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 79.0 bits (195),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 120/375 (32%), Gaps = 49/375 (13%)

Query  91   IFLVQTSMNFNTSLYSNAL-TGISEEYGVSMQAARCGAMIFLVTYAFGCELWAPWSEELG  149
            +FL         SL   AL   ++E+ G+S         +F + YA    L    S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  150  RKPILQASLFLVNAFQLPVALAPNFASIMVGRALGGLSSAGG-SVTLGMIADLWEADDQQ  208
            R+ +L   L L     L +  A +   ++V R L GL +       L +IAD +  +++ 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  209  YAVACVVFSSVAGSVIGPVVGGFVEEYLPWRWNIWIQLIFGGAVQLAHLVCVPETRTTIL  268
             A+  V      G+ +GP++GG +     WR    I  I      +  L          L
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLL----------L  170

Query  269  MDRIAKRRRKNGEDIWGPNEVLEFRERFAMREILSTWIRPFKMFLTEPIVLSLSLLSGFS  328
                 + +R             E      +    +    P    L         LL GF+
Sbjct  171  PRPPPESKRPKPA---------EEARLSLIVAWKALLRDPVLWLLL------ALLLFGFA  215

Query  329  DALIFMFIQSFGLVYKQWGFGTIELGLSFLPILVGYFIAWISFIPAIKRNIKERRAKPQD  388
               +  ++  +  V    G   +  GL  L +           +  +   +  RR     
Sbjct  216  FFGLLTYLPLYQEVL---GLSALLAGL-LLGLGGLLGAIGRLLLGRLSDRLGRRRR----  267

Query  389  ERAQYESRLWWLLYTAPCLPIGLIGFAWTSQGPPVHWIGTMIFSAIVGIANYSIYMATID  448
                       LL     L +  +G    S      W+   +   ++G   + +    ++
Sbjct  268  -----------LLLALLLLILAALGLLLLSLTLSSLWLLLALL--LLGFG-FGLVFPALN  313

Query  449  YMVCAYGPYSASATG  463
             +V    P     T 
Sbjct  314  ALVSDLAPKEERGTA  328



Lambda      K        H        a         alpha
   0.323    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 763652708


Query= TCONS_00018299

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460161 pfam01329, Pterin_4a, Pterin 4 alpha carbinolamine deh...  96.4    4e-26


>CDD:460161 pfam01329, Pterin_4a, Pterin 4 alpha carbinolamine dehydratase. 
 Pterin 4 alpha carbinolamine dehydratase is also known as 
DCoH (dimerization cofactor of hepatocyte nuclear factor 1-alpha).
Length=88

 Score = 96.4 bits (241),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query  144  DAEQVQGGLERLLENGWVLDGERMGIKKTFYFRSYFKAVSFLNVVASQSATKKHHPTMTV  203
              E+++  L  L   GW L G+   +++TF F+ + +A++F+N VA  +  + HHP +T 
Sbjct  2    TEEEIEAALAEL--PGWKL-GDGGALERTFKFKDFKEAIAFVNRVALLAEAEGHHPDITN  58

Query  204  GIGSVDVHWTTHNPRGLSSKDIAMAEHCEE  233
                V V  TTH+  GL+  D  +A   +E
Sbjct  59   VYNKVTVTLTTHDAGGLTENDFILAAKIDE  88



Lambda      K        H        a         alpha
   0.309    0.126    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00018300

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00018301

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00012409

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00012410

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460161 pfam01329, Pterin_4a, Pterin 4 alpha carbinolamine deh...  56.7    1e-11


>CDD:460161 pfam01329, Pterin_4a, Pterin 4 alpha carbinolamine dehydratase. 
 Pterin 4 alpha carbinolamine dehydratase is also known as 
DCoH (dimerization cofactor of hepatocyte nuclear factor 1-alpha).
Length=88

 Score = 56.7 bits (138),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 20/61 (33%), Positives = 36/61 (59%), Gaps = 3/61 (5%)

Query  144  DAEQVQGGLERLLENGWVLDGERMGIKKTFYFRSYFKAVSFLNVVASQSATKKHHPTMTV  203
              E+++  L  L   GW L G+   +++TF F+ + +A++F+N VA  +  + HHP +T 
Sbjct  2    TEEEIEAALAEL--PGWKL-GDGGALERTFKFKDFKEAIAFVNRVALLAEAEGHHPDITN  58

Query  204  V  204
            V
Sbjct  59   V  59



Lambda      K        H        a         alpha
   0.309    0.126    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00018302

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460161 pfam01329, Pterin_4a, Pterin 4 alpha carbinolamine deh...  91.4    3e-24


>CDD:460161 pfam01329, Pterin_4a, Pterin 4 alpha carbinolamine dehydratase. 
 Pterin 4 alpha carbinolamine dehydratase is also known as 
DCoH (dimerization cofactor of hepatocyte nuclear factor 1-alpha).
Length=88

 Score = 91.4 bits (228),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query  144  DAEQVQGGLERLLENGWVLDGERMGIKKTFYFRSYFKA-SFLNVVASQSATKKHHPTMTV  202
              E+++  L  L   GW L G+   +++TF F+ + +A +F+N VA  +  + HHP +T 
Sbjct  2    TEEEIEAALAEL--PGWKL-GDGGALERTFKFKDFKEAIAFVNRVALLAEAEGHHPDITN  58

Query  203  RIGSVDVHWTTHNPRGLSSKDIAMAEHCEE  232
                V V  TTH+  GL+  D  +A   +E
Sbjct  59   VYNKVTVTLTTHDAGGLTENDFILAAKIDE  88



Lambda      K        H        a         alpha
   0.309    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00018303

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00018304

Length=726


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 919656064


Query= TCONS_00012411

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461073 pfam03839, Sec62, Translocation protein Sec62              260     5e-90


>CDD:461073 pfam03839, Sec62, Translocation protein Sec62.  
Length=191

 Score = 260 bits (667),  Expect = 5e-90, Method: Composition-based stats.
 Identities = 109/187 (58%), Positives = 130/187 (70%), Gaps = 2/187 (1%)

Query  5    VKRAIRALESPAYAKAAAKKNSLLPPVTDRASAENVFKLLPLSLLALRVSKVDPHAGHNH  64
             KR +RAL+SPAY K + K+ SLLPPVTDR  AENVFKLL  S LAL V+K+        
Sbjct  5    AKRVVRALKSPAYKKKSKKQPSLLPPVTDREKAENVFKLLIKSQLALPVTKLHEGEKKAK  64

Query  65   AKPKTRVKGLWTVKIEQHQETDPMMHYVWLYEGPQWKQKAMAAAVVAGIFAVVLFPLWPM  124
             K K   KG  T++I Q Q  DP  +YVW+YE   WK K     VV GI AVVLFPLWP 
Sbjct  65   DKKKKPNKGKPTLEIHQKQVFDPDEYYVWIYEPKPWKTKLYGILVVLGIIAVVLFPLWPP  124

Query  125  MLRQGVWYLSVGMMGLLGLFFAMSIFRLILFCVTVFVVPPG--LWLFPNLFEDVGFIDSF  182
             +R+GV+YLS+G +GLLGLFFA++I RLILF +T  V P G   WLFPNLFEDVGF DSF
Sbjct  125  SMRRGVYYLSMGALGLLGLFFALAIVRLILFLITWLVTPGGHHFWLFPNLFEDVGFFDSF  184

Query  183  KPLWGWQ  189
            +PL+GW+
Sbjct  185  RPLYGWE  191



Lambda      K        H        a         alpha
   0.328    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00012412

Length=740


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00012413

Length=547


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690414096


Query= TCONS_00018305

Length=537


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00018306

Length=537


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00018307

Length=537


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0831    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00012414

Length=547


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690414096


Query= TCONS_00018308

Length=537


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00012416

Length=152
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369288 pfam07249, Cerato-platanin, Cerato-platanin. This fami...  210     4e-72


>CDD:369288 pfam07249, Cerato-platanin, Cerato-platanin.  This family contains 
a number of fungal cerato-platanin phytotoxic proteins 
approximately 150 residues long. Cerato-platanin contains four 
cysteine residues that form two disulphide bonds.
Length=118

 Score = 210 bits (535),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 80/116 (69%), Positives = 89/116 (77%), Gaps = 1/116 (1%)

Query  34   SVSYDPRYDNAGTSMNDVSCSNGVNGLVTK-WPTFGSVPGFARIGGAPTIPGWNSPNCGK  92
            SVSYD  YD+   SM  VSCS+GVNGL+TK WPT G+VP F RIGGA  I GWNSPNCG 
Sbjct  1    SVSYDTGYDDPNRSMTVVSCSDGVNGLITKYWPTQGAVPNFPRIGGASGIAGWNSPNCGT  60

Query  93   CYKLQYEQNTIYVTAIDAAPGGFNIATSAMDQLTNGMAVELGRVQATYEEADPSHC  148
            CYK+ Y   TIYV AID A GGFNIA SAM++LTNG AVELGRV AT ++A PSHC
Sbjct  61   CYKITYNGKTIYVLAIDHAGGGFNIAKSAMNELTNGQAVELGRVDATVQQAAPSHC  116



Lambda      K        H        a         alpha
   0.314    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00018309

Length=152
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369288 pfam07249, Cerato-platanin, Cerato-platanin. This fami...  210     4e-72


>CDD:369288 pfam07249, Cerato-platanin, Cerato-platanin.  This family contains 
a number of fungal cerato-platanin phytotoxic proteins 
approximately 150 residues long. Cerato-platanin contains four 
cysteine residues that form two disulphide bonds.
Length=118

 Score = 210 bits (535),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 80/116 (69%), Positives = 89/116 (77%), Gaps = 1/116 (1%)

Query  34   SVSYDPRYDNAGTSMNDVSCSNGVNGLVTK-WPTFGSVPGFARIGGAPTIPGWNSPNCGK  92
            SVSYD  YD+   SM  VSCS+GVNGL+TK WPT G+VP F RIGGA  I GWNSPNCG 
Sbjct  1    SVSYDTGYDDPNRSMTVVSCSDGVNGLITKYWPTQGAVPNFPRIGGASGIAGWNSPNCGT  60

Query  93   CYKLQYEQNTIYVTAIDAAPGGFNIATSAMDQLTNGMAVELGRVQATYEEADPSHC  148
            CYK+ Y   TIYV AID A GGFNIA SAM++LTNG AVELGRV AT ++A PSHC
Sbjct  61   CYKITYNGKTIYVLAIDHAGGGFNIAKSAMNELTNGQAVELGRVDATVQQAAPSHC  116



Lambda      K        H        a         alpha
   0.314    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00012419

Length=537


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00012418

Length=537


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00012422

Length=324


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00012421

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00012423

Length=65
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          58.3    9e-13


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 58.3 bits (142),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 0/44 (0%)

Query  12   DIEDGSTLRRGKPAAHLKFGLGQTVNAATFLHAEAVRYTLEHLG  55
            DI D S LRRG+P  H  FG    +N   +L+A A +   +   
Sbjct  59   DIMDNSDLRRGQPTWHRIFGNAIAINDGDYLYALAFQLLAKLFP  102



Lambda      K        H        a         alpha
   0.323    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00012424

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00012426

Length=700


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 895197530


Query= TCONS_00012427

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            98.3    3e-23


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 98.3 bits (245),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 81/326 (25%), Positives = 136/326 (42%), Gaps = 10/326 (3%)

Query  12   GVTPAQIDLIGTLAVSMMSLGAPFASGWCKSYSPRRITLAGTIIFATANVLASFSQHLWQ  71
            G++P +I L+ TL     +L  P A      +  RR+ L G ++FA   +L  F+  LW 
Sbjct  28   GISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWL  87

Query  72   FVLTQGVLLGCGTCLTYITAVTVAPGWFT-THRGLAIGVISSGTGVGGVVWAPALRALNA  130
             ++   VL G G    +  A+ +   WF    RG A+G++S+G G+G  +       L +
Sbjct  88   LLVL-RVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLAS  146

Query  131  RIGFRHTLQLTGGVSSVLLGAASLVLDWDPRTQRHIDAERAAVPSSRLRVTLVDWRVART  190
              G+R    +   +S   L AA L+L   P  +                  +V W+    
Sbjct  147  LFGWRAAFLILAILS---LLAAVLLLLPRPPPESKRPKPAEEAR----LSLIVAWKALLR  199

Query  191  RKFLAQCLSAGLQGAAYYAPVYFMSTYARTLGYSAATGAMFISISNASSAVGKVVIGHVA  250
               L   L+  L G A++  + ++  Y   LG SA    + + +     A+G++++G ++
Sbjct  200  DPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLS  259

Query  251  DRAGRINVFLLTTLMSAIATLGLWLPSTVSGGKALFVAFAMFYGVFAGAYVSLFPATLVE  310
            DR GR    LL  L+  +A LGL L S       L +A  +  G   G       A + +
Sbjct  260  DRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLL-GFGFGLVFPALNALVSD  318

Query  311  LFGVEHFASVNGFLYMVRGFAALVGT  336
            L   E   + +G           +G 
Sbjct  319  LAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00012428

Length=221


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00012429

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00012430

Length=271
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  61.4    6e-13
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  59.6    3e-12


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 61.4 bits (150),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 49/112 (44%), Gaps = 17/112 (15%)

Query  110  LDLGCGRGLVLLKIAQIKKRLASSESPVPPAYGIDLFVKGDQSGNAPLATYKNAAALGVC  169
            LDLGCG G + L +A   +R  +         G+DL      S        + AA  G+ 
Sbjct  2    LDLGCGTGRLTLALA---RRGGAR------VTGVDL------SPEMLERARERAAEAGL-  45

Query  170  EQTVLHTGSVADLPFCDGVFSLVTASLSIHNADKATRKKAIGEAARVLVSGG  221
                   G   DLPF DG F LV +S  +H+      + A+ E ARVL  GG
Sbjct  46   -NVEFVQGDAEDLPFPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 59.6 bits (145),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 52/116 (45%), Gaps = 22/116 (19%)

Query  110  LDLGCGRGLVLLKIAQIKKRLASSESPVPPAYGIDLFVKGDQSGNAPLATYKNAAALGVC  169
            LD+GCG GL+   +A++  R+           G+D+  +            + A      
Sbjct  1    LDVGCGTGLLTELLARLGARV----------TGVDISPEML----------ELAREKAPR  40

Query  170  EQTVLHTGSVADLPFCDGVFSLVTASLSIHNADKATRKKAIGEAARVLVSGGYLVV  225
            E      G   DLPF D  F LV +S  +H+ +    ++A+ E ARVL  GG L++
Sbjct  41   EGLTFVVGDAEDLPFPDNSFDLVLSSEVLHHVE--DPERALREIARVLKPGGILII  94



Lambda      K        H        a         alpha
   0.318    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00012431

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.142    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00012432

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:281639 pfam03664, Glyco_hydro_62, Glycosyl hydrolase family 6...  196     7e-62


>CDD:281639 pfam03664, Glyco_hydro_62, Glycosyl hydrolase family 62.  Family 
of alpha -L-arabinofuranosidase (EC 3.2.1.55). This enzyme 
hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl 
side chains from arabinoxylan and arabinan.
Length=272

 Score = 196 bits (500),  Expect = 7e-62, Method: Composition-based stats.
 Identities = 116/286 (41%), Positives = 161/286 (56%), Gaps = 24/286 (8%)

Query  19   PSSFKWSSSGPLVEPKKDGRNIAAIKDPSIVKVDGTYHVFASTA-TKSGYNLVYFN-FKD  76
            PS++ W+S+G L +PK      AA+KD + V  +G + V+AS   T S Y  + F+ F D
Sbjct  4    PSTYSWTSTGALAQPKS---GWAALKDFTTVVYNGKHIVYASNYDTGSNYGSMAFSPFSD  60

Query  77   FSQANQATFHYLDQTPIGSGYRAAPQVFFFKPHNLWYLVFQNGNA--AYSTNPNIANPAG  134
            +S    A+        +      AP +F+F P  +W L +Q G    +Y T+ +  NP G
Sbjct  61   WSDMASASQTATSFKAV------APTLFYFAPKKIWVLAYQWGPTTFSYRTSSDPTNPNG  114

Query  135  WSKPKNFFSSMPSIIAQNKGNGNWVDMWTICDSSNCYLFSSDDNGHLYRSQTSLANFPNG  194
            WS P+  F+    I   + G    +D   I D +N YLF + DNG +YRS   + NFP  
Sbjct  115  WSAPQPLFTG--KITGSSTGA---IDQTVIGDDTNMYLFFAGDNGKIYRSSMPIGNFPGS  169

Query  195  MGN-TVIALSDSNKNALFEASNVYHT-GNGEYLLLVEAIGSDGQRYFRSWTSNSLTGSWK  252
             G+     +SD+  N LFEA  VY   G  +YL++VEA+GS+GQRYFRS+T++SL G W 
Sbjct  170  FGSQYTTIMSDTTNN-LFEAVQVYTVKGQNKYLMIVEAMGSNGQRYFRSFTASSLNGEWT  228

Query  253  GLANTEANPFARSNNVAFSGTPWTKSISHGELIRTQTDQTMTISPC  298
              A TE+NPFA   N   SG  WT  ISHG+L+R   DQTMT+ PC
Sbjct  229  PQAATESNPFAGKAN---SGATWTNDISHGDLVRNNPDQTMTVDPC  271



Lambda      K        H        a         alpha
   0.316    0.131    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00018312

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00012433

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00018313

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00012434

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00018314

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00018315

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00018316

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00012435

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00012436

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.119    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00012437

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00012439

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00012440

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00018320

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00018319

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00012441

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00012443

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00012442

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00018321

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00018322

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00018323

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00012446

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00012445

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00012444

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00018324

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00018325

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00018328

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00018327

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00018326

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00012448

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00012449

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00012451

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0783    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00012450

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00018330

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00012452

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00012453

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00012454

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00012455

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00018334

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00018333

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00012457

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00012456

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00018335

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00018336

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00018337

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00012458

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:278624 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl tr...  80.1    2e-16


>CDD:278624 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase. 
 
Length=499

 Score = 80.1 bits (198),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 94/221 (43%), Gaps = 38/221 (17%)

Query  227  IHLVNSFFGLEPPKPV-PPLIF-------PAGPIFSDSWRSLDAGLEEFLRTRASVVFVA  278
            + L+ S++ LE P+P+ P + F       PA P+  +    + +  E        VV  +
Sbjct  228  VWLIRSYWDLEFPRPLLPNMDFIGGLHCKPAKPLPQEMEAFVQSSGEH------GVVVFS  281

Query  279  FGTHVI-LSYEVVLKILQGLE--GAMCAGHIDGVVWAMRADSASEINGTSVLELLQNRHS  335
             G+ V  +  E    I   L             V+W       S               +
Sbjct  282  LGSMVSNIPEEKANAIASALAQIPQK-------VLWRFDGTKPS------------TLGN  322

Query  336  AWLFVEEAPQRAILDHQSVVLFFTHAGPSSANEALYHGVPMVAMAIYGDQIHNSMRLAAA  395
                V+  PQ  +L H     F THAG +   EA+ HGVPMV M ++GDQ+ N+  + A 
Sbjct  323  NTRLVKWLPQNDLLGHPKTRAFITHAGSNGVYEAICHGVPMVGMPLFGDQMDNAKHMEAK  382

Query  396  GVAVAIDKHTFTSQQISSSVAAIVTDAQGEFRRNVRRMQRI  436
            G AV ++  T TS+ + +++  ++ D    ++ N+ R+  I
Sbjct  383  GAAVTLNVLTMTSEDLLNALKEVINDPS--YKENIMRLSSI  421



Lambda      K        H        a         alpha
   0.324    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 654076512


Query= TCONS_00012459

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:278624 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl tr...  79.4    7e-17


>CDD:278624 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase. 
 
Length=499

 Score = 79.4 bits (196),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 94/221 (43%), Gaps = 38/221 (17%)

Query  47   IHLVNSFFGLEPPKPV-PPLIF-------PAGPIFSDSWRSLDAGLEEFLRTRASVVFVA  98
            + L+ S++ LE P+P+ P + F       PA P+  +    + +  E        VV  +
Sbjct  228  VWLIRSYWDLEFPRPLLPNMDFIGGLHCKPAKPLPQEMEAFVQSSGEH------GVVVFS  281

Query  99   FGTHVI-LSYEVVLKILQGLE--GAMCAGHIDGVVWAMRADSASEINGTSVLELLQNRHS  155
             G+ V  +  E    I   L             V+W       S               +
Sbjct  282  LGSMVSNIPEEKANAIASALAQIPQK-------VLWRFDGTKPS------------TLGN  322

Query  156  AWLFVEEAPQRAILDHQSVVLFFTHAGPSSANEALYHGVPMVAMAIYGDQIHNSMRLAAA  215
                V+  PQ  +L H     F THAG +   EA+ HGVPMV M ++GDQ+ N+  + A 
Sbjct  323  NTRLVKWLPQNDLLGHPKTRAFITHAGSNGVYEAICHGVPMVGMPLFGDQMDNAKHMEAK  382

Query  216  GVAVAIDKHTFTSQQISSSVAAIVTDAQGEFRRNVRRMQRI  256
            G AV ++  T TS+ + +++  ++ D    ++ N+ R+  I
Sbjct  383  GAAVTLNVLTMTSEDLLNALKEVINDPS--YKENIMRLSSI  421



Lambda      K        H        a         alpha
   0.324    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00012460

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:405606 pfam14938, SNAP, Soluble NSF attachment protein, SNAP....  407     2e-145


>CDD:405606 pfam14938, SNAP, Soluble NSF attachment protein, SNAP.  The soluble 
NSF attachment protein (SNAP) proteins are involved in 
vesicular transport between the endoplasmic reticulum and 
Golgi apparatus. They act as adaptors between SNARE (integral 
membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive 
factor). They are structurally similar to TPR repeats.
Length=273

 Score = 407 bits (1049),  Expect = 2e-145, Method: Composition-based stats.
 Identities = 159/274 (58%), Positives = 212/274 (77%), Gaps = 1/274 (0%)

Query  11   KADKALQGASSGLSFFGGRTEKYENAADLYTQAANAFRVQKLNKEAGLAFEKAAAIQKQN  70
            KA+K L+ +S   SFFG ++ KYE AADLY QAANA+++ K  +EAG AFEKAA  Q + 
Sbjct  1    KAEKKLKSSSGFFSFFGSKSSKYEEAADLYIQAANAYKLAKNWEEAGEAFEKAAECQLK-  59

Query  71   LNEPDDAANTLQEAFKVYRKSDPEDAARVLSAAIQHYVLKGNLRRAATQQQHLAEVYEVE  130
            L   D+AAN   EA K Y+K DPE+A R L  AI+ Y   G  RRAA  ++ +AE+YE E
Sbjct  60   LGSKDEAANAYVEAAKCYKKVDPEEAVRALEKAIEIYTEMGRFRRAAKHKKEIAELYEQE  119

Query  131  LGDMKKALEAYEKAAEWFDGDNAEALANKHYLKVADLAALEGDYYKAIENYERIGRSSIT  190
            LGD++KA+EAYE+AA+W++G+ A ALANK YLKVADL+A   DY KAIE YE++ ++S+ 
Sbjct  120  LGDLEKAIEAYEQAADWYEGEGASALANKCYLKVADLSAELEDYPKAIEIYEKVAKNSLE  179

Query  191  NNLMKWSVKDYFLKAGICHLASKDIVAANRALESYRDTDHTFASTREHQLLVDLVQAIEA  250
            NNL+K+SVK+YFLKAG+CHLA+ D+VAA RALE Y + D +FA TRE++LL DL++A+E 
Sbjct  180  NNLLKYSVKEYFLKAGLCHLAAGDLVAAQRALERYEELDPSFADTREYKLLNDLLEAVEE  239

Query  251  GDQEAFSDKLFQYDQLSKLDKWKTTLLLRIKSNI  284
            GD EAF+D +F++DQ+SKLDKWKTT+LL+IK+ I
Sbjct  240  GDVEAFTDAVFEFDQISKLDKWKTTILLKIKNTI  273



Lambda      K        H        a         alpha
   0.314    0.128    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00018338

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:405606 pfam14938, SNAP, Soluble NSF attachment protein, SNAP....  407     2e-145


>CDD:405606 pfam14938, SNAP, Soluble NSF attachment protein, SNAP.  The soluble 
NSF attachment protein (SNAP) proteins are involved in 
vesicular transport between the endoplasmic reticulum and 
Golgi apparatus. They act as adaptors between SNARE (integral 
membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive 
factor). They are structurally similar to TPR repeats.
Length=273

 Score = 407 bits (1049),  Expect = 2e-145, Method: Composition-based stats.
 Identities = 159/274 (58%), Positives = 212/274 (77%), Gaps = 1/274 (0%)

Query  11   KADKALQGASSGLSFFGGRTEKYENAADLYTQAANAFRVQKLNKEAGLAFEKAAAIQKQN  70
            KA+K L+ +S   SFFG ++ KYE AADLY QAANA+++ K  +EAG AFEKAA  Q + 
Sbjct  1    KAEKKLKSSSGFFSFFGSKSSKYEEAADLYIQAANAYKLAKNWEEAGEAFEKAAECQLK-  59

Query  71   LNEPDDAANTLQEAFKVYRKSDPEDAARVLSAAIQHYVLKGNLRRAATQQQHLAEVYEVE  130
            L   D+AAN   EA K Y+K DPE+A R L  AI+ Y   G  RRAA  ++ +AE+YE E
Sbjct  60   LGSKDEAANAYVEAAKCYKKVDPEEAVRALEKAIEIYTEMGRFRRAAKHKKEIAELYEQE  119

Query  131  LGDMKKALEAYEKAAEWFDGDNAEALANKHYLKVADLAALEGDYYKAIENYERIGRSSIT  190
            LGD++KA+EAYE+AA+W++G+ A ALANK YLKVADL+A   DY KAIE YE++ ++S+ 
Sbjct  120  LGDLEKAIEAYEQAADWYEGEGASALANKCYLKVADLSAELEDYPKAIEIYEKVAKNSLE  179

Query  191  NNLMKWSVKDYFLKAGICHLASKDIVAANRALESYRDTDHTFASTREHQLLVDLVQAIEA  250
            NNL+K+SVK+YFLKAG+CHLA+ D+VAA RALE Y + D +FA TRE++LL DL++A+E 
Sbjct  180  NNLLKYSVKEYFLKAGLCHLAAGDLVAAQRALERYEELDPSFADTREYKLLNDLLEAVEE  239

Query  251  GDQEAFSDKLFQYDQLSKLDKWKTTLLLRIKSNI  284
            GD EAF+D +F++DQ+SKLDKWKTT+LL+IK+ I
Sbjct  240  GDVEAFTDAVFEFDQISKLDKWKTTILLKIKNTI  273



Lambda      K        H        a         alpha
   0.314    0.128    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00012461

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00018339

Length=683
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:368366 pfam05277, DUF726, Protein of unknown function (DUF726...  391     4e-132


>CDD:368366 pfam05277, DUF726, Protein of unknown function (DUF726).  This 
family consists of several uncharacterized eukaryotic proteins.
Length=341

 Score = 391 bits (1006),  Expect = 4e-132, Method: Composition-based stats.
 Identities = 168/356 (47%), Positives = 233/356 (65%), Gaps = 21/356 (6%)

Query  264  RKWK----VGIASVAGAALIGITGGLAAPLVAAGLGTVMGGLGLGATAAAGYLGALAGSG  319
            R+ K    +G+A + G ALIG+TGGLAAPLVAAG+G + GG GLG +A        +   
Sbjct  1    RRIKRYILIGLAGLGGGALIGLTGGLAAPLVAAGIGALFGGFGLGGSAGFLASTGGSA--  58

Query  320  VVVGGLFGAYGGRMTGRMVDKYAREVDDFAFLPIRGSRHRSEDEREAAHQDHRLRVTIGV  379
             V+  LFGA G  +TG  + K    +  F F+P+ G+R  S            L VT+  
Sbjct  59   -VITALFGAAGAGLTGYKMSKRVGAIKTFEFIPLSGNRSLS------------LTVTVSG  105

Query  380  TGWLTEEDNFVIPWRVIG-AESEVFGLRWETEPLMNLGNALDLLVTSAAWT-AGEQVLKK  437
             G L +ED+   PWR +     +++ L+WE E L  LGNAL+ ++ S A++ A +++L +
Sbjct  106  WGELGDEDDVTNPWRALDPNCGDLYALKWEVEYLKELGNALETILASEAFSMAKQEILGR  165

Query  438  TFLSQLLTAVALPLGLLKVARVVDNPFSVAKARADKAGEVLADALISKVQGERPVTLIGY  497
            T L+ L+ A+  PL LLKV  ++DNP++V   RA KAGE+LADAL S+  G+RPVTLIG+
Sbjct  166  TVLTSLVAALTWPLALLKVGSILDNPWNVCLDRAAKAGEILADALCSRAHGQRPVTLIGF  225

Query  498  SLGSRVIFACLQSLAKRRAFGLVESAILMGAPTPSNSEQWCRIRSVVSGRLVNVYSENDS  557
            SLG+RVIF CL  LAKR+AFG++E+ ILMG P  ++++ W ++RSVVSGR VN YSEND 
Sbjct  226  SLGARVIFYCLLELAKRKAFGIIENVILMGTPATTSAKVWEKMRSVVSGRFVNGYSENDW  285

Query  558  VLALLYRTSSLQLGVAGLQPVEGVSGVENLDVSDLISGHLRYQFLVGRILSVVGLE  613
            +L  LYRT S Q  VAGL P+E V G+EN+DVS ++SGHL Y+ L+ +IL  +G E
Sbjct  286  LLGFLYRTMSAQFRVAGLGPIENVPGIENVDVSGIVSGHLDYRKLMPKILKAIGFE  341



Lambda      K        H        a         alpha
   0.315    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 870126100


Query= TCONS_00018340

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:405606 pfam14938, SNAP, Soluble NSF attachment protein, SNAP....  397     1e-141


>CDD:405606 pfam14938, SNAP, Soluble NSF attachment protein, SNAP.  The soluble 
NSF attachment protein (SNAP) proteins are involved in 
vesicular transport between the endoplasmic reticulum and 
Golgi apparatus. They act as adaptors between SNARE (integral 
membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive 
factor). They are structurally similar to TPR repeats.
Length=273

 Score = 397 bits (1023),  Expect = 1e-141, Method: Composition-based stats.
 Identities = 155/267 (58%), Positives = 206/267 (77%), Gaps = 1/267 (0%)

Query  11   KADKALQGASSGLSFFGGRTEKYENAADLYTQAANAFRVQKLNKEAGLAFEKAAAIQKQN  70
            KA+K L+ +S   SFFG ++ KYE AADLY QAANA+++ K  +EAG AFEKAA  Q + 
Sbjct  1    KAEKKLKSSSGFFSFFGSKSSKYEEAADLYIQAANAYKLAKNWEEAGEAFEKAAECQLK-  59

Query  71   LNEPDDAANTLQEAFKVYRKSDPEDAARVLSAAIQHYVLKGNLRRAATQQQHLAEVYEVE  130
            L   D+AAN   EA K Y+K DPE+A R L  AI+ Y   G  RRAA  ++ +AE+YE E
Sbjct  60   LGSKDEAANAYVEAAKCYKKVDPEEAVRALEKAIEIYTEMGRFRRAAKHKKEIAELYEQE  119

Query  131  LGDMKKALEAYEKAAEWFDGDNAEALANKHYLKVADLAALEGDYYKAIENYERIGRSSIT  190
            LGD++KA+EAYE+AA+W++G+ A ALANK YLKVADL+A   DY KAIE YE++ ++S+ 
Sbjct  120  LGDLEKAIEAYEQAADWYEGEGASALANKCYLKVADLSAELEDYPKAIEIYEKVAKNSLE  179

Query  191  NNLMKWSVKDYFLKAGICHLASKDIVAANRALESYRDTDHTFASTREHQLLVDLVQAIEA  250
            NNL+K+SVK+YFLKAG+CHLA+ D+VAA RALE Y + D +FA TRE++LL DL++A+E 
Sbjct  180  NNLLKYSVKEYFLKAGLCHLAAGDLVAAQRALERYEELDPSFADTREYKLLNDLLEAVEE  239

Query  251  GDQEAFSDKLFQYDQLSKLDKWKTTLL  277
            GD EAF+D +F++DQ+SKLDKWKTT+L
Sbjct  240  GDVEAFTDAVFEFDQISKLDKWKTTIL  266



Lambda      K        H        a         alpha
   0.314    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00012462

Length=310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:405606 pfam14938, SNAP, Soluble NSF attachment protein, SNAP....  401     1e-142


>CDD:405606 pfam14938, SNAP, Soluble NSF attachment protein, SNAP.  The soluble 
NSF attachment protein (SNAP) proteins are involved in 
vesicular transport between the endoplasmic reticulum and 
Golgi apparatus. They act as adaptors between SNARE (integral 
membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive 
factor). They are structurally similar to TPR repeats.
Length=273

 Score = 401 bits (1033),  Expect = 1e-142, Method: Composition-based stats.
 Identities = 159/292 (54%), Positives = 212/292 (73%), Gaps = 19/292 (7%)

Query  11   KADKALQGASSGLSFFGGRTEKYENAADLYTQAANAFRVQKLNKEAGLAFEKAAAIQKQN  70
            KA+K L+ +S   SFFG ++ KYE AADLY QAANA+++ K  +EAG AFEKAA  Q + 
Sbjct  1    KAEKKLKSSSGFFSFFGSKSSKYEEAADLYIQAANAYKLAKNWEEAGEAFEKAAECQLK-  59

Query  71   LNEPDDAANTLQEAFKVYRKSDPEDAARVLSAAIQHYVLKGNLRRAATQQQHLAEVYEVE  130
            L   D+AAN   EA K Y+K DPE+A R L  AI+ Y   G  RRAA  ++ +AE+YE E
Sbjct  60   LGSKDEAANAYVEAAKCYKKVDPEEAVRALEKAIEIYTEMGRFRRAAKHKKEIAELYEQE  119

Query  131  LGDMKKALEAYEKAAEWFDGDNAEALANKHYLKVADLAALEGDYYKAIENYERIGRSSIT  190
            LGD++KA+EAYE+AA+W++G+ A ALANK YLKVADL+A   DY KAIE YE++ ++S+ 
Sbjct  120  LGDLEKAIEAYEQAADWYEGEGASALANKCYLKVADLSAELEDYPKAIEIYEKVAKNSLE  179

Query  191  NNLMKWSVKDYFLKAGICHLASKVCLDSTAPAFVLLLTVLQDIVAANRALESYRDTDHTF  250
            NNL+K+SVK+YFLKAG+CHLA+                   D+VAA RALE Y + D +F
Sbjct  180  NNLLKYSVKEYFLKAGLCHLAAG------------------DLVAAQRALERYEELDPSF  221

Query  251  ASTREHQLLVDLVQAIEAGDQEAFSDKLFQYDQLSKLDKWKTTLLLRIKSNI  302
            A TRE++LL DL++A+E GD EAF+D +F++DQ+SKLDKWKTT+LL+IK+ I
Sbjct  222  ADTREYKLLNDLLEAVEEGDVEAFTDAVFEFDQISKLDKWKTTILLKIKNTI  273



Lambda      K        H        a         alpha
   0.315    0.129    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 355153814


Query= TCONS_00012463

Length=159
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:405606 pfam14938, SNAP, Soluble NSF attachment protein, SNAP....  244     4e-83


>CDD:405606 pfam14938, SNAP, Soluble NSF attachment protein, SNAP.  The soluble 
NSF attachment protein (SNAP) proteins are involved in 
vesicular transport between the endoplasmic reticulum and 
Golgi apparatus. They act as adaptors between SNARE (integral 
membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive 
factor). They are structurally similar to TPR repeats.
Length=273

 Score = 244 bits (624),  Expect = 4e-83, Method: Composition-based stats.
 Identities = 94/151 (62%), Positives = 129/151 (85%), Gaps = 0/151 (0%)

Query  1    MKKALEAYEKAAEWFDGDNAEALANKHYLKVADLAALEGDYYKAIENYERIGRSSITNNL  60
            ++KA+EAYE+AA+W++G+ A ALANK YLKVADL+A   DY KAIE YE++ ++S+ NNL
Sbjct  123  LEKAIEAYEQAADWYEGEGASALANKCYLKVADLSAELEDYPKAIEIYEKVAKNSLENNL  182

Query  61   MKWSVKDYFLKAGICHLASKDIVAANRALESYRDTDHTFASTREHQLLVDLVQAIEAGDQ  120
            +K+SVK+YFLKAG+CHLA+ D+VAA RALE Y + D +FA TRE++LL DL++A+E GD 
Sbjct  183  LKYSVKEYFLKAGLCHLAAGDLVAAQRALERYEELDPSFADTREYKLLNDLLEAVEEGDV  242

Query  121  EAFSDKLFQYDQLSKLDKWKTTLLLRIKSNI  151
            EAF+D +F++DQ+SKLDKWKTT+LL+IK+ I
Sbjct  243  EAFTDAVFEFDQISKLDKWKTTILLKIKNTI  273



Lambda      K        H        a         alpha
   0.315    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00012464

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:405606 pfam14938, SNAP, Soluble NSF attachment protein, SNAP....  356     5e-126


>CDD:405606 pfam14938, SNAP, Soluble NSF attachment protein, SNAP.  The soluble 
NSF attachment protein (SNAP) proteins are involved in 
vesicular transport between the endoplasmic reticulum and 
Golgi apparatus. They act as adaptors between SNARE (integral 
membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive 
factor). They are structurally similar to TPR repeats.
Length=273

 Score = 356 bits (917),  Expect = 5e-126, Method: Composition-based stats.
 Identities = 141/248 (57%), Positives = 187/248 (75%), Gaps = 1/248 (0%)

Query  11   KADKALQGASSGLSFFGGRTEKYENAADLYTQAANAFRVQKLNKEAGLAFEKAAAIQKQN  70
            KA+K L+ +S   SFFG ++ KYE AADLY QAANA+++ K  +EAG AFEKAA  Q + 
Sbjct  1    KAEKKLKSSSGFFSFFGSKSSKYEEAADLYIQAANAYKLAKNWEEAGEAFEKAAECQLK-  59

Query  71   LNEPDDAANTLQEAFKVYRKSDPEDAARVLSAAIQHYVLKGNLRRAATQQQHLAEVYEVE  130
            L   D+AAN   EA K Y+K DPE+A R L  AI+ Y   G  RRAA  ++ +AE+YE E
Sbjct  60   LGSKDEAANAYVEAAKCYKKVDPEEAVRALEKAIEIYTEMGRFRRAAKHKKEIAELYEQE  119

Query  131  LGDMKKALEAYEKAAEWFDGDNAEALANKHYLKVADLAALEGDYYKAIENYERIGRSSIT  190
            LGD++KA+EAYE+AA+W++G+ A ALANK YLKVADL+A   DY KAIE YE++ ++S+ 
Sbjct  120  LGDLEKAIEAYEQAADWYEGEGASALANKCYLKVADLSAELEDYPKAIEIYEKVAKNSLE  179

Query  191  NNLMKWSVKDYFLKAGICHLASKVIVAANRALESYRDTDHTFASTREHQLLVDLVQAIEA  250
            NNL+K+SVK+YFLKAG+CHLA+  +VAA RALE Y + D +FA TRE++LL DL++A+E 
Sbjct  180  NNLLKYSVKEYFLKAGLCHLAAGDLVAAQRALERYEELDPSFADTREYKLLNDLLEAVEE  239

Query  251  GDQEAFSD  258
            GD EAF+D
Sbjct  240  GDVEAFTD  247



Lambda      K        H        a         alpha
   0.314    0.128    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00018341

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:405606 pfam14938, SNAP, Soluble NSF attachment protein, SNAP....  398     6e-142


>CDD:405606 pfam14938, SNAP, Soluble NSF attachment protein, SNAP.  The soluble 
NSF attachment protein (SNAP) proteins are involved in 
vesicular transport between the endoplasmic reticulum and 
Golgi apparatus. They act as adaptors between SNARE (integral 
membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive 
factor). They are structurally similar to TPR repeats.
Length=273

 Score = 398 bits (1026),  Expect = 6e-142, Method: Composition-based stats.
 Identities = 156/274 (57%), Positives = 208/274 (76%), Gaps = 1/274 (0%)

Query  11   KADKALQGASSGLSFFGGRTEKYENAADLYTQAANAFRVQKLSTRIWLAFEKAAAIQKQN  70
            KA+K L+ +S   SFFG ++ KYE AADLY QAANA+++ K       AFEKAA  Q + 
Sbjct  1    KAEKKLKSSSGFFSFFGSKSSKYEEAADLYIQAANAYKLAKNWEEAGEAFEKAAECQLK-  59

Query  71   LNEPDDAANTLQEAFKVYRKSDPEDAARVLSAAIQHYVLKGNLRRAATQQQHLAEVYEVE  130
            L   D+AAN   EA K Y+K DPE+A R L  AI+ Y   G  RRAA  ++ +AE+YE E
Sbjct  60   LGSKDEAANAYVEAAKCYKKVDPEEAVRALEKAIEIYTEMGRFRRAAKHKKEIAELYEQE  119

Query  131  LGDMKKALEAYEKAAEWFDGDNAEALANKHYLKVADLAALEGDYYKAIENYERIGRSSIT  190
            LGD++KA+EAYE+AA+W++G+ A ALANK YLKVADL+A   DY KAIE YE++ ++S+ 
Sbjct  120  LGDLEKAIEAYEQAADWYEGEGASALANKCYLKVADLSAELEDYPKAIEIYEKVAKNSLE  179

Query  191  NNLMKWSVKDYFLKAGICHLASKDIVAANRALESYRDTDHTFASTREHQLLVDLVQAIEA  250
            NNL+K+SVK+YFLKAG+CHLA+ D+VAA RALE Y + D +FA TRE++LL DL++A+E 
Sbjct  180  NNLLKYSVKEYFLKAGLCHLAAGDLVAAQRALERYEELDPSFADTREYKLLNDLLEAVEE  239

Query  251  GDQEAFSDKLFQYDQLSKLDKWKTTLLLRIKSNI  284
            GD EAF+D +F++DQ+SKLDKWKTT+LL+IK+ I
Sbjct  240  GDVEAFTDAVFEFDQISKLDKWKTTILLKIKNTI  273



Lambda      K        H        a         alpha
   0.315    0.128    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00012465

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:405606 pfam14938, SNAP, Soluble NSF attachment protein, SNAP....  308     2e-107


>CDD:405606 pfam14938, SNAP, Soluble NSF attachment protein, SNAP.  The soluble 
NSF attachment protein (SNAP) proteins are involved in 
vesicular transport between the endoplasmic reticulum and 
Golgi apparatus. They act as adaptors between SNARE (integral 
membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive 
factor). They are structurally similar to TPR repeats.
Length=273

 Score = 308 bits (792),  Expect = 2e-107, Method: Composition-based stats.
 Identities = 123/217 (57%), Positives = 161/217 (74%), Gaps = 1/217 (0%)

Query  11   KADKALQGASSGLSFFGGRTEKYENAADLYTQAANAFRVQKLNKEAGLAFEKAAAIQKQN  70
            KA+K L+ +S   SFFG ++ KYE AADLY QAANA+++ K  +EAG AFEKAA  Q + 
Sbjct  1    KAEKKLKSSSGFFSFFGSKSSKYEEAADLYIQAANAYKLAKNWEEAGEAFEKAAECQLK-  59

Query  71   LNEPDDAANTLQEAFKVYRKSDPEDAARVLSAAIQHYVLKGNLRRAATQQQHLAEVYEVE  130
            L   D+AAN   EA K Y+K DPE+A R L  AI+ Y   G  RRAA  ++ +AE+YE E
Sbjct  60   LGSKDEAANAYVEAAKCYKKVDPEEAVRALEKAIEIYTEMGRFRRAAKHKKEIAELYEQE  119

Query  131  LGDMKKALEAYEKAAEWFDGDNAEALANKHYLKVADLAALEGDYYKAIENYERIGRSSIT  190
            LGD++KA+EAYE+AA+W++G+ A ALANK YLKVADL+A   DY KAIE YE++ ++S+ 
Sbjct  120  LGDLEKAIEAYEQAADWYEGEGASALANKCYLKVADLSAELEDYPKAIEIYEKVAKNSLE  179

Query  191  NNLMKWSVKDYFLKAGICHLASKVFVAANRALESYRD  227
            NNL+K+SVK+YFLKAG+CHLA+   VAA RALE Y +
Sbjct  180  NNLLKYSVKEYFLKAGLCHLAAGDLVAAQRALERYEE  216



Lambda      K        H        a         alpha
   0.314    0.128    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00012466

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461497 pfam04950, RIBIOP_C, 40S ribosome biogenesis protein T...  470     9e-166
CDD:462369 pfam08142, AARP2CN, AARP2CN (NUC121) domain. This doma...  79.9    5e-19 


>CDD:461497 pfam04950, RIBIOP_C, 40S ribosome biogenesis protein Tsr1 and 
BMS1 C-terminal.  RIBIOP_C is a family of eukaryotic proteins 
from the C-terminus of pre-rRNA-processing protein or ribosome 
biogenesis proteins BMS1 and TSR1. These proteins act, 
in the nucleolus, as a molecular switch during maturation of 
the 40S ribosomal subunit. This domain, domain IV of translation 
elongation factor selb, adopts the same fold as translation 
proteins such as domain II of GTP-elongation factor Tu 
proteins.
Length=284

 Score = 470 bits (1211),  Expect = 9e-166, Method: Composition-based stats.
 Identities = 154/307 (50%), Positives = 198/307 (64%), Gaps = 24/307 (8%)

Query  233  IELHPNVLARERLARFRGLKNFKTSHWETAEDRPHEPEDWRRLLQIVDYKGSKNKTLREA  292
            IE  P+V ARER A++RGLK+F+TS W+  E+    P+D+ R+ Q  +YK +K + L+EA
Sbjct  1    IETPPDVPARERFAKYRGLKSFRTSPWDPKEN---LPDDYARIFQFENYKRTKKRVLKEA  57

Query  293  LVGG-VKPGIRVDVHLRGVPSSLRNRRQPLSLFSLLRHEHKHTVVNVNMHLNSSVEEPLK  351
            L G  V+PG  V ++++ VP        PL +  LL HEHK +VVN  +  +   E+PLK
Sbjct  58   LNGAEVRPGTYVRIYIKNVPCEFVENF-PLIVGGLLPHEHKMSVVNFRIKRHRWYEKPLK  116

Query  352  SKEELIVQCGPRRLIVKPIFSAGDNTPNNVHKFDRFLHPGRSAIATWIGPLTWGAVPVLV  411
            SK+ LI Q G RR  + PIFS  DN  NN HK++R+LHPG   +AT+ GP+T+   PVL 
Sbjct  117  SKDPLIFQVGWRRFQINPIFSQADN--NNRHKYERYLHPGHMCVATFYGPITFPNTPVLA  174

Query  412  FKSKQNHDPEVLDSADADAEGQIDIDNLELIGKGTVVAPDQSRIVAKRAILTGHPFKIHK  471
            FK   +                       L+  GTV+  D SRI+ KR ILTGHPFKIHK
Sbjct  175  FKELSSSTG-----------------GFRLVATGTVLNVDPSRIIVKRIILTGHPFKIHK  217

Query  472  RVVTVRYMFFNAEDVNWFKALQLWTKRGRSGYIKESLGTHGYFKATFDGKINPQDSIGIS  531
            +  TVRYMFFN EDV WFK ++L TK GR G+IKESLGTHGYFKATFDGKI  QD++ +S
Sbjct  218  KTATVRYMFFNPEDVAWFKPVELRTKSGRRGHIKESLGTHGYFKATFDGKILQQDTVFMS  277

Query  532  LYKRVFP  538
            LYKRVFP
Sbjct  278  LYKRVFP  284


>CDD:462369 pfam08142, AARP2CN, AARP2CN (NUC121) domain.  This domain is 
the central domain of AARP2. It is weakly similar to the GTP-binding 
domain of elongation factor TU.
Length=86

 Score = 79.9 bits (198),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 6/61 (10%)

Query  1   MLVEEVKWPEATTEVVDD------VVLTGIVRGKGLKADRLVHIPGWGDFQIDSITAAPL  54
           +L + V+      ++ ++      +V+ G VRG  LK ++LVHIPG GDFQI  I A P 
Sbjct  26  LLADRVEDITDPEDIRENPKCDGTLVVYGYVRGTPLKVNQLVHIPGLGDFQISKIEALPD  85

Query  55  P  55
           P
Sbjct  86  P  86



Lambda      K        H        a         alpha
   0.315    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00012468

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462375 pfam08149, BING4CT, BING4CT (NUC141) domain. This C te...  163     9e-50


>CDD:462375 pfam08149, BING4CT, BING4CT (NUC141) domain.  This C terminal 
domain is found in the BING4 family of nucleolar WD40 repeat 
proteins.
Length=79

 Score = 163 bits (416),  Expect = 9e-50, Method: Composition-based stats.
 Identities = 51/79 (65%), Positives = 62/79 (78%), Gaps = 0/79 (0%)

Query  360  PYMAWGGDGQRIENLRWCPYEDVLGVAHDKGFASILVPGAGEPNFDALEVNPYENTKQRQ  419
            PY+     G  I +LR+CP+EDVLGV H KGF+SI+VPG+GEPNFDALE NPYE  KQR+
Sbjct  1    PYLTHLLPGSTITSLRFCPFEDVLGVGHSKGFSSIIVPGSGEPNFDALEANPYETKKQRR  60

Query  420  AAEVRALLNKLQPEMISLD  438
              EVR+LL K+ PEMI+LD
Sbjct  61   EREVRSLLEKIPPEMITLD  79



Lambda      K        H        a         alpha
   0.317    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00012467

Length=222


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00018342

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426444 pfam01803, LIM_bind, LIM-domain binding protein. The L...  108     3e-29


>CDD:426444 pfam01803, LIM_bind, LIM-domain binding protein.  The LIM-domain 
binding protein, binds to the LIM domain pfam00412 of LIM 
homeodomain proteins which are transcriptional regulators 
of development. Nuclear LIM interactor (NLI) / LIM domain-binding 
protein 1 (LDB1) is located in the nuclei of neuronal 
cells during development, it is co-expressed with Isl1 in early 
motor neuron differentiation and has a suggested role in 
the Isl1 dependent development of motor neurons. It is suggested 
that these proteins act synergistically to enhance transcriptional 
efficiency by acting as co-factors for LIM homeodomain 
and Otx class transcription factors both of which have 
essential roles in development. The Drosophila protein Chip 
is required for segmentation and activity of a remote wing 
margin enhancer. Chip is a ubiquitous chromosomal factor required 
for normal expression of diverse genes at many stages 
of development. It is suggested that Chip cooperates with 
different LIM domain proteins and other factors to structurally 
support remote enhancer-promoter interactions.
Length=242

 Score = 108 bits (271),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 42/114 (37%), Positives = 61/114 (54%), Gaps = 15/114 (13%)

Query  1    MLDIVVMNHTEYLPRSQLQPL-----ELSEQKQSPKVSKNLGKRAQQKQAQQAAP-----  50
             L+    +H EY+PR+ L+ L     E ++  QSPK+SK + ++ Q  QA  +       
Sbjct  129  WLEFCTRSHEEYIPRNSLEKLLKQLHEWADLSQSPKMSKKVLQKQQIFQALSSKSPAPEP  188

Query  51   -----SLPESMVTANGVPTAVMSFLEVAETISHMQMLFQFSQQNPQFSPPEALR  99
                  LP S V   G+P AVM FL++ E +S M+ L +FS+QN   SP EAL 
Sbjct  189  PEAIKELPSSFVNDFGIPEAVMRFLQIGEVMSSMKDLMEFSKQNNILSPLEALE  242



Lambda      K        H        a         alpha
   0.309    0.123    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00012469

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426444 pfam01803, LIM_bind, LIM-domain binding protein. The L...  108     3e-29


>CDD:426444 pfam01803, LIM_bind, LIM-domain binding protein.  The LIM-domain 
binding protein, binds to the LIM domain pfam00412 of LIM 
homeodomain proteins which are transcriptional regulators 
of development. Nuclear LIM interactor (NLI) / LIM domain-binding 
protein 1 (LDB1) is located in the nuclei of neuronal 
cells during development, it is co-expressed with Isl1 in early 
motor neuron differentiation and has a suggested role in 
the Isl1 dependent development of motor neurons. It is suggested 
that these proteins act synergistically to enhance transcriptional 
efficiency by acting as co-factors for LIM homeodomain 
and Otx class transcription factors both of which have 
essential roles in development. The Drosophila protein Chip 
is required for segmentation and activity of a remote wing 
margin enhancer. Chip is a ubiquitous chromosomal factor required 
for normal expression of diverse genes at many stages 
of development. It is suggested that Chip cooperates with 
different LIM domain proteins and other factors to structurally 
support remote enhancer-promoter interactions.
Length=242

 Score = 108 bits (271),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 42/114 (37%), Positives = 61/114 (54%), Gaps = 15/114 (13%)

Query  1    MLDIVVMNHTEYLPRSQLQPL-----ELSEQKQSPKVSKNLGKRAQQKQAQQAAP-----  50
             L+    +H EY+PR+ L+ L     E ++  QSPK+SK + ++ Q  QA  +       
Sbjct  129  WLEFCTRSHEEYIPRNSLEKLLKQLHEWADLSQSPKMSKKVLQKQQIFQALSSKSPAPEP  188

Query  51   -----SLPESMVTANGVPTAVMSFLEVAETISHMQMLFQFSQQNPQFSPPEALR  99
                  LP S V   G+P AVM FL++ E +S M+ L +FS+QN   SP EAL 
Sbjct  189  PEAIKELPSSFVNDFGIPEAVMRFLQIGEVMSSMKDLMEFSKQNNILSPLEALE  242



Lambda      K        H        a         alpha
   0.309    0.123    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00012470

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426444 pfam01803, LIM_bind, LIM-domain binding protein. The L...  108     3e-29


>CDD:426444 pfam01803, LIM_bind, LIM-domain binding protein.  The LIM-domain 
binding protein, binds to the LIM domain pfam00412 of LIM 
homeodomain proteins which are transcriptional regulators 
of development. Nuclear LIM interactor (NLI) / LIM domain-binding 
protein 1 (LDB1) is located in the nuclei of neuronal 
cells during development, it is co-expressed with Isl1 in early 
motor neuron differentiation and has a suggested role in 
the Isl1 dependent development of motor neurons. It is suggested 
that these proteins act synergistically to enhance transcriptional 
efficiency by acting as co-factors for LIM homeodomain 
and Otx class transcription factors both of which have 
essential roles in development. The Drosophila protein Chip 
is required for segmentation and activity of a remote wing 
margin enhancer. Chip is a ubiquitous chromosomal factor required 
for normal expression of diverse genes at many stages 
of development. It is suggested that Chip cooperates with 
different LIM domain proteins and other factors to structurally 
support remote enhancer-promoter interactions.
Length=242

 Score = 108 bits (271),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 42/114 (37%), Positives = 61/114 (54%), Gaps = 15/114 (13%)

Query  1    MLDIVVMNHTEYLPRSQLQPL-----ELSEQKQSPKVSKNLGKRAQQKQAQQAAP-----  50
             L+    +H EY+PR+ L+ L     E ++  QSPK+SK + ++ Q  QA  +       
Sbjct  129  WLEFCTRSHEEYIPRNSLEKLLKQLHEWADLSQSPKMSKKVLQKQQIFQALSSKSPAPEP  188

Query  51   -----SLPESMVTANGVPTAVMSFLEVAETISHMQMLFQFSQQNPQFSPPEALR  99
                  LP S V   G+P AVM FL++ E +S M+ L +FS+QN   SP EAL 
Sbjct  189  PEAIKELPSSFVNDFGIPEAVMRFLQIGEVMSSMKDLMEFSKQNNILSPLEALE  242



Lambda      K        H        a         alpha
   0.309    0.123    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00012471

Length=956
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  155     1e-44


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 155 bits (394),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 65/119 (55%), Positives = 82/119 (69%), Gaps = 3/119 (3%)

Query  687  LLLYGPPGTGKTLLAKAVARESGATVLEVSGSEVYDMYVGEGEKNVKAIFTLAKKLSPCV  746
            LLLYGPPGTGKT LAKAVA+E GA  +E+SGSE+   YVGE EK ++ +F  AKKL+PCV
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  747  VFIDEADAIFCSRTGTSSRTSHRELINQFLREWDGMNDMSAFIMV--ATNRPFDLDDAV  803
            +FIDE DA+  SR       S R ++NQ L E DG    ++ ++V  ATNRP  LD A+
Sbjct  61   IFIDEIDALAGSRGSGGDSES-RRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPAL  118



Lambda      K        H        a         alpha
   0.315    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1217653360


Query= TCONS_00012472

Length=2275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:370511 pfam09462, Mus7, Mus7/MMS22 family. This family includ...  836     0.0  


>CDD:370511 pfam09462, Mus7, Mus7/MMS22 family.  This family includes a conserved 
region from the Mus7 protein. Mus7 is involved in the 
repair of replication-associated DNA damage in the fission 
yeast Schizosaccharomyces pombe. Mus7 functions in the same 
pathway as Mus81, a subunit of the Mus81-Eme1 structure-specific 
endonuclease, which has been implicated in the repair 
of the replication-associated DNA damage. The MMS22 proteins 
are involved in repairing double-stranded DNA breaks created 
by the cleavage reaction of topoisomerase II.
Length=610

 Score = 836 bits (2161),  Expect = 0.0, Method: Composition-based stats.
 Identities = 347/639 (54%), Positives = 429/639 (67%), Gaps = 30/639 (5%)

Query  1301  FENGWLSLFISLPLNEFDSCGLVRIGARFQEAHDNWLMVKRLLSPVLDNYDTNAETQPIS  1360
              E+ W  LF  LPL E D+ G+   G+RF    +NW +VKRLLSPV ++YD+N E    S
Sbjct  1     SESLWQRLFTLLPLPEIDAIGITTFGSRFPTPKENWSLVKRLLSPVFEDYDSNKEQP--S  58

Query  1361  CNNYCRALFRRCYHLINGWGWRDCRPIMQLLYDFFAKRHLYDLKLEESFKSPSFLDELDR  1420
              N YCRALF RCY L + WGWRDC  ++  LYDFF  R   DL+ EES+KSP FLDELDR
Sbjct  59    YNRYCRALFGRCYFLNSRWGWRDCETLLLQLYDFFKSRKFADLEEEESYKSPPFLDELDR  118

Query  1421  NPSFDVQPGDPSFHIFLKILATGLRFLPLFCDKKQIRNFAWRLLPNHDGRYPKEKPISQS  1480
              PS D++PGD  FHIFLK+LA  + FL     KK+I+N   RL PNH  +Y KE PISQS
Sbjct  119   RPSLDIEPGDTCFHIFLKLLALAISFLR--ESKKKIKNLVERLTPNHKRQYTKEDPISQS  176

Query  1481  DLDAVRNHHDLLCTLFFAVPDGCRPRLEIIKTLVDPAISHRETCNISIRAWSRLVRFKLS  1540
             DL A+RN H+LLCTL +A PD  RPRLE I  LV+PA SH+E C ISIRAW +L RF +S
Sbjct  177   DLAALRNRHNLLCTLAWASPDSLRPRLEEILDLVEPADSHKEACLISIRAWGQLARFVIS  236

Query  1541  TDEDLSGLEPFADWLCYFLGEFLRQHSIARKEIEAQNIIER-FSQEEVEKTISQNQRQIE  1599
             T +D+S LEPF DWL   + EFL Q+ +AR EIEAQN + + F     +  + QN+R IE
Sbjct  237   TQKDVSILEPFVDWLNNVVSEFLDQYVLARSEIEAQNEMWKSFLHNLADILVEQNKRTIE  296

Query  1600  SLLTIALGGLQSAVRASPTLEHARVVLCKAPIRAILGLFNPRVARLNTVVSEALQVIIAY  1659
             SLL  AL  LQ  ++ SPTLEHA V+L KAP++AIL LF+ RV R+N    EAL  I ++
Sbjct  297   SLLHTALRSLQDVIQISPTLEHANVLLSKAPLKAILSLFDSRVPRVN---QEALDTIQSF  353

Query  1660  LQKCNENPVAAAKTTAVPVDEDSQEYGDWTDIEAIYGGESPPVSRGVEHVESIFLPAVSR  1719
             L      P   ++  +   D+DSQ+YGD  DIE +Y  E        E + S+  PA+S+
Sbjct  354   L------PAVTSEEQSSSEDDDSQDYGDLDDIELLYEEELTK--EFFELLRSLLHPALSQ  405

Query  1720  LVSNCFGEDYCPEDATLLKVVDCWTSIASVLVKHGLKHWDNYLGHYDGESWSSLRSTVQT  1779
             L+SNCFGED CPEDA LL V+DCWTSIASVLVK+ L+ W +Y   +  ESW  LR+T Q 
Sbjct  406   LLSNCFGEDRCPEDAVLLPVLDCWTSIASVLVKNNLRWWSSYYSGFGLESWIYLRNTTQR  465

Query  1780  RKFTPLFLASCIEKDPECLSECRHLILSMWLSSLVERVSMLKFQHRLTEALLNLDTMNPL  1839
             RKFTPLFLAS +EKD    SEC+ L+L +WLSSLV+RVS LKFQH LTE LLNL   +P+
Sbjct  466   RKFTPLFLASLLEKDASFFSECKELVLGLWLSSLVKRVSSLKFQHSLTELLLNLLQRDPI  525

Query  1840  LHNLPFSKDRQNDRYSISLDDLGQRRLSLLSSLLSNMRAHVQGLEDTESRELSSTRRDYR  1899
             L NLPF   +    YSI+L     RRLSLLS+LLSNMR          SR LS ++ +Y 
Sbjct  526   LQNLPFLAKKT---YSITLTTGENRRLSLLSNLLSNMR----------SRSLSLSKAEYT  572

Query  1900  ELIQRMMASMKANYQELGSGGASAQGAYVDFVHRIVGFL  1938
             ELIQ ++ SMK  YQ+LGS   SA GAYVDFVHR+VGF+
Sbjct  573   ELIQELLRSMKDVYQKLGSSS-SAHGAYVDFVHRVVGFI  610



Lambda      K        H        a         alpha
   0.317    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2820658304


Query= TCONS_00012473

Length=2275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:370511 pfam09462, Mus7, Mus7/MMS22 family. This family includ...  836     0.0  


>CDD:370511 pfam09462, Mus7, Mus7/MMS22 family.  This family includes a conserved 
region from the Mus7 protein. Mus7 is involved in the 
repair of replication-associated DNA damage in the fission 
yeast Schizosaccharomyces pombe. Mus7 functions in the same 
pathway as Mus81, a subunit of the Mus81-Eme1 structure-specific 
endonuclease, which has been implicated in the repair 
of the replication-associated DNA damage. The MMS22 proteins 
are involved in repairing double-stranded DNA breaks created 
by the cleavage reaction of topoisomerase II.
Length=610

 Score = 836 bits (2161),  Expect = 0.0, Method: Composition-based stats.
 Identities = 347/639 (54%), Positives = 429/639 (67%), Gaps = 30/639 (5%)

Query  1301  FENGWLSLFISLPLNEFDSCGLVRIGARFQEAHDNWLMVKRLLSPVLDNYDTNAETQPIS  1360
              E+ W  LF  LPL E D+ G+   G+RF    +NW +VKRLLSPV ++YD+N E    S
Sbjct  1     SESLWQRLFTLLPLPEIDAIGITTFGSRFPTPKENWSLVKRLLSPVFEDYDSNKEQP--S  58

Query  1361  CNNYCRALFRRCYHLINGWGWRDCRPIMQLLYDFFAKRHLYDLKLEESFKSPSFLDELDR  1420
              N YCRALF RCY L + WGWRDC  ++  LYDFF  R   DL+ EES+KSP FLDELDR
Sbjct  59    YNRYCRALFGRCYFLNSRWGWRDCETLLLQLYDFFKSRKFADLEEEESYKSPPFLDELDR  118

Query  1421  NPSFDVQPGDPSFHIFLKILATGLRFLPLFCDKKQIRNFAWRLLPNHDGRYPKEKPISQS  1480
              PS D++PGD  FHIFLK+LA  + FL     KK+I+N   RL PNH  +Y KE PISQS
Sbjct  119   RPSLDIEPGDTCFHIFLKLLALAISFLR--ESKKKIKNLVERLTPNHKRQYTKEDPISQS  176

Query  1481  DLDAVRNHHDLLCTLFFAVPDGCRPRLEIIKTLVDPAISHRETCNISIRAWSRLVRFKLS  1540
             DL A+RN H+LLCTL +A PD  RPRLE I  LV+PA SH+E C ISIRAW +L RF +S
Sbjct  177   DLAALRNRHNLLCTLAWASPDSLRPRLEEILDLVEPADSHKEACLISIRAWGQLARFVIS  236

Query  1541  TDEDLSGLEPFADWLCYFLGEFLRQHSIARKEIEAQNIIER-FSQEEVEKTISQNQRQIE  1599
             T +D+S LEPF DWL   + EFL Q+ +AR EIEAQN + + F     +  + QN+R IE
Sbjct  237   TQKDVSILEPFVDWLNNVVSEFLDQYVLARSEIEAQNEMWKSFLHNLADILVEQNKRTIE  296

Query  1600  SLLTIALGGLQSAVRASPTLEHARVVLCKAPIRAILGLFNPRVARLNTVVSEALQVIIAY  1659
             SLL  AL  LQ  ++ SPTLEHA V+L KAP++AIL LF+ RV R+N    EAL  I ++
Sbjct  297   SLLHTALRSLQDVIQISPTLEHANVLLSKAPLKAILSLFDSRVPRVN---QEALDTIQSF  353

Query  1660  LQKCNENPVAAAKTTAVPVDEDSQEYGDWTDIEAIYGGESPPVSRGVEHVESIFLPAVSR  1719
             L      P   ++  +   D+DSQ+YGD  DIE +Y  E        E + S+  PA+S+
Sbjct  354   L------PAVTSEEQSSSEDDDSQDYGDLDDIELLYEEELTK--EFFELLRSLLHPALSQ  405

Query  1720  LVSNCFGEDYCPEDATLLKVVDCWTSIASVLVKHGLKHWDNYLGHYDGESWSSLRSTVQT  1779
             L+SNCFGED CPEDA LL V+DCWTSIASVLVK+ L+ W +Y   +  ESW  LR+T Q 
Sbjct  406   LLSNCFGEDRCPEDAVLLPVLDCWTSIASVLVKNNLRWWSSYYSGFGLESWIYLRNTTQR  465

Query  1780  RKFTPLFLASCIEKDPECLSECRHLILSMWLSSLVERVSMLKFQHRLTEALLNLDTMNPL  1839
             RKFTPLFLAS +EKD    SEC+ L+L +WLSSLV+RVS LKFQH LTE LLNL   +P+
Sbjct  466   RKFTPLFLASLLEKDASFFSECKELVLGLWLSSLVKRVSSLKFQHSLTELLLNLLQRDPI  525

Query  1840  LHNLPFSKDRQNDRYSISLDDLGQRRLSLLSSLLSNMRAHVQGLEDTESRELSSTRRDYR  1899
             L NLPF   +    YSI+L     RRLSLLS+LLSNMR          SR LS ++ +Y 
Sbjct  526   LQNLPFLAKKT---YSITLTTGENRRLSLLSNLLSNMR----------SRSLSLSKAEYT  572

Query  1900  ELIQRMMASMKANYQELGSGGASAQGAYVDFVHRIVGFL  1938
             ELIQ ++ SMK  YQ+LGS   SA GAYVDFVHR+VGF+
Sbjct  573   ELIQELLRSMKDVYQKLGSSS-SAHGAYVDFVHRVVGFI  610



Lambda      K        H        a         alpha
   0.317    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2820658304


Query= TCONS_00012474

Length=2275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:370511 pfam09462, Mus7, Mus7/MMS22 family. This family includ...  836     0.0  


>CDD:370511 pfam09462, Mus7, Mus7/MMS22 family.  This family includes a conserved 
region from the Mus7 protein. Mus7 is involved in the 
repair of replication-associated DNA damage in the fission 
yeast Schizosaccharomyces pombe. Mus7 functions in the same 
pathway as Mus81, a subunit of the Mus81-Eme1 structure-specific 
endonuclease, which has been implicated in the repair 
of the replication-associated DNA damage. The MMS22 proteins 
are involved in repairing double-stranded DNA breaks created 
by the cleavage reaction of topoisomerase II.
Length=610

 Score = 836 bits (2161),  Expect = 0.0, Method: Composition-based stats.
 Identities = 347/639 (54%), Positives = 429/639 (67%), Gaps = 30/639 (5%)

Query  1301  FENGWLSLFISLPLNEFDSCGLVRIGARFQEAHDNWLMVKRLLSPVLDNYDTNAETQPIS  1360
              E+ W  LF  LPL E D+ G+   G+RF    +NW +VKRLLSPV ++YD+N E    S
Sbjct  1     SESLWQRLFTLLPLPEIDAIGITTFGSRFPTPKENWSLVKRLLSPVFEDYDSNKEQP--S  58

Query  1361  CNNYCRALFRRCYHLINGWGWRDCRPIMQLLYDFFAKRHLYDLKLEESFKSPSFLDELDR  1420
              N YCRALF RCY L + WGWRDC  ++  LYDFF  R   DL+ EES+KSP FLDELDR
Sbjct  59    YNRYCRALFGRCYFLNSRWGWRDCETLLLQLYDFFKSRKFADLEEEESYKSPPFLDELDR  118

Query  1421  NPSFDVQPGDPSFHIFLKILATGLRFLPLFCDKKQIRNFAWRLLPNHDGRYPKEKPISQS  1480
              PS D++PGD  FHIFLK+LA  + FL     KK+I+N   RL PNH  +Y KE PISQS
Sbjct  119   RPSLDIEPGDTCFHIFLKLLALAISFLR--ESKKKIKNLVERLTPNHKRQYTKEDPISQS  176

Query  1481  DLDAVRNHHDLLCTLFFAVPDGCRPRLEIIKTLVDPAISHRETCNISIRAWSRLVRFKLS  1540
             DL A+RN H+LLCTL +A PD  RPRLE I  LV+PA SH+E C ISIRAW +L RF +S
Sbjct  177   DLAALRNRHNLLCTLAWASPDSLRPRLEEILDLVEPADSHKEACLISIRAWGQLARFVIS  236

Query  1541  TDEDLSGLEPFADWLCYFLGEFLRQHSIARKEIEAQNIIER-FSQEEVEKTISQNQRQIE  1599
             T +D+S LEPF DWL   + EFL Q+ +AR EIEAQN + + F     +  + QN+R IE
Sbjct  237   TQKDVSILEPFVDWLNNVVSEFLDQYVLARSEIEAQNEMWKSFLHNLADILVEQNKRTIE  296

Query  1600  SLLTIALGGLQSAVRASPTLEHARVVLCKAPIRAILGLFNPRVARLNTVVSEALQVIIAY  1659
             SLL  AL  LQ  ++ SPTLEHA V+L KAP++AIL LF+ RV R+N    EAL  I ++
Sbjct  297   SLLHTALRSLQDVIQISPTLEHANVLLSKAPLKAILSLFDSRVPRVN---QEALDTIQSF  353

Query  1660  LQKCNENPVAAAKTTAVPVDEDSQEYGDWTDIEAIYGGESPPVSRGVEHVESIFLPAVSR  1719
             L      P   ++  +   D+DSQ+YGD  DIE +Y  E        E + S+  PA+S+
Sbjct  354   L------PAVTSEEQSSSEDDDSQDYGDLDDIELLYEEELTK--EFFELLRSLLHPALSQ  405

Query  1720  LVSNCFGEDYCPEDATLLKVVDCWTSIASVLVKHGLKHWDNYLGHYDGESWSSLRSTVQT  1779
             L+SNCFGED CPEDA LL V+DCWTSIASVLVK+ L+ W +Y   +  ESW  LR+T Q 
Sbjct  406   LLSNCFGEDRCPEDAVLLPVLDCWTSIASVLVKNNLRWWSSYYSGFGLESWIYLRNTTQR  465

Query  1780  RKFTPLFLASCIEKDPECLSECRHLILSMWLSSLVERVSMLKFQHRLTEALLNLDTMNPL  1839
             RKFTPLFLAS +EKD    SEC+ L+L +WLSSLV+RVS LKFQH LTE LLNL   +P+
Sbjct  466   RKFTPLFLASLLEKDASFFSECKELVLGLWLSSLVKRVSSLKFQHSLTELLLNLLQRDPI  525

Query  1840  LHNLPFSKDRQNDRYSISLDDLGQRRLSLLSSLLSNMRAHVQGLEDTESRELSSTRRDYR  1899
             L NLPF   +    YSI+L     RRLSLLS+LLSNMR          SR LS ++ +Y 
Sbjct  526   LQNLPFLAKKT---YSITLTTGENRRLSLLSNLLSNMR----------SRSLSLSKAEYT  572

Query  1900  ELIQRMMASMKANYQELGSGGASAQGAYVDFVHRIVGFL  1938
             ELIQ ++ SMK  YQ+LGS   SA GAYVDFVHR+VGF+
Sbjct  573   ELIQELLRSMKDVYQKLGSSS-SAHGAYVDFVHRVVGFI  610



Lambda      K        H        a         alpha
   0.317    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2820658304


Query= TCONS_00018344

Length=2275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:370511 pfam09462, Mus7, Mus7/MMS22 family. This family includ...  836     0.0  


>CDD:370511 pfam09462, Mus7, Mus7/MMS22 family.  This family includes a conserved 
region from the Mus7 protein. Mus7 is involved in the 
repair of replication-associated DNA damage in the fission 
yeast Schizosaccharomyces pombe. Mus7 functions in the same 
pathway as Mus81, a subunit of the Mus81-Eme1 structure-specific 
endonuclease, which has been implicated in the repair 
of the replication-associated DNA damage. The MMS22 proteins 
are involved in repairing double-stranded DNA breaks created 
by the cleavage reaction of topoisomerase II.
Length=610

 Score = 836 bits (2161),  Expect = 0.0, Method: Composition-based stats.
 Identities = 347/639 (54%), Positives = 429/639 (67%), Gaps = 30/639 (5%)

Query  1301  FENGWLSLFISLPLNEFDSCGLVRIGARFQEAHDNWLMVKRLLSPVLDNYDTNAETQPIS  1360
              E+ W  LF  LPL E D+ G+   G+RF    +NW +VKRLLSPV ++YD+N E    S
Sbjct  1     SESLWQRLFTLLPLPEIDAIGITTFGSRFPTPKENWSLVKRLLSPVFEDYDSNKEQP--S  58

Query  1361  CNNYCRALFRRCYHLINGWGWRDCRPIMQLLYDFFAKRHLYDLKLEESFKSPSFLDELDR  1420
              N YCRALF RCY L + WGWRDC  ++  LYDFF  R   DL+ EES+KSP FLDELDR
Sbjct  59    YNRYCRALFGRCYFLNSRWGWRDCETLLLQLYDFFKSRKFADLEEEESYKSPPFLDELDR  118

Query  1421  NPSFDVQPGDPSFHIFLKILATGLRFLPLFCDKKQIRNFAWRLLPNHDGRYPKEKPISQS  1480
              PS D++PGD  FHIFLK+LA  + FL     KK+I+N   RL PNH  +Y KE PISQS
Sbjct  119   RPSLDIEPGDTCFHIFLKLLALAISFLR--ESKKKIKNLVERLTPNHKRQYTKEDPISQS  176

Query  1481  DLDAVRNHHDLLCTLFFAVPDGCRPRLEIIKTLVDPAISHRETCNISIRAWSRLVRFKLS  1540
             DL A+RN H+LLCTL +A PD  RPRLE I  LV+PA SH+E C ISIRAW +L RF +S
Sbjct  177   DLAALRNRHNLLCTLAWASPDSLRPRLEEILDLVEPADSHKEACLISIRAWGQLARFVIS  236

Query  1541  TDEDLSGLEPFADWLCYFLGEFLRQHSIARKEIEAQNIIER-FSQEEVEKTISQNQRQIE  1599
             T +D+S LEPF DWL   + EFL Q+ +AR EIEAQN + + F     +  + QN+R IE
Sbjct  237   TQKDVSILEPFVDWLNNVVSEFLDQYVLARSEIEAQNEMWKSFLHNLADILVEQNKRTIE  296

Query  1600  SLLTIALGGLQSAVRASPTLEHARVVLCKAPIRAILGLFNPRVARLNTVVSEALQVIIAY  1659
             SLL  AL  LQ  ++ SPTLEHA V+L KAP++AIL LF+ RV R+N    EAL  I ++
Sbjct  297   SLLHTALRSLQDVIQISPTLEHANVLLSKAPLKAILSLFDSRVPRVN---QEALDTIQSF  353

Query  1660  LQKCNENPVAAAKTTAVPVDEDSQEYGDWTDIEAIYGGESPPVSRGVEHVESIFLPAVSR  1719
             L      P   ++  +   D+DSQ+YGD  DIE +Y  E        E + S+  PA+S+
Sbjct  354   L------PAVTSEEQSSSEDDDSQDYGDLDDIELLYEEELTK--EFFELLRSLLHPALSQ  405

Query  1720  LVSNCFGEDYCPEDATLLKVVDCWTSIASVLVKHGLKHWDNYLGHYDGESWSSLRSTVQT  1779
             L+SNCFGED CPEDA LL V+DCWTSIASVLVK+ L+ W +Y   +  ESW  LR+T Q 
Sbjct  406   LLSNCFGEDRCPEDAVLLPVLDCWTSIASVLVKNNLRWWSSYYSGFGLESWIYLRNTTQR  465

Query  1780  RKFTPLFLASCIEKDPECLSECRHLILSMWLSSLVERVSMLKFQHRLTEALLNLDTMNPL  1839
             RKFTPLFLAS +EKD    SEC+ L+L +WLSSLV+RVS LKFQH LTE LLNL   +P+
Sbjct  466   RKFTPLFLASLLEKDASFFSECKELVLGLWLSSLVKRVSSLKFQHSLTELLLNLLQRDPI  525

Query  1840  LHNLPFSKDRQNDRYSISLDDLGQRRLSLLSSLLSNMRAHVQGLEDTESRELSSTRRDYR  1899
             L NLPF   +    YSI+L     RRLSLLS+LLSNMR          SR LS ++ +Y 
Sbjct  526   LQNLPFLAKKT---YSITLTTGENRRLSLLSNLLSNMR----------SRSLSLSKAEYT  572

Query  1900  ELIQRMMASMKANYQELGSGGASAQGAYVDFVHRIVGFL  1938
             ELIQ ++ SMK  YQ+LGS   SA GAYVDFVHR+VGF+
Sbjct  573   ELIQELLRSMKDVYQKLGSSS-SAHGAYVDFVHRVVGFI  610



Lambda      K        H        a         alpha
   0.317    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2820658304


Query= TCONS_00018345

Length=2275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:370511 pfam09462, Mus7, Mus7/MMS22 family. This family includ...  836     0.0  


>CDD:370511 pfam09462, Mus7, Mus7/MMS22 family.  This family includes a conserved 
region from the Mus7 protein. Mus7 is involved in the 
repair of replication-associated DNA damage in the fission 
yeast Schizosaccharomyces pombe. Mus7 functions in the same 
pathway as Mus81, a subunit of the Mus81-Eme1 structure-specific 
endonuclease, which has been implicated in the repair 
of the replication-associated DNA damage. The MMS22 proteins 
are involved in repairing double-stranded DNA breaks created 
by the cleavage reaction of topoisomerase II.
Length=610

 Score = 836 bits (2161),  Expect = 0.0, Method: Composition-based stats.
 Identities = 347/639 (54%), Positives = 429/639 (67%), Gaps = 30/639 (5%)

Query  1301  FENGWLSLFISLPLNEFDSCGLVRIGARFQEAHDNWLMVKRLLSPVLDNYDTNAETQPIS  1360
              E+ W  LF  LPL E D+ G+   G+RF    +NW +VKRLLSPV ++YD+N E    S
Sbjct  1     SESLWQRLFTLLPLPEIDAIGITTFGSRFPTPKENWSLVKRLLSPVFEDYDSNKEQP--S  58

Query  1361  CNNYCRALFRRCYHLINGWGWRDCRPIMQLLYDFFAKRHLYDLKLEESFKSPSFLDELDR  1420
              N YCRALF RCY L + WGWRDC  ++  LYDFF  R   DL+ EES+KSP FLDELDR
Sbjct  59    YNRYCRALFGRCYFLNSRWGWRDCETLLLQLYDFFKSRKFADLEEEESYKSPPFLDELDR  118

Query  1421  NPSFDVQPGDPSFHIFLKILATGLRFLPLFCDKKQIRNFAWRLLPNHDGRYPKEKPISQS  1480
              PS D++PGD  FHIFLK+LA  + FL     KK+I+N   RL PNH  +Y KE PISQS
Sbjct  119   RPSLDIEPGDTCFHIFLKLLALAISFLR--ESKKKIKNLVERLTPNHKRQYTKEDPISQS  176

Query  1481  DLDAVRNHHDLLCTLFFAVPDGCRPRLEIIKTLVDPAISHRETCNISIRAWSRLVRFKLS  1540
             DL A+RN H+LLCTL +A PD  RPRLE I  LV+PA SH+E C ISIRAW +L RF +S
Sbjct  177   DLAALRNRHNLLCTLAWASPDSLRPRLEEILDLVEPADSHKEACLISIRAWGQLARFVIS  236

Query  1541  TDEDLSGLEPFADWLCYFLGEFLRQHSIARKEIEAQNIIER-FSQEEVEKTISQNQRQIE  1599
             T +D+S LEPF DWL   + EFL Q+ +AR EIEAQN + + F     +  + QN+R IE
Sbjct  237   TQKDVSILEPFVDWLNNVVSEFLDQYVLARSEIEAQNEMWKSFLHNLADILVEQNKRTIE  296

Query  1600  SLLTIALGGLQSAVRASPTLEHARVVLCKAPIRAILGLFNPRVARLNTVVSEALQVIIAY  1659
             SLL  AL  LQ  ++ SPTLEHA V+L KAP++AIL LF+ RV R+N    EAL  I ++
Sbjct  297   SLLHTALRSLQDVIQISPTLEHANVLLSKAPLKAILSLFDSRVPRVN---QEALDTIQSF  353

Query  1660  LQKCNENPVAAAKTTAVPVDEDSQEYGDWTDIEAIYGGESPPVSRGVEHVESIFLPAVSR  1719
             L      P   ++  +   D+DSQ+YGD  DIE +Y  E        E + S+  PA+S+
Sbjct  354   L------PAVTSEEQSSSEDDDSQDYGDLDDIELLYEEELTK--EFFELLRSLLHPALSQ  405

Query  1720  LVSNCFGEDYCPEDATLLKVVDCWTSIASVLVKHGLKHWDNYLGHYDGESWSSLRSTVQT  1779
             L+SNCFGED CPEDA LL V+DCWTSIASVLVK+ L+ W +Y   +  ESW  LR+T Q 
Sbjct  406   LLSNCFGEDRCPEDAVLLPVLDCWTSIASVLVKNNLRWWSSYYSGFGLESWIYLRNTTQR  465

Query  1780  RKFTPLFLASCIEKDPECLSECRHLILSMWLSSLVERVSMLKFQHRLTEALLNLDTMNPL  1839
             RKFTPLFLAS +EKD    SEC+ L+L +WLSSLV+RVS LKFQH LTE LLNL   +P+
Sbjct  466   RKFTPLFLASLLEKDASFFSECKELVLGLWLSSLVKRVSSLKFQHSLTELLLNLLQRDPI  525

Query  1840  LHNLPFSKDRQNDRYSISLDDLGQRRLSLLSSLLSNMRAHVQGLEDTESRELSSTRRDYR  1899
             L NLPF   +    YSI+L     RRLSLLS+LLSNMR          SR LS ++ +Y 
Sbjct  526   LQNLPFLAKKT---YSITLTTGENRRLSLLSNLLSNMR----------SRSLSLSKAEYT  572

Query  1900  ELIQRMMASMKANYQELGSGGASAQGAYVDFVHRIVGFL  1938
             ELIQ ++ SMK  YQ+LGS   SA GAYVDFVHR+VGF+
Sbjct  573   ELIQELLRSMKDVYQKLGSSS-SAHGAYVDFVHRVVGFI  610



Lambda      K        H        a         alpha
   0.317    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2820658304


Query= TCONS_00012475

Length=2275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:370511 pfam09462, Mus7, Mus7/MMS22 family. This family includ...  836     0.0  


>CDD:370511 pfam09462, Mus7, Mus7/MMS22 family.  This family includes a conserved 
region from the Mus7 protein. Mus7 is involved in the 
repair of replication-associated DNA damage in the fission 
yeast Schizosaccharomyces pombe. Mus7 functions in the same 
pathway as Mus81, a subunit of the Mus81-Eme1 structure-specific 
endonuclease, which has been implicated in the repair 
of the replication-associated DNA damage. The MMS22 proteins 
are involved in repairing double-stranded DNA breaks created 
by the cleavage reaction of topoisomerase II.
Length=610

 Score = 836 bits (2161),  Expect = 0.0, Method: Composition-based stats.
 Identities = 347/639 (54%), Positives = 429/639 (67%), Gaps = 30/639 (5%)

Query  1301  FENGWLSLFISLPLNEFDSCGLVRIGARFQEAHDNWLMVKRLLSPVLDNYDTNAETQPIS  1360
              E+ W  LF  LPL E D+ G+   G+RF    +NW +VKRLLSPV ++YD+N E    S
Sbjct  1     SESLWQRLFTLLPLPEIDAIGITTFGSRFPTPKENWSLVKRLLSPVFEDYDSNKEQP--S  58

Query  1361  CNNYCRALFRRCYHLINGWGWRDCRPIMQLLYDFFAKRHLYDLKLEESFKSPSFLDELDR  1420
              N YCRALF RCY L + WGWRDC  ++  LYDFF  R   DL+ EES+KSP FLDELDR
Sbjct  59    YNRYCRALFGRCYFLNSRWGWRDCETLLLQLYDFFKSRKFADLEEEESYKSPPFLDELDR  118

Query  1421  NPSFDVQPGDPSFHIFLKILATGLRFLPLFCDKKQIRNFAWRLLPNHDGRYPKEKPISQS  1480
              PS D++PGD  FHIFLK+LA  + FL     KK+I+N   RL PNH  +Y KE PISQS
Sbjct  119   RPSLDIEPGDTCFHIFLKLLALAISFLR--ESKKKIKNLVERLTPNHKRQYTKEDPISQS  176

Query  1481  DLDAVRNHHDLLCTLFFAVPDGCRPRLEIIKTLVDPAISHRETCNISIRAWSRLVRFKLS  1540
             DL A+RN H+LLCTL +A PD  RPRLE I  LV+PA SH+E C ISIRAW +L RF +S
Sbjct  177   DLAALRNRHNLLCTLAWASPDSLRPRLEEILDLVEPADSHKEACLISIRAWGQLARFVIS  236

Query  1541  TDEDLSGLEPFADWLCYFLGEFLRQHSIARKEIEAQNIIER-FSQEEVEKTISQNQRQIE  1599
             T +D+S LEPF DWL   + EFL Q+ +AR EIEAQN + + F     +  + QN+R IE
Sbjct  237   TQKDVSILEPFVDWLNNVVSEFLDQYVLARSEIEAQNEMWKSFLHNLADILVEQNKRTIE  296

Query  1600  SLLTIALGGLQSAVRASPTLEHARVVLCKAPIRAILGLFNPRVARLNTVVSEALQVIIAY  1659
             SLL  AL  LQ  ++ SPTLEHA V+L KAP++AIL LF+ RV R+N    EAL  I ++
Sbjct  297   SLLHTALRSLQDVIQISPTLEHANVLLSKAPLKAILSLFDSRVPRVN---QEALDTIQSF  353

Query  1660  LQKCNENPVAAAKTTAVPVDEDSQEYGDWTDIEAIYGGESPPVSRGVEHVESIFLPAVSR  1719
             L      P   ++  +   D+DSQ+YGD  DIE +Y  E        E + S+  PA+S+
Sbjct  354   L------PAVTSEEQSSSEDDDSQDYGDLDDIELLYEEELTK--EFFELLRSLLHPALSQ  405

Query  1720  LVSNCFGEDYCPEDATLLKVVDCWTSIASVLVKHGLKHWDNYLGHYDGESWSSLRSTVQT  1779
             L+SNCFGED CPEDA LL V+DCWTSIASVLVK+ L+ W +Y   +  ESW  LR+T Q 
Sbjct  406   LLSNCFGEDRCPEDAVLLPVLDCWTSIASVLVKNNLRWWSSYYSGFGLESWIYLRNTTQR  465

Query  1780  RKFTPLFLASCIEKDPECLSECRHLILSMWLSSLVERVSMLKFQHRLTEALLNLDTMNPL  1839
             RKFTPLFLAS +EKD    SEC+ L+L +WLSSLV+RVS LKFQH LTE LLNL   +P+
Sbjct  466   RKFTPLFLASLLEKDASFFSECKELVLGLWLSSLVKRVSSLKFQHSLTELLLNLLQRDPI  525

Query  1840  LHNLPFSKDRQNDRYSISLDDLGQRRLSLLSSLLSNMRAHVQGLEDTESRELSSTRRDYR  1899
             L NLPF   +    YSI+L     RRLSLLS+LLSNMR          SR LS ++ +Y 
Sbjct  526   LQNLPFLAKKT---YSITLTTGENRRLSLLSNLLSNMR----------SRSLSLSKAEYT  572

Query  1900  ELIQRMMASMKANYQELGSGGASAQGAYVDFVHRIVGFL  1938
             ELIQ ++ SMK  YQ+LGS   SA GAYVDFVHR+VGF+
Sbjct  573   ELIQELLRSMKDVYQKLGSSS-SAHGAYVDFVHRVVGFI  610



Lambda      K        H        a         alpha
   0.317    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2820658304


Query= TCONS_00012476

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0647    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00012477

Length=644


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 812609290


Query= TCONS_00012478

Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  76.1    3e-20


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 76.1 bits (188),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query  11  VYVGGLDQAVTVQTLAEAFVPFGEVVDITLPKPDVPNSGDLHRGFGYVEFDLPEDAAEAI  70
           ++VG L    T + L + F  FG +  I L    V +     +GF +VEF+  EDA +AI
Sbjct  1   LFVGNLPPDTTEEDLKDLFSKFGPIKSIRL----VRDETGRSKGFAFVEFEDEEDAEKAI  56

Query  71  DNMDGSELYGRTIK  84
           + ++G EL GR +K
Sbjct  57  EALNGKELGGRELK  70



Lambda      K        H        a         alpha
   0.316    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00018347

Length=173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        76.2    2e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 76.2 bits (188),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/90 (29%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query  72   NLVTHFTASLMAGFVATTVCSPVDVIKTRVMTAS-PAQTQGHTLLGLLRDIYRKEGFAWA  130
            + +    A  +AG +A TV  P+DV+KTR+       +++G  +L   + IY++EG    
Sbjct  4    SFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGL  63

Query  131  FRGWVPSFVRLGPHTIATFVFLEEHKKLYR  160
            ++G +P+ +R+ P     F   E  K+L  
Sbjct  64   YKGLLPNLLRVAPAAAIYFGTYETLKRLLL  93



Lambda      K        H        a         alpha
   0.324    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00018346

Length=173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        76.2    2e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 76.2 bits (188),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/90 (29%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query  72   NLVTHFTASLMAGFVATTVCSPVDVIKTRVMTAS-PAQTQGHTLLGLLRDIYRKEGFAWA  130
            + +    A  +AG +A TV  P+DV+KTR+       +++G  +L   + IY++EG    
Sbjct  4    SFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGL  63

Query  131  FRGWVPSFVRLGPHTIATFVFLEEHKKLYR  160
            ++G +P+ +R+ P     F   E  K+L  
Sbjct  64   YKGLLPNLLRVAPAAAIYFGTYETLKRLLL  93



Lambda      K        H        a         alpha
   0.324    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00012480

Length=152
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  76.1    8e-20


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 76.1 bits (188),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query  11  VYVGGLDQAVTVQTLAEAFVPFGEVVDITLPKPDVPNSGDLHRGFGYVEFDLPEDAAEAI  70
           ++VG L    T + L + F  FG +  I L    V +     +GF +VEF+  EDA +AI
Sbjct  1   LFVGNLPPDTTEEDLKDLFSKFGPIKSIRL----VRDETGRSKGFAFVEFEDEEDAEKAI  56

Query  71  DNMDGSELYGRTIK  84
           + ++G EL GR +K
Sbjct  57  EALNGKELGGRELK  70



Lambda      K        H        a         alpha
   0.310    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00012483

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  76.1    6e-20


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 76.1 bits (188),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query  11  VYVGGLDQAVTVQTLAEAFVPFGEVVDITLPKPDVPNSGDLHRGFGYVEFDLPEDAAEAI  70
           ++VG L    T + L + F  FG +  I L    V +     +GF +VEF+  EDA +AI
Sbjct  1   LFVGNLPPDTTEEDLKDLFSKFGPIKSIRL----VRDETGRSKGFAFVEFEDEEDAEKAI  56

Query  71  DNMDGSELYGRTIK  84
           + ++G EL GR +K
Sbjct  57  EALNGKELGGRELK  70



Lambda      K        H        a         alpha
   0.316    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00018348

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426708 pfam02297, COX6B, Cytochrome oxidase c subunit VIb. Cy...  87.0    3e-25


>CDD:426708 pfam02297, COX6B, Cytochrome oxidase c subunit VIb.  Cytochrome 
c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal 
oxidase in the mitochondrial electron transport chain. This 
family is composed of the potentially heme-binding subunit 
IVb of the oxidase.
Length=65

 Score = 87.0 bits (216),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 35/56 (63%), Gaps = 0/56 (0%)

Query  14  ARFPQQNQTKHCWQNYVDYHKCINAKGEDFRPCRQFYHAYRSLCPKAWTDRWDNQR  69
            RFP QNQ KHCWQ   D+ KC++  G D  PC++    Y SLCP +W + +D QR
Sbjct  1   PRFPNQNQRKHCWQARDDFFKCLDKNGIDNSPCKKEKKNYESLCPASWVEYFDEQR  56



Lambda      K        H        a         alpha
   0.325    0.137    0.492    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00018349

Length=173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        76.2    2e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 76.2 bits (188),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/90 (29%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query  72   NLVTHFTASLMAGFVATTVCSPVDVIKTRVMTAS-PAQTQGHTLLGLLRDIYRKEGFAWA  130
            + +    A  +AG +A TV  P+DV+KTR+       +++G  +L   + IY++EG    
Sbjct  4    SFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGL  63

Query  131  FRGWVPSFVRLGPHTIATFVFLEEHKKLYR  160
            ++G +P+ +R+ P     F   E  K+L  
Sbjct  64   YKGLLPNLLRVAPAAAIYFGTYETLKRLLL  93



Lambda      K        H        a         alpha
   0.324    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00012486

Length=173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        76.2    2e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 76.2 bits (188),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/90 (29%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query  72   NLVTHFTASLMAGFVATTVCSPVDVIKTRVMTAS-PAQTQGHTLLGLLRDIYRKEGFAWA  130
            + +    A  +AG +A TV  P+DV+KTR+       +++G  +L   + IY++EG    
Sbjct  4    SFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGL  63

Query  131  FRGWVPSFVRLGPHTIATFVFLEEHKKLYR  160
            ++G +P+ +R+ P     F   E  K+L  
Sbjct  64   YKGLLPNLLRVAPAAAIYFGTYETLKRLLL  93



Lambda      K        H        a         alpha
   0.324    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00012485

Length=173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        76.2    2e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 76.2 bits (188),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/90 (29%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query  72   NLVTHFTASLMAGFVATTVCSPVDVIKTRVMTAS-PAQTQGHTLLGLLRDIYRKEGFAWA  130
            + +    A  +AG +A TV  P+DV+KTR+       +++G  +L   + IY++EG    
Sbjct  4    SFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGL  63

Query  131  FRGWVPSFVRLGPHTIATFVFLEEHKKLYR  160
            ++G +P+ +R+ P     F   E  K+L  
Sbjct  64   YKGLLPNLLRVAPAAAIYFGTYETLKRLLL  93



Lambda      K        H        a         alpha
   0.324    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00012484

Length=173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        76.2    2e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 76.2 bits (188),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/90 (29%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query  72   NLVTHFTASLMAGFVATTVCSPVDVIKTRVMTAS-PAQTQGHTLLGLLRDIYRKEGFAWA  130
            + +    A  +AG +A TV  P+DV+KTR+       +++G  +L   + IY++EG    
Sbjct  4    SFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGL  63

Query  131  FRGWVPSFVRLGPHTIATFVFLEEHKKLYR  160
            ++G +P+ +R+ P     F   E  K+L  
Sbjct  64   YKGLLPNLLRVAPAAAIYFGTYETLKRLLL  93



Lambda      K        H        a         alpha
   0.324    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00012488

Length=173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        76.2    2e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 76.2 bits (188),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/90 (29%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query  72   NLVTHFTASLMAGFVATTVCSPVDVIKTRVMTAS-PAQTQGHTLLGLLRDIYRKEGFAWA  130
            + +    A  +AG +A TV  P+DV+KTR+       +++G  +L   + IY++EG    
Sbjct  4    SFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGL  63

Query  131  FRGWVPSFVRLGPHTIATFVFLEEHKKLYR  160
            ++G +P+ +R+ P     F   E  K+L  
Sbjct  64   YKGLLPNLLRVAPAAAIYFGTYETLKRLLL  93



Lambda      K        H        a         alpha
   0.324    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00012487

Length=173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        76.2    2e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 76.2 bits (188),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 26/90 (29%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query  72   NLVTHFTASLMAGFVATTVCSPVDVIKTRVMTAS-PAQTQGHTLLGLLRDIYRKEGFAWA  130
            + +    A  +AG +A TV  P+DV+KTR+       +++G  +L   + IY++EG    
Sbjct  4    SFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGL  63

Query  131  FRGWVPSFVRLGPHTIATFVFLEEHKKLYR  160
            ++G +P+ +R+ P     F   E  K+L  
Sbjct  64   YKGLLPNLLRVAPAAAIYFGTYETLKRLLL  93



Lambda      K        H        a         alpha
   0.324    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00012489

Length=91
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426708 pfam02297, COX6B, Cytochrome oxidase c subunit VIb. Cy...  88.2    2e-25


>CDD:426708 pfam02297, COX6B, Cytochrome oxidase c subunit VIb.  Cytochrome 
c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal 
oxidase in the mitochondrial electron transport chain. This 
family is composed of the potentially heme-binding subunit 
IVb of the oxidase.
Length=65

 Score = 88.2 bits (219),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 35/56 (63%), Gaps = 0/56 (0%)

Query  26  ARFPQQNQTKHCWQNYVDYHKCINAKGEDFRPCRQFYHAYRSLCPKAWTDRWDNQR  81
            RFP QNQ KHCWQ   D+ KC++  G D  PC++    Y SLCP +W + +D QR
Sbjct  1   PRFPNQNQRKHCWQARDDFFKCLDKNGIDNSPCKKEKKNYESLCPASWVEYFDEQR  56



Lambda      K        H        a         alpha
   0.322    0.137    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00012490

Length=282


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00012491

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396130 pfam01409, tRNA-synt_2d, tRNA synthetases class II cor...  161     5e-47
CDD:460826 pfam03147, FDX-ACB, Ferredoxin-fold anticodon binding ...  113     7e-31


>CDD:396130 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain 
(F).  Other tRNA synthetase sub-families are too dissimilar 
to be included. This family includes only phenylalanyl-tRNA 
synthetases. This is the core catalytic domain.
Length=245

 Score = 161 bits (411),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 92/316 (29%), Positives = 126/316 (40%), Gaps = 89/316 (28%)

Query  98   GRRLYLDENHPLAITRKLIESQFPGPVYGNYSEKNP-VVSVAQNFDVLGFAPDHPGRSRT  156
            GRR+     HPL  T + I   F G   G    + P V S   NFD L    DHP R   
Sbjct  8    GRRIEPGGLHPLTRTLERIRDIFLG--MGFEEVEGPEVESDFYNFDALNIPQDHPARDMQ  65

Query  157  DTYYI-------NDKTVLRTHTSAHQQAYFQQINRNEATRPEEVGYTVVADVYRRDAIDR  209
            DT+Y+         + +LRTHT+  Q     +       +        +  V+RRD +D 
Sbjct  66   DTFYLKKPLKPVARRLLLRTHTTPVQARTLAK-KPKPPIK-----IFSIGRVFRRDQVDA  119

Query  210  SHYPVFHQMEGAMLWKRPSTDPLKHAAHTAAAIMEDVNRIPAHGVPVEDPNPTIHVERNP  269
            +H P FHQ+EG ++                              V   D           
Sbjct  120  THLPEFHQVEGLVV---------------------------DENVTFAD-----------  141

Query  270  LQAEHHAAEEVEAVAAHLKRSLERMVVKIFSEAREATAAADPTAQAEPLKVRWVEAYFPF  329
                             LK  LE  + K F                   KVR+  +YFPF
Sbjct  142  -----------------LKGVLEEFLRKFFGFEV---------------KVRFRPSYFPF  169

Query  330  TSPSWELEVFW--QGDWLEILGCGVIKQDLLINSDVP-DRIGWAFGLGLERIAMLLFNIP  386
            T PS E++V+    G WLE+ G G++  ++L    +  D  G+AFGLG+ER+AML + I 
Sbjct  170  TEPSAEVDVYVCKLGGWLEVGGAGMVHPNVLEAVGIDEDYSGFAFGLGVERLAMLKYGID  229

Query  387  DIRLFWSRDERFLSQF  402
            DIR  +  D RFL QF
Sbjct  230  DIRDLYENDLRFLRQF  245


>CDD:460826 pfam03147, FDX-ACB, Ferredoxin-fold anticodon binding domain. 
 This is the anticodon binding domain found in some phenylalanyl 
tRNA synthetases. The domain has a ferredoxin fold.
Length=94

 Score = 113 bits (285),  Expect = 7e-31, Method: Composition-based stats.
 Identities = 38/107 (36%), Positives = 59/107 (55%), Gaps = 15/107 (14%)

Query  414  SKHPACYKDVAFWLPSAAVSGGSAAGGAVPIHENDIMEIVRGVAGDLVEDVRLIDEFTHP  473
            SK+PA  +D+AF +                +   DI++ +R   G+L+E V L D +   
Sbjct  1    SKYPAVRRDLAFVVDED-------------VPAADILKAIREAGGELLESVELFDVYRGE  47

Query  474  K--TGRKSMCYRINYRSLERTLTNEETNGLHEKLREKLVSQLGVELR  518
            K   G+KS+ +R+ ++S ERTLT+EE N + EK+ E L  + G ELR
Sbjct  48   KIPEGKKSLAFRLTFQSPERTLTDEEVNAIIEKIVEALEKKFGAELR  94



Lambda      K        H        a         alpha
   0.318    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00012492

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  203     2e-65
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  88.8    2e-21


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 203 bits (518),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 88/211 (42%), Positives = 109/211 (52%), Gaps = 7/211 (3%)

Query  88   VLHTHGGGTIQGDVALFVKPLSLQVQQTGVQVFSVDYRLAPENPHPTPVEDCYAGLTWLY  147
            +++ HGGG + G      +       + G  V SVDYRLAPE+P P   +D YA L WL 
Sbjct  1    LVYFHGGGFVLGSADTHDRLCRRLAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLA  60

Query  148  EHAEEFSVDRSRIATMGESAGGLLAAGITLMARDRGLAPPIAKQILIYPMLDDRNTVP--  205
            E A E   D SRIA  G+SAGG LAA + L ARD GL P  A Q+LIYP  D R   P  
Sbjct  61   EQAAELGADPSRIAVAGDSAGGNLAAAVALRARDEGL-PKPAGQVLIYPGTDLRTESPSY  119

Query  206  -NPELENFALWDCNDNITAWTALLGTDIGKDNVSQYAAPARAVSVQGLPPTYIDVGELDI  264
               E  +  L         W   L     +D+    A+P  A  + GLPP  + V E D 
Sbjct  120  LAREFADGPLLTRAAMDWFWRLYLP-GADRDDP--LASPLFASDLSGLPPALVVVAEFDP  176

Query  265  FRDEDIAYAARIASANISVELHVYPGLPHAF  295
             RDE  AYA R+ +A + VEL  YPG+PH F
Sbjct  177  LRDEGEAYAERLRAAGVPVELIEYPGMPHGF  207


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 88.8 bits (221),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 33/101 (33%), Positives = 51/101 (50%), Gaps = 6/101 (6%)

Query  76   KKTSTPVAVGPAVLHTHGGGTIQGDV---ALFVKPLSLQVQQTGVQVFSVDYRLAPENPH  132
            K    P    P V+  HGGG   GD      F+      + + G  V S++YRL+ +   
Sbjct  7    KNAKGPY---PVVIWIHGGGWNSGDKEADMGFMTNTVKALLKAGYAVASINYRLSTDAKF  63

Query  133  PTPVEDCYAGLTWLYEHAEEFSVDRSRIATMGESAGGLLAA  173
            P  ++D  A + +L  +A ++ +D ++IA MG SAGG LA 
Sbjct  64   PAQIQDVKAAIRFLRANAAKYGIDTNKIALMGFSAGGHLAL  104



Lambda      K        H        a         alpha
   0.319    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00012493

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00012494

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:282674 pfam04847, Calcipressin, Calcipressin. Calcipressin is...  80.3    7e-19


>CDD:282674 pfam04847, Calcipressin, Calcipressin.  Calcipressin is also 
known as calcineurin-binding protein, since it inhibits calcineurin-mediated 
transcriptional modulation by binding to calcineurin's 
catalytic domain.
Length=183

 Score = 80.3 bits (198),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 44/172 (26%), Positives = 71/172 (41%), Gaps = 10/172 (6%)

Query  66   FQPASLASIRSQIESIAPLNSFSPLPSLRRIVCSFHSEDDALRVRKLLDGQSLLNRNVCT  125
                +   +R+   +   + ++ PL S RRI+ +F SE+ A R R  L  +         
Sbjct  3    VDQDNKEKLRALFRTYDDIVTWQPLKSFRRIIVNFSSEEAAARARIQLHWEKTEFLGKKL  62

Query  126  KIYFGEPTPLLDEGRPKLLEAPHLDKLFFISPPPSPPHGWVMRTEDPPNKEVHASDLAQA  185
            ++YF +P  +  +     L  P  +K F ISPP SPP GW  + ED PN+ V   DL  A
Sbjct  63   RLYFAQPQTIQRDLAKSHLAPPQPEKQFLISPPASPPVGWEQKEEDAPNRHVLNEDLQYA  122

Query  186  LAQLKTEQSAPVSGPVDPG---------TPMSMSDEKRTGSWPIAMSGQRSR  228
            LA+L   +   +    D           + +  S+     +        R +
Sbjct  123  LAKLGPGEKYQLHAGTDTTPSVVVTLLKSHVGESEIDEEETNGD-GDTPRPK  173



Lambda      K        H        a         alpha
   0.314    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00012495

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00012496

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395229 pfam00293, NUDIX, NUDIX domain                             56.3    2e-11


>CDD:395229 pfam00293, NUDIX, NUDIX domain.  
Length=132

 Score = 56.3 bits (136),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query  28   RLVAGVVPLSHDKTRVLMIQSVGS---GGWVLPKGGWETDEALAQQAACREAWEEAGVIC  84
            R+  GVV L+ +K RVL+++       G W LP G  E  E   ++AA RE  EE G+  
Sbjct  3    RVAVGVVLLN-EKGRVLLVRRSKKPFPGWWSLPGGKVEPGETP-EEAARRELEEETGLEP  60

Query  85   TVHKDLGLIPDMRPSSVLTSSAPKASYQFFEVTVDREEDQWPEMHKRKRQWVTY  138
             + + LG +  + P         +  Y F        E         + +WV  
Sbjct  61   ELLELLGSLHYLAPFDGRFPDEHEILYVFLAEVEGELEPDPDGEV-EEVRWVPL  113



Lambda      K        H        a         alpha
   0.314    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00012497

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460104 pfam01193, RNA_pol_L, RNA polymerase Rpb3/Rpb11 dimeri...  149     9e-45
CDD:425983 pfam01000, RNA_pol_A_bac, RNA polymerase Rpb3/RpoA ins...  96.2    3e-25


>CDD:460104 pfam01193, RNA_pol_L, RNA polymerase Rpb3/Rpb11 dimerization 
domain.  The two eukaryotic subunits Rpb3 and Rpb11 dimerize 
to from a platform onto which the other subunits of the RNA 
polymerase assemble (D/L in archaea). The prokaryotic equivalent 
of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The 
dimerization domain of the alpha subunit/Rpb3 is interrupted 
by an insert domain (pfam01000). Some of the alpha subunits 
also contain iron-sulphur binding domains (pfam00037). Rpb11 
is found as a continuous domain. Members of this family 
include: alpha subunit from eubacteria, alpha subunits from 
chloroplasts, Rpb3 subunits from eukaryotes, Rpb11 subunits 
from eukaryotes, RpoD subunits from archaeal spp, and RpoL 
subunits from archaeal spp.
Length=191

 Score = 149 bits (379),  Expect = 9e-45, Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 77/236 (33%), Gaps = 45/236 (19%)

Query  15   FKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQ  74
            F L   D    N+LRR++L+EVP +AID V++E NTS   DE  AHRLGLIPL +     
Sbjct  1    FLLRGEDHTLGNALRRILLSEVPGVAIDAVKIEGNTSEFSDEPGAHRLGLIPLLNLKELF  60

Query  75   DVEYTRDCDCEDHCARCSVTLTLHARCTGDEIMPVYARDLVVSGERANEWVGDPVITDPE  134
                + D +  +        +T     T  ++                            
Sbjct  61   FKLSSDDDETLELDKEGPGEVTAGDINTDSDV----------------------------  92

Query  135  GKGPLICKLRRGQELKMTCVAKKGIAKEHAKWAPTAAVGFEYDPHNNLRHVDYWYEEDPI  194
                               +         A     AA+  E +      +V     +D  
Sbjct  93   -----------------EVIEIINPDLHIATLEEEAALEMELEVVKGRGYVPAEKNKDVD  135

Query  195  KEWPVSANAAWEHAAPPDQPFDYDAQPNNFYIDVESIGNLEPDMIIQQGIVVLQRK  250
                     +             +   +    +VE+ G++ P+  +++   +L+ K
Sbjct  136  DPIGDIPIDSIFSPVEKVNYVVENTDYDKLIFEVETDGSIPPEEALKEAAKILKEK  191


>CDD:425983 pfam01000, RNA_pol_A_bac, RNA polymerase Rpb3/RpoA insert domain. 
 Members of this family include: alpha subunit from eubacteria 
alpha subunits from chloroplasts Rpb3 subunits from 
eukaryotes RpoD subunits from archaeal.
Length=117

 Score = 96.2 bits (240),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 40/109 (37%), Positives = 55/109 (50%), Gaps = 16/109 (15%)

Query  58   LAHRLGLIPLNSKNCDQDVEYTRDCDCEDH-CARCSVTLTLHARCTGDEIMPVYARDLVV  116
            +AH  GLIP  S++  + +   ++  C++  C  CSVTLTL  +  G     V A DL  
Sbjct  6    VAHEFGLIPGVSEDVLEIILNLKELVCKEEGCEECSVTLTLDVKGPG----EVTAGDL--  59

Query  117  SGERANEWVGDPVITDPEGKGPLICKLRRGQELKMTCVAKKGIAKEHAK  165
                  E   D  I +P+    LI  LR+GQEL++   AKKG    HAK
Sbjct  60   ------ESDPDVEIVNPD---ILIATLRKGQELELEAYAKKGRGYVHAK  99



Lambda      K        H        a         alpha
   0.316    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 379043084


Query= TCONS_00012498

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460104 pfam01193, RNA_pol_L, RNA polymerase Rpb3/Rpb11 dimeri...  151     2e-44
CDD:425983 pfam01000, RNA_pol_A_bac, RNA polymerase Rpb3/RpoA ins...  96.9    6e-25


>CDD:460104 pfam01193, RNA_pol_L, RNA polymerase Rpb3/Rpb11 dimerization 
domain.  The two eukaryotic subunits Rpb3 and Rpb11 dimerize 
to from a platform onto which the other subunits of the RNA 
polymerase assemble (D/L in archaea). The prokaryotic equivalent 
of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The 
dimerization domain of the alpha subunit/Rpb3 is interrupted 
by an insert domain (pfam01000). Some of the alpha subunits 
also contain iron-sulphur binding domains (pfam00037). Rpb11 
is found as a continuous domain. Members of this family 
include: alpha subunit from eubacteria, alpha subunits from 
chloroplasts, Rpb3 subunits from eukaryotes, Rpb11 subunits 
from eukaryotes, RpoD subunits from archaeal spp, and RpoL 
subunits from archaeal spp.
Length=191

 Score = 151 bits (383),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 77/236 (33%), Gaps = 45/236 (19%)

Query  113  FKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQ  172
            F L   D    N+LRR++L+EVP +AID V++E NTS   DE  AHRLGLIPL +     
Sbjct  1    FLLRGEDHTLGNALRRILLSEVPGVAIDAVKIEGNTSEFSDEPGAHRLGLIPLLNLKELF  60

Query  173  DVEYTRDCDCEDHCARCSVTLTLHARCTGDEIMPVYARDLVVSGERANEWVGDPVITDPE  232
                + D +  +        +T     T  ++                            
Sbjct  61   FKLSSDDDETLELDKEGPGEVTAGDINTDSDV----------------------------  92

Query  233  GKGPLICKLRRGQELKMTCVAKKGIAKEHAKWAPTAAVGFEYDPHNNLRHVDYWYEEDPI  292
                               +         A     AA+  E +      +V     +D  
Sbjct  93   -----------------EVIEIINPDLHIATLEEEAALEMELEVVKGRGYVPAEKNKDVD  135

Query  293  KEWPVSANAAWEHAAPPDQPFDYDAQPNNFYIDVESIGNLEPDMIIQQGIVVLQRK  348
                     +             +   +    +VE+ G++ P+  +++   +L+ K
Sbjct  136  DPIGDIPIDSIFSPVEKVNYVVENTDYDKLIFEVETDGSIPPEEALKEAAKILKEK  191


>CDD:425983 pfam01000, RNA_pol_A_bac, RNA polymerase Rpb3/RpoA insert domain. 
 Members of this family include: alpha subunit from eubacteria 
alpha subunits from chloroplasts Rpb3 subunits from 
eukaryotes RpoD subunits from archaeal.
Length=117

 Score = 96.9 bits (242),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 40/109 (37%), Positives = 55/109 (50%), Gaps = 16/109 (15%)

Query  156  LAHRLGLIPLNSKNCDQDVEYTRDCDCEDH-CARCSVTLTLHARCTGDEIMPVYARDLVV  214
            +AH  GLIP  S++  + +   ++  C++  C  CSVTLTL  +  G     V A DL  
Sbjct  6    VAHEFGLIPGVSEDVLEIILNLKELVCKEEGCEECSVTLTLDVKGPG----EVTAGDL--  59

Query  215  SGERANEWVGDPVITDPEGKGPLICKLRRGQELKMTCVAKKGIAKEHAK  263
                  E   D  I +P+    LI  LR+GQEL++   AKKG    HAK
Sbjct  60   ------ESDPDVEIVNPD---ILIATLRKGQELELEAYAKKGRGYVHAK  99



Lambda      K        H        a         alpha
   0.315    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00012499

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395229 pfam00293, NUDIX, NUDIX domain                             57.1    9e-12


>CDD:395229 pfam00293, NUDIX, NUDIX domain.  
Length=132

 Score = 57.1 bits (138),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query  27   RLVAGVVPLSHDKTRVLMIQSVGS---GGWVLPKGGWETDEALAQQAACREAWEEAGVIC  83
            R+  GVV L+ +K RVL+++       G W LP G  E  E   ++AA RE  EE G+  
Sbjct  3    RVAVGVVLLN-EKGRVLLVRRSKKPFPGWWSLPGGKVEPGETP-EEAARRELEEETGLEP  60

Query  84   TVHKDLGLIPDMRPSSVLTSSAPKASYQFFEVTVDREEDQWPEMHKRKRQWVTY  137
             + + LG +  + P         +  Y F        E         + +WV  
Sbjct  61   ELLELLGSLHYLAPFDGRFPDEHEILYVFLAEVEGELEPDPDGEV-EEVRWVPL  113



Lambda      K        H        a         alpha
   0.313    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00012501

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00018351

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00018353

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00018352

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00018354

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00012502

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00012504

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00012503

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00012505

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00018355

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00018356

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00012506

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00012507

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00012508

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00012509

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00012510

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00012512

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00018357

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00012514

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432862 pfam12898, Stc1, Stc1 domain. The domain contains 8 co...  98.9    5e-27


>CDD:432862 pfam12898, Stc1, Stc1 domain.  The domain contains 8 conserved 
cysteines that may bind to zinc. In S. pombe this protein 
acts as a protein linker which links the chromatin modifying 
CLRC complex to RNAi by tethering it to the RITS complex. The 
region is reported as a LIM domain here, but has a slightly 
different arrangement of its CxxC pairs from the Pfam LIM 
domain pfam00412, hence why it is not part of that family. 
The tandem zinc-finger structure could mediate protein-protein 
interactions.
Length=78

 Score = 98.9 bits (247),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 35/84 (42%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query  32   CGTCSKIRSSSNYSNRQLEALRHAILSHGVNVALTKNNAKCRICSGNQTVELKCCICDKI  91
            C  C + +  S +S +QL+ LR  I S G       +  +CR C+G Q  EL C  C K 
Sbjct  1    CKVCGEWKPLSAFSKKQLKKLRGKIASPG------NSGIRCRECTGGQVTELTCEPCGKT  54

Query  92   KSLDEFARAQRQNRDAARCMNCVQ  115
            K LD F+++QR+N D ARC +CVQ
Sbjct  55   KPLDAFSKSQRRNPDTARCKDCVQ  78



Lambda      K        H        a         alpha
   0.313    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00012513

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00012511

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00012515

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432862 pfam12898, Stc1, Stc1 domain. The domain contains 8 co...  97.0    1e-26


>CDD:432862 pfam12898, Stc1, Stc1 domain.  The domain contains 8 conserved 
cysteines that may bind to zinc. In S. pombe this protein 
acts as a protein linker which links the chromatin modifying 
CLRC complex to RNAi by tethering it to the RITS complex. The 
region is reported as a LIM domain here, but has a slightly 
different arrangement of its CxxC pairs from the Pfam LIM 
domain pfam00412, hence why it is not part of that family. 
The tandem zinc-finger structure could mediate protein-protein 
interactions.
Length=78

 Score = 97.0 bits (242),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 35/84 (42%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query  32   CGTCSKIRSSSNYSNRQLEALRHAILSHGVNVALTKNNAKCRICSGNQTVELKCCICDKI  91
            C  C + +  S +S +QL+ LR  I S G       +  +CR C+G Q  EL C  C K 
Sbjct  1    CKVCGEWKPLSAFSKKQLKKLRGKIASPG------NSGIRCRECTGGQVTELTCEPCGKT  54

Query  92   KSLDEFARAQRQNRDAARCMNCVQ  115
            K LD F+++QR+N D ARC +CVQ
Sbjct  55   KPLDAFSKSQRRNPDTARCKDCVQ  78



Lambda      K        H        a         alpha
   0.313    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00018358

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432862 pfam12898, Stc1, Stc1 domain. The domain contains 8 co...  97.0    1e-26


>CDD:432862 pfam12898, Stc1, Stc1 domain.  The domain contains 8 conserved 
cysteines that may bind to zinc. In S. pombe this protein 
acts as a protein linker which links the chromatin modifying 
CLRC complex to RNAi by tethering it to the RITS complex. The 
region is reported as a LIM domain here, but has a slightly 
different arrangement of its CxxC pairs from the Pfam LIM 
domain pfam00412, hence why it is not part of that family. 
The tandem zinc-finger structure could mediate protein-protein 
interactions.
Length=78

 Score = 97.0 bits (242),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 35/84 (42%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query  32   CGTCSKIRSSSNYSNRQLEALRHAILSHGVNVALTKNNAKCRICSGNQTVELKCCICDKI  91
            C  C + +  S +S +QL+ LR  I S G       +  +CR C+G Q  EL C  C K 
Sbjct  1    CKVCGEWKPLSAFSKKQLKKLRGKIASPG------NSGIRCRECTGGQVTELTCEPCGKT  54

Query  92   KSLDEFARAQRQNRDAARCMNCVQ  115
            K LD F+++QR+N D ARC +CVQ
Sbjct  55   KPLDAFSKSQRRNPDTARCKDCVQ  78



Lambda      K        H        a         alpha
   0.313    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00018359

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432862 pfam12898, Stc1, Stc1 domain. The domain contains 8 co...  98.9    4e-27


>CDD:432862 pfam12898, Stc1, Stc1 domain.  The domain contains 8 conserved 
cysteines that may bind to zinc. In S. pombe this protein 
acts as a protein linker which links the chromatin modifying 
CLRC complex to RNAi by tethering it to the RITS complex. The 
region is reported as a LIM domain here, but has a slightly 
different arrangement of its CxxC pairs from the Pfam LIM 
domain pfam00412, hence why it is not part of that family. 
The tandem zinc-finger structure could mediate protein-protein 
interactions.
Length=78

 Score = 98.9 bits (247),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 35/84 (42%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query  32   CGTCSKIRSSSNYSNRQLEALRHAILSHGVNVALTKNNAKCRICSGNQTVELKCCICDKI  91
            C  C + +  S +S +QL+ LR  I S G       +  +CR C+G Q  EL C  C K 
Sbjct  1    CKVCGEWKPLSAFSKKQLKKLRGKIASPG------NSGIRCRECTGGQVTELTCEPCGKT  54

Query  92   KSLDEFARAQRQNRDAARCMNCVQ  115
            K LD F+++QR+N D ARC +CVQ
Sbjct  55   KPLDAFSKSQRRNPDTARCKDCVQ  78



Lambda      K        H        a         alpha
   0.313    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00018360

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00012520

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432862 pfam12898, Stc1, Stc1 domain. The domain contains 8 co...  98.9    4e-27


>CDD:432862 pfam12898, Stc1, Stc1 domain.  The domain contains 8 conserved 
cysteines that may bind to zinc. In S. pombe this protein 
acts as a protein linker which links the chromatin modifying 
CLRC complex to RNAi by tethering it to the RITS complex. The 
region is reported as a LIM domain here, but has a slightly 
different arrangement of its CxxC pairs from the Pfam LIM 
domain pfam00412, hence why it is not part of that family. 
The tandem zinc-finger structure could mediate protein-protein 
interactions.
Length=78

 Score = 98.9 bits (247),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 35/84 (42%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query  32   CGTCSKIRSSSNYSNRQLEALRHAILSHGVNVALTKNNAKCRICSGNQTVELKCCICDKI  91
            C  C + +  S +S +QL+ LR  I S G       +  +CR C+G Q  EL C  C K 
Sbjct  1    CKVCGEWKPLSAFSKKQLKKLRGKIASPG------NSGIRCRECTGGQVTELTCEPCGKT  54

Query  92   KSLDEFARAQRQNRDAARCMNCVQ  115
            K LD F+++QR+N D ARC +CVQ
Sbjct  55   KPLDAFSKSQRRNPDTARCKDCVQ  78



Lambda      K        H        a         alpha
   0.313    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00012516

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432862 pfam12898, Stc1, Stc1 domain. The domain contains 8 co...  98.9    4e-27


>CDD:432862 pfam12898, Stc1, Stc1 domain.  The domain contains 8 conserved 
cysteines that may bind to zinc. In S. pombe this protein 
acts as a protein linker which links the chromatin modifying 
CLRC complex to RNAi by tethering it to the RITS complex. The 
region is reported as a LIM domain here, but has a slightly 
different arrangement of its CxxC pairs from the Pfam LIM 
domain pfam00412, hence why it is not part of that family. 
The tandem zinc-finger structure could mediate protein-protein 
interactions.
Length=78

 Score = 98.9 bits (247),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 35/84 (42%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query  32   CGTCSKIRSSSNYSNRQLEALRHAILSHGVNVALTKNNAKCRICSGNQTVELKCCICDKI  91
            C  C + +  S +S +QL+ LR  I S G       +  +CR C+G Q  EL C  C K 
Sbjct  1    CKVCGEWKPLSAFSKKQLKKLRGKIASPG------NSGIRCRECTGGQVTELTCEPCGKT  54

Query  92   KSLDEFARAQRQNRDAARCMNCVQ  115
            K LD F+++QR+N D ARC +CVQ
Sbjct  55   KPLDAFSKSQRRNPDTARCKDCVQ  78



Lambda      K        H        a         alpha
   0.313    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00018361

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432862 pfam12898, Stc1, Stc1 domain. The domain contains 8 co...  99.3    4e-27


>CDD:432862 pfam12898, Stc1, Stc1 domain.  The domain contains 8 conserved 
cysteines that may bind to zinc. In S. pombe this protein 
acts as a protein linker which links the chromatin modifying 
CLRC complex to RNAi by tethering it to the RITS complex. The 
region is reported as a LIM domain here, but has a slightly 
different arrangement of its CxxC pairs from the Pfam LIM 
domain pfam00412, hence why it is not part of that family. 
The tandem zinc-finger structure could mediate protein-protein 
interactions.
Length=78

 Score = 99.3 bits (248),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 35/84 (42%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query  32   CGTCSKIRSSSNYSNRQLEALRHAILSHGVNVALTKNNAKCRICSGNQTVELKCCICDKI  91
            C  C + +  S +S +QL+ LR  I S G       +  +CR C+G Q  EL C  C K 
Sbjct  1    CKVCGEWKPLSAFSKKQLKKLRGKIASPG------NSGIRCRECTGGQVTELTCEPCGKT  54

Query  92   KSLDEFARAQRQNRDAARCMNCVQ  115
            K LD F+++QR+N D ARC +CVQ
Sbjct  55   KPLDAFSKSQRRNPDTARCKDCVQ  78



Lambda      K        H        a         alpha
   0.313    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00012517

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00012519

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432862 pfam12898, Stc1, Stc1 domain. The domain contains 8 co...  98.9    7e-27


>CDD:432862 pfam12898, Stc1, Stc1 domain.  The domain contains 8 conserved 
cysteines that may bind to zinc. In S. pombe this protein 
acts as a protein linker which links the chromatin modifying 
CLRC complex to RNAi by tethering it to the RITS complex. The 
region is reported as a LIM domain here, but has a slightly 
different arrangement of its CxxC pairs from the Pfam LIM 
domain pfam00412, hence why it is not part of that family. 
The tandem zinc-finger structure could mediate protein-protein 
interactions.
Length=78

 Score = 98.9 bits (247),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 35/84 (42%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query  32   CGTCSKIRSSSNYSNRQLEALRHAILSHGVNVALTKNNAKCRICSGNQTVELKCCICDKI  91
            C  C + +  S +S +QL+ LR  I S G       +  +CR C+G Q  EL C  C K 
Sbjct  1    CKVCGEWKPLSAFSKKQLKKLRGKIASPG------NSGIRCRECTGGQVTELTCEPCGKT  54

Query  92   KSLDEFARAQRQNRDAARCMNCVQ  115
            K LD F+++QR+N D ARC +CVQ
Sbjct  55   KPLDAFSKSQRRNPDTARCKDCVQ  78



Lambda      K        H        a         alpha
   0.314    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00012518

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00012521

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00012522

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00012523

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0922    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00012524

Length=687


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 876025260


Query= TCONS_00012525

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00012526

Length=311


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00012527

Length=687


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 876025260


Query= TCONS_00018362

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.143    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00012529

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.143    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00012530

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00012532

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00018363

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  219     6e-68
CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concana...  89.6    5e-21


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 219 bits (559),  Expect = 6e-68, Method: Composition-based stats.
 Identities = 108/295 (37%), Positives = 150/295 (51%), Gaps = 28/295 (9%)

Query  29   YTNPLFPGWHSDPSCAYVAEQDTFFCVTSTFIAFPGLPLYASRDLQNWKLASNIFNRPSQ  88
            Y NP+ PG++ DPS   V   D ++  TS+F  FPG+P++ S+DL NWKL   +  R SQ
Sbjct  1    YRNPVLPGFYPDPSILRV--GDDYYLTTSSFEWFPGIPIFHSKDLVNWKLVGPVLVRRSQ  58

Query  89   IPDLRVTDGQQSG-IYAPTLRYHEGQFYLIVSYLGPQTKGLLFTSSDPYDDAAWSDP--L  145
                    G+ S   +AP + YH+G++YL  + +      +  T+  P  D  WSDP  L
Sbjct  59   ------LSGRGSNASWAPDISYHDGKYYLYYTAVAHGI-FVA-TADSP--DGPWSDPGKL  108

Query  146  EFAVHGIDPDIFWDHDGTVYV------TSAEDQMIKQYTLDLKTGA-IGPVDYL----WN  194
            +    GIDP +F D DG  Y+             I    LD      +GPV  L      
Sbjct  109  KSGGGGIDPSLFHDDDGKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVGPVTKLIYPGTR  168

Query  195  GTGGVWPEGPHIYKRDGYYYLMIAEGGTELGHSETMARSRTRTGPWEPYPHNPLLSNKGT  254
              GG   EGPH+YKR+GYYYL  A GGT   ++  +ARSR+  GP+E +P NP+L+++  
Sbjct  169  WVGGKVTEGPHLYKRNGYYYLTYAAGGTGGPYAVGVARSRSPLGPYEWHPGNPILTSRSP  228

Query  255  SEYFQTVGHADLFQDGNGNWWAVALSTRSGPAWKNYPMGRETVLAPAAWEKGEWP  309
                   GHA L +  +G WW V  + R G     Y +GRET + P  W    WP
Sbjct  229  ENPIYGPGHASLVETPDGEWWIVYHAGRPGDGG--YGLGRETRIQPVEWRADGWP  281


>CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concanavalin A-like 
domain.  This domain is found to the C-terminus of the 
pfam04616 domain. This domain adopts a concanavalin A-like 
fold.
Length=203

 Score = 89.6 bits (223),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 76/193 (39%), Gaps = 19/193 (10%)

Query  342  KVDFRPGSKIPAHFQYWRYPKTEDFTVSPRGHPNTLRLTPSFYNLTGTADFKPDDGLSLV  401
            + DF    K+   +Q+ R P+ E +  S    P  LRL        G          SL+
Sbjct  1    RDDFD-SPKLGLQWQWLRNPRDESW-YSLTERPGYLRLY-------GRESLSSLFAPSLL  51

Query  402  MRKQTDTLFTYTVDVSFDPKVADEEAGVTVFLTQQQHIDLGIVLLQTTEGLSLSFRFRVE  461
             R+Q    FT T  + F+P+   EEAG+ V+  +  H  LG+      E      R    
Sbjct  52   ARRQQHFSFTATTKLEFEPQKEGEEAGLVVYYNEYNHYYLGVTK---DEDGGRVLRLVRC  108

Query  462  GRGNYEGPLPEATVPVPKEWCGQTIRLEIQAVSDTEYVFAAAPARHPAQRQIISRANSLI  521
              G     L E  VP+  E   +T+ L ++   DT     +   +    + I    ++ I
Sbjct  109  DNGELTEELAEEEVPLGGEV--KTVYLRVEVDGDTYQFSYSYDGKD--WKTIGPELDASI  164

Query  522  VSGDT---GRFTG  531
            +S +    G FTG
Sbjct  165  LSDEYAAGGGFTG  177



Lambda      K        H        a         alpha
   0.318    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00018364

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  216     8e-67
CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concana...  115     4e-30


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 216 bits (553),  Expect = 8e-67, Method: Composition-based stats.
 Identities = 108/295 (37%), Positives = 150/295 (51%), Gaps = 28/295 (9%)

Query  29   YTNPLFPGWHSDPSCAYVAEQDTFFCVTSTFIAFPGLPLYASRDLQNWKLASNIFNRPSQ  88
            Y NP+ PG++ DPS   V   D ++  TS+F  FPG+P++ S+DL NWKL   +  R SQ
Sbjct  1    YRNPVLPGFYPDPSILRV--GDDYYLTTSSFEWFPGIPIFHSKDLVNWKLVGPVLVRRSQ  58

Query  89   IPDLRVTDGQQSG-IYAPTLRYHEGQFYLIVSYLGPQTKGLLFTSSDPYDDAAWSDP--L  145
                    G+ S   +AP + YH+G++YL  + +      +  T+  P  D  WSDP  L
Sbjct  59   ------LSGRGSNASWAPDISYHDGKYYLYYTAVAHGI-FVA-TADSP--DGPWSDPGKL  108

Query  146  EFAVHGIDPDIFWDHDGTVYV------TSAEDQMIKQYTLDLKTGA-IGPVDYL----WN  194
            +    GIDP +F D DG  Y+             I    LD      +GPV  L      
Sbjct  109  KSGGGGIDPSLFHDDDGKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVGPVTKLIYPGTR  168

Query  195  GTGGVWPEGPHIYKRDGYYYLMIAEGGTELGHSETMARSRTRTGPWEPYPHNPLLSNKGT  254
              GG   EGPH+YKR+GYYYL  A GGT   ++  +ARSR+  GP+E +P NP+L+++  
Sbjct  169  WVGGKVTEGPHLYKRNGYYYLTYAAGGTGGPYAVGVARSRSPLGPYEWHPGNPILTSRSP  228

Query  255  SEYFQTVGHADLFQDGNGNWWAVALSTRSGPAWKNYPMGRETVLAPAAWEKGEWP  309
                   GHA L +  +G WW V  + R G     Y +GRET + P  W    WP
Sbjct  229  ENPIYGPGHASLVETPDGEWWIVYHAGRPGDGG--YGLGRETRIQPVEWRADGWP  281


>CDD:436093 pfam17851, GH43_C2, Beta xylosidase C-terminal Concanavalin A-like 
domain.  This domain is found to the C-terminus of the 
pfam04616 domain. This domain adopts a concanavalin A-like 
fold.
Length=203

 Score = 115 bits (290),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 90/219 (41%), Gaps = 19/219 (9%)

Query  342  KVDFRPGSKIPAHFQYWRYPKTEDFTVSPRGHPNTLRLTPSFYNLTGTADFKPDDGLSLV  401
            + DF    K+   +Q+ R P+ E +  S    P  LRL        G          SL+
Sbjct  1    RDDFD-SPKLGLQWQWLRNPRDESW-YSLTERPGYLRLY-------GRESLSSLFAPSLL  51

Query  402  MRKQTDTLFTYTVDVSFDPKVADEEAGVTVFLTQQQHIDLGIVLLQTTEGLSLSFRFRVE  461
             R+Q    FT T  + F+P+   EEAG+ V+  +  H  LG+      E      R    
Sbjct  52   ARRQQHFSFTATTKLEFEPQKEGEEAGLVVYYNEYNHYYLGVTK---DEDGGRVLRLVRC  108

Query  462  GRGNYEGPLPEATVPVPKEWCGQTIRLEIQAVSDTEYVFAAAPARHPAQRQIISRANSLI  521
              G     L E  VP+  E   +T+ L ++   DT     +   +    + I    ++ I
Sbjct  109  DNGELTEELAEEEVPLGGEV--KTVYLRVEVDGDTYQFSYSYDGKD--WKTIGPELDASI  164

Query  522  VSGDT---GRFTGSLVGVYATSNGGAGSTPAYISRWRYE  557
            +S +    G FTG+ VG+YAT NG   S  A    + YE
Sbjct  165  LSDEYAAGGGFTGAFVGLYATDNGKGSSGYADFDWFEYE  203



Lambda      K        H        a         alpha
   0.318    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00012535

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.120    0.310    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00012536

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  95.6    1e-25


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 95.6 bits (239),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 47/65 (72%), Gaps = 2/65 (3%)

Query  34  DLYEVLGVKEDATQDEIKSAYRKLALKHHPDKAPADQKDQAHSKFQQIAFAYAILSDEKR  93
           D YE+LGV  DA+ +EIK AYRKLALK+HPDK P D   +A  KF++I  AY +LSD ++
Sbjct  1   DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDP--EAEEKFKEINEAYEVLSDPEK  58

Query  94  RRRFD  98
           R  +D
Sbjct  59  RAIYD  63



Lambda      K        H        a         alpha
   0.307    0.124    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00012537

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425765 pfam00582, Usp, Universal stress protein family. The u...  67.0    2e-14


>CDD:425765 pfam00582, Usp, Universal stress protein family.  The universal 
stress protein UspA is a small cytoplasmic bacterial protein 
whose expression is enhanced when the cell is exposed to 
stress agents. UspA enhances the rate of cell survival during 
prolonged exposure to such conditions, and may provide a 
general "stress endurance" activity. The crystal structure of 
Haemophilus influenzae UspA reveals an alpha/beta fold similar 
to that of the Methanococcus jannaschii MJ0577 protein, 
which binds ATP, though UspA lacks ATP-binding activity.
Length=137

 Score = 67.0 bits (164),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 3/104 (3%)

Query  172  TDSKPSSVDARGVPKGQQERNRAVEIISQTCVRLLRKTLLQVRVAVEVIHCKSPKHMITE  231
                 ++  A    + ++      E  +           ++V V V V     P   I E
Sbjct  37   PPPSGAASLADESAEEEELELELAEAEALAAAAAAEAGGVKVEVVVVV---GDPAEEILE  93

Query  232  AIDGLEPTLVIVGARGRSALKGVLLGSFSNYLVMNSSVPVMVAR  275
              +  +  L+++G+RGRS L  +LLGS + Y++ ++  PV+V R
Sbjct  94   VAEEEDADLIVMGSRGRSGLSRLLLGSVAEYVLRHAPCPVLVVR  137



Lambda      K        H        a         alpha
   0.315    0.130    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00012538

Length=656


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 830306770


Query= TCONS_00018365

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00012539

Length=316
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425765 pfam00582, Usp, Universal stress protein family. The u...  67.0    3e-14


>CDD:425765 pfam00582, Usp, Universal stress protein family.  The universal 
stress protein UspA is a small cytoplasmic bacterial protein 
whose expression is enhanced when the cell is exposed to 
stress agents. UspA enhances the rate of cell survival during 
prolonged exposure to such conditions, and may provide a 
general "stress endurance" activity. The crystal structure of 
Haemophilus influenzae UspA reveals an alpha/beta fold similar 
to that of the Methanococcus jannaschii MJ0577 protein, 
which binds ATP, though UspA lacks ATP-binding activity.
Length=137

 Score = 67.0 bits (164),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 3/104 (3%)

Query  181  TDSKPSSVDARGVPKGQQERNRAVEIISQTCVRLLRKTLLQVRVAVEVIHCKSPKHMITE  240
                 ++  A    + ++      E  +           ++V V V V     P   I E
Sbjct  37   PPPSGAASLADESAEEEELELELAEAEALAAAAAAEAGGVKVEVVVVV---GDPAEEILE  93

Query  241  AIDGLEPTLVIVGARGRSALKGVLLGSFSNYLVMNSSVPVMVAR  284
              +  +  L+++G+RGRS L  +LLGS + Y++ ++  PV+V R
Sbjct  94   VAEEEDADLIVMGSRGRSGLSRLLLGSVAEYVLRHAPCPVLVVR  137



Lambda      K        H        a         alpha
   0.316    0.131    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00012540

Length=710
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425765 pfam00582, Usp, Universal stress protein family. The u...  70.9    4e-15


>CDD:425765 pfam00582, Usp, Universal stress protein family.  The universal 
stress protein UspA is a small cytoplasmic bacterial protein 
whose expression is enhanced when the cell is exposed to 
stress agents. UspA enhances the rate of cell survival during 
prolonged exposure to such conditions, and may provide a 
general "stress endurance" activity. The crystal structure of 
Haemophilus influenzae UspA reveals an alpha/beta fold similar 
to that of the Methanococcus jannaschii MJ0577 protein, 
which binds ATP, though UspA lacks ATP-binding activity.
Length=137

 Score = 70.9 bits (174),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 63/197 (32%), Gaps = 61/197 (31%)

Query  482  LVATDLSEESVYALEWTIGTILRDGDTMFAVCAVNEELGIPFGSSVQIGEGAQAMQDSAA  541
            LVA D SEES  ALEW        G  +  +  ++                         
Sbjct  2    LVAVDGSEESKRALEWAAELAKARGAELILLHVIDPP-----------------------  38

Query  542  IVGSQTEETVFKSSNDSITSNLPRALLGRLGQGTDSKPSSVDARGVPKGQQERNRAVEII  601
                                                  ++  A    + ++      E  
Sbjct  39   -----------------------------------PSGAASLADESAEEEELELELAEAE  63

Query  602  SQTCVRLLRKTLLQVRVAVEVIHCKSPKHMITEAIDGLEPTLVIVGARGRSALKGVLLGS  661
            +           ++V V V V     P   I E  +  +  L+++G+RGRS L  +LLGS
Sbjct  64   ALAAAAAAEAGGVKVEVVVVV---GDPAEEILEVAEEEDADLIVMGSRGRSGLSRLLLGS  120

Query  662  FSNYLVMNSSVPVMVAR  678
             + Y++ ++  PV+V R
Sbjct  121  VAEYVLRHAPCPVLVVR  137



Lambda      K        H        a         alpha
   0.308    0.125    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 909945430


Query= TCONS_00018366

Length=688
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425765 pfam00582, Usp, Universal stress protein family. The u...  65.9    2e-13


>CDD:425765 pfam00582, Usp, Universal stress protein family.  The universal 
stress protein UspA is a small cytoplasmic bacterial protein 
whose expression is enhanced when the cell is exposed to 
stress agents. UspA enhances the rate of cell survival during 
prolonged exposure to such conditions, and may provide a 
general "stress endurance" activity. The crystal structure of 
Haemophilus influenzae UspA reveals an alpha/beta fold similar 
to that of the Methanococcus jannaschii MJ0577 protein, 
which binds ATP, though UspA lacks ATP-binding activity.
Length=137

 Score = 65.9 bits (161),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 39/200 (20%), Positives = 63/200 (32%), Gaps = 64/200 (32%)

Query  482  LVATDLSEESVYALEWTIGTILRDGDTMFAVCAVNEELGIPFGSSVQIGEGAQAMQDSAA  541
            LVA D SEES  ALEW        G  +  +  ++                         
Sbjct  2    LVAVDGSEESKRALEWAAELAKARGAELILLHVIDPP-----------------------  38

Query  542  IVGSQTEETVFKSSNDSITSNLPRALLGRLGQGTDSKPSSVDARGVPKGQQERNRAVEII  601
                                                  ++  A    + ++      E  
Sbjct  39   -----------------------------------PSGAASLADESAEEEELELELAEAE  63

Query  602  SQTCVRLLRKTLLQVRVAVEVIHCKSPKHMITEAIDGLEPTLVIVGARGRSALKGLSSVL  661
            +           ++V V V V     P   I E  +  +  L+++G+RGRS L  L   L
Sbjct  64   ALAAAAAAEAGGVKVEVVVVV---GDPAEEILEVAEEEDADLIVMGSRGRSGLSRL---L  117

Query  662  LGSFSNYLVMNSSVPVMVAR  681
            LGS + Y++ ++  PV+V R
Sbjct  118  LGSVAEYVLRHAPCPVLVVR  137



Lambda      K        H        a         alpha
   0.308    0.125    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 877500050


Query= TCONS_00018367

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425417 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family...  324     2e-110
CDD:427029 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta fami...  58.7    1e-11 


>CDD:425417 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding 
domain.  This entry includes the ATP synthase 
alpha and beta subunits, the ATP synthase associated with flagella 
and the termination factor Rho.
Length=212

 Score = 324 bits (834),  Expect = 2e-110, Method: Composition-based stats.
 Identities = 93/228 (41%), Positives = 133/228 (58%), Gaps = 16/228 (7%)

Query  145  GISAIDTMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKPTKDVHDGHEENFSIVF  204
            GI AID +  I RGQ+I IF  +G+    +A  I RQA      + DV         +V+
Sbjct  1    GIRAIDGLLPIGRGQRIGIFGGSGVGKTVLAGMIARQA------SADV---------VVY  45

Query  205  AAMGVNMETARFFTRDFEENGSMERVTLFLNLANDPTIERIITPRLALTTAEYYAYQLEK  264
            A +G      R F  +   +G+++R  + +  +++P + R   P  ALT AEY+  Q  K
Sbjct  46   ALIGERGREVREFIEELLGSGALKRTVVVVATSDEPPLARYRAPYTALTIAEYFRDQ-GK  104

Query  265  HVLVIMTDLSAYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQI  324
             VL+IM  L+ + +ALRE+S A  E PGR GYP  +++ L+ + ERAGRV+G+ GSIT +
Sbjct  105  DVLLIMDSLTRFAEALREISLALGEPPGREGYPPSVFSLLARLLERAGRVKGKGGSITAL  164

Query  325  PILTMPNDDITHPIPDLTGYITEGQIFVDRQLYNKGVSPPINVLPSLS  372
            P + +P DDIT PIPD T  I +GQI + R L  KG  P I+VL S+S
Sbjct  165  PTVLVPGDDITDPIPDNTRSILDGQIVLSRDLAEKGHYPAIDVLASVS  212


>CDD:427029 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta family, beta-barrel 
domain.  This family includes the ATP synthase alpha 
and beta subunits the ATP synthase associated with flagella.
Length=69

 Score = 58.7 bits (143),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 20/67 (30%), Positives = 34/67 (51%), Gaps = 4/67 (6%)

Query  25  INGPLVFLDNVKFPRYNEIVSLTLP---DGTERSGQVLEARGNRAIVQVFEGTSGIDVKK  81
           + GP+V ++         + +L +     G+   G+VL   G++  VQVF GTSG+    
Sbjct  4   VIGPVVDVEFGIGRLPGLLNALEVELVEFGSLVLGEVLNLGGDKVRVQVFGGTSGLSR-G  62

Query  82  TKVEFTG  88
            +V+ TG
Sbjct  63  DEVKRTG  69



Lambda      K        H        a         alpha
   0.317    0.136    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00012541

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425765 pfam00582, Usp, Universal stress protein family. The u...  67.0    2e-14


>CDD:425765 pfam00582, Usp, Universal stress protein family.  The universal 
stress protein UspA is a small cytoplasmic bacterial protein 
whose expression is enhanced when the cell is exposed to 
stress agents. UspA enhances the rate of cell survival during 
prolonged exposure to such conditions, and may provide a 
general "stress endurance" activity. The crystal structure of 
Haemophilus influenzae UspA reveals an alpha/beta fold similar 
to that of the Methanococcus jannaschii MJ0577 protein, 
which binds ATP, though UspA lacks ATP-binding activity.
Length=137

 Score = 67.0 bits (164),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 3/104 (3%)

Query  172  TDSKPSSVDARGVPKGQQERNRAVEIISQTCVRLLRKTLLQVRVAVEVIHCKSPKHMITE  231
                 ++  A    + ++      E  +           ++V V V V     P   I E
Sbjct  37   PPPSGAASLADESAEEEELELELAEAEALAAAAAAEAGGVKVEVVVVV---GDPAEEILE  93

Query  232  AIDGLEPTLVIVGARGRSALKGVLLGSFSNYLVMNSSVPVMVAR  275
              +  +  L+++G+RGRS L  +LLGS + Y++ ++  PV+V R
Sbjct  94   VAEEEDADLIVMGSRGRSGLSRLLLGSVAEYVLRHAPCPVLVVR  137



Lambda      K        H        a         alpha
   0.315    0.130    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00012542

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.121    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00018368

Length=708
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425765 pfam00582, Usp, Universal stress protein family. The u...  66.3    1e-13


>CDD:425765 pfam00582, Usp, Universal stress protein family.  The universal 
stress protein UspA is a small cytoplasmic bacterial protein 
whose expression is enhanced when the cell is exposed to 
stress agents. UspA enhances the rate of cell survival during 
prolonged exposure to such conditions, and may provide a 
general "stress endurance" activity. The crystal structure of 
Haemophilus influenzae UspA reveals an alpha/beta fold similar 
to that of the Methanococcus jannaschii MJ0577 protein, 
which binds ATP, though UspA lacks ATP-binding activity.
Length=137

 Score = 66.3 bits (162),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 63/198 (32%), Gaps = 62/198 (31%)

Query  482  LVATDLSEESVYALEWTIGTILRDGDTMFAVCAVNEELGIPFGSSVQIGEGAQAMQDSAA  541
            LVA D SEES  ALEW        G  +  +  ++                         
Sbjct  2    LVAVDGSEESKRALEWAAELAKARGAELILLHVIDPP-----------------------  38

Query  542  IVGSQTEETVFKSSNDSITSNLPRALLGRLGQGTDSKPSSVDARGVPKGQQERNRAVEII  601
                                                  ++  A    + ++      E  
Sbjct  39   -----------------------------------PSGAASLADESAEEEELELELAEAE  63

Query  602  SQTCVRLLRKTLLQVRVAVEVIHCKSPKHMITEAIDGLEPTLVIVGARGRSALKGSVLLG  661
            +           ++V V V V     P   I E  +  +  L+++G+RGRS L   +LLG
Sbjct  64   ALAAAAAAEAGGVKVEVVVVV---GDPAEEILEVAEEEDADLIVMGSRGRSGLSR-LLLG  119

Query  662  SFSNYLVMNSSVPVMVAR  679
            S + Y++ ++  PV+V R
Sbjct  120  SVAEYVLRHAPCPVLVVR  137



Lambda      K        H        a         alpha
   0.308    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906995850


Query= TCONS_00018369

Length=575
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  150     6e-42
CDD:395227 pfam00290, Trp_syntA, Tryptophan synthase alpha chain      125     4e-33


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 150 bits (382),  Expect = 6e-42, Method: Composition-based stats.
 Identities = 83/329 (25%), Positives = 127/329 (39%), Gaps = 45/329 (14%)

Query  227  RPSSLHLANRLTEYVGGANIWLKREDLNHTGSHKINNALGQILIARRLGKTRIIAETGAG  286
             P+ L    RL++ +G  +++LK E LN TGS K   AL  +L  +     + + E  +G
Sbjct  6    GPTPLVRLPRLSKELGV-DVYLKLESLNPTGSFKDRGALNLLLRLKEGEGGKTVVEASSG  64

Query  287  QHGVATATVCAKFGMKCVVYMGAEDVRRQALNVFRMKLLGASVVAVDAGSRTLRDAVNEA  346
             HG A A   A+ G+K  + +  +        +  M+ LGA VV V         A  E 
Sbjct  65   NHGRALAAAAARLGLKVTIVVPEDAP---PGKLLLMRALGAEVVLVGGDYDEAVAAAREL  121

Query  347  LRAWVVDLDTTHYIIGSAIGPHPF--PTIVRTFQSVIGEETKQQMMEAIGKLPDAVVACV  404
                             A   + +  P  +      IG E    ++E +G  PDAVV  V
Sbjct  122  AAEG-----------PGAYYINQYDNPLNIEG-YGTIGLE----ILEQLGGDPDAVVVPV  165

Query  405  GGGSNAVGMFYPF-AKDTSVKLVGVEAGGDGIDTNRHSATLTGGSKGVLHGVRTYVLQDE  463
            GGG    G+          V+++GVE  G        +  L                   
Sbjct  166  GGGGLIAGIARGLKELGPDVRVIGVEPEG--------APALARSLAA-----------GR  206

Query  464  HGQISETHSISAGLDYPGV-GPELSSWKDSDRARFIAATDAEALIGFRTLAQTEGIIPAL  522
               +    +I+ GL      G       D      +  +D EAL   R LA+ EGI+   
Sbjct  207  PVPVPVADTIADGLGVGDEPGALALDLLDEYVGEVVTVSDEEALEAMRLLARREGIVVEP  266

Query  523  ESSHAVWGA-MELAKSMKTGD-IVLNLSG  549
             S+ A+    + LA  +K GD +V+ L+G
Sbjct  267  SSAAALAALKLALAGELKGGDRVVVVLTG  295


>CDD:395227 pfam00290, Trp_syntA, Tryptophan synthase alpha chain.  
Length=258

 Score = 125 bits (316),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 68/108 (63%), Gaps = 1/108 (1%)

Query  2    SYVPLIAPATSEARMKLLCKIADSFIYVVSRMGVTGATGKLSSNLPELLKRVHQWSGNVP  61
              V L+AP TS+ R+K + + A+ F+Y+VSR GVTGA   +++ + EL++R+ +++  VP
Sbjct  142  ELVFLVAPTTSDERLKTVVEQAEGFVYLVSRAGVTGAENAVNAQVDELVERLKKYT-AVP  200

Query  62   AALGFGVSTREHFLSVQELAEGVVIGSQIITVLGQAPAGQAAKHAEEY  109
             A+GFG+ST EH       A+GV++GS ++ ++ +A  G     A   
Sbjct  201  VAVGFGISTPEHVKQAAAGADGVIVGSALVRIIEEAADGPEQGLARLE  248



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 721808724


Query= TCONS_00012544

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425417 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family...  322     9e-111
CDD:427029 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta fami...  56.8    3e-11 


>CDD:425417 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding 
domain.  This entry includes the ATP synthase 
alpha and beta subunits, the ATP synthase associated with flagella 
and the termination factor Rho.
Length=212

 Score = 322 bits (828),  Expect = 9e-111, Method: Composition-based stats.
 Identities = 93/228 (41%), Positives = 133/228 (58%), Gaps = 16/228 (7%)

Query  145  GISAIDTMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKPTKDVHDGHEENFSIVF  204
            GI AID +  I RGQ+I IF  +G+    +A  I RQA      + DV         +V+
Sbjct  1    GIRAIDGLLPIGRGQRIGIFGGSGVGKTVLAGMIARQA------SADV---------VVY  45

Query  205  AAMGVNMETARFFTRDFEENGSMERVTLFLNLANDPTIERIITPRLALTTAEYYAYQLEK  264
            A +G      R F  +   +G+++R  + +  +++P + R   P  ALT AEY+  Q  K
Sbjct  46   ALIGERGREVREFIEELLGSGALKRTVVVVATSDEPPLARYRAPYTALTIAEYFRDQ-GK  104

Query  265  HVLVIMTDLSAYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQI  324
             VL+IM  L+ + +ALRE+S A  E PGR GYP  +++ L+ + ERAGRV+G+ GSIT +
Sbjct  105  DVLLIMDSLTRFAEALREISLALGEPPGREGYPPSVFSLLARLLERAGRVKGKGGSITAL  164

Query  325  PILTMPNDDITHPIPDLTGYITEGQIFVDRQLYNKGVSPPINVLPSLS  372
            P + +P DDIT PIPD T  I +GQI + R L  KG  P I+VL S+S
Sbjct  165  PTVLVPGDDITDPIPDNTRSILDGQIVLSRDLAEKGHYPAIDVLASVS  212


>CDD:427029 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta family, beta-barrel 
domain.  This family includes the ATP synthase alpha 
and beta subunits the ATP synthase associated with flagella.
Length=69

 Score = 56.8 bits (138),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 20/67 (30%), Positives = 34/67 (51%), Gaps = 4/67 (6%)

Query  25  INGPLVFLDNVKFPRYNEIVSLTLP---DGTERSGQVLEARGNRAIVQVFEGTSGIDVKK  81
           + GP+V ++         + +L +     G+   G+VL   G++  VQVF GTSG+    
Sbjct  4   VIGPVVDVEFGIGRLPGLLNALEVELVEFGSLVLGEVLNLGGDKVRVQVFGGTSGLSR-G  62

Query  82  TKVEFTG  88
            +V+ TG
Sbjct  63  DEVKRTG  69



Lambda      K        H        a         alpha
   0.317    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00012545

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425417 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family...  311     5e-106
CDD:427029 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta fami...  57.2    2e-11 


>CDD:425417 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding 
domain.  This entry includes the ATP synthase 
alpha and beta subunits, the ATP synthase associated with flagella 
and the termination factor Rho.
Length=212

 Score = 311 bits (800),  Expect = 5e-106, Method: Composition-based stats.
 Identities = 93/250 (37%), Positives = 133/250 (53%), Gaps = 38/250 (15%)

Query  145  GISAIDTMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKPTKDVHDGHEENFSIVF  204
            GI AID +  I RGQ+I IF  +G+    +A  I RQA      + DV         +V+
Sbjct  1    GIRAIDGLLPIGRGQRIGIFGGSGVGKTVLAGMIARQA------SADV---------VVY  45

Query  205  AAMGVNMETARFFTRDFEENGSMERVTLFLNLANDPTIERIITPRLALTTAEYYAYQLEK  264
            A +G      R F  +   +G+++R  + +  +++P + R   P  ALT AEY+  Q  K
Sbjct  46   ALIGERGREVREFIEELLGSGALKRTVVVVATSDEPPLARYRAPYTALTIAEYFRDQ-GK  104

Query  265  HVLVIMTDLSAYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQI  324
             VL+IM  L+ + +ALRE+S A  E PGR GYP  +++ L+ + ERAGRV+G+ GSIT +
Sbjct  105  DVLLIMDSLTRFAEALREISLALGEPPGREGYPPSVFSLLARLLERAGRVKGKGGSITAL  164

Query  325  PILTMPNDGKQICEQILLRSLSSSVLTVSLDITHPIPDLTGYITEGQIFVDRQLYNKGVS  384
            P + +P D                      DIT PIPD T  I +GQI + R L  KG  
Sbjct  165  PTVLVPGD----------------------DITDPIPDNTRSILDGQIVLSRDLAEKGHY  202

Query  385  PPINVLPSLS  394
            P I+VL S+S
Sbjct  203  PAIDVLASVS  212


>CDD:427029 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta family, beta-barrel 
domain.  This family includes the ATP synthase alpha 
and beta subunits the ATP synthase associated with flagella.
Length=69

 Score = 57.2 bits (139),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 20/67 (30%), Positives = 34/67 (51%), Gaps = 4/67 (6%)

Query  25  INGPLVFLDNVKFPRYNEIVSLTLP---DGTERSGQVLEARGNRAIVQVFEGTSGIDVKK  81
           + GP+V ++         + +L +     G+   G+VL   G++  VQVF GTSG+    
Sbjct  4   VIGPVVDVEFGIGRLPGLLNALEVELVEFGSLVLGEVLNLGGDKVRVQVFGGTSGLSR-G  62

Query  82  TKVEFTG  88
            +V+ TG
Sbjct  63  DEVKRTG  69



Lambda      K        H        a         alpha
   0.317    0.136    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00012546

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425417 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family...  323     3e-111
CDD:427029 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta fami...  57.6    2e-11 


>CDD:425417 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding 
domain.  This entry includes the ATP synthase 
alpha and beta subunits, the ATP synthase associated with flagella 
and the termination factor Rho.
Length=212

 Score = 323 bits (830),  Expect = 3e-111, Method: Composition-based stats.
 Identities = 93/228 (41%), Positives = 133/228 (58%), Gaps = 16/228 (7%)

Query  145  GISAIDTMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKPTKDVHDGHEENFSIVF  204
            GI AID +  I RGQ+I IF  +G+    +A  I RQA      + DV         +V+
Sbjct  1    GIRAIDGLLPIGRGQRIGIFGGSGVGKTVLAGMIARQA------SADV---------VVY  45

Query  205  AAMGVNMETARFFTRDFEENGSMERVTLFLNLANDPTIERIITPRLALTTAEYYAYQLEK  264
            A +G      R F  +   +G+++R  + +  +++P + R   P  ALT AEY+  Q  K
Sbjct  46   ALIGERGREVREFIEELLGSGALKRTVVVVATSDEPPLARYRAPYTALTIAEYFRDQ-GK  104

Query  265  HVLVIMTDLSAYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQI  324
             VL+IM  L+ + +ALRE+S A  E PGR GYP  +++ L+ + ERAGRV+G+ GSIT +
Sbjct  105  DVLLIMDSLTRFAEALREISLALGEPPGREGYPPSVFSLLARLLERAGRVKGKGGSITAL  164

Query  325  PILTMPNDDITHPIPDLTGYITEGQIFVDRQLYNKGVSPPINVLPSLS  372
            P + +P DDIT PIPD T  I +GQI + R L  KG  P I+VL S+S
Sbjct  165  PTVLVPGDDITDPIPDNTRSILDGQIVLSRDLAEKGHYPAIDVLASVS  212


>CDD:427029 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta family, beta-barrel 
domain.  This family includes the ATP synthase alpha 
and beta subunits the ATP synthase associated with flagella.
Length=69

 Score = 57.6 bits (140),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 20/67 (30%), Positives = 34/67 (51%), Gaps = 4/67 (6%)

Query  25  INGPLVFLDNVKFPRYNEIVSLTLP---DGTERSGQVLEARGNRAIVQVFEGTSGIDVKK  81
           + GP+V ++         + +L +     G+   G+VL   G++  VQVF GTSG+    
Sbjct  4   VIGPVVDVEFGIGRLPGLLNALEVELVEFGSLVLGEVLNLGGDKVRVQVFGGTSGLSR-G  62

Query  82  TKVEFTG  88
            +V+ TG
Sbjct  63  DEVKRTG  69



Lambda      K        H        a         alpha
   0.318    0.137    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0791    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00018370

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425417 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family...  324     2e-110
CDD:427029 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta fami...  58.7    1e-11 


>CDD:425417 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding 
domain.  This entry includes the ATP synthase 
alpha and beta subunits, the ATP synthase associated with flagella 
and the termination factor Rho.
Length=212

 Score = 324 bits (834),  Expect = 2e-110, Method: Composition-based stats.
 Identities = 93/228 (41%), Positives = 133/228 (58%), Gaps = 16/228 (7%)

Query  145  GISAIDTMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKPTKDVHDGHEENFSIVF  204
            GI AID +  I RGQ+I IF  +G+    +A  I RQA      + DV         +V+
Sbjct  1    GIRAIDGLLPIGRGQRIGIFGGSGVGKTVLAGMIARQA------SADV---------VVY  45

Query  205  AAMGVNMETARFFTRDFEENGSMERVTLFLNLANDPTIERIITPRLALTTAEYYAYQLEK  264
            A +G      R F  +   +G+++R  + +  +++P + R   P  ALT AEY+  Q  K
Sbjct  46   ALIGERGREVREFIEELLGSGALKRTVVVVATSDEPPLARYRAPYTALTIAEYFRDQ-GK  104

Query  265  HVLVIMTDLSAYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQI  324
             VL+IM  L+ + +ALRE+S A  E PGR GYP  +++ L+ + ERAGRV+G+ GSIT +
Sbjct  105  DVLLIMDSLTRFAEALREISLALGEPPGREGYPPSVFSLLARLLERAGRVKGKGGSITAL  164

Query  325  PILTMPNDDITHPIPDLTGYITEGQIFVDRQLYNKGVSPPINVLPSLS  372
            P + +P DDIT PIPD T  I +GQI + R L  KG  P I+VL S+S
Sbjct  165  PTVLVPGDDITDPIPDNTRSILDGQIVLSRDLAEKGHYPAIDVLASVS  212


>CDD:427029 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta family, beta-barrel 
domain.  This family includes the ATP synthase alpha 
and beta subunits the ATP synthase associated with flagella.
Length=69

 Score = 58.7 bits (143),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 20/67 (30%), Positives = 34/67 (51%), Gaps = 4/67 (6%)

Query  25  INGPLVFLDNVKFPRYNEIVSLTLP---DGTERSGQVLEARGNRAIVQVFEGTSGIDVKK  81
           + GP+V ++         + +L +     G+   G+VL   G++  VQVF GTSG+    
Sbjct  4   VIGPVVDVEFGIGRLPGLLNALEVELVEFGSLVLGEVLNLGGDKVRVQVFGGTSGLSR-G  62

Query  82  TKVEFTG  88
            +V+ TG
Sbjct  63  DEVKRTG  69



Lambda      K        H        a         alpha
   0.317    0.136    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00018371

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425417 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family...  132     2e-38
CDD:427029 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta fami...  57.2    1e-11


>CDD:425417 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding 
domain.  This entry includes the ATP synthase 
alpha and beta subunits, the ATP synthase associated with flagella 
and the termination factor Rho.
Length=212

 Score = 132 bits (334),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 37/117 (32%), Positives = 57/117 (49%), Gaps = 15/117 (13%)

Query  145  GISAIDTMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKPTKDVHDGHEENFSIVF  204
            GI AID +  I RGQ+I IF  +G+    +A  I RQA      + DV         +V+
Sbjct  1    GIRAIDGLLPIGRGQRIGIFGGSGVGKTVLAGMIARQA------SADV---------VVY  45

Query  205  AAMGVNMETARFFTRDFEENGSMERVTLFLNLANDPTFERIITPRLALTTAEYYAYQ  261
            A +G      R F  +   +G+++R  + +  +++P   R   P  ALT AEY+  Q
Sbjct  46   ALIGERGREVREFIEELLGSGALKRTVVVVATSDEPPLARYRAPYTALTIAEYFRDQ  102


>CDD:427029 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta family, beta-barrel 
domain.  This family includes the ATP synthase alpha 
and beta subunits the ATP synthase associated with flagella.
Length=69

 Score = 57.2 bits (139),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 20/67 (30%), Positives = 34/67 (51%), Gaps = 4/67 (6%)

Query  25  INGPLVFLDNVKFPRYNEIVSLTLP---DGTERSGQVLEARGNRAIVQVFEGTSGIDVKK  81
           + GP+V ++         + +L +     G+   G+VL   G++  VQVF GTSG+    
Sbjct  4   VIGPVVDVEFGIGRLPGLLNALEVELVEFGSLVLGEVLNLGGDKVRVQVFGGTSGLSR-G  62

Query  82  TKVEFTG  88
            +V+ TG
Sbjct  63  DEVKRTG  69



Lambda      K        H        a         alpha
   0.318    0.137    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00012547

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425417 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family...  104     6e-28
CDD:427029 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta fami...  56.8    1e-11


>CDD:425417 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding 
domain.  This entry includes the ATP synthase 
alpha and beta subunits, the ATP synthase associated with flagella 
and the termination factor Rho.
Length=212

 Score = 104 bits (262),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 20/110 (18%)

Query  145  GISAIDTMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKPTKDVHDGHEENFSIVF  204
            GI AID +  I RGQ+I IF  +G+    +A  I RQA      + DV         +V+
Sbjct  1    GIRAIDGLLPIGRGQRIGIFGGSGVGKTVLAGMIARQA------SADV---------VVY  45

Query  205  AAMGVNMETARFFTRDFEENGSMERVTLFLNLANDPTYVCLCLLRLSALF  254
            A +G      R F  +   +G+++R  + +  +++P      L R  A +
Sbjct  46   ALIGERGREVREFIEELLGSGALKRTVVVVATSDEPP-----LARYRAPY  90


>CDD:427029 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta family, beta-barrel 
domain.  This family includes the ATP synthase alpha 
and beta subunits the ATP synthase associated with flagella.
Length=69

 Score = 56.8 bits (138),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 20/67 (30%), Positives = 34/67 (51%), Gaps = 4/67 (6%)

Query  25  INGPLVFLDNVKFPRYNEIVSLTLP---DGTERSGQVLEARGNRAIVQVFEGTSGIDVKK  81
           + GP+V ++         + +L +     G+   G+VL   G++  VQVF GTSG+    
Sbjct  4   VIGPVVDVEFGIGRLPGLLNALEVELVEFGSLVLGEVLNLGGDKVRVQVFGGTSGLSR-G  62

Query  82  TKVEFTG  88
            +V+ TG
Sbjct  63  DEVKRTG  69



Lambda      K        H        a         alpha
   0.319    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 277421980


Query= TCONS_00012548

Length=575
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  150     6e-42
CDD:395227 pfam00290, Trp_syntA, Tryptophan synthase alpha chain      125     4e-33


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 150 bits (382),  Expect = 6e-42, Method: Composition-based stats.
 Identities = 83/329 (25%), Positives = 127/329 (39%), Gaps = 45/329 (14%)

Query  227  RPSSLHLANRLTEYVGGANIWLKREDLNHTGSHKINNALGQILIARRLGKTRIIAETGAG  286
             P+ L    RL++ +G  +++LK E LN TGS K   AL  +L  +     + + E  +G
Sbjct  6    GPTPLVRLPRLSKELGV-DVYLKLESLNPTGSFKDRGALNLLLRLKEGEGGKTVVEASSG  64

Query  287  QHGVATATVCAKFGMKCVVYMGAEDVRRQALNVFRMKLLGASVVAVDAGSRTLRDAVNEA  346
             HG A A   A+ G+K  + +  +        +  M+ LGA VV V         A  E 
Sbjct  65   NHGRALAAAAARLGLKVTIVVPEDAP---PGKLLLMRALGAEVVLVGGDYDEAVAAAREL  121

Query  347  LRAWVVDLDTTHYIIGSAIGPHPF--PTIVRTFQSVIGEETKQQMMEAIGKLPDAVVACV  404
                             A   + +  P  +      IG E    ++E +G  PDAVV  V
Sbjct  122  AAEG-----------PGAYYINQYDNPLNIEG-YGTIGLE----ILEQLGGDPDAVVVPV  165

Query  405  GGGSNAVGMFYPF-AKDTSVKLVGVEAGGDGIDTNRHSATLTGGSKGVLHGVRTYVLQDE  463
            GGG    G+          V+++GVE  G        +  L                   
Sbjct  166  GGGGLIAGIARGLKELGPDVRVIGVEPEG--------APALARSLAA-----------GR  206

Query  464  HGQISETHSISAGLDYPGV-GPELSSWKDSDRARFIAATDAEALIGFRTLAQTEGIIPAL  522
               +    +I+ GL      G       D      +  +D EAL   R LA+ EGI+   
Sbjct  207  PVPVPVADTIADGLGVGDEPGALALDLLDEYVGEVVTVSDEEALEAMRLLARREGIVVEP  266

Query  523  ESSHAVWGA-MELAKSMKTGD-IVLNLSG  549
             S+ A+    + LA  +K GD +V+ L+G
Sbjct  267  SSAAALAALKLALAGELKGGDRVVVVLTG  295


>CDD:395227 pfam00290, Trp_syntA, Tryptophan synthase alpha chain.  
Length=258

 Score = 125 bits (316),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 68/108 (63%), Gaps = 1/108 (1%)

Query  2    SYVPLIAPATSEARMKLLCKIADSFIYVVSRMGVTGATGKLSSNLPELLKRVHQWSGNVP  61
              V L+AP TS+ R+K + + A+ F+Y+VSR GVTGA   +++ + EL++R+ +++  VP
Sbjct  142  ELVFLVAPTTSDERLKTVVEQAEGFVYLVSRAGVTGAENAVNAQVDELVERLKKYT-AVP  200

Query  62   AALGFGVSTREHFLSVQELAEGVVIGSQIITVLGQAPAGQAAKHAEEY  109
             A+GFG+ST EH       A+GV++GS ++ ++ +A  G     A   
Sbjct  201  VAVGFGISTPEHVKQAAAGADGVIVGSALVRIIEEAADGPEQGLARLE  248



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 721808724


Query= TCONS_00012549

Length=552


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 687436880


Query= TCONS_00018372

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  152     8e-44


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 152 bits (385),  Expect = 8e-44, Method: Composition-based stats.
 Identities = 83/329 (25%), Positives = 127/329 (39%), Gaps = 45/329 (14%)

Query  33   RPSSLHLANRLTEYVGGANIWLKREDLNHTGSHKINNALGQILIARRLGKTRIIAETGAG  92
             P+ L    RL++ +G  +++LK E LN TGS K   AL  +L  +     + + E  +G
Sbjct  6    GPTPLVRLPRLSKELGV-DVYLKLESLNPTGSFKDRGALNLLLRLKEGEGGKTVVEASSG  64

Query  93   QHGVATATVCAKFGMKCVVYMGAEDVRRQALNVFRMKLLGASVVAVDAGSRTLRDAVNEA  152
             HG A A   A+ G+K  + +  +        +  M+ LGA VV V         A  E 
Sbjct  65   NHGRALAAAAARLGLKVTIVVPEDAP---PGKLLLMRALGAEVVLVGGDYDEAVAAAREL  121

Query  153  LRAWVVDLDTTHYIIGSAIGPHPF--PTIVRTFQSVIGEETKQQMMEAIGKLPDAVVACV  210
                             A   + +  P  +      IG E    ++E +G  PDAVV  V
Sbjct  122  AAEG-----------PGAYYINQYDNPLNIEG-YGTIGLE----ILEQLGGDPDAVVVPV  165

Query  211  GGGSNAVGMFYPF-AKDTSVKLVGVEAGGDGIDTNRHSATLTGGSKGVLHGVRTYVLQDE  269
            GGG    G+          V+++GVE  G        +  L                   
Sbjct  166  GGGGLIAGIARGLKELGPDVRVIGVEPEG--------APALARSLAA-----------GR  206

Query  270  HGQISETHSISAGLDYPGV-GPELSSWKDSDRARFIAATDAEALIGFRTLAQTEGIIPAL  328
               +    +I+ GL      G       D      +  +D EAL   R LA+ EGI+   
Sbjct  207  PVPVPVADTIADGLGVGDEPGALALDLLDEYVGEVVTVSDEEALEAMRLLARREGIVVEP  266

Query  329  ESSHAVWGA-MELAKSMKTGD-IVLNLSG  355
             S+ A+    + LA  +K GD +V+ L+G
Sbjct  267  SSAAALAALKLALAGELKGGDRVVVVLTG  295



Lambda      K        H        a         alpha
   0.318    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00018373

Length=575
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  150     6e-42
CDD:395227 pfam00290, Trp_syntA, Tryptophan synthase alpha chain      125     4e-33


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 150 bits (382),  Expect = 6e-42, Method: Composition-based stats.
 Identities = 83/329 (25%), Positives = 127/329 (39%), Gaps = 45/329 (14%)

Query  227  RPSSLHLANRLTEYVGGANIWLKREDLNHTGSHKINNALGQILIARRLGKTRIIAETGAG  286
             P+ L    RL++ +G  +++LK E LN TGS K   AL  +L  +     + + E  +G
Sbjct  6    GPTPLVRLPRLSKELGV-DVYLKLESLNPTGSFKDRGALNLLLRLKEGEGGKTVVEASSG  64

Query  287  QHGVATATVCAKFGMKCVVYMGAEDVRRQALNVFRMKLLGASVVAVDAGSRTLRDAVNEA  346
             HG A A   A+ G+K  + +  +        +  M+ LGA VV V         A  E 
Sbjct  65   NHGRALAAAAARLGLKVTIVVPEDAP---PGKLLLMRALGAEVVLVGGDYDEAVAAAREL  121

Query  347  LRAWVVDLDTTHYIIGSAIGPHPF--PTIVRTFQSVIGEETKQQMMEAIGKLPDAVVACV  404
                             A   + +  P  +      IG E    ++E +G  PDAVV  V
Sbjct  122  AAEG-----------PGAYYINQYDNPLNIEG-YGTIGLE----ILEQLGGDPDAVVVPV  165

Query  405  GGGSNAVGMFYPF-AKDTSVKLVGVEAGGDGIDTNRHSATLTGGSKGVLHGVRTYVLQDE  463
            GGG    G+          V+++GVE  G        +  L                   
Sbjct  166  GGGGLIAGIARGLKELGPDVRVIGVEPEG--------APALARSLAA-----------GR  206

Query  464  HGQISETHSISAGLDYPGV-GPELSSWKDSDRARFIAATDAEALIGFRTLAQTEGIIPAL  522
               +    +I+ GL      G       D      +  +D EAL   R LA+ EGI+   
Sbjct  207  PVPVPVADTIADGLGVGDEPGALALDLLDEYVGEVVTVSDEEALEAMRLLARREGIVVEP  266

Query  523  ESSHAVWGA-MELAKSMKTGD-IVLNLSG  549
             S+ A+    + LA  +K GD +V+ L+G
Sbjct  267  SSAAALAALKLALAGELKGGDRVVVVLTG  295


>CDD:395227 pfam00290, Trp_syntA, Tryptophan synthase alpha chain.  
Length=258

 Score = 125 bits (316),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 68/108 (63%), Gaps = 1/108 (1%)

Query  2    SYVPLIAPATSEARMKLLCKIADSFIYVVSRMGVTGATGKLSSNLPELLKRVHQWSGNVP  61
              V L+AP TS+ R+K + + A+ F+Y+VSR GVTGA   +++ + EL++R+ +++  VP
Sbjct  142  ELVFLVAPTTSDERLKTVVEQAEGFVYLVSRAGVTGAENAVNAQVDELVERLKKYT-AVP  200

Query  62   AALGFGVSTREHFLSVQELAEGVVIGSQIITVLGQAPAGQAAKHAEEY  109
             A+GFG+ST EH       A+GV++GS ++ ++ +A  G     A   
Sbjct  201  VAVGFGISTPEHVKQAAAGADGVIVGSALVRIIEEAADGPEQGLARLE  248



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 721808724


Query= TCONS_00012550

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00018374

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00018375

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00012553

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00018377

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00012552

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00012556

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00012555

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00012554

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00012560

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00018378

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00012558

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00012559

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00018379

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00012561

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00018380

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00012563

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00012564

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00012565

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00018381

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00018382

Length=424


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00018383

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.121    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00012567

Length=1524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460496 pfam02213, GYF, GYF domain. The GYF domain is named be...  88.0    6e-22


>CDD:460496 pfam02213, GYF, GYF domain.  The GYF domain is named because 
of the presence of Gly-Tyr-Phe residues. The GYF domain is a 
proline-binding domain in CD2-binding protein.
Length=45

 Score = 88.0 bits (219),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 34/45 (76%), Gaps = 0/45 (0%)

Query  743  WIYRDPQGNIQGPWTGLEMHDWFKAGFFSPDLQIKKLEDPEFEPL  787
            W Y+DPQG +QGP++  EM +W+KAG+F  DL ++++ D EF PL
Sbjct  1    WEYKDPQGEVQGPFSSAEMQEWYKAGYFPDDLPVRRVGDTEFYPL  45



Lambda      K        H        a         alpha
   0.308    0.124    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1933670850


Query= TCONS_00012568

Length=1524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460496 pfam02213, GYF, GYF domain. The GYF domain is named be...  88.0    6e-22


>CDD:460496 pfam02213, GYF, GYF domain.  The GYF domain is named because 
of the presence of Gly-Tyr-Phe residues. The GYF domain is a 
proline-binding domain in CD2-binding protein.
Length=45

 Score = 88.0 bits (219),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 34/45 (76%), Gaps = 0/45 (0%)

Query  743  WIYRDPQGNIQGPWTGLEMHDWFKAGFFSPDLQIKKLEDPEFEPL  787
            W Y+DPQG +QGP++  EM +W+KAG+F  DL ++++ D EF PL
Sbjct  1    WEYKDPQGEVQGPFSSAEMQEWYKAGYFPDDLPVRRVGDTEFYPL  45



Lambda      K        H        a         alpha
   0.308    0.124    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1933670850


Query= TCONS_00012570

Length=1524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460496 pfam02213, GYF, GYF domain. The GYF domain is named be...  88.0    6e-22


>CDD:460496 pfam02213, GYF, GYF domain.  The GYF domain is named because 
of the presence of Gly-Tyr-Phe residues. The GYF domain is a 
proline-binding domain in CD2-binding protein.
Length=45

 Score = 88.0 bits (219),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 34/45 (76%), Gaps = 0/45 (0%)

Query  743  WIYRDPQGNIQGPWTGLEMHDWFKAGFFSPDLQIKKLEDPEFEPL  787
            W Y+DPQG +QGP++  EM +W+KAG+F  DL ++++ D EF PL
Sbjct  1    WEYKDPQGEVQGPFSSAEMQEWYKAGYFPDDLPVRRVGDTEFYPL  45



Lambda      K        H        a         alpha
   0.308    0.124    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1933670850


Query= TCONS_00012571

Length=837
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460496 pfam02213, GYF, GYF domain. The GYF domain is named be...  88.0    4e-22


>CDD:460496 pfam02213, GYF, GYF domain.  The GYF domain is named because 
of the presence of Gly-Tyr-Phe residues. The GYF domain is a 
proline-binding domain in CD2-binding protein.
Length=45

 Score = 88.0 bits (219),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 34/45 (76%), Gaps = 0/45 (0%)

Query  38  WIYRDPQGNIQGPWTGLEMHDWFKAGFFSPDLQIKKLEDPEFEPL  82
           W Y+DPQG +QGP++  EM +W+KAG+F  DL ++++ D EF PL
Sbjct  1   WEYKDPQGEVQGPFSSAEMQEWYKAGYFPDDLPVRRVGDTEFYPL  45



Lambda      K        H        a         alpha
   0.310    0.124    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0836    0.140     1.90     42.6     43.6 

Effective search space used: 1065151388


Query= TCONS_00012572

Length=378


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.121    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00018385

Length=249


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00012574

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429899 pfam08286, Spc24, Spc24 subunit of Ndc80. Spc24 is a c...  148     3e-47


>CDD:429899 pfam08286, Spc24, Spc24 subunit of Ndc80.  Spc24 is a component 
of the evolutionarily conserved kinetochore-associated Ndc80 
complex and is involved in chromosome segregation.
Length=107

 Score = 148 bits (377),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 67/114 (59%), Positives = 81/114 (71%), Gaps = 7/114 (6%)

Query  84   ELDTKKFRIAKAATELEIESERLEGELEMLKERLAELEAQGLEGDEATRREREADDATIL  143
            ELD +KFR+AK   +LE E ERLE EL  LKE L ELE QG+E DE   R    +D T+L
Sbjct  1    ELDNEKFRLAKELNDLESELERLESELAKLKEELEELEEQGVEVDEEDERS---EDETVL  57

Query  144  RLKIYRSLGIDIEADEAGNFSKAVIRNSRKGDVHVVNMDPKFSRFFYANYFWST  197
            +LK+YRSLGI++E D    ++KA+IRN  KGDVHVVN+DPK S FFYANY W  
Sbjct  58   KLKLYRSLGIELEYD----YNKALIRNKDKGDVHVVNLDPKLSDFFYANYLWDL  107



Lambda      K        H        a         alpha
   0.315    0.129    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00018386

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429899 pfam08286, Spc24, Spc24 subunit of Ndc80. Spc24 is a c...  73.0    3e-17


>CDD:429899 pfam08286, Spc24, Spc24 subunit of Ndc80.  Spc24 is a component 
of the evolutionarily conserved kinetochore-associated Ndc80 
complex and is involved in chromosome segregation.
Length=107

 Score = 73.0 bits (180),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 38/59 (64%), Gaps = 3/59 (5%)

Query  84   ELDTKKFRIAKAATELEIESERLEGELEMLKERLAELEAQGLEGDEATRREREADDATM  142
            ELD +KFR+AK   +LE E ERLE EL  LKE L ELE QG+E DE   R    +D T+
Sbjct  1    ELDNEKFRLAKELNDLESELERLESELAKLKEELEELEEQGVEVDEEDERS---EDETV  56



Lambda      K        H        a         alpha
   0.318    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00012575

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429899 pfam08286, Spc24, Spc24 subunit of Ndc80. Spc24 is a c...  148     3e-47


>CDD:429899 pfam08286, Spc24, Spc24 subunit of Ndc80.  Spc24 is a component 
of the evolutionarily conserved kinetochore-associated Ndc80 
complex and is involved in chromosome segregation.
Length=107

 Score = 148 bits (377),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 67/114 (59%), Positives = 81/114 (71%), Gaps = 7/114 (6%)

Query  84   ELDTKKFRIAKAATELEIESERLEGELEMLKERLAELEAQGLEGDEATRREREADDATIL  143
            ELD +KFR+AK   +LE E ERLE EL  LKE L ELE QG+E DE   R    +D T+L
Sbjct  1    ELDNEKFRLAKELNDLESELERLESELAKLKEELEELEEQGVEVDEEDERS---EDETVL  57

Query  144  RLKIYRSLGIDIEADEAGNFSKAVIRNSRKGDVHVVNMDPKFSRFFYANYFWST  197
            +LK+YRSLGI++E D    ++KA+IRN  KGDVHVVN+DPK S FFYANY W  
Sbjct  58   KLKLYRSLGIELEYD----YNKALIRNKDKGDVHVVNLDPKLSDFFYANYLWDL  107



Lambda      K        H        a         alpha
   0.315    0.129    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00012576

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425605 pfam00320, GATA, GATA zinc finger. This domain uses fo...  58.5    1e-13


>CDD:425605 pfam00320, GATA, GATA zinc finger.  This domain uses four cysteine 
residues to coordinate a zinc ion. This domain binds to 
DNA. Two GATA zinc fingers are found in the GATA transcription 
factors. However there are several proteins which only 
contain a single copy of the domain.
Length=36

 Score = 58.5 bits (142),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 21/36 (58%), Positives = 24/36 (67%), Gaps = 1/36 (3%)

Query  17  CQNCGTSTTPLWRRDELGSV-LCNACGLFLKLHGRP  51
           C NCGT+ TPLWRR   G+  LCNACGL+ K  G  
Sbjct  1   CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKKKGLK  36



Lambda      K        H        a         alpha
   0.313    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00012577

Length=81
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425605 pfam00320, GATA, GATA zinc finger. This domain uses fo...  55.4    5e-13


>CDD:425605 pfam00320, GATA, GATA zinc finger.  This domain uses four cysteine 
residues to coordinate a zinc ion. This domain binds to 
DNA. Two GATA zinc fingers are found in the GATA transcription 
factors. However there are several proteins which only 
contain a single copy of the domain.
Length=36

 Score = 55.4 bits (134),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 21/36 (58%), Positives = 24/36 (67%), Gaps = 1/36 (3%)

Query  17  CQNCGTSTTPLWRRDELGSV-LCNACGLFLKLHGRP  51
           C NCGT+ TPLWRR   G+  LCNACGL+ K  G  
Sbjct  1   CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKKKGLK  36



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00018387

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00018388

Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425605 pfam00320, GATA, GATA zinc finger. This domain uses fo...  58.1    2e-13


>CDD:425605 pfam00320, GATA, GATA zinc finger.  This domain uses four cysteine 
residues to coordinate a zinc ion. This domain binds to 
DNA. Two GATA zinc fingers are found in the GATA transcription 
factors. However there are several proteins which only 
contain a single copy of the domain.
Length=36

 Score = 58.1 bits (141),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 21/36 (58%), Positives = 24/36 (67%), Gaps = 1/36 (3%)

Query  17  CQNCGTSTTPLWRRDELGSV-LCNACGLFLKLHGRP  51
           C NCGT+ TPLWRR   G+  LCNACGL+ K  G  
Sbjct  1   CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKKKGLK  36



Lambda      K        H        a         alpha
   0.313    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00018389

Length=101
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425605 pfam00320, GATA, GATA zinc finger. This domain uses fo...  56.9    2e-13


>CDD:425605 pfam00320, GATA, GATA zinc finger.  This domain uses four cysteine 
residues to coordinate a zinc ion. This domain binds to 
DNA. Two GATA zinc fingers are found in the GATA transcription 
factors. However there are several proteins which only 
contain a single copy of the domain.
Length=36

 Score = 56.9 bits (138),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 21/36 (58%), Positives = 24/36 (67%), Gaps = 1/36 (3%)

Query  25  CQNCGTSTTPLWRRDELGSV-LCNACGLFLKLHGRP  59
           C NCGT+ TPLWRR   G+  LCNACGL+ K  G  
Sbjct  1   CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKKKGLK  36



Lambda      K        H        a         alpha
   0.313    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00012578

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425605 pfam00320, GATA, GATA zinc finger. This domain uses fo...  65.8    7e-15


>CDD:425605 pfam00320, GATA, GATA zinc finger.  This domain uses four cysteine 
residues to coordinate a zinc ion. This domain binds to 
DNA. Two GATA zinc fingers are found in the GATA transcription 
factors. However there are several proteins which only 
contain a single copy of the domain.
Length=36

 Score = 65.8 bits (161),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 21/36 (58%), Positives = 24/36 (67%), Gaps = 1/36 (3%)

Query  25  CQNCGTSTTPLWRRDELGSV-LCNACGLFLKLHGRP  59
           C NCGT+ TPLWRR   G+  LCNACGL+ K  G  
Sbjct  1   CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKKKGLK  36



Lambda      K        H        a         alpha
   0.309    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00012579

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425605 pfam00320, GATA, GATA zinc finger. This domain uses fo...  65.8    6e-15


>CDD:425605 pfam00320, GATA, GATA zinc finger.  This domain uses four cysteine 
residues to coordinate a zinc ion. This domain binds to 
DNA. Two GATA zinc fingers are found in the GATA transcription 
factors. However there are several proteins which only 
contain a single copy of the domain.
Length=36

 Score = 65.8 bits (161),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 21/36 (58%), Positives = 24/36 (67%), Gaps = 1/36 (3%)

Query  17  CQNCGTSTTPLWRRDELGSV-LCNACGLFLKLHGRP  51
           C NCGT+ TPLWRR   G+  LCNACGL+ K  G  
Sbjct  1   CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKKKGLK  36



Lambda      K        H        a         alpha
   0.309    0.124    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00012580

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460891 pfam03348, Serinc, Serine incorporator (Serinc). This ...  571     0.0  


>CDD:460891 pfam03348, Serinc, Serine incorporator (Serinc).  This is a family 
of eukaryotic membrane proteins which incorporate serine 
into membranes and facilitate the synthesis of the serine-derived 
lipids phosphatidylserine and sphingolipid. Members 
of this family contain 11 transmembrane domains and form intracellular 
complexes with key enzymes involved in serine and 
sphingolipid biosynthesis.
Length=434

 Score = 571 bits (1475),  Expect = 0.0, Method: Composition-based stats.
 Identities = 239/456 (52%), Positives = 317/456 (70%), Gaps = 28/456 (6%)

Query  24   SCCGAATCSAACSACGKFQNSMMTRIAYAFILLINSIVSWIMLTPWALKKLEHMTLDYME  83
             CCG+A CS  CS C   ++S  TR+AYA +LL+NS+VSWIML+PW  KKL+ ++L +  
Sbjct  2    CCCGSAACSLCCSCCPSCKSSTSTRLAYALLLLLNSLVSWIMLSPWVQKKLKKLSLKW--  59

Query  84   IRCD----GKECHGWVAVHRINFGLGLFHLILALMLLGVKSSRNGRAVLQNGFWGPKVIL  139
              C     G EC+G+ AV+R+ F L LF L+LAL+L+GVKSS++ RA +QNGFW  K + 
Sbjct  60   PGCPGGKGGGECYGYSAVYRVCFALALFFLLLALLLIGVKSSKDPRAAIQNGFWFFKFLA  119

Query  140  WIALVVTSFFIPESFFLVYGHYIAFFCAMLFLLLGLILLVDLAHSWAELCLQKIEDNDSR  199
             + LVV +FFIP  FF  +G YI      LF+L+ LILLVD AHSW E  ++K E+ +S+
Sbjct  120  LLGLVVGAFFIPNGFFTFWG-YIGLIGGFLFILIQLILLVDFAHSWNESWVEKYEETNSK  178

Query  200  LWRGLLIGSTLGMYIASIAMTVLMYVFFAKKHCSMNQAAITINLIVFLIISVVSVQPVVQ  259
            LW   L+GSTL MY  +IA+TVLMY+FF    C +N+  I+INLI+ +I+SVVS+ P VQ
Sbjct  179  LWYAALLGSTLLMYALAIALTVLMYIFFTGSGCGLNKFFISINLILCVIVSVVSILPKVQ  238

Query  260  EHNPRAGLAQAAMVTVYCTYLTMSAVSMEPDDRQCNPLIRAR-GTRTATVVLGAIVTMAT  318
            E NPR+GL Q+++V++YCTYLT SA+S EPDD+ CNPL+R+  GTRTA+VVLGAI T   
Sbjct  239  EANPRSGLLQSSVVSLYCTYLTWSALSSEPDDKNCNPLLRSSEGTRTASVVLGAIFTFLC  298

Query  319  IAYTTTRAATQSLMLGSQAAHGQYAQLRTDDNEHGLVTQQPSRREMRAEALRAAVESGSL  378
            +AY+TTRAA+ S +LG Q +                 TQ+ SR  +R EALRAAVE GSL
Sbjct  299  VAYSTTRAASNSAVLGLQGSG---------------TTQEGSRDSLRFEALRAAVEEGSL  343

Query  379  PASALDESDDESDEYNTQDDERGSTQYNYSLFHIIFFLATTWVATLLTQRLDPETTEDFA  438
            PASALD+   +       DDE+    Y+YS FH IFFLA+ +VA LLT    P+   DF 
Sbjct  344  PASALDDDGGKVL-----DDEKEGVAYSYSFFHFIFFLASLYVAMLLTNWYSPDDAGDFT  398

Query  439  PVGRTYWASWVKIISAWVCYAIYLWTLIAPVLLPDR  474
            PVGR++ A WVKI+S+WVCY +Y+WTL+AP++LPDR
Sbjct  399  PVGRSWAAVWVKIVSSWVCYLLYIWTLVAPLVLPDR  434



Lambda      K        H        a         alpha
   0.326    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00012581

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460891 pfam03348, Serinc, Serine incorporator (Serinc). This ...  570     0.0  


>CDD:460891 pfam03348, Serinc, Serine incorporator (Serinc).  This is a family 
of eukaryotic membrane proteins which incorporate serine 
into membranes and facilitate the synthesis of the serine-derived 
lipids phosphatidylserine and sphingolipid. Members 
of this family contain 11 transmembrane domains and form intracellular 
complexes with key enzymes involved in serine and 
sphingolipid biosynthesis.
Length=434

 Score = 570 bits (1471),  Expect = 0.0, Method: Composition-based stats.
 Identities = 238/456 (52%), Positives = 316/456 (69%), Gaps = 28/456 (6%)

Query  24   SCCGAATCSAACSACGKFQNRMMTRIAYAFILLINSIVSWIMLTPWALKKLEHMTLDYME  83
             CCG+A CS  CS C   ++   TR+AYA +LL+NS+VSWIML+PW  KKL+ ++L +  
Sbjct  2    CCCGSAACSLCCSCCPSCKSSTSTRLAYALLLLLNSLVSWIMLSPWVQKKLKKLSLKW--  59

Query  84   IRCD----GKECHGWVAVHRINFGLGLFHLILALMLLGVKSSRNGRAVLQNGFWGPKVIL  139
              C     G EC+G+ AV+R+ F L LF L+LAL+L+GVKSS++ RA +QNGFW  K + 
Sbjct  60   PGCPGGKGGGECYGYSAVYRVCFALALFFLLLALLLIGVKSSKDPRAAIQNGFWFFKFLA  119

Query  140  WIALVVTSFFIPESFFLVYGHYIAFFCAMLFLLLGLILLVDLAHSWAELCLQKIEDNDSR  199
             + LVV +FFIP  FF  +G YI      LF+L+ LILLVD AHSW E  ++K E+ +S+
Sbjct  120  LLGLVVGAFFIPNGFFTFWG-YIGLIGGFLFILIQLILLVDFAHSWNESWVEKYEETNSK  178

Query  200  LWRGLLIGSTLGMYIASIAMTVLMYVFFAKKHCSMNQAAITINLIVFLIISVVSVQPVVQ  259
            LW   L+GSTL MY  +IA+TVLMY+FF    C +N+  I+INLI+ +I+SVVS+ P VQ
Sbjct  179  LWYAALLGSTLLMYALAIALTVLMYIFFTGSGCGLNKFFISINLILCVIVSVVSILPKVQ  238

Query  260  EHNPRAGLAQAAMVTVYCTYLTMSAVSMEPDDRQCNPLIRAR-GTRTATVVLGAIVTMAT  318
            E NPR+GL Q+++V++YCTYLT SA+S EPDD+ CNPL+R+  GTRTA+VVLGAI T   
Sbjct  239  EANPRSGLLQSSVVSLYCTYLTWSALSSEPDDKNCNPLLRSSEGTRTASVVLGAIFTFLC  298

Query  319  IAYTTTRAATQSLMLGSQAAHGQYAQLRTDDNEHGLVTQQPSRREMRAEALRAAVESGSL  378
            +AY+TTRAA+ S +LG Q +                 TQ+ SR  +R EALRAAVE GSL
Sbjct  299  VAYSTTRAASNSAVLGLQGSG---------------TTQEGSRDSLRFEALRAAVEEGSL  343

Query  379  PASALDESDDESDEYNTQDDERGSTQYNYSLFHIIFFLATTWVATLLTQRLDPETTEDFA  438
            PASALD+   +       DDE+    Y+YS FH IFFLA+ +VA LLT    P+   DF 
Sbjct  344  PASALDDDGGKVL-----DDEKEGVAYSYSFFHFIFFLASLYVAMLLTNWYSPDDAGDFT  398

Query  439  PVGRTYWASWVKIISAWVCYAIYLWTLIAPVLLPDR  474
            PVGR++ A WVKI+S+WVCY +Y+WTL+AP++LPDR
Sbjct  399  PVGRSWAAVWVKIVSSWVCYLLYIWTLVAPLVLPDR  434



Lambda      K        H        a         alpha
   0.326    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00012582

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460891 pfam03348, Serinc, Serine incorporator (Serinc). This ...  567     0.0  


>CDD:460891 pfam03348, Serinc, Serine incorporator (Serinc).  This is a family 
of eukaryotic membrane proteins which incorporate serine 
into membranes and facilitate the synthesis of the serine-derived 
lipids phosphatidylserine and sphingolipid. Members 
of this family contain 11 transmembrane domains and form intracellular 
complexes with key enzymes involved in serine and 
sphingolipid biosynthesis.
Length=434

 Score = 567 bits (1464),  Expect = 0.0, Method: Composition-based stats.
 Identities = 229/434 (53%), Positives = 304/434 (70%), Gaps = 28/434 (6%)

Query  79   MTRIAYAFILLINSIVSWIMLTPWALKKLEHMTLDYMEIRCD----GKECHGWVAVHRIN  134
             TR+AYA +LL+NS+VSWIML+PW  KKL+ ++L +    C     G EC+G+ AV+R+ 
Sbjct  24   STRLAYALLLLLNSLVSWIMLSPWVQKKLKKLSLKW--PGCPGGKGGGECYGYSAVYRVC  81

Query  135  FGLGLFHLILALMLLGVKSSRNGRAVLQNGFWGPKVILWIALVVTSFFIPESFFLVYGHY  194
            F L LF L+LAL+L+GVKSS++ RA +QNGFW  K +  + LVV +FFIP  FF  +G Y
Sbjct  82   FALALFFLLLALLLIGVKSSKDPRAAIQNGFWFFKFLALLGLVVGAFFIPNGFFTFWG-Y  140

Query  195  IAFFCAMLFLLLGLILLVDLAHSWAELCLQKIEDNDSRLWRGLLIGSTLGMYIASIAMTV  254
            I      LF+L+ LILLVD AHSW E  ++K E+ +S+LW   L+GSTL MY  +IA+TV
Sbjct  141  IGLIGGFLFILIQLILLVDFAHSWNESWVEKYEETNSKLWYAALLGSTLLMYALAIALTV  200

Query  255  LMYVFFAKKHCSMNQAAITINLIVFLIISVVSVQPVVQEHNPRAGLAQAAMVTVYCTYLT  314
            LMY+FF    C +N+  I+INLI+ +I+SVVS+ P VQE NPR+GL Q+++V++YCTYLT
Sbjct  201  LMYIFFTGSGCGLNKFFISINLILCVIVSVVSILPKVQEANPRSGLLQSSVVSLYCTYLT  260

Query  315  MSAVSMEPDDRQCNPLIRAR-GTRTATVVLGAIVTMATIAYTTTRAATQSLMLGSQAAHG  373
             SA+S EPDD+ CNPL+R+  GTRTA+VVLGAI T   +AY+TTRAA+ S +LG Q +  
Sbjct  261  WSALSSEPDDKNCNPLLRSSEGTRTASVVLGAIFTFLCVAYSTTRAASNSAVLGLQGSG-  319

Query  374  QYAQLRTDDNEHGLVTQQPSRREMRAEALRAAVESGSLPASALDESDDESDEYNTQDDER  433
                           TQ+ SR  +R EALRAAVE GSLPASALD+   +       DDE+
Sbjct  320  --------------TTQEGSRDSLRFEALRAAVEEGSLPASALDDDGGKVL-----DDEK  360

Query  434  GSTQYNYSLFHIIFFLATTWVATLLTQRLDPETTEDFAPVGRTYWASWVKIISAWVCYAI  493
                Y+YS FH IFFLA+ +VA LLT    P+   DF PVGR++ A WVKI+S+WVCY +
Sbjct  361  EGVAYSYSFFHFIFFLASLYVAMLLTNWYSPDDAGDFTPVGRSWAAVWVKIVSSWVCYLL  420

Query  494  YLWTLIAPVLLPDR  507
            Y+WTL+AP++LPDR
Sbjct  421  YIWTLVAPLVLPDR  434



Lambda      K        H        a         alpha
   0.326    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 635907720


Query= TCONS_00012584

Length=1046
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain...  100     3e-25
CDD:426060 pfam01119, DNA_mis_repair, DNA mismatch repair protein...  84.5    6e-20


>CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain.  MutL 
and MutS are key components of the DNA repair machinery that 
corrects replication errors. MutS recognizes mispaired or 
unpaired bases in a DNA duplex and in the presence of ATP, recruits 
MutL to form a DNA signaling complex for repair. The 
N terminal region of MutL contains the ATPase domain and the 
C terminal is involved in dimerization.
Length=145

 Score = 100 bits (251),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 29/168 (17%)

Query  791  IGQFNLGFILATRPSEDGSADSKDELFIIDQHASDEKFNFERLQ---AETVVQNQRLVQP  847
            +GQ +  +ILA         +++D L++IDQHA+ E+  +E+L+   AE  +  Q L+ P
Sbjct  4    LGQVHGTYILA---------ENEDGLYLIDQHAAHERILYEKLKRALAEGGLAAQPLLIP  54

Query  848  KRLDLTAVEEEIVIENRAALEKNGFVVEVDDSGNEPIGQRCKLISLPLSKEVVFGVRDLE  907
              L+L+  E  ++ E++  L + GF +E      E       + S+P           + 
Sbjct  55   LVLELSPEEAALLEEHKEELAQLGFELE------EFGPNSVIVRSVPALLRQQNLQELIR  108

Query  908  ELIVLLSEMPATDSRGSAMQTHIPRPSKVRKMFAMRACRSSIMIGKSL  955
            EL+  L+E   +                + ++ A  AC S++  G+ L
Sbjct  109  ELLDELAEKGGSS-----------LEESLEELLATMACHSAVRAGRRL  145


>CDD:426060 pfam01119, DNA_mis_repair, DNA mismatch repair protein, C-terminal 
domain.  This family represents the C-terminal domain 
of the mutL/hexB/PMS1 family. This domain has a ribosomal S5 
domain 2-like fold.
Length=117

 Score = 84.5 bits (210),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 19/133 (14%)

Query  220  ANVYGAKTLLALIPLDLTLEFEPSAAGRRTAEGELHTIQVKGHISRPVFGEGRQTPDRQM  279
            A +YG +    L+P++                 E   +++ G+IS+P     R   D Q 
Sbjct  1    AAIYGKEFAENLLPIE----------------KEDDGLRLSGYISKPTLS--RSNRDYQY  42

Query  280  FFVNSRPCGLPQIAKAFNEVYKSFNVS-QSPFVFADLHMDTNAYDVNVSPDKRTILLHDA  338
             FVN RP     ++ A  E Y+      + P     L +D    DVNV P KR +   D 
Sbjct  43   LFVNGRPVRDKLLSHAIREAYRDLLPKGRYPVAVLFLEIDPELVDVNVHPTKREVRFRDE  102

Query  339  GALIDSLKQSLTE  351
              + D +K++L E
Sbjct  103  REVYDFIKEALRE  115



Lambda      K        H        a         alpha
   0.311    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1345082200


Query= TCONS_00012583

Length=1009
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain...  100     3e-25
CDD:426060 pfam01119, DNA_mis_repair, DNA mismatch repair protein...  84.5    7e-20


>CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain.  MutL 
and MutS are key components of the DNA repair machinery that 
corrects replication errors. MutS recognizes mispaired or 
unpaired bases in a DNA duplex and in the presence of ATP, recruits 
MutL to form a DNA signaling complex for repair. The 
N terminal region of MutL contains the ATPase domain and the 
C terminal is involved in dimerization.
Length=145

 Score = 100 bits (251),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 29/168 (17%)

Query  754  IGQFNLGFILATRPSEDGSADSKDELFIIDQHASDEKFNFERLQ---AETVVQNQRLVQP  810
            +GQ +  +ILA         +++D L++IDQHA+ E+  +E+L+   AE  +  Q L+ P
Sbjct  4    LGQVHGTYILA---------ENEDGLYLIDQHAAHERILYEKLKRALAEGGLAAQPLLIP  54

Query  811  KRLDLTAVEEEIVIENRAALEKNGFVVEVDDSGNEPIGQRCKLISLPLSKEVVFGVRDLE  870
              L+L+  E  ++ E++  L + GF +E      E       + S+P           + 
Sbjct  55   LVLELSPEEAALLEEHKEELAQLGFELE------EFGPNSVIVRSVPALLRQQNLQELIR  108

Query  871  ELIVLLSEMPATDSRGSAMQTHIPRPSKVRKMFAMRACRSSIMIGKSL  918
            EL+  L+E   +                + ++ A  AC S++  G+ L
Sbjct  109  ELLDELAEKGGSS-----------LEESLEELLATMACHSAVRAGRRL  145


>CDD:426060 pfam01119, DNA_mis_repair, DNA mismatch repair protein, C-terminal 
domain.  This family represents the C-terminal domain 
of the mutL/hexB/PMS1 family. This domain has a ribosomal S5 
domain 2-like fold.
Length=117

 Score = 84.5 bits (210),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 19/133 (14%)

Query  183  ANVYGAKTLLALIPLDLTLEFEPSAAGRRTAEGELHTIQVKGHISRPVFGEGRQTPDRQM  242
            A +YG +    L+P++                 E   +++ G+IS+P     R   D Q 
Sbjct  1    AAIYGKEFAENLLPIE----------------KEDDGLRLSGYISKPTLS--RSNRDYQY  42

Query  243  FFVNSRPCGLPQIAKAFNEVYKSFNVS-QSPFVFADLHMDTNAYDVNVSPDKRTILLHDA  301
             FVN RP     ++ A  E Y+      + P     L +D    DVNV P KR +   D 
Sbjct  43   LFVNGRPVRDKLLSHAIREAYRDLLPKGRYPVAVLFLEIDPELVDVNVHPTKREVRFRDE  102

Query  302  GALIDSLKQSLTE  314
              + D +K++L E
Sbjct  103  REVYDFIKEALRE  115



Lambda      K        H        a         alpha
   0.311    0.128    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1292694788


Query= TCONS_00012586

Length=982
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  364     4e-116


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 364 bits (937),  Expect = 4e-116, Method: Composition-based stats.
 Identities = 134/263 (51%), Positives = 167/263 (63%), Gaps = 11/263 (4%)

Query  636  CSVVLVKFLAALQLGSKRRPAPQDKFVICLVPAYTEGEDALRKGLDSLTALQYDNKRKLI  695
             S ++ KF+AA  LG+KR      K  ICLV  Y+EGE+ LR  LDSL    Y +  KL+
Sbjct  1    VSTIIHKFIAAQPLGTKRPFGFPLKHTICLVTCYSEGEEGLRTTLDSLATTDYPDSHKLL  60

Query  696  FVICDGMIVGGGNDRPTPKIVLDILG--VDPKIDPPALPFKSLGQGSDQLNYGKVYSGLY  753
             VICDGMI G GNDR TP IVLD++   V PK DP  L + ++  GS + N  KVY+G Y
Sbjct  61   LVICDGMIKGSGNDRSTPDIVLDMMKDAVIPKEDPEPLSYVAVASGSKRHNMAKVYAGFY  120

Query  754  EYEGNVVPYIVVVKV---------GKESEQNRPKPGNRGKRDSQILLLNFLNRVHHRSPM  804
            EY+G+        +          G  SE +  KPGNRGKRDSQI+L+ FL +VH    M
Sbjct  121  EYDGDSHIPEEKQQRVPMIVVVKCGTPSEASEKKPGNRGKRDSQIILMRFLQKVHFDERM  180

Query  805  SPLELEMFHQINNIIGVDPELYEYCLMVDADTSVREDSLNRLVAACANDARIAGICGETS  864
            +PLE E+FHQI N+ GV P+ YEY LMVDADT V  DSL R+VA   +D  I G+CGET 
Sbjct  181  TPLEYELFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETK  240

Query  865  LQNEERSWWTMIQVYEYYISHHL  887
            + N+ +SW T IQV+EYYISHHL
Sbjct  241  IANKRQSWVTAIQVFEYYISHHL  263



Lambda      K        H        a         alpha
   0.320    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1254466136


Query= TCONS_00018390

Length=904
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  402     2e-131


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 402 bits (1036),  Expect = 2e-131, Method: Composition-based stats.
 Identities = 147/279 (53%), Positives = 182/279 (65%), Gaps = 11/279 (4%)

Query  636  CSVVLVKFLAALQLGSKRRPAPQDKFVICLVPAYTEGEDALRKGLDSLTALQYDNKRKLI  695
             S ++ KF+AA  LG+KR      K  ICLV  Y+EGE+ LR  LDSL    Y +  KL+
Sbjct  1    VSTIIHKFIAAQPLGTKRPFGFPLKHTICLVTCYSEGEEGLRTTLDSLATTDYPDSHKLL  60

Query  696  FVICDGMIVGGGNDRPTPKIVLDILG--VDPKIDPPALPFKSLGQGSDQLNYGKVYSGLY  753
             VICDGMI G GNDR TP IVLD++   V PK DP  L + ++  GS + N  KVY+G Y
Sbjct  61   LVICDGMIKGSGNDRSTPDIVLDMMKDAVIPKEDPEPLSYVAVASGSKRHNMAKVYAGFY  120

Query  754  EYEGNVVPYIVVVKV---------GKESEQNRPKPGNRGKRDSQILLLNFLNRVHHRSPM  804
            EY+G+        +          G  SE +  KPGNRGKRDSQI+L+ FL +VH    M
Sbjct  121  EYDGDSHIPEEKQQRVPMIVVVKCGTPSEASEKKPGNRGKRDSQIILMRFLQKVHFDERM  180

Query  805  SPLELEMFHQINNIIGVDPELYEYCLMVDADTSVREDSLNRLVAACANDARIAGICGETS  864
            +PLE E+FHQI N+ GV P+ YEY LMVDADT V  DSL R+VA   +D  I G+CGET 
Sbjct  181  TPLEYELFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETK  240

Query  865  LQNEERSWWTMIQVYEYYISHHLAKAFESLFGSVTCLPG  903
            + N+ +SW T IQV+EYYISHHL+KAFES+FG VTCLPG
Sbjct  241  IANKRQSWVTAIQVFEYYISHHLSKAFESVFGGVTCLPG  279



Lambda      K        H        a         alpha
   0.320    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1161330826


Query= TCONS_00018391

Length=1265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  579     0.0  


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 579 bits (1494),  Expect = 0.0, Method: Composition-based stats.
 Identities = 228/526 (43%), Positives = 295/526 (56%), Gaps = 99/526 (19%)

Query  636   CSVVLVKFLAALQLGSKRRPAPQDKFVICLVPAYTEGEDALRKGLDSLTALQYDNKRKLI  695
              S ++ KF+AA  LG+KR      K  ICLV  Y+EGE+ LR  LDSL    Y +  KL+
Sbjct  1     VSTIIHKFIAAQPLGTKRPFGFPLKHTICLVTCYSEGEEGLRTTLDSLATTDYPDSHKLL  60

Query  696   FVICDGMIVGGGNDRPTPKIVLDILG--VDPKIDPPALPFKSLGQGSDQLNYGKVYSGLY  753
              VICDGMI G GNDR TP IVLD++   V PK DP  L + ++  GS + N  KVY+G Y
Sbjct  61    LVICDGMIKGSGNDRSTPDIVLDMMKDAVIPKEDPEPLSYVAVASGSKRHNMAKVYAGFY  120

Query  754   EYEGNVVPYIVVVKV---------GKESEQNRPKPGNRGKRDSQILLLNFLNRVHHRSPM  804
             EY+G+        +          G  SE +  KPGNRGKRDSQI+L+ FL +VH    M
Sbjct  121   EYDGDSHIPEEKQQRVPMIVVVKCGTPSEASEKKPGNRGKRDSQIILMRFLQKVHFDERM  180

Query  805   SPLELEMFHQINNIIGVDPELYE-------------------------------------  827
             +PLE E+FHQI N+ GV P+ YE                                     
Sbjct  181   TPLEYELFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETK  240

Query  828   -------------------------------------------YRLRTADKG----RPLI  840
                                                        YR++    G     P++
Sbjct  241   IANKRQSWVTAIQVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKGGDGYWVPIL  300

Query  841   ISDKVIEEYADNDVDTLHKKNLLSLGEDRFLTTLMTKHFPTMSYKFIPDAYASTAAPETW  900
              S  ++E Y++N VDTLHKKNLL LGEDR+LTTLM K FP     F+P A   T AP+T+
Sbjct  301   ASPDIVEHYSENVVDTLHKKNLLLLGEDRYLTTLMLKTFPKRKTVFVPQAVCKTIAPDTF  360

Query  901   SVLLSQRRRWINSTIHNLVELAALKDLCGFCCFSMRFVVLVDLIGTLILPATCVYIGYLI  960
              VLLSQRRRWINST+HNL+EL  ++DLCG  CFSM+FVV ++LIGT++LPA   +  YLI
Sbjct  361   KVLLSQRRRWINSTVHNLMELVLVRDLCGTFCFSMQFVVFIELIGTVVLPAAIAFTVYLI  420

Query  961   YRVASHTGPFPYISLAILAGVYGLQAIIFIVK-RQWQHIGWMIIYILAFPIYNFILPLYA  1019
                     P P I L +LA + GL AI+ ++  R+W +IGWM++Y+LA PI+NF+LPLYA
Sbjct  421   VISILTPDPVPVIPLVLLAAILGLPAILILLTTRKWVYIGWMLVYLLALPIWNFVLPLYA  480

Query  1020  FWKQDDFSWGSTRIVLGEKGTKRVVAVEDEA-FDPRSIPLQRWDDY  1064
             FW  DDFSWG+TR+V GEKG K  V   DE  FDP  IP++RW+++
Sbjct  481   FWHFDDFSWGNTRVVAGEKGKK--VHGTDEGEFDPSKIPMKRWEEF  524



Lambda      K        H        a         alpha
   0.320    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1606492200


Query= TCONS_00012587

Length=829
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  251     1e-74


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 251 bits (642),  Expect = 1e-74, Method: Composition-based stats.
 Identities = 94/198 (47%), Positives = 119/198 (60%), Gaps = 11/198 (6%)

Query  636  CSVVLVKFLAALQLGSKRRPAPQDKFVICLVPAYTEGEDALRKGLDSLTALQYDNKRKLI  695
             S ++ KF+AA  LG+KR      K  ICLV  Y+EGE+ LR  LDSL    Y +  KL+
Sbjct  1    VSTIIHKFIAAQPLGTKRPFGFPLKHTICLVTCYSEGEEGLRTTLDSLATTDYPDSHKLL  60

Query  696  FVICDGMIVGGGNDRPTPKIVLDILG--VDPKIDPPALPFKSLGQGSDQLNYGKVYSGLY  753
             VICDGMI G GNDR TP IVLD++   V PK DP  L + ++  GS + N  KVY+G Y
Sbjct  61   LVICDGMIKGSGNDRSTPDIVLDMMKDAVIPKEDPEPLSYVAVASGSKRHNMAKVYAGFY  120

Query  754  EYEGNVVPYIVVVKV---------GKESEQNRPKPGNRGKRDSQILLLNFLNRVHHRSPM  804
            EY+G+        +          G  SE +  KPGNRGKRDSQI+L+ FL +VH    M
Sbjct  121  EYDGDSHIPEEKQQRVPMIVVVKCGTPSEASEKKPGNRGKRDSQIILMRFLQKVHFDERM  180

Query  805  SPLELEMFHQINNIIGVD  822
            +PLE E+FHQI N+ GV 
Sbjct  181  TPLEYELFHQIWNVTGVS  198



Lambda      K        H        a         alpha
   0.320    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1053667276


Query= TCONS_00018392

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0768    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00012590

Length=1848
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  869     0.0  
CDD:395017 pfam00063, Myosin_head, Myosin head (motor domain)         244     8e-69
CDD:462592 pfam08766, DEK_C, DEK C terminal domain. DEK is a chro...  74.3    7e-17
CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  61.5    4e-12


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 869 bits (2247),  Expect = 0.0, Method: Composition-based stats.
 Identities = 287/527 (54%), Positives = 375/527 (71%), Gaps = 18/527 (3%)

Query  1209  CSIIVFKFLAALQFGRKNVPENLDKFIICQVPAYTEDEESLRRAIDSMARMRYDDKRKLL  1268
              S I+ KF+AA   G K       K  IC V  Y+E EE LR  +DS+A   Y D  KLL
Sbjct  1     VSTIIHKFIAAQPLGTKRPFGFPLKHTICLVTCYSEGEEGLRTTLDSLATTDYPDSHKLL  60

Query  1269  VVICDGMIIGQGNDRPTPRIVLDILG--VPESVDPEPLSFESLGEGQKQHNMGKVYSGLY  1326
             +VICDGMI G GNDR TP IVLD++   V    DPEPLS+ ++  G K+HNM KVY+G Y
Sbjct  61    LVICDGMIKGSGNDRSTPDIVLDMMKDAVIPKEDPEPLSYVAVASGSKRHNMAKVYAGFY  120

Query  1327  EVQG---------HIVPFLVIVKVGKPSEVS--RPGNRGKRDSQMVLMRFLNRVHYNLPM  1375
             E  G           VP +V+VK G PSE S  +PGNRGKRDSQ++LMRFL +VH++  M
Sbjct  121   EYDGDSHIPEEKQQRVPMIVVVKCGTPSEASEKKPGNRGKRDSQIILMRFLQKVHFDERM  180

Query  1376  SPMELEMHHQIRNVIGVNPTFYEFILQVDADTVVAPDSATRMVAAFLNDTRLIGVCGETA  1435
             +P+E E+ HQI NV GV+P FYE++L VDADT V PDS TRMVA  ++D  ++G+CGET 
Sbjct  181   TPLEYELFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETK  240

Query  1436  LTNAKNSAVTMIQVYEYYISHNLTKAFESLFGSVTCLPGCFTMYRIRSAETA----KPLF  1491
             + N + S VT IQV+EYYISH+L+KAFES+FG VTCLPGCF+MYRI++ +       P+ 
Sbjct  241   IANKRQSWVTAIQVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKGGDGYWVPIL  300

Query  1492  VSKEVVDAYAEIRVDTLHMKNLLHLGEDRYLTTLLLKHHSKYKTKYISSAKAWTIAPESW  1551
              S ++V+ Y+E  VDTLH KNLL LGEDRYLTTL+LK   K KT ++  A   TIAP+++
Sbjct  301   ASPDIVEHYSENVVDTLHKKNLLLLGEDRYLTTLMLKTFPKRKTVFVPQAVCKTIAPDTF  360

Query  1552  TVFLSQRRRWINSTVHNLIELIPMQQLCGFCCFSMRFVVFVDLLSTVIQPVTLAYIIYLI  1611
              V LSQRRRWINSTVHNL+EL+ ++ LCG  CFSM+FVVF++L+ TV+ P  +A+ +YLI
Sbjct  361   KVLLSQRRRWINSTVHNLMELVLVRDLCGTFCFSMQFVVFIELIGTVVLPAAIAFTVYLI  420

Query  1612  YWLVKDTSTIPYTSLILLAAIYGLQALIFIIR-RKWEMVGWMIVYLLALPVFSLALPLYS  1670
                +     +P   L+LLAAI GL A++ ++  RKW  +GWM+VYLLALP+++  LPLY+
Sbjct  421   VISILTPDPVPVIPLVLLAAILGLPAILILLTTRKWVYIGWMLVYLLALPIWNFVLPLYA  480

Query  1671  FWHMDDFTWGNTRIITGEKGRKVVISDEGKFDPASIPKKKWEEYQTE  1717
             FWH DDF+WGNTR++ GEKG+KV  +DEG+FDP+ IP K+WEE++ E
Sbjct  481   FWHFDDFSWGNTRVVAGEKGKKVHGTDEGEFDPSKIPMKRWEEFERE  527


>CDD:395017 pfam00063, Myosin_head, Myosin head (motor domain).  
Length=674

 Score = 244 bits (625),  Expect = 8e-69, Method: Composition-based stats.
 Identities = 176/709 (25%), Positives = 299/709 (42%), Gaps = 131/709 (18%)

Query  81   LAKRAFTRLGARGENQAVVFLGESGSGKTTIRSHLLSAFLSFSST-------PLSSKLSY  133
            +A  A+  +    ENQ+++  GESG+GKT     ++    S S +        L  ++  
Sbjct  71   IADEAYRSMLQDKENQSILISGESGAGKTENTKKIMQYLASVSGSGSAGNVGRLEEQILQ  130

Query  134  AAFLFDTLTTTKSLTTQTASKAGLFLELQYDGSSSVNPTLIGGKIIDHRLERSRITSVPT  193
            +  + +     K++    +S+ G ++E+Q+D        ++GGKI  + LE+SR+     
Sbjct  131  SNPILEAFGNAKTVRNNNSSRFGKYIEIQFDAKGD----IVGGKIETYLLEKSRVVYQAE  186

Query  194  GERSFHVLYYLLAGTSPAEKAHLGFDKAVHVSTSSGAIGHKRWRYLGHPTQLKV-GVNDV  252
            GER++H+ Y LLAG S   K  L                 K + YL       + G++D 
Sbjct  187  GERNYHIFYQLLAGASAQLKKELRLTNP------------KDYHYLSQSGCYTIDGIDDS  234

Query  253  EGFQHFKTALRKLEFPRSEIAEICQILATILHIGQLEFASGQATTTHAEESGGYSHEGGE  312
            E F+    A+  L F   E   I +I+A ILH+G +EF           +          
Sbjct  235  EEFKITDKAMDILGFSDEEQMGIFRIVAAILHLGNIEFKKE------RNDEQA-------  281

Query  313  TVTIVKNKDVLSIIAAFLGLSVEDLENSFGYRTKTIHRERVTVMLDPKGARQNADELART  372
               +  + + L   A+ LG+   +LE +   R     RE V+   + + A    D LA+ 
Sbjct  282  ---VPDDTENLQKAASLLGIDSTELEKALCKRRIKTGRETVSKPQNVEQANYARDALAKA  338

Query  373  IYSLLVAYVIEAVNQRICAAEDSVANTISIVDFPGFAQACATGSTLDQLF-NNAATELLY  431
            IYS L  ++++ +N+ +       A+ I ++D  GF           ++F  N+  +L  
Sbjct  339  IYSRLFDWLVDRINKSLDVKTIEKASFIGVLDIYGF-----------EIFEKNSFEQLCI  387

Query  432  NFC---LQSFFDRKADELE-----REEVSVPATSYFDNTDAVRGLLKHGNGLLSILDDQT  483
            N+    LQ FF+    +LE     RE +      + DN   +  + K   G+LS+LD++ 
Sbjct  388  NYVNEKLQQFFNHHMFKLEQEEYVREGIEWTFIDFGDNQPCIDLIEKKPLGILSLLDEEC  447

Query  484  RR-GRTDNQLLESLRRRFENKNPTIIVEGSKRTSLISQNARSAFTVKHFAGEIDYSVNGL  542
                 TD   L+ L   F +K+P       ++  L  +   + F +KH+AG+++Y+V G 
Sbjct  448  LFPKATDQTFLDKLYSTF-SKHP-----HFQKPRLQGE---THFIIKHYAGDVEYNVEGF  498

Query  543  IEENGEFISGDLMRLMKSTKSDFVRELFGQAALQTVTHPKEKTAIMQAQVSSKPLRMPSM  602
            +E+N + ++ DL+ L+KS+    + ELF                                
Sbjct  499  LEKNKDPLNDDLVSLLKSSSDPLLAELF--------------------------------  526

Query  603  ARRKTSPSSRLAFDAGDADEVESQAESIAKDSSSGRRKSAMLTSGIQGAAGQFLSSLDIV  662
                            D +  ES A + +  S+  R K     +       QF  SL  +
Sbjct  527  ---------------PDYETAESAAANESGKSTPKRTKKKRFIT----VGSQFKESLGEL  567

Query  663  NKCLSSTNLNPYFIFCLKPNDRRIANQFDSKCVRAQVQMFGIAEISQRLRNADFSVFLPF  722
             K L+ST  NP++I C+KPN+++ A  FD+  V  Q++  G+ E   R+R A F   + F
Sbjct  568  MKTLNST--NPHYIRCIKPNEKKRAGVFDNSLVLHQLRCNGVLE-GIRIRRAGFPNRITF  624

Query  723  AEF------LGLAEIGNIVVGSDKEKAEVVLDEKRWPGNEARVGSTGVF  765
             EF      L          G  K+  E +L        E + G T +F
Sbjct  625  QEFVQRYRILAPKTWPK-WKGDAKKGCEAILQSLNLDKEEYQFGKTKIF  672


>CDD:462592 pfam08766, DEK_C, DEK C terminal domain.  DEK is a chromatin 
associated protein that is linked with cancers and autoimmune 
disease. This domain is found at the C terminal of DEK and 
is of clinical importance since it can reverse the characteristic 
abnormal DNA-mutagen sensitivity in fibroblasts from 
ataxia-telangiectasia (A-T) patients. The structure of this 
domain shows it to be homologous to the E2F/DP transcription 
factor family. This domain is also found in chitin synthase 
proteins and in protein phosphastases.
Length=54

 Score = 74.3 bits (184),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 0/54 (0%)

Query  1791  PSDDAILAEIREILRTADLMSVTKKSIKLELERRFGVNLDLKRPYINSATEAVL  1844
             P+D+ I   IREILRTADL +VTKK ++ +LE R GV+L  ++ +IN+  + +L
Sbjct  1     PTDEEIREAIREILRTADLETVTKKQVRKQLEERLGVDLSERKAFINALIDEIL  54


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 61.5 bits (150),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query  956   SAAELSSHNGKDGHSSFIAIRGVVFDLDKFMPGHYPHIVPESALKKYAGVDATGLFPVQ  1014
             +  ELS HNG      ++AI G V+D+ KF+  H P    E  +   AG DAT  F   
Sbjct  1     TLEELSKHNGDG--DCWVAINGKVYDVTKFLKEH-P--GGEDVILSAAGKDATDAFEAI  54



Lambda      K        H        a         alpha
   0.320    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2337642352


Query= TCONS_00012591

Length=1848
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  869     0.0  
CDD:395017 pfam00063, Myosin_head, Myosin head (motor domain)         244     8e-69
CDD:462592 pfam08766, DEK_C, DEK C terminal domain. DEK is a chro...  74.3    7e-17
CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  61.5    4e-12


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 869 bits (2247),  Expect = 0.0, Method: Composition-based stats.
 Identities = 287/527 (54%), Positives = 375/527 (71%), Gaps = 18/527 (3%)

Query  1209  CSIIVFKFLAALQFGRKNVPENLDKFIICQVPAYTEDEESLRRAIDSMARMRYDDKRKLL  1268
              S I+ KF+AA   G K       K  IC V  Y+E EE LR  +DS+A   Y D  KLL
Sbjct  1     VSTIIHKFIAAQPLGTKRPFGFPLKHTICLVTCYSEGEEGLRTTLDSLATTDYPDSHKLL  60

Query  1269  VVICDGMIIGQGNDRPTPRIVLDILG--VPESVDPEPLSFESLGEGQKQHNMGKVYSGLY  1326
             +VICDGMI G GNDR TP IVLD++   V    DPEPLS+ ++  G K+HNM KVY+G Y
Sbjct  61    LVICDGMIKGSGNDRSTPDIVLDMMKDAVIPKEDPEPLSYVAVASGSKRHNMAKVYAGFY  120

Query  1327  EVQG---------HIVPFLVIVKVGKPSEVS--RPGNRGKRDSQMVLMRFLNRVHYNLPM  1375
             E  G           VP +V+VK G PSE S  +PGNRGKRDSQ++LMRFL +VH++  M
Sbjct  121   EYDGDSHIPEEKQQRVPMIVVVKCGTPSEASEKKPGNRGKRDSQIILMRFLQKVHFDERM  180

Query  1376  SPMELEMHHQIRNVIGVNPTFYEFILQVDADTVVAPDSATRMVAAFLNDTRLIGVCGETA  1435
             +P+E E+ HQI NV GV+P FYE++L VDADT V PDS TRMVA  ++D  ++G+CGET 
Sbjct  181   TPLEYELFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETK  240

Query  1436  LTNAKNSAVTMIQVYEYYISHNLTKAFESLFGSVTCLPGCFTMYRIRSAETA----KPLF  1491
             + N + S VT IQV+EYYISH+L+KAFES+FG VTCLPGCF+MYRI++ +       P+ 
Sbjct  241   IANKRQSWVTAIQVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKGGDGYWVPIL  300

Query  1492  VSKEVVDAYAEIRVDTLHMKNLLHLGEDRYLTTLLLKHHSKYKTKYISSAKAWTIAPESW  1551
              S ++V+ Y+E  VDTLH KNLL LGEDRYLTTL+LK   K KT ++  A   TIAP+++
Sbjct  301   ASPDIVEHYSENVVDTLHKKNLLLLGEDRYLTTLMLKTFPKRKTVFVPQAVCKTIAPDTF  360

Query  1552  TVFLSQRRRWINSTVHNLIELIPMQQLCGFCCFSMRFVVFVDLLSTVIQPVTLAYIIYLI  1611
              V LSQRRRWINSTVHNL+EL+ ++ LCG  CFSM+FVVF++L+ TV+ P  +A+ +YLI
Sbjct  361   KVLLSQRRRWINSTVHNLMELVLVRDLCGTFCFSMQFVVFIELIGTVVLPAAIAFTVYLI  420

Query  1612  YWLVKDTSTIPYTSLILLAAIYGLQALIFIIR-RKWEMVGWMIVYLLALPVFSLALPLYS  1670
                +     +P   L+LLAAI GL A++ ++  RKW  +GWM+VYLLALP+++  LPLY+
Sbjct  421   VISILTPDPVPVIPLVLLAAILGLPAILILLTTRKWVYIGWMLVYLLALPIWNFVLPLYA  480

Query  1671  FWHMDDFTWGNTRIITGEKGRKVVISDEGKFDPASIPKKKWEEYQTE  1717
             FWH DDF+WGNTR++ GEKG+KV  +DEG+FDP+ IP K+WEE++ E
Sbjct  481   FWHFDDFSWGNTRVVAGEKGKKVHGTDEGEFDPSKIPMKRWEEFERE  527


>CDD:395017 pfam00063, Myosin_head, Myosin head (motor domain).  
Length=674

 Score = 244 bits (625),  Expect = 8e-69, Method: Composition-based stats.
 Identities = 176/709 (25%), Positives = 299/709 (42%), Gaps = 131/709 (18%)

Query  81   LAKRAFTRLGARGENQAVVFLGESGSGKTTIRSHLLSAFLSFSST-------PLSSKLSY  133
            +A  A+  +    ENQ+++  GESG+GKT     ++    S S +        L  ++  
Sbjct  71   IADEAYRSMLQDKENQSILISGESGAGKTENTKKIMQYLASVSGSGSAGNVGRLEEQILQ  130

Query  134  AAFLFDTLTTTKSLTTQTASKAGLFLELQYDGSSSVNPTLIGGKIIDHRLERSRITSVPT  193
            +  + +     K++    +S+ G ++E+Q+D        ++GGKI  + LE+SR+     
Sbjct  131  SNPILEAFGNAKTVRNNNSSRFGKYIEIQFDAKGD----IVGGKIETYLLEKSRVVYQAE  186

Query  194  GERSFHVLYYLLAGTSPAEKAHLGFDKAVHVSTSSGAIGHKRWRYLGHPTQLKV-GVNDV  252
            GER++H+ Y LLAG S   K  L                 K + YL       + G++D 
Sbjct  187  GERNYHIFYQLLAGASAQLKKELRLTNP------------KDYHYLSQSGCYTIDGIDDS  234

Query  253  EGFQHFKTALRKLEFPRSEIAEICQILATILHIGQLEFASGQATTTHAEESGGYSHEGGE  312
            E F+    A+  L F   E   I +I+A ILH+G +EF           +          
Sbjct  235  EEFKITDKAMDILGFSDEEQMGIFRIVAAILHLGNIEFKKE------RNDEQA-------  281

Query  313  TVTIVKNKDVLSIIAAFLGLSVEDLENSFGYRTKTIHRERVTVMLDPKGARQNADELART  372
               +  + + L   A+ LG+   +LE +   R     RE V+   + + A    D LA+ 
Sbjct  282  ---VPDDTENLQKAASLLGIDSTELEKALCKRRIKTGRETVSKPQNVEQANYARDALAKA  338

Query  373  IYSLLVAYVIEAVNQRICAAEDSVANTISIVDFPGFAQACATGSTLDQLF-NNAATELLY  431
            IYS L  ++++ +N+ +       A+ I ++D  GF           ++F  N+  +L  
Sbjct  339  IYSRLFDWLVDRINKSLDVKTIEKASFIGVLDIYGF-----------EIFEKNSFEQLCI  387

Query  432  NFC---LQSFFDRKADELE-----REEVSVPATSYFDNTDAVRGLLKHGNGLLSILDDQT  483
            N+    LQ FF+    +LE     RE +      + DN   +  + K   G+LS+LD++ 
Sbjct  388  NYVNEKLQQFFNHHMFKLEQEEYVREGIEWTFIDFGDNQPCIDLIEKKPLGILSLLDEEC  447

Query  484  RR-GRTDNQLLESLRRRFENKNPTIIVEGSKRTSLISQNARSAFTVKHFAGEIDYSVNGL  542
                 TD   L+ L   F +K+P       ++  L  +   + F +KH+AG+++Y+V G 
Sbjct  448  LFPKATDQTFLDKLYSTF-SKHP-----HFQKPRLQGE---THFIIKHYAGDVEYNVEGF  498

Query  543  IEENGEFISGDLMRLMKSTKSDFVRELFGQAALQTVTHPKEKTAIMQAQVSSKPLRMPSM  602
            +E+N + ++ DL+ L+KS+    + ELF                                
Sbjct  499  LEKNKDPLNDDLVSLLKSSSDPLLAELF--------------------------------  526

Query  603  ARRKTSPSSRLAFDAGDADEVESQAESIAKDSSSGRRKSAMLTSGIQGAAGQFLSSLDIV  662
                            D +  ES A + +  S+  R K     +       QF  SL  +
Sbjct  527  ---------------PDYETAESAAANESGKSTPKRTKKKRFIT----VGSQFKESLGEL  567

Query  663  NKCLSSTNLNPYFIFCLKPNDRRIANQFDSKCVRAQVQMFGIAEISQRLRNADFSVFLPF  722
             K L+ST  NP++I C+KPN+++ A  FD+  V  Q++  G+ E   R+R A F   + F
Sbjct  568  MKTLNST--NPHYIRCIKPNEKKRAGVFDNSLVLHQLRCNGVLE-GIRIRRAGFPNRITF  624

Query  723  AEF------LGLAEIGNIVVGSDKEKAEVVLDEKRWPGNEARVGSTGVF  765
             EF      L          G  K+  E +L        E + G T +F
Sbjct  625  QEFVQRYRILAPKTWPK-WKGDAKKGCEAILQSLNLDKEEYQFGKTKIF  672


>CDD:462592 pfam08766, DEK_C, DEK C terminal domain.  DEK is a chromatin 
associated protein that is linked with cancers and autoimmune 
disease. This domain is found at the C terminal of DEK and 
is of clinical importance since it can reverse the characteristic 
abnormal DNA-mutagen sensitivity in fibroblasts from 
ataxia-telangiectasia (A-T) patients. The structure of this 
domain shows it to be homologous to the E2F/DP transcription 
factor family. This domain is also found in chitin synthase 
proteins and in protein phosphastases.
Length=54

 Score = 74.3 bits (184),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 0/54 (0%)

Query  1791  PSDDAILAEIREILRTADLMSVTKKSIKLELERRFGVNLDLKRPYINSATEAVL  1844
             P+D+ I   IREILRTADL +VTKK ++ +LE R GV+L  ++ +IN+  + +L
Sbjct  1     PTDEEIREAIREILRTADLETVTKKQVRKQLEERLGVDLSERKAFINALIDEIL  54


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 61.5 bits (150),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query  956   SAAELSSHNGKDGHSSFIAIRGVVFDLDKFMPGHYPHIVPESALKKYAGVDATGLFPVQ  1014
             +  ELS HNG      ++AI G V+D+ KF+  H P    E  +   AG DAT  F   
Sbjct  1     TLEELSKHNGDG--DCWVAINGKVYDVTKFLKEH-P--GGEDVILSAAGKDATDAFEAI  54



Lambda      K        H        a         alpha
   0.320    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2337642352


Query= TCONS_00012592

Length=1493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  864     0.0  
CDD:395017 pfam00063, Myosin_head, Myosin head (motor domain)         133     3e-32
CDD:462592 pfam08766, DEK_C, DEK C terminal domain. DEK is a chro...  73.6    9e-17
CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  61.5    3e-12


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 864 bits (2234),  Expect = 0.0, Method: Composition-based stats.
 Identities = 287/527 (54%), Positives = 375/527 (71%), Gaps = 18/527 (3%)

Query  854   CSIIVFKFLAALQFGRKNVPENLDKFIICQVPAYTEDEESLRRAIDSMARMRYDDKRKLL  913
              S I+ KF+AA   G K       K  IC V  Y+E EE LR  +DS+A   Y D  KLL
Sbjct  1     VSTIIHKFIAAQPLGTKRPFGFPLKHTICLVTCYSEGEEGLRTTLDSLATTDYPDSHKLL  60

Query  914   VVICDGMIIGQGNDRPTPRIVLDILG--VPESVDPEPLSFESLGEGQKQHNMGKVYSGLY  971
             +VICDGMI G GNDR TP IVLD++   V    DPEPLS+ ++  G K+HNM KVY+G Y
Sbjct  61    LVICDGMIKGSGNDRSTPDIVLDMMKDAVIPKEDPEPLSYVAVASGSKRHNMAKVYAGFY  120

Query  972   EVQG---------HIVPFLVIVKVGKPSEVS--RPGNRGKRDSQMVLMRFLNRVHYNLPM  1020
             E  G           VP +V+VK G PSE S  +PGNRGKRDSQ++LMRFL +VH++  M
Sbjct  121   EYDGDSHIPEEKQQRVPMIVVVKCGTPSEASEKKPGNRGKRDSQIILMRFLQKVHFDERM  180

Query  1021  SPMELEMHHQIRNVIGVNPTFYEFILQVDADTVVAPDSATRMVAAFLNDTRLIGVCGETA  1080
             +P+E E+ HQI NV GV+P FYE++L VDADT V PDS TRMVA  ++D  ++G+CGET 
Sbjct  181   TPLEYELFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETK  240

Query  1081  LTNAKNSAVTMIQVYEYYISHNLTKAFESLFGSVTCLPGCFTMYRIRSAETA----KPLF  1136
             + N + S VT IQV+EYYISH+L+KAFES+FG VTCLPGCF+MYRI++ +       P+ 
Sbjct  241   IANKRQSWVTAIQVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKGGDGYWVPIL  300

Query  1137  VSKEVVDAYAEIRVDTLHMKNLLHLGEDRYLTTLLLKHHSKYKTKYISSAKAWTIAPESW  1196
              S ++V+ Y+E  VDTLH KNLL LGEDRYLTTL+LK   K KT ++  A   TIAP+++
Sbjct  301   ASPDIVEHYSENVVDTLHKKNLLLLGEDRYLTTLMLKTFPKRKTVFVPQAVCKTIAPDTF  360

Query  1197  TVFLSQRRRWINSTVHNLIELIPMQQLCGFCCFSMRFVVFVDLLSTVIQPVTLAYIIYLI  1256
              V LSQRRRWINSTVHNL+EL+ ++ LCG  CFSM+FVVF++L+ TV+ P  +A+ +YLI
Sbjct  361   KVLLSQRRRWINSTVHNLMELVLVRDLCGTFCFSMQFVVFIELIGTVVLPAAIAFTVYLI  420

Query  1257  YWLVKDTSTIPYTSLILLAAIYGLQALIFIIR-RKWEMVGWMIVYLLALPVFSLALPLYS  1315
                +     +P   L+LLAAI GL A++ ++  RKW  +GWM+VYLLALP+++  LPLY+
Sbjct  421   VISILTPDPVPVIPLVLLAAILGLPAILILLTTRKWVYIGWMLVYLLALPIWNFVLPLYA  480

Query  1316  FWHMDDFTWGNTRIITGEKGRKVVISDEGKFDPASIPKKKWEEYQTE  1362
             FWH DDF+WGNTR++ GEKG+KV  +DEG+FDP+ IP K+WEE++ E
Sbjct  481   FWHFDDFSWGNTRVVAGEKGKKVHGTDEGEFDPSKIPMKRWEEFERE  527


>CDD:395017 pfam00063, Myosin_head, Myosin head (motor domain).  
Length=674

 Score = 133 bits (337),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 175/415 (42%), Gaps = 91/415 (22%)

Query  12   DELARTIYSLLVAYVIEAVNQRICAAEDSVANTISIVDFPGFAQACATGSTLDQLF-NNA  70
            D LA+ IYS L  ++++ +N+ +       A+ I ++D  GF           ++F  N+
Sbjct  333  DALAKAIYSRLFDWLVDRINKSLDVKTIEKASFIGVLDIYGF-----------EIFEKNS  381

Query  71   ATELLYNFC---LQSFFDRKADELE-----REEVSVPATSYFDNTDAVRGLLKHGNGLLS  122
              +L  N+    LQ FF+    +LE     RE +      + DN   +  + K   G+LS
Sbjct  382  FEQLCINYVNEKLQQFFNHHMFKLEQEEYVREGIEWTFIDFGDNQPCIDLIEKKPLGILS  441

Query  123  ILDDQTRR-GRTDNQLLESLRRRFENKNPTIIVEGSKRTSLISQNARSAFTVKHFAGEID  181
            +LD++      TD   L+ L   F +K+P       ++  L  +   + F +KH+AG+++
Sbjct  442  LLDEECLFPKATDQTFLDKLYSTF-SKHP-----HFQKPRLQGE---THFIIKHYAGDVE  492

Query  182  YSVNGLIEENGEFISGDLMRLMKSTKSDFVRELFGQAALQTVTHPKEKTAIMQAQVSSKP  241
            Y+V G +E+N + ++ DL+ L+KS+    + ELF                          
Sbjct  493  YNVEGFLEKNKDPLNDDLVSLLKSSSDPLLAELF--------------------------  526

Query  242  LRMPSMARRKTSPSSRLAFDAGDADEVESQAESIAKDSSSGRRKSAMLTSGIQGAAGQFL  301
                                  D +  ES A + +  S+  R K     +       QF 
Sbjct  527  ---------------------PDYETAESAAANESGKSTPKRTKKKRFIT----VGSQFK  561

Query  302  SSLDIVNKCLSSTNLNPYFIFCLKPNDRRIANQFDSKCVRAQVQMFGIAEISQRLRNADF  361
             SL  + K L+ST  NP++I C+KPN+++ A  FD+  V  Q++  G+ E   R+R A F
Sbjct  562  ESLGELMKTLNST--NPHYIRCIKPNEKKRAGVFDNSLVLHQLRCNGVLE-GIRIRRAGF  618

Query  362  SVFLPFAEF------LGLAEIGNIVVGSDKEKAEVVLDEKRWPGNEARVGSTGVF  410
               + F EF      L          G  K+  E +L        E + G T +F
Sbjct  619  PNRITFQEFVQRYRILAPKTWPK-WKGDAKKGCEAILQSLNLDKEEYQFGKTKIF  672


>CDD:462592 pfam08766, DEK_C, DEK C terminal domain.  DEK is a chromatin 
associated protein that is linked with cancers and autoimmune 
disease. This domain is found at the C terminal of DEK and 
is of clinical importance since it can reverse the characteristic 
abnormal DNA-mutagen sensitivity in fibroblasts from 
ataxia-telangiectasia (A-T) patients. The structure of this 
domain shows it to be homologous to the E2F/DP transcription 
factor family. This domain is also found in chitin synthase 
proteins and in protein phosphastases.
Length=54

 Score = 73.6 bits (182),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 0/54 (0%)

Query  1436  PSDDAILAEIREILRTADLMSVTKKSIKLELERRFGVNLDLKRPYINSATEAVL  1489
             P+D+ I   IREILRTADL +VTKK ++ +LE R GV+L  ++ +IN+  + +L
Sbjct  1     PTDEEIREAIREILRTADLETVTKKQVRKQLEERLGVDLSERKAFINALIDEIL  54


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 61.5 bits (150),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query  601  SAAELSSHNGKDGHSSFIAIRGVVFDLDKFMPGHYPHIVPESALKKYAGVDATGLFPVQ  659
            +  ELS HNG      ++AI G V+D+ KF+  H P    E  +   AG DAT  F   
Sbjct  1    TLEELSKHNGDG--DCWVAINGKVYDVTKFLKEH-P--GGEDVILSAAGKDATDAFEAI  54



Lambda      K        H        a         alpha
   0.321    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1891605028


Query= TCONS_00018393

Length=1498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  863     0.0  
CDD:395017 pfam00063, Myosin_head, Myosin head (motor domain)         133     3e-32
CDD:462592 pfam08766, DEK_C, DEK C terminal domain. DEK is a chro...  70.9    9e-16
CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  61.5    3e-12


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 863 bits (2232),  Expect = 0.0, Method: Composition-based stats.
 Identities = 287/527 (54%), Positives = 375/527 (71%), Gaps = 18/527 (3%)

Query  854   CSIIVFKFLAALQFGRKNVPENLDKFIICQVPAYTEDEESLRRAIDSMARMRYDDKRKLL  913
              S I+ KF+AA   G K       K  IC V  Y+E EE LR  +DS+A   Y D  KLL
Sbjct  1     VSTIIHKFIAAQPLGTKRPFGFPLKHTICLVTCYSEGEEGLRTTLDSLATTDYPDSHKLL  60

Query  914   VVICDGMIIGQGNDRPTPRIVLDILG--VPESVDPEPLSFESLGEGQKQHNMGKVYSGLY  971
             +VICDGMI G GNDR TP IVLD++   V    DPEPLS+ ++  G K+HNM KVY+G Y
Sbjct  61    LVICDGMIKGSGNDRSTPDIVLDMMKDAVIPKEDPEPLSYVAVASGSKRHNMAKVYAGFY  120

Query  972   EVQG---------HIVPFLVIVKVGKPSEVS--RPGNRGKRDSQMVLMRFLNRVHYNLPM  1020
             E  G           VP +V+VK G PSE S  +PGNRGKRDSQ++LMRFL +VH++  M
Sbjct  121   EYDGDSHIPEEKQQRVPMIVVVKCGTPSEASEKKPGNRGKRDSQIILMRFLQKVHFDERM  180

Query  1021  SPMELEMHHQIRNVIGVNPTFYEFILQVDADTVVAPDSATRMVAAFLNDTRLIGVCGETA  1080
             +P+E E+ HQI NV GV+P FYE++L VDADT V PDS TRMVA  ++D  ++G+CGET 
Sbjct  181   TPLEYELFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETK  240

Query  1081  LTNAKNSAVTMIQVYEYYISHNLTKAFESLFGSVTCLPGCFTMYRIRSAETA----KPLF  1136
             + N + S VT IQV+EYYISH+L+KAFES+FG VTCLPGCF+MYRI++ +       P+ 
Sbjct  241   IANKRQSWVTAIQVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKGGDGYWVPIL  300

Query  1137  VSKEVVDAYAEIRVDTLHMKNLLHLGEDRYLTTLLLKHHSKYKTKYISSAKAWTIAPESW  1196
              S ++V+ Y+E  VDTLH KNLL LGEDRYLTTL+LK   K KT ++  A   TIAP+++
Sbjct  301   ASPDIVEHYSENVVDTLHKKNLLLLGEDRYLTTLMLKTFPKRKTVFVPQAVCKTIAPDTF  360

Query  1197  TVFLSQRRRWINSTVHNLIELIPMQQLCGFCCFSMRFVVFVDLLSTVIQPVTLAYIIYLI  1256
              V LSQRRRWINSTVHNL+EL+ ++ LCG  CFSM+FVVF++L+ TV+ P  +A+ +YLI
Sbjct  361   KVLLSQRRRWINSTVHNLMELVLVRDLCGTFCFSMQFVVFIELIGTVVLPAAIAFTVYLI  420

Query  1257  YWLVKDTSTIPYTSLILLAAIYGLQALIFIIR-RKWEMVGWMIVYLLALPVFSLALPLYS  1315
                +     +P   L+LLAAI GL A++ ++  RKW  +GWM+VYLLALP+++  LPLY+
Sbjct  421   VISILTPDPVPVIPLVLLAAILGLPAILILLTTRKWVYIGWMLVYLLALPIWNFVLPLYA  480

Query  1316  FWHMDDFTWGNTRIITGEKGRKVVISDEGKFDPASIPKKKWEEYQTE  1362
             FWH DDF+WGNTR++ GEKG+KV  +DEG+FDP+ IP K+WEE++ E
Sbjct  481   FWHFDDFSWGNTRVVAGEKGKKVHGTDEGEFDPSKIPMKRWEEFERE  527


>CDD:395017 pfam00063, Myosin_head, Myosin head (motor domain).  
Length=674

 Score = 133 bits (337),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 175/415 (42%), Gaps = 91/415 (22%)

Query  12   DELARTIYSLLVAYVIEAVNQRICAAEDSVANTISIVDFPGFAQACATGSTLDQLF-NNA  70
            D LA+ IYS L  ++++ +N+ +       A+ I ++D  GF           ++F  N+
Sbjct  333  DALAKAIYSRLFDWLVDRINKSLDVKTIEKASFIGVLDIYGF-----------EIFEKNS  381

Query  71   ATELLYNFC---LQSFFDRKADELE-----REEVSVPATSYFDNTDAVRGLLKHGNGLLS  122
              +L  N+    LQ FF+    +LE     RE +      + DN   +  + K   G+LS
Sbjct  382  FEQLCINYVNEKLQQFFNHHMFKLEQEEYVREGIEWTFIDFGDNQPCIDLIEKKPLGILS  441

Query  123  ILDDQTRR-GRTDNQLLESLRRRFENKNPTIIVEGSKRTSLISQNARSAFTVKHFAGEID  181
            +LD++      TD   L+ L   F +K+P       ++  L  +   + F +KH+AG+++
Sbjct  442  LLDEECLFPKATDQTFLDKLYSTF-SKHP-----HFQKPRLQGE---THFIIKHYAGDVE  492

Query  182  YSVNGLIEENGEFISGDLMRLMKSTKSDFVRELFGQAALQTVTHPKEKTAIMQAQVSSKP  241
            Y+V G +E+N + ++ DL+ L+KS+    + ELF                          
Sbjct  493  YNVEGFLEKNKDPLNDDLVSLLKSSSDPLLAELF--------------------------  526

Query  242  LRMPSMARRKTSPSSRLAFDAGDADEVESQAESIAKDSSSGRRKSAMLTSGIQGAAGQFL  301
                                  D +  ES A + +  S+  R K     +       QF 
Sbjct  527  ---------------------PDYETAESAAANESGKSTPKRTKKKRFIT----VGSQFK  561

Query  302  SSLDIVNKCLSSTNLNPYFIFCLKPNDRRIANQFDSKCVRAQVQMFGIAEISQRLRNADF  361
             SL  + K L+ST  NP++I C+KPN+++ A  FD+  V  Q++  G+ E   R+R A F
Sbjct  562  ESLGELMKTLNST--NPHYIRCIKPNEKKRAGVFDNSLVLHQLRCNGVLE-GIRIRRAGF  618

Query  362  SVFLPFAEF------LGLAEIGNIVVGSDKEKAEVVLDEKRWPGNEARVGSTGVF  410
               + F EF      L          G  K+  E +L        E + G T +F
Sbjct  619  PNRITFQEFVQRYRILAPKTWPK-WKGDAKKGCEAILQSLNLDKEEYQFGKTKIF  672


>CDD:462592 pfam08766, DEK_C, DEK C terminal domain.  DEK is a chromatin 
associated protein that is linked with cancers and autoimmune 
disease. This domain is found at the C terminal of DEK and 
is of clinical importance since it can reverse the characteristic 
abnormal DNA-mutagen sensitivity in fibroblasts from 
ataxia-telangiectasia (A-T) patients. The structure of this 
domain shows it to be homologous to the E2F/DP transcription 
factor family. This domain is also found in chitin synthase 
proteins and in protein phosphastases.
Length=54

 Score = 70.9 bits (175),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 25/48 (52%), Positives = 36/48 (75%), Gaps = 0/48 (0%)

Query  1436  PSDDAILAEIREILRTADLMSVTKKSIKLELERRFGVNLDLKRPYINS  1483
             P+D+ I   IREILRTADL +VTKK ++ +LE R GV+L  ++ +IN+
Sbjct  1     PTDEEIREAIREILRTADLETVTKKQVRKQLEERLGVDLSERKAFINA  48


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 61.5 bits (150),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query  601  SAAELSSHNGKDGHSSFIAIRGVVFDLDKFMPGHYPHIVPESALKKYAGVDATGLFPVQ  659
            +  ELS HNG      ++AI G V+D+ KF+  H P    E  +   AG DAT  F   
Sbjct  1    TLEELSKHNGDG--DCWVAINGKVYDVTKFLKEH-P--GGEDVILSAAGKDATDAFEAI  54



Lambda      K        H        a         alpha
   0.321    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1898389838


Query= TCONS_00012593

Length=1853
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  868     0.0  
CDD:395017 pfam00063, Myosin_head, Myosin head (motor domain)         244     8e-69
CDD:462592 pfam08766, DEK_C, DEK C terminal domain. DEK is a chro...  71.3    8e-16
CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  61.5    4e-12


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 868 bits (2245),  Expect = 0.0, Method: Composition-based stats.
 Identities = 287/527 (54%), Positives = 375/527 (71%), Gaps = 18/527 (3%)

Query  1209  CSIIVFKFLAALQFGRKNVPENLDKFIICQVPAYTEDEESLRRAIDSMARMRYDDKRKLL  1268
              S I+ KF+AA   G K       K  IC V  Y+E EE LR  +DS+A   Y D  KLL
Sbjct  1     VSTIIHKFIAAQPLGTKRPFGFPLKHTICLVTCYSEGEEGLRTTLDSLATTDYPDSHKLL  60

Query  1269  VVICDGMIIGQGNDRPTPRIVLDILG--VPESVDPEPLSFESLGEGQKQHNMGKVYSGLY  1326
             +VICDGMI G GNDR TP IVLD++   V    DPEPLS+ ++  G K+HNM KVY+G Y
Sbjct  61    LVICDGMIKGSGNDRSTPDIVLDMMKDAVIPKEDPEPLSYVAVASGSKRHNMAKVYAGFY  120

Query  1327  EVQG---------HIVPFLVIVKVGKPSEVS--RPGNRGKRDSQMVLMRFLNRVHYNLPM  1375
             E  G           VP +V+VK G PSE S  +PGNRGKRDSQ++LMRFL +VH++  M
Sbjct  121   EYDGDSHIPEEKQQRVPMIVVVKCGTPSEASEKKPGNRGKRDSQIILMRFLQKVHFDERM  180

Query  1376  SPMELEMHHQIRNVIGVNPTFYEFILQVDADTVVAPDSATRMVAAFLNDTRLIGVCGETA  1435
             +P+E E+ HQI NV GV+P FYE++L VDADT V PDS TRMVA  ++D  ++G+CGET 
Sbjct  181   TPLEYELFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETK  240

Query  1436  LTNAKNSAVTMIQVYEYYISHNLTKAFESLFGSVTCLPGCFTMYRIRSAETA----KPLF  1491
             + N + S VT IQV+EYYISH+L+KAFES+FG VTCLPGCF+MYRI++ +       P+ 
Sbjct  241   IANKRQSWVTAIQVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKGGDGYWVPIL  300

Query  1492  VSKEVVDAYAEIRVDTLHMKNLLHLGEDRYLTTLLLKHHSKYKTKYISSAKAWTIAPESW  1551
              S ++V+ Y+E  VDTLH KNLL LGEDRYLTTL+LK   K KT ++  A   TIAP+++
Sbjct  301   ASPDIVEHYSENVVDTLHKKNLLLLGEDRYLTTLMLKTFPKRKTVFVPQAVCKTIAPDTF  360

Query  1552  TVFLSQRRRWINSTVHNLIELIPMQQLCGFCCFSMRFVVFVDLLSTVIQPVTLAYIIYLI  1611
              V LSQRRRWINSTVHNL+EL+ ++ LCG  CFSM+FVVF++L+ TV+ P  +A+ +YLI
Sbjct  361   KVLLSQRRRWINSTVHNLMELVLVRDLCGTFCFSMQFVVFIELIGTVVLPAAIAFTVYLI  420

Query  1612  YWLVKDTSTIPYTSLILLAAIYGLQALIFIIR-RKWEMVGWMIVYLLALPVFSLALPLYS  1670
                +     +P   L+LLAAI GL A++ ++  RKW  +GWM+VYLLALP+++  LPLY+
Sbjct  421   VISILTPDPVPVIPLVLLAAILGLPAILILLTTRKWVYIGWMLVYLLALPIWNFVLPLYA  480

Query  1671  FWHMDDFTWGNTRIITGEKGRKVVISDEGKFDPASIPKKKWEEYQTE  1717
             FWH DDF+WGNTR++ GEKG+KV  +DEG+FDP+ IP K+WEE++ E
Sbjct  481   FWHFDDFSWGNTRVVAGEKGKKVHGTDEGEFDPSKIPMKRWEEFERE  527


>CDD:395017 pfam00063, Myosin_head, Myosin head (motor domain).  
Length=674

 Score = 244 bits (625),  Expect = 8e-69, Method: Composition-based stats.
 Identities = 176/709 (25%), Positives = 299/709 (42%), Gaps = 131/709 (18%)

Query  81   LAKRAFTRLGARGENQAVVFLGESGSGKTTIRSHLLSAFLSFSST-------PLSSKLSY  133
            +A  A+  +    ENQ+++  GESG+GKT     ++    S S +        L  ++  
Sbjct  71   IADEAYRSMLQDKENQSILISGESGAGKTENTKKIMQYLASVSGSGSAGNVGRLEEQILQ  130

Query  134  AAFLFDTLTTTKSLTTQTASKAGLFLELQYDGSSSVNPTLIGGKIIDHRLERSRITSVPT  193
            +  + +     K++    +S+ G ++E+Q+D        ++GGKI  + LE+SR+     
Sbjct  131  SNPILEAFGNAKTVRNNNSSRFGKYIEIQFDAKGD----IVGGKIETYLLEKSRVVYQAE  186

Query  194  GERSFHVLYYLLAGTSPAEKAHLGFDKAVHVSTSSGAIGHKRWRYLGHPTQLKV-GVNDV  252
            GER++H+ Y LLAG S   K  L                 K + YL       + G++D 
Sbjct  187  GERNYHIFYQLLAGASAQLKKELRLTNP------------KDYHYLSQSGCYTIDGIDDS  234

Query  253  EGFQHFKTALRKLEFPRSEIAEICQILATILHIGQLEFASGQATTTHAEESGGYSHEGGE  312
            E F+    A+  L F   E   I +I+A ILH+G +EF           +          
Sbjct  235  EEFKITDKAMDILGFSDEEQMGIFRIVAAILHLGNIEFKKE------RNDEQA-------  281

Query  313  TVTIVKNKDVLSIIAAFLGLSVEDLENSFGYRTKTIHRERVTVMLDPKGARQNADELART  372
               +  + + L   A+ LG+   +LE +   R     RE V+   + + A    D LA+ 
Sbjct  282  ---VPDDTENLQKAASLLGIDSTELEKALCKRRIKTGRETVSKPQNVEQANYARDALAKA  338

Query  373  IYSLLVAYVIEAVNQRICAAEDSVANTISIVDFPGFAQACATGSTLDQLF-NNAATELLY  431
            IYS L  ++++ +N+ +       A+ I ++D  GF           ++F  N+  +L  
Sbjct  339  IYSRLFDWLVDRINKSLDVKTIEKASFIGVLDIYGF-----------EIFEKNSFEQLCI  387

Query  432  NFC---LQSFFDRKADELE-----REEVSVPATSYFDNTDAVRGLLKHGNGLLSILDDQT  483
            N+    LQ FF+    +LE     RE +      + DN   +  + K   G+LS+LD++ 
Sbjct  388  NYVNEKLQQFFNHHMFKLEQEEYVREGIEWTFIDFGDNQPCIDLIEKKPLGILSLLDEEC  447

Query  484  RR-GRTDNQLLESLRRRFENKNPTIIVEGSKRTSLISQNARSAFTVKHFAGEIDYSVNGL  542
                 TD   L+ L   F +K+P       ++  L  +   + F +KH+AG+++Y+V G 
Sbjct  448  LFPKATDQTFLDKLYSTF-SKHP-----HFQKPRLQGE---THFIIKHYAGDVEYNVEGF  498

Query  543  IEENGEFISGDLMRLMKSTKSDFVRELFGQAALQTVTHPKEKTAIMQAQVSSKPLRMPSM  602
            +E+N + ++ DL+ L+KS+    + ELF                                
Sbjct  499  LEKNKDPLNDDLVSLLKSSSDPLLAELF--------------------------------  526

Query  603  ARRKTSPSSRLAFDAGDADEVESQAESIAKDSSSGRRKSAMLTSGIQGAAGQFLSSLDIV  662
                            D +  ES A + +  S+  R K     +       QF  SL  +
Sbjct  527  ---------------PDYETAESAAANESGKSTPKRTKKKRFIT----VGSQFKESLGEL  567

Query  663  NKCLSSTNLNPYFIFCLKPNDRRIANQFDSKCVRAQVQMFGIAEISQRLRNADFSVFLPF  722
             K L+ST  NP++I C+KPN+++ A  FD+  V  Q++  G+ E   R+R A F   + F
Sbjct  568  MKTLNST--NPHYIRCIKPNEKKRAGVFDNSLVLHQLRCNGVLE-GIRIRRAGFPNRITF  624

Query  723  AEF------LGLAEIGNIVVGSDKEKAEVVLDEKRWPGNEARVGSTGVF  765
             EF      L          G  K+  E +L        E + G T +F
Sbjct  625  QEFVQRYRILAPKTWPK-WKGDAKKGCEAILQSLNLDKEEYQFGKTKIF  672


>CDD:462592 pfam08766, DEK_C, DEK C terminal domain.  DEK is a chromatin 
associated protein that is linked with cancers and autoimmune 
disease. This domain is found at the C terminal of DEK and 
is of clinical importance since it can reverse the characteristic 
abnormal DNA-mutagen sensitivity in fibroblasts from 
ataxia-telangiectasia (A-T) patients. The structure of this 
domain shows it to be homologous to the E2F/DP transcription 
factor family. This domain is also found in chitin synthase 
proteins and in protein phosphastases.
Length=54

 Score = 71.3 bits (176),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 25/48 (52%), Positives = 36/48 (75%), Gaps = 0/48 (0%)

Query  1791  PSDDAILAEIREILRTADLMSVTKKSIKLELERRFGVNLDLKRPYINS  1838
             P+D+ I   IREILRTADL +VTKK ++ +LE R GV+L  ++ +IN+
Sbjct  1     PTDEEIREAIREILRTADLETVTKKQVRKQLEERLGVDLSERKAFINA  48


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 61.5 bits (150),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query  956   SAAELSSHNGKDGHSSFIAIRGVVFDLDKFMPGHYPHIVPESALKKYAGVDATGLFPVQ  1014
             +  ELS HNG      ++AI G V+D+ KF+  H P    E  +   AG DAT  F   
Sbjct  1     TLEELSKHNGDG--DCWVAINGKVYDVTKFLKEH-P--GGEDVILSAAGKDATDAFEAI  54



Lambda      K        H        a         alpha
   0.320    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2344328972


Query= TCONS_00012594

Length=1493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  864     0.0  
CDD:395017 pfam00063, Myosin_head, Myosin head (motor domain)         133     3e-32
CDD:462592 pfam08766, DEK_C, DEK C terminal domain. DEK is a chro...  73.6    9e-17
CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  61.5    3e-12


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 864 bits (2234),  Expect = 0.0, Method: Composition-based stats.
 Identities = 287/527 (54%), Positives = 375/527 (71%), Gaps = 18/527 (3%)

Query  854   CSIIVFKFLAALQFGRKNVPENLDKFIICQVPAYTEDEESLRRAIDSMARMRYDDKRKLL  913
              S I+ KF+AA   G K       K  IC V  Y+E EE LR  +DS+A   Y D  KLL
Sbjct  1     VSTIIHKFIAAQPLGTKRPFGFPLKHTICLVTCYSEGEEGLRTTLDSLATTDYPDSHKLL  60

Query  914   VVICDGMIIGQGNDRPTPRIVLDILG--VPESVDPEPLSFESLGEGQKQHNMGKVYSGLY  971
             +VICDGMI G GNDR TP IVLD++   V    DPEPLS+ ++  G K+HNM KVY+G Y
Sbjct  61    LVICDGMIKGSGNDRSTPDIVLDMMKDAVIPKEDPEPLSYVAVASGSKRHNMAKVYAGFY  120

Query  972   EVQG---------HIVPFLVIVKVGKPSEVS--RPGNRGKRDSQMVLMRFLNRVHYNLPM  1020
             E  G           VP +V+VK G PSE S  +PGNRGKRDSQ++LMRFL +VH++  M
Sbjct  121   EYDGDSHIPEEKQQRVPMIVVVKCGTPSEASEKKPGNRGKRDSQIILMRFLQKVHFDERM  180

Query  1021  SPMELEMHHQIRNVIGVNPTFYEFILQVDADTVVAPDSATRMVAAFLNDTRLIGVCGETA  1080
             +P+E E+ HQI NV GV+P FYE++L VDADT V PDS TRMVA  ++D  ++G+CGET 
Sbjct  181   TPLEYELFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETK  240

Query  1081  LTNAKNSAVTMIQVYEYYISHNLTKAFESLFGSVTCLPGCFTMYRIRSAETA----KPLF  1136
             + N + S VT IQV+EYYISH+L+KAFES+FG VTCLPGCF+MYRI++ +       P+ 
Sbjct  241   IANKRQSWVTAIQVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKGGDGYWVPIL  300

Query  1137  VSKEVVDAYAEIRVDTLHMKNLLHLGEDRYLTTLLLKHHSKYKTKYISSAKAWTIAPESW  1196
              S ++V+ Y+E  VDTLH KNLL LGEDRYLTTL+LK   K KT ++  A   TIAP+++
Sbjct  301   ASPDIVEHYSENVVDTLHKKNLLLLGEDRYLTTLMLKTFPKRKTVFVPQAVCKTIAPDTF  360

Query  1197  TVFLSQRRRWINSTVHNLIELIPMQQLCGFCCFSMRFVVFVDLLSTVIQPVTLAYIIYLI  1256
              V LSQRRRWINSTVHNL+EL+ ++ LCG  CFSM+FVVF++L+ TV+ P  +A+ +YLI
Sbjct  361   KVLLSQRRRWINSTVHNLMELVLVRDLCGTFCFSMQFVVFIELIGTVVLPAAIAFTVYLI  420

Query  1257  YWLVKDTSTIPYTSLILLAAIYGLQALIFIIR-RKWEMVGWMIVYLLALPVFSLALPLYS  1315
                +     +P   L+LLAAI GL A++ ++  RKW  +GWM+VYLLALP+++  LPLY+
Sbjct  421   VISILTPDPVPVIPLVLLAAILGLPAILILLTTRKWVYIGWMLVYLLALPIWNFVLPLYA  480

Query  1316  FWHMDDFTWGNTRIITGEKGRKVVISDEGKFDPASIPKKKWEEYQTE  1362
             FWH DDF+WGNTR++ GEKG+KV  +DEG+FDP+ IP K+WEE++ E
Sbjct  481   FWHFDDFSWGNTRVVAGEKGKKVHGTDEGEFDPSKIPMKRWEEFERE  527


>CDD:395017 pfam00063, Myosin_head, Myosin head (motor domain).  
Length=674

 Score = 133 bits (337),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 175/415 (42%), Gaps = 91/415 (22%)

Query  12   DELARTIYSLLVAYVIEAVNQRICAAEDSVANTISIVDFPGFAQACATGSTLDQLF-NNA  70
            D LA+ IYS L  ++++ +N+ +       A+ I ++D  GF           ++F  N+
Sbjct  333  DALAKAIYSRLFDWLVDRINKSLDVKTIEKASFIGVLDIYGF-----------EIFEKNS  381

Query  71   ATELLYNFC---LQSFFDRKADELE-----REEVSVPATSYFDNTDAVRGLLKHGNGLLS  122
              +L  N+    LQ FF+    +LE     RE +      + DN   +  + K   G+LS
Sbjct  382  FEQLCINYVNEKLQQFFNHHMFKLEQEEYVREGIEWTFIDFGDNQPCIDLIEKKPLGILS  441

Query  123  ILDDQTRR-GRTDNQLLESLRRRFENKNPTIIVEGSKRTSLISQNARSAFTVKHFAGEID  181
            +LD++      TD   L+ L   F +K+P       ++  L  +   + F +KH+AG+++
Sbjct  442  LLDEECLFPKATDQTFLDKLYSTF-SKHP-----HFQKPRLQGE---THFIIKHYAGDVE  492

Query  182  YSVNGLIEENGEFISGDLMRLMKSTKSDFVRELFGQAALQTVTHPKEKTAIMQAQVSSKP  241
            Y+V G +E+N + ++ DL+ L+KS+    + ELF                          
Sbjct  493  YNVEGFLEKNKDPLNDDLVSLLKSSSDPLLAELF--------------------------  526

Query  242  LRMPSMARRKTSPSSRLAFDAGDADEVESQAESIAKDSSSGRRKSAMLTSGIQGAAGQFL  301
                                  D +  ES A + +  S+  R K     +       QF 
Sbjct  527  ---------------------PDYETAESAAANESGKSTPKRTKKKRFIT----VGSQFK  561

Query  302  SSLDIVNKCLSSTNLNPYFIFCLKPNDRRIANQFDSKCVRAQVQMFGIAEISQRLRNADF  361
             SL  + K L+ST  NP++I C+KPN+++ A  FD+  V  Q++  G+ E   R+R A F
Sbjct  562  ESLGELMKTLNST--NPHYIRCIKPNEKKRAGVFDNSLVLHQLRCNGVLE-GIRIRRAGF  618

Query  362  SVFLPFAEF------LGLAEIGNIVVGSDKEKAEVVLDEKRWPGNEARVGSTGVF  410
               + F EF      L          G  K+  E +L        E + G T +F
Sbjct  619  PNRITFQEFVQRYRILAPKTWPK-WKGDAKKGCEAILQSLNLDKEEYQFGKTKIF  672


>CDD:462592 pfam08766, DEK_C, DEK C terminal domain.  DEK is a chromatin 
associated protein that is linked with cancers and autoimmune 
disease. This domain is found at the C terminal of DEK and 
is of clinical importance since it can reverse the characteristic 
abnormal DNA-mutagen sensitivity in fibroblasts from 
ataxia-telangiectasia (A-T) patients. The structure of this 
domain shows it to be homologous to the E2F/DP transcription 
factor family. This domain is also found in chitin synthase 
proteins and in protein phosphastases.
Length=54

 Score = 73.6 bits (182),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 0/54 (0%)

Query  1436  PSDDAILAEIREILRTADLMSVTKKSIKLELERRFGVNLDLKRPYINSATEAVL  1489
             P+D+ I   IREILRTADL +VTKK ++ +LE R GV+L  ++ +IN+  + +L
Sbjct  1     PTDEEIREAIREILRTADLETVTKKQVRKQLEERLGVDLSERKAFINALIDEIL  54


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 61.5 bits (150),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query  601  SAAELSSHNGKDGHSSFIAIRGVVFDLDKFMPGHYPHIVPESALKKYAGVDATGLFPVQ  659
            +  ELS HNG      ++AI G V+D+ KF+  H P    E  +   AG DAT  F   
Sbjct  1    TLEELSKHNGDG--DCWVAINGKVYDVTKFLKEH-P--GGEDVILSAAGKDATDAFEAI  54



Lambda      K        H        a         alpha
   0.321    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1891605028


Query= TCONS_00012595

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  203     3e-61
CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF196...  145     1e-42


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 203 bits (519),  Expect = 3e-61, Method: Composition-based stats.
 Identities = 88/343 (26%), Positives = 137/343 (40%), Gaps = 53/343 (15%)

Query  60   GSWTGIIDKLDYIQDLGFTAIQISPVVENIPDNTKYGEAYHGYWPKNLYALNEHFGTADE  119
            G   GII+KLDY+++LG TAI +SP+           +A HGY   + Y ++ H+GT ++
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLSPI-------FDSPQADHGYDIADYYKIDPHYGTMED  53

Query  120  LRRLVSEVHRRDMYLIVDVVINDMAQAVNG---SMKDDPSLKIDYSQLFPFDDEKYYHPF  176
             + L+S+ H R + +I+D+V+N  +        S     +   DY   F         P 
Sbjct  54   FKELISKAHERGIKVILDLVVNHTSDEHAWFQESRSSKDNPYRDYY--FWRPGGGPIPPN  111

Query  177  C--AITDWTDPKIYKNCWFAVE------TVALPDLNTGDASVATMIGDWIKQFVGNYSID  228
               +    +    +       E          PDLN  +  V   + D + +F  +  ID
Sbjct  112  NWRSYFGGSA---WTYDEKGQEYYLHLFVAGQPDLNWENPEVRNELYD-VVRFWLDKGID  167

Query  229  GLRIDAALHMDDD----------YVEGFSKAAG--------LFTIGEVSNGDTSLVCKYE  270
            G RID   H+             +   F++A          + T+GEV +GD      Y 
Sbjct  168  GFRIDVVKHISKVPGLPFENNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDGEWARVYT  227

Query  271  NL----VSSVLNYPLYYALIQAF-----TAGNMLGLAESIRAVQKDCKDFALLE-TFVEN  320
                  +    N+P     ++ F        +   L E I        D      TF+ N
Sbjct  228  TEARMELEMGFNFPHNDVALKPFIKWDLAPISARKLKEMITDWLDALPDTNGWNFTFLGN  287

Query  321  HDLPRFASLT-NDTTLAKNAMAFNILSDGIPQVYQGQEQHMSG  362
            HD PRF S   +D   AK    F +   G P +YQG+E  M+G
Sbjct  288  HDQPRFLSRFGDDRASAKLLAVFLLTLRGTPYIYQGEEIGMTG  330


>CDD:370390 pfam09260, DUF1966, Domain of unknown function (DUF1966).  This 
domain is found in various fungal alpha-amylase proteins. 
Its exact function has not, as yet, been defined.
Length=90

 Score = 145 bits (369),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 51/90 (57%), Positives = 64/90 (71%), Gaps = 1/90 (1%)

Query  411  ELHSDNSTYATRKGPEGVQAVSVFSNQGTNGGKYQLALKD-AYAPGTEVMEVLGCSKLTT  469
             ++SD+ST A RKGPEG Q V+V SNQG++GG Y L+L    Y  GT V+EVL C+ +T 
Sbjct  1    PIYSDSSTLAMRKGPEGSQVVTVLSNQGSSGGSYTLSLPGTGYNAGTSVVEVLSCTTVTV  60

Query  470  DDVGNLTVEMDAGEPRIFFPVAQLKNSGLC  499
            D  GNLTV MD+GEPR+ FP + L  SGLC
Sbjct  61   DSSGNLTVPMDSGEPRVLFPASLLSGSGLC  90



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0706    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00018394

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  182     3e-55


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 182 bits (464),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 133/342 (39%), Gaps = 56/342 (16%)

Query  60   GSWTGIIDKLDYIQDLGFTAIQISPVVENIPDNTKYGEAYHGYWPKNLYALNEHFGTADE  119
            G   GII+KLDY+++LG TAI +SP+           +A HGY   + Y ++ H+GT ++
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLSPI-------FDSPQADHGYDIADYYKIDPHYGTMED  53

Query  120  LRRLVSEVHRRDMYLIVDVVINDMAQAVNG---SMKDDPSLKIDYSQLFPFDDEKYYHPF  176
             + L+S+ H R + +I+D+V+N  +        S     +   DY   F         P 
Sbjct  54   FKELISKAHERGIKVILDLVVNHTSDEHAWFQESRSSKDNPYRDYY--FWRPGGGPIPPN  111

Query  177  C--AITDWTDPKIYKNCWFAVE------TVALPDLNTGDASVATMIGDWIKQFVGNYSID  228
               +    +    +       E          PDLN  +  V   + D + +F  +  ID
Sbjct  112  NWRSYFGGSA---WTYDEKGQEYYLHLFVAGQPDLNWENPEVRNELYD-VVRFWLDKGID  167

Query  229  GLRIDAALHMD----------DDYVEGFSKAAG--------LFTIGEVSNGDTSLVCKYE  270
            G RID   H+             +   F++A          + T+GEV +GD      Y 
Sbjct  168  GFRIDVVKHISKVPGLPFENNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDGEWARVYT  227

Query  271  NL----VSSVLNYPLYYALIQAF-----TAGNMLGLAESIRAVQKDCKDFALLE-TFVEN  320
                  +    N+P     ++ F        +   L E I        D      TF+ N
Sbjct  228  TEARMELEMGFNFPHNDVALKPFIKWDLAPISARKLKEMITDWLDALPDTNGWNFTFLGN  287

Query  321  HDLPRFASLT-NDTTLAKNAMAFNILSDGIP---QGTFLDMT  358
            HD PRF S   +D   AK    F +   G P   QG  + MT
Sbjct  288  HDQPRFLSRFGDDRASAKLLAVFLLTLRGTPYIYQGEEIGMT  329



Lambda      K        H        a         alpha
   0.320    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00012596

Length=819


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1039312136


Query= TCONS_00012597

Length=1005


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1287031284


Query= TCONS_00018395

Length=839


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1068022416


Query= TCONS_00018397

Length=720


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 910925152


Query= TCONS_00018396

Length=839


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1068022416


Query= TCONS_00012599

Length=1005


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1287031284


Query= TCONS_00012598

Length=552


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 687436880


Query= TCONS_00018398

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00012600

Length=569


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 712842156


Query= TCONS_00012601

Length=817


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1052074896


Query= TCONS_00018399

Length=739


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 938573040


Query= TCONS_00012602

Length=3184
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466562 pfam20413, Kiaa1109_N, Kiaa1109 N-terminal region. Thi...  1139    0.0  


>CDD:466562 pfam20413, Kiaa1109_N, Kiaa1109 N-terminal region.  This entry 
represents a long uncharacterized region found at the N-terminus 
of a group of very long eukaryotic proteins. It is found 
in the human protein Kiaa1109.
Length=976

 Score = 1139 bits (2949),  Expect = 0.0, Method: Composition-based stats.
 Identities = 435/1076 (40%), Positives = 591/1076 (55%), Gaps = 122/1076 (11%)

Query  40    YFNRLFATLLSYAIRAYTWHYYRAYVDIHALQISLLGGRIFWKGIRYHGVNETIFVHGGF  99
             YFNRLF  +LS+ +R Y WH Y+ Y+DI +LQ SLLGGRIF+K +RYH  N+TI +  G+
Sbjct  1     YFNRLFGFILSFILRRYLWHRYKVYIDIGSLQFSLLGGRIFFKDVRYHTENQTIRIQDGY  60

Query  100   ITWHYWKRTVRHTDLSLLSSSNERTPAGSQRPDTQSSNLAGRDNGEGEQGGLKEADNFPC  159
             ITW YW R VR                     D ++S L                   PC
Sbjct  61    ITWRYWLRRVRKAKEE----------------DEKNSKL-------------------PC  85

Query  160   RITIQFYGLEWFIYNRTPAYDSILAGFGQ--PIAGDNPTSPPSSTKPQGTGRDSSEPQLK  217
             R+++   GLEWF+YNRTPAYD+IL  FG+      D  +S PSS+    +   SS     
Sbjct  86    RLSLSLNGLEWFVYNRTPAYDNILELFGKDDKSNPDEDSSSPSSSDSSSSKSSSSSSASS  145

Query  218   KTRQENDSEERGSRNVAECSQELGESLSRLLRLLPLKIACDKGAIVIGNENTRSVLTTTF  277
              +   + +    +           +S    L LLP+KI   KGAIV GNE T S+L  +F
Sbjct  146   SSSTSSPTTTSKA-------ISWSKSQLPSLDLLPIKIEISKGAIVFGNELTPSILVASF  198

Query  278   DSGTGLIEACNAG-PYDLYRQVFSFQINHPVIQMRPNPDYKQSQLAAADGLSSKNEDKTG  336
             +S TG  +   +    DLY+ V  F+  +  + ++PNPDYK+ QL A + +         
Sbjct  199   ESATGTYDTKPSSSKLDLYKHVLKFKFENFRVMLKPNPDYKEPQLEAGERI---------  249

Query  337   RQRRRDTIFNYQFQKRRAWHSIRDLIPYFQTSVESFHNHNKSINTPRNQTGLRNDA--HW  394
                          ++R+ WH +R L P +++S+ S  +       PR     R DA   W
Sbjct  250   -------------RERKLWHKLRKLSPLWRSSLLSLRDEP-----PRTMGEKRKDAPPAW  291

Query  395   IGLSRYLDDSTQDDHEEWHSVEYGRFSTLVDSPSMAISYYWDIPGCVVSHRDPVKMSTSA  454
              GLSRY DD  QDDH+EW SVEY + ST++DSP + ++YY+D+PG +V   +P  +  S 
Sbjct  292   KGLSRY-DDEDQDDHDEWSSVEYAKGSTILDSPDVDLTYYYDVPG-LVPE-EPESVEGSE  348

Query  455   ASSDINGAPPPEWGIDIKLDGGTINYGPWADRERVGLQNVFFPNTYRSSQPSEPLAPGDL  514
             +    NG  PPEWGID+ + GGTINYGPWADR+R  LQ  FFP  YR + P++ L PG L
Sbjct  349   SPDIGNGDLPPEWGIDLVIKGGTINYGPWADRQRAELQKFFFPPDYRDAVPTKKLKPGQL  408

Query  515   RRNTVFKMRLEMSQETMLRIPTREPSKDWLWKGRADAIRGATKLKKQQKRRPSRPAEGDK  574
             R  T FK+ +E+  +  LRIP REPSKDW W  R    R                     
Sbjct  409   RIYTAFKLFIELRDDATLRIPFREPSKDWQWLKRYKETR---------------------  447

Query  575   SNLGPDIRPFGWLSLRVAGDSTVTYSMDMVASTTKGFNNLLELDLRDSRLSSSVNHALLW  634
                    RPFGWL L+V   ST++Y++ MVA T  G++N LE+ L    +++SVNH LL 
Sbjct  448   ----DRKRPFGWLHLKVGKGSTISYTIPMVA-TEDGYSNTLEVQLLHVEITTSVNHRLLL  502

Query  635   QCPRQLVTCDLSNPLSWNNLRTWTFDVESHNMELFLLRDHIFLLTDLVSDWASGPPQEYF  694
             +     + CDLS PL WN L+TWTFD+ S   ELFLLRDH  L TDL++DW+SGPP +Y+
Sbjct  503   KAETLRIDCDLSYPLKWNALQTWTFDITSTKAELFLLRDHKNLFTDLINDWSSGPPSDYY  562

Query  695   TFVPFTYTLNLSFVDFKLFVNVNDLNIISNPSDLDDNRMLVIKGKKLASDVLIPLTTYKP  754
              FVPFTY  NL   +F+L++NVND NII NP D D+N  L + G+ L  D  IP   ++P
Sbjct  563   LFVPFTYKFNLDLKNFELYLNVNDHNIIDNPLDFDENAFLSLCGESLDLDFTIPFDDFRP  622

Query  755   EQSAVNFNVYLDSGGIDFLSPQWDTLHTFLQD-QSIATLDGLSLRGSYNYYLSTAPDLTD  813
             E + + F++   +  +    P+W+TL TFL+    +      +L GSY Y+    PD  D
Sbjct  623   ESTTIPFDIEAPNFDLRLSLPEWNTLRTFLKGWVEVGRSPNFTLSGSYTYHPEVDPDNVD  682

Query  814   TLLLSINGVSPKLYLYGFLIKSFMTIRENYFGDEMHFKTLEEFQEL-------AYSEERV  866
             TL L + G    L LYGFLI+  M ++ENYFG+  HFKTLEE+QE               
Sbjct  683   TLSLDLEGGDSVLKLYGFLIRYLMNLKENYFGEFQHFKTLEEYQEKRRKSGLPPGDPVEK  742

Query  867   NFHNGINPNRKSNDLDVIVHVTVDDACALLPENMYDRLKCVRLTTPSLEVDLRFTNYYMD  926
              F       RKSN LDVI+  +V D   +LP N+Y    CV L    LEVDLRFTNYYMD
Sbjct  743   KFD-----PRKSNPLDVILSFSVHDGLLVLPANLYSCDPCVFLEFLELEVDLRFTNYYMD  797

Query  927   LQFSISPLRAAM----QVHRVEGPASISN--TQLFIDGAFIHGHRLFGLPPSEPTYVCNW  980
             LQ ++SP+  ++       R    + +++    LFIDG  + GHR+FG PP EPTY C W
Sbjct  798   LQLNLSPISLSLEDSCDEDRPSSSSHLTDGKPHLFIDGLQVRGHRMFGPPPEEPTYACLW  857

Query  981   DFEVGQIFGECSAEFLGCLAAALQSFDQSFDNEENALPPLVPIALHDVTFLRAKIQPIHI  1040
             D +VG I GE +  FL  LA+AL++F   FD+ ENALP        D TFLR  +  + +
Sbjct  858   DIDVGDITGELTPPFLKSLASALEAFGFGFDDSENALPEYETPEDLDYTFLRLSVDSVDL  917

Query  1041  AVLSDQAALILSSGLITTKFNDWANASFSKRMSLLVPDLSIAAVNYRDIDLKGSSS  1096
              ++   +AL LS   I   FND AN  +SKR+SLL+PD+++  ++        S  
Sbjct  918   KLVEGGSALNLSLDPIRLSFNDLANERYSKRLSLLIPDITLKQLDSSSASRSSSPW  973



Lambda      K        H        a         alpha
   0.318    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3877017760


Query= TCONS_00018400

Length=2875
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466562 pfam20413, Kiaa1109_N, Kiaa1109 N-terminal region. Thi...  895     0.0  


>CDD:466562 pfam20413, Kiaa1109_N, Kiaa1109 N-terminal region.  This entry 
represents a long uncharacterized region found at the N-terminus 
of a group of very long eukaryotic proteins. It is found 
in the human protein Kiaa1109.
Length=976

 Score = 895 bits (2316),  Expect = 0.0, Method: Composition-based stats.
 Identities = 336/803 (42%), Positives = 455/803 (57%), Gaps = 77/803 (10%)

Query  1    MRPNPDYKQSQLAAADGLSSKNEDKTGRQRRRDTIFNYQFQKRRAWHSIRDLIPYFQTSV  60
            ++PNPDYK+ QL A + +                      ++R+ WH +R L P +++S+
Sbjct  232  LKPNPDYKEPQLEAGERI----------------------RERKLWHKLRKLSPLWRSSL  269

Query  61   ESFHNHNKSINTPRNQTGLRNDA--HWIGLSRYLDDSTQDDHEEWHSVEYGRFSTLVDSP  118
             S  +       PR     R DA   W GLSRY DD  QDDH+EW SVEY + ST++DSP
Sbjct  270  LSLRDEP-----PRTMGEKRKDAPPAWKGLSRY-DDEDQDDHDEWSSVEYAKGSTILDSP  323

Query  119  SMAISYYWDIPGCVVSHRDPVKMSTSAASSDINGAPPPEWGIDIKLDGGTINYGPWADRE  178
             + ++YY+D+PG +V   +P  +  S +    NG  PPEWGID+ + GGTINYGPWADR+
Sbjct  324  DVDLTYYYDVPG-LVPE-EPESVEGSESPDIGNGDLPPEWGIDLVIKGGTINYGPWADRQ  381

Query  179  RVGLQNVFFPNTYRSSQPSEPLAPGDLRRNTVFKMRLEMSQETMLRIPTREPSKDWLWKG  238
            R  LQ  FFP  YR + P++ L PG LR  T FK+ +E+  +  LRIP REPSKDW W  
Sbjct  382  RAELQKFFFPPDYRDAVPTKKLKPGQLRIYTAFKLFIELRDDATLRIPFREPSKDWQWLK  441

Query  239  RADAIRGATKLKKQQKRRPSRPAEGDKSNLGPDIRPFGWLSLRVAGDSTVTYSMDMVAST  298
            R    R                            RPFGWL L+V   ST++Y++ MVA T
Sbjct  442  RYKETR-------------------------DRKRPFGWLHLKVGKGSTISYTIPMVA-T  475

Query  299  TKGFNNLLELDLRDSRLSSSVNHALLWQCPRQLVTCDLSNPLSWNNLRTWTFDVESHNME  358
              G++N LE+ L    +++SVNH LL +     + CDLS PL WN L+TWTFD+ S   E
Sbjct  476  EDGYSNTLEVQLLHVEITTSVNHRLLLKAETLRIDCDLSYPLKWNALQTWTFDITSTKAE  535

Query  359  LFLLRDHIFLLTDLVSDWASGPPQEYFTFVPFTYTLNLSFVDFKLFVNVNDLNIISNPSD  418
            LFLLRDH  L TDL++DW+SGPP +Y+ FVPFTY  NL   +F+L++NVND NII NP D
Sbjct  536  LFLLRDHKNLFTDLINDWSSGPPSDYYLFVPFTYKFNLDLKNFELYLNVNDHNIIDNPLD  595

Query  419  LDDNRMLVIKGKKLASDVLIPLTTYKPEQSAVNFNVYLDSGGIDFLSPQWDTLHTFLQD-  477
             D+N  L + G+ L  D  IP   ++PE + + F++   +  +    P+W+TL TFL+  
Sbjct  596  FDENAFLSLCGESLDLDFTIPFDDFRPESTTIPFDIEAPNFDLRLSLPEWNTLRTFLKGW  655

Query  478  QSIATLDGLSLRGSYNYYLSTAPDLTDTLLLSINGVSPKLYLYGFLIKSFMTIRENYFGD  537
              +      +L GSY Y+    PD  DTL L + G    L LYGFLI+  M ++ENYFG+
Sbjct  656  VEVGRSPNFTLSGSYTYHPEVDPDNVDTLSLDLEGGDSVLKLYGFLIRYLMNLKENYFGE  715

Query  538  EMHFKTLEEFQEL-------AYSEERVNFHNGINPNRKSNDLDVIVHVTVDDACALLPEN  590
              HFKTLEE+QE                F       RKSN LDVI+  +V D   +LP N
Sbjct  716  FQHFKTLEEYQEKRRKSGLPPGDPVEKKFD-----PRKSNPLDVILSFSVHDGLLVLPAN  770

Query  591  MYDRLKCVRLTTPSLEVDLRFTNYYMDLQFSISPLRAAM----QVHRVEGPASISN--TQ  644
            +Y    CV L    LEVDLRFTNYYMDLQ ++SP+  ++       R    + +++    
Sbjct  771  LYSCDPCVFLEFLELEVDLRFTNYYMDLQLNLSPISLSLEDSCDEDRPSSSSHLTDGKPH  830

Query  645  LFIDGAFIHGHRLFGLPPSEPTYVCNWDFEVGQIFGECSAEFLGCLAAALQSFDQSFDNE  704
            LFIDG  + GHR+FG PP EPTY C WD +VG I GE +  FL  LA+AL++F   FD+ 
Sbjct  831  LFIDGLQVRGHRMFGPPPEEPTYACLWDIDVGDITGELTPPFLKSLASALEAFGFGFDDS  890

Query  705  ENALPPLVPIALHDVTFLRAKIQPIHIAVLSDQAALILSSGLITTKFNDWANASFSKRMS  764
            ENALP        D TFLR  +  + + ++   +AL LS   I   FND AN  +SKR+S
Sbjct  891  ENALPEYETPEDLDYTFLRLSVDSVDLKLVEGGSALNLSLDPIRLSFNDLANERYSKRLS  950

Query  765  LLVPDLSIAAVNYRDIDLKGSSS  787
            LL+PD+++  ++        S  
Sbjct  951  LLIPDITLKQLDSSSASRSSSPW  973



Lambda      K        H        a         alpha
   0.317    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3543752520


Query= TCONS_00012603

Length=2875
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466562 pfam20413, Kiaa1109_N, Kiaa1109 N-terminal region. Thi...  895     0.0  


>CDD:466562 pfam20413, Kiaa1109_N, Kiaa1109 N-terminal region.  This entry 
represents a long uncharacterized region found at the N-terminus 
of a group of very long eukaryotic proteins. It is found 
in the human protein Kiaa1109.
Length=976

 Score = 895 bits (2316),  Expect = 0.0, Method: Composition-based stats.
 Identities = 336/803 (42%), Positives = 455/803 (57%), Gaps = 77/803 (10%)

Query  1    MRPNPDYKQSQLAAADGLSSKNEDKTGRQRRRDTIFNYQFQKRRAWHSIRDLIPYFQTSV  60
            ++PNPDYK+ QL A + +                      ++R+ WH +R L P +++S+
Sbjct  232  LKPNPDYKEPQLEAGERI----------------------RERKLWHKLRKLSPLWRSSL  269

Query  61   ESFHNHNKSINTPRNQTGLRNDA--HWIGLSRYLDDSTQDDHEEWHSVEYGRFSTLVDSP  118
             S  +       PR     R DA   W GLSRY DD  QDDH+EW SVEY + ST++DSP
Sbjct  270  LSLRDEP-----PRTMGEKRKDAPPAWKGLSRY-DDEDQDDHDEWSSVEYAKGSTILDSP  323

Query  119  SMAISYYWDIPGCVVSHRDPVKMSTSAASSDINGAPPPEWGIDIKLDGGTINYGPWADRE  178
             + ++YY+D+PG +V   +P  +  S +    NG  PPEWGID+ + GGTINYGPWADR+
Sbjct  324  DVDLTYYYDVPG-LVPE-EPESVEGSESPDIGNGDLPPEWGIDLVIKGGTINYGPWADRQ  381

Query  179  RVGLQNVFFPNTYRSSQPSEPLAPGDLRRNTVFKMRLEMSQETMLRIPTREPSKDWLWKG  238
            R  LQ  FFP  YR + P++ L PG LR  T FK+ +E+  +  LRIP REPSKDW W  
Sbjct  382  RAELQKFFFPPDYRDAVPTKKLKPGQLRIYTAFKLFIELRDDATLRIPFREPSKDWQWLK  441

Query  239  RADAIRGATKLKKQQKRRPSRPAEGDKSNLGPDIRPFGWLSLRVAGDSTVTYSMDMVAST  298
            R    R                            RPFGWL L+V   ST++Y++ MVA T
Sbjct  442  RYKETR-------------------------DRKRPFGWLHLKVGKGSTISYTIPMVA-T  475

Query  299  TKGFNNLLELDLRDSRLSSSVNHALLWQCPRQLVTCDLSNPLSWNNLRTWTFDVESHNME  358
              G++N LE+ L    +++SVNH LL +     + CDLS PL WN L+TWTFD+ S   E
Sbjct  476  EDGYSNTLEVQLLHVEITTSVNHRLLLKAETLRIDCDLSYPLKWNALQTWTFDITSTKAE  535

Query  359  LFLLRDHIFLLTDLVSDWASGPPQEYFTFVPFTYTLNLSFVDFKLFVNVNDLNIISNPSD  418
            LFLLRDH  L TDL++DW+SGPP +Y+ FVPFTY  NL   +F+L++NVND NII NP D
Sbjct  536  LFLLRDHKNLFTDLINDWSSGPPSDYYLFVPFTYKFNLDLKNFELYLNVNDHNIIDNPLD  595

Query  419  LDDNRMLVIKGKKLASDVLIPLTTYKPEQSAVNFNVYLDSGGIDFLSPQWDTLHTFLQD-  477
             D+N  L + G+ L  D  IP   ++PE + + F++   +  +    P+W+TL TFL+  
Sbjct  596  FDENAFLSLCGESLDLDFTIPFDDFRPESTTIPFDIEAPNFDLRLSLPEWNTLRTFLKGW  655

Query  478  QSIATLDGLSLRGSYNYYLSTAPDLTDTLLLSINGVSPKLYLYGFLIKSFMTIRENYFGD  537
              +      +L GSY Y+    PD  DTL L + G    L LYGFLI+  M ++ENYFG+
Sbjct  656  VEVGRSPNFTLSGSYTYHPEVDPDNVDTLSLDLEGGDSVLKLYGFLIRYLMNLKENYFGE  715

Query  538  EMHFKTLEEFQEL-------AYSEERVNFHNGINPNRKSNDLDVIVHVTVDDACALLPEN  590
              HFKTLEE+QE                F       RKSN LDVI+  +V D   +LP N
Sbjct  716  FQHFKTLEEYQEKRRKSGLPPGDPVEKKFD-----PRKSNPLDVILSFSVHDGLLVLPAN  770

Query  591  MYDRLKCVRLTTPSLEVDLRFTNYYMDLQFSISPLRAAM----QVHRVEGPASISN--TQ  644
            +Y    CV L    LEVDLRFTNYYMDLQ ++SP+  ++       R    + +++    
Sbjct  771  LYSCDPCVFLEFLELEVDLRFTNYYMDLQLNLSPISLSLEDSCDEDRPSSSSHLTDGKPH  830

Query  645  LFIDGAFIHGHRLFGLPPSEPTYVCNWDFEVGQIFGECSAEFLGCLAAALQSFDQSFDNE  704
            LFIDG  + GHR+FG PP EPTY C WD +VG I GE +  FL  LA+AL++F   FD+ 
Sbjct  831  LFIDGLQVRGHRMFGPPPEEPTYACLWDIDVGDITGELTPPFLKSLASALEAFGFGFDDS  890

Query  705  ENALPPLVPIALHDVTFLRAKIQPIHIAVLSDQAALILSSGLITTKFNDWANASFSKRMS  764
            ENALP        D TFLR  +  + + ++   +AL LS   I   FND AN  +SKR+S
Sbjct  891  ENALPEYETPEDLDYTFLRLSVDSVDLKLVEGGSALNLSLDPIRLSFNDLANERYSKRLS  950

Query  765  LLVPDLSIAAVNYRDIDLKGSSS  787
            LL+PD+++  ++        S  
Sbjct  951  LLIPDITLKQLDSSSASRSSSPW  973



Lambda      K        H        a         alpha
   0.317    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3543752520


Query= TCONS_00012604

Length=3190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466562 pfam20413, Kiaa1109_N, Kiaa1109 N-terminal region. Thi...  1140    0.0  


>CDD:466562 pfam20413, Kiaa1109_N, Kiaa1109 N-terminal region.  This entry 
represents a long uncharacterized region found at the N-terminus 
of a group of very long eukaryotic proteins. It is found 
in the human protein Kiaa1109.
Length=976

 Score = 1140 bits (2950),  Expect = 0.0, Method: Composition-based stats.
 Identities = 435/1076 (40%), Positives = 591/1076 (55%), Gaps = 122/1076 (11%)

Query  46    YFNRLFATLLSYAIRAYTWHYYRAYVDIHALQISLLGGRIFWKGIRYHGVNETIFVHGGF  105
             YFNRLF  +LS+ +R Y WH Y+ Y+DI +LQ SLLGGRIF+K +RYH  N+TI +  G+
Sbjct  1     YFNRLFGFILSFILRRYLWHRYKVYIDIGSLQFSLLGGRIFFKDVRYHTENQTIRIQDGY  60

Query  106   ITWHYWKRTVRHTDLSLLSSSNERTPAGSQRPDTQSSNLAGRDNGEGEQGGLKEADNFPC  165
             ITW YW R VR                     D ++S L                   PC
Sbjct  61    ITWRYWLRRVRKAKEE----------------DEKNSKL-------------------PC  85

Query  166   RITIQFYGLEWFIYNRTPAYDSILAGFGQ--PIAGDNPTSPPSSTKPQGTGRDSSEPQLK  223
             R+++   GLEWF+YNRTPAYD+IL  FG+      D  +S PSS+    +   SS     
Sbjct  86    RLSLSLNGLEWFVYNRTPAYDNILELFGKDDKSNPDEDSSSPSSSDSSSSKSSSSSSASS  145

Query  224   KTRQENDSEERGSRNVAECSQELGESLSRLLRLLPLKIACDKGAIVIGNENTRSVLTTTF  283
              +   + +    +           +S    L LLP+KI   KGAIV GNE T S+L  +F
Sbjct  146   SSSTSSPTTTSKA-------ISWSKSQLPSLDLLPIKIEISKGAIVFGNELTPSILVASF  198

Query  284   DSGTGLIEACNAG-PYDLYRQVFSFQINHPVIQMRPNPDYKQSQLAAADGLSSKNEDKTG  342
             +S TG  +   +    DLY+ V  F+  +  + ++PNPDYK+ QL A + +         
Sbjct  199   ESATGTYDTKPSSSKLDLYKHVLKFKFENFRVMLKPNPDYKEPQLEAGERI---------  249

Query  343   RQRRRDTIFNYQFQKRRAWHSIRDLIPYFQTSVESFHNHNKSINTPRNQTGLRNDA--HW  400
                          ++R+ WH +R L P +++S+ S  +       PR     R DA   W
Sbjct  250   -------------RERKLWHKLRKLSPLWRSSLLSLRDEP-----PRTMGEKRKDAPPAW  291

Query  401   IGLSRYLDDSTQDDHEEWHSVEYGRFSTLVDSPSMAISYYWDIPGCVVSHRDPVKMSTSA  460
              GLSRY DD  QDDH+EW SVEY + ST++DSP + ++YY+D+PG +V   +P  +  S 
Sbjct  292   KGLSRY-DDEDQDDHDEWSSVEYAKGSTILDSPDVDLTYYYDVPG-LVPE-EPESVEGSE  348

Query  461   ASSDINGAPPPEWGIDIKLDGGTINYGPWADRERVGLQNVFFPNTYRSSQPSEPLAPGDL  520
             +    NG  PPEWGID+ + GGTINYGPWADR+R  LQ  FFP  YR + P++ L PG L
Sbjct  349   SPDIGNGDLPPEWGIDLVIKGGTINYGPWADRQRAELQKFFFPPDYRDAVPTKKLKPGQL  408

Query  521   RRNTVFKMRLEMSQETMLRIPTREPSKDWLWKGRADAIRGATKLKKQQKRRPSRPAEGDK  580
             R  T FK+ +E+  +  LRIP REPSKDW W  R    R                     
Sbjct  409   RIYTAFKLFIELRDDATLRIPFREPSKDWQWLKRYKETR---------------------  447

Query  581   SNLGPDIRPFGWLSLRVAGDSTVTYSMDMVASTTKGFNNLLELDLRDSRLSSSVNHALLW  640
                    RPFGWL L+V   ST++Y++ MVA T  G++N LE+ L    +++SVNH LL 
Sbjct  448   ----DRKRPFGWLHLKVGKGSTISYTIPMVA-TEDGYSNTLEVQLLHVEITTSVNHRLLL  502

Query  641   QCPRQLVTCDLSNPLSWNNLRTWTFDVESHNMELFLLRDHIFLLTDLVSDWASGPPQEYF  700
             +     + CDLS PL WN L+TWTFD+ S   ELFLLRDH  L TDL++DW+SGPP +Y+
Sbjct  503   KAETLRIDCDLSYPLKWNALQTWTFDITSTKAELFLLRDHKNLFTDLINDWSSGPPSDYY  562

Query  701   TFVPFTYTLNLSFVDFKLFVNVNDLNIISNPSDLDDNRMLVIKGKKLASDVLIPLTTYKP  760
              FVPFTY  NL   +F+L++NVND NII NP D D+N  L + G+ L  D  IP   ++P
Sbjct  563   LFVPFTYKFNLDLKNFELYLNVNDHNIIDNPLDFDENAFLSLCGESLDLDFTIPFDDFRP  622

Query  761   EQSAVNFNVYLDSGGIDFLSPQWDTLHTFLQD-QSIATLDGLSLRGSYNYYLSTAPDLTD  819
             E + + F++   +  +    P+W+TL TFL+    +      +L GSY Y+    PD  D
Sbjct  623   ESTTIPFDIEAPNFDLRLSLPEWNTLRTFLKGWVEVGRSPNFTLSGSYTYHPEVDPDNVD  682

Query  820   TLLLSINGVSPKLYLYGFLIKSFMTIRENYFGDEMHFKTLEEFQEL-------AYSEERV  872
             TL L + G    L LYGFLI+  M ++ENYFG+  HFKTLEE+QE               
Sbjct  683   TLSLDLEGGDSVLKLYGFLIRYLMNLKENYFGEFQHFKTLEEYQEKRRKSGLPPGDPVEK  742

Query  873   NFHNGINPNRKSNDLDVIVHVTVDDACALLPENMYDRLKCVRLTTPSLEVDLRFTNYYMD  932
              F       RKSN LDVI+  +V D   +LP N+Y    CV L    LEVDLRFTNYYMD
Sbjct  743   KFD-----PRKSNPLDVILSFSVHDGLLVLPANLYSCDPCVFLEFLELEVDLRFTNYYMD  797

Query  933   LQFSISPLRAAM----QVHRVEGPASISN--TQLFIDGAFIHGHRLFGLPPSEPTYVCNW  986
             LQ ++SP+  ++       R    + +++    LFIDG  + GHR+FG PP EPTY C W
Sbjct  798   LQLNLSPISLSLEDSCDEDRPSSSSHLTDGKPHLFIDGLQVRGHRMFGPPPEEPTYACLW  857

Query  987   DFEVGQIFGECSAEFLGCLAAALQSFDQSFDNEENALPPLVPIALHDVTFLRAKIQPIHI  1046
             D +VG I GE +  FL  LA+AL++F   FD+ ENALP        D TFLR  +  + +
Sbjct  858   DIDVGDITGELTPPFLKSLASALEAFGFGFDDSENALPEYETPEDLDYTFLRLSVDSVDL  917

Query  1047  AVLSDQAALILSSGLITTKFNDWANASFSKRMSLLVPDLSIAAVNYRDIDLKGSSS  1102
              ++   +AL LS   I   FND AN  +SKR+SLL+PD+++  ++        S  
Sbjct  918   KLVEGGSALNLSLDPIRLSFNDLANERYSKRLSLLIPDITLKQLDSSSASRSSSPW  973



Lambda      K        H        a         alpha
   0.318    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3884570392


Query= TCONS_00012605

Length=2875
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466562 pfam20413, Kiaa1109_N, Kiaa1109 N-terminal region. Thi...  895     0.0  


>CDD:466562 pfam20413, Kiaa1109_N, Kiaa1109 N-terminal region.  This entry 
represents a long uncharacterized region found at the N-terminus 
of a group of very long eukaryotic proteins. It is found 
in the human protein Kiaa1109.
Length=976

 Score = 895 bits (2316),  Expect = 0.0, Method: Composition-based stats.
 Identities = 336/803 (42%), Positives = 455/803 (57%), Gaps = 77/803 (10%)

Query  1    MRPNPDYKQSQLAAADGLSSKNEDKTGRQRRRDTIFNYQFQKRRAWHSIRDLIPYFQTSV  60
            ++PNPDYK+ QL A + +                      ++R+ WH +R L P +++S+
Sbjct  232  LKPNPDYKEPQLEAGERI----------------------RERKLWHKLRKLSPLWRSSL  269

Query  61   ESFHNHNKSINTPRNQTGLRNDA--HWIGLSRYLDDSTQDDHEEWHSVEYGRFSTLVDSP  118
             S  +       PR     R DA   W GLSRY DD  QDDH+EW SVEY + ST++DSP
Sbjct  270  LSLRDEP-----PRTMGEKRKDAPPAWKGLSRY-DDEDQDDHDEWSSVEYAKGSTILDSP  323

Query  119  SMAISYYWDIPGCVVSHRDPVKMSTSAASSDINGAPPPEWGIDIKLDGGTINYGPWADRE  178
             + ++YY+D+PG +V   +P  +  S +    NG  PPEWGID+ + GGTINYGPWADR+
Sbjct  324  DVDLTYYYDVPG-LVPE-EPESVEGSESPDIGNGDLPPEWGIDLVIKGGTINYGPWADRQ  381

Query  179  RVGLQNVFFPNTYRSSQPSEPLAPGDLRRNTVFKMRLEMSQETMLRIPTREPSKDWLWKG  238
            R  LQ  FFP  YR + P++ L PG LR  T FK+ +E+  +  LRIP REPSKDW W  
Sbjct  382  RAELQKFFFPPDYRDAVPTKKLKPGQLRIYTAFKLFIELRDDATLRIPFREPSKDWQWLK  441

Query  239  RADAIRGATKLKKQQKRRPSRPAEGDKSNLGPDIRPFGWLSLRVAGDSTVTYSMDMVAST  298
            R    R                            RPFGWL L+V   ST++Y++ MVA T
Sbjct  442  RYKETR-------------------------DRKRPFGWLHLKVGKGSTISYTIPMVA-T  475

Query  299  TKGFNNLLELDLRDSRLSSSVNHALLWQCPRQLVTCDLSNPLSWNNLRTWTFDVESHNME  358
              G++N LE+ L    +++SVNH LL +     + CDLS PL WN L+TWTFD+ S   E
Sbjct  476  EDGYSNTLEVQLLHVEITTSVNHRLLLKAETLRIDCDLSYPLKWNALQTWTFDITSTKAE  535

Query  359  LFLLRDHIFLLTDLVSDWASGPPQEYFTFVPFTYTLNLSFVDFKLFVNVNDLNIISNPSD  418
            LFLLRDH  L TDL++DW+SGPP +Y+ FVPFTY  NL   +F+L++NVND NII NP D
Sbjct  536  LFLLRDHKNLFTDLINDWSSGPPSDYYLFVPFTYKFNLDLKNFELYLNVNDHNIIDNPLD  595

Query  419  LDDNRMLVIKGKKLASDVLIPLTTYKPEQSAVNFNVYLDSGGIDFLSPQWDTLHTFLQD-  477
             D+N  L + G+ L  D  IP   ++PE + + F++   +  +    P+W+TL TFL+  
Sbjct  596  FDENAFLSLCGESLDLDFTIPFDDFRPESTTIPFDIEAPNFDLRLSLPEWNTLRTFLKGW  655

Query  478  QSIATLDGLSLRGSYNYYLSTAPDLTDTLLLSINGVSPKLYLYGFLIKSFMTIRENYFGD  537
              +      +L GSY Y+    PD  DTL L + G    L LYGFLI+  M ++ENYFG+
Sbjct  656  VEVGRSPNFTLSGSYTYHPEVDPDNVDTLSLDLEGGDSVLKLYGFLIRYLMNLKENYFGE  715

Query  538  EMHFKTLEEFQEL-------AYSEERVNFHNGINPNRKSNDLDVIVHVTVDDACALLPEN  590
              HFKTLEE+QE                F       RKSN LDVI+  +V D   +LP N
Sbjct  716  FQHFKTLEEYQEKRRKSGLPPGDPVEKKFD-----PRKSNPLDVILSFSVHDGLLVLPAN  770

Query  591  MYDRLKCVRLTTPSLEVDLRFTNYYMDLQFSISPLRAAM----QVHRVEGPASISN--TQ  644
            +Y    CV L    LEVDLRFTNYYMDLQ ++SP+  ++       R    + +++    
Sbjct  771  LYSCDPCVFLEFLELEVDLRFTNYYMDLQLNLSPISLSLEDSCDEDRPSSSSHLTDGKPH  830

Query  645  LFIDGAFIHGHRLFGLPPSEPTYVCNWDFEVGQIFGECSAEFLGCLAAALQSFDQSFDNE  704
            LFIDG  + GHR+FG PP EPTY C WD +VG I GE +  FL  LA+AL++F   FD+ 
Sbjct  831  LFIDGLQVRGHRMFGPPPEEPTYACLWDIDVGDITGELTPPFLKSLASALEAFGFGFDDS  890

Query  705  ENALPPLVPIALHDVTFLRAKIQPIHIAVLSDQAALILSSGLITTKFNDWANASFSKRMS  764
            ENALP        D TFLR  +  + + ++   +AL LS   I   FND AN  +SKR+S
Sbjct  891  ENALPEYETPEDLDYTFLRLSVDSVDLKLVEGGSALNLSLDPIRLSFNDLANERYSKRLS  950

Query  765  LLVPDLSIAAVNYRDIDLKGSSS  787
            LL+PD+++  ++        S  
Sbjct  951  LLIPDITLKQLDSSSASRSSSPW  973



Lambda      K        H        a         alpha
   0.317    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3543752520


Query= TCONS_00012606

Length=839
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  202     6e-61
CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV. Thi...  135     5e-38
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  99.2    2e-25
CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II. Thi...  58.6    2e-11


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 202 bits (516),  Expect = 6e-61, Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 100/212 (47%), Gaps = 45/212 (21%)

Query  18   NIRNMSVIAHVDHGKSTLTDSMIQRAGIISAA---KAGEGRYMDTRPDEQDRGITIKSTA  74
              RN+ +I HVDHGK+TLTD ++   G IS     K      +D  P+E++RGITIKS A
Sbjct  2    RHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSAA  61

Query  75   ISLYAKFPDPEDLKEIPQKVDGAEFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDCVE  134
            +S                     ++L+NLID+PGHVDF  EV   L   DGA++VVD VE
Sbjct  62   VSFE-----------------TKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVE  104

Query  135  GVCVQTETVLRQALTERIKPVLIINKVDRAL-LELQVSKEDLYQSFSRTVESVNVIIATY  193
            GV  QT   LR A    +  ++ INK+DR    EL+   E++ +                
Sbjct  105  GVMPQTREHLRLARQLGVPIIVFINKMDRVDGAELEEVVEEVSREL--------------  150

Query  194  HDKALGDVQVYPDRG---TVAFGSGLHGWAFT  222
                   ++ Y + G    V  GS L G    
Sbjct  151  -------LEKYGEDGEFVPVVPGSALKGEGVQ  175


>CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV.  This domain 
is found in elongation factor G, elongation factor 2 and 
some tetracycline resistance proteins and adopts a ribosomal 
protein S5 domain 2-like fold.
Length=121

 Score = 135 bits (343),  Expect = 5e-38, Method: Composition-based stats.
 Identities = 38/123 (31%), Positives = 51/123 (41%), Gaps = 7/123 (6%)

Query  600  GKINPR----DDFKARARLLADDYGWDVTDARKIWCFGPDTTGA-NLLVDQTKAVQYLNE  654
             ++  R       K RA       G D   AR I    P   G+ N  VD+T   Q   E
Sbjct  1    PQVAYRETIRKPVKERAYKHKKQSGGDGQYARVILRIEPLPPGSGNEFVDETVGGQIPKE  60

Query  655  IKDSFVSGFQWATREGPIAEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATL  714
               +   GFQ A +EGP+A EP+  ++  +LD + H   +       IP ARR    A L
Sbjct  61   FIPAVEKGFQEAMKEGPLAGEPVTDVKVTLLDGSYH--EVDSSEAAFIPAARRAFREALL  118

Query  715  LAE  717
             A 
Sbjct  119  KAS  121


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 99.2 bits (248),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 29/83 (35%), Positives = 42/83 (51%), Gaps = 1/83 (1%)

Query  720  LLEPIFNVEIQVPEQAMGGIYGVLTRRRGHVYSEEQRPGTPLFNVKAYLPVNESFGFNGD  779
            LLEPI  V I VPE+ +G +   L  RRG +   +   G     ++A +P+ E FGF  +
Sbjct  2    LLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGG-RVVIEAEVPLAELFGFATE  60

Query  780  LRQATGGQAFPQSVFDHWSILPG  802
            LR  T G+      F  +  +PG
Sbjct  61   LRSLTKGRGSFSMEFSGYQPVPG  83


>CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II.  This domain 
is found in Elongation Factor G. It shares a similar structure 
with domain V (pfam00679).
Length=75

 Score = 58.6 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 33/55 (60%), Gaps = 1/55 (2%)

Query  483  PVVQRGVEVKNAQDLPKLVEGLKRLSKSDPCVLTMIN-ESGQHIVAGAGELHLEI  536
            PV+   +E K   D  KL + L RL + DP +    + E+G+ I++G GELHLEI
Sbjct  4    PVISVAIEPKTKGDEDKLSKALNRLLEEDPTLRVERDEETGETILSGMGELHLEI  58



Lambda      K        H        a         alpha
   0.319    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0809    0.140     1.90     42.6     43.6 

Effective search space used: 1068022416


Query= TCONS_00018402

Length=569
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV. Thi...  135     1e-38
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  99.2    9e-26
CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II. Thi...  58.6    1e-11


>CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV.  This domain 
is found in elongation factor G, elongation factor 2 and 
some tetracycline resistance proteins and adopts a ribosomal 
protein S5 domain 2-like fold.
Length=121

 Score = 135 bits (343),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 38/123 (31%), Positives = 51/123 (41%), Gaps = 7/123 (6%)

Query  330  GKINPR----DDFKARARLLADDYGWDVTDARKIWCFGPDTTGA-NLLVDQTKAVQYLNE  384
             ++  R       K RA       G D   AR I    P   G+ N  VD+T   Q   E
Sbjct  1    PQVAYRETIRKPVKERAYKHKKQSGGDGQYARVILRIEPLPPGSGNEFVDETVGGQIPKE  60

Query  385  IKDSFVSGFQWATREGPIAEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATL  444
               +   GFQ A +EGP+A EP+  ++  +LD + H   +       IP ARR    A L
Sbjct  61   FIPAVEKGFQEAMKEGPLAGEPVTDVKVTLLDGSYH--EVDSSEAAFIPAARRAFREALL  118

Query  445  LAE  447
             A 
Sbjct  119  KAS  121


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 99.2 bits (248),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 29/83 (35%), Positives = 42/83 (51%), Gaps = 1/83 (1%)

Query  450  LLEPIFNVEIQVPEQAMGGIYGVLTRRRGHVYSEEQRPGTPLFNVKAYLPVNESFGFNGD  509
            LLEPI  V I VPE+ +G +   L  RRG +   +   G     ++A +P+ E FGF  +
Sbjct  2    LLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGG-RVVIEAEVPLAELFGFATE  60

Query  510  LRQATGGQAFPQSVFDHWSILPG  532
            LR  T G+      F  +  +PG
Sbjct  61   LRSLTKGRGSFSMEFSGYQPVPG  83


>CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II.  This domain 
is found in Elongation Factor G. It shares a similar structure 
with domain V (pfam00679).
Length=75

 Score = 58.6 bits (143),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 33/55 (60%), Gaps = 1/55 (2%)

Query  213  PVVQRGVEVKNAQDLPKLVEGLKRLSKSDPCVLTMIN-ESGQHIVAGAGELHLEI  266
            PV+   +E K   D  KL + L RL + DP +    + E+G+ I++G GELHLEI
Sbjct  4    PVISVAIEPKTKGDEDKLSKALNRLLEEDPTLRVERDEETGETILSGMGELHLEI  58



Lambda      K        H        a         alpha
   0.319    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 712842156


Query= TCONS_00012607

Length=886
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  203     5e-61
CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV. Thi...  136     3e-38
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  99.2    2e-25
CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II. Thi...  58.6    2e-11


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 203 bits (518),  Expect = 5e-61, Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 100/212 (47%), Gaps = 45/212 (21%)

Query  18   NIRNMSVIAHVDHGKSTLTDSMIQRAGIISAA---KAGEGRYMDTRPDEQDRGITIKSTA  74
              RN+ +I HVDHGK+TLTD ++   G IS     K      +D  P+E++RGITIKS A
Sbjct  2    RHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSAA  61

Query  75   ISLYAKFPDPEDLKEIPQKVDGAEFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDCVE  134
            +S                     ++L+NLID+PGHVDF  EV   L   DGA++VVD VE
Sbjct  62   VSFE-----------------TKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVE  104

Query  135  GVCVQTETVLRQALTERIKPVLIINKVDRAL-LELQVSKEDLYQSFSRTVESVNVIIATY  193
            GV  QT   LR A    +  ++ INK+DR    EL+   E++ +                
Sbjct  105  GVMPQTREHLRLARQLGVPIIVFINKMDRVDGAELEEVVEEVSREL--------------  150

Query  194  HDKALGDVQVYPDRG---TVAFGSGLHGWAFT  222
                   ++ Y + G    V  GS L G    
Sbjct  151  -------LEKYGEDGEFVPVVPGSALKGEGVQ  175


>CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV.  This domain 
is found in elongation factor G, elongation factor 2 and 
some tetracycline resistance proteins and adopts a ribosomal 
protein S5 domain 2-like fold.
Length=121

 Score = 136 bits (346),  Expect = 3e-38, Method: Composition-based stats.
 Identities = 38/123 (31%), Positives = 51/123 (41%), Gaps = 7/123 (6%)

Query  600  GKINPR----DDFKARARLLADDYGWDVTDARKIWCFGPDTTGA-NLLVDQTKAVQYLNE  654
             ++  R       K RA       G D   AR I    P   G+ N  VD+T   Q   E
Sbjct  1    PQVAYRETIRKPVKERAYKHKKQSGGDGQYARVILRIEPLPPGSGNEFVDETVGGQIPKE  60

Query  655  IKDSFVSGFQWATREGPIAEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATL  714
               +   GFQ A +EGP+A EP+  ++  +LD + H   +       IP ARR    A L
Sbjct  61   FIPAVEKGFQEAMKEGPLAGEPVTDVKVTLLDGSYH--EVDSSEAAFIPAARRAFREALL  118

Query  715  LAE  717
             A 
Sbjct  119  KAS  121


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 99.2 bits (248),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 29/83 (35%), Positives = 42/83 (51%), Gaps = 1/83 (1%)

Query  720  LLEPIFNVEIQVPEQAMGGIYGVLTRRRGHVYSEEQRPGTPLFNVKAYLPVNESFGFNGD  779
            LLEPI  V I VPE+ +G +   L  RRG +   +   G     ++A +P+ E FGF  +
Sbjct  2    LLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGG-RVVIEAEVPLAELFGFATE  60

Query  780  LRQATGGQAFPQSVFDHWSILPG  802
            LR  T G+      F  +  +PG
Sbjct  61   LRSLTKGRGSFSMEFSGYQPVPG  83


>CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II.  This domain 
is found in Elongation Factor G. It shares a similar structure 
with domain V (pfam00679).
Length=75

 Score = 58.6 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 33/55 (60%), Gaps = 1/55 (2%)

Query  483  PVVQRGVEVKNAQDLPKLVEGLKRLSKSDPCVLTMIN-ESGQHIVAGAGELHLEI  536
            PV+   +E K   D  KL + L RL + DP +    + E+G+ I++G GELHLEI
Sbjct  4    PVISVAIEPKTKGDEDKLSKALNRLLEEDPTLRVERDEETGETILSGMGELHLEI  58



Lambda      K        H        a         alpha
   0.319    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1135491574


Query= TCONS_00018404

Length=569
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV. Thi...  135     1e-38
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  99.2    9e-26
CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II. Thi...  58.6    1e-11


>CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV.  This domain 
is found in elongation factor G, elongation factor 2 and 
some tetracycline resistance proteins and adopts a ribosomal 
protein S5 domain 2-like fold.
Length=121

 Score = 135 bits (343),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 38/123 (31%), Positives = 51/123 (41%), Gaps = 7/123 (6%)

Query  330  GKINPR----DDFKARARLLADDYGWDVTDARKIWCFGPDTTGA-NLLVDQTKAVQYLNE  384
             ++  R       K RA       G D   AR I    P   G+ N  VD+T   Q   E
Sbjct  1    PQVAYRETIRKPVKERAYKHKKQSGGDGQYARVILRIEPLPPGSGNEFVDETVGGQIPKE  60

Query  385  IKDSFVSGFQWATREGPIAEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATL  444
               +   GFQ A +EGP+A EP+  ++  +LD + H   +       IP ARR    A L
Sbjct  61   FIPAVEKGFQEAMKEGPLAGEPVTDVKVTLLDGSYH--EVDSSEAAFIPAARRAFREALL  118

Query  445  LAE  447
             A 
Sbjct  119  KAS  121


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 99.2 bits (248),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 29/83 (35%), Positives = 42/83 (51%), Gaps = 1/83 (1%)

Query  450  LLEPIFNVEIQVPEQAMGGIYGVLTRRRGHVYSEEQRPGTPLFNVKAYLPVNESFGFNGD  509
            LLEPI  V I VPE+ +G +   L  RRG +   +   G     ++A +P+ E FGF  +
Sbjct  2    LLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGG-RVVIEAEVPLAELFGFATE  60

Query  510  LRQATGGQAFPQSVFDHWSILPG  532
            LR  T G+      F  +  +PG
Sbjct  61   LRSLTKGRGSFSMEFSGYQPVPG  83


>CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II.  This domain 
is found in Elongation Factor G. It shares a similar structure 
with domain V (pfam00679).
Length=75

 Score = 58.6 bits (143),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 33/55 (60%), Gaps = 1/55 (2%)

Query  213  PVVQRGVEVKNAQDLPKLVEGLKRLSKSDPCVLTMIN-ESGQHIVAGAGELHLEI  266
            PV+   +E K   D  KL + L RL + DP +    + E+G+ I++G GELHLEI
Sbjct  4    PVISVAIEPKTKGDEDKLSKALNRLLEEDPTLRVERDEETGETILSGMGELHLEI  58



Lambda      K        H        a         alpha
   0.319    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 712842156


Query= TCONS_00018403

Length=569
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV. Thi...  135     1e-38
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  99.2    9e-26
CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II. Thi...  58.6    1e-11


>CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV.  This domain 
is found in elongation factor G, elongation factor 2 and 
some tetracycline resistance proteins and adopts a ribosomal 
protein S5 domain 2-like fold.
Length=121

 Score = 135 bits (343),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 38/123 (31%), Positives = 51/123 (41%), Gaps = 7/123 (6%)

Query  330  GKINPR----DDFKARARLLADDYGWDVTDARKIWCFGPDTTGA-NLLVDQTKAVQYLNE  384
             ++  R       K RA       G D   AR I    P   G+ N  VD+T   Q   E
Sbjct  1    PQVAYRETIRKPVKERAYKHKKQSGGDGQYARVILRIEPLPPGSGNEFVDETVGGQIPKE  60

Query  385  IKDSFVSGFQWATREGPIAEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATL  444
               +   GFQ A +EGP+A EP+  ++  +LD + H   +       IP ARR    A L
Sbjct  61   FIPAVEKGFQEAMKEGPLAGEPVTDVKVTLLDGSYH--EVDSSEAAFIPAARRAFREALL  118

Query  445  LAE  447
             A 
Sbjct  119  KAS  121


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 99.2 bits (248),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 29/83 (35%), Positives = 42/83 (51%), Gaps = 1/83 (1%)

Query  450  LLEPIFNVEIQVPEQAMGGIYGVLTRRRGHVYSEEQRPGTPLFNVKAYLPVNESFGFNGD  509
            LLEPI  V I VPE+ +G +   L  RRG +   +   G     ++A +P+ E FGF  +
Sbjct  2    LLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGG-RVVIEAEVPLAELFGFATE  60

Query  510  LRQATGGQAFPQSVFDHWSILPG  532
            LR  T G+      F  +  +PG
Sbjct  61   LRSLTKGRGSFSMEFSGYQPVPG  83


>CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II.  This domain 
is found in Elongation Factor G. It shares a similar structure 
with domain V (pfam00679).
Length=75

 Score = 58.6 bits (143),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 33/55 (60%), Gaps = 1/55 (2%)

Query  213  PVVQRGVEVKNAQDLPKLVEGLKRLSKSDPCVLTMIN-ESGQHIVAGAGELHLEI  266
            PV+   +E K   D  KL + L RL + DP +    + E+G+ I++G GELHLEI
Sbjct  4    PVISVAIEPKTKGDEDKLSKALNRLLEEDPTLRVERDEETGETILSGMGELHLEI  58



Lambda      K        H        a         alpha
   0.319    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 712842156


Query= TCONS_00018405

Length=569
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV. Thi...  135     1e-38
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  99.2    9e-26
CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II. Thi...  58.6    1e-11


>CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV.  This domain 
is found in elongation factor G, elongation factor 2 and 
some tetracycline resistance proteins and adopts a ribosomal 
protein S5 domain 2-like fold.
Length=121

 Score = 135 bits (343),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 38/123 (31%), Positives = 51/123 (41%), Gaps = 7/123 (6%)

Query  330  GKINPR----DDFKARARLLADDYGWDVTDARKIWCFGPDTTGA-NLLVDQTKAVQYLNE  384
             ++  R       K RA       G D   AR I    P   G+ N  VD+T   Q   E
Sbjct  1    PQVAYRETIRKPVKERAYKHKKQSGGDGQYARVILRIEPLPPGSGNEFVDETVGGQIPKE  60

Query  385  IKDSFVSGFQWATREGPIAEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATL  444
               +   GFQ A +EGP+A EP+  ++  +LD + H   +       IP ARR    A L
Sbjct  61   FIPAVEKGFQEAMKEGPLAGEPVTDVKVTLLDGSYH--EVDSSEAAFIPAARRAFREALL  118

Query  445  LAE  447
             A 
Sbjct  119  KAS  121


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 99.2 bits (248),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 29/83 (35%), Positives = 42/83 (51%), Gaps = 1/83 (1%)

Query  450  LLEPIFNVEIQVPEQAMGGIYGVLTRRRGHVYSEEQRPGTPLFNVKAYLPVNESFGFNGD  509
            LLEPI  V I VPE+ +G +   L  RRG +   +   G     ++A +P+ E FGF  +
Sbjct  2    LLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGG-RVVIEAEVPLAELFGFATE  60

Query  510  LRQATGGQAFPQSVFDHWSILPG  532
            LR  T G+      F  +  +PG
Sbjct  61   LRSLTKGRGSFSMEFSGYQPVPG  83


>CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II.  This domain 
is found in Elongation Factor G. It shares a similar structure 
with domain V (pfam00679).
Length=75

 Score = 58.6 bits (143),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 33/55 (60%), Gaps = 1/55 (2%)

Query  213  PVVQRGVEVKNAQDLPKLVEGLKRLSKSDPCVLTMIN-ESGQHIVAGAGELHLEI  266
            PV+   +E K   D  KL + L RL + DP +    + E+G+ I++G GELHLEI
Sbjct  4    PVISVAIEPKTKGDEDKLSKALNRLLEEDPTLRVERDEETGETILSGMGELHLEI  58



Lambda      K        H        a         alpha
   0.319    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 712842156


Query= TCONS_00012610

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  156     2e-44
CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV. Thi...  135     6e-38
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  99.2    1e-25
CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II. Thi...  58.6    2e-11


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 156 bits (397),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 84/191 (44%), Gaps = 45/191 (24%)

Query  1    MIQRAGIISAA---KAGEGRYMDTRPDEQDRGITIKSTAISLYAKFPDPEDLKEIPQKVD  57
            ++   G IS     K      +D  P+E++RGITIKS A+S                   
Sbjct  23   LLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSAAVSFE-----------------  65

Query  58   GAEFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALTERIKPV  117
              ++L+NLID+PGHVDF  EV   L   DGA++VVD VEGV  QT   LR A    +  +
Sbjct  66   TKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVEGVMPQTREHLRLARQLGVPII  125

Query  118  LIINKVDRAL-LELQVSKEDLYQSFSRTVESVNVIIATYHDKALGDVQVYPDRG---TVA  173
            + INK+DR    EL+   E++ +                       ++ Y + G    V 
Sbjct  126  VFINKMDRVDGAELEEVVEEVSREL---------------------LEKYGEDGEFVPVV  164

Query  174  FGSGLHGWAFT  184
             GS L G    
Sbjct  165  PGSALKGEGVQ  175


>CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV.  This domain 
is found in elongation factor G, elongation factor 2 and 
some tetracycline resistance proteins and adopts a ribosomal 
protein S5 domain 2-like fold.
Length=121

 Score = 135 bits (343),  Expect = 6e-38, Method: Composition-based stats.
 Identities = 38/123 (31%), Positives = 51/123 (41%), Gaps = 7/123 (6%)

Query  562  GKINPR----DDFKARARLLADDYGWDVTDARKIWCFGPDTTGA-NLLVDQTKAVQYLNE  616
             ++  R       K RA       G D   AR I    P   G+ N  VD+T   Q   E
Sbjct  1    PQVAYRETIRKPVKERAYKHKKQSGGDGQYARVILRIEPLPPGSGNEFVDETVGGQIPKE  60

Query  617  IKDSFVSGFQWATREGPIAEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATL  676
               +   GFQ A +EGP+A EP+  ++  +LD + H   +       IP ARR    A L
Sbjct  61   FIPAVEKGFQEAMKEGPLAGEPVTDVKVTLLDGSYH--EVDSSEAAFIPAARRAFREALL  118

Query  677  LAE  679
             A 
Sbjct  119  KAS  121


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 99.2 bits (248),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 29/83 (35%), Positives = 42/83 (51%), Gaps = 1/83 (1%)

Query  682  LLEPIFNVEIQVPEQAMGGIYGVLTRRRGHVYSEEQRPGTPLFNVKAYLPVNESFGFNGD  741
            LLEPI  V I VPE+ +G +   L  RRG +   +   G     ++A +P+ E FGF  +
Sbjct  2    LLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGG-RVVIEAEVPLAELFGFATE  60

Query  742  LRQATGGQAFPQSVFDHWSILPG  764
            LR  T G+      F  +  +PG
Sbjct  61   LRSLTKGRGSFSMEFSGYQPVPG  83


>CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II.  This domain 
is found in Elongation Factor G. It shares a similar structure 
with domain V (pfam00679).
Length=75

 Score = 58.6 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 33/55 (60%), Gaps = 1/55 (2%)

Query  445  PVVQRGVEVKNAQDLPKLVEGLKRLSKSDPCVLTMIN-ESGQHIVAGAGELHLEI  498
            PV+   +E K   D  KL + L RL + DP +    + E+G+ I++G GELHLEI
Sbjct  4    PVISVAIEPKTKGDEDKLSKALNRLLEEDPTLRVERDEETGETILSGMGELHLEI  58



Lambda      K        H        a         alpha
   0.319    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1028792464


Query= TCONS_00012609

Length=772
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV. Thi...  135     4e-38
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  99.2    1e-25
CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  91.0    1e-21
CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II. Thi...  58.6    2e-11


>CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV.  This domain 
is found in elongation factor G, elongation factor 2 and 
some tetracycline resistance proteins and adopts a ribosomal 
protein S5 domain 2-like fold.
Length=121

 Score = 135 bits (343),  Expect = 4e-38, Method: Composition-based stats.
 Identities = 38/123 (31%), Positives = 51/123 (41%), Gaps = 7/123 (6%)

Query  533  GKINPR----DDFKARARLLADDYGWDVTDARKIWCFGPDTTGA-NLLVDQTKAVQYLNE  587
             ++  R       K RA       G D   AR I    P   G+ N  VD+T   Q   E
Sbjct  1    PQVAYRETIRKPVKERAYKHKKQSGGDGQYARVILRIEPLPPGSGNEFVDETVGGQIPKE  60

Query  588  IKDSFVSGFQWATREGPIAEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATL  647
               +   GFQ A +EGP+A EP+  ++  +LD + H   +       IP ARR    A L
Sbjct  61   FIPAVEKGFQEAMKEGPLAGEPVTDVKVTLLDGSYH--EVDSSEAAFIPAARRAFREALL  118

Query  648  LAE  650
             A 
Sbjct  119  KAS  121


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 99.2 bits (248),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 29/83 (35%), Positives = 42/83 (51%), Gaps = 1/83 (1%)

Query  653  LLEPIFNVEIQVPEQAMGGIYGVLTRRRGHVYSEEQRPGTPLFNVKAYLPVNESFGFNGD  712
            LLEPI  V I VPE+ +G +   L  RRG +   +   G     ++A +P+ E FGF  +
Sbjct  2    LLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGG-RVVIEAEVPLAELFGFATE  60

Query  713  LRQATGGQAFPQSVFDHWSILPG  735
            LR  T G+      F  +  +PG
Sbjct  61   LRSLTKGRGSFSMEFSGYQPVPG  83


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 91.0 bits (227),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 39/64 (61%), Gaps = 3/64 (5%)

Query  18  NIRNMSVIAHVDHGKSTLTDSMIQRAGIISAA---KAGEGRYMDTRPDEQDRGITIKSTA  74
             RN+ +I HVDHGK+TLTD ++   G IS     K      +D  P+E++RGITIKS A
Sbjct  2   RHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSAA  61

Query  75  ISLY  78
           +S  
Sbjct  62  VSFE  65


>CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II.  This domain 
is found in Elongation Factor G. It shares a similar structure 
with domain V (pfam00679).
Length=75

 Score = 58.6 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 33/55 (60%), Gaps = 1/55 (2%)

Query  416  PVVQRGVEVKNAQDLPKLVEGLKRLSKSDPCVLTMIN-ESGQHIVAGAGELHLEI  469
            PV+   +E K   D  KL + L RL + DP +    + E+G+ I++G GELHLEI
Sbjct  4    PVISVAIEPKTKGDEDKLSKALNRLLEEDPTLRVERDEETGETILSGMGELHLEI  58



Lambda      K        H        a         alpha
   0.318    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 986593056


Query= TCONS_00012611

Length=839
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  202     6e-61
CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV. Thi...  135     5e-38
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  99.2    2e-25
CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II. Thi...  58.6    2e-11


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 202 bits (516),  Expect = 6e-61, Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 100/212 (47%), Gaps = 45/212 (21%)

Query  18   NIRNMSVIAHVDHGKSTLTDSMIQRAGIISAA---KAGEGRYMDTRPDEQDRGITIKSTA  74
              RN+ +I HVDHGK+TLTD ++   G IS     K      +D  P+E++RGITIKS A
Sbjct  2    RHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSAA  61

Query  75   ISLYAKFPDPEDLKEIPQKVDGAEFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDCVE  134
            +S                     ++L+NLID+PGHVDF  EV   L   DGA++VVD VE
Sbjct  62   VSFE-----------------TKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVE  104

Query  135  GVCVQTETVLRQALTERIKPVLIINKVDRAL-LELQVSKEDLYQSFSRTVESVNVIIATY  193
            GV  QT   LR A    +  ++ INK+DR    EL+   E++ +                
Sbjct  105  GVMPQTREHLRLARQLGVPIIVFINKMDRVDGAELEEVVEEVSREL--------------  150

Query  194  HDKALGDVQVYPDRG---TVAFGSGLHGWAFT  222
                   ++ Y + G    V  GS L G    
Sbjct  151  -------LEKYGEDGEFVPVVPGSALKGEGVQ  175


>CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV.  This domain 
is found in elongation factor G, elongation factor 2 and 
some tetracycline resistance proteins and adopts a ribosomal 
protein S5 domain 2-like fold.
Length=121

 Score = 135 bits (343),  Expect = 5e-38, Method: Composition-based stats.
 Identities = 38/123 (31%), Positives = 51/123 (41%), Gaps = 7/123 (6%)

Query  600  GKINPR----DDFKARARLLADDYGWDVTDARKIWCFGPDTTGA-NLLVDQTKAVQYLNE  654
             ++  R       K RA       G D   AR I    P   G+ N  VD+T   Q   E
Sbjct  1    PQVAYRETIRKPVKERAYKHKKQSGGDGQYARVILRIEPLPPGSGNEFVDETVGGQIPKE  60

Query  655  IKDSFVSGFQWATREGPIAEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATL  714
               +   GFQ A +EGP+A EP+  ++  +LD + H   +       IP ARR    A L
Sbjct  61   FIPAVEKGFQEAMKEGPLAGEPVTDVKVTLLDGSYH--EVDSSEAAFIPAARRAFREALL  118

Query  715  LAE  717
             A 
Sbjct  119  KAS  121


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 99.2 bits (248),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 29/83 (35%), Positives = 42/83 (51%), Gaps = 1/83 (1%)

Query  720  LLEPIFNVEIQVPEQAMGGIYGVLTRRRGHVYSEEQRPGTPLFNVKAYLPVNESFGFNGD  779
            LLEPI  V I VPE+ +G +   L  RRG +   +   G     ++A +P+ E FGF  +
Sbjct  2    LLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGG-RVVIEAEVPLAELFGFATE  60

Query  780  LRQATGGQAFPQSVFDHWSILPG  802
            LR  T G+      F  +  +PG
Sbjct  61   LRSLTKGRGSFSMEFSGYQPVPG  83


>CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II.  This domain 
is found in Elongation Factor G. It shares a similar structure 
with domain V (pfam00679).
Length=75

 Score = 58.6 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 33/55 (60%), Gaps = 1/55 (2%)

Query  483  PVVQRGVEVKNAQDLPKLVEGLKRLSKSDPCVLTMIN-ESGQHIVAGAGELHLEI  536
            PV+   +E K   D  KL + L RL + DP +    + E+G+ I++G GELHLEI
Sbjct  4    PVISVAIEPKTKGDEDKLSKALNRLLEEDPTLRVERDEETGETILSGMGELHLEI  58



Lambda      K        H        a         alpha
   0.319    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1068022416


Query= TCONS_00018406

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  156     2e-44
CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV. Thi...  135     6e-38
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  99.2    1e-25
CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II. Thi...  58.6    2e-11


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 156 bits (397),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 84/191 (44%), Gaps = 45/191 (24%)

Query  1    MIQRAGIISAA---KAGEGRYMDTRPDEQDRGITIKSTAISLYAKFPDPEDLKEIPQKVD  57
            ++   G IS     K      +D  P+E++RGITIKS A+S                   
Sbjct  23   LLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSAAVSFE-----------------  65

Query  58   GAEFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALTERIKPV  117
              ++L+NLID+PGHVDF  EV   L   DGA++VVD VEGV  QT   LR A    +  +
Sbjct  66   TKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVEGVMPQTREHLRLARQLGVPII  125

Query  118  LIINKVDRAL-LELQVSKEDLYQSFSRTVESVNVIIATYHDKALGDVQVYPDRG---TVA  173
            + INK+DR    EL+   E++ +                       ++ Y + G    V 
Sbjct  126  VFINKMDRVDGAELEEVVEEVSREL---------------------LEKYGEDGEFVPVV  164

Query  174  FGSGLHGWAFT  184
             GS L G    
Sbjct  165  PGSALKGEGVQ  175


>CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV.  This domain 
is found in elongation factor G, elongation factor 2 and 
some tetracycline resistance proteins and adopts a ribosomal 
protein S5 domain 2-like fold.
Length=121

 Score = 135 bits (343),  Expect = 6e-38, Method: Composition-based stats.
 Identities = 38/123 (31%), Positives = 51/123 (41%), Gaps = 7/123 (6%)

Query  562  GKINPR----DDFKARARLLADDYGWDVTDARKIWCFGPDTTGA-NLLVDQTKAVQYLNE  616
             ++  R       K RA       G D   AR I    P   G+ N  VD+T   Q   E
Sbjct  1    PQVAYRETIRKPVKERAYKHKKQSGGDGQYARVILRIEPLPPGSGNEFVDETVGGQIPKE  60

Query  617  IKDSFVSGFQWATREGPIAEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATL  676
               +   GFQ A +EGP+A EP+  ++  +LD + H   +       IP ARR    A L
Sbjct  61   FIPAVEKGFQEAMKEGPLAGEPVTDVKVTLLDGSYH--EVDSSEAAFIPAARRAFREALL  118

Query  677  LAE  679
             A 
Sbjct  119  KAS  121


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 99.2 bits (248),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 29/83 (35%), Positives = 42/83 (51%), Gaps = 1/83 (1%)

Query  682  LLEPIFNVEIQVPEQAMGGIYGVLTRRRGHVYSEEQRPGTPLFNVKAYLPVNESFGFNGD  741
            LLEPI  V I VPE+ +G +   L  RRG +   +   G     ++A +P+ E FGF  +
Sbjct  2    LLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGG-RVVIEAEVPLAELFGFATE  60

Query  742  LRQATGGQAFPQSVFDHWSILPG  764
            LR  T G+      F  +  +PG
Sbjct  61   LRSLTKGRGSFSMEFSGYQPVPG  83


>CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II.  This domain 
is found in Elongation Factor G. It shares a similar structure 
with domain V (pfam00679).
Length=75

 Score = 58.6 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 33/55 (60%), Gaps = 1/55 (2%)

Query  445  PVVQRGVEVKNAQDLPKLVEGLKRLSKSDPCVLTMIN-ESGQHIVAGAGELHLEI  498
            PV+   +E K   D  KL + L RL + DP +    + E+G+ I++G GELHLEI
Sbjct  4    PVISVAIEPKTKGDEDKLSKALNRLLEEDPTLRVERDEETGETILSGMGELHLEI  58



Lambda      K        H        a         alpha
   0.319    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1028792464


Query= TCONS_00012612

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  201     4e-63


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 201 bits (514),  Expect = 4e-63, Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 100/212 (47%), Gaps = 45/212 (21%)

Query  18   NIRNMSVIAHVDHGKSTLTDSMIQRAGIISAA---KAGEGRYMDTRPDEQDRGITIKSTA  74
              RN+ +I HVDHGK+TLTD ++   G IS     K      +D  P+E++RGITIKS A
Sbjct  2    RHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSAA  61

Query  75   ISLYAKFPDPEDLKEIPQKVDGAEFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDCVE  134
            +S                     ++L+NLID+PGHVDF  EV   L   DGA++VVD VE
Sbjct  62   VSFE-----------------TKDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVE  104

Query  135  GVCVQTETVLRQALTERIKPVLIINKVDRAL-LELQVSKEDLYQSFSRTVESVNVIIATY  193
            GV  QT   LR A    +  ++ INK+DR    EL+   E++ +                
Sbjct  105  GVMPQTREHLRLARQLGVPIIVFINKMDRVDGAELEEVVEEVSREL--------------  150

Query  194  HDKALGDVQVYPDRG---TVAFGSGLHGWAFT  222
                   ++ Y + G    V  GS L G    
Sbjct  151  -------LEKYGEDGEFVPVVPGSALKGEGVQ  175



Lambda      K        H        a         alpha
   0.321    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 590476040


Query= TCONS_00012613

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV. Thi...  137     6e-39
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  99.5    9e-26
CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II. Thi...  58.6    1e-11


>CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV.  This domain 
is found in elongation factor G, elongation factor 2 and 
some tetracycline resistance proteins and adopts a ribosomal 
protein S5 domain 2-like fold.
Length=121

 Score = 137 bits (347),  Expect = 6e-39, Method: Composition-based stats.
 Identities = 38/123 (31%), Positives = 51/123 (41%), Gaps = 7/123 (6%)

Query  330  GKINPR----DDFKARARLLADDYGWDVTDARKIWCFGPDTTGA-NLLVDQTKAVQYLNE  384
             ++  R       K RA       G D   AR I    P   G+ N  VD+T   Q   E
Sbjct  1    PQVAYRETIRKPVKERAYKHKKQSGGDGQYARVILRIEPLPPGSGNEFVDETVGGQIPKE  60

Query  385  IKDSFVSGFQWATREGPIAEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATL  444
               +   GFQ A +EGP+A EP+  ++  +LD + H   +       IP ARR    A L
Sbjct  61   FIPAVEKGFQEAMKEGPLAGEPVTDVKVTLLDGSYH--EVDSSEAAFIPAARRAFREALL  118

Query  445  LAE  447
             A 
Sbjct  119  KAS  121


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 99.5 bits (249),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 29/83 (35%), Positives = 42/83 (51%), Gaps = 1/83 (1%)

Query  450  LLEPIFNVEIQVPEQAMGGIYGVLTRRRGHVYSEEQRPGTPLFNVKAYLPVNESFGFNGD  509
            LLEPI  V I VPE+ +G +   L  RRG +   +   G     ++A +P+ E FGF  +
Sbjct  2    LLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGG-RVVIEAEVPLAELFGFATE  60

Query  510  LRQATGGQAFPQSVFDHWSILPG  532
            LR  T G+      F  +  +PG
Sbjct  61   LRSLTKGRGSFSMEFSGYQPVPG  83


>CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II.  This domain 
is found in Elongation Factor G. It shares a similar structure 
with domain V (pfam00679).
Length=75

 Score = 58.6 bits (143),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 33/55 (60%), Gaps = 1/55 (2%)

Query  213  PVVQRGVEVKNAQDLPKLVEGLKRLSKSDPCVLTMIN-ESGQHIVAGAGELHLEI  266
            PV+   +E K   D  KL + L RL + DP +    + E+G+ I++G GELHLEI
Sbjct  4    PVISVAIEPKTKGDEDKLSKALNRLLEEDPTLRVERDEETGETILSGMGELHLEI  58



Lambda      K        H        a         alpha
   0.320    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 786069128


Query= TCONS_00012614

Length=569
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV. Thi...  135     1e-38
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  99.2    9e-26
CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II. Thi...  58.6    1e-11


>CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV.  This domain 
is found in elongation factor G, elongation factor 2 and 
some tetracycline resistance proteins and adopts a ribosomal 
protein S5 domain 2-like fold.
Length=121

 Score = 135 bits (343),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 38/123 (31%), Positives = 51/123 (41%), Gaps = 7/123 (6%)

Query  330  GKINPR----DDFKARARLLADDYGWDVTDARKIWCFGPDTTGA-NLLVDQTKAVQYLNE  384
             ++  R       K RA       G D   AR I    P   G+ N  VD+T   Q   E
Sbjct  1    PQVAYRETIRKPVKERAYKHKKQSGGDGQYARVILRIEPLPPGSGNEFVDETVGGQIPKE  60

Query  385  IKDSFVSGFQWATREGPIAEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATL  444
               +   GFQ A +EGP+A EP+  ++  +LD + H   +       IP ARR    A L
Sbjct  61   FIPAVEKGFQEAMKEGPLAGEPVTDVKVTLLDGSYH--EVDSSEAAFIPAARRAFREALL  118

Query  445  LAE  447
             A 
Sbjct  119  KAS  121


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 99.2 bits (248),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 29/83 (35%), Positives = 42/83 (51%), Gaps = 1/83 (1%)

Query  450  LLEPIFNVEIQVPEQAMGGIYGVLTRRRGHVYSEEQRPGTPLFNVKAYLPVNESFGFNGD  509
            LLEPI  V I VPE+ +G +   L  RRG +   +   G     ++A +P+ E FGF  +
Sbjct  2    LLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGG-RVVIEAEVPLAELFGFATE  60

Query  510  LRQATGGQAFPQSVFDHWSILPG  532
            LR  T G+      F  +  +PG
Sbjct  61   LRSLTKGRGSFSMEFSGYQPVPG  83


>CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II.  This domain 
is found in Elongation Factor G. It shares a similar structure 
with domain V (pfam00679).
Length=75

 Score = 58.6 bits (143),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 33/55 (60%), Gaps = 1/55 (2%)

Query  213  PVVQRGVEVKNAQDLPKLVEGLKRLSKSDPCVLTMIN-ESGQHIVAGAGELHLEI  266
            PV+   +E K   D  KL + L RL + DP +    + E+G+ I++G GELHLEI
Sbjct  4    PVISVAIEPKTKGDEDKLSKALNRLLEEDPTLRVERDEETGETILSGMGELHLEI  58



Lambda      K        H        a         alpha
   0.319    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 712842156


Query= TCONS_00012615

Length=569
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV. Thi...  135     1e-38
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  99.2    9e-26
CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II. Thi...  58.6    1e-11


>CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV.  This domain 
is found in elongation factor G, elongation factor 2 and 
some tetracycline resistance proteins and adopts a ribosomal 
protein S5 domain 2-like fold.
Length=121

 Score = 135 bits (343),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 38/123 (31%), Positives = 51/123 (41%), Gaps = 7/123 (6%)

Query  330  GKINPR----DDFKARARLLADDYGWDVTDARKIWCFGPDTTGA-NLLVDQTKAVQYLNE  384
             ++  R       K RA       G D   AR I    P   G+ N  VD+T   Q   E
Sbjct  1    PQVAYRETIRKPVKERAYKHKKQSGGDGQYARVILRIEPLPPGSGNEFVDETVGGQIPKE  60

Query  385  IKDSFVSGFQWATREGPIAEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATL  444
               +   GFQ A +EGP+A EP+  ++  +LD + H   +       IP ARR    A L
Sbjct  61   FIPAVEKGFQEAMKEGPLAGEPVTDVKVTLLDGSYH--EVDSSEAAFIPAARRAFREALL  118

Query  445  LAE  447
             A 
Sbjct  119  KAS  121


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 99.2 bits (248),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 29/83 (35%), Positives = 42/83 (51%), Gaps = 1/83 (1%)

Query  450  LLEPIFNVEIQVPEQAMGGIYGVLTRRRGHVYSEEQRPGTPLFNVKAYLPVNESFGFNGD  509
            LLEPI  V I VPE+ +G +   L  RRG +   +   G     ++A +P+ E FGF  +
Sbjct  2    LLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGG-RVVIEAEVPLAELFGFATE  60

Query  510  LRQATGGQAFPQSVFDHWSILPG  532
            LR  T G+      F  +  +PG
Sbjct  61   LRSLTKGRGSFSMEFSGYQPVPG  83


>CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II.  This domain 
is found in Elongation Factor G. It shares a similar structure 
with domain V (pfam00679).
Length=75

 Score = 58.6 bits (143),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 33/55 (60%), Gaps = 1/55 (2%)

Query  213  PVVQRGVEVKNAQDLPKLVEGLKRLSKSDPCVLTMIN-ESGQHIVAGAGELHLEI  266
            PV+   +E K   D  KL + L RL + DP +    + E+G+ I++G GELHLEI
Sbjct  4    PVISVAIEPKTKGDEDKLSKALNRLLEEDPTLRVERDEETGETILSGMGELHLEI  58



Lambda      K        H        a         alpha
   0.319    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 712842156


Query= TCONS_00018407

Length=104
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  73.0    4e-19


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 73.0 bits (180),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query  1   MGGIYGVLTRRRGHVYSEEQRPGTPLFNVKAYLPVNESFGFNGDLRQATGGQAFPQSVFD  60
           +G +   L  RRG +   +   G     ++A +P+ E FGF  +LR  T G+      F 
Sbjct  18  VGDVISDLNSRRGEILDMDPDDGG-RVVIEAEVPLAELFGFATELRSLTKGRGSFSMEFS  76

Query  61  HWSILPG  67
            +  +PG
Sbjct  77  GYQPVPG  83



Lambda      K        H        a         alpha
   0.317    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00012617

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461497 pfam04950, RIBIOP_C, 40S ribosome biogenesis protein T...  112     1e-30


>CDD:461497 pfam04950, RIBIOP_C, 40S ribosome biogenesis protein Tsr1 and 
BMS1 C-terminal.  RIBIOP_C is a family of eukaryotic proteins 
from the C-terminus of pre-rRNA-processing protein or ribosome 
biogenesis proteins BMS1 and TSR1. These proteins act, 
in the nucleolus, as a molecular switch during maturation of 
the 40S ribosomal subunit. This domain, domain IV of translation 
elongation factor selb, adopts the same fold as translation 
proteins such as domain II of GTP-elongation factor Tu 
proteins.
Length=284

 Score = 112 bits (284),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 25/61 (41%), Positives = 36/61 (59%), Gaps = 1/61 (2%)

Query  1    MFNSSLEIAKFEGASIRTVSGIRGQIKRALAKPEGCFRATFEDKILMSDIVFLRAWYPIK  60
            MF +  ++A F+   +RT SG RG IK +L    G F+ATF+ KIL  D VF+  +  + 
Sbjct  225  MFFNPEDVAWFKPVELRTKSGRRGHIKESLGT-HGYFKATFDGKILQQDTVFMSLYKRVF  283

Query  61   P  61
            P
Sbjct  284  P  284



Lambda      K        H        a         alpha
   0.316    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00012616

Length=507


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.122    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00018408

Length=665
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460224 pfam01480, PWI, PWI domain                                 67.5    8e-15


>CDD:460224 pfam01480, PWI, PWI domain.  
Length=71

 Score = 67.5 bits (166),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (52%), Gaps = 3/62 (5%)

Query  10  EVKKWVVKKLEDISDADSDVLADYVLALIRSDAPDDEIRKASVENLEDFLREHTTRFVDE  69
            +K W+ KK+ +I   + DV+ +YV+ L+    PD    K     L  FL +   +FV E
Sbjct  2   VLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDP---KELQIQLTGFLDKDAAKFVKE  58

Query  70  LF  71
           L+
Sbjct  59  LW  60



Lambda      K        H        a         alpha
   0.315    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0799    0.140     1.90     42.6     43.6 

Effective search space used: 843579880


Query= TCONS_00012618

Length=507


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.122    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00012619

Length=646
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460224 pfam01480, PWI, PWI domain                                 67.5    8e-15


>CDD:460224 pfam01480, PWI, PWI domain.  
Length=71

 Score = 67.5 bits (166),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (52%), Gaps = 3/62 (5%)

Query  10  EVKKWVVKKLEDISDADSDVLADYVLALIRSDAPDDEIRKASVENLEDFLREHTTRFVDE  69
            +K W+ KK+ +I   + DV+ +YV+ L+    PD    K     L  FL +   +FV E
Sbjct  2   VLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDP---KELQIQLTGFLDKDAAKFVKE  58

Query  70  LF  71
           L+
Sbjct  59  LW  60



Lambda      K        H        a         alpha
   0.315    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 815558870


Query= TCONS_00012620

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430546 pfam09347, DUF1989, Domain of unknown function (DUF198...  223     5e-74


>CDD:430546 pfam09347, DUF1989, Domain of unknown function (DUF1989).  This 
family of proteins are functionally uncharacterized.
Length=165

 Score = 223 bits (570),  Expect = 5e-74, Method: Composition-based stats.
 Identities = 66/195 (34%), Positives = 96/195 (49%), Gaps = 33/195 (17%)

Query  47   IRPCSGQAWVVPAGHICRLTTPKGPQVGDLNIWNANNPRERLWAARTRQI-HASHVSVGD  105
            +   SG ++VV AG   R+T  +G QV DL  +NA++P ER  AA TR++   ++++ GD
Sbjct  1    VPAGSGWSFVVKAGQTLRITDLEGNQVVDLLAYNADDPSERYSAADTRKLQGTAYLTTGD  60

Query  106  RLWSNLPYLRPLVTITGDSLNGGQLHEVLEVNGQRKEGVGFGTSKWGGRVHDLLGTRCDP  165
             L+SN+   RPL+TI  D++                              HD LG  CD 
Sbjct  61   VLYSNM--GRPLLTIVEDTV----------------------------GRHDTLGGACDA  90

Query  166  YVNLLMGGE--TFDFHCHSNLTRAVMPYGLTELDVHDVLNVFQVTGLDEQGKYFMETSPA  223
              N L  G    +  +C  N  RA+  YGL + D+   LN F    +D  G+ F    P+
Sbjct  91   ESNTLRYGHGNDYHRNCRDNFLRALAKYGLGKRDLPPNLNFFMNVPVDADGRLFFVPPPS  150

Query  224  KPGEYFEFFAEVDVL  238
            KPG+Y E  AE+D+L
Sbjct  151  KPGDYVELRAEMDLL  165



Lambda      K        H        a         alpha
   0.317    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00012622

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430546 pfam09347, DUF1989, Domain of unknown function (DUF198...  223     5e-74


>CDD:430546 pfam09347, DUF1989, Domain of unknown function (DUF1989).  This 
family of proteins are functionally uncharacterized.
Length=165

 Score = 223 bits (570),  Expect = 5e-74, Method: Composition-based stats.
 Identities = 66/195 (34%), Positives = 96/195 (49%), Gaps = 33/195 (17%)

Query  47   IRPCSGQAWVVPAGHICRLTTPKGPQVGDLNIWNANNPRERLWAARTRQI-HASHVSVGD  105
            +   SG ++VV AG   R+T  +G QV DL  +NA++P ER  AA TR++   ++++ GD
Sbjct  1    VPAGSGWSFVVKAGQTLRITDLEGNQVVDLLAYNADDPSERYSAADTRKLQGTAYLTTGD  60

Query  106  RLWSNLPYLRPLVTITGDSLNGGQLHEVLEVNGQRKEGVGFGTSKWGGRVHDLLGTRCDP  165
             L+SN+   RPL+TI  D++                              HD LG  CD 
Sbjct  61   VLYSNM--GRPLLTIVEDTV----------------------------GRHDTLGGACDA  90

Query  166  YVNLLMGGE--TFDFHCHSNLTRAVMPYGLTELDVHDVLNVFQVTGLDEQGKYFMETSPA  223
              N L  G    +  +C  N  RA+  YGL + D+   LN F    +D  G+ F    P+
Sbjct  91   ESNTLRYGHGNDYHRNCRDNFLRALAKYGLGKRDLPPNLNFFMNVPVDADGRLFFVPPPS  150

Query  224  KPGEYFEFFAEVDVL  238
            KPG+Y E  AE+D+L
Sbjct  151  KPGDYVELRAEMDLL  165



Lambda      K        H        a         alpha
   0.317    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00012621

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430546 pfam09347, DUF1989, Domain of unknown function (DUF198...  221     3e-74


>CDD:430546 pfam09347, DUF1989, Domain of unknown function (DUF1989).  This 
family of proteins are functionally uncharacterized.
Length=165

 Score = 221 bits (566),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 66/195 (34%), Positives = 96/195 (49%), Gaps = 33/195 (17%)

Query  47   IRPCSGQAWVVPAGHICRLTTPKGPQVGDLNIWNANNPRERLWAARTRQI-HASHVSVGD  105
            +   SG ++VV AG   R+T  +G QV DL  +NA++P ER  AA TR++   ++++ GD
Sbjct  1    VPAGSGWSFVVKAGQTLRITDLEGNQVVDLLAYNADDPSERYSAADTRKLQGTAYLTTGD  60

Query  106  RLWSNLPYLRPLVTITGDSLNGGQLHEVLEVNGQRKEGVGFGTSKWGGRVHDLLGTRCDP  165
             L+SN+   RPL+TI  D++                              HD LG  CD 
Sbjct  61   VLYSNM--GRPLLTIVEDTV----------------------------GRHDTLGGACDA  90

Query  166  YVNLLMGGE--TFDFHCHSNLTRAVMPYGLTELDVHDVLNVFQVTGLDEQGKYFMETSPA  223
              N L  G    +  +C  N  RA+  YGL + D+   LN F    +D  G+ F    P+
Sbjct  91   ESNTLRYGHGNDYHRNCRDNFLRALAKYGLGKRDLPPNLNFFMNVPVDADGRLFFVPPPS  150

Query  224  KPGEYFEFFAEVDVL  238
            KPG+Y E  AE+D+L
Sbjct  151  KPGDYVELRAEMDLL  165



Lambda      K        H        a         alpha
   0.319    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00018409

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00012623

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461115 pfam03972, MmgE_PrpD, MmgE/PrpD family. This family in...  140     3e-40
CDD:466033 pfam19305, MmgE_PrpD_C, MmgE/PrpD C-terminal domain. T...  134     7e-39


>CDD:461115 pfam03972, MmgE_PrpD, MmgE/PrpD family.  This family includes 
2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required 
for propionate catabolism. It catalyzes the third step 
of the 2-methylcitric acid cycle.
Length=244

 Score = 140 bits (355),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 55/128 (43%), Positives = 64/128 (50%), Gaps = 3/128 (2%)

Query  2    RTLLTALIKAYEIQGCYQIRNAFNAFG-IDHVILVKLASAAVVAWLLGLTEEKTQATLSH  60
            R LLTAL+  YEIQG   + N+FN +G  DHV L    +AA  A LLGL  E+    L  
Sbjct  117  RDLLTALVVGYEIQGRLALANSFNHYGRHDHVTLGTFGAAAAAAKLLGLDAEQIANALGI  176

Query  61   VWMDGHSSRVYRTGANTIPRKGWAAGDACMRAVHLALLVRAGQPGAPTPLSSLPFGFYAR  120
                    R YR   NT  RK WAAGDA    V  ALL + G  G P+ L    +GFY  
Sbjct  177  AATQAAGLRQYRHAPNTSKRK-WAAGDAARNGVFAALLAKRGFTG-PSDLLEGEWGFYDV  234

Query  121  TFGASGFE  128
              G   FE
Sbjct  235  LSGGKDFE  242


>CDD:466033 pfam19305, MmgE_PrpD_C, MmgE/PrpD C-terminal domain.  This entry 
represents the C-terminal domain of 2-methylcitrate dehydratase 
EC:4.2.1.79 (PrpD) that is required for propionate catabolism. 
It catalyses the third step of the 2-methylcitric 
acid cycle. This domain is related to the serine dehydratase 
beta chain.
Length=173

 Score = 134 bits (339),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 62/171 (36%), Positives = 91/171 (53%), Gaps = 13/171 (8%)

Query  147  PVEGHGIAAVEAALVQLGKLRAR-GLGPGCIARVEVRTTQAADLIINKRGPLCNAADRDH  205
            P E H   A++AAL    +L    GL P  I  + +RT +AA  II K+GP    AD DH
Sbjct  2    PAERHTHTAIDAAL----QLHREHGLRPDDIESIVIRTHEAALRIIGKKGPPATRADADH  57

Query  206  CIQYVIALAFLKGSPPEVSDYRDESYWAESEELASLRERIFIHVDEHLTRDYLDLNKKSI  265
             +QYV+A+A L G    + D+ DE   A    + +LR+++ +  D   T DY +  K+SI
Sbjct  58   SLQYVVAVALLDGR-LTLEDFEDER--AADPRIDALRDKVEVVEDPEFTADYPE--KRSI  112

Query  266  GSVLTVHLQDGSELAEVLIEYPAGHVRNPATARAVQEKFTKNMRLMFTETE  316
               + + L DG    EV +EYP GH R P +   ++EKF +    +  E+E
Sbjct  113  ---VVIVLLDGGRTLEVRVEYPKGHPRRPLSREELEEKFRRLAAGVLPESE  160



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00012624

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461115 pfam03972, MmgE_PrpD, MmgE/PrpD family. This family in...  140     3e-40
CDD:466033 pfam19305, MmgE_PrpD_C, MmgE/PrpD C-terminal domain. T...  134     7e-39


>CDD:461115 pfam03972, MmgE_PrpD, MmgE/PrpD family.  This family includes 
2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required 
for propionate catabolism. It catalyzes the third step 
of the 2-methylcitric acid cycle.
Length=244

 Score = 140 bits (355),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 55/128 (43%), Positives = 64/128 (50%), Gaps = 3/128 (2%)

Query  2    RTLLTALIKAYEIQGCYQIRNAFNAFG-IDHVILVKLASAAVVAWLLGLTEEKTQATLSH  60
            R LLTAL+  YEIQG   + N+FN +G  DHV L    +AA  A LLGL  E+    L  
Sbjct  117  RDLLTALVVGYEIQGRLALANSFNHYGRHDHVTLGTFGAAAAAAKLLGLDAEQIANALGI  176

Query  61   VWMDGHSSRVYRTGANTIPRKGWAAGDACMRAVHLALLVRAGQPGAPTPLSSLPFGFYAR  120
                    R YR   NT  RK WAAGDA    V  ALL + G  G P+ L    +GFY  
Sbjct  177  AATQAAGLRQYRHAPNTSKRK-WAAGDAARNGVFAALLAKRGFTG-PSDLLEGEWGFYDV  234

Query  121  TFGASGFE  128
              G   FE
Sbjct  235  LSGGKDFE  242


>CDD:466033 pfam19305, MmgE_PrpD_C, MmgE/PrpD C-terminal domain.  This entry 
represents the C-terminal domain of 2-methylcitrate dehydratase 
EC:4.2.1.79 (PrpD) that is required for propionate catabolism. 
It catalyses the third step of the 2-methylcitric 
acid cycle. This domain is related to the serine dehydratase 
beta chain.
Length=173

 Score = 134 bits (339),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 62/171 (36%), Positives = 91/171 (53%), Gaps = 13/171 (8%)

Query  147  PVEGHGIAAVEAALVQLGKLRAR-GLGPGCIARVEVRTTQAADLIINKRGPLCNAADRDH  205
            P E H   A++AAL    +L    GL P  I  + +RT +AA  II K+GP    AD DH
Sbjct  2    PAERHTHTAIDAAL----QLHREHGLRPDDIESIVIRTHEAALRIIGKKGPPATRADADH  57

Query  206  CIQYVIALAFLKGSPPEVSDYRDESYWAESEELASLRERIFIHVDEHLTRDYLDLNKKSI  265
             +QYV+A+A L G    + D+ DE   A    + +LR+++ +  D   T DY +  K+SI
Sbjct  58   SLQYVVAVALLDGR-LTLEDFEDER--AADPRIDALRDKVEVVEDPEFTADYPE--KRSI  112

Query  266  GSVLTVHLQDGSELAEVLIEYPAGHVRNPATARAVQEKFTKNMRLMFTETE  316
               + + L DG    EV +EYP GH R P +   ++EKF +    +  E+E
Sbjct  113  ---VVIVLLDGGRTLEVRVEYPKGHPRRPLSREELEEKFRRLAAGVLPESE  160



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00018410

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461115 pfam03972, MmgE_PrpD, MmgE/PrpD family. This family in...  140     3e-40
CDD:466033 pfam19305, MmgE_PrpD_C, MmgE/PrpD C-terminal domain. T...  134     7e-39


>CDD:461115 pfam03972, MmgE_PrpD, MmgE/PrpD family.  This family includes 
2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required 
for propionate catabolism. It catalyzes the third step 
of the 2-methylcitric acid cycle.
Length=244

 Score = 140 bits (355),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 55/128 (43%), Positives = 64/128 (50%), Gaps = 3/128 (2%)

Query  2    RTLLTALIKAYEIQGCYQIRNAFNAFG-IDHVILVKLASAAVVAWLLGLTEEKTQATLSH  60
            R LLTAL+  YEIQG   + N+FN +G  DHV L    +AA  A LLGL  E+    L  
Sbjct  117  RDLLTALVVGYEIQGRLALANSFNHYGRHDHVTLGTFGAAAAAAKLLGLDAEQIANALGI  176

Query  61   VWMDGHSSRVYRTGANTIPRKGWAAGDACMRAVHLALLVRAGQPGAPTPLSSLPFGFYAR  120
                    R YR   NT  RK WAAGDA    V  ALL + G  G P+ L    +GFY  
Sbjct  177  AATQAAGLRQYRHAPNTSKRK-WAAGDAARNGVFAALLAKRGFTG-PSDLLEGEWGFYDV  234

Query  121  TFGASGFE  128
              G   FE
Sbjct  235  LSGGKDFE  242


>CDD:466033 pfam19305, MmgE_PrpD_C, MmgE/PrpD C-terminal domain.  This entry 
represents the C-terminal domain of 2-methylcitrate dehydratase 
EC:4.2.1.79 (PrpD) that is required for propionate catabolism. 
It catalyses the third step of the 2-methylcitric 
acid cycle. This domain is related to the serine dehydratase 
beta chain.
Length=173

 Score = 134 bits (339),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 62/171 (36%), Positives = 91/171 (53%), Gaps = 13/171 (8%)

Query  147  PVEGHGIAAVEAALVQLGKLRAR-GLGPGCIARVEVRTTQAADLIINKRGPLCNAADRDH  205
            P E H   A++AAL    +L    GL P  I  + +RT +AA  II K+GP    AD DH
Sbjct  2    PAERHTHTAIDAAL----QLHREHGLRPDDIESIVIRTHEAALRIIGKKGPPATRADADH  57

Query  206  CIQYVIALAFLKGSPPEVSDYRDESYWAESEELASLRERIFIHVDEHLTRDYLDLNKKSI  265
             +QYV+A+A L G    + D+ DE   A    + +LR+++ +  D   T DY +  K+SI
Sbjct  58   SLQYVVAVALLDGR-LTLEDFEDER--AADPRIDALRDKVEVVEDPEFTADYPE--KRSI  112

Query  266  GSVLTVHLQDGSELAEVLIEYPAGHVRNPATARAVQEKFTKNMRLMFTETE  316
               + + L DG    EV +EYP GH R P +   ++EKF +    +  E+E
Sbjct  113  ---VVIVLLDGGRTLEVRVEYPKGHPRRPLSREELEEKFRRLAAGVLPESE  160



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00012626

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461115 pfam03972, MmgE_PrpD, MmgE/PrpD family. This family in...  140     3e-40
CDD:466033 pfam19305, MmgE_PrpD_C, MmgE/PrpD C-terminal domain. T...  134     7e-39


>CDD:461115 pfam03972, MmgE_PrpD, MmgE/PrpD family.  This family includes 
2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required 
for propionate catabolism. It catalyzes the third step 
of the 2-methylcitric acid cycle.
Length=244

 Score = 140 bits (355),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 55/128 (43%), Positives = 64/128 (50%), Gaps = 3/128 (2%)

Query  2    RTLLTALIKAYEIQGCYQIRNAFNAFG-IDHVILVKLASAAVVAWLLGLTEEKTQATLSH  60
            R LLTAL+  YEIQG   + N+FN +G  DHV L    +AA  A LLGL  E+    L  
Sbjct  117  RDLLTALVVGYEIQGRLALANSFNHYGRHDHVTLGTFGAAAAAAKLLGLDAEQIANALGI  176

Query  61   VWMDGHSSRVYRTGANTIPRKGWAAGDACMRAVHLALLVRAGQPGAPTPLSSLPFGFYAR  120
                    R YR   NT  RK WAAGDA    V  ALL + G  G P+ L    +GFY  
Sbjct  177  AATQAAGLRQYRHAPNTSKRK-WAAGDAARNGVFAALLAKRGFTG-PSDLLEGEWGFYDV  234

Query  121  TFGASGFE  128
              G   FE
Sbjct  235  LSGGKDFE  242


>CDD:466033 pfam19305, MmgE_PrpD_C, MmgE/PrpD C-terminal domain.  This entry 
represents the C-terminal domain of 2-methylcitrate dehydratase 
EC:4.2.1.79 (PrpD) that is required for propionate catabolism. 
It catalyses the third step of the 2-methylcitric 
acid cycle. This domain is related to the serine dehydratase 
beta chain.
Length=173

 Score = 134 bits (339),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 62/171 (36%), Positives = 91/171 (53%), Gaps = 13/171 (8%)

Query  147  PVEGHGIAAVEAALVQLGKLRAR-GLGPGCIARVEVRTTQAADLIINKRGPLCNAADRDH  205
            P E H   A++AAL    +L    GL P  I  + +RT +AA  II K+GP    AD DH
Sbjct  2    PAERHTHTAIDAAL----QLHREHGLRPDDIESIVIRTHEAALRIIGKKGPPATRADADH  57

Query  206  CIQYVIALAFLKGSPPEVSDYRDESYWAESEELASLRERIFIHVDEHLTRDYLDLNKKSI  265
             +QYV+A+A L G    + D+ DE   A    + +LR+++ +  D   T DY +  K+SI
Sbjct  58   SLQYVVAVALLDGR-LTLEDFEDER--AADPRIDALRDKVEVVEDPEFTADYPE--KRSI  112

Query  266  GSVLTVHLQDGSELAEVLIEYPAGHVRNPATARAVQEKFTKNMRLMFTETE  316
               + + L DG    EV +EYP GH R P +   ++EKF +    +  E+E
Sbjct  113  ---VVIVLLDGGRTLEVRVEYPKGHPRRPLSREELEEKFRRLAAGVLPESE  160



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00018411

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461115 pfam03972, MmgE_PrpD, MmgE/PrpD family. This family in...  140     3e-40
CDD:466033 pfam19305, MmgE_PrpD_C, MmgE/PrpD C-terminal domain. T...  134     7e-39


>CDD:461115 pfam03972, MmgE_PrpD, MmgE/PrpD family.  This family includes 
2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required 
for propionate catabolism. It catalyzes the third step 
of the 2-methylcitric acid cycle.
Length=244

 Score = 140 bits (355),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 55/128 (43%), Positives = 64/128 (50%), Gaps = 3/128 (2%)

Query  2    RTLLTALIKAYEIQGCYQIRNAFNAFG-IDHVILVKLASAAVVAWLLGLTEEKTQATLSH  60
            R LLTAL+  YEIQG   + N+FN +G  DHV L    +AA  A LLGL  E+    L  
Sbjct  117  RDLLTALVVGYEIQGRLALANSFNHYGRHDHVTLGTFGAAAAAAKLLGLDAEQIANALGI  176

Query  61   VWMDGHSSRVYRTGANTIPRKGWAAGDACMRAVHLALLVRAGQPGAPTPLSSLPFGFYAR  120
                    R YR   NT  RK WAAGDA    V  ALL + G  G P+ L    +GFY  
Sbjct  177  AATQAAGLRQYRHAPNTSKRK-WAAGDAARNGVFAALLAKRGFTG-PSDLLEGEWGFYDV  234

Query  121  TFGASGFE  128
              G   FE
Sbjct  235  LSGGKDFE  242


>CDD:466033 pfam19305, MmgE_PrpD_C, MmgE/PrpD C-terminal domain.  This entry 
represents the C-terminal domain of 2-methylcitrate dehydratase 
EC:4.2.1.79 (PrpD) that is required for propionate catabolism. 
It catalyses the third step of the 2-methylcitric 
acid cycle. This domain is related to the serine dehydratase 
beta chain.
Length=173

 Score = 134 bits (339),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 62/171 (36%), Positives = 91/171 (53%), Gaps = 13/171 (8%)

Query  147  PVEGHGIAAVEAALVQLGKLRAR-GLGPGCIARVEVRTTQAADLIINKRGPLCNAADRDH  205
            P E H   A++AAL    +L    GL P  I  + +RT +AA  II K+GP    AD DH
Sbjct  2    PAERHTHTAIDAAL----QLHREHGLRPDDIESIVIRTHEAALRIIGKKGPPATRADADH  57

Query  206  CIQYVIALAFLKGSPPEVSDYRDESYWAESEELASLRERIFIHVDEHLTRDYLDLNKKSI  265
             +QYV+A+A L G    + D+ DE   A    + +LR+++ +  D   T DY +  K+SI
Sbjct  58   SLQYVVAVALLDGR-LTLEDFEDER--AADPRIDALRDKVEVVEDPEFTADYPE--KRSI  112

Query  266  GSVLTVHLQDGSELAEVLIEYPAGHVRNPATARAVQEKFTKNMRLMFTETE  316
               + + L DG    EV +EYP GH R P +   ++EKF +    +  E+E
Sbjct  113  ---VVIVLLDGGRTLEVRVEYPKGHPRRPLSREELEEKFRRLAAGVLPESE  160



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00012627

Length=116
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  89.2    2e-24


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 89.2 bits (222),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 46/110 (42%), Gaps = 6/110 (5%)

Query  5    ASFAFFEALWEAGVTHAFVNLGSDHPSILEAMVKGQKEKPDQFPKIITCPNEMVALSMAD  64
             + A  + L   GV   F   G     +L+A+ K          + +   +E  A   AD
Sbjct  1    GAEALADVLKALGVDTVFGVPGGHILPLLDALAKSPG------IRYVLTRHEQGAAFAAD  54

Query  65   GYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGLSPFTIEG  114
            GYAR TGKP  V+V    G       + NA     P+L+ +G  P ++ G
Sbjct  55   GYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVG  104



Lambda      K        H        a         alpha
   0.322    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00018412

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  148     2e-42
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  69.5    1e-14
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  61.1    1e-11


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 148 bits (375),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 76/183 (42%), Gaps = 15/183 (8%)

Query  5    ASFAFFEALWEAGVTHAFVNLGSDHPSILEAMVKGQKEKPDQFPKIITCPNEMVALSMAD  64
             + A  + L   GV   F   G     +L+A+ K          + +   +E  A   AD
Sbjct  1    GAEALADVLKALGVDTVFGVPGGHILPLLDALAKSPG------IRYVLTRHEQGAAFAAD  54

Query  65   GYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGLSPFTIEGEMRGSRTEYI  124
            GYAR TGKP  V+V    G       + NA     P+L+ +G  P ++ G          
Sbjct  55   GYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVG---------R  105

Query  125  HWIQDVPDQKQIVSQYCRYTAEIKSGKNIKQMVNRALQFATSDPKGPVYLTGAREVMEEE  184
              +Q   DQ  +     ++   + S   I +++ RA + A S   GPVYL    +V+ EE
Sbjct  106  GALQQELDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDVLLEE  165

Query  185  IEP  187
            ++ 
Sbjct  166  VDE  168


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 69.5 bits (171),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (48%), Gaps = 15/117 (13%)

Query  206  EAVELITSHLAAAKEPLAIVGYSGRSARGVKELVTLADTFKGLRVLDTGGSDMCFPGDHP  265
            +A EL+      AK P+ + G   R +   +EL  LA+   G+ V+ T      FP DHP
Sbjct  3    KAAELL----KKAKRPVILAGGGVRRSGASEELRELAEKL-GIPVVTTLMGKGAFPEDHP  57

Query  266  ASLGLRYGVH------DAIKTADFILVADCDVPWIPTQCKPSD---SAKIIHIDVDP  313
              LG   G+H      +A++ AD +L        I T  K  +    AKIIHID+DP
Sbjct  58   LYLG-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDP  113


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 61.1 bits (149),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  464  NKGKFVCQVVGDGTFLFSVPGSVYWIARRYNIPVLTIVLNNRGWNAPRRSMLLVHPNGDG  523
               + V  + GDG F  ++       A RYN+P+  +VLNN G+   R       P G G
Sbjct  44   RPDRPVVAIAGDGGFQMNLQE--LATAVRYNLPITVVVLNNGGYGMTRGQQ---TPFGGG  98

Query  524  SRATNEDLNISFAPTPDYSGIAKAAAGGELWAGRVATVAELGKLLPEAIQS  574
              +      +   P  D++ +A+ A G +    RV +  EL + L EA++ 
Sbjct  99   RYSGPSGKIL---PPVDFAKLAE-AYGAK--GARVESPEELEEALKEALEH  143



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00012628

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  148     2e-42
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  69.5    1e-14
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  61.1    1e-11


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 148 bits (375),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 76/183 (42%), Gaps = 15/183 (8%)

Query  5    ASFAFFEALWEAGVTHAFVNLGSDHPSILEAMVKGQKEKPDQFPKIITCPNEMVALSMAD  64
             + A  + L   GV   F   G     +L+A+ K          + +   +E  A   AD
Sbjct  1    GAEALADVLKALGVDTVFGVPGGHILPLLDALAKSPG------IRYVLTRHEQGAAFAAD  54

Query  65   GYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGLSPFTIEGEMRGSRTEYI  124
            GYAR TGKP  V+V    G       + NA     P+L+ +G  P ++ G          
Sbjct  55   GYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVG---------R  105

Query  125  HWIQDVPDQKQIVSQYCRYTAEIKSGKNIKQMVNRALQFATSDPKGPVYLTGAREVMEEE  184
              +Q   DQ  +     ++   + S   I +++ RA + A S   GPVYL    +V+ EE
Sbjct  106  GALQQELDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDVLLEE  165

Query  185  IEP  187
            ++ 
Sbjct  166  VDE  168


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 69.5 bits (171),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (48%), Gaps = 15/117 (13%)

Query  206  EAVELITSHLAAAKEPLAIVGYSGRSARGVKELVTLADTFKGLRVLDTGGSDMCFPGDHP  265
            +A EL+      AK P+ + G   R +   +EL  LA+   G+ V+ T      FP DHP
Sbjct  3    KAAELL----KKAKRPVILAGGGVRRSGASEELRELAEKL-GIPVVTTLMGKGAFPEDHP  57

Query  266  ASLGLRYGVH------DAIKTADFILVADCDVPWIPTQCKPSD---SAKIIHIDVDP  313
              LG   G+H      +A++ AD +L        I T  K  +    AKIIHID+DP
Sbjct  58   LYLG-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDP  113


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 61.1 bits (149),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  464  NKGKFVCQVVGDGTFLFSVPGSVYWIARRYNIPVLTIVLNNRGWNAPRRSMLLVHPNGDG  523
               + V  + GDG F  ++       A RYN+P+  +VLNN G+   R       P G G
Sbjct  44   RPDRPVVAIAGDGGFQMNLQE--LATAVRYNLPITVVVLNNGGYGMTRGQQ---TPFGGG  98

Query  524  SRATNEDLNISFAPTPDYSGIAKAAAGGELWAGRVATVAELGKLLPEAIQS  574
              +      +   P  D++ +A+ A G +    RV +  EL + L EA++ 
Sbjct  99   RYSGPSGKIL---PPVDFAKLAE-AYGAK--GARVESPEELEEALKEALEH  143



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00018413

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  119     4e-32
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  69.1    1e-14
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  60.7    1e-11


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 119 bits (301),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 58/130 (45%), Gaps = 9/130 (7%)

Query  2    VALSMADGYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGLSPFTIEGEMR  61
             A   ADGYAR TGKP  V+V    G       + NA     P+L+ +G  P ++ G   
Sbjct  48   GAAFAADGYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVG---  104

Query  62   GSRTEYIHWIQDVPDQKQIVSQYCRYTAEIKSGKNIKQMVNRALQFATSDPKGPVYLTGA  121
                     +Q   DQ  +     ++   + S   I +++ RA + A S   GPVYL   
Sbjct  105  ------RGALQQELDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIP  158

Query  122  REVMEEEIEP  131
             +V+ EE++ 
Sbjct  159  LDVLLEEVDE  168


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 69.1 bits (170),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (48%), Gaps = 15/117 (13%)

Query  150  EAVELITSHLAAAKEPLAIVGYSGRSARGVKELVTLADTFKGLRVLDTGGSDMCFPGDHP  209
            +A EL+      AK P+ + G   R +   +EL  LA+   G+ V+ T      FP DHP
Sbjct  3    KAAELL----KKAKRPVILAGGGVRRSGASEELRELAEKL-GIPVVTTLMGKGAFPEDHP  57

Query  210  ASLGLRYGVH------DAIKTADFILVADCDVPWIPTQCKPSD---SAKIIHIDVDP  257
              LG   G+H      +A++ AD +L        I T  K  +    AKIIHID+DP
Sbjct  58   LYLG-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDP  113


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 60.7 bits (148),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  408  NKGKFVCQVVGDGTFLFSVPGSVYWIARRYNIPVLTIVLNNRGWNAPRRSMLLVHPNGDG  467
               + V  + GDG F  ++       A RYN+P+  +VLNN G+   R       P G G
Sbjct  44   RPDRPVVAIAGDGGFQMNLQE--LATAVRYNLPITVVVLNNGGYGMTRGQQ---TPFGGG  98

Query  468  SRATNEDLNISFAPTPDYSGIAKAAAGGELWAGRVATVAELGKLLPEAIQS  518
              +      +   P  D++ +A+ A G +    RV +  EL + L EA++ 
Sbjct  99   RYSGPSGKIL---PPVDFAKLAE-AYGAK--GARVESPEELEEALKEALEH  143



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682843766


Query= TCONS_00012629

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  148     2e-42
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  69.5    1e-14
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  61.1    1e-11


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 148 bits (375),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 76/183 (42%), Gaps = 15/183 (8%)

Query  5    ASFAFFEALWEAGVTHAFVNLGSDHPSILEAMVKGQKEKPDQFPKIITCPNEMVALSMAD  64
             + A  + L   GV   F   G     +L+A+ K          + +   +E  A   AD
Sbjct  1    GAEALADVLKALGVDTVFGVPGGHILPLLDALAKSPG------IRYVLTRHEQGAAFAAD  54

Query  65   GYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGLSPFTIEGEMRGSRTEYI  124
            GYAR TGKP  V+V    G       + NA     P+L+ +G  P ++ G          
Sbjct  55   GYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVG---------R  105

Query  125  HWIQDVPDQKQIVSQYCRYTAEIKSGKNIKQMVNRALQFATSDPKGPVYLTGAREVMEEE  184
              +Q   DQ  +     ++   + S   I +++ RA + A S   GPVYL    +V+ EE
Sbjct  106  GALQQELDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDVLLEE  165

Query  185  IEP  187
            ++ 
Sbjct  166  VDE  168


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 69.5 bits (171),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (48%), Gaps = 15/117 (13%)

Query  206  EAVELITSHLAAAKEPLAIVGYSGRSARGVKELVTLADTFKGLRVLDTGGSDMCFPGDHP  265
            +A EL+      AK P+ + G   R +   +EL  LA+   G+ V+ T      FP DHP
Sbjct  3    KAAELL----KKAKRPVILAGGGVRRSGASEELRELAEKL-GIPVVTTLMGKGAFPEDHP  57

Query  266  ASLGLRYGVH------DAIKTADFILVADCDVPWIPTQCKPSD---SAKIIHIDVDP  313
              LG   G+H      +A++ AD +L        I T  K  +    AKIIHID+DP
Sbjct  58   LYLG-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDP  113


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 61.1 bits (149),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  464  NKGKFVCQVVGDGTFLFSVPGSVYWIARRYNIPVLTIVLNNRGWNAPRRSMLLVHPNGDG  523
               + V  + GDG F  ++       A RYN+P+  +VLNN G+   R       P G G
Sbjct  44   RPDRPVVAIAGDGGFQMNLQE--LATAVRYNLPITVVVLNNGGYGMTRGQQ---TPFGGG  98

Query  524  SRATNEDLNISFAPTPDYSGIAKAAAGGELWAGRVATVAELGKLLPEAIQS  574
              +      +   P  D++ +A+ A G +    RV +  EL + L EA++ 
Sbjct  99   RYSGPSGKIL---PPVDFAKLAE-AYGAK--GARVESPEELEEALKEALEH  143



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00018414

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  148     2e-42
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  69.5    1e-14
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  61.1    1e-11


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 148 bits (375),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 76/183 (42%), Gaps = 15/183 (8%)

Query  5    ASFAFFEALWEAGVTHAFVNLGSDHPSILEAMVKGQKEKPDQFPKIITCPNEMVALSMAD  64
             + A  + L   GV   F   G     +L+A+ K          + +   +E  A   AD
Sbjct  1    GAEALADVLKALGVDTVFGVPGGHILPLLDALAKSPG------IRYVLTRHEQGAAFAAD  54

Query  65   GYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGLSPFTIEGEMRGSRTEYI  124
            GYAR TGKP  V+V    G       + NA     P+L+ +G  P ++ G          
Sbjct  55   GYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVG---------R  105

Query  125  HWIQDVPDQKQIVSQYCRYTAEIKSGKNIKQMVNRALQFATSDPKGPVYLTGAREVMEEE  184
              +Q   DQ  +     ++   + S   I +++ RA + A S   GPVYL    +V+ EE
Sbjct  106  GALQQELDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDVLLEE  165

Query  185  IEP  187
            ++ 
Sbjct  166  VDE  168


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 69.5 bits (171),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (48%), Gaps = 15/117 (13%)

Query  206  EAVELITSHLAAAKEPLAIVGYSGRSARGVKELVTLADTFKGLRVLDTGGSDMCFPGDHP  265
            +A EL+      AK P+ + G   R +   +EL  LA+   G+ V+ T      FP DHP
Sbjct  3    KAAELL----KKAKRPVILAGGGVRRSGASEELRELAEKL-GIPVVTTLMGKGAFPEDHP  57

Query  266  ASLGLRYGVH------DAIKTADFILVADCDVPWIPTQCKPSD---SAKIIHIDVDP  313
              LG   G+H      +A++ AD +L        I T  K  +    AKIIHID+DP
Sbjct  58   LYLG-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDP  113


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 61.1 bits (149),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  464  NKGKFVCQVVGDGTFLFSVPGSVYWIARRYNIPVLTIVLNNRGWNAPRRSMLLVHPNGDG  523
               + V  + GDG F  ++       A RYN+P+  +VLNN G+   R       P G G
Sbjct  44   RPDRPVVAIAGDGGFQMNLQE--LATAVRYNLPITVVVLNNGGYGMTRGQQ---TPFGGG  98

Query  524  SRATNEDLNISFAPTPDYSGIAKAAAGGELWAGRVATVAELGKLLPEAIQS  574
              +      +   P  D++ +A+ A G +    RV +  EL + L EA++ 
Sbjct  99   RYSGPSGKIL---PPVDFAKLAE-AYGAK--GARVESPEELEEALKEALEH  143



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00012630

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  148     2e-42
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  69.5    1e-14
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  61.1    1e-11


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 148 bits (375),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 76/183 (42%), Gaps = 15/183 (8%)

Query  5    ASFAFFEALWEAGVTHAFVNLGSDHPSILEAMVKGQKEKPDQFPKIITCPNEMVALSMAD  64
             + A  + L   GV   F   G     +L+A+ K          + +   +E  A   AD
Sbjct  1    GAEALADVLKALGVDTVFGVPGGHILPLLDALAKSPG------IRYVLTRHEQGAAFAAD  54

Query  65   GYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGLSPFTIEGEMRGSRTEYI  124
            GYAR TGKP  V+V    G       + NA     P+L+ +G  P ++ G          
Sbjct  55   GYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVG---------R  105

Query  125  HWIQDVPDQKQIVSQYCRYTAEIKSGKNIKQMVNRALQFATSDPKGPVYLTGAREVMEEE  184
              +Q   DQ  +     ++   + S   I +++ RA + A S   GPVYL    +V+ EE
Sbjct  106  GALQQELDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDVLLEE  165

Query  185  IEP  187
            ++ 
Sbjct  166  VDE  168


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 69.5 bits (171),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (48%), Gaps = 15/117 (13%)

Query  206  EAVELITSHLAAAKEPLAIVGYSGRSARGVKELVTLADTFKGLRVLDTGGSDMCFPGDHP  265
            +A EL+      AK P+ + G   R +   +EL  LA+   G+ V+ T      FP DHP
Sbjct  3    KAAELL----KKAKRPVILAGGGVRRSGASEELRELAEKL-GIPVVTTLMGKGAFPEDHP  57

Query  266  ASLGLRYGVH------DAIKTADFILVADCDVPWIPTQCKPSD---SAKIIHIDVDP  313
              LG   G+H      +A++ AD +L        I T  K  +    AKIIHID+DP
Sbjct  58   LYLG-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDP  113


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 61.1 bits (149),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  464  NKGKFVCQVVGDGTFLFSVPGSVYWIARRYNIPVLTIVLNNRGWNAPRRSMLLVHPNGDG  523
               + V  + GDG F  ++       A RYN+P+  +VLNN G+   R       P G G
Sbjct  44   RPDRPVVAIAGDGGFQMNLQE--LATAVRYNLPITVVVLNNGGYGMTRGQQ---TPFGGG  98

Query  524  SRATNEDLNISFAPTPDYSGIAKAAAGGELWAGRVATVAELGKLLPEAIQS  574
              +      +   P  D++ +A+ A G +    RV +  EL + L EA++ 
Sbjct  99   RYSGPSGKIL---PPVDFAKLAE-AYGAK--GARVESPEELEEALKEALEH  143



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00018416

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  148     2e-42
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  69.5    1e-14
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  61.1    1e-11


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 148 bits (375),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 76/183 (42%), Gaps = 15/183 (8%)

Query  5    ASFAFFEALWEAGVTHAFVNLGSDHPSILEAMVKGQKEKPDQFPKIITCPNEMVALSMAD  64
             + A  + L   GV   F   G     +L+A+ K          + +   +E  A   AD
Sbjct  1    GAEALADVLKALGVDTVFGVPGGHILPLLDALAKSPG------IRYVLTRHEQGAAFAAD  54

Query  65   GYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGLSPFTIEGEMRGSRTEYI  124
            GYAR TGKP  V+V    G       + NA     P+L+ +G  P ++ G          
Sbjct  55   GYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVG---------R  105

Query  125  HWIQDVPDQKQIVSQYCRYTAEIKSGKNIKQMVNRALQFATSDPKGPVYLTGAREVMEEE  184
              +Q   DQ  +     ++   + S   I +++ RA + A S   GPVYL    +V+ EE
Sbjct  106  GALQQELDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDVLLEE  165

Query  185  IEP  187
            ++ 
Sbjct  166  VDE  168


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 69.5 bits (171),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (48%), Gaps = 15/117 (13%)

Query  206  EAVELITSHLAAAKEPLAIVGYSGRSARGVKELVTLADTFKGLRVLDTGGSDMCFPGDHP  265
            +A EL+      AK P+ + G   R +   +EL  LA+   G+ V+ T      FP DHP
Sbjct  3    KAAELL----KKAKRPVILAGGGVRRSGASEELRELAEKL-GIPVVTTLMGKGAFPEDHP  57

Query  266  ASLGLRYGVH------DAIKTADFILVADCDVPWIPTQCKPSD---SAKIIHIDVDP  313
              LG   G+H      +A++ AD +L        I T  K  +    AKIIHID+DP
Sbjct  58   LYLG-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDP  113


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 61.1 bits (149),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  464  NKGKFVCQVVGDGTFLFSVPGSVYWIARRYNIPVLTIVLNNRGWNAPRRSMLLVHPNGDG  523
               + V  + GDG F  ++       A RYN+P+  +VLNN G+   R       P G G
Sbjct  44   RPDRPVVAIAGDGGFQMNLQE--LATAVRYNLPITVVVLNNGGYGMTRGQQ---TPFGGG  98

Query  524  SRATNEDLNISFAPTPDYSGIAKAAAGGELWAGRVATVAELGKLLPEAIQS  574
              +      +   P  D++ +A+ A G +    RV +  EL + L EA++ 
Sbjct  99   RYSGPSGKIL---PPVDFAKLAE-AYGAK--GARVESPEELEEALKEALEH  143



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00018415

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  148     2e-42
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  69.5    1e-14
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  61.1    1e-11


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 148 bits (375),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 76/183 (42%), Gaps = 15/183 (8%)

Query  5    ASFAFFEALWEAGVTHAFVNLGSDHPSILEAMVKGQKEKPDQFPKIITCPNEMVALSMAD  64
             + A  + L   GV   F   G     +L+A+ K          + +   +E  A   AD
Sbjct  1    GAEALADVLKALGVDTVFGVPGGHILPLLDALAKSPG------IRYVLTRHEQGAAFAAD  54

Query  65   GYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGLSPFTIEGEMRGSRTEYI  124
            GYAR TGKP  V+V    G       + NA     P+L+ +G  P ++ G          
Sbjct  55   GYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVG---------R  105

Query  125  HWIQDVPDQKQIVSQYCRYTAEIKSGKNIKQMVNRALQFATSDPKGPVYLTGAREVMEEE  184
              +Q   DQ  +     ++   + S   I +++ RA + A S   GPVYL    +V+ EE
Sbjct  106  GALQQELDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDVLLEE  165

Query  185  IEP  187
            ++ 
Sbjct  166  VDE  168


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 69.5 bits (171),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (48%), Gaps = 15/117 (13%)

Query  206  EAVELITSHLAAAKEPLAIVGYSGRSARGVKELVTLADTFKGLRVLDTGGSDMCFPGDHP  265
            +A EL+      AK P+ + G   R +   +EL  LA+   G+ V+ T      FP DHP
Sbjct  3    KAAELL----KKAKRPVILAGGGVRRSGASEELRELAEKL-GIPVVTTLMGKGAFPEDHP  57

Query  266  ASLGLRYGVH------DAIKTADFILVADCDVPWIPTQCKPSD---SAKIIHIDVDP  313
              LG   G+H      +A++ AD +L        I T  K  +    AKIIHID+DP
Sbjct  58   LYLG-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDP  113


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 61.1 bits (149),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  464  NKGKFVCQVVGDGTFLFSVPGSVYWIARRYNIPVLTIVLNNRGWNAPRRSMLLVHPNGDG  523
               + V  + GDG F  ++       A RYN+P+  +VLNN G+   R       P G G
Sbjct  44   RPDRPVVAIAGDGGFQMNLQE--LATAVRYNLPITVVVLNNGGYGMTRGQQ---TPFGGG  98

Query  524  SRATNEDLNISFAPTPDYSGIAKAAAGGELWAGRVATVAELGKLLPEAIQS  574
              +      +   P  D++ +A+ A G +    RV +  EL + L EA++ 
Sbjct  99   RYSGPSGKIL---PPVDFAKLAE-AYGAK--GARVESPEELEEALKEALEH  143



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00012631

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  119     4e-32
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  69.1    1e-14
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  60.7    1e-11


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 119 bits (301),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 58/130 (45%), Gaps = 9/130 (7%)

Query  2    VALSMADGYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGLSPFTIEGEMR  61
             A   ADGYAR TGKP  V+V    G       + NA     P+L+ +G  P ++ G   
Sbjct  48   GAAFAADGYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVG---  104

Query  62   GSRTEYIHWIQDVPDQKQIVSQYCRYTAEIKSGKNIKQMVNRALQFATSDPKGPVYLTGA  121
                     +Q   DQ  +     ++   + S   I +++ RA + A S   GPVYL   
Sbjct  105  ------RGALQQELDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIP  158

Query  122  REVMEEEIEP  131
             +V+ EE++ 
Sbjct  159  LDVLLEEVDE  168


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 69.1 bits (170),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (48%), Gaps = 15/117 (13%)

Query  150  EAVELITSHLAAAKEPLAIVGYSGRSARGVKELVTLADTFKGLRVLDTGGSDMCFPGDHP  209
            +A EL+      AK P+ + G   R +   +EL  LA+   G+ V+ T      FP DHP
Sbjct  3    KAAELL----KKAKRPVILAGGGVRRSGASEELRELAEKL-GIPVVTTLMGKGAFPEDHP  57

Query  210  ASLGLRYGVH------DAIKTADFILVADCDVPWIPTQCKPSD---SAKIIHIDVDP  257
              LG   G+H      +A++ AD +L        I T  K  +    AKIIHID+DP
Sbjct  58   LYLG-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDP  113


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 60.7 bits (148),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  408  NKGKFVCQVVGDGTFLFSVPGSVYWIARRYNIPVLTIVLNNRGWNAPRRSMLLVHPNGDG  467
               + V  + GDG F  ++       A RYN+P+  +VLNN G+   R       P G G
Sbjct  44   RPDRPVVAIAGDGGFQMNLQE--LATAVRYNLPITVVVLNNGGYGMTRGQQ---TPFGGG  98

Query  468  SRATNEDLNISFAPTPDYSGIAKAAAGGELWAGRVATVAELGKLLPEAIQS  518
              +      +   P  D++ +A+ A G +    RV +  EL + L EA++ 
Sbjct  99   RYSGPSGKIL---PPVDFAKLAE-AYGAK--GARVESPEELEEALKEALEH  143



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682843766


Query= TCONS_00018417

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  119     4e-32
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  69.1    1e-14
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  60.7    1e-11


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 119 bits (301),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 58/130 (45%), Gaps = 9/130 (7%)

Query  2    VALSMADGYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGLSPFTIEGEMR  61
             A   ADGYAR TGKP  V+V    G       + NA     P+L+ +G  P ++ G   
Sbjct  48   GAAFAADGYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVG---  104

Query  62   GSRTEYIHWIQDVPDQKQIVSQYCRYTAEIKSGKNIKQMVNRALQFATSDPKGPVYLTGA  121
                     +Q   DQ  +     ++   + S   I +++ RA + A S   GPVYL   
Sbjct  105  ------RGALQQELDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIP  158

Query  122  REVMEEEIEP  131
             +V+ EE++ 
Sbjct  159  LDVLLEEVDE  168


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 69.1 bits (170),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (48%), Gaps = 15/117 (13%)

Query  150  EAVELITSHLAAAKEPLAIVGYSGRSARGVKELVTLADTFKGLRVLDTGGSDMCFPGDHP  209
            +A EL+      AK P+ + G   R +   +EL  LA+   G+ V+ T      FP DHP
Sbjct  3    KAAELL----KKAKRPVILAGGGVRRSGASEELRELAEKL-GIPVVTTLMGKGAFPEDHP  57

Query  210  ASLGLRYGVH------DAIKTADFILVADCDVPWIPTQCKPSD---SAKIIHIDVDP  257
              LG   G+H      +A++ AD +L        I T  K  +    AKIIHID+DP
Sbjct  58   LYLG-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDP  113


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 60.7 bits (148),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  408  NKGKFVCQVVGDGTFLFSVPGSVYWIARRYNIPVLTIVLNNRGWNAPRRSMLLVHPNGDG  467
               + V  + GDG F  ++       A RYN+P+  +VLNN G+   R       P G G
Sbjct  44   RPDRPVVAIAGDGGFQMNLQE--LATAVRYNLPITVVVLNNGGYGMTRGQQ---TPFGGG  98

Query  468  SRATNEDLNISFAPTPDYSGIAKAAAGGELWAGRVATVAELGKLLPEAIQS  518
              +      +   P  D++ +A+ A G +    RV +  EL + L EA++ 
Sbjct  99   RYSGPSGKIL---PPVDFAKLAE-AYGAK--GARVESPEELEEALKEALEH  143



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682843766


Query= TCONS_00012633

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  119     4e-32
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  69.1    1e-14
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  60.7    1e-11


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 119 bits (301),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 58/130 (45%), Gaps = 9/130 (7%)

Query  2    VALSMADGYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGLSPFTIEGEMR  61
             A   ADGYAR TGKP  V+V    G       + NA     P+L+ +G  P ++ G   
Sbjct  48   GAAFAADGYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVG---  104

Query  62   GSRTEYIHWIQDVPDQKQIVSQYCRYTAEIKSGKNIKQMVNRALQFATSDPKGPVYLTGA  121
                     +Q   DQ  +     ++   + S   I +++ RA + A S   GPVYL   
Sbjct  105  ------RGALQQELDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIP  158

Query  122  REVMEEEIEP  131
             +V+ EE++ 
Sbjct  159  LDVLLEEVDE  168


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 69.1 bits (170),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (48%), Gaps = 15/117 (13%)

Query  150  EAVELITSHLAAAKEPLAIVGYSGRSARGVKELVTLADTFKGLRVLDTGGSDMCFPGDHP  209
            +A EL+      AK P+ + G   R +   +EL  LA+   G+ V+ T      FP DHP
Sbjct  3    KAAELL----KKAKRPVILAGGGVRRSGASEELRELAEKL-GIPVVTTLMGKGAFPEDHP  57

Query  210  ASLGLRYGVH------DAIKTADFILVADCDVPWIPTQCKPSD---SAKIIHIDVDP  257
              LG   G+H      +A++ AD +L        I T  K  +    AKIIHID+DP
Sbjct  58   LYLG-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDP  113


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 60.7 bits (148),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  408  NKGKFVCQVVGDGTFLFSVPGSVYWIARRYNIPVLTIVLNNRGWNAPRRSMLLVHPNGDG  467
               + V  + GDG F  ++       A RYN+P+  +VLNN G+   R       P G G
Sbjct  44   RPDRPVVAIAGDGGFQMNLQE--LATAVRYNLPITVVVLNNGGYGMTRGQQ---TPFGGG  98

Query  468  SRATNEDLNISFAPTPDYSGIAKAAAGGELWAGRVATVAELGKLLPEAIQS  518
              +      +   P  D++ +A+ A G +    RV +  EL + L EA++ 
Sbjct  99   RYSGPSGKIL---PPVDFAKLAE-AYGAK--GARVESPEELEEALKEALEH  143



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 682843766


Query= TCONS_00012632

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  119     4e-32
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  69.1    1e-14
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  60.7    1e-11


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 119 bits (301),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 58/130 (45%), Gaps = 9/130 (7%)

Query  2    VALSMADGYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGLSPFTIEGEMR  61
             A   ADGYAR TGKP  V+V    G       + NA     P+L+ +G  P ++ G   
Sbjct  48   GAAFAADGYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVG---  104

Query  62   GSRTEYIHWIQDVPDQKQIVSQYCRYTAEIKSGKNIKQMVNRALQFATSDPKGPVYLTGA  121
                     +Q   DQ  +     ++   + S   I +++ RA + A S   GPVYL   
Sbjct  105  ------RGALQQELDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIP  158

Query  122  REVMEEEIEP  131
             +V+ EE++ 
Sbjct  159  LDVLLEEVDE  168


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 69.1 bits (170),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (48%), Gaps = 15/117 (13%)

Query  150  EAVELITSHLAAAKEPLAIVGYSGRSARGVKELVTLADTFKGLRVLDTGGSDMCFPGDHP  209
            +A EL+      AK P+ + G   R +   +EL  LA+   G+ V+ T      FP DHP
Sbjct  3    KAAELL----KKAKRPVILAGGGVRRSGASEELRELAEKL-GIPVVTTLMGKGAFPEDHP  57

Query  210  ASLGLRYGVH------DAIKTADFILVADCDVPWIPTQCKPSD---SAKIIHIDVDP  257
              LG   G+H      +A++ AD +L        I T  K  +    AKIIHID+DP
Sbjct  58   LYLG-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDP  113


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 60.7 bits (148),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  408  NKGKFVCQVVGDGTFLFSVPGSVYWIARRYNIPVLTIVLNNRGWNAPRRSMLLVHPNGDG  467
               + V  + GDG F  ++       A RYN+P+  +VLNN G+   R       P G G
Sbjct  44   RPDRPVVAIAGDGGFQMNLQE--LATAVRYNLPITVVVLNNGGYGMTRGQQ---TPFGGG  98

Query  468  SRATNEDLNISFAPTPDYSGIAKAAAGGELWAGRVATVAELGKLLPEAIQS  518
              +      +   P  D++ +A+ A G +    RV +  EL + L EA++ 
Sbjct  99   RYSGPSGKIL---PPVDFAKLAE-AYGAK--GARVESPEELEEALKEALEH  143



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682843766


Query= TCONS_00018418

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  119     4e-32
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  69.1    1e-14
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  60.7    1e-11


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 119 bits (301),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 58/130 (45%), Gaps = 9/130 (7%)

Query  2    VALSMADGYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGLSPFTIEGEMR  61
             A   ADGYAR TGKP  V+V    G       + NA     P+L+ +G  P ++ G   
Sbjct  48   GAAFAADGYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVG---  104

Query  62   GSRTEYIHWIQDVPDQKQIVSQYCRYTAEIKSGKNIKQMVNRALQFATSDPKGPVYLTGA  121
                     +Q   DQ  +     ++   + S   I +++ RA + A S   GPVYL   
Sbjct  105  ------RGALQQELDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIP  158

Query  122  REVMEEEIEP  131
             +V+ EE++ 
Sbjct  159  LDVLLEEVDE  168


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 69.1 bits (170),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (48%), Gaps = 15/117 (13%)

Query  150  EAVELITSHLAAAKEPLAIVGYSGRSARGVKELVTLADTFKGLRVLDTGGSDMCFPGDHP  209
            +A EL+      AK P+ + G   R +   +EL  LA+   G+ V+ T      FP DHP
Sbjct  3    KAAELL----KKAKRPVILAGGGVRRSGASEELRELAEKL-GIPVVTTLMGKGAFPEDHP  57

Query  210  ASLGLRYGVH------DAIKTADFILVADCDVPWIPTQCKPSD---SAKIIHIDVDP  257
              LG   G+H      +A++ AD +L        I T  K  +    AKIIHID+DP
Sbjct  58   LYLG-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDP  113


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 60.7 bits (148),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  408  NKGKFVCQVVGDGTFLFSVPGSVYWIARRYNIPVLTIVLNNRGWNAPRRSMLLVHPNGDG  467
               + V  + GDG F  ++       A RYN+P+  +VLNN G+   R       P G G
Sbjct  44   RPDRPVVAIAGDGGFQMNLQE--LATAVRYNLPITVVVLNNGGYGMTRGQQ---TPFGGG  98

Query  468  SRATNEDLNISFAPTPDYSGIAKAAAGGELWAGRVATVAELGKLLPEAIQS  518
              +      +   P  D++ +A+ A G +    RV +  EL + L EA++ 
Sbjct  99   RYSGPSGKIL---PPVDFAKLAE-AYGAK--GARVESPEELEEALKEALEH  143



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682843766


Query= TCONS_00012634

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  148     3e-42
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  69.1    1e-14
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  61.1    1e-11


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 148 bits (375),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 76/183 (42%), Gaps = 15/183 (8%)

Query  23   ASFAFFEALWEAGVTHAFVNLGSDHPSILEAMVKGQKEKPDQFPKIITCPNEMVALSMAD  82
             + A  + L   GV   F   G     +L+A+ K          + +   +E  A   AD
Sbjct  1    GAEALADVLKALGVDTVFGVPGGHILPLLDALAKSPG------IRYVLTRHEQGAAFAAD  54

Query  83   GYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGLSPFTIEGEMRGSRTEYI  142
            GYAR TGKP  V+V    G       + NA     P+L+ +G  P ++ G          
Sbjct  55   GYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVG---------R  105

Query  143  HWIQDVPDQKQIVSQYCRYTAEIKSGKNIKQMVNRALQFATSDPKGPVYLTGAREVMEEE  202
              +Q   DQ  +     ++   + S   I +++ RA + A S   GPVYL    +V+ EE
Sbjct  106  GALQQELDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDVLLEE  165

Query  203  IEP  205
            ++ 
Sbjct  166  VDE  168


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 69.1 bits (170),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (48%), Gaps = 15/117 (13%)

Query  224  EAVELITSHLAAAKEPLAIVGYSGRSARGVKELVTLADTFKGLRVLDTGGSDMCFPGDHP  283
            +A EL+      AK P+ + G   R +   +EL  LA+   G+ V+ T      FP DHP
Sbjct  3    KAAELL----KKAKRPVILAGGGVRRSGASEELRELAEKL-GIPVVTTLMGKGAFPEDHP  57

Query  284  ASLGLRYGVH------DAIKTADFILVADCDVPWIPTQCKPSD---SAKIIHIDVDP  331
              LG   G+H      +A++ AD +L        I T  K  +    AKIIHID+DP
Sbjct  58   LYLG-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDP  113


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 61.1 bits (149),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  482  NKGKFVCQVVGDGTFLFSVPGSVYWIARRYNIPVLTIVLNNRGWNAPRRSMLLVHPNGDG  541
               + V  + GDG F  ++       A RYN+P+  +VLNN G+   R       P G G
Sbjct  44   RPDRPVVAIAGDGGFQMNLQE--LATAVRYNLPITVVVLNNGGYGMTRGQQ---TPFGGG  98

Query  542  SRATNEDLNISFAPTPDYSGIAKAAAGGELWAGRVATVAELGKLLPEAIQS  592
              +      +   P  D++ +A+ A G +    RV +  EL + L EA++ 
Sbjct  99   RYSGPSGKIL---PPVDFAKLAE-AYGAK--GARVESPEELEEALKEALEH  143



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 783080272


Query= TCONS_00018419

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  139     6e-39
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  69.5    1e-14
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  61.1    1e-11


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 139 bits (352),  Expect = 6e-39, Method: Composition-based stats.
 Identities = 47/183 (26%), Positives = 76/183 (42%), Gaps = 15/183 (8%)

Query  23   ASFAFFEALWEVGSFHAFVNLGSDHPSILEAMVKGQKEKPDQFPKIITCPNEMVALSMAD  82
             + A  + L  +G    F   G     +L+A+ K          + +   +E  A   AD
Sbjct  1    GAEALADVLKALGVDTVFGVPGGHILPLLDALAKSPG------IRYVLTRHEQGAAFAAD  54

Query  83   GYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGLSPFTIEGEMRGSRTEYI  142
            GYAR TGKP  V+V    G       + NA     P+L+ +G  P ++ G          
Sbjct  55   GYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVG---------R  105

Query  143  HWIQDVPDQKQIVSQYCRYTAEIKSGKNIKQMVNRALQFATSDPKGPVYLTGAREVMEEE  202
              +Q   DQ  +     ++   + S   I +++ RA + A S   GPVYL    +V+ EE
Sbjct  106  GALQQELDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDVLLEE  165

Query  203  IEP  205
            ++ 
Sbjct  166  VDE  168


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 69.5 bits (171),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (48%), Gaps = 15/117 (13%)

Query  224  EAVELITSHLAAAKEPLAIVGYSGRSARGVKELVTLADTFKGLRVLDTGGSDMCFPGDHP  283
            +A EL+      AK P+ + G   R +   +EL  LA+   G+ V+ T      FP DHP
Sbjct  3    KAAELL----KKAKRPVILAGGGVRRSGASEELRELAEKL-GIPVVTTLMGKGAFPEDHP  57

Query  284  ASLGLRYGVH------DAIKTADFILVADCDVPWIPTQCKPSD---SAKIIHIDVDP  331
              LG   G+H      +A++ AD +L        I T  K  +    AKIIHID+DP
Sbjct  58   LYLG-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDP  113


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 61.1 bits (149),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  482  NKGKFVCQVVGDGTFLFSVPGSVYWIARRYNIPVLTIVLNNRGWNAPRRSMLLVHPNGDG  541
               + V  + GDG F  ++       A RYN+P+  +VLNN G+   R       P G G
Sbjct  44   RPDRPVVAIAGDGGFQMNLQE--LATAVRYNLPITVVVLNNGGYGMTRGQQ---TPFGGG  98

Query  542  SRATNEDLNISFAPTPDYSGIAKAAAGGELWAGRVATVAELGKLLPEAIQS  592
              +      +   P  D++ +A+ A G +    RV +  EL + L EA++ 
Sbjct  99   RYSGPSGKIL---PPVDFAKLAE-AYGAK--GARVESPEELEEALKEALEH  143



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 783080272


Query= TCONS_00018420

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  130     7e-36
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  69.5    9e-15
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  61.1    1e-11


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 130 bits (328),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 39/140 (28%), Positives = 62/140 (44%), Gaps = 9/140 (6%)

Query  13   PKIITCPNEMVALSMADGYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGL  72
             + +   +E  A   ADGYAR TGKP  V+V    G       + NA     P+L+ +G 
Sbjct  38   IRYVLTRHEQGAAFAADGYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQ  97

Query  73   SPFTIEGEMRGSRTEYIHWIQDVPDQKQIVSQYCRYTAEIKSGKNIKQMVNRALQFATSD  132
             P ++ G            +Q   DQ  +     ++   + S   I +++ RA + A S 
Sbjct  98   RPRSLVG---------RGALQQELDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSG  148

Query  133  PKGPVYLTGAREVMEEEIEP  152
              GPVYL    +V+ EE++ 
Sbjct  149  RPGPVYLEIPLDVLLEEVDE  168


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 69.5 bits (171),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (48%), Gaps = 15/117 (13%)

Query  171  EAVELITSHLAAAKEPLAIVGYSGRSARGVKELVTLADTFKGLRVLDTGGSDMCFPGDHP  230
            +A EL+      AK P+ + G   R +   +EL  LA+   G+ V+ T      FP DHP
Sbjct  3    KAAELL----KKAKRPVILAGGGVRRSGASEELRELAEKL-GIPVVTTLMGKGAFPEDHP  57

Query  231  ASLGLRYGVH------DAIKTADFILVADCDVPWIPTQCKPSD---SAKIIHIDVDP  278
              LG   G+H      +A++ AD +L        I T  K  +    AKIIHID+DP
Sbjct  58   LYLG-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDP  113


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 61.1 bits (149),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  429  NKGKFVCQVVGDGTFLFSVPGSVYWIARRYNIPVLTIVLNNRGWNAPRRSMLLVHPNGDG  488
               + V  + GDG F  ++       A RYN+P+  +VLNN G+   R       P G G
Sbjct  44   RPDRPVVAIAGDGGFQMNLQE--LATAVRYNLPITVVVLNNGGYGMTRGQQ---TPFGGG  98

Query  489  SRATNEDLNISFAPTPDYSGIAKAAAGGELWAGRVATVAELGKLLPEAIQS  539
              +      +   P  D++ +A+ A G +    RV +  EL + L EA++ 
Sbjct  99   RYSGPSGKIL---PPVDFAKLAE-AYGAK--GARVESPEELEEALKEALEH  143



Lambda      K        H        a         alpha
   0.317    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 703875588


Query= TCONS_00018421

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  117     2e-31
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  69.1    1e-14
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  61.1    1e-11


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 117 bits (296),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 9/126 (7%)

Query  1    MADGYARLTGKPQCVIVHVDVGTQGLAAAVHNASCGRAPVLIFAGLSPFTIEGEMRGSRT  60
             ADGYAR TGKP  V+V    G       + NA     P+L+ +G  P ++ G       
Sbjct  52   AADGYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVG-------  104

Query  61   EYIHWIQDVPDQKQIVSQYCRYTAEIKSGKNIKQMVNRALQFATSDPKGPVYLTGAREVM  120
                 +Q   DQ  +     ++   + S   I +++ RA + A S   GPVYL    +V+
Sbjct  105  --RGALQQELDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDVL  162

Query  121  EEEIEP  126
             EE++ 
Sbjct  163  LEEVDE  168


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 69.1 bits (170),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 56/117 (48%), Gaps = 15/117 (13%)

Query  145  EAVELITSHLAAAKEPLAIVGYSGRSARGVKELVTLADTFKGLRVLDTGGSDMCFPGDHP  204
            +A EL+      AK P+ + G   R +   +EL  LA+   G+ V+ T      FP DHP
Sbjct  3    KAAELL----KKAKRPVILAGGGVRRSGASEELRELAEKL-GIPVVTTLMGKGAFPEDHP  57

Query  205  ASLGLRYGVH------DAIKTADFILVADCDVPWIPTQCKPSD---SAKIIHIDVDP  252
              LG   G+H      +A++ AD +L        I T  K  +    AKIIHID+DP
Sbjct  58   LYLG-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDP  113


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 61.1 bits (149),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (10%)

Query  403  NKGKFVCQVVGDGTFLFSVPGSVYWIARRYNIPVLTIVLNNRGWNAPRRSMLLVHPNGDG  462
               + V  + GDG F  ++       A RYN+P+  +VLNN G+   R       P G G
Sbjct  44   RPDRPVVAIAGDGGFQMNLQE--LATAVRYNLPITVVVLNNGGYGMTRGQQ---TPFGGG  98

Query  463  SRATNEDLNISFAPTPDYSGIAKAAAGGELWAGRVATVAELGKLLPEAIQS  513
              +      +   P  D++ +A+ A G +    RV +  EL + L EA++ 
Sbjct  99   RYSGPSGKIL---PPVDFAKLAE-AYGAK--GARVESPEELEEALKEALEH  143



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00012636

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  89.3    6e-20


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 89.3 bits (222),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 77/394 (20%), Positives = 137/394 (35%), Gaps = 73/394 (19%)

Query  134  VQAGRSLYDLEVALNYGQSTGSPQLLRFVTEHTELIHNPPY----ADWQCCLNAGSTYGW  189
             +A +          YG + G P+         + +   P      +      +G+    
Sbjct  20   AKAEKDALAGGTRNLYGPTDGHPE---LREALAKFLGRSPVLKLDREAAVVFGSGAGANI  76

Query  190  DTVLRMLCTRGDYILMEEYTFSSAKETALPLGVKVASVKMDAE---GLLPESLDEVLSNW  246
            + ++ +L   GD IL+   T++S    A   G +V    +       L  ++L+  L   
Sbjct  77   EALIFLLANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSNDFHLDFDALEAALKE-  135

Query  247  DEASRGSRKPFVLYTIPTGQNPTGATQQLERRKAVYKVAQKHDLIIVEDEPYY-FLQMQP  305
                    KP V+    +  NPTG    LE  + +  +A++H+++++ DE Y  F+    
Sbjct  136  --------KPKVVL-HTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFV----  182

Query  306  YTGPDREPVPPPASHDEFIKSLIPSYLSLDVDGRVLRLESFSKVLS-PGSRTGWIVGPEQ  364
            +  PD                       L     +L + SFSK     G R G+I+G   
Sbjct  183  FGSPDAVAT----------------RALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAA  226

Query  365  LVERFMRNCETGAQHPSGISQIVLFKLLDEHWGHSGYLDWLINLRMQYTGRRDAIVNACE  424
            ++ + +R         + +       L D           L  +R +   RRD + +  +
Sbjct  227  VISQ-LRKLARPFYSSTHLQAAAAAALSDPL----LVASELEEMRQRIKERRDYLRDGLQ  281

Query  425  KYLPKEIAKWN--PPAAGMFHWIEIDWQKHPAVASGKSREAIEEAVFHAAVNNGVLVSRG  482
                   A  +  P  AG F    +D    P  A   ++  +EE         GV V+ G
Sbjct  282  A------AGLSVLPSQAGFFLLTGLD----PETAKELAQVLLEEV--------GVYVTPG  323

Query  483  SWFTAAGHNEGNLFFRATFAAASSENIAEAIARF  516
            S     G      + R T A  + E + E +   
Sbjct  324  SSPGVPG------WLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.316    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00012635

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  89.3    6e-20


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 89.3 bits (222),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 77/394 (20%), Positives = 137/394 (35%), Gaps = 73/394 (19%)

Query  134  VQAGRSLYDLEVALNYGQSTGSPQLLRFVTEHTELIHNPPY----ADWQCCLNAGSTYGW  189
             +A +          YG + G P+         + +   P      +      +G+    
Sbjct  20   AKAEKDALAGGTRNLYGPTDGHPE---LREALAKFLGRSPVLKLDREAAVVFGSGAGANI  76

Query  190  DTVLRMLCTRGDYILMEEYTFSSAKETALPLGVKVASVKMDAE---GLLPESLDEVLSNW  246
            + ++ +L   GD IL+   T++S    A   G +V    +       L  ++L+  L   
Sbjct  77   EALIFLLANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSNDFHLDFDALEAALKE-  135

Query  247  DEASRGSRKPFVLYTIPTGQNPTGATQQLERRKAVYKVAQKHDLIIVEDEPYY-FLQMQP  305
                    KP V+    +  NPTG    LE  + +  +A++H+++++ DE Y  F+    
Sbjct  136  --------KPKVVL-HTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFV----  182

Query  306  YTGPDREPVPPPASHDEFIKSLIPSYLSLDVDGRVLRLESFSKVLS-PGSRTGWIVGPEQ  364
            +  PD                       L     +L + SFSK     G R G+I+G   
Sbjct  183  FGSPDAVAT----------------RALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAA  226

Query  365  LVERFMRNCETGAQHPSGISQIVLFKLLDEHWGHSGYLDWLINLRMQYTGRRDAIVNACE  424
            ++ + +R         + +       L D           L  +R +   RRD + +  +
Sbjct  227  VISQ-LRKLARPFYSSTHLQAAAAAALSDPL----LVASELEEMRQRIKERRDYLRDGLQ  281

Query  425  KYLPKEIAKWN--PPAAGMFHWIEIDWQKHPAVASGKSREAIEEAVFHAAVNNGVLVSRG  482
                   A  +  P  AG F    +D    P  A   ++  +EE         GV V+ G
Sbjct  282  A------AGLSVLPSQAGFFLLTGLD----PETAKELAQVLLEEV--------GVYVTPG  323

Query  483  SWFTAAGHNEGNLFFRATFAAASSENIAEAIARF  516
            S     G      + R T A  + E + E +   
Sbjct  324  SSPGVPG------WLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.316    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00018422

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  67.3    1e-12


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 67.3 bits (165),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 114/326 (35%), Gaps = 55/326 (17%)

Query  134  VQAGRSLYDLEVALNYGQSTGSPQLLRFVTEHTELIHNPPY----ADWQCCLNAGSTYGW  189
             +A +          YG + G P+         + +   P      +      +G+    
Sbjct  20   AKAEKDALAGGTRNLYGPTDGHPE---LREALAKFLGRSPVLKLDREAAVVFGSGAGANI  76

Query  190  DTVLRMLCTRGDYILMEEYTFSSAKETALPLGVKVASVKMDAE---GLLPESLDEVLSNW  246
            + ++ +L   GD IL+   T++S    A   G +V    +       L  ++L+  L   
Sbjct  77   EALIFLLANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSNDFHLDFDALEAALKE-  135

Query  247  DEASRGSRKPFVLYTIPTGQNPTGATQQLERRKAVYKVAQKHDLIIVEDEPYY-FLQMQP  305
                    KP V+    +  NPTG    LE  + +  +A++H+++++ DE Y  F+    
Sbjct  136  --------KPKVVL-HTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFV----  182

Query  306  YTGPDREPVPPPASHDEFIKSLIPSYLSLDVDGRVLRLESFSKVLS-PGSRTGWIVGPEQ  364
            +  PD                       L     +L + SFSK     G R G+I+G   
Sbjct  183  FGSPDAVAT----------------RALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAA  226

Query  365  LVERFMRNCETGAQHPSGISQIVLFKLLDEHWGHSGYLDWLINLRMQYTGRRDAIVNACE  424
            ++ + +R         + +       L D           L  +R +   RRD + +  +
Sbjct  227  VISQ-LRKLARPFYSSTHLQAAAAAALSDPL----LVASELEEMRQRIKERRDYLRDGLQ  281

Query  425  KYLPKEIAKWN--PPAAGMFHWIEID  448
                   A  +  P  AG F    +D
Sbjct  282  A------AGLSVLPSQAGFFLLTGLD  301



Lambda      K        H        a         alpha
   0.316    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00018423

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  89.3    6e-20


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 89.3 bits (222),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 77/394 (20%), Positives = 137/394 (35%), Gaps = 73/394 (19%)

Query  161  VQAGRSLYDLEVALNYGQSTGSPQLLRFVTEHTELIHNPPY----ADWQCCLNAGSTYGW  216
             +A +          YG + G P+         + +   P      +      +G+    
Sbjct  20   AKAEKDALAGGTRNLYGPTDGHPE---LREALAKFLGRSPVLKLDREAAVVFGSGAGANI  76

Query  217  DTVLRMLCTRGDYILMEEYTFSSAKETALPLGVKVASVKMDAE---GLLPESLDEVLSNW  273
            + ++ +L   GD IL+   T++S    A   G +V    +       L  ++L+  L   
Sbjct  77   EALIFLLANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSNDFHLDFDALEAALKE-  135

Query  274  DEASRGSRKPFVLYTIPTGQNPTGATQQLERRKAVYKVAQKHDLIIVEDEPYY-FLQMQP  332
                    KP V+    +  NPTG    LE  + +  +A++H+++++ DE Y  F+    
Sbjct  136  --------KPKVVL-HTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFV----  182

Query  333  YTGPDREPVPPPASHDEFIKSLIPSYLSLDVDGRVLRLESFSKVLS-PGSRTGWIVGPEQ  391
            +  PD                       L     +L + SFSK     G R G+I+G   
Sbjct  183  FGSPDAVAT----------------RALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAA  226

Query  392  LVERFMRNCETGAQHPSGISQIVLFKLLDEHWGHSGYLDWLINLRMQYTGRRDAIVNACE  451
            ++ + +R         + +       L D           L  +R +   RRD + +  +
Sbjct  227  VISQ-LRKLARPFYSSTHLQAAAAAALSDPL----LVASELEEMRQRIKERRDYLRDGLQ  281

Query  452  KYLPKEIAKWN--PPAAGMFHWIEIDWQKHPAVASGKSREAIEEAVFHAAVNNGVLVSRG  509
                   A  +  P  AG F    +D    P  A   ++  +EE         GV V+ G
Sbjct  282  A------AGLSVLPSQAGFFLLTGLD----PETAKELAQVLLEEV--------GVYVTPG  323

Query  510  SWFTAAGHNEGNLFFRATFAAASSENIAEAIARF  543
            S     G      + R T A  + E + E +   
Sbjct  324  SSPGVPG------WLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.316    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00012637

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  89.3    6e-20


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 89.3 bits (222),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 77/394 (20%), Positives = 137/394 (35%), Gaps = 73/394 (19%)

Query  134  VQAGRSLYDLEVALNYGQSTGSPQLLRFVTEHTELIHNPPY----ADWQCCLNAGSTYGW  189
             +A +          YG + G P+         + +   P      +      +G+    
Sbjct  20   AKAEKDALAGGTRNLYGPTDGHPE---LREALAKFLGRSPVLKLDREAAVVFGSGAGANI  76

Query  190  DTVLRMLCTRGDYILMEEYTFSSAKETALPLGVKVASVKMDAE---GLLPESLDEVLSNW  246
            + ++ +L   GD IL+   T++S    A   G +V    +       L  ++L+  L   
Sbjct  77   EALIFLLANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSNDFHLDFDALEAALKE-  135

Query  247  DEASRGSRKPFVLYTIPTGQNPTGATQQLERRKAVYKVAQKHDLIIVEDEPYY-FLQMQP  305
                    KP V+    +  NPTG    LE  + +  +A++H+++++ DE Y  F+    
Sbjct  136  --------KPKVVL-HTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFV----  182

Query  306  YTGPDREPVPPPASHDEFIKSLIPSYLSLDVDGRVLRLESFSKVLS-PGSRTGWIVGPEQ  364
            +  PD                       L     +L + SFSK     G R G+I+G   
Sbjct  183  FGSPDAVAT----------------RALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAA  226

Query  365  LVERFMRNCETGAQHPSGISQIVLFKLLDEHWGHSGYLDWLINLRMQYTGRRDAIVNACE  424
            ++ + +R         + +       L D           L  +R +   RRD + +  +
Sbjct  227  VISQ-LRKLARPFYSSTHLQAAAAAALSDPL----LVASELEEMRQRIKERRDYLRDGLQ  281

Query  425  KYLPKEIAKWN--PPAAGMFHWIEIDWQKHPAVASGKSREAIEEAVFHAAVNNGVLVSRG  482
                   A  +  P  AG F    +D    P  A   ++  +EE         GV V+ G
Sbjct  282  A------AGLSVLPSQAGFFLLTGLD----PETAKELAQVLLEEV--------GVYVTPG  323

Query  483  SWFTAAGHNEGNLFFRATFAAASSENIAEAIARF  516
            S     G      + R T A  + E + E +   
Sbjct  324  SSPGVPG------WLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.316    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00018424

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  75.4    7e-16


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 75.4 bits (186),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 118/329 (36%), Gaps = 66/329 (20%)

Query  1    MLCTRGDYILMEEYTFSSAKETALPLGVKVASVKMDAE---GLLPESLDEVLSNWDEASR  57
            +L   GD IL+   T++S    A   G +V    +       L  ++L+  L        
Sbjct  82   LLANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSNDFHLDFDALEAALKE------  135

Query  58   GSRKPFVLYTIPTGQNPTGATQQLERRKAVYKVAQKHDLIIVEDEPYY-FLQMQPYTGPD  116
               KP V+    +  NPTG    LE  + +  +A++H+++++ DE Y  F+    +  PD
Sbjct  136  ---KPKVVL-HTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFV----FGSPD  187

Query  117  REPVPPPASHDEFIKSLIPSYLSLDVDGRVLRLESFSKVLS-PGSRTGWIVGPEQLVERF  175
                                   L     +L + SFSK     G R G+I+G   ++ + 
Sbjct  188  AVAT----------------RALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVISQ-  230

Query  176  MRNCETGAQHPSGISQIVLFKLLDEHWGHSGYLDWLINLRMQYTGRRDAIVNACEKYLPK  235
            +R         + +       L D           L  +R +   RRD + +  +     
Sbjct  231  LRKLARPFYSSTHLQAAAAAALSDPL----LVASELEEMRQRIKERRDYLRDGLQA----  282

Query  236  EIAKWN--PPAAGMFHWIEIDWQKHPAVASGKSREAIEEAVFHAAVNNGVLVSRGSWFTA  293
              A  +  P  AG F    +D    P  A   ++  +EE         GV V+ GS    
Sbjct  283  --AGLSVLPSQAGFFLLTGLD----PETAKELAQVLLEEV--------GVYVTPGSSPGV  328

Query  294  AGHNEGNLFFRATFAAASSENIAEAIARF  322
             G      + R T A  + E + E +   
Sbjct  329  PG------WLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.318    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00012639

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  75.4    7e-16


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 75.4 bits (186),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 118/329 (36%), Gaps = 66/329 (20%)

Query  1    MLCTRGDYILMEEYTFSSAKETALPLGVKVASVKMDAE---GLLPESLDEVLSNWDEASR  57
            +L   GD IL+   T++S    A   G +V    +       L  ++L+  L        
Sbjct  82   LLANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSNDFHLDFDALEAALKE------  135

Query  58   GSRKPFVLYTIPTGQNPTGATQQLERRKAVYKVAQKHDLIIVEDEPYY-FLQMQPYTGPD  116
               KP V+    +  NPTG    LE  + +  +A++H+++++ DE Y  F+    +  PD
Sbjct  136  ---KPKVVL-HTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFV----FGSPD  187

Query  117  REPVPPPASHDEFIKSLIPSYLSLDVDGRVLRLESFSKVLS-PGSRTGWIVGPEQLVERF  175
                                   L     +L + SFSK     G R G+I+G   ++ + 
Sbjct  188  AVAT----------------RALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVISQ-  230

Query  176  MRNCETGAQHPSGISQIVLFKLLDEHWGHSGYLDWLINLRMQYTGRRDAIVNACEKYLPK  235
            +R         + +       L D           L  +R +   RRD + +  +     
Sbjct  231  LRKLARPFYSSTHLQAAAAAALSDPL----LVASELEEMRQRIKERRDYLRDGLQA----  282

Query  236  EIAKWN--PPAAGMFHWIEIDWQKHPAVASGKSREAIEEAVFHAAVNNGVLVSRGSWFTA  293
              A  +  P  AG F    +D    P  A   ++  +EE         GV V+ GS    
Sbjct  283  --AGLSVLPSQAGFFLLTGLD----PETAKELAQVLLEEV--------GVYVTPGSSPGV  328

Query  294  AGHNEGNLFFRATFAAASSENIAEAIARF  322
             G      + R T A  + E + E +   
Sbjct  329  PG------WLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.318    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00012640

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  89.3    6e-20


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 89.3 bits (222),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 77/394 (20%), Positives = 137/394 (35%), Gaps = 73/394 (19%)

Query  134  VQAGRSLYDLEVALNYGQSTGSPQLLRFVTEHTELIHNPPY----ADWQCCLNAGSTYGW  189
             +A +          YG + G P+         + +   P      +      +G+    
Sbjct  20   AKAEKDALAGGTRNLYGPTDGHPE---LREALAKFLGRSPVLKLDREAAVVFGSGAGANI  76

Query  190  DTVLRMLCTRGDYILMEEYTFSSAKETALPLGVKVASVKMDAE---GLLPESLDEVLSNW  246
            + ++ +L   GD IL+   T++S    A   G +V    +       L  ++L+  L   
Sbjct  77   EALIFLLANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSNDFHLDFDALEAALKE-  135

Query  247  DEASRGSRKPFVLYTIPTGQNPTGATQQLERRKAVYKVAQKHDLIIVEDEPYY-FLQMQP  305
                    KP V+    +  NPTG    LE  + +  +A++H+++++ DE Y  F+    
Sbjct  136  --------KPKVVL-HTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFV----  182

Query  306  YTGPDREPVPPPASHDEFIKSLIPSYLSLDVDGRVLRLESFSKVLS-PGSRTGWIVGPEQ  364
            +  PD                       L     +L + SFSK     G R G+I+G   
Sbjct  183  FGSPDAVAT----------------RALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAA  226

Query  365  LVERFMRNCETGAQHPSGISQIVLFKLLDEHWGHSGYLDWLINLRMQYTGRRDAIVNACE  424
            ++ + +R         + +       L D           L  +R +   RRD + +  +
Sbjct  227  VISQ-LRKLARPFYSSTHLQAAAAAALSDPL----LVASELEEMRQRIKERRDYLRDGLQ  281

Query  425  KYLPKEIAKWN--PPAAGMFHWIEIDWQKHPAVASGKSREAIEEAVFHAAVNNGVLVSRG  482
                   A  +  P  AG F    +D    P  A   ++  +EE         GV V+ G
Sbjct  282  A------AGLSVLPSQAGFFLLTGLD----PETAKELAQVLLEEV--------GVYVTPG  323

Query  483  SWFTAAGHNEGNLFFRATFAAASSENIAEAIARF  516
            S     G      + R T A  + E + E +   
Sbjct  324  SSPGVPG------WLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.316    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00018425

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  88.9    9e-20


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 88.9 bits (221),  Expect = 9e-20, Method: Composition-based stats.
 Identities = 77/391 (20%), Positives = 137/391 (35%), Gaps = 68/391 (17%)

Query  134  VQAGRSLYDLEVALNYGQSTGSPQLLRFVTE--HTEIHNPPYADWQCCLNAGSTYGWDTV  191
             +A +          YG + G P+L   + +            +      +G+    + +
Sbjct  20   AKAEKDALAGGTRNLYGPTDGHPELREALAKFLGRSPVLKLDREAAVVFGSGAGANIEAL  79

Query  192  LRMLCTRGDYILMEEYTFSSAKETALPLGVKVASVKMDAE---GLLPESLDEVLSNWDEA  248
            + +L   GD IL+   T++S    A   G +V    +       L  ++L+  L      
Sbjct  80   IFLLANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSNDFHLDFDALEAALKE----  135

Query  249  SRGSRKPFVLYTIPTGQNPTGATQQLERRKAVYKVAQKHDLIIVEDEPYY-FLQMQPYTG  307
                 KP V+    +  NPTG    LE  + +  +A++H+++++ DE Y  F+    +  
Sbjct  136  -----KPKVVL-HTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFV----FGS  185

Query  308  PDREPVPPPASHDEFIKSLIPSYLSLDVDGRVLRLESFSKVLS-PGSRTGWIVGPEQLVE  366
            PD                       L     +L + SFSK     G R G+I+G   ++ 
Sbjct  186  PDAVAT----------------RALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVIS  229

Query  367  RFMRNCETGAQHPSGISQIVLFKLLDEHWGHSGYLDWLINLRMQYTGRRDAIVNACEKYL  426
            + +R         + +       L D           L  +R +   RRD + +  +   
Sbjct  230  Q-LRKLARPFYSSTHLQAAAAAALSDPL----LVASELEEMRQRIKERRDYLRDGLQA--  282

Query  427  PKEIAKWN--PPAAGMFHWIEIDWQKHPAVASGKSREAIEEAVFHAAVNNGVLVSRGSWF  484
                A  +  P  AG F    +D    P  A   ++  +EE         GV V+ GS  
Sbjct  283  ----AGLSVLPSQAGFFLLTGLD----PETAKELAQVLLEEV--------GVYVTPGSSP  326

Query  485  TAAGHNEGNLFFRATFAAASSENIAEAIARF  515
               G      + R T A  + E + E +   
Sbjct  327  GVPG------WLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.316    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00012641

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  75.4    7e-16


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 75.4 bits (186),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 118/329 (36%), Gaps = 66/329 (20%)

Query  1    MLCTRGDYILMEEYTFSSAKETALPLGVKVASVKMDAE---GLLPESLDEVLSNWDEASR  57
            +L   GD IL+   T++S    A   G +V    +       L  ++L+  L        
Sbjct  82   LLANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSNDFHLDFDALEAALKE------  135

Query  58   GSRKPFVLYTIPTGQNPTGATQQLERRKAVYKVAQKHDLIIVEDEPYY-FLQMQPYTGPD  116
               KP V+    +  NPTG    LE  + +  +A++H+++++ DE Y  F+    +  PD
Sbjct  136  ---KPKVVL-HTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFV----FGSPD  187

Query  117  REPVPPPASHDEFIKSLIPSYLSLDVDGRVLRLESFSKVLS-PGSRTGWIVGPEQLVERF  175
                                   L     +L + SFSK     G R G+I+G   ++ + 
Sbjct  188  AVAT----------------RALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVISQ-  230

Query  176  MRNCETGAQHPSGISQIVLFKLLDEHWGHSGYLDWLINLRMQYTGRRDAIVNACEKYLPK  235
            +R         + +       L D           L  +R +   RRD + +  +     
Sbjct  231  LRKLARPFYSSTHLQAAAAAALSDPL----LVASELEEMRQRIKERRDYLRDGLQA----  282

Query  236  EIAKWN--PPAAGMFHWIEIDWQKHPAVASGKSREAIEEAVFHAAVNNGVLVSRGSWFTA  293
              A  +  P  AG F    +D    P  A   ++  +EE         GV V+ GS    
Sbjct  283  --AGLSVLPSQAGFFLLTGLD----PETAKELAQVLLEEV--------GVYVTPGSSPGV  328

Query  294  AGHNEGNLFFRATFAAASSENIAEAIARF  322
             G      + R T A  + E + E +   
Sbjct  329  PG------WLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.318    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00012642

Length=256


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00012643

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  75.4    5e-16


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 75.4 bits (186),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 41/96 (43%), Gaps = 7/96 (7%)

Query  1    MPPEMFSTRGEAHKYGSEVDVWAYGCTLFEFATGNPP--NSNLRERMQIGRQLNRTTPRL  58
            M PE+         YG +VDVW+ GC L+E  TG PP    N  E  ++           
Sbjct  127  MAPEVLGGNP----YGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII-DQPYAFPE  181

Query  59   ANEDYSEGLKDLVSFALESDPILRPTMADIMSHSYI  94
               + SE  KDL+   L+ DP  R T    + H + 
Sbjct  182  LPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217



Lambda      K        H        a         alpha
   0.311    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00012644

Length=882
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            156     2e-43
CDD:459660 pfam00069, Pkinase, Protein kinase domain                  144     1e-39


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 156 bits (397),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 75/279 (27%), Positives = 129/279 (46%), Gaps = 36/279 (13%)

Query  53   EFEELIGKGSYGRVYKGH-----QLHSRKVVAIKVMDIDSMDYKSVRDLKDESIKDFIHE  107
               E +G+G++G VYKG      +    KV A+K +   + +         E  +DF+ E
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKV-AVKTLKEGADE---------EEREDFLEE  51

Query  108  TKVMKQVKDAGAKNINELIEAISIHSQLWLVCEYCPGGSVRTLMRATGDKLEERFIIPIA  167
              +MK++      NI +L+   +    L++V EY PGG +   +R    KL  + ++ +A
Sbjct  52   ASIMKKLDH---PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMA  108

Query  168  RELAAGLRAIHEAGIIHRDIKAANILIHEEGRLQICDFGVAGVLQSHVDKRSTWIGT--P  225
             ++A G+  +     +HRD+ A N L+ E   ++I DFG++  +      R    G    
Sbjct  109  LQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPI  168

Query  226  HWMPPEMFSTRGEAHKYGSEVDVWAYGCTLFEFAT-GNPP-----NSNLRERMQIGRQLN  279
             WM PE         K+ S+ DVW++G  L+E  T G  P     N  + E ++ G +L 
Sbjct  169  KWMAPESLKDG----KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLP  224

Query  280  RTTPRLANEDYSEGLKDLVSFALESDPILRPTMADIMSH  318
            +  P    ++    L DL+      DP  RPT ++++  
Sbjct  225  Q--PENCPDE----LYDLMKQCWAYDPEDRPTFSELVED  257


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 144 bits (365),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 72/272 (26%), Positives = 108/272 (40%), Gaps = 57/272 (21%)

Query  52   YEFEELIGKGSYGRVYKGHQLHSRKVVAIKVMDIDSMDYKSVRDLKDESIKDFIHETKVM  111
            YE    +G GS+G VYK     + K+VAIK +            +K +  K+ + E K++
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIK--------KEKIKKKKDKNILREIKIL  52

Query  112  KQVKDAGAKNINELIEAISIHSQLWLVCEYCPGGSVRTLMRATGDKLEERFIIPIARELA  171
            K++      NI  L +A      L+LV EY  GGS+  L+   G    ER    I +++ 
Sbjct  53   KKLN---HPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKG-AFSEREAKFIMKQIL  108

Query  172  AGLRAIHEAGIIHRDIKAANILIHEEGRLQICDFGVAGVLQSHVDKRSTWIGTPHWMPPE  231
             GL +                                          +T++GTP +M PE
Sbjct  109  EGLESGSSL--------------------------------------TTFVGTPWYMAPE  130

Query  232  MFSTRGEAHKYGSEVDVWAYGCTLFEFATGNPP--NSNLRERMQIGRQLNRTTPRLANED  289
            +         YG +VDVW+ GC L+E  TG PP    N  E  ++              +
Sbjct  131  VLGGNP----YGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII-DQPYAFPELPSN  185

Query  290  YSEGLKDLVSFALESDPILRPTMADIMSHSYI  321
             SE  KDL+   L+ DP  R T    + H + 
Sbjct  186  LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217



Lambda      K        H        a         alpha
   0.313    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1129749518


Query= TCONS_00012645

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            124     2e-34
CDD:459660 pfam00069, Pkinase, Protein kinase domain                  83.4    1e-19


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 124 bits (314),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 51/191 (27%), Positives = 88/191 (46%), Gaps = 20/191 (10%)

Query  53   EFEELIGKGSYGRVYKGH-----QLHSRKVVAIKVMDIDSMDYKSVRDLKDESIKDFIHE  107
               E +G+G++G VYKG      +    KV A+K +   + +         E  +DF+ E
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKV-AVKTLKEGADE---------EEREDFLEE  51

Query  108  TKVMKQVKDAGAKNINELIEAISIHSQLWLVCEYCPGGSVRTLMRATGDKLEERFIIPIA  167
              +MK++      NI +L+   +    L++V EY PGG +   +R    KL  + ++ +A
Sbjct  52   ASIMKKLDH---PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMA  108

Query  168  RELAAGLRAIHEAGIIHRDIKAANILIHEEGRLQICDFGVAGVLQSHVDKRSTWIGT--P  225
             ++A G+  +     +HRD+ A N L+ E   ++I DFG++  +      R    G    
Sbjct  109  LQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPI  168

Query  226  HWMPPEMFSTR  236
             WM PE     
Sbjct  169  KWMAPESLKDG  179


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 83.4 bits (207),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 48/195 (25%), Positives = 75/195 (38%), Gaps = 54/195 (28%)

Query  52   YEFEELIGKGSYGRVYKGHQLHSRKVVAIKVMDIDSMDYKSVRDLKDESIKDFIHETKVM  111
            YE    +G GS+G VYK     + K+VAIK +            +K +  K+ + E K++
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIK--------KEKIKKKKDKNILREIKIL  52

Query  112  KQVKDAGAKNINELIEAISIHSQLWLVCEYCPGGSVRTLMRATGDKLEERFIIPIARELA  171
            K++      NI  L +A      L+LV EY  GGS+  L+   G    ER    I +++ 
Sbjct  53   KKLN---HPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKG-AFSEREAKFIMKQIL  108

Query  172  AGLRAIHEAGIIHRDIKAANILIHEEGRLQICDFGVAGVLQSHVDKRSTWIGTPHWMPPE  231
             GL +                                          +T++GTP +M PE
Sbjct  109  EGLESGSSL--------------------------------------TTFVGTPWYMAPE  130

Query  232  MFSTRGEAHKYGSEV  246
            +         YG +V
Sbjct  131  VLGGNP----YGPKV  141



Lambda      K        H        a         alpha
   0.319    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0759    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00018426

Length=163
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            63.7    2e-13


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 63.7 bits (156),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query  1    MRATGDKLEERFIIPIARELAAGLRAIHEAGIIHRDIKAANILIHEEGRLQICDFGVAGV  60
            +R    KL  + ++ +A ++A G+  +     +HRD+ A N L+ E   ++I DFG++  
Sbjct  92   LRKHKRKLTLKDLLSMALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRD  151

Query  61   LQSHVDKRSTWIGT--PHWMPPEMFSTR  86
            +      R    G     WM PE     
Sbjct  152  IYDDDYYRKRGGGKLPIKWMAPESLKDG  179



Lambda      K        H        a         alpha
   0.321    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00012646

Length=882
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            156     2e-43
CDD:459660 pfam00069, Pkinase, Protein kinase domain                  144     1e-39


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 156 bits (397),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 75/279 (27%), Positives = 129/279 (46%), Gaps = 36/279 (13%)

Query  53   EFEELIGKGSYGRVYKGH-----QLHSRKVVAIKVMDIDSMDYKSVRDLKDESIKDFIHE  107
               E +G+G++G VYKG      +    KV A+K +   + +         E  +DF+ E
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKV-AVKTLKEGADE---------EEREDFLEE  51

Query  108  TKVMKQVKDAGAKNINELIEAISIHSQLWLVCEYCPGGSVRTLMRATGDKLEERFIIPIA  167
              +MK++      NI +L+   +    L++V EY PGG +   +R    KL  + ++ +A
Sbjct  52   ASIMKKLDH---PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMA  108

Query  168  RELAAGLRAIHEAGIIHRDIKAANILIHEEGRLQICDFGVAGVLQSHVDKRSTWIGT--P  225
             ++A G+  +     +HRD+ A N L+ E   ++I DFG++  +      R    G    
Sbjct  109  LQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPI  168

Query  226  HWMPPEMFSTRGEAHKYGSEVDVWAYGCTLFEFAT-GNPP-----NSNLRERMQIGRQLN  279
             WM PE         K+ S+ DVW++G  L+E  T G  P     N  + E ++ G +L 
Sbjct  169  KWMAPESLKDG----KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLP  224

Query  280  RTTPRLANEDYSEGLKDLVSFALESDPILRPTMADIMSH  318
            +  P    ++    L DL+      DP  RPT ++++  
Sbjct  225  Q--PENCPDE----LYDLMKQCWAYDPEDRPTFSELVED  257


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 144 bits (365),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 72/272 (26%), Positives = 108/272 (40%), Gaps = 57/272 (21%)

Query  52   YEFEELIGKGSYGRVYKGHQLHSRKVVAIKVMDIDSMDYKSVRDLKDESIKDFIHETKVM  111
            YE    +G GS+G VYK     + K+VAIK +            +K +  K+ + E K++
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIK--------KEKIKKKKDKNILREIKIL  52

Query  112  KQVKDAGAKNINELIEAISIHSQLWLVCEYCPGGSVRTLMRATGDKLEERFIIPIARELA  171
            K++      NI  L +A      L+LV EY  GGS+  L+   G    ER    I +++ 
Sbjct  53   KKLN---HPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKG-AFSEREAKFIMKQIL  108

Query  172  AGLRAIHEAGIIHRDIKAANILIHEEGRLQICDFGVAGVLQSHVDKRSTWIGTPHWMPPE  231
             GL +                                          +T++GTP +M PE
Sbjct  109  EGLESGSSL--------------------------------------TTFVGTPWYMAPE  130

Query  232  MFSTRGEAHKYGSEVDVWAYGCTLFEFATGNPP--NSNLRERMQIGRQLNRTTPRLANED  289
            +         YG +VDVW+ GC L+E  TG PP    N  E  ++              +
Sbjct  131  VLGGNP----YGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII-DQPYAFPELPSN  185

Query  290  YSEGLKDLVSFALESDPILRPTMADIMSHSYI  321
             SE  KDL+   L+ DP  R T    + H + 
Sbjct  186  LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217



Lambda      K        H        a         alpha
   0.313    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1129749518


Query= TCONS_00012647

Length=319


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00012648

Length=395


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00012649

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00012650

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00012651

Length=292


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00018427

Length=434
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  207     1e-65
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            107     4e-27


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 207 bits (529),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 83/259 (32%), Positives = 124/259 (48%), Gaps = 45/259 (17%)

Query  39   YRFGRTLGAGTYGIVREA--ESSGGKVAIKIILKKNVRGNERM-VYDELEMLQALDHPNI  95
            Y   R LG+G++G V +A    +G  VAIK I K+ ++  +   +  E+++L+ L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  96   VHFVDWFESKDKFYIVTQLATGGELFDRICEYGKFTEKDASQTIRQVLDAVNYLHERNIV  155
            V   D FE KD  Y+V +   GG LFD + E G F+E++A   ++Q+L+ +         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE--------  112

Query  156  HRDLKPENLLYLTRDPKSPLVLADFGIAKMLENPTEVLTTMAGSFGYAAPEVMLKQGHGK  215
                                                 LTT  G+  Y APEV+    +G 
Sbjct  113  ---------------------------------SGSSLTTFVGTPWYMAPEVLGGNPYGP  139

Query  216  AVDLWSLGVITYTLLCGYSPFRSESLSDLIEECRAARIVFHERYWRDVSKDAKDFILSLL  275
             VD+WSLG I Y LL G  PF      + I E    +         ++S++AKD +  LL
Sbjct  140  KVDVWSLGCILYELLTGKPPF-PGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLL  198

Query  276  QPDPAKRPTSQDALKHPWL  294
            + DP+KR T+  AL+HPW 
Sbjct  199  KKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 107 bits (269),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 74/266 (28%), Positives = 115/266 (43%), Gaps = 38/266 (14%)

Query  40   RFGRTLGAGTYGIVREA------ESSGGKVAIKIILKKNVRGNER-MVYDELEMLQALDH  92
              G  LG G +G V +       E++  KVA+K  LK+     ER    +E  +++ LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKT-LKEGADEEEREDFLEEASIMKKLDH  60

Query  93   PNIVHFVDWFESKDKFYIVTQLATGGEL--FDRICEYGKFTEKDASQTIRQVLDAVNYLH  150
            PNIV  +      +  YIVT+   GG+L  F R  +  K T KD      Q+   + YL 
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHK-RKLTLKDLLSMALQIAKGMEYLE  119

Query  151  ERNIVHRDLKPENLLYLTRDPKSPLV-LADFGIAKMLENPTEVLTTMAGSFGYA--APEV  207
             +N VHRDL   N L ++ +     V ++DFG+++ + +         G       APE 
Sbjct  120  SKNFVHRDLAARNCL-VSENLV---VKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPES  175

Query  208  MLKQGHGK---AVDLWSLGVITYTLLC-GYSPFRSESLSDLIEECRAARIVFHERYWR--  261
            +     GK     D+WS GV+ + +   G  P+   S  +++E          + Y R  
Sbjct  176  LK---DGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLE-------FLEDGY-RLP  224

Query  262  ---DVSKDAKDFILSLLQPDPAKRPT  284
               +   +  D +      DP  RPT
Sbjct  225  QPENCPDELYDLMKQCWAYDPEDRPT  250



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 527594176


Query= TCONS_00018428

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  118     2e-33


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 118 bits (299),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 60/109 (55%), Gaps = 2/109 (2%)

Query  2    LENPTEVLTTMAGSFGYAAPEVMLKQGHGKAVDLWSLGVITYTLLCGYSPFRSESLSDLI  61
            LE+ +  LTT  G+  Y APEV+    +G  VD+WSLG I Y LL G  PF      + I
Sbjct  111  LESGSS-LTTFVGTPWYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPF-PGINGNEI  168

Query  62   EECRAARIVFHERYWRDVSKDAKDFILSLLQPDPAKRPTSQDALKHPWL  110
             E    +         ++S++AKD +  LL+ DP+KR T+  AL+HPW 
Sbjct  169  YELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217



Lambda      K        H        a         alpha
   0.313    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00012652

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00012653

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00018430

Length=292


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00018431

Length=157
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  109     5e-32


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 109 bits (275),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 50/127 (39%), Positives = 70/127 (55%), Gaps = 13/127 (10%)

Query  6    RLSKELLKMKEHLPPGISI-VKDDNLEEWQMDIKVLDDNPLYKDQTYRLKFTFGSKYPIE  64
            RL KEL ++ +  PPGIS    DDNL EW++ I   D  P Y+   ++L   F   YP +
Sbjct  1    RLQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTP-YEGGVFKLSVEFPEDYPFK  59

Query  65   PPEVQFIELPSTSDTPRPIPMHPHIYSNGIICLDLLGSAGWSPVQTVESVCMSIQSMLTA  124
            PP+V+F               HP++ S+G +CLD+L    WSP  T+E V +SIQS+L+ 
Sbjct  60   PPKVKFT----------TKIYHPNVDSSGEVCLDILKDERWSPALTLEQVLLSIQSLLSE  109

Query  125  NNRNERP  131
             N  E P
Sbjct  110  PN-PEDP  115



Lambda      K        H        a         alpha
   0.318    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00018432

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00012654

Length=849
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462990 pfam10193, Telomere_reg-2, Telomere length regulation ...  156     2e-45


>CDD:462990 pfam10193, Telomere_reg-2, Telomere length regulation protein. 
 This family is the central conserved 110 amino acid region 
of a group of proteins called telomere-length regulation or 
clock abnormal protein-2 which are conserved from plants to 
humans. The full-length protein regulates telomere length 
and contributes to silencing of sub-telomeric regions. In vitro 
the protein binds to telomeric DNA repeats.
Length=112

 Score = 156 bits (397),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 60/112 (54%), Positives = 80/112 (71%), Gaps = 0/112 (0%)

Query  610  PVYIRDLITGLRDTENLERFELAVTTAPTLIRRKTGFGTELAENVEELALVLVGLQEQTK  669
            PVYIRDL+  LRD+E+ ERFELA+ TA  LIRRK  FGTE+ E  EELA +L+GLQ++  
Sbjct  1    PVYIRDLLEYLRDSEDYERFELALKTAEELIRRKADFGTEVDEYAEELAKLLLGLQDKFD  60

Query  670  LPKFHECRLQSMIALIVSQPLKMGRWFAAVFFDGDLSQTQRSAVLTALGLSA  721
            L  F E RL +++AL+V+ P K+  +    FF GD S  QR ++L+ALGL+A
Sbjct  61   LENFEELRLNALVALLVADPEKVAPYLTEEFFSGDYSLQQRISILSALGLAA  112



Lambda      K        H        a         alpha
   0.316    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1082377556


Query= TCONS_00012655

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460104 pfam01193, RNA_pol_L, RNA polymerase Rpb3/Rpb11 dimeri...  124     1e-34
CDD:425983 pfam01000, RNA_pol_A_bac, RNA polymerase Rpb3/RpoA ins...  72.3    3e-16


>CDD:460104 pfam01193, RNA_pol_L, RNA polymerase Rpb3/Rpb11 dimerization 
domain.  The two eukaryotic subunits Rpb3 and Rpb11 dimerize 
to from a platform onto which the other subunits of the RNA 
polymerase assemble (D/L in archaea). The prokaryotic equivalent 
of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The 
dimerization domain of the alpha subunit/Rpb3 is interrupted 
by an insert domain (pfam01000). Some of the alpha subunits 
also contain iron-sulphur binding domains (pfam00037). Rpb11 
is found as a continuous domain. Members of this family 
include: alpha subunit from eubacteria, alpha subunits from 
chloroplasts, Rpb3 subunits from eukaryotes, Rpb11 subunits 
from eukaryotes, RpoD subunits from archaeal spp, and RpoL 
subunits from archaeal spp.
Length=191

 Score = 124 bits (313),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 73/296 (25%), Positives = 91/296 (31%), Gaps = 105/296 (35%)

Query  66   FSLIGLDASIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSVEGL  125
            F L G D ++ NA RRIL++EVP +AI+ V +  NTS   DE  A RLGLIPL      L
Sbjct  1    FLLRGEDHTLGNALRRILLSEVPGVAIDAVKIEGNTSEFSDEPGAHRLGLIPL------L  54

Query  126  NWMRWFKKPTEDDPESGSTPADYNTIVLRLDVECTENPNAAPGEDDPRKLYKNAHVYAKD  185
            N    F K + DD E            L LD E      A     D              
Sbjct  55   NLKELFFKLSSDDDE-----------TLELDKEGPGEVTAGDINTDS-------------  90

Query  186  ITFHPVGRQEQFFTGDGAIQPVNPDILIAKLRPGQKIDMELHCIKGIGADHAKFSPVATA  245
                              I+ +NPD+ IA L     ++MEL  +KG G            
Sbjct  91   --------------DVEVIEIINPDLHIATLEEEAALEMELEVVKGRG------------  124

Query  246  TYRLMPDIKILRPIIGEDAKKFAKCFPKGVIELEPVTSREAAQKGSEYEGRAGEMKAVVR  305
                                                                 E    V 
Sbjct  125  -------------------------------------------------YVPAEKNKDVD  135

Query  306  DPFKDTVSRECLRHEEFQGKVKLGRIRDHFIFNVESTGQFESDYLFLESVKVLKLK  361
            DP  D          E    V      D  IF VE+ G    +    E+ K+LK K
Sbjct  136  DPIGDIPIDSIFSPVEKVNYVVENTDYDKLIFEVETDGSIPPEEALKEAAKILKEK  191


>CDD:425983 pfam01000, RNA_pol_A_bac, RNA polymerase Rpb3/RpoA insert domain. 
 Members of this family include: alpha subunit from eubacteria 
alpha subunits from chloroplasts Rpb3 subunits from 
eukaryotes RpoD subunits from archaeal.
Length=117

 Score = 72.3 bits (178),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 30/106 (28%)

Query  147  DYNTIVLRLDVECTENPNAAPGEDDPRKLYKNAHVYAKDITFHPVGRQEQFFTGDGAIQP  206
            +  ++ L LDV+        PGE           V A D+              D  ++ 
Sbjct  38   EECSVTLTLDVKG-------PGE-----------VTAGDLES------------DPDVEI  67

Query  207  VNPDILIAKLRPGQKIDMELHCIKGIGADHAKFSPVATATYRLMPD  252
            VNPDILIA LR GQ++++E +  KG G  HAK +       R+  D
Sbjct  68   VNPDILIATLRKGQELELEAYAKKGRGYVHAKENKEDEDPGRIPVD  113



Lambda      K        H        a         alpha
   0.319    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00012656

Length=1002
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462990 pfam10193, Telomere_reg-2, Telomere length regulation ...  156     3e-45


>CDD:462990 pfam10193, Telomere_reg-2, Telomere length regulation protein. 
 This family is the central conserved 110 amino acid region 
of a group of proteins called telomere-length regulation or 
clock abnormal protein-2 which are conserved from plants to 
humans. The full-length protein regulates telomere length 
and contributes to silencing of sub-telomeric regions. In vitro 
the protein binds to telomeric DNA repeats.
Length=112

 Score = 156 bits (397),  Expect = 3e-45, Method: Composition-based stats.
 Identities = 60/112 (54%), Positives = 80/112 (71%), Gaps = 0/112 (0%)

Query  610  PVYIRDLITGLRDTENLERFELAVTTAPTLIRRKTGFGTELAENVEELALVLVGLQEQTK  669
            PVYIRDL+  LRD+E+ ERFELA+ TA  LIRRK  FGTE+ E  EELA +L+GLQ++  
Sbjct  1    PVYIRDLLEYLRDSEDYERFELALKTAEELIRRKADFGTEVDEYAEELAKLLLGLQDKFD  60

Query  670  LPKFHECRLQSMIALIVSQPLKMGRWFAAVFFDGDLSQTQRSAVLTALGLSA  721
            L  F E RL +++AL+V+ P K+  +    FF GD S  QR ++L+ALGL+A
Sbjct  61   LENFEELRLNALVALLVADPEKVAPYLTEEFFSGDYSLQQRISILSALGLAA  112



Lambda      K        H        a         alpha
   0.317    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1282783656


Query= TCONS_00012657

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462990 pfam10193, Telomere_reg-2, Telomere length regulation ...  157     8e-48


>CDD:462990 pfam10193, Telomere_reg-2, Telomere length regulation protein. 
 This family is the central conserved 110 amino acid region 
of a group of proteins called telomere-length regulation or 
clock abnormal protein-2 which are conserved from plants to 
humans. The full-length protein regulates telomere length 
and contributes to silencing of sub-telomeric regions. In vitro 
the protein binds to telomeric DNA repeats.
Length=112

 Score = 157 bits (400),  Expect = 8e-48, Method: Composition-based stats.
 Identities = 60/112 (54%), Positives = 80/112 (71%), Gaps = 0/112 (0%)

Query  187  PVYIRDLITGLRDTENLERFELAVTTAPTLIRRKTGFGTELAENVEELALVLVGLQEQTK  246
            PVYIRDL+  LRD+E+ ERFELA+ TA  LIRRK  FGTE+ E  EELA +L+GLQ++  
Sbjct  1    PVYIRDLLEYLRDSEDYERFELALKTAEELIRRKADFGTEVDEYAEELAKLLLGLQDKFD  60

Query  247  LPKFHECRLQSMIALIVSQPLKMGRWFAAVFFDGDLSQTQRSAVLTALGLSA  298
            L  F E RL +++AL+V+ P K+  +    FF GD S  QR ++L+ALGL+A
Sbjct  61   LENFEELRLNALVALLVADPEKVAPYLTEEFFSGDYSLQQRISILSALGLAA  112



Lambda      K        H        a         alpha
   0.314    0.129    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00012660

Length=439


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00012658

Length=421


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.128    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00012659

Length=421


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.128    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00018433

Length=421


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.128    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00012661

Length=421


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.128    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00018434

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00012662

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00012663

Length=355


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00012664

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0865    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00012665

Length=355


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00018435

Length=1154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462634 pfam08920, SF3b1, Splicing factor 3B subunit 1. This f...  167     3e-49


>CDD:462634 pfam08920, SF3b1, Splicing factor 3B subunit 1.  This family 
consists of several eukaryotic splicing factor 3B subunit 1 
proteins, which associate with p14 through a C-terminus beta-strand 
that interacts with beta-3 of the p14 RNA recognition 
motif (RRM) beta-sheet, which is in turn connected to an alpha-helix 
by a loop that makes extensive contacts with both 
the shorter C-terminal helix and RRM of p14. This subunit is 
required for 'A' splicing complex assembly (formed by the 
stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) 
and 'E' splicing complex assembly.
Length=114

 Score = 167 bits (426),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 60/121 (50%), Positives = 68/121 (56%), Gaps = 19/121 (16%)

Query  169  KTKRSRWDQTPAPAVPGTTGEAPKRRSRWDQAPAITAATPVGNQGLATP-------MHPS  221
              +RSRWD+TPA A  G  G  P               TPVG  G+ATP       M P 
Sbjct  1    SKRRSRWDETPANAGSGPGGATPGETPG--------RQTPVGAMGMATPTPGALGPMTPE  52

Query  222  QVGVPMIPTSFGTDISGRNAPLSDEELDMMLPSEGYKILEPPPGYAPIRTPARKLMATPA  281
            Q    M    +  +I  RN PL+DEELD MLP EGYKIL+PP GY PIRTPARKL+ATP 
Sbjct  53   Q----MQAFRWEKEIDERNRPLTDEELDAMLPGEGYKILDPPAGYVPIRTPARKLLATPT  108

Query  282  P  282
            P
Sbjct  109  P  109



Lambda      K        H        a         alpha
   0.318    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1475823566


Query= TCONS_00018437

Length=1246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462634 pfam08920, SF3b1, Splicing factor 3B subunit 1. This f...  167     5e-49


>CDD:462634 pfam08920, SF3b1, Splicing factor 3B subunit 1.  This family 
consists of several eukaryotic splicing factor 3B subunit 1 
proteins, which associate with p14 through a C-terminus beta-strand 
that interacts with beta-3 of the p14 RNA recognition 
motif (RRM) beta-sheet, which is in turn connected to an alpha-helix 
by a loop that makes extensive contacts with both 
the shorter C-terminal helix and RRM of p14. This subunit is 
required for 'A' splicing complex assembly (formed by the 
stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) 
and 'E' splicing complex assembly.
Length=114

 Score = 167 bits (426),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 60/121 (50%), Positives = 68/121 (56%), Gaps = 19/121 (16%)

Query  261  KTKRSRWDQTPAPAVPGTTGEAPKRRSRWDQAPAITAATPVGNQGLATP-------MHPS  313
              +RSRWD+TPA A  G  G  P               TPVG  G+ATP       M P 
Sbjct  1    SKRRSRWDETPANAGSGPGGATPGETPG--------RQTPVGAMGMATPTPGALGPMTPE  52

Query  314  QVGVPMIPTSFGTDISGRNAPLSDEELDMMLPSEGYKILEPPPGYAPIRTPARKLMATPA  373
            Q    M    +  +I  RN PL+DEELD MLP EGYKIL+PP GY PIRTPARKL+ATP 
Sbjct  53   Q----MQAFRWEKEIDERNRPLTDEELDAMLPGEGYKILDPPAGYVPIRTPARKLLATPT  108

Query  374  P  374
            P
Sbjct  109  P  109



Lambda      K        H        a         alpha
   0.318    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1604277462


Query= TCONS_00012667

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00012666

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00012668

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00012669

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.145    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00012670

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:314761 pfam11937, DUF3455, Protein of unknown function (DUF34...  150     1e-46


>CDD:314761 pfam11937, DUF3455, Protein of unknown function (DUF3455).  This 
family of proteins are functionally uncharacterized. This 
protein is found in bacteria and eukaryotes. Proteins in this 
family are typically between 174 to 251 amino acids in length.
Length=142

 Score = 150 bits (381),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 69/193 (36%), Positives = 93/193 (48%), Gaps = 58/193 (30%)

Query  66   PSRGLKLKYVALGRGTQNYTCSSSDK-SASPVAIGAVATLFDASCLASHNPSILHELPSA  124
            P+ G KL  VALGRGTQNY C +    +A  VA+GAVATLFDA+C+A             
Sbjct  1    PA-GNKLALVALGRGTQNYECRTDAAGAAEWVAVGAVATLFDATCIAGKL----------  49

Query  125  MRTVSTDALGLFAMLLSQMTSRTSSGLILGEHYFTGTGAPMFDLRIGGHKDWLQAKKGSS  184
                                        +G H+FTGT  P +DL  G     +  K  +S
Sbjct  50   ----------------------------VGHHFFTGT--PTWDLDDG---SKVTGKVVAS  76

Query  185  VPAPSQSSSHSKEGDHSVPWLKL------GFADGLGIREVYRIHTSGGQPPASCKGQKES  238
            + AP+ ++        +VPWL L      G     G+  V R++T+GGQ PA+C+G  + 
Sbjct  77   LAAPADAAG-------AVPWLLLSAIPSTGSGVLSGVTYVQRVNTAGGQAPATCEGAGQV  129

Query  239  IEVEYAAEYWFYG  251
              V YAA+YWFYG
Sbjct  130  FTVPYAADYWFYG  142



Lambda      K        H        a         alpha
   0.317    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00018439

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460620 pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This...  477     6e-171


>CDD:460620 pfam02615, Ldh_2, Malate/L-lactate dehydrogenase.  This family 
consists of bacterial and archaeal Malate/L-lactate dehydrogenase. 
L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the 
reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, 
EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: 
(S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate 
+ NADP(+) <=> oxaloacetate + NADPH respectively.
Length=330

 Score = 477 bits (1230),  Expect = 6e-171, Method: Composition-based stats.
 Identities = 167/330 (51%), Positives = 215/330 (65%), Gaps = 2/330 (1%)

Query  13   ENARTFVQSVLTGNGVSPENATIIADCLVRADLRGVDTHGINRIPSYMERIRQGVLDAKA  72
            E  R FV+ VL   GV  E+A I+AD LV ADLRGVD+HG+NR+P Y++RIR G ++  A
Sbjct  1    EELRAFVERVLLAAGVPEEDAEIVADVLVEADLRGVDSHGVNRLPRYVDRIRAGRINPNA  60

Query  73   NPVLNQVTPVVAQVDGQNGFGFIAAHLGMKRAIEMAREFGIGFVSVKHSNHFGMSAWVVQ  132
             P + + TP VA VDG NG G +AAH  M+ AIE A+E GIG V+V++SNHFG + +  +
Sbjct  61   EPEVVRETPAVAVVDGDNGLGQVAAHKAMELAIEKAKEHGIGAVAVRNSNHFGAAGYYAE  120

Query  133  QALDAGMMSLVFTNSSPALPVWGGREKLMGVSPLACGAPAGKEKPFILDMAPSIAARGKI  192
             A +AG++ + FTNSSP +  WGG+E  +G +P+A  APAG   PF+LDMA S+ ARGKI
Sbjct  121  MAAEAGLIGIAFTNSSPLVAPWGGKEPRLGTNPIAFAAPAGGGPPFVLDMATSVVARGKI  180

Query  193  YKAARRGEKIPSDWALDGEGRPTDDPHKALE-GVMLPMGGPKGSALAVMMDVFSGVLSGS  251
              AAR+G+ IP  WALD +G PT DP  ALE G +LP+GG KG  LA+M+++ +GVLSG+
Sbjct  181  EVAARKGKPIPEGWALDADGNPTTDPAAALEGGALLPLGGHKGYGLALMVELLAGVLSGA  240

Query  252  AFAGHVTNPYDPST-PADVGHFLVAIKPDLFMGLEEFKERMDYLYQRVVGSEKMAGVDRI  310
            AF   V+  YDP   P  VGHF +AI P  F   EEFK RMD L   +  S    G D +
Sbjct  241  AFGPEVSGDYDPGGPPRKVGHFFIAIDPAAFGDAEEFKARMDALIDELRASPPAPGGDPV  300

Query  311  YFPGEIEQITHEERLKTGIPYVQAEIDALN  340
            Y PGE E     ERL+ GIP   A    L 
Sbjct  301  YLPGEREAAARAERLREGIPLDDAVWAELK  330



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00012672

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465813 pfam18592, Tho1_MOS11_C, Tho1/MOS11 C-terminal domain....  56.7    1e-11


>CDD:465813 pfam18592, Tho1_MOS11_C, Tho1/MOS11 C-terminal domain.  THO is 
a multi-protein complex involved in the formation of messenger 
ribonuclear particles (mRNPs) by coupling transcription 
with mRNA processing and export. Some studies show that Tho1, 
like Sub2, can assemble onto the nascent mRNA during transcription 
and that Tho1 and Sub2 can provide alternative pathways 
for mRNP biogenesis in the absence of a functional THO 
complex. This is the C-terminal domain found in Tho1 and MOS11 
proteins. The C-terminal region of Tho1 from Saccharomyces 
cerevisiae, adopts a helical fold similar to that of the 
WHEP RNA-binding domains of metazoan aminoacyl-tRNA synthetases.
Length=37

 Score = 56.7 bits (138),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 27/41 (66%), Positives = 31/41 (76%), Gaps = 4/41 (10%)

Query  168  TEMEEELKKRKARAEKFGITEESKAAIAEAEKQLERAKRFG  208
            T   EEL+KRKARA+KFGI  E    I EAEKQLERA++FG
Sbjct  1    TAAIEELEKRKARAKKFGIEAE----IDEAEKQLERAEKFG  37



Lambda      K        H        a         alpha
   0.304    0.123    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00012673

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465813 pfam18592, Tho1_MOS11_C, Tho1/MOS11 C-terminal domain....  56.7    1e-11


>CDD:465813 pfam18592, Tho1_MOS11_C, Tho1/MOS11 C-terminal domain.  THO is 
a multi-protein complex involved in the formation of messenger 
ribonuclear particles (mRNPs) by coupling transcription 
with mRNA processing and export. Some studies show that Tho1, 
like Sub2, can assemble onto the nascent mRNA during transcription 
and that Tho1 and Sub2 can provide alternative pathways 
for mRNP biogenesis in the absence of a functional THO 
complex. This is the C-terminal domain found in Tho1 and MOS11 
proteins. The C-terminal region of Tho1 from Saccharomyces 
cerevisiae, adopts a helical fold similar to that of the 
WHEP RNA-binding domains of metazoan aminoacyl-tRNA synthetases.
Length=37

 Score = 56.7 bits (138),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 27/41 (66%), Positives = 31/41 (76%), Gaps = 4/41 (10%)

Query  168  TEMEEELKKRKARAEKFGITEESKAAIAEAEKQLERAKRFG  208
            T   EEL+KRKARA+KFGI  E    I EAEKQLERA++FG
Sbjct  1    TAAIEELEKRKARAKKFGIEAE----IDEAEKQLERAEKFG  37



Lambda      K        H        a         alpha
   0.304    0.123    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00012674

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465813 pfam18592, Tho1_MOS11_C, Tho1/MOS11 C-terminal domain....  58.6    2e-12


>CDD:465813 pfam18592, Tho1_MOS11_C, Tho1/MOS11 C-terminal domain.  THO is 
a multi-protein complex involved in the formation of messenger 
ribonuclear particles (mRNPs) by coupling transcription 
with mRNA processing and export. Some studies show that Tho1, 
like Sub2, can assemble onto the nascent mRNA during transcription 
and that Tho1 and Sub2 can provide alternative pathways 
for mRNP biogenesis in the absence of a functional THO 
complex. This is the C-terminal domain found in Tho1 and MOS11 
proteins. The C-terminal region of Tho1 from Saccharomyces 
cerevisiae, adopts a helical fold similar to that of the 
WHEP RNA-binding domains of metazoan aminoacyl-tRNA synthetases.
Length=37

 Score = 58.6 bits (143),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 27/41 (66%), Positives = 31/41 (76%), Gaps = 4/41 (10%)

Query  168  TEMEEELKKRKARAEKFGITEESKAAIAEAEKQLERAKRFG  208
            T   EEL+KRKARA+KFGI  E    I EAEKQLERA++FG
Sbjct  1    TAAIEELEKRKARAKKFGIEAE----IDEAEKQLERAEKFG  37



Lambda      K        H        a         alpha
   0.304    0.123    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00012675

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465813 pfam18592, Tho1_MOS11_C, Tho1/MOS11 C-terminal domain....  56.7    1e-11


>CDD:465813 pfam18592, Tho1_MOS11_C, Tho1/MOS11 C-terminal domain.  THO is 
a multi-protein complex involved in the formation of messenger 
ribonuclear particles (mRNPs) by coupling transcription 
with mRNA processing and export. Some studies show that Tho1, 
like Sub2, can assemble onto the nascent mRNA during transcription 
and that Tho1 and Sub2 can provide alternative pathways 
for mRNP biogenesis in the absence of a functional THO 
complex. This is the C-terminal domain found in Tho1 and MOS11 
proteins. The C-terminal region of Tho1 from Saccharomyces 
cerevisiae, adopts a helical fold similar to that of the 
WHEP RNA-binding domains of metazoan aminoacyl-tRNA synthetases.
Length=37

 Score = 56.7 bits (138),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 27/41 (66%), Positives = 31/41 (76%), Gaps = 4/41 (10%)

Query  168  TEMEEELKKRKARAEKFGITEESKAAIAEAEKQLERAKRFG  208
            T   EEL+KRKARA+KFGI  E    I EAEKQLERA++FG
Sbjct  1    TAAIEELEKRKARAKKFGIEAE----IDEAEKQLERAEKFG  37



Lambda      K        H        a         alpha
   0.304    0.123    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00018440

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00012676

Length=1542


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1958096166


Query= TCONS_00012677

Length=1519


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1926886040


Query= TCONS_00018442

Length=1542


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1958096166


Query= TCONS_00018441

Length=1542


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1958096166


Query= TCONS_00012678

Length=1519


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 1926886040


Query= TCONS_00012679

Length=1542


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1958096166


Query= TCONS_00012680

Length=367


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.123    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00012681

Length=1492


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1890248066


Query= TCONS_00012683

Length=707
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427265 pfam03370, CBM_21, Carbohydrate/starch-binding module ...  185     3e-56


>CDD:427265 pfam03370, CBM_21, Carbohydrate/starch-binding module (family 
21).  This family consists of several eukaryotic proteins that 
are thought to be involved in the regulation of glycogen 
metabolism. For instance, the mouse PTG protein has been shown 
to interact with glycogen synthase, phosphorylase kinase, 
phosphorylase a: these three enzymes have key roles in the 
regulation of glycogen metabolism. PTG also binds the catalytic 
subunit of protein phosphatase 1 (PP1C) and localizes it 
to glycogen. Subsets of similar interactions have been observed 
with several other members of this family, such as the 
yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise 
function of these proteins is not known, they may serve a scaffold 
function, bringing together the key enzymes in glycogen 
metabolism. This family is a carbohydrate binding domain.
Length=112

 Score = 185 bits (472),  Expect = 3e-56, Method: Composition-based stats.
 Identities = 64/108 (59%), Positives = 74/108 (69%), Gaps = 0/108 (0%)

Query  313  QKVRLERLFLSSDKDTLVGVVAVANLAFQKHIAARFTFDYWRTVSEVTAEYSDDVRRKQA  372
            Q V LERLFLS DK +LVG V V NLAF+K +A R+TFD W+T+S+V AEY  D R    
Sbjct  5    QPVCLERLFLSDDKKSLVGTVRVKNLAFEKRVAVRYTFDNWKTISDVPAEYVPDARSSLD  64

Query  373  NDGYDRFTFSIKLTDHANLEQKTMFVCVRYSVAGQEFWDNNNFMNYQV  420
             D YDRF F I L    NLE KT+  C+RY V GQE+WDNNN  NYQV
Sbjct  65   GDNYDRFKFKIPLPPLLNLEGKTLEFCIRYEVNGQEYWDNNNGKNYQV  112



Lambda      K        H        a         alpha
   0.309    0.124    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905521060


Query= TCONS_00012682

Length=707
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427265 pfam03370, CBM_21, Carbohydrate/starch-binding module ...  185     3e-56


>CDD:427265 pfam03370, CBM_21, Carbohydrate/starch-binding module (family 
21).  This family consists of several eukaryotic proteins that 
are thought to be involved in the regulation of glycogen 
metabolism. For instance, the mouse PTG protein has been shown 
to interact with glycogen synthase, phosphorylase kinase, 
phosphorylase a: these three enzymes have key roles in the 
regulation of glycogen metabolism. PTG also binds the catalytic 
subunit of protein phosphatase 1 (PP1C) and localizes it 
to glycogen. Subsets of similar interactions have been observed 
with several other members of this family, such as the 
yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise 
function of these proteins is not known, they may serve a scaffold 
function, bringing together the key enzymes in glycogen 
metabolism. This family is a carbohydrate binding domain.
Length=112

 Score = 185 bits (472),  Expect = 3e-56, Method: Composition-based stats.
 Identities = 64/108 (59%), Positives = 74/108 (69%), Gaps = 0/108 (0%)

Query  313  QKVRLERLFLSSDKDTLVGVVAVANLAFQKHIAARFTFDYWRTVSEVTAEYSDDVRRKQA  372
            Q V LERLFLS DK +LVG V V NLAF+K +A R+TFD W+T+S+V AEY  D R    
Sbjct  5    QPVCLERLFLSDDKKSLVGTVRVKNLAFEKRVAVRYTFDNWKTISDVPAEYVPDARSSLD  64

Query  373  NDGYDRFTFSIKLTDHANLEQKTMFVCVRYSVAGQEFWDNNNFMNYQV  420
             D YDRF F I L    NLE KT+  C+RY V GQE+WDNNN  NYQV
Sbjct  65   GDNYDRFKFKIPLPPLLNLEGKTLEFCIRYEVNGQEYWDNNNGKNYQV  112



Lambda      K        H        a         alpha
   0.309    0.124    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905521060


Query= TCONS_00018445

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00012684

Length=707
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427265 pfam03370, CBM_21, Carbohydrate/starch-binding module ...  185     3e-56


>CDD:427265 pfam03370, CBM_21, Carbohydrate/starch-binding module (family 
21).  This family consists of several eukaryotic proteins that 
are thought to be involved in the regulation of glycogen 
metabolism. For instance, the mouse PTG protein has been shown 
to interact with glycogen synthase, phosphorylase kinase, 
phosphorylase a: these three enzymes have key roles in the 
regulation of glycogen metabolism. PTG also binds the catalytic 
subunit of protein phosphatase 1 (PP1C) and localizes it 
to glycogen. Subsets of similar interactions have been observed 
with several other members of this family, such as the 
yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise 
function of these proteins is not known, they may serve a scaffold 
function, bringing together the key enzymes in glycogen 
metabolism. This family is a carbohydrate binding domain.
Length=112

 Score = 185 bits (472),  Expect = 3e-56, Method: Composition-based stats.
 Identities = 64/108 (59%), Positives = 74/108 (69%), Gaps = 0/108 (0%)

Query  313  QKVRLERLFLSSDKDTLVGVVAVANLAFQKHIAARFTFDYWRTVSEVTAEYSDDVRRKQA  372
            Q V LERLFLS DK +LVG V V NLAF+K +A R+TFD W+T+S+V AEY  D R    
Sbjct  5    QPVCLERLFLSDDKKSLVGTVRVKNLAFEKRVAVRYTFDNWKTISDVPAEYVPDARSSLD  64

Query  373  NDGYDRFTFSIKLTDHANLEQKTMFVCVRYSVAGQEFWDNNNFMNYQV  420
             D YDRF F I L    NLE KT+  C+RY V GQE+WDNNN  NYQV
Sbjct  65   GDNYDRFKFKIPLPPLLNLEGKTLEFCIRYEVNGQEYWDNNNGKNYQV  112



Lambda      K        H        a         alpha
   0.309    0.124    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905521060


Query= TCONS_00018446

Length=284


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00012685

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00012686

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.136    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00012687

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395139 pfam00191, Annexin, Annexin. This family of annexins a...  76.7    1e-18


>CDD:395139 pfam00191, Annexin, Annexin.  This family of annexins also includes 
giardin that has been shown to function as an annexin.
Length=66

 Score = 76.7 bits (190),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 0/66 (0%)

Query  18  READLLRKAMKGFGTDEKMLIQVLSKLDPLQMAAVRSTYTNHHHRDLYKDVKSETSSYFR  77
            +A+LLRKAMKG GTDE  LI++L+     Q+ A+R  Y   + +DL KD+KSETS  F 
Sbjct  1   YDAELLRKAMKGLGTDESTLIEILATRSNAQLQAIREAYKKLYGKDLEKDIKSETSGDFE  60

Query  78  QGLLAI  83
           + LLA+
Sbjct  61  KLLLAL  66


 Score = 69.4 bits (171),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 27/72 (38%), Positives = 40/72 (56%), Gaps = 10/72 (14%)

Query  250  RDADLLEDCMKGMGTKDEK----LVTRVVRLHWNRQHLDQVKRAYHHRYKRDLIARVRGE  305
             DA+LL   MKG+GT +      L TR      +   L  ++ AY   Y +DL   ++ E
Sbjct  1    YDAELLRKAMKGLGTDESTLIEILATR------SNAQLQAIREAYKKLYGKDLEKDIKSE  54

Query  306  TSGDYQKLMVAL  317
            TSGD++KL++AL
Sbjct  55   TSGDFEKLLLAL  66


 Score = 60.2 bits (147),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 40/56 (71%), Gaps = 0/56 (0%)

Query  90   HDVQSLREAVQGLGTKEWLLNDVVLGRSNADLNAIKAAYEHTFHRSLQKDVEADLS  145
            +D + LR+A++GLGT E  L +++  RSNA L AI+ AY+  + + L+KD++++ S
Sbjct  1    YDAELLRKAMKGLGTDESTLIEILATRSNAQLQAIREAYKKLYGKDLEKDIKSETS  56



Lambda      K        H        a         alpha
   0.320    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00018447

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00012688

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00012689

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00012690

Length=482


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 591999806


Query= TCONS_00018448

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395139 pfam00191, Annexin, Annexin. This family of annexins a...  76.7    1e-18


>CDD:395139 pfam00191, Annexin, Annexin.  This family of annexins also includes 
giardin that has been shown to function as an annexin.
Length=66

 Score = 76.7 bits (190),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 0/66 (0%)

Query  18  READLLRKAMKGFGTDEKMLIQVLSKLDPLQMAAVRSTYTNHHHRDLYKDVKSETSSYFR  77
            +A+LLRKAMKG GTDE  LI++L+     Q+ A+R  Y   + +DL KD+KSETS  F 
Sbjct  1   YDAELLRKAMKGLGTDESTLIEILATRSNAQLQAIREAYKKLYGKDLEKDIKSETSGDFE  60

Query  78  QGLLAI  83
           + LLA+
Sbjct  61  KLLLAL  66


 Score = 69.4 bits (171),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 27/72 (38%), Positives = 40/72 (56%), Gaps = 10/72 (14%)

Query  250  RDADLLEDCMKGMGTKDEK----LVTRVVRLHWNRQHLDQVKRAYHHRYKRDLIARVRGE  305
             DA+LL   MKG+GT +      L TR      +   L  ++ AY   Y +DL   ++ E
Sbjct  1    YDAELLRKAMKGLGTDESTLIEILATR------SNAQLQAIREAYKKLYGKDLEKDIKSE  54

Query  306  TSGDYQKLMVAL  317
            TSGD++KL++AL
Sbjct  55   TSGDFEKLLLAL  66


 Score = 60.2 bits (147),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 40/56 (71%), Gaps = 0/56 (0%)

Query  90   HDVQSLREAVQGLGTKEWLLNDVVLGRSNADLNAIKAAYEHTFHRSLQKDVEADLS  145
            +D + LR+A++GLGT E  L +++  RSNA L AI+ AY+  + + L+KD++++ S
Sbjct  1    YDAELLRKAMKGLGTDESTLIEILATRSNAQLQAIREAYKKLYGKDLEKDIKSETS  56



Lambda      K        H        a         alpha
   0.320    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00012691

Length=482


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 591999806


Query= TCONS_00012692

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00012693

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461600 pfam05241, EBP, Emopamil binding protein. Emopamil bin...  82.6    7e-21


>CDD:461600 pfam05241, EBP, Emopamil binding protein.  Emopamil binding protein 
(EBP) is as a gene that encodes a non-glycosylated type 
I integral membrane protein of endoplasmic reticulum and 
shows high level expression in epithelial tissues. The EBP protein 
has emopamil binding domains, including the sterol acceptor 
site and the catalytic centre, which show Delta8-Delta7 
sterol isomerase activity. Human sterol isomerase, a homolog 
of mouse EBP, is suggested not only to play a role in cholesterol 
biosynthesis, but also to affect lipoprotein internalisation. 
In humans, mutations of EBP are known to cause the 
genetic disorder of X-linked dominant chondrodysplasia punctata 
(CDPX2). This syndrome of humans is lethal in most males, 
and affected females display asymmetric hyperkeratotic 
skin and skeletal abnormalities.
Length=112

 Score = 82.6 bits (205),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 52/125 (42%), Gaps = 13/125 (10%)

Query  102  PSARLWQEYAKADRRWAVADAPTISIELLTVFFGGPAAAYVCYLLWKASSSRSTASAKGA  161
              A+LW+EY        VA  P +S ELL  FF GP      Y L K+            
Sbjct  1    FLAQLWKEYLADTSDPFVAGPPFVSFELLEAFFQGPLFFLAAYALLKSPWRLL-------  53

Query  162  AKARLWLVAPALATAELYGGFMTFAPEWLTGSPQLDTSNPVYLWFYLFFFNTLWVWIPLW  221
                 + +  A  T + YG  + FA EWL G   L        W YL F N  W+ IPL 
Sbjct  54   --LLRYALQTATTTLQCYGDVLYFATEWLEGGLSLSRP----FWVYLVFLNLPWLVIPLL  107

Query  222  VLWEA  226
            +L ++
Sbjct  108  LLVDS  112



Lambda      K        H        a         alpha
   0.324    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00012694

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461600 pfam05241, EBP, Emopamil binding protein. Emopamil bin...  82.6    7e-21


>CDD:461600 pfam05241, EBP, Emopamil binding protein.  Emopamil binding protein 
(EBP) is as a gene that encodes a non-glycosylated type 
I integral membrane protein of endoplasmic reticulum and 
shows high level expression in epithelial tissues. The EBP protein 
has emopamil binding domains, including the sterol acceptor 
site and the catalytic centre, which show Delta8-Delta7 
sterol isomerase activity. Human sterol isomerase, a homolog 
of mouse EBP, is suggested not only to play a role in cholesterol 
biosynthesis, but also to affect lipoprotein internalisation. 
In humans, mutations of EBP are known to cause the 
genetic disorder of X-linked dominant chondrodysplasia punctata 
(CDPX2). This syndrome of humans is lethal in most males, 
and affected females display asymmetric hyperkeratotic 
skin and skeletal abnormalities.
Length=112

 Score = 82.6 bits (205),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 52/125 (42%), Gaps = 13/125 (10%)

Query  102  PSARLWQEYAKADRRWAVADAPTISIELLTVFFGGPAAAYVCYLLWKASSSRSTASAKGA  161
              A+LW+EY        VA  P +S ELL  FF GP      Y L K+            
Sbjct  1    FLAQLWKEYLADTSDPFVAGPPFVSFELLEAFFQGPLFFLAAYALLKSPWRLL-------  53

Query  162  AKARLWLVAPALATAELYGGFMTFAPEWLTGSPQLDTSNPVYLWFYLFFFNTLWVWIPLW  221
                 + +  A  T + YG  + FA EWL G   L        W YL F N  W+ IPL 
Sbjct  54   --LLRYALQTATTTLQCYGDVLYFATEWLEGGLSLSRP----FWVYLVFLNLPWLVIPLL  107

Query  222  VLWEA  226
            +L ++
Sbjct  108  LLVDS  112



Lambda      K        H        a         alpha
   0.324    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00018449

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.125    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0665    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00012696

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.125    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00012697

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00012698

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00012699

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00018450

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00012700

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00018451

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00012701

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.140    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00018452

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00018453

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.140    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00012702

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.140    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00018454

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00012704

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00012703

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00018455

Length=384


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00012705

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  57.2    4e-11


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 57.2 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 19/36 (53%), Positives = 23/36 (64%), Gaps = 0/36 (0%)

Query  58   ISRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAG  93
              RG+D  +V  V+N+DLP    SY  RIGR GRAG
Sbjct  74   AERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.314    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00018456

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00018457

Length=339


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00018458

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  57.2    4e-11


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 57.2 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 19/36 (53%), Positives = 23/36 (64%), Gaps = 0/36 (0%)

Query  58   ISRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAG  93
              RG+D  +V  V+N+DLP    SY  RIGR GRAG
Sbjct  74   AERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.314    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00012706

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  57.2    4e-11


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 57.2 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 19/36 (53%), Positives = 23/36 (64%), Gaps = 0/36 (0%)

Query  58   ISRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAG  93
              RG+D  +V  V+N+DLP    SY  RIGR GRAG
Sbjct  74   AERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.314    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00012707

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  57.2    4e-11


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 57.2 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 19/36 (53%), Positives = 23/36 (64%), Gaps = 0/36 (0%)

Query  58   ISRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAG  93
              RG+D  +V  V+N+DLP    SY  RIGR GRAG
Sbjct  74   AERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.314    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00018459

Length=307


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00012708

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  57.2    4e-11


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 57.2 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 19/36 (53%), Positives = 23/36 (64%), Gaps = 0/36 (0%)

Query  58   ISRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAG  93
              RG+D  +V  V+N+DLP    SY  RIGR GRAG
Sbjct  74   AERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.314    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00012709

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00012710

Length=518


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00012711

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00018460

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00012712

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. Thi...  180     2e-48
CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Doma...  124     2e-34


>CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain 
is found at the N-terminus of SMC proteins. The SMC (structural 
maintenance of chromosomes) superfamily proteins have 
ATP-binding domains at the N- and C-termini, and two extended 
coiled-coil domains separated by a hinge in the middle. The 
eukaryotic SMC proteins form two kind of heterodimers: the 
SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute 
an essential part of higher order complexes, which are 
involved in chromatin and DNA dynamics. This family also includes 
the RecF and RecN proteins that are involved in DNA 
metabolism and recombination.
Length=1161

 Score = 180 bits (459),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 100/604 (17%), Positives = 191/604 (32%), Gaps = 35/604 (6%)

Query  1     MMDHNTSRGIAAVRRIKRQHNLEGVYGTLAELFEVNDRYRTAVEVTAGQSLFHYVVDTDE  60
             + D    R I+A  R+         Y        + +   TA EV   Q L   + +   
Sbjct  516   IKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPL  575

Query  61    TATKVLEILQQEKAGRVTFMPLNRLRSKPANLPRASDTIPMIDKLQYDSAFEKAFNHVFG  120
              A K+  ++ + K    +   L                                      
Sbjct  576   GARKLRLLIPKLKLPLKSIAVLEIDP----------------------------------  601

Query  121   KTIICPNLQVASQYARSHGVNAITPEGDRSDKRGALTGGFHDSRQSRLDAVKNLTKWRDE  180
               +    L  A+  A      A   EG   D           +++S L    +L +   E
Sbjct  602   -ILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAE  660

Query  181   YENKKNRGAEIRKELEKLDQVITKSVGELQKLEQQRHQVQHSSGPLRQELRSKRDLLQKK  240
                 K   +E+ KEL ++ ++  K+  EL K E  R Q++      R++   K+  L+ +
Sbjct  661   KSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAE  720

Query  241   NDSLDAKRKALRNIETNLAALSDQVNAFEAELNTPFQKALSNEEEAQLESLSVVAQNLRQ  300
                 D  ++A   I   L  L  +++  E E      K    EEE    SL        +
Sbjct  721   ELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEER  780

Query  301   QYQELSAQRSELEARKSILEVELRENLNPRLDQLVSRDTDMGDDDGQGNLKETEREMKRL  360
             +  E      E E +    E ELR       ++    + +    + +  +KE E E   L
Sbjct  781   EKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELAL  840

Query  361   RKSLENLSQRLQNVDESIEKANAQANELEKQKAEIRLELEELARSIEKHQRRMEKNMQKK  420
                 E   ++L   +    +      EL ++      ELEE     E   +  ++  +KK
Sbjct  841   ELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKK  900

Query  421   AALTKQAAECAANIRDLGVLPDEAFTKYKHTDSNTVVKKLHKVNEALKKYSHVNKKAFEQ  480
                 +         ++  +                  ++L       K+    NK+  E+
Sbjct  901   ELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEE  960

Query  481   YNSFTKQRETLTSRREELEASQKSIEELISVLDQRKDEAIERTFKQVSREFANIFEKLVP  540
              N      +    +   +   +   +E     D+ + E +E   K++ R       + + 
Sbjct  961   RNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLK  1020

Query  541   AGRGRLIIQRKTDRALRQEDDMDSDDERAQQSVENYVGVGISVSFNSKHDEQQRIQQLSG  600
                   +   K    +    ++    E   +  ++    GI +S        + +  LSG
Sbjct  1021  EFLELFVSINKGWNKVFFYLELGGSAELRLEDPDDPFSGGIEISARPPGKGVKNLDLLSG  1080

Query  601   GQKS  604
             G+K+
Sbjct  1081  GEKT  1084


>CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Domain.  This 
family represents the hinge region of the SMC (Structural 
Maintenance of Chromosomes) family of proteins. The hinge region 
is responsible for formation of the DNA interacting dimer. 
It is also possible that the precise structure of it is 
an essential determinant of the specificity of the DNA-protein 
interaction.
Length=116

 Score = 124 bits (314),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 67/116 (58%), Gaps = 2/116 (2%)

Query  22   LEGVYGTLAELFEVNDRYRTAVEVTAGQSLFHYVVDTDETATKVLEILQQEKAGRVTFMP  81
            L+GV G LA+L EV++ Y  AVE   G  L   VVD ++ A + +E L++ K GR TF+P
Sbjct  1    LKGVLGRLADLIEVDEGYEKAVEAALGGRLQAVVVDDEDDAKRAIEFLKKNKLGRATFLP  60

Query  82   LNRLRSKPANLP--RASDTIPMIDKLQYDSAFEKAFNHVFGKTIICPNLQVASQYA  135
            L+RL+ +P            P++D ++YD  + KA  ++ G T++  +L  A + A
Sbjct  61   LDRLKPRPRRPGADLKGGAGPLLDLVEYDDEYRKALRYLLGNTLVVDDLDEALELA  116



Lambda      K        H        a         alpha
   0.312    0.127    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 783080272


Query= TCONS_00012713

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00012714

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. Thi...  180     2e-48
CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Doma...  124     2e-34


>CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain 
is found at the N-terminus of SMC proteins. The SMC (structural 
maintenance of chromosomes) superfamily proteins have 
ATP-binding domains at the N- and C-termini, and two extended 
coiled-coil domains separated by a hinge in the middle. The 
eukaryotic SMC proteins form two kind of heterodimers: the 
SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute 
an essential part of higher order complexes, which are 
involved in chromatin and DNA dynamics. This family also includes 
the RecF and RecN proteins that are involved in DNA 
metabolism and recombination.
Length=1161

 Score = 180 bits (459),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 100/604 (17%), Positives = 191/604 (32%), Gaps = 35/604 (6%)

Query  1     MMDHNTSRGIAAVRRIKRQHNLEGVYGTLAELFEVNDRYRTAVEVTAGQSLFHYVVDTDE  60
             + D    R I+A  R+         Y        + +   TA EV   Q L   + +   
Sbjct  516   IKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPL  575

Query  61    TATKVLEILQQEKAGRVTFMPLNRLRSKPANLPRASDTIPMIDKLQYDSAFEKAFNHVFG  120
              A K+  ++ + K    +   L                                      
Sbjct  576   GARKLRLLIPKLKLPLKSIAVLEIDP----------------------------------  601

Query  121   KTIICPNLQVASQYARSHGVNAITPEGDRSDKRGALTGGFHDSRQSRLDAVKNLTKWRDE  180
               +    L  A+  A      A   EG   D           +++S L    +L +   E
Sbjct  602   -ILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAE  660

Query  181   YENKKNRGAEIRKELEKLDQVITKSVGELQKLEQQRHQVQHSSGPLRQELRSKRDLLQKK  240
                 K   +E+ KEL ++ ++  K+  EL K E  R Q++      R++   K+  L+ +
Sbjct  661   KSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAE  720

Query  241   NDSLDAKRKALRNIETNLAALSDQVNAFEAELNTPFQKALSNEEEAQLESLSVVAQNLRQ  300
                 D  ++A   I   L  L  +++  E E      K    EEE    SL        +
Sbjct  721   ELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEER  780

Query  301   QYQELSAQRSELEARKSILEVELRENLNPRLDQLVSRDTDMGDDDGQGNLKETEREMKRL  360
             +  E      E E +    E ELR       ++    + +    + +  +KE E E   L
Sbjct  781   EKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELAL  840

Query  361   RKSLENLSQRLQNVDESIEKANAQANELEKQKAEIRLELEELARSIEKHQRRMEKNMQKK  420
                 E   ++L   +    +      EL ++      ELEE     E   +  ++  +KK
Sbjct  841   ELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKK  900

Query  421   AALTKQAAECAANIRDLGVLPDEAFTKYKHTDSNTVVKKLHKVNEALKKYSHVNKKAFEQ  480
                 +         ++  +                  ++L       K+    NK+  E+
Sbjct  901   ELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEE  960

Query  481   YNSFTKQRETLTSRREELEASQKSIEELISVLDQRKDEAIERTFKQVSREFANIFEKLVP  540
              N      +    +   +   +   +E     D+ + E +E   K++ R       + + 
Sbjct  961   RNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLK  1020

Query  541   AGRGRLIIQRKTDRALRQEDDMDSDDERAQQSVENYVGVGISVSFNSKHDEQQRIQQLSG  600
                   +   K    +    ++    E   +  ++    GI +S        + +  LSG
Sbjct  1021  EFLELFVSINKGWNKVFFYLELGGSAELRLEDPDDPFSGGIEISARPPGKGVKNLDLLSG  1080

Query  601   GQKS  604
             G+K+
Sbjct  1081  GEKT  1084


>CDD:461926 pfam06470, SMC_hinge, SMC proteins Flexible Hinge Domain.  This 
family represents the hinge region of the SMC (Structural 
Maintenance of Chromosomes) family of proteins. The hinge region 
is responsible for formation of the DNA interacting dimer. 
It is also possible that the precise structure of it is 
an essential determinant of the specificity of the DNA-protein 
interaction.
Length=116

 Score = 124 bits (314),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 67/116 (58%), Gaps = 2/116 (2%)

Query  22   LEGVYGTLAELFEVNDRYRTAVEVTAGQSLFHYVVDTDETATKVLEILQQEKAGRVTFMP  81
            L+GV G LA+L EV++ Y  AVE   G  L   VVD ++ A + +E L++ K GR TF+P
Sbjct  1    LKGVLGRLADLIEVDEGYEKAVEAALGGRLQAVVVDDEDDAKRAIEFLKKNKLGRATFLP  60

Query  82   LNRLRSKPANLP--RASDTIPMIDKLQYDSAFEKAFNHVFGKTIICPNLQVASQYA  135
            L+RL+ +P            P++D ++YD  + KA  ++ G T++  +L  A + A
Sbjct  61   LDRLKPRPRRPGADLKGGAGPLLDLVEYDDEYRKALRYLLGNTLVVDDLDEALELA  116



Lambda      K        H        a         alpha
   0.312    0.127    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 783080272


Query= TCONS_00012715

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432417 pfam12239, DUF3605, Protein of unknown function (DUF36...  253     3e-87


>CDD:432417 pfam12239, DUF3605, Protein of unknown function (DUF3605).  This 
family of proteins is found in eukaryotes and viruses. Proteins 
in this family are typically between 161 and 256 amino 
acids in length.
Length=155

 Score = 253 bits (650),  Expect = 3e-87, Method: Composition-based stats.
 Identities = 98/194 (51%), Positives = 116/194 (60%), Gaps = 39/194 (20%)

Query  31   DWDNLKDIIGMRSRPYLFAFSPHTARNDLGALKRKPSDLVRYLSWSRDTKAQYGSITNFI  90
             W+ +K+II               A N L  LKR PSDL RYL W  + KA+YGSI N+I
Sbjct  1    TWEEVKEII---------------ATNRLELLKRSPSDLRRYLKWKAELKAKYGSIMNYI  45

Query  91   CKRRLGWHLPEPAGTDDSSGTAVADSEPVFPYNNPIPFADPSDYKILRNDWPYGLAPGIA  150
               RL W  P                   F     +PFADPSDYKILRNDWPYG  PGI 
Sbjct  46   LLERLHWGPP-------------------FTPRGELPFADPSDYKILRNDWPYGFEPGIV  86

Query  151  HLCVWLRTPVPVQEHGGDLTDESRRLIEEFVRRTFVERLAREGYNNPKDHVLWFKNWTAL  210
            HL VW + P+PV    GDLT E+R LIE+FV+RTFV+RL       P+D VLWFKNWT+L
Sbjct  87   HLVVWSKFPLPVDPETGDLTPEARALIEDFVKRTFVDRLGI-----PRDRVLWFKNWTSL  141

Query  211  QSVRSLEHIHVLIR  224
            QSVR++EHIHVL+R
Sbjct  142  QSVRAVEHIHVLLR  155



Lambda      K        H        a         alpha
   0.320    0.138    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00018461

Length=696
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463757 pfam12937, F-box-like, F-box-like. This is an F-box-li...  71.4    2e-16


>CDD:463757 pfam12937, F-box-like, F-box-like.  This is an F-box-like family.
Length=45

 Score = 71.4 bits (176),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 0/45 (0%)

Query  196  LTALPPEISFKILCYLDTTSLCKAAQVSRRWRALADDDVVWHRMC  240
            L++LP EI  +I  YLD   L + A V RRWR LA DD +W R+C
Sbjct  1    LSSLPDEILLQIFSYLDPKDLLRLALVCRRWRELASDDSLWRRLC  45



Lambda      K        H        a         alpha
   0.318    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 889298370


Query= TCONS_00012716

Length=551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427715 pfam04108, APG17, Autophagy protein Apg17. Apg17 is re...  307     6e-101


>CDD:427715 pfam04108, APG17, Autophagy protein Apg17.  Apg17 is required 
for activating Apg1 protein kinases.
Length=360

 Score = 307 bits (788),  Expect = 6e-101, Method: Composition-based stats.
 Identities = 162/426 (38%), Positives = 219/426 (51%), Gaps = 67/426 (16%)

Query  43   SLSSINHVWR-ANEIVTAARAALEECVVVSARTAFLRRGLNNQLRLLYSVRTEVEEISLR  101
            SLSS   + R ANE++T AR+ LEE VV+ A+ AFLRRGL+ QL  L  VR  +E++   
Sbjct  1    SLSSAQDLCRWANELLTDARSLLEELVVLLAKIAFLRRGLSVQLANLEKVREGLEKVLNE  60

Query  102  GRSEFAAVLKDLDDADTRLRRTLELLRETIVHPAFRPEGEDPKSLHDFVDERGVEELHAA  161
             + +F  +LKDLD A  RL  TL+ LR T V PA  P  E  K+L DF+DE  VE L  A
Sbjct  61   LKKDFKQLLKDLDAALERLEETLDKLRNTPVEPALPPGEEKQKTLLDFIDEDSVEILRDA  120

Query  162  LKSSIDRTTAAQAQLDSSNHAFDDELLSIKEALGTYRTAAKLASSRSSSSASSSSTSNSS  221
            LK  ID   AAQ  LDS    FDD+L  +++ L +                      +S 
Sbjct  121  LKELIDELQAAQESLDSDLKRFDDDLRDLQKELES---------------------LSSP  159

Query  222  LPSISTMPSMLHSLEMHAQEMANLLESLVRHFDLCVTAVKHTEGGGAAAKSITGDMPVGV  281
              SIS +P++L  LE   +EMA+LLESL  H+D CVTAVK TEGG               
Sbjct  160  SESISLIPTLLKELESLEEEMASLLESLTNHYDQCVTAVKLTEGG---------------  204

Query  282  PVSGRMGSNIEEEINNNLNAPLDPLSNSEYQEMVNVLFKDAAEAEDVVMEIQDRIGEMES  341
                                           EM+ VL  DA E +DVV E+QDR+ EME+
Sbjct  205  -----------------------------RAEMLEVLENDARELDDVVPELQDRLDEMEN  235

Query  342  VLENVLAQRDALRSIYNATTDIYQHLSSLGSTRLPGYIAQAHNFTQVWHEENDRISGGLA  401
              E +    +   S+ +      Q ++ + S RLP Y+A    F + W EE + I   L+
Sbjct  236  NYERLQKLLEQKNSLIDELLSALQLIAEIQS-RLPEYLAALKEFEERWEEEKETIEDYLS  294

Query  402  DLSDLNSLYNGFLDAYDGLIVEVARRKHVRQRVEKVLRDTRHKLDQLYEEDVTARETFRV  461
            +L DL   Y GF  AY  L++EV RR+   ++++K+LR    +LD+L EE+   RE F  
Sbjct  295  ELEDLREFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRREKFLK  354

Query  462  EKGDYL  467
            E GD+L
Sbjct  355  EVGDFL  360



Lambda      K        H        a         alpha
   0.313    0.128    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685942452


Query= TCONS_00012717

Length=696
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463757 pfam12937, F-box-like, F-box-like. This is an F-box-li...  71.4    2e-16


>CDD:463757 pfam12937, F-box-like, F-box-like.  This is an F-box-like family.
Length=45

 Score = 71.4 bits (176),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 0/45 (0%)

Query  196  LTALPPEISFKILCYLDTTSLCKAAQVSRRWRALADDDVVWHRMC  240
            L++LP EI  +I  YLD   L + A V RRWR LA DD +W R+C
Sbjct  1    LSSLPDEILLQIFSYLDPKDLLRLALVCRRWRELASDDSLWRRLC  45



Lambda      K        H        a         alpha
   0.318    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 889298370


Query= TCONS_00018462

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00012718

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463757 pfam12937, F-box-like, F-box-like. This is an F-box-li...  70.2    4e-16


>CDD:463757 pfam12937, F-box-like, F-box-like.  This is an F-box-like family.
Length=45

 Score = 70.2 bits (173),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 0/45 (0%)

Query  25  LTALPPEISFKILCYLDTTSLCKAAQVSRRWRALADDDVVWHRMC  69
           L++LP EI  +I  YLD   L + A V RRWR LA DD +W R+C
Sbjct  1   LSSLPDEILLQIFSYLDPKDLLRLALVCRRWRELASDDSLWRRLC  45



Lambda      K        H        a         alpha
   0.320    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00012719

Length=1573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      165     2e-45
CDD:399383 pfam06337, DUSP, DUSP domain. The DUSP (domain present...  72.8    4e-16


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 165 bits (419),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 74/198 (37%), Positives = 100/198 (51%), Gaps = 35/198 (18%)

Query  676  TGLSNLGNTCYMNSALQCVRSVEELTYYFLNDVYKKDLNPSNPLAHNGDIAKAYANLLRM  735
            TGL NLGNTCYMNS LQ + S+     Y L      + +  N    + ++  A  +L + 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNK---DINLLCALRDLFKA  57

Query  736  LYDEAGQSSFAPRQFKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIQKKPYIEK  795
            L   +  SS +P+ FK ++G+  P FSGY QQD+QEFLLFLLDGL EDLN          
Sbjct  58   LQKNSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG---------  108

Query  796  PDSTDDMVHDKVALKEFASKCWDIYKARNDSVITDLFAGMYKSTLVCPVCEKVSIIFDPF  855
                    H                   N+S+ITDLF G  KS L C  C +VS  F+PF
Sbjct  109  -------NHST----------------ENESLITDLFRGQLKSRLKCLSCGEVSETFEPF  145

Query  856  NNLTLQLPIENLWSKEIF  873
            ++L+L +P ++   K   
Sbjct  146  SDLSLPIPGDSAELKTAS  163


 Score = 150 bits (381),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 6/151 (4%)

Query  1308  VTLYECLDEFNKEEILSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSASRGFR  1367
              +L  C  +F+K E L + + +YC +C   + A K+ ++ + P +L++HLKRFS +R   
Sbjct  162   ASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW  221

Query  1368  DKLDVLVDFPVEGLDMS---GRVESPEEGKSLIYDLFAVDNHYGGLGGGHYTAYAKNFMS  1424
             +KL+  V+FP+E LD+S        P+      Y L AV  H G L  GHY AY K + +
Sbjct  222   EKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYEN  280

Query  1425  GQWNEYNDSSVSRPIDPQSVV-TPAAYLLFY  1454
              +W +++D  V+  +D ++ V + +AY+LFY
Sbjct  281   NRWYKFDDEKVTE-VDEETAVLSSSAYILFY  310


>CDD:399383 pfam06337, DUSP, DUSP domain.  The DUSP (domain present in ubiquitin-specific 
protease) domain is found at the N-terminus 
of Ubiquitin-specific proteases. The structure of this domain 
has been solved. Its tripod-like structure consists of a 
3-fold alpha-helical bundle supporting a triple-stranded anti-parallel 
beta-sheet.
Length=80

 Score = 72.8 bits (179),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 34/104 (33%), Positives = 47/104 (45%), Gaps = 25/104 (24%)

Query  342  QKGYLVSMSWLKRVLSRSSTHADKADKSAAEGEIGPVDNSDLVLVTDPAITGFHDEAGEP  401
             K YL+S  WL +  S    +  + +      E GP+DNSDL+               E 
Sbjct  2    DKVYLISSKWLNKWKS----YVKEPNN-----EPGPIDNSDLL-------------DDES  39

Query  402  FVPLRPGLQMGEDFEIVPQEGWDLIMRWYGLASQSPAIVRYAHN  445
               L+P LQ G D+ IVP+E W+ ++ WYG     P I R   N
Sbjct  40   NGQLKPNLQEGVDYVIVPEEVWEFLVEWYG---GGPEIKRNVVN  80



Lambda      K        H        a         alpha
   0.312    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2000161988


Query= TCONS_00012722

Length=1486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      165     2e-45
CDD:399383 pfam06337, DUSP, DUSP domain. The DUSP (domain present...  72.8    4e-16


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 165 bits (419),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 74/198 (37%), Positives = 100/198 (51%), Gaps = 35/198 (18%)

Query  468  TGLSNLGNTCYMNSALQCVRSVEELTYYFLNDVYKKDLNPSNPLAHNGDIAKAYANLLRM  527
            TGL NLGNTCYMNS LQ + S+     Y L      + +  N    + ++  A  +L + 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNK---DINLLCALRDLFKA  57

Query  528  LYDEAGQSSFAPRQFKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIQKKPYIEK  587
            L   +  SS +P+ FK ++G+  P FSGY QQD+QEFLLFLLDGL EDLN          
Sbjct  58   LQKNSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG---------  108

Query  588  PDSTDDMVHDKVALKEFASKCWDIYKARNDSVITDLFAGMYKSTLVCPVCEKVSIIFDPF  647
                    H                   N+S+ITDLF G  KS L C  C +VS  F+PF
Sbjct  109  -------NHST----------------ENESLITDLFRGQLKSRLKCLSCGEVSETFEPF  145

Query  648  NNLTLQLPIENLWSKEIF  665
            ++L+L +P ++   K   
Sbjct  146  SDLSLPIPGDSAELKTAS  163


 Score = 150 bits (381),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 6/151 (4%)

Query  1100  VTLYECLDEFNKEEILSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSASRGFR  1159
              +L  C  +F+K E L + + +YC +C   + A K+ ++ + P +L++HLKRFS +R   
Sbjct  162   ASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW  221

Query  1160  DKLDVLVDFPVEGLDMS---GRVESPEEGKSLIYDLFAVDNHYGGLGGGHYTAYAKNFMS  1216
             +KL+  V+FP+E LD+S        P+      Y L AV  H G L  GHY AY K + +
Sbjct  222   EKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYEN  280

Query  1217  GQWNEYNDSSVSRPIDPQSVV-TPAAYLLFY  1246
              +W +++D  V+  +D ++ V + +AY+LFY
Sbjct  281   NRWYKFDDEKVTE-VDEETAVLSSSAYILFY  310


>CDD:399383 pfam06337, DUSP, DUSP domain.  The DUSP (domain present in ubiquitin-specific 
protease) domain is found at the N-terminus 
of Ubiquitin-specific proteases. The structure of this domain 
has been solved. Its tripod-like structure consists of a 
3-fold alpha-helical bundle supporting a triple-stranded anti-parallel 
beta-sheet.
Length=80

 Score = 72.8 bits (179),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 34/104 (33%), Positives = 47/104 (45%), Gaps = 25/104 (24%)

Query  134  QKGYLVSMSWLKRVLSRSSTHADKADKSAAEGEIGPVDNSDLVLVTDPAITGFHDEAGEP  193
             K YL+S  WL +  S    +  + +      E GP+DNSDL+               E 
Sbjct  2    DKVYLISSKWLNKWKS----YVKEPNN-----EPGPIDNSDLL-------------DDES  39

Query  194  FVPLRPGLQMGEDFEIVPQEGWDLIMRWYGLASQSPAIVRYAHN  237
               L+P LQ G D+ IVP+E W+ ++ WYG     P I R   N
Sbjct  40   NGQLKPNLQEGVDYVIVPEEVWEFLVEWYG---GGPEIKRNVVN  80



Lambda      K        H        a         alpha
   0.312    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0665    0.140     1.90     42.6     43.6 

Effective search space used: 1882106294


Query= TCONS_00012720

Length=1365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      165     1e-45
CDD:399383 pfam06337, DUSP, DUSP domain. The DUSP (domain present...  72.8    3e-16


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 165 bits (419),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 74/198 (37%), Positives = 100/198 (51%), Gaps = 35/198 (18%)

Query  468  TGLSNLGNTCYMNSALQCVRSVEELTYYFLNDVYKKDLNPSNPLAHNGDIAKAYANLLRM  527
            TGL NLGNTCYMNS LQ + S+     Y L      + +  N    + ++  A  +L + 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNK---DINLLCALRDLFKA  57

Query  528  LYDEAGQSSFAPRQFKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIQKKPYIEK  587
            L   +  SS +P+ FK ++G+  P FSGY QQD+QEFLLFLLDGL EDLN          
Sbjct  58   LQKNSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG---------  108

Query  588  PDSTDDMVHDKVALKEFASKCWDIYKARNDSVITDLFAGMYKSTLVCPVCEKVSIIFDPF  647
                    H                   N+S+ITDLF G  KS L C  C +VS  F+PF
Sbjct  109  -------NHST----------------ENESLITDLFRGQLKSRLKCLSCGEVSETFEPF  145

Query  648  NNLTLQLPIENLWSKEIF  665
            ++L+L +P ++   K   
Sbjct  146  SDLSLPIPGDSAELKTAS  163


 Score = 150 bits (381),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 6/151 (4%)

Query  1100  VTLYECLDEFNKEEILSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSASRGFR  1159
              +L  C  +F+K E L + + +YC +C   + A K+ ++ + P +L++HLKRFS +R   
Sbjct  162   ASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW  221

Query  1160  DKLDVLVDFPVEGLDMS---GRVESPEEGKSLIYDLFAVDNHYGGLGGGHYTAYAKNFMS  1216
             +KL+  V+FP+E LD+S        P+      Y L AV  H G L  GHY AY K + +
Sbjct  222   EKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYEN  280

Query  1217  GQWNEYNDSSVSRPIDPQSVV-TPAAYLLFY  1246
              +W +++D  V+  +D ++ V + +AY+LFY
Sbjct  281   NRWYKFDDEKVTE-VDEETAVLSSSAYILFY  310


>CDD:399383 pfam06337, DUSP, DUSP domain.  The DUSP (domain present in ubiquitin-specific 
protease) domain is found at the N-terminus 
of Ubiquitin-specific proteases. The structure of this domain 
has been solved. Its tripod-like structure consists of a 
3-fold alpha-helical bundle supporting a triple-stranded anti-parallel 
beta-sheet.
Length=80

 Score = 72.8 bits (179),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 34/104 (33%), Positives = 47/104 (45%), Gaps = 25/104 (24%)

Query  134  QKGYLVSMSWLKRVLSRSSTHADKADKSAAEGEIGPVDNSDLVLVTDPAITGFHDEAGEP  193
             K YL+S  WL +  S    +  + +      E GP+DNSDL+               E 
Sbjct  2    DKVYLISSKWLNKWKS----YVKEPNN-----EPGPIDNSDLL-------------DDES  39

Query  194  FVPLRPGLQMGEDFEIVPQEGWDLIMRWYGLASQSPAIVRYAHN  237
               L+P LQ G D+ IVP+E W+ ++ WYG     P I R   N
Sbjct  40   NGQLKPNLQEGVDYVIVPEEVWEFLVEWYG---GGPEIKRNVVN  80



Lambda      K        H        a         alpha
   0.312    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1744152200


Query= TCONS_00012721

Length=1694
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      165     2e-45
CDD:399383 pfam06337, DUSP, DUSP domain. The DUSP (domain present...  72.8    4e-16


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 165 bits (419),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 74/198 (37%), Positives = 100/198 (51%), Gaps = 35/198 (18%)

Query  676  TGLSNLGNTCYMNSALQCVRSVEELTYYFLNDVYKKDLNPSNPLAHNGDIAKAYANLLRM  735
            TGL NLGNTCYMNS LQ + S+     Y L      + +  N    + ++  A  +L + 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNK---DINLLCALRDLFKA  57

Query  736  LYDEAGQSSFAPRQFKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIQKKPYIEK  795
            L   +  SS +P+ FK ++G+  P FSGY QQD+QEFLLFLLDGL EDLN          
Sbjct  58   LQKNSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG---------  108

Query  796  PDSTDDMVHDKVALKEFASKCWDIYKARNDSVITDLFAGMYKSTLVCPVCEKVSIIFDPF  855
                    H                   N+S+ITDLF G  KS L C  C +VS  F+PF
Sbjct  109  -------NHST----------------ENESLITDLFRGQLKSRLKCLSCGEVSETFEPF  145

Query  856  NNLTLQLPIENLWSKEIF  873
            ++L+L +P ++   K   
Sbjct  146  SDLSLPIPGDSAELKTAS  163


 Score = 150 bits (381),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 6/151 (4%)

Query  1308  VTLYECLDEFNKEEILSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSASRGFR  1367
              +L  C  +F+K E L + + +YC +C   + A K+ ++ + P +L++HLKRFS +R   
Sbjct  162   ASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW  221

Query  1368  DKLDVLVDFPVEGLDMS---GRVESPEEGKSLIYDLFAVDNHYGGLGGGHYTAYAKNFMS  1424
             +KL+  V+FP+E LD+S        P+      Y L AV  H G L  GHY AY K + +
Sbjct  222   EKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYEN  280

Query  1425  GQWNEYNDSSVSRPIDPQSVV-TPAAYLLFY  1454
              +W +++D  V+  +D ++ V + +AY+LFY
Sbjct  281   NRWYKFDDEKVTE-VDEETAVLSSSAYILFY  310


>CDD:399383 pfam06337, DUSP, DUSP domain.  The DUSP (domain present in ubiquitin-specific 
protease) domain is found at the N-terminus 
of Ubiquitin-specific proteases. The structure of this domain 
has been solved. Its tripod-like structure consists of a 
3-fold alpha-helical bundle supporting a triple-stranded anti-parallel 
beta-sheet.
Length=80

 Score = 72.8 bits (179),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 34/104 (33%), Positives = 47/104 (45%), Gaps = 25/104 (24%)

Query  342  QKGYLVSMSWLKRVLSRSSTHADKADKSAAEGEIGPVDNSDLVLVTDPAITGFHDEAGEP  401
             K YL+S  WL +  S    +  + +      E GP+DNSDL+               E 
Sbjct  2    DKVYLISSKWLNKWKS----YVKEPNN-----EPGPIDNSDLL-------------DDES  39

Query  402  FVPLRPGLQMGEDFEIVPQEGWDLIMRWYGLASQSPAIVRYAHN  445
               L+P LQ G D+ IVP+E W+ ++ WYG     P I R   N
Sbjct  40   NGQLKPNLQEGVDYVIVPEEVWEFLVEWYG---GGPEIKRNVVN  80



Lambda      K        H        a         alpha
   0.312    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2131694456


Query= TCONS_00012724

Length=1464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      165     1e-45
CDD:399383 pfam06337, DUSP, DUSP domain. The DUSP (domain present...  72.8    4e-16


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 165 bits (419),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 74/198 (37%), Positives = 100/198 (51%), Gaps = 35/198 (18%)

Query  468  TGLSNLGNTCYMNSALQCVRSVEELTYYFLNDVYKKDLNPSNPLAHNGDIAKAYANLLRM  527
            TGL NLGNTCYMNS LQ + S+     Y L      + +  N    + ++  A  +L + 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNK---DINLLCALRDLFKA  57

Query  528  LYDEAGQSSFAPRQFKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIQKKPYIEK  587
            L   +  SS +P+ FK ++G+  P FSGY QQD+QEFLLFLLDGL EDLN          
Sbjct  58   LQKNSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG---------  108

Query  588  PDSTDDMVHDKVALKEFASKCWDIYKARNDSVITDLFAGMYKSTLVCPVCEKVSIIFDPF  647
                    H                   N+S+ITDLF G  KS L C  C +VS  F+PF
Sbjct  109  -------NHST----------------ENESLITDLFRGQLKSRLKCLSCGEVSETFEPF  145

Query  648  NNLTLQLPIENLWSKEIF  665
            ++L+L +P ++   K   
Sbjct  146  SDLSLPIPGDSAELKTAS  163


 Score = 150 bits (381),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 6/151 (4%)

Query  1078  VTLYECLDEFNKEEILSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSASRGFR  1137
              +L  C  +F+K E L + + +YC +C   + A K+ ++ + P +L++HLKRFS +R   
Sbjct  162   ASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW  221

Query  1138  DKLDVLVDFPVEGLDMS---GRVESPEEGKSLIYDLFAVDNHYGGLGGGHYTAYAKNFMS  1194
             +KL+  V+FP+E LD+S        P+      Y L AV  H G L  GHY AY K + +
Sbjct  222   EKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYEN  280

Query  1195  GQWNEYNDSSVSRPIDPQSVV-TPAAYLLFY  1224
              +W +++D  V+  +D ++ V + +AY+LFY
Sbjct  281   NRWYKFDDEKVTE-VDEETAVLSSSAYILFY  310


>CDD:399383 pfam06337, DUSP, DUSP domain.  The DUSP (domain present in ubiquitin-specific 
protease) domain is found at the N-terminus 
of Ubiquitin-specific proteases. The structure of this domain 
has been solved. Its tripod-like structure consists of a 
3-fold alpha-helical bundle supporting a triple-stranded anti-parallel 
beta-sheet.
Length=80

 Score = 72.8 bits (179),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 34/104 (33%), Positives = 47/104 (45%), Gaps = 25/104 (24%)

Query  134  QKGYLVSMSWLKRVLSRSSTHADKADKSAAEGEIGPVDNSDLVLVTDPAITGFHDEAGEP  193
             K YL+S  WL +  S    +  + +      E GP+DNSDL+               E 
Sbjct  2    DKVYLISSKWLNKWKS----YVKEPNN-----EPGPIDNSDLL-------------DDES  39

Query  194  FVPLRPGLQMGEDFEIVPQEGWDLIMRWYGLASQSPAIVRYAHN  237
               L+P LQ G D+ IVP+E W+ ++ WYG     P I R   N
Sbjct  40   NGQLKPNLQEGVDYVIVPEEVWEFLVEWYG---GGPEIKRNVVN  80



Lambda      K        H        a         alpha
   0.312    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1852253130


Query= TCONS_00012723

Length=1343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      165     1e-45
CDD:399383 pfam06337, DUSP, DUSP domain. The DUSP (domain present...  72.8    3e-16


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 165 bits (419),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 74/198 (37%), Positives = 100/198 (51%), Gaps = 35/198 (18%)

Query  468  TGLSNLGNTCYMNSALQCVRSVEELTYYFLNDVYKKDLNPSNPLAHNGDIAKAYANLLRM  527
            TGL NLGNTCYMNS LQ + S+     Y L      + +  N    + ++  A  +L + 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNK---DINLLCALRDLFKA  57

Query  528  LYDEAGQSSFAPRQFKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIQKKPYIEK  587
            L   +  SS +P+ FK ++G+  P FSGY QQD+QEFLLFLLDGL EDLN          
Sbjct  58   LQKNSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG---------  108

Query  588  PDSTDDMVHDKVALKEFASKCWDIYKARNDSVITDLFAGMYKSTLVCPVCEKVSIIFDPF  647
                    H                   N+S+ITDLF G  KS L C  C +VS  F+PF
Sbjct  109  -------NHST----------------ENESLITDLFRGQLKSRLKCLSCGEVSETFEPF  145

Query  648  NNLTLQLPIENLWSKEIF  665
            ++L+L +P ++   K   
Sbjct  146  SDLSLPIPGDSAELKTAS  163


 Score = 150 bits (381),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 6/151 (4%)

Query  1078  VTLYECLDEFNKEEILSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSASRGFR  1137
              +L  C  +F+K E L + + +YC +C   + A K+ ++ + P +L++HLKRFS +R   
Sbjct  162   ASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW  221

Query  1138  DKLDVLVDFPVEGLDMS---GRVESPEEGKSLIYDLFAVDNHYGGLGGGHYTAYAKNFMS  1194
             +KL+  V+FP+E LD+S        P+      Y L AV  H G L  GHY AY K + +
Sbjct  222   EKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYEN  280

Query  1195  GQWNEYNDSSVSRPIDPQSVV-TPAAYLLFY  1224
              +W +++D  V+  +D ++ V + +AY+LFY
Sbjct  281   NRWYKFDDEKVTE-VDEETAVLSSSAYILFY  310


>CDD:399383 pfam06337, DUSP, DUSP domain.  The DUSP (domain present in ubiquitin-specific 
protease) domain is found at the N-terminus 
of Ubiquitin-specific proteases. The structure of this domain 
has been solved. Its tripod-like structure consists of a 
3-fold alpha-helical bundle supporting a triple-stranded anti-parallel 
beta-sheet.
Length=80

 Score = 72.8 bits (179),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 34/104 (33%), Positives = 47/104 (45%), Gaps = 25/104 (24%)

Query  134  QKGYLVSMSWLKRVLSRSSTHADKADKSAAEGEIGPVDNSDLVLVTDPAITGFHDEAGEP  193
             K YL+S  WL +  S    +  + +      E GP+DNSDL+               E 
Sbjct  2    DKVYLISSKWLNKWKS----YVKEPNN-----EPGPIDNSDLL-------------DDES  39

Query  194  FVPLRPGLQMGEDFEIVPQEGWDLIMRWYGLASQSPAIVRYAHN  237
               L+P LQ G D+ IVP+E W+ ++ WYG     P I R   N
Sbjct  40   NGQLKPNLQEGVDYVIVPEEVWEFLVEWYG---GGPEIKRNVVN  80



Lambda      K        H        a         alpha
   0.312    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1713867000


Query= TCONS_00012725

Length=1464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      165     1e-45
CDD:399383 pfam06337, DUSP, DUSP domain. The DUSP (domain present...  72.8    4e-16


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 165 bits (419),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 74/198 (37%), Positives = 100/198 (51%), Gaps = 35/198 (18%)

Query  468  TGLSNLGNTCYMNSALQCVRSVEELTYYFLNDVYKKDLNPSNPLAHNGDIAKAYANLLRM  527
            TGL NLGNTCYMNS LQ + S+     Y L      + +  N    + ++  A  +L + 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNK---DINLLCALRDLFKA  57

Query  528  LYDEAGQSSFAPRQFKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIQKKPYIEK  587
            L   +  SS +P+ FK ++G+  P FSGY QQD+QEFLLFLLDGL EDLN          
Sbjct  58   LQKNSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG---------  108

Query  588  PDSTDDMVHDKVALKEFASKCWDIYKARNDSVITDLFAGMYKSTLVCPVCEKVSIIFDPF  647
                    H                   N+S+ITDLF G  KS L C  C +VS  F+PF
Sbjct  109  -------NHST----------------ENESLITDLFRGQLKSRLKCLSCGEVSETFEPF  145

Query  648  NNLTLQLPIENLWSKEIF  665
            ++L+L +P ++   K   
Sbjct  146  SDLSLPIPGDSAELKTAS  163


 Score = 150 bits (381),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 6/151 (4%)

Query  1078  VTLYECLDEFNKEEILSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSASRGFR  1137
              +L  C  +F+K E L + + +YC +C   + A K+ ++ + P +L++HLKRFS +R   
Sbjct  162   ASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW  221

Query  1138  DKLDVLVDFPVEGLDMS---GRVESPEEGKSLIYDLFAVDNHYGGLGGGHYTAYAKNFMS  1194
             +KL+  V+FP+E LD+S        P+      Y L AV  H G L  GHY AY K + +
Sbjct  222   EKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYEN  280

Query  1195  GQWNEYNDSSVSRPIDPQSVV-TPAAYLLFY  1224
              +W +++D  V+  +D ++ V + +AY+LFY
Sbjct  281   NRWYKFDDEKVTE-VDEETAVLSSSAYILFY  310


>CDD:399383 pfam06337, DUSP, DUSP domain.  The DUSP (domain present in ubiquitin-specific 
protease) domain is found at the N-terminus 
of Ubiquitin-specific proteases. The structure of this domain 
has been solved. Its tripod-like structure consists of a 
3-fold alpha-helical bundle supporting a triple-stranded anti-parallel 
beta-sheet.
Length=80

 Score = 72.8 bits (179),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 34/104 (33%), Positives = 47/104 (45%), Gaps = 25/104 (24%)

Query  134  QKGYLVSMSWLKRVLSRSSTHADKADKSAAEGEIGPVDNSDLVLVTDPAITGFHDEAGEP  193
             K YL+S  WL +  S    +  + +      E GP+DNSDL+               E 
Sbjct  2    DKVYLISSKWLNKWKS----YVKEPNN-----EPGPIDNSDLL-------------DDES  39

Query  194  FVPLRPGLQMGEDFEIVPQEGWDLIMRWYGLASQSPAIVRYAHN  237
               L+P LQ G D+ IVP+E W+ ++ WYG     P I R   N
Sbjct  40   NGQLKPNLQEGVDYVIVPEEVWEFLVEWYG---GGPEIKRNVVN  80



Lambda      K        H        a         alpha
   0.312    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1852253130


Query= TCONS_00012726

Length=1551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      165     2e-45
CDD:399383 pfam06337, DUSP, DUSP domain. The DUSP (domain present...  72.8    4e-16


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 165 bits (419),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 74/198 (37%), Positives = 100/198 (51%), Gaps = 35/198 (18%)

Query  676  TGLSNLGNTCYMNSALQCVRSVEELTYYFLNDVYKKDLNPSNPLAHNGDIAKAYANLLRM  735
            TGL NLGNTCYMNS LQ + S+     Y L      + +  N    + ++  A  +L + 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNK---DINLLCALRDLFKA  57

Query  736  LYDEAGQSSFAPRQFKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIQKKPYIEK  795
            L   +  SS +P+ FK ++G+  P FSGY QQD+QEFLLFLLDGL EDLN          
Sbjct  58   LQKNSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG---------  108

Query  796  PDSTDDMVHDKVALKEFASKCWDIYKARNDSVITDLFAGMYKSTLVCPVCEKVSIIFDPF  855
                    H                   N+S+ITDLF G  KS L C  C +VS  F+PF
Sbjct  109  -------NHST----------------ENESLITDLFRGQLKSRLKCLSCGEVSETFEPF  145

Query  856  NNLTLQLPIENLWSKEIF  873
            ++L+L +P ++   K   
Sbjct  146  SDLSLPIPGDSAELKTAS  163


 Score = 150 bits (381),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 6/151 (4%)

Query  1286  VTLYECLDEFNKEEILSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSASRGFR  1345
              +L  C  +F+K E L + + +YC +C   + A K+ ++ + P +L++HLKRFS +R   
Sbjct  162   ASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW  221

Query  1346  DKLDVLVDFPVEGLDMS---GRVESPEEGKSLIYDLFAVDNHYGGLGGGHYTAYAKNFMS  1402
             +KL+  V+FP+E LD+S        P+      Y L AV  H G L  GHY AY K + +
Sbjct  222   EKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYEN  280

Query  1403  GQWNEYNDSSVSRPIDPQSVV-TPAAYLLFY  1432
              +W +++D  V+  +D ++ V + +AY+LFY
Sbjct  281   NRWYKFDDEKVTE-VDEETAVLSSSAYILFY  310


>CDD:399383 pfam06337, DUSP, DUSP domain.  The DUSP (domain present in ubiquitin-specific 
protease) domain is found at the N-terminus 
of Ubiquitin-specific proteases. The structure of this domain 
has been solved. Its tripod-like structure consists of a 
3-fold alpha-helical bundle supporting a triple-stranded anti-parallel 
beta-sheet.
Length=80

 Score = 72.8 bits (179),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 34/104 (33%), Positives = 47/104 (45%), Gaps = 25/104 (24%)

Query  342  QKGYLVSMSWLKRVLSRSSTHADKADKSAAEGEIGPVDNSDLVLVTDPAITGFHDEAGEP  401
             K YL+S  WL +  S    +  + +      E GP+DNSDL+               E 
Sbjct  2    DKVYLISSKWLNKWKS----YVKEPNN-----EPGPIDNSDLL-------------DDES  39

Query  402  FVPLRPGLQMGEDFEIVPQEGWDLIMRWYGLASQSPAIVRYAHN  445
               L+P LQ G D+ IVP+E W+ ++ WYG     P I R   N
Sbjct  40   NGQLKPNLQEGVDYVIVPEEVWEFLVEWYG---GGPEIKRNVVN  80



Lambda      K        H        a         alpha
   0.312    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1970308824


Query= TCONS_00018464

Length=1694
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      165     2e-45
CDD:399383 pfam06337, DUSP, DUSP domain. The DUSP (domain present...  72.8    4e-16


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 165 bits (419),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 74/198 (37%), Positives = 100/198 (51%), Gaps = 35/198 (18%)

Query  676  TGLSNLGNTCYMNSALQCVRSVEELTYYFLNDVYKKDLNPSNPLAHNGDIAKAYANLLRM  735
            TGL NLGNTCYMNS LQ + S+     Y L      + +  N    + ++  A  +L + 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNK---DINLLCALRDLFKA  57

Query  736  LYDEAGQSSFAPRQFKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIQKKPYIEK  795
            L   +  SS +P+ FK ++G+  P FSGY QQD+QEFLLFLLDGL EDLN          
Sbjct  58   LQKNSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG---------  108

Query  796  PDSTDDMVHDKVALKEFASKCWDIYKARNDSVITDLFAGMYKSTLVCPVCEKVSIIFDPF  855
                    H                   N+S+ITDLF G  KS L C  C +VS  F+PF
Sbjct  109  -------NHST----------------ENESLITDLFRGQLKSRLKCLSCGEVSETFEPF  145

Query  856  NNLTLQLPIENLWSKEIF  873
            ++L+L +P ++   K   
Sbjct  146  SDLSLPIPGDSAELKTAS  163


 Score = 150 bits (381),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 6/151 (4%)

Query  1308  VTLYECLDEFNKEEILSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSASRGFR  1367
              +L  C  +F+K E L + + +YC +C   + A K+ ++ + P +L++HLKRFS +R   
Sbjct  162   ASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW  221

Query  1368  DKLDVLVDFPVEGLDMS---GRVESPEEGKSLIYDLFAVDNHYGGLGGGHYTAYAKNFMS  1424
             +KL+  V+FP+E LD+S        P+      Y L AV  H G L  GHY AY K + +
Sbjct  222   EKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYEN  280

Query  1425  GQWNEYNDSSVSRPIDPQSVV-TPAAYLLFY  1454
              +W +++D  V+  +D ++ V + +AY+LFY
Sbjct  281   NRWYKFDDEKVTE-VDEETAVLSSSAYILFY  310


>CDD:399383 pfam06337, DUSP, DUSP domain.  The DUSP (domain present in ubiquitin-specific 
protease) domain is found at the N-terminus 
of Ubiquitin-specific proteases. The structure of this domain 
has been solved. Its tripod-like structure consists of a 
3-fold alpha-helical bundle supporting a triple-stranded anti-parallel 
beta-sheet.
Length=80

 Score = 72.8 bits (179),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 34/104 (33%), Positives = 47/104 (45%), Gaps = 25/104 (24%)

Query  342  QKGYLVSMSWLKRVLSRSSTHADKADKSAAEGEIGPVDNSDLVLVTDPAITGFHDEAGEP  401
             K YL+S  WL +  S    +  + +      E GP+DNSDL+               E 
Sbjct  2    DKVYLISSKWLNKWKS----YVKEPNN-----EPGPIDNSDLL-------------DDES  39

Query  402  FVPLRPGLQMGEDFEIVPQEGWDLIMRWYGLASQSPAIVRYAHN  445
               L+P LQ G D+ IVP+E W+ ++ WYG     P I R   N
Sbjct  40   NGQLKPNLQEGVDYVIVPEEVWEFLVEWYG---GGPEIKRNVVN  80



Lambda      K        H        a         alpha
   0.312    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0941    0.140     1.90     42.6     43.6 

Effective search space used: 2131694456


Query= TCONS_00018463

Length=1486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      165     2e-45
CDD:399383 pfam06337, DUSP, DUSP domain. The DUSP (domain present...  72.8    4e-16


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 165 bits (419),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 74/198 (37%), Positives = 100/198 (51%), Gaps = 35/198 (18%)

Query  468  TGLSNLGNTCYMNSALQCVRSVEELTYYFLNDVYKKDLNPSNPLAHNGDIAKAYANLLRM  527
            TGL NLGNTCYMNS LQ + S+     Y L      + +  N    + ++  A  +L + 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNK---DINLLCALRDLFKA  57

Query  528  LYDEAGQSSFAPRQFKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIQKKPYIEK  587
            L   +  SS +P+ FK ++G+  P FSGY QQD+QEFLLFLLDGL EDLN          
Sbjct  58   LQKNSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG---------  108

Query  588  PDSTDDMVHDKVALKEFASKCWDIYKARNDSVITDLFAGMYKSTLVCPVCEKVSIIFDPF  647
                    H                   N+S+ITDLF G  KS L C  C +VS  F+PF
Sbjct  109  -------NHST----------------ENESLITDLFRGQLKSRLKCLSCGEVSETFEPF  145

Query  648  NNLTLQLPIENLWSKEIF  665
            ++L+L +P ++   K   
Sbjct  146  SDLSLPIPGDSAELKTAS  163


 Score = 150 bits (381),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 6/151 (4%)

Query  1100  VTLYECLDEFNKEEILSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSASRGFR  1159
              +L  C  +F+K E L + + +YC +C   + A K+ ++ + P +L++HLKRFS +R   
Sbjct  162   ASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW  221

Query  1160  DKLDVLVDFPVEGLDMS---GRVESPEEGKSLIYDLFAVDNHYGGLGGGHYTAYAKNFMS  1216
             +KL+  V+FP+E LD+S        P+      Y L AV  H G L  GHY AY K + +
Sbjct  222   EKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYEN  280

Query  1217  GQWNEYNDSSVSRPIDPQSVV-TPAAYLLFY  1246
              +W +++D  V+  +D ++ V + +AY+LFY
Sbjct  281   NRWYKFDDEKVTE-VDEETAVLSSSAYILFY  310


>CDD:399383 pfam06337, DUSP, DUSP domain.  The DUSP (domain present in ubiquitin-specific 
protease) domain is found at the N-terminus 
of Ubiquitin-specific proteases. The structure of this domain 
has been solved. Its tripod-like structure consists of a 
3-fold alpha-helical bundle supporting a triple-stranded anti-parallel 
beta-sheet.
Length=80

 Score = 72.8 bits (179),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 34/104 (33%), Positives = 47/104 (45%), Gaps = 25/104 (24%)

Query  134  QKGYLVSMSWLKRVLSRSSTHADKADKSAAEGEIGPVDNSDLVLVTDPAITGFHDEAGEP  193
             K YL+S  WL +  S    +  + +      E GP+DNSDL+               E 
Sbjct  2    DKVYLISSKWLNKWKS----YVKEPNN-----EPGPIDNSDLL-------------DDES  39

Query  194  FVPLRPGLQMGEDFEIVPQEGWDLIMRWYGLASQSPAIVRYAHN  237
               L+P LQ G D+ IVP+E W+ ++ WYG     P I R   N
Sbjct  40   NGQLKPNLQEGVDYVIVPEEVWEFLVEWYG---GGPEIKRNVVN  80



Lambda      K        H        a         alpha
   0.312    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1882106294


Query= TCONS_00018465

Length=702
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      123     1e-31


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 123 bits (311),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 44/127 (35%), Positives = 72/127 (57%), Gaps = 4/127 (3%)

Query  574  VTLYECLDEFNKEEILSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSASRGFR  633
             +L  C  +F+K E L + + +YC +C   + A K+ ++ + P +L++HLKRFS +R   
Sbjct  162  ASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW  221

Query  634  DKLDVLVDFPVEGLDMS---GRVESPEEGKSLIYDLFAVDNHYGGLGGGHYTAYAKNFMS  690
            +KL+  V+FP+E LD+S        P+      Y L AV  H G L  GHY AY K + +
Sbjct  222  EKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYEN  280

Query  691  GQWNEYN  697
             +W +++
Sbjct  281  NRWYKFD  287


 Score = 105 bits (264),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 70/138 (51%), Gaps = 32/138 (23%)

Query  2    LYDEAGQSSFAPRQFKHTIGRYGPAFSGYGQQDSQEFLLFLLDGLQEDLNRIQKKPYIEK  61
            L   +  SS +P+ FK ++G+  P FSGY QQD+QEFLLFLLDGL EDLN          
Sbjct  58   LQKNSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNG---------  108

Query  62   PDSTDDMVHDKVALKEFASKCWDIYKARNDSVITDLFAGMYKSTLVCPVCEKVSIIFDPF  121
                    H                   N+S+ITDLF G  KS L C  C +VS  F+PF
Sbjct  109  -------NHST----------------ENESLITDLFRGQLKSRLKCLSCGEVSETFEPF  145

Query  122  NNLTLQLPIENLWSKEIF  139
            ++L+L +P ++   K   
Sbjct  146  SDLSLPIPGDSAELKTAS  163



Lambda      K        H        a         alpha
   0.315    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 898147110


Query= TCONS_00018466

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      150     2e-42


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 150 bits (381),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 6/151 (4%)

Query  190  VTLYECLDEFNKEEILSENDAWYCPRCKEHRRASKKFELWKTPDILVMHLKRFSASRGFR  249
             +L  C  +F+K E L + + +YC +C   + A K+ ++ + P +L++HLKRFS +R   
Sbjct  162  ASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW  221

Query  250  DKLDVLVDFPVEGLDMS---GRVESPEEGKSLIYDLFAVDNHYGGLGGGHYTAYAKNFMS  306
            +KL+  V+FP+E LD+S        P+      Y L AV  H G L  GHY AY K + +
Sbjct  222  EKLNTEVEFPLE-LDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYEN  280

Query  307  GQWNEYNDSSVSRPIDPQSVV-TPAAYLLFY  336
             +W +++D  V+  +D ++ V + +AY+LFY
Sbjct  281  NRWYKFDDEKVTE-VDEETAVLSSSAYILFY  310



Lambda      K        H        a         alpha
   0.311    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00018467

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00012728

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460567 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family. The ...  122     9e-37


>CDD:460567 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family.  The pre-protein 
translocase of the mitochondrial outer membrane (Tom) 
allows the import of pre-proteins from the cytoplasm. Tom forms 
a complex with a number of proteins, including Tim17. Tim17 
and Tim23 are thought to form the translocation channel 
of the inner membrane. This family includes Tim17, Tim22 and 
Tim23. This family also includes Pmp24 a peroxisomal protein. 
The involvement of this domain in the targeting of PMP24 
remains to be proved. PMP24 was known as Pmp27 in.
Length=109

 Score = 122 bits (309),  Expect = 9e-37, Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 59/110 (54%), Gaps = 2/110 (2%)

Query  82   LCYGTGTTYLTALTIGGAWGLAEGLKRTPVTAPPKIRLNGVLNSITRRGPFLGNSAGVVA  141
              Y TG  +L    +GG +GL  G +  P     K+RL G LN++ +RGP LGN+  V  
Sbjct  1    CLYKTGGAFLMGAVLGGVFGLVYGARNRPPPLTAKLRLRGALNAVGKRGPSLGNNFAVFG  60

Query  142  MVYNGFNSGLGYARGKHDAANSIVAGALSGMLFKSTRGLKPMMISGGIVA  191
             +Y+G   GL   RGK D  NSI AGAL+G L +   G +   + G + A
Sbjct  61   GLYSGIECGLEKYRGKEDPWNSIAAGALTGALLRG--GPRAAAVGGAVGA  108



Lambda      K        H        a         alpha
   0.317    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00018468

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460567 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family. The ...  122     9e-37


>CDD:460567 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family.  The pre-protein 
translocase of the mitochondrial outer membrane (Tom) 
allows the import of pre-proteins from the cytoplasm. Tom forms 
a complex with a number of proteins, including Tim17. Tim17 
and Tim23 are thought to form the translocation channel 
of the inner membrane. This family includes Tim17, Tim22 and 
Tim23. This family also includes Pmp24 a peroxisomal protein. 
The involvement of this domain in the targeting of PMP24 
remains to be proved. PMP24 was known as Pmp27 in.
Length=109

 Score = 122 bits (309),  Expect = 9e-37, Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 59/110 (54%), Gaps = 2/110 (2%)

Query  82   LCYGTGTTYLTALTIGGAWGLAEGLKRTPVTAPPKIRLNGVLNSITRRGPFLGNSAGVVA  141
              Y TG  +L    +GG +GL  G +  P     K+RL G LN++ +RGP LGN+  V  
Sbjct  1    CLYKTGGAFLMGAVLGGVFGLVYGARNRPPPLTAKLRLRGALNAVGKRGPSLGNNFAVFG  60

Query  142  MVYNGFNSGLGYARGKHDAANSIVAGALSGMLFKSTRGLKPMMISGGIVA  191
             +Y+G   GL   RGK D  NSI AGAL+G L +   G +   + G + A
Sbjct  61   GLYSGIECGLEKYRGKEDPWNSIAAGALTGALLRG--GPRAAAVGGAVGA  108



Lambda      K        H        a         alpha
   0.317    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00012730

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00012729

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00012731

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  66.9    2e-14


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 66.9 bits (164),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 52/124 (42%), Gaps = 21/124 (17%)

Query  51   SPLLQTRCGSEDYAAPEILMGQPYDGRLTDAWALGVLLYAMMENRLPFDALPGARGDPEK  110
               L T  G+  Y APE+L G PY G   D W+LG +LY ++  + PF   PG  G+   
Sbjct  114  GSSLTTFVGTPWYMAPEVLGGNPY-GPKVDVWSLGCILYELLTGKPPF---PGINGNEIY  169

Query  111  LRARTPHRIARCEWAWYRYADSDGEWDPVKGKDLEGARECVEGLLKRN-TRRKGLDEIAA  169
                    I    +A+     +  E      KDL      ++ LLK++ ++R    +   
Sbjct  170  ------ELIIDQPYAFPELPSNLSEE----AKDL------LKKLLKKDPSKRLTATQALQ  213

Query  170  LDWV  173
              W 
Sbjct  214  HPWF  217



Lambda      K        H        a         alpha
   0.319    0.139    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00012732

Length=670
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  125     2e-33
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            102     7e-25


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 125 bits (317),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 72/316 (23%), Positives = 114/316 (36%), Gaps = 100/316 (32%)

Query  338  YRKLRQLGQGTFSQVSLAVRMENRESSQVQDGPVMDGLAPTTQKLVAVKIIEYGPAGGAD  397
            Y  LR+LG G+F  V  A   +                   T K+VA+K I+        
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRD-------------------TGKIVAIKKIKKEKIKKKK  41

Query  398  EERLEVSLKREVEILKSVNHPSLVQLKAFGSDQKRALLVLDYCPGGDLFDVAASGVKPMS  457
            ++ +     RE++ILK +NHP++V+L     D+    LVL+Y  GG LFD+  S     S
Sbjct  42   DKNI----LREIKILKKLNHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDL-LSEKGAFS  96

Query  458  PALIRRIFAELVDAVRYLHRNYIVHRDIKLENVLVTLPPTAMEKITDWRTYDCAVVTLSD  517
                + I  ++++ +                                             
Sbjct  97   EREAKFIMKQILEGLES-------------------------------------------  113

Query  518  LGLSRRIPEPPESPLLQTRCGSEDYAAPEILMGQPYDGRLTDAWALGVLLYAMMENRLPF  577
                           L T  G+  Y APE+L G PY G   D W+LG +LY ++  + PF
Sbjct  114  ------------GSSLTTFVGTPWYMAPEVLGGNPY-GPKVDVWSLGCILYELLTGKPPF  160

Query  578  DALPGARGDPEKLRARTPHRIARCEWAWYRYADSDGEWDPVKGKDLEGARECVEGLLKRN  637
               PG  G+           I    +A+     +  E      KDL      ++ LLK++
Sbjct  161  ---PGINGNEIY------ELIIDQPYAFPELPSNLSEE----AKDL------LKKLLKKD  201

Query  638  -TRRKGLDEIAALDWV  652
             ++R    +     W 
Sbjct  202  PSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 102 bits (257),  Expect = 7e-25, Method: Composition-based stats.
 Identities = 68/255 (27%), Positives = 105/255 (41%), Gaps = 53/255 (21%)

Query  339  RKLRQLGQGTFSQVSLAVRMENRESSQVQDGPVMDGLAPTTQKLVAVKIIEYGPAGGADE  398
                +LG+G F +V         E+++++               VAVK ++ G    ADE
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIK---------------VAVKTLKEG----ADE  42

Query  399  ERLEVSLKREVEILKSVNHPSLVQLKAFGSDQKRALLVLDYCPGGDLFD-VAASGVKPMS  457
            E  E     E  I+K ++HP++V+L    +  +   +V +Y PGGDL D +     K   
Sbjct  43   EERE-DFLEEASIMKKLDHPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTL  101

Query  458  PALIRRIFA-ELVDAVRYLHRNYIVHRDIKLENVLVTLPPTAMEKITDWRTYDCAVVTLS  516
              L+    A ++   + YL     VHRD+   N LV+       KI             S
Sbjct  102  KDLLS--MALQIAKGMEYLESKNFVHRDLAARNCLVSENLVV--KI-------------S  144

Query  517  DLGLSRRIPEPPESPLLQTRCGSED---YAAPEILMGQPYDGRLT---DAWALGVLLYAM  570
            D GLSR I +       + R G +    + APE L     DG+ T   D W+ GVLL+ +
Sbjct  145  DFGLSRDIYDDDY---YRKRGGGKLPIKWMAPESLK----DGKFTSKSDVWSFGVLLWEI  197

Query  571  MEN-RLPFDALPGAR  584
                  P+  +    
Sbjct  198  FTLGEQPYPGMSNEE  212



Lambda      K        H        a         alpha
   0.314    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 850953830


Query= TCONS_00012733

Length=670
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  125     2e-33
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            102     7e-25


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 125 bits (317),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 72/316 (23%), Positives = 114/316 (36%), Gaps = 100/316 (32%)

Query  338  YRKLRQLGQGTFSQVSLAVRMENRESSQVQDGPVMDGLAPTTQKLVAVKIIEYGPAGGAD  397
            Y  LR+LG G+F  V  A   +                   T K+VA+K I+        
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRD-------------------TGKIVAIKKIKKEKIKKKK  41

Query  398  EERLEVSLKREVEILKSVNHPSLVQLKAFGSDQKRALLVLDYCPGGDLFDVAASGVKPMS  457
            ++ +     RE++ILK +NHP++V+L     D+    LVL+Y  GG LFD+  S     S
Sbjct  42   DKNI----LREIKILKKLNHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDL-LSEKGAFS  96

Query  458  PALIRRIFAELVDAVRYLHRNYIVHRDIKLENVLVTLPPTAMEKITDWRTYDCAVVTLSD  517
                + I  ++++ +                                             
Sbjct  97   EREAKFIMKQILEGLES-------------------------------------------  113

Query  518  LGLSRRIPEPPESPLLQTRCGSEDYAAPEILMGQPYDGRLTDAWALGVLLYAMMENRLPF  577
                           L T  G+  Y APE+L G PY G   D W+LG +LY ++  + PF
Sbjct  114  ------------GSSLTTFVGTPWYMAPEVLGGNPY-GPKVDVWSLGCILYELLTGKPPF  160

Query  578  DALPGARGDPEKLRARTPHRIARCEWAWYRYADSDGEWDPVKGKDLEGARECVEGLLKRN  637
               PG  G+           I    +A+     +  E      KDL      ++ LLK++
Sbjct  161  ---PGINGNEIY------ELIIDQPYAFPELPSNLSEE----AKDL------LKKLLKKD  201

Query  638  -TRRKGLDEIAALDWV  652
             ++R    +     W 
Sbjct  202  PSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 102 bits (257),  Expect = 7e-25, Method: Composition-based stats.
 Identities = 68/255 (27%), Positives = 105/255 (41%), Gaps = 53/255 (21%)

Query  339  RKLRQLGQGTFSQVSLAVRMENRESSQVQDGPVMDGLAPTTQKLVAVKIIEYGPAGGADE  398
                +LG+G F +V         E+++++               VAVK ++ G    ADE
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIK---------------VAVKTLKEG----ADE  42

Query  399  ERLEVSLKREVEILKSVNHPSLVQLKAFGSDQKRALLVLDYCPGGDLFD-VAASGVKPMS  457
            E  E     E  I+K ++HP++V+L    +  +   +V +Y PGGDL D +     K   
Sbjct  43   EERE-DFLEEASIMKKLDHPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTL  101

Query  458  PALIRRIFA-ELVDAVRYLHRNYIVHRDIKLENVLVTLPPTAMEKITDWRTYDCAVVTLS  516
              L+    A ++   + YL     VHRD+   N LV+       KI             S
Sbjct  102  KDLLS--MALQIAKGMEYLESKNFVHRDLAARNCLVSENLVV--KI-------------S  144

Query  517  DLGLSRRIPEPPESPLLQTRCGSED---YAAPEILMGQPYDGRLT---DAWALGVLLYAM  570
            D GLSR I +       + R G +    + APE L     DG+ T   D W+ GVLL+ +
Sbjct  145  DFGLSRDIYDDDY---YRKRGGGKLPIKWMAPESLK----DGKFTSKSDVWSFGVLLWEI  197

Query  571  MEN-RLPFDALPGAR  584
                  P+  +    
Sbjct  198  FTLGEQPYPGMSNEE  212



Lambda      K        H        a         alpha
   0.314    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 850953830


Query= TCONS_00018469

Length=606
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    791     0.0  


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 791 bits (2046),  Expect = 0.0, Method: Composition-based stats.
 Identities = 273/534 (51%), Positives = 354/534 (66%), Gaps = 23/534 (4%)

Query  69   KAQVGISSVWYNGNPCNMHLLDLSNRVREGVQKAGLVGFQFNTVGVSDAISMGTKGMRYS  128
            K  +GI++ + +  PC++HL +L+  V+EGV++AG V  +FNT+GV D I+MG +GMRYS
Sbjct  1    KPIIGIANSYSDLVPCHVHLRELAEAVKEGVREAGGVPAEFNTIGVCDGIAMGHEGMRYS  60

Query  129  LQSRDLIADSIETVMGGQWYDANISIPGCDKNMPGVLMAMGRVNRPSLMVYGGTIKPGCA  188
            L SR+LIADSIE ++    +D  + I GCDK +PG+LMA  R+N P++ V GG + PG +
Sbjct  61   LPSRELIADSIEEMLRAHPFDGLVLIGGCDKIVPGMLMAAARLNIPAIFVSGGPMLPGGS  120

Query  189  RTQNNADIDIVSAFQAYGQFLTGEITENQRFDIIRNACPGGGACGGMYTANTMATAIEVM  248
             T           F+A G +  G+I+E +  +I R ACPG G+CGGM TANTMA   E +
Sbjct  121  GT---------DEFEAVGAYAAGKISEEELLEIERAACPGCGSCGGMGTANTMACLAEAL  171

Query  249  GMTLPGSSSNPAESKAKDLECLAAGEAIKRLLKEDIRPSDILTRQAFENAMIVVNITGGS  308
            G++LPGS++ PA S  +      AG  I  L++EDI+P DILTR+AFENA++V    GGS
Sbjct  172  GLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIKPRDILTRKAFENAIVVDMALGGS  231

Query  309  TNAVLHLIAIADSVGIKLDIEDFQKVSDRTPFLADLKPSGKYVMADLHNIGGTPSLLKFL  368
            TNAVLHL+AIA   G+ L ++DF ++S + P LADLKPSGKY+M D H  GG P++LK L
Sbjct  232  TNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLKPSGKYLMEDFHRAGGVPAVLKEL  291

Query  369  LKEGVIDGSGMTVTGETLAKNLEKVPDFPADQKIIRPLSNPIKKTGHIQILRGSLAPGGS  428
            L    + G  +TVTG+TL +NL        DQ +IRPL NPI  TG + +L+G+LAP G+
Sbjct  292  LDAL-LHGDVLTVTGKTLGENLAD--AEVRDQDVIRPLDNPISPTGGLAVLKGNLAPDGA  348

Query  429  VGKITGK--EGTRFVGKARVFDDEDDFIAALERNEIKKEEKTVVVIRYTGPKGGPGMPEM  486
            V K +    E   F G ARVFD E+D +AA+   +IK  +  VVVIRY GPKGGPGMPEM
Sbjct  349  VVKTSAVDPEMLVFEGPARVFDSEEDALAAILDGKIKAGD--VVVIRYEGPKGGPGMPEM  406

Query  487  LKPSSALMGAGLGSSCALITDGRFSGGSHGFLIGHIVPEAAVGGPIGLVKDGDTITIDAE  546
            L P+SAL+GAGLG   ALITDGRFSG S G  IGH+ PEAAVGGPI LV+DGD I ID  
Sbjct  407  LTPTSALLGAGLGKDVALITDGRFSGASRGPSIGHVSPEAAVGGPIALVRDGDIIRIDIP  466

Query  547  KRLLDLDVDETELARRRKEWEALRDAGKLPQTGLTMRGTLGKYARTVKDASHGC  600
             R LDL V + ELA RR  W       K P+  +  RG L KYA+ V  AS G 
Sbjct  467  NRTLDLLVSDEELAARRAAW-------KPPEPKVKGRGYLAKYAKLVSSASEGA  513



Lambda      K        H        a         alpha
   0.316    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 768135992


Query= TCONS_00018470

Length=551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    786     0.0  


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 786 bits (2034),  Expect = 0.0, Method: Composition-based stats.
 Identities = 273/534 (51%), Positives = 354/534 (66%), Gaps = 23/534 (4%)

Query  14   KAQVGISSVWYNGNPCNMHLLDLSNRVREGVQKAGLVGFQFNTVGVSDAISMGTKGMRYS  73
            K  +GI++ + +  PC++HL +L+  V+EGV++AG V  +FNT+GV D I+MG +GMRYS
Sbjct  1    KPIIGIANSYSDLVPCHVHLRELAEAVKEGVREAGGVPAEFNTIGVCDGIAMGHEGMRYS  60

Query  74   LQSRDLIADSIETVMGGQWYDANISIPGCDKNMPGVLMAMGRVNRPSLMVYGGTIKPGCA  133
            L SR+LIADSIE ++    +D  + I GCDK +PG+LMA  R+N P++ V GG + PG +
Sbjct  61   LPSRELIADSIEEMLRAHPFDGLVLIGGCDKIVPGMLMAAARLNIPAIFVSGGPMLPGGS  120

Query  134  RTQNNADIDIVSAFQAYGQFLTGEITENQRFDIIRNACPGGGACGGMYTANTMATAIEVM  193
             T           F+A G +  G+I+E +  +I R ACPG G+CGGM TANTMA   E +
Sbjct  121  GT---------DEFEAVGAYAAGKISEEELLEIERAACPGCGSCGGMGTANTMACLAEAL  171

Query  194  GMTLPGSSSNPAESKAKDLECLAAGEAIKRLLKEDIRPSDILTRQAFENAMIVVNITGGS  253
            G++LPGS++ PA S  +      AG  I  L++EDI+P DILTR+AFENA++V    GGS
Sbjct  172  GLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIKPRDILTRKAFENAIVVDMALGGS  231

Query  254  TNAVLHLIAIADSVGIKLDIEDFQKVSDRTPFLADLKPSGKYVMADLHNIGGTPSLLKFL  313
            TNAVLHL+AIA   G+ L ++DF ++S + P LADLKPSGKY+M D H  GG P++LK L
Sbjct  232  TNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLKPSGKYLMEDFHRAGGVPAVLKEL  291

Query  314  LKEGVIDGSGMTVTGETLAKNLEKVPDFPADQKIIRPLSNPIKKTGHIQILRGSLAPGGS  373
            L    + G  +TVTG+TL +NL        DQ +IRPL NPI  TG + +L+G+LAP G+
Sbjct  292  LDAL-LHGDVLTVTGKTLGENLAD--AEVRDQDVIRPLDNPISPTGGLAVLKGNLAPDGA  348

Query  374  VGKITGK--EGTRFVGKARVFDDEDDFIAALERNEIKKEEKTVVVIRYTGPKGGPGMPEM  431
            V K +    E   F G ARVFD E+D +AA+   +IK  +  VVVIRY GPKGGPGMPEM
Sbjct  349  VVKTSAVDPEMLVFEGPARVFDSEEDALAAILDGKIKAGD--VVVIRYEGPKGGPGMPEM  406

Query  432  LKPSSALMGAGLGSSCALITDGRFSGGSHGFLIGHIVPEAAVGGPIGLVKDGDTITIDAE  491
            L P+SAL+GAGLG   ALITDGRFSG S G  IGH+ PEAAVGGPI LV+DGD I ID  
Sbjct  407  LTPTSALLGAGLGKDVALITDGRFSGASRGPSIGHVSPEAAVGGPIALVRDGDIIRIDIP  466

Query  492  KRLLDLDVDETELARRRKEWEALRDAGKLPQTGLTMRGTLGKYARTVKDASHGC  545
             R LDL V + ELA RR  W       K P+  +  RG L KYA+ V  AS G 
Sbjct  467  NRTLDLLVSDEELAARRAAW-------KPPEPKVKGRGYLAKYAKLVSSASEGA  513



Lambda      K        H        a         alpha
   0.317    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685942452


Query= TCONS_00012734

Length=606
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    791     0.0  


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 791 bits (2046),  Expect = 0.0, Method: Composition-based stats.
 Identities = 273/534 (51%), Positives = 354/534 (66%), Gaps = 23/534 (4%)

Query  69   KAQVGISSVWYNGNPCNMHLLDLSNRVREGVQKAGLVGFQFNTVGVSDAISMGTKGMRYS  128
            K  +GI++ + +  PC++HL +L+  V+EGV++AG V  +FNT+GV D I+MG +GMRYS
Sbjct  1    KPIIGIANSYSDLVPCHVHLRELAEAVKEGVREAGGVPAEFNTIGVCDGIAMGHEGMRYS  60

Query  129  LQSRDLIADSIETVMGGQWYDANISIPGCDKNMPGVLMAMGRVNRPSLMVYGGTIKPGCA  188
            L SR+LIADSIE ++    +D  + I GCDK +PG+LMA  R+N P++ V GG + PG +
Sbjct  61   LPSRELIADSIEEMLRAHPFDGLVLIGGCDKIVPGMLMAAARLNIPAIFVSGGPMLPGGS  120

Query  189  RTQNNADIDIVSAFQAYGQFLTGEITENQRFDIIRNACPGGGACGGMYTANTMATAIEVM  248
             T           F+A G +  G+I+E +  +I R ACPG G+CGGM TANTMA   E +
Sbjct  121  GT---------DEFEAVGAYAAGKISEEELLEIERAACPGCGSCGGMGTANTMACLAEAL  171

Query  249  GMTLPGSSSNPAESKAKDLECLAAGEAIKRLLKEDIRPSDILTRQAFENAMIVVNITGGS  308
            G++LPGS++ PA S  +      AG  I  L++EDI+P DILTR+AFENA++V    GGS
Sbjct  172  GLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIKPRDILTRKAFENAIVVDMALGGS  231

Query  309  TNAVLHLIAIADSVGIKLDIEDFQKVSDRTPFLADLKPSGKYVMADLHNIGGTPSLLKFL  368
            TNAVLHL+AIA   G+ L ++DF ++S + P LADLKPSGKY+M D H  GG P++LK L
Sbjct  232  TNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLKPSGKYLMEDFHRAGGVPAVLKEL  291

Query  369  LKEGVIDGSGMTVTGETLAKNLEKVPDFPADQKIIRPLSNPIKKTGHIQILRGSLAPGGS  428
            L    + G  +TVTG+TL +NL        DQ +IRPL NPI  TG + +L+G+LAP G+
Sbjct  292  LDAL-LHGDVLTVTGKTLGENLAD--AEVRDQDVIRPLDNPISPTGGLAVLKGNLAPDGA  348

Query  429  VGKITGK--EGTRFVGKARVFDDEDDFIAALERNEIKKEEKTVVVIRYTGPKGGPGMPEM  486
            V K +    E   F G ARVFD E+D +AA+   +IK  +  VVVIRY GPKGGPGMPEM
Sbjct  349  VVKTSAVDPEMLVFEGPARVFDSEEDALAAILDGKIKAGD--VVVIRYEGPKGGPGMPEM  406

Query  487  LKPSSALMGAGLGSSCALITDGRFSGGSHGFLIGHIVPEAAVGGPIGLVKDGDTITIDAE  546
            L P+SAL+GAGLG   ALITDGRFSG S G  IGH+ PEAAVGGPI LV+DGD I ID  
Sbjct  407  LTPTSALLGAGLGKDVALITDGRFSGASRGPSIGHVSPEAAVGGPIALVRDGDIIRIDIP  466

Query  547  KRLLDLDVDETELARRRKEWEALRDAGKLPQTGLTMRGTLGKYARTVKDASHGC  600
             R LDL V + ELA RR  W       K P+  +  RG L KYA+ V  AS G 
Sbjct  467  NRTLDLLVSDEELAARRAAW-------KPPEPKVKGRGYLAKYAKLVSSASEGA  513



Lambda      K        H        a         alpha
   0.316    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 768135992


Query= TCONS_00012735

Length=629
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    782     0.0  


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 782 bits (2023),  Expect = 0.0, Method: Composition-based stats.
 Identities = 270/527 (51%), Positives = 351/527 (67%), Gaps = 23/527 (4%)

Query  69   KAQVGISSVWYNGNPCNMHLLDLSNRVREGVQKAGLVGFQFNTVGVSDAISMGTKGMRYS  128
            K  +GI++ + +  PC++HL +L+  V+EGV++AG V  +FNT+GV D I+MG +GMRYS
Sbjct  1    KPIIGIANSYSDLVPCHVHLRELAEAVKEGVREAGGVPAEFNTIGVCDGIAMGHEGMRYS  60

Query  129  LQSRDLIADSIETVMGGQWYDANISIPGCDKNMPGVLMAMGRVNRPSLMVYGGTIKPGCA  188
            L SR+LIADSIE ++    +D  + I GCDK +PG+LMA  R+N P++ V GG + PG +
Sbjct  61   LPSRELIADSIEEMLRAHPFDGLVLIGGCDKIVPGMLMAAARLNIPAIFVSGGPMLPGGS  120

Query  189  RTQNNADIDIVSAFQAYGQFLTGEITENQRFDIIRNACPGGGACGGMYTANTMATAIEVM  248
             T           F+A G +  G+I+E +  +I R ACPG G+CGGM TANTMA   E +
Sbjct  121  GT---------DEFEAVGAYAAGKISEEELLEIERAACPGCGSCGGMGTANTMACLAEAL  171

Query  249  GMTLPGSSSNPAESKAKDLECLAAGEAIKRLLKEDIRPSDILTRQAFENAMIVVNITGGS  308
            G++LPGS++ PA S  +      AG  I  L++EDI+P DILTR+AFENA++V    GGS
Sbjct  172  GLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIKPRDILTRKAFENAIVVDMALGGS  231

Query  309  TNAVLHLIAIADSVGIKLDIEDFQKVSDRTPFLADLKPSGKYVMADLHNIGGTPSLLKFL  368
            TNAVLHL+AIA   G+ L ++DF ++S + P LADLKPSGKY+M D H  GG P++LK L
Sbjct  232  TNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLKPSGKYLMEDFHRAGGVPAVLKEL  291

Query  369  LKEGVIDGSGMTVTGETLAKNLEKVPDFPADQKIIRPLSNPIKKTGHIQILRGSLAPGGS  428
            L    + G  +TVTG+TL +NL        DQ +IRPL NPI  TG + +L+G+LAP G+
Sbjct  292  LDAL-LHGDVLTVTGKTLGENLAD--AEVRDQDVIRPLDNPISPTGGLAVLKGNLAPDGA  348

Query  429  VGKITGK--EGTRFVGKARVFDDEDDFIAALERNEIKKEEKTVVVIRYTGPKGGPGMPEM  486
            V K +    E   F G ARVFD E+D +AA+   +IK  +  VVVIRY GPKGGPGMPEM
Sbjct  349  VVKTSAVDPEMLVFEGPARVFDSEEDALAAILDGKIKAGD--VVVIRYEGPKGGPGMPEM  406

Query  487  LKPSSALMGAGLGSSCALITDGRFSGGSHGFLIGHIVPEAAVGGPIGLVKDGDTITIDAE  546
            L P+SAL+GAGLG   ALITDGRFSG S G  IGH+ PEAAVGGPI LV+DGD I ID  
Sbjct  407  LTPTSALLGAGLGKDVALITDGRFSGASRGPSIGHVSPEAAVGGPIALVRDGDIIRIDIP  466

Query  547  KRLLDLDVDETELARRRKEWEALRDAGKLPQTGLTMRGTLGKYARYV  593
             R LDL V + ELA RR  W       K P+  +  RG L KYA+ V
Sbjct  467  NRTLDLLVSDEELAARRAAW-------KPPEPKVKGRGYLAKYAKLV  506



Lambda      K        H        a         alpha
   0.317    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790487440


Query= TCONS_00018471

Length=448


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00018472

Length=853


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1088119612


Query= TCONS_00012736

Length=844


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0647    0.140     1.90     42.6     43.6 

Effective search space used: 1075199986


Query= TCONS_00012738

Length=834


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1060844846


Query= TCONS_00012739

Length=1011


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1295526540


Query= TCONS_00012741

Length=903


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1159895312


Query= TCONS_00012740

Length=1008


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1291278912


Query= TCONS_00012742

Length=959


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1221900988


Query= TCONS_00012743

Length=769
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459720 pfam00225, Kinesin, Kinesin motor domain                   403     3e-136
CDD:465274 pfam16796, Microtub_bd, Microtubule binding. This moto...  234     6e-74 


>CDD:459720 pfam00225, Kinesin, Kinesin motor domain.  
Length=326

 Score = 403 bits (1039),  Expect = 3e-136, Method: Composition-based stats.
 Identities = 148/337 (44%), Positives = 201/337 (60%), Gaps = 19/337 (6%)

Query  427  RVRPSLESEVAETAQIEYPDQSDECKEICLLGPEERSALGTVTRKNNSFTFDRVFGPSTQ  486
            RVRP  E E            S       +      S+  T   +  +FTFD+VF P   
Sbjct  1    RVRPLNEREKER-------GSSVIVSVESVDSETVESSHLTNKNRTKTFTFDKVFDPEAT  53

Query  487  NAEVFEE-ISQLVQSALDGYNVCIFCYGQTGSGKTYTMSSLD---GMIPRAVHQIYQTAQ  542
              +V+EE    LV+S L+GYNV IF YGQTGSGKTYTM   D   G+IPRA+  ++   Q
Sbjct  54   QEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQ  113

Query  543  SLEEKGWRYTMEGNFVEVYNENLNDLLGKAEELDKKKHEIRHDMQRCKTTITDITTVRLE  602
              +E+   ++++ +++E+YNE + DLL  + + +K+K  IR D ++    +  +T V + 
Sbjct  114  KTKER-SEFSVKVSYLEIYNEKIRDLLSPSNK-NKRKLRIREDPKK-GVYVKGLTEVEVS  170

Query  603  SPEMVESMLKRAAANRSVAATKANERSSRSHSVFILKLLGENHITGERSE---GTLNLVD  659
            S E V  +L+    NR+VAATK NE SSRSH++F + +   N  TG       G LNLVD
Sbjct  171  SAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGEESVKTGKLNLVD  230

Query  660  LAGSERLSHSQ-ATGERLKETQNINRSLSCLGDVIAALGQGKEGGHIPYRNSKLTYLLQF  718
            LAGSER S +  A G+RLKE  NIN+SLS LG+VI+AL   K   HIPYR+SKLT LLQ 
Sbjct  231  LAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKSK-HIPYRDSKLTRLLQD  289

Query  719  SLGGNSKTLMFVMCSPLQAHLAETLTSLKFATKVHNT  755
            SLGGNSKTLM    SP  ++  ETL++L+FA++  N 
Sbjct  290  SLGGNSKTLMIANISPSSSNYEETLSTLRFASRAKNI  326


>CDD:465274 pfam16796, Microtub_bd, Microtubule binding.  This motor homology 
domain binds microtubules and lacks an ATP-binding site.
Length=144

 Score = 234 bits (600),  Expect = 6e-74, Method: Composition-based stats.
 Identities = 98/169 (58%), Positives = 115/169 (68%), Gaps = 25/169 (15%)

Query  401  LRKEETLRRKLHNQVQELKGNIRVFCRVRPSLESEVAETAQIEYPDQSDECKEICLLGPE  460
            L +EETLRRKL N +QELKGNIRVF RVRP L SE    AQI+YPD              
Sbjct  1    LEEEETLRRKLENSIQELKGNIRVFARVRPELLSE----AQIDYPD--------------  42

Query  461  ERSALGTVTRKNNSFTFDRVFGPSTQNAEVFEEISQLVQSALDGYNVCIFCYGQTGSGKT  520
            E S+ G +  KN SF+FDRVF P ++  +VF+EISQLVQS LDGYNVCIF YGQTGSG  
Sbjct  43   ETSSDGKIGSKNKSFSFDRVFPPESEQEDVFQEISQLVQSCLDGYNVCIFAYGQTGSGSN  102

Query  521  YTMSSLDGMIPRAVHQIYQTAQSLEEKGWRYTMEGNFVEVYNENLNDLL  569
                  DGMIPRA  QI++   SL +KGW+YT+E  FVE+YNE+  DLL
Sbjct  103  ------DGMIPRAREQIFRFISSL-KKGWKYTIELQFVEIYNESSQDLL  144



Lambda      K        H        a         alpha
   0.312    0.125    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 982227600


Query= TCONS_00012747

Length=788
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459720 pfam00225, Kinesin, Kinesin motor domain                   404     3e-136
CDD:465274 pfam16796, Microtub_bd, Microtubule binding. This moto...  234     8e-74 


>CDD:459720 pfam00225, Kinesin, Kinesin motor domain.  
Length=326

 Score = 404 bits (1041),  Expect = 3e-136, Method: Composition-based stats.
 Identities = 148/337 (44%), Positives = 201/337 (60%), Gaps = 19/337 (6%)

Query  446  RVRPSLESEVAETAQIEYPDQSDECKEICLLGPEERSALGTVTRKNNSFTFDRVFGPSTQ  505
            RVRP  E E            S       +      S+  T   +  +FTFD+VF P   
Sbjct  1    RVRPLNEREKER-------GSSVIVSVESVDSETVESSHLTNKNRTKTFTFDKVFDPEAT  53

Query  506  NAEVFEE-ISQLVQSALDGYNVCIFCYGQTGSGKTYTMSSLD---GMIPRAVHQIYQTAQ  561
              +V+EE    LV+S L+GYNV IF YGQTGSGKTYTM   D   G+IPRA+  ++   Q
Sbjct  54   QEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQ  113

Query  562  SLEEKGWRYTMEGNFVEVYNENLNDLLGKAEELDKKKHEIRHDMQRCKTTITDITTVRLE  621
              +E+   ++++ +++E+YNE + DLL  + + +K+K  IR D ++    +  +T V + 
Sbjct  114  KTKER-SEFSVKVSYLEIYNEKIRDLLSPSNK-NKRKLRIREDPKK-GVYVKGLTEVEVS  170

Query  622  SPEMVESMLKRAAANRSVAATKANERSSRSHSVFILKLLGENHITGERSE---GTLNLVD  678
            S E V  +L+    NR+VAATK NE SSRSH++F + +   N  TG       G LNLVD
Sbjct  171  SAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGEESVKTGKLNLVD  230

Query  679  LAGSERLSHSQ-ATGERLKETQNINRSLSCLGDVIAALGQGKEGGHIPYRNSKLTYLLQF  737
            LAGSER S +  A G+RLKE  NIN+SLS LG+VI+AL   K   HIPYR+SKLT LLQ 
Sbjct  231  LAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKSK-HIPYRDSKLTRLLQD  289

Query  738  SLGGNSKTLMFVMCSPLQAHLAETLTSLKFATKVHNT  774
            SLGGNSKTLM    SP  ++  ETL++L+FA++  N 
Sbjct  290  SLGGNSKTLMIANISPSSSNYEETLSTLRFASRAKNI  326


>CDD:465274 pfam16796, Microtub_bd, Microtubule binding.  This motor homology 
domain binds microtubules and lacks an ATP-binding site.
Length=144

 Score = 234 bits (600),  Expect = 8e-74, Method: Composition-based stats.
 Identities = 98/169 (58%), Positives = 115/169 (68%), Gaps = 25/169 (15%)

Query  420  LRKEETLRRKLHNQVQELKGNIRVFCRVRPSLESEVAETAQIEYPDQSDECKEICLLGPE  479
            L +EETLRRKL N +QELKGNIRVF RVRP L SE    AQI+YPD              
Sbjct  1    LEEEETLRRKLENSIQELKGNIRVFARVRPELLSE----AQIDYPD--------------  42

Query  480  ERSALGTVTRKNNSFTFDRVFGPSTQNAEVFEEISQLVQSALDGYNVCIFCYGQTGSGKT  539
            E S+ G +  KN SF+FDRVF P ++  +VF+EISQLVQS LDGYNVCIF YGQTGSG  
Sbjct  43   ETSSDGKIGSKNKSFSFDRVFPPESEQEDVFQEISQLVQSCLDGYNVCIFAYGQTGSGSN  102

Query  540  YTMSSLDGMIPRAVHQIYQTAQSLEEKGWRYTMEGNFVEVYNENLNDLL  588
                  DGMIPRA  QI++   SL +KGW+YT+E  FVE+YNE+  DLL
Sbjct  103  ------DGMIPRAREQIFRFISSL-KKGWKYTIELQFVEIYNESSQDLL  144



Lambda      K        H        a         alpha
   0.312    0.125    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1009875488


Query= TCONS_00012744

Length=710
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459720 pfam00225, Kinesin, Kinesin motor domain                   403     6e-137
CDD:465274 pfam16796, Microtub_bd, Microtubule binding. This moto...  231     3e-73 


>CDD:459720 pfam00225, Kinesin, Kinesin motor domain.  
Length=326

 Score = 403 bits (1039),  Expect = 6e-137, Method: Composition-based stats.
 Identities = 148/337 (44%), Positives = 201/337 (60%), Gaps = 19/337 (6%)

Query  368  RVRPSLESEVAETAQIEYPDQSDECKEICLLGPEERSALGTVTRKNNSFTFDRVFGPSTQ  427
            RVRP  E E            S       +      S+  T   +  +FTFD+VF P   
Sbjct  1    RVRPLNEREKER-------GSSVIVSVESVDSETVESSHLTNKNRTKTFTFDKVFDPEAT  53

Query  428  NAEVFEE-ISQLVQSALDGYNVCIFCYGQTGSGKTYTMSSLD---GMIPRAVHQIYQTAQ  483
              +V+EE    LV+S L+GYNV IF YGQTGSGKTYTM   D   G+IPRA+  ++   Q
Sbjct  54   QEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQ  113

Query  484  SLEEKGWRYTMEGNFVEVYNENLNDLLGKAEELDKKKHEIRHDMQRCKTTITDITTVRLE  543
              +E+   ++++ +++E+YNE + DLL  + + +K+K  IR D ++    +  +T V + 
Sbjct  114  KTKER-SEFSVKVSYLEIYNEKIRDLLSPSNK-NKRKLRIREDPKK-GVYVKGLTEVEVS  170

Query  544  SPEMVESMLKRAAANRSVAATKANERSSRSHSVFILKLLGENHITGERSE---GTLNLVD  600
            S E V  +L+    NR+VAATK NE SSRSH++F + +   N  TG       G LNLVD
Sbjct  171  SAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGEESVKTGKLNLVD  230

Query  601  LAGSERLSHSQ-ATGERLKETQNINRSLSCLGDVIAALGQGKEGGHIPYRNSKLTYLLQF  659
            LAGSER S +  A G+RLKE  NIN+SLS LG+VI+AL   K   HIPYR+SKLT LLQ 
Sbjct  231  LAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKSK-HIPYRDSKLTRLLQD  289

Query  660  SLGGNSKTLMFVMCSPLQAHLAETLTSLKFATKVHNT  696
            SLGGNSKTLM    SP  ++  ETL++L+FA++  N 
Sbjct  290  SLGGNSKTLMIANISPSSSNYEETLSTLRFASRAKNI  326


>CDD:465274 pfam16796, Microtub_bd, Microtubule binding.  This motor homology 
domain binds microtubules and lacks an ATP-binding site.
Length=144

 Score = 231 bits (592),  Expect = 3e-73, Method: Composition-based stats.
 Identities = 98/169 (58%), Positives = 115/169 (68%), Gaps = 25/169 (15%)

Query  342  LRKEETLRRKLHNQVQELKGNIRVFCRVRPSLESEVAETAQIEYPDQSDECKEICLLGPE  401
            L +EETLRRKL N +QELKGNIRVF RVRP L SE    AQI+YPD              
Sbjct  1    LEEEETLRRKLENSIQELKGNIRVFARVRPELLSE----AQIDYPD--------------  42

Query  402  ERSALGTVTRKNNSFTFDRVFGPSTQNAEVFEEISQLVQSALDGYNVCIFCYGQTGSGKT  461
            E S+ G +  KN SF+FDRVF P ++  +VF+EISQLVQS LDGYNVCIF YGQTGSG  
Sbjct  43   ETSSDGKIGSKNKSFSFDRVFPPESEQEDVFQEISQLVQSCLDGYNVCIFAYGQTGSGSN  102

Query  462  YTMSSLDGMIPRAVHQIYQTAQSLEEKGWRYTMEGNFVEVYNENLNDLL  510
                  DGMIPRA  QI++   SL +KGW+YT+E  FVE+YNE+  DLL
Sbjct  103  ------DGMIPRAREQIFRFISSL-KKGWKYTIELQFVEIYNESSQDLL  144



Lambda      K        H        a         alpha
   0.313    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 909945430


Query= TCONS_00012745

Length=769
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459720 pfam00225, Kinesin, Kinesin motor domain                   403     3e-136
CDD:465274 pfam16796, Microtub_bd, Microtubule binding. This moto...  234     6e-74 


>CDD:459720 pfam00225, Kinesin, Kinesin motor domain.  
Length=326

 Score = 403 bits (1039),  Expect = 3e-136, Method: Composition-based stats.
 Identities = 148/337 (44%), Positives = 201/337 (60%), Gaps = 19/337 (6%)

Query  427  RVRPSLESEVAETAQIEYPDQSDECKEICLLGPEERSALGTVTRKNNSFTFDRVFGPSTQ  486
            RVRP  E E            S       +      S+  T   +  +FTFD+VF P   
Sbjct  1    RVRPLNEREKER-------GSSVIVSVESVDSETVESSHLTNKNRTKTFTFDKVFDPEAT  53

Query  487  NAEVFEE-ISQLVQSALDGYNVCIFCYGQTGSGKTYTMSSLD---GMIPRAVHQIYQTAQ  542
              +V+EE    LV+S L+GYNV IF YGQTGSGKTYTM   D   G+IPRA+  ++   Q
Sbjct  54   QEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQ  113

Query  543  SLEEKGWRYTMEGNFVEVYNENLNDLLGKAEELDKKKHEIRHDMQRCKTTITDITTVRLE  602
              +E+   ++++ +++E+YNE + DLL  + + +K+K  IR D ++    +  +T V + 
Sbjct  114  KTKER-SEFSVKVSYLEIYNEKIRDLLSPSNK-NKRKLRIREDPKK-GVYVKGLTEVEVS  170

Query  603  SPEMVESMLKRAAANRSVAATKANERSSRSHSVFILKLLGENHITGERSE---GTLNLVD  659
            S E V  +L+    NR+VAATK NE SSRSH++F + +   N  TG       G LNLVD
Sbjct  171  SAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGEESVKTGKLNLVD  230

Query  660  LAGSERLSHSQ-ATGERLKETQNINRSLSCLGDVIAALGQGKEGGHIPYRNSKLTYLLQF  718
            LAGSER S +  A G+RLKE  NIN+SLS LG+VI+AL   K   HIPYR+SKLT LLQ 
Sbjct  231  LAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKSK-HIPYRDSKLTRLLQD  289

Query  719  SLGGNSKTLMFVMCSPLQAHLAETLTSLKFATKVHNT  755
            SLGGNSKTLM    SP  ++  ETL++L+FA++  N 
Sbjct  290  SLGGNSKTLMIANISPSSSNYEETLSTLRFASRAKNI  326


>CDD:465274 pfam16796, Microtub_bd, Microtubule binding.  This motor homology 
domain binds microtubules and lacks an ATP-binding site.
Length=144

 Score = 234 bits (600),  Expect = 6e-74, Method: Composition-based stats.
 Identities = 98/169 (58%), Positives = 115/169 (68%), Gaps = 25/169 (15%)

Query  401  LRKEETLRRKLHNQVQELKGNIRVFCRVRPSLESEVAETAQIEYPDQSDECKEICLLGPE  460
            L +EETLRRKL N +QELKGNIRVF RVRP L SE    AQI+YPD              
Sbjct  1    LEEEETLRRKLENSIQELKGNIRVFARVRPELLSE----AQIDYPD--------------  42

Query  461  ERSALGTVTRKNNSFTFDRVFGPSTQNAEVFEEISQLVQSALDGYNVCIFCYGQTGSGKT  520
            E S+ G +  KN SF+FDRVF P ++  +VF+EISQLVQS LDGYNVCIF YGQTGSG  
Sbjct  43   ETSSDGKIGSKNKSFSFDRVFPPESEQEDVFQEISQLVQSCLDGYNVCIFAYGQTGSGSN  102

Query  521  YTMSSLDGMIPRAVHQIYQTAQSLEEKGWRYTMEGNFVEVYNENLNDLL  569
                  DGMIPRA  QI++   SL +KGW+YT+E  FVE+YNE+  DLL
Sbjct  103  ------DGMIPRAREQIFRFISSL-KKGWKYTIELQFVEIYNESSQDLL  144



Lambda      K        H        a         alpha
   0.312    0.125    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 982227600


Query= TCONS_00018473

Length=743
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459720 pfam00225, Kinesin, Kinesin motor domain                   334     8e-110
CDD:465274 pfam16796, Microtub_bd, Microtubule binding. This moto...  234     6e-74 


>CDD:459720 pfam00225, Kinesin, Kinesin motor domain.  
Length=326

 Score = 334 bits (860),  Expect = 8e-110, Method: Composition-based stats.
 Identities = 124/293 (42%), Positives = 170/293 (58%), Gaps = 19/293 (6%)

Query  446  RVRPSLESEVAETAQIEYPDQSDECKEICLLGPEERSALGTVTRKNNSFTFDRVFGPSTQ  505
            RVRP  E E            S       +      S+  T   +  +FTFD+VF P   
Sbjct  1    RVRPLNEREKER-------GSSVIVSVESVDSETVESSHLTNKNRTKTFTFDKVFDPEAT  53

Query  506  NAEVFEE-ISQLVQSALDGYNVCIFCYGQTGSGKTYTMSSLD---GMIPRAVHQIYQTAQ  561
              +V+EE    LV+S L+GYNV IF YGQTGSGKTYTM   D   G+IPRA+  ++   Q
Sbjct  54   QEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQ  113

Query  562  SLEEKGWRYTMEGNFVEVYNENLNDLLGKAEELDKKKHEIRHDMQRCKTTITDITTVRLE  621
              +E+   ++++ +++E+YNE + DLL  + + +K+K  IR D ++    +  +T V + 
Sbjct  114  KTKER-SEFSVKVSYLEIYNEKIRDLLSPSNK-NKRKLRIREDPKK-GVYVKGLTEVEVS  170

Query  622  SPEMVESMLKRAAANRSVAATKANERSSRSHSVFILKLLGENHITGERSE---GTLNLVD  678
            S E V  +L+    NR+VAATK NE SSRSH++F + +   N  TG       G LNLVD
Sbjct  171  SAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGEESVKTGKLNLVD  230

Query  679  LAGSERLSHSQ-ATGERLKETQNINRSLSCLGDVIAALGQGKEGGHIPYRNSK  730
            LAGSER S +  A G+RLKE  NIN+SLS LG+VI+AL   K   HIPYR+SK
Sbjct  231  LAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKS-KHIPYRDSK  282


>CDD:465274 pfam16796, Microtub_bd, Microtubule binding.  This motor homology 
domain binds microtubules and lacks an ATP-binding site.
Length=144

 Score = 234 bits (599),  Expect = 6e-74, Method: Composition-based stats.
 Identities = 98/169 (58%), Positives = 115/169 (68%), Gaps = 25/169 (15%)

Query  420  LRKEETLRRKLHNQVQELKGNIRVFCRVRPSLESEVAETAQIEYPDQSDECKEICLLGPE  479
            L +EETLRRKL N +QELKGNIRVF RVRP L SE    AQI+YPD              
Sbjct  1    LEEEETLRRKLENSIQELKGNIRVFARVRPELLSE----AQIDYPD--------------  42

Query  480  ERSALGTVTRKNNSFTFDRVFGPSTQNAEVFEEISQLVQSALDGYNVCIFCYGQTGSGKT  539
            E S+ G +  KN SF+FDRVF P ++  +VF+EISQLVQS LDGYNVCIF YGQTGSG  
Sbjct  43   ETSSDGKIGSKNKSFSFDRVFPPESEQEDVFQEISQLVQSCLDGYNVCIFAYGQTGSGSN  102

Query  540  YTMSSLDGMIPRAVHQIYQTAQSLEEKGWRYTMEGNFVEVYNENLNDLL  588
                  DGMIPRA  QI++   SL +KGW+YT+E  FVE+YNE+  DLL
Sbjct  103  ------DGMIPRAREQIFRFISSL-KKGWKYTIELQFVEIYNESSQDLL  144



Lambda      K        H        a         alpha
   0.311    0.125    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 944393648


Query= TCONS_00018474

Length=787
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459720 pfam00225, Kinesin, Kinesin motor domain                   404     3e-136
CDD:465274 pfam16796, Microtub_bd, Microtubule binding. This moto...  234     7e-74 


>CDD:459720 pfam00225, Kinesin, Kinesin motor domain.  
Length=326

 Score = 404 bits (1041),  Expect = 3e-136, Method: Composition-based stats.
 Identities = 148/337 (44%), Positives = 201/337 (60%), Gaps = 19/337 (6%)

Query  445  RVRPSLESEVAETAQIEYPDQSDECKEICLLGPEERSALGTVTRKNNSFTFDRVFGPSTQ  504
            RVRP  E E            S       +      S+  T   +  +FTFD+VF P   
Sbjct  1    RVRPLNEREKER-------GSSVIVSVESVDSETVESSHLTNKNRTKTFTFDKVFDPEAT  53

Query  505  NAEVFEE-ISQLVQSALDGYNVCIFCYGQTGSGKTYTMSSLD---GMIPRAVHQIYQTAQ  560
              +V+EE    LV+S L+GYNV IF YGQTGSGKTYTM   D   G+IPRA+  ++   Q
Sbjct  54   QEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQ  113

Query  561  SLEEKGWRYTMEGNFVEVYNENLNDLLGKAEELDKKKHEIRHDMQRCKTTITDITTVRLE  620
              +E+   ++++ +++E+YNE + DLL  + + +K+K  IR D ++    +  +T V + 
Sbjct  114  KTKER-SEFSVKVSYLEIYNEKIRDLLSPSNK-NKRKLRIREDPKK-GVYVKGLTEVEVS  170

Query  621  SPEMVESMLKRAAANRSVAATKANERSSRSHSVFILKLLGENHITGERSE---GTLNLVD  677
            S E V  +L+    NR+VAATK NE SSRSH++F + +   N  TG       G LNLVD
Sbjct  171  SAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGEESVKTGKLNLVD  230

Query  678  LAGSERLSHSQ-ATGERLKETQNINRSLSCLGDVIAALGQGKEGGHIPYRNSKLTYLLQF  736
            LAGSER S +  A G+RLKE  NIN+SLS LG+VI+AL   K   HIPYR+SKLT LLQ 
Sbjct  231  LAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKSK-HIPYRDSKLTRLLQD  289

Query  737  SLGGNSKTLMFVMCSPLQAHLAETLTSLKFATKVHNT  773
            SLGGNSKTLM    SP  ++  ETL++L+FA++  N 
Sbjct  290  SLGGNSKTLMIANISPSSSNYEETLSTLRFASRAKNI  326


>CDD:465274 pfam16796, Microtub_bd, Microtubule binding.  This motor homology 
domain binds microtubules and lacks an ATP-binding site.
Length=144

 Score = 234 bits (600),  Expect = 7e-74, Method: Composition-based stats.
 Identities = 98/169 (58%), Positives = 115/169 (68%), Gaps = 25/169 (15%)

Query  419  LRKEETLRRKLHNQVQELKGNIRVFCRVRPSLESEVAETAQIEYPDQSDECKEICLLGPE  478
            L +EETLRRKL N +QELKGNIRVF RVRP L SE    AQI+YPD              
Sbjct  1    LEEEETLRRKLENSIQELKGNIRVFARVRPELLSE----AQIDYPD--------------  42

Query  479  ERSALGTVTRKNNSFTFDRVFGPSTQNAEVFEEISQLVQSALDGYNVCIFCYGQTGSGKT  538
            E S+ G +  KN SF+FDRVF P ++  +VF+EISQLVQS LDGYNVCIF YGQTGSG  
Sbjct  43   ETSSDGKIGSKNKSFSFDRVFPPESEQEDVFQEISQLVQSCLDGYNVCIFAYGQTGSGSN  102

Query  539  YTMSSLDGMIPRAVHQIYQTAQSLEEKGWRYTMEGNFVEVYNENLNDLL  587
                  DGMIPRA  QI++   SL +KGW+YT+E  FVE+YNE+  DLL
Sbjct  103  ------DGMIPRAREQIFRFISSL-KKGWKYTIELQFVEIYNESSQDLL  144



Lambda      K        H        a         alpha
   0.312    0.125    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1008420336


Query= TCONS_00018475

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459720 pfam00225, Kinesin, Kinesin motor domain                   405     9e-140
CDD:465274 pfam16796, Microtub_bd, Microtubule binding. This moto...  226     7e-73 


>CDD:459720 pfam00225, Kinesin, Kinesin motor domain.  
Length=326

 Score = 405 bits (1042),  Expect = 9e-140, Method: Composition-based stats.
 Identities = 148/337 (44%), Positives = 201/337 (60%), Gaps = 19/337 (6%)

Query  191  RVRPSLESEVAETAQIEYPDQSDECKEICLLGPEERSALGTVTRKNNSFTFDRVFGPSTQ  250
            RVRP  E E            S       +      S+  T   +  +FTFD+VF P   
Sbjct  1    RVRPLNEREKER-------GSSVIVSVESVDSETVESSHLTNKNRTKTFTFDKVFDPEAT  53

Query  251  NAEVFEE-ISQLVQSALDGYNVCIFCYGQTGSGKTYTMSSLD---GMIPRAVHQIYQTAQ  306
              +V+EE    LV+S L+GYNV IF YGQTGSGKTYTM   D   G+IPRA+  ++   Q
Sbjct  54   QEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQ  113

Query  307  SLEEKGWRYTMEGNFVEVYNENLNDLLGKAEELDKKKHEIRHDMQRCKTTITDITTVRLE  366
              +E+   ++++ +++E+YNE + DLL  + + +K+K  IR D ++    +  +T V + 
Sbjct  114  KTKER-SEFSVKVSYLEIYNEKIRDLLSPSNK-NKRKLRIREDPKK-GVYVKGLTEVEVS  170

Query  367  SPEMVESMLKRAAANRSVAATKANERSSRSHSVFILKLLGENHITGERSE---GTLNLVD  423
            S E V  +L+    NR+VAATK NE SSRSH++F + +   N  TG       G LNLVD
Sbjct  171  SAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGEESVKTGKLNLVD  230

Query  424  LAGSERLSHSQ-ATGERLKETQNINRSLSCLGDVIAALGQGKEGGHIPYRNSKLTYLLQF  482
            LAGSER S +  A G+RLKE  NIN+SLS LG+VI+AL   K   HIPYR+SKLT LLQ 
Sbjct  231  LAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKSK-HIPYRDSKLTRLLQD  289

Query  483  SLGGNSKTLMFVMCSPLQAHLAETLTSLKFATKVHNT  519
            SLGGNSKTLM    SP  ++  ETL++L+FA++  N 
Sbjct  290  SLGGNSKTLMIANISPSSSNYEETLSTLRFASRAKNI  326


>CDD:465274 pfam16796, Microtub_bd, Microtubule binding.  This motor homology 
domain binds microtubules and lacks an ATP-binding site.
Length=144

 Score = 226 bits (579),  Expect = 7e-73, Method: Composition-based stats.
 Identities = 98/169 (58%), Positives = 115/169 (68%), Gaps = 25/169 (15%)

Query  165  LRKEETLRRKLHNQVQELKGNIRVFCRVRPSLESEVAETAQIEYPDQSDECKEICLLGPE  224
            L +EETLRRKL N +QELKGNIRVF RVRP L SE    AQI+YPD              
Sbjct  1    LEEEETLRRKLENSIQELKGNIRVFARVRPELLSE----AQIDYPD--------------  42

Query  225  ERSALGTVTRKNNSFTFDRVFGPSTQNAEVFEEISQLVQSALDGYNVCIFCYGQTGSGKT  284
            E S+ G +  KN SF+FDRVF P ++  +VF+EISQLVQS LDGYNVCIF YGQTGSG  
Sbjct  43   ETSSDGKIGSKNKSFSFDRVFPPESEQEDVFQEISQLVQSCLDGYNVCIFAYGQTGSGSN  102

Query  285  YTMSSLDGMIPRAVHQIYQTAQSLEEKGWRYTMEGNFVEVYNENLNDLL  333
                  DGMIPRA  QI++   SL +KGW+YT+E  FVE+YNE+  DLL
Sbjct  103  ------DGMIPRAREQIFRFISSL-KKGWKYTIELQFVEIYNESSQDLL  144



Lambda      K        H        a         alpha
   0.314    0.128    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0593    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00018477

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00018478

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00018479

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428146 pfam04828, GFA, Glutathione-dependent formaldehyde-act...  81.6    1e-21


>CDD:428146 pfam04828, GFA, Glutathione-dependent formaldehyde-activating 
enzyme.  The GFA enzyme catalyzes the first step in the detoxification 
of formaldehyde. This domain has a beta-tent fold.
Length=93

 Score = 81.6 bits (202),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query  63   LCHCSNCKKAFGTNYGLTAKIPKDALRLTAGKPKEHVGDNGSGSLLHREFCDNCGSFILE  122
            LCHC +C++  G+ +   A +PK+ALRLT+G+ KE+     SG+ + R FC NCG+ +  
Sbjct  2    LCHCRDCQRRSGSAFAANAVVPKEALRLTSGELKEYTDTGDSGNTVTRYFCPNCGTPLY-  60

Query  123  YGVAVKDQARYICVGTLDDPEALPPKGEF  151
                       + VGTLDDP+ L P  E 
Sbjct  61   SESTAAPGVIIVRVGTLDDPDQLKPVAEI  89



Lambda      K        H        a         alpha
   0.319    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00012748

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00018480

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00012749

Length=143
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428146 pfam04828, GFA, Glutathione-dependent formaldehyde-act...  75.9    2e-19


>CDD:428146 pfam04828, GFA, Glutathione-dependent formaldehyde-activating 
enzyme.  The GFA enzyme catalyzes the first step in the detoxification 
of formaldehyde. This domain has a beta-tent fold.
Length=93

 Score = 75.9 bits (187),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query  39   QKAFGTNYGLTAKIPKDALRLTAGKPKEHVGDNGSGSLLHREFCDNCGSFILEYGDAVKD  98
            Q+  G+ +   A +PK+ALRLT+G+ KE+     SG+ + R FC NCG+ +  Y ++   
Sbjct  9    QRRSGSAFAANAVVPKEALRLTSGELKEYTDTGDSGNTVTRYFCPNCGTPL--YSESTAA  66

Query  99   QARYIC-VGTLDDPEALPPKGEFFCSS  124
                I  VGTLDDP+ L P  E +  S
Sbjct  67   PGVIIVRVGTLDDPDQLKPVAEIWTKS  93



Lambda      K        H        a         alpha
   0.318    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00012751

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00012752

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396400 pfam01814, Hemerythrin, Hemerythrin HHE cation binding...  59.5    2e-12


>CDD:396400 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain. 
 Iteration of the HHE family found it to be related to Hemerythrin. 
It also demonstrated that what has been described 
as a single domain in fact consists of two cation binding domains. 
Members of this family occur all across nature and are 
involved in a variety of processes. For instance, in Nereis 
diversicolor hemerythrin binds Cadmium so as to protect the 
organism from toxicity. However Hemerythrin is classically 
described as Oxygen-binding through two attached Fe2+ ions. 
And the bacterial NorA is a regulator of response to NO, which 
suggests yet another set-up for its metal ligands. In Staphylococcus 
aureus the iron-sulfur cluster repair protein ScdA 
has been noted to be important when the organism switches 
to living in environments with low oxygen concentrations; 
perhaps this protein acts as an oxygen store or scavenger.
Length=128

 Score = 59.5 bits (144),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query  6    DTIKKDHRELEEYYKII------VSSRDTDEQIRFQNKFTWELARHAIGEELVVYPALEK  59
            + +  +HR L E   ++      +      +     ++   EL  H   EE +++PALE+
Sbjct  4    ELLDAEHRRLRELLALLRALADALGDSHLRKLAELLDELVDELEAHHAAEEELLFPALER  63

Query  60   YLPGGAETADKDREEHQTIKEKLQKFQ---DMHPSDAAFMPILKSMMADLEKHIEEEETI  116
              PGG    +  R+EH  I+E L++ +         AAF  +L+++   L +HI +EE +
Sbjct  64   RSPGGEAPIEVLRKEHDEIRELLEELEALLKGAEPGAAFAELLEALAEWLREHIAKEEEV  123

Query  117  DFVKL  121
             F  L
Sbjct  124  LFPLL  128



Lambda      K        H        a         alpha
   0.315    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00012753

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00012754

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00012755

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.126    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00012756

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00012758

Length=483


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593513872


Query= TCONS_00018481

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00012757

Length=445


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00012759

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00018482

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00012761

Length=652


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.121    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00012760

Length=652


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.121    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00018483

Length=652


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.121    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00018485

Length=652


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.121    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00018484

Length=652


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.121    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00018486

Length=531


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.119    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 666189040


Query= TCONS_00012762

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrola...  252     1e-82


>CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain 
(DUF2235).  This domain, found in various hypothetical bacterial 
proteins, has no known function.
Length=284

 Score = 252 bits (645),  Expect = 1e-82, Method: Composition-based stats.
 Identities = 84/250 (34%), Positives = 113/250 (45%), Gaps = 42/250 (17%)

Query  1    MSWTPKAFDLALATSFDQHVIRGYRFLARRWVPGAKIYLFGFSRGAYTARFLNEMLDYVG  60
             S   K  D A  +  D HV   YRFL R + PG +IYLFGFSRGAYTAR L  M+  VG
Sbjct  60   KSKLDKLLDGAFGSGLDAHVREAYRFLMRNYEPGDEIYLFGFSRGAYTARSLAGMIHKVG  119

Query  61   LLSADNEELIPFVWEAFTQWKFSEGEKPEER--LGAMRSLSVSRETMCRPVGQVHFLGLF  118
            LL+  NEE +PF ++ +   +  +     E         +   R+T  RP   + FLG++
Sbjct  120  LLTRGNEEQVPFAYKLYRDREDRDQPSEPESTEKRKPYYMKAFRKTFSRPDVPIKFLGVW  179

Query  119  DTVNSVAEFNKESSTR-------------PSPKIMRHAVSIDERRIKFQPVLFESKLGTG  165
            DTV S+         R             PS +  RHA+++DERR KF+P L+       
Sbjct  180  DTVGSLGIPEPPWLRRLNRKFPFTDTSLSPSVEHARHALALDERRAKFRPTLW-------  232

Query  166  SPDMKQSVDDWKKGPENIYDTDNDGEFSILEADFKEVYFAGNHGDVGGGWPS--KSWPAS  223
                                 D+         D K+V+F G H DVGGG+         S
Sbjct  233  ------------------ERPDDYPPKPEEGQDLKQVWFPGVHSDVGGGYVDDELGESLS  274

Query  224  QIPLTWMVQE  233
             IPL WM++E
Sbjct  275  DIPLAWMIRE  284



Lambda      K        H        a         alpha
   0.319    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00012763

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00012765

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  77.6    1e-18
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  76.5    2e-18
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  71.6    2e-16
CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  70.1    3e-15


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 77.6 bits (192),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 31/115 (27%), Positives = 52/115 (45%), Gaps = 22/115 (19%)

Query  106  VLEVGCGTGLLTLRVAPHVK-HIVAIDPAEGMIDVLNAKLSDPTAPKNLTPLCHLLTNPE  164
            VL++GCGTG LTL +A      +  +D +  M++    + ++  A  N+  +     +  
Sbjct  1    VLDLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAE--AGLNVEFVQGDAED--  56

Query  165  DPVLPPASATEYTGPGTGARRKYDLILSHLVMHHV--PDLRQFLSTLRGCLKSGG  217
               LP    +            +DL++S  V+HH+  PDL   L  +   LK GG
Sbjct  57   ---LPFPDGS------------FDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 76.5 bits (189),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 33/115 (29%), Positives = 51/115 (44%), Gaps = 21/115 (18%)

Query  107  LEVGCGTGLLTLRVAPHVKHIVAIDPAEGMIDVLNAKLSDPTAPKNLTPLCHLLTNPEDP  166
            L+VGCGTGLLT  +A     +  +D +  M+++   K            L  ++ + ED 
Sbjct  1    LDVGCGTGLLTELLARLGARVTGVDISPEMLELAREKAPRE-------GLTFVVGDAEDL  53

Query  167  VLPPASATEYTGPGTGARRKYDLILSHLVMHHVPDLRQFLSTLRGCLKSGGRVFL  221
              P  S              +DL+LS  V+HHV D  + L  +   LK GG + +
Sbjct  54   PFPDNS--------------FDLVLSSEVLHHVEDPERALREIARVLKPGGILII  94


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 71.6 bits (176),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 47/115 (41%), Gaps = 19/115 (17%)

Query  107  LEVGCGTGLLTLRVAPHVK--HIVAIDPAEGMIDVLNAKLSDPTAPKNLTPLCHLLTNPE  164
            LE+GCGTG L   +   +       +D +   ++    +L+       L  +   L   +
Sbjct  1    LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAAL---GLLNAVRVELFQLD  57

Query  165  DPVLPPASATEYTGPGTGARRKYDLILSHLVMHHVPDLRQFLSTLRGCLKSGGRV  219
               L P S              +D++++  V+HH+ D R  L  +R  LK GG +
Sbjct  58   LGELDPGS--------------FDVVVASNVLHHLADPRAVLRNIRRLLKPGGVL  98


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 70.1 bits (172),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 42/194 (22%), Positives = 68/194 (35%), Gaps = 36/194 (19%)

Query  77   FVHEATRLAYETLHPLITTLSNGRDQTLDVLEVGCGTGLLTLRVAPHVKHIVAIDPAEGM  136
            + H+  RL  + L  L+  L +       VL+ GCGTG+    +      +  +DP+   
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGR----VLDFGCGTGIFLRLLRAQGFSVTGVDPSPIA  56

Query  137  IDVLNAKLSDPTAPKNLTPLCHLLTNPEDPVLPPASATEYTGPGTGARRKYDLILSHLVM  196
            I+          A  N+            P                   K+D+I++  V+
Sbjct  57   IER---------ALLNVRFDQFDEQEAAVP-----------------AGKFDVIVAREVL  90

Query  197  HHVPDLRQFLSTLRGCLKSGGRVFLTDFEDFGPQARLFHPKDKLGGVERHG----IPRGW  252
             HVPD    L  +   LK GG + L+         RL    +      R+G         
Sbjct  91   EHVPDPPALLRQIAALLKPGGLLLLSTPLASDEADRLLL--EWPYLRPRNGHISLFSARS  148

Query  253  MEDLMREVGFTEVQ  266
            ++ L+ E GF  V 
Sbjct  149  LKRLLEEAGFEVVS  162



Lambda      K        H        a         alpha
   0.320    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00012764

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  77.6    1e-18
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  76.5    2e-18
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  71.6    2e-16
CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  70.1    3e-15


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 77.6 bits (192),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 31/115 (27%), Positives = 52/115 (45%), Gaps = 22/115 (19%)

Query  106  VLEVGCGTGLLTLRVAPHVK-HIVAIDPAEGMIDVLNAKLSDPTAPKNLTPLCHLLTNPE  164
            VL++GCGTG LTL +A      +  +D +  M++    + ++  A  N+  +     +  
Sbjct  1    VLDLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAE--AGLNVEFVQGDAED--  56

Query  165  DPVLPPASATEYTGPGTGARRKYDLILSHLVMHHV--PDLRQFLSTLRGCLKSGG  217
               LP    +            +DL++S  V+HH+  PDL   L  +   LK GG
Sbjct  57   ---LPFPDGS------------FDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 76.5 bits (189),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 33/115 (29%), Positives = 51/115 (44%), Gaps = 21/115 (18%)

Query  107  LEVGCGTGLLTLRVAPHVKHIVAIDPAEGMIDVLNAKLSDPTAPKNLTPLCHLLTNPEDP  166
            L+VGCGTGLLT  +A     +  +D +  M+++   K            L  ++ + ED 
Sbjct  1    LDVGCGTGLLTELLARLGARVTGVDISPEMLELAREKAPRE-------GLTFVVGDAEDL  53

Query  167  VLPPASATEYTGPGTGARRKYDLILSHLVMHHVPDLRQFLSTLRGCLKSGGRVFL  221
              P  S              +DL+LS  V+HHV D  + L  +   LK GG + +
Sbjct  54   PFPDNS--------------FDLVLSSEVLHHVEDPERALREIARVLKPGGILII  94


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 71.6 bits (176),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 47/115 (41%), Gaps = 19/115 (17%)

Query  107  LEVGCGTGLLTLRVAPHVK--HIVAIDPAEGMIDVLNAKLSDPTAPKNLTPLCHLLTNPE  164
            LE+GCGTG L   +   +       +D +   ++    +L+       L  +   L   +
Sbjct  1    LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAAL---GLLNAVRVELFQLD  57

Query  165  DPVLPPASATEYTGPGTGARRKYDLILSHLVMHHVPDLRQFLSTLRGCLKSGGRV  219
               L P S              +D++++  V+HH+ D R  L  +R  LK GG +
Sbjct  58   LGELDPGS--------------FDVVVASNVLHHLADPRAVLRNIRRLLKPGGVL  98


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 70.1 bits (172),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 42/194 (22%), Positives = 68/194 (35%), Gaps = 36/194 (19%)

Query  77   FVHEATRLAYETLHPLITTLSNGRDQTLDVLEVGCGTGLLTLRVAPHVKHIVAIDPAEGM  136
            + H+  RL  + L  L+  L +       VL+ GCGTG+    +      +  +DP+   
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGR----VLDFGCGTGIFLRLLRAQGFSVTGVDPSPIA  56

Query  137  IDVLNAKLSDPTAPKNLTPLCHLLTNPEDPVLPPASATEYTGPGTGARRKYDLILSHLVM  196
            I+          A  N+            P                   K+D+I++  V+
Sbjct  57   IER---------ALLNVRFDQFDEQEAAVP-----------------AGKFDVIVAREVL  90

Query  197  HHVPDLRQFLSTLRGCLKSGGRVFLTDFEDFGPQARLFHPKDKLGGVERHG----IPRGW  252
             HVPD    L  +   LK GG + L+         RL    +      R+G         
Sbjct  91   EHVPDPPALLRQIAALLKPGGLLLLSTPLASDEADRLLL--EWPYLRPRNGHISLFSARS  148

Query  253  MEDLMREVGFTEVQ  266
            ++ L+ E GF  V 
Sbjct  149  LKRLLEEAGFEVVS  162



Lambda      K        H        a         alpha
   0.320    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00012766

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00018487

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrola...  252     1e-82


>CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain 
(DUF2235).  This domain, found in various hypothetical bacterial 
proteins, has no known function.
Length=284

 Score = 252 bits (645),  Expect = 1e-82, Method: Composition-based stats.
 Identities = 84/250 (34%), Positives = 113/250 (45%), Gaps = 42/250 (17%)

Query  1    MSWTPKAFDLALATSFDQHVIRGYRFLARRWVPGAKIYLFGFSRGAYTARFLNEMLDYVG  60
             S   K  D A  +  D HV   YRFL R + PG +IYLFGFSRGAYTAR L  M+  VG
Sbjct  60   KSKLDKLLDGAFGSGLDAHVREAYRFLMRNYEPGDEIYLFGFSRGAYTARSLAGMIHKVG  119

Query  61   LLSADNEELIPFVWEAFTQWKFSEGEKPEER--LGAMRSLSVSRETMCRPVGQVHFLGLF  118
            LL+  NEE +PF ++ +   +  +     E         +   R+T  RP   + FLG++
Sbjct  120  LLTRGNEEQVPFAYKLYRDREDRDQPSEPESTEKRKPYYMKAFRKTFSRPDVPIKFLGVW  179

Query  119  DTVNSVAEFNKESSTR-------------PSPKIMRHAVSIDERRIKFQPVLFESKLGTG  165
            DTV S+         R             PS +  RHA+++DERR KF+P L+       
Sbjct  180  DTVGSLGIPEPPWLRRLNRKFPFTDTSLSPSVEHARHALALDERRAKFRPTLW-------  232

Query  166  SPDMKQSVDDWKKGPENIYDTDNDGEFSILEADFKEVYFAGNHGDVGGGWPS--KSWPAS  223
                                 D+         D K+V+F G H DVGGG+         S
Sbjct  233  ------------------ERPDDYPPKPEEGQDLKQVWFPGVHSDVGGGYVDDELGESLS  274

Query  224  QIPLTWMVQE  233
             IPL WM++E
Sbjct  275  DIPLAWMIRE  284



Lambda      K        H        a         alpha
   0.319    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00012767

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  77.6    1e-18
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  76.5    2e-18
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  71.6    2e-16
CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  70.1    3e-15


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 77.6 bits (192),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 31/115 (27%), Positives = 52/115 (45%), Gaps = 22/115 (19%)

Query  106  VLEVGCGTGLLTLRVAPHVK-HIVAIDPAEGMIDVLNAKLSDPTAPKNLTPLCHLLTNPE  164
            VL++GCGTG LTL +A      +  +D +  M++    + ++  A  N+  +     +  
Sbjct  1    VLDLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAE--AGLNVEFVQGDAED--  56

Query  165  DPVLPPASATEYTGPGTGARRKYDLILSHLVMHHV--PDLRQFLSTLRGCLKSGG  217
               LP    +            +DL++S  V+HH+  PDL   L  +   LK GG
Sbjct  57   ---LPFPDGS------------FDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 76.5 bits (189),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 33/115 (29%), Positives = 51/115 (44%), Gaps = 21/115 (18%)

Query  107  LEVGCGTGLLTLRVAPHVKHIVAIDPAEGMIDVLNAKLSDPTAPKNLTPLCHLLTNPEDP  166
            L+VGCGTGLLT  +A     +  +D +  M+++   K            L  ++ + ED 
Sbjct  1    LDVGCGTGLLTELLARLGARVTGVDISPEMLELAREKAPRE-------GLTFVVGDAEDL  53

Query  167  VLPPASATEYTGPGTGARRKYDLILSHLVMHHVPDLRQFLSTLRGCLKSGGRVFL  221
              P  S              +DL+LS  V+HHV D  + L  +   LK GG + +
Sbjct  54   PFPDNS--------------FDLVLSSEVLHHVEDPERALREIARVLKPGGILII  94


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 71.6 bits (176),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 47/115 (41%), Gaps = 19/115 (17%)

Query  107  LEVGCGTGLLTLRVAPHVK--HIVAIDPAEGMIDVLNAKLSDPTAPKNLTPLCHLLTNPE  164
            LE+GCGTG L   +   +       +D +   ++    +L+       L  +   L   +
Sbjct  1    LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAAL---GLLNAVRVELFQLD  57

Query  165  DPVLPPASATEYTGPGTGARRKYDLILSHLVMHHVPDLRQFLSTLRGCLKSGGRV  219
               L P S              +D++++  V+HH+ D R  L  +R  LK GG +
Sbjct  58   LGELDPGS--------------FDVVVASNVLHHLADPRAVLRNIRRLLKPGGVL  98


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 70.1 bits (172),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 42/194 (22%), Positives = 68/194 (35%), Gaps = 36/194 (19%)

Query  77   FVHEATRLAYETLHPLITTLSNGRDQTLDVLEVGCGTGLLTLRVAPHVKHIVAIDPAEGM  136
            + H+  RL  + L  L+  L +       VL+ GCGTG+    +      +  +DP+   
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGR----VLDFGCGTGIFLRLLRAQGFSVTGVDPSPIA  56

Query  137  IDVLNAKLSDPTAPKNLTPLCHLLTNPEDPVLPPASATEYTGPGTGARRKYDLILSHLVM  196
            I+          A  N+            P                   K+D+I++  V+
Sbjct  57   IER---------ALLNVRFDQFDEQEAAVP-----------------AGKFDVIVAREVL  90

Query  197  HHVPDLRQFLSTLRGCLKSGGRVFLTDFEDFGPQARLFHPKDKLGGVERHG----IPRGW  252
             HVPD    L  +   LK GG + L+         RL    +      R+G         
Sbjct  91   EHVPDPPALLRQIAALLKPGGLLLLSTPLASDEADRLLL--EWPYLRPRNGHISLFSARS  148

Query  253  MEDLMREVGFTEVQ  266
            ++ L+ E GF  V 
Sbjct  149  LKRLLEEAGFEVVS  162



Lambda      K        H        a         alpha
   0.320    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00012768

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrola...  252     1e-82


>CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain 
(DUF2235).  This domain, found in various hypothetical bacterial 
proteins, has no known function.
Length=284

 Score = 252 bits (645),  Expect = 1e-82, Method: Composition-based stats.
 Identities = 84/250 (34%), Positives = 113/250 (45%), Gaps = 42/250 (17%)

Query  1    MSWTPKAFDLALATSFDQHVIRGYRFLARRWVPGAKIYLFGFSRGAYTARFLNEMLDYVG  60
             S   K  D A  +  D HV   YRFL R + PG +IYLFGFSRGAYTAR L  M+  VG
Sbjct  60   KSKLDKLLDGAFGSGLDAHVREAYRFLMRNYEPGDEIYLFGFSRGAYTARSLAGMIHKVG  119

Query  61   LLSADNEELIPFVWEAFTQWKFSEGEKPEER--LGAMRSLSVSRETMCRPVGQVHFLGLF  118
            LL+  NEE +PF ++ +   +  +     E         +   R+T  RP   + FLG++
Sbjct  120  LLTRGNEEQVPFAYKLYRDREDRDQPSEPESTEKRKPYYMKAFRKTFSRPDVPIKFLGVW  179

Query  119  DTVNSVAEFNKESSTR-------------PSPKIMRHAVSIDERRIKFQPVLFESKLGTG  165
            DTV S+         R             PS +  RHA+++DERR KF+P L+       
Sbjct  180  DTVGSLGIPEPPWLRRLNRKFPFTDTSLSPSVEHARHALALDERRAKFRPTLW-------  232

Query  166  SPDMKQSVDDWKKGPENIYDTDNDGEFSILEADFKEVYFAGNHGDVGGGWPS--KSWPAS  223
                                 D+         D K+V+F G H DVGGG+         S
Sbjct  233  ------------------ERPDDYPPKPEEGQDLKQVWFPGVHSDVGGGYVDDELGESLS  274

Query  224  QIPLTWMVQE  233
             IPL WM++E
Sbjct  275  DIPLAWMIRE  284



Lambda      K        H        a         alpha
   0.319    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0772    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00012769

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrola...  321     1e-108


>CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain 
(DUF2235).  This domain, found in various hypothetical bacterial 
proteins, has no known function.
Length=284

 Score = 321 bits (825),  Expect = 1e-108, Method: Composition-based stats.
 Identities = 109/316 (34%), Positives = 148/316 (47%), Gaps = 52/316 (16%)

Query  15   RELVLCFDGTGNTFRADGGESNILKIFRMLDRTKANR---FCYYQPGIGSDITPGSVAHA  71
            + LVLC DGT N F  D   SN+L+++R LDR+  +      YYQPG+G+          
Sbjct  1    KRLVLCCDGTWNNFDGDDPPSNVLRLYRALDRSDPDGGPQIVYYQPGVGTGTY-------  53

Query  72   VLRPRGMSWTPKAFDLALATSFDQHVIRGYRFLARRWVPGAKIYLFGFSRGAYTARFLNE  131
            V+  R  S   K  D A  +  D HV   YRFL R + PG +IYLFGFSRGAYTAR L  
Sbjct  54   VILTRLKSKLDKLLDGAFGSGLDAHVREAYRFLMRNYEPGDEIYLFGFSRGAYTARSLAG  113

Query  132  MLDYVGLLSADNEELIPFVWEAFTQWKFSEGEKPEER--LGAMRSLSVSRETMCRPVGQV  189
            M+  VGLL+  NEE +PF ++ +   +  +     E         +   R+T  RP   +
Sbjct  114  MIHKVGLLTRGNEEQVPFAYKLYRDREDRDQPSEPESTEKRKPYYMKAFRKTFSRPDVPI  173

Query  190  HFLGLFDTVNSVAEFNKESSTR-------------PSPKIMRHAVSIDERRIKFQPVLFE  236
             FLG++DTV S+         R             PS +  RHA+++DERR KF+P L+ 
Sbjct  174  KFLGVWDTVGSLGIPEPPWLRRLNRKFPFTDTSLSPSVEHARHALALDERRAKFRPTLW-  232

Query  237  SKLGTGSPDMKQSVDDWKKGPENIYDTDNDGEFSILEADFKEVYFAGNHGDVGGGWPS--  294
                                       D+         D K+V+F G H DVGGG+    
Sbjct  233  ------------------------ERPDDYPPKPEEGQDLKQVWFPGVHSDVGGGYVDDE  268

Query  295  KSWPASQIPLTWMVQE  310
                 S IPL WM++E
Sbjct  269  LGESLSDIPLAWMIRE  284



Lambda      K        H        a         alpha
   0.320    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00012770

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrola...  306     6e-103


>CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain 
(DUF2235).  This domain, found in various hypothetical bacterial 
proteins, has no known function.
Length=284

 Score = 306 bits (786),  Expect = 6e-103, Method: Composition-based stats.
 Identities = 105/316 (33%), Positives = 144/316 (46%), Gaps = 57/316 (18%)

Query  15   RELVLCFDGTGNTFRADGGESNILKIFRMLDRTKANR--------SGIGSDITPGSVAHA  66
            + LVLC DGT N F  D   SN+L+++R LDR+  +          G+G+          
Sbjct  1    KRLVLCCDGTWNNFDGDDPPSNVLRLYRALDRSDPDGGPQIVYYQPGVGTGTY-------  53

Query  67   VLRPRGMSWTPKAFDLALATSFDQHVIRGYRFLARRWVPGAKIYLFGFSRGAYTARFLNE  126
            V+  R  S   K  D A  +  D HV   YRFL R + PG +IYLFGFSRGAYTAR L  
Sbjct  54   VILTRLKSKLDKLLDGAFGSGLDAHVREAYRFLMRNYEPGDEIYLFGFSRGAYTARSLAG  113

Query  127  MLDYVGLLSADNEELIPFVWEAFTQWKFSEGEKPEER--LGAMRSLSVSRETMCRPVGQV  184
            M+  VGLL+  NEE +PF ++ +   +  +     E         +   R+T  RP   +
Sbjct  114  MIHKVGLLTRGNEEQVPFAYKLYRDREDRDQPSEPESTEKRKPYYMKAFRKTFSRPDVPI  173

Query  185  HFLGLFDTVNSVAEFNKESSTR-------------PSPKIMRHAVSIDERRIKFQPVLFE  231
             FLG++DTV S+         R             PS +  RHA+++DERR KF+P L+ 
Sbjct  174  KFLGVWDTVGSLGIPEPPWLRRLNRKFPFTDTSLSPSVEHARHALALDERRAKFRPTLW-  232

Query  232  SKLGTGSPDMKQSVDDWKKGPENIYDTDNDGEFSILEADFKEVYFAGNHGDVGGGWPS--  289
                                       D+         D K+V+F G H DVGGG+    
Sbjct  233  ------------------------ERPDDYPPKPEEGQDLKQVWFPGVHSDVGGGYVDDE  268

Query  290  KSWPASQIPLTWMVQE  305
                 S IPL WM++E
Sbjct  269  LGESLSDIPLAWMIRE  284



Lambda      K        H        a         alpha
   0.319    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00012771

Length=580
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460788 pfam03055, RPE65, Retinal pigment epithelial membrane ...  369     2e-123


>CDD:460788 pfam03055, RPE65, Retinal pigment epithelial membrane protein. 
 This family represents a retinal pigment epithelial membrane 
receptor which is abundantly expressed in retinal pigment 
epithelium, and binds plasma retinal binding protein. The 
family also includes the sequence related neoxanthin cleavage 
enzyme in plants and lignostilbene-alpha,beta-dioxygenase 
in bacteria.
Length=449

 Score = 369 bits (949),  Expect = 2e-123, Method: Composition-based stats.
 Identities = 159/527 (30%), Positives = 222/527 (42%), Gaps = 84/527 (16%)

Query  50   GFNANYEERQPVELSLTGHIPDYAAGVLYRTGPGKYTVDTENGDTFKISHWFDGFNQTHR  109
                  E  +P+E+ + G IP +  G LYR GPG           F+  HWFDG    H 
Sbjct  1    FAPVREEGPEPLEV-IEGEIPAWLDGTLYRNGPGPLF------GPFRYYHWFDGDGMVHA  53

Query  110  FQIYAPDESHASTRVFYNSRF-STDLLIEEVRKTGSLEKLSFGQKRDPCRTVFHKVQTSY  168
            F+           RV Y +R+  TD    E    G+L    FG    P         T  
Sbjct  54   FRF-------KDGRVTYRNRYVRTDRYKAERAAGGAL----FGGYGGP--------ATGG  94

Query  169  APENDPSYHNIGVTLSVNMPGLGHETGDRARNASGIKNLYAKTDASHYKQIDPETLEPIG  228
                    +N    +      + H  G R         L A T+A    ++DPETLE +G
Sbjct  95   PAVRGKVKNNANTNV------VYH--GGR---------LLALTEAGLPYELDPETLETLG  137

Query  229  LAAQKDLHPELTGPLSAAHARSDPVTGNVYNFNLAFGPEGSIYRIFCVSASTGTTSILAQ  288
                 D   +L    +A H + DP TG +YNF  + G     Y +F      G  +    
Sbjct  138  RD---DFDGQLGKTFTA-HPKVDPETGELYNFGYSAGGPPLTYYVFD---PDGKLTREVW  190

Query  289  FP-GTPAYLHSLLITDDYVILCVWNSHVNPTKLENSFVEAIQPFDASKPATWYVVDRKGS  347
             P   PAY+H   IT++YV+        +  +   S  +A++ +D  KP  + V+ R+G 
Sbjct  191  IPLPGPAYIHDFAITENYVVFVEQPLVFDLEERLKSGGDALE-WDPEKPTRFGVIPRRGK  249

Query  348  RGLLATYKSRPFFCFHTINAWQEPSADDPKQTDIVAELVTFDDLTIMKKAYYENMLSSSP  407
                  +++ PFF FHT NA++E         ++V +L  +DD                 
Sbjct  250  EV--RWFETPPFFVFHTANAYEEE------GGEVVVDLCRYDD----------------D  285

Query  408  SAKTFVQGKRDGCRSALTSFRLARIPSAPTSEVQEASINWTACQGYAPELPTMNPRYVTQ  467
                     +D      +  R  R+        +E      A      E P +NPRYV +
Sbjct  286  VFDPLYLDAKDFDPLPPSRLRRYRLDLKTGGVTRE---TPEALSDRPCEFPRINPRYVGR  342

Query  468  KHRYTYAVTDCGESTF--FDGIMKYDSVAKETIVWKQH-GHSPGEAIFVANPAGADEDDG  524
            K+RY Y     G S    FDG++K D    E  V+    G  PGE IFV  P  A+EDDG
Sbjct  343  KYRYVYGAAARGPSDNALFDGLVKVDLETGEEQVFSFGPGWYPGEPIFVPRPGDAEEDDG  402

Query  525  VLLSVVLDGKTGKSYLLCLDARDMSE-LGRAHLNGPVGFGFHGQYVP  570
             LLSVV DG TG+S LL LDA+D+ E + RA L   V +GFHG +VP
Sbjct  403  WLLSVVYDGDTGRSELLVLDAKDLEEGVARAELPHRVPYGFHGTWVP  449



Lambda      K        H        a         alpha
   0.317    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 729280864


Query= TCONS_00018489

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395860 pfam01083, Cutinase, Cutinase                              154     3e-46


>CDD:395860 pfam01083, Cutinase, Cutinase.  
Length=173

 Score = 154 bits (390),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 101/171 (59%), Gaps = 10/171 (6%)

Query  207  ACQPLTFIFARGTSELGNMGSVVGPPVATKLRSLLNNKVV-VQGVDYPASVEGNALLGAA  265
            +C  +  IFARGT+E G +GSV GP V + L S   +  V VQGV+YPA +       A+
Sbjct  1    SCPDVHVIFARGTTEPGGLGSV-GPAVVSALESAPGSTSVAVQGVNYPADLGQLYAGSAS  59

Query  266  GGP-TMASMVKQALSQCPDTKVVVGGYSQGAMVVHNAANSLS---QGQIAAAVLFGDPFK  321
             G    A+++  A S+CPDTK+V+GGYSQGA V+ NA   L      ++AA VLFGDP  
Sbjct  60   AGANAAAALINSANSKCPDTKIVLGGYSQGAQVMDNAICGLPAAVADKVAAVVLFGDPSN  119

Query  322  SQAVGKVDKA---NVKEYCAAGDPVCLNGANVIAHLSYGSDAA-EAAQFLV  368
             Q +  +          YC AGDP+C  G N+ AHLSYGSD   +AA F+V
Sbjct  120  GQGLPGISPLPASKTISYCDAGDPICGTGNNLPAHLSYGSDYTTQAAAFVV  170



Lambda      K        H        a         alpha
   0.311    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00018488

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395860 pfam01083, Cutinase, Cutinase                              154     3e-46


>CDD:395860 pfam01083, Cutinase, Cutinase.  
Length=173

 Score = 154 bits (390),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 101/171 (59%), Gaps = 10/171 (6%)

Query  207  ACQPLTFIFARGTSELGNMGSVVGPPVATKLRSLLNNKVV-VQGVDYPASVEGNALLGAA  265
            +C  +  IFARGT+E G +GSV GP V + L S   +  V VQGV+YPA +       A+
Sbjct  1    SCPDVHVIFARGTTEPGGLGSV-GPAVVSALESAPGSTSVAVQGVNYPADLGQLYAGSAS  59

Query  266  GGP-TMASMVKQALSQCPDTKVVVGGYSQGAMVVHNAANSLS---QGQIAAAVLFGDPFK  321
             G    A+++  A S+CPDTK+V+GGYSQGA V+ NA   L      ++AA VLFGDP  
Sbjct  60   AGANAAAALINSANSKCPDTKIVLGGYSQGAQVMDNAICGLPAAVADKVAAVVLFGDPSN  119

Query  322  SQAVGKVDKA---NVKEYCAAGDPVCLNGANVIAHLSYGSDAA-EAAQFLV  368
             Q +  +          YC AGDP+C  G N+ AHLSYGSD   +AA F+V
Sbjct  120  GQGLPGISPLPASKTISYCDAGDPICGTGNNLPAHLSYGSDYTTQAAAFVV  170



Lambda      K        H        a         alpha
   0.311    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00012772

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395860 pfam01083, Cutinase, Cutinase                              154     3e-46


>CDD:395860 pfam01083, Cutinase, Cutinase.  
Length=173

 Score = 154 bits (390),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 101/171 (59%), Gaps = 10/171 (6%)

Query  207  ACQPLTFIFARGTSELGNMGSVVGPPVATKLRSLLNNKVV-VQGVDYPASVEGNALLGAA  265
            +C  +  IFARGT+E G +GSV GP V + L S   +  V VQGV+YPA +       A+
Sbjct  1    SCPDVHVIFARGTTEPGGLGSV-GPAVVSALESAPGSTSVAVQGVNYPADLGQLYAGSAS  59

Query  266  GGP-TMASMVKQALSQCPDTKVVVGGYSQGAMVVHNAANSLS---QGQIAAAVLFGDPFK  321
             G    A+++  A S+CPDTK+V+GGYSQGA V+ NA   L      ++AA VLFGDP  
Sbjct  60   AGANAAAALINSANSKCPDTKIVLGGYSQGAQVMDNAICGLPAAVADKVAAVVLFGDPSN  119

Query  322  SQAVGKVDKA---NVKEYCAAGDPVCLNGANVIAHLSYGSDAA-EAAQFLV  368
             Q +  +          YC AGDP+C  G N+ AHLSYGSD   +AA F+V
Sbjct  120  GQGLPGISPLPASKTISYCDAGDPICGTGNNLPAHLSYGSDYTTQAAAFVV  170



Lambda      K        H        a         alpha
   0.311    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00012773

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  73.5    2e-14


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 73.5 bits (181),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 84/419 (20%), Positives = 143/419 (34%), Gaps = 64/419 (15%)

Query  66   PLQNLSLHAVAKEILQPKYTMFGFEW------HNQRGVEGTGFV-------RALRSRLTA  112
            P+  LS     KE+L  K   F           ++    G G V       R LR  LT 
Sbjct  45   PVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGIVFANGPRWRQLRRFLTP  104

Query  113  HLPILMPELQRIVE--TAIADELVA-----PGSDGFVRCRLFPMIKRTVTKVNCFAFFGE  165
                               A +LV       G  G     +  ++ R    V C   FGE
Sbjct  105  TF--TSFGKLSFEPRVEEEARDLVEKLRKTAGEPG--VIDITDLLFRAALNVICSILFGE  160

Query  166  --ELAQNPEFTAAALEFPQRVILAAEILRITPSFLRRSVANLVTRQ----HYAVRTLFRY  219
                 ++P+F    ++  Q +             L   +             A + +   
Sbjct  161  RFGSLEDPKFLEL-VKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDL  219

Query  220  LKPIVEKRLAARANSPRSLQEDAPMDCMQWLIDTSPRKIPWTPTRMVGEIVA----VWFG  275
            L  ++E+R            + +P D +  L+     +     T    E+ A    ++F 
Sbjct  220  LDKLIEER-----RETLDSAKKSPRDFLDALLLAKEEEDGSKLTDE--ELRATVLELFFA  272

Query  276  SVHQLAMTTTYAIEDLCLHSDYVEPLRAEIQQYLEG---PCRRRVAEMPLLDSFVRESIR  332
                 + T ++A+ +L  H +  E LR EI + +     P    +  MP LD+ ++E++R
Sbjct  273  GTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDDLQNMPYLDAVIKETLR  332

Query  333  CTNSDAITVRRKALTPFMFSDGLEVAEGDWVCIPQRAMMRDRIRYQNPQAFDGFRFARAN  392
                  + + R+     +   G  + +G  V +   A+ RD   + NP+ FD  RF   N
Sbjct  333  LHPVVPLLLPREVTKDTVI-PGYLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDEN  391

Query  393  KQLRAGDVSLDVPENSPLTMTDVSVDWPIWGLGKTACPGRFYAATILKLIMVCILEKWE  451
             + R     L                 P +G G   C G   A   +KL +  +L+ +E
Sbjct  392  GKFRKSFAFL-----------------P-FGAGPRNCLGERLARMEMKLFLATLLQNFE  432



Lambda      K        H        a         alpha
   0.326    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 601084202


Query= TCONS_00012774

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  83.5    6e-18


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 83.5 bits (207),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 77/285 (27%), Positives = 127/285 (45%), Gaps = 34/285 (12%)

Query  114  FGPALDGIDPKLPQTFI-----VFDELSWQVLYQYPEF------LAGKMKSARNAIQRAL  162
            FG   D    +L    +     +    S Q+L  +P           K+K AR  I+  L
Sbjct  162  FGSLEDPKFLEL-VKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDLL  220

Query  163  KKYIQLPQESRQGDAWFTK-------AMENEMRALGISEDDIATMLVTIYWGYGPAILLT  215
             K I+  +E+        +         + E     ++++++   ++ +++  G     T
Sbjct  221  DKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFA-GTD---T  276

Query  216  DSIEASYILHY---GPEHYVDIIRQETLPAFLPDKSIPDLNYLHDNCPHLDAMWNETIRL  272
             S   S+ L+     PE   + +R+E     + DK  P  + L  N P+LDA+  ET+RL
Sbjct  277  TSSTLSWALYELAKHPEVQ-EKLREEIDEV-IGDKRSPTYDDL-QNMPYLDAVIKETLRL  333

Query  273  --SAYSASVRFVTSDTIIGGKILRKGNRLMIPYRQLHFDESIFGVDYPVEEFRHERFMQK  330
                     R VT DT+I G ++ KG  +++    LH D  +F    P EEF  ERF+ +
Sbjct  334  HPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNLYALHRDPEVF--PNP-EEFDPERFLDE  390

Query  331  GRNLTRSDNWRPFGGGTTQCPGRYVAKRFVLLFVAMLLRRFDVEL  375
                 +S  + PFG G   C G  +A+  + LF+A LL+ F+VEL
Sbjct  391  NGKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVEL  435



Lambda      K        H        a         alpha
   0.323    0.140    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00018490

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  71.9    4e-14


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 71.9 bits (177),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 97/249 (39%), Gaps = 33/249 (13%)

Query  158  HYAVRTLFRYLKPIVEKRLAARANSPRSLQEDAPMDCMQWLIDTSPRKIPWTPTRMVGEI  217
              A + +   L  ++E+R            + +P D +  L+     +     T    E+
Sbjct  210  KRARKKIKDLLDKLIEER-----RETLDSAKKSPRDFLDALLLAKEEEDGSKLTDE--EL  262

Query  218  VA----VWFGSVHQLAMTTTYAIEDLCLHSDYVEPLRAEIQQYLEG---PCRRRVAEMPL  270
             A    ++F      + T ++A+ +L  H +  E LR EI + +     P    +  MP 
Sbjct  263  RATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDDLQNMPY  322

Query  271  LDSFVRESIRCTNSDAITVRRKALTPFMFSDGLEVAEGDWVCIPQRAMMRDRIRYQNPQA  330
            LD+ ++E++R      + + R+     +   G  + +G  V +   A+ RD   + NP+ 
Sbjct  323  LDAVIKETLRLHPVVPLLLPREVTKDTVI-PGYLIPKGTLVIVNLYALHRDPEVFPNPEE  381

Query  331  FDGFRFARANKQLRAGDVSLDVPENSPLTMTDVSVDWPIWGLGKTACPGRFYAATILKLI  390
            FD  RF   N + R     L                 P +G G   C G   A   +KL 
Sbjct  382  FDPERFLDENGKFRKSFAFL-----------------P-FGAGPRNCLGERLARMEMKLF  423

Query  391  MVCILEKWE  399
            +  +L+ +E
Sbjct  424  LATLLQNFE  432



Lambda      K        H        a         alpha
   0.324    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00018491

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  83.5    6e-18


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 83.5 bits (207),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 77/285 (27%), Positives = 127/285 (45%), Gaps = 34/285 (12%)

Query  114  FGPALDGIDPKLPQTFI-----VFDELSWQVLYQYPEF------LAGKMKSARNAIQRAL  162
            FG   D    +L    +     +    S Q+L  +P           K+K AR  I+  L
Sbjct  162  FGSLEDPKFLEL-VKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDLL  220

Query  163  KKYIQLPQESRQGDAWFTK-------AMENEMRALGISEDDIATMLVTIYWGYGPAILLT  215
             K I+  +E+        +         + E     ++++++   ++ +++  G     T
Sbjct  221  DKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFA-GTD---T  276

Query  216  DSIEASYILHY---GPEHYVDIIRQETLPAFLPDKSIPDLNYLHDNCPHLDAMWNETIRL  272
             S   S+ L+     PE   + +R+E     + DK  P  + L  N P+LDA+  ET+RL
Sbjct  277  TSSTLSWALYELAKHPEVQ-EKLREEIDEV-IGDKRSPTYDDL-QNMPYLDAVIKETLRL  333

Query  273  --SAYSASVRFVTSDTIIGGKILRKGNRLMIPYRQLHFDESIFGVDYPVEEFRHERFMQK  330
                     R VT DT+I G ++ KG  +++    LH D  +F    P EEF  ERF+ +
Sbjct  334  HPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNLYALHRDPEVF--PNP-EEFDPERFLDE  390

Query  331  GRNLTRSDNWRPFGGGTTQCPGRYVAKRFVLLFVAMLLRRFDVEL  375
                 +S  + PFG G   C G  +A+  + LF+A LL+ F+VEL
Sbjct  391  NGKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVEL  435



Lambda      K        H        a         alpha
   0.323    0.140    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00018492

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  73.9    9e-15


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 73.9 bits (182),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 73/368 (20%), Positives = 128/368 (35%), Gaps = 51/368 (14%)

Query  19   RALRSRLTAHLPILMPELQRIVE--TAIADELVA-----PGSDGFVRCRLFPMIKRTVTK  71
            R LR  LT                    A +LV       G  G     +  ++ R    
Sbjct  96   RQLRRFLTPTF--TSFGKLSFEPRVEEEARDLVEKLRKTAGEPG--VIDITDLLFRAALN  151

Query  72   VNCFAFFGE--ELAQNPEFTAAALEFPQRVILAAEILRITPSFLRRSVANLVTRQ----H  125
            V C   FGE     ++P+F    ++  Q +             L   +            
Sbjct  152  VICSILFGERFGSLEDPKFLEL-VKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLK  210

Query  126  YAVRTLFRYLKPIVEKRLAARANSPRSLQEDAPMDCMQWLIDTSPRKIPWTPTRMVGEIV  185
             A + +   L  ++E+R            + +P D +  L+     +     T    E+ 
Sbjct  211  RARKKIKDLLDKLIEER-----RETLDSAKKSPRDFLDALLLAKEEEDGSKLTDE--ELR  263

Query  186  A----VWFGSVHQLAMTTTYAIEDLCLHSDYVEPLRAEIQQYLEG---PCRRRVAEMPLL  238
            A    ++F      + T ++A+ +L  H +  E LR EI + +     P    +  MP L
Sbjct  264  ATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDDLQNMPYL  323

Query  239  DSFVRESIRCTNSDAITVRRKALTPFMFSDGLEVAEGDWVCIPQRAMMRDRIRYQNPQAF  298
            D+ ++E++R      + + R+     +   G  + +G  V +   A+ RD   + NP+ F
Sbjct  324  DAVIKETLRLHPVVPLLLPREVTKDTVI-PGYLIPKGTLVIVNLYALHRDPEVFPNPEEF  382

Query  299  DGFRFARANKQLRAGDVSLDVPENSPLTMTDVSVDWPIWGLGKTACPGRFYAATILKLIM  358
            D  RF   N + R     L                 P +G G   C G   A   +KL +
Sbjct  383  DPERFLDENGKFRKSFAFL-----------------P-FGAGPRNCLGERLARMEMKLFL  424

Query  359  VCILEKWE  366
              +L+ +E
Sbjct  425  ATLLQNFE  432



Lambda      K        H        a         alpha
   0.325    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00018494

Length=302


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00018493

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00012775

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00018495

Length=354


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00018496

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00012778

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00012776

Length=375


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00012777

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00012779

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00012781

Length=314


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00012780

Length=255


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 277421980


Query= TCONS_00012783

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00012782

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00012784

Length=249


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00012785

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00012790

Length=296


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00012786

Length=374


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00012787

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00012788

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00012789

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00012792

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00012791

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00012793

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  95.8    4e-26
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  78.6    3e-19


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 95.8 bits (239),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 49/142 (35%), Positives = 69/142 (49%), Gaps = 6/142 (4%)

Query  5    KSILITGCSANSIGAALALSLAKRGHHVFATARSPAKIPSPLTTLSN----VTLLQLDVT  60
            K  L+TG S+  IG A+A  LAK G  V    RS  K+ +    L         +Q DVT
Sbjct  1    KVALVTGASS-GIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVT  59

Query  61   SPASVAAAVQAVQDHGHGLDVLVNNAGAGYTVPLLDADLEHAKRVYETNVWGVVRMIQGF  120
              A V A V+   +    LD+LVNNAG     P  +   E  +RV + N+ GV  + +  
Sbjct  60   DRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAV  119

Query  121  ADLLVARR-GRVVNLSSVGAVV  141
               ++    GR+VN+SSV  +V
Sbjct  120  LPAMIKGSGGRIVNISSVAGLV  141


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 78.6 bits (195),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 62/136 (46%), Gaps = 5/136 (4%)

Query  13   SANSIGAALALSLAKRGHHVFATARSPA--KIPSPLTTLSNVTLLQLDVTSPASVAAAVQ  70
            + + IG A+A +LA+ G  V  T  + A  K    L       +L  DVT    V A V 
Sbjct  4    NESGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVA  63

Query  71   AVQDHGHGLDVLVNNAGAG--YTVPLLDADLEHAKRVYETNVWGVVRMIQGFADLLVARR  128
            A  +    LD+LVNNAG       P LD   E   R  + N++ +  + +    L+    
Sbjct  64   AAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM-KEG  122

Query  129  GRVVNLSSVGAVVNTP  144
            G +VNLSS+GA    P
Sbjct  123  GSIVNLSSIGAERVVP  138



Lambda      K        H        a         alpha
   0.318    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00018497

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  123     4e-35
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  90.2    4e-22


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 123 bits (311),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 67/189 (35%), Positives = 93/189 (49%), Gaps = 14/189 (7%)

Query  5    KSILITGCSANSIGAALALSLAKRGHHVFATARSPAKIPSPLTTLSN----VTLLQLDVT  60
            K  L+TG S+  IG A+A  LAK G  V    RS  K+ +    L         +Q DVT
Sbjct  1    KVALVTGASS-GIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVT  59

Query  61   SPASVAAAVQAVQDHGHGLDVLVNNAGAGYTVPLLDADLEHAKRVYETNVWGVVRMIQGF  120
              A V A V+   +    LD+LVNNAG     P  +   E  +RV + N+ GV  + +  
Sbjct  60   DRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAV  119

Query  121  ADLLVAR-RGRVVNLSSVGAVVNTPWIGICFP----SKAAVMQISETLRLELAPLGVGVV  175
               ++    GR+VN+SSV  +V  P+ G        SKAAV+  + +L LELAP G+ V 
Sbjct  120  LPAMIKGSGGRIVNISSVAGLV--PYPG--GSAYSASKAAVIGFTRSLALELAPHGIRVN  175

Query  176  CLMVGTVST  184
             +  G V T
Sbjct  176  AVAPGGVDT  184


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 90.2 bits (225),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 52/164 (32%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query  13   SANSIGAALALSLAKRGHHVFATARSPA--KIPSPLTTLSNVTLLQLDVTSPASVAAAVQ  70
            + + IG A+A +LA+ G  V  T  + A  K    L       +L  DVT    V A V 
Sbjct  4    NESGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVA  63

Query  71   AVQDHGHGLDVLVNNAGAG--YTVPLLDADLEHAKRVYETNVWGVVRMIQGFADLLVARR  128
            A  +    LD+LVNNAG       P LD   E   R  + N++ +  + +    L+    
Sbjct  64   AAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM-KEG  122

Query  129  GRVVNLSSVGAVVNTPWIGICFPSKAAVMQISETLRLELAPLGV  172
            G +VNLSS+GA    P       +KAA+  ++  L +EL P G+
Sbjct  123  GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGI  166



Lambda      K        H        a         alpha
   0.318    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00018498

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  95.8    4e-26
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  78.6    3e-19


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 95.8 bits (239),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 49/142 (35%), Positives = 69/142 (49%), Gaps = 6/142 (4%)

Query  5    KSILITGCSANSIGAALALSLAKRGHHVFATARSPAKIPSPLTTLSN----VTLLQLDVT  60
            K  L+TG S+  IG A+A  LAK G  V    RS  K+ +    L         +Q DVT
Sbjct  1    KVALVTGASS-GIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVT  59

Query  61   SPASVAAAVQAVQDHGHGLDVLVNNAGAGYTVPLLDADLEHAKRVYETNVWGVVRMIQGF  120
              A V A V+   +    LD+LVNNAG     P  +   E  +RV + N+ GV  + +  
Sbjct  60   DRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAV  119

Query  121  ADLLVARR-GRVVNLSSVGAVV  141
               ++    GR+VN+SSV  +V
Sbjct  120  LPAMIKGSGGRIVNISSVAGLV  141


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 78.6 bits (195),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 62/136 (46%), Gaps = 5/136 (4%)

Query  13   SANSIGAALALSLAKRGHHVFATARSPA--KIPSPLTTLSNVTLLQLDVTSPASVAAAVQ  70
            + + IG A+A +LA+ G  V  T  + A  K    L       +L  DVT    V A V 
Sbjct  4    NESGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVA  63

Query  71   AVQDHGHGLDVLVNNAGAG--YTVPLLDADLEHAKRVYETNVWGVVRMIQGFADLLVARR  128
            A  +    LD+LVNNAG       P LD   E   R  + N++ +  + +    L+    
Sbjct  64   AAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM-KEG  122

Query  129  GRVVNLSSVGAVVNTP  144
            G +VNLSS+GA    P
Sbjct  123  GSIVNLSSIGAERVVP  138



Lambda      K        H        a         alpha
   0.318    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00012794

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  135     4e-40
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  97.5    4e-25


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 135 bits (341),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 68/185 (37%), Positives = 94/185 (51%), Gaps = 6/185 (3%)

Query  5    KSILITGCSANSIGAALALSLAKRGHHVFATARSPAKIPSPLTTLSN----VTLLQLDVT  60
            K  L+TG S+  IG A+A  LAK G  V    RS  K+ +    L         +Q DVT
Sbjct  1    KVALVTGASS-GIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVT  59

Query  61   SPASVAAAVQAVQDHGHGLDVLVNNAGAGYTVPLLDADLEHAKRVYETNVWGVVRMIQGF  120
              A V A V+   +    LD+LVNNAG     P  +   E  +RV + N+ GV  + +  
Sbjct  60   DRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAV  119

Query  121  ADLLVAR-RGRVVNLSSVGAVVNTPWIGVYSSSKAAVMQISETLRLELAPLGVGVVCLMV  179
               ++    GR+VN+SSV  +V  P    YS+SKAAV+  + +L LELAP G+ V  +  
Sbjct  120  LPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVAP  179

Query  180  GTVST  184
            G V T
Sbjct  180  GGVDT  184


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 97.5 bits (244),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 78/164 (48%), Gaps = 5/164 (3%)

Query  13   SANSIGAALALSLAKRGHHVFATARSPA--KIPSPLTTLSNVTLLQLDVTSPASVAAAVQ  70
            + + IG A+A +LA+ G  V  T  + A  K    L       +L  DVT    V A V 
Sbjct  4    NESGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVA  63

Query  71   AVQDHGHGLDVLVNNAGAG--YTVPLLDADLEHAKRVYETNVWGVVRMIQGFADLLVARR  128
            A  +    LD+LVNNAG       P LD   E   R  + N++ +  + +    L+    
Sbjct  64   AAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM-KEG  122

Query  129  GRVVNLSSVGAVVNTPWIGVYSSSKAAVMQISETLRLELAPLGV  172
            G +VNLSS+GA    P    Y ++KAA+  ++  L +EL P G+
Sbjct  123  GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGI  166



Lambda      K        H        a         alpha
   0.316    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00012795

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  95.8    4e-26
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  78.6    3e-19


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 95.8 bits (239),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 49/142 (35%), Positives = 69/142 (49%), Gaps = 6/142 (4%)

Query  5    KSILITGCSANSIGAALALSLAKRGHHVFATARSPAKIPSPLTTLSN----VTLLQLDVT  60
            K  L+TG S+  IG A+A  LAK G  V    RS  K+ +    L         +Q DVT
Sbjct  1    KVALVTGASS-GIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVT  59

Query  61   SPASVAAAVQAVQDHGHGLDVLVNNAGAGYTVPLLDADLEHAKRVYETNVWGVVRMIQGF  120
              A V A V+   +    LD+LVNNAG     P  +   E  +RV + N+ GV  + +  
Sbjct  60   DRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAV  119

Query  121  ADLLVARR-GRVVNLSSVGAVV  141
               ++    GR+VN+SSV  +V
Sbjct  120  LPAMIKGSGGRIVNISSVAGLV  141


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 78.6 bits (195),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 62/136 (46%), Gaps = 5/136 (4%)

Query  13   SANSIGAALALSLAKRGHHVFATARSPA--KIPSPLTTLSNVTLLQLDVTSPASVAAAVQ  70
            + + IG A+A +LA+ G  V  T  + A  K    L       +L  DVT    V A V 
Sbjct  4    NESGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVA  63

Query  71   AVQDHGHGLDVLVNNAGAG--YTVPLLDADLEHAKRVYETNVWGVVRMIQGFADLLVARR  128
            A  +    LD+LVNNAG       P LD   E   R  + N++ +  + +    L+    
Sbjct  64   AAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM-KEG  122

Query  129  GRVVNLSSVGAVVNTP  144
            G +VNLSS+GA    P
Sbjct  123  GSIVNLSSIGAERVVP  138



Lambda      K        H        a         alpha
   0.318    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00012796

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  137     2e-40
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  99.0    2e-25


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 137 bits (347),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 68/185 (37%), Positives = 94/185 (51%), Gaps = 6/185 (3%)

Query  5    KSILITGCSANSIGAALALSLAKRGHHVFATARSPAKIPSPLTTLSN----VTLLQLDVT  60
            K  L+TG S+  IG A+A  LAK G  V    RS  K+ +    L         +Q DVT
Sbjct  1    KVALVTGASS-GIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVT  59

Query  61   SPASVAAAVQAVQDHGHGLDVLVNNAGAGYTVPLLDADLEHAKRVYETNVWGVVRMIQGF  120
              A V A V+   +    LD+LVNNAG     P  +   E  +RV + N+ GV  + +  
Sbjct  60   DRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAV  119

Query  121  ADLLVAR-RGRVVNLSSVGAVVNTPWIGVYSSSKAAVMQISETLRLELAPLGVGVVCLMV  179
               ++    GR+VN+SSV  +V  P    YS+SKAAV+  + +L LELAP G+ V  +  
Sbjct  120  LPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVAP  179

Query  180  GTVST  184
            G V T
Sbjct  180  GGVDT  184


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 99.0 bits (248),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 78/164 (48%), Gaps = 5/164 (3%)

Query  13   SANSIGAALALSLAKRGHHVFATARSPA--KIPSPLTTLSNVTLLQLDVTSPASVAAAVQ  70
            + + IG A+A +LA+ G  V  T  + A  K    L       +L  DVT    V A V 
Sbjct  4    NESGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVA  63

Query  71   AVQDHGHGLDVLVNNAGAG--YTVPLLDADLEHAKRVYETNVWGVVRMIQGFADLLVARR  128
            A  +    LD+LVNNAG       P LD   E   R  + N++ +  + +    L+    
Sbjct  64   AAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM-KEG  122

Query  129  GRVVNLSSVGAVVNTPWIGVYSSSKAAVMQISETLRLELAPLGV  172
            G +VNLSS+GA    P    Y ++KAA+  ++  L +EL P G+
Sbjct  123  GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGI  166



Lambda      K        H        a         alpha
   0.317    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00012797

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  137     2e-40
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  99.0    2e-25


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 137 bits (347),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 68/185 (37%), Positives = 94/185 (51%), Gaps = 6/185 (3%)

Query  5    KSILITGCSANSIGAALALSLAKRGHHVFATARSPAKIPSPLTTLSN----VTLLQLDVT  60
            K  L+TG S+  IG A+A  LAK G  V    RS  K+ +    L         +Q DVT
Sbjct  1    KVALVTGASS-GIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVT  59

Query  61   SPASVAAAVQAVQDHGHGLDVLVNNAGAGYTVPLLDADLEHAKRVYETNVWGVVRMIQGF  120
              A V A V+   +    LD+LVNNAG     P  +   E  +RV + N+ GV  + +  
Sbjct  60   DRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAV  119

Query  121  ADLLVAR-RGRVVNLSSVGAVVNTPWIGVYSSSKAAVMQISETLRLELAPLGVGVVCLMV  179
               ++    GR+VN+SSV  +V  P    YS+SKAAV+  + +L LELAP G+ V  +  
Sbjct  120  LPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVAP  179

Query  180  GTVST  184
            G V T
Sbjct  180  GGVDT  184


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 99.0 bits (248),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 78/164 (48%), Gaps = 5/164 (3%)

Query  13   SANSIGAALALSLAKRGHHVFATARSPA--KIPSPLTTLSNVTLLQLDVTSPASVAAAVQ  70
            + + IG A+A +LA+ G  V  T  + A  K    L       +L  DVT    V A V 
Sbjct  4    NESGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVA  63

Query  71   AVQDHGHGLDVLVNNAGAG--YTVPLLDADLEHAKRVYETNVWGVVRMIQGFADLLVARR  128
            A  +    LD+LVNNAG       P LD   E   R  + N++ +  + +    L+    
Sbjct  64   AAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM-KEG  122

Query  129  GRVVNLSSVGAVVNTPWIGVYSSSKAAVMQISETLRLELAPLGV  172
            G +VNLSS+GA    P    Y ++KAA+  ++  L +EL P G+
Sbjct  123  GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGI  166



Lambda      K        H        a         alpha
   0.317    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00012798

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  137     1e-40
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  99.4    2e-25


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 137 bits (348),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 68/185 (37%), Positives = 94/185 (51%), Gaps = 6/185 (3%)

Query  5    KSILITGCSANSIGAALALSLAKRGHHVFATARSPAKIPSPLTTLSN----VTLLQLDVT  60
            K  L+TG S+  IG A+A  LAK G  V    RS  K+ +    L         +Q DVT
Sbjct  1    KVALVTGASS-GIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVT  59

Query  61   SPASVAAAVQAVQDHGHGLDVLVNNAGAGYTVPLLDADLEHAKRVYETNVWGVVRMIQGF  120
              A V A V+   +    LD+LVNNAG     P  +   E  +RV + N+ GV  + +  
Sbjct  60   DRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAV  119

Query  121  ADLLVAR-RGRVVNLSSVGAVVNTPWIGVYSSSKAAVMQISETLRLELAPLGVGVVCLMV  179
               ++    GR+VN+SSV  +V  P    YS+SKAAV+  + +L LELAP G+ V  +  
Sbjct  120  LPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVAP  179

Query  180  GTVST  184
            G V T
Sbjct  180  GGVDT  184


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 99.4 bits (249),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 78/164 (48%), Gaps = 5/164 (3%)

Query  13   SANSIGAALALSLAKRGHHVFATARSPA--KIPSPLTTLSNVTLLQLDVTSPASVAAAVQ  70
            + + IG A+A +LA+ G  V  T  + A  K    L       +L  DVT    V A V 
Sbjct  4    NESGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVA  63

Query  71   AVQDHGHGLDVLVNNAGAG--YTVPLLDADLEHAKRVYETNVWGVVRMIQGFADLLVARR  128
            A  +    LD+LVNNAG       P LD   E   R  + N++ +  + +    L+    
Sbjct  64   AAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM-KEG  122

Query  129  GRVVNLSSVGAVVNTPWIGVYSSSKAAVMQISETLRLELAPLGV  172
            G +VNLSS+GA    P    Y ++KAA+  ++  L +EL P G+
Sbjct  123  GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGI  166



Lambda      K        H        a         alpha
   0.318    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00012799

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00012802

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00012801

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  71.8    1e-15


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 71.8 bits (177),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 58/135 (43%), Gaps = 4/135 (3%)

Query  50   QATSAEDVSKALRVLVPKACKFAVRSGGHGAIAGIANIQDGVTIDLSALNWVIP-SADRS  108
               S E+V+  +R+          R GG   + G A    G+ +DLS LN ++    +  
Sbjct  6    LPESEEEVAAIVRLANENGLPVLPRGGGSS-LLGGAVQTGGIVLDLSRLNGILEIDPEDG  64

Query  109  LVSVGPGQRWGRVYAALDRLGLSVP--GGRDSPVGVGGTTLGGGFGYFATEAGFACDSVV  166
              +V  G   G +  AL   GL +    G   P  VGG       GY + + G   D+V+
Sbjct  65   TATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLTRDNVL  124

Query  167  EFQVVLANGRIVNAT  181
              +VVLA+G +V   
Sbjct  125  GLEVVLADGEVVRLG  139



Lambda      K        H        a         alpha
   0.320    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 587408632


Query= TCONS_00012803

Length=167
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462514 pfam08546, ApbA_C, Ketopantoate reductase PanE/ApbA C ...  112     3e-33


>CDD:462514 pfam08546, ApbA_C, Ketopantoate reductase PanE/ApbA C terminal. 
 This is a family of 2-dehydropantoate 2-reductases also 
known as ketopantoate reductases, EC:1.1.1.169. The reaction 
catalyzed by this enzyme is: (R)-pantoate + NADP(+) <=> 2-dehydropantoate 
+ NADPH. AbpA catalyzes the NADPH reduction of 
ketopantoic acid to pantoic acid in the alternative pyrimidine 
biosynthetic (APB) pathway. ApbA and PanE are allelic. 
ApbA, the ketopantoate reductase enzyme is required for the 
synthesis of thiamine via the APB biosynthetic pathway.
Length=125

 Score = 112 bits (283),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 50/126 (40%), Positives = 72/126 (57%), Gaps = 2/126 (2%)

Query  39   DMQLPRWEKVVWNAAWNSITALTMVDTQTWLTSSADATPLTRRLMGEVIAVGRGCGVDLD  98
            D++L RWEK++ NAA N +TALT       L  S +A  L R LM E +AV +  GV L 
Sbjct  1    DIRLARWEKLLVNAAINPLTALTGCTNGE-LLDSPEARALIRALMREAVAVAQAEGVALS  59

Query  99   KG-LVDRLMDKINALPGIGSSMQVDCRNGKPMEIEVILGVPLRRAKELGIDTPVLETLTC  157
            +  L++ ++  +   P   SSM  D   G+P EI+ I G  +R A++ G+ TP  ETL  
Sbjct  60   EDRLIEYVLAVLRKTPDNKSSMLQDVEAGRPTEIDYINGYVVRLARKHGVPTPTNETLYA  119

Query  158  LLRAVD  163
            LL+A +
Sbjct  120  LLKAKE  125



Lambda      K        H        a         alpha
   0.320    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00012804

Length=62
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462514 pfam08546, ApbA_C, Ketopantoate reductase PanE/ApbA C ...  65.7    2e-16


>CDD:462514 pfam08546, ApbA_C, Ketopantoate reductase PanE/ApbA C terminal. 
 This is a family of 2-dehydropantoate 2-reductases also 
known as ketopantoate reductases, EC:1.1.1.169. The reaction 
catalyzed by this enzyme is: (R)-pantoate + NADP(+) <=> 2-dehydropantoate 
+ NADPH. AbpA catalyzes the NADPH reduction of 
ketopantoic acid to pantoic acid in the alternative pyrimidine 
biosynthetic (APB) pathway. ApbA and PanE are allelic. 
ApbA, the ketopantoate reductase enzyme is required for the 
synthesis of thiamine via the APB biosynthetic pathway.
Length=125

 Score = 65.7 bits (161),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 22/58 (38%), Positives = 32/58 (55%), Gaps = 0/58 (0%)

Query  1    MDKINALPGIGSSMQVDCRNGKPMEIEVILGVPLRRAKELGIDTPVLETLTCLLRAVD  58
            +  +   P   SSM  D   G+P EI+ I G  +R A++ G+ TP  ETL  LL+A +
Sbjct  68   LAVLRKTPDNKSSMLQDVEAGRPTEIDYINGYVVRLARKHGVPTPTNETLYALLKAKE  125



Lambda      K        H        a         alpha
   0.323    0.143    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00012805

Length=167
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462514 pfam08546, ApbA_C, Ketopantoate reductase PanE/ApbA C ...  112     3e-33


>CDD:462514 pfam08546, ApbA_C, Ketopantoate reductase PanE/ApbA C terminal. 
 This is a family of 2-dehydropantoate 2-reductases also 
known as ketopantoate reductases, EC:1.1.1.169. The reaction 
catalyzed by this enzyme is: (R)-pantoate + NADP(+) <=> 2-dehydropantoate 
+ NADPH. AbpA catalyzes the NADPH reduction of 
ketopantoic acid to pantoic acid in the alternative pyrimidine 
biosynthetic (APB) pathway. ApbA and PanE are allelic. 
ApbA, the ketopantoate reductase enzyme is required for the 
synthesis of thiamine via the APB biosynthetic pathway.
Length=125

 Score = 112 bits (283),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 50/126 (40%), Positives = 72/126 (57%), Gaps = 2/126 (2%)

Query  39   DMQLPRWEKVVWNAAWNSITALTMVDTQTWLTSSADATPLTRRLMGEVIAVGRGCGVDLD  98
            D++L RWEK++ NAA N +TALT       L  S +A  L R LM E +AV +  GV L 
Sbjct  1    DIRLARWEKLLVNAAINPLTALTGCTNGE-LLDSPEARALIRALMREAVAVAQAEGVALS  59

Query  99   KG-LVDRLMDKINALPGIGSSMQVDCRNGKPMEIEVILGVPLRRAKELGIDTPVLETLTC  157
            +  L++ ++  +   P   SSM  D   G+P EI+ I G  +R A++ G+ TP  ETL  
Sbjct  60   EDRLIEYVLAVLRKTPDNKSSMLQDVEAGRPTEIDYINGYVVRLARKHGVPTPTNETLYA  119

Query  158  LLRAVD  163
            LL+A +
Sbjct  120  LLKAKE  125



Lambda      K        H        a         alpha
   0.320    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00018499

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00018500

Length=482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397120 pfam02837, Glyco_hydro_2_N, Glycosyl hydrolases family...  66.1    2e-13
CDD:395572 pfam00703, Glyco_hydro_2, Glycosyl hydrolases family 2...  59.0    2e-11


>CDD:397120 pfam02837, Glyco_hydro_2_N, Glycosyl hydrolases family 2, sugar 
binding domain.  This family contains beta-galactosidase, 
beta-mannosidase and beta-glucuronidase activities and has 
a jelly-roll fold. The domain binds the sugar moiety during 
the sugar-hydrolysis reaction.
Length=169

 Score = 66.1 bits (161),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 52/109 (48%), Gaps = 6/109 (6%)

Query  121  SWLSTTFTIPKGWEHQNVLLNFGAVDYEATVFVNGKQAGFNRGGYFSFTLDITQFVSFDG  180
             W   TF IP  W  Q + L F  V +   V+VNG+  G ++GGY  F  D+T +V   G
Sbjct  67   GWYQRTFFIPSKWAGQRIRLRFDGVTHYGEVWVNGQWVGEHQGGYTPFEFDLTPYVI-AG  125

Query  181  TNELLVFVHDPTDSGDYVIPIGKQRLIPAHIFYTPCSGIWQSVWIESAP  229
             N + V V + +D       I  Q     H F+   SGI++ V + + P
Sbjct  126  KNRIAVKVLNWSDG----XYIEDQNGKYFHDFWN-YSGIYRDVSLLTTP  169


>CDD:395572 pfam00703, Glyco_hydro_2, Glycosyl hydrolases family 2.  This 
family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase 
activities.
Length=106

 Score = 59.0 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 41/103 (40%), Gaps = 12/103 (12%)

Query  230  ANYITELDISAGMDGQVNVTAVSASGKSMPVDITVFDGSSDKKVAFHKGTSDQP------  283
             +     D+      +V V     +     V++T+     D         +         
Sbjct  4    EDVFITPDLDDDKTAKVTVEVELENDGDASVEVTLETEIKDADGKTVAAAAKVLVLGAGE  63

Query  284  -FSFKVESPKLWSPDSPTLYNISVKMGA-----DEVKSYTGFR  320
                +V++PKLWSP++P LY ++V++       DEV +  GFR
Sbjct  64   TTELEVKNPKLWSPETPNLYTLTVELDKDGKVIDEVSTRFGFR  106



Lambda      K        H        a         alpha
   0.320    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 591999806


Query= TCONS_00012806

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00012807

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00012810

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395572 pfam00703, Glyco_hydro_2, Glycosyl hydrolases family 2...  57.5    2e-11


>CDD:395572 pfam00703, Glyco_hydro_2, Glycosyl hydrolases family 2.  This 
family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase 
activities.
Length=106

 Score = 57.5 bits (139),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query  2    DGQVNVTAVSASGKSMPVDITVFDGSSDKKVAFHKGTSDQP-------FSFKVESPKLWS  54
              +V V     +     V++T+     D         +             +V++PKLWS
Sbjct  17   TAKVTVEVELENDGDASVEVTLETEIKDADGKTVAAAAKVLVLGAGETTELEVKNPKLWS  76

Query  55   PDSPTLYNISVKMGA-----DEVKSYTGFR  79
            P++P LY ++V++       DEV +  GFR
Sbjct  77   PETPNLYTLTVELDKDGKVIDEVSTRFGFR  106



Lambda      K        H        a         alpha
   0.321    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00018501

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395572 pfam00703, Glyco_hydro_2, Glycosyl hydrolases family 2...  57.5    2e-11


>CDD:395572 pfam00703, Glyco_hydro_2, Glycosyl hydrolases family 2.  This 
family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase 
activities.
Length=106

 Score = 57.5 bits (139),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query  2    DGQVNVTAVSASGKSMPVDITVFDGSSDKKVAFHKGTSDQP-------FSFKVESPKLWS  54
              +V V     +     V++T+     D         +             +V++PKLWS
Sbjct  17   TAKVTVEVELENDGDASVEVTLETEIKDADGKTVAAAAKVLVLGAGETTELEVKNPKLWS  76

Query  55   PDSPTLYNISVKMGA-----DEVKSYTGFR  79
            P++P LY ++V++       DEV +  GFR
Sbjct  77   PETPNLYTLTVELDKDGKVIDEVSTRFGFR  106



Lambda      K        H        a         alpha
   0.321    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00012809

Length=380


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00012808

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395572 pfam00703, Glyco_hydro_2, Glycosyl hydrolases family 2...  57.9    1e-11


>CDD:395572 pfam00703, Glyco_hydro_2, Glycosyl hydrolases family 2.  This 
family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase 
activities.
Length=106

 Score = 57.9 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query  2    DGQVNVTAVSASGKSMPVDITVFDGSSDKKVAFHKGTSDQP-------FSFKVESPKLWS  54
              +V V     +     V++T+     D         +             +V++PKLWS
Sbjct  17   TAKVTVEVELENDGDASVEVTLETEIKDADGKTVAAAAKVLVLGAGETTELEVKNPKLWS  76

Query  55   PDSPTLYNISVKMGA-----DEVKSYTGFR  79
            P++P LY ++V++       DEV +  GFR
Sbjct  77   PETPNLYTLTVELDKDGKVIDEVSTRFGFR  106



Lambda      K        H        a         alpha
   0.319    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00012811

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395572 pfam00703, Glyco_hydro_2, Glycosyl hydrolases family 2...  57.5    3e-11


>CDD:395572 pfam00703, Glyco_hydro_2, Glycosyl hydrolases family 2.  This 
family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase 
activities.
Length=106

 Score = 57.5 bits (139),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query  2    DGQVNVTAVSASGKSMPVDITVFDGSSDKKVAFHKGTSDQP-------FSFKVESPKLWS  54
              +V V     +     V++T+     D         +             +V++PKLWS
Sbjct  17   TAKVTVEVELENDGDASVEVTLETEIKDADGKTVAAAAKVLVLGAGETTELEVKNPKLWS  76

Query  55   PDSPTLYNISVKMGA-----DEVKSYTGFR  79
            P++P LY ++V++       DEV +  GFR
Sbjct  77   PETPNLYTLTVELDKDGKVIDEVSTRFGFR  106



Lambda      K        H        a         alpha
   0.319    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00012812

Length=637
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397120 pfam02837, Glyco_hydro_2_N, Glycosyl hydrolases family...  66.1    3e-13
CDD:395572 pfam00703, Glyco_hydro_2, Glycosyl hydrolases family 2...  58.3    4e-11


>CDD:397120 pfam02837, Glyco_hydro_2_N, Glycosyl hydrolases family 2, sugar 
binding domain.  This family contains beta-galactosidase, 
beta-mannosidase and beta-glucuronidase activities and has 
a jelly-roll fold. The domain binds the sugar moiety during 
the sugar-hydrolysis reaction.
Length=169

 Score = 66.1 bits (161),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 52/109 (48%), Gaps = 6/109 (6%)

Query  121  SWLSTTFTIPKGWEHQNVLLNFGAVDYEATVFVNGKQAGFNRGGYFSFTLDITQFVSFDG  180
             W   TF IP  W  Q + L F  V +   V+VNG+  G ++GGY  F  D+T +V   G
Sbjct  67   GWYQRTFFIPSKWAGQRIRLRFDGVTHYGEVWVNGQWVGEHQGGYTPFEFDLTPYVI-AG  125

Query  181  TNELLVFVHDPTDSGDYVIPIGKQRLIPAHIFYTPCSGIWQSVWIESAP  229
             N + V V + +D       I  Q     H F+   SGI++ V + + P
Sbjct  126  KNRIAVKVLNWSDG----XYIEDQNGKYFHDFWN-YSGIYRDVSLLTTP  169


>CDD:395572 pfam00703, Glyco_hydro_2, Glycosyl hydrolases family 2.  This 
family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase 
activities.
Length=106

 Score = 58.3 bits (141),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 41/103 (40%), Gaps = 12/103 (12%)

Query  230  ANYITELDISAGMDGQVNVTAVSASGKSMPVDITVFDGSSDKKVAFHKGTSDQP------  283
             +     D+      +V V     +     V++T+     D         +         
Sbjct  4    EDVFITPDLDDDKTAKVTVEVELENDGDASVEVTLETEIKDADGKTVAAAAKVLVLGAGE  63

Query  284  -FSFKVESPKLWSPDSPTLYNISVKMGA-----DEVKSYTGFR  320
                +V++PKLWSP++P LY ++V++       DEV +  GFR
Sbjct  64   TTELEVKNPKLWSPETPNLYTLTVELDKDGKVIDEVSTRFGFR  106



Lambda      K        H        a         alpha
   0.318    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 802285760


Query= TCONS_00012815

Length=272


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00012816

Length=272


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00012813

Length=272


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00018503

Length=272


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00018502

Length=272


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00012814

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00012817

Length=272


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00018504

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 6...  185     9e-59


>CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 61.  Although 
weak endoglucanase activity has been demonstrated in several 
members of this family, they lack the clustered conserved 
catalytic acidic amino acids present in most glycoside 
hydrolases. Many members of this family lack measurable cellulase 
activity on their own, but enhance the activity of other 
cellulolytic enzymes. They are therefore unlikely to be true 
glycoside hydrolases. The subsrate-binding surface of this 
family is a flat Ig-like fold.
Length=208

 Score = 185 bits (471),  Expect = 9e-59, Method: Composition-based stats.
 Identities = 73/223 (33%), Positives = 97/223 (43%), Gaps = 26/223 (12%)

Query  19   YFFDVLVIDGKETRSNEFVRSNTRPAKYNPTKWKNIRDD---MTPDMPDFRCNKGAFTFA  75
                 LV++G      + V           T      D+        PD RCN       
Sbjct  1    GTVTSLVVNGVTYGGYDPVSDPVIRWTRPNT------DNGPVTDVTSPDIRCNGAGPA--  52

Query  76   GQTGTAEVKAGSKLAMKLAVGATMQHPGPALVYMSKAPS-SAKTYEGDG-DWFKIHEEGV  133
                 A V AGS +  +   G    H GP + Y++K P     T +G G  WFKI E G+
Sbjct  53   --ATAAPVAAGSTVTFQWTQGWPESHKGPVITYLAKCPGGDCATVDGTGLVWFKIDEAGL  110

Query  134  CNKNADFTKDAWCTW----DKDRIEFTIPADLPDGEYLIRPEHIGLHGAHD-GQAEFYYT  188
             +         W T     +      TIP+DL  G YL+R E I LH A   G A+FY  
Sbjct  111  DSGG-----STWATDKLIANNGTWTVTIPSDLAPGNYLLRHEIIALHSAGSVGGAQFYPQ  165

Query  189  CAQVKVVGGGTGTPGPTIKFPGGYKKDDPSFNFSLWN-GYKDY  230
            CAQ++V G G+GTPGP + FPG YK  DP   F++++ G   Y
Sbjct  166  CAQLEVTGSGSGTPGPGVSFPGAYKATDPGILFNIYSPGPTSY  208



Lambda      K        H        a         alpha
   0.315    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00018505

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 6...  185     9e-59


>CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 61.  Although 
weak endoglucanase activity has been demonstrated in several 
members of this family, they lack the clustered conserved 
catalytic acidic amino acids present in most glycoside 
hydrolases. Many members of this family lack measurable cellulase 
activity on their own, but enhance the activity of other 
cellulolytic enzymes. They are therefore unlikely to be true 
glycoside hydrolases. The subsrate-binding surface of this 
family is a flat Ig-like fold.
Length=208

 Score = 185 bits (471),  Expect = 9e-59, Method: Composition-based stats.
 Identities = 73/223 (33%), Positives = 97/223 (43%), Gaps = 26/223 (12%)

Query  19   YFFDVLVIDGKETRSNEFVRSNTRPAKYNPTKWKNIRDD---MTPDMPDFRCNKGAFTFA  75
                 LV++G      + V           T      D+        PD RCN       
Sbjct  1    GTVTSLVVNGVTYGGYDPVSDPVIRWTRPNT------DNGPVTDVTSPDIRCNGAGPA--  52

Query  76   GQTGTAEVKAGSKLAMKLAVGATMQHPGPALVYMSKAPS-SAKTYEGDG-DWFKIHEEGV  133
                 A V AGS +  +   G    H GP + Y++K P     T +G G  WFKI E G+
Sbjct  53   --ATAAPVAAGSTVTFQWTQGWPESHKGPVITYLAKCPGGDCATVDGTGLVWFKIDEAGL  110

Query  134  CNKNADFTKDAWCTW----DKDRIEFTIPADLPDGEYLIRPEHIGLHGAHD-GQAEFYYT  188
             +         W T     +      TIP+DL  G YL+R E I LH A   G A+FY  
Sbjct  111  DSGG-----STWATDKLIANNGTWTVTIPSDLAPGNYLLRHEIIALHSAGSVGGAQFYPQ  165

Query  189  CAQVKVVGGGTGTPGPTIKFPGGYKKDDPSFNFSLWN-GYKDY  230
            CAQ++V G G+GTPGP + FPG YK  DP   F++++ G   Y
Sbjct  166  CAQLEVTGSGSGTPGPGVSFPGAYKATDPGILFNIYSPGPTSY  208



Lambda      K        H        a         alpha
   0.315    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00018506

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 6...  185     9e-59


>CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 61.  Although 
weak endoglucanase activity has been demonstrated in several 
members of this family, they lack the clustered conserved 
catalytic acidic amino acids present in most glycoside 
hydrolases. Many members of this family lack measurable cellulase 
activity on their own, but enhance the activity of other 
cellulolytic enzymes. They are therefore unlikely to be true 
glycoside hydrolases. The subsrate-binding surface of this 
family is a flat Ig-like fold.
Length=208

 Score = 185 bits (471),  Expect = 9e-59, Method: Composition-based stats.
 Identities = 73/223 (33%), Positives = 97/223 (43%), Gaps = 26/223 (12%)

Query  19   YFFDVLVIDGKETRSNEFVRSNTRPAKYNPTKWKNIRDD---MTPDMPDFRCNKGAFTFA  75
                 LV++G      + V           T      D+        PD RCN       
Sbjct  1    GTVTSLVVNGVTYGGYDPVSDPVIRWTRPNT------DNGPVTDVTSPDIRCNGAGPA--  52

Query  76   GQTGTAEVKAGSKLAMKLAVGATMQHPGPALVYMSKAPS-SAKTYEGDG-DWFKIHEEGV  133
                 A V AGS +  +   G    H GP + Y++K P     T +G G  WFKI E G+
Sbjct  53   --ATAAPVAAGSTVTFQWTQGWPESHKGPVITYLAKCPGGDCATVDGTGLVWFKIDEAGL  110

Query  134  CNKNADFTKDAWCTW----DKDRIEFTIPADLPDGEYLIRPEHIGLHGAHD-GQAEFYYT  188
             +         W T     +      TIP+DL  G YL+R E I LH A   G A+FY  
Sbjct  111  DSGG-----STWATDKLIANNGTWTVTIPSDLAPGNYLLRHEIIALHSAGSVGGAQFYPQ  165

Query  189  CAQVKVVGGGTGTPGPTIKFPGGYKKDDPSFNFSLWN-GYKDY  230
            CAQ++V G G+GTPGP + FPG YK  DP   F++++ G   Y
Sbjct  166  CAQLEVTGSGSGTPGPGVSFPGAYKATDPGILFNIYSPGPTSY  208



Lambda      K        H        a         alpha
   0.315    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00012818

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 6...  185     9e-59


>CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 61.  Although 
weak endoglucanase activity has been demonstrated in several 
members of this family, they lack the clustered conserved 
catalytic acidic amino acids present in most glycoside 
hydrolases. Many members of this family lack measurable cellulase 
activity on their own, but enhance the activity of other 
cellulolytic enzymes. They are therefore unlikely to be true 
glycoside hydrolases. The subsrate-binding surface of this 
family is a flat Ig-like fold.
Length=208

 Score = 185 bits (471),  Expect = 9e-59, Method: Composition-based stats.
 Identities = 73/223 (33%), Positives = 97/223 (43%), Gaps = 26/223 (12%)

Query  19   YFFDVLVIDGKETRSNEFVRSNTRPAKYNPTKWKNIRDD---MTPDMPDFRCNKGAFTFA  75
                 LV++G      + V           T      D+        PD RCN       
Sbjct  1    GTVTSLVVNGVTYGGYDPVSDPVIRWTRPNT------DNGPVTDVTSPDIRCNGAGPA--  52

Query  76   GQTGTAEVKAGSKLAMKLAVGATMQHPGPALVYMSKAPS-SAKTYEGDG-DWFKIHEEGV  133
                 A V AGS +  +   G    H GP + Y++K P     T +G G  WFKI E G+
Sbjct  53   --ATAAPVAAGSTVTFQWTQGWPESHKGPVITYLAKCPGGDCATVDGTGLVWFKIDEAGL  110

Query  134  CNKNADFTKDAWCTW----DKDRIEFTIPADLPDGEYLIRPEHIGLHGAHD-GQAEFYYT  188
             +         W T     +      TIP+DL  G YL+R E I LH A   G A+FY  
Sbjct  111  DSGG-----STWATDKLIANNGTWTVTIPSDLAPGNYLLRHEIIALHSAGSVGGAQFYPQ  165

Query  189  CAQVKVVGGGTGTPGPTIKFPGGYKKDDPSFNFSLWN-GYKDY  230
            CAQ++V G G+GTPGP + FPG YK  DP   F++++ G   Y
Sbjct  166  CAQLEVTGSGSGTPGPGVSFPGAYKATDPGILFNIYSPGPTSY  208



Lambda      K        H        a         alpha
   0.315    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00012819

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426316 pfam01545, Cation_efflux, Cation efflux family. Member...  110     9e-29


>CDD:426316 pfam01545, Cation_efflux, Cation efflux family.  Members of this 
family are integral membrane proteins, that are found to 
increase tolerance to divalent metal ions such as cadmium, 
zinc, and cobalt. These proteins are thought to be efflux pumps 
that remove these ions from cells.
Length=189

 Score = 110 bits (278),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 40/123 (33%), Positives = 66/123 (54%), Gaps = 1/123 (1%)

Query  18   AFFLLELIAGYSVHSLALVADSFHMLNDVISLLVGLWAVKVANQETKSKMYTYGWQRAET  77
               L++L AG    SLAL+AD+ H L D+IS L+ L A++++ +    + + +G  R E 
Sbjct  1    LLALVKLAAGLLTGSLALLADAVHSLIDLISSLLALLALRLSRKPP-DERFPFGHGRLEP  59

Query  78   LGALVNGVFLVALCLSIFLEAIQRLVEPQEVKNPKLVCTVGCLGLLSNILGLVLFHDHSH  137
            L ALV G+ L+   + +  E+IQRL+ P E  +P L   +  + LL N+  L+     + 
Sbjct  60   LAALVVGILLLGGGVFLLYESIQRLLSPGEEIDPGLALILALVSLLVNLFLLLYLRRAAR  119

Query  138  GHG  140
               
Sbjct  120  RIR  122



Lambda      K        H        a         alpha
   0.317    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00018507

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426316 pfam01545, Cation_efflux, Cation efflux family. Member...  110     9e-29


>CDD:426316 pfam01545, Cation_efflux, Cation efflux family.  Members of this 
family are integral membrane proteins, that are found to 
increase tolerance to divalent metal ions such as cadmium, 
zinc, and cobalt. These proteins are thought to be efflux pumps 
that remove these ions from cells.
Length=189

 Score = 110 bits (278),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 40/123 (33%), Positives = 66/123 (54%), Gaps = 1/123 (1%)

Query  18   AFFLLELIAGYSVHSLALVADSFHMLNDVISLLVGLWAVKVANQETKSKMYTYGWQRAET  77
               L++L AG    SLAL+AD+ H L D+IS L+ L A++++ +    + + +G  R E 
Sbjct  1    LLALVKLAAGLLTGSLALLADAVHSLIDLISSLLALLALRLSRKPP-DERFPFGHGRLEP  59

Query  78   LGALVNGVFLVALCLSIFLEAIQRLVEPQEVKNPKLVCTVGCLGLLSNILGLVLFHDHSH  137
            L ALV G+ L+   + +  E+IQRL+ P E  +P L   +  + LL N+  L+     + 
Sbjct  60   LAALVVGILLLGGGVFLLYESIQRLLSPGEEIDPGLALILALVSLLVNLFLLLYLRRAAR  119

Query  138  GHG  140
               
Sbjct  120  RIR  122



Lambda      K        H        a         alpha
   0.317    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00012821

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426316 pfam01545, Cation_efflux, Cation efflux family. Member...  103     3e-26


>CDD:426316 pfam01545, Cation_efflux, Cation efflux family.  Members of this 
family are integral membrane proteins, that are found to 
increase tolerance to divalent metal ions such as cadmium, 
zinc, and cobalt. These proteins are thought to be efflux pumps 
that remove these ions from cells.
Length=189

 Score = 103 bits (259),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 37/116 (32%), Positives = 61/116 (53%), Gaps = 1/116 (1%)

Query  3    FIGYSVHSLALVADSFHMLNDVISLLVGLWAVKVANQETKSKMYTYGWQRAETLGALVNG  62
              G    SLAL+AD+ H L D+IS L+ L A++++ +    + + +G  R E L ALV G
Sbjct  8    AAGLLTGSLALLADAVHSLIDLISSLLALLALRLSRKPP-DERFPFGHGRLEPLAALVVG  66

Query  63   VFLVALCLSIFLEAIQRLVEPQEVKNPKLVCTVGCLGLLSNILGLVLFHDHSHGHG  118
            + L+   + +  E+IQRL+ P E  +P L   +  + LL N+  L+     +    
Sbjct  67   ILLLGGGVFLLYESIQRLLSPGEEIDPGLALILALVSLLVNLFLLLYLRRAARRIR  122



Lambda      K        H        a         alpha
   0.316    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0717    0.140     1.90     42.6     43.6 

Effective search space used: 634393654


Query= TCONS_00012823

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426316 pfam01545, Cation_efflux, Cation efflux family. Member...  73.1    2e-15


>CDD:426316 pfam01545, Cation_efflux, Cation efflux family.  Members of this 
family are integral membrane proteins, that are found to 
increase tolerance to divalent metal ions such as cadmium, 
zinc, and cobalt. These proteins are thought to be efflux pumps 
that remove these ions from cells.
Length=189

 Score = 73.1 bits (180),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 40/67 (60%), Gaps = 0/67 (0%)

Query  254  DLNMRGVFLHVMGDALGNIGVIVSALVIWLTDYSWRFYVDPGISLLITVIILASAIPLCK  313
               ++   LH + D L ++GV++SAL+I+L   +     DP  SLLI ++IL +A+ L K
Sbjct  123  SPALKADALHALSDVLASLGVLISALLIYLGPITGGLLADPLASLLIGLLILYTALRLLK  182

Query  314  AASRILL  320
             +  ILL
Sbjct  183  ESLSILL  189


 Score = 64.2 bits (157),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 0/73 (0%)

Query  2    YTYGWQRAETLGALVNGVFLVALCLSIFLEAIQRLVEPQEVKNPKLVCTVGCLGLLSNIL  61
            + +G  R E L ALV G+ L+   + +  E+IQRL+ P E  +P L   +  + LL N+ 
Sbjct  50   FPFGHGRLEPLAALVVGILLLGGGVFLLYESIQRLLSPGEEIDPGLALILALVSLLVNLF  109

Query  62   GLVLFHDHSHGHG  74
             L+     +    
Sbjct  110  LLLYLRRAARRIR  122



Lambda      K        H        a         alpha
   0.315    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00018508

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426316 pfam01545, Cation_efflux, Cation efflux family. Member...  99.7    7e-27


>CDD:426316 pfam01545, Cation_efflux, Cation efflux family.  Members of this 
family are integral membrane proteins, that are found to 
increase tolerance to divalent metal ions such as cadmium, 
zinc, and cobalt. These proteins are thought to be efflux pumps 
that remove these ions from cells.
Length=189

 Score = 99.7 bits (249),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 40/123 (33%), Positives = 66/123 (54%), Gaps = 1/123 (1%)

Query  18   AFFLLELIAGYSVHSLALVADSFHMLNDVISLLVGLWAVKVANQETKSKMYTYGWQRAET  77
               L++L AG    SLAL+AD+ H L D+IS L+ L A++++ +    + + +G  R E 
Sbjct  1    LLALVKLAAGLLTGSLALLADAVHSLIDLISSLLALLALRLSRKPP-DERFPFGHGRLEP  59

Query  78   LGALVNGVFLVALCLSIFLEAIQRLVEPQEVKNPKLVCTVGCLGLLSNILGLVLFHDHSH  137
            L ALV G+ L+   + +  E+IQRL+ P E  +P L   +  + LL N+  L+     + 
Sbjct  60   LAALVVGILLLGGGVFLLYESIQRLLSPGEEIDPGLALILALVSLLVNLFLLLYLRRAAR  119

Query  138  GHG  140
               
Sbjct  120  RIR  122



Lambda      K        H        a         alpha
   0.322    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00012824

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426316 pfam01545, Cation_efflux, Cation efflux family. Member...  108     1e-27


>CDD:426316 pfam01545, Cation_efflux, Cation efflux family.  Members of this 
family are integral membrane proteins, that are found to 
increase tolerance to divalent metal ions such as cadmium, 
zinc, and cobalt. These proteins are thought to be efflux pumps 
that remove these ions from cells.
Length=189

 Score = 108 bits (271),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 39/123 (32%), Positives = 66/123 (54%), Gaps = 1/123 (1%)

Query  18   AFFLLELIAGYSVHSLALVADSFHMVNDVISLLVGLWAVKVANQETKSKMYTYGVQRAET  77
               L++L AG    SLAL+AD+ H + D+IS L+ L A++++ +    + + +G  R E 
Sbjct  1    LLALVKLAAGLLTGSLALLADAVHSLIDLISSLLALLALRLSRKPP-DERFPFGHGRLEP  59

Query  78   LGALVNGVFLVALCLSIFLEAIQRLVEPQEVKNPKLVCTVGCLGLLSNILGLVLFHDHSH  137
            L ALV G+ L+   + +  E+IQRL+ P E  +P L   +  + LL N+  L+     + 
Sbjct  60   LAALVVGILLLGGGVFLLYESIQRLLSPGEEIDPGLALILALVSLLVNLFLLLYLRRAAR  119

Query  138  GHG  140
               
Sbjct  120  RIR  122



Lambda      K        H        a         alpha
   0.316    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00012826

Length=491
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426316 pfam01545, Cation_efflux, Cation efflux family. Member...  80.8    3e-18


>CDD:426316 pfam01545, Cation_efflux, Cation efflux family.  Members of this 
family are integral membrane proteins, that are found to 
increase tolerance to divalent metal ions such as cadmium, 
zinc, and cobalt. These proteins are thought to be efflux pumps 
that remove these ions from cells.
Length=189

 Score = 80.8 bits (200),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 51/99 (52%), Gaps = 1/99 (1%)

Query  1    MLNDVISLLVGLWAVKVANQETKSKMYTYGWQRAETLGALVNGVFLVALCLSIFLEAIQR  60
             L D+IS L+ L A++++ +    + + +G  R E L ALV G+ L+   + +  E+IQR
Sbjct  25   SLIDLISSLLALLALRLSRKPP-DERFPFGHGRLEPLAALVVGILLLGGGVFLLYESIQR  83

Query  61   LVEPQEVKNPKLVCTVGCLGLLSNILGLVLFHDHSHGHG  99
            L+ P E  +P L   +  + LL N+  L+     +    
Sbjct  84   LLSPGEEIDPGLALILALVSLLVNLFLLLYLRRAARRIR  122



Lambda      K        H        a         alpha
   0.315    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 605626400


Query= TCONS_00012825

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426316 pfam01545, Cation_efflux, Cation efflux family. Member...  73.1    2e-15


>CDD:426316 pfam01545, Cation_efflux, Cation efflux family.  Members of this 
family are integral membrane proteins, that are found to 
increase tolerance to divalent metal ions such as cadmium, 
zinc, and cobalt. These proteins are thought to be efflux pumps 
that remove these ions from cells.
Length=189

 Score = 73.1 bits (180),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 40/67 (60%), Gaps = 0/67 (0%)

Query  254  DLNMRGVFLHVMGDALGNIGVIVSALVIWLTDYSWRFYVDPGISLLITVIILASAIPLCK  313
               ++   LH + D L ++GV++SAL+I+L   +     DP  SLLI ++IL +A+ L K
Sbjct  123  SPALKADALHALSDVLASLGVLISALLIYLGPITGGLLADPLASLLIGLLILYTALRLLK  182

Query  314  AASRILL  320
             +  ILL
Sbjct  183  ESLSILL  189



Lambda      K        H        a         alpha
   0.316    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00012827

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426316 pfam01545, Cation_efflux, Cation efflux family. Member...  73.1    5e-16


>CDD:426316 pfam01545, Cation_efflux, Cation efflux family.  Members of this 
family are integral membrane proteins, that are found to 
increase tolerance to divalent metal ions such as cadmium, 
zinc, and cobalt. These proteins are thought to be efflux pumps 
that remove these ions from cells.
Length=189

 Score = 73.1 bits (180),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 40/67 (60%), Gaps = 0/67 (0%)

Query  92   DLNMRGVFLHVMGDALGNIGVIVSALVIWLTDYSWRFYVDPGISLLITVIILASAIPLCK  151
               ++   LH + D L ++GV++SAL+I+L   +     DP  SLLI ++IL +A+ L K
Sbjct  123  SPALKADALHALSDVLASLGVLISALLIYLGPITGGLLADPLASLLIGLLILYTALRLLK  182

Query  152  AASRILL  158
             +  ILL
Sbjct  183  ESLSILL  189



Lambda      K        H        a         alpha
   0.315    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00012830

Length=639


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 805235340


Query= TCONS_00012829

Length=638


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 803760550


Query= TCONS_00012828

Length=515


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00012833

Length=468


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00012831

Length=673


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 855378200


Query= TCONS_00012832

Length=481


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599678264


Query= TCONS_00012834

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         377     3e-127
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            68.6    4e-13 


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 377 bits (971),  Expect = 3e-127, Method: Composition-based stats.
 Identities = 167/452 (37%), Positives = 255/452 (56%), Gaps = 20/452 (4%)

Query  45   YDTGTISGILAMP-YWRKLFSTGYINPDDNYPDITSSQSSMIVSLLSAGTFFGALGAAPV  103
            YDTG I   L +  +++    +  ++         S  S +IVS+ S G F G+L A  +
Sbjct  14   YDTGVIGAFLTLIDFFKNFGLSKSVSSLAA----LSVLSGLIVSIFSVGCFIGSLFAGKL  69

Query  104  ADYFGRRLGMIINSGVFCFGVILQTAAT---AIPLFVAGRFFAGFGVGLLSATVPLYQSE  160
             D FGR+  ++I + +F  G +LQ AA    ++   + GR   G GVG  S   P+Y SE
Sbjct  70   GDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISE  129

Query  161  TAPKWIRGTIVGAYQLAITLGLLIAAIVNNATKDRMDTGCYRIPVAIQFAWAIILVTGML  220
             APK +RG +   YQLAIT G+L+A I         ++  +RIP+ +Q   A++L+ G+L
Sbjct  130  IAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLL  189

Query  221  VLPETPRFLIKKDKHEAAARALSRLRRMDVNDPALIEELSEIQANHEYELSMGTASYLEI  280
             LPE+PR+L++K + E A   L++LR +   D  L E    +    E       AS+ E+
Sbjct  190  FLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSL----EAGQEAEKASWKEL  245

Query  281  LRG-TIGKRLATGCGIQALQQLAGVNFIFYYGTTFFKASGISNPFIITLITNIVNVMSTF  339
                T  +RL  G  +Q  QQL G+N IFYY TT F+  G+S+ F++T+I  +VN + TF
Sbjct  246  FSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTIIVGVVNFVFTF  305

Query  340  PGLYMVEKWGRRPLLMFGAFGMCVSQLIVAIVGTAT--SSDVANKVLIAFVCIYIFFFAC  397
              +++V+++GRRPLL+ GA GM +  +I+ IV       SD A  V I F+ ++I FFA 
Sbjct  306  IAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIVFIALFIAFFAM  365

Query  398  SWGPVAWVVTGELFPLKARAKCLSITTATNWLLNWAIAYATPYMVNSGPGNANLQSKVFF  457
             WGPV WV+  ELFPL  R+K +++ TA NWL N+ I +  P + ++           FF
Sbjct  366  GWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGL-----GYTFF  420

Query  458  IWGGFCFIAFVFVYTCIYETKGLSLEQVDELY  489
            I+ G   +  +FV+  + ETKG +LE++DEL+
Sbjct  421  IFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 68.6 bits (168),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 117/356 (33%), Gaps = 49/356 (14%)

Query  77   ITSSQSSMIVSLLSAGTFFGALGAAPVADYFGRRLGMIINSGVFCFGVILQTAATAIPLF  136
            I+ ++  ++++L S G       A  ++D FGRR  ++I   +F  G++L   A+++ L 
Sbjct  29   ISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLL  88

Query  137  VAGRFFAGFGVGLLSATVPLYQSETAPKWIRGTIVGAYQLAITLGLLIAAIVNNATKDRM  196
            +  R   G G G L        ++  P   RG  +G       LG  +  ++        
Sbjct  89   LVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGL-----  143

Query  197  DTGCYRIPVAIQFAW-AIILVTGMLVLPETPRFLIKKDKHEAAARALSRLRRMDVNDPAL  255
                    +A  F W A  L+  +L L      L+ +   E+     +   R+       
Sbjct  144  --------LASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLS------  189

Query  256  IEELSEIQANHEYELSMGTASYLEILRGTIGKRLATGCGIQALQQLAGVNFIFYYGTTFF  315
                                  L +    + +       +  L        +  Y   + 
Sbjct  190  ----------------------LIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQ  227

Query  316  KASGISNPFIITL--ITNIVNVMSTFPGLYMVEKWGRRPLLMFGAFGMCVSQLIVAIVGT  373
            +  G+S      L  +  ++  +       + ++ GRR  L+     + ++ L + ++  
Sbjct  228  EVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSL  287

Query  374  ATSSDVANKVLIAFVCIYIFFFACSWGPVAWVVTGELFPLKARAKCLSITTATNWL  429
              SS      L+     +   F     P    +  +L P + R     +      L
Sbjct  288  TLSSLWLLLALLLLGFGFGLVF-----PALNALVSDLAPKEERGTASGLYNTAGSL  338



Lambda      K        H        a         alpha
   0.325    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00012835

Length=206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         150     6e-44


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 150 bits (381),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 62/155 (40%), Positives = 94/155 (61%), Gaps = 7/155 (5%)

Query  2    STFPGLYMVEKWGRRPLLMFGAFGMCVSQLIVAIVGTAT--SSDVANKVLIAFVCIYIFF  59
             TF  +++V+++GRRPLL+ GA GM +  +I+ IV       SD A  V I F+ ++I F
Sbjct  303  FTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIVFIALFIAF  362

Query  60   FACSWGPVAWVVTGELFPLKARAKCLSITTATNWLLNWAIAYATPYMVNSGPGNANLQSK  119
            FA  WGPV WV+  ELFPL  R+K +++ TA NWL N+ I +  P + ++          
Sbjct  363  FAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGL-----GY  417

Query  120  VFFIWGGFCFIAFVFVYTCIYETKGLSLEQVDELY  154
             FFI+ G   +  +FV+  + ETKG +LE++DEL+
Sbjct  418  TFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.325    0.137    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00012837

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         209     7e-65


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 209 bits (533),  Expect = 7e-65, Method: Composition-based stats.
 Identities = 99/279 (35%), Positives = 147/279 (53%), Gaps = 13/279 (5%)

Query  23   LFVAFGGILFGYDTGTISGILAMP-YWRKLFSTGYINPDDNYPDITSSQSSMIVSLLSAG  81
            L  A GG LFGYDTG I   L +  +++    +  ++         S  S +IVS+ S G
Sbjct  3    LVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAA----LSVLSGLIVSIFSVG  58

Query  82   TFFGALGAAPVADYFGRRLGMIINSGVFCFGVILQTAAT---AIPLFVAGRFFAGFGVGL  138
             F G+L A  + D FGR+  ++I + +F  G +LQ AA    ++   + GR   G GVG 
Sbjct  59   CFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGG  118

Query  139  LSATVPLYQSETAPKWIRGTIVGAYQLAITLGLLIAAIVNNATKDRMDTGCYRIPVAIQF  198
             S   P+Y SE APK +RG +   YQLAIT G+L+A I         ++  +RIP+ +Q 
Sbjct  119  ASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQL  178

Query  199  AWAIILVTGMLVLPETPRFLIKKDKHEAAARALSRLRRMDVNDPALIEELSEIQANHEYE  258
              A++L+ G+L LPE+PR+L++K + E A   L++LR +   D  L E    +    E  
Sbjct  179  VPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSL----EAG  234

Query  259  LSMGTASYLEILRG-TIGKRLATGCGIQALQQLAGVNFI  296
                 AS+ E+    T  +RL  G  +Q  QQL G+N I
Sbjct  235  QEAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAI  273



Lambda      K        H        a         alpha
   0.326    0.141    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00012836

Length=641
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461162 pfam04083, Abhydro_lipase, Partial alpha/beta-hydrolas...  73.3    6e-17


>CDD:461162 pfam04083, Abhydro_lipase, Partial alpha/beta-hydrolase lipase 
region.  This family corresponds to a N-terminal part of an 
alpha/beta hydrolase domain.
Length=63

 Score = 73.3 bits (181),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 23/86 (27%)

Query  228  VRYYARRVGLDVETFKVQTEDGFIITLWHVFNPQEYTPLSEEERGPRGPDVFTGRRRPNA  287
            V    R  G  VE  +V TEDG+I+TL  +               P G        R N+
Sbjct  1    VSEIIRYYGYPVEEHEVTTEDGYILTLHRI---------------PAG--------RNNS  37

Query  288  SGRNQRYPVLLVHGLLQSAGAFCVND  313
            +G+  +  VLL HGLL S+  +  N 
Sbjct  38   NGKGGKPVVLLQHGLLASSDNWVTNG  63



Lambda      K        H        a         alpha
   0.323    0.139    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 808184920


Query= TCONS_00018509

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         305     5e-100
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            61.7    7e-11 


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 305 bits (784),  Expect = 5e-100, Method: Composition-based stats.
 Identities = 156/463 (34%), Positives = 231/463 (50%), Gaps = 73/463 (16%)

Query  23   LFVAFGGILFGYDTGTISGILAMP-YWRKLFSTGYINPDDNYPDITSSQSSMIVSLLSAG  81
            L  A GG LFGYDTG I   L +  +++    +  ++         S  S +IVS+ S G
Sbjct  3    LVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAA----LSVLSGLIVSIFSVG  58

Query  82   TFFGALGAAPVADYFGRRLGMIINSGVFCFGVILQTAAT---AIPLFVAGRFFAGFGVGL  138
             F G+L A  + D FGR+  ++I + +F  G +LQ AA    ++   + GR   G GVG 
Sbjct  59   CFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGG  118

Query  139  LSATVPLYQSETAPKWIRGTIVGAYQLAITLGLLIAAM----------------------  176
             S   P+Y SE APK +RG +   YQLAIT G+L+A +                      
Sbjct  119  ASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQL  178

Query  177  -------------------------------ALSRLRRMDVNDPALIEELSEIQANHEYE  205
                                            L++LR +   D  L E    +    E  
Sbjct  179  VPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSL----EAG  234

Query  206  LSMGTASYLEILRG-TIGKRLATGCGIQALQQLAGVNFIFYYGTTFFKASGISNPFIITL  264
                 AS+ E+    T  +RL  G  +Q  QQL G+N IFYY TT F+  G+S+ F++T+
Sbjct  235  QEAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTI  294

Query  265  ITNIVNVMSTFPGLYMVEKWGRRPLLMFGAFGMCVSQLIVAIVGTAT--SSDVANKVLIA  322
            I  +VN + TF  +++V+++GRRPLL+ GA GM +  +I+ IV       SD A  V I 
Sbjct  295  IVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIV  354

Query  323  FVCIYIFFFACSWGPVAWVVTGELFPLKARAKCLSITTATNWLLNWAIAYATPYMVNSGP  382
            F+ ++I FFA  WGPV WV+  ELFPL  R+K +++ TA NWL N+ I +  P + ++  
Sbjct  355  FIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIG  414

Query  383  GNANLQSKVFFIWGGFCFIAFVFVYTCIYETKGLSLEQVDELY  425
                     FFI+ G   +  +FV+  + ETKG +LE++DEL+
Sbjct  415  L-----GYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 61.7 bits (150),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 102/338 (30%), Gaps = 52/338 (15%)

Query  25   VAFGGILFGYDTGTISGILAMPYWRKLFSTGYINPDDNYPDITSSQSSMIVSLLSAGTFF  84
            +     L       +   L +     L              I+ ++  ++++L S G   
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDL-------------GISPTEIGLLLTLFSLGYAL  47

Query  85   GALGAAPVADYFGRRLGMIINSGVFCFGVILQTAATAIPLFVAGRFFAGFGVGLLSATVP  144
                A  ++D FGRR  ++I   +F  G++L   A+++ L +  R   G G G L     
Sbjct  48   AQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAAL  107

Query  145  LYQSETAPKWIRGTIVGAYQLAITLGLLIAA-------------------------MALS  179
               ++  P   RG  +G       LG  +                            A+ 
Sbjct  108  ALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVL  167

Query  180  RLRRMDVNDPALIEELSEIQANHEYELSMGTASYLEILRGTIGKRLATGCGIQALQQLAG  239
             L      +    +   E + +            L +    + +       +  L     
Sbjct  168  LLLPRPPPESKRPKPAEEARLS------------LIVAWKALLRDPVLWLLLALLLFGFA  215

Query  240  VNFIFYYGTTFFKASGISNPFIITL--ITNIVNVMSTFPGLYMVEKWGRRPLLMFGAFGM  297
               +  Y   + +  G+S      L  +  ++  +       + ++ GRR  L+     +
Sbjct  216  FFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLL  275

Query  298  CVSQLIVAIVGTATSSDVANKVLIAFVCIYIFFFACSW  335
             ++ L + ++    SS      L+     +   F    
Sbjct  276  ILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALN  313



Lambda      K        H        a         alpha
   0.325    0.140    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593543448


Query= TCONS_00018510

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         266     9e-87


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 266 bits (683),  Expect = 9e-87, Method: Composition-based stats.
 Identities = 113/292 (39%), Positives = 174/292 (60%), Gaps = 12/292 (4%)

Query  6    YRIPVAIQFAWAIILVTGMLVLPETPRFLIKKDKHEAAARALSRLRRMDVNDPALIEELS  65
            +RIP+ +Q   A++L+ G+L LPE+PR+L++K + E A   L++LR +   D  L E   
Sbjct  170  WRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKD  229

Query  66   EIQANHEYELSMGTASYLEILRG-TIGKRLATGCGIQALQQLAGVNFIFYYGTTFFKASG  124
             +    E       AS+ E+    T  +RL  G  +Q  QQL G+N IFYY TT F+  G
Sbjct  230  SL----EAGQEAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLG  285

Query  125  ISNPFIITLITNIVNVMSTFPGLYMVEKWGRRPLLMFGAFGMCVSQLIVAIVGTAT--SS  182
            +S+ F++T+I  +VN + TF  +++V+++GRRPLL+ GA GM +  +I+ IV       S
Sbjct  286  LSDSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKS  345

Query  183  DVANKVLIAFVCIYIFFFACSWGPVAWVVTGELFPLKARAKCLSITTATNWLLNWAIAYA  242
            D A  V I F+ ++I FFA  WGPV WV+  ELFPL  R+K +++ TA NWL N+ I + 
Sbjct  346  DWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFL  405

Query  243  TPYMVNSGPGNANLQSKVFFIWGGFCFIAFVFVYTCIYETKGLSLEQVDELY  294
             P + ++           FFI+ G   +  +FV+  + ETKG +LE++DEL+
Sbjct  406  FPIITDAIGL-----GYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.325    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00012838

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         119     9e-33


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 119 bits (301),  Expect = 9e-33, Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 86/164 (52%), Gaps = 6/164 (4%)

Query  23   LFVAFGGILFGYDTGTISGILAMPYWRKLFSTGYINPDDNYPDITSSQSSMIVSLLSAGT  82
            L  A GG LFGYDTG I   L +  + K F    ++   +     S  S +IVS+ S G 
Sbjct  3    LVAALGGFLFGYDTGVIGAFLTLIDFFKNF---GLSKSVSSLAALSVLSGLIVSIFSVGC  59

Query  83   FFGALGAAPVADYFGRRLGMIINSGVFCFGVILQTAAT---AIPLFVAGRFFAGFGVGLL  139
            F G+L A  + D FGR+  ++I + +F  G +LQ AA    ++   + GR   G GVG  
Sbjct  60   FIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGA  119

Query  140  SATGPLYQSETAPKWIRGTIVGAYQLAITLGLLIAAIVNNATKD  183
            S   P+Y SE APK +RG +   YQLAIT G+L+A I       
Sbjct  120  SVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNK  163



Lambda      K        H        a         alpha
   0.326    0.143    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00012839

Length=641
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461162 pfam04083, Abhydro_lipase, Partial alpha/beta-hydrolas...  73.3    6e-17


>CDD:461162 pfam04083, Abhydro_lipase, Partial alpha/beta-hydrolase lipase 
region.  This family corresponds to a N-terminal part of an 
alpha/beta hydrolase domain.
Length=63

 Score = 73.3 bits (181),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 23/86 (27%)

Query  228  VRYYARRVGLDVETFKVQTEDGFIITLWHVFNPQEYTPLSEEERGPRGPDVFTGRRRPNA  287
            V    R  G  VE  +V TEDG+I+TL  +               P G        R N+
Sbjct  1    VSEIIRYYGYPVEEHEVTTEDGYILTLHRI---------------PAG--------RNNS  37

Query  288  SGRNQRYPVLLVHGLLQSAGAFCVND  313
            +G+  +  VLL HGLL S+  +  N 
Sbjct  38   NGKGGKPVVLLQHGLLASSDNWVTNG  63



Lambda      K        H        a         alpha
   0.323    0.139    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 808184920


Query= TCONS_00012840

Length=75
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395138 pfam00190, Cupin_1, Cupin. This family represents the ...  59.7    1e-13


>CDD:395138 pfam00190, Cupin_1, Cupin.  This family represents the conserved 
barrel domain of the 'cupin' superfamily ('cupa' is the 
Latin term for a small barrel). This family contains 11S and 
7S plant seed storage proteins, and germins. Plant seed storage 
proteins provide the major nitrogen source for the developing 
plant.
Length=151

 Score = 59.7 bits (145),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 20/69 (29%), Positives = 29/69 (42%), Gaps = 2/69 (3%)

Query  1    MREIHWHPTSDEWAFFIRGQGRATLFSAPSTATTFD--YRAGDVGYFPKSNSHYIENTGD  58
            M   HWHP + E  + ++G+GR       +    F    R GDV   P+   H+  N GD
Sbjct  45   MNPPHWHPNATEILYVLQGRGRVGFVVPGNGNRVFHKVLREGDVFVVPQGLPHFQYNIGD  104

Query  59   EDLLFLEVL  67
            E  +     
Sbjct  105  EPAVAFVAF  113



Lambda      K        H        a         alpha
   0.320    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00012841

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395138 pfam00190, Cupin_1, Cupin. This family represents the ...  83.9    9e-20
CDD:462300 pfam07883, Cupin_2, Cupin domain. This family represen...  60.3    2e-12


>CDD:395138 pfam00190, Cupin_1, Cupin.  This family represents the conserved 
barrel domain of the 'cupin' superfamily ('cupa' is the 
Latin term for a small barrel). This family contains 11S and 
7S plant seed storage proteins, and germins. Plant seed storage 
proteins provide the major nitrogen source for the developing 
plant.
Length=151

 Score = 83.9 bits (208),  Expect = 9e-20, Method: Composition-based stats.
 Identities = 38/136 (28%), Positives = 56/136 (41%), Gaps = 8/136 (6%)

Query  312  GGSVKIVDPVTFPI--ASNFSAAVVTVKPGGMREIHWHPTSDEWAFFIRGQGRATLFSAP  369
            GG V  V+    P       SAA V + PGGM   HWHP + E  + ++G+GR       
Sbjct  14   GGRVTTVNSKNLPGLNTLGISAARVDLAPGGMNPPHWHPNATEILYVLQGRGRVGFVVPG  73

Query  370  STATTFD--YRAGDVGYFPKSNSHYIENTGDEDLLFLEVL--QADKFTDIALGQ--WIAS  423
            +    F    R GDV   P+   H+  N GDE  +              I  G    + +
Sbjct  74   NGNRVFHKVLREGDVFVVPQGLPHFQYNIGDEPAVAFVAFDTNNPGNQSILAGGFSSLPA  133

Query  424  TPRQIVADTLKLSNET  439
             P +++A   +L+ E 
Sbjct  134  LPPEVLAKAFQLAGEE  149


 Score = 67.7 bits (166),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 43/127 (34%), Gaps = 17/127 (13%)

Query  133  AMAGVDMRLEPHAYRELHWHV-AAEWSLVLNGSCRIQVRFSLLFIDVADRQAVNENGET-  190
             ++   + L P      HWH  A E   VL G  R+                V  NG   
Sbjct  32   GISAARVDLAPGGMNPPHWHPNATEILYVLQGRGRV-------------GFVVPGNGNRV  78

Query  191  FIDDVSEGDVWFFPPGVPHSIQAFNT--GVEFLLVFDDGSFSEDNTFLASEVFAHNPREV  248
            F   + EGDV+  P G+PH          V F+    +   ++             P EV
Sbjct  79   FHKVLREGDVFVVPQGLPHFQYNIGDEPAVAFVAFDTNNPGNQSILAGGFSSLPALPPEV  138

Query  249  LAKDLGV  255
            LAK   +
Sbjct  139  LAKAFQL  145


>CDD:462300 pfam07883, Cupin_2, Cupin domain.  This family represents the 
conserved barrel domain of the 'cupin' superfamily ('cupa' 
is the Latin term for a small barrel).
Length=71

 Score = 60.3 bits (147),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 26/75 (35%), Positives = 35/75 (47%), Gaps = 5/75 (7%)

Query  332  AVVTVKPGGMREIHWHPTSDEWAFFIRGQGRATLFSAPSTATTFDYRAGDVGYFPKSNSH  391
             +VT+ PG     H HP  DE+ + + G+G  T+            +AGD  YFP    H
Sbjct  1    GLVTLPPGESSPPHRHPGEDEFFYVLEGEGELTV-----DGEEVVLKAGDSVYFPAGVPH  55

Query  392  YIENTGDEDLLFLEV  406
               NTGDE    L+V
Sbjct  56   RFRNTGDEPARLLDV  70



Lambda      K        H        a         alpha
   0.316    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00012842

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0794    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00012843

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00012845

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429478 pfam07470, Glyco_hydro_88, Glycosyl Hydrolase Family 8...  139     8e-41


>CDD:429478 pfam07470, Glyco_hydro_88, Glycosyl Hydrolase Family 88.  Unsaturated 
glucuronyl hydrolase catalyzes the hydrolytic release 
of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) 
produced by the reactions of polysaccharide lyases.
Length=345

 Score = 139 bits (351),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 62/161 (39%), Positives = 85/161 (53%), Gaps = 9/161 (6%)

Query  16   VWNRAVGWYFMSLVDILDYLPRSHPGYEKNLRRFQSLAKALKKTQDKSGGWWLIMDGEYP  75
             W R  GWY M+L D+L+ LP  HP  ++ +   + L KAL K QD+SG W   +D    
Sbjct  191  FWARGNGWYAMALADVLELLPEKHPARQELINILRDLVKALAKYQDESGLWHQSLD---D  247

Query  76   RDPRNYIESSGTAMFAYGLLKGVRKGYIRSKDYLAPATKAYNLMVDKFVETNADGTLNWL  135
             D  +Y+E+S +A F Y L KGV KGY+  K YL  A KA+  ++  FV+   DG L  +
Sbjct  248  PDRDSYLETSASAGFVYALAKGVNKGYL-DKKYLPVAQKAWKALLKNFVD--EDGQLGVV  304

Query  136  GTVQVGSLSSNGTFEYYISVPVVQDDYKGAGPFMYASYEIE  176
                   +   G  +YY SVP   +D  G G F+ AS E  
Sbjct  305  QICGGTGI---GGDDYYRSVPYNSNDPYGVGAFLLASTEYL  342



Lambda      K        H        a         alpha
   0.318    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00012846

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429478 pfam07470, Glyco_hydro_88, Glycosyl Hydrolase Family 8...  124     1e-34


>CDD:429478 pfam07470, Glyco_hydro_88, Glycosyl Hydrolase Family 88.  Unsaturated 
glucuronyl hydrolase catalyzes the hydrolytic release 
of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) 
produced by the reactions of polysaccharide lyases.
Length=345

 Score = 124 bits (313),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 73/172 (42%), Positives = 93/172 (54%), Gaps = 14/172 (8%)

Query  45   YANGVLYTGMEFAYNKTKDERYFTYIKSQVDAVVDPSGGLIDYPGSTVSLDDIRIGLNLL  104
            + NGV   GM  AY  T D+ Y  Y+K+  D+++D  GG I  P    +LDDI IGL LL
Sbjct  29   WTNGVFLYGMLEAYEATGDKEYLDYLKAWADSLID-EGGKILTP---YNLDDINIGLTLL  84

Query  105  WLWTKTGDDRYKIAADTLRE-QLNFTPRNKAGGFWHRKPTYPNQMWLDGIYMAENFYAQY  163
             L+  TGD+RY  AA  L +  L   PR   GGFWH+   YP+QMWLDG++MA  F A+Y
Sbjct  85   DLYEHTGDERYIQAAIELADWVLATPPRTSEGGFWHKDI-YPHQMWLDGLFMAGPFLAKY  143

Query  164  TAWFQPNNATAWDDIMLQFDLIEEHCR-LKTGLLVHGYDESK-----VAVWA  209
                  N     D+ + QF L   H    +TGL  HG+DES         WA
Sbjct  144  GKLT--NEPKYLDEAVYQFLLTRRHLYDPETGLYYHGWDESGTEPWADPFWA  193



Lambda      K        H        a         alpha
   0.319    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00012847

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429478 pfam07470, Glyco_hydro_88, Glycosyl Hydrolase Family 8...  252     7e-82


>CDD:429478 pfam07470, Glyco_hydro_88, Glycosyl Hydrolase Family 88.  Unsaturated 
glucuronyl hydrolase catalyzes the hydrolytic release 
of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) 
produced by the reactions of polysaccharide lyases.
Length=345

 Score = 252 bits (645),  Expect = 7e-82, Method: Composition-based stats.
 Identities = 137/337 (41%), Positives = 180/337 (53%), Gaps = 25/337 (7%)

Query  45   YANGVLYTGMEFAYNKTKDERYFTYIKSQVDAVVDPSGGLIDYPGSTVSLDDIRIGLNLL  104
            + NGV   GM  AY  T D+ Y  Y+K+  D+++D  GG I  P    +LDDI IGL LL
Sbjct  29   WTNGVFLYGMLEAYEATGDKEYLDYLKAWADSLID-EGGKILTP---YNLDDINIGLTLL  84

Query  105  WLWTKTGDDRYKIAADTLRE-QLNFTPRNKAGGFWHRKPTYPNQMWLDGIYMAENFYAQY  163
             L+  TGD+RY  AA  L +  L   PR   GGFWH+   YP+QMWLDG++MA  F A+Y
Sbjct  85   DLYEHTGDERYIQAAIELADWVLATPPRTSEGGFWHKDI-YPHQMWLDGLFMAGPFLAKY  143

Query  164  TAWFQPNNATAWDDIMLQFDLIEEHCR-LKTGLLVHGYDESKVAVWADPVTGGAPHVWNR  222
                  N     D+ + QF L   H    +TGL  HG+DES    WADP        W R
Sbjct  144  GKLT--NEPKYLDEAVYQFLLTRRHLYDPETGLYYHGWDESGTEPWADP-------FWAR  194

Query  223  AVGWYFMSLVDILDYLPRSHPGYEKNLRRFQSLAKALKKTQDKSGGWWLIMDGEYPRDPR  282
              GWY M+L D+L+ LP  HP  ++ +   + L KAL K QD+SG W   +D     D  
Sbjct  195  GNGWYAMALADVLELLPEKHPARQELINILRDLVKALAKYQDESGLWHQSLD---DPDRD  251

Query  283  NYIESSGTAMFAYGLLKGVRKGYIRSKDYLAPATKAYNLMVDKFVETNADGTLNWLGTVQ  342
            +Y+E+S +A F Y L KGV KGY+  K YL  A KA+  ++  FV+   DG L  +    
Sbjct  252  SYLETSASAGFVYALAKGVNKGYL-DKKYLPVAQKAWKALLKNFVD--EDGQLGVVQICG  308

Query  343  VGSLSSNGTFEYYISVPVVQDDYKGAGPFMYASYEIE  379
               +   G  +YY SVP   +D  G G F+ AS E  
Sbjct  309  GTGI---GGDDYYRSVPYNSNDPYGVGAFLLASTEYL  342



Lambda      K        H        a         alpha
   0.319    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00012849

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00012850

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00012848

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00012851

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00018511

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.151    0.557    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00018512

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00012852

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.135    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00012853

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00012854

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00012855

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00012858

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00012857

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00012859

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00012860

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00018513

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00012861

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461547 pfam05091, eIF-3_zeta, Eukaryotic translation initiati...  682     0.0  


>CDD:461547 pfam05091, eIF-3_zeta, Eukaryotic translation initiation factor 
3 subunit 7 (eIF-3).  This family is made up of eukaryotic 
translation initiation factor 3 subunit 7 (eIF-3 zeta/eIF3 
p66/eIF3d). Eukaryotic initiation factor 3 is a multi-subunit 
complex that is required for binding of mRNA to 40 S ribosomal 
subunits, stabilisation of ternary complex binding to 
40 S subunits, and dissociation of 40 and 60 S subunits. These 
functions and the complex nature of eIF3 suggest multiple 
interactions with many components of the translational machinery. 
The gene coding for the protein has been implicated in 
cancer in mammals.
Length=521

 Score = 682 bits (1761),  Expect = 0.0, Method: Composition-based stats.
 Identities = 243/376 (65%), Positives = 289/376 (77%), Gaps = 19/376 (5%)

Query  1    MLEEVDFNRLSKLNLEAPEGEDLDSYGFLYYYDRSYDKAPVKNAERKLQALERAAYNVTT  60
            +LEE+DF+RLSKLNLE PE EDLDSYG LYYYD+SYD+  VKN ER LQ L+R  YNVTT
Sbjct  165  VLEEIDFSRLSKLNLEVPEPEDLDSYGTLYYYDKSYDRITVKN-ERPLQKLDRIFYNVTT  223

Query  61   SQDPVIQELAEKNEATVFATSDILSMLMCAPRSVYSWDIVIVHQGDKIYFDKREGASIDL  120
            S DPVIQELA++N+A VFAT  ILS LMCA RSVYSWDIV+   G+K++FDKR+G+  DL
Sbjct  224  SDDPVIQELAKENKANVFATDAILSTLMCATRSVYSWDIVVTKVGNKLFFDKRDGSPFDL  283

Query  121  VTVNENAADAPVETADSSGKQESINTPSALALEATFINHNFALQTVVESEESKVTFNHPN  180
            +TVNE AAD P +       ++SIN+PS+L+LEAT+IN NF+ Q + E EE KV F  PN
Sbjct  284  LTVNETAADPPQD------DEDSINSPSSLSLEATYINQNFSQQVLKEGEEEKVKFEEPN  337

Query  181  PFYNAAEETEPLASKGYKYRRFDLSLQDDEEPLNMIVRTEVDAVMKNPVGGEDQHLIVKA  240
            PFYN  EETEPLAS  Y+YR+FDL    ++EP+N+IVRTEVDAV+K    GE Q L +KA
Sbjct  338  PFYNPDEETEPLASVAYRYRKFDLGD-GEDEPINLIVRTEVDAVLKGT-NGELQFLTIKA  395

Query  241  LNEFDSKAPGSGGALDWRSKLWSQRGAVVATEMKNNSIKLARWTTQAILAKADAMKLGFV  300
            LNEFDSKA G   A DWR+KL SQRGAV+ATE+KNNS KLA+WT QA+LA AD MKLG+V
Sbjct  396  LNEFDSKAQG---AADWRTKLDSQRGAVLATELKNNSCKLAKWTVQALLAGADQMKLGYV  452

Query  301  SRANPRSATSHVILGVVGYKPREFAAQMNLNLGNGWGIVRTIVDRIRALDAEEEEDKVKK  360
            SRANPR  ++HVILG   YKPR+FA Q+NLNL NGWGIVRTI+D               K
Sbjct  453  SRANPRDNSNHVILGTQSYKPRDFATQINLNLDNGWGIVRTIIDLCMKQPD-------GK  505

Query  361  YVLIKDPNRPVIRLYS  376
            YVL+KDPN+PVIRLYS
Sbjct  506  YVLVKDPNKPVIRLYS  521



Lambda      K        H        a         alpha
   0.312    0.129    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00012862

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461547 pfam05091, eIF-3_zeta, Eukaryotic translation initiati...  856     0.0  


>CDD:461547 pfam05091, eIF-3_zeta, Eukaryotic translation initiation factor 
3 subunit 7 (eIF-3).  This family is made up of eukaryotic 
translation initiation factor 3 subunit 7 (eIF-3 zeta/eIF3 
p66/eIF3d). Eukaryotic initiation factor 3 is a multi-subunit 
complex that is required for binding of mRNA to 40 S ribosomal 
subunits, stabilisation of ternary complex binding to 
40 S subunits, and dissociation of 40 and 60 S subunits. These 
functions and the complex nature of eIF3 suggest multiple 
interactions with many components of the translational machinery. 
The gene coding for the protein has been implicated in 
cancer in mammals.
Length=521

 Score = 856 bits (2214),  Expect = 0.0, Method: Composition-based stats.
 Identities = 317/545 (58%), Positives = 375/545 (69%), Gaps = 34/545 (6%)

Query  16   EDTWGPATPSDNMLDGVPYAPFSKGDKLGRMADWTGDGKDRDRSGRQAYNRNYRDQQVYG  75
             D WGP +        +PYAPFSK DKLG++ADWT       R  R  Y      QQ YG
Sbjct  10   PDGWGPPSSLPEEFKDIPYAPFSKSDKLGKIADWTSTMAKDGRQQRGRY------QQYYG  63

Query  76   AGTSSLFNIQVAEDESSFSVVDNTRTSTKRTFARGGGTVFRGRGQRGVGQRGGRAGFQRV  135
            AG++S F  Q AEDESSFS+VDN+R   KR   R         G +              
Sbjct  64   AGSASAFAYQHAEDESSFSLVDNSRAKKKRRGGRQRQRGRGRGGFQRRR--------GGQ  115

Query  136  GAGRGQGGDRYYDNRSARSNRGRRFGWKDY-DKPQRTREPSVNVRPDWTMLEEVDFNRLS  194
             A   + G     +R  R  RGRRFGWKD+ DKPQR RE SV VRPDW +LEE+DF+RLS
Sbjct  116  QAFNQKQGGGRGASRGGRGGRGRRFGWKDWNDKPQRNREASVEVRPDWEVLEEIDFSRLS  175

Query  195  KLNLEAPEGEDLDSYGFLYYYDRSYDKAPVKNAERKLQALERAAYNVTTSQDPVIQELAE  254
            KLNLE PE EDLDSYG LYYYD+SYD+  VKN ER LQ L+R  YNVTTS DPVIQELA+
Sbjct  176  KLNLEVPEPEDLDSYGTLYYYDKSYDRITVKN-ERPLQKLDRIFYNVTTSDDPVIQELAK  234

Query  255  KNEATVFATSDILSMLMCAPRSVYSWDIVIVHQGDKIYFDKREGASIDLVTVNENAADAP  314
            +N+A VFAT  ILS LMCA RSVYSWDIV+   G+K++FDKR+G+  DL+TVNE AAD P
Sbjct  235  ENKANVFATDAILSTLMCATRSVYSWDIVVTKVGNKLFFDKRDGSPFDLLTVNETAADPP  294

Query  315  VETADSSGKQESINTPSALALEATFINHNFALQTVVESEESKVTFNHPNPFYNAAEETEP  374
             +       ++SIN+PS+L+LEAT+IN NF+ Q + E EE KV F  PNPFYN  EETEP
Sbjct  295  QD------DEDSINSPSSLSLEATYINQNFSQQVLKEGEEEKVKFEEPNPFYNPDEETEP  348

Query  375  LASKGYKYRRFDLSLQDDEEPLNMIVRTEVDAVMKNPVGGEDQHLIVKALNEFDSKAPGS  434
            LAS  Y+YR+FDL    ++EP+N+IVRTEVDAV+K    GE Q L +KALNEFDSKA G 
Sbjct  349  LASVAYRYRKFDLGD-GEDEPINLIVRTEVDAVLKGT-NGELQFLTIKALNEFDSKAQG-  405

Query  435  GGALDWRSKLWSQRGAVVATEMKNNSIKLARWTTQAILAKADAMKLGFVSRANPRSATSH  494
              A DWR+KL SQRGAV+ATE+KNNS KLA+WT QA+LA AD MKLG+VSRANPR  ++H
Sbjct  406  --AADWRTKLDSQRGAVLATELKNNSCKLAKWTVQALLAGADQMKLGYVSRANPRDNSNH  463

Query  495  VILGVVGYKPREFAAQMNLNLGNGWGIVRTIVDRIRALDAEEEEDKVKKYVLIKDPNRPV  554
            VILG   YKPR+FA Q+NLNL NGWGIVRTI+D               KYVL+KDPN+PV
Sbjct  464  VILGTQSYKPRDFATQINLNLDNGWGIVRTIIDLCMKQPD-------GKYVLVKDPNKPV  516

Query  555  IRLYS  559
            IRLYS
Sbjct  517  IRLYS  521



Lambda      K        H        a         alpha
   0.313    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 736753004


Query= TCONS_00012863

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00012864

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00012865

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00018514

Length=747
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463453 pfam12066, DUF3546, Domain of unknown function (DUF354...  143     4e-41


>CDD:463453 pfam12066, DUF3546, Domain of unknown function (DUF3546).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
93 to 114 amino acids in length. This domain has two completely 
conserved Y residues that may be functionally important.
Length=110

 Score = 143 bits (364),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 45/96 (47%), Positives = 61/96 (64%), Gaps = 1/96 (1%)

Query  121  QIQAAYDAYKVDLQIKMSRTFVQHHRNEEWFKERYVPEVRDPLRRRLMDFRVGAYQQWER  180
            + Q  YD YK++ Q K +  F   H++EEWFKE+Y PE RD  R  L +FR    + +E 
Sbjct  15   EAQKKYDEYKLEFQRKQANEFFVAHKDEEWFKEKYHPEERDKRREELREFRRKRLEVFEE  74

Query  181  DLEGGLFDDFTLE-GIYKTESDGAGGVIEKEEGETT  215
            DLE G+FD+ +L+ GIYK+ES    GV+ KEEG T 
Sbjct  75   DLESGVFDEVSLDMGIYKSESKLLDGVVIKEEGGTD  110



Lambda      K        H        a         alpha
   0.316    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 950214256


Query= TCONS_00012867

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396572 pfam02045, CBFB_NFYA, CCAAT-binding transcription fact...  111     1e-31


>CDD:396572 pfam02045, CBFB_NFYA, CCAAT-binding transcription factor (CBF-B/NF-YA) 
subunit B.  
Length=56

 Score = 111 bits (281),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 44/56 (79%), Positives = 48/56 (86%), Gaps = 1/56 (2%)

Query  232  PLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRF  287
            P+YVNAKQ+HRILKRR AR KLE + +L  K RKPYLHESRH HAMRRPRGPGGRF
Sbjct  2    PIYVNAKQYHRILKRRQARAKLEAEGKL-PKNRKPYLHESRHKHAMRRPRGPGGRF  56



Lambda      K        H        a         alpha
   0.308    0.123    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00012866

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00018515

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00018516

Length=455


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00012869

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396572 pfam02045, CBFB_NFYA, CCAAT-binding transcription fact...  111     1e-31


>CDD:396572 pfam02045, CBFB_NFYA, CCAAT-binding transcription factor (CBF-B/NF-YA) 
subunit B.  
Length=56

 Score = 111 bits (281),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 44/56 (79%), Positives = 48/56 (86%), Gaps = 1/56 (2%)

Query  232  PLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRF  287
            P+YVNAKQ+HRILKRR AR KLE + +L  K RKPYLHESRH HAMRRPRGPGGRF
Sbjct  2    PIYVNAKQYHRILKRRQARAKLEAEGKL-PKNRKPYLHESRHKHAMRRPRGPGGRF  56



Lambda      K        H        a         alpha
   0.308    0.123    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00012871

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00012870

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00012872

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00012873

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00012874

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00012875

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00012876

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00018518

Length=1632
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459720 pfam00225, Kinesin, Kinesin motor domain                   445     2e-144
CDD:463599 pfam12473, DUF3694, Kinesin protein. This domain famil...  237     7e-73 
CDD:465047 pfam16183, Kinesin_assoc, Kinesin-associated               156     5e-44 
CDD:465274 pfam16796, Microtub_bd, Microtubule binding. This moto...  82.7    8e-19 


>CDD:459720 pfam00225, Kinesin, Kinesin motor domain.  
Length=326

 Score = 445 bits (1146),  Expect = 2e-144, Method: Composition-based stats.
 Identities = 171/352 (49%), Positives = 227/352 (64%), Gaps = 29/352 (8%)

Query  14   RVRPFNSREIDRGAKCIVQMKGNQTILVPPPGADEKSRKAGGKGAVEGPKTFAFDRSYWS  73
            RVRP N RE +RG+  IV ++   +  V      E S            KTF FD+ +  
Sbjct  1    RVRPLNEREKERGSSVIVSVESVDSETV------ESSHLTN----KNRTKTFTFDKVFDP  50

Query  74   FDKNAPNYAGQDNLFADLGVPLLDNAFQGYNNCIFAYGQTGSGKSYSMMGYGKEYGVIPR  133
                    A Q++++ +   PL+++  +GYN  IFAYGQTGSGK+Y+M G  ++ G+IPR
Sbjct  51   E-------ATQEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGSDEQPGIIPR  103

Query  134  ICQEMFQRIAKMQEDKNLNCTVEVSYLEIYNERVRDLLNPS--NKGNLKVREHPSTGPYV  191
              +++F RI K +E      +V+VSYLEIYNE++RDLL+PS  NK  L++RE P  G YV
Sbjct  104  ALEDLFDRIQKTKE--RSEFSVKVSYLEIYNEKIRDLLSPSNKNKRKLRIREDPKKGVYV  161

Query  192  EDLAKLAVRSFEEIDHLMDEGNKARTVAATNMNETSSRSHAVFTLTLTQKRHDAETSMDT  251
            + L ++ V S EE+  L+  GNK RTVAAT MNE SSRSHA+FT+T+ Q+        ++
Sbjct  162  KGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGE-ES  220

Query  252  EKVSRISLVDLAGSERANSTG-ATGARLKEGAEINRSLSTLGRVIAALADVASGKKKNAS  310
             K  +++LVDLAGSERA+ TG A G RLKE A IN+SLS LG VI+ALAD      K + 
Sbjct  221  VKTGKLNLVDLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALAD------KKSK  274

Query  311  MVPYRDSILTWLLKDSLGGNSMTAMIAAISPADINFDETLSTLRYADSAKRI  362
             +PYRDS LT LL+DSLGGNS T MIA ISP+  N++ETLSTLR+A  AK I
Sbjct  275  HIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSSNYEETLSTLRFASRAKNI  326


>CDD:463599 pfam12473, DUF3694, Kinesin protein.  This domain family is found 
in eukaryotes, and is typically between 131 and 151 amino 
acids in length. The family is found in association with 
pfam00225, pfam00498. There is a single completely conserved 
residue W that may be functionally important.
Length=149

 Score = 237 bits (607),  Expect = 7e-73, Method: Composition-based stats.
 Identities = 84/150 (56%), Positives = 112/150 (75%), Gaps = 1/150 (1%)

Query  1173  EYLPVEVVQNNSLDAGTYQLHQGLQRRVLVSLTYNSTEGLPWDDLTNIRVGSVRLLDPWG  1232
             EY+PV V Q + LD GT+QLHQGLQRR++++LT++S + LPW+ + N+RVG VRLLD  G
Sbjct  1     EYVPVPVDQRSELDPGTFQLHQGLQRRIVITLTHSSGDELPWERVRNVRVGDVRLLDMKG  60

Query  1233  KIPDQDLQTPDVPLKFVQEPAVKDNADGTSNVTLVAQWDSSLHGSLLLDRVTADKYRVQV  1292
             ++PD D  TPDV LK + +P V+ NADGTS+ T+  QWDSSLH SLLL+RVTAD YRV +
Sbjct  61    RVPDSDS-TPDVSLKLLSKPVVRFNADGTSSYTIEGQWDSSLHNSLLLNRVTADGYRVYL  119

Query  1293  TVRWDLVSSRLQDPVPFEVDLTLQIQGRTY  1322
             T+ WD+VS +  +PV F +D  +QI  R  
Sbjct  120   TLAWDVVSEKCAEPVRFSMDTAVQIYPRDE  149


>CDD:465047 pfam16183, Kinesin_assoc, Kinesin-associated.  
Length=177

 Score = 156 bits (395),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 68/176 (39%), Positives = 97/176 (55%), Gaps = 25/176 (14%)

Query  366  AVVNEDPNARMIRELKEELAQLRAKLGGGSTAGAAGGMPAEEYYPPDTP-----------  414
            AV+NEDPN ++IRELK+E+A+LR  L           +        +TP           
Sbjct  1    AVINEDPNNKLIRELKDEVARLRDLLYAQGLGDIIDTIAHPTKKRANTPAANASAATAAM  60

Query  415  -----------LEKQMVSIQKADGTITKV-SKAEIVEQLNQSEKLYKDLNQTWEEKLEKT  462
                       L  +  S+      I       E +E+L ++EK+  +LN+TWEEKL KT
Sbjct  61   AGASPSPSLSALSSRAASVSSLHERIMFTPGSEEAIERLKETEKIIAELNETWEEKLRKT  120

Query  463  ERIHREREAALEELGISIEK--GFVGLSTPKKMPHLVNLSDDPLLAECLVYNIKPG  516
            E I  EREA L E+G++I +  G +G+ +PKK PHLVNL++DPL++ECL+Y IK G
Sbjct  121  EAIRMEREALLAEMGVAIREDGGTLGVFSPKKTPHLVNLNEDPLMSECLLYYIKDG  176


>CDD:465274 pfam16796, Microtub_bd, Microtubule binding.  This motor homology 
domain binds microtubules and lacks an ATP-binding site.
Length=144

 Score = 82.7 bits (205),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 40/165 (24%)

Query  7    GNIKVVVRVRPFNSREIDRGAKCIVQMKGNQTILVPPPGADEKSRKAGGKGAVEGPKTFA  66
            GNI+V  RVRP    E        +            P       K G K      K+F+
Sbjct  20   GNIRVFARVRPELLSE------AQIDY----------PDETSSDGKIGSKN-----KSFS  58

Query  67   FDRSYWSFDKNAPNYAGQDNLFADLGVPLLDNAFQGYNNCIFAYGQTGSGKSYSMMGYGK  126
            FDR    F   +     Q+++F ++   L+ +   GYN CIFAYGQTGSG +  M     
Sbjct  59   FDRV---FPPESE----QEDVFQEISQ-LVQSCLDGYNVCIFAYGQTGSGSNDGM-----  105

Query  127  EYGVIPRICQEMFQRIAKMQEDKNLNCTVEVSYLEIYNERVRDLL  171
                IPR  +++F+ I+ ++  K    T+E+ ++EIYNE  +DLL
Sbjct  106  ----IPRAREQIFRFISSLK--KGWKYTIELQFVEIYNESSQDLL  144



Lambda      K        H        a         alpha
   0.315    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2080222746


Query= TCONS_00012877

Length=1600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459720 pfam00225, Kinesin, Kinesin motor domain                   427     3e-138
CDD:463599 pfam12473, DUF3694, Kinesin protein. This domain famil...  237     8e-73 
CDD:465047 pfam16183, Kinesin_assoc, Kinesin-associated               156     6e-44 
CDD:465274 pfam16796, Microtub_bd, Microtubule binding. This moto...  74.9    5e-16 


>CDD:459720 pfam00225, Kinesin, Kinesin motor domain.  
Length=326

 Score = 427 bits (1101),  Expect = 3e-138, Method: Composition-based stats.
 Identities = 157/307 (51%), Positives = 208/307 (68%), Gaps = 19/307 (6%)

Query  27   VEGPKTFAFDRSYWSFDKNAPNYAGQDNLFADLGVPLLDNAFQGYNNCIFAYGQTGSGKS  86
                KTF FD+ +          A Q++++ +   PL+++  +GYN  IFAYGQTGSGK+
Sbjct  36   KNRTKTFTFDKVFDPE-------ATQEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKT  88

Query  87   YSMMGYGKEYGVIPRICQEMFQRIAKMQEDKNLNCTVEVSYLEIYNERVRDLLNPS--NK  144
            Y+M G  ++ G+IPR  +++F RI K +E      +V+VSYLEIYNE++RDLL+PS  NK
Sbjct  89   YTMEGSDEQPGIIPRALEDLFDRIQKTKE--RSEFSVKVSYLEIYNEKIRDLLSPSNKNK  146

Query  145  GNLKVREHPSTGPYVEDLAKLAVRSFEEIDHLMDEGNKARTVAATNMNETSSRSHAVFTL  204
              L++RE P  G YV+ L ++ V S EE+  L+  GNK RTVAAT MNE SSRSHA+FT+
Sbjct  147  RKLRIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTI  206

Query  205  TLTQKRHDAETSMDTEKVSRISLVDLAGSERANSTG-ATGARLKEGAEINRSLSTLGRVI  263
            T+ Q+        ++ K  +++LVDLAGSERA+ TG A G RLKE A IN+SLS LG VI
Sbjct  207  TVEQRNRSTGGE-ESVKTGKLNLVDLAGSERASKTGAAGGQRLKEAANINKSLSALGNVI  265

Query  264  AALADVASGKKKNASMVPYRDSILTWLLKDSLGGNSMTAMIAAISPADINFDETLSTLRY  323
            +ALAD      K +  +PYRDS LT LL+DSLGGNS T MIA ISP+  N++ETLSTLR+
Sbjct  266  SALAD------KKSKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSSNYEETLSTLRF  319

Query  324  ADSAKRI  330
            A  AK I
Sbjct  320  ASRAKNI  326


>CDD:463599 pfam12473, DUF3694, Kinesin protein.  This domain family is found 
in eukaryotes, and is typically between 131 and 151 amino 
acids in length. The family is found in association with 
pfam00225, pfam00498. There is a single completely conserved 
residue W that may be functionally important.
Length=149

 Score = 237 bits (607),  Expect = 8e-73, Method: Composition-based stats.
 Identities = 84/150 (56%), Positives = 112/150 (75%), Gaps = 1/150 (1%)

Query  1141  EYLPVEVVQNNSLDAGTYQLHQGLQRRVLVSLTYNSTEGLPWDDLTNIRVGSVRLLDPWG  1200
             EY+PV V Q + LD GT+QLHQGLQRR++++LT++S + LPW+ + N+RVG VRLLD  G
Sbjct  1     EYVPVPVDQRSELDPGTFQLHQGLQRRIVITLTHSSGDELPWERVRNVRVGDVRLLDMKG  60

Query  1201  KIPDQDLQTPDVPLKFVQEPAVKDNADGTSNVTLVAQWDSSLHGSLLLDRVTADKYRVQV  1260
             ++PD D  TPDV LK + +P V+ NADGTS+ T+  QWDSSLH SLLL+RVTAD YRV +
Sbjct  61    RVPDSDS-TPDVSLKLLSKPVVRFNADGTSSYTIEGQWDSSLHNSLLLNRVTADGYRVYL  119

Query  1261  TVRWDLVSSRLQDPVPFEVDLTLQIQGRTY  1290
             T+ WD+VS +  +PV F +D  +QI  R  
Sbjct  120   TLAWDVVSEKCAEPVRFSMDTAVQIYPRDE  149


>CDD:465047 pfam16183, Kinesin_assoc, Kinesin-associated.  
Length=177

 Score = 156 bits (395),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 68/176 (39%), Positives = 97/176 (55%), Gaps = 25/176 (14%)

Query  334  AVVNEDPNARMIRELKEELAQLRAKLGGGSTAGAAGGMPAEEYYPPDTP-----------  382
            AV+NEDPN ++IRELK+E+A+LR  L           +        +TP           
Sbjct  1    AVINEDPNNKLIRELKDEVARLRDLLYAQGLGDIIDTIAHPTKKRANTPAANASAATAAM  60

Query  383  -----------LEKQMVSIQKADGTITKV-SKAEIVEQLNQSEKLYKDLNQTWEEKLEKT  430
                       L  +  S+      I       E +E+L ++EK+  +LN+TWEEKL KT
Sbjct  61   AGASPSPSLSALSSRAASVSSLHERIMFTPGSEEAIERLKETEKIIAELNETWEEKLRKT  120

Query  431  ERIHREREAALEELGISIEK--GFVGLSTPKKMPHLVNLSDDPLLAECLVYNIKPG  484
            E I  EREA L E+G++I +  G +G+ +PKK PHLVNL++DPL++ECL+Y IK G
Sbjct  121  EAIRMEREALLAEMGVAIREDGGTLGVFSPKKTPHLVNLNEDPLMSECLLYYIKDG  176


>CDD:465274 pfam16796, Microtub_bd, Microtubule binding.  This motor homology 
domain binds microtubules and lacks an ATP-binding site.
Length=144

 Score = 74.9 bits (185),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 19/110 (17%)

Query  30   PKTFAFDRSYWSFDKNAPNYAGQDNLFADLGVPLLDNAFQGYNNCIFAYGQTGSGKSYSM  89
             K+F+FDR    F   +     Q+++F ++   L+ +   GYN CIFAYGQTGSG +  M
Sbjct  54   NKSFSFDRV---FPPESE----QEDVFQEISQ-LVQSCLDGYNVCIFAYGQTGSGSNDGM  105

Query  90   MGYGKEYGVIPRICQEMFQRIAKMQEDKNLNCTVEVSYLEIYNERVRDLL  139
                     IPR  +++F+ I+ ++  K    T+E+ ++EIYNE  +DLL
Sbjct  106  ---------IPRAREQIFRFISSLK--KGWKYTIELQFVEIYNESSQDLL  144



Lambda      K        H        a         alpha
   0.315    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2036799962


Query= TCONS_00012878

Length=1295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459720 pfam00225, Kinesin, Kinesin motor domain                   442     1e-145
CDD:463599 pfam12473, DUF3694, Kinesin protein. This domain famil...  199     9e-60 
CDD:465047 pfam16183, Kinesin_assoc, Kinesin-associated               155     5e-44 
CDD:465274 pfam16796, Microtub_bd, Microtubule binding. This moto...  81.1    3e-18 


>CDD:459720 pfam00225, Kinesin, Kinesin motor domain.  
Length=326

 Score = 442 bits (1138),  Expect = 1e-145, Method: Composition-based stats.
 Identities = 170/352 (48%), Positives = 226/352 (64%), Gaps = 29/352 (8%)

Query  14   RVRPFNSRGIDRGAKCIVQMKGNQTILVPPPGADEKSRKAGGKGAVEGPKTFAFDRSYWS  73
            RVRP N R  +RG+  IV ++   +  V      E S            KTF FD+ +  
Sbjct  1    RVRPLNEREKERGSSVIVSVESVDSETV------ESSHLTN----KNRTKTFTFDKVFDP  50

Query  74   FDKNAPNYAGQDNLFADLGVPLLDNAFQGYNNCIFAYGQTGSGKSYSMMGYGKEYGVIPR  133
                    A Q++++ +   PL+++  +GYN  IFAYGQTGSGK+Y+M G  ++ G+IPR
Sbjct  51   E-------ATQEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGSDEQPGIIPR  103

Query  134  ICQEMFQRIAKMQEDKNLNCTVEVSYLEIYNERVRDLLNPS--NKGNLKVREHPSTGPYV  191
              +++F RI K +E      +V+VSYLEIYNE++RDLL+PS  NK  L++RE P  G YV
Sbjct  104  ALEDLFDRIQKTKE--RSEFSVKVSYLEIYNEKIRDLLSPSNKNKRKLRIREDPKKGVYV  161

Query  192  EDLAKLAVRSFEEIDHLMDEGNKARTVAATNMNETSSRSHAVFTLTLTQKRHDAETSMDT  251
            + L ++ V S EE+  L+  GNK RTVAAT MNE SSRSHA+FT+T+ Q+        ++
Sbjct  162  KGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGE-ES  220

Query  252  EKVSRISLVDLAGSERANSTG-ATGARLKEGAEINRSLSTLGRVIAALADVASGKKKNAS  310
             K  +++LVDLAGSERA+ TG A G RLKE A IN+SLS LG VI+ALAD      K + 
Sbjct  221  VKTGKLNLVDLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALAD------KKSK  274

Query  311  MVPYRDSILTWLLKDSLGGNSMTAMIAAISPADINFDETLSTLRYADSAKRI  362
             +PYRDS LT LL+DSLGGNS T MIA ISP+  N++ETLSTLR+A  AK I
Sbjct  275  HIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSSNYEETLSTLRFASRAKNI  326


>CDD:463599 pfam12473, DUF3694, Kinesin protein.  This domain family is found 
in eukaryotes, and is typically between 131 and 151 amino 
acids in length. The family is found in association with 
pfam00225, pfam00498. There is a single completely conserved 
residue W that may be functionally important.
Length=149

 Score = 199 bits (509),  Expect = 9e-60, Method: Composition-based stats.
 Identities = 73/123 (59%), Positives = 96/123 (78%), Gaps = 1/123 (1%)

Query  1173  EYLPVEVVQNNSLDAGTYQLHQGLQRRVLVSLTYNSTEGLPWDDLTNIRVGSVRLLDPWG  1232
             EY+PV V Q + LD GT+QLHQGLQRR++++LT++S + LPW+ + N+RVG VRLLD  G
Sbjct  1     EYVPVPVDQRSELDPGTFQLHQGLQRRIVITLTHSSGDELPWERVRNVRVGDVRLLDMKG  60

Query  1233  KIPDQDLQTPDVPLKFVQEPAVKDNADGTSNVTLVAQWDSSLHGSLLLDRVTADKYRVQV  1292
             ++PD D  TPDV LK + +P V+ NADGTS+ T+  QWDSSLH SLLL+RVTAD YRV +
Sbjct  61    RVPDSDS-TPDVSLKLLSKPVVRFNADGTSSYTIEGQWDSSLHNSLLLNRVTADGYRVYL  119

Query  1293  TVR  1295
             T+ 
Sbjct  120   TLA  122


>CDD:465047 pfam16183, Kinesin_assoc, Kinesin-associated.  
Length=177

 Score = 155 bits (394),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 68/176 (39%), Positives = 97/176 (55%), Gaps = 25/176 (14%)

Query  366  AVVNEDPNARMIRELKEELAQLRAKLGGGSTAGAAGGMPAEEYYPPDTP-----------  414
            AV+NEDPN ++IRELK+E+A+LR  L           +        +TP           
Sbjct  1    AVINEDPNNKLIRELKDEVARLRDLLYAQGLGDIIDTIAHPTKKRANTPAANASAATAAM  60

Query  415  -----------LEKQMVSIQKADGTITKV-SKAEIVEQLNQSEKLYKDLNQTWEEKLEKT  462
                       L  +  S+      I       E +E+L ++EK+  +LN+TWEEKL KT
Sbjct  61   AGASPSPSLSALSSRAASVSSLHERIMFTPGSEEAIERLKETEKIIAELNETWEEKLRKT  120

Query  463  ERIHREREAALEELGISIEK--GFVGLSTPKKMPHLVNLSDDPLLAECLVYNIKPG  516
            E I  EREA L E+G++I +  G +G+ +PKK PHLVNL++DPL++ECL+Y IK G
Sbjct  121  EAIRMEREALLAEMGVAIREDGGTLGVFSPKKTPHLVNLNEDPLMSECLLYYIKDG  176


>CDD:465274 pfam16796, Microtub_bd, Microtubule binding.  This motor homology 
domain binds microtubules and lacks an ATP-binding site.
Length=144

 Score = 81.1 bits (201),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 52/165 (32%), Positives = 79/165 (48%), Gaps = 40/165 (24%)

Query  7    GNIKVVVRVRPFNSRGIDRGAKCIVQMKGNQTILVPPPGADEKSRKAGGKGAVEGPKTFA  66
            GNI+V  RVRP         ++  +            P       K G K      K+F+
Sbjct  20   GNIRVFARVRPEL------LSEAQIDY----------PDETSSDGKIGSKN-----KSFS  58

Query  67   FDRSYWSFDKNAPNYAGQDNLFADLGVPLLDNAFQGYNNCIFAYGQTGSGKSYSMMGYGK  126
            FDR    F   +     Q+++F ++   L+ +   GYN CIFAYGQTGSG +  M     
Sbjct  59   FDRV---FPPESE----QEDVFQEISQ-LVQSCLDGYNVCIFAYGQTGSGSNDGM-----  105

Query  127  EYGVIPRICQEMFQRIAKMQEDKNLNCTVEVSYLEIYNERVRDLL  171
                IPR  +++F+ I+ ++  K    T+E+ ++EIYNE  +DLL
Sbjct  106  ----IPRAREQIFRFISSLK--KGWKYTIELQFVEIYNESSQDLL  144



Lambda      K        H        a         alpha
   0.315    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1647790200


Query= TCONS_00012879

Length=1632
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459720 pfam00225, Kinesin, Kinesin motor domain                   445     2e-144
CDD:463599 pfam12473, DUF3694, Kinesin protein. This domain famil...  237     7e-73 
CDD:465047 pfam16183, Kinesin_assoc, Kinesin-associated               156     5e-44 
CDD:465274 pfam16796, Microtub_bd, Microtubule binding. This moto...  82.7    8e-19 


>CDD:459720 pfam00225, Kinesin, Kinesin motor domain.  
Length=326

 Score = 445 bits (1146),  Expect = 2e-144, Method: Composition-based stats.
 Identities = 171/352 (49%), Positives = 227/352 (64%), Gaps = 29/352 (8%)

Query  14   RVRPFNSREIDRGAKCIVQMKGNQTILVPPPGADEKSRKAGGKGAVEGPKTFAFDRSYWS  73
            RVRP N RE +RG+  IV ++   +  V      E S            KTF FD+ +  
Sbjct  1    RVRPLNEREKERGSSVIVSVESVDSETV------ESSHLTN----KNRTKTFTFDKVFDP  50

Query  74   FDKNAPNYAGQDNLFADLGVPLLDNAFQGYNNCIFAYGQTGSGKSYSMMGYGKEYGVIPR  133
                    A Q++++ +   PL+++  +GYN  IFAYGQTGSGK+Y+M G  ++ G+IPR
Sbjct  51   E-------ATQEDVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGSDEQPGIIPR  103

Query  134  ICQEMFQRIAKMQEDKNLNCTVEVSYLEIYNERVRDLLNPS--NKGNLKVREHPSTGPYV  191
              +++F RI K +E      +V+VSYLEIYNE++RDLL+PS  NK  L++RE P  G YV
Sbjct  104  ALEDLFDRIQKTKE--RSEFSVKVSYLEIYNEKIRDLLSPSNKNKRKLRIREDPKKGVYV  161

Query  192  EDLAKLAVRSFEEIDHLMDEGNKARTVAATNMNETSSRSHAVFTLTLTQKRHDAETSMDT  251
            + L ++ V S EE+  L+  GNK RTVAAT MNE SSRSHA+FT+T+ Q+        ++
Sbjct  162  KGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGE-ES  220

Query  252  EKVSRISLVDLAGSERANSTG-ATGARLKEGAEINRSLSTLGRVIAALADVASGKKKNAS  310
             K  +++LVDLAGSERA+ TG A G RLKE A IN+SLS LG VI+ALAD      K + 
Sbjct  221  VKTGKLNLVDLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALAD------KKSK  274

Query  311  MVPYRDSILTWLLKDSLGGNSMTAMIAAISPADINFDETLSTLRYADSAKRI  362
             +PYRDS LT LL+DSLGGNS T MIA ISP+  N++ETLSTLR+A  AK I
Sbjct  275  HIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSSNYEETLSTLRFASRAKNI  326


>CDD:463599 pfam12473, DUF3694, Kinesin protein.  This domain family is found 
in eukaryotes, and is typically between 131 and 151 amino 
acids in length. The family is found in association with 
pfam00225, pfam00498. There is a single completely conserved 
residue W that may be functionally important.
Length=149

 Score = 237 bits (607),  Expect = 7e-73, Method: Composition-based stats.
 Identities = 84/150 (56%), Positives = 112/150 (75%), Gaps = 1/150 (1%)

Query  1173  EYLPVEVVQNNSLDAGTYQLHQGLQRRVLVSLTYNSTEGLPWDDLTNIRVGSVRLLDPWG  1232
             EY+PV V Q + LD GT+QLHQGLQRR++++LT++S + LPW+ + N+RVG VRLLD  G
Sbjct  1     EYVPVPVDQRSELDPGTFQLHQGLQRRIVITLTHSSGDELPWERVRNVRVGDVRLLDMKG  60

Query  1233  KIPDQDLQTPDVPLKFVQEPAVKDNADGTSNVTLVAQWDSSLHGSLLLDRVTADKYRVQV  1292
             ++PD D  TPDV LK + +P V+ NADGTS+ T+  QWDSSLH SLLL+RVTAD YRV +
Sbjct  61    RVPDSDS-TPDVSLKLLSKPVVRFNADGTSSYTIEGQWDSSLHNSLLLNRVTADGYRVYL  119

Query  1293  TVRWDLVSSRLQDPVPFEVDLTLQIQGRTY  1322
             T+ WD+VS +  +PV F +D  +QI  R  
Sbjct  120   TLAWDVVSEKCAEPVRFSMDTAVQIYPRDE  149


>CDD:465047 pfam16183, Kinesin_assoc, Kinesin-associated.  
Length=177

 Score = 156 bits (395),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 68/176 (39%), Positives = 97/176 (55%), Gaps = 25/176 (14%)

Query  366  AVVNEDPNARMIRELKEELAQLRAKLGGGSTAGAAGGMPAEEYYPPDTP-----------  414
            AV+NEDPN ++IRELK+E+A+LR  L           +        +TP           
Sbjct  1    AVINEDPNNKLIRELKDEVARLRDLLYAQGLGDIIDTIAHPTKKRANTPAANASAATAAM  60

Query  415  -----------LEKQMVSIQKADGTITKV-SKAEIVEQLNQSEKLYKDLNQTWEEKLEKT  462
                       L  +  S+      I       E +E+L ++EK+  +LN+TWEEKL KT
Sbjct  61   AGASPSPSLSALSSRAASVSSLHERIMFTPGSEEAIERLKETEKIIAELNETWEEKLRKT  120

Query  463  ERIHREREAALEELGISIEK--GFVGLSTPKKMPHLVNLSDDPLLAECLVYNIKPG  516
            E I  EREA L E+G++I +  G +G+ +PKK PHLVNL++DPL++ECL+Y IK G
Sbjct  121  EAIRMEREALLAEMGVAIREDGGTLGVFSPKKTPHLVNLNEDPLMSECLLYYIKDG  176


>CDD:465274 pfam16796, Microtub_bd, Microtubule binding.  This motor homology 
domain binds microtubules and lacks an ATP-binding site.
Length=144

 Score = 82.7 bits (205),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 40/165 (24%)

Query  7    GNIKVVVRVRPFNSREIDRGAKCIVQMKGNQTILVPPPGADEKSRKAGGKGAVEGPKTFA  66
            GNI+V  RVRP    E        +            P       K G K      K+F+
Sbjct  20   GNIRVFARVRPELLSE------AQIDY----------PDETSSDGKIGSKN-----KSFS  58

Query  67   FDRSYWSFDKNAPNYAGQDNLFADLGVPLLDNAFQGYNNCIFAYGQTGSGKSYSMMGYGK  126
            FDR    F   +     Q+++F ++   L+ +   GYN CIFAYGQTGSG +  M     
Sbjct  59   FDRV---FPPESE----QEDVFQEISQ-LVQSCLDGYNVCIFAYGQTGSGSNDGM-----  105

Query  127  EYGVIPRICQEMFQRIAKMQEDKNLNCTVEVSYLEIYNERVRDLL  171
                IPR  +++F+ I+ ++  K    T+E+ ++EIYNE  +DLL
Sbjct  106  ----IPRAREQIFRFISSLK--KGWKYTIELQFVEIYNESSQDLL  144



Lambda      K        H        a         alpha
   0.315    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0637    0.140     1.90     42.6     43.6 

Effective search space used: 2080222746


Query= TCONS_00018519

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:310354 pfam05686, Glyco_transf_90, Glycosyl transferase famil...  109     1e-26


>CDD:310354 pfam05686, Glyco_transf_90, Glycosyl transferase family 90.  
This family of glycosyl transferases are specifically (mannosyl) 
glucuronoxylomannan/galactoxylomannan -beta 1,2-xylosyltransferases, 
EC:2.4.2.-.
Length=396

 Score = 109 bits (273),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 62/264 (23%), Positives = 113/264 (43%), Gaps = 41/264 (16%)

Query  165  NLPDIEFVLTADDFSNV-----------PGPVWSYSKRDEDESIWLMPDFGYWAWPEVKV  213
             LPD+E +    D+  V           P P++SY   D+   I + PD+ +W WPEV +
Sbjct  78   RLPDLELMFNCGDWPVVKKRDYRGPNANPPPLFSYCGDDDTLDI-VFPDWSFWGWPEVNI  136

Query  214  GPY----KDIRRRIAAVDEGEVRPDGSLVPRMEFREKKKQLVWRGSVATNPELRGKLLK-  268
            G +    KD++                   R+++ +++    WRG+  +  E R +L+K 
Sbjct  137  GRWDLLRKDLKEGNT---------------RVKWEDREPYAYWRGN-PSVAETRLELVKC  180

Query  269  -AAQGRSW-ASIRVIDWDNENDVRYNLLPMEEHCRYMFLAHTEGRSFSGRGKYLLNCRSV  326
              +    W A +   DWD E    +    + + C + +  + EG ++S   KY+L C S+
Sbjct  181  NRSNPEDWDARLTNQDWDTEYRPGFKHSSLVDQCTHKYKIYIEGVAWSVSLKYILACDSL  240

Query  327  VVSHKLVWREAHHAALVASGPEANYVEV--ERDFSDLDRKISFLIDNPEIAEQIADNAVR  384
            V+     + +  +  L    P  +Y  +  + D  DL   + +   + + A++IA+    
Sbjct  241  VLHVGPEYYDFFYRGLK---PWVHYWPIKSDDDCRDLKEAVDWGNAHDDEAQKIAERGSE  297

Query  385  TFRDRYLTPAAESCYWRHLIRQYA  408
             F    L       Y  HL+ +YA
Sbjct  298  -FIRENLKMDDVYDYMFHLLTEYA  320



Lambda      K        H        a         alpha
   0.320    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00012880

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:310354 pfam05686, Glyco_transf_90, Glycosyl transferase famil...  108     1e-26


>CDD:310354 pfam05686, Glyco_transf_90, Glycosyl transferase family 90.  
This family of glycosyl transferases are specifically (mannosyl) 
glucuronoxylomannan/galactoxylomannan -beta 1,2-xylosyltransferases, 
EC:2.4.2.-.
Length=396

 Score = 108 bits (272),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 62/264 (23%), Positives = 113/264 (43%), Gaps = 41/264 (16%)

Query  156  NLPDIEFVLTADDFSNV-----------PGPVWSYSKRDEDESIWLMPDFGYWAWPEVKV  204
             LPD+E +    D+  V           P P++SY   D+   I + PD+ +W WPEV +
Sbjct  78   RLPDLELMFNCGDWPVVKKRDYRGPNANPPPLFSYCGDDDTLDI-VFPDWSFWGWPEVNI  136

Query  205  GPY----KDIRRRIAAVDEGEVRPDGSLVPRMEFREKKKQLVWRGSVATNPELRGKLLK-  259
            G +    KD++                   R+++ +++    WRG+  +  E R +L+K 
Sbjct  137  GRWDLLRKDLKEGNT---------------RVKWEDREPYAYWRGN-PSVAETRLELVKC  180

Query  260  -AAQGRSW-ASIRVIDWDNENDVRYNLLPMEEHCRYMFLAHTEGRSFSGRGKYLLNCRSV  317
              +    W A +   DWD E    +    + + C + +  + EG ++S   KY+L C S+
Sbjct  181  NRSNPEDWDARLTNQDWDTEYRPGFKHSSLVDQCTHKYKIYIEGVAWSVSLKYILACDSL  240

Query  318  VVSHKLVWREAHHAALVASGPEANYVEV--ERDFSDLDRKISFLIDNPEIAEQIADNAVR  375
            V+     + +  +  L    P  +Y  +  + D  DL   + +   + + A++IA+    
Sbjct  241  VLHVGPEYYDFFYRGLK---PWVHYWPIKSDDDCRDLKEAVDWGNAHDDEAQKIAERGSE  297

Query  376  TFRDRYLTPAAESCYWRHLIRQYA  399
             F    L       Y  HL+ +YA
Sbjct  298  -FIRENLKMDDVYDYMFHLLTEYA  320



Lambda      K        H        a         alpha
   0.320    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 529127880


Query= TCONS_00018520

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00012882

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396300 pfam01663, Phosphodiest, Type I phosphodiesterase / nu...  290     1e-96


>CDD:396300 pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide 
pyrophosphatase.  This family consists of phosphodiesterases, 
including human plasma-cell membrane glycoprotein PC-1 / 
alkaline phosphodiesterase i / nucleotide pyrophosphatase (nppase). 
These enzymes catalyze the cleavage of phosphodiester 
and phosphosulfate bonds in NAD, deoxynucleotides and nucleotide 
sugars. Also in this family is ATX an autotaxin, tumor 
cell motility-stimulating protein which exhibits type I phosphodiesterases 
activity. The alignment encompasses the active 
site. Also present with in this family is 60-kDa Ca2+-ATPase 
form F. odoratum.
Length=343

 Score = 290 bits (745),  Expect = 1e-96, Method: Composition-based stats.
 Identities = 115/323 (36%), Positives = 167/323 (52%), Gaps = 33/323 (10%)

Query  1    MLPSFPSVTFPNHFTLVTGLYPESHGIVSNTFWDPALKENFHYTNQSISMQPKWWNAEPL  60
            + P FP++TFPNH+TLVTGLYP SHGIV NTF+DP   E   +   S    P+WW  EP+
Sbjct  36   LTPVFPTLTFPNHYTLVTGLYPGSHGIVGNTFYDPKTGEYLVFV-ISDPEDPRWWQGEPI  94

Query  61   WMTAEKHGLKTGIHMWPGSEAHI---GGVDPTFL-DKYNGSEKLSRKVDRIL--ELLDLT  114
            W TA K G++     WPGSE       G  P +L D YN S     +VD  +    LDL 
Sbjct  95   WDTAAKAGVRAAALFWPGSEVDYSTYYGTPPRYLKDDYNNSVPFEDRVDTAVLQTWLDLP  154

Query  115  GAEEESLMVPERPQFIAAYVPDVDADGHKFGPNSTEIRHTISQVDSMLAELMSGLRSRNL  174
             A+       ERP  +  Y+ + D  GH++GP+S E+   + +VD  + +L+  L  R L
Sbjct  155  FADV----AAERPDLLLVYLEEPDYAGHRYGPDSPEVEDALRRVDRAIGDLLEALDERGL  210

Query  175  TDIVNLIIVSDHGMATTATERLIQLDDFIEL-GLVDRIDGWPLRGIRPR-----------  222
             +  N+I+VSDHGM   + +++I L+D++   GL+  +DG P+  I P+           
Sbjct  211  FEDTNVIVVSDHGMTPVSDDKVIFLNDYLREKGLLHLVDGGPVVAIYPKARELGHVPPGE  270

Query  223  KPEDLEVLQKQLENLTLQYPQAVEVYTRETMPERYHFSRNDRIAPLWVIPKTGWAIVERP  282
              E    L+++L  L +Q  + + VY +E +P R H+  N RI  L ++   GW I  + 
Sbjct  271  VEEVYAELKEKLLGLRIQDGEHLAVYLKEEIPGRLHY--NPRIPDLVLVADPGWYITGKD  328

Query  283  DFDAQEAIRTGRVYHPKGVHGYD  305
              D              G HGYD
Sbjct  329  GGDK--------EAAIHGTHGYD  343



Lambda      K        H        a         alpha
   0.322    0.137    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00018521

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396300 pfam01663, Phosphodiest, Type I phosphodiesterase / nu...  290     1e-96


>CDD:396300 pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide 
pyrophosphatase.  This family consists of phosphodiesterases, 
including human plasma-cell membrane glycoprotein PC-1 / 
alkaline phosphodiesterase i / nucleotide pyrophosphatase (nppase). 
These enzymes catalyze the cleavage of phosphodiester 
and phosphosulfate bonds in NAD, deoxynucleotides and nucleotide 
sugars. Also in this family is ATX an autotaxin, tumor 
cell motility-stimulating protein which exhibits type I phosphodiesterases 
activity. The alignment encompasses the active 
site. Also present with in this family is 60-kDa Ca2+-ATPase 
form F. odoratum.
Length=343

 Score = 290 bits (745),  Expect = 1e-96, Method: Composition-based stats.
 Identities = 115/323 (36%), Positives = 167/323 (52%), Gaps = 33/323 (10%)

Query  1    MLPSFPSVTFPNHFTLVTGLYPESHGIVSNTFWDPALKENFHYTNQSISMQPKWWNAEPL  60
            + P FP++TFPNH+TLVTGLYP SHGIV NTF+DP   E   +   S    P+WW  EP+
Sbjct  36   LTPVFPTLTFPNHYTLVTGLYPGSHGIVGNTFYDPKTGEYLVFV-ISDPEDPRWWQGEPI  94

Query  61   WMTAEKHGLKTGIHMWPGSEAHI---GGVDPTFL-DKYNGSEKLSRKVDRIL--ELLDLT  114
            W TA K G++     WPGSE       G  P +L D YN S     +VD  +    LDL 
Sbjct  95   WDTAAKAGVRAAALFWPGSEVDYSTYYGTPPRYLKDDYNNSVPFEDRVDTAVLQTWLDLP  154

Query  115  GAEEESLMVPERPQFIAAYVPDVDADGHKFGPNSTEIRHTISQVDSMLAELMSGLRSRNL  174
             A+       ERP  +  Y+ + D  GH++GP+S E+   + +VD  + +L+  L  R L
Sbjct  155  FADV----AAERPDLLLVYLEEPDYAGHRYGPDSPEVEDALRRVDRAIGDLLEALDERGL  210

Query  175  TDIVNLIIVSDHGMATTATERLIQLDDFIEL-GLVDRIDGWPLRGIRPR-----------  222
             +  N+I+VSDHGM   + +++I L+D++   GL+  +DG P+  I P+           
Sbjct  211  FEDTNVIVVSDHGMTPVSDDKVIFLNDYLREKGLLHLVDGGPVVAIYPKARELGHVPPGE  270

Query  223  KPEDLEVLQKQLENLTLQYPQAVEVYTRETMPERYHFSRNDRIAPLWVIPKTGWAIVERP  282
              E    L+++L  L +Q  + + VY +E +P R H+  N RI  L ++   GW I  + 
Sbjct  271  VEEVYAELKEKLLGLRIQDGEHLAVYLKEEIPGRLHY--NPRIPDLVLVADPGWYITGKD  328

Query  283  DFDAQEAIRTGRVYHPKGVHGYD  305
              D              G HGYD
Sbjct  329  GGDK--------EAAIHGTHGYD  343



Lambda      K        H        a         alpha
   0.322    0.137    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00018522

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396300 pfam01663, Phosphodiest, Type I phosphodiesterase / nu...  290     1e-96


>CDD:396300 pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide 
pyrophosphatase.  This family consists of phosphodiesterases, 
including human plasma-cell membrane glycoprotein PC-1 / 
alkaline phosphodiesterase i / nucleotide pyrophosphatase (nppase). 
These enzymes catalyze the cleavage of phosphodiester 
and phosphosulfate bonds in NAD, deoxynucleotides and nucleotide 
sugars. Also in this family is ATX an autotaxin, tumor 
cell motility-stimulating protein which exhibits type I phosphodiesterases 
activity. The alignment encompasses the active 
site. Also present with in this family is 60-kDa Ca2+-ATPase 
form F. odoratum.
Length=343

 Score = 290 bits (745),  Expect = 1e-96, Method: Composition-based stats.
 Identities = 115/323 (36%), Positives = 167/323 (52%), Gaps = 33/323 (10%)

Query  1    MLPSFPSVTFPNHFTLVTGLYPESHGIVSNTFWDPALKENFHYTNQSISMQPKWWNAEPL  60
            + P FP++TFPNH+TLVTGLYP SHGIV NTF+DP   E   +   S    P+WW  EP+
Sbjct  36   LTPVFPTLTFPNHYTLVTGLYPGSHGIVGNTFYDPKTGEYLVFV-ISDPEDPRWWQGEPI  94

Query  61   WMTAEKHGLKTGIHMWPGSEAHI---GGVDPTFL-DKYNGSEKLSRKVDRIL--ELLDLT  114
            W TA K G++     WPGSE       G  P +L D YN S     +VD  +    LDL 
Sbjct  95   WDTAAKAGVRAAALFWPGSEVDYSTYYGTPPRYLKDDYNNSVPFEDRVDTAVLQTWLDLP  154

Query  115  GAEEESLMVPERPQFIAAYVPDVDADGHKFGPNSTEIRHTISQVDSMLAELMSGLRSRNL  174
             A+       ERP  +  Y+ + D  GH++GP+S E+   + +VD  + +L+  L  R L
Sbjct  155  FADV----AAERPDLLLVYLEEPDYAGHRYGPDSPEVEDALRRVDRAIGDLLEALDERGL  210

Query  175  TDIVNLIIVSDHGMATTATERLIQLDDFIEL-GLVDRIDGWPLRGIRPR-----------  222
             +  N+I+VSDHGM   + +++I L+D++   GL+  +DG P+  I P+           
Sbjct  211  FEDTNVIVVSDHGMTPVSDDKVIFLNDYLREKGLLHLVDGGPVVAIYPKARELGHVPPGE  270

Query  223  KPEDLEVLQKQLENLTLQYPQAVEVYTRETMPERYHFSRNDRIAPLWVIPKTGWAIVERP  282
              E    L+++L  L +Q  + + VY +E +P R H+  N RI  L ++   GW I  + 
Sbjct  271  VEEVYAELKEKLLGLRIQDGEHLAVYLKEEIPGRLHY--NPRIPDLVLVADPGWYITGKD  328

Query  283  DFDAQEAIRTGRVYHPKGVHGYD  305
              D              G HGYD
Sbjct  329  GGDK--------EAAIHGTHGYD  343



Lambda      K        H        a         alpha
   0.322    0.137    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00018523

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396300 pfam01663, Phosphodiest, Type I phosphodiesterase / nu...  290     1e-96


>CDD:396300 pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide 
pyrophosphatase.  This family consists of phosphodiesterases, 
including human plasma-cell membrane glycoprotein PC-1 / 
alkaline phosphodiesterase i / nucleotide pyrophosphatase (nppase). 
These enzymes catalyze the cleavage of phosphodiester 
and phosphosulfate bonds in NAD, deoxynucleotides and nucleotide 
sugars. Also in this family is ATX an autotaxin, tumor 
cell motility-stimulating protein which exhibits type I phosphodiesterases 
activity. The alignment encompasses the active 
site. Also present with in this family is 60-kDa Ca2+-ATPase 
form F. odoratum.
Length=343

 Score = 290 bits (745),  Expect = 1e-96, Method: Composition-based stats.
 Identities = 115/323 (36%), Positives = 167/323 (52%), Gaps = 33/323 (10%)

Query  1    MLPSFPSVTFPNHFTLVTGLYPESHGIVSNTFWDPALKENFHYTNQSISMQPKWWNAEPL  60
            + P FP++TFPNH+TLVTGLYP SHGIV NTF+DP   E   +   S    P+WW  EP+
Sbjct  36   LTPVFPTLTFPNHYTLVTGLYPGSHGIVGNTFYDPKTGEYLVFV-ISDPEDPRWWQGEPI  94

Query  61   WMTAEKHGLKTGIHMWPGSEAHI---GGVDPTFL-DKYNGSEKLSRKVDRIL--ELLDLT  114
            W TA K G++     WPGSE       G  P +L D YN S     +VD  +    LDL 
Sbjct  95   WDTAAKAGVRAAALFWPGSEVDYSTYYGTPPRYLKDDYNNSVPFEDRVDTAVLQTWLDLP  154

Query  115  GAEEESLMVPERPQFIAAYVPDVDADGHKFGPNSTEIRHTISQVDSMLAELMSGLRSRNL  174
             A+       ERP  +  Y+ + D  GH++GP+S E+   + +VD  + +L+  L  R L
Sbjct  155  FADV----AAERPDLLLVYLEEPDYAGHRYGPDSPEVEDALRRVDRAIGDLLEALDERGL  210

Query  175  TDIVNLIIVSDHGMATTATERLIQLDDFIEL-GLVDRIDGWPLRGIRPR-----------  222
             +  N+I+VSDHGM   + +++I L+D++   GL+  +DG P+  I P+           
Sbjct  211  FEDTNVIVVSDHGMTPVSDDKVIFLNDYLREKGLLHLVDGGPVVAIYPKARELGHVPPGE  270

Query  223  KPEDLEVLQKQLENLTLQYPQAVEVYTRETMPERYHFSRNDRIAPLWVIPKTGWAIVERP  282
              E    L+++L  L +Q  + + VY +E +P R H+  N RI  L ++   GW I  + 
Sbjct  271  VEEVYAELKEKLLGLRIQDGEHLAVYLKEEIPGRLHY--NPRIPDLVLVADPGWYITGKD  328

Query  283  DFDAQEAIRTGRVYHPKGVHGYD  305
              D              G HGYD
Sbjct  329  GGDK--------EAAIHGTHGYD  343



Lambda      K        H        a         alpha
   0.322    0.137    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00012883

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00012884

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00012885

Length=1045


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1343666324


Query= TCONS_00018525

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.297    0.111    0.279    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00012886

Length=474


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00012887

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00012888

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00012889

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402326 pfam10637, Ofd1_CTDD, Oxoglutarate and iron-dependent ...  333     3e-112
CDD:433386 pfam13661, 2OG-FeII_Oxy_4, 2OG-Fe(II) oxygenase superf...  145     3e-42 
CDD:463943 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superf...  83.6    4e-20 


>CDD:402326 pfam10637, Ofd1_CTDD, Oxoglutarate and iron-dependent oxygenase 
degradation C-term.  Ofd1 is a prolyl 4-hydroxylase-like 
2-oxoglutarate-Fe(II) dioxygenase that accelerates the degradation 
of Sre1N in the presence of oxygen. The domain is conserved 
from yeasts to humans. Yeast Sre1 is the orthologue of 
mammalian sterol regulatory element binding protein (SREBP), 
and it responds to changes in oxygen-dependent sterol synthesis 
as an indirect measure of oxygen availability. However, 
unlike the prolyl 4-hydroxylases that regulate mammalian 
hypoxia-inducible factor, Ofd1 uses multiple domains to regulate 
Sre1N degradation by oxygen; the Ofd1 N-terminal dioxygenase 
domain is required for oxygen sensing and this Ofd1 C-terminal 
domain accelerates Sre1N degradation in yeasts.
Length=255

 Score = 333 bits (855),  Expect = 3e-112, Method: Composition-based stats.
 Identities = 147/286 (51%), Positives = 177/286 (62%), Gaps = 44/286 (15%)

Query  286  DLNFLLQYIAPSYLTPDIAEEMSDTFSNESSLNLDRFLSDKFAARVRAYIEEQEKQ---E  342
            DL FL +YI P YLTP+  EE+ +TF  ESSL L+ FL+++FA  +R Y+E Q+ +   E
Sbjct  2    DLEFLSKYINPEYLTPETVEELQETFEEESSLELEDFLNEEFADLLREYLESQDSELEKE  61

Query  343  LPKSSDEIQAKTEWTVARPPHKQRYLFQQHGTATSDQK-----TPIQELLNDLFPSLAFR  397
            LP+SS EI+A   W VA PPHKQRYL+     A   Q      +P++ELL  LF S AFR
Sbjct  62   LPQSSKEIEA--PWKVAGPPHKQRYLYLDGEEARDLQNEKDIESPLKELL-QLFKSKAFR  118

Query  398  KWLALITGAEHITSYDLLARRFRRGQDYTLASGYDGEE-PRLEFTLGLTPTPGWEKETDE  456
            KWLAL+TG   +TS  +LARRFR GQDYTLA+  DGEE PRLE TL LTPT GW      
Sbjct  119  KWLALLTGL-VLTSEQILARRFRPGQDYTLATDTDGEELPRLEVTLCLTPTKGW------  171

Query  457  DEEMEDEDGEAQEKFKKKETASADEPAVGGYEIYMAGDDEDDGDAAIYKSAAADEDDGIL  516
                                   +   VGGYE+YMAGDD++D DAAIY+S   DEDD +L
Sbjct  172  -----------------------ESGEVGGYELYMAGDDDEDDDAAIYRSD--DEDDSVL  206

Query  517  FSTAAGWNRLSIVLRDSGTLKFVKYVSAAANGDRWDITGEMGVDFG  562
             S    WN LS+VLRD G LKFVKYVS  A G RWDI+ E GV   
Sbjct  207  LSIPPSWNSLSLVLRDEGVLKFVKYVSRNAKGSRWDISCEWGVKSE  252


>CDD:433386 pfam13661, 2OG-FeII_Oxy_4, 2OG-Fe(II) oxygenase superfamily. 
 This family contains members of the 2-oxoglutarate (2OG) and 
Fe(II)-dependent oxygenase superfamily.
Length=98

 Score = 145 bits (367),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 51/119 (43%), Positives = 69/119 (58%), Gaps = 21/119 (18%)

Query  99   MAINIYNEGCHLLCHDDVIGSRRLSYILYLTDPDTPWQSEWGGALRLYPTTTKKDINGED  158
            M+ + Y +G  LLCHDDVI  RR+++ILYL +    W+ + GGAL LY T        + 
Sbjct  1    MSCSRYEKGDFLLCHDDVIEGRRIAFILYLVE---NWKPDDGGALDLYDT--------DG  49

Query  159  VLVPSPDFSLSIPPAFNQLSFFTVQPGESFHDVEEVYHPKEGEDKSAKRVRMAISGWFH  217
               P+ D + SI P +N+L FF V PG SFH V EV          A++ R++ISGWFH
Sbjct  50   HGQPA-DITKSIVPTWNKLVFFEVSPGHSFHQVAEVV---------AEKPRLSISGWFH  98


>CDD:463943 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. 
 This family contains members of the 2-oxoglutarate (2OG) and 
Fe(II)-dependent oxygenase superfamily.
Length=94

 Score = 83.6 bits (207),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 43/125 (34%), Gaps = 37/125 (30%)

Query  99   MAINIYNEGCHLLCHDDVI------GSRRLSYILYLTDPDTPWQSEWGGALRLYPTTTKK  152
            + +  Y +G     H D        G RRL+ +LYL D    W+ E GG L LY      
Sbjct  1    LQLARYGDGGFYKPHLDFFEGAEGGGQRRLTVVLYLND----WEEEEGGELVLYD-----  51

Query  153  DINGEDVLVPSPDFSLSIPPAFNQLSFFTVQPGESFHDVEEVYHPKEGEDKSAKRVRMAI  212
                        D    I P   +L  F      S H+V  V              R +I
Sbjct  52   -----------GDGVEDIKPKKGRLVLFPSSE-LSLHEVLPVT----------GGERWSI  89

Query  213  SGWFH  217
            +GWF 
Sbjct  90   TGWFR  94



Lambda      K        H        a         alpha
   0.313    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00012890

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402326 pfam10637, Ofd1_CTDD, Oxoglutarate and iron-dependent ...  333     3e-112
CDD:433386 pfam13661, 2OG-FeII_Oxy_4, 2OG-Fe(II) oxygenase superf...  145     3e-42 
CDD:463943 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superf...  83.6    4e-20 


>CDD:402326 pfam10637, Ofd1_CTDD, Oxoglutarate and iron-dependent oxygenase 
degradation C-term.  Ofd1 is a prolyl 4-hydroxylase-like 
2-oxoglutarate-Fe(II) dioxygenase that accelerates the degradation 
of Sre1N in the presence of oxygen. The domain is conserved 
from yeasts to humans. Yeast Sre1 is the orthologue of 
mammalian sterol regulatory element binding protein (SREBP), 
and it responds to changes in oxygen-dependent sterol synthesis 
as an indirect measure of oxygen availability. However, 
unlike the prolyl 4-hydroxylases that regulate mammalian 
hypoxia-inducible factor, Ofd1 uses multiple domains to regulate 
Sre1N degradation by oxygen; the Ofd1 N-terminal dioxygenase 
domain is required for oxygen sensing and this Ofd1 C-terminal 
domain accelerates Sre1N degradation in yeasts.
Length=255

 Score = 333 bits (855),  Expect = 3e-112, Method: Composition-based stats.
 Identities = 147/286 (51%), Positives = 177/286 (62%), Gaps = 44/286 (15%)

Query  286  DLNFLLQYIAPSYLTPDIAEEMSDTFSNESSLNLDRFLSDKFAARVRAYIEEQEKQ---E  342
            DL FL +YI P YLTP+  EE+ +TF  ESSL L+ FL+++FA  +R Y+E Q+ +   E
Sbjct  2    DLEFLSKYINPEYLTPETVEELQETFEEESSLELEDFLNEEFADLLREYLESQDSELEKE  61

Query  343  LPKSSDEIQAKTEWTVARPPHKQRYLFQQHGTATSDQK-----TPIQELLNDLFPSLAFR  397
            LP+SS EI+A   W VA PPHKQRYL+     A   Q      +P++ELL  LF S AFR
Sbjct  62   LPQSSKEIEA--PWKVAGPPHKQRYLYLDGEEARDLQNEKDIESPLKELL-QLFKSKAFR  118

Query  398  KWLALITGAEHITSYDLLARRFRRGQDYTLASGYDGEE-PRLEFTLGLTPTPGWEKETDE  456
            KWLAL+TG   +TS  +LARRFR GQDYTLA+  DGEE PRLE TL LTPT GW      
Sbjct  119  KWLALLTGL-VLTSEQILARRFRPGQDYTLATDTDGEELPRLEVTLCLTPTKGW------  171

Query  457  DEEMEDEDGEAQEKFKKKETASADEPAVGGYEIYMAGDDEDDGDAAIYKSAAADEDDGIL  516
                                   +   VGGYE+YMAGDD++D DAAIY+S   DEDD +L
Sbjct  172  -----------------------ESGEVGGYELYMAGDDDEDDDAAIYRSD--DEDDSVL  206

Query  517  FSTAAGWNRLSIVLRDSGTLKFVKYVSAAANGDRWDITGEMGVDFG  562
             S    WN LS+VLRD G LKFVKYVS  A G RWDI+ E GV   
Sbjct  207  LSIPPSWNSLSLVLRDEGVLKFVKYVSRNAKGSRWDISCEWGVKSE  252


>CDD:433386 pfam13661, 2OG-FeII_Oxy_4, 2OG-Fe(II) oxygenase superfamily. 
 This family contains members of the 2-oxoglutarate (2OG) and 
Fe(II)-dependent oxygenase superfamily.
Length=98

 Score = 145 bits (367),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 51/119 (43%), Positives = 69/119 (58%), Gaps = 21/119 (18%)

Query  99   MAINIYNEGCHLLCHDDVIGSRRLSYILYLTDPDTPWQSEWGGALRLYPTTTKKDINGED  158
            M+ + Y +G  LLCHDDVI  RR+++ILYL +    W+ + GGAL LY T        + 
Sbjct  1    MSCSRYEKGDFLLCHDDVIEGRRIAFILYLVE---NWKPDDGGALDLYDT--------DG  49

Query  159  VLVPSPDFSLSIPPAFNQLSFFTVQPGESFHDVEEVYHPKEGEDKSAKRVRMAISGWFH  217
               P+ D + SI P +N+L FF V PG SFH V EV          A++ R++ISGWFH
Sbjct  50   HGQPA-DITKSIVPTWNKLVFFEVSPGHSFHQVAEVV---------AEKPRLSISGWFH  98


>CDD:463943 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. 
 This family contains members of the 2-oxoglutarate (2OG) and 
Fe(II)-dependent oxygenase superfamily.
Length=94

 Score = 83.6 bits (207),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 43/125 (34%), Gaps = 37/125 (30%)

Query  99   MAINIYNEGCHLLCHDDVI------GSRRLSYILYLTDPDTPWQSEWGGALRLYPTTTKK  152
            + +  Y +G     H D        G RRL+ +LYL D    W+ E GG L LY      
Sbjct  1    LQLARYGDGGFYKPHLDFFEGAEGGGQRRLTVVLYLND----WEEEEGGELVLYD-----  51

Query  153  DINGEDVLVPSPDFSLSIPPAFNQLSFFTVQPGESFHDVEEVYHPKEGEDKSAKRVRMAI  212
                        D    I P   +L  F      S H+V  V              R +I
Sbjct  52   -----------GDGVEDIKPKKGRLVLFPSSE-LSLHEVLPVT----------GGERWSI  89

Query  213  SGWFH  217
            +GWF 
Sbjct  90   TGWFR  94



Lambda      K        H        a         alpha
   0.313    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00012891

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402326 pfam10637, Ofd1_CTDD, Oxoglutarate and iron-dependent ...  333     3e-112
CDD:433386 pfam13661, 2OG-FeII_Oxy_4, 2OG-Fe(II) oxygenase superf...  145     3e-42 
CDD:463943 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superf...  83.6    4e-20 


>CDD:402326 pfam10637, Ofd1_CTDD, Oxoglutarate and iron-dependent oxygenase 
degradation C-term.  Ofd1 is a prolyl 4-hydroxylase-like 
2-oxoglutarate-Fe(II) dioxygenase that accelerates the degradation 
of Sre1N in the presence of oxygen. The domain is conserved 
from yeasts to humans. Yeast Sre1 is the orthologue of 
mammalian sterol regulatory element binding protein (SREBP), 
and it responds to changes in oxygen-dependent sterol synthesis 
as an indirect measure of oxygen availability. However, 
unlike the prolyl 4-hydroxylases that regulate mammalian 
hypoxia-inducible factor, Ofd1 uses multiple domains to regulate 
Sre1N degradation by oxygen; the Ofd1 N-terminal dioxygenase 
domain is required for oxygen sensing and this Ofd1 C-terminal 
domain accelerates Sre1N degradation in yeasts.
Length=255

 Score = 333 bits (855),  Expect = 3e-112, Method: Composition-based stats.
 Identities = 147/286 (51%), Positives = 177/286 (62%), Gaps = 44/286 (15%)

Query  286  DLNFLLQYIAPSYLTPDIAEEMSDTFSNESSLNLDRFLSDKFAARVRAYIEEQEKQ---E  342
            DL FL +YI P YLTP+  EE+ +TF  ESSL L+ FL+++FA  +R Y+E Q+ +   E
Sbjct  2    DLEFLSKYINPEYLTPETVEELQETFEEESSLELEDFLNEEFADLLREYLESQDSELEKE  61

Query  343  LPKSSDEIQAKTEWTVARPPHKQRYLFQQHGTATSDQK-----TPIQELLNDLFPSLAFR  397
            LP+SS EI+A   W VA PPHKQRYL+     A   Q      +P++ELL  LF S AFR
Sbjct  62   LPQSSKEIEA--PWKVAGPPHKQRYLYLDGEEARDLQNEKDIESPLKELL-QLFKSKAFR  118

Query  398  KWLALITGAEHITSYDLLARRFRRGQDYTLASGYDGEE-PRLEFTLGLTPTPGWEKETDE  456
            KWLAL+TG   +TS  +LARRFR GQDYTLA+  DGEE PRLE TL LTPT GW      
Sbjct  119  KWLALLTGL-VLTSEQILARRFRPGQDYTLATDTDGEELPRLEVTLCLTPTKGW------  171

Query  457  DEEMEDEDGEAQEKFKKKETASADEPAVGGYEIYMAGDDEDDGDAAIYKSAAADEDDGIL  516
                                   +   VGGYE+YMAGDD++D DAAIY+S   DEDD +L
Sbjct  172  -----------------------ESGEVGGYELYMAGDDDEDDDAAIYRSD--DEDDSVL  206

Query  517  FSTAAGWNRLSIVLRDSGTLKFVKYVSAAANGDRWDITGEMGVDFG  562
             S    WN LS+VLRD G LKFVKYVS  A G RWDI+ E GV   
Sbjct  207  LSIPPSWNSLSLVLRDEGVLKFVKYVSRNAKGSRWDISCEWGVKSE  252


>CDD:433386 pfam13661, 2OG-FeII_Oxy_4, 2OG-Fe(II) oxygenase superfamily. 
 This family contains members of the 2-oxoglutarate (2OG) and 
Fe(II)-dependent oxygenase superfamily.
Length=98

 Score = 145 bits (367),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 51/119 (43%), Positives = 69/119 (58%), Gaps = 21/119 (18%)

Query  99   MAINIYNEGCHLLCHDDVIGSRRLSYILYLTDPDTPWQSEWGGALRLYPTTTKKDINGED  158
            M+ + Y +G  LLCHDDVI  RR+++ILYL +    W+ + GGAL LY T        + 
Sbjct  1    MSCSRYEKGDFLLCHDDVIEGRRIAFILYLVE---NWKPDDGGALDLYDT--------DG  49

Query  159  VLVPSPDFSLSIPPAFNQLSFFTVQPGESFHDVEEVYHPKEGEDKSAKRVRMAISGWFH  217
               P+ D + SI P +N+L FF V PG SFH V EV          A++ R++ISGWFH
Sbjct  50   HGQPA-DITKSIVPTWNKLVFFEVSPGHSFHQVAEVV---------AEKPRLSISGWFH  98


>CDD:463943 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. 
 This family contains members of the 2-oxoglutarate (2OG) and 
Fe(II)-dependent oxygenase superfamily.
Length=94

 Score = 83.6 bits (207),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 43/125 (34%), Gaps = 37/125 (30%)

Query  99   MAINIYNEGCHLLCHDDVI------GSRRLSYILYLTDPDTPWQSEWGGALRLYPTTTKK  152
            + +  Y +G     H D        G RRL+ +LYL D    W+ E GG L LY      
Sbjct  1    LQLARYGDGGFYKPHLDFFEGAEGGGQRRLTVVLYLND----WEEEEGGELVLYD-----  51

Query  153  DINGEDVLVPSPDFSLSIPPAFNQLSFFTVQPGESFHDVEEVYHPKEGEDKSAKRVRMAI  212
                        D    I P   +L  F      S H+V  V              R +I
Sbjct  52   -----------GDGVEDIKPKKGRLVLFPSSE-LSLHEVLPVT----------GGERWSI  89

Query  213  SGWFH  217
            +GWF 
Sbjct  90   TGWFR  94



Lambda      K        H        a         alpha
   0.313    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00018527

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402326 pfam10637, Ofd1_CTDD, Oxoglutarate and iron-dependent ...  333     3e-112
CDD:433386 pfam13661, 2OG-FeII_Oxy_4, 2OG-Fe(II) oxygenase superf...  145     3e-42 
CDD:463943 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superf...  83.6    4e-20 


>CDD:402326 pfam10637, Ofd1_CTDD, Oxoglutarate and iron-dependent oxygenase 
degradation C-term.  Ofd1 is a prolyl 4-hydroxylase-like 
2-oxoglutarate-Fe(II) dioxygenase that accelerates the degradation 
of Sre1N in the presence of oxygen. The domain is conserved 
from yeasts to humans. Yeast Sre1 is the orthologue of 
mammalian sterol regulatory element binding protein (SREBP), 
and it responds to changes in oxygen-dependent sterol synthesis 
as an indirect measure of oxygen availability. However, 
unlike the prolyl 4-hydroxylases that regulate mammalian 
hypoxia-inducible factor, Ofd1 uses multiple domains to regulate 
Sre1N degradation by oxygen; the Ofd1 N-terminal dioxygenase 
domain is required for oxygen sensing and this Ofd1 C-terminal 
domain accelerates Sre1N degradation in yeasts.
Length=255

 Score = 333 bits (855),  Expect = 3e-112, Method: Composition-based stats.
 Identities = 147/286 (51%), Positives = 177/286 (62%), Gaps = 44/286 (15%)

Query  286  DLNFLLQYIAPSYLTPDIAEEMSDTFSNESSLNLDRFLSDKFAARVRAYIEEQEKQ---E  342
            DL FL +YI P YLTP+  EE+ +TF  ESSL L+ FL+++FA  +R Y+E Q+ +   E
Sbjct  2    DLEFLSKYINPEYLTPETVEELQETFEEESSLELEDFLNEEFADLLREYLESQDSELEKE  61

Query  343  LPKSSDEIQAKTEWTVARPPHKQRYLFQQHGTATSDQK-----TPIQELLNDLFPSLAFR  397
            LP+SS EI+A   W VA PPHKQRYL+     A   Q      +P++ELL  LF S AFR
Sbjct  62   LPQSSKEIEA--PWKVAGPPHKQRYLYLDGEEARDLQNEKDIESPLKELL-QLFKSKAFR  118

Query  398  KWLALITGAEHITSYDLLARRFRRGQDYTLASGYDGEE-PRLEFTLGLTPTPGWEKETDE  456
            KWLAL+TG   +TS  +LARRFR GQDYTLA+  DGEE PRLE TL LTPT GW      
Sbjct  119  KWLALLTGL-VLTSEQILARRFRPGQDYTLATDTDGEELPRLEVTLCLTPTKGW------  171

Query  457  DEEMEDEDGEAQEKFKKKETASADEPAVGGYEIYMAGDDEDDGDAAIYKSAAADEDDGIL  516
                                   +   VGGYE+YMAGDD++D DAAIY+S   DEDD +L
Sbjct  172  -----------------------ESGEVGGYELYMAGDDDEDDDAAIYRSD--DEDDSVL  206

Query  517  FSTAAGWNRLSIVLRDSGTLKFVKYVSAAANGDRWDITGEMGVDFG  562
             S    WN LS+VLRD G LKFVKYVS  A G RWDI+ E GV   
Sbjct  207  LSIPPSWNSLSLVLRDEGVLKFVKYVSRNAKGSRWDISCEWGVKSE  252


>CDD:433386 pfam13661, 2OG-FeII_Oxy_4, 2OG-Fe(II) oxygenase superfamily. 
 This family contains members of the 2-oxoglutarate (2OG) and 
Fe(II)-dependent oxygenase superfamily.
Length=98

 Score = 145 bits (367),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 51/119 (43%), Positives = 69/119 (58%), Gaps = 21/119 (18%)

Query  99   MAINIYNEGCHLLCHDDVIGSRRLSYILYLTDPDTPWQSEWGGALRLYPTTTKKDINGED  158
            M+ + Y +G  LLCHDDVI  RR+++ILYL +    W+ + GGAL LY T        + 
Sbjct  1    MSCSRYEKGDFLLCHDDVIEGRRIAFILYLVE---NWKPDDGGALDLYDT--------DG  49

Query  159  VLVPSPDFSLSIPPAFNQLSFFTVQPGESFHDVEEVYHPKEGEDKSAKRVRMAISGWFH  217
               P+ D + SI P +N+L FF V PG SFH V EV          A++ R++ISGWFH
Sbjct  50   HGQPA-DITKSIVPTWNKLVFFEVSPGHSFHQVAEVV---------AEKPRLSISGWFH  98


>CDD:463943 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. 
 This family contains members of the 2-oxoglutarate (2OG) and 
Fe(II)-dependent oxygenase superfamily.
Length=94

 Score = 83.6 bits (207),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 43/125 (34%), Gaps = 37/125 (30%)

Query  99   MAINIYNEGCHLLCHDDVI------GSRRLSYILYLTDPDTPWQSEWGGALRLYPTTTKK  152
            + +  Y +G     H D        G RRL+ +LYL D    W+ E GG L LY      
Sbjct  1    LQLARYGDGGFYKPHLDFFEGAEGGGQRRLTVVLYLND----WEEEEGGELVLYD-----  51

Query  153  DINGEDVLVPSPDFSLSIPPAFNQLSFFTVQPGESFHDVEEVYHPKEGEDKSAKRVRMAI  212
                        D    I P   +L  F      S H+V  V              R +I
Sbjct  52   -----------GDGVEDIKPKKGRLVLFPSSE-LSLHEVLPVT----------GGERWSI  89

Query  213  SGWFH  217
            +GWF 
Sbjct  90   TGWFR  94



Lambda      K        H        a         alpha
   0.313    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00018528

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402326 pfam10637, Ofd1_CTDD, Oxoglutarate and iron-dependent ...  333     3e-112
CDD:433386 pfam13661, 2OG-FeII_Oxy_4, 2OG-Fe(II) oxygenase superf...  145     3e-42 
CDD:463943 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superf...  83.6    4e-20 


>CDD:402326 pfam10637, Ofd1_CTDD, Oxoglutarate and iron-dependent oxygenase 
degradation C-term.  Ofd1 is a prolyl 4-hydroxylase-like 
2-oxoglutarate-Fe(II) dioxygenase that accelerates the degradation 
of Sre1N in the presence of oxygen. The domain is conserved 
from yeasts to humans. Yeast Sre1 is the orthologue of 
mammalian sterol regulatory element binding protein (SREBP), 
and it responds to changes in oxygen-dependent sterol synthesis 
as an indirect measure of oxygen availability. However, 
unlike the prolyl 4-hydroxylases that regulate mammalian 
hypoxia-inducible factor, Ofd1 uses multiple domains to regulate 
Sre1N degradation by oxygen; the Ofd1 N-terminal dioxygenase 
domain is required for oxygen sensing and this Ofd1 C-terminal 
domain accelerates Sre1N degradation in yeasts.
Length=255

 Score = 333 bits (855),  Expect = 3e-112, Method: Composition-based stats.
 Identities = 147/286 (51%), Positives = 177/286 (62%), Gaps = 44/286 (15%)

Query  286  DLNFLLQYIAPSYLTPDIAEEMSDTFSNESSLNLDRFLSDKFAARVRAYIEEQEKQ---E  342
            DL FL +YI P YLTP+  EE+ +TF  ESSL L+ FL+++FA  +R Y+E Q+ +   E
Sbjct  2    DLEFLSKYINPEYLTPETVEELQETFEEESSLELEDFLNEEFADLLREYLESQDSELEKE  61

Query  343  LPKSSDEIQAKTEWTVARPPHKQRYLFQQHGTATSDQK-----TPIQELLNDLFPSLAFR  397
            LP+SS EI+A   W VA PPHKQRYL+     A   Q      +P++ELL  LF S AFR
Sbjct  62   LPQSSKEIEA--PWKVAGPPHKQRYLYLDGEEARDLQNEKDIESPLKELL-QLFKSKAFR  118

Query  398  KWLALITGAEHITSYDLLARRFRRGQDYTLASGYDGEE-PRLEFTLGLTPTPGWEKETDE  456
            KWLAL+TG   +TS  +LARRFR GQDYTLA+  DGEE PRLE TL LTPT GW      
Sbjct  119  KWLALLTGL-VLTSEQILARRFRPGQDYTLATDTDGEELPRLEVTLCLTPTKGW------  171

Query  457  DEEMEDEDGEAQEKFKKKETASADEPAVGGYEIYMAGDDEDDGDAAIYKSAAADEDDGIL  516
                                   +   VGGYE+YMAGDD++D DAAIY+S   DEDD +L
Sbjct  172  -----------------------ESGEVGGYELYMAGDDDEDDDAAIYRSD--DEDDSVL  206

Query  517  FSTAAGWNRLSIVLRDSGTLKFVKYVSAAANGDRWDITGEMGVDFG  562
             S    WN LS+VLRD G LKFVKYVS  A G RWDI+ E GV   
Sbjct  207  LSIPPSWNSLSLVLRDEGVLKFVKYVSRNAKGSRWDISCEWGVKSE  252


>CDD:433386 pfam13661, 2OG-FeII_Oxy_4, 2OG-Fe(II) oxygenase superfamily. 
 This family contains members of the 2-oxoglutarate (2OG) and 
Fe(II)-dependent oxygenase superfamily.
Length=98

 Score = 145 bits (367),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 51/119 (43%), Positives = 69/119 (58%), Gaps = 21/119 (18%)

Query  99   MAINIYNEGCHLLCHDDVIGSRRLSYILYLTDPDTPWQSEWGGALRLYPTTTKKDINGED  158
            M+ + Y +G  LLCHDDVI  RR+++ILYL +    W+ + GGAL LY T        + 
Sbjct  1    MSCSRYEKGDFLLCHDDVIEGRRIAFILYLVE---NWKPDDGGALDLYDT--------DG  49

Query  159  VLVPSPDFSLSIPPAFNQLSFFTVQPGESFHDVEEVYHPKEGEDKSAKRVRMAISGWFH  217
               P+ D + SI P +N+L FF V PG SFH V EV          A++ R++ISGWFH
Sbjct  50   HGQPA-DITKSIVPTWNKLVFFEVSPGHSFHQVAEVV---------AEKPRLSISGWFH  98


>CDD:463943 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. 
 This family contains members of the 2-oxoglutarate (2OG) and 
Fe(II)-dependent oxygenase superfamily.
Length=94

 Score = 83.6 bits (207),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 43/125 (34%), Gaps = 37/125 (30%)

Query  99   MAINIYNEGCHLLCHDDVI------GSRRLSYILYLTDPDTPWQSEWGGALRLYPTTTKK  152
            + +  Y +G     H D        G RRL+ +LYL D    W+ E GG L LY      
Sbjct  1    LQLARYGDGGFYKPHLDFFEGAEGGGQRRLTVVLYLND----WEEEEGGELVLYD-----  51

Query  153  DINGEDVLVPSPDFSLSIPPAFNQLSFFTVQPGESFHDVEEVYHPKEGEDKSAKRVRMAI  212
                        D    I P   +L  F      S H+V  V              R +I
Sbjct  52   -----------GDGVEDIKPKKGRLVLFPSSE-LSLHEVLPVT----------GGERWSI  89

Query  213  SGWFH  217
            +GWF 
Sbjct  90   TGWFR  94



Lambda      K        H        a         alpha
   0.313    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00012892

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402326 pfam10637, Ofd1_CTDD, Oxoglutarate and iron-dependent ...  333     3e-112
CDD:433386 pfam13661, 2OG-FeII_Oxy_4, 2OG-Fe(II) oxygenase superf...  145     3e-42 
CDD:463943 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superf...  83.6    4e-20 


>CDD:402326 pfam10637, Ofd1_CTDD, Oxoglutarate and iron-dependent oxygenase 
degradation C-term.  Ofd1 is a prolyl 4-hydroxylase-like 
2-oxoglutarate-Fe(II) dioxygenase that accelerates the degradation 
of Sre1N in the presence of oxygen. The domain is conserved 
from yeasts to humans. Yeast Sre1 is the orthologue of 
mammalian sterol regulatory element binding protein (SREBP), 
and it responds to changes in oxygen-dependent sterol synthesis 
as an indirect measure of oxygen availability. However, 
unlike the prolyl 4-hydroxylases that regulate mammalian 
hypoxia-inducible factor, Ofd1 uses multiple domains to regulate 
Sre1N degradation by oxygen; the Ofd1 N-terminal dioxygenase 
domain is required for oxygen sensing and this Ofd1 C-terminal 
domain accelerates Sre1N degradation in yeasts.
Length=255

 Score = 333 bits (855),  Expect = 3e-112, Method: Composition-based stats.
 Identities = 147/286 (51%), Positives = 177/286 (62%), Gaps = 44/286 (15%)

Query  286  DLNFLLQYIAPSYLTPDIAEEMSDTFSNESSLNLDRFLSDKFAARVRAYIEEQEKQ---E  342
            DL FL +YI P YLTP+  EE+ +TF  ESSL L+ FL+++FA  +R Y+E Q+ +   E
Sbjct  2    DLEFLSKYINPEYLTPETVEELQETFEEESSLELEDFLNEEFADLLREYLESQDSELEKE  61

Query  343  LPKSSDEIQAKTEWTVARPPHKQRYLFQQHGTATSDQK-----TPIQELLNDLFPSLAFR  397
            LP+SS EI+A   W VA PPHKQRYL+     A   Q      +P++ELL  LF S AFR
Sbjct  62   LPQSSKEIEA--PWKVAGPPHKQRYLYLDGEEARDLQNEKDIESPLKELL-QLFKSKAFR  118

Query  398  KWLALITGAEHITSYDLLARRFRRGQDYTLASGYDGEE-PRLEFTLGLTPTPGWEKETDE  456
            KWLAL+TG   +TS  +LARRFR GQDYTLA+  DGEE PRLE TL LTPT GW      
Sbjct  119  KWLALLTGL-VLTSEQILARRFRPGQDYTLATDTDGEELPRLEVTLCLTPTKGW------  171

Query  457  DEEMEDEDGEAQEKFKKKETASADEPAVGGYEIYMAGDDEDDGDAAIYKSAAADEDDGIL  516
                                   +   VGGYE+YMAGDD++D DAAIY+S   DEDD +L
Sbjct  172  -----------------------ESGEVGGYELYMAGDDDEDDDAAIYRSD--DEDDSVL  206

Query  517  FSTAAGWNRLSIVLRDSGTLKFVKYVSAAANGDRWDITGEMGVDFG  562
             S    WN LS+VLRD G LKFVKYVS  A G RWDI+ E GV   
Sbjct  207  LSIPPSWNSLSLVLRDEGVLKFVKYVSRNAKGSRWDISCEWGVKSE  252


>CDD:433386 pfam13661, 2OG-FeII_Oxy_4, 2OG-Fe(II) oxygenase superfamily. 
 This family contains members of the 2-oxoglutarate (2OG) and 
Fe(II)-dependent oxygenase superfamily.
Length=98

 Score = 145 bits (367),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 51/119 (43%), Positives = 69/119 (58%), Gaps = 21/119 (18%)

Query  99   MAINIYNEGCHLLCHDDVIGSRRLSYILYLTDPDTPWQSEWGGALRLYPTTTKKDINGED  158
            M+ + Y +G  LLCHDDVI  RR+++ILYL +    W+ + GGAL LY T        + 
Sbjct  1    MSCSRYEKGDFLLCHDDVIEGRRIAFILYLVE---NWKPDDGGALDLYDT--------DG  49

Query  159  VLVPSPDFSLSIPPAFNQLSFFTVQPGESFHDVEEVYHPKEGEDKSAKRVRMAISGWFH  217
               P+ D + SI P +N+L FF V PG SFH V EV          A++ R++ISGWFH
Sbjct  50   HGQPA-DITKSIVPTWNKLVFFEVSPGHSFHQVAEVV---------AEKPRLSISGWFH  98


>CDD:463943 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. 
 This family contains members of the 2-oxoglutarate (2OG) and 
Fe(II)-dependent oxygenase superfamily.
Length=94

 Score = 83.6 bits (207),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 43/125 (34%), Gaps = 37/125 (30%)

Query  99   MAINIYNEGCHLLCHDDVI------GSRRLSYILYLTDPDTPWQSEWGGALRLYPTTTKK  152
            + +  Y +G     H D        G RRL+ +LYL D    W+ E GG L LY      
Sbjct  1    LQLARYGDGGFYKPHLDFFEGAEGGGQRRLTVVLYLND----WEEEEGGELVLYD-----  51

Query  153  DINGEDVLVPSPDFSLSIPPAFNQLSFFTVQPGESFHDVEEVYHPKEGEDKSAKRVRMAI  212
                        D    I P   +L  F      S H+V  V              R +I
Sbjct  52   -----------GDGVEDIKPKKGRLVLFPSSE-LSLHEVLPVT----------GGERWSI  89

Query  213  SGWFH  217
            +GWF 
Sbjct  90   TGWFR  94



Lambda      K        H        a         alpha
   0.313    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00012893

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  82.6    1e-19


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 82.6 bits (204),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 36/121 (30%), Positives = 57/121 (47%), Gaps = 1/121 (1%)

Query  34   TILLLHGFPSSCYDWRHQIHHFINLGYGVLAPDLLGYGGTSKPTAVEEYKLKSMAREIIE  93
             +LLLHG P S   WR         G+ V+A DL G+G +S+P A ++Y+   +A ++  
Sbjct  2    PVLLLHGLPGSSDLWRKLAPALARDGFRVIALDLRGFGKSSRPKAQDDYRTDDLAEDLEY  61

Query  94   LLEHEGLRQIHAVAHDTGCNLLSRLADYYPDRLLSCTFIAVPYSKPGEHFDLDMVNRFTK  153
            +LE  GL +++ V H  G  +    A  YPDR+ +   +      P E  + D       
Sbjct  62   ILEALGLEKVNLVGHSMGGLIALAYAAKYPDRVKALVLLG-ALDPPHELDEADRFILALF  120

Query  154  Q  154
             
Sbjct  121  P  121



Lambda      K        H        a         alpha
   0.321    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00012894

Length=186
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  83.7    2e-20


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 83.7 bits (207),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 36/121 (30%), Positives = 57/121 (47%), Gaps = 1/121 (1%)

Query  34   TILLLHGFPSSCYDWRHQIHHFINLGYGVLAPDLLGYGGTSKPTAVEEYKLKSMAREIIE  93
             +LLLHG P S   WR         G+ V+A DL G+G +S+P A ++Y+   +A ++  
Sbjct  2    PVLLLHGLPGSSDLWRKLAPALARDGFRVIALDLRGFGKSSRPKAQDDYRTDDLAEDLEY  61

Query  94   LLEHEGLRQIHAVAHDTGCNLLSRLADYYPDRLLSCTFIAVPYSKPGEHFDLDMVNRFTK  153
            +LE  GL +++ V H  G  +    A  YPDR+ +   +      P E  + D       
Sbjct  62   ILEALGLEKVNLVGHSMGGLIALAYAAKYPDRVKALVLLG-ALDPPHELDEADRFILALF  120

Query  154  Q  154
             
Sbjct  121  P  121



Lambda      K        H        a         alpha
   0.323    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00012895

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00012896

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00012897

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461382 pfam04658, TAFII55_N, TAFII55 protein conserved region...  239     4e-78


>CDD:461382 pfam04658, TAFII55_N, TAFII55 protein conserved region.  The 
general transcription factor, TFIID, consists of the TATA-binding 
protein (TBP) associated with a series of TBP-associated 
factors (TAFs) that together participate in the assembly 
of the transcription preinitiation complex. TAFII55 binds to 
TAFII250 and inhibits it acetyltransferase activity. The exact 
role of TAFII55 is currently unknown. The conserved region 
is situated towards the N-terminus of the protein.
Length=160

 Score = 239 bits (612),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 87/162 (54%), Positives = 109/162 (67%), Gaps = 5/162 (3%)

Query  133  IEEQFILRMLPGEDCEYLRQTINERRFDRSEFSFKPLTREGRRAVLRIRDKQYAAALVDL  192
            IEEQFILR+ P ED +YLR+ I        + S K   ++GRRAV+RI  + YAA LVDL
Sbjct  1    IEEQFILRLPPDEDADYLRKAIESGDIK-DDLSIK-FLKDGRRAVVRIGGQLYAAKLVDL  58

Query  193  PCIIEGMKSWDRRGWYKSADICQMLLVLGPVSSDAEALNYPLPSDVEILDE---KTLQYP  249
            P IIE MK+ D++ +YK+ADICQMLLVLGP+ ++ EA   PLP +     E   K  QYP
Sbjct  59   PTIIESMKTIDKKNFYKTADICQMLLVLGPIKNEEEAKTEPLPEEPPPKKEVKDKKYQYP  118

Query  250  HGLTPPLRYVRKRRFRERLSTRTIEQVEKAVEDLIAQDEAAI  291
            HGLTPPL+ VRKRRFR+RL  + IE VEK V+ L+  D  A 
Sbjct  119  HGLTPPLKNVRKRRFRKRLKKKEIEAVEKEVKRLLRADAEAE  160



Lambda      K        H        a         alpha
   0.309    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00012898

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461382 pfam04658, TAFII55_N, TAFII55 protein conserved region...  239     4e-78


>CDD:461382 pfam04658, TAFII55_N, TAFII55 protein conserved region.  The 
general transcription factor, TFIID, consists of the TATA-binding 
protein (TBP) associated with a series of TBP-associated 
factors (TAFs) that together participate in the assembly 
of the transcription preinitiation complex. TAFII55 binds to 
TAFII250 and inhibits it acetyltransferase activity. The exact 
role of TAFII55 is currently unknown. The conserved region 
is situated towards the N-terminus of the protein.
Length=160

 Score = 239 bits (612),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 87/162 (54%), Positives = 109/162 (67%), Gaps = 5/162 (3%)

Query  133  IEEQFILRMLPGEDCEYLRQTINERRFDRSEFSFKPLTREGRRAVLRIRDKQYAAALVDL  192
            IEEQFILR+ P ED +YLR+ I        + S K   ++GRRAV+RI  + YAA LVDL
Sbjct  1    IEEQFILRLPPDEDADYLRKAIESGDIK-DDLSIK-FLKDGRRAVVRIGGQLYAAKLVDL  58

Query  193  PCIIEGMKSWDRRGWYKSADICQMLLVLGPVSSDAEALNYPLPSDVEILDE---KTLQYP  249
            P IIE MK+ D++ +YK+ADICQMLLVLGP+ ++ EA   PLP +     E   K  QYP
Sbjct  59   PTIIESMKTIDKKNFYKTADICQMLLVLGPIKNEEEAKTEPLPEEPPPKKEVKDKKYQYP  118

Query  250  HGLTPPLRYVRKRRFRERLSTRTIEQVEKAVEDLIAQDEAAI  291
            HGLTPPL+ VRKRRFR+RL  + IE VEK V+ L+  D  A 
Sbjct  119  HGLTPPLKNVRKRRFRKRLKKKEIEAVEKEVKRLLRADAEAE  160



Lambda      K        H        a         alpha
   0.309    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00018529

Length=441


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00012899

Length=509


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 632879588


Query= TCONS_00012900

Length=509


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 632879588


Query= TCONS_00012901

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  65.7    1e-12


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 65.7 bits (161),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query  1    MWSFGAVLFHILSGTPPYTGRGDDRGSQMLRNIMTTEPDYDVLRREGVSEAGVDFVRRLL  60
            +WS G +L+ +L+G PP+   G +        I   +P         +SE   D +++LL
Sbjct  143  VWSLGCILYELLTGKPPF--PGINGNEIYELIID--QPYAFPELPSNLSEEAKDLLKKLL  198

Query  61   NRDPHSRPKESECFQHPWI  79
             +DP  R   ++  QHPW 
Sbjct  199  KKDPSKRLTATQALQHPWF  217



Lambda      K        H        a         alpha
   0.314    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 736753004


Query= TCONS_00018530

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  65.7    1e-12


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 65.7 bits (161),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query  1    MWSFGAVLFHILSGTPPYTGRGDDRGSQMLRNIMTTEPDYDVLRREGVSEAGVDFVRRLL  60
            +WS G +L+ +L+G PP+   G +        I   +P         +SE   D +++LL
Sbjct  143  VWSLGCILYELLTGKPPF--PGINGNEIYELIID--QPYAFPELPSNLSEEAKDLLKKLL  198

Query  61   NRDPHSRPKESECFQHPWI  79
             +DP  R   ++  QHPW 
Sbjct  199  KKDPSKRLTATQALQHPWF  217



Lambda      K        H        a         alpha
   0.314    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 736753004


Query= TCONS_00012902

Length=750


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 954579712


Query= TCONS_00018532

Length=750


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 954579712


Query= TCONS_00018531

Length=750


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 954579712


Query= TCONS_00018533

Length=750


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 954579712


Query= TCONS_00012903

Length=750


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 954579712


Query= TCONS_00018534

Length=750


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 954579712


Query= TCONS_00012904

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426128 pfam01212, Beta_elim_lyase, Beta-eliminating lyase         274     1e-92


>CDD:426128 pfam01212, Beta_elim_lyase, Beta-eliminating lyase.  
Length=288

 Score = 274 bits (702),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 105/243 (43%), Positives = 142/243 (58%), Gaps = 4/243 (2%)

Query  42   DTMTKPTPSMLEAICQTTLLDDVFEEDPVTNDLQAYVAERTGHQSALLVMSGTMGNQVAI  101
            DT+T PTP+M EA+    + D+V+  DP  N L+  VAE  G ++AL V SGT  NQ+A+
Sbjct  5    DTVTGPTPAMREAMAAAMVGDEVYGGDPTVNRLEDRVAELFGKEAALFVPSGTAANQLAL  64

Query  102  RTHLVQPPYSVLCDHRSHIVRYEAGGVSSLTGAMVQPIVPSNGIHLTLEDIQKHAVLDED  161
              H  Q    V+C   +HI   E GG + L G   +P+      ++ LED++        
Sbjct  65   MAHC-QRGDEVICGEPAHIHFDETGGHAELGGVQPRPLDGDEAGNMDLEDLEAAIREVGA  123

Query  162  VHYCPTKLISLENTLD---GMVMPLAEARRITEWAHQNGVKVHLDGARLWEAVVSGAGSL  218
              + PT LISLENT +   G V+ L   R I   A ++G+ VHLDGAR   A V+    +
Sbjct  124  DIFPPTGLISLENTHNSAGGQVVSLENLREIAALAREHGIPVHLDGARFANAAVALGVIV  183

Query  219  PEYAGLFDSVSLCFSKGLGAPIGSIIVGSTEFIKKARWFRKSIGGGVRQAGVIAAAARVA  278
             E     DSV++C SKGLGAP+GS++ GS +FI KA   RK +GGG+RQAGV+AAA   A
Sbjct  184  KEITSYADSVTMCLSKGLGAPVGSVLAGSDDFIAKAIRQRKYLGGGLRQAGVLAAAGLRA  243

Query  279  LEE  281
            LEE
Sbjct  244  LEE  246



Lambda      K        H        a         alpha
   0.318    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00012905

Length=750


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 954579712


Query= TCONS_00012906

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        84.6    3e-21


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 84.6 bits (210),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query  120  PPALESFVSGAVAGGLATASTYPLDLLRTRFAAQGT--ERIYTSLLASVRDIARSEGPAG  177
               L S ++G +AG +A   TYPLD+++TR   QG   +     +L   + I + EG  G
Sbjct  3    LSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRG  62

Query  178  FFRGCSAAVGQIVPYMGLFFATYESLRPVLSG  209
             ++G    + ++ P   ++F TYE+L+ +L  
Sbjct  63   LYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 83.5 bits (207),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 34/90 (38%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query  18   VLSGGIAGLVSRFCVAPLDVVKIRLQLQIHSLSDPASHHDVVGPIYKGTLSTMRTIIKQE  77
            +L+GGIAG ++     PLDVVK RLQ+Q  S               +G L   + I K+E
Sbjct  9    LLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSK----------GRGILDCFKKIYKEE  58

Query  78   GITGLWKGNIPAELMYVCYGALQFTAYRTT  107
            GI GL+KG +P  L      A+ F  Y T 
Sbjct  59   GIRGLYKGLLPNLLRVAPAAAIYFGTYETL  88


 Score = 81.5 bits (202),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 7/94 (7%)

Query  219  DAAAGVIASVLAKSGVFPLDLVRKRLQVQGPTRTLYVHRNIPEYRGVFSTIAMIVRTQGV  278
               AG IA  +A +  +PLD+V+ RLQVQG +          + RG+      I + +G+
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGK-------SKGRGILDCFKKIYKEEGI  60

Query  279  RGLYRGLTVSLIKAAPASAITMWTYERSLKLLRD  312
            RGLY+GL  +L++ APA+AI   TYE   +LL  
Sbjct  61   RGLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94



Lambda      K        H        a         alpha
   0.323    0.138    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00012909

Length=750


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 954579712


Query= TCONS_00018535

Length=489


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0809    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00012907

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, ...  151     5e-43


>CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
 This family consists of taurine catabolism dioxygenases 
of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent 
taurine dioxygenase. This enzyme catalyzes 
the oxygenolytic release of sulfite from taurine. TfdA 
from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate 
dioxygenase. TfdA from Alcaligenes eutrophus 
JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also 
included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.
Length=264

 Score = 151 bits (383),  Expect = 5e-43, Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 115/261 (44%), Gaps = 27/261 (10%)

Query  191  WVSYEDYMNNETAFIKSMR-HLALMGIIFVKNIPDSREMVEKIATKMGPL-------RNT  242
             V   D +  +    + +R  LA  G++  +  P S E +   A + GPL       RN 
Sbjct  13   IVDLPDPLALDDELREELRELLAEHGVLLFRGQPLSPEQLLAFARRFGPLYGTPGGGRND  72

Query  243  FYGPTWDVRSVPKAPNVA-YTNVFLGFHMDLMYMNEPPGFQLLHCLENSCEGGESLFVDG  301
             Y    DV SV    + A      L +H DL Y+ +PPG QLLHCLE + EGGE+LF DG
Sbjct  73   GYPEVLDVSSVYPDADPANTAYTGLPWHTDLSYLEDPPGIQLLHCLEAAPEGGETLFADG  132

Query  302  FRVAELIRWKYPEQFEDLTKLRLNYEYNHKEHIYNN---------SWPVVETEDGDPKKR  352
                  +  + PE FE LT +   + Y  + +  N            PVV T      ++
Sbjct  133  RAAYNALPEELPELFEGLTAVHSYFRYRGEAYPANRPADDKHPPTGHPVVRTHP-VTGRK  191

Query  353  ILHVNYSPPFQAPLLSDDNHQMPWIEYSRALRAFAREIERPYNVFQLKLNPGECVIFENR  412
             L+VN  PPF   ++          E   AL A       P   ++ K  PG+ VI++NR
Sbjct  192  ALYVN--PPFATRIVGLGT-----PESDEALDALFALATDPEFTYRFKWQPGDLVIWDNR  244

Query  413  RILHARNQFNTEQGKRWLAGT  433
            R+LH R  F+  +  R L   
Sbjct  245  RVLHGRTAFDPGER-RHLLRA  264



Lambda      K        H        a         alpha
   0.320    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593513872


Query= TCONS_00012908

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425695 pfam00462, Glutaredoxin, Glutaredoxin                      81.8    7e-21
CDD:395038 pfam00085, Thioredoxin, Thioredoxin. Thioredoxins are ...  62.2    5e-13


>CDD:425695 pfam00462, Glutaredoxin, Glutaredoxin.  
Length=60

 Score = 81.8 bits (203),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 20/65 (31%), Positives = 38/65 (58%), Gaps = 5/65 (8%)

Query  178  VMLFMKGTPSAPQCGFSRQLVAILREKSVKYGFFNILADEDVRQGLKEFADWPTFPQLWV  237
            V+L+ K     P C F ++   +L+   V +   ++  D ++R+ LKE + WPT PQ+++
Sbjct  1    VVLYTK-----PTCPFCKRAKRLLKSLGVDFEEIDVDEDPEIREELKELSGWPTVPQVFI  55

Query  238  EGELV  242
            +GE +
Sbjct  56   DGEHI  60


>CDD:395038 pfam00085, Thioredoxin, Thioredoxin.  Thioredoxins are small 
enzymes that participate in redox reactions, via the reversible 
oxidation of an active centre disulfide bond. Some members 
with only the active site are not separated from the noise.
Length=103

 Score = 62.2 bits (152),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 24/94 (26%), Positives = 45/94 (48%), Gaps = 6/94 (6%)

Query  6   EITSDADFSAHTSSLPPSTLLVLYFHAPWAAPCAQMRAVLSALASQHPVTTPPTISFVSV  65
            + +DA+F         S  +++ F+APW  PC  +      LA ++       + F  V
Sbjct  3   VVLTDANFDEVVQK--SSKPVLVDFYAPWCGPCKMLAPEYEELAQEYKGN----VVFAKV  56

Query  66  NAEELPDISEEYNVTAVPYVVLIRNGQILESISG  99
           + +E PD++ +Y V   P ++  +NGQ ++   G
Sbjct  57  DVDENPDLASKYGVRGYPTLIFFKNGQPVDDYVG  90



Lambda      K        H        a         alpha
   0.316    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00018536

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        84.6    3e-21


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 84.6 bits (210),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query  120  PPALESFVSGAVAGGLATASTYPLDLLRTRFAAQGT--ERIYTSLLASVRDIARSEGPAG  177
               L S ++G +AG +A   TYPLD+++TR   QG   +     +L   + I + EG  G
Sbjct  3    LSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRG  62

Query  178  FFRGCSAAVGQIVPYMGLFFATYESLRPVLSG  209
             ++G    + ++ P   ++F TYE+L+ +L  
Sbjct  63   LYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 83.5 bits (207),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 34/90 (38%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query  18   VLSGGIAGLVSRFCVAPLDVVKIRLQLQIHSLSDPASHHDVVGPIYKGTLSTMRTIIKQE  77
            +L+GGIAG ++     PLDVVK RLQ+Q  S               +G L   + I K+E
Sbjct  9    LLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSK----------GRGILDCFKKIYKEE  58

Query  78   GITGLWKGNIPAELMYVCYGALQFTAYRTT  107
            GI GL+KG +P  L      A+ F  Y T 
Sbjct  59   GIRGLYKGLLPNLLRVAPAAAIYFGTYETL  88


 Score = 81.5 bits (202),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 7/94 (7%)

Query  219  DAAAGVIASVLAKSGVFPLDLVRKRLQVQGPTRTLYVHRNIPEYRGVFSTIAMIVRTQGV  278
               AG IA  +A +  +PLD+V+ RLQVQG +          + RG+      I + +G+
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGK-------SKGRGILDCFKKIYKEEGI  60

Query  279  RGLYRGLTVSLIKAAPASAITMWTYERSLKLLRD  312
            RGLY+GL  +L++ APA+AI   TYE   +LL  
Sbjct  61   RGLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94



Lambda      K        H        a         alpha
   0.323    0.138    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00012910

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        85.8    2e-21


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 85.8 bits (213),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query  144  PPALESFVSGAVAGGLATASTYPLDLLRTRFAAQGT--ERIYTSLLASVRDIARSEGPAG  201
               L S ++G +AG +A   TYPLD+++TR   QG   +     +L   + I + EG  G
Sbjct  3    LSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRG  62

Query  202  FFRGCSAAVGQIVPYMGLFFATYESLRPVLSG  233
             ++G    + ++ P   ++F TYE+L+ +L  
Sbjct  63   LYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 84.6 bits (210),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 34/90 (38%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query  42   VLSGGIAGLVSRFCVAPLDVVKIRLQLQIHSLSDPASHHDVVGPIYKGTLSTMRTIIKQE  101
            +L+GGIAG ++     PLDVVK RLQ+Q  S               +G L   + I K+E
Sbjct  9    LLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSK----------GRGILDCFKKIYKEE  58

Query  102  GITGLWKGNIPAELMYVCYGALQFTAYRTT  131
            GI GL+KG +P  L      A+ F  Y T 
Sbjct  59   GIRGLYKGLLPNLLRVAPAAAIYFGTYETL  88


 Score = 82.7 bits (205),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 7/94 (7%)

Query  243  DAAAGVIASVLAKSGVFPLDLVRKRLQVQGPTRTLYVHRNIPEYRGVFSTIAMIVRTQGV  302
               AG IA  +A +  +PLD+V+ RLQVQG +          + RG+      I + +G+
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGK-------SKGRGILDCFKKIYKEEGI  60

Query  303  RGLYRGLTVSLIKAAPASAITMWTYERSLKLLRD  336
            RGLY+GL  +L++ APA+AI   TYE   +LL  
Sbjct  61   RGLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94



Lambda      K        H        a         alpha
   0.322    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00018538

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        85.8    2e-21


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 85.8 bits (213),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query  144  PPALESFVSGAVAGGLATASTYPLDLLRTRFAAQGT--ERIYTSLLASVRDIARSEGPAG  201
               L S ++G +AG +A   TYPLD+++TR   QG   +     +L   + I + EG  G
Sbjct  3    LSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRG  62

Query  202  FFRGCSAAVGQIVPYMGLFFATYESLRPVLSG  233
             ++G    + ++ P   ++F TYE+L+ +L  
Sbjct  63   LYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 84.6 bits (210),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 34/90 (38%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query  42   VLSGGIAGLVSRFCVAPLDVVKIRLQLQIHSLSDPASHHDVVGPIYKGTLSTMRTIIKQE  101
            +L+GGIAG ++     PLDVVK RLQ+Q  S               +G L   + I K+E
Sbjct  9    LLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSK----------GRGILDCFKKIYKEE  58

Query  102  GITGLWKGNIPAELMYVCYGALQFTAYRTT  131
            GI GL+KG +P  L      A+ F  Y T 
Sbjct  59   GIRGLYKGLLPNLLRVAPAAAIYFGTYETL  88


 Score = 82.7 bits (205),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 7/94 (7%)

Query  243  DAAAGVIASVLAKSGVFPLDLVRKRLQVQGPTRTLYVHRNIPEYRGVFSTIAMIVRTQGV  302
               AG IA  +A +  +PLD+V+ RLQVQG +          + RG+      I + +G+
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGK-------SKGRGILDCFKKIYKEEGI  60

Query  303  RGLYRGLTVSLIKAAPASAITMWTYERSLKLLRD  336
            RGLY+GL  +L++ APA+AI   TYE   +LL  
Sbjct  61   RGLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94



Lambda      K        H        a         alpha
   0.322    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00012911

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00012912

Length=949
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459999 pfam00924, MS_channel, Mechanosensitive ion channel. T...  92.3    1e-21


>CDD:459999 pfam00924, MS_channel, Mechanosensitive ion channel.  Two members 
of this protein family of M. jannaschii have been functionally 
characterized. Both proteins form mechanosensitive (MS) 
ion channels upon reconstitution into liposomes and functional 
examination by the patch-clamp technique. Therefore this 
family are likely to also be MS channel proteins.
Length=203

 Score = 92.3 bits (230),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 43/205 (21%), Positives = 84/205 (41%), Gaps = 12/205 (6%)

Query  500  NVLEFFVIVIALIVFLSLISTSAAGVLTSAGSSILALSWLFSATAQEFLQSVIFVFVKHP  559
             +L++ +IV+ +++ LS +  + + +L   G+  LAL +         +  +I +F K P
Sbjct  2    KILKYLIIVVGILIVLSYLGVNVSALLAGLGALGLALGFALQDLVSNLVSGIIILFEK-P  60

Query  560  FDVGDRVTIYGNAGDAGLGDDYFVKQISLLYTEFKKMQGHVVQAPNSYLNTLFILNQRRS  619
            F +GD + I    GD     +  V+ I L  T  +   G +V  PNS + T  I+N  RS
Sbjct  61   FKIGDWIEI----GDI----EGTVEDIGLRTTTIRTFDGRLVTIPNSSILTSNIINYSRS  112

Query  620  GALAEAVPIVIKYGTTLEQIDALRQRLLEFVRSEKREFQTNILTEMRQVTENFSVTLNVV  679
                  + I + Y +  ++++ + + L E         +      +     + S+   + 
Sbjct  113  PTRRVELSIGVAYSSDPDKLEKVIEILKEAAYEHPLVLKDPEPPVVFGEFGDSSLNFELR  172

Query  680  FFYKSNWQNE---GLRLQRRNKFIC  701
             + K+           L  R K   
Sbjct  173  VWVKTLPGEYFNVRSELNLRIKKAL  197



Lambda      K        H        a         alpha
   0.318    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1207742228


Query= TCONS_00012913

Length=949
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459999 pfam00924, MS_channel, Mechanosensitive ion channel. T...  92.3    1e-21


>CDD:459999 pfam00924, MS_channel, Mechanosensitive ion channel.  Two members 
of this protein family of M. jannaschii have been functionally 
characterized. Both proteins form mechanosensitive (MS) 
ion channels upon reconstitution into liposomes and functional 
examination by the patch-clamp technique. Therefore this 
family are likely to also be MS channel proteins.
Length=203

 Score = 92.3 bits (230),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 43/205 (21%), Positives = 84/205 (41%), Gaps = 12/205 (6%)

Query  500  NVLEFFVIVIALIVFLSLISTSAAGVLTSAGSSILALSWLFSATAQEFLQSVIFVFVKHP  559
             +L++ +IV+ +++ LS +  + + +L   G+  LAL +         +  +I +F K P
Sbjct  2    KILKYLIIVVGILIVLSYLGVNVSALLAGLGALGLALGFALQDLVSNLVSGIIILFEK-P  60

Query  560  FDVGDRVTIYGNAGDAGLGDDYFVKQISLLYTEFKKMQGHVVQAPNSYLNTLFILNQRRS  619
            F +GD + I    GD     +  V+ I L  T  +   G +V  PNS + T  I+N  RS
Sbjct  61   FKIGDWIEI----GDI----EGTVEDIGLRTTTIRTFDGRLVTIPNSSILTSNIINYSRS  112

Query  620  GALAEAVPIVIKYGTTLEQIDALRQRLLEFVRSEKREFQTNILTEMRQVTENFSVTLNVV  679
                  + I + Y +  ++++ + + L E         +      +     + S+   + 
Sbjct  113  PTRRVELSIGVAYSSDPDKLEKVIEILKEAAYEHPLVLKDPEPPVVFGEFGDSSLNFELR  172

Query  680  FFYKSNWQNE---GLRLQRRNKFIC  701
             + K+           L  R K   
Sbjct  173  VWVKTLPGEYFNVRSELNLRIKKAL  197



Lambda      K        H        a         alpha
   0.318    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1207742228


Query= TCONS_00012915

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00012914

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00012916

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00012917

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00012918

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00012919

Length=1218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459875 pfam00620, RhoGAP, RhoGAP domain. GTPase activator pro...  157     6e-45
CDD:395333 pfam00412, LIM, LIM domain. This family represents two...  65.8    5e-14


>CDD:459875 pfam00620, RhoGAP, RhoGAP domain.  GTPase activator proteins 
towards Rho/Rac/Cdc42-like small GTPases.
Length=148

 Score = 157 bits (399),  Expect = 6e-45, Method: Composition-based stats.
 Identities = 59/153 (39%), Positives = 87/153 (57%), Gaps = 6/153 (4%)

Query  887   PALVDDAVSAMRQMDMSVEGVFRKNGNIRRLKEISELID-NKYDQVDLTKETPVQIAALL  945
             P +V   V  + +  +  EG+FR +G+  R+KE+ E  D      +DL +E    +A+LL
Sbjct  1     PLIVRKCVEYLEKRGLDTEGIFRVSGSASRIKELREAFDRGPDVDLDLEEEDVHVVASLL  60

Query  946   KKFLREMPDPLLTFKLHNLFVISQKIPDPEKQKRLLHLTCCLLPKAHRDTMEVLFAFLNW  1005
             K FLRE+P+PLLTF+L+  F+ + K+PD E++   L      LP A+RDT+  L A LN 
Sbjct  61    KLFLRELPEPLLTFELYEEFIEAAKLPDEEERLEALRELLRKLPPANRDTLRYLLAHLNR  120

Query  1006  TSSFSHVDEDTGSKMDIHNLATVITPNILYPNT  1038
              +  S V     +KM+ HNLA V  P +L P  
Sbjct  121   VAQNSDV-----NKMNAHNLAIVFGPTLLRPPD  148


>CDD:395333 pfam00412, LIM, LIM domain.  This family represents two copies 
of the LIM structural domain.
Length=57

 Score = 65.8 bits (161),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (45%), Gaps = 2/58 (3%)

Query  190  CHECGGALRGSYIT-ALDHKYHIEHFTCSVCPTVFGAQDSYYEHEGRVYCHFHYSTQF  246
            C  C   +    +  AL   +H E F C+VC       D +YE +G++YC   Y   F
Sbjct  1    CAGCNRPIYDRELVRALGKVWHPECFRCAVCGKPLTTGD-FYEKDGKLYCKHDYYKLF  57


 Score = 58.9 bits (143),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (52%), Gaps = 8/62 (13%)

Query  126  CKKCGEPLTGQF-VRALGATYHLECFKCEDCGQIVASK-FFPVDAEDGSGQYPLCETDYF  183
            C  C  P+  +  VRALG  +H ECF+C  CG+ + +  F+  D +        C+ DY+
Sbjct  1    CAGCNRPIYDRELVRALGKVWHPECFRCAVCGKPLTTGDFYEKDGK------LYCKHDYY  54

Query  184  RR  185
            + 
Sbjct  55   KL  56



Lambda      K        H        a         alpha
   0.316    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1565182798


Query= TCONS_00012920

Length=1237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459875 pfam00620, RhoGAP, RhoGAP domain. GTPase activator pro...  157     6e-45
CDD:395333 pfam00412, LIM, LIM domain. This family represents two...  65.4    7e-14


>CDD:459875 pfam00620, RhoGAP, RhoGAP domain.  GTPase activator proteins 
towards Rho/Rac/Cdc42-like small GTPases.
Length=148

 Score = 157 bits (399),  Expect = 6e-45, Method: Composition-based stats.
 Identities = 59/153 (39%), Positives = 87/153 (57%), Gaps = 6/153 (4%)

Query  887   PALVDDAVSAMRQMDMSVEGVFRKNGNIRRLKEISELID-NKYDQVDLTKETPVQIAALL  945
             P +V   V  + +  +  EG+FR +G+  R+KE+ E  D      +DL +E    +A+LL
Sbjct  1     PLIVRKCVEYLEKRGLDTEGIFRVSGSASRIKELREAFDRGPDVDLDLEEEDVHVVASLL  60

Query  946   KKFLREMPDPLLTFKLHNLFVISQKIPDPEKQKRLLHLTCCLLPKAHRDTMEVLFAFLNW  1005
             K FLRE+P+PLLTF+L+  F+ + K+PD E++   L      LP A+RDT+  L A LN 
Sbjct  61    KLFLRELPEPLLTFELYEEFIEAAKLPDEEERLEALRELLRKLPPANRDTLRYLLAHLNR  120

Query  1006  TSSFSHVDEDTGSKMDIHNLATVITPNILYPNT  1038
              +  S V     +KM+ HNLA V  P +L P  
Sbjct  121   VAQNSDV-----NKMNAHNLAIVFGPTLLRPPD  148


>CDD:395333 pfam00412, LIM, LIM domain.  This family represents two copies 
of the LIM structural domain.
Length=57

 Score = 65.4 bits (160),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (45%), Gaps = 2/58 (3%)

Query  190  CHECGGALRGSYIT-ALDHKYHIEHFTCSVCPTVFGAQDSYYEHEGRVYCHFHYSTQF  246
            C  C   +    +  AL   +H E F C+VC       D +YE +G++YC   Y   F
Sbjct  1    CAGCNRPIYDRELVRALGKVWHPECFRCAVCGKPLTTGD-FYEKDGKLYCKHDYYKLF  57


 Score = 58.9 bits (143),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (52%), Gaps = 8/62 (13%)

Query  126  CKKCGEPLTGQF-VRALGATYHLECFKCEDCGQIVASK-FFPVDAEDGSGQYPLCETDYF  183
            C  C  P+  +  VRALG  +H ECF+C  CG+ + +  F+  D +        C+ DY+
Sbjct  1    CAGCNRPIYDRELVRALGKVWHPECFRCAVCGKPLTTGDFYEKDGK------LYCKHDYY  54

Query  184  RR  185
            + 
Sbjct  55   KL  56



Lambda      K        H        a         alpha
   0.316    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1591711320


Query= TCONS_00018540

Length=848
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459875 pfam00620, RhoGAP, RhoGAP domain. GTPase activator pro...  154     3e-44


>CDD:459875 pfam00620, RhoGAP, RhoGAP domain.  GTPase activator proteins 
towards Rho/Rac/Cdc42-like small GTPases.
Length=148

 Score = 154 bits (392),  Expect = 3e-44, Method: Composition-based stats.
 Identities = 59/153 (39%), Positives = 87/153 (57%), Gaps = 6/153 (4%)

Query  630  PALVDDAVSAMRQMDMSVEGVFRKNGNIRRLKEISELID-NKYDQVDLTKETPVQIAALL  688
            P +V   V  + +  +  EG+FR +G+  R+KE+ E  D      +DL +E    +A+LL
Sbjct  1    PLIVRKCVEYLEKRGLDTEGIFRVSGSASRIKELREAFDRGPDVDLDLEEEDVHVVASLL  60

Query  689  KKFLREMPDPLLTFKLHNLFVISQKIPDPEKQKRLLHLTCCLLPKAHRDTMEVLFAFLNW  748
            K FLRE+P+PLLTF+L+  F+ + K+PD E++   L      LP A+RDT+  L A LN 
Sbjct  61   KLFLRELPEPLLTFELYEEFIEAAKLPDEEERLEALRELLRKLPPANRDTLRYLLAHLNR  120

Query  749  TSSFSHVDEDTGSKMDIHNLATVITPNILYPNT  781
             +  S V     +KM+ HNLA V  P +L P  
Sbjct  121  VAQNSDV-----NKMNAHNLAIVFGPTLLRPPD  148



Lambda      K        H        a         alpha
   0.318    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1080942042


Query= TCONS_00018542

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463909 pfam13519, VWA_2, von Willebrand factor type A domain      56.5    4e-11


>CDD:463909 pfam13519, VWA_2, von Willebrand factor type A domain.  
Length=103

 Score = 56.5 bits (137),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 45/74 (61%), Gaps = 3/74 (4%)

Query  1    MRAHPQSAVGLMSMGGKGPEVLSTFTSDFGSILAGLHRTKIHGTA-HLSSSIQVAGLALK  59
            +++ P   VGL++ G  GPEVL   T D   IL  L R +  G   +L++++Q+A  ALK
Sbjct  32   LKSLPGDRVGLVTFGD-GPEVLIPLTKDRAKILRALRRLEPKGGGTNLAAALQLARAALK  90

Query  60   HRSEKSQRQRIIVF  73
            HR  K+Q +RI++ 
Sbjct  91   HRR-KNQPRRIVLI  103



Lambda      K        H        a         alpha
   0.308    0.130    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00018543

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463909 pfam13519, VWA_2, von Willebrand factor type A domain      71.9    2e-18


>CDD:463909 pfam13519, VWA_2, von Willebrand factor type A domain.  
Length=103

 Score = 71.9 bits (177),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 39/98 (40%), Positives = 55/98 (56%), Gaps = 9/98 (9%)

Query  6   TMIIVDNSESSRNGDYTSTRWQAQVDAVSVIHSAKMRAHPQSAVGLMSMGGKGPEVLSTF  65
            + ++D S S RNGDY  TR +A  DAV  +    +++ P   VGL++ G  GPEVL   
Sbjct  1   LVFVLDTSGSMRNGDYGPTRLEAAKDAVLAL----LKSLPGDRVGLVTFGD-GPEVLIPL  55

Query  66  TSDFGSILAGLHRTKIHGTA-HLSSSIQLA---LKHRS  99
           T D   IL  L R +  G   +L++++QLA   LKHR 
Sbjct  56  TKDRAKILRALRRLEPKGGGTNLAAALQLARAALKHRR  93



Lambda      K        H        a         alpha
   0.314    0.125    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00012921

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463909 pfam13519, VWA_2, von Willebrand factor type A domain      89.7    3e-23


>CDD:463909 pfam13519, VWA_2, von Willebrand factor type A domain.  
Length=103

 Score = 89.7 bits (223),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 64/109 (59%), Gaps = 7/109 (6%)

Query  6    TMIIVDNSESSRNGDYTSTRWQAQVDAVSVIHSAKMRAHPQSAVGLMSMGGKGPEVLSTF  65
             + ++D S S RNGDY  TR +A  DAV  +    +++ P   VGL++ G  GPEVL   
Sbjct  1    LVFVLDTSGSMRNGDYGPTRLEAAKDAVLAL----LKSLPGDRVGLVTFGD-GPEVLIPL  55

Query  66   TSDFGSILAGLHRTKIHGTA-HLSSSIQVAGLALKHRSEKSQRQRIIVF  113
            T D   IL  L R +  G   +L++++Q+A  ALKHR  K+Q +RI++ 
Sbjct  56   TKDRAKILRALRRLEPKGGGTNLAAALQLARAALKHRR-KNQPRRIVLI  103



Lambda      K        H        a         alpha
   0.308    0.128    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00012922

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463909 pfam13519, VWA_2, von Willebrand factor type A domain      89.7    3e-23


>CDD:463909 pfam13519, VWA_2, von Willebrand factor type A domain.  
Length=103

 Score = 89.7 bits (223),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 64/109 (59%), Gaps = 7/109 (6%)

Query  6    TMIIVDNSESSRNGDYTSTRWQAQVDAVSVIHSAKMRAHPQSAVGLMSMGGKGPEVLSTF  65
             + ++D S S RNGDY  TR +A  DAV  +    +++ P   VGL++ G  GPEVL   
Sbjct  1    LVFVLDTSGSMRNGDYGPTRLEAAKDAVLAL----LKSLPGDRVGLVTFGD-GPEVLIPL  55

Query  66   TSDFGSILAGLHRTKIHGTA-HLSSSIQVAGLALKHRSEKSQRQRIIVF  113
            T D   IL  L R +  G   +L++++Q+A  ALKHR  K+Q +RI++ 
Sbjct  56   TKDRAKILRALRRLEPKGGGTNLAAALQLARAALKHRR-KNQPRRIVLI  103



Lambda      K        H        a         alpha
   0.308    0.128    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00018544

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463909 pfam13519, VWA_2, von Willebrand factor type A domain      80.4    2e-21


>CDD:463909 pfam13519, VWA_2, von Willebrand factor type A domain.  
Length=103

 Score = 80.4 bits (199),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 42/109 (39%), Positives = 63/109 (58%), Gaps = 7/109 (6%)

Query  6    TMIIVDNSESSRNGDYTSTRWQAQVDAVSVIHSAKMRAHPQSAVGLMSMGGKGPEVLSTF  65
             + ++D S S RNGDY  TR +A  DAV  +    +++ P   VGL++ G  GPEVL   
Sbjct  1    LVFVLDTSGSMRNGDYGPTRLEAAKDAVLAL----LKSLPGDRVGLVTFGD-GPEVLIPL  55

Query  66   TSDFGSILAGLHRTKIHGTA-HLSSSIQVAGVCLKHRSEKSQRQRIIVF  113
            T D   IL  L R +  G   +L++++Q+A   LKHR  K+Q +RI++ 
Sbjct  56   TKDRAKILRALRRLEPKGGGTNLAAALQLARAALKHRR-KNQPRRIVLI  103



Lambda      K        H        a         alpha
   0.315    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00018545

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463909 pfam13519, VWA_2, von Willebrand factor type A domain      89.7    3e-23


>CDD:463909 pfam13519, VWA_2, von Willebrand factor type A domain.  
Length=103

 Score = 89.7 bits (223),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 64/109 (59%), Gaps = 7/109 (6%)

Query  6    TMIIVDNSESSRNGDYTSTRWQAQVDAVSVIHSAKMRAHPQSAVGLMSMGGKGPEVLSTF  65
             + ++D S S RNGDY  TR +A  DAV  +    +++ P   VGL++ G  GPEVL   
Sbjct  1    LVFVLDTSGSMRNGDYGPTRLEAAKDAVLAL----LKSLPGDRVGLVTFGD-GPEVLIPL  55

Query  66   TSDFGSILAGLHRTKIHGTA-HLSSSIQVAGLALKHRSEKSQRQRIIVF  113
            T D   IL  L R +  G   +L++++Q+A  ALKHR  K+Q +RI++ 
Sbjct  56   TKDRAKILRALRRLEPKGGGTNLAAALQLARAALKHRR-KNQPRRIVLI  103



Lambda      K        H        a         alpha
   0.308    0.128    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00012923

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00018546

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00018547

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00012924

Length=605


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 766641564


Query= TCONS_00012925

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00012926

Length=519


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0719    0.140     1.90     42.6     43.6 

Effective search space used: 648020248


Query= TCONS_00012927

Length=612


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 777102560


Query= TCONS_00012928

Length=612


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 777102560


Query= TCONS_00018548

Length=442


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 539863808


Query= TCONS_00012929

Length=314


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00012931

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           153     2e-44
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  61.9    4e-12


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 153 bits (388),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 68/205 (33%), Positives = 115/205 (56%), Gaps = 2/205 (1%)

Query  277  CLRRGFLRLKGDMSMTLATVIGNSIMAFIVSSVFYNLDQTTNSFFSRGALLFFAILLNAF  336
             L+R FLR   D S+ L  +I   +MA I  ++F NL        +R  LLFF+IL NAF
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLG-NQQGGLNRPGLLFFSILFNAF  59

Query  337  ASSLEILTLW-QQRPIVEKHDKYALYHPSAEAISSMIVDLPSKFLVSVVFNLILYFMTNL  395
            ++   I  ++ ++R ++ +     LY PSA  ++ ++ +LP   L S++F LI+YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  396  RRTPGHFFVFYLFSVTITLTMSNIFRWIGAISRSMAQAMVPSSIFMMILVIYTGFTIPVR  455
              + G FF+F L  +   L  S++  +I A++ S   A     + ++ L++ +GF IP+ 
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  456  DMHPWFKWLNYLNPIGVSFQLLISN  480
             M  W++W+ YLNP+  + + L +N
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 61.9 bits (151),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 27/105 (26%), Positives = 42/105 (40%), Gaps = 9/105 (9%)

Query  2    HSRFRGEVIYQAETEIHFPQLTAGETLLFAAQARTPANRFPGVSREQYATHMRDVVMTML  61
                R E+ Y  +    FP+LT  E L              G+S+ +      +  +  L
Sbjct  54   RKSLRKEIGYVFQDPQLFPRLTVRENLRLGL-------LLKGLSKREKDARA-EEALEKL  105

Query  62   GLSHTVNTRIGNEYIRGVSGGERKRVSIAETILCGCPLQCWDNST  106
            GL    +  +G      +SGG+R+RV+IA  +L    L   D  T
Sbjct  106  GLGDLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149



Lambda      K        H        a         alpha
   0.325    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599678264


Query= TCONS_00012930

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  75.8    4e-17


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 75.8 bits (187),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 46/140 (33%), Positives = 70/140 (50%), Gaps = 10/140 (7%)

Query  1    MGVTGAGKTSLLDVLANRVTMGVITGEMLVDGR----MRDDSFQRKTGYVQQQDLHLETS  56
            +G  GAGK++LL ++A  ++     G +L+DG+        S +++ GYV Q        
Sbjct  17   VGPNGAGKSTLLKLIAGLLS--PTEGTILLDGQDLTDDERKSLRKEIGYVFQDPQLFPRL  74

Query  57   TVREALIFSATLRQPASTPHKEKLAYVEEVIKMLNMEEYAEAVVGVLGEGLNVEQRKRLT  116
            TVRE L     L+       +EK A  EE ++ L + + A+  VG     L+  QR+R+ 
Sbjct  75   TVRENLRLGLLLK---GLSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVA  131

Query  117  IGVELAAKPALLCFFDEPTS  136
            I   L  KP LL   DEPT+
Sbjct  132  IARALLTKPKLLL-LDEPTA  150



Lambda      K        H        a         alpha
   0.319    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 446726320


Query= TCONS_00012932

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           153     2e-44
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  61.9    4e-12


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 153 bits (388),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 68/205 (33%), Positives = 115/205 (56%), Gaps = 2/205 (1%)

Query  277  CLRRGFLRLKGDMSMTLATVIGNSIMAFIVSSVFYNLDQTTNSFFSRGALLFFAILLNAF  336
             L+R FLR   D S+ L  +I   +MA I  ++F NL        +R  LLFF+IL NAF
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLG-NQQGGLNRPGLLFFSILFNAF  59

Query  337  ASSLEILTLW-QQRPIVEKHDKYALYHPSAEAISSMIVDLPSKFLVSVVFNLILYFMTNL  395
            ++   I  ++ ++R ++ +     LY PSA  ++ ++ +LP   L S++F LI+YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  396  RRTPGHFFVFYLFSVTITLTMSNIFRWIGAISRSMAQAMVPSSIFMMILVIYTGFTIPVR  455
              + G FF+F L  +   L  S++  +I A++ S   A     + ++ L++ +GF IP+ 
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  456  DMHPWFKWLNYLNPIGVSFQLLISN  480
             M  W++W+ YLNP+  + + L +N
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 61.9 bits (151),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 27/105 (26%), Positives = 42/105 (40%), Gaps = 9/105 (9%)

Query  2    HSRFRGEVIYQAETEIHFPQLTAGETLLFAAQARTPANRFPGVSREQYATHMRDVVMTML  61
                R E+ Y  +    FP+LT  E L              G+S+ +      +  +  L
Sbjct  54   RKSLRKEIGYVFQDPQLFPRLTVRENLRLGL-------LLKGLSKREKDARA-EEALEKL  105

Query  62   GLSHTVNTRIGNEYIRGVSGGERKRVSIAETILCGCPLQCWDNST  106
            GL    +  +G      +SGG+R+RV+IA  +L    L   D  T
Sbjct  106  GLGDLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149



Lambda      K        H        a         alpha
   0.325    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599678264


Query= TCONS_00012933

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            94.0    1e-21


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 94.0 bits (234),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 92/407 (23%), Positives = 140/407 (34%), Gaps = 66/407 (16%)

Query  55   IMSNVFLSGFDGTITASAYA-VISSEFNA-ANTASWLTTSYLITSTAFQPLYGRFSDIFG  112
            +    FL+    ++   A   +++ +          L T + +     QPL GR SD FG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  113  RRVSFFTATITFIIGCLGCGIADDIVLLNMMRALTGIGGGGLMTMATIVNSDLIPFKRRG  172
            RR       + F +G L    A  + LL ++R L G+G G L   A  + +D  P + RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  173  MYQALQNGMHGFGSICGASFGGSIVDTVGWRWCFLVQVPIGLFALITGHLVLHLPRHHQT  232
                L +   G G+  G   GG +    GWR  FL+   + L A                
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLA----------------  164

Query  233  FGQGRGFQAILRYVDLSGALLLILGLSSQLIGLSLGGNELPWSSIWVILSLMASLFLLGL  292
                              A+LL+L              E   S I    +L+    L  L
Sbjct  165  ------------------AVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLL  206

Query  293  FMLVEEKTPAVPLIPSRMLRGVMPVSTQIANVCVGMAAYAFLFTLPLLFQVVLLDTPTKA  352
              L                            +  G A +  L  LP L+Q VL  +   A
Sbjct  207  LAL----------------------------LLFGFAFFGLLTYLP-LYQEVLGLSALLA  237

Query  353  GARLAIPSLAAPIGSLIAGVVMSRWGRLAYLVRAGCLLMCIGNLLVMSIKFHDAGWKYLT  412
            G  L +  L   IG L+ G +  R GR   L+ A  LL+     L++      + W  L 
Sbjct  238  GLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLA  297

Query  413  YVIPASLGQGIVYPGILFTFLAAFDHTDHAVSASTVYLIRSLGTVWG  459
             ++    G G+V+P +           +   ++       SLG   G
Sbjct  298  LLL-LGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG  343



Lambda      K        H        a         alpha
   0.326    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00012934

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            76.7    2e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 76.7 bits (189),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 94/260 (36%), Gaps = 22/260 (8%)

Query  4    VFLSGFDGTITASAYA-VISSEFNA-ANTASWLTTSYLITSTAFQPLYGRFSDIFGRRVS  61
             FL+    ++   A   +++ +          L T + +     QPL GR SD FGRR  
Sbjct  5    AFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRV  64

Query  62   FFTATITFIIGCLGCGIADDIVLLNMMRALTGIGGGGLMTMGKLPSPPAGGPPHSHGPAT  121
                 + F +G L    A  + LL ++R L G+G G L                      
Sbjct  65   LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAA-----------------L  107

Query  122  IVNSDLIPFKRRGMYQALQNGMHGFGSICGASFGGSIVDTVGWRWCFLVQVPIGLFALIT  181
             + +D  P + RG    L +   G G+  G   GG +    GWR  FL+   + L A + 
Sbjct  108  ALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVL  167

Query  182  GHLVLHLPRHHQTFGQGRGFQAI---LRYVDLSGALLLILGLSSQLIGLSLGGNELPWSS  238
              L    P   +         ++    + +     L L+L L             LP   
Sbjct  168  LLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQ  227

Query  239  IWVILSLMASLFLLGLFMLV  258
              + LS + +  LLGL  L+
Sbjct  228  EVLGLSALLAGLLLGLGGLL  247



Lambda      K        H        a         alpha
   0.326    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00012935

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            85.2    9e-19


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 85.2 bits (211),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 92/403 (23%), Positives = 139/403 (34%), Gaps = 66/403 (16%)

Query  4    VFLSGFDGTITASAYA-VISSEFNA-ANTASWLTTSYLITSTAFQPLYGRFSDIFGRRVS  61
             FL+    ++   A   +++ +          L T + +     QPL GR SD FGRR  
Sbjct  5    AFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRV  64

Query  62   FFTATITFIIGCLGCGIADDIVLLNMMRALTGIGGGGLMTMATIVNSDLIPFKRRGMYQA  121
                 + F +G L    A  + LL ++R L G+G G L   A  + +D  P + RG    
Sbjct  65   LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALG  124

Query  122  LQNGMHGFGSICGASFGGSIVDTVGWRWCFLVQVPIGLFALITGHLVLHLPRHHQTFGQG  181
            L +   G G+  G   GG +    GWR  FL+   + L A                    
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLA--------------------  164

Query  182  RGFQAILRYVDLSGALLLILGLSSQLIGLSLGGNELPWSSIWVILSLMASLFLLGLFMLV  241
                          A+LL+L              E   S I    +L+    L  L  L 
Sbjct  165  --------------AVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLAL-  209

Query  242  EEKTPAVPLIPSRMLRGVMPVSTQIANVCVGMAAYAFLFTLPLLFQVVLLDTPTKAGARL  301
                                       +  G A +  L  LP L+Q VL  +   AG  L
Sbjct  210  ---------------------------LLFGFAFFGLLTYLP-LYQEVLGLSALLAGLLL  241

Query  302  AIPSLAAPIGSLIAGVVMSRWGRLAYLVRAGCLLMCIGNLLVMSIKFHDAGWKYLTYVIP  361
             +  L   IG L+ G +  R GR   L+ A  LL+     L++      + W  L  ++ 
Sbjct  242  GLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLL-  300

Query  362  ASLGQGIVYPGILFTFLAAFDHTDHAVSASTVYLIRSLGTVWG  404
               G G+V+P +           +   ++       SLG   G
Sbjct  301  LGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG  343



Lambda      K        H        a         alpha
   0.327    0.141    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00018549

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            91.7    2e-21


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 91.7 bits (228),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 61/247 (25%), Positives = 96/247 (39%), Gaps = 5/247 (2%)

Query  55   IMSNVFLSGFDGTITASAYA-VISSEFNA-ANTASWLTTSYLITSTAFQPLYGRFSDIFG  112
            +    FL+    ++   A   +++ +          L T + +     QPL GR SD FG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  113  RRVSFFTATITFIIGCLGCGIADDIVLLNMMRALTGIGGGGLMTMATIVNSDLIPFKRRG  172
            RR       + F +G L    A  + LL ++R L G+G G L   A  + +D  P + RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  173  MYQALQNGMHGFGSICGASFGGSIVDTVGWRWCFLVQVPIGLFALITGHLVLHLPRHHQT  232
                L +   G G+  G   GG +    GWR  FL+   + L A +   L    P   + 
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRP  180

Query  233  FGQGRGFQAI---LRYVDLSGALLLILGLSSQLIGLSLGGNELPWSSIWVILSLMASLFL  289
                    ++    + +     L L+L L             LP     + LS + +  L
Sbjct  181  KPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLL  240

Query  290  LGLFMLV  296
            LGL  L+
Sbjct  241  LGLGGLL  247



Lambda      K        H        a         alpha
   0.325    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00012937

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            91.7    2e-21


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 91.7 bits (228),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 61/247 (25%), Positives = 96/247 (39%), Gaps = 5/247 (2%)

Query  55   IMSNVFLSGFDGTITASAYA-VISSEFNA-ANTASWLTTSYLITSTAFQPLYGRFSDIFG  112
            +    FL+    ++   A   +++ +          L T + +     QPL GR SD FG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  113  RRVSFFTATITFIIGCLGCGIADDIVLLNMMRALTGIGGGGLMTMATIVNSDLIPFKRRG  172
            RR       + F +G L    A  + LL ++R L G+G G L   A  + +D  P + RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  173  MYQALQNGMHGFGSICGASFGGSIVDTVGWRWCFLVQVPIGLFALITGHLVLHLPRHHQT  232
                L +   G G+  G   GG +    GWR  FL+   + L A +   L    P   + 
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRP  180

Query  233  FGQGRGFQAI---LRYVDLSGALLLILGLSSQLIGLSLGGNELPWSSIWVILSLMASLFL  289
                    ++    + +     L L+L L             LP     + LS + +  L
Sbjct  181  KPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLL  240

Query  290  LGLFMLV  296
            LGL  L+
Sbjct  241  LGLGGLL  247



Lambda      K        H        a         alpha
   0.325    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00012936

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            91.7    2e-21


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 91.7 bits (228),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 61/247 (25%), Positives = 96/247 (39%), Gaps = 5/247 (2%)

Query  55   IMSNVFLSGFDGTITASAYA-VISSEFNA-ANTASWLTTSYLITSTAFQPLYGRFSDIFG  112
            +    FL+    ++   A   +++ +          L T + +     QPL GR SD FG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  113  RRVSFFTATITFIIGCLGCGIADDIVLLNMMRALTGIGGGGLMTMATIVNSDLIPFKRRG  172
            RR       + F +G L    A  + LL ++R L G+G G L   A  + +D  P + RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  173  MYQALQNGMHGFGSICGASFGGSIVDTVGWRWCFLVQVPIGLFALITGHLVLHLPRHHQT  232
                L +   G G+  G   GG +    GWR  FL+   + L A +   L    P   + 
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRP  180

Query  233  FGQGRGFQAI---LRYVDLSGALLLILGLSSQLIGLSLGGNELPWSSIWVILSLMASLFL  289
                    ++    + +     L L+L L             LP     + LS + +  L
Sbjct  181  KPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLL  240

Query  290  LGLFMLV  296
            LGL  L+
Sbjct  241  LGLGGLL  247



Lambda      K        H        a         alpha
   0.325    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00018550

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            91.7    2e-21


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 91.7 bits (228),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 61/247 (25%), Positives = 96/247 (39%), Gaps = 5/247 (2%)

Query  55   IMSNVFLSGFDGTITASAYA-VISSEFNA-ANTASWLTTSYLITSTAFQPLYGRFSDIFG  112
            +    FL+    ++   A   +++ +          L T + +     QPL GR SD FG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  113  RRVSFFTATITFIIGCLGCGIADDIVLLNMMRALTGIGGGGLMTMATIVNSDLIPFKRRG  172
            RR       + F +G L    A  + LL ++R L G+G G L   A  + +D  P + RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  173  MYQALQNGMHGFGSICGASFGGSIVDTVGWRWCFLVQVPIGLFALITGHLVLHLPRHHQT  232
                L +   G G+  G   GG +    GWR  FL+   + L A +   L    P   + 
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRP  180

Query  233  FGQGRGFQAI---LRYVDLSGALLLILGLSSQLIGLSLGGNELPWSSIWVILSLMASLFL  289
                    ++    + +     L L+L L             LP     + LS + +  L
Sbjct  181  KPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLL  240

Query  290  LGLFMLV  296
            LGL  L+
Sbjct  241  LGLGGLL  247



Lambda      K        H        a         alpha
   0.325    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00012938

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            82.9    1e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 82.9 bits (205),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 95/243 (39%), Gaps = 5/243 (2%)

Query  4    VFLSGFDGTITASAYA-VISSEFNA-ANTASWLTTSYLITSTAFQPLYGRFSDIFGRRVS  61
             FL+    ++   A   +++ +          L T + +     QPL GR SD FGRR  
Sbjct  5    AFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRV  64

Query  62   FFTATITFIIGCLGCGIADDIVLLNMMRALTGIGGGGLMTMATIVNSDLIPFKRRGMYQA  121
                 + F +G L    A  + LL ++R L G+G G L   A  + +D  P + RG    
Sbjct  65   LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALG  124

Query  122  LQNGMHGFGSICGASFGGSIVDTVGWRWCFLVQVPIGLFALITGHLVLHLPRHHQTFGQG  181
            L +   G G+  G   GG +    GWR  FL+   + L A +   L    P   +     
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAE  184

Query  182  RGFQAI---LRYVDLSGALLLILGLSSQLIGLSLGGNELPWSSIWVILSLMASLFLLGLF  238
                ++    + +     L L+L L             LP     + LS + +  LLGL 
Sbjct  185  EARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLG  244

Query  239  MLV  241
             L+
Sbjct  245  GLL  247



Lambda      K        H        a         alpha
   0.327    0.142    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00012939

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            96.7    2e-22


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 96.7 bits (241),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 92/407 (23%), Positives = 140/407 (34%), Gaps = 66/407 (16%)

Query  55   IMSNVFLSGFDGTITASAYA-VISSEFNA-ANTASWLTTSYLITSTAFQPLYGRFSDIFG  112
            +    FL+    ++   A   +++ +          L T + +     QPL GR SD FG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  113  RRVSFFTATITFIIGCLGCGIADDIVLLNMMRALTGIGGGGLMTMATIVNSDLIPFKRRG  172
            RR       + F +G L    A  + LL ++R L G+G G L   A  + +D  P + RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  173  MYQALQNGMHGFGSICGASFGGSIVDTVGWRWCFLVQVPIGLFALITGHLVLHLPRHHQT  232
                L +   G G+  G   GG +    GWR  FL+   + L A                
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLA----------------  164

Query  233  FGQGRGFQAILRYVDLSGALLLILGLSSQLIGLSLGGNELPWSSIWVILSLMASLFLLGL  292
                              A+LL+L              E   S I    +L+    L  L
Sbjct  165  ------------------AVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLL  206

Query  293  FMLVEEKTPAVPLIPSRMLRGVMPVSTQIANVCVGMAAYAFLFTLPLLFQVVLLDTPTKA  352
              L                            +  G A +  L  LP L+Q VL  +   A
Sbjct  207  LAL----------------------------LLFGFAFFGLLTYLP-LYQEVLGLSALLA  237

Query  353  GARLAIPSLAAPIGSLIAGVVMSRWGRLAYLVRAGCLLMCIGNLLVMSIKFHDAGWKYLT  412
            G  L +  L   IG L+ G +  R GR   L+ A  LL+     L++      + W  L 
Sbjct  238  GLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLA  297

Query  413  YVIPASLGQGIVYPGILFTFLAAFDHTDHAVSASTVYLIRSLGTVWG  459
             ++    G G+V+P +           +   ++       SLG   G
Sbjct  298  LLL-LGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG  343



Lambda      K        H        a         alpha
   0.326    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 697897876


Query= TCONS_00018551

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00012940

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              64.3    2e-12


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 64.3 bits (157),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 51/210 (24%), Positives = 98/210 (47%), Gaps = 4/210 (2%)

Query  2    LSGLDATLHLAEECLEPERIVPKAVLVTVVVGFLTAFPFSIAIIYSYRDVESSLSSPTGF  61
             +G ++  +++EE    +R VPKA+ + V++  +     +IA      D E +LSS  G 
Sbjct  201  FTGFESAANVSEE--VKKRNVPKAIFIGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQ  258

Query  62   PIYFIWEKATRSPTAATVFMAALVVISSIALNAVHQTASRLTWSFARDNALFFSRRLASV  121
                +  +A      A + +  L +    A+N     ASRL ++ ARD  L FSR  A V
Sbjct  259  VAA-LLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKV  317

Query  122  HPSLNVPVYALLLNGLLVLLVGIIYVCSTTAFNAFIGTTVIVAQISFAVPAALLIYRRRS  181
            +     P+ A++L  +L L++ ++++ S  A+NA +  +     +S+ +P   L+  R+ 
Sbjct  318  NKF-GSPIRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKK  376

Query  182  HEYLPPSRPFKVMHVVGYVCNVMTVVWAVV  211
               L        + + G + ++  +V    
Sbjct  377  RPDLGRIPGRWPVAIFGILFSLFLIVALFF  406



Lambda      K        H        a         alpha
   0.330    0.140    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00012941

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              118     1e-29
CDD:366028 pfam00324, AA_permease, Amino acid permease                79.3    3e-16


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 118 bits (299),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 103/446 (23%), Positives = 185/446 (41%), Gaps = 29/446 (7%)

Query  42   FSILSIIAVGYNISNSWVAIAASFAIAVQSGGAVSLLYGIVAVTIAMLCTGVTLAELASV  101
              +LS  A+        +      A  V SGG   +++G +A  I  L  G+  AEL+S 
Sbjct  1    LGLLSAFALVIGSV---IGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSA  57

Query  102  YPTAGGQYHFTSILASERWSRHLSYFSGLAAVFSWITLAASIAVASTQALMAVVIRWQPE  161
             P +GG Y +      +      ++ +G +  F+++   AS A  +   L++      P+
Sbjct  58   LPRSGGIYVYLENAFGKFV----AFLAGWSNWFAYVLGLASSASVAASYLLSA---LGPD  110

Query  162  YVPQAWHYFLVYQLFNIAMVVHNIFLTNRTLWVYNVGFLLSLGTFLTITVTCP---ARSH  218
             VP  W  + +     I   + NI     +  + N+  +L L   L + +      A   
Sbjct  111  LVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGG  170

Query  219  TTVDSFAIWTQFINGSGGWPNGISFLTGLSTPQFMLSGLDATLHLAEECLEPERIVPKAV  278
                    W  F     GWP       G     +  +G ++  +++EE    +R VPKA+
Sbjct  171  GFNLLSGEWHTF--FPDGWP---GVFAGFLGVLWSFTGFESAANVSEE--VKKRNVPKAI  223

Query  279  LVTVVVGFLTAFPFSIAIIYSYRDVESSLSSPTGFPIYFIWEKATRSPTAATVFMAALVV  338
             + V++  +     +IA      D E +LSS  G     +  +A      A + +  L +
Sbjct  224  FIGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAA-LLFQAVGGKWGAIIVVILLAL  282

Query  339  ISSIALNAVHQTASRLTWSFARDNALFFSRRLASVHPSLNVPVYALLLNGLLVLLVGIIY  398
                A+N     ASRL ++ ARD  L FSR  A V+     P+ A++L  +L L++ +++
Sbjct  283  SLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKF-GSPIRAIILTAILSLILLLLF  341

Query  399  VCSTTAFNAFIGTTVIVAQISFAVPAALLIYRRRSHEYLPPSRPFKVMHVVGYVCNVMTV  458
            + S  A+NA +  +     +S+ +P   L+  R+    L        + + G + ++  +
Sbjct  342  LLSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPDLGRIPGRWPVAIFGILFSLFLI  401

Query  459  VWAVVITIFFTFPTTFPVTGGNMNYA  484
            V           P   P TG ++NYA
Sbjct  402  VALFF-------PPVGPATGSSLNYA  420


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 79.3 bits (196),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 78/457 (17%), Positives = 170/457 (37%), Gaps = 37/457 (8%)

Query  42   FSILSIIAVGYNISNSWVAIAASFAIAVQSGGAVSLLYGIVAVTIAMLCTGVTLAELASV  101
             ++  +I  G  + +  V         +   G    L G +   + +    ++L E+++ 
Sbjct  5    IALGGVIGTGLFVGSGSV---------LGQAGPAGALLGYLISGVVIFLVMLSLGEISTN  55

Query  102  YPTAGGQYHFTSILASERWSRHLSYFSGLAAVFSWITLAASIAVASTQALMAVVIRWQP-  160
             P +GG Y +    AS      L + +G     SWIT+ A        A   ++  W+  
Sbjct  56   GPVSGGFYTY----ASRFLGPSLGFATGWNYWLSWITVLA----LELTAASILIQFWELV  107

Query  161  EYVPQAWHYFLVYQLFNIAMVVHNIFLTNRTLWVYNVGFLLSLGTFLTITVTCPARSHTT  220
              +P  W +  V+ +    + +  +       + + +  ++++  F+ + +   +  +  
Sbjct  108  PDIPYLWVWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPN  167

Query  221  VDSFAIWTQFINGSGGWPNGI--SFLTGLSTPQFMLSGLDATLHLAEECLEPERIVPKAV  278
              +   +     G   +P G    F++      F  +G++     A E   PE+ +PKA+
Sbjct  168  DGAIFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAI  227

Query  279  LVTVV--VGFLTAFPFSIAIIYSYRDVESSLSSPTGFPIYFIWEKATRSPTAATVFMAAL  336
            L  +     F      +I ++  + D      S +    + I+ K       A +  A +
Sbjct  228  LQVIWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVI  287

Query  337  VVISSIALNAVHQTASRLTWSFARDNALFFSRRLASVHPSLNVPVYALLLNGLLVLLVGI  396
            +  +  A N+   + SR+ +S ARD       +         VP+ A+L++ ++ LL  +
Sbjct  288  LTAALSAANSSLYSGSRMLYSLARDGLA---PKFLKKVDKRGVPLRAILVSMVISLLALL  344

Query  397  I-YVCSTTAFNAFIGTTVIVAQISFAVPAALLI-------YRRRSHEYLPPSRPFKVMHV  448
            +  +     FN  +  + +   I + + +   +       Y+ RS + LP   P   +  
Sbjct  345  LASLNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPL--  402

Query  449  VGYVCNVMTVVWAVVITIFFTFPTTFPVTGGNMNYAS  485
               V   +  +  ++I  F       P    N    S
Sbjct  403  --GVILGLAAIIIILIIQFLYAFLPVPGGPKNWGAGS  437



Lambda      K        H        a         alpha
   0.326    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00012942

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00012945

Length=335


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.123    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00018556

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00018557

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.144    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00012946

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimer...  95.9    7e-27


>CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family. 
 This enzyme catalyzes the conversion of D-ribulose 5-phosphate 
into D-xylulose 5-phosphate.
Length=198

 Score = 95.9 bits (239),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 46/77 (60%), Gaps = 8/77 (10%)

Query  6   IIAPSILSADFAVLGNECSTKIAQGADWLHVDIMDGHFVPNMTFGAPVVTKIRSHVDRPT  65
            IAPSILSADFA LG E       GADWLHVD+MDGHFVPN+T G  VV  +R   D P 
Sbjct  1   KIAPSILSADFARLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPLTDLP-  59

Query  66  QALGKGTFDCHMMIMEV  82
                   D H+M+ E 
Sbjct  60  -------LDVHLMVEEP  69



Lambda      K        H        a         alpha
   0.322    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00018558

Length=112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimer...  101     8e-29


>CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family. 
 This enzyme catalyzes the conversion of D-ribulose 5-phosphate 
into D-xylulose 5-phosphate.
Length=198

 Score = 101 bits (253),  Expect = 8e-29, Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 50/69 (72%), Gaps = 4/69 (6%)

Query  7    MVLVMTVHPGFGGQKFMASELPKVKALRERYP----DLNIEVDGGLGLGTIDQAADAGAN  62
            +VL+M+V+PGFGGQ F+ S L K++ +R+       D  IEVDGG+ L  I Q A+AGA+
Sbjct  130  LVLLMSVNPGFGGQSFIPSVLEKIRKVRKMIDERGLDTLIEVDGGIKLDNIPQIAEAGAD  189

Query  63   VIVAGSAVF  71
            VIVAGSAVF
Sbjct  190  VIVAGSAVF  198



Lambda      K        H        a         alpha
   0.320    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00018560

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.141    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00018561

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimer...  95.9    7e-27


>CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family. 
 This enzyme catalyzes the conversion of D-ribulose 5-phosphate 
into D-xylulose 5-phosphate.
Length=198

 Score = 95.9 bits (239),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 46/77 (60%), Gaps = 8/77 (10%)

Query  6   IIAPSILSADFAVLGNECSTKIAQGADWLHVDIMDGHFVPNMTFGAPVVTKIRSHVDRPT  65
            IAPSILSADFA LG E       GADWLHVD+MDGHFVPN+T G  VV  +R   D P 
Sbjct  1   KIAPSILSADFARLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPLTDLP-  59

Query  66  QALGKGTFDCHMMIMEV  82
                   D H+M+ E 
Sbjct  60  -------LDVHLMVEEP  69



Lambda      K        H        a         alpha
   0.322    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00018562

Length=93
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimer...  101     3e-29


>CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family. 
 This enzyme catalyzes the conversion of D-ribulose 5-phosphate 
into D-xylulose 5-phosphate.
Length=198

 Score = 101 bits (254),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 50/69 (72%), Gaps = 4/69 (6%)

Query  7    MVLVMTVHPGFGGQKFMASELPKVKALRERYP----DLNIEVDGGLGLGTIDQAADAGAN  62
            +VL+M+V+PGFGGQ F+ S L K++ +R+       D  IEVDGG+ L  I Q A+AGA+
Sbjct  130  LVLLMSVNPGFGGQSFIPSVLEKIRKVRKMIDERGLDTLIEVDGGIKLDNIPQIAEAGAD  189

Query  63   VIVAGSAVF  71
            VIVAGSAVF
Sbjct  190  VIVAGSAVF  198



Lambda      K        H        a         alpha
   0.319    0.137    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00018563

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimer...  95.9    7e-27


>CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family. 
 This enzyme catalyzes the conversion of D-ribulose 5-phosphate 
into D-xylulose 5-phosphate.
Length=198

 Score = 95.9 bits (239),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 46/77 (60%), Gaps = 8/77 (10%)

Query  6   IIAPSILSADFAVLGNECSTKIAQGADWLHVDIMDGHFVPNMTFGAPVVTKIRSHVDRPT  65
            IAPSILSADFA LG E       GADWLHVD+MDGHFVPN+T G  VV  +R   D P 
Sbjct  1   KIAPSILSADFARLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPLTDLP-  59

Query  66  QALGKGTFDCHMMIMEV  82
                   D H+M+ E 
Sbjct  60  -------LDVHLMVEEP  69



Lambda      K        H        a         alpha
   0.322    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00012948

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.136    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00012950

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimer...  95.9    7e-27


>CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family. 
 This enzyme catalyzes the conversion of D-ribulose 5-phosphate 
into D-xylulose 5-phosphate.
Length=198

 Score = 95.9 bits (239),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 46/77 (60%), Gaps = 8/77 (10%)

Query  6   IIAPSILSADFAVLGNECSTKIAQGADWLHVDIMDGHFVPNMTFGAPVVTKIRSHVDRPT  65
            IAPSILSADFA LG E       GADWLHVD+MDGHFVPN+T G  VV  +R   D P 
Sbjct  1   KIAPSILSADFARLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPLTDLP-  59

Query  66  QALGKGTFDCHMMIMEV  82
                   D H+M+ E 
Sbjct  60  -------LDVHLMVEEP  69



Lambda      K        H        a         alpha
   0.322    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00018565

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimer...  95.9    7e-27


>CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family. 
 This enzyme catalyzes the conversion of D-ribulose 5-phosphate 
into D-xylulose 5-phosphate.
Length=198

 Score = 95.9 bits (239),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 46/77 (60%), Gaps = 8/77 (10%)

Query  6   IIAPSILSADFAVLGNECSTKIAQGADWLHVDIMDGHFVPNMTFGAPVVTKIRSHVDRPT  65
            IAPSILSADFA LG E       GADWLHVD+MDGHFVPN+T G  VV  +R   D P 
Sbjct  1   KIAPSILSADFARLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPLTDLP-  59

Query  66  QALGKGTFDCHMMIMEV  82
                   D H+M+ E 
Sbjct  60  -------LDVHLMVEEP  69



Lambda      K        H        a         alpha
   0.322    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00018564

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimer...  95.9    7e-27


>CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family. 
 This enzyme catalyzes the conversion of D-ribulose 5-phosphate 
into D-xylulose 5-phosphate.
Length=198

 Score = 95.9 bits (239),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 46/77 (60%), Gaps = 8/77 (10%)

Query  6   IIAPSILSADFAVLGNECSTKIAQGADWLHVDIMDGHFVPNMTFGAPVVTKIRSHVDRPT  65
            IAPSILSADFA LG E       GADWLHVD+MDGHFVPN+T G  VV  +R   D P 
Sbjct  1   KIAPSILSADFARLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPLTDLP-  59

Query  66  QALGKGTFDCHMMIMEV  82
                   D H+M+ E 
Sbjct  60  -------LDVHLMVEEP  69



Lambda      K        H        a         alpha
   0.322    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00012951

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimer...  95.9    7e-27


>CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family. 
 This enzyme catalyzes the conversion of D-ribulose 5-phosphate 
into D-xylulose 5-phosphate.
Length=198

 Score = 95.9 bits (239),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 46/77 (60%), Gaps = 8/77 (10%)

Query  6   IIAPSILSADFAVLGNECSTKIAQGADWLHVDIMDGHFVPNMTFGAPVVTKIRSHVDRPT  65
            IAPSILSADFA LG E       GADWLHVD+MDGHFVPN+T G  VV  +R   D P 
Sbjct  1   KIAPSILSADFARLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPLTDLP-  59

Query  66  QALGKGTFDCHMMIMEV  82
                   D H+M+ E 
Sbjct  60  -------LDVHLMVEEP  69



Lambda      K        H        a         alpha
   0.322    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00012952

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00018567

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimer...  95.9    7e-27


>CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family. 
 This enzyme catalyzes the conversion of D-ribulose 5-phosphate 
into D-xylulose 5-phosphate.
Length=198

 Score = 95.9 bits (239),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 46/77 (60%), Gaps = 8/77 (10%)

Query  6   IIAPSILSADFAVLGNECSTKIAQGADWLHVDIMDGHFVPNMTFGAPVVTKIRSHVDRPT  65
            IAPSILSADFA LG E       GADWLHVD+MDGHFVPN+T G  VV  +R   D P 
Sbjct  1   KIAPSILSADFARLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPLTDLP-  59

Query  66  QALGKGTFDCHMMIMEV  82
                   D H+M+ E 
Sbjct  60  -------LDVHLMVEEP  69



Lambda      K        H        a         alpha
   0.322    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0745    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00018566

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimer...  95.9    7e-27


>CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family. 
 This enzyme catalyzes the conversion of D-ribulose 5-phosphate 
into D-xylulose 5-phosphate.
Length=198

 Score = 95.9 bits (239),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 46/77 (60%), Gaps = 8/77 (10%)

Query  6   IIAPSILSADFAVLGNECSTKIAQGADWLHVDIMDGHFVPNMTFGAPVVTKIRSHVDRPT  65
            IAPSILSADFA LG E       GADWLHVD+MDGHFVPN+T G  VV  +R   D P 
Sbjct  1   KIAPSILSADFARLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPLTDLP-  59

Query  66  QALGKGTFDCHMMIMEV  82
                   D H+M+ E 
Sbjct  60  -------LDVHLMVEEP  69



Lambda      K        H        a         alpha
   0.322    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00018568

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimer...  95.9    7e-27


>CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family. 
 This enzyme catalyzes the conversion of D-ribulose 5-phosphate 
into D-xylulose 5-phosphate.
Length=198

 Score = 95.9 bits (239),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 46/77 (60%), Gaps = 8/77 (10%)

Query  6   IIAPSILSADFAVLGNECSTKIAQGADWLHVDIMDGHFVPNMTFGAPVVTKIRSHVDRPT  65
            IAPSILSADFA LG E       GADWLHVD+MDGHFVPN+T G  VV  +R   D P 
Sbjct  1   KIAPSILSADFARLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPLTDLP-  59

Query  66  QALGKGTFDCHMMIMEV  82
                   D H+M+ E 
Sbjct  60  -------LDVHLMVEEP  69



Lambda      K        H        a         alpha
   0.322    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00012953

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimer...  95.9    7e-27


>CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family. 
 This enzyme catalyzes the conversion of D-ribulose 5-phosphate 
into D-xylulose 5-phosphate.
Length=198

 Score = 95.9 bits (239),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 46/77 (60%), Gaps = 8/77 (10%)

Query  6   IIAPSILSADFAVLGNECSTKIAQGADWLHVDIMDGHFVPNMTFGAPVVTKIRSHVDRPT  65
            IAPSILSADFA LG E       GADWLHVD+MDGHFVPN+T G  VV  +R   D P 
Sbjct  1   KIAPSILSADFARLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPLTDLP-  59

Query  66  QALGKGTFDCHMMIMEV  82
                   D H+M+ E 
Sbjct  60  -------LDVHLMVEEP  69



Lambda      K        H        a         alpha
   0.322    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00018569

Length=112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimer...  101     8e-29


>CDD:395672 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family. 
 This enzyme catalyzes the conversion of D-ribulose 5-phosphate 
into D-xylulose 5-phosphate.
Length=198

 Score = 101 bits (253),  Expect = 8e-29, Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 50/69 (72%), Gaps = 4/69 (6%)

Query  7    MVLVMTVHPGFGGQKFMASELPKVKALRERYP----DLNIEVDGGLGLGTIDQAADAGAN  62
            +VL+M+V+PGFGGQ F+ S L K++ +R+       D  IEVDGG+ L  I Q A+AGA+
Sbjct  130  LVLLMSVNPGFGGQSFIPSVLEKIRKVRKMIDERGLDTLIEVDGGIKLDNIPQIAEAGAD  189

Query  63   VIVAGSAVF  71
            VIVAGSAVF
Sbjct  190  VIVAGSAVF  198



Lambda      K        H        a         alpha
   0.320    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00012954

Length=850
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429512 pfam07522, DRMBL, DNA repair metallo-beta-lactamase. T...  158     4e-46


>CDD:429512 pfam07522, DRMBL, DNA repair metallo-beta-lactamase.  The metallo-beta-lactamase 
fold contains five sequence motifs. The 
first four motifs are found in pfam00753 and are common to all 
metallo-beta-lactamases. The fifth motif appears to be specific 
to function. This entry represents the fifth motif from 
metallo-beta-lactamases involved in DNA repair.
Length=108

 Score = 158 bits (401),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 54/130 (42%), Positives = 66/130 (51%), Gaps = 22/130 (17%)

Query  690  PELSSLLTDNPAEAQVHMQTLFEIRAETLADYLDSMKPHFSRVVGFRPTGWTYRPPTGRT  749
            PE+ SLLT +P   Q+H+  + ++  E L DYL + K HF  V+  RPTGWTYRPP    
Sbjct  1    PEILSLLTTDPLSTQIHVVPMPKLSYEALLDYLTARKDHFDSVLAIRPTGWTYRPPKTEV  60

Query  750  LDNPPVSTVLHSPQWKTPFSARDLTPQRGSTRESACYGVPYSEHSSFRELTMFCCALRIG  809
             D          P  +   +                YGVPYSEHSSF EL  F   LR  
Sbjct  61   SD-------RIGPSIRGRIT---------------IYGVPYSEHSSFDELKEFVQFLRPK  98

Query  810  RIIPTVNVGS  819
            +IIPTVNVG 
Sbjct  99   KIIPTVNVGG  108



Lambda      K        H        a         alpha
   0.314    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1083813070


Query= TCONS_00018571

Length=98
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426258 pfam01423, LSM, LSM domain. The LSM domain contains Sm...  54.4    5e-12


>CDD:426258 pfam01423, LSM, LSM domain.  The LSM domain contains Sm proteins 
as well as other related LSM (Like Sm) proteins. The U1, 
U2, U4/U6, and U5 small nuclear ribonucleoprotein particles 
(snRNPs) involved in pre-mRNA splicing contain seven Sm proteins 
(B/B', D1, D2, D3, E, F and G) in common, which assemble 
around the Sm site present in four of the major spliceosomal 
small nuclear RNAs. The U6 snRNP binds to the LSM (Like 
Sm) proteins. Sm proteins are also found in archaebacteria, 
which do not have any splicing apparatus suggesting a more general 
role for Sm proteins. All Sm proteins contain a common 
sequence motif in two segments, Sm1 and Sm2, separated by 
a short variable linker. This family also includes the bacterial 
Hfq (host factor Q) proteins. Hfq are also RNA-binding 
proteins, that form hexameric rings.
Length=66

 Score = 54.4 bits (132),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (3%)

Query  5   SFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNMFIRG  64
            F K L  + V +ELKN   +RGTLK  DQ++N+ LDDV+    D    +  +  + IRG
Sbjct  1   KFLKKLLGKRVLVELKNGRELRGTLKGFDQFMNLVLDDVEETIKDG--EVRKLGLVLIRG  58

Query  65  SVVRYVML  72
           + +  +  
Sbjct  59  NNIVLISP  66



Lambda      K        H        a         alpha
   0.322    0.138    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00018572

Length=98
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426258 pfam01423, LSM, LSM domain. The LSM domain contains Sm...  54.4    5e-12


>CDD:426258 pfam01423, LSM, LSM domain.  The LSM domain contains Sm proteins 
as well as other related LSM (Like Sm) proteins. The U1, 
U2, U4/U6, and U5 small nuclear ribonucleoprotein particles 
(snRNPs) involved in pre-mRNA splicing contain seven Sm proteins 
(B/B', D1, D2, D3, E, F and G) in common, which assemble 
around the Sm site present in four of the major spliceosomal 
small nuclear RNAs. The U6 snRNP binds to the LSM (Like 
Sm) proteins. Sm proteins are also found in archaebacteria, 
which do not have any splicing apparatus suggesting a more general 
role for Sm proteins. All Sm proteins contain a common 
sequence motif in two segments, Sm1 and Sm2, separated by 
a short variable linker. This family also includes the bacterial 
Hfq (host factor Q) proteins. Hfq are also RNA-binding 
proteins, that form hexameric rings.
Length=66

 Score = 54.4 bits (132),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (3%)

Query  5   SFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNMFIRG  64
            F K L  + V +ELKN   +RGTLK  DQ++N+ LDDV+    D    +  +  + IRG
Sbjct  1   KFLKKLLGKRVLVELKNGRELRGTLKGFDQFMNLVLDDVEETIKDG--EVRKLGLVLIRG  58

Query  65  SVVRYVML  72
           + +  +  
Sbjct  59  NNIVLISP  66



Lambda      K        H        a         alpha
   0.322    0.138    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00018573

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  327     9e-108


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 327 bits (840),  Expect = 9e-108, Method: Composition-based stats.
 Identities = 132/487 (27%), Positives = 209/487 (43%), Gaps = 40/487 (8%)

Query  37   PSPRFAAFSNLWLLLQ-ARRGRRFLKVDEAHKKYGKLVRIAPKH---VSIADDAAIQAIY  92
            P P          LLQ  R+G       +  KKYG + R+       V ++   A++ + 
Sbjct  2    PGPP--PLPLFGNLLQLGRKGNLHSVFTKLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVL  59

Query  93   GHGNGFLKADFYDAFVSIRRGLFNTRDRA----EHTRK-RKTVSHTFSMKSIGQFEQYIH  147
                        + + +  RG F  +          R+ R+ ++ TF+      FE  + 
Sbjct  60   IKKGEEFSGRPDEPWFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGKLSFEPRVE  119

Query  148  QNVELFVQQWTKLAKLNGNPRSGYATIDALNWFNYLAFDIIGDLAFGAPFGMLEKGKDIA  207
            +     V++  K A   G        ID  +     A ++I  + FG  FG LE  K   
Sbjct  120  EEARDLVEKLRKTAGEPG-------VIDITDLLFRAALNVICSILFGERFGSLEDPKF--  170

Query  208  EMRKTPDSEPTYVQAVEVLNRRGEVSATLGCLPRLIPYAKYLPDRFFKDGVQAVENLAGI  267
                        V+AV+ L+    +S+    L  L P  KY P    +   +A + +  +
Sbjct  171  ---------LELVKAVQELSS--LLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDL  219

Query  268  AVARVNERLKPEVMEKNTRVDLLSRLMEGKD-SNGNKLGREELTAEALTQLIAGSDTTSN  326
                + ER +     K +  D L  L+  K+  +G+KL  EEL A  L    AG+DTTS+
Sbjct  220  LDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSS  279

Query  327  TTCAILYWCMSTPGVIPKLQKVLDEAIPDDVDVPTHAMVKDIPYLQWVIWETMRIHSTSA  386
            T    LY     P V  KL++ +DE I D    PT+  ++++PYL  VI ET+R+H    
Sbjct  280  TLSWALYELAKHPEVQEKLREEIDEVIGD-KRSPTYDDLQNMPYLDAVIKETLRLHPVVP  338

Query  387  MGLPREIPPGNPPVTISGHTFYPGDVVSVPSYTIHRSKEIWGPDAEKFVPERWDPARLTA  446
            + LPRE+        I G+    G +V V  Y +HR  E++ P+ E+F PER+       
Sbjct  339  LLLPREVTK---DTVIPGYLIPKGTLVIVNLYALHRDPEVF-PNPEEFDPERFLDENGKF  394

Query  447  RQKAAFIPFSTGPRACVGRNVAEMELLVMTGTIFRLFEFEMQQDG---PMETREGFLRKP  503
            R+  AF+PF  GPR C+G  +A ME+ +   T+ + FE E+        ++   G L  P
Sbjct  395  RKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPGTDPPDIDETPGLLLPP  454

Query  504  LGLIVGM  510
                +  
Sbjct  455  KPYKLKF  461



Lambda      K        H        a         alpha
   0.322    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 648020248


Query= TCONS_00018574

Length=850
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429512 pfam07522, DRMBL, DNA repair metallo-beta-lactamase. T...  158     4e-46


>CDD:429512 pfam07522, DRMBL, DNA repair metallo-beta-lactamase.  The metallo-beta-lactamase 
fold contains five sequence motifs. The 
first four motifs are found in pfam00753 and are common to all 
metallo-beta-lactamases. The fifth motif appears to be specific 
to function. This entry represents the fifth motif from 
metallo-beta-lactamases involved in DNA repair.
Length=108

 Score = 158 bits (401),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 54/130 (42%), Positives = 66/130 (51%), Gaps = 22/130 (17%)

Query  690  PELSSLLTDNPAEAQVHMQTLFEIRAETLADYLDSMKPHFSRVVGFRPTGWTYRPPTGRT  749
            PE+ SLLT +P   Q+H+  + ++  E L DYL + K HF  V+  RPTGWTYRPP    
Sbjct  1    PEILSLLTTDPLSTQIHVVPMPKLSYEALLDYLTARKDHFDSVLAIRPTGWTYRPPKTEV  60

Query  750  LDNPPVSTVLHSPQWKTPFSARDLTPQRGSTRESACYGVPYSEHSSFRELTMFCCALRIG  809
             D          P  +   +                YGVPYSEHSSF EL  F   LR  
Sbjct  61   SD-------RIGPSIRGRIT---------------IYGVPYSEHSSFDELKEFVQFLRPK  98

Query  810  RIIPTVNVGS  819
            +IIPTVNVG 
Sbjct  99   KIIPTVNVGG  108



Lambda      K        H        a         alpha
   0.314    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1083813070


Query= TCONS_00012955

Length=91
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426258 pfam01423, LSM, LSM domain. The LSM domain contains Sm...  52.5    2e-11


>CDD:426258 pfam01423, LSM, LSM domain.  The LSM domain contains Sm proteins 
as well as other related LSM (Like Sm) proteins. The U1, 
U2, U4/U6, and U5 small nuclear ribonucleoprotein particles 
(snRNPs) involved in pre-mRNA splicing contain seven Sm proteins 
(B/B', D1, D2, D3, E, F and G) in common, which assemble 
around the Sm site present in four of the major spliceosomal 
small nuclear RNAs. The U6 snRNP binds to the LSM (Like 
Sm) proteins. Sm proteins are also found in archaebacteria, 
which do not have any splicing apparatus suggesting a more general 
role for Sm proteins. All Sm proteins contain a common 
sequence motif in two segments, Sm1 and Sm2, separated by 
a short variable linker. This family also includes the bacterial 
Hfq (host factor Q) proteins. Hfq are also RNA-binding 
proteins, that form hexameric rings.
Length=66

 Score = 52.5 bits (127),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (3%)

Query  5   SFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNMFIRG  64
            F K L  + V +ELKN   +RGTLK  DQ++N+ LDDV+    D    +  +  + IRG
Sbjct  1   KFLKKLLGKRVLVELKNGRELRGTLKGFDQFMNLVLDDVEETIKDG--EVRKLGLVLIRG  58

Query  65  SVVRYVML  72
           + +  +  
Sbjct  59  NNIVLISP  66



Lambda      K        H        a         alpha
   0.323    0.140    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00012956

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00012960

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429512 pfam07522, DRMBL, DNA repair metallo-beta-lactamase. T...  157     3e-47


>CDD:429512 pfam07522, DRMBL, DNA repair metallo-beta-lactamase.  The metallo-beta-lactamase 
fold contains five sequence motifs. The 
first four motifs are found in pfam00753 and are common to all 
metallo-beta-lactamases. The fifth motif appears to be specific 
to function. This entry represents the fifth motif from 
metallo-beta-lactamases involved in DNA repair.
Length=108

 Score = 157 bits (398),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 54/130 (42%), Positives = 66/130 (51%), Gaps = 22/130 (17%)

Query  311  PELSSLLTDNPAEAQVHMQTLFEIRAETLADYLDSMKPHFSRVVGFRPTGWTYRPPTGRT  370
            PE+ SLLT +P   Q+H+  + ++  E L DYL + K HF  V+  RPTGWTYRPP    
Sbjct  1    PEILSLLTTDPLSTQIHVVPMPKLSYEALLDYLTARKDHFDSVLAIRPTGWTYRPPKTEV  60

Query  371  LDNPPVSTVLHSPQWKTPFSARDLTPQRGSTRESACYGVPYSEHSSFRELTMFCCALRIG  430
             D          P  +   +                YGVPYSEHSSF EL  F   LR  
Sbjct  61   SD-------RIGPSIRGRIT---------------IYGVPYSEHSSFDELKEFVQFLRPK  98

Query  431  RIIPTVNVGS  440
            +IIPTVNVG 
Sbjct  99   KIIPTVNVGG  108



Lambda      K        H        a         alpha
   0.319    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00012957

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  176     1e-51


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 176 bits (449),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 85/343 (25%), Positives = 138/343 (40%), Gaps = 33/343 (10%)

Query  37   PSPRFAAFSNLWLLLQ-ARRGRRFLKVDEAHKKYGKLVRIAPKH---VSIADDAAIQAIY  92
            P P          LLQ  R+G       +  KKYG + R+       V ++   A++ + 
Sbjct  2    PGPP--PLPLFGNLLQLGRKGNLHSVFTKLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVL  59

Query  93   GHGNGFLKADFYDAFVSIRRGLFNTRDRA----EHTRK-RKTVSHTFSMKSIGQFEQYIH  147
                        + + +  RG F  +          R+ R+ ++ TF+      FE  + 
Sbjct  60   IKKGEEFSGRPDEPWFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGKLSFEPRVE  119

Query  148  QNVELFVQQWTKLAKLNGNPRSGYATIDALNWFNYLAFDIIGDLAFGAPFGMLEKGKDIA  207
            +     V++  K A   G        ID  +     A ++I  + FG  FG LE  K   
Sbjct  120  EEARDLVEKLRKTAGEPG-------VIDITDLLFRAALNVICSILFGERFGSLEDPKF--  170

Query  208  EMRKTPDSEPTYVQAVEVLNRRGEVSATLGCLPRLIPYAKYLPDRFFKDGVQAVENLAGI  267
                        V+AV+ L+    +S+    L  L P  KY P    +   +A + +  +
Sbjct  171  ---------LELVKAVQELSS--LLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDL  219

Query  268  AVARVNERLKPEVMEKNTRVDLLSRLMEGKD-SNGNKLGREELTAEALTQLIAGSDTTSN  326
                + ER +     K +  D L  L+  K+  +G+KL  EEL A  L    AG+DTTS+
Sbjct  220  LDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSS  279

Query  327  TTCAILYWCMSTPGVIPKLQKVLDEAIPDDVDVPTHAMVKDIP  369
            T    LY     P V  KL++ +DE I  D   PT+  ++++P
Sbjct  280  TLSWALYELAKHPEVQEKLREEIDEVIG-DKRSPTYDDLQNMP  321



Lambda      K        H        a         alpha
   0.321    0.138    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00012958

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  327     9e-108


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 327 bits (840),  Expect = 9e-108, Method: Composition-based stats.
 Identities = 132/487 (27%), Positives = 209/487 (43%), Gaps = 40/487 (8%)

Query  37   PSPRFAAFSNLWLLLQ-ARRGRRFLKVDEAHKKYGKLVRIAPKH---VSIADDAAIQAIY  92
            P P          LLQ  R+G       +  KKYG + R+       V ++   A++ + 
Sbjct  2    PGPP--PLPLFGNLLQLGRKGNLHSVFTKLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVL  59

Query  93   GHGNGFLKADFYDAFVSIRRGLFNTRDRA----EHTRK-RKTVSHTFSMKSIGQFEQYIH  147
                        + + +  RG F  +          R+ R+ ++ TF+      FE  + 
Sbjct  60   IKKGEEFSGRPDEPWFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGKLSFEPRVE  119

Query  148  QNVELFVQQWTKLAKLNGNPRSGYATIDALNWFNYLAFDIIGDLAFGAPFGMLEKGKDIA  207
            +     V++  K A   G        ID  +     A ++I  + FG  FG LE  K   
Sbjct  120  EEARDLVEKLRKTAGEPG-------VIDITDLLFRAALNVICSILFGERFGSLEDPKF--  170

Query  208  EMRKTPDSEPTYVQAVEVLNRRGEVSATLGCLPRLIPYAKYLPDRFFKDGVQAVENLAGI  267
                        V+AV+ L+    +S+    L  L P  KY P    +   +A + +  +
Sbjct  171  ---------LELVKAVQELSS--LLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDL  219

Query  268  AVARVNERLKPEVMEKNTRVDLLSRLMEGKD-SNGNKLGREELTAEALTQLIAGSDTTSN  326
                + ER +     K +  D L  L+  K+  +G+KL  EEL A  L    AG+DTTS+
Sbjct  220  LDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSS  279

Query  327  TTCAILYWCMSTPGVIPKLQKVLDEAIPDDVDVPTHAMVKDIPYLQWVIWETMRIHSTSA  386
            T    LY     P V  KL++ +DE I D    PT+  ++++PYL  VI ET+R+H    
Sbjct  280  TLSWALYELAKHPEVQEKLREEIDEVIGD-KRSPTYDDLQNMPYLDAVIKETLRLHPVVP  338

Query  387  MGLPREIPPGNPPVTISGHTFYPGDVVSVPSYTIHRSKEIWGPDAEKFVPERWDPARLTA  446
            + LPRE+        I G+    G +V V  Y +HR  E++ P+ E+F PER+       
Sbjct  339  LLLPREVTK---DTVIPGYLIPKGTLVIVNLYALHRDPEVF-PNPEEFDPERFLDENGKF  394

Query  447  RQKAAFIPFSTGPRACVGRNVAEMELLVMTGTIFRLFEFEMQQDG---PMETREGFLRKP  503
            R+  AF+PF  GPR C+G  +A ME+ +   T+ + FE E+        ++   G L  P
Sbjct  395  RKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPGTDPPDIDETPGLLLPP  454

Query  504  LGLIVGM  510
                +  
Sbjct  455  KPYKLKF  461



Lambda      K        H        a         alpha
   0.322    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 648020248


Query= TCONS_00012959

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  327     9e-108


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 327 bits (840),  Expect = 9e-108, Method: Composition-based stats.
 Identities = 132/487 (27%), Positives = 209/487 (43%), Gaps = 40/487 (8%)

Query  37   PSPRFAAFSNLWLLLQ-ARRGRRFLKVDEAHKKYGKLVRIAPKH---VSIADDAAIQAIY  92
            P P          LLQ  R+G       +  KKYG + R+       V ++   A++ + 
Sbjct  2    PGPP--PLPLFGNLLQLGRKGNLHSVFTKLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVL  59

Query  93   GHGNGFLKADFYDAFVSIRRGLFNTRDRA----EHTRK-RKTVSHTFSMKSIGQFEQYIH  147
                        + + +  RG F  +          R+ R+ ++ TF+      FE  + 
Sbjct  60   IKKGEEFSGRPDEPWFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGKLSFEPRVE  119

Query  148  QNVELFVQQWTKLAKLNGNPRSGYATIDALNWFNYLAFDIIGDLAFGAPFGMLEKGKDIA  207
            +     V++  K A   G        ID  +     A ++I  + FG  FG LE  K   
Sbjct  120  EEARDLVEKLRKTAGEPG-------VIDITDLLFRAALNVICSILFGERFGSLEDPKF--  170

Query  208  EMRKTPDSEPTYVQAVEVLNRRGEVSATLGCLPRLIPYAKYLPDRFFKDGVQAVENLAGI  267
                        V+AV+ L+    +S+    L  L P  KY P    +   +A + +  +
Sbjct  171  ---------LELVKAVQELSS--LLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDL  219

Query  268  AVARVNERLKPEVMEKNTRVDLLSRLMEGKD-SNGNKLGREELTAEALTQLIAGSDTTSN  326
                + ER +     K +  D L  L+  K+  +G+KL  EEL A  L    AG+DTTS+
Sbjct  220  LDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSS  279

Query  327  TTCAILYWCMSTPGVIPKLQKVLDEAIPDDVDVPTHAMVKDIPYLQWVIWETMRIHSTSA  386
            T    LY     P V  KL++ +DE I D    PT+  ++++PYL  VI ET+R+H    
Sbjct  280  TLSWALYELAKHPEVQEKLREEIDEVIGD-KRSPTYDDLQNMPYLDAVIKETLRLHPVVP  338

Query  387  MGLPREIPPGNPPVTISGHTFYPGDVVSVPSYTIHRSKEIWGPDAEKFVPERWDPARLTA  446
            + LPRE+        I G+    G +V V  Y +HR  E++ P+ E+F PER+       
Sbjct  339  LLLPREVTK---DTVIPGYLIPKGTLVIVNLYALHRDPEVF-PNPEEFDPERFLDENGKF  394

Query  447  RQKAAFIPFSTGPRACVGRNVAEMELLVMTGTIFRLFEFEMQQDG---PMETREGFLRKP  503
            R+  AF+PF  GPR C+G  +A ME+ +   T+ + FE E+        ++   G L  P
Sbjct  395  RKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPGTDPPDIDETPGLLLPP  454

Query  504  LGLIVGM  510
                +  
Sbjct  455  KPYKLKF  461



Lambda      K        H        a         alpha
   0.322    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 648020248


Query= TCONS_00018575

Length=850
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429512 pfam07522, DRMBL, DNA repair metallo-beta-lactamase. T...  158     4e-46


>CDD:429512 pfam07522, DRMBL, DNA repair metallo-beta-lactamase.  The metallo-beta-lactamase 
fold contains five sequence motifs. The 
first four motifs are found in pfam00753 and are common to all 
metallo-beta-lactamases. The fifth motif appears to be specific 
to function. This entry represents the fifth motif from 
metallo-beta-lactamases involved in DNA repair.
Length=108

 Score = 158 bits (401),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 54/130 (42%), Positives = 66/130 (51%), Gaps = 22/130 (17%)

Query  690  PELSSLLTDNPAEAQVHMQTLFEIRAETLADYLDSMKPHFSRVVGFRPTGWTYRPPTGRT  749
            PE+ SLLT +P   Q+H+  + ++  E L DYL + K HF  V+  RPTGWTYRPP    
Sbjct  1    PEILSLLTTDPLSTQIHVVPMPKLSYEALLDYLTARKDHFDSVLAIRPTGWTYRPPKTEV  60

Query  750  LDNPPVSTVLHSPQWKTPFSARDLTPQRGSTRESACYGVPYSEHSSFRELTMFCCALRIG  809
             D          P  +   +                YGVPYSEHSSF EL  F   LR  
Sbjct  61   SD-------RIGPSIRGRIT---------------IYGVPYSEHSSFDELKEFVQFLRPK  98

Query  810  RIIPTVNVGS  819
            +IIPTVNVG 
Sbjct  99   KIIPTVNVGG  108



Lambda      K        H        a         alpha
   0.314    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1083813070


Query= TCONS_00018576

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429512 pfam07522, DRMBL, DNA repair metallo-beta-lactamase. T...  157     1e-46


>CDD:429512 pfam07522, DRMBL, DNA repair metallo-beta-lactamase.  The metallo-beta-lactamase 
fold contains five sequence motifs. The 
first four motifs are found in pfam00753 and are common to all 
metallo-beta-lactamases. The fifth motif appears to be specific 
to function. This entry represents the fifth motif from 
metallo-beta-lactamases involved in DNA repair.
Length=108

 Score = 157 bits (399),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 54/130 (42%), Positives = 66/130 (51%), Gaps = 22/130 (17%)

Query  404  PELSSLLTDNPAEAQVHMQTLFEIRAETLADYLDSMKPHFSRVVGFRPTGWTYRPPTGRT  463
            PE+ SLLT +P   Q+H+  + ++  E L DYL + K HF  V+  RPTGWTYRPP    
Sbjct  1    PEILSLLTTDPLSTQIHVVPMPKLSYEALLDYLTARKDHFDSVLAIRPTGWTYRPPKTEV  60

Query  464  LDNPPVSTVLHSPQWKTPFSARDLTPQRGSTRESACYGVPYSEHSSFRELTMFCCALRIG  523
             D          P  +   +                YGVPYSEHSSF EL  F   LR  
Sbjct  61   SD-------RIGPSIRGRIT---------------IYGVPYSEHSSFDELKEFVQFLRPK  98

Query  524  RIIPTVNVGS  533
            +IIPTVNVG 
Sbjct  99   KIIPTVNVGG  108



Lambda      K        H        a         alpha
   0.318    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 705370016


Query= TCONS_00018578

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  327     9e-108


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 327 bits (840),  Expect = 9e-108, Method: Composition-based stats.
 Identities = 132/487 (27%), Positives = 209/487 (43%), Gaps = 40/487 (8%)

Query  37   PSPRFAAFSNLWLLLQ-ARRGRRFLKVDEAHKKYGKLVRIAPKH---VSIADDAAIQAIY  92
            P P          LLQ  R+G       +  KKYG + R+       V ++   A++ + 
Sbjct  2    PGPP--PLPLFGNLLQLGRKGNLHSVFTKLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVL  59

Query  93   GHGNGFLKADFYDAFVSIRRGLFNTRDRA----EHTRK-RKTVSHTFSMKSIGQFEQYIH  147
                        + + +  RG F  +          R+ R+ ++ TF+      FE  + 
Sbjct  60   IKKGEEFSGRPDEPWFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGKLSFEPRVE  119

Query  148  QNVELFVQQWTKLAKLNGNPRSGYATIDALNWFNYLAFDIIGDLAFGAPFGMLEKGKDIA  207
            +     V++  K A   G        ID  +     A ++I  + FG  FG LE  K   
Sbjct  120  EEARDLVEKLRKTAGEPG-------VIDITDLLFRAALNVICSILFGERFGSLEDPKF--  170

Query  208  EMRKTPDSEPTYVQAVEVLNRRGEVSATLGCLPRLIPYAKYLPDRFFKDGVQAVENLAGI  267
                        V+AV+ L+    +S+    L  L P  KY P    +   +A + +  +
Sbjct  171  ---------LELVKAVQELSS--LLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDL  219

Query  268  AVARVNERLKPEVMEKNTRVDLLSRLMEGKD-SNGNKLGREELTAEALTQLIAGSDTTSN  326
                + ER +     K +  D L  L+  K+  +G+KL  EEL A  L    AG+DTTS+
Sbjct  220  LDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSS  279

Query  327  TTCAILYWCMSTPGVIPKLQKVLDEAIPDDVDVPTHAMVKDIPYLQWVIWETMRIHSTSA  386
            T    LY     P V  KL++ +DE I D    PT+  ++++PYL  VI ET+R+H    
Sbjct  280  TLSWALYELAKHPEVQEKLREEIDEVIGD-KRSPTYDDLQNMPYLDAVIKETLRLHPVVP  338

Query  387  MGLPREIPPGNPPVTISGHTFYPGDVVSVPSYTIHRSKEIWGPDAEKFVPERWDPARLTA  446
            + LPRE+        I G+    G +V V  Y +HR  E++ P+ E+F PER+       
Sbjct  339  LLLPREVTK---DTVIPGYLIPKGTLVIVNLYALHRDPEVF-PNPEEFDPERFLDENGKF  394

Query  447  RQKAAFIPFSTGPRACVGRNVAEMELLVMTGTIFRLFEFEMQQDG---PMETREGFLRKP  503
            R+  AF+PF  GPR C+G  +A ME+ +   T+ + FE E+        ++   G L  P
Sbjct  395  RKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPGTDPPDIDETPGLLLPP  454

Query  504  LGLIVGM  510
                +  
Sbjct  455  KPYKLKF  461



Lambda      K        H        a         alpha
   0.322    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 648020248


Query= TCONS_00018579

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  293     2e-96


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 293 bits (752),  Expect = 2e-96, Method: Composition-based stats.
 Identities = 111/373 (30%), Positives = 170/373 (46%), Gaps = 29/373 (8%)

Query  7    FEQYIHQNVELFVQQWTKLAKLNGNPRSGYATIDALNWFNYLAFDIIGDLAFGAPFGMLE  66
            FE  + +     V++  K A   G        ID  +     A ++I  + FG  FG LE
Sbjct  114  FEPRVEEEARDLVEKLRKTAGEPG-------VIDITDLLFRAALNVICSILFGERFGSLE  166

Query  67   KGKDIAEMRKTPDSEPTYVQAVEVLNRRGEVSATLGCLPRLIPYAKYLPDRFFKDGVQAV  126
              K               V+AV+ L+    +S+    L  L P  KY P    +   +A 
Sbjct  167  DPKF-----------LELVKAVQELSS--LLSSPSPQLLDLFPILKYFPGPHGRKLKRAR  213

Query  127  ENLAGIAVARVNERLKPEVMEKNTRVDLLSRLMEGKD-SNGNKLGREELTAEALTQLIAG  185
            + +  +    + ER +     K +  D L  L+  K+  +G+KL  EEL A  L    AG
Sbjct  214  KKIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAG  273

Query  186  SDTTSNTTCAILYWCMSTPGVIPKLQKVLDEAIPDDVDVPTHAMVKDIPYLQWVIWETMR  245
            +DTTS+T    LY     P V  KL++ +DE I D    PT+  ++++PYL  VI ET+R
Sbjct  274  TDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGD-KRSPTYDDLQNMPYLDAVIKETLR  332

Query  246  IHSTSAMGLPREIPPGNPPVTISGHTFYPGDVVSVPSYTIHRSKEIWGPDAEKFVPERWD  305
            +H    + LPRE+        I G+    G +V V  Y +HR  E++ P+ E+F PER+ 
Sbjct  333  LHPVVPLLLPREVTK---DTVIPGYLIPKGTLVIVNLYALHRDPEVF-PNPEEFDPERFL  388

Query  306  PARLTARQKAAFIPFSTGPRACVGRNVAEMELLVMTGTIFRLFEFEMQQDG---PMETRE  362
                  R+  AF+PF  GPR C+G  +A ME+ +   T+ + FE E+        ++   
Sbjct  389  DENGKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPGTDPPDIDETP  448

Query  363  GFLRKPLGLIVGM  375
            G L  P    +  
Sbjct  449  GLLLPPKPYKLKF  461



Lambda      K        H        a         alpha
   0.320    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00012961

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  176     1e-51


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 176 bits (449),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 85/343 (25%), Positives = 138/343 (40%), Gaps = 33/343 (10%)

Query  37   PSPRFAAFSNLWLLLQ-ARRGRRFLKVDEAHKKYGKLVRIAPKH---VSIADDAAIQAIY  92
            P P          LLQ  R+G       +  KKYG + R+       V ++   A++ + 
Sbjct  2    PGPP--PLPLFGNLLQLGRKGNLHSVFTKLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVL  59

Query  93   GHGNGFLKADFYDAFVSIRRGLFNTRDRA----EHTRK-RKTVSHTFSMKSIGQFEQYIH  147
                        + + +  RG F  +          R+ R+ ++ TF+      FE  + 
Sbjct  60   IKKGEEFSGRPDEPWFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGKLSFEPRVE  119

Query  148  QNVELFVQQWTKLAKLNGNPRSGYATIDALNWFNYLAFDIIGDLAFGAPFGMLEKGKDIA  207
            +     V++  K A   G        ID  +     A ++I  + FG  FG LE  K   
Sbjct  120  EEARDLVEKLRKTAGEPG-------VIDITDLLFRAALNVICSILFGERFGSLEDPKF--  170

Query  208  EMRKTPDSEPTYVQAVEVLNRRGEVSATLGCLPRLIPYAKYLPDRFFKDGVQAVENLAGI  267
                        V+AV+ L+    +S+    L  L P  KY P    +   +A + +  +
Sbjct  171  ---------LELVKAVQELSS--LLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDL  219

Query  268  AVARVNERLKPEVMEKNTRVDLLSRLMEGKD-SNGNKLGREELTAEALTQLIAGSDTTSN  326
                + ER +     K +  D L  L+  K+  +G+KL  EEL A  L    AG+DTTS+
Sbjct  220  LDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSS  279

Query  327  TTCAILYWCMSTPGVIPKLQKVLDEAIPDDVDVPTHAMVKDIP  369
            T    LY     P V  KL++ +DE I  D   PT+  ++++P
Sbjct  280  TLSWALYELAKHPEVQEKLREEIDEVIG-DKRSPTYDDLQNMP  321



Lambda      K        H        a         alpha
   0.321    0.138    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00012962

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  327     9e-108


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 327 bits (840),  Expect = 9e-108, Method: Composition-based stats.
 Identities = 132/487 (27%), Positives = 209/487 (43%), Gaps = 40/487 (8%)

Query  37   PSPRFAAFSNLWLLLQ-ARRGRRFLKVDEAHKKYGKLVRIAPKH---VSIADDAAIQAIY  92
            P P          LLQ  R+G       +  KKYG + R+       V ++   A++ + 
Sbjct  2    PGPP--PLPLFGNLLQLGRKGNLHSVFTKLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVL  59

Query  93   GHGNGFLKADFYDAFVSIRRGLFNTRDRA----EHTRK-RKTVSHTFSMKSIGQFEQYIH  147
                        + + +  RG F  +          R+ R+ ++ TF+      FE  + 
Sbjct  60   IKKGEEFSGRPDEPWFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGKLSFEPRVE  119

Query  148  QNVELFVQQWTKLAKLNGNPRSGYATIDALNWFNYLAFDIIGDLAFGAPFGMLEKGKDIA  207
            +     V++  K A   G        ID  +     A ++I  + FG  FG LE  K   
Sbjct  120  EEARDLVEKLRKTAGEPG-------VIDITDLLFRAALNVICSILFGERFGSLEDPKF--  170

Query  208  EMRKTPDSEPTYVQAVEVLNRRGEVSATLGCLPRLIPYAKYLPDRFFKDGVQAVENLAGI  267
                        V+AV+ L+    +S+    L  L P  KY P    +   +A + +  +
Sbjct  171  ---------LELVKAVQELSS--LLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDL  219

Query  268  AVARVNERLKPEVMEKNTRVDLLSRLMEGKD-SNGNKLGREELTAEALTQLIAGSDTTSN  326
                + ER +     K +  D L  L+  K+  +G+KL  EEL A  L    AG+DTTS+
Sbjct  220  LDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSS  279

Query  327  TTCAILYWCMSTPGVIPKLQKVLDEAIPDDVDVPTHAMVKDIPYLQWVIWETMRIHSTSA  386
            T    LY     P V  KL++ +DE I D    PT+  ++++PYL  VI ET+R+H    
Sbjct  280  TLSWALYELAKHPEVQEKLREEIDEVIGD-KRSPTYDDLQNMPYLDAVIKETLRLHPVVP  338

Query  387  MGLPREIPPGNPPVTISGHTFYPGDVVSVPSYTIHRSKEIWGPDAEKFVPERWDPARLTA  446
            + LPRE+        I G+    G +V V  Y +HR  E++ P+ E+F PER+       
Sbjct  339  LLLPREVTK---DTVIPGYLIPKGTLVIVNLYALHRDPEVF-PNPEEFDPERFLDENGKF  394

Query  447  RQKAAFIPFSTGPRACVGRNVAEMELLVMTGTIFRLFEFEMQQDG---PMETREGFLRKP  503
            R+  AF+PF  GPR C+G  +A ME+ +   T+ + FE E+        ++   G L  P
Sbjct  395  RKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPGTDPPDIDETPGLLLPP  454

Query  504  LGLIVGM  510
                +  
Sbjct  455  KPYKLKF  461



Lambda      K        H        a         alpha
   0.322    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 648020248


Query= TCONS_00012963

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367370 pfam03169, OPT, OPT oligopeptide transporter protein. ...  405     2e-135


>CDD:367370 pfam03169, OPT, OPT oligopeptide transporter protein.  The OPT 
family of oligopeptide transporters is distinct from the ABC 
pfam00005 and PTR pfam00854 transporter families. OPT transporters 
were first recognized in fungi (Candida albicans and 
Schizosaccharomyces pombe), but this alignment also includes 
orthologues from Arabidopsis thaliana. OPT transporters 
are thought to have 12-14 transmembrane domains and contain 
the following motif: SPYxEVRxxVxxxDDP.
Length=614

 Score = 405 bits (1044),  Expect = 2e-135, Method: Composition-based stats.
 Identities = 181/485 (37%), Positives = 257/485 (53%), Gaps = 41/485 (8%)

Query  93   NTIRAWTIGLVFATLGSALNMLFSMRQPYIVIPSYVIQVIAYPVGVAWYKVMPNKQFKFF  152
             T RA  +G++   LGSA+NM F +R   + I S    ++A+P+G AW +++P   F   
Sbjct  2    LTFRAVVLGILLGVLGSAVNMYFGLRTGLVSISSIPAALLAFPLGKAWARILPKWGF---  58

Query  153  GIDCNLNPGPFSKKEHALIVIMSNATFAGGAAYATDVLLAQRAF--YKQRFSWAFELLLC  210
                  NPGPF+ KE+ +I  M++A      AYAT  +    A   Y Q   + + +LL 
Sbjct  59   ------NPGPFTIKENVIIQTMASA--GATIAYATGFIFTLPALVMYGQWPGFGYAILLS  110

Query  211  ISTQTLGFGLAGFFHRFLVTPAAMIWPSTLINSALFNALHDRSKPDPQKVSGWTIGKYRL  270
            +STQ LG G AG   RFLV PA + +PS L  + L  ALH                + + 
Sbjct  111  LSTQLLGVGFAGPLRRFLVYPAKLPFPSGLATAELLKALHTPGGD--------EKSRLKF  162

Query  271  FLYCMIGSFVWYWFPGYIAPFLSTFAFITWIKPQSPIVNQLFGGWTGLSLIPITFDWTQI  330
            F    +GSFVW WFP YI P LS F+++ WI P     NQLFGG  GL L+P+TFDW  I
Sbjct  163  FFIVFLGSFVWGWFPLYIFPALSGFSWLCWIFPN----NQLFGGTFGLGLLPLTFDWNFI  218

Query  331  SGFNFSPLISPWHAHMNTLIGMVIFFWITTMGLHYSGMWYGKYLPISDSNSYDNTAQRYQ  390
            + +    LI P    +N LIG V+ + I    L+YS +WY  YLPI+ +           
Sbjct  219  ASYIGVGLIVPLWVAVNMLIGAVLSWGILIPILYYSNVWYPAYLPINST-----------  267

Query  391  VSKILTPNYEFDQAKYEQYSPLFLSTTFALNYGLSFATIIAVLIHTGLFHGKELWARFRK  450
              +IL  +   D  KY  Y P+ LS  +AL YG  FA   A+++HT LFHGK++ A  R 
Sbjct  268  --RILDSDGLLDYKKYIGYGPMLLSGLYALLYGTFFAAYTAIIVHTILFHGKDIAAALRS  325

Query  451  FG-EEEEDVHARLMSRFKTVPLWWYAVLSLVMIGMGLGVVLGYPTHLSWWAFFVSLIIAA  509
            F     +D H RLM ++K VP+WWY  L ++   +G+ VV  + T L  W   ++L++A 
Sbjct  326  FPRTSYDDRHRRLMRKYKEVPMWWYLALLVLSFVIGIAVVPAWFTQLPVWGLLLALLLAF  385

Query  510  VWFVPIGLVQATTNI--QIGLNVITEFIIGYMQPGRPMAMMLFKTFGYITMSQGLYFCQD  567
            V+ +P   +   T I    G+ ++TE I G   PGRP+A ++F   GY   +Q   F QD
Sbjct  386  VFAIPSAYIYGLTGINPVSGMGILTELIFGAWLPGRPVANLIFGGVGYNAAAQAGDFMQD  445

Query  568  MKLGM  572
            +K G 
Sbjct  446  LKTGH  450



Lambda      K        H        a         alpha
   0.325    0.139    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 732269720


Query= TCONS_00012964

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367370 pfam03169, OPT, OPT oligopeptide transporter protein. ...  405     2e-135


>CDD:367370 pfam03169, OPT, OPT oligopeptide transporter protein.  The OPT 
family of oligopeptide transporters is distinct from the ABC 
pfam00005 and PTR pfam00854 transporter families. OPT transporters 
were first recognized in fungi (Candida albicans and 
Schizosaccharomyces pombe), but this alignment also includes 
orthologues from Arabidopsis thaliana. OPT transporters 
are thought to have 12-14 transmembrane domains and contain 
the following motif: SPYxEVRxxVxxxDDP.
Length=614

 Score = 405 bits (1044),  Expect = 2e-135, Method: Composition-based stats.
 Identities = 181/485 (37%), Positives = 257/485 (53%), Gaps = 41/485 (8%)

Query  93   NTIRAWTIGLVFATLGSALNMLFSMRQPYIVIPSYVIQVIAYPVGVAWYKVMPNKQFKFF  152
             T RA  +G++   LGSA+NM F +R   + I S    ++A+P+G AW +++P   F   
Sbjct  2    LTFRAVVLGILLGVLGSAVNMYFGLRTGLVSISSIPAALLAFPLGKAWARILPKWGF---  58

Query  153  GIDCNLNPGPFSKKEHALIVIMSNATFAGGAAYATDVLLAQRAF--YKQRFSWAFELLLC  210
                  NPGPF+ KE+ +I  M++A      AYAT  +    A   Y Q   + + +LL 
Sbjct  59   ------NPGPFTIKENVIIQTMASA--GATIAYATGFIFTLPALVMYGQWPGFGYAILLS  110

Query  211  ISTQTLGFGLAGFFHRFLVTPAAMIWPSTLINSALFNALHDRSKPDPQKVSGWTIGKYRL  270
            +STQ LG G AG   RFLV PA + +PS L  + L  ALH                + + 
Sbjct  111  LSTQLLGVGFAGPLRRFLVYPAKLPFPSGLATAELLKALHTPGGD--------EKSRLKF  162

Query  271  FLYCMIGSFVWYWFPGYIAPFLSTFAFITWIKPQSPIVNQLFGGWTGLSLIPITFDWTQI  330
            F    +GSFVW WFP YI P LS F+++ WI P     NQLFGG  GL L+P+TFDW  I
Sbjct  163  FFIVFLGSFVWGWFPLYIFPALSGFSWLCWIFPN----NQLFGGTFGLGLLPLTFDWNFI  218

Query  331  SGFNFSPLISPWHAHMNTLIGMVIFFWITTMGLHYSGMWYGKYLPISDSNSYDNTAQRYQ  390
            + +    LI P    +N LIG V+ + I    L+YS +WY  YLPI+ +           
Sbjct  219  ASYIGVGLIVPLWVAVNMLIGAVLSWGILIPILYYSNVWYPAYLPINST-----------  267

Query  391  VSKILTPNYEFDQAKYEQYSPLFLSTTFALNYGLSFATIIAVLIHTGLFHGKELWARFRK  450
              +IL  +   D  KY  Y P+ LS  +AL YG  FA   A+++HT LFHGK++ A  R 
Sbjct  268  --RILDSDGLLDYKKYIGYGPMLLSGLYALLYGTFFAAYTAIIVHTILFHGKDIAAALRS  325

Query  451  FG-EEEEDVHARLMSRFKTVPLWWYAVLSLVMIGMGLGVVLGYPTHLSWWAFFVSLIIAA  509
            F     +D H RLM ++K VP+WWY  L ++   +G+ VV  + T L  W   ++L++A 
Sbjct  326  FPRTSYDDRHRRLMRKYKEVPMWWYLALLVLSFVIGIAVVPAWFTQLPVWGLLLALLLAF  385

Query  510  VWFVPIGLVQATTNI--QIGLNVITEFIIGYMQPGRPMAMMLFKTFGYITMSQGLYFCQD  567
            V+ +P   +   T I    G+ ++TE I G   PGRP+A ++F   GY   +Q   F QD
Sbjct  386  VFAIPSAYIYGLTGINPVSGMGILTELIFGAWLPGRPVANLIFGGVGYNAAAQAGDFMQD  445

Query  568  MKLGM  572
            +K G 
Sbjct  446  LKTGH  450



Lambda      K        H        a         alpha
   0.325    0.139    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 732269720


Query= TCONS_00012965

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367370 pfam03169, OPT, OPT oligopeptide transporter protein. ...  405     2e-135


>CDD:367370 pfam03169, OPT, OPT oligopeptide transporter protein.  The OPT 
family of oligopeptide transporters is distinct from the ABC 
pfam00005 and PTR pfam00854 transporter families. OPT transporters 
were first recognized in fungi (Candida albicans and 
Schizosaccharomyces pombe), but this alignment also includes 
orthologues from Arabidopsis thaliana. OPT transporters 
are thought to have 12-14 transmembrane domains and contain 
the following motif: SPYxEVRxxVxxxDDP.
Length=614

 Score = 405 bits (1044),  Expect = 2e-135, Method: Composition-based stats.
 Identities = 181/485 (37%), Positives = 257/485 (53%), Gaps = 41/485 (8%)

Query  93   NTIRAWTIGLVFATLGSALNMLFSMRQPYIVIPSYVIQVIAYPVGVAWYKVMPNKQFKFF  152
             T RA  +G++   LGSA+NM F +R   + I S    ++A+P+G AW +++P   F   
Sbjct  2    LTFRAVVLGILLGVLGSAVNMYFGLRTGLVSISSIPAALLAFPLGKAWARILPKWGF---  58

Query  153  GIDCNLNPGPFSKKEHALIVIMSNATFAGGAAYATDVLLAQRAF--YKQRFSWAFELLLC  210
                  NPGPF+ KE+ +I  M++A      AYAT  +    A   Y Q   + + +LL 
Sbjct  59   ------NPGPFTIKENVIIQTMASA--GATIAYATGFIFTLPALVMYGQWPGFGYAILLS  110

Query  211  ISTQTLGFGLAGFFHRFLVTPAAMIWPSTLINSALFNALHDRSKPDPQKVSGWTIGKYRL  270
            +STQ LG G AG   RFLV PA + +PS L  + L  ALH                + + 
Sbjct  111  LSTQLLGVGFAGPLRRFLVYPAKLPFPSGLATAELLKALHTPGGD--------EKSRLKF  162

Query  271  FLYCMIGSFVWYWFPGYIAPFLSTFAFITWIKPQSPIVNQLFGGWTGLSLIPITFDWTQI  330
            F    +GSFVW WFP YI P LS F+++ WI P     NQLFGG  GL L+P+TFDW  I
Sbjct  163  FFIVFLGSFVWGWFPLYIFPALSGFSWLCWIFPN----NQLFGGTFGLGLLPLTFDWNFI  218

Query  331  SGFNFSPLISPWHAHMNTLIGMVIFFWITTMGLHYSGMWYGKYLPISDSNSYDNTAQRYQ  390
            + +    LI P    +N LIG V+ + I    L+YS +WY  YLPI+ +           
Sbjct  219  ASYIGVGLIVPLWVAVNMLIGAVLSWGILIPILYYSNVWYPAYLPINST-----------  267

Query  391  VSKILTPNYEFDQAKYEQYSPLFLSTTFALNYGLSFATIIAVLIHTGLFHGKELWARFRK  450
              +IL  +   D  KY  Y P+ LS  +AL YG  FA   A+++HT LFHGK++ A  R 
Sbjct  268  --RILDSDGLLDYKKYIGYGPMLLSGLYALLYGTFFAAYTAIIVHTILFHGKDIAAALRS  325

Query  451  FG-EEEEDVHARLMSRFKTVPLWWYAVLSLVMIGMGLGVVLGYPTHLSWWAFFVSLIIAA  509
            F     +D H RLM ++K VP+WWY  L ++   +G+ VV  + T L  W   ++L++A 
Sbjct  326  FPRTSYDDRHRRLMRKYKEVPMWWYLALLVLSFVIGIAVVPAWFTQLPVWGLLLALLLAF  385

Query  510  VWFVPIGLVQATTNI--QIGLNVITEFIIGYMQPGRPMAMMLFKTFGYITMSQGLYFCQD  567
            V+ +P   +   T I    G+ ++TE I G   PGRP+A ++F   GY   +Q   F QD
Sbjct  386  VFAIPSAYIYGLTGINPVSGMGILTELIFGAWLPGRPVANLIFGGVGYNAAAQAGDFMQD  445

Query  568  MKLGM  572
            +K G 
Sbjct  446  LKTGH  450



Lambda      K        H        a         alpha
   0.325    0.139    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 732269720


Query= TCONS_00012970

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00012969

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0736    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00018582

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00018583

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00012971

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00012968

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00012967

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00012966

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00018584

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00018585

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00012972

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00012973

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00018586

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00012974

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.126    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00012975

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00012976

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00012977

Length=229


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00012978

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00018587

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00012979

Length=296


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00018588

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease. This f...  82.8    5e-19


>CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease.  This family 
of proteins are related to pfam00665 and are probably endonucleases 
of the DDE superfamily. Transposase proteins are necessary 
for efficient DNA transposition. This domain is a member 
of the DDE superfamily, which contain three carboxylate 
residues that are believed to be responsible for coordinating 
metal ions needed for catalysis. The catalytic activity of 
this enzyme involves DNA cleavage at a specific site followed 
by a strand transfer reaction. Interestingly this family 
also includes the CENP-B protein. This domain in that protein 
appears to have lost the metal binding residues and is unlikely 
to have endonuclease activity. Centromere Protein B (CENP-B) 
is a DNA-binding protein localized to the centromere.
Length=177

 Score = 82.8 bits (205),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 41/179 (23%), Positives = 68/179 (38%), Gaps = 17/179 (9%)

Query  202  TTIECIAADGWQMDPWFIFKGKGIFMECWFNESEALPPNTTIATQANGWISDELAHQW-P  260
              + C AA   ++ P  I KGK      + NE    P      +    W++  +  +W  
Sbjct  6    VMLCCNAAGSEKLPPLVIGKGKNP--RAFKNEKTPKPLPVEYKSNGKAWMTTSIFEEWLQ  63

Query  261  QSFIKATNERTKRGEKRILIFDGHGSHLTVDFLQTCEDNGVIPFGFLPHTTHLCQPLDGK  320
            + F      R   G K +L+ DG GSH TV+ +++C    +       ++T + QPLD  
Sbjct  64   KWFDPRM--RESPGRKVLLLLDGSGSHPTVELIRSCGLQNIFLVFLPANSTSILQPLDQG  121

Query  321  PFLSYKQHFRR---------INNELSYWAGEPVGKSEFLRVIGPVREKAFNQRIIREAF  370
               ++K ++RR          N     W    +     L+ I      A +   I   F
Sbjct  122  VVSTFKANYRRQWLQYLLAGNNLLSPPWKKLTLLD--ALKWI-AKAWNAVSPSTITSGF  177



Lambda      K        H        a         alpha
   0.319    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599678264


Query= TCONS_00012980

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00012981

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428146 pfam04828, GFA, Glutathione-dependent formaldehyde-act...  110     2e-33


>CDD:428146 pfam04828, GFA, Glutathione-dependent formaldehyde-activating 
enzyme.  The GFA enzyme catalyzes the first step in the detoxification 
of formaldehyde. This domain has a beta-tent fold.
Length=93

 Score = 110 bits (277),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 42/92 (46%), Positives = 58/92 (63%), Gaps = 3/92 (3%)

Query  28   HCDDCQRQTGSTYSLVAVVPKDKLK-INGPIKSFAKNGSSGKAVHRMFCSECGSPIAHDP  86
            HC DCQR++GS ++  AVVPK+ L+  +G +K +   G SG  V R FC  CG+P+  + 
Sbjct  4    HCRDCQRRSGSAFAANAVVPKEALRLTSGELKEYTDTGDSGNTVTRYFCPNCGTPLYSES  63

Query  87   DAAPEIIAIKAGTLDIEIKKNLKPDTEIWTVS  118
             AAP +I ++ GTLD   +  LKP  EIWT S
Sbjct  64   TAAPGVIIVRVGTLDDPDQ--LKPVAEIWTKS  93



Lambda      K        H        a         alpha
   0.319    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00012982

Length=64
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428146 pfam04828, GFA, Glutathione-dependent formaldehyde-act...  56.6    3e-13


>CDD:428146 pfam04828, GFA, Glutathione-dependent formaldehyde-activating 
enzyme.  The GFA enzyme catalyzes the first step in the detoxification 
of formaldehyde. This domain has a beta-tent fold.
Length=93

 Score = 56.6 bits (137),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 21/46 (46%), Positives = 28/46 (61%), Gaps = 2/46 (4%)

Query  1   MFCSECGSPIAHDPDAAPEIIAIKAGTLDIEIKKNLKPDTEIWTVS  46
            FC  CG+P+  +  AAP +I ++ GTLD   +  LKP  EIWT S
Sbjct  50  YFCPNCGTPLYSESTAAPGVIIVRVGTLDDPDQ--LKPVAEIWTKS  93



Lambda      K        H        a         alpha
   0.319    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00012983

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428146 pfam04828, GFA, Glutathione-dependent formaldehyde-act...  110     2e-33


>CDD:428146 pfam04828, GFA, Glutathione-dependent formaldehyde-activating 
enzyme.  The GFA enzyme catalyzes the first step in the detoxification 
of formaldehyde. This domain has a beta-tent fold.
Length=93

 Score = 110 bits (278),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 42/92 (46%), Positives = 58/92 (63%), Gaps = 3/92 (3%)

Query  28   HCDDCQRQTGSTYSLVAVVPKDKLK-INGPIKSFAKNGSSGKAVHRMFCSECGSPIAHDP  86
            HC DCQR++GS ++  AVVPK+ L+  +G +K +   G SG  V R FC  CG+P+  + 
Sbjct  4    HCRDCQRRSGSAFAANAVVPKEALRLTSGELKEYTDTGDSGNTVTRYFCPNCGTPLYSES  63

Query  87   DAAPEIIAIKAGTLDIEIKKNLKPDTEIWTVS  118
             AAP +I ++ GTLD   +  LKP  EIWT S
Sbjct  64   TAAPGVIIVRVGTLDDPDQ--LKPVAEIWTKS  93



Lambda      K        H        a         alpha
   0.319    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00018589

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal ...  98.0    5e-25


>CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal domain. 
 This is the long, C-terminal part of the enzyme.
Length=357

 Score = 98.0 bits (245),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 72/137 (53%), Gaps = 10/137 (7%)

Query  57   GLQNTTVVETEISFSDHWKRLLLYRGYTLEQLWD-SDFEDMLHLLVWGSYPTALQKKELS  115
            GL+     ETEIS+ D  K +L YRGY +E+L + S FE++ +LL+ G  PT  + +E S
Sbjct  1    GLRGVAAGETEISYIDGEKGILRYRGYDIEELAERSSFEEVAYLLLTGELPTKEELEEFS  60

Query  116  RKLSEEMTMVPKSVHRTIETLPRTTSPLPLMLVGLSACLAYVPESIPASTKPDLYQSNSN  175
             +L+     +P+ V   +  LPR   P+ ++   +SA  A+ PE+I      D      N
Sbjct  61   AELAAHR-ELPEDVLELLRALPRDAHPMAVLRAAVSALAAFDPEAI-----SDKADYWEN  114

Query  176  VLDRAII---RTVAAYA  189
             L   +I    T+AAY 
Sbjct  115  ALRDDLIAKLPTIAAYI  131



Lambda      K        H        a         alpha
   0.320    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00018590

Length=111
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428146 pfam04828, GFA, Glutathione-dependent formaldehyde-act...  101     4e-30


>CDD:428146 pfam04828, GFA, Glutathione-dependent formaldehyde-activating 
enzyme.  The GFA enzyme catalyzes the first step in the detoxification 
of formaldehyde. This domain has a beta-tent fold.
Length=93

 Score = 101 bits (253),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query  28   HCDDCQRQTGSTYSLVAVVPKDKLK-INGPIKSFAKNGSSGKAVHRMFCSECGSPIAHDP  86
            HC DCQR++GS ++  AVVPK+ L+  +G +K +   G SG  V R FC  CG+P+  + 
Sbjct  4    HCRDCQRRSGSAFAANAVVPKEALRLTSGELKEYTDTGDSGNTVTRYFCPNCGTPLYSES  63

Query  87   DAAPEIIAIKAGTLD  101
             AAP +I ++ GTLD
Sbjct  64   TAAPGVIIVRVGTLD  78



Lambda      K        H        a         alpha
   0.319    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00012984

Length=112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428146 pfam04828, GFA, Glutathione-dependent formaldehyde-act...  94.3    3e-27


>CDD:428146 pfam04828, GFA, Glutathione-dependent formaldehyde-activating 
enzyme.  The GFA enzyme catalyzes the first step in the detoxification 
of formaldehyde. This domain has a beta-tent fold.
Length=93

 Score = 94.3 bits (235),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 52/90 (58%), Gaps = 11/90 (12%)

Query  28   HCDDCQRQTGSTYSLVAVVPKDKLK-INGPIKSFAKNGSSGKAVHRMFCSECGSPIAHDP  86
            HC DCQR++GS ++  AVVPK+ L+  +G +K +   G SG  V R FC  CG+P+  + 
Sbjct  4    HCRDCQRRSGSAFAANAVVPKEALRLTSGELKEYTDTGDSGNTVTRYFCPNCGTPLYSES  63

Query  87   DAAPE--IIKN--------LKPDTEIWTVS  106
             AAP   I++         LKP  EIWT S
Sbjct  64   TAAPGVIIVRVGTLDDPDQLKPVAEIWTKS  93



Lambda      K        H        a         alpha
   0.319    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00012985

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal ...  213     5e-68


>CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal domain. 
 This is the long, C-terminal part of the enzyme.
Length=357

 Score = 213 bits (546),  Expect = 5e-68, Method: Composition-based stats.
 Identities = 91/249 (37%), Positives = 129/249 (52%), Gaps = 17/249 (7%)

Query  35   AIIRTVAAYAVVFGLVNCHRRGIPFAQPSRHTSYLENLFHLAGLVDQTTGR-PDPTKLSC  93
            A + T+AAY         HRRG+P   P    SY EN  ++        G  PDP +   
Sbjct  122  AKLPTIAAYI------YRHRRGLPPIYPDPDLSYAENFLYM------LFGYEPDPEEARA  169

Query  94   FQRFAMLNADHGMALSVFSALVTASSLTDPISCLITATGAAFGPLHFGATESANLALRVI  153
               + +L+ADH    S F+A V AS+L DP S +  A GA  GPLH GA E+    L  I
Sbjct  170  LDLYLILHADHEGNASTFTARVVASTLADPYSAIAAAIGALKGPLHGGANEAVLEMLEEI  229

Query  154  GTPENVPNFIEEVKQ-GKQRLFGYGHRSYKGVDPRVAPIRSILKDL--DMSSNSLLKVAE  210
            G+P+ V  +I +V   GK+R+ G+GHR YK  DPR   ++   ++L  +   + LL++AE
Sbjct  230  GSPDEVEEYIRKVLNKGKERIMGFGHRVYKNYDPRAKILKEFAEELAEEGGDDPLLELAE  289

Query  211  RIEQVASADDYFRNRGLYPNADFYGNFVFTEIGFEPDMIPAAMMAQRIMGVMAHWREYMC  270
             +E+VA  D YF  + LYPN DFY   ++  +G   DM        R  G +AHW E + 
Sbjct  290  ELEEVAPEDLYFVEKNLYPNVDFYSGVLYHALGIPTDMFTPLFAISRTAGWLAHWIEQL-  348

Query  271  KPCKLFRPS  279
               ++ RP 
Sbjct  349  ADNRIIRPR  357



Lambda      K        H        a         alpha
   0.322    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00012987

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal ...  218     6e-70


>CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal domain. 
 This is the long, C-terminal part of the enzyme.
Length=357

 Score = 218 bits (558),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 103/297 (35%), Positives = 152/297 (51%), Gaps = 25/297 (8%)

Query  3    HLLVWGSYPTALQKKELSRKLSEEMTMVPKSVHRTIETLPRTTSPLPLMLVGLSACLAYV  62
            +LL+ G  PT  + +E S +L+     +P+ V   +  LPR   P+ ++   +SA  A+ 
Sbjct  43   YLLLTGELPTKEELEEFSAELAAHR-ELPEDVLELLRALPRDAHPMAVLRAAVSALAAFD  101

Query  63   PESIPASTKPDLYQSNSNVLDRAII---RTVAAYAVVFGLVNCHRRGIPFAQPSRHTSYL  119
            PE+I      D      N L   +I    T+AAY         HRRG+P   P    SY 
Sbjct  102  PEAIS-----DKADYWENALRDDLIAKLPTIAAYI------YRHRRGLPPIYPDPDLSYA  150

Query  120  ENLFHLAGLVDQTTGR-PDPTKLSCFQRFAMLNADHGMALSVFSALVTASSLTDPISCLI  178
            EN  ++        G  PDP +      + +L+ADH    S F+A V AS+L DP S + 
Sbjct  151  ENFLYM------LFGYEPDPEEARALDLYLILHADHEGNASTFTARVVASTLADPYSAIA  204

Query  179  TATGAAFGPLHFGATESANLALRVIGTPENVPNFIEEVKQ-GKQRLFGYGHRSYKGVDPR  237
             A GA  GPLH GA E+    L  IG+P+ V  +I +V   GK+R+ G+GHR YK  DPR
Sbjct  205  AAIGALKGPLHGGANEAVLEMLEEIGSPDEVEEYIRKVLNKGKERIMGFGHRVYKNYDPR  264

Query  238  VAPIRSILKDL--DMSSNSLLKVAERIEQVASADDYFRNRGLYPNADFYGNFVFTEM  292
               ++   ++L  +   + LL++AE +E+VA  D YF  + LYPN DFY   ++  +
Sbjct  265  AKILKEFAEELAEEGGDDPLLELAEELEEVAPEDLYFVEKNLYPNVDFYSGVLYHAL  321



Lambda      K        H        a         alpha
   0.321    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00012986

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal ...  297     1e-98


>CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal domain. 
 This is the long, C-terminal part of the enzyme.
Length=357

 Score = 297 bits (763),  Expect = 1e-98, Method: Composition-based stats.
 Identities = 134/376 (36%), Positives = 194/376 (52%), Gaps = 27/376 (7%)

Query  57   GLQNTTVVETEISFSDHWKRLLLYRGYTLEQLWD-SDFEDMLHLLVWGSYPTALQKKELS  115
            GL+     ETEIS+ D  K +L YRGY +E+L + S FE++ +LL+ G  PT  + +E S
Sbjct  1    GLRGVAAGETEISYIDGEKGILRYRGYDIEELAERSSFEEVAYLLLTGELPTKEELEEFS  60

Query  116  RKLSEEMTMVPKSVHRTIETLPRTTSPLPLMLVGLSACLAYVPESIPASTKPDLYQSNSN  175
             +L+     +P+ V   +  LPR   P+ ++   +SA  A+ PE+I      D      N
Sbjct  61   AELAAHR-ELPEDVLELLRALPRDAHPMAVLRAAVSALAAFDPEAIS-----DKADYWEN  114

Query  176  VLDRAII---RTVAAYAVVFGLVNCHRRGIPFAQPSRHTSYLENLFHLAGLVDQTTGR-P  231
             L   +I    T+AAY         HRRG+P   P    SY EN  ++        G  P
Sbjct  115  ALRDDLIAKLPTIAAYI------YRHRRGLPPIYPDPDLSYAENFLYM------LFGYEP  162

Query  232  DPTKLSCFQRFAMLNADHGMALSVFSALVTASSLTDPISCLITATGAAFGPLHFGATESA  291
            DP +      + +L+ADH    S F+A V AS+L DP S +  A GA  GPLH GA E+ 
Sbjct  163  DPEEARALDLYLILHADHEGNASTFTARVVASTLADPYSAIAAAIGALKGPLHGGANEAV  222

Query  292  NLALRVIGTPENVPNFIEEVKQ-GKQRLFGYGHRSYKGVDPRVAPIRSILKDL--DMSSN  348
               L  IG+P+ V  +I +V   GK+R+ G+GHR YK  DPR   ++   ++L  +   +
Sbjct  223  LEMLEEIGSPDEVEEYIRKVLNKGKERIMGFGHRVYKNYDPRAKILKEFAEELAEEGGDD  282

Query  349  SLLKVAERIEQVASADDYFRNRGLYPNADFYGNFVFTEIGFEPDMIPAAMMAQRIMGVMA  408
             LL++AE +E+VA  D YF  + LYPN DFY   ++  +G   DM        R  G +A
Sbjct  283  PLLELAEELEEVAPEDLYFVEKNLYPNVDFYSGVLYHALGIPTDMFTPLFAISRTAGWLA  342

Query  409  HWREYMLKRGKLFRPS  424
            HW E  L   ++ RP 
Sbjct  343  HWIE-QLADNRIIRPR  357



Lambda      K        H        a         alpha
   0.321    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00018591

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal ...  262     2e-85


>CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal domain. 
 This is the long, C-terminal part of the enzyme.
Length=357

 Score = 262 bits (671),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 122/339 (36%), Positives = 179/339 (53%), Gaps = 26/339 (8%)

Query  57   GLQNTTVVETEISFSDHWKRLLLYRGYTLEQLWD-SDFEDMLHLLVWGSYPTALQKKELS  115
            GL+     ETEIS+ D  K +L YRGY +E+L + S FE++ +LL+ G  PT  + +E S
Sbjct  1    GLRGVAAGETEISYIDGEKGILRYRGYDIEELAERSSFEEVAYLLLTGELPTKEELEEFS  60

Query  116  RKLSEEMTMVPKSVHRTIETLPRTTSPLPLMLVGLSACLAYVPESIPASTKPDLYQSNSN  175
             +L+     +P+ V   +  LPR   P+ ++   +SA  A+ PE+I      D      N
Sbjct  61   AELAAHR-ELPEDVLELLRALPRDAHPMAVLRAAVSALAAFDPEAIS-----DKADYWEN  114

Query  176  VLDRAII---RTVAAYAVVFGLVNCHRRGIPFAQPSRHTSYLENLFHLAGLVDQTTGR-P  231
             L   +I    T+AAY         HRRG+P   P    SY EN  ++        G  P
Sbjct  115  ALRDDLIAKLPTIAAYI------YRHRRGLPPIYPDPDLSYAENFLYM------LFGYEP  162

Query  232  DPTKLSCFQRFAMLNADHGMALSVFSALVTASSLTDPISCLITATGAAFGPLHFGATESA  291
            DP +      + +L+ADH    S F+A V AS+L DP S +  A GA  GPLH GA E+ 
Sbjct  163  DPEEARALDLYLILHADHEGNASTFTARVVASTLADPYSAIAAAIGALKGPLHGGANEAV  222

Query  292  NLALRVIGTPENVPNFIEEVKQ-GKQRLFGYGHRSYKGVDPRVAPIRSILKDL--DMSSN  348
               L  IG+P+ V  +I +V   GK+R+ G+GHR YK  DPR   ++   ++L  +   +
Sbjct  223  LEMLEEIGSPDEVEEYIRKVLNKGKERIMGFGHRVYKNYDPRAKILKEFAEELAEEGGDD  282

Query  349  SLLKVAERIEQVASADDYFRNRGLYPNADFYGNFVFTEM  387
             LL++AE +E+VA  D YF  + LYPN DFY   ++  +
Sbjct  283  PLLELAEELEEVAPEDLYFVEKNLYPNVDFYSGVLYHAL  321



Lambda      K        H        a         alpha
   0.320    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00018592

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal ...  218     6e-70


>CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal domain. 
 This is the long, C-terminal part of the enzyme.
Length=357

 Score = 218 bits (558),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 103/297 (35%), Positives = 152/297 (51%), Gaps = 25/297 (8%)

Query  3    HLLVWGSYPTALQKKELSRKLSEEMTMVPKSVHRTIETLPRTTSPLPLMLVGLSACLAYV  62
            +LL+ G  PT  + +E S +L+     +P+ V   +  LPR   P+ ++   +SA  A+ 
Sbjct  43   YLLLTGELPTKEELEEFSAELAAHR-ELPEDVLELLRALPRDAHPMAVLRAAVSALAAFD  101

Query  63   PESIPASTKPDLYQSNSNVLDRAII---RTVAAYAVVFGLVNCHRRGIPFAQPSRHTSYL  119
            PE+I      D      N L   +I    T+AAY         HRRG+P   P    SY 
Sbjct  102  PEAIS-----DKADYWENALRDDLIAKLPTIAAYI------YRHRRGLPPIYPDPDLSYA  150

Query  120  ENLFHLAGLVDQTTGR-PDPTKLSCFQRFAMLNADHGMALSVFSALVTASSLTDPISCLI  178
            EN  ++        G  PDP +      + +L+ADH    S F+A V AS+L DP S + 
Sbjct  151  ENFLYM------LFGYEPDPEEARALDLYLILHADHEGNASTFTARVVASTLADPYSAIA  204

Query  179  TATGAAFGPLHFGATESANLALRVIGTPENVPNFIEEVKQ-GKQRLFGYGHRSYKGVDPR  237
             A GA  GPLH GA E+    L  IG+P+ V  +I +V   GK+R+ G+GHR YK  DPR
Sbjct  205  AAIGALKGPLHGGANEAVLEMLEEIGSPDEVEEYIRKVLNKGKERIMGFGHRVYKNYDPR  264

Query  238  VAPIRSILKDL--DMSSNSLLKVAERIEQVASADDYFRNRGLYPNADFYGNFVFTEM  292
               ++   ++L  +   + LL++AE +E+VA  D YF  + LYPN DFY   ++  +
Sbjct  265  AKILKEFAEELAEEGGDDPLLELAEELEEVAPEDLYFVEKNLYPNVDFYSGVLYHAL  321



Lambda      K        H        a         alpha
   0.321    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00012989

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal ...  290     6e-96


>CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal domain. 
 This is the long, C-terminal part of the enzyme.
Length=357

 Score = 290 bits (745),  Expect = 6e-96, Method: Composition-based stats.
 Identities = 131/366 (36%), Positives = 190/366 (52%), Gaps = 26/366 (7%)

Query  57   GLQNTTVVETEISFSDHWKRLLLYRGYTLEQLWD-SDFEDMLHLLVWGSYPTALQKKELS  115
            GL+     ETEIS+ D  K +L YRGY +E+L + S FE++ +LL+ G  PT  + +E S
Sbjct  1    GLRGVAAGETEISYIDGEKGILRYRGYDIEELAERSSFEEVAYLLLTGELPTKEELEEFS  60

Query  116  RKLSEEMTMVPKSVHRTIETLPRTTSPLPLMLVGLSACLAYVPESIPASTKPDLYQSNSN  175
             +L+     +P+ V   +  LPR   P+ ++   +SA  A+ PE+I      D      N
Sbjct  61   AELAAHR-ELPEDVLELLRALPRDAHPMAVLRAAVSALAAFDPEAIS-----DKADYWEN  114

Query  176  VLDRAII---RTVAAYAVVFGLVNCHRRGIPFAQPSRHTSYLENLFHLAGLVDQTTGR-P  231
             L   +I    T+AAY         HRRG+P   P    SY EN  ++        G  P
Sbjct  115  ALRDDLIAKLPTIAAYI------YRHRRGLPPIYPDPDLSYAENFLYM------LFGYEP  162

Query  232  DPTKLSCFQRFAMLNADHGMALSVFSALVTASSLTDPISCLITATGAAFGPLHFGATESA  291
            DP +      + +L+ADH    S F+A V AS+L DP S +  A GA  GPLH GA E+ 
Sbjct  163  DPEEARALDLYLILHADHEGNASTFTARVVASTLADPYSAIAAAIGALKGPLHGGANEAV  222

Query  292  NLALRVIGTPENVPNFIEEVKQ-GKQRLFGYGHRSYKGVDPRVAPIRSILKDL--DMSSN  348
               L  IG+P+ V  +I +V   GK+R+ G+GHR YK  DPR   ++   ++L  +   +
Sbjct  223  LEMLEEIGSPDEVEEYIRKVLNKGKERIMGFGHRVYKNYDPRAKILKEFAEELAEEGGDD  282

Query  349  SLLKVAERIEQVASADDYFRNRGLYPNADFYGNFVFTEIGFEPDMIPAAMMAQRIMGVMA  408
             LL++AE +E+VA  D YF  + LYPN DFY   ++  +G   DM        R  G +A
Sbjct  283  PLLELAEELEEVAPEDLYFVEKNLYPNVDFYSGVLYHALGIPTDMFTPLFAISRTAGWLA  342

Query  409  HWREYM  414
            HW E +
Sbjct  343  HWIEQL  348



Lambda      K        H        a         alpha
   0.322    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00012988

Length=242
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal ...  180     1e-55


>CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal domain. 
 This is the long, C-terminal part of the enzyme.
Length=357

 Score = 180 bits (458),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 80/212 (38%), Positives = 114/212 (54%), Gaps = 16/212 (8%)

Query  35   AIIRTVAAYAVVFGLVNCHRRGIPFAQPSRHTSYLENLFHLAGLVDQTTGR-PDPTKLSC  93
            A + T+AAY         HRRG+P   P    SY EN  ++        G  PDP +   
Sbjct  122  AKLPTIAAYI------YRHRRGLPPIYPDPDLSYAENFLYM------LFGYEPDPEEARA  169

Query  94   FQRFAMLNADHGMALSVFSALVTASSLTDPISCLITATGAAFGPLHFGATESANLALRVI  153
               + +L+ADH    S F+A V AS+L DP S +  A GA  GPLH GA E+    L  I
Sbjct  170  LDLYLILHADHEGNASTFTARVVASTLADPYSAIAAAIGALKGPLHGGANEAVLEMLEEI  229

Query  154  GTPENVPNFIEEVKQ-GKQRLFGYGHRSYKGVDPRVAPIRSILKDL--DMSSNSLLKVAE  210
            G+P+ V  +I +V   GK+R+ G+GHR YK  DPR   ++   ++L  +   + LL++AE
Sbjct  230  GSPDEVEEYIRKVLNKGKERIMGFGHRVYKNYDPRAKILKEFAEELAEEGGDDPLLELAE  289

Query  211  RIEQVASADDYFRNRGLYPNADFYGNFVFTEM  242
             +E+VA  D YF  + LYPN DFY   ++  +
Sbjct  290  ELEEVAPEDLYFVEKNLYPNVDFYSGVLYHAL  321



Lambda      K        H        a         alpha
   0.322    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00018593

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal ...  215     9e-69


>CDD:459747 pfam00285, Citrate_synt, Citrate synthase, C-terminal domain. 
 This is the long, C-terminal part of the enzyme.
Length=357

 Score = 215 bits (551),  Expect = 9e-69, Method: Composition-based stats.
 Identities = 92/249 (37%), Positives = 129/249 (52%), Gaps = 17/249 (7%)

Query  35   AIIRTVAAYAVVFGLVNCHRRGIPFAQPSRHTSYLENLFHLAGLVDQTTGR-PDPTKLSC  93
            A + T+AAY         HRRG+P   P    SY EN  ++        G  PDP +   
Sbjct  122  AKLPTIAAYI------YRHRRGLPPIYPDPDLSYAENFLYM------LFGYEPDPEEARA  169

Query  94   FQRFAMLNADHGMALSVFSALVTASSLTDPISCLITATGAAFGPLHFGATESANLALRVI  153
               + +L+ADH    S F+A V AS+L DP S +  A GA  GPLH GA E+    L  I
Sbjct  170  LDLYLILHADHEGNASTFTARVVASTLADPYSAIAAAIGALKGPLHGGANEAVLEMLEEI  229

Query  154  GTPENVPNFIEEVKQ-GKQRLFGYGHRSYKGVDPRVAPIRSILKDL--DMSSNSLLKVAE  210
            G+P+ V  +I +V   GK+R+ G+GHR YK  DPR   ++   ++L  +   + LL++AE
Sbjct  230  GSPDEVEEYIRKVLNKGKERIMGFGHRVYKNYDPRAKILKEFAEELAEEGGDDPLLELAE  289

Query  211  RIEQVASADDYFRNRGLYPNADFYGNFVFTEIGFEPDMIPAAMMAQRIMGVMAHWREYML  270
             +E+VA  D YF  + LYPN DFY   ++  +G   DM        R  G +AHW E  L
Sbjct  290  ELEEVAPEDLYFVEKNLYPNVDFYSGVLYHALGIPTDMFTPLFAISRTAGWLAHWIE-QL  348

Query  271  KRGKLFRPS  279
               ++ RP 
Sbjct  349  ADNRIIRPR  357



Lambda      K        H        a         alpha
   0.322    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00012990

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            101     5e-24


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 101 bits (253),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 50/174 (29%), Positives = 88/174 (51%), Gaps = 1/174 (1%)

Query  44   ALASSFSPFSANIYYPSL-NSIAADLHVTSSQINLTITTYMICQGLAPSFMSSFADQAGR  102
             LA+  +    ++  P+L   +A DL ++ ++I L +T + +   LA       +D+ GR
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  103  RPAYIVCFVIYIIGNIALALQHNYIALLALRAVQSCGSSGTVALASAVAADVITSAERGM  162
            R   ++  +++ +G + L    +   LL LR +Q  G+      A A+ AD     ERG 
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  163  YMGITSLGNILAPSLGPILGGFLSQYLGWQAIFWLLAFAAVTFFIPLVIFFPET  216
             +G+ S G  L  +LGP+LGG L+   GW+A F +LA  ++   + L++  P  
Sbjct  122  ALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPP  175



Lambda      K        H        a         alpha
   0.324    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00018594

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00012991

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00012992

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00012993

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460090 pfam01161, PBP, Phosphatidylethanolamine-binding protein   89.3    2e-23


>CDD:460090 pfam01161, PBP, Phosphatidylethanolamine-binding protein.  
Length=136

 Score = 89.3 bits (222),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 64/149 (43%), Gaps = 17/149 (11%)

Query  57   DFHTCLAEDSKGRFPELRWTSPPQGDVKEYVLICEDIDLP-IPRLVIHHGLFYGIPPTIT  115
              +TC   ++    P L W+  P G  K + L+  D D P +      H +   IP T+T
Sbjct  4    VKYTCGGPNTS---PPLAWSGAPAGT-KSFALVMIDPDAPKVGGSGWLHWVVTNIPATVT  59

Query  116  TATYADIKQKKDAGERLTRSNWKYVPNLTGNSYIGPAPPLGHGLHRYVFTIIALNEPLQF  175
                 ++ +   AG     +++       G  Y GP PP G G HRYVFT+ AL+ PL  
Sbjct  60   -----ELPEGAPAGAVQGLNDF------GGAGYGGPCPPAGDGPHRYVFTLYALDVPLL-  107

Query  176  AQGEQVSKQMIKEAMVGKVIGWGQWVGLW  204
             +    +K  +  A  G V+      G +
Sbjct  108  DRNWGFTKAELGVAFAGHVLALAVLAGNY  136



Lambda      K        H        a         alpha
   0.321    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00012994

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460090 pfam01161, PBP, Phosphatidylethanolamine-binding protein   89.3    2e-23


>CDD:460090 pfam01161, PBP, Phosphatidylethanolamine-binding protein.  
Length=136

 Score = 89.3 bits (222),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 64/149 (43%), Gaps = 17/149 (11%)

Query  57   DFHTCLAEDSKGRFPELRWTSPPQGDVKEYVLICEDIDLP-IPRLVIHHGLFYGIPPTIT  115
              +TC   ++    P L W+  P G  K + L+  D D P +      H +   IP T+T
Sbjct  4    VKYTCGGPNTS---PPLAWSGAPAGT-KSFALVMIDPDAPKVGGSGWLHWVVTNIPATVT  59

Query  116  TATYADIKQKKDAGERLTRSNWKYVPNLTGNSYIGPAPPLGHGLHRYVFTIIALNEPLQF  175
                 ++ +   AG     +++       G  Y GP PP G G HRYVFT+ AL+ PL  
Sbjct  60   -----ELPEGAPAGAVQGLNDF------GGAGYGGPCPPAGDGPHRYVFTLYALDVPLL-  107

Query  176  AQGEQVSKQMIKEAMVGKVIGWGQWVGLW  204
             +    +K  +  A  G V+      G +
Sbjct  108  DRNWGFTKAELGVAFAGHVLALAVLAGNY  136



Lambda      K        H        a         alpha
   0.321    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00012995

Length=532


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00012996

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00012997

Length=613
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like. Autopha...  576     0.0  


>CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like.  Autophagy is 
a major survival survival mechanism in which eukaryotes recycle 
cellular nutrients during stress conditions. Atg22, Avt3 
and Avt4 are partially redundant vacuolar effluxes, which mediate 
the efflux of leucine and other amino acids resulting 
from autophagy. This family also includes other transporter 
proteins.
Length=479

 Score = 576 bits (1488),  Expect = 0.0, Method: Composition-based stats.
 Identities = 254/553 (46%), Positives = 344/553 (62%), Gaps = 75/553 (14%)

Query  30   TSQKEIWGWYAYGIAAEVFAVCGVGSFLPLTLEQLAREHGTLLSSH-LPCVRFSSPSTAP  88
            T++KE+WGWY Y  AAE FAV  +GSF+PLTL+QLARE+G LLS H  PC          
Sbjct  1    TTKKELWGWYLYCFAAEPFAVMAMGSFVPLTLQQLARENGVLLSDHSAPC----------  50

Query  89   GNGTTTATFRRDGTDNDQCVVSVLGLQVNTASFAMYTFSLAVLVQALTLISFSALADYEN  148
                          D DQCVV   G +++T SF +YTFS++VL+QA+  IS S +ADY N
Sbjct  51   ------------SADGDQCVVYFGGGEIDTTSFVLYTFSISVLLQAVVFISLSGIADYGN  98

Query  149  NRKTLLLAFGFIGSMTSMLFIFIAPPVYILASLLVVVGVTCLGSSFVVLNSFLPVLVAND  208
             RK LL+AF  IGS ++MLF+ + P  Y+L ++L +VG TC G+SFV LNSFLP+L  ND
Sbjct  99   YRKNLLIAFALIGSASTMLFLGVTPKKYLLGAILYIVGNTCFGASFVFLNSFLPLLARND  158

Query  209  PSIQTAHKEQGEELSPVNSNGEFVRFEDLDEEISRDSDDHFTTGHRPKTKAAGSASPELQ  268
            P ++ A +                  +D +  I+ +  D                S ELQ
Sbjct  159  PELRAAAEA----------------LQDGESAITAEEYD----------------SLELQ  186

Query  269  LSTRISSKGVGLGYCAAVLVQILSILMLFALSKTSLPKISGTLPLRFVLLLVGIWWFSFT  328
            L TRISS+G G+GY   +LVQI+SI++++AL  T+    + T  LR  +   G WW  FT
Sbjct  187  LRTRISSRGFGIGYIGGILVQIISIIIVYALGSTA---SNNTWALRLAITFAGCWWIIFT  243

Query  329  MVSRRWLRDRPGPPLASSKGAARNSRWRIWLRLIGFAWKSLWKTAKVAVKLREVIIFLIA  388
            +    WLR RPGPPL S             L  + + WK L +T K A KL++ ++FL+A
Sbjct  244  IPWALWLRPRPGPPLPS------------GLNYLIYGWKQLGRTLKQARKLKDALLFLVA  291

Query  389  WFLLSDAMATVSGTAILFARTELKMSTTAVGLLSITATLSGMAGAFLWPVVSRRLRLKSN  448
            WFLLSD +ATVS TA+LFA+TEL MST+ + LL+I A ++ + GAFLWP VSRR  LK+ 
Sbjct  292  WFLLSDGIATVSSTAVLFAKTELGMSTSQLTLLNIVAMIAAVLGAFLWPFVSRRFNLKTK  351

Query  449  HTIMLCIALFEVIPLYGMLAYIPLFKKWGVVGLQQPWEIFPLGIVHGLVSGGLSSYCRSF  508
             T++ CI LFE+IPLYG+L  I      G +GL+ PWE + L   +GLV GGL SY RS 
Sbjct  352  QTLIACIVLFELIPLYGLLGII-----LGKIGLKNPWEFWVLQAFYGLVLGGLRSYSRSL  406

Query  509  FGLLIPPGSEAAFYALYAATDKGSSFIGPAIVGMLIDATGQVRSGFFFIAVLILLPIPLI  568
            +  LIP G EA F++LYA TDKGSS+IGP IVG + D TG +RS F F+A+L+++P+PL+
Sbjct  407  YSELIPRGKEAQFFSLYAITDKGSSWIGPLIVGAIQDRTGNIRSPFVFLAILLVVPLPLL  466

Query  569  WMVNAEKGRQDGL  581
             +V+ E+GR++  
Sbjct  467  LLVDVERGRREAA  479



Lambda      K        H        a         alpha
   0.323    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 778596988


Query= TCONS_00012998

Length=613
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like. Autopha...  576     0.0  


>CDD:371676 pfam11700, ATG22, Vacuole effluxer Atg22 like.  Autophagy is 
a major survival survival mechanism in which eukaryotes recycle 
cellular nutrients during stress conditions. Atg22, Avt3 
and Avt4 are partially redundant vacuolar effluxes, which mediate 
the efflux of leucine and other amino acids resulting 
from autophagy. This family also includes other transporter 
proteins.
Length=479

 Score = 576 bits (1488),  Expect = 0.0, Method: Composition-based stats.
 Identities = 254/553 (46%), Positives = 344/553 (62%), Gaps = 75/553 (14%)

Query  30   TSQKEIWGWYAYGIAAEVFAVCGVGSFLPLTLEQLAREHGTLLSSH-LPCVRFSSPSTAP  88
            T++KE+WGWY Y  AAE FAV  +GSF+PLTL+QLARE+G LLS H  PC          
Sbjct  1    TTKKELWGWYLYCFAAEPFAVMAMGSFVPLTLQQLARENGVLLSDHSAPC----------  50

Query  89   GNGTTTATFRRDGTDNDQCVVSVLGLQVNTASFAMYTFSLAVLVQALTLISFSALADYEN  148
                          D DQCVV   G +++T SF +YTFS++VL+QA+  IS S +ADY N
Sbjct  51   ------------SADGDQCVVYFGGGEIDTTSFVLYTFSISVLLQAVVFISLSGIADYGN  98

Query  149  NRKTLLLAFGFIGSMTSMLFIFIAPPVYILASLLVVVGVTCLGSSFVVLNSFLPVLVAND  208
             RK LL+AF  IGS ++MLF+ + P  Y+L ++L +VG TC G+SFV LNSFLP+L  ND
Sbjct  99   YRKNLLIAFALIGSASTMLFLGVTPKKYLLGAILYIVGNTCFGASFVFLNSFLPLLARND  158

Query  209  PSIQTAHKEQGEELSPVNSNGEFVRFEDLDEEISRDSDDHFTTGHRPKTKAAGSASPELQ  268
            P ++ A +                  +D +  I+ +  D                S ELQ
Sbjct  159  PELRAAAEA----------------LQDGESAITAEEYD----------------SLELQ  186

Query  269  LSTRISSKGVGLGYCAAVLVQILSILMLFALSKTSLPKISGTLPLRFVLLLVGIWWFSFT  328
            L TRISS+G G+GY   +LVQI+SI++++AL  T+    + T  LR  +   G WW  FT
Sbjct  187  LRTRISSRGFGIGYIGGILVQIISIIIVYALGSTA---SNNTWALRLAITFAGCWWIIFT  243

Query  329  MVSRRWLRDRPGPPLASSKGAARNSRWRIWLRLIGFAWKSLWKTAKVAVKLREVIIFLIA  388
            +    WLR RPGPPL S             L  + + WK L +T K A KL++ ++FL+A
Sbjct  244  IPWALWLRPRPGPPLPS------------GLNYLIYGWKQLGRTLKQARKLKDALLFLVA  291

Query  389  WFLLSDAMATVSGTAILFARTELKMSTTAVGLLSITATLSGMAGAFLWPVVSRRLRLKSN  448
            WFLLSD +ATVS TA+LFA+TEL MST+ + LL+I A ++ + GAFLWP VSRR  LK+ 
Sbjct  292  WFLLSDGIATVSSTAVLFAKTELGMSTSQLTLLNIVAMIAAVLGAFLWPFVSRRFNLKTK  351

Query  449  HTIMLCIALFEVIPLYGMLAYIPLFKKWGVVGLQQPWEIFPLGIVHGLVSGGLSSYCRSF  508
             T++ CI LFE+IPLYG+L  I      G +GL+ PWE + L   +GLV GGL SY RS 
Sbjct  352  QTLIACIVLFELIPLYGLLGII-----LGKIGLKNPWEFWVLQAFYGLVLGGLRSYSRSL  406

Query  509  FGLLIPPGSEAAFYALYAATDKGSSFIGPAIVGMLIDATGQVRSGFFFIAVLILLPIPLI  568
            +  LIP G EA F++LYA TDKGSS+IGP IVG + D TG +RS F F+A+L+++P+PL+
Sbjct  407  YSELIPRGKEAQFFSLYAITDKGSSWIGPLIVGAIQDRTGNIRSPFVFLAILLVVPLPLL  466

Query  569  WMVNAEKGRQDGL  581
             +V+ E+GR++  
Sbjct  467  LLVDVERGRREAA  479



Lambda      K        H        a         alpha
   0.323    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 778596988


Query= TCONS_00012999

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  228     6e-76
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  168     1e-52


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 228 bits (585),  Expect = 6e-76, Method: Composition-based stats.
 Identities = 85/245 (35%), Positives = 115/245 (47%), Gaps = 17/245 (7%)

Query  26   GASGPRGMGIEAARGCAEMGANIALTYASRPEGGEKNAAEIAKTYGVKAKAYKCNVGDWE  85
            GA+   G+G   AR  AE GA + LT     E   K   E+A+  G  A    C+V D E
Sbjct  1    GAANESGIGWAIARALAEEGAEVVLTD--LNEALAKRVEELAEELG--AAVLPCDVTDEE  56

Query  86   SVQKLVADVIAEFGQIDAFIANAG--RTASAGILDGSVNDWAEVIQTDLTGTFYCAKAVG  143
             V+ LVA  + +FG++D  + NAG         LD S  D+   +  +L   F  AKA  
Sbjct  57   QVEALVAAAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAAL  116

Query  144  PHFKERGKGSFVITSSMSGHIA--NYPQEQTSYNVAKAGCIHFAKSLANEW-RDFARVNS  200
            P  KE G  S V  SS+       NY     +Y  AKA      + LA E      RVN+
Sbjct  117  PLMKEGG--SIVNLSSIGAERVVPNY----NAYGAAKAALEALTRYLAVELGPRGIRVNA  170

Query  201  ISPGYIDTGLSDFVD--KKTQDLWLSMIPMGRNGDAKELKGAYVYLCSDASSYMTGTDLL  258
            ISPG I T  +  +    +      +  P+GR G  +E+  A  +L SD +SY+TG  L 
Sbjct  171  ISPGPIKTLAASGIPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDLASYITGQVLY  230

Query  259  IDGGY  263
            +DGGY
Sbjct  231  VDGGY  235


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 168 bits (427),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 94/192 (49%), Gaps = 7/192 (4%)

Query  20   KTVVVTGASGPRGMGIEAARGCAEMGANIALTYASRPEGGEKNAAEIAKTYGVKAKAYKC  79
            K  +VTGAS   G+G   A+  A+ GA + L      E  E  A E+    G KA   + 
Sbjct  1    KVALVTGAS--SGIGRAIAKRLAKEGAKVVLV-DRSEEKLEAVAKEL-GALGGKALFIQG  56

Query  80   NVGDWESVQKLVADVIAEFGQIDAFIANAGRTASAGILDGSVNDWAEVIQTDLTGTFYCA  139
            +V D   V+ LV   +   G++D  + NAG T      + S  DW  VI  +LTG F   
Sbjct  57   DVTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLT  116

Query  140  KAVGPHFKERGKGSFVITSSMSGHIANYPQEQTSYNVAKAGCIHFAKSLANEWRDFA-RV  198
            +AV P   +   G  V  SS++G +       ++Y+ +KA  I F +SLA E      RV
Sbjct  117  RAVLPAMIKGSGGRIVNISSVAGLVPYP--GGSAYSASKAAVIGFTRSLALELAPHGIRV  174

Query  199  NSISPGYIDTGL  210
            N+++PG +DT +
Sbjct  175  NAVAPGGVDTDM  186



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0774    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00013000

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  228     6e-76
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  168     1e-52


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 228 bits (585),  Expect = 6e-76, Method: Composition-based stats.
 Identities = 85/245 (35%), Positives = 115/245 (47%), Gaps = 17/245 (7%)

Query  26   GASGPRGMGIEAARGCAEMGANIALTYASRPEGGEKNAAEIAKTYGVKAKAYKCNVGDWE  85
            GA+   G+G   AR  AE GA + LT     E   K   E+A+  G  A    C+V D E
Sbjct  1    GAANESGIGWAIARALAEEGAEVVLTD--LNEALAKRVEELAEELG--AAVLPCDVTDEE  56

Query  86   SVQKLVADVIAEFGQIDAFIANAG--RTASAGILDGSVNDWAEVIQTDLTGTFYCAKAVG  143
             V+ LVA  + +FG++D  + NAG         LD S  D+   +  +L   F  AKA  
Sbjct  57   QVEALVAAAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAAL  116

Query  144  PHFKERGKGSFVITSSMSGHIA--NYPQEQTSYNVAKAGCIHFAKSLANEW-RDFARVNS  200
            P  KE G  S V  SS+       NY     +Y  AKA      + LA E      RVN+
Sbjct  117  PLMKEGG--SIVNLSSIGAERVVPNY----NAYGAAKAALEALTRYLAVELGPRGIRVNA  170

Query  201  ISPGYIDTGLSDFVD--KKTQDLWLSMIPMGRNGDAKELKGAYVYLCSDASSYMTGTDLL  258
            ISPG I T  +  +    +      +  P+GR G  +E+  A  +L SD +SY+TG  L 
Sbjct  171  ISPGPIKTLAASGIPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDLASYITGQVLY  230

Query  259  IDGGY  263
            +DGGY
Sbjct  231  VDGGY  235


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 168 bits (427),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 94/192 (49%), Gaps = 7/192 (4%)

Query  20   KTVVVTGASGPRGMGIEAARGCAEMGANIALTYASRPEGGEKNAAEIAKTYGVKAKAYKC  79
            K  +VTGAS   G+G   A+  A+ GA + L      E  E  A E+    G KA   + 
Sbjct  1    KVALVTGAS--SGIGRAIAKRLAKEGAKVVLV-DRSEEKLEAVAKEL-GALGGKALFIQG  56

Query  80   NVGDWESVQKLVADVIAEFGQIDAFIANAGRTASAGILDGSVNDWAEVIQTDLTGTFYCA  139
            +V D   V+ LV   +   G++D  + NAG T      + S  DW  VI  +LTG F   
Sbjct  57   DVTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLT  116

Query  140  KAVGPHFKERGKGSFVITSSMSGHIANYPQEQTSYNVAKAGCIHFAKSLANEWRDFA-RV  198
            +AV P   +   G  V  SS++G +       ++Y+ +KA  I F +SLA E      RV
Sbjct  117  RAVLPAMIKGSGGRIVNISSVAGLVPYP--GGSAYSASKAAVIGFTRSLALELAPHGIRV  174

Query  199  NSISPGYIDTGL  210
            N+++PG +DT +
Sbjct  175  NAVAPGGVDTDM  186



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00013004

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  228     6e-76
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  168     1e-52


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 228 bits (585),  Expect = 6e-76, Method: Composition-based stats.
 Identities = 85/245 (35%), Positives = 115/245 (47%), Gaps = 17/245 (7%)

Query  26   GASGPRGMGIEAARGCAEMGANIALTYASRPEGGEKNAAEIAKTYGVKAKAYKCNVGDWE  85
            GA+   G+G   AR  AE GA + LT     E   K   E+A+  G  A    C+V D E
Sbjct  1    GAANESGIGWAIARALAEEGAEVVLTD--LNEALAKRVEELAEELG--AAVLPCDVTDEE  56

Query  86   SVQKLVADVIAEFGQIDAFIANAG--RTASAGILDGSVNDWAEVIQTDLTGTFYCAKAVG  143
             V+ LVA  + +FG++D  + NAG         LD S  D+   +  +L   F  AKA  
Sbjct  57   QVEALVAAAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAAL  116

Query  144  PHFKERGKGSFVITSSMSGHIA--NYPQEQTSYNVAKAGCIHFAKSLANEW-RDFARVNS  200
            P  KE G  S V  SS+       NY     +Y  AKA      + LA E      RVN+
Sbjct  117  PLMKEGG--SIVNLSSIGAERVVPNY----NAYGAAKAALEALTRYLAVELGPRGIRVNA  170

Query  201  ISPGYIDTGLSDFVD--KKTQDLWLSMIPMGRNGDAKELKGAYVYLCSDASSYMTGTDLL  258
            ISPG I T  +  +    +      +  P+GR G  +E+  A  +L SD +SY+TG  L 
Sbjct  171  ISPGPIKTLAASGIPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDLASYITGQVLY  230

Query  259  IDGGY  263
            +DGGY
Sbjct  231  VDGGY  235


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 168 bits (427),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 94/192 (49%), Gaps = 7/192 (4%)

Query  20   KTVVVTGASGPRGMGIEAARGCAEMGANIALTYASRPEGGEKNAAEIAKTYGVKAKAYKC  79
            K  +VTGAS   G+G   A+  A+ GA + L      E  E  A E+    G KA   + 
Sbjct  1    KVALVTGAS--SGIGRAIAKRLAKEGAKVVLV-DRSEEKLEAVAKEL-GALGGKALFIQG  56

Query  80   NVGDWESVQKLVADVIAEFGQIDAFIANAGRTASAGILDGSVNDWAEVIQTDLTGTFYCA  139
            +V D   V+ LV   +   G++D  + NAG T      + S  DW  VI  +LTG F   
Sbjct  57   DVTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLT  116

Query  140  KAVGPHFKERGKGSFVITSSMSGHIANYPQEQTSYNVAKAGCIHFAKSLANEWRDFA-RV  198
            +AV P   +   G  V  SS++G +       ++Y+ +KA  I F +SLA E      RV
Sbjct  117  RAVLPAMIKGSGGRIVNISSVAGLVPYP--GGSAYSASKAAVIGFTRSLALELAPHGIRV  174

Query  199  NSISPGYIDTGL  210
            N+++PG +DT +
Sbjct  175  NAVAPGGVDTDM  186



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00013001

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  228     6e-76
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  168     1e-52


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 228 bits (585),  Expect = 6e-76, Method: Composition-based stats.
 Identities = 85/245 (35%), Positives = 115/245 (47%), Gaps = 17/245 (7%)

Query  26   GASGPRGMGIEAARGCAEMGANIALTYASRPEGGEKNAAEIAKTYGVKAKAYKCNVGDWE  85
            GA+   G+G   AR  AE GA + LT     E   K   E+A+  G  A    C+V D E
Sbjct  1    GAANESGIGWAIARALAEEGAEVVLTD--LNEALAKRVEELAEELG--AAVLPCDVTDEE  56

Query  86   SVQKLVADVIAEFGQIDAFIANAG--RTASAGILDGSVNDWAEVIQTDLTGTFYCAKAVG  143
             V+ LVA  + +FG++D  + NAG         LD S  D+   +  +L   F  AKA  
Sbjct  57   QVEALVAAAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAAL  116

Query  144  PHFKERGKGSFVITSSMSGHIA--NYPQEQTSYNVAKAGCIHFAKSLANEW-RDFARVNS  200
            P  KE G  S V  SS+       NY     +Y  AKA      + LA E      RVN+
Sbjct  117  PLMKEGG--SIVNLSSIGAERVVPNY----NAYGAAKAALEALTRYLAVELGPRGIRVNA  170

Query  201  ISPGYIDTGLSDFVD--KKTQDLWLSMIPMGRNGDAKELKGAYVYLCSDASSYMTGTDLL  258
            ISPG I T  +  +    +      +  P+GR G  +E+  A  +L SD +SY+TG  L 
Sbjct  171  ISPGPIKTLAASGIPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDLASYITGQVLY  230

Query  259  IDGGY  263
            +DGGY
Sbjct  231  VDGGY  235


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 168 bits (427),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 94/192 (49%), Gaps = 7/192 (4%)

Query  20   KTVVVTGASGPRGMGIEAARGCAEMGANIALTYASRPEGGEKNAAEIAKTYGVKAKAYKC  79
            K  +VTGAS   G+G   A+  A+ GA + L      E  E  A E+    G KA   + 
Sbjct  1    KVALVTGAS--SGIGRAIAKRLAKEGAKVVLV-DRSEEKLEAVAKEL-GALGGKALFIQG  56

Query  80   NVGDWESVQKLVADVIAEFGQIDAFIANAGRTASAGILDGSVNDWAEVIQTDLTGTFYCA  139
            +V D   V+ LV   +   G++D  + NAG T      + S  DW  VI  +LTG F   
Sbjct  57   DVTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLT  116

Query  140  KAVGPHFKERGKGSFVITSSMSGHIANYPQEQTSYNVAKAGCIHFAKSLANEWRDFA-RV  198
            +AV P   +   G  V  SS++G +       ++Y+ +KA  I F +SLA E      RV
Sbjct  117  RAVLPAMIKGSGGRIVNISSVAGLVPYP--GGSAYSASKAAVIGFTRSLALELAPHGIRV  174

Query  199  NSISPGYIDTGL  210
            N+++PG +DT +
Sbjct  175  NAVAPGGVDTDM  186



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00013005

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  228     6e-76
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  168     1e-52


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 228 bits (585),  Expect = 6e-76, Method: Composition-based stats.
 Identities = 85/245 (35%), Positives = 115/245 (47%), Gaps = 17/245 (7%)

Query  26   GASGPRGMGIEAARGCAEMGANIALTYASRPEGGEKNAAEIAKTYGVKAKAYKCNVGDWE  85
            GA+   G+G   AR  AE GA + LT     E   K   E+A+  G  A    C+V D E
Sbjct  1    GAANESGIGWAIARALAEEGAEVVLTD--LNEALAKRVEELAEELG--AAVLPCDVTDEE  56

Query  86   SVQKLVADVIAEFGQIDAFIANAG--RTASAGILDGSVNDWAEVIQTDLTGTFYCAKAVG  143
             V+ LVA  + +FG++D  + NAG         LD S  D+   +  +L   F  AKA  
Sbjct  57   QVEALVAAAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAAL  116

Query  144  PHFKERGKGSFVITSSMSGHIA--NYPQEQTSYNVAKAGCIHFAKSLANEW-RDFARVNS  200
            P  KE G  S V  SS+       NY     +Y  AKA      + LA E      RVN+
Sbjct  117  PLMKEGG--SIVNLSSIGAERVVPNY----NAYGAAKAALEALTRYLAVELGPRGIRVNA  170

Query  201  ISPGYIDTGLSDFVD--KKTQDLWLSMIPMGRNGDAKELKGAYVYLCSDASSYMTGTDLL  258
            ISPG I T  +  +    +      +  P+GR G  +E+  A  +L SD +SY+TG  L 
Sbjct  171  ISPGPIKTLAASGIPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDLASYITGQVLY  230

Query  259  IDGGY  263
            +DGGY
Sbjct  231  VDGGY  235


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 168 bits (427),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 94/192 (49%), Gaps = 7/192 (4%)

Query  20   KTVVVTGASGPRGMGIEAARGCAEMGANIALTYASRPEGGEKNAAEIAKTYGVKAKAYKC  79
            K  +VTGAS   G+G   A+  A+ GA + L      E  E  A E+    G KA   + 
Sbjct  1    KVALVTGAS--SGIGRAIAKRLAKEGAKVVLV-DRSEEKLEAVAKEL-GALGGKALFIQG  56

Query  80   NVGDWESVQKLVADVIAEFGQIDAFIANAGRTASAGILDGSVNDWAEVIQTDLTGTFYCA  139
            +V D   V+ LV   +   G++D  + NAG T      + S  DW  VI  +LTG F   
Sbjct  57   DVTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLT  116

Query  140  KAVGPHFKERGKGSFVITSSMSGHIANYPQEQTSYNVAKAGCIHFAKSLANEWRDFA-RV  198
            +AV P   +   G  V  SS++G +       ++Y+ +KA  I F +SLA E      RV
Sbjct  117  RAVLPAMIKGSGGRIVNISSVAGLVPYP--GGSAYSASKAAVIGFTRSLALELAPHGIRV  174

Query  199  NSISPGYIDTGL  210
            N+++PG +DT +
Sbjct  175  NAVAPGGVDTDM  186



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00013002

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         257     4e-81
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            65.5    4e-12


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 257 bits (660),  Expect = 4e-81, Method: Composition-based stats.
 Identities = 162/463 (35%), Positives = 244/463 (53%), Gaps = 19/463 (4%)

Query  18   CLVVCPAFVTYGYNLSVAGGLLTLESFVKTFPQIDTVNTTGAQQHYNSTIQGTVVALFTV  77
             LV       +GY+  V G  LTL  F K F    +V++  A     S + G +V++F+V
Sbjct  2    ALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAAL----SVLSGLIVSIFSV  57

Query  78   GGIFGSLSCIYLGDRLGRRKVVFLASGVTIVGAVLMATAFD---FAQFIVARLVLGLGTG  134
            G   GSL    LGDR GR+K + +A+ + ++GAVL   A       Q IV R+++G+G G
Sbjct  58   GCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVG  117

Query  135  AYLATVPVWQSEISKASKRGAHVVTDGIFIGIGVSLSLWIDFGFYFITGKSVSWRFPLAF  194
                  P++ SEI+    RGA      + I  G+ L+     G    T  S  WR PL  
Sbjct  118  GASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLN-KTSNSDGWRIPLGL  176

Query  195  QIVLLLTVMVFIVIFPESPRWLVKKGRVQEAREILAALADVEPDSESVSADIRDIELSLS  254
            Q+V  L +++ ++  PESPRWLV+KGR++EARE+LA L  V      +      +E    
Sbjct  177  QLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQE  236

Query  255  ICGNGSFKSMLTMGEQRLFNRTLLAAGGQMFQQMCGINLISMYATTIFEQYLGMS-AINA  313
                   +   T   ++   R L+    Q+FQQ+ GIN I  Y+TTIFE  LG+S +   
Sbjct  237  AEKASWKELFSTKTRRQ---RLLIGVMLQIFQQLTGINAIFYYSTTIFEN-LGLSDSFLV  292

Query  314  RILAGAMCLTQPLGGFLAFFTIDRLGRRPLMLWSAAAMSLSMAILAGTTSVTDNT--GAT  371
             I+ G +        F+A F +DR GRRPL+L  AA M++   IL     +  +    A 
Sbjct  293  TIIVGVVNFVFT---FIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAG  349

Query  372  VVAVIFLFVFQFIFTVGYSGLTFLYATEVAPLQLRAAISAVSTAAVWTFNFLLAQVTPVG  431
            +VA++F+ +F   F +G+  + ++  +E+ PL +R+   A++TAA W  NFL+  + P+ 
Sbjct  350  IVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPII  409

Query  432  FNSIG-YQYYIIFAVLNAAIVPTVYLFFPETNGRTLEEIDEIF  473
             ++IG    + IFA L    +  V+ F PET GRTLEEIDE+F
Sbjct  410  TDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 65.5 bits (160),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 125/355 (35%), Gaps = 47/355 (13%)

Query  62   HYNSTIQGTVVALFTVGGIFGSLSCIYLGDRLGRRKVVFLASGVTIVGAVLMATAFDFAQ  121
              + T  G ++ LF++G          L DR GRR+V+ +   +  +G +L+  A     
Sbjct  28   GISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWL  87

Query  122  FIVARLVLGLGTGAYLATVPVWQSEISKASKRGAHVVTDGIFIGIGVSLSLWIDFGFYFI  181
             +V R++ GLG GA         ++     +RG  +       G+G +L   +  G    
Sbjct  88   LLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLL--GGLLA  145

Query  182  TGKSVSWRFPLAFQIVLLLTVMVFIVIFPESPRWLVKKGRVQEAREILAALADVEPDSES  241
            +     WR       +L L   V +++    P                    + +    +
Sbjct  146  S--LFGWRAAFLILAILSLLAAVLLLLPRPPP--------------------ESKRPKPA  183

Query  242  VSADIRDIELSLSICGNGSFKSMLTMGEQRLFNRTLLAAGGQMFQQMCGINLISMYATTI  301
              A +  I    ++  +     +L                  +         +  Y   +
Sbjct  184  EEARLSLIVAWKALLRDPVLWLLLA-----------------LLLFGFAFFGLLTY-LPL  225

Query  302  FEQYLGMSAINARILAGAMCLTQPLGGFLAFFTIDRLGRRPLMLWSAAAMSLSMAILAGT  361
            +++ LG+SA+ A +L G   L   +G  L     DRLGRR  +L +   + L+   L   
Sbjct  226  YQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLL  285

Query  362  TSVTDNTGATVVAVIFLFVFQFIFTVGYSGLTFLYATEVAPLQLRAAISAVSTAA  416
            +    +    +  ++  F F  +F            +++AP + R   S +   A
Sbjct  286  SLTLSSLWLLLALLLLGFGFGLVFP-----ALNALVSDLAPKEERGTASGLYNTA  335



Lambda      K        H        a         alpha
   0.327    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00013003

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         137     1e-38


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 137 bits (348),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 78/203 (38%), Positives = 118/203 (58%), Gaps = 8/203 (4%)

Query  12   RTLLAAGGQMFQQMCGINLISMYATTIFEQYLGMS-AINARILAGAMCLTQPLGGFLAFF  70
            R L+    Q+FQQ+ GIN I  Y+TTIFE  LG+S +    I+ G +        F+A F
Sbjct  254  RLLIGVMLQIFQQLTGINAIFYYSTTIFEN-LGLSDSFLVTIIVGVVNFVFT---FIAIF  309

Query  71   TIDRLGRRPLMLWSAAAMSLSMAILAGTTSVTDNT--GATVVAVIFLFVFQFIFTVGYSG  128
             +DR GRRPL+L  AA M++   IL     +  +    A +VA++F+ +F   F +G+  
Sbjct  310  LVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIVFIALFIAFFAMGWGP  369

Query  129  LTFLYATEVAPLQLRAAISAVSTAAVWTFNFLLAQVTPVGFNSIG-YQYYIIFAVLNAAI  187
            + ++  +E+ PL +R+   A++TAA W  NFL+  + P+  ++IG    + IFA L    
Sbjct  370  VPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLF  429

Query  188  VPTVYLFFPETNGRTLEEIDEIF  210
            +  V+ F PET GRTLEEIDE+F
Sbjct  430  IIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.329    0.139    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00018596

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  228     6e-76
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  168     1e-52


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 228 bits (585),  Expect = 6e-76, Method: Composition-based stats.
 Identities = 85/245 (35%), Positives = 115/245 (47%), Gaps = 17/245 (7%)

Query  26   GASGPRGMGIEAARGCAEMGANIALTYASRPEGGEKNAAEIAKTYGVKAKAYKCNVGDWE  85
            GA+   G+G   AR  AE GA + LT     E   K   E+A+  G  A    C+V D E
Sbjct  1    GAANESGIGWAIARALAEEGAEVVLTD--LNEALAKRVEELAEELG--AAVLPCDVTDEE  56

Query  86   SVQKLVADVIAEFGQIDAFIANAG--RTASAGILDGSVNDWAEVIQTDLTGTFYCAKAVG  143
             V+ LVA  + +FG++D  + NAG         LD S  D+   +  +L   F  AKA  
Sbjct  57   QVEALVAAAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAAL  116

Query  144  PHFKERGKGSFVITSSMSGHIA--NYPQEQTSYNVAKAGCIHFAKSLANEW-RDFARVNS  200
            P  KE G  S V  SS+       NY     +Y  AKA      + LA E      RVN+
Sbjct  117  PLMKEGG--SIVNLSSIGAERVVPNY----NAYGAAKAALEALTRYLAVELGPRGIRVNA  170

Query  201  ISPGYIDTGLSDFVD--KKTQDLWLSMIPMGRNGDAKELKGAYVYLCSDASSYMTGTDLL  258
            ISPG I T  +  +    +      +  P+GR G  +E+  A  +L SD +SY+TG  L 
Sbjct  171  ISPGPIKTLAASGIPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDLASYITGQVLY  230

Query  259  IDGGY  263
            +DGGY
Sbjct  231  VDGGY  235


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 168 bits (427),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 94/192 (49%), Gaps = 7/192 (4%)

Query  20   KTVVVTGASGPRGMGIEAARGCAEMGANIALTYASRPEGGEKNAAEIAKTYGVKAKAYKC  79
            K  +VTGAS   G+G   A+  A+ GA + L      E  E  A E+    G KA   + 
Sbjct  1    KVALVTGAS--SGIGRAIAKRLAKEGAKVVLV-DRSEEKLEAVAKEL-GALGGKALFIQG  56

Query  80   NVGDWESVQKLVADVIAEFGQIDAFIANAGRTASAGILDGSVNDWAEVIQTDLTGTFYCA  139
            +V D   V+ LV   +   G++D  + NAG T      + S  DW  VI  +LTG F   
Sbjct  57   DVTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLT  116

Query  140  KAVGPHFKERGKGSFVITSSMSGHIANYPQEQTSYNVAKAGCIHFAKSLANEWRDFA-RV  198
            +AV P   +   G  V  SS++G +       ++Y+ +KA  I F +SLA E      RV
Sbjct  117  RAVLPAMIKGSGGRIVNISSVAGLVPYP--GGSAYSASKAAVIGFTRSLALELAPHGIRV  174

Query  199  NSISPGYIDTGL  210
            N+++PG +DT +
Sbjct  175  NAVAPGGVDTDM  186



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00013006

Length=494


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00013007

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00013008

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429765 pfam07976, Phe_hydrox_dim, Phenol hydroxylase, C-termi...  168     1e-51
CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  116     5e-30


>CDD:429765 pfam07976, Phe_hydrox_dim, Phenol hydroxylase, C-terminal dimerization 
domain.  Phenol hydroxylase acts a homodimer, to hydroxylates 
phenol to catechol or similar product. The enzyme 
is comprised of three domains. The first two domains from 
the active site. The third domain, this domain, is involved 
in forming the dimerization interface. The domain adopts a thioredoxin-like 
fold.
Length=166

 Score = 168 bits (429),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 61/185 (33%), Positives = 86/185 (46%), Gaps = 29/185 (16%)

Query  182  FTSGYGVAYKPNVFNWSPSHPAQSPLFDIPGIKLTPGRAFTPTTVTRLADANFVHLEQEI  241
            FTSG GV Y P++     SH   +         L  GR F    V R ADAN VHL+ E+
Sbjct  1    FTSGVGVDYGPSILVAGTSHQNLAS-------GLPVGRRFPSAKVVRQADANPVHLQDEL  53

Query  242  PANGAFRIFIFAGKQAN--TKKAITDFGANLEKERSFLSSYRRIDEISFFERHLPHSKLF  299
            P++G FRI +FAG  ++   K  +      L    SFLS Y                 +F
Sbjct  54   PSDGRFRILVFAGDISDPAQKSRLEALADYLSSSSSFLSRYTPAGA--------DIDSVF  105

Query  300  SICLIYAAQKNEVDVEAIPQILR--------DYHHHIYADDIPDVRVPLAKFAAHEKLGF  351
             + LI++A + EV++E +P++LR        DY   +Y DD            A+EK G 
Sbjct  106  DVLLIHSAPRTEVELEDLPEVLRPFDGKLGWDY-WKVYVDDESYHEG---GGDAYEKYGI  161

Query  352  DPEKG  356
            DP++G
Sbjct  162  DPKRG  166


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 116 bits (293),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 67/138 (49%), Gaps = 2/138 (1%)

Query  1    MVIPREDNMVRLYVQIASSSDPDFNPRKTATAEEVQEAAKKILKPYTLEWDRVEWYSVYP  60
            MV P        Y       +      +  T EE+++  + I+         + W S++ 
Sbjct  213  MVGPWRSAGRERYYVQVPWDEEVEERPEEFTDEELKQRLRSIVGIDLAL-VEILWKSIWG  271

Query  61   IGQGISERYTLDERIFMGGDACHTHSPKAGQGMNTAFHDALNLAWKLHAVESGLADRSIL  120
            +   ++ RY    R+F+ GDA H H P  GQG+NTA  DA NLAWKL AV  G A  S+L
Sbjct  272  VASRVATRYRKG-RVFLAGDAAHIHPPTGGQGLNTAIQDAFNLAWKLAAVLRGQAGESLL  330

Query  121  STYESERKDIAERLLAFD  138
             TY +ER  +A  ++ F 
Sbjct  331  DTYSAERLPVAWAVVDFA  348



Lambda      K        H        a         alpha
   0.318    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00013009

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00013010

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00013011

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00013012

Length=990
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460725 pfam02862, DDHD, DDHD domain. The DDHD domain is 180 r...  108     5e-27


>CDD:460725 pfam02862, DDHD, DDHD domain.  The DDHD domain is 180 residues 
long and contains four conserved residues that may form a 
metal binding site. The domain is named after these four residues. 
This pattern of conservation of metal binding residues 
is often seen in phosphoesterase domains. This domain is found 
in retinal degeneration B proteins, as well as a family 
of probable phospholipases. It has been shown that this domain 
is found in a longer C terminal region that binds to PYK2 
tyrosine kinase. These proteins have been called N-terminal 
domain-interacting receptor (Nir1, Nir2 and Nir3). This suggests 
that this region is involved in functionally important 
interactions in other members of this family.
Length=241

 Score = 108 bits (272),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 64/261 (25%), Positives = 88/261 (34%), Gaps = 87/261 (33%)

Query  770  FEFDTKNLFLCGSPVGFFLLLNKANLLPRRGRDKPGYEGEDRLRGVAGEADTYGCLAVDN  829
             +F+ +N FL GSP+G FL L  A      GR +  +               YG  A   
Sbjct  1    LDFEVENFFLLGSPLGLFLALRGAQ---IAGRSRSDH--------------IYGSPACKQ  43

Query  830  LYNIMHTTDPIAYRLNAAVDVDLANSLKVASIP--------------GTS----------  865
            LYNI H  DP+AYRL   +D   +N LK   IP              G +          
Sbjct  44   LYNIFHPYDPVAYRLEPLIDPAYSN-LKPVLIPYYKKRGLRHLELGEGLTRIGAAVGQSV  102

Query  866  SSFWESFGSVFRWSTS------------------------------------------TV  883
            S  W S  S    + S                                          T 
Sbjct  103  SGLWSSLSSGASLNRSLGLSDESSASSADSEQSHERSSEASSASESSLQAQSSSAPSSTS  162

Query  884  PAPIRPATLTKLPSNVEMETHDFTREEIAEKRMLLLNDNGQIDYFISGGGGPLNIQYLNM  943
             +              E E     + E  E ++  LN NG+IDY +    G L  QYL+ 
Sbjct  163  SSNGIKEIEETELDWSESER-KADKLEREEAKVRALNPNGRIDYVLQ--EGALESQYLSA  219

Query  944  LSAHSSYWILSDFVRFIVIEI  964
            L++H SYW   D   F++ ++
Sbjct  220  LTSHLSYWESEDVALFLLRQL  240



Lambda      K        H        a         alpha
   0.314    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1265793144


Query= TCONS_00013013

Length=990
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460725 pfam02862, DDHD, DDHD domain. The DDHD domain is 180 r...  108     5e-27


>CDD:460725 pfam02862, DDHD, DDHD domain.  The DDHD domain is 180 residues 
long and contains four conserved residues that may form a 
metal binding site. The domain is named after these four residues. 
This pattern of conservation of metal binding residues 
is often seen in phosphoesterase domains. This domain is found 
in retinal degeneration B proteins, as well as a family 
of probable phospholipases. It has been shown that this domain 
is found in a longer C terminal region that binds to PYK2 
tyrosine kinase. These proteins have been called N-terminal 
domain-interacting receptor (Nir1, Nir2 and Nir3). This suggests 
that this region is involved in functionally important 
interactions in other members of this family.
Length=241

 Score = 108 bits (272),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 64/261 (25%), Positives = 88/261 (34%), Gaps = 87/261 (33%)

Query  770  FEFDTKNLFLCGSPVGFFLLLNKANLLPRRGRDKPGYEGEDRLRGVAGEADTYGCLAVDN  829
             +F+ +N FL GSP+G FL L  A      GR +  +               YG  A   
Sbjct  1    LDFEVENFFLLGSPLGLFLALRGAQ---IAGRSRSDH--------------IYGSPACKQ  43

Query  830  LYNIMHTTDPIAYRLNAAVDVDLANSLKVASIP--------------GTS----------  865
            LYNI H  DP+AYRL   +D   +N LK   IP              G +          
Sbjct  44   LYNIFHPYDPVAYRLEPLIDPAYSN-LKPVLIPYYKKRGLRHLELGEGLTRIGAAVGQSV  102

Query  866  SSFWESFGSVFRWSTS------------------------------------------TV  883
            S  W S  S    + S                                          T 
Sbjct  103  SGLWSSLSSGASLNRSLGLSDESSASSADSEQSHERSSEASSASESSLQAQSSSAPSSTS  162

Query  884  PAPIRPATLTKLPSNVEMETHDFTREEIAEKRMLLLNDNGQIDYFISGGGGPLNIQYLNM  943
             +              E E     + E  E ++  LN NG+IDY +    G L  QYL+ 
Sbjct  163  SSNGIKEIEETELDWSESER-KADKLEREEAKVRALNPNGRIDYVLQ--EGALESQYLSA  219

Query  944  LSAHSSYWILSDFVRFIVIEI  964
            L++H SYW   D   F++ ++
Sbjct  220  LTSHLSYWESEDVALFLLRQL  240



Lambda      K        H        a         alpha
   0.314    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1265793144


Query= TCONS_00013014

Length=421


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00013015

Length=808


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1038978528


Query= TCONS_00013017

Length=747
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460725 pfam02862, DDHD, DDHD domain. The DDHD domain is 180 r...  110     1e-27


>CDD:460725 pfam02862, DDHD, DDHD domain.  The DDHD domain is 180 residues 
long and contains four conserved residues that may form a 
metal binding site. The domain is named after these four residues. 
This pattern of conservation of metal binding residues 
is often seen in phosphoesterase domains. This domain is found 
in retinal degeneration B proteins, as well as a family 
of probable phospholipases. It has been shown that this domain 
is found in a longer C terminal region that binds to PYK2 
tyrosine kinase. These proteins have been called N-terminal 
domain-interacting receptor (Nir1, Nir2 and Nir3). This suggests 
that this region is involved in functionally important 
interactions in other members of this family.
Length=241

 Score = 110 bits (276),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 64/261 (25%), Positives = 88/261 (34%), Gaps = 87/261 (33%)

Query  527  FEFDTKNLFLCGSPVGFFLLLNKANLLPRRGRDKPGYEGEDRLRGVAGEADTYGCLAVDN  586
             +F+ +N FL GSP+G FL L  A      GR +  +               YG  A   
Sbjct  1    LDFEVENFFLLGSPLGLFLALRGAQ---IAGRSRSDH--------------IYGSPACKQ  43

Query  587  LYNIMHTTDPIAYRLNAAVDVDLANSLKVASIP--------------GTS----------  622
            LYNI H  DP+AYRL   +D   +N LK   IP              G +          
Sbjct  44   LYNIFHPYDPVAYRLEPLIDPAYSN-LKPVLIPYYKKRGLRHLELGEGLTRIGAAVGQSV  102

Query  623  SSFWESFGSVFRWSTS------------------------------------------TV  640
            S  W S  S    + S                                          T 
Sbjct  103  SGLWSSLSSGASLNRSLGLSDESSASSADSEQSHERSSEASSASESSLQAQSSSAPSSTS  162

Query  641  PAPIRPATLTKLPSNVEMETHDFTREEIAEKRMLLLNDNGQIDYFISGGGGPLNIQYLNM  700
             +              E E     + E  E ++  LN NG+IDY +    G L  QYL+ 
Sbjct  163  SSNGIKEIEETELDWSESER-KADKLEREEAKVRALNPNGRIDYVLQ--EGALESQYLSA  219

Query  701  LSAHSSYWILSDFVRFIVIEI  721
            L++H SYW   D   F++ ++
Sbjct  220  LTSHLSYWESEDVALFLLRQL  240



Lambda      K        H        a         alpha
   0.316    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 950214256


Query= TCONS_00018598

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460725 pfam02862, DDHD, DDHD domain. The DDHD domain is 180 r...  111     4e-28


>CDD:460725 pfam02862, DDHD, DDHD domain.  The DDHD domain is 180 residues 
long and contains four conserved residues that may form a 
metal binding site. The domain is named after these four residues. 
This pattern of conservation of metal binding residues 
is often seen in phosphoesterase domains. This domain is found 
in retinal degeneration B proteins, as well as a family 
of probable phospholipases. It has been shown that this domain 
is found in a longer C terminal region that binds to PYK2 
tyrosine kinase. These proteins have been called N-terminal 
domain-interacting receptor (Nir1, Nir2 and Nir3). This suggests 
that this region is involved in functionally important 
interactions in other members of this family.
Length=241

 Score = 111 bits (279),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 64/261 (25%), Positives = 88/261 (34%), Gaps = 87/261 (33%)

Query  410  FEFDTKNLFLCGSPVGFFLLLNKANLLPRRGRDKPGYEGEDRLRGVAGEADTYGCLAVDN  469
             +F+ +N FL GSP+G FL L  A      GR +  +               YG  A   
Sbjct  1    LDFEVENFFLLGSPLGLFLALRGAQ---IAGRSRSDH--------------IYGSPACKQ  43

Query  470  LYNIMHTTDPIAYRLNAAVDVDLANSLKVASIP--------------GTS----------  505
            LYNI H  DP+AYRL   +D   +N LK   IP              G +          
Sbjct  44   LYNIFHPYDPVAYRLEPLIDPAYSN-LKPVLIPYYKKRGLRHLELGEGLTRIGAAVGQSV  102

Query  506  SSFWESFGSVFRWSTS------------------------------------------TV  523
            S  W S  S    + S                                          T 
Sbjct  103  SGLWSSLSSGASLNRSLGLSDESSASSADSEQSHERSSEASSASESSLQAQSSSAPSSTS  162

Query  524  PAPIRPATLTKLPSNVEMETHDFTREEIAEKRMLLLNDNGQIDYFISGGGGPLNIQYLNM  583
             +              E E     + E  E ++  LN NG+IDY +    G L  QYL+ 
Sbjct  163  SSNGIKEIEETELDWSESER-KADKLEREEAKVRALNPNGRIDYVLQ--EGALESQYLSA  219

Query  584  LSAHSSYWILSDFVRFIVIEI  604
            L++H SYW   D   F++ ++
Sbjct  220  LTSHLSYWESEDVALFLLRQL  240



Lambda      K        H        a         alpha
   0.318    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00013018

Length=172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  206     1e-69
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  124     8e-38


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 206 bits (526),  Expect = 1e-69, Method: Composition-based stats.
 Identities = 66/142 (46%), Positives = 98/142 (69%), Gaps = 0/142 (0%)

Query  1    MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY  60
              + F   Y  TIG+DF +KT+ ++ +TV+LQ+WDTAGQERFR+L P Y R +   ++VY
Sbjct  20   TQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRALRPLYYRGADGFLLVY  79

Query  61   DISNAKSFQNTRKWIDDVRGERGNDVIIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFI  120
            DI++  SF+N +KW++++      +V IVLVGNK DL D+R V+T +GE  AK+ GL F+
Sbjct  80   DITSRDSFENVKKWVEEILRHADENVPIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFM  139

Query  121  ETSAKVGHNVKQLFRRIAQALP  142
            ETSAK   NV++ F  +A+ + 
Sbjct  140  ETSAKTNENVEEAFEELAREIL  161


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 124 bits (313),  Expect = 8e-38, Method: Composition-based stats.
 Identities = 43/99 (43%), Positives = 67/99 (68%), Gaps = 7/99 (7%)

Query  1    MYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTAGQERFRSLIPSYIRDSSVAV  57
            + D+FD  Y++TIG+DF +KT+   D   + ++L +WDTAGQERFRSL P Y R ++ A+
Sbjct  20   VDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAGQERFRSLHPFYYRGAAAAL  79

Query  58   VVYDISNAKSFQNTRKWIDDVRGERGNDVIIVLVGNKTD  96
            +VYD    ++F N + W+ +++   GN   ++LVGNK D
Sbjct  80   LVYDS---RTFSNLKYWLRELKKYAGNS-PVILVGNKID  114



Lambda      K        H        a         alpha
   0.316    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00013023

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430069 pfam08552, Kei1, Inositolphosphorylceramide synthase s...  274     8e-94


>CDD:430069 pfam08552, Kei1, Inositolphosphorylceramide synthase subunit 
Kei1.  Kei1 is a subunit of Saccharomyces cerevisiae inositol 
phosphorylceramide (IPC) synthase. It is localized to the 
Golgi and is cleaved by the late Golgi processing endopeptidase 
Kex2. Kei1 is essential for both the activity and the Golgi 
localization of IPC synthase.
Length=181

 Score = 274 bits (704),  Expect = 8e-94, Method: Composition-based stats.
 Identities = 112/186 (60%), Positives = 134/186 (72%), Gaps = 5/186 (3%)

Query  15   TFLYVMSLETGASLITLSLLLNKISGLYGLLALLTGYHLSPVQLSMYLYSLIALGLTAYL  74
            +FL  MSL+TG  LI L  LLNK+SG+YGLLAL TGY LS +QLSMY+YSL+AL L A+ 
Sbjct  1    SFLGFMSLQTGVELILLFALLNKVSGVYGLLALFTGYPLSFLQLSMYIYSLLALVLLAWG  60

Query  75   FPHIRKQSPLQCLALAWLYLLDTVINAAYTAAFGVTWFLVISQHYDNGTAKGPGSDTISQ  134
             PHIRKQSPLQCLALAWLYL+DTVIN AYTAAF VTWFLV++ H  +G     GS T   
Sbjct  61   LPHIRKQSPLQCLALAWLYLIDTVINTAYTAAFAVTWFLVLAPH--DGRRSASGSATQED  118

Query  135  TAGFTNPKYSSSSTNANSARSPDGLTNAVTQPESFQSIVFICLLWIIRIYFVFVMLAFAR  194
            TAGFT+PK    +  + +A +   L +AV Q ES  SI  I LLW++RIYF  V+ +FAR
Sbjct  119  TAGFTSPKA---AGGSLTAAARAALASAVWQQESAFSIAIIVLLWLVRIYFALVVYSFAR  175

Query  195  QKLRLY  200
            Q LR Y
Sbjct  176  QLLRQY  181



Lambda      K        H        a         alpha
   0.321    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00013019

Length=172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  206     1e-69
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  124     8e-38


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 206 bits (526),  Expect = 1e-69, Method: Composition-based stats.
 Identities = 66/142 (46%), Positives = 98/142 (69%), Gaps = 0/142 (0%)

Query  1    MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY  60
              + F   Y  TIG+DF +KT+ ++ +TV+LQ+WDTAGQERFR+L P Y R +   ++VY
Sbjct  20   TQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRALRPLYYRGADGFLLVY  79

Query  61   DISNAKSFQNTRKWIDDVRGERGNDVIIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFI  120
            DI++  SF+N +KW++++      +V IVLVGNK DL D+R V+T +GE  AK+ GL F+
Sbjct  80   DITSRDSFENVKKWVEEILRHADENVPIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFM  139

Query  121  ETSAKVGHNVKQLFRRIAQALP  142
            ETSAK   NV++ F  +A+ + 
Sbjct  140  ETSAKTNENVEEAFEELAREIL  161


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 124 bits (313),  Expect = 8e-38, Method: Composition-based stats.
 Identities = 43/99 (43%), Positives = 67/99 (68%), Gaps = 7/99 (7%)

Query  1    MYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTAGQERFRSLIPSYIRDSSVAV  57
            + D+FD  Y++TIG+DF +KT+   D   + ++L +WDTAGQERFRSL P Y R ++ A+
Sbjct  20   VDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAGQERFRSLHPFYYRGAAAAL  79

Query  58   VVYDISNAKSFQNTRKWIDDVRGERGNDVIIVLVGNKTD  96
            +VYD    ++F N + W+ +++   GN   ++LVGNK D
Sbjct  80   LVYDS---RTFSNLKYWLRELKKYAGNS-PVILVGNKID  114



Lambda      K        H        a         alpha
   0.316    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00018599

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  239     4e-81
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  161     7e-51
CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  68.4    1e-14


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 239 bits (613),  Expect = 4e-81, Method: Composition-based stats.
 Identities = 77/161 (48%), Positives = 113/161 (70%), Gaps = 0/161 (0%)

Query  17   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER  76
            KLV +G+  VGK+SL+ RF  + F   Y  TIG+DF +KT+ ++ +TV+LQ+WDTAGQER
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  77   FRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDVIIVLVGNKTDLNDKR  136
            FR+L P Y R +   ++VYDI++  SF+N +KW++++      +V IVLVGNK DL D+R
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVKKWVEEILRHADENVPIVLVGNKCDLEDQR  120

Query  137  EVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALP  177
             V+T +GE  AK+ GL F+ETSAK   NV++ F  +A+ + 
Sbjct  121  VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREIL  161


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 161 bits (409),  Expect = 7e-51, Method: Composition-based stats.
 Identities = 55/118 (47%), Positives = 82/118 (69%), Gaps = 7/118 (6%)

Query  17   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTAG  73
            K+V LG+  VGKTSL+ RF+ D+FD  Y++TIG+DF +KT+   D   + ++L +WDTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  74   QERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDVIIVLVGNKTD  131
            QERFRSL P Y R ++ A++VYD    ++F N + W+ +++   GN   ++LVGNK D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDS---RTFSNLKYWLRELKKYAGNS-PVILVGNKID  114


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 68.4 bits (168),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 9/165 (5%)

Query  16   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE  75
             +++ LG  + GKT+++ +        T   TIG  F  +T  +  + V+  +WD  GQE
Sbjct  1    MRILILGLDNAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VTYKNVKFTVWDVGGQE  55

Query  76   RFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGN-DVIIVLVGNKTDLND  134
              R L  +Y  ++   + V D ++    +  ++ +  +  E    D  ++++ NK DL  
Sbjct  56   SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPG  115

Query  135  ---KREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQAL  176
               + E+    G  E K         SA  G  + +    ++  +
Sbjct  116  AMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI  160



Lambda      K        H        a         alpha
   0.321    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00013021

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  238     1e-81
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  160     1e-51
CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  68.0    4e-15


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 238 bits (609),  Expect = 1e-81, Method: Composition-based stats.
 Identities = 77/161 (48%), Positives = 113/161 (70%), Gaps = 0/161 (0%)

Query  17   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER  76
            KLV +G+  VGK+SL+ RF  + F   Y  TIG+DF +KT+ ++ +TV+LQ+WDTAGQER
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  77   FRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDVIIVLVGNKTDLNDKR  136
            FR+L P Y R +   ++VYDI++  SF+N +KW++++      +V IVLVGNK DL D+R
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVKKWVEEILRHADENVPIVLVGNKCDLEDQR  120

Query  137  EVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALP  177
             V+T +GE  AK+ GL F+ETSAK   NV++ F  +A+ + 
Sbjct  121  VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREIL  161


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 160 bits (408),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 55/118 (47%), Positives = 82/118 (69%), Gaps = 7/118 (6%)

Query  17   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTAG  73
            K+V LG+  VGKTSL+ RF+ D+FD  Y++TIG+DF +KT+   D   + ++L +WDTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  74   QERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDVIIVLVGNKTD  131
            QERFRSL P Y R ++ A++VYD    ++F N + W+ +++   GN   ++LVGNK D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDS---RTFSNLKYWLRELKKYAGNS-PVILVGNKID  114


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 68.0 bits (167),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 9/165 (5%)

Query  16   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE  75
             +++ LG  + GKT+++ +        T   TIG  F  +T  +  + V+  +WD  GQE
Sbjct  1    MRILILGLDNAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VTYKNVKFTVWDVGGQE  55

Query  76   RFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGN-DVIIVLVGNKTDLND  134
              R L  +Y  ++   + V D ++    +  ++ +  +  E    D  ++++ NK DL  
Sbjct  56   SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPG  115

Query  135  ---KREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQAL  176
               + E+    G  E K         SA  G  + +    ++  +
Sbjct  116  AMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI  160



Lambda      K        H        a         alpha
   0.316    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00013022

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  227     2e-77
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  145     5e-46
CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  64.6    6e-14


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 227 bits (580),  Expect = 2e-77, Method: Composition-based stats.
 Identities = 74/161 (46%), Positives = 110/161 (68%), Gaps = 0/161 (0%)

Query  17   KCVFLGEQSGTKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER  76
            K V +G+    K+SL+ RF  + F   Y  TIG+DF +KT+ ++ +TV+LQ+WDTAGQER
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  77   FRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDVIIVLVGNKTDLNDKR  136
            FR+L P Y R +   ++VYDI++  SF+N +KW++++      +V IVLVGNK DL D+R
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVKKWVEEILRHADENVPIVLVGNKCDLEDQR  120

Query  137  EVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALP  177
             V+T +GE  AK+ GL F+ETSAK   NV++ F  +A+ + 
Sbjct  121  VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREIL  161


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 145 bits (369),  Expect = 5e-46, Method: Composition-based stats.
 Identities = 53/118 (45%), Positives = 79/118 (67%), Gaps = 7/118 (6%)

Query  17   KCVFLGEQSGTKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTAG  73
            K V LG+    KTSL+ RF+ D+FD  Y++TIG+DF +KT+   D   + ++L +WDTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  74   QERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDVIIVLVGNKTD  131
            QERFRSL P Y R ++ A++VYD    ++F N + W+ +++   GN   ++LVGNK D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDS---RTFSNLKYWLRELKKYAGNS-PVILVGNKID  114


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 64.6 bits (158),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 34/165 (21%), Positives = 68/165 (41%), Gaps = 9/165 (5%)

Query  16   FKCVFLGEQSGTKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE  75
             + + LG  +  KT+++ +        T   TIG  F  +T  +  + V+  +WD  GQE
Sbjct  1    MRILILGLDNAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VTYKNVKFTVWDVGGQE  55

Query  76   RFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGN-DVIIVLVGNKTDLND  134
              R L  +Y  ++   + V D ++    +  ++ +  +  E    D  ++++ NK DL  
Sbjct  56   SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPG  115

Query  135  ---KREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQAL  176
               + E+    G  E K         SA  G  + +    ++  +
Sbjct  116  AMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI  160



Lambda      K        H        a         alpha
   0.317    0.133    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00013024

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  237     1e-81
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  159     1e-51
CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  67.6    4e-15


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 237 bits (608),  Expect = 1e-81, Method: Composition-based stats.
 Identities = 77/161 (48%), Positives = 113/161 (70%), Gaps = 0/161 (0%)

Query  17   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER  76
            KLV +G+  VGK+SL+ RF  + F   Y  TIG+DF +KT+ ++ +TV+LQ+WDTAGQER
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  77   FRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDVIIVLVGNKTDLNDKR  136
            FR+L P Y R +   ++VYDI++  SF+N +KW++++      +V IVLVGNK DL D+R
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVKKWVEEILRHADENVPIVLVGNKCDLEDQR  120

Query  137  EVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALP  177
             V+T +GE  AK+ GL F+ETSAK   NV++ F  +A+ + 
Sbjct  121  VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREIL  161


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 159 bits (406),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 55/118 (47%), Positives = 82/118 (69%), Gaps = 7/118 (6%)

Query  17   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTAG  73
            K+V LG+  VGKTSL+ RF+ D+FD  Y++TIG+DF +KT+   D   + ++L +WDTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  74   QERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDVIIVLVGNKTD  131
            QERFRSL P Y R ++ A++VYD    ++F N + W+ +++   GN   ++LVGNK D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDS---RTFSNLKYWLRELKKYAGNS-PVILVGNKID  114


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 67.6 bits (166),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 9/165 (5%)

Query  16   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE  75
             +++ LG  + GKT+++ +        T   TIG  F  +T  +  + V+  +WD  GQE
Sbjct  1    MRILILGLDNAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VTYKNVKFTVWDVGGQE  55

Query  76   RFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGN-DVIIVLVGNKTDLND  134
              R L  +Y  ++   + V D ++    +  ++ +  +  E    D  ++++ NK DL  
Sbjct  56   SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPG  115

Query  135  ---KREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQAL  176
               + E+    G  E K         SA  G  + +    ++  +
Sbjct  116  AMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI  160



Lambda      K        H        a         alpha
   0.316    0.132    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00013025

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  238     1e-81
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  160     1e-51
CDD:459636 pfam00025, Arf, ADP-ribosylation factor family. Pfam c...  68.0    4e-15


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 238 bits (609),  Expect = 1e-81, Method: Composition-based stats.
 Identities = 77/161 (48%), Positives = 113/161 (70%), Gaps = 0/161 (0%)

Query  17   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER  76
            KLV +G+  VGK+SL+ RF  + F   Y  TIG+DF +KT+ ++ +TV+LQ+WDTAGQER
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  77   FRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDVIIVLVGNKTDLNDKR  136
            FR+L P Y R +   ++VYDI++  SF+N +KW++++      +V IVLVGNK DL D+R
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVKKWVEEILRHADENVPIVLVGNKCDLEDQR  120

Query  137  EVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALP  177
             V+T +GE  AK+ GL F+ETSAK   NV++ F  +A+ + 
Sbjct  121  VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREIL  161


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 160 bits (408),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 55/118 (47%), Positives = 82/118 (69%), Gaps = 7/118 (6%)

Query  17   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDTAG  73
            K+V LG+  VGKTSL+ RF+ D+FD  Y++TIG+DF +KT+   D   + ++L +WDTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  74   QERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDVIIVLVGNKTD  131
            QERFRSL P Y R ++ A++VYD    ++F N + W+ +++   GN   ++LVGNK D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDS---RTFSNLKYWLRELKKYAGNS-PVILVGNKID  114


>CDD:459636 pfam00025, Arf, ADP-ribosylation factor family.  Pfam combines 
a number of different Prosite families together.
Length=160

 Score = 68.0 bits (167),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 9/165 (5%)

Query  16   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE  75
             +++ LG  + GKT+++ +        T   TIG  F  +T  +  + V+  +WD  GQE
Sbjct  1    MRILILGLDNAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VTYKNVKFTVWDVGGQE  55

Query  76   RFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGN-DVIIVLVGNKTDLND  134
              R L  +Y  ++   + V D ++    +  ++ +  +  E    D  ++++ NK DL  
Sbjct  56   SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPG  115

Query  135  ---KREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQAL  176
               + E+    G  E K         SA  G  + +    ++  +
Sbjct  116  AMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI  160



Lambda      K        H        a         alpha
   0.316    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00013027

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430069 pfam08552, Kei1, Inositolphosphorylceramide synthase s...  274     8e-94


>CDD:430069 pfam08552, Kei1, Inositolphosphorylceramide synthase subunit 
Kei1.  Kei1 is a subunit of Saccharomyces cerevisiae inositol 
phosphorylceramide (IPC) synthase. It is localized to the 
Golgi and is cleaved by the late Golgi processing endopeptidase 
Kex2. Kei1 is essential for both the activity and the Golgi 
localization of IPC synthase.
Length=181

 Score = 274 bits (704),  Expect = 8e-94, Method: Composition-based stats.
 Identities = 112/186 (60%), Positives = 134/186 (72%), Gaps = 5/186 (3%)

Query  15   TFLYVMSLETGASLITLSLLLNKISGLYGLLALLTGYHLSPVQLSMYLYSLIALGLTAYL  74
            +FL  MSL+TG  LI L  LLNK+SG+YGLLAL TGY LS +QLSMY+YSL+AL L A+ 
Sbjct  1    SFLGFMSLQTGVELILLFALLNKVSGVYGLLALFTGYPLSFLQLSMYIYSLLALVLLAWG  60

Query  75   FPHIRKQSPLQCLALAWLYLLDTVINAAYTAAFGVTWFLVISQHYDNGTAKGPGSDTISQ  134
             PHIRKQSPLQCLALAWLYL+DTVIN AYTAAF VTWFLV++ H  +G     GS T   
Sbjct  61   LPHIRKQSPLQCLALAWLYLIDTVINTAYTAAFAVTWFLVLAPH--DGRRSASGSATQED  118

Query  135  TAGFTNPKYSSSSTNANSARSPDGLTNAVTQPESFQSIVFICLLWIIRIYFVFVMLAFAR  194
            TAGFT+PK    +  + +A +   L +AV Q ES  SI  I LLW++RIYF  V+ +FAR
Sbjct  119  TAGFTSPKA---AGGSLTAAARAALASAVWQQESAFSIAIIVLLWLVRIYFALVVYSFAR  175

Query  195  QKLRLY  200
            Q LR Y
Sbjct  176  QLLRQY  181



Lambda      K        H        a         alpha
   0.321    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00013028

Length=1325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe...  163     5e-47
CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin                        110     8e-29
CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase fer...  66.4    4e-14


>CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe-4S domain. 
 Sulphite and nitrite reductases are vital in the biosynthetic 
assimilation of sulphur and nitrogen, respectfully. 
They are also both important for the dissimilation of oxidized 
anions for energy transduction.
Length=153

 Score = 163 bits (415),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 59/160 (37%), Positives = 81/160 (51%), Gaps = 10/160 (6%)

Query  1111  AKKISDHLLPATTAYHEIWLKDDDDNKVQVAGDAVQDHEPLYGPTYLPRKFKITIAIPPH  1170
                 +  L P      E  L     +   +A     + EP YG  YLPRKFKI ++  P+
Sbjct  2     DNVRNVTLCPGAGLCPEELL-----DTRPLAKAIEDEFEPDYGFPYLPRKFKIAVSGCPN  56

Query  1171  NDTDVYAHDIGLIAIKGADGHLEGFNVLAGGGMGTTHNNKKTYPQTGRMFGYVPADQAHI  1230
             N    +A+DIG + +   DG   GFN+L GGG+G T     T         +VP +    
Sbjct  57    NCVAAHANDIGFVGVWK-DGGEIGFNILVGGGLGRTPGAAATLKV----VPFVPEEDVLE  111

Query  1231  VCEKIMLVQRDFGDRKNRKHARLKYTIDDMGVETFKGKVE  1270
             V E I+ V RD GDR+NRK  RLKY I+ +G+E F+ +VE
Sbjct  112   VIEAILEVYRDHGDRENRKKERLKYLIERLGLEKFREEVE  151


>CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin.  
Length=142

 Score = 110 bits (278),  Expect = 8e-29, Method: Composition-based stats.
 Identities = 44/149 (30%), Positives = 73/149 (49%), Gaps = 13/149 (9%)

Query  789  ILFASDGGNAQTLAKRLGNRGRARGLKTMVIAMDDYP--AEDLATEENVVFITSTAGQGE  846
            I + S  GN + LA+ +       G +  V+ +DD      ++  E+ ++ + ST G+GE
Sbjct  1    IFYGSQTGNTEKLAEAIAEGLGEAGFEVDVVDLDDVDETLSEIEEEDLLLVVVSTWGEGE  60

Query  847  FPQNGRSLWEVIKNSGDL---DLSTIKYSVFGLGDSHYWPRKEDKIYYNKPAKDLDARIA  903
             P N +   + +   G L   DLS +KY+VFGLGDS Y         +   AK LD +++
Sbjct  61   PPDNAKPFVDWLLLFGTLEDGDLSGLKYAVFGLGDSGYEG-------FCGAAKKLDEKLS  113

Query  904  FLGGRKLTDIGLGDDQD-PDAYQTGYSEW  931
             LG  ++  +G GD+    D  +  +  W
Sbjct  114  ELGASRVGPLGEGDEDPQEDGLEEAFEAW  142


>CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase ferredoxin-like 
half domain.  Sulfite and Nitrite reductases are key to 
both biosynthetic assimilation of sulfur and nitrogen and 
dissimilation of oxidized anions for energy transduction. Two 
copies of this repeat are found in Nitrite and Sulfite reductases 
and form a single structural domain.
Length=67

 Score = 66.4 bits (163),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  1018  FMIRCRLPGGVATPLQWIQMDEISSAYGNETMKLTTRQTFQFHGVIKRNLRSAMRAINKA  1077
             +M+R R+PGG  T  Q   + +I+  YG+  ++LTTRQ  + HGV + +L   +  + +A
Sbjct  8     YMVRVRVPGGRLTAEQLRALADIAEKYGDGEIRLTTRQNLELHGVPEEDLPELLEELAEA  67



Lambda      K        H        a         alpha
   0.315    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0700    0.140     1.90     42.6     43.6 

Effective search space used: 1689088200


Query= TCONS_00018600

Length=1532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe...  163     5e-47
CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin                        110     1e-28
CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase fer...  66.4    5e-14


>CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe-4S domain. 
 Sulphite and nitrite reductases are vital in the biosynthetic 
assimilation of sulphur and nitrogen, respectfully. 
They are also both important for the dissimilation of oxidized 
anions for energy transduction.
Length=153

 Score = 163 bits (415),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 59/160 (37%), Positives = 81/160 (51%), Gaps = 10/160 (6%)

Query  1111  AKKISDHLLPATTAYHEIWLKDDDDNKVQVAGDAVQDHEPLYGPTYLPRKFKITIAIPPH  1170
                 +  L P      E  L     +   +A     + EP YG  YLPRKFKI ++  P+
Sbjct  2     DNVRNVTLCPGAGLCPEELL-----DTRPLAKAIEDEFEPDYGFPYLPRKFKIAVSGCPN  56

Query  1171  NDTDVYAHDIGLIAIKGADGHLEGFNVLAGGGMGTTHNNKKTYPQTGRMFGYVPADQAHI  1230
             N    +A+DIG + +   DG   GFN+L GGG+G T     T         +VP +    
Sbjct  57    NCVAAHANDIGFVGVWK-DGGEIGFNILVGGGLGRTPGAAATLKV----VPFVPEEDVLE  111

Query  1231  VCEKIMLVQRDFGDRKNRKHARLKYTIDDMGVETFKGKVE  1270
             V E I+ V RD GDR+NRK  RLKY I+ +G+E F+ +VE
Sbjct  112   VIEAILEVYRDHGDRENRKKERLKYLIERLGLEKFREEVE  151


>CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin.  
Length=142

 Score = 110 bits (278),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 44/149 (30%), Positives = 73/149 (49%), Gaps = 13/149 (9%)

Query  789  ILFASDGGNAQTLAKRLGNRGRARGLKTMVIAMDDYP--AEDLATEENVVFITSTAGQGE  846
            I + S  GN + LA+ +       G +  V+ +DD      ++  E+ ++ + ST G+GE
Sbjct  1    IFYGSQTGNTEKLAEAIAEGLGEAGFEVDVVDLDDVDETLSEIEEEDLLLVVVSTWGEGE  60

Query  847  FPQNGRSLWEVIKNSGDL---DLSTIKYSVFGLGDSHYWPRKEDKIYYNKPAKDLDARIA  903
             P N +   + +   G L   DLS +KY+VFGLGDS Y         +   AK LD +++
Sbjct  61   PPDNAKPFVDWLLLFGTLEDGDLSGLKYAVFGLGDSGYEG-------FCGAAKKLDEKLS  113

Query  904  FLGGRKLTDIGLGDDQD-PDAYQTGYSEW  931
             LG  ++  +G GD+    D  +  +  W
Sbjct  114  ELGASRVGPLGEGDEDPQEDGLEEAFEAW  142


>CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase ferredoxin-like 
half domain.  Sulfite and Nitrite reductases are key to 
both biosynthetic assimilation of sulfur and nitrogen and 
dissimilation of oxidized anions for energy transduction. Two 
copies of this repeat are found in Nitrite and Sulfite reductases 
and form a single structural domain.
Length=67

 Score = 66.4 bits (163),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  1018  FMIRCRLPGGVATPLQWIQMDEISSAYGNETMKLTTRQTFQFHGVIKRNLRSAMRAINKA  1077
             +M+R R+PGG  T  Q   + +I+  YG+  ++LTTRQ  + HGV + +L   +  + +A
Sbjct  8     YMVRVRVPGGRLTAEQLRALADIAEKYGDGEIRLTTRQNLELHGVPEEDLPELLEELAEA  67


 Score = 57.5 bits (140),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query  1298  KDEKGLNHFTFFIENGRVEDTAEFTMRSGLRELA-KLDKGEFRLTGNQHLILSNIKDEDL  1356
               + G       +  GR+  TAE  +R  L ++A K   GE RLT  Q+L L  + +EDL
Sbjct  2     PQKDGDYMVRVRVPGGRL--TAE-QLR-ALADIAEKYGDGEIRLTTRQNLELHGVPEEDL  57

Query  1357  PAVKEIMAKH  1366
             P + E +A+ 
Sbjct  58    PELLEELAEA  67



Lambda      K        H        a         alpha
   0.316    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1944526546


Query= TCONS_00018601

Length=1523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe...  163     5e-47
CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin                        110     1e-28
CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase fer...  66.4    5e-14


>CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe-4S domain. 
 Sulphite and nitrite reductases are vital in the biosynthetic 
assimilation of sulphur and nitrogen, respectfully. 
They are also both important for the dissimilation of oxidized 
anions for energy transduction.
Length=153

 Score = 163 bits (415),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 59/160 (37%), Positives = 81/160 (51%), Gaps = 10/160 (6%)

Query  1104  AKKISDHLLPATTAYHEIWLKDDDDNKVQVAGDAVQDHEPLYGPTYLPRKFKITIAIPPH  1163
                 +  L P      E  L     +   +A     + EP YG  YLPRKFKI ++  P+
Sbjct  2     DNVRNVTLCPGAGLCPEELL-----DTRPLAKAIEDEFEPDYGFPYLPRKFKIAVSGCPN  56

Query  1164  NDTDVYAHDIGLIAIKGADGHLEGFNVLAGGGMGTTHNNKKTYPQTGRMFGYVPADQAHI  1223
             N    +A+DIG + +   DG   GFN+L GGG+G T     T         +VP +    
Sbjct  57    NCVAAHANDIGFVGVWK-DGGEIGFNILVGGGLGRTPGAAATLKV----VPFVPEEDVLE  111

Query  1224  VCEKIMLVQRDFGDRKNRKHARLKYTIDDMGVETFKGKVE  1263
             V E I+ V RD GDR+NRK  RLKY I+ +G+E F+ +VE
Sbjct  112   VIEAILEVYRDHGDRENRKKERLKYLIERLGLEKFREEVE  151


>CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin.  
Length=142

 Score = 110 bits (277),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 44/149 (30%), Positives = 73/149 (49%), Gaps = 13/149 (9%)

Query  782  ILFASDGGNAQTLAKRLGNRGRARGLKTMVIAMDDYP--AEDLATEENVVFITSTAGQGE  839
            I + S  GN + LA+ +       G +  V+ +DD      ++  E+ ++ + ST G+GE
Sbjct  1    IFYGSQTGNTEKLAEAIAEGLGEAGFEVDVVDLDDVDETLSEIEEEDLLLVVVSTWGEGE  60

Query  840  FPQNGRSLWEVIKNSGDL---DLSTIKYSVFGLGDSHYWPRKEDKIYYNKPAKDLDARIA  896
             P N +   + +   G L   DLS +KY+VFGLGDS Y         +   AK LD +++
Sbjct  61   PPDNAKPFVDWLLLFGTLEDGDLSGLKYAVFGLGDSGYEG-------FCGAAKKLDEKLS  113

Query  897  FLGGRKLTDIGLGDDQD-PDAYQTGYSEW  924
             LG  ++  +G GD+    D  +  +  W
Sbjct  114  ELGASRVGPLGEGDEDPQEDGLEEAFEAW  142


>CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase ferredoxin-like 
half domain.  Sulfite and Nitrite reductases are key to 
both biosynthetic assimilation of sulfur and nitrogen and 
dissimilation of oxidized anions for energy transduction. Two 
copies of this repeat are found in Nitrite and Sulfite reductases 
and form a single structural domain.
Length=67

 Score = 66.4 bits (163),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  1011  FMIRCRLPGGVATPLQWIQMDEISSAYGNETMKLTTRQTFQFHGVIKRNLRSAMRAINKA  1070
             +M+R R+PGG  T  Q   + +I+  YG+  ++LTTRQ  + HGV + +L   +  + +A
Sbjct  8     YMVRVRVPGGRLTAEQLRALADIAEKYGDGEIRLTTRQNLELHGVPEEDLPELLEELAEA  67


 Score = 57.5 bits (140),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query  1291  KDEKGLNHFTFFIENGRVEDTAEFTMRSGLRELA-KLDKGEFRLTGNQHLILSNIKDEDL  1349
               + G       +  GR+  TAE  +R  L ++A K   GE RLT  Q+L L  + +EDL
Sbjct  2     PQKDGDYMVRVRVPGGRL--TAE-QLR-ALADIAEKYGDGEIRLTTRQNLELHGVPEEDL  57

Query  1350  PAVKEIMAKH  1359
             P + E +A+ 
Sbjct  58    PELLEELAEA  67



Lambda      K        H        a         alpha
   0.315    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1932313888


Query= TCONS_00013029

Length=1523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe...  163     5e-47
CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin                        110     1e-28
CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase fer...  66.4    5e-14


>CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe-4S domain. 
 Sulphite and nitrite reductases are vital in the biosynthetic 
assimilation of sulphur and nitrogen, respectfully. 
They are also both important for the dissimilation of oxidized 
anions for energy transduction.
Length=153

 Score = 163 bits (415),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 59/160 (37%), Positives = 81/160 (51%), Gaps = 10/160 (6%)

Query  1104  AKKISDHLLPATTAYHEIWLKDDDDNKVQVAGDAVQDHEPLYGPTYLPRKFKITIAIPPH  1163
                 +  L P      E  L     +   +A     + EP YG  YLPRKFKI ++  P+
Sbjct  2     DNVRNVTLCPGAGLCPEELL-----DTRPLAKAIEDEFEPDYGFPYLPRKFKIAVSGCPN  56

Query  1164  NDTDVYAHDIGLIAIKGADGHLEGFNVLAGGGMGTTHNNKKTYPQTGRMFGYVPADQAHI  1223
             N    +A+DIG + +   DG   GFN+L GGG+G T     T         +VP +    
Sbjct  57    NCVAAHANDIGFVGVWK-DGGEIGFNILVGGGLGRTPGAAATLKV----VPFVPEEDVLE  111

Query  1224  VCEKIMLVQRDFGDRKNRKHARLKYTIDDMGVETFKGKVE  1263
             V E I+ V RD GDR+NRK  RLKY I+ +G+E F+ +VE
Sbjct  112   VIEAILEVYRDHGDRENRKKERLKYLIERLGLEKFREEVE  151


>CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin.  
Length=142

 Score = 110 bits (277),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 44/149 (30%), Positives = 73/149 (49%), Gaps = 13/149 (9%)

Query  782  ILFASDGGNAQTLAKRLGNRGRARGLKTMVIAMDDYP--AEDLATEENVVFITSTAGQGE  839
            I + S  GN + LA+ +       G +  V+ +DD      ++  E+ ++ + ST G+GE
Sbjct  1    IFYGSQTGNTEKLAEAIAEGLGEAGFEVDVVDLDDVDETLSEIEEEDLLLVVVSTWGEGE  60

Query  840  FPQNGRSLWEVIKNSGDL---DLSTIKYSVFGLGDSHYWPRKEDKIYYNKPAKDLDARIA  896
             P N +   + +   G L   DLS +KY+VFGLGDS Y         +   AK LD +++
Sbjct  61   PPDNAKPFVDWLLLFGTLEDGDLSGLKYAVFGLGDSGYEG-------FCGAAKKLDEKLS  113

Query  897  FLGGRKLTDIGLGDDQD-PDAYQTGYSEW  924
             LG  ++  +G GD+    D  +  +  W
Sbjct  114  ELGASRVGPLGEGDEDPQEDGLEEAFEAW  142


>CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase ferredoxin-like 
half domain.  Sulfite and Nitrite reductases are key to 
both biosynthetic assimilation of sulfur and nitrogen and 
dissimilation of oxidized anions for energy transduction. Two 
copies of this repeat are found in Nitrite and Sulfite reductases 
and form a single structural domain.
Length=67

 Score = 66.4 bits (163),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  1011  FMIRCRLPGGVATPLQWIQMDEISSAYGNETMKLTTRQTFQFHGVIKRNLRSAMRAINKA  1070
             +M+R R+PGG  T  Q   + +I+  YG+  ++LTTRQ  + HGV + +L   +  + +A
Sbjct  8     YMVRVRVPGGRLTAEQLRALADIAEKYGDGEIRLTTRQNLELHGVPEEDLPELLEELAEA  67


 Score = 57.5 bits (140),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query  1291  KDEKGLNHFTFFIENGRVEDTAEFTMRSGLRELA-KLDKGEFRLTGNQHLILSNIKDEDL  1349
               + G       +  GR+  TAE  +R  L ++A K   GE RLT  Q+L L  + +EDL
Sbjct  2     PQKDGDYMVRVRVPGGRL--TAE-QLR-ALADIAEKYGDGEIRLTTRQNLELHGVPEEDL  57

Query  1350  PAVKEIMAKH  1359
             P + E +A+ 
Sbjct  58    PELLEELAEA  67



Lambda      K        H        a         alpha
   0.315    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1932313888


Query= TCONS_00013030

Length=1523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe...  163     5e-47
CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin                        110     1e-28
CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase fer...  66.4    5e-14


>CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe-4S domain. 
 Sulphite and nitrite reductases are vital in the biosynthetic 
assimilation of sulphur and nitrogen, respectfully. 
They are also both important for the dissimilation of oxidized 
anions for energy transduction.
Length=153

 Score = 163 bits (415),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 59/160 (37%), Positives = 81/160 (51%), Gaps = 10/160 (6%)

Query  1104  AKKISDHLLPATTAYHEIWLKDDDDNKVQVAGDAVQDHEPLYGPTYLPRKFKITIAIPPH  1163
                 +  L P      E  L     +   +A     + EP YG  YLPRKFKI ++  P+
Sbjct  2     DNVRNVTLCPGAGLCPEELL-----DTRPLAKAIEDEFEPDYGFPYLPRKFKIAVSGCPN  56

Query  1164  NDTDVYAHDIGLIAIKGADGHLEGFNVLAGGGMGTTHNNKKTYPQTGRMFGYVPADQAHI  1223
             N    +A+DIG + +   DG   GFN+L GGG+G T     T         +VP +    
Sbjct  57    NCVAAHANDIGFVGVWK-DGGEIGFNILVGGGLGRTPGAAATLKV----VPFVPEEDVLE  111

Query  1224  VCEKIMLVQRDFGDRKNRKHARLKYTIDDMGVETFKGKVE  1263
             V E I+ V RD GDR+NRK  RLKY I+ +G+E F+ +VE
Sbjct  112   VIEAILEVYRDHGDRENRKKERLKYLIERLGLEKFREEVE  151


>CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin.  
Length=142

 Score = 110 bits (277),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 44/149 (30%), Positives = 73/149 (49%), Gaps = 13/149 (9%)

Query  782  ILFASDGGNAQTLAKRLGNRGRARGLKTMVIAMDDYP--AEDLATEENVVFITSTAGQGE  839
            I + S  GN + LA+ +       G +  V+ +DD      ++  E+ ++ + ST G+GE
Sbjct  1    IFYGSQTGNTEKLAEAIAEGLGEAGFEVDVVDLDDVDETLSEIEEEDLLLVVVSTWGEGE  60

Query  840  FPQNGRSLWEVIKNSGDL---DLSTIKYSVFGLGDSHYWPRKEDKIYYNKPAKDLDARIA  896
             P N +   + +   G L   DLS +KY+VFGLGDS Y         +   AK LD +++
Sbjct  61   PPDNAKPFVDWLLLFGTLEDGDLSGLKYAVFGLGDSGYEG-------FCGAAKKLDEKLS  113

Query  897  FLGGRKLTDIGLGDDQD-PDAYQTGYSEW  924
             LG  ++  +G GD+    D  +  +  W
Sbjct  114  ELGASRVGPLGEGDEDPQEDGLEEAFEAW  142


>CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase ferredoxin-like 
half domain.  Sulfite and Nitrite reductases are key to 
both biosynthetic assimilation of sulfur and nitrogen and 
dissimilation of oxidized anions for energy transduction. Two 
copies of this repeat are found in Nitrite and Sulfite reductases 
and form a single structural domain.
Length=67

 Score = 66.4 bits (163),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  1011  FMIRCRLPGGVATPLQWIQMDEISSAYGNETMKLTTRQTFQFHGVIKRNLRSAMRAINKA  1070
             +M+R R+PGG  T  Q   + +I+  YG+  ++LTTRQ  + HGV + +L   +  + +A
Sbjct  8     YMVRVRVPGGRLTAEQLRALADIAEKYGDGEIRLTTRQNLELHGVPEEDLPELLEELAEA  67


 Score = 57.5 bits (140),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query  1291  KDEKGLNHFTFFIENGRVEDTAEFTMRSGLRELA-KLDKGEFRLTGNQHLILSNIKDEDL  1349
               + G       +  GR+  TAE  +R  L ++A K   GE RLT  Q+L L  + +EDL
Sbjct  2     PQKDGDYMVRVRVPGGRL--TAE-QLR-ALADIAEKYGDGEIRLTTRQNLELHGVPEEDL  57

Query  1350  PAVKEIMAKH  1359
             P + E +A+ 
Sbjct  58    PELLEELAEA  67



Lambda      K        H        a         alpha
   0.315    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1932313888


Query= TCONS_00013031

Length=1530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe...  163     5e-47
CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin                        110     1e-28
CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase fer...  66.4    5e-14


>CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe-4S domain. 
 Sulphite and nitrite reductases are vital in the biosynthetic 
assimilation of sulphur and nitrogen, respectfully. 
They are also both important for the dissimilation of oxidized 
anions for energy transduction.
Length=153

 Score = 163 bits (415),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 59/160 (37%), Positives = 81/160 (51%), Gaps = 10/160 (6%)

Query  1111  AKKISDHLLPATTAYHEIWLKDDDDNKVQVAGDAVQDHEPLYGPTYLPRKFKITIAIPPH  1170
                 +  L P      E  L     +   +A     + EP YG  YLPRKFKI ++  P+
Sbjct  2     DNVRNVTLCPGAGLCPEELL-----DTRPLAKAIEDEFEPDYGFPYLPRKFKIAVSGCPN  56

Query  1171  NDTDVYAHDIGLIAIKGADGHLEGFNVLAGGGMGTTHNNKKTYPQTGRMFGYVPADQAHI  1230
             N    +A+DIG + +   DG   GFN+L GGG+G T     T         +VP +    
Sbjct  57    NCVAAHANDIGFVGVWK-DGGEIGFNILVGGGLGRTPGAAATLKV----VPFVPEEDVLE  111

Query  1231  VCEKIMLVQRDFGDRKNRKHARLKYTIDDMGVETFKGKVE  1270
             V E I+ V RD GDR+NRK  RLKY I+ +G+E F+ +VE
Sbjct  112   VIEAILEVYRDHGDRENRKKERLKYLIERLGLEKFREEVE  151


>CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin.  
Length=142

 Score = 110 bits (277),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 44/149 (30%), Positives = 73/149 (49%), Gaps = 13/149 (9%)

Query  789  ILFASDGGNAQTLAKRLGNRGRARGLKTMVIAMDDYP--AEDLATEENVVFITSTAGQGE  846
            I + S  GN + LA+ +       G +  V+ +DD      ++  E+ ++ + ST G+GE
Sbjct  1    IFYGSQTGNTEKLAEAIAEGLGEAGFEVDVVDLDDVDETLSEIEEEDLLLVVVSTWGEGE  60

Query  847  FPQNGRSLWEVIKNSGDL---DLSTIKYSVFGLGDSHYWPRKEDKIYYNKPAKDLDARIA  903
             P N +   + +   G L   DLS +KY+VFGLGDS Y         +   AK LD +++
Sbjct  61   PPDNAKPFVDWLLLFGTLEDGDLSGLKYAVFGLGDSGYEG-------FCGAAKKLDEKLS  113

Query  904  FLGGRKLTDIGLGDDQD-PDAYQTGYSEW  931
             LG  ++  +G GD+    D  +  +  W
Sbjct  114  ELGASRVGPLGEGDEDPQEDGLEEAFEAW  142


>CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase ferredoxin-like 
half domain.  Sulfite and Nitrite reductases are key to 
both biosynthetic assimilation of sulfur and nitrogen and 
dissimilation of oxidized anions for energy transduction. Two 
copies of this repeat are found in Nitrite and Sulfite reductases 
and form a single structural domain.
Length=67

 Score = 66.4 bits (163),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  1018  FMIRCRLPGGVATPLQWIQMDEISSAYGNETMKLTTRQTFQFHGVIKRNLRSAMRAINKA  1077
             +M+R R+PGG  T  Q   + +I+  YG+  ++LTTRQ  + HGV + +L   +  + +A
Sbjct  8     YMVRVRVPGGRLTAEQLRALADIAEKYGDGEIRLTTRQNLELHGVPEEDLPELLEELAEA  67


 Score = 57.5 bits (140),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query  1298  KDEKGLNHFTFFIENGRVEDTAEFTMRSGLRELA-KLDKGEFRLTGNQHLILSNIKDEDL  1356
               + G       +  GR+  TAE  +R  L ++A K   GE RLT  Q+L L  + +EDL
Sbjct  2     PQKDGDYMVRVRVPGGRL--TAE-QLR-ALADIAEKYGDGEIRLTTRQNLELHGVPEEDL  57

Query  1357  PAVKEIMAKH  1366
             P + E +A+ 
Sbjct  58    PELLEELAEA  67



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1941812622


Query= TCONS_00013032

Length=1525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe...  163     5e-47
CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin                        110     1e-28
CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase fer...  66.4    5e-14


>CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe-4S domain. 
 Sulphite and nitrite reductases are vital in the biosynthetic 
assimilation of sulphur and nitrogen, respectfully. 
They are also both important for the dissimilation of oxidized 
anions for energy transduction.
Length=153

 Score = 163 bits (415),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 59/160 (37%), Positives = 81/160 (51%), Gaps = 10/160 (6%)

Query  1104  AKKISDHLLPATTAYHEIWLKDDDDNKVQVAGDAVQDHEPLYGPTYLPRKFKITIAIPPH  1163
                 +  L P      E  L     +   +A     + EP YG  YLPRKFKI ++  P+
Sbjct  2     DNVRNVTLCPGAGLCPEELL-----DTRPLAKAIEDEFEPDYGFPYLPRKFKIAVSGCPN  56

Query  1164  NDTDVYAHDIGLIAIKGADGHLEGFNVLAGGGMGTTHNNKKTYPQTGRMFGYVPADQAHI  1223
             N    +A+DIG + +   DG   GFN+L GGG+G T     T         +VP +    
Sbjct  57    NCVAAHANDIGFVGVWK-DGGEIGFNILVGGGLGRTPGAAATLKV----VPFVPEEDVLE  111

Query  1224  VCEKIMLVQRDFGDRKNRKHARLKYTIDDMGVETFKGKVE  1263
             V E I+ V RD GDR+NRK  RLKY I+ +G+E F+ +VE
Sbjct  112   VIEAILEVYRDHGDRENRKKERLKYLIERLGLEKFREEVE  151


>CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin.  
Length=142

 Score = 110 bits (278),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 44/149 (30%), Positives = 73/149 (49%), Gaps = 13/149 (9%)

Query  782  ILFASDGGNAQTLAKRLGNRGRARGLKTMVIAMDDYP--AEDLATEENVVFITSTAGQGE  839
            I + S  GN + LA+ +       G +  V+ +DD      ++  E+ ++ + ST G+GE
Sbjct  1    IFYGSQTGNTEKLAEAIAEGLGEAGFEVDVVDLDDVDETLSEIEEEDLLLVVVSTWGEGE  60

Query  840  FPQNGRSLWEVIKNSGDL---DLSTIKYSVFGLGDSHYWPRKEDKIYYNKPAKDLDARIA  896
             P N +   + +   G L   DLS +KY+VFGLGDS Y         +   AK LD +++
Sbjct  61   PPDNAKPFVDWLLLFGTLEDGDLSGLKYAVFGLGDSGYEG-------FCGAAKKLDEKLS  113

Query  897  FLGGRKLTDIGLGDDQD-PDAYQTGYSEW  924
             LG  ++  +G GD+    D  +  +  W
Sbjct  114  ELGASRVGPLGEGDEDPQEDGLEEAFEAW  142


>CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase ferredoxin-like 
half domain.  Sulfite and Nitrite reductases are key to 
both biosynthetic assimilation of sulfur and nitrogen and 
dissimilation of oxidized anions for energy transduction. Two 
copies of this repeat are found in Nitrite and Sulfite reductases 
and form a single structural domain.
Length=67

 Score = 66.4 bits (163),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  1011  FMIRCRLPGGVATPLQWIQMDEISSAYGNETMKLTTRQTFQFHGVIKRNLRSAMRAINKA  1070
             +M+R R+PGG  T  Q   + +I+  YG+  ++LTTRQ  + HGV + +L   +  + +A
Sbjct  8     YMVRVRVPGGRLTAEQLRALADIAEKYGDGEIRLTTRQNLELHGVPEEDLPELLEELAEA  67


 Score = 57.5 bits (140),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query  1291  KDEKGLNHFTFFIENGRVEDTAEFTMRSGLRELA-KLDKGEFRLTGNQHLILSNIKDEDL  1349
               + G       +  GR+  TAE  +R  L ++A K   GE RLT  Q+L L  + +EDL
Sbjct  2     PQKDGDYMVRVRVPGGRL--TAE-QLR-ALADIAEKYGDGEIRLTTRQNLELHGVPEEDL  57

Query  1350  PAVKEIMAKH  1359
             P + E +A+ 
Sbjct  58    PELLEELAEA  67



Lambda      K        H        a         alpha
   0.315    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1935027812


Query= TCONS_00013033

Length=1140
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe...  162     8e-47
CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin                        109     2e-28
CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase fer...  66.0    5e-14


>CDD:426031 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe-4S domain. 
 Sulphite and nitrite reductases are vital in the biosynthetic 
assimilation of sulphur and nitrogen, respectfully. 
They are also both important for the dissimilation of oxidized 
anions for energy transduction.
Length=153

 Score = 162 bits (413),  Expect = 8e-47, Method: Composition-based stats.
 Identities = 59/160 (37%), Positives = 81/160 (51%), Gaps = 10/160 (6%)

Query  721  AKKISDHLLPATTAYHEIWLKDDDDNKVQVAGDAVQDHEPLYGPTYLPRKFKITIAIPPH  780
                +  L P      E  L     +   +A     + EP YG  YLPRKFKI ++  P+
Sbjct  2    DNVRNVTLCPGAGLCPEELL-----DTRPLAKAIEDEFEPDYGFPYLPRKFKIAVSGCPN  56

Query  781  NDTDVYAHDIGLIAIKGADGHLEGFNVLAGGGMGTTHNNKKTYPQTGRMFGYVPADQAHI  840
            N    +A+DIG + +   DG   GFN+L GGG+G T     T         +VP +    
Sbjct  57   NCVAAHANDIGFVGVWK-DGGEIGFNILVGGGLGRTPGAAATLKV----VPFVPEEDVLE  111

Query  841  VCEKIMLVQRDFGDRKNRKHARLKYTIDDMGVETFKGKVE  880
            V E I+ V RD GDR+NRK  RLKY I+ +G+E F+ +VE
Sbjct  112  VIEAILEVYRDHGDRENRKKERLKYLIERLGLEKFREEVE  151


>CDD:425562 pfam00258, Flavodoxin_1, Flavodoxin.  
Length=142

 Score = 109 bits (274),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 44/149 (30%), Positives = 73/149 (49%), Gaps = 13/149 (9%)

Query  399  ILFASDGGNAQTLAKRLGNRGRARGLKTMVIAMDDYP--AEDLATEENVVFITSTAGQGE  456
            I + S  GN + LA+ +       G +  V+ +DD      ++  E+ ++ + ST G+GE
Sbjct  1    IFYGSQTGNTEKLAEAIAEGLGEAGFEVDVVDLDDVDETLSEIEEEDLLLVVVSTWGEGE  60

Query  457  FPQNGRSLWEVIKNSGDL---DLSTIKYSVFGLGDSHYWPRKEDKIYYNKPAKDLDARIA  513
             P N +   + +   G L   DLS +KY+VFGLGDS Y         +   AK LD +++
Sbjct  61   PPDNAKPFVDWLLLFGTLEDGDLSGLKYAVFGLGDSGYEG-------FCGAAKKLDEKLS  113

Query  514  FLGGRKLTDIGLGDDQD-PDAYQTGYSEW  541
             LG  ++  +G GD+    D  +  +  W
Sbjct  114  ELGASRVGPLGEGDEDPQEDGLEEAFEAW  142


>CDD:377044 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase ferredoxin-like 
half domain.  Sulfite and Nitrite reductases are key to 
both biosynthetic assimilation of sulfur and nitrogen and 
dissimilation of oxidized anions for energy transduction. Two 
copies of this repeat are found in Nitrite and Sulfite reductases 
and form a single structural domain.
Length=67

 Score = 66.0 bits (162),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  628  FMIRCRLPGGVATPLQWIQMDEISSAYGNETMKLTTRQTFQFHGVIKRNLRSAMRAINKA  687
            +M+R R+PGG  T  Q   + +I+  YG+  ++LTTRQ  + HGV + +L   +  + +A
Sbjct  8    YMVRVRVPGGRLTAEQLRALADIAEKYGDGEIRLTTRQNLELHGVPEEDLPELLEELAEA  67


 Score = 57.2 bits (139),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query  908  KDEKGLNHFTFFIENGRVEDTAEFTMRSGLRELA-KLDKGEFRLTGNQHLILSNIKDEDL  966
              + G       +  GR+  TAE  +R  L ++A K   GE RLT  Q+L L  + +EDL
Sbjct  2    PQKDGDYMVRVRVPGGRL--TAE-QLR-ALADIAEKYGDGEIRLTTRQNLELHGVPEEDL  57

Query  967  PAVKEIMAKH  976
            P + E +A+ 
Sbjct  58   PELLEELAEA  67



Lambda      K        H        a         alpha
   0.316    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0832    0.140     1.90     42.6     43.6 

Effective search space used: 1456276234


Query= TCONS_00018602

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461434 pfam04801, Sin_N, Sin-like protein conserved region. F...  100     3e-24


>CDD:461434 pfam04801, Sin_N, Sin-like protein conserved region.  Family 
of higher eukaryotic proteins. SIN was identified as a protein 
that interacts specifically with SXL (sex lethal) in a yeast 
two-hybrid assay. The interaction is mediated by one of 
the SXL RNA binding domains.
Length=427

 Score = 100 bits (251),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 68/287 (24%), Positives = 108/287 (38%), Gaps = 49/287 (17%)

Query  3    DSDPVIASYDVYLTDS-EISRFVLQYLDRSAEHPYDERHEQKPTAFRLKPNTGLVEVDVP  61
            D DPV+    VYL+ S     ++ QY  R A  PYD+   +   A R+KP    VE+D+ 
Sbjct  1    DDDPVVREIPVYLSKSLADKLYLFQYPLRPAWRPYDD--ARVLEA-RVKPKNQKVEMDLA  57

Query  62   IQTRV-NYDVSKGLRYGDAMRRSRSARDGGSYGLAGGFSSGAAAGGGKVKMEGNVDVEMA  120
            I T   NYD SKG    + +                     AA G G+ K E        
Sbjct  58   IDTDSSNYDKSKG----EQIAL-------------------AADGKGQKKDEKTFS----  90

Query  121  GMDSKEGSDIMRVQTLGGRIKGPEDGDPVYMLAAFRGQNLHLSPVSAVVQLHPQLHHIDA  180
                   S +M  QTL    +   D    Y +   +   LHL+P+  +VQ+ P   ++D 
Sbjct  91   -------SGLMDKQTLTS-SRAITDAS-NYAVGILKDGELHLTPLHGIVQMRPSFSYLDK  141

Query  181  LDEIPAKGRVKARKEGEEEQ----TEARAIDVKIKAAED--AEAAMVAGNLELLKKMQDE  234
             D+   K      K   E+      E + + VK    E   A+ A       L +K+ +E
Sbjct  142  ADK-KKKAGEAESKAEGEDDDEEEEEPKQVTVKFARPETEKAKKAREQSYAHLKQKIAEE  200

Query  235  KWTMYEWVDAETEEAWQTYESYMIQQDLENVPQLEAAIDSEDYLDRM  281
             W   E+   ++  + +     +              +   +YL+ +
Sbjct  201  PWIPLEYHGVDSTRS-ELERQKLFCSTTSGETNSALNLSPNEYLNLL  246



Lambda      K        H        a         alpha
   0.313    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00013034

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00013035

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00013036

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461434 pfam04801, Sin_N, Sin-like protein conserved region. F...  95.8    5e-23


>CDD:461434 pfam04801, Sin_N, Sin-like protein conserved region.  Family 
of higher eukaryotic proteins. SIN was identified as a protein 
that interacts specifically with SXL (sex lethal) in a yeast 
two-hybrid assay. The interaction is mediated by one of 
the SXL RNA binding domains.
Length=427

 Score = 95.8 bits (239),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 66/249 (27%), Positives = 97/249 (39%), Gaps = 48/249 (19%)

Query  3    DSDPVIASYDVYLTDS-EISRFVLQYLDRSAEHPYDERHEQKPTAFRLKPNTGLVEVDVP  61
            D DPV+    VYL+ S     ++ QY  R A  PYD+   +   A R+KP    VE+D+ 
Sbjct  1    DDDPVVREIPVYLSKSLADKLYLFQYPLRPAWRPYDD--ARVLEA-RVKPKNQKVEMDLA  57

Query  62   IQTRV-NYDVSKGLRYGDAMRRSRSARDGGSYGLAGGFSSGAAAGGGKVKMEGNVDVEMA  120
            I T   NYD SKG    + +                     AA G G+ K E        
Sbjct  58   IDTDSSNYDKSKG----EQIAL-------------------AADGKGQKKDEKTFS----  90

Query  121  GMDSKEGSDIMRVQTLGGRIKGPEDGDPVYMLAAFRGQNLHLSPVSAVVQLHPQLHHIDA  180
                   S +M  QTL    +   D    Y +   +   LHL+P+  +VQ+ P   ++D 
Sbjct  91   -------SGLMDKQTLTS-SRAITDAS-NYAVGILKDGELHLTPLHGIVQMRPSFSYLDK  141

Query  181  LDEIPAKGRVKARKEGEEEQ----TEARAIDVKIKAAED--AEAAMVAGNLELLKKMQDE  234
             D+   K      K   E+      E + + VK    E   A+ A       L +K+ +E
Sbjct  142  ADK-KKKAGEAESKAEGEDDDEEEEEPKQVTVKFARPETEKAKKAREQSYAHLKQKIAEE  200

Query  235  KWTMYEWVD  243
             W   E+  
Sbjct  201  PWIPLEYHG  209



Lambda      K        H        a         alpha
   0.314    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00018603

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461434 pfam04801, Sin_N, Sin-like protein conserved region. F...  98.9    8e-24


>CDD:461434 pfam04801, Sin_N, Sin-like protein conserved region.  Family 
of higher eukaryotic proteins. SIN was identified as a protein 
that interacts specifically with SXL (sex lethal) in a yeast 
two-hybrid assay. The interaction is mediated by one of 
the SXL RNA binding domains.
Length=427

 Score = 98.9 bits (247),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 68/287 (24%), Positives = 108/287 (38%), Gaps = 49/287 (17%)

Query  3    DSDPVIASYDVYLTDS-EISRFVLQYLDRSAEHPYDERHEQKPTAFRLKPNTGLVEVDVP  61
            D DPV+    VYL+ S     ++ QY  R A  PYD+   +   A R+KP    VE+D+ 
Sbjct  1    DDDPVVREIPVYLSKSLADKLYLFQYPLRPAWRPYDD--ARVLEA-RVKPKNQKVEMDLA  57

Query  62   IQTRV-NYDVSKGLRYGDAMRRSRSARDGGSYGLAGGFSSGAAAGGGKVKMEGNVDVEMA  120
            I T   NYD SKG    + +                     AA G G+ K E        
Sbjct  58   IDTDSSNYDKSKG----EQIAL-------------------AADGKGQKKDEKTFS----  90

Query  121  GMDSKEGSDIMRVQTLGGRIKGPEDGDPVYMLAAFRGQNLHLSPVSAVVQLHPQLHHIDA  180
                   S +M  QTL    +   D    Y +   +   LHL+P+  +VQ+ P   ++D 
Sbjct  91   -------SGLMDKQTLTS-SRAITDAS-NYAVGILKDGELHLTPLHGIVQMRPSFSYLDK  141

Query  181  LDEIPAKGRVKARKEGEEEQ----TEARAIDVKIKAAED--AEAAMVAGNLELLKKMQDE  234
             D+   K      K   E+      E + + VK    E   A+ A       L +K+ +E
Sbjct  142  ADK-KKKAGEAESKAEGEDDDEEEEEPKQVTVKFARPETEKAKKAREQSYAHLKQKIAEE  200

Query  235  KWTMYEWVDAETEEAWQTYESYMIQQDLENVPQLEAAIDSEDYLDRM  281
             W   E+   ++  + +     +              +   +YL+ +
Sbjct  201  PWIPLEYHGVDSTRS-ELERQKLFCSTTSGETNSALNLSPNEYLNLL  246



Lambda      K        H        a         alpha
   0.314    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00018604

Length=1375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460006 pfam00940, RNA_pol, DNA-dependent RNA polymerase. This...  746     0.0   
CDD:464270 pfam14700, RPOL_N, DNA-directed RNA polymerase N-termi...  322     3e-101


>CDD:460006 pfam00940, RNA_pol, DNA-dependent RNA polymerase.  This is a 
family of single chain RNA polymerases.
Length=411

 Score = 746 bits (1929),  Expect = 0.0, Method: Composition-based stats.
 Identities = 250/404 (62%), Positives = 301/404 (75%), Gaps = 26/404 (6%)

Query  795   KPLGASGLRWLKIQIANLSGFDKASMSEREQFTMDHLDDVLDSADKGLHGRRWWLKAEDP  854
             KPLG  GLRWLKI +ANL GFDKAS+ ER  F  D+L+D+LDSA+  L GRRWWLKAEDP
Sbjct  1     KPLGERGLRWLKIHLANLYGFDKASLDERVAFVEDNLEDILDSAENPLDGRRWWLKAEDP  60

Query  855   WQCLAACCELRNALRHPDPTQYPSRLPIHQDGSCNGLQHYAALGGDSVGAQQVNLEPSDR  914
             WQCLAAC EL NALR PDP +Y S LP+HQDGSCNGLQHYAALGGD  GA+QVNL PSDR
Sbjct  61    WQCLAACFELANALRSPDPEEYVSHLPVHQDGSCNGLQHYAALGGDEEGAKQVNLVPSDR  120

Query  915   PSDVYTGVAEFVKKEVAREAAQGHPIAKILDGRITRKIVKQTVMTNVYGVTFMGAMRQVR  974
             P DVY+GVAE V++++ ++AA+G+ IAK+L G+ITRK+VKQTVMTNVYGVTF+GA  Q+ 
Sbjct  121   PQDVYSGVAELVEEKIEKDAAKGNEIAKLLKGKITRKVVKQTVMTNVYGVTFIGAREQIE  180

Query  975   KQLIDHYPDLSYEDKKNGSLYIARKIFEALGTMFNGAHEIQHWLGDCASRITTSLSPEQI  1034
             KQL +       ED    S Y+A+KIF+++G +F GAHEIQ WLG+CA RI  S+ PEQ 
Sbjct  181   KQLKEIGDFPGEEDLYKASSYLAKKIFDSIGELFTGAHEIQDWLGECAKRIAKSVPPEQ-  239

Query  1035  EQIAKEALTPSSGRSAAKLKDPSEKFRSTVIWTTPLGLPVVQPYRVRKARRITTTLQDLS  1094
                                        S VIWTTPLGLPVVQPYR  K +++ T LQ +S
Sbjct  240   -------------------------SMSPVIWTTPLGLPVVQPYRKSKKKQVKTNLQSVS  274

Query  1095  IVDTNSEDVVSKRKQLQAFPPNFIHSLDATHMIMSANACNQAGLTFSAVHDSFWTHACDV  1154
             I D N  D V KRKQLQAFPPNFIHSLDATHM+++A AC++AGLTF+AVHDSFWTHACDV
Sbjct  275   ISDPNDTDPVDKRKQLQAFPPNFIHSLDATHMMLTALACDEAGLTFAAVHDSFWTHACDV  334

Query  1155  DTMNQILREAFVRMHSDDIIRRLASEFQVRYGQNLFLAKVDAGT  1198
             D MN+ILRE FV++HS+DI+ RL  EF+ RY  +L LAK+   +
Sbjct  335   DEMNKILREQFVKLHSEDILERLREEFKERYKGSLQLAKIPKDS  378


>CDD:464270 pfam14700, RPOL_N, DNA-directed RNA polymerase N-terminal.  This 
is the N-terminal domain of DNA-directed RNA polymerase. 
This domain has a role in interaction with regions of upstream 
promoter DNA and the nascent RNA chain, leading to the processivity 
of the enzyme. In order to make mRNA transcripts 
the RNA polymerase undergoes a transition from the initiation 
phase (which only makes short fragments of RNA) to an elongation 
phase. This domain undergoes a structural change in 
the transition from initiation to elongation phase. The structural 
change results in abolition of the promoter binding site, 
creation of a channel accommodating the heteroduplex in 
the active site and formation of an exit tunnel which the RNA 
transcript passes through after peeling off the heteroduplex.
Length=286

 Score = 322 bits (828),  Expect = 3e-101, Method: Composition-based stats.
 Identities = 134/320 (42%), Positives = 187/320 (58%), Gaps = 36/320 (11%)

Query  353  QRQLEADSIRSAMNRWRQEFDNRQKLGLDATAGGKKLGAIMTEWHSSLVARIKEELELVA  412
            Q +LE DS+ +A+ RWR+EF+  QK GL  T   K L A++ +W+ +L+  IKEE+EL+ 
Sbjct  2    QLRLERDSVEAAVERWREEFEELQKRGL-NTNLPKSLNALLWQWYEALLPAIKEEIELLK  60

Query  413  EAEANPIRTLEQKERCEYGVYLRCLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTI  472
             AEA P +T + KERCEYG YLR L  + LAA+TIL ++S  S GG++KG+KVS +  +I
Sbjct  61   AAEAKPKKT-KDKERCEYGPYLRLLPPEKLAAITILELLSLLSTGGVDKGMKVSRLAISI  119

Query  473  GKDLQDELIAEAALKNEAGTDSRRLKALKELLAGRKKKGGRAKWHALVQKMQKEDATIMW  532
            GK ++DE  A+  LK E                                K + +   I W
Sbjct  120  GKAVEDEYRAQQLLKKE--------------------------------KKKIKKKKIPW  147

Query  533  SPRVTAKIGAVLMSLLFEVGKAPVTMEDPETKKKTVTMQPAFQHAYQITWGRRTGYLHLH  592
               V AK+GAVL+SLL E  K PVT EDPET +K +  QPAF H+YQ   G++ G +  H
Sbjct  148  PQEVRAKVGAVLLSLLIETAKVPVTAEDPETGEKVIQPQPAFYHSYQYKRGKKVGVIKPH  207

Query  593  PAIVQIVAKEPTADLL-GRHLPMVCKPRPWKGMKDGGFLLYQSDIVRTTPGESLQPTYIK  651
            P +V+++ +EP  D L  RHLPM+  P+PW     GG+LL  S ++RT  G+  Q  Y+K
Sbjct  208  PELVKLLLREPARDTLTPRHLPMLVPPKPWTSYNKGGYLLSPSKLMRTKDGDE-QRAYLK  266

Query  652  TALENNGLEDIRRGLDNLGS  671
             A E   L+ +  GLD LG+
Sbjct  267  AASERGDLDQVFDGLDVLGN  286



Lambda      K        H        a         alpha
   0.317    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1757918200


Query= TCONS_00013039

Length=1375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460006 pfam00940, RNA_pol, DNA-dependent RNA polymerase. This...  746     0.0   
CDD:464270 pfam14700, RPOL_N, DNA-directed RNA polymerase N-termi...  322     3e-101


>CDD:460006 pfam00940, RNA_pol, DNA-dependent RNA polymerase.  This is a 
family of single chain RNA polymerases.
Length=411

 Score = 746 bits (1929),  Expect = 0.0, Method: Composition-based stats.
 Identities = 250/404 (62%), Positives = 301/404 (75%), Gaps = 26/404 (6%)

Query  795   KPLGASGLRWLKIQIANLSGFDKASMSEREQFTMDHLDDVLDSADKGLHGRRWWLKAEDP  854
             KPLG  GLRWLKI +ANL GFDKAS+ ER  F  D+L+D+LDSA+  L GRRWWLKAEDP
Sbjct  1     KPLGERGLRWLKIHLANLYGFDKASLDERVAFVEDNLEDILDSAENPLDGRRWWLKAEDP  60

Query  855   WQCLAACCELRNALRHPDPTQYPSRLPIHQDGSCNGLQHYAALGGDSVGAQQVNLEPSDR  914
             WQCLAAC EL NALR PDP +Y S LP+HQDGSCNGLQHYAALGGD  GA+QVNL PSDR
Sbjct  61    WQCLAACFELANALRSPDPEEYVSHLPVHQDGSCNGLQHYAALGGDEEGAKQVNLVPSDR  120

Query  915   PSDVYTGVAEFVKKEVAREAAQGHPIAKILDGRITRKIVKQTVMTNVYGVTFMGAMRQVR  974
             P DVY+GVAE V++++ ++AA+G+ IAK+L G+ITRK+VKQTVMTNVYGVTF+GA  Q+ 
Sbjct  121   PQDVYSGVAELVEEKIEKDAAKGNEIAKLLKGKITRKVVKQTVMTNVYGVTFIGAREQIE  180

Query  975   KQLIDHYPDLSYEDKKNGSLYIARKIFEALGTMFNGAHEIQHWLGDCASRITTSLSPEQI  1034
             KQL +       ED    S Y+A+KIF+++G +F GAHEIQ WLG+CA RI  S+ PEQ 
Sbjct  181   KQLKEIGDFPGEEDLYKASSYLAKKIFDSIGELFTGAHEIQDWLGECAKRIAKSVPPEQ-  239

Query  1035  EQIAKEALTPSSGRSAAKLKDPSEKFRSTVIWTTPLGLPVVQPYRVRKARRITTTLQDLS  1094
                                        S VIWTTPLGLPVVQPYR  K +++ T LQ +S
Sbjct  240   -------------------------SMSPVIWTTPLGLPVVQPYRKSKKKQVKTNLQSVS  274

Query  1095  IVDTNSEDVVSKRKQLQAFPPNFIHSLDATHMIMSANACNQAGLTFSAVHDSFWTHACDV  1154
             I D N  D V KRKQLQAFPPNFIHSLDATHM+++A AC++AGLTF+AVHDSFWTHACDV
Sbjct  275   ISDPNDTDPVDKRKQLQAFPPNFIHSLDATHMMLTALACDEAGLTFAAVHDSFWTHACDV  334

Query  1155  DTMNQILREAFVRMHSDDIIRRLASEFQVRYGQNLFLAKVDAGT  1198
             D MN+ILRE FV++HS+DI+ RL  EF+ RY  +L LAK+   +
Sbjct  335   DEMNKILREQFVKLHSEDILERLREEFKERYKGSLQLAKIPKDS  378


>CDD:464270 pfam14700, RPOL_N, DNA-directed RNA polymerase N-terminal.  This 
is the N-terminal domain of DNA-directed RNA polymerase. 
This domain has a role in interaction with regions of upstream 
promoter DNA and the nascent RNA chain, leading to the processivity 
of the enzyme. In order to make mRNA transcripts 
the RNA polymerase undergoes a transition from the initiation 
phase (which only makes short fragments of RNA) to an elongation 
phase. This domain undergoes a structural change in 
the transition from initiation to elongation phase. The structural 
change results in abolition of the promoter binding site, 
creation of a channel accommodating the heteroduplex in 
the active site and formation of an exit tunnel which the RNA 
transcript passes through after peeling off the heteroduplex.
Length=286

 Score = 322 bits (828),  Expect = 3e-101, Method: Composition-based stats.
 Identities = 134/320 (42%), Positives = 187/320 (58%), Gaps = 36/320 (11%)

Query  353  QRQLEADSIRSAMNRWRQEFDNRQKLGLDATAGGKKLGAIMTEWHSSLVARIKEELELVA  412
            Q +LE DS+ +A+ RWR+EF+  QK GL  T   K L A++ +W+ +L+  IKEE+EL+ 
Sbjct  2    QLRLERDSVEAAVERWREEFEELQKRGL-NTNLPKSLNALLWQWYEALLPAIKEEIELLK  60

Query  413  EAEANPIRTLEQKERCEYGVYLRCLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTI  472
             AEA P +T + KERCEYG YLR L  + LAA+TIL ++S  S GG++KG+KVS +  +I
Sbjct  61   AAEAKPKKT-KDKERCEYGPYLRLLPPEKLAAITILELLSLLSTGGVDKGMKVSRLAISI  119

Query  473  GKDLQDELIAEAALKNEAGTDSRRLKALKELLAGRKKKGGRAKWHALVQKMQKEDATIMW  532
            GK ++DE  A+  LK E                                K + +   I W
Sbjct  120  GKAVEDEYRAQQLLKKE--------------------------------KKKIKKKKIPW  147

Query  533  SPRVTAKIGAVLMSLLFEVGKAPVTMEDPETKKKTVTMQPAFQHAYQITWGRRTGYLHLH  592
               V AK+GAVL+SLL E  K PVT EDPET +K +  QPAF H+YQ   G++ G +  H
Sbjct  148  PQEVRAKVGAVLLSLLIETAKVPVTAEDPETGEKVIQPQPAFYHSYQYKRGKKVGVIKPH  207

Query  593  PAIVQIVAKEPTADLL-GRHLPMVCKPRPWKGMKDGGFLLYQSDIVRTTPGESLQPTYIK  651
            P +V+++ +EP  D L  RHLPM+  P+PW     GG+LL  S ++RT  G+  Q  Y+K
Sbjct  208  PELVKLLLREPARDTLTPRHLPMLVPPKPWTSYNKGGYLLSPSKLMRTKDGDE-QRAYLK  266

Query  652  TALENNGLEDIRRGLDNLGS  671
             A E   L+ +  GLD LG+
Sbjct  267  AASERGDLDQVFDGLDVLGN  286



Lambda      K        H        a         alpha
   0.317    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1757918200


Query= TCONS_00013042

Length=954
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  82.2    1e-17


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 82.2 bits (203),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 60/322 (19%), Positives = 98/322 (30%), Gaps = 80/322 (25%)

Query  420  IFRKQSFLHPTKPRV------CTPGLLASMLWVAAQTSDAPFLTSPPSARGRVCQKLLEL  473
            I  + SFL              +P LL ++L + A  S++P   S  S            
Sbjct  14   ILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSSLTD---------  64

Query  474  TIGLLRPLIHGPAPGETSPNYAANMVINGVALGGFGVSMDQLGAQSSATGAVDDVATYVH  533
                    IH            A ++I+      F      L            +   + 
Sbjct  65   ---EAADGIHFF--------LRALILIHE----DFSSPSSSLWI----------LQALLL  99

Query  534  LATVISASEYKAASMRWWTAAWSLARELKLGRELPPNTPHARPDAERDGDPDADLSKRHP  593
            L      +  +    R+   A  LAR L L R+    +P  +   E     +A+L     
Sbjct  100  LELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIE-----EAELR----  150

Query  594  PPLITSMGHGPGNTIINITEEEREERRRLWWLLYATDRHLALCYNRPLTLLDKECEGLLQ  653
                                      RRL+W  +  DR ++L   RP  LL      L  
Sbjct  151  --------------------------RRLFWACFYLDRLISLILGRP-PLLSDSDIDLPL  183

Query  654  PMND-DLWQAGDFATYRQAGPPVECTGHSMFGYFLPLMTILGEIVDLQQARNHPRFGLAF  712
            P +D DLW++            +E        + + L  IL +I+    +          
Sbjct  184  PCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIRSTLDQ---  240

Query  713  RNSAECEAQVLEIARQLDVYAQ  734
            R+     + V E+ R LD + +
Sbjct  241  RDLQLKLSWVRELERALDNWRK  262



Lambda      K        H        a         alpha
   0.316    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1214821608


Query= TCONS_00013047

Length=954
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  82.2    1e-17


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 82.2 bits (203),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 60/322 (19%), Positives = 98/322 (30%), Gaps = 80/322 (25%)

Query  420  IFRKQSFLHPTKPRV------CTPGLLASMLWVAAQTSDAPFLTSPPSARGRVCQKLLEL  473
            I  + SFL              +P LL ++L + A  S++P   S  S            
Sbjct  14   ILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSSLTD---------  64

Query  474  TIGLLRPLIHGPAPGETSPNYAANMVINGVALGGFGVSMDQLGAQSSATGAVDDVATYVH  533
                    IH            A ++I+      F      L            +   + 
Sbjct  65   ---EAADGIHFF--------LRALILIHE----DFSSPSSSLWI----------LQALLL  99

Query  534  LATVISASEYKAASMRWWTAAWSLARELKLGRELPPNTPHARPDAERDGDPDADLSKRHP  593
            L      +  +    R+   A  LAR L L R+    +P  +   E     +A+L     
Sbjct  100  LELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIE-----EAELR----  150

Query  594  PPLITSMGHGPGNTIINITEEEREERRRLWWLLYATDRHLALCYNRPLTLLDKECEGLLQ  653
                                      RRL+W  +  DR ++L   RP  LL      L  
Sbjct  151  --------------------------RRLFWACFYLDRLISLILGRP-PLLSDSDIDLPL  183

Query  654  PMND-DLWQAGDFATYRQAGPPVECTGHSMFGYFLPLMTILGEIVDLQQARNHPRFGLAF  712
            P +D DLW++            +E        + + L  IL +I+    +          
Sbjct  184  PCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIRSTLDQ---  240

Query  713  RNSAECEAQVLEIARQLDVYAQ  734
            R+     + V E+ R LD + +
Sbjct  241  RDLQLKLSWVRELERALDNWRK  262



Lambda      K        H        a         alpha
   0.316    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1214821608


Query= TCONS_00013043

Length=644
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  79.8    4e-17


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 79.8 bits (197),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 60/322 (19%), Positives = 98/322 (30%), Gaps = 80/322 (25%)

Query  110  IFRKQSFLHPTKPRV------CTPGLLASMLWVAAQTSDAPFLTSPPSARGRVCQKLLEL  163
            I  + SFL              +P LL ++L + A  S++P   S  S            
Sbjct  14   ILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSSLTD---------  64

Query  164  TIGLLRPLIHGPAPGETSPNYAANMVINGVALGGFGVSMDQLGAQSSATGAVDDVATYVH  223
                    IH            A ++I+      F      L            +   + 
Sbjct  65   ---EAADGIHFF--------LRALILIHE----DFSSPSSSLWI----------LQALLL  99

Query  224  LATVISASEYKAASMRWWTAAWSLARELKLGRELPPNTPHARPDAERDGDPDADLSKRHP  283
            L      +  +    R+   A  LAR L L R+    +P  +   E     +A+L     
Sbjct  100  LELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIE-----EAELR----  150

Query  284  PPLITSMGHGPGNTIINITEEEREERRRLWWLLYATDRHLALCYNRPLTLLDKECEGLLQ  343
                                      RRL+W  +  DR ++L   RP  LL      L  
Sbjct  151  --------------------------RRLFWACFYLDRLISLILGRP-PLLSDSDIDLPL  183

Query  344  PMND-DLWQAGDFATYRQAGPPVECTGHSMFGYFLPLMTILGEIVDLQQARNHPRFGLAF  402
            P +D DLW++            +E        + + L  IL +I+    +          
Sbjct  184  PCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIRSTLDQ---  240

Query  403  RNSAECEAQVLEIARQLDVYAQ  424
            R+     + V E+ R LD + +
Sbjct  241  RDLQLKLSWVRELERALDNWRK  262



Lambda      K        H        a         alpha
   0.319    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 812609290


Query= TCONS_00018606

Length=954
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  82.2    1e-17


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 82.2 bits (203),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 60/322 (19%), Positives = 98/322 (30%), Gaps = 80/322 (25%)

Query  420  IFRKQSFLHPTKPRV------CTPGLLASMLWVAAQTSDAPFLTSPPSARGRVCQKLLEL  473
            I  + SFL              +P LL ++L + A  S++P   S  S            
Sbjct  14   ILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSSLTD---------  64

Query  474  TIGLLRPLIHGPAPGETSPNYAANMVINGVALGGFGVSMDQLGAQSSATGAVDDVATYVH  533
                    IH            A ++I+      F      L            +   + 
Sbjct  65   ---EAADGIHFF--------LRALILIHE----DFSSPSSSLWI----------LQALLL  99

Query  534  LATVISASEYKAASMRWWTAAWSLARELKLGRELPPNTPHARPDAERDGDPDADLSKRHP  593
            L      +  +    R+   A  LAR L L R+    +P  +   E     +A+L     
Sbjct  100  LELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIE-----EAELR----  150

Query  594  PPLITSMGHGPGNTIINITEEEREERRRLWWLLYATDRHLALCYNRPLTLLDKECEGLLQ  653
                                      RRL+W  +  DR ++L   RP  LL      L  
Sbjct  151  --------------------------RRLFWACFYLDRLISLILGRP-PLLSDSDIDLPL  183

Query  654  PMND-DLWQAGDFATYRQAGPPVECTGHSMFGYFLPLMTILGEIVDLQQARNHPRFGLAF  712
            P +D DLW++            +E        + + L  IL +I+    +          
Sbjct  184  PCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIRSTLDQ---  240

Query  713  RNSAECEAQVLEIARQLDVYAQ  734
            R+     + V E+ R LD + +
Sbjct  241  RDLQLKLSWVRELERALDNWRK  262



Lambda      K        H        a         alpha
   0.316    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1214821608


Query= TCONS_00018607

Length=976
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  82.2    1e-17


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 82.2 bits (203),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 60/322 (19%), Positives = 98/322 (30%), Gaps = 80/322 (25%)

Query  420  IFRKQSFLHPTKPRV------CTPGLLASMLWVAAQTSDAPFLTSPPSARGRVCQKLLEL  473
            I  + SFL              +P LL ++L + A  S++P   S  S            
Sbjct  14   ILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSSLTD---------  64

Query  474  TIGLLRPLIHGPAPGETSPNYAANMVINGVALGGFGVSMDQLGAQSSATGAVDDVATYVH  533
                    IH            A ++I+      F      L            +   + 
Sbjct  65   ---EAADGIHFF--------LRALILIHE----DFSSPSSSLWI----------LQALLL  99

Query  534  LATVISASEYKAASMRWWTAAWSLARELKLGRELPPNTPHARPDAERDGDPDADLSKRHP  593
            L      +  +    R+   A  LAR L L R+    +P  +   E     +A+L     
Sbjct  100  LELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIE-----EAELR----  150

Query  594  PPLITSMGHGPGNTIINITEEEREERRRLWWLLYATDRHLALCYNRPLTLLDKECEGLLQ  653
                                      RRL+W  +  DR ++L   RP  LL      L  
Sbjct  151  --------------------------RRLFWACFYLDRLISLILGRP-PLLSDSDIDLPL  183

Query  654  PMND-DLWQAGDFATYRQAGPPVECTGHSMFGYFLPLMTILGEIVDLQQARNHPRFGLAF  712
            P +D DLW++            +E        + + L  IL +I+    +          
Sbjct  184  PCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIRSTLDQ---  240

Query  713  RNSAECEAQVLEIARQLDVYAQ  734
            R+     + V E+ R LD + +
Sbjct  241  RDLQLKLSWVRELERALDNWRK  262



Lambda      K        H        a         alpha
   0.316    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1245970880


Query= TCONS_00013045

Length=954
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  82.2    1e-17


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 82.2 bits (203),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 60/322 (19%), Positives = 98/322 (30%), Gaps = 80/322 (25%)

Query  420  IFRKQSFLHPTKPRV------CTPGLLASMLWVAAQTSDAPFLTSPPSARGRVCQKLLEL  473
            I  + SFL              +P LL ++L + A  S++P   S  S            
Sbjct  14   ILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSSLTD---------  64

Query  474  TIGLLRPLIHGPAPGETSPNYAANMVINGVALGGFGVSMDQLGAQSSATGAVDDVATYVH  533
                    IH            A ++I+      F      L            +   + 
Sbjct  65   ---EAADGIHFF--------LRALILIHE----DFSSPSSSLWI----------LQALLL  99

Query  534  LATVISASEYKAASMRWWTAAWSLARELKLGRELPPNTPHARPDAERDGDPDADLSKRHP  593
            L      +  +    R+   A  LAR L L R+    +P  +   E     +A+L     
Sbjct  100  LELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIE-----EAELR----  150

Query  594  PPLITSMGHGPGNTIINITEEEREERRRLWWLLYATDRHLALCYNRPLTLLDKECEGLLQ  653
                                      RRL+W  +  DR ++L   RP  LL      L  
Sbjct  151  --------------------------RRLFWACFYLDRLISLILGRP-PLLSDSDIDLPL  183

Query  654  PMND-DLWQAGDFATYRQAGPPVECTGHSMFGYFLPLMTILGEIVDLQQARNHPRFGLAF  712
            P +D DLW++            +E        + + L  IL +I+    +          
Sbjct  184  PCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIRSTLDQ---  240

Query  713  RNSAECEAQVLEIARQLDVYAQ  734
            R+     + V E+ R LD + +
Sbjct  241  RDLQLKLSWVRELERALDNWRK  262



Lambda      K        H        a         alpha
   0.316    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1214821608


Query= TCONS_00013044

Length=954
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  82.2    1e-17


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 82.2 bits (203),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 60/322 (19%), Positives = 98/322 (30%), Gaps = 80/322 (25%)

Query  420  IFRKQSFLHPTKPRV------CTPGLLASMLWVAAQTSDAPFLTSPPSARGRVCQKLLEL  473
            I  + SFL              +P LL ++L + A  S++P   S  S            
Sbjct  14   ILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSSLTD---------  64

Query  474  TIGLLRPLIHGPAPGETSPNYAANMVINGVALGGFGVSMDQLGAQSSATGAVDDVATYVH  533
                    IH            A ++I+      F      L            +   + 
Sbjct  65   ---EAADGIHFF--------LRALILIHE----DFSSPSSSLWI----------LQALLL  99

Query  534  LATVISASEYKAASMRWWTAAWSLARELKLGRELPPNTPHARPDAERDGDPDADLSKRHP  593
            L      +  +    R+   A  LAR L L R+    +P  +   E     +A+L     
Sbjct  100  LELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIE-----EAELR----  150

Query  594  PPLITSMGHGPGNTIINITEEEREERRRLWWLLYATDRHLALCYNRPLTLLDKECEGLLQ  653
                                      RRL+W  +  DR ++L   RP  LL      L  
Sbjct  151  --------------------------RRLFWACFYLDRLISLILGRP-PLLSDSDIDLPL  183

Query  654  PMND-DLWQAGDFATYRQAGPPVECTGHSMFGYFLPLMTILGEIVDLQQARNHPRFGLAF  712
            P +D DLW++            +E        + + L  IL +I+    +          
Sbjct  184  PCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIRSTLDQ---  240

Query  713  RNSAECEAQVLEIARQLDVYAQ  734
            R+     + V E+ R LD + +
Sbjct  241  RDLQLKLSWVRELERALDNWRK  262



Lambda      K        H        a         alpha
   0.316    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0817    0.140     1.90     42.6     43.6 

Effective search space used: 1214821608


Query= TCONS_00018608

Length=976
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  82.2    1e-17


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 82.2 bits (203),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 60/322 (19%), Positives = 98/322 (30%), Gaps = 80/322 (25%)

Query  420  IFRKQSFLHPTKPRV------CTPGLLASMLWVAAQTSDAPFLTSPPSARGRVCQKLLEL  473
            I  + SFL              +P LL ++L + A  S++P   S  S            
Sbjct  14   ILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSSLTD---------  64

Query  474  TIGLLRPLIHGPAPGETSPNYAANMVINGVALGGFGVSMDQLGAQSSATGAVDDVATYVH  533
                    IH            A ++I+      F      L            +   + 
Sbjct  65   ---EAADGIHFF--------LRALILIHE----DFSSPSSSLWI----------LQALLL  99

Query  534  LATVISASEYKAASMRWWTAAWSLARELKLGRELPPNTPHARPDAERDGDPDADLSKRHP  593
            L      +  +    R+   A  LAR L L R+    +P  +   E     +A+L     
Sbjct  100  LELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIE-----EAELR----  150

Query  594  PPLITSMGHGPGNTIINITEEEREERRRLWWLLYATDRHLALCYNRPLTLLDKECEGLLQ  653
                                      RRL+W  +  DR ++L   RP  LL      L  
Sbjct  151  --------------------------RRLFWACFYLDRLISLILGRP-PLLSDSDIDLPL  183

Query  654  PMND-DLWQAGDFATYRQAGPPVECTGHSMFGYFLPLMTILGEIVDLQQARNHPRFGLAF  712
            P +D DLW++            +E        + + L  IL +I+    +          
Sbjct  184  PCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIRSTLDQ---  240

Query  713  RNSAECEAQVLEIARQLDVYAQ  734
            R+     + V E+ R LD + +
Sbjct  241  RDLQLKLSWVRELERALDNWRK  262



Lambda      K        H        a         alpha
   0.316    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1245970880


Query= TCONS_00013046

Length=748
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  79.8    5e-17


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 79.8 bits (197),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 60/322 (19%), Positives = 98/322 (30%), Gaps = 80/322 (25%)

Query  192  IFRKQSFLHPTKPRV------CTPGLLASMLWVAAQTSDAPFLTSPPSARGRVCQKLLEL  245
            I  + SFL              +P LL ++L + A  S++P   S  S            
Sbjct  14   ILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSSLTD---------  64

Query  246  TIGLLRPLIHGPAPGETSPNYAANMVINGVALGGFGVSMDQLGAQSSATGAVDDVATYVH  305
                    IH            A ++I+      F      L            +   + 
Sbjct  65   ---EAADGIHFF--------LRALILIHE----DFSSPSSSLWI----------LQALLL  99

Query  306  LATVISASEYKAASMRWWTAAWSLARELKLGRELPPNTPHARPDAERDGDPDADLSKRHP  365
            L      +  +    R+   A  LAR L L R+    +P  +   E     +A+L     
Sbjct  100  LELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIE-----EAELR----  150

Query  366  PPLITSMGHGPGNTIINITEEEREERRRLWWLLYATDRHLALCYNRPLTLLDKECEGLLQ  425
                                      RRL+W  +  DR ++L   RP  LL      L  
Sbjct  151  --------------------------RRLFWACFYLDRLISLILGRP-PLLSDSDIDLPL  183

Query  426  PMND-DLWQAGDFATYRQAGPPVECTGHSMFGYFLPLMTILGEIVDLQQARNHPRFGLAF  484
            P +D DLW++            +E        + + L  IL +I+    +          
Sbjct  184  PCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIRSTLDQ---  240

Query  485  RNSAECEAQVLEIARQLDVYAQ  506
            R+     + V E+ R LD + +
Sbjct  241  RDLQLKLSWVRELERALDNWRK  262



Lambda      K        H        a         alpha
   0.317    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 951669408


Query= TCONS_00018609

Length=954
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  82.2    1e-17


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 82.2 bits (203),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 60/322 (19%), Positives = 98/322 (30%), Gaps = 80/322 (25%)

Query  420  IFRKQSFLHPTKPRV------CTPGLLASMLWVAAQTSDAPFLTSPPSARGRVCQKLLEL  473
            I  + SFL              +P LL ++L + A  S++P   S  S            
Sbjct  14   ILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSSLTD---------  64

Query  474  TIGLLRPLIHGPAPGETSPNYAANMVINGVALGGFGVSMDQLGAQSSATGAVDDVATYVH  533
                    IH            A ++I+      F      L            +   + 
Sbjct  65   ---EAADGIHFF--------LRALILIHE----DFSSPSSSLWI----------LQALLL  99

Query  534  LATVISASEYKAASMRWWTAAWSLARELKLGRELPPNTPHARPDAERDGDPDADLSKRHP  593
            L      +  +    R+   A  LAR L L R+    +P  +   E     +A+L     
Sbjct  100  LELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIE-----EAELR----  150

Query  594  PPLITSMGHGPGNTIINITEEEREERRRLWWLLYATDRHLALCYNRPLTLLDKECEGLLQ  653
                                      RRL+W  +  DR ++L   RP  LL      L  
Sbjct  151  --------------------------RRLFWACFYLDRLISLILGRP-PLLSDSDIDLPL  183

Query  654  PMND-DLWQAGDFATYRQAGPPVECTGHSMFGYFLPLMTILGEIVDLQQARNHPRFGLAF  712
            P +D DLW++            +E        + + L  IL +I+    +          
Sbjct  184  PCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIRSTLDQ---  240

Query  713  RNSAECEAQVLEIARQLDVYAQ  734
            R+     + V E+ R LD + +
Sbjct  241  RDLQLKLSWVRELERALDNWRK  262



Lambda      K        H        a         alpha
   0.316    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1214821608


Query= TCONS_00013048

Length=244


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00013050

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460391 pfam01940, DUF92, Integral membrane protein DUF92. Mem...  229     9e-75


>CDD:460391 pfam01940, DUF92, Integral membrane protein DUF92.  Members of 
this family have several predicted transmembrane helices. 
The function of these prokaryotic proteins is unknown.
Length=237

 Score = 229 bits (587),  Expect = 9e-75, Method: Composition-based stats.
 Identities = 108/244 (44%), Positives = 138/244 (57%), Gaps = 31/244 (13%)

Query  8    PAVLALAHRAWSRKTLTPLGIITAVLTAIAHVLHPWS-TPFALLAVFYLGGSKVTKVKHE  66
               L LA+ A+ +K+LTP G + AVL      L P     F LL VF+L GS  TK K +
Sbjct  1    LLSLLLAYLAYRKKSLTPSGALAAVLVGTLIALGPGGWRWFLLLLVFFLLGSLATKYKKD  60

Query  67   VKSRLTLSATGAEGGETQRTHIQVLANSVVATVL-LVYGAEKEEEECFSLGRRAGDVLVV  125
             K+ L L    AEG    R  +QVLAN  VA +L L+Y             +    +L++
Sbjct  61   RKAALGL----AEGKGGARGAVQVLANGGVAALLALLYAF---------TYQPLSPLLLL  107

Query  126  GFVANYAAVAADTFSSELGILSKSKPRLITSPTLRVVPPGTNGGVTATGLLAGLLGAFSI  185
            GFV +YAA  ADT++SE+G L   KPRLIT  TL+ VPPGTNGGV+  G LAGLLGA  I
Sbjct  108  GFVGSYAAALADTWASEIGKLLSKKPRLIT--TLKPVPPGTNGGVSLLGTLAGLLGALLI  165

Query  186  AVTSAILIPYCSGEASGPVSRLQWVLAMTVWGTLGSVVDSILGGLLQASVVDKRSGKIVE  245
             +  A+               L  +L +T+ G LGS++DS+LG  LQAS  DKR+GKIVE
Sbjct  166  GLLYALG--------------LILILLVTLAGFLGSLLDSLLGATLQASYYDKRTGKIVE  211

Query  246  GTGG  249
            G G 
Sbjct  212  GPGR  215



Lambda      K        H        a         alpha
   0.318    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00013052

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00013053

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460391 pfam01940, DUF92, Integral membrane protein DUF92. Mem...  103     1e-28


>CDD:460391 pfam01940, DUF92, Integral membrane protein DUF92.  Members of 
this family have several predicted transmembrane helices. 
The function of these prokaryotic proteins is unknown.
Length=237

 Score = 103 bits (259),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 47/132 (36%), Positives = 63/132 (48%), Gaps = 20/132 (15%)

Query  8    PAVLALAHRAWSRKTLTPLGIITAVLTAIAHVLHPWS-TPFALLAVFYLGGSKVTKVKHE  66
               L LA+ A+ +K+LTP G + AVL      L P     F LL VF+L GS  TK K +
Sbjct  1    LLSLLLAYLAYRKKSLTPSGALAAVLVGTLIALGPGGWRWFLLLLVFFLLGSLATKYKKD  60

Query  67   VKSRLTLSATGAEGGETQRTHIQVLANSVVATVLVLLHAWVLVYGAEKEEEECFSLGRRA  126
             K+ L L    AEG    R  +QVLAN  VA +L LL+A+                 +  
Sbjct  61   RKAALGL----AEGKGGARGAVQVLANGGVAALLALLYAF---------------TYQPL  101

Query  127  GDVLVVGFVAYV  138
              +L++GFV   
Sbjct  102  SPLLLLGFVGSY  113



Lambda      K        H        a         alpha
   0.323    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00013051

Length=844
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462944 pfam10017, Methyltransf_33, Histidine-specific methylt...  303     5e-97
CDD:397722 pfam03781, FGE-sulfatase, Sulfatase-modifying factor e...  112     3e-28


>CDD:462944 pfam10017, Methyltransf_33, Histidine-specific methyltransferase, 
SAM-dependent.  The mycobacterial members of this family 
are expressed from part of the ergothioneine biosynthetic 
gene cluster. EGTD is the histidine methyltransferase that transfers 
three methyl groups to the alpha-amino moiety of histidine, 
in the first stage of the production of this histidine 
betaine derivative that carries a thiol group attached to 
the C2 atom of an imidazole ring.
Length=304

 Score = 303 bits (778),  Expect = 5e-97, Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 165/312 (53%), Gaps = 12/312 (4%)

Query  25   LVNEIRKGLNPPEGTPRSLPTMLLYDAQGLKLFEEITYVDEYYLTNAEIEVLQNHSKKIV  84
               ++  GL+ P   P++LP    YDA+G +LFE+IT + EYY T  EI +L+ H+ +I 
Sbjct  1    FRADVLAGLSAP---PKTLPPKYFYDARGSELFEQITELPEYYPTRTEIAILRRHAAEIA  57

Query  85   ERVPENAQLLELGSGNLRKIKILLQEFERTGKHVDYYALDLSLSELQRTFVEVSSDEYSH  144
              +P  A L+ELGSG+ RK ++LL      GK V Y  +D+S   L+ +   +++D Y  
Sbjct  58   ALIPA-AVLVELGSGSSRKTRLLLDALPAAGKPVTYVPIDISAEALEESAAALAAD-YPG  115

Query  145  VDLHGLHGTYDDALAWLSNPQNLQRPTVVMSMGSSIGNFSREGAAEFLAQFARLLKPSDL  204
            + +HGL G Y+D LA L  P     P +V+ +GS+IGNF+ + AA FL +    L P DL
Sbjct  116  LTVHGLVGDYEDGLARL--PPAGGGPRLVLFLGSTIGNFTPDEAAAFLRRIRAALGPGDL  173

Query  205  MIIGLDACTDPDKVYKAYNDSKGITQRFYENGLLHANAVLGYEAFQLSEWEVVTDYDVAG  264
            +++G+D   DP+K+  AYND+ G+T  F  N L   N  LG   F L ++E    Y+   
Sbjct  174  LLLGVDLVKDPEKLEAAYNDAAGVTAAFNLNLLRRINRELG-ADFDLDDFEHRAFYNPEE  232

Query  265  GRHRAFYSPK--QNVTIDG--VLLQKGEKLVFEEATKYSPQQREQLWRDANLVLCEELGI  320
            GR       +  Q V +    +    GE +  E + KY+ ++   L   A L + +    
Sbjct  233  GRIEMHLVSRRDQTVRVGLLTIDFAAGETIHTEISYKYTLEEFRALLAAAGLEVVKVWTD  292

Query  321  SSEEYHIHLLSP  332
                + +HLL  
Sbjct  293  PKGWFALHLLRA  304


>CDD:397722 pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. 
 This domain is found in eukaryotic proteins required for 
post-translational sulfatase modification (SUMF1). These proteins 
are associated with the rare disorder multiple sulfatase 
deficiency (MSD). The protein product of the SUMF1 gene is 
FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. 
Sulfatases are enzymes essential for degradation and 
remodelling of sulfate esters, and formylglycine (FGly), 
the key catalytic in the active site, is unique to sulfatases. 
FGE is localized to the endoplasmic reticulum (ER) and interacts 
with and modifies the unfolded form of newly synthesized 
sulfatases. FGE is a single-domain monomer with a surprising 
paucity of secondary structure that adopts a unique fold 
which is stabilized by two Ca2+ ions. The effect of all mutations 
found in MSD patients is explained by the FGE structure, 
providing a molecular basis for MSD. A redox-active disulfide 
bond is present in the active site of FGE. An oxidized 
cysteine residue, possibly cysteine sulfenic acid, has been 
detected that may allow formulation of a structure-based 
mechanism for FGly formation from cysteine residues in all sulfatases. 
In Mycobacteria and Treponema denticola this enzyme 
functions as an iron(II)-dependent oxidoreductase.
Length=259

 Score = 112 bits (282),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 74/300 (25%), Positives = 97/300 (32%), Gaps = 73/300 (24%)

Query  555  FGWDNEKPQRTITVRAFEAQAHAITNGEYAKYLQATRQRRR-PESWVLTHSDENYPISKG  613
             G DNE P   +TVR F    + +TN +YA +++AT         W       N+     
Sbjct  21   TGNDNEAPAHDVTVRPFAIDKYPVTNAQYAAFVEATGYTTEVYPQWWAEVEGANW-----  75

Query  614  VTLESSQATKDFMDNFAVRTVFGPVPLEFA-QDWPVM-ASYDELALYAEWVGC------R  665
                              R   G +       D PV   S+ +   YA W+G       R
Sbjct  76   ------------------RHPSGGLSDIDDGADHPVTGVSWYDAVAYARWLGKRTGNGYR  117

Query  666  LPTYEEVKSIYNYSAQLKETRQHEPSDHESNGVKGINRDMVTNGHSKVHQDKPRTPERQP  725
            LPT  E    + Y+A                G KG              +  P   E  P
Sbjct  118  LPTEAE----WEYAA--------------RGGSKG--------------RRYPWGDELYP  145

Query  726  IQPPSQSTMPVFVDLHGCNVGFKHWHPTPV-IQNGDRLAGHGELGGVWEWTSTPLTPHDG  784
                 Q     F + H       +   +PV     + L  +   G VWEWTS    PH  
Sbjct  146  AGNIWQG--ADFPNEH-AGADSFNGRTSPVGSFPPNALGLYDMAGNVWEWTSDWYKPHYS  202

Query  785  FKAMDIYPGYTADFFDGKHNIVLGGSWATHP-RIAGRTTF-VNWYQHNYPYTWAGARLVR  842
            F     Y   + D F G + +V GGSWA        R  F  N           G RLVR
Sbjct  203  FAP---YDELSRDNFGGGYRVVRGGSWACSVYPSRLRPAFRGNCQTPGTRADDVGFRLVR  259



Lambda      K        H        a         alpha
   0.317    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1075199986


Query= TCONS_00018610

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397722 pfam03781, FGE-sulfatase, Sulfatase-modifying factor e...  106     2e-26


>CDD:397722 pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. 
 This domain is found in eukaryotic proteins required for 
post-translational sulfatase modification (SUMF1). These proteins 
are associated with the rare disorder multiple sulfatase 
deficiency (MSD). The protein product of the SUMF1 gene is 
FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. 
Sulfatases are enzymes essential for degradation and 
remodelling of sulfate esters, and formylglycine (FGly), 
the key catalytic in the active site, is unique to sulfatases. 
FGE is localized to the endoplasmic reticulum (ER) and interacts 
with and modifies the unfolded form of newly synthesized 
sulfatases. FGE is a single-domain monomer with a surprising 
paucity of secondary structure that adopts a unique fold 
which is stabilized by two Ca2+ ions. The effect of all mutations 
found in MSD patients is explained by the FGE structure, 
providing a molecular basis for MSD. A redox-active disulfide 
bond is present in the active site of FGE. An oxidized 
cysteine residue, possibly cysteine sulfenic acid, has been 
detected that may allow formulation of a structure-based 
mechanism for FGly formation from cysteine residues in all sulfatases. 
In Mycobacteria and Treponema denticola this enzyme 
functions as an iron(II)-dependent oxidoreductase.
Length=259

 Score = 106 bits (266),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 74/300 (25%), Positives = 97/300 (32%), Gaps = 73/300 (24%)

Query  237  FGWDNEKPQRTITVRAFEAQAHAITNGEYAKYLQATRQRRR-PESWVLTHSDENYPISKG  295
             G DNE P   +TVR F    + +TN +YA +++AT         W       N+     
Sbjct  21   TGNDNEAPAHDVTVRPFAIDKYPVTNAQYAAFVEATGYTTEVYPQWWAEVEGANW-----  75

Query  296  VTLESSQATKDFMDNFAVRTVFGPVPLEFA-QDWPVM-ASYDELALYAEWVGC------R  347
                              R   G +       D PV   S+ +   YA W+G       R
Sbjct  76   ------------------RHPSGGLSDIDDGADHPVTGVSWYDAVAYARWLGKRTGNGYR  117

Query  348  LPTYEEVKSIYNYSAQLKETRQHEPSDHESNGVKGINRDMVTNGHSKVHQDKPRTPERQP  407
            LPT  E    + Y+A                G KG              +  P   E  P
Sbjct  118  LPTEAE----WEYAA--------------RGGSKG--------------RRYPWGDELYP  145

Query  408  IQPPSQSTMPVFVDLHGCNVGFKHWHPTPV-IQNGDRLAGHGELGGVWEWTSTPLTPHDG  466
                 Q     F + H       +   +PV     + L  +   G VWEWTS    PH  
Sbjct  146  AGNIWQG--ADFPNEH-AGADSFNGRTSPVGSFPPNALGLYDMAGNVWEWTSDWYKPHYS  202

Query  467  FKAMDIYPGYTADFFDGKHNIVLGGSWATHP-RIAGRTTF-VNWYQHNYPYTWAGARLVR  524
            F     Y   + D F G + +V GGSWA        R  F  N           G RLVR
Sbjct  203  FAP---YDELSRDNFGGGYRVVRGGSWACSVYPSRLRPAFRGNCQTPGTRADDVGFRLVR  259



Lambda      K        H        a         alpha
   0.318    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00013054

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460391 pfam01940, DUF92, Integral membrane protein DUF92. Mem...  180     8e-58


>CDD:460391 pfam01940, DUF92, Integral membrane protein DUF92.  Members of 
this family have several predicted transmembrane helices. 
The function of these prokaryotic proteins is unknown.
Length=237

 Score = 180 bits (459),  Expect = 8e-58, Method: Composition-based stats.
 Identities = 82/191 (43%), Positives = 105/191 (55%), Gaps = 19/191 (10%)

Query  8    PAVLALAHRAWSRKTLTPLGIITAVLTAIAHVLHPWS-TPFALLAVFYLGGSKVTKVKHE  66
               L LA+ A+ +K+LTP G + AVL      L P     F LL VF+L GS  TK K +
Sbjct  1    LLSLLLAYLAYRKKSLTPSGALAAVLVGTLIALGPGGWRWFLLLLVFFLLGSLATKYKKD  60

Query  67   VKSRLTLSATGAEGGETQRTHIQVLANSVVATVLVLLHAWVLVYGAEKEEEECFSLGRRA  126
             K+ L L    AEG    R  +QVLAN  VA +L LL+A+     +              
Sbjct  61   RKAALGL----AEGKGGARGAVQVLANGGVAALLALLYAFTYQPLS------------PL  104

Query  127  GDVLVVGNYAAVAADTFSSELGILSKSKPRLITSPTLRVVPPGTNGGVTATGLLAGLLGA  186
              +  VG+YAA  ADT++SE+G L   KPRLIT  TL+ VPPGTNGGV+  G LAGLLGA
Sbjct  105  LLLGFVGSYAAALADTWASEIGKLLSKKPRLIT--TLKPVPPGTNGGVSLLGTLAGLLGA  162

Query  187  FSIAVTSAILI  197
              I +  A+ +
Sbjct  163  LLIGLLYALGL  173



Lambda      K        H        a         alpha
   0.320    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00013055

Length=844
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462944 pfam10017, Methyltransf_33, Histidine-specific methylt...  303     5e-97
CDD:397722 pfam03781, FGE-sulfatase, Sulfatase-modifying factor e...  112     3e-28


>CDD:462944 pfam10017, Methyltransf_33, Histidine-specific methyltransferase, 
SAM-dependent.  The mycobacterial members of this family 
are expressed from part of the ergothioneine biosynthetic 
gene cluster. EGTD is the histidine methyltransferase that transfers 
three methyl groups to the alpha-amino moiety of histidine, 
in the first stage of the production of this histidine 
betaine derivative that carries a thiol group attached to 
the C2 atom of an imidazole ring.
Length=304

 Score = 303 bits (778),  Expect = 5e-97, Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 165/312 (53%), Gaps = 12/312 (4%)

Query  25   LVNEIRKGLNPPEGTPRSLPTMLLYDAQGLKLFEEITYVDEYYLTNAEIEVLQNHSKKIV  84
               ++  GL+ P   P++LP    YDA+G +LFE+IT + EYY T  EI +L+ H+ +I 
Sbjct  1    FRADVLAGLSAP---PKTLPPKYFYDARGSELFEQITELPEYYPTRTEIAILRRHAAEIA  57

Query  85   ERVPENAQLLELGSGNLRKIKILLQEFERTGKHVDYYALDLSLSELQRTFVEVSSDEYSH  144
              +P  A L+ELGSG+ RK ++LL      GK V Y  +D+S   L+ +   +++D Y  
Sbjct  58   ALIPA-AVLVELGSGSSRKTRLLLDALPAAGKPVTYVPIDISAEALEESAAALAAD-YPG  115

Query  145  VDLHGLHGTYDDALAWLSNPQNLQRPTVVMSMGSSIGNFSREGAAEFLAQFARLLKPSDL  204
            + +HGL G Y+D LA L  P     P +V+ +GS+IGNF+ + AA FL +    L P DL
Sbjct  116  LTVHGLVGDYEDGLARL--PPAGGGPRLVLFLGSTIGNFTPDEAAAFLRRIRAALGPGDL  173

Query  205  MIIGLDACTDPDKVYKAYNDSKGITQRFYENGLLHANAVLGYEAFQLSEWEVVTDYDVAG  264
            +++G+D   DP+K+  AYND+ G+T  F  N L   N  LG   F L ++E    Y+   
Sbjct  174  LLLGVDLVKDPEKLEAAYNDAAGVTAAFNLNLLRRINRELG-ADFDLDDFEHRAFYNPEE  232

Query  265  GRHRAFYSPK--QNVTIDG--VLLQKGEKLVFEEATKYSPQQREQLWRDANLVLCEELGI  320
            GR       +  Q V +    +    GE +  E + KY+ ++   L   A L + +    
Sbjct  233  GRIEMHLVSRRDQTVRVGLLTIDFAAGETIHTEISYKYTLEEFRALLAAAGLEVVKVWTD  292

Query  321  SSEEYHIHLLSP  332
                + +HLL  
Sbjct  293  PKGWFALHLLRA  304


>CDD:397722 pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. 
 This domain is found in eukaryotic proteins required for 
post-translational sulfatase modification (SUMF1). These proteins 
are associated with the rare disorder multiple sulfatase 
deficiency (MSD). The protein product of the SUMF1 gene is 
FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. 
Sulfatases are enzymes essential for degradation and 
remodelling of sulfate esters, and formylglycine (FGly), 
the key catalytic in the active site, is unique to sulfatases. 
FGE is localized to the endoplasmic reticulum (ER) and interacts 
with and modifies the unfolded form of newly synthesized 
sulfatases. FGE is a single-domain monomer with a surprising 
paucity of secondary structure that adopts a unique fold 
which is stabilized by two Ca2+ ions. The effect of all mutations 
found in MSD patients is explained by the FGE structure, 
providing a molecular basis for MSD. A redox-active disulfide 
bond is present in the active site of FGE. An oxidized 
cysteine residue, possibly cysteine sulfenic acid, has been 
detected that may allow formulation of a structure-based 
mechanism for FGly formation from cysteine residues in all sulfatases. 
In Mycobacteria and Treponema denticola this enzyme 
functions as an iron(II)-dependent oxidoreductase.
Length=259

 Score = 112 bits (282),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 74/300 (25%), Positives = 97/300 (32%), Gaps = 73/300 (24%)

Query  555  FGWDNEKPQRTITVRAFEAQAHAITNGEYAKYLQATRQRRR-PESWVLTHSDENYPISKG  613
             G DNE P   +TVR F    + +TN +YA +++AT         W       N+     
Sbjct  21   TGNDNEAPAHDVTVRPFAIDKYPVTNAQYAAFVEATGYTTEVYPQWWAEVEGANW-----  75

Query  614  VTLESSQATKDFMDNFAVRTVFGPVPLEFA-QDWPVM-ASYDELALYAEWVGC------R  665
                              R   G +       D PV   S+ +   YA W+G       R
Sbjct  76   ------------------RHPSGGLSDIDDGADHPVTGVSWYDAVAYARWLGKRTGNGYR  117

Query  666  LPTYEEVKSIYNYSAQLKETRQHEPSDHESNGVKGINRDMVTNGHSKVHQDKPRTPERQP  725
            LPT  E    + Y+A                G KG              +  P   E  P
Sbjct  118  LPTEAE----WEYAA--------------RGGSKG--------------RRYPWGDELYP  145

Query  726  IQPPSQSTMPVFVDLHGCNVGFKHWHPTPV-IQNGDRLAGHGELGGVWEWTSTPLTPHDG  784
                 Q     F + H       +   +PV     + L  +   G VWEWTS    PH  
Sbjct  146  AGNIWQG--ADFPNEH-AGADSFNGRTSPVGSFPPNALGLYDMAGNVWEWTSDWYKPHYS  202

Query  785  FKAMDIYPGYTADFFDGKHNIVLGGSWATHP-RIAGRTTF-VNWYQHNYPYTWAGARLVR  842
            F     Y   + D F G + +V GGSWA        R  F  N           G RLVR
Sbjct  203  FAP---YDELSRDNFGGGYRVVRGGSWACSVYPSRLRPAFRGNCQTPGTRADDVGFRLVR  259



Lambda      K        H        a         alpha
   0.317    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1075199986


Query= TCONS_00013056

Length=823
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462944 pfam10017, Methyltransf_33, Histidine-specific methylt...  303     4e-97
CDD:397722 pfam03781, FGE-sulfatase, Sulfatase-modifying factor e...  99.9    8e-24


>CDD:462944 pfam10017, Methyltransf_33, Histidine-specific methyltransferase, 
SAM-dependent.  The mycobacterial members of this family 
are expressed from part of the ergothioneine biosynthetic 
gene cluster. EGTD is the histidine methyltransferase that transfers 
three methyl groups to the alpha-amino moiety of histidine, 
in the first stage of the production of this histidine 
betaine derivative that carries a thiol group attached to 
the C2 atom of an imidazole ring.
Length=304

 Score = 303 bits (778),  Expect = 4e-97, Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 165/312 (53%), Gaps = 12/312 (4%)

Query  25   LVNEIRKGLNPPEGTPRSLPTMLLYDAQGLKLFEEITYVDEYYLTNAEIEVLQNHSKKIV  84
               ++  GL+ P   P++LP    YDA+G +LFE+IT + EYY T  EI +L+ H+ +I 
Sbjct  1    FRADVLAGLSAP---PKTLPPKYFYDARGSELFEQITELPEYYPTRTEIAILRRHAAEIA  57

Query  85   ERVPENAQLLELGSGNLRKIKILLQEFERTGKHVDYYALDLSLSELQRTFVEVSSDEYSH  144
              +P  A L+ELGSG+ RK ++LL      GK V Y  +D+S   L+ +   +++D Y  
Sbjct  58   ALIPA-AVLVELGSGSSRKTRLLLDALPAAGKPVTYVPIDISAEALEESAAALAAD-YPG  115

Query  145  VDLHGLHGTYDDALAWLSNPQNLQRPTVVMSMGSSIGNFSREGAAEFLAQFARLLKPSDL  204
            + +HGL G Y+D LA L  P     P +V+ +GS+IGNF+ + AA FL +    L P DL
Sbjct  116  LTVHGLVGDYEDGLARL--PPAGGGPRLVLFLGSTIGNFTPDEAAAFLRRIRAALGPGDL  173

Query  205  MIIGLDACTDPDKVYKAYNDSKGITQRFYENGLLHANAVLGYEAFQLSEWEVVTDYDVAG  264
            +++G+D   DP+K+  AYND+ G+T  F  N L   N  LG   F L ++E    Y+   
Sbjct  174  LLLGVDLVKDPEKLEAAYNDAAGVTAAFNLNLLRRINRELG-ADFDLDDFEHRAFYNPEE  232

Query  265  GRHRAFYSPK--QNVTIDG--VLLQKGEKLVFEEATKYSPQQREQLWRDANLVLCEELGI  320
            GR       +  Q V +    +    GE +  E + KY+ ++   L   A L + +    
Sbjct  233  GRIEMHLVSRRDQTVRVGLLTIDFAAGETIHTEISYKYTLEEFRALLAAAGLEVVKVWTD  292

Query  321  SSEEYHIHLLSP  332
                + +HLL  
Sbjct  293  PKGWFALHLLRA  304


>CDD:397722 pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. 
 This domain is found in eukaryotic proteins required for 
post-translational sulfatase modification (SUMF1). These proteins 
are associated with the rare disorder multiple sulfatase 
deficiency (MSD). The protein product of the SUMF1 gene is 
FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. 
Sulfatases are enzymes essential for degradation and 
remodelling of sulfate esters, and formylglycine (FGly), 
the key catalytic in the active site, is unique to sulfatases. 
FGE is localized to the endoplasmic reticulum (ER) and interacts 
with and modifies the unfolded form of newly synthesized 
sulfatases. FGE is a single-domain monomer with a surprising 
paucity of secondary structure that adopts a unique fold 
which is stabilized by two Ca2+ ions. The effect of all mutations 
found in MSD patients is explained by the FGE structure, 
providing a molecular basis for MSD. A redox-active disulfide 
bond is present in the active site of FGE. An oxidized 
cysteine residue, possibly cysteine sulfenic acid, has been 
detected that may allow formulation of a structure-based 
mechanism for FGly formation from cysteine residues in all sulfatases. 
In Mycobacteria and Treponema denticola this enzyme 
functions as an iron(II)-dependent oxidoreductase.
Length=259

 Score = 99.9 bits (249),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 89/271 (33%), Gaps = 71/271 (26%)

Query  555  FGWDNEKPQRTITVRAFEAQAHAITNGEYAKYLQATRQRRR-PESWVLTHSDENYPISKG  613
             G DNE P   +TVR F    + +TN +YA +++AT         W       N+     
Sbjct  21   TGNDNEAPAHDVTVRPFAIDKYPVTNAQYAAFVEATGYTTEVYPQWWAEVEGANW-----  75

Query  614  VTLESSQATKDFMDNFAVRTVFGPVPLEFA-QDWPVM-ASYDELALYAEWVGC------R  665
                              R   G +       D PV   S+ +   YA W+G       R
Sbjct  76   ------------------RHPSGGLSDIDDGADHPVTGVSWYDAVAYARWLGKRTGNGYR  117

Query  666  LPTYEEVKSIYNYSAQLKETRQHEPSDHESNGVKGINRDMVTNGHSKVHQDKPRTPERQP  725
            LPT  E    + Y+A                G KG              +  P   E  P
Sbjct  118  LPTEAE----WEYAA--------------RGGSKG--------------RRYPWGDELYP  145

Query  726  IQPPSQSTMPVFVDLHGCNVGFKHWHPTPV-IQNGDRLAGHGELGGVWEWTSTPLTPHDG  784
                 Q     F + H       +   +PV     + L  +   G VWEWTS    PH  
Sbjct  146  AGNIWQG--ADFPNEH-AGADSFNGRTSPVGSFPPNALGLYDMAGNVWEWTSDWYKPHYS  202

Query  785  FKAMDIYPGYTADFFDGKHNIVLGGSWATHP  815
            F     Y   + D F G + +V GGSWA   
Sbjct  203  FAP---YDELSRDNFGGGYRVVRGGSWACSV  230



Lambda      K        H        a         alpha
   0.317    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1045054192


Query= TCONS_00018611

Length=823
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462944 pfam10017, Methyltransf_33, Histidine-specific methylt...  303     4e-97
CDD:397722 pfam03781, FGE-sulfatase, Sulfatase-modifying factor e...  99.9    8e-24


>CDD:462944 pfam10017, Methyltransf_33, Histidine-specific methyltransferase, 
SAM-dependent.  The mycobacterial members of this family 
are expressed from part of the ergothioneine biosynthetic 
gene cluster. EGTD is the histidine methyltransferase that transfers 
three methyl groups to the alpha-amino moiety of histidine, 
in the first stage of the production of this histidine 
betaine derivative that carries a thiol group attached to 
the C2 atom of an imidazole ring.
Length=304

 Score = 303 bits (778),  Expect = 4e-97, Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 165/312 (53%), Gaps = 12/312 (4%)

Query  25   LVNEIRKGLNPPEGTPRSLPTMLLYDAQGLKLFEEITYVDEYYLTNAEIEVLQNHSKKIV  84
               ++  GL+ P   P++LP    YDA+G +LFE+IT + EYY T  EI +L+ H+ +I 
Sbjct  1    FRADVLAGLSAP---PKTLPPKYFYDARGSELFEQITELPEYYPTRTEIAILRRHAAEIA  57

Query  85   ERVPENAQLLELGSGNLRKIKILLQEFERTGKHVDYYALDLSLSELQRTFVEVSSDEYSH  144
              +P  A L+ELGSG+ RK ++LL      GK V Y  +D+S   L+ +   +++D Y  
Sbjct  58   ALIPA-AVLVELGSGSSRKTRLLLDALPAAGKPVTYVPIDISAEALEESAAALAAD-YPG  115

Query  145  VDLHGLHGTYDDALAWLSNPQNLQRPTVVMSMGSSIGNFSREGAAEFLAQFARLLKPSDL  204
            + +HGL G Y+D LA L  P     P +V+ +GS+IGNF+ + AA FL +    L P DL
Sbjct  116  LTVHGLVGDYEDGLARL--PPAGGGPRLVLFLGSTIGNFTPDEAAAFLRRIRAALGPGDL  173

Query  205  MIIGLDACTDPDKVYKAYNDSKGITQRFYENGLLHANAVLGYEAFQLSEWEVVTDYDVAG  264
            +++G+D   DP+K+  AYND+ G+T  F  N L   N  LG   F L ++E    Y+   
Sbjct  174  LLLGVDLVKDPEKLEAAYNDAAGVTAAFNLNLLRRINRELG-ADFDLDDFEHRAFYNPEE  232

Query  265  GRHRAFYSPK--QNVTIDG--VLLQKGEKLVFEEATKYSPQQREQLWRDANLVLCEELGI  320
            GR       +  Q V +    +    GE +  E + KY+ ++   L   A L + +    
Sbjct  233  GRIEMHLVSRRDQTVRVGLLTIDFAAGETIHTEISYKYTLEEFRALLAAAGLEVVKVWTD  292

Query  321  SSEEYHIHLLSP  332
                + +HLL  
Sbjct  293  PKGWFALHLLRA  304


>CDD:397722 pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. 
 This domain is found in eukaryotic proteins required for 
post-translational sulfatase modification (SUMF1). These proteins 
are associated with the rare disorder multiple sulfatase 
deficiency (MSD). The protein product of the SUMF1 gene is 
FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. 
Sulfatases are enzymes essential for degradation and 
remodelling of sulfate esters, and formylglycine (FGly), 
the key catalytic in the active site, is unique to sulfatases. 
FGE is localized to the endoplasmic reticulum (ER) and interacts 
with and modifies the unfolded form of newly synthesized 
sulfatases. FGE is a single-domain monomer with a surprising 
paucity of secondary structure that adopts a unique fold 
which is stabilized by two Ca2+ ions. The effect of all mutations 
found in MSD patients is explained by the FGE structure, 
providing a molecular basis for MSD. A redox-active disulfide 
bond is present in the active site of FGE. An oxidized 
cysteine residue, possibly cysteine sulfenic acid, has been 
detected that may allow formulation of a structure-based 
mechanism for FGly formation from cysteine residues in all sulfatases. 
In Mycobacteria and Treponema denticola this enzyme 
functions as an iron(II)-dependent oxidoreductase.
Length=259

 Score = 99.9 bits (249),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 89/271 (33%), Gaps = 71/271 (26%)

Query  555  FGWDNEKPQRTITVRAFEAQAHAITNGEYAKYLQATRQRRR-PESWVLTHSDENYPISKG  613
             G DNE P   +TVR F    + +TN +YA +++AT         W       N+     
Sbjct  21   TGNDNEAPAHDVTVRPFAIDKYPVTNAQYAAFVEATGYTTEVYPQWWAEVEGANW-----  75

Query  614  VTLESSQATKDFMDNFAVRTVFGPVPLEFA-QDWPVM-ASYDELALYAEWVGC------R  665
                              R   G +       D PV   S+ +   YA W+G       R
Sbjct  76   ------------------RHPSGGLSDIDDGADHPVTGVSWYDAVAYARWLGKRTGNGYR  117

Query  666  LPTYEEVKSIYNYSAQLKETRQHEPSDHESNGVKGINRDMVTNGHSKVHQDKPRTPERQP  725
            LPT  E    + Y+A                G KG              +  P   E  P
Sbjct  118  LPTEAE----WEYAA--------------RGGSKG--------------RRYPWGDELYP  145

Query  726  IQPPSQSTMPVFVDLHGCNVGFKHWHPTPV-IQNGDRLAGHGELGGVWEWTSTPLTPHDG  784
                 Q     F + H       +   +PV     + L  +   G VWEWTS    PH  
Sbjct  146  AGNIWQG--ADFPNEH-AGADSFNGRTSPVGSFPPNALGLYDMAGNVWEWTSDWYKPHYS  202

Query  785  FKAMDIYPGYTADFFDGKHNIVLGGSWATHP  815
            F     Y   + D F G + +V GGSWA   
Sbjct  203  FAP---YDELSRDNFGGGYRVVRGGSWACSV  230



Lambda      K        H        a         alpha
   0.317    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1045054192


Query= TCONS_00013057

Length=844
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462944 pfam10017, Methyltransf_33, Histidine-specific methylt...  303     5e-97
CDD:397722 pfam03781, FGE-sulfatase, Sulfatase-modifying factor e...  111     1e-27


>CDD:462944 pfam10017, Methyltransf_33, Histidine-specific methyltransferase, 
SAM-dependent.  The mycobacterial members of this family 
are expressed from part of the ergothioneine biosynthetic 
gene cluster. EGTD is the histidine methyltransferase that transfers 
three methyl groups to the alpha-amino moiety of histidine, 
in the first stage of the production of this histidine 
betaine derivative that carries a thiol group attached to 
the C2 atom of an imidazole ring.
Length=304

 Score = 303 bits (779),  Expect = 5e-97, Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 165/312 (53%), Gaps = 12/312 (4%)

Query  25   LVNEIRKGLNPPEGTPRSLPTMLLYDAQGLKLFEEITYVDEYYLTNAEIEVLQNHSKKIV  84
               ++  GL+ P   P++LP    YDA+G +LFE+IT + EYY T  EI +L+ H+ +I 
Sbjct  1    FRADVLAGLSAP---PKTLPPKYFYDARGSELFEQITELPEYYPTRTEIAILRRHAAEIA  57

Query  85   ERVPENAQLLELGSGNLRKIKILLQEFERTGKHVDYYALDLSLSELQRTFVEVSSDEYSH  144
              +P  A L+ELGSG+ RK ++LL      GK V Y  +D+S   L+ +   +++D Y  
Sbjct  58   ALIPA-AVLVELGSGSSRKTRLLLDALPAAGKPVTYVPIDISAEALEESAAALAAD-YPG  115

Query  145  VDLHGLHGTYDDALAWLSNPQNLQRPTVVMSMGSSIGNFSREGAAEFLAQFARLLKPSDL  204
            + +HGL G Y+D LA L  P     P +V+ +GS+IGNF+ + AA FL +    L P DL
Sbjct  116  LTVHGLVGDYEDGLARL--PPAGGGPRLVLFLGSTIGNFTPDEAAAFLRRIRAALGPGDL  173

Query  205  MIIGLDACTDPDKVYKAYNDSKGITQRFYENGLLHANAVLGYEAFQLSEWEVVTDYDVAG  264
            +++G+D   DP+K+  AYND+ G+T  F  N L   N  LG   F L ++E    Y+   
Sbjct  174  LLLGVDLVKDPEKLEAAYNDAAGVTAAFNLNLLRRINRELG-ADFDLDDFEHRAFYNPEE  232

Query  265  GRHRAFYSPK--QNVTIDG--VLLQKGEKLVFEEATKYSPQQREQLWRDANLVLCEELGI  320
            GR       +  Q V +    +    GE +  E + KY+ ++   L   A L + +    
Sbjct  233  GRIEMHLVSRRDQTVRVGLLTIDFAAGETIHTEISYKYTLEEFRALLAAAGLEVVKVWTD  292

Query  321  SSEEYHIHLLSP  332
                + +HLL  
Sbjct  293  PKGWFALHLLRA  304


>CDD:397722 pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. 
 This domain is found in eukaryotic proteins required for 
post-translational sulfatase modification (SUMF1). These proteins 
are associated with the rare disorder multiple sulfatase 
deficiency (MSD). The protein product of the SUMF1 gene is 
FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. 
Sulfatases are enzymes essential for degradation and 
remodelling of sulfate esters, and formylglycine (FGly), 
the key catalytic in the active site, is unique to sulfatases. 
FGE is localized to the endoplasmic reticulum (ER) and interacts 
with and modifies the unfolded form of newly synthesized 
sulfatases. FGE is a single-domain monomer with a surprising 
paucity of secondary structure that adopts a unique fold 
which is stabilized by two Ca2+ ions. The effect of all mutations 
found in MSD patients is explained by the FGE structure, 
providing a molecular basis for MSD. A redox-active disulfide 
bond is present in the active site of FGE. An oxidized 
cysteine residue, possibly cysteine sulfenic acid, has been 
detected that may allow formulation of a structure-based 
mechanism for FGly formation from cysteine residues in all sulfatases. 
In Mycobacteria and Treponema denticola this enzyme 
functions as an iron(II)-dependent oxidoreductase.
Length=259

 Score = 111 bits (278),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 75/303 (25%), Positives = 98/303 (32%), Gaps = 79/303 (26%)

Query  555  FGWDNEKPQRTITVRAFEAQAHAITNGEYAKYLQATRQRRR-PESWVLTHSDENYPISKG  613
             G DNE P   +TVR F    + +TN +YA +++AT         W       N+     
Sbjct  21   TGNDNEAPAHDVTVRPFAIDKYPVTNAQYAAFVEATGYTTEVYPQWWAEVEGANW-----  75

Query  614  VTLESSQATKDFMDNFAVRTVFGPVPLEFA-QDWPVM-ASYDELALYAEWVGC------R  665
                              R   G +       D PV   S+ +   YA W+G       R
Sbjct  76   ------------------RHPSGGLSDIDDGADHPVTGVSWYDAVAYARWLGKRTGNGYR  117

Query  666  LPTYEEVKSIYNYSAQLKETRQHEPSDHESNGVKGINRDMVTNGHSKVHQDKPRTPERQP  725
            LPT  E    + Y+A                G KG              +  P   E  P
Sbjct  118  LPTEAE----WEYAA--------------RGGSKG--------------RRYPWGDELYP  145

Query  726  IQPPSQSTMPVFVDLHGCNVGFKHWHPTPV-IQNGDRLAGHGELGGVWEWTSTPLTPHDG  784
                 Q     F + H       +   +PV     + L  +   G VWEWTS    PH  
Sbjct  146  AGNIWQG--ADFPNEH-AGADSFNGRTSPVGSFPPNALGLYDMAGNVWEWTSDWYKPHYS  202

Query  785  FKAMDIYPGYTGDFFDGKHNIVLGGSWATHP-----RIAGRTTLVNWYQHNYPYTWAGAR  839
            F     Y   + D F G + +V GGSWA        R A R    N           G R
Sbjct  203  FAP---YDELSRDNFGGGYRVVRGGSWACSVYPSRLRPAFRG---NCQTPGTRADDVGFR  256

Query  840  LVR  842
            LVR
Sbjct  257  LVR  259



Lambda      K        H        a         alpha
   0.317    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1075199986


Query= TCONS_00013058

Length=79
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  112     1e-31


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 112 bits (282),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 34/80 (43%), Positives = 53/80 (66%), Gaps = 1/80 (1%)

Query  1    MRVMTEETFGPVLPVMKVESDEEAVKLMNDSEFGLTASIWTKDVPRAEDLIEQVEAGTVF  60
            MR+  EE FGPVL V++ + +EEA+++ ND+E+GL A ++T D+ RA  +  ++EAG V+
Sbjct  360  MRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVW  419

Query  61   INRSDYPSPD-LAWTGWKNS  79
            IN       D L + G+K S
Sbjct  420  INDYTTGDADGLPFGGFKQS  439



Lambda      K        H        a         alpha
   0.313    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00018612

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  107     1e-28


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 107 bits (269),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 0/74 (0%)

Query  1    MRVMTEETFGPVLPVMKVESDEEAVKLMNDSEFGLTASIWTKDVPRAEDLIEQVEAGTVF  60
            MR+  EE FGPVL V++ + +EEA+++ ND+E+GL A ++T D+ RA  +  ++EAG V+
Sbjct  360  MRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVW  419

Query  61   INRSDYPSPVSSAH  74
            IN            
Sbjct  420  INDYTTGDADGLPF  433



Lambda      K        H        a         alpha
   0.318    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00013059

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  427     1e-147


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 427 bits (1101),  Expect = 1e-147, Method: Composition-based stats.
 Identities = 169/467 (36%), Positives = 258/467 (55%), Gaps = 18/467 (4%)

Query  2    SAEIITTISPSTNRPILTRTGMSSDEIKRIPDLAQEAFRSFSQSTTLTQRQQIVDRALAI  61
             +E I  I+P+T   I T    +++++      A+ AF ++ + T   +R  I+ +A  +
Sbjct  5    ESETIEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRK-TPAAERAAILRKAADL  63

Query  62   LEKRKDELAHQLTEQMGRPISYTGVEISTAVKRSQY----LNRIAPSVLGEEGVVSGEEE  117
            LE+RKDELA   T + G+P++    E+  A+   +Y      R+    L  +        
Sbjct  64   LEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSD--------  115

Query  118  KGFKRFIKRKPVGVVLIIFAWNYPYLVLVNSLIPAILAGNAVILKPSPQTPTVVEEVAAA  177
             G   + +R+P+GVV  I  WN+P L+    + PA+ AGN V+LKPS  TP     +A  
Sbjct  116  PGRLAYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAEL  175

Query  178  FAEAGLPKNVLQYFHCGTPEALEKLVRSPQVNHICFTGSVAGGLAVQKAASDRIVSVGLE  237
            F EAGLP  VL        E  E LV  P V  + FTGS A G  + +AA+  +  V LE
Sbjct  176  FEEAGLPAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLE  235

Query  238  LGGKDPAYVRDDVDVAWAAEEIVDGAIFNSGQSCCAIERVYVHKNIYETFVAEVKRVLSK  297
            LGGK+P  V +D D+  A E  V GA  N+GQ C A  R+ VH++IY+ FV ++     K
Sbjct  236  LGGKNPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKK  295

Query  298  YCVGDPSEKTTQIGPVISKRAKETILAHIAEAVEKGARDETPANETFDNLPADGNYVKPT  357
              VGDP +  T +GP+ISK   E +L ++ +A E+GA+  T      DN    G +V+PT
Sbjct  296  LKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLDN----GYFVEPT  351

Query  358  LLTGVNHNMRVMTEETFGPVLPVMKVESDEEAVKLMNDSEFGLTASIWTKDVPRAEDLIE  417
            +L  V  +MR+  EE FGPVL V++ + +EEA+++ ND+E+GL A ++T D+ RA  +  
Sbjct  352  VLANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVAR  411

Query  418  QVEAGTVFINRSDYPSPD-LAWTGWKNSGRGVTLSKFGFEQFVKLKS  463
            ++EAG V+IN       D L + G+K SG G     +G E++ ++K+
Sbjct  412  RLEAGMVWINDYTTGDADGLPFGGFKQSGFGREGGPYGLEEYTEVKT  458



Lambda      K        H        a         alpha
   0.316    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00013063

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  177     5e-54


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 177 bits (451),  Expect = 5e-54, Method: Composition-based stats.
 Identities = 84/325 (26%), Positives = 129/325 (40%), Gaps = 91/325 (28%)

Query  77   AMGIIVGTGCNATIPMKLESLHESKAEHVKSKIPEAKETIVNTEWTISGASPPLKELNII  136
             +G+I+GTG NA    K+ ++       ++ K+P++ E I+NTEW   G +  L      
Sbjct  1    RIGLILGTGTNAAYVEKVSNIP-----KLEGKLPKSGEMIINTEWGAFGDNGLL--PLPR  53

Query  137  TKWDEELDKACARPGFQPFEYMTGGRYIGELIRLILFDYLTNIVGLEKKQLPATLVQEYA  196
            T++D+ELD     PGFQPFE M  G Y+GEL+RL+L D L     L K Q    L   Y+
Sbjct  54   TEYDKELDAESPNPGFQPFEKMISGMYLGELVRLVLLD-LAEEGLLFKGQSEK-LKTPYS  111

Query  197  LTTSYISDKVARPQRD-EDLAAELNQSL-PPPESCEWCWDSLTAGAFRKIARVVQTRSAG  254
            L TS++S   + P  D E     L + L     + E           R+I   V TR+A 
Sbjct  112  LDTSFLSAIESDPSEDLETTREILEELLGIETVTEE------DRKIVRRICEAVSTRAAR  165

Query  255  LIAAAVVGLLACAQEIELKVDSNENSPQSSTAASPQRYGSANLQASLDETTSSSLEAGAA  314
            L+AA +  +L                         ++ G                     
Sbjct  166  LVAAGIAAIL-------------------------KKIGRD-------------------  181

Query  315  RNGQRPIVPVLLPTQTPADWQSGPEELVVAYTGGIIQHYPNFKETCQQYIDRLIMRTGPQ  374
                                    +++ V   G + + YP F+E  Q+ +  L+      
Sbjct  182  ------------------------KKVTVGVDGSVYEKYPGFRERLQEALRELL------  211

Query  375  KSGKSVFLREASDGGVIGAGVLAGM  399
              G  V L  A DG  +GA ++A +
Sbjct  212  GPGDKVVLVLAEDGSGVGAALIAAV  236



Lambda      K        H        a         alpha
   0.314    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0757    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00013064

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.511    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00018613

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00013065

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461028 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2....  177     5e-54


>CDD:461028 pfam03727, Hexokinase_2, Hexokinase.  Hexokinase (EC:2.7.1.1) 
contains two structurally similar domains represented by this 
family and pfam00349. Some members of the family have two 
copies of each of these domains.
Length=236

 Score = 177 bits (451),  Expect = 5e-54, Method: Composition-based stats.
 Identities = 84/325 (26%), Positives = 129/325 (40%), Gaps = 91/325 (28%)

Query  77   AMGIIVGTGCNATIPMKLESLHESKAEHVKSKIPEAKETIVNTEWTISGASPPLKELNII  136
             +G+I+GTG NA    K+ ++       ++ K+P++ E I+NTEW   G +  L      
Sbjct  1    RIGLILGTGTNAAYVEKVSNIP-----KLEGKLPKSGEMIINTEWGAFGDNGLL--PLPR  53

Query  137  TKWDEELDKACARPGFQPFEYMTGGRYIGELIRLILFDYLTNIVGLEKKQLPATLVQEYA  196
            T++D+ELD     PGFQPFE M  G Y+GEL+RL+L D L     L K Q    L   Y+
Sbjct  54   TEYDKELDAESPNPGFQPFEKMISGMYLGELVRLVLLD-LAEEGLLFKGQSEK-LKTPYS  111

Query  197  LTTSYISDKVARPQRD-EDLAAELNQSL-PPPESCEWCWDSLTAGAFRKIARVVQTRSAG  254
            L TS++S   + P  D E     L + L     + E           R+I   V TR+A 
Sbjct  112  LDTSFLSAIESDPSEDLETTREILEELLGIETVTEE------DRKIVRRICEAVSTRAAR  165

Query  255  LIAAAVVGLLACAQEIELKVDSNENSPQSSTAASPQRYGSANLQASLDETTSSSLEAGAA  314
            L+AA +  +L                         ++ G                     
Sbjct  166  LVAAGIAAIL-------------------------KKIGRD-------------------  181

Query  315  RNGQRPIVPVLLPTQTPADWQSGPEELVVAYTGGIIQHYPNFKETCQQYIDRLIMRTGPQ  374
                                    +++ V   G + + YP F+E  Q+ +  L+      
Sbjct  182  ------------------------KKVTVGVDGSVYEKYPGFRERLQEALRELL------  211

Query  375  KSGKSVFLREASDGGVIGAGVLAGM  399
              G  V L  A DG  +GA ++A +
Sbjct  212  GPGDKVVLVLAEDGSGVGAALIAAV  236



Lambda      K        H        a         alpha
   0.314    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00013066

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00013067

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00013071

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00013069

Length=182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460853 pfam03227, GILT, Gamma interferon inducible lysosomal ...  59.7    1e-12


>CDD:460853 pfam03227, GILT, Gamma interferon inducible lysosomal thiol reductase 
(GILT).  This family includes the two characterized 
human gamma-interferon-inducible lysosomal thiol reductase 
(GILT) sequences. It also contains several other eukaryotic 
putative proteins with similarity to GILT. The aligned region 
contains three conserved cysteine residues. In addition, the 
two GILT sequences possess a C-X(2)-C motif that is shared 
by some of the other sequences in the family. This motif is 
thought to be associated with disulphide bond reduction.
Length=102

 Score = 59.7 bits (145),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 23/72 (32%), Positives = 37/72 (51%), Gaps = 7/72 (10%)

Query  114  HVMSKCPDARDCLQKLVVPAME-QISDKVD-----FGLAFIASVSNKSTDVVCKHGPAEC  167
            +  S CPD+R  + + ++P    ++ D +D     FG A + S  +      C+HGP EC
Sbjct  3    YYESLCPDSRRFITQQLLPTYRLKLQDIMDLTLVPFGKAKVNSSGSGWG-FTCQHGPEEC  61

Query  168  IGDMLILCAANL  179
            +G+ L  CA  L
Sbjct  62   LGNKLQACAIKL  73



Lambda      K        H        a         alpha
   0.321    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00013070

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460853 pfam03227, GILT, Gamma interferon inducible lysosomal ...  65.0    1e-14


>CDD:460853 pfam03227, GILT, Gamma interferon inducible lysosomal thiol reductase 
(GILT).  This family includes the two characterized 
human gamma-interferon-inducible lysosomal thiol reductase 
(GILT) sequences. It also contains several other eukaryotic 
putative proteins with similarity to GILT. The aligned region 
contains three conserved cysteine residues. In addition, the 
two GILT sequences possess a C-X(2)-C motif that is shared 
by some of the other sequences in the family. This motif is 
thought to be associated with disulphide bond reduction.
Length=102

 Score = 65.0 bits (159),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query  114  HVMSKCPDARDCLQKLVVPAME-QISDKVD-----FGLAFIASVSNKSTDVVCKHGPAEC  167
            +  S CPD+R  + + ++P    ++ D +D     FG A + S  +      C+HGP EC
Sbjct  3    YYESLCPDSRRFITQQLLPTYRLKLQDIMDLTLVPFGKAKVNSSGSGWG-FTCQHGPEEC  61

Query  168  IGDMLILCAANLPFPPEGRSMPRTPTIRSLGFANCLISSY  207
            +G+ L  CA  L               ++L F  C+ SS 
Sbjct  62   LGNKLQACAIKL----------LPDQDQALPFIACMESSN  91



Lambda      K        H        a         alpha
   0.320    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00013068

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460853 pfam03227, GILT, Gamma interferon inducible lysosomal ...  69.3    1e-15


>CDD:460853 pfam03227, GILT, Gamma interferon inducible lysosomal thiol reductase 
(GILT).  This family includes the two characterized 
human gamma-interferon-inducible lysosomal thiol reductase 
(GILT) sequences. It also contains several other eukaryotic 
putative proteins with similarity to GILT. The aligned region 
contains three conserved cysteine residues. In addition, the 
two GILT sequences possess a C-X(2)-C motif that is shared 
by some of the other sequences in the family. This motif is 
thought to be associated with disulphide bond reduction.
Length=102

 Score = 69.3 bits (170),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 20/113 (18%)

Query  114  HVMSKCPDARDCLQKLVVPAME-QISDKVD-----FGLAFIASVSNKSTDVVCKHGPAEC  167
            +  S CPD+R  + + ++P    ++ D +D     FG A + S  +      C+HGP EC
Sbjct  3    YYESLCPDSRRFITQQLLPTYRLKLQDIMDLTLVPFGKAKVNSSGSGWG-FTCQHGPEEC  61

Query  168  IGDMLILCAANLPFPPEGRSMPRTPTIRSLGFANCLISSYEKIPERSFVEQCA  220
            +G+ L  CA  L               ++L F  C+ SS +        E+CA
Sbjct  62   LGNKLQACAIKL----------LPDQDQALPFIACMESSNDP---DEAAEKCA  101



Lambda      K        H        a         alpha
   0.319    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00013072

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00018615

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00018616

Length=186
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460853 pfam03227, GILT, Gamma interferon inducible lysosomal ...  60.0    8e-13


>CDD:460853 pfam03227, GILT, Gamma interferon inducible lysosomal thiol reductase 
(GILT).  This family includes the two characterized 
human gamma-interferon-inducible lysosomal thiol reductase 
(GILT) sequences. It also contains several other eukaryotic 
putative proteins with similarity to GILT. The aligned region 
contains three conserved cysteine residues. In addition, the 
two GILT sequences possess a C-X(2)-C motif that is shared 
by some of the other sequences in the family. This motif is 
thought to be associated with disulphide bond reduction.
Length=102

 Score = 60.0 bits (146),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 23/72 (32%), Positives = 37/72 (51%), Gaps = 7/72 (10%)

Query  114  HVMSKCPDARDCLQKLVVPAME-QISDKVD-----FGLAFIASVSNKSTDVVCKHGPAEC  167
            +  S CPD+R  + + ++P    ++ D +D     FG A + S  +      C+HGP EC
Sbjct  3    YYESLCPDSRRFITQQLLPTYRLKLQDIMDLTLVPFGKAKVNSSGSGWG-FTCQHGPEEC  61

Query  168  IGDMLILCAANL  179
            +G+ L  CA  L
Sbjct  62   LGNKLQACAIKL  73



Lambda      K        H        a         alpha
   0.320    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00018617

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460853 pfam03227, GILT, Gamma interferon inducible lysosomal ...  60.4    6e-13


>CDD:460853 pfam03227, GILT, Gamma interferon inducible lysosomal thiol reductase 
(GILT).  This family includes the two characterized 
human gamma-interferon-inducible lysosomal thiol reductase 
(GILT) sequences. It also contains several other eukaryotic 
putative proteins with similarity to GILT. The aligned region 
contains three conserved cysteine residues. In addition, the 
two GILT sequences possess a C-X(2)-C motif that is shared 
by some of the other sequences in the family. This motif is 
thought to be associated with disulphide bond reduction.
Length=102

 Score = 60.4 bits (147),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 8/82 (10%)

Query  114  HVMSKCPDARDCLQKLVVPAME-QISDKVD-----FGLAFIASVSNKSTDVVCKHGPAEC  167
            +  S CPD+R  + + ++P    ++ D +D     FG A + S  +      C+HGP EC
Sbjct  3    YYESLCPDSRRFITQQLLPTYRLKLQDIMDLTLVPFGKAKVNSSGSGWG-FTCQHGPEEC  61

Query  168  IGDMLILCAANLPFPPEGRSMP  189
            +G+ L  CA  L  P + +++P
Sbjct  62   LGNKLQACAIKL-LPDQDQALP  82



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00013073

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460853 pfam03227, GILT, Gamma interferon inducible lysosomal ...  69.3    2e-15


>CDD:460853 pfam03227, GILT, Gamma interferon inducible lysosomal thiol reductase 
(GILT).  This family includes the two characterized 
human gamma-interferon-inducible lysosomal thiol reductase 
(GILT) sequences. It also contains several other eukaryotic 
putative proteins with similarity to GILT. The aligned region 
contains three conserved cysteine residues. In addition, the 
two GILT sequences possess a C-X(2)-C motif that is shared 
by some of the other sequences in the family. This motif is 
thought to be associated with disulphide bond reduction.
Length=102

 Score = 69.3 bits (170),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 20/113 (18%)

Query  114  HVMSKCPDARDCLQKLVVPAME-QISDKVD-----FGLAFIASVSNKSTDVVCKHGPAEC  167
            +  S CPD+R  + + ++P    ++ D +D     FG A + S  +      C+HGP EC
Sbjct  3    YYESLCPDSRRFITQQLLPTYRLKLQDIMDLTLVPFGKAKVNSSGSGWG-FTCQHGPEEC  61

Query  168  IGDMLILCAANLPFPPEGRSMPRTPTIRSLGFANCLISSYEKIPERSFVEQCA  220
            +G+ L  CA  L               ++L F  C+ SS +        E+CA
Sbjct  62   LGNKLQACAIKL----------LPDQDQALPFIACMESSNDP---DEAAEKCA  101



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00013074

Length=367


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00013075

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            114     2e-28


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 114 bits (287),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 79/367 (22%), Positives = 122/367 (33%), Gaps = 39/367 (11%)

Query  145  IGNAKIAGLMDDLRLSSSQYEWLLTAFYITYILFE--WMTLMYRIVSPHIYISLCVCGWG  202
            +G A    L +DL +S ++   LLT F + Y L +     L  R       + + +  + 
Sbjct  15   LGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRF-GRRRVLLIGLLLFA  73

Query  203  LVASFQSLATSFSTLVVLRAFLGITEAAFGPGVPFYLSLFYKREELALRNGLFISAAPLA  262
            L       A+S   L+VLR   G+   A  P     ++ ++  EE     GL  +   L 
Sbjct  74   LGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLG  133

Query  263  TSFASSLAWLIVKVSSNGPIAPWRTLFLVEGFPSVFVAVFAWILIPDSPESARFLEPRER  322
             +    L  L+  +        WR  FL+    S+  AV   +  P             R
Sbjct  134  AALGPLLGGLLASLFG------WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEAR  187

Query  323  MVAKLRLGETRSDYCGPDSRKFNWREVAKALSDPKSYVTAFMFFSCNVAFSSMPVFLPTI  382
            +   +                       KAL                 AF  +  +LP  
Sbjct  188  LSLIVAW---------------------KALLRDPVLWLLLALLLFGFAFFGLLTYLPLY  226

Query  383  IEDMGYSSLSAQALCAPPYLIAFMVVLATAYLSDRHRSRSPYLIAHALISSFAYLAIAAT  442
             E +G S+L A  L     L+  +  L    LSDR   R   L+A  L+   A L +   
Sbjct  227  QEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLL-ILAALGLL--  283

Query  443  GYYHEHLSAGVQTFIRYACVYPATSGFFSAITLIITWTMDNRAAKEGKGASMAILNLIGQ  502
                  LS  + +      +     GF      +     D  A KE +G +  + N  G 
Sbjct  284  -----LLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDL-APKEERGTASGLYNTAGS  337

Query  503  CGPLLGT  509
             G  LG 
Sbjct  338  LGGALGP  344



Lambda      K        H        a         alpha
   0.322    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 738247432


Query= TCONS_00013076

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            114     2e-28


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 114 bits (287),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 79/367 (22%), Positives = 122/367 (33%), Gaps = 39/367 (11%)

Query  145  IGNAKIAGLMDDLRLSSSQYEWLLTAFYITYILFE--WMTLMYRIVSPHIYISLCVCGWG  202
            +G A    L +DL +S ++   LLT F + Y L +     L  R       + + +  + 
Sbjct  15   LGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRF-GRRRVLLIGLLLFA  73

Query  203  LVASFQSLATSFSTLVVLRAFLGITEAAFGPGVPFYLSLFYKREELALRNGLFISAAPLA  262
            L       A+S   L+VLR   G+   A  P     ++ ++  EE     GL  +   L 
Sbjct  74   LGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLG  133

Query  263  TSFASSLAWLIVKVSSNGPIAPWRTLFLVEGFPSVFVAVFAWILIPDSPESARFLEPRER  322
             +    L  L+  +        WR  FL+    S+  AV   +  P             R
Sbjct  134  AALGPLLGGLLASLFG------WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEAR  187

Query  323  MVAKLRLGETRSDYCGPDSRKFNWREVAKALSDPKSYVTAFMFFSCNVAFSSMPVFLPTI  382
            +   +                       KAL                 AF  +  +LP  
Sbjct  188  LSLIVAW---------------------KALLRDPVLWLLLALLLFGFAFFGLLTYLPLY  226

Query  383  IEDMGYSSLSAQALCAPPYLIAFMVVLATAYLSDRHRSRSPYLIAHALISSFAYLAIAAT  442
             E +G S+L A  L     L+  +  L    LSDR   R   L+A  L+   A L +   
Sbjct  227  QEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLL-ILAALGLL--  283

Query  443  GYYHEHLSAGVQTFIRYACVYPATSGFFSAITLIITWTMDNRAAKEGKGASMAILNLIGQ  502
                  LS  + +      +     GF      +     D  A KE +G +  + N  G 
Sbjct  284  -----LLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDL-APKEERGTASGLYNTAGS  337

Query  503  CGPLLGT  509
             G  LG 
Sbjct  338  LGGALGP  344



Lambda      K        H        a         alpha
   0.322    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 738247432


Query= TCONS_00013077

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            84.4    1e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 84.4 bits (209),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 9/193 (5%)

Query  145  IGNAKIAGLMDDLRLSSSQYEWLLTAFYITYILFE--WMTLMYRIVSPHIYISLCVCGWG  202
            +G A    L +DL +S ++   LLT F + Y L +     L  R       + + +  + 
Sbjct  15   LGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRF-GRRRVLLIGLLLFA  73

Query  203  LVASFQSLATSFSTLVVLRAFLGITEAAFGPGVPFYLSLFYKREELALRNGLFISAAPLA  262
            L       A+S   L+VLR   G+   A  P     ++ ++  EE     GL  +   L 
Sbjct  74   LGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLG  133

Query  263  TSFASSLAWLIVKVSSNGPIAPWRTLFLVEGFPSVFVAVFAWILIPDSPESARFLEPRER  322
             +    L  L+  +        WR  FL+    S+  AV   +  P             R
Sbjct  134  AALGPLLGGLLASLFG------WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEAR  187

Query  323  MVAKLRLGETRSD  335
            +   +       D
Sbjct  188  LSLIVAWKALLRD  200



Lambda      K        H        a         alpha
   0.319    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00018618

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            82.9    3e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 82.9 bits (205),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 48/243 (20%), Positives = 77/243 (32%), Gaps = 30/243 (12%)

Query  145  IGNAKIAGLMDDLRLSSSQYEWLLTAFYITYILFE--WMTLMYRIVSPHIYISLCVCGWG  202
            +G A    L +DL +S ++   LLT F + Y L +     L  R       + + +  + 
Sbjct  15   LGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRF-GRRRVLLIGLLLFA  73

Query  203  LVASFQSLATSFSTLVVLRAFLGITEAAFGPGVPFYLSLFYKREELALRNGLFISAAPLA  262
            L       A+S   L+VLR   G+   A  P     ++ ++  EE     GL  +   L 
Sbjct  74   LGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLG  133

Query  263  TSFASSLAWLIVKVSSNGPIAPWRTLFLVEGFPSVFVAVFAWILIPDSPESARFLEPRER  322
             +    L  L+  +        WR  FL+    S+  AV   +  P             R
Sbjct  134  AALGPLLGGLLASLFG------WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEAR  187

Query  323  MVAKLRLGETRSDYCGPDSRKFNWREVAKALSDPKSYVTAFMFFSCNVAFSSMPVFLPTI  382
            +   +                       KAL                 AF  +  +LP  
Sbjct  188  LSLIVAW---------------------KALLRDPVLWLLLALLLFGFAFFGLLTYLPLY  226

Query  383  IEE  385
             E 
Sbjct  227  QEV  229



Lambda      K        H        a         alpha
   0.320    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 459789232


Query= TCONS_00013079

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            87.1    1e-19


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 87.1 bits (216),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 43/197 (22%), Positives = 70/197 (36%), Gaps = 9/197 (5%)

Query  122  DRSNIGNAKIAGLMDDLRLSSSQYEWLLTAFYITYILFE--WMTLMYRIVSPHIYISLCV  179
             RS +G A    L +DL +S ++   LLT F + Y L +     L  R       + + +
Sbjct  11   GRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRF-GRRRVLLIGL  69

Query  180  CGWGLVASFQSLATSFSTLVVLRAFLGITEAAFGPGVPFYLSLFYKREELALRNGLFISA  239
              + L       A+S   L+VLR   G+   A  P     ++ ++  EE     GL  + 
Sbjct  70   LLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAG  129

Query  240  APLATSFASSLAWLIVKVSSNGPIAPWRTLFLVEGFPSVFVAVFAWILIPDSPESARFLE  299
              L  +    L  L+  +        WR  FL+    S+  AV   +  P          
Sbjct  130  FGLGAALGPLLGGLLASLFG------WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPA  183

Query  300  PRERMVAKLRLGETRSD  316
               R+   +       D
Sbjct  184  EEARLSLIVAWKALLRD  200



Lambda      K        H        a         alpha
   0.319    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00013078

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            87.1    1e-19


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 87.1 bits (216),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 43/197 (22%), Positives = 70/197 (36%), Gaps = 9/197 (5%)

Query  122  DRSNIGNAKIAGLMDDLRLSSSQYEWLLTAFYITYILFE--WMTLMYRIVSPHIYISLCV  179
             RS +G A    L +DL +S ++   LLT F + Y L +     L  R       + + +
Sbjct  11   GRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRF-GRRRVLLIGL  69

Query  180  CGWGLVASFQSLATSFSTLVVLRAFLGITEAAFGPGVPFYLSLFYKREELALRNGLFISA  239
              + L       A+S   L+VLR   G+   A  P     ++ ++  EE     GL  + 
Sbjct  70   LLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAG  129

Query  240  APLATSFASSLAWLIVKVSSNGPIAPWRTLFLVEGFPSVFVAVFAWILIPDSPESARFLE  299
              L  +    L  L+  +        WR  FL+    S+  AV   +  P          
Sbjct  130  FGLGAALGPLLGGLLASLFG------WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPA  183

Query  300  PRERMVAKLRLGETRSD  316
               R+   +       D
Sbjct  184  EEARLSLIVAWKALLRD  200



Lambda      K        H        a         alpha
   0.319    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00013082

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            99.8    2e-23


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 99.8 bits (249),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 79/383 (21%), Positives = 124/383 (32%), Gaps = 51/383 (13%)

Query  122  DRSNIGNAKIAGLMDDLRLSSSQYEWLLTAFYITYILFE--WMTLMYRIVSPHIYISLCV  179
             RS +G A    L +DL +S ++   LLT F + Y L +     L  R       + + +
Sbjct  11   GRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRF-GRRRVLLIGL  69

Query  180  CGWGLVASFQSLATSFSTLVVLRAFLGITEAAFGPGVPFYLSLFYKREELALRNGLFISA  239
              + L       A+S   L+VLR   G+   A  P     ++ ++  EE     GL  + 
Sbjct  70   LLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAG  129

Query  240  APLATSFASSLAWLIVKVSSNGPIAPWRTLFLVEGFPSVFVAVFAWILIPDSPESARFLE  299
              L  +    L  L+  +        WR  FL+    S+  AV   +  P          
Sbjct  130  FGLGAALGPLLGGLLASLFG------WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPA  183

Query  300  PRERMVAKLRLGETRSDYCGPDSRKFNWREVAKALSDPKSYVTALQCRFQLHACVPAHHH  359
               R+   +       D             V   L    + +      F L   +P +  
Sbjct  184  EEARLSLIVAWKALLRD------------PVLWLLL---ALLLFGFAFFGLLTYLPLYQ-  227

Query  360  RRVSPGMSNPVDQCTHFNSMGYSSLSAQALCAPPYLIAFMVVLATAYLSDRHRSRSPYLI  419
                               +G S+L A  L     L+  +  L    LSDR   R   L+
Sbjct  228  -----------------EVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLL  270

Query  420  AHALISSFAYLAIAATGYYHEHLSAGVQTFIRYACVYPATSGFFSAITLIITWTMDNRAA  479
            A  L+   A L +         LS  + +      +     GF      +     D  A 
Sbjct  271  ALLLL-ILAALGLL-------LLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDL-AP  321

Query  480  KEGKGASMAILNLIGQCGPLLGT  502
            KE +G +  + N  G  G  LG 
Sbjct  322  KEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.322    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 727786436


Query= TCONS_00013080

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            97.1    2e-22


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 97.1 bits (242),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 121/379 (32%), Gaps = 51/379 (13%)

Query  145  IGNAKIAGLMDDLRLSSSQYEWLLTAFYITYILFE--WMTLMYRIVSPHIYISLCVCGWG  202
            +G A    L +DL +S ++   LLT F + Y L +     L  R       + + +  + 
Sbjct  15   LGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRF-GRRRVLLIGLLLFA  73

Query  203  LVASFQSLATSFSTLVVLRAFLGITEAAFGPGVPFYLSLFYKREELALRNGLFISAAPLA  262
            L       A+S   L+VLR   G+   A  P     ++ ++  EE     GL  +   L 
Sbjct  74   LGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLG  133

Query  263  TSFASSLAWLIVKVSSNGPIAPWRTLFLVEGFPSVFVAVFAWILIPDSPESARFLEPRER  322
             +    L  L+  +        WR  FL+    S+  AV   +  P             R
Sbjct  134  AALGPLLGGLLASLFG------WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEAR  187

Query  323  MVAKLRLGETRSDYCGPDSRKFNWREVAKALSDPKSYVTALQCRFQLHACVPAHHHRRVS  382
            +   +                     V   L    + +      F L   +P +      
Sbjct  188  LSLIVAWKALLR------------DPVLWLLL---ALLLFGFAFFGLLTYLPLYQ-----  227

Query  383  PGMSNPVDQCTHFNSMGYSSLSAQALCAPPYLIAFMVVLATAYLSDRHRSRSPYLIAHAL  442
                           +G S+L A  L     L+  +  L    LSDR   R   L+A  L
Sbjct  228  -------------EVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLL  274

Query  443  ISSFAYLAIAATGYYHEHLSAGVQTFIRYACVYPATSGFFSAITLIITWTMDNRAAKEGK  502
            +   A L +         LS  + +      +     GF      +     D  A KE +
Sbjct  275  L-ILAALGLL-------LLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDL-APKEER  325

Query  503  GASMAILNLIGQCGPLLGT  521
            G +  + N  G  G  LG 
Sbjct  326  GTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.322    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00018619

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            89.4    4e-20


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 89.4 bits (222),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 9/193 (5%)

Query  145  IGNAKIAGLMDDLRLSSSQYEWLLTAFYITYILFE--WMTLMYRIVSPHIYISLCVCGWG  202
            +G A    L +DL +S ++   LLT F + Y L +     L  R       + + +  + 
Sbjct  15   LGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRF-GRRRVLLIGLLLFA  73

Query  203  LVASFQSLATSFSTLVVLRAFLGITEAAFGPGVPFYLSLFYKREELALRNGLFISAAPLA  262
            L       A+S   L+VLR   G+   A  P     ++ ++  EE     GL  +   L 
Sbjct  74   LGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLG  133

Query  263  TSFASSLAWLIVKVSSNGPIAPWRTLFLVEGFPSVFVAVFAWILIPDSPESARFLEPRER  322
             +    L  L+  +        WR  FL+    S+  AV   +  P             R
Sbjct  134  AALGPLLGGLLASLFG------WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEAR  187

Query  323  MVAKLRLGETRSD  335
            +   +       D
Sbjct  188  LSLIVAWKALLRD  200



Lambda      K        H        a         alpha
   0.321    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00013081

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            75.5    3e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 75.5 bits (186),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 38/184 (21%), Positives = 64/184 (35%), Gaps = 9/184 (5%)

Query  1    MDDLRLSSSQYEWLLTAFYITYILFE--WMTLMYRIVSPHIYISLCVCGWGLVASFQSLA  58
             +DL +S ++   LLT F + Y L +     L  R       + + +  + L       A
Sbjct  24   AEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRF-GRRRVLLIGLLLFALGLLLLLFA  82

Query  59   TSFSTLVVLRAFLGITEAAFGPGVPFYLSLFYKREELALRNGLFISAAPLATSFASSLAW  118
            +S   L+VLR   G+   A  P     ++ ++  EE     GL  +   L  +    L  
Sbjct  83   SSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGG  142

Query  119  LIVKVSSNGPIAPWRTLFLVEGFPSVFVAVFAWILIPDSPESARFLEPRERMVAKLRLGE  178
            L+  +        WR  FL+    S+  AV   +  P             R+   +    
Sbjct  143  LLASLFG------WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKA  196

Query  179  TRSD  182
               D
Sbjct  197  LLRD  200



Lambda      K        H        a         alpha
   0.327    0.140    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00018620

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            79.8    7e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 79.8 bits (197),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 116/369 (31%), Gaps = 49/369 (13%)

Query  1    MDDLRLSSSQYEWLLTAFYITYILFE-WMTLMYRIVSPHIYISLCVCGWGLVASFQSLAT  59
             +DL +S ++   LLT F + Y L +     +         + + +  + L       A+
Sbjct  24   AEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFAS  83

Query  60   SFSTLVVLRAFLGITEAAFGPGVPFYLSLFYKREELALRNGLFISAAPLATSFASSLAWL  119
            S   L+VLR   G+   A  P     ++ ++  EE     GL  +   L  +    L  L
Sbjct  84   SLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGL  143

Query  120  IVKVSSNGPIAPWRTLFLVEGFPSVFVAVFAWILIPDSPESARFLEPRERMVAKLRLGET  179
            +  +        WR  FL+    S+  AV   +  P             R+   +     
Sbjct  144  LASLFG------WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKAL  197

Query  180  RSDYCGPDSRKFNWREVAKALSDPKSYVTALQCRFQLHACVPAHHHRRVSPGMSNPVDQC  239
                            V   L    + +      F L   +P +                
Sbjct  198  LR------------DPVLWLLL---ALLLFGFAFFGLLTYLPLYQ---------------  227

Query  240  THFNSMGYSSLSAQALCAPPYLIAFMVVLATAYLSDRHRSRSPYLIAHALISSFAYLAIA  299
                 +G S+L A  L     L+  +  L    LSDR   R   L+A  L+   A L + 
Sbjct  228  ---EVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLL-ILAALGLL  283

Query  300  ATGYYHEHLSAGVQTFIRYACVYPATSGFFSAITLIITWTMDNRAAKEGKGASMAILNLI  359
                    LS  + +      +     GF      +     D  A KE +G +  + N  
Sbjct  284  -------LLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDL-APKEERGTASGLYNTA  335

Query  360  GQCGPLLGT  368
            G  G  LG 
Sbjct  336  GSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00013083

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            79.8    7e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 79.8 bits (197),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 116/369 (31%), Gaps = 49/369 (13%)

Query  1    MDDLRLSSSQYEWLLTAFYITYILFE-WMTLMYRIVSPHIYISLCVCGWGLVASFQSLAT  59
             +DL +S ++   LLT F + Y L +     +         + + +  + L       A+
Sbjct  24   AEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFAS  83

Query  60   SFSTLVVLRAFLGITEAAFGPGVPFYLSLFYKREELALRNGLFISAAPLATSFASSLAWL  119
            S   L+VLR   G+   A  P     ++ ++  EE     GL  +   L  +    L  L
Sbjct  84   SLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGL  143

Query  120  IVKVSSNGPIAPWRTLFLVEGFPSVFVAVFAWILIPDSPESARFLEPRERMVAKLRLGET  179
            +  +        WR  FL+    S+  AV   +  P             R+   +     
Sbjct  144  LASLFG------WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKAL  197

Query  180  RSDYCGPDSRKFNWREVAKALSDPKSYVTALQCRFQLHACVPAHHHRRVSPGMSNPVDQC  239
                            V   L    + +      F L   +P +                
Sbjct  198  LR------------DPVLWLLL---ALLLFGFAFFGLLTYLPLYQ---------------  227

Query  240  THFNSMGYSSLSAQALCAPPYLIAFMVVLATAYLSDRHRSRSPYLIAHALISSFAYLAIA  299
                 +G S+L A  L     L+  +  L    LSDR   R   L+A  L+   A L + 
Sbjct  228  ---EVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLL-ILAALGLL  283

Query  300  ATGYYHEHLSAGVQTFIRYACVYPATSGFFSAITLIITWTMDNRAAKEGKGASMAILNLI  359
                    LS  + +      +     GF      +     D  A KE +G +  + N  
Sbjct  284  -------LLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDL-APKEERGTASGLYNTA  335

Query  360  GQCGPLLGT  368
            G  G  LG 
Sbjct  336  GSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00013084

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            93.6    1e-21


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 93.6 bits (233),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 74/357 (21%), Positives = 117/357 (33%), Gaps = 37/357 (10%)

Query  1    MDDLRLSSSQYEWLLTAFYITYILFE-WMTLMYRIVSPHIYISLCVCGWGLVASFQSLAT  59
             +DL +S ++   LLT F + Y L +     +         + + +  + L       A+
Sbjct  24   AEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFAS  83

Query  60   SFSTLVVLRAFLGITEAAFGPGVPFYLSLFYKREELALRNGLFISAAPLATSFASSLAWL  119
            S   L+VLR   G+   A  P     ++ ++  EE     GL  +   L  +    L  L
Sbjct  84   SLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGL  143

Query  120  IVKVSSNGPIAPWRTLFLVEGFPSVFVAVFAWILIPDSPESARFLEPRERMVAKLRLGET  179
            +  +        WR  FL+    S+  AV   +  P             R+   +     
Sbjct  144  LASLFG------WRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAW---  194

Query  180  RSDYCGPDSRKFNWREVAKALSDPKSYVTAFMFFSCNVAFSSMPVFLPTIIEDMGYSSLS  239
                              KAL                 AF  +  +LP   E +G S+L 
Sbjct  195  ------------------KALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALL  236

Query  240  AQALCAPPYLIAFMVVLATAYLSDRHRSRSPYLIAHALISSFAYLAIAATGYYHEHLSAG  299
            A  L     L+  +  L    LSDR   R   L+A  L+   A L +         LS  
Sbjct  237  AGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLL-ILAALGLL-------LLSLT  288

Query  300  VQTFIRYACVYPATSGFFSAITLIITWTMDNRAAKEGKGASMAILNLIGQCGPLLGT  356
            + +      +     GF      +     D  A KE +G +  + N  G  G  LG 
Sbjct  289  LSSLWLLLALLLLGFGFGLVFPALNALVSDL-APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00013085

Length=144
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  137     6e-42
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  99.2    2e-27


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 137 bits (348),  Expect = 6e-42, Method: Composition-based stats.
 Identities = 52/142 (37%), Positives = 73/142 (51%), Gaps = 6/142 (4%)

Query  1    MQINYNGVFNSATAAARQMFNYQQKGSILLVASMSGLIANKGMTSPVYNSSKAAVIQLAR  60
            + +N   +F  A AA   M   ++ GSI+ ++S+             Y ++KAA+  L R
Sbjct  101  LDVNLYSLFLLAKAALPLM---KEGGSIVNLSSIGAERVVPN--YNAYGAAKAALEALTR  155

Query  61   SLAMEWGRRGIRVNSLCPGHILTPMVELVFEQNPAAKATWEAENMLGRLACPEEFRGAAL  120
             LA+E G RGIRVN++ PG I T              A  EA   LGRL  PEE   AA 
Sbjct  156  YLAVELGPRGIRVNAISPGPIKTLAAS-GIPGFDELLAAAEARAPLGRLGTPEEVANAAA  214

Query  121  FALSDASSFMTGSTMIIDGGHT  142
            F  SD +S++TG  + +DGG+T
Sbjct  215  FLASDLASYITGQVLYVDGGYT  236


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 99.2 bits (248),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query  1    MQINYNGVFNSATAAARQMFNYQQKGSILLVASMSGLIANKGMTSPVYNSSKAAVIQLAR  60
            + +N  GVFN   A    M      G I+ ++S++GL+   G     Y++SKAAVI   R
Sbjct  105  IDVNLTGVFNLTRAVLPAMIK-GSGGRIVNISSVAGLVPYPGG--SAYSASKAAVIGFTR  161

Query  61   SLAMEWGRRGIRVNSLCPGHILTPMVELVFEQNP  94
            SLA+E    GIRVN++ PG + T M + + E   
Sbjct  162  SLALELAPHGIRVNAVAPGGVDTDMTKELREDEG  195



Lambda      K        H        a         alpha
   0.319    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00013088

Length=1033
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463157 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzym...  422     1e-141
CDD:459987 pfam00899, ThiF, ThiF family. This domain is found in ...  215     3e-64 
CDD:462768 pfam09358, E1_UFD, Ubiquitin fold domain. The ubiquiti...  152     5e-44 
CDD:465054 pfam16190, E1_FCCH, Ubiquitin-activating enzyme E1 FCC...  143     4e-41 
CDD:465055 pfam16191, E1_4HB, Ubiquitin-activating enzyme E1 four...  129     3e-36 


>CDD:463157 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active 
site.  Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin 
by first adenylating with ATP its C-terminal glycine 
residue and thereafter linking this residue to the side chain 
of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester 
and free AMP. Later the ubiquitin moiety is transferred 
to a cysteine residue on one of the many forms of ubiquitin-conjugating 
enzymes (E2). This domain carries the last 
of five conserved cysteines that is part of the active site 
of the enzyme, responsible for ubiquitin thiolester complex 
formation, the active site being represented by the sequence 
motif PICTLKNFP.
Length=254

 Score = 422 bits (1087),  Expect = 1e-141, Method: Composition-based stats.
 Identities = 155/257 (60%), Positives = 181/257 (70%), Gaps = 9/257 (4%)

Query  611  PNRIEHTIAWARDLFQTFFVGPPEAVNMYLSQP-NYIEQTLKQAGNEK-QTLEHLRDFLV  668
            PN IEHTI WARD F+  FV PPE VN YL  P N+IE  LKQ G +K +TLE +R  LV
Sbjct  1    PNAIEHTIQWARDEFEGLFVQPPEEVNKYLQPPQNFIESLLKQGGGQKLETLESVRKSLV  60

Query  669  TNKPTSFDDCIIWARQQFEAQYNNAIQQLLYNFPRDSKTSSGQPFWSGPKRAPTPLKFDS  728
            T +P +F+DC+ WAR +FE  +NN I+QLLYNFP D KTSSG PFWSGPKR PTPL+FD 
Sbjct  61   TERPKTFEDCVAWARLKFEKLFNNDIKQLLYNFPPDHKTSSGAPFWSGPKRPPTPLEFDP  120

Query  729  SNPTHLAFIVAGANLHAFNYGIKNPGVDKEYYRKVVDNMIIPEFVPRSGVKIQADENEPD  788
            +NP HL F+VA ANL A  YGI     D+E   KV+  + +PEF P+SGVKIQ ++ E  
Sbjct  121  NNPLHLDFVVAAANLRAQVYGIP-GSRDREAIAKVLSKVKVPEFKPKSGVKIQVNDEEAA  179

Query  789  PNAQQSSSLDDSQEIQRLVESLPP----PESLGGFRLNPVEFEKDDDTNHHIDFITAASN  844
                 + S DD  E+  L+E LP     P SL GFRLNP+EFEKDDDTN HIDFITAASN
Sbjct  180  --DPNAESEDDEDELDELLEELPKLAVSPSSLAGFRLNPIEFEKDDDTNFHIDFITAASN  237

Query  845  LRADNYDIPQADRHKTK  861
            LRA NY IP ADRHKTK
Sbjct  238  LRARNYGIPPADRHKTK  254


>CDD:459987 pfam00899, ThiF, ThiF family.  This domain is found in ubiquitin 
activating E1 family and members of the bacterial ThiF/MoeB/HesA 
family. It is repeated in Ubiquitin-activating enzyme 
E1.
Length=238

 Score = 215 bits (549),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 75/193 (39%), Positives = 107/193 (55%), Gaps = 15/193 (8%)

Query  422  YDGQIA--VFGKEFQDKIANLTQFLVGAGAIGCETLKNWAMMGLGTGPKGKIFVTDMDQI  479
            Y  Q+A  + G++ Q+K+ N    +VGAG +G E  K  A  G+G     KI + D D +
Sbjct  1    YSRQLALPLIGEDGQEKLRNSRVLIVGAGGLGSEAAKYLARAGVG-----KITLVDFDTV  55

Query  480  ERSNLNRQFLFRSKDVGKLKSECASAAAQAMNPDLKGKIVTLRDRVGPDTEHIFNEEFWE  539
            E SNLNRQFLFR  D+GK K+E A+   + +NPD+  ++    +R+ P+      EE  +
Sbjct  56   ELSNLNRQFLFREADIGKPKAEVAAERLREINPDV--EVEAYTERLTPEN----AEELIK  109

Query  540  ALDGVTNALDNVDARTYVDRRCVFFRKPLLESGTLGTKGNTQVILPHITESYS--SSQDP  597
            + D V +A DN  AR  V+  CV   KPL+E+G LG KG   V++P  T  Y     +DP
Sbjct  110  SFDIVVDATDNFAARYLVNDACVKLGKPLIEAGVLGFKGQVTVVIPGKTPCYRCLFPEDP  169

Query  598  PEKSFPMCTLKSF  610
            P K  P CT+   
Sbjct  170  PPKLVPSCTVAGV  182


 Score = 132 bits (334),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 80/151 (53%), Gaps = 3/151 (2%)

Query  28   YSRQLY--VLGHEAMKRMSSSNVLVVGMKGLGVEIAKNVALAGVKSLTLYDPAPVVISDL  85
            YSRQL   ++G +  +++ +S VL+VG  GLG E AK +A AGV  +TL D   V +S+L
Sbjct  1    YSRQLALPLIGEDGQEKLRNSRVLIVGAGGLGSEAAKYLARAGVGKITLVDFDTVELSNL  60

Query  86   SSQFFLQPQDVGKPRAEVTAPRVAELNSYVPVTVHKGSNLVDDLEQL-KQYQAVVLTATP  144
            + QF  +  D+GKP+AEV A R+ E+N  V V  +      ++ E+L K +  VV     
Sbjct  61   NRQFLFREADIGKPKAEVAAERLREINPDVEVEAYTERLTPENAEELIKSFDIVVDATDN  120

Query  145  LKEQLAIADFCHKNGIYITITDTFGLFGYIF  175
               +  + D C K G  +      G  G + 
Sbjct  121  FAARYLVNDACVKLGKPLIEAGVLGFKGQVT  151


>CDD:462768 pfam09358, E1_UFD, Ubiquitin fold domain.  The ubiquitin fold 
domain is found at the C-terminus of ubiquitin-activating E1 
family enzymes. This domain binds to E2 enzymes.
Length=93

 Score = 152 bits (386),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (81%), Gaps = 2/93 (2%)

Query  937   WDRFELD-DIPLQDFLKHFSDL-GLEISMVSSGVSLLYASFYGPSKVKDRLPMKMSKLVE  994
             WDRFE++ D+ LQ+ L +F +  GLE++M+S GVSLLY+SF  P K K+RLPMK+S+LVE
Sbjct  1     WDRFEVEGDMTLQELLDYFKEKYGLEVTMLSYGVSLLYSSFMPPKKHKERLPMKISELVE  60

Query  995   HISKKPIPEHQKNIIFEVTAEDQNEEDVEIPYV  1027
              +SKKPIP HQK ++ EV+ ED++ EDVE+PYV
Sbjct  61    EVSKKPIPPHQKYLVLEVSCEDEDGEDVEVPYV  93


>CDD:465054 pfam16190, E1_FCCH, Ubiquitin-activating enzyme E1 FCCH domain. 
 This domain is found in the ubiquitin-activating E1 family 
enzymes.
Length=70

 Score = 143 bits (363),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 48/70 (69%), Positives = 54/70 (77%), Gaps = 0/70 (0%)

Query  201  DEDGLVSALDETRHGLEDGDYVTFTEVKGMEGLNNCDPRKITVKGPYTFSIGDVSGLGTY  260
            D  G+V+ LD+TRHGLEDGDYVTF+EV+GM  LN C+PRKI V GPYTFSIGD S    Y
Sbjct  1    DNPGVVTCLDDTRHGLEDGDYVTFSEVEGMTELNGCEPRKIKVLGPYTFSIGDTSSFSPY  60

Query  261  QGGGIFTQVK  270
              GGI TQVK
Sbjct  61   LRGGIVTQVK  70


>CDD:465055 pfam16191, E1_4HB, Ubiquitin-activating enzyme E1 four-helix 
bundle.  This domain is found in the ubiquitin-activating E1 
family enzymes.
Length=70

 Score = 129 bits (327),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 41/71 (58%), Positives = 53/71 (75%), Gaps = 1/71 (1%)

Query  271  MPKFVDFEPFSEQLKKPELMVSDFAKFDRPQQLHIGVQALHKFAEAHDGQYPRPHNDDDA  330
            MPK + F+   E LK+PE ++SDFAKFDRP QLH+  QALH F E H G+ PRP N++DA
Sbjct  1    MPKTLSFKSLEESLKEPEFLISDFAKFDRPAQLHLAFQALHAFQEKH-GRLPRPWNEEDA  59

Query  331  QEVIKIANELA  341
            +EV+K+A EL 
Sbjct  60   EEVVKLAKELN  70



Lambda      K        H        a         alpha
   0.317    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1326675812


Query= TCONS_00013086

Length=994
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463157 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzym...  422     5e-142
CDD:459987 pfam00899, ThiF, ThiF family. This domain is found in ...  215     3e-64 
CDD:462768 pfam09358, E1_UFD, Ubiquitin fold domain. The ubiquiti...  152     4e-44 
CDD:465054 pfam16190, E1_FCCH, Ubiquitin-activating enzyme E1 FCC...  143     3e-41 
CDD:465055 pfam16191, E1_4HB, Ubiquitin-activating enzyme E1 four...  129     3e-36 


>CDD:463157 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active 
site.  Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin 
by first adenylating with ATP its C-terminal glycine 
residue and thereafter linking this residue to the side chain 
of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester 
and free AMP. Later the ubiquitin moiety is transferred 
to a cysteine residue on one of the many forms of ubiquitin-conjugating 
enzymes (E2). This domain carries the last 
of five conserved cysteines that is part of the active site 
of the enzyme, responsible for ubiquitin thiolester complex 
formation, the active site being represented by the sequence 
motif PICTLKNFP.
Length=254

 Score = 422 bits (1087),  Expect = 5e-142, Method: Composition-based stats.
 Identities = 155/257 (60%), Positives = 181/257 (70%), Gaps = 9/257 (4%)

Query  572  PNRIEHTIAWARDLFQTFFVGPPEAVNMYLSQP-NYIEQTLKQAGNEK-QTLEHLRDFLV  629
            PN IEHTI WARD F+  FV PPE VN YL  P N+IE  LKQ G +K +TLE +R  LV
Sbjct  1    PNAIEHTIQWARDEFEGLFVQPPEEVNKYLQPPQNFIESLLKQGGGQKLETLESVRKSLV  60

Query  630  TNKPTSFDDCIIWARQQFEAQYNNAIQQLLYNFPRDSKTSSGQPFWSGPKRAPTPLKFDS  689
            T +P +F+DC+ WAR +FE  +NN I+QLLYNFP D KTSSG PFWSGPKR PTPL+FD 
Sbjct  61   TERPKTFEDCVAWARLKFEKLFNNDIKQLLYNFPPDHKTSSGAPFWSGPKRPPTPLEFDP  120

Query  690  SNPTHLAFIVAGANLHAFNYGIKNPGVDKEYYRKVVDNMIIPEFVPRSGVKIQADENEPD  749
            +NP HL F+VA ANL A  YGI     D+E   KV+  + +PEF P+SGVKIQ ++ E  
Sbjct  121  NNPLHLDFVVAAANLRAQVYGIP-GSRDREAIAKVLSKVKVPEFKPKSGVKIQVNDEEAA  179

Query  750  PNAQQSSSLDDSQEIQRLVESLPP----PESLGGFRLNPVEFEKDDDTNHHIDFITAASN  805
                 + S DD  E+  L+E LP     P SL GFRLNP+EFEKDDDTN HIDFITAASN
Sbjct  180  --DPNAESEDDEDELDELLEELPKLAVSPSSLAGFRLNPIEFEKDDDTNFHIDFITAASN  237

Query  806  LRADNYDIPQADRHKTK  822
            LRA NY IP ADRHKTK
Sbjct  238  LRARNYGIPPADRHKTK  254


>CDD:459987 pfam00899, ThiF, ThiF family.  This domain is found in ubiquitin 
activating E1 family and members of the bacterial ThiF/MoeB/HesA 
family. It is repeated in Ubiquitin-activating enzyme 
E1.
Length=238

 Score = 215 bits (549),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 75/193 (39%), Positives = 107/193 (55%), Gaps = 15/193 (8%)

Query  383  YDGQIA--VFGKEFQDKIANLTQFLVGAGAIGCETLKNWAMMGLGTGPKGKIFVTDMDQI  440
            Y  Q+A  + G++ Q+K+ N    +VGAG +G E  K  A  G+G     KI + D D +
Sbjct  1    YSRQLALPLIGEDGQEKLRNSRVLIVGAGGLGSEAAKYLARAGVG-----KITLVDFDTV  55

Query  441  ERSNLNRQFLFRSKDVGKLKSECASAAAQAMNPDLKGKIVTLRDRVGPDTEHIFNEEFWE  500
            E SNLNRQFLFR  D+GK K+E A+   + +NPD+  ++    +R+ P+      EE  +
Sbjct  56   ELSNLNRQFLFREADIGKPKAEVAAERLREINPDV--EVEAYTERLTPEN----AEELIK  109

Query  501  ALDGVTNALDNVDARTYVDRRCVFFRKPLLESGTLGTKGNTQVILPHITESYS--SSQDP  558
            + D V +A DN  AR  V+  CV   KPL+E+G LG KG   V++P  T  Y     +DP
Sbjct  110  SFDIVVDATDNFAARYLVNDACVKLGKPLIEAGVLGFKGQVTVVIPGKTPCYRCLFPEDP  169

Query  559  PEKSFPMCTLKSF  571
            P K  P CT+   
Sbjct  170  PPKLVPSCTVAGV  182


 Score = 118 bits (299),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 71/137 (52%), Gaps = 1/137 (1%)

Query  1    MKRMSSSNVLVVGMKGLGVEIAKNVALAGVKSLTLYDPAPVVISDLSSQFFLQPQDVGKP  60
             +++ +S VL+VG  GLG E AK +A AGV  +TL D   V +S+L+ QF  +  D+GKP
Sbjct  15   QEKLRNSRVLIVGAGGLGSEAAKYLARAGVGKITLVDFDTVELSNLNRQFLFREADIGKP  74

Query  61   RAEVTAPRVAELNSYVPVTVHKGSNLVDDLEQL-KQYQAVVLTATPLKEQLAIADFCHKN  119
            +AEV A R+ E+N  V V  +      ++ E+L K +  VV        +  + D C K 
Sbjct  75   KAEVAAERLREINPDVEVEAYTERLTPENAEELIKSFDIVVDATDNFAARYLVNDACVKL  134

Query  120  GIYITITDTFGLFGYIF  136
            G  +      G  G + 
Sbjct  135  GKPLIEAGVLGFKGQVT  151


>CDD:462768 pfam09358, E1_UFD, Ubiquitin fold domain.  The ubiquitin fold 
domain is found at the C-terminus of ubiquitin-activating E1 
family enzymes. This domain binds to E2 enzymes.
Length=93

 Score = 152 bits (387),  Expect = 4e-44, Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (81%), Gaps = 2/93 (2%)

Query  898  WDRFELD-DIPLQDFLKHFSDL-GLEISMVSSGVSLLYASFYGPSKVKDRLPMKMSKLVE  955
            WDRFE++ D+ LQ+ L +F +  GLE++M+S GVSLLY+SF  P K K+RLPMK+S+LVE
Sbjct  1    WDRFEVEGDMTLQELLDYFKEKYGLEVTMLSYGVSLLYSSFMPPKKHKERLPMKISELVE  60

Query  956  HISKKPIPEHQKNIIFEVTAEDQNEEDVEIPYV  988
             +SKKPIP HQK ++ EV+ ED++ EDVE+PYV
Sbjct  61   EVSKKPIPPHQKYLVLEVSCEDEDGEDVEVPYV  93


>CDD:465054 pfam16190, E1_FCCH, Ubiquitin-activating enzyme E1 FCCH domain. 
 This domain is found in the ubiquitin-activating E1 family 
enzymes.
Length=70

 Score = 143 bits (363),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 48/70 (69%), Positives = 54/70 (77%), Gaps = 0/70 (0%)

Query  162  DEDGLVSALDETRHGLEDGDYVTFTEVKGMEGLNNCDPRKITVKGPYTFSIGDVSGLGTY  221
            D  G+V+ LD+TRHGLEDGDYVTF+EV+GM  LN C+PRKI V GPYTFSIGD S    Y
Sbjct  1    DNPGVVTCLDDTRHGLEDGDYVTFSEVEGMTELNGCEPRKIKVLGPYTFSIGDTSSFSPY  60

Query  222  QGGGIFTQVK  231
              GGI TQVK
Sbjct  61   LRGGIVTQVK  70


>CDD:465055 pfam16191, E1_4HB, Ubiquitin-activating enzyme E1 four-helix 
bundle.  This domain is found in the ubiquitin-activating E1 
family enzymes.
Length=70

 Score = 129 bits (327),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 41/71 (58%), Positives = 53/71 (75%), Gaps = 1/71 (1%)

Query  232  MPKFVDFEPFSEQLKKPELMVSDFAKFDRPQQLHIGVQALHKFAEAHDGQYPRPHNDDDA  291
            MPK + F+   E LK+PE ++SDFAKFDRP QLH+  QALH F E H G+ PRP N++DA
Sbjct  1    MPKTLSFKSLEESLKEPEFLISDFAKFDRPAQLHLAFQALHAFQEKH-GRLPRPWNEEDA  59

Query  292  QEVIKIANELA  302
            +EV+K+A EL 
Sbjct  60   EEVVKLAKELN  70



Lambda      K        H        a         alpha
   0.317    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0826    0.140     1.90     42.6     43.6 

Effective search space used: 1271456648


Query= TCONS_00013087

Length=1028
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463157 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzym...  422     1e-141
CDD:459987 pfam00899, ThiF, ThiF family. This domain is found in ...  215     3e-64 
CDD:462768 pfam09358, E1_UFD, Ubiquitin fold domain. The ubiquiti...  152     5e-44 
CDD:465054 pfam16190, E1_FCCH, Ubiquitin-activating enzyme E1 FCC...  143     4e-41 
CDD:465055 pfam16191, E1_4HB, Ubiquitin-activating enzyme E1 four...  129     3e-36 


>CDD:463157 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active 
site.  Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin 
by first adenylating with ATP its C-terminal glycine 
residue and thereafter linking this residue to the side chain 
of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester 
and free AMP. Later the ubiquitin moiety is transferred 
to a cysteine residue on one of the many forms of ubiquitin-conjugating 
enzymes (E2). This domain carries the last 
of five conserved cysteines that is part of the active site 
of the enzyme, responsible for ubiquitin thiolester complex 
formation, the active site being represented by the sequence 
motif PICTLKNFP.
Length=254

 Score = 422 bits (1087),  Expect = 1e-141, Method: Composition-based stats.
 Identities = 155/257 (60%), Positives = 181/257 (70%), Gaps = 9/257 (4%)

Query  606  PNRIEHTIAWARDLFQTFFVGPPEAVNMYLSQP-NYIEQTLKQAGNEK-QTLEHLRDFLV  663
            PN IEHTI WARD F+  FV PPE VN YL  P N+IE  LKQ G +K +TLE +R  LV
Sbjct  1    PNAIEHTIQWARDEFEGLFVQPPEEVNKYLQPPQNFIESLLKQGGGQKLETLESVRKSLV  60

Query  664  TNKPTSFDDCIIWARQQFEAQYNNAIQQLLYNFPRDSKTSSGQPFWSGPKRAPTPLKFDS  723
            T +P +F+DC+ WAR +FE  +NN I+QLLYNFP D KTSSG PFWSGPKR PTPL+FD 
Sbjct  61   TERPKTFEDCVAWARLKFEKLFNNDIKQLLYNFPPDHKTSSGAPFWSGPKRPPTPLEFDP  120

Query  724  SNPTHLAFIVAGANLHAFNYGIKNPGVDKEYYRKVVDNMIIPEFVPRSGVKIQADENEPD  783
            +NP HL F+VA ANL A  YGI     D+E   KV+  + +PEF P+SGVKIQ ++ E  
Sbjct  121  NNPLHLDFVVAAANLRAQVYGIP-GSRDREAIAKVLSKVKVPEFKPKSGVKIQVNDEEAA  179

Query  784  PNAQQSSSLDDSQEIQRLVESLPP----PESLGGFRLNPVEFEKDDDTNHHIDFITAASN  839
                 + S DD  E+  L+E LP     P SL GFRLNP+EFEKDDDTN HIDFITAASN
Sbjct  180  --DPNAESEDDEDELDELLEELPKLAVSPSSLAGFRLNPIEFEKDDDTNFHIDFITAASN  237

Query  840  LRADNYDIPQADRHKTK  856
            LRA NY IP ADRHKTK
Sbjct  238  LRARNYGIPPADRHKTK  254


>CDD:459987 pfam00899, ThiF, ThiF family.  This domain is found in ubiquitin 
activating E1 family and members of the bacterial ThiF/MoeB/HesA 
family. It is repeated in Ubiquitin-activating enzyme 
E1.
Length=238

 Score = 215 bits (549),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 75/193 (39%), Positives = 107/193 (55%), Gaps = 15/193 (8%)

Query  417  YDGQIA--VFGKEFQDKIANLTQFLVGAGAIGCETLKNWAMMGLGTGPKGKIFVTDMDQI  474
            Y  Q+A  + G++ Q+K+ N    +VGAG +G E  K  A  G+G     KI + D D +
Sbjct  1    YSRQLALPLIGEDGQEKLRNSRVLIVGAGGLGSEAAKYLARAGVG-----KITLVDFDTV  55

Query  475  ERSNLNRQFLFRSKDVGKLKSECASAAAQAMNPDLKGKIVTLRDRVGPDTEHIFNEEFWE  534
            E SNLNRQFLFR  D+GK K+E A+   + +NPD+  ++    +R+ P+      EE  +
Sbjct  56   ELSNLNRQFLFREADIGKPKAEVAAERLREINPDV--EVEAYTERLTPEN----AEELIK  109

Query  535  ALDGVTNALDNVDARTYVDRRCVFFRKPLLESGTLGTKGNTQVILPHITESYS--SSQDP  592
            + D V +A DN  AR  V+  CV   KPL+E+G LG KG   V++P  T  Y     +DP
Sbjct  110  SFDIVVDATDNFAARYLVNDACVKLGKPLIEAGVLGFKGQVTVVIPGKTPCYRCLFPEDP  169

Query  593  PEKSFPMCTLKSF  605
            P K  P CT+   
Sbjct  170  PPKLVPSCTVAGV  182


 Score = 132 bits (334),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 80/151 (53%), Gaps = 3/151 (2%)

Query  23   YSRQLY--VLGHEAMKRMSSSNVLVVGMKGLGVEIAKNVALAGVKSLTLYDPAPVVISDL  80
            YSRQL   ++G +  +++ +S VL+VG  GLG E AK +A AGV  +TL D   V +S+L
Sbjct  1    YSRQLALPLIGEDGQEKLRNSRVLIVGAGGLGSEAAKYLARAGVGKITLVDFDTVELSNL  60

Query  81   SSQFFLQPQDVGKPRAEVTAPRVAELNSYVPVTVHKGSNLVDDLEQL-KQYQAVVLTATP  139
            + QF  +  D+GKP+AEV A R+ E+N  V V  +      ++ E+L K +  VV     
Sbjct  61   NRQFLFREADIGKPKAEVAAERLREINPDVEVEAYTERLTPENAEELIKSFDIVVDATDN  120

Query  140  LKEQLAIADFCHKNGIYITITDTFGLFGYIF  170
               +  + D C K G  +      G  G + 
Sbjct  121  FAARYLVNDACVKLGKPLIEAGVLGFKGQVT  151


>CDD:462768 pfam09358, E1_UFD, Ubiquitin fold domain.  The ubiquitin fold 
domain is found at the C-terminus of ubiquitin-activating E1 
family enzymes. This domain binds to E2 enzymes.
Length=93

 Score = 152 bits (386),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (81%), Gaps = 2/93 (2%)

Query  932   WDRFELD-DIPLQDFLKHFSDL-GLEISMVSSGVSLLYASFYGPSKVKDRLPMKMSKLVE  989
             WDRFE++ D+ LQ+ L +F +  GLE++M+S GVSLLY+SF  P K K+RLPMK+S+LVE
Sbjct  1     WDRFEVEGDMTLQELLDYFKEKYGLEVTMLSYGVSLLYSSFMPPKKHKERLPMKISELVE  60

Query  990   HISKKPIPEHQKNIIFEVTAEDQNEEDVEIPYV  1022
              +SKKPIP HQK ++ EV+ ED++ EDVE+PYV
Sbjct  61    EVSKKPIPPHQKYLVLEVSCEDEDGEDVEVPYV  93


>CDD:465054 pfam16190, E1_FCCH, Ubiquitin-activating enzyme E1 FCCH domain. 
 This domain is found in the ubiquitin-activating E1 family 
enzymes.
Length=70

 Score = 143 bits (363),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 48/70 (69%), Positives = 54/70 (77%), Gaps = 0/70 (0%)

Query  196  DEDGLVSALDETRHGLEDGDYVTFTEVKGMEGLNNCDPRKITVKGPYTFSIGDVSGLGTY  255
            D  G+V+ LD+TRHGLEDGDYVTF+EV+GM  LN C+PRKI V GPYTFSIGD S    Y
Sbjct  1    DNPGVVTCLDDTRHGLEDGDYVTFSEVEGMTELNGCEPRKIKVLGPYTFSIGDTSSFSPY  60

Query  256  QGGGIFTQVK  265
              GGI TQVK
Sbjct  61   LRGGIVTQVK  70


>CDD:465055 pfam16191, E1_4HB, Ubiquitin-activating enzyme E1 four-helix 
bundle.  This domain is found in the ubiquitin-activating E1 
family enzymes.
Length=70

 Score = 129 bits (326),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 41/71 (58%), Positives = 53/71 (75%), Gaps = 1/71 (1%)

Query  266  MPKFVDFEPFSEQLKKPELMVSDFAKFDRPQQLHIGVQALHKFAEAHDGQYPRPHNDDDA  325
            MPK + F+   E LK+PE ++SDFAKFDRP QLH+  QALH F E H G+ PRP N++DA
Sbjct  1    MPKTLSFKSLEESLKEPEFLISDFAKFDRPAQLHLAFQALHAFQEKH-GRLPRPWNEEDA  59

Query  326  QEVIKIANELA  336
            +EV+K+A EL 
Sbjct  60   EEVVKLAKELN  70



Lambda      K        H        a         alpha
   0.317    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1319596432


Query= TCONS_00013089

Length=804
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463157 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzym...  418     2e-142
CDD:459987 pfam00899, ThiF, ThiF family. This domain is found in ...  215     5e-65 
CDD:462768 pfam09358, E1_UFD, Ubiquitin fold domain. The ubiquiti...  152     3e-44 
CDD:465055 pfam16191, E1_4HB, Ubiquitin-activating enzyme E1 four...  127     7e-36 
CDD:465054 pfam16190, E1_FCCH, Ubiquitin-activating enzyme E1 FCC...  86.8    2e-21 


>CDD:463157 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active 
site.  Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin 
by first adenylating with ATP its C-terminal glycine 
residue and thereafter linking this residue to the side chain 
of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester 
and free AMP. Later the ubiquitin moiety is transferred 
to a cysteine residue on one of the many forms of ubiquitin-conjugating 
enzymes (E2). This domain carries the last 
of five conserved cysteines that is part of the active site 
of the enzyme, responsible for ubiquitin thiolester complex 
formation, the active site being represented by the sequence 
motif PICTLKNFP.
Length=254

 Score = 418 bits (1076),  Expect = 2e-142, Method: Composition-based stats.
 Identities = 155/257 (60%), Positives = 181/257 (70%), Gaps = 9/257 (4%)

Query  382  PNRIEHTIAWARDLFQTFFVGPPEAVNMYLSQP-NYIEQTLKQAGNEK-QTLEHLRDFLV  439
            PN IEHTI WARD F+  FV PPE VN YL  P N+IE  LKQ G +K +TLE +R  LV
Sbjct  1    PNAIEHTIQWARDEFEGLFVQPPEEVNKYLQPPQNFIESLLKQGGGQKLETLESVRKSLV  60

Query  440  TNKPTSFDDCIIWARQQFEAQYNNAIQQLLYNFPRDSKTSSGQPFWSGPKRAPTPLKFDS  499
            T +P +F+DC+ WAR +FE  +NN I+QLLYNFP D KTSSG PFWSGPKR PTPL+FD 
Sbjct  61   TERPKTFEDCVAWARLKFEKLFNNDIKQLLYNFPPDHKTSSGAPFWSGPKRPPTPLEFDP  120

Query  500  SNPTHLAFIVAGANLHAFNYGIKNPGVDKEYYRKVVDNMIIPEFVPRSGVKIQADENEPD  559
            +NP HL F+VA ANL A  YGI     D+E   KV+  + +PEF P+SGVKIQ ++ E  
Sbjct  121  NNPLHLDFVVAAANLRAQVYGIP-GSRDREAIAKVLSKVKVPEFKPKSGVKIQVNDEEAA  179

Query  560  PNAQQSSSLDDSQEIQRLVESLPP----PESLGGFRLNPVEFEKDDDTNHHIDFITAASN  615
                 + S DD  E+  L+E LP     P SL GFRLNP+EFEKDDDTN HIDFITAASN
Sbjct  180  --DPNAESEDDEDELDELLEELPKLAVSPSSLAGFRLNPIEFEKDDDTNFHIDFITAASN  237

Query  616  LRADNYDIPQADRHKTK  632
            LRA NY IP ADRHKTK
Sbjct  238  LRARNYGIPPADRHKTK  254


>CDD:459987 pfam00899, ThiF, ThiF family.  This domain is found in ubiquitin 
activating E1 family and members of the bacterial ThiF/MoeB/HesA 
family. It is repeated in Ubiquitin-activating enzyme 
E1.
Length=238

 Score = 215 bits (549),  Expect = 5e-65, Method: Composition-based stats.
 Identities = 75/193 (39%), Positives = 107/193 (55%), Gaps = 15/193 (8%)

Query  193  YDGQIA--VFGKEFQDKIANLTQFLVGAGAIGCETLKNWAMMGLGTGPKGKIFVTDMDQI  250
            Y  Q+A  + G++ Q+K+ N    +VGAG +G E  K  A  G+G     KI + D D +
Sbjct  1    YSRQLALPLIGEDGQEKLRNSRVLIVGAGGLGSEAAKYLARAGVG-----KITLVDFDTV  55

Query  251  ERSNLNRQFLFRSKDVGKLKSECASAAAQAMNPDLKGKIVTLRDRVGPDTEHIFNEEFWE  310
            E SNLNRQFLFR  D+GK K+E A+   + +NPD+  ++    +R+ P+      EE  +
Sbjct  56   ELSNLNRQFLFREADIGKPKAEVAAERLREINPDV--EVEAYTERLTPEN----AEELIK  109

Query  311  ALDGVTNALDNVDARTYVDRRCVFFRKPLLESGTLGTKGNTQVILPHITESYS--SSQDP  368
            + D V +A DN  AR  V+  CV   KPL+E+G LG KG   V++P  T  Y     +DP
Sbjct  110  SFDIVVDATDNFAARYLVNDACVKLGKPLIEAGVLGFKGQVTVVIPGKTPCYRCLFPEDP  169

Query  369  PEKSFPMCTLKSF  381
            P K  P CT+   
Sbjct  170  PPKLVPSCTVAGV  182


>CDD:462768 pfam09358, E1_UFD, Ubiquitin fold domain.  The ubiquitin fold 
domain is found at the C-terminus of ubiquitin-activating E1 
family enzymes. This domain binds to E2 enzymes.
Length=93

 Score = 152 bits (386),  Expect = 3e-44, Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (81%), Gaps = 2/93 (2%)

Query  708  WDRFELD-DIPLQDFLKHFSDL-GLEISMVSSGVSLLYASFYGPSKVKDRLPMKMSKLVE  765
            WDRFE++ D+ LQ+ L +F +  GLE++M+S GVSLLY+SF  P K K+RLPMK+S+LVE
Sbjct  1    WDRFEVEGDMTLQELLDYFKEKYGLEVTMLSYGVSLLYSSFMPPKKHKERLPMKISELVE  60

Query  766  HISKKPIPEHQKNIIFEVTAEDQNEEDVEIPYV  798
             +SKKPIP HQK ++ EV+ ED++ EDVE+PYV
Sbjct  61   EVSKKPIPPHQKYLVLEVSCEDEDGEDVEVPYV  93


>CDD:465055 pfam16191, E1_4HB, Ubiquitin-activating enzyme E1 four-helix 
bundle.  This domain is found in the ubiquitin-activating E1 
family enzymes.
Length=70

 Score = 127 bits (323),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 41/71 (58%), Positives = 53/71 (75%), Gaps = 1/71 (1%)

Query  42   MPKFVDFEPFSEQLKKPELMVSDFAKFDRPQQLHIGVQALHKFAEAHDGQYPRPHNDDDA  101
            MPK + F+   E LK+PE ++SDFAKFDRP QLH+  QALH F E H G+ PRP N++DA
Sbjct  1    MPKTLSFKSLEESLKEPEFLISDFAKFDRPAQLHLAFQALHAFQEKH-GRLPRPWNEEDA  59

Query  102  QEVIKIANELA  112
            +EV+K+A EL 
Sbjct  60   EEVVKLAKELN  70


>CDD:465054 pfam16190, E1_FCCH, Ubiquitin-activating enzyme E1 FCCH domain. 
 This domain is found in the ubiquitin-activating E1 family 
enzymes.
Length=70

 Score = 86.8 bits (216),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 27/41 (66%), Positives = 28/41 (68%), Gaps = 0/41 (0%)

Query  1   MEGLNNCDPRKITVKGPYTFSIGDVSGLGTYQGGGIFTQVK  41
           M  LN C+PRKI V GPYTFSIGD S    Y  GGI TQVK
Sbjct  30  MTELNGCEPRKIKVLGPYTFSIGDTSSFSPYLRGGIVTQVK  70



Lambda      K        H        a         alpha
   0.317    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1033157920


Query= TCONS_00018621

Length=994
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463157 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzym...  422     5e-142
CDD:459987 pfam00899, ThiF, ThiF family. This domain is found in ...  215     3e-64 
CDD:462768 pfam09358, E1_UFD, Ubiquitin fold domain. The ubiquiti...  152     4e-44 
CDD:465054 pfam16190, E1_FCCH, Ubiquitin-activating enzyme E1 FCC...  143     3e-41 
CDD:465055 pfam16191, E1_4HB, Ubiquitin-activating enzyme E1 four...  129     3e-36 


>CDD:463157 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active 
site.  Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin 
by first adenylating with ATP its C-terminal glycine 
residue and thereafter linking this residue to the side chain 
of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester 
and free AMP. Later the ubiquitin moiety is transferred 
to a cysteine residue on one of the many forms of ubiquitin-conjugating 
enzymes (E2). This domain carries the last 
of five conserved cysteines that is part of the active site 
of the enzyme, responsible for ubiquitin thiolester complex 
formation, the active site being represented by the sequence 
motif PICTLKNFP.
Length=254

 Score = 422 bits (1087),  Expect = 5e-142, Method: Composition-based stats.
 Identities = 155/257 (60%), Positives = 181/257 (70%), Gaps = 9/257 (4%)

Query  572  PNRIEHTIAWARDLFQTFFVGPPEAVNMYLSQP-NYIEQTLKQAGNEK-QTLEHLRDFLV  629
            PN IEHTI WARD F+  FV PPE VN YL  P N+IE  LKQ G +K +TLE +R  LV
Sbjct  1    PNAIEHTIQWARDEFEGLFVQPPEEVNKYLQPPQNFIESLLKQGGGQKLETLESVRKSLV  60

Query  630  TNKPTSFDDCIIWARQQFEAQYNNAIQQLLYNFPRDSKTSSGQPFWSGPKRAPTPLKFDS  689
            T +P +F+DC+ WAR +FE  +NN I+QLLYNFP D KTSSG PFWSGPKR PTPL+FD 
Sbjct  61   TERPKTFEDCVAWARLKFEKLFNNDIKQLLYNFPPDHKTSSGAPFWSGPKRPPTPLEFDP  120

Query  690  SNPTHLAFIVAGANLHAFNYGIKNPGVDKEYYRKVVDNMIIPEFVPRSGVKIQADENEPD  749
            +NP HL F+VA ANL A  YGI     D+E   KV+  + +PEF P+SGVKIQ ++ E  
Sbjct  121  NNPLHLDFVVAAANLRAQVYGIP-GSRDREAIAKVLSKVKVPEFKPKSGVKIQVNDEEAA  179

Query  750  PNAQQSSSLDDSQEIQRLVESLPP----PESLGGFRLNPVEFEKDDDTNHHIDFITAASN  805
                 + S DD  E+  L+E LP     P SL GFRLNP+EFEKDDDTN HIDFITAASN
Sbjct  180  --DPNAESEDDEDELDELLEELPKLAVSPSSLAGFRLNPIEFEKDDDTNFHIDFITAASN  237

Query  806  LRADNYDIPQADRHKTK  822
            LRA NY IP ADRHKTK
Sbjct  238  LRARNYGIPPADRHKTK  254


>CDD:459987 pfam00899, ThiF, ThiF family.  This domain is found in ubiquitin 
activating E1 family and members of the bacterial ThiF/MoeB/HesA 
family. It is repeated in Ubiquitin-activating enzyme 
E1.
Length=238

 Score = 215 bits (549),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 75/193 (39%), Positives = 107/193 (55%), Gaps = 15/193 (8%)

Query  383  YDGQIA--VFGKEFQDKIANLTQFLVGAGAIGCETLKNWAMMGLGTGPKGKIFVTDMDQI  440
            Y  Q+A  + G++ Q+K+ N    +VGAG +G E  K  A  G+G     KI + D D +
Sbjct  1    YSRQLALPLIGEDGQEKLRNSRVLIVGAGGLGSEAAKYLARAGVG-----KITLVDFDTV  55

Query  441  ERSNLNRQFLFRSKDVGKLKSECASAAAQAMNPDLKGKIVTLRDRVGPDTEHIFNEEFWE  500
            E SNLNRQFLFR  D+GK K+E A+   + +NPD+  ++    +R+ P+      EE  +
Sbjct  56   ELSNLNRQFLFREADIGKPKAEVAAERLREINPDV--EVEAYTERLTPEN----AEELIK  109

Query  501  ALDGVTNALDNVDARTYVDRRCVFFRKPLLESGTLGTKGNTQVILPHITESYS--SSQDP  558
            + D V +A DN  AR  V+  CV   KPL+E+G LG KG   V++P  T  Y     +DP
Sbjct  110  SFDIVVDATDNFAARYLVNDACVKLGKPLIEAGVLGFKGQVTVVIPGKTPCYRCLFPEDP  169

Query  559  PEKSFPMCTLKSF  571
            P K  P CT+   
Sbjct  170  PPKLVPSCTVAGV  182


 Score = 118 bits (299),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 71/137 (52%), Gaps = 1/137 (1%)

Query  1    MKRMSSSNVLVVGMKGLGVEIAKNVALAGVKSLTLYDPAPVVISDLSSQFFLQPQDVGKP  60
             +++ +S VL+VG  GLG E AK +A AGV  +TL D   V +S+L+ QF  +  D+GKP
Sbjct  15   QEKLRNSRVLIVGAGGLGSEAAKYLARAGVGKITLVDFDTVELSNLNRQFLFREADIGKP  74

Query  61   RAEVTAPRVAELNSYVPVTVHKGSNLVDDLEQL-KQYQAVVLTATPLKEQLAIADFCHKN  119
            +AEV A R+ E+N  V V  +      ++ E+L K +  VV        +  + D C K 
Sbjct  75   KAEVAAERLREINPDVEVEAYTERLTPENAEELIKSFDIVVDATDNFAARYLVNDACVKL  134

Query  120  GIYITITDTFGLFGYIF  136
            G  +      G  G + 
Sbjct  135  GKPLIEAGVLGFKGQVT  151


>CDD:462768 pfam09358, E1_UFD, Ubiquitin fold domain.  The ubiquitin fold 
domain is found at the C-terminus of ubiquitin-activating E1 
family enzymes. This domain binds to E2 enzymes.
Length=93

 Score = 152 bits (387),  Expect = 4e-44, Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (81%), Gaps = 2/93 (2%)

Query  898  WDRFELD-DIPLQDFLKHFSDL-GLEISMVSSGVSLLYASFYGPSKVKDRLPMKMSKLVE  955
            WDRFE++ D+ LQ+ L +F +  GLE++M+S GVSLLY+SF  P K K+RLPMK+S+LVE
Sbjct  1    WDRFEVEGDMTLQELLDYFKEKYGLEVTMLSYGVSLLYSSFMPPKKHKERLPMKISELVE  60

Query  956  HISKKPIPEHQKNIIFEVTAEDQNEEDVEIPYV  988
             +SKKPIP HQK ++ EV+ ED++ EDVE+PYV
Sbjct  61   EVSKKPIPPHQKYLVLEVSCEDEDGEDVEVPYV  93


>CDD:465054 pfam16190, E1_FCCH, Ubiquitin-activating enzyme E1 FCCH domain. 
 This domain is found in the ubiquitin-activating E1 family 
enzymes.
Length=70

 Score = 143 bits (363),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 48/70 (69%), Positives = 54/70 (77%), Gaps = 0/70 (0%)

Query  162  DEDGLVSALDETRHGLEDGDYVTFTEVKGMEGLNNCDPRKITVKGPYTFSIGDVSGLGTY  221
            D  G+V+ LD+TRHGLEDGDYVTF+EV+GM  LN C+PRKI V GPYTFSIGD S    Y
Sbjct  1    DNPGVVTCLDDTRHGLEDGDYVTFSEVEGMTELNGCEPRKIKVLGPYTFSIGDTSSFSPY  60

Query  222  QGGGIFTQVK  231
              GGI TQVK
Sbjct  61   LRGGIVTQVK  70


>CDD:465055 pfam16191, E1_4HB, Ubiquitin-activating enzyme E1 four-helix 
bundle.  This domain is found in the ubiquitin-activating E1 
family enzymes.
Length=70

 Score = 129 bits (327),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 41/71 (58%), Positives = 53/71 (75%), Gaps = 1/71 (1%)

Query  232  MPKFVDFEPFSEQLKKPELMVSDFAKFDRPQQLHIGVQALHKFAEAHDGQYPRPHNDDDA  291
            MPK + F+   E LK+PE ++SDFAKFDRP QLH+  QALH F E H G+ PRP N++DA
Sbjct  1    MPKTLSFKSLEESLKEPEFLISDFAKFDRPAQLHLAFQALHAFQEKH-GRLPRPWNEEDA  59

Query  292  QEVIKIANELA  302
            +EV+K+A EL 
Sbjct  60   EEVVKLAKELN  70



Lambda      K        H        a         alpha
   0.317    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1271456648


Query= TCONS_00013090

Length=1028
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463157 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzym...  422     1e-141
CDD:459987 pfam00899, ThiF, ThiF family. This domain is found in ...  215     3e-64 
CDD:462768 pfam09358, E1_UFD, Ubiquitin fold domain. The ubiquiti...  152     5e-44 
CDD:465054 pfam16190, E1_FCCH, Ubiquitin-activating enzyme E1 FCC...  143     4e-41 
CDD:465055 pfam16191, E1_4HB, Ubiquitin-activating enzyme E1 four...  129     3e-36 


>CDD:463157 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active 
site.  Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin 
by first adenylating with ATP its C-terminal glycine 
residue and thereafter linking this residue to the side chain 
of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester 
and free AMP. Later the ubiquitin moiety is transferred 
to a cysteine residue on one of the many forms of ubiquitin-conjugating 
enzymes (E2). This domain carries the last 
of five conserved cysteines that is part of the active site 
of the enzyme, responsible for ubiquitin thiolester complex 
formation, the active site being represented by the sequence 
motif PICTLKNFP.
Length=254

 Score = 422 bits (1087),  Expect = 1e-141, Method: Composition-based stats.
 Identities = 155/257 (60%), Positives = 181/257 (70%), Gaps = 9/257 (4%)

Query  606  PNRIEHTIAWARDLFQTFFVGPPEAVNMYLSQP-NYIEQTLKQAGNEK-QTLEHLRDFLV  663
            PN IEHTI WARD F+  FV PPE VN YL  P N+IE  LKQ G +K +TLE +R  LV
Sbjct  1    PNAIEHTIQWARDEFEGLFVQPPEEVNKYLQPPQNFIESLLKQGGGQKLETLESVRKSLV  60

Query  664  TNKPTSFDDCIIWARQQFEAQYNNAIQQLLYNFPRDSKTSSGQPFWSGPKRAPTPLKFDS  723
            T +P +F+DC+ WAR +FE  +NN I+QLLYNFP D KTSSG PFWSGPKR PTPL+FD 
Sbjct  61   TERPKTFEDCVAWARLKFEKLFNNDIKQLLYNFPPDHKTSSGAPFWSGPKRPPTPLEFDP  120

Query  724  SNPTHLAFIVAGANLHAFNYGIKNPGVDKEYYRKVVDNMIIPEFVPRSGVKIQADENEPD  783
            +NP HL F+VA ANL A  YGI     D+E   KV+  + +PEF P+SGVKIQ ++ E  
Sbjct  121  NNPLHLDFVVAAANLRAQVYGIP-GSRDREAIAKVLSKVKVPEFKPKSGVKIQVNDEEAA  179

Query  784  PNAQQSSSLDDSQEIQRLVESLPP----PESLGGFRLNPVEFEKDDDTNHHIDFITAASN  839
                 + S DD  E+  L+E LP     P SL GFRLNP+EFEKDDDTN HIDFITAASN
Sbjct  180  --DPNAESEDDEDELDELLEELPKLAVSPSSLAGFRLNPIEFEKDDDTNFHIDFITAASN  237

Query  840  LRADNYDIPQADRHKTK  856
            LRA NY IP ADRHKTK
Sbjct  238  LRARNYGIPPADRHKTK  254


>CDD:459987 pfam00899, ThiF, ThiF family.  This domain is found in ubiquitin 
activating E1 family and members of the bacterial ThiF/MoeB/HesA 
family. It is repeated in Ubiquitin-activating enzyme 
E1.
Length=238

 Score = 215 bits (549),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 75/193 (39%), Positives = 107/193 (55%), Gaps = 15/193 (8%)

Query  417  YDGQIA--VFGKEFQDKIANLTQFLVGAGAIGCETLKNWAMMGLGTGPKGKIFVTDMDQI  474
            Y  Q+A  + G++ Q+K+ N    +VGAG +G E  K  A  G+G     KI + D D +
Sbjct  1    YSRQLALPLIGEDGQEKLRNSRVLIVGAGGLGSEAAKYLARAGVG-----KITLVDFDTV  55

Query  475  ERSNLNRQFLFRSKDVGKLKSECASAAAQAMNPDLKGKIVTLRDRVGPDTEHIFNEEFWE  534
            E SNLNRQFLFR  D+GK K+E A+   + +NPD+  ++    +R+ P+      EE  +
Sbjct  56   ELSNLNRQFLFREADIGKPKAEVAAERLREINPDV--EVEAYTERLTPEN----AEELIK  109

Query  535  ALDGVTNALDNVDARTYVDRRCVFFRKPLLESGTLGTKGNTQVILPHITESYS--SSQDP  592
            + D V +A DN  AR  V+  CV   KPL+E+G LG KG   V++P  T  Y     +DP
Sbjct  110  SFDIVVDATDNFAARYLVNDACVKLGKPLIEAGVLGFKGQVTVVIPGKTPCYRCLFPEDP  169

Query  593  PEKSFPMCTLKSF  605
            P K  P CT+   
Sbjct  170  PPKLVPSCTVAGV  182


 Score = 132 bits (334),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 80/151 (53%), Gaps = 3/151 (2%)

Query  23   YSRQLY--VLGHEAMKRMSSSNVLVVGMKGLGVEIAKNVALAGVKSLTLYDPAPVVISDL  80
            YSRQL   ++G +  +++ +S VL+VG  GLG E AK +A AGV  +TL D   V +S+L
Sbjct  1    YSRQLALPLIGEDGQEKLRNSRVLIVGAGGLGSEAAKYLARAGVGKITLVDFDTVELSNL  60

Query  81   SSQFFLQPQDVGKPRAEVTAPRVAELNSYVPVTVHKGSNLVDDLEQL-KQYQAVVLTATP  139
            + QF  +  D+GKP+AEV A R+ E+N  V V  +      ++ E+L K +  VV     
Sbjct  61   NRQFLFREADIGKPKAEVAAERLREINPDVEVEAYTERLTPENAEELIKSFDIVVDATDN  120

Query  140  LKEQLAIADFCHKNGIYITITDTFGLFGYIF  170
               +  + D C K G  +      G  G + 
Sbjct  121  FAARYLVNDACVKLGKPLIEAGVLGFKGQVT  151


>CDD:462768 pfam09358, E1_UFD, Ubiquitin fold domain.  The ubiquitin fold 
domain is found at the C-terminus of ubiquitin-activating E1 
family enzymes. This domain binds to E2 enzymes.
Length=93

 Score = 152 bits (386),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (81%), Gaps = 2/93 (2%)

Query  932   WDRFELD-DIPLQDFLKHFSDL-GLEISMVSSGVSLLYASFYGPSKVKDRLPMKMSKLVE  989
             WDRFE++ D+ LQ+ L +F +  GLE++M+S GVSLLY+SF  P K K+RLPMK+S+LVE
Sbjct  1     WDRFEVEGDMTLQELLDYFKEKYGLEVTMLSYGVSLLYSSFMPPKKHKERLPMKISELVE  60

Query  990   HISKKPIPEHQKNIIFEVTAEDQNEEDVEIPYV  1022
              +SKKPIP HQK ++ EV+ ED++ EDVE+PYV
Sbjct  61    EVSKKPIPPHQKYLVLEVSCEDEDGEDVEVPYV  93


>CDD:465054 pfam16190, E1_FCCH, Ubiquitin-activating enzyme E1 FCCH domain. 
 This domain is found in the ubiquitin-activating E1 family 
enzymes.
Length=70

 Score = 143 bits (363),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 48/70 (69%), Positives = 54/70 (77%), Gaps = 0/70 (0%)

Query  196  DEDGLVSALDETRHGLEDGDYVTFTEVKGMEGLNNCDPRKITVKGPYTFSIGDVSGLGTY  255
            D  G+V+ LD+TRHGLEDGDYVTF+EV+GM  LN C+PRKI V GPYTFSIGD S    Y
Sbjct  1    DNPGVVTCLDDTRHGLEDGDYVTFSEVEGMTELNGCEPRKIKVLGPYTFSIGDTSSFSPY  60

Query  256  QGGGIFTQVK  265
              GGI TQVK
Sbjct  61   LRGGIVTQVK  70


>CDD:465055 pfam16191, E1_4HB, Ubiquitin-activating enzyme E1 four-helix 
bundle.  This domain is found in the ubiquitin-activating E1 
family enzymes.
Length=70

 Score = 129 bits (326),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 41/71 (58%), Positives = 53/71 (75%), Gaps = 1/71 (1%)

Query  266  MPKFVDFEPFSEQLKKPELMVSDFAKFDRPQQLHIGVQALHKFAEAHDGQYPRPHNDDDA  325
            MPK + F+   E LK+PE ++SDFAKFDRP QLH+  QALH F E H G+ PRP N++DA
Sbjct  1    MPKTLSFKSLEESLKEPEFLISDFAKFDRPAQLHLAFQALHAFQEKH-GRLPRPWNEEDA  59

Query  326  QEVIKIANELA  336
            +EV+K+A EL 
Sbjct  60   EEVVKLAKELN  70



Lambda      K        H        a         alpha
   0.317    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1319596432


Query= TCONS_00013091

Length=434
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433185 pfam13410, GST_C_2, Glutathione S-transferase, C-termi...  66.6    1e-14


>CDD:433185 pfam13410, GST_C_2, Glutathione S-transferase, C-terminal domain. 
 This domain is closely related to pfam00043.
Length=67

 Score = 66.6 bits (163),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 34/76 (45%), Gaps = 9/76 (12%)

Query  303  AYEKAVTTLFASLDRIEAHLSKDANSPYFFGSSITEVDIRLFTTIIRFDPVYVQHFKCNI  362
            A E+A   L A+LD +EA L+     P   G   T  DI L   + R D  Y        
Sbjct  1    ALERAREQLRAALDALEARLADG---PGLLGDRPTLADIALAPVLARLDAAYPGL-----  52

Query  363  RDIRSGYPAIHRWVRR  378
             D+R GYP +  W+ R
Sbjct  53   -DLREGYPRLRAWLER  67



Lambda      K        H        a         alpha
   0.322    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 527594176


Query= TCONS_00013092

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433185 pfam13410, GST_C_2, Glutathione S-transferase, C-termi...  66.6    1e-14


>CDD:433185 pfam13410, GST_C_2, Glutathione S-transferase, C-terminal domain. 
 This domain is closely related to pfam00043.
Length=67

 Score = 66.6 bits (163),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 34/76 (45%), Gaps = 9/76 (12%)

Query  284  AYEKAVTTLFASLDRIEAHLSKDANSPYFFGSSITEVDIRLFTTIIRFDPVYVQHFKCNI  343
            A E+A   L A+LD +EA L+     P   G   T  DI L   + R D  Y        
Sbjct  1    ALERAREQLRAALDALEARLADG---PGLLGDRPTLADIALAPVLARLDAAYPGL-----  52

Query  344  RDIRSGYPAIHRWVRR  359
             D+R GYP +  W+ R
Sbjct  53   -DLREGYPRLRAWLER  67



Lambda      K        H        a         alpha
   0.322    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00013093

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.148    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00013094

Length=302


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00013095

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00013096

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00013097

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00013098

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00018622

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00013099

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.139    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00013100

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:405323 pfam14618, DUF4452, Domain of unknown function (DUF445...  213     4e-72


>CDD:405323 pfam14618, DUF4452, Domain of unknown function (DUF4452).  This 
fungal family has no known function. However, it is rich 
in paired, as CXXC, cysteines and histidines, but these do not 
fall in the conformation that might suggest zinc-binding.
Length=169

 Score = 213 bits (545),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 113/167 (68%), Positives = 133/167 (80%), Gaps = 6/167 (4%)

Query  27   HHNGRSRRGPKM-ASQNAQRQFRGVKSMRELAEAPAVTAFRARFEAGRSFDLDDDLEFCP  85
            HH GRSRR P++  SQNAQRQFRGV+SM+EL EA A+TAFR RFEAGRSFDL+DD+EFCP
Sbjct  1    HHGGRSRRAPRLSVSQNAQRQFRGVRSMKELPEAAALTAFRRRFEAGRSFDLEDDMEFCP  60

Query  86   GLLTEDDLHSIHSASSDRSSLSSGSPDSSPLQHQIQPVQQVTPSISLSPAS----SNSFV  141
             LLTEDDL SIHS+SSDRSSLSSGSP+SSPLQHQ+QP QQV PS SL+ AS      S+ 
Sbjct  61   NLLTEDDLVSIHSSSSDRSSLSSGSPESSPLQHQVQP-QQVAPSFSLNSASPPYIPPSYQ  119

Query  142  HSGVNMGFQQPSAVRTRKVIPIVNPNTGMTLTSPPTSISPGAMQNAQ  188
                ++   QPSA RTR  IPIVNP+TG++++SPP S+SPG MQ  Q
Sbjct  120  QQQSHLKLHQPSATRTRNAIPIVNPSTGISMSSPPPSVSPGRMQQQQ  166



Lambda      K        H        a         alpha
   0.314    0.125    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00013101

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:405323 pfam14618, DUF4452, Domain of unknown function (DUF445...  213     4e-72


>CDD:405323 pfam14618, DUF4452, Domain of unknown function (DUF4452).  This 
fungal family has no known function. However, it is rich 
in paired, as CXXC, cysteines and histidines, but these do not 
fall in the conformation that might suggest zinc-binding.
Length=169

 Score = 213 bits (545),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 113/167 (68%), Positives = 133/167 (80%), Gaps = 6/167 (4%)

Query  27   HHNGRSRRGPKM-ASQNAQRQFRGVKSMRELAEAPAVTAFRARFEAGRSFDLDDDLEFCP  85
            HH GRSRR P++  SQNAQRQFRGV+SM+EL EA A+TAFR RFEAGRSFDL+DD+EFCP
Sbjct  1    HHGGRSRRAPRLSVSQNAQRQFRGVRSMKELPEAAALTAFRRRFEAGRSFDLEDDMEFCP  60

Query  86   GLLTEDDLHSIHSASSDRSSLSSGSPDSSPLQHQIQPVQQVTPSISLSPAS----SNSFV  141
             LLTEDDL SIHS+SSDRSSLSSGSP+SSPLQHQ+QP QQV PS SL+ AS      S+ 
Sbjct  61   NLLTEDDLVSIHSSSSDRSSLSSGSPESSPLQHQVQP-QQVAPSFSLNSASPPYIPPSYQ  119

Query  142  HSGVNMGFQQPSAVRTRKVIPIVNPNTGMTLTSPPTSISPGAMQNAQ  188
                ++   QPSA RTR  IPIVNP+TG++++SPP S+SPG MQ  Q
Sbjct  120  QQQSHLKLHQPSATRTRNAIPIVNPSTGISMSSPPPSVSPGRMQQQQ  166



Lambda      K        H        a         alpha
   0.314    0.125    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00013102

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00013104

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00013105

Length=451


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 553667144


Query= TCONS_00013107

Length=451


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 553667144


Query= TCONS_00013106

Length=451


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 553667144


Query= TCONS_00013103

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00013108

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00013109

Length=467


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 578206408


Query= TCONS_00013110

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  92.1    3e-24
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  77.2    3e-19
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  68.5    6e-16


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 92.1 bits (229),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 52/182 (29%), Positives = 71/182 (39%), Gaps = 28/182 (15%)

Query  15   HHLFKLLVGGDLYRAPILNDGRPKRILDVGTGTGIWALEMADDFPDAEIVGTDLSPIQPN  74
            H   +LL    L   P L    P R+LD G GTGI+   +        + G D SPI   
Sbjct  3    HQRERLLADLLLRLLPKLP--SPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAIE  58

Query  75   WAPPNCTFNVDDAESDWTFTPAEAFDYIHARSLGGGIGDWNRFLRQAYRHTKPGGWVEIQ  134
             A  N  F+  D +      PA  FD I AR +   + D    LRQ     KPGG + + 
Sbjct  59   RALLNVRFDQFDEQEAAV--PAGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLLLS  116

Query  135  EYETWIRSDDGTIQRAPMLLDWQQKIDEASTRFGRPMNV------ASSLAGWMQEVGFVN  188
                       + +   +LL+W          + RP N       A SL   ++E GF  
Sbjct  117  TP-------LASDEADRLLLEW---------PYLRPRNGHISLFSARSLKRLLEEAGFEV  160

Query  189  VT  190
            V+
Sbjct  161  VS  162


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 77.2 bits (191),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 42/99 (42%), Gaps = 12/99 (12%)

Query  40   ILDVGTGTGIWALEMADDFPDAEIVGTDLSPIQPNWA-------PPNCTFNVDDAESDWT  92
            +LD+G GTG   L +A     A + G DLSP     A         N  F   DAE D  
Sbjct  1    VLDLGCGTGRLTLALARRG-GARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAE-DLP  58

Query  93   FTPAEAFDYIHARSLGG--GIGDWNRFLRQAYRHTKPGG  129
            F P  +FD + +  +       D    LR+  R  KPGG
Sbjct  59   F-PDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 68.5 bits (168),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 25/98 (26%), Positives = 38/98 (39%), Gaps = 7/98 (7%)

Query  41   LDVGTGTGIWALEMADDFPDAEIVGTDLSPIQPNWA-------PPNCTFNVDDAESDWTF  93
            L++G GTG     + +  P  E  G D+SP     A              V+  + D   
Sbjct  1    LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAALGLLNAVRVELFQLDLGE  60

Query  94   TPAEAFDYIHARSLGGGIGDWNRFLRQAYRHTKPGGWV  131
                +FD + A ++   + D    LR   R  KPGG +
Sbjct  61   LDPGSFDVVVASNVLHHLADPRAVLRNIRRLLKPGGVL  98



Lambda      K        H        a         alpha
   0.320    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00013111

Length=535


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00018625

Length=535


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0748    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00018624

Length=535


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00018626

Length=590


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 744225144


Query= TCONS_00018627

Length=407


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00013112

Length=407


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00013113

Length=290


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00018628

Length=290


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00013115

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00018629

Length=390


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00013118

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396251 pfam01588, tRNA_bind, Putative tRNA binding domain. Th...  101     1e-26


>CDD:396251 pfam01588, tRNA_bind, Putative tRNA binding domain.  This domain 
is found in prokaryotic methionyl-tRNA synthetases, prokaryotic 
phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding 
protein (G4p1 or p42, ARC1), human tyrosyl-tRNA synthetase, 
and endothelial-monocyte activating polypeptide II. 
G4p1 binds specifically to tRNA form a complex with methionyl-tRNA 
synthetases. In human tyrosyl-tRNA synthetase this domain 
may direct tRNA to the active site of the enzyme. This 
domain may perform a common function in tRNA aminoacylation.
Length=96

 Score = 101 bits (253),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 59/117 (50%), Gaps = 21/117 (18%)

Query  251  LRVGHILRAINHPNADSLYVSTIDCGDAPGTENTSVDEETGKTVRTVCSGLNGLVPLEEM  310
            LRVG ++ A  HPNAD L V  +D G+                 R + SG   + P EE+
Sbjct  1    LRVGKVVEAERHPNADKLLVCKVDVGEE--------------EPRQIVSGAVNVYPPEEL  46

Query  311  QNRKIVAVCNLKPVTMRGIKSTAMVLAASPRVAEGEDSHAGPVELVTPPADAPAGTR  367
              R +V V NLKP  +RG++S  M+L+A     E +      V L+ PPAD P GT+
Sbjct  47   VGRLVVVVANLKPAKLRGVESEGMILSAE----ELDGGS---VGLLEPPADVPPGTK  96



Lambda      K        H        a         alpha
   0.311    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00013117

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396251 pfam01588, tRNA_bind, Putative tRNA binding domain. Th...  101     1e-26


>CDD:396251 pfam01588, tRNA_bind, Putative tRNA binding domain.  This domain 
is found in prokaryotic methionyl-tRNA synthetases, prokaryotic 
phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding 
protein (G4p1 or p42, ARC1), human tyrosyl-tRNA synthetase, 
and endothelial-monocyte activating polypeptide II. 
G4p1 binds specifically to tRNA form a complex with methionyl-tRNA 
synthetases. In human tyrosyl-tRNA synthetase this domain 
may direct tRNA to the active site of the enzyme. This 
domain may perform a common function in tRNA aminoacylation.
Length=96

 Score = 101 bits (253),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 59/117 (50%), Gaps = 21/117 (18%)

Query  251  LRVGHILRAINHPNADSLYVSTIDCGDAPGTENTSVDEETGKTVRTVCSGLNGLVPLEEM  310
            LRVG ++ A  HPNAD L V  +D G+                 R + SG   + P EE+
Sbjct  1    LRVGKVVEAERHPNADKLLVCKVDVGEE--------------EPRQIVSGAVNVYPPEEL  46

Query  311  QNRKIVAVCNLKPVTMRGIKSTAMVLAASPRVAEGEDSHAGPVELVTPPADAPAGTR  367
              R +V V NLKP  +RG++S  M+L+A     E +      V L+ PPAD P GT+
Sbjct  47   VGRLVVVVANLKPAKLRGVESEGMILSAE----ELDGGS---VGLLEPPADVPPGTK  96



Lambda      K        H        a         alpha
   0.311    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00013119

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396251 pfam01588, tRNA_bind, Putative tRNA binding domain. Th...  101     1e-26


>CDD:396251 pfam01588, tRNA_bind, Putative tRNA binding domain.  This domain 
is found in prokaryotic methionyl-tRNA synthetases, prokaryotic 
phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding 
protein (G4p1 or p42, ARC1), human tyrosyl-tRNA synthetase, 
and endothelial-monocyte activating polypeptide II. 
G4p1 binds specifically to tRNA form a complex with methionyl-tRNA 
synthetases. In human tyrosyl-tRNA synthetase this domain 
may direct tRNA to the active site of the enzyme. This 
domain may perform a common function in tRNA aminoacylation.
Length=96

 Score = 101 bits (253),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 59/117 (50%), Gaps = 21/117 (18%)

Query  251  LRVGHILRAINHPNADSLYVSTIDCGDAPGTENTSVDEETGKTVRTVCSGLNGLVPLEEM  310
            LRVG ++ A  HPNAD L V  +D G+                 R + SG   + P EE+
Sbjct  1    LRVGKVVEAERHPNADKLLVCKVDVGEE--------------EPRQIVSGAVNVYPPEEL  46

Query  311  QNRKIVAVCNLKPVTMRGIKSTAMVLAASPRVAEGEDSHAGPVELVTPPADAPAGTR  367
              R +V V NLKP  +RG++S  M+L+A     E +      V L+ PPAD P GT+
Sbjct  47   VGRLVVVVANLKPAKLRGVESEGMILSAE----ELDGGS---VGLLEPPADVPPGTK  96



Lambda      K        H        a         alpha
   0.311    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00013120

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396251 pfam01588, tRNA_bind, Putative tRNA binding domain. Th...  101     1e-26


>CDD:396251 pfam01588, tRNA_bind, Putative tRNA binding domain.  This domain 
is found in prokaryotic methionyl-tRNA synthetases, prokaryotic 
phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding 
protein (G4p1 or p42, ARC1), human tyrosyl-tRNA synthetase, 
and endothelial-monocyte activating polypeptide II. 
G4p1 binds specifically to tRNA form a complex with methionyl-tRNA 
synthetases. In human tyrosyl-tRNA synthetase this domain 
may direct tRNA to the active site of the enzyme. This 
domain may perform a common function in tRNA aminoacylation.
Length=96

 Score = 101 bits (253),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 59/117 (50%), Gaps = 21/117 (18%)

Query  251  LRVGHILRAINHPNADSLYVSTIDCGDAPGTENTSVDEETGKTVRTVCSGLNGLVPLEEM  310
            LRVG ++ A  HPNAD L V  +D G+                 R + SG   + P EE+
Sbjct  1    LRVGKVVEAERHPNADKLLVCKVDVGEE--------------EPRQIVSGAVNVYPPEEL  46

Query  311  QNRKIVAVCNLKPVTMRGIKSTAMVLAASPRVAEGEDSHAGPVELVTPPADAPAGTR  367
              R +V V NLKP  +RG++S  M+L+A     E +      V L+ PPAD P GT+
Sbjct  47   VGRLVVVVANLKPAKLRGVESEGMILSAE----ELDGGS---VGLLEPPADVPPGTK  96



Lambda      K        H        a         alpha
   0.311    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00018630

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396251 pfam01588, tRNA_bind, Putative tRNA binding domain. Th...  101     1e-26


>CDD:396251 pfam01588, tRNA_bind, Putative tRNA binding domain.  This domain 
is found in prokaryotic methionyl-tRNA synthetases, prokaryotic 
phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding 
protein (G4p1 or p42, ARC1), human tyrosyl-tRNA synthetase, 
and endothelial-monocyte activating polypeptide II. 
G4p1 binds specifically to tRNA form a complex with methionyl-tRNA 
synthetases. In human tyrosyl-tRNA synthetase this domain 
may direct tRNA to the active site of the enzyme. This 
domain may perform a common function in tRNA aminoacylation.
Length=96

 Score = 101 bits (253),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 59/117 (50%), Gaps = 21/117 (18%)

Query  251  LRVGHILRAINHPNADSLYVSTIDCGDAPGTENTSVDEETGKTVRTVCSGLNGLVPLEEM  310
            LRVG ++ A  HPNAD L V  +D G+                 R + SG   + P EE+
Sbjct  1    LRVGKVVEAERHPNADKLLVCKVDVGEE--------------EPRQIVSGAVNVYPPEEL  46

Query  311  QNRKIVAVCNLKPVTMRGIKSTAMVLAASPRVAEGEDSHAGPVELVTPPADAPAGTR  367
              R +V V NLKP  +RG++S  M+L+A     E +      V L+ PPAD P GT+
Sbjct  47   VGRLVVVVANLKPAKLRGVESEGMILSAE----ELDGGS---VGLLEPPADVPPGTK  96



Lambda      K        H        a         alpha
   0.311    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00018631

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease. Aspartyl...  139     1e-40


>CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease.  Aspartyl (acid) 
proteases include pepsins, cathepsins, and renins. Two-domain 
structure, probably arising from ancestral duplication. 
This family does not include the retroviral nor retrotransposon 
proteases (pfam00077), which are much smaller and appear 
to be homologous to a single domain of the eukaryotic asp proteases.
Length=313

 Score = 139 bits (353),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 74/190 (39%), Positives = 98/190 (52%), Gaps = 11/190 (6%)

Query  6    PASAQVGHTVFDPSKSSTFKKMEGATFEIKYGDSSFANGGVGTDTVDIGGATVTGQAIGI  65
             +SA   H  FDPS SST+K   G TF I YGD S A+G +G DTV +GG T+T Q  G+
Sbjct  35   KSSACKSHGTFDPSSSSTYKL-NGTTFSISYGDGS-ASGFLGQDTVTVGGLTITNQEFGL  92

Query  66   PTSVSNSFVEDTYSNGLVGLGFSSLNTVQPQQQKTFFDNIAD--SLDKPVMTAHLKSD--  121
             T    SF E    +G++GLGF S++ V        FDN+     +D P  + +L S   
Sbjct  93   ATKEPGSFFEYAKFDGILGLGFPSISAV---GATPVFDNLKSQGLIDSPAFSVYLNSPDA  149

Query  122  GVGEYEFGIIDQTKYQGDMINVTVDSSGGFWQFQSAHYKVGDGPIQTIQNNAVAIADTGT  181
              GE  FG +D +KY G +  V V S  G+WQ       VG        +   AI DTGT
Sbjct  150  AGGEIIFGGVDPSKYTGSLTYVPVTSQ-GYWQITLDSVTVGGSTSAC-SSGCQAILDTGT  207

Query  182  SLMLLDDTVV  191
            SL+    ++V
Sbjct  208  SLLYGPTSIV  217



Lambda      K        H        a         alpha
   0.315    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00018632

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease. Aspartyl...  157     6e-47


>CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease.  Aspartyl (acid) 
proteases include pepsins, cathepsins, and renins. Two-domain 
structure, probably arising from ancestral duplication. 
This family does not include the retroviral nor retrotransposon 
proteases (pfam00077), which are much smaller and appear 
to be homologous to a single domain of the eukaryotic asp proteases.
Length=313

 Score = 157 bits (398),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 86/249 (35%), Positives = 119/249 (48%), Gaps = 16/249 (6%)

Query  6    PASAQVGHTVFDPSKSSTFKKMEGATFEIKYGDSSFANGGVGTDTVDIGGATVTGQAIGI  65
             +SA   H  FDPS SST+K   G TF I YGD S A+G +G DTV +GG T+T Q  G+
Sbjct  35   KSSACKSHGTFDPSSSSTYKL-NGTTFSISYGDGS-ASGFLGQDTVTVGGLTITNQEFGL  92

Query  66   PTSVSNSFVEDTYSNGLVGLGFSSLNTVQPQQQKTFFDNIAD--SLDKPVMTAHLKSD--  121
             T    SF E    +G++GLGF S++ V        FDN+     +D P  + +L S   
Sbjct  93   ATKEPGSFFEYAKFDGILGLGFPSISAV---GATPVFDNLKSQGLIDSPAFSVYLNSPDA  149

Query  122  GVGEYEFGIIDQTKYQGDMINVTVDSSGGFWQFQSAHYKVGDGPIQTIQNNAVAIADTGT  181
              GE  FG +D +KY G +  V V S  G+WQ       VG        +   AI DTGT
Sbjct  150  AGGEIIFGGVDPSKYTGSLTYVPVTSQ-GYWQITLDSVTVGGSTSAC-SSGCQAILDTGT  207

Query  182  SLMLLDDTVVNAYYAQVKGAQYASSAGGYIYPCNTE--LPNLAVAVGAKHLATVPGTFLD  239
            SL+    ++V+     V  +   S  G Y+  C++   LP++   +G     TVP +   
Sbjct  208  SLLYGPTSIVSKIAKAVGASS--SEYGEYVVDCDSISTLPDITFVIGGAK-ITVPPSAYV  264

Query  240  FAEVGINKT  248
                    T
Sbjct  265  LQNSQGGST  273



Lambda      K        H        a         alpha
   0.314    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00018633

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease. Aspartyl...  130     1e-37


>CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease.  Aspartyl (acid) 
proteases include pepsins, cathepsins, and renins. Two-domain 
structure, probably arising from ancestral duplication. 
This family does not include the retroviral nor retrotransposon 
proteases (pfam00077), which are much smaller and appear 
to be homologous to a single domain of the eukaryotic asp proteases.
Length=313

 Score = 130 bits (329),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 71/180 (39%), Positives = 92/180 (51%), Gaps = 11/180 (6%)

Query  6    PASAQVGHTVFDPSKSSTFKKMEGATFEIKYGDSSFANGGVGTDTVDIGGATVTGQAIGI  65
             +SA   H  FDPS SST+K   G TF I YGD S A+G +G DTV +GG T+T Q  G+
Sbjct  35   KSSACKSHGTFDPSSSSTYKL-NGTTFSISYGDGS-ASGFLGQDTVTVGGLTITNQEFGL  92

Query  66   PTSVSNSFVEDTYSNGLVGLGFSSLNTVQPQQQKTFFDNIAD--SLDKPVMTAHLKSD--  121
             T    SF E    +G++GLGF S++ V        FDN+     +D P  + +L S   
Sbjct  93   ATKEPGSFFEYAKFDGILGLGFPSISAV---GATPVFDNLKSQGLIDSPAFSVYLNSPDA  149

Query  122  GVGEYEFGIIDQTKYQGDMINVTVDSSGGFWQFQSAHYKVGDGPIQTIQNNAVAIADTGT  181
              GE  FG +D +KY G +  V V S  G+WQ       VG        +   AI DTGT
Sbjct  150  AGGEIIFGGVDPSKYTGSLTYVPVTSQ-GYWQITLDSVTVGGSTSAC-SSGCQAILDTGT  207



Lambda      K        H        a         alpha
   0.314    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00013121

Length=970
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase. The S...  149     5e-43


>CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase.  The S. cerevisiae 
phospholipid methyltransferase (EC:2.1.1.16) has a broad 
substrate specificity of unsaturated phospholipids.
Length=105

 Score = 149 bits (379),  Expect = 5e-43, Method: Composition-based stats.
 Identities = 51/105 (49%), Positives = 63/105 (60%), Gaps = 0/105 (0%)

Query  504  LRHVLGAGLIALQIWTSVSIYESLGEFGWFYGDFFFDESPKLTYDGIYRFLNNPERVLGL  563
            LR +LG  LIAL +W  +S Y +LG FG FYGDFF     KL   G YR+LNNP  V G 
Sbjct  1    LRLILGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGT  60

Query  564  AGVWGAVLITSSGAVTFLALMSHILSLGFIQFVERPHMQKLYGRS  608
             G  G  LIT S A   LAL+  ++    ++FVE PHM K+YG+ 
Sbjct  61   LGFLGLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIYGKR  105


 Score = 88.0 bits (219),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 31/98 (32%), Positives = 54/98 (55%), Gaps = 0/98 (0%)

Query  233  AGIVLVLFNLWVKLDAHRVVKDYAWYWGDFFFLIDQELTFDGVFEMAPHPMYSVGYAGYY  292
             G++L+   LW+ L ++R +  +  ++GDFF ++  +L   G +    +PMY  G  G+ 
Sbjct  5    LGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGTLGFL  64

Query  293  GISLMAASYKVLFISILAHAAQFAFLVFVENPHIEKTY  330
            G++L+  S   L +++L     F  L FVE PH+ K Y
Sbjct  65   GLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIY  102



Lambda      K        H        a         alpha
   0.321    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1237475624


Query= TCONS_00013122

Length=997
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase. The S...  149     7e-43


>CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase.  The S. cerevisiae 
phospholipid methyltransferase (EC:2.1.1.16) has a broad 
substrate specificity of unsaturated phospholipids.
Length=105

 Score = 149 bits (378),  Expect = 7e-43, Method: Composition-based stats.
 Identities = 51/105 (49%), Positives = 63/105 (60%), Gaps = 0/105 (0%)

Query  504  LRHVLGAGLIALQIWTSVSIYESLGEFGWFYGDFFFDESPKLTYDGIYRFLNNPERVLGL  563
            LR +LG  LIAL +W  +S Y +LG FG FYGDFF     KL   G YR+LNNP  V G 
Sbjct  1    LRLILGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGT  60

Query  564  AGVWGAVLITSSGAVTFLALMSHILSLGFIQFVERPHMQKLYGRS  608
             G  G  LIT S A   LAL+  ++    ++FVE PHM K+YG+ 
Sbjct  61   LGFLGLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIYGKR  105


 Score = 87.6 bits (218),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 31/98 (32%), Positives = 54/98 (55%), Gaps = 0/98 (0%)

Query  233  AGIVLVLFNLWVKLDAHRVVKDYAWYWGDFFFLIDQELTFDGVFEMAPHPMYSVGYAGYY  292
             G++L+   LW+ L ++R +  +  ++GDFF ++  +L   G +    +PMY  G  G+ 
Sbjct  5    LGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGTLGFL  64

Query  293  GISLMAASYKVLFISILAHAAQFAFLVFVENPHIEKTY  330
            G++L+  S   L +++L     F  L FVE PH+ K Y
Sbjct  65   GLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIY  102



Lambda      K        H        a         alpha
   0.322    0.137    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1275704276


Query= TCONS_00018634

Length=970
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase. The S...  149     5e-43


>CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase.  The S. cerevisiae 
phospholipid methyltransferase (EC:2.1.1.16) has a broad 
substrate specificity of unsaturated phospholipids.
Length=105

 Score = 149 bits (379),  Expect = 5e-43, Method: Composition-based stats.
 Identities = 51/105 (49%), Positives = 63/105 (60%), Gaps = 0/105 (0%)

Query  504  LRHVLGAGLIALQIWTSVSIYESLGEFGWFYGDFFFDESPKLTYDGIYRFLNNPERVLGL  563
            LR +LG  LIAL +W  +S Y +LG FG FYGDFF     KL   G YR+LNNP  V G 
Sbjct  1    LRLILGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGT  60

Query  564  AGVWGAVLITSSGAVTFLALMSHILSLGFIQFVERPHMQKLYGRS  608
             G  G  LIT S A   LAL+  ++    ++FVE PHM K+YG+ 
Sbjct  61   LGFLGLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIYGKR  105


 Score = 88.0 bits (219),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 31/98 (32%), Positives = 54/98 (55%), Gaps = 0/98 (0%)

Query  233  AGIVLVLFNLWVKLDAHRVVKDYAWYWGDFFFLIDQELTFDGVFEMAPHPMYSVGYAGYY  292
             G++L+   LW+ L ++R +  +  ++GDFF ++  +L   G +    +PMY  G  G+ 
Sbjct  5    LGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGTLGFL  64

Query  293  GISLMAASYKVLFISILAHAAQFAFLVFVENPHIEKTY  330
            G++L+  S   L +++L     F  L FVE PH+ K Y
Sbjct  65   GLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIY  102



Lambda      K        H        a         alpha
   0.321    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1237475624


Query= TCONS_00013123

Length=853
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase. The S...  146     4e-42


>CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase.  The S. cerevisiae 
phospholipid methyltransferase (EC:2.1.1.16) has a broad 
substrate specificity of unsaturated phospholipids.
Length=105

 Score = 146 bits (372),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 51/105 (49%), Positives = 63/105 (60%), Gaps = 0/105 (0%)

Query  435  LRHVLGAGLIALQIWTSVSIYESLGEFGWFYGDFFFDESPKLTYDGIYRFLNNPERVLGL  494
            LR +LG  LIAL +W  +S Y +LG FG FYGDFF     KL   G YR+LNNP  V G 
Sbjct  1    LRLILGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGT  60

Query  495  AGVWGAVLITSSGAVTFLALMSHILSLGFIQFVERPHMQKLYGRS  539
             G  G  LIT S A   LAL+  ++    ++FVE PHM K+YG+ 
Sbjct  61   LGFLGLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIYGKR  105


 Score = 86.5 bits (215),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 31/98 (32%), Positives = 54/98 (55%), Gaps = 0/98 (0%)

Query  164  AGIVLVLFNLWVKLDAHRVVKDYAWYWGDFFFLIDQELTFDGVFEMAPHPMYSVGYAGYY  223
             G++L+   LW+ L ++R +  +  ++GDFF ++  +L   G +    +PMY  G  G+ 
Sbjct  5    LGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGTLGFL  64

Query  224  GISLMAASYKVLFISILAHAAQFAFLVFVENPHIEKTY  261
            G++L+  S   L +++L     F  L FVE PH+ K Y
Sbjct  65   GLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIY  102



Lambda      K        H        a         alpha
   0.323    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1088119612


Query= TCONS_00013124

Length=922
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase. The S...  148     9e-43


>CDD:461218 pfam04191, PEMT, Phospholipid methyltransferase.  The S. cerevisiae 
phospholipid methyltransferase (EC:2.1.1.16) has a broad 
substrate specificity of unsaturated phospholipids.
Length=105

 Score = 148 bits (377),  Expect = 9e-43, Method: Composition-based stats.
 Identities = 51/105 (49%), Positives = 63/105 (60%), Gaps = 0/105 (0%)

Query  504  LRHVLGAGLIALQIWTSVSIYESLGEFGWFYGDFFFDESPKLTYDGIYRFLNNPERVLGL  563
            LR +LG  LIAL +W  +S Y +LG FG FYGDFF     KL   G YR+LNNP  V G 
Sbjct  1    LRLILGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGT  60

Query  564  AGVWGAVLITSSGAVTFLALMSHILSLGFIQFVERPHMQKLYGRS  608
             G  G  LIT S A   LAL+  ++    ++FVE PHM K+YG+ 
Sbjct  61   LGFLGLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIYGKR  105


 Score = 87.6 bits (218),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 31/98 (32%), Positives = 54/98 (55%), Gaps = 0/98 (0%)

Query  233  AGIVLVLFNLWVKLDAHRVVKDYAWYWGDFFFLIDQELTFDGVFEMAPHPMYSVGYAGYY  292
             G++L+   LW+ L ++R +  +  ++GDFF ++  +L   G +    +PMY  G  G+ 
Sbjct  5    LGLLLIALGLWLVLSSYRALGIFGTFYGDFFGILMDKLVTGGPYRYLNNPMYVGGTLGFL  64

Query  293  GISLMAASYKVLFISILAHAAQFAFLVFVENPHIEKTY  330
            G++L+  S   L +++L     F  L FVE PH+ K Y
Sbjct  65   GLALITGSPAGLLLALLVLLVYFIALKFVEEPHMAKIY  102



Lambda      K        H        a         alpha
   0.322    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0741    0.140     1.90     42.6     43.6 

Effective search space used: 1187170078


Query= TCONS_00013125

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426074 pfam01138, RNase_PH, 3' exoribonuclease family, domain...  76.1    1e-17


>CDD:426074 pfam01138, RNase_PH, 3' exoribonuclease family, domain 1.  This 
family includes 3'-5' exoribonucleases. Ribonuclease PH contains 
a single copy of this domain, and removes nucleotide 
residues following the -CCA terminus of tRNA. Polyribonucleotide 
nucleotidyltransferase (PNPase) contains two tandem copies 
of the domain. PNPase is involved in mRNA degradation in 
a 3'-5' direction. The exosome is a 3'-5' exoribonuclease 
complex that is required for 3' processing of the 5.8S rRNA. 
Three of its five protein components contain a copy of this 
domain. A hypothetical protein from S. pombe appears to belong 
to an uncharacterized subfamily. This subfamily is found 
in both eukaryotes and archaebacteria.
Length=129

 Score = 76.1 bits (188),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 56/128 (44%), Gaps = 22/128 (17%)

Query  42   ELRKIFLKTGLIPSASGSSYLEFEPSASLAAARSSPQSLIPPSSALKLACTVHGPKPLPR  101
            ELR I ++TG++  A GS+ +E                        K+  TV GP     
Sbjct  1    ELRPIEIETGVLSQADGSALVELG--------------------DTKVLATVTGPIEPKE  40

Query  102  SATFSPNLVLTTHVKYAPFAARRRKGHIR-DTSERDLGVHLETALRGVIVAERWPKSGLD  160
               F+P   LT   + APFA+  R G  R    E ++   ++ ALR  I  E +P+  + 
Sbjct  41   DRDFAPG-RLTVEYELAPFASGERPGEGRPSEREIEISRLIDRALRPSIPLEGYPRWTIR  99

Query  161  ITITILEA  168
            I +T+L +
Sbjct  100  IDVTVLSS  107



Lambda      K        H        a         alpha
   0.316    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00018635

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00013126

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426074 pfam01138, RNase_PH, 3' exoribonuclease family, domain...  76.1    1e-17


>CDD:426074 pfam01138, RNase_PH, 3' exoribonuclease family, domain 1.  This 
family includes 3'-5' exoribonucleases. Ribonuclease PH contains 
a single copy of this domain, and removes nucleotide 
residues following the -CCA terminus of tRNA. Polyribonucleotide 
nucleotidyltransferase (PNPase) contains two tandem copies 
of the domain. PNPase is involved in mRNA degradation in 
a 3'-5' direction. The exosome is a 3'-5' exoribonuclease 
complex that is required for 3' processing of the 5.8S rRNA. 
Three of its five protein components contain a copy of this 
domain. A hypothetical protein from S. pombe appears to belong 
to an uncharacterized subfamily. This subfamily is found 
in both eukaryotes and archaebacteria.
Length=129

 Score = 76.1 bits (188),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 56/128 (44%), Gaps = 22/128 (17%)

Query  42   ELRKIFLKTGLIPSASGSSYLEFEPSASLAAARSSPQSLIPPSSALKLACTVHGPKPLPR  101
            ELR I ++TG++  A GS+ +E                        K+  TV GP     
Sbjct  1    ELRPIEIETGVLSQADGSALVELG--------------------DTKVLATVTGPIEPKE  40

Query  102  SATFSPNLVLTTHVKYAPFAARRRKGHIR-DTSERDLGVHLETALRGVIVAERWPKSGLD  160
               F+P   LT   + APFA+  R G  R    E ++   ++ ALR  I  E +P+  + 
Sbjct  41   DRDFAPG-RLTVEYELAPFASGERPGEGRPSEREIEISRLIDRALRPSIPLEGYPRWTIR  99

Query  161  ITITILEA  168
            I +T+L +
Sbjct  100  IDVTVLSS  107



Lambda      K        H        a         alpha
   0.316    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00018636

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426074 pfam01138, RNase_PH, 3' exoribonuclease family, domain...  68.8    5e-15


>CDD:426074 pfam01138, RNase_PH, 3' exoribonuclease family, domain 1.  This 
family includes 3'-5' exoribonucleases. Ribonuclease PH contains 
a single copy of this domain, and removes nucleotide 
residues following the -CCA terminus of tRNA. Polyribonucleotide 
nucleotidyltransferase (PNPase) contains two tandem copies 
of the domain. PNPase is involved in mRNA degradation in 
a 3'-5' direction. The exosome is a 3'-5' exoribonuclease 
complex that is required for 3' processing of the 5.8S rRNA. 
Three of its five protein components contain a copy of this 
domain. A hypothetical protein from S. pombe appears to belong 
to an uncharacterized subfamily. This subfamily is found 
in both eukaryotes and archaebacteria.
Length=129

 Score = 68.8 bits (169),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 55/128 (43%), Gaps = 22/128 (17%)

Query  42   ELRKICEKTGLIPSASGSSYLEFEPSASLAAARSSPQSLIPPSSALKLACTVHGPKPLPR  101
            ELR I  +TG++  A GS+ +E                        K+  TV GP     
Sbjct  1    ELRPIEIETGVLSQADGSALVELG--------------------DTKVLATVTGPIEPKE  40

Query  102  SATFSPNLVLTTHVKYAPFAARRRKGHIR-DTSERDLGVHLETALRGVIVAERWPKSGLD  160
               F+P   LT   + APFA+  R G  R    E ++   ++ ALR  I  E +P+  + 
Sbjct  41   DRDFAPG-RLTVEYELAPFASGERPGEGRPSEREIEISRLIDRALRPSIPLEGYPRWTIR  99

Query  161  ITITILEA  168
            I +T+L +
Sbjct  100  IDVTVLSS  107



Lambda      K        H        a         alpha
   0.315    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00013127

Length=703


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 899621900


Query= TCONS_00018638

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00013128

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00013129

Length=425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462709 pfam09180, ProRS-C_1, Prolyl-tRNA synthetase, C-termin...  93.7    2e-24
CDD:460819 pfam03129, HGTP_anticodon, Anticodon binding domain. T...  65.7    4e-14
CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core...  67.4    9e-14


>CDD:462709 pfam09180, ProRS-C_1, Prolyl-tRNA synthetase, C-terminal.  Members 
of this family are predominantly found in prokaryotic 
prolyl-tRNA synthetase. They contain a zinc binding site, and 
adopt a structure consisting of alpha helices and antiparallel 
beta sheets arranged in 2 layers, in a beta-alpha-beta-alpha-beta 
motif.
Length=67

 Score = 93.7 bits (234),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 33/90 (37%), Positives = 42/90 (47%), Gaps = 25/90 (28%)

Query  312  WDDFTPALNEKNICVIPHCLTEECEDQIKELSARKAEEDSGVPQDARAPSMGAKSLCIPF  371
            W++F  AL EK   + P C  EECED+IKE +                   GA S CIPF
Sbjct  1    WEEFKEALEEKGFVLAPWCGDEECEDKIKEET-------------------GATSRCIPF  41

Query  372  DQPEGIVHGQTKCVNPKCTRMAEKWCMFGR  401
            DQ         KC+   C + A+KW +F R
Sbjct  42   DQE----EEGGKCIV--CGKPAKKWVLFAR  65


>CDD:460819 pfam03129, HGTP_anticodon, Anticodon binding domain.  This domain 
is found in histidyl, glycyl, threonyl and prolyl tRNA 
synthetases it is probably the anticodon binding domain.
Length=94

 Score = 65.7 bits (161),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 51/105 (49%), Gaps = 11/105 (10%)

Query  182  QTIIVPVGITAKTSDEEREKLYAEIDSLVSLLKAAGIRADSDKREGYSPGWKFNDWELRG  241
            Q +++P+G  A+  +E  +KL  E       L+AAGIR + D R   S G KF   +L G
Sbjct  1    QVVVIPLGEKAEELEEYAQKLAEE-------LRAAGIRVELDDRNE-SIGKKFRRADLIG  52

Query  242  VPLRIEFGPGESVGRYVTAARRDIPGKDGKSTIPIDELSTAVPAL  286
            +P  +  G  E     VT  RRD      + T+ +DEL   +  L
Sbjct  53   IPFALVVGEKELEEGTVTVRRRD---TGEQETVSLDELVEKLKEL  94


>CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain 
(G, H, P, S and T).  tRNA-synt_2b is a family of largely threonyl-tRNA 
members.
Length=181

 Score = 67.4 bits (165),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 43/162 (27%), Positives = 71/162 (44%), Gaps = 10/162 (6%)

Query  7    KWIRSHRDLPLKLNQWNSVVRWEFKHPQ-PFLRTREFLWQEGHTAHLTEEAAREEVLHML  65
            + +RS +DLPLKL Q+ +  R E        +R R+F   + H  H     + +E+   +
Sbjct  28   EGLRS-KDLPLKLAQFGTCFRHEASGDTRGLIRVRQFHQDDAHIFH-APGQSPDELEDYI  85

Query  66   NLYARIYEEL-LAVPVVKGQKTEKEKFAGGLYTTTVEGYIPATGRGIQGGTSHGLGQNFS  124
             L  R+Y  L L V VV+   ++   F G       E   P+ G+  Q GT    G    
Sbjct  86   KLIDRVYSRLGLEVRVVRLSNSDGSAFYG--PKLDFEVVFPSLGKQRQTGTIQNDGFRLP  143

Query  125  KMFGITVEDPSAKPDEKKPPLHVWQNSWGLSTRTLGVMVMIH  166
            +  GI  +D   + +E K P  + +   G+  R L  ++  +
Sbjct  144  RRLGIRYKD---EDNESKFPYMIHRAGLGV-ERFLAAILENN  181



Lambda      K        H        a         alpha
   0.318    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521922912


Query= TCONS_00013130

Length=703


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 899621900


Query= TCONS_00018640

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  396     1e-135


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 396 bits (1020),  Expect = 1e-135, Method: Composition-based stats.
 Identities = 167/421 (40%), Positives = 251/421 (60%), Gaps = 30/421 (7%)

Query  5    IHPTTIINGYRLALREAVKYMNENITTKVDALGKDSLVNIAKTSMSSKIIGADADFFANM  64
            +HPTTII GY  AL +A++ ++  I+  V+ + ++ L+ +A+TS+SSKII  ++DF A +
Sbjct  85   VHPTTIIEGYEKALEKALEILDSIISIPVEDVDREDLLKVARTSLSSKIISRESDFLAKL  144

Query  65   VVDAMLLVKTTNQKNEVKYPVKAVNLLKAHGKSGTESMLVKGYALNCTVASQAMKTRITD  124
            VVDA+L +     KN+  + +  + ++K  G S  +S LV G  L+       M  R+ +
Sbjct  145  VVDAVLAIP----KNDGSFDLGNIGVVKILGGSLEDSELVDGVVLDKGPLHPDMPKRLEN  200

Query  125  AKIACLDMNLQKERMKLGVQITVDDPDQLEKIRERESGIVLERVEMILKSGANVIFTTKG  184
            AK+  L+ +L+ E+ +    + + D +QLE+  + E   +LE VE I+ SG NV+   KG
Sbjct  201  AKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKAEEEQILEIVEKIIDSGVNVVVCQKG  260

Query  185  IDDMVLKLFVERGAMAVRRCKKEDLRRIAKATGATLVSSLSDLNGDEKFDASNLGYAEEV  244
            IDD+ L    + G MA+RR KK DL R+AKATGA  VSSL DL  D+      LG A +V
Sbjct  261  IDDLALHFLAKNGIMALRRVKKRDLERLAKATGARAVSSLDDLTPDD------LGTAGKV  314

Query  245  VQERISDDECILVKGTKVHTSASIILRGPNDYSLDEMERSVHDSLCAVKRTLESGSIVPG  304
             +E+I D++   ++G K   +A+I+LRG  D+ LDE+ERS+HD+LC VK  +E   +VPG
Sbjct  315  EEEKIGDEKYTFIEGCKSPKAATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPG  374

Query  305  GGAVETALHIYLEEFAVTVGSREQLAIGEFAQSLLIVPKTLAVNAAKDSSELVAQLRSRH  364
            GGAVE  L   L E+A +V  +EQLAI  FA++L ++PKTLA NA  D  E++A+LR+ H
Sbjct  375  GGAVEMELARALREYAKSVSGKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAH  434

Query  365  WASQRIEESPANKDDKAIVKKKNYKNYGLDLTKGRVHDCIKAGVLEPSMGKVKQFKSAVE  424
                                    K+ G+D+  G + D  +AGV++P   K +  KSA E
Sbjct  435  --------------------ASGEKHAGIDVETGEIIDMKEAGVVDPLKVKRQALKSATE  474

Query  425  A  425
            A
Sbjct  475  A  475



Lambda      K        H        a         alpha
   0.315    0.131    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00013131

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  534     0.0  


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 534 bits (1379),  Expect = 0.0, Method: Composition-based stats.
 Identities = 222/517 (43%), Positives = 327/517 (63%), Gaps = 30/517 (6%)

Query  37   IANVVKSSFGPSGLDKMMVDDIGDVTVTNDGATILSLLDIEHPAGKILVDLAQQQDKEVG  96
            +A++V++S GP G+DKM+V+  GDVTVTNDGATIL  L+I+HPA K+LV+ A+ QD+EVG
Sbjct  1    LADIVRTSLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVG  60

Query  97   DGTTSVVLIAAELLRRANELMKNRIHPTTIINGYRLALREAVKYMNENITTKVDALGKDS  156
            DGTT+VV++A ELL  A +L+   +HPTTII GY  AL +A++ ++  I+  V+ + ++ 
Sbjct  61   DGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSIISIPVEDVDRED  120

Query  157  LVNIAKTSMSSKIIGADADFFANMVVDAMLLVKTTNQKNEVKYPVKAVNLLKAHGKSGTE  216
            L+ +A+TS+SSKII  ++DF A +VVDA+L +     KN+  + +  + ++K  G S  +
Sbjct  121  LLKVARTSLSSKIISRESDFLAKLVVDAVLAIP----KNDGSFDLGNIGVVKILGGSLED  176

Query  217  SMLVKGYALNCTVASQAMKTRITDAKIACLDMNLQKERMKLGVQITVDDPDQLEKIRERE  276
            S LV G  L+       M  R+ +AK+  L+ +L+ E+ +    + + D +QLE+  + E
Sbjct  177  SELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKAE  236

Query  277  SGIVLERVEMILKSGANVIFTTKGIDDMVLKLFVERGAMAVRRCKKEDLRRIAKATGATL  336
               +LE VE I+ SG NV+   KGIDD+ L    + G MA+RR KK DL R+AKATGA  
Sbjct  237  EEQILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRVKKRDLERLAKATGARA  296

Query  337  VSSLSDLNGDEKFDASNLGYAEEVVQERISDDECILVKGTKVHTSASIILRGPNDYSLDE  396
            VSSL DL  D+      LG A +V +E+I D++   ++G K   +A+I+LRG  D+ LDE
Sbjct  297  VSSLDDLTPDD------LGTAGKVEEEKIGDEKYTFIEGCKSPKAATILLRGATDHVLDE  350

Query  397  MERSVHDSLCAVKRTLESGSIVPGGGAVETALHIYLEEFAVTVGSREQLAIGEFAQSLLI  456
            +ERS+HD+LC VK  +E   +VPGGGAVE  L   L E+A +V  +EQLAI  FA++L +
Sbjct  351  IERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEALEV  410

Query  457  VPKTLAVNAAKDSSELVAQLRSRHWASQRIEESPANKDDKAIVKKKNYKNYGLDLTKGRV  516
            +PKTLA NA  D  E++A+LR+ H                        K+ G+D+  G +
Sbjct  411  IPKTLAENAGLDPIEVLAELRAAH--------------------ASGEKHAGIDVETGEI  450

Query  517  HDCIKAGVLEPSMGKVKQFKSAVEACIAIMRIDTMIK  553
             D  +AGV++P   K +  KSA EA   I+RID +IK
Sbjct  451  IDMKEAGVVDPLKVKRQALKSATEAASTILRIDDIIK  487



Lambda      K        H        a         alpha
   0.316    0.132    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00018641

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  532     0.0  


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 532 bits (1374),  Expect = 0.0, Method: Composition-based stats.
 Identities = 222/517 (43%), Positives = 327/517 (63%), Gaps = 30/517 (6%)

Query  13   IANVVKSSFGPSGLDKMMVDDIGDVTVTNDGATILSLLDIEHPAGKILVDLAQQQDKEVG  72
            +A++V++S GP G+DKM+V+  GDVTVTNDGATIL  L+I+HPA K+LV+ A+ QD+EVG
Sbjct  1    LADIVRTSLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVG  60

Query  73   DGTTSVVLIAAELLRRANELMKNRIHPTTIINGYRLALREAVKYMNENITTKVDALGKDS  132
            DGTT+VV++A ELL  A +L+   +HPTTII GY  AL +A++ ++  I+  V+ + ++ 
Sbjct  61   DGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSIISIPVEDVDRED  120

Query  133  LVNIAKTSMSSKIIGADADFFANMVVDAMLLVKTTNQKNEVKYPVKAVNLLKAHGKSGTE  192
            L+ +A+TS+SSKII  ++DF A +VVDA+L +     KN+  + +  + ++K  G S  +
Sbjct  121  LLKVARTSLSSKIISRESDFLAKLVVDAVLAIP----KNDGSFDLGNIGVVKILGGSLED  176

Query  193  SMLVKGYALNCTVASQAMKTRITDAKIACLDMNLQKERMKLGVQITVDDPDQLEKIRERE  252
            S LV G  L+       M  R+ +AK+  L+ +L+ E+ +    + + D +QLE+  + E
Sbjct  177  SELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKAE  236

Query  253  SGIVLERVEMILKSGANVIFTTKGIDDMVLKLFVERGAMAVRRCKKEDLRRIAKATGATL  312
               +LE VE I+ SG NV+   KGIDD+ L    + G MA+RR KK DL R+AKATGA  
Sbjct  237  EEQILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRVKKRDLERLAKATGARA  296

Query  313  VSSLSDLNGDEKFDASNLGYAEEVVQERISDDECILVKGTKVHTSASIILRGPNDYSLDE  372
            VSSL DL  D+      LG A +V +E+I D++   ++G K   +A+I+LRG  D+ LDE
Sbjct  297  VSSLDDLTPDD------LGTAGKVEEEKIGDEKYTFIEGCKSPKAATILLRGATDHVLDE  350

Query  373  MERSVHDSLCAVKRTLESGSIVPGGGAVETALHIYLEEFAVTVGSREQLAIGEFAQSLLI  432
            +ERS+HD+LC VK  +E   +VPGGGAVE  L   L E+A +V  +EQLAI  FA++L +
Sbjct  351  IERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEALEV  410

Query  433  VPKTLAVNAAKDSSELVAQLRSRHWASQRIEESPANKDDKAIVKKKNYKNYGLDLTKGRV  492
            +PKTLA NA  D  E++A+LR+ H                        K+ G+D+  G +
Sbjct  411  IPKTLAENAGLDPIEVLAELRAAH--------------------ASGEKHAGIDVETGEI  450

Query  493  HDCIKAGVLEPSMGKVKQFKSAVEACIAIMRIDTMIK  529
             D  +AGV++P   K +  KSA EA   I+RID +IK
Sbjct  451  IDMKEAGVVDPLKVKRQALKSATEAASTILRIDDIIK  487



Lambda      K        H        a         alpha
   0.316    0.131    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682843766


Query= TCONS_00013132

Length=442
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  445     1e-154


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 445 bits (1147),  Expect = 1e-154, Method: Composition-based stats.
 Identities = 180/403 (45%), Positives = 266/403 (66%), Gaps = 10/403 (2%)

Query  37   IANVVKSSFGPSGLDKMMVDDIGDVTVTNDGATILSLLDIEHPAGKILVDLAQQQDKEVG  96
            +A++V++S GP G+DKM+V+  GDVTVTNDGATIL  L+I+HPA K+LV+ A+ QD+EVG
Sbjct  1    LADIVRTSLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVG  60

Query  97   DGTTSVVLIAAELLRRANELMKNRIHPTTIINGYRLALREAVKYMNENITTKVDALGKDS  156
            DGTT+VV++A ELL  A +L+   +HPTTII GY  AL +A++ ++  I+  V+ + ++ 
Sbjct  61   DGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSIISIPVEDVDRED  120

Query  157  LVNIAKTSMSSKIIGADADFFANMVVDAMLLVKTTNQKNEVKYPVKAVNLLKAHGKSGTE  216
            L+ +A+TS+SSKII  ++DF A +VVDA+L +     KN+  + +  + ++K  G S  +
Sbjct  121  LLKVARTSLSSKIISRESDFLAKLVVDAVLAIP----KNDGSFDLGNIGVVKILGGSLED  176

Query  217  SMLVKGYALNCTVASQAMKTRITDAKIACLDMNLQKERMKLGVQITVDDPDQLEKIRERE  276
            S LV G  L+       M  R+ +AK+  L+ +L+ E+ +    + + D +QLE+  + E
Sbjct  177  SELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKAE  236

Query  277  SGIVLERVEMILKSGANVIFTTKGIDDMVLKLFVERGAMAVRRCKKEDLRRIAKATGATL  336
               +LE VE I+ SG NV+   KGIDD+ L    + G MA+RR KK DL R+AKATGA  
Sbjct  237  EEQILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRVKKRDLERLAKATGARA  296

Query  337  VSSLSDLNGDEKFDASNLGYAEEVVQERISDDECILVKGTKVHTSASIILRGPNDYSLDE  396
            VSSL DL  D+      LG A +V +E+I D++   ++G K   +A+I+LRG  D+ LDE
Sbjct  297  VSSLDDLTPDD------LGTAGKVEEEKIGDEKYTFIEGCKSPKAATILLRGATDHVLDE  350

Query  397  MERSVHDSLCAVKRTLESGSIVPGGGAVETALHIYLEEFAVTV  439
            +ERS+HD+LC VK  +E   +VPGGGAVE  L   L E+A +V
Sbjct  351  IERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSV  393



Lambda      K        H        a         alpha
   0.316    0.132    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 539863808


Query= TCONS_00018642

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  528     0.0  


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 528 bits (1363),  Expect = 0.0, Method: Composition-based stats.
 Identities = 219/517 (42%), Positives = 324/517 (63%), Gaps = 30/517 (6%)

Query  37   IANVVKSSFGPSGLDKMMVDDIGVSIVTNDGATILSLLDIEHPAGKILVDLAQQQDKEVG  96
            +A++V++S GP G+DKM+V+  G   VTNDGATIL  L+I+HPA K+LV+ A+ QD+EVG
Sbjct  1    LADIVRTSLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVG  60

Query  97   DGTTSVVLIAAELLRRANELMKNRIHPTTIINGYRLALREAVKYMNENITTKVDALGKDS  156
            DGTT+VV++A ELL  A +L+   +HPTTII GY  AL +A++ ++  I+  V+ + ++ 
Sbjct  61   DGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSIISIPVEDVDRED  120

Query  157  LVNIAKTSMSSKIIGADADFFANMVVDAMLLVKTTNQKNEVKYPVKAVNLLKAHGKSGTE  216
            L+ +A+TS+SSKII  ++DF A +VVDA+L +     KN+  + +  + ++K  G S  +
Sbjct  121  LLKVARTSLSSKIISRESDFLAKLVVDAVLAIP----KNDGSFDLGNIGVVKILGGSLED  176

Query  217  SMLVKGYALNCTVASQAMKTRITDAKIACLDMNLQKERMKLGVQITVDDPDQLEKIRERE  276
            S LV G  L+       M  R+ +AK+  L+ +L+ E+ +    + + D +QLE+  + E
Sbjct  177  SELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKAE  236

Query  277  SGIVLERVEMILKSGANVIFTTKGIDDMVLKLFVERGAMAVRRCKKEDLRRIAKATGATL  336
               +LE VE I+ SG NV+   KGIDD+ L    + G MA+RR KK DL R+AKATGA  
Sbjct  237  EEQILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRVKKRDLERLAKATGARA  296

Query  337  VSSLSDLNGDEKFDASNLGYAEEVVQERISDDECILVKGTKVHTSASIILRGPNDYSLDE  396
            VSSL DL  D+      LG A +V +E+I D++   ++G K   +A+I+LRG  D+ LDE
Sbjct  297  VSSLDDLTPDD------LGTAGKVEEEKIGDEKYTFIEGCKSPKAATILLRGATDHVLDE  350

Query  397  MERSVHDSLCAVKRTLESGSIVPGGGAVETALHIYLEEFAVTVGSREQLAIGEFAQSLLI  456
            +ERS+HD+LC VK  +E   +VPGGGAVE  L   L E+A +V  +EQLAI  FA++L +
Sbjct  351  IERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEALEV  410

Query  457  VPKTLAVNAAKDSSELVAQLRSRHWASQRIEESPANKDDKAIVKKKNYKNYGLDLTKGRV  516
            +PKTLA NA  D  E++A+LR+ H                        K+ G+D+  G +
Sbjct  411  IPKTLAENAGLDPIEVLAELRAAH--------------------ASGEKHAGIDVETGEI  450

Query  517  HDCIKAGVLEPSMGKVKQFKSAVEACIAIMRIDTMIK  553
             D  +AGV++P   K +  KSA EA   I+RID +IK
Sbjct  451  IDMKEAGVVDPLKVKRQALKSATEAASTILRIDDIIK  487



Lambda      K        H        a         alpha
   0.316    0.132    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00013133

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  408     7e-140


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 408 bits (1050),  Expect = 7e-140, Method: Composition-based stats.
 Identities = 173/433 (40%), Positives = 259/433 (60%), Gaps = 30/433 (7%)

Query  5    IHPTTIINGYRLALREAVKYMNENITTKVDALGKDSLVNIAKTSMSSKIIGADADFFANM  64
            +HPTTII GY  AL +A++ ++  I+  V+ + ++ L+ +A+TS+SSKII  ++DF A +
Sbjct  85   VHPTTIIEGYEKALEKALEILDSIISIPVEDVDREDLLKVARTSLSSKIISRESDFLAKL  144

Query  65   VVDAMLLVKTTNQKNEVKYPVKAVNLLKAHGKSGTESMLVKGYALNCTVASQAMKTRITD  124
            VVDA+L +     KN+  + +  + ++K  G S  +S LV G  L+       M  R+ +
Sbjct  145  VVDAVLAIP----KNDGSFDLGNIGVVKILGGSLEDSELVDGVVLDKGPLHPDMPKRLEN  200

Query  125  AKIACLDMNLQKERMKLGVQITVDDPDQLEKIRERESGIVLERVEMILKSGANVIFTTKG  184
            AK+  L+ +L+ E+ +    + + D +QLE+  + E   +LE VE I+ SG NV+   KG
Sbjct  201  AKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKAEEEQILEIVEKIIDSGVNVVVCQKG  260

Query  185  IDDMVLKLFVERGAMAVRRCKKEDLRRIAKATGATLVSSLSDLNGDEKFDASNLGYAEEV  244
            IDD+ L    + G MA+RR KK DL R+AKATGA  VSSL DL  D+      LG A +V
Sbjct  261  IDDLALHFLAKNGIMALRRVKKRDLERLAKATGARAVSSLDDLTPDD------LGTAGKV  314

Query  245  VQERISDDECILVKGTKVHTSASIILRGPNDYSLDEMERSVHDSLCAVKRTLESGSIVPG  304
             +E+I D++   ++G K   +A+I+LRG  D+ LDE+ERS+HD+LC VK  +E   +VPG
Sbjct  315  EEEKIGDEKYTFIEGCKSPKAATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPG  374

Query  305  GGAVETALHIYLEEFAVTVGSREQLAIGEFAQSLLIVPKTLAVNAAKDSSELVAQLRSRH  364
            GGAVE  L   L E+A +V  +EQLAI  FA++L ++PKTLA NA  D  E++A+LR+ H
Sbjct  375  GGAVEMELARALREYAKSVSGKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAH  434

Query  365  WASQRIEESPANKDDKAIVKKKNYKNYGLDLTKGRVHDCIKAGVLEPSMGKVKQFKSAVE  424
                                    K+ G+D+  G + D  +AGV++P   K +  KSA E
Sbjct  435  --------------------ASGEKHAGIDVETGEIIDMKEAGVVDPLKVKRQALKSATE  474

Query  425  ACIAIMRIDTMIK  437
            A   I+RID +IK
Sbjct  475  AASTILRIDDIIK  487



Lambda      K        H        a         alpha
   0.316    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00013134

Length=1822
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425760 pfam00575, S1, S1 RNA binding domain. The S1 domain oc...  61.1    4e-12


>CDD:425760 pfam00575, S1, S1 RNA binding domain.  The S1 domain occurs in 
a wide range of RNA associated proteins. It is structurally 
similar to cold shock protein which binds nucleic acids. The 
S1 domain has an OB-fold structure.
Length=72

 Score = 61.1 bits (149),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 42/74 (57%), Gaps = 2/74 (3%)

Query  1317  LKVGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKI  1376
              + G  V G+V +V + GAF+ +     + G    SE++D  V+D   + + GD VK K+
Sbjct  1     PEKGDVVEGEVTRVTKGGAFVDLG--NGVEGFIPISELSDDHVEDPDEVIKVGDEVKVKV  58

Query  1377  IKIDRESGKISFSL  1390
             +K+D++  +I  S+
Sbjct  59    LKVDKDRRRIILSI  72



Lambda      K        H        a         alpha
   0.314    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2302871928


Query= TCONS_00018643

Length=1464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425760 pfam00575, S1, S1 RNA binding domain. The S1 domain oc...  60.4    7e-12


>CDD:425760 pfam00575, S1, S1 RNA binding domain.  The S1 domain occurs in 
a wide range of RNA associated proteins. It is structurally 
similar to cold shock protein which binds nucleic acids. The 
S1 domain has an OB-fold structure.
Length=72

 Score = 60.4 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 42/74 (57%), Gaps = 2/74 (3%)

Query  1159  LKVGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKI  1218
              + G  V G+V +V + GAF+ +     + G    SE++D  V+D   + + GD VK K+
Sbjct  1     PEKGDVVEGEVTRVTKGGAFVDLG--NGVEGFIPISELSDDHVEDPDEVIKVGDEVKVKV  58

Query  1219  IKIDRESGKISFSL  1232
             +K+D++  +I  S+
Sbjct  59    LKVDKDRRRIILSI  72



Lambda      K        H        a         alpha
   0.314    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1852253130


Query= TCONS_00013135

Length=1822
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425760 pfam00575, S1, S1 RNA binding domain. The S1 domain oc...  61.1    4e-12


>CDD:425760 pfam00575, S1, S1 RNA binding domain.  The S1 domain occurs in 
a wide range of RNA associated proteins. It is structurally 
similar to cold shock protein which binds nucleic acids. The 
S1 domain has an OB-fold structure.
Length=72

 Score = 61.1 bits (149),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 42/74 (57%), Gaps = 2/74 (3%)

Query  1317  LKVGQFVTGKVRKVEEFGAFIVIDRSANISGLCHRSEMADKRVDDARTLYEEGDLVKAKI  1376
              + G  V G+V +V + GAF+ +     + G    SE++D  V+D   + + GD VK K+
Sbjct  1     PEKGDVVEGEVTRVTKGGAFVDLG--NGVEGFIPISELSDDHVEDPDEVIKVGDEVKVKV  58

Query  1377  IKIDRESGKISFSL  1390
             +K+D++  +I  S+
Sbjct  59    LKVDKDRRRIILSI  72



Lambda      K        H        a         alpha
   0.314    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 2302871928


Query= TCONS_00013136

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465050 pfam16186, Arm_3, Atypical Arm repeat. This atypical A...  83.4    2e-21
CDD:425727 pfam00514, Arm, Armadillo/beta-catenin-like repeat. Ap...  56.7    9e-12


>CDD:465050 pfam16186, Arm_3, Atypical Arm repeat.  This atypical Arm repeat 
appears at the very C-terminus of eukaryotic proteins such 
as importin subunit alpha-2, as the last of the repeating 
units.
Length=49

 Score = 83.4 bits (207),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 34/51 (67%), Positives = 39/51 (76%), Gaps = 2/51 (4%)

Query  211  LFIEEAGGMEKIHDCQNNANEEIYMKAYNIIEKYFSDEEEAGGDIDELAPQ  261
            L IEEAGG++KI   QN+ NEEIY KAY IIEKYFSDEEE   D + LAP+
Sbjct  1    LLIEEAGGLDKIEALQNHENEEIYKKAYKIIEKYFSDEEEE--DDENLAPE  49


>CDD:425727 pfam00514, Arm, Armadillo/beta-catenin-like repeat.  Approx. 
40 amino acid repeat. Tandem repeats form super-helix of helices 
that is proposed to mediate interaction of beta-catenin 
with its ligands. CAUTION: This family does not contain all 
known armadillo repeats.
Length=41

 Score = 56.7 bits (138),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 29/41 (71%), Gaps = 0/41 (0%)

Query  105  NSSQIQSVIDAGIIPPLINLLANGDFKTRKEACWAISNATS  145
            +    Q+VI+AG +PPL+ LL++ D + ++EA WA+SN  +
Sbjct  1    SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA  41



Lambda      K        H        a         alpha
   0.316    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00013137

Length=487


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00018646

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465050 pfam16186, Arm_3, Atypical Arm repeat. This atypical A...  83.4    2e-21
CDD:425727 pfam00514, Arm, Armadillo/beta-catenin-like repeat. Ap...  56.7    9e-12


>CDD:465050 pfam16186, Arm_3, Atypical Arm repeat.  This atypical Arm repeat 
appears at the very C-terminus of eukaryotic proteins such 
as importin subunit alpha-2, as the last of the repeating 
units.
Length=49

 Score = 83.4 bits (207),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 34/51 (67%), Positives = 39/51 (76%), Gaps = 2/51 (4%)

Query  211  LFIEEAGGMEKIHDCQNNANEEIYMKAYNIIEKYFSDEEEAGGDIDELAPQ  261
            L IEEAGG++KI   QN+ NEEIY KAY IIEKYFSDEEE   D + LAP+
Sbjct  1    LLIEEAGGLDKIEALQNHENEEIYKKAYKIIEKYFSDEEEE--DDENLAPE  49


>CDD:425727 pfam00514, Arm, Armadillo/beta-catenin-like repeat.  Approx. 
40 amino acid repeat. Tandem repeats form super-helix of helices 
that is proposed to mediate interaction of beta-catenin 
with its ligands. CAUTION: This family does not contain all 
known armadillo repeats.
Length=41

 Score = 56.7 bits (138),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 29/41 (71%), Gaps = 0/41 (0%)

Query  105  NSSQIQSVIDAGIIPPLINLLANGDFKTRKEACWAISNATS  145
            +    Q+VI+AG +PPL+ LL++ D + ++EA WA+SN  +
Sbjct  1    SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA  41



Lambda      K        H        a         alpha
   0.316    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00013138

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465050 pfam16186, Arm_3, Atypical Arm repeat. This atypical A...  83.4    2e-21
CDD:425727 pfam00514, Arm, Armadillo/beta-catenin-like repeat. Ap...  56.7    9e-12


>CDD:465050 pfam16186, Arm_3, Atypical Arm repeat.  This atypical Arm repeat 
appears at the very C-terminus of eukaryotic proteins such 
as importin subunit alpha-2, as the last of the repeating 
units.
Length=49

 Score = 83.4 bits (207),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 34/51 (67%), Positives = 39/51 (76%), Gaps = 2/51 (4%)

Query  211  LFIEEAGGMEKIHDCQNNANEEIYMKAYNIIEKYFSDEEEAGGDIDELAPQ  261
            L IEEAGG++KI   QN+ NEEIY KAY IIEKYFSDEEE   D + LAP+
Sbjct  1    LLIEEAGGLDKIEALQNHENEEIYKKAYKIIEKYFSDEEEE--DDENLAPE  49


>CDD:425727 pfam00514, Arm, Armadillo/beta-catenin-like repeat.  Approx. 
40 amino acid repeat. Tandem repeats form super-helix of helices 
that is proposed to mediate interaction of beta-catenin 
with its ligands. CAUTION: This family does not contain all 
known armadillo repeats.
Length=41

 Score = 56.7 bits (138),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 29/41 (71%), Gaps = 0/41 (0%)

Query  105  NSSQIQSVIDAGIIPPLINLLANGDFKTRKEACWAISNATS  145
            +    Q+VI+AG +PPL+ LL++ D + ++EA WA+SN  +
Sbjct  1    SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA  41



Lambda      K        H        a         alpha
   0.316    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00013140

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435514 pfam16686, POT1PC, ssDNA-binding domain of telomere pr...  202     6e-63
CDD:397060 pfam02765, POT1, Telomeric single stranded DNA binding...  114     1e-30


>CDD:435514 pfam16686, POT1PC, ssDNA-binding domain of telomere protection 
protein.  POT1PC is the ssDNA-binding domain on a family of 
fungal telomere protection protein 1 proteins. POT1PC is able 
to accommodate heterogeneous ssDNA ligands. Pot1 proteins 
are the proteins responsible for binding to and protecting 
the 3' single-stranded DNA (ssDNA) overhang at most eukaryotic 
telomeres.
Length=152

 Score = 202 bits (517),  Expect = 6e-63, Method: Composition-based stats.
 Identities = 71/154 (46%), Positives = 94/154 (61%), Gaps = 2/154 (1%)

Query  187  IKDVEERTFVDLTGEVVKIFTNDSEKVALYLTDYTANEGLHNYTIDANNAREGDQFAYLS  246
            +KDV+   F DL  +VVK   +D  KV LY+ DYT N  L  Y    +    GD   +  
Sbjct  1    LKDVQPGQFFDLIVQVVKKAYDDGGKVLLYVWDYTENPPLFLYVSPEDGDFRGDDDDFKP  60

Query  247  HPKRQWQGPAGRMTLQITLWEPHASFAREHLKEGSFVRLRNVHIKRSRIEGSPLEGAMHC  306
                +W GP G++TLQITL++PHASFARE+LK G FVRLRNVHIK  R  G  LEG +H 
Sbjct  61   R-IGKWIGPFGKLTLQITLYDPHASFARENLKPGDFVRLRNVHIKYGR-NGLNLEGVLHG  118

Query  307  DRQNPDEMNIRLIDAKNDDRGRELLRRRKKYWES  340
            DR     + + +ID  ND R +EL RR+++Y ++
Sbjct  119  DRGYGRGIIVLVIDDNNDPRLKELKRRKREYEKT  152


>CDD:397060 pfam02765, POT1, Telomeric single stranded DNA binding POT1/CDC13. 
 This domain binds single stranded telomeric DNA and adopts 
an OB fold. It includes the proteins POT1 and CDC13 which 
have been shown to regulate telomere length, replication 
and capping. POT1 is one component of the shelterin complex 
that protects telomere-ends from attack by DNA-repair mechanisms.
Length=140

 Score = 114 bits (288),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 2/110 (2%)

Query  40   RSWCITFTLKDTDFGNGHVWDGLKIKYFKANQSQLPPV-RVHDVILLRNITITKFNGRPL  98
              +C TFT+ D     G   DGL++ +F+ N   LP V +V D+ILL  + I  FNG P 
Sbjct  32   SDYCCTFTIVDPSL-KGDSNDGLRVVFFRKNFEDLPIVKKVGDIILLHRVKIQSFNGEPQ  90

Query  99   GVAPDETTILWAIYRPEPGFVDISPICGPVPFEPSYSEKSYALSLIDKSS  148
            G+A    +  WA++  +   +   PI G   FE S  EK Y  SL   + 
Sbjct  91   GLANIGFSSSWALFNGKLNRLYTPPILGSNFFEFSAEEKKYLESLRKWAE  140



Lambda      K        H        a         alpha
   0.317    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 783080272


Query= TCONS_00013139

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435514 pfam16686, POT1PC, ssDNA-binding domain of telomere pr...  121     4e-34


>CDD:435514 pfam16686, POT1PC, ssDNA-binding domain of telomere protection 
protein.  POT1PC is the ssDNA-binding domain on a family of 
fungal telomere protection protein 1 proteins. POT1PC is able 
to accommodate heterogeneous ssDNA ligands. Pot1 proteins 
are the proteins responsible for binding to and protecting 
the 3' single-stranded DNA (ssDNA) overhang at most eukaryotic 
telomeres.
Length=152

 Score = 121 bits (306),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 45/82 (55%), Positives = 59/82 (72%), Gaps = 1/82 (1%)

Query  1    MTLQITLWEPHASFAREHLKEGSFVRLRNVHIKRSRIEGSPLEGAMHCDRQNPDEMNIRL  60
            +TLQITL++PHASFARE+LK G FVRLRNVHIK  R  G  LEG +H DR     + + +
Sbjct  72   LTLQITLYDPHASFARENLKPGDFVRLRNVHIKYGR-NGLNLEGVLHGDRGYGRGIIVLV  130

Query  61   IDAKNDDRGRELLRRRKKYWES  82
            ID  ND R +EL RR+++Y ++
Sbjct  131  IDDNNDPRLKELKRRKREYEKT  152



Lambda      K        H        a         alpha
   0.317    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00018647

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435514 pfam16686, POT1PC, ssDNA-binding domain of telomere pr...  202     2e-65
CDD:397060 pfam02765, POT1, Telomeric single stranded DNA binding...  113     6e-31


>CDD:435514 pfam16686, POT1PC, ssDNA-binding domain of telomere protection 
protein.  POT1PC is the ssDNA-binding domain on a family of 
fungal telomere protection protein 1 proteins. POT1PC is able 
to accommodate heterogeneous ssDNA ligands. Pot1 proteins 
are the proteins responsible for binding to and protecting 
the 3' single-stranded DNA (ssDNA) overhang at most eukaryotic 
telomeres.
Length=152

 Score = 202 bits (517),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 71/154 (46%), Positives = 94/154 (61%), Gaps = 2/154 (1%)

Query  187  IKDVEERTFVDLTGEVVKIFTNDSEKVALYLTDYTANEGLHNYTIDANNAREGDQFAYLS  246
            +KDV+   F DL  +VVK   +D  KV LY+ DYT N  L  Y    +    GD   +  
Sbjct  1    LKDVQPGQFFDLIVQVVKKAYDDGGKVLLYVWDYTENPPLFLYVSPEDGDFRGDDDDFKP  60

Query  247  HPKRQWQGPAGRMTLQITLWEPHASFAREHLKEGSFVRLRNVHIKRSRIEGSPLEGAMHC  306
                +W GP G++TLQITL++PHASFARE+LK G FVRLRNVHIK  R  G  LEG +H 
Sbjct  61   R-IGKWIGPFGKLTLQITLYDPHASFARENLKPGDFVRLRNVHIKYGR-NGLNLEGVLHG  118

Query  307  DRQNPDEMNIRLIDAKNDDRGRELLRRRKKYWES  340
            DR     + + +ID  ND R +EL RR+++Y ++
Sbjct  119  DRGYGRGIIVLVIDDNNDPRLKELKRRKREYEKT  152


>CDD:397060 pfam02765, POT1, Telomeric single stranded DNA binding POT1/CDC13. 
 This domain binds single stranded telomeric DNA and adopts 
an OB fold. It includes the proteins POT1 and CDC13 which 
have been shown to regulate telomere length, replication 
and capping. POT1 is one component of the shelterin complex 
that protects telomere-ends from attack by DNA-repair mechanisms.
Length=140

 Score = 113 bits (284),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 2/110 (2%)

Query  40   RSWCITFTLKDTDFGNGHVWDGLKIKYFKANQSQLPPV-RVHDVILLRNITITKFNGRPL  98
              +C TFT+ D     G   DGL++ +F+ N   LP V +V D+ILL  + I  FNG P 
Sbjct  32   SDYCCTFTIVDPSL-KGDSNDGLRVVFFRKNFEDLPIVKKVGDIILLHRVKIQSFNGEPQ  90

Query  99   GVAPDETTILWAIYRPEPGFVDISPICGPVPFEPSYSEKSYALSLIDKSS  148
            G+A    +  WA++  +   +   PI G   FE S  EK Y  SL   + 
Sbjct  91   GLANIGFSSSWALFNGKLNRLYTPPILGSNFFEFSAEEKKYLESLRKWAE  140



Lambda      K        H        a         alpha
   0.315    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00013141

Length=635
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435514 pfam16686, POT1PC, ssDNA-binding domain of telomere pr...  203     6e-63
CDD:397060 pfam02765, POT1, Telomeric single stranded DNA binding...  114     1e-30


>CDD:435514 pfam16686, POT1PC, ssDNA-binding domain of telomere protection 
protein.  POT1PC is the ssDNA-binding domain on a family of 
fungal telomere protection protein 1 proteins. POT1PC is able 
to accommodate heterogeneous ssDNA ligands. Pot1 proteins 
are the proteins responsible for binding to and protecting 
the 3' single-stranded DNA (ssDNA) overhang at most eukaryotic 
telomeres.
Length=152

 Score = 203 bits (518),  Expect = 6e-63, Method: Composition-based stats.
 Identities = 71/154 (46%), Positives = 94/154 (61%), Gaps = 2/154 (1%)

Query  187  IKDVEERTFVDLTGEVVKIFTNDSEKVALYLTDYTANEGLHNYTIDANNAREGDQFAYLS  246
            +KDV+   F DL  +VVK   +D  KV LY+ DYT N  L  Y    +    GD   +  
Sbjct  1    LKDVQPGQFFDLIVQVVKKAYDDGGKVLLYVWDYTENPPLFLYVSPEDGDFRGDDDDFKP  60

Query  247  HPKRQWQGPAGRMTLQITLWEPHASFAREHLKEGSFVRLRNVHIKRSRIEGSPLEGAMHC  306
                +W GP G++TLQITL++PHASFARE+LK G FVRLRNVHIK  R  G  LEG +H 
Sbjct  61   R-IGKWIGPFGKLTLQITLYDPHASFARENLKPGDFVRLRNVHIKYGR-NGLNLEGVLHG  118

Query  307  DRQNPDEMNIRLIDAKNDDRGRELLRRRKKYWES  340
            DR     + + +ID  ND R +EL RR+++Y ++
Sbjct  119  DRGYGRGIIVLVIDDNNDPRLKELKRRKREYEKT  152


>CDD:397060 pfam02765, POT1, Telomeric single stranded DNA binding POT1/CDC13. 
 This domain binds single stranded telomeric DNA and adopts 
an OB fold. It includes the proteins POT1 and CDC13 which 
have been shown to regulate telomere length, replication 
and capping. POT1 is one component of the shelterin complex 
that protects telomere-ends from attack by DNA-repair mechanisms.
Length=140

 Score = 114 bits (288),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 2/110 (2%)

Query  40   RSWCITFTLKDTDFGNGHVWDGLKIKYFKANQSQLPPV-RVHDVILLRNITITKFNGRPL  98
              +C TFT+ D     G   DGL++ +F+ N   LP V +V D+ILL  + I  FNG P 
Sbjct  32   SDYCCTFTIVDPSL-KGDSNDGLRVVFFRKNFEDLPIVKKVGDIILLHRVKIQSFNGEPQ  90

Query  99   GVAPDETTILWAIYRPEPGFVDISPICGPVPFEPSYSEKSYALSLIDKSS  148
            G+A    +  WA++  +   +   PI G   FE S  EK Y  SL   + 
Sbjct  91   GLANIGFSSSWALFNGKLNRLYTPPILGSNFFEFSAEEKKYLESLRKWAE  140



Lambda      K        H        a         alpha
   0.317    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 799336180


Query= TCONS_00013142

Length=635
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435514 pfam16686, POT1PC, ssDNA-binding domain of telomere pr...  203     6e-63
CDD:397060 pfam02765, POT1, Telomeric single stranded DNA binding...  114     1e-30


>CDD:435514 pfam16686, POT1PC, ssDNA-binding domain of telomere protection 
protein.  POT1PC is the ssDNA-binding domain on a family of 
fungal telomere protection protein 1 proteins. POT1PC is able 
to accommodate heterogeneous ssDNA ligands. Pot1 proteins 
are the proteins responsible for binding to and protecting 
the 3' single-stranded DNA (ssDNA) overhang at most eukaryotic 
telomeres.
Length=152

 Score = 203 bits (518),  Expect = 6e-63, Method: Composition-based stats.
 Identities = 71/154 (46%), Positives = 94/154 (61%), Gaps = 2/154 (1%)

Query  187  IKDVEERTFVDLTGEVVKIFTNDSEKVALYLTDYTANEGLHNYTIDANNAREGDQFAYLS  246
            +KDV+   F DL  +VVK   +D  KV LY+ DYT N  L  Y    +    GD   +  
Sbjct  1    LKDVQPGQFFDLIVQVVKKAYDDGGKVLLYVWDYTENPPLFLYVSPEDGDFRGDDDDFKP  60

Query  247  HPKRQWQGPAGRMTLQITLWEPHASFAREHLKEGSFVRLRNVHIKRSRIEGSPLEGAMHC  306
                +W GP G++TLQITL++PHASFARE+LK G FVRLRNVHIK  R  G  LEG +H 
Sbjct  61   R-IGKWIGPFGKLTLQITLYDPHASFARENLKPGDFVRLRNVHIKYGR-NGLNLEGVLHG  118

Query  307  DRQNPDEMNIRLIDAKNDDRGRELLRRRKKYWES  340
            DR     + + +ID  ND R +EL RR+++Y ++
Sbjct  119  DRGYGRGIIVLVIDDNNDPRLKELKRRKREYEKT  152


>CDD:397060 pfam02765, POT1, Telomeric single stranded DNA binding POT1/CDC13. 
 This domain binds single stranded telomeric DNA and adopts 
an OB fold. It includes the proteins POT1 and CDC13 which 
have been shown to regulate telomere length, replication 
and capping. POT1 is one component of the shelterin complex 
that protects telomere-ends from attack by DNA-repair mechanisms.
Length=140

 Score = 114 bits (288),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 2/110 (2%)

Query  40   RSWCITFTLKDTDFGNGHVWDGLKIKYFKANQSQLPPV-RVHDVILLRNITITKFNGRPL  98
              +C TFT+ D     G   DGL++ +F+ N   LP V +V D+ILL  + I  FNG P 
Sbjct  32   SDYCCTFTIVDPSL-KGDSNDGLRVVFFRKNFEDLPIVKKVGDIILLHRVKIQSFNGEPQ  90

Query  99   GVAPDETTILWAIYRPEPGFVDISPICGPVPFEPSYSEKSYALSLIDKSS  148
            G+A    +  WA++  +   +   PI G   FE S  EK Y  SL   + 
Sbjct  91   GLANIGFSSSWALFNGKLNRLYTPPILGSNFFEFSAEEKKYLESLRKWAE  140



Lambda      K        H        a         alpha
   0.317    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 799336180


Query= TCONS_00013143

Length=1344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  81.9    4e-19
CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharid...  71.5    1e-15
CDD:399058 pfam05773, RWD, RWD domain. This domain was identified...  68.9    2e-14
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  65.7    9e-13


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 81.9 bits (203),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 38/103 (37%), Positives = 59/103 (57%), Gaps = 16/103 (16%)

Query  1007  AIDFLHRVGALDHD-RLTALGRYLSMIPADLRCAKLMVYGSIFGCIDACVTISAILTVKS  1065
             A++ L+ +GALD D  LT LGR ++ +P D R AK+++  +  GC+D  +TI A L+V+ 
Sbjct  1     ALELLYYLGALDEDGELTPLGRKMAELPLDPRLAKMLLAAAELGCLDEVLTIVAALSVRD  60

Query  1066  PFISP-------------RDKRDEADAAKASFSKCD--GDLLT  1093
             PF+ P             R +R   + A+A F++ D  GD LT
Sbjct  61    PFVQPNFLDPRSAAKAARRRRRAADEKARAKFARLDLEGDHLT  103


>CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding 
(OB)-fold.  This family is found towards the C-terminus of 
the DEAD-box helicases (pfam00270). In these helicases it 
is apparently always found in association with pfam04408. There 
do seem to be a couple of instances where it occurs by itself. 
The structure Structure 3i4u adopts an OB-fold. helicases 
(pfam00270). In these helicases it is apparently always 
found in association with pfam04408. This C-terminal domain 
of the yeast helicase contains an oligonucleotide/oligosaccharide-binding 
(OB)-fold which seems to be placed at the entrance 
of the putative nucleic acid cavity. It also constitutes 
the binding site for the G-patch-containing domain of Pfa1p. 
When found on DEAH/RHA helicases, this domain is central 
to the regulation of the helicase activity through its binding 
of both RNA and G-patch domain proteins.
Length=82

 Score = 71.5 bits (176),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 20/102 (20%)

Query  1170  LRAIIAGAFQPQVAQISFPDKKFASSVTGTVEIDPDARTIKYFNQENGRVFIHPSSLLFS  1229
             LRA +A    P VA+                  DP  +       +N RVFIHPSS+LF+
Sbjct  1     LRAALAAGLYPNVARR-----------------DPKGKGYT-TLSDNQRVFIHPSSVLFN  42

Query  1230  AQSYSGAAAYLSYFTKMATSKVFIRDLTPFNPYSLLLFCGSI  1271
              +++     ++ Y   + T+KV+IR +T  +P  LLLF   I
Sbjct  43    EKTF--PPEWVVYQELVETTKVYIRTVTAISPEWLLLFAPHI  82


>CDD:399058 pfam05773, RWD, RWD domain.  This domain was identified in WD40 
repeat proteins and Ring finger domain proteins. The function 
of this domain is unknown. GCN2 is the alpha-subunit of 
the only translation initiation factor (eIF2 alpha) kinase 
that appears in all eukaryotes. Its function requires an interaction 
with GCN1 via the domain at its N-terminus, which is 
termed the RWD domain after three major RWD-containing proteins: 
RING finger-containing proteins, WD-repeat-containing 
proteins, and yeast DEAD (DEXD)-like helicases. The structure 
forms an alpha + beta sandwich fold consisting of two layers: 
a four-stranded antiparallel beta-sheet, and three side-by-side 
alpha-helices.
Length=111

 Score = 68.9 bits (169),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 28/113 (25%), Positives = 52/113 (46%), Gaps = 14/113 (12%)

Query  389  DSWVEEQDTLEAIFGERYKRLSSKV-------CEIKSEAPNIPG----SLSFRFQKPSAG  437
            +   EE + LE+I+ + ++ +S           ++  ++          L  +F  P   
Sbjct  1    EEQEEELEALESIYPDEFEVISDSPYESLEIEIKLSLDSDESDSSHLPPLVLKFTLPE-D  59

Query  438  YPSSVPVIAIQGT-GIPAYIRLSAIRQAVQFAEENFLGESMIFNIMDWLETHL  489
            YP   P I++     +     LS + +  + AEEN LGE MIF +++WL+ +L
Sbjct  60   YPDEPPKISLSSPWNLSDEQVLSLLEELEELAEEN-LGEVMIFELIEWLQENL  111


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 65.7 bits (161),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 46/177 (26%), Positives = 76/177 (43%), Gaps = 22/177 (12%)

Query  569  WKIQDAIIQAVNTHQVTIISGETGSGKSTQSVQFILDDMIKRGLGGVANIICTQPRRISA  628
              IQ   I A+   +  ++   TGSGK+   +   L+ + K   G  A ++   P R  A
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLA--PTRELA  58

Query  629  LGLADRVSDERCTSVGKEVGYIIRGDSRM----RPGETKITFVTTGVLLRRLQSGSGPDG  684
              + + +  +    +G +V  ++ GDSR     +     I   T G LL  LQ       
Sbjct  59   EQIYEELK-KLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE------  111

Query  685  NVAGSLADVTHVVVDEVHERSLDTDF---LLALLRDVLPYRPDIKVILMSATLDAEI  738
                 L ++  +V+DE H R LD  F   L  +LR +       +++L+SATL   +
Sbjct  112  --RKLLKNLKLLVLDEAH-RLLDMGFGPDLEEILRRL---PKKRQILLLSATLPRNL  162



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1715243600


Query= TCONS_00013144

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00018649

Length=1288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  81.9    5e-19
CDD:399058 pfam05773, RWD, RWD domain. This domain was identified...  68.5    2e-14
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  65.3    1e-12
CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharid...  58.0    6e-11


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 81.9 bits (203),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 38/103 (37%), Positives = 59/103 (57%), Gaps = 16/103 (16%)

Query  927   AIDFLHRVGALDHD-RLTALGRYLSMIPADLRCAKLMVYGSIFGCIDACVTISAILTVKS  985
             A++ L+ +GALD D  LT LGR ++ +P D R AK+++  +  GC+D  +TI A L+V+ 
Sbjct  1     ALELLYYLGALDEDGELTPLGRKMAELPLDPRLAKMLLAAAELGCLDEVLTIVAALSVRD  60

Query  986   PFISP-------------RDKRDEADAAKASFSKCD--GDLLT  1013
             PF+ P             R +R   + A+A F++ D  GD LT
Sbjct  61    PFVQPNFLDPRSAAKAARRRRRAADEKARAKFARLDLEGDHLT  103


>CDD:399058 pfam05773, RWD, RWD domain.  This domain was identified in WD40 
repeat proteins and Ring finger domain proteins. The function 
of this domain is unknown. GCN2 is the alpha-subunit of 
the only translation initiation factor (eIF2 alpha) kinase 
that appears in all eukaryotes. Its function requires an interaction 
with GCN1 via the domain at its N-terminus, which is 
termed the RWD domain after three major RWD-containing proteins: 
RING finger-containing proteins, WD-repeat-containing 
proteins, and yeast DEAD (DEXD)-like helicases. The structure 
forms an alpha + beta sandwich fold consisting of two layers: 
a four-stranded antiparallel beta-sheet, and three side-by-side 
alpha-helices.
Length=111

 Score = 68.5 bits (168),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 28/113 (25%), Positives = 52/113 (46%), Gaps = 14/113 (12%)

Query  309  DSWVEEQDTLEAIFGERYKRLSSKV-------CEIKSEAPNIPG----SLSFRFQKPSAG  357
            +   EE + LE+I+ + ++ +S           ++  ++          L  +F  P   
Sbjct  1    EEQEEELEALESIYPDEFEVISDSPYESLEIEIKLSLDSDESDSSHLPPLVLKFTLPE-D  59

Query  358  YPSSVPVIAIQGT-GIPAYIRLSAIRQAVQFAEENFLGESMIFNIMDWLETHL  409
            YP   P I++     +     LS + +  + AEEN LGE MIF +++WL+ +L
Sbjct  60   YPDEPPKISLSSPWNLSDEQVLSLLEELEELAEEN-LGEVMIFELIEWLQENL  111


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 65.3 bits (160),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 46/177 (26%), Positives = 76/177 (43%), Gaps = 22/177 (12%)

Query  489  WKIQDAIIQAVNTHQVTIISGETGSGKSTQSVQFILDDMIKRGLGGVANIICTQPRRISA  548
              IQ   I A+   +  ++   TGSGK+   +   L+ + K   G  A ++   P R  A
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLA--PTRELA  58

Query  549  LGLADRVSDERCTSVGKEVGYIIRGDSRM----RPGETKITFVTTGVLLRRLQSGSGPDG  604
              + + +  +    +G +V  ++ GDSR     +     I   T G LL  LQ       
Sbjct  59   EQIYEELK-KLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE------  111

Query  605  NVAGSLADVTHVVVDEVHERSLDTDF---LLALLRDVLPYRPDIKVILMSATLDAEI  658
                 L ++  +V+DE H R LD  F   L  +LR +       +++L+SATL   +
Sbjct  112  --RKLLKNLKLLVLDEAH-RLLDMGFGPDLEEILRRL---PKKRQILLLSATLPRNL  162


>CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding 
(OB)-fold.  This family is found towards the C-terminus of 
the DEAD-box helicases (pfam00270). In these helicases it 
is apparently always found in association with pfam04408. There 
do seem to be a couple of instances where it occurs by itself. 
The structure Structure 3i4u adopts an OB-fold. helicases 
(pfam00270). In these helicases it is apparently always 
found in association with pfam04408. This C-terminal domain 
of the yeast helicase contains an oligonucleotide/oligosaccharide-binding 
(OB)-fold which seems to be placed at the entrance 
of the putative nucleic acid cavity. It also constitutes 
the binding site for the G-patch-containing domain of Pfa1p. 
When found on DEAH/RHA helicases, this domain is central 
to the regulation of the helicase activity through its binding 
of both RNA and G-patch domain proteins.
Length=82

 Score = 58.0 bits (141),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 34/126 (27%), Positives = 50/126 (40%), Gaps = 44/126 (35%)

Query  1090  LRAIIAGAFQPQVAQISFPDKKFASSVTGTVEIDPDARTIKYFNQENGRVFIHPSSLLFS  1149
             LRA +A    P VA+                  DP  +       +N RVFIHPSS+LF+
Sbjct  1     LRAALAAGLYPNVARR-----------------DPKGKGYT-TLSDNQRVFIHPSSVLFN  42

Query  1150  AQSYSGAAAYLSYFTKMATSKVFIRDLTRMHSHPHPHSKQPPIIEAILIACPAFNPYSLL  1209
              +++     ++ Y   + T+KV+IR +T                        A +P  LL
Sbjct  43    EKTF--PPEWVVYQELVETTKVYIRTVT------------------------AISPEWLL  76

Query  1210  LFCGSI  1215
             LF   I
Sbjct  77    LFAPHI  82



Lambda      K        H        a         alpha
   0.318    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1638154000


Query= TCONS_00018650

Length=1344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  81.9    4e-19
CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharid...  71.5    1e-15
CDD:399058 pfam05773, RWD, RWD domain. This domain was identified...  68.9    2e-14
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  65.7    9e-13


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 81.9 bits (203),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 38/103 (37%), Positives = 59/103 (57%), Gaps = 16/103 (16%)

Query  1007  AIDFLHRVGALDHD-RLTALGRYLSMIPADLRCAKLMVYGSIFGCIDACVTISAILTVKS  1065
             A++ L+ +GALD D  LT LGR ++ +P D R AK+++  +  GC+D  +TI A L+V+ 
Sbjct  1     ALELLYYLGALDEDGELTPLGRKMAELPLDPRLAKMLLAAAELGCLDEVLTIVAALSVRD  60

Query  1066  PFISP-------------RDKRDEADAAKASFSKCD--GDLLT  1093
             PF+ P             R +R   + A+A F++ D  GD LT
Sbjct  61    PFVQPNFLDPRSAAKAARRRRRAADEKARAKFARLDLEGDHLT  103


>CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding 
(OB)-fold.  This family is found towards the C-terminus of 
the DEAD-box helicases (pfam00270). In these helicases it 
is apparently always found in association with pfam04408. There 
do seem to be a couple of instances where it occurs by itself. 
The structure Structure 3i4u adopts an OB-fold. helicases 
(pfam00270). In these helicases it is apparently always 
found in association with pfam04408. This C-terminal domain 
of the yeast helicase contains an oligonucleotide/oligosaccharide-binding 
(OB)-fold which seems to be placed at the entrance 
of the putative nucleic acid cavity. It also constitutes 
the binding site for the G-patch-containing domain of Pfa1p. 
When found on DEAH/RHA helicases, this domain is central 
to the regulation of the helicase activity through its binding 
of both RNA and G-patch domain proteins.
Length=82

 Score = 71.5 bits (176),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 20/102 (20%)

Query  1170  LRAIIAGAFQPQVAQISFPDKKFASSVTGTVEIDPDARTIKYFNQENGRVFIHPSSLLFS  1229
             LRA +A    P VA+                  DP  +       +N RVFIHPSS+LF+
Sbjct  1     LRAALAAGLYPNVARR-----------------DPKGKGYT-TLSDNQRVFIHPSSVLFN  42

Query  1230  AQSYSGAAAYLSYFTKMATSKVFIRDLTPFNPYSLLLFCGSI  1271
              +++     ++ Y   + T+KV+IR +T  +P  LLLF   I
Sbjct  43    EKTF--PPEWVVYQELVETTKVYIRTVTAISPEWLLLFAPHI  82


>CDD:399058 pfam05773, RWD, RWD domain.  This domain was identified in WD40 
repeat proteins and Ring finger domain proteins. The function 
of this domain is unknown. GCN2 is the alpha-subunit of 
the only translation initiation factor (eIF2 alpha) kinase 
that appears in all eukaryotes. Its function requires an interaction 
with GCN1 via the domain at its N-terminus, which is 
termed the RWD domain after three major RWD-containing proteins: 
RING finger-containing proteins, WD-repeat-containing 
proteins, and yeast DEAD (DEXD)-like helicases. The structure 
forms an alpha + beta sandwich fold consisting of two layers: 
a four-stranded antiparallel beta-sheet, and three side-by-side 
alpha-helices.
Length=111

 Score = 68.9 bits (169),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 28/113 (25%), Positives = 52/113 (46%), Gaps = 14/113 (12%)

Query  389  DSWVEEQDTLEAIFGERYKRLSSKV-------CEIKSEAPNIPG----SLSFRFQKPSAG  437
            +   EE + LE+I+ + ++ +S           ++  ++          L  +F  P   
Sbjct  1    EEQEEELEALESIYPDEFEVISDSPYESLEIEIKLSLDSDESDSSHLPPLVLKFTLPE-D  59

Query  438  YPSSVPVIAIQGT-GIPAYIRLSAIRQAVQFAEENFLGESMIFNIMDWLETHL  489
            YP   P I++     +     LS + +  + AEEN LGE MIF +++WL+ +L
Sbjct  60   YPDEPPKISLSSPWNLSDEQVLSLLEELEELAEEN-LGEVMIFELIEWLQENL  111


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 65.7 bits (161),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 46/177 (26%), Positives = 76/177 (43%), Gaps = 22/177 (12%)

Query  569  WKIQDAIIQAVNTHQVTIISGETGSGKSTQSVQFILDDMIKRGLGGVANIICTQPRRISA  628
              IQ   I A+   +  ++   TGSGK+   +   L+ + K   G  A ++   P R  A
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLA--PTRELA  58

Query  629  LGLADRVSDERCTSVGKEVGYIIRGDSRM----RPGETKITFVTTGVLLRRLQSGSGPDG  684
              + + +  +    +G +V  ++ GDSR     +     I   T G LL  LQ       
Sbjct  59   EQIYEELK-KLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE------  111

Query  685  NVAGSLADVTHVVVDEVHERSLDTDF---LLALLRDVLPYRPDIKVILMSATLDAEI  738
                 L ++  +V+DE H R LD  F   L  +LR +       +++L+SATL   +
Sbjct  112  --RKLLKNLKLLVLDEAH-RLLDMGFGPDLEEILRRL---PKKRQILLLSATLPRNL  162



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1715243600


Query= TCONS_00013145

Length=1344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  81.9    4e-19
CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharid...  71.5    1e-15
CDD:399058 pfam05773, RWD, RWD domain. This domain was identified...  68.9    2e-14
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  65.7    9e-13


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 81.9 bits (203),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 38/103 (37%), Positives = 59/103 (57%), Gaps = 16/103 (16%)

Query  1007  AIDFLHRVGALDHD-RLTALGRYLSMIPADLRCAKLMVYGSIFGCIDACVTISAILTVKS  1065
             A++ L+ +GALD D  LT LGR ++ +P D R AK+++  +  GC+D  +TI A L+V+ 
Sbjct  1     ALELLYYLGALDEDGELTPLGRKMAELPLDPRLAKMLLAAAELGCLDEVLTIVAALSVRD  60

Query  1066  PFISP-------------RDKRDEADAAKASFSKCD--GDLLT  1093
             PF+ P             R +R   + A+A F++ D  GD LT
Sbjct  61    PFVQPNFLDPRSAAKAARRRRRAADEKARAKFARLDLEGDHLT  103


>CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding 
(OB)-fold.  This family is found towards the C-terminus of 
the DEAD-box helicases (pfam00270). In these helicases it 
is apparently always found in association with pfam04408. There 
do seem to be a couple of instances where it occurs by itself. 
The structure Structure 3i4u adopts an OB-fold. helicases 
(pfam00270). In these helicases it is apparently always 
found in association with pfam04408. This C-terminal domain 
of the yeast helicase contains an oligonucleotide/oligosaccharide-binding 
(OB)-fold which seems to be placed at the entrance 
of the putative nucleic acid cavity. It also constitutes 
the binding site for the G-patch-containing domain of Pfa1p. 
When found on DEAH/RHA helicases, this domain is central 
to the regulation of the helicase activity through its binding 
of both RNA and G-patch domain proteins.
Length=82

 Score = 71.5 bits (176),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 20/102 (20%)

Query  1170  LRAIIAGAFQPQVAQISFPDKKFASSVTGTVEIDPDARTIKYFNQENGRVFIHPSSLLFS  1229
             LRA +A    P VA+                  DP  +       +N RVFIHPSS+LF+
Sbjct  1     LRAALAAGLYPNVARR-----------------DPKGKGYT-TLSDNQRVFIHPSSVLFN  42

Query  1230  AQSYSGAAAYLSYFTKMATSKVFIRDLTPFNPYSLLLFCGSI  1271
              +++     ++ Y   + T+KV+IR +T  +P  LLLF   I
Sbjct  43    EKTF--PPEWVVYQELVETTKVYIRTVTAISPEWLLLFAPHI  82


>CDD:399058 pfam05773, RWD, RWD domain.  This domain was identified in WD40 
repeat proteins and Ring finger domain proteins. The function 
of this domain is unknown. GCN2 is the alpha-subunit of 
the only translation initiation factor (eIF2 alpha) kinase 
that appears in all eukaryotes. Its function requires an interaction 
with GCN1 via the domain at its N-terminus, which is 
termed the RWD domain after three major RWD-containing proteins: 
RING finger-containing proteins, WD-repeat-containing 
proteins, and yeast DEAD (DEXD)-like helicases. The structure 
forms an alpha + beta sandwich fold consisting of two layers: 
a four-stranded antiparallel beta-sheet, and three side-by-side 
alpha-helices.
Length=111

 Score = 68.9 bits (169),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 28/113 (25%), Positives = 52/113 (46%), Gaps = 14/113 (12%)

Query  389  DSWVEEQDTLEAIFGERYKRLSSKV-------CEIKSEAPNIPG----SLSFRFQKPSAG  437
            +   EE + LE+I+ + ++ +S           ++  ++          L  +F  P   
Sbjct  1    EEQEEELEALESIYPDEFEVISDSPYESLEIEIKLSLDSDESDSSHLPPLVLKFTLPE-D  59

Query  438  YPSSVPVIAIQGT-GIPAYIRLSAIRQAVQFAEENFLGESMIFNIMDWLETHL  489
            YP   P I++     +     LS + +  + AEEN LGE MIF +++WL+ +L
Sbjct  60   YPDEPPKISLSSPWNLSDEQVLSLLEELEELAEEN-LGEVMIFELIEWLQENL  111


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 65.7 bits (161),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 46/177 (26%), Positives = 76/177 (43%), Gaps = 22/177 (12%)

Query  569  WKIQDAIIQAVNTHQVTIISGETGSGKSTQSVQFILDDMIKRGLGGVANIICTQPRRISA  628
              IQ   I A+   +  ++   TGSGK+   +   L+ + K   G  A ++   P R  A
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLA--PTRELA  58

Query  629  LGLADRVSDERCTSVGKEVGYIIRGDSRM----RPGETKITFVTTGVLLRRLQSGSGPDG  684
              + + +  +    +G +V  ++ GDSR     +     I   T G LL  LQ       
Sbjct  59   EQIYEELK-KLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE------  111

Query  685  NVAGSLADVTHVVVDEVHERSLDTDF---LLALLRDVLPYRPDIKVILMSATLDAEI  738
                 L ++  +V+DE H R LD  F   L  +LR +       +++L+SATL   +
Sbjct  112  --RKLLKNLKLLVLDEAH-RLLDMGFGPDLEEILRRL---PKKRQILLLSATLPRNL  162



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1715243600


Query= TCONS_00013146

Length=1344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  81.9    4e-19
CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharid...  71.5    1e-15
CDD:399058 pfam05773, RWD, RWD domain. This domain was identified...  68.9    2e-14
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  65.7    9e-13


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 81.9 bits (203),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 38/103 (37%), Positives = 59/103 (57%), Gaps = 16/103 (16%)

Query  1007  AIDFLHRVGALDHD-RLTALGRYLSMIPADLRCAKLMVYGSIFGCIDACVTISAILTVKS  1065
             A++ L+ +GALD D  LT LGR ++ +P D R AK+++  +  GC+D  +TI A L+V+ 
Sbjct  1     ALELLYYLGALDEDGELTPLGRKMAELPLDPRLAKMLLAAAELGCLDEVLTIVAALSVRD  60

Query  1066  PFISP-------------RDKRDEADAAKASFSKCD--GDLLT  1093
             PF+ P             R +R   + A+A F++ D  GD LT
Sbjct  61    PFVQPNFLDPRSAAKAARRRRRAADEKARAKFARLDLEGDHLT  103


>CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding 
(OB)-fold.  This family is found towards the C-terminus of 
the DEAD-box helicases (pfam00270). In these helicases it 
is apparently always found in association with pfam04408. There 
do seem to be a couple of instances where it occurs by itself. 
The structure Structure 3i4u adopts an OB-fold. helicases 
(pfam00270). In these helicases it is apparently always 
found in association with pfam04408. This C-terminal domain 
of the yeast helicase contains an oligonucleotide/oligosaccharide-binding 
(OB)-fold which seems to be placed at the entrance 
of the putative nucleic acid cavity. It also constitutes 
the binding site for the G-patch-containing domain of Pfa1p. 
When found on DEAH/RHA helicases, this domain is central 
to the regulation of the helicase activity through its binding 
of both RNA and G-patch domain proteins.
Length=82

 Score = 71.5 bits (176),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 20/102 (20%)

Query  1170  LRAIIAGAFQPQVAQISFPDKKFASSVTGTVEIDPDARTIKYFNQENGRVFIHPSSLLFS  1229
             LRA +A    P VA+                  DP  +       +N RVFIHPSS+LF+
Sbjct  1     LRAALAAGLYPNVARR-----------------DPKGKGYT-TLSDNQRVFIHPSSVLFN  42

Query  1230  AQSYSGAAAYLSYFTKMATSKVFIRDLTPFNPYSLLLFCGSI  1271
              +++     ++ Y   + T+KV+IR +T  +P  LLLF   I
Sbjct  43    EKTF--PPEWVVYQELVETTKVYIRTVTAISPEWLLLFAPHI  82


>CDD:399058 pfam05773, RWD, RWD domain.  This domain was identified in WD40 
repeat proteins and Ring finger domain proteins. The function 
of this domain is unknown. GCN2 is the alpha-subunit of 
the only translation initiation factor (eIF2 alpha) kinase 
that appears in all eukaryotes. Its function requires an interaction 
with GCN1 via the domain at its N-terminus, which is 
termed the RWD domain after three major RWD-containing proteins: 
RING finger-containing proteins, WD-repeat-containing 
proteins, and yeast DEAD (DEXD)-like helicases. The structure 
forms an alpha + beta sandwich fold consisting of two layers: 
a four-stranded antiparallel beta-sheet, and three side-by-side 
alpha-helices.
Length=111

 Score = 68.9 bits (169),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 28/113 (25%), Positives = 52/113 (46%), Gaps = 14/113 (12%)

Query  389  DSWVEEQDTLEAIFGERYKRLSSKV-------CEIKSEAPNIPG----SLSFRFQKPSAG  437
            +   EE + LE+I+ + ++ +S           ++  ++          L  +F  P   
Sbjct  1    EEQEEELEALESIYPDEFEVISDSPYESLEIEIKLSLDSDESDSSHLPPLVLKFTLPE-D  59

Query  438  YPSSVPVIAIQGT-GIPAYIRLSAIRQAVQFAEENFLGESMIFNIMDWLETHL  489
            YP   P I++     +     LS + +  + AEEN LGE MIF +++WL+ +L
Sbjct  60   YPDEPPKISLSSPWNLSDEQVLSLLEELEELAEEN-LGEVMIFELIEWLQENL  111


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 65.7 bits (161),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 46/177 (26%), Positives = 76/177 (43%), Gaps = 22/177 (12%)

Query  569  WKIQDAIIQAVNTHQVTIISGETGSGKSTQSVQFILDDMIKRGLGGVANIICTQPRRISA  628
              IQ   I A+   +  ++   TGSGK+   +   L+ + K   G  A ++   P R  A
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLA--PTRELA  58

Query  629  LGLADRVSDERCTSVGKEVGYIIRGDSRM----RPGETKITFVTTGVLLRRLQSGSGPDG  684
              + + +  +    +G +V  ++ GDSR     +     I   T G LL  LQ       
Sbjct  59   EQIYEELK-KLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE------  111

Query  685  NVAGSLADVTHVVVDEVHERSLDTDF---LLALLRDVLPYRPDIKVILMSATLDAEI  738
                 L ++  +V+DE H R LD  F   L  +LR +       +++L+SATL   +
Sbjct  112  --RKLLKNLKLLVLDEAH-RLLDMGFGPDLEEILRRL---PKKRQILLLSATLPRNL  162



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0712    0.140     1.90     42.6     43.6 

Effective search space used: 1715243600


Query= TCONS_00013147

Length=1368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461295 pfam04408, HA2, Helicase associated domain (HA2). This...  81.9    4e-19
CDD:399058 pfam05773, RWD, RWD domain. This domain was identified...  68.9    2e-14
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  65.7    1e-12
CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharid...  58.0    6e-11


>CDD:461295 pfam04408, HA2, Helicase associated domain (HA2).  This presumed 
domain is about 90 amino acid residues in length. It is 
found is a diverse set of RNA helicases. Its function is unknown, 
however it seems likely to be involved in nucleic acid 
binding.
Length=104

 Score = 81.9 bits (203),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 38/103 (37%), Positives = 59/103 (57%), Gaps = 16/103 (16%)

Query  1007  AIDFLHRVGALDHD-RLTALGRYLSMIPADLRCAKLMVYGSIFGCIDACVTISAILTVKS  1065
             A++ L+ +GALD D  LT LGR ++ +P D R AK+++  +  GC+D  +TI A L+V+ 
Sbjct  1     ALELLYYLGALDEDGELTPLGRKMAELPLDPRLAKMLLAAAELGCLDEVLTIVAALSVRD  60

Query  1066  PFISP-------------RDKRDEADAAKASFSKCD--GDLLT  1093
             PF+ P             R +R   + A+A F++ D  GD LT
Sbjct  61    PFVQPNFLDPRSAAKAARRRRRAADEKARAKFARLDLEGDHLT  103


>CDD:399058 pfam05773, RWD, RWD domain.  This domain was identified in WD40 
repeat proteins and Ring finger domain proteins. The function 
of this domain is unknown. GCN2 is the alpha-subunit of 
the only translation initiation factor (eIF2 alpha) kinase 
that appears in all eukaryotes. Its function requires an interaction 
with GCN1 via the domain at its N-terminus, which is 
termed the RWD domain after three major RWD-containing proteins: 
RING finger-containing proteins, WD-repeat-containing 
proteins, and yeast DEAD (DEXD)-like helicases. The structure 
forms an alpha + beta sandwich fold consisting of two layers: 
a four-stranded antiparallel beta-sheet, and three side-by-side 
alpha-helices.
Length=111

 Score = 68.9 bits (169),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 28/113 (25%), Positives = 52/113 (46%), Gaps = 14/113 (12%)

Query  389  DSWVEEQDTLEAIFGERYKRLSSKV-------CEIKSEAPNIPG----SLSFRFQKPSAG  437
            +   EE + LE+I+ + ++ +S           ++  ++          L  +F  P   
Sbjct  1    EEQEEELEALESIYPDEFEVISDSPYESLEIEIKLSLDSDESDSSHLPPLVLKFTLPE-D  59

Query  438  YPSSVPVIAIQGT-GIPAYIRLSAIRQAVQFAEENFLGESMIFNIMDWLETHL  489
            YP   P I++     +     LS + +  + AEEN LGE MIF +++WL+ +L
Sbjct  60   YPDEPPKISLSSPWNLSDEQVLSLLEELEELAEEN-LGEVMIFELIEWLQENL  111


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 65.7 bits (161),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 46/177 (26%), Positives = 76/177 (43%), Gaps = 22/177 (12%)

Query  569  WKIQDAIIQAVNTHQVTIISGETGSGKSTQSVQFILDDMIKRGLGGVANIICTQPRRISA  628
              IQ   I A+   +  ++   TGSGK+   +   L+ + K   G  A ++   P R  A
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLA--PTRELA  58

Query  629  LGLADRVSDERCTSVGKEVGYIIRGDSRM----RPGETKITFVTTGVLLRRLQSGSGPDG  684
              + + +  +    +G +V  ++ GDSR     +     I   T G LL  LQ       
Sbjct  59   EQIYEELK-KLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE------  111

Query  685  NVAGSLADVTHVVVDEVHERSLDTDF---LLALLRDVLPYRPDIKVILMSATLDAEI  738
                 L ++  +V+DE H R LD  F   L  +LR +       +++L+SATL   +
Sbjct  112  --RKLLKNLKLLVLDEAH-RLLDMGFGPDLEEILRRL---PKKRQILLLSATLPRNL  162


>CDD:400182 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding 
(OB)-fold.  This family is found towards the C-terminus of 
the DEAD-box helicases (pfam00270). In these helicases it 
is apparently always found in association with pfam04408. There 
do seem to be a couple of instances where it occurs by itself. 
The structure Structure 3i4u adopts an OB-fold. helicases 
(pfam00270). In these helicases it is apparently always 
found in association with pfam04408. This C-terminal domain 
of the yeast helicase contains an oligonucleotide/oligosaccharide-binding 
(OB)-fold which seems to be placed at the entrance 
of the putative nucleic acid cavity. It also constitutes 
the binding site for the G-patch-containing domain of Pfa1p. 
When found on DEAH/RHA helicases, this domain is central 
to the regulation of the helicase activity through its binding 
of both RNA and G-patch domain proteins.
Length=82

 Score = 58.0 bits (141),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 34/126 (27%), Positives = 50/126 (40%), Gaps = 44/126 (35%)

Query  1170  LRAIIAGAFQPQVAQISFPDKKFASSVTGTVEIDPDARTIKYFNQENGRVFIHPSSLLFS  1229
             LRA +A    P VA+                  DP  +       +N RVFIHPSS+LF+
Sbjct  1     LRAALAAGLYPNVARR-----------------DPKGKGYT-TLSDNQRVFIHPSSVLFN  42

Query  1230  AQSYSGAAAYLSYFTKMATSKVFIRDLTRMHSHPHPHSKQPPIIEAILIACPAFNPYSLL  1289
              +++     ++ Y   + T+KV+IR +T                        A +P  LL
Sbjct  43    EKTF--PPEWVVYQELVETTKVYIRTVT------------------------AISPEWLL  76

Query  1290  LFCGSI  1295
             LF   I
Sbjct  77    LFAPHI  82



Lambda      K        H        a         alpha
   0.318    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1748282000


Query= TCONS_00013148

Length=688


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 877500050


Query= TCONS_00018651

Length=688


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 877500050


Query= TCONS_00013150

Length=688


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 877500050


Query= TCONS_00018652

Length=268


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00013149

Length=688


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 877500050


Query= TCONS_00018653

Length=688


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 877500050


Query= TCONS_00018654

Length=688


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 877500050


Query= TCONS_00013151

Length=688


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 877500050


Query= TCONS_00013152

Length=606
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461558 pfam05132, RNA_pol_Rpc4, RNA polymerase III RPC4. Spec...  149     4e-43


>CDD:461558 pfam05132, RNA_pol_Rpc4, RNA polymerase III RPC4.  Specific subunit 
for Pol III, the tRNA specific polymerase.
Length=138

 Score = 149 bits (378),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 69/150 (46%), Gaps = 13/150 (9%)

Query  453  GQLFLMQFPPMTPNLIVPGTGGSTEEAATEETQAVPGATRSGEAAVKLESGELEILDGAD  512
            G+LFL QFPP+ P                E      G     E A + +           
Sbjct  2    GRLFLFQFPPVLPPFGDKSDDKPASVDEDEAKPEESGEKVEAEEAAEKK-------KKKK  54

Query  513  RTTSKQPSKILTAADWQLRAGRVGKLNVHKSGRVTMDWGGISFELDRATSVDFLQEALIV  572
             + S   S    +    L  G++GKL VHKSG+VT+DWGGI F++   T   FLQEA+ +
Sbjct  55   ESASDSSSPEKASTLKDLPEGKIGKLRVHKSGKVTLDWGGILFDVSPGTQCSFLQEAVAI  114

Query  573  SAPEEGIPEEENRVWAMGQLSGKFTVTPDW  602
                    E +   + +GQ++GKF VTPDW
Sbjct  115  D------EENKEEAYGLGQVNGKFVVTPDW  138



Lambda      K        H        a         alpha
   0.307    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 768135992


Query= TCONS_00018655

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00013153

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460582 pfam02537, CRCB, CrcB-like protein, Camphor Resistance...  91.4    5e-23


>CDD:460582 pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB). 
 CRCB is a family of bacterial integral membrane proteins 
with four TMs.. Over expression in E. coli also leads to camphor 
resistance.
Length=109

 Score = 91.4 bits (228),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 20/126 (16%)

Query  301  FAIVFAPLGCLLRYYLSVYLNPRVPAFPLGTFTVNIFGTIVLAMCFDLQRVDGVGTVIGA  360
               +   LG LLRY LS+        FPLGT  VN+ G+ +L +   L            
Sbjct  1    LVALGGALGALLRYLLSLLNPRLAGGFPLGTLAVNVLGSFLLGLLAGL----------LL  50

Query  361  DARSAPYAILTSCQVLQGVMDGFCGCATTVSTWVAELNGLSRRRQ---AYVYGVGSVAVA  417
            +   +P   L        +  GFCG  TT ST+  E   L R  Q   A +Y + SV + 
Sbjct  51   ERGHSPELRL-------LLGTGFCGGLTTFSTFSLETLTLLRAGQYLLALLYVLLSVVLG  103

Query  418  LGFFVV  423
            L   V+
Sbjct  104  LAAVVL  109



Lambda      K        H        a         alpha
   0.323    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00013154

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00013155

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00013156

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00018656

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.139    0.514    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00013157

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00018657

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin proteas...  123     1e-35
CDD:465710 pfam18323, CSN5_C, Cop9 signalosome subunit 5 C-termin...  120     1e-34


>CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease.  Members 
of this family are found in proteasome regulatory subunits, 
eukaryotic initiation factor 3 (eIF3) subunits and regulators 
of transcription factors. This family is also known as 
the MPN domain and PAD-1-like domain, JABP1 domain or JAMM 
domain. These are metalloenzymes that function as the ubiquitin 
isopeptidase/ deubiquitinase in the ubiquitin-based signalling 
and protein turnover pathways in eukaryotes. Versions 
of the domain in prokaryotic cognates of the ubiquitin-modification 
pathway are shown to have a similar role, and the 
archael protein from Haloferax volcanii is found to cleave ubiquitin-like 
small archaeal modifier proteins (SAMP1/2) from 
protein conjugates.
Length=117

 Score = 123 bits (312),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 64/113 (57%), Gaps = 4/113 (4%)

Query  59   HYFKSIRISAVALIKMTMHARSGGSL--EVMGLMQGYILPETFV-VTDAFRLPVEGTETR  115
               +++ I  + L+K+  HA  GG +  EVMG++ G +  +  + +T++F LP E TE  
Sbjct  1    SSVRTVIIHPLVLLKILDHANRGGKIGEEVMGVLLGKLEGDGTIEITNSFALPQEETEDD  60

Query  116  VNAQEEANEYMVSYLQSCRDAGRMENAVGWYHSHPGYGCWLSGIDVTTQDMQQ  168
            VNA     EYM +  +  +   R E  VGWYH+HPG  CWLS +DV T  + Q
Sbjct  61   VNAVALDQEYMENMHEMLKKVNRKEEVVGWYHTHPGL-CWLSSVDVHTHALYQ  112


>CDD:465710 pfam18323, CSN5_C, Cop9 signalosome subunit 5 C-terminal domain. 
 The COP9 (Constitutive photomorphogenesis 9) signalosome 
(CSN), a large multiprotein complex that resembles the 19S 
lid of the 26S proteasome, plays a central role in the regulation 
of the E3-cullin RING ubiquitin ligases (CRLs). The catalytic 
activity of the CSN complex is carried by subunit 5 
(CSN5), also known as c-Jun activation domain-binding protein-1 
(Jab1). This entry is the C-terminal domain found in CSN5 
proteins. CSN5, whose two C-terminal helices form an antiparallel 
hairpin, inserts its final C-terminal helix (helix 
II) into the central CSN6 framework at the core of the bundle. 
Deletion of the C-terminal helices has a pronounced effect 
on CSN integrity.
Length=81

 Score = 120 bits (303),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 38/80 (48%), Positives = 53/80 (66%), Gaps = 5/80 (6%)

Query  261  SQSPLFTTRDYGSRQMMDLSQKVRRAARGIESSGSRGGATTP-----KDQQLEKIVRDGQ  315
            SQSPL T RDYG++Q++DL++K+ +A   +  SG+ GG         +D QLEK+V+D  
Sbjct  1    SQSPLLTNRDYGTKQILDLAEKLEQAESSVSRSGAGGGGLGGGGKKKEDSQLEKVVKDSN  60

Query  316  RIVSEEVKGLLAAEVKMKLF  335
            +I  EEV GL+A  VK KLF
Sbjct  61   KIAIEEVHGLMAQVVKDKLF  80



Lambda      K        H        a         alpha
   0.315    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00013158

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin proteas...  123     1e-35
CDD:465710 pfam18323, CSN5_C, Cop9 signalosome subunit 5 C-termin...  120     1e-34


>CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease.  Members 
of this family are found in proteasome regulatory subunits, 
eukaryotic initiation factor 3 (eIF3) subunits and regulators 
of transcription factors. This family is also known as 
the MPN domain and PAD-1-like domain, JABP1 domain or JAMM 
domain. These are metalloenzymes that function as the ubiquitin 
isopeptidase/ deubiquitinase in the ubiquitin-based signalling 
and protein turnover pathways in eukaryotes. Versions 
of the domain in prokaryotic cognates of the ubiquitin-modification 
pathway are shown to have a similar role, and the 
archael protein from Haloferax volcanii is found to cleave ubiquitin-like 
small archaeal modifier proteins (SAMP1/2) from 
protein conjugates.
Length=117

 Score = 123 bits (312),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 64/113 (57%), Gaps = 4/113 (4%)

Query  59   HYFKSIRISAVALIKMTMHARSGGSL--EVMGLMQGYILPETFV-VTDAFRLPVEGTETR  115
               +++ I  + L+K+  HA  GG +  EVMG++ G +  +  + +T++F LP E TE  
Sbjct  1    SSVRTVIIHPLVLLKILDHANRGGKIGEEVMGVLLGKLEGDGTIEITNSFALPQEETEDD  60

Query  116  VNAQEEANEYMVSYLQSCRDAGRMENAVGWYHSHPGYGCWLSGIDVTTQDMQQ  168
            VNA     EYM +  +  +   R E  VGWYH+HPG  CWLS +DV T  + Q
Sbjct  61   VNAVALDQEYMENMHEMLKKVNRKEEVVGWYHTHPGL-CWLSSVDVHTHALYQ  112


>CDD:465710 pfam18323, CSN5_C, Cop9 signalosome subunit 5 C-terminal domain. 
 The COP9 (Constitutive photomorphogenesis 9) signalosome 
(CSN), a large multiprotein complex that resembles the 19S 
lid of the 26S proteasome, plays a central role in the regulation 
of the E3-cullin RING ubiquitin ligases (CRLs). The catalytic 
activity of the CSN complex is carried by subunit 5 
(CSN5), also known as c-Jun activation domain-binding protein-1 
(Jab1). This entry is the C-terminal domain found in CSN5 
proteins. CSN5, whose two C-terminal helices form an antiparallel 
hairpin, inserts its final C-terminal helix (helix 
II) into the central CSN6 framework at the core of the bundle. 
Deletion of the C-terminal helices has a pronounced effect 
on CSN integrity.
Length=81

 Score = 120 bits (303),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 38/80 (48%), Positives = 53/80 (66%), Gaps = 5/80 (6%)

Query  261  SQSPLFTTRDYGSRQMMDLSQKVRRAARGIESSGSRGGATTP-----KDQQLEKIVRDGQ  315
            SQSPL T RDYG++Q++DL++K+ +A   +  SG+ GG         +D QLEK+V+D  
Sbjct  1    SQSPLLTNRDYGTKQILDLAEKLEQAESSVSRSGAGGGGLGGGGKKKEDSQLEKVVKDSN  60

Query  316  RIVSEEVKGLLAAEVKMKLF  335
            +I  EEV GL+A  VK KLF
Sbjct  61   KIAIEEVHGLMAQVVKDKLF  80



Lambda      K        H        a         alpha
   0.315    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00013159

Length=1139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  224     3e-68
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  128     2e-35
CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  67.6    9e-15
CDD:434066 pfam14604, SH3_9, Variant SH3 domain                       61.5    1e-12


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 224 bits (574),  Expect = 3e-68, Method: Composition-based stats.
 Identities = 73/155 (47%), Positives = 106/155 (68%), Gaps = 3/155 (2%)

Query  984   EFARQLTIIESRLYSKIRPIECLNKTWQRKVGPDEPEPATNVKALILHSNQLTNWVAEMI  1043
             E ARQLT+IE  L+ KI+P E L   W +K   D+ E + N++A+I   N+L+NWVA  I
Sbjct  1     ELARQLTLIEFELFRKIKPRELLGSAWSKK---DKKENSPNIEAMIARFNKLSNWVASEI  57

Query  1044  LTQSDVKKRVVVIKHFVNVADRCRALNNYSTLTSIISALGTAPIHRLGRTWSQVSGRTSA  1103
             L++ D+KKR  VIK F+ +A+ CR LNN+++L +I+S L ++PI RL +TW  VS +   
Sbjct  58    LSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELVSKKYKK  117

Query  1104  ILEQMRRLMASTKNFGEYRETLHLANPPCIPFFGT  1138
              LE++ +LM+ ++NF  YRE L  A+PPCIPF G 
Sbjct  118   TLEELEKLMSPSRNFKNYREALSSASPPCIPFLGL  152


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 128 bits (324),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 53/108 (49%), Positives = 72/108 (67%), Gaps = 5/108 (5%)

Query  815  TLKCGTLAGLVEHLTRHDK-LDASFNNTFLLTYRSFTTASELFEMLAERFNIQPPFGLNP  873
             +K GTL  LVE+LT     LD SF +TFLLTYRSFTT +EL E+L ER+NI PP  L+ 
Sbjct  1    QVKAGTLEKLVEYLTSTRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSS  60

Query  874  DEMQMWIDRKQKPIRFRVVNILKSWFEHFWMEPNDEAHMNLLARVHAF  921
            D    WI +K  PIR RV+++L+ W E+++ + ND+    LL+R+  F
Sbjct  61   DS--YWISKKTLPIRIRVLSVLRHWVENYFSDFNDD--PVLLSRLEKF  104


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 67.6 bits (166),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 22/47 (47%), Positives = 27/47 (57%), Gaps = 0/47 (0%)

Query  88   RAMYDYDADDHTSLSFRRGDIIQVLNQLETGWWDGVINNSVRGWFPS  134
             A+YDY A +   LSF++GDII VL + E GWW G       G  PS
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKGGKEGLIPS  47


>CDD:434066 pfam14604, SH3_9, Variant SH3 domain.  
Length=49

 Score = 61.5 bits (150),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 22/48 (46%), Positives = 30/48 (63%), Gaps = 1/48 (2%)

Query  89   AMYDYDADDHTSLSFRRGDIIQVLNQLETGWWDGVINNSVRGWFPSNY  136
            A+Y Y+  D   LS +RGD+I V+ + E GWW+G IN    G  P+NY
Sbjct  1    ALYPYEPKDDDELSLQRGDVITVIEESEDGWWEG-INTGRTGLVPANY  47



Lambda      K        H        a         alpha
   0.316    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0941    0.140     1.90     42.6     43.6 

Effective search space used: 1454879996


Query= TCONS_00018658

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin proteas...  123     1e-35
CDD:465710 pfam18323, CSN5_C, Cop9 signalosome subunit 5 C-termin...  120     1e-34


>CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease.  Members 
of this family are found in proteasome regulatory subunits, 
eukaryotic initiation factor 3 (eIF3) subunits and regulators 
of transcription factors. This family is also known as 
the MPN domain and PAD-1-like domain, JABP1 domain or JAMM 
domain. These are metalloenzymes that function as the ubiquitin 
isopeptidase/ deubiquitinase in the ubiquitin-based signalling 
and protein turnover pathways in eukaryotes. Versions 
of the domain in prokaryotic cognates of the ubiquitin-modification 
pathway are shown to have a similar role, and the 
archael protein from Haloferax volcanii is found to cleave ubiquitin-like 
small archaeal modifier proteins (SAMP1/2) from 
protein conjugates.
Length=117

 Score = 123 bits (312),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 64/113 (57%), Gaps = 4/113 (4%)

Query  59   HYFKSIRISAVALIKMTMHARSGGSL--EVMGLMQGYILPETFV-VTDAFRLPVEGTETR  115
               +++ I  + L+K+  HA  GG +  EVMG++ G +  +  + +T++F LP E TE  
Sbjct  1    SSVRTVIIHPLVLLKILDHANRGGKIGEEVMGVLLGKLEGDGTIEITNSFALPQEETEDD  60

Query  116  VNAQEEANEYMVSYLQSCRDAGRMENAVGWYHSHPGYGCWLSGIDVTTQDMQQ  168
            VNA     EYM +  +  +   R E  VGWYH+HPG  CWLS +DV T  + Q
Sbjct  61   VNAVALDQEYMENMHEMLKKVNRKEEVVGWYHTHPGL-CWLSSVDVHTHALYQ  112


>CDD:465710 pfam18323, CSN5_C, Cop9 signalosome subunit 5 C-terminal domain. 
 The COP9 (Constitutive photomorphogenesis 9) signalosome 
(CSN), a large multiprotein complex that resembles the 19S 
lid of the 26S proteasome, plays a central role in the regulation 
of the E3-cullin RING ubiquitin ligases (CRLs). The catalytic 
activity of the CSN complex is carried by subunit 5 
(CSN5), also known as c-Jun activation domain-binding protein-1 
(Jab1). This entry is the C-terminal domain found in CSN5 
proteins. CSN5, whose two C-terminal helices form an antiparallel 
hairpin, inserts its final C-terminal helix (helix 
II) into the central CSN6 framework at the core of the bundle. 
Deletion of the C-terminal helices has a pronounced effect 
on CSN integrity.
Length=81

 Score = 120 bits (303),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 38/80 (48%), Positives = 53/80 (66%), Gaps = 5/80 (6%)

Query  261  SQSPLFTTRDYGSRQMMDLSQKVRRAARGIESSGSRGGATTP-----KDQQLEKIVRDGQ  315
            SQSPL T RDYG++Q++DL++K+ +A   +  SG+ GG         +D QLEK+V+D  
Sbjct  1    SQSPLLTNRDYGTKQILDLAEKLEQAESSVSRSGAGGGGLGGGGKKKEDSQLEKVVKDSN  60

Query  316  RIVSEEVKGLLAAEVKMKLF  335
            +I  EEV GL+A  VK KLF
Sbjct  61   KIAIEEVHGLMAQVVKDKLF  80



Lambda      K        H        a         alpha
   0.315    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00013160

Length=1151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  173     4e-50
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  128     2e-35
CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  67.6    9e-15
CDD:434066 pfam14604, SH3_9, Variant SH3 domain                       61.5    1e-12


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 173 bits (441),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 55/115 (48%), Positives = 80/115 (70%), Gaps = 3/115 (3%)

Query  984   EFARQLTIIESRLYSKIRPIECLNKTWQRKVGPDEPEPATNVKALILHSNQLTNWVAEMI  1043
             E ARQLT+IE  L+ KI+P E L   W +K   D+ E + N++A+I   N+L+NWVA  I
Sbjct  1     ELARQLTLIEFELFRKIKPRELLGSAWSKK---DKKENSPNIEAMIARFNKLSNWVASEI  57

Query  1044  LTQSDVKKRVVVIKHFVNVADRCRALNNYSTLTSIISALGTAPIHRLGRTWSQVS  1098
             L++ D+KKR  VIK F+ +A+ CR LNN+++L +I+S L ++PI RL +TW  VS
Sbjct  58    LSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELVS  112


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 128 bits (324),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 53/108 (49%), Positives = 72/108 (67%), Gaps = 5/108 (5%)

Query  815  TLKCGTLAGLVEHLTRHDK-LDASFNNTFLLTYRSFTTASELFEMLAERFNIQPPFGLNP  873
             +K GTL  LVE+LT     LD SF +TFLLTYRSFTT +EL E+L ER+NI PP  L+ 
Sbjct  1    QVKAGTLEKLVEYLTSTRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSS  60

Query  874  DEMQMWIDRKQKPIRFRVVNILKSWFEHFWMEPNDEAHMNLLARVHAF  921
            D    WI +K  PIR RV+++L+ W E+++ + ND+    LL+R+  F
Sbjct  61   DS--YWISKKTLPIRIRVLSVLRHWVENYFSDFNDD--PVLLSRLEKF  104


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 67.6 bits (166),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 22/47 (47%), Positives = 27/47 (57%), Gaps = 0/47 (0%)

Query  88   RAMYDYDADDHTSLSFRRGDIIQVLNQLETGWWDGVINNSVRGWFPS  134
             A+YDY A +   LSF++GDII VL + E GWW G       G  PS
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKGGKEGLIPS  47


>CDD:434066 pfam14604, SH3_9, Variant SH3 domain.  
Length=49

 Score = 61.5 bits (150),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 22/48 (46%), Positives = 30/48 (63%), Gaps = 1/48 (2%)

Query  89   AMYDYDADDHTSLSFRRGDIIQVLNQLETGWWDGVINNSVRGWFPSNY  136
            A+Y Y+  D   LS +RGD+I V+ + E GWW+G IN    G  P+NY
Sbjct  1    ALYPYEPKDDDELSLQRGDVITVIEESEDGWWEG-INTGRTGLVPANY  47



Lambda      K        H        a         alpha
   0.316    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1471634852


Query= TCONS_00018659

Length=1231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  241     5e-74
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  128     3e-35
CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  67.6    9e-15
CDD:434066 pfam14604, SH3_9, Variant SH3 domain                       61.5    2e-12


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 241 bits (618),  Expect = 5e-74, Method: Composition-based stats.
 Identities = 85/181 (47%), Positives = 114/181 (63%), Gaps = 23/181 (13%)

Query  984   EFARQLTIIESRLYSKIRPIECLNKTWQRKVGPDEPEPATNVKALILHSNQLTNWVAEMI  1043
             E ARQLT+IE  L+ KI+P E L   W +K   D+ E + N++A+I   N+L+NWVA  I
Sbjct  1     ELARQLTLIEFELFRKIKPRELLGSAWSKK---DKKENSPNIEAMIARFNKLSNWVASEI  57

Query  1044  LTQSDVKKRVVVIKHFVNVADRCRALNNYSTLTSIISALGTAPIHRLGRTW---------  1094
             L++ D+KKR  VIK F+ +A+ CR LNN+++L +I+S L ++PI RL +TW         
Sbjct  58    LSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELVSKKYKK  117

Query  1095  -----------SQNFGEYRETLHLANPPCIPFFGVYLTDLTFIEDGIPSLTPSELINFNK  1143
                        S+NF  YRE L  A+PPCIPF G+YLTDLTFIE+G P      LINF K
Sbjct  118   TLEELEKLMSPSRNFKNYREALSSASPPCIPFLGLYLTDLTFIEEGNPDFLEGGLINFEK  177

Query  1144  R  1144
             R
Sbjct  178   R  178


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 128 bits (323),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 53/108 (49%), Positives = 72/108 (67%), Gaps = 5/108 (5%)

Query  815  TLKCGTLAGLVEHLTRHDK-LDASFNNTFLLTYRSFTTASELFEMLAERFNIQPPFGLNP  873
             +K GTL  LVE+LT     LD SF +TFLLTYRSFTT +EL E+L ER+NI PP  L+ 
Sbjct  1    QVKAGTLEKLVEYLTSTRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSS  60

Query  874  DEMQMWIDRKQKPIRFRVVNILKSWFEHFWMEPNDEAHMNLLARVHAF  921
            D    WI +K  PIR RV+++L+ W E+++ + ND+    LL+R+  F
Sbjct  61   DS--YWISKKTLPIRIRVLSVLRHWVENYFSDFNDD--PVLLSRLEKF  104


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 67.6 bits (166),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 22/47 (47%), Positives = 27/47 (57%), Gaps = 0/47 (0%)

Query  88   RAMYDYDADDHTSLSFRRGDIIQVLNQLETGWWDGVINNSVRGWFPS  134
             A+YDY A +   LSF++GDII VL + E GWW G       G  PS
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKGGKEGLIPS  47


>CDD:434066 pfam14604, SH3_9, Variant SH3 domain.  
Length=49

 Score = 61.5 bits (150),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 22/48 (46%), Positives = 30/48 (63%), Gaps = 1/48 (2%)

Query  89   AMYDYDADDHTSLSFRRGDIIQVLNQLETGWWDGVINNSVRGWFPSNY  136
            A+Y Y+  D   LS +RGD+I V+ + E GWW+G IN    G  P+NY
Sbjct  1    ALYPYEPKDDDELSLQRGDVITVIEESEDGWWEG-INTGRTGLVPANY  47



Lambda      K        H        a         alpha
   0.316    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1583333892


Query= TCONS_00013161

Length=1251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  270     3e-84
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  128     3e-35
CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  67.6    9e-15
CDD:434066 pfam14604, SH3_9, Variant SH3 domain                       61.5    2e-12


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 270 bits (692),  Expect = 3e-84, Method: Composition-based stats.
 Identities = 90/181 (50%), Positives = 125/181 (69%), Gaps = 3/181 (2%)

Query  984   EFARQLTIIESRLYSKIRPIECLNKTWQRKVGPDEPEPATNVKALILHSNQLTNWVAEMI  1043
             E ARQLT+IE  L+ KI+P E L   W +K   D+ E + N++A+I   N+L+NWVA  I
Sbjct  1     ELARQLTLIEFELFRKIKPRELLGSAWSKK---DKKENSPNIEAMIARFNKLSNWVASEI  57

Query  1044  LTQSDVKKRVVVIKHFVNVADRCRALNNYSTLTSIISALGTAPIHRLGRTWSQVSGRTSA  1103
             L++ D+KKR  VIK F+ +A+ CR LNN+++L +I+S L ++PI RL +TW  VS +   
Sbjct  58    LSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELVSKKYKK  117

Query  1104  ILEQMRRLMASTKNFGEYRETLHLANPPCIPFFGVYLTDLTFIEDGIPSLTPSELINFNK  1163
              LE++ +LM+ ++NF  YRE L  A+PPCIPF G+YLTDLTFIE+G P      LINF K
Sbjct  118   TLEELEKLMSPSRNFKNYREALSSASPPCIPFLGLYLTDLTFIEEGNPDFLEGGLINFEK  177

Query  1164  R  1164
             R
Sbjct  178   R  178


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 128 bits (323),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 53/108 (49%), Positives = 72/108 (67%), Gaps = 5/108 (5%)

Query  815  TLKCGTLAGLVEHLTRHDK-LDASFNNTFLLTYRSFTTASELFEMLAERFNIQPPFGLNP  873
             +K GTL  LVE+LT     LD SF +TFLLTYRSFTT +EL E+L ER+NI PP  L+ 
Sbjct  1    QVKAGTLEKLVEYLTSTRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSS  60

Query  874  DEMQMWIDRKQKPIRFRVVNILKSWFEHFWMEPNDEAHMNLLARVHAF  921
            D    WI +K  PIR RV+++L+ W E+++ + ND+    LL+R+  F
Sbjct  61   DS--YWISKKTLPIRIRVLSVLRHWVENYFSDFNDD--PVLLSRLEKF  104


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 67.6 bits (166),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 22/47 (47%), Positives = 27/47 (57%), Gaps = 0/47 (0%)

Query  88   RAMYDYDADDHTSLSFRRGDIIQVLNQLETGWWDGVINNSVRGWFPS  134
             A+YDY A +   LSF++GDII VL + E GWW G       G  PS
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKGGKEGLIPS  47


>CDD:434066 pfam14604, SH3_9, Variant SH3 domain.  
Length=49

 Score = 61.5 bits (150),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 22/48 (46%), Positives = 30/48 (63%), Gaps = 1/48 (2%)

Query  89   AMYDYDADDHTSLSFRRGDIIQVLNQLETGWWDGVINNSVRGWFPSNY  136
            A+Y Y+  D   LS +RGD+I V+ + E GWW+G IN    G  P+NY
Sbjct  1    ALYPYEPKDDDELSLQRGDVITVIEESEDGWWEG-INTGRTGLVPANY  47



Lambda      K        H        a         alpha
   0.316    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1587219800


Query= TCONS_00018660

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin proteas...  123     1e-35
CDD:465710 pfam18323, CSN5_C, Cop9 signalosome subunit 5 C-termin...  120     1e-34


>CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease.  Members 
of this family are found in proteasome regulatory subunits, 
eukaryotic initiation factor 3 (eIF3) subunits and regulators 
of transcription factors. This family is also known as 
the MPN domain and PAD-1-like domain, JABP1 domain or JAMM 
domain. These are metalloenzymes that function as the ubiquitin 
isopeptidase/ deubiquitinase in the ubiquitin-based signalling 
and protein turnover pathways in eukaryotes. Versions 
of the domain in prokaryotic cognates of the ubiquitin-modification 
pathway are shown to have a similar role, and the 
archael protein from Haloferax volcanii is found to cleave ubiquitin-like 
small archaeal modifier proteins (SAMP1/2) from 
protein conjugates.
Length=117

 Score = 123 bits (312),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 64/113 (57%), Gaps = 4/113 (4%)

Query  59   HYFKSIRISAVALIKMTMHARSGGSL--EVMGLMQGYILPETFV-VTDAFRLPVEGTETR  115
               +++ I  + L+K+  HA  GG +  EVMG++ G +  +  + +T++F LP E TE  
Sbjct  1    SSVRTVIIHPLVLLKILDHANRGGKIGEEVMGVLLGKLEGDGTIEITNSFALPQEETEDD  60

Query  116  VNAQEEANEYMVSYLQSCRDAGRMENAVGWYHSHPGYGCWLSGIDVTTQDMQQ  168
            VNA     EYM +  +  +   R E  VGWYH+HPG  CWLS +DV T  + Q
Sbjct  61   VNAVALDQEYMENMHEMLKKVNRKEEVVGWYHTHPGL-CWLSSVDVHTHALYQ  112


>CDD:465710 pfam18323, CSN5_C, Cop9 signalosome subunit 5 C-terminal domain. 
 The COP9 (Constitutive photomorphogenesis 9) signalosome 
(CSN), a large multiprotein complex that resembles the 19S 
lid of the 26S proteasome, plays a central role in the regulation 
of the E3-cullin RING ubiquitin ligases (CRLs). The catalytic 
activity of the CSN complex is carried by subunit 5 
(CSN5), also known as c-Jun activation domain-binding protein-1 
(Jab1). This entry is the C-terminal domain found in CSN5 
proteins. CSN5, whose two C-terminal helices form an antiparallel 
hairpin, inserts its final C-terminal helix (helix 
II) into the central CSN6 framework at the core of the bundle. 
Deletion of the C-terminal helices has a pronounced effect 
on CSN integrity.
Length=81

 Score = 120 bits (303),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 38/80 (48%), Positives = 53/80 (66%), Gaps = 5/80 (6%)

Query  261  SQSPLFTTRDYGSRQMMDLSQKVRRAARGIESSGSRGGATTP-----KDQQLEKIVRDGQ  315
            SQSPL T RDYG++Q++DL++K+ +A   +  SG+ GG         +D QLEK+V+D  
Sbjct  1    SQSPLLTNRDYGTKQILDLAEKLEQAESSVSRSGAGGGGLGGGGKKKEDSQLEKVVKDSN  60

Query  316  RIVSEEVKGLLAAEVKMKLF  335
            +I  EEV GL+A  VK KLF
Sbjct  61   KIAIEEVHGLMAQVVKDKLF  80



Lambda      K        H        a         alpha
   0.315    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00013162

Length=707
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427641 pfam03999, MAP65_ASE1, Microtubule associated protein ...  209     2e-60


>CDD:427641 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 
family).  
Length=477

 Score = 209 bits (533),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 122/414 (29%), Positives = 195/414 (47%), Gaps = 30/414 (7%)

Query  40   PLNRCLSFLREKHGAMSKMHRERFEQVKKLVAALESYSSHLESSFVTIELPPTAPGSSIS  99
             L +    L  +   + K    R  ++K+L+  L+     L       E P       + 
Sbjct  87   SLLQKEKKLDTQLEHLRKEKAPRLAEIKELLEQLQQLCEELG------EEP-----LPLL  135

Query  100  PSFDLSPTYVTALDNEFTRVYEEYHRRLEFVKTTCEEIIKLWAELGTPQVQTDTNIVKH-  158
                 S   + +       +  E  RRLE V    ++I  L  EL    +   T+  +  
Sbjct  136  IDPLPSLEELESFRKHLENLRNEKERRLEEVNELKKQIKLLMEELD---LVPGTDFEEDL  192

Query  159  YRESPEQLGLHESDLANLTAKREKLLEEKRSRERKLKELRTAVESLWERFGVEECDRKAF  218
              ES +   L   ++  L    ++L E+K  RE K+ +LR  +  LW R  V + ++++F
Sbjct  193  LCESEDNFCLSRENIDKLRKLIKQLEEQKAEREEKIDDLREKILELWNRLQVPQEEQESF  252

Query  219  LAANRGCGLRTINEFEEELARLNELKRQNLHLFVEDARCRLQELWDGLYFSEEEMLDFTP  278
            +  N      TI+   EEL RL ELK++N+   +ED R  ++ELWD L++S E+   F P
Sbjct  253  VRENNSLSQDTIDALREELQRLEELKKKNIKKLIEDLRVEIEELWDKLFYSTEQRKRFIP  312

Query  279  AFSDVYSDALLEAHEAEIARLEALKEQRAPTLQLIERHKSLLSEREALAASSQDASRLMA  338
             F ++Y++ LLE HE E+ RL+   E     L+L+E+ + L  + E L A + D SR   
Sbjct  313  FFEELYTEDLLELHELELKRLKEEYESNKEILELVEKWEELWEDMEELEAKANDPSRFNN  372

Query  339  RGNKGERRDPGKL-LREEKMRKRIAKELPKVEADLRKELERWEEEYGRPFLVHGERYLDE  397
            RG        GKL L+EEK RKR+ ++LPK+E +L +++E WE E+GRPFLV+GE+ L+ 
Sbjct  373  RG--------GKLLLKEEKERKRLTRKLPKIEQELTEKVEAWESEFGRPFLVNGEKLLEI  424

Query  398  LTPVIAKPPPRSKTPSAPPSANSKAGFGRPQPPSRPASVMRGPPPPRSATRTPT  451
            +         R +      S   K              ++ G  P  +  RTP+
Sbjct  425  I--AEQWEELRQEKERERLSQRKKLK----GSKQTEREMLYGSAPNSTLHRTPS  472



Lambda      K        H        a         alpha
   0.312    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905521060


Query= TCONS_00018661

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00018662

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  90.2    5e-25
CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain. This family...  64.2    2e-13


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 90.2 bits (225),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 34/65 (52%), Positives = 44/65 (68%), Gaps = 2/65 (3%)

Query  7   DLYEVLEVSRSATKDEIRKAYRKAALASHPDKVPEAEREAAEVRFKAVQEAYDILYDEDK  66
           D YE+L VS  A+ +EI+KAYRK AL  HPDK P      AE +FK + EAY++L D +K
Sbjct  1   DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGD--PEAEEKFKEINEAYEVLSDPEK  58

Query  67  RHLYD  71
           R +YD
Sbjct  59  RAIYD  63


>CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain.  This family consists 
of the C terminal region of the DnaJ protein. It is always 
found associated with pfam00226 and pfam00684. DnaJ is a 
chaperone associated with the Hsp70 heat-shock system involved 
in protein folding and renaturation after stress. The two 
C-terminal domains CTDI and CTDII, both incorporated in this 
family are necessary for maintaining the J-domains in their 
specific relative positions. Structural analysis of Structure 
1nlt shows that pfam00684 is nested within this DnaJ C-terminal 
region.
Length=213

 Score = 64.2 bits (157),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 31/61 (51%), Gaps = 2/61 (3%)

Query  128  TKYEVRLEDLYKGKTVKFASTKNVICSLCQGKGGKERATAKKCSTCDGQGLKQILTRMGQ  187
             + E+ LE+ Y G T K   T+NVIC  C G G K   + K C  C G G  Q+  + G 
Sbjct  3    YELELTLEEAYFGCTKKIKITRNVICDTCGGSGAKPGTSPKTCPCCGGGG--QVRRQFGF  60

Query  188  F  188
            F
Sbjct  61   F  61



Lambda      K        H        a         alpha
   0.315    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00013165

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    479     8e-168


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 479 bits (1236),  Expect = 8e-168, Method: Composition-based stats.
 Identities = 167/383 (44%), Positives = 230/383 (60%), Gaps = 21/383 (5%)

Query  35   APSVGHCNTMGTASTMNALAEALGMALPGSAAIPAPYRERGQCAYDTGLQIVEMVHADRK  94
             P  G C  MGTA+TM  LAEALG++LPGSA IPA   ER + A + G +IVE+V  D K
Sbjct  149  CPGCGSCGGMGTANTMACLAEALGLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIK  208

Query  95   PSDIMTREAFENAIVVNTAIGGSTNAPIHIGAIAKHIGVDLSLDDWDRLGFHIPLLVNMQ  154
            P DI+TR+AFENAIVV+ A+GGSTNA +H+ AIA+  GVDL+LDD+DR+   +PLL +++
Sbjct  209  PRDILTRKAFENAIVVDMALGGSTNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLK  268

Query  155  PAGELLGEEYYRAGGLPAVMAELLDAGKLHADILTCNGRTVKENVQGKHTWDRRMIRAYD  214
            P+G+ L E+++RAGG+PAV+ ELLDA  LH D+LT  G+T+ EN+      D+ +IR  D
Sbjct  269  PSGKYLMEDFHRAGGVPAVLKELLDA-LLHGDVLTVTGKTLGENLADAEVRDQDVIRPLD  327

Query  215  DPLMKDAGFLHLKGTLF-NSAIMKTCVISTEFRQKFLENPDDPNAFEGAVIVFDGPEDYH  273
            +P+    G   LKG L  + A++KT  +  E              FEG   VFD  ED  
Sbjct  328  NPISPTGGLAVLKGNLAPDGAVVKTSAVDPEMLV-----------FEGPARVFDSEEDAL  376

Query  274  HRLEDPNTPIDDRTILIMRGAGPLGYPGAAEVVNMHPPGRLLRQGV-HSLPCIGDGRQSG  332
              + D    I    ++++R  GP G PG  E+  + P   LL  G+   +  I DGR SG
Sbjct  377  AAILD--GKIKAGDVVVIRYEGPKGGPGMPEM--LTPTSALLGAGLGKDVALITDGRFSG  432

Query  333  TSGSPSILNASPEAAAGGNLALLRDGDRLRVDLNKRHVDILVPAEELEKRKKALEANGGY  392
             S  PSI + SPEAA GG +AL+RDGD +R+D+  R +D+LV  EEL  R+ A +     
Sbjct  433  ASRGPSIGHVSPEAAVGGPIALVRDGDIIRIDIPNRTLDLLVSDEELAARRAAWKPPEP-  491

Query  393  GVPESQTPWQDLFRREVAQLSEG  415
                    +   + + V+  SEG
Sbjct  492  --KVKGRGYLAKYAKLVSSASEG  512



Lambda      K        H        a         alpha
   0.318    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 533728992


Query= TCONS_00013166

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    479     8e-168


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 479 bits (1236),  Expect = 8e-168, Method: Composition-based stats.
 Identities = 167/383 (44%), Positives = 230/383 (60%), Gaps = 21/383 (5%)

Query  35   APSVGHCNTMGTASTMNALAEALGMALPGSAAIPAPYRERGQCAYDTGLQIVEMVHADRK  94
             P  G C  MGTA+TM  LAEALG++LPGSA IPA   ER + A + G +IVE+V  D K
Sbjct  149  CPGCGSCGGMGTANTMACLAEALGLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIK  208

Query  95   PSDIMTREAFENAIVVNTAIGGSTNAPIHIGAIAKHIGVDLSLDDWDRLGFHIPLLVNMQ  154
            P DI+TR+AFENAIVV+ A+GGSTNA +H+ AIA+  GVDL+LDD+DR+   +PLL +++
Sbjct  209  PRDILTRKAFENAIVVDMALGGSTNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLK  268

Query  155  PAGELLGEEYYRAGGLPAVMAELLDAGKLHADILTCNGRTVKENVQGKHTWDRRMIRAYD  214
            P+G+ L E+++RAGG+PAV+ ELLDA  LH D+LT  G+T+ EN+      D+ +IR  D
Sbjct  269  PSGKYLMEDFHRAGGVPAVLKELLDA-LLHGDVLTVTGKTLGENLADAEVRDQDVIRPLD  327

Query  215  DPLMKDAGFLHLKGTLF-NSAIMKTCVISTEFRQKFLENPDDPNAFEGAVIVFDGPEDYH  273
            +P+    G   LKG L  + A++KT  +  E              FEG   VFD  ED  
Sbjct  328  NPISPTGGLAVLKGNLAPDGAVVKTSAVDPEMLV-----------FEGPARVFDSEEDAL  376

Query  274  HRLEDPNTPIDDRTILIMRGAGPLGYPGAAEVVNMHPPGRLLRQGV-HSLPCIGDGRQSG  332
              + D    I    ++++R  GP G PG  E+  + P   LL  G+   +  I DGR SG
Sbjct  377  AAILD--GKIKAGDVVVIRYEGPKGGPGMPEM--LTPTSALLGAGLGKDVALITDGRFSG  432

Query  333  TSGSPSILNASPEAAAGGNLALLRDGDRLRVDLNKRHVDILVPAEELEKRKKALEANGGY  392
             S  PSI + SPEAA GG +AL+RDGD +R+D+  R +D+LV  EEL  R+ A +     
Sbjct  433  ASRGPSIGHVSPEAAVGGPIALVRDGDIIRIDIPNRTLDLLVSDEELAARRAAWKPPEP-  491

Query  393  GVPESQTPWQDLFRREVAQLSEG  415
                    +   + + V+  SEG
Sbjct  492  --KVKGRGYLAKYAKLVSSASEG  512



Lambda      K        H        a         alpha
   0.318    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 533728992


Query= TCONS_00013167

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain. This family...  215     7e-69
CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  93.3    3e-24
CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The cen...  89.2    8e-23


>CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain.  This family consists 
of the C terminal region of the DnaJ protein. It is always 
found associated with pfam00226 and pfam00684. DnaJ is a 
chaperone associated with the Hsp70 heat-shock system involved 
in protein folding and renaturation after stress. The two 
C-terminal domains CTDI and CTDII, both incorporated in this 
family are necessary for maintaining the J-domains in their 
specific relative positions. Structural analysis of Structure 
1nlt shows that pfam00684 is nested within this DnaJ C-terminal 
region.
Length=213

 Score = 215 bits (550),  Expect = 7e-69, Method: Composition-based stats.
 Identities = 87/224 (39%), Positives = 117/224 (52%), Gaps = 14/224 (6%)

Query  128  TKYEVRLEDLYKGKTVKFASTKNVICSLCQGKGGKERATAKKCSTCDGQGFKQILTRMGQ  187
             + E+ LE+ Y G T K   T+NVIC  C G G K   + K C  C G G  Q+  + G 
Sbjct  3    YELELTLEEAYFGCTKKIKITRNVICDTCGGSGAKPGTSPKTCPCCGGGG--QVRRQFGF  60

Query  188  FLTPSTVTCSTCNGQGEFFSPKDKCKKCKGNKTVEEKKMLEIYIPRGAKEGDKIVLEGEA  247
            F      TC+ C   G      DKC KC G   V EKK LE+ IP G  +G +I L GE 
Sbjct  61   F-----STCTCCPCCGGGGKIIDKCCKCCGGGGVVEKKTLEVKIPAGVDDGQRIRLRGEG  115

Query  248  DQAP-GQEPGDIVFHIVEEEHPVFRRAGADLTANIDVTLAEALTGFSRVVIKHLDGRGIE  306
            D    G  PGD+   I  + HPVFRR G DL   + ++L EAL G + + +  LDG+ ++
Sbjct  116  DAGENGGPPGDLYVVIRVKPHPVFRRDGDDLYCTVPISLTEALLGGT-IEVPTLDGK-VK  173

Query  307  ITHPKTPGEVLSPGQVLKVPGEGMPLKRSDARGDLYLVVNIKFP  350
            +  P        PG VL++ G+GMP  +   RGDLY+ V ++ P
Sbjct  174  LKIP----AGTQPGTVLRLKGKGMPRLKGGGRGDLYVTVKVEVP  213


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 93.3 bits (233),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 34/65 (52%), Positives = 44/65 (68%), Gaps = 2/65 (3%)

Query  7   DLYEVLEVSRSATKDEIRKAYRKAALASHPDKVPEAEREAAEVRFKAVQEAYDILYDEDK  66
           D YE+L VS  A+ +EI+KAYRK AL  HPDK P      AE +FK + EAY++L D +K
Sbjct  1   DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGD--PEAEEKFKEINEAYEVLSDPEK  58

Query  67  RHLYD  71
           R +YD
Sbjct  59  RAIYD  63


>CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain.  The central cysteine-rich 
(CR) domain of DnaJ proteins contains four repeats 
of the motif CXXCXGXG where X is any amino acid. The isolated 
cysteine rich domain folds in zinc dependent fashion. 
Each set of two repeats binds one unit of zinc. Although this 
domain has been implicated in substrate binding, no evidence 
of specific interaction between the isolated DNAJ cysteine 
rich domain and various hydrophobic peptides has been found.
Length=65

 Score = 89.2 bits (222),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 2/67 (3%)

Query  153  CSLCQGKGGKERATAKKCSTCDGQGFKQILTRMGQFLTPSTVTCSTCNGQGEFFSPKDKC  212
            C  C G G K       C TC G G  + + + G        TC TC G G+    KD C
Sbjct  1    CPTCNGSGAKPGTKPTTCPTCGGTGQVRRVQQTGPGFFQMQSTCPTCGGTGKII--KDPC  58

Query  213  KKCKGNK  219
            KKCKG  
Sbjct  59   KKCKGKG  65



Lambda      K        H        a         alpha
   0.314    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00018663

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    479     8e-168


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 479 bits (1236),  Expect = 8e-168, Method: Composition-based stats.
 Identities = 167/383 (44%), Positives = 230/383 (60%), Gaps = 21/383 (5%)

Query  35   APSVGHCNTMGTASTMNALAEALGMALPGSAAIPAPYRERGQCAYDTGLQIVEMVHADRK  94
             P  G C  MGTA+TM  LAEALG++LPGSA IPA   ER + A + G +IVE+V  D K
Sbjct  149  CPGCGSCGGMGTANTMACLAEALGLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIK  208

Query  95   PSDIMTREAFENAIVVNTAIGGSTNAPIHIGAIAKHIGVDLSLDDWDRLGFHIPLLVNMQ  154
            P DI+TR+AFENAIVV+ A+GGSTNA +H+ AIA+  GVDL+LDD+DR+   +PLL +++
Sbjct  209  PRDILTRKAFENAIVVDMALGGSTNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLK  268

Query  155  PAGELLGEEYYRAGGLPAVMAELLDAGKLHADILTCNGRTVKENVQGKHTWDRRMIRAYD  214
            P+G+ L E+++RAGG+PAV+ ELLDA  LH D+LT  G+T+ EN+      D+ +IR  D
Sbjct  269  PSGKYLMEDFHRAGGVPAVLKELLDA-LLHGDVLTVTGKTLGENLADAEVRDQDVIRPLD  327

Query  215  DPLMKDAGFLHLKGTLF-NSAIMKTCVISTEFRQKFLENPDDPNAFEGAVIVFDGPEDYH  273
            +P+    G   LKG L  + A++KT  +  E              FEG   VFD  ED  
Sbjct  328  NPISPTGGLAVLKGNLAPDGAVVKTSAVDPEMLV-----------FEGPARVFDSEEDAL  376

Query  274  HRLEDPNTPIDDRTILIMRGAGPLGYPGAAEVVNMHPPGRLLRQGV-HSLPCIGDGRQSG  332
              + D    I    ++++R  GP G PG  E+  + P   LL  G+   +  I DGR SG
Sbjct  377  AAILD--GKIKAGDVVVIRYEGPKGGPGMPEM--LTPTSALLGAGLGKDVALITDGRFSG  432

Query  333  TSGSPSILNASPEAAAGGNLALLRDGDRLRVDLNKRHVDILVPAEELEKRKKALEANGGY  392
             S  PSI + SPEAA GG +AL+RDGD +R+D+  R +D+LV  EEL  R+ A +     
Sbjct  433  ASRGPSIGHVSPEAAVGGPIALVRDGDIIRIDIPNRTLDLLVSDEELAARRAAWKPPEP-  491

Query  393  GVPESQTPWQDLFRREVAQLSEG  415
                    +   + + V+  SEG
Sbjct  492  --KVKGRGYLAKYAKLVSSASEG  512



Lambda      K        H        a         alpha
   0.318    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 533728992


Query= TCONS_00018665

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain. This family...  210     6e-68
CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The cen...  85.3    1e-21


>CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain.  This family consists 
of the C terminal region of the DnaJ protein. It is always 
found associated with pfam00226 and pfam00684. DnaJ is a 
chaperone associated with the Hsp70 heat-shock system involved 
in protein folding and renaturation after stress. The two 
C-terminal domains CTDI and CTDII, both incorporated in this 
family are necessary for maintaining the J-domains in their 
specific relative positions. Structural analysis of Structure 
1nlt shows that pfam00684 is nested within this DnaJ C-terminal 
region.
Length=213

 Score = 210 bits (537),  Expect = 6e-68, Method: Composition-based stats.
 Identities = 87/224 (39%), Positives = 117/224 (52%), Gaps = 14/224 (6%)

Query  54   TKYEVRLEDLYKGKTVKFASTKNVICSLCQGKGGKERATAKKCSTCDGQGFKQILTRMGQ  113
             + E+ LE+ Y G T K   T+NVIC  C G G K   + K C  C G G  Q+  + G 
Sbjct  3    YELELTLEEAYFGCTKKIKITRNVICDTCGGSGAKPGTSPKTCPCCGGGG--QVRRQFGF  60

Query  114  FLTPSTVTCSTCNGQGEFFSPKDKCKKCKGNKTVEEKKMLEIYIPRGAKEGDKIVLEGEA  173
            F      TC+ C   G      DKC KC G   V EKK LE+ IP G  +G +I L GE 
Sbjct  61   F-----STCTCCPCCGGGGKIIDKCCKCCGGGGVVEKKTLEVKIPAGVDDGQRIRLRGEG  115

Query  174  DQAP-GQEPGDIVFHIVEEEHPVFRRAGADLTANIDVTLAEALTGFSRVVIKHLDGRGIE  232
            D    G  PGD+   I  + HPVFRR G DL   + ++L EAL G + + +  LDG+ ++
Sbjct  116  DAGENGGPPGDLYVVIRVKPHPVFRRDGDDLYCTVPISLTEALLGGT-IEVPTLDGK-VK  173

Query  233  ITHPKTPGEVLSPGQVLKVPGEGMPLKRSDARGDLYLVVNIKFP  276
            +  P        PG VL++ G+GMP  +   RGDLY+ V ++ P
Sbjct  174  LKIP----AGTQPGTVLRLKGKGMPRLKGGGRGDLYVTVKVEVP  213


>CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain.  The central cysteine-rich 
(CR) domain of DnaJ proteins contains four repeats 
of the motif CXXCXGXG where X is any amino acid. The isolated 
cysteine rich domain folds in zinc dependent fashion. 
Each set of two repeats binds one unit of zinc. Although this 
domain has been implicated in substrate binding, no evidence 
of specific interaction between the isolated DNAJ cysteine 
rich domain and various hydrophobic peptides has been found.
Length=65

 Score = 85.3 bits (212),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 2/67 (3%)

Query  79   CSLCQGKGGKERATAKKCSTCDGQGFKQILTRMGQFLTPSTVTCSTCNGQGEFFSPKDKC  138
            C  C G G K       C TC G G  + + + G        TC TC G G+    KD C
Sbjct  1    CPTCNGSGAKPGTKPTTCPTCGGTGQVRRVQQTGPGFFQMQSTCPTCGGTGKII--KDPC  58

Query  139  KKCKGNK  145
            KKCKG  
Sbjct  59   KKCKGKG  65



Lambda      K        H        a         alpha
   0.314    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00013168

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain. This family...  210     6e-68
CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The cen...  85.3    1e-21


>CDD:460251 pfam01556, DnaJ_C, DnaJ C terminal domain.  This family consists 
of the C terminal region of the DnaJ protein. It is always 
found associated with pfam00226 and pfam00684. DnaJ is a 
chaperone associated with the Hsp70 heat-shock system involved 
in protein folding and renaturation after stress. The two 
C-terminal domains CTDI and CTDII, both incorporated in this 
family are necessary for maintaining the J-domains in their 
specific relative positions. Structural analysis of Structure 
1nlt shows that pfam00684 is nested within this DnaJ C-terminal 
region.
Length=213

 Score = 210 bits (537),  Expect = 6e-68, Method: Composition-based stats.
 Identities = 87/224 (39%), Positives = 117/224 (52%), Gaps = 14/224 (6%)

Query  54   TKYEVRLEDLYKGKTVKFASTKNVICSLCQGKGGKERATAKKCSTCDGQGFKQILTRMGQ  113
             + E+ LE+ Y G T K   T+NVIC  C G G K   + K C  C G G  Q+  + G 
Sbjct  3    YELELTLEEAYFGCTKKIKITRNVICDTCGGSGAKPGTSPKTCPCCGGGG--QVRRQFGF  60

Query  114  FLTPSTVTCSTCNGQGEFFSPKDKCKKCKGNKTVEEKKMLEIYIPRGAKEGDKIVLEGEA  173
            F      TC+ C   G      DKC KC G   V EKK LE+ IP G  +G +I L GE 
Sbjct  61   F-----STCTCCPCCGGGGKIIDKCCKCCGGGGVVEKKTLEVKIPAGVDDGQRIRLRGEG  115

Query  174  DQAP-GQEPGDIVFHIVEEEHPVFRRAGADLTANIDVTLAEALTGFSRVVIKHLDGRGIE  232
            D    G  PGD+   I  + HPVFRR G DL   + ++L EAL G + + +  LDG+ ++
Sbjct  116  DAGENGGPPGDLYVVIRVKPHPVFRRDGDDLYCTVPISLTEALLGGT-IEVPTLDGK-VK  173

Query  233  ITHPKTPGEVLSPGQVLKVPGEGMPLKRSDARGDLYLVVNIKFP  276
            +  P        PG VL++ G+GMP  +   RGDLY+ V ++ P
Sbjct  174  LKIP----AGTQPGTVLRLKGKGMPRLKGGGRGDLYVTVKVEVP  213


>CDD:459904 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain.  The central cysteine-rich 
(CR) domain of DnaJ proteins contains four repeats 
of the motif CXXCXGXG where X is any amino acid. The isolated 
cysteine rich domain folds in zinc dependent fashion. 
Each set of two repeats binds one unit of zinc. Although this 
domain has been implicated in substrate binding, no evidence 
of specific interaction between the isolated DNAJ cysteine 
rich domain and various hydrophobic peptides has been found.
Length=65

 Score = 85.3 bits (212),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 2/67 (3%)

Query  79   CSLCQGKGGKERATAKKCSTCDGQGFKQILTRMGQFLTPSTVTCSTCNGQGEFFSPKDKC  138
            C  C G G K       C TC G G  + + + G        TC TC G G+    KD C
Sbjct  1    CPTCNGSGAKPGTKPTTCPTCGGTGQVRRVQQTGPGFFQMQSTCPTCGGTGKII--KDPC  58

Query  139  KKCKGNK  145
            KKCKG  
Sbjct  59   KKCKGKG  65



Lambda      K        H        a         alpha
   0.314    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00018666

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00013170

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            95.9    2e-22


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 95.9 bits (239),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 77/368 (21%), Positives = 134/368 (36%), Gaps = 46/368 (13%)

Query  13   ISADLDITSSAVSTLAITLYVLGLAIGPMFMSPVSEVYGRVPVYHAANIIFVAMIIGSAL  72
            ++ DL I+ + +  L +TL+ LG A+       +S+ +GR  V     ++F   ++    
Sbjct  23   LAEDLGISPTEIG-LLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLF  81

Query  73   SWNLAQFLVFRFISGCAGGTPMALGGGTIADITTIEQRAVAMAFFSMGPLAGPVLGPVIG  132
            + +L   LV R + G   G         IAD    E+R  A+   S G   G  LGP++G
Sbjct  82   ASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLG  141

Query  133  GFLAASKGWRWTFWLLAILGGFCSVSAFVIMSETHPKVILERKTASLRADNGNHHLRSKL  192
            G LA+  GWR  F +LAIL    +V   +       K     + A               
Sbjct  142  GLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEA---------------  186

Query  193  AGNPLSPHQVVVQVLIRPTVLLFRSPILFVISLYVALVFGVMYLLFTTFTSVFEGQYGFS  252
                          LI     L R P+L+++     L+FG  +    T+  +++   G S
Sbjct  187  -----------RLSLIVAWKALLRDPVLWLL--LALLLFGFAFFGLLTYLPLYQEVLGLS  233

Query  253  TSVSGLVYLGPGFSLVASMLIFNILNNHLQSAQSKADGVQQHRPENRLLPMIWFSPLVSL  312
              ++GL+    G       L+   L++ L                 R   ++    L+ L
Sbjct  234  ALLAGLLLGLGGLLGAIGRLLLGRLSDRL----------------GRRRRLLLALLLLIL  277

Query  313  GLFIYGWTAYYKVHWMVPIIGTAFMGFGAFFVMMPAQLYLIDVFGSQAAASALGANNLLR  372
                    +   +  +  ++    +GFG   V       + D+   +   +A G  N   
Sbjct  278  AALGLLLLSLT-LSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAG  336

Query  373  HIFSTFLP  380
             +     P
Sbjct  337  SLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.141    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00013173

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    657     0.0  


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 657 bits (1698),  Expect = 0.0, Method: Composition-based stats.
 Identities = 236/542 (44%), Positives = 318/542 (59%), Gaps = 41/542 (8%)

Query  101  KPIIGIAQSGSDLAPCNRHHLELVKRVREGIRAAGGVPFEFPTHPI------QESSRR--  152
            KPIIGIA S SDL PC+ H  EL + V+EG+R AGGVP EF T  +           R  
Sbjct  1    KPIIGIANSYSDLVPCHVHLRELAEAVKEGVREAGGVPAEFNTIGVCDGIAMGHEGMRYS  60

Query  153  -PTAAIDRNLSYLGLVEILHGYFLDGVVLLTGCDKTTPAALMAAATVNIPAICLNVGPML  211
             P+    R L    + E+L  +  DG+VL+ GCDK  P  LMAAA +NIPAI ++ GPML
Sbjct  61   LPS----RELIADSIEEMLRAHPFDGLVLIGGCDKIVPGMLMAAARLNIPAIFVSGGPML  116

Query  212  NGYMKNELAGSGMVVWKGREKYAAGEISREEFIDYVSRGAPSVGHCNTMGTASTMNALAE  271
             G       GSG   ++    YAAG+IS EE ++      P  G C  MGTA+TM  LAE
Sbjct  117  PG-------GSGTDEFEAVGAYAAGKISEEELLEIERAACPGCGSCGGMGTANTMACLAE  169

Query  272  ALGMALPGSAAIPAPYRERGQCAYDTGLQIVEMVHADRKPSDIMTREAFENAIVVNTAIG  331
            ALG++LPGSA IPA   ER + A + G +IVE+V  D KP DI+TR+AFENAIVV+ A+G
Sbjct  170  ALGLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIKPRDILTRKAFENAIVVDMALG  229

Query  332  GSTNAPIHIGAIAKHIGVDLSLDDWDRLGFHIPLLVNMQPAGELLGEEYYRAGGLPAVMA  391
            GSTNA +H+ AIA+  GVDL+LDD+DR+   +PLL +++P+G+ L E+++RAGG+PAV+ 
Sbjct  230  GSTNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLKPSGKYLMEDFHRAGGVPAVLK  289

Query  392  ELLDAGKLHADILTCNGRTVKENVQGKHTWDRRMIRAYDDPLMKDAGFLHLKGTLF-NSA  450
            ELLDA  LH D+LT  G+T+ EN+      D+ +IR  D+P+    G   LKG L  + A
Sbjct  290  ELLDA-LLHGDVLTVTGKTLGENLADAEVRDQDVIRPLDNPISPTGGLAVLKGNLAPDGA  348

Query  451  IMKTCVISTEFRQKFLENPDDPNAFEGAVIVFDGPEDYHHRLEDPNTPIDDRTILIMRGA  510
            ++KT  +  E              FEG   VFD  ED    + D    I    ++++R  
Sbjct  349  VVKTSAVDPEMLV-----------FEGPARVFDSEEDALAAILD--GKIKAGDVVVIRYE  395

Query  511  GPLGYPGAAEVVNMHPPGRLLRQGV-HSLPCIGDGRQSGTSGSPSILNASPEAAAGGNLA  569
            GP G PG  E+  + P   LL  G+   +  I DGR SG S  PSI + SPEAA GG +A
Sbjct  396  GPKGGPGMPEM--LTPTSALLGAGLGKDVALITDGRFSGASRGPSIGHVSPEAAVGGPIA  453

Query  570  LLRDGDRLRVDLNKRHVDILVPAEELEKRKKALEANGGYGVPESQTPWQDLFRREVAQLS  629
            L+RDGD +R+D+  R +D+LV  EEL  R+ A +             +   + + V+  S
Sbjct  454  LVRDGDIIRIDIPNRTLDLLVSDEELAARRAAWKPPEP---KVKGRGYLAKYAKLVSSAS  510

Query  630  EG  631
            EG
Sbjct  511  EG  512



Lambda      K        H        a         alpha
   0.318    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 827357190


Query= TCONS_00013171

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    479     8e-168


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 479 bits (1236),  Expect = 8e-168, Method: Composition-based stats.
 Identities = 167/383 (44%), Positives = 230/383 (60%), Gaps = 21/383 (5%)

Query  35   APSVGHCNTMGTASTMNALAEALGMALPGSAAIPAPYRERGQCAYDTGLQIVEMVHADRK  94
             P  G C  MGTA+TM  LAEALG++LPGSA IPA   ER + A + G +IVE+V  D K
Sbjct  149  CPGCGSCGGMGTANTMACLAEALGLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIK  208

Query  95   PSDIMTREAFENAIVVNTAIGGSTNAPIHIGAIAKHIGVDLSLDDWDRLGFHIPLLVNMQ  154
            P DI+TR+AFENAIVV+ A+GGSTNA +H+ AIA+  GVDL+LDD+DR+   +PLL +++
Sbjct  209  PRDILTRKAFENAIVVDMALGGSTNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLK  268

Query  155  PAGELLGEEYYRAGGLPAVMAELLDAGKLHADILTCNGRTVKENVQGKHTWDRRMIRAYD  214
            P+G+ L E+++RAGG+PAV+ ELLDA  LH D+LT  G+T+ EN+      D+ +IR  D
Sbjct  269  PSGKYLMEDFHRAGGVPAVLKELLDA-LLHGDVLTVTGKTLGENLADAEVRDQDVIRPLD  327

Query  215  DPLMKDAGFLHLKGTLF-NSAIMKTCVISTEFRQKFLENPDDPNAFEGAVIVFDGPEDYH  273
            +P+    G   LKG L  + A++KT  +  E              FEG   VFD  ED  
Sbjct  328  NPISPTGGLAVLKGNLAPDGAVVKTSAVDPEMLV-----------FEGPARVFDSEEDAL  376

Query  274  HRLEDPNTPIDDRTILIMRGAGPLGYPGAAEVVNMHPPGRLLRQGV-HSLPCIGDGRQSG  332
              + D    I    ++++R  GP G PG  E+  + P   LL  G+   +  I DGR SG
Sbjct  377  AAILD--GKIKAGDVVVIRYEGPKGGPGMPEM--LTPTSALLGAGLGKDVALITDGRFSG  432

Query  333  TSGSPSILNASPEAAAGGNLALLRDGDRLRVDLNKRHVDILVPAEELEKRKKALEANGGY  392
             S  PSI + SPEAA GG +AL+RDGD +R+D+  R +D+LV  EEL  R+ A +     
Sbjct  433  ASRGPSIGHVSPEAAVGGPIALVRDGDIIRIDIPNRTLDLLVSDEELAARRAAWKPPEP-  491

Query  393  GVPESQTPWQDLFRREVAQLSEG  415
                    +   + + V+  SEG
Sbjct  492  --KVKGRGYLAKYAKLVSSASEG  512



Lambda      K        H        a         alpha
   0.318    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0683    0.140     1.90     42.6     43.6 

Effective search space used: 533728992


Query= TCONS_00013177

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            95.9    2e-22


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 95.9 bits (239),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 77/368 (21%), Positives = 134/368 (36%), Gaps = 46/368 (13%)

Query  13   ISADLDITSSAVSTLAITLYVLGLAIGPMFMSPVSEVYGRVPVYHAANIIFVAMIIGSAL  72
            ++ DL I+ + +  L +TL+ LG A+       +S+ +GR  V     ++F   ++    
Sbjct  23   LAEDLGISPTEIG-LLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLF  81

Query  73   SWNLAQFLVFRFISGCAGGTPMALGGGTIADITTIEQRAVAMAFFSMGPLAGPVLGPVIG  132
            + +L   LV R + G   G         IAD    E+R  A+   S G   G  LGP++G
Sbjct  82   ASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLG  141

Query  133  GFLAASKGWRWTFWLLAILGGFCSVSAFVIMSETHPKVILERKTASLRADNGNHHLRSKL  192
            G LA+  GWR  F +LAIL    +V   +       K     + A               
Sbjct  142  GLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEA---------------  186

Query  193  AGNPLSPHQVVVQVLIRPTVLLFRSPILFVISLYVALVFGVMYLLFTTFTSVFEGQYGFS  252
                          LI     L R P+L+++     L+FG  +    T+  +++   G S
Sbjct  187  -----------RLSLIVAWKALLRDPVLWLL--LALLLFGFAFFGLLTYLPLYQEVLGLS  233

Query  253  TSVSGLVYLGPGFSLVASMLIFNILNNHLQSAQSKADGVQQHRPENRLLPMIWFSPLVSL  312
              ++GL+    G       L+   L++ L                 R   ++    L+ L
Sbjct  234  ALLAGLLLGLGGLLGAIGRLLLGRLSDRL----------------GRRRRLLLALLLLIL  277

Query  313  GLFIYGWTAYYKVHWMVPIIGTAFMGFGAFFVMMPAQLYLIDVFGSQAAASALGANNLLR  372
                    +   +  +  ++    +GFG   V       + D+   +   +A G  N   
Sbjct  278  AALGLLLLSLT-LSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAG  336

Query  373  HIFSTFLP  380
             +     P
Sbjct  337  SLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.141    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00013172

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    657     0.0  


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 657 bits (1698),  Expect = 0.0, Method: Composition-based stats.
 Identities = 236/542 (44%), Positives = 318/542 (59%), Gaps = 41/542 (8%)

Query  101  KPIIGIAQSGSDLAPCNRHHLELVKRVREGIRAAGGVPFEFPTHPI------QESSRR--  152
            KPIIGIA S SDL PC+ H  EL + V+EG+R AGGVP EF T  +           R  
Sbjct  1    KPIIGIANSYSDLVPCHVHLRELAEAVKEGVREAGGVPAEFNTIGVCDGIAMGHEGMRYS  60

Query  153  -PTAAIDRNLSYLGLVEILHGYFLDGVVLLTGCDKTTPAALMAAATVNIPAICLNVGPML  211
             P+    R L    + E+L  +  DG+VL+ GCDK  P  LMAAA +NIPAI ++ GPML
Sbjct  61   LPS----RELIADSIEEMLRAHPFDGLVLIGGCDKIVPGMLMAAARLNIPAIFVSGGPML  116

Query  212  NGYMKNELAGSGMVVWKGREKYAAGEISREEFIDYVSRGAPSVGHCNTMGTASTMNALAE  271
             G       GSG   ++    YAAG+IS EE ++      P  G C  MGTA+TM  LAE
Sbjct  117  PG-------GSGTDEFEAVGAYAAGKISEEELLEIERAACPGCGSCGGMGTANTMACLAE  169

Query  272  ALGMALPGSAAIPAPYRERGQCAYDTGLQIVEMVHADRKPSDIMTREAFENAIVVNTAIG  331
            ALG++LPGSA IPA   ER + A + G +IVE+V  D KP DI+TR+AFENAIVV+ A+G
Sbjct  170  ALGLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIKPRDILTRKAFENAIVVDMALG  229

Query  332  GSTNAPIHIGAIAKHIGVDLSLDDWDRLGFHIPLLVNMQPAGELLGEEYYRAGGLPAVMA  391
            GSTNA +H+ AIA+  GVDL+LDD+DR+   +PLL +++P+G+ L E+++RAGG+PAV+ 
Sbjct  230  GSTNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLKPSGKYLMEDFHRAGGVPAVLK  289

Query  392  ELLDAGKLHADILTCNGRTVKENVQGKHTWDRRMIRAYDDPLMKDAGFLHLKGTLF-NSA  450
            ELLDA  LH D+LT  G+T+ EN+      D+ +IR  D+P+    G   LKG L  + A
Sbjct  290  ELLDA-LLHGDVLTVTGKTLGENLADAEVRDQDVIRPLDNPISPTGGLAVLKGNLAPDGA  348

Query  451  IMKTCVISTEFRQKFLENPDDPNAFEGAVIVFDGPEDYHHRLEDPNTPIDDRTILIMRGA  510
            ++KT  +  E              FEG   VFD  ED    + D    I    ++++R  
Sbjct  349  VVKTSAVDPEMLV-----------FEGPARVFDSEEDALAAILD--GKIKAGDVVVIRYE  395

Query  511  GPLGYPGAAEVVNMHPPGRLLRQGV-HSLPCIGDGRQSGTSGSPSILNASPEAAAGGNLA  569
            GP G PG  E+  + P   LL  G+   +  I DGR SG S  PSI + SPEAA GG +A
Sbjct  396  GPKGGPGMPEM--LTPTSALLGAGLGKDVALITDGRFSGASRGPSIGHVSPEAAVGGPIA  453

Query  570  LLRDGDRLRVDLNKRHVDILVPAEELEKRKKALEANGGYGVPESQTPWQDLFRREVAQLS  629
            L+RDGD +R+D+  R +D+LV  EEL  R+ A +             +   + + V+  S
Sbjct  454  LVRDGDIIRIDIPNRTLDLLVSDEELAARRAAWKPPEP---KVKGRGYLAKYAKLVSSAS  510

Query  630  EG  631
            EG
Sbjct  511  EG  512



Lambda      K        H        a         alpha
   0.318    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 827357190


Query= TCONS_00018667

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    479     8e-168


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 479 bits (1236),  Expect = 8e-168, Method: Composition-based stats.
 Identities = 167/383 (44%), Positives = 230/383 (60%), Gaps = 21/383 (5%)

Query  35   APSVGHCNTMGTASTMNALAEALGMALPGSAAIPAPYRERGQCAYDTGLQIVEMVHADRK  94
             P  G C  MGTA+TM  LAEALG++LPGSA IPA   ER + A + G +IVE+V  D K
Sbjct  149  CPGCGSCGGMGTANTMACLAEALGLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIK  208

Query  95   PSDIMTREAFENAIVVNTAIGGSTNAPIHIGAIAKHIGVDLSLDDWDRLGFHIPLLVNMQ  154
            P DI+TR+AFENAIVV+ A+GGSTNA +H+ AIA+  GVDL+LDD+DR+   +PLL +++
Sbjct  209  PRDILTRKAFENAIVVDMALGGSTNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLK  268

Query  155  PAGELLGEEYYRAGGLPAVMAELLDAGKLHADILTCNGRTVKENVQGKHTWDRRMIRAYD  214
            P+G+ L E+++RAGG+PAV+ ELLDA  LH D+LT  G+T+ EN+      D+ +IR  D
Sbjct  269  PSGKYLMEDFHRAGGVPAVLKELLDA-LLHGDVLTVTGKTLGENLADAEVRDQDVIRPLD  327

Query  215  DPLMKDAGFLHLKGTLF-NSAIMKTCVISTEFRQKFLENPDDPNAFEGAVIVFDGPEDYH  273
            +P+    G   LKG L  + A++KT  +  E              FEG   VFD  ED  
Sbjct  328  NPISPTGGLAVLKGNLAPDGAVVKTSAVDPEMLV-----------FEGPARVFDSEEDAL  376

Query  274  HRLEDPNTPIDDRTILIMRGAGPLGYPGAAEVVNMHPPGRLLRQGV-HSLPCIGDGRQSG  332
              + D    I    ++++R  GP G PG  E+  + P   LL  G+   +  I DGR SG
Sbjct  377  AAILD--GKIKAGDVVVIRYEGPKGGPGMPEM--LTPTSALLGAGLGKDVALITDGRFSG  432

Query  333  TSGSPSILNASPEAAAGGNLALLRDGDRLRVDLNKRHVDILVPAEELEKRKKALEANGGY  392
             S  PSI + SPEAA GG +AL+RDGD +R+D+  R +D+LV  EEL  R+ A +     
Sbjct  433  ASRGPSIGHVSPEAAVGGPIALVRDGDIIRIDIPNRTLDLLVSDEELAARRAAWKPPEP-  491

Query  393  GVPESQTPWQDLFRREVAQLSEG  415
                    +   + + V+  SEG
Sbjct  492  --KVKGRGYLAKYAKLVSSASEG  512



Lambda      K        H        a         alpha
   0.318    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 533728992


Query= TCONS_00018668

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    479     8e-168


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 479 bits (1236),  Expect = 8e-168, Method: Composition-based stats.
 Identities = 167/383 (44%), Positives = 230/383 (60%), Gaps = 21/383 (5%)

Query  35   APSVGHCNTMGTASTMNALAEALGMALPGSAAIPAPYRERGQCAYDTGLQIVEMVHADRK  94
             P  G C  MGTA+TM  LAEALG++LPGSA IPA   ER + A + G +IVE+V  D K
Sbjct  149  CPGCGSCGGMGTANTMACLAEALGLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIK  208

Query  95   PSDIMTREAFENAIVVNTAIGGSTNAPIHIGAIAKHIGVDLSLDDWDRLGFHIPLLVNMQ  154
            P DI+TR+AFENAIVV+ A+GGSTNA +H+ AIA+  GVDL+LDD+DR+   +PLL +++
Sbjct  209  PRDILTRKAFENAIVVDMALGGSTNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLK  268

Query  155  PAGELLGEEYYRAGGLPAVMAELLDAGKLHADILTCNGRTVKENVQGKHTWDRRMIRAYD  214
            P+G+ L E+++RAGG+PAV+ ELLDA  LH D+LT  G+T+ EN+      D+ +IR  D
Sbjct  269  PSGKYLMEDFHRAGGVPAVLKELLDA-LLHGDVLTVTGKTLGENLADAEVRDQDVIRPLD  327

Query  215  DPLMKDAGFLHLKGTLF-NSAIMKTCVISTEFRQKFLENPDDPNAFEGAVIVFDGPEDYH  273
            +P+    G   LKG L  + A++KT  +  E              FEG   VFD  ED  
Sbjct  328  NPISPTGGLAVLKGNLAPDGAVVKTSAVDPEMLV-----------FEGPARVFDSEEDAL  376

Query  274  HRLEDPNTPIDDRTILIMRGAGPLGYPGAAEVVNMHPPGRLLRQGV-HSLPCIGDGRQSG  332
              + D    I    ++++R  GP G PG  E+  + P   LL  G+   +  I DGR SG
Sbjct  377  AAILD--GKIKAGDVVVIRYEGPKGGPGMPEM--LTPTSALLGAGLGKDVALITDGRFSG  432

Query  333  TSGSPSILNASPEAAAGGNLALLRDGDRLRVDLNKRHVDILVPAEELEKRKKALEANGGY  392
             S  PSI + SPEAA GG +AL+RDGD +R+D+  R +D+LV  EEL  R+ A +     
Sbjct  433  ASRGPSIGHVSPEAAVGGPIALVRDGDIIRIDIPNRTLDLLVSDEELAARRAAWKPPEP-  491

Query  393  GVPESQTPWQDLFRREVAQLSEG  415
                    +   + + V+  SEG
Sbjct  492  --KVKGRGYLAKYAKLVSSASEG  512



Lambda      K        H        a         alpha
   0.318    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 533728992


Query= TCONS_00013174

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459998 pfam00920, ILVD_EDD, Dehydratase family                    479     8e-168


>CDD:459998 pfam00920, ILVD_EDD, Dehydratase family.  
Length=513

 Score = 479 bits (1236),  Expect = 8e-168, Method: Composition-based stats.
 Identities = 167/383 (44%), Positives = 230/383 (60%), Gaps = 21/383 (5%)

Query  35   APSVGHCNTMGTASTMNALAEALGMALPGSAAIPAPYRERGQCAYDTGLQIVEMVHADRK  94
             P  G C  MGTA+TM  LAEALG++LPGSA IPA   ER + A + G +IVE+V  D K
Sbjct  149  CPGCGSCGGMGTANTMACLAEALGLSLPGSATIPAVSAERLRLAREAGRRIVELVEEDIK  208

Query  95   PSDIMTREAFENAIVVNTAIGGSTNAPIHIGAIAKHIGVDLSLDDWDRLGFHIPLLVNMQ  154
            P DI+TR+AFENAIVV+ A+GGSTNA +H+ AIA+  GVDL+LDD+DR+   +PLL +++
Sbjct  209  PRDILTRKAFENAIVVDMALGGSTNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLADLK  268

Query  155  PAGELLGEEYYRAGGLPAVMAELLDAGKLHADILTCNGRTVKENVQGKHTWDRRMIRAYD  214
            P+G+ L E+++RAGG+PAV+ ELLDA  LH D+LT  G+T+ EN+      D+ +IR  D
Sbjct  269  PSGKYLMEDFHRAGGVPAVLKELLDA-LLHGDVLTVTGKTLGENLADAEVRDQDVIRPLD  327

Query  215  DPLMKDAGFLHLKGTLF-NSAIMKTCVISTEFRQKFLENPDDPNAFEGAVIVFDGPEDYH  273
            +P+    G   LKG L  + A++KT  +  E              FEG   VFD  ED  
Sbjct  328  NPISPTGGLAVLKGNLAPDGAVVKTSAVDPEMLV-----------FEGPARVFDSEEDAL  376

Query  274  HRLEDPNTPIDDRTILIMRGAGPLGYPGAAEVVNMHPPGRLLRQGV-HSLPCIGDGRQSG  332
              + D    I    ++++R  GP G PG  E+  + P   LL  G+   +  I DGR SG
Sbjct  377  AAILD--GKIKAGDVVVIRYEGPKGGPGMPEM--LTPTSALLGAGLGKDVALITDGRFSG  432

Query  333  TSGSPSILNASPEAAAGGNLALLRDGDRLRVDLNKRHVDILVPAEELEKRKKALEANGGY  392
             S  PSI + SPEAA GG +AL+RDGD +R+D+  R +D+LV  EEL  R+ A +     
Sbjct  433  ASRGPSIGHVSPEAAVGGPIALVRDGDIIRIDIPNRTLDLLVSDEELAARRAAWKPPEP-  491

Query  393  GVPESQTPWQDLFRREVAQLSEG  415
                    +   + + V+  SEG
Sbjct  492  --KVKGRGYLAKYAKLVSSASEG  512



Lambda      K        H        a         alpha
   0.318    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 533728992


Query= TCONS_00018669

Length=322


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00013175

Length=322


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00018670

Length=322


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00013179

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            103     8e-25


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 103 bits (258),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 77/373 (21%), Positives = 134/373 (36%), Gaps = 51/373 (14%)

Query  61   ISADLDITSSAVSTLAITLYVLGLAIGPMFMSPVSEVYGRVPVYHAANIIFVAMIIGSAL  120
            ++ DL I+ + +  L +TL+ LG A+       +S+ +GR  V     ++F   ++    
Sbjct  23   LAEDLGISPTEIG-LLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLF  81

Query  121  SWNLAQFLVFRFISGCAGGTPMALGGGTIADITTIEQRAVAMAFFSMGPLAGPSDLVQVL  180
            + +L   LV R + G   G         IAD    E+R  A+   S G   G       L
Sbjct  82   ASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGA-----AL  136

Query  181  GPVIGGFLAASKGWRWTFWLLAILGGFCSVSAFVIMSETHPKVILERKTASLRADNGNHH  240
            GP++GG LA+  GWR  F +LAIL    +V   +       K     + A          
Sbjct  137  GPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEA----------  186

Query  241  LRSKLAGNPLSPHQVVVQVLIRPTVLLFRSPILFVISLYVALVFGVMYLLFTTFTSVFEG  300
                               LI     L R P+L+++     L+FG  +    T+  +++ 
Sbjct  187  ----------------RLSLIVAWKALLRDPVLWLL--LALLLFGFAFFGLLTYLPLYQE  228

Query  301  QYGFSTSVSGLVYLGPGFSLVASMLIFNILNNHLQSAQSKADGVQQHRPENRLLPMIWFS  360
              G S  ++GL+    G       L+   L++ L                 R   ++   
Sbjct  229  VLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRL----------------GRRRRLLLAL  272

Query  361  PLVSLGLFIYGWTAYYKVHWMVPIIGTAFMGFGAFFVMMPAQLYLIDVFGSQAAASALGA  420
             L+ L        +   +  +  ++    +GFG   V       + D+   +   +A G 
Sbjct  273  LLLILAALGLLLLSLT-LSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASGL  331

Query  421  NNLLRHIFSTFLP  433
             N    +     P
Sbjct  332  YNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599678264


Query= TCONS_00013176

Length=263


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 290477132


Query= TCONS_00018672

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            90.9    9e-21


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 90.9 bits (226),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 77/373 (21%), Positives = 134/373 (36%), Gaps = 51/373 (14%)

Query  13   ISADLDITSSAVSTLAITLYVLGLAIGPMFMSPVSEVYGRVPVYHAANIIFVAMIIGSAL  72
            ++ DL I+ + +  L +TL+ LG A+       +S+ +GR  V     ++F   ++    
Sbjct  23   LAEDLGISPTEIG-LLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLF  81

Query  73   SWNLAQFLVFRFISGCAGGTPMALGGGTIADITTIEQRAVAMAFFSMGPLAGPSDLVQVL  132
            + +L   LV R + G   G         IAD    E+R  A+   S G   G       L
Sbjct  82   ASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGA-----AL  136

Query  133  GPVIGGFLAASKGWRWTFWLLAILGGFCSVSAFVIMSETHPKVILERKTASLRADNGNHH  192
            GP++GG LA+  GWR  F +LAIL    +V   +       K     + A          
Sbjct  137  GPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEA----------  186

Query  193  LRSKLAGNPLSPHQVVVQVLIRPTVLLFRSPILFVISLYVALVFGVMYLLFTTFTSVFEG  252
                               LI     L R P+L+++     L+FG  +    T+  +++ 
Sbjct  187  ----------------RLSLIVAWKALLRDPVLWLL--LALLLFGFAFFGLLTYLPLYQE  228

Query  253  QYGFSTSVSGLVYLGPGFSLVASMLIFNILNNHLQSAQSKADGVQQHRPENRLLPMIWFS  312
              G S  ++GL+    G       L+   L++ L                 R   ++   
Sbjct  229  VLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRL----------------GRRRRLLLAL  272

Query  313  PLVSLGLFIYGWTAYYKVHWMVPIIGTAFMGFGAFFVMMPAQLYLIDVFGSQAAASALGA  372
             L+ L        +   +  +  ++    +GFG   V       + D+   +   +A G 
Sbjct  273  LLLILAALGLLLLSLT-LSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASGL  331

Query  373  NNLLRHIFSTFLP  385
             N    +     P
Sbjct  332  YNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.141    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00018671

Length=322


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00013178

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            93.3    3e-22


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 93.3 bits (232),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 99/245 (40%), Gaps = 29/245 (12%)

Query  61   ISADLDITSSAVSTLAITLYVLGLAIGPMFMSPVSEVYGRVPVYHAANIIFVAMIIGSAL  120
            ++ DL I+ + +  L +TL+ LG A+       +S+ +GR  V     ++F   ++    
Sbjct  23   LAEDLGISPTEIG-LLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLF  81

Query  121  SWNLAQFLVFRFISGCAGGTPMALGGGTIADITTIEQRAVAMAFFSMGPLAGPVLGPVIG  180
            + +L   LV R + G   G         IAD    E+R  A+   S G   G  LGP++G
Sbjct  82   ASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLG  141

Query  181  GFLAASKGWRWTFWLLAILGGFCSVSAFVIMSETHPKVILERKTASLRADNGNHHLRSKL  240
            G LA+  GWR  F +LAIL    +V   +       K     + A               
Sbjct  142  GLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEA---------------  186

Query  241  AGNPLSPHQVVVQVLIRPTVLLFRSPILFVISLYVALVFGVMYLLFTTFTSVFEGQYGFS  300
                          LI     L R P+L+++     L+FG  +    T+  +++   G S
Sbjct  187  -----------RLSLIVAWKALLRDPVLWLL--LALLLFGFAFFGLLTYLPLYQEVLGLS  233

Query  301  TSVSG  305
              ++G
Sbjct  234  ALLAG  238



Lambda      K        H        a         alpha
   0.323    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00013180

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00018674

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00013181

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459961 pfam00849, PseudoU_synth_2, RNA pseudouridylate syntha...  103     1e-26


>CDD:459961 pfam00849, PseudoU_synth_2, RNA pseudouridylate synthase.  Members 
of this family are involved in modifying bases in RNA 
molecules. They carry out the conversion of uracil bases to 
pseudouridine. This family includes RluD, a pseudouridylate 
synthase that converts specific uracils to pseudouridine in 
23S rRNA. RluA from E. coli converts bases in both rRNA and 
tRNA.
Length=151

 Score = 103 bits (259),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 35/182 (19%)

Query  134  ILVIDKPAGVPVHAAGRYH-YNSIVEILRSQRGQEFVPRPCNRLDRLTSGVMFIAKHPKA  192
             +V++KPAGVPVH         S++ +L  +        P +RLD+ TSG++ +AK  +A
Sbjct  1    YIVVNKPAGVPVHPTDSLTKLLSLLALLLRRELGVKRLYPVHRLDKNTSGLLLLAKDGEA  60

Query  193  ADAITIKLKQRTVQKEYIARVKGRFPDGVVV--CDQPIMSVSPKLGLNRVRATGKDAKTK  250
            A+ +     +R ++KEY+A V     +   +    +   + SP          GK A T 
Sbjct  61   ANKLNKLFPERKIEKEYLALVDKPEEEEGTIKSPIKKEKNKSPF--RKEEELGGKKAVTH  118

Query  251  FRRLAYYPPASPAPERDEDEVTASGDRPATPPPLLANESEGYSIVHCLPLTGRTHQIRVH  310
             + L                                     YS++    +TGR HQIR H
Sbjct  119  LKVLKSG------------------------------SKGDYSLLELELVTGRKHQIRAH  148

Query  311  LQ  312
            L 
Sbjct  149  LA  150



Lambda      K        H        a         alpha
   0.317    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00018675

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459961 pfam00849, PseudoU_synth_2, RNA pseudouridylate syntha...  103     1e-26


>CDD:459961 pfam00849, PseudoU_synth_2, RNA pseudouridylate synthase.  Members 
of this family are involved in modifying bases in RNA 
molecules. They carry out the conversion of uracil bases to 
pseudouridine. This family includes RluD, a pseudouridylate 
synthase that converts specific uracils to pseudouridine in 
23S rRNA. RluA from E. coli converts bases in both rRNA and 
tRNA.
Length=151

 Score = 103 bits (259),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 35/182 (19%)

Query  134  ILVIDKPAGVPVHAAGRYH-YNSIVEILRSQRGQEFVPRPCNRLDRLTSGVMFIAKHPKA  192
             +V++KPAGVPVH         S++ +L  +        P +RLD+ TSG++ +AK  +A
Sbjct  1    YIVVNKPAGVPVHPTDSLTKLLSLLALLLRRELGVKRLYPVHRLDKNTSGLLLLAKDGEA  60

Query  193  ADAITIKLKQRTVQKEYIARVKGRFPDGVVV--CDQPIMSVSPKLGLNRVRATGKDAKTK  250
            A+ +     +R ++KEY+A V     +   +    +   + SP          GK A T 
Sbjct  61   ANKLNKLFPERKIEKEYLALVDKPEEEEGTIKSPIKKEKNKSPF--RKEEELGGKKAVTH  118

Query  251  FRRLAYYPPASPAPERDEDEVTASGDRPATPPPLLANESEGYSIVHCLPLTGRTHQIRVH  310
             + L                                     YS++    +TGR HQIR H
Sbjct  119  LKVLKSG------------------------------SKGDYSLLELELVTGRKHQIRAH  148

Query  311  LQ  312
            L 
Sbjct  149  LA  150



Lambda      K        H        a         alpha
   0.317    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00013182

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459961 pfam00849, PseudoU_synth_2, RNA pseudouridylate syntha...  103     1e-26


>CDD:459961 pfam00849, PseudoU_synth_2, RNA pseudouridylate synthase.  Members 
of this family are involved in modifying bases in RNA 
molecules. They carry out the conversion of uracil bases to 
pseudouridine. This family includes RluD, a pseudouridylate 
synthase that converts specific uracils to pseudouridine in 
23S rRNA. RluA from E. coli converts bases in both rRNA and 
tRNA.
Length=151

 Score = 103 bits (259),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 35/182 (19%)

Query  178  ILVIDKPAGVPVHAAGRYH-YNSIVEILRSQRGQEFVPRPCNRLDRLTSGVMFIAKHPKA  236
             +V++KPAGVPVH         S++ +L  +        P +RLD+ TSG++ +AK  +A
Sbjct  1    YIVVNKPAGVPVHPTDSLTKLLSLLALLLRRELGVKRLYPVHRLDKNTSGLLLLAKDGEA  60

Query  237  ADAITIKLKQRTVQKEYIARVKGRFPDGVVV--CDQPIMSVSPKLGLNRVRATGKDAKTK  294
            A+ +     +R ++KEY+A V     +   +    +   + SP          GK A T 
Sbjct  61   ANKLNKLFPERKIEKEYLALVDKPEEEEGTIKSPIKKEKNKSPF--RKEEELGGKKAVTH  118

Query  295  FRRLAYYPPASPAPERDEDEVTASGDRPATPPPLLANESEGYSIVHCLPLTGRTHQIRVH  354
             + L                                     YS++    +TGR HQIR H
Sbjct  119  LKVLKSG------------------------------SKGDYSLLELELVTGRKHQIRAH  148

Query  355  LQ  356
            L 
Sbjct  149  LA  150



Lambda      K        H        a         alpha
   0.318    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 714336584


Query= TCONS_00013183

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459961 pfam00849, PseudoU_synth_2, RNA pseudouridylate syntha...  104     5e-27


>CDD:459961 pfam00849, PseudoU_synth_2, RNA pseudouridylate synthase.  Members 
of this family are involved in modifying bases in RNA 
molecules. They carry out the conversion of uracil bases to 
pseudouridine. This family includes RluD, a pseudouridylate 
synthase that converts specific uracils to pseudouridine in 
23S rRNA. RluA from E. coli converts bases in both rRNA and 
tRNA.
Length=151

 Score = 104 bits (260),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 35/182 (19%)

Query  57   ILVIDKPAGVPVHAAGRYH-YNSIVEILRSQRGQEFVPRPCNRLDRLTSGVMFIAKHPKA  115
             +V++KPAGVPVH         S++ +L  +        P +RLD+ TSG++ +AK  +A
Sbjct  1    YIVVNKPAGVPVHPTDSLTKLLSLLALLLRRELGVKRLYPVHRLDKNTSGLLLLAKDGEA  60

Query  116  ADAITIKLKQRTVQKEYIARVKGRFPDGVVV--CDQPIMSVSPKLGLNRVRATGKDAKTK  173
            A+ +     +R ++KEY+A V     +   +    +   + SP          GK A T 
Sbjct  61   ANKLNKLFPERKIEKEYLALVDKPEEEEGTIKSPIKKEKNKSPF--RKEEELGGKKAVTH  118

Query  174  FRRLAYYPPASPAPERDEDEVTASGDRPATPPPLLANESEGYSIVHCLPLTGRTHQIRVH  233
             + L                                     YS++    +TGR HQIR H
Sbjct  119  LKVLKSG------------------------------SKGDYSLLELELVTGRKHQIRAH  148

Query  234  LQ  235
            L 
Sbjct  149  LA  150



Lambda      K        H        a         alpha
   0.316    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00013184

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459961 pfam00849, PseudoU_synth_2, RNA pseudouridylate syntha...  103     1e-26


>CDD:459961 pfam00849, PseudoU_synth_2, RNA pseudouridylate synthase.  Members 
of this family are involved in modifying bases in RNA 
molecules. They carry out the conversion of uracil bases to 
pseudouridine. This family includes RluD, a pseudouridylate 
synthase that converts specific uracils to pseudouridine in 
23S rRNA. RluA from E. coli converts bases in both rRNA and 
tRNA.
Length=151

 Score = 103 bits (259),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 35/182 (19%)

Query  134  ILVIDKPAGVPVHAAGRYH-YNSIVEILRSQRGQEFVPRPCNRLDRLTSGVMFIAKHPKA  192
             +V++KPAGVPVH         S++ +L  +        P +RLD+ TSG++ +AK  +A
Sbjct  1    YIVVNKPAGVPVHPTDSLTKLLSLLALLLRRELGVKRLYPVHRLDKNTSGLLLLAKDGEA  60

Query  193  ADAITIKLKQRTVQKEYIARVKGRFPDGVVV--CDQPIMSVSPKLGLNRVRATGKDAKTK  250
            A+ +     +R ++KEY+A V     +   +    +   + SP          GK A T 
Sbjct  61   ANKLNKLFPERKIEKEYLALVDKPEEEEGTIKSPIKKEKNKSPF--RKEEELGGKKAVTH  118

Query  251  FRRLAYYPPASPAPERDEDEVTASGDRPATPPPLLANESEGYSIVHCLPLTGRTHQIRVH  310
             + L                                     YS++    +TGR HQIR H
Sbjct  119  LKVLKSG------------------------------SKGDYSLLELELVTGRKHQIRAH  148

Query  311  LQ  312
            L 
Sbjct  149  LA  150



Lambda      K        H        a         alpha
   0.317    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00013185

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.305    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00013186

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00013189

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00018676

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00013187

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00013188

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00018677

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00018678

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00018679

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00018680

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00013190

Length=2896
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431223 pfam10344, Fmp27, Mitochondrial protein from FMP27. Th...  773     0.0  
CDD:431231 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 prote...  692     0.0  
CDD:463055 pfam10351, Apt1, Golgi-body localization protein domai...  615     0.0  
CDD:431201 pfam10293, DUF2405, Domain of unknown function (DUF240...  249     1e-76
CDD:402113 pfam10347, Fmp27_GFWDK, RNA pol II promoter Fmp27 prot...  220     2e-66
CDD:431207 pfam10305, Fmp27_SW, RNA pol II promoter Fmp27 protein...  141     7e-40


>CDD:431223 pfam10344, Fmp27, Mitochondrial protein from FMP27.  This family 
contains mitochondrial FMP27 proteins which in yeasts together 
with SEN1 are long genes that exist in a looped conformation, 
effectively bringing together their promoter and terminator 
regions. Pol-II is located at both ends of FMP27 when 
this gene is transcribed from a GAL1 promoter under induced 
and non-induced conditions. The exact function of the Fmp27 
protein is not certain.
Length=865

 Score = 773 bits (1998),  Expect = 0.0, Method: Composition-based stats.
 Identities = 359/913 (39%), Positives = 502/913 (55%), Gaps = 103/913 (11%)

Query  23   IFAIVRIATGVSIQRIGYFSLRRIAYVPREGIQVELRGLGLSLHPPSFAQPTWLSLRLTE  82
            ++ ++R+ TG+SI R G FSLR I   P++ +++E+R +   LH   FA PTWL +   E
Sbjct  7    LWFLIRLITGISIGRFGPFSLRGITLTPKD-VKIEIRKVRFRLH---FANPTWLRIDGLE  62

Query  83   LKVTVNPSALGKGRNSDTAKADVPEPQSSSDVADTSQDGGESSPARARRSKTWKTLTRMK  142
            L              SD+   +     S                    R KTW +LT  K
Sbjct  63   LV---------DVTISDSKDKEPKSADSKGPQ--------PIDSFSQSRIKTWLSLTPPK  105

Query  143  EQVKRLHRKI-HWLKLVDVVAVNTTINFLEAGQFQIGSLSLAVDTRRKMVDRAKVFRRKK  201
            E +KRLHR +  W+  VD+   NTT++ L+ G  QIGSLSL VD RRKMVDR        
Sbjct  106  ELLKRLHRTLLRWIDQVDIHIFNTTVHDLDVGITQIGSLSLTVDERRKMVDR--------  157

Query  202  DESGELCPAEWIMNVQNVLLAVDGNEPAEVLDHVQVNIHGLLHSDR-DGLRDTSIALKIG  260
                E   AE+I+N++NVL  VDGNE  E+LDH  +N+HG L  D   GLRD +I+LK+G
Sbjct  158  ----ESEKAEFIINLRNVLFTVDGNEA-EILDHCTLNLHGKLSKDLPGGLRDLAISLKLG  212

Query  261  RLHIPYDELATVSQRIKQFRRSRKD-LVVNDTDDEISFADFVEELDRPGSRDDVIVQRVA  319
            RLHIP D+L ++  ++K+ + S+ +  V N+   E+S     EEL+ P  + +  VQ+V 
Sbjct  213  RLHIPLDDLMSLVAQLKKSKESKPEPSVKNEEVPEVSL----EELEEP--KSEKTVQKVE  266

Query  320  DSKEFASSLLRGIREIQLALSFFRLSRIVQPSSAGQKSVYLNVISHEIGVDLHRMDQRSP  379
             S +  SSLLR I EIQ+ +  F L+ I   S     SV L V S E+G +LHR+D++SP
Sbjct  267  SSLDLVSSLLRLISEIQIKVENFGLTDIPFSSKDDLSSVSLYVSSKEVGFNLHRLDKKSP  326

Query  380  AHRMYFQRDDVAHQALLAAISLSVSLDDSSGETDNIVYIPMATTTIKTTLPSKTVGSFDN  439
              +M F  DDV HQALLA  SL VSLDD+S   D I+ IP AT T KT L SK   S D+
Sbjct  327  GFKMLFDPDDVPHQALLALTSLKVSLDDNSHSPDRILEIPSATFTGKTNLLSK--SSDDD  384

Query  440  HNAEERNTNILFANFVVTSPSLDLEPHHLDRLLGLVQT----RASSSRGKKRDN---HRL  492
              AEE N NIL  N  +TSPS+DL+   L  LL L++     ++S S  KK+     H L
Sbjct  385  VTAEEFNNNILELNLTLTSPSIDLDHEQLSLLLSLLKNIKLLKSSPSLKKKKSRRILHSL  444

Query  493  ISRLLPKANIKLSVHEPVVRLVLPINKESAGSDDDYNLLISSISAIALDIDSSHSSEGGV  552
            +SR LPK N+K S+ EPV+R+ LP       S   ++LLISSIS ++ D++SSHSSE  +
Sbjct  445  LSRYLPKVNLKFSIEEPVIRIHLPNP-----SKSKFDLLISSISVLSFDLESSHSSESEL  499

Query  553  HYSLSSVYRVADHKLYYQTPTGVKHNLLTTETLELKVLLNASPEVCVIATGTLNTCSVHM  612
            HYS  +  R++ H+LYYQ P G KHN+L  +++ELKV LN  P + V  +G+LNT S+ +
Sbjct  500  HYSFITYLRLSSHQLYYQNPKGSKHNILKLDSIELKVALNLLPNLKVKLSGSLNTLSLDL  559

Query  613  VNGEVNRGIRQVVEQLRAQMQNRRRASM---------GHQER-------------KPSIL  650
             N E+  GI  VV QLR Q++NR    +                           K  + 
Sbjct  560  SNLEILLGINDVVRQLRRQVRNRLNLGVENEYFNDIYNEFRSRLEESEEQESTPLKEKLF  619

Query  651  RRIPPWLLNFQFEATGLSLEIAG-------------VDSTVSKLSRGVSLQLQSWTAEYR  697
            RR+P WLL+ +FE + LSL++               +D +VS   RGVS++L+  + EY+
Sbjct  620  RRLPSWLLSIKFELSSLSLDLGSRSVLIPKDIYDSTLDDSVSDFIRGVSIKLRKLSFEYK  679

Query  698  AQKAE-PTHISLVRRRTPSHS-TIGDESPFRFPPTSPPRQIQHGAADGRRLAFHARGFEG  755
              K     ++  +RR T S S    D         SPPR+   G +DG  L   + G EG
Sbjct  680  NLKLSLGNNVRSIRRFTLSSSAGESDSDDD-----SPPRESDSGLSDGSTLDSTSSGLEG  734

Query  756  FVIESEDYLEPEPFFSLPRFEVALSTQSDRLGPIFHINSVLKGVYLQYSLYRYYCLGVAV  815
             VIES+D LE EPF SLP F++ +ST SD LGPI H+N  +  +  QYSLYR +C+  A+
Sbjct  735  EVIESDDKLESEPFLSLPVFDIKVSTLSDDLGPILHLNLHIDKIDGQYSLYRLFCVIYAL  794

Query  816  SVIQDAFI--QHPTEAPTQPPFEWHPKDSASSPSVPRPPLQRSELITVDIRATVVQIKTF  873
            S+++  F       + P+    +   + S S            EL+TVD++   V +   
Sbjct  795  SLLKSFFGKPISTIKRPSTK--DEIQELSKSLKKPKFDWKGLKELLTVDVKVKSVAVVVR  852

Query  874  LPADPPMLLQIYG  886
            LP D P+LL+I+G
Sbjct  853  LPNDVPLLLEIFG  865


>CDD:431231 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 protein domain. 
 Fmp27_WPPW is a conserved domain of a family of proteins 
involved in RNA polymerase II transcription initiation. It 
contains characteristic HQR and WPPW sequence motifs. and is 
towards the C-terminal in members which contain Fmp27_SW pfam10305.
Length=480

 Score = 692 bits (1789),  Expect = 0.0, Method: Composition-based stats.
 Identities = 257/527 (49%), Positives = 334/527 (63%), Gaps = 51/527 (10%)

Query  1655  GLKVRLDSLKLDVHQRREQIKTVAKGRLKQTKTSAMRINQGQLDLQAADFRAVSVSIEGT  1714
             GLK ++DS  LD+HQRRE++ T  K   K  K S M+ N+G++DL++AD RAVS S +GT
Sbjct  1     GLKAKVDSFMLDLHQRREKLTTYNKKLNKTKKVSKMKFNEGEIDLESADIRAVSASFKGT  60

Query  1715  NLDDIQKNRDDIISSFQQPVPSV-DLSRFTIPDQNLDWVDMDDFVELDWILPQESNPKTH  1773
             ++++I  +    +SS Q    S  DLSRF IPD ++ W+DMDDFVELDWILP  SNPKT 
Sbjct  61    SVEEILASSLSSLSSDQSSSDSSSDLSRFDIPDNDMSWIDMDDFVELDWILPLSSNPKTK  120

Query  1774  ILPLAFTPRFTYFRQTDHGD-ITPDQTGYSPFGHEPTHDCVMSESNEPRRVQMELIRDRL  1832
             ILPLA++PRFTYFRQTD+GD    D  G SPFG+EP+HDC+M + N+PRRVQ ELI +RL
Sbjct  121   ILPLAYSPRFTYFRQTDYGDKYQGDPKGISPFGNEPSHDCIMGKDNDPRRVQKELIEERL  180

Query  1833  ATVEAQIRNFDRRIGEQELRMAKDVDHHSDLKKEHDDFIRQAESLARRRAFLVTGLRRLE  1892
               +E QI   + ++GE EL+  KD     +LK + ++  ++   L  +  FL T L  LE
Sbjct  181   EELEEQIEEHEEKLGELELKSEKD----EELKDKIEELEKEIHKLKEKLEFLETLLEDLE  236

Query  1893  AQLSREEKTPMDKKPENFASDSSFRLGADSDSTNDGKEADLDGLYSSHNDEYASDFNNRF  1952
               L   E            S+ S    + S S+ D           + + E ASDFNNRF
Sbjct  237   ISLEPSESLSSKS------SELSDTSTSYSFSSMDS---------LASSSESASDFNNRF  281

Query  1953  LIHNMQLKWNNSLRNIILRYIHQVSQRRGFVYYMSRRAVKFILDIVEEQNKNNQRRSKMF  2012
             +IHNMQLKWNNSLRNIILRYIHQVSQRRGFVYYMSR+AVKFI D+VEEQ K+ + +S   
Sbjct  282   IIHNMQLKWNNSLRNIILRYIHQVSQRRGFVYYMSRKAVKFIEDLVEEQEKSKKTKSSES  341

Query  2013  KDSSRRPSNADTDED-SVEDRIEQLLNDTKRFVSAEEQESVDSVTQTQPDSDSSSENISP  2071
               SS   S+ D + +  +E+R E+LL D K                              
Sbjct  342   GSSSTTSSSEDDESNEELEERFEELLRDVKN----------------------------D  373

Query  2072  EFTPQNSYYLRLIAPQIQLQSAKNQKSVLLVAASGMQLKVISIMDKERVSDDVSGLVQRR  2131
             +FT QNSY +RLIAPQIQLQS KN  S +LV A  ++LK++SI DKER+ DDVSGLV+RR
Sbjct  374   DFTAQNSYLVRLIAPQIQLQSEKNPDSCVLVTAKDIELKIVSIDDKERIDDDVSGLVERR  433

Query  2132  FSLDMDGAQFFVATQKNLMN-HLQFYAGNKYGNAPGSAWPPWVTLEA  2177
             F + +D AQFFV  +K+  +  L F++GN YG   GS+WPPW+ LE 
Sbjct  434   FGVLLDDAQFFVFHKKDFSDQSLLFFSGNGYGQEKGSSWPPWLPLEV  480


>CDD:463055 pfam10351, Apt1, Golgi-body localization protein domain.  This 
is the C-terminus of a family of proteins conserved from plants 
to humans. The plant members are localized to the Golgi 
proteins and appear to regulate membrane trafficking, as they 
are required for rapid vesicle accumulation at the tip of 
the pollen tube. The C-terminus probably contains the Golgi 
localization signal and it is well-conserved.
Length=466

 Score = 615 bits (1589),  Expect = 0.0, Method: Composition-based stats.
 Identities = 243/553 (44%), Positives = 315/553 (57%), Gaps = 88/553 (16%)

Query  2191  IIQKTSASLRYDKYNNLRLKYNEEVAKGQSKHVGPDGQETRMDHISVDFPHFRAICDSAE  2250
             ++++TS SLRYDKYN LRLK N+E          P   E+RMD ++VDFP   A  +S++
Sbjct  1     VVERTSMSLRYDKYNPLRLKLNDESV------STPLEDESRMDELTVDFPKLVATANSSQ  54

Query  2251  YYSMYIIVLDLLLYSEPLEKVRNERLERILLTSDFSDLRGAPEMVFKLQSRIRQLEEIKE  2310
             YY++Y IV DLLLYSEP EK R+E+LE+++L SDFSDL G  EMV KLQ RIRQLEEIK 
Sbjct  55    YYALYDIVTDLLLYSEPKEKERSEKLEKLMLASDFSDLEGLDEMVKKLQERIRQLEEIKL  114

Query  2311  HFQINAQNLDKHGWEDRLVLEKDLAQCEDELFFLMKAITTSQ-RRIEPTTSGANGILRWK  2369
             +FQ+    LD  G ED L+LEK+LA+C++ELF LMKAI TSQ R+ E   S  +  LRW 
Sbjct  115   NFQLRDDYLDDEGLEDLLLLEKELAECKEELFLLMKAIKTSQLRKGESKDSSKSSALRWS  174

Query  2370  ISASEVVWHLMMDQCQPLVEFQLRNAEYDRTDNSDGSNHNLVAVERIYGLNLLPDAIYPQ  2429
             ISA E++WHL+ D  +P  +  L N+ YDRTDNSDGSN N + +  + G NLLP+AIYP+
Sbjct  175   ISADEIIWHLLDDDGEPFADLALANSSYDRTDNSDGSNSNRLEIGSLQGFNLLPNAIYPE  234

Query  2430  IIVPYLDQAKNLDEPDENMIRVKWHMLEAVGGIPVLDDFEVSLFPLKIQLERELGQRVFE  2489
             ++ PY D   + ++  + M+RV W ML  VGGIPV++ FEV+L PLKIQLE E G+++ E
Sbjct  235   LLSPYEDPGDSPEDGRKPMLRVFWKMLPPVGGIPVVEHFEVNLQPLKIQLEHETGKKLME  294

Query  2490  YIFPNVRSNGFDGGFSPFMIKNMKPLDVSESEEDNDSPSPPPSAQGASDISTEDLSGPKG  2549
             YIFP   S+  +                S+ ++D+D  S   S+  ++  S+   S    
Sbjct  295   YIFPKRDSDSQENE----------ASVKSDDDDDSDDSSSSSSSSSSTSSSSSSSSSSSS  344

Query  2550  PGAIELRLQPTRSLADETRPRSRHSSYNLKGLGMTAIHKKEQQGSNRLGVSQSDRPATSA  2609
               ++ELR   + S           SS             K     + L  S S+R     
Sbjct  345   SSSLELRSSTSSSS----SSELSSSS----------SSSKSSSEEDSLESSASERA----  386

Query  2610  SSLSKKKSVESMRMLSRQPTDKSIANGSTANVGEDKGKKFTLIPNKSGKSKEAQDDLSQM  2669
                                                                   DDL +M
Sbjct  387   -----------------------------------------------------SDDLEEM  393

Query  2670  MSRASSYMTLAHVKVNDVVLCLSYKGKGEHNLEDIHDFVFRLPVLEYRNKTWSNLDLALR  2729
              SRAS YMT  ++K+  VVLCLSYKGK E NLED+HD VFRLP LEYRNKTWS LDLAL 
Sbjct  394   KSRASKYMTFIYIKIPSVVLCLSYKGKKEKNLEDVHDLVFRLPTLEYRNKTWSWLDLALA  453

Query  2730  LKKDVIKALISHA  2742
             LKKDVIKAL+SH 
Sbjct  454   LKKDVIKALLSHT  466


>CDD:431201 pfam10293, DUF2405, Domain of unknown function (DUF2405).  This 
is a conserved region of a family of proteins conserved in 
fungi. The function is unknown.
Length=152

 Score = 249 bits (638),  Expect = 1e-76, Method: Composition-based stats.
 Identities = 91/158 (58%), Positives = 120/158 (76%), Gaps = 7/158 (4%)

Query  901   AQLIRLHAEAPKLKGVWARIISMNNVKADLRKFKLKQGSNLVEEKSIDVWADFIRIGVPH  960
             A+LIRL+ E+P +KGVWAR++S+ +++ DLR          +EEKSIDV  D IR  +PH
Sbjct  1     AKLIRLYVESPTVKGVWARLLSIKDLRLDLRIK-------SLEEKSIDVSTDSIRFRIPH  53

Query  961   HMIMHRVFDNWVNTAKALKQLHHRFKNRSSEFISARDPEAPKKVPRISLRSKALLFELED  1020
               +++R+ DN + T KA+KQLHHRFK  ++E+I    PE PKK+P+I+L+SK LLFELED
Sbjct  54    KFVVYRIIDNIITTVKAIKQLHHRFKTGTNEYILYPKPEKPKKLPKINLKSKRLLFELED  113

Query  1021  DAFEWKLGCIYRTGLLEQRQRLAREEAFELKVQKIRES  1058
             D FE +LG IYR GL+EQR+RLAREEAFE KV+KIRES
Sbjct  114   DPFEAELGMIYRLGLVEQRERLAREEAFEEKVKKIRES  151


>CDD:402113 pfam10347, Fmp27_GFWDK, RNA pol II promoter Fmp27 protein domain. 
 Fmp27_GFWDK is a conserved domain of a family of proteins 
involved in RNA polymerase II transcription initiation. 
It contains characteristic GFWDK sequence motifs. Some members 
are associated with domain Fmp27_SW (pfam10305) towards the 
N-terminus.
Length=155

 Score = 220 bits (563),  Expect = 2e-66, Method: Composition-based stats.
 Identities = 80/161 (50%), Positives = 102/161 (63%), Gaps = 7/161 (4%)

Query  1250  DYPLDLLHIPALRPGQSPRLSSWSLRTDFVIAEEY-RDYRSSRKVQLELVPSTELSDGTT  1308
             DYPL L+H P   P QSP L +  L+ D VIAE+      S R++ + LVPS    +G  
Sbjct  1     DYPLPLVHFP---PNQSPSLPALHLKGDLVIAEQLVTSEESLRRIFVPLVPSAITENGD-  56

Query  1309  SPPFLIDVWRSVSPVKTYSDPTIEINTSLPTSISWGMSYQPVIQDMMKIIEGFTKTEIDP  1368
                + + V R+++PVK YSD  I+IN+  PT I+WG SYQP IQ +M   + FTK  +DP
Sbjct  57    -SFYSVTVPRTLTPVKFYSDLNIDINSDRPTRITWGKSYQPAIQQVMLAFDNFTKPPVDP  115

Query  1369  SERVGFWDKIRLSFHSRIRVLWKEDGDVHLRLKGSRDPYVV  1409
             S ++GFWDKIRL FH RI   WK  GD HL LKGSRDPY +
Sbjct  116   SPKLGFWDKIRLIFHGRISFNWKN-GDFHLHLKGSRDPYDI  155


>CDD:431207 pfam10305, Fmp27_SW, RNA pol II promoter Fmp27 protein domain. 
 Fmp27_SW is a conserved domain of a family of proteins involved 
in RNA polymerase II transcription initiation. It contains 
characteristic SW and GKG sequence motifs.
Length=101

 Score = 141 bits (359),  Expect = 7e-40, Method: Composition-based stats.
 Identities = 51/100 (51%), Positives = 64/100 (64%), Gaps = 1/100 (1%)

Query  1131  AWLRLQEHNARSWKQKIDAAFRFQGSSIKEIRNLFSGADE-PPDDATVTEKILAIPNRPG  1189
             A  RLQEHN+ SW ++I AA  FQ   IKEIR    G+D+  P D    E IL  P RP 
Sbjct  1     ARERLQEHNSTSWIRRIKAAKAFQSREIKEIRKRLWGSDDYSPLDVDKNENILPYPQRPP  60

Query  1190  IMSALITDLSLVIDKPSFPIEEFPSFLHRLGKGIPLSTQY  1229
             +M  +I DL L +DKPSFP+E+ P FLH +GKG+P  T+Y
Sbjct  61    LMRLIIEDLDLTLDKPSFPLEDLPDFLHDVGKGVPKDTKY  100



Lambda      K        H        a         alpha
   0.317    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3570599130


Query= TCONS_00013192

Length=2913
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431223 pfam10344, Fmp27, Mitochondrial protein from FMP27. Th...  772     0.0  
CDD:431231 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 prote...  692     0.0  
CDD:463055 pfam10351, Apt1, Golgi-body localization protein domai...  615     0.0  
CDD:431201 pfam10293, DUF2405, Domain of unknown function (DUF240...  249     1e-76
CDD:402113 pfam10347, Fmp27_GFWDK, RNA pol II promoter Fmp27 prot...  220     2e-66
CDD:431207 pfam10305, Fmp27_SW, RNA pol II promoter Fmp27 protein...  141     7e-40


>CDD:431223 pfam10344, Fmp27, Mitochondrial protein from FMP27.  This family 
contains mitochondrial FMP27 proteins which in yeasts together 
with SEN1 are long genes that exist in a looped conformation, 
effectively bringing together their promoter and terminator 
regions. Pol-II is located at both ends of FMP27 when 
this gene is transcribed from a GAL1 promoter under induced 
and non-induced conditions. The exact function of the Fmp27 
protein is not certain.
Length=865

 Score = 772 bits (1994),  Expect = 0.0, Method: Composition-based stats.
 Identities = 359/913 (39%), Positives = 502/913 (55%), Gaps = 103/913 (11%)

Query  23   IFAIVRIATGVSIQRIGYFSLRRIAYVPREGIQVELRGLGLSLHPPSFAQPTWLSLRLTE  82
            ++ ++R+ TG+SI R G FSLR I   P++ +++E+R +   LH   FA PTWL +   E
Sbjct  7    LWFLIRLITGISIGRFGPFSLRGITLTPKD-VKIEIRKVRFRLH---FANPTWLRIDGLE  62

Query  83   LKVTVNPSALGKGRNSDTAKADVPEPQSSSDVADTSQDGGESSPARARRSKTWKTLTRMK  142
            L              SD+   +     S                    R KTW +LT  K
Sbjct  63   LV---------DVTISDSKDKEPKSADSKGPQ--------PIDSFSQSRIKTWLSLTPPK  105

Query  143  EQVKRLHRKI-HWLKLVDVVAVNTTINFLEAGQFQIGSLSLAVDTRRKMVDRAKVFRRKK  201
            E +KRLHR +  W+  VD+   NTT++ L+ G  QIGSLSL VD RRKMVDR        
Sbjct  106  ELLKRLHRTLLRWIDQVDIHIFNTTVHDLDVGITQIGSLSLTVDERRKMVDR--------  157

Query  202  DESGELCPAEWIMNVQNVLLAVDGNEPAEVLDHVQVNIHGLLHSDR-DGLRDTSIALKIG  260
                E   AE+I+N++NVL  VDGNE  E+LDH  +N+HG L  D   GLRD +I+LK+G
Sbjct  158  ----ESEKAEFIINLRNVLFTVDGNEA-EILDHCTLNLHGKLSKDLPGGLRDLAISLKLG  212

Query  261  RLHIPYDELATVSQRIKQFRRSRKD-LVVNDTDDEISFADFVEELDRPGSRDDVIVQRVA  319
            RLHIP D+L ++  ++K+ + S+ +  V N+   E+S     EEL+ P  + +  VQ+V 
Sbjct  213  RLHIPLDDLMSLVAQLKKSKESKPEPSVKNEEVPEVSL----EELEEP--KSEKTVQKVE  266

Query  320  DSKEFASSLLRGIREIQLALSFFRLSRIVQPSSAGQKSVYLNVISHEIGVDLHRMDQRSP  379
             S +  SSLLR I EIQ+ +  F L+ I   S     SV L V S E+G +LHR+D++SP
Sbjct  267  SSLDLVSSLLRLISEIQIKVENFGLTDIPFSSKDDLSSVSLYVSSKEVGFNLHRLDKKSP  326

Query  380  AHRMYFQRDDVAHQALLAAISLSVSLDDSSGETDNIVYIPMATTTIKTTLPSKTVGSFDN  439
              +M F  DDV HQALLA  SL VSLDD+S   D I+ IP AT T KT L SK   S D+
Sbjct  327  GFKMLFDPDDVPHQALLALTSLKVSLDDNSHSPDRILEIPSATFTGKTNLLSK--SSDDD  384

Query  440  HNAEERNTNILFANFVVTSPSLDLEPHHLDRLLGLVQT----RASSSRGKKRDN---HRL  492
              AEE N NIL  N  +TSPS+DL+   L  LL L++     ++S S  KK+     H L
Sbjct  385  VTAEEFNNNILELNLTLTSPSIDLDHEQLSLLLSLLKNIKLLKSSPSLKKKKSRRILHSL  444

Query  493  ISRLLPKANIKLSVHEPVVRLVLPINKESAGSDDDYNLLISSISAIALDIDSSHSSEGGV  552
            +SR LPK N+K S+ EPV+R+ LP       S   ++LLISSIS ++ D++SSHSSE  +
Sbjct  445  LSRYLPKVNLKFSIEEPVIRIHLPNP-----SKSKFDLLISSISVLSFDLESSHSSESEL  499

Query  553  HYSLSSVYRVADHKLYYQTPTGVKHNLLTTETLELKVLLNASPEVCVIATGTLNTCSVHM  612
            HYS  +  R++ H+LYYQ P G KHN+L  +++ELKV LN  P + V  +G+LNT S+ +
Sbjct  500  HYSFITYLRLSSHQLYYQNPKGSKHNILKLDSIELKVALNLLPNLKVKLSGSLNTLSLDL  559

Query  613  VNGEVNRGIRQVVEQLRAQMQNRRRASM---------GHQER-------------KPSIL  650
             N E+  GI  VV QLR Q++NR    +                           K  + 
Sbjct  560  SNLEILLGINDVVRQLRRQVRNRLNLGVENEYFNDIYNEFRSRLEESEEQESTPLKEKLF  619

Query  651  RRIPPWLLNFQFEATGLSLEIAG-------------VDSTVSKLSRGVSLQLQSWTAEYR  697
            RR+P WLL+ +FE + LSL++               +D +VS   RGVS++L+  + EY+
Sbjct  620  RRLPSWLLSIKFELSSLSLDLGSRSVLIPKDIYDSTLDDSVSDFIRGVSIKLRKLSFEYK  679

Query  698  AQKAE-PTHISLVRRRTPSHS-TIGDESPFRFPPTSPPRQIQHGAADGRRLAFHARGFEG  755
              K     ++  +RR T S S    D         SPPR+   G +DG  L   + G EG
Sbjct  680  NLKLSLGNNVRSIRRFTLSSSAGESDSDDD-----SPPRESDSGLSDGSTLDSTSSGLEG  734

Query  756  FVIESEDYLEPEPFFSLPRFEVALSTQSDRLGPIFHINSVLKGVYLQYSLYRYYCLGVAV  815
             VIES+D LE EPF SLP F++ +ST SD LGPI H+N  +  +  QYSLYR +C+  A+
Sbjct  735  EVIESDDKLESEPFLSLPVFDIKVSTLSDDLGPILHLNLHIDKIDGQYSLYRLFCVIYAL  794

Query  816  SVIQDAFI--QHPTEAPTQPPFEWHPKDSASSPSVPRPPLQRSELITVDIRATVVQIKTF  873
            S+++  F       + P+    +   + S S            EL+TVD++   V +   
Sbjct  795  SLLKSFFGKPISTIKRPSTK--DEIQELSKSLKKPKFDWKGLKELLTVDVKVKSVAVVVR  852

Query  874  LPADPPMLLQIYG  886
            LP D P+LL+I+G
Sbjct  853  LPNDVPLLLEIFG  865


>CDD:431231 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 protein domain. 
 Fmp27_WPPW is a conserved domain of a family of proteins 
involved in RNA polymerase II transcription initiation. It 
contains characteristic HQR and WPPW sequence motifs. and is 
towards the C-terminal in members which contain Fmp27_SW pfam10305.
Length=480

 Score = 692 bits (1788),  Expect = 0.0, Method: Composition-based stats.
 Identities = 257/527 (49%), Positives = 334/527 (63%), Gaps = 51/527 (10%)

Query  1672  GLKVRLDSLKLDVHQRREQIKTVAKGRLKQTKTSAMRINQGQLDLQAADFRAVSVSIEGT  1731
             GLK ++DS  LD+HQRRE++ T  K   K  K S M+ N+G++DL++AD RAVS S +GT
Sbjct  1     GLKAKVDSFMLDLHQRREKLTTYNKKLNKTKKVSKMKFNEGEIDLESADIRAVSASFKGT  60

Query  1732  NLDDIQKNRDDIISSFQQPVPSV-DLSRFTIPDQNLDWVDMDDFVELDWILPQESNPKTH  1790
             ++++I  +    +SS Q    S  DLSRF IPD ++ W+DMDDFVELDWILP  SNPKT 
Sbjct  61    SVEEILASSLSSLSSDQSSSDSSSDLSRFDIPDNDMSWIDMDDFVELDWILPLSSNPKTK  120

Query  1791  ILPLAFTPRFTYFRQTDHGD-ITPDQTGYSPFGHEPTHDCVMSESNEPRRVQMELIRDRL  1849
             ILPLA++PRFTYFRQTD+GD    D  G SPFG+EP+HDC+M + N+PRRVQ ELI +RL
Sbjct  121   ILPLAYSPRFTYFRQTDYGDKYQGDPKGISPFGNEPSHDCIMGKDNDPRRVQKELIEERL  180

Query  1850  ATVEAQIRNFDRRIGEQELRMAKDVDHHSDLKKEHDDFIRQAESLARRRAFLVTGLRRLE  1909
               +E QI   + ++GE EL+  KD     +LK + ++  ++   L  +  FL T L  LE
Sbjct  181   EELEEQIEEHEEKLGELELKSEKD----EELKDKIEELEKEIHKLKEKLEFLETLLEDLE  236

Query  1910  AQLSREEKTPMDKKPENFASDSSFRLGADSDSTNDGKEADLDGLYSSHNDEYASDFNNRF  1969
               L   E            S+ S    + S S+ D           + + E ASDFNNRF
Sbjct  237   ISLEPSESLSSKS------SELSDTSTSYSFSSMDS---------LASSSESASDFNNRF  281

Query  1970  LIHNMQLKWNNSLRNIILRYIHQVSQRRGFVYYMSRRAVKFILDIVEEQNKNNQRRSKMF  2029
             +IHNMQLKWNNSLRNIILRYIHQVSQRRGFVYYMSR+AVKFI D+VEEQ K+ + +S   
Sbjct  282   IIHNMQLKWNNSLRNIILRYIHQVSQRRGFVYYMSRKAVKFIEDLVEEQEKSKKTKSSES  341

Query  2030  KDSSRRPSNADTDED-SVEDRIEQLLNDTKRFVSAEEQESVDSVTQTQPDSDSSSENISP  2088
               SS   S+ D + +  +E+R E+LL D K                              
Sbjct  342   GSSSTTSSSEDDESNEELEERFEELLRDVKN----------------------------D  373

Query  2089  EFTPQNSYYLRLIAPQIQLQSAKNQKSVLLVAASGMQLKVISIMDKERVSDDVSGLVQRR  2148
             +FT QNSY +RLIAPQIQLQS KN  S +LV A  ++LK++SI DKER+ DDVSGLV+RR
Sbjct  374   DFTAQNSYLVRLIAPQIQLQSEKNPDSCVLVTAKDIELKIVSIDDKERIDDDVSGLVERR  433

Query  2149  FSLDMDGAQFFVATQKNLMN-HLQFYAGNKYGNAPGSAWPPWVTLEA  2194
             F + +D AQFFV  +K+  +  L F++GN YG   GS+WPPW+ LE 
Sbjct  434   FGVLLDDAQFFVFHKKDFSDQSLLFFSGNGYGQEKGSSWPPWLPLEV  480


>CDD:463055 pfam10351, Apt1, Golgi-body localization protein domain.  This 
is the C-terminus of a family of proteins conserved from plants 
to humans. The plant members are localized to the Golgi 
proteins and appear to regulate membrane trafficking, as they 
are required for rapid vesicle accumulation at the tip of 
the pollen tube. The C-terminus probably contains the Golgi 
localization signal and it is well-conserved.
Length=466

 Score = 615 bits (1588),  Expect = 0.0, Method: Composition-based stats.
 Identities = 243/553 (44%), Positives = 315/553 (57%), Gaps = 88/553 (16%)

Query  2208  IIQKTSASLRYDKYNNLRLKYNEEVAKGQSKHVGPDGQETRMDHISVDFPHFRAICDSAE  2267
             ++++TS SLRYDKYN LRLK N+E          P   E+RMD ++VDFP   A  +S++
Sbjct  1     VVERTSMSLRYDKYNPLRLKLNDESV------STPLEDESRMDELTVDFPKLVATANSSQ  54

Query  2268  YYSMYIIVLDLLLYSEPLEKVRNERLERILLTSDFSDLRGAPEMVFKLQSRIRQLEEIKE  2327
             YY++Y IV DLLLYSEP EK R+E+LE+++L SDFSDL G  EMV KLQ RIRQLEEIK 
Sbjct  55    YYALYDIVTDLLLYSEPKEKERSEKLEKLMLASDFSDLEGLDEMVKKLQERIRQLEEIKL  114

Query  2328  HFQINAQNLDKHGWEDRLVLEKDLAQCEDELFFLMKAITTSQ-RRIEPTTSGANGILRWK  2386
             +FQ+    LD  G ED L+LEK+LA+C++ELF LMKAI TSQ R+ E   S  +  LRW 
Sbjct  115   NFQLRDDYLDDEGLEDLLLLEKELAECKEELFLLMKAIKTSQLRKGESKDSSKSSALRWS  174

Query  2387  ISASEVVWHLMMDQCQPLVEFQLRNAEYDRTDNSDGSNHNLVAVERIYGLNLLPDAIYPQ  2446
             ISA E++WHL+ D  +P  +  L N+ YDRTDNSDGSN N + +  + G NLLP+AIYP+
Sbjct  175   ISADEIIWHLLDDDGEPFADLALANSSYDRTDNSDGSNSNRLEIGSLQGFNLLPNAIYPE  234

Query  2447  IIVPYLDQAKNLDEPDENMIRVKWHMLEAVGGIPVLDDFEVSLFPLKIQLERELGQRVFE  2506
             ++ PY D   + ++  + M+RV W ML  VGGIPV++ FEV+L PLKIQLE E G+++ E
Sbjct  235   LLSPYEDPGDSPEDGRKPMLRVFWKMLPPVGGIPVVEHFEVNLQPLKIQLEHETGKKLME  294

Query  2507  YIFPNVRSNGFDGGFSPFMIKNMKPLDVSESEEDNDSPSPPPSAQGASDISTEDLSGPKG  2566
             YIFP   S+  +                S+ ++D+D  S   S+  ++  S+   S    
Sbjct  295   YIFPKRDSDSQENE----------ASVKSDDDDDSDDSSSSSSSSSSTSSSSSSSSSSSS  344

Query  2567  PGAIELRLQPTRSLADETRPRSRHSSYNLKGLGMTAIHKKEQQGSNRLGVSQSDRPATSA  2626
               ++ELR   + S           SS             K     + L  S S+R     
Sbjct  345   SSSLELRSSTSSSS----SSELSSSS----------SSSKSSSEEDSLESSASERA----  386

Query  2627  SSLSKKKSVESMRMLSRQPTDKSIANGSTANVGEDKGKKFTLIPNKSGKSKEAQDDLSQM  2686
                                                                   DDL +M
Sbjct  387   -----------------------------------------------------SDDLEEM  393

Query  2687  MSRASSYMTLAHVKVNDVVLCLSYKGKGEHNLEDIHDFVFRLPVLEYRNKTWSNLDLALR  2746
              SRAS YMT  ++K+  VVLCLSYKGK E NLED+HD VFRLP LEYRNKTWS LDLAL 
Sbjct  394   KSRASKYMTFIYIKIPSVVLCLSYKGKKEKNLEDVHDLVFRLPTLEYRNKTWSWLDLALA  453

Query  2747  LKKDVIKALISHA  2759
             LKKDVIKAL+SH 
Sbjct  454   LKKDVIKALLSHT  466


>CDD:431201 pfam10293, DUF2405, Domain of unknown function (DUF2405).  This 
is a conserved region of a family of proteins conserved in 
fungi. The function is unknown.
Length=152

 Score = 249 bits (638),  Expect = 1e-76, Method: Composition-based stats.
 Identities = 91/158 (58%), Positives = 120/158 (76%), Gaps = 7/158 (4%)

Query  901   AQLIRLHAEAPKLKGVWARIISMNNVKADLRKFKLKQGSNLVEEKSIDVWADFIRIGVPH  960
             A+LIRL+ E+P +KGVWAR++S+ +++ DLR          +EEKSIDV  D IR  +PH
Sbjct  1     AKLIRLYVESPTVKGVWARLLSIKDLRLDLRIK-------SLEEKSIDVSTDSIRFRIPH  53

Query  961   HMIMHRVFDNWVNTAKALKQLHHRFKNRSSEFISARDPEAPKKVPRISLRSKALLFELED  1020
               +++R+ DN + T KA+KQLHHRFK  ++E+I    PE PKK+P+I+L+SK LLFELED
Sbjct  54    KFVVYRIIDNIITTVKAIKQLHHRFKTGTNEYILYPKPEKPKKLPKINLKSKRLLFELED  113

Query  1021  DAFEWKLGCIYRTGLLEQRQRLAREEAFELKVQKIRES  1058
             D FE +LG IYR GL+EQR+RLAREEAFE KV+KIRES
Sbjct  114   DPFEAELGMIYRLGLVEQRERLAREEAFEEKVKKIRES  151


>CDD:402113 pfam10347, Fmp27_GFWDK, RNA pol II promoter Fmp27 protein domain. 
 Fmp27_GFWDK is a conserved domain of a family of proteins 
involved in RNA polymerase II transcription initiation. 
It contains characteristic GFWDK sequence motifs. Some members 
are associated with domain Fmp27_SW (pfam10305) towards the 
N-terminus.
Length=155

 Score = 220 bits (563),  Expect = 2e-66, Method: Composition-based stats.
 Identities = 80/161 (50%), Positives = 102/161 (63%), Gaps = 7/161 (4%)

Query  1250  DYPLDLLHIPALRPGQSPRLSSWSLRTDFVIAEEY-RDYRSSRKVQLELVPSTELSDGTT  1308
             DYPL L+H P   P QSP L +  L+ D VIAE+      S R++ + LVPS    +G  
Sbjct  1     DYPLPLVHFP---PNQSPSLPALHLKGDLVIAEQLVTSEESLRRIFVPLVPSAITENGD-  56

Query  1309  SPPFLIDVWRSVSPVKTYSDPTIEINTSLPTSISWGMSYQPVIQDMMKIIEGFTKTEIDP  1368
                + + V R+++PVK YSD  I+IN+  PT I+WG SYQP IQ +M   + FTK  +DP
Sbjct  57    -SFYSVTVPRTLTPVKFYSDLNIDINSDRPTRITWGKSYQPAIQQVMLAFDNFTKPPVDP  115

Query  1369  SERVGFWDKIRLSFHSRIRVLWKEDGDVHLRLKGSRDPYVV  1409
             S ++GFWDKIRL FH RI   WK  GD HL LKGSRDPY +
Sbjct  116   SPKLGFWDKIRLIFHGRISFNWKN-GDFHLHLKGSRDPYDI  155


>CDD:431207 pfam10305, Fmp27_SW, RNA pol II promoter Fmp27 protein domain. 
 Fmp27_SW is a conserved domain of a family of proteins involved 
in RNA polymerase II transcription initiation. It contains 
characteristic SW and GKG sequence motifs.
Length=101

 Score = 141 bits (359),  Expect = 7e-40, Method: Composition-based stats.
 Identities = 51/100 (51%), Positives = 64/100 (64%), Gaps = 1/100 (1%)

Query  1131  AWLRLQEHNARSWKQKIDAAFRFQGSSIKEIRNLFSGADE-PPDDATVTEKILAIPNRPG  1189
             A  RLQEHN+ SW ++I AA  FQ   IKEIR    G+D+  P D    E IL  P RP 
Sbjct  1     ARERLQEHNSTSWIRRIKAAKAFQSREIKEIRKRLWGSDDYSPLDVDKNENILPYPQRPP  60

Query  1190  IMSALITDLSLVIDKPSFPIEEFPSFLHRLGKGIPLSTQY  1229
             +M  +I DL L +DKPSFP+E+ P FLH +GKG+P  T+Y
Sbjct  61    LMRLIIEDLDLTLDKPSFPLEDLPDFLHDVGKGVPKDTKY  100



Lambda      K        H        a         alpha
   0.317    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3592332100


Query= TCONS_00013191

Length=2917
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431223 pfam10344, Fmp27, Mitochondrial protein from FMP27. Th...  770     0.0  
CDD:431231 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 prote...  692     0.0  
CDD:463055 pfam10351, Apt1, Golgi-body localization protein domai...  615     0.0  
CDD:431201 pfam10293, DUF2405, Domain of unknown function (DUF240...  249     1e-76
CDD:402113 pfam10347, Fmp27_GFWDK, RNA pol II promoter Fmp27 prot...  220     2e-66
CDD:431207 pfam10305, Fmp27_SW, RNA pol II promoter Fmp27 protein...  141     8e-40


>CDD:431223 pfam10344, Fmp27, Mitochondrial protein from FMP27.  This family 
contains mitochondrial FMP27 proteins which in yeasts together 
with SEN1 are long genes that exist in a looped conformation, 
effectively bringing together their promoter and terminator 
regions. Pol-II is located at both ends of FMP27 when 
this gene is transcribed from a GAL1 promoter under induced 
and non-induced conditions. The exact function of the Fmp27 
protein is not certain.
Length=865

 Score = 770 bits (1991),  Expect = 0.0, Method: Composition-based stats.
 Identities = 359/913 (39%), Positives = 502/913 (55%), Gaps = 103/913 (11%)

Query  23   IFAIVRIATGVSIQRIGYFSLRRIAYVPREGIQVELRGLGLSLHPPSFAQPTWLSLRLTE  82
            ++ ++R+ TG+SI R G FSLR I   P++ +++E+R +   LH   FA PTWL +   E
Sbjct  7    LWFLIRLITGISIGRFGPFSLRGITLTPKD-VKIEIRKVRFRLH---FANPTWLRIDGLE  62

Query  83   LKVTVNPSALGKGRNSDTAKADVPEPQSSSDVADTSQDGGESSPARARRSKTWKTLTRMK  142
            L              SD+   +     S                    R KTW +LT  K
Sbjct  63   LV---------DVTISDSKDKEPKSADSKGPQ--------PIDSFSQSRIKTWLSLTPPK  105

Query  143  EQVKRLHRKI-HWLKLVDVVAVNTTINFLEAGQFQIGSLSLAVDTRRKMVDRAKVFRRKK  201
            E +KRLHR +  W+  VD+   NTT++ L+ G  QIGSLSL VD RRKMVDR        
Sbjct  106  ELLKRLHRTLLRWIDQVDIHIFNTTVHDLDVGITQIGSLSLTVDERRKMVDR--------  157

Query  202  DESGELCPAEWIMNVQNVLLAVDGNEPAEVLDHVQVNIHGLLHSDR-DGLRDTSIALKIG  260
                E   AE+I+N++NVL  VDGNE  E+LDH  +N+HG L  D   GLRD +I+LK+G
Sbjct  158  ----ESEKAEFIINLRNVLFTVDGNEA-EILDHCTLNLHGKLSKDLPGGLRDLAISLKLG  212

Query  261  RLHIPYDELATVSQRIKQFRRSRKD-LVVNDTDDEISFADFVEELDRPGSRDDVIVQRVA  319
            RLHIP D+L ++  ++K+ + S+ +  V N+   E+S     EEL+ P  + +  VQ+V 
Sbjct  213  RLHIPLDDLMSLVAQLKKSKESKPEPSVKNEEVPEVSL----EELEEP--KSEKTVQKVE  266

Query  320  DSKEFASSLLRGIREIQLALSFFRLSRIVQPSSAGQKSVYLNVISHEIGVDLHRMDQRSP  379
             S +  SSLLR I EIQ+ +  F L+ I   S     SV L V S E+G +LHR+D++SP
Sbjct  267  SSLDLVSSLLRLISEIQIKVENFGLTDIPFSSKDDLSSVSLYVSSKEVGFNLHRLDKKSP  326

Query  380  AHRMYFQRDDVAHQALLAAISLSVSLDDSSGETDNIVYIPMATTTIKTTLPSKTVGSFDN  439
              +M F  DDV HQALLA  SL VSLDD+S   D I+ IP AT T KT L SK   S D+
Sbjct  327  GFKMLFDPDDVPHQALLALTSLKVSLDDNSHSPDRILEIPSATFTGKTNLLSK--SSDDD  384

Query  440  HNAEERNTNILFANFVVTSPSLDLEPHHLDRLLGLVQT----RASSSRGKKRDN---HRL  492
              AEE N NIL  N  +TSPS+DL+   L  LL L++     ++S S  KK+     H L
Sbjct  385  VTAEEFNNNILELNLTLTSPSIDLDHEQLSLLLSLLKNIKLLKSSPSLKKKKSRRILHSL  444

Query  493  ISRLLPKANIKLSVHEPVVRLVLPINKESAGSDDDYNLLISSISAIALDIDSSHSSEGGV  552
            +SR LPK N+K S+ EPV+R+ LP       S   ++LLISSIS ++ D++SSHSSE  +
Sbjct  445  LSRYLPKVNLKFSIEEPVIRIHLPNP-----SKSKFDLLISSISVLSFDLESSHSSESEL  499

Query  553  HYSLSSVYRVADHKLYYQTPTGVKHNLLTTETLELKVLLNASPEVCVIATGTLNTCSVHM  612
            HYS  +  R++ H+LYYQ P G KHN+L  +++ELKV LN  P + V  +G+LNT S+ +
Sbjct  500  HYSFITYLRLSSHQLYYQNPKGSKHNILKLDSIELKVALNLLPNLKVKLSGSLNTLSLDL  559

Query  613  VNGEVNRGIRQVVEQLRAQMQNRRRASM---------GHQER-------------KPSIL  650
             N E+  GI  VV QLR Q++NR    +                           K  + 
Sbjct  560  SNLEILLGINDVVRQLRRQVRNRLNLGVENEYFNDIYNEFRSRLEESEEQESTPLKEKLF  619

Query  651  RRIPPWLLNFQFEATGLSLEIAG-------------VDSTVSKLSRGVSLQLQSWTAEYR  697
            RR+P WLL+ +FE + LSL++               +D +VS   RGVS++L+  + EY+
Sbjct  620  RRLPSWLLSIKFELSSLSLDLGSRSVLIPKDIYDSTLDDSVSDFIRGVSIKLRKLSFEYK  679

Query  698  AQKAE-PTHISLVRRRTPSHS-TIGDESPFRFPPTSPPRQIQHGAADGRRLAFHARGFEG  755
              K     ++  +RR T S S    D         SPPR+   G +DG  L   + G EG
Sbjct  680  NLKLSLGNNVRSIRRFTLSSSAGESDSDDD-----SPPRESDSGLSDGSTLDSTSSGLEG  734

Query  756  FVIESEDYLEPEPFFSLPRFEVALSTQSDRLGPIFHINSVLKGVYLQYSLYRYYCLGVAV  815
             VIES+D LE EPF SLP F++ +ST SD LGPI H+N  +  +  QYSLYR +C+  A+
Sbjct  735  EVIESDDKLESEPFLSLPVFDIKVSTLSDDLGPILHLNLHIDKIDGQYSLYRLFCVIYAL  794

Query  816  SVIQDAFI--QHPTEAPTQPPFEWHPKDSASSPSVPRPPLQRSELITVDIRATVVQIKTF  873
            S+++  F       + P+    +   + S S            EL+TVD++   V +   
Sbjct  795  SLLKSFFGKPISTIKRPSTK--DEIQELSKSLKKPKFDWKGLKELLTVDVKVKSVAVVVR  852

Query  874  LPADPPMLLQIYG  886
            LP D P+LL+I+G
Sbjct  853  LPNDVPLLLEIFG  865


>CDD:431231 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 protein domain. 
 Fmp27_WPPW is a conserved domain of a family of proteins 
involved in RNA polymerase II transcription initiation. It 
contains characteristic HQR and WPPW sequence motifs. and is 
towards the C-terminal in members which contain Fmp27_SW pfam10305.
Length=480

 Score = 692 bits (1787),  Expect = 0.0, Method: Composition-based stats.
 Identities = 257/527 (49%), Positives = 334/527 (63%), Gaps = 51/527 (10%)

Query  1672  GLKVRLDSLKLDVHQRREQIKTVAKGRLKQTKTSAMRINQGQLDLQAADFRAVSVSIEGT  1731
             GLK ++DS  LD+HQRRE++ T  K   K  K S M+ N+G++DL++AD RAVS S +GT
Sbjct  1     GLKAKVDSFMLDLHQRREKLTTYNKKLNKTKKVSKMKFNEGEIDLESADIRAVSASFKGT  60

Query  1732  NLDDIQKNRDDIISSFQQPVPSV-DLSRFTIPDQNLDWVDMDDFVELDWILPQESNPKTH  1790
             ++++I  +    +SS Q    S  DLSRF IPD ++ W+DMDDFVELDWILP  SNPKT 
Sbjct  61    SVEEILASSLSSLSSDQSSSDSSSDLSRFDIPDNDMSWIDMDDFVELDWILPLSSNPKTK  120

Query  1791  ILPLAFTPRFTYFRQTDHGD-ITPDQTGYSPFGHEPTHDCVMSESNEPRRVQMELIRDRL  1849
             ILPLA++PRFTYFRQTD+GD    D  G SPFG+EP+HDC+M + N+PRRVQ ELI +RL
Sbjct  121   ILPLAYSPRFTYFRQTDYGDKYQGDPKGISPFGNEPSHDCIMGKDNDPRRVQKELIEERL  180

Query  1850  ATVEAQIRNFDRRIGEQELRMAKDVDHHSDLKKEHDDFIRQAESLARRRAFLVTGLRRLE  1909
               +E QI   + ++GE EL+  KD     +LK + ++  ++   L  +  FL T L  LE
Sbjct  181   EELEEQIEEHEEKLGELELKSEKD----EELKDKIEELEKEIHKLKEKLEFLETLLEDLE  236

Query  1910  AQLSREEKTPMDKKPENFASDSSFRLGADSDSTNDGKEADLDGLYSSHNDEYASDFNNRF  1969
               L   E            S+ S    + S S+ D           + + E ASDFNNRF
Sbjct  237   ISLEPSESLSSKS------SELSDTSTSYSFSSMDS---------LASSSESASDFNNRF  281

Query  1970  LIHNMQLKWNNSLRNIILRYIHQVSQRRGFVYYMSRRAVKFILDIVEEQNKNNQRRSKMF  2029
             +IHNMQLKWNNSLRNIILRYIHQVSQRRGFVYYMSR+AVKFI D+VEEQ K+ + +S   
Sbjct  282   IIHNMQLKWNNSLRNIILRYIHQVSQRRGFVYYMSRKAVKFIEDLVEEQEKSKKTKSSES  341

Query  2030  KDSSRRPSNADTDED-SVEDRIEQLLNDTKRFVSAEEQESVDSVTQTQPDSDSSSENISP  2088
               SS   S+ D + +  +E+R E+LL D K                              
Sbjct  342   GSSSTTSSSEDDESNEELEERFEELLRDVKN----------------------------D  373

Query  2089  EFTPQNSYYLRLIAPQIQLQSAKNQKSVLLVAASGMQLKVISIMDKERVSDDVSGLVQRR  2148
             +FT QNSY +RLIAPQIQLQS KN  S +LV A  ++LK++SI DKER+ DDVSGLV+RR
Sbjct  374   DFTAQNSYLVRLIAPQIQLQSEKNPDSCVLVTAKDIELKIVSIDDKERIDDDVSGLVERR  433

Query  2149  FSLDMDGAQFFVATQKNLMN-HLQFYAGNKYGNAPGSAWPPWVTLEA  2194
             F + +D AQFFV  +K+  +  L F++GN YG   GS+WPPW+ LE 
Sbjct  434   FGVLLDDAQFFVFHKKDFSDQSLLFFSGNGYGQEKGSSWPPWLPLEV  480


>CDD:463055 pfam10351, Apt1, Golgi-body localization protein domain.  This 
is the C-terminus of a family of proteins conserved from plants 
to humans. The plant members are localized to the Golgi 
proteins and appear to regulate membrane trafficking, as they 
are required for rapid vesicle accumulation at the tip of 
the pollen tube. The C-terminus probably contains the Golgi 
localization signal and it is well-conserved.
Length=466

 Score = 615 bits (1587),  Expect = 0.0, Method: Composition-based stats.
 Identities = 243/553 (44%), Positives = 315/553 (57%), Gaps = 88/553 (16%)

Query  2208  IIQKTSASLRYDKYNNLRLKYNEEVAKGQSKHVGPDGQETRMDHISVDFPHFRAICDSAE  2267
             ++++TS SLRYDKYN LRLK N+E          P   E+RMD ++VDFP   A  +S++
Sbjct  1     VVERTSMSLRYDKYNPLRLKLNDESV------STPLEDESRMDELTVDFPKLVATANSSQ  54

Query  2268  YYSMYIIVLDLLLYSEPLEKVRNERLERILLTSDFSDLRGAPEMVFKLQSRIRQLEEIKE  2327
             YY++Y IV DLLLYSEP EK R+E+LE+++L SDFSDL G  EMV KLQ RIRQLEEIK 
Sbjct  55    YYALYDIVTDLLLYSEPKEKERSEKLEKLMLASDFSDLEGLDEMVKKLQERIRQLEEIKL  114

Query  2328  HFQINAQNLDKHGWEDRLVLEKDLAQCEDELFFLMKAITTSQ-RRIEPTTSGANGILRWK  2386
             +FQ+    LD  G ED L+LEK+LA+C++ELF LMKAI TSQ R+ E   S  +  LRW 
Sbjct  115   NFQLRDDYLDDEGLEDLLLLEKELAECKEELFLLMKAIKTSQLRKGESKDSSKSSALRWS  174

Query  2387  ISASEVVWHLMMDQCQPLVEFQLRNAEYDRTDNSDGSNHNLVAVERIYGLNLLPDAIYPQ  2446
             ISA E++WHL+ D  +P  +  L N+ YDRTDNSDGSN N + +  + G NLLP+AIYP+
Sbjct  175   ISADEIIWHLLDDDGEPFADLALANSSYDRTDNSDGSNSNRLEIGSLQGFNLLPNAIYPE  234

Query  2447  IIVPYLDQAKNLDEPDENMIRVKWHMLEAVGGIPVLDDFEVSLFPLKIQLERELGQRVFE  2506
             ++ PY D   + ++  + M+RV W ML  VGGIPV++ FEV+L PLKIQLE E G+++ E
Sbjct  235   LLSPYEDPGDSPEDGRKPMLRVFWKMLPPVGGIPVVEHFEVNLQPLKIQLEHETGKKLME  294

Query  2507  YIFPNVRSNGFDGGFSPFMIKNMKPLDVSESEEDNDSPSPPPSAQGASDISTEDLSGPKG  2566
             YIFP   S+  +                S+ ++D+D  S   S+  ++  S+   S    
Sbjct  295   YIFPKRDSDSQENE----------ASVKSDDDDDSDDSSSSSSSSSSTSSSSSSSSSSSS  344

Query  2567  PGAIELRLQPTRSLADETRPRSRHSSYNLKGLGMTAIHKKEQQGSNRLGVSQSDRPATSA  2626
               ++ELR   + S           SS             K     + L  S S+R     
Sbjct  345   SSSLELRSSTSSSS----SSELSSSS----------SSSKSSSEEDSLESSASERA----  386

Query  2627  SSLSKKKSVESMRMLSRQPTDKSIANGSTANVGEDKGKKFTLIPNKSGKSKEAQDDLSQM  2686
                                                                   DDL +M
Sbjct  387   -----------------------------------------------------SDDLEEM  393

Query  2687  MSRASSYMTLAHVKVNDVVLCLSYKGKGEHNLEDIHDFVFRLPVLEYRNKTWSNLDLALR  2746
              SRAS YMT  ++K+  VVLCLSYKGK E NLED+HD VFRLP LEYRNKTWS LDLAL 
Sbjct  394   KSRASKYMTFIYIKIPSVVLCLSYKGKKEKNLEDVHDLVFRLPTLEYRNKTWSWLDLALA  453

Query  2747  LKKDVIKALISHA  2759
             LKKDVIKAL+SH 
Sbjct  454   LKKDVIKALLSHT  466


>CDD:431201 pfam10293, DUF2405, Domain of unknown function (DUF2405).  This 
is a conserved region of a family of proteins conserved in 
fungi. The function is unknown.
Length=152

 Score = 249 bits (638),  Expect = 1e-76, Method: Composition-based stats.
 Identities = 91/158 (58%), Positives = 120/158 (76%), Gaps = 7/158 (4%)

Query  901   AQLIRLHAEAPKLKGVWARIISMNNVKADLRKFKLKQGSNLVEEKSIDVWADFIRIGVPH  960
             A+LIRL+ E+P +KGVWAR++S+ +++ DLR          +EEKSIDV  D IR  +PH
Sbjct  1     AKLIRLYVESPTVKGVWARLLSIKDLRLDLRIK-------SLEEKSIDVSTDSIRFRIPH  53

Query  961   HMIMHRVFDNWVNTAKALKQLHHRFKNRSSEFISARDPEAPKKVPRISLRSKALLFELED  1020
               +++R+ DN + T KA+KQLHHRFK  ++E+I    PE PKK+P+I+L+SK LLFELED
Sbjct  54    KFVVYRIIDNIITTVKAIKQLHHRFKTGTNEYILYPKPEKPKKLPKINLKSKRLLFELED  113

Query  1021  DAFEWKLGCIYRTGLLEQRQRLAREEAFELKVQKIRES  1058
             D FE +LG IYR GL+EQR+RLAREEAFE KV+KIRES
Sbjct  114   DPFEAELGMIYRLGLVEQRERLAREEAFEEKVKKIRES  151


>CDD:402113 pfam10347, Fmp27_GFWDK, RNA pol II promoter Fmp27 protein domain. 
 Fmp27_GFWDK is a conserved domain of a family of proteins 
involved in RNA polymerase II transcription initiation. 
It contains characteristic GFWDK sequence motifs. Some members 
are associated with domain Fmp27_SW (pfam10305) towards the 
N-terminus.
Length=155

 Score = 220 bits (563),  Expect = 2e-66, Method: Composition-based stats.
 Identities = 80/161 (50%), Positives = 102/161 (63%), Gaps = 7/161 (4%)

Query  1250  DYPLDLLHIPALRPGQSPRLSSWSLRTDFVIAEEY-RDYRSSRKVQLELVPSTELSDGTT  1308
             DYPL L+H P   P QSP L +  L+ D VIAE+      S R++ + LVPS    +G  
Sbjct  1     DYPLPLVHFP---PNQSPSLPALHLKGDLVIAEQLVTSEESLRRIFVPLVPSAITENGD-  56

Query  1309  SPPFLIDVWRSVSPVKTYSDPTIEINTSLPTSISWGMSYQPVIQDMMKIIEGFTKTEIDP  1368
                + + V R+++PVK YSD  I+IN+  PT I+WG SYQP IQ +M   + FTK  +DP
Sbjct  57    -SFYSVTVPRTLTPVKFYSDLNIDINSDRPTRITWGKSYQPAIQQVMLAFDNFTKPPVDP  115

Query  1369  SERVGFWDKIRLSFHSRIRVLWKEDGDVHLRLKGSRDPYVV  1409
             S ++GFWDKIRL FH RI   WK  GD HL LKGSRDPY +
Sbjct  116   SPKLGFWDKIRLIFHGRISFNWKN-GDFHLHLKGSRDPYDI  155


>CDD:431207 pfam10305, Fmp27_SW, RNA pol II promoter Fmp27 protein domain. 
 Fmp27_SW is a conserved domain of a family of proteins involved 
in RNA polymerase II transcription initiation. It contains 
characteristic SW and GKG sequence motifs.
Length=101

 Score = 141 bits (359),  Expect = 8e-40, Method: Composition-based stats.
 Identities = 51/100 (51%), Positives = 64/100 (64%), Gaps = 1/100 (1%)

Query  1131  AWLRLQEHNARSWKQKIDAAFRFQGSSIKEIRNLFSGADE-PPDDATVTEKILAIPNRPG  1189
             A  RLQEHN+ SW ++I AA  FQ   IKEIR    G+D+  P D    E IL  P RP 
Sbjct  1     ARERLQEHNSTSWIRRIKAAKAFQSREIKEIRKRLWGSDDYSPLDVDKNENILPYPQRPP  60

Query  1190  IMSALITDLSLVIDKPSFPIEEFPSFLHRLGKGIPLSTQY  1229
             +M  +I DL L +DKPSFP+E+ P FLH +GKG+P  T+Y
Sbjct  61    LMRLIIEDLDLTLDKPSFPLEDLPDFLHDVGKGVPKDTKY  100



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3597445740


Query= TCONS_00013193

Length=2913
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431223 pfam10344, Fmp27, Mitochondrial protein from FMP27. Th...  772     0.0  
CDD:431231 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 prote...  692     0.0  
CDD:463055 pfam10351, Apt1, Golgi-body localization protein domai...  615     0.0  
CDD:431201 pfam10293, DUF2405, Domain of unknown function (DUF240...  249     1e-76
CDD:402113 pfam10347, Fmp27_GFWDK, RNA pol II promoter Fmp27 prot...  220     2e-66
CDD:431207 pfam10305, Fmp27_SW, RNA pol II promoter Fmp27 protein...  141     7e-40


>CDD:431223 pfam10344, Fmp27, Mitochondrial protein from FMP27.  This family 
contains mitochondrial FMP27 proteins which in yeasts together 
with SEN1 are long genes that exist in a looped conformation, 
effectively bringing together their promoter and terminator 
regions. Pol-II is located at both ends of FMP27 when 
this gene is transcribed from a GAL1 promoter under induced 
and non-induced conditions. The exact function of the Fmp27 
protein is not certain.
Length=865

 Score = 772 bits (1994),  Expect = 0.0, Method: Composition-based stats.
 Identities = 359/913 (39%), Positives = 502/913 (55%), Gaps = 103/913 (11%)

Query  23   IFAIVRIATGVSIQRIGYFSLRRIAYVPREGIQVELRGLGLSLHPPSFAQPTWLSLRLTE  82
            ++ ++R+ TG+SI R G FSLR I   P++ +++E+R +   LH   FA PTWL +   E
Sbjct  7    LWFLIRLITGISIGRFGPFSLRGITLTPKD-VKIEIRKVRFRLH---FANPTWLRIDGLE  62

Query  83   LKVTVNPSALGKGRNSDTAKADVPEPQSSSDVADTSQDGGESSPARARRSKTWKTLTRMK  142
            L              SD+   +     S                    R KTW +LT  K
Sbjct  63   LV---------DVTISDSKDKEPKSADSKGPQ--------PIDSFSQSRIKTWLSLTPPK  105

Query  143  EQVKRLHRKI-HWLKLVDVVAVNTTINFLEAGQFQIGSLSLAVDTRRKMVDRAKVFRRKK  201
            E +KRLHR +  W+  VD+   NTT++ L+ G  QIGSLSL VD RRKMVDR        
Sbjct  106  ELLKRLHRTLLRWIDQVDIHIFNTTVHDLDVGITQIGSLSLTVDERRKMVDR--------  157

Query  202  DESGELCPAEWIMNVQNVLLAVDGNEPAEVLDHVQVNIHGLLHSDR-DGLRDTSIALKIG  260
                E   AE+I+N++NVL  VDGNE  E+LDH  +N+HG L  D   GLRD +I+LK+G
Sbjct  158  ----ESEKAEFIINLRNVLFTVDGNEA-EILDHCTLNLHGKLSKDLPGGLRDLAISLKLG  212

Query  261  RLHIPYDELATVSQRIKQFRRSRKD-LVVNDTDDEISFADFVEELDRPGSRDDVIVQRVA  319
            RLHIP D+L ++  ++K+ + S+ +  V N+   E+S     EEL+ P  + +  VQ+V 
Sbjct  213  RLHIPLDDLMSLVAQLKKSKESKPEPSVKNEEVPEVSL----EELEEP--KSEKTVQKVE  266

Query  320  DSKEFASSLLRGIREIQLALSFFRLSRIVQPSSAGQKSVYLNVISHEIGVDLHRMDQRSP  379
             S +  SSLLR I EIQ+ +  F L+ I   S     SV L V S E+G +LHR+D++SP
Sbjct  267  SSLDLVSSLLRLISEIQIKVENFGLTDIPFSSKDDLSSVSLYVSSKEVGFNLHRLDKKSP  326

Query  380  AHRMYFQRDDVAHQALLAAISLSVSLDDSSGETDNIVYIPMATTTIKTTLPSKTVGSFDN  439
              +M F  DDV HQALLA  SL VSLDD+S   D I+ IP AT T KT L SK   S D+
Sbjct  327  GFKMLFDPDDVPHQALLALTSLKVSLDDNSHSPDRILEIPSATFTGKTNLLSK--SSDDD  384

Query  440  HNAEERNTNILFANFVVTSPSLDLEPHHLDRLLGLVQT----RASSSRGKKRDN---HRL  492
              AEE N NIL  N  +TSPS+DL+   L  LL L++     ++S S  KK+     H L
Sbjct  385  VTAEEFNNNILELNLTLTSPSIDLDHEQLSLLLSLLKNIKLLKSSPSLKKKKSRRILHSL  444

Query  493  ISRLLPKANIKLSVHEPVVRLVLPINKESAGSDDDYNLLISSISAIALDIDSSHSSEGGV  552
            +SR LPK N+K S+ EPV+R+ LP       S   ++LLISSIS ++ D++SSHSSE  +
Sbjct  445  LSRYLPKVNLKFSIEEPVIRIHLPNP-----SKSKFDLLISSISVLSFDLESSHSSESEL  499

Query  553  HYSLSSVYRVADHKLYYQTPTGVKHNLLTTETLELKVLLNASPEVCVIATGTLNTCSVHM  612
            HYS  +  R++ H+LYYQ P G KHN+L  +++ELKV LN  P + V  +G+LNT S+ +
Sbjct  500  HYSFITYLRLSSHQLYYQNPKGSKHNILKLDSIELKVALNLLPNLKVKLSGSLNTLSLDL  559

Query  613  VNGEVNRGIRQVVEQLRAQMQNRRRASM---------GHQER-------------KPSIL  650
             N E+  GI  VV QLR Q++NR    +                           K  + 
Sbjct  560  SNLEILLGINDVVRQLRRQVRNRLNLGVENEYFNDIYNEFRSRLEESEEQESTPLKEKLF  619

Query  651  RRIPPWLLNFQFEATGLSLEIAG-------------VDSTVSKLSRGVSLQLQSWTAEYR  697
            RR+P WLL+ +FE + LSL++               +D +VS   RGVS++L+  + EY+
Sbjct  620  RRLPSWLLSIKFELSSLSLDLGSRSVLIPKDIYDSTLDDSVSDFIRGVSIKLRKLSFEYK  679

Query  698  AQKAE-PTHISLVRRRTPSHS-TIGDESPFRFPPTSPPRQIQHGAADGRRLAFHARGFEG  755
              K     ++  +RR T S S    D         SPPR+   G +DG  L   + G EG
Sbjct  680  NLKLSLGNNVRSIRRFTLSSSAGESDSDDD-----SPPRESDSGLSDGSTLDSTSSGLEG  734

Query  756  FVIESEDYLEPEPFFSLPRFEVALSTQSDRLGPIFHINSVLKGVYLQYSLYRYYCLGVAV  815
             VIES+D LE EPF SLP F++ +ST SD LGPI H+N  +  +  QYSLYR +C+  A+
Sbjct  735  EVIESDDKLESEPFLSLPVFDIKVSTLSDDLGPILHLNLHIDKIDGQYSLYRLFCVIYAL  794

Query  816  SVIQDAFI--QHPTEAPTQPPFEWHPKDSASSPSVPRPPLQRSELITVDIRATVVQIKTF  873
            S+++  F       + P+    +   + S S            EL+TVD++   V +   
Sbjct  795  SLLKSFFGKPISTIKRPSTK--DEIQELSKSLKKPKFDWKGLKELLTVDVKVKSVAVVVR  852

Query  874  LPADPPMLLQIYG  886
            LP D P+LL+I+G
Sbjct  853  LPNDVPLLLEIFG  865


>CDD:431231 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 protein domain. 
 Fmp27_WPPW is a conserved domain of a family of proteins 
involved in RNA polymerase II transcription initiation. It 
contains characteristic HQR and WPPW sequence motifs. and is 
towards the C-terminal in members which contain Fmp27_SW pfam10305.
Length=480

 Score = 692 bits (1788),  Expect = 0.0, Method: Composition-based stats.
 Identities = 257/527 (49%), Positives = 334/527 (63%), Gaps = 51/527 (10%)

Query  1672  GLKVRLDSLKLDVHQRREQIKTVAKGRLKQTKTSAMRINQGQLDLQAADFRAVSVSIEGT  1731
             GLK ++DS  LD+HQRRE++ T  K   K  K S M+ N+G++DL++AD RAVS S +GT
Sbjct  1     GLKAKVDSFMLDLHQRREKLTTYNKKLNKTKKVSKMKFNEGEIDLESADIRAVSASFKGT  60

Query  1732  NLDDIQKNRDDIISSFQQPVPSV-DLSRFTIPDQNLDWVDMDDFVELDWILPQESNPKTH  1790
             ++++I  +    +SS Q    S  DLSRF IPD ++ W+DMDDFVELDWILP  SNPKT 
Sbjct  61    SVEEILASSLSSLSSDQSSSDSSSDLSRFDIPDNDMSWIDMDDFVELDWILPLSSNPKTK  120

Query  1791  ILPLAFTPRFTYFRQTDHGD-ITPDQTGYSPFGHEPTHDCVMSESNEPRRVQMELIRDRL  1849
             ILPLA++PRFTYFRQTD+GD    D  G SPFG+EP+HDC+M + N+PRRVQ ELI +RL
Sbjct  121   ILPLAYSPRFTYFRQTDYGDKYQGDPKGISPFGNEPSHDCIMGKDNDPRRVQKELIEERL  180

Query  1850  ATVEAQIRNFDRRIGEQELRMAKDVDHHSDLKKEHDDFIRQAESLARRRAFLVTGLRRLE  1909
               +E QI   + ++GE EL+  KD     +LK + ++  ++   L  +  FL T L  LE
Sbjct  181   EELEEQIEEHEEKLGELELKSEKD----EELKDKIEELEKEIHKLKEKLEFLETLLEDLE  236

Query  1910  AQLSREEKTPMDKKPENFASDSSFRLGADSDSTNDGKEADLDGLYSSHNDEYASDFNNRF  1969
               L   E            S+ S    + S S+ D           + + E ASDFNNRF
Sbjct  237   ISLEPSESLSSKS------SELSDTSTSYSFSSMDS---------LASSSESASDFNNRF  281

Query  1970  LIHNMQLKWNNSLRNIILRYIHQVSQRRGFVYYMSRRAVKFILDIVEEQNKNNQRRSKMF  2029
             +IHNMQLKWNNSLRNIILRYIHQVSQRRGFVYYMSR+AVKFI D+VEEQ K+ + +S   
Sbjct  282   IIHNMQLKWNNSLRNIILRYIHQVSQRRGFVYYMSRKAVKFIEDLVEEQEKSKKTKSSES  341

Query  2030  KDSSRRPSNADTDED-SVEDRIEQLLNDTKRFVSAEEQESVDSVTQTQPDSDSSSENISP  2088
               SS   S+ D + +  +E+R E+LL D K                              
Sbjct  342   GSSSTTSSSEDDESNEELEERFEELLRDVKN----------------------------D  373

Query  2089  EFTPQNSYYLRLIAPQIQLQSAKNQKSVLLVAASGMQLKVISIMDKERVSDDVSGLVQRR  2148
             +FT QNSY +RLIAPQIQLQS KN  S +LV A  ++LK++SI DKER+ DDVSGLV+RR
Sbjct  374   DFTAQNSYLVRLIAPQIQLQSEKNPDSCVLVTAKDIELKIVSIDDKERIDDDVSGLVERR  433

Query  2149  FSLDMDGAQFFVATQKNLMN-HLQFYAGNKYGNAPGSAWPPWVTLEA  2194
             F + +D AQFFV  +K+  +  L F++GN YG   GS+WPPW+ LE 
Sbjct  434   FGVLLDDAQFFVFHKKDFSDQSLLFFSGNGYGQEKGSSWPPWLPLEV  480


>CDD:463055 pfam10351, Apt1, Golgi-body localization protein domain.  This 
is the C-terminus of a family of proteins conserved from plants 
to humans. The plant members are localized to the Golgi 
proteins and appear to regulate membrane trafficking, as they 
are required for rapid vesicle accumulation at the tip of 
the pollen tube. The C-terminus probably contains the Golgi 
localization signal and it is well-conserved.
Length=466

 Score = 615 bits (1588),  Expect = 0.0, Method: Composition-based stats.
 Identities = 243/553 (44%), Positives = 315/553 (57%), Gaps = 88/553 (16%)

Query  2208  IIQKTSASLRYDKYNNLRLKYNEEVAKGQSKHVGPDGQETRMDHISVDFPHFRAICDSAE  2267
             ++++TS SLRYDKYN LRLK N+E          P   E+RMD ++VDFP   A  +S++
Sbjct  1     VVERTSMSLRYDKYNPLRLKLNDESV------STPLEDESRMDELTVDFPKLVATANSSQ  54

Query  2268  YYSMYIIVLDLLLYSEPLEKVRNERLERILLTSDFSDLRGAPEMVFKLQSRIRQLEEIKE  2327
             YY++Y IV DLLLYSEP EK R+E+LE+++L SDFSDL G  EMV KLQ RIRQLEEIK 
Sbjct  55    YYALYDIVTDLLLYSEPKEKERSEKLEKLMLASDFSDLEGLDEMVKKLQERIRQLEEIKL  114

Query  2328  HFQINAQNLDKHGWEDRLVLEKDLAQCEDELFFLMKAITTSQ-RRIEPTTSGANGILRWK  2386
             +FQ+    LD  G ED L+LEK+LA+C++ELF LMKAI TSQ R+ E   S  +  LRW 
Sbjct  115   NFQLRDDYLDDEGLEDLLLLEKELAECKEELFLLMKAIKTSQLRKGESKDSSKSSALRWS  174

Query  2387  ISASEVVWHLMMDQCQPLVEFQLRNAEYDRTDNSDGSNHNLVAVERIYGLNLLPDAIYPQ  2446
             ISA E++WHL+ D  +P  +  L N+ YDRTDNSDGSN N + +  + G NLLP+AIYP+
Sbjct  175   ISADEIIWHLLDDDGEPFADLALANSSYDRTDNSDGSNSNRLEIGSLQGFNLLPNAIYPE  234

Query  2447  IIVPYLDQAKNLDEPDENMIRVKWHMLEAVGGIPVLDDFEVSLFPLKIQLERELGQRVFE  2506
             ++ PY D   + ++  + M+RV W ML  VGGIPV++ FEV+L PLKIQLE E G+++ E
Sbjct  235   LLSPYEDPGDSPEDGRKPMLRVFWKMLPPVGGIPVVEHFEVNLQPLKIQLEHETGKKLME  294

Query  2507  YIFPNVRSNGFDGGFSPFMIKNMKPLDVSESEEDNDSPSPPPSAQGASDISTEDLSGPKG  2566
             YIFP   S+  +                S+ ++D+D  S   S+  ++  S+   S    
Sbjct  295   YIFPKRDSDSQENE----------ASVKSDDDDDSDDSSSSSSSSSSTSSSSSSSSSSSS  344

Query  2567  PGAIELRLQPTRSLADETRPRSRHSSYNLKGLGMTAIHKKEQQGSNRLGVSQSDRPATSA  2626
               ++ELR   + S           SS             K     + L  S S+R     
Sbjct  345   SSSLELRSSTSSSS----SSELSSSS----------SSSKSSSEEDSLESSASERA----  386

Query  2627  SSLSKKKSVESMRMLSRQPTDKSIANGSTANVGEDKGKKFTLIPNKSGKSKEAQDDLSQM  2686
                                                                   DDL +M
Sbjct  387   -----------------------------------------------------SDDLEEM  393

Query  2687  MSRASSYMTLAHVKVNDVVLCLSYKGKGEHNLEDIHDFVFRLPVLEYRNKTWSNLDLALR  2746
              SRAS YMT  ++K+  VVLCLSYKGK E NLED+HD VFRLP LEYRNKTWS LDLAL 
Sbjct  394   KSRASKYMTFIYIKIPSVVLCLSYKGKKEKNLEDVHDLVFRLPTLEYRNKTWSWLDLALA  453

Query  2747  LKKDVIKALISHA  2759
             LKKDVIKAL+SH 
Sbjct  454   LKKDVIKALLSHT  466


>CDD:431201 pfam10293, DUF2405, Domain of unknown function (DUF2405).  This 
is a conserved region of a family of proteins conserved in 
fungi. The function is unknown.
Length=152

 Score = 249 bits (638),  Expect = 1e-76, Method: Composition-based stats.
 Identities = 91/158 (58%), Positives = 120/158 (76%), Gaps = 7/158 (4%)

Query  901   AQLIRLHAEAPKLKGVWARIISMNNVKADLRKFKLKQGSNLVEEKSIDVWADFIRIGVPH  960
             A+LIRL+ E+P +KGVWAR++S+ +++ DLR          +EEKSIDV  D IR  +PH
Sbjct  1     AKLIRLYVESPTVKGVWARLLSIKDLRLDLRIK-------SLEEKSIDVSTDSIRFRIPH  53

Query  961   HMIMHRVFDNWVNTAKALKQLHHRFKNRSSEFISARDPEAPKKVPRISLRSKALLFELED  1020
               +++R+ DN + T KA+KQLHHRFK  ++E+I    PE PKK+P+I+L+SK LLFELED
Sbjct  54    KFVVYRIIDNIITTVKAIKQLHHRFKTGTNEYILYPKPEKPKKLPKINLKSKRLLFELED  113

Query  1021  DAFEWKLGCIYRTGLLEQRQRLAREEAFELKVQKIRES  1058
             D FE +LG IYR GL+EQR+RLAREEAFE KV+KIRES
Sbjct  114   DPFEAELGMIYRLGLVEQRERLAREEAFEEKVKKIRES  151


>CDD:402113 pfam10347, Fmp27_GFWDK, RNA pol II promoter Fmp27 protein domain. 
 Fmp27_GFWDK is a conserved domain of a family of proteins 
involved in RNA polymerase II transcription initiation. 
It contains characteristic GFWDK sequence motifs. Some members 
are associated with domain Fmp27_SW (pfam10305) towards the 
N-terminus.
Length=155

 Score = 220 bits (563),  Expect = 2e-66, Method: Composition-based stats.
 Identities = 80/161 (50%), Positives = 102/161 (63%), Gaps = 7/161 (4%)

Query  1250  DYPLDLLHIPALRPGQSPRLSSWSLRTDFVIAEEY-RDYRSSRKVQLELVPSTELSDGTT  1308
             DYPL L+H P   P QSP L +  L+ D VIAE+      S R++ + LVPS    +G  
Sbjct  1     DYPLPLVHFP---PNQSPSLPALHLKGDLVIAEQLVTSEESLRRIFVPLVPSAITENGD-  56

Query  1309  SPPFLIDVWRSVSPVKTYSDPTIEINTSLPTSISWGMSYQPVIQDMMKIIEGFTKTEIDP  1368
                + + V R+++PVK YSD  I+IN+  PT I+WG SYQP IQ +M   + FTK  +DP
Sbjct  57    -SFYSVTVPRTLTPVKFYSDLNIDINSDRPTRITWGKSYQPAIQQVMLAFDNFTKPPVDP  115

Query  1369  SERVGFWDKIRLSFHSRIRVLWKEDGDVHLRLKGSRDPYVV  1409
             S ++GFWDKIRL FH RI   WK  GD HL LKGSRDPY +
Sbjct  116   SPKLGFWDKIRLIFHGRISFNWKN-GDFHLHLKGSRDPYDI  155


>CDD:431207 pfam10305, Fmp27_SW, RNA pol II promoter Fmp27 protein domain. 
 Fmp27_SW is a conserved domain of a family of proteins involved 
in RNA polymerase II transcription initiation. It contains 
characteristic SW and GKG sequence motifs.
Length=101

 Score = 141 bits (359),  Expect = 7e-40, Method: Composition-based stats.
 Identities = 51/100 (51%), Positives = 64/100 (64%), Gaps = 1/100 (1%)

Query  1131  AWLRLQEHNARSWKQKIDAAFRFQGSSIKEIRNLFSGADE-PPDDATVTEKILAIPNRPG  1189
             A  RLQEHN+ SW ++I AA  FQ   IKEIR    G+D+  P D    E IL  P RP 
Sbjct  1     ARERLQEHNSTSWIRRIKAAKAFQSREIKEIRKRLWGSDDYSPLDVDKNENILPYPQRPP  60

Query  1190  IMSALITDLSLVIDKPSFPIEEFPSFLHRLGKGIPLSTQY  1229
             +M  +I DL L +DKPSFP+E+ P FLH +GKG+P  T+Y
Sbjct  61    LMRLIIEDLDLTLDKPSFPLEDLPDFLHDVGKGVPKDTKY  100



Lambda      K        H        a         alpha
   0.317    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3592332100


Query= TCONS_00013194

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00013197

Length=2019
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466373 pfam20222, DUF6581, Family of unknown function (DUF658...  415     4e-131
CDD:367858 pfam04182, B-block_TFIIIC, B-block binding subunit of ...  100     6e-26 


>CDD:466373 pfam20222, DUF6581, Family of unknown function (DUF6581).  This 
entry represents a putative domain found in the yeast Transcription 
factor tau 138 kDa subunit.
Length=404

 Score = 415 bits (1068),  Expect = 4e-131, Method: Composition-based stats.
 Identities = 176/431 (41%), Positives = 258/431 (60%), Gaps = 30/431 (7%)

Query  1541  NRALQHLPRLITERILTAIVVVRALAGGYEGRIVDWQLVCQSFPNQDPKMIQERGKNILS  1600
              RAL  L +   ER++ A+V+VR LAGG E  I DW LV + FP+     +++R K I  
Sbjct  1     RRALNKLTKDDEERLIRAVVIVRTLAGGLEKSI-DWGLVAKLFPDYSLDFLRKRWKRIRE  59

Query  1601  R--NRLQVAKMQSDFQERFIVAYANGQVPPINYEDLEGYDWERVVDWAQTELDIPKSEKL  1658
             R   R  + K+   FQE F+ AY  G++PPI+Y+DLE YDW ++VDWA+ ELD P+S   
Sbjct  60    RKGGRSYIEKLTEKFQEIFLEAYEKGELPPIDYDDLENYDWPKLVDWARKELDSPESSDP  119

Query  1659  PDLPATKDQFDSVFELREEAPVT-LDELYQNTHGVTVNRRRALYAGVPFAIPVPAKPTQP  1717
              DLPA++++ D  +EL EE PV+   ELY +    ++ +R    A  PF  P+     + 
Sbjct  120   VDLPASREELDKKYELVEEEPVSDWRELYFHEA-SSMVKREEALASKPFTYPLEPIKEED  178

Query  1718  TARQAELARLEVAKTWVRANIIAPEESYRPAEARQALTNFGGRLVDDALQSLTTERVVSQ  1777
                  E   LE+AK+W+RA ++ PEE+Y P  A++ L++ G  L+D AL+ L  E+V+  
Sbjct  179   -----EEDDLELAKSWIRAILLTPEETYDPEAAKKKLSSLGEELLDKALKELLREKVIYL  233

Query  1778  GNRGRITPGRNYDITEFFLHMLGRRRNIEVTQLRRAARFKTRTLDPALQSTGSFAINYHA  1837
               +GR  PGRN+++T+ FL+ L   R I+ +  R AA FK   LD A +      ++Y  
Sbjct  234   SKKGRRLPGRNFELTDKFLNAL--DRPIDESFFREAAAFKETLLDEAFRK--GLVLSYEI  289

Query  1838  EDGDILALINLAAERRIVLKPKDPPRDKFGLTDGGYLTRQIDKDKLRFVVQVQPVEASYI  1897
             +DG++ AL+NL A  R+ L P D PR  FGLT GGY TR+IDK+KL F + + P + SY+
Sbjct  290   DDGEMAALLNLLASGRVRLVPVD-PRIPFGLTPGGYETRKIDKEKLEFDIVIVPTDYSYV  348

Query  1898  YGNPIGAKVANTPPPCPPRAAISGGEFVPEKIPLWFDIHGNFVRVLWEFAVAAVVGIVAV  1957
             YG  +  K++  PPP                IPLW DIHGN    LW+  ++AV+G++A 
Sbjct  349   YG-ELLKKLSPVPPPLG--------------IPLWIDIHGNVNEELWKKVLSAVLGLIAF  393

Query  1958  RPGVSAKGVAS  1968
             RPG++A+G+AS
Sbjct  394   RPGITAEGLAS  404


>CDD:367858 pfam04182, B-block_TFIIIC, B-block binding subunit of TFIIIC. 
 Yeast transcription factor IIIC (TFIIIC) is a multi-subunit 
protein complex that interacts with two control elements of 
class III promoters called the A and B blocks. This family 
represents the subunit within TFIIIC involved in B-block binding.
Length=75

 Score = 100 bits (252),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 35/73 (48%), Positives = 45/73 (62%), Gaps = 4/73 (5%)

Query  223  PLEFALLSIIASHKSNGIFQTDLVKLSGQDKRSVPKRTDVLQEKGYIEKRAI----QIKS  278
             L+F LL  IA  + NGI Q+DL KL+GQD RS+  R   L++KG I K+ I      KS
Sbjct  2    ALQFCLLEEIARSRYNGITQSDLAKLTGQDPRSLHYRLKKLEKKGLIVKQQIIQSNTGKS  61

Query  279  VRTSLCVLRRFSK  291
            + TSL VL RF+ 
Sbjct  62   IHTSLLVLPRFAI  74



Lambda      K        H        a         alpha
   0.317    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2527321748


Query= TCONS_00013198

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase. This entry...  154     6e-46


>CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase.  This entry refers 
to the DHHC domain, found in DHHC proteins which are palmitoyltransferases. 
Palmitoylation or, more specifically S-acylation, 
plays important roles in the regulation of protein localization, 
stability, and activity. It is a post-translational 
protein modification that involves the attachment of palmitic 
acid to Cys residues through a thioester linkage. Protein 
acyltransferases (PATs), also known as palmitoyltransferases, 
catalyze this reaction by transferring the palmitoyl 
group from palmitoyl-CoA to the thiol group of Cys residues. 
They are characterized by the presence of a 50-residue-long 
domain called the DHHC domain, which in most but not all cases 
is also cysteine-rich and gets its name from a highly conserved 
DHHC signature tetrapeptide (Asp-His-His-Cys). The Cys 
residue within the DHHC domain forms a stable acyl intermediate 
and transfers the acyl chain to the Cys residues of a 
target protein. Some proteins containing a DHHC domain include 
Drosophila DNZ1 protein, Mouse Abl-philin 2 (Aph2) protein, 
Mammalian ZDHHC9, Yeast ankyrin repeat-containing protein 
AKR1, Yeast Erf2 protein, and Arabidopsis thaliana tip growth 
defective 1.
Length=132

 Score = 154 bits (392),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 44/126 (35%), Positives = 64/126 (51%), Gaps = 2/126 (2%)

Query  70   TGGSRYCKKCQCPKPDRAHHCSTCKRCVLKMDHHCPWLATCVGLYNYKAFLLFLIYTSLF  129
                +YC  C   KP R+ HC  C RCVL+ DHHCPWL  C+G  N+K F+LFL+Y +L+
Sbjct  2    FDELKYCSTCNIYKPPRSKHCRVCNRCVLRFDHHCPWLNNCIGKRNHKYFILFLLYLTLY  61

Query  130  CWVDFAVSATWIWTEV--FNDAPYLETMLPVNVVLLAILGGIIGLVLTGFTAWHISLAVR  187
              +   +S  ++   +       +L   L    ++L IL     L L     +H+ L  R
Sbjct  62   LILYLVLSLYYLVKLIESSTLFFFLILFLFSISIILLILSLFFLLFLGILLFFHLYLISR  121

Query  188  GMTTIE  193
             +TT E
Sbjct  122  NLTTYE  127



Lambda      K        H        a         alpha
   0.319    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0794    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00018681

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400745 pfam08568, Kinetochor_Ybp2, Uncharacterized protein fa...  488     3e-166


>CDD:400745 pfam08568, Kinetochor_Ybp2, Uncharacterized protein family, YAP/Alf4/glomulin. 
 This entry contains a number of protein families 
with apparently unrelated functions. These include the 
YAP binding proteins of yeasts. These are stress response 
and redox homeostasis proteins, induced by hydrogen peroxide 
or induced in response to alkylating agent methyl methanesulphonate 
(MMS). The family includes Aberrant root formation 
protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress), 
which is required for the initiation of lateral roots independent 
from auxin signalling. It may also function in maintaining 
the pericycle in the mitotically competent state needed 
for lateral root formation. The family includes glomulin (FAP68), 
which is essential for normal development of the vasculature 
and may represent a naturally occurring ligand of the 
immunophilins FKBP59 and FKBP12.
Length=624

 Score = 488 bits (1259),  Expect = 3e-166, Method: Composition-based stats.
 Identities = 243/695 (35%), Positives = 315/695 (45%), Gaps = 132/695 (19%)

Query  1    MAEEEDPLIKALPPATDYLTYLTLLEYQLT----------PARLPTLHKLLQD-ETLTTN  49
            + E  DPL +  PPATDYLTYLTLLE  L              LP L +LLQD   LT  
Sbjct  3    VEELLDPLAEEAPPATDYLTYLTLLELYLEEVNEYSIDEKEELLPELLELLQDNPDLTYE  62

Query  50   IGWDLVQLLLPMLPQS-----------LECLQDVARLGNPREVILRVSDALMRLQPDEDD  98
            IGWDL +LLL  LP S           +EC +D+ARLGNP+E++L+V + L  L P++D+
Sbjct  63   IGWDLPKLLLKFLPASNVNDDPLVKLIMECFEDLARLGNPKELLLKVCELLSELSPEDDE  122

Query  99   SNAHTPPGEFDAPETQSKSTTSYNDRLGEATTTPPRYVVQFNSLVAMLSILHSRIQTKSP  158
             +                     +D+  +     P  + +   L+ +LS L  RIQTK P
Sbjct  123  DSD--------------------DDKESKKEIEEPFEL-KQYCLLELLSSLLKRIQTKYP  161

Query  159  SRFLATSLQAVLEAYTTLPTSETTIALLEF-LRDVSPTKRPAPPPRSASESGVLRVSAAS  217
            SRFLA +L A+L A T  PT E T+   EF LR V   KRP  PPR            AS
Sbjct  162  SRFLAMALSAILNAVTNNPT-EETLEDDEFILRRVYTFKRPYIPPR-----------PAS  209

Query  218  APDPEAEVQSPSPKTNDEQALVKRFLQFGLIELLKSYLLGLAGPMDPGMSWAIRLHEKLH  277
            APDPEA  +  S    DE AL ++ LQ  L +LLKSYLL  +   DPG          L 
Sbjct  210  APDPEASSEELSKIKEDESALQRKLLQSFLTQLLKSYLLSFSVKWDPG----------LL  259

Query  278  PETRLPGKDSQTDVYCSNNYLKDRDMILAKITAL--SSDFGLSDDQLLAIALQPAK----  331
            PE   PG+    D +  +  L +RD IL ++ AL  S D  LSD+ LL    +       
Sbjct  260  PELIRPGRLLLEDYFEVDEELSERDTILGRLVALATSFDIDLSDEFLLFCIKESRPLYES  319

Query  332  -----NQPAPLDFDEPPQNVE--------------DIPLERHGSLLLLAGRAAMAELFSS  372
                 ++     F+E P++ E              +IPL+RHG LLLL  R    ELFS 
Sbjct  320  LPKDEDEDKAELFEEVPKDYEASYTYSLFKIAIEKEIPLDRHGILLLLTIRYFENELFS-  378

Query  373  GQVPPIPVFPDLARIYSNFIGPVKSPDDVAFGQPQPLLDSLLTLTTLSLRNNAI-GEPTD  431
                P   FPD   +Y  F GP        F Q + L DSLL    ++L +N+I      
Sbjct  379  ---LPKISFPDAIYLYLRFTGPS---LYSPFFQNKGLEDSLLYWLWVALTSNSIELAELP  432

Query  432  DKEFYDLLLAVTACTTRQ----TYSIIRQLPEVIVHSHPSQSTRFKVIRRVLEDEHLLAV  487
            DK F   L A+   T RQ       I   L   ++H HP    RFK IR  LE+    + 
Sbjct  433  DKVFKVFLQALLLITCRQPNPELRYITLTLLTRLLHLHPED-VRFKFIRDTLENCPYESA  491

Query  488  KDRAVGWLKKEILAASAQSSNNA------TNIFLNPHYFSVLFPLLFNSADLLLNVSTDI  541
            K  A+G LK  +L A   S ++        NIFL PH  S L  L+ NS D LLN     
Sbjct  492  KGSAIGILKDLMLKALKSSQSSELQLPPRPNIFLTPHRLSELLSLVLNSPDGLLND----  547

Query  542  AASWIQFSQTLAPSIHAALSLYYILLQSSTLRTQLQLEKTYPYFRSRFLEPLKTLCHAFE  601
              S     Q     I A L+L Y L +   LR       T P F   +LEPLKTL ++ E
Sbjct  548  -ESNKTDLQQNLDLILAYLNLLYYLKKKWDLR------VTLPVFLKEYLEPLKTLLNSSE  600

Query  602  TEMTQNGGDGRIEAAVGEEMSQIGMARSVGLISHV  636
             E+              E++  I       ++S  
Sbjct  601  AELEAEKE-------PEEKLIDIA----NDVLSSA  624



Lambda      K        H        a         alpha
   0.316    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 858327780


Query= TCONS_00013200

Length=597


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 754686140


Query= TCONS_00013199

Length=310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400745 pfam08568, Kinetochor_Ybp2, Uncharacterized protein fa...  187     4e-55


>CDD:400745 pfam08568, Kinetochor_Ybp2, Uncharacterized protein family, YAP/Alf4/glomulin. 
 This entry contains a number of protein families 
with apparently unrelated functions. These include the 
YAP binding proteins of yeasts. These are stress response 
and redox homeostasis proteins, induced by hydrogen peroxide 
or induced in response to alkylating agent methyl methanesulphonate 
(MMS). The family includes Aberrant root formation 
protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress), 
which is required for the initiation of lateral roots independent 
from auxin signalling. It may also function in maintaining 
the pericycle in the mitotically competent state needed 
for lateral root formation. The family includes glomulin (FAP68), 
which is essential for normal development of the vasculature 
and may represent a naturally occurring ligand of the 
immunophilins FKBP59 and FKBP12.
Length=624

 Score = 187 bits (476),  Expect = 4e-55, Method: Composition-based stats.
 Identities = 90/282 (32%), Positives = 116/282 (41%), Gaps = 41/282 (15%)

Query  1    MAELFSSGQVPPIPVFPDLARIYSNFIGPVKSPDDVAFGQPQPLLDSLLTLTTLSLRNNA  60
              ELFS     P   FPD   +Y  F GP        F Q + L DSLL    ++L +N+
Sbjct  373  ENELFS----LPKISFPDAIYLYLRFTGPS---LYSPFFQNKGLEDSLLYWLWVALTSNS  425

Query  61   I-GEPTDDKEFYDLLLAVTACTTRQ----TYSIIRQLPEVIVHSHPSQSTRFKVIRRVLE  115
            I      DK F   L A+   T RQ       I   L   ++H HP    RFK IR  LE
Sbjct  426  IELAELPDKVFKVFLQALLLITCRQPNPELRYITLTLLTRLLHLHPED-VRFKFIRDTLE  484

Query  116  DEHLLAVKDRAVGWLKKEILAASAQSSNNA------TNIFLNPHYFSVLFPLLFNSADLL  169
            +    + K  A+G LK  +L A   S ++        NIFL PH  S L  L+ NS D L
Sbjct  485  NCPYESAKGSAIGILKDLMLKALKSSQSSELQLPPRPNIFLTPHRLSELLSLVLNSPDGL  544

Query  170  LNVSTDIAASWIQFSQTLAPSIHAALSLYYILLQSSTLRTQLQLEKTYPYFRSRFLEPLK  229
            LN       S     Q     I A L+L Y L +   LR       T P F   +LEPLK
Sbjct  545  LND-----ESNKTDLQQNLDLILAYLNLLYYLKKKWDLR------VTLPVFLKEYLEPLK  593

Query  230  TLCHAFETEMTQNGGDGRIEAAVGEEMSQIGMARSVGLISHV  271
            TL ++ E E+              E++  I       ++S  
Sbjct  594  TLLNSSEAELEAEKE-------PEEKLIDIA----NDVLSSA  624



Lambda      K        H        a         alpha
   0.319    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 355153814


Query= TCONS_00013201

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal dom...  128     2e-40


>CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal domain.  Cyanate 
lyase (also known as cyanase) EC:4.2.1.104 is responsible 
for the hydrolysis of cyanate, allowing organisms that 
possess the enzyme to overcome the toxicity of environmental 
cyanate. This enzyme is composed of two domains, an N-terminal 
helix-turn-helix and this structurally unique C-terminal 
domain.
Length=64

 Score = 128 bits (325),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 1/65 (2%)

Query  95   EPLIYRLYEIVQNYGYAYKAVLNEKFGDGIMSAISFSTKVEKETDADGNNWAVITLRGKW  154
            +PLIYRLYEIVQ YG A K +++EKFGDGIMSAI FS  VEK  D  G +  VITL GK+
Sbjct  1    DPLIYRLYEIVQVYGPAIKELIHEKFGDGIMSAIDFSMDVEKVEDPKG-DRVVITLNGKF  59

Query  155  LPFSR  159
            LP+ +
Sbjct  60   LPYKK  64



Lambda      K        H        a         alpha
   0.316    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00013202

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal dom...  128     2e-40


>CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal domain.  Cyanate 
lyase (also known as cyanase) EC:4.2.1.104 is responsible 
for the hydrolysis of cyanate, allowing organisms that 
possess the enzyme to overcome the toxicity of environmental 
cyanate. This enzyme is composed of two domains, an N-terminal 
helix-turn-helix and this structurally unique C-terminal 
domain.
Length=64

 Score = 128 bits (325),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 1/65 (2%)

Query  95   EPLIYRLYEIVQNYGYAYKAVLNEKFGDGIMSAISFSTKVEKETDADGNNWAVITLRGKW  154
            +PLIYRLYEIVQ YG A K +++EKFGDGIMSAI FS  VEK  D  G +  VITL GK+
Sbjct  1    DPLIYRLYEIVQVYGPAIKELIHEKFGDGIMSAIDFSMDVEKVEDPKG-DRVVITLNGKF  59

Query  155  LPFSR  159
            LP+ +
Sbjct  60   LPYKK  64



Lambda      K        H        a         alpha
   0.316    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00013204

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal dom...  119     6e-37


>CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal domain.  Cyanate 
lyase (also known as cyanase) EC:4.2.1.104 is responsible 
for the hydrolysis of cyanate, allowing organisms that 
possess the enzyme to overcome the toxicity of environmental 
cyanate. This enzyme is composed of two domains, an N-terminal 
helix-turn-helix and this structurally unique C-terminal 
domain.
Length=64

 Score = 119 bits (301),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 39/60 (65%), Positives = 45/60 (75%), Gaps = 1/60 (2%)

Query  95   EPLIYRLYEIVQNYGYAYKAVLNEKFGDGIMSAISFSTKVEKETDADGNNWAVITLRGKW  154
            +PLIYRLYEIVQ YG A K +++EKFGDGIMSAI FS  VEK  D  G +  VITL GK+
Sbjct  1    DPLIYRLYEIVQVYGPAIKELIHEKFGDGIMSAIDFSMDVEKVEDPKG-DRVVITLNGKF  59



Lambda      K        H        a         alpha
   0.314    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00013203

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal dom...  128     2e-40


>CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal domain.  Cyanate 
lyase (also known as cyanase) EC:4.2.1.104 is responsible 
for the hydrolysis of cyanate, allowing organisms that 
possess the enzyme to overcome the toxicity of environmental 
cyanate. This enzyme is composed of two domains, an N-terminal 
helix-turn-helix and this structurally unique C-terminal 
domain.
Length=64

 Score = 128 bits (325),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 1/65 (2%)

Query  95   EPLIYRLYEIVQNYGYAYKAVLNEKFGDGIMSAISFSTKVEKETDADGNNWAVITLRGKW  154
            +PLIYRLYEIVQ YG A K +++EKFGDGIMSAI FS  VEK  D  G +  VITL GK+
Sbjct  1    DPLIYRLYEIVQVYGPAIKELIHEKFGDGIMSAIDFSMDVEKVEDPKG-DRVVITLNGKF  59

Query  155  LPFSR  159
            LP+ +
Sbjct  60   LPYKK  64



Lambda      K        H        a         alpha
   0.316    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00018683

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal dom...  128     2e-40


>CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal domain.  Cyanate 
lyase (also known as cyanase) EC:4.2.1.104 is responsible 
for the hydrolysis of cyanate, allowing organisms that 
possess the enzyme to overcome the toxicity of environmental 
cyanate. This enzyme is composed of two domains, an N-terminal 
helix-turn-helix and this structurally unique C-terminal 
domain.
Length=64

 Score = 128 bits (325),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 1/65 (2%)

Query  95   EPLIYRLYEIVQNYGYAYKAVLNEKFGDGIMSAISFSTKVEKETDADGNNWAVITLRGKW  154
            +PLIYRLYEIVQ YG A K +++EKFGDGIMSAI FS  VEK  D  G +  VITL GK+
Sbjct  1    DPLIYRLYEIVQVYGPAIKELIHEKFGDGIMSAIDFSMDVEKVEDPKG-DRVVITLNGKF  59

Query  155  LPFSR  159
            LP+ +
Sbjct  60   LPYKK  64



Lambda      K        H        a         alpha
   0.316    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00018682

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal dom...  128     2e-40


>CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal domain.  Cyanate 
lyase (also known as cyanase) EC:4.2.1.104 is responsible 
for the hydrolysis of cyanate, allowing organisms that 
possess the enzyme to overcome the toxicity of environmental 
cyanate. This enzyme is composed of two domains, an N-terminal 
helix-turn-helix and this structurally unique C-terminal 
domain.
Length=64

 Score = 128 bits (325),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 1/65 (2%)

Query  95   EPLIYRLYEIVQNYGYAYKAVLNEKFGDGIMSAISFSTKVEKETDADGNNWAVITLRGKW  154
            +PLIYRLYEIVQ YG A K +++EKFGDGIMSAI FS  VEK  D  G +  VITL GK+
Sbjct  1    DPLIYRLYEIVQVYGPAIKELIHEKFGDGIMSAIDFSMDVEKVEDPKG-DRVVITLNGKF  59

Query  155  LPFSR  159
            LP+ +
Sbjct  60   LPYKK  64



Lambda      K        H        a         alpha
   0.316    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00013206

Length=222


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00013209

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal dom...  128     2e-40


>CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal domain.  Cyanate 
lyase (also known as cyanase) EC:4.2.1.104 is responsible 
for the hydrolysis of cyanate, allowing organisms that 
possess the enzyme to overcome the toxicity of environmental 
cyanate. This enzyme is composed of two domains, an N-terminal 
helix-turn-helix and this structurally unique C-terminal 
domain.
Length=64

 Score = 128 bits (325),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 1/65 (2%)

Query  95   EPLIYRLYEIVQNYGYAYKAVLNEKFGDGIMSAISFSTKVEKETDADGNNWAVITLRGKW  154
            +PLIYRLYEIVQ YG A K +++EKFGDGIMSAI FS  VEK  D  G +  VITL GK+
Sbjct  1    DPLIYRLYEIVQVYGPAIKELIHEKFGDGIMSAIDFSMDVEKVEDPKG-DRVVITLNGKF  59

Query  155  LPFSR  159
            LP+ +
Sbjct  60   LPYKK  64



Lambda      K        H        a         alpha
   0.316    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00013208

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal dom...  128     2e-40


>CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal domain.  Cyanate 
lyase (also known as cyanase) EC:4.2.1.104 is responsible 
for the hydrolysis of cyanate, allowing organisms that 
possess the enzyme to overcome the toxicity of environmental 
cyanate. This enzyme is composed of two domains, an N-terminal 
helix-turn-helix and this structurally unique C-terminal 
domain.
Length=64

 Score = 128 bits (325),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 1/65 (2%)

Query  95   EPLIYRLYEIVQNYGYAYKAVLNEKFGDGIMSAISFSTKVEKETDADGNNWAVITLRGKW  154
            +PLIYRLYEIVQ YG A K +++EKFGDGIMSAI FS  VEK  D  G +  VITL GK+
Sbjct  1    DPLIYRLYEIVQVYGPAIKELIHEKFGDGIMSAIDFSMDVEKVEDPKG-DRVVITLNGKF  59

Query  155  LPFSR  159
            LP+ +
Sbjct  60   LPYKK  64



Lambda      K        H        a         alpha
   0.316    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00013207

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal dom...  119     6e-37


>CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal domain.  Cyanate 
lyase (also known as cyanase) EC:4.2.1.104 is responsible 
for the hydrolysis of cyanate, allowing organisms that 
possess the enzyme to overcome the toxicity of environmental 
cyanate. This enzyme is composed of two domains, an N-terminal 
helix-turn-helix and this structurally unique C-terminal 
domain.
Length=64

 Score = 119 bits (301),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 39/60 (65%), Positives = 45/60 (75%), Gaps = 1/60 (2%)

Query  95   EPLIYRLYEIVQNYGYAYKAVLNEKFGDGIMSAISFSTKVEKETDADGNNWAVITLRGKW  154
            +PLIYRLYEIVQ YG A K +++EKFGDGIMSAI FS  VEK  D  G +  VITL GK+
Sbjct  1    DPLIYRLYEIVQVYGPAIKELIHEKFGDGIMSAIDFSMDVEKVEDPKG-DRVVITLNGKF  59



Lambda      K        H        a         alpha
   0.314    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00018684

Length=287


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00013210

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal dom...  128     2e-40


>CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal domain.  Cyanate 
lyase (also known as cyanase) EC:4.2.1.104 is responsible 
for the hydrolysis of cyanate, allowing organisms that 
possess the enzyme to overcome the toxicity of environmental 
cyanate. This enzyme is composed of two domains, an N-terminal 
helix-turn-helix and this structurally unique C-terminal 
domain.
Length=64

 Score = 128 bits (325),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 1/65 (2%)

Query  95   EPLIYRLYEIVQNYGYAYKAVLNEKFGDGIMSAISFSTKVEKETDADGNNWAVITLRGKW  154
            +PLIYRLYEIVQ YG A K +++EKFGDGIMSAI FS  VEK  D  G +  VITL GK+
Sbjct  1    DPLIYRLYEIVQVYGPAIKELIHEKFGDGIMSAIDFSMDVEKVEDPKG-DRVVITLNGKF  59

Query  155  LPFSR  159
            LP+ +
Sbjct  60   LPYKK  64



Lambda      K        H        a         alpha
   0.316    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00018685

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal dom...  119     6e-37


>CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal domain.  Cyanate 
lyase (also known as cyanase) EC:4.2.1.104 is responsible 
for the hydrolysis of cyanate, allowing organisms that 
possess the enzyme to overcome the toxicity of environmental 
cyanate. This enzyme is composed of two domains, an N-terminal 
helix-turn-helix and this structurally unique C-terminal 
domain.
Length=64

 Score = 119 bits (301),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 39/60 (65%), Positives = 45/60 (75%), Gaps = 1/60 (2%)

Query  95   EPLIYRLYEIVQNYGYAYKAVLNEKFGDGIMSAISFSTKVEKETDADGNNWAVITLRGKW  154
            +PLIYRLYEIVQ YG A K +++EKFGDGIMSAI FS  VEK  D  G +  VITL GK+
Sbjct  1    DPLIYRLYEIVQVYGPAIKELIHEKFGDGIMSAIDFSMDVEKVEDPKG-DRVVITLNGKF  59



Lambda      K        H        a         alpha
   0.314    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00018687

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal dom...  128     2e-40


>CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal domain.  Cyanate 
lyase (also known as cyanase) EC:4.2.1.104 is responsible 
for the hydrolysis of cyanate, allowing organisms that 
possess the enzyme to overcome the toxicity of environmental 
cyanate. This enzyme is composed of two domains, an N-terminal 
helix-turn-helix and this structurally unique C-terminal 
domain.
Length=64

 Score = 128 bits (325),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 1/65 (2%)

Query  95   EPLIYRLYEIVQNYGYAYKAVLNEKFGDGIMSAISFSTKVEKETDADGNNWAVITLRGKW  154
            +PLIYRLYEIVQ YG A K +++EKFGDGIMSAI FS  VEK  D  G +  VITL GK+
Sbjct  1    DPLIYRLYEIVQVYGPAIKELIHEKFGDGIMSAIDFSMDVEKVEDPKG-DRVVITLNGKF  59

Query  155  LPFSR  159
            LP+ +
Sbjct  60   LPYKK  64



Lambda      K        H        a         alpha
   0.316    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00013211

Length=222


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00018688

Length=222


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00018689

Length=144
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal dom...  127     3e-40


>CDD:426833 pfam02560, Cyanate_lyase, Cyanate lyase C-terminal domain.  Cyanate 
lyase (also known as cyanase) EC:4.2.1.104 is responsible 
for the hydrolysis of cyanate, allowing organisms that 
possess the enzyme to overcome the toxicity of environmental 
cyanate. This enzyme is composed of two domains, an N-terminal 
helix-turn-helix and this structurally unique C-terminal 
domain.
Length=64

 Score = 127 bits (321),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 1/65 (2%)

Query  79   EPLIYRLYEIVQNYGYAYKAVLNEKFGDGIMSAISFSTKVEKETDADGNNWAVITLRGKW  138
            +PLIYRLYEIVQ YG A K +++EKFGDGIMSAI FS  VEK  D  G +  VITL GK+
Sbjct  1    DPLIYRLYEIVQVYGPAIKELIHEKFGDGIMSAIDFSMDVEKVEDPKG-DRVVITLNGKF  59

Query  139  LPFSR  143
            LP+ +
Sbjct  60   LPYKK  64



Lambda      K        H        a         alpha
   0.317    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00013212

Length=395


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00013214

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00013213

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00018690

Length=406


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00018691

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase. This fam...  162     3e-47


>CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase.  This family includes 
various FAD dependent oxidoreductases: Glycerol-3-phosphate 
dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit 
EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate 
oxidase EC:1.4.3.1.
Length=339

 Score = 162 bits (413),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 105/360 (29%), Positives = 157/360 (44%), Gaps = 39/360 (11%)

Query  9    KIAIVGGGIVGSALAYFLSKSLENGNEVVLIDRSFSQLKGSTGHAPGFIGQ---YNESEA  65
             + ++GGGIVG + AY L++    G  V L++R      G++G   G I     Y E   
Sbjct  1    DVVVIGGGIVGLSTAYELARR---GLSVTLLERGDDPGSGASGRNAGLIHPGLRYLEPSE  57

Query  66   LTRLAVDTVSEYKK------IPGAFESIGGLEVATALEGVERLKVRYNMAKKVGLPAELL  119
            L RLA++ +  +++      I   F   G L +A   E  E L+      +++G+PAELL
Sbjct  58   LARLALEALDLWEELEEELGIDCGFRRCGVLVLARD-EEEEALEKLLAALRRLGVPAELL  116

Query  120  SPEQATKLAPDLVKNDILSALHFASDGAANAVRITSFFQDQARKNSVHFLE-TDVKEIIQ  178
              E+  +L P L    +   L +   G  +  R+       A    V  +E T+V  I +
Sbjct  117  DAEELRELEPLL--PGLRGGLFYPDGGHVDPARLLRALARAAEALGVRIIEGTEVTGIEE  174

Query  179  EDGSVNGVRTTSGLVKAEKVVIATGIWSEDLCDFGVPIPVIPVAHPYMYGEQCQPKPRKS  238
            E G V GV TT    +A+ VV A G W++ L   G+ +PV PV    +  E         
Sbjct  175  EGG-VWGVVTTG---EADAVVNAAGAWADLLALPGLRLPVRPVRGQVLVLEPLPEALLIL  230

Query  239  PFVRW--PEFHVYAR---DHGTAYGLGAYDHKPLYHKPNETAIGDWVDAFDATLERARSL  293
            P      P   VY R   D     G    +       P+        +  +  LE AR L
Sbjct  231  PVPITVDPGRGVYLRPRADGRLLLGGTDEEDGFDDPTPDP-------EEIEELLEAARRL  283

Query  294  IPAETNLTIKEKFNGIFSMTPDNLPLVGRISSIKGLYMATAV---WVTHAAGSAKFLTKL  350
             PA  +  I+  + G+  + PD LP++GR  S  GLY+AT      +T A G  K L +L
Sbjct  284  FPALAD--IERAWAGLRPL-PDGLPIIGRPGS-PGLYLATGHGGHGLTLAPGIGKLLAEL  339



Lambda      K        H        a         alpha
   0.316    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00018692

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-te...  104     6e-28
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  89.6    5e-23


>CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal 
domain.  C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, 
four helical up-and-down bundle.
Length=149

 Score = 104 bits (262),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 46/154 (30%), Positives = 74/154 (48%), Gaps = 10/154 (6%)

Query  168  NKGFPIIMSNFNPERLTLACAALRLARVCAEDAFHYAVQRETFGAPLIQRQAIQSKIFRF  227
             +GF + M   N ERL +A  AL LAR   ++A  YA +R+ FG PLI  Q ++ K+   
Sbjct  1    GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYARRRKAFGRPLIDFQLVRHKLAEM  60

Query  228  GLMIEPAYAFMEQLVNIIELTKDRPADDVKIGGMTALLKVMSTRALEKSVREAQQILGGA  287
               IE A   + +    ++      A+        ++ K+ ++ A  +    A Q+ GG 
Sbjct  61   AAEIEAARLLVYRAAEALDAGGPDGAE-------ASMAKLYASEAAVEVADLAMQLHGGY  113

Query  288  GYNKSGRGARIEQISRDVRVHVVGGGSEEIMMGL  321
            GY    R   +E++ RD RV  +G G+ EI   +
Sbjct  114  GYL---REYPVERLYRDARVLRIGEGTSEIQRNI  144


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 89.6 bits (223),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 41/87 (47%), Positives = 52/87 (60%), Gaps = 3/87 (3%)

Query  71   AGSDVANIQTTA-RLDGDHYVVNGAKKWITNGIWADYCTAAVRTGGPGR-NGISLLVIPL  128
            AGSDVA+++TTA   DG  +V+NG K WITN   AD      RTGG  R  GISL ++P 
Sbjct  9    AGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGGISLFLVPK  68

Query  129  TAPGVTRRRM-HNSGVNASGSTFLQFE  154
             APGV+ RR+    GV    +  L F+
Sbjct  69   DAPGVSVRRIETKLGVRGLPTGELVFD  95



Lambda      K        H        a         alpha
   0.320    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00018693

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  89.6    1e-23


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 89.6 bits (223),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 41/87 (47%), Positives = 52/87 (60%), Gaps = 3/87 (3%)

Query  71   AGSDVANIQTTA-RLDGDHYVVNGAKKWITNGIWADYCTAAVRTGGPGR-NGISLLVIPL  128
            AGSDVA+++TTA   DG  +V+NG K WITN   AD      RTGG  R  GISL ++P 
Sbjct  9    AGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGGISLFLVPK  68

Query  129  TAPGVTRRRM-HNSGVNASGSTFLQFE  154
             APGV+ RR+    GV    +  L F+
Sbjct  69   DAPGVSVRRIETKLGVRGLPTGELVFD  95



Lambda      K        H        a         alpha
   0.318    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00013216

Length=768
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  71.9    1e-14


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 71.9 bits (177),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 27/82 (33%), Positives = 46/82 (56%), Gaps = 8/82 (10%)

Query  264  FSEVRVLGRGSFGEVYHVKNHIDGQNYAIKKIPLSHRRLQQLQGGNQNQLESIMKEIRTL  323
            +  +R LG GSFG VY  K+   G+  AIKKI     +        + + ++I++EI+ L
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIK--------KKKDKNILREIKIL  52

Query  324  ARLEHTNVVRYYGAWVEQAHIS  345
             +L H N+VR Y A+ ++ ++ 
Sbjct  53   KKLNHPNIVRLYDAFEDKDNLY  74



Lambda      K        H        a         alpha
   0.316    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 980772448


Query= TCONS_00013217

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  108     7e-30
CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-te...  107     2e-29


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 108 bits (271),  Expect = 7e-30, Method: Composition-based stats.
 Identities = 44/95 (46%), Positives = 56/95 (59%), Gaps = 3/95 (3%)

Query  157  CLGITEPDAGSDVANIQTTA-RLDGDHYVVNGAKKWITNGIWADYCTAAVRTGGPGR-NG  214
               +TEP AGSDVA+++TTA   DG  +V+NG K WITN   AD      RTGG  R  G
Sbjct  1    AFALTEPGAGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGG  60

Query  215  ISLLVIPLTAPGVTRRRM-HNSGVNASGSTFLQFE  248
            ISL ++P  APGV+ RR+    GV    +  L F+
Sbjct  61   ISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95


>CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal 
domain.  The N-terminal domain of Acyl-CoA dehydrogenase is 
an all-alpha domain.
Length=113

 Score = 107 bits (270),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 45/127 (35%), Positives = 64/127 (50%), Gaps = 15/127 (12%)

Query  28   TDLHHELRAYVRNYVETSIVPYAQDWETAGQVPEEVRRRHCDLGF-GIVHPLTSEEDAAG  86
            T+    LR  VR + E  I P+A +W+  G+ P E+ ++  +LG  GI  P    E+  G
Sbjct  1    TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITIP----EEYGG  56

Query  87   ISLPGNVPREKWDTWCNLIVTDELTRVGYVGVIWGLGGGNSIGCPPIARFGTPEQRRRWL  146
              L         D     +V +EL R     V   L   +S+G PPI RFGT EQ+ R+L
Sbjct  57   AGL---------DYLAYALVAEELARAD-ASVALALSVHSSLGAPPILRFGTEEQKERYL  106

Query  147  PKVARGD  153
            PK+A G+
Sbjct  107  PKLASGE  113



Lambda      K        H        a         alpha
   0.318    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00018694

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  89.6    1e-23


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 89.6 bits (223),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 41/87 (47%), Positives = 52/87 (60%), Gaps = 3/87 (3%)

Query  71   AGSDVANIQTTA-RLDGDHYVVNGAKKWITNGIWADYCTAAVRTGGPGR-NGISLLVIPL  128
            AGSDVA+++TTA   DG  +V+NG K WITN   AD      RTGG  R  GISL ++P 
Sbjct  9    AGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGGISLFLVPK  68

Query  129  TAPGVTRRRM-HNSGVNASGSTFLQFE  154
             APGV+ RR+    GV    +  L F+
Sbjct  69   DAPGVSVRRIETKLGVRGLPTGELVFD  95



Lambda      K        H        a         alpha
   0.318    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00018695

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  108     7e-30
CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-te...  107     2e-29


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 108 bits (271),  Expect = 7e-30, Method: Composition-based stats.
 Identities = 44/95 (46%), Positives = 56/95 (59%), Gaps = 3/95 (3%)

Query  157  CLGITEPDAGSDVANIQTTA-RLDGDHYVVNGAKKWITNGIWADYCTAAVRTGGPGR-NG  214
               +TEP AGSDVA+++TTA   DG  +V+NG K WITN   AD      RTGG  R  G
Sbjct  1    AFALTEPGAGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGG  60

Query  215  ISLLVIPLTAPGVTRRRM-HNSGVNASGSTFLQFE  248
            ISL ++P  APGV+ RR+    GV    +  L F+
Sbjct  61   ISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95


>CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal 
domain.  The N-terminal domain of Acyl-CoA dehydrogenase is 
an all-alpha domain.
Length=113

 Score = 107 bits (270),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 45/127 (35%), Positives = 64/127 (50%), Gaps = 15/127 (12%)

Query  28   TDLHHELRAYVRNYVETSIVPYAQDWETAGQVPEEVRRRHCDLGF-GIVHPLTSEEDAAG  86
            T+    LR  VR + E  I P+A +W+  G+ P E+ ++  +LG  GI  P    E+  G
Sbjct  1    TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITIP----EEYGG  56

Query  87   ISLPGNVPREKWDTWCNLIVTDELTRVGYVGVIWGLGGGNSIGCPPIARFGTPEQRRRWL  146
              L         D     +V +EL R     V   L   +S+G PPI RFGT EQ+ R+L
Sbjct  57   AGL---------DYLAYALVAEELARAD-ASVALALSVHSSLGAPPILRFGTEEQKERYL  106

Query  147  PKVARGD  153
            PK+A G+
Sbjct  107  PKLASGE  113



Lambda      K        H        a         alpha
   0.318    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00013220

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-te...  109     3e-29
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  107     4e-29
CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-te...  104     9e-28


>CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal 
domain.  C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, 
four helical up-and-down bundle.
Length=149

 Score = 109 bits (275),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 46/154 (30%), Positives = 74/154 (48%), Gaps = 10/154 (6%)

Query  262  NKGFPIIMSNFNPERLTLACAALRLARVCAEDAFHYAVQRETFGAPLIQRQAIQSKIFRF  321
             +GF + M   N ERL +A  AL LAR   ++A  YA +R+ FG PLI  Q ++ K+   
Sbjct  1    GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYARRRKAFGRPLIDFQLVRHKLAEM  60

Query  322  GLMIEPAYAFMEQLVNIIELTKDRPADDVKIGGMTALLKVMSTRALEKSVREAQQILGGA  381
               IE A   + +    ++      A+        ++ K+ ++ A  +    A Q+ GG 
Sbjct  61   AAEIEAARLLVYRAAEALDAGGPDGAE-------ASMAKLYASEAAVEVADLAMQLHGGY  113

Query  382  GYNKSGRGARIEQISRDVRVHVVGGGSEEIMMGL  415
            GY    R   +E++ RD RV  +G G+ EI   +
Sbjct  114  GYL---REYPVERLYRDARVLRIGEGTSEIQRNI  144


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 107 bits (270),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 44/95 (46%), Positives = 56/95 (59%), Gaps = 3/95 (3%)

Query  157  CLGITEPDAGSDVANIQTTA-RLDGDHYVVNGAKKWITNGIWADYCTAAVRTGGPGR-NG  214
               +TEP AGSDVA+++TTA   DG  +V+NG K WITN   AD      RTGG  R  G
Sbjct  1    AFALTEPGAGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGG  60

Query  215  ISLLVIPLTAPGVTRRRM-HNSGVNASGSTFLQFE  248
            ISL ++P  APGV+ RR+    GV    +  L F+
Sbjct  61   ISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95


>CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal 
domain.  The N-terminal domain of Acyl-CoA dehydrogenase is 
an all-alpha domain.
Length=113

 Score = 104 bits (262),  Expect = 9e-28, Method: Composition-based stats.
 Identities = 45/127 (35%), Positives = 64/127 (50%), Gaps = 15/127 (12%)

Query  28   TDLHHELRAYVRNYVETSIVPYAQDWETAGQVPEEVRRRHCDLGF-GIVHPLTSEEDAAG  86
            T+    LR  VR + E  I P+A +W+  G+ P E+ ++  +LG  GI  P    E+  G
Sbjct  1    TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITIP----EEYGG  56

Query  87   ISLPGNVPREKWDTWCNLIVTDELTRVGYVGVIWGLGGGNSIGCPPIARFGTPEQRRRWL  146
              L         D     +V +EL R     V   L   +S+G PPI RFGT EQ+ R+L
Sbjct  57   AGL---------DYLAYALVAEELARAD-ASVALALSVHSSLGAPPILRFGTEEQKERYL  106

Query  147  PKVARGD  153
            PK+A G+
Sbjct  107  PKLASGE  113



Lambda      K        H        a         alpha
   0.320    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00018697

Length=206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-te...  103     7e-29


>CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal 
domain.  C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, 
four helical up-and-down bundle.
Length=149

 Score = 103 bits (259),  Expect = 7e-29, Method: Composition-based stats.
 Identities = 46/154 (30%), Positives = 74/154 (48%), Gaps = 10/154 (6%)

Query  31   NKGFPIIMSNFNPERLTLACAALRLARVCAEDAFHYAVQRETFGAPLIQRQAIQSKIFRF  90
             +GF + M   N ERL +A  AL LAR   ++A  YA +R+ FG PLI  Q ++ K+   
Sbjct  1    GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYARRRKAFGRPLIDFQLVRHKLAEM  60

Query  91   GLMIEPAYAFMEQLVNIIELTKDRPADDVKIGGMTALLKVMSTRALEKSVREAQQILGGA  150
               IE A   + +    ++      A+        ++ K+ ++ A  +    A Q+ GG 
Sbjct  61   AAEIEAARLLVYRAAEALDAGGPDGAE-------ASMAKLYASEAAVEVADLAMQLHGGY  113

Query  151  GYNKSGRGARIEQISRDVRVHVVGGGSEEIMMGL  184
            GY    R   +E++ RD RV  +G G+ EI   +
Sbjct  114  GYL---REYPVERLYRDARVLRIGEGTSEIQRNI  144



Lambda      K        H        a         alpha
   0.320    0.135    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00018698

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-te...  105     2e-28
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  90.8    1e-23


>CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal 
domain.  C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, 
four helical up-and-down bundle.
Length=149

 Score = 105 bits (263),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 46/154 (30%), Positives = 74/154 (48%), Gaps = 10/154 (6%)

Query  119  NKGFPIIMSNFNPERLTLACAALRLARVCAEDAFHYAVQRETFGAPLIQRQAIQSKIFRF  178
             +GF + M   N ERL +A  AL LAR   ++A  YA +R+ FG PLI  Q ++ K+   
Sbjct  1    GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYARRRKAFGRPLIDFQLVRHKLAEM  60

Query  179  GLMIEPAYAFMEQLVNIIELTKDRPADDVKIGGMTALLKVMSTRALEKSVREAQQILGGA  238
               IE A   + +    ++      A+        ++ K+ ++ A  +    A Q+ GG 
Sbjct  61   AAEIEAARLLVYRAAEALDAGGPDGAE-------ASMAKLYASEAAVEVADLAMQLHGGY  113

Query  239  GYNKSGRGARIEQISRDVRVHVVGGGSEEIMMGL  272
            GY    R   +E++ RD RV  +G G+ EI   +
Sbjct  114  GYL---REYPVERLYRDARVLRIGEGTSEIQRNI  144


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 90.8 bits (226),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 41/87 (47%), Positives = 52/87 (60%), Gaps = 3/87 (3%)

Query  22   AGSDVANIQTTA-RLDGDHYVVNGAKKWITNGIWADYCTAAVRTGGPGR-NGISLLVIPL  79
            AGSDVA+++TTA   DG  +V+NG K WITN   AD      RTGG  R  GISL ++P 
Sbjct  9    AGSDVASLKTTAADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHGGISLFLVPK  68

Query  80   TAPGVTRRRM-HNSGVNASGSTFLQFE  105
             APGV+ RR+    GV    +  L F+
Sbjct  69   DAPGVSVRRIETKLGVRGLPTGELVFD  95



Lambda      K        H        a         alpha
   0.320    0.136    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00013222

Length=1019
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460545 pfam02383, Syja_N, SacI homology domain. This Pfam fam...  409     4e-136


>CDD:460545 pfam02383, Syja_N, SacI homology domain.  This Pfam family represents 
a protein domain which shows homology to the yeast 
protein SacI. The SacI homology domain is most notably found 
at the amino terminal of the inositol 5'-phosphatase synaptojanin.
Length=295

 Score = 409 bits (1053),  Expect = 4e-136, Method: Composition-based stats.
 Identities = 134/321 (42%), Positives = 186/321 (58%), Gaps = 28/321 (9%)

Query  224  WALLGFIRFTGAYYMLLVTKRSQVAMVGGHYIYKIDGTELI-SLTTSSSSKLKPEKNPEE  282
            + +LG IR    YY++++TKR QV  +GGH IYKI   E I   ++ S ++L  +++P+E
Sbjct  1    YGILGLIRLLSGYYLIVITKREQVGQIGGHPIYKITDVEFIPLNSSLSDTQLAKKEHPDE  60

Query  283  ARYITILNNLDLSRSFYFSYSYDITRTLQHNICRERKLHQDGYSKGFHQDYNTM-FIWNH  341
             R + +L     S SFYFSY YD+T +LQ N+ R         S+    D     F WN 
Sbjct  61   ERLLKLLKLFLSSGSFYFSYDYDLTNSLQRNLTR---------SRSPSFDSLDDRFFWNR  111

Query  342  HLLSPAIAALKNPYQWCLPIIHGYVDQAKIDVYGRLAYLTIIARRSRFFAGARFLKRGAN  401
            HLL P I    +  +W LP+I G+V+Q K+ V+GR   LT+I+RRSR  AG R+L+RG +
Sbjct  112  HLLKPLIDFQLDLDRWILPLIQGFVEQGKLSVFGRSVTLTLISRRSRKRAGTRYLRRGID  171

Query  402  DLGYVANDVETEQIVSEMSETSFHAPGPALYANPLYTSYVQHRGSIPLYWTQDNSGVSPK  461
            D G VAN VETEQIVS  +  S               S+VQ RGSIPL+W+QD +    K
Sbjct  172  DDGNVANFVETEQIVSLNTSNS----------EGKIFSFVQIRGSIPLFWSQDPNL-KYK  220

Query  462  PDIELNLVDPFYSAAALHFDNLFERYGAPIYVLNLIKSRERTPRESKLLKEYTNAINYLN  521
            P I++   +    A   HFD+L ERYG P++++NL+   E+  RESKL + Y  A+ YLN
Sbjct  221  PKIQITRPEATQPAFKKHFDDLIERYG-PVHIVNLV---EKKGRESKLSEAYEEAVKYLN  276

Query  522  QFLPGDKKIIYKPWDMSRAAK  542
            QFLP   K+ Y  +D     K
Sbjct  277  QFLP--DKLRYTAFDFHHECK  295



Lambda      K        H        a         alpha
   0.317    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1306853548


Query= TCONS_00018699

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396348 pfam01743, PolyA_pol, Poly A polymerase head domain. T...  108     3e-29


>CDD:396348 pfam01743, PolyA_pol, Poly A polymerase head domain.  This family 
includes nucleic acid independent RNA polymerases, such 
as Poly(A) polymerase, which adds the poly (A) tail to mRNA 
EC:2.7.7.19. This family also includes the tRNA nucleotidyltransferase 
that adds the CCA to the 3' of the tRNA EC:2.7.7.25. 
This family is part of the nucleotidyltransferase superfamily.
Length=126

 Score = 108 bits (272),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 64/154 (42%), Gaps = 28/154 (18%)

Query  151  LRFTGGWVRDKLLGVDSHDIDVGISSMTGYQFGMALKDYLDIPENLEKYKRNHPNGHMKE  210
            L   GG VRD LLG    D+D+  +  T  Q     +       +L              
Sbjct  1    LYIVGGAVRDLLLGKTPKDVDI-ATDATPEQVATLFRR--RRIVHLLSGIEFG-------  50

Query  211  AIVSLHKIEANPEKSKHLETVTTKIFGFDIDLVNLRKEMYTDDSRNPQMEFGTAEEDALR  270
               ++H I  N      LE  T +I   + D  N R E YT          GT EEDA R
Sbjct  51   ---TIHVIFGNQI----LEVATFRIEFDESDFRNPRSEEYT----------GTLEEDAKR  93

Query  271  RDATINALFYNLNESKVEDLTGRGFSDMRDKIIR  304
            RD TINAL YN N  +V D  G G  D++  +IR
Sbjct  94   RDFTINALAYNPNSGEVIDYFG-GIKDLKSGVIR  126



Lambda      K        H        a         alpha
   0.317    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0745    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00013223

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396348 pfam01743, PolyA_pol, Poly A polymerase head domain. T...  107     4e-29


>CDD:396348 pfam01743, PolyA_pol, Poly A polymerase head domain.  This family 
includes nucleic acid independent RNA polymerases, such 
as Poly(A) polymerase, which adds the poly (A) tail to mRNA 
EC:2.7.7.19. This family also includes the tRNA nucleotidyltransferase 
that adds the CCA to the 3' of the tRNA EC:2.7.7.25. 
This family is part of the nucleotidyltransferase superfamily.
Length=126

 Score = 107 bits (269),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 64/154 (42%), Gaps = 28/154 (18%)

Query  151  LRFTGGWVRDKLLGVDSHDIDVGISSMTGYQFGMALKDYLDIPENLEKYKRNHPNGHMKE  210
            L   GG VRD LLG    D+D+  +  T  Q     +       +L              
Sbjct  1    LYIVGGAVRDLLLGKTPKDVDI-ATDATPEQVATLFRR--RRIVHLLSGIEFG-------  50

Query  211  AIVSLHKIEANPEKSKHLETVTTKIFGFDIDLVNLRKEMYTDDSRNPQMEFGTAEEDALR  270
               ++H I  N      LE  T +I   + D  N R E YT          GT EEDA R
Sbjct  51   ---TIHVIFGNQI----LEVATFRIEFDESDFRNPRSEEYT----------GTLEEDAKR  93

Query  271  RDATINALFYNLNESKVEDLTGRGFSDMRDKIIR  304
            RD TINAL YN N  +V D  G G  D++  +IR
Sbjct  94   RDFTINALAYNPNSGEVIDYFG-GIKDLKSGVIR  126



Lambda      K        H        a         alpha
   0.318    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00018700

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463688 pfam12739, TRAPPC-Trs85, ER-Golgi trafficking TRAPP I ...  310     8e-105


>CDD:463688 pfam12739, TRAPPC-Trs85, ER-Golgi trafficking TRAPP I complex 
85 kDa subunit.  This family is one of the subunits of the 
TRAPP Golgi trafficking complex. TRAPP subunits are found in 
two different sized complexes, TRAPP I and TRAPP II, and this 
Trs85 is in the smaller complex. TRAPP I, but Not TRAPP II, 
functions in ER-Golgi transport. Trs85p was reported to function 
in the cytosol-to-vacuole targeting pathway, suggesting 
a role for this subunit in autophagy as well as in secretion. 
The overall architecture of TRAPP I shows the other components 
to be Bet3p (TRAPPC3), Bet5p (TRAPPC1), Trs20p (TRAPPC2), 
Trs23p (TRAPPC4), Trs31p (TRAPPC5), Trs33p (TRAPPC6a 
and b) and Trs85p.
Length=350

 Score = 310 bits (796),  Expect = 8e-105, Method: Composition-based stats.
 Identities = 116/269 (43%), Positives = 157/269 (58%), Gaps = 15/269 (6%)

Query  2    AIRVFVRELVAQSIVPYMENRVAVWNDQVASRRRGISGRFMSMSRKWAGFGSSSRSGING  61
            +IR FVRE V QS++P+ME ++  WN+QVA  R+G++GR  S S+KW G  SS  S    
Sbjct  87   SIRAFVREFVVQSLIPFMERKIRFWNEQVAQPRKGLTGRLFSASKKWFGSNSSKSSS---  143

Query  62   SGGGNYDFARGFYKPDTPEAILRKMADFAFMLRDWKLSASTYELLRSDYTNDKAWRYHAG  121
                    + G+Y P +PEA LRK+AD +FMLRD+KL+ STYELLR D+ NDKAW+Y A 
Sbjct  144  --------SSGYYPPSSPEAQLRKLADLSFMLRDYKLAYSTYELLRKDFKNDKAWKYLAS  195

Query  122  AHEMCAVSTLLNPMAMPAKPRLEAIDQMLETACYSYLTRCSDAPNALRCLCLAMELLKSR  181
            A EMCAVS LL    +  K  ++ ID  LE A Y+YL+RC+    ALRC+ L+ ELL SR
Sbjct  196  AQEMCAVSLLLGAQQISTKKMIDIIDPYLENAIYTYLSRCNSPLYALRCMLLSSELLLSR  255

Query  182  GGFATESAAKWAMRAMDLGLVGGIGQILFSERISACYASRPPLTGVRWGGRRRKAGMWSI  241
                   A     + + +  +G +   L  ER + CY  RP         RRRKA    +
Sbjct  256  TPAY---AWAALEKLLRMCSLGPVRSALLLERAAYCYLLRPD-ISSAGLTRRRKAAFHML  311

Query  242  LAADLWLRVGKPTLASSCLEEAERLYADV  270
            LAA  W + G+   A  CL++A ++Y   
Sbjct  312  LAAHRWSKAGQKRQALRCLKQALQVYRGK  340



Lambda      K        H        a         alpha
   0.319    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00013225

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00013226

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.299    0.116    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00013227

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00018702

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00018701

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00018703

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00013228

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.299    0.116    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00018704

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00018705

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00018706

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00013229

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.299    0.116    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00013230

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.299    0.116    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00013231

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00013232

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27. This p...  172     2e-51


>CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27.  This protein 
forms the C subunit of DNA polymerase delta. It carries the 
essential residues for binding to the Pol1 subunit of polymerase 
alpha, from residues 293-332, which are characterized 
by the motif D--G--VT, referred to as the DPIM motif. The first 
160 residues of the protein form the minimal domain for 
binding to the B subunit, Cdc1, of polymerase delta, the final 
10 C-terminal residues, 362-372, being the DNA sliding clamp, 
PCNA, binding motif.
Length=427

 Score = 172 bits (437),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 97/270 (36%), Positives = 131/270 (49%), Gaps = 53/270 (20%)

Query  1    MLYEFHRTENKKKPQSVNATYIITGIQRPSEKATNSIHAESHDDGDDIMQGSPFLPSSMP  60
            MLY+FH ++ KKKP  ++ATY+++G +  +                              
Sbjct  22   MLYDFHESKRKKKPAQLHATYLVSGRKAQNGH----------------------------  53

Query  61   NQDAASDEVPTTSIILAREEDLDDAKATFESISLIHIYSLQPAVLQDLNVLTDVHREMLA  120
                        +I+L REEDL++AK+ F +++ +HIYS+QPA L+D N L DV  ++L 
Sbjct  54   ---------TCHNIVLVREEDLEEAKSKFATVTSVHIYSVQPAPLKDSNPLYDVDYDILK  104

Query  121  A---HAHEDPLEYGKQWGMIQNKDVKRRTGV--RPPPPAPTPAQEAAAPSKR-----PSQ  170
            A   +   D L YG Q G I N +VKRR+G+   PPPP  +P  E  AP K      PS 
Sbjct  105  ANLKNCSRDSLIYGAQAGPIVNPNVKRRSGLGIPPPPPPASPPLETTAPGKTPPVGKPSA  164

Query  171  DEATQKVKSESKKAEHAAMTSQTKAEEKPPVK--PSEKTAPLKR---EKSDLFSSFAKAK  225
               T   KSE KK   A     +K       +  PS K   LKR    KS++ S+F KAK
Sbjct  165  APETSPAKSEKKKKSAAKSQDASKETTPEKAEKAPSVKAPSLKRSPSAKSNIMSAFFKAK  224

Query  226  SKQKKDG-SATPAVSGAESAEPSGAEDGKL  254
             K KK   SA+      ESAE SG ED  L
Sbjct  225  PKNKKKKTSASEQKVQEESAEESGKEDVTL  254



Lambda      K        H        a         alpha
   0.307    0.123    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00018707

Length=132
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27. This p...  99.9    3e-26


>CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27.  This protein 
forms the C subunit of DNA polymerase delta. It carries the 
essential residues for binding to the Pol1 subunit of polymerase 
alpha, from residues 293-332, which are characterized 
by the motif D--G--VT, referred to as the DPIM motif. The first 
160 residues of the protein form the minimal domain for 
binding to the B subunit, Cdc1, of polymerase delta, the final 
10 C-terminal residues, 362-372, being the DNA sliding clamp, 
PCNA, binding motif.
Length=427

 Score = 99.9 bits (249),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 37/113 (33%)

Query  19   RTVTYRSLGRALKVHCNLAKRMLYEFHRTENKKKPQSVNATYIITGIQRPSEKATNSIHA  78
            + VTYR L R L+VH N AK+MLY+FH ++ KKKP  ++ATY+++G +  +         
Sbjct  1    KIVTYRWLSRTLRVHVNQAKQMLYDFHESKRKKKPAQLHATYLVSGRKAQNGH-------  53

Query  79   ESHDDGDDIMQGSPFLPSSMPNQDAASDEVPTTSIILAREEDLDGKCLRLARS  131
                                             +I+L REEDL+    + A  
Sbjct  54   ------------------------------TCHNIVLVREEDLEEAKSKFATV  76



Lambda      K        H        a         alpha
   0.315    0.129    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00018708

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27. This p...  252     2e-80


>CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27.  This protein 
forms the C subunit of DNA polymerase delta. It carries the 
essential residues for binding to the Pol1 subunit of polymerase 
alpha, from residues 293-332, which are characterized 
by the motif D--G--VT, referred to as the DPIM motif. The first 
160 residues of the protein form the minimal domain for 
binding to the B subunit, Cdc1, of polymerase delta, the final 
10 C-terminal residues, 362-372, being the DNA sliding clamp, 
PCNA, binding motif.
Length=427

 Score = 252 bits (644),  Expect = 2e-80, Method: Composition-based stats.
 Identities = 161/416 (39%), Positives = 217/416 (52%), Gaps = 71/416 (17%)

Query  19   RTVTYRSLGRALKVHCNLAKRMLYEFHRTENKKKPQSVNATYIITGIQRPSEKATNSIHA  78
            + VTYR L R L+VH N AK+MLY+FH ++ KKKP  ++ATY+++G +  +         
Sbjct  1    KIVTYRWLSRTLRVHVNQAKQMLYDFHESKRKKKPAQLHATYLVSGRKAQNGH-------  53

Query  79   ESHDDGDDIMQGSPFLPSSMPNQDAASDEVPTTSIILAREEDLDDAKATFESISLIHIYS  138
                                             +I+L REEDL++AK+ F +++ +HIYS
Sbjct  54   ------------------------------TCHNIVLVREEDLEEAKSKFATVTSVHIYS  83

Query  139  LQPAVLQDLNVLTDVHREMLAA---HAHEDPLEYGKQWGMIQNKDVKRRTGV--RPPPPA  193
            +QPA L+D N L DV  ++L A   +   D L YG Q G I N +VKRR+G+   PPPP 
Sbjct  84   VQPAPLKDSNPLYDVDYDILKANLKNCSRDSLIYGAQAGPIVNPNVKRRSGLGIPPPPPP  143

Query  194  PTPAQEAAAPSKR-----PSQDEATQKVKSESKKAEHAAMTSQTKAEEKPPVK--PSEKT  246
             +P  E  AP K      PS    T   KSE KK   A     +K       +  PS K 
Sbjct  144  ASPPLETTAPGKTPPVGKPSAAPETSPAKSEKKKKSAAKSQDASKETTPEKAEKAPSVKA  203

Query  247  APLKR---EKSDLFSSFAKAKSKQKKDG-SATPAVSGAESAEPSGAEDVLGD---ASDEE  299
              LKR    KS++ S+F KAK K KK   SA+      ESAE SG EDV  +   A++EE
Sbjct  204  PSLKRSPSAKSNIMSAFFKAKPKNKKKKTSASEQKVQEESAEESGKEDVTLEDDSAAEEE  263

Query  300  EPEELFPDS---------GKSSTANNRETRKEREEKLRKMMEDEDDDDEEMADVPEPPME  350
            E E+L                S  + RE+RKE+ E+L+K M ++D DD+EM DVPE P+ 
Sbjct  264  EDEQLPTKKDKRRQKRGESSDSEESTRESRKEKRERLKK-MMEDDSDDDEMEDVPESPVA  322

Query  351  EEKTIDQPP----TKEEPREEITVSGGRRR-GRRKVMKKKTVKDEEGYLGEKEEPT  401
             E+     P     KE  +EE+T SG  RR  RRKVMKKKT KDEEGY+  ++   
Sbjct  323  TEEEETGSPPPLLKKEVEKEEVTESGDGRRRKRRKVMKKKTFKDEEGYMVTEKVYE  378



Lambda      K        H        a         alpha
   0.305    0.124    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00013235

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27. This p...  275     6e-89


>CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27.  This protein 
forms the C subunit of DNA polymerase delta. It carries the 
essential residues for binding to the Pol1 subunit of polymerase 
alpha, from residues 293-332, which are characterized 
by the motif D--G--VT, referred to as the DPIM motif. The first 
160 residues of the protein form the minimal domain for 
binding to the B subunit, Cdc1, of polymerase delta, the final 
10 C-terminal residues, 362-372, being the DNA sliding clamp, 
PCNA, binding motif.
Length=427

 Score = 275 bits (704),  Expect = 6e-89, Method: Composition-based stats.
 Identities = 187/465 (40%), Positives = 245/465 (53%), Gaps = 81/465 (17%)

Query  19   RTVTYRSLGRALKVHCNLAKRMLYEFHRTENKKKPQSVNATYIITGIQRPSEKATNSIHA  78
            + VTYR L R L+VH N AK+MLY+FH ++ KKKP  ++ATY+++G +  +         
Sbjct  1    KIVTYRWLSRTLRVHVNQAKQMLYDFHESKRKKKPAQLHATYLVSGRKAQNGH-------  53

Query  79   ESHDDGDDIMQGSPFLPSSMPNQDAASDEVPTTSIILAREEDLDDAKATFESISLIHIYS  138
                                             +I+L REEDL++AK+ F +++ +HIYS
Sbjct  54   ------------------------------TCHNIVLVREEDLEEAKSKFATVTSVHIYS  83

Query  139  LQPAVLQDLNVLTDVHREMLAA---HAHEDPLEYGKQWGMIQNKDVKRRTGV--RPPPPA  193
            +QPA L+D N L DV  ++L A   +   D L YG Q G I N +VKRR+G+   PPPP 
Sbjct  84   VQPAPLKDSNPLYDVDYDILKANLKNCSRDSLIYGAQAGPIVNPNVKRRSGLGIPPPPPP  143

Query  194  PTPAQEAAAPSKR-----PSQDEATQKVKSESKKAEHAAMTSQTKAEEKPPVK--PSEKT  246
             +P  E  AP K      PS    T   KSE KK   A     +K       +  PS K 
Sbjct  144  ASPPLETTAPGKTPPVGKPSAAPETSPAKSEKKKKSAAKSQDASKETTPEKAEKAPSVKA  203

Query  247  APLKR---EKSDLFSSFAKAKSKQKKDG-SATPAVSGAESAEPSGAEDVLGD---ASDEE  299
              LKR    KS++ S+F KAK K KK   SA+      ESAE SG EDV  +   A++EE
Sbjct  204  PSLKRSPSAKSNIMSAFFKAKPKNKKKKTSASEQKVQEESAEESGKEDVTLEDDSAAEEE  263

Query  300  EPEELFPDS---------GKSSTANNRETRKEREEKLRKMMEDEDDDDEEMADVPEPPME  350
            E E+L                S  + RE+RKE+ E+L+K M ++D DD+EM DVPE P+ 
Sbjct  264  EDEQLPTKKDKRRQKRGESSDSEESTRESRKEKRERLKK-MMEDDSDDDEMEDVPESPVA  322

Query  351  EEKTIDQPP----TKEEPREEITVSGGRRR-GRRKVMKKKTVKDEEGYL---EEPTWESF  402
             E+     P     KE  +EE+T SG  RR  RRKVMKKKT KDEEGY+   +   WESF
Sbjct  323  TEEEETGSPPPLLKKEVEKEEVTESGDGRRRKRRKVMKKKTFKDEEGYMVTEKVYEWESF  382

Query  403  SEDEPAPPPKKKPALSAPKGKAGGKAGQG-------NIMSFFSKK  440
            SEDE  PP K KPA+S P   A  K G+        +IMSFF KK
Sbjct  383  SEDEDEPPVKPKPAVSTPASPAAAKKGKAPKANGQGSIMSFFGKK  427



Lambda      K        H        a         alpha
   0.306    0.124    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00013234

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27. This p...  291     4e-95


>CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27.  This protein 
forms the C subunit of DNA polymerase delta. It carries the 
essential residues for binding to the Pol1 subunit of polymerase 
alpha, from residues 293-332, which are characterized 
by the motif D--G--VT, referred to as the DPIM motif. The first 
160 residues of the protein form the minimal domain for 
binding to the B subunit, Cdc1, of polymerase delta, the final 
10 C-terminal residues, 362-372, being the DNA sliding clamp, 
PCNA, binding motif.
Length=427

 Score = 291 bits (746),  Expect = 4e-95, Method: Composition-based stats.
 Identities = 193/465 (42%), Positives = 247/465 (53%), Gaps = 77/465 (17%)

Query  19   RTVTYRSLGRALKVHCNLAKRMLYEFHRTENKKKPQSVNATYIITGIQRPSEKATNSIHA  78
            + VTYR L R L+VH N AK+MLY+FH ++ KKKP  ++ATY+++G +  +         
Sbjct  1    KIVTYRWLSRTLRVHVNQAKQMLYDFHESKRKKKPAQLHATYLVSGRKAQNGH-------  53

Query  79   ESHDDGDDIMQGSPFLPSSMPNQDAASDEVPTTSIILAREEDLDDAKATFESISLIHIYS  138
                                             +I+L REEDL++AK+ F +++ +HIYS
Sbjct  54   ------------------------------TCHNIVLVREEDLEEAKSKFATVTSVHIYS  83

Query  139  LQPAVLQDLNVLTDVHREMLAA---HAHEDPLEYGKQWGMIQNKDVKRRTGV--RPPPPA  193
            +QPA L+D N L DV  ++L A   +   D L YG Q G I N +VKRR+G+   PPPP 
Sbjct  84   VQPAPLKDSNPLYDVDYDILKANLKNCSRDSLIYGAQAGPIVNPNVKRRSGLGIPPPPPP  143

Query  194  PTPAQEAAAPSKR-----PSQDEATQKVKSESKKAEHAAMTSQTKAEEKPPVK--PSEKT  246
             +P  E  AP K      PS    T   KSE KK   A     +K       +  PS K 
Sbjct  144  ASPPLETTAPGKTPPVGKPSAAPETSPAKSEKKKKSAAKSQDASKETTPEKAEKAPSVKA  203

Query  247  APLKR---EKSDLFSSFAKAKSKQKKDG-SATPAVSGAESAEPSGAEDVVLGDAS--DEE  300
              LKR    KS++ S+F KAK K KK   SA+      ESAE SG EDV L D S  +EE
Sbjct  204  PSLKRSPSAKSNIMSAFFKAKPKNKKKKTSASEQKVQEESAEESGKEDVTLEDDSAAEEE  263

Query  301  EPEELFPDS---------GKSSTANNRETRKEREEKLRKMMEDEDDDDEEMADVPEPPME  351
            E E+L                S  + RE+RKE+ E+L+KMMED+ DDDE   DVPE P+ 
Sbjct  264  EDEQLPTKKDKRRQKRGESSDSEESTRESRKEKRERLKKMMEDDSDDDEM-EDVPESPVA  322

Query  352  EEKTIDQPP----TKEEPREEITVSGGRRR-GRRKVMKKKTVKDEEGYLVTVEEPTWESF  406
             E+     P     KE  +EE+T SG  RR  RRKVMKKKT KDEEGY+VT +   WESF
Sbjct  323  TEEEETGSPPPLLKKEVEKEEVTESGDGRRRKRRKVMKKKTFKDEEGYMVTEKVYEWESF  382

Query  407  SEDEPAPPPKKKPALSAPKGKAGGKAGQG-------NIMSFFSKK  444
            SEDE  PP K KPA+S P   A  K G+        +IMSFF KK
Sbjct  383  SEDEDEPPVKPKPAVSTPASPAAAKKGKAPKANGQGSIMSFFGKK  427



Lambda      K        H        a         alpha
   0.306    0.124    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00018709

Length=132
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27. This p...  99.9    3e-26


>CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27.  This protein 
forms the C subunit of DNA polymerase delta. It carries the 
essential residues for binding to the Pol1 subunit of polymerase 
alpha, from residues 293-332, which are characterized 
by the motif D--G--VT, referred to as the DPIM motif. The first 
160 residues of the protein form the minimal domain for 
binding to the B subunit, Cdc1, of polymerase delta, the final 
10 C-terminal residues, 362-372, being the DNA sliding clamp, 
PCNA, binding motif.
Length=427

 Score = 99.9 bits (249),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 37/113 (33%)

Query  19   RTVTYRSLGRALKVHCNLAKRMLYEFHRTENKKKPQSVNATYIITGIQRPSEKATNSIHA  78
            + VTYR L R L+VH N AK+MLY+FH ++ KKKP  ++ATY+++G +  +         
Sbjct  1    KIVTYRWLSRTLRVHVNQAKQMLYDFHESKRKKKPAQLHATYLVSGRKAQNGH-------  53

Query  79   ESHDDGDDIMQGSPFLPSSMPNQDAASDEVPTTSIILAREEDLDGKCLRLARS  131
                                             +I+L REEDL+    + A  
Sbjct  54   ------------------------------TCHNIVLVREEDLEEAKSKFATV  76



Lambda      K        H        a         alpha
   0.315    0.129    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00013236

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27. This p...  274     1e-88


>CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27.  This protein 
forms the C subunit of DNA polymerase delta. It carries the 
essential residues for binding to the Pol1 subunit of polymerase 
alpha, from residues 293-332, which are characterized 
by the motif D--G--VT, referred to as the DPIM motif. The first 
160 residues of the protein form the minimal domain for 
binding to the B subunit, Cdc1, of polymerase delta, the final 
10 C-terminal residues, 362-372, being the DNA sliding clamp, 
PCNA, binding motif.
Length=427

 Score = 274 bits (702),  Expect = 1e-88, Method: Composition-based stats.
 Identities = 187/465 (40%), Positives = 237/465 (51%), Gaps = 83/465 (18%)

Query  19   RTVTYRSLGRALKVHCNLAKRMLYEFHRTENKKKPQSVNATYIITGIQRPSEKATNSIHA  78
            + VTYR L R L+VH N AK+MLY+FH ++ KKKP  ++ATY+++G +  +         
Sbjct  1    KIVTYRWLSRTLRVHVNQAKQMLYDFHESKRKKKPAQLHATYLVSGRKAQNGH-------  53

Query  79   ESHDDGDDIMQGSPFLPSSMPNQDAASDEVPTTSIILAREEDLDGKCLRLARS------N  132
                                             +I+L REEDL+    + A        +
Sbjct  54   ------------------------------TCHNIVLVREEDLEEAKSKFATVTSVHIYS  83

Query  133  LQPAVLQDLNVLTDVHREMLAA---HAHEDPLEYGKQWGMIQNKDVKRRTGV--RPPPPA  187
            +QPA L+D N L DV  ++L A   +   D L YG Q G I N +VKRR+G+   PPPP 
Sbjct  84   VQPAPLKDSNPLYDVDYDILKANLKNCSRDSLIYGAQAGPIVNPNVKRRSGLGIPPPPPP  143

Query  188  PTPAQEAAAPSKR-----PSQDEATQKVKSESKKAEHAAMTSQTKAEEKPPVK--PSEKT  240
             +P  E  AP K      PS    T   KSE KK   A     +K       +  PS K 
Sbjct  144  ASPPLETTAPGKTPPVGKPSAAPETSPAKSEKKKKSAAKSQDASKETTPEKAEKAPSVKA  203

Query  241  APLKR---EKSDLFSSFAKAKSKQKKDG-SATPAVSGAESAEPSGAEDVVLGDAS--DEE  294
              LKR    KS++ S+F KAK K KK   SA+      ESAE SG EDV L D S  +EE
Sbjct  204  PSLKRSPSAKSNIMSAFFKAKPKNKKKKTSASEQKVQEESAEESGKEDVTLEDDSAAEEE  263

Query  295  EPEELFPDS---------GKSSTANNRETRKEREEKLRKMMEDEDDDDEEMADVPEPPME  345
            E E+L                S  + RE+RKE+ E+L+KMMED+ DDDE   DVPE P+ 
Sbjct  264  EDEQLPTKKDKRRQKRGESSDSEESTRESRKEKRERLKKMMEDDSDDDEM-EDVPESPVA  322

Query  346  EEKTIDQPP----TKEEPREEITVSGGRRR-GRRKVMKKKTVKDEEGYLVTVEEPTWESF  400
             E+     P     KE  +EE+T SG  RR  RRKVMKKKT KDEEGY+VT +   WESF
Sbjct  323  TEEEETGSPPPLLKKEVEKEEVTESGDGRRRKRRKVMKKKTFKDEEGYMVTEKVYEWESF  382

Query  401  SEDEPAPPPKKKPALSAPKGKAGGKAGQG-------NIMSFFSKK  438
            SEDE  PP K KPA+S P   A  K G+        +IMSFF KK
Sbjct  383  SEDEDEPPVKPKPAVSTPASPAAAKKGKAPKANGQGSIMSFFGKK  427



Lambda      K        H        a         alpha
   0.306    0.124    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 533728992


Query= TCONS_00013237

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27. This p...  241     2e-76


>CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27.  This protein 
forms the C subunit of DNA polymerase delta. It carries the 
essential residues for binding to the Pol1 subunit of polymerase 
alpha, from residues 293-332, which are characterized 
by the motif D--G--VT, referred to as the DPIM motif. The first 
160 residues of the protein form the minimal domain for 
binding to the B subunit, Cdc1, of polymerase delta, the final 
10 C-terminal residues, 362-372, being the DNA sliding clamp, 
PCNA, binding motif.
Length=427

 Score = 241 bits (617),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 179/444 (40%), Positives = 232/444 (52%), Gaps = 78/444 (18%)

Query  1    MLYEFHRTENKKKPQSVNATYIITGIQRPSEKATNSIHAESHDDGDDIMQGSPFLPSSMP  60
            MLY+FH ++ KKKP  ++ATY+++G +  +                              
Sbjct  22   MLYDFHESKRKKKPAQLHATYLVSGRKAQNGH----------------------------  53

Query  61   NQDAASDEVPTTSIILAREEDLDDAKATFESISLIHIYSLQPAVLQDLNVLTDVHREMLA  120
                        +I+L REEDL++AK+ F +++ +HIYS+QPA L+D N L DV  ++L 
Sbjct  54   ---------TCHNIVLVREEDLEEAKSKFATVTSVHIYSVQPAPLKDSNPLYDVDYDILK  104

Query  121  A---HAHEDPLEYGKQWGMIQNKDVKRRTGV--RPPPPAPTPAQEAAAPSKR-----PSQ  170
            A   +   D L YG Q G I N +VKRR+G+   PPPP  +P  E  AP K      PS 
Sbjct  105  ANLKNCSRDSLIYGAQAGPIVNPNVKRRSGLGIPPPPPPASPPLETTAPGKTPPVGKPSA  164

Query  171  DEATQKVKSESKKAEHAAMTSQTKAEEKPPVK--PSEKTAPLKR---EKSDLFSSFAKAK  225
               T   KSE KK   A     +K       +  PS K   LKR    KS++ S+F KAK
Sbjct  165  APETSPAKSEKKKKSAAKSQDASKETTPEKAEKAPSVKAPSLKRSPSAKSNIMSAFFKAK  224

Query  226  SKQKKDG-SATPAVSGAESAEPSGAEDVLGD---ASDEEEPEELFPDS---------GKS  272
             K KK   SA+      ESAE SG EDV  +   A++EEE E+L                
Sbjct  225  PKNKKKKTSASEQKVQEESAEESGKEDVTLEDDSAAEEEEDEQLPTKKDKRRQKRGESSD  284

Query  273  STANNRETRKEREEKLRKMMEDEDDDDEEMADVPEPPMEEEKTIDQPP----TKEEPREE  328
            S  + RE+RKE+ E+L+KMMED+ DDDE   DVPE P+  E+     P     KE  +EE
Sbjct  285  SEESTRESRKEKRERLKKMMEDDSDDDEM-EDVPESPVATEEEETGSPPPLLKKEVEKEE  343

Query  329  ITVSGGRRR-GRRKVMKKKTVKDEEGYLVTVEEPTWESFSEDEPAPPPKKKPALSAPKGK  387
            +T SG  RR  RRKVMKKKT KDEEGY+VT +   WESFSEDE  PP K KPA+S P   
Sbjct  344  VTESGDGRRRKRRKVMKKKTFKDEEGYMVTEKVYEWESFSEDEDEPPVKPKPAVSTPASP  403

Query  388  AGGKAGQG-------NIMSFFSKK  404
            A  K G+        +IMSFF KK
Sbjct  404  AAAKKGKAPKANGQGSIMSFFGKK  427



Lambda      K        H        a         alpha
   0.304    0.123    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00018710

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27. This p...  172     2e-51


>CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27.  This protein 
forms the C subunit of DNA polymerase delta. It carries the 
essential residues for binding to the Pol1 subunit of polymerase 
alpha, from residues 293-332, which are characterized 
by the motif D--G--VT, referred to as the DPIM motif. The first 
160 residues of the protein form the minimal domain for 
binding to the B subunit, Cdc1, of polymerase delta, the final 
10 C-terminal residues, 362-372, being the DNA sliding clamp, 
PCNA, binding motif.
Length=427

 Score = 172 bits (437),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 97/270 (36%), Positives = 131/270 (49%), Gaps = 53/270 (20%)

Query  1    MLYEFHRTENKKKPQSVNATYIITGIQRPSEKATNSIHAESHDDGDDIMQGSPFLPSSMP  60
            MLY+FH ++ KKKP  ++ATY+++G +  +                              
Sbjct  22   MLYDFHESKRKKKPAQLHATYLVSGRKAQNGH----------------------------  53

Query  61   NQDAASDEVPTTSIILAREEDLDDAKATFESISLIHIYSLQPAVLQDLNVLTDVHREMLA  120
                        +I+L REEDL++AK+ F +++ +HIYS+QPA L+D N L DV  ++L 
Sbjct  54   ---------TCHNIVLVREEDLEEAKSKFATVTSVHIYSVQPAPLKDSNPLYDVDYDILK  104

Query  121  A---HAHEDPLEYGKQWGMIQNKDVKRRTGV--RPPPPAPTPAQEAAAPSKR-----PSQ  170
            A   +   D L YG Q G I N +VKRR+G+   PPPP  +P  E  AP K      PS 
Sbjct  105  ANLKNCSRDSLIYGAQAGPIVNPNVKRRSGLGIPPPPPPASPPLETTAPGKTPPVGKPSA  164

Query  171  DEATQKVKSESKKAEHAAMTSQTKAEEKPPVK--PSEKTAPLKR---EKSDLFSSFAKAK  225
               T   KSE KK   A     +K       +  PS K   LKR    KS++ S+F KAK
Sbjct  165  APETSPAKSEKKKKSAAKSQDASKETTPEKAEKAPSVKAPSLKRSPSAKSNIMSAFFKAK  224

Query  226  SKQKKDG-SATPAVSGAESAEPSGAEDGKL  254
             K KK   SA+      ESAE SG ED  L
Sbjct  225  PKNKKKKTSASEQKVQEESAEESGKEDVTL  254



Lambda      K        H        a         alpha
   0.307    0.123    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00018711

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27. This p...  246     3e-78


>CDD:462819 pfam09507, CDC27, DNA polymerase subunit Cdc27.  This protein 
forms the C subunit of DNA polymerase delta. It carries the 
essential residues for binding to the Pol1 subunit of polymerase 
alpha, from residues 293-332, which are characterized 
by the motif D--G--VT, referred to as the DPIM motif. The first 
160 residues of the protein form the minimal domain for 
binding to the B subunit, Cdc1, of polymerase delta, the final 
10 C-terminal residues, 362-372, being the DNA sliding clamp, 
PCNA, binding motif.
Length=427

 Score = 246 bits (630),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 181/444 (41%), Positives = 232/444 (52%), Gaps = 77/444 (17%)

Query  1    MLYEFHRTENKKKPQSVNATYIITGIQRPSEKATNSIHAESHDDGDDIMQGSPFLPSSMP  60
            MLY+FH ++ KKKP  ++ATY+++G +  +                              
Sbjct  22   MLYDFHESKRKKKPAQLHATYLVSGRKAQNGH----------------------------  53

Query  61   NQDAASDEVPTTSIILAREEDLDDAKATFESISLIHIYSLQPAVLQDLNVLTDVHREMLA  120
                        +I+L REEDL++AK+ F +++ +HIYS+QPA L+D N L DV  ++L 
Sbjct  54   ---------TCHNIVLVREEDLEEAKSKFATVTSVHIYSVQPAPLKDSNPLYDVDYDILK  104

Query  121  A---HAHEDPLEYGKQWGMIQNKDVKRRTGV--RPPPPAPTPAQEAAAPSKR-----PSQ  170
            A   +   D L YG Q G I N +VKRR+G+   PPPP  +P  E  AP K      PS 
Sbjct  105  ANLKNCSRDSLIYGAQAGPIVNPNVKRRSGLGIPPPPPPASPPLETTAPGKTPPVGKPSA  164

Query  171  DEATQKVKSESKKAEHAAMTSQTKAEEKPPVK--PSEKTAPLKR---EKSDLFSSFAKAK  225
               T   KSE KK   A     +K       +  PS K   LKR    KS++ S+F KAK
Sbjct  165  APETSPAKSEKKKKSAAKSQDASKETTPEKAEKAPSVKAPSLKRSPSAKSNIMSAFFKAK  224

Query  226  SKQKKDG-SATPAVSGAESAEPSGAEDVVLGDAS--DEEEPEELFPDS---------GKS  273
             K KK   SA+      ESAE SG EDV L D S  +EEE E+L                
Sbjct  225  PKNKKKKTSASEQKVQEESAEESGKEDVTLEDDSAAEEEEDEQLPTKKDKRRQKRGESSD  284

Query  274  STANNRETRKEREEKLRKMMEDEDDDDEEMADVPEPPMEEEKTIDQPP----TKEEPREE  329
            S  + RE+RKE+ E+L+KMMED+ DDDE   DVPE P+  E+     P     KE  +EE
Sbjct  285  SEESTRESRKEKRERLKKMMEDDSDDDEM-EDVPESPVATEEEETGSPPPLLKKEVEKEE  343

Query  330  ITVSGGRRR-GRRKVMKKKTVKDEEGYLVTVEEPTWESFSEDEPAPPPKKKPALSAPKGK  388
            +T SG  RR  RRKVMKKKT KDEEGY+VT +   WESFSEDE  PP K KPA+S P   
Sbjct  344  VTESGDGRRRKRRKVMKKKTFKDEEGYMVTEKVYEWESFSEDEDEPPVKPKPAVSTPASP  403

Query  389  AGGKAGQG-------NIMSFFSKK  405
            A  K G+        +IMSFF KK
Sbjct  404  AAAKKGKAPKANGQGSIMSFFGKK  427



Lambda      K        H        a         alpha
   0.304    0.123    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00013238

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398431 pfam04757, Pex2_Pex12, Pex2 / Pex12 amino terminal reg...  102     2e-26


>CDD:398431 pfam04757, Pex2_Pex12, Pex2 / Pex12 amino terminal region.  This 
region is found at the N terminal of a number of known and 
predicted peroxins including Pex2, Pex10 and Pex12. This 
conserved region is usually associated with a C terminal ring 
finger (pfam00097) domain.
Length=213

 Score = 102 bits (257),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 47/169 (28%), Positives = 60/169 (36%), Gaps = 38/169 (22%)

Query  1    MVGIPYLKRKLDEGYDIHAAPQASLILGGGPRYNPSDDLPPRPTIRQRLMYYYKWFLRNV  60
            +V +PYL RKLD                  PR + +D        R  L    K +L  +
Sbjct  83   LVLLPYLLRKLDSLL---------------PRLSANDLE--SRNARDSLKSRLKRYLLKL  125

Query  61   YPSVNAAYYFSILAFNLAYLFDNTKYSSPFLWLIGTRIRRLGAADHRAIAEVLDAKPSAS  120
            YP + + Y    L   L YL    KY S    L+G R  RL   D               
Sbjct  126  YPFLESLYKLLNLHLFLFYL--TGKYYSLSKRLLGIRYVRLKPLDI--------------  169

Query  121  AAGARSRPGSGLLGLLSPQNLYPQLLASLRYFLPASIFALKFLEWWHAS  169
                  R     L      N + +LL  L   L A I  LK LEWW++S
Sbjct  170  -FSNERRVSYEQL----LWNAFSELLGFLLPLLLAVILFLKLLEWWYSS  213



Lambda      K        H        a         alpha
   0.319    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00013239

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429138 pfam06824, Glyco_hydro_125, Metal-independent alpha-ma...  701     0.0  


>CDD:429138 pfam06824, Glyco_hydro_125, Metal-independent alpha-mannosidase 
(GH125).  This family, which contains bacterial and fungal 
glycoside hydrolases, is also known as GH125. They function 
as metal-independent alpha-mannosidases, with specificity 
for alpha-1,6-linked non-reducing terminal mannose residues. 
Structurally this family is part of the 6 hairpin glycosidase 
superfamily.
Length=416

 Score = 701 bits (1812),  Expect = 0.0, Method: Composition-based stats.
 Identities = 240/456 (53%), Positives = 299/456 (66%), Gaps = 42/456 (9%)

Query  3    DKDLAQLFRNAFPNTLDTTIRWHTDGSTAAKKTKKDGAQWQGPQSFIVTGDIHAEWLRDS  62
            D DLA+LF N FPNTLDTT++WH DG                P +F++TGDI A WLRDS
Sbjct  1    DPDLARLFENCFPNTLDTTVKWHGDGGD-------------EPLTFVITGDIPAMWLRDS  47

Query  63   TNQLSGYQALAKKDKALHNLILGAINTQAEFVIQSPYCNAFQPPPPSGLKPTPNGQD-DK  121
             NQL  Y  LAK+D +L +LI G IN QA +++  PY NAFQPPP SGL P  NG   D 
Sbjct  48   ANQLQPYLPLAKEDPSLASLIRGVINRQARYILIDPYANAFQPPPESGLPPGHNGWASDT  107

Query  122  VHPAYEPSVVFECKYELDSLAHFLALGTQFFENTGSTEFLTERWYMALNTLLSVLDAQSQ  181
            VHP Y+PSVVFE KYELDSLA+FL L   +++ TG T F  +RW  A+ T+L VL  Q Q
Sbjct  108  VHPPYDPSVVFERKYELDSLAYFLRLSYDYYKATGDTSFFDDRWLKAVETILDVLREQQQ  167

Query  182  PTFNEEGQFVTNQYTFQRTTTAGTETLSLGGIGNPLNNGTGLIRSAFRPSDDATILGYFI  241
            PT  +  + + + YTFQR T  GTETL  GG GNP+N  TGLIRSAFRPSDDATI G+ I
Sbjct  168  PT-PDRHEVLKSPYTFQRPTDRGTETLPNGGRGNPVNP-TGLIRSAFRPSDDATIYGFLI  225

Query  242  PPNAMMSVQLKKTADVIKAAGGSADLVKKLRQRGEELDHAVREHGVVHHSKYGDVFAFEV  301
            P N M  V+L++ A++++A GG   L  + R    E+  A+ +HGVV H K+G ++A+EV
Sbjct  226  PSNMMAVVELRQLAEILEALGGDPALAAEARALAAEIRAAIEKHGVVEHPKFGKIYAYEV  285

Query  302  DGYGSRILMDDANIPSLLSLPLLGYVDEKDQVYRNTRKMILDKSGNPYYLTGSAFHGIGG  361
            DGYGS +LMDDAN+PSLLSLP LGYVD  D +Y+NTRK +L K GNPYY  G A  GIGG
Sbjct  286  DGYGSALLMDDANVPSLLSLPYLGYVDADDPIYQNTRKFVLSK-GNPYYFKGKAAEGIGG  344

Query  362  PHSKFISSPSINLSMNKGDANHDSYAVGLQNAWPMSLLVQAMTSDSEAEITECINLVRNS  421
            PH                         G   AWPMSL++QA+TSD + EI EC+ L+ N+
Sbjct  345  PH------------------------TGPGYAWPMSLIMQALTSDDDEEILECLRLLLNT  380

Query  422  SL-LGLVHESINVNNIKDYTRPWFAWTNSVFAQTIL  456
            +   GL+HES NV++  DYTRPWFAW NS+F + IL
Sbjct  381  TAGTGLMHESFNVDDPSDYTRPWFAWANSLFGELIL  416



Lambda      K        H        a         alpha
   0.316    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00013240

Length=551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429138 pfam06824, Glyco_hydro_125, Metal-independent alpha-ma...  703     0.0  


>CDD:429138 pfam06824, Glyco_hydro_125, Metal-independent alpha-mannosidase 
(GH125).  This family, which contains bacterial and fungal 
glycoside hydrolases, is also known as GH125. They function 
as metal-independent alpha-mannosidases, with specificity 
for alpha-1,6-linked non-reducing terminal mannose residues. 
Structurally this family is part of the 6 hairpin glycosidase 
superfamily.
Length=416

 Score = 703 bits (1818),  Expect = 0.0, Method: Composition-based stats.
 Identities = 240/456 (53%), Positives = 299/456 (66%), Gaps = 42/456 (9%)

Query  85   DKDLAQLFRNAFPNTLDTTIRWHTDGSTAAKKTKKDGAQWQGPQSFIVTGDIHAEWLRDS  144
            D DLA+LF N FPNTLDTT++WH DG                P +F++TGDI A WLRDS
Sbjct  1    DPDLARLFENCFPNTLDTTVKWHGDGGD-------------EPLTFVITGDIPAMWLRDS  47

Query  145  TNQLSGYQALAKKDKALHNLILGAINTQAEFVIQSPYCNAFQPPPPSGLKPTPNGQD-DK  203
             NQL  Y  LAK+D +L +LI G IN QA +++  PY NAFQPPP SGL P  NG   D 
Sbjct  48   ANQLQPYLPLAKEDPSLASLIRGVINRQARYILIDPYANAFQPPPESGLPPGHNGWASDT  107

Query  204  VHPAYEPSVVFECKYELDSLAHFLALGTQFFENTGSTEFLTERWYMALNTLLSVLDAQSQ  263
            VHP Y+PSVVFE KYELDSLA+FL L   +++ TG T F  +RW  A+ T+L VL  Q Q
Sbjct  108  VHPPYDPSVVFERKYELDSLAYFLRLSYDYYKATGDTSFFDDRWLKAVETILDVLREQQQ  167

Query  264  PTFNEEGQFVTNQYTFQRTTTAGTETLSLGGIGNPLNNGTGLIRSAFRPSDDATILGYFI  323
            PT  +  + + + YTFQR T  GTETL  GG GNP+N  TGLIRSAFRPSDDATI G+ I
Sbjct  168  PT-PDRHEVLKSPYTFQRPTDRGTETLPNGGRGNPVNP-TGLIRSAFRPSDDATIYGFLI  225

Query  324  PPNAMMSVQLKKTADVIKAAGGSADLVKKLRQRGEELDHAVREHGVVHHSKYGDVFAFEV  383
            P N M  V+L++ A++++A GG   L  + R    E+  A+ +HGVV H K+G ++A+EV
Sbjct  226  PSNMMAVVELRQLAEILEALGGDPALAAEARALAAEIRAAIEKHGVVEHPKFGKIYAYEV  285

Query  384  DGYGSRILMDDANIPSLLSLPLLGYVDEKDQVYRNTRKMILDKSGNPYYLTGSAFHGIGG  443
            DGYGS +LMDDAN+PSLLSLP LGYVD  D +Y+NTRK +L K GNPYY  G A  GIGG
Sbjct  286  DGYGSALLMDDANVPSLLSLPYLGYVDADDPIYQNTRKFVLSK-GNPYYFKGKAAEGIGG  344

Query  444  PHSKFISSPSINLSMNKGDANHDSYAVGLQNAWPMSLLVQAMTSDSEAEITECINLVRNS  503
            PH                         G   AWPMSL++QA+TSD + EI EC+ L+ N+
Sbjct  345  PH------------------------TGPGYAWPMSLIMQALTSDDDEEILECLRLLLNT  380

Query  504  SL-LGLVHESINVNNIKDYTRPWFAWTNSVFAQTIL  538
            +   GL+HES NV++  DYTRPWFAW NS+F + IL
Sbjct  381  TAGTGLMHESFNVDDPSDYTRPWFAWANSLFGELIL  416



Lambda      K        H        a         alpha
   0.317    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685942452


Query= TCONS_00013241

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429138 pfam06824, Glyco_hydro_125, Metal-independent alpha-ma...  718     0.0  


>CDD:429138 pfam06824, Glyco_hydro_125, Metal-independent alpha-mannosidase 
(GH125).  This family, which contains bacterial and fungal 
glycoside hydrolases, is also known as GH125. They function 
as metal-independent alpha-mannosidases, with specificity 
for alpha-1,6-linked non-reducing terminal mannose residues. 
Structurally this family is part of the 6 hairpin glycosidase 
superfamily.
Length=416

 Score = 718 bits (1857),  Expect = 0.0, Method: Composition-based stats.
 Identities = 240/432 (56%), Positives = 299/432 (69%), Gaps = 18/432 (4%)

Query  85   DKDLAQLFRNAFPNTLDTTIRWHTDGSTAAKKTKKDGAQWQGPQSFIVTGDIHAEWLRDS  144
            D DLA+LF N FPNTLDTT++WH DG                P +F++TGDI A WLRDS
Sbjct  1    DPDLARLFENCFPNTLDTTVKWHGDGGD-------------EPLTFVITGDIPAMWLRDS  47

Query  145  TNQLSGYQALAKKDKALHNLILGAINTQAEFVIQSPYCNAFQPPPPSGLKPTPNGQD-DK  203
             NQL  Y  LAK+D +L +LI G IN QA +++  PY NAFQPPP SGL P  NG   D 
Sbjct  48   ANQLQPYLPLAKEDPSLASLIRGVINRQARYILIDPYANAFQPPPESGLPPGHNGWASDT  107

Query  204  VHPAYEPSVVFECKYELDSLAHFLALGTQFFENTGSTEFLTERWYMALNTLLSVLDAQSQ  263
            VHP Y+PSVVFE KYELDSLA+FL L   +++ TG T F  +RW  A+ T+L VL  Q Q
Sbjct  108  VHPPYDPSVVFERKYELDSLAYFLRLSYDYYKATGDTSFFDDRWLKAVETILDVLREQQQ  167

Query  264  PTFNEEGQFVTNQYTFQRTTTAGTETLSLGGIGNPLNNGTGLIRSAFRPSDDATILGYFI  323
            PT  +  + + + YTFQR T  GTETL  GG GNP+N  TGLIRSAFRPSDDATI G+ I
Sbjct  168  PT-PDRHEVLKSPYTFQRPTDRGTETLPNGGRGNPVNP-TGLIRSAFRPSDDATIYGFLI  225

Query  324  PPNAMMSVQLKKTADVIKAAGGSADLVKKLRQRGEELDHAVREHGVVHHSKYGDVFAFEV  383
            P N M  V+L++ A++++A GG   L  + R    E+  A+ +HGVV H K+G ++A+EV
Sbjct  226  PSNMMAVVELRQLAEILEALGGDPALAAEARALAAEIRAAIEKHGVVEHPKFGKIYAYEV  285

Query  384  DGYGSRILMDDANIPSLLSLPLLGYVDEKDQVYRNTRKMILDKSGNPYYLTGSAFHGIGG  443
            DGYGS +LMDDAN+PSLLSLP LGYVD  D +Y+NTRK +L K GNPYY  G A  GIGG
Sbjct  286  DGYGSALLMDDANVPSLLSLPYLGYVDADDPIYQNTRKFVLSK-GNPYYFKGKAAEGIGG  344

Query  444  PHIGLQNAWPMSLLVQAMTSDSEAEITECINLVRNSSL-LGLVHESINVNNIKDYTRPWF  502
            PH G   AWPMSL++QA+TSD + EI EC+ L+ N++   GL+HES NV++  DYTRPWF
Sbjct  345  PHTGPGYAWPMSLIMQALTSDDDEEILECLRLLLNTTAGTGLMHESFNVDDPSDYTRPWF  404

Query  503  AWTNSVFAQTIL  514
            AW NS+F + IL
Sbjct  405  AWANSLFGELIL  416



Lambda      K        H        a         alpha
   0.317    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00018712

Length=558


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 696403448


Query= TCONS_00013242

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461505 pfam04981, NMD3, NMD3 family. The NMD3 protein is invo...  313     5e-105


>CDD:461505 pfam04981, NMD3, NMD3 family.  The NMD3 protein is involved in 
nonsense mediated mRNA decay. This amino terminal region contains 
four conserved CXXC motifs that could be metal binding. 
NMD3 is involved in export of the 60S ribosomal subunit 
is mediated by the adapter protein Nmd3p in a Crm1p-dependent 
pathway.
Length=242

 Score = 313 bits (803),  Expect = 5e-105, Method: Composition-based stats.
 Identities = 138/248 (56%), Positives = 167/248 (67%), Gaps = 23/248 (9%)

Query  24   CCNCGAPIDGTTSAGALCQDCVRLTVDISQGIPREGVLHFCRDCERWLQPPSGWVSAALE  83
            CC CG PI+       LC DC R  VDI++GIP+   + FCR C R+L P   WV A LE
Sbjct  1    CCRCGRPIE--PPINGLCVDCYRKEVDITEGIPK-ITVTFCRGCGRYL-PGGRWVRA-LE  55

Query  84   SKELLALCLRKL--RGLN--------KVRIIDASFIWTEPHSRRIKVKITIQQEA--FQG  131
            S+ELLA CL+KL  +GLN        KV ++DA FIWTEPHS+RIKVK+T+Q E     G
Sbjct  56   SRELLAECLKKLVSKGLNVHEDVEDVKVELVDAEFIWTEPHSKRIKVKLTVQGEVRGLVG  115

Query  132  TIVQQAFEVEYVVHTQQCPDCAKSYTHNTWRASVQVRQK-----VPHKRTFLYLEQLILK  186
            TI+QQ F VE VV  QQCPDC++      W A VQVRQK     V HKRTFLYLEQLILK
Sbjct  116  TILQQEFVVEVVVRRQQCPDCSRIAG-GYWEAIVQVRQKRELTEVEHKRTFLYLEQLILK  174

Query  187  HNAHQDTVNIKEAKDGLDFFFAQRNHAEKMVDFLSSVAPIKVKKSQELISMDIHTSTKSY  246
            H+AH     IKE KDGLDF+F  RNHA K+VDFLSSV P KVK+S++L+S D  +   +Y
Sbjct  175  HDAHAFISKIKEVKDGLDFYFGSRNHARKIVDFLSSVVPGKVKESKKLVSHDKDSGKYNY  234

Query  247  KFTFSVEL  254
            +FT+SV +
Sbjct  235  RFTYSVRI  242



Lambda      K        H        a         alpha
   0.318    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00013243

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461505 pfam04981, NMD3, NMD3 family. The NMD3 protein is invo...  313     5e-105


>CDD:461505 pfam04981, NMD3, NMD3 family.  The NMD3 protein is involved in 
nonsense mediated mRNA decay. This amino terminal region contains 
four conserved CXXC motifs that could be metal binding. 
NMD3 is involved in export of the 60S ribosomal subunit 
is mediated by the adapter protein Nmd3p in a Crm1p-dependent 
pathway.
Length=242

 Score = 313 bits (803),  Expect = 5e-105, Method: Composition-based stats.
 Identities = 138/248 (56%), Positives = 167/248 (67%), Gaps = 23/248 (9%)

Query  24   CCNCGAPIDGTTSAGALCQDCVRLTVDISQGIPREGVLHFCRDCERWLQPPSGWVSAALE  83
            CC CG PI+       LC DC R  VDI++GIP+   + FCR C R+L P   WV A LE
Sbjct  1    CCRCGRPIE--PPINGLCVDCYRKEVDITEGIPK-ITVTFCRGCGRYL-PGGRWVRA-LE  55

Query  84   SKELLALCLRKL--RGLN--------KVRIIDASFIWTEPHSRRIKVKITIQQEA--FQG  131
            S+ELLA CL+KL  +GLN        KV ++DA FIWTEPHS+RIKVK+T+Q E     G
Sbjct  56   SRELLAECLKKLVSKGLNVHEDVEDVKVELVDAEFIWTEPHSKRIKVKLTVQGEVRGLVG  115

Query  132  TIVQQAFEVEYVVHTQQCPDCAKSYTHNTWRASVQVRQK-----VPHKRTFLYLEQLILK  186
            TI+QQ F VE VV  QQCPDC++      W A VQVRQK     V HKRTFLYLEQLILK
Sbjct  116  TILQQEFVVEVVVRRQQCPDCSRIAG-GYWEAIVQVRQKRELTEVEHKRTFLYLEQLILK  174

Query  187  HNAHQDTVNIKEAKDGLDFFFAQRNHAEKMVDFLSSVAPIKVKKSQELISMDIHTSTKSY  246
            H+AH     IKE KDGLDF+F  RNHA K+VDFLSSV P KVK+S++L+S D  +   +Y
Sbjct  175  HDAHAFISKIKEVKDGLDFYFGSRNHARKIVDFLSSVVPGKVKESKKLVSHDKDSGKYNY  234

Query  247  KFTFSVEL  254
            +FT+SV +
Sbjct  235  RFTYSVRI  242



Lambda      K        H        a         alpha
   0.318    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00013244

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461505 pfam04981, NMD3, NMD3 family. The NMD3 protein is invo...  66.5    3e-13


>CDD:461505 pfam04981, NMD3, NMD3 family.  The NMD3 protein is involved in 
nonsense mediated mRNA decay. This amino terminal region contains 
four conserved CXXC motifs that could be metal binding. 
NMD3 is involved in export of the 60S ribosomal subunit 
is mediated by the adapter protein Nmd3p in a Crm1p-dependent 
pathway.
Length=242

 Score = 66.5 bits (163),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 30/39 (77%), Gaps = 0/39 (0%)

Query  1    MVDFLSSVAPIKVKKSQELISMDIHTSTKSYKFTFSVEL  39
            +VDFLSSV P KVK+S++L+S D  +   +Y+FT+SV +
Sbjct  204  IVDFLSSVVPGKVKESKKLVSHDKDSGKYNYRFTYSVRI  242



Lambda      K        H        a         alpha
   0.315    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00013245

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464775 pfam15613, WSD, Williams-Beuren syndrome DDT (WSD), D-...  68.7    1e-15


>CDD:464775 pfam15613, WSD, Williams-Beuren syndrome DDT (WSD), D-TOX E motif. 
 This family represents the combined alpha-helical module 
found in diverse eukaryotic chromatin proteins. Based on 
the Ioc3 structure, the N-terminus of this module is inferred 
to interact with nucleosomal linker DNA and the SLIDE domain 
of ISWI proteins. The resulting complex forms a protein 
ruler that measures out the spacing between two adjacent nucleosomes. 
The acidic residue from the GxD signature at the N-terminus 
is a major determinant of the interaction between 
the ISWI and WHIM motifs. The N-terminal portion also contacts 
the inter-nucleosomal linker DNA. The module shows a great 
domain architectural diversity and is often combined with 
other modified histone peptide recognizing and DNA binding domains, 
some of which discriminate methylated DNA. The WSD module 
constitutes the inter-nucleosomal linker DNA binding site 
in the major groove of DNA, and was first identified as 
WSD, the D-TOX E motif of plant homeodomains homologous with 
the mutant transcription factor causing Williams-Beuren syndrome 
in association with the DDT-domain.
Length=69

 Score = 68.7 bits (169),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 32/124 (26%), Positives = 43/124 (35%), Gaps = 59/124 (48%)

Query  94   RTRCLGKDRFCNRYWWFERNAMPYGGMPNSSTAEAHYANGRLWVQGPDEMERVGFIDVPD  153
            R+  LG+DR  NRYWWF                      GRL+V+ P + E         
Sbjct  2    RSLPLGRDRRYNRYWWF------------------DPGTGRLFVESPSDGE---------  34

Query  154  DQRKQYQKEFHTTPAERKKNEEGPTRLSTAHEWGYYDDPDVIDKLIDWLDPRGNRESRLR  213
                                            WG Y   + +D LI  L+PRG RES L+
Sbjct  35   --------------------------------WGVYSSKEQLDALIASLNPRGVRESALK  62

Query  214  KELQ  217
            + L+
Sbjct  63   EALE  66



Lambda      K        H        a         alpha
   0.314    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 372672612


Query= TCONS_00013246

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00018713

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00013248

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00013247

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00013249

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00013250

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397453 pfam03388, Lectin_leg-like, Legume-like lectin family....  114     2e-30


>CDD:397453 pfam03388, Lectin_leg-like, Legume-like lectin family.  Lectins 
are structurally diverse proteins that bind to specific carbohydrates. 
This family includes the VIP36 and ERGIC-53 lectins. 
These two proteins were the first recognized members 
of a family of animal lectins similar (19-24%) to the leguminous 
plant lectins. The alignment for this family aligns residues 
lying towards the N-terminus, where the similarity of 
VIP36 and ERGIC-53 is greatest. However, while Fiedler and Simons 
identified these proteins as a new family of animal lectins, 
our alignment also includes yeast sequences. ERGIC-53 
is a 53kD protein, localized to the intermediate region between 
the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate 
Compartment, ERGIC). It was identified as 
a calcium-dependent, mannose-specific lectin. Its dysfunction 
has been associated with combined factors V and VIII deficiency 
OMIM:227300 OMIM:601567, suggesting an important and substrate-specific 
role for ERGIC-53 in the glycoprotein- secreting 
pathway.
Length=226

 Score = 114 bits (287),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 70/228 (31%), Positives = 98/228 (43%), Gaps = 30/228 (13%)

Query  21   ESSSFGYGHTISPDRDSIPGWQVGGEGHTPQILSNKVILTPPYPGNTRGYAWSQSPLSHP  80
               S    +        IP W+ GG   +  + SN + LTP    + +G  W++ P    
Sbjct  5    REHSLKKPYLGQGSGT-IPNWEYGG---STILSSNYIRLTPDLQ-SQKGSLWTKQPTDLD  59

Query  81   EWSAEFQFRATGVER-GGGNLQLWYVKDGRSK---IGSSSIYTAGQFDGFALVIDT---H  133
             W  E  FR  G  R  G  L +WY  +   +    GS       +F+G A+ +DT   H
Sbjct  60   SWEVEVTFRVHGSSRLFGDGLAIWYTSERGIEGPVFGSKD-----KFNGLAIFLDTYDNH  114

Query  134  GGRGG-SIRGFLNDGTTDYKSHRSVDSLAFGHCDYAYRNLGRPSVVRLKHT---------  183
             G     I G LNDG+  Y   +         C   +RN   P+++R+K+          
Sbjct  115  NGPLFPYISGMLNDGSKPYDHDKDGTHQELASCTADFRNKDYPTLIRIKYDNNTLTVMID  174

Query  184  NAVLEVTVDDKLCFSTNKVGLPTGNNFGITAAT---PENPDSFEIFKF  228
            N +LE  VD KLCF  N V LPTG  FG++A T    +N D F I  F
Sbjct  175  NGLLENKVDWKLCFQVNNVILPTGYYFGVSAQTGDLSDNHDIFSILTF  222



Lambda      K        H        a         alpha
   0.314    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00018714

Length=525


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.122    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00013251

Length=525


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.122    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00013252

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397453 pfam03388, Lectin_leg-like, Legume-like lectin family....  72.9    1e-15


>CDD:397453 pfam03388, Lectin_leg-like, Legume-like lectin family.  Lectins 
are structurally diverse proteins that bind to specific carbohydrates. 
This family includes the VIP36 and ERGIC-53 lectins. 
These two proteins were the first recognized members 
of a family of animal lectins similar (19-24%) to the leguminous 
plant lectins. The alignment for this family aligns residues 
lying towards the N-terminus, where the similarity of 
VIP36 and ERGIC-53 is greatest. However, while Fiedler and Simons 
identified these proteins as a new family of animal lectins, 
our alignment also includes yeast sequences. ERGIC-53 
is a 53kD protein, localized to the intermediate region between 
the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate 
Compartment, ERGIC). It was identified as 
a calcium-dependent, mannose-specific lectin. Its dysfunction 
has been associated with combined factors V and VIII deficiency 
OMIM:227300 OMIM:601567, suggesting an important and substrate-specific 
role for ERGIC-53 in the glycoprotein- secreting 
pathway.
Length=226

 Score = 72.9 bits (179),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 38/109 (35%), Positives = 51/109 (47%), Gaps = 12/109 (11%)

Query  48   HTPQIGGSIRGFLNDGTTDYKSHRSVDSLAFGHCDYAYRNLGRPSVVRLKHT--------  99
            H   +   I G LNDG+  Y   +         C   +RN   P+++R+K+         
Sbjct  114  HNGPLFPYISGMLNDGSKPYDHDKDGTHQELASCTADFRNKDYPTLIRIKYDNNTLTVMI  173

Query  100  -NAVLEVTVDDKLCFSTNKVGLPTGNNFGITAAT---PENPDSFEIFKF  144
             N +LE  VD KLCF  N V LPTG  FG++A T    +N D F I  F
Sbjct  174  DNGLLENKVDWKLCFQVNNVILPTGYYFGVSAQTGDLSDNHDIFSILTF  222



Lambda      K        H        a         alpha
   0.317    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00013253

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00013254

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00013255

Length=745
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428158 pfam04855, SNF5, SNF5 / SMARCB1 / INI1. SNF5 is a comp...  296     3e-97


>CDD:428158 pfam04855, SNF5, SNF5 / SMARCB1 / INI1.  SNF5 is a component 
of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling 
complex that regulates the transcription 
of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class 
complexes characterized so far. This family consists 
of the conserved region of SNF5, including a direct repeat 
motif. SNF5 is essential for the assembly promoter targeting 
and chromatin remodelling activity of the SWI-SNF complex. 
SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, 
actin-dependent regulator of chromatin, subfamily 
b, member 1, and also INI1 for integrase interactor 1. 
Loss-of function mutations in SNF5 are thought to contribute 
to oncogenesis in malignant rhabdoid tumors (MRTs).
Length=186

 Score = 296 bits (761),  Expect = 3e-97, Method: Composition-based stats.
 Identities = 99/225 (44%), Positives = 128/225 (57%), Gaps = 48/225 (21%)

Query  232  EQVEDLVPIRLDIDWEKIKIRDTFTWNLHDRVVSPDLFAEKLVEDLGLPLETCTPLVRMI  291
            E  E LVPIR+D+D +K ++RDTFTWNLH+ +++P+ FA+ L EDL LP E        I
Sbjct  1    ELPETLVPIRIDLDIDKYRLRDTFTWNLHETLITPEQFAQTLCEDLDLPNEPAPAFADQI  60

Query  292  SRSIQEQLADY---------YPQIYMEEDALDPNLPYSAYKNDEMRILIKLNITIGQHTL  342
            ++ I+EQL +Y         YP +  E+D LDP+LPY    +D++RILIKL+ITIG H L
Sbjct  61   AKQIREQLEEYAGVALHPLPYPHVEEEDDPLDPDLPYL-NPDDDLRILIKLDITIGNHLL  119

Query  343  IDQFEWDINDPFNSPEEFAARMTNDLSLSGEFTTAIAHSIREQSQLFTKSLYILSHPFDG  402
             DQFEWD+  P N+PEEFA +   DL LSGEF TAIAH+IREQ   + KSL         
Sbjct  120  TDQFEWDLLSPLNTPEEFAKQTCADLGLSGEFVTAIAHAIREQVLRYKKSLC--------  171

Query  403  RPIDDPDLKAAFLPSPLTSSFRPFQAAKEFTPYLYELNEAELERT  447
                                          TP L EL+E ELE+ 
Sbjct  172  ------------------------------TPKLEELSEEELEKR  186



Lambda      K        H        a         alpha
   0.313    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 947303952


Query= TCONS_00013257

Length=726
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428158 pfam04855, SNF5, SNF5 / SMARCB1 / INI1. SNF5 is a comp...  297     2e-97


>CDD:428158 pfam04855, SNF5, SNF5 / SMARCB1 / INI1.  SNF5 is a component 
of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling 
complex that regulates the transcription 
of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class 
complexes characterized so far. This family consists 
of the conserved region of SNF5, including a direct repeat 
motif. SNF5 is essential for the assembly promoter targeting 
and chromatin remodelling activity of the SWI-SNF complex. 
SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, 
actin-dependent regulator of chromatin, subfamily 
b, member 1, and also INI1 for integrase interactor 1. 
Loss-of function mutations in SNF5 are thought to contribute 
to oncogenesis in malignant rhabdoid tumors (MRTs).
Length=186

 Score = 297 bits (762),  Expect = 2e-97, Method: Composition-based stats.
 Identities = 99/225 (44%), Positives = 128/225 (57%), Gaps = 48/225 (21%)

Query  232  EQVEDLVPIRLDIDWEKIKIRDTFTWNLHDRVVSPDLFAEKLVEDLGLPLETCTPLVRMI  291
            E  E LVPIR+D+D +K ++RDTFTWNLH+ +++P+ FA+ L EDL LP E        I
Sbjct  1    ELPETLVPIRIDLDIDKYRLRDTFTWNLHETLITPEQFAQTLCEDLDLPNEPAPAFADQI  60

Query  292  SRSIQEQLADY---------YPQIYMEEDALDPNLPYSAYKNDEMRILIKLNITIGQHTL  342
            ++ I+EQL +Y         YP +  E+D LDP+LPY    +D++RILIKL+ITIG H L
Sbjct  61   AKQIREQLEEYAGVALHPLPYPHVEEEDDPLDPDLPYL-NPDDDLRILIKLDITIGNHLL  119

Query  343  IDQFEWDINDPFNSPEEFAARMTNDLSLSGEFTTAIAHSIREQSQLFTKSLYILSHPFDG  402
             DQFEWD+  P N+PEEFA +   DL LSGEF TAIAH+IREQ   + KSL         
Sbjct  120  TDQFEWDLLSPLNTPEEFAKQTCADLGLSGEFVTAIAHAIREQVLRYKKSLC--------  171

Query  403  RPIDDPDLKAAFLPSPLTSSFRPFQAAKEFTPYLYELNEAELERT  447
                                          TP L EL+E ELE+ 
Sbjct  172  ------------------------------TPKLEELSEEELEKR  186



Lambda      K        H        a         alpha
   0.314    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 919656064


Query= TCONS_00013258

Length=743
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428158 pfam04855, SNF5, SNF5 / SMARCB1 / INI1. SNF5 is a comp...  296     3e-97


>CDD:428158 pfam04855, SNF5, SNF5 / SMARCB1 / INI1.  SNF5 is a component 
of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling 
complex that regulates the transcription 
of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class 
complexes characterized so far. This family consists 
of the conserved region of SNF5, including a direct repeat 
motif. SNF5 is essential for the assembly promoter targeting 
and chromatin remodelling activity of the SWI-SNF complex. 
SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, 
actin-dependent regulator of chromatin, subfamily 
b, member 1, and also INI1 for integrase interactor 1. 
Loss-of function mutations in SNF5 are thought to contribute 
to oncogenesis in malignant rhabdoid tumors (MRTs).
Length=186

 Score = 296 bits (761),  Expect = 3e-97, Method: Composition-based stats.
 Identities = 99/225 (44%), Positives = 128/225 (57%), Gaps = 48/225 (21%)

Query  232  EQVEDLVPIRLDIDWEKIKIRDTFTWNLHDRVVSPDLFAEKLVEDLGLPLETCTPLVRMI  291
            E  E LVPIR+D+D +K ++RDTFTWNLH+ +++P+ FA+ L EDL LP E        I
Sbjct  1    ELPETLVPIRIDLDIDKYRLRDTFTWNLHETLITPEQFAQTLCEDLDLPNEPAPAFADQI  60

Query  292  SRSIQEQLADY---------YPQIYMEEDALDPNLPYSAYKNDEMRILIKLNITIGQHTL  342
            ++ I+EQL +Y         YP +  E+D LDP+LPY    +D++RILIKL+ITIG H L
Sbjct  61   AKQIREQLEEYAGVALHPLPYPHVEEEDDPLDPDLPYL-NPDDDLRILIKLDITIGNHLL  119

Query  343  IDQFEWDINDPFNSPEEFAARMTNDLSLSGEFTTAIAHSIREQSQLFTKSLYILSHPFDG  402
             DQFEWD+  P N+PEEFA +   DL LSGEF TAIAH+IREQ   + KSL         
Sbjct  120  TDQFEWDLLSPLNTPEEFAKQTCADLGLSGEFVTAIAHAIREQVLRYKKSLC--------  171

Query  403  RPIDDPDLKAAFLPSPLTSSFRPFQAAKEFTPYLYELNEAELERT  447
                                          TP L EL+E ELE+ 
Sbjct  172  ------------------------------TPKLEELSEEELEKR  186



Lambda      K        H        a         alpha
   0.313    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 944393648


Query= TCONS_00013256

Length=803
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428158 pfam04855, SNF5, SNF5 / SMARCB1 / INI1. SNF5 is a comp...  297     5e-97


>CDD:428158 pfam04855, SNF5, SNF5 / SMARCB1 / INI1.  SNF5 is a component 
of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling 
complex that regulates the transcription 
of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class 
complexes characterized so far. This family consists 
of the conserved region of SNF5, including a direct repeat 
motif. SNF5 is essential for the assembly promoter targeting 
and chromatin remodelling activity of the SWI-SNF complex. 
SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, 
actin-dependent regulator of chromatin, subfamily 
b, member 1, and also INI1 for integrase interactor 1. 
Loss-of function mutations in SNF5 are thought to contribute 
to oncogenesis in malignant rhabdoid tumors (MRTs).
Length=186

 Score = 297 bits (764),  Expect = 5e-97, Method: Composition-based stats.
 Identities = 99/225 (44%), Positives = 128/225 (57%), Gaps = 48/225 (21%)

Query  232  EQVEDLVPIRLDIDWEKIKIRDTFTWNLHDRVVSPDLFAEKLVEDLGLPLETCTPLVRMI  291
            E  E LVPIR+D+D +K ++RDTFTWNLH+ +++P+ FA+ L EDL LP E        I
Sbjct  1    ELPETLVPIRIDLDIDKYRLRDTFTWNLHETLITPEQFAQTLCEDLDLPNEPAPAFADQI  60

Query  292  SRSIQEQLADY---------YPQIYMEEDALDPNLPYSAYKNDEMRILIKLNITIGQHTL  342
            ++ I+EQL +Y         YP +  E+D LDP+LPY    +D++RILIKL+ITIG H L
Sbjct  61   AKQIREQLEEYAGVALHPLPYPHVEEEDDPLDPDLPYL-NPDDDLRILIKLDITIGNHLL  119

Query  343  IDQFEWDINDPFNSPEEFAARMTNDLSLSGEFTTAIAHSIREQSQLFTKSLYILSHPFDG  402
             DQFEWD+  P N+PEEFA +   DL LSGEF TAIAH+IREQ   + KSL         
Sbjct  120  TDQFEWDLLSPLNTPEEFAKQTCADLGLSGEFVTAIAHAIREQVLRYKKSLC--------  171

Query  403  RPIDDPDLKAAFLPSPLTSSFRPFQAAKEFTPYLYELNEAELERT  447
                                          TP L EL+E ELE+ 
Sbjct  172  ------------------------------TPKLEELSEEELEKR  186



Lambda      K        H        a         alpha
   0.313    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1031702768


Query= TCONS_00013259

Length=803
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428158 pfam04855, SNF5, SNF5 / SMARCB1 / INI1. SNF5 is a comp...  297     5e-97


>CDD:428158 pfam04855, SNF5, SNF5 / SMARCB1 / INI1.  SNF5 is a component 
of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling 
complex that regulates the transcription 
of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class 
complexes characterized so far. This family consists 
of the conserved region of SNF5, including a direct repeat 
motif. SNF5 is essential for the assembly promoter targeting 
and chromatin remodelling activity of the SWI-SNF complex. 
SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, 
actin-dependent regulator of chromatin, subfamily 
b, member 1, and also INI1 for integrase interactor 1. 
Loss-of function mutations in SNF5 are thought to contribute 
to oncogenesis in malignant rhabdoid tumors (MRTs).
Length=186

 Score = 297 bits (764),  Expect = 5e-97, Method: Composition-based stats.
 Identities = 99/225 (44%), Positives = 128/225 (57%), Gaps = 48/225 (21%)

Query  232  EQVEDLVPIRLDIDWEKIKIRDTFTWNLHDRVVSPDLFAEKLVEDLGLPLETCTPLVRMI  291
            E  E LVPIR+D+D +K ++RDTFTWNLH+ +++P+ FA+ L EDL LP E        I
Sbjct  1    ELPETLVPIRIDLDIDKYRLRDTFTWNLHETLITPEQFAQTLCEDLDLPNEPAPAFADQI  60

Query  292  SRSIQEQLADY---------YPQIYMEEDALDPNLPYSAYKNDEMRILIKLNITIGQHTL  342
            ++ I+EQL +Y         YP +  E+D LDP+LPY    +D++RILIKL+ITIG H L
Sbjct  61   AKQIREQLEEYAGVALHPLPYPHVEEEDDPLDPDLPYL-NPDDDLRILIKLDITIGNHLL  119

Query  343  IDQFEWDINDPFNSPEEFAARMTNDLSLSGEFTTAIAHSIREQSQLFTKSLYILSHPFDG  402
             DQFEWD+  P N+PEEFA +   DL LSGEF TAIAH+IREQ   + KSL         
Sbjct  120  TDQFEWDLLSPLNTPEEFAKQTCADLGLSGEFVTAIAHAIREQVLRYKKSLC--------  171

Query  403  RPIDDPDLKAAFLPSPLTSSFRPFQAAKEFTPYLYELNEAELERT  447
                                          TP L EL+E ELE+ 
Sbjct  172  ------------------------------TPKLEELSEEELEKR  186



Lambda      K        H        a         alpha
   0.313    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1031702768


Query= TCONS_00018715

Length=803
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428158 pfam04855, SNF5, SNF5 / SMARCB1 / INI1. SNF5 is a comp...  297     5e-97


>CDD:428158 pfam04855, SNF5, SNF5 / SMARCB1 / INI1.  SNF5 is a component 
of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling 
complex that regulates the transcription 
of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class 
complexes characterized so far. This family consists 
of the conserved region of SNF5, including a direct repeat 
motif. SNF5 is essential for the assembly promoter targeting 
and chromatin remodelling activity of the SWI-SNF complex. 
SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, 
actin-dependent regulator of chromatin, subfamily 
b, member 1, and also INI1 for integrase interactor 1. 
Loss-of function mutations in SNF5 are thought to contribute 
to oncogenesis in malignant rhabdoid tumors (MRTs).
Length=186

 Score = 297 bits (764),  Expect = 5e-97, Method: Composition-based stats.
 Identities = 99/225 (44%), Positives = 128/225 (57%), Gaps = 48/225 (21%)

Query  232  EQVEDLVPIRLDIDWEKIKIRDTFTWNLHDRVVSPDLFAEKLVEDLGLPLETCTPLVRMI  291
            E  E LVPIR+D+D +K ++RDTFTWNLH+ +++P+ FA+ L EDL LP E        I
Sbjct  1    ELPETLVPIRIDLDIDKYRLRDTFTWNLHETLITPEQFAQTLCEDLDLPNEPAPAFADQI  60

Query  292  SRSIQEQLADY---------YPQIYMEEDALDPNLPYSAYKNDEMRILIKLNITIGQHTL  342
            ++ I+EQL +Y         YP +  E+D LDP+LPY    +D++RILIKL+ITIG H L
Sbjct  61   AKQIREQLEEYAGVALHPLPYPHVEEEDDPLDPDLPYL-NPDDDLRILIKLDITIGNHLL  119

Query  343  IDQFEWDINDPFNSPEEFAARMTNDLSLSGEFTTAIAHSIREQSQLFTKSLYILSHPFDG  402
             DQFEWD+  P N+PEEFA +   DL LSGEF TAIAH+IREQ   + KSL         
Sbjct  120  TDQFEWDLLSPLNTPEEFAKQTCADLGLSGEFVTAIAHAIREQVLRYKKSLC--------  171

Query  403  RPIDDPDLKAAFLPSPLTSSFRPFQAAKEFTPYLYELNEAELERT  447
                                          TP L EL+E ELE+ 
Sbjct  172  ------------------------------TPKLEELSEEELEKR  186



Lambda      K        H        a         alpha
   0.313    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1031702768


Query= TCONS_00013260

Length=745
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428158 pfam04855, SNF5, SNF5 / SMARCB1 / INI1. SNF5 is a comp...  297     3e-97


>CDD:428158 pfam04855, SNF5, SNF5 / SMARCB1 / INI1.  SNF5 is a component 
of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling 
complex that regulates the transcription 
of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class 
complexes characterized so far. This family consists 
of the conserved region of SNF5, including a direct repeat 
motif. SNF5 is essential for the assembly promoter targeting 
and chromatin remodelling activity of the SWI-SNF complex. 
SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, 
actin-dependent regulator of chromatin, subfamily 
b, member 1, and also INI1 for integrase interactor 1. 
Loss-of function mutations in SNF5 are thought to contribute 
to oncogenesis in malignant rhabdoid tumors (MRTs).
Length=186

 Score = 297 bits (762),  Expect = 3e-97, Method: Composition-based stats.
 Identities = 99/225 (44%), Positives = 128/225 (57%), Gaps = 48/225 (21%)

Query  232  EQVEDLVPIRLDIDWEKIKIRDTFTWNLHDRVVSPDLFAEKLVEDLGLPLETCTPLVRMI  291
            E  E LVPIR+D+D +K ++RDTFTWNLH+ +++P+ FA+ L EDL LP E        I
Sbjct  1    ELPETLVPIRIDLDIDKYRLRDTFTWNLHETLITPEQFAQTLCEDLDLPNEPAPAFADQI  60

Query  292  SRSIQEQLADY---------YPQIYMEEDALDPNLPYSAYKNDEMRILIKLNITIGQHTL  342
            ++ I+EQL +Y         YP +  E+D LDP+LPY    +D++RILIKL+ITIG H L
Sbjct  61   AKQIREQLEEYAGVALHPLPYPHVEEEDDPLDPDLPYL-NPDDDLRILIKLDITIGNHLL  119

Query  343  IDQFEWDINDPFNSPEEFAARMTNDLSLSGEFTTAIAHSIREQSQLFTKSLYILSHPFDG  402
             DQFEWD+  P N+PEEFA +   DL LSGEF TAIAH+IREQ   + KSL         
Sbjct  120  TDQFEWDLLSPLNTPEEFAKQTCADLGLSGEFVTAIAHAIREQVLRYKKSLC--------  171

Query  403  RPIDDPDLKAAFLPSPLTSSFRPFQAAKEFTPYLYELNEAELERT  447
                                          TP L EL+E ELE+ 
Sbjct  172  ------------------------------TPKLEELSEEELEKR  186



Lambda      K        H        a         alpha
   0.313    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 947303952


Query= TCONS_00018716

Length=759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428158 pfam04855, SNF5, SNF5 / SMARCB1 / INI1. SNF5 is a comp...  297     4e-97


>CDD:428158 pfam04855, SNF5, SNF5 / SMARCB1 / INI1.  SNF5 is a component 
of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling 
complex that regulates the transcription 
of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class 
complexes characterized so far. This family consists 
of the conserved region of SNF5, including a direct repeat 
motif. SNF5 is essential for the assembly promoter targeting 
and chromatin remodelling activity of the SWI-SNF complex. 
SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, 
actin-dependent regulator of chromatin, subfamily 
b, member 1, and also INI1 for integrase interactor 1. 
Loss-of function mutations in SNF5 are thought to contribute 
to oncogenesis in malignant rhabdoid tumors (MRTs).
Length=186

 Score = 297 bits (762),  Expect = 4e-97, Method: Composition-based stats.
 Identities = 99/225 (44%), Positives = 128/225 (57%), Gaps = 48/225 (21%)

Query  232  EQVEDLVPIRLDIDWEKIKIRDTFTWNLHDRVVSPDLFAEKLVEDLGLPLETCTPLVRMI  291
            E  E LVPIR+D+D +K ++RDTFTWNLH+ +++P+ FA+ L EDL LP E        I
Sbjct  1    ELPETLVPIRIDLDIDKYRLRDTFTWNLHETLITPEQFAQTLCEDLDLPNEPAPAFADQI  60

Query  292  SRSIQEQLADY---------YPQIYMEEDALDPNLPYSAYKNDEMRILIKLNITIGQHTL  342
            ++ I+EQL +Y         YP +  E+D LDP+LPY    +D++RILIKL+ITIG H L
Sbjct  61   AKQIREQLEEYAGVALHPLPYPHVEEEDDPLDPDLPYL-NPDDDLRILIKLDITIGNHLL  119

Query  343  IDQFEWDINDPFNSPEEFAARMTNDLSLSGEFTTAIAHSIREQSQLFTKSLYILSHPFDG  402
             DQFEWD+  P N+PEEFA +   DL LSGEF TAIAH+IREQ   + KSL         
Sbjct  120  TDQFEWDLLSPLNTPEEFAKQTCADLGLSGEFVTAIAHAIREQVLRYKKSLC--------  171

Query  403  RPIDDPDLKAAFLPSPLTSSFRPFQAAKEFTPYLYELNEAELERT  447
                                          TP L EL+E ELE+ 
Sbjct  172  ------------------------------TPKLEELSEEELEKR  186



Lambda      K        H        a         alpha
   0.313    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 967676080


Query= TCONS_00013262

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00018717

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00018718

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466319 pfam20168, PDS5, Sister chromatid cohesion protein PDS...  371     3e-117


>CDD:466319 pfam20168, PDS5, Sister chromatid cohesion protein PDS5 protein. 
 This entry represents the Sister chromatid cohesion protein 
PDS5. The large PDS5 molecule is exclusively alpha helical, 
composed of a large number of HEAT-like repeats and helical 
extensions/additions that deviate from the HEAT repeat 
pattern.
Length=1051

 Score = 371 bits (954),  Expect = 3e-117, Method: Composition-based stats.
 Identities = 168/518 (32%), Positives = 241/518 (47%), Gaps = 141/518 (27%)

Query  1    MTDLDQPDSLIIPLFTTCFDIVSGSSKASTGEEIAKNVEFDMTRLLVTVIDESPVLAPDV  60
            + DL   D LI  LF T FD+VS           +K VE  M  +L  +IDES  L  +V
Sbjct  114  ILDLPDADDLITELFRTFFDLVSRPH--------SKKVENFMLDILSELIDESDSLPQEV  165

Query  61   VDIIVAQFLRVDPRVLEPLNKRSRKADTLVDSKQGTLLLKDYPPAYNMAKAICQACPERM  120
            +D+I+AQFLR                             K+ PPA+ +A  +C AC +++
Sbjct  166  LDLILAQFLR--------------------------KKKKENPPAFRLAVDVCNACADKL  199

Query  121  TSHISQYFNNVIIDASGSGATNGSSKHHRKPNLDESDEEGEDVKELSKAHRLIRELWRAC  180
              ++ QYF+ ++++                        +  D++ L KAH LI ELWR  
Sbjct  200  QRYVCQYFSEILLE-----------------------GDESDLELLKKAHDLILELWRIA  236

Query  181  PDVLQNVVPQLEAELSAESVSLRLLATQTIGDLTAGIGVAGPPPPPPMDPAGFPPVTLAE  240
            P +L NV+PQLE EL A+ V +RLLAT+T+G + +  G                   LA 
Sbjct  237  PSLLLNVIPQLEEELKADDVDIRLLATETLGRMFSEPG----------------GSDLA-  279

Query  241  YAQTIPQPNVLVKPLSPKPFSQAHSSTYESFLSRRFDKSASVRAAWVTVIGRILLTSAGG  300
                                 + + S ++++L R  DKS +VR AWV    +ILL     
Sbjct  280  ---------------------KQYPSLWKAWLGRFNDKSVAVRIAWVEAAKQILLNHPDL  318

Query  301  SGLSENEQQTLIENLTSMLRDADEKVRLAAVDAVGMFGLSDVVSKLGLGGGFSTSDSLLA  360
                      ++E L   L D DEKVRLAAV A+G      ++  +        S+ LL 
Sbjct  319  R-------SEILEALKDRLLDPDEKVRLAAVKAIGDLDYETLLHVV--------SEKLLK  363

Query  361  VLAERVKDRKSQVRDHATKTLARIWAVAAGDIEHGNEQVVSLLKDGPSKIFDAYYTNDPE  420
             LAER++D+K  VR  A KTLA+++ VA G+IE G+E+ +      P+KI   YY NDPE
Sbjct  364  TLAERLRDKKPSVRKEALKTLAKLYNVAYGEIEEGDEEAIEKFGWIPNKILHLYYINDPE  423

Query  421  IHILIDRVLFEILLPLNYPPIKPKLSRSSSSQSQKQKESQSAEADSDADIDKIRVRRILT  480
            I  L++RVLFE LLP                                   D+ RV+R+LT
Sbjct  424  IRALVERVLFEYLLPALLD-------------------------------DEERVKRLLT  452

Query  481  LLAGLDDKAKKVFYAMQGRQISVRNFVNFYLKACEEYN  518
            LL+ LD+KAKK F A+  RQ  ++  +  +L  CE+YN
Sbjct  453  LLSHLDEKAKKAFNAILKRQSRLQKALRKFLDLCEKYN  490



Lambda      K        H        a         alpha
   0.316    0.133    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 744225144


Query= TCONS_00018719

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466319 pfam20168, PDS5, Sister chromatid cohesion protein PDS...  371     3e-117


>CDD:466319 pfam20168, PDS5, Sister chromatid cohesion protein PDS5 protein. 
 This entry represents the Sister chromatid cohesion protein 
PDS5. The large PDS5 molecule is exclusively alpha helical, 
composed of a large number of HEAT-like repeats and helical 
extensions/additions that deviate from the HEAT repeat 
pattern.
Length=1051

 Score = 371 bits (954),  Expect = 3e-117, Method: Composition-based stats.
 Identities = 168/518 (32%), Positives = 241/518 (47%), Gaps = 141/518 (27%)

Query  1    MTDLDQPDSLIIPLFTTCFDIVSGSSKASTGEEIAKNVEFDMTRLLVTVIDESPVLAPDV  60
            + DL   D LI  LF T FD+VS           +K VE  M  +L  +IDES  L  +V
Sbjct  114  ILDLPDADDLITELFRTFFDLVSRPH--------SKKVENFMLDILSELIDESDSLPQEV  165

Query  61   VDIIVAQFLRVDPRVLEPLNKRSRKADTLVDSKQGTLLLKDYPPAYNMAKAICQACPERM  120
            +D+I+AQFLR                             K+ PPA+ +A  +C AC +++
Sbjct  166  LDLILAQFLR--------------------------KKKKENPPAFRLAVDVCNACADKL  199

Query  121  TSHISQYFNNVIIDASGSGATNGSSKHHRKPNLDESDEEGEDVKELSKAHRLIRELWRAC  180
              ++ QYF+ ++++                        +  D++ L KAH LI ELWR  
Sbjct  200  QRYVCQYFSEILLE-----------------------GDESDLELLKKAHDLILELWRIA  236

Query  181  PDVLQNVVPQLEAELSAESVSLRLLATQTIGDLTAGIGVAGPPPPPPMDPAGFPPVTLAE  240
            P +L NV+PQLE EL A+ V +RLLAT+T+G + +  G                   LA 
Sbjct  237  PSLLLNVIPQLEEELKADDVDIRLLATETLGRMFSEPG----------------GSDLA-  279

Query  241  YAQTIPQPNVLVKPLSPKPFSQAHSSTYESFLSRRFDKSASVRAAWVTVIGRILLTSAGG  300
                                 + + S ++++L R  DKS +VR AWV    +ILL     
Sbjct  280  ---------------------KQYPSLWKAWLGRFNDKSVAVRIAWVEAAKQILLNHPDL  318

Query  301  SGLSENEQQTLIENLTSMLRDADEKVRLAAVDAVGMFGLSDVVSKLGLGGGFSTSDSLLA  360
                      ++E L   L D DEKVRLAAV A+G      ++  +        S+ LL 
Sbjct  319  R-------SEILEALKDRLLDPDEKVRLAAVKAIGDLDYETLLHVV--------SEKLLK  363

Query  361  VLAERVKDRKSQVRDHATKTLARIWAVAAGDIEHGNEQVVSLLKDGPSKIFDAYYTNDPE  420
             LAER++D+K  VR  A KTLA+++ VA G+IE G+E+ +      P+KI   YY NDPE
Sbjct  364  TLAERLRDKKPSVRKEALKTLAKLYNVAYGEIEEGDEEAIEKFGWIPNKILHLYYINDPE  423

Query  421  IHILIDRVLFEILLPLNYPPIKPKLSRSSSSQSQKQKESQSAEADSDADIDKIRVRRILT  480
            I  L++RVLFE LLP                                   D+ RV+R+LT
Sbjct  424  IRALVERVLFEYLLPALLD-------------------------------DEERVKRLLT  452

Query  481  LLAGLDDKAKKVFYAMQGRQISVRNFVNFYLKACEEYN  518
            LL+ LD+KAKK F A+  RQ  ++  +  +L  CE+YN
Sbjct  453  LLSHLDEKAKKAFNAILKRQSRLQKALRKFLDLCEKYN  490



Lambda      K        H        a         alpha
   0.316    0.133    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 744225144


Query= TCONS_00013265

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            111     2e-27


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 111 bits (279),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 73/336 (22%), Positives = 129/336 (38%), Gaps = 41/336 (12%)

Query  122  SSVFSTATAVTAKEYHVSTEVMTLATSLVVFGFALGPIVWAPMSELYGRRLPLFLGYAIF  181
            S +      + A++  +S   + L  +L   G+AL   +   +S+ +GRR  L +G  +F
Sbjct  13   SLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLF  72

Query  182  VIFQIPVAVAQNVQTIMICRFLIGVFGCSPLAVVGGAMADFWDPIDRAVAIALFSAATFV  241
             +  + +  A ++  +++ R L G+   +        +AD++ P +R  A+ L SA   +
Sbjct  73   ALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGL  132

Query  242  GPTLGPIIGGFITESYLGWRWTAWITMIPSAAFGTLAFFIVPETYGPVILQRRAARLRRE  301
            G  LGP++GG +  S  GWR    I  I S     L     P                  
Sbjct  133  GAALGPLLGGLLA-SLFGWRAAFLILAILSLLAAVLLLLPRPPP----------------  175

Query  302  TGNWALHSLLDESRPTASEIVNKYLLRPIQMLFLEPILLLITIYLALVYGILYLFFEAYP  361
                      +  RP  +E     L+   + L  +P+L L+   L   +    L      
Sbjct  176  ----------ESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLP-  224

Query  362  VSFMEVRGWTNGGIAGLPFIGILLGVVCGVALIIWQTKTRFARKLAKHGRVVPEERLVPM  421
              + EV G +      L  +G LLG +  + L       R + +L +        RL+  
Sbjct  225  -LYQEVLGLSALLAGLLLGLGGLLGAIGRLLL------GRLSDRLGRRR------RLLLA  271

Query  422  MVASVLLPAGLFWFGWTSSPHMSWVPQVLAGIPIGM  457
            ++  +L   GL     T S     +  +L G   G+
Sbjct  272  LLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGL  307



Lambda      K        H        a         alpha
   0.326    0.140    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 718819868


Query= TCONS_00013266

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            113     3e-28


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 113 bits (285),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 73/336 (22%), Positives = 129/336 (38%), Gaps = 41/336 (12%)

Query  122  SSVFSTATAVTAKEYHVSTEVMTLATSLVVFGFALGPIVWAPMSELYGRRLPLFLGYAIF  181
            S +      + A++  +S   + L  +L   G+AL   +   +S+ +GRR  L +G  +F
Sbjct  13   SLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLF  72

Query  182  VIFQIPVAVAQNVQTIMICRFLIGVFGCSPLAVVGGAMADFWDPIDRAVAIALFSAATFV  241
             +  + +  A ++  +++ R L G+   +        +AD++ P +R  A+ L SA   +
Sbjct  73   ALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGL  132

Query  242  GPTLGPIIGGFITESYLGWRWTAWITMIPSAAFGTLAFFIVPETYGPVILQRRAARLRRE  301
            G  LGP++GG +  S  GWR    I  I S     L     P                  
Sbjct  133  GAALGPLLGGLLA-SLFGWRAAFLILAILSLLAAVLLLLPRPPP----------------  175

Query  302  TGNWALHSLLDESRPTASEIVNKYLLRPIQMLFLEPILLLITIYLALVYGILYLFFEAYP  361
                      +  RP  +E     L+   + L  +P+L L+   L   +    L      
Sbjct  176  ----------ESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLP-  224

Query  362  VSFMEVRGWTNGGIAGLPFIGILLGVVCGVALIIWQTKTRFARKLAKHGRVVPEERLVPM  421
              + EV G +      L  +G LLG +  + L       R + +L +        RL+  
Sbjct  225  -LYQEVLGLSALLAGLLLGLGGLLGAIGRLLL------GRLSDRLGRRR------RLLLA  271

Query  422  MVASVLLPAGLFWFGWTSSPHMSWVPQVLAGIPIGM  457
            ++  +L   GL     T S     +  +L G   G+
Sbjct  272  LLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGL  307



Lambda      K        H        a         alpha
   0.325    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690414096


Query= TCONS_00013267

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00013268

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00013270

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397480 pfam03435, Sacchrp_dh_NADP, Saccharopine dehydrogenase...  62.2    2e-12


>CDD:397480 pfam03435, Sacchrp_dh_NADP, Saccharopine dehydrogenase NADP binding 
domain.  This family contains the NADP binding domain 
of saccharopine dehydrogenase. In some organisms this enzyme 
is found as a bifunctional polypeptide with lysine ketoglutarate 
reductase. The saccharopine dehydrogenase can also function 
as a saccharopine reductase.
Length=120

 Score = 62.2 bits (152),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 26/124 (21%), Positives = 51/124 (41%), Gaps = 10/124 (8%)

Query  16   GYTGRLCAEHIVKNLPTNLKWALAGRSVQKIEVIAKELKTLNPDRAAPEILAVQLNRQEL  75
            G  G+  A  + ++     +  +A R+++K + +A +L  +   R     +        L
Sbjct  7    GSVGQGVAPLLARHFD-VDRITVADRTLEKAQALAAKLGGV---RFIAVAVDADNYEAVL  62

Query  76   EPLVQRTKVIINCVGPYHLYSTPVVEACANHGTHYVDATGETPWIREIIEKYHDVAKSNG  135
              L++   +++N   P    S  V++AC   G HYVD +     +       H+ AK  G
Sbjct  63   AALLKEGDLVVNLSPPT--LSLDVLKACIETGVHYVDTSYLREAVL----ALHEKAKDAG  116

Query  136  AIII  139
               +
Sbjct  117  VTAV  120



Lambda      K        H        a         alpha
   0.319    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00013269

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397480 pfam03435, Sacchrp_dh_NADP, Saccharopine dehydrogenase...  62.2    2e-12


>CDD:397480 pfam03435, Sacchrp_dh_NADP, Saccharopine dehydrogenase NADP binding 
domain.  This family contains the NADP binding domain 
of saccharopine dehydrogenase. In some organisms this enzyme 
is found as a bifunctional polypeptide with lysine ketoglutarate 
reductase. The saccharopine dehydrogenase can also function 
as a saccharopine reductase.
Length=120

 Score = 62.2 bits (152),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 26/124 (21%), Positives = 51/124 (41%), Gaps = 10/124 (8%)

Query  16   GYTGRLCAEHIVKNLPTNLKWALAGRSVQKIEVIAKELKTLNPDRAAPEILAVQLNRQEL  75
            G  G+  A  + ++     +  +A R+++K + +A +L  +   R     +        L
Sbjct  7    GSVGQGVAPLLARHFD-VDRITVADRTLEKAQALAAKLGGV---RFIAVAVDADNYEAVL  62

Query  76   EPLVQRTKVIINCVGPYHLYSTPVVEACANHGTHYVDATGETPWIREIIEKYHDVAKSNG  135
              L++   +++N   P    S  V++AC   G HYVD +     +       H+ AK  G
Sbjct  63   AALLKEGDLVVNLSPPT--LSLDVLKACIETGVHYVDTSYLREAVL----ALHEKAKDAG  116

Query  136  AIII  139
               +
Sbjct  117  VTAV  120



Lambda      K        H        a         alpha
   0.319    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00018720

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397480 pfam03435, Sacchrp_dh_NADP, Saccharopine dehydrogenase...  63.0    1e-13


>CDD:397480 pfam03435, Sacchrp_dh_NADP, Saccharopine dehydrogenase NADP binding 
domain.  This family contains the NADP binding domain 
of saccharopine dehydrogenase. In some organisms this enzyme 
is found as a bifunctional polypeptide with lysine ketoglutarate 
reductase. The saccharopine dehydrogenase can also function 
as a saccharopine reductase.
Length=120

 Score = 63.0 bits (154),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 26/124 (21%), Positives = 51/124 (41%), Gaps = 10/124 (8%)

Query  16   GYTGRLCAEHIVKNLPTNLKWALAGRSVQKIEVIAKELKTLNPDRAAPEILAVQLNRQEL  75
            G  G+  A  + ++     +  +A R+++K + +A +L  +   R     +        L
Sbjct  7    GSVGQGVAPLLARHFD-VDRITVADRTLEKAQALAAKLGGV---RFIAVAVDADNYEAVL  62

Query  76   EPLVQRTKVIINCVGPYHLYSTPVVEACANHGTHYVDATGETPWIREIIEKYHDVAKSNG  135
              L++   +++N   P    S  V++AC   G HYVD +     +       H+ AK  G
Sbjct  63   AALLKEGDLVVNLSPPT--LSLDVLKACIETGVHYVDTSYLREAVL----ALHEKAKDAG  116

Query  136  AIII  139
               +
Sbjct  117  VTAV  120



Lambda      K        H        a         alpha
   0.318    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00018721

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397480 pfam03435, Sacchrp_dh_NADP, Saccharopine dehydrogenase...  60.7    7e-13


>CDD:397480 pfam03435, Sacchrp_dh_NADP, Saccharopine dehydrogenase NADP binding 
domain.  This family contains the NADP binding domain 
of saccharopine dehydrogenase. In some organisms this enzyme 
is found as a bifunctional polypeptide with lysine ketoglutarate 
reductase. The saccharopine dehydrogenase can also function 
as a saccharopine reductase.
Length=120

 Score = 60.7 bits (148),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 26/124 (21%), Positives = 51/124 (41%), Gaps = 10/124 (8%)

Query  16   GYTGRLCAEHIVKNLPTNLKWALAGRSVQKIEVIAKELKTLNPDRAAPEILAVQLNRQEL  75
            G  G+  A  + ++     +  +A R+++K + +A +L  +   R     +        L
Sbjct  7    GSVGQGVAPLLARHFD-VDRITVADRTLEKAQALAAKLGGV---RFIAVAVDADNYEAVL  62

Query  76   EPLVQRTKVIINCVGPYHLYSTPVVEACANHGTHYVDATGETPWIREIIEKYHDVAKSNG  135
              L++   +++N   P    S  V++AC   G HYVD +     +       H+ AK  G
Sbjct  63   AALLKEGDLVVNLSPPT--LSLDVLKACIETGVHYVDTSYLREAVL----ALHEKAKDAG  116

Query  136  AIII  139
               +
Sbjct  117  VTAV  120



Lambda      K        H        a         alpha
   0.317    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00013271

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397480 pfam03435, Sacchrp_dh_NADP, Saccharopine dehydrogenase...  62.2    2e-12


>CDD:397480 pfam03435, Sacchrp_dh_NADP, Saccharopine dehydrogenase NADP binding 
domain.  This family contains the NADP binding domain 
of saccharopine dehydrogenase. In some organisms this enzyme 
is found as a bifunctional polypeptide with lysine ketoglutarate 
reductase. The saccharopine dehydrogenase can also function 
as a saccharopine reductase.
Length=120

 Score = 62.2 bits (152),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 26/124 (21%), Positives = 51/124 (41%), Gaps = 10/124 (8%)

Query  16   GYTGRLCAEHIVKNLPTNLKWALAGRSVQKIEVIAKELKTLNPDRAAPEILAVQLNRQEL  75
            G  G+  A  + ++     +  +A R+++K + +A +L  +   R     +        L
Sbjct  7    GSVGQGVAPLLARHFD-VDRITVADRTLEKAQALAAKLGGV---RFIAVAVDADNYEAVL  62

Query  76   EPLVQRTKVIINCVGPYHLYSTPVVEACANHGTHYVDATGETPWIREIIEKYHDVAKSNG  135
              L++   +++N   P    S  V++AC   G HYVD +     +       H+ AK  G
Sbjct  63   AALLKEGDLVVNLSPPT--LSLDVLKACIETGVHYVDTSYLREAVL----ALHEKAKDAG  116

Query  136  AIII  139
               +
Sbjct  117  VTAV  120



Lambda      K        H        a         alpha
   0.319    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00013272

Length=427


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00018722

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        94.3    3e-26


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 94.3 bits (235),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 36/93 (39%), Positives = 53/93 (57%), Gaps = 1/93 (1%)

Query  82   SQLPSYQTTVIGLISGAVGPFSNAPIDTIKTRLQKTRAEPGQSAINRIMVIAKDMFKQEG  141
            S+L    + + G I+GA+      P+D +KTRLQ  +   G+S    I+   K ++K+EG
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQ-VQGGSGKSKGRGILDCFKKIYKEEG  59

Query  142  ARAFYKGITPRVMRVAPGQAVTFTVYEFLKGKL  174
             R  YKG+ P ++RVAP  A+ F  YE LK  L
Sbjct  60   IRGLYKGLLPNLLRVAPAAAIYFGTYETLKRLL  92


 Score = 70.0 bits (172),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 31/74 (42%), Gaps = 5/74 (7%)

Query  1   MEVVKIRLQAQHHSLADPLDTPKYRSAPHALFTVIREEGFSALYRGVSLTALRQGTNQAA  60
           ++VVK RLQ Q  S        K R        + +EEG   LY+G+    LR     A 
Sbjct  26  LDVVKTRLQVQGGSG-----KSKGRGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAI  80

Query  61  NFTAYTELKAFLQR  74
            F  Y  LK  L +
Sbjct  81  YFGTYETLKRLLLK  94



Lambda      K        H        a         alpha
   0.318    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00018723

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461457 pfam04857, CAF1, CAF1 family ribonuclease. The major p...  345     6e-117


>CDD:461457 pfam04857, CAF1, CAF1 family ribonuclease.  The major pathways 
of mRNA turnover in eukaryotes initiate with shortening of 
the polyA tail. CAF1 encodes a critical component of the major 
cytoplasmic deadenylase in yeast. Both Caf1p is required 
for normal mRNA deadenylation in vivo and localizes to the 
cytoplasm. Caf1p copurifies with a Ccr4p-dependent polyA-specific 
exonuclease activity. Some members of this family include 
and inserted RNA binding domain pfam01424. This family of 
proteins is related to other exonucleases pfam00929 (Bateman 
A pers. obs.). The crystal structure of Saccharomyces cerevisiae 
Pop2 has been resolved at 2.3 Angstrom resolution.
Length=375

 Score = 345 bits (887),  Expect = 6e-117, Method: Composition-based stats.
 Identities = 126/437 (29%), Positives = 202/437 (46%), Gaps = 74/437 (17%)

Query  3    VTAQTFPYHLPRILDDLATCCFVSMDFEFSGIATTSSNPTRKPQSLQARYEEVKNSADKY  62
            VT   F   LP IL  +    FV++D EF+G+ +     +    + + RY +++++A+++
Sbjct  1    VTRSNFKELLPEILKAIKEADFVAIDLEFTGLGSPWRKSSLF-DTPEERYLKLRDAAERF  59

Query  63   QILQVGLTICHEDTKNASYTLKPYNVNLNPIIDRRLEVERGWSMQSSAIEFLLENKFSID  122
             ILQ GL    ED + + YT KPYN  L P  +   + +  +S Q+S+++FL ++ F  +
Sbjct  60   SILQFGLCCFREDEEKSKYTAKPYNFYLFPRTELDPDRD--FSCQASSLQFLAKHGFDFN  117

Query  123  SILKHGVQYLSREEEKRAIANAIERRDRVATHTLIDVKETEHESLAFLKAVRRVVDDWLA  182
             +   G+ YLSR EE++      ER+      +  D+   + E   F++ VR  + +WL 
Sbjct  118  KLFYEGIPYLSRAEEEKLRERLEERQQ----ASPSDIPLLDVEDKEFVERVRSKIKEWLD  173

Query  183  LGATREEYLNIPPPTRLGVSQSSKSLPSALNRFQKRLVHQLIEVEYPSLVAISRPDFIQI  242
             G  + E LNI  P                   Q+ L HQL+ V    L++  +   +Q+
Sbjct  174  SGEDKGEKLNIDNPVSRL-------------LLQQLLKHQLVRVLLVELLSRGKQKVVQV  220

Query  243  IDYNEERERSVR-EQRVKKIQERTWKQTGFRWVAEALAGGDLTNLHSGYFIGIMASSAAV  301
            +  + E E  +  E++  + +ER     GFR V +AL+                      
Sbjct  221  VKKSSEDEELLEKEEKKDEEEERLESAVGFRLVFDALSK---------------------  259

Query  302  EPKYPLNEFSDKLKQRLKEHRPVLVGHNIFSDLIYFCRCFFGPLPSKVEEFQSMAHELFP  361
                                R  +VGHN   DL++  + F+GPLP  +EEF+++ HELFP
Sbjct  260  -------------------SRKPIVGHNGLLDLLFLYQQFYGPLPETLEEFKALIHELFP  300

Query  362  VLMDTKYMATHN--CGSINPRSSLSELNENLAK---------KAIPKISIHPQHSKYTTQ  410
             + DTKY+AT +       P SSL EL E L K             +   H + SKY  +
Sbjct  301  GIYDTKYLATTDAEFKVRLPSSSLEELFEKLCKENFSSPSVETPPFESDYHDESSKYGGK  360

Query  411  KIDHEAGYDSLLTAQVF  427
               HEAGYD+ +T  VF
Sbjct  361  A--HEAGYDAYMTGYVF  375



Lambda      K        H        a         alpha
   0.318    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00013274

Length=599
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461457 pfam04857, CAF1, CAF1 family ribonuclease. The major p...  346     3e-115


>CDD:461457 pfam04857, CAF1, CAF1 family ribonuclease.  The major pathways 
of mRNA turnover in eukaryotes initiate with shortening of 
the polyA tail. CAF1 encodes a critical component of the major 
cytoplasmic deadenylase in yeast. Both Caf1p is required 
for normal mRNA deadenylation in vivo and localizes to the 
cytoplasm. Caf1p copurifies with a Ccr4p-dependent polyA-specific 
exonuclease activity. Some members of this family include 
and inserted RNA binding domain pfam01424. This family of 
proteins is related to other exonucleases pfam00929 (Bateman 
A pers. obs.). The crystal structure of Saccharomyces cerevisiae 
Pop2 has been resolved at 2.3 Angstrom resolution.
Length=375

 Score = 346 bits (889),  Expect = 3e-115, Method: Composition-based stats.
 Identities = 127/446 (28%), Positives = 203/446 (46%), Gaps = 74/446 (17%)

Query  3    VTAQTFPYHLPRILDDLATCCFVSMDFEFSGIATTSSNPTRKPQSLQARYEEVKNSADKY  62
            VT   F   LP IL  +    FV++D EF+G+ +     +    + + RY +++++A+++
Sbjct  1    VTRSNFKELLPEILKAIKEADFVAIDLEFTGLGSPWRKSSLF-DTPEERYLKLRDAAERF  59

Query  63   QILQVGLTICHEDTKNASYTLKPYNVNLNPIIDRRLEVERGWSMQSSAIEFLLENKFSID  122
             ILQ GL    ED + + YT KPYN  L P  +   + +  +S Q+S+++FL ++ F  +
Sbjct  60   SILQFGLCCFREDEEKSKYTAKPYNFYLFPRTELDPDRD--FSCQASSLQFLAKHGFDFN  117

Query  123  SILKHGVQYLSREEEKRAIANAIERRDRVATHTLIDVKETEHESLAFLKAVRRVVDDWLA  182
             +   G+ YLSR EE++      ER+      +  D+   + E   F++ VR  + +WL 
Sbjct  118  KLFYEGIPYLSRAEEEKLRERLEERQQ----ASPSDIPLLDVEDKEFVERVRSKIKEWLD  173

Query  183  LGATREEYLNIPPPTRLGVSQSSKSLPSALNRFQKRLVHQLIEVEYPSLVAISRPDFIQI  242
             G  + E LNI  P                   Q+ L HQL+ V    L++  +   +Q+
Sbjct  174  SGEDKGEKLNIDNPVSRL-------------LLQQLLKHQLVRVLLVELLSRGKQKVVQV  220

Query  243  IDYNEERERSVR-EQRVKKIQERTWKQTGFRWVAEALAGGDLTNLHSGYFIGIMASSAAV  301
            +  + E E  +  E++  + +ER     GFR V +AL+                      
Sbjct  221  VKKSSEDEELLEKEEKKDEEEERLESAVGFRLVFDALSK---------------------  259

Query  302  EPKYPLNEFSDKLKQRLKEHRPVLVGHNIFSDLIYFCRCFFGPLPSKVEEFQSMAHELFP  361
                                R  +VGHN   DL++  + F+GPLP  +EEF+++ HELFP
Sbjct  260  -------------------SRKPIVGHNGLLDLLFLYQQFYGPLPETLEEFKALIHELFP  300

Query  362  VLMDTKYMATHN--CGSINPRSSLSELNENLAKKAIPKISAHDFLDRQFELMAKKTTGIH  419
             + DTKY+AT +       P SSL EL E L K+     S                   H
Sbjct  301  GIYDTKYLATTDAEFKVRLPSSSLEELFEKLCKE--NFSSPSVETPPFES-------DYH  351

Query  420  PQHSKYTTQKIDHEAGYDSLLTAQVF  445
             + SKY  +   HEAGYD+ +T  VF
Sbjct  352  DESSKYGGKA--HEAGYDAYMTGYVF  375



Lambda      K        H        a         alpha
   0.317    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 757674996


Query= TCONS_00018724

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433336 pfam13593, SBF_like, SBF-like CPA transporter family (...  253     3e-82


>CDD:433336 pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137). 
 These family members are 7TM putative membrane transporter 
proteins. The family is similar to the SBF family of bile-acid 
symporters, pfam01758.
Length=313

 Score = 253 bits (648),  Expect = 3e-82, Method: Composition-based stats.
 Identities = 116/347 (33%), Positives = 164/347 (47%), Gaps = 51/347 (15%)

Query  36   QWLLIGIGVACVLAYYFPNVAKHGGVIRAEYSILYGAMAIIFLTSGLSIPRQKLLTHLLN  95
            QW L+G+ +A +LA   P     GG IRAEY I YG +A+IF  SGL +  ++LL  L N
Sbjct  1    QWFLLGLVLAILLASLLPVFGAAGGPIRAEYVITYG-VALIFFLSGLRLSTEELLAGLRN  59

Query  96   WRLHFLVQVFSFIFIPALTLAVVHIILAGDAHGHIDRAVLAGYIFTACIPTTIASNVVMT  155
            WRLH  VQ+F+F+  P L L +  ++ A      +   +L G++  A +PTT++S+V MT
Sbjct  60   WRLHLFVQLFTFVLFPLLGLGLSSLLPA-----ALPPELLIGFLLLAALPTTVSSSVAMT  114

Query  156  RSAGGDDAAALVEVVIANFLGPFITAGWTVTLLPTTAEFDPWRQANGDLSEMYKDVFKQL  215
              AGG+ AAA+    I N LG F+T      LL             G     Y  V K+L
Sbjct  115  SQAGGNVAAAVCNASIGNLLGVFLTPALVGLLLGG-----------GGAGIDYGAVLKKL  163

Query  216  GLSALLPLVIGQLVRWAWPEQTERVMQTYRIAKLGSACLLLIVCVLF-------------  262
            GL  LLPLV+GQL+R  +P+ T+R      + K+ S  +LLIV   F             
Sbjct  164  GLQVLLPLVLGQLLRPWFPKWTKRH--KKLLKKVDSGVILLIVYTSFSTAFVQGAFHSVS  221

Query  263  ----VVFFNIALYIALTAVCFVLSRPPEVLSVNRFGMRHIFKRITPEETIAVCFCGPAKS  318
                +V FN+ LY+    +                G        + E+ IA+ FCG  KS
Sbjct  222  HSILLVIFNVGLYLLAVVLGATWFLA------RLLGF-------SREDEIAILFCGSKKS  268

Query  319  TALGIPLLYAMWSPVDLYTKARTSVPVLLYTTEQICIAHFFVHALQR  365
             ALG+PL   +             +P+LLY   Q+ +       L R
Sbjct  269  LALGVPLASVL--FGGNPQLGLILLPLLLYHQIQLMVCSVLAPRLAR  313



Lambda      K        H        a         alpha
   0.327    0.140    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00013273

Length=581
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461457 pfam04857, CAF1, CAF1 family ribonuclease. The major p...  349     8e-117


>CDD:461457 pfam04857, CAF1, CAF1 family ribonuclease.  The major pathways 
of mRNA turnover in eukaryotes initiate with shortening of 
the polyA tail. CAF1 encodes a critical component of the major 
cytoplasmic deadenylase in yeast. Both Caf1p is required 
for normal mRNA deadenylation in vivo and localizes to the 
cytoplasm. Caf1p copurifies with a Ccr4p-dependent polyA-specific 
exonuclease activity. Some members of this family include 
and inserted RNA binding domain pfam01424. This family of 
proteins is related to other exonucleases pfam00929 (Bateman 
A pers. obs.). The crystal structure of Saccharomyces cerevisiae 
Pop2 has been resolved at 2.3 Angstrom resolution.
Length=375

 Score = 349 bits (898),  Expect = 8e-117, Method: Composition-based stats.
 Identities = 126/437 (29%), Positives = 202/437 (46%), Gaps = 74/437 (17%)

Query  3    VTAQTFPYHLPRILDDLATCCFVSMDFEFSGIATTSSNPTRKPQSLQARYEEVKNSADKY  62
            VT   F   LP IL  +    FV++D EF+G+ +     +    + + RY +++++A+++
Sbjct  1    VTRSNFKELLPEILKAIKEADFVAIDLEFTGLGSPWRKSSLF-DTPEERYLKLRDAAERF  59

Query  63   QILQVGLTICHEDTKNASYTLKPYNVNLNPIIDRRLEVERGWSMQSSAIEFLLENKFSID  122
             ILQ GL    ED + + YT KPYN  L P  +   + +  +S Q+S+++FL ++ F  +
Sbjct  60   SILQFGLCCFREDEEKSKYTAKPYNFYLFPRTELDPDRD--FSCQASSLQFLAKHGFDFN  117

Query  123  SILKHGVQYLSREEEKRAIANAIERRDRVATHTLIDVKETEHESLAFLKAVRRVVDDWLA  182
             +   G+ YLSR EE++      ER+      +  D+   + E   F++ VR  + +WL 
Sbjct  118  KLFYEGIPYLSRAEEEKLRERLEERQQ----ASPSDIPLLDVEDKEFVERVRSKIKEWLD  173

Query  183  LGATREEYLNIPPPTRLGVSQSSKSLPSALNRFQKRLVHQLIEVEYPSLVAISRPDFIQI  242
             G  + E LNI  P                   Q+ L HQL+ V    L++  +   +Q+
Sbjct  174  SGEDKGEKLNIDNPVSRL-------------LLQQLLKHQLVRVLLVELLSRGKQKVVQV  220

Query  243  IDYNEERERSVR-EQRVKKIQERTWKQTGFRWVAEALAGGDLTNLHSGYFIGIMASSAAV  301
            +  + E E  +  E++  + +ER     GFR V +AL+                      
Sbjct  221  VKKSSEDEELLEKEEKKDEEEERLESAVGFRLVFDALSK---------------------  259

Query  302  EPKYPLNEFSDKLKQRLKEHRPVLVGHNIFSDLIYFCRCFFGPLPSKVEEFQSMAHELFP  361
                                R  +VGHN   DL++  + F+GPLP  +EEF+++ HELFP
Sbjct  260  -------------------SRKPIVGHNGLLDLLFLYQQFYGPLPETLEEFKALIHELFP  300

Query  362  VLMDTKYMATHN--CGSINPRSSLSELNENLAK---------KAIPKISIHPQHSKYTTQ  410
             + DTKY+AT +       P SSL EL E L K             +   H + SKY  +
Sbjct  301  GIYDTKYLATTDAEFKVRLPSSSLEELFEKLCKENFSSPSVETPPFESDYHDESSKYGGK  360

Query  411  KIDHEAGYDSLLTAQVF  427
               HEAGYD+ +T  VF
Sbjct  361  A--HEAGYDAYMTGYVF  375



Lambda      K        H        a         alpha
   0.317    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00013275

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433336 pfam13593, SBF_like, SBF-like CPA transporter family (...  279     3e-92


>CDD:433336 pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137). 
 These family members are 7TM putative membrane transporter 
proteins. The family is similar to the SBF family of bile-acid 
symporters, pfam01758.
Length=313

 Score = 279 bits (715),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 120/349 (34%), Positives = 175/349 (50%), Gaps = 36/349 (10%)

Query  36   QWLLIGIGVACVLAYYFPNVAKHGGVIRAEYSILYGAMAIIFLTSGLSIPRQKLLTHLLN  95
            QW L+G+ +A +LA   P     GG IRAEY I YG +A+IF  SGL +  ++LL  L N
Sbjct  1    QWFLLGLVLAILLASLLPVFGAAGGPIRAEYVITYG-VALIFFLSGLRLSTEELLAGLRN  59

Query  96   WRLHFLVQVFSFIFIPALTLAVVHIILAGDAHGHIDRAVLAGYIFTACIPTTIASNVVMT  155
            WRLH  VQ+F+F+  P L L +  ++ A      +   +L G++  A +PTT++S+V MT
Sbjct  60   WRLHLFVQLFTFVLFPLLGLGLSSLLPA-----ALPPELLIGFLLLAALPTTVSSSVAMT  114

Query  156  RSAGGDDAAALVEVVIANFLGPFITAGWTVTLLPTTAEFDPWRQANGDLSEMYKDVFKQL  215
              AGG+ AAA+    I N LG F+T      LL             G     Y  V K+L
Sbjct  115  SQAGGNVAAAVCNASIGNLLGVFLTPALVGLLLGG-----------GGAGIDYGAVLKKL  163

Query  216  GLSALLPLVIGQLVRWAWPEQTERVMQTYRIAKLGSACLLLIVWMTFSSCFATGALQTLS  275
            GL  LLPLV+GQL+R  +P+ T+R      + K+ S  +LLIV+ +FS+ F  GA  ++S
Sbjct  164  GLQVLLPLVLGQLLRPWFPKWTKRH--KKLLKKVDSGVILLIVYTSFSTAFVQGAFHSVS  221

Query  276  IQSVLFVVFFNIALYIALTAVCFVLSRPPEVLSVNRFGMRHIFKRITPEETIAVCFCGPA  335
               +L +    + L   +    + L+R          G        + E+ IA+ FCG  
Sbjct  222  HSILLVIFNVGLYLLAVVLGATWFLARL--------LGF-------SREDEIAILFCGSK  266

Query  336  KSTALGIPLLYAMWSPVDLYTKARTSVPVLLYTTEQICIAHFFVHALQR  384
            KS ALG+PL   +             +P+LLY   Q+ +       L R
Sbjct  267  KSLALGVPLASVL--FGGNPQLGLILLPLLLYHQIQLMVCSVLAPRLAR  313



Lambda      K        H        a         alpha
   0.327    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00018725

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461457 pfam04857, CAF1, CAF1 family ribonuclease. The major p...  136     2e-39


>CDD:461457 pfam04857, CAF1, CAF1 family ribonuclease.  The major pathways 
of mRNA turnover in eukaryotes initiate with shortening of 
the polyA tail. CAF1 encodes a critical component of the major 
cytoplasmic deadenylase in yeast. Both Caf1p is required 
for normal mRNA deadenylation in vivo and localizes to the 
cytoplasm. Caf1p copurifies with a Ccr4p-dependent polyA-specific 
exonuclease activity. Some members of this family include 
and inserted RNA binding domain pfam01424. This family of 
proteins is related to other exonucleases pfam00929 (Bateman 
A pers. obs.). The crystal structure of Saccharomyces cerevisiae 
Pop2 has been resolved at 2.3 Angstrom resolution.
Length=375

 Score = 136 bits (344),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 50/130 (38%), Positives = 68/130 (52%), Gaps = 13/130 (10%)

Query  24   LKEHRPVLVGHNIFSDLIYFCRCFFGPLPSKVEEFQSMAHELFPVLMDTKYMATHN--CG  81
            L + R  +VGHN   DL++  + F+GPLP  +EEF+++ HELFP + DTKY+AT +    
Sbjct  257  LSKSRKPIVGHNGLLDLLFLYQQFYGPLPETLEEFKALIHELFPGIYDTKYLATTDAEFK  316

Query  82   SINPRSSLSELNENLAKKAIPKISAHDFLDRQFELMAKKTTGIHPQHSKYTTQKIDHEAG  141
               P SSL EL E L K+     S                   H + SKY  +   HEAG
Sbjct  317  VRLPSSSLEELFEKLCKE--NFSSPSVETPPFES-------DYHDESSKYGGKA--HEAG  365

Query  142  YDSLLTAQVF  151
            YD+ +T  VF
Sbjct  366  YDAYMTGYVF  375



Lambda      K        H        a         alpha
   0.318    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00013276

Length=391
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461457 pfam04857, CAF1, CAF1 family ribonuclease. The major p...  231     4e-73


>CDD:461457 pfam04857, CAF1, CAF1 family ribonuclease.  The major pathways 
of mRNA turnover in eukaryotes initiate with shortening of 
the polyA tail. CAF1 encodes a critical component of the major 
cytoplasmic deadenylase in yeast. Both Caf1p is required 
for normal mRNA deadenylation in vivo and localizes to the 
cytoplasm. Caf1p copurifies with a Ccr4p-dependent polyA-specific 
exonuclease activity. Some members of this family include 
and inserted RNA binding domain pfam01424. This family of 
proteins is related to other exonucleases pfam00929 (Bateman 
A pers. obs.). The crystal structure of Saccharomyces cerevisiae 
Pop2 has been resolved at 2.3 Angstrom resolution.
Length=375

 Score = 231 bits (590),  Expect = 4e-73, Method: Composition-based stats.
 Identities = 94/333 (28%), Positives = 147/333 (44%), Gaps = 71/333 (21%)

Query  2    QSSAIEFLLENKFSIDSILKHGVQYLSREEEKRAIANAIERRDRVATHTLIDVKETEHES  61
            Q+S+++FL ++ F  + +   G+ YLSR EE++      ER+      +  D+   + E 
Sbjct  102  QASSLQFLAKHGFDFNKLFYEGIPYLSRAEEEKLRERLEERQQ----ASPSDIPLLDVED  157

Query  62   LAFLKAVRRVVDDWLALGATREEYLNIPPPTRLGVSQSSKSLPSALNRFQKRLVHQLIEV  121
              F++ VR  + +WL  G  + E LNI  P                   Q+ L HQL+ V
Sbjct  158  KEFVERVRSKIKEWLDSGEDKGEKLNIDNPVSRL-------------LLQQLLKHQLVRV  204

Query  122  EYPSLVAISRPDFIQIIDYNEERERSVR-EQRVKKIQERTWKQTGFRWVAEALAGGDLTN  180
                L++  +   +Q++  + E E  +  E++  + +ER     GFR V +AL+      
Sbjct  205  LLVELLSRGKQKVVQVVKKSSEDEELLEKEEKKDEEEERLESAVGFRLVFDALSK-----  259

Query  181  LHSGYFIGIMASSAAVEPKYPLNEFSDKLKQRLKEHRPVLVGHNIFSDLIYFCRCFFGPL  240
                                                R  +VGHN   DL++  + F+GPL
Sbjct  260  -----------------------------------SRKPIVGHNGLLDLLFLYQQFYGPL  284

Query  241  PSKVEEFQSMAHELFPVLMDTKYMATHN--CGSINPRSSLSELNENLAK---------KA  289
            P  +EEF+++ HELFP + DTKY+AT +       P SSL EL E L K           
Sbjct  285  PETLEEFKALIHELFPGIYDTKYLATTDAEFKVRLPSSSLEELFEKLCKENFSSPSVETP  344

Query  290  IPKISIHPQHSKYTTQKIDHEAGYDSLLTAQVF  322
              +   H + SKY  +   HEAGYD+ +T  VF
Sbjct  345  PFESDYHDESSKYGGKA--HEAGYDAYMTGYVF  375



Lambda      K        H        a         alpha
   0.317    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00018726

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461457 pfam04857, CAF1, CAF1 family ribonuclease. The major p...  139     3e-39


>CDD:461457 pfam04857, CAF1, CAF1 family ribonuclease.  The major pathways 
of mRNA turnover in eukaryotes initiate with shortening of 
the polyA tail. CAF1 encodes a critical component of the major 
cytoplasmic deadenylase in yeast. Both Caf1p is required 
for normal mRNA deadenylation in vivo and localizes to the 
cytoplasm. Caf1p copurifies with a Ccr4p-dependent polyA-specific 
exonuclease activity. Some members of this family include 
and inserted RNA binding domain pfam01424. This family of 
proteins is related to other exonucleases pfam00929 (Bateman 
A pers. obs.). The crystal structure of Saccharomyces cerevisiae 
Pop2 has been resolved at 2.3 Angstrom resolution.
Length=375

 Score = 139 bits (353),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 50/130 (38%), Positives = 68/130 (52%), Gaps = 13/130 (10%)

Query  24   LKEHRPVLVGHNIFSDLIYFCRCFFGPLPSKVEEFQSMAHELFPVLMDTKYMATHN--CG  81
            L + R  +VGHN   DL++  + F+GPLP  +EEF+++ HELFP + DTKY+AT +    
Sbjct  257  LSKSRKPIVGHNGLLDLLFLYQQFYGPLPETLEEFKALIHELFPGIYDTKYLATTDAEFK  316

Query  82   SINPRSSLSELNENLAKKAIPKISAHDFLDRQFELMAKKTTGIHPQHSKYTTQKIDHEAG  141
               P SSL EL E L K+     S                   H + SKY  +   HEAG
Sbjct  317  VRLPSSSLEELFEKLCKE--NFSSPSVETPPFES-------DYHDESSKYGGKA--HEAG  365

Query  142  YDSLLTAQVF  151
            YD+ +T  VF
Sbjct  366  YDAYMTGYVF  375



Lambda      K        H        a         alpha
   0.316    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00013278

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432074 pfam11788, MRP-L46, 39S mitochondrial ribosomal protei...  128     2e-38


>CDD:432074 pfam11788, MRP-L46, 39S mitochondrial ribosomal protein L46. 
 This is the L46 subunit of the mammalian mitochondrial ribosome, 
conserved from plants and fungi.
Length=120

 Score = 128 bits (322),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 50/136 (37%), Positives = 68/136 (50%), Gaps = 22/136 (16%)

Query  66   IKAGVALSRPPQITRDLTPFEKAYFFYQKRLNERLALPFTKYFYFKRGTPADEDW---KR  122
            I  G+ LSRPP +T + +PFEK Y+ YQ+ L ERL   F++YFYFK+GT A+  +   ++
Sbjct  3    ISVGLILSRPPVVTPEPSPFEKEYYKYQEELLERLMWEFSRYFYFKKGTLAELRFKELQK  62

Query  123  KIRERQ-TPARDIGKYNAYSKEAWNDELLVGAVESEPEHQIEMLVRDAESTANATSQDTS  181
            K  +R    A  IGK +       NDE  +G  +S  E   E                  
Sbjct  63   KPIDRLEEIAFPIGKPDLRQDRERNDEQEIGLPKSGLEESEE------------------  104

Query  182  KKEEIPRPFPRVTEAD  197
              E   +P PRVTEAD
Sbjct  105  DVERRIKPAPRVTEAD  120



Lambda      K        H        a         alpha
   0.314    0.128    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00013279

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432074 pfam11788, MRP-L46, 39S mitochondrial ribosomal protei...  134     9e-40


>CDD:432074 pfam11788, MRP-L46, 39S mitochondrial ribosomal protein L46. 
 This is the L46 subunit of the mammalian mitochondrial ribosome, 
conserved from plants and fungi.
Length=120

 Score = 134 bits (339),  Expect = 9e-40, Method: Composition-based stats.
 Identities = 50/136 (37%), Positives = 68/136 (50%), Gaps = 22/136 (16%)

Query  66   IKAGVALSRPPQITRDLTPFEKAYFFYQKRLNERLALPFTKYFYFKRGTPADEDW---KR  122
            I  G+ LSRPP +T + +PFEK Y+ YQ+ L ERL   F++YFYFK+GT A+  +   ++
Sbjct  3    ISVGLILSRPPVVTPEPSPFEKEYYKYQEELLERLMWEFSRYFYFKKGTLAELRFKELQK  62

Query  123  KIRERQ-TPARDIGKYNAYSKEAWNDELLVGAVESEPEHQIEMLVRDAESTANATSQDTS  181
            K  +R    A  IGK +       NDE  +G  +S  E   E                  
Sbjct  63   KPIDRLEEIAFPIGKPDLRQDRERNDEQEIGLPKSGLEESEE------------------  104

Query  182  KKEEIPRPFPRVTEAD  197
              E   +P PRVTEAD
Sbjct  105  DVERRIKPAPRVTEAD  120



Lambda      K        H        a         alpha
   0.316    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00013280

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00018727

Length=802


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1030247616


Query= TCONS_00013281

Length=262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF13...  80.7    2e-19


>CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF1349).  This 
family consists of several hypothetical bacterial proteins 
but contains one sequence from Saccharomyces cerevisiae. 
Members of this family are typically around 200 residues in 
length. The function of this family is unknown.
Length=168

 Score = 80.7 bits (200),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 79/236 (33%), Gaps = 77/236 (33%)

Query  27   TLTAGPNTDLWRKPPNGDTA-TAPIVFTSLRNPFVVAEVTVSADWEMESDQGGIVVFAGA  85
            T+T  P TD WR+   G     AP + T +   F  AEV VS D++   DQ G++V    
Sbjct  7    TITTPPKTDFWRRTHYGFVRDNAPFLLTPVAGDFT-AEVKVSGDFKELYDQAGLMVRV--  63

Query  86   APQSFSSENVPISPVTPFSRHGISRSLRPCKWVKAGMEFCSGTVNVSSVSATADGADWCV  145
                   EN                      W+KAG+E+  G   + SV  T   +DW  
Sbjct  64   -----DEEN----------------------WIKAGIEYNDGVQRLGSV-VTNGYSDWST  95

Query  146  SPLCLPDNGPTTVHSLRIKFERVGHSLMVWYQIPTLSPFARTPGAVGSTWKKLREVTWFF  205
            SPL            + ++  R G            +    T G     W  LR      
Sbjct  96   SPL----PSEWDPKEVWLRVSRRG---------DAFTIEYSTDGE---KWTLLR----LA  135

Query  206  YGVEDKCVHVGVYASRPANISRNSTMWAVMNGPMLGSSAMAGSEEGLVVEFEDLEI  261
            +    + V VG+YA  P                         + EG  V F++  +
Sbjct  136  HLPAAEEVQVGLYACSP-------------------------TGEGFTVTFDEFRL  166



Lambda      K        H        a         alpha
   0.318    0.132    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00013284

Length=262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF13...  80.7    2e-19


>CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF1349).  This 
family consists of several hypothetical bacterial proteins 
but contains one sequence from Saccharomyces cerevisiae. 
Members of this family are typically around 200 residues in 
length. The function of this family is unknown.
Length=168

 Score = 80.7 bits (200),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 79/236 (33%), Gaps = 77/236 (33%)

Query  27   TLTAGPNTDLWRKPPNGDTA-TAPIVFTSLRNPFVVAEVTVSADWEMESDQGGIVVFAGA  85
            T+T  P TD WR+   G     AP + T +   F  AEV VS D++   DQ G++V    
Sbjct  7    TITTPPKTDFWRRTHYGFVRDNAPFLLTPVAGDFT-AEVKVSGDFKELYDQAGLMVRV--  63

Query  86   APQSFSSENVPISPVTPFSRHGISRSLRPCKWVKAGMEFCSGTVNVSSVSATADGADWCV  145
                   EN                      W+KAG+E+  G   + SV  T   +DW  
Sbjct  64   -----DEEN----------------------WIKAGIEYNDGVQRLGSV-VTNGYSDWST  95

Query  146  SPLCLPDNGPTTVHSLRIKFERVGHSLMVWYQIPTLSPFARTPGAVGSTWKKLREVTWFF  205
            SPL            + ++  R G            +    T G     W  LR      
Sbjct  96   SPL----PSEWDPKEVWLRVSRRG---------DAFTIEYSTDGE---KWTLLR----LA  135

Query  206  YGVEDKCVHVGVYASRPANISRNSTMWAVMNGPMLGSSAMAGSEEGLVVEFEDLEI  261
            +    + V VG+YA  P                         + EG  V F++  +
Sbjct  136  HLPAAEEVQVGLYACSP-------------------------TGEGFTVTFDEFRL  166



Lambda      K        H        a         alpha
   0.318    0.132    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00013283

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF13...  83.4    3e-20


>CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF1349).  This 
family consists of several hypothetical bacterial proteins 
but contains one sequence from Saccharomyces cerevisiae. 
Members of this family are typically around 200 residues in 
length. The function of this family is unknown.
Length=168

 Score = 83.4 bits (207),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 57/238 (24%), Positives = 80/238 (34%), Gaps = 77/238 (32%)

Query  27   TLTAGPNTDLWRKPPNGDTA-TAPIVFTSLRNPFVVAEVTVSADWEMESDQGGIVVFAGA  85
            T+T  P TD WR+   G     AP + T +   F  AEV VS D++   DQ G++V    
Sbjct  7    TITTPPKTDFWRRTHYGFVRDNAPFLLTPVAGDFT-AEVKVSGDFKELYDQAGLMVRV--  63

Query  86   APQSFSSENVPISPVTPFSRHGISRSLRPCKWVKAGMEFCSGTVNVSSVSATADGADWCV  145
                   EN                      W+KAG+E+  G   + SV  T   +DW  
Sbjct  64   -----DEEN----------------------WIKAGIEYNDGVQRLGSV-VTNGYSDWST  95

Query  146  SPLCLPDNGPTTVHSLRIKFERVGHSLMVWYQIPTLSPFARTPGAVGSTWKKLREVTWFF  205
            SPL            + ++  R G            +    T G     W  LR      
Sbjct  96   SPL----PSEWDPKEVWLRVSRRG---------DAFTIEYSTDGE---KWTLLR----LA  135

Query  206  YGVEDKCVHVGVYASRPANISRNSTMWAVMNGPMLGSSAMAGSEEGLVVEFEDLELRP  263
            +    + V VG+YA  P                         + EG  V F++  L P
Sbjct  136  HLPAAEEVQVGLYACSP-------------------------TGEGFTVTFDEFRLTP  168



Lambda      K        H        a         alpha
   0.319    0.133    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00013282

Length=262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF13...  80.7    2e-19


>CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF1349).  This 
family consists of several hypothetical bacterial proteins 
but contains one sequence from Saccharomyces cerevisiae. 
Members of this family are typically around 200 residues in 
length. The function of this family is unknown.
Length=168

 Score = 80.7 bits (200),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 79/236 (33%), Gaps = 77/236 (33%)

Query  27   TLTAGPNTDLWRKPPNGDTA-TAPIVFTSLRNPFVVAEVTVSADWEMESDQGGIVVFAGA  85
            T+T  P TD WR+   G     AP + T +   F  AEV VS D++   DQ G++V    
Sbjct  7    TITTPPKTDFWRRTHYGFVRDNAPFLLTPVAGDFT-AEVKVSGDFKELYDQAGLMVRV--  63

Query  86   APQSFSSENVPISPVTPFSRHGISRSLRPCKWVKAGMEFCSGTVNVSSVSATADGADWCV  145
                   EN                      W+KAG+E+  G   + SV  T   +DW  
Sbjct  64   -----DEEN----------------------WIKAGIEYNDGVQRLGSV-VTNGYSDWST  95

Query  146  SPLCLPDNGPTTVHSLRIKFERVGHSLMVWYQIPTLSPFARTPGAVGSTWKKLREVTWFF  205
            SPL            + ++  R G            +    T G     W  LR      
Sbjct  96   SPL----PSEWDPKEVWLRVSRRG---------DAFTIEYSTDGE---KWTLLR----LA  135

Query  206  YGVEDKCVHVGVYASRPANISRNSTMWAVMNGPMLGSSAMAGSEEGLVVEFEDLEI  261
            +    + V VG+YA  P                         + EG  V F++  +
Sbjct  136  HLPAAEEVQVGLYACSP-------------------------TGEGFTVTFDEFRL  166



Lambda      K        H        a         alpha
   0.318    0.132    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00013286

Length=262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF13...  80.7    2e-19


>CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF1349).  This 
family consists of several hypothetical bacterial proteins 
but contains one sequence from Saccharomyces cerevisiae. 
Members of this family are typically around 200 residues in 
length. The function of this family is unknown.
Length=168

 Score = 80.7 bits (200),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 79/236 (33%), Gaps = 77/236 (33%)

Query  27   TLTAGPNTDLWRKPPNGDTA-TAPIVFTSLRNPFVVAEVTVSADWEMESDQGGIVVFAGA  85
            T+T  P TD WR+   G     AP + T +   F  AEV VS D++   DQ G++V    
Sbjct  7    TITTPPKTDFWRRTHYGFVRDNAPFLLTPVAGDFT-AEVKVSGDFKELYDQAGLMVRV--  63

Query  86   APQSFSSENVPISPVTPFSRHGISRSLRPCKWVKAGMEFCSGTVNVSSVSATADGADWCV  145
                   EN                      W+KAG+E+  G   + SV  T   +DW  
Sbjct  64   -----DEEN----------------------WIKAGIEYNDGVQRLGSV-VTNGYSDWST  95

Query  146  SPLCLPDNGPTTVHSLRIKFERVGHSLMVWYQIPTLSPFARTPGAVGSTWKKLREVTWFF  205
            SPL            + ++  R G            +    T G     W  LR      
Sbjct  96   SPL----PSEWDPKEVWLRVSRRG---------DAFTIEYSTDGE---KWTLLR----LA  135

Query  206  YGVEDKCVHVGVYASRPANISRNSTMWAVMNGPMLGSSAMAGSEEGLVVEFEDLEI  261
            +    + V VG+YA  P                         + EG  V F++  +
Sbjct  136  HLPAAEEVQVGLYACSP-------------------------TGEGFTVTFDEFRL  166



Lambda      K        H        a         alpha
   0.318    0.132    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00018728

Length=262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF13...  80.7    2e-19


>CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF1349).  This 
family consists of several hypothetical bacterial proteins 
but contains one sequence from Saccharomyces cerevisiae. 
Members of this family are typically around 200 residues in 
length. The function of this family is unknown.
Length=168

 Score = 80.7 bits (200),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 79/236 (33%), Gaps = 77/236 (33%)

Query  27   TLTAGPNTDLWRKPPNGDTA-TAPIVFTSLRNPFVVAEVTVSADWEMESDQGGIVVFAGA  85
            T+T  P TD WR+   G     AP + T +   F  AEV VS D++   DQ G++V    
Sbjct  7    TITTPPKTDFWRRTHYGFVRDNAPFLLTPVAGDFT-AEVKVSGDFKELYDQAGLMVRV--  63

Query  86   APQSFSSENVPISPVTPFSRHGISRSLRPCKWVKAGMEFCSGTVNVSSVSATADGADWCV  145
                   EN                      W+KAG+E+  G   + SV  T   +DW  
Sbjct  64   -----DEEN----------------------WIKAGIEYNDGVQRLGSV-VTNGYSDWST  95

Query  146  SPLCLPDNGPTTVHSLRIKFERVGHSLMVWYQIPTLSPFARTPGAVGSTWKKLREVTWFF  205
            SPL            + ++  R G            +    T G     W  LR      
Sbjct  96   SPL----PSEWDPKEVWLRVSRRG---------DAFTIEYSTDGE---KWTLLR----LA  135

Query  206  YGVEDKCVHVGVYASRPANISRNSTMWAVMNGPMLGSSAMAGSEEGLVVEFEDLEI  261
            +    + V VG+YA  P                         + EG  V F++  +
Sbjct  136  HLPAAEEVQVGLYACSP-------------------------TGEGFTVTFDEFRL  166



Lambda      K        H        a         alpha
   0.318    0.132    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00013287

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF13...  78.0    2e-18


>CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF1349).  This 
family consists of several hypothetical bacterial proteins 
but contains one sequence from Saccharomyces cerevisiae. 
Members of this family are typically around 200 residues in 
length. The function of this family is unknown.
Length=168

 Score = 78.0 bits (193),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 51/197 (26%), Positives = 71/197 (36%), Gaps = 52/197 (26%)

Query  27   TLTAGPNTDLWRKPPNGDTA-TAPIVFTSLRNPFVVAEVTVSADWEMESDQGGIVVFAGA  85
            T+T  P TD WR+   G     AP + T +   F  AEV VS D++   DQ G++V    
Sbjct  7    TITTPPKTDFWRRTHYGFVRDNAPFLLTPVAGDFT-AEVKVSGDFKELYDQAGLMVRV--  63

Query  86   APQSFSSENVPISPVTPFSRHGISRSLRPCKWVKAGMEFCSGTVNVSSVSATADGADWCV  145
                   EN                      W+KAG+E+  G   + SV  T   +DW  
Sbjct  64   -----DEEN----------------------WIKAGIEYNDGVQRLGSV-VTNGYSDWST  95

Query  146  SPLCLPDNGPTTVHSLRIKFERVGHSLMVWYQIPTLSPFARTPGAVGSTWKKLREVTWFF  205
            SPL            + ++  R G            +    T G     W  LR      
Sbjct  96   SPL----PSEWDPKEVWLRVSRRG---------DAFTIEYSTDGE---KWTLLR----LA  135

Query  206  YGVEDKCVHVGVYASRP  222
            +    + V VG+YA  P
Sbjct  136  HLPAAEEVQVGLYACSP  152



Lambda      K        H        a         alpha
   0.318    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00013288

Length=271
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF13...  80.7    3e-19


>CDD:462084 pfam07081, DUF1349, Protein of unknown function (DUF1349).  This 
family consists of several hypothetical bacterial proteins 
but contains one sequence from Saccharomyces cerevisiae. 
Members of this family are typically around 200 residues in 
length. The function of this family is unknown.
Length=168

 Score = 80.7 bits (200),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 79/236 (33%), Gaps = 77/236 (33%)

Query  27   TLTAGPNTDLWRKPPNGDTA-TAPIVFTSLRNPFVVAEVTVSADWEMESDQGGIVVFAGA  85
            T+T  P TD WR+   G     AP + T +   F  AEV VS D++   DQ G++V    
Sbjct  7    TITTPPKTDFWRRTHYGFVRDNAPFLLTPVAGDFT-AEVKVSGDFKELYDQAGLMVRV--  63

Query  86   APQSFSSENVPISPVTPFSRHGISRSLRPCKWVKAGMEFCSGTVNVSSVSATADGADWCV  145
                   EN                      W+KAG+E+  G   + SV  T   +DW  
Sbjct  64   -----DEEN----------------------WIKAGIEYNDGVQRLGSV-VTNGYSDWST  95

Query  146  SPLCLPDNGPTTVHSLRIKFERVGHSLMVWYQIPTLSPFARTPGAVGSTWKKLREVTWFF  205
            SPL            + ++  R G            +    T G     W  LR      
Sbjct  96   SPL----PSEWDPKEVWLRVSRRG---------DAFTIEYSTDGE---KWTLLR----LA  135

Query  206  YGVEDKCVHVGVYASRPANISRNSTMWAVMNGPMLGSSAMAGSEEGLVVEFEDLEI  261
            +    + V VG+YA  P                         + EG  V F++  +
Sbjct  136  HLPAAEEVQVGLYACSP-------------------------TGEGFTVTFDEFRL  166



Lambda      K        H        a         alpha
   0.319    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00018729

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00018730

Length=2153
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465176 pfam16561, AMPK1_CBM, Glycogen recognition site of AMP...  64.1    8e-13


>CDD:465176 pfam16561, AMPK1_CBM, Glycogen recognition site of AMP-activated 
protein kinase.  AMPK1_CBM is a family found in close association 
with AMPKBI pfam04739. The surface of AMPK1_CBM reveals 
a carbohydrate-binding pocket.
Length=85

 Score = 64.1 bits (157),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 29/83 (35%), Positives = 41/83 (49%), Gaps = 17/83 (20%)

Query  25   IYVAGTFSNPNWEPLELSAKPLEHKDADGKPTKTEYLFSRDVELPEGQYQYRFREGTDGP  84
            +YV G+F N  W+       PL+    D         F+  ++LP G +QY+F    DG 
Sbjct  14   VYVTGSFDN--WK----KKIPLQKSGGD---------FTTILDLPPGTHQYKFI--VDGE  56

Query  85   WFHDKDVKHAADDKGVVNNILTV  107
            W HD D+  A DD G +NN + V
Sbjct  57   WRHDPDLPTATDDMGNLNNYIEV  79



Lambda      K        H        a         alpha
   0.295    0.116    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2703891672


Query= TCONS_00018731

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00013290

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00013292

Length=2153
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465176 pfam16561, AMPK1_CBM, Glycogen recognition site of AMP...  64.1    8e-13


>CDD:465176 pfam16561, AMPK1_CBM, Glycogen recognition site of AMP-activated 
protein kinase.  AMPK1_CBM is a family found in close association 
with AMPKBI pfam04739. The surface of AMPK1_CBM reveals 
a carbohydrate-binding pocket.
Length=85

 Score = 64.1 bits (157),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 29/83 (35%), Positives = 41/83 (49%), Gaps = 17/83 (20%)

Query  25   IYVAGTFSNPNWEPLELSAKPLEHKDADGKPTKTEYLFSRDVELPEGQYQYRFREGTDGP  84
            +YV G+F N  W+       PL+    D         F+  ++LP G +QY+F    DG 
Sbjct  14   VYVTGSFDN--WK----KKIPLQKSGGD---------FTTILDLPPGTHQYKFI--VDGE  56

Query  85   WFHDKDVKHAADDKGVVNNILTV  107
            W HD D+  A DD G +NN + V
Sbjct  57   WRHDPDLPTATDDMGNLNNYIEV  79



Lambda      K        H        a         alpha
   0.295    0.116    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2703891672


Query= TCONS_00018732

Length=1995


***** No hits found *****



Lambda      K        H        a         alpha
   0.294    0.115    0.303    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2495697284


Query= TCONS_00013293

Length=2170
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465176 pfam16561, AMPK1_CBM, Glycogen recognition site of AMP...  64.1    8e-13


>CDD:465176 pfam16561, AMPK1_CBM, Glycogen recognition site of AMP-activated 
protein kinase.  AMPK1_CBM is a family found in close association 
with AMPKBI pfam04739. The surface of AMPK1_CBM reveals 
a carbohydrate-binding pocket.
Length=85

 Score = 64.1 bits (157),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 29/83 (35%), Positives = 41/83 (49%), Gaps = 17/83 (20%)

Query  22   IYVAGTFSNPNWEPLELSAKPLEHKDADGKPTKTEYLFSRDVELPEGQYQYRFREGTDGP  81
            +YV G+F N  W+       PL+    D         F+  ++LP G +QY+F    DG 
Sbjct  14   VYVTGSFDN--WK----KKIPLQKSGGD---------FTTILDLPPGTHQYKFI--VDGE  56

Query  82   WFHDKDVKHAADDKGVVNNILTV  104
            W HD D+  A DD G +NN + V
Sbjct  57   WRHDPDLPTATDDMGNLNNYIEV  79



Lambda      K        H        a         alpha
   0.295    0.116    0.308    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2726292334


Query= TCONS_00013294

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0718    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00013295

Length=692
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462199 pfam07540, NOC3p, Nucleolar complex-associated protein...  126     2e-35
CDD:461090 pfam03914, CBF, CBF/Mak21 family                           99.2    6e-25


>CDD:462199 pfam07540, NOC3p, Nucleolar complex-associated protein.  Nucleolar 
complex-associated protein (Noc3p) is conserved in eukaryotes 
and has essential roles in replication and rRNA processing 
in Saccharomyces cerevisiae.
Length=92

 Score = 126 bits (320),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 71/93 (76%), Gaps = 1/93 (1%)

Query  128  QAKEELARLATIINEDPEEHISSFKSMADMVENGQHVTIQKLALAAQAAVYKDVIPGYRI  187
            +AKEE+A LA+ I EDPEE+I   K +  + E+   VTI+KLAL +  AV+KD+IPGYRI
Sbjct  1    EAKEEIASLASSILEDPEENIGLLKRLLKLAESKD-VTIRKLALLSLLAVFKDIIPGYRI  59

Query  188  RPLSEEDMSAKVSKEVRKLRSFEQSLLSGYKHY  220
            RPL+E++ + KVSKEV+KLR FEQSLL  YK Y
Sbjct  60   RPLTEKEKAEKVSKEVKKLREFEQSLLKNYKKY  92


>CDD:461090 pfam03914, CBF, CBF/Mak21 family.  
Length=151

 Score = 99.2 bits (248),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 42/204 (21%), Positives = 63/204 (31%), Gaps = 64/204 (31%)

Query  488  ALLCTITAFALLEGQDISKAASSLHLDLSFFVKHLYRSLYSLSVNPDVEYNPTKALRLPD  547
            +L      F L+   +              F + LY  L                    D
Sbjct  1    SLQALNLLFQLMSSHN------------PRFYRALYELLL-------------------D  29

Query  548  PNSNEANGSTHRSKSKVNFQTPTVLLLRCLQSTLLSRAHGTPPTIRLGSFTKRLMTTSLQ  607
            P               +   +   L L  L   L        P  R+ +F KRL+  +L 
Sbjct  30   PR--------------LLHSSKQALFLNLLDKAL--------PAARVAAFVKRLLQLALH  67

Query  608  VPEKSALATLSLLNQVAKHHARRIAPLWNSEER-----------KGDGVFNPFAADVETT  656
             P       L L++ + K H   +  L + EE            +G   ++P   D E +
Sbjct  68   APPSFICGILYLISNLLKRHPPSLRSLLHREEEEEEEEKEKKSEEGSDPYDPRKRDPEFS  127

Query  657  NVFAGTVWEGELLRLHYCPQVRDA  680
            N    ++WE ELL  HY P V   
Sbjct  128  NADESSLWELELLLKHYHPSVSLF  151



Lambda      K        H        a         alpha
   0.315    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 883399210


Query= TCONS_00013297

Length=692
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462199 pfam07540, NOC3p, Nucleolar complex-associated protein...  126     2e-35
CDD:461090 pfam03914, CBF, CBF/Mak21 family                           99.2    6e-25


>CDD:462199 pfam07540, NOC3p, Nucleolar complex-associated protein.  Nucleolar 
complex-associated protein (Noc3p) is conserved in eukaryotes 
and has essential roles in replication and rRNA processing 
in Saccharomyces cerevisiae.
Length=92

 Score = 126 bits (320),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 71/93 (76%), Gaps = 1/93 (1%)

Query  128  QAKEELARLATIINEDPEEHISSFKSMADMVENGQHVTIQKLALAAQAAVYKDVIPGYRI  187
            +AKEE+A LA+ I EDPEE+I   K +  + E+   VTI+KLAL +  AV+KD+IPGYRI
Sbjct  1    EAKEEIASLASSILEDPEENIGLLKRLLKLAESKD-VTIRKLALLSLLAVFKDIIPGYRI  59

Query  188  RPLSEEDMSAKVSKEVRKLRSFEQSLLSGYKHY  220
            RPL+E++ + KVSKEV+KLR FEQSLL  YK Y
Sbjct  60   RPLTEKEKAEKVSKEVKKLREFEQSLLKNYKKY  92


>CDD:461090 pfam03914, CBF, CBF/Mak21 family.  
Length=151

 Score = 99.2 bits (248),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 42/204 (21%), Positives = 63/204 (31%), Gaps = 64/204 (31%)

Query  488  ALLCTITAFALLEGQDISKAASSLHLDLSFFVKHLYRSLYSLSVNPDVEYNPTKALRLPD  547
            +L      F L+   +              F + LY  L                    D
Sbjct  1    SLQALNLLFQLMSSHN------------PRFYRALYELLL-------------------D  29

Query  548  PNSNEANGSTHRSKSKVNFQTPTVLLLRCLQSTLLSRAHGTPPTIRLGSFTKRLMTTSLQ  607
            P               +   +   L L  L   L        P  R+ +F KRL+  +L 
Sbjct  30   PR--------------LLHSSKQALFLNLLDKAL--------PAARVAAFVKRLLQLALH  67

Query  608  VPEKSALATLSLLNQVAKHHARRIAPLWNSEER-----------KGDGVFNPFAADVETT  656
             P       L L++ + K H   +  L + EE            +G   ++P   D E +
Sbjct  68   APPSFICGILYLISNLLKRHPPSLRSLLHREEEEEEEEKEKKSEEGSDPYDPRKRDPEFS  127

Query  657  NVFAGTVWEGELLRLHYCPQVRDA  680
            N    ++WE ELL  HY P V   
Sbjct  128  NADESSLWELELLLKHYHPSVSLF  151



Lambda      K        H        a         alpha
   0.315    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 883399210


Query= TCONS_00018733

Length=692
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462199 pfam07540, NOC3p, Nucleolar complex-associated protein...  126     2e-35
CDD:461090 pfam03914, CBF, CBF/Mak21 family                           99.2    6e-25


>CDD:462199 pfam07540, NOC3p, Nucleolar complex-associated protein.  Nucleolar 
complex-associated protein (Noc3p) is conserved in eukaryotes 
and has essential roles in replication and rRNA processing 
in Saccharomyces cerevisiae.
Length=92

 Score = 126 bits (320),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 71/93 (76%), Gaps = 1/93 (1%)

Query  128  QAKEELARLATIINEDPEEHISSFKSMADMVENGQHVTIQKLALAAQAAVYKDVIPGYRI  187
            +AKEE+A LA+ I EDPEE+I   K +  + E+   VTI+KLAL +  AV+KD+IPGYRI
Sbjct  1    EAKEEIASLASSILEDPEENIGLLKRLLKLAESKD-VTIRKLALLSLLAVFKDIIPGYRI  59

Query  188  RPLSEEDMSAKVSKEVRKLRSFEQSLLSGYKHY  220
            RPL+E++ + KVSKEV+KLR FEQSLL  YK Y
Sbjct  60   RPLTEKEKAEKVSKEVKKLREFEQSLLKNYKKY  92


>CDD:461090 pfam03914, CBF, CBF/Mak21 family.  
Length=151

 Score = 99.2 bits (248),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 42/204 (21%), Positives = 63/204 (31%), Gaps = 64/204 (31%)

Query  488  ALLCTITAFALLEGQDISKAASSLHLDLSFFVKHLYRSLYSLSVNPDVEYNPTKALRLPD  547
            +L      F L+   +              F + LY  L                    D
Sbjct  1    SLQALNLLFQLMSSHN------------PRFYRALYELLL-------------------D  29

Query  548  PNSNEANGSTHRSKSKVNFQTPTVLLLRCLQSTLLSRAHGTPPTIRLGSFTKRLMTTSLQ  607
            P               +   +   L L  L   L        P  R+ +F KRL+  +L 
Sbjct  30   PR--------------LLHSSKQALFLNLLDKAL--------PAARVAAFVKRLLQLALH  67

Query  608  VPEKSALATLSLLNQVAKHHARRIAPLWNSEER-----------KGDGVFNPFAADVETT  656
             P       L L++ + K H   +  L + EE            +G   ++P   D E +
Sbjct  68   APPSFICGILYLISNLLKRHPPSLRSLLHREEEEEEEEKEKKSEEGSDPYDPRKRDPEFS  127

Query  657  NVFAGTVWEGELLRLHYCPQVRDA  680
            N    ++WE ELL  HY P V   
Sbjct  128  NADESSLWELELLLKHYHPSVSLF  151



Lambda      K        H        a         alpha
   0.315    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 883399210


Query= TCONS_00013298

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461006 pfam03657, UPF0113, Uncharacterized protein family (UP...  87.0    1e-23
CDD:436078 pfam17833, UPF0113_N, UPF0113 Pre-PUA domain               82.3    1e-21


>CDD:461006 pfam03657, UPF0113, Uncharacterized protein family (UPF0113). 
 
Length=73

 Score = 87.0 bits (216),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 32/79 (41%), Positives = 45/79 (57%), Gaps = 7/79 (9%)

Query  100  KVWIKDNGIMPYLYGSNVVKAHVGRWSEDIPEHTGVLVYDSNDTPLGFGVTARSTAEIRK  159
            KVW+K+ G   +LYG +V+K  + + +E + E+  V+V + N  PLGFG T       RK
Sbjct  1    KVWVKEKGEKLFLYGRDVLKESILKITEPVKENIVVVVLNENGEPLGFGRT-------RK  53

Query  160  LDPTAIAVFRQADIGEYLR  178
              P    V   AD+GEYLR
Sbjct  54   ASPGGKVVKNLADLGEYLR  72


>CDD:436078 pfam17833, UPF0113_N, UPF0113 Pre-PUA domain.  
Length=77

 Score = 82.3 bits (204),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 34/86 (40%), Positives = 49/86 (57%), Gaps = 9/86 (10%)

Query  2   RQLTEQELQTLLAKLAGYTGRSLNNLIVPQSDSEDDRHVFRLQGNRVYYVKKSLADLSTS  61
           R L E+E++ +  KL+ Y G ++ +L+  +   E+ R         V+YV K L  L + 
Sbjct  1   RPLKEEEIKKVFKKLSKYIGDNVKDLLDVREGEENKR---------VFYVSKELLKLVSK  51

Query  62  FPRDTLLSLGTCIGKFTKTGKFRIHI  87
            PR  L+S GTCIGKFTK  KFR+ I
Sbjct  52  IPRKNLVSAGTCIGKFTKKKKFRLSI  77



Lambda      K        H        a         alpha
   0.320    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00013299

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460971 pfam03556, Cullin_binding, Cullin binding. This domain...  147     1e-45
CDD:464207 pfam14555, UBA_4, UBA-like domain                          54.0    8e-11


>CDD:460971 pfam03556, Cullin_binding, Cullin binding.  This domain binds 
to cullins and to Rbx-1, components of an E3 ubiquitin ligase 
complex for neddylation. Neddylation is the process by which 
the C-terminal glycine of the ubiquitin-like protein Nedd8 
is covalently linked to lysine residues in a protein through 
an isopeptide bond. The structure of this domain is composed 
entirely of alpha helices.
Length=117

 Score = 147 bits (374),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 64/124 (52%), Gaps = 7/124 (6%)

Query  131  KMIAHAADIRARIPAEPDLFRRVYRYTFPLCRMQGQRNLQFDIAVEQWRLFFTPEHGGIQ  190
            K+ A   ++R  +    + F++VYR+TF   +  GQ++L  + A+E W+L          
Sbjct  1    KLKAKLPELRKELTDPSEYFKKVYRFTFDFAKEPGQKSLDLETAIEYWKLLLGGRFR---  57

Query  191  WNTPTTPWLDWWIEYLEERGKRPVNKDLWEQVEVFLRKTLEDENFGWWSADAAWPGTLDE  250
                  P LD WIE+LEE  K  ++KD W     F RK  EDE+   +  D AWP  +DE
Sbjct  58   ----IFPLLDLWIEFLEEEKKVKISKDTWNMFLEFARKVDEDEDLSNYDEDGAWPSLIDE  113

Query  251  FVGW  254
            FV W
Sbjct  114  FVEW  117


>CDD:464207 pfam14555, UBA_4, UBA-like domain.  
Length=43

 Score = 54.0 bits (131),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 0/42 (0%)

Query  9   KQLISQFVNFTEAKDAVAAKFLKAHRWNVEEAIDAYFQSPQS  50
            +LI+QF   T A + VA ++L+AH W++E A++A+F   ++
Sbjct  1   DELIAQFQAITGADEEVARQYLEAHNWDLEAAVNAFFDDGEA  42



Lambda      K        H        a         alpha
   0.319    0.136    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00013300

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460971 pfam03556, Cullin_binding, Cullin binding. This domain...  147     1e-45
CDD:464207 pfam14555, UBA_4, UBA-like domain                          54.0    8e-11


>CDD:460971 pfam03556, Cullin_binding, Cullin binding.  This domain binds 
to cullins and to Rbx-1, components of an E3 ubiquitin ligase 
complex for neddylation. Neddylation is the process by which 
the C-terminal glycine of the ubiquitin-like protein Nedd8 
is covalently linked to lysine residues in a protein through 
an isopeptide bond. The structure of this domain is composed 
entirely of alpha helices.
Length=117

 Score = 147 bits (374),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 64/124 (52%), Gaps = 7/124 (6%)

Query  131  KMIAHAADIRARIPAEPDLFRRVYRYTFPLCRMQGQRNLQFDIAVEQWRLFFTPEHGGIQ  190
            K+ A   ++R  +    + F++VYR+TF   +  GQ++L  + A+E W+L          
Sbjct  1    KLKAKLPELRKELTDPSEYFKKVYRFTFDFAKEPGQKSLDLETAIEYWKLLLGGRFR---  57

Query  191  WNTPTTPWLDWWIEYLEERGKRPVNKDLWEQVEVFLRKTLEDENFGWWSADAAWPGTLDE  250
                  P LD WIE+LEE  K  ++KD W     F RK  EDE+   +  D AWP  +DE
Sbjct  58   ----IFPLLDLWIEFLEEEKKVKISKDTWNMFLEFARKVDEDEDLSNYDEDGAWPSLIDE  113

Query  251  FVGW  254
            FV W
Sbjct  114  FVEW  117


>CDD:464207 pfam14555, UBA_4, UBA-like domain.  
Length=43

 Score = 54.0 bits (131),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 0/42 (0%)

Query  9   KQLISQFVNFTEAKDAVAAKFLKAHRWNVEEAIDAYFQSPQS  50
            +LI+QF   T A + VA ++L+AH W++E A++A+F   ++
Sbjct  1   DELIAQFQAITGADEEVARQYLEAHNWDLEAAVNAFFDDGEA  42



Lambda      K        H        a         alpha
   0.319    0.136    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00018734

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00013301

Length=456


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00013302

Length=456


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00018735

Length=639
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  184     4e-56
CDD:426738 pfam02359, CDC48_N, Cell division protein 48 (CDC48), ...  82.6    7e-20
CDD:465537 pfam17862, AAA_lid_3, AAA+ lid domain. This entry repr...  60.6    1e-12


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 184 bits (469),  Expect = 4e-56, Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 93/131 (71%), Gaps = 3/131 (2%)

Query  259  ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI  318
            +L+YGPPGTGKT +A+AVA E GA F  I+G E++SK  GESE  LR+ FE A+K +P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  319  IFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKAR-SNVVVMAATNRPNSIDPALRR  377
            IFIDEID++A  R        RRVV+QLLT +DG  +  S V+V+AATNRP+ +DPAL  
Sbjct  61   IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPALL-  119

Query  378  FGRFDREVDIG  388
             GRFDR ++  
Sbjct  120  -GRFDRIIEFP  129


 Score = 137 bits (348),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 52/93 (56%), Positives = 66/93 (71%), Gaps = 3/93 (3%)

Query  533  VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV  592
            +L YGPPGTGKT LAKAVA E  A FI + G EL+S + GESE  +R++F+ A+  APCV
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  593  VFLDELDSIAKSRGGSVGDAGGASDRVVNQLLT  625
            +F+DE+D++A SRG         S RVVNQLLT
Sbjct  61   IFIDEIDALAGSRGSG---GDSESRRVVNQLLT  90


>CDD:426738 pfam02359, CDC48_N, Cell division protein 48 (CDC48), N-terminal 
domain.  This domain has a double psi-beta barrel fold and 
includes VCP-like ATPase and N-ethylmaleimide sensitive fusion 
protein N-terminal domains. Both the VAT and NSF N-terminal 
functional domains consist of two structural domains of 
which this is at the N-terminus. The VAT-N domain found in 
AAA ATPases pfam00004 is a substrate 185-residue recognition 
domain.
Length=85

 Score = 82.6 bits (205),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 32/87 (37%), Positives = 44/87 (51%), Gaps = 6/87 (7%)

Query  43   SLIVTDAVNDD--NSVIALSNNTMETLQLFRGDTVLVKGKKRKDTVLIVLADDDLDD--G  98
             L V +A + D    +  L+   ME L LF GD V +KGK++  TV IV +    D+  G
Sbjct  1    RLRVAEAPDRDVGRGIARLNPEDMEELGLFPGDVVEIKGKRK--TVAIVWSAYPEDEGPG  58

Query  99   SARINRVVRHNLRVKHGDIITVHPCPD  125
              R++ V R N  V  GD +TV P   
Sbjct  59   IIRMDGVTRKNAGVSIGDTVTVRPAEV  85


>CDD:465537 pfam17862, AAA_lid_3, AAA+ lid domain.  This entry represents 
the alpha helical AAA+ lid domain that is found to the C-terminus 
of AAA domains.
Length=45

 Score = 60.6 bits (148),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 28/42 (67%), Gaps = 0/42 (0%)

Query  411  DVDLETIAAETHGYVGSDLASLCSEAAMQQIREKMDLIDLDE  452
            DVDLE +A  T G+ G+DL +LC EAA+  +R  ++ +  ++
Sbjct  1    DVDLEELAERTEGFSGADLEALCREAALAALRRGLEAVTQED  42



Lambda      K        H        a         alpha
   0.317    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 805235340


Query= TCONS_00018736

Length=819
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  184     3e-55
CDD:426738 pfam02359, CDC48_N, Cell division protein 48 (CDC48), ...  82.6    9e-20
CDD:465537 pfam17862, AAA_lid_3, AAA+ lid domain. This entry repr...  60.2    2e-12


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 184 bits (469),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 93/131 (71%), Gaps = 3/131 (2%)

Query  259  ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI  318
            +L+YGPPGTGKT +A+AVA E GA F  I+G E++SK  GESE  LR+ FE A+K +P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  319  IFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKAR-SNVVVMAATNRPNSIDPALRR  377
            IFIDEID++A  R        RRVV+QLLT +DG  +  S V+V+AATNRP+ +DPAL  
Sbjct  61   IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPALL-  119

Query  378  FGRFDREVDIG  388
             GRFDR ++  
Sbjct  120  -GRFDRIIEFP  129


 Score = 183 bits (468),  Expect = 4e-55, Method: Composition-based stats.
 Identities = 74/135 (55%), Positives = 94/135 (70%), Gaps = 6/135 (4%)

Query  533  VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV  592
            +L YGPPGTGKT LAKAVA E  A FI + G EL+S + GESE  +R++F+ A+  APCV
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  593  VFLDELDSIAKSRGGSVGDAGGASDRVVNQLLTEMDGMTSKK-NVFVIGATNRPEQLDAA  651
            +F+DE+D++A SRG         S RVVNQLLTE+DG TS    V VI ATNRP++LD A
Sbjct  61   IFIDEIDALAGSRGSG---GDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPA  117

Query  652  LVRPGRLDTLVYVPL  666
            L+  GR D ++  PL
Sbjct  118  LL--GRFDRIIEFPL  130


>CDD:426738 pfam02359, CDC48_N, Cell division protein 48 (CDC48), N-terminal 
domain.  This domain has a double psi-beta barrel fold and 
includes VCP-like ATPase and N-ethylmaleimide sensitive fusion 
protein N-terminal domains. Both the VAT and NSF N-terminal 
functional domains consist of two structural domains of 
which this is at the N-terminus. The VAT-N domain found in 
AAA ATPases pfam00004 is a substrate 185-residue recognition 
domain.
Length=85

 Score = 82.6 bits (205),  Expect = 9e-20, Method: Composition-based stats.
 Identities = 32/87 (37%), Positives = 44/87 (51%), Gaps = 6/87 (7%)

Query  43   SLIVTDAVNDD--NSVIALSNNTMETLQLFRGDTVLVKGKKRKDTVLIVLADDDLDD--G  98
             L V +A + D    +  L+   ME L LF GD V +KGK++  TV IV +    D+  G
Sbjct  1    RLRVAEAPDRDVGRGIARLNPEDMEELGLFPGDVVEIKGKRK--TVAIVWSAYPEDEGPG  58

Query  99   SARINRVVRHNLRVKHGDIITVHPCPD  125
              R++ V R N  V  GD +TV P   
Sbjct  59   IIRMDGVTRKNAGVSIGDTVTVRPAEV  85


>CDD:465537 pfam17862, AAA_lid_3, AAA+ lid domain.  This entry represents 
the alpha helical AAA+ lid domain that is found to the C-terminus 
of AAA domains.
Length=45

 Score = 60.2 bits (147),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 28/42 (67%), Gaps = 0/42 (0%)

Query  411  DVDLETIAAETHGYVGSDLASLCSEAAMQQIREKMDLIDLDE  452
            DVDLE +A  T G+ G+DL +LC EAA+  +R  ++ +  ++
Sbjct  1    DVDLEELAERTEGFSGADLEALCREAALAALRRGLEAVTQED  42



Lambda      K        H        a         alpha
   0.316    0.135    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1039312136


Query= TCONS_00013303

Length=639
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  184     4e-56
CDD:426738 pfam02359, CDC48_N, Cell division protein 48 (CDC48), ...  82.6    7e-20
CDD:465537 pfam17862, AAA_lid_3, AAA+ lid domain. This entry repr...  60.6    1e-12


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 184 bits (469),  Expect = 4e-56, Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 93/131 (71%), Gaps = 3/131 (2%)

Query  259  ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI  318
            +L+YGPPGTGKT +A+AVA E GA F  I+G E++SK  GESE  LR+ FE A+K +P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  319  IFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKAR-SNVVVMAATNRPNSIDPALRR  377
            IFIDEID++A  R        RRVV+QLLT +DG  +  S V+V+AATNRP+ +DPAL  
Sbjct  61   IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPALL-  119

Query  378  FGRFDREVDIG  388
             GRFDR ++  
Sbjct  120  -GRFDRIIEFP  129


 Score = 137 bits (348),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 52/93 (56%), Positives = 66/93 (71%), Gaps = 3/93 (3%)

Query  533  VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV  592
            +L YGPPGTGKT LAKAVA E  A FI + G EL+S + GESE  +R++F+ A+  APCV
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  593  VFLDELDSIAKSRGGSVGDAGGASDRVVNQLLT  625
            +F+DE+D++A SRG         S RVVNQLLT
Sbjct  61   IFIDEIDALAGSRGSG---GDSESRRVVNQLLT  90


>CDD:426738 pfam02359, CDC48_N, Cell division protein 48 (CDC48), N-terminal 
domain.  This domain has a double psi-beta barrel fold and 
includes VCP-like ATPase and N-ethylmaleimide sensitive fusion 
protein N-terminal domains. Both the VAT and NSF N-terminal 
functional domains consist of two structural domains of 
which this is at the N-terminus. The VAT-N domain found in 
AAA ATPases pfam00004 is a substrate 185-residue recognition 
domain.
Length=85

 Score = 82.6 bits (205),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 32/87 (37%), Positives = 44/87 (51%), Gaps = 6/87 (7%)

Query  43   SLIVTDAVNDD--NSVIALSNNTMETLQLFRGDTVLVKGKKRKDTVLIVLADDDLDD--G  98
             L V +A + D    +  L+   ME L LF GD V +KGK++  TV IV +    D+  G
Sbjct  1    RLRVAEAPDRDVGRGIARLNPEDMEELGLFPGDVVEIKGKRK--TVAIVWSAYPEDEGPG  58

Query  99   SARINRVVRHNLRVKHGDIITVHPCPD  125
              R++ V R N  V  GD +TV P   
Sbjct  59   IIRMDGVTRKNAGVSIGDTVTVRPAEV  85


>CDD:465537 pfam17862, AAA_lid_3, AAA+ lid domain.  This entry represents 
the alpha helical AAA+ lid domain that is found to the C-terminus 
of AAA domains.
Length=45

 Score = 60.6 bits (148),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 28/42 (67%), Gaps = 0/42 (0%)

Query  411  DVDLETIAAETHGYVGSDLASLCSEAAMQQIREKMDLIDLDE  452
            DVDLE +A  T G+ G+DL +LC EAA+  +R  ++ +  ++
Sbjct  1    DVDLEELAERTEGFSGADLEALCREAALAALRRGLEAVTQED  42



Lambda      K        H        a         alpha
   0.317    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 805235340


Query= TCONS_00013304

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  184     2e-57
CDD:465537 pfam17862, AAA_lid_3, AAA+ lid domain. This entry repr...  60.6    8e-13


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 184 bits (469),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 93/131 (71%), Gaps = 3/131 (2%)

Query  84   ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI  143
            +L+YGPPGTGKT +A+AVA E GA F  I+G E++SK  GESE  LR+ FE A+K +P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  144  IFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKAR-SNVVVMAATNRPNSIDPALRR  202
            IFIDEID++A  R        RRVV+QLLT +DG  +  S V+V+AATNRP+ +DPAL  
Sbjct  61   IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPALL-  119

Query  203  FGRFDREVDIG  213
             GRFDR ++  
Sbjct  120  -GRFDRIIEFP  129


 Score = 137 bits (348),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 52/93 (56%), Positives = 66/93 (71%), Gaps = 3/93 (3%)

Query  358  VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV  417
            +L YGPPGTGKT LAKAVA E  A FI + G EL+S + GESE  +R++F+ A+  APCV
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  418  VFLDELDSIAKSRGGSVGDAGGASDRVVNQLLT  450
            +F+DE+D++A SRG         S RVVNQLLT
Sbjct  61   IFIDEIDALAGSRGSG---GDSESRRVVNQLLT  90


>CDD:465537 pfam17862, AAA_lid_3, AAA+ lid domain.  This entry represents 
the alpha helical AAA+ lid domain that is found to the C-terminus 
of AAA domains.
Length=45

 Score = 60.6 bits (148),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 28/42 (67%), Gaps = 0/42 (0%)

Query  236  DVDLETIAAETHGYVGSDLASLCSEAAMQQIREKMDLIDLDE  277
            DVDLE +A  T G+ G+DL +LC EAA+  +R  ++ +  ++
Sbjct  1    DVDLEELAERTEGFSGADLEALCREAALAALRRGLEAVTQED  42



Lambda      K        H        a         alpha
   0.317    0.136    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 573605296


Query= TCONS_00013305

Length=819
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  184     3e-55
CDD:426738 pfam02359, CDC48_N, Cell division protein 48 (CDC48), ...  82.6    9e-20
CDD:465537 pfam17862, AAA_lid_3, AAA+ lid domain. This entry repr...  60.2    2e-12


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 184 bits (469),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 93/131 (71%), Gaps = 3/131 (2%)

Query  259  ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI  318
            +L+YGPPGTGKT +A+AVA E GA F  I+G E++SK  GESE  LR+ FE A+K +P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  319  IFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKAR-SNVVVMAATNRPNSIDPALRR  377
            IFIDEID++A  R        RRVV+QLLT +DG  +  S V+V+AATNRP+ +DPAL  
Sbjct  61   IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPALL-  119

Query  378  FGRFDREVDIG  388
             GRFDR ++  
Sbjct  120  -GRFDRIIEFP  129


 Score = 183 bits (468),  Expect = 4e-55, Method: Composition-based stats.
 Identities = 74/135 (55%), Positives = 94/135 (70%), Gaps = 6/135 (4%)

Query  533  VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV  592
            +L YGPPGTGKT LAKAVA E  A FI + G EL+S + GESE  +R++F+ A+  APCV
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  593  VFLDELDSIAKSRGGSVGDAGGASDRVVNQLLTEMDGMTSKK-NVFVIGATNRPEQLDAA  651
            +F+DE+D++A SRG         S RVVNQLLTE+DG TS    V VI ATNRP++LD A
Sbjct  61   IFIDEIDALAGSRGSG---GDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPA  117

Query  652  LVRPGRLDTLVYVPL  666
            L+  GR D ++  PL
Sbjct  118  LL--GRFDRIIEFPL  130


>CDD:426738 pfam02359, CDC48_N, Cell division protein 48 (CDC48), N-terminal 
domain.  This domain has a double psi-beta barrel fold and 
includes VCP-like ATPase and N-ethylmaleimide sensitive fusion 
protein N-terminal domains. Both the VAT and NSF N-terminal 
functional domains consist of two structural domains of 
which this is at the N-terminus. The VAT-N domain found in 
AAA ATPases pfam00004 is a substrate 185-residue recognition 
domain.
Length=85

 Score = 82.6 bits (205),  Expect = 9e-20, Method: Composition-based stats.
 Identities = 32/87 (37%), Positives = 44/87 (51%), Gaps = 6/87 (7%)

Query  43   SLIVTDAVNDD--NSVIALSNNTMETLQLFRGDTVLVKGKKRKDTVLIVLADDDLDD--G  98
             L V +A + D    +  L+   ME L LF GD V +KGK++  TV IV +    D+  G
Sbjct  1    RLRVAEAPDRDVGRGIARLNPEDMEELGLFPGDVVEIKGKRK--TVAIVWSAYPEDEGPG  58

Query  99   SARINRVVRHNLRVKHGDIITVHPCPD  125
              R++ V R N  V  GD +TV P   
Sbjct  59   IIRMDGVTRKNAGVSIGDTVTVRPAEV  85


>CDD:465537 pfam17862, AAA_lid_3, AAA+ lid domain.  This entry represents 
the alpha helical AAA+ lid domain that is found to the C-terminus 
of AAA domains.
Length=45

 Score = 60.2 bits (147),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 28/42 (67%), Gaps = 0/42 (0%)

Query  411  DVDLETIAAETHGYVGSDLASLCSEAAMQQIREKMDLIDLDE  452
            DVDLE +A  T G+ G+DL +LC EAA+  +R  ++ +  ++
Sbjct  1    DVDLEELAERTEGFSGADLEALCREAALAALRRGLEAVTQED  42



Lambda      K        H        a         alpha
   0.316    0.135    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1039312136


Query= TCONS_00018737

Length=644
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  184     5e-56
CDD:465537 pfam17862, AAA_lid_3, AAA+ lid domain. This entry repr...  60.2    2e-12


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 184 bits (469),  Expect = 5e-56, Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 93/131 (71%), Gaps = 3/131 (2%)

Query  84   ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI  143
            +L+YGPPGTGKT +A+AVA E GA F  I+G E++SK  GESE  LR+ FE A+K +P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  144  IFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKAR-SNVVVMAATNRPNSIDPALRR  202
            IFIDEID++A  R        RRVV+QLLT +DG  +  S V+V+AATNRP+ +DPAL  
Sbjct  61   IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPALL-  119

Query  203  FGRFDREVDIG  213
             GRFDR ++  
Sbjct  120  -GRFDRIIEFP  129


 Score = 183 bits (468),  Expect = 7e-56, Method: Composition-based stats.
 Identities = 74/135 (55%), Positives = 94/135 (70%), Gaps = 6/135 (4%)

Query  358  VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV  417
            +L YGPPGTGKT LAKAVA E  A FI + G EL+S + GESE  +R++F+ A+  APCV
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  418  VFLDELDSIAKSRGGSVGDAGGASDRVVNQLLTEMDGMTSKK-NVFVIGATNRPEQLDAA  476
            +F+DE+D++A SRG         S RVVNQLLTE+DG TS    V VI ATNRP++LD A
Sbjct  61   IFIDEIDALAGSRGSG---GDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPA  117

Query  477  LVRPGRLDTLVYVPL  491
            L+  GR D ++  PL
Sbjct  118  LL--GRFDRIIEFPL  130


>CDD:465537 pfam17862, AAA_lid_3, AAA+ lid domain.  This entry represents 
the alpha helical AAA+ lid domain that is found to the C-terminus 
of AAA domains.
Length=45

 Score = 60.2 bits (147),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 28/42 (67%), Gaps = 0/42 (0%)

Query  236  DVDLETIAAETHGYVGSDLASLCSEAAMQQIREKMDLIDLDE  277
            DVDLE +A  T G+ G+DL +LC EAA+  +R  ++ +  ++
Sbjct  1    DVDLEELAERTEGFSGADLEALCREAALAALRRGLEAVTQED  42



Lambda      K        H        a         alpha
   0.316    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 812609290


Query= TCONS_00013306

Length=756
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  183     3e-55
CDD:426738 pfam02359, CDC48_N, Cell division protein 48 (CDC48), ...  69.9    2e-15
CDD:465537 pfam17862, AAA_lid_3, AAA+ lid domain. This entry repr...  60.2    2e-12


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 183 bits (468),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 93/131 (71%), Gaps = 3/131 (2%)

Query  196  ILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAI  255
            +L+YGPPGTGKT +A+AVA E GA F  I+G E++SK  GESE  LR+ FE A+K +P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  256  IFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKAR-SNVVVMAATNRPNSIDPALRR  314
            IFIDEID++A  R        RRVV+QLLT +DG  +  S V+V+AATNRP+ +DPAL  
Sbjct  61   IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPALL-  119

Query  315  FGRFDREVDIG  325
             GRFDR ++  
Sbjct  120  -GRFDRIIEFP  129


 Score = 183 bits (467),  Expect = 4e-55, Method: Composition-based stats.
 Identities = 74/135 (55%), Positives = 94/135 (70%), Gaps = 6/135 (4%)

Query  470  VLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCV  529
            +L YGPPGTGKT LAKAVA E  A FI + G EL+S + GESE  +R++F+ A+  APCV
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  530  VFLDELDSIAKSRGGSVGDAGGASDRVVNQLLTEMDGMTSKK-NVFVIGATNRPEQLDAA  588
            +F+DE+D++A SRG         S RVVNQLLTE+DG TS    V VI ATNRP++LD A
Sbjct  61   IFIDEIDALAGSRGSG---GDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPA  117

Query  589  LVRPGRLDTLVYVPL  603
            L+  GR D ++  PL
Sbjct  118  LL--GRFDRIIEFPL  130


>CDD:426738 pfam02359, CDC48_N, Cell division protein 48 (CDC48), N-terminal 
domain.  This domain has a double psi-beta barrel fold and 
includes VCP-like ATPase and N-ethylmaleimide sensitive fusion 
protein N-terminal domains. Both the VAT and NSF N-terminal 
functional domains consist of two structural domains of 
which this is at the N-terminus. The VAT-N domain found in 
AAA ATPases pfam00004 is a substrate 185-residue recognition 
domain.
Length=85

 Score = 69.9 bits (172),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 35/64 (55%), Gaps = 4/64 (6%)

Query  1   METLQLFRGDTVLVKGKKRKDTVLIVLADDDLDD--GSARINRVVRHNLRVKHGDIITVH  58
           ME L LF GD V +KGK++  TV IV +    D+  G  R++ V R N  V  GD +TV 
Sbjct  24  MEELGLFPGDVVEIKGKRK--TVAIVWSAYPEDEGPGIIRMDGVTRKNAGVSIGDTVTVR  81

Query  59  PCPD  62
           P   
Sbjct  82  PAEV  85


>CDD:465537 pfam17862, AAA_lid_3, AAA+ lid domain.  This entry represents 
the alpha helical AAA+ lid domain that is found to the C-terminus 
of AAA domains.
Length=45

 Score = 60.2 bits (147),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 28/42 (67%), Gaps = 0/42 (0%)

Query  348  DVDLETIAAETHGYVGSDLASLCSEAAMQQIREKMDLIDLDE  389
            DVDLE +A  T G+ G+DL +LC EAA+  +R  ++ +  ++
Sbjct  1    DVDLEELAERTEGFSGADLEALCREAALAALRRGLEAVTQED  42



Lambda      K        H        a         alpha
   0.317    0.136    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 963310624


Query= TCONS_00018738

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  153     1e-47


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 153 bits (388),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 64/123 (52%), Positives = 83/123 (67%), Gaps = 6/123 (5%)

Query  1    MLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKS  60
             LAKAVA E  A FI + G EL+S + GESE  +R++F+ A+  APCV+F+DE+D++A S
Sbjct  13   TLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGS  72

Query  61   RGGSVGDAGGASDRVVNQLLTEMDGMTSKK-NVFVIGATNRPEQLDAALVRPGRLDTLVY  119
            RG         S RVVNQLLTE+DG TS    V VI ATNRP++LD AL+  GR D ++ 
Sbjct  73   RGSG---GDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPALL--GRFDRIIE  127

Query  120  VPL  122
             PL
Sbjct  128  FPL  130



Lambda      K        H        a         alpha
   0.315    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00013307

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  153     1e-47


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 153 bits (388),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 64/123 (52%), Positives = 83/123 (67%), Gaps = 6/123 (5%)

Query  1    MLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKS  60
             LAKAVA E  A FI + G EL+S + GESE  +R++F+ A+  APCV+F+DE+D++A S
Sbjct  13   TLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGS  72

Query  61   RGGSVGDAGGASDRVVNQLLTEMDGMTSKK-NVFVIGATNRPEQLDAALVRPGRLDTLVY  119
            RG         S RVVNQLLTE+DG TS    V VI ATNRP++LD AL+  GR D ++ 
Sbjct  73   RGSG---GDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPALL--GRFDRIIE  127

Query  120  VPL  122
             PL
Sbjct  128  FPL  130



Lambda      K        H        a         alpha
   0.315    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00013308

Length=182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429573 pfam07647, SAM_2, SAM domain (Sterile alpha motif)         69.6    6e-17
CDD:425739 pfam00536, SAM_1, SAM domain (Sterile alpha motif). It...  67.7    3e-16


>CDD:429573 pfam07647, SAM_2, SAM domain (Sterile alpha motif).  
Length=66

 Score = 69.6 bits (171),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 37/59 (63%), Gaps = 1/59 (2%)

Query  67   WTAEECANWLAALGLRQYCATFLENEIVGEALIA-LKHEELKEMGITSVGHRLTILKSV  124
            W+ E  A+WL ++GL QY   F +  I G  L+  L  E+LK +GITSVGHR  ILK +
Sbjct  4    WSLESVADWLRSIGLEQYTDNFRDQGITGAELLLRLTLEDLKRLGITSVGHRRKILKKI  62


>CDD:425739 pfam00536, SAM_1, SAM domain (Sterile alpha motif).  It has been 
suggested that SAM is an evolutionarily conserved protein 
binding domain that is involved in the regulation of numerous 
developmental processes in diverse eukaryotes. The SAM domain 
can potentially function as a protein interaction module 
through its ability to homo- and heterooligomerize with other 
SAM domains.
Length=64

 Score = 67.7 bits (166),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 37/59 (63%), Gaps = 0/59 (0%)

Query  66   EWTAEECANWLAALGLRQYCATFLENEIVGEALIALKHEELKEMGITSVGHRLTILKSV  124
             W+ E+   WL ++GL QY  +F    I G+AL+ L  ++L ++G+T +GHR  IL ++
Sbjct  2    GWSVEDVGEWLESIGLGQYIDSFRAGYIDGDALLQLTEDDLLKLGVTLLGHRKKILYAI  60



Lambda      K        H        a         alpha
   0.312    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00013311

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425871 pfam00788, RA, Ras association (RalGDS/AF-6) domain. R...  63.5    2e-13


>CDD:425871 pfam00788, RA, Ras association (RalGDS/AF-6) domain.  RasGTP 
effectors (in cases of AF6, canoe and RalGDS); putative RasGTP 
effectors in other cases. Recent evidence (not yet in MEDLINE) 
shows that some RA domains do NOT bind RasGTP. Predicted 
structure similar to that determined, and that of the RasGTP-binding 
domain of Raf kinase.
Length=93

 Score = 63.5 bits (155),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 23/80 (29%), Positives = 37/80 (46%), Gaps = 2/80 (3%)

Query  227  DPPSVEIFKSFRVSMDDPCHKVLPAALKKYNINADWKQYAL--YIVYGDQERCLGLEERP  284
            D      +K+  VS      +V+ A L+K+ +  D + Y L   +  G  ER L  +E P
Sbjct  11   DGKPGTTYKTILVSSSTTAEEVIEALLEKFGLEDDPRDYVLVEVLERGGGERRLPDDECP  70

Query  285  LILFKQLEKEGRKPMFMLRK  304
            L +  Q  ++     F+LRK
Sbjct  71   LQIQLQWPRDASDSRFLLRK  90



Lambda      K        H        a         alpha
   0.312    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00013309

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425871 pfam00788, RA, Ras association (RalGDS/AF-6) domain. R...  63.5    2e-13


>CDD:425871 pfam00788, RA, Ras association (RalGDS/AF-6) domain.  RasGTP 
effectors (in cases of AF6, canoe and RalGDS); putative RasGTP 
effectors in other cases. Recent evidence (not yet in MEDLINE) 
shows that some RA domains do NOT bind RasGTP. Predicted 
structure similar to that determined, and that of the RasGTP-binding 
domain of Raf kinase.
Length=93

 Score = 63.5 bits (155),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 23/80 (29%), Positives = 37/80 (46%), Gaps = 2/80 (3%)

Query  227  DPPSVEIFKSFRVSMDDPCHKVLPAALKKYNINADWKQYAL--YIVYGDQERCLGLEERP  284
            D      +K+  VS      +V+ A L+K+ +  D + Y L   +  G  ER L  +E P
Sbjct  11   DGKPGTTYKTILVSSSTTAEEVIEALLEKFGLEDDPRDYVLVEVLERGGGERRLPDDECP  70

Query  285  LILFKQLEKEGRKPMFMLRK  304
            L +  Q  ++     F+LRK
Sbjct  71   LQIQLQWPRDASDSRFLLRK  90



Lambda      K        H        a         alpha
   0.312    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00013310

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429573 pfam07647, SAM_2, SAM domain (Sterile alpha motif)         71.9    2e-16
CDD:425739 pfam00536, SAM_1, SAM domain (Sterile alpha motif). It...  68.4    2e-15
CDD:425871 pfam00788, RA, Ras association (RalGDS/AF-6) domain. R...  63.5    4e-13


>CDD:429573 pfam07647, SAM_2, SAM domain (Sterile alpha motif).  
Length=66

 Score = 71.9 bits (177),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 37/59 (63%), Gaps = 1/59 (2%)

Query  67   WTAEECANWLAALGLRQYCATFLENEIVGEALIA-LKHEELKEMGITSVGHRLTILKSV  124
            W+ E  A+WL ++GL QY   F +  I G  L+  L  E+LK +GITSVGHR  ILK +
Sbjct  4    WSLESVADWLRSIGLEQYTDNFRDQGITGAELLLRLTLEDLKRLGITSVGHRRKILKKI  62


>CDD:425739 pfam00536, SAM_1, SAM domain (Sterile alpha motif).  It has been 
suggested that SAM is an evolutionarily conserved protein 
binding domain that is involved in the regulation of numerous 
developmental processes in diverse eukaryotes. The SAM domain 
can potentially function as a protein interaction module 
through its ability to homo- and heterooligomerize with other 
SAM domains.
Length=64

 Score = 68.4 bits (168),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 37/59 (63%), Gaps = 0/59 (0%)

Query  66   EWTAEECANWLAALGLRQYCATFLENEIVGEALIALKHEELKEMGITSVGHRLTILKSV  124
             W+ E+   WL ++GL QY  +F    I G+AL+ L  ++L ++G+T +GHR  IL ++
Sbjct  2    GWSVEDVGEWLESIGLGQYIDSFRAGYIDGDALLQLTEDDLLKLGVTLLGHRKKILYAI  60


>CDD:425871 pfam00788, RA, Ras association (RalGDS/AF-6) domain.  RasGTP 
effectors (in cases of AF6, canoe and RalGDS); putative RasGTP 
effectors in other cases. Recent evidence (not yet in MEDLINE) 
shows that some RA domains do NOT bind RasGTP. Predicted 
structure similar to that determined, and that of the RasGTP-binding 
domain of Raf kinase.
Length=93

 Score = 63.5 bits (155),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 23/80 (29%), Positives = 37/80 (46%), Gaps = 2/80 (3%)

Query  375  DPPSVEIFKSFRVSMDDPCHKVLPAALKKYNINADWKQYAL--YIVYGDQERCLGLEERP  432
            D      +K+  VS      +V+ A L+K+ +  D + Y L   +  G  ER L  +E P
Sbjct  11   DGKPGTTYKTILVSSSTTAEEVIEALLEKFGLEDDPRDYVLVEVLERGGGERRLPDDECP  70

Query  433  LILFKQLEKEGRKPMFMLRK  452
            L +  Q  ++     F+LRK
Sbjct  71   LQIQLQWPRDASDSRFLLRK  90



Lambda      K        H        a         alpha
   0.312    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0758    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00013313

Length=693
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463143 pfam10544, T5orf172, T5orf172 domain. This domain was ...  86.4    5e-21
CDD:372608 pfam13455, MUG113, Meiotically up-regulated gene 113. ...  68.9    3e-15


>CDD:463143 pfam10544, T5orf172, T5orf172 domain.  This domain was identified 
by Iyer and colleagues.
Length=99

 Score = 86.4 bits (214),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 28/104 (27%), Positives = 51/104 (49%), Gaps = 7/104 (7%)

Query  512  GSVYVYWQPGNFGH-LKIGFSNDISKRVKEWSAKCRKPMEVYFPKRGSDEEHLQVSHVCR  570
            G +Y+   P N G   KIG ++++ +R++E S         +      + +  +V +  R
Sbjct  1    GYIYILTNPSNPGLIFKIGRTSNLQRRLRELSKSSTSVPFEFSV--IYEIKVRKVPNAFR  58

Query  571  VEKLVHTELKNYRRIEEKCPGCGGNHIEWFEVSRQLAIAVVRKW  614
            +E+L+H EL ++R        C   H EWFEVS +    +V++ 
Sbjct  59   LERLIHKELADFRYRVN----CPCGHREWFEVSLEEVDEIVKRI  98


>CDD:372608 pfam13455, MUG113, Meiotically up-regulated gene 113.  This is 
a family of fungal proteins found to be up-regulated in meiosis.
Length=73

 Score = 68.9 bits (169),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 21/89 (24%), Positives = 41/89 (46%), Gaps = 16/89 (18%)

Query  526  LKIGFSNDISKRVKEWSAKCRKPMEVYFPKRGSDEEHLQVSHVCRVEKLVHTELKNYRRI  585
             KIG + ++ KR+KE +++     +V          +   +   ++E+L+H ELK YR  
Sbjct  1    YKIGRTRNVEKRLKELNSQSPFKFDVVA-------SYESTNDARKLERLLHRELKEYRLN  53

Query  586  EEKCPGCGGNHIEWFEVSRQLAIAVVRKW  614
                        EWF+++ +    VV++ 
Sbjct  54   GGN---------EWFKLNLEQLKEVVKRI  73



Lambda      K        H        a         alpha
   0.312    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 884874000


Query= TCONS_00013314

Length=693
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463143 pfam10544, T5orf172, T5orf172 domain. This domain was ...  86.4    5e-21
CDD:372608 pfam13455, MUG113, Meiotically up-regulated gene 113. ...  68.9    3e-15


>CDD:463143 pfam10544, T5orf172, T5orf172 domain.  This domain was identified 
by Iyer and colleagues.
Length=99

 Score = 86.4 bits (214),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 28/104 (27%), Positives = 51/104 (49%), Gaps = 7/104 (7%)

Query  512  GSVYVYWQPGNFGH-LKIGFSNDISKRVKEWSAKCRKPMEVYFPKRGSDEEHLQVSHVCR  570
            G +Y+   P N G   KIG ++++ +R++E S         +      + +  +V +  R
Sbjct  1    GYIYILTNPSNPGLIFKIGRTSNLQRRLRELSKSSTSVPFEFSV--IYEIKVRKVPNAFR  58

Query  571  VEKLVHTELKNYRRIEEKCPGCGGNHIEWFEVSRQLAIAVVRKW  614
            +E+L+H EL ++R        C   H EWFEVS +    +V++ 
Sbjct  59   LERLIHKELADFRYRVN----CPCGHREWFEVSLEEVDEIVKRI  98


>CDD:372608 pfam13455, MUG113, Meiotically up-regulated gene 113.  This is 
a family of fungal proteins found to be up-regulated in meiosis.
Length=73

 Score = 68.9 bits (169),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 21/89 (24%), Positives = 41/89 (46%), Gaps = 16/89 (18%)

Query  526  LKIGFSNDISKRVKEWSAKCRKPMEVYFPKRGSDEEHLQVSHVCRVEKLVHTELKNYRRI  585
             KIG + ++ KR+KE +++     +V          +   +   ++E+L+H ELK YR  
Sbjct  1    YKIGRTRNVEKRLKELNSQSPFKFDVVA-------SYESTNDARKLERLLHRELKEYRLN  53

Query  586  EEKCPGCGGNHIEWFEVSRQLAIAVVRKW  614
                        EWF+++ +    VV++ 
Sbjct  54   GGN---------EWFKLNLEQLKEVVKRI  73



Lambda      K        H        a         alpha
   0.312    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 884874000


Query= TCONS_00013315

Length=1085
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425982 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger f...  246     3e-73
CDD:400785 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter N...  235     4e-70


>CDD:425982 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. 
 Na/H antiporters are key transporters in maintaining the pH 
of actively metabolising cells. The molecular mechanisms of 
antiport are unclear. These antiporters contain 10-12 transmembrane 
regions (M) at the amino-terminus and a large cytoplasmic 
region at the carboxyl terminus. The transmembrane regions 
M3-M12 share identity with other members of the family. 
The M6 and M7 regions are highly conserved. Thus, this is 
thought to be the region that is involved in the transport of 
sodium and hydrogen ions. The cytoplasmic region has little 
similarity throughout the family.
Length=377

 Score = 246 bits (629),  Expect = 3e-73, Method: Composition-based stats.
 Identities = 99/413 (24%), Positives = 174/413 (42%), Gaps = 43/413 (10%)

Query  23   GLFMLCSLFVKEKLYIGEATVATLCGIIFGPHAANLFNPAEWGNVDKITLECSRIVLVVQ  82
             L  L +  +  +L +       + GI+ GP    L        VD+     S + L   
Sbjct  5    ILLALLAPLLARRLKLPPIVGLIIAGILLGPSGLGL-----ISEVDEDLEVLSNLGLPPL  59

Query  83   CFAVGVELPKAYMERHWKSVSLLLVPVMTWGWLVTSLFIWWMVPPLNWLESLVCAACVTA  142
             F  G+EL    + ++  S+ LL +  +   +++  L ++ +   +  LE+L+  A ++A
Sbjct  60   LFLAGLELDLRELRKNGGSILLLALLGVLIPFVLIGLLLYLLGLGIPLLEALLFGAILSA  119

Query  143  TDPVLASSVVGKGKFAKRVPKHLRDLLSAESGCNDGMAFPFIYLGFYILRYRPDAGKVSL  202
            T PV+  +++   K   RVP+ L  LL  ES  NDG+A   + +   + +     G   L
Sbjct  120  TSPVVVLAIL---KELGRVPERLGTLLLGESVLNDGVAVVLLAVLLALAQG--VGGGSDL  174

Query  203  NWFCVTILYECIFGAIYGFLIGYIARHAIKFAERKQLIDRESFLVFYFVLAVFCAGSGSL  262
             W  +  L   + G + G LIG++ R   +F +     DRE  ++   +LA+  A     
Sbjct  175  GWLLLIFLVVAVGGLLLGLLIGWLLRLITRFTDD----DRELEVLLVLLLALLAALLAEA  230

Query  263  LGMDDLLIGFACGVGFSNDGWFTEKTEESHVSNVIDLLLNLAYFVYFGSIIPWEDYNNPE  322
            LG+  +L  F  G+  S    F  K  E  +      L N  +FV  G  +         
Sbjct  231  LGVSGILGAFLAGLVLSE-YPFANKLSEK-LEPFGYGLFNPLFFVLVGLSLDL-----SS  283

Query  323  IGLVPWRLVVIAILVIFFRRIPIMMLLKPVIPDVKTWREALFAGHFGPIGVGAIFAAILT  382
            + L  W LV++A++ I   R   + LL  ++    + REAL  G FG +  GA+  A+  
Sbjct  284  LLLSVWILVLLALVAILLGRFLGVFLLLRLLG--LSLREALIIG-FGGLQRGAVSLALAA  340

Query  383  RAELETDSTQPLSEKELPQPGSPDYYIVQLIWPITTFMVISSILVHGSSIAVF  435
               L       +  +EL              +P+   +V+ ++LV G ++   
Sbjct  341  IGPLL-----GIIAREL--------------YPLLIVVVLFTVLVQGITLKPL  374


>CDD:400785 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C-terminus. 
 The C-terminus of the plasma membrane Nha1 antiporter 
plays an important role in the immediate cell response to 
hypo-osmotic shock which prevents an execessive loss of ions 
and water. This domain is found with pfam00999.
Length=323

 Score = 235 bits (601),  Expect = 4e-70, Method: Composition-based stats.
 Identities = 111/310 (36%), Positives = 148/310 (48%), Gaps = 65/310 (21%)

Query  460  WMNRLPRVQSLAKGSMSFRKTDGDDLGDSSTEPEFPPGTL-PPIGVPGNFLRRVREEE--  516
            WMNRLPR+ S ++     R    D  GD      FPPGTL PP+G PG FLRR +EE+  
Sbjct  1    WMNRLPRIDSQSRSFSLHRVDTSDTDGDELK---FPPGTLGPPVGPPGGFLRRQKEEDGS  57

Query  517  ---SETPTGRPSSRKTRRRRRRDDGAGGPISQSAIMPQRPAEAGEETEKAGGEAEKAGEE  573
               S + + R   R+ +++     G GGPISQSAI P R + + E++  +     ++   
Sbjct  58   KSKSRSSSLRERRRREKKKWDDGLGPGGPISQSAIFPSRRSLSDEDSPSSSEPDAESSST  117

Query  574  AEKSKEEAQEREKIERGGSPPTHERDRFGREPVVEVYLEGHTMIIEDEEGNVLKTEDISH  633
            + +S    +E +  ER GSPP  E DR  REP VE Y EG  +IIEDEEG VL  ED  H
Sbjct  118  SSES----EEEDDSEREGSPPRREEDRERREPPVEAYQEGDNIIIEDEEGEVLAVEDSPH  173

Query  634  KSPEERQQHVEEQKRQLQKDKSGELSKSRSQPHEKTEGEQIQHAVGDAAGPSLGKARKQF  693
            +  EE                                  + +H+  +A+G S+   +++ 
Sbjct  174  EEEEEEGST------------------------------REKHSEDEASGHSMNSLKRRL  203

Query  694  GKWVGWGKGRGEQAESKEAKKAAEKKSTESGKPAKPKARSAHAYQFGNTIIVEDEDGEVI  753
              W G                          K AK K   A AYQFGNTIIVEDEDGEVI
Sbjct  204  SPWSGKEVD----------------------KKAKRKHEPARAYQFGNTIIVEDEDGEVI  241

Query  754  KKYSIPAAGK  763
            K+Y I ++ K
Sbjct  242  KRYKISSSKK  251



Lambda      K        H        a         alpha
   0.316    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1379483144


Query= TCONS_00013316

Length=1006


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1288447160


Query= TCONS_00013317

Length=1006


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1288447160


Query= TCONS_00013319

Length=918


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1181428022


Query= TCONS_00013318

Length=772


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 986593056


Query= TCONS_00018741

Length=1195


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1533069324


Query= TCONS_00018742

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00013320

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00013325

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00013324

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00013323

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00013322

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00018743

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00018744

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00013326

Length=1195


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1533069324


Query= TCONS_00018745

Length=1195


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1533069324


Query= TCONS_00013327

Length=1174


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1503748326


Query= TCONS_00013328

Length=1195


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1533069324


Query= TCONS_00018746

Length=450


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00013330

Length=1058


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1362072712


Query= TCONS_00013331

Length=698


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 892247950


Query= TCONS_00013332

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00018748

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00013333

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00018750

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00018749

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00013334

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00013335

Length=332


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00013341

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00013336

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00013337

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            63.2    1e-11


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 63.2 bits (154),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 75/350 (21%), Positives = 126/350 (36%), Gaps = 15/350 (4%)

Query  25   FSFFVAGINDGSLGPLIP-YIRQAYHIDTNLVAVVYGTTFCGWLVAALSNSHLCQYLDLG  83
             + F+A +    LGP +P  + +   I    + ++      G+ +A      L       
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRR  62

Query  84   VLLALGAVLQVLAHALRTWLPPFPLFAVTFFFASLGQAYQDTHANTFVASVKAAH---RW  140
             +L +G +L  L   L  +     L  V      LG       A   +A         R 
Sbjct  63   RVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRA  122

Query  141  LGFIHAMYMAGCLVGPFVSTAVASAGMHSRWNLFYAAPLGLGVINLVLVIGAFHDSLRLT  200
            LG + A +  G  +GP +   +AS      W   +     L ++  VL++          
Sbjct  123  LGLVSAGFGLGAALGPLLGGLLASLF---GWRAAFLILAILSLLAAVLLLL----PRPPP  175

Query  201  QQFGQSPPESRQKGLQEMKQTLCTPSVWLLSLYFFFFLGAAITAGGWIVEYLVDVRDGDL  260
            +     P E  +  L    + L    V  L L    F  A      ++  Y  +V     
Sbjct  176  ESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLY-QEVLGLSA  234

Query  261  KDMGYVPAGFYGGGFLGRLLLAEPTYRWGERRMIFLYVVLCVGLQLMFWLVPNIITEA--  318
               G +       G +GRLLL   + R G RR + L ++L +   L   L+   ++    
Sbjct  235  LLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWL  294

Query  319  -VAISLFGFFSGPFFATGISVASKVFSAEIRSSALALVFVLGQVGGSIFP  367
             +A+ L GF  G  F    ++ S +   E R +A  L    G +GG++ P
Sbjct  295  LLALLLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.143    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00018751

Length=310


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 355153814


Query= TCONS_00013339

Length=247


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00013338

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.146    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00013340

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00013342

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00018753

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00013343

Length=363


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00013344

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00013346

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00018756

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00013347

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00013345

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00018757

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0817    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00013348

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00013349

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00013351

Length=212


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00013350

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.146    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00013352

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00018758

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.148    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00013353

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00013354

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.339    0.149    0.503    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00013355

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            92.1    4e-21


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 92.1 bits (229),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 83/320 (26%), Positives = 137/320 (43%), Gaps = 11/320 (3%)

Query  86   SASSISWILSLEPFVLFAAGIVLGRVFDNYGPKWMLLIGTFLHVFGLMMISVSSEYYQFL  145
            S + I  +L+L       A  + GR+ D +G + +LLIG  L   GL+++  +S  +  L
Sbjct  30   SPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLL  89

Query  146  LAQGICSPLGASFVFYPASACTATWF-DKRRALAFGIMSSGSSIGGVVFPAMLSRLLPRV  204
            + + +   LGA  +F  A A  A WF  + R  A G++S+G  +G  + P +   L    
Sbjct  90   VLRVLQG-LGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLF  148

Query  205  GFGWSLRISAFVVLALLAVANMTVRSRIAPVPR-----RVQFSDYIGPFSEVPFVLLMLA  259
            G+  +  I A + L    +  +      +  P+     R+            P + L+LA
Sbjct  149  GWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLA  208

Query  260  SCCGFWAMFVPINYVILEAQEDGVRRSLAEYLLTILNAASLPGRILPGYLGDKLGRFNVM  319
                 +A F  + Y+ L  +  G+   LA  LL +       GR+L G L D+LGR   +
Sbjct  209  LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRL  268

Query  320  IAMCTLSALTILVLWIPGTLLAPGSAAVYVIFSLLYGFASGAFVGMVPALLSQITADMSK  379
            +    L  L  L L +   L    S+   ++  LL GF  G     + AL+S + A   +
Sbjct  269  LLALLLLILAALGLLL---LSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDL-APKEE  324

Query  380  TGVRQGVLYTCMSIATLTGS  399
             G   G+  T  S+    G 
Sbjct  325  RGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00013356

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.142    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00018759

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            92.1    4e-21


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 92.1 bits (229),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 83/320 (26%), Positives = 137/320 (43%), Gaps = 11/320 (3%)

Query  86   SASSISWILSLEPFVLFAAGIVLGRVFDNYGPKWMLLIGTFLHVFGLMMISVSSEYYQFL  145
            S + I  +L+L       A  + GR+ D +G + +LLIG  L   GL+++  +S  +  L
Sbjct  30   SPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLL  89

Query  146  LAQGICSPLGASFVFYPASACTATWF-DKRRALAFGIMSSGSSIGGVVFPAMLSRLLPRV  204
            + + +   LGA  +F  A A  A WF  + R  A G++S+G  +G  + P +   L    
Sbjct  90   VLRVLQG-LGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLF  148

Query  205  GFGWSLRISAFVVLALLAVANMTVRSRIAPVPR-----RVQFSDYIGPFSEVPFVLLMLA  259
            G+  +  I A + L    +  +      +  P+     R+            P + L+LA
Sbjct  149  GWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLA  208

Query  260  SCCGFWAMFVPINYVILEAQEDGVRRSLAEYLLTILNAASLPGRILPGYLGDKLGRFNVM  319
                 +A F  + Y+ L  +  G+   LA  LL +       GR+L G L D+LGR   +
Sbjct  209  LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRL  268

Query  320  IAMCTLSALTILVLWIPGTLLAPGSAAVYVIFSLLYGFASGAFVGMVPALLSQITADMSK  379
            +    L  L  L L +   L    S+   ++  LL GF  G     + AL+S + A   +
Sbjct  269  LLALLLLILAALGLLL---LSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDL-APKEE  324

Query  380  TGVRQGVLYTCMSIATLTGS  399
             G   G+  T  S+    G 
Sbjct  325  RGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00018760

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            92.1    4e-21


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 92.1 bits (229),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 83/320 (26%), Positives = 137/320 (43%), Gaps = 11/320 (3%)

Query  86   SASSISWILSLEPFVLFAAGIVLGRVFDNYGPKWMLLIGTFLHVFGLMMISVSSEYYQFL  145
            S + I  +L+L       A  + GR+ D +G + +LLIG  L   GL+++  +S  +  L
Sbjct  30   SPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLL  89

Query  146  LAQGICSPLGASFVFYPASACTATWF-DKRRALAFGIMSSGSSIGGVVFPAMLSRLLPRV  204
            + + +   LGA  +F  A A  A WF  + R  A G++S+G  +G  + P +   L    
Sbjct  90   VLRVLQG-LGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLF  148

Query  205  GFGWSLRISAFVVLALLAVANMTVRSRIAPVPR-----RVQFSDYIGPFSEVPFVLLMLA  259
            G+  +  I A + L    +  +      +  P+     R+            P + L+LA
Sbjct  149  GWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLA  208

Query  260  SCCGFWAMFVPINYVILEAQEDGVRRSLAEYLLTILNAASLPGRILPGYLGDKLGRFNVM  319
                 +A F  + Y+ L  +  G+   LA  LL +       GR+L G L D+LGR   +
Sbjct  209  LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRL  268

Query  320  IAMCTLSALTILVLWIPGTLLAPGSAAVYVIFSLLYGFASGAFVGMVPALLSQITADMSK  379
            +    L  L  L L +   L    S+   ++  LL GF  G     + AL+S + A   +
Sbjct  269  LLALLLLILAALGLLL---LSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDL-APKEE  324

Query  380  TGVRQGVLYTCMSIATLTGS  399
             G   G+  T  S+    G 
Sbjct  325  RGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00013357

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00013358

Length=699


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 893722740


Query= TCONS_00013359

Length=846


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1078071014


Query= TCONS_00013360

Length=377
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogen...  187     7e-58
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  88.1    1e-20
CDD:427865 pfam04321, RmlD_sub_bind, RmlD substrate binding domai...  70.0    5e-14
CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  69.6    5e-14
CDD:426938 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesi...  64.5    3e-12
CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase      62.2    2e-11


>CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase 
family.  The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene 
isomerase (3 beta-HSD) catalyzes the oxidation 
and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene 
steroid precursors into the corresponding 
4-ene-ketosteroids necessary for the formation of all classes 
of steroid hormones.
Length=279

 Score = 187 bits (478),  Expect = 7e-58, Method: Composition-based stats.
 Identities = 94/274 (34%), Positives = 138/274 (50%), Gaps = 22/274 (8%)

Query  14   LVTGGSGGLASKILELFSQRGCKR-LHSIDIRQPSHLLHG------VTYHLGDLTDVDAM  66
            +VTGG G L   I++L  + G  + +   D+R+   LL        + Y  GD+TD D +
Sbjct  1    VVTGGGGFLGRHIIKLLVREGELKEVRVFDLRESPELLEDFSKSNVIKYIQGDVTDKDDL  60

Query  67   RQIFHEVKPDVVIHTASP---RFDTPNHIMYKVNVEGTKNLVQIAQESGAHSFVYTSSAS  123
                  V  DVVIHTAS            + KVNV+GT+N+++   ++G    VYTSSA 
Sbjct  61   DNALEGV--DVVIHTASAVDVFGKYTFDEIMKVNVKGTQNVLEACVKAGVRVLVYTSSAE  118

Query  124  VISD--GKTDLENADESYPVILGDQQPEYYTHTKALAETYVLLQNHRSEGTSPQFLTCAI  181
            V+        + N DE  P     Q    Y  +KA+AE  VL  N R      +  TCA+
Sbjct  119  VVGPNSYGQPILNGDEETPYESTHQDA--YPRSKAIAEKLVLKANGRPLKNGGRLYTCAL  176

Query  182  RPSGIFGVGDLVLLPGMLDAYFRGQTKVQIGNNKNLFDFTENTNVAYSHYLAAAALVTCQ  241
            RP+GI+G GD +L+P +++    G  K + G++ NL D     NVA++H LAA AL    
Sbjct  177  RPAGIYGEGDRLLVPFIVNLAKLGLAKFKTGDDNNLSDRVYVGNVAWAHILAARALQD--  234

Query  242  NSLPGDDAKVDGEAFFITNDEPIY-FWDFTRLVW  274
               P   + + G A+FI +D P+  + DF R + 
Sbjct  235  ---PKKMSSIAGNAYFIYDDTPVQSYDDFNRTLL  265


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 88.1 bits (219),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 27/223 (12%)

Query  13   VLVTGGSGGLASKILELFSQRGCKRLHSIDIRQPSH---LLHGVTYHLGDLTDVDAMRQI  69
            +LVTG +G + S ++    ++G   +  +D    +     L  + +  GDLTD DA+ ++
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGY-EVIGLDRLTSASNTARLADLRFVEGDLTDRDALEKL  59

Query  70   FHEVKPDVVIHTASP-----RFDTPNHIMYKVNVEGTKNLVQIAQESGAHSFVYTSSASV  124
              +V+PD VIH A+        + P   +   NV GT NL++ A+++G   F++ SS+ V
Sbjct  60   LADVRPDAVIHLAAVGGVGASIEDPEDFIE-ANVLGTLNLLEAARKAGVKRFLFASSSEV  118

Query  125  ISDGKTD-LENADESYPVILGDQQP-EYYTHTKALAETYVLLQNHRSEGTSPQFLTCAIR  182
              DG     E    + P+      P   Y   K   E  V    + +           +R
Sbjct  119  YGDGAEIPQEETTLTGPL-----APNSPYAAAKLAGEWLV--LAYAAAYGLR---AVILR  168

Query  183  PSGIFGVGDLV-----LLPGMLDAYFRGQTKVQIGNNKNLFDF  220
               ++G GD       ++P ++     G+  +  G+     DF
Sbjct  169  LFNVYGPGDNEGFVSRVIPALIRRILEGKPILLWGDGTQRRDF  211


>CDD:427865 pfam04321, RmlD_sub_bind, RmlD substrate binding domain.  L-rhamnose 
is a saccharide required for the virulence of some bacteria. 
Its precursor, dTDP-L-rhamnose, is synthesized by four 
different enzymes the final one of which is RmlD. The RmlD 
substrate binding domain is responsible for binding a sugar 
nucleotide.
Length=284

 Score = 70.0 bits (172),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 72/189 (38%), Gaps = 51/189 (27%)

Query  13   VLVTGGSGGLASKILELFSQRGCKRLHSIDIRQPSHLLHGVTYHLGDLTDVDAMRQIFHE  72
            +L+TG +G L +++  L ++RG               +  +T    DLTD +A+ ++  E
Sbjct  1    ILITGANGQLGTELRRLLAERG-------------IEVVALTRAELDLTDPEAVARLLRE  47

Query  73   VKPDVVIHTAS----------PRFDTPNHIMYKVNVEGTKNLVQIAQESGAHSFVYTSSA  122
            +KPDVV++ A+          P         Y +N     NL +     GA   ++ S+ 
Sbjct  48   IKPDVVVNAAAYTAVDKAESEPDLA------YAINALAPANLAEACAAVGAP-LIHISTD  100

Query  123  SVISDGKTDLENADESYPVILGDQQPE---YYTHTKALAETYVLLQNHRSEGTSPQFLTC  179
             V  DG          Y     D +      Y  TK   E  V           P+ L  
Sbjct  101  YVF-DG-----TKPRPYEE---DDETNPLNVYGRTKLAGEQAVRAAG-------PRHLI-  143

Query  180  AIRPSGIFG  188
             +R S ++G
Sbjct  144  -LRTSWVYG  151


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 69.6 bits (171),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 98/265 (37%), Gaps = 63/265 (24%)

Query  15   VTGGSGGLASKILE--LFSQRGCKRLH---------SIDIRQPSHLLHGVTYHL------  57
            +TG +G L   +LE  L S    K+++         S   R    L     +        
Sbjct  1    LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  58   -------GDLT------DVDAMRQIFHEVKPDVVIHTASP-RFDTPNHIMYKVNVEGTKN  103
                   GDL+        +  +++  EV  DV+IH+A+   F  P      VNV GT+ 
Sbjct  61   ERIVPVAGDLSEPNLGLSEEDFQELAEEV--DVIIHSAATVNFVEPYDDARAVNVLGTRE  118

Query  104  LVQIAQE-SGAHSFVYTSSASVISDGKTDLENADESYP-----VILGDQQPEY-------  150
            ++++A++      F + S+A    +G+      ++ YP     ++L + +P         
Sbjct  119  VLRLAKQGKQLKPFHHVSTA--YVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNG  176

Query  151  YTHTKALAETYVLLQNHRSEGTSPQFLTCAIRPS--------GIFGVGDLVLLPGMLDAY  202
            YT TK LAE   L++     G          RPS        G     D     G+L   
Sbjct  177  YTQTKWLAE--QLVREAARRG----LPVVIYRPSIITGEPKTGWINNFDFGPR-GLLGGI  229

Query  203  FRGQTKVQIGNNKNLFDFTENTNVA  227
             +G     +G+   + D      VA
Sbjct  230  GKGVLPSILGDPDAVLDLVPVDYVA  254


>CDD:426938 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein. 
 This is a family of diverse bacterial polysaccharide biosynthesis 
proteins including the CapD protein, WalL protein, 
mannosyl-transferase, and several putative epimerases (e.g. 
WbiI).
Length=284

 Score = 64.5 bits (158),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 69/205 (34%), Gaps = 65/205 (32%)

Query  13   VLVTGGSGGLASKILELFSQRGCKR----------LHSIDI----RQPSHLLHG-VTYHL  57
            VLVTGG G + S++     +   K+          L+ I      +     L   +   +
Sbjct  1    VLVTGGGGSIGSELCRQILKFNPKKIILFSRDELKLYEIRQELREKFNDPKLRFFIVPVI  60

Query  58   GDLTDVDAMRQIFHEVKPDVVIHTASPRFDTPNHIMYK--------------VNVEGTKN  103
            GD+ D + + +   +   DVV H A+          YK               NV GT+N
Sbjct  61   GDVRDRERLERAMEQYGVDVVFHAAA----------YKHVPLVEYNPMEAIKTNVLGTEN  110

Query  104  LVQIAQESGAHSFVYTSSASVISDGKTDLENADESYPVILGDQQPEYYTHTKALAETYVL  163
            +   A E+G   FV  S         TD   A    P  +          TK LAE    
Sbjct  111  VADAAIEAGVKKFVLIS---------TD--KA--VNPTNV-------MGATKRLAEKLFQ  150

Query  164  LQNHRSEGTSPQFLTCAIRPSGIFG  188
              N  S     +F    +R    FG
Sbjct  151  AANRESGSGGTRF--SVVR----FG  169


>CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase.  
Length=327

 Score = 62.2 bits (152),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 20/130 (15%)

Query  14   LVTGGSGGLASKILELFSQRGC-----KRLHS------IDIRQPSHLLHGVTYHLGDLTD  62
            L+TG +G   S + EL  ++G       R  S      ++     HL   +  H GDLTD
Sbjct  1    LITGITGQDGSYLAELLLEKGYEVHGIVRRSSSFNTGRLEHLYDDHLNGNLVLHYGDLTD  60

Query  63   VDAMRQIFHEVKPDVVIHTASP-----RFDTPNHIMYKVNVEGTKNLVQIAQESGAHS--  115
               + ++  EV+PD + + A+       F+ P       NV GT  L++  +  G     
Sbjct  61   SSNLVRLLAEVQPDEIYNLAAQSHVDVSFEQP-EYTADTNVLGTLRLLEAIRSLGLEKKV  119

Query  116  -FVYTSSASV  124
             F   S++ V
Sbjct  120  RFYQASTSEV  129



Lambda      K        H        a         alpha
   0.320    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 447362496


Query= TCONS_00013361

Length=917


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1179992508


Query= TCONS_00018761

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  363     8e-125


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 363 bits (934),  Expect = 8e-125, Method: Composition-based stats.
 Identities = 148/325 (46%), Positives = 198/325 (61%), Gaps = 12/325 (4%)

Query  2    PLYLLTWKIAPCLAFGCTAVAKPSEITSVSAYLLGKVIQDAGLPPGVLNLVYGAGYPTGS  61
            PL L  WKIAP LA G T V KPSE+T ++A LL ++ ++AGLP GVLN+V G+G   G 
Sbjct  139  PLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGAEVGE  198

Query  62   ALVRHPRVRGVSFTGGTATGVQIRRDTVEDIGKHISLELGGKNPTLVFEDADLTAAVATA  121
            ALV HP VR VSFTG TA G  I     +++ + ++LELGGKNP +V EDADL AAV  A
Sbjct  199  ALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKR-VTLELGGKNPLIVLEDADLDAAVEAA  257

Query  122  ARAAFENQGEICLCGSRIYVQNSIYDAFLSRFVAYVKEHYVLGQ------TVGAVVSLAH  175
               AF N G++C   SR+ V  SIYD F+ + V   K+   +G        +G ++S A 
Sbjct  258  VFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKK-LKVGDPLDPDTDMGPLISKAQ  316

Query  176  YRKIRSYLSLATQYADSFKLGSVPPETPDGGYWIEPTILT-VPDDSPIMKDEIFGPVVTV  234
              ++  Y+  A +       G       D GY++EPT+L  V  D  I ++EIFGPV++V
Sbjct  317  LERVLKYVEDAKEEGAKLLTGGEAG--LDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSV  374

Query  235  SSFESEDEAIARANDSQYGLASILLTRDGARMRRVGERLDAGLVWVNCWLV-RELGTPFG  293
              F+ E+EAI  AND++YGLA+ + T D  R  RV  RL+AG+VW+N +      G PFG
Sbjct  375  IRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFG  434

Query  294  GMKASGTGREGGDYSRDVFTNVRTV  318
            G K SG GREGG Y  + +T V+TV
Sbjct  435  GFKQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.320    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00018763

Length=101
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  137     7e-41


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 137 bits (348),  Expect = 7e-41, Method: Composition-based stats.
 Identities = 49/97 (51%), Positives = 66/97 (68%), Gaps = 1/97 (1%)

Query  1    MKDEIFGPVVTVSSFESEDEAIARANDSQYGLASILLTRDGARMRRVGERLDAGLVWVNC  60
             ++EIFGPV++V  F+ E+EAI  AND++YGLA+ + T D  R  RV  RL+AG+VW+N 
Sbjct  363  AQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWIND  422

Query  61   WLV-RELGTPFGGMKASGTGREGGDYSRDVFTNVRTV  96
            +      G PFGG K SG GREGG Y  + +T V+TV
Sbjct  423  YTTGDADGLPFGGFKQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.319    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00018762

Length=182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399210 pfam06052, 3-HAO, 3-hydroxyanthranilic acid dioxygenas...  191     1e-63


>CDD:399210 pfam06052, 3-HAO, 3-hydroxyanthranilic acid dioxygenase.  In 
eukaryotes 3-hydroxyanthranilic acid dioxygenase (EC:1.13.11.6) 
is part of the kynurenine pathway for the degradation of 
tryptophan and the biosynthesis of nicotinic acid.The prokaryotic 
homolog is involved in the 2-nitrobenzoate degradation 
pathway.
Length=151

 Score = 191 bits (487),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 73/153 (48%), Positives = 100/153 (65%), Gaps = 5/153 (3%)

Query  9    MATLNPLSWVTWLAENEDKLRPPVNNYCLYQGNDFILMAVGGPNERNDYHVNETEEWFYQ  68
            M  + P++   W+ EN   L+PPV N CL+Q   F +M VGGPNER DYH+ E  EWFYQ
Sbjct  1    MFNVTPINIDAWVKENRGLLKPPVCNKCLHQDG-FKVMIVGGPNERTDYHIEEGPEWFYQ  59

Query  69   VQGDMLLRVIENDTFRDIPIKEGEMFLLPGNTPHNPVRYKDTIGLVMERQRPAESRDRLR  128
            ++GDM+L+V++    RDI I++GE+FLLP   PH+P R+ +T+GLV+ER+R     D LR
Sbjct  60   LKGDMVLKVVDEGDARDIVIRQGEIFLLPARVPHSPQRFANTVGLVVERERLGTENDGLR  119

Query  129  WYCTKGNHCSPTIIREEVFHCADLGSQLKPIIE  161
            WYC   N     ++ E  F+  DLG+QL P I 
Sbjct  120  WYCGHCNQ----VLFESWFYLLDLGTQLPPAIL  148



Lambda      K        H        a         alpha
   0.320    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00013362

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428190 pfam04909, Amidohydro_2, Amidohydrolase. These protein...  104     6e-26


>CDD:428190 pfam04909, Amidohydro_2, Amidohydrolase.  These proteins are 
amidohydrolases that are related to pfam01979.
Length=283

 Score = 104 bits (260),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 78/304 (26%), Positives = 111/304 (37%), Gaps = 32/304 (11%)

Query  77   FFRTVAKNCYDTATRLAEMDAAGTDVQVLS----TIPILFFYDQPSAPATLLARHLNDHI  132
             +    +  +D   RL  M   G D +  S               +       R  N+ +
Sbjct  7    LWPDDERIGFDPGGRLPFMKRRGYDPRDASPEDLLALGAALGVARAVVVAASCRGANNRV  66

Query  133  ASVCRQHPTRFLGLATVPLQDVPAAVAELHRAKQELGLHGVEIGTTIDGM-TLDDPTLHP  191
            A+     P RFLG   V   D   A AEL RA  E G  GV +     G   L D    P
Sbjct  67   AAEALARPGRFLGGVAVVPLDPEDAAAELERAVGEAGFRGVRLNPHPGGDPLLGDRLDRP  126

Query  192  FWAACEELNMPVFVHPLGYTWPKENPRRWAKYWSSWLIGMPCETALALHLLICSGTLLKF  251
             + A EEL +PV +H                       G   E   A+  L+ +G   KF
Sbjct  127  IYEALEELGLPVDIHTGF--------------------GDRPEDTRAIQPLLLAGVARKF  166

Query  252  PRLKLCFAHAGGSFPALLGRIQHGYDCRPDLVAGDAGGVTPTEHATVRENIWIDSLTHDV  311
            P LK+   H GG        I  G D    L           + + +  +++ D+   D 
Sbjct  167  PDLKIVLDHGGG------PWIPEGLDDPAALALLARRPNVYVKLSGLYRDLYFDAPLADR  220

Query  312  ELLEYLVKKVGAHKMIMGSDYPFPLGEVPEAGRMIAKDGRLEGFLSWRQRAEILAGNALR  371
              L  L++  G  +++ GSD+P P  E+      +  D  L   LS  +R +IL GNA R
Sbjct  221  PYLARLLEAFGPDRILFGSDWPHPPLEIS-PDDGVLLDLPLLLALSDEEREKILGGNAAR  279

Query  372  FLNL  375
               L
Sbjct  280  LYGL  283



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00018765

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  309     1e-102


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 309 bits (794),  Expect = 1e-102, Method: Composition-based stats.
 Identities = 114/248 (46%), Positives = 158/248 (64%), Gaps = 2/248 (1%)

Query  36   TPSTSNEWLDSFNPKTGQIFARIPNSSAQDVEDAVQAAESAFASWSQTPPSTRAAHLNRI  95
              S S   ++  NP TG++ A +P ++A+DV+ A+ AA +AF +W +TP + RAA L + 
Sbjct  2    VDSESET-IEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRKA  60

Query  96   AALIEERRELFAVWESIDQGKTLARSRVEIDRAISNFRYFATYIQQQRTAARWTDDNVLT  155
            A L+EER++  A  E+++ GK LA +R E+DRAI   RY+A   ++       +D   L 
Sbjct  61   ADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSDPGRLA  120

Query  156  YEHRSPIGVFALIAPWNMPLYLLTWKIAPCLAFGCTAVAKPSEITSVSAYLLGKVIQDAG  215
            Y  R P+GV   I PWN PL L  WKIAP LA G T V KPSE+T ++A LL ++ ++AG
Sbjct  121  YTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAG  180

Query  216  LPPGVLNLVYGAGYPTGSALVRHPRVRGVSFTGGTATGVQIRRDTVEDIGKHISLELGGK  275
            LP GVLN+V G+G   G ALV HP VR VSFTG TA G  I     +++ + ++LELGGK
Sbjct  181  LPAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKR-VTLELGGK  239

Query  276  NPTLVFED  283
            NP +V ED
Sbjct  240  NPLIVLED  247



Lambda      K        H        a         alpha
   0.319    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00018764

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  515     0.0  


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 515 bits (1329),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/463 (44%), Positives = 280/463 (60%), Gaps = 13/463 (3%)

Query  36   TPSTSNEWLDSFNPKTGQIFARIPNSSAQDVEDAVQAAESAFASWSQTPPSTRAAHLNRI  95
              S S   ++  NP TG++ A +P ++A+DV+ A+ AA +AF +W +TP + RAA L + 
Sbjct  2    VDSESET-IEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRKA  60

Query  96   AALIEERRELFAVWESIDQGKTLARSRVEIDRAISNFRYFATYIQQQRTAARWTDDNVLT  155
            A L+EER++  A  E+++ GK LA +R E+DRAI   RY+A   ++       +D   L 
Sbjct  61   ADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSDPGRLA  120

Query  156  YEHRSPIGVFALIAPWNMPLYLLTWKIAPCLAFGCTAVAKPSEITSVSAYLLGKVIQDAG  215
            Y  R P+GV   I PWN PL L  WKIAP LA G T V KPSE+T ++A LL ++ ++AG
Sbjct  121  YTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAG  180

Query  216  LPPGVLNLVYGAGYPTGSALVRHPRVRGVSFTGGTATGVQIRRDTVEDIGKHISLELGGK  275
            LP GVLN+V G+G   G ALV HP VR VSFTG TA G  I     +++ + ++LELGGK
Sbjct  181  LPAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKR-VTLELGGK  239

Query  276  NPTLVFEDADLTAAVATAARAAFENQGEICLCGSRIYVQNSIYDAFLSRFVAYVKEHYVL  335
            NP +V EDADL AAV  A   AF N G++C   SR+ V  SIYD F+ + V   K+   +
Sbjct  240  NPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKK-LKV  298

Query  336  GQ------TVGAVVSLAHYRKIRSYLSLATQYADSFKLGSVPPETPDGGYWIEPTILT-V  388
            G        +G ++S A   ++  Y+  A +       G       D GY++EPT+L  V
Sbjct  299  GDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAG--LDNGYFVEPTVLANV  356

Query  389  PDDSPIMKDEIFGPVVTVSSFESEDEAIARANDSQYGLASILLTRDGARMRRVGERLDAG  448
              D  I ++EIFGPV++V  F+ E+EAI  AND++YGLA+ + T D  R  RV  RL+AG
Sbjct  357  TPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAG  416

Query  449  LVWVNCWLV-RELGTPFGGMKASGTGREGGDYSRDVFTNVRTV  490
            +VW+N +      G PFGG K SG GREGG Y  + +T V+TV
Sbjct  417  MVWINDYTTGDADGLPFGGFKQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.319    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00013364

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  312     3e-105


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 312 bits (802),  Expect = 3e-105, Method: Composition-based stats.
 Identities = 128/293 (44%), Positives = 176/293 (60%), Gaps = 12/293 (4%)

Query  6    VLGKVIQDAGLPPGVLNLVYGAGYPTGSALVRHPRVRGVSFTGGTATGVQIRRDTVEDIG  65
            +L ++ ++AGLP GVLN+V G+G   G ALV HP VR VSFTG TA G  I     +++ 
Sbjct  171  LLAELFEEAGLPAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLK  230

Query  66   KHISLELGGKNPTLVFEDADLTAAVATAARAAFENQGEICLCGSRIYVQNSIYDAFLSRF  125
            + ++LELGGKNP +V EDADL AAV  A   AF N G++C   SR+ V  SIYD F+ + 
Sbjct  231  R-VTLELGGKNPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKL  289

Query  126  VAYVKEHYVLGQ------TVGAVVSLAHYRKIRSYLSLATQYADSFKLGSVPPETPDGGY  179
            V   K+   +G        +G ++S A   ++  Y+  A +       G       D GY
Sbjct  290  VEAAKK-LKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAG--LDNGY  346

Query  180  WIEPTILT-VPDDSPIMKDEIFGPVVTVSSFESEDEAIARANDSQYGLASILLTRDGARM  238
            ++EPT+L  V  D  I ++EIFGPV++V  F+ E+EAI  AND++YGLA+ + T D  R 
Sbjct  347  FVEPTVLANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERA  406

Query  239  RRVGERLDAGLVWVNCWLV-RELGTPFGGMKASGTGREGGDYSRDVFTNVRTV  290
             RV  RL+AG+VW+N +      G PFGG K SG GREGG Y  + +T V+TV
Sbjct  407  LRVARRLEAGMVWINDYTTGDADGLPFGGFKQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.319    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00013365

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399210 pfam06052, 3-HAO, 3-hydroxyanthranilic acid dioxygenas...  183     4e-60


>CDD:399210 pfam06052, 3-HAO, 3-hydroxyanthranilic acid dioxygenase.  In 
eukaryotes 3-hydroxyanthranilic acid dioxygenase (EC:1.13.11.6) 
is part of the kynurenine pathway for the degradation of 
tryptophan and the biosynthesis of nicotinic acid.The prokaryotic 
homolog is involved in the 2-nitrobenzoate degradation 
pathway.
Length=151

 Score = 183 bits (465),  Expect = 4e-60, Method: Composition-based stats.
 Identities = 73/167 (44%), Positives = 100/167 (60%), Gaps = 19/167 (11%)

Query  9    MATLNPLSWVTWLAENEDKLRPPVNNYCLYQGNDFILMAVGGPNERNDYHVNETEEWFYQ  68
            M  + P++   W+ EN   L+PPV N CL+Q   F +M VGGPNER DYH+ E  EWFYQ
Sbjct  1    MFNVTPINIDAWVKENRGLLKPPVCNKCLHQDG-FKVMIVGGPNERTDYHIEEGPEWFYQ  59

Query  69   VQGDMLLRVIENDTFRDIPIKEGEMFLLPGTYSEFQSIKLTLLGNTPHNPVRYKDTIGLV  128
            ++GDM+L+V++    RDI I++GE+FLLP                 PH+P R+ +T+GLV
Sbjct  60   LKGDMVLKVVDEGDARDIVIRQGEIFLLP--------------ARVPHSPQRFANTVGLV  105

Query  129  MERQRPAESRDRLRWYCTKGNHCSPTIIREEVFHCADLGSQLKPIIE  175
            +ER+R     D LRWYC   N     ++ E  F+  DLG+QL P I 
Sbjct  106  VERERLGTENDGLRWYCGHCNQ----VLFESWFYLLDLGTQLPPAIL  148



Lambda      K        H        a         alpha
   0.320    0.138    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00013368

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  515     0.0  


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 515 bits (1329),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/463 (44%), Positives = 280/463 (60%), Gaps = 13/463 (3%)

Query  36   TPSTSNEWLDSFNPKTGQIFARIPNSSAQDVEDAVQAAESAFASWSQTPPSTRAAHLNRI  95
              S S   ++  NP TG++ A +P ++A+DV+ A+ AA +AF +W +TP + RAA L + 
Sbjct  2    VDSESET-IEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRKA  60

Query  96   AALIEERRELFAVWESIDQGKTLARSRVEIDRAISNFRYFATYIQQQRTAARWTDDNVLT  155
            A L+EER++  A  E+++ GK LA +R E+DRAI   RY+A   ++       +D   L 
Sbjct  61   ADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSDPGRLA  120

Query  156  YEHRSPIGVFALIAPWNMPLYLLTWKIAPCLAFGCTAVAKPSEITSVSAYLLGKVIQDAG  215
            Y  R P+GV   I PWN PL L  WKIAP LA G T V KPSE+T ++A LL ++ ++AG
Sbjct  121  YTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAG  180

Query  216  LPPGVLNLVYGAGYPTGSALVRHPRVRGVSFTGGTATGVQIRRDTVEDIGKHISLELGGK  275
            LP GVLN+V G+G   G ALV HP VR VSFTG TA G  I     +++ + ++LELGGK
Sbjct  181  LPAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKR-VTLELGGK  239

Query  276  NPTLVFEDADLTAAVATAARAAFENQGEICLCGSRIYVQNSIYDAFLSRFVAYVKEHYVL  335
            NP +V EDADL AAV  A   AF N G++C   SR+ V  SIYD F+ + V   K+   +
Sbjct  240  NPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKK-LKV  298

Query  336  GQ------TVGAVVSLAHYRKIRSYLSLATQYADSFKLGSVPPETPDGGYWIEPTILT-V  388
            G        +G ++S A   ++  Y+  A +       G       D GY++EPT+L  V
Sbjct  299  GDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAG--LDNGYFVEPTVLANV  356

Query  389  PDDSPIMKDEIFGPVVTVSSFESEDEAIARANDSQYGLASILLTRDGARMRRVGERLDAG  448
              D  I ++EIFGPV++V  F+ E+EAI  AND++YGLA+ + T D  R  RV  RL+AG
Sbjct  357  TPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAG  416

Query  449  LVWVNCWLV-RELGTPFGGMKASGTGREGGDYSRDVFTNVRTV  490
            +VW+N +      G PFGG K SG GREGG Y  + +T V+TV
Sbjct  417  MVWINDYTTGDADGLPFGGFKQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.319    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00013367

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399210 pfam06052, 3-HAO, 3-hydroxyanthranilic acid dioxygenas...  172     1e-55


>CDD:399210 pfam06052, 3-HAO, 3-hydroxyanthranilic acid dioxygenase.  In 
eukaryotes 3-hydroxyanthranilic acid dioxygenase (EC:1.13.11.6) 
is part of the kynurenine pathway for the degradation of 
tryptophan and the biosynthesis of nicotinic acid.The prokaryotic 
homolog is involved in the 2-nitrobenzoate degradation 
pathway.
Length=151

 Score = 172 bits (437),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 73/181 (40%), Positives = 100/181 (55%), Gaps = 33/181 (18%)

Query  9    MATLNPLSWVTWLAENEDKLRPPVNNYCLYQGNDFILMAVGGPNERNDYHVNETEVRLQW  68
            M  + P++   W+ EN   L+PPV N CL+Q   F +M VGGPNER DYH+ E       
Sbjct  1    MFNVTPINIDAWVKENRGLLKPPVCNKCLHQDG-FKVMIVGGPNERTDYHIEEGP-----  54

Query  69   HQPSETNEQEWFYQVQGDMLLRVIENDTFRDIPIKEGEMFLLPGTYSEFQSIKLTLLGNT  128
                     EWFYQ++GDM+L+V++    RDI I++GE+FLLP                 
Sbjct  55   ---------EWFYQLKGDMVLKVVDEGDARDIVIRQGEIFLLP--------------ARV  91

Query  129  PHNPVRYKDTIGLVMERQRPAESRDRLRWYCTKGNHCSPTIIREEVFHCADLGSQLKPII  188
            PH+P R+ +T+GLV+ER+R     D LRWYC   N     ++ E  F+  DLG+QL P I
Sbjct  92   PHSPQRFANTVGLVVERERLGTENDGLRWYCGHCNQ----VLFESWFYLLDLGTQLPPAI  147

Query  189  E  189
             
Sbjct  148  L  148



Lambda      K        H        a         alpha
   0.319    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00013370

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  363     8e-125


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 363 bits (934),  Expect = 8e-125, Method: Composition-based stats.
 Identities = 148/325 (46%), Positives = 198/325 (61%), Gaps = 12/325 (4%)

Query  2    PLYLLTWKIAPCLAFGCTAVAKPSEITSVSAYLLGKVIQDAGLPPGVLNLVYGAGYPTGS  61
            PL L  WKIAP LA G T V KPSE+T ++A LL ++ ++AGLP GVLN+V G+G   G 
Sbjct  139  PLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGAEVGE  198

Query  62   ALVRHPRVRGVSFTGGTATGVQIRRDTVEDIGKHISLELGGKNPTLVFEDADLTAAVATA  121
            ALV HP VR VSFTG TA G  I     +++ + ++LELGGKNP +V EDADL AAV  A
Sbjct  199  ALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKR-VTLELGGKNPLIVLEDADLDAAVEAA  257

Query  122  ARAAFENQGEICLCGSRIYVQNSIYDAFLSRFVAYVKEHYVLGQ------TVGAVVSLAH  175
               AF N G++C   SR+ V  SIYD F+ + V   K+   +G        +G ++S A 
Sbjct  258  VFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKK-LKVGDPLDPDTDMGPLISKAQ  316

Query  176  YRKIRSYLSLATQYADSFKLGSVPPETPDGGYWIEPTILT-VPDDSPIMKDEIFGPVVTV  234
              ++  Y+  A +       G       D GY++EPT+L  V  D  I ++EIFGPV++V
Sbjct  317  LERVLKYVEDAKEEGAKLLTGGEAG--LDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSV  374

Query  235  SSFESEDEAIARANDSQYGLASILLTRDGARMRRVGERLDAGLVWVNCWLV-RELGTPFG  293
              F+ E+EAI  AND++YGLA+ + T D  R  RV  RL+AG+VW+N +      G PFG
Sbjct  375  IRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFG  434

Query  294  GMKASGTGREGGDYSRDVFTNVRTV  318
            G K SG GREGG Y  + +T V+TV
Sbjct  435  GFKQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.320    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00013369

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  363     8e-125


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 363 bits (934),  Expect = 8e-125, Method: Composition-based stats.
 Identities = 148/325 (46%), Positives = 198/325 (61%), Gaps = 12/325 (4%)

Query  2    PLYLLTWKIAPCLAFGCTAVAKPSEITSVSAYLLGKVIQDAGLPPGVLNLVYGAGYPTGS  61
            PL L  WKIAP LA G T V KPSE+T ++A LL ++ ++AGLP GVLN+V G+G   G 
Sbjct  139  PLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGAEVGE  198

Query  62   ALVRHPRVRGVSFTGGTATGVQIRRDTVEDIGKHISLELGGKNPTLVFEDADLTAAVATA  121
            ALV HP VR VSFTG TA G  I     +++ + ++LELGGKNP +V EDADL AAV  A
Sbjct  199  ALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKR-VTLELGGKNPLIVLEDADLDAAVEAA  257

Query  122  ARAAFENQGEICLCGSRIYVQNSIYDAFLSRFVAYVKEHYVLGQ------TVGAVVSLAH  175
               AF N G++C   SR+ V  SIYD F+ + V   K+   +G        +G ++S A 
Sbjct  258  VFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKK-LKVGDPLDPDTDMGPLISKAQ  316

Query  176  YRKIRSYLSLATQYADSFKLGSVPPETPDGGYWIEPTILT-VPDDSPIMKDEIFGPVVTV  234
              ++  Y+  A +       G       D GY++EPT+L  V  D  I ++EIFGPV++V
Sbjct  317  LERVLKYVEDAKEEGAKLLTGGEAG--LDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSV  374

Query  235  SSFESEDEAIARANDSQYGLASILLTRDGARMRRVGERLDAGLVWVNCWLV-RELGTPFG  293
              F+ E+EAI  AND++YGLA+ + T D  R  RV  RL+AG+VW+N +      G PFG
Sbjct  375  IRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFG  434

Query  294  GMKASGTGREGGDYSRDVFTNVRTV  318
            G K SG GREGG Y  + +T V+TV
Sbjct  435  GFKQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.320    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00018767

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  309     1e-102


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 309 bits (794),  Expect = 1e-102, Method: Composition-based stats.
 Identities = 114/248 (46%), Positives = 158/248 (64%), Gaps = 2/248 (1%)

Query  36   TPSTSNEWLDSFNPKTGQIFARIPNSSAQDVEDAVQAAESAFASWSQTPPSTRAAHLNRI  95
              S S   ++  NP TG++ A +P ++A+DV+ A+ AA +AF +W +TP + RAA L + 
Sbjct  2    VDSESET-IEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRKA  60

Query  96   AALIEERRELFAVWESIDQGKTLARSRVEIDRAISNFRYFATYIQQQRTAARWTDDNVLT  155
            A L+EER++  A  E+++ GK LA +R E+DRAI   RY+A   ++       +D   L 
Sbjct  61   ADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSDPGRLA  120

Query  156  YEHRSPIGVFALIAPWNMPLYLLTWKIAPCLAFGCTAVAKPSEITSVSAYLLGKVIQDAG  215
            Y  R P+GV   I PWN PL L  WKIAP LA G T V KPSE+T ++A LL ++ ++AG
Sbjct  121  YTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAG  180

Query  216  LPPGVLNLVYGAGYPTGSALVRHPRVRGVSFTGGTATGVQIRRDTVEDIGKHISLELGGK  275
            LP GVLN+V G+G   G ALV HP VR VSFTG TA G  I     +++ + ++LELGGK
Sbjct  181  LPAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKR-VTLELGGK  239

Query  276  NPTLVFED  283
            NP +V ED
Sbjct  240  NPLIVLED  247



Lambda      K        H        a         alpha
   0.319    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00018766

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  515     0.0  


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 515 bits (1329),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/463 (44%), Positives = 280/463 (60%), Gaps = 13/463 (3%)

Query  36   TPSTSNEWLDSFNPKTGQIFARIPNSSAQDVEDAVQAAESAFASWSQTPPSTRAAHLNRI  95
              S S   ++  NP TG++ A +P ++A+DV+ A+ AA +AF +W +TP + RAA L + 
Sbjct  2    VDSESET-IEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRKA  60

Query  96   AALIEERRELFAVWESIDQGKTLARSRVEIDRAISNFRYFATYIQQQRTAARWTDDNVLT  155
            A L+EER++  A  E+++ GK LA +R E+DRAI   RY+A   ++       +D   L 
Sbjct  61   ADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSDPGRLA  120

Query  156  YEHRSPIGVFALIAPWNMPLYLLTWKIAPCLAFGCTAVAKPSEITSVSAYLLGKVIQDAG  215
            Y  R P+GV   I PWN PL L  WKIAP LA G T V KPSE+T ++A LL ++ ++AG
Sbjct  121  YTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAG  180

Query  216  LPPGVLNLVYGAGYPTGSALVRHPRVRGVSFTGGTATGVQIRRDTVEDIGKHISLELGGK  275
            LP GVLN+V G+G   G ALV HP VR VSFTG TA G  I     +++ + ++LELGGK
Sbjct  181  LPAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKR-VTLELGGK  239

Query  276  NPTLVFEDADLTAAVATAARAAFENQGEICLCGSRIYVQNSIYDAFLSRFVAYVKEHYVL  335
            NP +V EDADL AAV  A   AF N G++C   SR+ V  SIYD F+ + V   K+   +
Sbjct  240  NPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKK-LKV  298

Query  336  GQ------TVGAVVSLAHYRKIRSYLSLATQYADSFKLGSVPPETPDGGYWIEPTILT-V  388
            G        +G ++S A   ++  Y+  A +       G       D GY++EPT+L  V
Sbjct  299  GDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAG--LDNGYFVEPTVLANV  356

Query  389  PDDSPIMKDEIFGPVVTVSSFESEDEAIARANDSQYGLASILLTRDGARMRRVGERLDAG  448
              D  I ++EIFGPV++V  F+ E+EAI  AND++YGLA+ + T D  R  RV  RL+AG
Sbjct  357  TPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAG  416

Query  449  LVWVNCWLV-RELGTPFGGMKASGTGREGGDYSRDVFTNVRTV  490
            +VW+N +      G PFGG K SG GREGG Y  + +T V+TV
Sbjct  417  MVWINDYTTGDADGLPFGGFKQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.319    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00013371

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  312     3e-105


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 312 bits (802),  Expect = 3e-105, Method: Composition-based stats.
 Identities = 128/293 (44%), Positives = 176/293 (60%), Gaps = 12/293 (4%)

Query  6    VLGKVIQDAGLPPGVLNLVYGAGYPTGSALVRHPRVRGVSFTGGTATGVQIRRDTVEDIG  65
            +L ++ ++AGLP GVLN+V G+G   G ALV HP VR VSFTG TA G  I     +++ 
Sbjct  171  LLAELFEEAGLPAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLK  230

Query  66   KHISLELGGKNPTLVFEDADLTAAVATAARAAFENQGEICLCGSRIYVQNSIYDAFLSRF  125
            + ++LELGGKNP +V EDADL AAV  A   AF N G++C   SR+ V  SIYD F+ + 
Sbjct  231  R-VTLELGGKNPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKL  289

Query  126  VAYVKEHYVLGQ------TVGAVVSLAHYRKIRSYLSLATQYADSFKLGSVPPETPDGGY  179
            V   K+   +G        +G ++S A   ++  Y+  A +       G       D GY
Sbjct  290  VEAAKK-LKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAG--LDNGY  346

Query  180  WIEPTILT-VPDDSPIMKDEIFGPVVTVSSFESEDEAIARANDSQYGLASILLTRDGARM  238
            ++EPT+L  V  D  I ++EIFGPV++V  F+ E+EAI  AND++YGLA+ + T D  R 
Sbjct  347  FVEPTVLANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERA  406

Query  239  RRVGERLDAGLVWVNCWLV-RELGTPFGGMKASGTGREGGDYSRDVFTNVRTV  290
             RV  RL+AG+VW+N +      G PFGG K SG GREGG Y  + +T V+TV
Sbjct  407  LRVARRLEAGMVWINDYTTGDADGLPFGGFKQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.319    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0707    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00018768

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399210 pfam06052, 3-HAO, 3-hydroxyanthranilic acid dioxygenas...  172     1e-55


>CDD:399210 pfam06052, 3-HAO, 3-hydroxyanthranilic acid dioxygenase.  In 
eukaryotes 3-hydroxyanthranilic acid dioxygenase (EC:1.13.11.6) 
is part of the kynurenine pathway for the degradation of 
tryptophan and the biosynthesis of nicotinic acid.The prokaryotic 
homolog is involved in the 2-nitrobenzoate degradation 
pathway.
Length=151

 Score = 172 bits (437),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 73/181 (40%), Positives = 100/181 (55%), Gaps = 33/181 (18%)

Query  9    MATLNPLSWVTWLAENEDKLRPPVNNYCLYQGNDFILMAVGGPNERNDYHVNETEVRLQW  68
            M  + P++   W+ EN   L+PPV N CL+Q   F +M VGGPNER DYH+ E       
Sbjct  1    MFNVTPINIDAWVKENRGLLKPPVCNKCLHQDG-FKVMIVGGPNERTDYHIEEGP-----  54

Query  69   HQPSETNEQEWFYQVQGDMLLRVIENDTFRDIPIKEGEMFLLPGTYSEFQSIKLTLLGNT  128
                     EWFYQ++GDM+L+V++    RDI I++GE+FLLP                 
Sbjct  55   ---------EWFYQLKGDMVLKVVDEGDARDIVIRQGEIFLLP--------------ARV  91

Query  129  PHNPVRYKDTIGLVMERQRPAESRDRLRWYCTKGNHCSPTIIREEVFHCADLGSQLKPII  188
            PH+P R+ +T+GLV+ER+R     D LRWYC   N     ++ E  F+  DLG+QL P I
Sbjct  92   PHSPQRFANTVGLVVERERLGTENDGLRWYCGHCNQ----VLFESWFYLLDLGTQLPPAI  147

Query  189  E  189
             
Sbjct  148  L  148



Lambda      K        H        a         alpha
   0.319    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00018769

Length=206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  158     8e-47


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 158 bits (401),  Expect = 8e-47, Method: Composition-based stats.
 Identities = 60/110 (55%), Positives = 76/110 (69%), Gaps = 1/110 (1%)

Query  2    PLYLLTWKIAPCLAFGCTAVAKPSEITSVSAYLLGKVIQDAGLPPGVLNLVYGAGYPTGS  61
            PL L  WKIAP LA G T V KPSE+T ++A LL ++ ++AGLP GVLN+V G+G   G 
Sbjct  139  PLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGAEVGE  198

Query  62   ALVRHPRVRGVSFTGGTATGVQIRRDTVEDIGKHISLELGGKNPTLVFED  111
            ALV HP VR VSFTG TA G  I     +++ + ++LELGGKNP +V ED
Sbjct  199  ALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKR-VTLELGGKNPLIVLED  247



Lambda      K        H        a         alpha
   0.321    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00018770

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  128     5e-34


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 128 bits (324),  Expect = 5e-34, Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 165/401 (41%), Gaps = 27/401 (7%)

Query  7    RPSSGGQCGMFMIAESVSLGVLSLPATLASLGLVPAIILIVGLGILALYTGYTIGQFRQC  66
               S  Q    +I   +  GVLSLP     LG +P +IL++ +G+++LYT + + +  + 
Sbjct  1    GTISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKE  60

Query  67   YPHIH----NLADAGEILMGRFGRELFGLGQILFSIFIMGSHIVTFTVMMNTI-----TD  117
             P       +  D G  L+G  GR L     +L    +  S+++     +  I       
Sbjct  61   VPVTGKRNKSYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDT  120

Query  118  HGTCSIVFSIVGMLICMVLSLPRTIKNLTYISFASFLSIFSAVMITMIGVA----VQFKG  173
                 + F I+  LI + LS    +  L+ +S  + +S    ++I ++ VA    +  +G
Sbjct  121  CPISLVYFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQG  180

Query  174  GSNISVTAETNLYHAFTGVTNIVFAYCAHVAFFGLIAEMEDPKEFPKALCMLQF---FEI  230
              ++       L   F  +  IVFA+  H     +  EM++P +F     +L        
Sbjct  181  VGHLGSKTNIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIAT  240

Query  231  ALYVTAAIVIYYYVGNDVVSPALGSAGP-----LLKKVAYGIAIPTIVGAGVVNGHVGLK  285
             LY+   +V Y   G++V    L +         +  +   +    ++ +  +      +
Sbjct  241  VLYILIGLVGYLAFGDNVKGNILLNLPKSAWLIDIANLLLVLH---VILSFPLQLFPIRQ  297

Query  286  YIYVRIFRKTNRMH---KRDLVSVGSWIAIGLSCWIIAWIIAEGIPSFTNIVSLISSLFA  342
             +   +FRK        K +  S    + I     +I ++IA  +P F +++SL+ +   
Sbjct  298  IVENLLFRKEAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSC  357

Query  343  SWFSYGLPGVYWLHINWGRWFSSPRKICLTIVNLLIVCIGA  383
            +  S+ LP ++ L +   +  S  +     I++++ + IG 
Sbjct  358  APLSFILPPLFHLKLKKTKKKSQEKLWKPDILDVICIVIGL  398



Lambda      K        H        a         alpha
   0.330    0.143    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 472215968


Query= TCONS_00013375

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  142     2e-38


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 142 bits (359),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 83/401 (21%), Positives = 167/401 (42%), Gaps = 27/401 (7%)

Query  53   KTLKWWQCGMFMIAESVSLGVLSLPATLASLGLVPAIILIVGLGILALYTGYTIGQFRQC  112
             T+  WQ    +I   +  GVLSLP     LG +P +IL++ +G+++LYT + + +  + 
Sbjct  1    GTISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKE  60

Query  113  YPHIH----NLADAGEILMGRFGRELFGLGQILFSIFIMGSHIVTFTVMMNTI-----TD  163
             P       +  D G  L+G  GR L     +L    +  S+++     +  I       
Sbjct  61   VPVTGKRNKSYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDT  120

Query  164  HGTCSIVFSIVGMLICMVLSLPRTIKNLTYISFASFLSIFSAVMITMIGVA----VQFKG  219
                 + F I+  LI + LS    +  L+ +S  + +S    ++I ++ VA    +  +G
Sbjct  121  CPISLVYFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQG  180

Query  220  GSNISVTAETNLYHAFTGVTNIVFAYCAHVAFFGLIAEMEDPKEFPKALCMLQF---FEI  276
              ++       L   F  +  IVFA+  H     +  EM++P +F     +L        
Sbjct  181  VGHLGSKTNIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIAT  240

Query  277  ALYVTAAIVIYYYVGNDVVSPALGSAGP-----LLKKVAYGIAIPTIVGAGVVNGHVGLK  331
             LY+   +V Y   G++V    L +         +  +   +    ++ +  +      +
Sbjct  241  VLYILIGLVGYLAFGDNVKGNILLNLPKSAWLIDIANLLLVLH---VILSFPLQLFPIRQ  297

Query  332  YIYVRIFRK---TNRMHKRDLVSVGSWIAIGLSCWIIAWIIAEGIPSFTNIVSLISSLFA  388
             +   +FRK        K +  S    + I     +I ++IA  +P F +++SL+ +   
Sbjct  298  IVENLLFRKEAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSC  357

Query  389  SWFSYGLPGVYWLHINWGRWFSSPRKICLTIVNLLIVCIGA  429
            +  S+ LP ++ L +   +  S  +     I++++ + IG 
Sbjct  358  APLSFILPPLFHLKLKKTKKKSQEKLWKPDILDVICIVIGL  398



Lambda      K        H        a         alpha
   0.328    0.142    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00013378

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  146     6e-40


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 146 bits (370),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 84/411 (20%), Positives = 170/411 (41%), Gaps = 27/411 (7%)

Query  53   KTLKWWQCGMFMIAESVSLGVLSLPATLASLGLVPAIILIVGLGILALYTGYTIGQFRQC  112
             T+  WQ    +I   +  GVLSLP     LG +P +IL++ +G+++LYT + + +  + 
Sbjct  1    GTISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKE  60

Query  113  YPHIH----NLADAGEILMGRFGRELFGLGQILFSIFIMGSHIVTFTVMMNTI-----TD  163
             P       +  D G  L+G  GR L     +L    +  S+++     +  I       
Sbjct  61   VPVTGKRNKSYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDT  120

Query  164  HGTCSIVFSIVGMLICMVLSLPRTIKNLTYISFASFLSIFSAVMITMIGVA----VQFKG  219
                 + F I+  LI + LS    +  L+ +S  + +S    ++I ++ VA    +  +G
Sbjct  121  CPISLVYFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQG  180

Query  220  GSNISVTAETNLYHAFTGVTNIVFAYCAHVAFFGLIAEMEDPKEFPKALCMLQF---FEI  276
              ++       L   F  +  IVFA+  H     +  EM++P +F     +L        
Sbjct  181  VGHLGSKTNIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIAT  240

Query  277  ALYVTAAIVIYYYVGNDVVSPALGSAGP-----LLKKVAYGIAIPTIVGAGVVNGHVGLK  331
             LY+   +V Y   G++V    L +         +  +   + +   + +  +      +
Sbjct  241  VLYILIGLVGYLAFGDNVKGNILLNLPKSAWLIDIANLLLVLHV---ILSFPLQLFPIRQ  297

Query  332  YIYVRIFRKTNRMH---KRDLVSVGSWIAIGLSCWIIAWIIAEGIPSFTNIVSLISSLFA  388
             +   +FRK        K +  S    + I     +I ++IA  +P F +++SL+ +   
Sbjct  298  IVENLLFRKEAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSC  357

Query  389  SWFSYGLPGVYWLHINWGRWFSSPRKICLTIVNLLIVCIGATMCGLGLYVS  439
            +  S+ LP ++ L +   +  S  +     I++++ + IG  +   G+   
Sbjct  358  APLSFILPPLFHLKLKKTKKKSQEKLWKPDILDVICIVIGLLLMAYGVAGL  408



Lambda      K        H        a         alpha
   0.326    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00013372

Length=141
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  63.1    5e-13


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 63.1 bits (154),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 31/150 (21%), Positives = 60/150 (40%), Gaps = 9/150 (6%)

Query  1    MGRFGRELFGLGQILFSIFIMGSHIVTFTVMMNTI-----TDHGTCSIVFSIVGMLICMV  55
            +G  GR L     +L    +  S+++     +  I            + F I+  LI + 
Sbjct  79   LGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIFGLIFIP  138

Query  56   LSLPRTIKNLTYISFASFLSIFSAVMITMIGVA----VQFKGGSNISVTAETNLYHAFTG  111
            LS    +  L+ +S  + +S    ++I ++ VA    +  +G  ++       L   F  
Sbjct  139  LSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAGTFLA  198

Query  112  VTNIVFAYCAHVAFFGLIAEMEDPKEFPKA  141
            +  IVFA+  H     +  EM++P +F   
Sbjct  199  IGIIVFAFEGHAVLLPIQNEMKNPSKFKAM  228



Lambda      K        H        a         alpha
   0.332    0.142    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00018772

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  128     4e-34


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 128 bits (325),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 164/395 (42%), Gaps = 27/395 (7%)

Query  6    VSLGVLSLPATLASLGLVPAIILIVGLGILALYTGYTIGQFRQCYPHIH----NLADAGE  61
            +  GVLSLP     LG +P +IL++ +G+++LYT + + +  +  P       +  D G 
Sbjct  17   IGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKEVPVTGKRNKSYGDLGY  76

Query  62   ILMGRFGRELFGLGQILFSIFIMGSHIVTFTVMMNTI-----TDHGTCSIVFSIVGMLIC  116
             L+G  GR L     +L    +  S+++     +  I            + F I+  LI 
Sbjct  77   RLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIFGLIF  136

Query  117  MVLSLPRTIKNLTYISFASFLSIFSAVMITMIGVA----VQFKGGSNISVTAETNLYHAF  172
            + LS    +  L+ +S  + +S    ++I ++ VA    +  +G  ++       L   F
Sbjct  137  IPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAGTF  196

Query  173  TGVTNIVFAYCAHVAFFGLIAEMEDPKEFPKALCMLQF---FEIALYVTAAIVIYYYVGN  229
              +  IVFA+  H     +  EM++P +F     +L         LY+   +V Y   G+
Sbjct  197  LAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLAFGD  256

Query  230  DVVSPALGSAGP-----LLKKVAYGIAIPTIVGAGVVNGHVGLKYIYVRIFRKTNRMH--  282
            +V    L +         +  +   + +   + +  +      + +   +FRK       
Sbjct  257  NVKGNILLNLPKSAWLIDIANLLLVLHV---ILSFPLQLFPIRQIVENLLFRKEAPFGAS  313

Query  283  -KRDLVSVGSWIAIGLSCWIIAWIIAEGIPSFTNIVSLISSLFASWFSYGLPGVYWLHIN  341
             K +  S    + I     +I ++IA  +P F +++SL+ +   +  S+ LP ++ L + 
Sbjct  314  GKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFILPPLFHLKLK  373

Query  342  WGRWFSSPRKICLTIVNLLIVCIGATMCGLGLYVS  376
              +  S  +     I++++ + IG  +   G+   
Sbjct  374  KTKKKSQEKLWKPDILDVICIVIGLLLMAYGVAGL  408



Lambda      K        H        a         alpha
   0.329    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00018773

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  117     2e-30


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 117 bits (296),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 113/268 (42%), Gaps = 16/268 (6%)

Query  53   KTLKWWQCGMFMIAESVSLGVLSLPATLASLGLVPAIILIVGLGILALYTGYTIGQFRQC  112
             T+  WQ    +I   +  GVLSLP     LG +P +IL++ +G+++LYT + + +  + 
Sbjct  1    GTISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKE  60

Query  113  YPHIH----NLADAGEILMGRFGRELFGLGQILFSIFIMGSHIVTFTVMMNTI-----TD  163
             P       +  D G  L+G  GR L     +L    +  S+++     +  I       
Sbjct  61   VPVTGKRNKSYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDT  120

Query  164  HGTCSIVFSIVGMLICMVLSLPRTIKNLTYISFASFLSIFSAVMITMIGVA----VQFKG  219
                 + F I+  LI + LS    +  L+ +S  + +S    ++I ++ VA    +  +G
Sbjct  121  CPISLVYFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQG  180

Query  220  GSNISVTAETNLYHAFTGVTNIVFAYCAHVAFFGLIAEMEDPKEFPKALCMLQF---FEI  276
              ++       L   F  +  IVFA+  H     +  EM++P +F     +L        
Sbjct  181  VGHLGSKTNIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIAT  240

Query  277  ALYVTAAIVIYYYVGNDVVSPALGSAGP  304
             LY+   +V Y   G++V    L +   
Sbjct  241  VLYILIGLVGYLAFGDNVKGNILLNLPK  268



Lambda      K        H        a         alpha
   0.325    0.140    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00018771

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  133     1e-35


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 133 bits (337),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 168/411 (41%), Gaps = 27/411 (7%)

Query  7    RPSSGGQCGMFMIAESVSLGVLSLPATLASLGLVPAIILIVGLGILALYTGYTIGQFRQC  66
               S  Q    +I   +  GVLSLP     LG +P +IL++ +G+++LYT + + +  + 
Sbjct  1    GTISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKE  60

Query  67   YPHIH----NLADAGEILMGRFGRELFGLGQILFSIFIMGSHIVTFTVMMNTI-----TD  117
             P       +  D G  L+G  GR L     +L    +  S+++     +  I       
Sbjct  61   VPVTGKRNKSYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDT  120

Query  118  HGTCSIVFSIVGMLICMVLSLPRTIKNLTYISFASFLSIFSAVMITMIGVA----VQFKG  173
                 + F I+  LI + LS    +  L+ +S  + +S    ++I ++ VA    +  +G
Sbjct  121  CPISLVYFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQG  180

Query  174  GSNISVTAETNLYHAFTGVTNIVFAYCAHVAFFGLIAEMEDPKEFPKALCMLQF---FEI  230
              ++       L   F  +  IVFA+  H     +  EM++P +F     +L        
Sbjct  181  VGHLGSKTNIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIAT  240

Query  231  ALYVTAAIVIYYYVGNDVVSPALGSAGP-----LLKKVAYGIAIPTIVGAGVVNGHVGLK  285
             LY+   +V Y   G++V    L +         +  +   + +   + +  +      +
Sbjct  241  VLYILIGLVGYLAFGDNVKGNILLNLPKSAWLIDIANLLLVLHV---ILSFPLQLFPIRQ  297

Query  286  YIYVRIFRKTNRMH---KRDLVSVGSWIAIGLSCWIIAWIIAEGIPSFTNIVSLISSLFA  342
             +   +FRK        K +  S    + I     +I ++IA  +P F +++SL+ +   
Sbjct  298  IVENLLFRKEAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSC  357

Query  343  SWFSYGLPGVYWLHINWGRWFSSPRKICLTIVNLLIVCIGATMCGLGLYVS  393
            +  S+ LP ++ L +   +  S  +     I++++ + IG  +   G+   
Sbjct  358  APLSFILPPLFHLKLKKTKKKSQEKLWKPDILDVICIVIGLLLMAYGVAGL  408



Lambda      K        H        a         alpha
   0.328    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00018774

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  133     4e-35


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 133 bits (336),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 83/417 (20%), Positives = 167/417 (40%), Gaps = 43/417 (10%)

Query  53   KTLKWWQCGMFMIAESVSLGVLSLPATLASLGLVPAIILIVGLGILALYTGYTIGQFRQC  112
             T+  WQ    +I   +  GVLSLP     LG +P +IL++ +G+++LYT + + +  + 
Sbjct  1    GTISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKE  60

Query  113  YPHIH----NLADAGEILMGRFGRELFGLGQILFSIFIMGSHIVTFTVMMNTI-----TD  163
             P       +  D G  L+G  GR L     +L    +  S+++     +  I       
Sbjct  61   VPVTGKRNKSYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDT  120

Query  164  HGTCSIVFSIVGMLICMVLSLPRTIKNLTYISFASFLSIFSAVMITMIGVA----VQFKG  219
                 + F I+  LI + LS    +  L+ +S  + +S    ++I ++ VA    +  +G
Sbjct  121  CPISLVYFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQG  180

Query  220  GSNISVTAETNLYHAFTGVTNIVFAYCAHVAFFGLIAEMEDPKEFPKALCMLQF---FEI  276
              ++       L   F  +  IVFA+  H     +  EM++P +F     +L        
Sbjct  181  VGHLGSKTNIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIAT  240

Query  277  ALYVTAAIVIYYYVGNDVVSPALGSAGP-----LLKKVAYGIAIPTIVGAGVVNGHVGLK  331
             LY+   +V Y   G++V    L +         +  +   +    ++ +  +      +
Sbjct  241  VLYILIGLVGYLAFGDNVKGNILLNLPKSAWLIDIANLLLVLH---VILSFPLQLFPIRQ  297

Query  332  YIYVRIFRKTNRMH---KRDLVSVGSWIAIGLSCWIIAWIIAEGIPSFTNIVSLIVCHKT  388
             +   +FRK        K +  S    + I     +I ++IA  +P F +++SL+     
Sbjct  298  IVENLLFRKEAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLV-----  352

Query  389  RLLGSKTNWTQSSLFASWFSYGLPGVYWLHINWGRWFSSPRKICLTIVNLLIVCIGA  445
                        +   +  S+ LP ++ L +   +  S  +     I++++ + IG 
Sbjct  353  -----------GATSCAPLSFILPPLFHLKLKKTKKKSQEKLWKPDILDVICIVIGL  398



Lambda      K        H        a         alpha
   0.327    0.142    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00013376

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  97.0    3e-23


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 97.0 bits (242),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 60/323 (19%), Positives = 128/323 (40%), Gaps = 23/323 (7%)

Query  1    MGRFGRELFGLGQILFSIFIMGSHIVTFTVMMNTI-----TDHGTCSIVFSIVGMLICMV  55
            +G  GR L     +L    +  S+++     +  I            + F I+  LI + 
Sbjct  79   LGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIFGLIFIP  138

Query  56   LSLPRTIKNLTYISFASFLSIFSAVMITMIGVA----VQFKGGSNISVTAETNLYHAFTG  111
            LS    +  L+ +S  + +S    ++I ++ VA    +  +G  ++       L   F  
Sbjct  139  LSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAGTFLA  198

Query  112  VTNIVFAYCAHVAFFGLIAEMEDPKEFPKALCMLQF---FEIALYVTAAIVIYYYVGNDV  168
            +  IVFA+  H     +  EM++P +F     +L         LY+   +V Y   G++V
Sbjct  199  IGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLAFGDNV  258

Query  169  VSPALGSAGP-----LLKKVAYGIAIPTIVGAGVVNGHVGLKYIYVRIFRKTNRMH---K  220
                L +         +  +   +    ++ +  +      + +   +FRK        K
Sbjct  259  KGNILLNLPKSAWLIDIANLLLVLH---VILSFPLQLFPIRQIVENLLFRKEAPFGASGK  315

Query  221  RDLVSVGSWIAIGLSCWIIAWIIAEGIPSFTNIVSLISSLFASWFSYGLPGVYWLHINWG  280
             +  S    + I     +I ++IA  +P F +++SL+ +   +  S+ LP ++ L +   
Sbjct  316  NNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFILPPLFHLKLKKT  375

Query  281  RWFSSPRKICLTIVNLLIVCIGA  303
            +  S  +     I++++ + IG 
Sbjct  376  KKKSQEKLWKPDILDVICIVIGL  398



Lambda      K        H        a         alpha
   0.331    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00013374

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  123     3e-32


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 123 bits (311),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 79/385 (21%), Positives = 161/385 (42%), Gaps = 27/385 (7%)

Query  6    VSLGVLSLPATLASLGLVPAIILIVGLGILALYTGYTIGQFRQCYPHIH----NLADAGE  61
            +  GVLSLP     LG +P +IL++ +G+++LYT + + +  +  P       +  D G 
Sbjct  17   IGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKEVPVTGKRNKSYGDLGY  76

Query  62   ILMGRFGRELFGLGQILFSIFIMGSHIVTFTVMMNTI-----TDHGTCSIVFSIVGMLIC  116
             L+G  GR L     +L    +  S+++     +  I            + F I+  LI 
Sbjct  77   RLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIFGLIF  136

Query  117  MVLSLPRTIKNLTYISFASFLSIFSAVMITMIGVA----VQFKGGSNISVTAETNLYHAF  172
            + LS    +  L+ +S  + +S    ++I ++ VA    +  +G  ++       L   F
Sbjct  137  IPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAGTF  196

Query  173  TGVTNIVFAYCAHVAFFGLIAEMEDPKEFPKALCMLQF---FEIALYVTAAIVIYYYVGN  229
              +  IVFA+  H     +  EM++P +F     +L         LY+   +V Y   G+
Sbjct  197  LAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLAFGD  256

Query  230  DVVSPALGSAGP-----LLKKVAYGIAIPTIVGAGVVNGHVGLKYIYVRIFRKTNRMH--  282
            +V    L +         +  +   +    ++ +  +      + +   +FRK       
Sbjct  257  NVKGNILLNLPKSAWLIDIANLLLVLH---VILSFPLQLFPIRQIVENLLFRKEAPFGAS  313

Query  283  -KRDLVSVGSWIAIGLSCWIIAWIIAEGIPSFTNIVSLISSLFASWFSYGLPGVYWLHIN  341
             K +  S    + I     +I ++IA  +P F +++SL+ +   +  S+ LP ++ L + 
Sbjct  314  GKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFILPPLFHLKLK  373

Query  342  WGRWFSSPRKICLTIVNLLIVCIGA  366
              +  S  +     I++++ + IG 
Sbjct  374  KTKKKSQEKLWKPDILDVICIVIGL  398



Lambda      K        H        a         alpha
   0.330    0.143    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453018240


Query= TCONS_00013377

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  142     3e-38


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 142 bits (359),  Expect = 3e-38, Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 164/395 (42%), Gaps = 27/395 (7%)

Query  84   VSLGVLSLPATLASLGLVPAIILIVGLGILALYTGYTIGQFRQCYPHIH----NLADAGE  139
            +  GVLSLP     LG +P +IL++ +G+++LYT + + +  +  P       +  D G 
Sbjct  17   IGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKEVPVTGKRNKSYGDLGY  76

Query  140  ILMGRFGRELFGLGQILFSIFIMGSHIVTFTVMMNTI-----TDHGTCSIVFSIVGMLIC  194
             L+G  GR L     +L    +  S+++     +  I            + F I+  LI 
Sbjct  77   RLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIFGLIF  136

Query  195  MVLSLPRTIKNLTYISFASFLSIFSAVMITMIGVA----VQFKGGSNISVTAETNLYHAF  250
            + LS    +  L+ +S  + +S    ++I ++ VA    +  +G  ++       L   F
Sbjct  137  IPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAGTF  196

Query  251  TGVTNIVFAYCAHVAFFGLIAEMEDPKEFPKALCMLQF---FEIALYVTAAIVIYYYVGN  307
              +  IVFA+  H     +  EM++P +F     +L         LY+   +V Y   G+
Sbjct  197  LAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLAFGD  256

Query  308  DVVSPALGSAGP-----LLKKVAYGIAIPTIVGAGVVNGHVGLKYIYVRIFRKTNRMH--  360
            +V    L +         +  +   + +   + +  +      + +   +FRK       
Sbjct  257  NVKGNILLNLPKSAWLIDIANLLLVLHV---ILSFPLQLFPIRQIVENLLFRKEAPFGAS  313

Query  361  -KRDLVSVGSWIAIGLSCWIIAWIIAEGIPSFTNIVSLISSLFASWFSYGLPGVYWLHIN  419
             K +  S    + I     +I ++IA  +P F +++SL+ +   +  S+ LP ++ L + 
Sbjct  314  GKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFILPPLFHLKLK  373

Query  420  WGRWFSSPRKICLTIVNLLIVCIGATMCGLGLYVS  454
              +  S  +     I++++ + IG  +   G+   
Sbjct  374  KTKKKSQEKLWKPDILDVICIVIGLLLMAYGVAGL  408



Lambda      K        H        a         alpha
   0.326    0.141    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00018775

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  128     4e-34


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 128 bits (325),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 164/395 (42%), Gaps = 27/395 (7%)

Query  6    VSLGVLSLPATLASLGLVPAIILIVGLGILALYTGYTIGQFRQCYPHIH----NLADAGE  61
            +  GVLSLP     LG +P +IL++ +G+++LYT + + +  +  P       +  D G 
Sbjct  17   IGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKEVPVTGKRNKSYGDLGY  76

Query  62   ILMGRFGRELFGLGQILFSIFIMGSHIVTFTVMMNTI-----TDHGTCSIVFSIVGMLIC  116
             L+G  GR L     +L    +  S+++     +  I            + F I+  LI 
Sbjct  77   RLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIFGLIF  136

Query  117  MVLSLPRTIKNLTYISFASFLSIFSAVMITMIGVA----VQFKGGSNISVTAETNLYHAF  172
            + LS    +  L+ +S  + +S    ++I ++ VA    +  +G  ++       L   F
Sbjct  137  IPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAGTF  196

Query  173  TGVTNIVFAYCAHVAFFGLIAEMEDPKEFPKALCMLQF---FEIALYVTAAIVIYYYVGN  229
              +  IVFA+  H     +  EM++P +F     +L         LY+   +V Y   G+
Sbjct  197  LAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLAFGD  256

Query  230  DVVSPALGSAGP-----LLKKVAYGIAIPTIVGAGVVNGHVGLKYIYVRIFRKTNRMH--  282
            +V    L +         +  +   + +   + +  +      + +   +FRK       
Sbjct  257  NVKGNILLNLPKSAWLIDIANLLLVLHV---ILSFPLQLFPIRQIVENLLFRKEAPFGAS  313

Query  283  -KRDLVSVGSWIAIGLSCWIIAWIIAEGIPSFTNIVSLISSLFASWFSYGLPGVYWLHIN  341
             K +  S    + I     +I ++IA  +P F +++SL+ +   +  S+ LP ++ L + 
Sbjct  314  GKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFILPPLFHLKLK  373

Query  342  WGRWFSSPRKICLTIVNLLIVCIGATMCGLGLYVS  376
              +  S  +     I++++ + IG  +   G+   
Sbjct  374  KTKKKSQEKLWKPDILDVICIVIGLLLMAYGVAGL  408



Lambda      K        H        a         alpha
   0.329    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00018776

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  123     4e-32


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 123 bits (310),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 163/392 (42%), Gaps = 27/392 (7%)

Query  1    MFMIAESVSLGVLSLPATLASLGLVPAIILIVGLGILALYTGYTIGQFRQCYPHIH----  56
              +I   +  GVLSLP     LG +P +IL++ +G+++LYT + + +  +  P       
Sbjct  10   FNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKEVPVTGKRNK  69

Query  57   NLADAGEILMGRFGRELFGLGQILFSIFIMGSHIVTFTVMMNTI-----TDHGTCSIVFS  111
            +  D G  L+G  GR L     +L    +  S+++     +  I            + F 
Sbjct  70   SYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFI  129

Query  112  IVGMLICMVLSLPRTIKNLTYISFASFLSIFSAVMITMIGVA----VQFKGGSNISVTAE  167
            I+  LI + LS    +  L+ +S  + +S    ++I ++ VA    +  +G  ++     
Sbjct  130  IIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTN  189

Query  168  TNLYHAFTGVTNIVFAYCAHVAFFGLIAEMEDPKEFPKALCMLQF---FEIALYVTAAIV  224
              L   F  +  IVFA+  H     +  EM++P +F     +L         LY+   +V
Sbjct  190  IKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLV  249

Query  225  IYYYVGNDVVSPALGSAGP-----LLKKVAYGIAIPTIVGAGVVNGHVGLKYIYVRIFRK  279
             Y   G++V    L +         +  +   +    ++ +  +      + +   +FRK
Sbjct  250  GYLAFGDNVKGNILLNLPKSAWLIDIANLLLVLH---VILSFPLQLFPIRQIVENLLFRK  306

Query  280  TNRMH---KRDLVSVGSWIAIGLSCWIIAWIIAEGIPSFTNIVSLISSLFASWFSYGLPG  336
                    K +  S    + I     +I ++IA  +P F +++SL+ +   +  S+ LP 
Sbjct  307  EAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFILPP  366

Query  337  VYWLHINWGRWFSSPRKICLTIVNLLIVCIGA  368
            ++ L +   +  S  +     I++++ + IG 
Sbjct  367  LFHLKLKKTKKKSQEKLWKPDILDVICIVIGL  398



Lambda      K        H        a         alpha
   0.331    0.144    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00013379

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  125     9e-33


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 125 bits (315),  Expect = 9e-33, Method: Composition-based stats.
 Identities = 79/385 (21%), Positives = 161/385 (42%), Gaps = 27/385 (7%)

Query  14   VSLGVLSLPATLASLGLVPAIILIVGLGILALYTGYTIGQFRQCYPHIH----NLADAGE  69
            +  GVLSLP     LG +P +IL++ +G+++LYT + + +  +  P       +  D G 
Sbjct  17   IGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKEVPVTGKRNKSYGDLGY  76

Query  70   ILMGRFGRELFGLGQILFSIFIMGSHIVTFTVMMNTI-----TDHGTCSIVFSIVGMLIC  124
             L+G  GR L     +L    +  S+++     +  I            + F I+  LI 
Sbjct  77   RLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIFGLIF  136

Query  125  MVLSLPRTIKNLTYISFASFLSIFSAVMITMIGVA----VQFKGGSNISVTAETNLYHAF  180
            + LS    +  L+ +S  + +S    ++I ++ VA    +  +G  ++       L   F
Sbjct  137  IPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAGTF  196

Query  181  TGVTNIVFAYCAHVAFFGLIAEMEDPKEFPKALCMLQF---FEIALYVTAAIVIYYYVGN  237
              +  IVFA+  H     +  EM++P +F     +L         LY+   +V Y   G+
Sbjct  197  LAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLAFGD  256

Query  238  DVVSPALGSAGP-----LLKKVAYGIAIPTIVGAGVVNGHVGLKYIYVRIFRKTNRMH--  290
            +V    L +         +  +   +    ++ +  +      + +   +FRK       
Sbjct  257  NVKGNILLNLPKSAWLIDIANLLLVLH---VILSFPLQLFPIRQIVENLLFRKEAPFGAS  313

Query  291  -KRDLVSVGSWIAIGLSCWIIAWIIAEGIPSFTNIVSLISSLFASWFSYGLPGVYWLHIN  349
             K +  S    + I     +I ++IA  +P F +++SL+ +   +  S+ LP ++ L + 
Sbjct  314  GKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFILPPLFHLKLK  373

Query  350  WGRWFSSPRKICLTIVNLLIVCIGA  374
              +  S  +     I++++ + IG 
Sbjct  374  KTKKKSQEKLWKPDILDVICIVIGL  398



Lambda      K        H        a         alpha
   0.330    0.143    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00013381

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  130     2e-34


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 130 bits (328),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 165/401 (41%), Gaps = 27/401 (7%)

Query  7    RPSSGGQCGMFMIAESVSLGVLSLPATLASLGLVPSIILIVGLGILALYTGYTIGQFRQC  66
               S  Q    +I   +  GVLSLP     LG +P +IL++ +G+++LYT + + +  + 
Sbjct  1    GTISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKE  60

Query  67   YPHIH----NLADAGEILMGRFGRELFGLGQILFSIFIMGSHIVTFTVMMNTI-----TD  117
             P       +  D G  L+G  GR L     +L    +  S+++     +  I       
Sbjct  61   VPVTGKRNKSYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDT  120

Query  118  HGTCSIVFSIVGMLICMVLSLPRTIKNLTYISFASFLSIFSAVMITMIGVA----VQFKG  173
                 + F I+  LI + LS    +  L+ +S  + +S    ++I ++ VA    +  +G
Sbjct  121  CPISLVYFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQG  180

Query  174  GSNISVTAETNLYHAFTGVTNIVFAYCAHVAFFGLIAEMEDPKEFPKALCMLQF---FEI  230
              ++       L   F  +  IVFA+  H     +  EM++P +F     +L        
Sbjct  181  VGHLGSKTNIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIAT  240

Query  231  ALYVTAAIVIYYYVGNDVVSPALGSAGP-----LLKKVAYGIAIPTIVGAGVVNGHVGLK  285
             LY+   +V Y   G++V    L +         +  +   +    ++ +  +      +
Sbjct  241  VLYILIGLVGYLAFGDNVKGNILLNLPKSAWLIDIANLLLVLH---VILSFPLQLFPIRQ  297

Query  286  YIYVRIFRKTNRMH---KRDLVSVGSWIAIGLSCWIIAWIIAEGIPSFTNIVSLISSLFA  342
             +   +FRK        K +  S    + I     +I ++IA  +P F +++SL+ +   
Sbjct  298  IVENLLFRKEAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSC  357

Query  343  SWFSYGLPGVYWLHINWGRWFSSPRKICLTIVNLLIVCIGA  383
            +  S+ LP ++ L +   +  S  +     I++++ + IG 
Sbjct  358  APLSFILPPLFHLKLKKTKKKSQEKLWKPDILDVICIVIGL  398



Lambda      K        H        a         alpha
   0.330    0.143    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 472215968


Query= TCONS_00013380

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  97.0    3e-23


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 97.0 bits (242),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 60/323 (19%), Positives = 128/323 (40%), Gaps = 23/323 (7%)

Query  1    MGRFGRELFGLGQILFSIFIMGSHIVTFTVMMNTI-----TDHGTCSIVFSIVGMLICMV  55
            +G  GR L     +L    +  S+++     +  I            + F I+  LI + 
Sbjct  79   LGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIFGLIFIP  138

Query  56   LSLPRTIKNLTYISFASFLSIFSAVMITMIGVA----VQFKGGSNISVTAETNLYHAFTG  111
            LS    +  L+ +S  + +S    ++I ++ VA    +  +G  ++       L   F  
Sbjct  139  LSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAGTFLA  198

Query  112  VTNIVFAYCAHVAFFGLIAEMEDPKEFPKALCMLQF---FEIALYVTAAIVIYYYVGNDV  168
            +  IVFA+  H     +  EM++P +F     +L         LY+   +V Y   G++V
Sbjct  199  IGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLAFGDNV  258

Query  169  VSPALGSAGP-----LLKKVAYGIAIPTIVGAGVVNGHVGLKYIYVRIFRKTNRMH---K  220
                L +         +  +   +    ++ +  +      + +   +FRK        K
Sbjct  259  KGNILLNLPKSAWLIDIANLLLVLH---VILSFPLQLFPIRQIVENLLFRKEAPFGASGK  315

Query  221  RDLVSVGSWIAIGLSCWIIAWIIAEGIPSFTNIVSLISSLFASWFSYGLPGVYWLHINWG  280
             +  S    + I     +I ++IA  +P F +++SL+ +   +  S+ LP ++ L +   
Sbjct  316  NNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFILPPLFHLKLKKT  375

Query  281  RWFSSPRKICLTIVNLLIVCIGA  303
            +  S  +     I++++ + IG 
Sbjct  376  KKKSQEKLWKPDILDVICIVIGL  398



Lambda      K        H        a         alpha
   0.331    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00013382

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  130     2e-34


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 130 bits (328),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 164/395 (42%), Gaps = 27/395 (7%)

Query  14   VSLGVLSLPATLASLGLVPAIILIVGLGILALYTGYTIGQFRQCYPHIH----NLADAGE  69
            +  GVLSLP     LG +P +IL++ +G+++LYT + + +  +  P       +  D G 
Sbjct  17   IGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKEVPVTGKRNKSYGDLGY  76

Query  70   ILMGRFGRELFGLGQILFSIFIMGSHIVTFTVMMNTI-----TDHGTCSIVFSIVGMLIC  124
             L+G  GR L     +L    +  S+++     +  I            + F I+  LI 
Sbjct  77   RLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIFGLIF  136

Query  125  MVLSLPRTIKNLTYISFASFLSIFSAVMITMIGVA----VQFKGGSNISVTAETNLYHAF  180
            + LS    +  L+ +S  + +S    ++I ++ VA    +  +G  ++       L   F
Sbjct  137  IPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAGTF  196

Query  181  TGVTNIVFAYCAHVAFFGLIAEMEDPKEFPKALCMLQF---FEIALYVTAAIVIYYYVGN  237
              +  IVFA+  H     +  EM++P +F     +L         LY+   +V Y   G+
Sbjct  197  LAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLAFGD  256

Query  238  DVVSPALGSAGP-----LLKKVAYGIAIPTIVGAGVVNGHVGLKYIYVRIFRKTNRMH--  290
            +V    L +         +  +   + +   + +  +      + +   +FRK       
Sbjct  257  NVKGNILLNLPKSAWLIDIANLLLVLHV---ILSFPLQLFPIRQIVENLLFRKEAPFGAS  313

Query  291  -KRDLVSVGSWIAIGLSCWIIAWIIAEGIPSFTNIVSLISSLFASWFSYGLPGVYWLHIN  349
             K +  S    + I     +I ++IA  +P F +++SL+ +   +  S+ LP ++ L + 
Sbjct  314  GKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFILPPLFHLKLK  373

Query  350  WGRWFSSPRKICLTIVNLLIVCIGATMCGLGLYVS  384
              +  S  +     I++++ + IG  +   G+   
Sbjct  374  KTKKKSQEKLWKPDILDVICIVIGLLLMAYGVAGL  408



Lambda      K        H        a         alpha
   0.328    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00018777

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  72.3    4e-15


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 72.3 bits (178),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 43/244 (18%), Positives = 96/244 (39%), Gaps = 14/244 (6%)

Query  1    MITMIGVAVQFKGGSNISVTAETNLYHAFTGVTNIVFAYCAHVAFFGLIAEMEDPKEFPK  60
            +    G+ +  +G  ++       L   F  +  IVFA+  H     +  EM++P +F  
Sbjct  168  LSVAEGIVLTAQGVGHLGSKTNIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKA  227

Query  61   ALCMLQF---FEIALYVTAAIVIYYYVGNDVVSPALGSAGP-----LLKKVAYGIAIPTI  112
               +L         LY+   +V Y   G++V    L +         +  +   + +   
Sbjct  228  MTKILLTAIIIATVLYILIGLVGYLAFGDNVKGNILLNLPKSAWLIDIANLLLVLHV---  284

Query  113  VGAGVVNGHVGLKYIYVRIFRKTNRMH---KRDLVSVGSWIAIGLSCWIIAWIIAEGIPS  169
            + +  +      + +   +FRK        K +  S    + I     +I ++IA  +P 
Sbjct  285  ILSFPLQLFPIRQIVENLLFRKEAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAISVPF  344

Query  170  FTNIVSLISSLFASWFSYGLPGVYWLHINWGRWFSSPRKICLTIVNLLIVCIGATMCGLG  229
            F +++SL+ +   +  S+ LP ++ L +   +  S  +     I++++ + IG  +   G
Sbjct  345  FGDLLSLVGATSCAPLSFILPPLFHLKLKKTKKKSQEKLWKPDILDVICIVIGLLLMAYG  404

Query  230  LYVS  233
            +   
Sbjct  405  VAGL  408



Lambda      K        H        a         alpha
   0.327    0.140    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00013383

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00018779

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like...  79.4    2e-16
CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  64.6    4e-12


>CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This 
family includes FMO proteins, cyclohexanone mono-oxygenase 
and a number of different mono-oxygenases.
Length=531

 Score = 79.4 bits (196),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 60/231 (26%), Positives = 111/231 (48%), Gaps = 31/231 (13%)

Query  44   IIGAGISGI-----CTAIDLIKRSKCHNFIILEKSSGVGGTW--NDNRYPGSCCDVWSSL  96
            +IGAG+SG+     C    L     C      E+S  +GG W   +N   G    ++ S+
Sbjct  6    VIGAGVSGLASIKCCLEEGL--EPTC-----FERSDDIGGLWRFTENVEEGRA-SIYKSV  57

Query  97   YSYSFEQKADWT-----REYPG---QEEILDYLIGVAQKYGLYRYIRFNSAVE--EARWD  146
             + + ++ + ++      +YP      + L+Y    A+++ L +YI+F + V   + R D
Sbjct  58   ITNTSKEMSCFSDFPFPEDYPNFMHNSKFLEYFRMFAKEFDLLKYIQFKTTVCSVKKRPD  117

Query  147  EADL-KWKVGVRVSGGKDSQYLESYEITTDFLISAVGQLNVPRMPDIPGLDDYKGKLMHS  205
             +   +W+V     G ++S   ++  + T    +     ++P +   PG++ +KG+  HS
Sbjct  118  FSTSGQWEVVTEHEGKQESAVFDAVMVCTGHHTNP----HLP-LESFPGIEKFKGQYFHS  172

Query  206  ARWDWSFDWTGKRVAVIGNGATAAQIIPEIAKTAAHVSVYQRTPNWVMPRL  256
              +     +TGKRV VIG G +   I  E++ TAA V +  R  +WV+ R+
Sbjct  173  RDYKHPEGFTGKRVLVIGIGNSGGDIAVELSHTAAQVFLSTRRGSWVLSRV  223


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 64.6 bits (158),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 50/230 (22%), Positives = 78/230 (34%), Gaps = 32/230 (14%)

Query  43   VIIGAGISGICTAIDLIKRSKCHNFIILEKSSGVGGTWNDNRYPGSCCDVWSSLYSYSFE  102
            V+IG G +G+  A+ L  +      +I        GT      P   C     + S +  
Sbjct  4    VVIGGGPAGLAAALTL-AQLGGKVTLI-----EDEGTC-----PYGGC-----VLSKALL  47

Query  103  QKADWTREYPGQEEILDYLIGVAQKYGLYRYIRFNSAVEEARWDEADLKWKVGVRVSGGK  162
              A+         ++      V +K      I      E    D    K  +   V G  
Sbjct  48   GAAEAPEIASLWADLYKRKEEVVKKLN--NGIEVLLGTEVVSIDPGAKKVVLEELVDGDG  105

Query  163  DSQYLESYEITTDFLISAVGQLNVPRMPDIPGLDDYKGKL---MHSARWDWSFDWTGKRV  219
                     IT D L+ A G    PR+P IPG++   G L   + SA          KRV
Sbjct  106  -------ETITYDRLVIATGA--RPRLPPIPGVELNVGFLVRTLDSAE-ALRLKLLPKRV  155

Query  220  AVIGNGATAAQIIPEIAKTAAHVSVYQRTPNWVMPRLDRPVGAVQRALLT  269
             V+G G    ++   +AK    V++ +     ++   D  + A     L 
Sbjct  156  VVVGGGYIGVELAAALAKLGKEVTLIEALD-RLLRAFDEEISAALEKALE  204



Lambda      K        H        a         alpha
   0.321    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00013384

Length=238


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00013385

Length=387


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00013386

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase. Th...  100     6e-26


>CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase.  This family 
contains hydrolases that break carbon-nitrogen bonds. The 
family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, 
Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. 
Nitrilase-related proteins generally have a conserved 
E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha 
sandwich proteins.
Length=257

 Score = 100 bits (252),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 58/215 (27%), Positives = 86/215 (40%), Gaps = 35/215 (16%)

Query  1    MRRIRNAARTNKIYVSLGYSEVDLAS--LYTTQVLISPSGDIPNHRRKIR-------ATH  51
            +  +   AR N I + +G  E  L    LY T VL+ P G +    RK+           
Sbjct  64   LAGLAALARKNGIAIVIGLIERWLTGGRLYNTAVLLDPDGKLVGKYRKLHLFPEPRPPGF  123

Query  52   VERLVFGDGTGDTTESVTQTEIGRVGHLNCWENMNPFMKAYAAALGEQVHVAAWPLYPGK  111
             ER++F  G G T   V  T +G++G   C+E   P +    A  G ++ +      P  
Sbjct  124  RERVLFEPGDGGT---VFDTPLGKIGAAICYEIRFPELLRALALKGAEILINPSARAPFP  180

Query  112  ETLKYPDPFTNVAEANADLVTPAYAIETGTFTLAPWQTITAEGLKLNTPPGKELEDPHIY  171
             +L               L+  A A+E G F +A  Q             G E ED    
Sbjct  181  GSL---------GPPQWLLLARARALENGCFVIAANQV------------GGE-EDAPWP  218

Query  172  NGHGRIFGPDGQNLVAHPDKDFQGLLLVDIDLDEC  206
             GH  I  PDG+ ++A   +  +G+L+ DIDL   
Sbjct  219  YGHSMIIDPDGR-ILAGAGEWEEGVLIADIDLALV  252



Lambda      K        H        a         alpha
   0.317    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00018780

Length=406


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00013388

Length=311


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00013387

Length=238


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00018781

Length=406


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00018783

Length=271


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0652    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00018782

Length=373


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00018784

Length=217
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase. Th...  94.3    4e-24


>CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase.  This family 
contains hydrolases that break carbon-nitrogen bonds. The 
family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, 
Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. 
Nitrilase-related proteins generally have a conserved 
E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha 
sandwich proteins.
Length=257

 Score = 94.3 bits (235),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 56/213 (26%), Positives = 85/213 (40%), Gaps = 35/213 (16%)

Query  1    MRRIRNAARTNKIYVSLGYSEVDLAS--LYTTQVLISPSGDIPNHRRKIR-------ATH  51
            +  +   AR N I + +G  E  L    LY T VL+ P G +    RK+           
Sbjct  64   LAGLAALARKNGIAIVIGLIERWLTGGRLYNTAVLLDPDGKLVGKYRKLHLFPEPRPPGF  123

Query  52   VERLVFGDGTGDTTESVTQTEIGRVGHLNCWENMNPFMKAYAAALGEQVHVAAWPLYPGK  111
             ER++F  G G T   V  T +G++G   C+E   P +    A  G ++ +      P  
Sbjct  124  RERVLFEPGDGGT---VFDTPLGKIGAAICYEIRFPELLRALALKGAEILINPSARAPFP  180

Query  112  ETLKYPDPFTNVAEANADLVTPAYAIETGTFTLAPWQTITAEGLKLNTPPGKELEDPHIY  171
             +L               L+  A A+E G F +A  Q             G E ED    
Sbjct  181  GSL---------GPPQWLLLARARALENGCFVIAANQV------------GGE-EDAPWP  218

Query  172  NGHGRIFGPDGQNLVAHPDKDFQGLLLVDVSRA  204
             GH  I  PDG+ ++A   +  +G+L+ D+  A
Sbjct  219  YGHSMIIDPDGR-ILAGAGEWEEGVLIADIDLA  250



Lambda      K        H        a         alpha
   0.317    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00013389

Length=373


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00013390

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like...  79.4    4e-16
CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  64.6    7e-12


>CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This 
family includes FMO proteins, cyclohexanone mono-oxygenase 
and a number of different mono-oxygenases.
Length=531

 Score = 79.4 bits (196),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 60/231 (26%), Positives = 111/231 (48%), Gaps = 31/231 (13%)

Query  44   IIGAGISGI-----CTAIDLIKRSKCHNFIILEKSSGVGGTW--NDNRYPGSCCDVWSSL  96
            +IGAG+SG+     C    L     C      E+S  +GG W   +N   G    ++ S+
Sbjct  6    VIGAGVSGLASIKCCLEEGL--EPTC-----FERSDDIGGLWRFTENVEEGRA-SIYKSV  57

Query  97   YSYSFEQKADWT-----REYPG---QEEILDYLIGVAQKYGLYRYIRFNSAVE--EARWD  146
             + + ++ + ++      +YP      + L+Y    A+++ L +YI+F + V   + R D
Sbjct  58   ITNTSKEMSCFSDFPFPEDYPNFMHNSKFLEYFRMFAKEFDLLKYIQFKTTVCSVKKRPD  117

Query  147  EADL-KWKVGVRVSGGKDSQYLESYEITTDFLISAVGQLNVPRMPDIPGLDDYKGKLMHS  205
             +   +W+V     G ++S   ++  + T    +     ++P +   PG++ +KG+  HS
Sbjct  118  FSTSGQWEVVTEHEGKQESAVFDAVMVCTGHHTNP----HLP-LESFPGIEKFKGQYFHS  172

Query  206  ARWDWSFDWTGKRVAVIGNGATAAQIIPEIAKTAAHVSVYQRTPNWVMPRL  256
              +     +TGKRV VIG G +   I  E++ TAA V +  R  +WV+ R+
Sbjct  173  RDYKHPEGFTGKRVLVIGIGNSGGDIAVELSHTAAQVFLSTRRGSWVLSRV  223


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 64.6 bits (158),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 50/230 (22%), Positives = 78/230 (34%), Gaps = 32/230 (14%)

Query  43   VIIGAGISGICTAIDLIKRSKCHNFIILEKSSGVGGTWNDNRYPGSCCDVWSSLYSYSFE  102
            V+IG G +G+  A+ L  +      +I        GT      P   C     + S +  
Sbjct  4    VVIGGGPAGLAAALTL-AQLGGKVTLI-----EDEGTC-----PYGGC-----VLSKALL  47

Query  103  QKADWTREYPGQEEILDYLIGVAQKYGLYRYIRFNSAVEEARWDEADLKWKVGVRVSGGK  162
              A+         ++      V +K      I      E    D    K  +   V G  
Sbjct  48   GAAEAPEIASLWADLYKRKEEVVKKLN--NGIEVLLGTEVVSIDPGAKKVVLEELVDGDG  105

Query  163  DSQYLESYEITTDFLISAVGQLNVPRMPDIPGLDDYKGKL---MHSARWDWSFDWTGKRV  219
                     IT D L+ A G    PR+P IPG++   G L   + SA          KRV
Sbjct  106  -------ETITYDRLVIATGA--RPRLPPIPGVELNVGFLVRTLDSAE-ALRLKLLPKRV  155

Query  220  AVIGNGATAAQIIPEIAKTAAHVSVYQRTPNWVMPRLDRPVGAVQRALLT  269
             V+G G    ++   +AK    V++ +     ++   D  + A     L 
Sbjct  156  VVVGGGYIGVELAAALAKLGKEVTLIEALD-RLLRAFDEEISAALEKALE  204



Lambda      K        H        a         alpha
   0.320    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 750202856


Query= TCONS_00013391

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase. Th...  100     6e-26


>CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase.  This family 
contains hydrolases that break carbon-nitrogen bonds. The 
family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, 
Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. 
Nitrilase-related proteins generally have a conserved 
E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha 
sandwich proteins.
Length=257

 Score = 100 bits (252),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 58/215 (27%), Positives = 86/215 (40%), Gaps = 35/215 (16%)

Query  1    MRRIRNAARTNKIYVSLGYSEVDLAS--LYTTQVLISPSGDIPNHRRKIR-------ATH  51
            +  +   AR N I + +G  E  L    LY T VL+ P G +    RK+           
Sbjct  64   LAGLAALARKNGIAIVIGLIERWLTGGRLYNTAVLLDPDGKLVGKYRKLHLFPEPRPPGF  123

Query  52   VERLVFGDGTGDTTESVTQTEIGRVGHLNCWENMNPFMKAYAAALGEQVHVAAWPLYPGK  111
             ER++F  G G T   V  T +G++G   C+E   P +    A  G ++ +      P  
Sbjct  124  RERVLFEPGDGGT---VFDTPLGKIGAAICYEIRFPELLRALALKGAEILINPSARAPFP  180

Query  112  ETLKYPDPFTNVAEANADLVTPAYAIETGTFTLAPWQTITAEGLKLNTPPGKELEDPHIY  171
             +L               L+  A A+E G F +A  Q             G E ED    
Sbjct  181  GSL---------GPPQWLLLARARALENGCFVIAANQV------------GGE-EDAPWP  218

Query  172  NGHGRIFGPDGQNLVAHPDKDFQGLLLVDIDLDEC  206
             GH  I  PDG+ ++A   +  +G+L+ DIDL   
Sbjct  219  YGHSMIIDPDGR-ILAGAGEWEEGVLIADIDLALV  252



Lambda      K        H        a         alpha
   0.317    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00013392

Length=271


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00013393

Length=179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase. Th...  73.5    1e-16


>CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase.  This family 
contains hydrolases that break carbon-nitrogen bonds. The 
family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, 
Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. 
Nitrilase-related proteins generally have a conserved 
E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha 
sandwich proteins.
Length=257

 Score = 73.5 bits (181),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 49/118 (42%), Gaps = 12/118 (10%)

Query  1    MRRIRNAARTNKIYVSLGYSEVDLAS--LYTTQVLISPSGDIPNHRRKIR-------ATH  51
            +  +   AR N I + +G  E  L    LY T VL+ P G +    RK+           
Sbjct  64   LAGLAALARKNGIAIVIGLIERWLTGGRLYNTAVLLDPDGKLVGKYRKLHLFPEPRPPGF  123

Query  52   VERLVFGDGTGDTTESVTQTEIGRVGHLNCWENMNPFMKAYAAALGEQVHVAAWPLYP  109
             ER++F  G G T   V  T +G++G   C+E   P +    A  G ++ +      P
Sbjct  124  RERVLFEPGDGGT---VFDTPLGKIGAAICYEIRFPELLRALALKGAEILINPSARAP  178



Lambda      K        H        a         alpha
   0.319    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00013394

Length=179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase. Th...  73.5    1e-16


>CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase.  This family 
contains hydrolases that break carbon-nitrogen bonds. The 
family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, 
Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. 
Nitrilase-related proteins generally have a conserved 
E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha 
sandwich proteins.
Length=257

 Score = 73.5 bits (181),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 49/118 (42%), Gaps = 12/118 (10%)

Query  1    MRRIRNAARTNKIYVSLGYSEVDLAS--LYTTQVLISPSGDIPNHRRKIR-------ATH  51
            +  +   AR N I + +G  E  L    LY T VL+ P G +    RK+           
Sbjct  64   LAGLAALARKNGIAIVIGLIERWLTGGRLYNTAVLLDPDGKLVGKYRKLHLFPEPRPPGF  123

Query  52   VERLVFGDGTGDTTESVTQTEIGRVGHLNCWENMNPFMKAYAAALGEQVHVAAWPLYP  109
             ER++F  G G T   V  T +G++G   C+E   P +    A  G ++ +      P
Sbjct  124  RERVLFEPGDGGT---VFDTPLGKIGAAICYEIRFPELLRALALKGAEILINPSARAP  178



Lambda      K        H        a         alpha
   0.319    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00013395

Length=179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase. Th...  73.5    1e-16


>CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase.  This family 
contains hydrolases that break carbon-nitrogen bonds. The 
family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, 
Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. 
Nitrilase-related proteins generally have a conserved 
E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha 
sandwich proteins.
Length=257

 Score = 73.5 bits (181),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 49/118 (42%), Gaps = 12/118 (10%)

Query  1    MRRIRNAARTNKIYVSLGYSEVDLAS--LYTTQVLISPSGDIPNHRRKIR-------ATH  51
            +  +   AR N I + +G  E  L    LY T VL+ P G +    RK+           
Sbjct  64   LAGLAALARKNGIAIVIGLIERWLTGGRLYNTAVLLDPDGKLVGKYRKLHLFPEPRPPGF  123

Query  52   VERLVFGDGTGDTTESVTQTEIGRVGHLNCWENMNPFMKAYAAALGEQVHVAAWPLYP  109
             ER++F  G G T   V  T +G++G   C+E   P +    A  G ++ +      P
Sbjct  124  RERVLFEPGDGGT---VFDTPLGKIGAAICYEIRFPELLRALALKGAEILINPSARAP  178



Lambda      K        H        a         alpha
   0.319    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00013396

Length=263
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase. Th...  125     2e-35


>CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase.  This family 
contains hydrolases that break carbon-nitrogen bonds. The 
family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, 
Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. 
Nitrilase-related proteins generally have a conserved 
E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha 
sandwich proteins.
Length=257

 Score = 125 bits (315),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 85/194 (44%), Gaps = 25/194 (13%)

Query  9    KAAAVNAEPGWFDLEESVRRTIHWIDEAGKAGCKFIAFPELWIPGYPYWAWKVNYQESLP  68
            + A V    G++DLE ++++ +  I+EA + G   I  PEL+I GYP WA          
Sbjct  1    RVALVQLPQGFWDLEANLQKALELIEEAARYGADLIVLPELFITGYPCWA----------  50

Query  69   LLKKYRENSLPSDSEEMRRIRNAARTNKIYVSLGYSEVDLAS--LYTTQVLISPSGDIPN  126
                + E +   D E +  +   AR N I + +G  E  L    LY T VL+ P G +  
Sbjct  51   ---HFLEAAEVGDGETLAGLAALARKNGIAIVIGLIERWLTGGRLYNTAVLLDPDGKLVG  107

Query  127  HRRKIR-------ATHVERLVFGDGTGDTTESVTQTEIGRVGHLNCWENMNPFMKAYAAA  179
              RK+            ER++F  G G T   V  T +G++G   C+E   P +    A 
Sbjct  108  KYRKLHLFPEPRPPGFRERVLFEPGDGGT---VFDTPLGKIGAAICYEIRFPELLRALAL  164

Query  180  LGEQVHVAAWPLYP  193
             G ++ +      P
Sbjct  165  KGAEILINPSARAP  178



Lambda      K        H        a         alpha
   0.318    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 290477132


Query= TCONS_00013397

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase. Th...  152     8e-45


>CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase.  This family 
contains hydrolases that break carbon-nitrogen bonds. The 
family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, 
Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. 
Nitrilase-related proteins generally have a conserved 
E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha 
sandwich proteins.
Length=257

 Score = 152 bits (387),  Expect = 8e-45, Method: Composition-based stats.
 Identities = 81/291 (28%), Positives = 122/291 (42%), Gaps = 48/291 (16%)

Query  9    KAAAVNAEPGWFDLEESVRRTIHWIDEAGKAGCKFIAFPELWIPGYPYWAWKVNYQESLP  68
            + A V    G++DLE ++++ +  I+EA + G   I  PEL+I GYP WA          
Sbjct  1    RVALVQLPQGFWDLEANLQKALELIEEAARYGADLIVLPELFITGYPCWA----------  50

Query  69   LLKKYRENSLPSDSEEMRRIRNAARTNKIYVSLGYSEVDLAS--LYTTQVLISPSGDIPN  126
                + E +   D E +  +   AR N I + +G  E  L    LY T VL+ P G +  
Sbjct  51   ---HFLEAAEVGDGETLAGLAALARKNGIAIVIGLIERWLTGGRLYNTAVLLDPDGKLVG  107

Query  127  HRRKIR-------ATHVERLVFGDGTGDTTESVTQTEIGRVGHLNCWENMNPFMKAYAAA  179
              RK+            ER++F  G G T   V  T +G++G   C+E   P +    A 
Sbjct  108  KYRKLHLFPEPRPPGFRERVLFEPGDGGT---VFDTPLGKIGAAICYEIRFPELLRALAL  164

Query  180  LGEQVHVAAWPLYPGKETLKYPDPFTNVAEANADLVTPAYAIETGTFTLAPWQTITAEGL  239
             G ++ +      P   +L               L+  A A+E G F +A  Q       
Sbjct  165  KGAEILINPSARAPFPGSL---------GPPQWLLLARARALENGCFVIAANQV------  209

Query  240  KLNTPPGKELEDPHIYNGHGRIFGPDGQNLVAHPDKDFQGLLLVDIDLDEC  290
                  G E ED     GH  I  PDG+ ++A   +  +G+L+ DIDL   
Sbjct  210  ------GGE-EDAPWPYGHSMIIDPDGR-ILAGAGEWEEGVLIADIDLALV  252



Lambda      K        H        a         alpha
   0.317    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00013398

Length=389


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00013399

Length=651


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 822932820


Query= TCONS_00013403

Length=530


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 664674974


Query= TCONS_00013401

Length=672


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 853903410


Query= TCONS_00013402

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00018785

Length=316


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00018786

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00018787

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00013404

Length=295


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00013405

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00013406

Length=587
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase. This ent...  165     2e-49
CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  85.2    3e-20
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  64.3    7e-13


>CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=119

 Score = 165 bits (419),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 57/118 (48%), Positives = 79/118 (67%), Gaps = 2/118 (2%)

Query  25   DLTWETGSPNGVSR-EMIFVNGQFPGPAIILNEGDEAIIDVTNHLPFNTSIHFHGIEQKN  83
             +T+ T SP G +R  +I VNGQFPGP I + EGD  +++VTN+L   TSIH+HG++Q+ 
Sbjct  1    TVTYGTVSPLGGTRQAVIGVNGQFPGPTIRVREGDTVVVNVTNNLDEPTSIHWHGLQQRG  60

Query  84   TPWADGVVGLSQWAIQPGQSYTYQWRA-DTYGTYWYHAHDKAEIMDGLYGPVHIRPRP  140
            TPW DGV G++Q  I PGQS+TY+++     GTYWYH+H   +   GL G + I  R 
Sbjct  61   TPWMDGVPGVTQCPIPPGQSFTYRFQVKQQAGTYWYHSHTSGQQAAGLAGAIIIEDRA  118


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 85.2 bits (211),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 40/119 (34%), Positives = 51/119 (43%), Gaps = 17/119 (14%)

Query  458  ITTRNDTWVDIVFQLVVSETTPIQPPHPLHKHSNKGFLLGTGHGKFNWTSIKEAKEASPE  517
            IT    T V+ V Q            HP H H +   +LG G G   W       E  P+
Sbjct  36   ITLPYGTVVEWVLQ------NTTTGVHPFHLHGHSFQVLGRGGG--PWP------EEDPK  81

Query  518  SF-LETPVYRDTFTTSPQGETWTAIRYHVENPGPFLLHCHMTTHLQSGMGLILMDGVDV  575
            ++ L  PV RDT    P G  W AIR+  +NPG +L HCH+  HL  GM    +     
Sbjct  82   TYNLVDPVRRDTVQVPPGG--WVAIRFRADNPGVWLFHCHILWHLDQGMMGQFVVRPGD  138


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 64.3 bits (157),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 25/66 (38%), Positives = 38/66 (58%), Gaps = 0/66 (0%)

Query  283  FHFISAASLKVLVVSIDEHPMYVYEVDGRYIEPQLAHSVKLYNGERYSVMVKLDKEPANY  342
               I+ A    L  SI+ H M V EVDG Y+ P    S+ ++ G+RYSV+V  +++P NY
Sbjct  62   LRIINVALDDSLNFSIEGHKMTVVEVDGVYVNPFTVDSLDIFPGQRYSVLVTANQDPGNY  121

Query  343  KMRAAN  348
             + A+ 
Sbjct  122  WIVASP  127



Lambda      K        H        a         alpha
   0.317    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 739741860


Query= TCONS_00013407

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  86.3    2e-21


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 86.3 bits (214),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 40/119 (34%), Positives = 51/119 (43%), Gaps = 17/119 (14%)

Query  156  ITTRNDTWVDIVFQLVVSETTPIQPPHPLHKHSNKGFLLGTGHGKFNWTSIKEAKEASPE  215
            IT    T V+ V Q            HP H H +   +LG G G   W       E  P+
Sbjct  36   ITLPYGTVVEWVLQ------NTTTGVHPFHLHGHSFQVLGRGGG--PWP------EEDPK  81

Query  216  SF-LETPVYRDTFTTSPQGETWTAIRYHVENPGPFLLHCHMTTHLQSGMGLILMDGVDV  273
            ++ L  PV RDT    P G  W AIR+  +NPG +L HCH+  HL  GM    +     
Sbjct  82   TYNLVDPVRRDTVQVPPGG--WVAIRFRADNPGVWLFHCHILWHLDQGMMGQFVVRPGD  138



Lambda      K        H        a         alpha
   0.316    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00013408

Length=664
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase. This ent...  151     8e-44
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  127     1e-34
CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  126     1e-34


>CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=119

 Score = 151 bits (383),  Expect = 8e-44, Method: Composition-based stats.
 Identities = 52/120 (43%), Positives = 69/120 (58%), Gaps = 3/120 (3%)

Query  26   NITWVWAAPDGF-GRPMIGINNEWPCPIVNADLGDRLIVDVHNGLGNQSTGIHWHGFHQY  84
             +T+   +P G   + +IG+N ++P P +    GD ++V+V N L ++ T IHWHG  Q 
Sbjct  1    TVTYGTVSPLGGTRQAVIGVNGQFPGPTIRVREGDTVVVNVTNNL-DEPTSIHWHGLQQR  59

Query  85   MTGTMDGSNQVTQCALPPGSSMRYEFDVNQT-GTYWYHSHEMGQYPDGLRGPFIVRDPSP  143
             T  MDG   VTQC +PPG S  Y F V Q  GTYWYHSH  GQ   GL G  I+ D + 
Sbjct  60   GTPWMDGVPGVTQCPIPPGQSFTYRFQVKQQAGTYWYHSHTSGQQAAGLAGAIIIEDRAS  119


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 127 bits (320),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 18/162 (11%)

Query  149  DEFTLTLTDHYHEQMSVLLQQYEADSVGAQAGVNEPLPAAALINE--GFDTTTLRVEPNK  206
            +++ +TL+D YH+    L ++  A           P+P A LIN   G    TL V P K
Sbjct  1    EDYVITLSDWYHKDAKDLEKELLASGKAPTDF--PPVPDAVLINGKDGASLATLTVTPGK  58

Query  207  TYLIHLVCVGNWPGHVIVFDDHEISVVEVDGTWVDAYPARDKKIRLATGQRMSILLKTKD  266
            TY + ++ V          + H+++VVEVDG +V+  P     + +  GQR S+L+   +
Sbjct  59   TYRLRIINVALDDSLNFSIEGHKMTVVEVDGVYVN--PFTVDSLDIFPGQRYSVLVTA-N  115

Query  267  NTDRNYAIWDSMDVNMMFFYQNRAIPEGFNPNTTAWLVYDEA  308
                NY I  S             IP   N    A L Y  A
Sbjct  116  QDPGNYWIVASP-----------NIPAFDNGTAAAILRYSGA  146


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 126 bits (318),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 72/139 (52%), Gaps = 5/139 (4%)

Query  370  YVDPEEPTLYTALAASPEN---ASNASLYG-QVNPFVVQYGEVVEIIINNHHGNLHPWHM  425
               P+ PTL    + +      A N  L+    N   + YG VVE ++ N    +HP+H+
Sbjct  1    DTPPKLPTLLQITSGNFRRNDWAINGLLFPPNTNVITLPYGTVVEWVLQNTTTGVHPFHL  60

Query  426  HGHQFQVLQRTIPEGGYFDGYFANISSTPVKRDTIMVQNHGHAVLRFRANNPGVWLIHCH  485
            HGH FQVL R        D    N+   PV+RDT+ V   G   +RFRA+NPGVWL HCH
Sbjct  61   HGHSFQVLGRGGGPWPEEDPKTYNLV-DPVRRDTVQVPPGGWVAIRFRADNPGVWLFHCH  119

Query  486  IEWHVTKGLTGTLIEAPAQ  504
            I WH+ +G+ G  +  P  
Sbjct  120  ILWHLDQGMMGQFVVRPGD  138



Lambda      K        H        a         alpha
   0.316    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 842105090


Query= TCONS_00013409

Length=1061
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  296     9e-94
CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          159     1e-43
CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  132     8e-37


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 296 bits (761),  Expect = 9e-94, Method: Composition-based stats.
 Identities = 106/255 (42%), Positives = 138/255 (54%), Gaps = 9/255 (4%)

Query  88   SKIAIIGMSGRFPEADGIEAFWDLLYKGLDVHKKVPPERWDVDAHVDLTGTKRNTSKVPY  147
              +AI+GM  RFP  +  E FW+ L +G D   ++P +RWD D   D            +
Sbjct  1    EPVAIVGMGCRFPGGNDPEEFWENLLEGRDGISEIPADRWDPDKLYDPPSRIAGKIYTKW  60

Query  148  GCWINEPGLFDARFFNMSPREALQADPAQRLALLSAYEALEMAGFVPNSSPSTQRDRVGI  207
            G  +++   FD  FF +SPREA + DP QRL L +A+EALE AG  P+S   +   R G+
Sbjct  61   GG-LDDIFDFDPLFFGISPREAERMDPQQRLLLEAAWEALEDAGITPDSLDGS---RTGV  116

Query  208  FMGMTSDDYREI----NSGQDIDTY-FIPGGNRAFTPGRINYYFKFSGPSVSVDTACSSS  262
            F+G    DY  +      G       F  G   +   GRI+Y+    GPSV+VDTACSSS
Sbjct  117  FIGSGIGDYAALLLLDEDGGPRRGSPFAVGTMPSVIAGRISYFLGLRGPSVTVDTACSSS  176

Query  263  LAAIHLACNAIWRNDCDTAISGGVNLLTNPDNHAGLDRGHFLSRTGNCNTFDDGADGYCR  322
            L AIH A  +I   + D A++GGVNLL  P   AG      LS  G C  FD  ADG+ R
Sbjct  177  LVAIHAAVQSIRSGEADVALAGGVNLLLTPLGFAGFSAAGMLSPDGPCKAFDPFADGFVR  236

Query  323  ADGVGTIVLKRLEDA  337
             +GVG +VLKRL DA
Sbjct  237  GEGVGAVVLKRLSDA  251


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 159 bits (404),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 101/330 (31%), Positives = 150/330 (45%), Gaps = 22/330 (7%)

Query  624  FVFTGQGAQYTGMGKQLYEDCATFRSTIHRLD-CIAQSQGFPSILPLIDGSMPVEELSPV  682
            FVF+GQG+Q+ GMG QL +    F + I R D       GF S+  ++  + P   L   
Sbjct  2    FVFSGQGSQWAGMGMQLLKTSPAFAAVIDRADEAFKPQYGF-SVSDVLR-NNPEGTLDGT  59

Query  683  -VTQLGTTCLQMALVDYWKGLGVTPAFVLGHSLGDYAALNSAGVLSTSDTIYLCGRRAQL  741
               Q     +Q+AL    +  GV P  V+GHSLG+YAA   AG LS  + +     R++L
Sbjct  60   QFVQPALFAMQIALAALLQSYGVRPDAVVGHSLGEYAAAVVAGALSPEEALLAAVLRSRL  119

Query  742  LTQQCQMGTHAMLAVKAAVSEIQHLLDPDVHAVACINGPTETVISGLSGRIDELAQQCSS  801
            + Q    G   M AV+ +  E++     DV   A +N P   VISG    + EL ++ S 
Sbjct  120  MMQ--LAGPGGMAAVELSAEEVEQRWPDDV-VGAVVNSPRSVVISGPQEAVRELVERVSK  176

Query  802  QNLKSTKLKVPFAFHSAQVDPILESFEESAQGVIFHEPAVPFVSALNGEVITESNYSVLG  861
            + + +    V +A HS Q+D I  +   +   +    P VPF+S+ +   I  S+   L 
Sbjct  177  EGVGALVENVNYAVHSPQMDAIAPALLSALADIAPRTPRVPFISSTS---IDPSDQRTLS  233

Query  862  PTYMVKHCREAVNFLGALEATRHAKLMDDATL-WVEVGSHPICSGMIKSTF-----GPQA  915
              Y V++ R  V F    EA   A   +   L ++E+  HP+    +  T      G  A
Sbjct  234  AEYWVRNLRSPVRF---AEAILSA--AEPGPLVFIEISPHPLLLAALIDTLKSASDGKVA  288

Query  916  TTVPSLRRD-DDPWKILSNSLSTLHLAGVE  944
            T V +L RD  D        L+  HL G  
Sbjct  289  TLVGTLIRDQTDFLVTFLYILAVAHLTGSA  318


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 132 bits (335),  Expect = 8e-37, Method: Composition-based stats.
 Identities = 46/121 (38%), Positives = 66/121 (55%), Gaps = 3/121 (2%)

Query  345  LGVINAAYTNHSAEAVSITRPHVGAQAFIFNKLLNDTNTNPHEIGYVEMHGTGTQAGDAV  404
              VI  +  NH      +T P+   QA    + L D   +P ++ YVE HGTGT  GD +
Sbjct  1    YAVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDPEDVDYVEAHGTGTPLGDPI  60

Query  405  EMQSVLDVFAPDYRRGPANSLYLGSAKSNIGHGESASGVTSLVKVLLMLKQNMIPPHCGI  464
            E +++  VF    R+ P   L +GS KSNIGH E A+G   L+KV+L L+  +IPP   +
Sbjct  61   EAEALKRVFGSGARKQP---LAIGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTLNL  117

Query  465  K  465
            +
Sbjct  118  E  118



Lambda      K        H        a         alpha
   0.318    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1366320340


Query= TCONS_00013410

Length=1061
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  296     9e-94
CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          159     1e-43
CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  132     8e-37


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 296 bits (761),  Expect = 9e-94, Method: Composition-based stats.
 Identities = 106/255 (42%), Positives = 138/255 (54%), Gaps = 9/255 (4%)

Query  88   SKIAIIGMSGRFPEADGIEAFWDLLYKGLDVHKKVPPERWDVDAHVDLTGTKRNTSKVPY  147
              +AI+GM  RFP  +  E FW+ L +G D   ++P +RWD D   D            +
Sbjct  1    EPVAIVGMGCRFPGGNDPEEFWENLLEGRDGISEIPADRWDPDKLYDPPSRIAGKIYTKW  60

Query  148  GCWINEPGLFDARFFNMSPREALQADPAQRLALLSAYEALEMAGFVPNSSPSTQRDRVGI  207
            G  +++   FD  FF +SPREA + DP QRL L +A+EALE AG  P+S   +   R G+
Sbjct  61   GG-LDDIFDFDPLFFGISPREAERMDPQQRLLLEAAWEALEDAGITPDSLDGS---RTGV  116

Query  208  FMGMTSDDYREI----NSGQDIDTY-FIPGGNRAFTPGRINYYFKFSGPSVSVDTACSSS  262
            F+G    DY  +      G       F  G   +   GRI+Y+    GPSV+VDTACSSS
Sbjct  117  FIGSGIGDYAALLLLDEDGGPRRGSPFAVGTMPSVIAGRISYFLGLRGPSVTVDTACSSS  176

Query  263  LAAIHLACNAIWRNDCDTAISGGVNLLTNPDNHAGLDRGHFLSRTGNCNTFDDGADGYCR  322
            L AIH A  +I   + D A++GGVNLL  P   AG      LS  G C  FD  ADG+ R
Sbjct  177  LVAIHAAVQSIRSGEADVALAGGVNLLLTPLGFAGFSAAGMLSPDGPCKAFDPFADGFVR  236

Query  323  ADGVGTIVLKRLEDA  337
             +GVG +VLKRL DA
Sbjct  237  GEGVGAVVLKRLSDA  251


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 159 bits (404),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 101/330 (31%), Positives = 150/330 (45%), Gaps = 22/330 (7%)

Query  624  FVFTGQGAQYTGMGKQLYEDCATFRSTIHRLD-CIAQSQGFPSILPLIDGSMPVEELSPV  682
            FVF+GQG+Q+ GMG QL +    F + I R D       GF S+  ++  + P   L   
Sbjct  2    FVFSGQGSQWAGMGMQLLKTSPAFAAVIDRADEAFKPQYGF-SVSDVLR-NNPEGTLDGT  59

Query  683  -VTQLGTTCLQMALVDYWKGLGVTPAFVLGHSLGDYAALNSAGVLSTSDTIYLCGRRAQL  741
               Q     +Q+AL    +  GV P  V+GHSLG+YAA   AG LS  + +     R++L
Sbjct  60   QFVQPALFAMQIALAALLQSYGVRPDAVVGHSLGEYAAAVVAGALSPEEALLAAVLRSRL  119

Query  742  LTQQCQMGTHAMLAVKAAVSEIQHLLDPDVHAVACINGPTETVISGLSGRIDELAQQCSS  801
            + Q    G   M AV+ +  E++     DV   A +N P   VISG    + EL ++ S 
Sbjct  120  MMQ--LAGPGGMAAVELSAEEVEQRWPDDV-VGAVVNSPRSVVISGPQEAVRELVERVSK  176

Query  802  QNLKSTKLKVPFAFHSAQVDPILESFEESAQGVIFHEPAVPFVSALNGEVITESNYSVLG  861
            + + +    V +A HS Q+D I  +   +   +    P VPF+S+ +   I  S+   L 
Sbjct  177  EGVGALVENVNYAVHSPQMDAIAPALLSALADIAPRTPRVPFISSTS---IDPSDQRTLS  233

Query  862  PTYMVKHCREAVNFLGALEATRHAKLMDDATL-WVEVGSHPICSGMIKSTF-----GPQA  915
              Y V++ R  V F    EA   A   +   L ++E+  HP+    +  T      G  A
Sbjct  234  AEYWVRNLRSPVRF---AEAILSA--AEPGPLVFIEISPHPLLLAALIDTLKSASDGKVA  288

Query  916  TTVPSLRRD-DDPWKILSNSLSTLHLAGVE  944
            T V +L RD  D        L+  HL G  
Sbjct  289  TLVGTLIRDQTDFLVTFLYILAVAHLTGSA  318


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 132 bits (335),  Expect = 8e-37, Method: Composition-based stats.
 Identities = 46/121 (38%), Positives = 66/121 (55%), Gaps = 3/121 (2%)

Query  345  LGVINAAYTNHSAEAVSITRPHVGAQAFIFNKLLNDTNTNPHEIGYVEMHGTGTQAGDAV  404
              VI  +  NH      +T P+   QA    + L D   +P ++ YVE HGTGT  GD +
Sbjct  1    YAVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDPEDVDYVEAHGTGTPLGDPI  60

Query  405  EMQSVLDVFAPDYRRGPANSLYLGSAKSNIGHGESASGVTSLVKVLLMLKQNMIPPHCGI  464
            E +++  VF    R+ P   L +GS KSNIGH E A+G   L+KV+L L+  +IPP   +
Sbjct  61   EAEALKRVFGSGARKQP---LAIGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTLNL  117

Query  465  K  465
            +
Sbjct  118  E  118



Lambda      K        H        a         alpha
   0.318    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0675    0.140     1.90     42.6     43.6 

Effective search space used: 1366320340


Query= TCONS_00013411

Length=168
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:202497 pfam02982, Scytalone_dh, Scytalone dehydratase. Scytal...  305     6e-109


>CDD:202497 pfam02982, Scytalone_dh, Scytalone dehydratase.  Scytalone dehydratases 
are structurally related to the NTF2 family (see 
pfam02136).
Length=160

 Score = 305 bits (783),  Expect = 6e-109, Method: Composition-based stats.
 Identities = 123/160 (77%), Positives = 139/160 (87%), Gaps = 0/160 (0%)

Query  9    TLEFHDYLALKKVLFDWADSYDAKDWDRLRSIIAPTLTVDYRQIGLRKWDDMPAEDYMAM  68
            T+ FHDYL LKKVLF+WADSYD+KDWDRLR IIAPTL +DYR    +KW+ MPAE++MAM
Sbjct  1    TITFHDYLGLKKVLFEWADSYDSKDWDRLRKIIAPTLRIDYRSFLDKKWEAMPAEEFMAM  60

Query  69   ISDMDFLGDPTVKTQHLLGESWWEKISDTEVIGHHQLRAAHQVYTDSTLQTVKLKGHGHA  128
            ISD D LGDPT+KTQH +G S WEK+SDTEVIGHHQLR  HQVYTDSTLQ VKLKGH H+
Sbjct  61   ISDKDVLGDPTLKTQHFIGGSRWEKVSDTEVIGHHQLRVPHQVYTDSTLQEVKLKGHAHS  120

Query  129  TNEHYYRKVDGVWKFAGLKPTVRWNEYQFEDVFRAAKPSV  168
            TNEH+YRKVDGVWKFAGLKPT+RWNEY F+DVFR  +PSV
Sbjct  121  TNEHWYRKVDGVWKFAGLKPTIRWNEYDFDDVFRDGRPSV  160



Lambda      K        H        a         alpha
   0.320    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00013412

Length=2146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  298     1e-92
CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflat...  288     5e-89
CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          161     6e-44
CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  135     3e-37
CDD:395776 pfam00975, Thioesterase, Thioesterase domain. Peptide ...  109     5e-27
CDD:425746 pfam00550, PP-binding, Phosphopantetheine attachment s...  69.9    4e-15


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 298 bits (766),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 106/255 (42%), Positives = 138/255 (54%), Gaps = 9/255 (4%)

Query  376  SKIAIIGMSGRFPEADGIEAFWDLLYKGLDVHKKVPPERWDVDAHVDLTGTKRNTSKVPY  435
              +AI+GM  RFP  +  E FW+ L +G D   ++P +RWD D   D            +
Sbjct  1    EPVAIVGMGCRFPGGNDPEEFWENLLEGRDGISEIPADRWDPDKLYDPPSRIAGKIYTKW  60

Query  436  GCWINEPGLFDARFFNMSPREALQADPAQRLALLSAYEALEMAGFVPNSSPSTQRDRVGI  495
            G  +++   FD  FF +SPREA + DP QRL L +A+EALE AG  P+S   +   R G+
Sbjct  61   GG-LDDIFDFDPLFFGISPREAERMDPQQRLLLEAAWEALEDAGITPDSLDGS---RTGV  116

Query  496  FMGMTSDDYREI----NSGQDIDTY-FIPGGNRAFTPGRINYYFKFSGPSVSVDTACSSS  550
            F+G    DY  +      G       F  G   +   GRI+Y+    GPSV+VDTACSSS
Sbjct  117  FIGSGIGDYAALLLLDEDGGPRRGSPFAVGTMPSVIAGRISYFLGLRGPSVTVDTACSSS  176

Query  551  LAAIHLACNAIWRNDCDTAISGGVNLLTNPDNHAGLDRGHFLSRTGNCNTFDDGADGYCR  610
            L AIH A  +I   + D A++GGVNLL  P   AG      LS  G C  FD  ADG+ R
Sbjct  177  LVAIHAAVQSIRSGEADVALAGGVNLLLTPLGFAGFSAAGMLSPDGPCKAFDPFADGFVR  236

Query  611  ADGVGTIVLKRLEDA  625
             +GVG +VLKRL DA
Sbjct  237  GEGVGAVVLKRLSDA  251


>CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflatoxin biosynthesis. 
 SAT is the N-terminal starter unit:ACP transacylase 
of the aflatoxin biosynthesis pathway. SAT selects the 
hexanoyl starter unit from a pair of specialized fungal fatty 
acid synthase subunits (HexA/HexB) and transfers it onto the 
polyketide synthase A acyl-carrier protein to prime polyketide 
chain elongation. The family is found in association with 
pfam02801, pfam00109, pfam00550, pfam00975, pfam00698.
Length=239

 Score = 288 bits (739),  Expect = 5e-89, Method: Composition-based stats.
 Identities = 109/239 (46%), Positives = 151/239 (63%), Gaps = 2/239 (1%)

Query  8    YLFGDQTISCDEGLRNLLQAKNHTIVASFIERCFHALRQEITRLPPSQRTLFPRFTSIAD  67
             LFGDQT+    GLR LL+AK++ ++ASF+ER   ALR EI+RLP ++R   PRFTS+ +
Sbjct  1    LLFGDQTLDFLPGLRQLLRAKDNPLLASFLERAADALRAEISRLPRAERDSLPRFTSLQE  60

Query  68   LLAQ-HRESGTNPALGSALTCIYQLGCFIDYHGDRGHPYPSSDD-GLLGSCTGMLSCTAV  125
            LL + +     NPAL SAL CI QLG FIDY  + G  YPS     L+G CTG+L+  AV
Sbjct  61   LLERYYASGDKNPALESALLCIAQLGHFIDYLEENGEDYPSPSSTYLVGLCTGLLAAAAV  120

Query  126  SSCKNVGELLPLAVEIVRLTIHLGLCVMRVREMVDSTESSSGSWSILVSEINEADATSLI  185
            S  +++ EL+PLAVE VR+   LGL V RV + ++ + SS GSWS++V  ++E +A   +
Sbjct  121  SCSRSLSELVPLAVEAVRIAFRLGLLVQRVADRLEGSSSSPGSWSLVVPGLSEEEAEKAL  180

Query  186  GNFVKKRGIPPSSQPYISAVGSKGLTISAPPEILDNFIEEGLPKEYKHFKAPGVSGPYH  244
              F + +GIPP+S+PYISAV    +TIS PP  L+  +     K+        +  PYH
Sbjct  181  EQFNESKGIPPASRPYISAVSPSSVTISGPPSTLELLLSSSPAKKSLPKTPLPIYAPYH  239


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 161 bits (409),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 101/330 (31%), Positives = 150/330 (45%), Gaps = 22/330 (7%)

Query  912   FVFTGQGAQYTGMGKQLYEDCATFRSTIHRLD-CIAQSQGFPSILPLIDGSMPVEELSPV  970
             FVF+GQG+Q+ GMG QL +    F + I R D       GF S+  ++  + P   L   
Sbjct  2     FVFSGQGSQWAGMGMQLLKTSPAFAAVIDRADEAFKPQYGF-SVSDVLR-NNPEGTLDGT  59

Query  971   -VTQLGTTCLQMALVDYWKGLGVTPAFVLGHSLGDYAALNSAGVLSTSDTIYLCGRRAQL  1029
                Q     +Q+AL    +  GV P  V+GHSLG+YAA   AG LS  + +     R++L
Sbjct  60    QFVQPALFAMQIALAALLQSYGVRPDAVVGHSLGEYAAAVVAGALSPEEALLAAVLRSRL  119

Query  1030  LTQQCQMGTHAMLAVKAAVSEIQHLLDPDVHAVACINGPTETVISGLSGRIDELAQQCSS  1089
             + Q    G   M AV+ +  E++     DV   A +N P   VISG    + EL ++ S 
Sbjct  120   MMQ--LAGPGGMAAVELSAEEVEQRWPDDV-VGAVVNSPRSVVISGPQEAVRELVERVSK  176

Query  1090  QNLKSTKLKVPFAFHSAQVDPILESFEESAQGVIFHEPAVPFVSALNGEVITESNYSVLG  1149
             + + +    V +A HS Q+D I  +   +   +    P VPF+S+ +   I  S+   L 
Sbjct  177   EGVGALVENVNYAVHSPQMDAIAPALLSALADIAPRTPRVPFISSTS---IDPSDQRTLS  233

Query  1150  PTYMVKHCREAVNFLGALEATRHAKLMDDATL-WVEVGSHPICSGMIKSTF-----GPQA  1203
               Y V++ R  V F    EA   A   +   L ++E+  HP+    +  T      G  A
Sbjct  234   AEYWVRNLRSPVRF---AEAILSA--AEPGPLVFIEISPHPLLLAALIDTLKSASDGKVA  288

Query  1204  TTVPSLRRD-DDPWKILSNSLSTLHLAGVE  1232
             T V +L RD  D        L+  HL G  
Sbjct  289   TLVGTLIRDQTDFLVTFLYILAVAHLTGSA  318


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 135 bits (341),  Expect = 3e-37, Method: Composition-based stats.
 Identities = 46/121 (38%), Positives = 66/121 (55%), Gaps = 3/121 (2%)

Query  633  LGVINAAYTNHSAEAVSITRPHVGAQAFIFNKLLNDTNTNPHEIGYVEMHGTGTQAGDAV  692
              VI  +  NH      +T P+   QA    + L D   +P ++ YVE HGTGT  GD +
Sbjct  1    YAVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDPEDVDYVEAHGTGTPLGDPI  60

Query  693  EMQSVLDVFAPDYRRGPANSLYLGSAKSNIGHGESASGVTSLVKVLLMLKQNMIPPHCGI  752
            E +++  VF    R+ P   L +GS KSNIGH E A+G   L+KV+L L+  +IPP   +
Sbjct  61   EAEALKRVFGSGARKQP---LAIGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTLNL  117

Query  753  K  753
            +
Sbjct  118  E  118


>CDD:395776 pfam00975, Thioesterase, Thioesterase domain.  Peptide synthetases 
are involved in the non-ribosomal synthesis of peptide 
antibiotics. Next to the operons encoding these enzymes, in 
almost all cases, are genes that encode proteins that have 
similarity to the type II fatty acid thioesterases of vertebrates. 
There are also modules within the peptide synthetases 
that also share this similarity. With respect to antibiotic 
production, thioesterases are required for the addition of 
the last amino acid to the peptide antibiotic, thereby forming 
a cyclic antibiotic. Thioesterases (non-integrated) have 
molecular masses of 25-29 kDa.
Length=223

 Score = 109 bits (274),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 90/245 (37%), Gaps = 35/245 (14%)

Query  1892  KLFMFPDGSGSASSYATIPALSPDVCVYGLNCPY--MKTPQNLTCSLDELTEPYLAEIRR  1949
              LF FP   GSASS+ ++    P      L   Y      +    S++ L + Y   +R+
Sbjct  2     PLFCFPPAGGSASSFRSLARRLPPPAE-VLAVQYPGRGRGEPPLNSIEALADEYAEALRQ  60

Query  1950  RQPKGPYSFGGWSAGGICAFDAARQLILEEGEEVERLLLLDSPFPIGLEKLPPRLYKFFN  2009
              QP+GPY+  G S GG+ AF+ AR+L   +GE V  L L D+  P  +     R      
Sbjct  61    IQPEGPYALFGHSMGGMLAFEVARRL-ERQGEAVRSLFLSDASAPHTVRYEASRAPDDDE  119

Query  2010  SIGLFGDGKRAPPDWLLPHFLAFIDSLDAYKAVPLPFNDSKWAKKMPKTYLIWAKDGVCG  2069
              +  F D    P + LL         L A +A                 Y          
Sbjct  120   VVAEFTDEGGTPEE-LLEDEELLSMLLPALRAD----------------YRALESY---S  159

Query  2070  KPGDPRPEPA-EDGSEDPREMQWLLNDRTDLGPNKWDTLVGPQNIGGIHVMEDANHFTMT  2128
              P           GS+DP      L+D  DL     D   G  ++     + D +HF + 
Sbjct  160   CPPLDAQSATLFYGSDDP------LHDADDLAEWVRDHTPGEFDV----HVFDGDHFYLI  209

Query  2129  TGQKA  2133
                +A
Sbjct  210   EHLEA  214


>CDD:425746 pfam00550, PP-binding, Phosphopantetheine attachment site.  A 
4'-phosphopantetheine prosthetic group is attached through 
a serine. This prosthetic group acts as a a 'swinging arm' for 
the attachment of activated fatty acid and amino-acid groups. 
This domain forms a four helix bundle. This family includes 
members not included in Prosite. The inclusion of these 
members is supported by sequence analysis and functional evidence. 
The related domain of the anguibactin system regulator 
AngR has the attachment serine replaced by an alanine.
Length=62

 Score = 69.9 bits (172),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 0/60 (0%)

Query  1777  ICSIIAEEIGVSVGDIDPSDNLPEMGMDSLLSLTVLGRIRETLGMDLPAEFFLENPTLDA  1836
             +  ++AE +GV   +IDP  +L ++G+DSLL++ ++ R+ E  G+++P     E+PTL  
Sbjct  3     LRELLAEVLGVPAEEIDPDTDLFDLGLDSLLAVELIARLEEEFGVEIPPSDLFEHPTLAE  62


 Score = 59.9 bits (146),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 17/59 (29%), Positives = 33/59 (56%), Gaps = 0/59 (0%)

Query  1654  LEILAAEVGLSEAEMTDSLNFADYGVDSLLSLTVTGRYREELNLDLESSVFMDYPTIKD  1712
              E+LA  +G+   E+    +  D G+DSLL++ +  R  EE  +++  S   ++PT+ +
Sbjct  4     RELLAEVLGVPAEEIDPDTDLFDLGLDSLLAVELIARLEEEFGVEIPPSDLFEHPTLAE  62



Lambda      K        H        a         alpha
   0.317    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2694667870


Query= TCONS_00018788

Length=1231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  298     3e-93
CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          159     1e-43
CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  133     7e-37
CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflat...  128     1e-33


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 298 bits (764),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 106/255 (42%), Positives = 138/255 (54%), Gaps = 9/255 (4%)

Query  258  SKIAIIGMSGRFPEADGIEAFWDLLYKGLDVHKKVPPERWDVDAHVDLTGTKRNTSKVPY  317
              +AI+GM  RFP  +  E FW+ L +G D   ++P +RWD D   D            +
Sbjct  1    EPVAIVGMGCRFPGGNDPEEFWENLLEGRDGISEIPADRWDPDKLYDPPSRIAGKIYTKW  60

Query  318  GCWINEPGLFDARFFNMSPREALQADPAQRLALLSAYEALEMAGFVPNSSPSTQRDRVGI  377
            G  +++   FD  FF +SPREA + DP QRL L +A+EALE AG  P+S   +   R G+
Sbjct  61   GG-LDDIFDFDPLFFGISPREAERMDPQQRLLLEAAWEALEDAGITPDSLDGS---RTGV  116

Query  378  FMGMTSDDYREI----NSGQDIDTY-FIPGGNRAFTPGRINYYFKFSGPSVSVDTACSSS  432
            F+G    DY  +      G       F  G   +   GRI+Y+    GPSV+VDTACSSS
Sbjct  117  FIGSGIGDYAALLLLDEDGGPRRGSPFAVGTMPSVIAGRISYFLGLRGPSVTVDTACSSS  176

Query  433  LAAIHLACNAIWRNDCDTAISGGVNLLTNPDNHAGLDRGHFLSRTGNCNTFDDGADGYCR  492
            L AIH A  +I   + D A++GGVNLL  P   AG      LS  G C  FD  ADG+ R
Sbjct  177  LVAIHAAVQSIRSGEADVALAGGVNLLLTPLGFAGFSAAGMLSPDGPCKAFDPFADGFVR  236

Query  493  ADGVGTIVLKRLEDA  507
             +GVG +VLKRL DA
Sbjct  237  GEGVGAVVLKRLSDA  251


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 159 bits (405),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 101/330 (31%), Positives = 150/330 (45%), Gaps = 22/330 (7%)

Query  794   FVFTGQGAQYTGMGKQLYEDCATFRSTIHRLD-CIAQSQGFPSILPLIDGSMPVEELSPV  852
             FVF+GQG+Q+ GMG QL +    F + I R D       GF S+  ++  + P   L   
Sbjct  2     FVFSGQGSQWAGMGMQLLKTSPAFAAVIDRADEAFKPQYGF-SVSDVLR-NNPEGTLDGT  59

Query  853   -VTQLGTTCLQMALVDYWKGLGVTPAFVLGHSLGDYAALNSAGVLSTSDTIYLCGRRAQL  911
                Q     +Q+AL    +  GV P  V+GHSLG+YAA   AG LS  + +     R++L
Sbjct  60    QFVQPALFAMQIALAALLQSYGVRPDAVVGHSLGEYAAAVVAGALSPEEALLAAVLRSRL  119

Query  912   LTQQCQMGTHAMLAVKAAVSEIQHLLDPDVHAVACINGPTETVISGLSGRIDELAQQCSS  971
             + Q    G   M AV+ +  E++     DV   A +N P   VISG    + EL ++ S 
Sbjct  120   MMQ--LAGPGGMAAVELSAEEVEQRWPDDV-VGAVVNSPRSVVISGPQEAVRELVERVSK  176

Query  972   QNLKSTKLKVPFAFHSAQVDPILESFEESAQGVIFHEPAVPFVSALNGEVITESNYSVLG  1031
             + + +    V +A HS Q+D I  +   +   +    P VPF+S+ +   I  S+   L 
Sbjct  177   EGVGALVENVNYAVHSPQMDAIAPALLSALADIAPRTPRVPFISSTS---IDPSDQRTLS  233

Query  1032  PTYMVKHCREAVNFLGALEATRHAKLMDDATL-WVEVGSHPICSGMIKSTF-----GPQA  1085
               Y V++ R  V F    EA   A   +   L ++E+  HP+    +  T      G  A
Sbjct  234   AEYWVRNLRSPVRF---AEAILSA--AEPGPLVFIEISPHPLLLAALIDTLKSASDGKVA  288

Query  1086  TTVPSLRRD-DDPWKILSNSLSTLHLAGVE  1114
             T V +L RD  D        L+  HL G  
Sbjct  289   TLVGTLIRDQTDFLVTFLYILAVAHLTGSA  318


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 133 bits (336),  Expect = 7e-37, Method: Composition-based stats.
 Identities = 46/121 (38%), Positives = 66/121 (55%), Gaps = 3/121 (2%)

Query  515  LGVINAAYTNHSAEAVSITRPHVGAQAFIFNKLLNDTNTNPHEIGYVEMHGTGTQAGDAV  574
              VI  +  NH      +T P+   QA    + L D   +P ++ YVE HGTGT  GD +
Sbjct  1    YAVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDPEDVDYVEAHGTGTPLGDPI  60

Query  575  EMQSVLDVFAPDYRRGPANSLYLGSAKSNIGHGESASGVTSLVKVLLMLKQNMIPPHCGI  634
            E +++  VF    R+ P   L +GS KSNIGH E A+G   L+KV+L L+  +IPP   +
Sbjct  61   EAEALKRVFGSGARKQP---LAIGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTLNL  117

Query  635  K  635
            +
Sbjct  118  E  118


>CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflatoxin biosynthesis. 
 SAT is the N-terminal starter unit:ACP transacylase 
of the aflatoxin biosynthesis pathway. SAT selects the 
hexanoyl starter unit from a pair of specialized fungal fatty 
acid synthase subunits (HexA/HexB) and transfers it onto the 
polyketide synthase A acyl-carrier protein to prime polyketide 
chain elongation. The family is found in association with 
pfam02801, pfam00109, pfam00550, pfam00975, pfam00698.
Length=239

 Score = 128 bits (323),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 50/125 (40%), Positives = 75/125 (60%), Gaps = 0/125 (0%)

Query  2    LSCTAVSSCKNVGELLPLAVEIVRLTIHLGLCVMRVREMVDSTESSSGSWSILVSEINEA  61
            L+  AVS  +++ EL+PLAVE VR+   LGL V RV + ++ + SS GSWS++V  ++E 
Sbjct  115  LAAAAVSCSRSLSELVPLAVEAVRIAFRLGLLVQRVADRLEGSSSSPGSWSLVVPGLSEE  174

Query  62   DATSLIGNFVKKRGIPPSSQPYISAVGSKGLTISAPPEILDNFIEEGLPKEYKHFKAPGV  121
            +A   +  F + +GIPP+S+PYISAV    +TIS PP  L+  +     K+        +
Sbjct  175  EAEKALEQFNESKGIPPASRPYISAVSPSSVTISGPPSTLELLLSSSPAKKSLPKTPLPI  234

Query  122  SGPYH  126
              PYH
Sbjct  235  YAPYH  239



Lambda      K        H        a         alpha
   0.318    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1583333892


Query= TCONS_00013413

Length=888
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459979 pfam00884, Sulfatase, Sulfatase                            93.6    3e-21


>CDD:459979 pfam00884, Sulfatase, Sulfatase.  
Length=298

 Score = 93.6 bits (233),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 69/292 (24%), Positives = 109/292 (37%), Gaps = 40/292 (14%)

Query  472  RKAFGGISARNAFTTGTYTLKSLVGTVCGVTPL---VTDFNREYKHHIYQPCMPHVLNAL  528
            R A  G+   N ++ GT T  S    + G+ P                 +P +P +L   
Sbjct  31   RLAEEGLLFSNFYSGGTLTAPSRFALLTGLPPHNFGSYVSTPVGLPR-TEPSLPDLLKRA  89

Query  529  ---TRQIDMANRTDDFTSWPWHSKWMQSVTEGYDKQNELTPRLGFKDILAKEQLESPSAK  585
               T  I             WH  W       Y+ Q+     LGF     +         
Sbjct  90   GYNTGAIG-----------KWHLGW-------YNNQS--PCNLGFDKFFGRNTGSD-LYA  128

Query  586  HWPVQSKEINYYGYPDTELREYFRDAIDDAERERKRLFITHLTGTTHHPWGMPN---NSY  642
              P      +  G  D  L +   + +D    ++    + H  G+ H P   P+     Y
Sbjct  129  DPPDVPYNCSGGGVSDEALLDEALEFLD--NNDKPFFLVLHTLGS-HGPPYYPDRYPEKY  185

Query  643  QHFMGDKNFKAKDDLNKYLNTIGFIDNWLAEIMDILTEKGVADETLLVMAGDHGLSLPND  702
              F      +    LN Y NT+ + D+ +  ++D L E G+ D TL+V   DHG SL   
Sbjct  186  ATFKPSSCSEE-QLLNSYDNTLLYTDDAIGRVLDKLEENGLLDNTLVVYTSDHGESLGEG  244

Query  703  GGV---TPYDNPHIGSFQVP-IVFAHPNLPPVEITSPVIS-DQIVPTILDLL  749
            GG      YDN   G ++VP ++++       + +  ++S   + PTILDL 
Sbjct  245  GGYLHGGKYDNAPEGGYRVPLLIWSPGGKAKGQKSEALVSHVDLFPTILDLA  296



Lambda      K        H        a         alpha
   0.322    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1138362602


Query= TCONS_00013417

Length=888
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459979 pfam00884, Sulfatase, Sulfatase                            93.6    3e-21


>CDD:459979 pfam00884, Sulfatase, Sulfatase.  
Length=298

 Score = 93.6 bits (233),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 69/292 (24%), Positives = 109/292 (37%), Gaps = 40/292 (14%)

Query  472  RKAFGGISARNAFTTGTYTLKSLVGTVCGVTPL---VTDFNREYKHHIYQPCMPHVLNAL  528
            R A  G+   N ++ GT T  S    + G+ P                 +P +P +L   
Sbjct  31   RLAEEGLLFSNFYSGGTLTAPSRFALLTGLPPHNFGSYVSTPVGLPR-TEPSLPDLLKRA  89

Query  529  ---TRQIDMANRTDDFTSWPWHSKWMQSVTEGYDKQNELTPRLGFKDILAKEQLESPSAK  585
               T  I             WH  W       Y+ Q+     LGF     +         
Sbjct  90   GYNTGAIG-----------KWHLGW-------YNNQS--PCNLGFDKFFGRNTGSD-LYA  128

Query  586  HWPVQSKEINYYGYPDTELREYFRDAIDDAERERKRLFITHLTGTTHHPWGMPN---NSY  642
              P      +  G  D  L +   + +D    ++    + H  G+ H P   P+     Y
Sbjct  129  DPPDVPYNCSGGGVSDEALLDEALEFLD--NNDKPFFLVLHTLGS-HGPPYYPDRYPEKY  185

Query  643  QHFMGDKNFKAKDDLNKYLNTIGFIDNWLAEIMDILTEKGVADETLLVMAGDHGLSLPND  702
              F      +    LN Y NT+ + D+ +  ++D L E G+ D TL+V   DHG SL   
Sbjct  186  ATFKPSSCSEE-QLLNSYDNTLLYTDDAIGRVLDKLEENGLLDNTLVVYTSDHGESLGEG  244

Query  703  GGV---TPYDNPHIGSFQVP-IVFAHPNLPPVEITSPVIS-DQIVPTILDLL  749
            GG      YDN   G ++VP ++++       + +  ++S   + PTILDL 
Sbjct  245  GGYLHGGKYDNAPEGGYRVPLLIWSPGGKAKGQKSEALVSHVDLFPTILDLA  296



Lambda      K        H        a         alpha
   0.322    0.138    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1138362602


Query= TCONS_00013414

Length=220
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  231     2e-78


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 231 bits (591),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 98/190 (52%), Positives = 119/190 (63%), Gaps = 25/190 (13%)

Query  31   YTDPATGIIFDTWTVPTSQTAGGLTFGVALPSTALTTDATEFIGYLVCPLADCKKKKKQC  90
            YTDP TGI F  WT     + GG TFG+ALP  A TTDA EFIG LV PL          
Sbjct  1    YTDPDTGITFQRWT----DSTGGFTFGIALPEDA-TTDADEFIGQLVAPLT---------  46

Query  91   ASTDATKTGWCGISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS  150
                    GW G+SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI 
Sbjct  47   -------VGWAGVSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIP  99

Query  151  -SAVNATHYTLLFRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQ  209
             ++VN+TH+TL FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  
Sbjct  100  GTSVNSTHFTLTFRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFG  156

Query  210  QHDAQGIWVA  219
            QHD  G + A
Sbjct  157  QHDNFGQFGA  166



Lambda      K        H        a         alpha
   0.318    0.130    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00013416

Length=888
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459979 pfam00884, Sulfatase, Sulfatase                            93.6    3e-21


>CDD:459979 pfam00884, Sulfatase, Sulfatase.  
Length=298

 Score = 93.6 bits (233),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 69/292 (24%), Positives = 109/292 (37%), Gaps = 40/292 (14%)

Query  472  RKAFGGISARNAFTTGTYTLKSLVGTVCGVTPL---VTDFNREYKHHIYQPCMPHVLNAL  528
            R A  G+   N ++ GT T  S    + G+ P                 +P +P +L   
Sbjct  31   RLAEEGLLFSNFYSGGTLTAPSRFALLTGLPPHNFGSYVSTPVGLPR-TEPSLPDLLKRA  89

Query  529  ---TRQIDMANRTDDFTSWPWHSKWMQSVTEGYDKQNELTPRLGFKDILAKEQLESPSAK  585
               T  I             WH  W       Y+ Q+     LGF     +         
Sbjct  90   GYNTGAIG-----------KWHLGW-------YNNQS--PCNLGFDKFFGRNTGSD-LYA  128

Query  586  HWPVQSKEINYYGYPDTELREYFRDAIDDAERERKRLFITHLTGTTHHPWGMPN---NSY  642
              P      +  G  D  L +   + +D    ++    + H  G+ H P   P+     Y
Sbjct  129  DPPDVPYNCSGGGVSDEALLDEALEFLD--NNDKPFFLVLHTLGS-HGPPYYPDRYPEKY  185

Query  643  QHFMGDKNFKAKDDLNKYLNTIGFIDNWLAEIMDILTEKGVADETLLVMAGDHGLSLPND  702
              F      +    LN Y NT+ + D+ +  ++D L E G+ D TL+V   DHG SL   
Sbjct  186  ATFKPSSCSEE-QLLNSYDNTLLYTDDAIGRVLDKLEENGLLDNTLVVYTSDHGESLGEG  244

Query  703  GGV---TPYDNPHIGSFQVP-IVFAHPNLPPVEITSPVIS-DQIVPTILDLL  749
            GG      YDN   G ++VP ++++       + +  ++S   + PTILDL 
Sbjct  245  GGYLHGGKYDNAPEGGYRVPLLIWSPGGKAKGQKSEALVSHVDLFPTILDLA  296



Lambda      K        H        a         alpha
   0.322    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1138362602


Query= TCONS_00013415

Length=888
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459979 pfam00884, Sulfatase, Sulfatase                            93.6    3e-21


>CDD:459979 pfam00884, Sulfatase, Sulfatase.  
Length=298

 Score = 93.6 bits (233),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 69/292 (24%), Positives = 109/292 (37%), Gaps = 40/292 (14%)

Query  472  RKAFGGISARNAFTTGTYTLKSLVGTVCGVTPL---VTDFNREYKHHIYQPCMPHVLNAL  528
            R A  G+   N ++ GT T  S    + G+ P                 +P +P +L   
Sbjct  31   RLAEEGLLFSNFYSGGTLTAPSRFALLTGLPPHNFGSYVSTPVGLPR-TEPSLPDLLKRA  89

Query  529  ---TRQIDMANRTDDFTSWPWHSKWMQSVTEGYDKQNELTPRLGFKDILAKEQLESPSAK  585
               T  I             WH  W       Y+ Q+     LGF     +         
Sbjct  90   GYNTGAIG-----------KWHLGW-------YNNQS--PCNLGFDKFFGRNTGSD-LYA  128

Query  586  HWPVQSKEINYYGYPDTELREYFRDAIDDAERERKRLFITHLTGTTHHPWGMPN---NSY  642
              P      +  G  D  L +   + +D    ++    + H  G+ H P   P+     Y
Sbjct  129  DPPDVPYNCSGGGVSDEALLDEALEFLD--NNDKPFFLVLHTLGS-HGPPYYPDRYPEKY  185

Query  643  QHFMGDKNFKAKDDLNKYLNTIGFIDNWLAEIMDILTEKGVADETLLVMAGDHGLSLPND  702
              F      +    LN Y NT+ + D+ +  ++D L E G+ D TL+V   DHG SL   
Sbjct  186  ATFKPSSCSEE-QLLNSYDNTLLYTDDAIGRVLDKLEENGLLDNTLVVYTSDHGESLGEG  244

Query  703  GGV---TPYDNPHIGSFQVP-IVFAHPNLPPVEITSPVIS-DQIVPTILDLL  749
            GG      YDN   G ++VP ++++       + +  ++S   + PTILDL 
Sbjct  245  GGYLHGGKYDNAPEGGYRVPLLIWSPGGKAKGQKSEALVSHVDLFPTILDLA  296



Lambda      K        H        a         alpha
   0.322    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1138362602


Query= TCONS_00018789

Length=791
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  239     6e-75
CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  103     2e-26
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  75.4    8e-16


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 239 bits (611),  Expect = 6e-75, Method: Composition-based stats.
 Identities = 97/181 (54%), Positives = 118/181 (65%), Gaps = 13/181 (7%)

Query  31   YTDPATGIIFDTWTVPTSQTAGGLTFGVALPSTALTTDATEFIGYLQCASTDATKTGWCG  90
            YTDP TGI F  WT     + GG TFG+ALP  A TTDA EFIG L    T     GW G
Sbjct  1    YTDPDTGITFQRWT----DSTGGFTFGIALPEDA-TTDADEFIGQLVAPLT----VGWAG  51

Query  91   ISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS-SAVNATHYTLL  149
            +SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI  ++VN+TH+TL 
Sbjct  52   VSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIPGTSVNSTHFTLT  111

Query  150  FRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQQHDAQGIWVAKL  209
            FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  QHD  G + A L
Sbjct  112  FRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFGQHDNFGQFGADL  168

Query  210  D  210
             
Sbjct  169  A  169


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 103 bits (259),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 17/147 (12%)

Query  648  TSRGRMTITA--NLDTVVSTLPYLRDQHDVDAVIQGLVNLQNALK----------GVGLN  695
             SRGR+T+++       V    YL D  D+ A+   L   +  L             G  
Sbjct  2    RSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGVELTPGPV  61

Query  696  WTYPAPNITAEEFVNTMEITASTRRANHWLGTCKMGTDDGRTGGTAVVDTNTKVYGTDNL  755
                   +T+++ +    I A+   + H +GTC+MG D       AVVD + +V+G DNL
Sbjct  62   PEVSDAAVTSDDELLAY-IRAAASTSYHPMGTCRMGADPD----DAVVDPDLRVHGVDNL  116

Query  756  FVVDGSIFPGMVTSNPSAYIAIAAERA  782
             VVD S+FP   + NP+  I   AERA
Sbjct  117  RVVDASVFPSSPSGNPTLTIYALAERA  143


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 75.4 bits (186),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  333  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  388
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  389  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  447
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  448  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  506
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  507  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  554
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.317    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1014240944


Query= TCONS_00018791

Length=780
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459979 pfam00884, Sulfatase, Sulfatase                            93.6    2e-21


>CDD:459979 pfam00884, Sulfatase, Sulfatase.  
Length=298

 Score = 93.6 bits (233),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 69/292 (24%), Positives = 109/292 (37%), Gaps = 40/292 (14%)

Query  364  RKAFGGISARNAFTTGTYTLKSLVGTVCGVTPL---VTDFNREYKHHIYQPCMPHVLNAL  420
            R A  G+   N ++ GT T  S    + G+ P                 +P +P +L   
Sbjct  31   RLAEEGLLFSNFYSGGTLTAPSRFALLTGLPPHNFGSYVSTPVGLPR-TEPSLPDLLKRA  89

Query  421  ---TRQIDMANRTDDFTSWPWHSKWMQSVTEGYDKQNELTPRLGFKDILAKEQLESPSAK  477
               T  I             WH  W       Y+ Q+     LGF     +         
Sbjct  90   GYNTGAIG-----------KWHLGW-------YNNQS--PCNLGFDKFFGRNTGSD-LYA  128

Query  478  HWPVQSKEINYYGYPDTELREYFRDAIDDAERERKRLFITHLTGTTHHPWGMPN---NSY  534
              P      +  G  D  L +   + +D    ++    + H  G+ H P   P+     Y
Sbjct  129  DPPDVPYNCSGGGVSDEALLDEALEFLD--NNDKPFFLVLHTLGS-HGPPYYPDRYPEKY  185

Query  535  QHFMGDKNFKAKDDLNKYLNTIGFIDNWLAEIMDILTEKGVADETLLVMAGDHGLSLPND  594
              F      +    LN Y NT+ + D+ +  ++D L E G+ D TL+V   DHG SL   
Sbjct  186  ATFKPSSCSEE-QLLNSYDNTLLYTDDAIGRVLDKLEENGLLDNTLVVYTSDHGESLGEG  244

Query  595  GGV---TPYDNPHIGSFQVP-IVFAHPNLPPVEITSPVIS-DQIVPTILDLL  641
            GG      YDN   G ++VP ++++       + +  ++S   + PTILDL 
Sbjct  245  GGYLHGGKYDNAPEGGYRVPLLIWSPGGKAKGQKSEALVSHVDLFPTILDLA  296



Lambda      K        H        a         alpha
   0.320    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 998234272


Query= TCONS_00018790

Length=792
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459979 pfam00884, Sulfatase, Sulfatase                            93.6    2e-21


>CDD:459979 pfam00884, Sulfatase, Sulfatase.  
Length=298

 Score = 93.6 bits (233),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 69/292 (24%), Positives = 109/292 (37%), Gaps = 40/292 (14%)

Query  376  RKAFGGISARNAFTTGTYTLKSLVGTVCGVTPL---VTDFNREYKHHIYQPCMPHVLNAL  432
            R A  G+   N ++ GT T  S    + G+ P                 +P +P +L   
Sbjct  31   RLAEEGLLFSNFYSGGTLTAPSRFALLTGLPPHNFGSYVSTPVGLPR-TEPSLPDLLKRA  89

Query  433  ---TRQIDMANRTDDFTSWPWHSKWMQSVTEGYDKQNELTPRLGFKDILAKEQLESPSAK  489
               T  I             WH  W       Y+ Q+     LGF     +         
Sbjct  90   GYNTGAIG-----------KWHLGW-------YNNQS--PCNLGFDKFFGRNTGSD-LYA  128

Query  490  HWPVQSKEINYYGYPDTELREYFRDAIDDAERERKRLFITHLTGTTHHPWGMPN---NSY  546
              P      +  G  D  L +   + +D    ++    + H  G+ H P   P+     Y
Sbjct  129  DPPDVPYNCSGGGVSDEALLDEALEFLD--NNDKPFFLVLHTLGS-HGPPYYPDRYPEKY  185

Query  547  QHFMGDKNFKAKDDLNKYLNTIGFIDNWLAEIMDILTEKGVADETLLVMAGDHGLSLPND  606
              F      +    LN Y NT+ + D+ +  ++D L E G+ D TL+V   DHG SL   
Sbjct  186  ATFKPSSCSEE-QLLNSYDNTLLYTDDAIGRVLDKLEENGLLDNTLVVYTSDHGESLGEG  244

Query  607  GGV---TPYDNPHIGSFQVP-IVFAHPNLPPVEITSPVIS-DQIVPTILDLL  653
            GG      YDN   G ++VP ++++       + +  ++S   + PTILDL 
Sbjct  245  GGYLHGGKYDNAPEGGYRVPLLIWSPGGKAKGQKSEALVSHVDLFPTILDLA  296



Lambda      K        H        a         alpha
   0.320    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1015696096


Query= TCONS_00013418

Length=652
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459979 pfam00884, Sulfatase, Sulfatase                            92.1    5e-21


>CDD:459979 pfam00884, Sulfatase, Sulfatase.  
Length=298

 Score = 92.1 bits (229),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 107/289 (37%), Gaps = 34/289 (12%)

Query  236  RKAFGGISARNAFTTGTYTLKSLVGTVCGVTPL---VTDFNREYKHHIYQPCMPHVLNAL  292
            R A  G+   N ++ GT T  S    + G+ P                 +P +P +L   
Sbjct  31   RLAEEGLLFSNFYSGGTLTAPSRFALLTGLPPHNFGSYVSTPVGLPR-TEPSLPDLLKRA  89

Query  293  TRQIDMANRTDDFTSWPWHSKWMQSVTEGYDKQNELTPRLGFKDILAKEQLESPSAKHWP  352
                             WH  W       Y+ Q+     LGF     +           P
Sbjct  90   GYNTGAIG--------KWHLGW-------YNNQS--PCNLGFDKFFGRNTGSD-LYADPP  131

Query  353  VQSKEINYYGYPDTELREYFRDAIDDAERERKRLFITHLTGTTHHPWGMPN---NSYQHF  409
                  +  G  D  L +   + +D    ++    + H  G+ H P   P+     Y  F
Sbjct  132  DVPYNCSGGGVSDEALLDEALEFLD--NNDKPFFLVLHTLGS-HGPPYYPDRYPEKYATF  188

Query  410  MGDKNFKAKDDLNKYLNTIGFIDNWLAEIMDILTEKGVADETLLVMAGDHGLSLPNDGGV  469
                  +    LN Y NT+ + D+ +  ++D L E G+ D TL+V   DHG SL   GG 
Sbjct  189  KPSSCSEE-QLLNSYDNTLLYTDDAIGRVLDKLEENGLLDNTLVVYTSDHGESLGEGGGY  247

Query  470  ---TPYDNPHIGSFQVP-IVFAHPNLPPVEITSPVIS-DQIVPTILDLL  513
                 YDN   G ++VP ++++       + +  ++S   + PTILDL 
Sbjct  248  LHGGKYDNAPEGGYRVPLLIWSPGGKAKGQKSEALVSHVDLFPTILDLA  296



Lambda      K        H        a         alpha
   0.319    0.138    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0744    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00013419

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  186     1e-56
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  75.0    8e-16


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 186 bits (475),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 68/128 (53%), Positives = 87/128 (68%), Gaps = 4/128 (3%)

Query  31   TKTGWCGISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS-SAVN  89
               GW G+SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI  ++VN
Sbjct  45   LTVGWAGVSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIPGTSVN  104

Query  90   ATHYTLLFRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQQHDAQ  149
            +TH+TL FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  QHD  
Sbjct  105  STHFTLTFRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFGQHDNF  161

Query  150  GIWVAKLD  157
            G + A L 
Sbjct  162  GQFGADLA  169


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 75.0 bits (185),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  280  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  335
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  336  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  394
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  395  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  453
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  454  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  501
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.317    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 738247432


Query= TCONS_00018792

Length=551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  185     2e-56
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  75.0    6e-16


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 185 bits (472),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 68/128 (53%), Positives = 87/128 (68%), Gaps = 4/128 (3%)

Query  31   TKTGWCGISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS-SAVN  89
               GW G+SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI  ++VN
Sbjct  45   LTVGWAGVSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIPGTSVN  104

Query  90   ATHYTLLFRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQQHDAQ  149
            +TH+TL FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  QHD  
Sbjct  105  STHFTLTFRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFGQHDNF  161

Query  150  GIWVAKLD  157
            G + A L 
Sbjct  162  GQFGADLA  169


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 75.0 bits (185),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  280  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  335
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  336  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  394
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  395  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  453
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  454  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  501
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.316    0.133    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685942452


Query= TCONS_00018794

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  186     1e-56
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  75.0    8e-16


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 186 bits (475),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 68/128 (53%), Positives = 87/128 (68%), Gaps = 4/128 (3%)

Query  31   TKTGWCGISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS-SAVN  89
               GW G+SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI  ++VN
Sbjct  45   LTVGWAGVSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIPGTSVN  104

Query  90   ATHYTLLFRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQQHDAQ  149
            +TH+TL FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  QHD  
Sbjct  105  STHFTLTFRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFGQHDNF  161

Query  150  GIWVAKLD  157
            G + A L 
Sbjct  162  GQFGADLA  169


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 75.0 bits (185),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  280  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  335
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  336  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  394
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  395  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  453
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  454  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  501
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.317    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 738247432


Query= TCONS_00018793

Length=695
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  185     2e-55
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  74.6    1e-15


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 185 bits (472),  Expect = 2e-55, Method: Composition-based stats.
 Identities = 68/128 (53%), Positives = 87/128 (68%), Gaps = 4/128 (3%)

Query  31   TKTGWCGISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS-SAVN  89
               GW G+SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI  ++VN
Sbjct  45   LTVGWAGVSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIPGTSVN  104

Query  90   ATHYTLLFRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQQHDAQ  149
            +TH+TL FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  QHD  
Sbjct  105  STHFTLTFRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFGQHDNF  161

Query  150  GIWVAKLD  157
            G + A L 
Sbjct  162  GQFGADLA  169


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 74.6 bits (184),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  280  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  335
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  336  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  394
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  395  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  453
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  454  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  501
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.316    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 887823580


Query= TCONS_00013420

Length=641
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  239     2e-76
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  75.4    6e-16


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 239 bits (613),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 97/181 (54%), Positives = 118/181 (65%), Gaps = 13/181 (7%)

Query  31   YTDPATGIIFDTWTVPTSQTAGGLTFGVALPSTALTTDATEFIGYLQCASTDATKTGWCG  90
            YTDP TGI F  WT     + GG TFG+ALP  A TTDA EFIG L    T     GW G
Sbjct  1    YTDPDTGITFQRWT----DSTGGFTFGIALPEDA-TTDADEFIGQLVAPLT----VGWAG  51

Query  91   ISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS-SAVNATHYTLL  149
            +SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI  ++VN+TH+TL 
Sbjct  52   VSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIPGTSVNSTHFTLT  111

Query  150  FRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQQHDAQGIWVAKL  209
            FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  QHD  G + A L
Sbjct  112  FRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFGQHDNFGQFGADL  168

Query  210  D  210
             
Sbjct  169  A  169


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 75.4 bits (186),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  333  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  388
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  389  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  447
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  448  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  506
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  507  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  554
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.317    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 808184920


Query= TCONS_00018796

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  240     3e-77
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  74.6    1e-15


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 240 bits (614),  Expect = 3e-77, Method: Composition-based stats.
 Identities = 99/193 (51%), Positives = 120/193 (62%), Gaps = 25/193 (13%)

Query  31   YTDPATGIIFDTWTVPTSQTAGGLTFGVALPSTALTTDATEFIGYLVCPLADCKKKKKQC  90
            YTDP TGI F  WT     + GG TFG+ALP  A TTDA EFIG LV PL          
Sbjct  1    YTDPDTGITFQRWT----DSTGGFTFGIALPEDA-TTDADEFIGQLVAPLT---------  46

Query  91   ASTDATKTGWCGISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS  150
                    GW G+SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI 
Sbjct  47   -------VGWAGVSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIP  99

Query  151  -SAVNATHYTLLFRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQ  209
             ++VN+TH+TL FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  
Sbjct  100  GTSVNSTHFTLTFRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFG  156

Query  210  QHDAQGIWVAKLD  222
            QHD  G + A L 
Sbjct  157  QHDNFGQFGADLA  169


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 74.6 bits (184),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  345  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  400
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  401  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  459
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  460  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  518
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  519  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  566
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.317    0.133    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 723303152


Query= TCONS_00018795

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  239     2e-76
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  75.4    5e-16


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 239 bits (611),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 99/193 (51%), Positives = 120/193 (62%), Gaps = 25/193 (13%)

Query  31   YTDPATGIIFDTWTVPTSQTAGGLTFGVALPSTALTTDATEFIGYLVCPLADCKKKKKQC  90
            YTDP TGI F  WT     + GG TFG+ALP  A TTDA EFIG LV PL          
Sbjct  1    YTDPDTGITFQRWT----DSTGGFTFGIALPEDA-TTDADEFIGQLVAPLT---------  46

Query  91   ASTDATKTGWCGISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS  150
                    GW G+SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI 
Sbjct  47   -------VGWAGVSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIP  99

Query  151  -SAVNATHYTLLFRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQ  209
             ++VN+TH+TL FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  
Sbjct  100  GTSVNSTHFTLTFRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFG  156

Query  210  QHDAQGIWVAKLD  222
            QHD  G + A L 
Sbjct  157  QHDNFGQFGADLA  169


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 75.4 bits (186),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  345  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  400
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  401  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  459
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  460  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  518
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  519  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  566
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.317    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 783080272


Query= TCONS_00013421

Length=664
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  186     5e-56
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  75.0    8e-16


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 186 bits (474),  Expect = 5e-56, Method: Composition-based stats.
 Identities = 68/128 (53%), Positives = 87/128 (68%), Gaps = 4/128 (3%)

Query  31   TKTGWCGISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS-SAVN  89
               GW G+SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI  ++VN
Sbjct  45   LTVGWAGVSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIPGTSVN  104

Query  90   ATHYTLLFRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQQHDAQ  149
            +TH+TL FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  QHD  
Sbjct  105  STHFTLTFRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFGQHDNF  161

Query  150  GIWVAKLD  157
            G + A L 
Sbjct  162  GQFGADLA  169


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 75.0 bits (185),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  280  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  335
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  336  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  394
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  395  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  453
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  454  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  501
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.317    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 842105090


Query= TCONS_00018797

Length=670
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  164     6e-48
CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  87.5    6e-21
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  74.6    1e-15


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 164 bits (418),  Expect = 6e-48, Method: Composition-based stats.
 Identities = 62/115 (54%), Positives = 80/115 (70%), Gaps = 4/115 (3%)

Query  1    MTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS-SAVNATHYTLLFRCQGC  59
            MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI  ++VN+TH+TL FRCQGC
Sbjct  58   MTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIPGTSVNSTHFTLTFRCQGC  117

Query  60   LAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQQHDAQGIWVAKLD  114
             +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  QHD  G + A L 
Sbjct  118  TSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFGQHDNFGQFGADLA  169


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 87.5 bits (217),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 39/131 (30%), Positives = 59/131 (45%), Gaps = 17/131 (13%)

Query  552  TSRGRMTITA--NLDTVVSTLPYLRDQHDVDAVIQGLVNLQNALK----------GVGLN  599
             SRGR+T+++       V    YL D  D+ A+   L   +  L             G  
Sbjct  2    RSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGVELTPGPV  61

Query  600  WTYPAPNITAEEFVNTMEITASTRRANHWLGTCKMGTDDGRTGGTAVVDTNTKVYGTDNL  659
                   +T+++ +    I A+   + H +GTC+MG D       AVVD + +V+G DNL
Sbjct  62   PEVSDAAVTSDDELLAY-IRAAASTSYHPMGTCRMGADPD----DAVVDPDLRVHGVDNL  116

Query  660  FVVDGSIFPGM  670
             VVD S+FP  
Sbjct  117  RVVDASVFPSS  127


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 74.6 bits (184),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  237  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  292
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  293  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  351
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  352  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  410
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  411  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  458
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.317    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 850953830


Query= TCONS_00018799

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  240     3e-77
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  74.6    1e-15


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 240 bits (614),  Expect = 3e-77, Method: Composition-based stats.
 Identities = 99/193 (51%), Positives = 120/193 (62%), Gaps = 25/193 (13%)

Query  31   YTDPATGIIFDTWTVPTSQTAGGLTFGVALPSTALTTDATEFIGYLVCPLADCKKKKKQC  90
            YTDP TGI F  WT     + GG TFG+ALP  A TTDA EFIG LV PL          
Sbjct  1    YTDPDTGITFQRWT----DSTGGFTFGIALPEDA-TTDADEFIGQLVAPLT---------  46

Query  91   ASTDATKTGWCGISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS  150
                    GW G+SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI 
Sbjct  47   -------VGWAGVSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIP  99

Query  151  -SAVNATHYTLLFRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQ  209
             ++VN+TH+TL FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  
Sbjct  100  GTSVNSTHFTLTFRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFG  156

Query  210  QHDAQGIWVAKLD  222
            QHD  G + A L 
Sbjct  157  QHDNFGQFGADLA  169


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 74.6 bits (184),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  345  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  400
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  401  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  459
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  460  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  518
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  519  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  566
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.317    0.133    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 723303152


Query= TCONS_00018798

Length=749
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  240     7e-76
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  75.4    7e-16


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 240 bits (615),  Expect = 7e-76, Method: Composition-based stats.
 Identities = 99/193 (51%), Positives = 120/193 (62%), Gaps = 25/193 (13%)

Query  31   YTDPATGIIFDTWTVPTSQTAGGLTFGVALPSTALTTDATEFIGYLVCPLADCKKKKKQC  90
            YTDP TGI F  WT     + GG TFG+ALP  A TTDA EFIG LV PL          
Sbjct  1    YTDPDTGITFQRWT----DSTGGFTFGIALPEDA-TTDADEFIGQLVAPLT---------  46

Query  91   ASTDATKTGWCGISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS  150
                    GW G+SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI 
Sbjct  47   -------VGWAGVSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIP  99

Query  151  -SAVNATHYTLLFRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQ  209
             ++VN+TH+TL FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  
Sbjct  100  GTSVNSTHFTLTFRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFG  156

Query  210  QHDAQGIWVAKLD  222
            QHD  G + A L 
Sbjct  157  QHDNFGQFGADLA  169


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 75.4 bits (186),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  345  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  400
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  401  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  459
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  460  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  518
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  519  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  566
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.318    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 953124560


Query= TCONS_00013422

Length=783
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  239     4e-75
CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  93.6    6e-23
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  75.4    8e-16


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 239 bits (612),  Expect = 4e-75, Method: Composition-based stats.
 Identities = 99/193 (51%), Positives = 120/193 (62%), Gaps = 25/193 (13%)

Query  31   YTDPATGIIFDTWTVPTSQTAGGLTFGVALPSTALTTDATEFIGYLVCPLADCKKKKKQC  90
            YTDP TGI F  WT     + GG TFG+ALP  A TTDA EFIG LV PL          
Sbjct  1    YTDPDTGITFQRWT----DSTGGFTFGIALPEDA-TTDADEFIGQLVAPLT---------  46

Query  91   ASTDATKTGWCGISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS  150
                    GW G+SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI 
Sbjct  47   -------VGWAGVSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIP  99

Query  151  -SAVNATHYTLLFRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQ  209
             ++VN+TH+TL FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  
Sbjct  100  GTSVNSTHFTLTFRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFG  156

Query  210  QHDAQGIWVAKLD  222
            QHD  G + A L 
Sbjct  157  QHDNFGQFGADLA  169


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 93.6 bits (233),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 62/136 (46%), Gaps = 17/136 (13%)

Query  660  TSRGRMTITA--NLDTVVSTLPYLRDQHDVDAVIQGLVNLQNALK----------GVGLN  707
             SRGR+T+++       V    YL D  D+ A+   L   +  L             G  
Sbjct  2    RSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGVELTPGPV  61

Query  708  WTYPAPNITAEEFVNTMEITASTRRANHWLGTCKMGTDDGRTGGTAVVDTNTKVYGTDNL  767
                   +T+++ +    I A+   + H +GTC+MG D       AVVD + +V+G DNL
Sbjct  62   PEVSDAAVTSDDELLAY-IRAAASTSYHPMGTCRMGADPD----DAVVDPDLRVHGVDNL  116

Query  768  FVVDGSIFPGMVTSNP  783
             VVD S+FP   + NP
Sbjct  117  RVVDASVFPSSPSGNP  132


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 75.4 bits (186),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  345  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  400
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  401  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  459
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  460  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  518
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  519  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  566
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.317    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1002599728


Query= TCONS_00018800

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  186     3e-57
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  73.9    2e-15


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 186 bits (475),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 68/128 (53%), Positives = 87/128 (68%), Gaps = 4/128 (3%)

Query  31   TKTGWCGISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS-SAVN  89
               GW G+SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI  ++VN
Sbjct  45   LTVGWAGVSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIPGTSVN  104

Query  90   ATHYTLLFRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQQHDAQ  149
            +TH+TL FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  QHD  
Sbjct  105  STHFTLTFRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFGQHDNF  161

Query  150  GIWVAKLD  157
            G + A L 
Sbjct  162  GQFGADLA  169


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 73.9 bits (182),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  280  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  335
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  336  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  394
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  395  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  453
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  454  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  501
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.316    0.133    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 635907720


Query= TCONS_00018801

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  185     3e-55
CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  104     1e-26
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  75.0    9e-16


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 185 bits (472),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 68/128 (53%), Positives = 87/128 (68%), Gaps = 4/128 (3%)

Query  31   TKTGWCGISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS-SAVN  89
               GW G+SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI  ++VN
Sbjct  45   LTVGWAGVSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIPGTSVN  104

Query  90   ATHYTLLFRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQQHDAQ  149
            +TH+TL FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  QHD  
Sbjct  105  STHFTLTFRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFGQHDNF  161

Query  150  GIWVAKLD  157
            G + A L 
Sbjct  162  GQFGADLA  169


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 104 bits (260),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 17/147 (12%)

Query  597  TSRGRMTITA--NLDTVVSTLPYLRDQHDVDAVIQGLVNLQNALK----------GVGLN  644
             SRGR+T+++       V    YL D  D+ A+   L   +  L             G  
Sbjct  2    RSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGVELTPGPV  61

Query  645  WTYPAPNITAEEFVNTMEITASTRRANHWLGTCKMGTDDGRTGGTAVVDTNTKVYGTDNL  704
                   +T+++ +    I A+   + H +GTC+MG D       AVVD + +V+G DNL
Sbjct  62   PEVSDAAVTSDDELLAY-IRAAASTSYHPMGTCRMGADPD----DAVVDPDLRVHGVDNL  116

Query  705  FVVDGSIFPGMVTSNPSAYIAIAAERA  731
             VVD S+FP   + NP+  I   AERA
Sbjct  117  RVVDASVFPSSPSGNPTLTIYALAERA  143


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 75.0 bits (185),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  280  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  335
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  336  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  394
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  395  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  453
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  454  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  501
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.317    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00013424

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  101     2e-26


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 101 bits (254),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 17/147 (12%)

Query  280  TSRGRMTITA--NLDTVVSTLPYLRDQHDVDAVIQGLVNLQNALK----------GVGLN  327
             SRGR+T+++       V    YL D  D+ A+   L   +  L             G  
Sbjct  2    RSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGVELTPGPV  61

Query  328  WTYPAPNITAEEFVNTMEITASTRRANHWLGTCKMGTDDGRTGGTAVVDTNTKVYGTDNL  387
                   +T+++ +    I A+   + H +GTC+MG D       AVVD + +V+G DNL
Sbjct  62   PEVSDAAVTSDDELLAY-IRAAASTSYHPMGTCRMGADPD----DAVVDPDLRVHGVDNL  116

Query  388  FVVDGSIFPGMVTSNPSAYIAIAAERA  414
             VVD S+FP   + NP+  I   AERA
Sbjct  117  RVVDASVFPSSPSGNPTLTIYALAERA  143



Lambda      K        H        a         alpha
   0.317    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00013423

Length=805
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  239     4e-75
CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  104     1e-26
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  75.4    7e-16


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 239 bits (613),  Expect = 4e-75, Method: Composition-based stats.
 Identities = 99/193 (51%), Positives = 120/193 (62%), Gaps = 25/193 (13%)

Query  31   YTDPATGIIFDTWTVPTSQTAGGLTFGVALPSTALTTDATEFIGYLVCPLADCKKKKKQC  90
            YTDP TGI F  WT     + GG TFG+ALP  A TTDA EFIG LV PL          
Sbjct  1    YTDPDTGITFQRWT----DSTGGFTFGIALPEDA-TTDADEFIGQLVAPLT---------  46

Query  91   ASTDATKTGWCGISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS  150
                    GW G+SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI 
Sbjct  47   -------VGWAGVSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIP  99

Query  151  -SAVNATHYTLLFRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQ  209
             ++VN+TH+TL FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  
Sbjct  100  GTSVNSTHFTLTFRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFG  156

Query  210  QHDAQGIWVAKLD  222
            QHD  G + A L 
Sbjct  157  QHDNFGQFGADLA  169


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 104 bits (260),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 17/147 (12%)

Query  662  TSRGRMTITA--NLDTVVSTLPYLRDQHDVDAVIQGLVNLQNALK----------GVGLN  709
             SRGR+T+++       V    YL D  D+ A+   L   +  L             G  
Sbjct  2    RSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGVELTPGPV  61

Query  710  WTYPAPNITAEEFVNTMEITASTRRANHWLGTCKMGTDDGRTGGTAVVDTNTKVYGTDNL  769
                   +T+++ +    I A+   + H +GTC+MG D       AVVD + +V+G DNL
Sbjct  62   PEVSDAAVTSDDELLAY-IRAAASTSYHPMGTCRMGADPD----DAVVDPDLRVHGVDNL  116

Query  770  FVVDGSIFPGMVTSNPSAYIAIAAERA  796
             VVD S+FP   + NP+  I   AERA
Sbjct  117  RVVDASVFPSSPSGNPTLTIYALAERA  143


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 75.4 bits (186),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  345  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  400
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  401  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  459
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  460  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  518
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  519  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  566
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.317    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0731    0.140     1.90     42.6     43.6 

Effective search space used: 1034613072


Query= TCONS_00018802

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  186     3e-57
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  73.9    2e-15


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 186 bits (475),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 68/128 (53%), Positives = 87/128 (68%), Gaps = 4/128 (3%)

Query  31   TKTGWCGISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS-SAVN  89
               GW G+SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI  ++VN
Sbjct  45   LTVGWAGVSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIPGTSVN  104

Query  90   ATHYTLLFRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQQHDAQ  149
            +TH+TL FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  QHD  
Sbjct  105  STHFTLTFRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFGQHDNF  161

Query  150  GIWVAKLD  157
            G + A L 
Sbjct  162  GQFGADLA  169


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 73.9 bits (182),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  280  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  335
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  336  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  394
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  395  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  453
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  454  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  501
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.316    0.133    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 635907720


Query= TCONS_00013425

Length=721
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  247     1e-78
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  74.2    2e-15


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 247 bits (633),  Expect = 1e-78, Method: Composition-based stats.
 Identities = 97/181 (54%), Positives = 118/181 (65%), Gaps = 13/181 (7%)

Query  31   YTDPATGIIFDTWTVPTSQTAGGLTFGVALPSTALTTDATEFIGYLQCASTDATKTGWCG  90
            YTDP TGI F  WT     + GG TFG+ALP  A TTDA EFIG L    T     GW G
Sbjct  1    YTDPDTGITFQRWT----DSTGGFTFGIALPEDA-TTDADEFIGQLVAPLT----VGWAG  51

Query  91   ISLKGGMTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS-SAVNATHYTLL  149
            +SL G MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI  ++VN+TH+TL 
Sbjct  52   VSLGGSMTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIPGTSVNSTHFTLT  111

Query  150  FRCQGCLAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQQHDAQGIWVAKL  209
            FRCQGC +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  QHD  G + A L
Sbjct  112  FRCQGCTSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFGQHDNFGQFGADL  168

Query  210  D  210
             
Sbjct  169  A  169


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 74.2 bits (183),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  333  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  388
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  389  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  447
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  448  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  506
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  507  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  554
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.318    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 912380304


Query= TCONS_00013426

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  165     5e-49
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  74.6    8e-16


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 165 bits (420),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 62/115 (54%), Positives = 80/115 (70%), Gaps = 4/115 (3%)

Query  1    MTSNLLLMAWPYEGEILTSFRFSSGYAMPDVYAGNATLTQIS-SAVNATHYTLLFRCQGC  59
            MT+NLLL+AWP  G ++TSFR+++GY  P VY G+ATLTQI  ++VN+TH+TL FRCQGC
Sbjct  58   MTNNLLLVAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIPGTSVNSTHFTLTFRCQGC  117

Query  60   LAWNHNGVTGSAPTSAKQLVLGWAQAVAAPGNPSCPGEITLQQHDAQGIWVAKLD  114
             +W+  G +GSA  S    VLGWAQ+  AP +PS P   T  QHD  G + A L 
Sbjct  118  TSWDGGGTSGSA--SGGNAVLGWAQSTTAPTDPSSPDS-TFGQHDNFGQFGADLA  169


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 74.6 bits (184),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 82/228 (36%), Gaps = 40/228 (18%)

Query  237  AGCVLGGGTAVNAALWWKPYPLD---WTYNF-PAGWQAEDMVSLTNRVFNRIPWTVRPSA  292
            AG  +GGG++VN +   +        W   F   GW  +D +   ++V   +   V    
Sbjct  23   AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLG--VTTKG  80

Query  293  DGKIYMQQGYSVIAGGLQAAGWQELTLNDNPSAKNHT-YGHTPYMFSHGERGGPLATYLV  351
                      +++    +  G+    +  N +  ++  +         G +     T+L 
Sbjct  81   IE--ESPLNQALLKAAEEL-GYPVEAVPRNSNGCHYCGFCGLGCPT--GAKQSTARTWLR  135

Query  352  SASERNNFKLWMNTTVKRVV-RTADGHVTGVEVEPFLDGGYEGVVNVTAKTGRVVLSAGT  410
             A ERN  ++      ++++     G   GVE      GG      +TA    VV++AG 
Sbjct  136  PALERN-LRILTGAKAEKIIILGRGGRAVGVEARD-GGGG--IKRLITAA-KEVVVAAGA  190

Query  411  FGSARILMRSGIGPSDQLEIVKSSSDGPTMIDESAWINLPVGMNLVDH  458
              +  +L+RSG+G +                        PVG NL  H
Sbjct  191  LNTPPLLLRSGLGKNPH----------------------PVGKNLQLH  216



Lambda      K        H        a         alpha
   0.317    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684357832


Query= TCONS_00018803

Length=167
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  99.0    1e-27


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 99.0 bits (247),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 17/147 (12%)

Query  24   TSRGRMTITA--NLDTVVSTLPYLRDQHDVDAVIQGLVNLQNALK----------GVGLN  71
             SRGR+T+++       V    YL D  D+ A+   L   +  L             G  
Sbjct  2    RSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGVELTPGPV  61

Query  72   WTYPAPNITAEEFVNTMEITASTRRANHWLGTCKMGTDDGRTGGTAVVDTNTKVYGTDNL  131
                   +T+++ +    I A+   + H +GTC+MG D       AVVD + +V+G DNL
Sbjct  62   PEVSDAAVTSDDELLAY-IRAAASTSYHPMGTCRMGADPD----DAVVDPDLRVHGVDNL  116

Query  132  FVVDGSIFPGMVTSNPSAYIAIAAERA  158
             VVD S+FP   + NP+  I   AERA
Sbjct  117  RVVDASVFPSSPSGNPTLTIYALAERA  143



Lambda      K        H        a         alpha
   0.316    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00013430

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428720 pfam06011, TRP, Transient receptor potential (TRP) ion...  506     2e-178
CDD:434037 pfam14558, TRP_N, ML-like domain. This domain is dista...  73.7    3e-16 


>CDD:428720 pfam06011, TRP, Transient receptor potential (TRP) ion channel. 
 This family of proteins are transient receptor potential 
(TRP) ion channels. They are essential for cellular viability 
and are involved in cell growth and cell wall synthesis. 
The genes for these proteins are homologous to polycystic kidney 
disease related ion channel genes.
Length=424

 Score = 506 bits (1306),  Expect = 2e-178, Method: Composition-based stats.
 Identities = 219/426 (51%), Positives = 299/426 (70%), Gaps = 10/426 (2%)

Query  82   VGWTTAIISGLGLAASAFTSTQGHSNAAAHLAGNTLALFGFVQAQAMVGMLAVHMPPMVQ  141
            V W TA I+GL L ASA  S  G+SNAAAH+A + L+LFG+ Q+QAMVGML+V+ PP+  
Sbjct  1    VKWVTAGIAGLALLASAVLSGLGNSNAAAHVAASVLSLFGYFQSQAMVGMLSVNYPPIAA  60

Query  142  SWTQNFQWSMGLIRVGAVQKIGTWYQRSTGGVPSTLLMQLTTTSVNVLKKRAVAE-----  196
            +WTQNF WSMGLIRVG +QKI  WY ++TGG P+ +L  L+T SV+V  KR++A      
Sbjct  61   AWTQNFAWSMGLIRVGFMQKIINWYVQATGGTPTLVLTSLSTLSVSV--KRSLAARDKRG  118

Query  197  --ESSTNVIVRGIKRVGLKAAIEDTNLFLTSVIIFTFFALVVMIIVLLMKVVCAVLAKKG  254
               + + +++RGI+RV  +A IE TN F+T ++ F  F  VV++ +LL K +  +LA+ G
Sbjct  119  NPVTGSPLVLRGIQRVAYRAGIESTNAFMTGLLFFLIFIAVVVVGILLFKAILELLARFG  178

Query  255  RTGPA-WGHFLGEWDVVARGVLYRLVFIGFAPLSIFCLWEFTQRDSSAEIVVAAIIPGSI  313
               P  +  F   W  + +G L RL+ IGF  L+I CLWEFTQRDS+A +V+A I+    
Sbjct  179  WMKPDRFLEFRKHWWGILKGTLLRLILIGFPQLTILCLWEFTQRDSAAAVVLAVILLALF  238

Query  314  SGALVWAAVKIILLMQKSISMHRNPAYVLYSDTTCLNRWGFLYVQYRATAASFILVVIGY  373
            +G L WAA +II + +KS  +H+NPAY+LYSD   LN++GFLYVQYRAT   F + ++ Y
Sbjct  239  TGLLGWAAFRIIRIARKSKRLHKNPAYLLYSDKKFLNKYGFLYVQYRATRYWFFVPLLVY  298

Query  374  LFVKALFISLGQTVPIVQTVALLVLEGLMLIGVSVVRPWMDKRTNTYNIAIAAVNFLNAI  433
            +FVK LFI+  Q    VQ + LL++E L LI +  +RP+MDKRTN +NIAI+ VN LNAI
Sbjct  299  IFVKGLFIAFAQGSGKVQVIGLLIIELLYLILLIWLRPYMDKRTNVFNIAISVVNVLNAI  358

Query  434  FVLFFSGVFDQPGIVSGVMGVCFFVINAALTLVLILLVIYASVMAVISKSPDTHYKPMQD  493
             +LFFS  F QP IV+ VMGV FFVINAA TLVL++L+I  +++A+ SK+PD  Y+PM+D
Sbjct  359  LLLFFSEEFGQPRIVTTVMGVVFFVINAAFTLVLLILIIVNAIIALFSKNPDRRYRPMKD  418

Query  494  DRGSFI  499
            DR SF+
Sbjct  419  DRRSFL  424


>CDD:434037 pfam14558, TRP_N, ML-like domain.  This domain is distantly similar 
to pfam02221 and conserves its pattern of conserved cysteines. 
This suggests that this domain may be involved in 
lipid binding.
Length=137

 Score = 73.7 bits (182),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 33/48 (69%), Gaps = 0/48 (0%)

Query  30   STDAASNRAGIAYTVPDLDATVRIYVNSSATGESITCVEARLSNDKTV  77
              D  S   GIAYT+PDLDATVR+ + S+ TG  I CV+A L+N KTV
Sbjct  90   PADYVSQIPGIAYTIPDLDATVRVRIYSTGTGTEIACVQATLTNGKTV  137



Lambda      K        H        a         alpha
   0.325    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00013429

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428720 pfam06011, TRP, Transient receptor potential (TRP) ion...  506     2e-178
CDD:434037 pfam14558, TRP_N, ML-like domain. This domain is dista...  73.7    3e-16 


>CDD:428720 pfam06011, TRP, Transient receptor potential (TRP) ion channel. 
 This family of proteins are transient receptor potential 
(TRP) ion channels. They are essential for cellular viability 
and are involved in cell growth and cell wall synthesis. 
The genes for these proteins are homologous to polycystic kidney 
disease related ion channel genes.
Length=424

 Score = 506 bits (1306),  Expect = 2e-178, Method: Composition-based stats.
 Identities = 219/426 (51%), Positives = 299/426 (70%), Gaps = 10/426 (2%)

Query  82   VGWTTAIISGLGLAASAFTSTQGHSNAAAHLAGNTLALFGFVQAQAMVGMLAVHMPPMVQ  141
            V W TA I+GL L ASA  S  G+SNAAAH+A + L+LFG+ Q+QAMVGML+V+ PP+  
Sbjct  1    VKWVTAGIAGLALLASAVLSGLGNSNAAAHVAASVLSLFGYFQSQAMVGMLSVNYPPIAA  60

Query  142  SWTQNFQWSMGLIRVGAVQKIGTWYQRSTGGVPSTLLMQLTTTSVNVLKKRAVAE-----  196
            +WTQNF WSMGLIRVG +QKI  WY ++TGG P+ +L  L+T SV+V  KR++A      
Sbjct  61   AWTQNFAWSMGLIRVGFMQKIINWYVQATGGTPTLVLTSLSTLSVSV--KRSLAARDKRG  118

Query  197  --ESSTNVIVRGIKRVGLKAAIEDTNLFLTSVIIFTFFALVVMIIVLLMKVVCAVLAKKG  254
               + + +++RGI+RV  +A IE TN F+T ++ F  F  VV++ +LL K +  +LA+ G
Sbjct  119  NPVTGSPLVLRGIQRVAYRAGIESTNAFMTGLLFFLIFIAVVVVGILLFKAILELLARFG  178

Query  255  RTGPA-WGHFLGEWDVVARGVLYRLVFIGFAPLSIFCLWEFTQRDSSAEIVVAAIIPGSI  313
               P  +  F   W  + +G L RL+ IGF  L+I CLWEFTQRDS+A +V+A I+    
Sbjct  179  WMKPDRFLEFRKHWWGILKGTLLRLILIGFPQLTILCLWEFTQRDSAAAVVLAVILLALF  238

Query  314  SGALVWAAVKIILLMQKSISMHRNPAYVLYSDTTCLNRWGFLYVQYRATAASFILVVIGY  373
            +G L WAA +II + +KS  +H+NPAY+LYSD   LN++GFLYVQYRAT   F + ++ Y
Sbjct  239  TGLLGWAAFRIIRIARKSKRLHKNPAYLLYSDKKFLNKYGFLYVQYRATRYWFFVPLLVY  298

Query  374  LFVKALFISLGQTVPIVQTVALLVLEGLMLIGVSVVRPWMDKRTNTYNIAIAAVNFLNAI  433
            +FVK LFI+  Q    VQ + LL++E L LI +  +RP+MDKRTN +NIAI+ VN LNAI
Sbjct  299  IFVKGLFIAFAQGSGKVQVIGLLIIELLYLILLIWLRPYMDKRTNVFNIAISVVNVLNAI  358

Query  434  FVLFFSGVFDQPGIVSGVMGVCFFVINAALTLVLILLVIYASVMAVISKSPDTHYKPMQD  493
             +LFFS  F QP IV+ VMGV FFVINAA TLVL++L+I  +++A+ SK+PD  Y+PM+D
Sbjct  359  LLLFFSEEFGQPRIVTTVMGVVFFVINAAFTLVLLILIIVNAIIALFSKNPDRRYRPMKD  418

Query  494  DRGSFI  499
            DR SF+
Sbjct  419  DRRSFL  424


>CDD:434037 pfam14558, TRP_N, ML-like domain.  This domain is distantly similar 
to pfam02221 and conserves its pattern of conserved cysteines. 
This suggests that this domain may be involved in 
lipid binding.
Length=137

 Score = 73.7 bits (182),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 33/48 (69%), Gaps = 0/48 (0%)

Query  30   STDAASNRAGIAYTVPDLDATVRIYVNSSATGESITCVEARLSNDKTV  77
              D  S   GIAYT+PDLDATVR+ + S+ TG  I CV+A L+N KTV
Sbjct  90   PADYVSQIPGIAYTIPDLDATVRVRIYSTGTGTEIACVQATLTNGKTV  137



Lambda      K        H        a         alpha
   0.325    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00018804

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428720 pfam06011, TRP, Transient receptor potential (TRP) ion...  506     2e-178
CDD:434037 pfam14558, TRP_N, ML-like domain. This domain is dista...  73.7    3e-16 


>CDD:428720 pfam06011, TRP, Transient receptor potential (TRP) ion channel. 
 This family of proteins are transient receptor potential 
(TRP) ion channels. They are essential for cellular viability 
and are involved in cell growth and cell wall synthesis. 
The genes for these proteins are homologous to polycystic kidney 
disease related ion channel genes.
Length=424

 Score = 506 bits (1306),  Expect = 2e-178, Method: Composition-based stats.
 Identities = 219/426 (51%), Positives = 299/426 (70%), Gaps = 10/426 (2%)

Query  82   VGWTTAIISGLGLAASAFTSTQGHSNAAAHLAGNTLALFGFVQAQAMVGMLAVHMPPMVQ  141
            V W TA I+GL L ASA  S  G+SNAAAH+A + L+LFG+ Q+QAMVGML+V+ PP+  
Sbjct  1    VKWVTAGIAGLALLASAVLSGLGNSNAAAHVAASVLSLFGYFQSQAMVGMLSVNYPPIAA  60

Query  142  SWTQNFQWSMGLIRVGAVQKIGTWYQRSTGGVPSTLLMQLTTTSVNVLKKRAVAE-----  196
            +WTQNF WSMGLIRVG +QKI  WY ++TGG P+ +L  L+T SV+V  KR++A      
Sbjct  61   AWTQNFAWSMGLIRVGFMQKIINWYVQATGGTPTLVLTSLSTLSVSV--KRSLAARDKRG  118

Query  197  --ESSTNVIVRGIKRVGLKAAIEDTNLFLTSVIIFTFFALVVMIIVLLMKVVCAVLAKKG  254
               + + +++RGI+RV  +A IE TN F+T ++ F  F  VV++ +LL K +  +LA+ G
Sbjct  119  NPVTGSPLVLRGIQRVAYRAGIESTNAFMTGLLFFLIFIAVVVVGILLFKAILELLARFG  178

Query  255  RTGPA-WGHFLGEWDVVARGVLYRLVFIGFAPLSIFCLWEFTQRDSSAEIVVAAIIPGSI  313
               P  +  F   W  + +G L RL+ IGF  L+I CLWEFTQRDS+A +V+A I+    
Sbjct  179  WMKPDRFLEFRKHWWGILKGTLLRLILIGFPQLTILCLWEFTQRDSAAAVVLAVILLALF  238

Query  314  SGALVWAAVKIILLMQKSISMHRNPAYVLYSDTTCLNRWGFLYVQYRATAASFILVVIGY  373
            +G L WAA +II + +KS  +H+NPAY+LYSD   LN++GFLYVQYRAT   F + ++ Y
Sbjct  239  TGLLGWAAFRIIRIARKSKRLHKNPAYLLYSDKKFLNKYGFLYVQYRATRYWFFVPLLVY  298

Query  374  LFVKALFISLGQTVPIVQTVALLVLEGLMLIGVSVVRPWMDKRTNTYNIAIAAVNFLNAI  433
            +FVK LFI+  Q    VQ + LL++E L LI +  +RP+MDKRTN +NIAI+ VN LNAI
Sbjct  299  IFVKGLFIAFAQGSGKVQVIGLLIIELLYLILLIWLRPYMDKRTNVFNIAISVVNVLNAI  358

Query  434  FVLFFSGVFDQPGIVSGVMGVCFFVINAALTLVLILLVIYASVMAVISKSPDTHYKPMQD  493
             +LFFS  F QP IV+ VMGV FFVINAA TLVL++L+I  +++A+ SK+PD  Y+PM+D
Sbjct  359  LLLFFSEEFGQPRIVTTVMGVVFFVINAAFTLVLLILIIVNAIIALFSKNPDRRYRPMKD  418

Query  494  DRGSFI  499
            DR SF+
Sbjct  419  DRRSFL  424


>CDD:434037 pfam14558, TRP_N, ML-like domain.  This domain is distantly similar 
to pfam02221 and conserves its pattern of conserved cysteines. 
This suggests that this domain may be involved in 
lipid binding.
Length=137

 Score = 73.7 bits (182),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 33/48 (69%), Gaps = 0/48 (0%)

Query  30   STDAASNRAGIAYTVPDLDATVRIYVNSSATGESITCVEARLSNDKTV  77
              D  S   GIAYT+PDLDATVR+ + S+ TG  I CV+A L+N KTV
Sbjct  90   PADYVSQIPGIAYTIPDLDATVRVRIYSTGTGTEIACVQATLTNGKTV  137



Lambda      K        H        a         alpha
   0.325    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00013431

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428720 pfam06011, TRP, Transient receptor potential (TRP) ion...  506     2e-178
CDD:434037 pfam14558, TRP_N, ML-like domain. This domain is dista...  73.7    3e-16 


>CDD:428720 pfam06011, TRP, Transient receptor potential (TRP) ion channel. 
 This family of proteins are transient receptor potential 
(TRP) ion channels. They are essential for cellular viability 
and are involved in cell growth and cell wall synthesis. 
The genes for these proteins are homologous to polycystic kidney 
disease related ion channel genes.
Length=424

 Score = 506 bits (1306),  Expect = 2e-178, Method: Composition-based stats.
 Identities = 219/426 (51%), Positives = 299/426 (70%), Gaps = 10/426 (2%)

Query  82   VGWTTAIISGLGLAASAFTSTQGHSNAAAHLAGNTLALFGFVQAQAMVGMLAVHMPPMVQ  141
            V W TA I+GL L ASA  S  G+SNAAAH+A + L+LFG+ Q+QAMVGML+V+ PP+  
Sbjct  1    VKWVTAGIAGLALLASAVLSGLGNSNAAAHVAASVLSLFGYFQSQAMVGMLSVNYPPIAA  60

Query  142  SWTQNFQWSMGLIRVGAVQKIGTWYQRSTGGVPSTLLMQLTTTSVNVLKKRAVAE-----  196
            +WTQNF WSMGLIRVG +QKI  WY ++TGG P+ +L  L+T SV+V  KR++A      
Sbjct  61   AWTQNFAWSMGLIRVGFMQKIINWYVQATGGTPTLVLTSLSTLSVSV--KRSLAARDKRG  118

Query  197  --ESSTNVIVRGIKRVGLKAAIEDTNLFLTSVIIFTFFALVVMIIVLLMKVVCAVLAKKG  254
               + + +++RGI+RV  +A IE TN F+T ++ F  F  VV++ +LL K +  +LA+ G
Sbjct  119  NPVTGSPLVLRGIQRVAYRAGIESTNAFMTGLLFFLIFIAVVVVGILLFKAILELLARFG  178

Query  255  RTGPA-WGHFLGEWDVVARGVLYRLVFIGFAPLSIFCLWEFTQRDSSAEIVVAAIIPGSI  313
               P  +  F   W  + +G L RL+ IGF  L+I CLWEFTQRDS+A +V+A I+    
Sbjct  179  WMKPDRFLEFRKHWWGILKGTLLRLILIGFPQLTILCLWEFTQRDSAAAVVLAVILLALF  238

Query  314  SGALVWAAVKIILLMQKSISMHRNPAYVLYSDTTCLNRWGFLYVQYRATAASFILVVIGY  373
            +G L WAA +II + +KS  +H+NPAY+LYSD   LN++GFLYVQYRAT   F + ++ Y
Sbjct  239  TGLLGWAAFRIIRIARKSKRLHKNPAYLLYSDKKFLNKYGFLYVQYRATRYWFFVPLLVY  298

Query  374  LFVKALFISLGQTVPIVQTVALLVLEGLMLIGVSVVRPWMDKRTNTYNIAIAAVNFLNAI  433
            +FVK LFI+  Q    VQ + LL++E L LI +  +RP+MDKRTN +NIAI+ VN LNAI
Sbjct  299  IFVKGLFIAFAQGSGKVQVIGLLIIELLYLILLIWLRPYMDKRTNVFNIAISVVNVLNAI  358

Query  434  FVLFFSGVFDQPGIVSGVMGVCFFVINAALTLVLILLVIYASVMAVISKSPDTHYKPMQD  493
             +LFFS  F QP IV+ VMGV FFVINAA TLVL++L+I  +++A+ SK+PD  Y+PM+D
Sbjct  359  LLLFFSEEFGQPRIVTTVMGVVFFVINAAFTLVLLILIIVNAIIALFSKNPDRRYRPMKD  418

Query  494  DRGSFI  499
            DR SF+
Sbjct  419  DRRSFL  424


>CDD:434037 pfam14558, TRP_N, ML-like domain.  This domain is distantly similar 
to pfam02221 and conserves its pattern of conserved cysteines. 
This suggests that this domain may be involved in 
lipid binding.
Length=137

 Score = 73.7 bits (182),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 33/48 (69%), Gaps = 0/48 (0%)

Query  30   STDAASNRAGIAYTVPDLDATVRIYVNSSATGESITCVEARLSNDKTV  77
              D  S   GIAYT+PDLDATVR+ + S+ TG  I CV+A L+N KTV
Sbjct  90   PADYVSQIPGIAYTIPDLDATVRVRIYSTGTGTEIACVQATLTNGKTV  137



Lambda      K        H        a         alpha
   0.325    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00013432

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  198     8e-62


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 198 bits (507),  Expect = 8e-62, Method: Composition-based stats.
 Identities = 111/338 (33%), Positives = 166/338 (49%), Gaps = 28/338 (8%)

Query  1    MATGGIAVLLSSTPHQFPGLKTMGKIVYILNLVLFLGISACLIIHFLAKSSALNDSFQEP  60
            M TGG+A+LL   P+   GL+T+G I++ILNLVLFL +    ++ F+    A+    + P
Sbjct  11   MGTGGLALLLHHLPYG-RGLRTIGLILFILNLVLFLLLLLLYLLRFILYPEAVRAELRHP  69

Query  61   NESYFIGTCLLALATLILGAENYGNDACGPWLQVALRIVFW-IYVVLSTIQAIWHNWYLY  119
             ES F+GT  +  AT+I G         GPWL     +++W I V L+   A+   + L+
Sbjct  70   VESLFLGTFPMGFATIINGLVLVPV--PGPWLVTLAWVLWWWIGVALALAFAVGVPFLLF  127

Query  120  HIRMARRQPFALVRLLPLFPAMLTGTMASVLASHQPRHHALPILIGGTTFQGFGFIMSLV  179
                          LLP+ P M+   + ++LA+       LPIL+      G G  ++LV
Sbjct  128  TRHHLLEAMTP-AWLLPVVPLMVVAALGALLAAL-----LLPILVVSYLLWGLGLFLALV  181

Query  180  IYSDYFSRLHKDGLPKPSDRPEMFIAVGPWSFTALALLGMAEAAVKQFPGQSVIFYADAS  239
            I + Y  RL   GLP    RP +FI +GP    ALALL +  AA    P           
Sbjct  182  ILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILP-----------  230

Query  240  TSQPVSVPTGDIALVLAALVAIFVWTMAAFCLCIAVLSVLAQCRVFGSTGALRMSLPYWS  299
                ++   G+I  V+A L+A+F+W    +   IA LSVL+  R  G    L  +L +W+
Sbjct  231  ---ALTALAGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGG----LPFNLGWWA  283

Query  300  MVFPNTGFVLATIRVGQVLQSSAILWVGSGLTMAQVAI  337
              FP   F LATI +G+ L S     +G+ L++  V +
Sbjct  284  FTFPLGAFALATIELGKALDSPFFRVLGTILSVLLVLV  321



Lambda      K        H        a         alpha
   0.328    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00013433

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00013434

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00018806

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.503    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00013437

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00013438

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00018807

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00018808

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00013439

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00013440

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00018809

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00013441

Length=384


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00013442

Length=20


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 66022480


Query= TCONS_00013443

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            71.7    2e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 71.7 bits (176),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 50/283 (18%), Positives = 97/283 (34%), Gaps = 21/283 (7%)

Query  62   VALLMTFVALMNGTIITVAHEAINERFGISDAVFPHSYWPVTSWALGGVVFSLLILPIME  121
            + L     AL    +       + E  GIS          +T ++LG  +   L   + +
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEI---GLLLTLFSLGYALAQPLAGRLSD  57

Query  122  DFGIRRTFLLTHLLFILFVIPQGVAQNFETLVITRFFAGGCVTVIGNSAASVIGNVWETE  181
             FG RR  L+  LLF L ++    A +   L++ R   G     +  +A ++I + W   
Sbjct  58   RFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIAD-WFPP  116

Query  182  KQRSKPVSLWIWAYLAGSSVGPVIGASVFQFRSWRWISYLQMIWLGVLFPINFLVFRESR  241
            ++R + + L    +  G+++GP++G  +     WR    +  I   +   +  L      
Sbjct  117  EERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPE  176

Query  242  AAIILHQRAKRLRAKGQNAYTRQELDAKPLLQLLATSIRRPLTMLVTEYVVFFSTLWSAF  301
            +         RL                          R P+  L+   ++F    +   
Sbjct  177  SKRPKPAEEARLSLIVAWKALL----------------RDPVLWLLLALLLFGFAFFGLL  220

Query  302  TVGTLYLFTQSVEQVFVGLYDWGPVTAGYVQAAIVIGEVAGWF  344
            T   LY     +  +  GL   G          +++G ++   
Sbjct  221  TYLPLYQEVLGLSALLAGLL-LGLGGLLGAIGRLLLGRLSDRL  262



Lambda      K        H        a         alpha
   0.326    0.139    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00013444

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               76.3    1e-18


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 76.3 bits (188),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query  156  LSLAAVMGHQSLVRYFLAQGVDPEIRDRTGFTALGHAAKAGHADVVETLLEWGVRRDNVG  215
            L LAA  G+  LV+  L  G D  ++D+ G TAL  AAK GH ++V+ LLE      N+ 
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE--HADVNLK  58

Query  216  EDGETALCWAARENHAVVVEVLLRHGAD  243
            ++G TAL +AAR  H  +V++LL  GAD
Sbjct  59   DNGRTALHYAARSGHLEIVKLLLEKGAD  86


 Score = 72.5 bits (178),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 47/91 (52%), Gaps = 0/91 (0%)

Query  92   LHFALGRGSLECVLLLIERGADLQQYESTGSRALYPAISSGSHALVEFLVNRGCNPLGCC  151
            LH A   G+LE V LL+E GAD    +  G  AL+ A  +G   +V+ L+      L   
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKDN  60

Query  152  GYTALSLAAVMGHQSLVRYFLAQGVDPEIRD  182
            G TAL  AA  GH  +V+  L +G D  ++D
Sbjct  61   GRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 65.1 bits (159),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 48/89 (54%), Gaps = 4/89 (4%)

Query  26   VAAGRGYEGVLKLLLDSGASPNESRQFPRVPLSLAIQYGHDAAVRVLLAREDTTVTLPSA  85
            +AA  G   ++KLLL++GA  N   +  R  L LA + GH   V++LL   D  +     
Sbjct  3    LAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKD---  59

Query  86   PFSQQPLHFALGRGSLECVLLLIERGADL  114
               +  LH+A   G LE V LL+E+GAD+
Sbjct  60   -NGRTALHYAARSGHLEIVKLLLEKGADI  87



Lambda      K        H        a         alpha
   0.319    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00018812

Length=474


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00013445

Length=474


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00013446

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  97.8    2e-22


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 97.8 bits (244),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 72/407 (18%), Positives = 127/407 (31%), Gaps = 58/407 (14%)

Query  127  RTATRGAIFYLITTDI-LGPFGLGYAFATMGWGPGIALYTVFGGLAAYSGYLLWSAFLGL  185
              +   A+F LI   I  G   L YAF  +GW PG+ L  + G ++ Y+ +LL      +
Sbjct  2    TISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKEV  61

Query  186  DSYQFPVRSFGDLGFRLYGRWMRYLFNILQSIQLL-LNVGLIVISNGEALYQVSRS--KL  242
                   +S+GDLG+RL G   R L      + L  + +  ++ + G+ L  +  S    
Sbjct  62   PVTGKRNKSYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFA-GDNLPAIFDSFFDT  120

Query  243  CFIVCCLVWALFGFFI---GQIRTLQKYGWLANCAVWINLIVMFITMGGAANAPPNYAAA  299
            C I       +FG        I  L     L+     +  +                   
Sbjct  121  CPISLVYFIIIFGLIFIPLSFIPNLSALSILS----LLAAVSSLY---------------  161

Query  300  SASAGAVINEALITPVNGVYPPVQTS-GGLPEAGNFVGSLNGAMQAVFAYGGAMVFPEFM  358
                  ++   L      V         G        G+       VFA+ G  V     
Sbjct  162  -----YIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAGTFLAIGIIVFAFEGHAVLLPIQ  216

Query  359  SEMKRPKDFLTAMWA---AQAFIYFWYMFYGLF---MYGYQGQYNVNPSYLGIGSYNIST  412
            +EMK P  F         A       Y+  GL     +G   + N+  +     S  +  
Sbjct  217  NEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLAFGDNVKGNILLNLP--KSAWLID  274

Query  413  AGNVFAMVSAAIAAGLYGNIGLKGMSAAKSFRRCVVAVLTVLVLYNQVFVELLRCPPLTT  472
              N+  ++   ++  L        +   +     ++         +       +   +  
Sbjct  275  IANLLLVLHVILSFPLQ-------LFPIRQIVENLLFRKEAPFGASGKNNPKSKLLRVVI  327

Query  473  RGGKWFWVILVPIYWGIAFALAAGIPNFSGLTSVVAAVCILQFTYSF  519
            R G    +  +         +A  +P F  L S+V A      ++  
Sbjct  328  RSG-LVVITYL---------IAISVPFFGDLLSLVGATSCAPLSFIL  364



Lambda      K        H        a         alpha
   0.324    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 648020248


Query= TCONS_00013448

Length=474


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00013449

Length=474


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00018813

Length=310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  129     6e-37


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 129 bits (327),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 54/171 (32%), Positives = 81/171 (47%), Gaps = 13/171 (8%)

Query  81   IMGASWELLAFVFRILQTRHQDNVPYATAHTILYLLAPLWINAFIYMTLGRLIHFFIPER  140
            I+G   E++ ++ RIL   +  ++       +L LLAP +I A IYMTLGR+I       
Sbjct  2    ILGCILEVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRAL--GE  59

Query  141  RLGGISAKRYGLIFVWLDILAFIVQLAGASITTQREVPTSTIMLGIHIYMGGIGLQELFV  200
             L  +  + Y  IFV  D+L+ ++Q AG  +       +S    G +I + G+  Q  F+
Sbjct  60   SLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAAS-ADSSSEAKTGENIMIAGLAFQVAFL  118

Query  201  LIFGALTIHLHRRMVQMENYGGLDNEKTTRGSVSWRWLFAALYAALILITV  251
             IF  L    HRR+             T R S  W+    ALYAA +LI +
Sbjct  119  GIFIILAADFHRRV----------RRSTLRLSRRWKLFLLALYAASLLILI  159



Lambda      K        H        a         alpha
   0.328    0.141    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 355153814


Query= TCONS_00013450

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  189     2e-59


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 189 bits (482),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 78/223 (35%), Positives = 114/223 (51%), Gaps = 15/223 (7%)

Query  81   IMGASWELLAFVFRILQTRHQDNVPYATAHTILYLLAPLWINAFIYMTLGRLIHFFIPER  140
            I+G   E++ ++ RIL   +  ++       +L LLAP +I A IYMTLGR+I       
Sbjct  2    ILGCILEVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRAL--GE  59

Query  141  RLGGISAKRYGLIFVWLDILAFIVQLAGASITTQREVPTSTIMLGIHIYMGGIGLQELFV  200
             L  +  + Y  IFV  D+L+ ++Q AG  +       +S    G +I + G+  Q  F+
Sbjct  60   SLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAAS-ADSSSEAKTGENIMIAGLAFQVAFL  118

Query  201  LIFGALTIHLHRRMVQMENYGGLDNEKTTRGSVSWRWLFAALYAALILITIRIIFRLCQY  260
             IF  L    HRR+             T R S  W+    ALYAA +LI IR I+R+ + 
Sbjct  119  GIFIILAADFHRRV----------RRSTLRLSRRWKLFLLALYAASLLILIRSIYRVAEL  168

Query  261  ARGTDPTNPVLTQEAYEYVLDATPMFLALLILNVIHPGRVLQG  303
            A+G D    ++T E Y YVLD   M LA+++LNV HPG +  G
Sbjct  169  AQGWD--GYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPG  209



Lambda      K        H        a         alpha
   0.326    0.140    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00018814

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  152     8e-47


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 152 bits (387),  Expect = 8e-47, Method: Composition-based stats.
 Identities = 63/177 (36%), Positives = 89/177 (50%), Gaps = 15/177 (8%)

Query  1    MTLGRLIHFFIPERRLGGISAKRYGLIFVWLDILAFIVQLAGASITTQREVPTSTIMLGI  60
            MTLGR+I        L  +  + Y  IFV  D+L+ ++Q AG  +       +S    G 
Sbjct  48   MTLGRIIRAL--GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAAS-ADSSSEAKTGE  104

Query  61   HIYMGGIGLQELFVLIFGALTIHLHRRMVQMENYGGLDNEKTTRGSVSWRWLFAALYAAL  120
            +I + G+  Q  F+ IF  L    HRR+             T R S  W+    ALYAA 
Sbjct  105  NIMIAGLAFQVAFLGIFIILAADFHRRV----------RRSTLRLSRRWKLFLLALYAAS  154

Query  121  ILITIRIIFRLCQYARGTDPTNPVLTQEAYEYVLDATPMFLALLILNVIHPGRVLQG  177
            +LI IR I+R+ + A+G D    ++T E Y YVLD   M LA+++LNV HPG +  G
Sbjct  155  LLILIRSIYRVAELAQGWD--GYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPG  209



Lambda      K        H        a         alpha
   0.325    0.141    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00013451

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  152     8e-47


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 152 bits (387),  Expect = 8e-47, Method: Composition-based stats.
 Identities = 63/177 (36%), Positives = 89/177 (50%), Gaps = 15/177 (8%)

Query  1    MTLGRLIHFFIPERRLGGISAKRYGLIFVWLDILAFIVQLAGASITTQREVPTSTIMLGI  60
            MTLGR+I        L  +  + Y  IFV  D+L+ ++Q AG  +       +S    G 
Sbjct  48   MTLGRIIRAL--GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAAS-ADSSSEAKTGE  104

Query  61   HIYMGGIGLQELFVLIFGALTIHLHRRMVQMENYGGLDNEKTTRGSVSWRWLFAALYAAL  120
            +I + G+  Q  F+ IF  L    HRR+             T R S  W+    ALYAA 
Sbjct  105  NIMIAGLAFQVAFLGIFIILAADFHRRV----------RRSTLRLSRRWKLFLLALYAAS  154

Query  121  ILITIRIIFRLCQYARGTDPTNPVLTQEAYEYVLDATPMFLALLILNVIHPGRVLQG  177
            +LI IR I+R+ + A+G D    ++T E Y YVLD   M LA+++LNV HPG +  G
Sbjct  155  LLILIRSIYRVAELAQGWD--GYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPG  209



Lambda      K        H        a         alpha
   0.325    0.141    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00013452

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  189     2e-59


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 189 bits (482),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 78/223 (35%), Positives = 114/223 (51%), Gaps = 15/223 (7%)

Query  81   IMGASWELLAFVFRILQTRHQDNVPYATAHTILYLLAPLWINAFIYMTLGRLIHFFIPER  140
            I+G   E++ ++ RIL   +  ++       +L LLAP +I A IYMTLGR+I       
Sbjct  2    ILGCILEVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRAL--GE  59

Query  141  RLGGISAKRYGLIFVWLDILAFIVQLAGASITTQREVPTSTIMLGIHIYMGGIGLQELFV  200
             L  +  + Y  IFV  D+L+ ++Q AG  +       +S    G +I + G+  Q  F+
Sbjct  60   SLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAAS-ADSSSEAKTGENIMIAGLAFQVAFL  118

Query  201  LIFGALTIHLHRRMVQMENYGGLDNEKTTRGSVSWRWLFAALYAALILITIRIIFRLCQY  260
             IF  L    HRR+             T R S  W+    ALYAA +LI IR I+R+ + 
Sbjct  119  GIFIILAADFHRRV----------RRSTLRLSRRWKLFLLALYAASLLILIRSIYRVAEL  168

Query  261  ARGTDPTNPVLTQEAYEYVLDATPMFLALLILNVIHPGRVLQG  303
            A+G D    ++T E Y YVLD   M LA+++LNV HPG +  G
Sbjct  169  AQGWD--GYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPG  209



Lambda      K        H        a         alpha
   0.326    0.140    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00013453

Length=355
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  133     5e-38


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 133 bits (337),  Expect = 5e-38, Method: Composition-based stats.
 Identities = 54/171 (32%), Positives = 81/171 (47%), Gaps = 13/171 (8%)

Query  81   IMGASWELLAFVFRILQTRHQDNVPYATAHTILYLLAPLWINAFIYMTLGRLIHFFIPER  140
            I+G   E++ ++ RIL   +  ++       +L LLAP +I A IYMTLGR+I       
Sbjct  2    ILGCILEVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRAL--GE  59

Query  141  RLGGISAKRYGLIFVWLDILAFIVQLAGASITTQREVPTSTIMLGIHIYMGGIGLQELFV  200
             L  +  + Y  IFV  D+L+ ++Q AG  +       +S    G +I + G+  Q  F+
Sbjct  60   SLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAAS-ADSSSEAKTGENIMIAGLAFQVAFL  118

Query  201  LIFGALTIHLHRRMVQMENYGGLDNEKTTRGSVSWRWLFAALYAALILITV  251
             IF  L    HRR+             T R S  W+    ALYAA +LI +
Sbjct  119  GIFIILAADFHRRV----------RRSTLRLSRRWKLFLLALYAASLLILI  159



Lambda      K        H        a         alpha
   0.325    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00013454

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00013456

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            79.0    9e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 79.0 bits (195),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 68/359 (19%), Positives = 120/359 (33%), Gaps = 38/359 (11%)

Query  2    MTREWNLSQATVQRAVVGNLFTIGSCGIIVVVLAGYFGRMPVLLLFQAVMVGTCAWSAAA  61
            +  +  +S   +   +            +   L+  FGR  VLL+   +          A
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  62   TSFESYMAARIINGLFCSVGQGGALLWIKDLFFFHEHPKVINYIEFFIIMSPYLGPLLTC  121
            +S    +  R++ GL        AL  I D F   E  + +  +     +   LGPLL  
Sbjct  83   SSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGG  142

Query  122  FIVTDVAWRWAFWLCTCMSAVAFLLVFLLDETLFDRKGRQVPRGSYIARLTGVQQAQLWR  181
             + +   WR AF +   +S +A +L+ L       ++ +                     
Sbjct  143  LLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLS-------------  189

Query  182  ERRFLQCAMRPIVAITRIPVLIILIYYLLNFAWVIGVNTTIGIWLSNDYGFSTRGIGYFY  241
                    +    A+ R PVL +L+  LL      G+ T + ++     G S    G   
Sbjct  190  -------LIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQ-EVLGLSALLAGLLL  241

Query  242  FFGIVGVIIGWLTGHYLHDAVGTFYMNRHQGRLHPEARLIIVYPATILCCVSLIVLGFAF  301
              G +   IG L    L D            RL    RL++     IL  + L++L    
Sbjct  242  GLGGLLGAIGRLLLGRLSD------------RLGRRRRLLLALLLLILAALGLLLLSLTL  289

Query  302  ERHWHYMVIAVFAAMQCSSMMIITTAINAYLLDCYPEG-SGEVGAWVTASRNWGGFMAT  359
               W  + + +          ++  A+NA + D  P+   G        + + GG +  
Sbjct  290  SSLWLLLALLLLGF----GFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.333    0.143    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00013455

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            59.4    6e-11


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 59.4 bits (144),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 0/151 (0%)

Query  2    MTREWNLSQATVQRAVVGNLFTIGSCGIIVVVLAGYFGRMPVLLLFQAVMVGTCAWSAAA  61
            +  +  +S   +   +            +   L+  FGR  VLL+   +          A
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  62   TSFESYMAARIINGLFCSVGQGGALLWIKDLFFFHEHPKVINYIEFFIIMSPYLGPLLTC  121
            +S    +  R++ GL        AL  I D F   E  + +  +     +   LGPLL  
Sbjct  83   SSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGG  142

Query  122  FIVTDVAWRWAFWLCTCMSAVAFLLVFLLDE  152
             + +   WR AF +   +S +A +L+ L   
Sbjct  143  LLASLFGWRAAFLILAILSLLAAVLLLLPRP  173



Lambda      K        H        a         alpha
   0.333    0.144    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00018815

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            77.1    4e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 77.1 bits (190),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 68/359 (19%), Positives = 120/359 (33%), Gaps = 38/359 (11%)

Query  2    MTREWNLSQATVQRAVVGNLFTIGSCGIIVVVLAGYFGRMPVLLLFQAVMVGTCAWSAAA  61
            +  +  +S   +   +            +   L+  FGR  VLL+   +          A
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  62   TSFESYMAARIINGLFCSVGQGGALLWIKDLFFFHEHPKVINYIEFFIIMSPYLGPLLTC  121
            +S    +  R++ GL        AL  I D F   E  + +  +     +   LGPLL  
Sbjct  83   SSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGG  142

Query  122  FIVTDVAWRWAFWLCTCMSAVAFLLVFLLDETLFDRKGRQVPRGSYIARLTGVQQAQLWR  181
             + +   WR AF +   +S +A +L+ L       ++ +                     
Sbjct  143  LLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLS-------------  189

Query  182  ERRFLQCAMRPIVAITRIPVLIILIYYLLNFAWVIGVNTTIGIWLSNDYGFSTRGIGYFY  241
                    +    A+ R PVL +L+  LL      G+ T + ++     G S    G   
Sbjct  190  -------LIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQ-EVLGLSALLAGLLL  241

Query  242  FFGIVGVIIGWLTGHYLHDAVGTFYMNRHQGRLHPEARLIIVYPATILCCVSLIVLGFAF  301
              G +   IG L    L D            RL    RL++     IL  + L++L    
Sbjct  242  GLGGLLGAIGRLLLGRLSD------------RLGRRRRLLLALLLLILAALGLLLLSLTL  289

Query  302  ERHWHYMVIAVFAAMQCSSMMIITTAINAYLLDCYPEG-SGEVGAWVTASRNWGGFMAT  359
               W  + + +          ++  A+NA + D  P+   G        + + GG +  
Sbjct  290  SSLWLLLALLLLGF----GFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.333    0.144    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00018816

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00013457

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00013458

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            92.1    6e-21


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 92.1 bits (229),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 71/380 (19%), Positives = 128/380 (34%), Gaps = 40/380 (11%)

Query  76   YIAFLADYTGGTAIITIIPQSI--EWNLSQATVQRAVVGNLFTIGSCGIIVVVLAGYFGR  133
            ++A      G + +   +P  +  +  +S   +   +            +   L+  FGR
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  134  MPVLLLFQAVMVGTCAWSAAATSFESYMAARIINGLFCSVGQGGALLWIKDLFFFHEHPK  193
              VLL+   +          A+S    +  R++ GL        AL  I D F   E  +
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  194  VINYIEFFIIMSPYLGPLLTCFIVTDVAWRWAFWLCTCMSAVAFLLVFLLDETLFDRKGR  253
             +  +     +   LGPLL   + +   WR AF +   +S +A +L+ L       ++ +
Sbjct  122  ALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPK  181

Query  254  QVPRGSYIARLTGVQQAQLWRERRFLQCAMRPIVAITRIPVLIILIYYLLNFAWVIGVNT  313
                                         +    A+ R PVL +L+  LL      G+ T
Sbjct  182  PAEEARLS--------------------LIVAWKALLRDPVLWLLLALLLFGFAFFGLLT  221

Query  314  TIGIWLSNDYGFSTRGIGYFYFFGIVGVIIGWLTGHYLHDAVGTFYMNRHQGRLHPEARL  373
             + ++     G S    G     G +   IG L    L D            RL    RL
Sbjct  222  YLPLYQ-EVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSD------------RLGRRRRL  268

Query  374  IIVYPATILCCVSLIVLGFAFERHWHYMVIAVFAAMQCSSMMIITTAINAYLLDCYPEG-  432
            ++     IL  + L++L       W  + + +          ++  A+NA + D  P+  
Sbjct  269  LLALLLLILAALGLLLLSLTLSSLWLLLALLLLGF----GFGLVFPALNALVSDLAPKEE  324

Query  433  SGEVGAWVTASRNWGGFMAT  452
             G        + + GG +  
Sbjct  325  RGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.329    0.142    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00013460

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  86.8    2e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 86.8 bits (215),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 108/279 (39%), Gaps = 30/279 (11%)

Query  146  ISAFFAPHSFVGPIRYSIHYPTFMKQYEEYWENSASATLTWVALLYSIFSLAMKFLPEAK  205
            +  FF       PI   +H P+F++ Y E + + ++       LL +I +L   F     
Sbjct  1    LDLFFKNFHPQFPI---LHRPSFLRDYFELFSSPSNYASP--LLLLAILALGALFSESPT  55

Query  206  DDSGMSEALGKLYHNKSGQCLERI-----KTNQTTLQTLQAMIAHGIFGF-----SHHEE  255
              S  S                 +      +  ++L  LQA++   ++         H  
Sbjct  56   ARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHW-  114

Query  256  WGAGLITHIGSIVRLAMRLGLHRDPSHFSN---LSPFEGEMRRRIWSTIDQIDCLSSFHL  312
                   + G  +RLA  LGLHRDPS+ S    L   E E+RRR++     +D L S  L
Sbjct  115  ------RYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLIL  168

Query  313  GIPAAVRSEDSDTNAPRNLLDTDIEEGMSELPPPRPFSASVPIGYLLAKLKLSRAMRRVV  372
            G P  +   D D   P +  D    +   E+  P     S  I   L  +KLS+ + +++
Sbjct  169  GRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKIL  228

Query  373  EFLNSVQRQPYERVLQLDRDLIEAYRSIPPHLQLNNWHN  411
              L S++    +R LQL    +           L+NW  
Sbjct  229  GSLLSIRSTLDQRDLQLKLSWVRELER-----ALDNWRK  262



Lambda      K        H        a         alpha
   0.318    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 846529460


Query= TCONS_00013459

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  85.2    5e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 85.2 bits (211),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 108/279 (39%), Gaps = 30/279 (11%)

Query  53   ISAFFAPHSFVGPIRYSIHYPTFMKQYEEYWENSASATLTWVALLYSIFSLAMKFLPEAK  112
            +  FF       PI   +H P+F++ Y E + + ++       LL +I +L   F     
Sbjct  1    LDLFFKNFHPQFPI---LHRPSFLRDYFELFSSPSNYASP--LLLLAILALGALFSESPT  55

Query  113  DDSGMSEALGKLYHNKSGQCLERI-----KTNQTTLQTLQAMIAHGIFGF-----SHHEE  162
              S  S                 +      +  ++L  LQA++   ++         H  
Sbjct  56   ARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHW-  114

Query  163  WGAGLITHIGSIVRLAMRLGLHRDPSHFSN---LSPFEGEMRRRIWSTIDQIDCLSSFHL  219
                   + G  +RLA  LGLHRDPS+ S    L   E E+RRR++     +D L S  L
Sbjct  115  ------RYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLIL  168

Query  220  GIPAAVRSEDSDTNAPRNLLDTDIEEGMSELPPPRPFSASVPIGYLLAKLKLSRAMRRVV  279
            G P  +   D D   P +  D    +   E+  P     S  I   L  +KLS+ + +++
Sbjct  169  GRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKIL  228

Query  280  EFLNSVQRQPYERVLQLDRDLIEAYRSIPPHLQLNNWHN  318
              L S++    +R LQL    +           L+NW  
Sbjct  229  GSLLSIRSTLDQRDLQLKLSWVRELER-----ALDNWRK  262



Lambda      K        H        a         alpha
   0.319    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 720314296


Query= TCONS_00013462

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  85.2    5e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 85.2 bits (211),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 108/279 (39%), Gaps = 30/279 (11%)

Query  53   ISAFFAPHSFVGPIRYSIHYPTFMKQYEEYWENSASATLTWVALLYSIFSLAMKFLPEAK  112
            +  FF       PI   +H P+F++ Y E + + ++       LL +I +L   F     
Sbjct  1    LDLFFKNFHPQFPI---LHRPSFLRDYFELFSSPSNYASP--LLLLAILALGALFSESPT  55

Query  113  DDSGMSEALGKLYHNKSGQCLERI-----KTNQTTLQTLQAMIAHGIFGF-----SHHEE  162
              S  S                 +      +  ++L  LQA++   ++         H  
Sbjct  56   ARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHW-  114

Query  163  WGAGLITHIGSIVRLAMRLGLHRDPSHFSN---LSPFEGEMRRRIWSTIDQIDCLSSFHL  219
                   + G  +RLA  LGLHRDPS+ S    L   E E+RRR++     +D L S  L
Sbjct  115  ------RYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLIL  168

Query  220  GIPAAVRSEDSDTNAPRNLLDTDIEEGMSELPPPRPFSASVPIGYLLAKLKLSRAMRRVV  279
            G P  +   D D   P +  D    +   E+  P     S  I   L  +KLS+ + +++
Sbjct  169  GRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKIL  228

Query  280  EFLNSVQRQPYERVLQLDRDLIEAYRSIPPHLQLNNWHN  318
              L S++    +R LQL    +           L+NW  
Sbjct  229  GSLLSIRSTLDQRDLQLKLSWVRELER-----ALDNWRK  262



Lambda      K        H        a         alpha
   0.320    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 679815634


Query= TCONS_00013461

Length=685
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  86.4    3e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 86.4 bits (214),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 103/262 (39%), Gaps = 27/262 (10%)

Query  181  IHYPTFMKQYEEYWENSASATLTWVALLYSIFSLAMKFLPEAKDDSGMSEALGKLYHNKS  240
            +H P+F++ Y E + + ++       LL +I +L   F       S  S           
Sbjct  15   LHRPSFLRDYFELFSSPSNYASP--LLLLAILALGALFSESPTARSSSSLTDEAADGIHF  72

Query  241  GQCLERI-----KTNQTTLQTLQAMIAHGIFGF-----SHHEEWGAGLITHIGSIVRLAM  290
                  +      +  ++L  LQA++   ++         H         + G  +RLA 
Sbjct  73   FLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHW-------RYHGLAIRLAR  125

Query  291  RLGLHRDPSHFSN---LSPFEGEMRRRIWSTIDQIDCLSSFHLGIPAAVRSEDSDTNAPR  347
             LGLHRDPS+ S    L   E E+RRR++     +D L S  LG P  +   D D   P 
Sbjct  126  SLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPC  185

Query  348  NLLDTDIEEGMSELPPPRPFSASVPIGYLLAKLKLSRAMRRVVEFLNSVQRQPYERVLQL  407
            +  D    +   E+  P     S  I   L  +KLS+ + +++  L S++    +R LQL
Sbjct  186  DDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIRSTLDQRDLQL  245

Query  408  DRDLIEAYRSIPPHLQLNNWHN  429
                +           L+NW  
Sbjct  246  KLSWVRELER-----ALDNWRK  262



Lambda      K        H        a         alpha
   0.319    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 873075680


Query= TCONS_00018817

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  84.8    7e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 84.8 bits (210),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 103/262 (39%), Gaps = 27/262 (10%)

Query  88   IHYPTFMKQYEEYWENSASATLTWVALLYSIFSLAMKFLPEAKDDSGMSEALGKLYHNKS  147
            +H P+F++ Y E + + ++       LL +I +L   F       S  S           
Sbjct  15   LHRPSFLRDYFELFSSPSNYASP--LLLLAILALGALFSESPTARSSSSLTDEAADGIHF  72

Query  148  GQCLERI-----KTNQTTLQTLQAMIAHGIFGF-----SHHEEWGAGLITHIGSIVRLAM  197
                  +      +  ++L  LQA++   ++         H         + G  +RLA 
Sbjct  73   FLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHW-------RYHGLAIRLAR  125

Query  198  RLGLHRDPSHFSN---LSPFEGEMRRRIWSTIDQIDCLSSFHLGIPAAVRSEDSDTNAPR  254
             LGLHRDPS+ S    L   E E+RRR++     +D L S  LG P  +   D D   P 
Sbjct  126  SLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPC  185

Query  255  NLLDTDIEEGMSELPPPRPFSASVPIGYLLAKLKLSRAMRRVVEFLNSVQRQPYERVLQL  314
            +  D    +   E+  P     S  I   L  +KLS+ + +++  L S++    +R LQL
Sbjct  186  DDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIRSTLDQRDLQL  245

Query  315  DRDLIEAYRSIPPHLQLNNWHN  336
                +           L+NW  
Sbjct  246  KLSWVRELER-----ALDNWRK  262



Lambda      K        H        a         alpha
   0.320    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 696403448


Query= TCONS_00013464

Length=592
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  85.2    5e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 85.2 bits (211),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 103/262 (39%), Gaps = 27/262 (10%)

Query  88   IHYPTFMKQYEEYWENSASATLTWVALLYSIFSLAMKFLPEAKDDSGMSEALGKLYHNKS  147
            +H P+F++ Y E + + ++       LL +I +L   F       S  S           
Sbjct  15   LHRPSFLRDYFELFSSPSNYASP--LLLLAILALGALFSESPTARSSSSLTDEAADGIHF  72

Query  148  GQCLERI-----KTNQTTLQTLQAMIAHGIFGF-----SHHEEWGAGLITHIGSIVRLAM  197
                  +      +  ++L  LQA++   ++         H         + G  +RLA 
Sbjct  73   FLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHW-------RYHGLAIRLAR  125

Query  198  RLGLHRDPSHFSN---LSPFEGEMRRRIWSTIDQIDCLSSFHLGIPAAVRSEDSDTNAPR  254
             LGLHRDPS+ S    L   E E+RRR++     +D L S  LG P  +   D D   P 
Sbjct  126  SLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPC  185

Query  255  NLLDTDIEEGMSELPPPRPFSASVPIGYLLAKLKLSRAMRRVVEFLNSVQRQPYERVLQL  314
            +  D    +   E+  P     S  I   L  +KLS+ + +++  L S++    +R LQL
Sbjct  186  DDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIRSTLDQRDLQL  245

Query  315  DRDLIEAYRSIPPHLQLNNWHN  336
                +           L+NW  
Sbjct  246  KLSWVRELER-----ALDNWRK  262



Lambda      K        H        a         alpha
   0.319    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 747214000


Query= TCONS_00013463

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  86.4    2e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 86.4 bits (214),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 108/279 (39%), Gaps = 30/279 (11%)

Query  146  ISAFFAPHSFVGPIRYSIHYPTFMKQYEEYWENSASATLTWVALLYSIFSLAMKFLPEAK  205
            +  FF       PI   +H P+F++ Y E + + ++       LL +I +L   F     
Sbjct  1    LDLFFKNFHPQFPI---LHRPSFLRDYFELFSSPSNYASP--LLLLAILALGALFSESPT  55

Query  206  DDSGMSEALGKLYHNKSGQCLERI-----KTNQTTLQTLQAMIAHGIFGF-----SHHEE  255
              S  S                 +      +  ++L  LQA++   ++         H  
Sbjct  56   ARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHW-  114

Query  256  WGAGLITHIGSIVRLAMRLGLHRDPSHFSN---LSPFEGEMRRRIWSTIDQIDCLSSFHL  312
                   + G  +RLA  LGLHRDPS+ S    L   E E+RRR++     +D L S  L
Sbjct  115  ------RYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLIL  168

Query  313  GIPAAVRSEDSDTNAPRNLLDTDIEEGMSELPPPRPFSASVPIGYLLAKLKLSRAMRRVV  372
            G P  +   D D   P +  D    +   E+  P     S  I   L  +KLS+ + +++
Sbjct  169  GRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKIL  228

Query  373  EFLNSVQRQPYERVLQLDRDLIEAYRSIPPHLQLNNWHN  411
              L S++    +R LQL    +           L+NW  
Sbjct  229  GSLLSIRSTLDQRDLQLKLSWVRELER-----ALDNWRK  262



Lambda      K        H        a         alpha
   0.319    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 796386600


Query= TCONS_00018818

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  86.8    2e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 86.8 bits (215),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 108/279 (39%), Gaps = 30/279 (11%)

Query  146  ISAFFAPHSFVGPIRYSIHYPTFMKQYEEYWENSASATLTWVALLYSIFSLAMKFLPEAK  205
            +  FF       PI   +H P+F++ Y E + + ++       LL +I +L   F     
Sbjct  1    LDLFFKNFHPQFPI---LHRPSFLRDYFELFSSPSNYASP--LLLLAILALGALFSESPT  55

Query  206  DDSGMSEALGKLYHNKSGQCLERI-----KTNQTTLQTLQAMIAHGIFGF-----SHHEE  255
              S  S                 +      +  ++L  LQA++   ++         H  
Sbjct  56   ARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHW-  114

Query  256  WGAGLITHIGSIVRLAMRLGLHRDPSHFSN---LSPFEGEMRRRIWSTIDQIDCLSSFHL  312
                   + G  +RLA  LGLHRDPS+ S    L   E E+RRR++     +D L S  L
Sbjct  115  ------RYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLIL  168

Query  313  GIPAAVRSEDSDTNAPRNLLDTDIEEGMSELPPPRPFSASVPIGYLLAKLKLSRAMRRVV  372
            G P  +   D D   P +  D    +   E+  P     S  I   L  +KLS+ + +++
Sbjct  169  GRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKIL  228

Query  373  EFLNSVQRQPYERVLQLDRDLIEAYRSIPPHLQLNNWHN  411
              L S++    +R LQL    +           L+NW  
Sbjct  229  GSLLSIRSTLDQRDLQLKLSWVRELER-----ALDNWRK  262



Lambda      K        H        a         alpha
   0.318    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 846529460


Query= TCONS_00013465

Length=644
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  87.2    1e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 87.2 bits (216),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 108/279 (39%), Gaps = 30/279 (11%)

Query  123  ISAFFAPHSFVGPIRYSIHYPTFMKQYEEYWENSASATLTWVALLYSIFSLAMKFLPEAK  182
            +  FF       PI   +H P+F++ Y E + + ++       LL +I +L   F     
Sbjct  1    LDLFFKNFHPQFPI---LHRPSFLRDYFELFSSPSNYASP--LLLLAILALGALFSESPT  55

Query  183  DDSGMSEALGKLYHNKSGQCLERI-----KTNQTTLQTLQAMIAHGIFGF-----SHHEE  232
              S  S                 +      +  ++L  LQA++   ++         H  
Sbjct  56   ARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHW-  114

Query  233  WGAGLITHIGSIVRLAMRLGLHRDPSHFSN---LSPFEGEMRRRIWSTIDQIDCLSSFHL  289
                   + G  +RLA  LGLHRDPS+ S    L   E E+RRR++     +D L S  L
Sbjct  115  ------RYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLIL  168

Query  290  GIPAAVRSEDSDTNAPRNLLDTDIEEGMSELPPPRPFSASVPIGYLLAKLKLSRAMRRVV  349
            G P  +   D D   P +  D    +   E+  P     S  I   L  +KLS+ + +++
Sbjct  169  GRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKIL  228

Query  350  EFLNSVQRQPYERVLQLDRDLIEAYRSIPPHLQLNNWHN  388
              L S++    +R LQL    +           L+NW  
Sbjct  229  GSLLSIRSTLDQRDLQLKLSWVRELER-----ALDNWRK  262



Lambda      K        H        a         alpha
   0.318    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 812609290


Query= TCONS_00013466

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  85.2    4e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 85.2 bits (211),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 103/262 (39%), Gaps = 27/262 (10%)

Query  46   IHYPTFMKQYEEYWENSASATLTWVALLYSIFSLAMKFLPEAKDDSGMSEALGKLYHNKS  105
            +H P+F++ Y E + + ++       LL +I +L   F       S  S           
Sbjct  15   LHRPSFLRDYFELFSSPSNYASP--LLLLAILALGALFSESPTARSSSSLTDEAADGIHF  72

Query  106  GQCLERI-----KTNQTTLQTLQAMIAHGIFGF-----SHHEEWGAGLITHIGSIVRLAM  155
                  +      +  ++L  LQA++   ++         H         + G  +RLA 
Sbjct  73   FLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHW-------RYHGLAIRLAR  125

Query  156  RLGLHRDPSHFSN---LSPFEGEMRRRIWSTIDQIDCLSSFHLGIPAAVRSEDSDTNAPR  212
             LGLHRDPS+ S    L   E E+RRR++     +D L S  LG P  +   D D   P 
Sbjct  126  SLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPC  185

Query  213  NLLDTDIEEGMSELPPPRPFSASVPIGYLLAKLKLSRAMRRVVEFLNSVQRQPYERVLQL  272
            +  D    +   E+  P     S  I   L  +KLS+ + +++  L S++    +R LQL
Sbjct  186  DDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIRSTLDQRDLQL  245

Query  273  DRDLIEAYRSIPPHLQLNNWHN  294
                +           L+NW  
Sbjct  246  KLSWVRELER-----ALDNWRK  262



Lambda      K        H        a         alpha
   0.319    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684448024


Query= TCONS_00013467

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00018819

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0787    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00013468

Length=899
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465930 pfam18951, DUF5695, Family of unknown function (DUF569...  1413    0.0  


>CDD:465930 pfam18951, DUF5695, Family of unknown function (DUF5695).  This 
is a family of unknown function mainly found in fungi and 
bacteria.
Length=858

 Score = 1413 bits (3660),  Expect = 0.0, Method: Composition-based stats.
 Identities = 487/868 (56%), Positives = 579/868 (67%), Gaps = 27/868 (3%)

Query  45   KLVKDAQVLASLTPK-GKSFDFLPFDYLSVRTENQQYHNGDITFSYRATGETEWVKVDSA  103
            KLVKD+Q LASL PK   SFDFLP D LS R  N QYH GDIT  YR  G T W    SA
Sbjct  1    KLVKDSQTLASLKPKSDPSFDFLPSDRLSERAGNGQYHLGDITLRYRTAGGTAWTDGSSA  60

Query  104  KSRKAVTVVQAKDALAAADL--TPTLPANSPLRIIRKWVDVDGDLGMSFTATNTADHDVE  161
             +RK VT + A      A    TPTLP+  PL I R+W DVDGDL + FT TNT+   VE
Sbjct  61   AARKPVTALPASGGGVLAAADLTPTLPSGIPLNITRRWEDVDGDLVLRFTLTNTSSQAVE  120

Query  162  IGSLGFPAEFNSIFTNRSPEEMSAKCSLTDPYIGMDAGYLQVTPTSGTGEALIVTPMDNT  221
            IGSLGFP EFN+IFT R+ EE  AKCS  DPYIG+DAGYLQVT  SGTG AL+VTP+ NT
Sbjct  121  IGSLGFPMEFNNIFTGRTLEEAHAKCSFFDPYIGLDAGYLQVTRLSGTGPALLVTPLGNT  180

Query  222  STPFEAWHNLHEPYFDSTAYESQTFEGFYEWLVHSTAYAGTEWRKAKPWNPPTSRILEAG  281
              PFEA+  L EP FD   Y SQTFEGFYEW VHS AYA  EW+  +PWN PTSR L+ G
Sbjct  181  --PFEAYRPLLEPIFDDPTYRSQTFEGFYEWQVHSKAYAENEWKGVEPWNEPTSRTLKPG  238

Query  282  QSTTVGLRFSVVKDGIRGIQKAVRATNTPLTIGT-GYVVPRDLTVQLRILAPADIVSV-V  339
            +S T GLRF +    IRGI+  + AT  P+ +G  GYVVP DL  +L +  P+ + S+ V
Sbjct  239  ESRTYGLRFVLA-PSIRGIEDTLIATGRPVAVGIPGYVVPTDLPAKLFLKYPSKVKSITV  297

Query  340  SEDNALAITRKDNT----LLLTPTGSAWGRNRLTITYADGKTQTVHYFITESAPDAVARL  395
            S   AL IT   +T    +  T TG AWGR RLTITYADGK QTVHY +T+  P+ VA L
Sbjct  298  SPAGALTITEVSDTKNGWVAYTVTGKAWGRARLTITYADGKVQTVHYKVTKPEPEVVADL  357

Query  396  GQFSTSTMWFTDTSDPFGRAPSIMSYDASTKKPVLQDPRVWIAGLSDEGGV-IYMATAMK  454
            G F T+  WF DTSDPFGRAPS++SYD      V QDPRVWIAGLSDEGG   ++A AMK
Sbjct  358  GNFLTTKQWFDDTSDPFGRAPSVISYDYEANAIVTQDPRVWIAGLSDEGGAGSWLAAAMK  417

Query  455  QSAHPDTNEIAKLEEFVSKVLFPTIQNGSDL----VRKSIFFYEPSAVPGYSYSKPIDWG  510
            Q   P+  E+AKLE FV++ L+ TIQ         VRKS+F+YEP +VP Y+YS  I+W 
Sbjct  418  QLVQPNAEEVAKLERFVNETLWGTIQYAEGPDKYGVRKSLFYYEPDSVPDYTYSPSINWK  477

Query  511  NWWSWNKADSYSTQRSYDYIHVVATYWALYRAGRDQPGLLKQRTWQWYLSRAVNTTIACF  570
             W SWNK  +Y T R+Y+Y HV A YW LYR  R+ PGL+ +  WQWYL++A  T +A  
Sbjct  478  TWTSWNKKAAYDTGRAYNYPHVAAAYWVLYRLARNYPGLVTRHDWQWYLNQAYETVMAMM  537

Query  571  ATDSAGRELVQYSRVGQMGETVVGELLHDLRREGWSKEADAVEVSMKKRADLWNSQAEPF  630
                       Y++ G M ETV  E+L DL+REG ++EA A+E +MKKRAD W + A PF
Sbjct  538  EDA------PYYAQFGLMEETVFLEILKDLKREGLTEEATALEAAMKKRADHWATLAYPF  591

Query  631  GSEMAWDSTGQEGVYYWSNYFKLTSTATKTINSILGYMPTVSHWGWNGNARRYWDFIYAG  690
            GSEMAWDSTGQE VYYWS YF  T TATKT+NSILGYMPTV HWG+NGNARRYWDF+Y G
Sbjct  592  GSEMAWDSTGQEEVYYWSRYFGYTDTATKTLNSILGYMPTVPHWGYNGNARRYWDFLYGG  651

Query  691  KLQRIERMIHHYGSSLNAIPLLTQFRQQPKDTYLLRVGYGGVSGPLTNIRQDGSMYNAFH  750
            KL RIER IHHYGS LNA+PLL+ +R  P D YLLRVGYGG+ GPL+NI QDG    AFH
Sbjct  652  KLSRIERQIHHYGSGLNALPLLSAYRDNPADLYLLRVGYGGLMGPLSNIDQDGFASAAFH  711

Query  751  SFPDTLVGDDYSGDYGPSFLGVMLASATYVVDDPDLGLVAYGGNLAVDGQVVTVQPRDAV  810
            SFPDTL  D YSGDYGP FLG  L S TY+VDDPD G +A+GGN+   G  VTV+P DAV
Sbjct  712  SFPDTLKWDGYSGDYGPGFLGHALGSGTYLVDDPDFGWLAFGGNVTESGGWVTVEPTDAV  771

Query  811  RQRIYISSMGVYIVVSSGWIDQCSFARANAKQVTLQLVP---GPSKATSAIVWVENPGSS  867
            R+R++I+ +G++I + +G I+  S+       VTL L P   G  KA  A+ W E  G  
Sbjct  772  RRRVFIAPLGLWITLDAGKIESVSYDPKT-GSVTLTLAPATAGTPKARLAVEWTETTGGG  830

Query  868  TQYKVISQAKAMRGGWQVQLANVGVEVT  895
              Y         RGG+ V L + G  V 
Sbjct  831  GAYTPSGGGTKERGGYVVPLGSGGATVV  858



Lambda      K        H        a         alpha
   0.317    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1154153256


Query= TCONS_00013469

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.147    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00018820

Length=649
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465930 pfam18951, DUF5695, Family of unknown function (DUF569...  1000    0.0  


>CDD:465930 pfam18951, DUF5695, Family of unknown function (DUF5695).  This 
is a family of unknown function mainly found in fungi and 
bacteria.
Length=858

 Score = 1000 bits (2589),  Expect = 0.0, Method: Composition-based stats.
 Identities = 346/619 (56%), Positives = 412/619 (67%), Gaps = 23/619 (4%)

Query  45   KLVKDAQVLASLTPK-GKSFDFLPFDYLSVRTENQQYHNGDITFSYRATGETEWVKVDSA  103
            KLVKD+Q LASL PK   SFDFLP D LS R  N QYH GDIT  YR  G T W    SA
Sbjct  1    KLVKDSQTLASLKPKSDPSFDFLPSDRLSERAGNGQYHLGDITLRYRTAGGTAWTDGSSA  60

Query  104  KSRKAVTVVQAKDALAAADL--TPTLPANSPLRIIRKWVDVDGDLGMSFTATNTADHDVE  161
             +RK VT + A      A    TPTLP+  PL I R+W DVDGDL + FT TNT+   VE
Sbjct  61   AARKPVTALPASGGGVLAAADLTPTLPSGIPLNITRRWEDVDGDLVLRFTLTNTSSQAVE  120

Query  162  IGSLGFPAEFNSIFTNRSPEEMSAKCSLTDPYIGMDAGYLQVTPTSGTGEALIVTPMDNT  221
            IGSLGFP EFN+IFT R+ EE  AKCS  DPYIG+DAGYLQVT  SGTG AL+VTP+ N 
Sbjct  121  IGSLGFPMEFNNIFTGRTLEEAHAKCSFFDPYIGLDAGYLQVTRLSGTGPALLVTPLGN-  179

Query  222  STPFEAWHNLHEPYFDSTAYESQTFEGFYEWLVHSTAYAGTEWRKAKPWNPPTSRILEAG  281
             TPFEA+  L EP FD   Y SQTFEGFYEW VHS AYA  EW+  +PWN PTSR L+ G
Sbjct  180  -TPFEAYRPLLEPIFDDPTYRSQTFEGFYEWQVHSKAYAENEWKGVEPWNEPTSRTLKPG  238

Query  282  QSTTVGLRFSVVKDGIRGIQKAVRATNTPLTIGT-GYVVPRDLTVQLRILAPADIVSV-V  339
            +S T GLRF +    IRGI+  + AT  P+ +G  GYVVP DL  +L +  P+ + S+ V
Sbjct  239  ESRTYGLRFVLA-PSIRGIEDTLIATGRPVAVGIPGYVVPTDLPAKLFLKYPSKVKSITV  297

Query  340  SEDNALAITRKDNT----LLLTPTGSAWGRNRLTITYADGKTQTVHYFITESAPDAVARL  395
            S   AL IT   +T    +  T TG AWGR RLTITYADGK QTVHY +T+  P+ VA L
Sbjct  298  SPAGALTITEVSDTKNGWVAYTVTGKAWGRARLTITYADGKVQTVHYKVTKPEPEVVADL  357

Query  396  GQFSTSTMWFTDTSDPFGRAPSIMSYDASTKKPVLQDPRVWIAGLSDEGGV-IYMATAMK  454
            G F T+  WF DTSDPFGRAPS++SYD      V QDPRVWIAGLSDEGG   ++A AMK
Sbjct  358  GNFLTTKQWFDDTSDPFGRAPSVISYDYEANAIVTQDPRVWIAGLSDEGGAGSWLAAAMK  417

Query  455  QSAHPDTNEIAKLEEFVSKVLFPTIQNGSDL----VRKSIFFYEPSAVPGYSYSKPIDWG  510
            Q   P+  E+AKLE FV++ L+ TIQ         VRKS+F+YEP +VP Y+YS  I+W 
Sbjct  418  QLVQPNAEEVAKLERFVNETLWGTIQYAEGPDKYGVRKSLFYYEPDSVPDYTYSPSINWK  477

Query  511  NWWSWNKADSYSTQRSYDYIHVVATYWALYRAGRDQPGLLKQRTWQWYLSRAVNTTIACF  570
             W SWNK  +Y T R+Y+Y HV A YW LYR  R+ PGL+ +  WQWYL++A  T +A  
Sbjct  478  TWTSWNKKAAYDTGRAYNYPHVAAAYWVLYRLARNYPGLVTRHDWQWYLNQAYETVMAMM  537

Query  571  ATDSAGRELVQYSRVGQMGETVVGELLHDLRREGWSKEADAVEVSMKKRADLWNSQAEPF  630
                       Y++ G M ETV  E+L DL+REG ++EA A+E +MKKRAD W + A PF
Sbjct  538  EDA------PYYAQFGLMEETVFLEILKDLKREGLTEEATALEAAMKKRADHWATLAYPF  591

Query  631  GSEMAWDSTGQEGVYYWSK  649
            GSEMAWDSTGQE VYYWS+
Sbjct  592  GSEMAWDSTGQEEVYYWSR  610



Lambda      K        H        a         alpha
   0.316    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 819983240


Query= TCONS_00013470

Length=388


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00013471

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00013472

Length=290


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00013473

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  153     2e-46
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  146     2e-44


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 153 bits (389),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 65/243 (27%), Positives = 102/243 (42%), Gaps = 19/243 (8%)

Query  16   SGIGAATCRLLAERGAAVLCVCDISPKNFDDLKISIKKINPSTKVHCATVDVTSSVEVRQ  75
            SGIG A  R LAE GA V+ + D++    + L   ++++           DVT   +V  
Sbjct  6    SGIGWAIARALAEEGAEVV-LTDLN----EALAKRVEELAEELGAAVLPCDVTDEEQVEA  60

Query  76   WIEGIISDFGDLHGAVNAAGIAQGAGMRNTPTIAEEVDEEWTRIMNTNLNGVFYCTREEV  135
             +   +  FG L   VN AG A            +   E++ R ++ NL  +F   +  +
Sbjct  61   LVAAAVEKFGRLDILVNNAGFAPKLKGP----FLDTSREDFDRALDVNLYSLFLLAKAAL  116

Query  136  RAMKGLPATDRSIVNVGSIASVSHMPDVYAYGTSKGACAYFTTCVAADAFPLGIRINNVS  195
              MK       SIVN+ SI +   +P+  AYG +K A    T  +A +  P GIR+N +S
Sbjct  117  PLMKE----GGSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAIS  172

Query  196  PGVTNTPMLPQFAPMAKTFEEIEESY--KKEGLSLIEAEDVARTIVWLLSEDSRPVFGAN  253
            PG   T          +     E      + G      E+VA    +L S+ +  + G  
Sbjct  173  PGPIKTLAASGIPGFDELLAAAEARAPLGRLG----TPEEVANAAAFLASDLASYITGQV  228

Query  254  INV  256
            + V
Sbjct  229  LYV  231


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 146 bits (372),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 66/199 (33%), Positives = 97/199 (49%), Gaps = 13/199 (7%)

Query  7    RIIAITGGASGIGAATCRLLAERGAAVLCVCDISPKNFDDLKISIKKI-NPSTKVHCATV  65
            ++  +TG +SGIG A  + LA+ GA V+ + D S    + L+   K++     K      
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVV-LVDRSE---EKLEAVAKELGALGGKALFIQG  56

Query  66   DVTSSVEVRQWIEGIISDFGDLHGAVNAAGIAQGAGMRNTPTIAEEVDEEWTRIMNTNLN  125
            DVT   +V+  +E  +   G L   VN       AG+      +E  DE+W R+++ NL 
Sbjct  57   DVTDRAQVKALVEQAVERLGRLDILVN------NAGITGLGPFSELSDEDWERVIDVNLT  110

Query  126  GVFYCTREEVRAMKGLPATDRSIVNVGSIASVSHMPDVYAYGTSKGACAYFTTCVAADAF  185
            GVF  TR  + AM         IVN+ S+A +   P   AY  SK A   FT  +A +  
Sbjct  111  GVFNLTRAVLPAMIKGSGG--RIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELA  168

Query  186  PLGIRINNVSPGVTNTPML  204
            P GIR+N V+PG  +T M 
Sbjct  169  PHGIRVNAVAPGGVDTDMT  187



Lambda      K        H        a         alpha
   0.318    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00013474

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  108     5e-26


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 108 bits (273),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 117/265 (44%), Gaps = 18/265 (7%)

Query  231  PPILRPIAQWFL-PACRRLRYLASRTRGLIEPVIAARQKEKAICYSHGRQPPVYDDAIEW  289
               L PI ++F  P  R+L+    + + L++ +I   ++ + +  +        D  +  
Sbjct  191  LLDLFPILKYFPGPHGRKLKRARKKIKDLLDKLI--EERRETLDSAKKSPRDFLDALLLA  248

Query  290  TERAAKGRPYDA--AMSPLLFSINALHTTTDLLTQVILDLSTQPDLIVALRQEILSVKPQ  347
             E     +  D     + L        TT+  L+  + +L+  P++   LR+EI  V   
Sbjct  249  KEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGD  308

Query  348  QNGWKNASLNQLLLMDSAIKESQRLKPTESILMRRYAMDDLTLADGNKIPKGTVLGIPIF  407
            +       L  +  +D+ IKE+ RL P   +L+ R    D  +  G  IPKGT++ + ++
Sbjct  309  KRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVI-PGYLIPKGTLVIVNLY  367

Query  408  GM-RDPKIYVDPDMYDGYRFQKMRDKPG-FENKCQLVSTSPWHLGFGHGIHACPGRFLAA  465
             + RDP+++ +P+ +D          P  F ++      S   L FG G   C G  LA 
Sbjct  368  ALHRDPEVFPNPEEFD----------PERFLDENGKFRKSFAFLPFGAGPRNCLGERLAR  417

Query  466  VQVKIILCYIVAKYDFKLAGGAPPK  490
            +++K+ L  ++  ++ +L  G  P 
Sbjct  418  MEMKLFLATLLQNFEVELPPGTDPP  442



Lambda      K        H        a         alpha
   0.322    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 648020248


Query= TCONS_00013475

Length=494


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00013476

Length=391
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463422 pfam11991, Trp_DMAT, Tryptophan dimethylallyltransfera...  454     6e-161


>CDD:463422 pfam11991, Trp_DMAT, Tryptophan dimethylallyltransferase.  This 
family of proteins represents tryptophan dimethylallyltransferase 
(EC:2.5.1.34), which catalyzes the first step of ergot 
alkaloid biosynthesis. Ergot alkaloids, which are produced 
by endophyte fungi, can enhance plant host fitness, but also 
cause livestock toxicosis to host plants. This protein is 
found in bacteria and eukaryotes. Proteins in this family 
are typically between 390 to 465 amino acids in length.
Length=356

 Score = 454 bits (1170),  Expect = 6e-161, Method: Composition-based stats.
 Identities = 162/359 (45%), Positives = 211/359 (59%), Gaps = 11/359 (3%)

Query  33   DQKLWWHSTAPMFAKMLETANYTTPCQYQYLITYKECVIPSLGCYPTNSAPRWLSILTRY  92
            DQ+ WWH+T PM A++LE A Y+   QY++L+ ++  V+P+LG YP +  PRW S+LT  
Sbjct  1    DQRFWWHATGPMLARLLEEAGYSVEQQYEHLLFFRHVVVPALGPYPASPRPRWKSLLTDD  60

Query  93   GTPFELSLNCSN---SIVRYTFEPINQHTGTDKDPFNTHAIWESLQHLLPLEKSIDLEWF  149
            G+PFELS N        VR+ FEPI    GT  DPFN  A  E L  L  L   +DL WF
Sbjct  61   GSPFELSWNFQGSGKPTVRFAFEPIGPLAGTPADPFNQQATRELLDRLARLGPGVDLTWF  120

Query  150  RHFKHDLTLNSEESAFLAHNDRLVGGTIRTQNKLALDLKDGRFALKTYIYPALKAVVTGK  209
             HF   L L+ EE+A LA      GG  R+Q  LA DLK G+  LK Y YP LKA+ TG 
Sbjct  121  DHFADALLLSDEEAAALAEKSPP-GGARRSQAFLAFDLKGGKIVLKAYFYPRLKALATGV  179

Query  210  TIHELVFGSVRRLAVREPRILPPLNMLEEYIRSRGSKSTASPRLVSCDLTSPAKSRIKIY  269
            +  ELVF ++RRL  +   + P L++LEEY+ S        P ++S D   P+KSR+KIY
Sbjct  180  SPLELVFDAIRRLD-KPANLEPALDLLEEYLASL--NPDLPPEMLSIDCVDPSKSRLKIY  236

Query  270  LLEQMVSLEAMEDLWTLGGRRRDASTLEGLSLVRELW-DLIQLSPGLKSYPAPYLPLGVI  328
            +     S  ++ D+WTLGGR  D  TL+GL L+RELW  L+ L  G +  P     L   
Sbjct  237  VRTPSTSFASVRDVWTLGGRLNDDETLKGLELLRELWHLLLGLPEGFRDDPELP-LLRDP  295

Query  329  PDERLPLMANFTLHQNDPVPEPQVYFTTF--GMNDMAVADALTTFFERRGWSEMARTYE  385
            P E   L+ NF L    P+PEP+VY      G ND+A+A+ALT FFER GW EMA +Y 
Sbjct  296  PHETSGLLYNFELRPGRPLPEPKVYIPVRHYGRNDLAIAEALTEFFERLGWGEMADSYL  354



Lambda      K        H        a         alpha
   0.320    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00013478

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369658 pfam08031, BBE, Berberine and berberine like. This dom...  57.2    8e-12


>CDD:369658 pfam08031, BBE, Berberine and berberine like.  This domain is 
found in the berberine bridge and berberine bridge- like enzymes 
which are involved in the biosynthesis of numerous isoquinoline 
alkaloids. They catalyze the transformation of the 
N-methyl group of (S)-reticuline into the C-8 berberine bridge 
carbon of (S)-scoulerine.
Length=45

 Score = 57.2 bits (139),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 0/45 (0%)

Query  229  SYRNLGDPLESDAAQVYWGPNYKRLLEIKRKWDPEDLFFSQLGVG  273
            +Y N  D    D  + Y+G N++RL+E+K K+DP+++F ++  + 
Sbjct  1    AYVNYPDLDLGDWGERYFGSNFERLVEVKAKYDPDNVFRNEQSIP  45



Lambda      K        H        a         alpha
   0.319    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00018822

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369658 pfam08031, BBE, Berberine and berberine like. This dom...  57.2    8e-12


>CDD:369658 pfam08031, BBE, Berberine and berberine like.  This domain is 
found in the berberine bridge and berberine bridge- like enzymes 
which are involved in the biosynthesis of numerous isoquinoline 
alkaloids. They catalyze the transformation of the 
N-methyl group of (S)-reticuline into the C-8 berberine bridge 
carbon of (S)-scoulerine.
Length=45

 Score = 57.2 bits (139),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 0/45 (0%)

Query  229  SYRNLGDPLESDAAQVYWGPNYKRLLEIKRKWDPEDLFFSQLGVG  273
            +Y N  D    D  + Y+G N++RL+E+K K+DP+++F ++  + 
Sbjct  1    AYVNYPDLDLGDWGERYFGSNFERLVEVKAKYDPDNVFRNEQSIP  45



Lambda      K        H        a         alpha
   0.318    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00013479

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369658 pfam08031, BBE, Berberine and berberine like. This dom...  57.2    8e-12


>CDD:369658 pfam08031, BBE, Berberine and berberine like.  This domain is 
found in the berberine bridge and berberine bridge- like enzymes 
which are involved in the biosynthesis of numerous isoquinoline 
alkaloids. They catalyze the transformation of the 
N-methyl group of (S)-reticuline into the C-8 berberine bridge 
carbon of (S)-scoulerine.
Length=45

 Score = 57.2 bits (139),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 0/45 (0%)

Query  229  SYRNLGDPLESDAAQVYWGPNYKRLLEIKRKWDPEDLFFSQLGVG  273
            +Y N  D    D  + Y+G N++RL+E+K K+DP+++F ++  + 
Sbjct  1    AYVNYPDLDLGDWGERYFGSNFERLVEVKAKYDPDNVFRNEQSIP  45



Lambda      K        H        a         alpha
   0.319    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00018823

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  87.6    4e-21
CDD:369658 pfam08031, BBE, Berberine and berberine like. This dom...  57.2    2e-11


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 87.6 bits (218),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 57/149 (38%), Gaps = 11/149 (7%)

Query  57   PLYSAAVESVDQIQVAVRFAQRHRLRLVVRNTGHDTAGRSSGSDSFQIHCHRMKQIEYHD  116
            P      ES +++   VR A  + L ++ R  G    G +  +    +   R+  I   D
Sbjct  1    PAAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGGAVQTGGIVLDLSRLNGILEID  60

Query  117  NFRALGSDIDRGPAVSVGAGVTLGEMYARGARDG-WVVVGGECPTVGAAGGFLQGGGVSS  175
                           +V AGVTLG++    A  G  + +       G  GG +       
Sbjct  61   ---------PEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNA-GG  110

Query  176  FHSFIDGLAVDNVLEFEVVTAKGDVVVAN  204
            + S   GL  DNVL  EVV A G+VV   
Sbjct  111  YGSEKYGLTRDNVLGLEVVLADGEVVRLG  139


>CDD:369658 pfam08031, BBE, Berberine and berberine like.  This domain is 
found in the berberine bridge and berberine bridge- like enzymes 
which are involved in the biosynthesis of numerous isoquinoline 
alkaloids. They catalyze the transformation of the 
N-methyl group of (S)-reticuline into the C-8 berberine bridge 
carbon of (S)-scoulerine.
Length=45

 Score = 57.2 bits (139),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 0/45 (0%)

Query  459  SYRNLGDPLESDAAQVYWGPNYKRLLEIKRKWDPEDLFFSQLGVG  503
            +Y N  D    D  + Y+G N++RL+E+K K+DP+++F ++  + 
Sbjct  1    AYVNYPDLDLGDWGERYFGSNFERLVEVKAKYDPDNVFRNEQSIP  45



Lambda      K        H        a         alpha
   0.320    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00013477

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369658 pfam08031, BBE, Berberine and berberine like. This dom...  57.2    1e-11


>CDD:369658 pfam08031, BBE, Berberine and berberine like.  This domain is 
found in the berberine bridge and berberine bridge- like enzymes 
which are involved in the biosynthesis of numerous isoquinoline 
alkaloids. They catalyze the transformation of the 
N-methyl group of (S)-reticuline into the C-8 berberine bridge 
carbon of (S)-scoulerine.
Length=45

 Score = 57.2 bits (139),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 0/45 (0%)

Query  351  SYRNLGDPLESDAAQVYWGPNYKRLLEIKRKWDPEDLFFSQLGVG  395
            +Y N  D    D  + Y+G N++RL+E+K K+DP+++F ++  + 
Sbjct  1    AYVNYPDLDLGDWGERYFGSNFERLVEVKAKYDPDNVFRNEQSIP  45



Lambda      K        H        a         alpha
   0.319    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00018824

Length=311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  76.5    9e-18


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 76.5 bits (189),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 53/142 (37%), Gaps = 11/142 (8%)

Query  149  PLYSAAVESVDQIQVAVRFAQRHRLRLVVRNTGHDTAGRSSGSDSFQIHCHRMKQIEYHD  208
            P      ES +++   VR A  + L ++ R  G    G +  +    +   R+  I   D
Sbjct  1    PAAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGGAVQTGGIVLDLSRLNGILEID  60

Query  209  NFRALGSDIDRGPAVSVGAGVTLGEMYARGARDG-WVVVGGECPTVGAAGGFLQGGGVSS  267
                           +V AGVTLG++    A  G  + +       G  GG +       
Sbjct  61   ---------PEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNA-GG  110

Query  268  FHSFIDGLAVDNVLEFEVVTAK  289
            + S   GL  DNVL  EVV A 
Sbjct  111  YGSEKYGLTRDNVLGLEVVLAD  132



Lambda      K        H        a         alpha
   0.324    0.137    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00013480

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  74.5    1e-17


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 74.5 bits (184),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 53/142 (37%), Gaps = 11/142 (8%)

Query  57   PLYSAAVESVDQIQVAVRFAQRHRLRLVVRNTGHDTAGRSSGSDSFQIHCHRMKQIEYHD  116
            P      ES +++   VR A  + L ++ R  G    G +  +    +   R+  I   D
Sbjct  1    PAAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGGAVQTGGIVLDLSRLNGILEID  60

Query  117  NFRALGSDIDRGPAVSVGAGVTLGEMYARGARDG-WVVVGGECPTVGAAGGFLQGGGVSS  175
                           +V AGVTLG++    A  G  + +       G  GG +       
Sbjct  61   ---------PEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNA-GG  110

Query  176  FHSFIDGLAVDNVLEFEVVTAK  197
            + S   GL  DNVL  EVV A 
Sbjct  111  YGSEKYGLTRDNVLGLEVVLAD  132



Lambda      K        H        a         alpha
   0.322    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00013481

Length=628
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  87.6    5e-21
CDD:369658 pfam08031, BBE, Berberine and berberine like. This dom...  57.2    2e-11


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 87.6 bits (218),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 57/149 (38%), Gaps = 11/149 (7%)

Query  149  PLYSAAVESVDQIQVAVRFAQRHRLRLVVRNTGHDTAGRSSGSDSFQIHCHRMKQIEYHD  208
            P      ES +++   VR A  + L ++ R  G    G +  +    +   R+  I   D
Sbjct  1    PAAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGGAVQTGGIVLDLSRLNGILEID  60

Query  209  NFRALGSDIDRGPAVSVGAGVTLGEMYARGARDG-WVVVGGECPTVGAAGGFLQGGGVSS  267
                           +V AGVTLG++    A  G  + +       G  GG +       
Sbjct  61   ---------PEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNA-GG  110

Query  268  FHSFIDGLAVDNVLEFEVVTAKGDVVVAN  296
            + S   GL  DNVL  EVV A G+VV   
Sbjct  111  YGSEKYGLTRDNVLGLEVVLADGEVVRLG  139


>CDD:369658 pfam08031, BBE, Berberine and berberine like.  This domain is 
found in the berberine bridge and berberine bridge- like enzymes 
which are involved in the biosynthesis of numerous isoquinoline 
alkaloids. They catalyze the transformation of the 
N-methyl group of (S)-reticuline into the C-8 berberine bridge 
carbon of (S)-scoulerine.
Length=45

 Score = 57.2 bits (139),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 0/45 (0%)

Query  551  SYRNLGDPLESDAAQVYWGPNYKRLLEIKRKWDPEDLFFSQLGVG  595
            +Y N  D    D  + Y+G N++RL+E+K K+DP+++F ++  + 
Sbjct  1    AYVNYPDLDLGDWGERYFGSNFERLVEVKAKYDPDNVFRNEQSIP  45



Lambda      K        H        a         alpha
   0.321    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789012650


Query= TCONS_00013482

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369658 pfam08031, BBE, Berberine and berberine like. This dom...  57.2    1e-11


>CDD:369658 pfam08031, BBE, Berberine and berberine like.  This domain is 
found in the berberine bridge and berberine bridge- like enzymes 
which are involved in the biosynthesis of numerous isoquinoline 
alkaloids. They catalyze the transformation of the 
N-methyl group of (S)-reticuline into the C-8 berberine bridge 
carbon of (S)-scoulerine.
Length=45

 Score = 57.2 bits (139),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 0/45 (0%)

Query  351  SYRNLGDPLESDAAQVYWGPNYKRLLEIKRKWDPEDLFFSQLGVG  395
            +Y N  D    D  + Y+G N++RL+E+K K+DP+++F ++  + 
Sbjct  1    AYVNYPDLDLGDWGERYFGSNFERLVEVKAKYDPDNVFRNEQSIP  45



Lambda      K        H        a         alpha
   0.319    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00013483

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369658 pfam08031, BBE, Berberine and berberine like. This dom...  57.2    1e-11


>CDD:369658 pfam08031, BBE, Berberine and berberine like.  This domain is 
found in the berberine bridge and berberine bridge- like enzymes 
which are involved in the biosynthesis of numerous isoquinoline 
alkaloids. They catalyze the transformation of the 
N-methyl group of (S)-reticuline into the C-8 berberine bridge 
carbon of (S)-scoulerine.
Length=45

 Score = 57.2 bits (139),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 0/45 (0%)

Query  351  SYRNLGDPLESDAAQVYWGPNYKRLLEIKRKWDPEDLFFSQLGVG  395
            +Y N  D    D  + Y+G N++RL+E+K K+DP+++F ++  + 
Sbjct  1    AYVNYPDLDLGDWGERYFGSNFERLVEVKAKYDPDNVFRNEQSIP  45



Lambda      K        H        a         alpha
   0.319    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00018826

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00013487

Length=104
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400780 pfam08613, Cyclin, Cyclin. This family includes many d...  53.6    7e-11


>CDD:400780 pfam08613, Cyclin, Cyclin.  This family includes many different 
cyclin proteins. Members include the G1/S-specific cyclin 
pas1, and the phosphate system cyclin PHO80/PHO85.
Length=149

 Score = 53.6 bits (129),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 27/82 (33%), Positives = 40/82 (49%), Gaps = 2/82 (2%)

Query  13   SLNSPITRFHSQSSPHISVYDYLWRPTVHATLSPPILLSVVYYIDRLS--AFFPVLTLSS  70
             L SP   F+S++ P IS+  YL R       SP +LLS + Y+DRL          ++S
Sbjct  36   QLQSPELSFYSKAVPAISIGAYLSRIQKFCPSSPAVLLSALIYLDRLVKRCDSEAFVVTS  95

Query  71   LTVHRYLITSALLPARVLATLS  92
               HR LIT+  +  + L+   
Sbjct  96   ANAHRLLITAVTVATKFLSDGF  117



Lambda      K        H        a         alpha
   0.325    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00018829

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00013486

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00013488

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00013490

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00013492

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00013491

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00018830

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00013493

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00018831

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00013494

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00018832

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00013495

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00013496

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00018834

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00018835

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00013497

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00013499

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00013500

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00018836

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00013502

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00018837

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00013503

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00018838

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00018839

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00013504

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00013505

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00013506

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00013507

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00013508

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00018840

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00018841

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00013509

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00013511

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00018842

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00013515

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00018843

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.133    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00013512

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00013513

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00013514

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00018845

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00018846

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00018847

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00013516

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00013518

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00013519

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00013521

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00018848

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00018849

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00013522

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00013523

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00013524

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.143    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00013525

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.143    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00013526

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00013528

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00013527

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00013529

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00013530

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00013532

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00013533

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00018852

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00013534

Length=296


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00013535

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00018854

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00018853

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00013539

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00013536

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00018855

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00018856

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00013538

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00013537

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00018858

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.142    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00013542

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.113    0.320    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00013543

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.113    0.320    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00013544

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00013545

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00018859

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00013546

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00013548

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00018861

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00013551

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00013550

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00013552

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.142    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00018862

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00018863

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00018864

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00018865

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00013553

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00018866

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00013554

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00018867

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00018868

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00013556

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00013558

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00018869

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00013557

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00013559

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00013562

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00013563

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00018870

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00018871

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00018872

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00013564

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00013566

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00013565

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00013567

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00013568

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00018873

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00013569

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00013570

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.506    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00013571

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00013573

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00013572

Length=401


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00013575

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00018875

Length=350


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00013576

Length=401


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00013577

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00013579

Length=282


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00018877

Length=312


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00013580

Length=312


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00013581

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00013582

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00018878

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00018879

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00013583

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00013587

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00013585

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00018880

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00013584

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00013586

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00018881

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00013588

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00013589

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00013591

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00013592

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00013593

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00018882

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00018883

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00013596

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00013595

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00013597

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00013598

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00013600

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00013599

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00013601

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00013602

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00013603

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00013604

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00013605

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00013606

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00018884

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00013608

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00018885

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00013609

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00013612

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00013613

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00013614

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00018886

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00013615

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00013617

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00013618

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00013619

Length=24


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 79226976


Query= TCONS_00013621

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00013620

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00018888

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00013622

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00018889

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00018891

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00018890

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00013623

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00018892

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00013624

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00018894

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00013625

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00013626

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00013629

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00013627

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00018896

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00013630

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00018897

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00013631

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00018898

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00018899

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00013632

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00018900

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00013633

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00018901

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00013634

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00013636

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00013637

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00018903

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00013638

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00013639

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00013640

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00013641

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00018904

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00013642

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00013643

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00018905

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00013644

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00013645

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00018906

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00013646

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00013647

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00013648

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00013649

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00013651

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00013650

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00018908

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00018910

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00018909

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00018911

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00013653

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00013652

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00013654

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00013655

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00018912

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00013656

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.123    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00013658

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.344    0.152    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00018913

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.344    0.152    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00013657

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.344    0.152    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00013659

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00018914

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00013660

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00018915

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00013665

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00018916

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00013664

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00018918

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00018917

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00013661

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00013663

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00013662

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00013666

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00018920

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00018919

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00018921

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00018922

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00013667

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00013669

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00013668

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00013670

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00013671

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00013672

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00013673

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00018924

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00013676

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00013677

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00013680

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00018925

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00013679

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00013678

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00018926

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00018927

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00018929

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00018928

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00013681

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00018930

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00018931

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00018932

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00018934

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00018933

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00013682

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00013683

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00018935

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00018936

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00013684

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00013687

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00018937

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00018938

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00013688

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00013689

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00018939

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00018940

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00013691

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00013692

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00013693

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00013694

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00018941

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00013697

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.122    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00018943

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00013698

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00013699

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00018944

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00013702

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00018945

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.147    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00013704

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.110    0.289    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00018946

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00018947

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00013705

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00018948

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00018949

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00018950

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00013708

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00013709

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00013710

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00013706

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00013712

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00018951

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00013713

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00013714

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00013716

Length=226


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00013715

Length=226


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00013717

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00013718

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.537    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00013719

Length=244


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00013722

Length=244


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00013720

Length=244


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00013721

Length=244


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00013723

Length=244


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00018953

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00018954

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00018955

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00018956

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00013724

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00013726

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00013727

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00013729

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00013731

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00013732

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00018957

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00013733

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00018958

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00013734

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00018959

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00018960

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00018961

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00013735

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00013736

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.145    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00013737

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.145    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00018962

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.142    0.514    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00013738

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00013739

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00013740

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00013742

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00018963

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00013744

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00018964

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00013745

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00013746

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00013747

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00013749

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00018965

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00013748

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00013750

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00013751

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00013752

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.124    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00018966

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00018967

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00013800

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00018968

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00018969

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00013754

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00013755

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00018970

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00018971

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00018973

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.145    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00018974

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00013756

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00018975

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.129    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00018976

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00013759

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00013760

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00013758

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00018977

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00013757

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00018978

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.123    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00013762

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00013763

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00013764

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.120    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00013766

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00018980

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00013765

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00013768

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00013769

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00018981

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00013770

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00018982

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00013771

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00018983

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00013772

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00013774

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00013775

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00013773

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00013776

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00018984

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00018985

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00013777

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00013778

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00013779

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00013780

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00018986

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00018987

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00013782

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00013783

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00013784

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00013785

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00013787

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00013786

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00013788

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00018988

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00013789

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00013790

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00018990

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00013791

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00013792

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00013795

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00013793

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00013794

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00018992

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00013796

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00018993

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00013797

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00013799

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00013798

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00018994

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00013801

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.143    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00013802

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00018997

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00013803

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00018998

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00018999

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00013806

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00019002

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00019001

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00019000

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00013807

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00019003

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00013804

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00013805

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00019004

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00013808

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00013809

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00013810

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.339    0.152    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00013811

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00013812

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00019005

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00013813

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00019006

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00013814

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00013815

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00019007

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00013816

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00013817

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00013819

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00013820

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00013821

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00013822

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00013823

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00019009

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00013824

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00013818

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00019010

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00013825

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00019011

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.151    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00013831

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.151    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00013832

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00013829

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.151    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00019012

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00013828

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.151    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00013826

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00013827

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.151    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00019013

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.150    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00013830

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.150    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00019014

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.150    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00013833

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00013834

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.150    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00013836

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00013837

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.512    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00013839

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00013838

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00013840

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.122    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00013841

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00019015

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00013842

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.122    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00013843

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00013845

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.122    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00019016

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00019017

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00013846

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00019018

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00019019

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00013847

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.139    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00019020

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00013849

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00019021

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00019022

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00013850

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00019023

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00013851

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00013855

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00019024

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00019025

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00019026

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00013853

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00013852

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00013854

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00013856

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00013857

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00019027

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00013858

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00019029

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00019028

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00019030

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00013859

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00013860

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00019031

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00013861

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00019033

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00019032

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00013862

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00013863

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00013864

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00013865

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00013866

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00013867

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00013868

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00013869

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00019035

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00013870

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00019036

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00019037

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00013871

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00013873

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00013872

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00013884

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00013875

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00019038

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00013876

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00013877

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00013878

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00019039

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00013880

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00013879

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00013882

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00013883

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00013885

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00019040

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00013886

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00019041

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00019042

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00019043

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00013887

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00019044

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00013888

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00013889

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00013890

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00019045

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00013891

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00013892

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00019046

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00013895

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00013896

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00019050

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00013897

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00013898

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.145    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00013900

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.148    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00013899

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.150    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00019051

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.151    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00013902

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00013904

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00013903

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00019054

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00019055

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00019056

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00013905

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00013907

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00013908

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00013909

Length=215


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00013911

Length=215


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00013910

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00013912

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00013913

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00013914

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00013915

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00019057

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00013918

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00013917

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00013919

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00013921

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00013922

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00019058

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00013923

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00019059

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00019060

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00013924

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00013925

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00013927

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00013929

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.513    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00013931

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00019063

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00013932

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00013933

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00013934

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00013935

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00019064

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00019065

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00019066

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00019067

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00019068

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00019069

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00013936

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00013937

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00019070

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00013938

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00013939

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00019071

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00013940

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00013941

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00019072

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00013943

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00013942

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00013944

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00019073

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00013945

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00013946

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00013950

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00013947

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00013948

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00013949

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00013951

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00019074

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00013952

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00013953

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00013954

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00013955

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00013956

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00013957

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00013959

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00013958

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00013961

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00013960

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00013962

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00013963

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00013964

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00019075

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00013966

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00013965

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00019076

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00019077

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00019078

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00013967

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00013969

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00013968

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00013970

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00019079

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00019080

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00013971

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00019081

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00013973

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00019082

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00013972

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00013974

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00013976

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00013975

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00013977

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00013978

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00013979

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00013981

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00013980

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00019084

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00019083

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00013984

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00013983

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00013987

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00013986

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00013985

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00013989

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00013988

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00019085

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00013990

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00019086

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00013991

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00019087

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00019088

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00019089

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00019091

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00013992

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00019092

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00013993

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00019093

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00013994

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00019094

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00019096

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00019095

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00013995

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00013997

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00019097

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.143    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00019098

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00019099

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00019100

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00019101

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00013999

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00014000

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00019105

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00014001

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00019106

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00014002

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00014003

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00014004

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00014009

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00014008

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00014010

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00014007

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00019107

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00014006

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00014011

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00014012

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00014013

Length=21


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 69323604


Query= TCONS_00014014

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00014015

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00014016

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00014017

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00014018

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00014019

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00014020

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00014021

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00014022

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00014023

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00014024

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00019109

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00019111

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00019110

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00014025

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00014026

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00019113

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00014027

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00014028

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00014030

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.348    0.164    0.499    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00014032

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.120    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00014031

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.120    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00014033

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.120    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00014034

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.120    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00014035

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00019114

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00014037

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00014036

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00014038

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014039

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014041

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00014040

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00014042

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00014043

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014049

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00014051

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00014052

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00019115

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00019116

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00014053

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014054

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00014055

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00014059

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00014056

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00014057

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00019117

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00019118

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00014060

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00014061

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00014062

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00014063

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00014064

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00019121

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.147    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00019122

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00014066

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00014067

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00014065

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.147    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00014068

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.147    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00014069

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.147    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00014071

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00014070

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00019123

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.147    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00019124

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00019125

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00014073

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.147    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00014072

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.147    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00019126

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.147    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00019127

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00014074

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00014084

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00019128

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00019129

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.147    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00019130

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00019131

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.147    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00014075

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014077

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014076

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.147    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00014079

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014080

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00014081

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00019134

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00019133

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00019135

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00014083

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00019136

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00014078

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00014082

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00014086

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00014087

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00019138

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00019139

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00019140

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00014089

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00014088

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00014090

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00019141

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00014092

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.148    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00014093

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00014094

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00014095

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00014096

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00014097

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00014098

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00014099

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00014101

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00014100

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00014102

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00019142

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00014103

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00019143

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00014104

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00014106

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00014107

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00019144

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00014108

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00019146

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00019147

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00014109

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00019148

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00019149

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00014112

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00014113

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00014115

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00014122

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00019150

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00014117

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00014118

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00019151

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00014121

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00014119

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00014120

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00014123

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00019152

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00019153

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00014124

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00019154

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.121    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00019156

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00014126

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00019157

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00014127

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00019158

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00014131

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00014132

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00019160

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00019161

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00014133

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00019162

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00019163

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00014135

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00014134

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00014136

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00019165

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00019164

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00014138

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00014139

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00019166

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00014140

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00019167

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00019168

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00019169

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00019170

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00014143

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014144

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00014145

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00014147

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00014146

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00014148

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00014149

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00014150

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00019171

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00014152

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00019172

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00014154

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00019173

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00014153

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00014155

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00019174

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00014157

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00014156

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00014158

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00019175

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00014159

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00014160

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00014161

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00014162

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.145    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00014163

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00014164

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00014165

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00014166

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00019177

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00019178

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00019179

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.135    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00014167

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.135    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00014168

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.135    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00014169

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.135    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00014171

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.135    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00019182

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00014179

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00019185

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00014178

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00014174

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00014176

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00014175

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00014177

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00019186

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00014182

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00014183

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00019187

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00019188

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00014188

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00014185

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00014187

Length=212


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00019189

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00014186

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00019190

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00019191

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00019192

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00014190

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00014189

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00014191

Length=212


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00019193

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.143    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00019194

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.143    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00019195

Length=21


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 69323604


Query= TCONS_00014192

Length=21


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 69323604


Query= TCONS_00014193

Length=21


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 69323604


Query= TCONS_00014194

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00014195

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00019199

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00019200

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00014196

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00014197

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00019201

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00019203

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00014199

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00014200

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00014201

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00014202

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00019204

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00014203

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00019205

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00014204

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00014205

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00014206

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00019206

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00014207

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00014208

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.145    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00019207

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.145    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00014211

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00014209

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00014210

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00014212

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00014213

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00014215

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00019208

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00014216

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.141    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00014218

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00019209

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00014219

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00019211

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00014220

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00014221

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00019212

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00014223

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00014225

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00014226

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00014227

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00014229

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00014228

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00019213

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00019214

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00019216

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00019217

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014230

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014231

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014232

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014233

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00014235

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00014236

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00014237

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00014238

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00014243

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00014239

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00014240

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00014241

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00014242

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00019219

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00019218

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00014244

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00019220

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00019221

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00014245

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.147    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00014246

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00019222

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00019223

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00014247

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.118    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00014249

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00019224

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00014248

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.118    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00014250

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00019225

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00014251

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00019226

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00019227

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00019228

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00014252

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00019229

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00014253

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00014256

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00014255

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00014254

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00014258

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00014257

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00014259

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00014260

Length=21


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 69323604


Query= TCONS_00014261

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014262

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014263

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00014264

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014266

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014265

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00019230

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00019234

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014267

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014268

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014269

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014270

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00019236

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00014272

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.339    0.147    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00014273

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.339    0.147    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00014274

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00014275

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00019238

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.339    0.145    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00014276

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00019239

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00019241

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00019242

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00014277

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00014278

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00019243

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00014279

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00019244

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00014280

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00019245

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00014288

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00014281

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00014282

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00014283

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.125    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00019246

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00014284

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014285

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00014286

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00014287

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014289

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00019247

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00019248

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00019249

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00019250

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00014292

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00019252

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00019251

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00014290

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014291

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00014293

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00019253

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00014294

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00019254

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00014296

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00014295

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00014297

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00019255

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00014298

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00019256

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00014299

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00014300

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00014302

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00019257

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00014301

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00014304

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00014305

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00014308

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00014310

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00014307

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00014306

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00014309

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00019259

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00019260

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00019261

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00019262

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00014312

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00014311

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00019263

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00019264

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00014313

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00014314

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00014315

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.143    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00014316

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00019268

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00014317

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00014319

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00014318

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00019269

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00019270

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00014320

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00014321

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00014322

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00014324

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00019273

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00014323

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00019274

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00019275

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00019276

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00014326

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00014327

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00014328

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00014329

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00014330

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00014331

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00019277

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00019278

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00014332

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00014333

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00014334

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00019279

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00014335

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00014336

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00019280

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00014337

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00014339

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00014338

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00014340

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00014341

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00014342

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00019281

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00014343

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00014344

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00019282

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00019283

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00014345

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00014346

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00014348

Length=20


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.136    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 66022480


Query= TCONS_00019285

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00019284

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00019286

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00014350

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00014351

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00019287

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00019288

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.502    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00014352

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00014354

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00014355

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.124    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00014357

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00014356

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00019289

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00019290

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00014358

Length=271


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00019292

Length=271


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00014359

Length=248


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00019293

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00014360

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00014361

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00014362

Length=271


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00019294

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00014364

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00019295

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00019296

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.135    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00019297

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00014365

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.135    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00019298

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00014366

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00014367

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00019300

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00019301

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00019302

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00014368

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00014369

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00014370

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00014371

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00019303

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00014372

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00014374

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00014375

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00014376

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00014377

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00014378

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.145    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00019305

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00019306

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00019308

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00019307

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00014379

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00019309

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00014382

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00019311

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00014381

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00014383

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00014385

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00014386

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00019313

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00019314

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00014388

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00014387

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00014390

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00019315

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00014392

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00019316

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00019317

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00014393

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00014394

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00014395

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00014396

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00014398

Length=221


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00014397

Length=221


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00014400

Length=221


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00019318

Length=221


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00014401

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.120    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00019319

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00019320

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00014402

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00014404

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00014403

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.152    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00014407

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.152    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00019322

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.152    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00014405

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.152    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00014406

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00019324

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00014408

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00019325

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00014410

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00014412

Length=20


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 66022480


Query= TCONS_00014411

Length=20


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 66022480


Query= TCONS_00014413

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.149    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00014414

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00014415

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.149    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00014416

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.149    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00014417

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00019326

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00014418

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00019327

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00014420

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00014419

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00014421

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00019328

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00014422

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00014423

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00014424

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00019330

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00019329

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014427

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014426

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014428

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014425

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.127    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00014431

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014430

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.127    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00014429

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.127    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00019333

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00019332

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00014432

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00014433

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00019334

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00019335

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00014436

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00019336

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00014437

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00019337

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00014438

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00014441

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00019338

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00014442

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00014443

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00014446

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00014448

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00019339

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00014449

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00014450

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00019340

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00014451

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00014452

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00014454

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00014453

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00014455

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00014456

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00019341

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00019342

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00014457

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00014458

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00019343

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00019344

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00014460

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00014459

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00014461

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00019345

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00014462

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00014463

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00014464

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00014465

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00019346

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00014466

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00014467

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.118    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00014469

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.118    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00014468

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.118    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00019347

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.118    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00019348

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00014473

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00014474

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00014475

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00014476

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00014477

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00014478

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00019351

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00019352

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.528    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00014479

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00014480

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014481

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00019354

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00019353

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00019356

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00019357

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00014483

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00014485

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.124    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00014486

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00014487

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014488

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00014489

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.132    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00014490

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.122    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00014491

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.122    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00014492

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00019360

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.122    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00014493

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00019361

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00014494

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00019362

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00014496

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00014495

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00019363

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00019364

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00019365

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00014498

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00014497

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00014503

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00014500

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00014499

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00014501

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00014502

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00019367

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00014504

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00019368

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00019370

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00019369

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00019371

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00014511

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00014506

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00019372

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00014505

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00014507

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00019373

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00014508

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00014509

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.142    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00014512

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.135    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00014513

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00019374

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00014516

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00019375

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00019376

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00014517

Length=389


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00014518

Length=389


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00014521

Length=389


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00014520

Length=389


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00014519

Length=389


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00014524

Length=389


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00014523

Length=389


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00014522

Length=389


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00019377

Length=389


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00014525

Length=389


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00019378

Length=389


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00014526

Length=389


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00014527

Length=389


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00019379

Length=389


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00014528

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00019380

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00019381

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00019382

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00014529

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.121    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00014530

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.121    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00019384

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00019385

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00014531

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00014532

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.117    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00014533

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00014534

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00019386

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00014535

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00019388

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00019389

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00019390

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00014536

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00019391

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00014538

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00014540

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00014539

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00014543

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00019392

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00019393

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00014542

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00014541

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00014544

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00014546

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00014545

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00014549

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00014548

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00014547

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00014550

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00014551

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00014552

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00014554

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00014555

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00014557

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00014558

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.146    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00014559

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00014560

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00014561

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00019397

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00014564

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00014562

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00019398

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.142    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00019399

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00014567

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.142    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00014565

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00014566

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00014568

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00019400

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00019401

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00014570

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00019402

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00014572

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00019403

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00014571

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00014574

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00014575

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00014576

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00014577

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00014578

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00014579

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00019404

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00014580

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.146    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00014581

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.146    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00014582

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.146    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00019406

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.146    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00019407

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.146    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00014583

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.146    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00019408

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00014584

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00014585

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00019410

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00019409

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00019411

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00014586

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00019412

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00019413

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00014587

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00014588

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00019414

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00014590

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00014592

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00014591

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00019415

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00019416

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00014593

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00019417

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00019419

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00019418

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00019420

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00014594

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00014595

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00014596

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00019421

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00014597

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00014598

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00019422

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00014599

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00019423

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00014600

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00014601

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00019424

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00019425

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00019426

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00019427

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00014603

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00014605

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00019428

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00014606

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00014608

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00014609

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00014610

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00014611

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00014612

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00019431

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00019432

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.123    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00014613

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.146    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00014614

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00019433

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00014617

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014616

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014615

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014619

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00014621

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00019435

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00019434

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00019436

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00014620

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00014622

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00014623

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00014624

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00019437

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00014629

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00019438

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00014627

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00014628

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00014630

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00019440

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00014631

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00014632

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00014638

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00014635

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.506    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00014637

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00019441

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00014639

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.506    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00014640

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00014641

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00019443

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00019444

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00014642

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00014643

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00014644

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00014645

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.145    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00014646

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00019445

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00019446

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00019447

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00014647

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00014648

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00019448

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00019449

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00014651

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00014650

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00014649

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00014652

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00014653

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00014654

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00014656

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00014655

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00014657

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00014658

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00019450

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00014659

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00014663

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00019454

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00014666

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00019457

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00014670

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00019458

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00014672

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00014671

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00014674

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00014673

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00014675

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00014676

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014677

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014681

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.152    0.515    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00014682

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00014680

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.152    0.515    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00014679

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.152    0.515    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00019459

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.152    0.515    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00014683

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00014684

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00014685

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00014686

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00019460

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00014688

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00014689

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00019461

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00014690

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00014691

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00014692

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00014694

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00014695

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00014693

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00019462

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00019463

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00014696

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00019464

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00014697

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00019466

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00014698

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00014699

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.147    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00014701

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00019467

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00014702

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00014700

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00019468

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00014704

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00014703

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00014705

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00014706

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00019470

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00019471

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00019469

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00019472

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00014707

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00014708

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00014709

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00014712

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00014713

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00014714

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00014717

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.123    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00014716

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00014718

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00014720

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00014719

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00014721

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00019473

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00014723

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00014722

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00019474

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00019475

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00014729

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00014726

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00014724

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00014725

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00019476

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00019477

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00014728

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00014727

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00014730

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00014732

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00014731

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00019478

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00019479

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00019480

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00014733

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00014734

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00014736

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00014735

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00019481

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00019482

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00019483

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00014737

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00014738

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00019484

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00014742

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00014741

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00019485

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00014740

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00014743

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00014744

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00014745

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00014748

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00014750

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00014749

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00014751

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00019486

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00014752

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00014753

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00019487

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00019488

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00014754

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00014755

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00014756

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00014757

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00019489

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00019490

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00019491

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00014758

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00014759

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00014760

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00014761

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00014762

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014764

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014763

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014766

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014765

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014768

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.506    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00014769

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00014771

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00014772

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00014773

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00014774

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00019494

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00019495

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00014775

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00014776

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00014777

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00014780

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00014778

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00014779

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00014782

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00014783

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014785

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014784

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014787

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00014786

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00019496

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00019497

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00014788

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00014789

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00019498

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00014793

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00014791

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00014792

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00019500

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00019499

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00014795

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00019501

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00019502

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00019503

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00019504

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00019506

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00019505

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00014796

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00019507

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00014798

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.145    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00014799

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00014800

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00014801

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00014802

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00014803

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00014806

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00014805

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00014804

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00019508

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00014807

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00019509

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00019510

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00014811

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00014808

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00014809

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00014813

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00014812

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00014814

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00014815

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00014816

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00014818

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00014819

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00014820

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00019511

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00014821

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00014822

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00019512

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.125    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00019513

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.138    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00014823

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.125    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00014825

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.125    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00014824

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.138    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00014827

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00014828

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00019514

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00014829

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00014830

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00014831

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00014832

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00014833

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00014834

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00014835

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00014836

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00019515

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00019516

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00019517

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00014837

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00014838

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00019518

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00019520

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00014840

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00014841

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00019522

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00019523

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00014843

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00014842

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00014844

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00014845

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00019524

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00014846

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00014847

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00019525

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014848

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014849

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00019526

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00019527

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00014850

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00014852

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00014853

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00014854

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00019528

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00014856

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.137    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00014857

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00014858

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00014859

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00014860

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00014861

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00014862

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00019529

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00014863

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014864

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00014865

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00019530

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00019531

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014866

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00019532

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014867

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014868

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014869

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014870

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00014871

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00014872

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00019534

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00014873

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00019535

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00019536

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00019537

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00014874

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00019538

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00019539

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00019540

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00019541

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00014875

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00014876

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00014877

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00019542

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00014878

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00014881

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00014879

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00014880

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00014882

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00014883

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00019544

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00014884

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00014885

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00014886

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00014887

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00014889

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00014891

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00014890

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00014892

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00014893

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00014894

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00014895

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014896

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00014899

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00019548

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00014917

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00014916

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00019561

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00014918

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00014919

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00014920

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00014921

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00014924

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00014923

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00014922

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00014925

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00019563

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00014927

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00014926

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00019564

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00014928

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00019567

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00019566

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00019565

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00019568

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00019569

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00014930

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00014929

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00014931

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00014900

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00019549

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00019550

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00019551

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00014903

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00014904

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00014901

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00019553

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00014905

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00014906

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00019554

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00019555

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.125    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00014909

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.125    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00019556

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00014910

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00019557

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00019558

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.142    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00019559

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.342    0.139    0.600    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00014913

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.345    0.150    0.521    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00014914

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00019560

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00019570

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00014933

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00019571

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00014935

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00019572

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00014936

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00014937

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00014938

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00019573

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00019574

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00014941

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00019575

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00019576

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00014943

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00014942

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00014944

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00014945

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00014946

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00014947

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00019577

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00014948

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00014949

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00019578

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00019579

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00014950

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00014951

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00014952

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00019580

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00019581

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00019583

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00019582

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00014953

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00019584

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00019585

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00019586

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00014957

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00014955

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00014956

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00019587

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00014958

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00014965

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00014964

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00019588

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00014959

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00019589

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00014960

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00014962

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00014961

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00014963

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00014966

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00014967

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00014968

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00014969

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.148    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00014970

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00014971

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00014972

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00014974

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00014973

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00014975

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00014977

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.119    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00014976

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.119    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00019590

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00014978

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.119    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00019591

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00014979

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.346    0.160    0.569    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00019592

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.346    0.149    0.610    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00014980

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.346    0.149    0.610    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00019593

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.346    0.160    0.569    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00019594

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00014981

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00019595

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00014983

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00014985

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00014986

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00014987

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00014988

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00019597

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.122    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00019599

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00019598

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00019600

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00014989

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00014990

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00019601

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00019602

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00014991

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00014992

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00019603

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00014993

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00014994

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00014996

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00019604

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00019605

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00019606

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00014997

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00014998

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00014999

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00015000

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00015001

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00015002

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00019607

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00015009

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00019608

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00019610

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.502    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00015007

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.319    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00015003

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00015004

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.148    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00015005

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00015006

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.311    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00019611

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00019612

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00015008

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00019614

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.319    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00019613

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.311    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00019615

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.130    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00015010

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00015011

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.311    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00019616

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.319    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00015012

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00015013

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00019618

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00019619

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00015014

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00019620

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00015015

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00015016

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00015017

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00019622

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00019623

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00015018

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00019624

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00015019

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00015020

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00019626

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00019625

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00015021

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00015022

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00015023

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00015024

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00015025

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00015026

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00019627

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00015027

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00019628

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00015028

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00015029

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00015030

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00019629

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00019630

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00015031

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00019631

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00019633

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00015032

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00019634

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00019635

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00015033

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00015034

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00019636

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00019637

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00019638

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00015037

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.321    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00015039

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.321    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00015038

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.321    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00015040

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.321    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00019639

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00015041

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00015042

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00015046

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00015043

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00015044

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00019640

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00015045

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00019641

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00015047

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00015048

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00015050

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00015049

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00019642

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00015051

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00019643

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00019644

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00015054

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00015055

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00019647

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00015059

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00015058

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00015060

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00015061

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00019649

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00019650

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00015062

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00015064

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00015063

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00019651

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00015065

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00019652

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00015066

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00015067

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00015068

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00019654

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00015069

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00015070

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00015071

Length=248


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00015072

Length=248


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00019655

Length=248


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00019656

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00019657

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00015073

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00019658

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00019659

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00015079

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00015075

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00015076

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00015077

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00015078

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00015081

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00019660

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00015083

Length=197


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00019661

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00015084

Length=197


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00015085

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00019662

Length=197


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00015087

Length=197


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00015086

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00015088

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00015089

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00019664

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00019665

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00015091

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00015093

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00015094

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00015095

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00019666

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00019667

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00015096

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.129    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00019668

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.129    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00015097

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.129    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00019669

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.129    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00015099

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.153    0.530    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00015098

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.153    0.530    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00019670

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00015100

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00019671

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00015101

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00019672

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00015102

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00019673

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00015103

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00015104

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00015105

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00015106

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00015107

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00015108

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00019674

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00015109

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00019675

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00019676

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015110

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015111

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015112

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015113

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015114

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00019677

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015115

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00019678

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015116

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00019679

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00015118

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00015119

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00019681

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00019680

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00015122

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00015123

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00019682

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00015125

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00015124

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00015126

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00015128

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.123    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00015127

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00015129

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00015130

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00015131

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00019683

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00015132

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00019684

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00015134

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00015133

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00015135

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.143    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00019685

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00015137

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00015136

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00019686

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00015138

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00015141

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00015139

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00019687

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00019688

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00015140

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00015142

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00015143

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00015144

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00015145

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00015146

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00019690

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00019691

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00015147

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00019692

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00015149

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00019693

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00015150

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00015151

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00015152

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00015154

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00015153

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00015155

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00015156

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00015158

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00015157

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00019698

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00015161

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00015162

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00015163

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00019699

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00015164

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00015165

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00015166

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00019700

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00019701

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00015168

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00019702

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00019703

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00019704

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00015172

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00015170

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00019706

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00019705

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00015173

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00015174

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00019707

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00019708

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00019709

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00015175

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00019710

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00015176

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00015178

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00019711

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00015179

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015180

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015181

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015182

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00015183

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00015189

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.149    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00019713

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00019714

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00015191

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00015190

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00015193

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00019715

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00019716

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00015192

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00015194

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00015195

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00015196

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00015197

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00019717

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00019718

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00019719

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00015198

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00015185

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00015186

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00015187

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00015188

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00019721

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00019722

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00019723

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00015199

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00015200

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00015203

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00015201

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00015202

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00019724

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00019725

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00015206

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00019726

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00015209

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00015210

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00015211

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00015212

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00019727

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00015213

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00019728

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00015214

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00015215

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00015216

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00015217

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00015218

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00015219

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00019729

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00019730

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00015220

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00015221

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00019732

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00019733

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00015222

Length=208


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00019734

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00019735

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00019737

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00015223

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00015225

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00015226

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00015227

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00015228

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00015229

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00019738

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00015230

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00015231

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00015232

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00015233

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00019740

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.143    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00019741

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00015236

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00015238

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00019742

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015240

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015241

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015242

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00019743

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00015243

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00015244

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00015245

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.122    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00015246

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.122    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00015247

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00015248

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00015250

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00015249

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00019744

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00015251

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00015252

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00019746

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00015255

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00015256

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00015257

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00015258

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00015260

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00015259

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00015261

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00015262

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00019750

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00015263

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00019751

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00015264

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00019752

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015266

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00015267

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00019753

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00019755

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.493    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00019756

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00015274

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00019757

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00015275

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00019759

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00015276

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.118    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00015277

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.118    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00019760

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.118    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00015278

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00015279

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.118    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00015280

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00019761

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.118    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00015282

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.118    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00015283

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.118    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00019762

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00019763

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00015284

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00019764

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00015285

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00015286

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00019765

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00015287

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00019766

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00015289

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00015288

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00015290

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00019767

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.118    0.323    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00015292

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.120    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00015293

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.120    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00019768

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00015294

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00015297

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00015296

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00019769

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00015299

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00019770

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00015300

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00015302

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00015303

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00019771

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00015304

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00019774

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.120    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00019775

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00015308

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00015309

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00015310

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.145    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00015311

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00015312

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00015313

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00019778

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00019777

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00015315

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00019779

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00015314

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00015316

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00015317

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00015319

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00015318

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00015320

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00019782

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00015322

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00015323

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00015324

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.142    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00015325

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.142    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00015326

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00015327

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00015328

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00015329

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00019783

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00019784

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00015330

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00019785

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00019786

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00015331

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00019787

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00015333

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00015334

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00015336

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00015335

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00015337

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00015338

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00019788

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00019789

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00019790

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00015339

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00019792

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00015340

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00019793

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00015341

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00015342

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00015343

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00019795

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00019796

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.139    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00015344

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00019797

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00015345

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00015347

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00015348

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.139    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00019798

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00015349

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.139    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00019799

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00015350

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00015351

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00015352

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00015354

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00015353

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00019800

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00019801

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00015355

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00015356

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00019802

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00019803

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00015362

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00015358

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00015357

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00015361

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00015360

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00015365

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00015363

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00019804

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00019805

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00019806

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00015364

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00019807

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00015367

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.142    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00015369

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00015370

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00019808

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00019809

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00015374

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00015371

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00015378

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00015373

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00015375

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00015376

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00019810

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00015377

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00015372

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00019811

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00015382

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.143    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00015384

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.143    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00015387

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00019816

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.128    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00019817

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.339    0.148    0.534    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00015389

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00019818

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00019819

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00019820

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00019821

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00019822

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00015391

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00019823

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00019824

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00015392

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00015393

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00015395

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00015394

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00015396

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00015397

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00019825

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00019827

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00019826

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00019828

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00019829

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00019830

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00019831

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00019832

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00015398

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00019833

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00015399

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00015400

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00019834

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00015401

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00015402

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00015404

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00019835

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00015405

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00015406

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00015407

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00015408

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00015409

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00015410

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00019838

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00015411

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00019839

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.121    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00015416

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.121    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00015414

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.121    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00015413

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.121    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00019840

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.121    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00019841

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.121    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00015415

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.121    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00019842

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.123    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00019843

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00015417

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00015418

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.123    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00015419

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.123    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00019844

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00019845

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.123    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00015422

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00015420

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00015421

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00019846

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00015424

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00015423

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00015425

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00015426

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00015427

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00019847

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00015429

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00015428

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00019848

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00019849

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00019850

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00019851

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00015431

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00015433

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00019853

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00019854

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00019855

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00015435

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00015436

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00015438

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00015437

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00015439

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00019856

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00019857

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00015445

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00015448

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00015440

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00019858

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00015441

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00015444

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00015443

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00015442

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00019859

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00015446

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00015447

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00015450

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00015449

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00015457

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00015454

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.118    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00015453

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.118    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00015452

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.118    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00015455

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.118    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00019860

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.118    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00019861

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.118    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00015456

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.118    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00015458

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00015459

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00015460

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.132    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00015462

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.132    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00015461

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.132    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00019864

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00015463

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00019865

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00019866

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00015464

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00019867

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00015465

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00019868

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00015466

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00015467

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00015468

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00015469

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00019869

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00019871

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00019870

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00015471

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00019872

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00015473

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00015474

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00015476

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00015475

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00019875

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00019874

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00019873

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00019876

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00015477

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00015478

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00015480

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00015479

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00019877

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00015481

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00015483

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00015482

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00015484

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00015486

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00015485

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00015487

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00015488

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00019878

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00015489

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00015490

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.143    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00015491

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.147    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00019879

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00019880

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.123    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00019881

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00015492

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00015494

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00015493

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00019882

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.117    0.323    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00019883

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.117    0.323    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00015496

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.117    0.323    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00019884

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015497

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015501

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015499

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00015498

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00019885

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00019886

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00015500

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00015502

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00015503

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00015504

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00019887

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00019888

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00019889

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00015506

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00015511

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00015505

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00015509

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00015508

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00019890

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00019891

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00015510

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00019892

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00019893

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00015512

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00019894

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00015513

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00015516

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00015514

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00015517

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00015518

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00015519

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00015520

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.155    0.544    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00019895

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.134    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00015521

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.134    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00015522

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00015523

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.137    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00015524

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00015525

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00019897

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00015527

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00015528

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.145    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00015529

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.145    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00019900

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00019901

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00019902

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00019903

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00019904

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.123    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00019905

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00015530

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00019906

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00015531

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00019907

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00015532

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00015533

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00019908

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00019909

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00015534

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00015535

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00015536

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00015537

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00015538

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00015539

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.145    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00015540

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00019910

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00015543

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00015542

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00019911

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00019912

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00015544

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00015546

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00015545

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00019914

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00015547

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00015548

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00015549

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00015550

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00019915

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00015551

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00019916

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.344    0.157    0.563    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00015552

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00015553

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00019917

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00015554

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00015555

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00015556

Length=493


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00019918

Length=493


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00015557

Length=493


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00015558

Length=493


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00015559

Length=432


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00019919

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00015560

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00019920

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00015561

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00015562

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00015563

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00015564

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.145    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00019921

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.145    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00015565

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00015567

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00015566

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00015568

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00015569

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00015570

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00019922

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00015571

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00019923

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00015572

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00015573

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00015574

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.321    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00019926

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00015575

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00015576

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00015577

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00015579

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00019927

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00019928

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00015580

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00015581

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00019929

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00019930

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00019931

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00019933

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00019932

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00015583

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00015584

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00015585

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00019934

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00015586

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00019935

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00015588

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00019936

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00019937

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00015590

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00015591

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00019938

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00015593

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00015592

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00019939

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00019940

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00015595

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00015594

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00019941

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00015596

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00015597

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00019942

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00015598

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00015600

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00015601

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00015603

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.110    0.301    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00015602

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.110    0.301    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00015604

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00015606

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.110    0.301    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00015605

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.110    0.301    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00019946

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00019945

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00015608

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00015609

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00019947

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00015610

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00015611

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00019948

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00015612

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00015613

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00019950

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00019949

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00015614

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00019954

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00019955

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00019956

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00015617

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00015618

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00015619

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00015620

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00015621

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00015622

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00015624

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00015626

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00019959

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00019960

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00019961

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00015629

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00015628

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00015631

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00015630

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00015632

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00015633

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00019963

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00019964

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00015634

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.120    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00015635

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.120    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00015636

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.120    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00019965

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.120    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00015637

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00019966

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00015638

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.142    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00015641

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00019967

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00015646

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00019968

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00015644

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00015645

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00015647

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00015648

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00015650

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00015649

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00015651

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00015652

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00015653

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00015654

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00019969

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00019970

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00019971

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00015655

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00019972

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00015656

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00019974

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00015657

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00015658

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00015661

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00015660

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00015662

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00015663

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00019977

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00019978

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00015664

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015665

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00015666

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00019981

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00019982

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00019983

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00015672

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00015673

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00015674

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00019986

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00015677

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00015678

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00015679

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00015680

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00015681

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00015682

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00015683

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00015684

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00015685

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.126    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00015686

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.126    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00015689

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00015690

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00015691

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00015692

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00015693

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00015694

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00015695

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00019994

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00019995

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00019996

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00015697

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00019997

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.149    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00019999

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.144    0.563    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00020001

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.150    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00020002

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00015698

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015699

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015700

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015701

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00015702

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00015703

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00015704

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00015706

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00015705

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00020005

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00015707

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00015708

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00015709

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00020006

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00015711

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00015710

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00015712

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00015714

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00015715

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00015716

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00015717

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00015718

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00015719

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00015722

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00015720

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00015721

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00020009

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00015723

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00015724

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00020010

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00015725

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00015726

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00015727

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00015728

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00020011

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00020012

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00020013

Length=22


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 72624728


Query= TCONS_00015730

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00015731

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00015736

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00015732

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00015733

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00015734

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00015735

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00020014

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00015737

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00020016

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00015738

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00015739

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00015740

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00015741

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00015742

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00015744

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00015745

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00020017

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015747

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015746

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015748

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015749

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015750

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00020018

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00015751

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00020019

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00015752

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00015753

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00015754

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00015755

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00015756

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00015757

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00020020

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00020021

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00015758

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00015759

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00020022

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00015760

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00015761

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00020023

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00020024

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.149    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00020025

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00015762

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.149    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00015763

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00020026

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00020027

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00020028

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00015765

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00015764

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00020029

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00015767

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00015769

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00015770

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00015771

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.128    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00015772

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.128    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00015773

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00020030

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00015774

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00015775

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00015776

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00020031

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015777

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00015778

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00020032

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00015785

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.499    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00015782

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.499    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00015779

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.499    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00015780

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.499    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00015784

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.499    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00020033

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.499    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00015781

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.499    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00015783

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.499    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00020034

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.126    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00015787

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00020035

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00015788

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00015789

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00020037

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00020038

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.137    0.553    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00015791

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00015792

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00015793

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00015794

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00015795

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020039

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00015796

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00020041

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00020040

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00015798

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00015797

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00015799

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00020042

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00015800

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00020044

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00020043

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00015801

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00015802

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00015803

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.129    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00015804

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.129    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00015805

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.129    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00015806

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.129    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00015808

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.129    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00020046

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.129    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00015810

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00020047

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00015811

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00015813

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00015812

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00015814

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00015815

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00015816

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00015817

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00020048

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00015819

Length=271


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00015820

Length=271


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00015822

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00015821

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00015823

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00015825

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00015824

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00020049

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00015828

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00015827

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00015826

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00020050

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00015829

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00020051

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00020052

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00015832

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00015830

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00015831

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00015836

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00020053

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00015833

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00015834

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00015835

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00020054

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00020055

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00015838

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00015837

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00020056

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00015840

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00015839

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00020057

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00020058

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020060

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020061

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00015841

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020062

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020063

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00015842

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00015843

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00015844

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00020065

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00015846

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00015854

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015853

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00020066

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015848

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015847

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015850

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015849

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015851

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015852

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015857

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00020067

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00020068

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00020069

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00020070

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015855

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015856

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00020072

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00015859

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00015860

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00015862

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00015865

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00015861

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00020074

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00020073

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00015863

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00015864

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00015866

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00015868

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00015867

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00015874

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00015869

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00020075

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00020076

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00020077

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00015870

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00015871

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00015872

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00015873

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00020078

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00015875

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00015877

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00015876

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.139    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00015878

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00015879

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.145    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00015880

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00015881

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00015882

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00015883

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00015884

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00015886

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00015885

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00015887

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00020079

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00015888

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00015889

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00020080

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00015890

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00020081

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00020082

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00020083

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00020084

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00015891

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00015892

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00020085

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00020086

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00020087

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00015895

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00015894

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00015893

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00020088

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00020089

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00015900

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00015899

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00020090

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00015901

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00015902

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00015903

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00015905

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00020092

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00020093

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00020094

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00015906

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00020095

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.144    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00015909

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00020096

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00020097

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00015911

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.144    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00020098

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00020100

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00020101

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00015914

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00015915

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00020102

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00015916

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00015917

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00015918

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00020103

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00020104

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00015919

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00015920

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00020105

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00020106

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00020107

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00015922

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00015923

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00015924

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00015926

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00015925

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00020108

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00015927

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00015928

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.121    0.319    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00015929

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.121    0.319    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00020109

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00015931

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00015932

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00015933

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00020110

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00015934

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00015935

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00015936

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00015937

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00015938

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00015939

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00015940

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00015941

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00015944

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00015943

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00015946

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015945

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00020111

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015942

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015947

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00015948

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00020113

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00020112

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015950

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00015949

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00015951

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00020114

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00020116

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00015952

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00020118

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00020117

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00020119

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00020120

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00015954

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020121

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00020122

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00015955

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00015956

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00020123

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00015957

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00015958

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00015959

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.149    0.514    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00020126

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00020127

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00020128

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00015960

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00020129

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00015962

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00015961

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00020130

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.142    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00015963

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.123    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00015964

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00020131

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00020132

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00015965

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00020133

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00015967

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00015968

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00015969

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00015970

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00015971

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00015972

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00020134

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00020135

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00015973

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00020136

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.126    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00020137

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00015975

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00015976

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00015977

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00015978

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00020138

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00015979

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00015980

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00015981

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00015982

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.141    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00015983

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00020140

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00020139

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00015984

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00015985

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00015986

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00015987

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00015989

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00015991

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00015990

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00015993

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00015992

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00015994

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00015995

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00020142

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00015997

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015996

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015998

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00015999

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00020143

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00020145

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00020144

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00020146

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00016004

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00016001

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00016000

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00016002

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00020147

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00016005

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00016003

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00020148

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00016006

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00016007

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.154    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00016008

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00016010

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00020152

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00016009

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00016011

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00016012

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00020154

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00016014

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00016013

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00020155

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00016015

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00020156

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00016016

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00020159

Length=20


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.121    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 66022480


Query= TCONS_00016019

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.129    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00016020

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00016022

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00016023

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00016024

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00020160

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00020161

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00020162

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00020163

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00020164

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00016026

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00016027

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00016029

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00016028

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00016030

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00016031

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00016032

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00016034

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00016033

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00016035

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00020166

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00020165

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00020167

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00020168

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.146    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00016036

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.146    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00016038

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00020170

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00020171

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00016037

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00016039

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00016040

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00016041

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00020172

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00016042

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00020173

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00020174

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00020175

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00020176

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.121    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00016045

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00020177

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00016047

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00016049

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.125    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00016050

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00020178

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.125    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00016051

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00016052

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00016056

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00016057

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00020180

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00020179

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00016058

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00016059

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00016060

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00016061

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00020182

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00016062

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00016063

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00020183

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00020184

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00020186

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00016064

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00016065

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00016066

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00016068

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00016069

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00016067

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00016070

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00016071

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00016072

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00020187

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00020188

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00016073

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00016075

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00020189

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00016074

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00020190

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00020191

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00020192

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00020193

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00020195

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00020196

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00016078

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00016079

Length=322


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00016080

Length=322


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00020197

Length=21


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.130    0.510    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 69323604


Query= TCONS_00020198

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.125    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00016081

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00016082

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00020199

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00020200

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00016084

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00016087

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00016085

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00016086

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00016088

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00020201

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00020202

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00016089

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00016090

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00016091

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00016092

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.145    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00016096

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.147    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00016097

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00016098

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00016099

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00016100

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00020203

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00020204

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00020205

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00016101

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00016102

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00020206

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00016103

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00016104

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00016105

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00016106

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00020207

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00016107

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00016108

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00020208

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00020209

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00020211

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00016110

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00016109

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00016111

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.145    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00020212

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00020213

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00020214

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00020215

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00016115

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00016117

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00016116

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00020216

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00020217

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00016118

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00016121

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00016119

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00016120

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00016122

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00016123

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00016124

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00016126

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00016125

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00020219

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00016127

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00016129

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00016128

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00020221

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00016131

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00016130

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00016132

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00020223

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.145    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00020224

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00016133

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00016134

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00016136

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00016135

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00016138

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.119    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00016139

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00020227

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00020226

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00020228

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00016140

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00016141

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00016142

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00020229

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00016145

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00016143

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00016144

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00016146

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00020231

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.146    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00016148

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.146    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00016147

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.146    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00016149

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.146    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00016150

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00020233

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016158

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020234

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016153

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016152

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016151

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016154

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020235

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020236

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00020237

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020239

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020238

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020240

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016155

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00016156

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016157

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016165

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016159

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016161

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016160

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016162

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016163

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020241

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016164

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020242

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016166

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020243

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00020244

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00020245

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00016171

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00016167

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00016169

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00020246

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00016168

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00016170

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00020247

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00020248

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00020250

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00020249

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00016173

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.510    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00020251

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00016174

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.120    0.316    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00016177

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00016178

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00020253

Length=279


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00016179

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00020254

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00016181

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00016182

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00016190

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00016184

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00016183

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00016185

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00016186

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00016188

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00020255

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00020256

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00020258

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00020259

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00020257

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00016187

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00016189

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00020260

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00020261

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00016193

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00020262

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.130    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00016194

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00016195

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00020264

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00020263

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00016198

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00016197

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00016200

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00016199

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00020265

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00020266

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00020267

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00020269

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00020268

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00016201

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00016202

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.135    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00016203

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.134    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00016204

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00016206

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00016208

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00016210

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00016213

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00016212

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00016211

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00016216

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00016215

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00016214

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00016217

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00016218

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00016219

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00016220

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00020271

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00016221

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00020272

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00016222

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00016224

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00016223

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00020273

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00016225

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00016229

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00016226

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00016227

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00016228

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.122    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00016232

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.122    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00016230

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.116    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00020275

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.116    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00016231

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.122    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00020276

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.122    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00020278

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.116    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00020277

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.119    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00016234

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00016233

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00016235

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00016236

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00016237

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00020280

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00020279

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00020283

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00020282

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00020284

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00020286

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00020287

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00016238

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00016239

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00016240

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00020289

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00020288

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00020290

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.146    0.503    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00020292

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.154    0.544    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00020291

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.118    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00016243

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.154    0.544    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00016242

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00020293

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.154    0.544    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00016244

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.118    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00016245

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.154    0.544    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00016246

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.118    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00016247

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.118    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00016248

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.148    0.508    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00016249

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.148    0.508    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00020294

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016255

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016252

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016251

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016253

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016254

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016256

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016257

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016258

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00020296

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.125    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00016260

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.125    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00016261

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.125    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00016262

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00020297

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.145    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00016265

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00016263

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00020299

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00016264

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00016266

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016267

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016268

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016269

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00020300

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00020301

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016270

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00016271

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00020303

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00016272

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00020304

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00016273

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00016274

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00020305

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00020306

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00016278

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00020308

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00016279

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00020309

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00020310

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00016284

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00020311

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00016283

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00016282

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00020312

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00016286

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00016285

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00016287

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00016289

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00016288

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00016295

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00020313

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00016293

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00020314

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00016291

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00016290

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00020317

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00020316

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00020315

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00020318

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00020319

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00016292

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00016294

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00016296

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00016297

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00016298

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00016299

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00016300

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00020320

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00020321

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016302

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016301

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016303

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016305

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00016307

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00020322

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00016308

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00016309

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00016311

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00016312

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00020323

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00020325

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00020324

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00020326

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.145    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00020327

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00020329

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00016319

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00016317

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00016316

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00016315

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00016318

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00020330

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00020331

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00020332

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00016321

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00020333

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00020334

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00020335

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00016324

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00016325

Length=25


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.111    0.309    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82528100


Query= TCONS_00016327

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00016326

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00016328

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00020336

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00020337

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00016329

Length=212


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00016330

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00016331

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.143    0.527    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00016332

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00016333

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00016334

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00020338

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016336

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00020339

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016338

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00020341

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00020342

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00016340

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00016341

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00016342

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00016343

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00016344

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00016345

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00020343

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00020345

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00020344

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00016346

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00016347

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00020347

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00016348

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00020348

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00020349

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00016349

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00016350

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00016351

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00020350

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00016353

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00016352

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00020353

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00020352

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00020355

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00020356

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00020357

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00016356

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00016357

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00016359

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00016360

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00016361

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00016362

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00016367

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00016364

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00016363

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00016366

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00016368

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00016370

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00016369

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00020358

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00020359

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00020346

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00016372

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00016373

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00016374

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00016375

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00016376

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00020360

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00020361

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.148    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016379

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00016378

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00016377

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020362

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00016380

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020363

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016383

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00016382

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00020364

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00020365

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016384

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00020366

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00016381

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00016385

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00016386

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00020367

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020368

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00016388

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.518    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00016389

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00020369

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00020371

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00020370

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00016391

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016390

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00020372

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00020373

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00020375

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00020374

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00020376

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016392

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.118    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00016393

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00016394

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016395

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00020378

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00020377

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00020379

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016397

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016396

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016398

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016399

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00020380

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016401

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00020381

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.118    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00020382

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.118    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00020383

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016402

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00020384

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00020386

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00020385

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00016404

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00016406

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00016405

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00016407

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00020387

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00016408

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00016409

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00020388

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00016411

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00020389

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00016413

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00016415

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00020390

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00016416

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00016417

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00016418

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00020392

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00020393

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00016419

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00016420

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00016422

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00016421

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00020394

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00020396

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00020395

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00016423

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00016424

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00016425

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00020397

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00016426

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00016428

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00020398

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00020399

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00020400

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00016429

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00020401

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00020404

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00020405

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00016432

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00016433

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00016434

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00016435

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00016436

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00020406

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.145    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00020407

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00016438

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00020408

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00020409

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00020410

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00016443

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00016440

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00016441

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00016442

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00016444

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00016445

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00016447

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00016446

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00020411

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00020412

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00016448

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00016449

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00020413

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00016450

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00016451

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00016452

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00016453

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00016454

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00016455

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00016456

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00016457

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00016458

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00016460

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00016461

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00016462

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.149    0.524    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00016463

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.149    0.524    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00020415

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00016465

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00016466

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00016468

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00020416

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00016467

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00016469

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00016470

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00016472

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00016471

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00020417

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00020419

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00020418

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00016473

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.139    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00016474

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00016475

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00016476

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00016477

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00016478

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00020421

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00020422

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00016479

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.146    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00016480

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.146    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00016481

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00020423

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00016484

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00020425

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00020424

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00016485

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00020426

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00020427

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020428

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.123    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00016487

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00016488

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00016489

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00016491

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.123    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00016492

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00020430

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00020429

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00016493

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00020431

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00016494

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00020432

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00020433

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00020435

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00020434

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00016496

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00016495

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00020436

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00016499

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00016500

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00016501

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00020437

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00016502

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00020438

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00016503

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00016505

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00016506

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00016507

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00016508

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00016509

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00020439

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00020440

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00016510

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00020441

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00016511

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00020442

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00016513

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00016512

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00020443

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00016514

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00020444

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00016516

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00016515

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00020445

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00016518

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00016519

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00016520

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00016521

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00016522

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00016523

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00016524

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00016525

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00016526

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.149    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00020446

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00016528

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00016527

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00016529

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00016530

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00020447

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00020448

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00020449

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00020450

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00016531

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00020451

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00020452

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00016532

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00020453

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00016533

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00020454

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00016534

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00016535

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00016536

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00016537

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00016538

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.296    0.107    0.284    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00016539

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.296    0.107    0.284    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00016542

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00016543

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00020455

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00016544

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00016545

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00016546

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00016547

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00016548

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00016549

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00020459

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00016550

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00016551

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00020460

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00016553

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00016554

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00020461

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00016555

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00020463

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00020462

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00020465

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00016556

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00016557

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00016558

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00016565

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00016564

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00020466

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00016561

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00016560

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00016562

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00016563

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00020467

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00016566

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00020469

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00020468

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00016567

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00020470

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00016568

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00020471

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00020472

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00016576

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00016570

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00016571

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00016572

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00016573

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00016574

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00016575

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00020482

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00016587

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00020475

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00020476

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00016578

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00016577

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00016579

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00016580

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00020477

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00016583

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00016582

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00016581

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00020478

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00016584

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.118    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00016585

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00020479

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.118    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00016586

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00020480

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00020481

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00016588

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.125    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00020483

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00020484

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.128    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00020485

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.125    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00016590

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.125    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00016591

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00020488

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00020487

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00016592

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00020489

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00020490

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.116    0.321    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00016596

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00016597

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00020491

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00020492

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00016599

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00020493

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00016600

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00016598

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00020494

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00016601

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00020496

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.140    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00016602

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00016606

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00016603

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00016604

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00016605

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00016607

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00016608

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00016609

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00016610

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00016611

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00020497

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00020498

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00020499

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00016614

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00016617

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00016616

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00020500

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00016618

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00016619

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00016620

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00016621

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00020501

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00016622

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00020503

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00020505

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.298    0.111    0.310    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00020506

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00016623

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00020507

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00016624

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00016626

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.298    0.111    0.310    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00016627

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.298    0.111    0.310    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00016628

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00020511

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00020510

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00016630

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00020512

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00020513

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00020514

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00020516

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00020515

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00020518

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00020517

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00016634

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00016633

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00016632

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00020519

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00020520

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00020521

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00020523

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00020522

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00020524

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00016636

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016635

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016637

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00016638

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00016639

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00016640

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00016641

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00020525

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00020526

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00020527

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00016642

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00020529

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00016644

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016645

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00016646

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00020531

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.120    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00016647

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.136    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00016648

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.136    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00020532

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00020533

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00016651

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00016650

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00016649

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00016652

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00020534

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00020536

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00016653

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00016654

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00020537

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00020538

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00016655

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00016656

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00016657

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00020539

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00016659

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00016660

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00016661

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.148    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00016662

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00016665

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00016663

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00016664

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00016666

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00016667

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00020540

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00020541

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00020542

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00020543

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.150    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00016668

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.150    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00016669

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.150    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00020544

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.150    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00020545

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.150    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00016670

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.150    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00020546

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.150    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00016671

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.150    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00020548

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.150    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00020547

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.150    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00016673

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00016672

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00016674

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00020549

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00016675

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00016676

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00020551

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00020552

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00016677

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00016678

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00016679

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00016681

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.142    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00016682

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.142    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00016684

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00020554

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00016686

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00020555

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00016688

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00016687

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00016689

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00016691

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.126    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00016690

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.126    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00016693

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.126    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00016692

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.126    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00016694

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.126    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00020556

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.126    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00016695

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.126    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00016696

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.126    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00016697

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00016699

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00016698

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00020557

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00016701

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00016702

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00020558

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00020559

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00016703

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00016704

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00016705

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00016708

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00016709

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00016711

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00016712

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00020562

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00020563

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00016713

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00016714

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00016715

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00016716

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00020564

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00016717

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00020565

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00020566

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00016720

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00016719

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00016718

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00016721

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00020567

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00016722

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00016723

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00016724

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00016725

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00020568

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00016726

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00016727

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00020569

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00020570

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00016728

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00016730

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00016729

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00016731

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00016732

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00016733

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.138    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00016734

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00016735

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00016736

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00016737

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00020572

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00020573

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00020574

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00020575

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.138    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00016740

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00020577

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00020576

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00016741

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00020578

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00016743

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00016742

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00020579

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.118    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00020580

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00016745

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00016747

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.291    0.111    0.277    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00020583

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00020584

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00020585

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00020586

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00020587

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00016749

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00016748

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00020588

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00016750

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00020589

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00016751

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00016752

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00020590

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00020591

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00020592

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00016753

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00016754

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00020593

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00016755

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00020594

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00016756

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00020595

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00016757

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00016758

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00020596

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00020597

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00020598

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00016759

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00016761

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00016762

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00016763

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00016765

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00016764

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00020599

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00016766

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00020600

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00020601

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00016768

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00016770

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00016771

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00016772

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00016773

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00016774

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00020602

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00016776

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00016775

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00016778

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00016777

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00020603

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00016779

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00016780

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00016781

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00016782

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00020604

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00016783

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00020606

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.115    0.304    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00016785

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.144    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00016786

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.144    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00016787

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.120    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00016788

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.117    0.320    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016789

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00020608

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00020607

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00016790

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00020609

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00016792

Length=282


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00016791

Length=282


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00016793

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016795

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00016796

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.137    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00016798

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00016799

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00016801

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00016800

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00016803

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00016804

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00020610

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00020611

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00020612

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00020613

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00016806

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00016805

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00020614

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00020615

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00016807

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00020616

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00016808

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00020618

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00020617

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00016809

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00016810

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00016811

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00016812

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00016813

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00020621

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00020620

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00020622

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00016816

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00016815

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00016817

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00020624

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00016820

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00020625

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00016814

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00016818

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00016819

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00016821

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00020626

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00016822

Length=246


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.138    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00016823

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00020627

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00016824

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00016825

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00016826

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.120    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00016827

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.120    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00020629

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.120    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00016829

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00020630

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00016828

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00020631

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00016831

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00016830

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00016832

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00016834

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00016833

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00020633

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00020632

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00016835

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00020634

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00020635

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00016836

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00016837

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00016838

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00016840

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00020636

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00020637

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00020638

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00016843

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00016844

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00016845

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00016846

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00016848

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00016847

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00016849

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00016850

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00016851

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00020639

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00016853

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00016854

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00016856

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.128    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00016857

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00016858

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00016859

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00020642

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00016860

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.114    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0731    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00016861

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00020643

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00016862

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00016863

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00020644

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00016864

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.146    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00016865

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.142    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00016866

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00016867

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00016868

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00016869

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.117    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00016870

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.117    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00016873

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00016872

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00016871

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00016874

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00016875

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00016876

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00016878

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.148    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00020645

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00016879

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00016880

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00016881

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00020647

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00016882

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00020648

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.146    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00020649

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00016883

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.142    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00020650

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00016884

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00020651

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00016885

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.146    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00016886

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00016887

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00020652

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00020654

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00016889

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00020655

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00016890

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00016891

Length=117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403641 pfam12511, DUF3716, Protein of unknown function (DUF37...  60.8    2e-14


>CDD:403641 pfam12511, DUF3716, Protein of unknown function (DUF3716).  This 
domain family is found in eukaryotes, and is approximately 
60 amino acids in length.
Length=59

 Score = 60.8 bits (148),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 23/61 (38%), Positives = 31/61 (51%), Gaps = 4/61 (7%)

Query  30  VLLYTRGVEPDEPCKSCANGTGTFRHCIAAPAFLINEERRSLLVGACTNCVWKPKGSQCS  89
           +L+  RG E  EPC  C  G G F  C+  PA         +  GAC NC++  +GS+CS
Sbjct  2   LLIQVRGEEAPEPCTRCRRGRGPFAGCVVVPA----PPGPGVFGGACANCLYNGQGSRCS  57

Query  90  F  90
            
Sbjct  58  L  58



Lambda      K        H        a         alpha
   0.320    0.134    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00016892

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00020657

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.140    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00020658

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00016893

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00020659

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00020660

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00020661

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00020663

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.142    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00016897

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00016898

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.140    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00016899

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00016900

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00016901

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.148    0.519    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00016902

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00020665

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00016905

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00020666

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00020667

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00020668

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00020669

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00016906

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.130    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00016907

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00016908

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00020670

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.128    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00020671

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00016911

Length=22


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 72624728


Query= TCONS_00020673

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00016912

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.146    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00020674

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00020675

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.145    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00020676

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00020677

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.147    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00016914

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.147    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00016915

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00020678

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00020679

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00020680

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00020681

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00020682

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00016916

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00016917

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00016918

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00016919

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00020684

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00020685

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.523    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00016920

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00020686

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00016921

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00016922

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00020688

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00016923

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00020689

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  574     0.0  


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 574 bits (1482),  Expect = 0.0, Method: Composition-based stats.
 Identities = 216/464 (47%), Positives = 294/464 (63%), Gaps = 6/464 (1%)

Query  24   WVEAESQKRFDVTNPANGNVIGSCPESDAKDAQKAIDAAAAALPAWRSLSGRNRGRILRR  83
            WV++ES +  +V NPA G VI + P + A+D   AI AA AA PAWR      R  ILR+
Sbjct  1    WVDSES-ETIEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRK  59

Query  84   WYELVLENQEDLATLITMENGKAKPDAVGEVLFAASFLEWFSEEAARLYGDVVPHSQPNF  143
              +L+ E +++LA L T+ENGK   +A GEV  A   L +++  A RL G+ +P S P  
Sbjct  60   AADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLP-SDPGR  118

Query  144  RVSVLKEPIGVCGLITPWNFPAAMITRKLGPALAAGCTVVVKSAGETPFTANVLIKLSER  203
                 +EP+GV G ITPWNFP  +   K+ PALAAG TVV+K +  TP TA +L +L E 
Sbjct  119  LAYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEE  178

Query  204  AGIPAGVVNCVTALANTSKIGETLCLSNVVRKISFTGSTRVGKLLMQQSSSTLKKLSLEL  263
            AG+PAGV+N VT   + +++GE L     VRK+SFTGST VG+ + + ++  LK+++LEL
Sbjct  179  AGLPAGVLNVVTG--SGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLEL  236

Query  264  GGNAPFIVFEDADLGLAVDAAITSKFKSSGQTCVCSNRIFVQKRIYPEFIRRLKDAASRF  323
            GG  P IV EDADL  AV+AA+   F ++GQ C  ++R+ V + IY EF+ +L +AA + 
Sbjct  237  GGKNPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKL  296

Query  324  QVGNGLDEKTSHGPLITSAAVERVAGLVNDAVSRGAKIEIGGKKIPDLGPNFFEPTILTN  383
            +VG+ LD  T  GPLI+ A +ERV   V DA   GAK+  GG+   D G  F EPT+L N
Sbjct  297  KVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLDNG-YFVEPTVLAN  355

Query  384  VTTDMPVVNEEIFGPVAPIFSFDTEDEVVSASNACDVGLASYIFTQDVTRASRVSELLQS  443
            VT DM +  EEIFGPV  +  F  E+E +  +N  + GLA+ +FT D+ RA RV+  L++
Sbjct  356  VTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEA  415

Query  444  GMVAINTGIISDA-ASPFGGIKHSGMGREGSKYGIEDYLQLKTV  486
            GMV IN     DA   PFGG K SG GREG  YG+E+Y ++KTV
Sbjct  416  GMVWINDYTTGDADGLPFGGFKQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.317    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 617738928


Query= TCONS_00020690

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  113     3e-28


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 113 bits (286),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 158/419 (38%), Gaps = 48/419 (11%)

Query  51   RNVGWLGTVALMMKTQIGLGVLSIPSVFDTVGMIPGVILLCIVASIAAWTSYV-------  103
              +     V  ++   IG GVLS+P  F  +G IPG+ILL IV  I+ +T+++       
Sbjct  1    GTISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKE  60

Query  104  -------------VGVFKINHRQVYGIDDA---DWIFVAGSGILGISISLNAI-----SA  142
                         +G   +  +    I  A   +   V  S ++    +L AI       
Sbjct  61   VPVTGKRNKSYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDT  120

Query  143  HGACTAVYVAVAAIIGFFLASIRTLGKISWIAWLGLACILTAILIVTIGVGIQKRPSSVS  202
                   ++ +  +I   L+ I  L  +S ++ L     L  I+I+ + V        V 
Sbjct  121  CPISLVYFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSV----AEGIVL  176

Query  203  QVGPWSSDLRLINSPSFTDGVSAVSSLIFACSATPAYFSIAAEMRDPRFF---TRALIIS  259
                        N         A+  ++FA         I  EM++P  F   T+ L+ +
Sbjct  177  TAQGVGHLGSKTNI-KLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTA  235

Query  260  QIGSTLIYLVIGVVVYYYCGSHVASPALGSAGP-----IIKKISYGIALPGLLATTTIVI  314
             I +T++Y++IG+V Y   G +V    L +         I  +   +    ++ +  + +
Sbjct  236  IIIATVLYILIGLVGYLAFGDNVKGNILLNLPKSAWLIDIANLLLVLH---VILSFPLQL  292

Query  315  HLPSKYIFVRILRGSAHLTSNSI---IHWCTWLACTFGSTVIAYLIASGIPFFNNLVSLI  371
                + +   + R  A   ++           +    G  VI YLIA  +PFF +L+SL+
Sbjct  293  FPIRQIVENLLFRKEAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLV  352

Query  372  GAFLGVILAYQPTGCMWFYDNWRKRDTGNWKWILMACWNVFVILIGSFMTVAGTYGAIV  430
            GA     L++             K+ +    W      +V  I+IG  +   G  G I+
Sbjct  353  GATSCAPLSFILPPLFHLKLKKTKKKSQEKLWKPDIL-DVICIVIGLLLMAYGVAGLIL  410



Lambda      K        H        a         alpha
   0.325    0.139    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00020693

Length=530


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 664674974


Query= TCONS_00020692

Length=549


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00026207

Length=799


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1025882160


Query= TCONS_00020694

Length=780


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 998234272


Query= TCONS_00020691

Length=492


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00020695

Length=1274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1618881600


Query= TCONS_00020696

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  75.0    6e-18


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 75.0 bits (185),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 24/90 (27%), Positives = 43/90 (48%), Gaps = 2/90 (2%)

Query  2    DVFDQELITNYSSAVRLAKAFIPHLQRQSTAAIAFTTSQMALVPMKRCPNYGASKAALHH  61
            + +++ +  N +    L +A +P + + S   I   +S   LVP      Y ASKAA+  
Sbjct  99   EDWERVIDVNLTGVFNLTRAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIG  158

Query  62   FILALRTQLQDGPGNVKVIEIYPPAVQTEL  91
            F  +L  +L   P  ++V  + P  V T++
Sbjct  159  FTRSLALEL--APHGIRVNAVAPGGVDTDM  186



Lambda      K        H        a         alpha
   0.324    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00020697

Length=455


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00020698

Length=333


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00026208

Length=455


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00026209

Length=414


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00020699

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00020700

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00026210

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00020701

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00020702

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00020705

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00020703

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00026211

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00020704

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00020706

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         159     8e-46


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 159 bits (404),  Expect = 8e-46, Method: Composition-based stats.
 Identities = 86/274 (31%), Positives = 143/274 (52%), Gaps = 12/274 (4%)

Query  1    MLCPESPRWLIKNGREEEAVGVLARLHANGDKEDALVQLEIKEIRTAIEREVAQRKASFV  60
            +  PESPRWL++ GR EEA  VLA+L     +    V  E+ EI+ ++E      KAS+ 
Sbjct  189  LFLPESPRWLVEKGRLEEAREVLAKL-----RGVPDVDRELDEIKDSLEAGQEAEKASWK  243

Query  61   DFLRTRGNRRRLAVVVALACSLNWMGNGIITYFLSPILKSVGITSAVQITLINSGLALWN  120
            +   T+  R+RL + V L       G   I Y+ + I +++G++ +  +T+I   + + N
Sbjct  244  ELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTII---VGVVN  300

Query  121  LILAASAAVYC-DKAGRRPLFLTSVAGMLCSYVVVMGLSAGFANTKQSSLGIAVIPLLFI  179
              +    A++  D+ GRRPL L   AGM   +V+ +G+ A    +K    GI  I  + +
Sbjct  301  -FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVI-LGIVALLGVSKSDWAGIVAIVFIAL  358

Query  180  YFGFYDMAFTPLPIAYTVEILPFTIRSKGMALFTSTATMGNAFNQFVNPIALKAISWRY-  238
            +  F+ M + P+P     E+ P ++RSK MAL T+   + N    F+ PI   AI   Y 
Sbjct  359  FIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYT  418

Query  239  YAVYIAILLFYFCFIFFMFPETKRLSAEDAARVF  272
            + ++  +L+ +  F+FF  PETK  + E+   +F
Sbjct  419  FFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.325    0.138    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00020707

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         241     9e-75
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            69.4    2e-13


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 241 bits (616),  Expect = 9e-75, Method: Composition-based stats.
 Identities = 131/441 (30%), Positives = 212/441 (48%), Gaps = 21/441 (5%)

Query  30   GFQAMPSWQKYFKSPT--------GALLGIYAASYFLPSIFTAFIGDVISTKMGRRWCII  81
             F  +  + K F              L G+  + + +     +     +  + GR+  ++
Sbjct  21   AFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLGDRFGRKKSLL  80

Query  82   VANIIITIGCLVNTFA---SSVGMWCGGRAIIGAGVGIVKVAAPVLIQEISHPRLRPILG  138
            +AN++  IG ++   A    SV     GR ++G GVG   V AP+ I EI+  +LR  LG
Sbjct  81   IANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEIAPKKLRGALG  140

Query  139  SCYQTFAYIGIFFAAIMTFAGLYVPGDWGWRFPSLLQVIGPVAVIIVTMLCPESPRWLIK  198
            S YQ     GI  A I            GWR P  LQ++  + +II  +  PESPRWL++
Sbjct  141  SLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVE  200

Query  199  NGREEEAVGVLARLHANGDKEDALVQLEIKEIRTAIEREVAQRKASFVDFLRTRGNRRRL  258
             GR EEA  VLA+L     +    V  E+ EI+ ++E      KAS+ +   T+  R+RL
Sbjct  201  KGRLEEAREVLAKL-----RGVPDVDRELDEIKDSLEAGQEAEKASWKELFSTKTRRQRL  255

Query  259  AVVVALACSLNWMGNGIITYFLSPILKSVGITSAVQITLINSGLALWNLILAASAAVYCD  318
             + V L       G   I Y+ + I +++G++ +  +T+I   + + N +    A    D
Sbjct  256  LIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTII---VGVVNFVFTFIAIFLVD  312

Query  319  KAGRRPLFLTSVAGMLCSYVVVMGLSAGFANTKQSSLGIAVIPLLFIYFGFYDMAFTPLP  378
            + GRRPL L   AGM   + V++G+ A    +K    GI  I  + ++  F+ M + P+P
Sbjct  313  RFGRRPLLLLGAAGMAICF-VILGIVALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVP  371

Query  379  IAYTVEILPFTIRSKGMALFTSTATMGNAFNQFVNPIALKAISWRY-YAVYIAILLFYFC  437
                 E+ P ++RSK MAL T+   + N    F+ PI   AI   Y + ++  +L+ +  
Sbjct  372  WVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFII  431

Query  438  FIFFMFPETKRLSAEDAARVF  458
            F+FF  PETK  + E+   +F
Sbjct  432  FVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 69.4 bits (170),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 64/377 (17%), Positives = 125/377 (33%), Gaps = 53/377 (14%)

Query  33   AMPSWQKYFKSPTGALLGIYAASYFLPSIFTAFIGDVISTKMGRRWCIIVANIIITIGCL  92
            A+P         +   +G+    + L       +   +S + GRR  +++  ++  +G L
Sbjct  18   ALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLL  77

Query  93   VNTFASSVGMWCGGRAIIGAGVGIVKVAAPVLIQEISHPRLRPILGSCYQTFAYIGIFFA  152
            +  FASS+ +    R + G G G +  AA  LI +   P  R            +G    
Sbjct  78   LLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALG  137

Query  153  AIMTFAGLYVPGDWGWRFPSLLQ-VIGPVAVIIVTMLCPESPRWLIKNGREEEAVGVLAR  211
             +    G  +   +GWR   L+  ++  +A +++ +  P       K   E     ++A 
Sbjct  138  PL---LGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAW  194

Query  212  LHANGDKEDALVQLEIKEIRTAIEREVAQRKASFVDFLRTRGNRRRLAVVVALACSLNWM  271
                                                        R   + + LA  L   
Sbjct  195  KAL----------------------------------------LRDPVLWLLLALLLFGF  214

Query  272  GNGIITYFLSPILKSVGITSAVQITLINSGLALWNLILAASAAVYCDKAGRRPLFLTSVA  331
                +  +L    + +G+ SA+   L+     L   I         D+ GRR   L ++ 
Sbjct  215  AFFGLLTYLPLYQEVLGL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALL  273

Query  332  GMLCSYVVVMGLSAGFANTKQSSLGIAVIPLLFIYFGFYDMAFTPLPIAYTVEILPFTIR  391
             ++ + + ++ LS         +L    + L  +  GF      P   A   ++ P   R
Sbjct  274  LLILAALGLLLLS--------LTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEER  325

Query  392  SKGMALFTSTATMGNAF  408
                 L+ +  ++G A 
Sbjct  326  GTASGLYNTAGSLGGAL  342



Lambda      K        H        a         alpha
   0.327    0.140    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00020709

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         244     1e-75
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            71.7    4e-14


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 244 bits (624),  Expect = 1e-75, Method: Composition-based stats.
 Identities = 132/441 (30%), Positives = 213/441 (48%), Gaps = 21/441 (5%)

Query  50   GFQAMPSWQKYFKSPT--------GALLGIYAASYFLPSIFTAFIGDVISTKMGRRWCII  101
             F  +  + K F              L G+  + + +     +     +  + GR+  ++
Sbjct  21   AFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLGDRFGRKKSLL  80

Query  102  VANIIITIGCLVNTFA---SSVGMWCGGRAIIGAGVGIVKVAAPVLIQEISHPRLRPILG  158
            +AN++  IG ++   A    SV     GR ++G GVG   V AP+ I EI+  +LR  LG
Sbjct  81   IANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEIAPKKLRGALG  140

Query  159  SCYQTFAYIGIFFAAIMTFAGLYVPGDWGWRFPSLLQVIGPVAVIIVTMLCPESPRWLIK  218
            S YQ     GI  A I            GWR P  LQ++  + +II  +  PESPRWL++
Sbjct  141  SLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVE  200

Query  219  NGREEEAVGVLARLHANGDKEDALVQLEIKEIRTAIEREVAQRKASFVDFLRTRGNRRRL  278
             GR EEA  VLA+L     +    V  E+ EI+ ++E      KAS+ +   T+  R+RL
Sbjct  201  KGRLEEAREVLAKL-----RGVPDVDRELDEIKDSLEAGQEAEKASWKELFSTKTRRQRL  255

Query  279  AVVVALACSLNWMGNGIITYFLSPILKSVGITSAVQITLINSGLGLWNLILAASAAVYCD  338
             + V L       G   I Y+ + I +++G++ +  +T+I   +G+ N +    A    D
Sbjct  256  LIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTII---VGVVNFVFTFIAIFLVD  312

Query  339  KAGRRPLFLTSVAGMLCSYVVVMGLSAGFANTKQSSLGIAVIPLLFIYFGFYDMAFTPLP  398
            + GRRPL L   AGM   + V++G+ A    +K    GI  I  + ++  F+ M + P+P
Sbjct  313  RFGRRPLLLLGAAGMAICF-VILGIVALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVP  371

Query  399  IAYTVEILPFTIRSKGMALFTSTATMGNAFNQFVNPIALKAISWRY-YAVYIAILLFYFC  457
                 E+ P ++RSK MAL T+   + N    F+ PI   AI   Y + ++  +L+ +  
Sbjct  372  WVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFII  431

Query  458  FIFFMFPETKRLSAEDAARVF  478
            F+FF  PETK  + E+   +F
Sbjct  432  FVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 71.7 bits (176),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 67/394 (17%), Positives = 130/394 (33%), Gaps = 53/394 (13%)

Query  36   LVIATNVNQASLLTGFQAMPSWQKYFKSPTGALLGIYAASYFLPSIFTAFIGDVISTKMG  95
            L +A  +          A+P         +   +G+    + L       +   +S + G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  96   RRWCIIVANIIITIGCLVNTFASSVGMWCGGRAIIGAGVGIVKVAAPVLIQEISHPRLRP  155
            RR  +++  ++  +G L+  FASS+ +    R + G G G +  AA  LI +   P  R 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  156  ILGSCYQTFAYIGIFFAAIMTFAGLYVPGDWGWRFPSLLQ-VIGPVAVIIVTMLCPESPR  214
                       +G     +    G  +   +GWR   L+  ++  +A +++ +  P    
Sbjct  121  RALGLVSAGFGLGAALGPL---LGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  215  WLIKNGREEEAVGVLARLHANGDKEDALVQLEIKEIRTAIEREVAQRKASFVDFLRTRGN  274
               K   E     ++A                                            
Sbjct  178  KRPKPAEEARLSLIVAWKAL----------------------------------------  197

Query  275  RRRLAVVVALACSLNWMGNGIITYFLSPILKSVGITSAVQITLINSGLGLWNLILAASAA  334
             R   + + LA  L       +  +L    + +G+ SA+   L+    GL   I      
Sbjct  198  LRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGL-SALLAGLLLGLGGLLGAIGRLLLG  256

Query  335  VYCDKAGRRPLFLTSVAGMLCSYVVVMGLSAGFANTKQSSLGIAVIPLLFIYFGFYDMAF  394
               D+ GRR   L ++  ++ + + ++ LS         +L    + L  +  GF     
Sbjct  257  RLSDRLGRRRRLLLALLLLILAALGLLLLS--------LTLSSLWLLLALLLLGFGFGLV  308

Query  395  TPLPIAYTVEILPFTIRSKGMALFTSTATMGNAF  428
             P   A   ++ P   R     L+ +  ++G A 
Sbjct  309  FPALNALVSDLAPKEERGTASGLYNTAGSLGGAL  342



Lambda      K        H        a         alpha
   0.326    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00020708

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         168     3e-49


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 168 bits (428),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 132/280 (47%), Gaps = 16/280 (6%)

Query  50   GFQAMPSWQKYFKSPT--------GALLGIYAASYFLPSIFTAFIGDVISTKMGRRWCII  101
             F  +  + K F              L G+  + + +     +     +  + GR+  ++
Sbjct  21   AFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLGDRFGRKKSLL  80

Query  102  VANIIITIGCLVNTFA---SSVGMWCGGRAIIGAGVGIVKVAAPVLIQEISHPRLRPILG  158
            +AN++  IG ++   A    SV     GR ++G GVG   V AP+ I EI+  +LR  LG
Sbjct  81   IANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEIAPKKLRGALG  140

Query  159  SCYQTFAYIGIFFAAIMTFAGLYVPGDWGWRFPSLLQVIGPVAVIIVTMLCPESPRWLIK  218
            S YQ     GI  A I            GWR P  LQ++  + +II  +  PESPRWL++
Sbjct  141  SLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVE  200

Query  219  NGREEEAVGVLARLHANGDKEDALVQLEIKEIRTAIEREVAQRKASFVDFLRTRGNRRRL  278
             GR EEA  VLA+L     +    V  E+ EI+ ++E      KAS+ +   T+  R+RL
Sbjct  201  KGRLEEAREVLAKL-----RGVPDVDRELDEIKDSLEAGQEAEKASWKELFSTKTRRQRL  255

Query  279  AVVVALACSLNWMGNGIITYFLSPILKSVGITSAVQITLI  318
             + V L       G   I Y+ + I +++G++ +  +T+I
Sbjct  256  LIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTII  295



Lambda      K        H        a         alpha
   0.326    0.140    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 379043084


Query= TCONS_00026212

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         236     3e-73
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            69.0    3e-13


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 236 bits (605),  Expect = 3e-73, Method: Composition-based stats.
 Identities = 131/435 (30%), Positives = 211/435 (49%), Gaps = 21/435 (5%)

Query  17   DFVRYFKSPT--------GALLGIYAASYFLPSIFTAFIGDVISTKMGRRWCIIVANIII  68
            DF + F              L G+  + + +     +     +  + GR+  +++AN++ 
Sbjct  27   DFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLF  86

Query  69   TIGCLVNTFA---SSVGMWCGGRAIIGAGVGIVKVAAPVLIQEISHPRLRPILGSCYQTF  125
             IG ++   A    SV     GR ++G GVG   V AP+ I EI+  +LR  LGS YQ  
Sbjct  87   VIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLA  146

Query  126  AYIGIFFAAIMTFAGLYVPGDWGWRFPSLLQVIGPVAVIIVTMLCPESPRWLIKNGREEE  185
               GI  A I            GWR P  LQ++  + +II  +  PESPRWL++ GR EE
Sbjct  147  ITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEE  206

Query  186  AVGVLARLHANGDKEDALVQLEIKEIRTAIEREVAQRKASFVDFLRTRGNRRRLAVVVAL  245
            A  VLA+L     +    V  E+ EI+ ++E      KAS+ +   T+  R+RL + V L
Sbjct  207  AREVLAKL-----RGVPDVDRELDEIKDSLEAGQEAEKASWKELFSTKTRRQRLLIGVML  261

Query  246  ACSLNWMGNGIITYFLSPILKSVGITSAVQITLINSGLALWNLILAASAAVYCDKAGRRP  305
                   G   I Y+ + I +++G++ +  +T+I   + + N +    A    D+ GRRP
Sbjct  262  QIFQQLTGINAIFYYSTTIFENLGLSDSFLVTII---VGVVNFVFTFIAIFLVDRFGRRP  318

Query  306  LFLTSVAGMLCSYVVVMGLSAGFANTKQSSLGIAVIPLLFIYFGFYDMAFTPLPIAYTVE  365
            L L   AGM   + V++G+ A    +K    GI  I  + ++  F+ M + P+P     E
Sbjct  319  LLLLGAAGMAICF-VILGIVALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSE  377

Query  366  ILPFTIRSKGMALFTSTATMGNAFNQFVNPIALKAISWRY-YAVYIAILLFYFCFIFFMF  424
            + P ++RSK MAL T+   + N    F+ PI   AI   Y + ++  +L+ +  F+FF  
Sbjct  378  LFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFV  437

Query  425  PETKRLSAEDAARVF  439
            PETK  + E+   +F
Sbjct  438  PETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 69.0 bits (169),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 62/365 (17%), Positives = 122/365 (33%), Gaps = 53/365 (15%)

Query  26   TGALLGIYAASYFLPSIFTAFIGDVISTKMGRRWCIIVANIIITIGCLVNTFASSVGMWC  85
            +   +G+    + L       +   +S + GRR  +++  ++  +G L+  FASS+ +  
Sbjct  30   SPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLL  89

Query  86   GGRAIIGAGVGIVKVAAPVLIQEISHPRLRPILGSCYQTFAYIGIFFAAIMTFAGLYVPG  145
              R + G G G +  AA  LI +   P  R            +G     +    G  +  
Sbjct  90   VLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPL---LGGLLAS  146

Query  146  DWGWRFPSLLQ-VIGPVAVIIVTMLCPESPRWLIKNGREEEAVGVLARLHANGDKEDALV  204
             +GWR   L+  ++  +A +++ +  P       K   E     ++A             
Sbjct  147  LFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKAL---------  197

Query  205  QLEIKEIRTAIEREVAQRKASFVDFLRTRGNRRRLAVVVALACSLNWMGNGIITYFLSPI  264
                                            R   + + LA  L       +  +L   
Sbjct  198  -------------------------------LRDPVLWLLLALLLFGFAFFGLLTYLPLY  226

Query  265  LKSVGITSAVQITLINSGLALWNLILAASAAVYCDKAGRRPLFLTSVAGMLCSYVVVMGL  324
             + +G+ SA+   L+     L   I         D+ GRR   L ++  ++ + + ++ L
Sbjct  227  QEVLGL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLL  285

Query  325  SAGFANTKQSSLGIAVIPLLFIYFGFYDMAFTPLPIAYTVEILPFTIRSKGMALFTSTAT  384
            S         +L    + L  +  GF      P   A   ++ P   R     L+ +  +
Sbjct  286  S--------LTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAGS  337

Query  385  MGNAF  389
            +G A 
Sbjct  338  LGGAL  342



Lambda      K        H        a         alpha
   0.328    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00026213

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         103     1e-26


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 103 bits (260),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query  29   LLGIYAASYFLPSIFTAFIGDVISTKMGRRWCIIVANIIITIGCLVNTFA---SSVGMWC  85
            L G+  + + +     +     +  + GR+  +++AN++  IG ++   A    SV    
Sbjct  47   LSGLIVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLI  106

Query  86   GGRAIIGAGVGIVKVAAPVLIQEISHPRLRPILGSCYQTFAYIGIFFAAIMTFAGLYVPG  145
             GR ++G GVG   V AP+ I EI+  +LR  LGS YQ     GI  A I          
Sbjct  107  VGRVLVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSN  166

Query  146  DWGWRFPSLLQVIGPVAVIIVTMLCPESPR  175
              GWR P  LQ++  + +II  +  PESPR
Sbjct  167  SDGWRIPLGLQLVPALLLIIGLLFLPESPR  196



Lambda      K        H        a         alpha
   0.330    0.143    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00020710

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         141     3e-39


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 141 bits (357),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 81/266 (30%), Positives = 137/266 (52%), Gaps = 12/266 (5%)

Query  5    WLIKNGREEEAVGVLARLHANGDKEDALVQLEIKEIRTAIEREVAQRKASFVDFLRTRGN  64
            WL++ GR EEA  VLA+L     +    V  E+ EI+ ++E      KAS+ +   T+  
Sbjct  197  WLVEKGRLEEAREVLAKL-----RGVPDVDRELDEIKDSLEAGQEAEKASWKELFSTKTR  251

Query  65   RRRLAVVVALACSLNWMGNGIITYFLSPILKSVGITSAVQITLINSGLALWNLILAASAA  124
            R+RL + V L       G   I Y+ + I +++G++ +  +T+I   + + N  +    A
Sbjct  252  RQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTII---VGVVN-FVFTFIA  307

Query  125  VYC-DKAGRRPLFLTSVAGMLCSYVVVMGLSAGFANTKQSSLGIAVIPLLFIYFGFYDMA  183
            ++  D+ GRRPL L   AGM   +V+ +G+ A    +K    GI  I  + ++  F+ M 
Sbjct  308  IFLVDRFGRRPLLLLGAAGMAICFVI-LGIVALLGVSKSDWAGIVAIVFIALFIAFFAMG  366

Query  184  FTPLPIAYTVEILPFTIRSKGMALFTSTATMGNAFNQFVNPIALKAISWRY-YAVYIAIL  242
            + P+P     E+ P ++RSK MAL T+   + N    F+ PI   AI   Y + ++  +L
Sbjct  367  WGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLL  426

Query  243  LFYFCFIFFMFPETKRLSAEDAARVF  268
            + +  F+FF  PETK  + E+   +F
Sbjct  427  VLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.326    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00020711

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         75.0    6e-17


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 75.0 bits (185),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query  30   GFQAMPSWQKYFKSPT--------GALLGIYAASYFLPSIFTAFIGDVISTKMGRRWCII  81
             F  +  + K F              L G+  + + +     +     +  + GR+  ++
Sbjct  21   AFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLGDRFGRKKSLL  80

Query  82   VANIIITIGCLVNTFA---SSVGMWCGGRAIIGAGVGIVKVAAPVLIQEISHPRLRPILG  138
            +AN++  IG ++   A    SV     GR ++G GVG   V AP+ I EI+  +LR  LG
Sbjct  81   IANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEIAPKKLRGALG  140

Query  139  SCYQTFAYIGIFFAAI  154
            S YQ     GI  A I
Sbjct  141  SLYQLAITFGILLAYI  156



Lambda      K        H        a         alpha
   0.329    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00026214

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         223     9e-69
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            64.4    8e-12


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 223 bits (571),  Expect = 9e-69, Method: Composition-based stats.
 Identities = 122/406 (30%), Positives = 192/406 (47%), Gaps = 14/406 (3%)

Query  42   VNQASLLTGFQAMPSWQKYVKS--PTGALLGIYAASYFLPSIFTAFIGDVISTKMGRRWC  99
            +     L  F       K V S      L G+  + + +     +     +  + GR+  
Sbjct  19   IGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLGDRFGRKKS  78

Query  100  IIVANIIITIGCLVNTFA---SSVGMWCGGRAIIGAGVGIVKVAAPVLIQEISHPRLRPI  156
            +++AN++  IG ++   A    SV     GR ++G GVG   V AP+ I EI+  +LR  
Sbjct  79   LLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEIAPKKLRGA  138

Query  157  LGSCYQTFAYIGIFFAAIMTFAGLYVPGDWGWRFPSLLQVIGPVAVIIVTMLCPESPRWL  216
            LGS YQ     GI  A I            GWR P  LQ++  + +II  +  PESPRWL
Sbjct  139  LGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLLFLPESPRWL  198

Query  217  IKNGREEEAVGVLARLHANGDKEDALVQLEIKEIRTAIEREVAQRKASFVDFLRTRGNRR  276
            ++ GR EEA  VLA+L     +    V  E+ EI+ ++E      KAS+ +   T+  R+
Sbjct  199  VEKGRLEEAREVLAKL-----RGVPDVDRELDEIKDSLEAGQEAEKASWKELFSTKTRRQ  253

Query  277  RLAVVVALACSLNWMGNGIITYFLSPILKSVGITSAVQITLINSGLALWNLILAASAAVY  336
            RL + V L       G   I Y+ + I +++G++ +  +T+I   + + N +    A   
Sbjct  254  RLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTII---VGVVNFVFTFIAIFL  310

Query  337  CDKAGRRPLFLTSVAGMLCSYVVVMGLSAGFANTKQSSLGIAVIPLLFIYFGFYDMAFTP  396
             D+ GRRPL L   AGM   + V++G+ A    +K    GI  I  + ++  F+ M + P
Sbjct  311  VDRFGRRPLLLLGAAGMAICF-VILGIVALLGVSKSDWAGIVAIVFIALFIAFFAMGWGP  369

Query  397  LPIAYTVEILPFTIRSKGMALFTSTATMGNAFNQFVNPIALKAISW  442
            +P     E+ P ++RSK MAL T+   + N    F+ PI   AI  
Sbjct  370  VPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGL  415


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 64.4 bits (157),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 66/394 (17%), Positives = 129/394 (33%), Gaps = 53/394 (13%)

Query  36   LVIATNVNQASLLTGFQAMPSWQKYVKSPTGALLGIYAASYFLPSIFTAFIGDVISTKMG  95
            L +A  +          A+P         +   +G+    + L       +   +S + G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  96   RRWCIIVANIIITIGCLVNTFASSVGMWCGGRAIIGAGVGIVKVAAPVLIQEISHPRLRP  155
            RR  +++  ++  +G L+  FASS+ +    R + G G G +  AA  LI +   P  R 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  156  ILGSCYQTFAYIGIFFAAIMTFAGLYVPGDWGWRFPSLLQ-VIGPVAVIIVTMLCPESPR  214
                       +G     +    G  +   +GWR   L+  ++  +A +++ +  P    
Sbjct  121  RALGLVSAGFGLGAALGPL---LGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  215  WLIKNGREEEAVGVLARLHANGDKEDALVQLEIKEIRTAIEREVAQRKASFVDFLRTRGN  274
               K   E     ++A                                            
Sbjct  178  KRPKPAEEARLSLIVAWKAL----------------------------------------  197

Query  275  RRRLAVVVALACSLNWMGNGIITYFLSPILKSVGITSAVQITLINSGLALWNLILAASAA  334
             R   + + LA  L       +  +L    + +G+ SA+   L+     L   I      
Sbjct  198  LRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGL-SALLAGLLLGLGGLLGAIGRLLLG  256

Query  335  VYCDKAGRRPLFLTSVAGMLCSYVVVMGLSAGFANTKQSSLGIAVIPLLFIYFGFYDMAF  394
               D+ GRR   L ++  ++ + + ++ LS         +L    + L  +  GF     
Sbjct  257  RLSDRLGRRRRLLLALLLLILAALGLLLLS--------LTLSSLWLLLALLLLGFGFGLV  308

Query  395  TPLPIAYTVEILPFTIRSKGMALFTSTATMGNAF  428
             P   A   ++ P   R     L+ +  ++G A 
Sbjct  309  FPALNALVSDLAPKEERGTASGLYNTAGSLGGAL  342



Lambda      K        H        a         alpha
   0.327    0.140    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00020712

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         242     5e-75
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            71.3    5e-14


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 242 bits (620),  Expect = 5e-75, Method: Composition-based stats.
 Identities = 131/441 (30%), Positives = 212/441 (48%), Gaps = 21/441 (5%)

Query  50   GFQAMPSWQKYFKSPT--------GALLGIYAASYFLPSIFTAFIGDVISTKMGRRWCII  101
             F  +  + K F              L G+  + + +     +     +  + GR+  ++
Sbjct  21   AFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLGDRFGRKKSLL  80

Query  102  VANIIITIGCLVNTFA---SSVGMWCGGRAIIGAGVGIVKVAAPVLIQEISHPRLRPILG  158
            +AN++  IG ++   A    SV     GR ++G GVG   V AP+ I EI+  +LR  LG
Sbjct  81   IANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEIAPKKLRGALG  140

Query  159  SCYQTFAYIGIFFAAIMTFAGLYVPGDWGWRFPSLLQVIGPVAVIIVTMLCPESPRWLIK  218
            S YQ     GI  A I            GWR P  LQ++  + +II  +  PESPRWL++
Sbjct  141  SLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVE  200

Query  219  NGREEEAVGVLARLHANGDKEDALVQLEIKEIRTAIEREVAQRKASFVDFLRTRGNRRRL  278
             GR EEA  VLA+L     +    V  E+ EI+ ++E      KAS+ +   T+  R+RL
Sbjct  201  KGRLEEAREVLAKL-----RGVPDVDRELDEIKDSLEAGQEAEKASWKELFSTKTRRQRL  255

Query  279  AVVVALACSLNWMGNGIITYFLSPILKSVGITSAVQITLINSGLALWNLILAASAAVYCD  338
             + V L       G   I Y+ + I +++G++ +  +T+I   + + N +    A    D
Sbjct  256  LIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTII---VGVVNFVFTFIAIFLVD  312

Query  339  KAGRRPLFLTSVAGMLCSYVVVMGLSAGFANTKQSSLGIAVIPLLFIYFGFYDMAFTPLP  398
            + GRRPL L   AGM   + V++G+ A    +K    GI  I  + ++  F+ M + P+P
Sbjct  313  RFGRRPLLLLGAAGMAICF-VILGIVALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVP  371

Query  399  IAYTVEILPFTIRSKGMALFTSTATMGNAFNQFVNPIALKAISWRY-YAVYIAILLFYFC  457
                 E+ P ++RSK MAL T+   + N    F+ PI   AI   Y + ++  +L+ +  
Sbjct  372  WVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFII  431

Query  458  FIFFMFPETKRLSAEDAARVF  478
            F+FF  PETK  + E+   +F
Sbjct  432  FVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 71.3 bits (175),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 66/394 (17%), Positives = 129/394 (33%), Gaps = 53/394 (13%)

Query  36   LVIATNVNQASLLTGFQAMPSWQKYFKSPTGALLGIYAASYFLPSIFTAFIGDVISTKMG  95
            L +A  +          A+P         +   +G+    + L       +   +S + G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  96   RRWCIIVANIIITIGCLVNTFASSVGMWCGGRAIIGAGVGIVKVAAPVLIQEISHPRLRP  155
            RR  +++  ++  +G L+  FASS+ +    R + G G G +  AA  LI +   P  R 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  156  ILGSCYQTFAYIGIFFAAIMTFAGLYVPGDWGWRFPSLLQ-VIGPVAVIIVTMLCPESPR  214
                       +G     +    G  +   +GWR   L+  ++  +A +++ +  P    
Sbjct  121  RALGLVSAGFGLGAALGPL---LGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  215  WLIKNGREEEAVGVLARLHANGDKEDALVQLEIKEIRTAIEREVAQRKASFVDFLRTRGN  274
               K   E     ++A                                            
Sbjct  178  KRPKPAEEARLSLIVAWKAL----------------------------------------  197

Query  275  RRRLAVVVALACSLNWMGNGIITYFLSPILKSVGITSAVQITLINSGLALWNLILAASAA  334
             R   + + LA  L       +  +L    + +G+ SA+   L+     L   I      
Sbjct  198  LRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGL-SALLAGLLLGLGGLLGAIGRLLLG  256

Query  335  VYCDKAGRRPLFLTSVAGMLCSYVVVMGLSAGFANTKQSSLGIAVIPLLFIYFGFYDMAF  394
               D+ GRR   L ++  ++ + + ++ LS         +L    + L  +  GF     
Sbjct  257  RLSDRLGRRRRLLLALLLLILAALGLLLLS--------LTLSSLWLLLALLLLGFGFGLV  308

Query  395  TPLPIAYTVEILPFTIRSKGMALFTSTATMGNAF  428
             P   A   ++ P   R     L+ +  ++G A 
Sbjct  309  FPALNALVSDLAPKEERGTASGLYNTAGSLGGAL  342



Lambda      K        H        a         alpha
   0.326    0.140    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00020713

Length=166
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         62.3    2e-12


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 62.3 bits (152),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 37/121 (31%), Positives = 63/121 (52%), Gaps = 1/121 (1%)

Query  7    VVMGLSAGFANTKQSSLGIAVIPLLFIYFGFYDMAFTPLPIAYTVEILPFTIRSKGMALF  66
            V++G+ A    +K    GI  I  + ++  F+ M + P+P     E+ P ++RSK MAL 
Sbjct  332  VILGIVALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALA  391

Query  67   TSTATMGNAFNQFVNPIALKAISWRY-YAVYIAILLFYFCFIFFMFPETKRLSAEDAARV  125
            T+   + N    F+ PI   AI   Y + ++  +L+ +  F+FF  PETK  + E+   +
Sbjct  392  TAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDEL  451

Query  126  F  126
            F
Sbjct  452  F  452



Lambda      K        H        a         alpha
   0.327    0.140    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00020714

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         159     8e-46


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 159 bits (404),  Expect = 8e-46, Method: Composition-based stats.
 Identities = 86/274 (31%), Positives = 143/274 (52%), Gaps = 12/274 (4%)

Query  1    MLCPESPRWLIKNGREEEAVGVLARLHANGDKEDALVQLEIKEIRTAIEREVAQRKASFV  60
            +  PESPRWL++ GR EEA  VLA+L     +    V  E+ EI+ ++E      KAS+ 
Sbjct  189  LFLPESPRWLVEKGRLEEAREVLAKL-----RGVPDVDRELDEIKDSLEAGQEAEKASWK  243

Query  61   DFLRTRGNRRRLAVVVALACSLNWMGNGIITYFLSPILKSVGITSAVQITLINSGLALWN  120
            +   T+  R+RL + V L       G   I Y+ + I +++G++ +  +T+I   + + N
Sbjct  244  ELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTII---VGVVN  300

Query  121  LILAASAAVYC-DKAGRRPLFLTSVAGMLCSYVVVMGLSAGFANTKQSSLGIAVIPLLFI  179
              +    A++  D+ GRRPL L   AGM   +V+ +G+ A    +K    GI  I  + +
Sbjct  301  -FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVI-LGIVALLGVSKSDWAGIVAIVFIAL  358

Query  180  YFGFYDMAFTPLPIAYTVEILPFTIRSKGMALFTSTATMGNAFNQFVNPIALKAISWRY-  238
            +  F+ M + P+P     E+ P ++RSK MAL T+   + N    F+ PI   AI   Y 
Sbjct  359  FIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYT  418

Query  239  YAVYIAILLFYFCFIFFMFPETKRLSAEDAARVF  272
            + ++  +L+ +  F+FF  PETK  + E+   +F
Sbjct  419  FFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.325    0.138    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00026215

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         141     3e-39


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 141 bits (357),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 81/266 (30%), Positives = 137/266 (52%), Gaps = 12/266 (5%)

Query  5    WLIKNGREEEAVGVLARLHANGDKEDALVQLEIKEIRTAIEREVAQRKASFVDFLRTRGN  64
            WL++ GR EEA  VLA+L     +    V  E+ EI+ ++E      KAS+ +   T+  
Sbjct  197  WLVEKGRLEEAREVLAKL-----RGVPDVDRELDEIKDSLEAGQEAEKASWKELFSTKTR  251

Query  65   RRRLAVVVALACSLNWMGNGIITYFLSPILKSVGITSAVQITLINSGLALWNLILAASAA  124
            R+RL + V L       G   I Y+ + I +++G++ +  +T+I   + + N  +    A
Sbjct  252  RQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTII---VGVVN-FVFTFIA  307

Query  125  VYC-DKAGRRPLFLTSVAGMLCSYVVVMGLSAGFANTKQSSLGIAVIPLLFIYFGFYDMA  183
            ++  D+ GRRPL L   AGM   +V+ +G+ A    +K    GI  I  + ++  F+ M 
Sbjct  308  IFLVDRFGRRPLLLLGAAGMAICFVI-LGIVALLGVSKSDWAGIVAIVFIALFIAFFAMG  366

Query  184  FTPLPIAYTVEILPFTIRSKGMALFTSTATMGNAFNQFVNPIALKAISWRY-YAVYIAIL  242
            + P+P     E+ P ++RSK MAL T+   + N    F+ PI   AI   Y + ++  +L
Sbjct  367  WGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLL  426

Query  243  LFYFCFIFFMFPETKRLSAEDAARVF  268
            + +  F+FF  PETK  + E+   +F
Sbjct  427  VLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.326    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00020715

Length=166
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         62.3    2e-12


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 62.3 bits (152),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 37/121 (31%), Positives = 63/121 (52%), Gaps = 1/121 (1%)

Query  7    VVMGLSAGFANTKQSSLGIAVIPLLFIYFGFYDMAFTPLPIAYTVEILPFTIRSKGMALF  66
            V++G+ A    +K    GI  I  + ++  F+ M + P+P     E+ P ++RSK MAL 
Sbjct  332  VILGIVALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALA  391

Query  67   TSTATMGNAFNQFVNPIALKAISWRY-YAVYIAILLFYFCFIFFMFPETKRLSAEDAARV  125
            T+   + N    F+ PI   AI   Y + ++  +L+ +  F+FF  PETK  + E+   +
Sbjct  392  TAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDEL  451

Query  126  F  126
            F
Sbjct  452  F  452



Lambda      K        H        a         alpha
   0.327    0.140    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00020716

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         237     1e-73
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            69.4    2e-13


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 237 bits (606),  Expect = 1e-73, Method: Composition-based stats.
 Identities = 128/415 (31%), Positives = 207/415 (50%), Gaps = 13/415 (3%)

Query  15   LLGIYAASYFLPSIFTAFIGDVISTKMGRRWCIIVANIIITIGCLVNTFA---SSVGMWC  71
            L G+  + + +     +     +  + GR+  +++AN++  IG ++   A    SV    
Sbjct  47   LSGLIVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLI  106

Query  72   GGRAIIGAGVGIVKVAAPVLIQEISHPRLRPILGSCYQTFAYIGIFFAAIMTFAGLYVPG  131
             GR ++G GVG   V AP+ I EI+  +LR  LGS YQ     GI  A I          
Sbjct  107  VGRVLVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSN  166

Query  132  DWGWRFPSLLQVIGPVAVIIVTMLCPESPRWLIKNGREEEAVGVLARLHANGDKEDALVQ  191
              GWR P  LQ++  + +II  +  PESPRWL++ GR EEA  VLA+L     +    V 
Sbjct  167  SDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKL-----RGVPDVD  221

Query  192  LEIKEIRTAIEREVAQRKASFVDFLRTRGNRRRLAVVVALACSLNWMGNGIITYFLSPIL  251
             E+ EI+ ++E      KAS+ +   T+  R+RL + V L       G   I Y+ + I 
Sbjct  222  RELDEIKDSLEAGQEAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIF  281

Query  252  KSVGITSAVQITLINSGLALWNLILAASAAVYCDKAGRRPLFLTSVAGMLCSYVVVMGLS  311
            +++G++ +  +T+I   + + N +    A    D+ GRRPL L   AGM   + V++G+ 
Sbjct  282  ENLGLSDSFLVTII---VGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICF-VILGIV  337

Query  312  AGFANTKQSSLGIAVIPLLFIYFGFYDMAFTPLPIAYTVEILPFTIRSKGMALFTSTATM  371
            A    +K    GI  I  + ++  F+ M + P+P     E+ P ++RSK MAL T+   +
Sbjct  338  ALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWL  397

Query  372  GNAFNQFVNPIALKAISWRY-YAVYIAILLFYFCFIFFMFPETKRLSAEDAARVF  425
             N    F+ PI   AI   Y + ++  +L+ +  F+FF  PETK  + E+   +F
Sbjct  398  ANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 69.4 bits (170),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 62/365 (17%), Positives = 122/365 (33%), Gaps = 53/365 (15%)

Query  12   TGALLGIYAASYFLPSIFTAFIGDVISTKMGRRWCIIVANIIITIGCLVNTFASSVGMWC  71
            +   +G+    + L       +   +S + GRR  +++  ++  +G L+  FASS+ +  
Sbjct  30   SPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLL  89

Query  72   GGRAIIGAGVGIVKVAAPVLIQEISHPRLRPILGSCYQTFAYIGIFFAAIMTFAGLYVPG  131
              R + G G G +  AA  LI +   P  R            +G     +    G  +  
Sbjct  90   VLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPL---LGGLLAS  146

Query  132  DWGWRFPSLLQ-VIGPVAVIIVTMLCPESPRWLIKNGREEEAVGVLARLHANGDKEDALV  190
             +GWR   L+  ++  +A +++ +  P       K   E     ++A             
Sbjct  147  LFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKAL---------  197

Query  191  QLEIKEIRTAIEREVAQRKASFVDFLRTRGNRRRLAVVVALACSLNWMGNGIITYFLSPI  250
                                            R   + + LA  L       +  +L   
Sbjct  198  -------------------------------LRDPVLWLLLALLLFGFAFFGLLTYLPLY  226

Query  251  LKSVGITSAVQITLINSGLALWNLILAASAAVYCDKAGRRPLFLTSVAGMLCSYVVVMGL  310
             + +G+ SA+   L+     L   I         D+ GRR   L ++  ++ + + ++ L
Sbjct  227  QEVLGL-SALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLL  285

Query  311  SAGFANTKQSSLGIAVIPLLFIYFGFYDMAFTPLPIAYTVEILPFTIRSKGMALFTSTAT  370
            S         +L    + L  +  GF      P   A   ++ P   R     L+ +  +
Sbjct  286  S--------LTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAGS  337

Query  371  MGNAF  375
            +G A 
Sbjct  338  LGGAL  342



Lambda      K        H        a         alpha
   0.327    0.140    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 575139000


Query= TCONS_00026217

Length=546


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688900030


Query= TCONS_00026218

Length=621


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0722    0.140     1.90     42.6     43.6 

Effective search space used: 790552412


Query= TCONS_00020717

Length=746


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 948759104


Query= TCONS_00026219

Length=692


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 883399210


Query= TCONS_00020718

Length=381


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00020721

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  164     8e-49
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  69.8    8e-16


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 164 bits (417),  Expect = 8e-49, Method: Composition-based stats.
 Identities = 71/174 (41%), Positives = 94/174 (54%), Gaps = 27/174 (16%)

Query  145  KLGSFPAVNEDQTIDEAVELAKESDIALLMVGLDQDWESESYDRPDLSLPLRMNDLIRRV  204
             + S    ++D  I EAV  AK++D+A++ VGLD + E E YDR DL+LP   + LI+ V
Sbjct  68   VILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPETEGEGYDRTDLALPGNQDALIKAV  127

Query  205  ATEAPDTKKVVILQAGSAVSMPW--LEHVDAVLWPWYGGNEAGNAIADVVYGTVNPSGRL  262
            A     T  VV+L +G  V M     E+VDA+L  WY G E GNAIADV++G VNPSG+L
Sbjct  128  AAAGKPT--VVVLHSGGPVEMEPWAEENVDAILAAWYPGQEGGNAIADVLFGDVNPSGKL  185

Query  263  PITLPKRELDIAANLNFKSARTKTYYEEGIWVGYRHFNARGIEPLYPFGHGLSY  316
            P+T PK   D+ A                            +  LYP G+GLSY
Sbjct  186  PVTFPKSLEDLPAE-----------------------GGPLLPDLYPEGYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 69.8 bits (172),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query  357  VHFYTSPPPPTMTSLTHPAVTLQAFAKTAVLRPGQSERVTVEMDKFAISHWDELTSTWQA  416
            V  Y   P     S+  P   L+ F K   L PG+S+ VT  +D+  +S WDE    W  
Sbjct  2    VQLYVRDPVS---SVGRPVKELKGFEKVE-LAPGESKTVTFTLDRRDLSFWDEDGQRWVV  57

Query  417  EPGQWHVKIGRDA  429
            EPG++ V +G  +
Sbjct  58   EPGEYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.317    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 550599736


Query= TCONS_00026220

Length=791
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  164     5e-47
CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  143     2e-38


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 164 bits (418),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 71/174 (41%), Positives = 94/174 (54%), Gaps = 27/174 (16%)

Query  529  KLGSFPAVNEDQTIDEAVELAKESDIALLMVGLDQDWESESYDRPDLSLPLRMNDLIRRV  588
             + S    ++D  I EAV  AK++D+A++ VGLD + E E YDR DL+LP   + LI+ V
Sbjct  68   VILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPETEGEGYDRTDLALPGNQDALIKAV  127

Query  589  ATEAPDTKKVVILQAGSAVSMPW--LEHVDAVLWPWYGGNEAGNAIADVVYGTVNPSGRL  646
            A     T  VV+L +G  V M     E+VDA+L  WY G E GNAIADV++G VNPSG+L
Sbjct  128  AAAGKPT--VVVLHSGGPVEMEPWAEENVDAILAAWYPGQEGGNAIADVLFGDVNPSGKL  185

Query  647  PITLPKRELDIAANLNFKSARTKTYYEEGIWVGYRHFNARGIEPLYPFGHGLSY  700
            P+T PK   D+ A                            +  LYP G+GLSY
Sbjct  186  PVTFPKSLEDLPAE-----------------------GGPLLPDLYPEGYGLSY  216


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 143 bits (363),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 88/298 (30%), Positives = 131/298 (44%), Gaps = 44/298 (15%)

Query  12   TASVEDLVQRMSLTEKVSLLSGEDWWRTTAVPRLNIPSIKLTDGPNGARGQSFFKMTPAV  71
              ++ED VQ   L         E          L IP +   D   G R Q F + T   
Sbjct  39   GGNLEDWVQLSDLIRYQRQAVEESR--------LGIPLLVAVDQEGG-RVQRFGEGT---  86

Query  72   VLPNATGLAATFSPTLPAEAGRLLAAETKARGAVGLLAPTINICRSPLGGRTFESFGEDP  131
            + P+A  LAAT  P L  + G  +A E +A G     AP +++ R P  G    SF EDP
Sbjct  87   MFPSAIALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVDVARDPRWGIGERSFSEDP  146

Query  132  TLSGIMAAKYVSALQDDGISAAIKHFVANDQEHERMGQDS-------IIAPRALREIYLR  184
             L   +A   +  LQ  G+ A +KHF      H     DS           + LR + L 
Sbjct  147  QLVSALAGAMIEGLQGAGVLATVKHFPG----HGHGATDSHKETPTTPRPEQRLRTVDLL  202

Query  185  PFHIAQAL--AKPWSYMTS---YNKLNGTHCSEHEWLLSGLLRTEWGFDGLVMSYW----  235
            PF   QA   A   + M +   Y+ L+GT  +  ++LL+ +LR +WGFDG+V+S      
Sbjct  203  PF---QAAIEAGVDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMK  259

Query  236  ----MGTYS--VAEAINAGLDLEMPGKPRWRQLSLVRQLMNAHKISPVTIDERVRTIL  287
                 G  +  V  A+ AG+D+ +  + R + L   ++++   K+    ID  VR +L
Sbjct  260  GIADHGGPAEAVRRALEAGVDIALVPEERTKYL---KKVVKNGKLPMARIDAAVRRVL  314



Lambda      K        H        a         alpha
   0.318    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1014240944


Query= TCONS_00026221

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  143     2e-39


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 143 bits (362),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 88/298 (30%), Positives = 131/298 (44%), Gaps = 44/298 (15%)

Query  12   TASVEDLVQRMSLTEKVSLLSGEDWWRTTAVPRLNIPSIKLTDGPNGARGQSFFKMTPAV  71
              ++ED VQ   L         E          L IP +   D   G R Q F + T   
Sbjct  39   GGNLEDWVQLSDLIRYQRQAVEESR--------LGIPLLVAVDQEGG-RVQRFGEGT---  86

Query  72   VLPNATGLAATFSPTLPAEAGRLLAAETKARGAVGLLAPTINICRSPLGGRTFESFGEDP  131
            + P+A  LAAT  P L  + G  +A E +A G     AP +++ R P  G    SF EDP
Sbjct  87   MFPSAIALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVDVARDPRWGIGERSFSEDP  146

Query  132  TLSGIMAAKYVSALQDDGISAAIKHFVANDQEHERMGQDS-------IIAPRALREIYLR  184
             L   +A   +  LQ  G+ A +KHF      H     DS           + LR + L 
Sbjct  147  QLVSALAGAMIEGLQGAGVLATVKHFPG----HGHGATDSHKETPTTPRPEQRLRTVDLL  202

Query  185  PFHIAQAL--AKPWSYMTS---YNKLNGTHCSEHEWLLSGLLRTEWGFDGLVMSYW----  235
            PF   QA   A   + M +   Y+ L+GT  +  ++LL+ +LR +WGFDG+V+S      
Sbjct  203  PF---QAAIEAGVDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMK  259

Query  236  ----MGTYS--VAEAINAGLDLEMPGKPRWRQLSLVRQLMNAHKISPVTIDERVRTIL  287
                 G  +  V  A+ AG+D+ +  + R + L   ++++   K+    ID  VR +L
Sbjct  260  GIADHGGPAEAVRRALEAGVDIALVPEERTKYL---KKVVKNGKLPMARIDAAVRRVL  314



Lambda      K        H        a         alpha
   0.319    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00020719

Length=767
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  164     4e-47
CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  138     1e-36
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  70.6    8e-16


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 164 bits (418),  Expect = 4e-47, Method: Composition-based stats.
 Identities = 71/174 (41%), Positives = 94/174 (54%), Gaps = 27/174 (16%)

Query  463  KLGSFPAVNEDQTIDEAVELAKESDIALLMVGLDQDWESESYDRPDLSLPLRMNDLIRRV  522
             + S    ++D  I EAV  AK++D+A++ VGLD + E E YDR DL+LP   + LI+ V
Sbjct  68   VILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPETEGEGYDRTDLALPGNQDALIKAV  127

Query  523  ATEAPDTKKVVILQAGSAVSMPW--LEHVDAVLWPWYGGNEAGNAIADVVYGTVNPSGRL  580
            A     T  VV+L +G  V M     E+VDA+L  WY G E GNAIADV++G VNPSG+L
Sbjct  128  AAAGKPT--VVVLHSGGPVEMEPWAEENVDAILAAWYPGQEGGNAIADVLFGDVNPSGKL  185

Query  581  PITLPKRELDIAANLNFKSARTKTYYEEGIWVGYRHFNARGIEPLYPFGHGLSY  634
            P+T PK   D+ A                            +  LYP G+GLSY
Sbjct  186  PVTFPKSLEDLPAE-----------------------GGPLLPDLYPEGYGLSY  216


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 138 bits (349),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 73/238 (31%), Positives = 112/238 (47%), Gaps = 32/238 (13%)

Query  6    VLPNATGLAATFSPTLPAEAGRLLAAETKARGAVGLLAPTINICRSPLGGRTFESFGEDP  65
            + P+A  LAAT  P L  + G  +A E +A G     AP +++ R P  G    SF EDP
Sbjct  87   MFPSAIALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVDVARDPRWGIGERSFSEDP  146

Query  66   TLSGIMAAKYVSALQDDGISAAIKHFVANDQEHERMGQDS-------IIAPRALREIYLR  118
             L   +A   +  LQ  G+ A +KHF      H     DS           + LR + L 
Sbjct  147  QLVSALAGAMIEGLQGAGVLATVKHFPG----HGHGATDSHKETPTTPRPEQRLRTVDLL  202

Query  119  PFHIAQAL--AKPWSYMTS---YNKLNGTHCSEHEWLLSGLLRTEWGFDGLVMSYW----  169
            PF   QA   A   + M +   Y+ L+GT  +  ++LL+ +LR +WGFDG+V+S      
Sbjct  203  PF---QAAIEAGVDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMK  259

Query  170  ----MGTYS--VAEAINAGLDLEMPGKPRWRQLSLVRQLMNAHKISPVTIDERVRTIL  221
                 G  +  V  A+ AG+D+ +  + R + L   ++++   K+    ID  VR +L
Sbjct  260  GIADHGGPAEAVRRALEAGVDIALVPEERTKYL---KKVVKNGKLPMARIDAAVRRVL  314


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 70.6 bits (174),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query  675  VHFYTSPPPPTMTSLTHPAVTLQAFAKTAVLRPGQSERVTVEMDKFAISHWDELTSTWQA  734
            V  Y   P     S+  P   L+ F K   L PG+S+ VT  +D+  +S WDE    W  
Sbjct  2    VQLYVRDPVS---SVGRPVKELKGFEKVE-LAPGESKTVTFTLDRRDLSFWDEDGQRWVV  57

Query  735  EPGQWHVKIGRDA  747
            EPG++ V +G  +
Sbjct  58   EPGEYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.318    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 979317296


Query= TCONS_00026222

Length=767
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  164     5e-47
CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  138     1e-36
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  70.6    8e-16


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 164 bits (418),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 71/174 (41%), Positives = 94/174 (54%), Gaps = 27/174 (16%)

Query  463  KLGSFPAVNEDQTIDEAVELAKESDIALLMVGLDQDWESESYDRPDLSLPLRMNDLIRRV  522
             + S    ++D  I EAV  AK++D+A++ VGLD + E E YDR DL+LP   + LI+ V
Sbjct  68   VILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPETEGEGYDRTDLALPGNQDALIKAV  127

Query  523  ATEAPDTKKVVILQAGSAVSMPW--LEHVDAVLWPWYGGNEAGNAIADVVYGTVNPSGRL  580
            A     T  VV+L +G  V M     E+VDA+L  WY G E GNAIADV++G VNPSG+L
Sbjct  128  AAAGKPT--VVVLHSGGPVEMEPWAEENVDAILAAWYPGQEGGNAIADVLFGDVNPSGKL  185

Query  581  PITLPKRELDIAANLNFKSARTKTYYEEGIWVGYRHFNARGIEPLYPFGHGLSY  634
            P+T PK   D+ A                            +  LYP G+GLSY
Sbjct  186  PVTFPKSLEDLPAE-----------------------GGPLLPDLYPEGYGLSY  216


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 138 bits (349),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 73/238 (31%), Positives = 112/238 (47%), Gaps = 32/238 (13%)

Query  6    VLPNATGLAATFSPTLPAEAGRLLAAETKARGAVGLLAPTINICRSPLGGRTFESFGEDP  65
            + P+A  LAAT  P L  + G  +A E +A G     AP +++ R P  G    SF EDP
Sbjct  87   MFPSAIALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVDVARDPRWGIGERSFSEDP  146

Query  66   TLSGIMAAKYVSALQDDGISAAIKHFVANDQEHERMGQDS-------IIAPRALREIYLR  118
             L   +A   +  LQ  G+ A +KHF      H     DS           + LR + L 
Sbjct  147  QLVSALAGAMIEGLQGAGVLATVKHFPG----HGHGATDSHKETPTTPRPEQRLRTVDLL  202

Query  119  PFHIAQAL--AKPWSYMTS---YNKLNGTHCSEHEWLLSGLLRTEWGFDGLVMSYW----  169
            PF   QA   A   + M +   Y+ L+GT  +  ++LL+ +LR +WGFDG+V+S      
Sbjct  203  PF---QAAIEAGVDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMK  259

Query  170  ----MGTYS--VAEAINAGLDLEMPGKPRWRQLSLVRQLMNAHKISPVTIDERVRTIL  221
                 G  +  V  A+ AG+D+ +  + R + L   ++++   K+    ID  VR +L
Sbjct  260  GIADHGGPAEAVRRALEAGVDIALVPEERTKYL---KKVVKNGKLPMARIDAAVRRVL  314


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 70.6 bits (174),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query  675  VHFYTSPPPPTMTSLTHPAVTLQAFAKTAVLRPGQSERVTVEMDKFAISHWDELTSTWQA  734
            V  Y   P     S+  P   L+ F K   L PG+S+ VT  +D+  +S WDE    W  
Sbjct  2    VQLYVRDPVS---SVGRPVKELKGFEKVE-LAPGESKTVTFTLDRRDLSFWDEDGQRWVV  57

Query  735  EPGQWHVKIGRDA  747
            EPG++ V +G  +
Sbjct  58   EPGEYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.318    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 979317296


Query= TCONS_00020720

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  164     8e-49
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  69.8    8e-16


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 164 bits (417),  Expect = 8e-49, Method: Composition-based stats.
 Identities = 71/174 (41%), Positives = 94/174 (54%), Gaps = 27/174 (16%)

Query  145  KLGSFPAVNEDQTIDEAVELAKESDIALLMVGLDQDWESESYDRPDLSLPLRMNDLIRRV  204
             + S    ++D  I EAV  AK++D+A++ VGLD + E E YDR DL+LP   + LI+ V
Sbjct  68   VILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPETEGEGYDRTDLALPGNQDALIKAV  127

Query  205  ATEAPDTKKVVILQAGSAVSMPW--LEHVDAVLWPWYGGNEAGNAIADVVYGTVNPSGRL  262
            A     T  VV+L +G  V M     E+VDA+L  WY G E GNAIADV++G VNPSG+L
Sbjct  128  AAAGKPT--VVVLHSGGPVEMEPWAEENVDAILAAWYPGQEGGNAIADVLFGDVNPSGKL  185

Query  263  PITLPKRELDIAANLNFKSARTKTYYEEGIWVGYRHFNARGIEPLYPFGHGLSY  316
            P+T PK   D+ A                            +  LYP G+GLSY
Sbjct  186  PVTFPKSLEDLPAE-----------------------GGPLLPDLYPEGYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 69.8 bits (172),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query  357  VHFYTSPPPPTMTSLTHPAVTLQAFAKTAVLRPGQSERVTVEMDKFAISHWDELTSTWQA  416
            V  Y   P     S+  P   L+ F K   L PG+S+ VT  +D+  +S WDE    W  
Sbjct  2    VQLYVRDPVS---SVGRPVKELKGFEKVE-LAPGESKTVTFTLDRRDLSFWDEDGQRWVV  57

Query  417  EPGQWHVKIGRDA  429
            EPG++ V +G  +
Sbjct  58   EPGEYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.317    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 550599736


Query= TCONS_00026223

Length=767
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  164     5e-47
CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  138     1e-36
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  70.6    8e-16


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 164 bits (418),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 71/174 (41%), Positives = 94/174 (54%), Gaps = 27/174 (16%)

Query  463  KLGSFPAVNEDQTIDEAVELAKESDIALLMVGLDQDWESESYDRPDLSLPLRMNDLIRRV  522
             + S    ++D  I EAV  AK++D+A++ VGLD + E E YDR DL+LP   + LI+ V
Sbjct  68   VILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPETEGEGYDRTDLALPGNQDALIKAV  127

Query  523  ATEAPDTKKVVILQAGSAVSMPW--LEHVDAVLWPWYGGNEAGNAIADVVYGTVNPSGRL  580
            A     T  VV+L +G  V M     E+VDA+L  WY G E GNAIADV++G VNPSG+L
Sbjct  128  AAAGKPT--VVVLHSGGPVEMEPWAEENVDAILAAWYPGQEGGNAIADVLFGDVNPSGKL  185

Query  581  PITLPKRELDIAANLNFKSARTKTYYEEGIWVGYRHFNARGIEPLYPFGHGLSY  634
            P+T PK   D+ A                            +  LYP G+GLSY
Sbjct  186  PVTFPKSLEDLPAE-----------------------GGPLLPDLYPEGYGLSY  216


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 138 bits (349),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 73/238 (31%), Positives = 112/238 (47%), Gaps = 32/238 (13%)

Query  6    VLPNATGLAATFSPTLPAEAGRLLAAETKARGAVGLLAPTINICRSPLGGRTFESFGEDP  65
            + P+A  LAAT  P L  + G  +A E +A G     AP +++ R P  G    SF EDP
Sbjct  87   MFPSAIALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVDVARDPRWGIGERSFSEDP  146

Query  66   TLSGIMAAKYVSALQDDGISAAIKHFVANDQEHERMGQDS-------IIAPRALREIYLR  118
             L   +A   +  LQ  G+ A +KHF      H     DS           + LR + L 
Sbjct  147  QLVSALAGAMIEGLQGAGVLATVKHFPG----HGHGATDSHKETPTTPRPEQRLRTVDLL  202

Query  119  PFHIAQAL--AKPWSYMTS---YNKLNGTHCSEHEWLLSGLLRTEWGFDGLVMSYW----  169
            PF   QA   A   + M +   Y+ L+GT  +  ++LL+ +LR +WGFDG+V+S      
Sbjct  203  PF---QAAIEAGVDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMK  259

Query  170  ----MGTYS--VAEAINAGLDLEMPGKPRWRQLSLVRQLMNAHKISPVTIDERVRTIL  221
                 G  +  V  A+ AG+D+ +  + R + L   ++++   K+    ID  VR +L
Sbjct  260  GIADHGGPAEAVRRALEAGVDIALVPEERTKYL---KKVVKNGKLPMARIDAAVRRVL  314


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 70.6 bits (174),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query  675  VHFYTSPPPPTMTSLTHPAVTLQAFAKTAVLRPGQSERVTVEMDKFAISHWDELTSTWQA  734
            V  Y   P     S+  P   L+ F K   L PG+S+ VT  +D+  +S WDE    W  
Sbjct  2    VQLYVRDPVS---SVGRPVKELKGFEKVE-LAPGESKTVTFTLDRRDLSFWDEDGQRWVV  57

Query  735  EPGQWHVKIGRDA  747
            EPG++ V +G  +
Sbjct  58   EPGEYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.318    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 979317296


Query= TCONS_00020722

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  164     8e-49
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  69.8    8e-16


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 164 bits (417),  Expect = 8e-49, Method: Composition-based stats.
 Identities = 71/174 (41%), Positives = 94/174 (54%), Gaps = 27/174 (16%)

Query  145  KLGSFPAVNEDQTIDEAVELAKESDIALLMVGLDQDWESESYDRPDLSLPLRMNDLIRRV  204
             + S    ++D  I EAV  AK++D+A++ VGLD + E E YDR DL+LP   + LI+ V
Sbjct  68   VILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPETEGEGYDRTDLALPGNQDALIKAV  127

Query  205  ATEAPDTKKVVILQAGSAVSMPW--LEHVDAVLWPWYGGNEAGNAIADVVYGTVNPSGRL  262
            A     T  VV+L +G  V M     E+VDA+L  WY G E GNAIADV++G VNPSG+L
Sbjct  128  AAAGKPT--VVVLHSGGPVEMEPWAEENVDAILAAWYPGQEGGNAIADVLFGDVNPSGKL  185

Query  263  PITLPKRELDIAANLNFKSARTKTYYEEGIWVGYRHFNARGIEPLYPFGHGLSY  316
            P+T PK   D+ A                            +  LYP G+GLSY
Sbjct  186  PVTFPKSLEDLPAE-----------------------GGPLLPDLYPEGYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 69.8 bits (172),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query  357  VHFYTSPPPPTMTSLTHPAVTLQAFAKTAVLRPGQSERVTVEMDKFAISHWDELTSTWQA  416
            V  Y   P     S+  P   L+ F K   L PG+S+ VT  +D+  +S WDE    W  
Sbjct  2    VQLYVRDPVS---SVGRPVKELKGFEKVE-LAPGESKTVTFTLDRRDLSFWDEDGQRWVV  57

Query  417  EPGQWHVKIGRDA  429
            EPG++ V +G  +
Sbjct  58   EPGEYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.317    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 550599736


Query= TCONS_00020724

Length=833
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  165     4e-47
CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  143     3e-38
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  70.6    9e-16


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 165 bits (419),  Expect = 4e-47, Method: Composition-based stats.
 Identities = 71/174 (41%), Positives = 94/174 (54%), Gaps = 27/174 (16%)

Query  529  KLGSFPAVNEDQTIDEAVELAKESDIALLMVGLDQDWESESYDRPDLSLPLRMNDLIRRV  588
             + S    ++D  I EAV  AK++D+A++ VGLD + E E YDR DL+LP   + LI+ V
Sbjct  68   VILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPETEGEGYDRTDLALPGNQDALIKAV  127

Query  589  ATEAPDTKKVVILQAGSAVSMPW--LEHVDAVLWPWYGGNEAGNAIADVVYGTVNPSGRL  646
            A     T  VV+L +G  V M     E+VDA+L  WY G E GNAIADV++G VNPSG+L
Sbjct  128  AAAGKPT--VVVLHSGGPVEMEPWAEENVDAILAAWYPGQEGGNAIADVLFGDVNPSGKL  185

Query  647  PITLPKRELDIAANLNFKSARTKTYYEEGIWVGYRHFNARGIEPLYPFGHGLSY  700
            P+T PK   D+ A                            +  LYP G+GLSY
Sbjct  186  PVTFPKSLEDLPAE-----------------------GGPLLPDLYPEGYGLSY  216


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 143 bits (362),  Expect = 3e-38, Method: Composition-based stats.
 Identities = 88/298 (30%), Positives = 131/298 (44%), Gaps = 44/298 (15%)

Query  12   TASVEDLVQRMSLTEKVSLLSGEDWWRTTAVPRLNIPSIKLTDGPNGARGQSFFKMTPAV  71
              ++ED VQ   L         E          L IP +   D   G R Q F + T   
Sbjct  39   GGNLEDWVQLSDLIRYQRQAVEESR--------LGIPLLVAVDQEGG-RVQRFGEGT---  86

Query  72   VLPNATGLAATFSPTLPAEAGRLLAAETKARGAVGLLAPTINICRSPLGGRTFESFGEDP  131
            + P+A  LAAT  P L  + G  +A E +A G     AP +++ R P  G    SF EDP
Sbjct  87   MFPSAIALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVDVARDPRWGIGERSFSEDP  146

Query  132  TLSGIMAAKYVSALQDDGISAAIKHFVANDQEHERMGQDS-------IIAPRALREIYLR  184
             L   +A   +  LQ  G+ A +KHF      H     DS           + LR + L 
Sbjct  147  QLVSALAGAMIEGLQGAGVLATVKHFPG----HGHGATDSHKETPTTPRPEQRLRTVDLL  202

Query  185  PFHIAQAL--AKPWSYMTS---YNKLNGTHCSEHEWLLSGLLRTEWGFDGLVMSYW----  235
            PF   QA   A   + M +   Y+ L+GT  +  ++LL+ +LR +WGFDG+V+S      
Sbjct  203  PF---QAAIEAGVDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMK  259

Query  236  ----MGTYS--VAEAINAGLDLEMPGKPRWRQLSLVRQLMNAHKISPVTIDERVRTIL  287
                 G  +  V  A+ AG+D+ +  + R + L   ++++   K+    ID  VR +L
Sbjct  260  GIADHGGPAEAVRRALEAGVDIALVPEERTKYL---KKVVKNGKLPMARIDAAVRRVL  314


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 70.6 bits (174),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query  741  VHFYTSPPPPTMTSLTHPAVTLQAFAKTAVLRPGQSERVTVEMDKFAISHWDELTSTWQA  800
            V  Y   P     S+  P   L+ F K   L PG+S+ VT  +D+  +S WDE    W  
Sbjct  2    VQLYVRDPVS---SVGRPVKELKGFEKVE-LAPGESKTVTFTLDRRDLSFWDEDGQRWVV  57

Query  801  EPGQWHVKIGRDA  813
            EPG++ V +G  +
Sbjct  58   EPGEYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.318    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1059409332


Query= TCONS_00026224

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  164     8e-49
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  69.8    8e-16


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 164 bits (417),  Expect = 8e-49, Method: Composition-based stats.
 Identities = 71/174 (41%), Positives = 94/174 (54%), Gaps = 27/174 (16%)

Query  145  KLGSFPAVNEDQTIDEAVELAKESDIALLMVGLDQDWESESYDRPDLSLPLRMNDLIRRV  204
             + S    ++D  I EAV  AK++D+A++ VGLD + E E YDR DL+LP   + LI+ V
Sbjct  68   VILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPETEGEGYDRTDLALPGNQDALIKAV  127

Query  205  ATEAPDTKKVVILQAGSAVSMPW--LEHVDAVLWPWYGGNEAGNAIADVVYGTVNPSGRL  262
            A     T  VV+L +G  V M     E+VDA+L  WY G E GNAIADV++G VNPSG+L
Sbjct  128  AAAGKPT--VVVLHSGGPVEMEPWAEENVDAILAAWYPGQEGGNAIADVLFGDVNPSGKL  185

Query  263  PITLPKRELDIAANLNFKSARTKTYYEEGIWVGYRHFNARGIEPLYPFGHGLSY  316
            P+T PK   D+ A                            +  LYP G+GLSY
Sbjct  186  PVTFPKSLEDLPAE-----------------------GGPLLPDLYPEGYGLSY  216


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 69.8 bits (172),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query  357  VHFYTSPPPPTMTSLTHPAVTLQAFAKTAVLRPGQSERVTVEMDKFAISHWDELTSTWQA  416
            V  Y   P     S+  P   L+ F K   L PG+S+ VT  +D+  +S WDE    W  
Sbjct  2    VQLYVRDPVS---SVGRPVKELKGFEKVE-LAPGESKTVTFTLDRRDLSFWDEDGQRWVV  57

Query  417  EPGQWHVKIGRDA  429
            EPG++ V +G  +
Sbjct  58   EPGEYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.317    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 550599736


Query= TCONS_00026225

Length=697
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  165     1e-47
CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  89.0    8e-20
CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain....  70.6    9e-16


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 165 bits (420),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 71/174 (41%), Positives = 94/174 (54%), Gaps = 27/174 (16%)

Query  393  KLGSFPAVNEDQTIDEAVELAKESDIALLMVGLDQDWESESYDRPDLSLPLRMNDLIRRV  452
             + S    ++D  I EAV  AK++D+A++ VGLD + E E YDR DL+LP   + LI+ V
Sbjct  68   VILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPETEGEGYDRTDLALPGNQDALIKAV  127

Query  453  ATEAPDTKKVVILQAGSAVSMPW--LEHVDAVLWPWYGGNEAGNAIADVVYGTVNPSGRL  510
            A     T  VV+L +G  V M     E+VDA+L  WY G E GNAIADV++G VNPSG+L
Sbjct  128  AAAGKPT--VVVLHSGGPVEMEPWAEENVDAILAAWYPGQEGGNAIADVLFGDVNPSGKL  185

Query  511  PITLPKRELDIAANLNFKSARTKTYYEEGIWVGYRHFNARGIEPLYPFGHGLSY  564
            P+T PK   D+ A                            +  LYP G+GLSY
Sbjct  186  PVTFPKSLEDLPAE-----------------------GGPLLPDLYPEGYGLSY  216


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 89.0 bits (221),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 32/173 (18%)

Query  1    MAAKYVSALQDDGISAAIKHFVANDQEHERMGQDS-------IIAPRALREIYLRPFHIA  53
            +A   +  LQ  G+ A +KHF      H     DS           + LR + L PF   
Sbjct  152  LAGAMIEGLQGAGVLATVKHFPG----HGHGATDSHKETPTTPRPEQRLRTVDLLPF---  204

Query  54   QAL--AKPWSYMTS---YNKLNGTHCSEHEWLLSGLLRTEWGFDGLVMSYW--------M  100
            QA   A   + M +   Y+ L+GT  +  ++LL+ +LR +WGFDG+V+S           
Sbjct  205  QAAIEAGVDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMKGIADH  264

Query  101  GTYS--VAEAINAGLDLEMPGKPRWRQLSLVRQLMNAHKISPVTIDERVRTIL  151
            G  +  V  A+ AG+D+ +  + R + L   ++++   K+    ID  VR +L
Sbjct  265  GGPAEAVRRALEAGVDIALVPEERTKYL---KKVVKNGKLPMARIDAAVRRVL  314


>CDD:433860 pfam14310, Fn3-like, Fibronectin type III-like domain.  This 
domain has a fibronectin type III-like structure. It is often 
found in association with pfam00933 and pfam01915. Its function 
is unknown.
Length=70

 Score = 70.6 bits (174),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query  605  VHFYTSPPPPTMTSLTHPAVTLQAFAKTAVLRPGQSERVTVEMDKFAISHWDELTSTWQA  664
            V  Y   P     S+  P   L+ F K   L PG+S+ VT  +D+  +S WDE    W  
Sbjct  2    VQLYVRDPVS---SVGRPVKELKGFEKVE-LAPGESKTVTFTLDRRDLSFWDEDGQRWVV  57

Query  665  EPGQWHVKIGRDA  677
            EPG++ V +G  +
Sbjct  58   EPGEYEVLVGSSS  70



Lambda      K        H        a         alpha
   0.318    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 890773160


Query= TCONS_00020725

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  115     1e-29


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 115 bits (290),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 131/378 (35%), Gaps = 57/378 (15%)

Query  6    TVAIIGAGPSGLALALALHKQSIACTLYEARASALDIGGAMMLCPNGLRILDSLGVYSRI  65
             V I+G GP+GL LAL L +  +   L E  A+   +  A  L    + +L   G+  RI
Sbjct  3    DVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAHGLNQRTMELLRQAGLEDRI  62

Query  66   RPEGYEFDKLYFRSPDDQPMDTYEFGGVEQYGYRAMCIY-RHVLIRELSAMVREAGIPIE  124
              EG   + +     + +     +F          + +Y +  L   L       G  + 
Sbjct  63   LAEGVPHEGMGLAFYNTRRRADLDFLT----SPPRVTVYPQTELEPILVEHAEARGAQVR  118

Query  125  YHKKFVRVLAETEKDITWEFSDG-----STATATCVVGADGIHSRVRHYL---YPGLEPS  176
            +  + + +  + +  +T    D       T  A  +VG DG  S VR  L   + G E  
Sbjct  119  FGTEVLSLEQDGDG-VTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKTLGIEFEGFEGV  177

Query  177  -FTKMVIVAAAVPTSQLQVPSSYNLPVTILNQQHGAVFIAPQLGDGSEVMVGRQKRSEQL  235
             F  + ++  A   S     +  +    I         + P    G E    +    E+ 
Sbjct  178  PFGSLDVLFDAPDLSDPVERAFVH--YLIYAPHSRGFMVGPWRSAGRERYYVQVPWDEE-  234

Query  236  TREGWDELLNNNKEWCMDFLRQGSDDFPEIVQRAVSNITPEKIFLWPLFIVPKLGTWTS-  294
              E   E                 +   E +++ + +I    + L  +      G  +  
Sbjct  235  -VEERPE-----------------EFTDEELKQRLRSIVGIDLALVEILWKSIWGVASRV  276

Query  295  ----RHGRVVIVGDAAHAIPPAAGQGVNQAFEDVFTYSLMLGRSDKDALARSLKVWQTRR  350
                R GRV + GDAAH  PP  GQG+N A +D F     L       LA  L+      
Sbjct  277  ATRYRKGRVFLAGDAAHIHPPTGGQGLNTAIQDAFN----LAW----KLAAVLRGQ--AG  326

Query  351  QERIDKVLALNTYMERRR  368
            +  +D      TY   R 
Sbjct  327  ESLLD------TYSAERL  338



Lambda      K        H        a         alpha
   0.321    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00026226

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  115     1e-29


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 115 bits (290),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 131/378 (35%), Gaps = 57/378 (15%)

Query  6    TVAIIGAGPSGLALALALHKQSIACTLYEARASALDIGGAMMLCPNGLRILDSLGVYSRI  65
             V I+G GP+GL LAL L +  +   L E  A+   +  A  L    + +L   G+  RI
Sbjct  3    DVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAHGLNQRTMELLRQAGLEDRI  62

Query  66   RPEGYEFDKLYFRSPDDQPMDTYEFGGVEQYGYRAMCIY-RHVLIRELSAMVREAGIPIE  124
              EG   + +     + +     +F          + +Y +  L   L       G  + 
Sbjct  63   LAEGVPHEGMGLAFYNTRRRADLDFLT----SPPRVTVYPQTELEPILVEHAEARGAQVR  118

Query  125  YHKKFVRVLAETEKDITWEFSDG-----STATATCVVGADGIHSRVRHYL---YPGLEPS  176
            +  + + +  + +  +T    D       T  A  +VG DG  S VR  L   + G E  
Sbjct  119  FGTEVLSLEQDGDG-VTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKTLGIEFEGFEGV  177

Query  177  -FTKMVIVAAAVPTSQLQVPSSYNLPVTILNQQHGAVFIAPQLGDGSEVMVGRQKRSEQL  235
             F  + ++  A   S     +  +    I         + P    G E    +    E+ 
Sbjct  178  PFGSLDVLFDAPDLSDPVERAFVH--YLIYAPHSRGFMVGPWRSAGRERYYVQVPWDEE-  234

Query  236  TREGWDELLNNNKEWCMDFLRQGSDDFPEIVQRAVSNITPEKIFLWPLFIVPKLGTWTS-  294
              E   E                 +   E +++ + +I    + L  +      G  +  
Sbjct  235  -VEERPE-----------------EFTDEELKQRLRSIVGIDLALVEILWKSIWGVASRV  276

Query  295  ----RHGRVVIVGDAAHAIPPAAGQGVNQAFEDVFTYSLMLGRSDKDALARSLKVWQTRR  350
                R GRV + GDAAH  PP  GQG+N A +D F     L       LA  L+      
Sbjct  277  ATRYRKGRVFLAGDAAHIHPPTGGQGLNTAIQDAFN----LAW----KLAAVLRGQ--AG  326

Query  351  QERIDKVLALNTYMERRR  368
            +  +D      TY   R 
Sbjct  327  ESLLD------TYSAERL  338



Lambda      K        H        a         alpha
   0.321    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00020726

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.125    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0836    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00020727

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00020728

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425851 pfam00753, Lactamase_B, Metallo-beta-lactamase superfa...  67.8    5e-15


>CDD:425851 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily.  

Length=196

 Score = 67.8 bits (165),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 25/157 (16%), Positives = 44/157 (28%), Gaps = 10/157 (6%)

Query  19   TTLIVGASESILIDPPFLIPDALSVVRWI--KETTENPLKAVFVTHHHPDHFFSANPILD  76
            + LI G   ++LID         +++  +         + AV +TH H DH      + +
Sbjct  8    SYLIEGGGGAVLIDT--GGSAEAALLLLLAALGLGPKDIDAVILTHGHFDHIGGLGELAE  65

Query  77   AFPSAKFYAASYVLEGINREYDDKVKYWPTIFGRQNVPEAPRKPEVFNFGFFLLNGNPES  136
            A        A    E ++ E                                        
Sbjct  66   ATDVPVIVVAEEARELLDEELGLAASRL------GLPGPPVVPLPPDVVLEEGDGILGGG  119

Query  137  PVVLLGPLQGDSVGHTVFWLPMEKTVICGDTVYGRST  173
              +L+    G   GH V +    K +  GD ++    
Sbjct  120  LGLLVTHGPGHGPGHVVVYYGGGKVLFTGDLLFAGEI  156



Lambda      K        H        a         alpha
   0.321    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00020729

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425851 pfam00753, Lactamase_B, Metallo-beta-lactamase superfa...  67.8    5e-15


>CDD:425851 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily.  

Length=196

 Score = 67.8 bits (165),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 25/157 (16%), Positives = 44/157 (28%), Gaps = 10/157 (6%)

Query  19   TTLIVGASESILIDPPFLIPDALSVVRWI--KETTENPLKAVFVTHHHPDHFFSANPILD  76
            + LI G   ++LID         +++  +         + AV +TH H DH      + +
Sbjct  8    SYLIEGGGGAVLIDT--GGSAEAALLLLLAALGLGPKDIDAVILTHGHFDHIGGLGELAE  65

Query  77   AFPSAKFYAASYVLEGINREYDDKVKYWPTIFGRQNVPEAPRKPEVFNFGFFLLNGNPES  136
            A        A    E ++ E                                        
Sbjct  66   ATDVPVIVVAEEARELLDEELGLAASRL------GLPGPPVVPLPPDVVLEEGDGILGGG  119

Query  137  PVVLLGPLQGDSVGHTVFWLPMEKTVICGDTVYGRST  173
              +L+    G   GH V +    K +  GD ++    
Sbjct  120  LGLLVTHGPGHGPGHVVVYYGGGKVLFTGDLLFAGEI  156



Lambda      K        H        a         alpha
   0.321    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00026227

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00020730

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  130     9e-38
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  113     1e-30


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 130 bits (330),  Expect = 9e-38, Method: Composition-based stats.
 Identities = 73/210 (35%), Positives = 100/210 (48%), Gaps = 23/210 (11%)

Query  16   KVIVVTGGANGIGASLVEYCGQQGAYVCFGDVAENAGYQIAQSLCSSGSSSSPRAVFQHT  75
            KV +VTG ++GIG ++ +   ++GA V   D +E     +A+ L + G     +A+F   
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALG----GKALFIQG  56

Query  76   DVTSYQSVLGLFDLALKTYGRIDHVVACAGIMEIGNLFDPALTLETVRETPTTKVLDVNL  135
            DVT    V  L + A++  GR+D +V  AGI   G      L+ E        +V+DVNL
Sbjct  57   DVTDRAQVKALVEQAVERLGRLDILVNNAGI--TGLGPFSELSDEDWE-----RVIDVNL  109

Query  136  TGCLYVARIASVYLRQNRPENADR---SITLISSVAGFKESPGMFVYQASKHGVLGLMRS  192
            TG   + R          P         I  ISSVAG    PG   Y ASK  V+G  RS
Sbjct  110  TGVFNLTRAVL-------PAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRS  162

Query  193  LRLYLSSPTHHIRVNAICPWMTTTAMVKGV  222
            L L L+   H IRVNA+ P    T M K +
Sbjct  163  LALELA--PHGIRVNAVAPGGVDTDMTKEL  190


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 113 bits (286),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 106/250 (42%), Gaps = 33/250 (13%)

Query  25   NGIGASLVEYCGQQGAYVCFGDVAENAGYQIAQSLCSSGSSSSPRAVFQHTDVTSYQSVL  84
            +GIG ++     ++GA V   D+ E    ++ +            AV    DVT  + V 
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEEL-----GAAVL-PCDVTDEEQVE  59

Query  85   GLFDLALKTYGRIDHVVACAGIM--EIGNLFDPALTLETVRETPTTKVLDVNLTGCLYVA  142
             L   A++ +GR+D +V  AG      G   D   + E        + LDVNL     +A
Sbjct  60   ALVAAAVEKFGRLDILVNNAGFAPKLKGPFLD--TSREDFD-----RALDVNLYSLFLLA  112

Query  143  RIASVYLRQNRPENADRSITLISSVAGFKESPGMFVYQASKHGVLGLMRSLRLYLSSPTH  202
            + A   +++        SI  +SS+   +  P    Y A+K  +  L R L + L     
Sbjct  113  KAALPLMKEG------GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGP--R  164

Query  203  HIRVNAICPWMTTTAMVKGV-----QEAWMKAKLPCN---TPADVAYIIAGVLAD--SAL  252
             IRVNAI P    T    G+       A  +A+ P     TP +VA   A + +D  S +
Sbjct  165  GIRVNAISPGPIKTLAASGIPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDLASYI  224

Query  253  NGKSMYVEGG  262
             G+ +YV+GG
Sbjct  225  TGQVLYVDGG  234



Lambda      K        H        a         alpha
   0.319    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00026228

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00020733

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395259 pfam00328, His_Phos_2, Histidine phosphatase superfami...  194     6e-58


>CDD:395259 pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 
2).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches.The smaller 
branch 2 contains predominantly eukaryotic proteins. The 
catalytic functions in members include phytase, glucose-1-phosphatase 
and multiple inositol polyphosphate phosphatase. 
The in vivo roles of the mammalian acid phosphatases in branch 
2 are not fully understood, although activity against lysophosphatidic 
acid and tyrosine-phosphorylated proteins has 
been demonstrated.
Length=356

 Score = 194 bits (496),  Expect = 6e-58, Method: Composition-based stats.
 Identities = 112/418 (27%), Positives = 163/418 (39%), Gaps = 81/418 (19%)

Query  67   ELSQVHVLHRHAERYPTPYPLDGQGMEDFAAKWSNYTKSLHLKAPATGPLSFLNDWE---  123
            EL QV V+ RH +R PT      Q  +          K L L     G LSF  D+    
Sbjct  1    ELEQVQVVSRHGDRTPT------QKFKKSYESL--IFKILSLAGSLEGKLSFPGDYRYFK  52

Query  124  --YILGEDTLLATGAATEATAGASFWANYGRLLYRAGRENGAAWNASLNVYPNGTARPKP  181
              Y LG   L  +G       G  F   Y   L R                 +G      
Sbjct  53   LQYTLGWGGLTPSGRVQAENLGRYFRQRYVGGLLR-----------------DGYNAKDI  95

Query  182  VFRTTSQPRILESARWWLSGFFGDTGANSSSD-----QYDLVVIPE--ASNFNNTLASYD  234
              R +S+ R++ SA+ +  G FG  G +   D         V I E   +  NN  A Y 
Sbjct  96   YIRASSEGRVIASAQAFAEGLFGPEGEDVDKDLLDDSNVAKVTIDEDKKALANNLTAGYC  155

Query  235  SCP------GDMTEGDDSAQKFIPRYTRQAISRLSRHLPKDFNLTALDVLAMQNICVYEH  288
            SCP        + + D++   ++P +      RL +  P + NLTA DV A+  +C +E 
Sbjct  156  SCPAFEWPLQLLKQVDEALDYYLPVFLEPIAKRLEQLCPGETNLTADDVWALLFLCFFET  215

Query  289  ISLGGSSFCSLFTEQEWRDFAYNVDV-QYYGDYAYGSPTGRAQGIGYVLELAARLQGTLI  347
                 S FC LFTE++     Y +D+ +YYG    G+   +  G   + EL ARL   L+
Sbjct  216  NKADLSPFCDLFTEEDALHNEYLLDLEEYYGLAGIGNELKKTIGGPLLNELLARLTNDLV  275

Query  348  YSSDTSINFTYDNNLAQFPLDQPFYLDMSHDDILLSVITALGLRYFRYGPHGLPGNVDHA  407
                           A FPLD   YL  +HD  + S+++ALGL         LP      
Sbjct  276  -----------CTQEATFPLDAKLYLYFTHDTTIYSLLSALGL------FDDLPPLSSLR  318

Query  408  LNRTFAMSQMTPFGARLMSEVWTCPRNASLDSLAPVLYRNPHVEHTVGTTRFIRFVLN  465
            +   ++ S   P+GARL+ E++ C                         +R++R +LN
Sbjct  319  VLDGYSASGEVPYGARLVFELYECSSE--------------------KDSRYVRLLLN  356



Lambda      K        H        a         alpha
   0.318    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00020734

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00020735

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395259 pfam00328, His_Phos_2, Histidine phosphatase superfami...  187     4e-55


>CDD:395259 pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 
2).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches.The smaller 
branch 2 contains predominantly eukaryotic proteins. The 
catalytic functions in members include phytase, glucose-1-phosphatase 
and multiple inositol polyphosphate phosphatase. 
The in vivo roles of the mammalian acid phosphatases in branch 
2 are not fully understood, although activity against lysophosphatidic 
acid and tyrosine-phosphorylated proteins has 
been demonstrated.
Length=356

 Score = 187 bits (477),  Expect = 4e-55, Method: Composition-based stats.
 Identities = 112/426 (26%), Positives = 163/426 (38%), Gaps = 89/426 (21%)

Query  67   ELSQVHVLHRHAERYPTPYPLDGQGMEDFAAKWSNYTKSLHLKAPATGPLSFLNDWE---  123
            EL QV V+ RH +R PT      Q  +          K L L     G LSF  D+    
Sbjct  1    ELEQVQVVSRHGDRTPT------QKFKKSYESL--IFKILSLAGSLEGKLSFPGDYRYFK  52

Query  124  --YILGEDTLLATGAATEATAGASFWANYGRLLYRAGRENGAAWNASLNVYPNGTARPKP  181
              Y LG   L  +G       G  F   Y   L R                 +G      
Sbjct  53   LQYTLGWGGLTPSGRVQAENLGRYFRQRYVGGLLR-----------------DGYNAKDI  95

Query  182  VFRTTSQPRILESARWWLSMDSLMSRGGFFGDTGANSSSD-----QYDLVVIPE--ASNF  234
              R +S+ R++ SA+ +          G FG  G +   D         V I E   +  
Sbjct  96   YIRASSEGRVIASAQAFAE--------GLFGPEGEDVDKDLLDDSNVAKVTIDEDKKALA  147

Query  235  NNTLASYDSCP------GDMTEGDDSAQKFIPRYTRQAISRLSRHLPKDFNLTALDVLAM  288
            NN  A Y SCP        + + D++   ++P +      RL +  P + NLTA DV A+
Sbjct  148  NNLTAGYCSCPAFEWPLQLLKQVDEALDYYLPVFLEPIAKRLEQLCPGETNLTADDVWAL  207

Query  289  QNICVYEHISLGGSSFCSLFTEQEWRDFAYNVDV-QYYGDYAYGSPTGRAQGIGYVLELA  347
              +C +E      S FC LFTE++     Y +D+ +YYG    G+   +  G   + EL 
Sbjct  208  LFLCFFETNKADLSPFCDLFTEEDALHNEYLLDLEEYYGLAGIGNELKKTIGGPLLNELL  267

Query  348  ARLQGTLIYSSDTSINFTYDNNLAQFPLDQPFYLDMSHDDILLSVITALGLRYFRYGPHG  407
            ARL   L+               A FPLD   YL  +HD  + S+++ALGL         
Sbjct  268  ARLTNDLV-----------CTQEATFPLDAKLYLYFTHDTTIYSLLSALGL------FDD  310

Query  408  LPGNVDHALNRTFAMSQMTPFGARLMSEVWTCPRNASLDSLAPVLYRNPHVEHTVGTTRF  467
            LP      +   ++ S   P+GARL+ E++ C                         +R+
Sbjct  311  LPPLSSLRVLDGYSASGEVPYGARLVFELYECSSE--------------------KDSRY  350

Query  468  IRFVLN  473
            +R +LN
Sbjct  351  VRLLLN  356



Lambda      K        H        a         alpha
   0.318    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00020736

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395259 pfam00328, His_Phos_2, Histidine phosphatase superfami...  109     2e-28


>CDD:395259 pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 
2).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches.The smaller 
branch 2 contains predominantly eukaryotic proteins. The 
catalytic functions in members include phytase, glucose-1-phosphatase 
and multiple inositol polyphosphate phosphatase. 
The in vivo roles of the mammalian acid phosphatases in branch 
2 are not fully understood, although activity against lysophosphatidic 
acid and tyrosine-phosphorylated proteins has 
been demonstrated.
Length=356

 Score = 109 bits (273),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 50/187 (27%), Positives = 78/187 (42%), Gaps = 38/187 (20%)

Query  1    MQNICVYEHISLGGSSFCSLFTEQEWRDFAYNVDV-QYYGDYAYGSPTGRAQGIGYVLEL  59
            +  +C +E      S FC LFTE++     Y +D+ +YYG    G+   +  G   + EL
Sbjct  207  LLFLCFFETNKADLSPFCDLFTEEDALHNEYLLDLEEYYGLAGIGNELKKTIGGPLLNEL  266

Query  60   AARLQGTLIYSSDTSINFTYDNNLAQFPLDQPFYLDMSHDDILLSVITALGLRYFRYGPH  119
             ARL   L+               A FPLD   YL  +HD  + S+++ALGL        
Sbjct  267  LARLTNDLV-----------CTQEATFPLDAKLYLYFTHDTTIYSLLSALGL------FD  309

Query  120  GLPGNVDHALNRTFAMSQMTPFGARLMSEVWTCPRNASLDSLAPVLYRNPHVEHTVGTTR  179
             LP      +   ++ S   P+GARL+ E++ C                         +R
Sbjct  310  DLPPLSSLRVLDGYSASGEVPYGARLVFELYECSSE--------------------KDSR  349

Query  180  FIRFVLN  186
            ++R +LN
Sbjct  350  YVRLLLN  356



Lambda      K        H        a         alpha
   0.322    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00020737

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459818 pfam00457, Glyco_hydro_11, Glycosyl hydrolases family 11   312     1e-110


>CDD:459818 pfam00457, Glyco_hydro_11, Glycosyl hydrolases family 11.  
Length=175

 Score = 312 bits (803),  Expect = 1e-110, Method: Composition-based stats.
 Identities = 145/175 (83%), Positives = 157/175 (90%), Gaps = 0/175 (0%)

Query  50   NGYYYSFWTDGGGDVTYTNGAGGSYSVNWRNVGNFVGGKGWNPGSARTINYGGSFNPSGN  109
            NGYYYSFWTDGGG+VTYTNGAGGSYSV W N GNFVGGKGWNPGS RTINY G+FNPSGN
Sbjct  1    NGYYYSFWTDGGGNVTYTNGAGGSYSVTWSNGGNFVGGKGWNPGSNRTINYSGTFNPSGN  60

Query  110  GYLAVYGWTTNPLIEYYVVESYGTYNPGSGGTFRGTVNTDGGTYNIYTAVRYNAPSIEGT  169
             YLAVYGWTTNPL+EYY+VESYGTYNP SGGT++GTV +DGGTY+IYT  R N PSI+GT
Sbjct  61   SYLAVYGWTTNPLVEYYIVESYGTYNPSSGGTYKGTVTSDGGTYDIYTTTRVNQPSIDGT  120

Query  170  KTFTQYWSVRTSKRTGGTVTMANHFNAWSRLGMNLGTHNYQIVATEGYQSSGSAS  224
             TF QYWSVR SKRT GT+T ANHFNAW+ LG+NLGTHNYQIVATEGYQSSGSAS
Sbjct  121  ATFQQYWSVRQSKRTSGTITTANHFNAWASLGLNLGTHNYQIVATEGYQSSGSAS  175



Lambda      K        H        a         alpha
   0.313    0.131    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00026229

Length=109
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459818 pfam00457, Glyco_hydro_11, Glycosyl hydrolases family 11   92.2    1e-25


>CDD:459818 pfam00457, Glyco_hydro_11, Glycosyl hydrolases family 11.  
Length=175

 Score = 92.2 bits (230),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 42/47 (89%), Positives = 43/47 (91%), Gaps = 0/47 (0%)

Query  50  NGYYYSFWTDGGGDVTYTNGAGGSYSVNWRNVGNFVGGKGWNPGSAR  96
           NGYYYSFWTDGGG+VTYTNGAGGSYSV W N GNFVGGKGWNPGS R
Sbjct  1   NGYYYSFWTDGGGNVTYTNGAGGSYSVTWSNGGNFVGGKGWNPGSNR  47



Lambda      K        H        a         alpha
   0.314    0.131    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00020742

Length=812
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401348 pfam09364, XFP_N, XFP N-terminal domain. Bacterial enz...  605     0.0   
CDD:462772 pfam09363, XFP_C, XFP C-terminal domain. Bacterial enz...  386     6e-131
CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-ph...  334     2e-111


>CDD:401348 pfam09364, XFP_N, XFP N-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This 
family is distantly related to transketolases e.g. pfam02779.
Length=364

 Score = 605 bits (1562),  Expect = 0.0, Method: Composition-based stats.
 Identities = 219/364 (60%), Positives = 280/364 (77%), Gaps = 0/364 (0%)

Query  24   PLSQDELRKMDAYFRASMYLCLGLLYLRENPLLKEPLKVEHLKARLLGHWGSDAGQSFTW  83
             +S++ L+KMD Y+RA+ YL  G++YLR+NPLL EPLK E LK RL+GHWG+  G +F +
Sbjct  1    KISEEYLKKMDKYWRAANYLSAGMIYLRDNPLLGEPLKPEDLKHRLVGHWGTTPGLNFLY  60

Query  84   IHMNRLIKKYDLDVLFISGPGHGAPGILSQSYLEGVYTEVYPDKTQNEKGMQRFFKQFSF  143
             H+NRLI KYD ++L++ GPGHG P ++S SYL+G YTE YP+ T++E+G++R FKQFSF
Sbjct  61   AHLNRLINKYDQNMLYMVGPGHGGPAMVSPSYLDGSYTEFYPEITKDEEGLKRLFKQFSF  120

Query  144  PGGIGSHATPETPGSIHEGGELGYSISHAFGTVFDHPNLITLTIVGDGEAETGPLATSWH  203
            PGGI SH TPETPGSIHEGGELGY++SHA+G V D+P+LI   +VGDGEAETGPLATSWH
Sbjct  121  PGGIPSHMTPETPGSIHEGGELGYALSHAYGAVLDNPDLIVPCVVGDGEAETGPLATSWH  180

Query  204  SNKFLNPITDGAVLPVLHLNGYKINNPTILARISHEELEMLLRGYGWAPYFVEGSDRESM  263
            SNKF+NP TDGAVLP+LHLNGYKI+NPTILARIS EEL     G G+ PYFVE  D  SM
Sbjct  181  SNKFINPRTDGAVLPILHLNGYKISNPTILARISDEELHKFFEGMGYHPYFVENEDPMSM  240

Query  264  HQAMAATLEHCVLEIKKIQKQARESNKAFRPLWPMIVLRSPKGWSAPREIDGKYLEGFWR  323
            H+ MA T +  V EI  IQK AR ++   RP WPM++LR+PKGW+ P+ +DGK  EG +R
Sbjct  241  HRLMAETFDTAVEEIHDIQKAARTNDMTERPRWPMVILRTPKGWTGPKYVDGKKTEGSFR  300

Query  324  AHQIPITDVQSKPEHLKALENWMKAYKPEEVFDKNGTLIPELKELAPTGSSRMSANPVGN  383
            AHQ+P+   +    HL+ L+ WM++YKPEE+FD++G+L  EL   AP G  RM +NP  N
Sbjct  301  AHQVPLALARDNTAHLEQLKGWMESYKPEELFDEDGSLKEELTAFAPKGEKRMGSNPNAN  360

Query  384  GGLL  387
            GG+L
Sbjct  361  GGVL  364


>CDD:462772 pfam09363, XFP_C, XFP C-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Length=200

 Score = 386 bits (994),  Expect = 6e-131, Method: Composition-based stats.
 Identities = 117/200 (59%), Positives = 146/200 (73%), Gaps = 0/200 (0%)

Query  604  KQEHVQFLNMEEAIEHCTKGVGIWDWASNDQGSEPDVVMVSCGDVSTHEALAATALLREH  663
            KQ H Q+L+M+EAIEHCT G GIWDWAS D G EPDVV+   GD  T E LAA ALLREH
Sbjct  1    KQPHPQWLSMDEAIEHCTAGAGIWDWASTDDGEEPDVVLACAGDEPTLETLAAAALLREH  60

Query  664  LPKLKIRFVNVVDLFRLISDTNHPHGMPDRQWGAIFTTDKPIIFNFHSYPWLVHRLTYKR  723
             P LK+R VNVVDL +L   + HPHG+ D ++ A+FTTDKP+IFNFH YPWL+HRLTY+R
Sbjct  61   FPDLKVRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTTDKPVIFNFHGYPWLIHRLTYRR  120

Query  724  PGQHNLHVRGYKEKGNIDTPFELAVRNQTDRYSLAIDAIDRIPSLGNTASGVREHLINLQ  783
            P   NLHVRGYKE+G   TPF++AV N+ DR+ LAIDAIDR+P LG  A+ +R+ + +  
Sbjct  121  PNHDNLHVRGYKEEGTTTTPFDMAVLNELDRFHLAIDAIDRVPRLGAKAAELRQEMDDKL  180

Query  784  LAAKNKAFDDGIDPDYIRNW  803
            +  +    + G DP  IR+W
Sbjct  181  IEHRQYIREHGEDPPEIRDW  200


>CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-phosphate 
phosphoketolase.  Bacterial enzyme splits fructose-6-P and/or 
xylulose-5-P with the aid of inorganic phosphate into either 
acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P 
EC:4.1.2.9, EC:4.1.2.22. This family is distantly related 
to transketolases e.g. pfam02779.
Length=176

 Score = 334 bits (860),  Expect = 2e-111, Method: Composition-based stats.
 Identities = 106/177 (60%), Positives = 134/177 (76%), Gaps = 2/177 (1%)

Query  417  MSKYLRDVVARNMTTFRVVGPDETESNKLAEIYKAGKKVWMAEYFKEDEDGGNLDMHGRV  476
            + K+LRDV+  N   FR+ GPDET SN+L  +++  K+ W A      ED  +L   GRV
Sbjct  2    LGKFLRDVIKLNPDNFRIFGPDETASNRLDAVFEVTKRQWQAPI--LPEDDEHLAPDGRV  59

Query  477  MEILSEHTCEGWLEGYVLSGRHGMLNSYEPFIHVIDSMVNQHCKWLEKCLTVEWRAKVSS  536
            +E+LSEHTC+GWLEGY+L+GRHG+  SYE F H++DSM+NQH KWL+    + WRA V+S
Sbjct  60   IEVLSEHTCQGWLEGYLLTGRHGLFASYEAFAHIVDSMLNQHAKWLKMARELPWRAPVAS  119

Query  537  LNILLTATVWRQDHNGFTHQDPGFLDVVANKSPEIVRIYLPPDGNTLLSTMDHCFRS  593
            LN LLT+TVWRQDHNGF+HQDPGF+D V NK P++VR+YLPPD NTLLS MDHC RS
Sbjct  120  LNYLLTSTVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVYLPPDANTLLSVMDHCLRS  176



Lambda      K        H        a         alpha
   0.319    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1044799136


Query= TCONS_00020739

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 7...  397     3e-139


>CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76.  Family 
of alpha-1,6-mannanases.
Length=348

 Score = 397 bits (1022),  Expect = 3e-139, Method: Composition-based stats.
 Identities = 145/285 (51%), Positives = 188/285 (66%), Gaps = 8/285 (3%)

Query  5    SQPSVGSASANLSQ--GNDDQMFWGLASITASETGFPEISGKPTWTSLARVVFNMQVARW  62
            + P+     AN S   GNDDQ FWGLA++TA+E  FP  + +P+W +LA+ VFN Q +RW
Sbjct  69   AGPNYDYMPANQSTTEGNDDQGFWGLAAMTAAERNFPPPTDEPSWLALAQAVFNTQASRW  128

Query  63   DKVACDGGMRWQIWPYQAGYTMKNAISNGGLFELSARLARFTKNETYAEWANKIWDWSAS  122
            D   C GG+RWQI+P+ +GY  KN+ISNG LF+L+ARLAR+T N+TY +WA K+WDWS  
Sbjct  129  DTETCGGGLRWQIFPWNSGYDYKNSISNGCLFQLAARLARYTGNQTYLDWAEKVWDWSVD  188

Query  123  TPLLQTDRWYIADSTSNEANCKDAGNTQWSYNYGTYLSGASFMYNYTNGEDKWLKRVNGL  182
              L+  D W + D      NC D    QW+YN GTYLSGA++MYNYT G++KWL R  GL
Sbjct  189  VGLIDDDDWLVYDGADVNDNCTDINKLQWTYNQGTYLSGAAYMYNYT-GDEKWLDRAEGL  247

Query  183  LDSLIGTFCPKDKGGNVLSEVACEPIMTCDRNQIGFKGYTAMWLAHTAILVPSTAARIFP  242
            L++ +  F P    GN++ EVACEP  TC+ +Q  FKG  + WLA TA L P TA  I P
Sbjct  248  LNATLSHFFP---DGNIMYEVACEPSTTCNNDQRSFKGILSRWLALTAQLAPFTADTILP  304

Query  243  VLQGSALALSKQCS-KAPDNTCGVRWWQPTWDGFTPGLETQMAAL  286
             L+ SA A +K CS  +   TCG+RW + TWDG   GL  QM+AL
Sbjct  305  KLRASAEAAAKSCSGGSDGTTCGLRWLKGTWDG-DYGLGEQMSAL  348



Lambda      K        H        a         alpha
   0.316    0.131    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00020740

Length=812
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401348 pfam09364, XFP_N, XFP N-terminal domain. Bacterial enz...  605     0.0   
CDD:462772 pfam09363, XFP_C, XFP C-terminal domain. Bacterial enz...  386     6e-131
CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-ph...  334     2e-111


>CDD:401348 pfam09364, XFP_N, XFP N-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This 
family is distantly related to transketolases e.g. pfam02779.
Length=364

 Score = 605 bits (1562),  Expect = 0.0, Method: Composition-based stats.
 Identities = 219/364 (60%), Positives = 280/364 (77%), Gaps = 0/364 (0%)

Query  24   PLSQDELRKMDAYFRASMYLCLGLLYLRENPLLKEPLKVEHLKARLLGHWGSDAGQSFTW  83
             +S++ L+KMD Y+RA+ YL  G++YLR+NPLL EPLK E LK RL+GHWG+  G +F +
Sbjct  1    KISEEYLKKMDKYWRAANYLSAGMIYLRDNPLLGEPLKPEDLKHRLVGHWGTTPGLNFLY  60

Query  84   IHMNRLIKKYDLDVLFISGPGHGAPGILSQSYLEGVYTEVYPDKTQNEKGMQRFFKQFSF  143
             H+NRLI KYD ++L++ GPGHG P ++S SYL+G YTE YP+ T++E+G++R FKQFSF
Sbjct  61   AHLNRLINKYDQNMLYMVGPGHGGPAMVSPSYLDGSYTEFYPEITKDEEGLKRLFKQFSF  120

Query  144  PGGIGSHATPETPGSIHEGGELGYSISHAFGTVFDHPNLITLTIVGDGEAETGPLATSWH  203
            PGGI SH TPETPGSIHEGGELGY++SHA+G V D+P+LI   +VGDGEAETGPLATSWH
Sbjct  121  PGGIPSHMTPETPGSIHEGGELGYALSHAYGAVLDNPDLIVPCVVGDGEAETGPLATSWH  180

Query  204  SNKFLNPITDGAVLPVLHLNGYKINNPTILARISHEELEMLLRGYGWAPYFVEGSDRESM  263
            SNKF+NP TDGAVLP+LHLNGYKI+NPTILARIS EEL     G G+ PYFVE  D  SM
Sbjct  181  SNKFINPRTDGAVLPILHLNGYKISNPTILARISDEELHKFFEGMGYHPYFVENEDPMSM  240

Query  264  HQAMAATLEHCVLEIKKIQKQARESNKAFRPLWPMIVLRSPKGWSAPREIDGKYLEGFWR  323
            H+ MA T +  V EI  IQK AR ++   RP WPM++LR+PKGW+ P+ +DGK  EG +R
Sbjct  241  HRLMAETFDTAVEEIHDIQKAARTNDMTERPRWPMVILRTPKGWTGPKYVDGKKTEGSFR  300

Query  324  AHQIPITDVQSKPEHLKALENWMKAYKPEEVFDKNGTLIPELKELAPTGSSRMSANPVGN  383
            AHQ+P+   +    HL+ L+ WM++YKPEE+FD++G+L  EL   AP G  RM +NP  N
Sbjct  301  AHQVPLALARDNTAHLEQLKGWMESYKPEELFDEDGSLKEELTAFAPKGEKRMGSNPNAN  360

Query  384  GGLL  387
            GG+L
Sbjct  361  GGVL  364


>CDD:462772 pfam09363, XFP_C, XFP C-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Length=200

 Score = 386 bits (994),  Expect = 6e-131, Method: Composition-based stats.
 Identities = 117/200 (59%), Positives = 146/200 (73%), Gaps = 0/200 (0%)

Query  604  KQEHVQFLNMEEAIEHCTKGVGIWDWASNDQGSEPDVVMVSCGDVSTHEALAATALLREH  663
            KQ H Q+L+M+EAIEHCT G GIWDWAS D G EPDVV+   GD  T E LAA ALLREH
Sbjct  1    KQPHPQWLSMDEAIEHCTAGAGIWDWASTDDGEEPDVVLACAGDEPTLETLAAAALLREH  60

Query  664  LPKLKIRFVNVVDLFRLISDTNHPHGMPDRQWGAIFTTDKPIIFNFHSYPWLVHRLTYKR  723
             P LK+R VNVVDL +L   + HPHG+ D ++ A+FTTDKP+IFNFH YPWL+HRLTY+R
Sbjct  61   FPDLKVRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTTDKPVIFNFHGYPWLIHRLTYRR  120

Query  724  PGQHNLHVRGYKEKGNIDTPFELAVRNQTDRYSLAIDAIDRIPSLGNTASGVREHLINLQ  783
            P   NLHVRGYKE+G   TPF++AV N+ DR+ LAIDAIDR+P LG  A+ +R+ + +  
Sbjct  121  PNHDNLHVRGYKEEGTTTTPFDMAVLNELDRFHLAIDAIDRVPRLGAKAAELRQEMDDKL  180

Query  784  LAAKNKAFDDGIDPDYIRNW  803
            +  +    + G DP  IR+W
Sbjct  181  IEHRQYIREHGEDPPEIRDW  200


>CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-phosphate 
phosphoketolase.  Bacterial enzyme splits fructose-6-P and/or 
xylulose-5-P with the aid of inorganic phosphate into either 
acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P 
EC:4.1.2.9, EC:4.1.2.22. This family is distantly related 
to transketolases e.g. pfam02779.
Length=176

 Score = 334 bits (860),  Expect = 2e-111, Method: Composition-based stats.
 Identities = 106/177 (60%), Positives = 134/177 (76%), Gaps = 2/177 (1%)

Query  417  MSKYLRDVVARNMTTFRVVGPDETESNKLAEIYKAGKKVWMAEYFKEDEDGGNLDMHGRV  476
            + K+LRDV+  N   FR+ GPDET SN+L  +++  K+ W A      ED  +L   GRV
Sbjct  2    LGKFLRDVIKLNPDNFRIFGPDETASNRLDAVFEVTKRQWQAPI--LPEDDEHLAPDGRV  59

Query  477  MEILSEHTCEGWLEGYVLSGRHGMLNSYEPFIHVIDSMVNQHCKWLEKCLTVEWRAKVSS  536
            +E+LSEHTC+GWLEGY+L+GRHG+  SYE F H++DSM+NQH KWL+    + WRA V+S
Sbjct  60   IEVLSEHTCQGWLEGYLLTGRHGLFASYEAFAHIVDSMLNQHAKWLKMARELPWRAPVAS  119

Query  537  LNILLTATVWRQDHNGFTHQDPGFLDVVANKSPEIVRIYLPPDGNTLLSTMDHCFRS  593
            LN LLT+TVWRQDHNGF+HQDPGF+D V NK P++VR+YLPPD NTLLS MDHC RS
Sbjct  120  LNYLLTSTVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVYLPPDANTLLSVMDHCLRS  176



Lambda      K        H        a         alpha
   0.319    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1044799136


Query= TCONS_00026230

Length=812
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401348 pfam09364, XFP_N, XFP N-terminal domain. Bacterial enz...  605     0.0   
CDD:462772 pfam09363, XFP_C, XFP C-terminal domain. Bacterial enz...  386     6e-131
CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-ph...  334     2e-111


>CDD:401348 pfam09364, XFP_N, XFP N-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This 
family is distantly related to transketolases e.g. pfam02779.
Length=364

 Score = 605 bits (1562),  Expect = 0.0, Method: Composition-based stats.
 Identities = 219/364 (60%), Positives = 280/364 (77%), Gaps = 0/364 (0%)

Query  24   PLSQDELRKMDAYFRASMYLCLGLLYLRENPLLKEPLKVEHLKARLLGHWGSDAGQSFTW  83
             +S++ L+KMD Y+RA+ YL  G++YLR+NPLL EPLK E LK RL+GHWG+  G +F +
Sbjct  1    KISEEYLKKMDKYWRAANYLSAGMIYLRDNPLLGEPLKPEDLKHRLVGHWGTTPGLNFLY  60

Query  84   IHMNRLIKKYDLDVLFISGPGHGAPGILSQSYLEGVYTEVYPDKTQNEKGMQRFFKQFSF  143
             H+NRLI KYD ++L++ GPGHG P ++S SYL+G YTE YP+ T++E+G++R FKQFSF
Sbjct  61   AHLNRLINKYDQNMLYMVGPGHGGPAMVSPSYLDGSYTEFYPEITKDEEGLKRLFKQFSF  120

Query  144  PGGIGSHATPETPGSIHEGGELGYSISHAFGTVFDHPNLITLTIVGDGEAETGPLATSWH  203
            PGGI SH TPETPGSIHEGGELGY++SHA+G V D+P+LI   +VGDGEAETGPLATSWH
Sbjct  121  PGGIPSHMTPETPGSIHEGGELGYALSHAYGAVLDNPDLIVPCVVGDGEAETGPLATSWH  180

Query  204  SNKFLNPITDGAVLPVLHLNGYKINNPTILARISHEELEMLLRGYGWAPYFVEGSDRESM  263
            SNKF+NP TDGAVLP+LHLNGYKI+NPTILARIS EEL     G G+ PYFVE  D  SM
Sbjct  181  SNKFINPRTDGAVLPILHLNGYKISNPTILARISDEELHKFFEGMGYHPYFVENEDPMSM  240

Query  264  HQAMAATLEHCVLEIKKIQKQARESNKAFRPLWPMIVLRSPKGWSAPREIDGKYLEGFWR  323
            H+ MA T +  V EI  IQK AR ++   RP WPM++LR+PKGW+ P+ +DGK  EG +R
Sbjct  241  HRLMAETFDTAVEEIHDIQKAARTNDMTERPRWPMVILRTPKGWTGPKYVDGKKTEGSFR  300

Query  324  AHQIPITDVQSKPEHLKALENWMKAYKPEEVFDKNGTLIPELKELAPTGSSRMSANPVGN  383
            AHQ+P+   +    HL+ L+ WM++YKPEE+FD++G+L  EL   AP G  RM +NP  N
Sbjct  301  AHQVPLALARDNTAHLEQLKGWMESYKPEELFDEDGSLKEELTAFAPKGEKRMGSNPNAN  360

Query  384  GGLL  387
            GG+L
Sbjct  361  GGVL  364


>CDD:462772 pfam09363, XFP_C, XFP C-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Length=200

 Score = 386 bits (994),  Expect = 6e-131, Method: Composition-based stats.
 Identities = 117/200 (59%), Positives = 146/200 (73%), Gaps = 0/200 (0%)

Query  604  KQEHVQFLNMEEAIEHCTKGVGIWDWASNDQGSEPDVVMVSCGDVSTHEALAATALLREH  663
            KQ H Q+L+M+EAIEHCT G GIWDWAS D G EPDVV+   GD  T E LAA ALLREH
Sbjct  1    KQPHPQWLSMDEAIEHCTAGAGIWDWASTDDGEEPDVVLACAGDEPTLETLAAAALLREH  60

Query  664  LPKLKIRFVNVVDLFRLISDTNHPHGMPDRQWGAIFTTDKPIIFNFHSYPWLVHRLTYKR  723
             P LK+R VNVVDL +L   + HPHG+ D ++ A+FTTDKP+IFNFH YPWL+HRLTY+R
Sbjct  61   FPDLKVRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTTDKPVIFNFHGYPWLIHRLTYRR  120

Query  724  PGQHNLHVRGYKEKGNIDTPFELAVRNQTDRYSLAIDAIDRIPSLGNTASGVREHLINLQ  783
            P   NLHVRGYKE+G   TPF++AV N+ DR+ LAIDAIDR+P LG  A+ +R+ + +  
Sbjct  121  PNHDNLHVRGYKEEGTTTTPFDMAVLNELDRFHLAIDAIDRVPRLGAKAAELRQEMDDKL  180

Query  784  LAAKNKAFDDGIDPDYIRNW  803
            +  +    + G DP  IR+W
Sbjct  181  IEHRQYIREHGEDPPEIRDW  200


>CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-phosphate 
phosphoketolase.  Bacterial enzyme splits fructose-6-P and/or 
xylulose-5-P with the aid of inorganic phosphate into either 
acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P 
EC:4.1.2.9, EC:4.1.2.22. This family is distantly related 
to transketolases e.g. pfam02779.
Length=176

 Score = 334 bits (860),  Expect = 2e-111, Method: Composition-based stats.
 Identities = 106/177 (60%), Positives = 134/177 (76%), Gaps = 2/177 (1%)

Query  417  MSKYLRDVVARNMTTFRVVGPDETESNKLAEIYKAGKKVWMAEYFKEDEDGGNLDMHGRV  476
            + K+LRDV+  N   FR+ GPDET SN+L  +++  K+ W A      ED  +L   GRV
Sbjct  2    LGKFLRDVIKLNPDNFRIFGPDETASNRLDAVFEVTKRQWQAPI--LPEDDEHLAPDGRV  59

Query  477  MEILSEHTCEGWLEGYVLSGRHGMLNSYEPFIHVIDSMVNQHCKWLEKCLTVEWRAKVSS  536
            +E+LSEHTC+GWLEGY+L+GRHG+  SYE F H++DSM+NQH KWL+    + WRA V+S
Sbjct  60   IEVLSEHTCQGWLEGYLLTGRHGLFASYEAFAHIVDSMLNQHAKWLKMARELPWRAPVAS  119

Query  537  LNILLTATVWRQDHNGFTHQDPGFLDVVANKSPEIVRIYLPPDGNTLLSTMDHCFRS  593
            LN LLT+TVWRQDHNGF+HQDPGF+D V NK P++VR+YLPPD NTLLS MDHC RS
Sbjct  120  LNYLLTSTVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVYLPPDANTLLSVMDHCLRS  176



Lambda      K        H        a         alpha
   0.319    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1044799136


Query= TCONS_00026231

Length=812
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401348 pfam09364, XFP_N, XFP N-terminal domain. Bacterial enz...  605     0.0   
CDD:462772 pfam09363, XFP_C, XFP C-terminal domain. Bacterial enz...  386     6e-131
CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-ph...  334     2e-111


>CDD:401348 pfam09364, XFP_N, XFP N-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This 
family is distantly related to transketolases e.g. pfam02779.
Length=364

 Score = 605 bits (1562),  Expect = 0.0, Method: Composition-based stats.
 Identities = 219/364 (60%), Positives = 280/364 (77%), Gaps = 0/364 (0%)

Query  24   PLSQDELRKMDAYFRASMYLCLGLLYLRENPLLKEPLKVEHLKARLLGHWGSDAGQSFTW  83
             +S++ L+KMD Y+RA+ YL  G++YLR+NPLL EPLK E LK RL+GHWG+  G +F +
Sbjct  1    KISEEYLKKMDKYWRAANYLSAGMIYLRDNPLLGEPLKPEDLKHRLVGHWGTTPGLNFLY  60

Query  84   IHMNRLIKKYDLDVLFISGPGHGAPGILSQSYLEGVYTEVYPDKTQNEKGMQRFFKQFSF  143
             H+NRLI KYD ++L++ GPGHG P ++S SYL+G YTE YP+ T++E+G++R FKQFSF
Sbjct  61   AHLNRLINKYDQNMLYMVGPGHGGPAMVSPSYLDGSYTEFYPEITKDEEGLKRLFKQFSF  120

Query  144  PGGIGSHATPETPGSIHEGGELGYSISHAFGTVFDHPNLITLTIVGDGEAETGPLATSWH  203
            PGGI SH TPETPGSIHEGGELGY++SHA+G V D+P+LI   +VGDGEAETGPLATSWH
Sbjct  121  PGGIPSHMTPETPGSIHEGGELGYALSHAYGAVLDNPDLIVPCVVGDGEAETGPLATSWH  180

Query  204  SNKFLNPITDGAVLPVLHLNGYKINNPTILARISHEELEMLLRGYGWAPYFVEGSDRESM  263
            SNKF+NP TDGAVLP+LHLNGYKI+NPTILARIS EEL     G G+ PYFVE  D  SM
Sbjct  181  SNKFINPRTDGAVLPILHLNGYKISNPTILARISDEELHKFFEGMGYHPYFVENEDPMSM  240

Query  264  HQAMAATLEHCVLEIKKIQKQARESNKAFRPLWPMIVLRSPKGWSAPREIDGKYLEGFWR  323
            H+ MA T +  V EI  IQK AR ++   RP WPM++LR+PKGW+ P+ +DGK  EG +R
Sbjct  241  HRLMAETFDTAVEEIHDIQKAARTNDMTERPRWPMVILRTPKGWTGPKYVDGKKTEGSFR  300

Query  324  AHQIPITDVQSKPEHLKALENWMKAYKPEEVFDKNGTLIPELKELAPTGSSRMSANPVGN  383
            AHQ+P+   +    HL+ L+ WM++YKPEE+FD++G+L  EL   AP G  RM +NP  N
Sbjct  301  AHQVPLALARDNTAHLEQLKGWMESYKPEELFDEDGSLKEELTAFAPKGEKRMGSNPNAN  360

Query  384  GGLL  387
            GG+L
Sbjct  361  GGVL  364


>CDD:462772 pfam09363, XFP_C, XFP C-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Length=200

 Score = 386 bits (994),  Expect = 6e-131, Method: Composition-based stats.
 Identities = 117/200 (59%), Positives = 146/200 (73%), Gaps = 0/200 (0%)

Query  604  KQEHVQFLNMEEAIEHCTKGVGIWDWASNDQGSEPDVVMVSCGDVSTHEALAATALLREH  663
            KQ H Q+L+M+EAIEHCT G GIWDWAS D G EPDVV+   GD  T E LAA ALLREH
Sbjct  1    KQPHPQWLSMDEAIEHCTAGAGIWDWASTDDGEEPDVVLACAGDEPTLETLAAAALLREH  60

Query  664  LPKLKIRFVNVVDLFRLISDTNHPHGMPDRQWGAIFTTDKPIIFNFHSYPWLVHRLTYKR  723
             P LK+R VNVVDL +L   + HPHG+ D ++ A+FTTDKP+IFNFH YPWL+HRLTY+R
Sbjct  61   FPDLKVRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTTDKPVIFNFHGYPWLIHRLTYRR  120

Query  724  PGQHNLHVRGYKEKGNIDTPFELAVRNQTDRYSLAIDAIDRIPSLGNTASGVREHLINLQ  783
            P   NLHVRGYKE+G   TPF++AV N+ DR+ LAIDAIDR+P LG  A+ +R+ + +  
Sbjct  121  PNHDNLHVRGYKEEGTTTTPFDMAVLNELDRFHLAIDAIDRVPRLGAKAAELRQEMDDKL  180

Query  784  LAAKNKAFDDGIDPDYIRNW  803
            +  +    + G DP  IR+W
Sbjct  181  IEHRQYIREHGEDPPEIRDW  200


>CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-phosphate 
phosphoketolase.  Bacterial enzyme splits fructose-6-P and/or 
xylulose-5-P with the aid of inorganic phosphate into either 
acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P 
EC:4.1.2.9, EC:4.1.2.22. This family is distantly related 
to transketolases e.g. pfam02779.
Length=176

 Score = 334 bits (860),  Expect = 2e-111, Method: Composition-based stats.
 Identities = 106/177 (60%), Positives = 134/177 (76%), Gaps = 2/177 (1%)

Query  417  MSKYLRDVVARNMTTFRVVGPDETESNKLAEIYKAGKKVWMAEYFKEDEDGGNLDMHGRV  476
            + K+LRDV+  N   FR+ GPDET SN+L  +++  K+ W A      ED  +L   GRV
Sbjct  2    LGKFLRDVIKLNPDNFRIFGPDETASNRLDAVFEVTKRQWQAPI--LPEDDEHLAPDGRV  59

Query  477  MEILSEHTCEGWLEGYVLSGRHGMLNSYEPFIHVIDSMVNQHCKWLEKCLTVEWRAKVSS  536
            +E+LSEHTC+GWLEGY+L+GRHG+  SYE F H++DSM+NQH KWL+    + WRA V+S
Sbjct  60   IEVLSEHTCQGWLEGYLLTGRHGLFASYEAFAHIVDSMLNQHAKWLKMARELPWRAPVAS  119

Query  537  LNILLTATVWRQDHNGFTHQDPGFLDVVANKSPEIVRIYLPPDGNTLLSTMDHCFRS  593
            LN LLT+TVWRQDHNGF+HQDPGF+D V NK P++VR+YLPPD NTLLS MDHC RS
Sbjct  120  LNYLLTSTVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVYLPPDANTLLSVMDHCLRS  176



Lambda      K        H        a         alpha
   0.319    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1044799136


Query= TCONS_00020738

Length=812
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401348 pfam09364, XFP_N, XFP N-terminal domain. Bacterial enz...  605     0.0   
CDD:462772 pfam09363, XFP_C, XFP C-terminal domain. Bacterial enz...  386     6e-131
CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-ph...  334     2e-111


>CDD:401348 pfam09364, XFP_N, XFP N-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This 
family is distantly related to transketolases e.g. pfam02779.
Length=364

 Score = 605 bits (1562),  Expect = 0.0, Method: Composition-based stats.
 Identities = 219/364 (60%), Positives = 280/364 (77%), Gaps = 0/364 (0%)

Query  24   PLSQDELRKMDAYFRASMYLCLGLLYLRENPLLKEPLKVEHLKARLLGHWGSDAGQSFTW  83
             +S++ L+KMD Y+RA+ YL  G++YLR+NPLL EPLK E LK RL+GHWG+  G +F +
Sbjct  1    KISEEYLKKMDKYWRAANYLSAGMIYLRDNPLLGEPLKPEDLKHRLVGHWGTTPGLNFLY  60

Query  84   IHMNRLIKKYDLDVLFISGPGHGAPGILSQSYLEGVYTEVYPDKTQNEKGMQRFFKQFSF  143
             H+NRLI KYD ++L++ GPGHG P ++S SYL+G YTE YP+ T++E+G++R FKQFSF
Sbjct  61   AHLNRLINKYDQNMLYMVGPGHGGPAMVSPSYLDGSYTEFYPEITKDEEGLKRLFKQFSF  120

Query  144  PGGIGSHATPETPGSIHEGGELGYSISHAFGTVFDHPNLITLTIVGDGEAETGPLATSWH  203
            PGGI SH TPETPGSIHEGGELGY++SHA+G V D+P+LI   +VGDGEAETGPLATSWH
Sbjct  121  PGGIPSHMTPETPGSIHEGGELGYALSHAYGAVLDNPDLIVPCVVGDGEAETGPLATSWH  180

Query  204  SNKFLNPITDGAVLPVLHLNGYKINNPTILARISHEELEMLLRGYGWAPYFVEGSDRESM  263
            SNKF+NP TDGAVLP+LHLNGYKI+NPTILARIS EEL     G G+ PYFVE  D  SM
Sbjct  181  SNKFINPRTDGAVLPILHLNGYKISNPTILARISDEELHKFFEGMGYHPYFVENEDPMSM  240

Query  264  HQAMAATLEHCVLEIKKIQKQARESNKAFRPLWPMIVLRSPKGWSAPREIDGKYLEGFWR  323
            H+ MA T +  V EI  IQK AR ++   RP WPM++LR+PKGW+ P+ +DGK  EG +R
Sbjct  241  HRLMAETFDTAVEEIHDIQKAARTNDMTERPRWPMVILRTPKGWTGPKYVDGKKTEGSFR  300

Query  324  AHQIPITDVQSKPEHLKALENWMKAYKPEEVFDKNGTLIPELKELAPTGSSRMSANPVGN  383
            AHQ+P+   +    HL+ L+ WM++YKPEE+FD++G+L  EL   AP G  RM +NP  N
Sbjct  301  AHQVPLALARDNTAHLEQLKGWMESYKPEELFDEDGSLKEELTAFAPKGEKRMGSNPNAN  360

Query  384  GGLL  387
            GG+L
Sbjct  361  GGVL  364


>CDD:462772 pfam09363, XFP_C, XFP C-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Length=200

 Score = 386 bits (994),  Expect = 6e-131, Method: Composition-based stats.
 Identities = 117/200 (59%), Positives = 146/200 (73%), Gaps = 0/200 (0%)

Query  604  KQEHVQFLNMEEAIEHCTKGVGIWDWASNDQGSEPDVVMVSCGDVSTHEALAATALLREH  663
            KQ H Q+L+M+EAIEHCT G GIWDWAS D G EPDVV+   GD  T E LAA ALLREH
Sbjct  1    KQPHPQWLSMDEAIEHCTAGAGIWDWASTDDGEEPDVVLACAGDEPTLETLAAAALLREH  60

Query  664  LPKLKIRFVNVVDLFRLISDTNHPHGMPDRQWGAIFTTDKPIIFNFHSYPWLVHRLTYKR  723
             P LK+R VNVVDL +L   + HPHG+ D ++ A+FTTDKP+IFNFH YPWL+HRLTY+R
Sbjct  61   FPDLKVRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTTDKPVIFNFHGYPWLIHRLTYRR  120

Query  724  PGQHNLHVRGYKEKGNIDTPFELAVRNQTDRYSLAIDAIDRIPSLGNTASGVREHLINLQ  783
            P   NLHVRGYKE+G   TPF++AV N+ DR+ LAIDAIDR+P LG  A+ +R+ + +  
Sbjct  121  PNHDNLHVRGYKEEGTTTTPFDMAVLNELDRFHLAIDAIDRVPRLGAKAAELRQEMDDKL  180

Query  784  LAAKNKAFDDGIDPDYIRNW  803
            +  +    + G DP  IR+W
Sbjct  181  IEHRQYIREHGEDPPEIRDW  200


>CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-phosphate 
phosphoketolase.  Bacterial enzyme splits fructose-6-P and/or 
xylulose-5-P with the aid of inorganic phosphate into either 
acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P 
EC:4.1.2.9, EC:4.1.2.22. This family is distantly related 
to transketolases e.g. pfam02779.
Length=176

 Score = 334 bits (860),  Expect = 2e-111, Method: Composition-based stats.
 Identities = 106/177 (60%), Positives = 134/177 (76%), Gaps = 2/177 (1%)

Query  417  MSKYLRDVVARNMTTFRVVGPDETESNKLAEIYKAGKKVWMAEYFKEDEDGGNLDMHGRV  476
            + K+LRDV+  N   FR+ GPDET SN+L  +++  K+ W A      ED  +L   GRV
Sbjct  2    LGKFLRDVIKLNPDNFRIFGPDETASNRLDAVFEVTKRQWQAPI--LPEDDEHLAPDGRV  59

Query  477  MEILSEHTCEGWLEGYVLSGRHGMLNSYEPFIHVIDSMVNQHCKWLEKCLTVEWRAKVSS  536
            +E+LSEHTC+GWLEGY+L+GRHG+  SYE F H++DSM+NQH KWL+    + WRA V+S
Sbjct  60   IEVLSEHTCQGWLEGYLLTGRHGLFASYEAFAHIVDSMLNQHAKWLKMARELPWRAPVAS  119

Query  537  LNILLTATVWRQDHNGFTHQDPGFLDVVANKSPEIVRIYLPPDGNTLLSTMDHCFRS  593
            LN LLT+TVWRQDHNGF+HQDPGF+D V NK P++VR+YLPPD NTLLS MDHC RS
Sbjct  120  LNYLLTSTVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVYLPPDANTLLSVMDHCLRS  176



Lambda      K        H        a         alpha
   0.319    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1044799136


Query= TCONS_00020741

Length=812
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401348 pfam09364, XFP_N, XFP N-terminal domain. Bacterial enz...  605     0.0   
CDD:462772 pfam09363, XFP_C, XFP C-terminal domain. Bacterial enz...  386     6e-131
CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-ph...  334     2e-111


>CDD:401348 pfam09364, XFP_N, XFP N-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This 
family is distantly related to transketolases e.g. pfam02779.
Length=364

 Score = 605 bits (1562),  Expect = 0.0, Method: Composition-based stats.
 Identities = 219/364 (60%), Positives = 280/364 (77%), Gaps = 0/364 (0%)

Query  24   PLSQDELRKMDAYFRASMYLCLGLLYLRENPLLKEPLKVEHLKARLLGHWGSDAGQSFTW  83
             +S++ L+KMD Y+RA+ YL  G++YLR+NPLL EPLK E LK RL+GHWG+  G +F +
Sbjct  1    KISEEYLKKMDKYWRAANYLSAGMIYLRDNPLLGEPLKPEDLKHRLVGHWGTTPGLNFLY  60

Query  84   IHMNRLIKKYDLDVLFISGPGHGAPGILSQSYLEGVYTEVYPDKTQNEKGMQRFFKQFSF  143
             H+NRLI KYD ++L++ GPGHG P ++S SYL+G YTE YP+ T++E+G++R FKQFSF
Sbjct  61   AHLNRLINKYDQNMLYMVGPGHGGPAMVSPSYLDGSYTEFYPEITKDEEGLKRLFKQFSF  120

Query  144  PGGIGSHATPETPGSIHEGGELGYSISHAFGTVFDHPNLITLTIVGDGEAETGPLATSWH  203
            PGGI SH TPETPGSIHEGGELGY++SHA+G V D+P+LI   +VGDGEAETGPLATSWH
Sbjct  121  PGGIPSHMTPETPGSIHEGGELGYALSHAYGAVLDNPDLIVPCVVGDGEAETGPLATSWH  180

Query  204  SNKFLNPITDGAVLPVLHLNGYKINNPTILARISHEELEMLLRGYGWAPYFVEGSDRESM  263
            SNKF+NP TDGAVLP+LHLNGYKI+NPTILARIS EEL     G G+ PYFVE  D  SM
Sbjct  181  SNKFINPRTDGAVLPILHLNGYKISNPTILARISDEELHKFFEGMGYHPYFVENEDPMSM  240

Query  264  HQAMAATLEHCVLEIKKIQKQARESNKAFRPLWPMIVLRSPKGWSAPREIDGKYLEGFWR  323
            H+ MA T +  V EI  IQK AR ++   RP WPM++LR+PKGW+ P+ +DGK  EG +R
Sbjct  241  HRLMAETFDTAVEEIHDIQKAARTNDMTERPRWPMVILRTPKGWTGPKYVDGKKTEGSFR  300

Query  324  AHQIPITDVQSKPEHLKALENWMKAYKPEEVFDKNGTLIPELKELAPTGSSRMSANPVGN  383
            AHQ+P+   +    HL+ L+ WM++YKPEE+FD++G+L  EL   AP G  RM +NP  N
Sbjct  301  AHQVPLALARDNTAHLEQLKGWMESYKPEELFDEDGSLKEELTAFAPKGEKRMGSNPNAN  360

Query  384  GGLL  387
            GG+L
Sbjct  361  GGVL  364


>CDD:462772 pfam09363, XFP_C, XFP C-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Length=200

 Score = 386 bits (994),  Expect = 6e-131, Method: Composition-based stats.
 Identities = 117/200 (59%), Positives = 146/200 (73%), Gaps = 0/200 (0%)

Query  604  KQEHVQFLNMEEAIEHCTKGVGIWDWASNDQGSEPDVVMVSCGDVSTHEALAATALLREH  663
            KQ H Q+L+M+EAIEHCT G GIWDWAS D G EPDVV+   GD  T E LAA ALLREH
Sbjct  1    KQPHPQWLSMDEAIEHCTAGAGIWDWASTDDGEEPDVVLACAGDEPTLETLAAAALLREH  60

Query  664  LPKLKIRFVNVVDLFRLISDTNHPHGMPDRQWGAIFTTDKPIIFNFHSYPWLVHRLTYKR  723
             P LK+R VNVVDL +L   + HPHG+ D ++ A+FTTDKP+IFNFH YPWL+HRLTY+R
Sbjct  61   FPDLKVRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTTDKPVIFNFHGYPWLIHRLTYRR  120

Query  724  PGQHNLHVRGYKEKGNIDTPFELAVRNQTDRYSLAIDAIDRIPSLGNTASGVREHLINLQ  783
            P   NLHVRGYKE+G   TPF++AV N+ DR+ LAIDAIDR+P LG  A+ +R+ + +  
Sbjct  121  PNHDNLHVRGYKEEGTTTTPFDMAVLNELDRFHLAIDAIDRVPRLGAKAAELRQEMDDKL  180

Query  784  LAAKNKAFDDGIDPDYIRNW  803
            +  +    + G DP  IR+W
Sbjct  181  IEHRQYIREHGEDPPEIRDW  200


>CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-phosphate 
phosphoketolase.  Bacterial enzyme splits fructose-6-P and/or 
xylulose-5-P with the aid of inorganic phosphate into either 
acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P 
EC:4.1.2.9, EC:4.1.2.22. This family is distantly related 
to transketolases e.g. pfam02779.
Length=176

 Score = 334 bits (860),  Expect = 2e-111, Method: Composition-based stats.
 Identities = 106/177 (60%), Positives = 134/177 (76%), Gaps = 2/177 (1%)

Query  417  MSKYLRDVVARNMTTFRVVGPDETESNKLAEIYKAGKKVWMAEYFKEDEDGGNLDMHGRV  476
            + K+LRDV+  N   FR+ GPDET SN+L  +++  K+ W A      ED  +L   GRV
Sbjct  2    LGKFLRDVIKLNPDNFRIFGPDETASNRLDAVFEVTKRQWQAPI--LPEDDEHLAPDGRV  59

Query  477  MEILSEHTCEGWLEGYVLSGRHGMLNSYEPFIHVIDSMVNQHCKWLEKCLTVEWRAKVSS  536
            +E+LSEHTC+GWLEGY+L+GRHG+  SYE F H++DSM+NQH KWL+    + WRA V+S
Sbjct  60   IEVLSEHTCQGWLEGYLLTGRHGLFASYEAFAHIVDSMLNQHAKWLKMARELPWRAPVAS  119

Query  537  LNILLTATVWRQDHNGFTHQDPGFLDVVANKSPEIVRIYLPPDGNTLLSTMDHCFRS  593
            LN LLT+TVWRQDHNGF+HQDPGF+D V NK P++VR+YLPPD NTLLS MDHC RS
Sbjct  120  LNYLLTSTVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVYLPPDANTLLSVMDHCLRS  176



Lambda      K        H        a         alpha
   0.319    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1044799136


Query= TCONS_00020743

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 7...  390     1e-137


>CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76.  Family 
of alpha-1,6-mannanases.
Length=348

 Score = 390 bits (1005),  Expect = 1e-137, Method: Composition-based stats.
 Identities = 136/270 (50%), Positives = 183/270 (68%), Gaps = 6/270 (2%)

Query  35   SLKSAAKTVAAPMMDFYDKNQTEGIPGKLTGT--WYVAGAMFMTLIQYWQSSGDDTYNSI  92
            S+KSAA T+A  +MD+Y+ N+  G PG L     W+ AGAMF  LI YW  +GD TYN +
Sbjct  1    SIKSAAATIAQGLMDYYNGNEPGGTPGMLPDPYYWWEAGAMFGALIDYWYYTGDSTYNDL  60

Query  93   VSHDLMFQSGENYDFFSGNYSQWLVNDDQMFWGLASITASETGFPEISGKPTWTSLARVV  152
            ++  L++Q+G NYD+   N S    NDDQ FWGLA++TA+E  FP  + +P+W +LA+ V
Sbjct  61   ITQALLYQAGPNYDYMPANQSTTEGNDDQGFWGLAAMTAAERNFPPPTDEPSWLALAQAV  120

Query  153  FNMQVARWDKVACDGGMRWQIWPYQAGYTMKNAISNGGLFELSARLARFTKNETYAEWAN  212
            FN Q +RWD   C GG+RWQI+P+ +GY  KN+ISNG LF+L+ARLAR+T N+TY +WA 
Sbjct  121  FNTQASRWDTETCGGGLRWQIFPWNSGYDYKNSISNGCLFQLAARLARYTGNQTYLDWAE  180

Query  213  KIWDWSASTPLLQTDRWYIADSTSNEANCKDAGNTQWSYNYGTYLSGASFMYNYTNGEDK  272
            K+WDWS    L+  D W + D      NC D    QW+YN GTYLSGA++MYNYT G++K
Sbjct  181  KVWDWSVDVGLIDDDDWLVYDGADVNDNCTDINKLQWTYNQGTYLSGAAYMYNYT-GDEK  239

Query  273  WLKRVNGLLDSLIGTFCPKDKGGNVLSEVA  302
            WL R  GLL++ +  F P    GN++ EVA
Sbjct  240  WLDRAEGLLNATLSHFFP---DGNIMYEVA  266



Lambda      K        H        a         alpha
   0.317    0.131    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00020744

Length=812
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401348 pfam09364, XFP_N, XFP N-terminal domain. Bacterial enz...  605     0.0   
CDD:462772 pfam09363, XFP_C, XFP C-terminal domain. Bacterial enz...  386     6e-131
CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-ph...  334     2e-111


>CDD:401348 pfam09364, XFP_N, XFP N-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This 
family is distantly related to transketolases e.g. pfam02779.
Length=364

 Score = 605 bits (1562),  Expect = 0.0, Method: Composition-based stats.
 Identities = 219/364 (60%), Positives = 280/364 (77%), Gaps = 0/364 (0%)

Query  24   PLSQDELRKMDAYFRASMYLCLGLLYLRENPLLKEPLKVEHLKARLLGHWGSDAGQSFTW  83
             +S++ L+KMD Y+RA+ YL  G++YLR+NPLL EPLK E LK RL+GHWG+  G +F +
Sbjct  1    KISEEYLKKMDKYWRAANYLSAGMIYLRDNPLLGEPLKPEDLKHRLVGHWGTTPGLNFLY  60

Query  84   IHMNRLIKKYDLDVLFISGPGHGAPGILSQSYLEGVYTEVYPDKTQNEKGMQRFFKQFSF  143
             H+NRLI KYD ++L++ GPGHG P ++S SYL+G YTE YP+ T++E+G++R FKQFSF
Sbjct  61   AHLNRLINKYDQNMLYMVGPGHGGPAMVSPSYLDGSYTEFYPEITKDEEGLKRLFKQFSF  120

Query  144  PGGIGSHATPETPGSIHEGGELGYSISHAFGTVFDHPNLITLTIVGDGEAETGPLATSWH  203
            PGGI SH TPETPGSIHEGGELGY++SHA+G V D+P+LI   +VGDGEAETGPLATSWH
Sbjct  121  PGGIPSHMTPETPGSIHEGGELGYALSHAYGAVLDNPDLIVPCVVGDGEAETGPLATSWH  180

Query  204  SNKFLNPITDGAVLPVLHLNGYKINNPTILARISHEELEMLLRGYGWAPYFVEGSDRESM  263
            SNKF+NP TDGAVLP+LHLNGYKI+NPTILARIS EEL     G G+ PYFVE  D  SM
Sbjct  181  SNKFINPRTDGAVLPILHLNGYKISNPTILARISDEELHKFFEGMGYHPYFVENEDPMSM  240

Query  264  HQAMAATLEHCVLEIKKIQKQARESNKAFRPLWPMIVLRSPKGWSAPREIDGKYLEGFWR  323
            H+ MA T +  V EI  IQK AR ++   RP WPM++LR+PKGW+ P+ +DGK  EG +R
Sbjct  241  HRLMAETFDTAVEEIHDIQKAARTNDMTERPRWPMVILRTPKGWTGPKYVDGKKTEGSFR  300

Query  324  AHQIPITDVQSKPEHLKALENWMKAYKPEEVFDKNGTLIPELKELAPTGSSRMSANPVGN  383
            AHQ+P+   +    HL+ L+ WM++YKPEE+FD++G+L  EL   AP G  RM +NP  N
Sbjct  301  AHQVPLALARDNTAHLEQLKGWMESYKPEELFDEDGSLKEELTAFAPKGEKRMGSNPNAN  360

Query  384  GGLL  387
            GG+L
Sbjct  361  GGVL  364


>CDD:462772 pfam09363, XFP_C, XFP C-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Length=200

 Score = 386 bits (994),  Expect = 6e-131, Method: Composition-based stats.
 Identities = 117/200 (59%), Positives = 146/200 (73%), Gaps = 0/200 (0%)

Query  604  KQEHVQFLNMEEAIEHCTKGVGIWDWASNDQGSEPDVVMVSCGDVSTHEALAATALLREH  663
            KQ H Q+L+M+EAIEHCT G GIWDWAS D G EPDVV+   GD  T E LAA ALLREH
Sbjct  1    KQPHPQWLSMDEAIEHCTAGAGIWDWASTDDGEEPDVVLACAGDEPTLETLAAAALLREH  60

Query  664  LPKLKIRFVNVVDLFRLISDTNHPHGMPDRQWGAIFTTDKPIIFNFHSYPWLVHRLTYKR  723
             P LK+R VNVVDL +L   + HPHG+ D ++ A+FTTDKP+IFNFH YPWL+HRLTY+R
Sbjct  61   FPDLKVRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTTDKPVIFNFHGYPWLIHRLTYRR  120

Query  724  PGQHNLHVRGYKEKGNIDTPFELAVRNQTDRYSLAIDAIDRIPSLGNTASGVREHLINLQ  783
            P   NLHVRGYKE+G   TPF++AV N+ DR+ LAIDAIDR+P LG  A+ +R+ + +  
Sbjct  121  PNHDNLHVRGYKEEGTTTTPFDMAVLNELDRFHLAIDAIDRVPRLGAKAAELRQEMDDKL  180

Query  784  LAAKNKAFDDGIDPDYIRNW  803
            +  +    + G DP  IR+W
Sbjct  181  IEHRQYIREHGEDPPEIRDW  200


>CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-phosphate 
phosphoketolase.  Bacterial enzyme splits fructose-6-P and/or 
xylulose-5-P with the aid of inorganic phosphate into either 
acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P 
EC:4.1.2.9, EC:4.1.2.22. This family is distantly related 
to transketolases e.g. pfam02779.
Length=176

 Score = 334 bits (860),  Expect = 2e-111, Method: Composition-based stats.
 Identities = 106/177 (60%), Positives = 134/177 (76%), Gaps = 2/177 (1%)

Query  417  MSKYLRDVVARNMTTFRVVGPDETESNKLAEIYKAGKKVWMAEYFKEDEDGGNLDMHGRV  476
            + K+LRDV+  N   FR+ GPDET SN+L  +++  K+ W A      ED  +L   GRV
Sbjct  2    LGKFLRDVIKLNPDNFRIFGPDETASNRLDAVFEVTKRQWQAPI--LPEDDEHLAPDGRV  59

Query  477  MEILSEHTCEGWLEGYVLSGRHGMLNSYEPFIHVIDSMVNQHCKWLEKCLTVEWRAKVSS  536
            +E+LSEHTC+GWLEGY+L+GRHG+  SYE F H++DSM+NQH KWL+    + WRA V+S
Sbjct  60   IEVLSEHTCQGWLEGYLLTGRHGLFASYEAFAHIVDSMLNQHAKWLKMARELPWRAPVAS  119

Query  537  LNILLTATVWRQDHNGFTHQDPGFLDVVANKSPEIVRIYLPPDGNTLLSTMDHCFRS  593
            LN LLT+TVWRQDHNGF+HQDPGF+D V NK P++VR+YLPPD NTLLS MDHC RS
Sbjct  120  LNYLLTSTVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVYLPPDANTLLSVMDHCLRS  176



Lambda      K        H        a         alpha
   0.319    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1044799136


Query= TCONS_00026233

Length=812
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401348 pfam09364, XFP_N, XFP N-terminal domain. Bacterial enz...  605     0.0   
CDD:462772 pfam09363, XFP_C, XFP C-terminal domain. Bacterial enz...  386     6e-131
CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-ph...  334     2e-111


>CDD:401348 pfam09364, XFP_N, XFP N-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This 
family is distantly related to transketolases e.g. pfam02779.
Length=364

 Score = 605 bits (1562),  Expect = 0.0, Method: Composition-based stats.
 Identities = 219/364 (60%), Positives = 280/364 (77%), Gaps = 0/364 (0%)

Query  24   PLSQDELRKMDAYFRASMYLCLGLLYLRENPLLKEPLKVEHLKARLLGHWGSDAGQSFTW  83
             +S++ L+KMD Y+RA+ YL  G++YLR+NPLL EPLK E LK RL+GHWG+  G +F +
Sbjct  1    KISEEYLKKMDKYWRAANYLSAGMIYLRDNPLLGEPLKPEDLKHRLVGHWGTTPGLNFLY  60

Query  84   IHMNRLIKKYDLDVLFISGPGHGAPGILSQSYLEGVYTEVYPDKTQNEKGMQRFFKQFSF  143
             H+NRLI KYD ++L++ GPGHG P ++S SYL+G YTE YP+ T++E+G++R FKQFSF
Sbjct  61   AHLNRLINKYDQNMLYMVGPGHGGPAMVSPSYLDGSYTEFYPEITKDEEGLKRLFKQFSF  120

Query  144  PGGIGSHATPETPGSIHEGGELGYSISHAFGTVFDHPNLITLTIVGDGEAETGPLATSWH  203
            PGGI SH TPETPGSIHEGGELGY++SHA+G V D+P+LI   +VGDGEAETGPLATSWH
Sbjct  121  PGGIPSHMTPETPGSIHEGGELGYALSHAYGAVLDNPDLIVPCVVGDGEAETGPLATSWH  180

Query  204  SNKFLNPITDGAVLPVLHLNGYKINNPTILARISHEELEMLLRGYGWAPYFVEGSDRESM  263
            SNKF+NP TDGAVLP+LHLNGYKI+NPTILARIS EEL     G G+ PYFVE  D  SM
Sbjct  181  SNKFINPRTDGAVLPILHLNGYKISNPTILARISDEELHKFFEGMGYHPYFVENEDPMSM  240

Query  264  HQAMAATLEHCVLEIKKIQKQARESNKAFRPLWPMIVLRSPKGWSAPREIDGKYLEGFWR  323
            H+ MA T +  V EI  IQK AR ++   RP WPM++LR+PKGW+ P+ +DGK  EG +R
Sbjct  241  HRLMAETFDTAVEEIHDIQKAARTNDMTERPRWPMVILRTPKGWTGPKYVDGKKTEGSFR  300

Query  324  AHQIPITDVQSKPEHLKALENWMKAYKPEEVFDKNGTLIPELKELAPTGSSRMSANPVGN  383
            AHQ+P+   +    HL+ L+ WM++YKPEE+FD++G+L  EL   AP G  RM +NP  N
Sbjct  301  AHQVPLALARDNTAHLEQLKGWMESYKPEELFDEDGSLKEELTAFAPKGEKRMGSNPNAN  360

Query  384  GGLL  387
            GG+L
Sbjct  361  GGVL  364


>CDD:462772 pfam09363, XFP_C, XFP C-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Length=200

 Score = 386 bits (994),  Expect = 6e-131, Method: Composition-based stats.
 Identities = 117/200 (59%), Positives = 146/200 (73%), Gaps = 0/200 (0%)

Query  604  KQEHVQFLNMEEAIEHCTKGVGIWDWASNDQGSEPDVVMVSCGDVSTHEALAATALLREH  663
            KQ H Q+L+M+EAIEHCT G GIWDWAS D G EPDVV+   GD  T E LAA ALLREH
Sbjct  1    KQPHPQWLSMDEAIEHCTAGAGIWDWASTDDGEEPDVVLACAGDEPTLETLAAAALLREH  60

Query  664  LPKLKIRFVNVVDLFRLISDTNHPHGMPDRQWGAIFTTDKPIIFNFHSYPWLVHRLTYKR  723
             P LK+R VNVVDL +L   + HPHG+ D ++ A+FTTDKP+IFNFH YPWL+HRLTY+R
Sbjct  61   FPDLKVRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTTDKPVIFNFHGYPWLIHRLTYRR  120

Query  724  PGQHNLHVRGYKEKGNIDTPFELAVRNQTDRYSLAIDAIDRIPSLGNTASGVREHLINLQ  783
            P   NLHVRGYKE+G   TPF++AV N+ DR+ LAIDAIDR+P LG  A+ +R+ + +  
Sbjct  121  PNHDNLHVRGYKEEGTTTTPFDMAVLNELDRFHLAIDAIDRVPRLGAKAAELRQEMDDKL  180

Query  784  LAAKNKAFDDGIDPDYIRNW  803
            +  +    + G DP  IR+W
Sbjct  181  IEHRQYIREHGEDPPEIRDW  200


>CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-phosphate 
phosphoketolase.  Bacterial enzyme splits fructose-6-P and/or 
xylulose-5-P with the aid of inorganic phosphate into either 
acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P 
EC:4.1.2.9, EC:4.1.2.22. This family is distantly related 
to transketolases e.g. pfam02779.
Length=176

 Score = 334 bits (860),  Expect = 2e-111, Method: Composition-based stats.
 Identities = 106/177 (60%), Positives = 134/177 (76%), Gaps = 2/177 (1%)

Query  417  MSKYLRDVVARNMTTFRVVGPDETESNKLAEIYKAGKKVWMAEYFKEDEDGGNLDMHGRV  476
            + K+LRDV+  N   FR+ GPDET SN+L  +++  K+ W A      ED  +L   GRV
Sbjct  2    LGKFLRDVIKLNPDNFRIFGPDETASNRLDAVFEVTKRQWQAPI--LPEDDEHLAPDGRV  59

Query  477  MEILSEHTCEGWLEGYVLSGRHGMLNSYEPFIHVIDSMVNQHCKWLEKCLTVEWRAKVSS  536
            +E+LSEHTC+GWLEGY+L+GRHG+  SYE F H++DSM+NQH KWL+    + WRA V+S
Sbjct  60   IEVLSEHTCQGWLEGYLLTGRHGLFASYEAFAHIVDSMLNQHAKWLKMARELPWRAPVAS  119

Query  537  LNILLTATVWRQDHNGFTHQDPGFLDVVANKSPEIVRIYLPPDGNTLLSTMDHCFRS  593
            LN LLT+TVWRQDHNGF+HQDPGF+D V NK P++VR+YLPPD NTLLS MDHC RS
Sbjct  120  LNYLLTSTVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVYLPPDANTLLSVMDHCLRS  176



Lambda      K        H        a         alpha
   0.319    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1044799136


Query= TCONS_00026232

Length=812
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401348 pfam09364, XFP_N, XFP N-terminal domain. Bacterial enz...  605     0.0   
CDD:462772 pfam09363, XFP_C, XFP C-terminal domain. Bacterial enz...  386     6e-131
CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-ph...  334     2e-111


>CDD:401348 pfam09364, XFP_N, XFP N-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This 
family is distantly related to transketolases e.g. pfam02779.
Length=364

 Score = 605 bits (1562),  Expect = 0.0, Method: Composition-based stats.
 Identities = 219/364 (60%), Positives = 280/364 (77%), Gaps = 0/364 (0%)

Query  24   PLSQDELRKMDAYFRASMYLCLGLLYLRENPLLKEPLKVEHLKARLLGHWGSDAGQSFTW  83
             +S++ L+KMD Y+RA+ YL  G++YLR+NPLL EPLK E LK RL+GHWG+  G +F +
Sbjct  1    KISEEYLKKMDKYWRAANYLSAGMIYLRDNPLLGEPLKPEDLKHRLVGHWGTTPGLNFLY  60

Query  84   IHMNRLIKKYDLDVLFISGPGHGAPGILSQSYLEGVYTEVYPDKTQNEKGMQRFFKQFSF  143
             H+NRLI KYD ++L++ GPGHG P ++S SYL+G YTE YP+ T++E+G++R FKQFSF
Sbjct  61   AHLNRLINKYDQNMLYMVGPGHGGPAMVSPSYLDGSYTEFYPEITKDEEGLKRLFKQFSF  120

Query  144  PGGIGSHATPETPGSIHEGGELGYSISHAFGTVFDHPNLITLTIVGDGEAETGPLATSWH  203
            PGGI SH TPETPGSIHEGGELGY++SHA+G V D+P+LI   +VGDGEAETGPLATSWH
Sbjct  121  PGGIPSHMTPETPGSIHEGGELGYALSHAYGAVLDNPDLIVPCVVGDGEAETGPLATSWH  180

Query  204  SNKFLNPITDGAVLPVLHLNGYKINNPTILARISHEELEMLLRGYGWAPYFVEGSDRESM  263
            SNKF+NP TDGAVLP+LHLNGYKI+NPTILARIS EEL     G G+ PYFVE  D  SM
Sbjct  181  SNKFINPRTDGAVLPILHLNGYKISNPTILARISDEELHKFFEGMGYHPYFVENEDPMSM  240

Query  264  HQAMAATLEHCVLEIKKIQKQARESNKAFRPLWPMIVLRSPKGWSAPREIDGKYLEGFWR  323
            H+ MA T +  V EI  IQK AR ++   RP WPM++LR+PKGW+ P+ +DGK  EG +R
Sbjct  241  HRLMAETFDTAVEEIHDIQKAARTNDMTERPRWPMVILRTPKGWTGPKYVDGKKTEGSFR  300

Query  324  AHQIPITDVQSKPEHLKALENWMKAYKPEEVFDKNGTLIPELKELAPTGSSRMSANPVGN  383
            AHQ+P+   +    HL+ L+ WM++YKPEE+FD++G+L  EL   AP G  RM +NP  N
Sbjct  301  AHQVPLALARDNTAHLEQLKGWMESYKPEELFDEDGSLKEELTAFAPKGEKRMGSNPNAN  360

Query  384  GGLL  387
            GG+L
Sbjct  361  GGVL  364


>CDD:462772 pfam09363, XFP_C, XFP C-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Length=200

 Score = 386 bits (994),  Expect = 6e-131, Method: Composition-based stats.
 Identities = 117/200 (59%), Positives = 146/200 (73%), Gaps = 0/200 (0%)

Query  604  KQEHVQFLNMEEAIEHCTKGVGIWDWASNDQGSEPDVVMVSCGDVSTHEALAATALLREH  663
            KQ H Q+L+M+EAIEHCT G GIWDWAS D G EPDVV+   GD  T E LAA ALLREH
Sbjct  1    KQPHPQWLSMDEAIEHCTAGAGIWDWASTDDGEEPDVVLACAGDEPTLETLAAAALLREH  60

Query  664  LPKLKIRFVNVVDLFRLISDTNHPHGMPDRQWGAIFTTDKPIIFNFHSYPWLVHRLTYKR  723
             P LK+R VNVVDL +L   + HPHG+ D ++ A+FTTDKP+IFNFH YPWL+HRLTY+R
Sbjct  61   FPDLKVRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTTDKPVIFNFHGYPWLIHRLTYRR  120

Query  724  PGQHNLHVRGYKEKGNIDTPFELAVRNQTDRYSLAIDAIDRIPSLGNTASGVREHLINLQ  783
            P   NLHVRGYKE+G   TPF++AV N+ DR+ LAIDAIDR+P LG  A+ +R+ + +  
Sbjct  121  PNHDNLHVRGYKEEGTTTTPFDMAVLNELDRFHLAIDAIDRVPRLGAKAAELRQEMDDKL  180

Query  784  LAAKNKAFDDGIDPDYIRNW  803
            +  +    + G DP  IR+W
Sbjct  181  IEHRQYIREHGEDPPEIRDW  200


>CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-phosphate 
phosphoketolase.  Bacterial enzyme splits fructose-6-P and/or 
xylulose-5-P with the aid of inorganic phosphate into either 
acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P 
EC:4.1.2.9, EC:4.1.2.22. This family is distantly related 
to transketolases e.g. pfam02779.
Length=176

 Score = 334 bits (860),  Expect = 2e-111, Method: Composition-based stats.
 Identities = 106/177 (60%), Positives = 134/177 (76%), Gaps = 2/177 (1%)

Query  417  MSKYLRDVVARNMTTFRVVGPDETESNKLAEIYKAGKKVWMAEYFKEDEDGGNLDMHGRV  476
            + K+LRDV+  N   FR+ GPDET SN+L  +++  K+ W A      ED  +L   GRV
Sbjct  2    LGKFLRDVIKLNPDNFRIFGPDETASNRLDAVFEVTKRQWQAPI--LPEDDEHLAPDGRV  59

Query  477  MEILSEHTCEGWLEGYVLSGRHGMLNSYEPFIHVIDSMVNQHCKWLEKCLTVEWRAKVSS  536
            +E+LSEHTC+GWLEGY+L+GRHG+  SYE F H++DSM+NQH KWL+    + WRA V+S
Sbjct  60   IEVLSEHTCQGWLEGYLLTGRHGLFASYEAFAHIVDSMLNQHAKWLKMARELPWRAPVAS  119

Query  537  LNILLTATVWRQDHNGFTHQDPGFLDVVANKSPEIVRIYLPPDGNTLLSTMDHCFRS  593
            LN LLT+TVWRQDHNGF+HQDPGF+D V NK P++VR+YLPPD NTLLS MDHC RS
Sbjct  120  LNYLLTSTVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVYLPPDANTLLSVMDHCLRS  176



Lambda      K        H        a         alpha
   0.319    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1044799136


Query= TCONS_00026234

Length=812
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401348 pfam09364, XFP_N, XFP N-terminal domain. Bacterial enz...  605     0.0   
CDD:462772 pfam09363, XFP_C, XFP C-terminal domain. Bacterial enz...  386     6e-131
CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-ph...  334     2e-111


>CDD:401348 pfam09364, XFP_N, XFP N-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This 
family is distantly related to transketolases e.g. pfam02779.
Length=364

 Score = 605 bits (1562),  Expect = 0.0, Method: Composition-based stats.
 Identities = 219/364 (60%), Positives = 280/364 (77%), Gaps = 0/364 (0%)

Query  24   PLSQDELRKMDAYFRASMYLCLGLLYLRENPLLKEPLKVEHLKARLLGHWGSDAGQSFTW  83
             +S++ L+KMD Y+RA+ YL  G++YLR+NPLL EPLK E LK RL+GHWG+  G +F +
Sbjct  1    KISEEYLKKMDKYWRAANYLSAGMIYLRDNPLLGEPLKPEDLKHRLVGHWGTTPGLNFLY  60

Query  84   IHMNRLIKKYDLDVLFISGPGHGAPGILSQSYLEGVYTEVYPDKTQNEKGMQRFFKQFSF  143
             H+NRLI KYD ++L++ GPGHG P ++S SYL+G YTE YP+ T++E+G++R FKQFSF
Sbjct  61   AHLNRLINKYDQNMLYMVGPGHGGPAMVSPSYLDGSYTEFYPEITKDEEGLKRLFKQFSF  120

Query  144  PGGIGSHATPETPGSIHEGGELGYSISHAFGTVFDHPNLITLTIVGDGEAETGPLATSWH  203
            PGGI SH TPETPGSIHEGGELGY++SHA+G V D+P+LI   +VGDGEAETGPLATSWH
Sbjct  121  PGGIPSHMTPETPGSIHEGGELGYALSHAYGAVLDNPDLIVPCVVGDGEAETGPLATSWH  180

Query  204  SNKFLNPITDGAVLPVLHLNGYKINNPTILARISHEELEMLLRGYGWAPYFVEGSDRESM  263
            SNKF+NP TDGAVLP+LHLNGYKI+NPTILARIS EEL     G G+ PYFVE  D  SM
Sbjct  181  SNKFINPRTDGAVLPILHLNGYKISNPTILARISDEELHKFFEGMGYHPYFVENEDPMSM  240

Query  264  HQAMAATLEHCVLEIKKIQKQARESNKAFRPLWPMIVLRSPKGWSAPREIDGKYLEGFWR  323
            H+ MA T +  V EI  IQK AR ++   RP WPM++LR+PKGW+ P+ +DGK  EG +R
Sbjct  241  HRLMAETFDTAVEEIHDIQKAARTNDMTERPRWPMVILRTPKGWTGPKYVDGKKTEGSFR  300

Query  324  AHQIPITDVQSKPEHLKALENWMKAYKPEEVFDKNGTLIPELKELAPTGSSRMSANPVGN  383
            AHQ+P+   +    HL+ L+ WM++YKPEE+FD++G+L  EL   AP G  RM +NP  N
Sbjct  301  AHQVPLALARDNTAHLEQLKGWMESYKPEELFDEDGSLKEELTAFAPKGEKRMGSNPNAN  360

Query  384  GGLL  387
            GG+L
Sbjct  361  GGVL  364


>CDD:462772 pfam09363, XFP_C, XFP C-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Length=200

 Score = 386 bits (994),  Expect = 6e-131, Method: Composition-based stats.
 Identities = 117/200 (59%), Positives = 146/200 (73%), Gaps = 0/200 (0%)

Query  604  KQEHVQFLNMEEAIEHCTKGVGIWDWASNDQGSEPDVVMVSCGDVSTHEALAATALLREH  663
            KQ H Q+L+M+EAIEHCT G GIWDWAS D G EPDVV+   GD  T E LAA ALLREH
Sbjct  1    KQPHPQWLSMDEAIEHCTAGAGIWDWASTDDGEEPDVVLACAGDEPTLETLAAAALLREH  60

Query  664  LPKLKIRFVNVVDLFRLISDTNHPHGMPDRQWGAIFTTDKPIIFNFHSYPWLVHRLTYKR  723
             P LK+R VNVVDL +L   + HPHG+ D ++ A+FTTDKP+IFNFH YPWL+HRLTY+R
Sbjct  61   FPDLKVRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTTDKPVIFNFHGYPWLIHRLTYRR  120

Query  724  PGQHNLHVRGYKEKGNIDTPFELAVRNQTDRYSLAIDAIDRIPSLGNTASGVREHLINLQ  783
            P   NLHVRGYKE+G   TPF++AV N+ DR+ LAIDAIDR+P LG  A+ +R+ + +  
Sbjct  121  PNHDNLHVRGYKEEGTTTTPFDMAVLNELDRFHLAIDAIDRVPRLGAKAAELRQEMDDKL  180

Query  784  LAAKNKAFDDGIDPDYIRNW  803
            +  +    + G DP  IR+W
Sbjct  181  IEHRQYIREHGEDPPEIRDW  200


>CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-phosphate 
phosphoketolase.  Bacterial enzyme splits fructose-6-P and/or 
xylulose-5-P with the aid of inorganic phosphate into either 
acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P 
EC:4.1.2.9, EC:4.1.2.22. This family is distantly related 
to transketolases e.g. pfam02779.
Length=176

 Score = 334 bits (860),  Expect = 2e-111, Method: Composition-based stats.
 Identities = 106/177 (60%), Positives = 134/177 (76%), Gaps = 2/177 (1%)

Query  417  MSKYLRDVVARNMTTFRVVGPDETESNKLAEIYKAGKKVWMAEYFKEDEDGGNLDMHGRV  476
            + K+LRDV+  N   FR+ GPDET SN+L  +++  K+ W A      ED  +L   GRV
Sbjct  2    LGKFLRDVIKLNPDNFRIFGPDETASNRLDAVFEVTKRQWQAPI--LPEDDEHLAPDGRV  59

Query  477  MEILSEHTCEGWLEGYVLSGRHGMLNSYEPFIHVIDSMVNQHCKWLEKCLTVEWRAKVSS  536
            +E+LSEHTC+GWLEGY+L+GRHG+  SYE F H++DSM+NQH KWL+    + WRA V+S
Sbjct  60   IEVLSEHTCQGWLEGYLLTGRHGLFASYEAFAHIVDSMLNQHAKWLKMARELPWRAPVAS  119

Query  537  LNILLTATVWRQDHNGFTHQDPGFLDVVANKSPEIVRIYLPPDGNTLLSTMDHCFRS  593
            LN LLT+TVWRQDHNGF+HQDPGF+D V NK P++VR+YLPPD NTLLS MDHC RS
Sbjct  120  LNYLLTSTVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVYLPPDANTLLSVMDHCLRS  176



Lambda      K        H        a         alpha
   0.319    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 1044799136


Query= TCONS_00026235

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00026236

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00026237

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00026238

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00020746

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395860 pfam01083, Cutinase, Cutinase                              199     9e-65
CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain          57.0    7e-12


>CDD:395860 pfam01083, Cutinase, Cutinase.  
Length=173

 Score = 199 bits (507),  Expect = 9e-65, Method: Composition-based stats.
 Identities = 88/209 (42%), Positives = 108/209 (52%), Gaps = 39/209 (19%)

Query  27   SCPNIHVFGARETTAPTGYGSSSTAVNLILNAYPGSTSEAI---NYPACGGQSSCGGVSY  83
            SCP++HV  AR TT P G GS   AV   L + PGSTS A+   NYPA  GQ       Y
Sbjct  1    SCPDVHVIFARGTTEPGGLGSVGPAVVSALESAPGSTSVAVQGVNYPADLGQL------Y  54

Query  84   ANSVVAGINAVVSAVNSFNQRCPNTQLVLVGYSQGGQIMDNALCGGGDPNQGYTNTAVPL  143
            A S  AG NA  + +NS N +CP+T++VL GYSQG Q+MDNA+CG              L
Sbjct  55   AGSASAGANAAAALINSANSKCPDTKIVLGGYSQGAQVMDNAICG--------------L  100

Query  144  SSSAVNMIKAAIFMGDPRYVAGLPYNVGTCKAGGFDPRPPGFSCPSASKIQSYCDAADPY  203
             ++  + + A +  GDP    GLP                G S   ASK  SYCDA DP 
Sbjct  101  PAAVADKVAAVVLFGDPSNGQGLP----------------GISPLPASKTISYCDAGDPI  144

Query  204  CCNGNDANTHQGYGTEYGQAALTFVKSKL  232
            C  GN+   H  YG++Y   A  FV SKL
Sbjct  145  CGTGNNLPAHLSYGSDYTTQAAAFVVSKL  173


>CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain.  
Length=29

 Score = 57.0 bits (139),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 20/29 (69%), Gaps = 0/29 (0%)

Query  260  HYGQCGGQGWTGATSCQSPYTCTVISQWY  288
             +GQCGG GWTG T+C S YTC   + +Y
Sbjct  1    LWGQCGGIGWTGPTTCASGYTCVYQNDYY  29



Lambda      K        H        a         alpha
   0.313    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00020747

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395860 pfam01083, Cutinase, Cutinase                              94.7    1e-25
CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain          53.9    2e-11


>CDD:395860 pfam01083, Cutinase, Cutinase.  
Length=173

 Score = 94.7 bits (236),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 39/111 (35%), Positives = 48/111 (43%), Gaps = 30/111 (27%)

Query  1    MDNALCGGGDPNQGYTNTAVPLSSSAVNMIKAAIFMGDPRYVAGLPYNVGTCKAGGFDPR  60
            MDNA+CG              L ++  + + A +  GDP    GLP              
Sbjct  93   MDNAICG--------------LPAAVADKVAAVVLFGDPSNGQGLP--------------  124

Query  61   PPGFSCPSASKIQSYCDAADPYCCNGNDANTHQGYGTEYGQAALTFVKSKL  111
              G S   ASK  SYCDA DP C  GN+   H  YG++Y   A  FV SKL
Sbjct  125  --GISPLPASKTISYCDAGDPICGTGNNLPAHLSYGSDYTTQAAAFVVSKL  173


>CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain.  
Length=29

 Score = 53.9 bits (131),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 20/29 (69%), Gaps = 0/29 (0%)

Query  139  HYGQCGGQGWTGATSCQSPYTCTVISQWY  167
             +GQCGG GWTG T+C S YTC   + +Y
Sbjct  1    LWGQCGGIGWTGPTTCASGYTCVYQNDYY  29



Lambda      K        H        a         alpha
   0.313    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00020748

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395860 pfam01083, Cutinase, Cutinase                              199     9e-65
CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain          57.0    7e-12


>CDD:395860 pfam01083, Cutinase, Cutinase.  
Length=173

 Score = 199 bits (507),  Expect = 9e-65, Method: Composition-based stats.
 Identities = 88/209 (42%), Positives = 108/209 (52%), Gaps = 39/209 (19%)

Query  27   SCPNIHVFGARETTAPTGYGSSSTAVNLILNAYPGSTSEAI---NYPACGGQSSCGGVSY  83
            SCP++HV  AR TT P G GS   AV   L + PGSTS A+   NYPA  GQ       Y
Sbjct  1    SCPDVHVIFARGTTEPGGLGSVGPAVVSALESAPGSTSVAVQGVNYPADLGQL------Y  54

Query  84   ANSVVAGINAVVSAVNSFNQRCPNTQLVLVGYSQGGQIMDNALCGGGDPNQGYTNTAVPL  143
            A S  AG NA  + +NS N +CP+T++VL GYSQG Q+MDNA+CG              L
Sbjct  55   AGSASAGANAAAALINSANSKCPDTKIVLGGYSQGAQVMDNAICG--------------L  100

Query  144  SSSAVNMIKAAIFMGDPRYVAGLPYNVGTCKAGGFDPRPPGFSCPSASKIQSYCDAADPY  203
             ++  + + A +  GDP    GLP                G S   ASK  SYCDA DP 
Sbjct  101  PAAVADKVAAVVLFGDPSNGQGLP----------------GISPLPASKTISYCDAGDPI  144

Query  204  CCNGNDANTHQGYGTEYGQAALTFVKSKL  232
            C  GN+   H  YG++Y   A  FV SKL
Sbjct  145  CGTGNNLPAHLSYGSDYTTQAAAFVVSKL  173


>CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain.  
Length=29

 Score = 57.0 bits (139),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 20/29 (69%), Gaps = 0/29 (0%)

Query  260  HYGQCGGQGWTGATSCQSPYTCTVISQWY  288
             +GQCGG GWTG T+C S YTC   + +Y
Sbjct  1    LWGQCGGIGWTGPTTCASGYTCVYQNDYY  29



Lambda      K        H        a         alpha
   0.313    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00020749

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395860 pfam01083, Cutinase, Cutinase                              137     3e-42


>CDD:395860 pfam01083, Cutinase, Cutinase.  
Length=173

 Score = 137 bits (348),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 63/144 (44%), Positives = 80/144 (56%), Gaps = 23/144 (16%)

Query  27   SCPNIHVFGARETTAPTGYGSSSTAVNLILNAYPGSTSEAI---NYPACGGQSSCGGVSY  83
            SCP++HV  AR TT P G GS   AV   L + PGSTS A+   NYPA  GQ       Y
Sbjct  1    SCPDVHVIFARGTTEPGGLGSVGPAVVSALESAPGSTSVAVQGVNYPADLGQL------Y  54

Query  84   ANSVVAGINAVVSAVNSFNQRCPNTQLVLVGYSQGGQIMDNALCGGGDPNQGYTNTAVPL  143
            A S  AG NA  + +NS N +CP+T++VL GYSQG Q+MDNA+CG              L
Sbjct  55   AGSASAGANAAAALINSANSKCPDTKIVLGGYSQGAQVMDNAICG--------------L  100

Query  144  SSSAVNMIKAAIFMGDPRYVAGLP  167
             ++  + + A +  GDP    GLP
Sbjct  101  PAAVADKVAAVVLFGDPSNGQGLP  124



Lambda      K        H        a         alpha
   0.315    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00026239

Length=123
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395860 pfam01083, Cutinase, Cutinase                              101     6e-29


>CDD:395860 pfam01083, Cutinase, Cutinase.  
Length=173

 Score = 101 bits (253),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 47/94 (50%), Positives = 57/94 (61%), Gaps = 9/94 (10%)

Query  27   SCPNIHVFGARETTAPTGYGSSSTAVNLILNAYPGSTSEAI---NYPACGGQSSCGGVSY  83
            SCP++HV  AR TT P G GS   AV   L + PGSTS A+   NYPA  GQ       Y
Sbjct  1    SCPDVHVIFARGTTEPGGLGSVGPAVVSALESAPGSTSVAVQGVNYPADLGQL------Y  54

Query  84   ANSVVAGINAVVSAVNSFNQRCPNTQLVLVGYSQ  117
            A S  AG NA  + +NS N +CP+T++VL GYSQ
Sbjct  55   AGSASAGANAAAALINSANSKCPDTKIVLGGYSQ  88



Lambda      K        H        a         alpha
   0.314    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00026240

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395860 pfam01083, Cutinase, Cutinase                              199     9e-65
CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain          57.0    7e-12


>CDD:395860 pfam01083, Cutinase, Cutinase.  
Length=173

 Score = 199 bits (507),  Expect = 9e-65, Method: Composition-based stats.
 Identities = 88/209 (42%), Positives = 108/209 (52%), Gaps = 39/209 (19%)

Query  27   SCPNIHVFGARETTAPTGYGSSSTAVNLILNAYPGSTSEAI---NYPACGGQSSCGGVSY  83
            SCP++HV  AR TT P G GS   AV   L + PGSTS A+   NYPA  GQ       Y
Sbjct  1    SCPDVHVIFARGTTEPGGLGSVGPAVVSALESAPGSTSVAVQGVNYPADLGQL------Y  54

Query  84   ANSVVAGINAVVSAVNSFNQRCPNTQLVLVGYSQGGQIMDNALCGGGDPNQGYTNTAVPL  143
            A S  AG NA  + +NS N +CP+T++VL GYSQG Q+MDNA+CG              L
Sbjct  55   AGSASAGANAAAALINSANSKCPDTKIVLGGYSQGAQVMDNAICG--------------L  100

Query  144  SSSAVNMIKAAIFMGDPRYVAGLPYNVGTCKAGGFDPRPPGFSCPSASKIQSYCDAADPY  203
             ++  + + A +  GDP    GLP                G S   ASK  SYCDA DP 
Sbjct  101  PAAVADKVAAVVLFGDPSNGQGLP----------------GISPLPASKTISYCDAGDPI  144

Query  204  CCNGNDANTHQGYGTEYGQAALTFVKSKL  232
            C  GN+   H  YG++Y   A  FV SKL
Sbjct  145  CGTGNNLPAHLSYGSDYTTQAAAFVVSKL  173


>CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain.  
Length=29

 Score = 57.0 bits (139),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 20/29 (69%), Gaps = 0/29 (0%)

Query  260  HYGQCGGQGWTGATSCQSPYTCTVISQWY  288
             +GQCGG GWTG T+C S YTC   + +Y
Sbjct  1    LWGQCGGIGWTGPTTCASGYTCVYQNDYY  29



Lambda      K        H        a         alpha
   0.313    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00020750

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         307     7e-100
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            65.1    6e-12 


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 307 bits (789),  Expect = 7e-100, Method: Composition-based stats.
 Identities = 158/474 (33%), Positives = 253/474 (53%), Gaps = 34/474 (7%)

Query  61   AAFLASMGGFSMGYDMGVISIINSMDKFHAAY-------PRAESAFGKGFMTGMLLLGAF  113
             A +A++GGF  GYD GVI    ++  F   +         A  +   G +  +  +G F
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  114  VGCIFMPYLADRISRKWALTAMVIVFNFGAILQTAAT---NYDMLVAGRFIGGIGVGTLA  170
            +G +F   L DR  RK +L    ++F  GA+LQ AA    +   L+ GR + GIGVG  +
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  171  MGAPLYISEVSPPHMRGTLLVLESISITLGVVVAFYITYGTRHMATEACFRLPFGLQMVT  230
            + AP+YISE++P  +RG L  L  ++IT G+++A+    G    +    +R+P GLQ+V 
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVP  180

Query  231  ATILGAGIHFFPYSPRWLALVNRQDDCMSSLCKLRGLTSSDERVQLEYQQIIAEINFQRA  290
            A +L  G+ F P SPRWL    R ++    L KLRG+   D  +     +I   +  +  
Sbjct  181  ALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDREL----DEIKDSL--EAG  234

Query  291  VLAKKHPGASGTKLEVLSWMNLFTRKLWK-RTAVGVGVAFFQQFSGINAFIYYAPTLFES  349
              A+K            SW  LF+ K  + R  +GV +  FQQ +GINA  YY+ T+FE+
Sbjct  235  QEAEKA-----------SWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFEN  283

Query  350  LGQTAETSLILSGVFNVLQLIAAIVCFLVIEKVGRRPLAIFGGFGTAVAYIIIAVLSGLY  409
            LG +   S +++ +  V+  +   +   ++++ GRRPL + G  G A+ ++I+ +++ L 
Sbjct  284  LGLS--DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLG  341

Query  410  STSWASHSAAGWGCVAMAFIFILIYGVTYSPLGWALPSEVFSTTSRSKGVALATCTIWLS  469
                +    AG   +    +FI  + + + P+ W + SE+F  + RSK +ALAT   WL+
Sbjct  342  V---SKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLA  398

Query  470  DFIVGVVTPSMLADIG-YRTYIFFAVMCSLAGIWAFFLVPETGGKSLEEIDELF  522
            +F++G + P +   IG   T+  FA +  L  I+ FF VPET G++LEEIDELF
Sbjct  399  NFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 65.1 bits (159),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 67/376 (18%), Positives = 129/376 (34%), Gaps = 63/376 (17%)

Query  97   SAFGKGFMTGMLLLGAFVGCIFMPYLADRISRKWALTAMVIVFNFGAILQTAATNYDMLV  156
            S    G +  +  LG  +       L+DR  R+  L   +++F  G +L   A++  +L+
Sbjct  30   SPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLL  89

Query  157  AGRFIGGIGVGTLAMGAPLYISEVSPPHMRGTLLVLESISITLGVVVAFYITYGTRHMAT  216
              R + G+G G L   A   I++  PP  RG  L L S    LG  +   +      +A+
Sbjct  90   VLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGL---LAS  146

Query  217  EACFRLPFGLQMVTATILGAGIHFFPYSPRWLALVNRQDDCMSSLCKLRGLTSSDERVQL  276
               +R  F + +   ++L A +   P  P                               
Sbjct  147  LFGWRAAFLI-LAILSLLAAVLLLLPRPPP------------------------------  175

Query  277  EYQQIIAEINFQRAVLAKKHPGASGTKLEVLSWMNLFTRKLWKRTAVGVGVAFFQQFSGI  336
                              +       +   LS +  + + L +   + + +A        
Sbjct  176  ------------------ESKRPKPAEEARLSLIVAW-KALLRDPVLWLLLALLLFGFAF  216

Query  337  NAFIYYAPTLFESLGQTAETSLILSGVFNVLQLIAAIVCFLVIEKVGRRPLAIFGGFGTA  396
               + Y P   E LG +A  + +L G+  +L  I  ++   + +++GRR   +       
Sbjct  217  FGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLI  276

Query  397  VAYIIIAVLSGLYSTSWASHSAAGWGCVAMAFIFILIYGVTYSPLGWALPSEVFSTTSRS  456
            +A + + +LS   S+ W          +    +    +G+ +  L  AL S++     R 
Sbjct  277  LAALGLLLLSLTLSSLWL---------LLALLLLGFGFGLVFPAL-NALVSDLAPKEERG  326

Query  457  KGVALATCTIWLSDFI  472
                L      L   +
Sbjct  327  TASGLYNTAGSLGGAL  342



Lambda      K        H        a         alpha
   0.325    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00020752

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00020751

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00026241

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00020754

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00020753

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00026243

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00026242

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00020756

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00020755

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00020760

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00026245

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00026244

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00026247

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00026246

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding                 64.9    6e-13


>CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding.  
Length=183

 Score = 64.9 bits (159),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 44/134 (33%), Positives = 54/134 (40%), Gaps = 14/134 (10%)

Query  137  RCFRSALQHAGFTVTIITRSESKATFPPDIPVITTTY----TLENLTSALAGQDAAVCVV  192
            R     L   G  VT + R+  K     D P +          ++L  ALAGQDA +  +
Sbjct  8    RLLVKQLLARGHEVTALVRNPEKLADLEDHPGVEVVDGDVLDPDDLAEALAGQDAVISAL  67

Query  193  GPGGIGAQVTM--IDAAEAAGVKRFIL-DDFGWGDN-PNSFPEFNAIHAQRRAGWDHAKA  248
            G GG         IDAA+AAGVKRF+L    G GD  P  F  +N            AK 
Sbjct  68   GGGGTDETGAKNIIDAAKAAGVKRFVLVSSLGVGDEVPGPFGPWN--KEMLGPYLA-AKR  124

Query  249  KAE---SNPNFTYT  259
             AE         YT
Sbjct  125  AAEELLRASGLDYT  138



Lambda      K        H        a         alpha
   0.319    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00020758

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00020759

Length=338


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00020761

Length=339


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00026248

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00020763

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00020764

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00026250

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  97.9    2e-23


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 97.9 bits (244),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 76/319 (24%), Positives = 122/319 (38%), Gaps = 35/319 (11%)

Query  24   YRYRGLVIRSLR---NDINQGHKRAS--DVVLAGIITLLLVDAQQGASPHWRYHMEGLQK  78
             RY+ L +R L+    +++      S  D VLA I+ L   +   G    WR H+EG + 
Sbjct  64   QRYKSLALRLLQRALAELSSRLSSNSKYDDVLAAILLLCSFEISSGDVSDWRVHLEGAKD  123

Query  79   LILLRGGIRSLAR--SARLAPLLHCFVCIAVIGDTVSPTSHLATSRLRLEESYFILENLG  136
            LI LRGG    +   S+ L  LL  F    ++  T   T+    S    E      + L 
Sbjct  124  LIRLRGGPSKTSSGLSSLLRFLLRNFAYHDILSST---TTGRGPSFPSEEYLDLFGDELE  180

Query  137  NGVFDF---QMCPKPLF---AEIIRINHLRVQAWKQSPTRPGPLAQEAYGVLNRINTFSS  190
             G         C   LF   +EI  +   +      +   P      A  +  R++++  
Sbjct  181  LGSSGLDPLMGCSNSLFLLISEISDLAREKRSLRSDNELLPLEFLSRAQELEQRLSSWEP  240

Query  191  ER--WADSKPSSKEDWRIV---GESYQAAVSLYCILSLQSLSVLPLNPSLRASCASCGRL  245
                             ++    E Y+ A  +Y    +  L   P +P ++         
Sbjct  241  RSDDLEIPLDGEDPLSELLLTLTELYRLAALIYLYRRILGLP--PSSPEVQ----ELVSK  294

Query  246  LQDLLNEALSSPRIKRSVLWPLVVLGVLAVNGGAGMRAFVREHLPEMSRH-IGSYVPLMA  304
            L +LL+    SP    S+LWPL + G  AV+     R FV + L  + +  +G+     A
Sbjct  295  LLELLDLLPDSPLAISSLLWPLFIAGCEAVDD--DDRDFVLDRLDSLEKSRLGNVR--RA  350

Query  305  KALLEKFWAS---GETSWD  320
            + +LE+ W     GE S D
Sbjct  351  REILEEVWKRRDDGELSID  369



Lambda      K        H        a         alpha
   0.323    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00026249

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  99.8    9e-24


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 99.8 bits (249),  Expect = 9e-24, Method: Composition-based stats.
 Identities = 80/343 (23%), Positives = 127/343 (37%), Gaps = 37/343 (11%)

Query  58   CMTLSHRMNQMRNDPQSKSLAVTFYRYRGLVIRSLR---NDINQGHKRAS--DVVLAGII  112
             + LS    Q    P          RY+ L +R L+    +++      S  D VLA I+
Sbjct  42   LLALSAFHLQSSGPPDLWEREA--QRYKSLALRLLQRALAELSSRLSSNSKYDDVLAAIL  99

Query  113  TLLLVDAQQGASPHWRYHMEGLQKLILLRGGIRSLAR--SARLAPLLHCFVCIAVIGDTV  170
             L   +   G    WR H+EG + LI LRGG    +   S+ L  LL  F    ++  T 
Sbjct  100  LLCSFEISSGDVSDWRVHLEGAKDLIRLRGGPSKTSSGLSSLLRFLLRNFAYHDILSST-  158

Query  171  SPTSHLATSRLRLEESYFILENLGNGVFDF---QMCPKPLF---AEIIRINHLRVQAWKQ  224
              T+    S    E      + L  G         C   LF   +EI  +   +      
Sbjct  159  --TTGRGPSFPSEEYLDLFGDELELGSSGLDPLMGCSNSLFLLISEISDLAREKRSLRSD  216

Query  225  SPTRPGPLAQEAYGVLNRINTFSSER--WADSKPSSKEDWRIV---GESYQAAVSLYCIL  279
            +   P      A  +  R++++                   ++    E Y+ A  +Y   
Sbjct  217  NELLPLEFLSRAQELEQRLSSWEPRSDDLEIPLDGEDPLSELLLTLTELYRLAALIYLYR  276

Query  280  SLQSLSVLPLNPSLRASCASCGRLLQDLLNEALSSPRIKRSVLWPLVVLGVLAVNGGAGM  339
             +  L   P +P ++         L +LL+    SP    S+LWPL + G  AV+     
Sbjct  277  RILGLP--PSSPEVQ----ELVSKLLELLDLLPDSPLAISSLLWPLFIAGCEAVDD--DD  328

Query  340  RAFVREHLPEMSRH-IGSYVPLMAKALLEKFWAS---GETSWD  378
            R FV + L  + +  +G+     A+ +LE+ W     GE S D
Sbjct  329  RDFVLDRLDSLEKSRLGNVR--RAREILEEVWKRRDDGELSID  369



Lambda      K        H        a         alpha
   0.323    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 481536020


Query= TCONS_00020768

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  99.8    9e-24


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 99.8 bits (249),  Expect = 9e-24, Method: Composition-based stats.
 Identities = 80/343 (23%), Positives = 127/343 (37%), Gaps = 37/343 (11%)

Query  58   CMTLSHRMNQMRNDPQSKSLAVTFYRYRGLVIRSLR---NDINQGHKRAS--DVVLAGII  112
             + LS    Q    P          RY+ L +R L+    +++      S  D VLA I+
Sbjct  42   LLALSAFHLQSSGPPDLWEREA--QRYKSLALRLLQRALAELSSRLSSNSKYDDVLAAIL  99

Query  113  TLLLVDAQQGASPHWRYHMEGLQKLILLRGGIRSLAR--SARLAPLLHCFVCIAVIGDTV  170
             L   +   G    WR H+EG + LI LRGG    +   S+ L  LL  F    ++  T 
Sbjct  100  LLCSFEISSGDVSDWRVHLEGAKDLIRLRGGPSKTSSGLSSLLRFLLRNFAYHDILSST-  158

Query  171  SPTSHLATSRLRLEESYFILENLGNGVFDF---QMCPKPLF---AEIIRINHLRVQAWKQ  224
              T+    S    E      + L  G         C   LF   +EI  +   +      
Sbjct  159  --TTGRGPSFPSEEYLDLFGDELELGSSGLDPLMGCSNSLFLLISEISDLAREKRSLRSD  216

Query  225  SPTRPGPLAQEAYGVLNRINTFSSER--WADSKPSSKEDWRIV---GESYQAAVSLYCIL  279
            +   P      A  +  R++++                   ++    E Y+ A  +Y   
Sbjct  217  NELLPLEFLSRAQELEQRLSSWEPRSDDLEIPLDGEDPLSELLLTLTELYRLAALIYLYR  276

Query  280  SLQSLSVLPLNPSLRASCASCGRLLQDLLNEALSSPRIKRSVLWPLVVLGVLAVNGGAGM  339
             +  L   P +P ++         L +LL+    SP    S+LWPL + G  AV+     
Sbjct  277  RILGLP--PSSPEVQ----ELVSKLLELLDLLPDSPLAISSLLWPLFIAGCEAVDD--DD  328

Query  340  RAFVREHLPEMSRH-IGSYVPLMAKALLEKFWAS---GETSWD  378
            R FV + L  + +  +G+     A+ +LE+ W     GE S D
Sbjct  329  RDFVLDRLDSLEKSRLGNVR--RAREILEEVWKRRDDGELSID  369



Lambda      K        H        a         alpha
   0.323    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 481536020


Query= TCONS_00020767

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  90.9    1e-20


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 90.9 bits (226),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 81/364 (22%), Positives = 129/364 (35%), Gaps = 58/364 (16%)

Query  58   CMTLSHRMNQMRNDPQSKSLAVTFYRYRGLVIRSLR---NDINQGHKRAS--DVVLAGII  112
             + LS    Q    P          RY+ L +R L+    +++      S  D VLA I+
Sbjct  42   LLALSAFHLQSSGPPDLWEREA--QRYKSLALRLLQRALAELSSRLSSNSKYDDVLAAIL  99

Query  113  TLLLVDVSLKCSMRNHPPILNHILLRKAQQGASPHWRYHMEGLQKLILLRGGIRSLAR--  170
             L   ++S                      G    WR H+EG + LI LRGG    +   
Sbjct  100  LLCSFEIS---------------------SGDVSDWRVHLEGAKDLIRLRGGPSKTSSGL  138

Query  171  SARLAPLLHCFVCIAVIGDTVSPTSHLATSRLRLEESYFILENLGNGVFDF---QMCPKP  227
            S+ L  LL  F    ++  T   T+    S    E      + L  G         C   
Sbjct  139  SSLLRFLLRNFAYHDILSST---TTGRGPSFPSEEYLDLFGDELELGSSGLDPLMGCSNS  195

Query  228  LF---AEIIRINHLRVQAWKQSPTRPGPLAQEAYGVLNRINTFSSER--WADSKPSSKED  282
            LF   +EI  +   +      +   P      A  +  R++++                 
Sbjct  196  LFLLISEISDLAREKRSLRSDNELLPLEFLSRAQELEQRLSSWEPRSDDLEIPLDGEDPL  255

Query  283  WRIV---GESYQAAVSLYCILSLQSLSVLPLNPSLRASCASCGRLLQDLLNEALSSPRIK  339
              ++    E Y+ A  +Y    +  L   P +P ++         L +LL+    SP   
Sbjct  256  SELLLTLTELYRLAALIYLYRRILGLP--PSSPEVQ----ELVSKLLELLDLLPDSPLAI  309

Query  340  RSVLWPLVVLGVLAVNGGAGMRAFVREHLPEMSRH-IGSYVPLMAKALLEKFWAS---GE  395
             S+LWPL + G  AV+     R FV + L  + +  +G+     A+ +LE+ W     GE
Sbjct  310  SSLLWPLFIAGCEAVDD--DDRDFVLDRLDSLEKSRLGNVR--RAREILEEVWKRRDDGE  365

Query  396  TSWD  399
             S D
Sbjct  366  LSID  369



Lambda      K        H        a         alpha
   0.323    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00020766

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  97.9    2e-23


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 97.9 bits (244),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 76/319 (24%), Positives = 122/319 (38%), Gaps = 35/319 (11%)

Query  24   YRYRGLVIRSLR---NDINQGHKRAS--DVVLAGIITLLLVDAQQGASPHWRYHMEGLQK  78
             RY+ L +R L+    +++      S  D VLA I+ L   +   G    WR H+EG + 
Sbjct  64   QRYKSLALRLLQRALAELSSRLSSNSKYDDVLAAILLLCSFEISSGDVSDWRVHLEGAKD  123

Query  79   LILLRGGIRSLAR--SARLAPLLHCFVCIAVIGDTVSPTSHLATSRLRLEESYFILENLG  136
            LI LRGG    +   S+ L  LL  F    ++  T   T+    S    E      + L 
Sbjct  124  LIRLRGGPSKTSSGLSSLLRFLLRNFAYHDILSST---TTGRGPSFPSEEYLDLFGDELE  180

Query  137  NGVFDF---QMCPKPLF---AEIIRINHLRVQAWKQSPTRPGPLAQEAYGVLNRINTFSS  190
             G         C   LF   +EI  +   +      +   P      A  +  R++++  
Sbjct  181  LGSSGLDPLMGCSNSLFLLISEISDLAREKRSLRSDNELLPLEFLSRAQELEQRLSSWEP  240

Query  191  ER--WADSKPSSKEDWRIV---GESYQAAVSLYCILSLQSLSVLPLNPSLRASCASCGRL  245
                             ++    E Y+ A  +Y    +  L   P +P ++         
Sbjct  241  RSDDLEIPLDGEDPLSELLLTLTELYRLAALIYLYRRILGLP--PSSPEVQ----ELVSK  294

Query  246  LQDLLNEALSSPRIKRSVLWPLVVLGVLAVNGGAGMRAFVREHLPEMSRH-IGSYVPLMA  304
            L +LL+    SP    S+LWPL + G  AV+     R FV + L  + +  +G+     A
Sbjct  295  LLELLDLLPDSPLAISSLLWPLFIAGCEAVDD--DDRDFVLDRLDSLEKSRLGNVR--RA  350

Query  305  KALLEKFWAS---GETSWD  320
            + +LE+ W     GE S D
Sbjct  351  REILEEVWKRRDDGELSID  369



Lambda      K        H        a         alpha
   0.323    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00020769

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  97.9    2e-23


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 97.9 bits (244),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 76/319 (24%), Positives = 122/319 (38%), Gaps = 35/319 (11%)

Query  24   YRYRGLVIRSLR---NDINQGHKRAS--DVVLAGIITLLLVDAQQGASPHWRYHMEGLQK  78
             RY+ L +R L+    +++      S  D VLA I+ L   +   G    WR H+EG + 
Sbjct  64   QRYKSLALRLLQRALAELSSRLSSNSKYDDVLAAILLLCSFEISSGDVSDWRVHLEGAKD  123

Query  79   LILLRGGIRSLAR--SARLAPLLHCFVCIAVIGDTVSPTSHLATSRLRLEESYFILENLG  136
            LI LRGG    +   S+ L  LL  F    ++  T   T+    S    E      + L 
Sbjct  124  LIRLRGGPSKTSSGLSSLLRFLLRNFAYHDILSST---TTGRGPSFPSEEYLDLFGDELE  180

Query  137  NGVFDF---QMCPKPLF---AEIIRINHLRVQAWKQSPTRPGPLAQEAYGVLNRINTFSS  190
             G         C   LF   +EI  +   +      +   P      A  +  R++++  
Sbjct  181  LGSSGLDPLMGCSNSLFLLISEISDLAREKRSLRSDNELLPLEFLSRAQELEQRLSSWEP  240

Query  191  ER--WADSKPSSKEDWRIV---GESYQAAVSLYCILSLQSLSVLPLNPSLRASCASCGRL  245
                             ++    E Y+ A  +Y    +  L   P +P ++         
Sbjct  241  RSDDLEIPLDGEDPLSELLLTLTELYRLAALIYLYRRILGLP--PSSPEVQ----ELVSK  294

Query  246  LQDLLNEALSSPRIKRSVLWPLVVLGVLAVNGGAGMRAFVREHLPEMSRH-IGSYVPLMA  304
            L +LL+    SP    S+LWPL + G  AV+     R FV + L  + +  +G+     A
Sbjct  295  LLELLDLLPDSPLAISSLLWPLFIAGCEAVDD--DDRDFVLDRLDSLEKSRLGNVR--RA  350

Query  305  KALLEKFWAS---GETSWD  320
            + +LE+ W     GE S D
Sbjct  351  REILEEVWKRRDDGELSID  369



Lambda      K        H        a         alpha
   0.323    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00026251

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  61.3    7e-12


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 61.3 bits (149),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 41/188 (22%), Positives = 71/188 (38%), Gaps = 22/188 (12%)

Query  2    CPKPLF---AEIIRINHLRVQAWKQSPTRPGPLAQEAYGVLNRINTFSSER--WADSKPS  56
            C   LF   +EI  +   +      +   P      A  +  R++++             
Sbjct  192  CSNSLFLLISEISDLAREKRSLRSDNELLPLEFLSRAQELEQRLSSWEPRSDDLEIPLDG  251

Query  57   SKEDWRIV---GESYQAAVSLYCILSLQSLSVLPLNPSLRASCASCGRLLQDLLNEALSS  113
                  ++    E Y+ A  +Y    +  L   P +P ++         L +LL+    S
Sbjct  252  EDPLSELLLTLTELYRLAALIYLYRRILGLP--PSSPEVQ----ELVSKLLELLDLLPDS  305

Query  114  PRIKRSVLWPLVVLGVLAVNGGAGMRAFVREHLPEMSRH-IGSYVPLMAKALLEKFWAS-  171
            P    S+LWPL + G  AV+     R FV + L  + +  +G+     A+ +LE+ W   
Sbjct  306  PLAISSLLWPLFIAGCEAVDD--DDRDFVLDRLDSLEKSRLGNVR--RAREILEEVWKRR  361

Query  172  --GETSWD  177
              GE S D
Sbjct  362  DDGELSID  369



Lambda      K        H        a         alpha
   0.320    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00020770

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  99.4    9e-24


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 99.4 bits (248),  Expect = 9e-24, Method: Composition-based stats.
 Identities = 76/319 (24%), Positives = 122/319 (38%), Gaps = 35/319 (11%)

Query  62   YRYRGLVIRSLR---NDINQGHKRAS--DVVLAGIITLLLVDAQQGASPHWRYHMEGLQK  116
             RY+ L +R L+    +++      S  D VLA I+ L   +   G    WR H+EG + 
Sbjct  64   QRYKSLALRLLQRALAELSSRLSSNSKYDDVLAAILLLCSFEISSGDVSDWRVHLEGAKD  123

Query  117  LILLRGGIRSLAR--SARLAPLLHCFVCIAVIGDTVSPTSHLATSRLRLEESYFILENLG  174
            LI LRGG    +   S+ L  LL  F    ++  T   T+    S    E      + L 
Sbjct  124  LIRLRGGPSKTSSGLSSLLRFLLRNFAYHDILSST---TTGRGPSFPSEEYLDLFGDELE  180

Query  175  NGVFDF---QMCPKPLF---AEIIRINHLRVQAWKQSPTRPGPLAQEAYGVLNRINTFSS  228
             G         C   LF   +EI  +   +      +   P      A  +  R++++  
Sbjct  181  LGSSGLDPLMGCSNSLFLLISEISDLAREKRSLRSDNELLPLEFLSRAQELEQRLSSWEP  240

Query  229  ER--WADSKPSSKEDWRIV---GESYQAAVSLYCILSLQSLSVLPLNPSLRASCASCGRL  283
                             ++    E Y+ A  +Y    +  L   P +P ++         
Sbjct  241  RSDDLEIPLDGEDPLSELLLTLTELYRLAALIYLYRRILGLP--PSSPEVQ----ELVSK  294

Query  284  LQDLLNEALSSPRIKRSVLWPLVVLGVLAVNGGAGMRAFVREHLPEMSRH-IGSYVPLMA  342
            L +LL+    SP    S+LWPL + G  AV+     R FV + L  + +  +G+     A
Sbjct  295  LLELLDLLPDSPLAISSLLWPLFIAGCEAVDD--DDRDFVLDRLDSLEKSRLGNVR--RA  350

Query  343  KALLEKFWAS---GETSWD  358
            + +LE+ W     GE S D
Sbjct  351  REILEEVWKRRDDGELSID  369



Lambda      K        H        a         alpha
   0.324    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00020771

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  90.6    2e-20


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 90.6 bits (225),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 77/340 (23%), Positives = 124/340 (36%), Gaps = 56/340 (16%)

Query  62   YRYRGLVIRSLR---NDINQGHKRAS--DVVLAGIITLLLVDVSLKCSMRNHPPILNHIL  116
             RY+ L +R L+    +++      S  D VLA I+ L   ++S                
Sbjct  64   QRYKSLALRLLQRALAELSSRLSSNSKYDDVLAAILLLCSFEIS----------------  107

Query  117  LRKAQQGASPHWRYHMEGLQKLILLRGGIRSLAR--SARLAPLLHCFVCIAVIGDTVSPT  174
                  G    WR H+EG + LI LRGG    +   S+ L  LL  F    ++  T   T
Sbjct  108  -----SGDVSDWRVHLEGAKDLIRLRGGPSKTSSGLSSLLRFLLRNFAYHDILSST---T  159

Query  175  SHLATSRLRLEESYFILENLGNGVFDF---QMCPKPLF---AEIIRINHLRVQAWKQSPT  228
            +    S    E      + L  G         C   LF   +EI  +   +      +  
Sbjct  160  TGRGPSFPSEEYLDLFGDELELGSSGLDPLMGCSNSLFLLISEISDLAREKRSLRSDNEL  219

Query  229  RPGPLAQEAYGVLNRINTFSSER--WADSKPSSKEDWRIV---GESYQAAVSLYCILSLQ  283
             P      A  +  R++++                   ++    E Y+ A  +Y    + 
Sbjct  220  LPLEFLSRAQELEQRLSSWEPRSDDLEIPLDGEDPLSELLLTLTELYRLAALIYLYRRIL  279

Query  284  SLSVLPLNPSLRASCASCGRLLQDLLNEALSSPRIKRSVLWPLVVLGVLAVNGGAGMRAF  343
             L   P +P ++         L +LL+    SP    S+LWPL + G  AV+     R F
Sbjct  280  GLP--PSSPEVQ----ELVSKLLELLDLLPDSPLAISSLLWPLFIAGCEAVDD--DDRDF  331

Query  344  VREHLPEMSRH-IGSYVPLMAKALLEKFWAS---GETSWD  379
            V + L  + +  +G+     A+ +LE+ W     GE S D
Sbjct  332  VLDRLDSLEKSRLGNVR--RAREILEEVWKRRDDGELSID  369



Lambda      K        H        a         alpha
   0.324    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00020772

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  69.4    4e-14


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 69.4 bits (170),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 60/265 (23%), Positives = 98/265 (37%), Gaps = 30/265 (11%)

Query  1    MEGLQKLILLRGGIRSLAR--SARLAPLLHCFVCIAVIGDTVSPTSHLATSRLRLEESYF  58
            +EG + LI LRGG    +   S+ L  LL  F    ++  T   T+    S    E    
Sbjct  118  LEGAKDLIRLRGGPSKTSSGLSSLLRFLLRNFAYHDILSST---TTGRGPSFPSEEYLDL  174

Query  59   ILENLGNGVFDF---QMCPKPLF---AEIIRINHLRVQAWKQSPTRPGPLAQEAYGVLNR  112
              + L  G         C   LF   +EI  +   +      +   P      A  +  R
Sbjct  175  FGDELELGSSGLDPLMGCSNSLFLLISEISDLAREKRSLRSDNELLPLEFLSRAQELEQR  234

Query  113  INTFSSER--WADSKPSSKEDWRIV---GESYQAAVSLYCILSLQSLSVLPLNPSLRASC  167
            ++++                   ++    E Y+ A  +Y    +  L   P +P ++   
Sbjct  235  LSSWEPRSDDLEIPLDGEDPLSELLLTLTELYRLAALIYLYRRILGLP--PSSPEVQ---  289

Query  168  ASCGRLLQDLLNEALSSPRIKRSVLWPLVVLGVLAVNGGAGMRAFVREHLPEMSRH-IGS  226
                  L +LL+    SP    S+LWPL + G  AV+     R FV + L  + +  +G+
Sbjct  290  -ELVSKLLELLDLLPDSPLAISSLLWPLFIAGCEAVDD--DDRDFVLDRLDSLEKSRLGN  346

Query  227  YVPLMAKALLEKFWAS---GETSWD  248
                 A+ +LE+ W     GE S D
Sbjct  347  VR--RAREILEEVWKRRDDGELSID  369



Lambda      K        H        a         alpha
   0.322    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0725    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00020775

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00026252

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00026253

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00020776

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00020777

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.118    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00020778

Length=290


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00020779

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  215     2e-70


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 215 bits (549),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 86/184 (47%), Positives = 110/184 (60%), Gaps = 5/184 (3%)

Query  24   GAGISTAAGIPDFRSPETGIYDRLKPLHLPYPEAIFHINYFRHTPEPFYAIARARHPRSL  83
            GAGIST +GIPDFRS + G+Y +L P  L  PEA F        PEPFY IAR   P   
Sbjct  1    GAGISTESGIPDFRS-DDGLYAKLAPEELASPEAFFSNPELVWDPEPFYNIARELLPGEA  59

Query  84   KPTITHAFLALLEKKGLLHFVFTQNIDGLERDVGIPEDKILNAHGSWRTQRCWKCKTPYP  143
            +P   H F+A LE KG L  + TQNIDGL    G    K++  HGS+   RC  C   Y 
Sbjct  60   QPNPAHYFIAKLEDKGKLLRLITQNIDGLHERAGSK--KVVELHGSFAKARCVSCHQKYT  117

Query  144  DDLMKQAISTGTVPYCQVPDCGGAVKPDIVFFGQPLPAEFDEKEKEVSEADMMLVMGTSL  203
             + + + I    VP+C  P CGG +KPDIVFFG+ LP +F    +++ EAD+++V+GTSL
Sbjct  118  GETLYERIRPEKVPHC--PQCGGLLKPDIVFFGENLPDKFHRAYEDLEEADLLIVIGTSL  175

Query  204  KVAP  207
            KV P
Sbjct  176  KVYP  179



Lambda      K        H        a         alpha
   0.319    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00026254

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  215     2e-70


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 215 bits (549),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 86/184 (47%), Positives = 110/184 (60%), Gaps = 5/184 (3%)

Query  24   GAGISTAAGIPDFRSPETGIYDRLKPLHLPYPEAIFHINYFRHTPEPFYAIARARHPRSL  83
            GAGIST +GIPDFRS + G+Y +L P  L  PEA F        PEPFY IAR   P   
Sbjct  1    GAGISTESGIPDFRS-DDGLYAKLAPEELASPEAFFSNPELVWDPEPFYNIARELLPGEA  59

Query  84   KPTITHAFLALLEKKGLLHFVFTQNIDGLERDVGIPEDKILNAHGSWRTQRCWKCKTPYP  143
            +P   H F+A LE KG L  + TQNIDGL    G    K++  HGS+   RC  C   Y 
Sbjct  60   QPNPAHYFIAKLEDKGKLLRLITQNIDGLHERAGSK--KVVELHGSFAKARCVSCHQKYT  117

Query  144  DDLMKQAISTGTVPYCQVPDCGGAVKPDIVFFGQPLPAEFDEKEKEVSEADMMLVMGTSL  203
             + + + I    VP+C  P CGG +KPDIVFFG+ LP +F    +++ EAD+++V+GTSL
Sbjct  118  GETLYERIRPEKVPHC--PQCGGLLKPDIVFFGENLPDKFHRAYEDLEEADLLIVIGTSL  175

Query  204  KVAP  207
            KV P
Sbjct  176  KVYP  179



Lambda      K        H        a         alpha
   0.319    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00020780

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  214     3e-69


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 214 bits (547),  Expect = 3e-69, Method: Composition-based stats.
 Identities = 86/184 (47%), Positives = 110/184 (60%), Gaps = 5/184 (3%)

Query  100  GAGISTAAGIPDFRSPETGIYDRLKPLHLPYPEAIFHINYFRHTPEPFYAIARARHPRSL  159
            GAGIST +GIPDFRS + G+Y +L P  L  PEA F        PEPFY IAR   P   
Sbjct  1    GAGISTESGIPDFRS-DDGLYAKLAPEELASPEAFFSNPELVWDPEPFYNIARELLPGEA  59

Query  160  KPTITHAFLALLEKKGLLHFVFTQNIDGLERDVGIPEDKILNAHGSWRTQRCWKCKTPYP  219
            +P   H F+A LE KG L  + TQNIDGL    G    K++  HGS+   RC  C   Y 
Sbjct  60   QPNPAHYFIAKLEDKGKLLRLITQNIDGLHERAGSK--KVVELHGSFAKARCVSCHQKYT  117

Query  220  DDLMKQAISTGTVPYCQVPDCGGAVKPDIVFFGQPLPAEFDEKEKEVSEADMMLVMGTSL  279
             + + + I    VP+C  P CGG +KPDIVFFG+ LP +F    +++ EAD+++V+GTSL
Sbjct  118  GETLYERIRPEKVPHC--PQCGGLLKPDIVFFGENLPDKFHRAYEDLEEADLLIVIGTSL  175

Query  280  KVAP  283
            KV P
Sbjct  176  KVYP  179



Lambda      K        H        a         alpha
   0.318    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00020781

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  215     7e-70


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 215 bits (549),  Expect = 7e-70, Method: Composition-based stats.
 Identities = 86/184 (47%), Positives = 110/184 (60%), Gaps = 5/184 (3%)

Query  65   GAGISTAAGIPDFRSPETGIYDRLKPLHLPYPEAIFHINYFRHTPEPFYAIARARHPRSL  124
            GAGIST +GIPDFRS + G+Y +L P  L  PEA F        PEPFY IAR   P   
Sbjct  1    GAGISTESGIPDFRS-DDGLYAKLAPEELASPEAFFSNPELVWDPEPFYNIARELLPGEA  59

Query  125  KPTITHAFLALLEKKGLLHFVFTQNIDGLERDVGIPEDKILNAHGSWRTQRCWKCKTPYP  184
            +P   H F+A LE KG L  + TQNIDGL    G    K++  HGS+   RC  C   Y 
Sbjct  60   QPNPAHYFIAKLEDKGKLLRLITQNIDGLHERAGSK--KVVELHGSFAKARCVSCHQKYT  117

Query  185  DDLMKQAISTGTVPYCQVPDCGGAVKPDIVFFGQPLPAEFDEKEKEVSEADMMLVMGTSL  244
             + + + I    VP+C  P CGG +KPDIVFFG+ LP +F    +++ EAD+++V+GTSL
Sbjct  118  GETLYERIRPEKVPHC--PQCGGLLKPDIVFFGENLPDKFHRAYEDLEEADLLIVIGTSL  175

Query  245  KVAP  248
            KV P
Sbjct  176  KVYP  179



Lambda      K        H        a         alpha
   0.319    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00020782

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  215     2e-70


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 215 bits (549),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 86/184 (47%), Positives = 110/184 (60%), Gaps = 5/184 (3%)

Query  24   GAGISTAAGIPDFRSPETGIYDRLKPLHLPYPEAIFHINYFRHTPEPFYAIARARHPRSL  83
            GAGIST +GIPDFRS + G+Y +L P  L  PEA F        PEPFY IAR   P   
Sbjct  1    GAGISTESGIPDFRS-DDGLYAKLAPEELASPEAFFSNPELVWDPEPFYNIARELLPGEA  59

Query  84   KPTITHAFLALLEKKGLLHFVFTQNIDGLERDVGIPEDKILNAHGSWRTQRCWKCKTPYP  143
            +P   H F+A LE KG L  + TQNIDGL    G    K++  HGS+   RC  C   Y 
Sbjct  60   QPNPAHYFIAKLEDKGKLLRLITQNIDGLHERAGSK--KVVELHGSFAKARCVSCHQKYT  117

Query  144  DDLMKQAISTGTVPYCQVPDCGGAVKPDIVFFGQPLPAEFDEKEKEVSEADMMLVMGTSL  203
             + + + I    VP+C  P CGG +KPDIVFFG+ LP +F    +++ EAD+++V+GTSL
Sbjct  118  GETLYERIRPEKVPHC--PQCGGLLKPDIVFFGENLPDKFHRAYEDLEEADLLIVIGTSL  175

Query  204  KVAP  207
            KV P
Sbjct  176  KVYP  179



Lambda      K        H        a         alpha
   0.319    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00020783

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  215     2e-70


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 215 bits (549),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 86/184 (47%), Positives = 110/184 (60%), Gaps = 5/184 (3%)

Query  24   GAGISTAAGIPDFRSPETGIYDRLKPLHLPYPEAIFHINYFRHTPEPFYAIARARHPRSL  83
            GAGIST +GIPDFRS + G+Y +L P  L  PEA F        PEPFY IAR   P   
Sbjct  1    GAGISTESGIPDFRS-DDGLYAKLAPEELASPEAFFSNPELVWDPEPFYNIARELLPGEA  59

Query  84   KPTITHAFLALLEKKGLLHFVFTQNIDGLERDVGIPEDKILNAHGSWRTQRCWKCKTPYP  143
            +P   H F+A LE KG L  + TQNIDGL    G    K++  HGS+   RC  C   Y 
Sbjct  60   QPNPAHYFIAKLEDKGKLLRLITQNIDGLHERAGSK--KVVELHGSFAKARCVSCHQKYT  117

Query  144  DDLMKQAISTGTVPYCQVPDCGGAVKPDIVFFGQPLPAEFDEKEKEVSEADMMLVMGTSL  203
             + + + I    VP+C  P CGG +KPDIVFFG+ LP +F    +++ EAD+++V+GTSL
Sbjct  118  GETLYERIRPEKVPHC--PQCGGLLKPDIVFFGENLPDKFHRAYEDLEEADLLIVIGTSL  175

Query  204  KVAP  207
            KV P
Sbjct  176  KVYP  179



Lambda      K        H        a         alpha
   0.319    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00020786

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  136     1e-37


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 136 bits (345),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 58/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)

Query  18   WSDE-LIDELKSALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPN  72
            W  +  ++E+K  L     F P ++FW    QM T+ V QA  M     +  +P      
Sbjct  189  WCTKTKVEEVKRLLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQA  248

Query  73   LNSITVIIALPLVTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGP  132
             N+I V+I +P+  +  YP   +      PL+++A+G FL +LA   AA +Q     +GP
Sbjct  249  FNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGP  308

Query  133  CYEHPRACAASMNGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQ  192
             +            +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I 
Sbjct  309  EF----------PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLIT  358

Query  193  ALYGLTAAGGSIIALALTPTNKDPDLLGM  221
             L+ LT A G+ ++  +      P  +  
Sbjct  359  GLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.324    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00020785

Length=206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  114     5e-31


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 114 bits (288),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 49/177 (28%), Positives = 82/177 (46%), Gaps = 14/177 (8%)

Query  1    MTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPLVTKFAYPFLHRRGIPTPPLR  56
            M T+ V QA  M     +  +P       N+I V+I +P+  +  YP   +      PL+
Sbjct  221  MGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQ  280

Query  57   RVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASMNGSLPNHVNIGYQSPVYVLE  116
            ++A+G FL +LA   AA +Q     +GP +            +    +++ +  P Y+L 
Sbjct  281  KMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------PIAQEVPISVLWLIPQYLLI  330

Query  117  GLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSIIALALTPTNKDPDLLGM  173
            G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ ++  +      P  +  
Sbjct  331  GFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.320    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00026255

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  137     9e-39


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 137 bits (347),  Expect = 9e-39, Method: Composition-based stats.
 Identities = 58/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)

Query  18   WSDE-LIDELKSALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPN  72
            W  +  ++E+K  L     F P ++FW    QM T+ V QA  M     +  +P      
Sbjct  189  WCTKTKVEEVKRLLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQA  248

Query  73   LNSITVIIALPLVTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGP  132
             N+I V+I +P+  +  YP   +      PL+++A+G FL +LA   AA +Q     +GP
Sbjct  249  FNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGP  308

Query  133  CYEHPRACAASMNGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQ  192
             +            +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I 
Sbjct  309  EF----------PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLIT  358

Query  193  ALYGLTAAGGSIIALALTPTNKDPDLLGM  221
             L+ LT A G+ ++  +      P  +  
Sbjct  359  GLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.321    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00020787

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  153     4e-43


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 153 bits (388),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 78/317 (25%), Positives = 137/317 (43%), Gaps = 36/317 (11%)

Query  2    NIGA-QSRIAATFMEKDIDFWAAYLLSLCSIVTGVLLLYVGRRFIIVSAPQGSVLLPAVQ  60
            N G+  S I   +++++  +   + L    ++  +L+  +G R      P+G+VL    +
Sbjct  81   NAGSLISTIITPYLQQNYGYPLGFGLPAVGMIIALLVFLLGSRMYKKKPPKGNVLTKVFK  140

Query  61   ALWIAIRHGFR--------------MDAARPDAVARDGITVT------WSDE-LIDELKS  99
             L +A  +  +                A   DA+   GI V       W  +  ++E+K 
Sbjct  141  VLPVAAWNKVKLNGSSAGIKKLHWLDWARELDALIILGIVVPGIFFNIWCTKTKVEEVKR  200

Query  100  ALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPL  155
             L     F P ++FW    QM T+ V QA  M     +  +P       N+I V+I +P+
Sbjct  201  LLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPI  260

Query  156  VTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASM  215
              +  YP   +      PL+++A+G FL +LA   AA +Q     +GP +          
Sbjct  261  FDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------  310

Query  216  NGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSI  275
              +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ 
Sbjct  311  PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNF  370

Query  276  IALALTPTNKDPDLLGM  292
            ++  +      P  +  
Sbjct  371  LSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.325    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 497069440


Query= TCONS_00026257

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  137     9e-39


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 137 bits (347),  Expect = 9e-39, Method: Composition-based stats.
 Identities = 58/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)

Query  18   WSDE-LIDELKSALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPN  72
            W  +  ++E+K  L     F P ++FW    QM T+ V QA  M     +  +P      
Sbjct  189  WCTKTKVEEVKRLLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQA  248

Query  73   LNSITVIIALPLVTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGP  132
             N+I V+I +P+  +  YP   +      PL+++A+G FL +LA   AA +Q     +GP
Sbjct  249  FNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGP  308

Query  133  CYEHPRACAASMNGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQ  192
             +            +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I 
Sbjct  309  EF----------PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLIT  358

Query  193  ALYGLTAAGGSIIALALTPTNKDPDLLGM  221
             L+ LT A G+ ++  +      P  +  
Sbjct  359  GLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.321    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00026256

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  114     8e-30


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 114 bits (287),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 49/177 (28%), Positives = 82/177 (46%), Gaps = 14/177 (8%)

Query  1    MTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPLVTKFAYPFLHRRGIPTPPLR  56
            M T+ V QA  M     +  +P       N+I V+I +P+  +  YP   +      PL+
Sbjct  221  MGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQ  280

Query  57   RVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASMNGSLPNHVNIGYQSPVYVLE  116
            ++A+G FL +LA   AA +Q     +GP +            +    +++ +  P Y+L 
Sbjct  281  KMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------PIAQEVPISVLWLIPQYLLI  330

Query  117  GLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSIIALALTPTNKDPDLLGM  173
            G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ ++  +      P  +  
Sbjct  331  GFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.323    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00020788

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  153     4e-43


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 153 bits (388),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 78/317 (25%), Positives = 137/317 (43%), Gaps = 36/317 (11%)

Query  2    NIGA-QSRIAATFMEKDIDFWAAYLLSLCSIVTGVLLLYVGRRFIIVSAPQGSVLLPAVQ  60
            N G+  S I   +++++  +   + L    ++  +L+  +G R      P+G+VL    +
Sbjct  81   NAGSLISTIITPYLQQNYGYPLGFGLPAVGMIIALLVFLLGSRMYKKKPPKGNVLTKVFK  140

Query  61   ALWIAIRHGFR--------------MDAARPDAVARDGITVT------WSDE-LIDELKS  99
             L +A  +  +                A   DA+   GI V       W  +  ++E+K 
Sbjct  141  VLPVAAWNKVKLNGSSAGIKKLHWLDWARELDALIILGIVVPGIFFNIWCTKTKVEEVKR  200

Query  100  ALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPL  155
             L     F P ++FW    QM T+ V QA  M     +  +P       N+I V+I +P+
Sbjct  201  LLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPI  260

Query  156  VTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASM  215
              +  YP   +      PL+++A+G FL +LA   AA +Q     +GP +          
Sbjct  261  FDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------  310

Query  216  NGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSI  275
              +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ 
Sbjct  311  PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNF  370

Query  276  IALALTPTNKDPDLLGM  292
            ++  +      P  +  
Sbjct  371  LSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.325    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 497069440


Query= TCONS_00026258

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  136     1e-37


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 136 bits (345),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 58/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)

Query  18   WSDE-LIDELKSALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPN  72
            W  +  ++E+K  L     F P ++FW    QM T+ V QA  M     +  +P      
Sbjct  189  WCTKTKVEEVKRLLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQA  248

Query  73   LNSITVIIALPLVTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGP  132
             N+I V+I +P+  +  YP   +      PL+++A+G FL +LA   AA +Q     +GP
Sbjct  249  FNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGP  308

Query  133  CYEHPRACAASMNGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQ  192
             +            +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I 
Sbjct  309  EF----------PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLIT  358

Query  193  ALYGLTAAGGSIIALALTPTNKDPDLLGM  221
             L+ LT A G+ ++  +      P  +  
Sbjct  359  GLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.324    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00026259

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  153     4e-43


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 153 bits (388),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 78/317 (25%), Positives = 137/317 (43%), Gaps = 36/317 (11%)

Query  2    NIGA-QSRIAATFMEKDIDFWAAYLLSLCSIVTGVLLLYVGRRFIIVSAPQGSVLLPAVQ  60
            N G+  S I   +++++  +   + L    ++  +L+  +G R      P+G+VL    +
Sbjct  81   NAGSLISTIITPYLQQNYGYPLGFGLPAVGMIIALLVFLLGSRMYKKKPPKGNVLTKVFK  140

Query  61   ALWIAIRHGFR--------------MDAARPDAVARDGITVT------WSDE-LIDELKS  99
             L +A  +  +                A   DA+   GI V       W  +  ++E+K 
Sbjct  141  VLPVAAWNKVKLNGSSAGIKKLHWLDWARELDALIILGIVVPGIFFNIWCTKTKVEEVKR  200

Query  100  ALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPL  155
             L     F P ++FW    QM T+ V QA  M     +  +P       N+I V+I +P+
Sbjct  201  LLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPI  260

Query  156  VTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASM  215
              +  YP   +      PL+++A+G FL +LA   AA +Q     +GP +          
Sbjct  261  FDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------  310

Query  216  NGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSI  275
              +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ 
Sbjct  311  PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNF  370

Query  276  IALALTPTNKDPDLLGM  292
            ++  +      P  +  
Sbjct  371  LSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.325    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 497069440


Query= TCONS_00020789

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  136     1e-37


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 136 bits (345),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 58/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)

Query  18   WSDE-LIDELKSALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPN  72
            W  +  ++E+K  L     F P ++FW    QM T+ V QA  M     +  +P      
Sbjct  189  WCTKTKVEEVKRLLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQA  248

Query  73   LNSITVIIALPLVTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGP  132
             N+I V+I +P+  +  YP   +      PL+++A+G FL +LA   AA +Q     +GP
Sbjct  249  FNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGP  308

Query  133  CYEHPRACAASMNGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQ  192
             +            +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I 
Sbjct  309  EF----------PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLIT  358

Query  193  ALYGLTAAGGSIIALALTPTNKDPDLLGM  221
             L+ LT A G+ ++  +      P  +  
Sbjct  359  GLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.324    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00026260

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  153     4e-43


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 153 bits (388),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 78/317 (25%), Positives = 137/317 (43%), Gaps = 36/317 (11%)

Query  2    NIGA-QSRIAATFMEKDIDFWAAYLLSLCSIVTGVLLLYVGRRFIIVSAPQGSVLLPAVQ  60
            N G+  S I   +++++  +   + L    ++  +L+  +G R      P+G+VL    +
Sbjct  81   NAGSLISTIITPYLQQNYGYPLGFGLPAVGMIIALLVFLLGSRMYKKKPPKGNVLTKVFK  140

Query  61   ALWIAIRHGFR--------------MDAARPDAVARDGITVT------WSDE-LIDELKS  99
             L +A  +  +                A   DA+   GI V       W  +  ++E+K 
Sbjct  141  VLPVAAWNKVKLNGSSAGIKKLHWLDWARELDALIILGIVVPGIFFNIWCTKTKVEEVKR  200

Query  100  ALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPL  155
             L     F P ++FW    QM T+ V QA  M     +  +P       N+I V+I +P+
Sbjct  201  LLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPI  260

Query  156  VTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASM  215
              +  YP   +      PL+++A+G FL +LA   AA +Q     +GP +          
Sbjct  261  FDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------  310

Query  216  NGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSI  275
              +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ 
Sbjct  311  PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNF  370

Query  276  IALALTPTNKDPDLLGM  292
            ++  +      P  +  
Sbjct  371  LSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.325    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 497069440


Query= TCONS_00020790

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  137     9e-39


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 137 bits (347),  Expect = 9e-39, Method: Composition-based stats.
 Identities = 58/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)

Query  18   WSDE-LIDELKSALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPN  72
            W  +  ++E+K  L     F P ++FW    QM T+ V QA  M     +  +P      
Sbjct  189  WCTKTKVEEVKRLLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQA  248

Query  73   LNSITVIIALPLVTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGP  132
             N+I V+I +P+  +  YP   +      PL+++A+G FL +LA   AA +Q     +GP
Sbjct  249  FNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGP  308

Query  133  CYEHPRACAASMNGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQ  192
             +            +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I 
Sbjct  309  EF----------PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLIT  358

Query  193  ALYGLTAAGGSIIALALTPTNKDPDLLGM  221
             L+ LT A G+ ++  +      P  +  
Sbjct  359  GLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.321    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00026261

Length=206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  114     5e-31


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 114 bits (288),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 49/177 (28%), Positives = 82/177 (46%), Gaps = 14/177 (8%)

Query  1    MTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPLVTKFAYPFLHRRGIPTPPLR  56
            M T+ V QA  M     +  +P       N+I V+I +P+  +  YP   +      PL+
Sbjct  221  MGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQ  280

Query  57   RVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASMNGSLPNHVNIGYQSPVYVLE  116
            ++A+G FL +LA   AA +Q     +GP +            +    +++ +  P Y+L 
Sbjct  281  KMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------PIAQEVPISVLWLIPQYLLI  330

Query  117  GLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSIIALALTPTNKDPDLLGM  173
            G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ ++  +      P  +  
Sbjct  331  GFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.320    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00020791

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  152     8e-44


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 152 bits (387),  Expect = 8e-44, Method: Composition-based stats.
 Identities = 78/317 (25%), Positives = 137/317 (43%), Gaps = 36/317 (11%)

Query  2    NIGA-QSRIAATFMEKDIDFWAAYLLSLCSIVTGVLLLYVGRRFIIVSAPQGSVLLPAVQ  60
            N G+  S I   +++++  +   + L    ++  +L+  +G R      P+G+VL    +
Sbjct  81   NAGSLISTIITPYLQQNYGYPLGFGLPAVGMIIALLVFLLGSRMYKKKPPKGNVLTKVFK  140

Query  61   ALWIAIRHGFR--------------MDAARPDAVARDGITVT------WSDE-LIDELKS  99
             L +A  +  +                A   DA+   GI V       W  +  ++E+K 
Sbjct  141  VLPVAAWNKVKLNGSSAGIKKLHWLDWARELDALIILGIVVPGIFFNIWCTKTKVEEVKR  200

Query  100  ALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPL  155
             L     F P ++FW    QM T+ V QA  M     +  +P       N+I V+I +P+
Sbjct  201  LLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPI  260

Query  156  VTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASM  215
              +  YP   +      PL+++A+G FL +LA   AA +Q     +GP +          
Sbjct  261  FDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------  310

Query  216  NGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSI  275
              +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ 
Sbjct  311  PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNF  370

Query  276  IALALTPTNKDPDLLGM  292
            ++  +      P  +  
Sbjct  371  LSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.324    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 379043084


Query= TCONS_00020792

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  178     2e-51


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 178 bits (453),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 96/409 (23%), Positives = 177/409 (43%), Gaps = 48/409 (12%)

Query  17   YRTVLLSMTLYVLGVAVLFATSIPSMLHRGAGLPGLIVAMILVSLSLGGIKASLPPHACS  76
            +RT+ L   +Y +G  +L  ++IPS L     +    + + L++L  GGIK ++      
Sbjct  1    FRTIFLGSIIYAIGHILLALSAIPS-LRPPVHVALFFIGLALIALGTGGIKPNVSSFGGD  59

Query  77   VVKSSSGSGLPRKENALLLIPTSHWNMLLMCMNIGA-QSRIAATFMEKDIDFWAAYLLSL  135
              + +     PR+ +         +++    +N G+  S I   +++++  +   + L  
Sbjct  60   QFEETD----PRRRSRF-------FSIFYFSINAGSLISTIITPYLQQNYGYPLGFGLPA  108

Query  136  CSIVTGVLLLYVGRRFIIVSAPQGSVLLPAVQALWIAIRHGFR--------------MDA  181
              ++  +L+  +G R      P+G+VL    + L +A  +  +                A
Sbjct  109  VGMIIALLVFLLGSRMYKKKPPKGNVLTKVFKVLPVAAWNKVKLNGSSAGIKKLHWLDWA  168

Query  182  ARPDAVARDGITVT------WSDE-LIDELKSALFACRAFTPFVIFWLCQAQMTTNTVSQ  234
               DA+   GI V       W  +  ++E+K  L     F P ++FW    QM T+ V Q
Sbjct  169  RELDALIILGIVVPGIFFNIWCTKTKVEEVKRLLRVLPLFLPLIMFWALYDQMGTSWVLQ  228

Query  235  AAEME----THRVPNDMLPNLNSITVIIALPLVTKFAYPFLHRRGIPTPPLRRVALGFFL  290
            A  M     +  +P       N+I V+I +P+  +  YP   +      PL+++A+G FL
Sbjct  229  ARTMNRKIGSFEIPPAQFQAFNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQKMAVGLFL  288

Query  291  EALAMGYAAGIQGWIYSSGPCYEHPRACAASMNGSLPNHVNIGYQSPVYVLEGLSEIFAS  350
             +LA   AA +Q     +GP +            +    +++ +  P Y+L G  E+F S
Sbjct  289  ASLAFAIAAIVQLKRNDTGPEF----------PIAQEVPISVLWLIPQYLLIGFGELFIS  338

Query  351  PAGYEYTFTKAPKSMKSIIQALYGLTAAGGSIIALALTPTNKDPDLLGM  399
              G E+ +  APKSM S+I  L+ LT A G+ ++  +      P  +  
Sbjct  339  IGGLEFFYKLAPKSMTSLITGLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.325    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00020793

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  152     8e-44


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 152 bits (387),  Expect = 8e-44, Method: Composition-based stats.
 Identities = 78/317 (25%), Positives = 137/317 (43%), Gaps = 36/317 (11%)

Query  2    NIGA-QSRIAATFMEKDIDFWAAYLLSLCSIVTGVLLLYVGRRFIIVSAPQGSVLLPAVQ  60
            N G+  S I   +++++  +   + L    ++  +L+  +G R      P+G+VL    +
Sbjct  81   NAGSLISTIITPYLQQNYGYPLGFGLPAVGMIIALLVFLLGSRMYKKKPPKGNVLTKVFK  140

Query  61   ALWIAIRHGFR--------------MDAARPDAVARDGITVT------WSDE-LIDELKS  99
             L +A  +  +                A   DA+   GI V       W  +  ++E+K 
Sbjct  141  VLPVAAWNKVKLNGSSAGIKKLHWLDWARELDALIILGIVVPGIFFNIWCTKTKVEEVKR  200

Query  100  ALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPL  155
             L     F P ++FW    QM T+ V QA  M     +  +P       N+I V+I +P+
Sbjct  201  LLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPI  260

Query  156  VTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASM  215
              +  YP   +      PL+++A+G FL +LA   AA +Q     +GP +          
Sbjct  261  FDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------  310

Query  216  NGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSI  275
              +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ 
Sbjct  311  PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNF  370

Query  276  IALALTPTNKDPDLLGM  292
            ++  +      P  +  
Sbjct  371  LSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.324    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 379043084


Query= TCONS_00020800

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  136     1e-37


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 136 bits (345),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 58/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)

Query  18   WSDE-LIDELKSALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPN  72
            W  +  ++E+K  L     F P ++FW    QM T+ V QA  M     +  +P      
Sbjct  189  WCTKTKVEEVKRLLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQA  248

Query  73   LNSITVIIALPLVTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGP  132
             N+I V+I +P+  +  YP   +      PL+++A+G FL +LA   AA +Q     +GP
Sbjct  249  FNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGP  308

Query  133  CYEHPRACAASMNGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQ  192
             +            +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I 
Sbjct  309  EF----------PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLIT  358

Query  193  ALYGLTAAGGSIIALALTPTNKDPDLLGM  221
             L+ LT A G+ ++  +      P  +  
Sbjct  359  GLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.324    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00026262

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  137     9e-39


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 137 bits (347),  Expect = 9e-39, Method: Composition-based stats.
 Identities = 58/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)

Query  18   WSDE-LIDELKSALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPN  72
            W  +  ++E+K  L     F P ++FW    QM T+ V QA  M     +  +P      
Sbjct  189  WCTKTKVEEVKRLLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQA  248

Query  73   LNSITVIIALPLVTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGP  132
             N+I V+I +P+  +  YP   +      PL+++A+G FL +LA   AA +Q     +GP
Sbjct  249  FNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGP  308

Query  133  CYEHPRACAASMNGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQ  192
             +            +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I 
Sbjct  309  EF----------PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLIT  358

Query  193  ALYGLTAAGGSIIALALTPTNKDPDLLGM  221
             L+ LT A G+ ++  +      P  +  
Sbjct  359  GLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.321    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00020794

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  152     8e-44


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 152 bits (387),  Expect = 8e-44, Method: Composition-based stats.
 Identities = 78/317 (25%), Positives = 137/317 (43%), Gaps = 36/317 (11%)

Query  2    NIGA-QSRIAATFMEKDIDFWAAYLLSLCSIVTGVLLLYVGRRFIIVSAPQGSVLLPAVQ  60
            N G+  S I   +++++  +   + L    ++  +L+  +G R      P+G+VL    +
Sbjct  81   NAGSLISTIITPYLQQNYGYPLGFGLPAVGMIIALLVFLLGSRMYKKKPPKGNVLTKVFK  140

Query  61   ALWIAIRHGFR--------------MDAARPDAVARDGITVT------WSDE-LIDELKS  99
             L +A  +  +                A   DA+   GI V       W  +  ++E+K 
Sbjct  141  VLPVAAWNKVKLNGSSAGIKKLHWLDWARELDALIILGIVVPGIFFNIWCTKTKVEEVKR  200

Query  100  ALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPL  155
             L     F P ++FW    QM T+ V QA  M     +  +P       N+I V+I +P+
Sbjct  201  LLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPI  260

Query  156  VTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASM  215
              +  YP   +      PL+++A+G FL +LA   AA +Q     +GP +          
Sbjct  261  FDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------  310

Query  216  NGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSI  275
              +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ 
Sbjct  311  PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNF  370

Query  276  IALALTPTNKDPDLLGM  292
            ++  +      P  +  
Sbjct  371  LSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.324    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 379043084


Query= TCONS_00026263

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  168     4e-48


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 168 bits (427),  Expect = 4e-48, Method: Composition-based stats.
 Identities = 94/409 (23%), Positives = 173/409 (42%), Gaps = 54/409 (13%)

Query  70   YRTVLLSMTLYVLGVAVLFATSIPSMLHRGAGLPGLIVAMILVSLSLGGIKASLPPHACS  129
            +RT+ L   +Y +G  +L  ++IPS L     +    + + L++L  GGIK ++      
Sbjct  1    FRTIFLGSIIYAIGHILLALSAIPS-LRPPVHVALFFIGLALIALGTGGIKPNVSSFGGD  59

Query  130  VVKSSSGSGLPRKENALLLIPTSHWNMLLMCMNIGA-QSRIAATFMEKDIDFWAAYLLSL  188
              + +     PR+ +         +++    +N G+  S I   +++++  +   + L  
Sbjct  60   QFEETD----PRRRSRF-------FSIFYFSINAGSLISTIITPYLQQNYGYPLGFGLPA  108

Query  189  CSIVTGVLLLYVGRRF------ISYVLLPAVQALWIAIRHGFR--------------MDA  228
              ++  +L+  +G R          VL    + L +A  +  +                A
Sbjct  109  VGMIIALLVFLLGSRMYKKKPPKGNVLTKVFKVLPVAAWNKVKLNGSSAGIKKLHWLDWA  168

Query  229  ARPDAVARDGITVT------WSDE-LIDELKSALFACRAFTPFVIFWLCQAQMTTNTVSQ  281
               DA+   GI V       W  +  ++E+K  L     F P ++FW    QM T+ V Q
Sbjct  169  RELDALIILGIVVPGIFFNIWCTKTKVEEVKRLLRVLPLFLPLIMFWALYDQMGTSWVLQ  228

Query  282  AAEME----THRVPNDMLPNLNSITVIIALPLVTKFAYPFLHRRGIPTPPLRRVALGFFL  337
            A  M     +  +P       N+I V+I +P+  +  YP   +      PL+++A+G FL
Sbjct  229  ARTMNRKIGSFEIPPAQFQAFNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQKMAVGLFL  288

Query  338  EALAMGYAAGIQGWIYSSGPCYEHPRACAASMNGSLPNHVNIGYQSPVYVLEGLSEIFAS  397
             +LA   AA +Q     +GP +            +    +++ +  P Y+L G  E+F S
Sbjct  289  ASLAFAIAAIVQLKRNDTGPEF----------PIAQEVPISVLWLIPQYLLIGFGELFIS  338

Query  398  PAGYEYTFTKAPKSMKSIIQALYGLTAAGGSIIALALTPTNKDPDLLGM  446
              G E+ +  APKSM S+I  L+ LT A G+ ++  +      P  +  
Sbjct  339  IGGLEFFYKLAPKSMTSLITGLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.323    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00026264

Length=206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  114     5e-31


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 114 bits (288),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 49/177 (28%), Positives = 82/177 (46%), Gaps = 14/177 (8%)

Query  1    MTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPLVTKFAYPFLHRRGIPTPPLR  56
            M T+ V QA  M     +  +P       N+I V+I +P+  +  YP   +      PL+
Sbjct  221  MGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQ  280

Query  57   RVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASMNGSLPNHVNIGYQSPVYVLE  116
            ++A+G FL +LA   AA +Q     +GP +            +    +++ +  P Y+L 
Sbjct  281  KMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------PIAQEVPISVLWLIPQYLLI  330

Query  117  GLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSIIALALTPTNKDPDLLGM  173
            G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ ++  +      P  +  
Sbjct  331  GFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.320    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0633    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00026265

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  136     1e-37


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 136 bits (345),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 58/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)

Query  18   WSDE-LIDELKSALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPN  72
            W  +  ++E+K  L     F P ++FW    QM T+ V QA  M     +  +P      
Sbjct  189  WCTKTKVEEVKRLLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQA  248

Query  73   LNSITVIIALPLVTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGP  132
             N+I V+I +P+  +  YP   +      PL+++A+G FL +LA   AA +Q     +GP
Sbjct  249  FNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGP  308

Query  133  CYEHPRACAASMNGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQ  192
             +            +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I 
Sbjct  309  EF----------PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLIT  358

Query  193  ALYGLTAAGGSIIALALTPTNKDPDLLGM  221
             L+ LT A G+ ++  +      P  +  
Sbjct  359  GLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.324    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00020802

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  153     4e-43


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 153 bits (388),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 78/317 (25%), Positives = 137/317 (43%), Gaps = 36/317 (11%)

Query  2    NIGA-QSRIAATFMEKDIDFWAAYLLSLCSIVTGVLLLYVGRRFIIVSAPQGSVLLPAVQ  60
            N G+  S I   +++++  +   + L    ++  +L+  +G R      P+G+VL    +
Sbjct  81   NAGSLISTIITPYLQQNYGYPLGFGLPAVGMIIALLVFLLGSRMYKKKPPKGNVLTKVFK  140

Query  61   ALWIAIRHGFR--------------MDAARPDAVARDGITVT------WSDE-LIDELKS  99
             L +A  +  +                A   DA+   GI V       W  +  ++E+K 
Sbjct  141  VLPVAAWNKVKLNGSSAGIKKLHWLDWARELDALIILGIVVPGIFFNIWCTKTKVEEVKR  200

Query  100  ALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPL  155
             L     F P ++FW    QM T+ V QA  M     +  +P       N+I V+I +P+
Sbjct  201  LLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPI  260

Query  156  VTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASM  215
              +  YP   +      PL+++A+G FL +LA   AA +Q     +GP +          
Sbjct  261  FDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------  310

Query  216  NGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSI  275
              +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ 
Sbjct  311  PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNF  370

Query  276  IALALTPTNKDPDLLGM  292
            ++  +      P  +  
Sbjct  371  LSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.325    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 497069440


Query= TCONS_00020798

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  136     1e-37


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 136 bits (345),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 58/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)

Query  18   WSDE-LIDELKSALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPN  72
            W  +  ++E+K  L     F P ++FW    QM T+ V QA  M     +  +P      
Sbjct  189  WCTKTKVEEVKRLLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQA  248

Query  73   LNSITVIIALPLVTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGP  132
             N+I V+I +P+  +  YP   +      PL+++A+G FL +LA   AA +Q     +GP
Sbjct  249  FNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGP  308

Query  133  CYEHPRACAASMNGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQ  192
             +            +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I 
Sbjct  309  EF----------PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLIT  358

Query  193  ALYGLTAAGGSIIALALTPTNKDPDLLGM  221
             L+ LT A G+ ++  +      P  +  
Sbjct  359  GLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.324    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00020799

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  153     4e-43


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 153 bits (388),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 78/317 (25%), Positives = 137/317 (43%), Gaps = 36/317 (11%)

Query  2    NIGA-QSRIAATFMEKDIDFWAAYLLSLCSIVTGVLLLYVGRRFIIVSAPQGSVLLPAVQ  60
            N G+  S I   +++++  +   + L    ++  +L+  +G R      P+G+VL    +
Sbjct  81   NAGSLISTIITPYLQQNYGYPLGFGLPAVGMIIALLVFLLGSRMYKKKPPKGNVLTKVFK  140

Query  61   ALWIAIRHGFR--------------MDAARPDAVARDGITVT------WSDE-LIDELKS  99
             L +A  +  +                A   DA+   GI V       W  +  ++E+K 
Sbjct  141  VLPVAAWNKVKLNGSSAGIKKLHWLDWARELDALIILGIVVPGIFFNIWCTKTKVEEVKR  200

Query  100  ALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPL  155
             L     F P ++FW    QM T+ V QA  M     +  +P       N+I V+I +P+
Sbjct  201  LLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPI  260

Query  156  VTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASM  215
              +  YP   +      PL+++A+G FL +LA   AA +Q     +GP +          
Sbjct  261  FDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------  310

Query  216  NGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSI  275
              +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ 
Sbjct  311  PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNF  370

Query  276  IALALTPTNKDPDLLGM  292
            ++  +      P  +  
Sbjct  371  LSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.325    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 497069440


Query= TCONS_00020801

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  136     1e-37


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 136 bits (345),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 58/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)

Query  18   WSDE-LIDELKSALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPN  72
            W  +  ++E+K  L     F P ++FW    QM T+ V QA  M     +  +P      
Sbjct  189  WCTKTKVEEVKRLLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQA  248

Query  73   LNSITVIIALPLVTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGP  132
             N+I V+I +P+  +  YP   +      PL+++A+G FL +LA   AA +Q     +GP
Sbjct  249  FNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGP  308

Query  133  CYEHPRACAASMNGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQ  192
             +            +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I 
Sbjct  309  EF----------PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLIT  358

Query  193  ALYGLTAAGGSIIALALTPTNKDPDLLGM  221
             L+ LT A G+ ++  +      P  +  
Sbjct  359  GLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.324    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00020797

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  136     1e-37


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 136 bits (345),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 58/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)

Query  18   WSDE-LIDELKSALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPN  72
            W  +  ++E+K  L     F P ++FW    QM T+ V QA  M     +  +P      
Sbjct  189  WCTKTKVEEVKRLLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQA  248

Query  73   LNSITVIIALPLVTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGP  132
             N+I V+I +P+  +  YP   +      PL+++A+G FL +LA   AA +Q     +GP
Sbjct  249  FNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGP  308

Query  133  CYEHPRACAASMNGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQ  192
             +            +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I 
Sbjct  309  EF----------PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLIT  358

Query  193  ALYGLTAAGGSIIALALTPTNKDPDLLGM  221
             L+ LT A G+ ++  +      P  +  
Sbjct  359  GLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.324    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00020796

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  169     1e-47


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 169 bits (429),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 94/409 (23%), Positives = 173/409 (42%), Gaps = 54/409 (13%)

Query  70   YRTVLLSMTLYVLGVAVLFATSIPSMLHRGAGLPGLIVAMILVSLSLGGIKASLPPHACS  129
            +RT+ L   +Y +G  +L  ++IPS L     +    + + L++L  GGIK ++      
Sbjct  1    FRTIFLGSIIYAIGHILLALSAIPS-LRPPVHVALFFIGLALIALGTGGIKPNVSSFGGD  59

Query  130  VVKSSSGSGLPRKENALLLIPTSHWNMLLMCMNIGA-QSRIAATFMEKDIDFWAAYLLSL  188
              + +     PR+ +         +++    +N G+  S I   +++++  +   + L  
Sbjct  60   QFEETD----PRRRSRF-------FSIFYFSINAGSLISTIITPYLQQNYGYPLGFGLPA  108

Query  189  CSIVTGVLLLYVGRRF------ISYVLLPAVQALWIAIRHGFR--------------MDA  228
              ++  +L+  +G R          VL    + L +A  +  +                A
Sbjct  109  VGMIIALLVFLLGSRMYKKKPPKGNVLTKVFKVLPVAAWNKVKLNGSSAGIKKLHWLDWA  168

Query  229  ARPDAVARDGITVT------WSDE-LIDELKSALFACRAFTPFVIFWLCQAQMTTNTVSQ  281
               DA+   GI V       W  +  ++E+K  L     F P ++FW    QM T+ V Q
Sbjct  169  RELDALIILGIVVPGIFFNIWCTKTKVEEVKRLLRVLPLFLPLIMFWALYDQMGTSWVLQ  228

Query  282  AAEME----THRVPNDMLPNLNSITVIIALPLVTKFAYPFLHRRGIPTPPLRRVALGFFL  337
            A  M     +  +P       N+I V+I +P+  +  YP   +      PL+++A+G FL
Sbjct  229  ARTMNRKIGSFEIPPAQFQAFNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQKMAVGLFL  288

Query  338  EALAMGYAAGIQGWIYSSGPCYEHPRACAASMNGSLPNHVNIGYQSPVYVLEGLSEIFAS  397
             +LA   AA +Q     +GP +            +    +++ +  P Y+L G  E+F S
Sbjct  289  ASLAFAIAAIVQLKRNDTGPEF----------PIAQEVPISVLWLIPQYLLIGFGELFIS  338

Query  398  PAGYEYTFTKAPKSMKSIIQALYGLTAAGGSIIALALTPTNKDPDLLGM  446
              G E+ +  APKSM S+I  L+ LT A G+ ++  +      P  +  
Sbjct  339  IGGLEFFYKLAPKSMTSLITGLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.324    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 703875588


Query= TCONS_00020795

Length=206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  114     5e-31


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 114 bits (288),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 49/177 (28%), Positives = 82/177 (46%), Gaps = 14/177 (8%)

Query  1    MTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPLVTKFAYPFLHRRGIPTPPLR  56
            M T+ V QA  M     +  +P       N+I V+I +P+  +  YP   +      PL+
Sbjct  221  MGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQ  280

Query  57   RVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASMNGSLPNHVNIGYQSPVYVLE  116
            ++A+G FL +LA   AA +Q     +GP +            +    +++ +  P Y+L 
Sbjct  281  KMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------PIAQEVPISVLWLIPQYLLI  330

Query  117  GLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSIIALALTPTNKDPDLLGM  173
            G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ ++  +      P  +  
Sbjct  331  GFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.320    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00026266

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  114     8e-30


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 114 bits (287),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 49/177 (28%), Positives = 82/177 (46%), Gaps = 14/177 (8%)

Query  1    MTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPLVTKFAYPFLHRRGIPTPPLR  56
            M T+ V QA  M     +  +P       N+I V+I +P+  +  YP   +      PL+
Sbjct  221  MGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQ  280

Query  57   RVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASMNGSLPNHVNIGYQSPVYVLE  116
            ++A+G FL +LA   AA +Q     +GP +            +    +++ +  P Y+L 
Sbjct  281  KMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------PIAQEVPISVLWLIPQYLLI  330

Query  117  GLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSIIALALTPTNKDPDLLGM  173
            G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ ++  +      P  +  
Sbjct  331  GFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.323    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00026267

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  114     8e-30


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 114 bits (287),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 49/177 (28%), Positives = 82/177 (46%), Gaps = 14/177 (8%)

Query  1    MTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPLVTKFAYPFLHRRGIPTPPLR  56
            M T+ V QA  M     +  +P       N+I V+I +P+  +  YP   +      PL+
Sbjct  221  MGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQ  280

Query  57   RVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASMNGSLPNHVNIGYQSPVYVLE  116
            ++A+G FL +LA   AA +Q     +GP +            +    +++ +  P Y+L 
Sbjct  281  KMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------PIAQEVPISVLWLIPQYLLI  330

Query  117  GLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSIIALALTPTNKDPDLLGM  173
            G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ ++  +      P  +  
Sbjct  331  GFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.323    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00020803

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00020804

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  152     8e-44


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 152 bits (387),  Expect = 8e-44, Method: Composition-based stats.
 Identities = 78/317 (25%), Positives = 137/317 (43%), Gaps = 36/317 (11%)

Query  2    NIGA-QSRIAATFMEKDIDFWAAYLLSLCSIVTGVLLLYVGRRFIIVSAPQGSVLLPAVQ  60
            N G+  S I   +++++  +   + L    ++  +L+  +G R      P+G+VL    +
Sbjct  81   NAGSLISTIITPYLQQNYGYPLGFGLPAVGMIIALLVFLLGSRMYKKKPPKGNVLTKVFK  140

Query  61   ALWIAIRHGFR--------------MDAARPDAVARDGITVT------WSDE-LIDELKS  99
             L +A  +  +                A   DA+   GI V       W  +  ++E+K 
Sbjct  141  VLPVAAWNKVKLNGSSAGIKKLHWLDWARELDALIILGIVVPGIFFNIWCTKTKVEEVKR  200

Query  100  ALFACRAFTPFVIFWLCQAQMTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPL  155
             L     F P ++FW    QM T+ V QA  M     +  +P       N+I V+I +P+
Sbjct  201  LLRVLPLFLPLIMFWALYDQMGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPI  260

Query  156  VTKFAYPFLHRRGIPTPPLRRVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASM  215
              +  YP   +      PL+++A+G FL +LA   AA +Q     +GP +          
Sbjct  261  FDRLVYPLGRKCTGGLTPLQKMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------  310

Query  216  NGSLPNHVNIGYQSPVYVLEGLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSI  275
              +    +++ +  P Y+L G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ 
Sbjct  311  PIAQEVPISVLWLIPQYLLIGFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNF  370

Query  276  IALALTPTNKDPDLLGM  292
            ++  +      P  +  
Sbjct  371  LSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.324    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 379043084


Query= TCONS_00020805

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425909 pfam00854, PTR2, POT family. The POT (proton-dependent...  114     8e-30


>CDD:425909 pfam00854, PTR2, POT family.  The POT (proton-dependent oligopeptide 
transport) family all appear to be proton dependent 
transporters.
Length=392

 Score = 114 bits (287),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 49/177 (28%), Positives = 82/177 (46%), Gaps = 14/177 (8%)

Query  1    MTTNTVSQAAEME----THRVPNDMLPNLNSITVIIALPLVTKFAYPFLHRRGIPTPPLR  56
            M T+ V QA  M     +  +P       N+I V+I +P+  +  YP   +      PL+
Sbjct  221  MGTSWVLQARTMNRKIGSFEIPPAQFQAFNAILVLIFIPIFDRLVYPLGRKCTGGLTPLQ  280

Query  57   RVALGFFLEALAMGYAAGIQGWIYSSGPCYEHPRACAASMNGSLPNHVNIGYQSPVYVLE  116
            ++A+G FL +LA   AA +Q     +GP +            +    +++ +  P Y+L 
Sbjct  281  KMAVGLFLASLAFAIAAIVQLKRNDTGPEF----------PIAQEVPISVLWLIPQYLLI  330

Query  117  GLSEIFASPAGYEYTFTKAPKSMKSIIQALYGLTAAGGSIIALALTPTNKDPDLLGM  173
            G  E+F S  G E+ +  APKSM S+I  L+ LT A G+ ++  +      P  +  
Sbjct  331  GFGELFISIGGLEFFYKLAPKSMTSLITGLFLLTNALGNFLSGVIATLTAKPTNVLG  387



Lambda      K        H        a         alpha
   0.323    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00026268

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00020806

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00020807

Length=298


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00020809

Length=238


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00020808

Length=365


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00026269

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.140    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00020810

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.145    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00020811

Length=599


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 757674996


Query= TCONS_00020812

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395586 pfam00723, Glyco_hydro_15, Glycosyl hydrolases family ...  278     3e-90
CDD:425821 pfam00686, CBM_20, Starch binding domain                   112     7e-31


>CDD:395586 pfam00723, Glyco_hydro_15, Glycosyl hydrolases family 15.  In 
higher organisms this family is represented by phosphorylase 
kinase subunits.
Length=417

 Score = 278 bits (713),  Expect = 3e-90, Method: Composition-based stats.
 Identities = 107/303 (35%), Positives = 147/303 (49%), Gaps = 29/303 (10%)

Query  2    LTYIRQLIQQGKQSVASNLIWPVVANDLTYVAQYWNHTGFDLWEEIDGSSFFTTAVQHRA  61
               + Q    G   V  + +  VV N L YV   WN   F LWEE  G SFF++A+  +A
Sbjct  131  ALALIQYTANG--LVIIDTLDEVVKNLLDYVEAAWNEPDFGLWEENGGRSFFSSAMMWKA  188

Query  62   MVEGSAIAQALGKPHAG--YDAVAPEILCLL--QSYWNESAIISNINVN-NGRSGIDLNS  116
            ++E    A+  G   +   +++ A EIL  L  + +W        +  +   RSG+D + 
Sbjct  189  LLEAIDFAELFGDHGSAQLWESTADEILNKLQKRGFWPLFNTYIQLYGSFEYRSGLDASL  248

Query  117  VLTSIHTFDPAAGCDDSTFQPCSSKALANHKVYVDSFRSIYGINAGLGPGKAANVGRYAE  176
            +L  I  FDP              + LA  K  +DS  S   +N+G        V RY E
Sbjct  249  LLLPILGFDPPDD----------PRILATLKYILDSLLSDGFLNSGESDPL---VRRYPE  295

Query  177  DVYQG-----GNPWYLATLAAAEQLYDALYQWKKQGYLTVTQTSLAFFRDF-SSTVEPGT  230
            DVY       GNPWYL T  AAEQLYD LY W  +G  T+T+ +  FF    SSTV  GT
Sbjct  296  DVYPDVVGLSGNPWYLCTFWAAEQLYDELYHWAGRGRWTLTRYARGFFEKLVSSTV--GT  353

Query  231  YKSNTPTYKSLTDYVRTYADDFFFLVEKYTPSNGSLAEQYDRNTGVPLSANDLTWSYAAF  290
               ++ ++ S+   V+ YAD F   VE+Y  S G L+E+ D  TG  L A  LT+S+AA 
Sbjct  354  P-YSSSSFISIPLAVKEYADGFVKAVEEYANSLGLLSEEVDVYTGEQLGAFPLTFSHAAL  412

Query  291  LST  293
            L  
Sbjct  413  LRA  415


>CDD:425821 pfam00686, CBM_20, Starch binding domain.  
Length=95

 Score = 112 bits (282),  Expect = 7e-31, Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 55/97 (57%), Gaps = 2/97 (2%)

Query  346  VPVTFWLIENTYYGENVYMTGNVSALGDWNASAGYSLNAGLYTSDENLWFATVKGLEPGV  405
            V VTF +   T YG++VY+ G++  LG+WN     +L+A  Y+S   LW  TV  L  G 
Sbjct  1    VSVTFNVNATTQYGQSVYIVGSIPELGNWNPKKAIALSASEYSS-YPLWSGTVS-LPAGT  58

Query  406  TMEYKFYKIEPGNSVTFEGGENRVYAVPTACPVAPQV  442
            T+EYK+ K++   SVT+E G NR Y VP +       
Sbjct  59   TIEYKYIKVDSDGSVTWESGPNRSYTVPASGASTTTT  95



Lambda      K        H        a         alpha
   0.316    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00020813

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  92.7    7e-24
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          75.7    2e-17


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 92.7 bits (231),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 42/103 (41%), Gaps = 19/103 (18%)

Query  48   DAIVKVLHTTICGTDLHILQGHVATCTPGRILGHEGVGVIDSLGAAVTNFKAGQT-----  102
            + +VKV    ICG+DLHI +G         ILGHE  G +  +G  VT  K G       
Sbjct  2    EVLVKVKAAGICGSDLHIYKGGNPPVKLPLILGHEFAGEVVEVGPGVTGLKVGDRVVVEP  61

Query  103  -------------MPSQCESGGWILGNKIDGTQAEYVRIPHAS  132
                           + C   G  LG   DG  AEYV +P  +
Sbjct  62   LIPCGKCEYCREGRYNLCP-NGRFLGYDRDGGFAEYVVVPERN  103


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 75.7 bits (187),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 33/133 (25%), Positives = 64/133 (48%), Gaps = 5/133 (4%)

Query  180  PIGLMILQMAKNLFGPAMTVVVGRGQPRLEIANAMGADHTLSVLGGQDEVISAALAVTKE  239
             +GL  +Q+AK   G A  + V   + +LE+A  +GADH ++    + +++     +T  
Sbjct  1    GVGLAAIQLAK-AAG-AKVIAVDGSEEKLELAKELGADHVINP--KETDLVEEIKELTGG  56

Query  240  RGFDVVIEAVGTVESFAIAQALVGAGGTLASLGVFGESCELRLEKLWHRNICLRTRLVDG  299
            +G DVV + VG+  +   A  L+  GG +  +G+ G    L L  L  + + +    +  
Sbjct  57   KGVDVVFDCVGSPATLEQALKLLRPGGRVVVVGLPGGPLPLPLAPLLLKELTILGSFLGS  116

Query  300  VST-PDLLKMVEA  311
                P+ L ++ +
Sbjct  117  PEEFPEALDLLAS  129



Lambda      K        H        a         alpha
   0.320    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00026270

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrola...  239     1e-77


>CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain 
(DUF2235).  This domain, found in various hypothetical bacterial 
proteins, has no known function.
Length=284

 Score = 239 bits (611),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 97/254 (38%), Positives = 125/254 (49%), Gaps = 40/254 (16%)

Query  17   GTWQDSLADGAQPPSNLTRFSRALSRLAVVDGEDGQQYEIPQIVYYQKGVGT--------  68
            GTW +   DG  PPSN+ R  RAL R       DG     PQIVYYQ GVGT        
Sbjct  9    GTWNNF--DGDDPPSNVLRLYRALDR----SDPDG----GPQIVYYQPGVGTGTYVILTR  58

Query  69   --SLGDKYWGGVAGLGVSANVRAAYGFLADNYNDGDKIYFFGFSRGAYTARAVAGLVCKW  126
              S  DK   G  G G+ A+VR AY FL  NY  GD+IY FGFSRGAYTAR++AG++ K 
Sbjct  59   LKSKLDKLLDGAFGSGLDAHVREAYRFLMRNYEPGDEIYLFGFSRGAYTARSLAGMIHKV  118

Query  127  GLLTPRGMDNFALVYDDFYNQKIEGYDAERRKRMGFRDPL----------PRFTVEIIGV  176
            GLLT    +     Y  + +++     +E       +             P   ++ +GV
Sbjct  119  GLLTRGNEEQVPFAYKLYRDREDRDQPSEPESTEKRKPYYMKAFRKTFSRPDVPIKFLGV  178

Query  177  WDTVG----FQKAWLGRDAGEKLELRNTILQDNVRYAFHALSLDEERTAFQPIVWHIP--  230
            WDTVG     +  WL R    K    +T L  +V +A HAL+LDE R  F+P +W  P  
Sbjct  179  WDTVGSLGIPEPPWL-RRLNRKFPFTDTSLSPSVEHARHALALDERRAKFRPTLWERPDD  237

Query  231  ---HRNEGQEMLQC  241
                  EGQ++ Q 
Sbjct  238  YPPKPEEGQDLKQV  251



Lambda      K        H        a         alpha
   0.319    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00020814

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrola...  84.6    4e-20


>CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain 
(DUF2235).  This domain, found in various hypothetical bacterial 
proteins, has no known function.
Length=284

 Score = 84.6 bits (210),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 33/127 (26%), Positives = 52/127 (41%), Gaps = 20/127 (16%)

Query  1    MDNFALVYDDFYNQKIEGYDAERRKRMGFRDPL----------PRFTVEIIGVWDTVG--  48
             +     Y  + +++     +E       +             P   ++ +GVWDTVG  
Sbjct  126  EEQVPFAYKLYRDREDRDQPSEPESTEKRKPYYMKAFRKTFSRPDVPIKFLGVWDTVGSL  185

Query  49   --FQKAWLGRDAGEKLELRNTILQDNVRYAFHALSLDEERTAFQPIVWHIP-----HRNE  101
               +  WL R    K    +T L  +V +A HAL+LDE R  F+P +W  P        E
Sbjct  186  GIPEPPWL-RRLNRKFPFTDTSLSPSVEHARHALALDERRAKFRPTLWERPDDYPPKPEE  244

Query  102  GQEMLQC  108
            GQ++ Q 
Sbjct  245  GQDLKQV  251



Lambda      K        H        a         alpha
   0.319    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00020815

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28             165     3e-49


>CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28.  
Length=192

 Score = 165 bits (421),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 70/222 (32%), Positives = 94/222 (42%), Gaps = 36/222 (16%)

Query  238  NVIAQTKGGDPNNVVALGGHTDSVEAGPGINDDGSGIISNLVVAKALTRFSV-KNAVRFC  296
            NVIA+  G  P+ VV L  H DSV  GPG +D+ SG+ + L +A+ L      K +VRF 
Sbjct  1    NVIAKLPGKAPDEVVLLSAHYDSVGTGPGADDNASGVAALLELARVLAAGQRPKRSVRFL  60

Query  297  FWTAEEFGLLGSNYYVNSLNATEQAKIRLYLNFDMIASPNYALMIYDGDGSAFNLTGPAG  356
            F+ AEE GLLGS+++  S       KIR  +N DMI S   AL+           +GP G
Sbjct  61   FFDAEEAGLLGSHHFAKS--HPPLKKIRAVINLDMIGSGGPALLF---------QSGPKG  109

Query  357  SAQIERLFEDYY-----TSIRKPFVPTEFNGRSDYQAFILNGIPAGGLFTGAEAIKTEEQ  411
            S+ +E+  +        T    PF      GRSD+  FI  GIP   L            
Sbjct  110  SSLLEKYLKAAAKPYGVTLAEDPFQERGGPGRSDHAPFIKAGIPGLDL------------  157

Query  412  AQLFGGQAGVALDANYHAKGDNMTNLNREAFLINSRATAFAV  453
                   A       YH   D + N++              V
Sbjct  158  -------AFTDFGYRYHTPADTIDNIDPGTLQRIGDLVLALV  192



Lambda      K        H        a         alpha
   0.317    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 620767060


Query= TCONS_00020817

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrola...  134     3e-40


>CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain 
(DUF2235).  This domain, found in various hypothetical bacterial 
proteins, has no known function.
Length=284

 Score = 134 bits (339),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 52/158 (33%), Positives = 74/158 (47%), Gaps = 24/158 (15%)

Query  1    MDNFALVYDDFYNQKIEGYDAERRKRMGFRDPL----------PRFTVEIIGVWDTVG--  48
             +     Y  + +++     +E       +             P   ++ +GVWDTVG  
Sbjct  126  EEQVPFAYKLYRDREDRDQPSEPESTEKRKPYYMKAFRKTFSRPDVPIKFLGVWDTVGSL  185

Query  49   --FQKAWLGRDAGEKLELRNTILQDNVRYAFHALSLDEERTAFQPIVWHIP-----HRNE  101
               +  WL R    K    +T L  +V +A HAL+LDE R  F+P +W  P        E
Sbjct  186  GIPEPPWL-RRLNRKFPFTDTSLSPSVEHARHALALDERRAKFRPTLWERPDDYPPKPEE  244

Query  102  GQEMLQVWFSGVHTDVGGG----DENPRLSNITLAWMI  135
            GQ++ QVWF GVH+DVGGG    +    LS+I LAWMI
Sbjct  245  GQDLKQVWFPGVHSDVGGGYVDDELGESLSDIPLAWMI  282



Lambda      K        H        a         alpha
   0.323    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00020816

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrola...  287     6e-98


>CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain 
(DUF2235).  This domain, found in various hypothetical bacterial 
proteins, has no known function.
Length=284

 Score = 287 bits (736),  Expect = 6e-98, Method: Composition-based stats.
 Identities = 116/285 (41%), Positives = 147/285 (52%), Gaps = 44/285 (15%)

Query  17   GTWQDSLADGAQPPSNLTRFSRALSRLAVVDGEDGQQYEIPQIVYYQKGVGT--------  68
            GTW +   DG  PPSN+ R  RAL R       DG     PQIVYYQ GVGT        
Sbjct  9    GTWNNF--DGDDPPSNVLRLYRALDR----SDPDG----GPQIVYYQPGVGTGTYVILTR  58

Query  69   --SLGDKYWGGVAGLGVSANVRAAYGFLADNYNDGDKIYFFGFSRGAYTARAVAGLVCKW  126
              S  DK   G  G G+ A+VR AY FL  NY  GD+IY FGFSRGAYTAR++AG++ K 
Sbjct  59   LKSKLDKLLDGAFGSGLDAHVREAYRFLMRNYEPGDEIYLFGFSRGAYTARSLAGMIHKV  118

Query  127  GLLTPRGMDNFALVYDDFYNQKIEGYDAERRKRMGFRDPL----------PRFTVEIIGV  176
            GLLT    +     Y  + +++     +E       +             P   ++ +GV
Sbjct  119  GLLTRGNEEQVPFAYKLYRDREDRDQPSEPESTEKRKPYYMKAFRKTFSRPDVPIKFLGV  178

Query  177  WDTVG----FQKAWLGRDAGEKLELRNTILQDNVRYAFHALSLDEERTAFQPIVWHIP--  230
            WDTVG     +  WL R    K    +T L  +V +A HAL+LDE R  F+P +W  P  
Sbjct  179  WDTVGSLGIPEPPWL-RRLNRKFPFTDTSLSPSVEHARHALALDERRAKFRPTLWERPDD  237

Query  231  ---HRNEGQEMLQVWFSGVHTDVGGG----DENPRLSNITLAWMI  268
                  EGQ++ QVWF GVH+DVGGG    +    LS+I LAWMI
Sbjct  238  YPPKPEEGQDLKQVWFPGVHSDVGGGYVDDELGESLSDIPLAWMI  282



Lambda      K        H        a         alpha
   0.321    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00020818

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrola...  262     1e-86


>CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain 
(DUF2235).  This domain, found in various hypothetical bacterial 
proteins, has no known function.
Length=284

 Score = 262 bits (672),  Expect = 1e-86, Method: Composition-based stats.
 Identities = 103/262 (39%), Positives = 133/262 (51%), Gaps = 40/262 (15%)

Query  23   KRLIVCCDGTWQDSLADGAQPPSNLTRFSRALSRLAVVDGEDGQQYEIPQIVYYQKGVGT  82
            KRL++CCDGTW +   DG  PPSN+ R  RAL R       DG     PQIVYYQ GVGT
Sbjct  1    KRLVLCCDGTWNNF--DGDDPPSNVLRLYRALDR----SDPDG----GPQIVYYQPGVGT  50

Query  83   ----------SLGDKYWGGVAGLGVSANVRAAYGFLADNYNDGDKIYFFGFSRGAYTARA  132
                      S  DK   G  G G+ A+VR AY FL  NY  GD+IY FGFSRGAYTAR+
Sbjct  51   GTYVILTRLKSKLDKLLDGAFGSGLDAHVREAYRFLMRNYEPGDEIYLFGFSRGAYTARS  110

Query  133  VAGLVCKWGLLTPRGMDNFALVYDDFYNQKIEGYDAERRKRMGFRDPL----------PR  182
            +AG++ K GLLT    +     Y  + +++     +E       +             P 
Sbjct  111  LAGMIHKVGLLTRGNEEQVPFAYKLYRDREDRDQPSEPESTEKRKPYYMKAFRKTFSRPD  170

Query  183  FTVEIIGVWDTVG----FQKAWLGRDAGEKLELRNTILQDNVRYAFHALSLDEERTAFQP  238
              ++ +GVWDTVG     +  WL R    K    +T L  +V +A HAL+LDE R  F+P
Sbjct  171  VPIKFLGVWDTVGSLGIPEPPWL-RRLNRKFPFTDTSLSPSVEHARHALALDERRAKFRP  229

Query  239  IVWHIP-----HRNEGQEMLQC  255
             +W  P        EGQ++ Q 
Sbjct  230  TLWERPDDYPPKPEEGQDLKQV  251



Lambda      K        H        a         alpha
   0.319    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00026272

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrola...  235     3e-78


>CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain 
(DUF2235).  This domain, found in various hypothetical bacterial 
proteins, has no known function.
Length=284

 Score = 235 bits (601),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 86/215 (40%), Positives = 115/215 (53%), Gaps = 24/215 (11%)

Query  31   GVAGLGVSANVRAAYGFLADNYNDGDKIYFFGFSRGAYTARAVAGLVCKWGLLTPRGMDN  90
            G  G G+ A+VR AY FL  NY  GD+IY FGFSRGAYTAR++AG++ K GLLT    + 
Sbjct  69   GAFGSGLDAHVREAYRFLMRNYEPGDEIYLFGFSRGAYTARSLAGMIHKVGLLTRGNEEQ  128

Query  91   FALVYDDFYNQKIEGYDAERRKRMGFRDPL----------PRFTVEIIGVWDTVG----F  136
                Y  + +++     +E       +             P   ++ +GVWDTVG     
Sbjct  129  VPFAYKLYRDREDRDQPSEPESTEKRKPYYMKAFRKTFSRPDVPIKFLGVWDTVGSLGIP  188

Query  137  QKAWLGRDAGEKLELRNTILQDNVRYAFHALSLDEERTAFQPIVWHIP-----HRNEGQE  191
            +  WL R    K    +T L  +V +A HAL+LDE R  F+P +W  P        EGQ+
Sbjct  189  EPPWL-RRLNRKFPFTDTSLSPSVEHARHALALDERRAKFRPTLWERPDDYPPKPEEGQD  247

Query  192  MLQVWFSGVHTDVGGG----DENPRLSNITLAWMI  222
            + QVWF GVH+DVGGG    +    LS+I LAWMI
Sbjct  248  LKQVWFPGVHSDVGGGYVDDELGESLSDIPLAWMI  282



Lambda      K        H        a         alpha
   0.322    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00020819

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrola...  134     3e-40


>CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain 
(DUF2235).  This domain, found in various hypothetical bacterial 
proteins, has no known function.
Length=284

 Score = 134 bits (339),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 52/158 (33%), Positives = 74/158 (47%), Gaps = 24/158 (15%)

Query  1    MDNFALVYDDFYNQKIEGYDAERRKRMGFRDPL----------PRFTVEIIGVWDTVG--  48
             +     Y  + +++     +E       +             P   ++ +GVWDTVG  
Sbjct  126  EEQVPFAYKLYRDREDRDQPSEPESTEKRKPYYMKAFRKTFSRPDVPIKFLGVWDTVGSL  185

Query  49   --FQKAWLGRDAGEKLELRNTILQDNVRYAFHALSLDEERTAFQPIVWHIP-----HRNE  101
               +  WL R    K    +T L  +V +A HAL+LDE R  F+P +W  P        E
Sbjct  186  GIPEPPWL-RRLNRKFPFTDTSLSPSVEHARHALALDERRAKFRPTLWERPDDYPPKPEE  244

Query  102  GQEMLQVWFSGVHTDVGGG----DENPRLSNITLAWMI  135
            GQ++ QVWF GVH+DVGGG    +    LS+I LAWMI
Sbjct  245  GQDLKQVWFPGVHSDVGGGYVDDELGESLSDIPLAWMI  282



Lambda      K        H        a         alpha
   0.323    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00020821

Length=521
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28             167     2e-49


>CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28.  
Length=192

 Score = 167 bits (424),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 70/222 (32%), Positives = 94/222 (42%), Gaps = 36/222 (16%)

Query  258  NVIAQTKGGDPNNVVALGGHTDSVEAGPGINDDGSGIISNLVVAKALTRFSV-KNAVRFC  316
            NVIA+  G  P+ VV L  H DSV  GPG +D+ SG+ + L +A+ L      K +VRF 
Sbjct  1    NVIAKLPGKAPDEVVLLSAHYDSVGTGPGADDNASGVAALLELARVLAAGQRPKRSVRFL  60

Query  317  FWTAEEFGLLGSNYYVNSLNATEQAKIRLYLNFDMIASPNYALMIYDGDGSAFNLTGPAG  376
            F+ AEE GLLGS+++  S       KIR  +N DMI S   AL+           +GP G
Sbjct  61   FFDAEEAGLLGSHHFAKS--HPPLKKIRAVINLDMIGSGGPALLF---------QSGPKG  109

Query  377  SAQIERLFEDYY-----TSIRKPFVPTEFNGRSDYQAFILNGIPAGGLFTGAEAIKTEEQ  431
            S+ +E+  +        T    PF      GRSD+  FI  GIP   L            
Sbjct  110  SSLLEKYLKAAAKPYGVTLAEDPFQERGGPGRSDHAPFIKAGIPGLDL------------  157

Query  432  AQLFGGQAGVALDANYHAKGDNMTNLNREAFLINSRATAFAV  473
                   A       YH   D + N++              V
Sbjct  158  -------AFTDFGYRYHTPADTIDNIDPGTLQRIGDLVLALV  192



Lambda      K        H        a         alpha
   0.317    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 651048380


Query= TCONS_00020823

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28             165     3e-49


>CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28.  
Length=192

 Score = 165 bits (421),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 70/222 (32%), Positives = 94/222 (42%), Gaps = 36/222 (16%)

Query  238  NVIAQTKGGDPNNVVALGGHTDSVEAGPGINDDGSGIISNLVVAKALTRFSV-KNAVRFC  296
            NVIA+  G  P+ VV L  H DSV  GPG +D+ SG+ + L +A+ L      K +VRF 
Sbjct  1    NVIAKLPGKAPDEVVLLSAHYDSVGTGPGADDNASGVAALLELARVLAAGQRPKRSVRFL  60

Query  297  FWTAEEFGLLGSNYYVNSLNATEQAKIRLYLNFDMIASPNYALMIYDGDGSAFNLTGPAG  356
            F+ AEE GLLGS+++  S       KIR  +N DMI S   AL+           +GP G
Sbjct  61   FFDAEEAGLLGSHHFAKS--HPPLKKIRAVINLDMIGSGGPALLF---------QSGPKG  109

Query  357  SAQIERLFEDYY-----TSIRKPFVPTEFNGRSDYQAFILNGIPAGGLFTGAEAIKTEEQ  411
            S+ +E+  +        T    PF      GRSD+  FI  GIP   L            
Sbjct  110  SSLLEKYLKAAAKPYGVTLAEDPFQERGGPGRSDHAPFIKAGIPGLDL------------  157

Query  412  AQLFGGQAGVALDANYHAKGDNMTNLNREAFLINSRATAFAV  453
                   A       YH   D + N++              V
Sbjct  158  -------AFTDFGYRYHTPADTIDNIDPGTLQRIGDLVLALV  192



Lambda      K        H        a         alpha
   0.317    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0633    0.140     1.90     42.6     43.6 

Effective search space used: 620767060


Query= TCONS_00020820

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28             165     3e-49


>CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28.  
Length=192

 Score = 165 bits (421),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 70/222 (32%), Positives = 94/222 (42%), Gaps = 36/222 (16%)

Query  238  NVIAQTKGGDPNNVVALGGHTDSVEAGPGINDDGSGIISNLVVAKALTRFSV-KNAVRFC  296
            NVIA+  G  P+ VV L  H DSV  GPG +D+ SG+ + L +A+ L      K +VRF 
Sbjct  1    NVIAKLPGKAPDEVVLLSAHYDSVGTGPGADDNASGVAALLELARVLAAGQRPKRSVRFL  60

Query  297  FWTAEEFGLLGSNYYVNSLNATEQAKIRLYLNFDMIASPNYALMIYDGDGSAFNLTGPAG  356
            F+ AEE GLLGS+++  S       KIR  +N DMI S   AL+           +GP G
Sbjct  61   FFDAEEAGLLGSHHFAKS--HPPLKKIRAVINLDMIGSGGPALLF---------QSGPKG  109

Query  357  SAQIERLFEDYY-----TSIRKPFVPTEFNGRSDYQAFILNGIPAGGLFTGAEAIKTEEQ  411
            S+ +E+  +        T    PF      GRSD+  FI  GIP   L            
Sbjct  110  SSLLEKYLKAAAKPYGVTLAEDPFQERGGPGRSDHAPFIKAGIPGLDL------------  157

Query  412  AQLFGGQAGVALDANYHAKGDNMTNLNREAFLINSRATAFAV  453
                   A       YH   D + N++              V
Sbjct  158  -------AFTDFGYRYHTPADTIDNIDPGTLQRIGDLVLALV  192



Lambda      K        H        a         alpha
   0.317    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 620767060


Query= TCONS_00020822

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28             165     3e-49


>CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28.  
Length=192

 Score = 165 bits (421),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 70/222 (32%), Positives = 94/222 (42%), Gaps = 36/222 (16%)

Query  238  NVIAQTKGGDPNNVVALGGHTDSVEAGPGINDDGSGIISNLVVAKALTRFSV-KNAVRFC  296
            NVIA+  G  P+ VV L  H DSV  GPG +D+ SG+ + L +A+ L      K +VRF 
Sbjct  1    NVIAKLPGKAPDEVVLLSAHYDSVGTGPGADDNASGVAALLELARVLAAGQRPKRSVRFL  60

Query  297  FWTAEEFGLLGSNYYVNSLNATEQAKIRLYLNFDMIASPNYALMIYDGDGSAFNLTGPAG  356
            F+ AEE GLLGS+++  S       KIR  +N DMI S   AL+           +GP G
Sbjct  61   FFDAEEAGLLGSHHFAKS--HPPLKKIRAVINLDMIGSGGPALLF---------QSGPKG  109

Query  357  SAQIERLFEDYY-----TSIRKPFVPTEFNGRSDYQAFILNGIPAGGLFTGAEAIKTEEQ  411
            S+ +E+  +        T    PF      GRSD+  FI  GIP   L            
Sbjct  110  SSLLEKYLKAAAKPYGVTLAEDPFQERGGPGRSDHAPFIKAGIPGLDL------------  157

Query  412  AQLFGGQAGVALDANYHAKGDNMTNLNREAFLINSRATAFAV  453
                   A       YH   D + N++              V
Sbjct  158  -------AFTDFGYRYHTPADTIDNIDPGTLQRIGDLVLALV  192



Lambda      K        H        a         alpha
   0.317    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 620767060


Query= TCONS_00026273

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28             165     2e-49


>CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28.  
Length=192

 Score = 165 bits (420),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 70/222 (32%), Positives = 94/222 (42%), Gaps = 36/222 (16%)

Query  215  NVIAQTKGGDPNNVVALGGHTDSVEAGPGINDDGSGIISNLVVAKALTRFSV-KNAVRFC  273
            NVIA+  G  P+ VV L  H DSV  GPG +D+ SG+ + L +A+ L      K +VRF 
Sbjct  1    NVIAKLPGKAPDEVVLLSAHYDSVGTGPGADDNASGVAALLELARVLAAGQRPKRSVRFL  60

Query  274  FWTAEEFGLLGSNYYVNSLNATEQAKIRLYLNFDMIASPNYALMIYDGDGSAFNLTGPAG  333
            F+ AEE GLLGS+++  S       KIR  +N DMI S   AL+           +GP G
Sbjct  61   FFDAEEAGLLGSHHFAKS--HPPLKKIRAVINLDMIGSGGPALLF---------QSGPKG  109

Query  334  SAQIERLFEDYY-----TSIRKPFVPTEFNGRSDYQAFILNGIPAGGLFTGAEAIKTEEQ  388
            S+ +E+  +        T    PF      GRSD+  FI  GIP   L            
Sbjct  110  SSLLEKYLKAAAKPYGVTLAEDPFQERGGPGRSDHAPFIKAGIPGLDL------------  157

Query  389  AQLFGGQAGVALDANYHAKGDNMTNLNREAFLINSRATAFAV  430
                   A       YH   D + N++              V
Sbjct  158  -------AFTDFGYRYHTPADTIDNIDPGTLQRIGDLVLALV  192



Lambda      K        H        a         alpha
   0.316    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00020824

Length=717
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  64.8    5e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 64.8 bits (158),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (43%), Gaps = 27/188 (14%)

Query  224  HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  283
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  284  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  331
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  332  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  387
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  388  DEDVTTIL  395
            D D+   L
Sbjct  176  DSDIDLPL  183



Lambda      K        H        a         alpha
   0.319    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906559696


Query= TCONS_00026274

Length=430
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  65.2    2e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 65.2 bits (159),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (43%), Gaps = 27/188 (14%)

Query  224  HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  283
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  284  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  331
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  332  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  387
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  388  DEDVTTIL  395
            D D+   L
Sbjct  176  DSDIDLPL  183



Lambda      K        H        a         alpha
   0.319    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521459360


Query= TCONS_00020825

Length=719
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  64.8    5e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 64.8 bits (158),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (43%), Gaps = 27/188 (14%)

Query  224  HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  283
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  284  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  331
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  332  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  387
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  388  DEDVTTIL  395
            D D+   L
Sbjct  176  DSDIDLPL  183



Lambda      K        H        a         alpha
   0.319    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 909470000


Query= TCONS_00020826

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  64.0    8e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 64.0 bits (156),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (43%), Gaps = 27/188 (14%)

Query  224  HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  283
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  284  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  331
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  332  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  387
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  388  DEDVTTIL  395
            D D+   L
Sbjct  176  DSDIDLPL  183



Lambda      K        H        a         alpha
   0.320    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 706864444


Query= TCONS_00026275

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  64.8    4e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 64.8 bits (158),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (43%), Gaps = 27/188 (14%)

Query  241  HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  300
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  301  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  348
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  349  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  404
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  405  DEDVTTIL  412
            D D+   L
Sbjct  176  DSDIDLPL  183



Lambda      K        H        a         alpha
   0.320    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 706864444


Query= TCONS_00020827

Length=715
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  67.5    7e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 67.5 bits (165),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 61/270 (23%), Positives = 107/270 (40%), Gaps = 48/270 (18%)

Query  224  HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  283
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  284  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  331
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  332  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  387
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  388  DEDVTTIL---------------WDLKTCSQE---AAALSLHVKITQVITRVLNTVYSAN  429
            D D+   L                 L   S E          +K++++++++L ++ S  
Sbjct  176  DSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIR  235

Query  430  GKLGNAFLQGIRSILHEMSDLSRELEEVFA  459
              L    LQ   S + E   L R L+    
Sbjct  236  STLDQRDLQLKLSWVRE---LERALDNWRK  262



Lambda      K        H        a         alpha
   0.319    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 903649392


Query= TCONS_00026276

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  66.7    8e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 66.7 bits (163),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 61/270 (23%), Positives = 107/270 (40%), Gaps = 48/270 (18%)

Query  224  HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  283
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  284  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  331
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  332  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  387
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  388  DEDVTTIL---------------WDLKTCSQE---AAALSLHVKITQVITRVLNTVYSAN  429
            D D+   L                 L   S E          +K++++++++L ++ S  
Sbjct  176  DSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIR  235

Query  430  GKLGNAFLQGIRSILHEMSDLSRELEEVFA  459
              L    LQ   S + E   L R L+    
Sbjct  236  STLDQRDLQLKLSWVRE---LERALDNWRK  262



Lambda      K        H        a         alpha
   0.320    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00020829

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  62.5    6e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 62.5 bits (152),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (43%), Gaps = 27/188 (14%)

Query  90   HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  149
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  150  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  197
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  198  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  253
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  254  DEDVTTIL  261
            D D+   L
Sbjct  176  DSDIDLPL  183



Lambda      K        H        a         alpha
   0.322    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00020828

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  62.5    2e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 62.5 bits (152),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 61/270 (23%), Positives = 107/270 (40%), Gaps = 48/270 (18%)

Query  8    HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  67
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  68   SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  115
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  116  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  171
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  172  DEDVTTIL---------------WDLKTCSQE---AAALSLHVKITQVITRVLNTVYSAN  213
            D D+   L                 L   S E          +K++++++++L ++ S  
Sbjct  176  DSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIR  235

Query  214  GKLGNAFLQGIRSILHEMSDLSRELEEVFA  243
              L    LQ   S + E   L R L+    
Sbjct  236  STLDQRDLQLKLSWVRE---LERALDNWRK  262



Lambda      K        H        a         alpha
   0.324    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500176124


Query= TCONS_00026277

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  64.8    4e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 64.8 bits (158),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (43%), Gaps = 27/188 (14%)

Query  219  HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  278
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  279  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  326
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  327  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  382
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  383  DEDVTTIL  390
            D D+   L
Sbjct  176  DSDIDLPL  183



Lambda      K        H        a         alpha
   0.320    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684357832


Query= TCONS_00020833

Length=716
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  67.9    6e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 67.9 bits (166),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 61/270 (23%), Positives = 107/270 (40%), Gaps = 48/270 (18%)

Query  225  HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  284
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  285  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  332
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  333  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  388
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  389  DEDVTTIL---------------WDLKTCSQE---AAALSLHVKITQVITRVLNTVYSAN  430
            D D+   L                 L   S E          +K++++++++L ++ S  
Sbjct  176  DSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIR  235

Query  431  GKLGNAFLQGIRSILHEMSDLSRELEEVFA  460
              L    LQ   S + E   L R L+    
Sbjct  236  STLDQRDLQLKLSWVRE---LERALDNWRK  262



Lambda      K        H        a         alpha
   0.319    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905104544


Query= TCONS_00020832

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  64.8    4e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 64.8 bits (158),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (43%), Gaps = 27/188 (14%)

Query  225  HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  284
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  285  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  332
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  333  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  388
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  389  DEDVTTIL  396
            D D+   L
Sbjct  176  DSDIDLPL  183



Lambda      K        H        a         alpha
   0.320    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690414096


Query= TCONS_00020831

Length=720
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  65.2    4e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 65.2 bits (159),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (43%), Gaps = 27/188 (14%)

Query  225  HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  284
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  285  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  332
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  333  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  388
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  389  DEDVTTIL  396
            D D+   L
Sbjct  176  DSDIDLPL  183



Lambda      K        H        a         alpha
   0.319    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 910925152


Query= TCONS_00026278

Length=723
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  64.8    6e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 64.8 bits (158),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (43%), Gaps = 27/188 (14%)

Query  230  HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  289
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  290  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  337
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  338  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  393
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  394  DEDVTTIL  401
            D D+   L
Sbjct  176  DSDIDLPL  183



Lambda      K        H        a         alpha
   0.319    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 915290608


Query= TCONS_00020830

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  61.7    4e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 61.7 bits (150),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (43%), Gaps = 27/188 (14%)

Query  8    HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  67
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  68   SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  115
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  116  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  171
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  172  DEDVTTIL  179
            D D+   L
Sbjct  176  DSDIDLPL  183



Lambda      K        H        a         alpha
   0.324    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0745    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00020835

Length=735
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  67.9    5e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 67.9 bits (166),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 61/270 (23%), Positives = 107/270 (40%), Gaps = 48/270 (18%)

Query  242  HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  301
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  302  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  349
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  350  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  405
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  406  DEDVTTIL---------------WDLKTCSQE---AAALSLHVKITQVITRVLNTVYSAN  447
            D D+   L                 L   S E          +K++++++++L ++ S  
Sbjct  176  DSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIR  235

Query  448  GKLGNAFLQGIRSILHEMSDLSRELEEVFA  477
              L    LQ   S + E   L R L+    
Sbjct  236  STLDQRDLQLKLSWVRE---LERALDNWRK  262



Lambda      K        H        a         alpha
   0.319    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 932752432


Query= TCONS_00020834

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  61.7    4e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 61.7 bits (150),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (43%), Gaps = 27/188 (14%)

Query  8    HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  67
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  68   SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  115
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  116  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  171
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  172  DEDVTTIL  179
            D D+   L
Sbjct  176  DSDIDLPL  183



Lambda      K        H        a         alpha
   0.324    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00026279

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  64.8    3e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 64.8 bits (158),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (43%), Gaps = 27/188 (14%)

Query  225  HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  284
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  285  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  332
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  333  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  388
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  389  DEDVTTIL  396
            D D+   L
Sbjct  176  DSDIDLPL  183



Lambda      K        H        a         alpha
   0.320    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00020837

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  64.0    6e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 64.0 bits (156),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (43%), Gaps = 27/188 (14%)

Query  225  HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  284
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  285  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  332
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  333  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  388
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  389  DEDVTTIL  396
            D D+   L
Sbjct  176  DSDIDLPL  183



Lambda      K        H        a         alpha
   0.320    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00020836

Length=712
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  67.9    5e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 67.9 bits (166),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 61/270 (23%), Positives = 107/270 (40%), Gaps = 48/270 (18%)

Query  219  HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  278
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  279  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  326
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  327  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  382
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  383  DEDVTTIL---------------WDLKTCSQE---AAALSLHVKITQVITRVLNTVYSAN  424
            D D+   L                 L   S E          +K++++++++L ++ S  
Sbjct  176  DSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLSIR  235

Query  425  GKLGNAFLQGIRSILHEMSDLSRELEEVFA  454
              L    LQ   S + E   L R L+    
Sbjct  236  STLDQRDLQLKLSWVRE---LERALDNWRK  262



Lambda      K        H        a         alpha
   0.319    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 912895010


Query= TCONS_00026280

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  64.8    3e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 64.8 bits (158),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (43%), Gaps = 27/188 (14%)

Query  242  HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  301
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  302  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  349
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  350  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  405
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  406  DEDVTTIL  413
            D D+   L
Sbjct  176  DSDIDLPL  183



Lambda      K        H        a         alpha
   0.320    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00026281

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  63.3    1e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 63.3 bits (154),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (43%), Gaps = 27/188 (14%)

Query  90   HFGHLYQPFDEEDFTRNLDEFYCNASAKVQESRLWYVQFLVVLAFGEALLAPVRRASNTA  149
            +F   +       F R+  E + + S       L       +LA G AL +    A +++
Sbjct  7    NFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLL-----AILALG-ALFSESPTARSSS  60

Query  150  SWT-------KYFSRAMSLL-----PDTTALWQDPLLAIEVLALIALYLHSVDMRDSAYC  197
            S T        +F RA+ L+       +++LW      ++ L L+ LY      R   + 
Sbjct  61   SLTDEAADGIHFFLRALILIHEDFSSPSSSLW-----ILQALLLLELYELGTGDRKLHWR  115

Query  198  YIGHAMRMALVEGLHR----ALPVEQLGEKRVERCTKIWWTVYILDRKFSSLIGSPTSVN  253
            Y G A+R+A   GLHR      P  +L  +  E   +++W  + LDR  S ++G P  ++
Sbjct  116  YHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLS  175

Query  254  DEDVTTIL  261
            D D+   L
Sbjct  176  DSDIDLPL  183



Lambda      K        H        a         alpha
   0.321    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 736753004


Query= TCONS_00020838

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00020840

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461278 pfam04366, Ysc84, Las17-binding protein actin regulato...  186     9e-59


>CDD:461278 pfam04366, Ysc84, Las17-binding protein actin regulator.  Ysc84 
is a family of Las17-binding proteins found in metazoa. Together, 
Las17 and Ysc84 are essential for proper polymerization 
of actin; Ysc84 is able to bind to and stabilize the actin 
dimer presented by Las17 and thereby promote polymerization. 
An active actin cytoskeleton is necessary for adequate 
endocytosis. (pfam00018), or a FYVE zinc finger (pfam01363).
Length=127

 Score = 186 bits (475),  Expect = 9e-59, Method: Composition-based stats.
 Identities = 61/128 (48%), Positives = 83/128 (65%), Gaps = 3/128 (2%)

Query  191  HTAGVGFLAGIDIYDCVMVINTYEALEAFT-KVRVTLGSEISVAAGPVGMGGVLESEVHK  249
               G+GF  G++I DCV+V+NT EALEAFT   RVTLG ++SVAAGPVG G   ++   K
Sbjct  1    GGGGLGFQIGVEITDCVLVLNTDEALEAFTSGGRVTLGGDVSVAAGPVGRGAEADATDAK  60

Query  250  RQAPIWSYVKSRGFYAGAQIDGTILIERNDENERFYGRK-VTVKEIMAAHVRTENASVRM  308
              API+SY KS+G +AG  ++G+++ ER D N  FYGR+ VT ++I+A  V       R 
Sbjct  61   LGAPIYSYSKSKGLFAGVSLEGSVISERKDANAAFYGRRGVTARDILAGKVPP-PPEARP  119

Query  309  LMHTLHSA  316
            L   L +A
Sbjct  120  LYEALKAA  127



Lambda      K        H        a         alpha
   0.314    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00026282

Length=263
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  163     2e-50
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  95.8    9e-25


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 163 bits (416),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 75/263 (29%), Positives = 111/263 (42%), Gaps = 47/263 (18%)

Query  14   SSIG----KKLREQGAHLAILYAPFEAARR-EELLESGYGGGSDAIRTYECDITAPSSVE  68
            S IG    + L E+GA + +       A+R EEL E     G+  +    CD+T    VE
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEEL---GAAVL---PCDVTDEEQVE  59

Query  69   SAFHALEREMIRASSSTQSDVVFPSI--LINTAGYVSLSDMEM--TPPEETMQHLTTNIF  124
            +   A   +             F  +  L+N AG+          T  E+  + L  N++
Sbjct  60   ALVAAAVEK-------------FGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLY  106

Query  125  GPMLCSQAFARLYFAASKTAEASANPSPPGRIVNIASQAAHVALPRHGAYCASKAA----  180
               L ++A   L                 G IVN++S  A   +P + AY A+KAA    
Sbjct  107  SLFLLAKAALPL-------------MKEGGSIVNLSSIGAERVVPNYNAYGAAKAALEAL  153

Query  181  --FMASEWGGQGITANSVSPTVVWTALGKKAWGEDSVREAFLKTIPSGRFVLPEEVADAV  238
              ++A E G +GI  N++SP  + T       G D +  A     P GR   PEEVA+A 
Sbjct  154  TRYLAVELGPRGIRVNAISPGPIKTLAASGIPGFDELLAAAEARAPLGRLGTPEEVANAA  213

Query  239  VFLCQDSSGMVNGADIRVDGGFT  261
             FL  D +  + G  + VDGG+T
Sbjct  214  AFLASDLASYITGQVLYVDGGYT  236


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 95.8 bits (239),  Expect = 9e-25, Method: Composition-based stats.
 Identities = 56/210 (27%), Positives = 83/210 (40%), Gaps = 37/210 (18%)

Query  10   GGLGSSIGKKLREQGAHLAILYAPFEAARREELLESGY---GGGSDAIRTYECDITAPSS  66
             G+G +I K+L ++GA + +        R EE LE+     G         + D+T  + 
Sbjct  10   SGIGRAIAKRLAKEGAKVVL------VDRSEEKLEAVAKELGALGGKALFIQGDVTDRAQ  63

Query  67   VESAFHALEREMIRASSSTQSDVVFPSILINTAGYVSLSDMEMTPPEETMQHLTTNIFGP  126
            V++        + R       D     IL+N AG   L        E+  + +  N+ G 
Sbjct  64   VKALVEQAVERLGRL------D-----ILVNNAGITGLGPFSELSDEDWERVIDVNLTGV  112

Query  127  MLCSQAFARLYFAASKTAEASANPSPPGRIVNIASQAAHVALPRHGAYCASKAAF-----  181
               ++A        S            GRIVNI+S A  V  P   AY ASKAA      
Sbjct  113  FNLTRAVLPAMIKGSG-----------GRIVNISSVAGLVPYPGGSAYSASKAAVIGFTR  161

Query  182  -MASEWGGQGITANSVSPTVVWTALGKKAW  210
             +A E    GI  N+V+P  V T + K+  
Sbjct  162  SLALELAPHGIRVNAVAPGGVDTDMTKELR  191



Lambda      K        H        a         alpha
   0.316    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 290477132


Query= TCONS_00020841

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461278 pfam04366, Ysc84, Las17-binding protein actin regulato...  188     3e-59


>CDD:461278 pfam04366, Ysc84, Las17-binding protein actin regulator.  Ysc84 
is a family of Las17-binding proteins found in metazoa. Together, 
Las17 and Ysc84 are essential for proper polymerization 
of actin; Ysc84 is able to bind to and stabilize the actin 
dimer presented by Las17 and thereby promote polymerization. 
An active actin cytoskeleton is necessary for adequate 
endocytosis. (pfam00018), or a FYVE zinc finger (pfam01363).
Length=127

 Score = 188 bits (480),  Expect = 3e-59, Method: Composition-based stats.
 Identities = 61/128 (48%), Positives = 83/128 (65%), Gaps = 3/128 (2%)

Query  191  HTAGVGFLAGIDIYDCVMVINTYEALEAFT-KVRVTLGSEISVAAGPVGMGGVLESEVHK  249
               G+GF  G++I DCV+V+NT EALEAFT   RVTLG ++SVAAGPVG G   ++   K
Sbjct  1    GGGGLGFQIGVEITDCVLVLNTDEALEAFTSGGRVTLGGDVSVAAGPVGRGAEADATDAK  60

Query  250  RQAPIWSYVKSRGFYAGAQIDGTILIERNDENERFYGRK-VTVKEIMAAHVRTENASVRM  308
              API+SY KS+G +AG  ++G+++ ER D N  FYGR+ VT ++I+A  V       R 
Sbjct  61   LGAPIYSYSKSKGLFAGVSLEGSVISERKDANAAFYGRRGVTARDILAGKVPP-PPEARP  119

Query  309  LMHTLHSA  316
            L   L +A
Sbjct  120  LYEALKAA  127



Lambda      K        H        a         alpha
   0.314    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00020843

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  83.4    7e-21
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  80.9    1e-19


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 83.4 bits (207),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 31/175 (18%)

Query  10   GGLGSSIGKKLREQGAHLAILYAPFEAARREELLESGY---GGGSDAIRTYECDITAPSS  66
             G+G +I K+L ++GA + +        R EE LE+     G         + D+T  + 
Sbjct  10   SGIGRAIAKRLAKEGAKVVL------VDRSEEKLEAVAKELGALGGKALFIQGDVTDRAQ  63

Query  67   VESAFHALEREMIRASSSTQSDVVFPSILINTAGYVSLSDMEMTPPEETMQHLTTNIFGP  126
            V++        + R       D     IL+N AG   L        E+  + +  N+ G 
Sbjct  64   VKALVEQAVERLGRL------D-----ILVNNAGITGLGPFSELSDEDWERVIDVNLTGV  112

Query  127  MLCSQAFARLYFAASKTAEASANPSPPGRIVNIASQAAHVALPRHGAYCASKAAL  181
               ++A        S            GRIVNI+S A  V  P   AY ASKAA+
Sbjct  113  FNLTRAVLPAMIKGSG-----------GRIVNISSVAGLVPYPGGSAYSASKAAV  156


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 80.9 bits (201),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 46/177 (26%), Positives = 70/177 (40%), Gaps = 41/177 (23%)

Query  14   SSIG----KKLREQGAHLAILYAPFEAARR-EELLESGYGGGSDAIRTYECDITAPSSVE  68
            S IG    + L E+GA + +       A+R EEL E     G+  +    CD+T    VE
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEEL---GAAVL---PCDVTDEEQVE  59

Query  69   SAFHALEREMIRASSSTQSDVVFPSI--LINTAGYVSLSDMEM--TPPEETMQHLTTNIF  124
            +   A   +             F  +  L+N AG+          T  E+  + L  N++
Sbjct  60   ALVAAAVEK-------------FGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLY  106

Query  125  GPMLCSQAFARLYFAASKTAEASANPSPPGRIVNIASQAAHVALPRHGAYCASKAAL  181
               L ++A   L                 G IVN++S  A   +P + AY A+KAAL
Sbjct  107  SLFLLAKAALPL-------------MKEGGSIVNLSSIGAERVVPNYNAYGAAKAAL  150



Lambda      K        H        a         alpha
   0.316    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00020842

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  83.4    7e-21
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  80.9    1e-19


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 83.4 bits (207),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 31/175 (18%)

Query  10   GGLGSSIGKKLREQGAHLAILYAPFEAARREELLESGY---GGGSDAIRTYECDITAPSS  66
             G+G +I K+L ++GA + +        R EE LE+     G         + D+T  + 
Sbjct  10   SGIGRAIAKRLAKEGAKVVL------VDRSEEKLEAVAKELGALGGKALFIQGDVTDRAQ  63

Query  67   VESAFHALEREMIRASSSTQSDVVFPSILINTAGYVSLSDMEMTPPEETMQHLTTNIFGP  126
            V++        + R       D     IL+N AG   L        E+  + +  N+ G 
Sbjct  64   VKALVEQAVERLGRL------D-----ILVNNAGITGLGPFSELSDEDWERVIDVNLTGV  112

Query  127  MLCSQAFARLYFAASKTAEASANPSPPGRIVNIASQAAHVALPRHGAYCASKAAL  181
               ++A        S            GRIVNI+S A  V  P   AY ASKAA+
Sbjct  113  FNLTRAVLPAMIKGSG-----------GRIVNISSVAGLVPYPGGSAYSASKAAV  156


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 80.9 bits (201),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 46/177 (26%), Positives = 70/177 (40%), Gaps = 41/177 (23%)

Query  14   SSIG----KKLREQGAHLAILYAPFEAARR-EELLESGYGGGSDAIRTYECDITAPSSVE  68
            S IG    + L E+GA + +       A+R EEL E     G+  +    CD+T    VE
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEEL---GAAVL---PCDVTDEEQVE  59

Query  69   SAFHALEREMIRASSSTQSDVVFPSI--LINTAGYVSLSDMEM--TPPEETMQHLTTNIF  124
            +   A   +             F  +  L+N AG+          T  E+  + L  N++
Sbjct  60   ALVAAAVEK-------------FGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLY  106

Query  125  GPMLCSQAFARLYFAASKTAEASANPSPPGRIVNIASQAAHVALPRHGAYCASKAAL  181
               L ++A   L                 G IVN++S  A   +P + AY A+KAAL
Sbjct  107  SLFLLAKAALPL-------------MKEGGSIVNLSSIGAERVVPNYNAYGAAKAAL  150



Lambda      K        H        a         alpha
   0.316    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00026283

Length=155
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) fa...  62.5    5e-14


>CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.  
This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=116

 Score = 62.5 bits (152),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 32/115 (28%), Positives = 51/115 (44%), Gaps = 4/115 (3%)

Query  20   LQHHFTELRSQGRPETSFALDLTAFLDPSITLYTAWEGDSLLGCGALKQL--SPTHGEIK  77
            L    +E   +  P+    L      D S   + A E   L+G  +L  +   P  GEI+
Sbjct  4    LYELLSEEFPEPWPDEPLDLLEDWDEDASEGFFVAEEDGELVGFASLSIIDDEPPVGEIE  63

Query  78   SMRTAPGHLRKGVAKTILKHIVAEARERKYQSLSLETGTDGRFESARRLYLGMGF  132
             +  AP +  KG+   +L+ ++  ARER  + + LE   D    +A  LY  +GF
Sbjct  64   GLAVAPEYRGKGIGTALLQALLEWARERGCERIFLEVAADN--LAAIALYEKLGF  116



Lambda      K        H        a         alpha
   0.321    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00020845

Length=155
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) fa...  62.5    5e-14


>CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.  
This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=116

 Score = 62.5 bits (152),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 32/115 (28%), Positives = 51/115 (44%), Gaps = 4/115 (3%)

Query  20   LQHHFTELRSQGRPETSFALDLTAFLDPSITLYTAWEGDSLLGCGALKQL--SPTHGEIK  77
            L    +E   +  P+    L      D S   + A E   L+G  +L  +   P  GEI+
Sbjct  4    LYELLSEEFPEPWPDEPLDLLEDWDEDASEGFFVAEEDGELVGFASLSIIDDEPPVGEIE  63

Query  78   SMRTAPGHLRKGVAKTILKHIVAEARERKYQSLSLETGTDGRFESARRLYLGMGF  132
             +  AP +  KG+   +L+ ++  ARER  + + LE   D    +A  LY  +GF
Sbjct  64   GLAVAPEYRGKGIGTALLQALLEWARERGCERIFLEVAADN--LAAIALYEKLGF  116



Lambda      K        H        a         alpha
   0.321    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00026284

Length=155
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) fa...  62.5    5e-14


>CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.  
This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=116

 Score = 62.5 bits (152),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 32/115 (28%), Positives = 51/115 (44%), Gaps = 4/115 (3%)

Query  20   LQHHFTELRSQGRPETSFALDLTAFLDPSITLYTAWEGDSLLGCGALKQL--SPTHGEIK  77
            L    +E   +  P+    L      D S   + A E   L+G  +L  +   P  GEI+
Sbjct  4    LYELLSEEFPEPWPDEPLDLLEDWDEDASEGFFVAEEDGELVGFASLSIIDDEPPVGEIE  63

Query  78   SMRTAPGHLRKGVAKTILKHIVAEARERKYQSLSLETGTDGRFESARRLYLGMGF  132
             +  AP +  KG+   +L+ ++  ARER  + + LE   D    +A  LY  +GF
Sbjct  64   GLAVAPEYRGKGIGTALLQALLEWARERGCERIFLEVAADN--LAAIALYEKLGF  116



Lambda      K        H        a         alpha
   0.321    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00020846

Length=336


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00026285

Length=355


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00020847

Length=355


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00020848

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:284814 pfam07476, MAAL_C, Methylaspartate ammonia-lyase C-ter...  437     5e-156
CDD:398626 pfam05034, MAAL_N, Methylaspartate ammonia-lyase N-ter...  162     3e-49 


>CDD:284814 pfam07476, MAAL_C, Methylaspartate ammonia-lyase C-terminus. 
 Methylaspartate ammonia-lyase EC:4.3.1.2 catalyzes the second 
step of fermentation of glutamate. It is a homodimer. This 
family represents the C-terminal region of Methylaspartate 
ammonia-lyase and contains a TIM barrel fold similar to the 
pfam01188. This family represents the catalytic domain and 
contains a metal binding site.
Length=247

 Score = 437 bits (1127),  Expect = 5e-156, Method: Composition-based stats.
 Identities = 136/247 (55%), Positives = 170/247 (69%), Gaps = 1/247 (0%)

Query  148  IADRPVDILASCHRNDALQLDRMIMKKAPMLPHASFVHASDIGPHGMVLMDYVDTVARRI  207
            +A  PV I   C  +  +  D+MI+K   +LPHA   +   +G  G  L+DYV  +++RI
Sbjct  1    LAPEPVPIFGQCGDDRYINADKMIIKGVDVLPHALINNVEKLGEKGEKLLDYVAWLSQRI  60

Query  208  RQRAPPGYHPRLHFDVYGTLGDVFP-ETTRLADFLGRLRQRARPYALLIESPIIAPSKPA  266
            R    P Y P LH DVYGT+G  F  +  R+AD+L  L + A PY L IE P+ A SK A
Sbjct  61   RTLGSPDYRPILHIDVYGTIGLAFDNDLDRMADYLATLEEAAAPYPLRIEGPMDAGSKEA  120

Query  267  QIQRLAALRACLKRKSIDVRIVADEWCNTLPDIRDFADADAVDYVQIKMPDLGGVDQSID  326
            QI+RLAALR  L R+ I V IVADEWCNTL DIR+F DA A D VQIK PDLGG++ +I+
Sbjct  121  QIERLAALREKLDRRGIGVEIVADEWCNTLEDIREFVDAGAADMVQIKTPDLGGINNTIE  180

Query  327  AVLYCQGKGIGCCLGGSANETDVSARITAQVALATRPDFLLSKPGIGADEGLMILTNEML  386
            AVLYC+ KG+G  LGGS NETD+SAR+   VALATRPD +L+KPG+G DEGLMI+TNEM 
Sbjct  181  AVLYCKEKGVGAYLGGSCNETDISARVCVHVALATRPDQMLAKPGMGVDEGLMIVTNEMN  240

Query  387  RGIALAK  393
            R +AL K
Sbjct  241  RTLALLK  247


>CDD:398626 pfam05034, MAAL_N, Methylaspartate ammonia-lyase N-terminus. 
 Methylaspartate ammonia-lyase EC:4.3.1.2 catalyzes the second 
step of fermentation of glutamate. It is a homodimer. This 
family represents the N-terminal region of Methylaspartate 
ammonia-lyase. This domain is structurally related to pfam03952. 
This domain is associated with the catalytic domain pfam07476.
Length=160

 Score = 162 bits (412),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 67/160 (42%), Positives = 90/160 (56%), Gaps = 18/160 (11%)

Query  1    MKPTDVQFVIGLSGYFVKDLEAVRRSPAYDPLRDDIPPCTPGFRSVVQAGQVISIILHLP  60
            MK  DV    GLSG++  D  A++    +D    +  P TPGF SV QAG+ IS++L L 
Sbjct  1    MKIEDVLATPGLSGFYFDDQRAIKAGAKHDGFAYEGEPVTPGFTSVRQAGESISVMLVLE  60

Query  61   CGGIAVGDSVDVIFSGAASREP-----------------WLLSCDLSHFRHNAERVDLPW  103
             G +A GD   V +SGA  R+P                 WL+  DL+ FR NAE +D  W
Sbjct  61   DGQVAYGDCAAVQYSGAGGRDPLFLAEEFIPVIEGEVAPWLVGRDLTSFRENAEELDSLW  120

Query  104  TELHGRRLHSAIRYGLTQALLAATALAQRRTIAEVICHEW  143
                G+RLH+A+RYG++QALL A A A R T+AEV+  E+
Sbjct  121  PV-DGKRLHTAVRYGVSQALLDAVAKAARTTMAEVVADEY  159



Lambda      K        H        a         alpha
   0.325    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 481536020


Query= TCONS_00020849

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00026286

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00020850

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00026287

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00020851

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00020852

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00026288

Length=266


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00020853

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00026289

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00026291

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.130    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00020855

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00020854

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.130    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00026292

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.132    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00020856

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.130    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00026293

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460266 pfam01613, Flavin_Reduct, Flavin reductase like domain...  56.1    4e-11


>CDD:460266 pfam01613, Flavin_Reduct, Flavin reductase like domain.  This 
is a flavin reductase family consisting of enzymes known to 
be flavin reductases as well as various oxidoreductase and 
monooxygenase components. VlmR is a flavin reductase that functions 
in a two-component enzyme system to provide isobutylamine 
N-hydroxylase with reduced flavin and may be involved 
in the synthesis of valanimycin. SnaC is a flavin reductase 
that provides reduced flavin for the oxidation of pristinamycin 
IIB to pristinamycin IIA as catalyzed by SnaA, SnaB heterodimer. 
This flavin reductase region characterized by enzymes 
of the family is present in the C-terminus of potential FMN 
proteins from Synechocystis sp. suggesting it is a flavin 
reductase domain.
Length=149

 Score = 56.1 bits (136),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 35/136 (26%), Positives = 52/136 (38%), Gaps = 28/136 (21%)

Query  14   GTPVVLATTVNKDGTPNIAPISSAWWLG---NRAVLGLGRSSQTIANIIRTRQCVLNLPG  70
             T V + TT +  G PN   +SS   +       ++ + RSS T   I  + + V+N+  
Sbjct  5    PTGVAVVTT-DDGGEPNGMTVSSFTSVSLDPPLVLVSINRSSSTHDAIEASGEFVVNVLA  63

Query  71   DDMVQCVNALARTTGAKDVPASKTQRGYRDEKDKFGIAGLTPESSHLVQPPRIQECPVQM  130
            +D       LAR                R  +DKF  AG+T      V  P ++     +
Sbjct  64   EDQE----ELARRFAG------------RSGRDKF--AGITWVEGK-VGAPLLKGALAAL  104

Query  131  EAEV-----AGTHELF  141
            E  V      G H LF
Sbjct  105  ECRVVDTVDVGDHTLF  120



Lambda      K        H        a         alpha
   0.318    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00020857

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460266 pfam01613, Flavin_Reduct, Flavin reductase like domain...  56.1    4e-11


>CDD:460266 pfam01613, Flavin_Reduct, Flavin reductase like domain.  This 
is a flavin reductase family consisting of enzymes known to 
be flavin reductases as well as various oxidoreductase and 
monooxygenase components. VlmR is a flavin reductase that functions 
in a two-component enzyme system to provide isobutylamine 
N-hydroxylase with reduced flavin and may be involved 
in the synthesis of valanimycin. SnaC is a flavin reductase 
that provides reduced flavin for the oxidation of pristinamycin 
IIB to pristinamycin IIA as catalyzed by SnaA, SnaB heterodimer. 
This flavin reductase region characterized by enzymes 
of the family is present in the C-terminus of potential FMN 
proteins from Synechocystis sp. suggesting it is a flavin 
reductase domain.
Length=149

 Score = 56.1 bits (136),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 35/136 (26%), Positives = 52/136 (38%), Gaps = 28/136 (21%)

Query  14   GTPVVLATTVNKDGTPNIAPISSAWWLG---NRAVLGLGRSSQTIANIIRTRQCVLNLPG  70
             T V + TT +  G PN   +SS   +       ++ + RSS T   I  + + V+N+  
Sbjct  5    PTGVAVVTT-DDGGEPNGMTVSSFTSVSLDPPLVLVSINRSSSTHDAIEASGEFVVNVLA  63

Query  71   DDMVQCVNALARTTGAKDVPASKTQRGYRDEKDKFGIAGLTPESSHLVQPPRIQECPVQM  130
            +D       LAR                R  +DKF  AG+T      V  P ++     +
Sbjct  64   EDQE----ELARRFAG------------RSGRDKF--AGITWVEGK-VGAPLLKGALAAL  104

Query  131  EAEV-----AGTHELF  141
            E  V      G H LF
Sbjct  105  ECRVVDTVDVGDHTLF  120



Lambda      K        H        a         alpha
   0.318    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0706    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00020859

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00020860

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00020861

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phospha...  77.8    1e-19


>CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored 
membrane family.  Some members of this family 
appear to be serine- threonine-rich membrane-anchored proteins, 
anchored by glycosyl-phosphatidylinositol. In A. fumigatus 
these proteins play a role in fungal cell wall organisation. 
In Lentinula edodes this family is involved in fruiting 
body formation, and may have a more general role in signalling 
in other organisms as it interacts with MAPK. The family 
is also found in archaea and bacteria.
Length=94

 Score = 77.8 bits (192),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 43/94 (46%), Gaps = 2/94 (2%)

Query  21   SPKKDQDVDLSEKTTIEWSSVSSDPSSFDIYLVKMNS-YPPVNKLVAENVKTSEGSYTID  79
            SP     VD     TI WS V +DP +  +YL    S  PP    +A  +  S GSYT  
Sbjct  1    SPSSGDVVDAGSPFTITWSDVPTDPGTVTLYLCNGPSNNPPPVATLASGIDNSGGSYTWT  60

Query  80   G-VSADNGSGYQINFVSRDPQNTGILAQSQQFKV  112
                   GSGYQI  VS    NTGI   S +F +
Sbjct  61   PPTDLPAGSGYQIQIVSETNANTGIYNYSPRFTI  94



Lambda      K        H        a         alpha
   0.300    0.115    0.295    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00020863

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phospha...  75.9    1e-18


>CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored 
membrane family.  Some members of this family 
appear to be serine- threonine-rich membrane-anchored proteins, 
anchored by glycosyl-phosphatidylinositol. In A. fumigatus 
these proteins play a role in fungal cell wall organisation. 
In Lentinula edodes this family is involved in fruiting 
body formation, and may have a more general role in signalling 
in other organisms as it interacts with MAPK. The family 
is also found in archaea and bacteria.
Length=94

 Score = 75.9 bits (187),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 43/94 (46%), Gaps = 2/94 (2%)

Query  21   SPKKDQDVDLSEKTTIEWSSVSSDPSSFDIYLVKMNS-YPPVNKLVAENVKTSEGSYTID  79
            SP     VD     TI WS V +DP +  +YL    S  PP    +A  +  S GSYT  
Sbjct  1    SPSSGDVVDAGSPFTITWSDVPTDPGTVTLYLCNGPSNNPPPVATLASGIDNSGGSYTWT  60

Query  80   G-VSADNGSGYQINFVSRDPQNTGILAQSQQFKV  112
                   GSGYQI  VS    NTGI   S +F +
Sbjct  61   PPTDLPAGSGYQIQIVSETNANTGIYNYSPRFTI  94



Lambda      K        H        a         alpha
   0.297    0.111    0.277    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00020862

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phospha...  77.8    1e-19


>CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored 
membrane family.  Some members of this family 
appear to be serine- threonine-rich membrane-anchored proteins, 
anchored by glycosyl-phosphatidylinositol. In A. fumigatus 
these proteins play a role in fungal cell wall organisation. 
In Lentinula edodes this family is involved in fruiting 
body formation, and may have a more general role in signalling 
in other organisms as it interacts with MAPK. The family 
is also found in archaea and bacteria.
Length=94

 Score = 77.8 bits (192),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 43/94 (46%), Gaps = 2/94 (2%)

Query  21   SPKKDQDVDLSEKTTIEWSSVSSDPSSFDIYLVKMNS-YPPVNKLVAENVKTSEGSYTID  79
            SP     VD     TI WS V +DP +  +YL    S  PP    +A  +  S GSYT  
Sbjct  1    SPSSGDVVDAGSPFTITWSDVPTDPGTVTLYLCNGPSNNPPPVATLASGIDNSGGSYTWT  60

Query  80   G-VSADNGSGYQINFVSRDPQNTGILAQSQQFKV  112
                   GSGYQI  VS    NTGI   S +F +
Sbjct  61   PPTDLPAGSGYQIQIVSETNANTGIYNYSPRFTI  94



Lambda      K        H        a         alpha
   0.300    0.115    0.295    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00020864

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phospha...  76.6    3e-19


>CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored 
membrane family.  Some members of this family 
appear to be serine- threonine-rich membrane-anchored proteins, 
anchored by glycosyl-phosphatidylinositol. In A. fumigatus 
these proteins play a role in fungal cell wall organisation. 
In Lentinula edodes this family is involved in fruiting 
body formation, and may have a more general role in signalling 
in other organisms as it interacts with MAPK. The family 
is also found in archaea and bacteria.
Length=94

 Score = 76.6 bits (189),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 43/94 (46%), Gaps = 2/94 (2%)

Query  21   SPKKDQDVDLSEKTTIEWSSVSSDPSSFDIYLVKMNS-YPPVNKLVAENVKTSEGSYTID  79
            SP     VD     TI WS V +DP +  +YL    S  PP    +A  +  S GSYT  
Sbjct  1    SPSSGDVVDAGSPFTITWSDVPTDPGTVTLYLCNGPSNNPPPVATLASGIDNSGGSYTWT  60

Query  80   G-VSADNGSGYQINFVSRDPQNTGILAQSQQFKV  112
                   GSGYQI  VS    NTGI   S +F +
Sbjct  61   PPTDLPAGSGYQIQIVSETNANTGIYNYSPRFTI  94



Lambda      K        H        a         alpha
   0.295    0.107    0.264    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00026295

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00026294

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phospha...  77.0    2e-19


>CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored 
membrane family.  Some members of this family 
appear to be serine- threonine-rich membrane-anchored proteins, 
anchored by glycosyl-phosphatidylinositol. In A. fumigatus 
these proteins play a role in fungal cell wall organisation. 
In Lentinula edodes this family is involved in fruiting 
body formation, and may have a more general role in signalling 
in other organisms as it interacts with MAPK. The family 
is also found in archaea and bacteria.
Length=94

 Score = 77.0 bits (190),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 43/94 (46%), Gaps = 2/94 (2%)

Query  21   SPKKDQDVDLSEKTTIEWSSVSSDPSSFDIYLVKMNS-YPPVNKLVAENVKTSEGSYTID  79
            SP     VD     TI WS V +DP +  +YL    S  PP    +A  +  S GSYT  
Sbjct  1    SPSSGDVVDAGSPFTITWSDVPTDPGTVTLYLCNGPSNNPPPVATLASGIDNSGGSYTWT  60

Query  80   G-VSADNGSGYQINFVSRDPQNTGILAQSQQFKV  112
                   GSGYQI  VS    NTGI   S +F +
Sbjct  61   PPTDLPAGSGYQIQIVSETNANTGIYNYSPRFTI  94



Lambda      K        H        a         alpha
   0.300    0.115    0.297    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00026297

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phospha...  77.0    2e-19


>CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored 
membrane family.  Some members of this family 
appear to be serine- threonine-rich membrane-anchored proteins, 
anchored by glycosyl-phosphatidylinositol. In A. fumigatus 
these proteins play a role in fungal cell wall organisation. 
In Lentinula edodes this family is involved in fruiting 
body formation, and may have a more general role in signalling 
in other organisms as it interacts with MAPK. The family 
is also found in archaea and bacteria.
Length=94

 Score = 77.0 bits (190),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 43/94 (46%), Gaps = 2/94 (2%)

Query  21   SPKKDQDVDLSEKTTIEWSSVSSDPSSFDIYLVKMNS-YPPVNKLVAENVKTSEGSYTID  79
            SP     VD     TI WS V +DP +  +YL    S  PP    +A  +  S GSYT  
Sbjct  1    SPSSGDVVDAGSPFTITWSDVPTDPGTVTLYLCNGPSNNPPPVATLASGIDNSGGSYTWT  60

Query  80   G-VSADNGSGYQINFVSRDPQNTGILAQSQQFKV  112
                   GSGYQI  VS    NTGI   S +F +
Sbjct  61   PPTDLPAGSGYQIQIVSETNANTGIYNYSPRFTI  94



Lambda      K        H        a         alpha
   0.300    0.115    0.298    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00026296

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00020865

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phospha...  77.0    2e-19


>CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored 
membrane family.  Some members of this family 
appear to be serine- threonine-rich membrane-anchored proteins, 
anchored by glycosyl-phosphatidylinositol. In A. fumigatus 
these proteins play a role in fungal cell wall organisation. 
In Lentinula edodes this family is involved in fruiting 
body formation, and may have a more general role in signalling 
in other organisms as it interacts with MAPK. The family 
is also found in archaea and bacteria.
Length=94

 Score = 77.0 bits (190),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 43/94 (46%), Gaps = 2/94 (2%)

Query  21   SPKKDQDVDLSEKTTIEWSSVSSDPSSFDIYLVKMNS-YPPVNKLVAENVKTSEGSYTID  79
            SP     VD     TI WS V +DP +  +YL    S  PP    +A  +  S GSYT  
Sbjct  1    SPSSGDVVDAGSPFTITWSDVPTDPGTVTLYLCNGPSNNPPPVATLASGIDNSGGSYTWT  60

Query  80   G-VSADNGSGYQINFVSRDPQNTGILAQSQQFKV  112
                   GSGYQI  VS    NTGI   S +F +
Sbjct  61   PPTDLPAGSGYQIQIVSETNANTGIYNYSPRFTI  94



Lambda      K        H        a         alpha
   0.300    0.115    0.297    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00026298

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phospha...  67.4    7e-16


>CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored 
membrane family.  Some members of this family 
appear to be serine- threonine-rich membrane-anchored proteins, 
anchored by glycosyl-phosphatidylinositol. In A. fumigatus 
these proteins play a role in fungal cell wall organisation. 
In Lentinula edodes this family is involved in fruiting 
body formation, and may have a more general role in signalling 
in other organisms as it interacts with MAPK. The family 
is also found in archaea and bacteria.
Length=94

 Score = 67.4 bits (165),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 30/80 (38%), Positives = 38/80 (48%), Gaps = 2/80 (3%)

Query  27   DVEWSSVSSDPSSFDIYLVKMNS-YPPVNKLVAENVKTSEGSYTIDG-VSADNGSGYQIN  84
             + WS V +DP +  +YL    S  PP    +A  +  S GSYT         GSGYQI 
Sbjct  15   TITWSDVPTDPGTVTLYLCNGPSNNPPPVATLASGIDNSGGSYTWTPPTDLPAGSGYQIQ  74

Query  85   FVSRDPQNTGILAQSQQFKV  104
             VS    NTGI   S +F +
Sbjct  75   IVSETNANTGIYNYSPRFTI  94



Lambda      K        H        a         alpha
   0.300    0.114    0.295    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00026299

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phospha...  65.8    4e-15


>CDD:463051 pfam10342, GPI-anchored, Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored 
membrane family.  Some members of this family 
appear to be serine- threonine-rich membrane-anchored proteins, 
anchored by glycosyl-phosphatidylinositol. In A. fumigatus 
these proteins play a role in fungal cell wall organisation. 
In Lentinula edodes this family is involved in fruiting 
body formation, and may have a more general role in signalling 
in other organisms as it interacts with MAPK. The family 
is also found in archaea and bacteria.
Length=94

 Score = 65.8 bits (161),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 27/72 (38%), Positives = 34/72 (47%), Gaps = 2/72 (3%)

Query  15  SDPSSFDIYLVKMNS-YPPVNKLVAENVKTSEGSYTIDG-VSADNGSGYQINFVSRDPQN  72
           +DP +  +YL    S  PP    +A  +  S GSYT         GSGYQI  VS    N
Sbjct  23  TDPGTVTLYLCNGPSNNPPPVATLASGIDNSGGSYTWTPPTDLPAGSGYQIQIVSETNAN  82

Query  73  TGILAQSQQFKV  84
           TGI   S +F +
Sbjct  83  TGIYNYSPRFTI  94



Lambda      K        H        a         alpha
   0.295    0.108    0.270    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00020866

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  155     1e-44


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 155 bits (393),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 70/313 (22%), Positives = 121/313 (39%), Gaps = 51/313 (16%)

Query  65   GTWRGTIDHLDYIQGMGFDAVMISPVVKNVEGRVSYGEAYHGYWPEDIYSLNPHFGTKQD  124
            G  +G I+ LDY++ +G  A+ +SP+           +A HGY   D Y ++PH+GT +D
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLSPIFD-------SPQADHGYDIADYYKIDPHYGTMED  53

Query  125  LLDLSAEVHKRGMFLMVDTVINNMAYITNGSDPATHIKYSTLTPFDSSSYYHPYCKIE--  182
              +L ++ H+RG+ +++D V+N+ +        +     S+        Y+         
Sbjct  54   FKELISKAHERGIKVILDLVVNHTSDEHAWFQES----RSSKDNPYRDYYFWRPGGGPIP  109

Query  183  --DWNNF---TQAQWCQTGD------NVVALPDLYTEHPDVQSILEKWAQDMISTYSIDG  231
              +W ++   +   + + G        V   PDL  E+P+V++ L    +       IDG
Sbjct  110  PNNWRSYFGGSAWTYDEKGQEYYLHLFVAGQPDLNWENPEVRNELYDVVR-FWLDKGIDG  168

Query  232  LRIDAAKHV----------NTGFLANFGKAL-------SDTFMTGEVYQQ--EVDIICDY  272
             RID  KH+          N  F   F +A+        D    GEV+    E   +   
Sbjct  169  FRIDVVKHISKVPGLPFENNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDGEWARVYTT  228

Query  273  KNNY-ITSVPNFPVYF--SVIEAFTKGNTSSLANIVEVMKNS---CHDVTS-MTTFTESH  325
            +    +    NFP                 S   + E++ +      D      TF  +H
Sbjct  229  EARMELEMGFNFPHNDVALKPFIKWDLAPISARKLKEMITDWLDALPDTNGWNFTFLGNH  288

Query  326  DVNRFANMTSDMA  338
            D  RF +   D  
Sbjct  289  DQPRFLSRFGDDR  301



Lambda      K        H        a         alpha
   0.319    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00020867

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  155     1e-44


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 155 bits (393),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 70/313 (22%), Positives = 121/313 (39%), Gaps = 51/313 (16%)

Query  65   GTWRGTIDHLDYIQGMGFDAVMISPVVKNVEGRVSYGEAYHGYWPEDIYSLNPHFGTKQD  124
            G  +G I+ LDY++ +G  A+ +SP+           +A HGY   D Y ++PH+GT +D
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLSPIFD-------SPQADHGYDIADYYKIDPHYGTMED  53

Query  125  LLDLSAEVHKRGMFLMVDTVINNMAYITNGSDPATHIKYSTLTPFDSSSYYHPYCKIE--  182
              +L ++ H+RG+ +++D V+N+ +        +     S+        Y+         
Sbjct  54   FKELISKAHERGIKVILDLVVNHTSDEHAWFQES----RSSKDNPYRDYYFWRPGGGPIP  109

Query  183  --DWNNF---TQAQWCQTGD------NVVALPDLYTEHPDVQSILEKWAQDMISTYSIDG  231
              +W ++   +   + + G        V   PDL  E+P+V++ L    +       IDG
Sbjct  110  PNNWRSYFGGSAWTYDEKGQEYYLHLFVAGQPDLNWENPEVRNELYDVVR-FWLDKGIDG  168

Query  232  LRIDAAKHV----------NTGFLANFGKAL-------SDTFMTGEVYQQ--EVDIICDY  272
             RID  KH+          N  F   F +A+        D    GEV+    E   +   
Sbjct  169  FRIDVVKHISKVPGLPFENNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDGEWARVYTT  228

Query  273  KNNY-ITSVPNFPVYF--SVIEAFTKGNTSSLANIVEVMKNS---CHDVTS-MTTFTESH  325
            +    +    NFP                 S   + E++ +      D      TF  +H
Sbjct  229  EARMELEMGFNFPHNDVALKPFIKWDLAPISARKLKEMITDWLDALPDTNGWNFTFLGNH  288

Query  326  DVNRFANMTSDMA  338
            D  RF +   D  
Sbjct  289  DQPRFLSRFGDDR  301



Lambda      K        H        a         alpha
   0.319    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00020868

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  155     1e-44


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 155 bits (393),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 70/313 (22%), Positives = 121/313 (39%), Gaps = 51/313 (16%)

Query  65   GTWRGTIDHLDYIQGMGFDAVMISPVVKNVEGRVSYGEAYHGYWPEDIYSLNPHFGTKQD  124
            G  +G I+ LDY++ +G  A+ +SP+           +A HGY   D Y ++PH+GT +D
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLSPIFD-------SPQADHGYDIADYYKIDPHYGTMED  53

Query  125  LLDLSAEVHKRGMFLMVDTVINNMAYITNGSDPATHIKYSTLTPFDSSSYYHPYCKIE--  182
              +L ++ H+RG+ +++D V+N+ +        +     S+        Y+         
Sbjct  54   FKELISKAHERGIKVILDLVVNHTSDEHAWFQES----RSSKDNPYRDYYFWRPGGGPIP  109

Query  183  --DWNNF---TQAQWCQTGD------NVVALPDLYTEHPDVQSILEKWAQDMISTYSIDG  231
              +W ++   +   + + G        V   PDL  E+P+V++ L    +       IDG
Sbjct  110  PNNWRSYFGGSAWTYDEKGQEYYLHLFVAGQPDLNWENPEVRNELYDVVR-FWLDKGIDG  168

Query  232  LRIDAAKHV----------NTGFLANFGKAL-------SDTFMTGEVYQQ--EVDIICDY  272
             RID  KH+          N  F   F +A+        D    GEV+    E   +   
Sbjct  169  FRIDVVKHISKVPGLPFENNGPFWHEFTQAMNETVFGYKDVMTVGEVFHGDGEWARVYTT  228

Query  273  KNNY-ITSVPNFPVYF--SVIEAFTKGNTSSLANIVEVMKNS---CHDVTS-MTTFTESH  325
            +    +    NFP                 S   + E++ +      D      TF  +H
Sbjct  229  EARMELEMGFNFPHNDVALKPFIKWDLAPISARKLKEMITDWLDALPDTNGWNFTFLGNH  288

Query  326  DVNRFANMTSDMA  338
            D  RF +   D  
Sbjct  289  DQPRFLSRFGDDR  301



Lambda      K        H        a         alpha
   0.319    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00026301

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  121     7e-33


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 121 bits (305),  Expect = 7e-33, Method: Composition-based stats.
 Identities = 40/163 (25%), Positives = 74/163 (45%), Gaps = 26/163 (16%)

Query  65   GTWRGTIDHLDYIQGMGFDAVMISPVVKNVEGRVSYGEAYHGYWPEDIYSLNPHFGTKQD  124
            G  +G I+ LDY++ +G  A+ +SP+           +A HGY   D Y ++PH+GT +D
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLSPIFD-------SPQADHGYDIADYYKIDPHYGTMED  53

Query  125  LLDLSAEVHKRGMFLMVDTVINNMAYITNGSDPATHIKYSTLTPFDSSSYYH---PYCKI  181
              +L ++ H+RG+ +++D V+N+ +               +        YY        I
Sbjct  54   FKELISKAHERGIKVILDLVVNHTSDEHAWFQE-----SRSSKDNPYRDYYFWRPGGGPI  108

Query  182  E--DWNNF---TQAQWCQTGD------NVVALPDLYTEHPDVQ  213
               +W ++   +   + + G        V   PDL  E+P+V+
Sbjct  109  PPNNWRSYFGGSAWTYDEKGQEYYLHLFVAGQPDLNWENPEVR  151



Lambda      K        H        a         alpha
   0.318    0.128    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00026302

Length=2420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic d...  68.5    1e-12
CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  65.1    4e-11


>CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic domain. 
 
Length=239

 Score = 68.5 bits (168),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 31/223 (14%)

Query  1167  VLIATMEYDIEDWAIKIKIGGLGVMAQLMGKTL---GHQDLIWVVPCVGGVDYPVDRPAE  1223
             +L    E     +A   K GGL  +   + K L   GH D+  ++P  G +    ++  +
Sbjct  1     ILFVASEVA--PFA---KTGGLADVVGALPKALAALGH-DVRVIMPRYGNIPEERNQLED  54

Query  1224  ----PMIVTILGKPYEVQVQYHILQNITYVLLDAPVFRQQSKSEPY-PPRMDDLDSAIYY  1278
                  +   +  +P  V V    L  +    LD P +    +   Y     D  D+A  +
Sbjct  55    VIRLSVAAGVPVRPLTVGVARLELDGVDVYFLDNPDY--FDRPGLYGDDGRDYEDNAERF  112

Query  1279  SAWNQCIAQTIKR--FPIDLYHINDYHGSLAPLYL-------LPQTIPACLSLHNAEFQG  1329
             + +++   +  K+  +  D+ H +D+H +L P YL         + I    ++HN  +QG
Sbjct  113   AFFSRAALELAKKLGWIPDIIHCHDWHTALVPAYLKEAYADDPFKNIKTVFTIHNLAYQG  172

Query  1330  LWPMRTEKEKEEVCSVFNLDKEITRRYVQFGEVFNLLHAGASY  1372
              +P             FNLD       ++F    N L AG  Y
Sbjct  173   RFPADLLDLLGLPPEDFNLDG------LEFYGQINFLKAGIVY  209


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 65.1 bits (159),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (3%)

Query  101  GDVAGLVATLDYLQGMGIKGIYLAGTILMNQPWGADGYSTLDTTLLDQHFGNIDTWRNAI  160
            GD+ G++  LDYL+ +G+  I+L+  I  + P    GY   D   +D H+G ++ ++  I
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLS-PIFDS-PQADHGYDIADYYKIDPHYGTMEDFKELI  58

Query  161  TEIHKRGMYVIFD  173
            ++ H+RG+ VI D
Sbjct  59   SKAHERGIKVILD  71



Lambda      K        H        a         alpha
   0.320    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3008875264


Query= TCONS_00026303

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00020870

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00020871

Length=2385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic d...  68.5    1e-12
CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  65.1    4e-11


>CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic domain. 
 
Length=239

 Score = 68.5 bits (168),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 31/223 (14%)

Query  1167  VLIATMEYDIEDWAIKIKIGGLGVMAQLMGKTL---GHQDLIWVVPCVGGVDYPVDRPAE  1223
             +L    E     +A   K GGL  +   + K L   GH D+  ++P  G +    ++  +
Sbjct  1     ILFVASEVA--PFA---KTGGLADVVGALPKALAALGH-DVRVIMPRYGNIPEERNQLED  54

Query  1224  ----PMIVTILGKPYEVQVQYHILQNITYVLLDAPVFRQQSKSEPY-PPRMDDLDSAIYY  1278
                  +   +  +P  V V    L  +    LD P +    +   Y     D  D+A  +
Sbjct  55    VIRLSVAAGVPVRPLTVGVARLELDGVDVYFLDNPDY--FDRPGLYGDDGRDYEDNAERF  112

Query  1279  SAWNQCIAQTIKR--FPIDLYHINDYHGSLAPLYL-------LPQTIPACLSLHNAEFQG  1329
             + +++   +  K+  +  D+ H +D+H +L P YL         + I    ++HN  +QG
Sbjct  113   AFFSRAALELAKKLGWIPDIIHCHDWHTALVPAYLKEAYADDPFKNIKTVFTIHNLAYQG  172

Query  1330  LWPMRTEKEKEEVCSVFNLDKEITRRYVQFGEVFNLLHAGASY  1372
              +P             FNLD       ++F    N L AG  Y
Sbjct  173   RFPADLLDLLGLPPEDFNLDG------LEFYGQINFLKAGIVY  209


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 65.1 bits (159),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (3%)

Query  101  GDVAGLVATLDYLQGMGIKGIYLAGTILMNQPWGADGYSTLDTTLLDQHFGNIDTWRNAI  160
            GD+ G++  LDYL+ +G+  I+L+  I  + P    GY   D   +D H+G ++ ++  I
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLS-PIFDS-PQADHGYDIADYYKIDPHYGTMEDFKELI  58

Query  161  TEIHKRGMYVIFD  173
            ++ H+RG+ VI D
Sbjct  59   SKAHERGIKVILD  71



Lambda      K        H        a         alpha
   0.320    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2963443584


Query= TCONS_00020879

Length=2353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic d...  68.9    6e-13
CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  65.1    3e-11


>CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic domain. 
 
Length=239

 Score = 68.9 bits (169),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 31/223 (14%)

Query  1167  VLIATMEYDIEDWAIKIKIGGLGVMAQLMGKTL---GHQDLIWVVPCVGGVDYPVDRPAE  1223
             +L    E     +A   K GGL  +   + K L   GH D+  ++P  G +    ++  +
Sbjct  1     ILFVASEVA--PFA---KTGGLADVVGALPKALAALGH-DVRVIMPRYGNIPEERNQLED  54

Query  1224  ----PMIVTILGKPYEVQVQYHILQNITYVLLDAPVFRQQSKSEPY-PPRMDDLDSAIYY  1278
                  +   +  +P  V V    L  +    LD P +    +   Y     D  D+A  +
Sbjct  55    VIRLSVAAGVPVRPLTVGVARLELDGVDVYFLDNPDY--FDRPGLYGDDGRDYEDNAERF  112

Query  1279  SAWNQCIAQTIKR--FPIDLYHINDYHGSLAPLYL-------LPQTIPACLSLHNAEFQG  1329
             + +++   +  K+  +  D+ H +D+H +L P YL         + I    ++HN  +QG
Sbjct  113   AFFSRAALELAKKLGWIPDIIHCHDWHTALVPAYLKEAYADDPFKNIKTVFTIHNLAYQG  172

Query  1330  LWPMRTEKEKEEVCSVFNLDKEITRRYVQFGEVFNLLHAGASY  1372
              +P             FNLD       ++F    N L AG  Y
Sbjct  173   RFPADLLDLLGLPPEDFNLDG------LEFYGQINFLKAGIVY  209


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 65.1 bits (159),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (3%)

Query  101  GDVAGLVATLDYLQGMGIKGIYLAGTILMNQPWGADGYSTLDTTLLDQHFGNIDTWRNAI  160
            GD+ G++  LDYL+ +G+  I+L+  I  + P    GY   D   +D H+G ++ ++  I
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLS-PIFDS-PQADHGYDIADYYKIDPHYGTMEDFKELI  58

Query  161  TEIHKRGMYVIFD  173
            ++ H+RG+ VI D
Sbjct  59   SKAHERGIKVILD  71



Lambda      K        H        a         alpha
   0.318    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2921906048


Query= TCONS_00020874

Length=2242
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic d...  68.5    8e-13


>CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic domain. 
 
Length=239

 Score = 68.5 bits (168),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 31/223 (14%)

Query  989   VLIATMEYDIEDWAIKIKIGGLGVMAQLMGKTL---GHQDLIWVVPCVGGVDYPVDRPAE  1045
             +L    E     +A   K GGL  +   + K L   GH D+  ++P  G +    ++  +
Sbjct  1     ILFVASEVA--PFA---KTGGLADVVGALPKALAALGH-DVRVIMPRYGNIPEERNQLED  54

Query  1046  ----PMIVTILGKPYEVQVQYHILQNITYVLLDAPVFRQQSKSEPY-PPRMDDLDSAIYY  1100
                  +   +  +P  V V    L  +    LD P +    +   Y     D  D+A  +
Sbjct  55    VIRLSVAAGVPVRPLTVGVARLELDGVDVYFLDNPDY--FDRPGLYGDDGRDYEDNAERF  112

Query  1101  SAWNQCIAQTIKR--FPIDLYHINDYHGSLAPLYL-------LPQTIPACLSLHNAEFQG  1151
             + +++   +  K+  +  D+ H +D+H +L P YL         + I    ++HN  +QG
Sbjct  113   AFFSRAALELAKKLGWIPDIIHCHDWHTALVPAYLKEAYADDPFKNIKTVFTIHNLAYQG  172

Query  1152  LWPMRTEKEKEEVCSVFNLDKEITRRYVQFGEVFNLLHAGASY  1194
              +P             FNLD       ++F    N L AG  Y
Sbjct  173   RFPADLLDLLGLPPEDFNLDG------LEFYGQINFLKAGIVY  209



Lambda      K        H        a         alpha
   0.320    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0706    0.140     1.90     42.6     43.6 

Effective search space used: 2777822720


Query= TCONS_00020872

Length=2175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic d...  69.3    5e-13


>CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic domain. 
 
Length=239

 Score = 69.3 bits (170),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 31/223 (14%)

Query  989   VLIATMEYDIEDWAIKIKIGGLGVMAQLMGKTL---GHQDLIWVVPCVGGVDYPVDRPAE  1045
             +L    E     +A   K GGL  +   + K L   GH D+  ++P  G +    ++  +
Sbjct  1     ILFVASEVA--PFA---KTGGLADVVGALPKALAALGH-DVRVIMPRYGNIPEERNQLED  54

Query  1046  ----PMIVTILGKPYEVQVQYHILQNITYVLLDAPVFRQQSKSEPY-PPRMDDLDSAIYY  1100
                  +   +  +P  V V    L  +    LD P +    +   Y     D  D+A  +
Sbjct  55    VIRLSVAAGVPVRPLTVGVARLELDGVDVYFLDNPDY--FDRPGLYGDDGRDYEDNAERF  112

Query  1101  SAWNQCIAQTIKR--FPIDLYHINDYHGSLAPLYL-------LPQTIPACLSLHNAEFQG  1151
             + +++   +  K+  +  D+ H +D+H +L P YL         + I    ++HN  +QG
Sbjct  113   AFFSRAALELAKKLGWIPDIIHCHDWHTALVPAYLKEAYADDPFKNIKTVFTIHNLAYQG  172

Query  1152  LWPMRTEKEKEEVCSVFNLDKEITRRYVQFGEVFNLLHAGASY  1194
              +P             FNLD       ++F    N L AG  Y
Sbjct  173   RFPADLLDLLGLPPEDFNLDG------LEFYGQINFLKAGIVY  209



Lambda      K        H        a         alpha
   0.318    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2732880764


Query= TCONS_00020873

Length=2225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic d...  69.3    5e-13


>CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic domain. 
 
Length=239

 Score = 69.3 bits (170),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 31/223 (14%)

Query  1039  VLIATMEYDIEDWAIKIKIGGLGVMAQLMGKTL---GHQDLIWVVPCVGGVDYPVDRPAE  1095
             +L    E     +A   K GGL  +   + K L   GH D+  ++P  G +    ++  +
Sbjct  1     ILFVASEVA--PFA---KTGGLADVVGALPKALAALGH-DVRVIMPRYGNIPEERNQLED  54

Query  1096  ----PMIVTILGKPYEVQVQYHILQNITYVLLDAPVFRQQSKSEPY-PPRMDDLDSAIYY  1150
                  +   +  +P  V V    L  +    LD P +    +   Y     D  D+A  +
Sbjct  55    VIRLSVAAGVPVRPLTVGVARLELDGVDVYFLDNPDY--FDRPGLYGDDGRDYEDNAERF  112

Query  1151  SAWNQCIAQTIKR--FPIDLYHINDYHGSLAPLYL-------LPQTIPACLSLHNAEFQG  1201
             + +++   +  K+  +  D+ H +D+H +L P YL         + I    ++HN  +QG
Sbjct  113   AFFSRAALELAKKLGWIPDIIHCHDWHTALVPAYLKEAYADDPFKNIKTVFTIHNLAYQG  172

Query  1202  LWPMRTEKEKEEVCSVFNLDKEITRRYVQFGEVFNLLHAGASY  1244
              +P             FNLD       ++F    N L AG  Y
Sbjct  173   RFPADLLDLLGLPPEDFNLDG------LEFYGQINFLKAGIVY  209



Lambda      K        H        a         alpha
   0.318    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2798765064


Query= TCONS_00020875

Length=2353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic d...  68.9    6e-13
CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  65.1    3e-11


>CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic domain. 
 
Length=239

 Score = 68.9 bits (169),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 31/223 (14%)

Query  1167  VLIATMEYDIEDWAIKIKIGGLGVMAQLMGKTL---GHQDLIWVVPCVGGVDYPVDRPAE  1223
             +L    E     +A   K GGL  +   + K L   GH D+  ++P  G +    ++  +
Sbjct  1     ILFVASEVA--PFA---KTGGLADVVGALPKALAALGH-DVRVIMPRYGNIPEERNQLED  54

Query  1224  ----PMIVTILGKPYEVQVQYHILQNITYVLLDAPVFRQQSKSEPY-PPRMDDLDSAIYY  1278
                  +   +  +P  V V    L  +    LD P +    +   Y     D  D+A  +
Sbjct  55    VIRLSVAAGVPVRPLTVGVARLELDGVDVYFLDNPDY--FDRPGLYGDDGRDYEDNAERF  112

Query  1279  SAWNQCIAQTIKR--FPIDLYHINDYHGSLAPLYL-------LPQTIPACLSLHNAEFQG  1329
             + +++   +  K+  +  D+ H +D+H +L P YL         + I    ++HN  +QG
Sbjct  113   AFFSRAALELAKKLGWIPDIIHCHDWHTALVPAYLKEAYADDPFKNIKTVFTIHNLAYQG  172

Query  1330  LWPMRTEKEKEEVCSVFNLDKEITRRYVQFGEVFNLLHAGASY  1372
              +P             FNLD       ++F    N L AG  Y
Sbjct  173   RFPADLLDLLGLPPEDFNLDG------LEFYGQINFLKAGIVY  209


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 65.1 bits (159),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (3%)

Query  101  GDVAGLVATLDYLQGMGIKGIYLAGTILMNQPWGADGYSTLDTTLLDQHFGNIDTWRNAI  160
            GD+ G++  LDYL+ +G+  I+L+  I  + P    GY   D   +D H+G ++ ++  I
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLS-PIFDS-PQADHGYDIADYYKIDPHYGTMEDFKELI  58

Query  161  TEIHKRGMYVIFD  173
            ++ H+RG+ VI D
Sbjct  59   SKAHERGIKVILD  71



Lambda      K        H        a         alpha
   0.318    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2921906048


Query= TCONS_00020876

Length=2292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic d...  68.5    9e-13


>CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic domain. 
 
Length=239

 Score = 68.5 bits (168),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 31/223 (14%)

Query  1039  VLIATMEYDIEDWAIKIKIGGLGVMAQLMGKTL---GHQDLIWVVPCVGGVDYPVDRPAE  1095
             +L    E     +A   K GGL  +   + K L   GH D+  ++P  G +    ++  +
Sbjct  1     ILFVASEVA--PFA---KTGGLADVVGALPKALAALGH-DVRVIMPRYGNIPEERNQLED  54

Query  1096  ----PMIVTILGKPYEVQVQYHILQNITYVLLDAPVFRQQSKSEPY-PPRMDDLDSAIYY  1150
                  +   +  +P  V V    L  +    LD P +    +   Y     D  D+A  +
Sbjct  55    VIRLSVAAGVPVRPLTVGVARLELDGVDVYFLDNPDY--FDRPGLYGDDGRDYEDNAERF  112

Query  1151  SAWNQCIAQTIKR--FPIDLYHINDYHGSLAPLYL-------LPQTIPACLSLHNAEFQG  1201
             + +++   +  K+  +  D+ H +D+H +L P YL         + I    ++HN  +QG
Sbjct  113   AFFSRAALELAKKLGWIPDIIHCHDWHTALVPAYLKEAYADDPFKNIKTVFTIHNLAYQG  172

Query  1202  LWPMRTEKEKEEVCSVFNLDKEITRRYVQFGEVFNLLHAGASY  1244
              +P             FNLD       ++F    N L AG  Y
Sbjct  173   RFPADLLDLLGLPPEDFNLDG------LEFYGQINFLKAGIVY  209



Lambda      K        H        a         alpha
   0.320    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2842725120


Query= TCONS_00020877

Length=2420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic d...  68.5    1e-12
CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  65.1    4e-11


>CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic domain. 
 
Length=239

 Score = 68.5 bits (168),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 31/223 (14%)

Query  1167  VLIATMEYDIEDWAIKIKIGGLGVMAQLMGKTL---GHQDLIWVVPCVGGVDYPVDRPAE  1223
             +L    E     +A   K GGL  +   + K L   GH D+  ++P  G +    ++  +
Sbjct  1     ILFVASEVA--PFA---KTGGLADVVGALPKALAALGH-DVRVIMPRYGNIPEERNQLED  54

Query  1224  ----PMIVTILGKPYEVQVQYHILQNITYVLLDAPVFRQQSKSEPY-PPRMDDLDSAIYY  1278
                  +   +  +P  V V    L  +    LD P +    +   Y     D  D+A  +
Sbjct  55    VIRLSVAAGVPVRPLTVGVARLELDGVDVYFLDNPDY--FDRPGLYGDDGRDYEDNAERF  112

Query  1279  SAWNQCIAQTIKR--FPIDLYHINDYHGSLAPLYL-------LPQTIPACLSLHNAEFQG  1329
             + +++   +  K+  +  D+ H +D+H +L P YL         + I    ++HN  +QG
Sbjct  113   AFFSRAALELAKKLGWIPDIIHCHDWHTALVPAYLKEAYADDPFKNIKTVFTIHNLAYQG  172

Query  1330  LWPMRTEKEKEEVCSVFNLDKEITRRYVQFGEVFNLLHAGASY  1372
              +P             FNLD       ++F    N L AG  Y
Sbjct  173   RFPADLLDLLGLPPEDFNLDG------LEFYGQINFLKAGIVY  209


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 65.1 bits (159),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (3%)

Query  101  GDVAGLVATLDYLQGMGIKGIYLAGTILMNQPWGADGYSTLDTTLLDQHFGNIDTWRNAI  160
            GD+ G++  LDYL+ +G+  I+L+  I  + P    GY   D   +D H+G ++ ++  I
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLS-PIFDS-PQADHGYDIADYYKIDPHYGTMEDFKELI  58

Query  161  TEIHKRGMYVIFD  173
            ++ H+RG+ VI D
Sbjct  59   SKAHERGIKVILD  71



Lambda      K        H        a         alpha
   0.320    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0706    0.140     1.90     42.6     43.6 

Effective search space used: 3008875264


Query= TCONS_00020878

Length=2318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic d...  68.9    6e-13
CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic dom...  65.1    3e-11


>CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic domain. 
 
Length=239

 Score = 68.9 bits (169),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 31/223 (14%)

Query  1167  VLIATMEYDIEDWAIKIKIGGLGVMAQLMGKTL---GHQDLIWVVPCVGGVDYPVDRPAE  1223
             +L    E     +A   K GGL  +   + K L   GH D+  ++P  G +    ++  +
Sbjct  1     ILFVASEVA--PFA---KTGGLADVVGALPKALAALGH-DVRVIMPRYGNIPEERNQLED  54

Query  1224  ----PMIVTILGKPYEVQVQYHILQNITYVLLDAPVFRQQSKSEPY-PPRMDDLDSAIYY  1278
                  +   +  +P  V V    L  +    LD P +    +   Y     D  D+A  +
Sbjct  55    VIRLSVAAGVPVRPLTVGVARLELDGVDVYFLDNPDY--FDRPGLYGDDGRDYEDNAERF  112

Query  1279  SAWNQCIAQTIKR--FPIDLYHINDYHGSLAPLYL-------LPQTIPACLSLHNAEFQG  1329
             + +++   +  K+  +  D+ H +D+H +L P YL         + I    ++HN  +QG
Sbjct  113   AFFSRAALELAKKLGWIPDIIHCHDWHTALVPAYLKEAYADDPFKNIKTVFTIHNLAYQG  172

Query  1330  LWPMRTEKEKEEVCSVFNLDKEITRRYVQFGEVFNLLHAGASY  1372
              +P             FNLD       ++F    N L AG  Y
Sbjct  173   RFPADLLDLLGLPPEDFNLDG------LEFYGQINFLKAGIVY  209


>CDD:395077 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain.  Alpha 
amylase is classified as family 13 of the glycosyl hydrolases. 
The structure is an 8 stranded alpha/beta barrel containing 
the active site, interrupted by a ~70 a.a. calcium-binding 
domain protruding between beta strand 3 and alpha helix 
3, and a carboxyl-terminal Greek key beta-barrel domain.
Length=334

 Score = 65.1 bits (159),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (3%)

Query  101  GDVAGLVATLDYLQGMGIKGIYLAGTILMNQPWGADGYSTLDTTLLDQHFGNIDTWRNAI  160
            GD+ G++  LDYL+ +G+  I+L+  I  + P    GY   D   +D H+G ++ ++  I
Sbjct  1    GDLQGIIEKLDYLKELGVTAIWLS-PIFDS-PQADHGYDIADYYKIDPHYGTMEDFKELI  58

Query  161  TEIHKRGMYVIFD  173
            ++ H+RG+ VI D
Sbjct  59   SKAHERGIKVILD  71



Lambda      K        H        a         alpha
   0.319    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2876474368


Query= TCONS_00026304

Length=2242
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic d...  68.5    8e-13


>CDD:400563 pfam08323, Glyco_transf_5, Starch synthase catalytic domain. 
 
Length=239

 Score = 68.5 bits (168),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 31/223 (14%)

Query  989   VLIATMEYDIEDWAIKIKIGGLGVMAQLMGKTL---GHQDLIWVVPCVGGVDYPVDRPAE  1045
             +L    E     +A   K GGL  +   + K L   GH D+  ++P  G +    ++  +
Sbjct  1     ILFVASEVA--PFA---KTGGLADVVGALPKALAALGH-DVRVIMPRYGNIPEERNQLED  54

Query  1046  ----PMIVTILGKPYEVQVQYHILQNITYVLLDAPVFRQQSKSEPY-PPRMDDLDSAIYY  1100
                  +   +  +P  V V    L  +    LD P +    +   Y     D  D+A  +
Sbjct  55    VIRLSVAAGVPVRPLTVGVARLELDGVDVYFLDNPDY--FDRPGLYGDDGRDYEDNAERF  112

Query  1101  SAWNQCIAQTIKR--FPIDLYHINDYHGSLAPLYL-------LPQTIPACLSLHNAEFQG  1151
             + +++   +  K+  +  D+ H +D+H +L P YL         + I    ++HN  +QG
Sbjct  113   AFFSRAALELAKKLGWIPDIIHCHDWHTALVPAYLKEAYADDPFKNIKTVFTIHNLAYQG  172

Query  1152  LWPMRTEKEKEEVCSVFNLDKEITRRYVQFGEVFNLLHAGASY  1194
              +P             FNLD       ++F    N L AG  Y
Sbjct  173   RFPADLLDLLGLPPEDFNLDG------LEFYGQINFLKAGIVY  209



Lambda      K        H        a         alpha
   0.320    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2777822720


Query= TCONS_00020880

Length=527


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00020881

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  184     8e-58


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 184 bits (471),  Expect = 8e-58, Method: Composition-based stats.
 Identities = 71/216 (33%), Positives = 112/216 (52%), Gaps = 9/216 (4%)

Query  114  MVIGAALEVAGYAVRCASVRKPADIALYAVSSTIIVIAPVFVCASLYMLLGKLETSSDSG  173
             ++G  LEV GY  R  S   P  +  + +   ++++AP F+ A++YM LG++  +    
Sbjct  1    FILGCILEVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRALGES  60

Query  174  AKQPPAAFLCGGSGRRLPWMFVTLDILAVLTQGSGSGIASSEDWEGSTKDVGIGVLIGGL  233
                    L     R   W+FVT D+L+++ Q +G G+A+S D     K  G  ++I GL
Sbjct  61   --------LSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAK-TGENIMIAGL  111

Query  234  VLQVVTFATYLVIVAWFQWRVMAEGHQLPHGVRMVLKGVYLAGFFIMLRSIYRVFEFAFG  293
              QV     ++++ A F  RV     +L    ++ L  +Y A   I++RSIYRV E A G
Sbjct  112  AFQVAFLGIFIILAADFHRRVRRSTLRLSRRWKLFLLALYAASLLILIRSIYRVAELAQG  171

Query  294  IDSYTFTHEWPLYVLEAVPMLVALLVLGWFHPARWL  329
             D Y  THE   YVL+ + ML+A+++L  FHP    
Sbjct  172  WDGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLF  207



Lambda      K        H        a         alpha
   0.323    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00026305

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  184     8e-58


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 184 bits (471),  Expect = 8e-58, Method: Composition-based stats.
 Identities = 71/216 (33%), Positives = 112/216 (52%), Gaps = 9/216 (4%)

Query  114  MVIGAALEVAGYAVRCASVRKPADIALYAVSSTIIVIAPVFVCASLYMLLGKLETSSDSG  173
             ++G  LEV GY  R  S   P  +  + +   ++++AP F+ A++YM LG++  +    
Sbjct  1    FILGCILEVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRALGES  60

Query  174  AKQPPAAFLCGGSGRRLPWMFVTLDILAVLTQGSGSGIASSEDWEGSTKDVGIGVLIGGL  233
                    L     R   W+FVT D+L+++ Q +G G+A+S D     K  G  ++I GL
Sbjct  61   --------LSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAK-TGENIMIAGL  111

Query  234  VLQVVTFATYLVIVAWFQWRVMAEGHQLPHGVRMVLKGVYLAGFFIMLRSIYRVFEFAFG  293
              QV     ++++ A F  RV     +L    ++ L  +Y A   I++RSIYRV E A G
Sbjct  112  AFQVAFLGIFIILAADFHRRVRRSTLRLSRRWKLFLLALYAASLLILIRSIYRVAELAQG  171

Query  294  IDSYTFTHEWPLYVLEAVPMLVALLVLGWFHPARWL  329
             D Y  THE   YVL+ + ML+A+++L  FHP    
Sbjct  172  WDGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLF  207



Lambda      K        H        a         alpha
   0.323    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00026306

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00020883

Length=397


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00020884

Length=170
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462767 pfam09351, DUF1993, Domain of unknown function (DUF199...  252     6e-88


>CDD:462767 pfam09351, DUF1993, Domain of unknown function (DUF1993).  This 
family of proteins are functionally uncharacterized.
Length=161

 Score = 252 bits (647),  Expect = 6e-88, Method: Composition-based stats.
 Identities = 87/160 (54%), Positives = 111/160 (69%), Gaps = 0/160 (0%)

Query  6    YTYTVPTYLKGLDTLTFMLKKAEEYAKENNIPLSEFAEARLYPDMLPLSFQVQCVSNTSK  65
            Y  +VP +++GL  L+ +L KAE +AK   I   E  +ARL PDMLPLSFQVQ  S+T+K
Sbjct  2    YDASVPVFIRGLKNLSAILTKAEAHAKAKGIDPEELLDARLAPDMLPLSFQVQIASDTAK  61

Query  66   NSVARLSGTDIVPMEDNEKTFEEFYDRINRTIDVIKAVDPKLFEGREHTEFSVKLGSYES  125
             +VARL+G +    EDNE TF E   RI +TI +++AVDP+ F+G E  E ++KLG  E 
Sbjct  62   KAVARLAGVEPPSFEDNETTFAELQARIAKTIALLEAVDPEAFDGAEDREVTLKLGGKEL  121

Query  126  TFTGESYVNRFGLPNFFFHLNIAYAILRSKGVPLGKFDYL  165
             FTG+ Y+  F LPNF+FHL  AYAILR KGVPLGK DYL
Sbjct  122  EFTGQDYLLGFALPNFYFHLTTAYAILRHKGVPLGKRDYL  161



Lambda      K        H        a         alpha
   0.319    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00020885

Length=26


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.120    0.318    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82037150


Query= TCONS_00020886

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00020887

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, ...  193     7e-60


>CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
 This family consists of taurine catabolism dioxygenases 
of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent 
taurine dioxygenase. This enzyme catalyzes 
the oxygenolytic release of sulfite from taurine. TfdA 
from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate 
dioxygenase. TfdA from Alcaligenes eutrophus 
JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also 
included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.
Length=264

 Score = 193 bits (491),  Expect = 7e-60, Method: Composition-based stats.
 Identities = 91/269 (34%), Positives = 123/269 (46%), Gaps = 8/269 (3%)

Query  85   EVIHLTKHIGTEIVGL-QLKDLNDKQKDELGLLIAERSVVFFRDQDISPQQQKELGEWFG  143
            EV  LT  IG EIV L     L+D+ ++EL  L+AE  V+ FR Q +SP+Q       FG
Sbjct  1    EVRPLTPAIGAEIVDLPDPLALDDELREELRELLAEHGVLLFRGQPLSPEQLLAFARRFG  60

Query  144  EVEVHPQVPQVPGVPGVTVLWPALQAAETPAAFRRPGGASRWHTDLVHERQPAGVTHLHN  203
             +   P   +  G P V  +  ++     PA     G    WHTDL +   P G+  LH 
Sbjct  61   PLYGTPGGGRNDGYPEVLDVS-SVYPDADPANTAYTGLP--WHTDLSYLEDPPGIQLLHC  117

Query  204  DTVPSIGGDTLWASGYAAYEKLSPSFRQFIDGKTAIYRSAH--PYLDRKHPEKGPVYVER  261
                  GG+TL+A G AAY  L     +  +G TA++            +      +   
Sbjct  118  LEAAPEGGETLFADGRAAYNALPEELPELFEGLTAVHSYFRYRGEAYPANRPADDKHPPT  177

Query  262  EHPLVRVHPATGWKTLWVNRAMTVRIVGLDKAESDVILGYLCDVYEKNIDIQVRFKWTPR  321
             HP+VR HP TG K L+VN     RIVGL   ESD  L  L  +     +   RFKW P 
Sbjct  178  GHPVVRTHPVTGRKALYVNPPFATRIVGLGTPESDEALDALFALATDP-EFTYRFKWQPG  236

Query  322  TSALWDNRITIHNVSWDYEGLEPRHGTRV  350
               +WDNR  +H  +  ++  E RH  R 
Sbjct  237  DLVIWDNRRVLHGRT-AFDPGERRHLLRA  264



Lambda      K        H        a         alpha
   0.318    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00026307

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00020893

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00020891

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00020890

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00020889

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00020892

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00026308

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.122    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00020895

Length=178
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  178     1e-57


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 178 bits (453),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 70/164 (43%), Positives = 97/164 (59%), Gaps = 8/164 (5%)

Query  1    MVLGRLIRSIQAEKHSVIRVNWLTKIFVASDVLSFLIQGSGAGLMANGS---RADMGNNI  57
            M LGR+IR++  E  S +R  W T IFV  DVLS ++Q +G GL A+      A  G NI
Sbjct  48   MTLGRIIRAL-GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENI  106

Query  58   VIAGLVLQVLMFGLFMVTSFEFERRMHRAPGGHVLDADVPWKTHLHVLDAVSALILIRSV  117
            +IAGL  QV   G+F++ + +F RR+ R+     L     WK  L  L A S LILIRS+
Sbjct  107  MIAGLAFQVAFLGIFIILAADFHRRVRRST----LRLSRRWKLFLLALYAASLLILIRSI  162

Query  118  FRVIEYAEGQDGYLLGHEWTMYIFDSVPMITAMALWAMWHPSVI  161
            +RV E A+G DGYL+ HE   Y+ D + M+ A+ L  ++HP  +
Sbjct  163  YRVAELAQGWDGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.327    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00020896

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  235     2e-79


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 235 bits (601),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 92/204 (45%), Positives = 125/204 (61%), Gaps = 8/204 (4%)

Query  13   EIIGYIGRIDSHGKTGQLGPYIIQSVFILLGPVLFAASVYMVLGRLIRSIQAEKHSVIRV  72
            E+IGYIGRI SH     LGP+I+Q V +LL P   AA++YM LGR+IR++  E  S +R 
Sbjct  8    EVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRAL-GESLSRLRP  66

Query  73   NWLTKIFVASDVLSFLIQGSGAGLMANGS---RADMGNNIVIAGLVLQVLMFGLFMVTSF  129
             W T IFV  DVLS ++Q +G GL A+      A  G NI+IAGL  QV   G+F++ + 
Sbjct  67   RWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENIMIAGLAFQVAFLGIFIILAA  126

Query  130  EFERRMHRAPGGHVLDADVPWKTHLHVLDAVSALILIRSVFRVIEYAEGQDGYLLGHEWT  189
            +F RR+ R+     L     WK  L  L A S LILIRS++RV E A+G DGYL+ HE  
Sbjct  127  DFHRRVRRST----LRLSRRWKLFLLALYAASLLILIRSIYRVAELAQGWDGYLMTHEVY  182

Query  190  MYIFDSVPMITAMALWAMWHPSVI  213
             Y+ D + M+ A+ L  ++HP  +
Sbjct  183  FYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.326    0.139    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0653    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00020897

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  194     1e-63


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 194 bits (496),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 79/204 (39%), Positives = 110/204 (54%), Gaps = 30/204 (15%)

Query  13   EIIGYIGRIDSHGKTGQLGPYIIQSVFILLGPVLFAASVYMVLGRLIRSIQAEKHSVIRV  72
            E+IGYIGRI SH     LGP+I+Q V +LL P   AA++YM LGR+IR++  E  S +R 
Sbjct  8    EVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRAL-GESLSRLRP  66

Query  73   NWLTKIFVASDVLSFLIQGSGAGLMANGS---RADMGNNIVIAGLVLQVLMFGLFMVTSF  129
             W T IFV  DVLS ++Q +G GL A+      A  G NI+IAGL  QV   G+F++ + 
Sbjct  67   RWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENIMIAGLAFQVAFLGIFIILAA  126

Query  130  EFERRMHRAPGGHVLDADVPWKTH----------------------AEGQDGYLLGHEWT  167
            +F RR+ R+     L     WK                        A+G DGYL+ HE  
Sbjct  127  DFHRRVRRST----LRLSRRWKLFLLALYAASLLILIRSIYRVAELAQGWDGYLMTHEVY  182

Query  168  MYIFDSVPMITAMALWAMWHPSVI  191
             Y+ D + M+ A+ L  ++HP  +
Sbjct  183  FYVLDGLMMLLAVVLLNVFHPGFL  206



Lambda      K        H        a         alpha
   0.325    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00026309

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464754 pfam15508, NAAA-beta, beta subunit of N-acylethanolami...  68.8    2e-15


>CDD:464754 pfam15508, NAAA-beta, beta subunit of N-acylethanolamine-hydrolyzing 
acid amidase.  NAAA-beta is a family of vertebral sequences 
that form the beta subunit of vertebral N-acylethanolamine-hydrolyzing 
acid amidase, a member of the choloylglycine 
hydrolase acid ceramidase family. The alpha subunit is represented 
by family CBAH, pfam02275.
Length=63

 Score = 68.8 bits (169),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 23/61 (38%), Positives = 35/61 (57%), Gaps = 0/61 (0%)

Query  10  PPTYRIDLSRPPAERYVEVAKKYRNELRSLTTLFDSLVESVAPNISLLWVKRLARLFLRR  69
            P Y I+L  PP ER+ +VAK Y+ E++SL      L++S+ P   +  V +LA   LR 
Sbjct  3   VPWYVINLDLPPEERWTQVAKDYKPEIKSLIPALKDLLKSLVPGKLVPLVDKLAADLLRY  62

Query  70  V  70
           +
Sbjct  63  L  63



Lambda      K        H        a         alpha
   0.320    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00020899

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464754 pfam15508, NAAA-beta, beta subunit of N-acylethanolami...  68.8    2e-15


>CDD:464754 pfam15508, NAAA-beta, beta subunit of N-acylethanolamine-hydrolyzing 
acid amidase.  NAAA-beta is a family of vertebral sequences 
that form the beta subunit of vertebral N-acylethanolamine-hydrolyzing 
acid amidase, a member of the choloylglycine 
hydrolase acid ceramidase family. The alpha subunit is represented 
by family CBAH, pfam02275.
Length=63

 Score = 68.8 bits (169),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 23/61 (38%), Positives = 35/61 (57%), Gaps = 0/61 (0%)

Query  10  PPTYRIDLSRPPAERYVEVAKKYRNELRSLTTLFDSLVESVAPNISLLWVKRLARLFLRR  69
            P Y I+L  PP ER+ +VAK Y+ E++SL      L++S+ P   +  V +LA   LR 
Sbjct  3   VPWYVINLDLPPEERWTQVAKDYKPEIKSLIPALKDLLKSLVPGKLVPLVDKLAADLLRY  62

Query  70  V  70
           +
Sbjct  63  L  63



Lambda      K        H        a         alpha
   0.320    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00020898

Length=392


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00020900

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464754 pfam15508, NAAA-beta, beta subunit of N-acylethanolami...  68.8    2e-15


>CDD:464754 pfam15508, NAAA-beta, beta subunit of N-acylethanolamine-hydrolyzing 
acid amidase.  NAAA-beta is a family of vertebral sequences 
that form the beta subunit of vertebral N-acylethanolamine-hydrolyzing 
acid amidase, a member of the choloylglycine 
hydrolase acid ceramidase family. The alpha subunit is represented 
by family CBAH, pfam02275.
Length=63

 Score = 68.8 bits (169),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 23/61 (38%), Positives = 35/61 (57%), Gaps = 0/61 (0%)

Query  10  PPTYRIDLSRPPAERYVEVAKKYRNELRSLTTLFDSLVESVAPNISLLWVKRLARLFLRR  69
            P Y I+L  PP ER+ +VAK Y+ E++SL      L++S+ P   +  V +LA   LR 
Sbjct  3   VPWYVINLDLPPEERWTQVAKDYKPEIKSLIPALKDLLKSLVPGKLVPLVDKLAADLLRY  62

Query  70  V  70
           +
Sbjct  63  L  63



Lambda      K        H        a         alpha
   0.320    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00020901

Length=301


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00020903

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00020904

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00020905

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425566 pfam00264, Tyrosinase, Common central domain of tyrosi...  231     8e-76


>CDD:425566 pfam00264, Tyrosinase, Common central domain of tyrosinase.  
This family also contains polyphenol oxidases and some hemocyanins. 
Binds two copper ions via two sets of three histidines. 
This family is related to pfam00372.
Length=209

 Score = 231 bits (590),  Expect = 8e-76, Method: Composition-based stats.
 Identities = 98/235 (42%), Positives = 120/235 (51%), Gaps = 32/235 (14%)

Query  128  RSRYDDFVAVH-INQT-WVIHGTGNFLTWHRYFTWAYEQALRNECGY---TGYQPYWAWN  182
             S YDDF A+H I  T W IHG G FL WHRY+   +EQALR ECGY   TG  PYW W 
Sbjct  1    PSSYDDFAAIHGIPFTPWPIHGNGLFLPWHRYYLLLFEQALREECGYADPTGTLPYWDWT  60

Query  183  KYADDPRNSPIFDGSDYSMSGDGSYIPHDGSEAAPGIVLTPGNGGGCVFSGPFKNFTV-N  241
                 P  S     S  S+ G+G++IP +G               G V +GPF N+TV N
Sbjct  61   DDPTSPGIS-----SPTSLGGNGTFIPPNGGV-------------GEVTNGPFANYTVPN  102

Query  242  LGPVFPSLKVPGIVAQNGSGLDYNPRCLRRDISEDAASWTTTEHVLDLIEKQNNILDFQN  301
            LGP         I     + L YNPRCL RD         T + V DL+  Q +   F N
Sbjct  103  LGP-------HTIRRPPDNALAYNPRCLTRDNPLLKQQLNTLDVVDDLLTYQPDYTSFSN  155

Query  302  RMQGDFPNGFLGVHSGGHYTIGGDPGGDFFVSPGDPAFYLHHAAIDRVFWTWQNQ  356
             ++GD  N     H+G H  +GGD  GD F +P DP F+LHHA IDR++  WQ  
Sbjct  156  TLEGDGGNEEGLPHNGVHVWVGGDM-GDVFTAPNDPIFFLHHANIDRLWAIWQRL  209



Lambda      K        H        a         alpha
   0.321    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00026310

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425566 pfam00264, Tyrosinase, Common central domain of tyrosi...  187     4e-59


>CDD:425566 pfam00264, Tyrosinase, Common central domain of tyrosinase.  
This family also contains polyphenol oxidases and some hemocyanins. 
Binds two copper ions via two sets of three histidines. 
This family is related to pfam00372.
Length=209

 Score = 187 bits (477),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 84/208 (40%), Positives = 102/208 (49%), Gaps = 31/208 (15%)

Query  96   RSRYDDFVAVH-INQT-WVIHGTGNFLTWHRYFTWAYEQALRNECGY---TGYQPYWAWN  150
             S YDDF A+H I  T W IHG G FL WHRY+   +EQALR ECGY   TG  PYW W 
Sbjct  1    PSSYDDFAAIHGIPFTPWPIHGNGLFLPWHRYYLLLFEQALREECGYADPTGTLPYWDWT  60

Query  151  KYADDPRNSPIFDGSDYSMSGDGSYIPHDGSEAAPGIVLTPGNGGGCVFSGPFKNFTV-N  209
                 P  S     S  S+ G+G++IP +G               G V +GPF N+TV N
Sbjct  61   DDPTSPGIS-----SPTSLGGNGTFIPPNGGV-------------GEVTNGPFANYTVPN  102

Query  210  LGPVFPSLKVPGIVAQNGSGLDYNPRCLRRDISEDAASWTTTEHVLDLIEKQNNILDFQN  269
            LGP         I     + L YNPRCL RD         T + V DL+  Q +   F N
Sbjct  103  LGP-------HTIRRPPDNALAYNPRCLTRDNPLLKQQLNTLDVVDDLLTYQPDYTSFSN  155

Query  270  RMQGDFPNGFLGVHSGGHYTIGGDPGGV  297
             ++GD  N     H+G H  +GGD G V
Sbjct  156  TLEGDGGNEEGLPHNGVHVWVGGDMGDV  183



Lambda      K        H        a         alpha
   0.319    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00020906

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425566 pfam00264, Tyrosinase, Common central domain of tyrosi...  112     2e-31


>CDD:425566 pfam00264, Tyrosinase, Common central domain of tyrosinase.  
This family also contains polyphenol oxidases and some hemocyanins. 
Binds two copper ions via two sets of three histidines. 
This family is related to pfam00372.
Length=209

 Score = 112 bits (281),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 49/114 (43%), Positives = 58/114 (51%), Gaps = 23/114 (20%)

Query  96   RSRYDDFVAVH-INQT-WVIHGTGNFLTWHRYFTWAYEQALRNECGY---TGYQPYWAWN  150
             S YDDF A+H I  T W IHG G FL WHRY+   +EQALR ECGY   TG  PYW W 
Sbjct  1    PSSYDDFAAIHGIPFTPWPIHGNGLFLPWHRYYLLLFEQALREECGYADPTGTLPYWDWT  60

Query  151  KYADDPRNSPIFDGSDYSMSGDGSYIPHDGSEAAPGIVLTPGNGGGCVFSGPFK  204
                 P  S     S  S+ G+G++IP +G               G V +GPF 
Sbjct  61   DDPTSPGIS-----SPTSLGGNGTFIPPNGGV-------------GEVTNGPFA  96



Lambda      K        H        a         alpha
   0.319    0.134    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00026311

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425566 pfam00264, Tyrosinase, Common central domain of tyrosi...  231     9e-76


>CDD:425566 pfam00264, Tyrosinase, Common central domain of tyrosinase.  
This family also contains polyphenol oxidases and some hemocyanins. 
Binds two copper ions via two sets of three histidines. 
This family is related to pfam00372.
Length=209

 Score = 231 bits (592),  Expect = 9e-76, Method: Composition-based stats.
 Identities = 98/235 (42%), Positives = 120/235 (51%), Gaps = 32/235 (14%)

Query  96   RSRYDDFVAVH-INQT-WVIHGTGNFLTWHRYFTWAYEQALRNECGY---TGYQPYWAWN  150
             S YDDF A+H I  T W IHG G FL WHRY+   +EQALR ECGY   TG  PYW W 
Sbjct  1    PSSYDDFAAIHGIPFTPWPIHGNGLFLPWHRYYLLLFEQALREECGYADPTGTLPYWDWT  60

Query  151  KYADDPRNSPIFDGSDYSMSGDGSYIPHDGSEAAPGIVLTPGNGGGCVFSGPFKNFTV-N  209
                 P  S     S  S+ G+G++IP +G               G V +GPF N+TV N
Sbjct  61   DDPTSPGIS-----SPTSLGGNGTFIPPNGGV-------------GEVTNGPFANYTVPN  102

Query  210  LGPVFPSLKVPGIVAQNGSGLDYNPRCLRRDISEDAASWTTTEHVLDLIEKQNNILDFQN  269
            LGP         I     + L YNPRCL RD         T + V DL+  Q +   F N
Sbjct  103  LGP-------HTIRRPPDNALAYNPRCLTRDNPLLKQQLNTLDVVDDLLTYQPDYTSFSN  155

Query  270  RMQGDFPNGFLGVHSGGHYTIGGDPGGDFFVSPGDPAFYLHHAAIDRVFWTWQNQ  324
             ++GD  N     H+G H  +GGD  GD F +P DP F+LHHA IDR++  WQ  
Sbjct  156  TLEGDGGNEEGLPHNGVHVWVGGDM-GDVFTAPNDPIFFLHHANIDRLWAIWQRL  209



Lambda      K        H        a         alpha
   0.320    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00020907

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425566 pfam00264, Tyrosinase, Common central domain of tyrosi...  112     2e-31


>CDD:425566 pfam00264, Tyrosinase, Common central domain of tyrosinase.  
This family also contains polyphenol oxidases and some hemocyanins. 
Binds two copper ions via two sets of three histidines. 
This family is related to pfam00372.
Length=209

 Score = 112 bits (281),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 49/114 (43%), Positives = 58/114 (51%), Gaps = 23/114 (20%)

Query  96   RSRYDDFVAVH-INQT-WVIHGTGNFLTWHRYFTWAYEQALRNECGY---TGYQPYWAWN  150
             S YDDF A+H I  T W IHG G FL WHRY+   +EQALR ECGY   TG  PYW W 
Sbjct  1    PSSYDDFAAIHGIPFTPWPIHGNGLFLPWHRYYLLLFEQALREECGYADPTGTLPYWDWT  60

Query  151  KYADDPRNSPIFDGSDYSMSGDGSYIPHDGSEAAPGIVLTPGNGGGCVFSGPFK  204
                 P  S     S  S+ G+G++IP +G               G V +GPF 
Sbjct  61   DDPTSPGIS-----SPTSLGGNGTFIPPNGGV-------------GEVTNGPFA  96



Lambda      K        H        a         alpha
   0.319    0.134    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00026312

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425566 pfam00264, Tyrosinase, Common central domain of tyrosi...  231     9e-76


>CDD:425566 pfam00264, Tyrosinase, Common central domain of tyrosinase.  
This family also contains polyphenol oxidases and some hemocyanins. 
Binds two copper ions via two sets of three histidines. 
This family is related to pfam00372.
Length=209

 Score = 231 bits (592),  Expect = 9e-76, Method: Composition-based stats.
 Identities = 98/235 (42%), Positives = 120/235 (51%), Gaps = 32/235 (14%)

Query  96   RSRYDDFVAVH-INQT-WVIHGTGNFLTWHRYFTWAYEQALRNECGY---TGYQPYWAWN  150
             S YDDF A+H I  T W IHG G FL WHRY+   +EQALR ECGY   TG  PYW W 
Sbjct  1    PSSYDDFAAIHGIPFTPWPIHGNGLFLPWHRYYLLLFEQALREECGYADPTGTLPYWDWT  60

Query  151  KYADDPRNSPIFDGSDYSMSGDGSYIPHDGSEAAPGIVLTPGNGGGCVFSGPFKNFTV-N  209
                 P  S     S  S+ G+G++IP +G               G V +GPF N+TV N
Sbjct  61   DDPTSPGIS-----SPTSLGGNGTFIPPNGGV-------------GEVTNGPFANYTVPN  102

Query  210  LGPVFPSLKVPGIVAQNGSGLDYNPRCLRRDISEDAASWTTTEHVLDLIEKQNNILDFQN  269
            LGP         I     + L YNPRCL RD         T + V DL+  Q +   F N
Sbjct  103  LGP-------HTIRRPPDNALAYNPRCLTRDNPLLKQQLNTLDVVDDLLTYQPDYTSFSN  155

Query  270  RMQGDFPNGFLGVHSGGHYTIGGDPGGDFFVSPGDPAFYLHHAAIDRVFWTWQNQ  324
             ++GD  N     H+G H  +GGD  GD F +P DP F+LHHA IDR++  WQ  
Sbjct  156  TLEGDGGNEEGLPHNGVHVWVGGDM-GDVFTAPNDPIFFLHHANIDRLWAIWQRL  209



Lambda      K        H        a         alpha
   0.320    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00026313

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425566 pfam00264, Tyrosinase, Common central domain of tyrosi...  187     4e-59


>CDD:425566 pfam00264, Tyrosinase, Common central domain of tyrosinase.  
This family also contains polyphenol oxidases and some hemocyanins. 
Binds two copper ions via two sets of three histidines. 
This family is related to pfam00372.
Length=209

 Score = 187 bits (477),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 84/208 (40%), Positives = 102/208 (49%), Gaps = 31/208 (15%)

Query  96   RSRYDDFVAVH-INQT-WVIHGTGNFLTWHRYFTWAYEQALRNECGY---TGYQPYWAWN  150
             S YDDF A+H I  T W IHG G FL WHRY+   +EQALR ECGY   TG  PYW W 
Sbjct  1    PSSYDDFAAIHGIPFTPWPIHGNGLFLPWHRYYLLLFEQALREECGYADPTGTLPYWDWT  60

Query  151  KYADDPRNSPIFDGSDYSMSGDGSYIPHDGSEAAPGIVLTPGNGGGCVFSGPFKNFTV-N  209
                 P  S     S  S+ G+G++IP +G               G V +GPF N+TV N
Sbjct  61   DDPTSPGIS-----SPTSLGGNGTFIPPNGGV-------------GEVTNGPFANYTVPN  102

Query  210  LGPVFPSLKVPGIVAQNGSGLDYNPRCLRRDISEDAASWTTTEHVLDLIEKQNNILDFQN  269
            LGP         I     + L YNPRCL RD         T + V DL+  Q +   F N
Sbjct  103  LGP-------HTIRRPPDNALAYNPRCLTRDNPLLKQQLNTLDVVDDLLTYQPDYTSFSN  155

Query  270  RMQGDFPNGFLGVHSGGHYTIGGDPGGV  297
             ++GD  N     H+G H  +GGD G V
Sbjct  156  TLEGDGGNEEGLPHNGVHVWVGGDMGDV  183



Lambda      K        H        a         alpha
   0.319    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00020908

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00020909

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425566 pfam00264, Tyrosinase, Common central domain of tyrosi...  231     3e-76


>CDD:425566 pfam00264, Tyrosinase, Common central domain of tyrosinase.  
This family also contains polyphenol oxidases and some hemocyanins. 
Binds two copper ions via two sets of three histidines. 
This family is related to pfam00372.
Length=209

 Score = 231 bits (590),  Expect = 3e-76, Method: Composition-based stats.
 Identities = 98/235 (42%), Positives = 120/235 (51%), Gaps = 32/235 (14%)

Query  37   RSRYDDFVAVH-INQT-WVIHGTGNFLTWHRYFTWAYEQALRNECGY---TGYQPYWAWN  91
             S YDDF A+H I  T W IHG G FL WHRY+   +EQALR ECGY   TG  PYW W 
Sbjct  1    PSSYDDFAAIHGIPFTPWPIHGNGLFLPWHRYYLLLFEQALREECGYADPTGTLPYWDWT  60

Query  92   KYADDPRNSPIFDGSDYSMSGDGSYIPHDGSEAAPGIVLTPGNGGGCVFSGPFKNFTV-N  150
                 P  S     S  S+ G+G++IP +G               G V +GPF N+TV N
Sbjct  61   DDPTSPGIS-----SPTSLGGNGTFIPPNGGV-------------GEVTNGPFANYTVPN  102

Query  151  LGPVFPSLKVPGIVAQNGSGLDYNPRCLRRDISEDAASWTTTEHVLDLIEKQNNILDFQN  210
            LGP         I     + L YNPRCL RD         T + V DL+  Q +   F N
Sbjct  103  LGP-------HTIRRPPDNALAYNPRCLTRDNPLLKQQLNTLDVVDDLLTYQPDYTSFSN  155

Query  211  RMQGDFPNGFLGVHSGGHYTIGGDPGGDFFVSPGDPAFYLHHAAIDRVFWTWQNQ  265
             ++GD  N     H+G H  +GGD  GD F +P DP F+LHHA IDR++  WQ  
Sbjct  156  TLEGDGGNEEGLPHNGVHVWVGGDM-GDVFTAPNDPIFFLHHANIDRLWAIWQRL  209



Lambda      K        H        a         alpha
   0.320    0.139    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00020911

Length=637
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF32...  776     0.0  


>CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF3292).  This 
eukaryotic family of proteins has no known function.
Length=648

 Score = 776 bits (2005),  Expect = 0.0, Method: Composition-based stats.
 Identities = 286/621 (46%), Positives = 379/621 (61%), Gaps = 35/621 (6%)

Query  45   KPAPKAIAETLTPGLSDEDLWMLIRRFNKQIYHVKAAANTASEDLDLNRAQDEQFPPEKL  104
              +P  I E L  GLS+EDLWMLIRRFNKQIYHVKA  +     LDLN A +E+F P+KL
Sbjct  34   NESPDNIPEPLVGGLSNEDLWMLIRRFNKQIYHVKAIPDPPLGGLDLNIADEEEFSPDKL  93

Query  105  RITIERFYTSVVVELVGFCRHIARLRSWKEPRRTAVFCAGYFIAWLLDVVIFTLSGLLIA  164
            R  +ER Y +V+V L+ F +HIARLRSW+EPRRTA FCA YF+AWLLD+++ TL   LIA
Sbjct  94   RANLERLYMTVIVGLIAFWKHIARLRSWREPRRTAAFCAVYFVAWLLDLLVPTLVAFLIA  153

Query  165  LILCPPLRRALFPGASPASTDLENSTPG--DPR-----TQDSIIGTSERHKGEAAEREAQ  217
            LIL PP R  LFP A  A  D  + T G   P+     + DS  G  E HKGEA E+EA 
Sbjct  154  LILYPPSREILFPPAPLALVD--SKTGGVQKPKAGVLGSHDSATGAPENHKGEAVEQEAS  211

Query  218  NLVNNVATIAMKSATGKYGQAVPEDAEEVA----EPESL----ADVVDAAEGLDESVTA-  268
            N VN++A++A+ SA GK+ Q  P+DAE +     +P +L    AD  D A G     +  
Sbjct  212  NFVNSIASVAISSAAGKHPQGDPDDAEGMDDSVPDPTALATSAADAKDKAAGGKPDPSHD  271

Query  269  ESQKPMKRKVANATDEIMRTMNDITDTYEKFCNLLSPTPPFITYAPRLRLAGIMATVCLL  328
            +++ PM+  V +    +M  ++DITDT+E+F N LSPTPPF    PRLRLA ++  + L+
Sbjct  272  KTKVPMETAVWSKMRPVMHAISDITDTWERFANALSPTPPFPQDTPRLRLAAVLLPLLLI  331

Query  329  SLVVSSNFIIKATAFTLGLGFFGGPIINYSIEYLNRKIPNWREHLDLQQTLLKGIPTNAQ  388
            SL  SS   IK   F +G GFFG PII   + +LNRK PNW++ L+L+ TLLKG+PTNAQ
Sbjct  332  SLFTSSYMFIKGVTFGVGFGFFGDPIITRGLAWLNRKYPNWQKLLELRNTLLKGVPTNAQ  391

Query  389  LTLTLLRIGEINSSPLPPPPVTDDKESSSLIRSKARALIAS-------NTTPT---AQEN  438
            LT+TLLRIGE N +PLPPPP + +             L AS         +         
Sbjct  392  LTITLLRIGEANKAPLPPPPSSTEPPPDKPADLTDDDLRASAGADEPLGASDEEIDEAIA  451

Query  439  SGSTNSSTDHQTGPAPKQR---KKWFLKVLRFVRRTIATAIKSHGAFDRAMRIANSAHTR  495
                 ++T H+   A K++   KK   K+L F + T    +K+    DRA   A S H +
Sbjct  452  PDPEAAATKHEEIDADKEKKKKKKKGSKILGFFKGTTKGGVKTALGADRAKAKAGSEHAK  511

Query  496  TLLELLAKKDWFAASTGPLKFEAKFQRKRGTAVIDSAQEPPVMYFTTTQSASIDNLKLES  555
              L +L KK     ++GP++F+A+++ K+G   I S+  PPV+ FTT   A +D+L+LES
Sbjct  512  NRLGVLPKKKTAPQTSGPVEFDARYKGKKGHVYITSSATPPVLSFTT--DAGLDDLRLES  569

Query  556  QKKGSVLFQIPVSDITELKKTEGLGWKGKLIVELTAGSKEAADGLVISASESEQAYHLTG  615
            ++    L+ IPV+DI ELKK  GLGWKGKL+V      +E ADGLVI   +  Q+YHLT 
Sbjct  570  REDLHPLWTIPVADIKELKKVGGLGWKGKLVVGWALE-REVADGLVIV-DKPGQSYHLTA  627

Query  616  MKARDQLFNRLIAIDAQFWES  636
            M  RD+LFNRLIA+  Q WES
Sbjct  628  MPLRDELFNRLIAMGGQKWES  648



Lambda      K        H        a         alpha
   0.316    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 802285760


Query= TCONS_00020916

Length=650
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF32...  744     0.0  


>CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF3292).  This 
eukaryotic family of proteins has no known function.
Length=648

 Score = 744 bits (1923),  Expect = 0.0, Method: Composition-based stats.
 Identities = 281/640 (44%), Positives = 374/640 (58%), Gaps = 60/640 (9%)

Query  45   KPAPKAIAETLTPGLSDEDLWMLIRRFNK------AAANTASEDLDLNRAQDEQFPPEKL  98
              +P  I E L  GLS+EDLWMLIRRFNK      A  +     LDLN A +E+F P+KL
Sbjct  34   NESPDNIPEPLVGGLSNEDLWMLIRRFNKQIYHVKAIPDPPLGGLDLNIADEEEFSPDKL  93

Query  99   RITIERFYTSVVVELVGFCRHIARLRSWKEPRRTAVFCAVSYDTEFLMSELDLMRAVQGY  158
            R  +ER Y +V+V L+ F +HIARLRSW+EPRRTA FCAV                   Y
Sbjct  94   RANLERLYMTVIVGLIAFWKHIARLRSWREPRRTAAFCAV-------------------Y  134

Query  159  FIAWLLDVVIFTLSGLLIALILCPPLRRALFPGASPASTDLENSTPG--DPR-----TQD  211
            F+AWLLD+++ TL   LIALIL PP R  LFP A  A  D  + T G   P+     + D
Sbjct  135  FVAWLLDLLVPTLVAFLIALILYPPSREILFPPAPLALVD--SKTGGVQKPKAGVLGSHD  192

Query  212  SIIGTSERHKGEAAEREAQNLVNNVATIAMKSATGKYGQAVPEDAEEVA----EPESL--  265
            S  G  E HKGEA E+EA N VN++A++A+ SA GK+ Q  P+DAE +     +P +L  
Sbjct  193  SATGAPENHKGEAVEQEASNFVNSIASVAISSAAGKHPQGDPDDAEGMDDSVPDPTALAT  252

Query  266  --ADVVDAAEGLDESVTA-ESQKPMKRKVANATDEIMRTMNDITDTYEKFCNLLSPTPPF  322
              AD  D A G     +  +++ PM+  V +    +M  ++DITDT+E+F N LSPTPPF
Sbjct  253  SAADAKDKAAGGKPDPSHDKTKVPMETAVWSKMRPVMHAISDITDTWERFANALSPTPPF  312

Query  323  ITYAPRLRLAGIMATVCLLSLVVSSNFIIKATAFTLGLGFFGGPIINYSIEYLNRKIPNW  382
                PRLRLA ++  + L+SL  SS   IK   F +G GFFG PII   + +LNRK PNW
Sbjct  313  PQDTPRLRLAAVLLPLLLISLFTSSYMFIKGVTFGVGFGFFGDPIITRGLAWLNRKYPNW  372

Query  383  REHLDLQQTLLKGIPTNAQLTLTLLRIGEINSSPLPPPPVTDDKESSSLIRSKARALIAS  442
            ++ L+L+ TLLKG+PTNAQLT+TLLRIGE N +PLPPPP + +             L AS
Sbjct  373  QKLLELRNTLLKGVPTNAQLTITLLRIGEANKAPLPPPPSSTEPPPDKPADLTDDDLRAS  432

Query  443  -------NTTPT---AQENSGSTNSSTDHQTGPAPKQR---KKWFLKVLRFVRRTIATAI  489
                     +              ++T H+   A K++   KK   K+L F + T    +
Sbjct  433  AGADEPLGASDEEIDEAIAPDPEAAATKHEEIDADKEKKKKKKKGSKILGFFKGTTKGGV  492

Query  490  KSHGAFDRAMRIANSAHTRTLLELLAKKDWFAASTGPLKFEAKFQRKRGTAVIDSAQEPP  549
            K+    DRA   A S H +  L +L KK     ++GP++F+A+++ K+G   I S+  PP
Sbjct  493  KTALGADRAKAKAGSEHAKNRLGVLPKKKTAPQTSGPVEFDARYKGKKGHVYITSSATPP  552

Query  550  VMYFTTTQSASIDNLKLESQKKGSVLFQIPVSDITELKKTEGLGWKGKLIVELTAGSKEA  609
            V+ FTT   A +D+L+LES++    L+ IPV+DI ELKK  GLGWKGKL+V      +E 
Sbjct  553  VLSFTT--DAGLDDLRLESREDLHPLWTIPVADIKELKKVGGLGWKGKLVVGWALE-REV  609

Query  610  ADGLVISASESEQAYHLTGMKARDQLFNRLIAIDAQFWES  649
            ADGLVI   +  Q+YHLT M  RD+LFNRLIA+  Q WES
Sbjct  610  ADGLVIV-DKPGQSYHLTAMPLRDELFNRLIAMGGQKWES  648



Lambda      K        H        a         alpha
   0.316    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 821458030


Query= TCONS_00020912

Length=656
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF32...  769     0.0  


>CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF3292).  This 
eukaryotic family of proteins has no known function.
Length=648

 Score = 769 bits (1987),  Expect = 0.0, Method: Composition-based stats.
 Identities = 287/640 (45%), Positives = 380/640 (59%), Gaps = 54/640 (8%)

Query  45   KPAPKAIAETLTPGLSDEDLWMLIRRFNKQIYHVKAAANTASEDLDLNRAQDEQFPPEKL  104
              +P  I E L  GLS+EDLWMLIRRFNKQIYHVKA  +     LDLN A +E+F P+KL
Sbjct  34   NESPDNIPEPLVGGLSNEDLWMLIRRFNKQIYHVKAIPDPPLGGLDLNIADEEEFSPDKL  93

Query  105  RITIERFYTSVVVELVGFCRHIARLRSWKEPRRTAVFCAVSYDTEFLMSELDLMRAVQGY  164
            R  +ER Y +V+V L+ F +HIARLRSW+EPRRTA FCAV                   Y
Sbjct  94   RANLERLYMTVIVGLIAFWKHIARLRSWREPRRTAAFCAV-------------------Y  134

Query  165  FIAWLLDVVIFTLSGLLIALILCPPLRRALFPGASPASTDLENSTPG--DPR-----TQD  217
            F+AWLLD+++ TL   LIALIL PP R  LFP A  A  D  + T G   P+     + D
Sbjct  135  FVAWLLDLLVPTLVAFLIALILYPPSREILFPPAPLALVD--SKTGGVQKPKAGVLGSHD  192

Query  218  SIIGTSERHKGEAAEREAQNLVNNVATIAMKSATGKYGQAVPEDAEEVA----EPESL--  271
            S  G  E HKGEA E+EA N VN++A++A+ SA GK+ Q  P+DAE +     +P +L  
Sbjct  193  SATGAPENHKGEAVEQEASNFVNSIASVAISSAAGKHPQGDPDDAEGMDDSVPDPTALAT  252

Query  272  --ADVVDAAEGLDESVTA-ESQKPMKRKVANATDEIMRTMNDITDTYEKFCNLLSPTPPF  328
              AD  D A G     +  +++ PM+  V +    +M  ++DITDT+E+F N LSPTPPF
Sbjct  253  SAADAKDKAAGGKPDPSHDKTKVPMETAVWSKMRPVMHAISDITDTWERFANALSPTPPF  312

Query  329  ITYAPRLRLAGIMATVCLLSLVVSSNFIIKATAFTLGLGFFGGPIINYSIEYLNRKIPNW  388
                PRLRLA ++  + L+SL  SS   IK   F +G GFFG PII   + +LNRK PNW
Sbjct  313  PQDTPRLRLAAVLLPLLLISLFTSSYMFIKGVTFGVGFGFFGDPIITRGLAWLNRKYPNW  372

Query  389  REHLDLQQTLLKGIPTNAQLTLTLLRIGEINSSPLPPPPVTDDKESSSLIRSKARALIAS  448
            ++ L+L+ TLLKG+PTNAQLT+TLLRIGE N +PLPPPP + +             L AS
Sbjct  373  QKLLELRNTLLKGVPTNAQLTITLLRIGEANKAPLPPPPSSTEPPPDKPADLTDDDLRAS  432

Query  449  -------NTTPT---AQENSGSTNSSTDHQTGPAPKQR---KKWFLKVLRFVRRTIATAI  495
                     +              ++T H+   A K++   KK   K+L F + T    +
Sbjct  433  AGADEPLGASDEEIDEAIAPDPEAAATKHEEIDADKEKKKKKKKGSKILGFFKGTTKGGV  492

Query  496  KSHGAFDRAMRIANSAHTRTLLELLAKKDWFAASTGPLKFEAKFQRKRGTAVIDSAQEPP  555
            K+    DRA   A S H +  L +L KK     ++GP++F+A+++ K+G   I S+  PP
Sbjct  493  KTALGADRAKAKAGSEHAKNRLGVLPKKKTAPQTSGPVEFDARYKGKKGHVYITSSATPP  552

Query  556  VMYFTTTQSASIDNLKLESQKKGSVLFQIPVSDITELKKTEGLGWKGKLIVELTAGSKEA  615
            V+ FTT   A +D+L+LES++    L+ IPV+DI ELKK  GLGWKGKL+V      +E 
Sbjct  553  VLSFTT--DAGLDDLRLESREDLHPLWTIPVADIKELKKVGGLGWKGKLVVGWALE-REV  609

Query  616  ADGLVISASESEQAYHLTGMKARDQLFNRLIAIDAQFWES  655
            ADGLVI   +  Q+YHLT M  RD+LFNRLIA+  Q WES
Sbjct  610  ADGLVIV-DKPGQSYHLTAMPLRDELFNRLIAMGGQKWES  648



Lambda      K        H        a         alpha
   0.317    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 830306770


Query= TCONS_00020913

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF32...  753     0.0  


>CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF3292).  This 
eukaryotic family of proteins has no known function.
Length=648

 Score = 753 bits (1946),  Expect = 0.0, Method: Composition-based stats.
 Identities = 275/600 (46%), Positives = 366/600 (61%), Gaps = 35/600 (6%)

Query  1    MLIRRFNKQIYHVKAAANTASEDLDLNRAQDEQFPPEKLRITIERFYTSVVVELVGFCRH  60
            MLIRRFNKQIYHVKA  +     LDLN A +E+F P+KLR  +ER Y +V+V L+ F +H
Sbjct  55   MLIRRFNKQIYHVKAIPDPPLGGLDLNIADEEEFSPDKLRANLERLYMTVIVGLIAFWKH  114

Query  61   IARLRSWKEPRRTAVFCAGYFIAWLLDVVIFTLSGLLIALILCPPLRRALFPGASPASTD  120
            IARLRSW+EPRRTA FCA YF+AWLLD+++ TL   LIALIL PP R  LFP A  A  D
Sbjct  115  IARLRSWREPRRTAAFCAVYFVAWLLDLLVPTLVAFLIALILYPPSREILFPPAPLALVD  174

Query  121  LENSTPG--DPR-----TQDSIIGTSERHKGEAAEREAQNLVNNVATIAMKSATGKYGQA  173
              + T G   P+     + DS  G  E HKGEA E+EA N VN++A++A+ SA GK+ Q 
Sbjct  175  --SKTGGVQKPKAGVLGSHDSATGAPENHKGEAVEQEASNFVNSIASVAISSAAGKHPQG  232

Query  174  VPEDAEEVA----EPESL----ADVVDAAEGLDESVTA-ESQKPMKRKVANATDEIMRTM  224
             P+DAE +     +P +L    AD  D A G     +  +++ PM+  V +    +M  +
Sbjct  233  DPDDAEGMDDSVPDPTALATSAADAKDKAAGGKPDPSHDKTKVPMETAVWSKMRPVMHAI  292

Query  225  NDITDTYEKFCNLLSPTPPFITYAPRLRLAGIMATVCLLSLVVSSNFIIKATAFTLGLGF  284
            +DITDT+E+F N LSPTPPF    PRLRLA ++  + L+SL  SS   IK   F +G GF
Sbjct  293  SDITDTWERFANALSPTPPFPQDTPRLRLAAVLLPLLLISLFTSSYMFIKGVTFGVGFGF  352

Query  285  FGGPIINYSIEYLNRKIPNWREHLDLQQTLLKGIPTNAQLTLTLLRIGEINSSPLPPPPV  344
            FG PII   + +LNRK PNW++ L+L+ TLLKG+PTNAQLT+TLLRIGE N +PLPPPP 
Sbjct  353  FGDPIITRGLAWLNRKYPNWQKLLELRNTLLKGVPTNAQLTITLLRIGEANKAPLPPPPS  412

Query  345  TDDKESSSLIRSKARALIAS-------NTTPT---AQENSGSTNSSTDHQTGPAPKQR--  392
            + +             L AS         +              ++T H+   A K++  
Sbjct  413  STEPPPDKPADLTDDDLRASAGADEPLGASDEEIDEAIAPDPEAAATKHEEIDADKEKKK  472

Query  393  -KKWFLKVLRFVRRTIATAIKSHGAFDRAMRIANSAHTRTLLELLAKKDWFAASTGPLKF  451
             KK   K+L F + T    +K+    DRA   A S H +  L +L KK     ++GP++F
Sbjct  473  KKKKGSKILGFFKGTTKGGVKTALGADRAKAKAGSEHAKNRLGVLPKKKTAPQTSGPVEF  532

Query  452  EAKFQRKRGTAVIDSAQEPPVMYFTTTQSASIDNLKLESQKKGSVLFQIPVSDITELKKT  511
            +A+++ K+G   I S+  PPV+ FTT   A +D+L+LES++    L+ IPV+DI ELKK 
Sbjct  533  DARYKGKKGHVYITSSATPPVLSFTT--DAGLDDLRLESREDLHPLWTIPVADIKELKKV  590

Query  512  EGLGWKGKLIVELTAGSKEAADGLVISASESEQAYHLTGMKARDQLFNRLIAIDAQFWES  571
             GLGWKGKL+V      +E ADGLVI   +  Q+YHLT M  RD+LFNRLIA+  Q WES
Sbjct  591  GGLGWKGKLVVGWALE-REVADGLVIV-DKPGQSYHLTAMPLRDELFNRLIAMGGQKWES  648



Lambda      K        H        a         alpha
   0.317    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00026314

Length=656
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF32...  769     0.0  


>CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF3292).  This 
eukaryotic family of proteins has no known function.
Length=648

 Score = 769 bits (1987),  Expect = 0.0, Method: Composition-based stats.
 Identities = 287/640 (45%), Positives = 380/640 (59%), Gaps = 54/640 (8%)

Query  45   KPAPKAIAETLTPGLSDEDLWMLIRRFNKQIYHVKAAANTASEDLDLNRAQDEQFPPEKL  104
              +P  I E L  GLS+EDLWMLIRRFNKQIYHVKA  +     LDLN A +E+F P+KL
Sbjct  34   NESPDNIPEPLVGGLSNEDLWMLIRRFNKQIYHVKAIPDPPLGGLDLNIADEEEFSPDKL  93

Query  105  RITIERFYTSVVVELVGFCRHIARLRSWKEPRRTAVFCAVSYDTEFLMSELDLMRAVQGY  164
            R  +ER Y +V+V L+ F +HIARLRSW+EPRRTA FCAV                   Y
Sbjct  94   RANLERLYMTVIVGLIAFWKHIARLRSWREPRRTAAFCAV-------------------Y  134

Query  165  FIAWLLDVVIFTLSGLLIALILCPPLRRALFPGASPASTDLENSTPG--DPR-----TQD  217
            F+AWLLD+++ TL   LIALIL PP R  LFP A  A  D  + T G   P+     + D
Sbjct  135  FVAWLLDLLVPTLVAFLIALILYPPSREILFPPAPLALVD--SKTGGVQKPKAGVLGSHD  192

Query  218  SIIGTSERHKGEAAEREAQNLVNNVATIAMKSATGKYGQAVPEDAEEVA----EPESL--  271
            S  G  E HKGEA E+EA N VN++A++A+ SA GK+ Q  P+DAE +     +P +L  
Sbjct  193  SATGAPENHKGEAVEQEASNFVNSIASVAISSAAGKHPQGDPDDAEGMDDSVPDPTALAT  252

Query  272  --ADVVDAAEGLDESVTA-ESQKPMKRKVANATDEIMRTMNDITDTYEKFCNLLSPTPPF  328
              AD  D A G     +  +++ PM+  V +    +M  ++DITDT+E+F N LSPTPPF
Sbjct  253  SAADAKDKAAGGKPDPSHDKTKVPMETAVWSKMRPVMHAISDITDTWERFANALSPTPPF  312

Query  329  ITYAPRLRLAGIMATVCLLSLVVSSNFIIKATAFTLGLGFFGGPIINYSIEYLNRKIPNW  388
                PRLRLA ++  + L+SL  SS   IK   F +G GFFG PII   + +LNRK PNW
Sbjct  313  PQDTPRLRLAAVLLPLLLISLFTSSYMFIKGVTFGVGFGFFGDPIITRGLAWLNRKYPNW  372

Query  389  REHLDLQQTLLKGIPTNAQLTLTLLRIGEINSSPLPPPPVTDDKESSSLIRSKARALIAS  448
            ++ L+L+ TLLKG+PTNAQLT+TLLRIGE N +PLPPPP + +             L AS
Sbjct  373  QKLLELRNTLLKGVPTNAQLTITLLRIGEANKAPLPPPPSSTEPPPDKPADLTDDDLRAS  432

Query  449  -------NTTPT---AQENSGSTNSSTDHQTGPAPKQR---KKWFLKVLRFVRRTIATAI  495
                     +              ++T H+   A K++   KK   K+L F + T    +
Sbjct  433  AGADEPLGASDEEIDEAIAPDPEAAATKHEEIDADKEKKKKKKKGSKILGFFKGTTKGGV  492

Query  496  KSHGAFDRAMRIANSAHTRTLLELLAKKDWFAASTGPLKFEAKFQRKRGTAVIDSAQEPP  555
            K+    DRA   A S H +  L +L KK     ++GP++F+A+++ K+G   I S+  PP
Sbjct  493  KTALGADRAKAKAGSEHAKNRLGVLPKKKTAPQTSGPVEFDARYKGKKGHVYITSSATPP  552

Query  556  VMYFTTTQSASIDNLKLESQKKGSVLFQIPVSDITELKKTEGLGWKGKLIVELTAGSKEA  615
            V+ FTT   A +D+L+LES++    L+ IPV+DI ELKK  GLGWKGKL+V      +E 
Sbjct  553  VLSFTT--DAGLDDLRLESREDLHPLWTIPVADIKELKKVGGLGWKGKLVVGWALE-REV  609

Query  616  ADGLVISASESEQAYHLTGMKARDQLFNRLIAIDAQFWES  655
            ADGLVI   +  Q+YHLT M  RD+LFNRLIA+  Q WES
Sbjct  610  ADGLVIV-DKPGQSYHLTAMPLRDELFNRLIAMGGQKWES  648



Lambda      K        H        a         alpha
   0.317    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 830306770


Query= TCONS_00026315

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF32...  594     0.0  


>CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF3292).  This 
eukaryotic family of proteins has no known function.
Length=648

 Score = 594 bits (1533),  Expect = 0.0, Method: Composition-based stats.
 Identities = 225/521 (43%), Positives = 306/521 (59%), Gaps = 35/521 (7%)

Query  13   YFIAWLLDVVIFTLSGLLIALILCPPLRRALFPGASPASTDLENSTPG--DPR-----TQ  65
            YF+AWLLD+++ TL   LIALIL PP R  LFP A  A  D  + T G   P+     + 
Sbjct  134  YFVAWLLDLLVPTLVAFLIALILYPPSREILFPPAPLALVD--SKTGGVQKPKAGVLGSH  191

Query  66   DSIIGTSERHKGEAAEREAQNLVNNVATIAMKSATGKYGQAVPEDAEEVA----EPESL-  120
            DS  G  E HKGEA E+EA N VN++A++A+ SA GK+ Q  P+DAE +     +P +L 
Sbjct  192  DSATGAPENHKGEAVEQEASNFVNSIASVAISSAAGKHPQGDPDDAEGMDDSVPDPTALA  251

Query  121  ---ADVVDAAEGLDESVTA-ESQKPMKRKVANATDEIMRTMNDITDTYEKFCNLLSPTPP  176
               AD  D A G     +  +++ PM+  V +    +M  ++DITDT+E+F N LSPTPP
Sbjct  252  TSAADAKDKAAGGKPDPSHDKTKVPMETAVWSKMRPVMHAISDITDTWERFANALSPTPP  311

Query  177  FITYAPRLRLAGIMATVCLLSLVVSSNFIIKATAFTLGLGFFGGPIINYSIEYLNRKIPN  236
            F    PRLRLA ++  + L+SL  SS   IK   F +G GFFG PII   + +LNRK PN
Sbjct  312  FPQDTPRLRLAAVLLPLLLISLFTSSYMFIKGVTFGVGFGFFGDPIITRGLAWLNRKYPN  371

Query  237  WREHLDLQQTLLKGIPTNAQLTLTLLRIGEINSSPLPPPPVTDDKESSSLIRSKARALIA  296
            W++ L+L+ TLLKG+PTNAQLT+TLLRIGE N +PLPPPP + +             L A
Sbjct  372  WQKLLELRNTLLKGVPTNAQLTITLLRIGEANKAPLPPPPSSTEPPPDKPADLTDDDLRA  431

Query  297  S-------NTTPT---AQENSGSTNSSTDHQTGPAPKQR---KKWFLKVLRFVRRTIATA  343
            S         +              ++T H+   A K++   KK   K+L F + T    
Sbjct  432  SAGADEPLGASDEEIDEAIAPDPEAAATKHEEIDADKEKKKKKKKGSKILGFFKGTTKGG  491

Query  344  IKSHGAFDRAMRIANSAHTRTLLELLAKKDWFAASTGPLKFEAKFQRKRGTAVIDSAQEP  403
            +K+    DRA   A S H +  L +L KK     ++GP++F+A+++ K+G   I S+  P
Sbjct  492  VKTALGADRAKAKAGSEHAKNRLGVLPKKKTAPQTSGPVEFDARYKGKKGHVYITSSATP  551

Query  404  PVMYFTTTQSASIDNLKLESQKKGSVLFQIPVSDITELKKTEGLGWKGKLIVELTAGSKE  463
            PV+ FTT   A +D+L+LES++    L+ IPV+DI ELKK  GLGWKGKL+V      +E
Sbjct  552  PVLSFTT--DAGLDDLRLESREDLHPLWTIPVADIKELKKVGGLGWKGKLVVGWALE-RE  608

Query  464  AADGLVISASESEQAYHLTGMKARDQLFNRLIAIDAQFWES  504
             ADGLVI   +  Q+YHLT M  RD+LFNRLIA+  Q WES
Sbjct  609  VADGLVIV-DKPGQSYHLTAMPLRDELFNRLIAMGGQKWES  648



Lambda      K        H        a         alpha
   0.316    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00020914

Length=391
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF32...  474     2e-164


>CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF3292).  This 
eukaryotic family of proteins has no known function.
Length=648

 Score = 474 bits (1221),  Expect = 2e-164, Method: Composition-based stats.
 Identities = 171/348 (49%), Positives = 223/348 (64%), Gaps = 18/348 (5%)

Query  45   KPAPKAIAETLTPGLSDEDLWMLIRRFNKQIYHVKAAANTASEDLDLNRAQDEQFPPEKL  104
              +P  I E L  GLS+EDLWMLIRRFNKQIYHVKA  +     LDLN A +E+F P+KL
Sbjct  34   NESPDNIPEPLVGGLSNEDLWMLIRRFNKQIYHVKAIPDPPLGGLDLNIADEEEFSPDKL  93

Query  105  RITIERFYTSVVVELVGFCRHIARLRSWKEPRRTAVFCAGYFIAWLLDVVIFTLSGLLIA  164
            R  +ER Y +V+V L+ F +HIARLRSW+EPRRTA FCA YF+AWLLD+++ TL   LIA
Sbjct  94   RANLERLYMTVIVGLIAFWKHIARLRSWREPRRTAAFCAVYFVAWLLDLLVPTLVAFLIA  153

Query  165  LILCPPLRRALFPGASPASTDLENSTPG--DPR-----TQDSIIGTSERHKGEAAEREAQ  217
            LIL PP R  LFP A  A  D  + T G   P+     + DS  G  E HKGEA E+EA 
Sbjct  154  LILYPPSREILFPPAPLALVD--SKTGGVQKPKAGVLGSHDSATGAPENHKGEAVEQEAS  211

Query  218  NLVNNVATIAMKSATGKYGQAVPEDAEEVA----EPESL----ADVVDAAEGLDESVTA-  268
            N VN++A++A+ SA GK+ Q  P+DAE +     +P +L    AD  D A G     +  
Sbjct  212  NFVNSIASVAISSAAGKHPQGDPDDAEGMDDSVPDPTALATSAADAKDKAAGGKPDPSHD  271

Query  269  ESQKPMKRKVANATDEIMRTMNDITDTYEKFCNLLSPTPPFITYAPRLRLAGIMATVCLL  328
            +++ PM+  V +    +M  ++DITDT+E+F N LSPTPPF    PRLRLA ++  + L+
Sbjct  272  KTKVPMETAVWSKMRPVMHAISDITDTWERFANALSPTPPFPQDTPRLRLAAVLLPLLLI  331

Query  329  SLVVSSNFIIKATAFTLGLGFFGGPIINYSIEYLNRKIPNWREHLDLQ  376
            SL  SS   IK   F +G GFFG PII   + +LNRK PNW++ L+L+
Sbjct  332  SLFTSSYMFIKGVTFGVGFGFFGDPIITRGLAWLNRKYPNWQKLLELR  379



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00020915

Length=637
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF32...  776     0.0  


>CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF3292).  This 
eukaryotic family of proteins has no known function.
Length=648

 Score = 776 bits (2005),  Expect = 0.0, Method: Composition-based stats.
 Identities = 286/621 (46%), Positives = 379/621 (61%), Gaps = 35/621 (6%)

Query  45   KPAPKAIAETLTPGLSDEDLWMLIRRFNKQIYHVKAAANTASEDLDLNRAQDEQFPPEKL  104
              +P  I E L  GLS+EDLWMLIRRFNKQIYHVKA  +     LDLN A +E+F P+KL
Sbjct  34   NESPDNIPEPLVGGLSNEDLWMLIRRFNKQIYHVKAIPDPPLGGLDLNIADEEEFSPDKL  93

Query  105  RITIERFYTSVVVELVGFCRHIARLRSWKEPRRTAVFCAGYFIAWLLDVVIFTLSGLLIA  164
            R  +ER Y +V+V L+ F +HIARLRSW+EPRRTA FCA YF+AWLLD+++ TL   LIA
Sbjct  94   RANLERLYMTVIVGLIAFWKHIARLRSWREPRRTAAFCAVYFVAWLLDLLVPTLVAFLIA  153

Query  165  LILCPPLRRALFPGASPASTDLENSTPG--DPR-----TQDSIIGTSERHKGEAAEREAQ  217
            LIL PP R  LFP A  A  D  + T G   P+     + DS  G  E HKGEA E+EA 
Sbjct  154  LILYPPSREILFPPAPLALVD--SKTGGVQKPKAGVLGSHDSATGAPENHKGEAVEQEAS  211

Query  218  NLVNNVATIAMKSATGKYGQAVPEDAEEVA----EPESL----ADVVDAAEGLDESVTA-  268
            N VN++A++A+ SA GK+ Q  P+DAE +     +P +L    AD  D A G     +  
Sbjct  212  NFVNSIASVAISSAAGKHPQGDPDDAEGMDDSVPDPTALATSAADAKDKAAGGKPDPSHD  271

Query  269  ESQKPMKRKVANATDEIMRTMNDITDTYEKFCNLLSPTPPFITYAPRLRLAGIMATVCLL  328
            +++ PM+  V +    +M  ++DITDT+E+F N LSPTPPF    PRLRLA ++  + L+
Sbjct  272  KTKVPMETAVWSKMRPVMHAISDITDTWERFANALSPTPPFPQDTPRLRLAAVLLPLLLI  331

Query  329  SLVVSSNFIIKATAFTLGLGFFGGPIINYSIEYLNRKIPNWREHLDLQQTLLKGIPTNAQ  388
            SL  SS   IK   F +G GFFG PII   + +LNRK PNW++ L+L+ TLLKG+PTNAQ
Sbjct  332  SLFTSSYMFIKGVTFGVGFGFFGDPIITRGLAWLNRKYPNWQKLLELRNTLLKGVPTNAQ  391

Query  389  LTLTLLRIGEINSSPLPPPPVTDDKESSSLIRSKARALIAS-------NTTPT---AQEN  438
            LT+TLLRIGE N +PLPPPP + +             L AS         +         
Sbjct  392  LTITLLRIGEANKAPLPPPPSSTEPPPDKPADLTDDDLRASAGADEPLGASDEEIDEAIA  451

Query  439  SGSTNSSTDHQTGPAPKQR---KKWFLKVLRFVRRTIATAIKSHGAFDRAMRIANSAHTR  495
                 ++T H+   A K++   KK   K+L F + T    +K+    DRA   A S H +
Sbjct  452  PDPEAAATKHEEIDADKEKKKKKKKGSKILGFFKGTTKGGVKTALGADRAKAKAGSEHAK  511

Query  496  TLLELLAKKDWFAASTGPLKFEAKFQRKRGTAVIDSAQEPPVMYFTTTQSASIDNLKLES  555
              L +L KK     ++GP++F+A+++ K+G   I S+  PPV+ FTT   A +D+L+LES
Sbjct  512  NRLGVLPKKKTAPQTSGPVEFDARYKGKKGHVYITSSATPPVLSFTT--DAGLDDLRLES  569

Query  556  QKKGSVLFQIPVSDITELKKTEGLGWKGKLIVELTAGSKEAADGLVISASESEQAYHLTG  615
            ++    L+ IPV+DI ELKK  GLGWKGKL+V      +E ADGLVI   +  Q+YHLT 
Sbjct  570  REDLHPLWTIPVADIKELKKVGGLGWKGKLVVGWALE-REVADGLVIV-DKPGQSYHLTA  627

Query  616  MKARDQLFNRLIAIDAQFWES  636
            M  RD+LFNRLIA+  Q WES
Sbjct  628  MPLRDELFNRLIAMGGQKWES  648



Lambda      K        H        a         alpha
   0.316    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 802285760


Query= TCONS_00026316

Length=356


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0686    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00026317

Length=391
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF32...  474     2e-164


>CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF3292).  This 
eukaryotic family of proteins has no known function.
Length=648

 Score = 474 bits (1221),  Expect = 2e-164, Method: Composition-based stats.
 Identities = 171/348 (49%), Positives = 223/348 (64%), Gaps = 18/348 (5%)

Query  45   KPAPKAIAETLTPGLSDEDLWMLIRRFNKQIYHVKAAANTASEDLDLNRAQDEQFPPEKL  104
              +P  I E L  GLS+EDLWMLIRRFNKQIYHVKA  +     LDLN A +E+F P+KL
Sbjct  34   NESPDNIPEPLVGGLSNEDLWMLIRRFNKQIYHVKAIPDPPLGGLDLNIADEEEFSPDKL  93

Query  105  RITIERFYTSVVVELVGFCRHIARLRSWKEPRRTAVFCAGYFIAWLLDVVIFTLSGLLIA  164
            R  +ER Y +V+V L+ F +HIARLRSW+EPRRTA FCA YF+AWLLD+++ TL   LIA
Sbjct  94   RANLERLYMTVIVGLIAFWKHIARLRSWREPRRTAAFCAVYFVAWLLDLLVPTLVAFLIA  153

Query  165  LILCPPLRRALFPGASPASTDLENSTPG--DPR-----TQDSIIGTSERHKGEAAEREAQ  217
            LIL PP R  LFP A  A  D  + T G   P+     + DS  G  E HKGEA E+EA 
Sbjct  154  LILYPPSREILFPPAPLALVD--SKTGGVQKPKAGVLGSHDSATGAPENHKGEAVEQEAS  211

Query  218  NLVNNVATIAMKSATGKYGQAVPEDAEEVA----EPESL----ADVVDAAEGLDESVTA-  268
            N VN++A++A+ SA GK+ Q  P+DAE +     +P +L    AD  D A G     +  
Sbjct  212  NFVNSIASVAISSAAGKHPQGDPDDAEGMDDSVPDPTALATSAADAKDKAAGGKPDPSHD  271

Query  269  ESQKPMKRKVANATDEIMRTMNDITDTYEKFCNLLSPTPPFITYAPRLRLAGIMATVCLL  328
            +++ PM+  V +    +M  ++DITDT+E+F N LSPTPPF    PRLRLA ++  + L+
Sbjct  272  KTKVPMETAVWSKMRPVMHAISDITDTWERFANALSPTPPFPQDTPRLRLAAVLLPLLLI  331

Query  329  SLVVSSNFIIKATAFTLGLGFFGGPIINYSIEYLNRKIPNWREHLDLQ  376
            SL  SS   IK   F +G GFFG PII   + +LNRK PNW++ L+L+
Sbjct  332  SLFTSSYMFIKGVTFGVGFGFFGDPIITRGLAWLNRKYPNWQKLLELR  379



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00026318

Length=356


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00026319

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF32...  493     9e-172


>CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF3292).  This 
eukaryotic family of proteins has no known function.
Length=648

 Score = 493 bits (1271),  Expect = 9e-172, Method: Composition-based stats.
 Identities = 181/431 (42%), Positives = 250/431 (58%), Gaps = 26/431 (6%)

Query  1    MKSATGKYGQAVPEDAEEVA----EPESL----ADVVDAAEGLDESVTA-ESQKPMKRKV  51
            + SA GK+ Q  P+DAE +     +P +L    AD  D A G     +  +++ PM+  V
Sbjct  222  ISSAAGKHPQGDPDDAEGMDDSVPDPTALATSAADAKDKAAGGKPDPSHDKTKVPMETAV  281

Query  52   ANATDEIMRTMNDITDTYEKFCNLLSPTPPFITYAPRLRLAGIMATVCLLSLVVSSNFII  111
             +    +M  ++DITDT+E+F N LSPTPPF    PRLRLA ++  + L+SL  SS   I
Sbjct  282  WSKMRPVMHAISDITDTWERFANALSPTPPFPQDTPRLRLAAVLLPLLLISLFTSSYMFI  341

Query  112  KATAFTLGLGFFGGPIINYSIEYLNRKIPNWREHLDLQQTLLKGIPTNAQLTLTLLRIGE  171
            K   F +G GFFG PII   + +LNRK PNW++ L+L+ TLLKG+PTNAQLT+TLLRIGE
Sbjct  342  KGVTFGVGFGFFGDPIITRGLAWLNRKYPNWQKLLELRNTLLKGVPTNAQLTITLLRIGE  401

Query  172  INSSPLPPPPVTDDKESSSLIRSKARALIAS-------NTTPT---AQENSGSTNSSTDH  221
             N +PLPPPP + +             L AS         +              ++T H
Sbjct  402  ANKAPLPPPPSSTEPPPDKPADLTDDDLRASAGADEPLGASDEEIDEAIAPDPEAAATKH  461

Query  222  QTGPAPKQR---KKWFLKVLRFVRRTIATAIKSHGAFDRAMRIANSAHTRTLLELLAKKD  278
            +   A K++   KK   K+L F + T    +K+    DRA   A S H +  L +L KK 
Sbjct  462  EEIDADKEKKKKKKKGSKILGFFKGTTKGGVKTALGADRAKAKAGSEHAKNRLGVLPKKK  521

Query  279  WFAASTGPLKFEAKFQRKRGTAVIDSAQEPPVMYFTTTQSASIDNLKLESQKKGSVLFQI  338
                ++GP++F+A+++ K+G   I S+  PPV+ FTT   A +D+L+LES++    L+ I
Sbjct  522  TAPQTSGPVEFDARYKGKKGHVYITSSATPPVLSFTT--DAGLDDLRLESREDLHPLWTI  579

Query  339  PVSDITELKKTEGLGWKGKLIVELTAGSKEAADGLVISASESEQAYHLTGMKARDQLFNR  398
            PV+DI ELKK  GLGWKGKL+V      +E ADGLVI   +  Q+YHLT M  RD+LFNR
Sbjct  580  PVADIKELKKVGGLGWKGKLVVGWALE-REVADGLVIV-DKPGQSYHLTAMPLRDELFNR  637

Query  399  LIAIDAQFWES  409
            LIA+  Q WES
Sbjct  638  LIAMGGQKWES  648



Lambda      K        H        a         alpha
   0.315    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00026320

Length=631
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF32...  750     0.0  


>CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF3292).  This 
eukaryotic family of proteins has no known function.
Length=648

 Score = 750 bits (1940),  Expect = 0.0, Method: Composition-based stats.
 Identities = 280/621 (45%), Positives = 373/621 (60%), Gaps = 41/621 (7%)

Query  45   KPAPKAIAETLTPGLSDEDLWMLIRRFNK------AAANTASEDLDLNRAQDEQFPPEKL  98
              +P  I E L  GLS+EDLWMLIRRFNK      A  +     LDLN A +E+F P+KL
Sbjct  34   NESPDNIPEPLVGGLSNEDLWMLIRRFNKQIYHVKAIPDPPLGGLDLNIADEEEFSPDKL  93

Query  99   RITIERFYTSVVVELVGFCRHIARLRSWKEPRRTAVFCAGYFIAWLLDVVIFTLSGLLIA  158
            R  +ER Y +V+V L+ F +HIARLRSW+EPRRTA FCA YF+AWLLD+++ TL   LIA
Sbjct  94   RANLERLYMTVIVGLIAFWKHIARLRSWREPRRTAAFCAVYFVAWLLDLLVPTLVAFLIA  153

Query  159  LILCPPLRRALFPGASPASTDLENSTPG--DPR-----TQDSIIGTSERHKGEAAEREAQ  211
            LIL PP R  LFP A  A  D  + T G   P+     + DS  G  E HKGEA E+EA 
Sbjct  154  LILYPPSREILFPPAPLALVD--SKTGGVQKPKAGVLGSHDSATGAPENHKGEAVEQEAS  211

Query  212  NLVNNVATIAMKSATGKYGQAVPEDAEEVA----EPESL----ADVVDAAEGLDESVTA-  262
            N VN++A++A+ SA GK+ Q  P+DAE +     +P +L    AD  D A G     +  
Sbjct  212  NFVNSIASVAISSAAGKHPQGDPDDAEGMDDSVPDPTALATSAADAKDKAAGGKPDPSHD  271

Query  263  ESQKPMKRKVANATDEIMRTMNDITDTYEKFCNLLSPTPPFITYAPRLRLAGIMATVCLL  322
            +++ PM+  V +    +M  ++DITDT+E+F N LSPTPPF    PRLRLA ++  + L+
Sbjct  272  KTKVPMETAVWSKMRPVMHAISDITDTWERFANALSPTPPFPQDTPRLRLAAVLLPLLLI  331

Query  323  SLVVSSNFIIKATAFTLGLGFFGGPIINYSIEYLNRKIPNWREHLDLQQTLLKGIPTNAQ  382
            SL  SS   IK   F +G GFFG PII   + +LNRK PNW++ L+L+ TLLKG+PTNAQ
Sbjct  332  SLFTSSYMFIKGVTFGVGFGFFGDPIITRGLAWLNRKYPNWQKLLELRNTLLKGVPTNAQ  391

Query  383  LTLTLLRIGEINSSPLPPPPVTDDKESSSLIRSKARALIAS-------NTTPT---AQEN  432
            LT+TLLRIGE N +PLPPPP + +             L AS         +         
Sbjct  392  LTITLLRIGEANKAPLPPPPSSTEPPPDKPADLTDDDLRASAGADEPLGASDEEIDEAIA  451

Query  433  SGSTNSSTDHQTGPAPKQR---KKWFLKVLRFVRRTIATAIKSHGAFDRAMRIANSAHTR  489
                 ++T H+   A K++   KK   K+L F + T    +K+    DRA   A S H +
Sbjct  452  PDPEAAATKHEEIDADKEKKKKKKKGSKILGFFKGTTKGGVKTALGADRAKAKAGSEHAK  511

Query  490  TLLELLAKKDWFAASTGPLKFEAKFQRKRGTAVIDSAQEPPVMYFTTTQSASIDNLKLES  549
              L +L KK     ++GP++F+A+++ K+G   I S+  PPV+ FTT   A +D+L+LES
Sbjct  512  NRLGVLPKKKTAPQTSGPVEFDARYKGKKGHVYITSSATPPVLSFTT--DAGLDDLRLES  569

Query  550  QKKGSVLFQIPVSDITELKKTEGLGWKGKLIVELTAGSKEAADGLVISASESEQAYHLTG  609
            ++    L+ IPV+DI ELKK  GLGWKGKL+V      +E ADGLVI   +  Q+YHLT 
Sbjct  570  REDLHPLWTIPVADIKELKKVGGLGWKGKLVVGWALE-REVADGLVIV-DKPGQSYHLTA  627

Query  610  MKARDQLFNRLIAIDAQFWES  630
            M  RD+LFNRLIA+  Q WES
Sbjct  628  MPLRDELFNRLIAMGGQKWES  648



Lambda      K        H        a         alpha
   0.316    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 793437020


Query= TCONS_00026321

Length=356


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00020917

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00020918

Length=246


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00020919

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00020920

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            106     1e-27


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 106 bits (266),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 45/157 (29%), Positives = 77/157 (49%), Gaps = 0/157 (0%)

Query  64   VAFLTFLTPLASSMVAPAGGLVIETFNITSESLASFVVSIYLVGFAVGPLVLGPLSEIYG  123
            +    FL  L  S++ PA  L++      S +    +++++ +G+A+   + G LS+ +G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  124  RLRIYQACNAVFIVWNVACAVAPNVGSLLAFRLFAGIAGSCPLTLGAGSIADLFVPEERG  183
            R R+      +F +  +    A ++  LL  R+  G+            IAD F PEERG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  184  AAMSIYSMGPLMGPVVGPIAGGYLAEAAGWRWIFWVI  220
             A+ + S G  +G  +GP+ GG LA   GWR  F ++
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLIL  157



Lambda      K        H        a         alpha
   0.323    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00020921

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            130     2e-34


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 130 bits (329),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 81/387 (21%), Positives = 143/387 (37%), Gaps = 44/387 (11%)

Query  64   VAFLTFLTPLASSMVAPAGGLVIETFNITSESLASFVVSIYLVGFAVGPLVLGPLSEIYG  123
            +    FL  L  S++ PA  L++      S +    +++++ +G+A+   + G LS+ +G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  124  RLRIYQACNAVFIVWNVACAVAPNVGSLLAFRLFAGIAGSCPLTLGAGSIADLFVPEERG  183
            R R+      +F +  +    A ++  LL  R+  G+            IAD F PEERG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  184  AAMSIYSMGPLMGPVVGPIAGGYLAEAAGWRWIFWVISMAGGAVFAFSLVFQTETYEPVL  243
             A+ + S G  +G  +GP+ GG LA   GWR  F ++++         L+ +        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES---  177

Query  244  LQRRVDQLRKEAGDMTLRSKLAPNISARDNFIRSIVRPTKMLFLSPIVAIFSVYLGIVYG  303
                                        +    S++   K L   P++ +    L    G
Sbjct  178  ----------------------KRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLF--G  213

Query  304  YLYLLFTTITPVYQTTYQFSQGAAGLTYLGIGVGSLIGLLIFGTISDKILIYLTKQNDGV  363
            + +    T  P+YQ     S   AGL     G+   IG L+ G +SD++           
Sbjct  214  FAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRL-----------  262

Query  364  REPEFRMPPLIPGSLFVPIGLFWYGWSAEKQLHWMMPIVGTGFVGFGMLASFLPIQTYLV  423
                 R+   +   +   +GL     +       +  +     +GFG    F  +   + 
Sbjct  263  -GRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALL----LLGFGFGLVFPALNALVS  317

Query  424  DAFS-EHAASVTASMTVVRSLIGAFLP  449
            D    E   + +       SL GA  P
Sbjct  318  DLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.141    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 617738928


Query= TCONS_00020922

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            130     2e-34


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 130 bits (329),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 81/387 (21%), Positives = 143/387 (37%), Gaps = 44/387 (11%)

Query  64   VAFLTFLTPLASSMVAPAGGLVIETFNITSESLASFVVSIYLVGFAVGPLVLGPLSEIYG  123
            +    FL  L  S++ PA  L++      S +    +++++ +G+A+   + G LS+ +G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  124  RLRIYQACNAVFIVWNVACAVAPNVGSLLAFRLFAGIAGSCPLTLGAGSIADLFVPEERG  183
            R R+      +F +  +    A ++  LL  R+  G+            IAD F PEERG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  184  AAMSIYSMGPLMGPVVGPIAGGYLAEAAGWRWIFWVISMAGGAVFAFSLVFQTETYEPVL  243
             A+ + S G  +G  +GP+ GG LA   GWR  F ++++         L+ +        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES---  177

Query  244  LQRRVDQLRKEAGDMTLRSKLAPNISARDNFIRSIVRPTKMLFLSPIVAIFSVYLGIVYG  303
                                        +    S++   K L   P++ +    L    G
Sbjct  178  ----------------------KRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLF--G  213

Query  304  YLYLLFTTITPVYQTTYQFSQGAAGLTYLGIGVGSLIGLLIFGTISDKILIYLTKQNDGV  363
            + +    T  P+YQ     S   AGL     G+   IG L+ G +SD++           
Sbjct  214  FAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRL-----------  262

Query  364  REPEFRMPPLIPGSLFVPIGLFWYGWSAEKQLHWMMPIVGTGFVGFGMLASFLPIQTYLV  423
                 R+   +   +   +GL     +       +  +     +GFG    F  +   + 
Sbjct  263  -GRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALL----LLGFGFGLVFPALNALVS  317

Query  424  DAFS-EHAASVTASMTVVRSLIGAFLP  449
            D    E   + +       SL GA  P
Sbjct  318  DLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.141    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 617738928


Query= TCONS_00026322

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            129     1e-34
CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         62.7    3e-11


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 129 bits (325),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 53/241 (22%), Positives = 100/241 (41%), Gaps = 20/241 (8%)

Query  64   VAFLTFLTPLASSMVAPAGGLVI-ETFNITSESLASFVVSIYLVGFAVGPLVLGPLSEIY  122
            +    FL  L  S++ PA  L++ E   I S +    +++++ +G+A+   + G LS+ +
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGI-SPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  123  GRLRIYQACNAVFIVWNVACAVAPNVGSLLAFRLFAGIAGSCPLTLGAGSIADLFVPEER  182
            GR R+      +F +  +    A ++  LL  R+  G+            IAD F PEER
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  183  GAAMSIYSMGPLMGPVVGPIAGGYLAEAAGWRWIFWVISMAGGAVFAFSLVFQTETYEPV  242
            G A+ + S G  +G  +GP+ GG LA   GWR  F ++++         L+ +       
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKR  179

Query  243  LLQRRVDQLRKEAGDMTLRSKLAPNISARDNFIRSIVRPTKMLFLSPIVAIFSVYLGMYT  302
                   +L                        ++++R   +  L  ++     + G+ T
Sbjct  180  PKPAEEARLSLIVA------------------WKALLRDPVLWLLLALLLFGFAFFGLLT  221

Query  303  H  303
            +
Sbjct  222  Y  222


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 62.7 bits (153),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 17/174 (10%)

Query  91   ITSESLASFVVSIYLVGFAVGPLVLGPLSEIYGRLRIYQACNAVFIVWNVACAVAPNVGS  150
                 L+  +VSI+ VG  +G L  G L + +GR +     N +F++  V    A    S
Sbjct  42   AALSVLSGLIVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWS  101

Query  151  ---LLAFRLFAGIA-----GSCPLTLGAGSIADLFVPEERGAAMSIYSMGPLMGPVVGPI  202
               L+  R+  GI         P+ +   +   L     RGA  S+Y +    G ++  I
Sbjct  102  VYQLIVGRVLVGIGVGGASVLAPMYISEIAPKKL-----RGALGSLYQLAITFGILLAYI  156

Query  203  AG---GYLAEAAGWRWIFWVISMAGGAVFAFSLVFQTETYEPVLLQRRVDQLRK  253
             G      + + GWR    +  +    +    L+F  E+   ++ + R+++ R+
Sbjct  157  FGLGLNKTSNSDGWRIPLGLQLVPALLLIIG-LLFLPESPRWLVEKGRLEEARE  209



Lambda      K        H        a         alpha
   0.325    0.139    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00020923

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            85.9    4e-19


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 85.9 bits (213),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 106/309 (34%), Gaps = 49/309 (16%)

Query  60   NVTSVAFLTFLTPLASSMVAPAGGLVIETFNITNLFVPEERGAAMSIYSMGPLMGPVVGP  119
            ++  +  L  L  L +  + PA   +I      + F PEERG A+ + S G  +G  +GP
Sbjct  84   SLWLLLVLRVLQGLGAGALFPAALALI-----ADWFPPEERGRALGLVSAGFGLGAALGP  138

Query  120  IAGGYLAEAAGWRWIFWVISMAGGAVFAFSLVFQTETYEPVLLQRRVDQLRKEAGDMTLR  179
            + GG LA   GWR  F ++++         L+ +                          
Sbjct  139  LLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES---------------------  177

Query  180  SKLAPNISARDNFIRSIVRPTKMLFLSPIVAIFSVYLGIVYGYLYLLFTTITPVYQTTYQ  239
                      +    S++   K L   P++ +    L    G+ +    T  P+YQ    
Sbjct  178  ----KRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLF--GFAFFGLLTYLPLYQEVLG  231

Query  240  FSQGAAGLTYLGIGVGSLIGLLIFGTISDKILIYLTKQNDGVREPEFRMPPLIPGSLFVP  299
             S   AGL     G+   IG L+ G +SD++                R+   +   +   
Sbjct  232  LSALLAGLLLGLGGLLGAIGRLLLGRLSDRL------------GRRRRLLLALLLLILAA  279

Query  300  IGLFWYGWSAEKQLHWMMPIVGTGFVGFGMLASFLPIQTYLVDAFS-EHAASVTASMTVV  358
            +GL     +       +  +     +GFG    F  +   + D    E   + +      
Sbjct  280  LGLLLLSLTLSSLWLLLALL----LLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTA  335

Query  359  RSLIGAFLP  367
             SL GA  P
Sbjct  336  GSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00026323

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            87.5    5e-21


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 87.5 bits (217),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 67/140 (48%), Gaps = 0/140 (0%)

Query  77   VAFLTFLTPLASSMVAPAGGLVIETFNITSESLASFVVSIYLVGFAVGPLVLGPLSEIYG  136
            +    FL  L  S++ PA  L++      S +    +++++ +G+A+   + G LS+ +G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  137  RLRIYQACNAVFIVWNVACAVAPNVGSLLAFRLFAGIAGSCPLTLGAGSIADLFVPEERG  196
            R R+      +F +  +    A ++  LL  R+  G+            IAD F PEERG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  197  AAMSIYSMGPLMGPVVGPIA  216
             A+ + S G  +G  +GP+ 
Sbjct  121  RALGLVSAGFGLGAALGPLL  140



Lambda      K        H        a         alpha
   0.323    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00020924

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            129     1e-34
CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         63.1    3e-11


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 129 bits (325),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 53/241 (22%), Positives = 100/241 (41%), Gaps = 20/241 (8%)

Query  77   VAFLTFLTPLASSMVAPAGGLVI-ETFNITSESLASFVVSIYLVGFAVGPLVLGPLSEIY  135
            +    FL  L  S++ PA  L++ E   I S +    +++++ +G+A+   + G LS+ +
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGI-SPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  136  GRLRIYQACNAVFIVWNVACAVAPNVGSLLAFRLFAGIAGSCPLTLGAGSIADLFVPEER  195
            GR R+      +F +  +    A ++  LL  R+  G+            IAD F PEER
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  196  GAAMSIYSMGPLMGPVVGPIAGGYLAEAAGWRWIFWVISMAGGAVFAFSLVFQTETYEPV  255
            G A+ + S G  +G  +GP+ GG LA   GWR  F ++++         L+ +       
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKR  179

Query  256  LLQRRVDQLRKEAGDMTLRSKLAPNISARDNFIRSIVRPTKMLFLSPIVAIFSVYLGMYT  315
                   +L                        ++++R   +  L  ++     + G+ T
Sbjct  180  PKPAEEARLSLIVA------------------WKALLRDPVLWLLLALLLFGFAFFGLLT  221

Query  316  H  316
            +
Sbjct  222  Y  222


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 63.1 bits (154),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 17/174 (10%)

Query  104  ITSESLASFVVSIYLVGFAVGPLVLGPLSEIYGRLRIYQACNAVFIVWNVACAVAPNVGS  163
                 L+  +VSI+ VG  +G L  G L + +GR +     N +F++  V    A    S
Sbjct  42   AALSVLSGLIVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWS  101

Query  164  ---LLAFRLFAGIA-----GSCPLTLGAGSIADLFVPEERGAAMSIYSMGPLMGPVVGPI  215
               L+  R+  GI         P+ +   +   L     RGA  S+Y +    G ++  I
Sbjct  102  VYQLIVGRVLVGIGVGGASVLAPMYISEIAPKKL-----RGALGSLYQLAITFGILLAYI  156

Query  216  AG---GYLAEAAGWRWIFWVISMAGGAVFAFSLVFQTETYEPVLLQRRVDQLRK  266
             G      + + GWR    +  +    +    L+F  E+   ++ + R+++ R+
Sbjct  157  FGLGLNKTSNSDGWRIPLGLQLVPALLLIIG-LLFLPESPRWLVEKGRLEEARE  209



Lambda      K        H        a         alpha
   0.324    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00020925

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            131     1e-34


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 131 bits (331),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 81/387 (21%), Positives = 143/387 (37%), Gaps = 44/387 (11%)

Query  77   VAFLTFLTPLASSMVAPAGGLVIETFNITSESLASFVVSIYLVGFAVGPLVLGPLSEIYG  136
            +    FL  L  S++ PA  L++      S +    +++++ +G+A+   + G LS+ +G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  137  RLRIYQACNAVFIVWNVACAVAPNVGSLLAFRLFAGIAGSCPLTLGAGSIADLFVPEERG  196
            R R+      +F +  +    A ++  LL  R+  G+            IAD F PEERG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  197  AAMSIYSMGPLMGPVVGPIAGGYLAEAAGWRWIFWVISMAGGAVFAFSLVFQTETYEPVL  256
             A+ + S G  +G  +GP+ GG LA   GWR  F ++++         L+ +        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES---  177

Query  257  LQRRVDQLRKEAGDMTLRSKLAPNISARDNFIRSIVRPTKMLFLSPIVAIFSVYLGIVYG  316
                                        +    S++   K L   P++ +    L    G
Sbjct  178  ----------------------KRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLF--G  213

Query  317  YLYLLFTTITPVYQTTYQFSQGAAGLTYLGIGVGSLIGLLIFGTISDKILIYLTKQNDGV  376
            + +    T  P+YQ     S   AGL     G+   IG L+ G +SD++           
Sbjct  214  FAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRL-----------  262

Query  377  REPEFRMPPLIPGSLFVPIGLFWYGWSAEKQLHWMMPIVGTGFVGFGMLASFLPIQTYLV  436
                 R+   +   +   +GL     +       +  +     +GFG    F  +   + 
Sbjct  263  -GRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALL----LLGFGFGLVFPALNALVS  317

Query  437  DAFS-EHAASVTASMTVVRSLIGAFLP  462
            D    E   + +       SL GA  P
Sbjct  318  DLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 637421786


Query= TCONS_00020926

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00020927

Length=215


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00020928

Length=215


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00020929

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395837 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dep...  206     3e-63


>CDD:395837 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent 
enzyme.  This family includes enzymes involved in cysteine and 
methionine metabolism. The following are members: Cystathionine 
gamma-lyase, Cystathionine gamma-synthase, Cystathionine 
beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, 
O-succinylhomoserine sulfhydrylase All of these members participate 
is slightly different reactions. All these enzymes 
use PLP (pyridoxal-5'-phosphate) as a cofactor.
Length=376

 Score = 206 bits (526),  Expect = 3e-63, Method: Composition-based stats.
 Identities = 120/413 (29%), Positives = 194/413 (47%), Gaps = 70/413 (17%)

Query  30   ATRAIHADDFVSP-HRAIAPGIHTAVNFRYARDPDELVPEENKDPNAPFDSHIYSRYTAP  88
             T A+HA     P   A++  I+    + +             D       + YSR   P
Sbjct  1    DTLAVHAGQRPDPQTGAVSVPIYLTSTYVF-------------DFAGEEGGYDYSRSGNP  47

Query  89   NANRLEVLLRSLMGGE-VITYSTGLSAFHAML--ILLNPKRIFIGEG-YHGCHSVVDIIH  144
              + LE  + +L GG   + +S+G++A  A +  +L     I   +  Y G + + + + 
Sbjct  48   TRDVLEERIAALEGGAAALAFSSGMAAITAAILALLKAGDHIVATDDLYGGTYRLFNKVL  107

Query  145  RLTGIQKLDLTQIDQAGPGDI----------IHVETPLNPTGEARNLAYYRAKASEKGAY  194
               GI+   +T +D + P D+          +++ETP NP  +  ++      A + G  
Sbjct  108  PRFGIE---VTFVDTSDPEDLEAAIKPNTKAVYLETPTNPLLKVVDIEAIAKLAKKHGIL  164

Query  195  LTVDSTFAPPPLQNPLEFGADIVMHSGTKYVGGHSDMLCGILVIHPRRVKEGWLKT-LRT  253
            + VD+TFA P LQ PL+ GADIV+HS TKY+GGHSD++ G++V     V    L   L  
Sbjct  165  VVVDNTFASPYLQRPLDLGADIVVHSATKYIGGHSDVVGGVIV-----VNGEELGKELYF  219

Query  254  DRQYIGSVMGSFEGWLGIRSARTMQLRVTRQAQTAERLAKWLQDQLKDETSPIAKVL---  310
             +   G+V+  F+ WL +R  +T+ LR+ +  + A+++A++L+   K     + KV    
Sbjct  220  LQNATGAVLSPFDAWLLLRGLKTLGLRMEQHQENAQKVAEFLESHPK-----VEKVYYPG  274

Query  311  --SHIQHASLQEDDLKNGWLQKQMPGGFGPVFAVWTKN-PEHARRLPSRMFIFQHATSLG  367
              SH  H            L K+   GFG + +   K   E A++    + +F  A SLG
Sbjct  275  LPSHPGHE-----------LAKRQMKGFGGMLSFELKGGLEAAKKFLDNLKLFSLAVSLG  323

Query  368  GVESLMEWRA-MSDARCDHR----------LLRISCGIEEFDDMKADILQGLE  409
            GVESL+   A M+ A               L+R+S GIE+ DD+ AD+ Q LE
Sbjct  324  GVESLISHPATMTHASIPPEEREAAGITDDLIRLSVGIEDVDDLIADLKQALE  376



Lambda      K        H        a         alpha
   0.321    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 507942834


Query= TCONS_00020930

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase. This fam...  113     6e-29


>CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase.  This family includes 
various FAD dependent oxidoreductases: Glycerol-3-phosphate 
dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit 
EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate 
oxidase EC:1.4.3.1.
Length=339

 Score = 113 bits (284),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 84/371 (23%), Positives = 123/371 (33%), Gaps = 51/371 (14%)

Query  5    DVAVVGLGVLGSGAAYYAAKKGAKVIAFE-------------QFELGHVRGASHDTSRIV  51
            DV V+G G++G               A+E               + G   GAS   + ++
Sbjct  1    DVVVIGGGIVGLS------------TAYELARRGLSVTLLERGDDPGS--GASGRNAGLI  46

Query  52   RTSNFAPE---YVALAKSAYKDWAELEKITGYQMLTTTGGVVFFAPDSPTSA-SDFTRSL  107
                   E      LA  A   W ELE+  G        GV+  A D    A      +L
Sbjct  47   HPGLRYLEPSELARLALEALDLWEELEEELGIDCGFRRCGVLVLARDEEEEALEKLLAAL  106

Query  108  DTHDVPYELLDAQEVKRRWPQFNIPQSVSTVYTADSAIVHAAKTVSTLQSLARSHGAILK  167
                VP ELLDA+E++   P   +P     ++  D   V  A+ +  L   A + G  + 
Sbjct  107  RRLGVPAELLDAEELRELEP--LLPGLRGGLFYPDGGHVDPARLLRALARAAEALGVRII  164

Query  168  DNTPVERLIPQASGGVIIETPKGQFHAGKVILATDAWINKLLAPLSVHIPVSVMQEQVTY  227
            + T V  +  +  GGV      G+  A  V+ A  AW + L  P        V  + +  
Sbjct  165  EGTEVTGIEEE--GGVWGVVTTGEADA--VVNAAGAWADLLALPGLRLPVRPVRGQVLVL  220

Query  228  FKPTDAGTFEPDRFPVWIWHGANCFYGFPCYGEPTMKAGRDYSNNLMTPEQRTFVHSPQL  287
                +A    P    V         Y  P      +  G D  +    P        P+ 
Sbjct  221  EPLPEALLILPVPITV---DPGRGVYLRPRADGRLLLGGTDEEDGFDDPT-----PDPEE  272

Query  288  LEQLTSFMNGFIPDQDRQPLRTITCQYTITPDRRFIISPLKNYPDIIV--GLSAAHAFKF  345
            +E+L        P       R         PD   II      P + +  G    H    
Sbjct  273  IEELLEAARRLFP-ALADIERAWAG-LRPLPDGLPIIGRPG-SPGLYLATGHG-GHGLTL  328

Query  346  APAFGRVLAEL  356
            AP  G++LAEL
Sbjct  329  APGIGKLLAEL  339



Lambda      K        H        a         alpha
   0.320    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00026324

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00026325

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00026326

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.146    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00020937

Length=329


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 385413556


Query= TCONS_00020933

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.147    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00020934

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.146    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00026327

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.146    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00020935

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.146    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00020936

Length=329


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 385413556


Query= TCONS_00020939

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00020938

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00026328

Length=226


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.146    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00020940

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease. Aspartyl...  159     7e-46


>CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease.  Aspartyl (acid) 
proteases include pepsins, cathepsins, and renins. Two-domain 
structure, probably arising from ancestral duplication. 
This family does not include the retroviral nor retrotransposon 
proteases (pfam00077), which are much smaller and appear 
to be homologous to a single domain of the eukaryotic asp proteases.
Length=313

 Score = 159 bits (404),  Expect = 7e-46, Method: Composition-based stats.
 Identities = 103/354 (29%), Positives = 165/354 (47%), Gaps = 52/354 (15%)

Query  94   GFATSINIG--NQTFEVVIDTGSSDLWVVRDGFICIDPVSRKEVAQSECRFGPAYAPN--  149
             +  +I+IG   Q F V+ DTGSSDLWV           S      S C+    + P+  
Sbjct  1    EYFGTISIGTPPQKFTVIFDTGSSDLWV----------PSSYCTKSSACKSHGTFDPSSS  50

Query  150  TTFHEVVGEFVDIKYADGEILSGVIGTENVTLAGITV-NQTIGVMD--YAGWYGDGVTSG  206
            +T+      F  I Y DG   SG +G + VT+ G+T+ NQ  G+       ++      G
Sbjct  51   STYKLNGTTF-SISYGDGS-ASGFLGQDTVTVGGLTITNQEFGLATKEPGSFFEYAKFDG  108

Query  207  LMGLAYSSLASAYTTNNRQPRLYNPIFATMYEQGLID-PIFSMVMNRNASNGTAAGYLTL  265
            ++GL + S+++   T         P+F  +  QGLID P FS+ +N   + G   G +  
Sbjct  109  ILGLGFPSISAVGAT---------PVFDNLKSQGLIDSPAFSVYLNSPDAAG---GEIIF  156

Query  266  GGLPPVDINGNFSTTPILITNIKGYPKDYDFYAVNIDGVALGNRSLPEAAGGIQYIIDSG  325
            GG+ P    G+ +  P  +T+ +GY      + + +D V +G  +    + G Q I+D+G
Sbjct  157  GGVDPSKYTGSLTYVP--VTS-QGY------WQITLDSVTVGGSTSA-CSSGCQAILDTG  206

Query  326  TTLNYYPTPVADSVNAAFIPPAVYNDYDGAYVVDCNA--TASVHGVMIGGSTFYINPTDM  383
            T+L Y PT +   +  A       +   G YVVDC++  T      +IGG+   + P+  
Sbjct  207  TSLLYGPTSIVSKIAKAV---GASSSEYGEYVVDCDSISTLPDITFVIGGAKITVPPSAY  263

Query  384  ILPGGMDNSGNKTCISGINAGGDVGQGIFVLGGTFLRNVVAVFDVGAAEMRFAA  437
            +L    ++ G  TC+SG       G  +++LG  FLR+   VFD     + FA 
Sbjct  264  VLQ---NSQGGSTCLSGFQPPP--GGPLWILGDVFLRSAYVVFDRDNNRIGFAP  312



Lambda      K        H        a         alpha
   0.317    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0809    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00020942

Length=262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  76.9    1e-17


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 76.9 bits (190),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 37/134 (28%), Positives = 57/134 (43%), Gaps = 23/134 (17%)

Query  93   IVTGANTGLGFEAAKHLVGLEAAKVIVAVRNISAGEKAKKDIEESTGRIGVAEVWPLDLA  152
            +VTGA++G+G   AK L   E AKV++  R+    E   K++    G+   A     D+ 
Sbjct  4    LVTGASSGIGRAIAKRLAK-EGAKVVLVDRSEEKLEAVAKELGALGGK---ALFIQGDVT  59

Query  153  SYDSVKTFAQKATTELDRIDAVIENAAVAVS-----------ERVFAEGHSMSVTVNVLS  201
                VK   ++A   L R+D ++ NA +              ERV          VN+  
Sbjct  60   DRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVID--------VNLTG  111

Query  202  TFLLAVLILPKMRE  215
             F L   +LP M +
Sbjct  112  VFNLTRAVLPAMIK  125



Lambda      K        H        a         alpha
   0.316    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00020941

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  78.8    8e-18


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 78.8 bits (195),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 37/134 (28%), Positives = 57/134 (43%), Gaps = 23/134 (17%)

Query  93   IVTGANTGLGFEAAKHLVGLEAAKVIVAVRNISAGEKAKKDIEESTGRIGVAEVWPLDLA  152
            +VTGA++G+G   AK L   E AKV++  R+    E   K++    G+   A     D+ 
Sbjct  4    LVTGASSGIGRAIAKRLAK-EGAKVVLVDRSEEKLEAVAKELGALGGK---ALFIQGDVT  59

Query  153  SYDSVKTFAQKATTELDRIDAVIENAAVAVS-----------ERVFAEGHSMSVTVNVLS  201
                VK   ++A   L R+D ++ NA +              ERV          VN+  
Sbjct  60   DRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVID--------VNLTG  111

Query  202  TFLLAVLILPKMRE  215
             F L   +LP M +
Sbjct  112  VFNLTRAVLPAMIK  125



Lambda      K        H        a         alpha
   0.316    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00020943

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) fa...  56.0    9e-11


>CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.  
This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=116

 Score = 56.0 bits (135),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 29/62 (47%), Gaps = 4/62 (6%)

Query  165  VYMIAGMFVLPASRGMGNGRRLVEEAIRHTRGASPATEQTLLVLLVEANNEAARKLYERC  224
            V  I G+ V P  RG G G  L++  +   R          + L V A+N AA  LYE+ 
Sbjct  59   VGEIEGLAVAPEYRGKGIGTALLQALLEWARER----GCERIFLEVAADNLAAIALYEKL  114

Query  225  GF  226
            GF
Sbjct  115  GF  116



Lambda      K        H        a         alpha
   0.317    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00020945

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461766 pfam05875, Ceramidase, Ceramidase. This family consist...  98.4    7e-27


>CDD:461766 pfam05875, Ceramidase, Ceramidase.  This family consists of several 
ceramidases. Ceramidases are enzymes involved in regulating 
cellular levels of ceramides, sphingoid bases, and their 
phosphates, EC:3.5.1.23. This family belongs to the CREST 
superfamily, which are distantly related to the GPCRs.
Length=259

 Score = 98.4 bits (246),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 60/123 (49%), Gaps = 1/123 (1%)

Query  1    MAVGLCSALFHISLNYHTQMLDDLSMMFTTTPVLHRVMTASASPGVTLIVGIVLGSTLLA  60
            + VGL S LFH++L YH Q+LD+L M++ T   L+ + +   SP    ++ + L    + 
Sbjct  60   ILVGLGSWLFHMTLKYHGQLLDELPMIYATCIPLYSLFSEGKSPPYRRLLPLFLFLLAVI  119

Query  61   LVIYHLKTDELLLHSLFFVGSVTVIGVFTMRLINARTRAGSEARRQIWGMVRFGAGYIQF  120
            L + +L     + H + +     ++   ++ LI  +T    +A++Q+W +   G      
Sbjct  120  LTVLYLVLKNPVFHQVAYALLTLLVLFRSIYLIK-KTVRDPKAKKQLWRLAILGVALFLL  178

Query  121  GIL  123
            G  
Sbjct  179  GFF  181



Lambda      K        H        a         alpha
   0.330    0.141    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00020944

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461766 pfam05875, Ceramidase, Ceramidase. This family consist...  201     7e-65


>CDD:461766 pfam05875, Ceramidase, Ceramidase.  This family consists of several 
ceramidases. Ceramidases are enzymes involved in regulating 
cellular levels of ceramides, sphingoid bases, and their 
phosphates, EC:3.5.1.23. This family belongs to the CREST 
superfamily, which are distantly related to the GPCRs.
Length=259

 Score = 201 bits (513),  Expect = 7e-65, Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 123/206 (60%), Gaps = 3/206 (1%)

Query  42   SKYAAEFINTLTNVVYVIYAIYGLYHLWQKPNVGFLRTVPYLGLMAVGLCSALFHISLNY  101
            S Y AEF+NTL+N+V++I A+YG+Y  ++   +     + YLGL+ VGL S LFH++L Y
Sbjct  17   SPYIAEFVNTLSNLVFIILALYGIYLAYRNG-LEKRFLLIYLGLILVGLGSWLFHMTLKY  75

Query  102  HTQMLDDLSMMFTTTPVLHRVMTASASPGVTLIVGIVLGSTLLALVIYHLKTDELLLHSL  161
            H Q+LD+L M++ T   L+ + +   SP    ++ + L    + L + +L     + H +
Sbjct  76   HGQLLDELPMIYATCIPLYSLFSEGKSPPYRRLLPLFLFLLAVILTVLYLVLKNPVFHQV  135

Query  162  FFVGSVTVIGVFTMRLINARTRAGSEARRQIWGMVRFGAGIFNLGYWLWMVDGWMCS-YL  220
             +     ++   ++ LI  +T    +A++Q+W +   G  +F LG+++W +D   CS +L
Sbjct  136  AYALLTLLVLFRSIYLIK-KTVRDPKAKKQLWRLAILGVALFLLGFFIWNLDNHFCSFWL  194

Query  221  KSTRQTVGLPWAFLLELHGWWHICTG  246
            +  R  +GLPW FLLELHGWWHI TG
Sbjct  195  RIRRHALGLPWGFLLELHGWWHILTG  220



Lambda      K        H        a         alpha
   0.328    0.139    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00020948

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461766 pfam05875, Ceramidase, Ceramidase. This family consist...  187     1e-59


>CDD:461766 pfam05875, Ceramidase, Ceramidase.  This family consists of several 
ceramidases. Ceramidases are enzymes involved in regulating 
cellular levels of ceramides, sphingoid bases, and their 
phosphates, EC:3.5.1.23. This family belongs to the CREST 
superfamily, which are distantly related to the GPCRs.
Length=259

 Score = 187 bits (477),  Expect = 1e-59, Method: Composition-based stats.
 Identities = 70/200 (35%), Positives = 118/200 (59%), Gaps = 3/200 (2%)

Query  42   SKYAAEFINTLTNVVYVIYAIYGLYHLWQKPNVGFLRTVPYLGLMAVGLCSALFHISLNY  101
            S Y AEF+NTL+N+V++I A+YG+Y  ++   +     + YLGL+ VGL S LFH++L Y
Sbjct  17   SPYIAEFVNTLSNLVFIILALYGIYLAYRNG-LEKRFLLIYLGLILVGLGSWLFHMTLKY  75

Query  102  HTQMLDDLSMMFTTTPVLHRVMTASASPGVTLIVGIVLGSTLLALVIYHLKTDELLLHSL  161
            H Q+LD+L M++ T   L+ + +   SP    ++ + L    + L + +L     + H +
Sbjct  76   HGQLLDELPMIYATCIPLYSLFSEGKSPPYRRLLPLFLFLLAVILTVLYLVLKNPVFHQV  135

Query  162  FFVGSVTVIGVFTMRLINARTRAGSEARRQIWGMVRFGAGIFNLGYWLWMVDGWMCS-YL  220
             +     ++   ++ LI  +T    +A++Q+W +   G  +F LG+++W +D   CS +L
Sbjct  136  AYALLTLLVLFRSIYLIK-KTVRDPKAKKQLWRLAILGVALFLLGFFIWNLDNHFCSFWL  194

Query  221  KSTRQTVGLPWAFLLELHGW  240
            +  R  +GLPW FLLELHGW
Sbjct  195  RIRRHALGLPWGFLLELHGW  214



Lambda      K        H        a         alpha
   0.327    0.139    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00026330

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461766 pfam05875, Ceramidase, Ceramidase. This family consist...  224     8e-74


>CDD:461766 pfam05875, Ceramidase, Ceramidase.  This family consists of several 
ceramidases. Ceramidases are enzymes involved in regulating 
cellular levels of ceramides, sphingoid bases, and their 
phosphates, EC:3.5.1.23. This family belongs to the CREST 
superfamily, which are distantly related to the GPCRs.
Length=259

 Score = 224 bits (573),  Expect = 8e-74, Method: Composition-based stats.
 Identities = 82/222 (37%), Positives = 137/222 (62%), Gaps = 3/222 (1%)

Query  36   GPITANSNFCEEDYLVTRYAAEFINTLTNVVYVIYAIYGLYHLWQKPNVGFLRTVPYLGL  95
            GP+T+  ++CEE+Y+V+ Y AEF+NTL+N+V++I A+YG+Y  ++   +     + YLGL
Sbjct  1    GPVTSTIDWCEENYVVSPYIAEFVNTLSNLVFIILALYGIYLAYRNG-LEKRFLLIYLGL  59

Query  96   MAVGLCSALFHISLNYHTQMLDDLSMMFTTTPVLHRVMTASASPGVTLIVGIVLGSTLLA  155
            + VGL S LFH++L YH Q+LD+L M++ T   L+ + +   SP    ++ + L    + 
Sbjct  60   ILVGLGSWLFHMTLKYHGQLLDELPMIYATCIPLYSLFSEGKSPPYRRLLPLFLFLLAVI  119

Query  156  LVIYHLKTDELLLHSLFFVGSVTVIGVFTMRLINARTRAGSEARRQIWGMVRFGAGIFNL  215
            L + +L     + H + +     ++   ++ LI  +T    +A++Q+W +   G  +F L
Sbjct  120  LTVLYLVLKNPVFHQVAYALLTLLVLFRSIYLIK-KTVRDPKAKKQLWRLAILGVALFLL  178

Query  216  GYWLWMVDGWMCS-YLKSTRQTVGLPWAFLLELHGWWHICTG  256
            G+++W +D   CS +L+  R  +GLPW FLLELHGWWHI TG
Sbjct  179  GFFIWNLDNHFCSFWLRIRRHALGLPWGFLLELHGWWHILTG  220



Lambda      K        H        a         alpha
   0.328    0.140    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00020947

Length=172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461766 pfam05875, Ceramidase, Ceramidase. This family consist...  156     2e-48


>CDD:461766 pfam05875, Ceramidase, Ceramidase.  This family consists of several 
ceramidases. Ceramidases are enzymes involved in regulating 
cellular levels of ceramides, sphingoid bases, and their 
phosphates, EC:3.5.1.23. This family belongs to the CREST 
superfamily, which are distantly related to the GPCRs.
Length=259

 Score = 156 bits (396),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 56/162 (35%), Positives = 93/162 (57%), Gaps = 2/162 (1%)

Query  1    MAVGLCSALFHISLNYHTQMLDDLSMMFTTTPVLHRVMTASASPGVTLIVGIVLGSTLLA  60
            + VGL S LFH++L YH Q+LD+L M++ T   L+ + +   SP    ++ + L    + 
Sbjct  60   ILVGLGSWLFHMTLKYHGQLLDELPMIYATCIPLYSLFSEGKSPPYRRLLPLFLFLLAVI  119

Query  61   LVIYHLKTDELLLHSLFFVGSVTVIGVFTMRLINARTRAGSEARRQIWGMVRFGAGIFNL  120
            L + +L     + H + +     ++   ++ LI  +T    +A++Q+W +   G  +F L
Sbjct  120  LTVLYLVLKNPVFHQVAYALLTLLVLFRSIYLIK-KTVRDPKAKKQLWRLAILGVALFLL  178

Query  121  GYWLWMVDGWMCS-YLKSTRQTVGLPWAFLLELHGWWHICTG  161
            G+++W +D   CS +L+  R  +GLPW FLLELHGWWHI TG
Sbjct  179  GFFIWNLDNHFCSFWLRIRRHALGLPWGFLLELHGWWHILTG  220



Lambda      K        H        a         alpha
   0.330    0.141    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00020946

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461766 pfam05875, Ceramidase, Ceramidase. This family consist...  142     2e-43


>CDD:461766 pfam05875, Ceramidase, Ceramidase.  This family consists of several 
ceramidases. Ceramidases are enzymes involved in regulating 
cellular levels of ceramides, sphingoid bases, and their 
phosphates, EC:3.5.1.23. This family belongs to the CREST 
superfamily, which are distantly related to the GPCRs.
Length=259

 Score = 142 bits (360),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 51/156 (33%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query  1    MAVGLCSALFHISLNYHTQMLDDLSMMFTTTPVLHRVMTASASPGVTLIVGIVLGSTLLA  60
            + VGL S LFH++L YH Q+LD+L M++ T   L+ + +   SP    ++ + L    + 
Sbjct  60   ILVGLGSWLFHMTLKYHGQLLDELPMIYATCIPLYSLFSEGKSPPYRRLLPLFLFLLAVI  119

Query  61   LVIYHLKTDELLLHSLFFVGSVTVIGVFTMRLINARTRAGSEARRQIWGMVRFGAGIFNL  120
            L + +L     + H + +     ++   ++ LI  +T    +A++Q+W +   G  +F L
Sbjct  120  LTVLYLVLKNPVFHQVAYALLTLLVLFRSIYLIK-KTVRDPKAKKQLWRLAILGVALFLL  178

Query  121  GYWLWMVDGWMCS-YLKSTRQTVGLPWAFLLELHGW  155
            G+++W +D   CS +L+  R  +GLPW FLLELHGW
Sbjct  179  GFFIWNLDNHFCSFWLRIRRHALGLPWGFLLELHGW  214



Lambda      K        H        a         alpha
   0.330    0.140    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00020949

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461766 pfam05875, Ceramidase, Ceramidase. This family consist...  145     1e-43


>CDD:461766 pfam05875, Ceramidase, Ceramidase.  This family consists of several 
ceramidases. Ceramidases are enzymes involved in regulating 
cellular levels of ceramides, sphingoid bases, and their 
phosphates, EC:3.5.1.23. This family belongs to the CREST 
superfamily, which are distantly related to the GPCRs.
Length=259

 Score = 145 bits (369),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 91/164 (55%), Gaps = 2/164 (1%)

Query  42   SKYAAEFINTLTNVVYVIYAIYGLYHLWQKPNVGFLRTVPYLGLMAVGLCSALFHISLNY  101
            S Y AEF+NTL+N+V++I A+YG+Y  ++   +     + YLGL+ VGL S LFH++L Y
Sbjct  17   SPYIAEFVNTLSNLVFIILALYGIYLAYRNG-LEKRFLLIYLGLILVGLGSWLFHMTLKY  75

Query  102  HTQMLDDLSMMFTTTPVLHRVMTASASPGVTLIVGIVLGSTLLALVIYHLKTDELLLHSL  161
            H Q+LD+L M++ T   L+ + +   SP    ++ + L    + L + +L     + H +
Sbjct  76   HGQLLDELPMIYATCIPLYSLFSEGKSPPYRRLLPLFLFLLAVILTVLYLVLKNPVFHQV  135

Query  162  FFVGSVTVIGVFTMRLINARTRAGSEARRQIWGMVRFGAGNILI  205
             +     ++   ++ LI  +T    +A++Q+W +   G    L+
Sbjct  136  AYALLTLLVLFRSIYLIK-KTVRDPKAKKQLWRLAILGVALFLL  178



Lambda      K        H        a         alpha
   0.327    0.139    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00026331

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) fa...  56.0    9e-11


>CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.  
This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=116

 Score = 56.0 bits (135),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 29/62 (47%), Gaps = 4/62 (6%)

Query  165  VYMIAGMFVLPASRGMGNGRRLVEEAIRHTRGASPATEQTLLVLLVEANNEAARKLYERC  224
            V  I G+ V P  RG G G  L++  +   R          + L V A+N AA  LYE+ 
Sbjct  59   VGEIEGLAVAPEYRGKGIGTALLQALLEWARER----GCERIFLEVAADNLAAIALYEKL  114

Query  225  GF  226
            GF
Sbjct  115  GF  116



Lambda      K        H        a         alpha
   0.317    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00020950

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461766 pfam05875, Ceramidase, Ceramidase. This family consist...  187     1e-59


>CDD:461766 pfam05875, Ceramidase, Ceramidase.  This family consists of several 
ceramidases. Ceramidases are enzymes involved in regulating 
cellular levels of ceramides, sphingoid bases, and their 
phosphates, EC:3.5.1.23. This family belongs to the CREST 
superfamily, which are distantly related to the GPCRs.
Length=259

 Score = 187 bits (478),  Expect = 1e-59, Method: Composition-based stats.
 Identities = 70/200 (35%), Positives = 118/200 (59%), Gaps = 3/200 (2%)

Query  42   SKYAAEFINTLTNVVYVIYAIYGLYHLWQKPNVGFLRTVPYLGLMAVGLCSALFHISLNY  101
            S Y AEF+NTL+N+V++I A+YG+Y  ++   +     + YLGL+ VGL S LFH++L Y
Sbjct  17   SPYIAEFVNTLSNLVFIILALYGIYLAYRNG-LEKRFLLIYLGLILVGLGSWLFHMTLKY  75

Query  102  HTQMLDDLSMMFTTTPVLHRVMTASASPGVTLIVGIVLGSTLLALVIYHLKTDELLLHSL  161
            H Q+LD+L M++ T   L+ + +   SP    ++ + L    + L + +L     + H +
Sbjct  76   HGQLLDELPMIYATCIPLYSLFSEGKSPPYRRLLPLFLFLLAVILTVLYLVLKNPVFHQV  135

Query  162  FFVGSVTVIGVFTMRLINARTRAGSEARRQIWGMVRFGAGIFNLGYWLWMVDGWMCS-YL  220
             +     ++   ++ LI  +T    +A++Q+W +   G  +F LG+++W +D   CS +L
Sbjct  136  AYALLTLLVLFRSIYLIK-KTVRDPKAKKQLWRLAILGVALFLLGFFIWNLDNHFCSFWL  194

Query  221  KSTRQTVGLPWAFLLELHGW  240
            +  R  +GLPW FLLELHGW
Sbjct  195  RIRRHALGLPWGFLLELHGW  214



Lambda      K        H        a         alpha
   0.327    0.139    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00026332

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) fa...  56.0    9e-11


>CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.  
This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=116

 Score = 56.0 bits (135),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 29/62 (47%), Gaps = 4/62 (6%)

Query  165  VYMIAGMFVLPASRGMGNGRRLVEEAIRHTRGASPATEQTLLVLLVEANNEAARKLYERC  224
            V  I G+ V P  RG G G  L++  +   R          + L V A+N AA  LYE+ 
Sbjct  59   VGEIEGLAVAPEYRGKGIGTALLQALLEWARER----GCERIFLEVAADNLAAIALYEKL  114

Query  225  GF  226
            GF
Sbjct  115  GF  116



Lambda      K        H        a         alpha
   0.317    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00026333

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461766 pfam05875, Ceramidase, Ceramidase. This family consist...  156     3e-48


>CDD:461766 pfam05875, Ceramidase, Ceramidase.  This family consists of several 
ceramidases. Ceramidases are enzymes involved in regulating 
cellular levels of ceramides, sphingoid bases, and their 
phosphates, EC:3.5.1.23. This family belongs to the CREST 
superfamily, which are distantly related to the GPCRs.
Length=259

 Score = 156 bits (398),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 106/203 (52%), Gaps = 12/203 (6%)

Query  1    MAVGLCSALFHISLNYHTQMLDDLSMMFTTTPVLHRVMTASASPGVTLIVGIVLGSTLLA  60
            + VGL S LFH++L YH Q+LD+L M++ T   L+ + +   SP    ++ + L    + 
Sbjct  60   ILVGLGSWLFHMTLKYHGQLLDELPMIYATCIPLYSLFSEGKSPPYRRLLPLFLFLLAVI  119

Query  61   LVIYHLKTDELLLHSLFFVGSVTVIGVFTMRLINARTRAGSEARRQIWGMVRFGAGIFNL  120
            L + +L     + H + +     ++   ++ LI  +T    +A++Q+W +   G  +F L
Sbjct  120  LTVLYLVLKNPVFHQVAYALLTLLVLFRSIYLIK-KTVRDPKAKKQLWRLAILGVALFLL  178

Query  121  GYWLWMVDGWMCS-YLKSTRQTVGLPWAFLLELHGC-HTESAGGTYVREGIGAYIFIAII  178
            G+++W +D   CS +L+  R  +GLPW FLLELHG  H        +  GIGAY +I ++
Sbjct  179  GFFIWNLDNHFCSFWLRIRRHALGLPWGFLLELHGWWH--------ILTGIGAYYYIVLL  230

Query  179  DHLVSGDNHKDI-PRSLAWPAPW  200
             +L +     +     L WP  +
Sbjct  231  AYLRACLEGPEPDEYLLYWPRDF  253



Lambda      K        H        a         alpha
   0.327    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00020951

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461766 pfam05875, Ceramidase, Ceramidase. This family consist...  202     4e-65


>CDD:461766 pfam05875, Ceramidase, Ceramidase.  This family consists of several 
ceramidases. Ceramidases are enzymes involved in regulating 
cellular levels of ceramides, sphingoid bases, and their 
phosphates, EC:3.5.1.23. This family belongs to the CREST 
superfamily, which are distantly related to the GPCRs.
Length=259

 Score = 202 bits (516),  Expect = 4e-65, Method: Composition-based stats.
 Identities = 80/247 (32%), Positives = 136/247 (55%), Gaps = 13/247 (5%)

Query  18   SKYAAEFINTLTNVVYVIYAIYGLYHLWQKPNVGFLRTVPYLGLMAVGLCSALFHISLNY  77
            S Y AEF+NTL+N+V++I A+YG+Y  ++   +     + YLGL+ VGL S LFH++L Y
Sbjct  17   SPYIAEFVNTLSNLVFIILALYGIYLAYRNG-LEKRFLLIYLGLILVGLGSWLFHMTLKY  75

Query  78   HTQMLDDLSMMFTTTPVLHRVMTASASPGVTLIVGIVLGSTLLALVIYHLKTDELLLHSL  137
            H Q+LD+L M++ T   L+ + +   SP    ++ + L    + L + +L     + H +
Sbjct  76   HGQLLDELPMIYATCIPLYSLFSEGKSPPYRRLLPLFLFLLAVILTVLYLVLKNPVFHQV  135

Query  138  FFVGSVTVIGVFTMRLINARTRAGSEARRQIWGMVRFGAGIFNLGYWLWMVDGWMCS-YL  196
             +     ++   ++ LI  +T    +A++Q+W +   G  +F LG+++W +D   CS +L
Sbjct  136  AYALLTLLVLFRSIYLIK-KTVRDPKAKKQLWRLAILGVALFLLGFFIWNLDNHFCSFWL  194

Query  197  KSTRQTVGLPWAFLLELHGC-HTESAGGTYVREGIGAYIFIAIIDHLVSGDNHKDI-PRS  254
            +  R  +GLPW FLLELHG  H        +  GIGAY +I ++ +L +     +     
Sbjct  195  RIRRHALGLPWGFLLELHGWWH--------ILTGIGAYYYIVLLAYLRACLEGPEPDEYL  246

Query  255  LAWPAPW  261
            L WP  +
Sbjct  247  LYWPRDF  253



Lambda      K        H        a         alpha
   0.326    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00020952

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461766 pfam05875, Ceramidase, Ceramidase. This family consist...  142     2e-43


>CDD:461766 pfam05875, Ceramidase, Ceramidase.  This family consists of several 
ceramidases. Ceramidases are enzymes involved in regulating 
cellular levels of ceramides, sphingoid bases, and their 
phosphates, EC:3.5.1.23. This family belongs to the CREST 
superfamily, which are distantly related to the GPCRs.
Length=259

 Score = 142 bits (360),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 51/156 (33%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query  1    MAVGLCSALFHISLNYHTQMLDDLSMMFTTTPVLHRVMTASASPGVTLIVGIVLGSTLLA  60
            + VGL S LFH++L YH Q+LD+L M++ T   L+ + +   SP    ++ + L    + 
Sbjct  60   ILVGLGSWLFHMTLKYHGQLLDELPMIYATCIPLYSLFSEGKSPPYRRLLPLFLFLLAVI  119

Query  61   LVIYHLKTDELLLHSLFFVGSVTVIGVFTMRLINARTRAGSEARRQIWGMVRFGAGIFNL  120
            L + +L     + H + +     ++   ++ LI  +T    +A++Q+W +   G  +F L
Sbjct  120  LTVLYLVLKNPVFHQVAYALLTLLVLFRSIYLIK-KTVRDPKAKKQLWRLAILGVALFLL  178

Query  121  GYWLWMVDGWMCS-YLKSTRQTVGLPWAFLLELHGW  155
            G+++W +D   CS +L+  R  +GLPW FLLELHGW
Sbjct  179  GFFIWNLDNHFCSFWLRIRRHALGLPWGFLLELHGW  214



Lambda      K        H        a         alpha
   0.330    0.140    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00020953

Length=172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461766 pfam05875, Ceramidase, Ceramidase. This family consist...  156     2e-48


>CDD:461766 pfam05875, Ceramidase, Ceramidase.  This family consists of several 
ceramidases. Ceramidases are enzymes involved in regulating 
cellular levels of ceramides, sphingoid bases, and their 
phosphates, EC:3.5.1.23. This family belongs to the CREST 
superfamily, which are distantly related to the GPCRs.
Length=259

 Score = 156 bits (396),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 56/162 (35%), Positives = 93/162 (57%), Gaps = 2/162 (1%)

Query  1    MAVGLCSALFHISLNYHTQMLDDLSMMFTTTPVLHRVMTASASPGVTLIVGIVLGSTLLA  60
            + VGL S LFH++L YH Q+LD+L M++ T   L+ + +   SP    ++ + L    + 
Sbjct  60   ILVGLGSWLFHMTLKYHGQLLDELPMIYATCIPLYSLFSEGKSPPYRRLLPLFLFLLAVI  119

Query  61   LVIYHLKTDELLLHSLFFVGSVTVIGVFTMRLINARTRAGSEARRQIWGMVRFGAGIFNL  120
            L + +L     + H + +     ++   ++ LI  +T    +A++Q+W +   G  +F L
Sbjct  120  LTVLYLVLKNPVFHQVAYALLTLLVLFRSIYLIK-KTVRDPKAKKQLWRLAILGVALFLL  178

Query  121  GYWLWMVDGWMCS-YLKSTRQTVGLPWAFLLELHGWWHICTG  161
            G+++W +D   CS +L+  R  +GLPW FLLELHGWWHI TG
Sbjct  179  GFFIWNLDNHFCSFWLRIRRHALGLPWGFLLELHGWWHILTG  220



Lambda      K        H        a         alpha
   0.330    0.141    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00020954

Length=308


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00020955

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  108     1e-27
CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide o...  55.7    1e-10


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 108 bits (273),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 81/318 (25%), Positives = 126/318 (40%), Gaps = 34/318 (11%)

Query  8    VVIIGASFAGAPIAHSLLKDVKTVRVILINPSPTF-YF-CIAGPRIVA----KPTAFRPE  61
            VV+IG   AG   A +L +     +V LI    T  Y  C+    ++        A    
Sbjct  3    VVVIGGGPAGLAAALTLAQ--LGGKVTLIEDEGTCPYGGCVLSKALLGAAEAPEIASLWA  60

Query  62   QYLIPIESAFKKYPSGSFEFIQGRATAINPEDKSVIV-----DGQTTIQFDYLVIAAGST  116
                  E   KK  +G    +     +I+P  K V++         TI +D LVIA G+ 
Sbjct  61   DLYKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEELVDGDGETITYDRLVIATGAR  120

Query  117  TPSTTRSDIPIPFKQSNADNMETLIKNAQQAISAASQ--IVIAGAGPIGVELAGEVAEAA  174
                     PIP  + N   +   + +A+          +V+ G G IGVELA  +A+  
Sbjct  121  PR-----LPPIPGVELNVGFLVRTLDSAEALRLKLLPKRVVVVGGGYIGVELAAALAKLG  175

Query  175  QKQGKSVKITLVSASDRVLPMLKTSGSKAAETLLTQKNVTIISSCKVTDAVLSTNGTWNL  234
                   ++TL+ A DR+L       S A E  L +  V +     V + +        +
Sbjct  176  ------KEVTLIEALDRLLRAFDEEISAALEKALEKNGVEVRLGTSVKEII-GDGDGVEV  228

Query  235  SLSNGKQLSADLYIPTTGTLPNSSFVPQQWL--DTHGWVKVNQELRVQGGQNAPLPVYAA  292
             L +G ++ ADL +   G  PN+  +    L  D  G + V++ LR     + P  +YAA
Sbjct  229  ILKDGTEIDADLVVVAIGRRPNTELLEAAGLELDERGGIVVDEYLRT----SVPG-IYAA  283

Query  293  GDITNNSMRLSFKATEQA  310
            GD       L+  A  Q 
Sbjct  284  GDCRVGGPELAQNAVAQG  301


>CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=80

 Score = 55.7 bits (135),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 22/77 (29%), Positives = 36/77 (47%), Gaps = 6/77 (8%)

Query  154  IVIAGAGPIGVELAGEVAEAAQKQGKSVKITLVSASDRVLPMLKTSGSKAAETLLTQKNV  213
            +V+ G G IG+ELAG    A  + G  V  T+V   DR+LP      +K  +  L +  +
Sbjct  2    VVVVGGGYIGLELAG----ALARLGSKV--TVVERRDRLLPGFDPEIAKILQEKLEKNGI  55

Query  214  TIISSCKVTDAVLSTNG  230
              + +  V     + +G
Sbjct  56   EFLLNTTVEAIEGNGDG  72



Lambda      K        H        a         alpha
   0.315    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00020956

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00020957

Length=57
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459862 pfam00596, Aldolase_II, Class II Aldolase and Adducin ...  55.6    3e-12


>CDD:459862 pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal 
domain.  This family includes class II aldolases and adducins 
which have not been ascribed any enzymatic function.
Length=178

 Score = 55.6 bits (135),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 0/44 (0%)

Query  2    IHSAIHAARPDVVCAAHSHSLHGRAFCTLGRPLDIITQDSCAFY  45
            +H AI+ ARPD     H+HS +  A       L  ITQ++  F 
Sbjct  71   LHLAIYRARPDAGAVVHTHSPYATALSLAKEGLPPITQEAADFL  114



Lambda      K        H        a         alpha
   0.328    0.132    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00020958

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00020959

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00020960

Length=68
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428146 pfam04828, GFA, Glutathione-dependent formaldehyde-act...  57.4    2e-13


>CDD:428146 pfam04828, GFA, Glutathione-dependent formaldehyde-activating 
enzyme.  The GFA enzyme catalyzes the first step in the detoxification 
of formaldehyde. This domain has a beta-tent fold.
Length=93

 Score = 57.4 bits (139),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 20/47 (43%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query  1   MFCGDCGTPFTSEPSGQDEVIIIKTGTLDDPYRDECGELAMEIWCVR  47
            FC +CGTP  SE +    VII++ GTLDDP   +  +   EIW   
Sbjct  50  YFCPNCGTPLYSESTAAPGVIIVRVGTLDDP---DQLKPVAEIWTKS  93



Lambda      K        H        a         alpha
   0.319    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00026334

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00026336

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00026337

Length=577


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 724797580


Query= TCONS_00020961

Length=592


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 747214000


Query= TCONS_00020962

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00020963

Length=619


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787563556


Query= TCONS_00020966

Length=616


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 783080272


Query= TCONS_00020965

Length=575


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 721808724


Query= TCONS_00026338

Length=527


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00020964

Length=611


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 775608132


Query= TCONS_00020967

Length=553


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00020968

Length=491


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0754    0.140     1.90     42.6     43.6 

Effective search space used: 605626400


Query= TCONS_00020969

Length=1424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           186     3e-54
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  132     8e-37
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  106     3e-27
CDD:465963 pfam19055, ABC2_membrane_7, ABC-2 type transporter         66.9    1e-11


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 186 bits (474),  Expect = 3e-54, Method: Composition-based stats.
 Identities = 67/205 (33%), Positives = 119/205 (58%), Gaps = 2/205 (1%)

Query  446  CIIRQYQIIWTDKATFAIKQISTVIQALVAGSLFYNAPDNSGGLFIKSGALFFSLLYNSL  505
             + R++   W D +    + I  ++ AL+ G+LF N   N  G   + G LFFS+L+N+ 
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLG-NQQGGLNRPGLLFFSILFNAF  59

Query  506  LAMSEVTDSF-SGRPVLIKHKYFAFFHPAAFCIAQIAADIPVLLFQISMFAVVVYFMVGL  564
             A+S ++  F   R VL +      + P+A+ +A+I +++P+ L Q  +F ++VYFMVGL
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  565  TTSAGAFFSYWIIIFVATMVMTALFRAIGALFSTFDGASKVSGFLISALIMYCGYLEPYH  624
              SAG FF + +++ +  +  ++L   I AL  +F+ AS++   ++  L++  G+  P  
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  625  AMHPWFIWIYWINPLAYAFDALLSI  649
            +M  W+ WIY++NPL YA +AL + 
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 148 bits (377),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 99/205 (48%), Gaps = 2/205 (1%)

Query  1112  VTQRMSTSLYRNCDYIMNKIALHIGSALFNGFSFWMIGDSVADMQLKLFTIFNFIFVAPG  1171
             + +R     +R+    + ++   I  AL  G  F  +G+    +       F+ +F A  
Sbjct  1     LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGLLFFSILFNAFS  60

Query  1172  VINQLQPLFIERRDIYDAREKKSKMYSWVAFVTALIVSEFPYLCVCAVLYFVCWYYTVGF  1231
              ++ + P+F + R +   RE  S +YS  A+V A I+SE P   + ++++ +  Y+ VG 
Sbjct  61    ALSGISPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  1232  PSDSDKAGAIFFIMLCYEFLYTGIGQFIAAYAPNATFAALTNPLILGTLVSFCGVLVPYA  1291
             P  + +      ++L      + +G FI+A AP+   A+   PL+L  L+   G  +P  
Sbjct  120   PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  1292  QIQAFWRYWIYWLNPFNYLMGSMLV  1316
              +  +W+ WIY+LNP  Y + ++  
Sbjct  180   SMPVWWQ-WIYYLNPLTYAIEALRA  203


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 132 bits (334),  Expect = 8e-37, Method: Composition-based stats.
 Identities = 46/92 (50%), Positives = 58/92 (63%), Gaps = 4/92 (4%)

Query  664  VPFGPGYDDTT--FQSCAGVGGAVRGMTYVTGDQYLA-SLTYSYSHVWRNFGILWAWWAL  720
            VP GPGY++ +   Q CA V GAV G T+V+GD YLA S  YSYSH+WRNFGIL A+W  
Sbjct  1    VPSGPGYENVSGANQVCA-VVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIF  59

Query  721  FVAVTIIATSRWKSAAEAGNSLLIPRETVAKH  752
            F+A+ +IAT    +A   G  L+  R    K 
Sbjct  60   FLALYLIATEYNSAAKSKGEVLVFKRGKAPKL  91


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 106 bits (268),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 82/156 (53%), Gaps = 10/156 (6%)

Query  813  LDNVYGWVKPGMLGALMGSSGAGKTTLLDVLAQRKTDGTIRGSIMVDGRPLPV----SFQ  868
            L NV   + PG + AL+G +GAGK+TLL ++A      T  G+I++DG+ L      S +
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIA-GLLSPT-EGTILLDGQDLTDDERKSLR  58

Query  869  RSAGYCEQLDVHEPFATVREALEFSALLRQPRHIPREEKLKYVDVIIDLLELHDLEHTLI  928
            +  GY  Q     P  TVRE L    LL+      ++ +    +  ++ L L DL    +
Sbjct  59   KEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADRPV  115

Query  929  GRVGAGLSVEQRKRVTIGVELVSKPSILIFLDEPTS  964
            G     LS  QR+RV I   L++KP +L+ LDEPT+
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPTA  150


 Score = 103 bits (260),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 15/162 (9%)

Query  118  LHESHGCVKPGEMLLVLGRPGSGCTTLLRMLSNHRLGYKAIRGDVRF--GSLTPEEASKY  175
            L      + PGE+L ++G  G+G +TLL++++          G +      LT +E    
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGL---LSPTEGTILLDGQDLTDDERKSL  57

Query  176  RGQIVMNTEEELFFPTLTVAQTLDFATRLKVPFNLPDGVTSPEAFRQETREFLLKSMGIS  235
            R +I    ++   FP LTV + L     LK       G++  E   +   E  L+ +G+ 
Sbjct  58   RKEIGYVFQDPQLFPRLTVRENLRLGLLLK-------GLSKREKDAR--AEEALEKLGLG  108

Query  236  HTSDTKVGNEYVRGVSGGERKRVSIIECLATRGSVFCWDNST  277
              +D  VG      +SGG+R+RV+I   L T+  +   D  T
Sbjct  109  DLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149


>CDD:465963 pfam19055, ABC2_membrane_7, ABC-2 type transporter.  
Length=409

 Score = 66.9 bits (164),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 47/152 (31%), Positives = 69/152 (45%), Gaps = 26/152 (17%)

Query  993   HQPSAQLFAEFDTLLLLAKGGKMVYFGDIGDNAQTVKDYFARYGAPCPANVNPAEHMIDV  1052
             HQPS  LF  FD L+LLAKGG  VY G +      V++YFA  G   P  VNP +H ID+
Sbjct  1     HQPSYTLFKMFDDLILLAKGGLTVYHGPVKK----VEEYFAGLGINVPERVNPPDHFIDI  56

Query  1053  VSG----HLSQGRDWNQV---WLES------PEHSSASRELDSIISE--AASKPPGTVDD  1097
             + G      S G D+ Q+   W+        P+    +  + +   E  +    PG   +
Sbjct  57    LEGIVKPSTSSGVDYKQLPVRWMLHNGYPVPPDMLQNADGIAASSGENSSNGTNPGVGSE  116

Query  1098  GYEFAMPLWEQTKIVTQRMSTSLYRNCDYIMN  1129
                FA  LW       Q + +++    D+I +
Sbjct  117   EQSFAGELW-------QDVKSNVELKRDHIRH  141



Lambda      K        H        a         alpha
   0.322    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1825371600


Query= TCONS_00026339

Length=1293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           189     3e-55
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  133     2e-37
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  106     3e-27
CDD:465963 pfam19055, ABC2_membrane_7, ABC-2 type transporter         67.2    6e-12


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 189 bits (481),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 67/205 (33%), Positives = 119/205 (58%), Gaps = 2/205 (1%)

Query  446  CIIRQYQIIWTDKATFAIKQISTVIQALVAGSLFYNAPDNSGGLFIKSGALFFSLLYNSL  505
             + R++   W D +    + I  ++ AL+ G+LF N   N  G   + G LFFS+L+N+ 
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLG-NQQGGLNRPGLLFFSILFNAF  59

Query  506  LAMSEVTDSF-SGRPVLIKHKYFAFFHPAAFCIAQIAADIPVLLFQISMFAVVVYFMVGL  564
             A+S ++  F   R VL +      + P+A+ +A+I +++P+ L Q  +F ++VYFMVGL
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  565  TTSAGAFFSYWIIIFVATMVMTALFRAIGALFSTFDGASKVSGFLISALIMYCGYLEPYH  624
              SAG FF + +++ +  +  ++L   I AL  +F+ AS++   ++  L++  G+  P  
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  625  AMHPWFIWIYWINPLAYAFDALLSI  649
            +M  W+ WIY++NPL YA +AL + 
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 95.8 bits (239),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 31/142 (22%), Positives = 64/142 (45%), Gaps = 1/142 (1%)

Query  1112  VTQRMSTSLYRNCDYIMNKIALHIGSALFNGFSFWMIGDSVADMQLKLFTIFNFIFVAPG  1171
             + +R     +R+    + ++   I  AL  G  F  +G+    +       F+ +F A  
Sbjct  1     LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGLLFFSILFNAFS  60

Query  1172  VINQLQPLFIERRDIYDAREKKSKMYSWVAFVTALIVSEFPYLCVCAVLYFVCWYYTVGF  1231
              ++ + P+F + R +   RE  S +YS  A+V A I+SE P   + ++++ +  Y+ VG 
Sbjct  61    ALSGISPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  1232  PSDSDKAGAIFFIMLCYEFLYT  1253
             P  + +      ++L      +
Sbjct  120   PPSAGRFFLFLLVLLLTALAAS  141


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 133 bits (337),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 46/92 (50%), Positives = 58/92 (63%), Gaps = 4/92 (4%)

Query  664  VPFGPGYDDTT--FQSCAGVGGAVRGMTYVTGDQYLA-SLTYSYSHVWRNFGILWAWWAL  720
            VP GPGY++ +   Q CA V GAV G T+V+GD YLA S  YSYSH+WRNFGIL A+W  
Sbjct  1    VPSGPGYENVSGANQVCA-VVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIF  59

Query  721  FVAVTIIATSRWKSAAEAGNSLLIPRETVAKH  752
            F+A+ +IAT    +A   G  L+  R    K 
Sbjct  60   FLALYLIATEYNSAAKSKGEVLVFKRGKAPKL  91


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 106 bits (268),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 82/156 (53%), Gaps = 10/156 (6%)

Query  813  LDNVYGWVKPGMLGALMGSSGAGKTTLLDVLAQRKTDGTIRGSIMVDGRPLPV----SFQ  868
            L NV   + PG + AL+G +GAGK+TLL ++A      T  G+I++DG+ L      S +
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIA-GLLSPT-EGTILLDGQDLTDDERKSLR  58

Query  869  RSAGYCEQLDVHEPFATVREALEFSALLRQPRHIPREEKLKYVDVIIDLLELHDLEHTLI  928
            +  GY  Q     P  TVRE L    LL+      ++ +    +  ++ L L DL    +
Sbjct  59   KEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADRPV  115

Query  929  GRVGAGLSVEQRKRVTIGVELVSKPSILIFLDEPTS  964
            G     LS  QR+RV I   L++KP +L+ LDEPT+
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPTA  150


 Score = 103 bits (260),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 15/162 (9%)

Query  118  LHESHGCVKPGEMLLVLGRPGSGCTTLLRMLSNHRLGYKAIRGDVRF--GSLTPEEASKY  175
            L      + PGE+L ++G  G+G +TLL++++          G +      LT +E    
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGL---LSPTEGTILLDGQDLTDDERKSL  57

Query  176  RGQIVMNTEEELFFPTLTVAQTLDFATRLKVPFNLPDGVTSPEAFRQETREFLLKSMGIS  235
            R +I    ++   FP LTV + L     LK       G++  E   +   E  L+ +G+ 
Sbjct  58   RKEIGYVFQDPQLFPRLTVRENLRLGLLLK-------GLSKREKDAR--AEEALEKLGLG  108

Query  236  HTSDTKVGNEYVRGVSGGERKRVSIIECLATRGSVFCWDNST  277
              +D  VG      +SGG+R+RV+I   L T+  +   D  T
Sbjct  109  DLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149


>CDD:465963 pfam19055, ABC2_membrane_7, ABC-2 type transporter.  
Length=409

 Score = 67.2 bits (165),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 47/152 (31%), Positives = 69/152 (45%), Gaps = 26/152 (17%)

Query  993   HQPSAQLFAEFDTLLLLAKGGKMVYFGDIGDNAQTVKDYFARYGAPCPANVNPAEHMIDV  1052
             HQPS  LF  FD L+LLAKGG  VY G +      V++YFA  G   P  VNP +H ID+
Sbjct  1     HQPSYTLFKMFDDLILLAKGGLTVYHGPVKK----VEEYFAGLGINVPERVNPPDHFIDI  56

Query  1053  VSG----HLSQGRDWNQV---WLES------PEHSSASRELDSIISE--AASKPPGTVDD  1097
             + G      S G D+ Q+   W+        P+    +  + +   E  +    PG   +
Sbjct  57    LEGIVKPSTSSGVDYKQLPVRWMLHNGYPVPPDMLQNADGIAASSGENSSNGTNPGVGSE  116

Query  1098  GYEFAMPLWEQTKIVTQRMSTSLYRNCDYIMN  1129
                FA  LW       Q + +++    D+I +
Sbjct  117   EQSFAGELW-------QDVKSNVELKRDHIRH  141



Lambda      K        H        a         alpha
   0.322    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1645037000


Query= TCONS_00026340

Length=840
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           144     5e-40
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  129     3e-36
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  106     2e-27
CDD:465963 pfam19055, ABC2_membrane_7, ABC-2 type transporter         66.1    9e-12


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 144 bits (366),  Expect = 5e-40, Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 99/205 (48%), Gaps = 2/205 (1%)

Query  528  VTQRMSTSLYRNCDYIMNKIALHIGSALFNGFSFWMIGDSVADMQLKLFTIFNFIFVAPG  587
            + +R     +R+    + ++   I  AL  G  F  +G+    +       F+ +F A  
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGLLFFSILFNAFS  60

Query  588  VINQLQPLFIERRDIYDAREKKSKMYSWVAFVTALIVSEFPYLCVCAVLYFVCWYYTVGF  647
             ++ + P+F + R +   RE  S +YS  A+V A I+SE P   + ++++ +  Y+ VG 
Sbjct  61   ALSGISPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  648  PSDSDKAGAIFFIMLCYEFLYTGIGQFIAAYAPNATFAALTNPLILGTLVSFCGVLVPYA  707
            P  + +      ++L      + +G FI+A AP+   A+   PL+L  L+   G  +P  
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  708  QIQAFWRYWIYWLNPFNYLMGSMLV  732
             +  +W+ WIY+LNP  Y + ++  
Sbjct  180  SMPVWWQ-WIYYLNPLTYAIEALRA  203


 Score = 76.2 bits (188),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 22/65 (34%), Positives = 39/65 (60%), Gaps = 0/65 (0%)

Query  1    MTALFRAIGALFSTFDGASKVSGFLISALIMYCGYLEPYHAMHPWFIWIYWINPLAYAFD  60
             ++L   I AL  +F+ AS++   ++  L++  G+  P  +M  W+ WIY++NPL YA +
Sbjct  140  ASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPIDSMPVWWQWIYYLNPLTYAIE  199

Query  61   ALLSI  65
            AL + 
Sbjct  200  ALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 129 bits (327),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 46/92 (50%), Positives = 58/92 (63%), Gaps = 4/92 (4%)

Query  80   VPFGPGYDDTT--FQSCAGVGGAVRGMTYVTGDQYLA-SLTYSYSHVWRNFGILWAWWAL  136
            VP GPGY++ +   Q CA V GAV G T+V+GD YLA S  YSYSH+WRNFGIL A+W  
Sbjct  1    VPSGPGYENVSGANQVCA-VVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIF  59

Query  137  FVAVTIIATSRWKSAAEAGNSLLIPRETVAKH  168
            F+A+ +IAT    +A   G  L+  R    K 
Sbjct  60   FLALYLIATEYNSAAKSKGEVLVFKRGKAPKL  91


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 106 bits (268),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 82/156 (53%), Gaps = 10/156 (6%)

Query  229  LDNVYGWVKPGMLGALMGSSGAGKTTLLDVLAQRKTDGTIRGSIMVDGRPLPV----SFQ  284
            L NV   + PG + AL+G +GAGK+TLL ++A      T  G+I++DG+ L      S +
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIA-GLLSPT-EGTILLDGQDLTDDERKSLR  58

Query  285  RSAGYCEQLDVHEPFATVREALEFSALLRQPRHIPREEKLKYVDVIIDLLELHDLEHTLI  344
            +  GY  Q     P  TVRE L    LL+      ++ +    +  ++ L L DL    +
Sbjct  59   KEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADRPV  115

Query  345  GRVGAGLSVEQRKRVTIGVELVSKPSILIFLDEPTS  380
            G     LS  QR+RV I   L++KP +L+ LDEPT+
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPTA  150


>CDD:465963 pfam19055, ABC2_membrane_7, ABC-2 type transporter.  
Length=409

 Score = 66.1 bits (162),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 47/152 (31%), Positives = 69/152 (45%), Gaps = 26/152 (17%)

Query  409  HQPSAQLFAEFDTLLLLAKGGKMVYFGDIGDNAQTVKDYFARYGAPCPANVNPAEHMIDV  468
            HQPS  LF  FD L+LLAKGG  VY G +      V++YFA  G   P  VNP +H ID+
Sbjct  1    HQPSYTLFKMFDDLILLAKGGLTVYHGPVKK----VEEYFAGLGINVPERVNPPDHFIDI  56

Query  469  VSG----HLSQGRDWNQV---WLES------PEHSSASRELDSIISE--AASKPPGTVDD  513
            + G      S G D+ Q+   W+        P+    +  + +   E  +    PG   +
Sbjct  57   LEGIVKPSTSSGVDYKQLPVRWMLHNGYPVPPDMLQNADGIAASSGENSSNGTNPGVGSE  116

Query  514  GYEFAMPLWEQTKIVTQRMSTSLYRNCDYIMN  545
               FA  LW       Q + +++    D+I +
Sbjct  117  EQSFAGELW-------QDVKSNVELKRDHIRH  141



Lambda      K        H        a         alpha
   0.323    0.138    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1069457930


Query= TCONS_00020970

Length=1424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           186     3e-54
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  132     8e-37
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  106     3e-27
CDD:465963 pfam19055, ABC2_membrane_7, ABC-2 type transporter         66.9    1e-11


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 186 bits (474),  Expect = 3e-54, Method: Composition-based stats.
 Identities = 67/205 (33%), Positives = 119/205 (58%), Gaps = 2/205 (1%)

Query  446  CIIRQYQIIWTDKATFAIKQISTVIQALVAGSLFYNAPDNSGGLFIKSGALFFSLLYNSL  505
             + R++   W D +    + I  ++ AL+ G+LF N   N  G   + G LFFS+L+N+ 
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLG-NQQGGLNRPGLLFFSILFNAF  59

Query  506  LAMSEVTDSF-SGRPVLIKHKYFAFFHPAAFCIAQIAADIPVLLFQISMFAVVVYFMVGL  564
             A+S ++  F   R VL +      + P+A+ +A+I +++P+ L Q  +F ++VYFMVGL
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  565  TTSAGAFFSYWIIIFVATMVMTALFRAIGALFSTFDGASKVSGFLISALIMYCGYLEPYH  624
              SAG FF + +++ +  +  ++L   I AL  +F+ AS++   ++  L++  G+  P  
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  625  AMHPWFIWIYWINPLAYAFDALLSI  649
            +M  W+ WIY++NPL YA +AL + 
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 148 bits (377),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 99/205 (48%), Gaps = 2/205 (1%)

Query  1112  VTQRMSTSLYRNCDYIMNKIALHIGSALFNGFSFWMIGDSVADMQLKLFTIFNFIFVAPG  1171
             + +R     +R+    + ++   I  AL  G  F  +G+    +       F+ +F A  
Sbjct  1     LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGLLFFSILFNAFS  60

Query  1172  VINQLQPLFIERRDIYDAREKKSKMYSWVAFVTALIVSEFPYLCVCAVLYFVCWYYTVGF  1231
              ++ + P+F + R +   RE  S +YS  A+V A I+SE P   + ++++ +  Y+ VG 
Sbjct  61    ALSGISPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  1232  PSDSDKAGAIFFIMLCYEFLYTGIGQFIAAYAPNATFAALTNPLILGTLVSFCGVLVPYA  1291
             P  + +      ++L      + +G FI+A AP+   A+   PL+L  L+   G  +P  
Sbjct  120   PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  1292  QIQAFWRYWIYWLNPFNYLMGSMLV  1316
              +  +W+ WIY+LNP  Y + ++  
Sbjct  180   SMPVWWQ-WIYYLNPLTYAIEALRA  203


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 132 bits (334),  Expect = 8e-37, Method: Composition-based stats.
 Identities = 46/92 (50%), Positives = 58/92 (63%), Gaps = 4/92 (4%)

Query  664  VPFGPGYDDTT--FQSCAGVGGAVRGMTYVTGDQYLA-SLTYSYSHVWRNFGILWAWWAL  720
            VP GPGY++ +   Q CA V GAV G T+V+GD YLA S  YSYSH+WRNFGIL A+W  
Sbjct  1    VPSGPGYENVSGANQVCA-VVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIF  59

Query  721  FVAVTIIATSRWKSAAEAGNSLLIPRETVAKH  752
            F+A+ +IAT    +A   G  L+  R    K 
Sbjct  60   FLALYLIATEYNSAAKSKGEVLVFKRGKAPKL  91


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 106 bits (268),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 82/156 (53%), Gaps = 10/156 (6%)

Query  813  LDNVYGWVKPGMLGALMGSSGAGKTTLLDVLAQRKTDGTIRGSIMVDGRPLPV----SFQ  868
            L NV   + PG + AL+G +GAGK+TLL ++A      T  G+I++DG+ L      S +
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIA-GLLSPT-EGTILLDGQDLTDDERKSLR  58

Query  869  RSAGYCEQLDVHEPFATVREALEFSALLRQPRHIPREEKLKYVDVIIDLLELHDLEHTLI  928
            +  GY  Q     P  TVRE L    LL+      ++ +    +  ++ L L DL    +
Sbjct  59   KEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADRPV  115

Query  929  GRVGAGLSVEQRKRVTIGVELVSKPSILIFLDEPTS  964
            G     LS  QR+RV I   L++KP +L+ LDEPT+
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPTA  150


 Score = 103 bits (260),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 15/162 (9%)

Query  118  LHESHGCVKPGEMLLVLGRPGSGCTTLLRMLSNHRLGYKAIRGDVRF--GSLTPEEASKY  175
            L      + PGE+L ++G  G+G +TLL++++          G +      LT +E    
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGL---LSPTEGTILLDGQDLTDDERKSL  57

Query  176  RGQIVMNTEEELFFPTLTVAQTLDFATRLKVPFNLPDGVTSPEAFRQETREFLLKSMGIS  235
            R +I    ++   FP LTV + L     LK       G++  E   +   E  L+ +G+ 
Sbjct  58   RKEIGYVFQDPQLFPRLTVRENLRLGLLLK-------GLSKREKDAR--AEEALEKLGLG  108

Query  236  HTSDTKVGNEYVRGVSGGERKRVSIIECLATRGSVFCWDNST  277
              +D  VG      +SGG+R+RV+I   L T+  +   D  T
Sbjct  109  DLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149


>CDD:465963 pfam19055, ABC2_membrane_7, ABC-2 type transporter.  
Length=409

 Score = 66.9 bits (164),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 47/152 (31%), Positives = 69/152 (45%), Gaps = 26/152 (17%)

Query  993   HQPSAQLFAEFDTLLLLAKGGKMVYFGDIGDNAQTVKDYFARYGAPCPANVNPAEHMIDV  1052
             HQPS  LF  FD L+LLAKGG  VY G +      V++YFA  G   P  VNP +H ID+
Sbjct  1     HQPSYTLFKMFDDLILLAKGGLTVYHGPVKK----VEEYFAGLGINVPERVNPPDHFIDI  56

Query  1053  VSG----HLSQGRDWNQV---WLES------PEHSSASRELDSIISE--AASKPPGTVDD  1097
             + G      S G D+ Q+   W+        P+    +  + +   E  +    PG   +
Sbjct  57    LEGIVKPSTSSGVDYKQLPVRWMLHNGYPVPPDMLQNADGIAASSGENSSNGTNPGVGSE  116

Query  1098  GYEFAMPLWEQTKIVTQRMSTSLYRNCDYIMN  1129
                FA  LW       Q + +++    D+I +
Sbjct  117   EQSFAGELW-------QDVKSNVELKRDHIRH  141



Lambda      K        H        a         alpha
   0.322    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1825371600


Query= TCONS_00020971

Length=277


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00020972

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00026341

Length=148
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460795 pfam03073, TspO_MBR, TspO/MBR family. Tryptophan-rich ...  132     5e-41


>CDD:460795 pfam03073, TspO_MBR, TspO/MBR family.  Tryptophan-rich sensory 
protein (TspO) is an integral membrane protein that acts as 
a negative regulator of the expression of specific photosynthesis 
genes in response to oxygen/light. It is involved in 
the efflux of porphyrin intermediates from the cell. This reduces 
the activity of coproporphyrinogen III oxidase, which 
is thought to lead to the accumulation of a putative repressor 
molecule that inhibits the expression of specific photosynthesis 
genes. Several conserved aromatic residues are necessary 
for TspO function: they are thought to be involved in 
binding porphyrin intermediates. In, the rat mitochondrial peripheral 
benzodiazepine receptor (MBR) was shown to not only 
retain its structure within a bacterial outer membrane, but 
also to be able to functionally substitute for TspO in TspO- 
mutants, and to act in a similar manner to TspO in its in 
situ location: the outer mitochondrial membrane. The biological 
significance of MBR remains unclear, however. It is thought 
to be involved in a variety of cellular functions, including 
cholesterol transport in steroidogenic tissues.
Length=144

 Score = 132 bits (334),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 55/129 (43%), Positives = 72/129 (56%), Gaps = 4/129 (3%)

Query  18   GHTKELYSRLRQPPLRPPAWVFGPVWTVLYGMMGYAAHHATASTTLLTPATAVASFQTLY  77
                + Y+ L++PP  PP WVF PVWTVLY +MG AA+    +        A+     LY
Sbjct  18   SSISDWYASLKKPPWTPPNWVFPPVWTVLYILMGIAAYLVWRAGGGSGRKLAL----GLY  73

Query  78   TTQLVLNYLWMPLFFGARKPGWALADIVALGGTVGKLMAMWWDFDRTAFWMMLPYAGWLC  137
              QL LN LW PLFFG R PG AL DI+AL G V   +  ++   + A  +++PY  WL 
Sbjct  74   GLQLALNLLWSPLFFGLRSPGLALVDILALWGLVLATILAFYRISKLAALLLVPYLLWLS  133

Query  138  FAAYLNVSV  146
            FA YLN  +
Sbjct  134  FATYLNYGI  142



Lambda      K        H        a         alpha
   0.326    0.136    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00020973

Length=112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460795 pfam03073, TspO_MBR, TspO/MBR family. Tryptophan-rich ...  92.3    6e-26


>CDD:460795 pfam03073, TspO_MBR, TspO/MBR family.  Tryptophan-rich sensory 
protein (TspO) is an integral membrane protein that acts as 
a negative regulator of the expression of specific photosynthesis 
genes in response to oxygen/light. It is involved in 
the efflux of porphyrin intermediates from the cell. This reduces 
the activity of coproporphyrinogen III oxidase, which 
is thought to lead to the accumulation of a putative repressor 
molecule that inhibits the expression of specific photosynthesis 
genes. Several conserved aromatic residues are necessary 
for TspO function: they are thought to be involved in 
binding porphyrin intermediates. In, the rat mitochondrial peripheral 
benzodiazepine receptor (MBR) was shown to not only 
retain its structure within a bacterial outer membrane, but 
also to be able to functionally substitute for TspO in TspO- 
mutants, and to act in a similar manner to TspO in its in 
situ location: the outer mitochondrial membrane. The biological 
significance of MBR remains unclear, however. It is thought 
to be involved in a variety of cellular functions, including 
cholesterol transport in steroidogenic tissues.
Length=144

 Score = 92.3 bits (230),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 39/98 (40%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query  1    MMGYAAHHATASTTLLTPATAVASFQTLYTTQLVLNYLWMPLFFGARKPGWALADIVALG  60
            +MG AA+    +        A+     LY  QL LN LW PLFFG R PG AL DI+AL 
Sbjct  49   LMGIAAYLVWRAGGGSGRKLAL----GLYGLQLALNLLWSPLFFGLRSPGLALVDILALW  104

Query  61   GTVGKLMAMWWDFDRTAFWMMLPYAGWLCFAAYLNVSV  98
            G V   +  ++   + A  +++PY  WL FA YLN  +
Sbjct  105  GLVLATILAFYRISKLAALLLVPYLLWLSFATYLNYGI  142



Lambda      K        H        a         alpha
   0.327    0.136    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00020974

Length=179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460795 pfam03073, TspO_MBR, TspO/MBR family. Tryptophan-rich ...  142     1e-44


>CDD:460795 pfam03073, TspO_MBR, TspO/MBR family.  Tryptophan-rich sensory 
protein (TspO) is an integral membrane protein that acts as 
a negative regulator of the expression of specific photosynthesis 
genes in response to oxygen/light. It is involved in 
the efflux of porphyrin intermediates from the cell. This reduces 
the activity of coproporphyrinogen III oxidase, which 
is thought to lead to the accumulation of a putative repressor 
molecule that inhibits the expression of specific photosynthesis 
genes. Several conserved aromatic residues are necessary 
for TspO function: they are thought to be involved in 
binding porphyrin intermediates. In, the rat mitochondrial peripheral 
benzodiazepine receptor (MBR) was shown to not only 
retain its structure within a bacterial outer membrane, but 
also to be able to functionally substitute for TspO in TspO- 
mutants, and to act in a similar manner to TspO in its in 
situ location: the outer mitochondrial membrane. The biological 
significance of MBR remains unclear, however. It is thought 
to be involved in a variety of cellular functions, including 
cholesterol transport in steroidogenic tissues.
Length=144

 Score = 142 bits (361),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 63/148 (43%), Positives = 81/148 (55%), Gaps = 6/148 (4%)

Query  18   AVATPIGVGSLVGYLVNRLGHTKELYSRLRQPPLRPPAWVFGPVWTVLYGMMGYAAHHAT  77
            AVA P+ VG L G          + Y+ L++PP  PP WVF PVWTVLY +MG AA+   
Sbjct  1    AVALPLAVGLLGGLFTR--SSISDWYASLKKPPWTPPNWVFPPVWTVLYILMGIAAYLVW  58

Query  78   ASTTLLTPATAVASFQTLYTTQLVLNYLWMPLFFGARKPGWALADIVALGGTVGKLMAMW  137
             +        A+     LY  QL LN LW PLFFG R PG AL DI+AL G V   +  +
Sbjct  59   RAGGGSGRKLAL----GLYGLQLALNLLWSPLFFGLRSPGLALVDILALWGLVLATILAF  114

Query  138  WDFDRTAFWMMLPYAGWLCFAAYLNVSV  165
            +   + A  +++PY  WL FA YLN  +
Sbjct  115  YRISKLAALLLVPYLLWLSFATYLNYGI  142



Lambda      K        H        a         alpha
   0.326    0.139    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00026343

Length=179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460795 pfam03073, TspO_MBR, TspO/MBR family. Tryptophan-rich ...  142     1e-44


>CDD:460795 pfam03073, TspO_MBR, TspO/MBR family.  Tryptophan-rich sensory 
protein (TspO) is an integral membrane protein that acts as 
a negative regulator of the expression of specific photosynthesis 
genes in response to oxygen/light. It is involved in 
the efflux of porphyrin intermediates from the cell. This reduces 
the activity of coproporphyrinogen III oxidase, which 
is thought to lead to the accumulation of a putative repressor 
molecule that inhibits the expression of specific photosynthesis 
genes. Several conserved aromatic residues are necessary 
for TspO function: they are thought to be involved in 
binding porphyrin intermediates. In, the rat mitochondrial peripheral 
benzodiazepine receptor (MBR) was shown to not only 
retain its structure within a bacterial outer membrane, but 
also to be able to functionally substitute for TspO in TspO- 
mutants, and to act in a similar manner to TspO in its in 
situ location: the outer mitochondrial membrane. The biological 
significance of MBR remains unclear, however. It is thought 
to be involved in a variety of cellular functions, including 
cholesterol transport in steroidogenic tissues.
Length=144

 Score = 142 bits (361),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 63/148 (43%), Positives = 81/148 (55%), Gaps = 6/148 (4%)

Query  18   AVATPIGVGSLVGYLVNRLGHTKELYSRLRQPPLRPPAWVFGPVWTVLYGMMGYAAHHAT  77
            AVA P+ VG L G          + Y+ L++PP  PP WVF PVWTVLY +MG AA+   
Sbjct  1    AVALPLAVGLLGGLFTR--SSISDWYASLKKPPWTPPNWVFPPVWTVLYILMGIAAYLVW  58

Query  78   ASTTLLTPATAVASFQTLYTTQLVLNYLWMPLFFGARKPGWALADIVALGGTVGKLMAMW  137
             +        A+     LY  QL LN LW PLFFG R PG AL DI+AL G V   +  +
Sbjct  59   RAGGGSGRKLAL----GLYGLQLALNLLWSPLFFGLRSPGLALVDILALWGLVLATILAF  114

Query  138  WDFDRTAFWMMLPYAGWLCFAAYLNVSV  165
            +   + A  +++PY  WL FA YLN  +
Sbjct  115  YRISKLAALLLVPYLLWLSFATYLNYGI  142



Lambda      K        H        a         alpha
   0.326    0.139    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00026342

Length=179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460795 pfam03073, TspO_MBR, TspO/MBR family. Tryptophan-rich ...  142     1e-44


>CDD:460795 pfam03073, TspO_MBR, TspO/MBR family.  Tryptophan-rich sensory 
protein (TspO) is an integral membrane protein that acts as 
a negative regulator of the expression of specific photosynthesis 
genes in response to oxygen/light. It is involved in 
the efflux of porphyrin intermediates from the cell. This reduces 
the activity of coproporphyrinogen III oxidase, which 
is thought to lead to the accumulation of a putative repressor 
molecule that inhibits the expression of specific photosynthesis 
genes. Several conserved aromatic residues are necessary 
for TspO function: they are thought to be involved in 
binding porphyrin intermediates. In, the rat mitochondrial peripheral 
benzodiazepine receptor (MBR) was shown to not only 
retain its structure within a bacterial outer membrane, but 
also to be able to functionally substitute for TspO in TspO- 
mutants, and to act in a similar manner to TspO in its in 
situ location: the outer mitochondrial membrane. The biological 
significance of MBR remains unclear, however. It is thought 
to be involved in a variety of cellular functions, including 
cholesterol transport in steroidogenic tissues.
Length=144

 Score = 142 bits (361),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 63/148 (43%), Positives = 81/148 (55%), Gaps = 6/148 (4%)

Query  18   AVATPIGVGSLVGYLVNRLGHTKELYSRLRQPPLRPPAWVFGPVWTVLYGMMGYAAHHAT  77
            AVA P+ VG L G          + Y+ L++PP  PP WVF PVWTVLY +MG AA+   
Sbjct  1    AVALPLAVGLLGGLFTR--SSISDWYASLKKPPWTPPNWVFPPVWTVLYILMGIAAYLVW  58

Query  78   ASTTLLTPATAVASFQTLYTTQLVLNYLWMPLFFGARKPGWALADIVALGGTVGKLMAMW  137
             +        A+     LY  QL LN LW PLFFG R PG AL DI+AL G V   +  +
Sbjct  59   RAGGGSGRKLAL----GLYGLQLALNLLWSPLFFGLRSPGLALVDILALWGLVLATILAF  114

Query  138  WDFDRTAFWMMLPYAGWLCFAAYLNVSV  165
            +   + A  +++PY  WL FA YLN  +
Sbjct  115  YRISKLAALLLVPYLLWLSFATYLNYGI  142



Lambda      K        H        a         alpha
   0.326    0.139    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00020975

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460795 pfam03073, TspO_MBR, TspO/MBR family. Tryptophan-rich ...  147     1e-46


>CDD:460795 pfam03073, TspO_MBR, TspO/MBR family.  Tryptophan-rich sensory 
protein (TspO) is an integral membrane protein that acts as 
a negative regulator of the expression of specific photosynthesis 
genes in response to oxygen/light. It is involved in 
the efflux of porphyrin intermediates from the cell. This reduces 
the activity of coproporphyrinogen III oxidase, which 
is thought to lead to the accumulation of a putative repressor 
molecule that inhibits the expression of specific photosynthesis 
genes. Several conserved aromatic residues are necessary 
for TspO function: they are thought to be involved in 
binding porphyrin intermediates. In, the rat mitochondrial peripheral 
benzodiazepine receptor (MBR) was shown to not only 
retain its structure within a bacterial outer membrane, but 
also to be able to functionally substitute for TspO in TspO- 
mutants, and to act in a similar manner to TspO in its in 
situ location: the outer mitochondrial membrane. The biological 
significance of MBR remains unclear, however. It is thought 
to be involved in a variety of cellular functions, including 
cholesterol transport in steroidogenic tissues.
Length=144

 Score = 147 bits (374),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 64/146 (44%), Positives = 82/146 (56%), Gaps = 4/146 (3%)

Query  18   AVATPIGVGSLVGYLVNSHTKELYSRLRQPPLRPPAWVFGPVWTVLYGMMGYAAHHATAS  77
            AVA P+ VG L G    S   + Y+ L++PP  PP WVF PVWTVLY +MG AA+    +
Sbjct  1    AVALPLAVGLLGGLFTRSSISDWYASLKKPPWTPPNWVFPPVWTVLYILMGIAAYLVWRA  60

Query  78   TTLLTPATAVASFQTLYTTQLVLNYLWMPLFFGARKPGWALADIVALGGTVGKLMAMWWD  137
                    A+     LY  QL LN LW PLFFG R PG AL DI+AL G V   +  ++ 
Sbjct  61   GGGSGRKLAL----GLYGLQLALNLLWSPLFFGLRSPGLALVDILALWGLVLATILAFYR  116

Query  138  FDRTAFWMMLPYAGWLCFAAYLNVSV  163
              + A  +++PY  WL FA YLN  +
Sbjct  117  ISKLAALLLVPYLLWLSFATYLNYGI  142



Lambda      K        H        a         alpha
   0.326    0.138    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00020977

Length=845
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter. T...  255     1e-79
CDD:432807 pfam12821, ThrE_2, Threonine/Serine exporter, ThrE. Th...  65.2    4e-13


>CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter.  ThrE is 
a family of bacterial and Archaeal proteins that catalyze the 
export of L-threonine from the cell. UniProtKB:Q79VD1 has 
been characterized as being necessary for this export. The 
domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent 
efflux of threonine and serine.
Length=241

 Score = 255 bits (653),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 80/252 (32%), Positives = 134/252 (53%), Gaps = 12/252 (5%)

Query  406  RYIMQLCRALMRYGAPTHRLEEYMTMTARVLEV-EGQFLYLPGCMIMSFDDPVTRTAEVK  464
             + ++  R L+  GA T+R+E+ M   AR L + E +    P  +I+SFDD       V+
Sbjct  1    DFALRAGRILLESGAETYRVEDTMNRIARALGIDECEVFVTPTGIIISFDDDDESITTVR  60

Query  465  LVRSTQGVDLGRLAETHNVYKNVVHDLIGVEEAIQELDEIMKRKPRFNKWILVPVYGLAG  524
             VRS  G++L +L+E + + + +VH  I +EEA + LDEI +  PR+ +W++V   GLA 
Sbjct  61   RVRSR-GINLEKLSEVNELSRRIVHGEISLEEAEKRLDEIERSPPRYPRWLVVLAAGLAS  119

Query  525  AAVGPFAFDARPIDMPIIFILGSLVGLMQHVISPRSTLYSNVFEVTAAVLTSFLARAFGS  584
            AA     F    ID  + F+ G L GL++ V+  R  L S  FE  AA + S LA    S
Sbjct  120  AAFALL-FGGDWIDFLVAFLAGGLGGLLRLVL-NRRGLNSFFFEAVAAFVASLLALLAVS  177

Query  585  IRITVDGQKQFLFCFSALAQSSIALILPGFMVLCSSLELQSHQMIAGSIRMVFAIIYSLF  644
            + + ++          A+   SI L++PG  +  +  +L +  +++G  R+V AI+ +L 
Sbjct  178  LGLGIN--------PDAIIIGSIMLLVPGLPLTNAVRDLIAGDLVSGLARLVEAILIALA  229

Query  645  LGYGITVGTTVY  656
            + +GI +   + 
Sbjct  230  IAFGIALALALL  241


>CDD:432807 pfam12821, ThrE_2, Threonine/Serine exporter, ThrE.  ThrE_2 is 
a family of membrane proteins involved in the export of threonine 
and serine. L-threonine, L-serine are both substrates 
for the exporter. The exporter exhibits nine-ten predicted 
transmembrane-spanning helices with long charged C and N termini 
and an amphipathic helix present within the N-terminus. 
L-Threonine can be made by the amino acid-producing bacterium 
Corynebacterium glutamicum, but the potential for amino 
acid formation can be considerably improved by reducing its 
intracellular degradation into glycine and increasing its export 
by this exporter. Members of the family are found in Bacteria, 
Archaea, and the fungal kingdoms, and the family can 
exist either as a single long polypeptide chain or as two short 
polypeptides. All family members show an extended hydrophilic 
N-terminal domain with weak sequence similarity to portions 
of hydrolases (proteases, peptidases, and glycosidases); 
this suggests that since this region is cytoplasmic to the 
membrane it may be generating the transport substrate, so 
may imply that threonine may not be the primary substrate and 
the ThrE has a subsidiary function.
Length=129

 Score = 65.2 bits (160),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 28/150 (19%), Positives = 53/150 (35%), Gaps = 21/150 (14%)

Query  682  HFIFVPIFVICLAVINQAKWKQVPVMIFIATCGYITNYFSTTKLGSRSEVANTVGAFTLG  741
              IF  I  +   ++     + +         G++         GS   +A+ + A  +G
Sbjct  1    QLIFAFIATLGFGILFNVPKRALFYAGIGGAVGWLVYLLLMH-FGSSIALASFLAALAIG  59

Query  742  TLGNLYSRLWHGHAATAILPGIFVLVPSGLASSGSLIAGINYANQVRENLHKSGNGTDTS  801
             L  +++R         ++PGI  LVP G A +            V+ N   +       
Sbjct  60   LLSEIFARRLKAPVTVFLVPGIIPLVPGGGAYNTMY-------YLVQGNYALA-------  105

Query  802  SQDTSIASLGFGMIQVAIGITVGLFIAALV  831
                   S G   + +A  I +GL + +L+
Sbjct  106  ------VSYGLETLFIAGAIALGLVLVSLI  129



Lambda      K        H        a         alpha
   0.318    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1076635500


Query= TCONS_00020976

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter. T...  250     2e-78
CDD:432807 pfam12821, ThrE_2, Threonine/Serine exporter, ThrE. Th...  62.2    3e-12


>CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter.  ThrE is 
a family of bacterial and Archaeal proteins that catalyze the 
export of L-threonine from the cell. UniProtKB:Q79VD1 has 
been characterized as being necessary for this export. The 
domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent 
efflux of threonine and serine.
Length=241

 Score = 250 bits (640),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 80/252 (32%), Positives = 134/252 (53%), Gaps = 12/252 (5%)

Query  301  RYIMQLCRALMRYGAPTHRLEEYMTMTARVLEV-EGQFLYLPGCMIMSFDDPVTRTAEVK  359
             + ++  R L+  GA T+R+E+ M   AR L + E +    P  +I+SFDD       V+
Sbjct  1    DFALRAGRILLESGAETYRVEDTMNRIARALGIDECEVFVTPTGIIISFDDDDESITTVR  60

Query  360  LVRSTQGVDLGRLAETHNVYKNVVHDLIGVEEAIQELDEIMKRKPRFNKWILVPVYGLAG  419
             VRS  G++L +L+E + + + +VH  I +EEA + LDEI +  PR+ +W++V   GLA 
Sbjct  61   RVRSR-GINLEKLSEVNELSRRIVHGEISLEEAEKRLDEIERSPPRYPRWLVVLAAGLAS  119

Query  420  AAVGPFAFDARPIDMPIIFILGSLVGLMQHVISPRSTLYSNVFEVTAAVLTSFLARAFGS  479
            AA     F    ID  + F+ G L GL++ V+  R  L S  FE  AA + S LA    S
Sbjct  120  AAFALL-FGGDWIDFLVAFLAGGLGGLLRLVL-NRRGLNSFFFEAVAAFVASLLALLAVS  177

Query  480  IRITVDGQKQFLFCFSALAQSSIALILPGFMVLCSSLELQSHQMIAGSIRMVFAIIYSLF  539
            + + ++          A+   SI L++PG  +  +  +L +  +++G  R+V AI+ +L 
Sbjct  178  LGLGIN--------PDAIIIGSIMLLVPGLPLTNAVRDLIAGDLVSGLARLVEAILIALA  229

Query  540  LGYGITVGTTVY  551
            + +GI +   + 
Sbjct  230  IAFGIALALALL  241


>CDD:432807 pfam12821, ThrE_2, Threonine/Serine exporter, ThrE.  ThrE_2 is 
a family of membrane proteins involved in the export of threonine 
and serine. L-threonine, L-serine are both substrates 
for the exporter. The exporter exhibits nine-ten predicted 
transmembrane-spanning helices with long charged C and N termini 
and an amphipathic helix present within the N-terminus. 
L-Threonine can be made by the amino acid-producing bacterium 
Corynebacterium glutamicum, but the potential for amino 
acid formation can be considerably improved by reducing its 
intracellular degradation into glycine and increasing its export 
by this exporter. Members of the family are found in Bacteria, 
Archaea, and the fungal kingdoms, and the family can 
exist either as a single long polypeptide chain or as two short 
polypeptides. All family members show an extended hydrophilic 
N-terminal domain with weak sequence similarity to portions 
of hydrolases (proteases, peptidases, and glycosidases); 
this suggests that since this region is cytoplasmic to the 
membrane it may be generating the transport substrate, so 
may imply that threonine may not be the primary substrate and 
the ThrE has a subsidiary function.
Length=129

 Score = 62.2 bits (152),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 28/150 (19%), Positives = 53/150 (35%), Gaps = 21/150 (14%)

Query  577  HFIFVPIFVICLAVINQAKWKQVPVMIFIATCGYITNYFSTTKLGSRSEVANTVGAFTLG  636
              IF  I  +   ++     + +         G++         GS   +A+ + A  +G
Sbjct  1    QLIFAFIATLGFGILFNVPKRALFYAGIGGAVGWLVYLLLMH-FGSSIALASFLAALAIG  59

Query  637  TLGNLYSRLWHGHAATAILPGIFVLVPSGLASSGSLIAGINYANQVRENLHKSGNGTDTS  696
             L  +++R         ++PGI  LVP G A +            V+ N   +       
Sbjct  60   LLSEIFARRLKAPVTVFLVPGIIPLVPGGGAYNTMY-------YLVQGNYALA-------  105

Query  697  SQDTSIASLGFGMIQVAIGITVGLFIAALV  726
                   S G   + +A  I +GL + +L+
Sbjct  106  ------VSYGLETLFIAGAIALGLVLVSLI  129



Lambda      K        H        a         alpha
   0.319    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00020978

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter. T...  250     2e-78
CDD:432807 pfam12821, ThrE_2, Threonine/Serine exporter, ThrE. Th...  62.2    3e-12


>CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter.  ThrE is 
a family of bacterial and Archaeal proteins that catalyze the 
export of L-threonine from the cell. UniProtKB:Q79VD1 has 
been characterized as being necessary for this export. The 
domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent 
efflux of threonine and serine.
Length=241

 Score = 250 bits (640),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 80/252 (32%), Positives = 134/252 (53%), Gaps = 12/252 (5%)

Query  301  RYIMQLCRALMRYGAPTHRLEEYMTMTARVLEV-EGQFLYLPGCMIMSFDDPVTRTAEVK  359
             + ++  R L+  GA T+R+E+ M   AR L + E +    P  +I+SFDD       V+
Sbjct  1    DFALRAGRILLESGAETYRVEDTMNRIARALGIDECEVFVTPTGIIISFDDDDESITTVR  60

Query  360  LVRSTQGVDLGRLAETHNVYKNVVHDLIGVEEAIQELDEIMKRKPRFNKWILVPVYGLAG  419
             VRS  G++L +L+E + + + +VH  I +EEA + LDEI +  PR+ +W++V   GLA 
Sbjct  61   RVRSR-GINLEKLSEVNELSRRIVHGEISLEEAEKRLDEIERSPPRYPRWLVVLAAGLAS  119

Query  420  AAVGPFAFDARPIDMPIIFILGSLVGLMQHVISPRSTLYSNVFEVTAAVLTSFLARAFGS  479
            AA     F    ID  + F+ G L GL++ V+  R  L S  FE  AA + S LA    S
Sbjct  120  AAFALL-FGGDWIDFLVAFLAGGLGGLLRLVL-NRRGLNSFFFEAVAAFVASLLALLAVS  177

Query  480  IRITVDGQKQFLFCFSALAQSSIALILPGFMVLCSSLELQSHQMIAGSIRMVFAIIYSLF  539
            + + ++          A+   SI L++PG  +  +  +L +  +++G  R+V AI+ +L 
Sbjct  178  LGLGIN--------PDAIIIGSIMLLVPGLPLTNAVRDLIAGDLVSGLARLVEAILIALA  229

Query  540  LGYGITVGTTVY  551
            + +GI +   + 
Sbjct  230  IAFGIALALALL  241


>CDD:432807 pfam12821, ThrE_2, Threonine/Serine exporter, ThrE.  ThrE_2 is 
a family of membrane proteins involved in the export of threonine 
and serine. L-threonine, L-serine are both substrates 
for the exporter. The exporter exhibits nine-ten predicted 
transmembrane-spanning helices with long charged C and N termini 
and an amphipathic helix present within the N-terminus. 
L-Threonine can be made by the amino acid-producing bacterium 
Corynebacterium glutamicum, but the potential for amino 
acid formation can be considerably improved by reducing its 
intracellular degradation into glycine and increasing its export 
by this exporter. Members of the family are found in Bacteria, 
Archaea, and the fungal kingdoms, and the family can 
exist either as a single long polypeptide chain or as two short 
polypeptides. All family members show an extended hydrophilic 
N-terminal domain with weak sequence similarity to portions 
of hydrolases (proteases, peptidases, and glycosidases); 
this suggests that since this region is cytoplasmic to the 
membrane it may be generating the transport substrate, so 
may imply that threonine may not be the primary substrate and 
the ThrE has a subsidiary function.
Length=129

 Score = 62.2 bits (152),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 28/150 (19%), Positives = 53/150 (35%), Gaps = 21/150 (14%)

Query  577  HFIFVPIFVICLAVINQAKWKQVPVMIFIATCGYITNYFSTTKLGSRSEVANTVGAFTLG  636
              IF  I  +   ++     + +         G++         GS   +A+ + A  +G
Sbjct  1    QLIFAFIATLGFGILFNVPKRALFYAGIGGAVGWLVYLLLMH-FGSSIALASFLAALAIG  59

Query  637  TLGNLYSRLWHGHAATAILPGIFVLVPSGLASSGSLIAGINYANQVRENLHKSGNGTDTS  696
             L  +++R         ++PGI  LVP G A +            V+ N   +       
Sbjct  60   LLSEIFARRLKAPVTVFLVPGIIPLVPGGGAYNTMY-------YLVQGNYALA-------  105

Query  697  SQDTSIASLGFGMIQVAIGITVGLFIAALV  726
                   S G   + +A  I +GL + +L+
Sbjct  106  ------VSYGLETLFIAGAIALGLVLVSLI  129



Lambda      K        H        a         alpha
   0.319    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00020980

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter. T...  250     2e-78
CDD:432807 pfam12821, ThrE_2, Threonine/Serine exporter, ThrE. Th...  62.2    3e-12


>CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter.  ThrE is 
a family of bacterial and Archaeal proteins that catalyze the 
export of L-threonine from the cell. UniProtKB:Q79VD1 has 
been characterized as being necessary for this export. The 
domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent 
efflux of threonine and serine.
Length=241

 Score = 250 bits (640),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 80/252 (32%), Positives = 134/252 (53%), Gaps = 12/252 (5%)

Query  301  RYIMQLCRALMRYGAPTHRLEEYMTMTARVLEV-EGQFLYLPGCMIMSFDDPVTRTAEVK  359
             + ++  R L+  GA T+R+E+ M   AR L + E +    P  +I+SFDD       V+
Sbjct  1    DFALRAGRILLESGAETYRVEDTMNRIARALGIDECEVFVTPTGIIISFDDDDESITTVR  60

Query  360  LVRSTQGVDLGRLAETHNVYKNVVHDLIGVEEAIQELDEIMKRKPRFNKWILVPVYGLAG  419
             VRS  G++L +L+E + + + +VH  I +EEA + LDEI +  PR+ +W++V   GLA 
Sbjct  61   RVRSR-GINLEKLSEVNELSRRIVHGEISLEEAEKRLDEIERSPPRYPRWLVVLAAGLAS  119

Query  420  AAVGPFAFDARPIDMPIIFILGSLVGLMQHVISPRSTLYSNVFEVTAAVLTSFLARAFGS  479
            AA     F    ID  + F+ G L GL++ V+  R  L S  FE  AA + S LA    S
Sbjct  120  AAFALL-FGGDWIDFLVAFLAGGLGGLLRLVL-NRRGLNSFFFEAVAAFVASLLALLAVS  177

Query  480  IRITVDGQKQFLFCFSALAQSSIALILPGFMVLCSSLELQSHQMIAGSIRMVFAIIYSLF  539
            + + ++          A+   SI L++PG  +  +  +L +  +++G  R+V AI+ +L 
Sbjct  178  LGLGIN--------PDAIIIGSIMLLVPGLPLTNAVRDLIAGDLVSGLARLVEAILIALA  229

Query  540  LGYGITVGTTVY  551
            + +GI +   + 
Sbjct  230  IAFGIALALALL  241


>CDD:432807 pfam12821, ThrE_2, Threonine/Serine exporter, ThrE.  ThrE_2 is 
a family of membrane proteins involved in the export of threonine 
and serine. L-threonine, L-serine are both substrates 
for the exporter. The exporter exhibits nine-ten predicted 
transmembrane-spanning helices with long charged C and N termini 
and an amphipathic helix present within the N-terminus. 
L-Threonine can be made by the amino acid-producing bacterium 
Corynebacterium glutamicum, but the potential for amino 
acid formation can be considerably improved by reducing its 
intracellular degradation into glycine and increasing its export 
by this exporter. Members of the family are found in Bacteria, 
Archaea, and the fungal kingdoms, and the family can 
exist either as a single long polypeptide chain or as two short 
polypeptides. All family members show an extended hydrophilic 
N-terminal domain with weak sequence similarity to portions 
of hydrolases (proteases, peptidases, and glycosidases); 
this suggests that since this region is cytoplasmic to the 
membrane it may be generating the transport substrate, so 
may imply that threonine may not be the primary substrate and 
the ThrE has a subsidiary function.
Length=129

 Score = 62.2 bits (152),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 28/150 (19%), Positives = 53/150 (35%), Gaps = 21/150 (14%)

Query  577  HFIFVPIFVICLAVINQAKWKQVPVMIFIATCGYITNYFSTTKLGSRSEVANTVGAFTLG  636
              IF  I  +   ++     + +         G++         GS   +A+ + A  +G
Sbjct  1    QLIFAFIATLGFGILFNVPKRALFYAGIGGAVGWLVYLLLMH-FGSSIALASFLAALAIG  59

Query  637  TLGNLYSRLWHGHAATAILPGIFVLVPSGLASSGSLIAGINYANQVRENLHKSGNGTDTS  696
             L  +++R         ++PGI  LVP G A +            V+ N   +       
Sbjct  60   LLSEIFARRLKAPVTVFLVPGIIPLVPGGGAYNTMY-------YLVQGNYALA-------  105

Query  697  SQDTSIASLGFGMIQVAIGITVGLFIAALV  726
                   S G   + +A  I +GL + +L+
Sbjct  106  ------VSYGLETLFIAGAIALGLVLVSLI  129



Lambda      K        H        a         alpha
   0.319    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00020981

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter. T...  250     2e-78
CDD:432807 pfam12821, ThrE_2, Threonine/Serine exporter, ThrE. Th...  62.2    3e-12


>CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter.  ThrE is 
a family of bacterial and Archaeal proteins that catalyze the 
export of L-threonine from the cell. UniProtKB:Q79VD1 has 
been characterized as being necessary for this export. The 
domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent 
efflux of threonine and serine.
Length=241

 Score = 250 bits (640),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 80/252 (32%), Positives = 134/252 (53%), Gaps = 12/252 (5%)

Query  301  RYIMQLCRALMRYGAPTHRLEEYMTMTARVLEV-EGQFLYLPGCMIMSFDDPVTRTAEVK  359
             + ++  R L+  GA T+R+E+ M   AR L + E +    P  +I+SFDD       V+
Sbjct  1    DFALRAGRILLESGAETYRVEDTMNRIARALGIDECEVFVTPTGIIISFDDDDESITTVR  60

Query  360  LVRSTQGVDLGRLAETHNVYKNVVHDLIGVEEAIQELDEIMKRKPRFNKWILVPVYGLAG  419
             VRS  G++L +L+E + + + +VH  I +EEA + LDEI +  PR+ +W++V   GLA 
Sbjct  61   RVRSR-GINLEKLSEVNELSRRIVHGEISLEEAEKRLDEIERSPPRYPRWLVVLAAGLAS  119

Query  420  AAVGPFAFDARPIDMPIIFILGSLVGLMQHVISPRSTLYSNVFEVTAAVLTSFLARAFGS  479
            AA     F    ID  + F+ G L GL++ V+  R  L S  FE  AA + S LA    S
Sbjct  120  AAFALL-FGGDWIDFLVAFLAGGLGGLLRLVL-NRRGLNSFFFEAVAAFVASLLALLAVS  177

Query  480  IRITVDGQKQFLFCFSALAQSSIALILPGFMVLCSSLELQSHQMIAGSIRMVFAIIYSLF  539
            + + ++          A+   SI L++PG  +  +  +L +  +++G  R+V AI+ +L 
Sbjct  178  LGLGIN--------PDAIIIGSIMLLVPGLPLTNAVRDLIAGDLVSGLARLVEAILIALA  229

Query  540  LGYGITVGTTVY  551
            + +GI +   + 
Sbjct  230  IAFGIALALALL  241


>CDD:432807 pfam12821, ThrE_2, Threonine/Serine exporter, ThrE.  ThrE_2 is 
a family of membrane proteins involved in the export of threonine 
and serine. L-threonine, L-serine are both substrates 
for the exporter. The exporter exhibits nine-ten predicted 
transmembrane-spanning helices with long charged C and N termini 
and an amphipathic helix present within the N-terminus. 
L-Threonine can be made by the amino acid-producing bacterium 
Corynebacterium glutamicum, but the potential for amino 
acid formation can be considerably improved by reducing its 
intracellular degradation into glycine and increasing its export 
by this exporter. Members of the family are found in Bacteria, 
Archaea, and the fungal kingdoms, and the family can 
exist either as a single long polypeptide chain or as two short 
polypeptides. All family members show an extended hydrophilic 
N-terminal domain with weak sequence similarity to portions 
of hydrolases (proteases, peptidases, and glycosidases); 
this suggests that since this region is cytoplasmic to the 
membrane it may be generating the transport substrate, so 
may imply that threonine may not be the primary substrate and 
the ThrE has a subsidiary function.
Length=129

 Score = 62.2 bits (152),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 28/150 (19%), Positives = 53/150 (35%), Gaps = 21/150 (14%)

Query  577  HFIFVPIFVICLAVINQAKWKQVPVMIFIATCGYITNYFSTTKLGSRSEVANTVGAFTLG  636
              IF  I  +   ++     + +         G++         GS   +A+ + A  +G
Sbjct  1    QLIFAFIATLGFGILFNVPKRALFYAGIGGAVGWLVYLLLMH-FGSSIALASFLAALAIG  59

Query  637  TLGNLYSRLWHGHAATAILPGIFVLVPSGLASSGSLIAGINYANQVRENLHKSGNGTDTS  696
             L  +++R         ++PGI  LVP G A +            V+ N   +       
Sbjct  60   LLSEIFARRLKAPVTVFLVPGIIPLVPGGGAYNTMY-------YLVQGNYALA-------  105

Query  697  SQDTSIASLGFGMIQVAIGITVGLFIAALV  726
                   S G   + +A  I +GL + +L+
Sbjct  106  ------VSYGLETLFIAGAIALGLVLVSLI  129



Lambda      K        H        a         alpha
   0.319    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00020979

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter. T...  250     2e-78
CDD:432807 pfam12821, ThrE_2, Threonine/Serine exporter, ThrE. Th...  62.2    3e-12


>CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter.  ThrE is 
a family of bacterial and Archaeal proteins that catalyze the 
export of L-threonine from the cell. UniProtKB:Q79VD1 has 
been characterized as being necessary for this export. The 
domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent 
efflux of threonine and serine.
Length=241

 Score = 250 bits (640),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 80/252 (32%), Positives = 134/252 (53%), Gaps = 12/252 (5%)

Query  301  RYIMQLCRALMRYGAPTHRLEEYMTMTARVLEV-EGQFLYLPGCMIMSFDDPVTRTAEVK  359
             + ++  R L+  GA T+R+E+ M   AR L + E +    P  +I+SFDD       V+
Sbjct  1    DFALRAGRILLESGAETYRVEDTMNRIARALGIDECEVFVTPTGIIISFDDDDESITTVR  60

Query  360  LVRSTQGVDLGRLAETHNVYKNVVHDLIGVEEAIQELDEIMKRKPRFNKWILVPVYGLAG  419
             VRS  G++L +L+E + + + +VH  I +EEA + LDEI +  PR+ +W++V   GLA 
Sbjct  61   RVRSR-GINLEKLSEVNELSRRIVHGEISLEEAEKRLDEIERSPPRYPRWLVVLAAGLAS  119

Query  420  AAVGPFAFDARPIDMPIIFILGSLVGLMQHVISPRSTLYSNVFEVTAAVLTSFLARAFGS  479
            AA     F    ID  + F+ G L GL++ V+  R  L S  FE  AA + S LA    S
Sbjct  120  AAFALL-FGGDWIDFLVAFLAGGLGGLLRLVL-NRRGLNSFFFEAVAAFVASLLALLAVS  177

Query  480  IRITVDGQKQFLFCFSALAQSSIALILPGFMVLCSSLELQSHQMIAGSIRMVFAIIYSLF  539
            + + ++          A+   SI L++PG  +  +  +L +  +++G  R+V AI+ +L 
Sbjct  178  LGLGIN--------PDAIIIGSIMLLVPGLPLTNAVRDLIAGDLVSGLARLVEAILIALA  229

Query  540  LGYGITVGTTVY  551
            + +GI +   + 
Sbjct  230  IAFGIALALALL  241


>CDD:432807 pfam12821, ThrE_2, Threonine/Serine exporter, ThrE.  ThrE_2 is 
a family of membrane proteins involved in the export of threonine 
and serine. L-threonine, L-serine are both substrates 
for the exporter. The exporter exhibits nine-ten predicted 
transmembrane-spanning helices with long charged C and N termini 
and an amphipathic helix present within the N-terminus. 
L-Threonine can be made by the amino acid-producing bacterium 
Corynebacterium glutamicum, but the potential for amino 
acid formation can be considerably improved by reducing its 
intracellular degradation into glycine and increasing its export 
by this exporter. Members of the family are found in Bacteria, 
Archaea, and the fungal kingdoms, and the family can 
exist either as a single long polypeptide chain or as two short 
polypeptides. All family members show an extended hydrophilic 
N-terminal domain with weak sequence similarity to portions 
of hydrolases (proteases, peptidases, and glycosidases); 
this suggests that since this region is cytoplasmic to the 
membrane it may be generating the transport substrate, so 
may imply that threonine may not be the primary substrate and 
the ThrE has a subsidiary function.
Length=129

 Score = 62.2 bits (152),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 28/150 (19%), Positives = 53/150 (35%), Gaps = 21/150 (14%)

Query  577  HFIFVPIFVICLAVINQAKWKQVPVMIFIATCGYITNYFSTTKLGSRSEVANTVGAFTLG  636
              IF  I  +   ++     + +         G++         GS   +A+ + A  +G
Sbjct  1    QLIFAFIATLGFGILFNVPKRALFYAGIGGAVGWLVYLLLMH-FGSSIALASFLAALAIG  59

Query  637  TLGNLYSRLWHGHAATAILPGIFVLVPSGLASSGSLIAGINYANQVRENLHKSGNGTDTS  696
             L  +++R         ++PGI  LVP G A +            V+ N   +       
Sbjct  60   LLSEIFARRLKAPVTVFLVPGIIPLVPGGGAYNTMY-------YLVQGNYALA-------  105

Query  697  SQDTSIASLGFGMIQVAIGITVGLFIAALV  726
                   S G   + +A  I +GL + +L+
Sbjct  106  ------VSYGLETLFIAGAIALGLVLVSLI  129



Lambda      K        H        a         alpha
   0.319    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00020982

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter. T...  250     2e-78
CDD:432807 pfam12821, ThrE_2, Threonine/Serine exporter, ThrE. Th...  62.2    3e-12


>CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter.  ThrE is 
a family of bacterial and Archaeal proteins that catalyze the 
export of L-threonine from the cell. UniProtKB:Q79VD1 has 
been characterized as being necessary for this export. The 
domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent 
efflux of threonine and serine.
Length=241

 Score = 250 bits (640),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 80/252 (32%), Positives = 134/252 (53%), Gaps = 12/252 (5%)

Query  301  RYIMQLCRALMRYGAPTHRLEEYMTMTARVLEV-EGQFLYLPGCMIMSFDDPVTRTAEVK  359
             + ++  R L+  GA T+R+E+ M   AR L + E +    P  +I+SFDD       V+
Sbjct  1    DFALRAGRILLESGAETYRVEDTMNRIARALGIDECEVFVTPTGIIISFDDDDESITTVR  60

Query  360  LVRSTQGVDLGRLAETHNVYKNVVHDLIGVEEAIQELDEIMKRKPRFNKWILVPVYGLAG  419
             VRS  G++L +L+E + + + +VH  I +EEA + LDEI +  PR+ +W++V   GLA 
Sbjct  61   RVRSR-GINLEKLSEVNELSRRIVHGEISLEEAEKRLDEIERSPPRYPRWLVVLAAGLAS  119

Query  420  AAVGPFAFDARPIDMPIIFILGSLVGLMQHVISPRSTLYSNVFEVTAAVLTSFLARAFGS  479
            AA     F    ID  + F+ G L GL++ V+  R  L S  FE  AA + S LA    S
Sbjct  120  AAFALL-FGGDWIDFLVAFLAGGLGGLLRLVL-NRRGLNSFFFEAVAAFVASLLALLAVS  177

Query  480  IRITVDGQKQFLFCFSALAQSSIALILPGFMVLCSSLELQSHQMIAGSIRMVFAIIYSLF  539
            + + ++          A+   SI L++PG  +  +  +L +  +++G  R+V AI+ +L 
Sbjct  178  LGLGIN--------PDAIIIGSIMLLVPGLPLTNAVRDLIAGDLVSGLARLVEAILIALA  229

Query  540  LGYGITVGTTVY  551
            + +GI +   + 
Sbjct  230  IAFGIALALALL  241


>CDD:432807 pfam12821, ThrE_2, Threonine/Serine exporter, ThrE.  ThrE_2 is 
a family of membrane proteins involved in the export of threonine 
and serine. L-threonine, L-serine are both substrates 
for the exporter. The exporter exhibits nine-ten predicted 
transmembrane-spanning helices with long charged C and N termini 
and an amphipathic helix present within the N-terminus. 
L-Threonine can be made by the amino acid-producing bacterium 
Corynebacterium glutamicum, but the potential for amino 
acid formation can be considerably improved by reducing its 
intracellular degradation into glycine and increasing its export 
by this exporter. Members of the family are found in Bacteria, 
Archaea, and the fungal kingdoms, and the family can 
exist either as a single long polypeptide chain or as two short 
polypeptides. All family members show an extended hydrophilic 
N-terminal domain with weak sequence similarity to portions 
of hydrolases (proteases, peptidases, and glycosidases); 
this suggests that since this region is cytoplasmic to the 
membrane it may be generating the transport substrate, so 
may imply that threonine may not be the primary substrate and 
the ThrE has a subsidiary function.
Length=129

 Score = 62.2 bits (152),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 28/150 (19%), Positives = 53/150 (35%), Gaps = 21/150 (14%)

Query  577  HFIFVPIFVICLAVINQAKWKQVPVMIFIATCGYITNYFSTTKLGSRSEVANTVGAFTLG  636
              IF  I  +   ++     + +         G++         GS   +A+ + A  +G
Sbjct  1    QLIFAFIATLGFGILFNVPKRALFYAGIGGAVGWLVYLLLMH-FGSSIALASFLAALAIG  59

Query  637  TLGNLYSRLWHGHAATAILPGIFVLVPSGLASSGSLIAGINYANQVRENLHKSGNGTDTS  696
             L  +++R         ++PGI  LVP G A +            V+ N   +       
Sbjct  60   LLSEIFARRLKAPVTVFLVPGIIPLVPGGGAYNTMY-------YLVQGNYALA-------  105

Query  697  SQDTSIASLGFGMIQVAIGITVGLFIAALV  726
                   S G   + +A  I +GL + +L+
Sbjct  106  ------VSYGLETLFIAGAIALGLVLVSLI  129



Lambda      K        H        a         alpha
   0.319    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00020983

Length=246


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00026344

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00020984

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00026345

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00026346

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            89.0    5e-20
CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TR...  80.5    1e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 89.0 bits (221),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 73/340 (21%), Positives = 120/340 (35%), Gaps = 61/340 (18%)

Query  1    MTSIVLFEVGSALCGAAPNSIGFILGRAIAGLGSGGIFAGALTVIVYALPLHKRPKYQGA  60
            +  ++LF +G  L   A +    ++ R + GLG+G +F  AL +I    P  +R +  G 
Sbjct  66   LIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGL  125

Query  61   FGAVFGVASVAGPLVGGAFTTNVTWRWCFYINLPLGAVVIATTLLFFEIPDHQNAPKPLK  120
              A FG+ +  GPL+GG   +   WR  F I   L  +     LL    P  ++      
Sbjct  126  VSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAV--LLLLPRPPPESKRPKPA  183

Query  121  GKLRQLNGLGVLTIMPGVVCLCLALQWGGSQYAWGEGRIVALLVLTFLCLIAFVLIQVWK  180
             + R    +                                                   
Sbjct  184  EEARLSLIVAW-------------------------------------------------  194

Query  181  PEQATLPPRVFLQRSIASGFWASCCFGAHMIPTVIYLPLWFQVIDGVSAVDSGIRLLPML  240
                    +  L+  +     A   FG      + YLPL+ +V+ G+SA+ +G+ L    
Sbjct  195  --------KALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVL-GLSALLAGLLLGLGG  245

Query  241  LSLVVASILTGGLVSRIGYYTPFLMLGIVLSSIGAGLLTTLGVHTSSAKWIGFQVLYGFG  300
            L   +  +L G L  R+G     L+  ++L     GLL      +S    +   +L GFG
Sbjct  246  LLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-LLLGFG  304

Query  301  LGTCNQIPNMAAQTVLPREQVAIGASLMFFAQQLFGAVFT  340
             G      N     + P+E+    + L   A  L GA+  
Sbjct  305  FGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344


>CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12).  
This family consists of several fungal specific trichothecene 
efflux pump proteins. Many of the genes involved in trichothecene 
toxin biosynthesis in Fusarium sporotrichioides are 
present within a gene cluster.It has been suggested that TRI12 
may play a role in F. sporotrichioides self-protection against 
trichothecenes.
Length=598

 Score = 80.5 bits (198),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 87/378 (23%), Positives = 145/378 (38%), Gaps = 61/378 (16%)

Query  24   ILGRAIAGLGSGGIFAGALTVIVYALPLHKRPKYQGAF--GAVFGVASVAGPLVGGAFTT  81
            +LG A    G+  +F G L        +  + K+ G     A     + AGP  G     
Sbjct  140  LLGVAAGPAGASPLFIGEL--------MSNKTKFLGLLIVSAPTIAMNGAGPYFGQRLAI  191

Query  82   NVTWRWCFYINLPLGAVVIATTLLFFEIPDHQNAPKPLKGK-------LRQLNGLGVLTI  134
               WRW FYI + + A+ +   ++++  P        L GK       L +L+ +G+  +
Sbjct  192  QGNWRWIFYIYIIMSAIAVLLIIIWYHPPSFAQ----LHGKKARKRDELAKLDWIGIFLV  247

Query  135  MPGVVCLCLALQWGGS-QYAWGEGRIVALLVLTFLCLIAFVLIQVW-KPEQATLPPRVFL  192
            + G     L + WGG     W   +I+ L+      L+ F L +V+ KPEQ  +PP +F 
Sbjct  248  IAGTSLFLLGVSWGGKPNNPWNSAKIIGLISSGAGSLVIFALYEVFGKPEQPIIPPALFK  307

Query  193  Q-RSIASGFWASCCFGAHMIPTVIYLPLWFQVIDGVS----------------AVDSGIR  235
              R        S   GA  +   I  P     I G S                   +G+ 
Sbjct  308  DTRGFVCILIISSIMGAMHLCLTIIYPQQVINIFGSSLKNWEETAWMSATASFGTGAGVM  367

Query  236  LLPMLLSLVVA---SILTGGLVSRIGYYTPFLMLGIVLSSIGAGLLTTLGVHTSSAKWIG  292
            +L  L  L+      IL G L     + T FL           G ++++     +A  I 
Sbjct  368  ILGNLFHLIRHIRWQILVGAL-----WLTAFL-----------GAMSSINRDNKNAA-IA  410

Query  293  FQVLYGFGLGTCNQIPNMAAQTVLPREQVAIGASLMFFAQQLFGAVFTSVGENVLSNQLA  352
                 GF +     I  +  Q +   E + +  +++  A+   G++FT+   ++ SNQ  
Sbjct  411  LSFFSGFVVAWAQDITMLLVQFITTDEDLGVAFAVVAAARPFAGSIFTAAFISLYSNQYP  470

Query  353  KRLAIS-SQTVQNTGATQ  369
            K +A   S  ++ T   Q
Sbjct  471  KEIASHLSSALRGTDFPQ  488



Lambda      K        H        a         alpha
   0.324    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00020985

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00020986

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            100     2e-25


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 100 bits (252),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 58/233 (25%), Positives = 103/233 (44%), Gaps = 2/233 (1%)

Query  33   IFIGMFLVSLDRLIISPAIPQ-ITDEFH-SAGDIGWYGTAYLLTNCAFQLLFGKVYTVFS  90
            +F+  FL +L R ++ PA+P  + ++   S  +IG   T + L     Q L G++   F 
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  91   IKATFMTSIVLFEVGSALCGAAPNSIGFILGRAIAGLGSGGIFAGALTVIVYALPLHKRP  150
             +   +  ++LF +G  L   A +    ++ R + GLG+G +F  AL +I    P  +R 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  151  KYQGAFGAVFGVASVAGPLVGGAFTTNVTWRWCFYINLPLGAVVIATTLLFFEIPDHQNA  210
            +  G   A FG+ +  GPL+GG   +   WR  F I   L  +     LL    P+ +  
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRP  180

Query  211  PKPLKGKLRQLNGLGVLTIMPGVVCLCLALQWGGSQYAVRSHSSLALFTTGID  263
                + +L  +     L   P +  L   L +G + + + ++  L     G+ 
Sbjct  181  KPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLS  233



Lambda      K        H        a         alpha
   0.326    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00020987

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            65.9    3e-13
CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TR...  66.6    3e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 65.9 bits (161),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 0/153 (0%)

Query  1    MTSIVLFEVGSALCGAAPNSIGFILGRAIAGLGSGGIFAGALTVIVYALPLHKRPKYQGA  60
            +  ++LF +G  L   A +    ++ R + GLG+G +F  AL +I    P  +R +  G 
Sbjct  66   LIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGL  125

Query  61   FGAVFGVASVAGPLVGGAFTTNVTWRWCFYINLPLGAVVIATTLLFFEIPDHQNAPKPLK  120
              A FG+ +  GPL+GG   +   WR  F I   L  +     LL    P+ +      +
Sbjct  126  VSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEE  185

Query  121  GKLRQLNGLGVLTIMPGVVCLCLALQWGGSQYA  153
             +L  +     L   P +  L   L +G + + 
Sbjct  186  ARLSLIVAWKALLRDPVLWLLLALLLFGFAFFG  218


>CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12).  
This family consists of several fungal specific trichothecene 
efflux pump proteins. Many of the genes involved in trichothecene 
toxin biosynthesis in Fusarium sporotrichioides are 
present within a gene cluster.It has been suggested that TRI12 
may play a role in F. sporotrichioides self-protection against 
trichothecenes.
Length=598

 Score = 66.6 bits (162),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 23/179 (13%)

Query  24   ILGRAIAGLGSGGIFAGALTVIVYALPLHKRPKYQGAF--GAVFGVASVAGPLVGGAFTT  81
            +LG A    G+  +F G L        +  + K+ G     A     + AGP  G     
Sbjct  140  LLGVAAGPAGASPLFIGEL--------MSNKTKFLGLLIVSAPTIAMNGAGPYFGQRLAI  191

Query  82   NVTWRWCFYINLPLGAVVIATTLLFFEIPDHQNAPKPLKGK-------LRQLNGLGVLTI  134
               WRW FYI + + A+ +   ++++  P        L GK       L +L+ +G+  +
Sbjct  192  QGNWRWIFYIYIIMSAIAVLLIIIWYHPPSFAQ----LHGKKARKRDELAKLDWIGIFLV  247

Query  135  MPGVVCLCLALQWGGS-QYAWGEGRIVALLVLTFLCLIAFVLIQVW-KPEQATLPPRVF  191
            + G     L + WGG     W   +I+ L+      L+ F L +V+ KPEQ  +PP +F
Sbjct  248  IAGTSLFLLGVSWGGKPNNPWNSAKIIGLISSGAGSLVIFALYEVFGKPEQPIIPPALF  306



Lambda      K        H        a         alpha
   0.328    0.144    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00020988

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            120     1e-30
CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TR...  87.0    1e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 120 bits (303),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 90/405 (22%), Positives = 151/405 (37%), Gaps = 63/405 (16%)

Query  33   IFIGMFLVSLDRLIISPAIPQ-ITDEFH-SAGDIGWYGTAYLLTNCAFQLLFGKVYTVFS  90
            +F+  FL +L R ++ PA+P  + ++   S  +IG   T + L     Q L G++   F 
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  91   IKATFMTSIVLFEVGSALCGAAPNSIGFILGRAIAGLGSGGIFAGALTVIVYALPLHKRP  150
             +   +  ++LF +G  L   A +    ++ R + GLG+G +F  AL +I    P  +R 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  151  KYQGAFGAVFGVASVAGPLVGGAFTTNVTWRWCFYINLPLGAVVIATTLLFFEIPDHQNA  210
            +  G   A FG+ +  GPL+GG   +   WR  F I   L  +     LL    P  ++ 
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAV--LLLLPRPPPESK  178

Query  211  PKPLKGKLRQLNGLGVLTIMPGVVCLCLALQWGGSQYAWGEGRIVALLVLTFLCLIAFVL  270
                  + R    +                                              
Sbjct  179  RPKPAEEARLSLIVAW--------------------------------------------  194

Query  271  IQVWKPEQATLPPRVFLQRSIASGFWASCCFGAHMIPTVIYLPLWFQVIDGVSAVDSGIR  330
                         +  L+  +     A   FG      + YLPL+ +V+ G+SA+ +G+ 
Sbjct  195  -------------KALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVL-GLSALLAGLL  240

Query  331  LLPMLLSLVVASILTGGLVSRIGYYTPFLMLGIVLSSIGAGLLTTLGVHTSSAKWIGFQV  390
            L    L   +  +L G L  R+G     L+  ++L     GLL      +S    +   +
Sbjct  241  LGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-L  299

Query  391  LYGFGLGTCNQIPNMAAQTVLPREQVAIGASLMFFAQQLFGAVFT  435
            L GFG G      N     + P+E+    + L   A  L GA+  
Sbjct  300  LLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344


>CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12).  
This family consists of several fungal specific trichothecene 
efflux pump proteins. Many of the genes involved in trichothecene 
toxin biosynthesis in Fusarium sporotrichioides are 
present within a gene cluster.It has been suggested that TRI12 
may play a role in F. sporotrichioides self-protection against 
trichothecenes.
Length=598

 Score = 87.0 bits (215),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 105/450 (23%), Positives = 183/450 (41%), Gaps = 58/450 (13%)

Query  48   SPAIPQITDEFHSAGDIGWYGTAYLLTNCAFQLLFGKVYTVFSIKATFMTSIVLFEVGSA  107
            + A+P I  +   + + G + T + +      L+ G++   F  +   + + ++  VG A
Sbjct  64   ASALPNILQDIGQSENQGLFSTLWTMGQAVSILMMGRLTDRFGRRPFVIATHIIGLVG-A  122

Query  108  LCGAAPNSIGFILGRAIAGLGSGGIFAGALTVIVYALPLHKRPKYQGAF--GAVFGVASV  165
            + G   N    +L  A+  LG     AGA  + +  L +  + K+ G     A     + 
Sbjct  123  IVGCTANKFNTLLA-AMTLLGVAAGPAGASPLFIGEL-MSNKTKFLGLLIVSAPTIAMNG  180

Query  166  AGPLVGGAFTTNVTWRWCFYINLPLGAVVIATTLLFFEIPDHQNAPKPLKGK-------L  218
            AGP  G        WRW FYI + + A+ +   ++++  P        L GK       L
Sbjct  181  AGPYFGQRLAIQGNWRWIFYIYIIMSAIAVLLIIIWYHPPSFAQ----LHGKKARKRDEL  236

Query  219  RQLNGLGVLTIMPGVVCLCLALQWGGS-QYAWGEGRIVALLVLTFLCLIAFVLIQVW-KP  276
             +L+ +G+  ++ G     L + WGG     W   +I+ L+      L+ F L +V+ KP
Sbjct  237  AKLDWIGIFLVIAGTSLFLLGVSWGGKPNNPWNSAKIIGLISSGAGSLVIFALYEVFGKP  296

Query  277  EQATLPPRVFLQ-RSIASGFWASCCFGA-HMIPTVIY-----------LPLWFQVIDGVS  323
            EQ  +PP +F   R        S   GA H+  T+IY           L  W +    +S
Sbjct  297  EQPIIPPALFKDTRGFVCILIISSIMGAMHLCLTIIYPQQVINIFGSSLKNW-EETAWMS  355

Query  324  AVDS-----GIRLLPMLLSLVVA---SILTGGLVSRIGYYTPFLMLGIVLSSIGAGLLTT  375
            A  S     G+ +L  L  L+      IL G L     + T FL           G +++
Sbjct  356  ATASFGTGAGVMILGNLFHLIRHIRWQILVGAL-----WLTAFL-----------GAMSS  399

Query  376  LGVHTSSAKWIGFQVLYGFGLGTCNQIPNMAAQTVLPREQVAIGASLMFFAQQLFGAVFT  435
            +     +A  I      GF +     I  +  Q +   E + +  +++  A+   G++FT
Sbjct  400  INRDNKNAA-IALSFFSGFVVAWAQDITMLLVQFITTDEDLGVAFAVVAAARPFAGSIFT  458

Query  436  SVGENVLSNQLAKRLAIS-SQTVQNTGATQ  464
            +   ++ SNQ  K +A   S  ++ T   Q
Sbjct  459  AAFISLYSNQYPKEIASHLSSALRGTDFPQ  488



Lambda      K        H        a         alpha
   0.324    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690414096


Query= TCONS_00026347

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00020989

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family. Th...  236     2e-74


>CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family.  This family 
includes both bacterial phospholipase C enzymes EC:3.1.4.3, 
but also eukaryotic acid phosphatases EC:3.1.3.2.
Length=348

 Score = 236 bits (605),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 128/395 (32%), Positives = 181/395 (46%), Gaps = 75/395 (19%)

Query  90   IKNVVVLVQENLSFDNYAGGLTYSPSIDGLVNRT-----------YCNPANISDPHSPMV  138
            IK+VV+++QEN SFD+Y G L     + G  + +             NPA +S P+    
Sbjct  1    IKHVVIIMQENRSFDHYFGTL---SGVRGFDDPSPLFQQDGVTKQALNPAGVSAPYRLDT  57

Query  139  CAQPTAKNIAPDDPDHSITGGNQQVYSTYHPDSDFDAPNMQGFVAEQIAAYGIDGNLSRA  198
               P +  +   DP HS    ++Q          ++   M GFVA              +
Sbjct  58   TFGPASGYV-VPDPGHSWQAIHEQ----------WNGGRMDGFVAAA-----------GS  95

Query  199  GEVINYYTPEHIPVFNAMAENFVLFDRWFAAVPGPTNPNRAYLTSGTSHG--HGTNDPDF  256
             +V+ Y+  + IP    +A+ F L DR+F +VPGPT PNR YL SGTS    HG      
Sbjct  96   TQVMGYFDRQDIPFLWLLAQEFTLCDRYFCSVPGPTQPNRLYLVSGTSDPGSHGGPSLVD  155

Query  257  DRSAL----PQRSIFEQLSEHNISWINYSN--TTGFLPDALFYRWTA------VSGLGET  304
              +      P  +I ++LS+  ISW  Y             +Y             L + 
Sbjct  156  PNTTPVKGFPWPTIPDRLSQAGISWGIYQEAFLDNHHQPFNYYVRKHNPLPSFRDALHQY  215

Query  305  NVRP--IDQFYRDAKAGTLPQFTWINPECCSYMSFHPPSPINMGEGWIKSVYEALRSSPQ  362
             + P     F +D K G LPQ +W+ P   +    HP   I  G+ WIK+V EAL SSPQ
Sbjct  216  GLAPHYFSDFKKDVKNGKLPQVSWVIPNGANDE--HPGHDIAAGQKWIKNVLEALLSSPQ  273

Query  363  WHETLFILTFDEHGGFADHVPPPENVPAGDDLTYTETARDGKPSTFAFDRLGIRVPTVLM  422
            W++TL I+T+DE+GGF DHVPPP+    G    Y                LG RVPT+++
Sbjct  274  WNKTLLIVTYDENGGFYDHVPPPKAPVPGIPGPY---------------GLGNRVPTLVI  318

Query  423  SPWVGKGVVQNRPADGNGEFTHTSILKFVADLWGL  457
            SPW   G V +        F HTS+L+F+   +GL
Sbjct  319  SPWAKPGTVDHTT------FDHTSVLRFIEKRFGL  347



Lambda      K        H        a         alpha
   0.318    0.135    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00020990

Length=451
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            80.5    3e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 80.5 bits (199),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 65/276 (24%), Positives = 113/276 (41%), Gaps = 10/276 (4%)

Query  123  RRWFSTAGFVIMCLALGLSSFSTSVTHLIMSQGVAYGIGGCLAYTPSILFLSDWF-VEKK  181
            RR     G ++  L L L  F++S+  L++   V  G+G    +  ++  ++DWF  E++
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVL-RVLQGLGAGALFPAALALIADWFPPEER  119

Query  182  GLAFGIVWSGSGLTGIIFPLILQTLLNQYGWQTTLRACSIALFLLAAPFMTFHKPRVPIR  241
            G A G+V +G GL   + PL+   L + +GW+      +I   L A   +    P    R
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKR  179

Query  242  HSHLRQ------LSLRFLWDKVYLIYQLGNTMQAIGFWIPSIFLTSYARTLGASDFLASL  295
                 +      ++ + L     L   L   +    F+    +L  Y   LG S  LA L
Sbjct  180  PKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGL  239

Query  296  TVTLFNLMTVFGCIFTGYLADRHHVTKCILLSSAGAVASV--FLLWGLANHIATLYAFCI  353
             + L  L+   G +  G L+DR    + +LL+    + +    LL  L      L    +
Sbjct  240  LLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALL  299

Query  354  VYGFFAGGYSSSWSALSHEVQKSERSAHVSMVFAFL  389
            + GF  G    + +AL  ++   E     S ++   
Sbjct  300  LLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTA  335



Lambda      K        H        a         alpha
   0.327    0.140    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 553667144


Query= TCONS_00020992

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00020993

Length=310


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 355153814


Query= TCONS_00020994

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00026348

Length=276


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00026349

Length=276


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00026350

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00026351

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00020995

Length=257


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00020996

Length=284


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00026352

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00020997

Length=324


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00020998

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00020999

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00026353

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00021000

Length=820
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369159 pfam06985, HET, Heterokaryon incompatibility protein (...  102     5e-26
CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               67.1    3e-14


>CDD:369159 pfam06985, HET, Heterokaryon incompatibility protein (HET).  
This family represents a conserved region approximately 150 
residues long within various heterokaryon incompatibility proteins 
that seem to be restricted to ascomycete fungi. Genetic 
differences in specific het genes prevent a viable heterokaryotic 
fungal cell from being formed by the fusion of filaments 
from two different wild-type strains. Many family members 
also contain the pfam00400 repeat and the pfam05729 domain.
Length=146

 Score = 102 bits (256),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 16/115 (14%)

Query  232  ERWCWIDQICINQDDIAERGAQVAIMDQIYKNAAFTHVWLGPEDA-YTDTAIKTIEKLDT  290
             R+ WID +CINQDD  E+  QV +M  IY NAA   V LG EDA     A++++ +L  
Sbjct  47   YRYLWIDALCINQDDDKEKNQQVQLMGDIYSNAALVIVALGGEDADSGLPAVRSLRRLA-  105

Query  291  AAGDFIQSKEIHPYREQPEEIYAAARIPHVSMEEWTSLAALFQRPYFRRLWIIQE  345
                          +         +    + +  W +L  L + P+F R W +QE
Sbjct  106  --------------QLSVRVDDRISSDLSLLLRSWRALEDLLESPWFTRGWTLQE  146


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 67.1 bits (164),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 48/82 (59%), Gaps = 2/82 (2%)

Query  130  LHWASIAGKEDLIEPLLCSGVDVNVRDEWGVTPLSYAAQVGSREGVELLLSAGADAGIVD  189
            LH A+  G  +L++ LL +G D N++D+ G T L  AA+ G  E V+LLL   AD  + D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVNLKD  59

Query  190  NRGNTPLDYARQGNYQGIIQSL  211
            N G T L YA +  +  I++ L
Sbjct  60   N-GRTALHYAARSGHLEIVKLL  80


 Score = 58.6 bits (142),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 29/73 (40%), Positives = 42/73 (58%), Gaps = 2/73 (3%)

Query  117  CNRGDRRKLLRTSLHWASIAGKEDLIEPLLCSGVDVNVRDEWGVTPLSYAAQVGSREGVE  176
             +   + K  RT+LH A+  G  ++++ LL    DVN++D  G T L YAA+ G  E V+
Sbjct  21   ADANLQDKNGRTALHLAAKNGHLEIVK-LLLEHADVNLKDN-GRTALHYAARSGHLEIVK  78

Query  177  LLLSAGADAGIVD  189
            LLL  GAD  + D
Sbjct  79   LLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.319    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1040747650


Query= TCONS_00021001

Length=509


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 632879588


Query= TCONS_00026354

Length=505


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0914    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00026355

Length=220


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00021002

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00026356

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462771 pfam09362, DUF1996, Domain of unknown function (DUF199...  365     1e-126
CDD:460348 pfam01822, WSC, WSC domain. This domain may be involve...  96.8    3e-25 


>CDD:462771 pfam09362, DUF1996, Domain of unknown function (DUF1996).  This 
family of proteins are functionally uncharacterized.
Length=234

 Score = 365 bits (940),  Expect = 1e-126, Method: Composition-based stats.
 Identities = 121/239 (51%), Positives = 153/239 (64%), Gaps = 12/239 (5%)

Query  36   DPIVQPGVAASHAHTIMGGSGFGFTMDYNQTQESKCSSCSPIADKSNYWIPTLYYQAENG  95
            DPIV PG  +SH H I+GG+ F  TM Y+  Q+S C+SCS   DKSNYW PTLY++A NG
Sbjct  1    DPIVNPGQVSSHVHQIVGGNAFNATMTYDSLQDSTCTSCSVAEDKSNYWTPTLYFKARNG  60

Query  96   SFTPVE---QNGGALIYYLSRQRPDPKNKTVLAPPKDLRMVAGNPMDRKFKGTHEAEARS  152
            +F  V    QNGG  +YYL R         V A P   RM+AG+P  R+        A S
Sbjct  61   TFERVPQMRQNGGMTVYYLLRGGG---GDNVTAFPPGFRMIAGDPTLRQA--ALAQRAIS  115

Query  153  YACLDYNGP--AKPETNGFPNYNCPNGLRSQVFFPSCWNGVDYDSPDHKSHMAYPIDS--  208
            + CL+Y GP     +T+GFP+ NCP+GLR+++ FPSCW+G + DSPDHKSH+AYP     
Sbjct  116  FRCLNYGGPPEGSLDTHGFPDKNCPDGLRAEIHFPSCWDGKNLDSPDHKSHVAYPFSLVD  175

Query  209  YNSGACPESHPIKIVSIFIEVIWKTEAFADMWYGDSQPFVWSNGDKTGYGLHADFVNGW  267
             + G CP SHP+++  +F E+IW T AF D     SQPFV SNGD TGYG H DF+NGW
Sbjct  176  ESGGPCPASHPVRLPQLFYEIIWDTRAFNDGPEDGSQPFVLSNGDPTGYGYHGDFINGW  234


>CDD:460348 pfam01822, WSC, WSC domain.  This domain may be involved in carbohydrate 
binding.
Length=82

 Score = 96.8 bits (241),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 46/84 (55%), Gaps = 2/84 (2%)

Query  362  WIGCARDYINFEHILAESSSSSDDMTVQKCIQTCKKGGYTYAGVEYSRECYCGNSIAPEK  421
            ++GC  D      +L  SS   DDMT +KCI  C   GYTYAG+EY  ECYCGNS+    
Sbjct  1    YLGCYSDGTGGRRLLLGSSGDYDDMTPEKCIAFCSAAGYTYAGLEYGGECYCGNSLPSGS  60

Query  422  MPSVSPMGKCLHPCSGDPSQNCGG  445
                +    C  PC GD SQ CGG
Sbjct  61   AL--ADSSDCNTPCPGDSSQTCGG  82



Lambda      K        H        a         alpha
   0.317    0.136    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581273816


Query= TCONS_00021003

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462771 pfam09362, DUF1996, Domain of unknown function (DUF199...  365     1e-126
CDD:460348 pfam01822, WSC, WSC domain. This domain may be involve...  96.8    3e-25 


>CDD:462771 pfam09362, DUF1996, Domain of unknown function (DUF1996).  This 
family of proteins are functionally uncharacterized.
Length=234

 Score = 365 bits (939),  Expect = 1e-126, Method: Composition-based stats.
 Identities = 121/239 (51%), Positives = 153/239 (64%), Gaps = 12/239 (5%)

Query  36   DPIVQPGVAASHAHTIMGGSGFGFTMDYNQTQESKCSSCSPIADKSNYWIPTLYYQAENG  95
            DPIV PG  +SH H I+GG+ F  TM Y+  Q+S C+SCS   DKSNYW PTLY++A NG
Sbjct  1    DPIVNPGQVSSHVHQIVGGNAFNATMTYDSLQDSTCTSCSVAEDKSNYWTPTLYFKARNG  60

Query  96   SFTPVE---QNGGALIYYLSRQRPDPKNKTVLAPPKDLRMVAGNPMDRKFKGTHEAEARS  152
            +F  V    QNGG  +YYL R         V A P   RM+AG+P  R+        A S
Sbjct  61   TFERVPQMRQNGGMTVYYLLRGGG---GDNVTAFPPGFRMIAGDPTLRQA--ALAQRAIS  115

Query  153  YACLDYNGP--AKPETNGFPNYNCPNGLRSQVFFPSCWNGVDYDSPDHKSHMAYPIDS--  208
            + CL+Y GP     +T+GFP+ NCP+GLR+++ FPSCW+G + DSPDHKSH+AYP     
Sbjct  116  FRCLNYGGPPEGSLDTHGFPDKNCPDGLRAEIHFPSCWDGKNLDSPDHKSHVAYPFSLVD  175

Query  209  YNSGACPESHPIKIVSIFIEVIWKTEAFADMWYGDSQPFVWSNGDKTGYGLHADFVNGW  267
             + G CP SHP+++  +F E+IW T AF D     SQPFV SNGD TGYG H DF+NGW
Sbjct  176  ESGGPCPASHPVRLPQLFYEIIWDTRAFNDGPEDGSQPFVLSNGDPTGYGYHGDFINGW  234


>CDD:460348 pfam01822, WSC, WSC domain.  This domain may be involved in carbohydrate 
binding.
Length=82

 Score = 96.8 bits (241),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 46/84 (55%), Gaps = 2/84 (2%)

Query  362  WIGCARDYINFEHILAESSSSSDDMTVQKCIQTCKKGGYTYAGVEYSRECYCGNSIAPEK  421
            ++GC  D      +L  SS   DDMT +KCI  C   GYTYAG+EY  ECYCGNS+    
Sbjct  1    YLGCYSDGTGGRRLLLGSSGDYDDMTPEKCIAFCSAAGYTYAGLEYGGECYCGNSLPSGS  60

Query  422  MPSVSPMGKCLHPCSGDPSQNCGG  445
                +    C  PC GD SQ CGG
Sbjct  61   AL--ADSSDCNTPCPGDSSQTCGG  82



Lambda      K        H        a         alpha
   0.317    0.136    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00021004

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00021006

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00021005

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00026357

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00021007

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00021008

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00021010

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00026358

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00026359

Length=239


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00026360

Length=304


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00026361

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00026362

Length=304


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00021014

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00021015

Length=384


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00021013

Length=319


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00021012

Length=386


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00021016

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00021019

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00026364

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          93.8    8e-24
CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  86.5    2e-21


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 93.8 bits (234),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 41/137 (30%), Positives = 73/137 (53%), Gaps = 10/137 (7%)

Query  214  GVGLSAVMGAKIAGCAQIIGIERHASRLELAKQLGATHVVQVDTTADPQSVSDAVLAATN  273
            GVGL+A+  AK AG A++I ++    +LELAK+LGA HV+    T     + + +   T 
Sbjct  1    GVGLAAIQLAKAAG-AKVIAVDGSEEKLELAKELGADHVINPKET----DLVEEIKELTG  55

Query  274  NLGVNIVLDTTGVPALIAQGVRMASFKGKVLQVGTAPETGSLTIPIHEFMVAGKQYMGVV  333
              GV++V D  G PA + Q +++    G+V+ VG       L +P+   ++     +G  
Sbjct  56   GKGVDVVFDCVGSPATLEQALKLLRPGGRVVVVGLPGGP--LPLPLAPLLLKELTILGSF  113

Query  334  EGDVNPKDYVPKMVKWV  350
             G  +P+++ P+ +  +
Sbjct  114  LG--SPEEF-PEALDLL  127


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 86.5 bits (215),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 58/133 (44%), Gaps = 33/133 (25%)

Query  38   ELLIEIVASGICQTDLHFAGAESGFGVHYPRIMGHEGAGYVREVGSGVQVAQIGDPVILS  97
            E+L+++ A+GIC +DLH     +   V  P I+GHE AG V EVG GV   ++GD V++ 
Sbjct  2    EVLVKVKAAGICGSDLHIYKGGN-PPVKLPLILGHEFAGEVVEVGPGVTGLKVGDRVVVE  60

Query  98   FS-ACRACESCETGHPAHCANFNPINFEVEPDNLVFSEEASTATEPSIYGRFFGQS---S  153
                C  CE C  G    C N                            GRF G      
Sbjct  61   PLIPCGKCEYCREGRYNLCPN----------------------------GRFLGYDRDGG  92

Query  154  FASYSIVREDSVV  166
            FA Y +V E ++V
Sbjct  93   FAEYVVVPERNLV  105



Lambda      K        H        a         alpha
   0.317    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00021017

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.121    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00021023

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            114     1e-28


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 114 bits (287),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 69/369 (19%), Positives = 130/369 (35%), Gaps = 25/369 (7%)

Query  50   LVWVYFLQILDKSVLGYGATFGLQADTHLTGNQYSLVGSIAPIAQLAWQPFSSFLIVKVP  109
            L    FL  L +S+LG      L  D  ++  +  L+ ++  +     QP +  L  +  
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  110  HRILMPSLVLGWGIAQTCMAACHSFGGLMATRFFLGLFEAGCLPLFSIITSQWYRRAEQP  169
             R ++   +L + +    +    S   L+  R   GL      P    + + W+   E+ 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  170  IRVAAWYSTNGLATIVAAALSYGLAHIKSDLLKEWQIIFLFVGLITVISAPIVYWKLDND  229
              +    +  GL   +   L   LA +       W+  FL + ++++++A ++       
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFG-----WRAAFLILAILSLLAAVLLLLPRP--  173

Query  230  IASARFLTEQEKLQAMERLRANQTGAGSREFKLSHVVEAGLEPKTYLWIAMAMLLNIGAS  289
                                     A      L    +A L       +   +L      
Sbjct  174  ----------------PPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFF  217

Query  290  VTNVFGPLILKGLGFNKYTTTLLNMPFGALQWIVILLASYLAQKARLKGAVLAAFMVPVV  349
                + PL  + LG +     LL    G L  I  LL   L+ +   +  +L A ++ ++
Sbjct  218  GLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLIL  277

Query  350  AGLAMLHALPRNDSVQGALMAGYYLLAFLFAGNPLVVSWMVGNTAGMTKKSVVMSLYNAA  409
            A L +L       S+   L+    LL F F      ++ +V + A   ++     LYN A
Sbjct  278  AALGLLLLSLTLSSL--WLLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTA  335

Query  410  SAAGNIVGP  418
             + G  +GP
Sbjct  336  GSLGGALGP  344



Lambda      K        H        a         alpha
   0.324    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00021022

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00021025

Length=355


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00021026

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00026365

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00026366

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00021028

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00026367

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00026368

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00026369

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.130    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00021029

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.130    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00021031

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            99.8    1e-23


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 99.8 bits (249),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 131/351 (37%), Gaps = 45/351 (13%)

Query  52   WFITAIVTFSVFAITFTSSAYAASANELIPDFSISTEVFTVGLSLFVLGFAIGPAVWGPL  111
            +    +       +        A       D  IS     + L+LF LG+A+   + G L
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAE------DLGISPTEIGLLLTLFSLGYALAQPLAGRL  55

Query  112  SELYGRQALWIVSHIAMVAFIGGSAGSHNVATLLVLRFFSGTFGGSPLVNSGGAIADIFP  171
            S+ +GR+ + ++  +     +     + ++  LLVLR   G   G+    +   IAD FP
Sbjct  56   SDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFP  115

Query  172  PAQRGLAMTLYCVAPFLGPILGPIVGGFVSENVGWRWVQGVCCIFIGGIGIIGVIFVPET  231
            P +RG A+ L      LG  LGP++GG ++   GWR    +                   
Sbjct  116  PEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLIL------------------  157

Query  232  YGPVLLIRRASRLSQAHGKVYISILEKNQGKKKPSEVFQRALIRPWVLLFREPIVLVASL  291
               + L+        A   + +        + KP+E  + +LI  W  L R+P++ +  L
Sbjct  158  -AILSLL--------AAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWL--L  206

Query  292  YMAIIYGTVYMFMSAMPIVYNEQRGWSEGIGGLAFMGIAVGIIIGLAYAIYDNNRRYANL  351
               +++G  +  +     +Y E  G S  + GL      +   IG               
Sbjct  207  LALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGR---------  257

Query  352  LLSNSATAESRLPPAIVGAVALPVGMFAFAWTNSPRIHWSVSIILSAPFGF  402
             LS+      RL  A++  +   +G+   + T S        ++L   FG 
Sbjct  258  -LSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGL  307



Lambda      K        H        a         alpha
   0.325    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00021030

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.150    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00026370

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6     377     5e-132
CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain          61.2    3e-13 


>CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6.  
Length=293

 Score = 377 bits (971),  Expect = 5e-132, Method: Composition-based stats.
 Identities = 149/237 (63%), Positives = 174/237 (73%), Gaps = 5/237 (2%)

Query  125  SSLQPKASAVAEVPSFVWLDVAAKVPTMGTYLADIQAKNKAGANPPIAGIFVVYDLPDRD  184
            ++L  KA+ VA+VP+FVWLD  A +P +   LAD +A  KAG       + VVY+LPDRD
Sbjct  2    AALAAKAAKVADVPTFVWLDTIAAIPGLEDALADARAAAKAG---GRTPVLVVYNLPDRD  58

Query  185  CAALASNGEYSIANNGVANYKAYIDAIRAQLVKYSDVHTILVIEPDSLANLVTNLNVAKC  244
            CAALASNGE S A+ G+A YK YID I A +  YSD+  ++VIEPDSLANLVTNL+V KC
Sbjct  59   CAALASNGELSSADAGLARYKEYIDPIAAIIGDYSDLRAVVVIEPDSLANLVTNLSVPKC  118

Query  245  ANAQSAYLECVDYALKQLNL-PNVAMYLDAGHAGWLGWPANLGPAATLFAKVYTDAGSPA  303
            ANA SAY E + YALKQLN  PNV +YLDAGHAGWLGW ANLGPAA L AKVY  AG PA
Sbjct  119  ANAASAYEEGIAYALKQLNAPPNVYVYLDAGHAGWLGWDANLGPAAELLAKVYKAAGGPA  178

Query  304  AVRGLATNVANYNAWSLSTCPSYTQGDPNCDEKKYINAMAPLLKEAGFDAH-FIMDT  359
            +VRG ATNV+NYN     T PSYTQ +PN DEK Y  A++PLL  AGF AH FI+DT
Sbjct  179  SVRGFATNVSNYNPTDEPTSPSYTQWNPNFDEKHYGEALSPLLVAAGFPAHIFIIDT  235


>CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain.  
Length=29

 Score = 61.2 bits (150),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 17/28 (61%), Positives = 20/28 (71%), Gaps = 0/28 (0%)

Query  24  WGQCGGQGWSGPTSCVAGAACSTLNPYY  51
           WGQCGG GW+GPT+C +G  C   N YY
Sbjct  2   WGQCGGIGWTGPTTCASGYTCVYQNDYY  29



Lambda      K        H        a         alpha
   0.315    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00021032

Length=335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6     483     2e-174


>CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6.  
Length=293

 Score = 483 bits (1246),  Expect = 2e-174, Method: Composition-based stats.
 Identities = 192/296 (65%), Positives = 223/296 (75%), Gaps = 6/296 (2%)

Query  6    SSLQPKASAVAEVPSFVWLDVAAKVPTMGTYLADIQAKNKAGANPPIAGIFVVYDLPDRD  65
            ++L  KA+ VA+VP+FVWLD  A +P +   LAD +A  KAG       + VVY+LPDRD
Sbjct  2    AALAAKAAKVADVPTFVWLDTIAAIPGLEDALADARAAAKAG---GRTPVLVVYNLPDRD  58

Query  66   CAALASNGEYSIANNGVANYKAYIDAIRAQLVKYSDVHTILVIEPDSLANLVTNLNVAKC  125
            CAALASNGE S A+ G+A YK YID I A +  YSD+  ++VIEPDSLANLVTNL+V KC
Sbjct  59   CAALASNGELSSADAGLARYKEYIDPIAAIIGDYSDLRAVVVIEPDSLANLVTNLSVPKC  118

Query  126  ANAQSAYLECVDYALKQLNL-PNVAMYLDAGHAGWLGWPANLGPAATLFAKVYTDAGSPA  184
            ANA SAY E + YALKQLN  PNV +YLDAGHAGWLGW ANLGPAA L AKVY  AG PA
Sbjct  119  ANAASAYEEGIAYALKQLNAPPNVYVYLDAGHAGWLGWDANLGPAAELLAKVYKAAGGPA  178

Query  185  AVRGLATNVANYNAWSLSTCPSYTQGDPNCDEKKYINAMAPLLKEAGFDAH-FIMDTSRN  243
            +VRG ATNV+NYN     T PSYTQ +PN DEK Y  A++PLL  AGF AH FI+DTSRN
Sbjct  179  SVRGFATNVSNYNPTDEPTSPSYTQWNPNFDEKHYGEALSPLLVAAGFPAHIFIIDTSRN  238

Query  244  GVQPTKQNAWGDWCNVIGTGFGVRPSTNTGDPLQDAFVWIKPGGESDGTSNSTSPR  299
            G Q T +  WGDWCN  G GFGVRP+TNTGDPL DAFVW+KP GESDGTS+S++PR
Sbjct  239  GNQGT-RPEWGDWCNPPGAGFGVRPTTNTGDPLVDAFVWVKPPGESDGTSDSSAPR  293



Lambda      K        H        a         alpha
   0.315    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00021036

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6     486     1e-173
CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain          60.8    5e-13 


>CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6.  
Length=293

 Score = 486 bits (1253),  Expect = 1e-173, Method: Composition-based stats.
 Identities = 192/296 (65%), Positives = 223/296 (75%), Gaps = 6/296 (2%)

Query  125  SSLQPKASAVAEVPSFVWLDVAAKVPTMGTYLADIQAKNKAGANPPIAGIFVVYDLPDRD  184
            ++L  KA+ VA+VP+FVWLD  A +P +   LAD +A  KAG       + VVY+LPDRD
Sbjct  2    AALAAKAAKVADVPTFVWLDTIAAIPGLEDALADARAAAKAG---GRTPVLVVYNLPDRD  58

Query  185  CAALASNGEYSIANNGVANYKAYIDAIRAQLVKYSDVHTILVIEPDSLANLVTNLNVAKC  244
            CAALASNGE S A+ G+A YK YID I A +  YSD+  ++VIEPDSLANLVTNL+V KC
Sbjct  59   CAALASNGELSSADAGLARYKEYIDPIAAIIGDYSDLRAVVVIEPDSLANLVTNLSVPKC  118

Query  245  ANAQSAYLECVDYALKQLNL-PNVAMYLDAGHAGWLGWPANLGPAATLFAKVYTDAGSPA  303
            ANA SAY E + YALKQLN  PNV +YLDAGHAGWLGW ANLGPAA L AKVY  AG PA
Sbjct  119  ANAASAYEEGIAYALKQLNAPPNVYVYLDAGHAGWLGWDANLGPAAELLAKVYKAAGGPA  178

Query  304  AVRGLATNVANYNAWSLSTCPSYTQGDPNCDEKKYINAMAPLLKEAGFDAH-FIMDTSRN  362
            +VRG ATNV+NYN     T PSYTQ +PN DEK Y  A++PLL  AGF AH FI+DTSRN
Sbjct  179  SVRGFATNVSNYNPTDEPTSPSYTQWNPNFDEKHYGEALSPLLVAAGFPAHIFIIDTSRN  238

Query  363  GVQPTKQNAWGDWCNVIGTGFGVRPSTNTGDPLQDAFVWIKPGGESDGTSNSTSPR  418
            G Q T +  WGDWCN  G GFGVRP+TNTGDPL DAFVW+KP GESDGTS+S++PR
Sbjct  239  GNQGT-RPEWGDWCNPPGAGFGVRPTTNTGDPLVDAFVWVKPPGESDGTSDSSAPR  293


>CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain.  
Length=29

 Score = 60.8 bits (149),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 17/28 (61%), Positives = 20/28 (71%), Gaps = 0/28 (0%)

Query  24  WGQCGGQGWSGPTSCVAGAACSTLNPYY  51
           WGQCGG GW+GPT+C +G  C   N YY
Sbjct  2   WGQCGGIGWTGPTTCASGYTCVYQNDYY  29



Lambda      K        H        a         alpha
   0.314    0.128    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00021034

Length=186
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6     270     1e-92


>CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6.  
Length=293

 Score = 270 bits (692),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 106/151 (70%), Positives = 119/151 (79%), Gaps = 2/151 (1%)

Query  1    MYLDAGHAGWLGWPANLGPAATLFAKVYTDAGSPAAVRGLATNVANYNAWSLSTCPSYTQ  60
            +YLDAGHAGWLGW ANLGPAA L AKVY  AG PA+VRG ATNV+NYN     T PSYTQ
Sbjct  144  VYLDAGHAGWLGWDANLGPAAELLAKVYKAAGGPASVRGFATNVSNYNPTDEPTSPSYTQ  203

Query  61   GDPNCDEKKYINAMAPLLKEAGFDAH-FIMDTSRNGVQPTKQNAWGDWCNVIGTGFGVRP  119
             +PN DEK Y  A++PLL  AGF AH FI+DTSRNG Q T +  WGDWCN  G GFGVRP
Sbjct  204  WNPNFDEKHYGEALSPLLVAAGFPAHIFIIDTSRNGNQGT-RPEWGDWCNPPGAGFGVRP  262

Query  120  STNTGDPLQDAFVWIKPGGESDGTSNSTSPR  150
            +TNTGDPL DAFVW+KP GESDGTS+S++PR
Sbjct  263  TTNTGDPLVDAFVWVKPPGESDGTSDSSAPR  293



Lambda      K        H        a         alpha
   0.315    0.132    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00021033

Length=186
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6     270     1e-92


>CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6.  
Length=293

 Score = 270 bits (692),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 106/151 (70%), Positives = 119/151 (79%), Gaps = 2/151 (1%)

Query  1    MYLDAGHAGWLGWPANLGPAATLFAKVYTDAGSPAAVRGLATNVANYNAWSLSTCPSYTQ  60
            +YLDAGHAGWLGW ANLGPAA L AKVY  AG PA+VRG ATNV+NYN     T PSYTQ
Sbjct  144  VYLDAGHAGWLGWDANLGPAAELLAKVYKAAGGPASVRGFATNVSNYNPTDEPTSPSYTQ  203

Query  61   GDPNCDEKKYINAMAPLLKEAGFDAH-FIMDTSRNGVQPTKQNAWGDWCNVIGTGFGVRP  119
             +PN DEK Y  A++PLL  AGF AH FI+DTSRNG Q T +  WGDWCN  G GFGVRP
Sbjct  204  WNPNFDEKHYGEALSPLLVAAGFPAHIFIIDTSRNGNQGT-RPEWGDWCNPPGAGFGVRP  262

Query  120  STNTGDPLQDAFVWIKPGGESDGTSNSTSPR  150
            +TNTGDPL DAFVW+KP GESDGTS+S++PR
Sbjct  263  TTNTGDPLVDAFVWVKPPGESDGTSDSSAPR  293



Lambda      K        H        a         alpha
   0.315    0.132    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00021035

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6     484     2e-173


>CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6.  
Length=293

 Score = 484 bits (1249),  Expect = 2e-173, Method: Composition-based stats.
 Identities = 192/296 (65%), Positives = 223/296 (75%), Gaps = 6/296 (2%)

Query  102  SSLQPKASAVAEVPSFVWLDVAAKVPTMGTYLADIQAKNKAGANPPIAGIFVVYDLPDRD  161
            ++L  KA+ VA+VP+FVWLD  A +P +   LAD +A  KAG       + VVY+LPDRD
Sbjct  2    AALAAKAAKVADVPTFVWLDTIAAIPGLEDALADARAAAKAG---GRTPVLVVYNLPDRD  58

Query  162  CAALASNGEYSIANNGVANYKAYIDAIRAQLVKYSDVHTILVIEPDSLANLVTNLNVAKC  221
            CAALASNGE S A+ G+A YK YID I A +  YSD+  ++VIEPDSLANLVTNL+V KC
Sbjct  59   CAALASNGELSSADAGLARYKEYIDPIAAIIGDYSDLRAVVVIEPDSLANLVTNLSVPKC  118

Query  222  ANAQSAYLECVDYALKQLNL-PNVAMYLDAGHAGWLGWPANLGPAATLFAKVYTDAGSPA  280
            ANA SAY E + YALKQLN  PNV +YLDAGHAGWLGW ANLGPAA L AKVY  AG PA
Sbjct  119  ANAASAYEEGIAYALKQLNAPPNVYVYLDAGHAGWLGWDANLGPAAELLAKVYKAAGGPA  178

Query  281  AVRGLATNVANYNAWSLSTCPSYTQGDPNCDEKKYINAMAPLLKEAGFDAH-FIMDTSRN  339
            +VRG ATNV+NYN     T PSYTQ +PN DEK Y  A++PLL  AGF AH FI+DTSRN
Sbjct  179  SVRGFATNVSNYNPTDEPTSPSYTQWNPNFDEKHYGEALSPLLVAAGFPAHIFIIDTSRN  238

Query  340  GVQPTKQNAWGDWCNVIGTGFGVRPSTNTGDPLQDAFVWIKPGGESDGTSNSTSPR  395
            G Q T +  WGDWCN  G GFGVRP+TNTGDPL DAFVW+KP GESDGTS+S++PR
Sbjct  239  GNQGT-RPEWGDWCNPPGAGFGVRPTTNTGDPLVDAFVWVKPPGESDGTSDSSAPR  293



Lambda      K        H        a         alpha
   0.314    0.129    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00026371

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6     478     2e-170


>CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6.  
Length=293

 Score = 478 bits (1232),  Expect = 2e-170, Method: Composition-based stats.
 Identities = 192/313 (61%), Positives = 223/313 (71%), Gaps = 23/313 (7%)

Query  102  SSLQPKASAVAEVPSFVWLDVAAKVPTMGTYLADIQAKNKAGANPPIAGIFVVYDLPDRD  161
            ++L  KA+ VA+VP+FVWLD  A +P +   LAD +A  KAG       + VVY+LPDRD
Sbjct  2    AALAAKAAKVADVPTFVWLDTIAAIPGLEDALADARAAAKAG---GRTPVLVVYNLPDRD  58

Query  162  CAALASNGEYSIANNGVANYKAYIDAIRAQLVKYSDVHTILVIEPDSLANLVTNLNVAKC  221
            CAALASNGE S A+ G+A YK YID I A +  YSD+  ++VIEPDSLANLVTNL+V KC
Sbjct  59   CAALASNGELSSADAGLARYKEYIDPIAAIIGDYSDLRAVVVIEPDSLANLVTNLSVPKC  118

Query  222  ANAQSAYLECVDYALKQLNL-PNVAMYLDAGMPHFPHSVSLPDTNSSGHAGWLGWPANLG  280
            ANA SAY E + YALKQLN  PNV +YLDA                 GHAGWLGW ANLG
Sbjct  119  ANAASAYEEGIAYALKQLNAPPNVYVYLDA-----------------GHAGWLGWDANLG  161

Query  281  PAATLFAKVYTDAGSPAAVRGLATNVANYNAWSLSTCPSYTQGDPNCDEKKYINAMAPLL  340
            PAA L AKVY  AG PA+VRG ATNV+NYN     T PSYTQ +PN DEK Y  A++PLL
Sbjct  162  PAAELLAKVYKAAGGPASVRGFATNVSNYNPTDEPTSPSYTQWNPNFDEKHYGEALSPLL  221

Query  341  KEAGFDAH-FIMDTSRNGVQPTKQNAWGDWCNVIGTGFGVRPSTNTGDPLQDAFVWIKPG  399
              AGF AH FI+DTSRNG Q T +  WGDWCN  G GFGVRP+TNTGDPL DAFVW+KP 
Sbjct  222  VAAGFPAHIFIIDTSRNGNQGT-RPEWGDWCNPPGAGFGVRPTTNTGDPLVDAFVWVKPP  280

Query  400  GESDGTSNSTSPR  412
            GESDGTS+S++PR
Sbjct  281  GESDGTSDSSAPR  293



Lambda      K        H        a         alpha
   0.314    0.129    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00026372

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6     426     6e-151
CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain          60.8    5e-13 


>CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6.  
Length=293

 Score = 426 bits (1098),  Expect = 6e-151, Method: Composition-based stats.
 Identities = 169/268 (63%), Positives = 196/268 (73%), Gaps = 6/268 (2%)

Query  125  SSLQPKASAVAEVPSFVWLDVAAKVPTMGTYLADIQAKNKAGANPPIAGIFVVYDLPDRD  184
            ++L  KA+ VA+VP+FVWLD  A +P +   LAD +A  KAG       + VVY+LPDRD
Sbjct  2    AALAAKAAKVADVPTFVWLDTIAAIPGLEDALADARAAAKAG---GRTPVLVVYNLPDRD  58

Query  185  CAALASNGEYSIANNGVANYKAYIDAIRAQLVKYSDVHTILVIEPDSLANLVTNLNVAKC  244
            CAALASNGE S A+ G+A YK YID I A +  YSD+  ++VIEPDSLANLVTNL+V KC
Sbjct  59   CAALASNGELSSADAGLARYKEYIDPIAAIIGDYSDLRAVVVIEPDSLANLVTNLSVPKC  118

Query  245  ANAQSAYLECVDYALKQLNL-PNVAMYLDAGHAGWLGWPANLGPAATLFAKVYTDAGSPA  303
            ANA SAY E + YALKQLN  PNV +YLDAGHAGWLGW ANLGPAA L AKVY  AG PA
Sbjct  119  ANAASAYEEGIAYALKQLNAPPNVYVYLDAGHAGWLGWDANLGPAAELLAKVYKAAGGPA  178

Query  304  AVRGLATNVANYNAWSLSTCPSYTQGDPNCDEKKYINAMAPLLKEAGFDAH-FIMDTCRN  362
            +VRG ATNV+NYN     T PSYTQ +PN DEK Y  A++PLL  AGF AH FI+DT RN
Sbjct  179  SVRGFATNVSNYNPTDEPTSPSYTQWNPNFDEKHYGEALSPLLVAAGFPAHIFIIDTSRN  238

Query  363  GVQPTKQNAWGDWCNVIGTGFGVRPSTN  390
            G Q T +  WGDWCN  G GFGVRP+TN
Sbjct  239  GNQGT-RPEWGDWCNPPGAGFGVRPTTN  265


>CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain.  
Length=29

 Score = 60.8 bits (149),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 17/28 (61%), Positives = 20/28 (71%), Gaps = 0/28 (0%)

Query  24  WGQCGGQGWSGPTSCVAGAACSTLNPYY  51
           WGQCGG GW+GPT+C +G  C   N YY
Sbjct  2   WGQCGGIGWTGPTTCASGYTCVYQNDYY  29



Lambda      K        H        a         alpha
   0.315    0.128    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00021037

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6     486     2e-173
CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain          61.2    4e-13 


>CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6.  
Length=293

 Score = 486 bits (1253),  Expect = 2e-173, Method: Composition-based stats.
 Identities = 192/296 (65%), Positives = 223/296 (75%), Gaps = 6/296 (2%)

Query  125  SSLQPKASAVAEVPSFVWLDVAAKVPTMGTYLADIQAKNKAGANPPIAGIFVVYDLPDRD  184
            ++L  KA+ VA+VP+FVWLD  A +P +   LAD +A  KAG       + VVY+LPDRD
Sbjct  2    AALAAKAAKVADVPTFVWLDTIAAIPGLEDALADARAAAKAG---GRTPVLVVYNLPDRD  58

Query  185  CAALASNGEYSIANNGVANYKAYIDAIRAQLVKYSDVHTILVIEPDSLANLVTNLNVAKC  244
            CAALASNGE S A+ G+A YK YID I A +  YSD+  ++VIEPDSLANLVTNL+V KC
Sbjct  59   CAALASNGELSSADAGLARYKEYIDPIAAIIGDYSDLRAVVVIEPDSLANLVTNLSVPKC  118

Query  245  ANAQSAYLECVDYALKQLNL-PNVAMYLDAGHAGWLGWPANLGPAATLFAKVYTDAGSPA  303
            ANA SAY E + YALKQLN  PNV +YLDAGHAGWLGW ANLGPAA L AKVY  AG PA
Sbjct  119  ANAASAYEEGIAYALKQLNAPPNVYVYLDAGHAGWLGWDANLGPAAELLAKVYKAAGGPA  178

Query  304  AVRGLATNVANYNAWSLSTCPSYTQGDPNCDEKKYINAMAPLLKEAGFDAH-FIMDTSRN  362
            +VRG ATNV+NYN     T PSYTQ +PN DEK Y  A++PLL  AGF AH FI+DTSRN
Sbjct  179  SVRGFATNVSNYNPTDEPTSPSYTQWNPNFDEKHYGEALSPLLVAAGFPAHIFIIDTSRN  238

Query  363  GVQPTKQNAWGDWCNVIGTGFGVRPSTNTGDPLQDAFVWIKPGGESDGTSNSTSPR  418
            G Q T +  WGDWCN  G GFGVRP+TNTGDPL DAFVW+KP GESDGTS+S++PR
Sbjct  239  GNQGT-RPEWGDWCNPPGAGFGVRPTTNTGDPLVDAFVWVKPPGESDGTSDSSAPR  293


>CDD:459918 pfam00734, CBM_1, Fungal cellulose binding domain.  
Length=29

 Score = 61.2 bits (150),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 17/28 (61%), Positives = 20/28 (71%), Gaps = 0/28 (0%)

Query  24  WGQCGGQGWSGPTSCVAGAACSTLNPYY  51
           WGQCGG GW+GPT+C +G  C   N YY
Sbjct  2   WGQCGGIGWTGPTTCASGYTCVYQNDYY  29



Lambda      K        H        a         alpha
   0.314    0.128    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 558268256


Query= TCONS_00026373

Length=186
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6     270     1e-92


>CDD:426212 pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6.  
Length=293

 Score = 270 bits (692),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 106/151 (70%), Positives = 119/151 (79%), Gaps = 2/151 (1%)

Query  1    MYLDAGHAGWLGWPANLGPAATLFAKVYTDAGSPAAVRGLATNVANYNAWSLSTCPSYTQ  60
            +YLDAGHAGWLGW ANLGPAA L AKVY  AG PA+VRG ATNV+NYN     T PSYTQ
Sbjct  144  VYLDAGHAGWLGWDANLGPAAELLAKVYKAAGGPASVRGFATNVSNYNPTDEPTSPSYTQ  203

Query  61   GDPNCDEKKYINAMAPLLKEAGFDAH-FIMDTSRNGVQPTKQNAWGDWCNVIGTGFGVRP  119
             +PN DEK Y  A++PLL  AGF AH FI+DTSRNG Q T +  WGDWCN  G GFGVRP
Sbjct  204  WNPNFDEKHYGEALSPLLVAAGFPAHIFIIDTSRNGNQGT-RPEWGDWCNPPGAGFGVRP  262

Query  120  STNTGDPLQDAFVWIKPGGESDGTSNSTSPR  150
            +TNTGDPL DAFVW+KP GESDGTS+S++PR
Sbjct  263  TTNTGDPLVDAFVWVKPPGESDGTSDSSAPR  293



Lambda      K        H        a         alpha
   0.315    0.132    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00021038

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00021039

Length=262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-te...  95.4    4e-25


>CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal 
domain.  C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, 
four helical up-and-down bundle.
Length=149

 Score = 95.4 bits (238),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 46/125 (37%), Positives = 61/125 (49%), Gaps = 6/125 (5%)

Query  61   GDGMRIIMTNFNHERLTIAVGVTRQARVALAAAFEYTMKREAFGKTLMDQPVVRHRLAKA  120
            G G R+ M   NHERL IA      AR AL  A  Y  +R+AFG+ L+D  +VRH+LA+ 
Sbjct  1    GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYARRRKAFGRPLIDFQLVRHKLAEM  60

Query  121  GAELETMWAWVEQILYQLCHLSKEEADQQLGGITALAKAKAAMVLNECAQCAVLLFGGAG  180
             AE+E     V +    L      +A    G   ++AK  A+    E A  A+ L GG G
Sbjct  61   AAEIEAARLLVYRAAEAL------DAGGPDGAEASMAKLYASEAAVEVADLAMQLHGGYG  114

Query  181  YTASG  185
            Y    
Sbjct  115  YLREY  119



Lambda      K        H        a         alpha
   0.321    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00026374

Length=262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-te...  95.4    4e-25


>CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal 
domain.  C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, 
four helical up-and-down bundle.
Length=149

 Score = 95.4 bits (238),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 46/125 (37%), Positives = 61/125 (49%), Gaps = 6/125 (5%)

Query  61   GDGMRIIMTNFNHERLTIAVGVTRQARVALAAAFEYTMKREAFGKTLMDQPVVRHRLAKA  120
            G G R+ M   NHERL IA      AR AL  A  Y  +R+AFG+ L+D  +VRH+LA+ 
Sbjct  1    GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYARRRKAFGRPLIDFQLVRHKLAEM  60

Query  121  GAELETMWAWVEQILYQLCHLSKEEADQQLGGITALAKAKAAMVLNECAQCAVLLFGGAG  180
             AE+E     V +    L      +A    G   ++AK  A+    E A  A+ L GG G
Sbjct  61   AAEIEAARLLVYRAAEAL------DAGGPDGAEASMAKLYASEAAVEVADLAMQLHGGYG  114

Query  181  YTASG  185
            Y    
Sbjct  115  YLREY  119



Lambda      K        H        a         alpha
   0.321    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00021040

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460090 pfam01161, PBP, Phosphatidylethanolamine-binding protein   76.2    2e-18


>CDD:460090 pfam01161, PBP, Phosphatidylethanolamine-binding protein.  
Length=136

 Score = 76.2 bits (188),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 49/151 (32%), Positives = 62/151 (41%), Gaps = 19/151 (13%)

Query  51   IPVKYSFFGEDLFPTLKWSAPPAVADNIKEWLLVVEDPDAPLAEPV--VHGLYYSIPASK  108
            +PVKY+  G +  P L WS  PA     K + LV+ DPDAP       +H +  +IPA+ 
Sbjct  2    LPVKYTCGGPNTSPPLAWSGAPAGT---KSFALVMIDPDAPKVGGSGWLHWVVTNIPATV  58

Query  109  CSVSNEDLKPTAAGSHLLRGGFQYGANRRGTI-YIPPRGMLGHGPHRYFFQVIGLLEPLA  167
                      T        G  Q G N  G   Y  P    G GPHRY F +  L  PL 
Sbjct  59   ----------TELPEGAPAGAVQ-GLNDFGGAGYGGPCPPAGDGPHRYVFTLYALDVPLL  107

Query  168  VSKLGAVVTKTEIIGLIEGRVVAWGQWMGVW  198
                G   TK E+     G V+A     G +
Sbjct  108  DRNWGF--TKAELGVAFAGHVLALAVLAGNY  136



Lambda      K        H        a         alpha
   0.319    0.140    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00021041

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            97.1    6e-23


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 97.1 bits (242),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 93/265 (35%), Gaps = 40/265 (15%)

Query  1    MLIAGFSDKVGRRPAYIICFTIYIAANIGLSLQNSYAALMVLRCIQSAGSSGTVALSNGL  60
             L    SD+ GRR   +I   ++    + L   +S   L+VLR +Q  G+      +  L
Sbjct  50   PLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALAL  109

Query  61   VGDMITSAERGSYIAVASIGLMLGPSLSPIIGGLISQYLDWHWIFWFLLILSSVFFAILL  120
            + D     ERG  + + S G  LG +L P++GGL++    W   F  L ILS +   +LL
Sbjct  110  IADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLL  169

Query  121  LFLPETCRKVVGDGSVPPPPLNNNVSDIIRHRRRKRAGLAADQASIAEYRKNYRFQLPNP  180
            L  P    K           L      ++R                              
Sbjct  170  LPRPPPESKRPKPAEEARLSLIVAWKALLRDPV---------------------------  202

Query  181  LPTLLIAFELETGLILLAAGLVFAGFYAVMTGASTSFHEIYGFNDIQSSLMYIPIGAGGI  240
                         L LL A L+F   +  +      + E+ G + + + L+    G  G 
Sbjct  203  -------------LWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGA  249

Query  241  VASFVTGPLVDWNFRRHARRAGLPV  265
            +   + G L D   RR      L +
Sbjct  250  IGRLLLGRLSDRLGRRRRLLLALLL  274



Lambda      K        H        a         alpha
   0.327    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00021042

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            121     4e-31


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 121 bits (305),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 75/313 (24%), Positives = 117/313 (37%), Gaps = 41/313 (13%)

Query  46   SLAGFFSPLSSSIYFPAL-DTIASSLQVSITKINLTVTTYLLLQGASPMLIAGFSDKVGR  104
             LA F + L  S+  PAL   +A  L +S T+I L +T + L    +  L    SD+ GR
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  105  RPAYIICFTIYIAANIGLSLQNSYAALMVLRCIQSAGSSGTVALSNGLVGDMITSAERGS  164
            R   +I   ++    + L   +S   L+VLR +Q  G+      +  L+ D     ERG 
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  165  YIAVASIGLMLGPSLSPIIGGLISQYLDWHWIFWFLLILSSVFFAILLLFLPETCRKVVG  224
             + + S G  LG +L P++GGL++    W   F  L ILS +   +LLL  P    K   
Sbjct  122  ALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPK  181

Query  225  DGSVPPPPLNNNVSDIIRHRRRKRAGLAADQASIAEYRKNYRFQLPNPLPTLLIAFELET  284
                    L      ++R                                          
Sbjct  182  PAEEARLSLIVAWKALLRDPV---------------------------------------  202

Query  285  GLILLAAGLVFAGFYAVMTGASTSFHEIYGFNDIQSSLMYIPIGAGGIVASFVTGPLVDW  344
             L LL A L+F   +  +      + E+ G + + + L+    G  G +   + G L D 
Sbjct  203  -LWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDR  261

Query  345  NFRRHARRAGLPV  357
              RR      L +
Sbjct  262  LGRRRRLLLALLL  274



Lambda      K        H        a         alpha
   0.324    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00021043

Length=765


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 976406992


Query= TCONS_00021045

Length=636


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 800810970


Query= TCONS_00021044

Length=636


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 800810970


Query= TCONS_00026375

Length=781


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 999689424


Query= TCONS_00021046

Length=636


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 800810970


Query= TCONS_00026376

Length=458


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 564403072


Query= TCONS_00021047

Length=372


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 446726320


Query= TCONS_00021048

Length=611


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 775608132


Query= TCONS_00026377

Length=294


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00021049

Length=523


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 654076512


Query= TCONS_00021050

Length=536


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00021052

Length=664


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 842105090


Query= TCONS_00021051

Length=636


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0745    0.140     1.90     42.6     43.6 

Effective search space used: 800810970


Query= TCONS_00021053

Length=633


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 796386600


Query= TCONS_00021056

Length=467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  197     3e-58


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 197 bits (502),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 112/453 (25%), Positives = 177/453 (39%), Gaps = 81/453 (18%)

Query  1    MQHPLGIVCSHEIAEQVSRSSKQFPYGLPKTPTLQDYKYL----------GEEWKSLRKR  50
               P+ ++   E  ++V     +   G P  P     +            G  W+ LR+ 
Sbjct  42   GPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGIVFANGPRWRQLRRF  101

Query  51   FNPGFAPQHILTLLPRILDKTVPFFETLDRYAESGEEFSLAETCTNLTFDIIGAVTMDED  110
              P F     L+  PR+ ++     E L + A       + +       ++I ++   E 
Sbjct  102  LTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLFRAALNVICSILFGER  161

Query  111  LGAQL-PLDKQSE--MVRLYHELTASYHQ----KSSVRAKPSNPLVIWQQYKLARKLNAI  163
             G+   P   +    +  L   L++   Q       ++  P       ++ K ARK    
Sbjct  162  FGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKYFPGP---HGRKLKRARK---K  215

Query  164  IKNHIKRKFAELKEASSDEKKS-RSVLALSLQG-----IEKLDAHVLDQTCDQLKTFLFA  217
            IK+ + +   E +E     KKS R  L   L         KL    L  T        FA
Sbjct  216  IKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVL---ELFFA  272

Query  218  GHDTTSIVLQWAFYELSRTPRVLESISRELDDVFGPDPSPAVVRDKLLAPNGGELLSKLP  277
            G DTTS  L WA YEL++ P V E +  E+D+V G   SP             + L  +P
Sbjct  273  GTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTY-----------DDLQNMP  321

Query  278  YTTAVIKEILRVYPSSGT-------------GRLVPEGSDVYIQLPDGRSLCIDGVLMYN  324
            Y  AVIKE LR++P                 G L+P+G+ V + L               
Sbjct  322  YLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNL---------------  366

Query  325  CETLIHRDETVYGESKDDFLPERWLGDSGADRIPSSAWRPFERGPRSCIGQGLATIEAQV  384
                +HRD  V+  + ++F PER+L ++G  R  S A+ PF  GPR+C+G+ LA +E ++
Sbjct  367  --YALHRDPEVF-PNPEEFDPERFLDENGKFR-KSFAFLPFGAGPRNCLGERLARMEMKL  422

Query  385  ILACAVRQYEFVKIGLGEVARDNAGEPILGPQG  417
             LA  ++ +E       E+        I    G
Sbjct  423  FLATLLQNFEV------ELPPGTDPPDIDETPG  449



Lambda      K        H        a         alpha
   0.318    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 578206408


Query= TCONS_00021055

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  157     2e-44


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 157 bits (398),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 86/287 (30%), Positives = 124/287 (43%), Gaps = 61/287 (21%)

Query  44   IWQQYKLARKLNAIIKNHIKRKFAELKEASSDEKKS-RSVLALSLQG-----IEKLDAHV  97
              ++ K ARK    IK+ + +   E +E     KKS R  L   L         KL    
Sbjct  205  HGRKLKRARK---KIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEE  261

Query  98   LDQTCDQLKTFLFAGHDTTSIVLQWAFYELSRTPRVLESISRELDDVFGPDPSPAVVRDK  157
            L  T        FAG DTTS  L WA YEL++ P V E +  E+D+V G   SP      
Sbjct  262  LRATVL---ELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTY----  314

Query  158  LLAPNGGELLSKLPYTTAVIKEILRVYPSSGT-------------GRLVPEGSDVYIQLP  204
                   + L  +PY  AVIKE LR++P                 G L+P+G+ V + L 
Sbjct  315  -------DDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNL-  366

Query  205  DGRSLCIDGVLMYNCETLIHRDETVYGESKDDFLPERWLGDSGADRIPSSAWRPFERGPR  264
                              +HRD  V+  + ++F PER+L ++G  R  S A+ PF  GPR
Sbjct  367  ----------------YALHRDPEVF-PNPEEFDPERFLDENGKFR-KSFAFLPFGAGPR  408

Query  265  SCIGQGLATIEAQVILACAVRQYEFVKIGLGEVARDNAGEPILGPQG  311
            +C+G+ LA +E ++ LA  ++ +E       E+        I    G
Sbjct  409  NCLGERLARMEMKLFLATLLQNFEV------ELPPGTDPPDIDETPG  449



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00021054

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  157     2e-44


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 157 bits (398),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 86/287 (30%), Positives = 124/287 (43%), Gaps = 61/287 (21%)

Query  44   IWQQYKLARKLNAIIKNHIKRKFAELKEASSDEKKS-RSVLALSLQG-----IEKLDAHV  97
              ++ K ARK    IK+ + +   E +E     KKS R  L   L         KL    
Sbjct  205  HGRKLKRARK---KIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEE  261

Query  98   LDQTCDQLKTFLFAGHDTTSIVLQWAFYELSRTPRVLESISRELDDVFGPDPSPAVVRDK  157
            L  T        FAG DTTS  L WA YEL++ P V E +  E+D+V G   SP      
Sbjct  262  LRATVL---ELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTY----  314

Query  158  LLAPNGGELLSKLPYTTAVIKEILRVYPSSGT-------------GRLVPEGSDVYIQLP  204
                   + L  +PY  AVIKE LR++P                 G L+P+G+ V + L 
Sbjct  315  -------DDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNL-  366

Query  205  DGRSLCIDGVLMYNCETLIHRDETVYGESKDDFLPERWLGDSGADRIPSSAWRPFERGPR  264
                              +HRD  V+  + ++F PER+L ++G  R  S A+ PF  GPR
Sbjct  367  ----------------YALHRDPEVF-PNPEEFDPERFLDENGKFR-KSFAFLPFGAGPR  408

Query  265  SCIGQGLATIEAQVILACAVRQYEFVKIGLGEVARDNAGEPILGPQG  311
            +C+G+ LA +E ++ LA  ++ +E       E+        I    G
Sbjct  409  NCLGERLARMEMKLFLATLLQNFEV------ELPPGTDPPDIDETPG  449



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00021058

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  157     2e-44


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 157 bits (398),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 86/287 (30%), Positives = 124/287 (43%), Gaps = 61/287 (21%)

Query  44   IWQQYKLARKLNAIIKNHIKRKFAELKEASSDEKKS-RSVLALSLQG-----IEKLDAHV  97
              ++ K ARK    IK+ + +   E +E     KKS R  L   L         KL    
Sbjct  205  HGRKLKRARK---KIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEE  261

Query  98   LDQTCDQLKTFLFAGHDTTSIVLQWAFYELSRTPRVLESISRELDDVFGPDPSPAVVRDK  157
            L  T        FAG DTTS  L WA YEL++ P V E +  E+D+V G   SP      
Sbjct  262  LRATVL---ELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTY----  314

Query  158  LLAPNGGELLSKLPYTTAVIKEILRVYPSSGT-------------GRLVPEGSDVYIQLP  204
                   + L  +PY  AVIKE LR++P                 G L+P+G+ V + L 
Sbjct  315  -------DDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNL-  366

Query  205  DGRSLCIDGVLMYNCETLIHRDETVYGESKDDFLPERWLGDSGADRIPSSAWRPFERGPR  264
                              +HRD  V+  + ++F PER+L ++G  R  S A+ PF  GPR
Sbjct  367  ----------------YALHRDPEVF-PNPEEFDPERFLDENGKFR-KSFAFLPFGAGPR  408

Query  265  SCIGQGLATIEAQVILACAVRQYEFVKIGLGEVARDNAGEPILGPQG  311
            +C+G+ LA +E ++ LA  ++ +E       E+        I    G
Sbjct  409  NCLGERLARMEMKLFLATLLQNFEV------ELPPGTDPPDIDETPG  449



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00021057

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  207     4e-62


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 207 bits (529),  Expect = 4e-62, Method: Composition-based stats.
 Identities = 113/453 (25%), Positives = 180/453 (40%), Gaps = 71/453 (16%)

Query  1    MQHPLGIVCSHEIAEQVSRSSKQFPYGLPKTPTLQDYKYLVGPHSILTSEGEEWKSLRKR  60
               P+ ++   E  ++V     +   G P  P     +       I+ + G  W+ LR+ 
Sbjct  42   GPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGIVFANGPRWRQLRRF  101

Query  61   FNPGFAPQHILTLLPRILDKTVPFFETLDRYAESGEEFSLAETCTNLTFDIIGAVTMDED  120
              P F     L+  PR+ ++     E L + A       + +       ++I ++   E 
Sbjct  102  LTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLFRAALNVICSILFGER  161

Query  121  LGAQL-PLDKQSE--MVRLYHELTASYHQ----KSSVRAKPSNPLVIWQQYKLARKLNAI  173
             G+   P   +    +  L   L++   Q       ++  P       ++ K ARK    
Sbjct  162  FGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKYFPGP---HGRKLKRARK---K  215

Query  174  IKNHIKRKFAELKEASSDEKKS-RSVLALSLQG-----IEKLDAHVLDQTCDQLKTFLFA  227
            IK+ + +   E +E     KKS R  L   L         KL    L  T        FA
Sbjct  216  IKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVL---ELFFA  272

Query  228  GHDTTSIVLQWAFYELSRTPRVLESISRELDDVFGPDPSPAVVRDKLLAPNGGELLSKLP  287
            G DTTS  L WA YEL++ P V E +  E+D+V G   SP             + L  +P
Sbjct  273  GTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTY-----------DDLQNMP  321

Query  288  YTTAVIKEILRVYPSSGT-------------GRLVPEGSDVYIQLPDGRSLCIDGVLMYN  334
            Y  AVIKE LR++P                 G L+P+G+ V + L               
Sbjct  322  YLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNL---------------  366

Query  335  CETLIHRDETVYGESKDDFLPERWLGDSGADRIPSSAWRPFERGPRSCIGQGLATIEAQV  394
                +HRD  V+  + ++F PER+L ++G  R  S A+ PF  GPR+C+G+ LA +E ++
Sbjct  367  --YALHRDPEVF-PNPEEFDPERFLDENGKFR-KSFAFLPFGAGPRNCLGERLARMEMKL  422

Query  395  ILACAVRQYEFVKIGLGEVARDNAGEPILGPQG  427
             LA  ++ +E       E+        I    G
Sbjct  423  FLATLLQNFEV------ELPPGTDPPDIDETPG  449



Lambda      K        H        a         alpha
   0.318    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593543448


Query= TCONS_00021059

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  157     2e-44


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 157 bits (398),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 86/287 (30%), Positives = 124/287 (43%), Gaps = 61/287 (21%)

Query  44   IWQQYKLARKLNAIIKNHIKRKFAELKEASSDEKKS-RSVLALSLQG-----IEKLDAHV  97
              ++ K ARK    IK+ + +   E +E     KKS R  L   L         KL    
Sbjct  205  HGRKLKRARK---KIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEE  261

Query  98   LDQTCDQLKTFLFAGHDTTSIVLQWAFYELSRTPRVLESISRELDDVFGPDPSPAVVRDK  157
            L  T        FAG DTTS  L WA YEL++ P V E +  E+D+V G   SP      
Sbjct  262  LRATVL---ELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTY----  314

Query  158  LLAPNGGELLSKLPYTTAVIKEILRVYPSSGT-------------GRLVPEGSDVYIQLP  204
                   + L  +PY  AVIKE LR++P                 G L+P+G+ V + L 
Sbjct  315  -------DDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNL-  366

Query  205  DGRSLCIDGVLMYNCETLIHRDETVYGESKDDFLPERWLGDSGADRIPSSAWRPFERGPR  264
                              +HRD  V+  + ++F PER+L ++G  R  S A+ PF  GPR
Sbjct  367  ----------------YALHRDPEVF-PNPEEFDPERFLDENGKFR-KSFAFLPFGAGPR  408

Query  265  SCIGQGLATIEAQVILACAVRQYEFVKIGLGEVARDNAGEPILGPQG  311
            +C+G+ LA +E ++ LA  ++ +E       E+        I    G
Sbjct  409  NCLGERLARMEMKLFLATLLQNFEV------ELPPGTDPPDIDETPG  449



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00021060

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  208     2e-61


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 208 bits (531),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 122/504 (24%), Positives = 199/504 (39%), Gaps = 84/504 (17%)

Query  39   PQPKPSRIWGHMKDLNAFISRGEPNRHIDYVFAEIKAHLGNPPLYLLDARPMQHPLGIVC  98
            P P P  ++G++  L     +G  +     +  +     G  P++ L       P+ ++ 
Sbjct  4    PPPLP--LFGNLLQLG---RKGNLHSVFTKLQKK----YG--PIFRL--YLGPKPVVVLS  50

Query  99   SHEIAEQVSRSSKQFPYGLPKTPTLQDYKYLVGPHSILTSEGEEWKSLRKRFNPGFAPQH  158
              E  ++V     +   G P  P     +       I+ + G  W+ LR+   P F    
Sbjct  51   GPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFG  110

Query  159  ILTLLPRILDKTVPFFETLDRYAESGEEFSLAETCTNLTFDIIGAVTMDEDLGAQL-PLD  217
             L+  PR+ ++     E L + A       + +       ++I ++   E  G+   P  
Sbjct  111  KLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLFRAALNVICSILFGERFGSLEDPKF  170

Query  218  KQSE--MVRLYHELTASYHQ----KSSVRAKPSNPLVIWQQYKLARKLNAIIKNHIKRKF  271
             +    +  L   L++   Q       ++  P       ++ K ARK    IK+ + +  
Sbjct  171  LELVKAVQELSSLLSSPSPQLLDLFPILKYFPGP---HGRKLKRARK---KIKDLLDKLI  224

Query  272  AELKEASSDEKKS-RSVLALSLQG-----IEKLDAHVLDQTCDQLKTFLFAGHDTTSIVL  325
             E +E     KKS R  L   L         KL    L  T        FAG DTTS  L
Sbjct  225  EERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVL---ELFFAGTDTTSSTL  281

Query  326  QWAFYELSRTPRVLESISRELDDVFGPDPSPAVVRDKLLAPNGGELLSKLPYTTAVIKEI  385
             WA YEL++ P V E +  E+D+V G   SP             + L  +PY  AVIKE 
Sbjct  282  SWALYELAKHPEVQEKLREEIDEVIGDKRSPTY-----------DDLQNMPYLDAVIKET  330

Query  386  LRVYPSSGT-------------GRLVPEGSDVYIQLPDGRSLCIDGVLMYNCETLIHRDE  432
            LR++P                 G L+P+G+ V + L                   +HRD 
Sbjct  331  LRLHPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNL-----------------YALHRDP  373

Query  433  TVYGESKDDFLPERWLGDSGADRIPSSAWRPFERGPRSCIGQGLATIEAQVILACAVRQY  492
             V+  + ++F PER+L ++G  R  S A+ PF  GPR+C+G+ LA +E ++ LA  ++ +
Sbjct  374  EVF-PNPEEFDPERFLDENGKFR-KSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNF  431

Query  493  EFVKIGLGEVARDNAGEPILGPQG  516
            E       E+        I    G
Sbjct  432  EV------ELPPGTDPPDIDETPG  449



Lambda      K        H        a         alpha
   0.320    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00021061

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  157     2e-44


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 157 bits (398),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 86/287 (30%), Positives = 124/287 (43%), Gaps = 61/287 (21%)

Query  44   IWQQYKLARKLNAIIKNHIKRKFAELKEASSDEKKS-RSVLALSLQG-----IEKLDAHV  97
              ++ K ARK    IK+ + +   E +E     KKS R  L   L         KL    
Sbjct  205  HGRKLKRARK---KIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEE  261

Query  98   LDQTCDQLKTFLFAGHDTTSIVLQWAFYELSRTPRVLESISRELDDVFGPDPSPAVVRDK  157
            L  T        FAG DTTS  L WA YEL++ P V E +  E+D+V G   SP      
Sbjct  262  LRATVL---ELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTY----  314

Query  158  LLAPNGGELLSKLPYTTAVIKEILRVYPSSGT-------------GRLVPEGSDVYIQLP  204
                   + L  +PY  AVIKE LR++P                 G L+P+G+ V + L 
Sbjct  315  -------DDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNL-  366

Query  205  DGRSLCIDGVLMYNCETLIHRDETVYGESKDDFLPERWLGDSGADRIPSSAWRPFERGPR  264
                              +HRD  V+  + ++F PER+L ++G  R  S A+ PF  GPR
Sbjct  367  ----------------YALHRDPEVF-PNPEEFDPERFLDENGKFR-KSFAFLPFGAGPR  408

Query  265  SCIGQGLATIEAQVILACAVRQYEFVKIGLGEVARDNAGEPILGPQG  311
            +C+G+ LA +E ++ LA  ++ +E       E+        I    G
Sbjct  409  NCLGERLARMEMKLFLATLLQNFEV------ELPPGTDPPDIDETPG  449



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00021062

Length=569
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  205     2e-60


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 205 bits (524),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 115/462 (25%), Positives = 184/462 (40%), Gaps = 73/462 (16%)

Query  84   PLYLLDARPMQHPLGIVCSHEIAEQVSRSSKQFPYGLPKTPTLQDYKYLVGPHSILTSEG  143
            P++ L       P+ ++   E  ++V     +   G P  P     +       I+ + G
Sbjct  35   PIFRL--YLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGIVFANG  92

Query  144  EEWKSLRKRFNPGFAPQHILTLLPRILDKTVPFFETLDRYAESGEEFSLAETCTNLTFDI  203
              W+ LR+   P F     L+  PR+ ++     E L + A       + +       ++
Sbjct  93   PRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLFRAALNV  152

Query  204  IGAVTMDEDLGAQL-PLDKQSE--MVRLYHELTASYHQ----KSSVRAKPSNPLVIWQQY  256
            I ++   E  G+   P   +    +  L   L++   Q       ++  P       ++ 
Sbjct  153  ICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKYFPGP---HGRKL  209

Query  257  KLARKLNAIIKNHIKRKFAELKEASSDEKKS-RSVLALSLQG-----IEKLDAHVLDQTC  310
            K ARK    IK+ + +   E +E     KKS R  L   L         KL    L  T 
Sbjct  210  KRARK---KIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATV  266

Query  311  DQLKTFLFAGHDTTSIVLQWAFYELSRTPRVLESISRELDDVFGPDPSPAVVRDKLLAPN  370
                   FAG DTTS  L WA YEL++ P V E +  E+D+V G   SP           
Sbjct  267  L---ELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTY---------  314

Query  371  GGELLSKLPYTTAVIKEILRVYPSSGT-------------GRLVPEGSDVYIQLPDGRSL  417
              + L  +PY  AVIKE LR++P                 G L+P+G+ V + L      
Sbjct  315  --DDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNL------  366

Query  418  CIDGVLMYNCETLIHRDETVYGESKDDFLPERWLGDSGADRIPSSAWRPFERGPRSCIGQ  477
                         +HRD  V+  + ++F PER+L ++G  R  S A+ PF  GPR+C+G+
Sbjct  367  -----------YALHRDPEVF-PNPEEFDPERFLDENGKFR-KSFAFLPFGAGPRNCLGE  413

Query  478  GLATIEAQVILACAVRQYEFVKIGLGEVARDNAGEPILGPQG  519
             LA +E ++ LA  ++ +E       E+        I    G
Sbjct  414  RLARMEMKLFLATLLQNFEV------ELPPGTDPPDIDETPG  449



Lambda      K        H        a         alpha
   0.319    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 712842156


Query= TCONS_00021063

Length=132
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  70.0    1e-15


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 70.0 bits (172),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 29/89 (33%), Positives = 48/89 (54%), Gaps = 8/89 (9%)

Query  8    IHRDETVYGESKDDFLPERWLGDSGADRIPSSAWRPFERGPRSCIGQGLATIEAQVILAC  67
            +HRD  V+  + ++F PER+L ++G  R  S A+ PF  GPR+C+G+ LA +E ++ LA 
Sbjct  369  LHRDPEVF-PNPEEFDPERFLDENGKFR-KSFAFLPFGAGPRNCLGERLARMEMKLFLAT  426

Query  68   AVRQYEFVKIGLGEVARDNAGEPILGPQG  96
             ++ +E       E+        I    G
Sbjct  427  LLQNFEV------ELPPGTDPPDIDETPG  449



Lambda      K        H        a         alpha
   0.318    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00026379

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               74.8    9e-19


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 74.8 bits (184),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query  69   LLLEASKGHTAVVCLLLEYSASIDPTNADGDTALMIAVHNGHHETILSLLARSVAIDCVN  128
            L L A  G+  +V LLLE  A  +  + +G TAL +A  NGH E I+ LL     ++  +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHADVNLKD  59

Query  129  HAHRTALSRAAENDHDKIVEILLQYGTEVDLPN  161
            +  RTAL  AA + H +IV++LL+ G ++++ +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00026380

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               72.1    5e-18


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 72.1 bits (177),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query  39   LLLEASKGHTAVVCLLLEYSASIDPTNADGDTALMIAVHNGHHETILSLLARSVAIDCVN  98
            L L A  G+  +V LLLE  A  +  + +G TAL +A  NGH E I+ LL     ++  +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHADVNLKD  59

Query  99   HAHRTALSRAAENDHDKIVEILLQYGTEVDLPN  131
            +  RTAL  AA + H +IV++LL+ G ++++ +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00026378

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               72.1    5e-18


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 72.1 bits (177),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query  39   LLLEASKGHTAVVCLLLEYSASIDPTNADGDTALMIAVHNGHHETILSLLARSVAIDCVN  98
            L L A  G+  +V LLLE  A  +  + +G TAL +A  NGH E I+ LL     ++  +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHADVNLKD  59

Query  99   HAHRTALSRAAENDHDKIVEILLQYGTEVDLPN  131
            +  RTAL  AA + H +IV++LL+ G ++++ +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00021064

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               74.8    9e-19


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 74.8 bits (184),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query  69   LLLEASKGHTAVVCLLLEYSASIDPTNADGDTALMIAVHNGHHETILSLLARSVAIDCVN  128
            L L A  G+  +V LLLE  A  +  + +G TAL +A  NGH E I+ LL     ++  +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHADVNLKD  59

Query  129  HAHRTALSRAAENDHDKIVEILLQYGTEVDLPN  161
            +  RTAL  AA + H +IV++LL+ G ++++ +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00026381

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00026382

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               72.1    5e-18


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 72.1 bits (177),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query  39   LLLEASKGHTAVVCLLLEYSASIDPTNADGDTALMIAVHNGHHETILSLLARSVAIDCVN  98
            L L A  G+  +V LLLE  A  +  + +G TAL +A  NGH E I+ LL     ++  +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHADVNLKD  59

Query  99   HAHRTALSRAAENDHDKIVEILLQYGTEVDLPN  131
            +  RTAL  AA + H +IV++LL+ G ++++ +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00026383

Length=143
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               72.1    4e-18


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 72.1 bits (177),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query  39   LLLEASKGHTAVVCLLLEYSASIDPTNADGDTALMIAVHNGHHETILSLLARSVAIDCVN  98
            L L A  G+  +V LLLE  A  +  + +G TAL +A  NGH E I+ LL     ++  +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHADVNLKD  59

Query  99   HAHRTALSRAAENDHDKIVEILLQYGTEVDLPN  131
            +  RTAL  AA + H +IV++LL+ G ++++ +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.316    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00026385

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00026384

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               74.8    9e-19


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 74.8 bits (184),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query  69   LLLEASKGHTAVVCLLLEYSASIDPTNADGDTALMIAVHNGHHETILSLLARSVAIDCVN  128
            L L A  G+  +V LLLE  A  +  + +G TAL +A  NGH E I+ LL     ++  +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHADVNLKD  59

Query  129  HAHRTALSRAAENDHDKIVEILLQYGTEVDLPN  161
            +  RTAL  AA + H +IV++LL+ G ++++ +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00021065

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               72.1    5e-18


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 72.1 bits (177),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query  39   LLLEASKGHTAVVCLLLEYSASIDPTNADGDTALMIAVHNGHHETILSLLARSVAIDCVN  98
            L L A  G+  +V LLLE  A  +  + +G TAL +A  NGH E I+ LL     ++  +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHADVNLKD  59

Query  99   HAHRTALSRAAENDHDKIVEILLQYGTEVDLPN  131
            +  RTAL  AA + H +IV++LL+ G ++++ +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00021066

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               72.1    5e-18


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 72.1 bits (177),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query  39   LLLEASKGHTAVVCLLLEYSASIDPTNADGDTALMIAVHNGHHETILSLLARSVAIDCVN  98
            L L A  G+  +V LLLE  A  +  + +G TAL +A  NGH E I+ LL     ++  +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHADVNLKD  59

Query  99   HAHRTALSRAAENDHDKIVEILLQYGTEVDLPN  131
            +  RTAL  AA + H +IV++LL+ G ++++ +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00021068

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               72.1    5e-18


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 72.1 bits (177),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query  39   LLLEASKGHTAVVCLLLEYSASIDPTNADGDTALMIAVHNGHHETILSLLARSVAIDCVN  98
            L L A  G+  +V LLLE  A  +  + +G TAL +A  NGH E I+ LL     ++  +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHADVNLKD  59

Query  99   HAHRTALSRAAENDHDKIVEILLQYGTEVDLPN  131
            +  RTAL  AA + H +IV++LL+ G ++++ +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00021067

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               74.8    9e-19


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 74.8 bits (184),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query  69   LLLEASKGHTAVVCLLLEYSASIDPTNADGDTALMIAVHNGHHETILSLLARSVAIDCVN  128
            L L A  G+  +V LLLE  A  +  + +G TAL +A  NGH E I+ LL     ++  +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHADVNLKD  59

Query  129  HAHRTALSRAAENDHDKIVEILLQYGTEVDLPN  161
            +  RTAL  AA + H +IV++LL+ G ++++ +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00026386

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               72.1    5e-18


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 72.1 bits (177),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query  39   LLLEASKGHTAVVCLLLEYSASIDPTNADGDTALMIAVHNGHHETILSLLARSVAIDCVN  98
            L L A  G+  +V LLLE  A  +  + +G TAL +A  NGH E I+ LL     ++  +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHADVNLKD  59

Query  99   HAHRTALSRAAENDHDKIVEILLQYGTEVDLPN  131
            +  RTAL  AA + H +IV++LL+ G ++++ +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00026387

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               75.9    4e-19


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 75.9 bits (187),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query  69   LLLEASKGHTAVVCLLLEYSASIDPTNADGDTALMIAVHNGHHETILSLLARSVAIDCVN  128
            L L A  G+  +V LLLE  A  +  + +G TAL +A  NGH E I+ LL     ++  +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHADVNLKD  59

Query  129  HAHRTALSRAAENDHDKIVEILLQYGTEVDLPN  161
            +  RTAL  AA + H +IV++LL+ G ++++ +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.318    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00021069

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               74.8    9e-19


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 74.8 bits (184),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query  69   LLLEASKGHTAVVCLLLEYSASIDPTNADGDTALMIAVHNGHHETILSLLARSVAIDCVN  128
            L L A  G+  +V LLLE  A  +  + +G TAL +A  NGH E I+ LL     ++  +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHADVNLKD  59

Query  129  HAHRTALSRAAENDHDKIVEILLQYGTEVDLPN  161
            +  RTAL  AA + H +IV++LL+ G ++++ +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00026388

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               74.8    9e-19


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 74.8 bits (184),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query  69   LLLEASKGHTAVVCLLLEYSASIDPTNADGDTALMIAVHNGHHETILSLLARSVAIDCVN  128
            L L A  G+  +V LLLE  A  +  + +G TAL +A  NGH E I+ LL     ++  +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHADVNLKD  59

Query  129  HAHRTALSRAAENDHDKIVEILLQYGTEVDLPN  161
            +  RTAL  AA + H +IV++LL+ G ++++ +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00026389

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               72.1    5e-18


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 72.1 bits (177),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query  39   LLLEASKGHTAVVCLLLEYSASIDPTNADGDTALMIAVHNGHHETILSLLARSVAIDCVN  98
            L L A  G+  +V LLLE  A  +  + +G TAL +A  NGH E I+ LL     ++  +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHADVNLKD  59

Query  99   HAHRTALSRAAENDHDKIVEILLQYGTEVDLPN  131
            +  RTAL  AA + H +IV++LL+ G ++++ +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00021070

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               74.8    9e-19


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 74.8 bits (184),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query  69   LLLEASKGHTAVVCLLLEYSASIDPTNADGDTALMIAVHNGHHETILSLLARSVAIDCVN  128
            L L A  G+  +V LLLE  A  +  + +G TAL +A  NGH E I+ LL     ++  +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHADVNLKD  59

Query  129  HAHRTALSRAAENDHDKIVEILLQYGTEVDLPN  161
            +  RTAL  AA + H +IV++LL+ G ++++ +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00021071

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 7...  508     2e-180


>CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76.  Family 
of alpha-1,6-mannanases.
Length=348

 Score = 508 bits (1309),  Expect = 2e-180, Method: Composition-based stats.
 Identities = 193/352 (55%), Positives = 238/352 (68%), Gaps = 9/352 (3%)

Query  86   SIKNAASTAAYGAMSYYHGNESGQIPGAFPTK--WWEGSALFMAMLQYQYFTGDHTYNSD  143
            SIK+AA+T A G M YY+GNE G  PG  P    WWE  A+F A++ Y Y+TGD TYN  
Sbjct  1    SIKSAAATIAQGLMDYYNGNEPGGTPGMLPDPYYWWEAGAMFGALIDYWYYTGDSTYNDL  60

Query  144  VSLGLQWQAGDG-DYMPSNYSSYLGNDDQMFWGLAAMLAAELQFPDRSEGYSWLSLAQGV  202
            ++  L +QAG   DYMP+N S+  GNDDQ FWGLAAM AAE  FP  ++  SWL+LAQ V
Sbjct  61   ITQALLYQAGPNYDYMPANQSTTEGNDDQGFWGLAAMTAAERNFPPPTDEPSWLALAQAV  120

Query  203  YNTQVDRWDTSTCGGGLRWQIYTYQAGYTMKNAISNGGLFQLAARLARYTNNHTYYEWAE  262
            +NTQ  RWDT TCGGGLRWQI+ + +GY  KN+ISNG LFQLAARLARYT N TY +WAE
Sbjct  121  FNTQASRWDTETCGGGLRWQIFPWNSGYDYKNSISNGCLFQLAARLARYTGNQTYLDWAE  180

Query  263  KVWDWSCSSPLLNNKTWSVADSTNIEDGCESQGNNQWSYNYGTYLMGAAYMWNYTNGTNS  322
            KVWDWS    L+++  W V D  ++ D C      QW+YN GTYL GAAYM+NYT   + 
Sbjct  181  KVWDWSVDVGLIDDDDWLVYDGADVNDNCTDINKLQWTYNQGTYLSGAAYMYNYTG--DE  238

Query  323  KWATAVDGLLNNTLDIFFPAKYGGNIMSEVLCEPNEVCNDNEILFKGLVTSWLAFTALLV  382
            KW    +GLLN TL  FFP    GNIM EV CEP+  CN+++  FKG+++ WLA TA L 
Sbjct  239  KWLDRAEGLLNATLSHFFP---DGNIMYEVACEPSTTCNNDQRSFKGILSRWLALTAQLA  295

Query  383  PSTYDRILPKLQGSAVAAGATCTGNGN-NSCGVRWYTSKWDGWTGMEEQISV  433
            P T D ILPKL+ SA AA  +C+G  +  +CG+RW    WDG  G+ EQ+S 
Sbjct  296  PFTADTILPKLRASAEAAAKSCSGGSDGTTCGLRWLKGTWDGDYGLGEQMSA  347



Lambda      K        H        a         alpha
   0.315    0.130    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 634393654


Query= TCONS_00021072

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 7...  501     1e-178


>CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76.  Family 
of alpha-1,6-mannanases.
Length=348

 Score = 501 bits (1292),  Expect = 1e-178, Method: Composition-based stats.
 Identities = 193/352 (55%), Positives = 238/352 (68%), Gaps = 9/352 (3%)

Query  36   SIKNAASTAAYGAMSYYHGNESGQIPGAFPTK--WWEGSALFMAMLQYQYFTGDHTYNSD  93
            SIK+AA+T A G M YY+GNE G  PG  P    WWE  A+F A++ Y Y+TGD TYN  
Sbjct  1    SIKSAAATIAQGLMDYYNGNEPGGTPGMLPDPYYWWEAGAMFGALIDYWYYTGDSTYNDL  60

Query  94   VSLGLQWQAGDG-DYMPSNYSSYLGNDDQMFWGLAAMLAAELQFPDRSEGYSWLSLAQGV  152
            ++  L +QAG   DYMP+N S+  GNDDQ FWGLAAM AAE  FP  ++  SWL+LAQ V
Sbjct  61   ITQALLYQAGPNYDYMPANQSTTEGNDDQGFWGLAAMTAAERNFPPPTDEPSWLALAQAV  120

Query  153  YNTQVDRWDTSTCGGGLRWQIYTYQAGYTMKNAISNGGLFQLAARLARYTNNHTYYEWAE  212
            +NTQ  RWDT TCGGGLRWQI+ + +GY  KN+ISNG LFQLAARLARYT N TY +WAE
Sbjct  121  FNTQASRWDTETCGGGLRWQIFPWNSGYDYKNSISNGCLFQLAARLARYTGNQTYLDWAE  180

Query  213  KVWDWSCSSPLLNNKTWSVADSTNIEDGCESQGNNQWSYNYGTYLMGAAYMWNYTNGTNS  272
            KVWDWS    L+++  W V D  ++ D C      QW+YN GTYL GAAYM+NYT   + 
Sbjct  181  KVWDWSVDVGLIDDDDWLVYDGADVNDNCTDINKLQWTYNQGTYLSGAAYMYNYTG--DE  238

Query  273  KWATAVDGLLNNTLDIFFPAKYGGNIMSEVLCEPNEVCNDNEILFKGLVTSWLAFTALLV  332
            KW    +GLLN TL  FFP    GNIM EV CEP+  CN+++  FKG+++ WLA TA L 
Sbjct  239  KWLDRAEGLLNATLSHFFP---DGNIMYEVACEPSTTCNNDQRSFKGILSRWLALTAQLA  295

Query  333  PSTYDRILPKLQGSAVAAGATCTGNGN-NSCGVRWYTSKWDGWTGMEEQISV  383
            P T D ILPKL+ SA AA  +C+G  +  +CG+RW    WDG  G+ EQ+S 
Sbjct  296  PFTADTILPKLRASAEAAAKSCSGGSDGTTCGLRWLKGTWDGDYGLGEQMSA  347



Lambda      K        H        a         alpha
   0.315    0.131    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00021073

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00021074

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00026390

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00021075

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00021076

Length=779
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  61.4    1e-10


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 61.4 bits (149),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 48/234 (21%), Positives = 79/234 (34%), Gaps = 31/234 (13%)

Query  296  YLSGYHDHYPFMHIPTLDIE----------HVSLQLFLSMAALGARYCREPDTSLSLYRI  345
            +   +H  +P +H P+   +          + S  L L++ ALGA +   P    S    
Sbjct  4    FFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSS--  61

Query  346  ARTVTMEHIRRTYQFPGTGQFSEKFKLSTTESPESQDLLETVQALLLLHSVSSWFKRNPS  405
                                 +         SP S   L  +QALLLL         +  
Sbjct  62   -------LTDEAADGIHFFLRALILIHEDFSSPSSS--LWILQALLLLELYELGT-GDRK  111

Query  406  HHESLFMRSFMETMLREGGLNELPEQDG-SWKSWI-RRECVKRTSLIAFCYLNILTIVFD  463
             H      +    + R  GL+  P     SWK WI   E  +R     F    +++++  
Sbjct  112  LHWRYHGLAI--RLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILG  169

Query  464  ITPLILTEEISMDLPC-SEKEWHAPNAVAWMQ----ERSQTSPEPKLQDALSSL  512
              PL+   +I + LPC  +  W + +A           S++   P     LS +
Sbjct  170  RPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKI  223



Lambda      K        H        a         alpha
   0.318    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 996779120


Query= TCONS_00021077

Length=779
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  61.4    1e-10


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 61.4 bits (149),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 48/234 (21%), Positives = 79/234 (34%), Gaps = 31/234 (13%)

Query  296  YLSGYHDHYPFMHIPTLDIE----------HVSLQLFLSMAALGARYCREPDTSLSLYRI  345
            +   +H  +P +H P+   +          + S  L L++ ALGA +   P    S    
Sbjct  4    FFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSS--  61

Query  346  ARTVTMEHIRRTYQFPGTGQFSEKFKLSTTESPESQDLLETVQALLLLHSVSSWFKRNPS  405
                                 +         SP S   L  +QALLLL         +  
Sbjct  62   -------LTDEAADGIHFFLRALILIHEDFSSPSSS--LWILQALLLLELYELGT-GDRK  111

Query  406  HHESLFMRSFMETMLREGGLNELPEQDG-SWKSWI-RRECVKRTSLIAFCYLNILTIVFD  463
             H      +    + R  GL+  P     SWK WI   E  +R     F    +++++  
Sbjct  112  LHWRYHGLAI--RLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILG  169

Query  464  ITPLILTEEISMDLPC-SEKEWHAPNAVAWMQ----ERSQTSPEPKLQDALSSL  512
              PL+   +I + LPC  +  W + +A           S++   P     LS +
Sbjct  170  RPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKI  223



Lambda      K        H        a         alpha
   0.318    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0677    0.140     1.90     42.6     43.6 

Effective search space used: 996779120


Query= TCONS_00021078

Length=473


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 587408632


Query= TCONS_00026391

Length=473


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 587408632


Query= TCONS_00021079

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00026392

Length=771
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  177     1e-51
CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  122     5e-31


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 177 bits (451),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 87/234 (37%), Positives = 113/234 (48%), Gaps = 28/234 (12%)

Query  398  IVLLKNDK-TLPLKAKG-TLALIGPYANATKQMQGNY-EGPAKYIRTLLWAATQAGYDVK  454
            IVLLKN+   LPL  K   +A+IGP A+      G    G   Y+ T L        D+ 
Sbjct  1    IVLLKNENGLLPLPKKAKKIAVIGPNADDPPNGGGGSGTGNPPYLVTPLDGIRARAGDL-  59

Query  455  YAAGTAINT-------NSTAGFDAALSAAKQADVVVYAGGIDNTIEAEGRDRTTIAWPGN  507
            YA G  +         +  AG   A++AAK ADV +   G+D   E EG DRT +A PGN
Sbjct  60   YADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPETEGEGYDRTDLALPGN  119

Query  508  QVNLIDQLSKIGKPLVVVQFGGGQVDDSSLLSNPRVNALLWAGYPSQEGGSAIFDILTGK  567
            Q  LI  ++  GKP VVV   GG V+         V+A+L A YP QEGG+AI D+L G 
Sbjct  120  QDALIKAVAAAGKPTVVVLHSGGPVEMEPWA-EENVDAILAAWYPGQEGGNAIADVLFGD  178

Query  568  TAPAGRLPVTQYPADYVNQVPMTDMALRPGSNTPGRTYRWYDKAVLPFGFGLHY  621
              P+G+LPVT   +  +  +P     L P        Y        P G+GL Y
Sbjct  179  VNPSGKLPVTFPKS--LEDLPAEGGPLLP------DLY--------PEGYGLSY  216


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 122 bits (307),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 89/290 (31%), Positives = 127/290 (44%), Gaps = 51/290 (18%)

Query  78   RLGLPAYNWWSEALHGVAGSPGVEFADSGPFSYATSFPQPILLGATFDDDLIKQVATVVS  137
            RLG+P      +   G              F   T FP  I L AT D DL KQ+   ++
Sbjct  63   RLGIPLL-VAVDQEGGRVQR----------FGEGTMFPSAIALAATSDPDLAKQMGWAMA  111

Query  138  TEGRAFGNAGRSGLDF-WTPNINPFRDARWGRGQETPGEDPLHVSRYVYHLVDGLQNGIG  196
             E RA       G+D+ + P ++  RD RWG G+ +  EDP  VS     +++GLQ G G
Sbjct  112  REMRAL------GIDWDFAPVVDVARDPRWGIGERSFSEDPQLVSALAGAMIEGLQ-GAG  164

Query  197  PANPKVVATCKHFAAYDL------EDWNGVVRHSFNAEVSTQDLSEFYLPPFKSCARDAR  250
                 V+AT KHF  +        ++     R         Q L    L PF++ A +A 
Sbjct  165  -----VLATVKHFPGHGHGATDSHKETPTTPR-------PEQRLRTVDLLPFQA-AIEAG  211

Query  251  VDAVMCS---YNALNGVPACADSYLLQTILREHWKWDEPGRWITSDCGAIDDIYNGHNFT  307
            VDAVM +   Y++L+G PA    YLL  +LR+ W +D     + SD  ++  I +     
Sbjct  212  VDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKWGFDGI---VVSDDLSMKGIADHGGP-  267

Query  308  TTPAEAAATALNAGTDLD--CGTVFPKYLGQAADEGLYSNQTLDRALVRL  355
               AEA   AL AG D+         KYL +    G      +D A+ R+
Sbjct  268  ---AEAVRRALEAGVDIALVPEE-RTKYLKKVVKNGKLPMARIDAAVRRV  313



Lambda      K        H        a         alpha
   0.316    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 985137904


Query= TCONS_00021080

Length=771
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family ...  177     1e-51
CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  122     5e-31


>CDD:396478 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal 
domain.  This domain is involved in catalysis and may 
be involved in binding beta-glucan. This domain is found associated 
with pfam00933.
Length=216

 Score = 177 bits (451),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 87/234 (37%), Positives = 113/234 (48%), Gaps = 28/234 (12%)

Query  398  IVLLKNDK-TLPLKAKG-TLALIGPYANATKQMQGNY-EGPAKYIRTLLWAATQAGYDVK  454
            IVLLKN+   LPL  K   +A+IGP A+      G    G   Y+ T L        D+ 
Sbjct  1    IVLLKNENGLLPLPKKAKKIAVIGPNADDPPNGGGGSGTGNPPYLVTPLDGIRARAGDL-  59

Query  455  YAAGTAINT-------NSTAGFDAALSAAKQADVVVYAGGIDNTIEAEGRDRTTIAWPGN  507
            YA G  +         +  AG   A++AAK ADV +   G+D   E EG DRT +A PGN
Sbjct  60   YADGAHLTVILSNGTADDDAGIAEAVAAAKDADVAIVFVGLDPETEGEGYDRTDLALPGN  119

Query  508  QVNLIDQLSKIGKPLVVVQFGGGQVDDSSLLSNPRVNALLWAGYPSQEGGSAIFDILTGK  567
            Q  LI  ++  GKP VVV   GG V+         V+A+L A YP QEGG+AI D+L G 
Sbjct  120  QDALIKAVAAAGKPTVVVLHSGGPVEMEPWA-EENVDAILAAWYPGQEGGNAIADVLFGD  178

Query  568  TAPAGRLPVTQYPADYVNQVPMTDMALRPGSNTPGRTYRWYDKAVLPFGFGLHY  621
              P+G+LPVT   +  +  +P     L P        Y        P G+GL Y
Sbjct  179  VNPSGKLPVTFPKS--LEDLPAEGGPLLP------DLY--------PEGYGLSY  216


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 122 bits (307),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 89/290 (31%), Positives = 127/290 (44%), Gaps = 51/290 (18%)

Query  78   RLGLPAYNWWSEALHGVAGSPGVEFADSGPFSYATSFPQPILLGATFDDDLIKQVATVVS  137
            RLG+P      +   G              F   T FP  I L AT D DL KQ+   ++
Sbjct  63   RLGIPLL-VAVDQEGGRVQR----------FGEGTMFPSAIALAATSDPDLAKQMGWAMA  111

Query  138  TEGRAFGNAGRSGLDF-WTPNINPFRDARWGRGQETPGEDPLHVSRYVYHLVDGLQNGIG  196
             E RA       G+D+ + P ++  RD RWG G+ +  EDP  VS     +++GLQ G G
Sbjct  112  REMRAL------GIDWDFAPVVDVARDPRWGIGERSFSEDPQLVSALAGAMIEGLQ-GAG  164

Query  197  PANPKVVATCKHFAAYDL------EDWNGVVRHSFNAEVSTQDLSEFYLPPFKSCARDAR  250
                 V+AT KHF  +        ++     R         Q L    L PF++ A +A 
Sbjct  165  -----VLATVKHFPGHGHGATDSHKETPTTPR-------PEQRLRTVDLLPFQA-AIEAG  211

Query  251  VDAVMCS---YNALNGVPACADSYLLQTILREHWKWDEPGRWITSDCGAIDDIYNGHNFT  307
            VDAVM +   Y++L+G PA    YLL  +LR+ W +D     + SD  ++  I +     
Sbjct  212  VDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKWGFDGI---VVSDDLSMKGIADHGGP-  267

Query  308  TTPAEAAATALNAGTDLD--CGTVFPKYLGQAADEGLYSNQTLDRALVRL  355
               AEA   AL AG D+         KYL +    G      +D A+ R+
Sbjct  268  ---AEAVRRALEAGVDIALVPEE-RTKYLKKVVKNGKLPMARIDAAVRRV  313



Lambda      K        H        a         alpha
   0.316    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 985137904


Query= TCONS_00021081

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  71.5    2e-15


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 71.5 bits (176),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 46/225 (20%)

Query  39   RTAVITGSNGGIGFEAARQLFQLGLSRLIMGVRSQASGDAAAEKLRAEFRGADIQVWLLD  98
            + A++TG++ GIG   A++L + G  ++++  RS+   +A A++L A   G        D
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGA-KVVLVDRSEEKLEAVAKELGAL--GGKALFIQGD  57

Query  99   MADYGDIDAFARRCRD-LDRIDYVILNAAMQSSIFKRHHTTGH-ELVFQVDYLSTALLCM  156
            + D   + A   +  + L R+D ++ NA +         +    E V  V+      L  
Sbjct  58   VTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTR  117

Query  157  LLASVLKDQSR--------VGAVTKPPVLTVVGSDTMYLSKFQAAGPISPRMDDPTGYDR  208
             +   +   S         V  +   P  +   +     SK    G              
Sbjct  118  AVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSA-----SKAAVIG--------------  158

Query  209  MRQYMDSKLLLMVFVRQLARQVNPDDVVINVCNPGMVAGTGLGKN  253
                         F R LA ++ P  + +N   PG V  T + K 
Sbjct  159  -------------FTRSLALELAPHGIRVNAVAPGGVD-TDMTKE  189



Lambda      K        H        a         alpha
   0.321    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00021082

Length=311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        113     1e-31
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          72.3    3e-16


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 113 bits (284),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 13/142 (9%)

Query  170  LGADEVIDYPKEDLVSVLKEKGKVIDLVVDYAYREEVNLCKASHDFLVDGATFVMVPGGI  229
            LGADEVIDY   D V     +G  +D+V+D    E     +AS   L  G   V + G  
Sbjct  1    LGADEVIDYRTTDFVQATGGEG--VDVVLDTVGGEAF---EASLRVLPGGGRLVTIGGPP  55

Query  230  SSAILRVVSKNSLCPHMLGGGKAKFKAYFAKSNRTA--FQQISEWMAAGKVRTVIDSVFE  287
             SA L + ++        GG   K+   F + N  A   Q++++ +  GK+R VID VF 
Sbjct  56   LSAGLLLPAR------KRGGRGVKYLFLFVRPNLGADILQELADLIEEGKLRPVIDRVFP  109

Query  288  FDDMPRAIERIKSGKTCGKIIV  309
             ++   A   ++SG+  GKI++
Sbjct  110  LEEAAEAHRYLESGRARGKIVL  131


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 72.3 bits (178),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 8/108 (7%)

Query  139  GVGTFAIQFAKAHGCRIIVSCSTA-KIGICKELGADEVIDYPKEDLVSVLKE--KGKVID  195
            GVG  AIQ AKA G ++I    +  K+ + KELGAD VI+  + DLV  +KE   GK +D
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELAKELGADHVINPKETDLVEEIKELTGGKGVD  60

Query  196  LVVDYAYREEVNLCKASHDFLVDGATFVMV---PGGISSAILRVVSKN  240
            +V D          + +   L  G   V+V    G +   +  ++ K 
Sbjct  61   VVFDCVGSPAT--LEQALKLLRPGGRVVVVGLPGGPLPLPLAPLLLKE  106



Lambda      K        H        a         alpha
   0.321    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00026393

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460309 pfam01741, MscL, Large-conductance mechanosensitive ch...  86.4    9e-23


>CDD:460309 pfam01741, MscL, Large-conductance mechanosensitive channel, 
MscL.  
Length=126

 Score = 86.4 bits (215),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 25/111 (23%)

Query  26   WDGFVNFAVRDNVLEVALGLIIAQAFTKVVTSFVSDIILPIVALL----PFLHRNMDEKF  81
               F  FA+R NV+++A+G+II  AF K+VTS V+DII+P++ LL     F         
Sbjct  2    LKEFKEFAMRGNVIDLAVGVIIGAAFGKIVTSLVNDIIMPLIGLLTGGVDF---------  52

Query  82   AVLRRGPHYVEEKGYNTLEQARNDGALVLAYGAFLETVISFVGVSLTLYAI  132
                             L  A+  GA+ + YGAFL  VI+F+ ++  ++ +
Sbjct  53   ------------SDKEALGAAKGAGAVTINYGAFLNAVINFLIIAFVIFLV  91



Lambda      K        H        a         alpha
   0.326    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00021083

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460309 pfam01741, MscL, Large-conductance mechanosensitive ch...  86.7    6e-23


>CDD:460309 pfam01741, MscL, Large-conductance mechanosensitive channel, 
MscL.  
Length=126

 Score = 86.7 bits (216),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 25/111 (23%)

Query  26   WDGFVNFAVRDNVLEVALGLIIAQAFTKVVTSFVSDIILPIVALL----PFLHRNMDEKF  81
               F  FA+R NV+++A+G+II  AF K+VTS V+DII+P++ LL     F         
Sbjct  2    LKEFKEFAMRGNVIDLAVGVIIGAAFGKIVTSLVNDIIMPLIGLLTGGVDF---------  52

Query  82   AVLRRGPHYVEEKGYNTLEQARNDGALVLAYGAFLETVISFVGVSLTLYAI  132
                             L  A+  GA+ + YGAFL  VI+F+ ++  ++ +
Sbjct  53   ------------SDKEALGAAKGAGAVTINYGAFLNAVINFLIIAFVIFLV  91



Lambda      K        H        a         alpha
   0.326    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00021085

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460309 pfam01741, MscL, Large-conductance mechanosensitive ch...  87.1    4e-23


>CDD:460309 pfam01741, MscL, Large-conductance mechanosensitive channel, 
MscL.  
Length=126

 Score = 87.1 bits (217),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 25/111 (23%)

Query  26   WDGFVNFAVRDNVLEVALGLIIAQAFTKVVTSFVSDIILPIVALL----PFLHRNMDEKF  81
               F  FA+R NV+++A+G+II  AF K+VTS V+DII+P++ LL     F         
Sbjct  2    LKEFKEFAMRGNVIDLAVGVIIGAAFGKIVTSLVNDIIMPLIGLLTGGVDF---------  52

Query  82   AVLRRGPHYVEEKGYNTLEQARNDGALVLAYGAFLETVISFVGVSLTLYAI  132
                             L  A+  GA+ + YGAFL  VI+F+ ++  ++ +
Sbjct  53   ------------SDKEALGAAKGAGAVTINYGAFLNAVINFLIIAFVIFLV  91



Lambda      K        H        a         alpha
   0.324    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00021086

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460309 pfam01741, MscL, Large-conductance mechanosensitive ch...  84.4    1e-21


>CDD:460309 pfam01741, MscL, Large-conductance mechanosensitive channel, 
MscL.  
Length=126

 Score = 84.4 bits (210),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 25/111 (23%)

Query  26   WDGFVNFAVRDNVLEVALGLIIAQAFTKVVTSFVSDIILPIVALL----PFLHRNMDEKF  81
               F  FA+R NV+++A+G+II  AF K+VTS V+DII+P++ LL     F         
Sbjct  2    LKEFKEFAMRGNVIDLAVGVIIGAAFGKIVTSLVNDIIMPLIGLLTGGVDF---------  52

Query  82   AVLRRGPHYVEEKGYNTLEQARNDGALVLAYGAFLETVISFVGVSLTLYAI  132
                             L  A+  GA+ + YGAFL  VI+F+ ++  ++ +
Sbjct  53   ------------SDKEALGAAKGAGAVTINYGAFLNAVINFLIIAFVIFLV  91



Lambda      K        H        a         alpha
   0.326    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00021089

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00021087

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460309 pfam01741, MscL, Large-conductance mechanosensitive ch...  87.5    3e-23


>CDD:460309 pfam01741, MscL, Large-conductance mechanosensitive channel, 
MscL.  
Length=126

 Score = 87.5 bits (218),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 25/111 (23%)

Query  26   WDGFVNFAVRDNVLEVALGLIIAQAFTKVVTSFVSDIILPIVALL----PFLHRNMDEKF  81
               F  FA+R NV+++A+G+II  AF K+VTS V+DII+P++ LL     F         
Sbjct  2    LKEFKEFAMRGNVIDLAVGVIIGAAFGKIVTSLVNDIIMPLIGLLTGGVDF---------  52

Query  82   AVLRRGPHYVEEKGYNTLEQARNDGALVLAYGAFLETVISFVGVSLTLYAI  132
                             L  A+  GA+ + YGAFL  VI+F+ ++  ++ +
Sbjct  53   ------------SDKEALGAAKGAGAVTINYGAFLNAVINFLIIAFVIFLV  91



Lambda      K        H        a         alpha
   0.324    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00021084

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460309 pfam01741, MscL, Large-conductance mechanosensitive ch...  84.4    7e-22


>CDD:460309 pfam01741, MscL, Large-conductance mechanosensitive channel, 
MscL.  
Length=126

 Score = 84.4 bits (210),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 25/111 (23%)

Query  26   WDGFVNFAVRDNVLEVALGLIIAQAFTKVVTSFVSDIILPIVALL----PFLHRNMDEKF  81
               F  FA+R NV+++A+G+II  AF K+VTS V+DII+P++ LL     F         
Sbjct  2    LKEFKEFAMRGNVIDLAVGVIIGAAFGKIVTSLVNDIIMPLIGLLTGGVDF---------  52

Query  82   AVLRRGPHYVEEKGYNTLEQARNDGALVLAYGAFLETVISFVGVSLTLYAI  132
                             L  A+  GA+ + YGAFL  VI+F+ ++  ++ +
Sbjct  53   ------------SDKEALGAAKGAGAVTINYGAFLNAVINFLIIAFVIFLV  91



Lambda      K        H        a         alpha
   0.326    0.138    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00021088

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00021090

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460309 pfam01741, MscL, Large-conductance mechanosensitive ch...  88.3    4e-23


>CDD:460309 pfam01741, MscL, Large-conductance mechanosensitive channel, 
MscL.  
Length=126

 Score = 88.3 bits (220),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 25/111 (23%)

Query  26   WDGFVNFAVRDNVLEVALGLIIAQAFTKVVTSFVSDIILPIVALL----PFLHRNMDEKF  81
               F  FA+R NV+++A+G+II  AF K+VTS V+DII+P++ LL     F         
Sbjct  2    LKEFKEFAMRGNVIDLAVGVIIGAAFGKIVTSLVNDIIMPLIGLLTGGVDF---------  52

Query  82   AVLRRGPHYVEEKGYNTLEQARNDGALVLAYGAFLETVISFVGVSLTLYAI  132
                             L  A+  GA+ + YGAFL  VI+F+ ++  ++ +
Sbjct  53   ------------SDKEALGAAKGAGAVTINYGAFLNAVINFLIIAFVIFLV  91



Lambda      K        H        a         alpha
   0.323    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00021092

Length=708


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906995850


Query= TCONS_00021093

Length=208


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00021094

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00021095

Length=717


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906559696


Query= TCONS_00026394

Length=339


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00021098

Length=544


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00021097

Length=544


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00021099

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395219 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarbox...  302     2e-99


>CDD:395219 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved 
domain.  
Length=373

 Score = 302 bits (776),  Expect = 2e-99, Method: Composition-based stats.
 Identities = 144/407 (35%), Positives = 211/407 (52%), Gaps = 45/407 (11%)

Query  35   PGYLRPLIPENPPEEPEQWSQIQADIETKIKPGLTHWQSPNFMAFFPAGVTYPSILGEMY  94
            PGYL+PL+P   P  PE   QI  DI   + PG+T W SP+F A+ P G +YPS+LG+M 
Sbjct  1    PGYLKPLLPLAAPIIPEPELQIDGDIRRNLMPGVTTWHSPHFHAYMPTGNSYPSLLGDML  60

Query  95   SAAFTAPAFNWLCSPACTELETIVMDWMAKALGLPECFLSSSENKGGGVIQVSASDAVAT  154
            + A     F W  SPACTELE +VM+W+ + LGLP  FL      GGGV+Q  +S++   
Sbjct  61   TDAINCNGFTWESSPACTELENVVMNWLGEMLGLPAEFLGQE---GGGVLQPGSSESNLL  117

Query  155  VMIAARERRVREQALAEGLKDGTVEYEDRVMELRP-----RLVALGSNQAHSSTAKGALL  209
             ++AAR + ++               +             +LVA  S+QAHSS  K AL 
Sbjct  118  ALLAARTKWIK-------------RMKAAGKPADSSGILAKLVAYTSDQAHSSIEKAALY  164

Query  210  AGTRYRSVTARLEDNMEMTGPRLREVLEQCDKDGLTPYYITLGMGTTNTCALDRFAEIKA  269
             G + R +    +DN +M G  L + +E+  ++GL P+++   +GTT + A D   E+  
Sbjct  165  GGVKLREI--PSDDNGKMRGMDLEKAIEEDKENGLIPFFVVATLGTTGSGAFDDLQELGD  222

Query  270  VLKEKPHWQRIWVHIDAAYAGAALVADEWQYIAKDFA------EGVDSFNMNMHKWLLVN  323
            +  +      +W+H+DAAY G+A       +I  +F       E  DS   N HKW+LV 
Sbjct  223  ICAK----HNLWLHVDAAYGGSA-------FICPEFRHWLFGIERADSITFNPHKWMLVL  271

Query  324  FDASCLYVRNRFDLTDALDITPAYLRNPYSETGRVIDYRNWSISLGRRFRALKIWFVMRS  383
             D S ++V+++  L  A    P YL +  S      D  +  I L RRFR LK+WFV+RS
Sbjct  272  LDCSAVWVKDKEALQQAFQFNPLYLGHTDSAY----DTGHKQIPLSRRFRILKLWFVIRS  327

Query  384  YGLSGMKAYIRKTIGLGNIFADLVRSRSDLFEIITKPAFCLTVFRIK  430
             G+ G++  IR+ + L      L+R     FEI  +    L  FR+K
Sbjct  328  LGVEGLQNQIRRHVELAQYLEALIRKDGR-FEICAEVGLGLVCFRLK  373



Lambda      K        H        a         alpha
   0.320    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 637421786


Query= TCONS_00026395

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395219 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarbox...  204     1e-63


>CDD:395219 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved 
domain.  
Length=373

 Score = 204 bits (521),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 108/303 (36%), Positives = 158/303 (52%), Gaps = 40/303 (13%)

Query  35   PGYLRPLIPENPPEEPEQWSQIQADIETKIKPGLTHWQSPNFMAFFPAGVTYPSILGEMY  94
            PGYL+PL+P   P  PE   QI  DI   + PG+T W SP+F A+ P G +YPS+LG+M 
Sbjct  1    PGYLKPLLPLAAPIIPEPELQIDGDIRRNLMPGVTTWHSPHFHAYMPTGNSYPSLLGDML  60

Query  95   SAAFTAPAFNWLCSPACTELETIVMDWMAKALGLPECFLSSSENKGGGVIQVSASDAVAT  154
            + A     F W  SPACTELE +VM+W+ + LGLP  FL      GGGV+Q  +S++   
Sbjct  61   TDAINCNGFTWESSPACTELENVVMNWLGEMLGLPAEFLGQE---GGGVLQPGSSESNLL  117

Query  155  VMIAARERRVREQALAEGLKDGTVEYEDRVMELRP-----RLVALGSNQAHSSTAKGALL  209
             ++AAR + ++               +             +LVA  S+QAHSS  K AL 
Sbjct  118  ALLAARTKWIK-------------RMKAAGKPADSSGILAKLVAYTSDQAHSSIEKAALY  164

Query  210  AGTRYRSVTARLEDNMEMTGPRLREVLEQCDKDGLTPYYITLGMGTTNTCALDRFAEIKA  269
             G + R +    +DN +M G  L + +E+  ++GL P+++   +GTT + A D   E+  
Sbjct  165  GGVKLREI--PSDDNGKMRGMDLEKAIEEDKENGLIPFFVVATLGTTGSGAFDDLQELGD  222

Query  270  VLKEKPHWQRIWVHIDAAYAGAALVADEWQYIAKDFA------EGVDSFNMNMHKWLLVN  323
            +  +      +W+H+DAAY G+A       +I  +F       E  DS   N HKW+LV 
Sbjct  223  ICAK----HNLWLHVDAAYGGSA-------FICPEFRHWLFGIERADSITFNPHKWMLVL  271

Query  324  FDA  326
             D 
Sbjct  272  LDC  274



Lambda      K        H        a         alpha
   0.320    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00026396

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395219 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarbox...  303     1e-99


>CDD:395219 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved 
domain.  
Length=373

 Score = 303 bits (778),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 144/407 (35%), Positives = 211/407 (52%), Gaps = 45/407 (11%)

Query  42   PGYLRPLIPENPPEEPEQWSQIQADIETKIKPGLTHWQSPNFMAFFPAGVTYPSILGEMY  101
            PGYL+PL+P   P  PE   QI  DI   + PG+T W SP+F A+ P G +YPS+LG+M 
Sbjct  1    PGYLKPLLPLAAPIIPEPELQIDGDIRRNLMPGVTTWHSPHFHAYMPTGNSYPSLLGDML  60

Query  102  SAAFTAPAFNWLCSPACTELETIVMDWMAKALGLPECFLSSSENKGGGVIQVSASDAVAT  161
            + A     F W  SPACTELE +VM+W+ + LGLP  FL      GGGV+Q  +S++   
Sbjct  61   TDAINCNGFTWESSPACTELENVVMNWLGEMLGLPAEFLGQE---GGGVLQPGSSESNLL  117

Query  162  VMIAARERRVREQALAEGLKDGTVEYEDRVMELRP-----RLVALGSNQAHSSTAKGALL  216
             ++AAR + ++               +             +LVA  S+QAHSS  K AL 
Sbjct  118  ALLAARTKWIK-------------RMKAAGKPADSSGILAKLVAYTSDQAHSSIEKAALY  164

Query  217  AGTRYRSVTARLEDNMEMTGPRLREVLEQCDKDGLTPYYITLGMGTTNTCALDRFAEIKA  276
             G + R +    +DN +M G  L + +E+  ++GL P+++   +GTT + A D   E+  
Sbjct  165  GGVKLREI--PSDDNGKMRGMDLEKAIEEDKENGLIPFFVVATLGTTGSGAFDDLQELGD  222

Query  277  VLKEKPHWQRIWVHIDAAYAGAALVADEWQYIAKDFA------EGVDSFNMNMHKWLLVN  330
            +  +      +W+H+DAAY G+A       +I  +F       E  DS   N HKW+LV 
Sbjct  223  ICAK----HNLWLHVDAAYGGSA-------FICPEFRHWLFGIERADSITFNPHKWMLVL  271

Query  331  FDASCLYVRNRFDLTDALDITPAYLRNPYSETGRVIDYRNWSISLGRRFRALKIWFVMRS  390
             D S ++V+++  L  A    P YL +  S      D  +  I L RRFR LK+WFV+RS
Sbjct  272  LDCSAVWVKDKEALQQAFQFNPLYLGHTDSAY----DTGHKQIPLSRRFRILKLWFVIRS  327

Query  391  YGLSGMKAYIRKTIGLGNIFADLVRSRSDLFEIITKPAFCLTVFRIK  437
             G+ G++  IR+ + L      L+R     FEI  +    L  FR+K
Sbjct  328  LGVEGLQNQIRRHVELAQYLEALIRKDGR-FEICAEVGLGLVCFRLK  373



Lambda      K        H        a         alpha
   0.321    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 648020248


Query= TCONS_00026397

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395219 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarbox...  302     2e-99


>CDD:395219 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved 
domain.  
Length=373

 Score = 302 bits (776),  Expect = 2e-99, Method: Composition-based stats.
 Identities = 144/407 (35%), Positives = 211/407 (52%), Gaps = 45/407 (11%)

Query  35   PGYLRPLIPENPPEEPEQWSQIQADIETKIKPGLTHWQSPNFMAFFPAGVTYPSILGEMY  94
            PGYL+PL+P   P  PE   QI  DI   + PG+T W SP+F A+ P G +YPS+LG+M 
Sbjct  1    PGYLKPLLPLAAPIIPEPELQIDGDIRRNLMPGVTTWHSPHFHAYMPTGNSYPSLLGDML  60

Query  95   SAAFTAPAFNWLCSPACTELETIVMDWMAKALGLPECFLSSSENKGGGVIQVSASDAVAT  154
            + A     F W  SPACTELE +VM+W+ + LGLP  FL      GGGV+Q  +S++   
Sbjct  61   TDAINCNGFTWESSPACTELENVVMNWLGEMLGLPAEFLGQE---GGGVLQPGSSESNLL  117

Query  155  VMIAARERRVREQALAEGLKDGTVEYEDRVMELRP-----RLVALGSNQAHSSTAKGALL  209
             ++AAR + ++               +             +LVA  S+QAHSS  K AL 
Sbjct  118  ALLAARTKWIK-------------RMKAAGKPADSSGILAKLVAYTSDQAHSSIEKAALY  164

Query  210  AGTRYRSVTARLEDNMEMTGPRLREVLEQCDKDGLTPYYITLGMGTTNTCALDRFAEIKA  269
             G + R +    +DN +M G  L + +E+  ++GL P+++   +GTT + A D   E+  
Sbjct  165  GGVKLREI--PSDDNGKMRGMDLEKAIEEDKENGLIPFFVVATLGTTGSGAFDDLQELGD  222

Query  270  VLKEKPHWQRIWVHIDAAYAGAALVADEWQYIAKDFA------EGVDSFNMNMHKWLLVN  323
            +  +      +W+H+DAAY G+A       +I  +F       E  DS   N HKW+LV 
Sbjct  223  ICAK----HNLWLHVDAAYGGSA-------FICPEFRHWLFGIERADSITFNPHKWMLVL  271

Query  324  FDASCLYVRNRFDLTDALDITPAYLRNPYSETGRVIDYRNWSISLGRRFRALKIWFVMRS  383
             D S ++V+++  L  A    P YL +  S      D  +  I L RRFR LK+WFV+RS
Sbjct  272  LDCSAVWVKDKEALQQAFQFNPLYLGHTDSAY----DTGHKQIPLSRRFRILKLWFVIRS  327

Query  384  YGLSGMKAYIRKTIGLGNIFADLVRSRSDLFEIITKPAFCLTVFRIK  430
             G+ G++  IR+ + L      L+R     FEI  +    L  FR+K
Sbjct  328  LGVEGLQNQIRRHVELAQYLEALIRKDGR-FEICAEVGLGLVCFRLK  373



Lambda      K        H        a         alpha
   0.320    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0686    0.140     1.90     42.6     43.6 

Effective search space used: 637421786


Query= TCONS_00021102

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  78.5    2e-17
CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogen...  70.5    2e-14
CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding                 63.0    2e-12


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 78.5 bits (194),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 103/270 (38%), Gaps = 46/270 (17%)

Query  9    VLVTGATGFIGAHVVDSLLDRGITVRGATRSLSKGEQMRAARPDHASRLEFVQIEDFSKL  68
            +LVTGATGFIG+H+V  LL++G  V G  R          AR     R     + D   L
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDR---LTSASNTARLADL-RFVEGDLTDRDAL  56

Query  69   GGFDHVMEGVDAVIHVASPFTYNTTNNEQELILPA-INGVKSILAASAKPGSTVKRVVLT  127
                      DAVIH+A+      +  + E  + A + G  ++L A+ K G  VKR +  
Sbjct  57   EKL-LADVRPDAVIHLAAVGGVGASIEDPEDFIEANVLGTLNLLEAARKAG--VKRFLFA  113

Query  128  SS---FASVIDISKNPGPDFTYTGAHWNPITYEESVDPATSAVVAYRGSKKFAELEAWNF  184
            SS   +    +I   P  + T TG    P +              Y  +K   E     +
Sbjct  114  SSSEVYGDGAEI---PQEETTLTG-PLAPNS-------------PYAAAKLAGEWLVLAY  156

Query  185  MDREGPPLDLVTLCPPMVFGPIVHPV-------ASIAQLNESNAV-LWSVAAGADPLPAA  236
                G  L  V L    V+GP  +         A I ++ E   + LW            
Sbjct  157  AAAYG--LRAVILRLFNVYGPGDNEGFVSRVIPALIRRILEGKPILLWG------DGTQR  208

Query  237  RVSAWIDVRDLAEAHVQALLTPEAGGKRYV  266
            R   ++ V D+A A + AL      G+ Y 
Sbjct  209  R--DFLYVDDVARAILLALEHGAVKGEIYN  236


>CDD:366449 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase 
family.  The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene 
isomerase (3 beta-HSD) catalyzes the oxidation 
and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene 
steroid precursors into the corresponding 
4-ene-ketosteroids necessary for the formation of all classes 
of steroid hormones.
Length=279

 Score = 70.5 bits (173),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 115/296 (39%), Gaps = 73/296 (25%)

Query  10   LVTGATGFIGAHVVDSLLDRGITVRGATRSLSKGEQMRAARPDHASRLEFVQIEDFSKLG  69
            +VTG  GF+G H++  L+  G           + +++R      +  L    +EDFSK  
Sbjct  1    VVTGGGGFLGRHIIKLLVREG-----------ELKEVRVFDLRESPEL----LEDFSKSN  45

Query  70   -------------GFDHVMEGVDAVIHVASPFTYNTTNNEQELILPAINGVKSILAASAK  116
                           D+ +EGVD VIH AS           E++   + G +++L A  K
Sbjct  46   VIKYIQGDVTDKDDLDNALEGVDVVIHTASAVDVFGKYTFDEIMKVNVKGTQNVLEACVK  105

Query  117  PGSTVKRVVLTSSFASVIDISKNPGPDFTYTGAHWNPI------TYEESVDPATSAVVAY  170
             G  V+ +V TSS A V+      GP+      +  PI      T  ES         AY
Sbjct  106  AG--VRVLVYTSS-AEVV------GPNS-----YGQPILNGDEETPYESTHQD-----AY  146

Query  171  RGSKKFAE---LEAWNFMDREGPPLDLVTLCPPMVFGP--IVHPVASIAQLNESNAVLWS  225
              SK  AE   L+A     + G  L    L P  ++G    +  V  I  L +     + 
Sbjct  147  PRSKAIAEKLVLKANGRPLKNGGRLYTCALRPAGIYGEGDRLL-VPFIVNLAKLGLAKFK  205

Query  226  VAAGADPLPAARVSAWIDVRDLAEAHV---QALLTPEAGGKRYVPASGEP-FCYEY  277
                 +      +S  + V ++A AH+   +AL  P    K+    +G   F Y+ 
Sbjct  206  TGDDNN------LSDRVYVGNVAWAHILAARALQDP----KKMSSIAGNAYFIYDD  251


>CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding.  
Length=183

 Score = 63.0 bits (154),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 48/132 (36%), Gaps = 20/132 (15%)

Query  13   GATGFIGAHVVDSLLDRGITVRGATRSLSKGEQMRAARPDHASRLEFVQIEDFSKLGGFD  72
            GATG IG  +V  LL RG  V    R+  K   +          +E V   D        
Sbjct  1    GATGKIGRLLVKQLLARGHEVTALVRNPEKLADLED-----HPGVEVVDG-DVLDPDDLA  54

Query  73   HVMEGVDAVIHVASPFTYNTTNNEQELILPAINGVKSILAASAKPGSTVKRVVLTSSFAS  132
              + G DAVI             ++        G K+I+ A+   G  VKR VL SS   
Sbjct  55   EALAGQDAVI-----SALGGGGTDET-------GAKNIIDAAKAAG--VKRFVLVSSLGV  100

Query  133  VIDISKNPGPDF  144
              ++    GP  
Sbjct  101  GDEVPGPFGPWN  112



Lambda      K        H        a         alpha
   0.316    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00026398

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.611    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00026399

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.611    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00026400

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459708 pfam00199, Catalase, Catalase                              666     0.0  


>CDD:459708 pfam00199, Catalase, Catalase.  
Length=383

 Score = 666 bits (1720),  Expect = 0.0, Method: Composition-based stats.
 Identities = 204/369 (55%), Positives = 261/369 (71%), Gaps = 6/369 (2%)

Query  56   TSDVGGPIED-QNSLSAGERGPTLLEDFIFRQKIQRFDHERVPERAVHARGAGAHGVFTS  114
            T+  G P+ D QNSL+AG RGP LL+DF   +K+  FD ER+PER VHA+GAGAHG F  
Sbjct  1    TTSNGAPVPDNQNSLTAGPRGPLLLQDFHLIEKLAHFDRERIPERVVHAKGAGAHGYFEV  60

Query  115  YGDFSNITAASFLAKEGKQTPVFVRFSTVAGSRGSSDLARDVHGFATRFYTDEGNFDIVG  174
              D S+ T A FL++ GK+TPVFVRFSTVAG RGS+D ARD  GFA +FYT+EGN+D+VG
Sbjct  61   THDISDYTKAKFLSEVGKKTPVFVRFSTVAGERGSADTARDPRGFAVKFYTEEGNWDLVG  120

Query  175  NNIPVFFIQDAILFPDLIHAVKPRGDNEIPQAATAHDSAWDFFSQQPSTMHTLLWAMSGH  234
            NN PVFFI+D I FPD IH+ K      +P  A      WDF+S  P ++H + W  S  
Sbjct  121  NNTPVFFIRDPIKFPDFIHSQKRDPQTNLPDPAMF----WDFWSLNPESLHQVTWLFSDR  176

Query  235  GIPRSFRHVDGFGVHTFRFVTDDGASKLVKFHWKSLQGKASMVWEEAQQTSGKNPDFMRQ  294
            GIPRS+RH++GFGVHTF+ V  DG    VKFH+K+ QG  ++ WEEAQ+ +GK+PD+  +
Sbjct  177  GIPRSYRHMNGFGVHTFKLVNADGERVYVKFHFKTDQGIKNLTWEEAQKLAGKDPDYHTR  236

Query  295  DLHDAIEAGRYPEWELGVQIMDEEDQLRFGFDLLDPTKIVPEEFVPITKLGKMQLNRNPR  354
            DL++AIE G YP W L VQ+M EED  +F F+  D TK+ P +  P+ ++GKM LNRNP 
Sbjct  237  DLYEAIERGDYPSWTLYVQVMTEEDAEKFRFNPFDLTKVWPHKDYPLIEVGKMVLNRNPD  296

Query  355  NYFAETEQVMFQPGHIVRGVDFTEDPLLQGRLFSYLDTQLNRHGGPNFEQLPINQPRVPV  414
            NYFAE EQ  F P ++V G++ + DP+LQGRLFSY DTQ  R  GPN++QLP+N+P  PV
Sbjct  297  NYFAEVEQAAFSPSNLVPGIEPSPDPMLQGRLFSYPDTQRYRL-GPNYQQLPVNRPPCPV  355

Query  415  HNNNRDGAG  423
            HN  RDGA 
Sbjct  356  HNYQRDGAM  364



Lambda      K        H        a         alpha
   0.320    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 575139000


Query= TCONS_00021103

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436209 pfam18011, Catalase_C, C-terminal domain found in long...  190     1e-61
CDD:461967 pfam06628, Catalase-rel, Catalase-related immune-respo...  90.1    8e-24


>CDD:436209 pfam18011, Catalase_C, C-terminal domain found in long catalases. 
 This domain is found at the C-terminus of a variety of 
large catalase enzymes from bacteria. Structurally it is related 
to class I glutamine amidotransferase domains. The precise 
molecular function of this domain is uncertain.
Length=150

 Score = 190 bits (486),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 84/159 (53%), Positives = 103/159 (65%), Gaps = 9/159 (6%)

Query  143  DGLKVGVLGSVQHPGSVEGASTLRDRLKDDGVDVVLVAERLADGVDQTYSTSDAIQFDAV  202
            DGL VG+L S     S+  A  L   L   GVDV++VAE LADGV++TYST+DA  FDA+
Sbjct  1    DGLTVGILASNDSDASLAQAKALAAALAAAGVDVLVVAETLADGVNRTYSTADATLFDAI  60

Query  203  VVAAGAESLFAASSFTGGSANSASGASSLYPTGRPLQILIDGFRFGKTVGALGSGTAALR  262
            VVA GAE LF+A +    S         LYP GRPLQIL+D +R GK +GALGSG++AL 
Sbjct  61   VVADGAEGLFSAKATAASS---------LYPAGRPLQILLDAYRHGKPIGALGSGSSALS  111

Query  263  NAGIATSRDGVYVAQSVTDDFANDLKEGLRTFKFLDRFP  301
             AGI+    GVYV  S  D    D++EGL TF+F DRFP
Sbjct  112  GAGISAEGPGVYVGDSADDALVEDVEEGLATFRFWDRFP  150


>CDD:461967 pfam06628, Catalase-rel, Catalase-related immune-responsive. 
 This family represents a small conserved region within catalase 
enzymes (EC:1.11.1.6). All members also contain the Catalase 
family, pfam00199 domain. Catalase decomposes hydrogen 
peroxide into water and oxygen, serving to protect cells from 
its toxic effects. This domain carries the immune-responsive 
amphipathic octa-peptide that is recognized by T cells.
Length=65

 Score = 90.1 bits (225),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 24/65 (37%), Positives = 39/65 (60%), Gaps = 0/65 (0%)

Query  48   SSSFEDVWSQPRLFYNSLVPAEKQFVIDAIRFENANVKSPVVKNNVIIQLNRIDNDLARR  107
            S  F+D +SQ  LFY S+   E+Q ++D I FE + V  P ++  ++    ++D DL +R
Sbjct  1    SIDFDDHFSQAGLFYRSMSEEERQRLVDNIAFELSKVTDPEIQERMVAHFYKVDPDLGQR  60

Query  108  VARAI  112
            VA A+
Sbjct  61   VAEAL  65



Lambda      K        H        a         alpha
   0.316    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00026401

Length=1072
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460999 pfam03636, Glyco_hydro_65N, Glycosyl hydrolase family ...  178     2e-51
CDD:281612 pfam03632, Glyco_hydro_65m, Glycosyl hydrolase family ...  80.1    3e-16


>CDD:460999 pfam03636, Glyco_hydro_65N, Glycosyl hydrolase family 65, N-terminal 
domain.  This family of glycosyl hydrolases contains 
vacuolar acid trehalase and maltose phosphorylase.Maltose phosphorylase 
(MP) is a dimeric enzyme that catalyzes the conversion 
of maltose and inorganic phosphate into beta-D-glucose-1-phosphate 
and glucose. This domain is believed to be essential 
for catalytic activity although its precise function 
remains unknown.
Length=237

 Score = 178 bits (455),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 110/269 (41%), Gaps = 44/269 (16%)

Query  74   DQGHYQSRGSIANGYLGINVASVGPFFELDVPVSGDVINGWPLYSRRQTFATIAGFFDYQ  133
            D G  +S  S+ NGYLG   A                      YS       IAG +D  
Sbjct  9    DLGLRESLFSLGNGYLGTRGAFEEG------------------YSGHYPGTYIAGVYDRL  50

Query  134  PTTNGSNFPWLNQYGGESVISGIPHWSGLILDLGDGNYLDATVDNKTITDFRSTYDFKSG  193
                 + +P   +   E V    P+W GL L + DG   D  +D   I D+R T D + G
Sbjct  51   VGEWKNGYP---EEFEELV--NAPNWLGLRLRI-DGEPFD--LDTGEILDYRRTLDMREG  102

Query  194  VLSWSYTWTPKCNKGSFNITYRLFAHKLHVNQAVVDMEITPSQGS-EATVVNVIDGFSAV  252
            VL+ S+TW       +  + +  F      + A +  EITP   S E TV + +DG    
Sbjct  103  VLTRSFTWRSP-AGRTVRVEFERFVSMADPHLAAIRYEITPLNFSGEITVRSGLDGDVTN  161

Query  253  RTDFVES---GQDNGALFSAVRPWGISNVTAYVYTNLTASAGVDLTSRALVNDKPYVHSN  309
              DF +      D   L +  RP GI+   A             +  R  ++ KP   ++
Sbjct  162  LGDFHDPRVAEADGIWLVARTRPSGITVAMA-------------MRHRVDLDGKPLEEAD  208

Query  310  ESSIAQAVDVKFRANETVRITKFVGAASS  338
            E +IAQ   V+ +A ETV + K+V  A+S
Sbjct  209  ERTIAQTFTVELKAGETVTLEKYVAVATS  237


>CDD:281612 pfam03632, Glyco_hydro_65m, Glycosyl hydrolase family 65 central 
catalytic domain.  This family of glycosyl hydrolases contains 
vacuolar acid trehalase and maltose phosphorylase.Maltose 
phosphorylase (MP) is a dimeric enzyme that catalyzes the 
conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate 
and glucose. The central domain is the 
catalytic domain, which binds a phosphate ion that is proximal 
the the highly conserved Glu. The arrangement of the phosphate 
and the glutamate is thought to cause nucleophilic attack 
on the anomeric carbon atom. The catalytic domain also forms 
the majority of the dimerization interface.
Length=387

 Score = 80.1 bits (198),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 71/330 (22%), Positives = 120/330 (36%), Gaps = 77/330 (23%)

Query  407  NTYYLLQNTVGKNAIKAVSGAPVNVDSISVGGLTSDSYAGLVFWDADVWMQPGLVASHPE  466
            N ++LLQ     +A   + GA          GLT + Y G VFWD + ++ P  + + PE
Sbjct  3    NLFHLLQTYAPADARLDI-GAK---------GLTGEGYRGHVFWDTEAFVLPYYLLTEPE  52

Query  467  AAQRVTNYRTKLYPQALENINTAFTSSKNRTTFSPSAAIYPWTSGRFGN-CT---GTGPC  522
             A+ +  YR    P A EN                  A+YPW +G  G  C+        
Sbjct  53   VARNLLRYRYNRLPAAREN-----AKELGL-----KGALYPWQTGLDGEECSQQLHLNIR  102

Query  523  WDY--------QYHLNGDIGLSLMYQWIASGDTKTFREQHFPIYDSVATMYSNIVQRNGS  574
                       + H+NG I  ++     A+GD     +    +    A  +++    +  
Sbjct  103  TGEWEPDASFAEIHVNGAIAYAVWQYTQATGDESFLADCGLELLVETARFWASRAHFDND  162

Query  575  S--WTLTNMTDPDEYANHIDAGGFTMPLISETLSYANSFRKQFGLEQN---------ETW  623
               + +  +T PDEY N++D   +T  + +  L YA    ++               E W
Sbjct  163  HGRYHIDGVTGPDEYHNNVDNNAYTNLMAAWNLEYALEALERLPETAEGLGVDEEELEKW  222

Query  624  TEISENVLL--IREDGV------------------------------TLEYTTMNGTAVV  651
             +ISE + L    E GV                                E  ++  + V+
Sbjct  223  RDISEKMYLPFDEELGVIAQHDGFLDLAELDFAAYRALYGDITPLLLKAEGDSVLRSQVI  282

Query  652  KQADIVLVTYPLVYDNNYTAQHALNDLDYY  681
            KQAD++++ Y   Y   +       + D+Y
Sbjct  283  KQADVLMLMYLFGY--RFDEDQIRRNFDFY  310



Lambda      K        H        a         alpha
   0.315    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1381894976


Query= TCONS_00021104

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459708 pfam00199, Catalase, Catalase                              252     4e-85


>CDD:459708 pfam00199, Catalase, Catalase.  
Length=383

 Score = 252 bits (647),  Expect = 4e-85, Method: Composition-based stats.
 Identities = 74/140 (53%), Positives = 99/140 (71%), Gaps = 0/140 (0%)

Query  1    MHTLLWAMSGHGIPRSFRHVDGFGVHTFRFVTDDGASKLVKFHWKSLQGKASMVWEEAQQ  60
            +H + W  S  GIPRS+RH++GFGVHTF+ V  DG    VKFH+K+ QG  ++ WEEAQ+
Sbjct  166  LHQVTWLFSDRGIPRSYRHMNGFGVHTFKLVNADGERVYVKFHFKTDQGIKNLTWEEAQK  225

Query  61   TSGKNPDFMRQDLHDAIEAGRYPEWELGVQIMDEEDQLRFGFDLLDPTKIVPEEFVPITK  120
             +GK+PD+  +DL++AIE G YP W L VQ+M EED  +F F+  D TK+ P +  P+ +
Sbjct  226  LAGKDPDYHTRDLYEAIERGDYPSWTLYVQVMTEEDAEKFRFNPFDLTKVWPHKDYPLIE  285

Query  121  LGKMQLNRNPRNYFAETEQV  140
            +GKM LNRNP NYFAE EQ 
Sbjct  286  VGKMVLNRNPDNYFAEVEQA  305



Lambda      K        H        a         alpha
   0.321    0.136    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00026402

Length=1072
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460999 pfam03636, Glyco_hydro_65N, Glycosyl hydrolase family ...  178     2e-51
CDD:281612 pfam03632, Glyco_hydro_65m, Glycosyl hydrolase family ...  80.1    3e-16


>CDD:460999 pfam03636, Glyco_hydro_65N, Glycosyl hydrolase family 65, N-terminal 
domain.  This family of glycosyl hydrolases contains 
vacuolar acid trehalase and maltose phosphorylase.Maltose phosphorylase 
(MP) is a dimeric enzyme that catalyzes the conversion 
of maltose and inorganic phosphate into beta-D-glucose-1-phosphate 
and glucose. This domain is believed to be essential 
for catalytic activity although its precise function 
remains unknown.
Length=237

 Score = 178 bits (455),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 110/269 (41%), Gaps = 44/269 (16%)

Query  74   DQGHYQSRGSIANGYLGINVASVGPFFELDVPVSGDVINGWPLYSRRQTFATIAGFFDYQ  133
            D G  +S  S+ NGYLG   A                      YS       IAG +D  
Sbjct  9    DLGLRESLFSLGNGYLGTRGAFEEG------------------YSGHYPGTYIAGVYDRL  50

Query  134  PTTNGSNFPWLNQYGGESVISGIPHWSGLILDLGDGNYLDATVDNKTITDFRSTYDFKSG  193
                 + +P   +   E V    P+W GL L + DG   D  +D   I D+R T D + G
Sbjct  51   VGEWKNGYP---EEFEELV--NAPNWLGLRLRI-DGEPFD--LDTGEILDYRRTLDMREG  102

Query  194  VLSWSYTWTPKCNKGSFNITYRLFAHKLHVNQAVVDMEITPSQGS-EATVVNVIDGFSAV  252
            VL+ S+TW       +  + +  F      + A +  EITP   S E TV + +DG    
Sbjct  103  VLTRSFTWRSP-AGRTVRVEFERFVSMADPHLAAIRYEITPLNFSGEITVRSGLDGDVTN  161

Query  253  RTDFVES---GQDNGALFSAVRPWGISNVTAYVYTNLTASAGVDLTSRALVNDKPYVHSN  309
              DF +      D   L +  RP GI+   A             +  R  ++ KP   ++
Sbjct  162  LGDFHDPRVAEADGIWLVARTRPSGITVAMA-------------MRHRVDLDGKPLEEAD  208

Query  310  ESSIAQAVDVKFRANETVRITKFVGAASS  338
            E +IAQ   V+ +A ETV + K+V  A+S
Sbjct  209  ERTIAQTFTVELKAGETVTLEKYVAVATS  237


>CDD:281612 pfam03632, Glyco_hydro_65m, Glycosyl hydrolase family 65 central 
catalytic domain.  This family of glycosyl hydrolases contains 
vacuolar acid trehalase and maltose phosphorylase.Maltose 
phosphorylase (MP) is a dimeric enzyme that catalyzes the 
conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate 
and glucose. The central domain is the 
catalytic domain, which binds a phosphate ion that is proximal 
the the highly conserved Glu. The arrangement of the phosphate 
and the glutamate is thought to cause nucleophilic attack 
on the anomeric carbon atom. The catalytic domain also forms 
the majority of the dimerization interface.
Length=387

 Score = 80.1 bits (198),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 71/330 (22%), Positives = 120/330 (36%), Gaps = 77/330 (23%)

Query  407  NTYYLLQNTVGKNAIKAVSGAPVNVDSISVGGLTSDSYAGLVFWDADVWMQPGLVASHPE  466
            N ++LLQ     +A   + GA          GLT + Y G VFWD + ++ P  + + PE
Sbjct  3    NLFHLLQTYAPADARLDI-GAK---------GLTGEGYRGHVFWDTEAFVLPYYLLTEPE  52

Query  467  AAQRVTNYRTKLYPQALENINTAFTSSKNRTTFSPSAAIYPWTSGRFGN-CT---GTGPC  522
             A+ +  YR    P A EN                  A+YPW +G  G  C+        
Sbjct  53   VARNLLRYRYNRLPAAREN-----AKELGL-----KGALYPWQTGLDGEECSQQLHLNIR  102

Query  523  WDY--------QYHLNGDIGLSLMYQWIASGDTKTFREQHFPIYDSVATMYSNIVQRNGS  574
                       + H+NG I  ++     A+GD     +    +    A  +++    +  
Sbjct  103  TGEWEPDASFAEIHVNGAIAYAVWQYTQATGDESFLADCGLELLVETARFWASRAHFDND  162

Query  575  S--WTLTNMTDPDEYANHIDAGGFTMPLISETLSYANSFRKQFGLEQN---------ETW  623
               + +  +T PDEY N++D   +T  + +  L YA    ++               E W
Sbjct  163  HGRYHIDGVTGPDEYHNNVDNNAYTNLMAAWNLEYALEALERLPETAEGLGVDEEELEKW  222

Query  624  TEISENVLL--IREDGV------------------------------TLEYTTMNGTAVV  651
             +ISE + L    E GV                                E  ++  + V+
Sbjct  223  RDISEKMYLPFDEELGVIAQHDGFLDLAELDFAAYRALYGDITPLLLKAEGDSVLRSQVI  282

Query  652  KQADIVLVTYPLVYDNNYTAQHALNDLDYY  681
            KQAD++++ Y   Y   +       + D+Y
Sbjct  283  KQADVLMLMYLFGY--RFDEDQIRRNFDFY  310



Lambda      K        H        a         alpha
   0.315    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1381894976


Query= TCONS_00021105

Length=728
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459708 pfam00199, Catalase, Catalase                              678     0.0  
CDD:436209 pfam18011, Catalase_C, C-terminal domain found in long...  202     8e-62
CDD:461967 pfam06628, Catalase-rel, Catalase-related immune-respo...  89.0    2e-22


>CDD:459708 pfam00199, Catalase, Catalase.  
Length=383

 Score = 678 bits (1753),  Expect = 0.0, Method: Composition-based stats.
 Identities = 207/383 (54%), Positives = 265/383 (69%), Gaps = 7/383 (2%)

Query  56   TSDVGGPIED-QNSLSAGERGPTLLEDFIFRQKIQRFDHERVPERAVHARGAGAHGVFTS  114
            T+  G P+ D QNSL+AG RGP LL+DF   +K+  FD ER+PER VHA+GAGAHG F  
Sbjct  1    TTSNGAPVPDNQNSLTAGPRGPLLLQDFHLIEKLAHFDRERIPERVVHAKGAGAHGYFEV  60

Query  115  YGDFSNITAASFLAKEGKQTPVFVRFSTVAGSRGSSDLARDVHGFATRFYTDEGNFDIVG  174
              D S+ T A FL++ GK+TPVFVRFSTVAG RGS+D ARD  GFA +FYT+EGN+D+VG
Sbjct  61   THDISDYTKAKFLSEVGKKTPVFVRFSTVAGERGSADTARDPRGFAVKFYTEEGNWDLVG  120

Query  175  NNIPVFFIQDAILFPDLIHAVKPRGDNEIPQAATAHDSAWDFFSQQPSTMHTLLWAMSGH  234
            NN PVFFI+D I FPD IH+ K      +P  A      WDF+S  P ++H + W  S  
Sbjct  121  NNTPVFFIRDPIKFPDFIHSQKRDPQTNLPDPAMF----WDFWSLNPESLHQVTWLFSDR  176

Query  235  GIPRSFRHVDGFGVHTFRFVTDDGASKLVKFHWKSLQGKASMVWEEAQQTSGKNPDFMRQ  294
            GIPRS+RH++GFGVHTF+ V  DG    VKFH+K+ QG  ++ WEEAQ+ +GK+PD+  +
Sbjct  177  GIPRSYRHMNGFGVHTFKLVNADGERVYVKFHFKTDQGIKNLTWEEAQKLAGKDPDYHTR  236

Query  295  DLHDAIEAGRYPEWELGVQIMDEEDQLRFGFDLLDPTKIVPEEFVPITKLGKMQLNRNPR  354
            DL++AIE G YP W L VQ+M EED  +F F+  D TK+ P +  P+ ++GKM LNRNP 
Sbjct  237  DLYEAIERGDYPSWTLYVQVMTEEDAEKFRFNPFDLTKVWPHKDYPLIEVGKMVLNRNPD  296

Query  355  NYFAETEQVMFQPGHIVRGVDFTEDPLLQGRLFSYLDTQLNRHGGPNFEQLPINQPRVPV  414
            NYFAE EQ  F P ++V G++ + DP+LQGRLFSY DTQ  R  GPN++QLP+N+P  PV
Sbjct  297  NYFAEVEQAAFSPSNLVPGIEPSPDPMLQGRLFSYPDTQRYRL-GPNYQQLPVNRPPCPV  355

Query  415  HNNNRDGAGQMFIPLNPHA-YSP  436
            HN  RDGA +  I       Y P
Sbjct  356  HNYQRDGAMRFDINQGSRPNYEP  378


>CDD:436209 pfam18011, Catalase_C, C-terminal domain found in long catalases. 
 This domain is found at the C-terminus of a variety of 
large catalase enzymes from bacteria. Structurally it is related 
to class I glutamine amidotransferase domains. The precise 
molecular function of this domain is uncertain.
Length=150

 Score = 202 bits (515),  Expect = 8e-62, Method: Composition-based stats.
 Identities = 84/159 (53%), Positives = 103/159 (65%), Gaps = 9/159 (6%)

Query  567  DGLKVGVLGSVQHPGSVEGASTLRDRLKDDGVDVVLVAERLADGVDQTYSTSDAIQFDAV  626
            DGL VG+L S     S+  A  L   L   GVDV++VAE LADGV++TYST+DA  FDA+
Sbjct  1    DGLTVGILASNDSDASLAQAKALAAALAAAGVDVLVVAETLADGVNRTYSTADATLFDAI  60

Query  627  VVAAGAESLFAASSFTGGSANSASGASSLYPTGRPLQILIDGFRFGKTVGALGSGTAALR  686
            VVA GAE LF+A +    S         LYP GRPLQIL+D +R GK +GALGSG++AL 
Sbjct  61   VVADGAEGLFSAKATAASS---------LYPAGRPLQILLDAYRHGKPIGALGSGSSALS  111

Query  687  NAGIATSRDGVYVAQSVTDDFANDLKEGLRTFKFLDRFP  725
             AGI+    GVYV  S  D    D++EGL TF+F DRFP
Sbjct  112  GAGISAEGPGVYVGDSADDALVEDVEEGLATFRFWDRFP  150


>CDD:461967 pfam06628, Catalase-rel, Catalase-related immune-responsive. 
 This family represents a small conserved region within catalase 
enzymes (EC:1.11.1.6). All members also contain the Catalase 
family, pfam00199 domain. Catalase decomposes hydrogen 
peroxide into water and oxygen, serving to protect cells from 
its toxic effects. This domain carries the immune-responsive 
amphipathic octa-peptide that is recognized by T cells.
Length=65

 Score = 89.0 bits (222),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 24/65 (37%), Positives = 39/65 (60%), Gaps = 0/65 (0%)

Query  472  SSSFEDVWSQPRLFYNSLVPAEKQFVIDAIRFENANVKSPVVKNNVIIQLNRIDNDLARR  531
            S  F+D +SQ  LFY S+   E+Q ++D I FE + V  P ++  ++    ++D DL +R
Sbjct  1    SIDFDDHFSQAGLFYRSMSEEERQRLVDNIAFELSKVTDPEIQERMVAHFYKVDPDLGQR  60

Query  532  VARAI  536
            VA A+
Sbjct  61   VAEAL  65



Lambda      K        H        a         alpha
   0.319    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 922566368


Query= TCONS_00021106

Length=1072
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460999 pfam03636, Glyco_hydro_65N, Glycosyl hydrolase family ...  178     2e-51
CDD:281612 pfam03632, Glyco_hydro_65m, Glycosyl hydrolase family ...  80.1    3e-16


>CDD:460999 pfam03636, Glyco_hydro_65N, Glycosyl hydrolase family 65, N-terminal 
domain.  This family of glycosyl hydrolases contains 
vacuolar acid trehalase and maltose phosphorylase.Maltose phosphorylase 
(MP) is a dimeric enzyme that catalyzes the conversion 
of maltose and inorganic phosphate into beta-D-glucose-1-phosphate 
and glucose. This domain is believed to be essential 
for catalytic activity although its precise function 
remains unknown.
Length=237

 Score = 178 bits (455),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 110/269 (41%), Gaps = 44/269 (16%)

Query  74   DQGHYQSRGSIANGYLGINVASVGPFFELDVPVSGDVINGWPLYSRRQTFATIAGFFDYQ  133
            D G  +S  S+ NGYLG   A                      YS       IAG +D  
Sbjct  9    DLGLRESLFSLGNGYLGTRGAFEEG------------------YSGHYPGTYIAGVYDRL  50

Query  134  PTTNGSNFPWLNQYGGESVISGIPHWSGLILDLGDGNYLDATVDNKTITDFRSTYDFKSG  193
                 + +P   +   E V    P+W GL L + DG   D  +D   I D+R T D + G
Sbjct  51   VGEWKNGYP---EEFEELV--NAPNWLGLRLRI-DGEPFD--LDTGEILDYRRTLDMREG  102

Query  194  VLSWSYTWTPKCNKGSFNITYRLFAHKLHVNQAVVDMEITPSQGS-EATVVNVIDGFSAV  252
            VL+ S+TW       +  + +  F      + A +  EITP   S E TV + +DG    
Sbjct  103  VLTRSFTWRSP-AGRTVRVEFERFVSMADPHLAAIRYEITPLNFSGEITVRSGLDGDVTN  161

Query  253  RTDFVES---GQDNGALFSAVRPWGISNVTAYVYTNLTASAGVDLTSRALVNDKPYVHSN  309
              DF +      D   L +  RP GI+   A             +  R  ++ KP   ++
Sbjct  162  LGDFHDPRVAEADGIWLVARTRPSGITVAMA-------------MRHRVDLDGKPLEEAD  208

Query  310  ESSIAQAVDVKFRANETVRITKFVGAASS  338
            E +IAQ   V+ +A ETV + K+V  A+S
Sbjct  209  ERTIAQTFTVELKAGETVTLEKYVAVATS  237


>CDD:281612 pfam03632, Glyco_hydro_65m, Glycosyl hydrolase family 65 central 
catalytic domain.  This family of glycosyl hydrolases contains 
vacuolar acid trehalase and maltose phosphorylase.Maltose 
phosphorylase (MP) is a dimeric enzyme that catalyzes the 
conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate 
and glucose. The central domain is the 
catalytic domain, which binds a phosphate ion that is proximal 
the the highly conserved Glu. The arrangement of the phosphate 
and the glutamate is thought to cause nucleophilic attack 
on the anomeric carbon atom. The catalytic domain also forms 
the majority of the dimerization interface.
Length=387

 Score = 80.1 bits (198),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 71/330 (22%), Positives = 120/330 (36%), Gaps = 77/330 (23%)

Query  407  NTYYLLQNTVGKNAIKAVSGAPVNVDSISVGGLTSDSYAGLVFWDADVWMQPGLVASHPE  466
            N ++LLQ     +A   + GA          GLT + Y G VFWD + ++ P  + + PE
Sbjct  3    NLFHLLQTYAPADARLDI-GAK---------GLTGEGYRGHVFWDTEAFVLPYYLLTEPE  52

Query  467  AAQRVTNYRTKLYPQALENINTAFTSSKNRTTFSPSAAIYPWTSGRFGN-CT---GTGPC  522
             A+ +  YR    P A EN                  A+YPW +G  G  C+        
Sbjct  53   VARNLLRYRYNRLPAAREN-----AKELGL-----KGALYPWQTGLDGEECSQQLHLNIR  102

Query  523  WDY--------QYHLNGDIGLSLMYQWIASGDTKTFREQHFPIYDSVATMYSNIVQRNGS  574
                       + H+NG I  ++     A+GD     +    +    A  +++    +  
Sbjct  103  TGEWEPDASFAEIHVNGAIAYAVWQYTQATGDESFLADCGLELLVETARFWASRAHFDND  162

Query  575  S--WTLTNMTDPDEYANHIDAGGFTMPLISETLSYANSFRKQFGLEQN---------ETW  623
               + +  +T PDEY N++D   +T  + +  L YA    ++               E W
Sbjct  163  HGRYHIDGVTGPDEYHNNVDNNAYTNLMAAWNLEYALEALERLPETAEGLGVDEEELEKW  222

Query  624  TEISENVLL--IREDGV------------------------------TLEYTTMNGTAVV  651
             +ISE + L    E GV                                E  ++  + V+
Sbjct  223  RDISEKMYLPFDEELGVIAQHDGFLDLAELDFAAYRALYGDITPLLLKAEGDSVLRSQVI  282

Query  652  KQADIVLVTYPLVYDNNYTAQHALNDLDYY  681
            KQAD++++ Y   Y   +       + D+Y
Sbjct  283  KQADVLMLMYLFGY--RFDEDQIRRNFDFY  310



Lambda      K        H        a         alpha
   0.315    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1381894976


Query= TCONS_00026404

Length=1072
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460999 pfam03636, Glyco_hydro_65N, Glycosyl hydrolase family ...  178     2e-51
CDD:281612 pfam03632, Glyco_hydro_65m, Glycosyl hydrolase family ...  80.1    3e-16


>CDD:460999 pfam03636, Glyco_hydro_65N, Glycosyl hydrolase family 65, N-terminal 
domain.  This family of glycosyl hydrolases contains 
vacuolar acid trehalase and maltose phosphorylase.Maltose phosphorylase 
(MP) is a dimeric enzyme that catalyzes the conversion 
of maltose and inorganic phosphate into beta-D-glucose-1-phosphate 
and glucose. This domain is believed to be essential 
for catalytic activity although its precise function 
remains unknown.
Length=237

 Score = 178 bits (455),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 110/269 (41%), Gaps = 44/269 (16%)

Query  74   DQGHYQSRGSIANGYLGINVASVGPFFELDVPVSGDVINGWPLYSRRQTFATIAGFFDYQ  133
            D G  +S  S+ NGYLG   A                      YS       IAG +D  
Sbjct  9    DLGLRESLFSLGNGYLGTRGAFEEG------------------YSGHYPGTYIAGVYDRL  50

Query  134  PTTNGSNFPWLNQYGGESVISGIPHWSGLILDLGDGNYLDATVDNKTITDFRSTYDFKSG  193
                 + +P   +   E V    P+W GL L + DG   D  +D   I D+R T D + G
Sbjct  51   VGEWKNGYP---EEFEELV--NAPNWLGLRLRI-DGEPFD--LDTGEILDYRRTLDMREG  102

Query  194  VLSWSYTWTPKCNKGSFNITYRLFAHKLHVNQAVVDMEITPSQGS-EATVVNVIDGFSAV  252
            VL+ S+TW       +  + +  F      + A +  EITP   S E TV + +DG    
Sbjct  103  VLTRSFTWRSP-AGRTVRVEFERFVSMADPHLAAIRYEITPLNFSGEITVRSGLDGDVTN  161

Query  253  RTDFVES---GQDNGALFSAVRPWGISNVTAYVYTNLTASAGVDLTSRALVNDKPYVHSN  309
              DF +      D   L +  RP GI+   A             +  R  ++ KP   ++
Sbjct  162  LGDFHDPRVAEADGIWLVARTRPSGITVAMA-------------MRHRVDLDGKPLEEAD  208

Query  310  ESSIAQAVDVKFRANETVRITKFVGAASS  338
            E +IAQ   V+ +A ETV + K+V  A+S
Sbjct  209  ERTIAQTFTVELKAGETVTLEKYVAVATS  237


>CDD:281612 pfam03632, Glyco_hydro_65m, Glycosyl hydrolase family 65 central 
catalytic domain.  This family of glycosyl hydrolases contains 
vacuolar acid trehalase and maltose phosphorylase.Maltose 
phosphorylase (MP) is a dimeric enzyme that catalyzes the 
conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate 
and glucose. The central domain is the 
catalytic domain, which binds a phosphate ion that is proximal 
the the highly conserved Glu. The arrangement of the phosphate 
and the glutamate is thought to cause nucleophilic attack 
on the anomeric carbon atom. The catalytic domain also forms 
the majority of the dimerization interface.
Length=387

 Score = 80.1 bits (198),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 71/330 (22%), Positives = 120/330 (36%), Gaps = 77/330 (23%)

Query  407  NTYYLLQNTVGKNAIKAVSGAPVNVDSISVGGLTSDSYAGLVFWDADVWMQPGLVASHPE  466
            N ++LLQ     +A   + GA          GLT + Y G VFWD + ++ P  + + PE
Sbjct  3    NLFHLLQTYAPADARLDI-GAK---------GLTGEGYRGHVFWDTEAFVLPYYLLTEPE  52

Query  467  AAQRVTNYRTKLYPQALENINTAFTSSKNRTTFSPSAAIYPWTSGRFGN-CT---GTGPC  522
             A+ +  YR    P A EN                  A+YPW +G  G  C+        
Sbjct  53   VARNLLRYRYNRLPAAREN-----AKELGL-----KGALYPWQTGLDGEECSQQLHLNIR  102

Query  523  WDY--------QYHLNGDIGLSLMYQWIASGDTKTFREQHFPIYDSVATMYSNIVQRNGS  574
                       + H+NG I  ++     A+GD     +    +    A  +++    +  
Sbjct  103  TGEWEPDASFAEIHVNGAIAYAVWQYTQATGDESFLADCGLELLVETARFWASRAHFDND  162

Query  575  S--WTLTNMTDPDEYANHIDAGGFTMPLISETLSYANSFRKQFGLEQN---------ETW  623
               + +  +T PDEY N++D   +T  + +  L YA    ++               E W
Sbjct  163  HGRYHIDGVTGPDEYHNNVDNNAYTNLMAAWNLEYALEALERLPETAEGLGVDEEELEKW  222

Query  624  TEISENVLL--IREDGV------------------------------TLEYTTMNGTAVV  651
             +ISE + L    E GV                                E  ++  + V+
Sbjct  223  RDISEKMYLPFDEELGVIAQHDGFLDLAELDFAAYRALYGDITPLLLKAEGDSVLRSQVI  282

Query  652  KQADIVLVTYPLVYDNNYTAQHALNDLDYY  681
            KQAD++++ Y   Y   +       + D+Y
Sbjct  283  KQADVLMLMYLFGY--RFDEDQIRRNFDFY  310



Lambda      K        H        a         alpha
   0.315    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1381894976


Query= TCONS_00021107

Length=599
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459979 pfam00884, Sulfatase, Sulfatase                            169     1e-48


>CDD:459979 pfam00884, Sulfatase, Sulfatase.  
Length=298

 Score = 169 bits (431),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 97/435 (22%), Positives = 145/435 (33%), Gaps = 139/435 (32%)

Query  5    PNFLVIVADDLGFSDCGCFGSEI-STPNIDALAYSRGGLRFTSFHVAA-ACAPTRSMLMT  62
            PN ++++ + L   D G +G    +TP +D LA    GL F++F+      AP+R  L+T
Sbjct  1    PNVVLVLGESLRAPDLGLYGYPRPTTPFLDRLA--EEGLLFSNFYSGGTLTAPSRFALLT  58

Query  63   GTDHHLTGLGQLPEYIALSRAHQGAPGHEGYLNERVVALPELLRDGGYYTLMSGKWHLGL  122
            G   H  G                       L     +LP+LL+  GY T   GKWHLG 
Sbjct  59   GLPPHNFGSYVS---------------TPVGLPRTEPSLPDLLKRAGYNTGAIGKWHLGW  103

Query  123  KREYSPHARGFAKSYAMLSGAANHYGYEPLYDDAVTDVHPFFQTTVTALHMEDAEYSTKL  182
                SP   GF K +   +G+  +                              +     
Sbjct  104  YNNQSPCNLGFDKFFGRNTGSDLYADPP--------------------------DVPYNC  137

Query  183  PEDFYSSQTYASKVIEFLSERPKSENGKPFFAYLPFTAPHWPLQAPKSYVDKYRGMYNEG  242
                 S +    + +EFL       N KPFF  L     H P   P  Y +KY       
Sbjct  138  SGGGVSDEALLDEALEFLDN-----NDKPFFLVLHTLGSHGPPYYPDRYPEKYATFKPSS  192

Query  243  PAALRLKRLERLKELGLVAPDIVPHDVVTGPGDIDWEMMSNEERAKSARAMEVYAAMVEV  302
             +                                              + +  Y   +  
Sbjct  193  CSE--------------------------------------------EQLLNSYDNTLLY  208

Query  303  MDENIGRVLDYLRQSGEYDDTIICFMSDNGAEGASYEASPLGGSGITAHLEKYYDNSLEN  362
             D+ IGRVLD L ++G  D+T++ + SD+G          LG  G   H  KY +     
Sbjct  209  TDDAIGRVLDKLEENGLLDNTLVVYTSDHGES--------LGEGGGYLHGGKYDN-----  255

Query  363  IGRPNSYVWYGSRWAQAATAPSRLYKMFSTEGGCRVPLVVKPAGNPEALHEGGRVIDAFC  422
                                        + EGG RVPL++   G        G+  +A  
Sbjct  256  ----------------------------APEGGYRVPLLIWSPGGKAK----GQKSEALV  283

Query  423  TVMDIVPTILEYAGL  437
            + +D+ PTIL+ AG+
Sbjct  284  SHVDLFPTILDLAGI  298



Lambda      K        H        a         alpha
   0.317    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 757674996


Query= TCONS_00026405

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463057 pfam10357, Kin17_mid, Domain of Kin17 curved DNA-bindi...  118     7e-35


>CDD:463057 pfam10357, Kin17_mid, Domain of Kin17 curved DNA-binding protein. 
 Kin17_mid is the conserved central 169 residue region 
of a family of Kin17 proteins. Towards the N-terminal end there 
is a zinc-finger domain, and in human and mouse members 
there is a RecA-like domain further downstream. The Kin17 protein 
in humans forms intra-nuclear foci during cell proliferation 
and is re-distributed in the nucleoplasm during the cell 
cycle.
Length=123

 Score = 118 bits (299),  Expect = 7e-35, Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 50/59 (85%), Gaps = 0/59 (0%)

Query  1    MNATKWKSLTQFAAYLGREGICRVEETEKGLFVSYIDRSPETMRRREAILKKERQDRGD  59
            MNAT+W SLT+F  YLGREG CRVEETEKG F+SYIDRSPE + R+EA+ KKE+Q++ D
Sbjct  53   MNATRWTSLTEFVKYLGREGKCRVEETEKGWFISYIDRSPEALARQEALRKKEKQEKDD  111



Lambda      K        H        a         alpha
   0.306    0.123    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00021108

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00026406

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00026407

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00026408

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00021109

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00021110

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription f...  62.2    1e-14


>CDD:395650 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor (CBF/NF-Y) 
and archaeal histone.  This family includes archaebacterial 
histones and histone like transcription factors from 
eukaryotes.
Length=65

 Score = 62.2 bits (152),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 3/68 (4%)

Query  30  TLFPTATVQKIITEILPPSSGQTFSKDARDLLMECCVEFITLISSEANDISEKEAKKTIA  89
              P A V++I+     P +G+  S+DA++L+ EC  EFI  ++SEA +I  K  +KTI 
Sbjct  1   AELPIARVKRIMKSD--PDAGR-ISQDAKELIAECVEEFIEFVASEAAEICNKAGRKTIN  57

Query  90  CEHVERAL  97
            EH+++A+
Sbjct  58  PEHIKQAV  65



Lambda      K        H        a         alpha
   0.321    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00021111

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00026409

Length=170
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase. This fam...  57.8    6e-11


>CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase.  This family includes 
various FAD dependent oxidoreductases: Glycerol-3-phosphate 
dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit 
EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate 
oxidase EC:1.4.3.1.
Length=339

 Score = 57.8 bits (140),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 27/88 (31%), Positives = 42/88 (48%), Gaps = 8/88 (9%)

Query  4   VILGGGIIGSSIAYYLSENGSSDEIHIVEASSQLFSAASGYAAGFLAKDWFTP---ALAS  60
           V++GGGI+G S AY L+  G S  + ++E      S ASG  AG +           LA 
Sbjct  3   VVIGGGIVGLSTAYELARRGLS--VTLLERGDDPGSGASGRNAGLIHPGLRYLEPSELAR  60

Query  61  LGELSFNLHQSLADKNG---GRQEWGYM  85
           L   + +L + L ++ G   G +  G +
Sbjct  61  LALEALDLWEELEEELGIDCGFRRCGVL  88



Lambda      K        H        a         alpha
   0.311    0.126    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00021113

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase. This fam...  111     5e-28


>CDD:426168 pfam01266, DAO, FAD dependent oxidoreductase.  This family includes 
various FAD dependent oxidoreductases: Glycerol-3-phosphate 
dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit 
EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate 
oxidase EC:1.4.3.1.
Length=339

 Score = 111 bits (280),  Expect = 5e-28, Method: Composition-based stats.
 Identities = 90/429 (21%), Positives = 149/429 (35%), Gaps = 102/429 (24%)

Query  4    VILGGGIIGSSIAYYLSENGSSDEIHIVEASSQLFSAASGYAAGFLAKDWFTP---ALAS  60
            V++GGGI+G S AY L+  G S  + ++E      S ASG  AG +           LA 
Sbjct  3    VVIGGGIVGLSTAYELARRGLS--VTLLERGDDPGSGASGRNAGLIHPGLRYLEPSELAR  60

Query  61   LGELSFNLHQSLADKNGGRQEWGYMKSTALSLDFSKNNNKRGASGDDWLSTGASRAEAAT  120
            L   + +L + L ++ G   + G+ +   L L        R    +            A 
Sbjct  61   LALEALDLWEELEEELG--IDCGFRRCGVLVLA-------RDEEEEAL------EKLLAA  105

Query  121  SSSSPVHVEVPAWLTKQKKGIIEKISDDDTVA-------QVDPLRLARFLMESSLSRGVK  173
                 V  E    L  ++   +E +               VDP RL R L  ++ + GV+
Sbjct  106  LRRLGVPAE---LLDAEELRELEPLLPGLRGGLFYPDGGHVDPARLLRALARAAEALGVR  162

Query  174  LHNPAKATSVITDQVSGYITGVKVMNLDAQTECTLPCANIIICAGPWTPQVYHELFPLSR  233
            +    + T +   +  G + GV        T        ++  AG W       L  L  
Sbjct  163  IIEGTEVTGI---EEEGGVWGV-------VTTGEADA--VVNAAGAWAD-----LLALPG  205

Query  234  LPIPITPLAGYSLVVRSPRHTLQDERVTYANRSHAVFTTHPDSCGFCPEIFSRQGGEIYI  293
            L +P+ P+ G  LV+         E +  A     V  T     G    +  R  G + +
Sbjct  206  LRLPVRPVRGQVLVL---------EPLPEALLILPVPITVDPGRGV--YLRPRADGRLLL  254

Query  294  AGLNDRHIPLPAQAGDSCKLMDQNEMRRLKKVAVHLMGAQEEGNVESTDGIANRNDLEIL  353
             G ++                D  E+  L + A  L  A                  +I 
Sbjct  255  GGTDEEDGFDDPTP-------DPEEIEELLEAARRLFPA----------------LADIE  291

Query  354  REGLCFRPVSAHGVPFVARIDDHLLGGPKTGSINRCENGITRGGVFVASGHGPWGISLSL  413
            R     RP    G+P + R                        G+++A+GHG  G++L+ 
Sbjct  292  RAWAGLRP-LPDGLPIIGRPGS--------------------PGLYLATGHGGHGLTLAP  330

Query  414  GTGKVISQM  422
            G GK+++++
Sbjct  331  GIGKLLAEL  339



Lambda      K        H        a         alpha
   0.317    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 533728992


Query= TCONS_00026410

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00021116

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00021114

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00021115

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462214 pfam07574, SMC_Nse1, Nse1 non-SMC component of SMC5-6 ...  288     5e-99
CDD:430187 pfam08746, zf-RING-like, RING-like domain. This is a z...  79.7    8e-20


>CDD:462214 pfam07574, SMC_Nse1, Nse1 non-SMC component of SMC5-6 complex. 
 S. cerevisiae Nse1 forms part of a complex with SMC5-SMC6. 
This non-structural maintenance of chromosomes (SMC) complex 
plays an essential role in genomic stability, being involved 
in DNA repair and DNA metabolism. It is conserved in eukaryotes 
from yeast to human. This domain lies immediatley up-stream 
of the DNA-binding zinc-finger domain, zf-RING-like 
pfam08746.
Length=196

 Score = 288 bits (740),  Expect = 5e-99, Method: Composition-based stats.
 Identities = 111/205 (54%), Positives = 140/205 (68%), Gaps = 13/205 (6%)

Query  15   RAFLQAFMARSTMTFEEARSVLAAIFSVHEGQPVSP-DDVSQEDLDSYINAANAAISPFD  73
            RAFLQA +AR T+T EEA+ +LAAIFS  EG+PV P DD++Q+DL+ YI+  N A+SP D
Sbjct  1    RAFLQALLARGTLTEEEAKPILAAIFSADEGEPVDPNDDITQDDLNDYISTINVALSPLD  60

Query  74   LEIRSTLRQLQIDHHINETTQAERVYALVNTTSDALMQLATTYSADEIAFIKRVLDAIFD  133
             EIRS   QL          +    YALVNTTSD   QLATT+S DEIAFIKR+LDA+FD
Sbjct  61   YEIRSVRHQL---------GKERVYYALVNTTSDPETQLATTFSPDEIAFIKRLLDAMFD  111

Query  134  TYNTRRCEAMVVSGIQAMQLAK--ASSDSSRRESQAATQ-QVQGGAAQSLTMSQAETVLK  190
            TYNT R E M ++ +QA++LA+  A    +R  S   T    Q   A  LT S+AE +L 
Sbjct  112  TYNTPRMEVMAITSMQAIKLARILAPPRRNRWSSYGYTAGSGQLSQAAGLTHSEAEKLLT  171

Query  191  QLVEEGWLEKSRKGYYSLSPRGLME  215
            +LVEEGWLE+SR+G+Y LSPR L+E
Sbjct  172  RLVEEGWLERSREGFYGLSPRALLE  196


>CDD:430187 pfam08746, zf-RING-like, RING-like domain.  This is a zinc finger 
domain that is related to the C3HC4 RING finger domain 
(pfam00097).
Length=43

 Score = 79.7 bits (197),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 24/43 (56%), Positives = 31/43 (72%), Gaps = 0/43 (0%)

Query  239  CAACKDIITVGQRCGNRDCSGRLHDMCTHNFFRMRQAEQCPVC  281
            C ACK+I+T GQRC N DC+ RLHD C   +FR R++ +CP C
Sbjct  1    CEACKEIVTQGQRCPNEDCNVRLHDDCLRKYFRTRRSPKCPKC  43



Lambda      K        H        a         alpha
   0.315    0.126    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00026412

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain. ...  80.5    1e-19
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  71.1    9e-17
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  56.1    3e-11


>CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain.  This family 
appears to have methyltransferase activity.
Length=150

 Score = 80.5 bits (199),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 45/115 (39%), Positives = 65/115 (57%), Gaps = 4/115 (3%)

Query  25   QKMLALAHENVEKAGITNASFVEGFITAIP--LEDSTADCIISNCVVNLVPKEQKSLVFH  82
            ++ +  A EN +K G  N  F +G I  +P  LED   D +ISNCV+N +P      V  
Sbjct  38   EEAIEKARENAQKLGFDNVEFEQGDIEELPELLEDDKFDVVISNCVLNHIP--DPDKVLQ  95

Query  83   EMFRLLKPGGRVAISDILARRELPPEIANDLALYVGCIAGASQAQQYHAYLKDAG  137
            E+ R+LKPGGR+ ISD  +  ELP  +  D   Y GC+ GA   ++ +  L++AG
Sbjct  96   EILRVLKPGGRLIISDPDSLAELPAHVKEDSTYYAGCVGGAILKKKLYELLEEAG  150


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 71.1 bits (175),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 23/68 (34%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query  25  QKMLALAHENVEKAGITNASFVEGFITAIPLEDSTADCIISNCVVNLVPKEQKSLVFHEM  84
            +ML  A E   +AG+ N  FV+G    +P  D + D ++S+ V++ +P         E+
Sbjct  30  PEMLERARERAAEAGL-NVEFVQGDAEDLPFPDGSFDLVVSSGVLHHLPDPDLEAALREI  88

Query  85  FRLLKPGG  92
            R+LKPGG
Sbjct  89  ARVLKPGG  96


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 56.1 bits (136),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 25/74 (34%), Positives = 41/74 (55%), Gaps = 5/74 (7%)

Query  23  IYQKMLALAHENVEKAGITNASFVEGFITAIPLEDSTADCIISNCVVNLVPKEQKSLVFH  82
           I  +ML LA E   + G+T   FV G    +P  D++ D ++S+ V++ V   ++     
Sbjct  26  ISPEMLELAREKAPREGLT---FVVGDAEDLPFPDNSFDLVLSSEVLHHVEDPER--ALR  80

Query  83  EMFRLLKPGGRVAI  96
           E+ R+LKPGG + I
Sbjct  81  EIARVLKPGGILII  94



Lambda      K        H        a         alpha
   0.321    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00021117

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.143    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0728    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00021118

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396514 pfam01965, DJ-1_PfpI, DJ-1/PfpI family. The family inc...  75.8    1e-17


>CDD:396514 pfam01965, DJ-1_PfpI, DJ-1/PfpI family.  The family includes 
the protease PfpI. This domain is also found in transcriptional 
regulators.
Length=165

 Score = 75.8 bits (187),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 13/169 (8%)

Query  5    HRILSLVYNDFEAPNLFDPLGA-------IIPHSPQGIETSIKNGIAVIPTLSLAEALRE  57
             ++L L+ + FE   L  P          +   S  G E     G+ V    SL +   +
Sbjct  1    KKVLVLLADGFEDIELIYPADVLRRAGIKVTVVSVDGGEVKGSRGVKVTVDASLDDVKPD  60

Query  58   DHQFDTLFIPGGFGMLPLIWDPILLQRIGK-LVDRAANILTVCTGSILLAATGRLDGRKA  116
            D  +D L +PGG      + D   L    K   ++   +  +C G  +LAA G L GRK 
Sbjct  61   D--YDALVLPGGRAGPERLRDNEKLVEFVKDFYEKGKPVAAICHGPQVLAAAGVLKGRKV  118

Query  117  TTNKRLYDELTPKFPGVQWQKRARWVQDGKFLTSSGVTAGIDAGLVFMA  165
            T++  + D+L     G  +  +   V DG  +TS G     +  L  + 
Sbjct  119  TSHPAVKDDL--INAGATYVDK-PVVVDGNLVTSRGPGDAPEFALEILE  164



Lambda      K        H        a         alpha
   0.320    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00021119

Length=954


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1214821608


Query= TCONS_00021120

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00021121

Length=908


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1167072882


Query= TCONS_00021122

Length=1178


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1509333278


Query= TCONS_00021123

Length=1028


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1319596432


Query= TCONS_00026414

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00021124

Length=451
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  74.2    8e-16


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 74.2 bits (183),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 70/386 (18%), Positives = 117/386 (30%), Gaps = 178/386 (46%)

Query  67   FKVIRKLGEGSYSTVWLARDLKNCRYVALK-IPVSEIS-----GVTAELRIIRHLTEIAP  120
            ++V+RKLG GS+ TV+ A+     + VA+K I   +I       +  E++I++ L     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKL-----  55

Query  121  AEAARH--VTRLLGEFEHRGPNGLHRCLVFEPM-GPSVNTMVEELPQFKPRRRGMKVRYP  177
                 H  + RL   FE    +  +  LV E + G S+  ++ E           K  + 
Sbjct  56   ----NHPNIVRLYDAFE----DKDNLYLVLEYVEGGSLFDLLSE-----------KGAFS  96

Query  178  LRMAKSILKQSLQALAFLHEHGIAHGDFQPGNILFTLNDIDSTAEDSLRQEEDVQARSIS  237
             R AK I+KQ L+ L                                             
Sbjct  97   EREAKFIMKQILEGLE--------------------------------------------  112

Query  238  PPVQRLDNKQDRWAPPYLCVSQPLVPFTSYAEGLKVKLSDMGGAFFFTDPPQKPVTPLGL  297
                                       T++                         TP   
Sbjct  113  ----------------------SGSSLTTFV-----------------------GTP-WY  126

Query  298  RLPELILTGAVDNSIDVWCFGCLVFELITGQPLFCIPGSEYENDDHLLSLTARLGALPDE  357
              PE++        +DVW  GC+++EL+TG+P F                    G   +E
Sbjct  127  MAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFP-------------------GINGNE  167

Query  358  LFRHWETSSLYFTPEKQLFNCQLGGVAPGEKPLMVEQLSMEALFDMTEPNLDEDEAQKVK  417
            ++                               +++Q            NL E+     K
Sbjct  168  IYEL-----------------------------IIDQPYAFPELP---SNLSEE----AK  191

Query  418  TFIRWILQYDPVKRPSPARILSEPWF  443
              ++ +L+ DP KR +  + L  PWF
Sbjct  192  DLLKKLLKKDPSKRLTATQALQHPWF  217



Lambda      K        H        a         alpha
   0.321    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 553667144


Query= TCONS_00026415

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00021125

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00021126

Length=172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A...  63.8    3e-14


>CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A.  This 
protein is found in eukaryotes. Proteins in this family are 
typically between 171 to 275 amino acids in length. Although 
the HsbA amino acid sequence suggests that HsbA may be hydrophilic, 
HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) 
surfaces in the presence of NaCl or CaCl2. 
When HsbA was adsorbed on the hydrophobic PBSA surfaces, 
it promoted PBSA degradation via the CutL1 polyesterase. CutL1 
interacts directly with HsbA attached to the hydrophobic 
QCM electrode surface. These results suggest that when HsbA 
is adsorbed onto the PBSA surface, it recruits CutL1, and that 
when CutL1 is accumulated on the PBSA surface, it stimulates 
PBSA degradation.
Length=123

 Score = 63.8 bits (156),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 31/115 (27%), Positives = 50/115 (43%), Gaps = 2/115 (2%)

Query  27   ISDMDNLARAIGDTRVSLQSYQGGA--FGAINTASAVNNAKLAARAARENLAASGAFTPD  84
            ISD+  ++ A+     ++ +Y GG     A+   SA N    A + A  +  AS   T  
Sbjct  5    ISDLTTISTAVTALDTAVNAYNGGLGLLSALPILSASNALLSAIKKATTDAQASPPLTLA  64

Query  85   EAAQYYEAYMKMTPVLLDALTVAKDKAPLFNEAGVGQPARESVRDLHSEKKMFEE  139
            EA    +A   +TP +  AL     K P F+ AG+G     S++ L +      +
Sbjct  65   EALALAQAVQTLTPDIKAALDALIAKKPAFDAAGLGSVVLSSLQLLKTASDALSD  119



Lambda      K        H        a         alpha
   0.313    0.124    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00021127

Length=601
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF34...  69.7    4e-13


>CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF3435).  This 
family of proteins are functionally uncharacterized. This 
protein is found in eukaryotes. Proteins in this family are 
typically between 435 to 791 amino acids in length. This family 
is related to pfam00589 suggesting it may be an integrase 
enzyme.
Length=418

 Score = 69.7 bits (171),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 111/349 (32%), Gaps = 101/349 (29%)

Query  121  PMSVSTIDPEFLKGYRYNDEAVLPKNWIPEQEILGKNFIFYVMVT----GIADKAF--RG  174
            P+ +    PEF KG+    +       +PE  I   + +    V        D AF    
Sbjct  66   PVLLVEFTPEFTKGFL--GKKKPNTFGLPEI-IYDPSLVLCPHVFLLGLLFRDGAFSNPS  122

Query  175  IRTTDELLDKRPPKGRESWTLEWEAHVQTLPVL-RMVTTDG-------------------  214
            I + ++L   + PKGR+   L  +  +  +PV  R+  T G                   
Sbjct  123  ITSPEDLYRLKVPKGRQQLPLPLKPEMLDIPVFCRVERTAGGVRISPDEALTYDTLNSWL  182

Query  215  ---------PHPT----------------PNASRAARTQALDHQNPDTFLK-YQSKFKRV  248
                      +P                    S A R   L H +  TFL+ Y  +    
Sbjct  183  KRLGEIAGFENPITPYQLRYGAGKALNESGEVSEAQRNLILQHASSRTFLRHYLPRRVDR  242

Query  249  DVQASFWNLKPDYECLEMEESMAHHRDTNVPQRLDAAAIAQIENDDEMKEIYHRIDEITQ  308
            DVQA    L P    +     M+  RD   P+ L     A +E D E++E+  +   +  
Sbjct  243  DVQAVVLGLPPQEALIRAACRMSRTRDPRRPRDLTDEQKASVERDPELQELIRKRRHLKA  302

Query  309  QIG---GKPAEHK-----ELAREREKLYTKAAKKRRAKKAEFIDNWWRSSYDEYITGN--  358
            +I    G+ A+ +     E   +R++                  N  +    +       
Sbjct  303  EIQALYGQVAKARGTPLYERYEKRQREVR---------------NERQRLRRKLKKKIRE  347

Query  359  EFGEQDPTCLFDIYRKY-------------------MPERARLRDNLFT  388
            EF E+ P    DI R+                     PER RL   L T
Sbjct  348  EFDEEQPV--IDIERQLSGLALDEEVKEDLPDEQLVPPERIRLASKLLT  394



Lambda      K        H        a         alpha
   0.320    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 760663852


Query= TCONS_00021128

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00021129

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            61.7    5e-11


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 61.7 bits (150),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 79/367 (22%), Positives = 124/367 (34%), Gaps = 51/367 (14%)

Query  14   EWHISTSTINEPNSLAVVMISISSLVWIPLLNCWGRAPVLFWSTVLGLFFTLGCILAPTF  73
            +  IS + I    +L  +  +++  +   L + +GR  VL    +L     L  + A + 
Sbjct  26   DLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSL  85

Query  74   PVYYAMRALQALTQGTGSLIGLALIQDMFFFHQYARKIGLWYAVFLISPFLGPMLGNFMV  133
             +   +R LQ L  G      LALI D F   +  R +GL  A F +   LGP+LG  + 
Sbjct  86   WLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLA  145

Query  134  AGLGKWRPLFWLVFAWAAGLTAMILAVGDETYYQRDMLLGRQPRRSGSCLWQVVGGWQLR  193
            +  G WR  F ++   +     ++L                                   
Sbjct  146  SLFG-WRAAFLILAILSLLAAVLLLLPRPPPE---------------------------S  177

Query  194  VHKDYFESVRSSYARMFLILLRPVVTVVSLVYRLLFMWSISINQTSTILLGVSRETGGYG  253
                  E  R S    +  LLR  V        LL    +       +L  +       G
Sbjct  178  KRPKPAEEARLSLIVAWKALLRDPVL------WLLLALLLFGFAFFGLLTYLPLYQEVLG  231

Query  254  MSAQQIGYMYFSPVLSVCLGELVGHRLNDFIVTWYAHRHQGRFMPETRLWATYLRGFFMV  313
            +SA   G +     L   +G L+  RL+D            R     RL    L      
Sbjct  232  LSALLAGLLLGLGGLLGAIGRLLLGRLSD------------RLGRRRRLLLALLLLILAA  279

Query  314  PGLVLVGITLQQHLHWVCILFGWAMFQGGVMVVSVSMVAYVLDSYP-SVPGEVSGWINMS  372
             GL+L+ +TL      + +L        G  +V  ++ A V D  P    G  SG  N +
Sbjct  280  LGLLLLSLTLSSLWLLLALLL----LGFGFGLVFPALNALVSDLAPKEERGTASGLYNTA  335

Query  373  RAACGFA  379
             +  G  
Sbjct  336  GSLGGAL  342



Lambda      K        H        a         alpha
   0.330    0.142    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00021130

Length=299


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00021131

Length=315


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00021132

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00021133

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00021134

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00021135

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00021137

Length=1061
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  130     3e-34
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 121     1e-29


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 130 bits (329),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 69/259 (27%), Positives = 112/259 (43%), Gaps = 17/259 (7%)

Query  695  LTGSTGSLGTYILSGLLND-PHVAKVYCFNRA---ADAATRQRQGFAEKGL-DASLLEDP  749
            LTG+TG LG  +L  LL   P V K+Y   RA     A  R RQ   +  L DA L E  
Sbjct  1    LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  750  SKVEFLHVSFGDKHFGLDDSMYSKLLDTVDLIVHNAWKVNFNHPVSSFEDPHIKGVREFV  809
             ++  +     + + GL +  + +L + VD+I+H+A  VNF  P       ++ G RE +
Sbjct  61   ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  810  NFSLEARYNTHLAFVSS--VSTIAGWTPSSDESAVPELPMDTVDAVLKQ------GYGES  861
              + + +       VS+  V+   G           E  M   +           GY ++
Sbjct  121  RLAKQGKQLKPFHHVSTAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQT  180

Query  862  KHVGERICLEASRTSGVPTSVLRVGQIAGPDSRLGLWNPHEWLPSVVKTSKSMGKVPDTL  921
            K + E++  EA+R  G+P  + R   I G + + G  N  ++ P  +      G +P  L
Sbjct  181  KWLAEQLVREAAR-RGLPVVIYRPSIITG-EPKTGWINNFDFGPRGLLGGIGKGVLPSIL  238

Query  922  G--SVLVDWIAVDTLAKIT  938
            G    ++D + VD +A   
Sbjct  239  GDPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 121 bits (305),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 95/428 (22%), Positives = 142/428 (33%), Gaps = 61/428 (14%)

Query  44   VHQGFREVTFRDLCCAVNRMSWWMEKHLASSVKGATIAYLGSNDIRYIILMLASHKTGCT  103
                 R +T+R+L    NR++  +        KG  +A L  N   +++  LA  K G  
Sbjct  15   EVGEGRRLTYRELDERANRLAAGLRALGVG--KGDRVAILLPNSPEWVVAFLACLKAGAV  72

Query  104  IFFPSTRLSNEAYDSVFGATQTKMLLFSPEK-----HPLVSGLTGPSKAISSLEVPSVPE  158
                + RL  E    +   +  K+L+             +  L      +     P + E
Sbjct  73   YVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVLDRDPVLKE  132

Query  159  MLNDNPDVKNYPFTSTFEEF-EDKTAFIIHSSGTTGMPKPVSLTHGYLGTVDYSAFMPRP  217
                                  D  A+II++SGTTG PK V LTH  L     S    RP
Sbjct  133  EPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKRVRP  192

Query  218  AGRSPSFFQDLLSADPHPRDPVLSVTPYFHIMGLVSF-FVSIFHNIPFVTIS-DQPLSVS  275
             G               P D VLS  P FH  GL       +      V       L  +
Sbjct  193  RGF-----------GLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPA  241

Query  276  LLVDIIRATHPTATILPPSILED-MSLSQEALECLGTLKFVCYGGAPLAKQVGDKVSQYT  334
             L+++I     T     P++L   +         L +L+ V  GGAPL  ++  +  +  
Sbjct  242  ALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFRELF  301

Query  335  --QLRNAIGSTEIGIIGSLVPEGKENWGYFEWNPAYGI-------------DMQPVADDV  379
               L N  G TE   + +      E+        + G                +PV    
Sbjct  302  GGALVNGYGLTETTGVVTTPLPLDEDLRSL---GSVGRPLPGTEVKIVDDETGEPVPPGE  358

Query  380  Y-ELVI--PRLEDSRRMHGIFH----TFPSFKE---YRSKDLYVRHPK--IPKLWQYRGR  427
              EL +  P +     M G  +    T  +F E   YR+ DL  R     +    +  GR
Sbjct  359  PGELCVRGPGV-----MKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYL----EIVGR  409

Query  428  LDDVIVLS  435
              D I L 
Sbjct  410  KKDQIKLG  417



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1366320340


Query= TCONS_00021140

Length=868
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  130     3e-34
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 79.3    5e-16


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 130 bits (328),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 69/259 (27%), Positives = 112/259 (43%), Gaps = 17/259 (7%)

Query  502  LTGSTGSLGTYILSGLLND-PHVAKVYCFNRA---ADAATRQRQGFAEKGL-DASLLEDP  556
            LTG+TG LG  +L  LL   P V K+Y   RA     A  R RQ   +  L DA L E  
Sbjct  1    LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  557  SKVEFLHVSFGDKHFGLDDSMYSKLLDTVDLIVHNAWKVNFNHPVSSFEDPHIKGVREFV  616
             ++  +     + + GL +  + +L + VD+I+H+A  VNF  P       ++ G RE +
Sbjct  61   ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  617  NFSLEARYNTHLAFVSS--VSTIAGWTPSSDESAVPELPMDTVDAVLKQ------GYGES  668
              + + +       VS+  V+   G           E  M   +           GY ++
Sbjct  121  RLAKQGKQLKPFHHVSTAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQT  180

Query  669  KHVGERICLEASRTSGVPTSVLRVGQIAGPDSRLGLWNPHEWLPSVVKTSKSMGKVPDTL  728
            K + E++  EA+R  G+P  + R   I G + + G  N  ++ P  +      G +P  L
Sbjct  181  KWLAEQLVREAAR-RGLPVVIYRPSIITG-EPKTGWINNFDFGPRGLLGGIGKGVLPSIL  238

Query  729  G--SVLVDWIAVDTLAKIT  745
            G    ++D + VD +A   
Sbjct  239  GDPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 79.3 bits (196),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 89/272 (33%), Gaps = 53/272 (19%)

Query  1    MPKPVSLTHGYLGTVDYSAFMPRPAGRSPSFFQDLLSADPHPRDPVLSVTPYFHIMGLVS  60
             PK V LTH  L     S    RP G               P D VLS  P FH  GL  
Sbjct  169  KPKGVMLTHRNLVANVLSIKRVRPRGF-----------GLGPDDRVLSTLPLFHDFGLSL  217

Query  61   F-FVSIFHNIPFVTIS-DQPLSVSLLVDIIRATHPTATILPPSILED-MSLSQEALECLG  117
                 +      V       L  + L+++I     T     P++L   +         L 
Sbjct  218  GLLGPLLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLS  277

Query  118  TLKFVCYGGAPLAKQVGDKVSQYT--QLRNAIGSTEIGIIGSLVPEGKENWGYFEWNPAY  175
            +L+ V  GGAPL  ++  +  +     L N  G TE   + +      E+        + 
Sbjct  278  SLRLVLSGGAPLPPELARRFRELFGGALVNGYGLTETTGVVTTPLPLDEDLRSL---GSV  334

Query  176  GI-------------DMQPVADDVY-ELVI--PRLEDSRRMHGIFH----TFPSFKE---  212
            G                +PV      EL +  P +     M G  +    T  +F E   
Sbjct  335  GRPLPGTEVKIVDDETGEPVPPGEPGELCVRGPGV-----MKGYLNDPELTAEAFDEDGW  389

Query  213  YRSKDLYVRHPK--IPKLWQYRGRLDDVIVLS  242
            YR+ DL  R     +    +  GR  D I L 
Sbjct  390  YRTGDLGRRDEDGYL----EIVGRKKDQIKLG  417



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1109652322


Query= TCONS_00026417

Length=811
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  124     3e-32
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 103     9e-24


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 124 bits (313),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 69/256 (27%), Positives = 110/256 (43%), Gaps = 22/256 (9%)

Query  569  LTGSTGSLGTYILSGLLND-PHVAKVYCFNRA---ADAATRQRQGFAEKGL-DASLLEDP  623
            LTG+TG LG  +L  LL   P V K+Y   RA     A  R RQ   +  L DA L E  
Sbjct  1    LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  624  SKVEFLHVSFGDKHFGLDDSMYSKLLDTVDLIVHNAWKVNFNHPVSSFEDPHIKGVREFV  683
             ++  +     + + GL +  + +L + VD+I+H+A  VNF  P       ++ G RE +
Sbjct  61   ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  684  NFSLEARYNTHLAFVSS--VSTIAGWTPSSDESAVPELPMDTVDAVLKQ------GYGES  735
              + + +       VS+  V+   G           E  M   +           GY ++
Sbjct  121  RLAKQGKQLKPFHHVSTAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQT  180

Query  736  KHVGERICLEASRTSGVPTSVLRVGQIAGPDSRLGLWNPHEWLPSVVKTSKSMGKVPDTL  795
            K + E++  EA+R  G+P  + R   I G + + G  N  ++ P  +      G +P  L
Sbjct  181  KWLAEQLVREAAR-RGLPVVIYRPSIITG-EPKTGWINNFDFGPRGLLGGIGKGVLPSIL  238

Query  796  GS-------VLVDWIA  804
            G        V VD++A
Sbjct  239  GDPDAVLDLVPVDYVA  254


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 103 bits (258),  Expect = 9e-24, Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 101/287 (35%), Gaps = 53/287 (18%)

Query  53   EDKTAFIIHSSGTTGMPKPVSLTHGYLGTVDYSAFMPRPAGRSPSFFQDLLSADPHPRDP  112
             D  A+II++SGTTG PK V LTH  L     S    RP G               P D 
Sbjct  154  PDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGF-----------GLGPDDR  202

Query  113  VLSVTPYFHIMGLVSF-FVSIFHNIPFVTIS-DQPLSVSLLVDIIRATHPTATILPPSIL  170
            VLS  P FH  GL       +      V       L  + L+++I     T     P++L
Sbjct  203  VLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLL  262

Query  171  ED-MSLSQEALECLGTLKFVCYGGAPLAKQVGDKVSQYT--QLRNAIGSTEIGIIGSLVP  227
               +         L +L+ V  GGAPL  ++  +  +     L N  G TE   + +   
Sbjct  263  NMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFRELFGGALVNGYGLTETTGVVTTPL  322

Query  228  EGKENWGYFEWNPAYGI-------------DMQPVADDVY-ELVI--PRLEDSRRMHGIF  271
               E+        + G                +PV      EL +  P +     M G  
Sbjct  323  PLDEDLRSL---GSVGRPLPGTEVKIVDDETGEPVPPGEPGELCVRGPGV-----MKGYL  374

Query  272  H----TFPSFKE---YRSKDLYVRHPK--IPKLWQYRGRLDDVIVLS  309
            +    T  +F E   YR+ DL  R     +    +  GR  D I L 
Sbjct  375  NDPELTAEAFDEDGWYRTGDLGRRDEDGYL----EIVGRKKDQIKLG  417



Lambda      K        H        a         alpha
   0.318    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1043343984


Query= TCONS_00026416

Length=811
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  124     3e-32
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 103     9e-24


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 124 bits (313),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 69/256 (27%), Positives = 110/256 (43%), Gaps = 22/256 (9%)

Query  569  LTGSTGSLGTYILSGLLND-PHVAKVYCFNRA---ADAATRQRQGFAEKGL-DASLLEDP  623
            LTG+TG LG  +L  LL   P V K+Y   RA     A  R RQ   +  L DA L E  
Sbjct  1    LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  624  SKVEFLHVSFGDKHFGLDDSMYSKLLDTVDLIVHNAWKVNFNHPVSSFEDPHIKGVREFV  683
             ++  +     + + GL +  + +L + VD+I+H+A  VNF  P       ++ G RE +
Sbjct  61   ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  684  NFSLEARYNTHLAFVSS--VSTIAGWTPSSDESAVPELPMDTVDAVLKQ------GYGES  735
              + + +       VS+  V+   G           E  M   +           GY ++
Sbjct  121  RLAKQGKQLKPFHHVSTAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQT  180

Query  736  KHVGERICLEASRTSGVPTSVLRVGQIAGPDSRLGLWNPHEWLPSVVKTSKSMGKVPDTL  795
            K + E++  EA+R  G+P  + R   I G + + G  N  ++ P  +      G +P  L
Sbjct  181  KWLAEQLVREAAR-RGLPVVIYRPSIITG-EPKTGWINNFDFGPRGLLGGIGKGVLPSIL  238

Query  796  GS-------VLVDWIA  804
            G        V VD++A
Sbjct  239  GDPDAVLDLVPVDYVA  254


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 103 bits (258),  Expect = 9e-24, Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 101/287 (35%), Gaps = 53/287 (18%)

Query  53   EDKTAFIIHSSGTTGMPKPVSLTHGYLGTVDYSAFMPRPAGRSPSFFQDLLSADPHPRDP  112
             D  A+II++SGTTG PK V LTH  L     S    RP G               P D 
Sbjct  154  PDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGF-----------GLGPDDR  202

Query  113  VLSVTPYFHIMGLVSF-FVSIFHNIPFVTIS-DQPLSVSLLVDIIRATHPTATILPPSIL  170
            VLS  P FH  GL       +      V       L  + L+++I     T     P++L
Sbjct  203  VLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLL  262

Query  171  ED-MSLSQEALECLGTLKFVCYGGAPLAKQVGDKVSQYT--QLRNAIGSTEIGIIGSLVP  227
               +         L +L+ V  GGAPL  ++  +  +     L N  G TE   + +   
Sbjct  263  NMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFRELFGGALVNGYGLTETTGVVTTPL  322

Query  228  EGKENWGYFEWNPAYGI-------------DMQPVADDVY-ELVI--PRLEDSRRMHGIF  271
               E+        + G                +PV      EL +  P +     M G  
Sbjct  323  PLDEDLRSL---GSVGRPLPGTEVKIVDDETGEPVPPGEPGELCVRGPGV-----MKGYL  374

Query  272  H----TFPSFKE---YRSKDLYVRHPK--IPKLWQYRGRLDDVIVLS  309
            +    T  +F E   YR+ DL  R     +    +  GR  D I L 
Sbjct  375  NDPELTAEAFDEDGWYRTGDLGRRDEDGYL----EIVGRKKDQIKLG  417



Lambda      K        H        a         alpha
   0.318    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0728    0.140     1.90     42.6     43.6 

Effective search space used: 1043343984


Query= TCONS_00021138

Length=868
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  130     3e-34
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 79.3    5e-16


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 130 bits (328),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 69/259 (27%), Positives = 112/259 (43%), Gaps = 17/259 (7%)

Query  502  LTGSTGSLGTYILSGLLND-PHVAKVYCFNRA---ADAATRQRQGFAEKGL-DASLLEDP  556
            LTG+TG LG  +L  LL   P V K+Y   RA     A  R RQ   +  L DA L E  
Sbjct  1    LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  557  SKVEFLHVSFGDKHFGLDDSMYSKLLDTVDLIVHNAWKVNFNHPVSSFEDPHIKGVREFV  616
             ++  +     + + GL +  + +L + VD+I+H+A  VNF  P       ++ G RE +
Sbjct  61   ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  617  NFSLEARYNTHLAFVSS--VSTIAGWTPSSDESAVPELPMDTVDAVLKQ------GYGES  668
              + + +       VS+  V+   G           E  M   +           GY ++
Sbjct  121  RLAKQGKQLKPFHHVSTAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQT  180

Query  669  KHVGERICLEASRTSGVPTSVLRVGQIAGPDSRLGLWNPHEWLPSVVKTSKSMGKVPDTL  728
            K + E++  EA+R  G+P  + R   I G + + G  N  ++ P  +      G +P  L
Sbjct  181  KWLAEQLVREAAR-RGLPVVIYRPSIITG-EPKTGWINNFDFGPRGLLGGIGKGVLPSIL  238

Query  729  G--SVLVDWIAVDTLAKIT  745
            G    ++D + VD +A   
Sbjct  239  GDPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 79.3 bits (196),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 89/272 (33%), Gaps = 53/272 (19%)

Query  1    MPKPVSLTHGYLGTVDYSAFMPRPAGRSPSFFQDLLSADPHPRDPVLSVTPYFHIMGLVS  60
             PK V LTH  L     S    RP G               P D VLS  P FH  GL  
Sbjct  169  KPKGVMLTHRNLVANVLSIKRVRPRGF-----------GLGPDDRVLSTLPLFHDFGLSL  217

Query  61   F-FVSIFHNIPFVTIS-DQPLSVSLLVDIIRATHPTATILPPSILED-MSLSQEALECLG  117
                 +      V       L  + L+++I     T     P++L   +         L 
Sbjct  218  GLLGPLLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLS  277

Query  118  TLKFVCYGGAPLAKQVGDKVSQYT--QLRNAIGSTEIGIIGSLVPEGKENWGYFEWNPAY  175
            +L+ V  GGAPL  ++  +  +     L N  G TE   + +      E+        + 
Sbjct  278  SLRLVLSGGAPLPPELARRFRELFGGALVNGYGLTETTGVVTTPLPLDEDLRSL---GSV  334

Query  176  GI-------------DMQPVADDVY-ELVI--PRLEDSRRMHGIFH----TFPSFKE---  212
            G                +PV      EL +  P +     M G  +    T  +F E   
Sbjct  335  GRPLPGTEVKIVDDETGEPVPPGEPGELCVRGPGV-----MKGYLNDPELTAEAFDEDGW  389

Query  213  YRSKDLYVRHPK--IPKLWQYRGRLDDVIVLS  242
            YR+ DL  R     +    +  GR  D I L 
Sbjct  390  YRTGDLGRRDEDGYL----EIVGRKKDQIKLG  417



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1109652322


Query= TCONS_00026419

Length=937
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  124     3e-32
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 120     2e-29


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 124 bits (314),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 69/256 (27%), Positives = 110/256 (43%), Gaps = 22/256 (9%)

Query  695  LTGSTGSLGTYILSGLLND-PHVAKVYCFNRA---ADAATRQRQGFAEKGL-DASLLEDP  749
            LTG+TG LG  +L  LL   P V K+Y   RA     A  R RQ   +  L DA L E  
Sbjct  1    LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  750  SKVEFLHVSFGDKHFGLDDSMYSKLLDTVDLIVHNAWKVNFNHPVSSFEDPHIKGVREFV  809
             ++  +     + + GL +  + +L + VD+I+H+A  VNF  P       ++ G RE +
Sbjct  61   ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  810  NFSLEARYNTHLAFVSS--VSTIAGWTPSSDESAVPELPMDTVDAVLKQ------GYGES  861
              + + +       VS+  V+   G           E  M   +           GY ++
Sbjct  121  RLAKQGKQLKPFHHVSTAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQT  180

Query  862  KHVGERICLEASRTSGVPTSVLRVGQIAGPDSRLGLWNPHEWLPSVVKTSKSMGKVPDTL  921
            K + E++  EA+R  G+P  + R   I G + + G  N  ++ P  +      G +P  L
Sbjct  181  KWLAEQLVREAAR-RGLPVVIYRPSIITG-EPKTGWINNFDFGPRGLLGGIGKGVLPSIL  238

Query  922  GS-------VLVDWIA  930
            G        V VD++A
Sbjct  239  GDPDAVLDLVPVDYVA  254


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 120 bits (303),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 95/428 (22%), Positives = 142/428 (33%), Gaps = 61/428 (14%)

Query  44   VHQGFREVTFRDLCCAVNRMSWWMEKHLASSVKGATIAYLGSNDIRYIILMLASHKTGCT  103
                 R +T+R+L    NR++  +        KG  +A L  N   +++  LA  K G  
Sbjct  15   EVGEGRRLTYRELDERANRLAAGLRALGVG--KGDRVAILLPNSPEWVVAFLACLKAGAV  72

Query  104  IFFPSTRLSNEAYDSVFGATQTKMLLFSPEK-----HPLVSGLTGPSKAISSLEVPSVPE  158
                + RL  E    +   +  K+L+             +  L      +     P + E
Sbjct  73   YVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVLDRDPVLKE  132

Query  159  MLNDNPDVKNYPFTSTFEEF-EDKTAFIIHSSGTTGMPKPVSLTHGYLGTVDYSAFMPRP  217
                                  D  A+II++SGTTG PK V LTH  L     S    RP
Sbjct  133  EPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKRVRP  192

Query  218  AGRSPSFFQDLLSADPHPRDPVLSVTPYFHIMGLVSF-FVSIFHNIPFVTIS-DQPLSVS  275
             G               P D VLS  P FH  GL       +      V       L  +
Sbjct  193  RGF-----------GLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPA  241

Query  276  LLVDIIRATHPTATILPPSILED-MSLSQEALECLGTLKFVCYGGAPLAKQVGDKVSQYT  334
             L+++I     T     P++L   +         L +L+ V  GGAPL  ++  +  +  
Sbjct  242  ALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFRELF  301

Query  335  --QLRNAIGSTEIGIIGSLVPEGKENWGYFEWNPAYGI-------------DMQPVADDV  379
               L N  G TE   + +      E+        + G                +PV    
Sbjct  302  GGALVNGYGLTETTGVVTTPLPLDEDLRSL---GSVGRPLPGTEVKIVDDETGEPVPPGE  358

Query  380  Y-ELVI--PRLEDSRRMHGIFH----TFPSFKE---YRSKDLYVRHPK--IPKLWQYRGR  427
              EL +  P +     M G  +    T  +F E   YR+ DL  R     +    +  GR
Sbjct  359  PGELCVRGPGV-----MKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYL----EIVGR  409

Query  428  LDDVIVLS  435
              D I L 
Sbjct  410  KKDQIKLG  417



Lambda      K        H        a         alpha
   0.318    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1208702788


Query= TCONS_00026418

Length=937
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  124     3e-32
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 120     2e-29


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 124 bits (314),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 69/256 (27%), Positives = 110/256 (43%), Gaps = 22/256 (9%)

Query  695  LTGSTGSLGTYILSGLLND-PHVAKVYCFNRA---ADAATRQRQGFAEKGL-DASLLEDP  749
            LTG+TG LG  +L  LL   P V K+Y   RA     A  R RQ   +  L DA L E  
Sbjct  1    LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  750  SKVEFLHVSFGDKHFGLDDSMYSKLLDTVDLIVHNAWKVNFNHPVSSFEDPHIKGVREFV  809
             ++  +     + + GL +  + +L + VD+I+H+A  VNF  P       ++ G RE +
Sbjct  61   ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  810  NFSLEARYNTHLAFVSS--VSTIAGWTPSSDESAVPELPMDTVDAVLKQ------GYGES  861
              + + +       VS+  V+   G           E  M   +           GY ++
Sbjct  121  RLAKQGKQLKPFHHVSTAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQT  180

Query  862  KHVGERICLEASRTSGVPTSVLRVGQIAGPDSRLGLWNPHEWLPSVVKTSKSMGKVPDTL  921
            K + E++  EA+R  G+P  + R   I G + + G  N  ++ P  +      G +P  L
Sbjct  181  KWLAEQLVREAAR-RGLPVVIYRPSIITG-EPKTGWINNFDFGPRGLLGGIGKGVLPSIL  238

Query  922  GS-------VLVDWIA  930
            G        V VD++A
Sbjct  239  GDPDAVLDLVPVDYVA  254


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 120 bits (303),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 95/428 (22%), Positives = 142/428 (33%), Gaps = 61/428 (14%)

Query  44   VHQGFREVTFRDLCCAVNRMSWWMEKHLASSVKGATIAYLGSNDIRYIILMLASHKTGCT  103
                 R +T+R+L    NR++  +        KG  +A L  N   +++  LA  K G  
Sbjct  15   EVGEGRRLTYRELDERANRLAAGLRALGVG--KGDRVAILLPNSPEWVVAFLACLKAGAV  72

Query  104  IFFPSTRLSNEAYDSVFGATQTKMLLFSPEK-----HPLVSGLTGPSKAISSLEVPSVPE  158
                + RL  E    +   +  K+L+             +  L      +     P + E
Sbjct  73   YVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVLDRDPVLKE  132

Query  159  MLNDNPDVKNYPFTSTFEEF-EDKTAFIIHSSGTTGMPKPVSLTHGYLGTVDYSAFMPRP  217
                                  D  A+II++SGTTG PK V LTH  L     S    RP
Sbjct  133  EPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKRVRP  192

Query  218  AGRSPSFFQDLLSADPHPRDPVLSVTPYFHIMGLVSF-FVSIFHNIPFVTIS-DQPLSVS  275
             G               P D VLS  P FH  GL       +      V       L  +
Sbjct  193  RGF-----------GLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPA  241

Query  276  LLVDIIRATHPTATILPPSILED-MSLSQEALECLGTLKFVCYGGAPLAKQVGDKVSQYT  334
             L+++I     T     P++L   +         L +L+ V  GGAPL  ++  +  +  
Sbjct  242  ALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFRELF  301

Query  335  --QLRNAIGSTEIGIIGSLVPEGKENWGYFEWNPAYGI-------------DMQPVADDV  379
               L N  G TE   + +      E+        + G                +PV    
Sbjct  302  GGALVNGYGLTETTGVVTTPLPLDEDLRSL---GSVGRPLPGTEVKIVDDETGEPVPPGE  358

Query  380  Y-ELVI--PRLEDSRRMHGIFH----TFPSFKE---YRSKDLYVRHPK--IPKLWQYRGR  427
              EL +  P +     M G  +    T  +F E   YR+ DL  R     +    +  GR
Sbjct  359  PGELCVRGPGV-----MKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYL----EIVGR  409

Query  428  LDDVIVLS  435
              D I L 
Sbjct  410  KKDQIKLG  417



Lambda      K        H        a         alpha
   0.318    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1208702788


Query= TCONS_00021139

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00026420

Length=868
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  130     3e-34
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 79.3    5e-16


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 130 bits (328),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 69/259 (27%), Positives = 112/259 (43%), Gaps = 17/259 (7%)

Query  502  LTGSTGSLGTYILSGLLND-PHVAKVYCFNRA---ADAATRQRQGFAEKGL-DASLLEDP  556
            LTG+TG LG  +L  LL   P V K+Y   RA     A  R RQ   +  L DA L E  
Sbjct  1    LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  557  SKVEFLHVSFGDKHFGLDDSMYSKLLDTVDLIVHNAWKVNFNHPVSSFEDPHIKGVREFV  616
             ++  +     + + GL +  + +L + VD+I+H+A  VNF  P       ++ G RE +
Sbjct  61   ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  617  NFSLEARYNTHLAFVSS--VSTIAGWTPSSDESAVPELPMDTVDAVLKQ------GYGES  668
              + + +       VS+  V+   G           E  M   +           GY ++
Sbjct  121  RLAKQGKQLKPFHHVSTAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQT  180

Query  669  KHVGERICLEASRTSGVPTSVLRVGQIAGPDSRLGLWNPHEWLPSVVKTSKSMGKVPDTL  728
            K + E++  EA+R  G+P  + R   I G + + G  N  ++ P  +      G +P  L
Sbjct  181  KWLAEQLVREAAR-RGLPVVIYRPSIITG-EPKTGWINNFDFGPRGLLGGIGKGVLPSIL  238

Query  729  G--SVLVDWIAVDTLAKIT  745
            G    ++D + VD +A   
Sbjct  239  GDPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 79.3 bits (196),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 89/272 (33%), Gaps = 53/272 (19%)

Query  1    MPKPVSLTHGYLGTVDYSAFMPRPAGRSPSFFQDLLSADPHPRDPVLSVTPYFHIMGLVS  60
             PK V LTH  L     S    RP G               P D VLS  P FH  GL  
Sbjct  169  KPKGVMLTHRNLVANVLSIKRVRPRGF-----------GLGPDDRVLSTLPLFHDFGLSL  217

Query  61   F-FVSIFHNIPFVTIS-DQPLSVSLLVDIIRATHPTATILPPSILED-MSLSQEALECLG  117
                 +      V       L  + L+++I     T     P++L   +         L 
Sbjct  218  GLLGPLLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLS  277

Query  118  TLKFVCYGGAPLAKQVGDKVSQYT--QLRNAIGSTEIGIIGSLVPEGKENWGYFEWNPAY  175
            +L+ V  GGAPL  ++  +  +     L N  G TE   + +      E+        + 
Sbjct  278  SLRLVLSGGAPLPPELARRFRELFGGALVNGYGLTETTGVVTTPLPLDEDLRSL---GSV  334

Query  176  GI-------------DMQPVADDVY-ELVI--PRLEDSRRMHGIFH----TFPSFKE---  212
            G                +PV      EL +  P +     M G  +    T  +F E   
Sbjct  335  GRPLPGTEVKIVDDETGEPVPPGEPGELCVRGPGV-----MKGYLNDPELTAEAFDEDGW  389

Query  213  YRSKDLYVRHPK--IPKLWQYRGRLDDVIVLS  242
            YR+ DL  R     +    +  GR  D I L 
Sbjct  390  YRTGDLGRRDEDGYL----EIVGRKKDQIKLG  417



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1109652322


Query= TCONS_00021141

Length=1061
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  130     3e-34
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 121     1e-29


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 130 bits (329),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 69/259 (27%), Positives = 112/259 (43%), Gaps = 17/259 (7%)

Query  695  LTGSTGSLGTYILSGLLND-PHVAKVYCFNRA---ADAATRQRQGFAEKGL-DASLLEDP  749
            LTG+TG LG  +L  LL   P V K+Y   RA     A  R RQ   +  L DA L E  
Sbjct  1    LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  750  SKVEFLHVSFGDKHFGLDDSMYSKLLDTVDLIVHNAWKVNFNHPVSSFEDPHIKGVREFV  809
             ++  +     + + GL +  + +L + VD+I+H+A  VNF  P       ++ G RE +
Sbjct  61   ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  810  NFSLEARYNTHLAFVSS--VSTIAGWTPSSDESAVPELPMDTVDAVLKQ------GYGES  861
              + + +       VS+  V+   G           E  M   +           GY ++
Sbjct  121  RLAKQGKQLKPFHHVSTAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQT  180

Query  862  KHVGERICLEASRTSGVPTSVLRVGQIAGPDSRLGLWNPHEWLPSVVKTSKSMGKVPDTL  921
            K + E++  EA+R  G+P  + R   I G + + G  N  ++ P  +      G +P  L
Sbjct  181  KWLAEQLVREAAR-RGLPVVIYRPSIITG-EPKTGWINNFDFGPRGLLGGIGKGVLPSIL  238

Query  922  G--SVLVDWIAVDTLAKIT  938
            G    ++D + VD +A   
Sbjct  239  GDPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 121 bits (305),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 95/428 (22%), Positives = 142/428 (33%), Gaps = 61/428 (14%)

Query  44   VHQGFREVTFRDLCCAVNRMSWWMEKHLASSVKGATIAYLGSNDIRYIILMLASHKTGCT  103
                 R +T+R+L    NR++  +        KG  +A L  N   +++  LA  K G  
Sbjct  15   EVGEGRRLTYRELDERANRLAAGLRALGVG--KGDRVAILLPNSPEWVVAFLACLKAGAV  72

Query  104  IFFPSTRLSNEAYDSVFGATQTKMLLFSPEK-----HPLVSGLTGPSKAISSLEVPSVPE  158
                + RL  E    +   +  K+L+             +  L      +     P + E
Sbjct  73   YVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVLDRDPVLKE  132

Query  159  MLNDNPDVKNYPFTSTFEEF-EDKTAFIIHSSGTTGMPKPVSLTHGYLGTVDYSAFMPRP  217
                                  D  A+II++SGTTG PK V LTH  L     S    RP
Sbjct  133  EPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKRVRP  192

Query  218  AGRSPSFFQDLLSADPHPRDPVLSVTPYFHIMGLVSF-FVSIFHNIPFVTIS-DQPLSVS  275
             G               P D VLS  P FH  GL       +      V       L  +
Sbjct  193  RGF-----------GLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPA  241

Query  276  LLVDIIRATHPTATILPPSILED-MSLSQEALECLGTLKFVCYGGAPLAKQVGDKVSQYT  334
             L+++I     T     P++L   +         L +L+ V  GGAPL  ++  +  +  
Sbjct  242  ALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFRELF  301

Query  335  --QLRNAIGSTEIGIIGSLVPEGKENWGYFEWNPAYGI-------------DMQPVADDV  379
               L N  G TE   + +      E+        + G                +PV    
Sbjct  302  GGALVNGYGLTETTGVVTTPLPLDEDLRSL---GSVGRPLPGTEVKIVDDETGEPVPPGE  358

Query  380  Y-ELVI--PRLEDSRRMHGIFH----TFPSFKE---YRSKDLYVRHPK--IPKLWQYRGR  427
              EL +  P +     M G  +    T  +F E   YR+ DL  R     +    +  GR
Sbjct  359  PGELCVRGPGV-----MKGYLNDPELTAEAFDEDGWYRTGDLGRRDEDGYL----EIVGR  409

Query  428  LDDVIVLS  435
              D I L 
Sbjct  410  KKDQIKLG  417



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1366320340


Query= TCONS_00026421

Length=935
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  130     2e-34
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 103     6e-24


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 130 bits (329),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 69/259 (27%), Positives = 112/259 (43%), Gaps = 17/259 (7%)

Query  569  LTGSTGSLGTYILSGLLND-PHVAKVYCFNRA---ADAATRQRQGFAEKGL-DASLLEDP  623
            LTG+TG LG  +L  LL   P V K+Y   RA     A  R RQ   +  L DA L E  
Sbjct  1    LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  624  SKVEFLHVSFGDKHFGLDDSMYSKLLDTVDLIVHNAWKVNFNHPVSSFEDPHIKGVREFV  683
             ++  +     + + GL +  + +L + VD+I+H+A  VNF  P       ++ G RE +
Sbjct  61   ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  684  NFSLEARYNTHLAFVSS--VSTIAGWTPSSDESAVPELPMDTVDAVLKQ------GYGES  735
              + + +       VS+  V+   G           E  M   +           GY ++
Sbjct  121  RLAKQGKQLKPFHHVSTAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQT  180

Query  736  KHVGERICLEASRTSGVPTSVLRVGQIAGPDSRLGLWNPHEWLPSVVKTSKSMGKVPDTL  795
            K + E++  EA+R  G+P  + R   I G + + G  N  ++ P  +      G +P  L
Sbjct  181  KWLAEQLVREAAR-RGLPVVIYRPSIITG-EPKTGWINNFDFGPRGLLGGIGKGVLPSIL  238

Query  796  G--SVLVDWIAVDTLAKIT  812
            G    ++D + VD +A   
Sbjct  239  GDPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 103 bits (260),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 101/287 (35%), Gaps = 53/287 (18%)

Query  53   EDKTAFIIHSSGTTGMPKPVSLTHGYLGTVDYSAFMPRPAGRSPSFFQDLLSADPHPRDP  112
             D  A+II++SGTTG PK V LTH  L     S    RP G               P D 
Sbjct  154  PDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGF-----------GLGPDDR  202

Query  113  VLSVTPYFHIMGLVSF-FVSIFHNIPFVTIS-DQPLSVSLLVDIIRATHPTATILPPSIL  170
            VLS  P FH  GL       +      V       L  + L+++I     T     P++L
Sbjct  203  VLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLL  262

Query  171  ED-MSLSQEALECLGTLKFVCYGGAPLAKQVGDKVSQYT--QLRNAIGSTEIGIIGSLVP  227
               +         L +L+ V  GGAPL  ++  +  +     L N  G TE   + +   
Sbjct  263  NMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFRELFGGALVNGYGLTETTGVVTTPL  322

Query  228  EGKENWGYFEWNPAYGI-------------DMQPVADDVY-ELVI--PRLEDSRRMHGIF  271
               E+        + G                +PV      EL +  P +     M G  
Sbjct  323  PLDEDLRSL---GSVGRPLPGTEVKIVDDETGEPVPPGEPGELCVRGPGV-----MKGYL  374

Query  272  H----TFPSFKE---YRSKDLYVRHPK--IPKLWQYRGRLDDVIVLS  309
            +    T  +F E   YR+ DL  R     +    +  GR  D I L 
Sbjct  375  NDPELTAEAFDEDGWYRTGDLGRRDEDGYL----EIVGRKKDQIKLG  417



Lambda      K        H        a         alpha
   0.317    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1205831760


Query= TCONS_00021142

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00021143

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00026422

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00021144

Length=460


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00021146

Length=208


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00021145

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00026423

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00021147

Length=256


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00026424

Length=432


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00021149

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00021148

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00021150

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00021151

Length=466


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0754    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00021152

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.128    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00021153

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00026426

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00021154

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00026427

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            65.1    5e-12


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 65.1 bits (159),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 54/318 (17%), Positives = 96/318 (30%), Gaps = 63/318 (20%)

Query  1    MFIVGRVIAGVGSAGVANGAVTTISAVLPTKKQALFMGLNVGMGQLGLATGPIIGGAFTT  60
            + +V RV+ G+G+  +   A+  I+   P +++   +GL      LG A GP++GG   +
Sbjct  87   LLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLAS  146

Query  61   KVSWRWCFYINLPLGVVVGGFLLFNTIPEPKPKSPPLEILGTAIKSLDLPGFMLICPAVV  120
               WR  F I   L ++    LL    P    +  P E                      
Sbjct  147  LFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAE----------------------  184

Query  121  MFLLGLQFGGNQHPWNSSVVIGLLVGAAVTFGLFLVWEHRRGDKAMVPFAMVKHRVIWST  180
                                            L + W+    D  +              
Sbjct  185  ---------------------------EARLSLIVAWKALLRDPVLW-------------  204

Query  181  AMTMFFTLSSVLVADFYIAIYFQAIRDDSPLMSGVHMLPITLGLVLFTVVSGALISILGY  240
             +                   +Q +   S L++G+ +    L   +  ++ G L   LG 
Sbjct  205  LLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGR  264

Query  241  YLPFLLAGGAISAVGYGLLSTLSPTTSVAKWIGYQILYGVASGCTTAAPYIAIQNLVSPA  300
                LLA   +     GLL      +S+   +   +L G   G    A    + +L    
Sbjct  265  RRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-LLLGFGFGLVFPALNALVSDLAPKE  323

Query  301  QIPQAMAIIIFWQNIGAA  318
            +   A  +     ++G A
Sbjct  324  ERGTASGLYNTAGSLGGA  341



Lambda      K        H        a         alpha
   0.325    0.140    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00026428

Length=1250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  153     7e-42
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  143     3e-40


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 153 bits (388),  Expect = 7e-42, Method: Composition-based stats.
 Identities = 78/280 (28%), Positives = 140/280 (50%), Gaps = 9/280 (3%)

Query  23   CIAFIAAIASGTALAMVNLVMGQFLTLLSDFSFSDMDSTPTNFMSAVRTSALYFIYIGVI  82
             +A + AI SG       LV+G+ L +L      D ++   N  S      L  + +G+ 
Sbjct  2    ILAILLAILSGAISPAFPLVLGRILDVLLPDG--DPETQALNVYS------LALLLLGLA  53

Query  83   RLLATYLYAALFTYVAYHLTRNIRRNYLRAAFSQEISYYDQGTSGSISQQATTNGNLIQS  142
            + + ++L + L  +    L+R +RR   +    Q +S++D  + G +  + T + + I+ 
Sbjct  54   QFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRD  113

Query  143  GIAEKLGIVIQAVSTFVATLVIAFVTQWKLTLILIFMVPTLLIVLGTAGGIDAMIETKIL  202
            G+ EKLG++ Q+++T V  +++ F   WKLTL+L+ ++P  ++V      I   +  K  
Sbjct  114  GLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQ  173

Query  203  QIHAQAGSYAESVLGGVRTVQAFSLRPRVIAKFDSYLQEAYSQGMRKNKLYGIVFGGQYF  262
            +  A+A S AE  L G+RTV+AF      + K+D  L+EA   G++K    G+ FG   F
Sbjct  174  KAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQF  233

Query  263  VVHAGMGLAFWQGIAMLDRGEI-ADLGTVFVVLFSIIMAA  301
            + +    LA W G  ++  GE+       F+ LF+ +   
Sbjct  234  IGYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273


 Score = 138 bits (349),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 125/266 (47%), Gaps = 7/266 (3%)

Query  682  IGGAAVNPGQALLLGNILSVFTSPNMVA--RGNFIALMFFVMSLGILVIYFIMGWSTNTI  739
            I   A++P   L+LG IL V            N  +L   ++ L   ++ F+  +  N  
Sbjct  9    ILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQSYLLNHT  68

Query  740  AQTLSRKLRREILDAFLRQDLRFFDRPENTVGALTSRLDSYPQAILELMGLTVAIILMSA  799
             + LSR+LRR++    LRQ + FFD   N+VG L SRL +    I + +G  + ++  S 
Sbjct  69   GERLSRRLRRKLFKKILRQPMSFFDT--NSVGELLSRLTNDTSKIRDGLGEKLGLLFQSL  126

Query  800  INIVASSVLAIAVSWKLGVIGVFVGLPPIMLGGYARVRLETKMDDEIGQRLSVSASIASE  859
              IV   ++     WKL ++ + V LP  +L      ++  K+  +  + ++ ++S+A E
Sbjct  127  ATIVGGIIVMFYYGWKLTLVLLAV-LPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEE  185

Query  860  TVMAIRTVASLALENTVLKNYTDELDRAIIQASGPMFHMMIWFSLTQSVEYFVLALGFWW  919
            ++  IRTV +   E   L+ Y   L+ A+           + F +TQ + Y   AL  W+
Sbjct  186  SLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWF  245

Query  920  GSKLINDGEITLYQFVV--SFMGVYF  943
            G+ L+  GE+++   V   S     F
Sbjct  246  GAYLVISGELSVGDLVAFLSLFAQLF  271


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 143 bits (364),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 65/162 (40%), Positives = 98/162 (60%), Gaps = 15/162 (9%)

Query  369  LEDFTLHIPAGKVTALVGPSGSGKSTIIGLLERWYSPCSGSISLDGKDISHLNLKWLRTN  428
            L++ +L +  G++ ALVGP+G+GKST++ L+    SP  G+I LDG+D++    K LR  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  429  VRLVQQEPVLFNA-SVFDNIANGLVGTPWETASHDDQMKLVQEAAKLAFAHDFIENLPQG  487
            +  V Q+P LF   +V +N+  GL             +K + +  K A A + +E L  G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------LLKGLSKREKDARAEEALEKLGLG  108

Query  488  Y--HTRIGERGGLLSGGQRQRIAIARSVISGPKILLLDEATS  527
                  +GER G LSGGQRQR+AIAR++++ PK+LLLDE T+
Sbjct  109  DLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 139 bits (353),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 62/160 (39%), Positives = 87/160 (54%), Gaps = 11/160 (7%)

Query  1014  LKGVSLSIQRGDFVGFVGASGCGKSTMISLLERFYDPTDGTITIDSSAPLSFLNPLLYRR  1073
             LK VSL++  G+ +  VG +G GKST++ L+     PT+GTI +D    L+       R+
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQ-DLTDDERKSLRK  59

Query  1074  HVALVQQEPTLFPG-TIRENISQGMPGLSATEAASDDALEEACRAANAWDFVSSLPEGLD  1132
              +  V Q+P LFP  T+REN+  G+     ++   D   EEA       D         D
Sbjct  60    EIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL-------AD  112

Query  1133  TQCGTASGSQLLSGGQRQRIAIARALVRNPRVLLLDEATS  1172
                G   G+  LSGGQRQR+AIARAL+  P++LLLDE T+
Sbjct  113   RPVGERPGT--LSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.321    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1585843200


Query= TCONS_00026429

Length=1280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  155     2e-42
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  143     3e-40


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 155 bits (393),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 78/280 (28%), Positives = 140/280 (50%), Gaps = 9/280 (3%)

Query  59   CIAFIAAIASGTALAMVNLVMGQFLTLLSDFSFSDMDSTPTNFMSAVRTSALYFIYIGVI  118
             +A + AI SG       LV+G+ L +L      D ++   N  S      L  + +G+ 
Sbjct  2    ILAILLAILSGAISPAFPLVLGRILDVLLPDG--DPETQALNVYS------LALLLLGLA  53

Query  119  RLLATYLYAALFTYVAYHLTRNIRRNYLRAAFSQEISYYDQGTSGSISQQATTNGNLIQS  178
            + + ++L + L  +    L+R +RR   +    Q +S++D  + G +  + T + + I+ 
Sbjct  54   QFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRD  113

Query  179  GIAEKLGIVIQAVSTFVATLVIAFVTQWKLTLILIFMVPTLLIVLGTAGGIDAMIETKIL  238
            G+ EKLG++ Q+++T V  +++ F   WKLTL+L+ ++P  ++V      I   +  K  
Sbjct  114  GLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQ  173

Query  239  QIHAQAGSYAESVLGGVRTVQAFSLRPRVIAKFDSYLQEAYSQGMRKNKLYGIVFGGQYF  298
            +  A+A S AE  L G+RTV+AF      + K+D  L+EA   G++K    G+ FG   F
Sbjct  174  KAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQF  233

Query  299  VVHAGMGLAFWQGIAMLDRGEI-ADLGTVFVVLFSIIMAA  337
            + +    LA W G  ++  GE+       F+ LF+ +   
Sbjct  234  IGYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273


 Score = 140 bits (354),  Expect = 3e-37, Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 125/266 (47%), Gaps = 7/266 (3%)

Query  718  IGGAAVNPGQALLLGNILSVFTSPNMVA--RGNFIALMFFVMSLGILVIYFIMGWSTNTI  775
            I   A++P   L+LG IL V            N  +L   ++ L   ++ F+  +  N  
Sbjct  9    ILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQSYLLNHT  68

Query  776  AQTLSRKLRREILDAFLRQDLRFFDRPENTVGALTSRLDSYPQAILELMGLTVAIILMSA  835
             + LSR+LRR++    LRQ + FFD   N+VG L SRL +    I + +G  + ++  S 
Sbjct  69   GERLSRRLRRKLFKKILRQPMSFFDT--NSVGELLSRLTNDTSKIRDGLGEKLGLLFQSL  126

Query  836  INIVASSVLAIAVSWKLGVIGVFVGLPPIMLGGYARVRLETKMDDEIGQRLSVSASIASE  895
              IV   ++     WKL ++ + V LP  +L      ++  K+  +  + ++ ++S+A E
Sbjct  127  ATIVGGIIVMFYYGWKLTLVLLAV-LPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEE  185

Query  896  TVMAIRTVASLALENTVLKNYTDELDRAIIQASGPMFHMMIWFSLTQSVEYFVLALGFWW  955
            ++  IRTV +   E   L+ Y   L+ A+           + F +TQ + Y   AL  W+
Sbjct  186  SLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWF  245

Query  956  GSKLINDGEITLYQFVV--SFMGVYF  979
            G+ L+  GE+++   V   S     F
Sbjct  246  GAYLVISGELSVGDLVAFLSLFAQLF  271


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 143 bits (364),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 65/162 (40%), Positives = 98/162 (60%), Gaps = 15/162 (9%)

Query  405  LEDFTLHIPAGKVTALVGPSGSGKSTIIGLLERWYSPCSGSISLDGKDISHLNLKWLRTN  464
            L++ +L +  G++ ALVGP+G+GKST++ L+    SP  G+I LDG+D++    K LR  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  465  VRLVQQEPVLFNA-SVFDNIANGLVGTPWETASHDDQMKLVQEAAKLAFAHDFIENLPQG  523
            +  V Q+P LF   +V +N+  GL             +K + +  K A A + +E L  G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------LLKGLSKREKDARAEEALEKLGLG  108

Query  524  Y--HTRIGERGGLLSGGQRQRIAIARSVISGPKILLLDEATS  563
                  +GER G LSGGQRQR+AIAR++++ PK+LLLDE T+
Sbjct  109  DLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 139 bits (353),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 62/160 (39%), Positives = 87/160 (54%), Gaps = 11/160 (7%)

Query  1044  LKGVSLSIQRGDFVGFVGASGCGKSTMISLLERFYDPTDGTITIDSSAPLSFLNPLLYRR  1103
             LK VSL++  G+ +  VG +G GKST++ L+     PT+GTI +D    L+       R+
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQ-DLTDDERKSLRK  59

Query  1104  HVALVQQEPTLFPG-TIRENISQGMPGLSATEAASDDALEEACRAANAWDFVSSLPEGLD  1162
              +  V Q+P LFP  T+REN+  G+     ++   D   EEA       D         D
Sbjct  60    EIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL-------AD  112

Query  1163  TQCGTASGSQLLSGGQRQRIAIARALVRNPRVLLLDEATS  1202
                G   G+  LSGGQRQR+AIARAL+  P++LLLDE T+
Sbjct  113   RPVGERPGT--LSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.321    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1627141200


Query= TCONS_00021156

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  140     1e-38
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  70.4    6e-15


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 140 bits (356),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 125/266 (47%), Gaps = 7/266 (3%)

Query  218  IGGAAVNPGQALLLGNILSVFTSPNMVA--RGNFIALMFFVMSLGILVIYFIMGWSTNTI  275
            I   A++P   L+LG IL V            N  +L   ++ L   ++ F+  +  N  
Sbjct  9    ILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQSYLLNHT  68

Query  276  AQTLSRKLRREILDAFLRQDLRFFDRPENTVGALTSRLDSYPQAILELMGLTVAIILMSA  335
             + LSR+LRR++    LRQ + FFD   N+VG L SRL +    I + +G  + ++  S 
Sbjct  69   GERLSRRLRRKLFKKILRQPMSFFDT--NSVGELLSRLTNDTSKIRDGLGEKLGLLFQSL  126

Query  336  INIVASSVLAIAVSWKLGVIGVFVGLPPIMLGGYARVRLETKMDDEIGQRLSVSASIASE  395
              IV   ++     WKL ++ + V LP  +L      ++  K+  +  + ++ ++S+A E
Sbjct  127  ATIVGGIIVMFYYGWKLTLVLLAV-LPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEE  185

Query  396  TVMAIRTVASLALENTVLKNYTDELDRAIIQASGPMFHMMIWFSLTQSVEYFVLALGFWW  455
            ++  IRTV +   E   L+ Y   L+ A+           + F +TQ + Y   AL  W+
Sbjct  186  SLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWF  245

Query  456  GSKLINDGEITLYQFVV--SFMGVYF  479
            G+ L+  GE+++   V   S     F
Sbjct  246  GAYLVISGELSVGDLVAFLSLFAQLF  271


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 70.4 bits (173),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 31/65 (48%), Positives = 44/65 (68%), Gaps = 2/65 (3%)

Query  1    MKLVQEAAKLAFAHDFIENLPQGY--HTRIGERGGLLSGGQRQRIAIARSVISGPKILLL  58
            +K + +  K A A + +E L  G      +GER G LSGGQRQR+AIAR++++ PK+LLL
Sbjct  86   LKGLSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLL  145

Query  59   DEATS  63
            DE T+
Sbjct  146  DEPTA  150



Lambda      K        H        a         alpha
   0.321    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690425736


Query= TCONS_00021157

Length=1244
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  153     7e-42
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  139     1e-38


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 153 bits (388),  Expect = 7e-42, Method: Composition-based stats.
 Identities = 78/280 (28%), Positives = 140/280 (50%), Gaps = 9/280 (3%)

Query  23   CIAFIAAIASGTALAMVNLVMGQFLTLLSDFSFSDMDSTPTNFMSAVRTSALYFIYIGVI  82
             +A + AI SG       LV+G+ L +L      D ++   N  S      L  + +G+ 
Sbjct  2    ILAILLAILSGAISPAFPLVLGRILDVLLPDG--DPETQALNVYS------LALLLLGLA  53

Query  83   RLLATYLYAALFTYVAYHLTRNIRRNYLRAAFSQEISYYDQGTSGSISQQATTNGNLIQS  142
            + + ++L + L  +    L+R +RR   +    Q +S++D  + G +  + T + + I+ 
Sbjct  54   QFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRD  113

Query  143  GIAEKLGIVIQAVSTFVATLVIAFVTQWKLTLILIFMVPTLLIVLGTAGGIDAMIETKIL  202
            G+ EKLG++ Q+++T V  +++ F   WKLTL+L+ ++P  ++V      I   +  K  
Sbjct  114  GLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQ  173

Query  203  QIHAQAGSYAESVLGGVRTVQAFSLRPRVIAKFDSYLQEAYSQGMRKNKLYGIVFGGQYF  262
            +  A+A S AE  L G+RTV+AF      + K+D  L+EA   G++K    G+ FG   F
Sbjct  174  KAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQF  233

Query  263  VVHAGMGLAFWQGIAMLDRGEI-ADLGTVFVVLFSIIMAA  301
            + +    LA W G  ++  GE+       F+ LF+ +   
Sbjct  234  IGYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273


 Score = 138 bits (349),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 125/266 (47%), Gaps = 7/266 (3%)

Query  676  IGGAAVNPGQALLLGNILSVFTSPNMVA--RGNFIALMFFVMSLGILVIYFIMGWSTNTI  733
            I   A++P   L+LG IL V            N  +L   ++ L   ++ F+  +  N  
Sbjct  9    ILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQSYLLNHT  68

Query  734  AQTLSRKLRREILDAFLRQDLRFFDRPENTVGALTSRLDSYPQAILELMGLTVAIILMSA  793
             + LSR+LRR++    LRQ + FFD   N+VG L SRL +    I + +G  + ++  S 
Sbjct  69   GERLSRRLRRKLFKKILRQPMSFFDT--NSVGELLSRLTNDTSKIRDGLGEKLGLLFQSL  126

Query  794  INIVASSVLAIAVSWKLGVIGVFVGLPPIMLGGYARVRLETKMDDEIGQRLSVSASIASE  853
              IV   ++     WKL ++ + V LP  +L      ++  K+  +  + ++ ++S+A E
Sbjct  127  ATIVGGIIVMFYYGWKLTLVLLAV-LPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEE  185

Query  854  TVMAIRTVASLALENTVLKNYTDELDRAIIQASGPMFHMMIWFSLTQSVEYFVLALGFWW  913
            ++  IRTV +   E   L+ Y   L+ A+           + F +TQ + Y   AL  W+
Sbjct  186  SLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWF  245

Query  914  GSKLINDGEITLYQFVV--SFMGVYF  937
            G+ L+  GE+++   V   S     F
Sbjct  246  GAYLVISGELSVGDLVAFLSLFAQLF  271


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 139 bits (353),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 62/160 (39%), Positives = 87/160 (54%), Gaps = 11/160 (7%)

Query  1008  LKGVSLSIQRGDFVGFVGASGCGKSTMISLLERFYDPTDGTITIDSSAPLSFLNPLLYRR  1067
             LK VSL++  G+ +  VG +G GKST++ L+     PT+GTI +D    L+       R+
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQ-DLTDDERKSLRK  59

Query  1068  HVALVQQEPTLFPG-TIRENISQGMPGLSATEAASDDALEEACRAANAWDFVSSLPEGLD  1126
              +  V Q+P LFP  T+REN+  G+     ++   D   EEA       D         D
Sbjct  60    EIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL-------AD  112

Query  1127  TQCGTASGSQLLSGGQRQRIAIARALVRNPRVLLLDEATS  1166
                G   G+  LSGGQRQR+AIARAL+  P++LLLDE T+
Sbjct  113   RPVGERPGT--LSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 133 bits (337),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 63/162 (39%), Positives = 95/162 (59%), Gaps = 21/162 (13%)

Query  369  LEDFTLHIPAGKVTALVGPSGSGKSTIIGLLERWYSPCSGSISLDGKDISHLNLKWLRTN  428
            L++ +L +  G++ ALVGP+G+GKST++ L+    SP  G+I LDG+D++    K LR  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  429  ------EPVLFNA-SVFDNIANGLVGTPWETASHDDQMKLVQEAAKLAFAHDFIENLPQG  481
                  +P LF   +V +N+  GL             +K + +  K A A + +E L  G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------LLKGLSKREKDARAEEALEKLGLG  108

Query  482  Y--HTRIGERGGLLSGGQRQRIAIARSVISGPKILLLDEATS  521
                  +GER G LSGGQRQR+AIAR++++ PK+LLLDE T+
Sbjct  109  DLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.321    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1601484986


Query= TCONS_00026430

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  122     2e-32
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  69.6    8e-15


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 122 bits (308),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 112/239 (47%), Gaps = 5/239 (2%)

Query  218  IGGAAVNPGQALLLGNILSVFTSPNMVA--RGNFIALMFFVMSLGILVIYFIMGWSTNTI  275
            I   A++P   L+LG IL V            N  +L   ++ L   ++ F+  +  N  
Sbjct  9    ILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQSYLLNHT  68

Query  276  AQTLSRKLRREILDAFLRQDLRFFDRPENTVGALTSRLDSYPQAILELMGLTVAIILMSA  335
             + LSR+LRR++    LRQ + FFD   N+VG L SRL +    I + +G  + ++  S 
Sbjct  69   GERLSRRLRRKLFKKILRQPMSFFDT--NSVGELLSRLTNDTSKIRDGLGEKLGLLFQSL  126

Query  336  INIVASSVLAIAVSWKLGVIGVFVGLPPIMLGGYARVRLETKMDDEIGQRLSVSASIASE  395
              IV   ++     WKL ++ + V LP  +L      ++  K+  +  + ++ ++S+A E
Sbjct  127  ATIVGGIIVMFYYGWKLTLVLLAV-LPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEE  185

Query  396  TVMAIRTVASLALENTVLKNYTDELDRAIIQASGPMFHMMIWFSLTQSVEYFVLALGFW  454
            ++  IRTV +   E   L+ Y   L+ A+           + F +TQ + Y   AL  W
Sbjct  186  SLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALW  244


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 69.6 bits (171),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 31/65 (48%), Positives = 44/65 (68%), Gaps = 2/65 (3%)

Query  1    MKLVQEAAKLAFAHDFIENLPQGY--HTRIGERGGLLSGGQRQRIAIARSVISGPKILLL  58
            +K + +  K A A + +E L  G      +GER G LSGGQRQR+AIAR++++ PK+LLL
Sbjct  86   LKGLSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLL  145

Query  59   DEATS  63
            DE T+
Sbjct  146  DEPTA  150



Lambda      K        H        a         alpha
   0.322    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 558268256


Query= TCONS_00021158

Length=1066
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  150     3e-41
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  144     2e-40


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 150 bits (382),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 78/280 (28%), Positives = 140/280 (50%), Gaps = 9/280 (3%)

Query  69   CIAFIAAIASGTALAMVNLVMGQFLTLLSDFSFSDMDSTPTNFMSAVRTSALYFIYIGVI  128
             +A + AI SG       LV+G+ L +L      D ++   N  S      L  + +G+ 
Sbjct  2    ILAILLAILSGAISPAFPLVLGRILDVLLPDG--DPETQALNVYS------LALLLLGLA  53

Query  129  RLLATYLYAALFTYVAYHLTRNIRRNYLRAAFSQEISYYDQGTSGSISQQATTNGNLIQS  188
            + + ++L + L  +    L+R +RR   +    Q +S++D  + G +  + T + + I+ 
Sbjct  54   QFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRD  113

Query  189  GIAEKLGIVIQAVSTFVATLVIAFVTQWKLTLILIFMVPTLLIVLGTAGGIDAMIETKIL  248
            G+ EKLG++ Q+++T V  +++ F   WKLTL+L+ ++P  ++V      I   +  K  
Sbjct  114  GLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQ  173

Query  249  QIHAQAGSYAESVLGGVRTVQAFSLRPRVIAKFDSYLQEAYSQGMRKNKLYGIVFGGQYF  308
            +  A+A S AE  L G+RTV+AF      + K+D  L+EA   G++K    G+ FG   F
Sbjct  174  KAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQF  233

Query  309  VVHAGMGLAFWQGIAMLDRGEI-ADLGTVFVVLFSIIMAA  347
            + +    LA W G  ++  GE+       F+ LF+ +   
Sbjct  234  IGYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273


 Score = 135 bits (343),  Expect = 5e-36, Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 125/266 (47%), Gaps = 7/266 (3%)

Query  728  IGGAAVNPGQALLLGNILSVFTSPNMVA--RGNFIALMFFVMSLGILVIYFIMGWSTNTI  785
            I   A++P   L+LG IL V            N  +L   ++ L   ++ F+  +  N  
Sbjct  9    ILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQSYLLNHT  68

Query  786  AQTLSRKLRREILDAFLRQDLRFFDRPENTVGALTSRLDSYPQAILELMGLTVAIILMSA  845
             + LSR+LRR++    LRQ + FFD   N+VG L SRL +    I + +G  + ++  S 
Sbjct  69   GERLSRRLRRKLFKKILRQPMSFFDT--NSVGELLSRLTNDTSKIRDGLGEKLGLLFQSL  126

Query  846  INIVASSVLAIAVSWKLGVIGVFVGLPPIMLGGYARVRLETKMDDEIGQRLSVSASIASE  905
              IV   ++     WKL ++ + V LP  +L      ++  K+  +  + ++ ++S+A E
Sbjct  127  ATIVGGIIVMFYYGWKLTLVLLAV-LPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEE  185

Query  906  TVMAIRTVASLALENTVLKNYTDELDRAIIQASGPMFHMMIWFSLTQSVEYFVLALGFWW  965
            ++  IRTV +   E   L+ Y   L+ A+           + F +TQ + Y   AL  W+
Sbjct  186  SLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWF  245

Query  966  GSKLINDGEITLYQFVV--SFMGVYF  989
            G+ L+  GE+++   V   S     F
Sbjct  246  GAYLVISGELSVGDLVAFLSLFAQLF  271


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 144 bits (365),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 65/162 (40%), Positives = 98/162 (60%), Gaps = 15/162 (9%)

Query  415  LEDFTLHIPAGKVTALVGPSGSGKSTIIGLLERWYSPCSGSISLDGKDISHLNLKWLRTN  474
            L++ +L +  G++ ALVGP+G+GKST++ L+    SP  G+I LDG+D++    K LR  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  475  VRLVQQEPVLFNA-SVFDNIANGLVGTPWETASHDDQMKLVQEAAKLAFAHDFIENLPQG  533
            +  V Q+P LF   +V +N+  GL             +K + +  K A A + +E L  G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------LLKGLSKREKDARAEEALEKLGLG  108

Query  534  Y--HTRIGERGGLLSGGQRQRIAIARSVISGPKILLLDEATS  573
                  +GER G LSGGQRQR+AIAR++++ PK+LLLDE T+
Sbjct  109  DLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.322    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1373399720


Query= TCONS_00021159

Length=912
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  148     2e-40
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  132     2e-36


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 148 bits (376),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 78/280 (28%), Positives = 140/280 (50%), Gaps = 9/280 (3%)

Query  23   CIAFIAAIASGTALAMVNLVMGQFLTLLSDFSFSDMDSTPTNFMSAVRTSALYFIYIGVI  82
             +A + AI SG       LV+G+ L +L      D ++   N  S      L  + +G+ 
Sbjct  2    ILAILLAILSGAISPAFPLVLGRILDVLLPDG--DPETQALNVYS------LALLLLGLA  53

Query  83   RLLATYLYAALFTYVAYHLTRNIRRNYLRAAFSQEISYYDQGTSGSISQQATTNGNLIQS  142
            + + ++L + L  +    L+R +RR   +    Q +S++D  + G +  + T + + I+ 
Sbjct  54   QFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRD  113

Query  143  GIAEKLGIVIQAVSTFVATLVIAFVTQWKLTLILIFMVPTLLIVLGTAGGIDAMIETKIL  202
            G+ EKLG++ Q+++T V  +++ F   WKLTL+L+ ++P  ++V      I   +  K  
Sbjct  114  GLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQ  173

Query  203  QIHAQAGSYAESVLGGVRTVQAFSLRPRVIAKFDSYLQEAYSQGMRKNKLYGIVFGGQYF  262
            +  A+A S AE  L G+RTV+AF      + K+D  L+EA   G++K    G+ FG   F
Sbjct  174  KAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQF  233

Query  263  VVHAGMGLAFWQGIAMLDRGEI-ADLGTVFVVLFSIIMAA  301
            + +    LA W G  ++  GE+       F+ LF+ +   
Sbjct  234  IGYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273


 Score = 116 bits (292),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 64/238 (27%), Positives = 111/238 (47%), Gaps = 5/238 (2%)

Query  676  IGGAAVNPGQALLLGNILSVFTSPNMVA--RGNFIALMFFVMSLGILVIYFIMGWSTNTI  733
            I   A++P   L+LG IL V            N  +L   ++ L   ++ F+  +  N  
Sbjct  9    ILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQSYLLNHT  68

Query  734  AQTLSRKLRREILDAFLRQDLRFFDRPENTVGALTSRLDSYPQAILELMGLTVAIILMSA  793
             + LSR+LRR++    LRQ + FFD   N+VG L SRL +    I + +G  + ++  S 
Sbjct  69   GERLSRRLRRKLFKKILRQPMSFFDT--NSVGELLSRLTNDTSKIRDGLGEKLGLLFQSL  126

Query  794  INIVASSVLAIAVSWKLGVIGVFVGLPPIMLGGYARVRLETKMDDEIGQRLSVSASIASE  853
              IV   ++     WKL ++ + V LP  +L      ++  K+  +  + ++ ++S+A E
Sbjct  127  ATIVGGIIVMFYYGWKLTLVLLAV-LPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEE  185

Query  854  TVMAIRTVASLALENTVLKNYTDELDRAIIQASGPMFHMMIWFSLTQSVEYFVLALGF  911
            ++  IRTV +   E   L+ Y   L+ A+           + F +TQ + Y   AL  
Sbjct  186  SLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALAL  243


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 132 bits (335),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 63/162 (39%), Positives = 95/162 (59%), Gaps = 21/162 (13%)

Query  369  LEDFTLHIPAGKVTALVGPSGSGKSTIIGLLERWYSPCSGSISLDGKDISHLNLKWLRTN  428
            L++ +L +  G++ ALVGP+G+GKST++ L+    SP  G+I LDG+D++    K LR  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  429  ------EPVLFNA-SVFDNIANGLVGTPWETASHDDQMKLVQEAAKLAFAHDFIENLPQG  481
                  +P LF   +V +N+  GL             +K + +  K A A + +E L  G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------LLKGLSKREKDARAEEALEKLGLG  108

Query  482  Y--HTRIGERGGLLSGGQRQRIAIARSVISGPKILLLDEATS  521
                  +GER G LSGGQRQR+AIAR++++ PK+LLLDE T+
Sbjct  109  DLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.323    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1172814938


Query= TCONS_00021160

Length=503
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  137     1e-37
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  70.4    6e-15


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 137 bits (347),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 125/266 (47%), Gaps = 7/266 (3%)

Query  218  IGGAAVNPGQALLLGNILSVFTSPNMVA--RGNFIALMFFVMSLGILVIYFIMGWSTNTI  275
            I   A++P   L+LG IL V            N  +L   ++ L   ++ F+  +  N  
Sbjct  9    ILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQSYLLNHT  68

Query  276  AQTLSRKLRREILDAFLRQDLRFFDRPENTVGALTSRLDSYPQAILELMGLTVAIILMSA  335
             + LSR+LRR++    LRQ + FFD   N+VG L SRL +    I + +G  + ++  S 
Sbjct  69   GERLSRRLRRKLFKKILRQPMSFFDT--NSVGELLSRLTNDTSKIRDGLGEKLGLLFQSL  126

Query  336  INIVASSVLAIAVSWKLGVIGVFVGLPPIMLGGYARVRLETKMDDEIGQRLSVSASIASE  395
              IV   ++     WKL ++ + V LP  +L      ++  K+  +  + ++ ++S+A E
Sbjct  127  ATIVGGIIVMFYYGWKLTLVLLAV-LPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEE  185

Query  396  TVMAIRTVASLALENTVLKNYTDELDRAIIQASGPMFHMMIWFSLTQSVEYFVLALGFWW  455
            ++  IRTV +   E   L+ Y   L+ A+           + F +TQ + Y   AL  W+
Sbjct  186  SLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWF  245

Query  456  GSKLINDGEITLYQFVV--SFMGVYF  479
            G+ L+  GE+++   V   S     F
Sbjct  246  GAYLVISGELSVGDLVAFLSLFAQLF  271


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 70.4 bits (173),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 31/65 (48%), Positives = 44/65 (68%), Gaps = 2/65 (3%)

Query  1    MKLVQEAAKLAFAHDFIENLPQGY--HTRIGERGGLLSGGQRQRIAIARSVISGPKILLL  58
            +K + +  K A A + +E L  G      +GER G LSGGQRQR+AIAR++++ PK+LLL
Sbjct  86   LKGLSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLL  145

Query  59   DEATS  63
            DE T+
Sbjct  146  DEPTA  150



Lambda      K        H        a         alpha
   0.321    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 623795192


Query= TCONS_00021161

Length=1284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  155     1e-42
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  139     9e-39


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 155 bits (394),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 78/280 (28%), Positives = 140/280 (50%), Gaps = 9/280 (3%)

Query  69   CIAFIAAIASGTALAMVNLVMGQFLTLLSDFSFSDMDSTPTNFMSAVRTSALYFIYIGVI  128
             +A + AI SG       LV+G+ L +L      D ++   N  S      L  + +G+ 
Sbjct  2    ILAILLAILSGAISPAFPLVLGRILDVLLPDG--DPETQALNVYS------LALLLLGLA  53

Query  129  RLLATYLYAALFTYVAYHLTRNIRRNYLRAAFSQEISYYDQGTSGSISQQATTNGNLIQS  188
            + + ++L + L  +    L+R +RR   +    Q +S++D  + G +  + T + + I+ 
Sbjct  54   QFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRD  113

Query  189  GIAEKLGIVIQAVSTFVATLVIAFVTQWKLTLILIFMVPTLLIVLGTAGGIDAMIETKIL  248
            G+ EKLG++ Q+++T V  +++ F   WKLTL+L+ ++P  ++V      I   +  K  
Sbjct  114  GLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQ  173

Query  249  QIHAQAGSYAESVLGGVRTVQAFSLRPRVIAKFDSYLQEAYSQGMRKNKLYGIVFGGQYF  308
            +  A+A S AE  L G+RTV+AF      + K+D  L+EA   G++K    G+ FG   F
Sbjct  174  KAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQF  233

Query  309  VVHAGMGLAFWQGIAMLDRGEI-ADLGTVFVVLFSIIMAA  347
            + +    LA W G  ++  GE+       F+ LF+ +   
Sbjct  234  IGYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273


 Score = 140 bits (354),  Expect = 3e-37, Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 125/266 (47%), Gaps = 7/266 (3%)

Query  722  IGGAAVNPGQALLLGNILSVFTSPNMVA--RGNFIALMFFVMSLGILVIYFIMGWSTNTI  779
            I   A++P   L+LG IL V            N  +L   ++ L   ++ F+  +  N  
Sbjct  9    ILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQSYLLNHT  68

Query  780  AQTLSRKLRREILDAFLRQDLRFFDRPENTVGALTSRLDSYPQAILELMGLTVAIILMSA  839
             + LSR+LRR++    LRQ + FFD   N+VG L SRL +    I + +G  + ++  S 
Sbjct  69   GERLSRRLRRKLFKKILRQPMSFFDT--NSVGELLSRLTNDTSKIRDGLGEKLGLLFQSL  126

Query  840  INIVASSVLAIAVSWKLGVIGVFVGLPPIMLGGYARVRLETKMDDEIGQRLSVSASIASE  899
              IV   ++     WKL ++ + V LP  +L      ++  K+  +  + ++ ++S+A E
Sbjct  127  ATIVGGIIVMFYYGWKLTLVLLAV-LPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEE  185

Query  900  TVMAIRTVASLALENTVLKNYTDELDRAIIQASGPMFHMMIWFSLTQSVEYFVLALGFWW  959
            ++  IRTV +   E   L+ Y   L+ A+           + F +TQ + Y   AL  W+
Sbjct  186  SLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWF  245

Query  960  GSKLINDGEITLYQFVV--SFMGVYF  983
            G+ L+  GE+++   V   S     F
Sbjct  246  GAYLVISGELSVGDLVAFLSLFAQLF  271


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 139 bits (353),  Expect = 9e-39, Method: Composition-based stats.
 Identities = 62/160 (39%), Positives = 87/160 (54%), Gaps = 11/160 (7%)

Query  1048  LKGVSLSIQRGDFVGFVGASGCGKSTMISLLERFYDPTDGTITIDSSAPLSFLNPLLYRR  1107
             LK VSL++  G+ +  VG +G GKST++ L+     PT+GTI +D    L+       R+
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQ-DLTDDERKSLRK  59

Query  1108  HVALVQQEPTLFPG-TIRENISQGMPGLSATEAASDDALEEACRAANAWDFVSSLPEGLD  1166
              +  V Q+P LFP  T+REN+  G+     ++   D   EEA       D         D
Sbjct  60    EIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL-------AD  112

Query  1167  TQCGTASGSQLLSGGQRQRIAIARALVRNPRVLLLDEATS  1206
                G   G+  LSGGQRQR+AIARAL+  P++LLLDE T+
Sbjct  113   RPVGERPGT--LSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 133 bits (337),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 63/162 (39%), Positives = 95/162 (59%), Gaps = 21/162 (13%)

Query  415  LEDFTLHIPAGKVTALVGPSGSGKSTIIGLLERWYSPCSGSISLDGKDISHLNLKWLRTN  474
            L++ +L +  G++ ALVGP+G+GKST++ L+    SP  G+I LDG+D++    K LR  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  475  ------EPVLFNA-SVFDNIANGLVGTPWETASHDDQMKLVQEAAKLAFAHDFIENLPQG  527
                  +P LF   +V +N+  GL             +K + +  K A A + +E L  G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------LLKGLSKREKDARAEEALEKLGLG  108

Query  528  Y--HTRIGERGGLLSGGQRQRIAIARSVISGPKILLLDEATS  567
                  +GER G LSGGQRQR+AIAR++++ PK+LLLDE T+
Sbjct  109  DLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.321    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1632647600


Query= TCONS_00026431

Length=958
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  150     5e-41
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  133     1e-36


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 150 bits (380),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 78/280 (28%), Positives = 140/280 (50%), Gaps = 9/280 (3%)

Query  69   CIAFIAAIASGTALAMVNLVMGQFLTLLSDFSFSDMDSTPTNFMSAVRTSALYFIYIGVI  128
             +A + AI SG       LV+G+ L +L      D ++   N  S      L  + +G+ 
Sbjct  2    ILAILLAILSGAISPAFPLVLGRILDVLLPDG--DPETQALNVYS------LALLLLGLA  53

Query  129  RLLATYLYAALFTYVAYHLTRNIRRNYLRAAFSQEISYYDQGTSGSISQQATTNGNLIQS  188
            + + ++L + L  +    L+R +RR   +    Q +S++D  + G +  + T + + I+ 
Sbjct  54   QFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRD  113

Query  189  GIAEKLGIVIQAVSTFVATLVIAFVTQWKLTLILIFMVPTLLIVLGTAGGIDAMIETKIL  248
            G+ EKLG++ Q+++T V  +++ F   WKLTL+L+ ++P  ++V      I   +  K  
Sbjct  114  GLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQ  173

Query  249  QIHAQAGSYAESVLGGVRTVQAFSLRPRVIAKFDSYLQEAYSQGMRKNKLYGIVFGGQYF  308
            +  A+A S AE  L G+RTV+AF      + K+D  L+EA   G++K    G+ FG   F
Sbjct  174  KAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQF  233

Query  309  VVHAGMGLAFWQGIAMLDRGEI-ADLGTVFVVLFSIIMAA  347
            + +    LA W G  ++  GE+       F+ LF+ +   
Sbjct  234  IGYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273


 Score = 120 bits (303),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 112/239 (47%), Gaps = 5/239 (2%)

Query  722  IGGAAVNPGQALLLGNILSVFTSPNMVA--RGNFIALMFFVMSLGILVIYFIMGWSTNTI  779
            I   A++P   L+LG IL V            N  +L   ++ L   ++ F+  +  N  
Sbjct  9    ILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQSYLLNHT  68

Query  780  AQTLSRKLRREILDAFLRQDLRFFDRPENTVGALTSRLDSYPQAILELMGLTVAIILMSA  839
             + LSR+LRR++    LRQ + FFD   N+VG L SRL +    I + +G  + ++  S 
Sbjct  69   GERLSRRLRRKLFKKILRQPMSFFDT--NSVGELLSRLTNDTSKIRDGLGEKLGLLFQSL  126

Query  840  INIVASSVLAIAVSWKLGVIGVFVGLPPIMLGGYARVRLETKMDDEIGQRLSVSASIASE  899
              IV   ++     WKL ++ + V LP  +L      ++  K+  +  + ++ ++S+A E
Sbjct  127  ATIVGGIIVMFYYGWKLTLVLLAV-LPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEE  185

Query  900  TVMAIRTVASLALENTVLKNYTDELDRAIIQASGPMFHMMIWFSLTQSVEYFVLALGFW  958
            ++  IRTV +   E   L+ Y   L+ A+           + F +TQ + Y   AL  W
Sbjct  186  SLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALW  244


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 133 bits (336),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 63/162 (39%), Positives = 95/162 (59%), Gaps = 21/162 (13%)

Query  415  LEDFTLHIPAGKVTALVGPSGSGKSTIIGLLERWYSPCSGSISLDGKDISHLNLKWLRTN  474
            L++ +L +  G++ ALVGP+G+GKST++ L+    SP  G+I LDG+D++    K LR  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  475  ------EPVLFNA-SVFDNIANGLVGTPWETASHDDQMKLVQEAAKLAFAHDFIENLPQG  527
                  +P LF   +V +N+  GL             +K + +  K A A + +E L  G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------LLKGLSKREKDARAEEALEKLGLG  108

Query  528  Y--HTRIGERGGLLSGGQRQRIAIARSVISGPKILLLDEATS  567
                  +GER G LSGGQRQR+AIAR++++ PK+LLLDE T+
Sbjct  109  DLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.322    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 1220485112


Query= TCONS_00021162

Length=1244
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  154     3e-42
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  143     3e-40


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 154 bits (391),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 78/280 (28%), Positives = 140/280 (50%), Gaps = 9/280 (3%)

Query  23   CIAFIAAIASGTALAMVNLVMGQFLTLLSDFSFSDMDSTPTNFMSAVRTSALYFIYIGVI  82
             +A + AI SG       LV+G+ L +L      D ++   N  S      L  + +G+ 
Sbjct  2    ILAILLAILSGAISPAFPLVLGRILDVLLPDG--DPETQALNVYS------LALLLLGLA  53

Query  83   RLLATYLYAALFTYVAYHLTRNIRRNYLRAAFSQEISYYDQGTSGSISQQATTNGNLIQS  142
            + + ++L + L  +    L+R +RR   +    Q +S++D  + G +  + T + + I+ 
Sbjct  54   QFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRD  113

Query  143  GIAEKLGIVIQAVSTFVATLVIAFVTQWKLTLILIFMVPTLLIVLGTAGGIDAMIETKIL  202
            G+ EKLG++ Q+++T V  +++ F   WKLTL+L+ ++P  ++V      I   +  K  
Sbjct  114  GLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQ  173

Query  203  QIHAQAGSYAESVLGGVRTVQAFSLRPRVIAKFDSYLQEAYSQGMRKNKLYGIVFGGQYF  262
            +  A+A S AE  L G+RTV+AF      + K+D  L+EA   G++K    G+ FG   F
Sbjct  174  KAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQF  233

Query  263  VVHAGMGLAFWQGIAMLDRGEI-ADLGTVFVVLFSIIMAA  301
            + +    LA W G  ++  GE+       F+ LF+ +   
Sbjct  234  IGYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273


 Score = 139 bits (352),  Expect = 5e-37, Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 125/266 (47%), Gaps = 7/266 (3%)

Query  682  IGGAAVNPGQALLLGNILSVFTSPNMVA--RGNFIALMFFVMSLGILVIYFIMGWSTNTI  739
            I   A++P   L+LG IL V            N  +L   ++ L   ++ F+  +  N  
Sbjct  9    ILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQSYLLNHT  68

Query  740  AQTLSRKLRREILDAFLRQDLRFFDRPENTVGALTSRLDSYPQAILELMGLTVAIILMSA  799
             + LSR+LRR++    LRQ + FFD   N+VG L SRL +    I + +G  + ++  S 
Sbjct  69   GERLSRRLRRKLFKKILRQPMSFFDT--NSVGELLSRLTNDTSKIRDGLGEKLGLLFQSL  126

Query  800  INIVASSVLAIAVSWKLGVIGVFVGLPPIMLGGYARVRLETKMDDEIGQRLSVSASIASE  859
              IV   ++     WKL ++ + V LP  +L      ++  K+  +  + ++ ++S+A E
Sbjct  127  ATIVGGIIVMFYYGWKLTLVLLAV-LPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEE  185

Query  860  TVMAIRTVASLALENTVLKNYTDELDRAIIQASGPMFHMMIWFSLTQSVEYFVLALGFWW  919
            ++  IRTV +   E   L+ Y   L+ A+           + F +TQ + Y   AL  W+
Sbjct  186  SLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWF  245

Query  920  GSKLINDGEITLYQFVV--SFMGVYF  943
            G+ L+  GE+++   V   S     F
Sbjct  246  GAYLVISGELSVGDLVAFLSLFAQLF  271


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 143 bits (364),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 65/162 (40%), Positives = 98/162 (60%), Gaps = 15/162 (9%)

Query  369  LEDFTLHIPAGKVTALVGPSGSGKSTIIGLLERWYSPCSGSISLDGKDISHLNLKWLRTN  428
            L++ +L +  G++ ALVGP+G+GKST++ L+    SP  G+I LDG+D++    K LR  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  429  VRLVQQEPVLFNA-SVFDNIANGLVGTPWETASHDDQMKLVQEAAKLAFAHDFIENLPQG  487
            +  V Q+P LF   +V +N+  GL             +K + +  K A A + +E L  G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------LLKGLSKREKDARAEEALEKLGLG  108

Query  488  Y--HTRIGERGGLLSGGQRQRIAIARSVISGPKILLLDEATS  527
                  +GER G LSGGQRQR+AIAR++++ PK+LLLDE T+
Sbjct  109  DLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 139 bits (353),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 62/160 (39%), Positives = 87/160 (54%), Gaps = 11/160 (7%)

Query  1008  LKGVSLSIQRGDFVGFVGASGCGKSTMISLLERFYDPTDGTITIDSSAPLSFLNPLLYRR  1067
             LK VSL++  G+ +  VG +G GKST++ L+     PT+GTI +D    L+       R+
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQ-DLTDDERKSLRK  59

Query  1068  HVALVQQEPTLFPG-TIRENISQGMPGLSATEAASDDALEEACRAANAWDFVSSLPEGLD  1126
              +  V Q+P LFP  T+REN+  G+     ++   D   EEA       D         D
Sbjct  60    EIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL-------AD  112

Query  1127  TQCGTASGSQLLSGGQRQRIAIARALVRNPRVLLLDEATS  1166
                G   G+  LSGGQRQR+AIARAL+  P++LLLDE T+
Sbjct  113   RPVGERPGT--LSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.321    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1601484986


Query= TCONS_00021163

Length=682
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  155     4e-43
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  133     4e-37


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 155 bits (393),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 78/280 (28%), Positives = 140/280 (50%), Gaps = 9/280 (3%)

Query  23   CIAFIAAIASGTALAMVNLVMGQFLTLLSDFSFSDMDSTPTNFMSAVRTSALYFIYIGVI  82
             +A + AI SG       LV+G+ L +L      D ++   N  S      L  + +G+ 
Sbjct  2    ILAILLAILSGAISPAFPLVLGRILDVLLPDG--DPETQALNVYS------LALLLLGLA  53

Query  83   RLLATYLYAALFTYVAYHLTRNIRRNYLRAAFSQEISYYDQGTSGSISQQATTNGNLIQS  142
            + + ++L + L  +    L+R +RR   +    Q +S++D  + G +  + T + + I+ 
Sbjct  54   QFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRD  113

Query  143  GIAEKLGIVIQAVSTFVATLVIAFVTQWKLTLILIFMVPTLLIVLGTAGGIDAMIETKIL  202
            G+ EKLG++ Q+++T V  +++ F   WKLTL+L+ ++P  ++V      I   +  K  
Sbjct  114  GLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQ  173

Query  203  QIHAQAGSYAESVLGGVRTVQAFSLRPRVIAKFDSYLQEAYSQGMRKNKLYGIVFGGQYF  262
            +  A+A S AE  L G+RTV+AF      + K+D  L+EA   G++K    G+ FG   F
Sbjct  174  KAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQF  233

Query  263  VVHAGMGLAFWQGIAMLDRGEI-ADLGTVFVVLFSIIMAA  301
            + +    LA W G  ++  GE+       F+ LF+ +   
Sbjct  234  IGYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 133 bits (338),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 63/162 (39%), Positives = 95/162 (59%), Gaps = 21/162 (13%)

Query  369  LEDFTLHIPAGKVTALVGPSGSGKSTIIGLLERWYSPCSGSISLDGKDISHLNLKWLRTN  428
            L++ +L +  G++ ALVGP+G+GKST++ L+    SP  G+I LDG+D++    K LR  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  429  ------EPVLFNA-SVFDNIANGLVGTPWETASHDDQMKLVQEAAKLAFAHDFIENLPQG  481
                  +P LF   +V +N+  GL             +K + +  K A A + +E L  G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------LLKGLSKREKDARAEEALEKLGLG  108

Query  482  Y--HTRIGERGGLLSGGQRQRIAIARSVISGPKILLLDEATS  521
                  +GER G LSGGQRQR+AIAR++++ PK+LLLDE T+
Sbjct  109  DLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.321    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 868651310


Query= TCONS_00026432

Length=1290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  154     3e-42
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  140     8e-39


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 154 bits (391),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 78/280 (28%), Positives = 140/280 (50%), Gaps = 9/280 (3%)

Query  69   CIAFIAAIASGTALAMVNLVMGQFLTLLSDFSFSDMDSTPTNFMSAVRTSALYFIYIGVI  128
             +A + AI SG       LV+G+ L +L      D ++   N  S      L  + +G+ 
Sbjct  2    ILAILLAILSGAISPAFPLVLGRILDVLLPDG--DPETQALNVYS------LALLLLGLA  53

Query  129  RLLATYLYAALFTYVAYHLTRNIRRNYLRAAFSQEISYYDQGTSGSISQQATTNGNLIQS  188
            + + ++L + L  +    L+R +RR   +    Q +S++D  + G +  + T + + I+ 
Sbjct  54   QFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRD  113

Query  189  GIAEKLGIVIQAVSTFVATLVIAFVTQWKLTLILIFMVPTLLIVLGTAGGIDAMIETKIL  248
            G+ EKLG++ Q+++T V  +++ F   WKLTL+L+ ++P  ++V      I   +  K  
Sbjct  114  GLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQ  173

Query  249  QIHAQAGSYAESVLGGVRTVQAFSLRPRVIAKFDSYLQEAYSQGMRKNKLYGIVFGGQYF  308
            +  A+A S AE  L G+RTV+AF      + K+D  L+EA   G++K    G+ FG   F
Sbjct  174  KAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQF  233

Query  309  VVHAGMGLAFWQGIAMLDRGEI-ADLGTVFVVLFSIIMAA  347
            + +    LA W G  ++  GE+       F+ LF+ +   
Sbjct  234  IGYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273


 Score = 139 bits (352),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 125/266 (47%), Gaps = 7/266 (3%)

Query  722  IGGAAVNPGQALLLGNILSVFTSPNMVA--RGNFIALMFFVMSLGILVIYFIMGWSTNTI  779
            I   A++P   L+LG IL V            N  +L   ++ L   ++ F+  +  N  
Sbjct  9    ILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQSYLLNHT  68

Query  780  AQTLSRKLRREILDAFLRQDLRFFDRPENTVGALTSRLDSYPQAILELMGLTVAIILMSA  839
             + LSR+LRR++    LRQ + FFD   N+VG L SRL +    I + +G  + ++  S 
Sbjct  69   GERLSRRLRRKLFKKILRQPMSFFDT--NSVGELLSRLTNDTSKIRDGLGEKLGLLFQSL  126

Query  840  INIVASSVLAIAVSWKLGVIGVFVGLPPIMLGGYARVRLETKMDDEIGQRLSVSASIASE  899
              IV   ++     WKL ++ + V LP  +L      ++  K+  +  + ++ ++S+A E
Sbjct  127  ATIVGGIIVMFYYGWKLTLVLLAV-LPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEE  185

Query  900  TVMAIRTVASLALENTVLKNYTDELDRAIIQASGPMFHMMIWFSLTQSVEYFVLALGFWW  959
            ++  IRTV +   E   L+ Y   L+ A+           + F +TQ + Y   AL  W+
Sbjct  186  SLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWF  245

Query  960  GSKLINDGEITLYQFVV--SFMGVYF  983
            G+ L+  GE+++   V   S     F
Sbjct  246  GAYLVISGELSVGDLVAFLSLFAQLF  271


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 140 bits (354),  Expect = 8e-39, Method: Composition-based stats.
 Identities = 62/160 (39%), Positives = 87/160 (54%), Gaps = 11/160 (7%)

Query  1054  LKGVSLSIQRGDFVGFVGASGCGKSTMISLLERFYDPTDGTITIDSSAPLSFLNPLLYRR  1113
             LK VSL++  G+ +  VG +G GKST++ L+     PT+GTI +D    L+       R+
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQ-DLTDDERKSLRK  59

Query  1114  HVALVQQEPTLFPG-TIRENISQGMPGLSATEAASDDALEEACRAANAWDFVSSLPEGLD  1172
              +  V Q+P LFP  T+REN+  G+     ++   D   EEA       D         D
Sbjct  60    EIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL-------AD  112

Query  1173  TQCGTASGSQLLSGGQRQRIAIARALVRNPRVLLLDEATS  1212
                G   G+  LSGGQRQR+AIARAL+  P++LLLDE T+
Sbjct  113   RPVGERPGT--LSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 133 bits (337),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 63/162 (39%), Positives = 95/162 (59%), Gaps = 21/162 (13%)

Query  415  LEDFTLHIPAGKVTALVGPSGSGKSTIIGLLERWYSPCSGSISLDGKDISHLNLKWLRTN  474
            L++ +L +  G++ ALVGP+G+GKST++ L+    SP  G+I LDG+D++    K LR  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  475  ------EPVLFNA-SVFDNIANGLVGTPWETASHDDQMKLVQEAAKLAFAHDFIENLPQG  527
                  +P LF   +V +N+  GL             +K + +  K A A + +E L  G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------LLKGLSKREKDARAEEALEKLGLG  108

Query  528  Y--HTRIGERGGLLSGGQRQRIAIARSVISGPKILLLDEATS  567
                  +GER G LSGGQRQR+AIAR++++ PK+LLLDE T+
Sbjct  109  DLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.321    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1640907200


Query= TCONS_00026433

Length=1238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  154     3e-42
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  139     1e-38


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 154 bits (391),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 78/280 (28%), Positives = 140/280 (50%), Gaps = 9/280 (3%)

Query  23   CIAFIAAIASGTALAMVNLVMGQFLTLLSDFSFSDMDSTPTNFMSAVRTSALYFIYIGVI  82
             +A + AI SG       LV+G+ L +L      D ++   N  S      L  + +G+ 
Sbjct  2    ILAILLAILSGAISPAFPLVLGRILDVLLPDG--DPETQALNVYS------LALLLLGLA  53

Query  83   RLLATYLYAALFTYVAYHLTRNIRRNYLRAAFSQEISYYDQGTSGSISQQATTNGNLIQS  142
            + + ++L + L  +    L+R +RR   +    Q +S++D  + G +  + T + + I+ 
Sbjct  54   QFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRD  113

Query  143  GIAEKLGIVIQAVSTFVATLVIAFVTQWKLTLILIFMVPTLLIVLGTAGGIDAMIETKIL  202
            G+ EKLG++ Q+++T V  +++ F   WKLTL+L+ ++P  ++V      I   +  K  
Sbjct  114  GLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQ  173

Query  203  QIHAQAGSYAESVLGGVRTVQAFSLRPRVIAKFDSYLQEAYSQGMRKNKLYGIVFGGQYF  262
            +  A+A S AE  L G+RTV+AF      + K+D  L+EA   G++K    G+ FG   F
Sbjct  174  KAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQF  233

Query  263  VVHAGMGLAFWQGIAMLDRGEI-ADLGTVFVVLFSIIMAA  301
            + +    LA W G  ++  GE+       F+ LF+ +   
Sbjct  234  IGYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273


 Score = 139 bits (352),  Expect = 5e-37, Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 125/266 (47%), Gaps = 7/266 (3%)

Query  676  IGGAAVNPGQALLLGNILSVFTSPNMVA--RGNFIALMFFVMSLGILVIYFIMGWSTNTI  733
            I   A++P   L+LG IL V            N  +L   ++ L   ++ F+  +  N  
Sbjct  9    ILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQSYLLNHT  68

Query  734  AQTLSRKLRREILDAFLRQDLRFFDRPENTVGALTSRLDSYPQAILELMGLTVAIILMSA  793
             + LSR+LRR++    LRQ + FFD   N+VG L SRL +    I + +G  + ++  S 
Sbjct  69   GERLSRRLRRKLFKKILRQPMSFFDT--NSVGELLSRLTNDTSKIRDGLGEKLGLLFQSL  126

Query  794  INIVASSVLAIAVSWKLGVIGVFVGLPPIMLGGYARVRLETKMDDEIGQRLSVSASIASE  853
              IV   ++     WKL ++ + V LP  +L      ++  K+  +  + ++ ++S+A E
Sbjct  127  ATIVGGIIVMFYYGWKLTLVLLAV-LPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEE  185

Query  854  TVMAIRTVASLALENTVLKNYTDELDRAIIQASGPMFHMMIWFSLTQSVEYFVLALGFWW  913
            ++  IRTV +   E   L+ Y   L+ A+           + F +TQ + Y   AL  W+
Sbjct  186  SLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWF  245

Query  914  GSKLINDGEITLYQFVV--SFMGVYF  937
            G+ L+  GE+++   V   S     F
Sbjct  246  GAYLVISGELSVGDLVAFLSLFAQLF  271


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 139 bits (353),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 62/160 (39%), Positives = 87/160 (54%), Gaps = 11/160 (7%)

Query  1002  LKGVSLSIQRGDFVGFVGASGCGKSTMISLLERFYDPTDGTITIDSSAPLSFLNPLLYRR  1061
             LK VSL++  G+ +  VG +G GKST++ L+     PT+GTI +D    L+       R+
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQ-DLTDDERKSLRK  59

Query  1062  HVALVQQEPTLFPG-TIRENISQGMPGLSATEAASDDALEEACRAANAWDFVSSLPEGLD  1120
              +  V Q+P LFP  T+REN+  G+     ++   D   EEA       D         D
Sbjct  60    EIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL-------AD  112

Query  1121  TQCGTASGSQLLSGGQRQRIAIARALVRNPRVLLLDEATS  1160
                G   G+  LSGGQRQR+AIARAL+  P++LLLDE T+
Sbjct  113   RPVGERPGT--LSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 133 bits (337),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 63/162 (39%), Positives = 95/162 (59%), Gaps = 21/162 (13%)

Query  369  LEDFTLHIPAGKVTALVGPSGSGKSTIIGLLERWYSPCSGSISLDGKDISHLNLKWLRTN  428
            L++ +L +  G++ ALVGP+G+GKST++ L+    SP  G+I LDG+D++    K LR  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  429  ------EPVLFNA-SVFDNIANGLVGTPWETASHDDQMKLVQEAAKLAFAHDFIENLPQG  481
                  +P LF   +V +N+  GL             +K + +  K A A + +E L  G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------LLKGLSKREKDARAEEALEKLGLG  108

Query  482  Y--HTRIGERGGLLSGGQRQRIAIARSVISGPKILLLDEATS  521
                  +GER G LSGGQRQR+AIAR++++ PK+LLLDE T+
Sbjct  109  DLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.321    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1593107558


Query= TCONS_00026434

Length=1290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  155     1e-42
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  143     3e-40


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 155 bits (393),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 78/280 (28%), Positives = 140/280 (50%), Gaps = 9/280 (3%)

Query  69   CIAFIAAIASGTALAMVNLVMGQFLTLLSDFSFSDMDSTPTNFMSAVRTSALYFIYIGVI  128
             +A + AI SG       LV+G+ L +L      D ++   N  S      L  + +G+ 
Sbjct  2    ILAILLAILSGAISPAFPLVLGRILDVLLPDG--DPETQALNVYS------LALLLLGLA  53

Query  129  RLLATYLYAALFTYVAYHLTRNIRRNYLRAAFSQEISYYDQGTSGSISQQATTNGNLIQS  188
            + + ++L + L  +    L+R +RR   +    Q +S++D  + G +  + T + + I+ 
Sbjct  54   QFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRD  113

Query  189  GIAEKLGIVIQAVSTFVATLVIAFVTQWKLTLILIFMVPTLLIVLGTAGGIDAMIETKIL  248
            G+ EKLG++ Q+++T V  +++ F   WKLTL+L+ ++P  ++V      I   +  K  
Sbjct  114  GLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQ  173

Query  249  QIHAQAGSYAESVLGGVRTVQAFSLRPRVIAKFDSYLQEAYSQGMRKNKLYGIVFGGQYF  308
            +  A+A S AE  L G+RTV+AF      + K+D  L+EA   G++K    G+ FG   F
Sbjct  174  KAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQF  233

Query  309  VVHAGMGLAFWQGIAMLDRGEI-ADLGTVFVVLFSIIMAA  347
            + +    LA W G  ++  GE+       F+ LF+ +   
Sbjct  234  IGYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273


 Score = 140 bits (354),  Expect = 3e-37, Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 125/266 (47%), Gaps = 7/266 (3%)

Query  728  IGGAAVNPGQALLLGNILSVFTSPNMVA--RGNFIALMFFVMSLGILVIYFIMGWSTNTI  785
            I   A++P   L+LG IL V            N  +L   ++ L   ++ F+  +  N  
Sbjct  9    ILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQSYLLNHT  68

Query  786  AQTLSRKLRREILDAFLRQDLRFFDRPENTVGALTSRLDSYPQAILELMGLTVAIILMSA  845
             + LSR+LRR++    LRQ + FFD   N+VG L SRL +    I + +G  + ++  S 
Sbjct  69   GERLSRRLRRKLFKKILRQPMSFFDT--NSVGELLSRLTNDTSKIRDGLGEKLGLLFQSL  126

Query  846  INIVASSVLAIAVSWKLGVIGVFVGLPPIMLGGYARVRLETKMDDEIGQRLSVSASIASE  905
              IV   ++     WKL ++ + V LP  +L      ++  K+  +  + ++ ++S+A E
Sbjct  127  ATIVGGIIVMFYYGWKLTLVLLAV-LPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEE  185

Query  906  TVMAIRTVASLALENTVLKNYTDELDRAIIQASGPMFHMMIWFSLTQSVEYFVLALGFWW  965
            ++  IRTV +   E   L+ Y   L+ A+           + F +TQ + Y   AL  W+
Sbjct  186  SLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWF  245

Query  966  GSKLINDGEITLYQFVV--SFMGVYF  989
            G+ L+  GE+++   V   S     F
Sbjct  246  GAYLVISGELSVGDLVAFLSLFAQLF  271


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 143 bits (364),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 65/162 (40%), Positives = 98/162 (60%), Gaps = 15/162 (9%)

Query  415  LEDFTLHIPAGKVTALVGPSGSGKSTIIGLLERWYSPCSGSISLDGKDISHLNLKWLRTN  474
            L++ +L +  G++ ALVGP+G+GKST++ L+    SP  G+I LDG+D++    K LR  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  475  VRLVQQEPVLFNA-SVFDNIANGLVGTPWETASHDDQMKLVQEAAKLAFAHDFIENLPQG  533
            +  V Q+P LF   +V +N+  GL             +K + +  K A A + +E L  G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------LLKGLSKREKDARAEEALEKLGLG  108

Query  534  Y--HTRIGERGGLLSGGQRQRIAIARSVISGPKILLLDEATS  573
                  +GER G LSGGQRQR+AIAR++++ PK+LLLDE T+
Sbjct  109  DLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 139 bits (353),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 62/160 (39%), Positives = 87/160 (54%), Gaps = 11/160 (7%)

Query  1054  LKGVSLSIQRGDFVGFVGASGCGKSTMISLLERFYDPTDGTITIDSSAPLSFLNPLLYRR  1113
             LK VSL++  G+ +  VG +G GKST++ L+     PT+GTI +D    L+       R+
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQ-DLTDDERKSLRK  59

Query  1114  HVALVQQEPTLFPG-TIRENISQGMPGLSATEAASDDALEEACRAANAWDFVSSLPEGLD  1172
              +  V Q+P LFP  T+REN+  G+     ++   D   EEA       D         D
Sbjct  60    EIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL-------AD  112

Query  1173  TQCGTASGSQLLSGGQRQRIAIARALVRNPRVLLLDEATS  1212
                G   G+  LSGGQRQR+AIARAL+  P++LLLDE T+
Sbjct  113   RPVGERPGT--LSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.321    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1640907200


Query= TCONS_00021164

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  139     4e-42


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 139 bits (353),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 62/160 (39%), Positives = 87/160 (54%), Gaps = 11/160 (7%)

Query  34   LKGVSLSIQRGDFVGFVGASGCGKSTMISLLERFYDPTDGTITIDSSAPLSFLNPLLYRR  93
            LK VSL++  G+ +  VG +G GKST++ L+     PT+GTI +D    L+       R+
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQ-DLTDDERKSLRK  59

Query  94   HVALVQQEPTLFPG-TIRENISQGMPGLSATEAASDDALEEACRAANAWDFVSSLPEGLD  152
             +  V Q+P LFP  T+REN+  G+     ++   D   EEA       D         D
Sbjct  60   EIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL-------AD  112

Query  153  TQCGTASGSQLLSGGQRQRIAIARALVRNPRVLLLDEATS  192
               G   G+  LSGGQRQR+AIARAL+  P++LLLDE T+
Sbjct  113  RPVGERPGT--LSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.317    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00021165

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            85.2    2e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 85.2 bits (211),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 50/334 (15%), Positives = 98/334 (29%), Gaps = 49/334 (15%)

Query  123  WATTSWNMGAAFWPLIFVPLTESSGRMPGYFVSYIILVATLFGSAFAHNFATIVVTRFFG  182
               T +++G A    +   L++  GR     +  ++    L    FA +   ++V R   
Sbjct  36   LLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQ  95

Query  183  GGASSVSINIVGGSISDVWQGGKARSLPMSLFGFTSVIGIALGPFIGSAIVQIKKDDPWR  242
            G  +          I+D W   + R   + L      +G ALGP +G  +  +     WR
Sbjct  96   GLGAGALFPAALALIAD-WFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLF---GWR  151

Query  243  WIFYVQIIYNAALIPIFWLILRETRSDVILKRRARKIRKETGRHVYTASELNAPSTMRLL  302
              F +  I +     +  L      S         ++                 S +   
Sbjct  152  AAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARL-----------------SLIVAW  194

Query  303  QISFSRPARMLVSEPVVQFFTLWISFAWGILYLFFSSVVQTYSTNYGWGVLATGLVQLAI  362
            +     P            + L     +G  +    + +  Y    G   L  GL+   +
Sbjct  195  KALLRDPV----------LWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLL---L  241

Query  363  SVGAVIATAINPFQDWLYLRSAKRNPERPGRPIPEARLYTSIPGSLLFTAGLFWYGWASQ  422
             +G ++          L  R  +R            RL  ++   +L   GL        
Sbjct  242  GLGGLLGAIGRLLLGRLSDRLGRRR-----------RLLLALLLLILAALGLLLLSLTLS  290

Query  423  PDVHWIVPTIGITAAGIGIYAIYMGVVNYLTDAY  456
                 +   +     G G   ++  +   ++D  
Sbjct  291  SLWLLLALLL----LGFGFGLVFPALNALVSDLA  320



Lambda      K        H        a         alpha
   0.321    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684448024


Query= TCONS_00021166

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            76.3    9e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 76.3 bits (188),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 50/334 (15%), Positives = 98/334 (29%), Gaps = 49/334 (15%)

Query  17   WATTSWNMGAAFWPLIFVPLTESSGRMPGYFVSYIILVATLFGSAFAHNFATIVVTRFFG  76
               T +++G A    +   L++  GR     +  ++    L    FA +   ++V R   
Sbjct  36   LLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQ  95

Query  77   GGASSVSINIVGGSISDVWQGGKARSLPMSLFGFTSVIGIALGPFIGSAIVQIKKDDPWR  136
            G  +          I+D W   + R   + L      +G ALGP +G  +  +     WR
Sbjct  96   GLGAGALFPAALALIAD-WFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLF---GWR  151

Query  137  WIFYVQIIYNAALIPIFWLILRETRSDVILKRRARKIRKETGRHVYTASELNAPSTMRLL  196
              F +  I +     +  L      S         ++                 S +   
Sbjct  152  AAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARL-----------------SLIVAW  194

Query  197  QISFSRPARMLVSEPVVQFFTLWISFAWGILYLFFSSVVQTYSTNYGWGVLATGLVQLAI  256
            +     P            + L     +G  +    + +  Y    G   L  GL+   +
Sbjct  195  KALLRDPV----------LWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLL---L  241

Query  257  SVGAVIATAINPFQDWLYLRSAKRNPERPGRPIPEARLYTSIPGSLLFTAGLFWYGWASQ  316
             +G ++          L  R  +R            RL  ++   +L   GL        
Sbjct  242  GLGGLLGAIGRLLLGRLSDRLGRRR-----------RLLLALLLLILAALGLLLLSLTLS  290

Query  317  PDVHWIVPTIGITAAGIGIYAIYMGVVNYLTDAY  350
                 +   +     G G   ++  +   ++D  
Sbjct  291  SLWLLLALLL----LGFGFGLVFPALNALVSDLA  320



Lambda      K        H        a         alpha
   0.323    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00026435

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            76.3    9e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 76.3 bits (188),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 50/334 (15%), Positives = 98/334 (29%), Gaps = 49/334 (15%)

Query  17   WATTSWNMGAAFWPLIFVPLTESSGRMPGYFVSYIILVATLFGSAFAHNFATIVVTRFFG  76
               T +++G A    +   L++  GR     +  ++    L    FA +   ++V R   
Sbjct  36   LLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQ  95

Query  77   GGASSVSINIVGGSISDVWQGGKARSLPMSLFGFTSVIGIALGPFIGSAIVQIKKDDPWR  136
            G  +          I+D W   + R   + L      +G ALGP +G  +  +     WR
Sbjct  96   GLGAGALFPAALALIAD-WFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLF---GWR  151

Query  137  WIFYVQIIYNAALIPIFWLILRETRSDVILKRRARKIRKETGRHVYTASELNAPSTMRLL  196
              F +  I +     +  L      S         ++                 S +   
Sbjct  152  AAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARL-----------------SLIVAW  194

Query  197  QISFSRPARMLVSEPVVQFFTLWISFAWGILYLFFSSVVQTYSTNYGWGVLATGLVQLAI  256
            +     P            + L     +G  +    + +  Y    G   L  GL+   +
Sbjct  195  KALLRDPV----------LWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLL---L  241

Query  257  SVGAVIATAINPFQDWLYLRSAKRNPERPGRPIPEARLYTSIPGSLLFTAGLFWYGWASQ  316
             +G ++          L  R  +R            RL  ++   +L   GL        
Sbjct  242  GLGGLLGAIGRLLLGRLSDRLGRRR-----------RLLLALLLLILAALGLLLLSLTLS  290

Query  317  PDVHWIVPTIGITAAGIGIYAIYMGVVNYLTDAY  350
                 +   +     G G   ++  +   ++D  
Sbjct  291  SLWLLLALLL----LGFGFGLVFPALNALVSDLA  320



Lambda      K        H        a         alpha
   0.323    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00026436

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            76.3    9e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 76.3 bits (188),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 50/334 (15%), Positives = 98/334 (29%), Gaps = 49/334 (15%)

Query  17   WATTSWNMGAAFWPLIFVPLTESSGRMPGYFVSYIILVATLFGSAFAHNFATIVVTRFFG  76
               T +++G A    +   L++  GR     +  ++    L    FA +   ++V R   
Sbjct  36   LLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQ  95

Query  77   GGASSVSINIVGGSISDVWQGGKARSLPMSLFGFTSVIGIALGPFIGSAIVQIKKDDPWR  136
            G  +          I+D W   + R   + L      +G ALGP +G  +  +     WR
Sbjct  96   GLGAGALFPAALALIAD-WFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLF---GWR  151

Query  137  WIFYVQIIYNAALIPIFWLILRETRSDVILKRRARKIRKETGRHVYTASELNAPSTMRLL  196
              F +  I +     +  L      S         ++                 S +   
Sbjct  152  AAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARL-----------------SLIVAW  194

Query  197  QISFSRPARMLVSEPVVQFFTLWISFAWGILYLFFSSVVQTYSTNYGWGVLATGLVQLAI  256
            +     P            + L     +G  +    + +  Y    G   L  GL+   +
Sbjct  195  KALLRDPV----------LWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLL---L  241

Query  257  SVGAVIATAINPFQDWLYLRSAKRNPERPGRPIPEARLYTSIPGSLLFTAGLFWYGWASQ  316
             +G ++          L  R  +R            RL  ++   +L   GL        
Sbjct  242  GLGGLLGAIGRLLLGRLSDRLGRRR-----------RLLLALLLLILAALGLLLLSLTLS  290

Query  317  PDVHWIVPTIGITAAGIGIYAIYMGVVNYLTDAY  350
                 +   +     G G   ++  +   ++D  
Sbjct  291  SLWLLLALLL----LGFGFGLVFPALNALVSDLA  320



Lambda      K        H        a         alpha
   0.323    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00021167

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            80.5    4e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 80.5 bits (199),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 50/334 (15%), Positives = 98/334 (29%), Gaps = 49/334 (15%)

Query  91   WATTSWNMGAAFWPLIFVPLTESSGRMPGYFVSYIILVATLFGSAFAHNFATIVVTRFFG  150
               T +++G A    +   L++  GR     +  ++    L    FA +   ++V R   
Sbjct  36   LLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQ  95

Query  151  GGASSVSINIVGGSISDVWQGGKARSLPMSLFGFTSVIGIALGPFIGSAIVQIKKDDPWR  210
            G  +          I+D W   + R   + L      +G ALGP +G  +  +     WR
Sbjct  96   GLGAGALFPAALALIAD-WFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLF---GWR  151

Query  211  WIFYVQIIYNAALIPIFWLILRETRSDVILKRRARKIRKETGRHVYTASELNAPSTMRLL  270
              F +  I +     +  L      S         ++                 S +   
Sbjct  152  AAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARL-----------------SLIVAW  194

Query  271  QISFSRPARMLVSEPVVQFFTLWISFAWGILYLFFSSVVQTYSTNYGWGVLATGLVQLAI  330
            +     P            + L     +G  +    + +  Y    G   L  GL+   +
Sbjct  195  KALLRDPV----------LWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLL---L  241

Query  331  SVGAVIATAINPFQDWLYLRSAKRNPERPGRPIPEARLYTSIPGSLLFTAGLFWYGWASQ  390
             +G ++          L  R  +R            RL  ++   +L   GL        
Sbjct  242  GLGGLLGAIGRLLLGRLSDRLGRRR-----------RLLLALLLLILAALGLLLLSLTLS  290

Query  391  PDVHWIVPTIGITAAGIGIYAIYMGVVNYLTDAY  424
                 +   +     G G   ++  +   ++D  
Sbjct  291  SLWLLLALLL----LGFGFGLVFPALNALVSDLA  320



Lambda      K        H        a         alpha
   0.323    0.138    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00021168

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            76.3    9e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 76.3 bits (188),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 50/334 (15%), Positives = 98/334 (29%), Gaps = 49/334 (15%)

Query  17   WATTSWNMGAAFWPLIFVPLTESSGRMPGYFVSYIILVATLFGSAFAHNFATIVVTRFFG  76
               T +++G A    +   L++  GR     +  ++    L    FA +   ++V R   
Sbjct  36   LLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQ  95

Query  77   GGASSVSINIVGGSISDVWQGGKARSLPMSLFGFTSVIGIALGPFIGSAIVQIKKDDPWR  136
            G  +          I+D W   + R   + L      +G ALGP +G  +  +     WR
Sbjct  96   GLGAGALFPAALALIAD-WFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLF---GWR  151

Query  137  WIFYVQIIYNAALIPIFWLILRETRSDVILKRRARKIRKETGRHVYTASELNAPSTMRLL  196
              F +  I +     +  L      S         ++                 S +   
Sbjct  152  AAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARL-----------------SLIVAW  194

Query  197  QISFSRPARMLVSEPVVQFFTLWISFAWGILYLFFSSVVQTYSTNYGWGVLATGLVQLAI  256
            +     P            + L     +G  +    + +  Y    G   L  GL+   +
Sbjct  195  KALLRDPV----------LWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLL---L  241

Query  257  SVGAVIATAINPFQDWLYLRSAKRNPERPGRPIPEARLYTSIPGSLLFTAGLFWYGWASQ  316
             +G ++          L  R  +R            RL  ++   +L   GL        
Sbjct  242  GLGGLLGAIGRLLLGRLSDRLGRRR-----------RLLLALLLLILAALGLLLLSLTLS  290

Query  317  PDVHWIVPTIGITAAGIGIYAIYMGVVNYLTDAY  350
                 +   +     G G   ++  +   ++D  
Sbjct  291  SLWLLLALLL----LGFGFGLVFPALNALVSDLA  320



Lambda      K        H        a         alpha
   0.323    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00021171

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00021170

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0691    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00021172

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00021169

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00021173

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00026437

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00021174

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00021175

Length=628
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               90.9    9e-23
CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies)            60.8    2e-12


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 90.9 bits (226),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 3/89 (3%)

Query  220  LYWAVEQGNLPFVVQLLKVNADPDVKDNQGRTPLLWAAEKGHEEVVRLLIGSRRVNVNAA  279
            L+ A + GNL  V  LL+  AD +++D  GRT L  AA+ GH E+V+LL+    VN+   
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKDN  60

Query  280  DAVGRTPLWWAARNGHLPVVRLLVRNGAD  308
               GRT L +AAR+GHL +V+LL+  GAD
Sbjct  61   ---GRTALHYAARSGHLEIVKLLLEKGAD  86


 Score = 89.0 bits (221),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 2/93 (2%)

Query  430  LHLAVIHEHEEIVEMLLANGGDPEAADHTGDTPLHLAVFAGHRRLVGLLLEKDCDINVTN  489
            LHLA  + + E+V++LL NG D    D  G T LHLA   GH  +V LLLE   D+N+ +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  490  HCGETPLHKAVERGHRKMVEFLLRNGAELEMQD  522
            + G T LH A   GH ++V+ LL  GA++ ++D
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 84.8 bits (210),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 37/93 (40%), Positives = 58/93 (62%), Gaps = 3/93 (3%)

Query  463  LHLAVFAGHRRLVGLLLEKDCDINVTNHCGETPLHKAVERGHRKMVEFLLRNGAELEMQD  522
            LHLA   G+  LV LLLE   D N+ +  G T LH A + GH ++V+ LL + A++ ++ 
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLK-  58

Query  523  DYKRTPLHRAVKAKNH-VMRLLVNKGANIHATD  554
            D  RT LH A ++ +  +++LL+ KGA+I+  D
Sbjct  59   DNGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 80.5 bits (199),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 2/93 (2%)

Query  397  LHILAKDGDMDLTALFLQRGAQVNAAAKDGKTPLHLAVIHEHEEIVEMLLANGGDPEAAD  456
            LH+ AK+G+++L  L L+ GA  N   K+G+T LHLA  + H EIV++LL +  D    D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  457  HTGDTPLHLAVFAGHRRLVGLLLEKDCDINVTN  489
            + G T LH A  +GH  +V LLLEK  DINV +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 79.4 bits (196),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 37/93 (40%), Positives = 56/93 (60%), Gaps = 3/93 (3%)

Query  496  LHKAVERGHRKMVEFLLRNGAELEMQDDYKRTPLHRAVKAKN-HVMRLLVNKGANIHATD  554
            LH A + G+ ++V+ LL NGA+  +QD   RT LH A K  +  +++LL+   A+++  D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  555  MYGQTALHIAAEAGLRDDVDFLLGHGAEAEAKD  587
              G+TALH AA +G  + V  LL  GA+   KD
Sbjct  60   -NGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 71.3 bits (175),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 37/95 (39%), Positives = 51/95 (54%), Gaps = 4/95 (4%)

Query  152  LYWAVKNGNEAVAGALLGRAEVDPNAAGADGQTPLYLAVRNGHEGIMNRLLARGETNPDI  211
            L+ A KNGN  +   LL     D N    +G+T L+LA +NGH  I+  LL   + N   
Sbjct  1    LHLAAKNGNLELVKLLL-ENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLK-  58

Query  212  PDANGQTPLYWAVEQGNLPFVVQLLKVNADPDVKD  246
               NG+T L++A   G+L  V  LL+  AD +VKD
Sbjct  59   --DNGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 69.8 bits (171),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 57/97 (59%), Gaps = 6/97 (6%)

Query  15   LFLAASKGYDTIVKLLLSTPGVRLDFKDEDGRNAVSLAAEGGHESVLQILLETGQVDVNA  74
            L LAA  G   +VKLLL   G   + +D++GR A+ LAA+ GH  ++++LLE   V++  
Sbjct  1    LHLAAKNGNLELVKLLLE-NGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKD  59

Query  75   VDTKTGQSPLCWAVKNGHAGVVSKLLAVENIDPNIPD  111
                 G++ L +A ++GH  +V KLL  +  D N+ D
Sbjct  60   ----NGRTALHYAARSGHLEIV-KLLLEKGADINVKD  91


 Score = 68.6 bits (168),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query  84   LCWAVKNGHAGVVSKLLAVENIDPNIPDANGETPLYAAVKSENGGIIDQLLARADLNANT  143
            L  A KNG+  +V KLL     D N+ D NG T L+ A K+ +  I+  LL  AD+N   
Sbjct  1    LHLAAKNGNLELV-KLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKD  59

Query  144  PDAAGQTPLYWAVKNGNEAVAGALLGRAEVDPNA  177
                G+T L++A ++G+  +   LL +   D N 
Sbjct  60   ---NGRTALHYAARSGHLEIVKLLLEK-GADINV  89


 Score = 65.1 bits (159),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 49/82 (60%), Gaps = 2/82 (2%)

Query  375  MLNVLLEKGANVNARDTKGRTTLHILAKDGDMDLTALFLQRGAQVNAAAKDGKTPLHLAV  434
            ++ +LLE GA+ N +D  GRT LH+ AK+G +++  L L+  A VN    +G+T LH A 
Sbjct  12   LVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD-NGRTALHYAA  69

Query  435  IHEHEEIVEMLLANGGDPEAAD  456
               H EIV++LL  G D    D
Sbjct  70   RSGHLEIVKLLLEKGADINVKD  91


 Score = 59.7 bits (145),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query  118  LYAAVKSENGGIIDQLLARADLNANTPDAAGQTPLYWAVKNGNEAVAGALLGRAEVDPNA  177
            L+ A K+ N  ++  LL     +AN  D  G+T L+ A KNG+  +   LL  A+V+   
Sbjct  1    LHLAAKNGNLELVKLLL-ENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVN---  56

Query  178  AGADGQTPLYLAVRNGHEGIMNRLLARGETNPDIPD  213
               +G+T L+ A R+GH  I+  LL +G  + ++ D
Sbjct  57   LKDNGRTALHYAARSGHLEIVKLLLEKG-ADINVKD  91


>CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies).  
Length=54

 Score = 60.8 bits (148),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 0/54 (0%)

Query  459  GDTPLHLAVFAGHRRLVGLLLEKDCDINVTNHCGETPLHKAVERGHRKMVEFLL  512
              T LH A  +GH  L+ LLLEK  DIN  +  GET LH A   G+ ++++ LL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54


 Score = 58.1 bits (141),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 34/55 (62%), Gaps = 1/55 (2%)

Query  249  GRTPLLWAAEKGHEEVVRLLIGSRRVNVNAADAVGRTPLWWAARNGHLPVVRLLV  303
              T L  AA  GH E++RLL+     ++NA D  G T L +AA NG++ V++LL+
Sbjct  1    ELTALHAAAASGHLELLRLLLEKG-ADINAVDGNGETALHFAASNGNVEVLKLLL  54


 Score = 56.1 bits (136),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 0/54 (0%)

Query  393  GRTTLHILAKDGDMDLTALFLQRGAQVNAAAKDGKTPLHLAVIHEHEEIVEMLL  446
              T LH  A  G ++L  L L++GA +NA   +G+T LH A  + + E++++LL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54



Lambda      K        H        a         alpha
   0.315    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789012650


Query= TCONS_00026438

Length=628
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               90.9    9e-23
CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies)            60.8    2e-12


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 90.9 bits (226),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 3/89 (3%)

Query  220  LYWAVEQGNLPFVVQLLKVNADPDVKDNQGRTPLLWAAEKGHEEVVRLLIGSRRVNVNAA  279
            L+ A + GNL  V  LL+  AD +++D  GRT L  AA+ GH E+V+LL+    VN+   
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKDN  60

Query  280  DAVGRTPLWWAARNGHLPVVRLLVRNGAD  308
               GRT L +AAR+GHL +V+LL+  GAD
Sbjct  61   ---GRTALHYAARSGHLEIVKLLLEKGAD  86


 Score = 89.0 bits (221),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 2/93 (2%)

Query  430  LHLAVIHEHEEIVEMLLANGGDPEAADHTGDTPLHLAVFAGHRRLVGLLLEKDCDINVTN  489
            LHLA  + + E+V++LL NG D    D  G T LHLA   GH  +V LLLE   D+N+ +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  490  HCGETPLHKAVERGHRKMVEFLLRNGAELEMQD  522
            + G T LH A   GH ++V+ LL  GA++ ++D
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 84.8 bits (210),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 37/93 (40%), Positives = 58/93 (62%), Gaps = 3/93 (3%)

Query  463  LHLAVFAGHRRLVGLLLEKDCDINVTNHCGETPLHKAVERGHRKMVEFLLRNGAELEMQD  522
            LHLA   G+  LV LLLE   D N+ +  G T LH A + GH ++V+ LL + A++ ++ 
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLK-  58

Query  523  DYKRTPLHRAVKAKNH-VMRLLVNKGANIHATD  554
            D  RT LH A ++ +  +++LL+ KGA+I+  D
Sbjct  59   DNGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 80.5 bits (199),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 2/93 (2%)

Query  397  LHILAKDGDMDLTALFLQRGAQVNAAAKDGKTPLHLAVIHEHEEIVEMLLANGGDPEAAD  456
            LH+ AK+G+++L  L L+ GA  N   K+G+T LHLA  + H EIV++LL +  D    D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  457  HTGDTPLHLAVFAGHRRLVGLLLEKDCDINVTN  489
            + G T LH A  +GH  +V LLLEK  DINV +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 79.4 bits (196),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 37/93 (40%), Positives = 56/93 (60%), Gaps = 3/93 (3%)

Query  496  LHKAVERGHRKMVEFLLRNGAELEMQDDYKRTPLHRAVKAKN-HVMRLLVNKGANIHATD  554
            LH A + G+ ++V+ LL NGA+  +QD   RT LH A K  +  +++LL+   A+++  D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  555  MYGQTALHIAAEAGLRDDVDFLLGHGAEAEAKD  587
              G+TALH AA +G  + V  LL  GA+   KD
Sbjct  60   -NGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 71.3 bits (175),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 37/95 (39%), Positives = 51/95 (54%), Gaps = 4/95 (4%)

Query  152  LYWAVKNGNEAVAGALLGRAEVDPNAAGADGQTPLYLAVRNGHEGIMNRLLARGETNPDI  211
            L+ A KNGN  +   LL     D N    +G+T L+LA +NGH  I+  LL   + N   
Sbjct  1    LHLAAKNGNLELVKLLL-ENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLK-  58

Query  212  PDANGQTPLYWAVEQGNLPFVVQLLKVNADPDVKD  246
               NG+T L++A   G+L  V  LL+  AD +VKD
Sbjct  59   --DNGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 69.8 bits (171),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 57/97 (59%), Gaps = 6/97 (6%)

Query  15   LFLAASKGYDTIVKLLLSTPGVRLDFKDEDGRNAVSLAAEGGHESVLQILLETGQVDVNA  74
            L LAA  G   +VKLLL   G   + +D++GR A+ LAA+ GH  ++++LLE   V++  
Sbjct  1    LHLAAKNGNLELVKLLLE-NGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKD  59

Query  75   VDTKTGQSPLCWAVKNGHAGVVSKLLAVENIDPNIPD  111
                 G++ L +A ++GH  +V KLL  +  D N+ D
Sbjct  60   ----NGRTALHYAARSGHLEIV-KLLLEKGADINVKD  91


 Score = 68.6 bits (168),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query  84   LCWAVKNGHAGVVSKLLAVENIDPNIPDANGETPLYAAVKSENGGIIDQLLARADLNANT  143
            L  A KNG+  +V KLL     D N+ D NG T L+ A K+ +  I+  LL  AD+N   
Sbjct  1    LHLAAKNGNLELV-KLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKD  59

Query  144  PDAAGQTPLYWAVKNGNEAVAGALLGRAEVDPNA  177
                G+T L++A ++G+  +   LL +   D N 
Sbjct  60   ---NGRTALHYAARSGHLEIVKLLLEK-GADINV  89


 Score = 65.1 bits (159),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 49/82 (60%), Gaps = 2/82 (2%)

Query  375  MLNVLLEKGANVNARDTKGRTTLHILAKDGDMDLTALFLQRGAQVNAAAKDGKTPLHLAV  434
            ++ +LLE GA+ N +D  GRT LH+ AK+G +++  L L+  A VN    +G+T LH A 
Sbjct  12   LVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD-NGRTALHYAA  69

Query  435  IHEHEEIVEMLLANGGDPEAAD  456
               H EIV++LL  G D    D
Sbjct  70   RSGHLEIVKLLLEKGADINVKD  91


 Score = 59.7 bits (145),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query  118  LYAAVKSENGGIIDQLLARADLNANTPDAAGQTPLYWAVKNGNEAVAGALLGRAEVDPNA  177
            L+ A K+ N  ++  LL     +AN  D  G+T L+ A KNG+  +   LL  A+V+   
Sbjct  1    LHLAAKNGNLELVKLLL-ENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVN---  56

Query  178  AGADGQTPLYLAVRNGHEGIMNRLLARGETNPDIPD  213
               +G+T L+ A R+GH  I+  LL +G  + ++ D
Sbjct  57   LKDNGRTALHYAARSGHLEIVKLLLEKG-ADINVKD  91


>CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies).  
Length=54

 Score = 60.8 bits (148),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 0/54 (0%)

Query  459  GDTPLHLAVFAGHRRLVGLLLEKDCDINVTNHCGETPLHKAVERGHRKMVEFLL  512
              T LH A  +GH  L+ LLLEK  DIN  +  GET LH A   G+ ++++ LL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54


 Score = 58.1 bits (141),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 34/55 (62%), Gaps = 1/55 (2%)

Query  249  GRTPLLWAAEKGHEEVVRLLIGSRRVNVNAADAVGRTPLWWAARNGHLPVVRLLV  303
              T L  AA  GH E++RLL+     ++NA D  G T L +AA NG++ V++LL+
Sbjct  1    ELTALHAAAASGHLELLRLLLEKG-ADINAVDGNGETALHFAASNGNVEVLKLLL  54


 Score = 56.1 bits (136),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 0/54 (0%)

Query  393  GRTTLHILAKDGDMDLTALFLQRGAQVNAAAKDGKTPLHLAVIHEHEEIVEMLL  446
              T LH  A  G ++L  L L++GA +NA   +G+T LH A  + + E++++LL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54



Lambda      K        H        a         alpha
   0.315    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789012650


Query= TCONS_00021177

Length=628
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               90.9    9e-23
CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies)            60.8    2e-12


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 90.9 bits (226),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 3/89 (3%)

Query  220  LYWAVEQGNLPFVVQLLKVNADPDVKDNQGRTPLLWAAEKGHEEVVRLLIGSRRVNVNAA  279
            L+ A + GNL  V  LL+  AD +++D  GRT L  AA+ GH E+V+LL+    VN+   
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKDN  60

Query  280  DAVGRTPLWWAARNGHLPVVRLLVRNGAD  308
               GRT L +AAR+GHL +V+LL+  GAD
Sbjct  61   ---GRTALHYAARSGHLEIVKLLLEKGAD  86


 Score = 89.0 bits (221),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 2/93 (2%)

Query  430  LHLAVIHEHEEIVEMLLANGGDPEAADHTGDTPLHLAVFAGHRRLVGLLLEKDCDINVTN  489
            LHLA  + + E+V++LL NG D    D  G T LHLA   GH  +V LLLE   D+N+ +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  490  HCGETPLHKAVERGHRKMVEFLLRNGAELEMQD  522
            + G T LH A   GH ++V+ LL  GA++ ++D
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 84.8 bits (210),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 37/93 (40%), Positives = 58/93 (62%), Gaps = 3/93 (3%)

Query  463  LHLAVFAGHRRLVGLLLEKDCDINVTNHCGETPLHKAVERGHRKMVEFLLRNGAELEMQD  522
            LHLA   G+  LV LLLE   D N+ +  G T LH A + GH ++V+ LL + A++ ++ 
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLK-  58

Query  523  DYKRTPLHRAVKAKNH-VMRLLVNKGANIHATD  554
            D  RT LH A ++ +  +++LL+ KGA+I+  D
Sbjct  59   DNGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 80.5 bits (199),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 2/93 (2%)

Query  397  LHILAKDGDMDLTALFLQRGAQVNAAAKDGKTPLHLAVIHEHEEIVEMLLANGGDPEAAD  456
            LH+ AK+G+++L  L L+ GA  N   K+G+T LHLA  + H EIV++LL +  D    D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  457  HTGDTPLHLAVFAGHRRLVGLLLEKDCDINVTN  489
            + G T LH A  +GH  +V LLLEK  DINV +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 79.4 bits (196),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 37/93 (40%), Positives = 56/93 (60%), Gaps = 3/93 (3%)

Query  496  LHKAVERGHRKMVEFLLRNGAELEMQDDYKRTPLHRAVKAKN-HVMRLLVNKGANIHATD  554
            LH A + G+ ++V+ LL NGA+  +QD   RT LH A K  +  +++LL+   A+++  D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  555  MYGQTALHIAAEAGLRDDVDFLLGHGAEAEAKD  587
              G+TALH AA +G  + V  LL  GA+   KD
Sbjct  60   -NGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 71.3 bits (175),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 37/95 (39%), Positives = 51/95 (54%), Gaps = 4/95 (4%)

Query  152  LYWAVKNGNEAVAGALLGRAEVDPNAAGADGQTPLYLAVRNGHEGIMNRLLARGETNPDI  211
            L+ A KNGN  +   LL     D N    +G+T L+LA +NGH  I+  LL   + N   
Sbjct  1    LHLAAKNGNLELVKLLL-ENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLK-  58

Query  212  PDANGQTPLYWAVEQGNLPFVVQLLKVNADPDVKD  246
               NG+T L++A   G+L  V  LL+  AD +VKD
Sbjct  59   --DNGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 69.8 bits (171),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 57/97 (59%), Gaps = 6/97 (6%)

Query  15   LFLAASKGYDTIVKLLLSTPGVRLDFKDEDGRNAVSLAAEGGHESVLQILLETGQVDVNA  74
            L LAA  G   +VKLLL   G   + +D++GR A+ LAA+ GH  ++++LLE   V++  
Sbjct  1    LHLAAKNGNLELVKLLLE-NGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKD  59

Query  75   VDTKTGQSPLCWAVKNGHAGVVSKLLAVENIDPNIPD  111
                 G++ L +A ++GH  +V KLL  +  D N+ D
Sbjct  60   ----NGRTALHYAARSGHLEIV-KLLLEKGADINVKD  91


 Score = 68.6 bits (168),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query  84   LCWAVKNGHAGVVSKLLAVENIDPNIPDANGETPLYAAVKSENGGIIDQLLARADLNANT  143
            L  A KNG+  +V KLL     D N+ D NG T L+ A K+ +  I+  LL  AD+N   
Sbjct  1    LHLAAKNGNLELV-KLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKD  59

Query  144  PDAAGQTPLYWAVKNGNEAVAGALLGRAEVDPNA  177
                G+T L++A ++G+  +   LL +   D N 
Sbjct  60   ---NGRTALHYAARSGHLEIVKLLLEK-GADINV  89


 Score = 65.1 bits (159),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 49/82 (60%), Gaps = 2/82 (2%)

Query  375  MLNVLLEKGANVNARDTKGRTTLHILAKDGDMDLTALFLQRGAQVNAAAKDGKTPLHLAV  434
            ++ +LLE GA+ N +D  GRT LH+ AK+G +++  L L+  A VN    +G+T LH A 
Sbjct  12   LVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD-NGRTALHYAA  69

Query  435  IHEHEEIVEMLLANGGDPEAAD  456
               H EIV++LL  G D    D
Sbjct  70   RSGHLEIVKLLLEKGADINVKD  91


 Score = 59.7 bits (145),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query  118  LYAAVKSENGGIIDQLLARADLNANTPDAAGQTPLYWAVKNGNEAVAGALLGRAEVDPNA  177
            L+ A K+ N  ++  LL     +AN  D  G+T L+ A KNG+  +   LL  A+V+   
Sbjct  1    LHLAAKNGNLELVKLLL-ENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVN---  56

Query  178  AGADGQTPLYLAVRNGHEGIMNRLLARGETNPDIPD  213
               +G+T L+ A R+GH  I+  LL +G  + ++ D
Sbjct  57   LKDNGRTALHYAARSGHLEIVKLLLEKG-ADINVKD  91


>CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies).  
Length=54

 Score = 60.8 bits (148),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 0/54 (0%)

Query  459  GDTPLHLAVFAGHRRLVGLLLEKDCDINVTNHCGETPLHKAVERGHRKMVEFLL  512
              T LH A  +GH  L+ LLLEK  DIN  +  GET LH A   G+ ++++ LL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54


 Score = 58.1 bits (141),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 34/55 (62%), Gaps = 1/55 (2%)

Query  249  GRTPLLWAAEKGHEEVVRLLIGSRRVNVNAADAVGRTPLWWAARNGHLPVVRLLV  303
              T L  AA  GH E++RLL+     ++NA D  G T L +AA NG++ V++LL+
Sbjct  1    ELTALHAAAASGHLELLRLLLEKG-ADINAVDGNGETALHFAASNGNVEVLKLLL  54


 Score = 56.1 bits (136),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 0/54 (0%)

Query  393  GRTTLHILAKDGDMDLTALFLQRGAQVNAAAKDGKTPLHLAVIHEHEEIVEMLL  446
              T LH  A  G ++L  L L++GA +NA   +G+T LH A  + + E++++LL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54



Lambda      K        H        a         alpha
   0.315    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789012650


Query= TCONS_00021176

Length=628
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               90.9    9e-23
CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies)            60.8    2e-12


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 90.9 bits (226),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 3/89 (3%)

Query  220  LYWAVEQGNLPFVVQLLKVNADPDVKDNQGRTPLLWAAEKGHEEVVRLLIGSRRVNVNAA  279
            L+ A + GNL  V  LL+  AD +++D  GRT L  AA+ GH E+V+LL+    VN+   
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKDN  60

Query  280  DAVGRTPLWWAARNGHLPVVRLLVRNGAD  308
               GRT L +AAR+GHL +V+LL+  GAD
Sbjct  61   ---GRTALHYAARSGHLEIVKLLLEKGAD  86


 Score = 89.0 bits (221),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 2/93 (2%)

Query  430  LHLAVIHEHEEIVEMLLANGGDPEAADHTGDTPLHLAVFAGHRRLVGLLLEKDCDINVTN  489
            LHLA  + + E+V++LL NG D    D  G T LHLA   GH  +V LLLE   D+N+ +
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  490  HCGETPLHKAVERGHRKMVEFLLRNGAELEMQD  522
            + G T LH A   GH ++V+ LL  GA++ ++D
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 84.8 bits (210),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 37/93 (40%), Positives = 58/93 (62%), Gaps = 3/93 (3%)

Query  463  LHLAVFAGHRRLVGLLLEKDCDINVTNHCGETPLHKAVERGHRKMVEFLLRNGAELEMQD  522
            LHLA   G+  LV LLLE   D N+ +  G T LH A + GH ++V+ LL + A++ ++ 
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLK-  58

Query  523  DYKRTPLHRAVKAKNH-VMRLLVNKGANIHATD  554
            D  RT LH A ++ +  +++LL+ KGA+I+  D
Sbjct  59   DNGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 80.5 bits (199),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 2/93 (2%)

Query  397  LHILAKDGDMDLTALFLQRGAQVNAAAKDGKTPLHLAVIHEHEEIVEMLLANGGDPEAAD  456
            LH+ AK+G+++L  L L+ GA  N   K+G+T LHLA  + H EIV++LL +  D    D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  457  HTGDTPLHLAVFAGHRRLVGLLLEKDCDINVTN  489
            + G T LH A  +GH  +V LLLEK  DINV +
Sbjct  60   N-GRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 79.4 bits (196),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 37/93 (40%), Positives = 56/93 (60%), Gaps = 3/93 (3%)

Query  496  LHKAVERGHRKMVEFLLRNGAELEMQDDYKRTPLHRAVKAKN-HVMRLLVNKGANIHATD  554
            LH A + G+ ++V+ LL NGA+  +QD   RT LH A K  +  +++LL+   A+++  D
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD  59

Query  555  MYGQTALHIAAEAGLRDDVDFLLGHGAEAEAKD  587
              G+TALH AA +G  + V  LL  GA+   KD
Sbjct  60   -NGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 71.3 bits (175),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 37/95 (39%), Positives = 51/95 (54%), Gaps = 4/95 (4%)

Query  152  LYWAVKNGNEAVAGALLGRAEVDPNAAGADGQTPLYLAVRNGHEGIMNRLLARGETNPDI  211
            L+ A KNGN  +   LL     D N    +G+T L+LA +NGH  I+  LL   + N   
Sbjct  1    LHLAAKNGNLELVKLLL-ENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLK-  58

Query  212  PDANGQTPLYWAVEQGNLPFVVQLLKVNADPDVKD  246
               NG+T L++A   G+L  V  LL+  AD +VKD
Sbjct  59   --DNGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 69.8 bits (171),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 57/97 (59%), Gaps = 6/97 (6%)

Query  15   LFLAASKGYDTIVKLLLSTPGVRLDFKDEDGRNAVSLAAEGGHESVLQILLETGQVDVNA  74
            L LAA  G   +VKLLL   G   + +D++GR A+ LAA+ GH  ++++LLE   V++  
Sbjct  1    LHLAAKNGNLELVKLLLE-NGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKD  59

Query  75   VDTKTGQSPLCWAVKNGHAGVVSKLLAVENIDPNIPD  111
                 G++ L +A ++GH  +V KLL  +  D N+ D
Sbjct  60   ----NGRTALHYAARSGHLEIV-KLLLEKGADINVKD  91


 Score = 68.6 bits (168),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query  84   LCWAVKNGHAGVVSKLLAVENIDPNIPDANGETPLYAAVKSENGGIIDQLLARADLNANT  143
            L  A KNG+  +V KLL     D N+ D NG T L+ A K+ +  I+  LL  AD+N   
Sbjct  1    LHLAAKNGNLELV-KLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKD  59

Query  144  PDAAGQTPLYWAVKNGNEAVAGALLGRAEVDPNA  177
                G+T L++A ++G+  +   LL +   D N 
Sbjct  60   ---NGRTALHYAARSGHLEIVKLLLEK-GADINV  89


 Score = 65.1 bits (159),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 49/82 (60%), Gaps = 2/82 (2%)

Query  375  MLNVLLEKGANVNARDTKGRTTLHILAKDGDMDLTALFLQRGAQVNAAAKDGKTPLHLAV  434
            ++ +LLE GA+ N +D  GRT LH+ AK+G +++  L L+  A VN    +G+T LH A 
Sbjct  12   LVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKD-NGRTALHYAA  69

Query  435  IHEHEEIVEMLLANGGDPEAAD  456
               H EIV++LL  G D    D
Sbjct  70   RSGHLEIVKLLLEKGADINVKD  91


 Score = 59.7 bits (145),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query  118  LYAAVKSENGGIIDQLLARADLNANTPDAAGQTPLYWAVKNGNEAVAGALLGRAEVDPNA  177
            L+ A K+ N  ++  LL     +AN  D  G+T L+ A KNG+  +   LL  A+V+   
Sbjct  1    LHLAAKNGNLELVKLLL-ENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVN---  56

Query  178  AGADGQTPLYLAVRNGHEGIMNRLLARGETNPDIPD  213
               +G+T L+ A R+GH  I+  LL +G  + ++ D
Sbjct  57   LKDNGRTALHYAARSGHLEIVKLLLEKG-ADINVKD  91


>CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies).  
Length=54

 Score = 60.8 bits (148),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 0/54 (0%)

Query  459  GDTPLHLAVFAGHRRLVGLLLEKDCDINVTNHCGETPLHKAVERGHRKMVEFLL  512
              T LH A  +GH  L+ LLLEK  DIN  +  GET LH A   G+ ++++ LL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54


 Score = 58.1 bits (141),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 23/55 (42%), Positives = 34/55 (62%), Gaps = 1/55 (2%)

Query  249  GRTPLLWAAEKGHEEVVRLLIGSRRVNVNAADAVGRTPLWWAARNGHLPVVRLLV  303
              T L  AA  GH E++RLL+     ++NA D  G T L +AA NG++ V++LL+
Sbjct  1    ELTALHAAAASGHLELLRLLLEKG-ADINAVDGNGETALHFAASNGNVEVLKLLL  54


 Score = 56.1 bits (136),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 0/54 (0%)

Query  393  GRTTLHILAKDGDMDLTALFLQRGAQVNAAAKDGKTPLHLAVIHEHEEIVEMLL  446
              T LH  A  G ++L  L L++GA +NA   +G+T LH A  + + E++++LL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL  54



Lambda      K        H        a         alpha
   0.315    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789012650


Query= TCONS_00021178

Length=343


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00026439

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00021179

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00021180

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00026440

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00021182

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00021181

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00021183

Length=304


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00026441

Length=26


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.150    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82037150


Query= TCONS_00021184

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00021185

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00026442

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00021186

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00021187

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00026443

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00026444

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00021188

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00021189

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00021190

Length=813


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1046254288


Query= TCONS_00021191

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine di...  146     8e-43
CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  68.0    1e-14


>CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate 
binding domain.  This family includes transketolase enzymes 
EC:2.2.1.1. and also partially matches to 2-oxoisovalerate 
dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes 
utilize thiamine pyrophosphate as a cofactor, suggesting there 
may be common aspects in their mechanism of catalysis.
Length=334

 Score = 146 bits (371),  Expect = 8e-43, Method: Composition-based stats.
 Identities = 58/131 (44%), Positives = 76/131 (58%), Gaps = 2/131 (2%)

Query  2    RACGWDVIDVEDGCYDVEGITAALMRARSSKEKPTFINVRTVIGVESK-FAGDAKAHGAA  60
             A GW VI+VEDG +DVE I AA+  A++ K+KPT I  RTVIG  S    G    HGA 
Sbjct  204  EAYGWHVIEVEDG-HDVEAIAAAIEEAKAEKDKPTLIKCRTVIGYGSPNKQGTHDVHGAP  262

Query  61   FGEDEVANIKRKLGLNPDEHFAVPDEVYQFFSDAGGRGRALEESWNQLLLNYSTEHPEMY  120
             G DEVA +K+KLG +P + F +P EVY  + +    G   E  WN+L   Y   +PE+ 
Sbjct  263  LGADEVAALKQKLGWDPYKPFEIPAEVYDAWKEKVAEGAKAEAEWNELFAAYKKAYPELA  322

Query  121  EEFRLRMLGRM  131
             EF  R+ G +
Sbjct  323  AEFARRLSGEL  333


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 68.0 bits (167),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 14/95 (15%)

Query  151  ASRKSAGLCCNPLAAKLENIMVGTADLTPSVNMACKGKVDFQHPELKTTCGLNGNYTGRY  210
            A+RK++G     LA +   ++ G ADL        KG +  Q               GR 
Sbjct  4    ATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLHPQGA-------------GRV  50

Query  211  IHWGIREHAMASISNGLAAFNKGTILPITSSFFMF  245
            I  GI E AM   +NG+A        P+ ++F  F
Sbjct  51   IDTGIAEQAMVGFANGMALHGPLLP-PVEATFSDF  84



Lambda      K        H        a         alpha
   0.319    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00026445

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine di...  147     8e-43


>CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate 
binding domain.  This family includes transketolase enzymes 
EC:2.2.1.1. and also partially matches to 2-oxoisovalerate 
dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes 
utilize thiamine pyrophosphate as a cofactor, suggesting there 
may be common aspects in their mechanism of catalysis.
Length=334

 Score = 147 bits (373),  Expect = 8e-43, Method: Composition-based stats.
 Identities = 58/131 (44%), Positives = 76/131 (58%), Gaps = 2/131 (2%)

Query  2    RACGWDVIDVEDGCYDVEGITAALMRARSSKEKPTFINVRTVIGVESK-FAGDAKAHGAA  60
             A GW VI+VEDG +DVE I AA+  A++ K+KPT I  RTVIG  S    G    HGA 
Sbjct  204  EAYGWHVIEVEDG-HDVEAIAAAIEEAKAEKDKPTLIKCRTVIGYGSPNKQGTHDVHGAP  262

Query  61   FGEDEVANIKRKLGLNPDEHFAVPDEVYQFFSDAGGRGRALEESWNQLLLNYSTEHPEMY  120
             G DEVA +K+KLG +P + F +P EVY  + +    G   E  WN+L   Y   +PE+ 
Sbjct  263  LGADEVAALKQKLGWDPYKPFEIPAEVYDAWKEKVAEGAKAEAEWNELFAAYKKAYPELA  322

Query  121  EEFRLRMLGRM  131
             EF  R+ G +
Sbjct  323  AEFARRLSGEL  333



Lambda      K        H        a         alpha
   0.320    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00026446

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  142     1e-40
CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine di...  146     3e-40


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 142 bits (361),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 64/214 (30%), Positives = 85/214 (40%), Gaps = 47/214 (22%)

Query  151  ASRKSAGLCCNPLAAKLENIMVGTADLTPSVNMACKGKVDFQHVSHSPVPRNIHPFTNQN  210
            A+RK++G     LA +   ++ G ADL        KG +  Q                  
Sbjct  4    ATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLHPQG-----------------  46

Query  211  CFVQPELKTTCGLNGNYTGRYIHWGIREHAMASISNGLAAFNKGTILPITSSFFMFYISK  270
                              GR I  GI E AM   +NG+A        P+ ++F  F    
Sbjct  47   -----------------AGRVIDTGIAEQAMVGFANGMALHGPLLP-PVEATFSDF----  84

Query  271  QWWLTLSKYAAPGIR-MAALQGLQQIHIATHDSIGTGEDGPTHQPIALAALYRAMPNLLY  329
                     A   IR  AAL  L    + T D IG GEDGPTHQ +   A  RA+P L  
Sbjct  85   ------LNRADDAIRHGAALGKLPVPFVVTRDPIGVGEDGPTHQSVEDLAFLRAIPGLKV  138

Query  330  IRPCDSEETAGAFIAAMQ-ATSTPTIISLSRQNL  362
            +RP D+ ET G   AA++     P ++ L RQ L
Sbjct  139  VRPSDAAETKGLLRAAIRRDGRKPVVLRLPRQLL  172


>CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate 
binding domain.  This family includes transketolase enzymes 
EC:2.2.1.1. and also partially matches to 2-oxoisovalerate 
dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes 
utilize thiamine pyrophosphate as a cofactor, suggesting there 
may be common aspects in their mechanism of catalysis.
Length=334

 Score = 146 bits (371),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 58/131 (44%), Positives = 76/131 (58%), Gaps = 2/131 (2%)

Query  2    RACGWDVIDVEDGCYDVEGITAALMRARSSKEKPTFINVRTVIGVESK-FAGDAKAHGAA  60
             A GW VI+VEDG +DVE I AA+  A++ K+KPT I  RTVIG  S    G    HGA 
Sbjct  204  EAYGWHVIEVEDG-HDVEAIAAAIEEAKAEKDKPTLIKCRTVIGYGSPNKQGTHDVHGAP  262

Query  61   FGEDEVANIKRKLGLNPDEHFAVPDEVYQFFSDAGGRGRALEESWNQLLLNYSTEHPEMY  120
             G DEVA +K+KLG +P + F +P EVY  + +    G   E  WN+L   Y   +PE+ 
Sbjct  263  LGADEVAALKQKLGWDPYKPFEIPAEVYDAWKEKVAEGAKAEAEWNELFAAYKKAYPELA  322

Query  121  EEFRLRMLGRM  131
             EF  R+ G +
Sbjct  323  AEFARRLSGEL  333



Lambda      K        H        a         alpha
   0.321    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 652562446


Query= TCONS_00021192

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  151     4e-44
CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine di...  145     3e-40


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 151 bits (384),  Expect = 4e-44, Method: Composition-based stats.
 Identities = 64/193 (33%), Positives = 85/193 (44%), Gaps = 26/193 (13%)

Query  151  ASRKSAGLCCNPLAAKLENIMVGTADLTPSVNMACKGKVDFQHPELKTTCGLNGNYTGRY  210
            A+RK++G     LA +   ++ G ADL        KG +  Q               GR 
Sbjct  4    ATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLHPQGA-------------GRV  50

Query  211  IHWGIREHAMASISNGLAAFNKGTILPITSSFFMFYISKQWWLTLSKYAAPGIR-MAALQ  269
            I  GI E AM   +NG+A        P+ ++F  F             A   IR  AAL 
Sbjct  51   IDTGIAEQAMVGFANGMALHGPLLP-PVEATFSDF----------LNRADDAIRHGAALG  99

Query  270  GLQQIHIATHDSIGTGEDGPTHQPIALAALYRAMPNLLYIRPCDSEETAGAFIAAMQ-AT  328
             L    + T D IG GEDGPTHQ +   A  RA+P L  +RP D+ ET G   AA++   
Sbjct  100  KLPVPFVVTRDPIGVGEDGPTHQSVEDLAFLRAIPGLKVVRPSDAAETKGLLRAAIRRDG  159

Query  329  STPTIISLSRQNL  341
              P ++ L RQ L
Sbjct  160  RKPVVLRLPRQLL  172


>CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate 
binding domain.  This family includes transketolase enzymes 
EC:2.2.1.1. and also partially matches to 2-oxoisovalerate 
dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes 
utilize thiamine pyrophosphate as a cofactor, suggesting there 
may be common aspects in their mechanism of catalysis.
Length=334

 Score = 145 bits (369),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 58/131 (44%), Positives = 76/131 (58%), Gaps = 2/131 (2%)

Query  2    RACGWDVIDVEDGCYDVEGITAALMRARSSKEKPTFINVRTVIGVESK-FAGDAKAHGAA  60
             A GW VI+VEDG +DVE I AA+  A++ K+KPT I  RTVIG  S    G    HGA 
Sbjct  204  EAYGWHVIEVEDG-HDVEAIAAAIEEAKAEKDKPTLIKCRTVIGYGSPNKQGTHDVHGAP  262

Query  61   FGEDEVANIKRKLGLNPDEHFAVPDEVYQFFSDAGGRGRALEESWNQLLLNYSTEHPEMY  120
             G DEVA +K+KLG +P + F +P EVY  + +    G   E  WN+L   Y   +PE+ 
Sbjct  263  LGADEVAALKQKLGWDPYKPFEIPAEVYDAWKEKVAEGAKAEAEWNELFAAYKKAYPELA  322

Query  121  EEFRLRMLGRM  131
             EF  R+ G +
Sbjct  323  AEFARRLSGEL  333



Lambda      K        H        a         alpha
   0.321    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 620767060


Query= TCONS_00026447

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine di...  413     1e-143


>CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate 
binding domain.  This family includes transketolase enzymes 
EC:2.2.1.1. and also partially matches to 2-oxoisovalerate 
dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes 
utilize thiamine pyrophosphate as a cofactor, suggesting there 
may be common aspects in their mechanism of catalysis.
Length=334

 Score = 413 bits (1063),  Expect = 1e-143, Method: Composition-based stats.
 Identities = 149/310 (48%), Positives = 198/310 (64%), Gaps = 6/310 (2%)

Query  40   AMGMTAIGIALWKYCMRYVPTNPNFFNRDRFVLSNGHTCLFQYTFLHLTGYKAMTMDQLK  99
             MGM  I   L+K  +++ P +P + NRDRFVLSNGH  +  Y+ LHLTGY  ++M+ LK
Sbjct  28   PMGMAPIAEVLFKRFLKHNPNDPKWINRDRFVLSNGHGSMLLYSLLHLTGYD-LSMEDLK  86

Query  100  SYHSEREDSLCPGHPEIEID-GVEVTTGPLGQGVANAVGLAMATKHLGAVYNRPGFSLVD  158
            S+   +  S  PGHPE     GVEVTTGPLGQG+ANAVG+A+A ++L A YNRPGF +VD
Sbjct  87   SFR--QLGSKTPGHPEFGHTAGVEVTTGPLGQGIANAVGMAIAERNLAATYNRPGFDIVD  144

Query  159  NTTWCMVGDACLQEGVALESIQLAGHWRLNNLVIIYDNNQVTCDGSVDICNSEDINAKMR  218
            + T+  +GD CL EGV+ E+  LAGH  L NL++ YD+NQ++ DG   I  +ED  A+  
Sbjct  145  HYTYVFLGDGCLMEGVSSEASSLAGHLGLGNLIVFYDDNQISIDGETKISFTEDTAARFE  204

Query  219  ACGWDVIDVEDGCYDVEGITAALMRARSSKEKPTFINVRTVIGVESK-FAGDAKAHGAAF  277
            A GW VI+VEDG +DVE I AA+  A++ K+KPT I  RTVIG  S    G    HGA  
Sbjct  205  AYGWHVIEVEDG-HDVEAIAAAIEEAKAEKDKPTLIKCRTVIGYGSPNKQGTHDVHGAPL  263

Query  278  GEDEVANIKRKLGLNPDEHFAVPDEVYQFFSDAGGRGRALEESWNQLLLNYSTEHPEMYE  337
            G DEVA +K+KLG +P + F +P EVY  + +    G   E  WN+L   Y   +PE+  
Sbjct  264  GADEVAALKQKLGWDPYKPFEIPAEVYDAWKEKVAEGAKAEAEWNELFAAYKKAYPELAA  323

Query  338  EFRLRMLGRM  347
            EF  R+ G +
Sbjct  324  EFARRLSGEL  333



Lambda      K        H        a         alpha
   0.320    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00021194

Length=707
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine di...  411     5e-140
CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  158     1e-45 


>CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate 
binding domain.  This family includes transketolase enzymes 
EC:2.2.1.1. and also partially matches to 2-oxoisovalerate 
dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes 
utilize thiamine pyrophosphate as a cofactor, suggesting there 
may be common aspects in their mechanism of catalysis.
Length=334

 Score = 411 bits (1059),  Expect = 5e-140, Method: Composition-based stats.
 Identities = 149/310 (48%), Positives = 198/310 (64%), Gaps = 6/310 (2%)

Query  40   AMGMTAIGIALWKYCMRYVPTNPNFFNRDRFVLSNGHTCLFQYTFLHLTGYKAMTMDQLK  99
             MGM  I   L+K  +++ P +P + NRDRFVLSNGH  +  Y+ LHLTGY  ++M+ LK
Sbjct  28   PMGMAPIAEVLFKRFLKHNPNDPKWINRDRFVLSNGHGSMLLYSLLHLTGYD-LSMEDLK  86

Query  100  SYHSEREDSLCPGHPEIEID-GVEVTTGPLGQGVANAVGLAMATKHLGAVYNRPGFSLVD  158
            S+   +  S  PGHPE     GVEVTTGPLGQG+ANAVG+A+A ++L A YNRPGF +VD
Sbjct  87   SFR--QLGSKTPGHPEFGHTAGVEVTTGPLGQGIANAVGMAIAERNLAATYNRPGFDIVD  144

Query  159  NTTWCMVGDACLQEGVALESIQLAGHWRLNNLVIIYDNNQVTCDGSVDICNSEDINAKMR  218
            + T+  +GD CL EGV+ E+  LAGH  L NL++ YD+NQ++ DG   I  +ED  A+  
Sbjct  145  HYTYVFLGDGCLMEGVSSEASSLAGHLGLGNLIVFYDDNQISIDGETKISFTEDTAARFE  204

Query  219  ACGWDVIDVEDGCYDVEGITAALMRARSSKEKPTFINVRTVIGVESK-FAGDAKAHGAAF  277
            A GW VI+VEDG +DVE I AA+  A++ K+KPT I  RTVIG  S    G    HGA  
Sbjct  205  AYGWHVIEVEDG-HDVEAIAAAIEEAKAEKDKPTLIKCRTVIGYGSPNKQGTHDVHGAPL  263

Query  278  GEDEVANIKRKLGLNPDEHFAVPDEVYQFFSDAGGRGRALEESWNQLLLNYSTEHPEMYE  337
            G DEVA +K+KLG +P + F +P EVY  + +    G   E  WN+L   Y   +PE+  
Sbjct  264  GADEVAALKQKLGWDPYKPFEIPAEVYDAWKEKVAEGAKAEAEWNELFAAYKKAYPELAA  323

Query  338  EFRLRMLGRM  347
            EF  R+ G +
Sbjct  324  EFARRLSGEL  333


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 158 bits (403),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 64/183 (35%), Positives = 85/183 (46%), Gaps = 16/183 (9%)

Query  367  ASRKSAGLCCNPLAAKLENIMVGTADLTPSVNMACKGKVDFQHPELKTTCGLNGNYTGRY  426
            A+RK++G     LA +   ++ G ADL        KG +  Q               GR 
Sbjct  4    ATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLHPQGA-------------GRV  50

Query  427  IHWGIREHAMASISNGLAAFNKGTILPITSSFFMFYIYAAPGIR-MAALQGLQQIHIATH  485
            I  GI E AM   +NG+A        P+ ++F  F   A   IR  AAL  L    + T 
Sbjct  51   IDTGIAEQAMVGFANGMALHGPLLP-PVEATFSDFLNRADDAIRHGAALGKLPVPFVVTR  109

Query  486  DSIGTGEDGPTHQPIALAALYRAMPNLLYIRPCDSEETAGAFIAAMQ-ATSTPTIISLSR  544
            D IG GEDGPTHQ +   A  RA+P L  +RP D+ ET G   AA++     P ++ L R
Sbjct  110  DPIGVGEDGPTHQSVEDLAFLRAIPGLKVVRPSDAAETKGLLRAAIRRDGRKPVVLRLPR  169

Query  545  QNL  547
            Q L
Sbjct  170  QLL  172



Lambda      K        H        a         alpha
   0.321    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905521060


Query= TCONS_00021195

Length=714
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine di...  441     2e-151
CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  153     7e-44 


>CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate 
binding domain.  This family includes transketolase enzymes 
EC:2.2.1.1. and also partially matches to 2-oxoisovalerate 
dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes 
utilize thiamine pyrophosphate as a cofactor, suggesting there 
may be common aspects in their mechanism of catalysis.
Length=334

 Score = 441 bits (1136),  Expect = 2e-151, Method: Composition-based stats.
 Identities = 158/334 (47%), Positives = 211/334 (63%), Gaps = 6/334 (2%)

Query  13   LALRTIRCLILDLCQQYKGGHPGGAMGMTAIGIALWKYCMRYVPTNPNFFNRDRFVLSNG  72
             A+  IR L +D  ++   GHPG  MGM  I   L+K  +++ P +P + NRDRFVLSNG
Sbjct  4    RAVNAIRALAMDAVEKANSGHPGAPMGMAPIAEVLFKRFLKHNPNDPKWINRDRFVLSNG  63

Query  73   HTCLFQYTFLHLTGYKAMTMDQLKSYHSEREDSLCPGHPEIEID-GVEVTTGPLGQGVAN  131
            H  +  Y+ LHLTGY  ++M+ LKS+   +  S  PGHPE     GVEVTTGPLGQG+AN
Sbjct  64   HGSMLLYSLLHLTGYD-LSMEDLKSFR--QLGSKTPGHPEFGHTAGVEVTTGPLGQGIAN  120

Query  132  AVGLAMATKHLGAVYNRPGFSLVDNTTWCMVGDACLQEGVALESIQLAGHWRLNNLVIIY  191
            AVG+A+A ++L A YNRPGF +VD+ T+  +GD CL EGV+ E+  LAGH  L NL++ Y
Sbjct  121  AVGMAIAERNLAATYNRPGFDIVDHYTYVFLGDGCLMEGVSSEASSLAGHLGLGNLIVFY  180

Query  192  DNNQVTCDGSVDICNSEDINAKMRACGWDVIDVEDGCYDVEGITAALMRARSSKEKPTFI  251
            D+NQ++ DG   I  +ED  A+  A GW VI+VEDG +DVE I AA+  A++ K+KPT I
Sbjct  181  DDNQISIDGETKISFTEDTAARFEAYGWHVIEVEDG-HDVEAIAAAIEEAKAEKDKPTLI  239

Query  252  NVRTVIGVESK-FAGDAKAHGAAFGEDEVANIKRKLGLNPDEHFAVPDEVYQFFSDAGGR  310
              RTVIG  S    G    HGA  G DEVA +K+KLG +P + F +P EVY  + +    
Sbjct  240  KCRTVIGYGSPNKQGTHDVHGAPLGADEVAALKQKLGWDPYKPFEIPAEVYDAWKEKVAE  299

Query  311  GRALEESWNQLLLNYSTEHPEMYEEFRLRMLGRM  344
            G   E  WN+L   Y   +PE+  EF  R+ G +
Sbjct  300  GAKAEAEWNELFAAYKKAYPELAAEFARRLSGEL  333


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 153 bits (390),  Expect = 7e-44, Method: Composition-based stats.
 Identities = 64/193 (33%), Positives = 85/193 (44%), Gaps = 26/193 (13%)

Query  364  ASRKSAGLCCNPLAAKLENIMVGTADLTPSVNMACKGKVDFQHPELKTTCGLNGNYTGRY  423
            A+RK++G     LA +   ++ G ADL        KG +  Q               GR 
Sbjct  4    ATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLHPQGA-------------GRV  50

Query  424  IHWGIREHAMASISNGLAAFNKGTILPITSSFFMFYISKQWWLTLSKYAAPGIR-MAALQ  482
            I  GI E AM   +NG+A        P+ ++F  F             A   IR  AAL 
Sbjct  51   IDTGIAEQAMVGFANGMALHGPLLP-PVEATFSDF----------LNRADDAIRHGAALG  99

Query  483  GLQQIHIATHDSIGTGEDGPTHQPIALAALYRAMPNLLYIRPCDSEETAGAFIAAMQ-AT  541
             L    + T D IG GEDGPTHQ +   A  RA+P L  +RP D+ ET G   AA++   
Sbjct  100  KLPVPFVVTRDPIGVGEDGPTHQSVEDLAFLRAIPGLKVVRPSDAAETKGLLRAAIRRDG  159

Query  542  STPTIISLSRQNL  554
              P ++ L RQ L
Sbjct  160  RKPVVLRLPRQLL  172



Lambda      K        H        a         alpha
   0.321    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0684    0.140     1.90     42.6     43.6 

Effective search space used: 902194240


Query= TCONS_00021196

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine di...  146     8e-43
CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  68.0    1e-14


>CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate 
binding domain.  This family includes transketolase enzymes 
EC:2.2.1.1. and also partially matches to 2-oxoisovalerate 
dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes 
utilize thiamine pyrophosphate as a cofactor, suggesting there 
may be common aspects in their mechanism of catalysis.
Length=334

 Score = 146 bits (371),  Expect = 8e-43, Method: Composition-based stats.
 Identities = 58/131 (44%), Positives = 76/131 (58%), Gaps = 2/131 (2%)

Query  2    RACGWDVIDVEDGCYDVEGITAALMRARSSKEKPTFINVRTVIGVESK-FAGDAKAHGAA  60
             A GW VI+VEDG +DVE I AA+  A++ K+KPT I  RTVIG  S    G    HGA 
Sbjct  204  EAYGWHVIEVEDG-HDVEAIAAAIEEAKAEKDKPTLIKCRTVIGYGSPNKQGTHDVHGAP  262

Query  61   FGEDEVANIKRKLGLNPDEHFAVPDEVYQFFSDAGGRGRALEESWNQLLLNYSTEHPEMY  120
             G DEVA +K+KLG +P + F +P EVY  + +    G   E  WN+L   Y   +PE+ 
Sbjct  263  LGADEVAALKQKLGWDPYKPFEIPAEVYDAWKEKVAEGAKAEAEWNELFAAYKKAYPELA  322

Query  121  EEFRLRMLGRM  131
             EF  R+ G +
Sbjct  323  AEFARRLSGEL  333


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 68.0 bits (167),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 14/95 (15%)

Query  151  ASRKSAGLCCNPLAAKLENIMVGTADLTPSVNMACKGKVDFQHPELKTTCGLNGNYTGRY  210
            A+RK++G     LA +   ++ G ADL        KG +  Q               GR 
Sbjct  4    ATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLHPQGA-------------GRV  50

Query  211  IHWGIREHAMASISNGLAAFNKGTILPITSSFFMF  245
            I  GI E AM   +NG+A        P+ ++F  F
Sbjct  51   IDTGIAEQAMVGFANGMALHGPLLP-PVEATFSDF  84



Lambda      K        H        a         alpha
   0.319    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00026448

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine di...  147     8e-43


>CDD:395366 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate 
binding domain.  This family includes transketolase enzymes 
EC:2.2.1.1. and also partially matches to 2-oxoisovalerate 
dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes 
utilize thiamine pyrophosphate as a cofactor, suggesting there 
may be common aspects in their mechanism of catalysis.
Length=334

 Score = 147 bits (373),  Expect = 8e-43, Method: Composition-based stats.
 Identities = 58/131 (44%), Positives = 76/131 (58%), Gaps = 2/131 (2%)

Query  2    RACGWDVIDVEDGCYDVEGITAALMRARSSKEKPTFINVRTVIGVESK-FAGDAKAHGAA  60
             A GW VI+VEDG +DVE I AA+  A++ K+KPT I  RTVIG  S    G    HGA 
Sbjct  204  EAYGWHVIEVEDG-HDVEAIAAAIEEAKAEKDKPTLIKCRTVIGYGSPNKQGTHDVHGAP  262

Query  61   FGEDEVANIKRKLGLNPDEHFAVPDEVYQFFSDAGGRGRALEESWNQLLLNYSTEHPEMY  120
             G DEVA +K+KLG +P + F +P EVY  + +    G   E  WN+L   Y   +PE+ 
Sbjct  263  LGADEVAALKQKLGWDPYKPFEIPAEVYDAWKEKVAEGAKAEAEWNELFAAYKKAYPELA  322

Query  121  EEFRLRMLGRM  131
             EF  R+ G +
Sbjct  323  AEFARRLSGEL  333



Lambda      K        H        a         alpha
   0.320    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00021197

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00026449

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00021199

Length=77
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  64.6    4e-15


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 64.6 bits (158),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 28/51 (55%), Gaps = 0/51 (0%)

Query  20   FTTNSFKTINITRAFLPHLRKRREGVIVHIGSMAAWESYPAVGAYSASKAA  70
               N     N+TRA LP + K   G IV+I S+A    YP   AYSASKAA
Sbjct  105  IDVNLTGVFNLTRAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAA  155



Lambda      K        H        a         alpha
   0.323    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00021200

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  83.8    1e-20


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 83.8 bits (208),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 52/111 (47%), Gaps = 4/111 (4%)

Query  28   KLDVTAFQETPNQKASD-AIAINRKVDVLVNNTAYTQFSTLEDMKLGDHVSQFTTNSFKT  86
            + DVT   +   +   + A+    ++D+LVNN   T      ++   D       N    
Sbjct  55   QGDVTDRAQV--KALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGV  112

Query  87   INITRAFLPHLRKRREGVIVHIGSMAAWESYPAVGAYSASKAATDA-TEAL  136
             N+TRA LP + K   G IV+I S+A    YP   AYSASKAA    T +L
Sbjct  113  FNLTRAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSL  163



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00021201

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426460 pfam01828, Peptidase_A4, Peptidase A4 family               276     4e-95


>CDD:426460 pfam01828, Peptidase_A4, Peptidase A4 family.  
Length=206

 Score = 276 bits (708),  Expect = 4e-95, Method: Composition-based stats.
 Identities = 135/192 (70%), Positives = 151/192 (79%), Gaps = 3/192 (2%)

Query  65   SNWAGAVLIG--TGYTAVTGEFVVPTPSVPSGGSSSKQYCASAWVGIDGDTCSSAILQTG  122
            SNWAGAVL G   G+T+VTG F VPTPSVPSGG  S  Y ASAWVGIDGDTCS+A+LQ G
Sbjct  1    SNWAGAVLEGPPGGFTSVTGTFTVPTPSVPSGGDPSGSYSASAWVGIDGDTCSNALLQAG  60

Query  123  VDFCIQGSSVSFDAWYEWYPDYAYDFSGISISAGDTIRVTVDATSKTAGTATVENVTKGK  182
            VDF +   SVS+DAWYEWYPDYAYDFSG  +SAGDTI VTV ATS T+GTAT+EN++ G+
Sbjct  61   VDFSVDNGSVSYDAWYEWYPDYAYDFSGFPVSAGDTITVTVTATSATSGTATIENLSTGQ  120

Query  183  TVTHTFTGGVDGNLCEYNAEWIVEDFESNGSLVPFANFGTVTFTGAQATDGGSTVGPSGA  242
            +VT T T    G LC  NAEWIVEDFES GSLVP ANFGTVTFT A AT    +VG SGA
Sbjct  121  SVTQTLTAP-SGTLCGQNAEWIVEDFESGGSLVPLANFGTVTFTDASATTSSGSVGLSGA  179

Query  243  TLIDIQQSGKVL  254
            T+IDIQQ+G VL
Sbjct  180  TIIDIQQNGTVL  191



Lambda      K        H        a         alpha
   0.312    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00021202

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00026450

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00021203

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00021204

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00021205

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00021206

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00026451

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00021208

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00026452

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00021207

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00021209

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00021210

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00026454

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00021211

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459883 pfam00636, Ribonuclease_3, Ribonuclease III domain         53.8    8e-11


>CDD:459883 pfam00636, Ribonuclease_3, Ribonuclease III domain.  
Length=101

 Score = 53.8 bits (130),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 16/99 (16%)

Query  49   LAQVGDAVLQLILVMDGYEAKGSR--GYINQIVSSTASNPNLAQVGFKAGLESVILIN--  104
            L  +GDAVL+L +    +E       G ++++ S+  SN  LA++  K GLE  +     
Sbjct  3    LEFLGDAVLELYVREYLFEKFPDLREGDLHRLRSALVSNEALAKLARKLGLEKFLTEEEL  62

Query  105  ------------PSQASVSPGVMAQTVEAILGAVYLDSQ  131
                        P +A     V+A   EA++GA+YLD  
Sbjct  63   DIRRRNNALGKGPKRADGKEKVLADAFEALIGALYLDGG  101



Lambda      K        H        a         alpha
   0.316    0.131    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00021213

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   60.3    9e-12


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 60.3 bits (147),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 27/137 (20%)

Query  93   WTSGRLESKYVFTPSSGKITFAEANIRFGSNPTSAKQGIWPAFWMLGNSIRSGTPWPGCG  152
            +T    +SK+ +    GK+   EA I+          G+  AF++      S   W    
Sbjct  20   YTGSGFQSKFYYL--YGKV---EARIKAARG-----AGVVTAFYL------SSEDWDDHD  63

Query  153  ELDILETINGQLTGYGTAHCNVYPGGICNEPNGRGGSIAIPDQSWHTWRIVWDRTPSTWQ  212
            E+D  E + G  TG      NVY  G  N    R      P   +HT+ I+W+       
Sbjct  64   EIDF-EFL-GNDTG--QVQTNVYGNGKGNRGEQRFSLWFDPTADFHTYSILWN-------  112

Query  213  SETITWYMDGQFFHQIT  229
             + ITWY+DG     + 
Sbjct  113  PDKITWYVDGVPVRTLK  129



Lambda      K        H        a         alpha
   0.317    0.134    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00026455

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00026456

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00021214

Length=370


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00021215

Length=842


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1072328958


Query= TCONS_00021216

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  116     2e-31


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 116 bits (292),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 73/295 (25%), Positives = 118/295 (40%), Gaps = 68/295 (23%)

Query  18   IGLGTW-------RSEPGQVRQAVSFALKNGYSHIDTA--------------FTKLARAS  56
            IGLGTW            +  +A+  AL+ G + IDTA                K     
Sbjct  1    IGLGTWQLGGGWGPISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDYPVK  60

Query  57   R--IVVSLAKTFSSPANCGTPTSP----TSLKVSRRPLTLWARTTLISI----SSTGQSD  106
            R  +V++  K         +  S      SL+ S + L     T  I +         + 
Sbjct  61   RDKVVIA-TKVPDGDGPWPSGGSKENIRKSLEESLKRL----GTDYIDLYYLHWPDPDTP  115

Query  107  Y-ETWRQMEEIYKAGKVKAIGVANWSIPYLEELKKKWTVVPAVNQVELHPF--LPQHALK  163
              ETW  +EE+ K GK++AIGV+N+    +E+   K  +     QVE +      +  L 
Sbjct  116  IEETWDALEELKKEGKIRAIGVSNFDAEQIEKALTKGKIPIVAVQVEYNLLRRRQEEELL  175

Query  164  EWCDKHGILLEAYSPLGS--------EGAPLMSD-----------------PAIQEMAKK  198
            E+C K+GI L AYSPLG                                   A++E+AK+
Sbjct  176  EYCKKNGIPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGTPLNLEALEALEEIAKE  235

Query  199  YGVSPATVLISYHVN--RGVVVLPKSTQENRILSNRQV--IPLSPEDMDVLNGLA  249
            +GVSPA V + + ++     + +P ++   ++  N      PLS E++  ++ L 
Sbjct  236  HGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLSDEEVARIDELL  290



Lambda      K        H        a         alpha
   0.317    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00021217

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  98.9    2e-26


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 98.9 bits (247),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 45/168 (27%), Positives = 77/168 (46%), Gaps = 31/168 (18%)

Query  1    MEEIYKAGKVKAIGVANWSIPYLEELKKKWTVVPAVNQVELHPF--LPQHALKEWCDKHG  58
            +EE+ K GK++AIGV+N+    +E+   K  +     QVE +      +  L E+C K+G
Sbjct  123  LEELKKEGKIRAIGVSNFDAEQIEKALTKGKIPIVAVQVEYNLLRRRQEEELLEYCKKNG  182

Query  59   ILLEAYSPLGS--------EGAPLMSD-----------------PAIQEMAKKYGVSPAT  93
            I L AYSPLG                                   A++E+AK++GVSPA 
Sbjct  183  IPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGTPLNLEALEALEEIAKEHGVSPAQ  242

Query  94   VLISYHVN--RGVVVLPKSTQENRILSNRQV--IPLSPEDMDVLNGLA  137
            V + + ++     + +P ++   ++  N      PLS E++  ++ L 
Sbjct  243  VALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLSDEEVARIDELL  290



Lambda      K        H        a         alpha
   0.317    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00021218

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  98.9    2e-26


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 98.9 bits (247),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 45/168 (27%), Positives = 77/168 (46%), Gaps = 31/168 (18%)

Query  1    MEEIYKAGKVKAIGVANWSIPYLEELKKKWTVVPAVNQVELHPF--LPQHALKEWCDKHG  58
            +EE+ K GK++AIGV+N+    +E+   K  +     QVE +      +  L E+C K+G
Sbjct  123  LEELKKEGKIRAIGVSNFDAEQIEKALTKGKIPIVAVQVEYNLLRRRQEEELLEYCKKNG  182

Query  59   ILLEAYSPLGS--------EGAPLMSD-----------------PAIQEMAKKYGVSPAT  93
            I L AYSPLG                                   A++E+AK++GVSPA 
Sbjct  183  IPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGTPLNLEALEALEEIAKEHGVSPAQ  242

Query  94   VLISYHVN--RGVVVLPKSTQENRILSNRQV--IPLSPEDMDVLNGLA  137
            V + + ++     + +P ++   ++  N      PLS E++  ++ L 
Sbjct  243  VALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLSDEEVARIDELL  290



Lambda      K        H        a         alpha
   0.317    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00021219

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376404 pfam00857, Isochorismatase, Isochorismatase family. Th...  109     2e-30


>CDD:376404 pfam00857, Isochorismatase, Isochorismatase family.  This family 
are hydrolase enzymes.
Length=173

 Score = 109 bits (273),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 42/170 (25%), Positives = 72/170 (42%), Gaps = 10/170 (6%)

Query  15   YAILNLDWMSLLIK-AVENTPEGQAMIASCSRWNVAVHQKSPRPLTVFSTLSFSPGQPEV  73
             A+L +D  +  +           A++ + +R   A  +       +F+     P   + 
Sbjct  1    TALLVIDMQNDFVDSGGPKVEGIAAILENINRLLKAARKAGIP--VIFTRQVPEPDDADF  58

Query  74   QPNSPFADLLRPYGEFAQGTPPVEIDERFHLDEKDLVLHKTRWSATSGNALEQILKAQGI  133
                      RP   F  GT   E+         DLV+ KTR+SA +G  L++IL+  GI
Sbjct  59   AL------KDRPSPAFPPGTTGAELVPELAPLPGDLVVDKTRFSAFAGTDLDEILRELGI  112

Query  134  KTVVISGLSLSGVVMSTIYRLFDLDYDIYVIRDNVVELPP-AQNTAFSNV  182
             T+V++G++    V+ST     D  Y++ V+ D    L P A + A   +
Sbjct  113  DTLVLAGVATDVCVLSTARDALDRGYEVVVVSDACASLSPEAHDAALERL  162



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00021220

Length=306


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00021221

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00021222

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00021223

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00021224

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00021225

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00021226

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00021238

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00021228

Length=238


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00021227

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00021230

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00021229

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00026458

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00021233

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00021232

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00021234

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00026459

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00026461

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00026460

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00021237

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00021236

Length=226


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00026462

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0799    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00021235

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00021231

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00021239

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  252     4e-80


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 252 bits (645),  Expect = 4e-80, Method: Composition-based stats.
 Identities = 116/367 (32%), Positives = 168/367 (46%), Gaps = 43/367 (12%)

Query  4    RTEVLIIGAGPTGLVLALWLTRQNVKVRIIDRQEAKPSTSRALVVHARPLELYRQLGLAD  63
             T+VLI+G GP GL+LAL L R  V+V +++R        RA  ++ R +EL RQ GL D
Sbjct  1    ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAHGLNQRTMELLRQAGLED  60

Query  64   DVVANGHKIEATNIWAEGT-HRAHVPIGDVGKGLTPYPFIHVYPQDRHERLLEDRLNAMG  122
             ++A G   E   +    T  RA +        LT  P + VYPQ   E +L +   A G
Sbjct  61   RILAEGVPHEGMGLAFYNTRRRADL------DFLTSPPRVTVYPQTELEPILVEHAEARG  114

Query  123  VTVQRNWKLVDFEEHDEYILAQLKYTSEQPSSTEKTEFCEARYIVGCDGAHSAVRHLCNI  182
              V+   +++  E+  + + A ++   +    T       A+Y+VGCDG  S VR    I
Sbjct  115  AQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYT-----VRAKYLVGCDGGRSPVRKTLGI  169

Query  183  AFEGATYPQLFYVTDI--EGSGPTMNGEAHVSL-----NGSEIMLSLAYD---TNRRARL  232
             FEG      F   D+  +    +   E            S   +   +      R    
Sbjct  170  EFEG-FEGVPFGSLDVLFDAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSAGRERYYVQ  228

Query  233  AGA----------VNEEHVTKDISELTLDDILPTTIKKMGLQIDKVNWFTTYRVHHRLAA  282
                           +E + + +  +   D+             ++ W + + V  R+A 
Sbjct  229  VPWDEEVEERPEEFTDEELKQRLRSIVGIDLALV----------EILWKSIWGVASRVAT  278

Query  283  SFRKGRAFLAGDAAHIHSPVGGQGMNTGIGDAINLAWKIAAVVHGKADASLLDSYEPERR  342
             +RKGR FLAGDAAHIH P GGQG+NT I DA NLAWK+AAV+ G+A  SLLD+Y  ER 
Sbjct  279  RYRKGRVFLAGDAAHIHPPTGGQGLNTAIQDAFNLAWKLAAVLRGQAGESLLDTYSAERL  338

Query  343  AFASTLV  349
              A  +V
Sbjct  339  PVAWAVV  345



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00021240

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00021243

Length=302


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00021241

Length=302


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00021242

Length=302


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00021244

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  211     3e-69


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 211 bits (540),  Expect = 3e-69, Method: Composition-based stats.
 Identities = 90/212 (42%), Positives = 126/212 (59%), Gaps = 9/212 (4%)

Query  48   FIVGGFFQVTGYGCRAASHFLGTSTTLYAIQTLLVLLAPTLYAASIYMILGRVIRYLHAE  107
            FI+G   +V GY  R  SH    S   + +Q +L+LLAP   AA+IYM LGR+IR L  E
Sbjct  1    FILGCILEVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRAL-GE  59

Query  108  RLSPVPVKWMTKTFVAGDILSFILQGAGGGVMSAGSANSH-DIGTYIILAGLAVQLLFFG  166
             LS +  +W T  FV GD+LS +LQ AGGG+ ++  ++S    G  I++AGLA Q+ F G
Sbjct  60   SLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENIMIAGLAFQVAFLG  119

Query  167  VFVFVAFVFHFRFSSSQGAGTSGNVPWVKSWNGLLWVLYLVSALILIRSAFRMVEFAQGF  226
            +F+ +A  FH R   S    +       + W   L  LY  S LILIRS +R+ E AQG+
Sbjct  120  IFIILAADFHRRVRRSTLRLS-------RRWKLFLLALYAASLLILIRSIYRVAELAQGW  172

Query  227  DGYLIRHEIFMYVFDTALMFVLMVVMNTVHPS  258
            DGYL+ HE++ YV D  +M + +V++N  HP 
Sbjct  173  DGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPG  204



Lambda      K        H        a         alpha
   0.328    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00021245

Length=91
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  81.7    2e-21


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 81.7 bits (203),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 32/70 (46%), Positives = 45/70 (64%), Gaps = 2/70 (3%)

Query  1    MILGRVIRYLHAERLSPVPVKWMTKTFVAGDILSFILQGAGGGVMSAGSANSH-DIGTYI  59
            M LGR+IR L  E LS +  +W T  FV GD+LS +LQ AGGG+ ++  ++S    G  I
Sbjct  48   MTLGRIIRAL-GESLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENI  106

Query  60   ILAGLAVQLL  69
            ++AGLA Q+ 
Sbjct  107  MIAGLAFQVA  116



Lambda      K        H        a         alpha
   0.332    0.145    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00021246

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  211     3e-69


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 211 bits (540),  Expect = 3e-69, Method: Composition-based stats.
 Identities = 90/212 (42%), Positives = 126/212 (59%), Gaps = 9/212 (4%)

Query  48   FIVGGFFQVTGYGCRAASHFLGTSTTLYAIQTLLVLLAPTLYAASIYMILGRVIRYLHAE  107
            FI+G   +V GY  R  SH    S   + +Q +L+LLAP   AA+IYM LGR+IR L  E
Sbjct  1    FILGCILEVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRAL-GE  59

Query  108  RLSPVPVKWMTKTFVAGDILSFILQGAGGGVMSAGSANSH-DIGTYIILAGLAVQLLFFG  166
             LS +  +W T  FV GD+LS +LQ AGGG+ ++  ++S    G  I++AGLA Q+ F G
Sbjct  60   SLSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSEAKTGENIMIAGLAFQVAFLG  119

Query  167  VFVFVAFVFHFRFSSSQGAGTSGNVPWVKSWNGLLWVLYLVSALILIRSAFRMVEFAQGF  226
            +F+ +A  FH R   S    +       + W   L  LY  S LILIRS +R+ E AQG+
Sbjct  120  IFIILAADFHRRVRRSTLRLS-------RRWKLFLLALYAASLLILIRSIYRVAELAQGW  172

Query  227  DGYLIRHEIFMYVFDTALMFVLMVVMNTVHPS  258
            DGYL+ HE++ YV D  +M + +V++N  HP 
Sbjct  173  DGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPG  204



Lambda      K        H        a         alpha
   0.328    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00021247

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.140    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00026465

Length=408


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00021248

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00021250

Length=2109
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 323     6e-99
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  105     6e-24


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 323 bits (831),  Expect = 6e-99, Method: Composition-based stats.
 Identities = 136/422 (32%), Positives = 196/422 (46%), Gaps = 39/422 (9%)

Query  1064  FEATVRTYPNRTAINYQNEQFLTYAELDSEANRMTHYLSELGVVPGDIVPLLLEKSPLMI  1123
              E      P++TA+     + LTY ELD  ANR+   L  LGV  GD V +LL  SP  +
Sbjct  1     LERQAARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWV  60

Query  1124  KAILALFKLGAAYVPLSPENPLERNAYIARDVSAKFVLTEKEHEAY------FASESDIP  1177
              A LA  K GA YVPL+P  P E  AYI  D  AK ++T+   +           E    
Sbjct  61    VAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKL  120

Query  1178  SVLLDQANLSQYGP-----------EPQLVTVSPDALAYLLYTSGSTGLPKGVMVTHGAC  1226
              ++LD+  + +  P            P      PD LAY++YTSG+TG PKGVM+TH   
Sbjct  121   VLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNL  180

Query  1227  AAAMQSIIEFEH---RQGQESRMLQFSNYVFDVSL-YDFFVALHSGGTLCIAPSERLLN-  1281
              A + SI          G + R+L       D  L       L +G T+ + P    L+ 
Sbjct  181   VANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDP  240

Query  1282  -NLAEVINEMNVNHVFLTPTVARLL------NPKDVPNLESMTVGGEQLTRDVVTTWASR  1334
               L E+I    V  ++  PT+  +L          + +L  +  GG  L  ++   +   
Sbjct  241   AALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFREL  300

Query  1335  V--TLRNGYGPTEASVLVTMKD--VDTDTTGGNIGRPLASVGAIVLEADGVRPVPYGAVG  1390
                 L NGYG TE + +VT      +   + G++GRPL      +++ +   PVP G  G
Sbjct  301   FGGALVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPGEPG  360

Query  1391  ELCFFGPQLAQGYFKKPDITSAAFIESEVLNGRRLYRSGDLARYLPNGDIECLGRKDDQV  1450
             ELC  GP + +GY   P++T+ AF E         YR+GDL R   +G +E +GRK DQ+
Sbjct  361   ELCVRGPGVMKGYLNDPELTAEAFDED------GWYRTGDLGRRDEDGYLEIVGRKKDQI  414

Query  1451  KI  1452
             K+
Sbjct  415   KL  416


 Score = 239 bits (613),  Expect = 7e-70, Method: Composition-based stats.
 Identities = 112/426 (26%), Positives = 174/426 (41%), Gaps = 58/426 (14%)

Query  44   IRHQVESNPDAPAVQCEQEQPYSYAALWQLVEHIAAA----GQFRAGRIMPLCMDPSVEF  99
            +  Q    PD  A++  + +  +Y  L +    +AA     G  +  R+  + +  S E+
Sbjct  1    LERQAARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVA-ILLPNSPEW  59

Query  100  VATVLAILRAGSAYVILDPEGSAQRNRVIAEDCGCEPVIVHEK-----------------  142
            V   LA L+AG+ YV L+P   A+    I ED G + +I  +                  
Sbjct  60   VVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVK  119

Query  143  -----YAAFFDHSVTIESIQSIQNHGQLDPPSITPSDLAYLIYTSGSTGTPKGVLLSHRA  197
                           +       +     PP   P DLAY+IYTSG+TG PKGV+L+HR 
Sbjct  120  LVLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRN  179

Query  198  VSHGIDQ--------FQLNGRKRWLLFYNPIFSAAQRT--ILATLSKGACLCLTRRD--R  245
            +   +          F L    R L    P+F     +  +L  L  GA + L       
Sbjct  180  LVANVLSIKRVRPRGFGLGPDDRVLS-TLPLFHDFGLSLGLLGPLLAGATVVLPPGFPAL  238

Query  246  LATALPEVLNNLQIDALGITPSALALL--SPGETPAC---LQQITTVGEPLSQSLVNKWA  300
               AL E++   ++  L   P+ L +L  +     A    L+ + + G PL   L  ++ 
Sbjct  239  DPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFR  298

Query  301  DRV--HLRVSYGLSECAQLNFSRQLQPGDNPRNP---GLPSDTTTAIVLEPGTMTRLSVN  355
            +     L   YGL+E      +  L   ++ R+    G P   T   +++  T   +   
Sbjct  299  ELFGGALVNGYGLTETT-GVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPG  357

Query  356  EPGELCLYGPQVANGYHQRQKETQAAFVKAPKDTHGTMMFRTGDLAVQREDGTFEILGRI  415
            EPGELC+ GP V  GY    + T  AF +          +RTGDL  + EDG  EI+GR 
Sbjct  358  EPGELCVRGPGVMKGYLNDPELTAEAFDEDG-------WYRTGDLGRRDEDGYLEIVGRK  410

Query  416  DHQVKI  421
              Q+K+
Sbjct  411  KDQIKL  416


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 105 bits (265),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 96/454 (21%), Positives = 168/454 (37%), Gaps = 54/454 (12%)

Query  646   DAYPVTALQEGI--LASTLQGSQDYLYQRVFDVR-HLDLVRLQLAFQVVFWRTELLKSTF  702
             D YP++  Q+ +  L      S  Y    V  +   LD  RL+ A Q +  R + L++ F
Sbjct  3     DEYPLSPAQKRMWFLEKLEPHSSAYNMPAVLKLTGELDPERLEKALQELINRHDALRTVF  62

Query  703   VAAAKG-FLQVVRNDFNLPWSEVSLS----------LSEYLEQDKNNGVTL-GEPFMRVA  750
             +    G  +QV+  +       + +S          +  ++++D  +   L   P  R  
Sbjct  63    IRQENGEPVQVILEERPFELEIIDISDLSESEEEEAIEAFIQRDLQSPFDLEKGPLFRAG  122

Query  751   VLDRS----ILVVSVHHALFDFWSHRFLFDDVARVYYGRR-----PEKR-PEWKSFV---  797
             +   +     L++S+HH + D  S   L  D+A +Y         P      +K +    
Sbjct  123   LFRIAENRHHLLLSMHHIIVDGVSLGILLRDLADLYQQLLKGEPLPLPPKTPYKDYAEWL  182

Query  798   -GLLHTRDTKASQDFWREHL-GEAVPTVL----------NYAPVTKTSTARRTVSQEVRA  845
                L + D +    +W E L GE     L          ++     + T      + +R 
Sbjct  183   QQYLQSEDYQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSFTLDEDTEELLRK  242

Query  846   ASSALRAPLGAIIHAAWALVLSSHIASKSVTMATAVSGRELPVPGIEALNGPTLAVVPYA  905
              + A    L  ++ AA+ L+LS +     + + T  SGR    P IE + G  +  +P  
Sbjct  243   LAKAHGTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGSGRPS--PDIERMVGMFVNTLPLR  300

Query  906   IAIDSEQTLQQLVQSVNTSLWKVIKHSQVG---VRNALAAAERQGTT-LFDTMV---NIL  958
             I     +T  +L++ V   L     H       + N L          LFD M    N L
Sbjct  301   IDPKGGKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSFQNYL  360

Query  959   VNGKVNDDISKEVFQL-YGRRPVWRTEYT-TLNVEEGATGIDVTL---TSPMEEHRLEFI  1013
                   ++       L          +Y  +L   E   G+ + +   TS  +E  +E  
Sbjct  361   GQDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYNTSLFDEETIERF  420

Query  1014  LEQFCMALNLIASNPRQTVKATNLVSETELQFML  1047
              E F   L    ++P Q +   +L+S+ E Q +L
Sbjct  421   AEHFKELLEQAIAHPSQPLSELDLLSDAEKQKLL  454


 Score = 93.6 bits (233),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 69/406 (17%), Positives = 152/406 (37%), Gaps = 49/406 (12%)

Query  1736  VRQLTTTNEILRTTFTRCHGNWYGV---VLRDATPV---VEIYEDVSNEQRQQIIKSL--  1787
             +++L   ++ LRT F R      G    V+ +  P    +    D+S  + ++ I++   
Sbjct  48    LQELINRHDALRTVFIR---QENGEPVQVILEERPFELEIIDISDLSESEEEEAIEAFIQ  104

Query  1788  DDYRFVFGK---PFIRYAILHLSTGETEIVTKLDHGLYDGTLLRIFGEHFQ-AYQ-----  1838
              D +  F     P  R  +  ++     ++  + H + DG  L I        YQ     
Sbjct  105   RDLQSPFDLEKGPLFRAGLFRIAENRHHLLLSMHHIIVDGVSLGILLRDLADLYQQLLKG  164

Query  1839  DNVPVDRFTSFKDFAFHIWQM----DKSRTLSFWKQSEKRPIA-FEFPSSSGTEPRINSV  1893
             + +P+   T +KD+A  + Q     D  +  ++W +  +  +   + P      P   S 
Sbjct  165   EPLPLPPKTPYKDYAEWLQQYLQSEDYQKDAAYWLEQLEGELPVLQLPKDY-ARPADRSF  223

Query  1894  HVHTINLEFDA--------FAKSTGATVSIIFQSIFQLWLALRSNQRDVAFDYLYTGRNI  1945
                 ++   D          AK+ G T++ +  + + L L+  + Q D+      +GR  
Sbjct  224   KGDRLSFTLDEDTEELLRKLAKAHGTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGSGRP-  282

Query  1946  DLPDPQTINGTCANFLPMRSKVDPSMPVSEFLRQTQDEFWQYTENSTVGMDEIHEACETT  2005
               PD + + G   N LP+R         SE +++ Q++      +      ++       
Sbjct  283   -SPDIERMVGMFVNTLPLRIDPKGGKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLP  341

Query  2006  REGFSNKTLFLFQP---FEPAPATAKQYEKWIV-MAKSQVTMPQ----PYAVVFEVVKTA  2057
             R         LF P   F+       Q E++ +      V+        Y +     +  
Sbjct  342   R---DLSRHPLFDPMFSFQNYLGQDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERG  398

Query  2058  DVNEYKLKFAFDKRVYEKEQVQGEAQVIEKLLAKVMENAEASVGDV  2103
                   +K  ++  ++++E ++  A+  ++LL + + +    + ++
Sbjct  399   G--GLTIKIDYNTSLFDEETIERFAEHFKELLEQAIAHPSQPLSEL  442



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2645913488


Query= TCONS_00026466

Length=1787
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 322     1e-98
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  106     3e-24


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 322 bits (828),  Expect = 1e-98, Method: Composition-based stats.
 Identities = 136/422 (32%), Positives = 196/422 (46%), Gaps = 39/422 (9%)

Query  1064  FEATVRTYPNRTAINYQNEQFLTYAELDSEANRMTHYLSELGVVPGDIVPLLLEKSPLMI  1123
              E      P++TA+     + LTY ELD  ANR+   L  LGV  GD V +LL  SP  +
Sbjct  1     LERQAARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWV  60

Query  1124  KAILALFKLGAAYVPLSPENPLERNAYIARDVSAKFVLTEKEHEAY------FASESDIP  1177
              A LA  K GA YVPL+P  P E  AYI  D  AK ++T+   +           E    
Sbjct  61    VAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKL  120

Query  1178  SVLLDQANLSQYGP-----------EPQLVTVSPDALAYLLYTSGSTGLPKGVMVTHGAC  1226
              ++LD+  + +  P            P      PD LAY++YTSG+TG PKGVM+TH   
Sbjct  121   VLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNL  180

Query  1227  AAAMQSIIEFEH---RQGQESRMLQFSNYVFDVSL-YDFFVALHSGGTLCIAPSERLLN-  1281
              A + SI          G + R+L       D  L       L +G T+ + P    L+ 
Sbjct  181   VANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDP  240

Query  1282  -NLAEVINEMNVNHVFLTPTVARLL------NPKDVPNLESMTVGGEQLTRDVVTTWASR  1334
               L E+I    V  ++  PT+  +L          + +L  +  GG  L  ++   +   
Sbjct  241   AALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFREL  300

Query  1335  V--TLRNGYGPTEASVLVTMKD--VDTDTTGGNIGRPLASVGAIVLEADGVRPVPYGAVG  1390
                 L NGYG TE + +VT      +   + G++GRPL      +++ +   PVP G  G
Sbjct  301   FGGALVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPGEPG  360

Query  1391  ELCFFGPQLAQGYFKKPDITSAAFIESEVLNGRRLYRSGDLARYLPNGDIECLGRKDDQV  1450
             ELC  GP + +GY   P++T+ AF E         YR+GDL R   +G +E +GRK DQ+
Sbjct  361   ELCVRGPGVMKGYLNDPELTAEAFDED------GWYRTGDLGRRDEDGYLEIVGRKKDQI  414

Query  1451  KI  1452
             K+
Sbjct  415   KL  416


 Score = 238 bits (610),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 112/426 (26%), Positives = 174/426 (41%), Gaps = 58/426 (14%)

Query  44   IRHQVESNPDAPAVQCEQEQPYSYAALWQLVEHIAAA----GQFRAGRIMPLCMDPSVEF  99
            +  Q    PD  A++  + +  +Y  L +    +AA     G  +  R+  + +  S E+
Sbjct  1    LERQAARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVA-ILLPNSPEW  59

Query  100  VATVLAILRAGSAYVILDPEGSAQRNRVIAEDCGCEPVIVHEK-----------------  142
            V   LA L+AG+ YV L+P   A+    I ED G + +I  +                  
Sbjct  60   VVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVK  119

Query  143  -----YAAFFDHSVTIESIQSIQNHGQLDPPSITPSDLAYLIYTSGSTGTPKGVLLSHRA  197
                           +       +     PP   P DLAY+IYTSG+TG PKGV+L+HR 
Sbjct  120  LVLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRN  179

Query  198  VSHGIDQ--------FQLNGRKRWLLFYNPIFSAAQRT--ILATLSKGACLCLTRRD--R  245
            +   +          F L    R L    P+F     +  +L  L  GA + L       
Sbjct  180  LVANVLSIKRVRPRGFGLGPDDRVLS-TLPLFHDFGLSLGLLGPLLAGATVVLPPGFPAL  238

Query  246  LATALPEVLNNLQIDALGITPSALALL--SPGETPAC---LQQITTVGEPLSQSLVNKWA  300
               AL E++   ++  L   P+ L +L  +     A    L+ + + G PL   L  ++ 
Sbjct  239  DPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFR  298

Query  301  DRV--HLRVSYGLSECAQLNFSRQLQPGDNPRNP---GLPSDTTTAIVLEPGTMTRLSVN  355
            +     L   YGL+E      +  L   ++ R+    G P   T   +++  T   +   
Sbjct  299  ELFGGALVNGYGLTETT-GVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPG  357

Query  356  EPGELCLYGPQVANGYHQRQKETQAAFVKAPKDTHGTMMFRTGDLAVQREDGTFEILGRI  415
            EPGELC+ GP V  GY    + T  AF +          +RTGDL  + EDG  EI+GR 
Sbjct  358  EPGELCVRGPGVMKGYLNDPELTAEAFDEDG-------WYRTGDLGRRDEDGYLEIVGRK  410

Query  416  DHQVKI  421
              Q+K+
Sbjct  411  KDQIKL  416


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 106 bits (267),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 99/454 (22%), Positives = 169/454 (37%), Gaps = 54/454 (12%)

Query  646   DAYPVTALQEGI--LASTLQGSQDYLYQRVFDVR-HLDLVRLQLAFQVVFWRTELLKSTF  702
             D YP++  Q+ +  L      S  Y    V  +   LD  RL+ A Q +  R + L++ F
Sbjct  3     DEYPLSPAQKRMWFLEKLEPHSSAYNMPAVLKLTGELDPERLEKALQELINRHDALRTVF  62

Query  703   VAAAKG-FLQVVRN--DFNL------PWSEVSL--SLSEYLEQDKNNGVTL-GEPFMRVA  750
             +    G  +QV+     F L        SE     ++  ++++D  +   L   P  R  
Sbjct  63    IRQENGEPVQVILEERPFELEIIDISDLSESEEEEAIEAFIQRDLQSPFDLEKGPLFRAG  122

Query  751   VLDRS----ILVVSVHHALFDFWSHRFLFDDVARVYYGRR-----PEKR-PEWKSFV---  797
             +   +     L++S+HH + D  S   L  D+A +Y         P      +K +    
Sbjct  123   LFRIAENRHHLLLSMHHIIVDGVSLGILLRDLADLYQQLLKGEPLPLPPKTPYKDYAEWL  182

Query  798   -GLLHTRDTKASQDFWREHL-GEAVPTVL----------NYAPVTKTSTARRTVSQEVRA  845
                L + D +    +W E L GE     L          ++     + T      + +R 
Sbjct  183   QQYLQSEDYQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSFTLDEDTEELLRK  242

Query  846   ASSALRAPLGAIIHAAWALVLSSHIASKSVTMATAVSGRELPVPGIEALNGPTLAVVPYA  905
              + A    L  ++ AA+ L+LS +     + + T  SGR    P IE + G  +  +P  
Sbjct  243   LAKAHGTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGSGRPS--PDIERMVGMFVNTLPLR  300

Query  906   IAIDSEQTLQQLVQSVNTSLWKVIKHSQVG---VRNALAAAERQGTT-LFDTMV---NIL  958
             I     +T  +L++ V   L     H       + N L          LFD M    N L
Sbjct  301   IDPKGGKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSFQNYL  360

Query  959   VNGKVNDDISKEVFQL-YGRRPVWRTEYT-TLNVEEGATGIDVTL---TSPMEEHRLEFI  1013
                   ++       L          +Y  +L   E   G+ + +   TS  +E  +E  
Sbjct  361   GQDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYNTSLFDEETIERF  420

Query  1014  LEQFCMALNLIASNPRQTVKATNLVSETELQFML  1047
              E F   L    ++P Q +   +L+S+ E Q +L
Sbjct  421   AEHFKELLEQAIAHPSQPLSELDLLSDAEKQKLL  454



Lambda      K        H        a         alpha
   0.318    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2256065588


Query= TCONS_00021249

Length=2109
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 323     6e-99
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  105     6e-24


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 323 bits (831),  Expect = 6e-99, Method: Composition-based stats.
 Identities = 136/422 (32%), Positives = 196/422 (46%), Gaps = 39/422 (9%)

Query  1064  FEATVRTYPNRTAINYQNEQFLTYAELDSEANRMTHYLSELGVVPGDIVPLLLEKSPLMI  1123
              E      P++TA+     + LTY ELD  ANR+   L  LGV  GD V +LL  SP  +
Sbjct  1     LERQAARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWV  60

Query  1124  KAILALFKLGAAYVPLSPENPLERNAYIARDVSAKFVLTEKEHEAY------FASESDIP  1177
              A LA  K GA YVPL+P  P E  AYI  D  AK ++T+   +           E    
Sbjct  61    VAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKL  120

Query  1178  SVLLDQANLSQYGP-----------EPQLVTVSPDALAYLLYTSGSTGLPKGVMVTHGAC  1226
              ++LD+  + +  P            P      PD LAY++YTSG+TG PKGVM+TH   
Sbjct  121   VLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNL  180

Query  1227  AAAMQSIIEFEH---RQGQESRMLQFSNYVFDVSL-YDFFVALHSGGTLCIAPSERLLN-  1281
              A + SI          G + R+L       D  L       L +G T+ + P    L+ 
Sbjct  181   VANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDP  240

Query  1282  -NLAEVINEMNVNHVFLTPTVARLL------NPKDVPNLESMTVGGEQLTRDVVTTWASR  1334
               L E+I    V  ++  PT+  +L          + +L  +  GG  L  ++   +   
Sbjct  241   AALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFREL  300

Query  1335  V--TLRNGYGPTEASVLVTMKD--VDTDTTGGNIGRPLASVGAIVLEADGVRPVPYGAVG  1390
                 L NGYG TE + +VT      +   + G++GRPL      +++ +   PVP G  G
Sbjct  301   FGGALVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPGEPG  360

Query  1391  ELCFFGPQLAQGYFKKPDITSAAFIESEVLNGRRLYRSGDLARYLPNGDIECLGRKDDQV  1450
             ELC  GP + +GY   P++T+ AF E         YR+GDL R   +G +E +GRK DQ+
Sbjct  361   ELCVRGPGVMKGYLNDPELTAEAFDED------GWYRTGDLGRRDEDGYLEIVGRKKDQI  414

Query  1451  KI  1452
             K+
Sbjct  415   KL  416


 Score = 239 bits (613),  Expect = 7e-70, Method: Composition-based stats.
 Identities = 112/426 (26%), Positives = 174/426 (41%), Gaps = 58/426 (14%)

Query  44   IRHQVESNPDAPAVQCEQEQPYSYAALWQLVEHIAAA----GQFRAGRIMPLCMDPSVEF  99
            +  Q    PD  A++  + +  +Y  L +    +AA     G  +  R+  + +  S E+
Sbjct  1    LERQAARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVA-ILLPNSPEW  59

Query  100  VATVLAILRAGSAYVILDPEGSAQRNRVIAEDCGCEPVIVHEK-----------------  142
            V   LA L+AG+ YV L+P   A+    I ED G + +I  +                  
Sbjct  60   VVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVK  119

Query  143  -----YAAFFDHSVTIESIQSIQNHGQLDPPSITPSDLAYLIYTSGSTGTPKGVLLSHRA  197
                           +       +     PP   P DLAY+IYTSG+TG PKGV+L+HR 
Sbjct  120  LVLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRN  179

Query  198  VSHGIDQ--------FQLNGRKRWLLFYNPIFSAAQRT--ILATLSKGACLCLTRRD--R  245
            +   +          F L    R L    P+F     +  +L  L  GA + L       
Sbjct  180  LVANVLSIKRVRPRGFGLGPDDRVLS-TLPLFHDFGLSLGLLGPLLAGATVVLPPGFPAL  238

Query  246  LATALPEVLNNLQIDALGITPSALALL--SPGETPAC---LQQITTVGEPLSQSLVNKWA  300
               AL E++   ++  L   P+ L +L  +     A    L+ + + G PL   L  ++ 
Sbjct  239  DPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFR  298

Query  301  DRV--HLRVSYGLSECAQLNFSRQLQPGDNPRNP---GLPSDTTTAIVLEPGTMTRLSVN  355
            +     L   YGL+E      +  L   ++ R+    G P   T   +++  T   +   
Sbjct  299  ELFGGALVNGYGLTETT-GVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPG  357

Query  356  EPGELCLYGPQVANGYHQRQKETQAAFVKAPKDTHGTMMFRTGDLAVQREDGTFEILGRI  415
            EPGELC+ GP V  GY    + T  AF +          +RTGDL  + EDG  EI+GR 
Sbjct  358  EPGELCVRGPGVMKGYLNDPELTAEAFDEDG-------WYRTGDLGRRDEDGYLEIVGRK  410

Query  416  DHQVKI  421
              Q+K+
Sbjct  411  KDQIKL  416


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 105 bits (265),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 96/454 (21%), Positives = 168/454 (37%), Gaps = 54/454 (12%)

Query  646   DAYPVTALQEGI--LASTLQGSQDYLYQRVFDVR-HLDLVRLQLAFQVVFWRTELLKSTF  702
             D YP++  Q+ +  L      S  Y    V  +   LD  RL+ A Q +  R + L++ F
Sbjct  3     DEYPLSPAQKRMWFLEKLEPHSSAYNMPAVLKLTGELDPERLEKALQELINRHDALRTVF  62

Query  703   VAAAKG-FLQVVRNDFNLPWSEVSLS----------LSEYLEQDKNNGVTL-GEPFMRVA  750
             +    G  +QV+  +       + +S          +  ++++D  +   L   P  R  
Sbjct  63    IRQENGEPVQVILEERPFELEIIDISDLSESEEEEAIEAFIQRDLQSPFDLEKGPLFRAG  122

Query  751   VLDRS----ILVVSVHHALFDFWSHRFLFDDVARVYYGRR-----PEKR-PEWKSFV---  797
             +   +     L++S+HH + D  S   L  D+A +Y         P      +K +    
Sbjct  123   LFRIAENRHHLLLSMHHIIVDGVSLGILLRDLADLYQQLLKGEPLPLPPKTPYKDYAEWL  182

Query  798   -GLLHTRDTKASQDFWREHL-GEAVPTVL----------NYAPVTKTSTARRTVSQEVRA  845
                L + D +    +W E L GE     L          ++     + T      + +R 
Sbjct  183   QQYLQSEDYQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSFTLDEDTEELLRK  242

Query  846   ASSALRAPLGAIIHAAWALVLSSHIASKSVTMATAVSGRELPVPGIEALNGPTLAVVPYA  905
              + A    L  ++ AA+ L+LS +     + + T  SGR    P IE + G  +  +P  
Sbjct  243   LAKAHGTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGSGRPS--PDIERMVGMFVNTLPLR  300

Query  906   IAIDSEQTLQQLVQSVNTSLWKVIKHSQVG---VRNALAAAERQGTT-LFDTMV---NIL  958
             I     +T  +L++ V   L     H       + N L          LFD M    N L
Sbjct  301   IDPKGGKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSFQNYL  360

Query  959   VNGKVNDDISKEVFQL-YGRRPVWRTEYT-TLNVEEGATGIDVTL---TSPMEEHRLEFI  1013
                   ++       L          +Y  +L   E   G+ + +   TS  +E  +E  
Sbjct  361   GQDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYNTSLFDEETIERF  420

Query  1014  LEQFCMALNLIASNPRQTVKATNLVSETELQFML  1047
              E F   L    ++P Q +   +L+S+ E Q +L
Sbjct  421   AEHFKELLEQAIAHPSQPLSELDLLSDAEKQKLL  454


 Score = 93.6 bits (233),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 69/406 (17%), Positives = 152/406 (37%), Gaps = 49/406 (12%)

Query  1736  VRQLTTTNEILRTTFTRCHGNWYGV---VLRDATPV---VEIYEDVSNEQRQQIIKSL--  1787
             +++L   ++ LRT F R      G    V+ +  P    +    D+S  + ++ I++   
Sbjct  48    LQELINRHDALRTVFIR---QENGEPVQVILEERPFELEIIDISDLSESEEEEAIEAFIQ  104

Query  1788  DDYRFVFGK---PFIRYAILHLSTGETEIVTKLDHGLYDGTLLRIFGEHFQ-AYQ-----  1838
              D +  F     P  R  +  ++     ++  + H + DG  L I        YQ     
Sbjct  105   RDLQSPFDLEKGPLFRAGLFRIAENRHHLLLSMHHIIVDGVSLGILLRDLADLYQQLLKG  164

Query  1839  DNVPVDRFTSFKDFAFHIWQM----DKSRTLSFWKQSEKRPIA-FEFPSSSGTEPRINSV  1893
             + +P+   T +KD+A  + Q     D  +  ++W +  +  +   + P      P   S 
Sbjct  165   EPLPLPPKTPYKDYAEWLQQYLQSEDYQKDAAYWLEQLEGELPVLQLPKDY-ARPADRSF  223

Query  1894  HVHTINLEFDA--------FAKSTGATVSIIFQSIFQLWLALRSNQRDVAFDYLYTGRNI  1945
                 ++   D          AK+ G T++ +  + + L L+  + Q D+      +GR  
Sbjct  224   KGDRLSFTLDEDTEELLRKLAKAHGTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGSGRP-  282

Query  1946  DLPDPQTINGTCANFLPMRSKVDPSMPVSEFLRQTQDEFWQYTENSTVGMDEIHEACETT  2005
               PD + + G   N LP+R         SE +++ Q++      +      ++       
Sbjct  283   -SPDIERMVGMFVNTLPLRIDPKGGKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLP  341

Query  2006  REGFSNKTLFLFQP---FEPAPATAKQYEKWIV-MAKSQVTMPQ----PYAVVFEVVKTA  2057
             R         LF P   F+       Q E++ +      V+        Y +     +  
Sbjct  342   R---DLSRHPLFDPMFSFQNYLGQDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERG  398

Query  2058  DVNEYKLKFAFDKRVYEKEQVQGEAQVIEKLLAKVMENAEASVGDV  2103
                   +K  ++  ++++E ++  A+  ++LL + + +    + ++
Sbjct  399   G--GLTIKIDYNTSLFDEETIERFAEHFKELLEQAIAHPSQPLSEL  442



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2645913488


Query= TCONS_00021251

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00026467

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369936 pfam08538, DUF1749, Protein of unknown function (DUF17...  187     4e-59


>CDD:369936 pfam08538, DUF1749, Protein of unknown function (DUF1749).  This 
is a plant and fungal family of unknown function. This family 
contains many hypothetical proteins.
Length=299

 Score = 187 bits (476),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 88/230 (38%), Positives = 118/230 (51%), Gaps = 41/230 (18%)

Query  1    MGHSTGSQCVLHYLSRPNPHTHTPAFDPYLEHVERMPLDGAIMQAPVSDREAIQWVLAEG  60
            MGHSTGSQ V++YL+  N     P             +DG I+QAPVSDREAI  V+ E 
Sbjct  110  MGHSTGSQDVMYYLTSSNE-MGRPK------------VDGGILQAPVSDREAILTVIEE-  155

Query  61   LGDRTPAEIRPVFEKLTSMAREAARDADAGTDVLLPLAMTSLVYPAHTPLSARRFLSLTS  120
                     R  ++ L ++A++         D +LP      +    TP+SA RF SLTS
Sbjct  156  ---------RKKYKDLVAVAKKMVDKGKG--DDILPREFAEKMGWE-TPVSAYRFWSLTS  203

Query  121  PESPESPSEDDLFSSDLSDEQLGKTFGMIREQGLLRGKLMVLFSGADQSVPAWVDKDTLL  180
            P        DD FSSDL DE+L KTFG I+E       L++L S  D+ VP W+DK+ LL
Sbjct  204  PGGD-----DDFFSSDLPDEKLAKTFGKIKEP------LLILMSENDEFVPEWIDKEDLL  252

Query  181  SRWRNATDHNGEAAIWDENSGIIPNASHALSNDDQAEPRNFLVNKVLGYL  230
            +RWR          +W   SGIIP A+H +      E + +L  +VL +L
Sbjct  253  ARWRRFVK----KKVWSSLSGIIPGATHNVEGKSAEEAQKWLCERVLSFL  298



Lambda      K        H        a         alpha
   0.316    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00021252

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369936 pfam08538, DUF1749, Protein of unknown function (DUF17...  187     4e-59


>CDD:369936 pfam08538, DUF1749, Protein of unknown function (DUF1749).  This 
is a plant and fungal family of unknown function. This family 
contains many hypothetical proteins.
Length=299

 Score = 187 bits (476),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 88/230 (38%), Positives = 118/230 (51%), Gaps = 41/230 (18%)

Query  1    MGHSTGSQCVLHYLSRPNPHTHTPAFDPYLEHVERMPLDGAIMQAPVSDREAIQWVLAEG  60
            MGHSTGSQ V++YL+  N     P             +DG I+QAPVSDREAI  V+ E 
Sbjct  110  MGHSTGSQDVMYYLTSSNE-MGRPK------------VDGGILQAPVSDREAILTVIEE-  155

Query  61   LGDRTPAEIRPVFEKLTSMAREAARDADAGTDVLLPLAMTSLVYPAHTPLSARRFLSLTS  120
                     R  ++ L ++A++         D +LP      +    TP+SA RF SLTS
Sbjct  156  ---------RKKYKDLVAVAKKMVDKGKG--DDILPREFAEKMGWE-TPVSAYRFWSLTS  203

Query  121  PESPESPSEDDLFSSDLSDEQLGKTFGMIREQGLLRGKLMVLFSGADQSVPAWVDKDTLL  180
            P        DD FSSDL DE+L KTFG I+E       L++L S  D+ VP W+DK+ LL
Sbjct  204  PGGD-----DDFFSSDLPDEKLAKTFGKIKEP------LLILMSENDEFVPEWIDKEDLL  252

Query  181  SRWRNATDHNGEAAIWDENSGIIPNASHALSNDDQAEPRNFLVNKVLGYL  230
            +RWR          +W   SGIIP A+H +      E + +L  +VL +L
Sbjct  253  ARWRRFVK----KKVWSSLSGIIPGATHNVEGKSAEEAQKWLCERVLSFL  298



Lambda      K        H        a         alpha
   0.316    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00021253

Length=114
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463596 pfam12464, Mac, Maltose acetyltransferase. This domain...  58.3    2e-13


>CDD:463596 pfam12464, Mac, Maltose acetyltransferase.  This domain family 
is found in bacteria, archaea and eukaryotes, and is approximately 
50 amino acids in length. The family is found in association 
with pfam00132. Mac uses acetyl-CoA as acetyl donor 
to acetylated cytoplasmic maltose.
Length=52

 Score = 58.3 bits (142),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 23/58 (40%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query  29  KMISGILYSPLASELIEGRTRARFLMSEFNGPPKPDVPFSETVAQREVTLRKLFGRVG  86
           KM++G LY     EL+  R RAR L+  +N  P  D        +RE  L++LFG VG
Sbjct  1   KMLAGELYDASDPELVAERLRARRLLRRYNNTPPED------AEEREELLKELFGSVG  52



Lambda      K        H        a         alpha
   0.320    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00026468

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463596 pfam12464, Mac, Maltose acetyltransferase. This domain...  59.0    9e-13


>CDD:463596 pfam12464, Mac, Maltose acetyltransferase.  This domain family 
is found in bacteria, archaea and eukaryotes, and is approximately 
50 amino acids in length. The family is found in association 
with pfam00132. Mac uses acetyl-CoA as acetyl donor 
to acetylated cytoplasmic maltose.
Length=52

 Score = 59.0 bits (144),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 23/58 (40%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query  29  KMISGILYSPLASELIEGRTRARFLMSEFNGPPKPDVPFSETVAQREVTLRKLFGRVG  86
           KM++G LY     EL+  R RAR L+  +N  P  D        +RE  L++LFG VG
Sbjct  1   KMLAGELYDASDPELVAERLRARRLLRRYNNTPPED------AEEREELLKELFGSVG  52



Lambda      K        H        a         alpha
   0.319    0.140    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0683    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00021254

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369936 pfam08538, DUF1749, Protein of unknown function (DUF17...  187     4e-59


>CDD:369936 pfam08538, DUF1749, Protein of unknown function (DUF1749).  This 
is a plant and fungal family of unknown function. This family 
contains many hypothetical proteins.
Length=299

 Score = 187 bits (476),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 88/230 (38%), Positives = 118/230 (51%), Gaps = 41/230 (18%)

Query  1    MGHSTGSQCVLHYLSRPNPHTHTPAFDPYLEHVERMPLDGAIMQAPVSDREAIQWVLAEG  60
            MGHSTGSQ V++YL+  N     P             +DG I+QAPVSDREAI  V+ E 
Sbjct  110  MGHSTGSQDVMYYLTSSNE-MGRPK------------VDGGILQAPVSDREAILTVIEE-  155

Query  61   LGDRTPAEIRPVFEKLTSMAREAARDADAGTDVLLPLAMTSLVYPAHTPLSARRFLSLTS  120
                     R  ++ L ++A++         D +LP      +    TP+SA RF SLTS
Sbjct  156  ---------RKKYKDLVAVAKKMVDKGKG--DDILPREFAEKMGWE-TPVSAYRFWSLTS  203

Query  121  PESPESPSEDDLFSSDLSDEQLGKTFGMIREQGLLRGKLMVLFSGADQSVPAWVDKDTLL  180
            P        DD FSSDL DE+L KTFG I+E       L++L S  D+ VP W+DK+ LL
Sbjct  204  PGGD-----DDFFSSDLPDEKLAKTFGKIKEP------LLILMSENDEFVPEWIDKEDLL  252

Query  181  SRWRNATDHNGEAAIWDENSGIIPNASHALSNDDQAEPRNFLVNKVLGYL  230
            +RWR          +W   SGIIP A+H +      E + +L  +VL +L
Sbjct  253  ARWRRFVK----KKVWSSLSGIIPGATHNVEGKSAEEAQKWLCERVLSFL  298



Lambda      K        H        a         alpha
   0.316    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00026469

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433280 pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) do...  185     7e-58


>CDD:433280 pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=145

 Score = 185 bits (473),  Expect = 7e-58, Method: Composition-based stats.
 Identities = 65/144 (45%), Positives = 77/144 (53%), Gaps = 1/144 (1%)

Query  277  EEHLQLFHKWQNDPRVAKGWNETGDLEHHRNYLRQLHEDKHVLCLFGRFDDFPFSYFEVY  336
            E  L+L H+W NDPRVA  W   G LE  R YL +L  D H     G  D  PF YFE+Y
Sbjct  3    EADLELLHRWMNDPRVAFWWMLAGPLEQVREYLARLAADPHSHPYIGLLDGEPFGYFEIY  62

Query  337  WAKEDHYGAHYDAGDYDRGRHSLVGESSVRGAYRVNAWWSSLIHYIFLDEPRTMCVVGEP  396
            WAKED  G +YDA   DRG H L+GE + RG     A   +L+HY+F D PRT  VV EP
Sbjct  63   WAKEDRLGEYYDARPGDRGIHLLIGEPAFRGRGFTTALLRALVHYLFAD-PRTRRVVVEP  121

Query  397  KATNTTVLSYENAHGLTVQKYVDL  420
               N   +      G    K +DL
Sbjct  122  DVRNERAIRLLERAGFRKVKEIDL  145



Lambda      K        H        a         alpha
   0.320    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 570537888


Query= TCONS_00021255

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433280 pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) do...  185     7e-58


>CDD:433280 pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=145

 Score = 185 bits (473),  Expect = 7e-58, Method: Composition-based stats.
 Identities = 65/144 (45%), Positives = 77/144 (53%), Gaps = 1/144 (1%)

Query  277  EEHLQLFHKWQNDPRVAKGWNETGDLEHHRNYLRQLHEDKHVLCLFGRFDDFPFSYFEVY  336
            E  L+L H+W NDPRVA  W   G LE  R YL +L  D H     G  D  PF YFE+Y
Sbjct  3    EADLELLHRWMNDPRVAFWWMLAGPLEQVREYLARLAADPHSHPYIGLLDGEPFGYFEIY  62

Query  337  WAKEDHYGAHYDAGDYDRGRHSLVGESSVRGAYRVNAWWSSLIHYIFLDEPRTMCVVGEP  396
            WAKED  G +YDA   DRG H L+GE + RG     A   +L+HY+F D PRT  VV EP
Sbjct  63   WAKEDRLGEYYDARPGDRGIHLLIGEPAFRGRGFTTALLRALVHYLFAD-PRTRRVVVEP  121

Query  397  KATNTTVLSYENAHGLTVQKYVDL  420
               N   +      G    K +DL
Sbjct  122  DVRNERAIRLLERAGFRKVKEIDL  145



Lambda      K        H        a         alpha
   0.320    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 570537888


Query= TCONS_00026470

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395302 pfam00378, ECH_1, Enoyl-CoA hydratase/isomerase. This ...  193     7e-62


>CDD:395302 pfam00378, ECH_1, Enoyl-CoA hydratase/isomerase.  This family 
contains a diverse set of enzymes including: enoyl-CoA hydratase, 
napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA 
dehydratase and dodecanoyl-CoA delta-isomerase.
Length=251

 Score = 193 bits (493),  Expect = 7e-62, Method: Composition-based stats.
 Identities = 88/250 (35%), Positives = 132/250 (53%), Gaps = 10/250 (4%)

Query  21   ILLLTLNRPEKRNCISLATSAEIQRLWTWFDTQPALYVAIITGTGESFCAGADLKEWNDL  80
            + ++TLNRPE  N +S     E+ +      T P++   ++TG  ++FCAGADLKE    
Sbjct  6    VAVITLNRPEAVNALSAELITELIQALEKLRTDPSVRAVVLTGGDKAFCAGADLKE----  61

Query  81   NARGITNEMTAPGLAGLPR----RRGSKPIIAAVNGYCLGGGFEMVANCDIVVASENATF  136
                            L          KP+IAAVNGY +GGG E+   CDI++A++NA+F
Sbjct  62   MYGEGPAHQALYRENVLDLWTLLYTCPKPVIAAVNGYAIGGGCELALACDIIIAADNASF  121

Query  137  GLPEVQRGIAAVAGSLPRLVRVLGKQRAAEIALSGLSFSASQLERWGLVNRVVEHDQLLA  196
            GL E + GI   AG   RL R++G  +A E+ L G   SA +  +WGLV++VV  DQLL 
Sbjct  122  GLNETKLGIIPGAGGTDRLPRIIGHSKAMEMLLLGRRISAQEALKWGLVDKVVPEDQLLD  181

Query  197  TAVEIATAISRNSPDSVRVTMEGLHYGWEMASVEEASSALVDQWYAKLMAGENFHEGVRA  256
             A E+A  ++  SP ++    + L+   E A           + +    + ++  EG++A
Sbjct  182  EARELAEKLAEKSPAALAQLKKALNAKLEDA--LPTQLEAEARLFYSTFSKDDIIEGLQA  239

Query  257  FVEKRKPQWR  266
            F+EKRKP W 
Sbjct  240  FLEKRKPPWE  249



Lambda      K        H        a         alpha
   0.319    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00026471

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395302 pfam00378, ECH_1, Enoyl-CoA hydratase/isomerase. This ...  193     7e-62


>CDD:395302 pfam00378, ECH_1, Enoyl-CoA hydratase/isomerase.  This family 
contains a diverse set of enzymes including: enoyl-CoA hydratase, 
napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA 
dehydratase and dodecanoyl-CoA delta-isomerase.
Length=251

 Score = 193 bits (493),  Expect = 7e-62, Method: Composition-based stats.
 Identities = 88/250 (35%), Positives = 132/250 (53%), Gaps = 10/250 (4%)

Query  21   ILLLTLNRPEKRNCISLATSAEIQRLWTWFDTQPALYVAIITGTGESFCAGADLKEWNDL  80
            + ++TLNRPE  N +S     E+ +      T P++   ++TG  ++FCAGADLKE    
Sbjct  6    VAVITLNRPEAVNALSAELITELIQALEKLRTDPSVRAVVLTGGDKAFCAGADLKE----  61

Query  81   NARGITNEMTAPGLAGLPR----RRGSKPIIAAVNGYCLGGGFEMVANCDIVVASENATF  136
                            L          KP+IAAVNGY +GGG E+   CDI++A++NA+F
Sbjct  62   MYGEGPAHQALYRENVLDLWTLLYTCPKPVIAAVNGYAIGGGCELALACDIIIAADNASF  121

Query  137  GLPEVQRGIAAVAGSLPRLVRVLGKQRAAEIALSGLSFSASQLERWGLVNRVVEHDQLLA  196
            GL E + GI   AG   RL R++G  +A E+ L G   SA +  +WGLV++VV  DQLL 
Sbjct  122  GLNETKLGIIPGAGGTDRLPRIIGHSKAMEMLLLGRRISAQEALKWGLVDKVVPEDQLLD  181

Query  197  TAVEIATAISRNSPDSVRVTMEGLHYGWEMASVEEASSALVDQWYAKLMAGENFHEGVRA  256
             A E+A  ++  SP ++    + L+   E A           + +    + ++  EG++A
Sbjct  182  EARELAEKLAEKSPAALAQLKKALNAKLEDA--LPTQLEAEARLFYSTFSKDDIIEGLQA  239

Query  257  FVEKRKPQWR  266
            F+EKRKP W 
Sbjct  240  FLEKRKPPWE  249



Lambda      K        H        a         alpha
   0.319    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00021257

Length=182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395302 pfam00378, ECH_1, Enoyl-CoA hydratase/isomerase. This ...  148     1e-45


>CDD:395302 pfam00378, ECH_1, Enoyl-CoA hydratase/isomerase.  This family 
contains a diverse set of enzymes including: enoyl-CoA hydratase, 
napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA 
dehydratase and dodecanoyl-CoA delta-isomerase.
Length=251

 Score = 148 bits (376),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 65/163 (40%), Positives = 97/163 (60%), Gaps = 2/163 (1%)

Query  16   KPIIAAVNGYCLGGGFEMVANCDIVVASENATFGLPEVQRGIAAVAGSLPRLVRVLGKQR  75
            KP+IAAVNGY +GGG E+   CDI++A++NA+FGL E + GI   AG   RL R++G  +
Sbjct  89   KPVIAAVNGYAIGGGCELALACDIIIAADNASFGLNETKLGIIPGAGGTDRLPRIIGHSK  148

Query  76   AAEIALSGLSFSASQLERWGLVNRVVEHDQLLATAVEIATAISRNSPDSVRVTMEGLHYG  135
            A E+ L G   SA +  +WGLV++VV  DQLL  A E+A  ++  SP ++    + L+  
Sbjct  149  AMEMLLLGRRISAQEALKWGLVDKVVPEDQLLDEARELAEKLAEKSPAALAQLKKALNAK  208

Query  136  WEMASVEEASSALVDQWYAKLMAGENFHEGVRAFVEKRKPQWR  178
             E A           + +    + ++  EG++AF+EKRKP W 
Sbjct  209  LEDA--LPTQLEAEARLFYSTFSKDDIIEGLQAFLEKRKPPWE  249



Lambda      K        H        a         alpha
   0.318    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00021258

Length=182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395302 pfam00378, ECH_1, Enoyl-CoA hydratase/isomerase. This ...  148     1e-45


>CDD:395302 pfam00378, ECH_1, Enoyl-CoA hydratase/isomerase.  This family 
contains a diverse set of enzymes including: enoyl-CoA hydratase, 
napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA 
dehydratase and dodecanoyl-CoA delta-isomerase.
Length=251

 Score = 148 bits (376),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 65/163 (40%), Positives = 97/163 (60%), Gaps = 2/163 (1%)

Query  16   KPIIAAVNGYCLGGGFEMVANCDIVVASENATFGLPEVQRGIAAVAGSLPRLVRVLGKQR  75
            KP+IAAVNGY +GGG E+   CDI++A++NA+FGL E + GI   AG   RL R++G  +
Sbjct  89   KPVIAAVNGYAIGGGCELALACDIIIAADNASFGLNETKLGIIPGAGGTDRLPRIIGHSK  148

Query  76   AAEIALSGLSFSASQLERWGLVNRVVEHDQLLATAVEIATAISRNSPDSVRVTMEGLHYG  135
            A E+ L G   SA +  +WGLV++VV  DQLL  A E+A  ++  SP ++    + L+  
Sbjct  149  AMEMLLLGRRISAQEALKWGLVDKVVPEDQLLDEARELAEKLAEKSPAALAQLKKALNAK  208

Query  136  WEMASVEEASSALVDQWYAKLMAGENFHEGVRAFVEKRKPQWR  178
             E A           + +    + ++  EG++AF+EKRKP W 
Sbjct  209  LEDA--LPTQLEAEARLFYSTFSKDDIIEGLQAFLEKRKPPWE  249



Lambda      K        H        a         alpha
   0.318    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00021259

Length=2083
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 236     9e-69
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  150     8e-39
CDD:425746 pfam00550, PP-binding, Phosphopantetheine attachment s...  62.2    2e-12


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 236 bits (605),  Expect = 9e-69, Method: Composition-based stats.
 Identities = 130/441 (29%), Positives = 184/441 (42%), Gaps = 64/441 (15%)

Query  232  DQAQKFPDKEAIASWDG-SLTYRQIDQYSSFVARSLIGMGVGLHDVLPVCFEKSRWTIVA  290
             QA + PDK A+   +G  LTYR++D+ ++ +A  L  +GVG  D + +    S   +VA
Sbjct  3    RQAARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVA  62

Query  291  VLAVMKAGATFVLMDPTLPLARLQNMAQQVGAKMMVSSRGQYNLA-------------TE  337
             LA +KAGA +V ++P LP   L  + +  GAK++++                       
Sbjct  63   FLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVL  122

Query  338  IIPNANVLVVEENTFSSLSAEQNGEPLPTVPSSALMYMIFTSGSTGTPKGVKISHETYTS  397
            ++    VL  E     +  A+    P P      L Y+I+TSG+TG PKGV ++H    +
Sbjct  123  VLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVA  182

Query  398  SA----IPRANAVGYTEDSRVLDFASYAFDVSIDS-MLLTLGNGGCLCIPSDEDRLNDIN  452
            +       R    G   D RVL       D  +   +L  L  G  + +P     L+   
Sbjct  183  NVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAA  242

Query  453  --GVIRRMKVNYAGLTPSVAR-ILDADVISSLSGLGLGGEAVSARDVNLWGQ--------  501
               +I R KV      P++   +L+A                S R V   G         
Sbjct  243  LLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLS-------SLRLVLSGGAPLPPELAR  295

Query  502  ------DTRIIIGYGPCECTIGCTVNSSAATGRDYI-SIG-PGNGAVIWIVDPNDHESLV  553
                     ++ GYG  E T   T           + S+G P  G  + IVD  +    V
Sbjct  296  RFRELFGGALVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDD-ETGEPV  354

Query  554  PLGAVGELLVEGPIVGQGYLNDPEKTAAAFIEDPSWLVAGHEGYPGRRGRLYKTGDLGRY  613
            P G  GEL V GP V +GYLNDPE TA AF ED                  Y+TGDLGR 
Sbjct  355  PPGEPGELCVRGPGVMKGYLNDPELTAEAFDED----------------GWYRTGDLGRR  398

Query  614  DPDGSGGIVFVGRKDTQVKLR  634
            D DG   +  VGRK  Q+KL 
Sbjct  399  DEDGY--LEIVGRKKDQIKLG  417


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 150 bits (380),  Expect = 8e-39, Method: Composition-based stats.
 Identities = 98/461 (21%), Positives = 190/461 (41%), Gaps = 54/461 (12%)

Query  875   IEDIYPCTPTQESLFTFSLKSVKP--YVAQRVLCIPSHIDLNAWRKAWEDVVAALPILRT  932
             ++D YP +P Q+ ++           Y    VL +   +D     KA ++++     LRT
Sbjct  1     VQDEYPLSPAQKRMWFLEKLEPHSSAYNMPAVLKLTGELDPERLEKALQELINRHDALRT  60

Query  933   RV--AQLQEPGLQQVVLKNS--------ISWTQASDL----AEYLENDRTQKMNLGES-L  977
                  +  EP   QV+L+          IS    S+       +++ D     +L +  L
Sbjct  61    VFIRQENGEP--VQVILEERPFELEIIDISDLSESEEEEAIEAFIQRDLQSPFDLEKGPL  118

Query  978   ARYAIVEDSADGKRYMVWTIHHVLYDGWSEPIILKQVSD----ALQGQPVEVKAQMRDFV  1033
              R  +   + +   +++ ++HH++ DG S  I+L+ ++D     L+G+P+ +      + 
Sbjct  119   FRAGLFRIAENRH-HLLLSMHHIIVDGVSLGILLRDLADLYQQLLKGEPLPLP-PKTPYK  176

Query  1034  RFV------RDSDDAAVQE-FWRRELKGAVG-----PQFPRLPSRDFMP------TPDAL  1075
              +         S+D      +W  +L+G +        + R   R F          +  
Sbjct  177   DYAEWLQQYLQSEDYQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSFTLDEDT  236

Query  1076  VERQVSLDTSSGSPFTMATLIRGAWALVASQYTGSDDIVFGETLTGRDIPLPGVESIVGP  1135
              E    L  + G+  T+  ++  A+ L+ S+YTG DDIV G   +GR  P P +E +VG 
Sbjct  237   EELLRKLAKAHGT--TLNDVLLAAYGLLLSRYTGQDDIVVGTPGSGR--PSPDIERMVGM  292

Query  1136  LIATVPIRVRILRGSTVESYLQAVQQSVLARTPYQHLG---MQNIRKVSQDAQHACETGT  1192
              + T+P+R+    G T    ++ VQ+ +L+  P+Q      + N  ++ +D         
Sbjct  293   FVNTLPLRIDPKGGKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDP  352

Query  1193  GLVIQPEP--EYVGSELGVERGDVVLEALHFN--PYPLMLACGIRKGGFRVCASFDSSLI  1248
                 Q     +    E  +   D+ + ++      Y L L    R GG  +   +++SL 
Sbjct  353   MFSFQNYLGQDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYNTSLF  412

Query  1249  ETRQMERMLAQLETACWQLSQGLSRKVDEISCLPEAELNQI  1289
             +   +ER     +    Q     S+ + E+  L +AE  ++
Sbjct  413   DEETIERFAEHFKELLEQAIAHPSQPLSELDLLSDAEKQKL  453


 Score = 99.7 bits (249),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 90/412 (22%), Positives = 153/412 (37%), Gaps = 52/412 (13%)

Query  1672  IRDVLPVTDSQDMDIRATIQPPRTSI--QYTMLYFDNSVDRERLFRSCSDLVKTHEILRT  1729
             ++D  P++ +Q          P +S      +L     +D ERL ++  +L+  H+ LRT
Sbjct  1     VQDEYPLSPAQKRMWFLEKLEPHSSAYNMPAVLKLTGELDPERLEKALQELINRHDALRT  60

Query  1730  VFISHESS-FLQVVLNELEIPVRA----HKTDKQLDQYVASLFREDIESNFQL-GCPFLR  1783
             VFI  E+   +QV+L E    +        ++ + ++ + +  + D++S F L   P  R
Sbjct  61    VFIRQENGEPVQVILEERPFELEIIDISDLSESEEEEAIEAFIQRDLQSPFDLEKGPLFR  120

Query  1784  --LFYVEGNNGESCLVIGLSHAQYDGVSLPRLLQDLDALYTG------TQLATFSPFSLY  1835
               LF +  N     L++ + H   DGVSL  LL+DL  LY          L   +P+  Y
Sbjct  121   AGLFRIAENRHH--LLLSMHHIIVDGVSLGILLRDLADLYQQLLKGEPLPLPPKTPYKDY  178

Query  1836  MAQTSEEAIQN---KAAAYWRNLLSSSSLST---LDGPSS--------------DPTDKA  1875
                  +        K AAYW   L           D                  D   + 
Sbjct  179   AEWLQQYLQSEDYQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSFTLDEDTEE  238

Query  1876  IFHTRPVNIHPLKEITTANLLTAAWAMVLARRLQTPDVTFGSVTSGRTLDIPNAENFMGP  1935
             +       +      T  ++L AA+ ++L+R     D+  G+  SGR    P+ E  +G 
Sbjct  239   LLR----KLAKAHGTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGSGRPS--PDIERMVGM  292

Query  1936  CYQLTPVRVPFHPDWTASDLLNFVQTQSAESAAHDFLGFEKI---AKLAGWASGRQGFDS  1992
                  P+R+      T S+L+  VQ     +  H    F  +    +L    S    FD 
Sbjct  293   FVNTLPLRIDPKGGKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDP  352

Query  1993  IVHHQ--DWEDFDMMPF--GGGSCRVDIANPHGDAAYPVKAVSFVKEGEIHV  2040
             +   Q    +D     F        V       +A Y +   +  + G + +
Sbjct  353   MFSFQNYLGQDSQEEEFQLSELDLSVSSV-IEEEAKYDLSLTASERGGGLTI  403


>CDD:425746 pfam00550, PP-binding, Phosphopantetheine attachment site.  A 
4'-phosphopantetheine prosthetic group is attached through 
a serine. This prosthetic group acts as a a 'swinging arm' for 
the attachment of activated fatty acid and amino-acid groups. 
This domain forms a four helix bundle. This family includes 
members not included in Prosite. The inclusion of these 
members is supported by sequence analysis and functional evidence. 
The related domain of the anguibactin system regulator 
AngR has the attachment serine replaced by an alanine.
Length=62

 Score = 62.2 bits (152),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 37/60 (62%), Gaps = 1/60 (2%)

Query  1566  LRSAWAKVLRVDPEQIDVDDNFFRRGGDSVLAMKLVSSLRAQ-GYSLSVADIFRHMRLSD  1624
             LR   A+VL V  E+ID D + F  G DS+LA++L++ L  + G  +  +D+F H  L++
Sbjct  3     LRELLAEVLGVPAEEIDPDTDLFDLGLDSLLAVELIARLEEEFGVEIPPSDLFEHPTLAE  62


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 19/62 (31%), Positives = 36/62 (58%), Gaps = 1/62 (2%)

Query  771  RRLRQAWSQTLKLQACSIRLQDNFFALGGDSLTAMKLVSVCRSQ-GLDLSVTSMFSNPTL  829
             RLR+  ++ L + A  I    + F LG DSL A++L++    + G+++  + +F +PTL
Sbjct  1    ERLRELLAEVLGVPAEEIDPDTDLFDLGLDSLLAVELIARLEEEFGVEIPPSDLFEHPTL  60

Query  830  SA  831
            + 
Sbjct  61   AE  62



Lambda      K        H        a         alpha
   0.318    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2611653652


Query= TCONS_00021260

Length=2083
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 236     9e-69
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  150     8e-39
CDD:425746 pfam00550, PP-binding, Phosphopantetheine attachment s...  62.2    2e-12


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 236 bits (605),  Expect = 9e-69, Method: Composition-based stats.
 Identities = 130/441 (29%), Positives = 184/441 (42%), Gaps = 64/441 (15%)

Query  232  DQAQKFPDKEAIASWDG-SLTYRQIDQYSSFVARSLIGMGVGLHDVLPVCFEKSRWTIVA  290
             QA + PDK A+   +G  LTYR++D+ ++ +A  L  +GVG  D + +    S   +VA
Sbjct  3    RQAARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVA  62

Query  291  VLAVMKAGATFVLMDPTLPLARLQNMAQQVGAKMMVSSRGQYNLA-------------TE  337
             LA +KAGA +V ++P LP   L  + +  GAK++++                       
Sbjct  63   FLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVL  122

Query  338  IIPNANVLVVEENTFSSLSAEQNGEPLPTVPSSALMYMIFTSGSTGTPKGVKISHETYTS  397
            ++    VL  E     +  A+    P P      L Y+I+TSG+TG PKGV ++H    +
Sbjct  123  VLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVA  182

Query  398  SA----IPRANAVGYTEDSRVLDFASYAFDVSIDS-MLLTLGNGGCLCIPSDEDRLNDIN  452
            +       R    G   D RVL       D  +   +L  L  G  + +P     L+   
Sbjct  183  NVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAA  242

Query  453  --GVIRRMKVNYAGLTPSVAR-ILDADVISSLSGLGLGGEAVSARDVNLWGQ--------  501
               +I R KV      P++   +L+A                S R V   G         
Sbjct  243  LLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLS-------SLRLVLSGGAPLPPELAR  295

Query  502  ------DTRIIIGYGPCECTIGCTVNSSAATGRDYI-SIG-PGNGAVIWIVDPNDHESLV  553
                     ++ GYG  E T   T           + S+G P  G  + IVD  +    V
Sbjct  296  RFRELFGGALVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDD-ETGEPV  354

Query  554  PLGAVGELLVEGPIVGQGYLNDPEKTAAAFIEDPSWLVAGHEGYPGRRGRLYKTGDLGRY  613
            P G  GEL V GP V +GYLNDPE TA AF ED                  Y+TGDLGR 
Sbjct  355  PPGEPGELCVRGPGVMKGYLNDPELTAEAFDED----------------GWYRTGDLGRR  398

Query  614  DPDGSGGIVFVGRKDTQVKLR  634
            D DG   +  VGRK  Q+KL 
Sbjct  399  DEDGY--LEIVGRKKDQIKLG  417


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 150 bits (380),  Expect = 8e-39, Method: Composition-based stats.
 Identities = 98/461 (21%), Positives = 190/461 (41%), Gaps = 54/461 (12%)

Query  875   IEDIYPCTPTQESLFTFSLKSVKP--YVAQRVLCIPSHIDLNAWRKAWEDVVAALPILRT  932
             ++D YP +P Q+ ++           Y    VL +   +D     KA ++++     LRT
Sbjct  1     VQDEYPLSPAQKRMWFLEKLEPHSSAYNMPAVLKLTGELDPERLEKALQELINRHDALRT  60

Query  933   RV--AQLQEPGLQQVVLKNS--------ISWTQASDL----AEYLENDRTQKMNLGES-L  977
                  +  EP   QV+L+          IS    S+       +++ D     +L +  L
Sbjct  61    VFIRQENGEP--VQVILEERPFELEIIDISDLSESEEEEAIEAFIQRDLQSPFDLEKGPL  118

Query  978   ARYAIVEDSADGKRYMVWTIHHVLYDGWSEPIILKQVSD----ALQGQPVEVKAQMRDFV  1033
              R  +   + +   +++ ++HH++ DG S  I+L+ ++D     L+G+P+ +      + 
Sbjct  119   FRAGLFRIAENRH-HLLLSMHHIIVDGVSLGILLRDLADLYQQLLKGEPLPLP-PKTPYK  176

Query  1034  RFV------RDSDDAAVQE-FWRRELKGAVG-----PQFPRLPSRDFMP------TPDAL  1075
              +         S+D      +W  +L+G +        + R   R F          +  
Sbjct  177   DYAEWLQQYLQSEDYQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSFTLDEDT  236

Query  1076  VERQVSLDTSSGSPFTMATLIRGAWALVASQYTGSDDIVFGETLTGRDIPLPGVESIVGP  1135
              E    L  + G+  T+  ++  A+ L+ S+YTG DDIV G   +GR  P P +E +VG 
Sbjct  237   EELLRKLAKAHGT--TLNDVLLAAYGLLLSRYTGQDDIVVGTPGSGR--PSPDIERMVGM  292

Query  1136  LIATVPIRVRILRGSTVESYLQAVQQSVLARTPYQHLG---MQNIRKVSQDAQHACETGT  1192
              + T+P+R+    G T    ++ VQ+ +L+  P+Q      + N  ++ +D         
Sbjct  293   FVNTLPLRIDPKGGKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDP  352

Query  1193  GLVIQPEP--EYVGSELGVERGDVVLEALHFN--PYPLMLACGIRKGGFRVCASFDSSLI  1248
                 Q     +    E  +   D+ + ++      Y L L    R GG  +   +++SL 
Sbjct  353   MFSFQNYLGQDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYNTSLF  412

Query  1249  ETRQMERMLAQLETACWQLSQGLSRKVDEISCLPEAELNQI  1289
             +   +ER     +    Q     S+ + E+  L +AE  ++
Sbjct  413   DEETIERFAEHFKELLEQAIAHPSQPLSELDLLSDAEKQKL  453


 Score = 99.7 bits (249),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 90/412 (22%), Positives = 153/412 (37%), Gaps = 52/412 (13%)

Query  1672  IRDVLPVTDSQDMDIRATIQPPRTSI--QYTMLYFDNSVDRERLFRSCSDLVKTHEILRT  1729
             ++D  P++ +Q          P +S      +L     +D ERL ++  +L+  H+ LRT
Sbjct  1     VQDEYPLSPAQKRMWFLEKLEPHSSAYNMPAVLKLTGELDPERLEKALQELINRHDALRT  60

Query  1730  VFISHESS-FLQVVLNELEIPVRA----HKTDKQLDQYVASLFREDIESNFQL-GCPFLR  1783
             VFI  E+   +QV+L E    +        ++ + ++ + +  + D++S F L   P  R
Sbjct  61    VFIRQENGEPVQVILEERPFELEIIDISDLSESEEEEAIEAFIQRDLQSPFDLEKGPLFR  120

Query  1784  --LFYVEGNNGESCLVIGLSHAQYDGVSLPRLLQDLDALYTG------TQLATFSPFSLY  1835
               LF +  N     L++ + H   DGVSL  LL+DL  LY          L   +P+  Y
Sbjct  121   AGLFRIAENRHH--LLLSMHHIIVDGVSLGILLRDLADLYQQLLKGEPLPLPPKTPYKDY  178

Query  1836  MAQTSEEAIQN---KAAAYWRNLLSSSSLST---LDGPSS--------------DPTDKA  1875
                  +        K AAYW   L           D                  D   + 
Sbjct  179   AEWLQQYLQSEDYQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSFTLDEDTEE  238

Query  1876  IFHTRPVNIHPLKEITTANLLTAAWAMVLARRLQTPDVTFGSVTSGRTLDIPNAENFMGP  1935
             +       +      T  ++L AA+ ++L+R     D+  G+  SGR    P+ E  +G 
Sbjct  239   LLR----KLAKAHGTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGSGRPS--PDIERMVGM  292

Query  1936  CYQLTPVRVPFHPDWTASDLLNFVQTQSAESAAHDFLGFEKI---AKLAGWASGRQGFDS  1992
                  P+R+      T S+L+  VQ     +  H    F  +    +L    S    FD 
Sbjct  293   FVNTLPLRIDPKGGKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDP  352

Query  1993  IVHHQ--DWEDFDMMPF--GGGSCRVDIANPHGDAAYPVKAVSFVKEGEIHV  2040
             +   Q    +D     F        V       +A Y +   +  + G + +
Sbjct  353   MFSFQNYLGQDSQEEEFQLSELDLSVSSV-IEEEAKYDLSLTASERGGGLTI  403


>CDD:425746 pfam00550, PP-binding, Phosphopantetheine attachment site.  A 
4'-phosphopantetheine prosthetic group is attached through 
a serine. This prosthetic group acts as a a 'swinging arm' for 
the attachment of activated fatty acid and amino-acid groups. 
This domain forms a four helix bundle. This family includes 
members not included in Prosite. The inclusion of these 
members is supported by sequence analysis and functional evidence. 
The related domain of the anguibactin system regulator 
AngR has the attachment serine replaced by an alanine.
Length=62

 Score = 62.2 bits (152),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 37/60 (62%), Gaps = 1/60 (2%)

Query  1566  LRSAWAKVLRVDPEQIDVDDNFFRRGGDSVLAMKLVSSLRAQ-GYSLSVADIFRHMRLSD  1624
             LR   A+VL V  E+ID D + F  G DS+LA++L++ L  + G  +  +D+F H  L++
Sbjct  3     LRELLAEVLGVPAEEIDPDTDLFDLGLDSLLAVELIARLEEEFGVEIPPSDLFEHPTLAE  62


 Score = 60.3 bits (147),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 19/62 (31%), Positives = 36/62 (58%), Gaps = 1/62 (2%)

Query  771  RRLRQAWSQTLKLQACSIRLQDNFFALGGDSLTAMKLVSVCRSQ-GLDLSVTSMFSNPTL  829
             RLR+  ++ L + A  I    + F LG DSL A++L++    + G+++  + +F +PTL
Sbjct  1    ERLRELLAEVLGVPAEEIDPDTDLFDLGLDSLLAVELIARLEEEFGVEIPPSDLFEHPTL  60

Query  830  SA  831
            + 
Sbjct  61   AE  62



Lambda      K        H        a         alpha
   0.318    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2611653652


Query= TCONS_00021261

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TR...  68.5    1e-12


>CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12).  
This family consists of several fungal specific trichothecene 
efflux pump proteins. Many of the genes involved in trichothecene 
toxin biosynthesis in Fusarium sporotrichioides are 
present within a gene cluster.It has been suggested that TRI12 
may play a role in F. sporotrichioides self-protection against 
trichothecenes.
Length=598

 Score = 68.5 bits (167),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 100/462 (22%), Positives = 188/462 (41%), Gaps = 38/462 (8%)

Query  148  FIIMVAFATL-GLILSATCHDIGTYCAAQVFYSIGFAGIIFSVDVITADTSTLRDRGLAY  206
            F+I      L G I+  T +   T  AA     +  AG   +  +   +  + + + L  
Sbjct  110  FVIATHIIGLVGAIVGCTANKFNTLLAAMTLLGVA-AGPAGASPLFIGELMSNKTKFLGL  168

Query  207  AFTSSPYIITAFGGPAAAEHF-YDSNWRWAYGCFSIVLPVVALPMFCLLRWNRHKAKKSG  265
               S+P I     GP   +      NWRW    F I + + A+ +  ++ W  H    + 
Sbjct  169  LIVSAPTIAMNGAGPYFGQRLAIQGNWRW---IFYIYIIMSAIAVLLIIIW-YHPPSFAQ  224

Query  266  LLKDKADSGRTWMESIRHYIIEFDILGVFFLAAGLVLFLLPFSIAGSTEDDWKSASIITM  325
            L   KA          R  + + D +G+F + AG  LFLL  S  G   + W SA II +
Sbjct  225  LHGKKA--------RKRDELAKLDWIGIFLVIAGTSLFLLGVSWGGKPNNPWNSAKIIGL  276

Query  326  LVIGFVCLLVFALVERFVAPV-PFLPWALLA-SRTVLGACMLDVCYQIAYYCWFNYYTSY  383
            +  G   L++FAL E F  P  P +P AL   +R  +   ++       + C    Y   
Sbjct  277  ISSGAGSLVIFALYEVFGKPEQPIIPPALFKDTRGFVCILIISSIMGAMHLCLTIIYPQQ  336

Query  384  LQVVYGTSITT---AGYITSIFDVVSGVWLFIVGFLIKKTNRFRWLLFIAVPLYILGVGL  440
            +  ++G+S+       ++++     +G  + I+G L       RW + +        +G 
Sbjct  337  VINIFGSSLKNWEETAWMSATASFGTGAGVMILGNLFHLIRHIRWQILVGALWLTAFLGA  396

Query  441  MIYFRK--PSWSVGYMIMCQIFIAFAGG-TMIICQQV----------AVLAASDHDHAAS  487
            M    +   + ++         +A+A   TM++ Q +          AV+AA+    A S
Sbjct  397  MSSINRDNKNAAIALSFFSGFVVAWAQDITMLLVQFITTDEDLGVAFAVVAAA-RPFAGS  455

Query  488  --SLAFLNVFGTM-GSAVGSSISGAIWTHTLPGALQRLLPDSVKADWQTIYDSLEEQLSY  544
              + AF++++       + S +S A+     P A    L ++ K+       +L   ++ 
Sbjct  456  IFTAAFISLYSNQYPKEIASHLSSALRGTDFPQASFPSLLEAAKSGRIDAVKAL-PGMTN  514

Query  545  ERGTLIRQAIALAYASTQSKMLIAGTAIMALSLVWMFVIRDI  586
            E   ++ QA+A +Y ++ + +     A+  + ++    +RD 
Sbjct  515  EIAAVVSQAMADSYTASYANVYYFAMALGVIPIIASLCMRDF  556



Lambda      K        H        a         alpha
   0.326    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00021262

Length=312


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00026472

Length=283


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00021263

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TR...  67.4    3e-12


>CDD:115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12).  
This family consists of several fungal specific trichothecene 
efflux pump proteins. Many of the genes involved in trichothecene 
toxin biosynthesis in Fusarium sporotrichioides are 
present within a gene cluster.It has been suggested that TRI12 
may play a role in F. sporotrichioides self-protection against 
trichothecenes.
Length=598

 Score = 67.4 bits (164),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 100/462 (22%), Positives = 188/462 (41%), Gaps = 38/462 (8%)

Query  63   FIIMVAFATL-GLILSATCHDIGTYCAAQVFYSIGFAGIIFSVDVITADTSTLRDRGLAY  121
            F+I      L G I+  T +   T  AA     +  AG   +  +   +  + + + L  
Sbjct  110  FVIATHIIGLVGAIVGCTANKFNTLLAAMTLLGVA-AGPAGASPLFIGELMSNKTKFLGL  168

Query  122  AFTSSPYIITAFGGPAAAEHF-YDSNWRWAYGCFSIVLPVVALPMFCLLRWNRHKAKKSG  180
               S+P I     GP   +      NWRW    F I + + A+ +  ++ W  H    + 
Sbjct  169  LIVSAPTIAMNGAGPYFGQRLAIQGNWRW---IFYIYIIMSAIAVLLIIIW-YHPPSFAQ  224

Query  181  LLKDKADSGRTWMESIRHYIIEFDILGVFFLAAGLVLFLLPFSIAGSTEDDWKSASIITM  240
            L   KA          R  + + D +G+F + AG  LFLL  S  G   + W SA II +
Sbjct  225  LHGKKA--------RKRDELAKLDWIGIFLVIAGTSLFLLGVSWGGKPNNPWNSAKIIGL  276

Query  241  LVIGFVCLLVFALVERFVAPV-PFLPWALLA-SRTVLGACMLDVCYQIAYYCWFNYYTSY  298
            +  G   L++FAL E F  P  P +P AL   +R  +   ++       + C    Y   
Sbjct  277  ISSGAGSLVIFALYEVFGKPEQPIIPPALFKDTRGFVCILIISSIMGAMHLCLTIIYPQQ  336

Query  299  LQVVYGTSITT---AGYITSIFDVVSGVWLFIVGFLIKKTNRFRWLLFIAVPLYILGVGL  355
            +  ++G+S+       ++++     +G  + I+G L       RW + +        +G 
Sbjct  337  VINIFGSSLKNWEETAWMSATASFGTGAGVMILGNLFHLIRHIRWQILVGALWLTAFLGA  396

Query  356  MIYFRK--PSWSVGYMIMCQIFIAFAGG-TMIICQQV----------AVLAASDHDHAAS  402
            M    +   + ++         +A+A   TM++ Q +          AV+AA+    A S
Sbjct  397  MSSINRDNKNAAIALSFFSGFVVAWAQDITMLLVQFITTDEDLGVAFAVVAAA-RPFAGS  455

Query  403  --SLAFLNVFGTM-GSAVGSSISGAIWTHTLPGALQRLLPDSVKADWQTIYDSLEEQLSY  459
              + AF++++       + S +S A+     P A    L ++ K+       +L   ++ 
Sbjct  456  IFTAAFISLYSNQYPKEIASHLSSALRGTDFPQASFPSLLEAAKSGRIDAVKAL-PGMTN  514

Query  460  ERGTLIRQAIALAYASTQSKMLIAGTAIMALSLVWMFVIRDI  501
            E   ++ QA+A +Y ++ + +     A+  + ++    +RD 
Sbjct  515  EIAAVVSQAMADSYTASYANVYYFAMALGVIPIIASLCMRDF  556



Lambda      K        H        a         alpha
   0.329    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 638935852


Query= TCONS_00021264

Length=224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404323 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase     63.0    6e-13
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  57.6    7e-11


>CDD:404323 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.  
Length=178

 Score = 63.0 bits (154),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 35/148 (24%), Positives = 58/148 (39%), Gaps = 26/148 (18%)

Query  17   KLPISREQFARELREEVHRQFQTCTPLPGAEKLLSNLNSARSTCSGERIELALASSTKTH  76
                  E + R+  EE+H +     P PG ++LL  L         +  +L + +S    
Sbjct  57   DEEEKIEFYLRKYNEELHDKL--VKPYPGIKELLEELKE-------QGYKLGIVTSKSRE  107

Query  77   TFDLKMSRPETKKLLNIIPSERRVLGDDPRVGQGRGKPAPDIYLVLWQALNSTADSGKPI  136
              +  + +   +   ++I     V GDD        KP PD  L   + L         +
Sbjct  108  NVEEFLKQLGLEDYFDVI-----VGGDD----VEGKKPDPDPILKALEQLG--------L  150

Query  137  LPSECLVFEDSVAGVEAGRRAGMRVIWV  164
             P E +   DS   +EA + AG++VI V
Sbjct  151  KPEEVIYVGDSPRDIEAAKNAGIKVIAV  178


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 57.6 bits (139),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 30/137 (22%), Positives = 47/137 (34%), Gaps = 25/137 (18%)

Query  22   REQFARELREEVHRQFQTCTPLPGAEKLLSNLNSARSTCSGERIELALASSTKTHTFDLK  81
                  EL   +          PGA + L  L           I++A+ +       +  
Sbjct  80   LTVVLVELLGVI-ALADELKLYPGAAEALKALKERG-------IKVAILTGDNPEAAEAL  131

Query  82   MSRPETKKLLNIIPSERRVLGDDPRVGQGRGKPAPDIYLVLWQALNSTADSGKPILPSEC  141
            +      +LL +      V+  D     G GKP P+IYL   + L         + P E 
Sbjct  132  L------RLLGLDDYFDVVISGDDV---GVGKPKPEIYLAALERLG--------VKPEEV  174

Query  142  LVFEDSVAGVEAGRRAG  158
            L+  D V  + A + AG
Sbjct  175  LMVGDGVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.316    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00026474

Length=314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.9    2e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.9 bits (174),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 42/185 (23%), Positives = 74/185 (40%), Gaps = 9/185 (5%)

Query  60   FVQGAFGYILIPL--HIVGQTFGQGPSEATRMTWHVGGYSLTVGTFILIAGKLGDLYGSK  117
            F+      +L P    ++ +  G  P+E       +  +SL       +AG+L D +G +
Sbjct  6    FLAALGRSLLGPALPLLLAEDLGISPTEIG---LLLTLFSLGYALAQPLAGRLSDRFGRR  62

Query  118  RILVLGWAWFGVWSVIGGCSAFTHSPVFFDTARALQGIGPALLLPNALAIAGRTYPPGKK  177
            R+L++G   F +  ++     F  S       R LQG+G   L P ALA+    +PP ++
Sbjct  63   RVLLIGLLLFALGLLLL---LFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPP-EE  118

Query  178  KNMIFSAFAVAAPLGCFTAGVVGSVFAQYVWWPWVMWTYSIGCFIIAAVGLWVIPSDYPR  237
            +       +    LG     ++G + A    W       +I   + A + L   P    +
Sbjct  119  RGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  238  CQKAA  242
              K A
Sbjct  179  RPKPA  183



Lambda      K        H        a         alpha
   0.324    0.141    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00021267

Length=314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.9    2e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.9 bits (174),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 42/185 (23%), Positives = 74/185 (40%), Gaps = 9/185 (5%)

Query  60   FVQGAFGYILIPL--HIVGQTFGQGPSEATRMTWHVGGYSLTVGTFILIAGKLGDLYGSK  117
            F+      +L P    ++ +  G  P+E       +  +SL       +AG+L D +G +
Sbjct  6    FLAALGRSLLGPALPLLLAEDLGISPTEIG---LLLTLFSLGYALAQPLAGRLSDRFGRR  62

Query  118  RILVLGWAWFGVWSVIGGCSAFTHSPVFFDTARALQGIGPALLLPNALAIAGRTYPPGKK  177
            R+L++G   F +  ++     F  S       R LQG+G   L P ALA+    +PP ++
Sbjct  63   RVLLIGLLLFALGLLLL---LFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPP-EE  118

Query  178  KNMIFSAFAVAAPLGCFTAGVVGSVFAQYVWWPWVMWTYSIGCFIIAAVGLWVIPSDYPR  237
            +       +    LG     ++G + A    W       +I   + A + L   P    +
Sbjct  119  RGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  238  CQKAA  242
              K A
Sbjct  179  RPKPA  183



Lambda      K        H        a         alpha
   0.324    0.141    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00021266

Length=242
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395719 pfam00891, Methyltransf_2, O-methyltransferase. This f...  76.3    2e-17


>CDD:395719 pfam00891, Methyltransf_2, O-methyltransferase.  This family 
includes a range of O-methyltransferases. These enzymes utilize 
S-adenosyl methionine.
Length=208

 Score = 76.3 bits (188),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 40/149 (27%), Positives = 66/149 (44%), Gaps = 7/149 (5%)

Query  29   VVIDVGGADGFVGIALAQAYANLTVFVQDSINLKKEADAKIPPALKSRVFFQPHSFFEPQ  88
             ++DVGG  G +  A+   Y      V D  ++ + A        + RV F    FF+  
Sbjct  63   SLVDVGGGTGALAQAIVSLYPGCKGIVFDLPHVVEAAPTHFSAGEEPRVTFHGGDFFK--  120

Query  89   SRLAGMADVLLLRHILHDWDDNDCLVILRHLAAVLQPGASIIVAEQVLGQSGTYDWQTER  148
              L   AD  +L+ +LHDW D  C+ +L+        G  +I+ E +LG   +    T+ 
Sbjct  121  DSLPE-ADAYILKRVLHDWSDEKCVKLLKRCYKACPAGGKVILVESLLGADPSGPLHTQ-  178

Query  149  VMRALDMQVMTPFGSKERTFDDWETLFPG  177
             + +L+M   T    +ERT  ++  L  G
Sbjct  179  -LYSLNMLAQT--EGRERTEAEYSELLTG  204



Lambda      K        H        a         alpha
   0.323    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00026475

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            68.2    3e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 68.2 bits (167),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 42/185 (23%), Positives = 74/185 (40%), Gaps = 9/185 (5%)

Query  60   FVQGAFGYILIPL--HIVGQTFGQGPSEATRMTWHVGGYSLTVGTFILIAGKLGDLYGSK  117
            F+      +L P    ++ +  G  P+E       +  +SL       +AG+L D +G +
Sbjct  6    FLAALGRSLLGPALPLLLAEDLGISPTEIG---LLLTLFSLGYALAQPLAGRLSDRFGRR  62

Query  118  RILVLGWAWFGVWSVIGGCSAFTHSPVFFDTARALQGIGPALLLPNALAIAGRTYPPGKK  177
            R+L++G   F +  ++     F  S       R LQG+G   L P ALA+    +PP ++
Sbjct  63   RVLLIGLLLFALGLLLL---LFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPP-EE  118

Query  178  KNMIFSAFAVAAPLGCFTAGVVGSVFAQYVWWPWVMWTYSIGCFIIAAVGLWVIPSDYPR  237
            +       +    LG     ++G + A    W       +I   + A + L   P    +
Sbjct  119  RGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  238  CQKAA  242
              K A
Sbjct  179  RPKPA  183



Lambda      K        H        a         alpha
   0.325    0.139    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00021269

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            86.3    7e-19


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 86.3 bits (214),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 128/366 (35%), Gaps = 30/366 (8%)

Query  60   FVQGAFGYILIPL--HIVGQTFGQGPSEATRMTWHVGGYSLTVGTFILIAGKLGDLYGSK  117
            F+      +L P    ++ +  G  P+E       +  +SL       +AG+L D +G +
Sbjct  6    FLAALGRSLLGPALPLLLAEDLGISPTEIG---LLLTLFSLGYALAQPLAGRLSDRFGRR  62

Query  118  RILVLGWAWFGVWSVIGGCSAFTHSPVFFDTARALQGIGPALLLPNALAIAGRTYPPGKK  177
            R+L++G   F +  ++     F  S       R LQG+G   L P ALA+    +PP ++
Sbjct  63   RVLLIGLLLFALGLLLL---LFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPP-EE  118

Query  178  KNMIFSAFAVAAPLGCFTAGVVGSVFAQYVWWPWVMWTYSIGCFIIAAVGLWVIPSDYPR  237
            +       +    LG     ++G + A    W       +I   + A + L   P    +
Sbjct  119  RGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  238  CQKAATLQFDYIGSVLGVAGLLLLNISWNQAPIDGWSTPYVYVLLIGGFLVLGLFELQER  297
              K A            ++ ++          +       ++     G L       +  
Sbjct  179  RPKPAEEAR--------LSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVL  230

Query  298  RAPGIRSWINFAMCLLWIQQCSSRQGPSQGILPALATPYLMAVITSGWLMAIACAAFLGG  357
                + + +   +  L             G +  L    L   +     + +A    +  
Sbjct  231  GLSALLAGLLLGLGGL------------LGAIGRLLLGRLSDRLGRRRRLLLALLLLILA  278

Query  358  CILQSTAPVEQSYWMNTFWSFVIMAWGMDISFPASTTILSDAVPVKHQGASASLVNTVIN  417
             +      +  S       + +++ +G  + FPA   ++SD  P + +G ++ L NT  +
Sbjct  279  ALGLLLLSLTLSSLW-LLLALLLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAGS  337

Query  418  YSIAIG  423
               A+G
Sbjct  338  LGGALG  343



Lambda      K        H        a         alpha
   0.324    0.137    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 661646842


Query= TCONS_00021270

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426164 pfam01261, AP_endonuc_2, Xylose isomerase-like TIM bar...  72.0    9e-16


>CDD:426164 pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel.  This 
TIM alpha/beta barrel structure is found in xylose isomerase 
and in endonuclease IV (EC:3.1.21.2). This domain is also 
found in the N termini of bacterial myo-inositol catabolism 
proteins. These are involved in the myo-inositol catabolism 
pathway, and is required for growth on myo-inositol in Rhizobium 
leguminosarum bv. viciae.
Length=248

 Score = 72.0 bits (177),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 75/218 (34%), Gaps = 55/218 (25%)

Query  1    MILIPSNFLPPDPETGEPRTTGNRRVIVSDLRQAADLGLAQSPPIRFSYEALAWG--NHV  58
            ++  P + L  DPE            +   LR+ ADL  A+   +R + E LA    N  
Sbjct  84   VVFHPGSDLGDDPEEA-------LARLAESLRELADL--AEREGVRLALEPLAGKGTNVG  134

Query  59   DTWEQSWDIVRRVDRPNFGLCLDTFNIAARVYADPASASGMTYNGAKELQRSLARLRQTV  118
            +T+E++ +I+  VD PN G+CLDT ++ A    D                         +
Sbjct  135  NTFEEALEIIDEVDSPNVGVCLDTGHLFAAGDGDLF--------------------ELRL  174

Query  119  DPKRVFLFQVVDGERLKAPLVMGHEWYVAEQPSRMSWSRNARLFAFEEGGYLPVKDIART  178
              + +    + D +                       S   R     E G +  + + R 
Sbjct  175  GDRYIGHVHLKDSKNP-------------------LGSGPDRHVPIGE-GVIDFEALFRA  214

Query  179  VFALGYGGWVSMELFSRTTFDPDPNTPYGHAQRGIASW  216
            +  +GY G +S+E F+    D  P          +   
Sbjct  215  LKEIGYDGPLSLETFN----DGPPEEGAREGLEWLREL  248



Lambda      K        H        a         alpha
   0.320    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0646    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00021271

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426164 pfam01261, AP_endonuc_2, Xylose isomerase-like TIM bar...  92.8    2e-22


>CDD:426164 pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel.  This 
TIM alpha/beta barrel structure is found in xylose isomerase 
and in endonuclease IV (EC:3.1.21.2). This domain is also 
found in the N termini of bacterial myo-inositol catabolism 
proteins. These are involved in the myo-inositol catabolism 
pathway, and is required for growth on myo-inositol in Rhizobium 
leguminosarum bv. viciae.
Length=248

 Score = 92.8 bits (231),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 61/312 (20%), Positives = 101/312 (32%), Gaps = 68/312 (22%)

Query  21   LQQAAHQGFKGIEFFYEDLETFAAQSSGGASRLNILKGALR-IRHLCTSLQLEIIALQPF  79
            L  AA  GF G+E F                R  +       ++       LEI+   P+
Sbjct  1    LAAAAELGFDGVELFTRRW-----------FRPPLSDEEAEELKAALKEHGLEIVVHAPY  49

Query  80   WFYE-GVLDEAEHNRLIDDKLRFWFEICHILHTDMILIPSNFLPPDPETGEPRTTGNRRV  138
                    DE E  + ID  L+   E+   L   +++        D              
Sbjct  50   LGDNLASPDEEEREKAIDR-LKRAIELAAALGAKLVVFHPGSDLGDDPEEA------LAR  102

Query  139  IVSDLRQAADLGLAQSPPIRFSYEALAWG--NHVDTWEQSWDIVRRVDRPNFGLCLDTFN  196
            +   LR+ ADL  A+   +R + E LA    N  +T+E++ +I+  VD PN G+CLDT +
Sbjct  103  LAESLRELADL--AEREGVRLALEPLAGKGTNVGNTFEEALEIIDEVDSPNVGVCLDTGH  160

Query  197  IAARVYADPASASGMTYNGAKELQRSLARLRQTVDPKRVFLFQVVDGERLKAPLVMGHEW  256
            + A    D                         +  + +    + D +            
Sbjct  161  LFAAGDGDLF--------------------ELRLGDRYIGHVHLKDSKNP----------  190

Query  257  YVAEQPSRMSWSRNARLFAFEEGGYLPVKDIARTVFALGYGGWVSMELFSRTTFDPDPNT  316
                       S   R     E G +  + + R +  +GY G +S+E F+    D  P  
Sbjct  191  ---------LGSGPDRHVPIGE-GVIDFEALFRALKEIGYDGPLSLETFN----DGPPEE  236

Query  317  PYGHAQRGIASW  328
                    +   
Sbjct  237  GAREGLEWLREL  248



Lambda      K        H        a         alpha
   0.323    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00021272

Length=348


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00026476

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00021273

Length=348


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00021274

Length=348


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00026477

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00021275

Length=446


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00026478

Length=592
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  210     1e-65


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 210 bits (537),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 78/176 (44%), Positives = 110/176 (63%), Gaps = 9/176 (5%)

Query  142  RSIAHWLVDHGAQNLILLSRSAGDLDLAQNQNAEGALFVRELRAAGCRVKPVSCDIALAS  201
            R +A WL + GA++L+LLSRSA     AQ         + EL A G  V  V+CD++   
Sbjct  14   RELARWLAERGARHLVLLSRSAAPRPDAQA-------LIAELEARGVEVVVVACDVSDPD  66

Query  202  SLAKALRACEDEGLPPVRGVIQGAMLLRDAIFEQMTLADWKSGLAPKLNGSWNLHTEFST  261
            ++A  L   + EG PP+RGVI  A +LRDA+ E MT  DW+  LAPK+ G+WNLH     
Sbjct  67   AVAALLAEIKAEG-PPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLHEATPD  125

Query  262  RGGLDFFVMLSSVSGVIGIASQTNYAAGGSYEDALARWRQARGLPGVSIDLGPISD  317
               LDFFV+ SS++G++G   Q NYAA  ++ DALA +R+++GLP  SI+ GP ++
Sbjct  126  EP-LDFFVLFSSIAGLLGSPGQANYAAANAFLDALAEYRRSQGLPATSINWGPWAE  180



Lambda      K        H        a         alpha
   0.320    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 747214000


Query= TCONS_00026479

Length=808
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  212     1e-64
CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        73.5    5e-16


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 212 bits (541),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 78/176 (44%), Positives = 110/176 (63%), Gaps = 9/176 (5%)

Query  358  RSIAHWLVDHGAQNLILLSRSAGDLDLAQNQNAEGALFVRELRAAGCRVKPVSCDIALAS  417
            R +A WL + GA++L+LLSRSA     AQ         + EL A G  V  V+CD++   
Sbjct  14   RELARWLAERGARHLVLLSRSAAPRPDAQA-------LIAELEARGVEVVVVACDVSDPD  66

Query  418  SLAKALRACEDEGLPPVRGVIQGAMLLRDAIFEQMTLADWKSGLAPKLNGSWNLHTEFST  477
            ++A  L   + EG PP+RGVI  A +LRDA+ E MT  DW+  LAPK+ G+WNLH     
Sbjct  67   AVAALLAEIKAEG-PPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLHEATPD  125

Query  478  RGGLDFFVMLSSVSGVIGIASQTNYAAGGSYEDALARWRQARGLPGVSIDLGPISD  533
               LDFFV+ SS++G++G   Q NYAA  ++ DALA +R+++GLP  SI+ GP ++
Sbjct  126  EP-LDFFVLFSSIAGLLGSPGQANYAAANAFLDALAEYRRSQGLPATSINWGPWAE  180


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 73.5 bits (181),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 37/138 (27%), Positives = 59/138 (43%), Gaps = 18/138 (13%)

Query  190  AERIFSSRDASFAPAVLAATEGRGVDVMLNSLPGPLLQASLSVIAPLGHLIEFGKKEIET  249
            A+ +   R   F      AT G GVDV+L+++ G   +ASL V+   G L+  G      
Sbjct  3    ADEVIDYRTTDFV----QATGGEGVDVVLDTVGGEAFEASLRVLPGGGRLVTIG----GP  54

Query  250  NSLVALECFSRGISLASLDVPTLLRRRGPDIHRILGEVTRLVDQRALKPHV---------  300
                 L   +R      +    L  R       IL E+  L+++  L+P +         
Sbjct  55   PLSAGLLLPARKRGGRGVKYLFLFVRPNLG-ADILQELADLIEEGKLRPVIDRVFPLEEA  113

Query  301  QDAFRFLQTGAHMGKVVL  318
             +A R+L++G   GK+VL
Sbjct  114  AEAHRYLESGRARGKIVL  131



Lambda      K        H        a         alpha
   0.320    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1038978528


Query= TCONS_00026480

Length=808
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  212     1e-64
CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        73.5    5e-16


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 212 bits (541),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 78/176 (44%), Positives = 110/176 (63%), Gaps = 9/176 (5%)

Query  358  RSIAHWLVDHGAQNLILLSRSAGDLDLAQNQNAEGALFVRELRAAGCRVKPVSCDIALAS  417
            R +A WL + GA++L+LLSRSA     AQ         + EL A G  V  V+CD++   
Sbjct  14   RELARWLAERGARHLVLLSRSAAPRPDAQA-------LIAELEARGVEVVVVACDVSDPD  66

Query  418  SLAKALRACEDEGLPPVRGVIQGAMLLRDAIFEQMTLADWKSGLAPKLNGSWNLHTEFST  477
            ++A  L   + EG PP+RGVI  A +LRDA+ E MT  DW+  LAPK+ G+WNLH     
Sbjct  67   AVAALLAEIKAEG-PPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLHEATPD  125

Query  478  RGGLDFFVMLSSVSGVIGIASQTNYAAGGSYEDALARWRQARGLPGVSIDLGPISD  533
               LDFFV+ SS++G++G   Q NYAA  ++ DALA +R+++GLP  SI+ GP ++
Sbjct  126  EP-LDFFVLFSSIAGLLGSPGQANYAAANAFLDALAEYRRSQGLPATSINWGPWAE  180


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 73.5 bits (181),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 37/138 (27%), Positives = 59/138 (43%), Gaps = 18/138 (13%)

Query  190  AERIFSSRDASFAPAVLAATEGRGVDVMLNSLPGPLLQASLSVIAPLGHLIEFGKKEIET  249
            A+ +   R   F      AT G GVDV+L+++ G   +ASL V+   G L+  G      
Sbjct  3    ADEVIDYRTTDFV----QATGGEGVDVVLDTVGGEAFEASLRVLPGGGRLVTIG----GP  54

Query  250  NSLVALECFSRGISLASLDVPTLLRRRGPDIHRILGEVTRLVDQRALKPHV---------  300
                 L   +R      +    L  R       IL E+  L+++  L+P +         
Sbjct  55   PLSAGLLLPARKRGGRGVKYLFLFVRPNLG-ADILQELADLIEEGKLRPVIDRVFPLEEA  113

Query  301  QDAFRFLQTGAHMGKVVL  318
             +A R+L++G   GK+VL
Sbjct  114  AEAHRYLESGRARGKIVL  131



Lambda      K        H        a         alpha
   0.320    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1038978528


Query= TCONS_00021278

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  209     3e-66


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 209 bits (535),  Expect = 3e-66, Method: Composition-based stats.
 Identities = 78/176 (44%), Positives = 110/176 (63%), Gaps = 9/176 (5%)

Query  46   RSIAHWLVDHGAQNLILLSRSAGDLDLAQNQNAEGALFVRELRAAGCRVKPVSCDIALAS  105
            R +A WL + GA++L+LLSRSA     AQ         + EL A G  V  V+CD++   
Sbjct  14   RELARWLAERGARHLVLLSRSAAPRPDAQA-------LIAELEARGVEVVVVACDVSDPD  66

Query  106  SLAKALRACEDEGLPPVRGVIQGAMLLRDAIFEQMTLADWKSGLAPKLNGSWNLHTEFST  165
            ++A  L   + EG PP+RGVI  A +LRDA+ E MT  DW+  LAPK+ G+WNLH     
Sbjct  67   AVAALLAEIKAEG-PPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLHEATPD  125

Query  166  RGGLDFFVMLSSVSGVIGIASQTNYAAGGSYEDALARWRQARGLPGVSIDLGPISD  221
               LDFFV+ SS++G++G   Q NYAA  ++ DALA +R+++GLP  SI+ GP ++
Sbjct  126  EP-LDFFVLFSSIAGLLGSPGQANYAAANAFLDALAEYRRSQGLPATSINWGPWAE  180



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00021276

Length=808
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  212     1e-64
CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        73.5    5e-16


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 212 bits (541),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 78/176 (44%), Positives = 110/176 (63%), Gaps = 9/176 (5%)

Query  358  RSIAHWLVDHGAQNLILLSRSAGDLDLAQNQNAEGALFVRELRAAGCRVKPVSCDIALAS  417
            R +A WL + GA++L+LLSRSA     AQ         + EL A G  V  V+CD++   
Sbjct  14   RELARWLAERGARHLVLLSRSAAPRPDAQA-------LIAELEARGVEVVVVACDVSDPD  66

Query  418  SLAKALRACEDEGLPPVRGVIQGAMLLRDAIFEQMTLADWKSGLAPKLNGSWNLHTEFST  477
            ++A  L   + EG PP+RGVI  A +LRDA+ E MT  DW+  LAPK+ G+WNLH     
Sbjct  67   AVAALLAEIKAEG-PPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLHEATPD  125

Query  478  RGGLDFFVMLSSVSGVIGIASQTNYAAGGSYEDALARWRQARGLPGVSIDLGPISD  533
               LDFFV+ SS++G++G   Q NYAA  ++ DALA +R+++GLP  SI+ GP ++
Sbjct  126  EP-LDFFVLFSSIAGLLGSPGQANYAAANAFLDALAEYRRSQGLPATSINWGPWAE  180


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 73.5 bits (181),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 37/138 (27%), Positives = 59/138 (43%), Gaps = 18/138 (13%)

Query  190  AERIFSSRDASFAPAVLAATEGRGVDVMLNSLPGPLLQASLSVIAPLGHLIEFGKKEIET  249
            A+ +   R   F      AT G GVDV+L+++ G   +ASL V+   G L+  G      
Sbjct  3    ADEVIDYRTTDFV----QATGGEGVDVVLDTVGGEAFEASLRVLPGGGRLVTIG----GP  54

Query  250  NSLVALECFSRGISLASLDVPTLLRRRGPDIHRILGEVTRLVDQRALKPHV---------  300
                 L   +R      +    L  R       IL E+  L+++  L+P +         
Sbjct  55   PLSAGLLLPARKRGGRGVKYLFLFVRPNLG-ADILQELADLIEEGKLRPVIDRVFPLEEA  113

Query  301  QDAFRFLQTGAHMGKVVL  318
             +A R+L++G   GK+VL
Sbjct  114  AEAHRYLESGRARGKIVL  131



Lambda      K        H        a         alpha
   0.320    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1038978528


Query= TCONS_00026481

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00021280

Length=580
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  157     2e-44
CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide o...  66.8    2e-14
CDD:425764 pfam00581, Rhodanese, Rhodanese-like domain. Rhodanese...  66.7    3e-14


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 157 bits (400),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 84/295 (28%), Positives = 132/295 (45%), Gaps = 21/295 (7%)

Query  27   RLVIIGGARGGMSAAVRARRLNENASIIVIERGSYISYTNCFAPFSLGGAIER-----DT  81
             +V+IGG   G++AA+   +L     + +IE      Y  C    +L GA E        
Sbjct  2    DVVVIGGGPAGLAAALTLAQLG--GKVTLIEDEGTCPYGGCVLSKALLGAAEAPEIASLW  59

Query  82   WIAVQTPAGLKARFNVDVRVCTEL--VSISRERHSITVRCRKTDTTYDLPYDKMILAQGA  139
                +    +  + N  + V      VSI      + +          + YD++++A GA
Sbjct  60   ADLYKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEELVDGDGETITYDRLVIATGA  119

Query  140  DPAGRPMADIEKDKVFPLQ-TPADLQAIRSFVVKNDCREVVILGGAFTGLKAVESLHSFG  198
             P   P     +  V  L  T    +A+R        R VV++GG + G++   +L   G
Sbjct  120  RPR-LPPIPGVELNVGFLVRTLDSAEALRL--KLLPKR-VVVVGGGYIGVELAAALAKLG  175

Query  199  LHVRVVEAGDRLCPEFDPDFATIIQKELVKRGVGIHLGRGECQTIAE-TEDSDRCRIEFH  257
              V ++EA DRL   FD + +  ++K L K GV + LG     ++ E   D D   +   
Sbjct  176  KEVTLIEALDRLLRAFDEEISAALEKALEKNGVEVRLGT----SVKEIIGDGDGVEVILK  231

Query  258  DGSSLSADLVVVATEPEPRVQHAKNAGLTV--RKGIVVNAFMQTSDPDIYAVGSV  310
            DG+ + ADLVVVA    P  +  + AGL +  R GIVV+ +++TS P IYA G  
Sbjct  232  DGTEIDADLVVVAIGRRPNTELLEAAGLELDERGGIVVDEYLRTSVPGIYAAGDC  286


>CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=80

 Score = 66.8 bits (164),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 30/82 (37%), Positives = 42/82 (51%), Gaps = 3/82 (4%)

Query  178  VVILGGAFTGLKAVESLHSFGLHVRVVEAGDRLCPEFDPDFATIIQKELVKRGVGIHLGR  237
            VV++GG + GL+   +L   G  V VVE  DRL P FDP+ A I+Q++L K G+   L  
Sbjct  2    VVVVGGGYIGLELAGALARLGSKVTVVERRDRLLPGFDPEIAKILQEKLEKNGIEFLLN-  60

Query  238  GECQTIAETEDSDRCRIEFHDG  259
                  A   + D   +   DG
Sbjct  61   --TTVEAIEGNGDGVVVVLTDG  80


>CDD:425764 pfam00581, Rhodanese, Rhodanese-like domain.  Rhodanese has an 
internal duplication. This Pfam represents a single copy of 
this duplicated domain. The domain is found as a single copy 
in other proteins, including phosphatases and ubiquitin C-terminal 
hydrolases.
Length=92

 Score = 66.7 bits (163),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 44/87 (51%), Gaps = 11/87 (13%)

Query  493  EWPIIDVRSAEHFAQGHLPLARNIPIDTLRS----------RLAEIGKDRPVLVYSRVGY  542
            +  +IDVR  E +A+GH+P A N+P+ +L            +L E+ KD+P++VY   G 
Sbjct  5    KVVLIDVRPPEEYAKGHIPGAVNVPLSSLSLPPLPLLELLEKLLELLKDKPIVVYCNSGN  64

Query  543  HGYLAYRNLVQSGY-RAANLDGGLKLF  568
                A   L   GY     LDGG + +
Sbjct  65   RAAAAAALLKALGYKNVYVLDGGFEAW  91



Lambda      K        H        a         alpha
   0.320    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 729280864


Query= TCONS_00021281

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  115     1e-29
CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide o...  66.8    1e-14
CDD:425764 pfam00581, Rhodanese, Rhodanese-like domain. Rhodanese...  66.4    3e-14


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 115 bits (291),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 61/181 (34%), Positives = 91/181 (50%), Gaps = 12/181 (7%)

Query  2    ILAQGADPAGRPMADIEKDKVFPLQ-TPADLQAIRSFVVKNDCREVVILGGAFTGLKAVE  60
            ++A GA P   P     +  V  L  T    +A+R        R VV++GG + G++   
Sbjct  114  VIATGARPR-LPPIPGVELNVGFLVRTLDSAEALRL--KLLPKR-VVVVGGGYIGVELAA  169

Query  61   SLHSFGLHVRVVEAGDRLCPEFDPDFATIIQKELVKRGVGIHLGRGECQTIAE-TEDSDR  119
            +L   G  V ++EA DRL   FD + +  ++K L K GV + LG     ++ E   D D 
Sbjct  170  ALAKLGKEVTLIEALDRLLRAFDEEISAALEKALEKNGVEVRLGT----SVKEIIGDGDG  225

Query  120  CRIEFHDGSSLSADLVVVATEPEPRVQHAKNAGLTV--RKGIVVNAFMQTSDPDIYAVGS  177
              +   DG+ + ADLVVVA    P  +  + AGL +  R GIVV+ +++TS P IYA G 
Sbjct  226  VEVILKDGTEIDADLVVVAIGRRPNTELLEAAGLELDERGGIVVDEYLRTSVPGIYAAGD  285

Query  178  V  178
             
Sbjct  286  C  286


>CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=80

 Score = 66.8 bits (164),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 30/82 (37%), Positives = 42/82 (51%), Gaps = 3/82 (4%)

Query  46   VVILGGAFTGLKAVESLHSFGLHVRVVEAGDRLCPEFDPDFATIIQKELVKRGVGIHLGR  105
            VV++GG + GL+   +L   G  V VVE  DRL P FDP+ A I+Q++L K G+   L  
Sbjct  2    VVVVGGGYIGLELAGALARLGSKVTVVERRDRLLPGFDPEIAKILQEKLEKNGIEFLLN-  60

Query  106  GECQTIAETEDSDRCRIEFHDG  127
                  A   + D   +   DG
Sbjct  61   --TTVEAIEGNGDGVVVVLTDG  80


>CDD:425764 pfam00581, Rhodanese, Rhodanese-like domain.  Rhodanese has an 
internal duplication. This Pfam represents a single copy of 
this duplicated domain. The domain is found as a single copy 
in other proteins, including phosphatases and ubiquitin C-terminal 
hydrolases.
Length=92

 Score = 66.4 bits (162),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 44/87 (51%), Gaps = 11/87 (13%)

Query  361  EWPIIDVRSAEHFAQGHLPLARNIPIDTLRS----------RLAEIGKDRPVLVYSRVGY  410
            +  +IDVR  E +A+GH+P A N+P+ +L            +L E+ KD+P++VY   G 
Sbjct  5    KVVLIDVRPPEEYAKGHIPGAVNVPLSSLSLPPLPLLELLEKLLELLKDKPIVVYCNSGN  64

Query  411  HGYLAYRNLVQSGY-RAANLDGGLKLF  436
                A   L   GY     LDGG + +
Sbjct  65   RAAAAAALLKALGYKNVYVLDGGFEAW  91



Lambda      K        H        a         alpha
   0.320    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00021282

Length=224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428767 pfam06100, MCRA, MCRA family. The MCRA (myosin-cross-r...  319     7e-109


>CDD:428767 pfam06100, MCRA, MCRA family.  The MCRA (myosin-cross-reactive 
antigen) family of proteins were thought to have structural 
features in common with the beta chain of the class II antigens, 
as well as myosin, and may play an important role in 
the pathogenesis. More recent work shows that these proteins 
act as hydratase enzymes that convert linoleic acid and oleic 
acid to their respective 10-hydroxy derivatives. It has been 
suggested that MCRA proteins catalyze the first step in 
conjugated linoleic acid production. Proteins in this family 
act in an FAD dependent manner. The structure of a fatty acid 
double-bond hydratase from Lactobacillus acidophilus has 
been recently solved showing four structural domains.
Length=492

 Score = 319 bits (821),  Expect = 7e-109, Method: Composition-based stats.
 Identities = 96/198 (48%), Positives = 128/198 (65%), Gaps = 3/198 (2%)

Query  5    WKLWQKLSDKSPKFGNPSNFLSRALESGVETFTTTLWGPQFMNLYEKLTHDQPRTDALLS  64
            W LW+KL+ KSP FGNP  F +   ES  E+FT T   P+F +  EKLT + P T  L++
Sbjct  295  WSLWKKLAAKSPDFGNPEKFCTDIPESKWESFTVTTKDPKFFDYIEKLTGNDPGTGGLVT  354

Query  65   LTESKWSITLSIPHQPILPGQPPDAHIVCGYALSPWNEGDFVKKPMFACSGKEIFTEVLS  124
              +S W +++++P QP  P QP D  +  GY L P  EGD+VKKPM  C+G+EI TE+L 
Sbjct  355  FKDSNWLLSITVPRQPHFPDQPEDVTVFWGYGLFPDKEGDYVKKPMLECTGEEILTELLY  414

Query  125  HLGFPV---QSILDAATTIPCGLSLGTAPFLTRGNRDRPHVIPPYTTNIACVGQFAELPE  181
            HLGFP    + IL  + TIPC +   TA F+ R   DRP V+P  +TN+A +GQF E+P 
Sbjct  415  HLGFPEDQIEEILANSNTIPCMMPYITAQFMPRAKGDRPEVVPEGSTNLAFIGQFVEIPR  474

Query  182  DTTLSMEYSVRSAQMAVY  199
            DT  ++EYSVR+AQ AVY
Sbjct  475  DTVFTVEYSVRTAQEAVY  492



Lambda      K        H        a         alpha
   0.319    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00026482

Length=224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428767 pfam06100, MCRA, MCRA family. The MCRA (myosin-cross-r...  319     7e-109


>CDD:428767 pfam06100, MCRA, MCRA family.  The MCRA (myosin-cross-reactive 
antigen) family of proteins were thought to have structural 
features in common with the beta chain of the class II antigens, 
as well as myosin, and may play an important role in 
the pathogenesis. More recent work shows that these proteins 
act as hydratase enzymes that convert linoleic acid and oleic 
acid to their respective 10-hydroxy derivatives. It has been 
suggested that MCRA proteins catalyze the first step in 
conjugated linoleic acid production. Proteins in this family 
act in an FAD dependent manner. The structure of a fatty acid 
double-bond hydratase from Lactobacillus acidophilus has 
been recently solved showing four structural domains.
Length=492

 Score = 319 bits (821),  Expect = 7e-109, Method: Composition-based stats.
 Identities = 96/198 (48%), Positives = 128/198 (65%), Gaps = 3/198 (2%)

Query  5    WKLWQKLSDKSPKFGNPSNFLSRALESGVETFTTTLWGPQFMNLYEKLTHDQPRTDALLS  64
            W LW+KL+ KSP FGNP  F +   ES  E+FT T   P+F +  EKLT + P T  L++
Sbjct  295  WSLWKKLAAKSPDFGNPEKFCTDIPESKWESFTVTTKDPKFFDYIEKLTGNDPGTGGLVT  354

Query  65   LTESKWSITLSIPHQPILPGQPPDAHIVCGYALSPWNEGDFVKKPMFACSGKEIFTEVLS  124
              +S W +++++P QP  P QP D  +  GY L P  EGD+VKKPM  C+G+EI TE+L 
Sbjct  355  FKDSNWLLSITVPRQPHFPDQPEDVTVFWGYGLFPDKEGDYVKKPMLECTGEEILTELLY  414

Query  125  HLGFPV---QSILDAATTIPCGLSLGTAPFLTRGNRDRPHVIPPYTTNIACVGQFAELPE  181
            HLGFP    + IL  + TIPC +   TA F+ R   DRP V+P  +TN+A +GQF E+P 
Sbjct  415  HLGFPEDQIEEILANSNTIPCMMPYITAQFMPRAKGDRPEVVPEGSTNLAFIGQFVEIPR  474

Query  182  DTTLSMEYSVRSAQMAVY  199
            DT  ++EYSVR+AQ AVY
Sbjct  475  DTVFTVEYSVRTAQEAVY  492



Lambda      K        H        a         alpha
   0.319    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00021284

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428767 pfam06100, MCRA, MCRA family. The MCRA (myosin-cross-r...  713     0.0  


>CDD:428767 pfam06100, MCRA, MCRA family.  The MCRA (myosin-cross-reactive 
antigen) family of proteins were thought to have structural 
features in common with the beta chain of the class II antigens, 
as well as myosin, and may play an important role in 
the pathogenesis. More recent work shows that these proteins 
act as hydratase enzymes that convert linoleic acid and oleic 
acid to their respective 10-hydroxy derivatives. It has been 
suggested that MCRA proteins catalyze the first step in 
conjugated linoleic acid production. Proteins in this family 
act in an FAD dependent manner. The structure of a fatty acid 
double-bond hydratase from Lactobacillus acidophilus has 
been recently solved showing four structural domains.
Length=492

 Score = 713 bits (1843),  Expect = 0.0, Method: Composition-based stats.
 Identities = 233/501 (47%), Positives = 310/501 (62%), Gaps = 13/501 (3%)

Query  19   QAWLVGSGMACLAAAVHLIREGNLPGKNVHILDLHLGFGGEMGTSGDAQNGYFVPFECHP  78
            +A++VGSG+A LAAAV LIR+  +PG+N+HIL+     GG +  +GD + GY +      
Sbjct  2    KAYIVGSGIASLAAAVFLIRDAQMPGENIHILEELDVAGGSLDGAGDPEKGYVIRGGREM  61

Query  79   YFHGDCIKDLLSIVPSPGEPGKSMMDDIYSLEKNERRPPQDSGMTRAIKLGKLGPEVVHF  138
             FH +C+ DLLS +PS  +PG S++D+IY   K   R P  S  TR I     G E+V  
Sbjct  62   EFHYECLWDLLSSIPSLEDPGASVLDEIYWFNK---RDPNYS-KTRLID--NRGLEIVDD  115

Query  139  RGIQVGLKHRLELMKFILESETSLGAKSINQIFEPSFFETGFWTRWSTAFAFQPWHSAVE  198
              + +  K RLEL+K  L  E  LG K I  +F PSFFET FW  WST FAFQPWHSAVE
Sbjct  116  SKLGLSKKDRLELIKLFLTPEEELGDKRIEDVFSPSFFETNFWLMWSTMFAFQPWHSAVE  175

Query  199  FRRHLRKYLEDIQALNDVKGAYRTKYNLFDSITLPLADFLKGEGVDFRFNVDVTDLLLYP  258
            FRR+L +++ +I  LND+ G  RTKYN ++SI LPL  +LK +GVDFRFN  VTD+   P
Sbjct  176  FRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLVKYLKDQGVDFRFNTKVTDIDFDP  235

Query  259  ESDPTTVSEIKLIKEGDECLITLDPEDICIVDPGYSRSGADFGTDTAPPPFLTSNWEDLM  318
              D  TV+ I L ++G+E  I L P+D+  V  G    G+ +G +  PPP  T       
Sbjct  236  TGDKKTVTGIHLTQDGEEETIDLGPDDLVFVTNGSMTEGSSYGDNDTPPPLNTDEL----  291

Query  319  MKEWKLWQKLSDKSPKFGNPSNFLSRALESGVETFTTTLWGPQFMNLYEKLTHDQPRTDA  378
               W LW+KL+ KSP FGNP  F +   ES  E+FT T   P+F +  EKLT + P T  
Sbjct  292  GGSWSLWKKLAAKSPDFGNPEKFCTDIPESKWESFTVTTKDPKFFDYIEKLTGNDPGTGG  351

Query  379  LLSLTESKWSITLSIPHQPILPGQPPDAHIVCGYALSPWNEGDFVKKPMFACSGKEIFTE  438
            L++  +S W +++++P QP  P QP D  +  GY L P  EGD+VKKPM  C+G+EI TE
Sbjct  352  LVTFKDSNWLLSITVPRQPHFPDQPEDVTVFWGYGLFPDKEGDYVKKPMLECTGEEILTE  411

Query  439  VLSHLGFPV---QSILDAATTIPCGLSLGTAPFLTRGNRDRPHVIPPYTTNIACVGQFAE  495
            +L HLGFP    + IL  + TIPC +   TA F+ R   DRP V+P  +TN+A +GQF E
Sbjct  412  LLYHLGFPEDQIEEILANSNTIPCMMPYITAQFMPRAKGDRPEVVPEGSTNLAFIGQFVE  471

Query  496  LPEDTTLSMEYSVRSAQMAVY  516
            +P DT  ++EYSVR+AQ AVY
Sbjct  472  IPRDTVFTVEYSVRTAQEAVY  492



Lambda      K        H        a         alpha
   0.320    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00021283

Length=224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428767 pfam06100, MCRA, MCRA family. The MCRA (myosin-cross-r...  319     7e-109


>CDD:428767 pfam06100, MCRA, MCRA family.  The MCRA (myosin-cross-reactive 
antigen) family of proteins were thought to have structural 
features in common with the beta chain of the class II antigens, 
as well as myosin, and may play an important role in 
the pathogenesis. More recent work shows that these proteins 
act as hydratase enzymes that convert linoleic acid and oleic 
acid to their respective 10-hydroxy derivatives. It has been 
suggested that MCRA proteins catalyze the first step in 
conjugated linoleic acid production. Proteins in this family 
act in an FAD dependent manner. The structure of a fatty acid 
double-bond hydratase from Lactobacillus acidophilus has 
been recently solved showing four structural domains.
Length=492

 Score = 319 bits (821),  Expect = 7e-109, Method: Composition-based stats.
 Identities = 96/198 (48%), Positives = 128/198 (65%), Gaps = 3/198 (2%)

Query  5    WKLWQKLSDKSPKFGNPSNFLSRALESGVETFTTTLWGPQFMNLYEKLTHDQPRTDALLS  64
            W LW+KL+ KSP FGNP  F +   ES  E+FT T   P+F +  EKLT + P T  L++
Sbjct  295  WSLWKKLAAKSPDFGNPEKFCTDIPESKWESFTVTTKDPKFFDYIEKLTGNDPGTGGLVT  354

Query  65   LTESKWSITLSIPHQPILPGQPPDAHIVCGYALSPWNEGDFVKKPMFACSGKEIFTEVLS  124
              +S W +++++P QP  P QP D  +  GY L P  EGD+VKKPM  C+G+EI TE+L 
Sbjct  355  FKDSNWLLSITVPRQPHFPDQPEDVTVFWGYGLFPDKEGDYVKKPMLECTGEEILTELLY  414

Query  125  HLGFPV---QSILDAATTIPCGLSLGTAPFLTRGNRDRPHVIPPYTTNIACVGQFAELPE  181
            HLGFP    + IL  + TIPC +   TA F+ R   DRP V+P  +TN+A +GQF E+P 
Sbjct  415  HLGFPEDQIEEILANSNTIPCMMPYITAQFMPRAKGDRPEVVPEGSTNLAFIGQFVEIPR  474

Query  182  DTTLSMEYSVRSAQMAVY  199
            DT  ++EYSVR+AQ AVY
Sbjct  475  DTVFTVEYSVRTAQEAVY  492



Lambda      K        H        a         alpha
   0.319    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00026483

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428767 pfam06100, MCRA, MCRA family. The MCRA (myosin-cross-r...  713     0.0  


>CDD:428767 pfam06100, MCRA, MCRA family.  The MCRA (myosin-cross-reactive 
antigen) family of proteins were thought to have structural 
features in common with the beta chain of the class II antigens, 
as well as myosin, and may play an important role in 
the pathogenesis. More recent work shows that these proteins 
act as hydratase enzymes that convert linoleic acid and oleic 
acid to their respective 10-hydroxy derivatives. It has been 
suggested that MCRA proteins catalyze the first step in 
conjugated linoleic acid production. Proteins in this family 
act in an FAD dependent manner. The structure of a fatty acid 
double-bond hydratase from Lactobacillus acidophilus has 
been recently solved showing four structural domains.
Length=492

 Score = 713 bits (1843),  Expect = 0.0, Method: Composition-based stats.
 Identities = 233/501 (47%), Positives = 310/501 (62%), Gaps = 13/501 (3%)

Query  19   QAWLVGSGMACLAAAVHLIREGNLPGKNVHILDLHLGFGGEMGTSGDAQNGYFVPFECHP  78
            +A++VGSG+A LAAAV LIR+  +PG+N+HIL+     GG +  +GD + GY +      
Sbjct  2    KAYIVGSGIASLAAAVFLIRDAQMPGENIHILEELDVAGGSLDGAGDPEKGYVIRGGREM  61

Query  79   YFHGDCIKDLLSIVPSPGEPGKSMMDDIYSLEKNERRPPQDSGMTRAIKLGKLGPEVVHF  138
             FH +C+ DLLS +PS  +PG S++D+IY   K   R P  S  TR I     G E+V  
Sbjct  62   EFHYECLWDLLSSIPSLEDPGASVLDEIYWFNK---RDPNYS-KTRLID--NRGLEIVDD  115

Query  139  RGIQVGLKHRLELMKFILESETSLGAKSINQIFEPSFFETGFWTRWSTAFAFQPWHSAVE  198
              + +  K RLEL+K  L  E  LG K I  +F PSFFET FW  WST FAFQPWHSAVE
Sbjct  116  SKLGLSKKDRLELIKLFLTPEEELGDKRIEDVFSPSFFETNFWLMWSTMFAFQPWHSAVE  175

Query  199  FRRHLRKYLEDIQALNDVKGAYRTKYNLFDSITLPLADFLKGEGVDFRFNVDVTDLLLYP  258
            FRR+L +++ +I  LND+ G  RTKYN ++SI LPL  +LK +GVDFRFN  VTD+   P
Sbjct  176  FRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLVKYLKDQGVDFRFNTKVTDIDFDP  235

Query  259  ESDPTTVSEIKLIKEGDECLITLDPEDICIVDPGYSRSGADFGTDTAPPPFLTSNWEDLM  318
              D  TV+ I L ++G+E  I L P+D+  V  G    G+ +G +  PPP  T       
Sbjct  236  TGDKKTVTGIHLTQDGEEETIDLGPDDLVFVTNGSMTEGSSYGDNDTPPPLNTDEL----  291

Query  319  MKEWKLWQKLSDKSPKFGNPSNFLSRALESGVETFTTTLWGPQFMNLYEKLTHDQPRTDA  378
               W LW+KL+ KSP FGNP  F +   ES  E+FT T   P+F +  EKLT + P T  
Sbjct  292  GGSWSLWKKLAAKSPDFGNPEKFCTDIPESKWESFTVTTKDPKFFDYIEKLTGNDPGTGG  351

Query  379  LLSLTESKWSITLSIPHQPILPGQPPDAHIVCGYALSPWNEGDFVKKPMFACSGKEIFTE  438
            L++  +S W +++++P QP  P QP D  +  GY L P  EGD+VKKPM  C+G+EI TE
Sbjct  352  LVTFKDSNWLLSITVPRQPHFPDQPEDVTVFWGYGLFPDKEGDYVKKPMLECTGEEILTE  411

Query  439  VLSHLGFPV---QSILDAATTIPCGLSLGTAPFLTRGNRDRPHVIPPYTTNIACVGQFAE  495
            +L HLGFP    + IL  + TIPC +   TA F+ R   DRP V+P  +TN+A +GQF E
Sbjct  412  LLYHLGFPEDQIEEILANSNTIPCMMPYITAQFMPRAKGDRPEVVPEGSTNLAFIGQFVE  471

Query  496  LPEDTTLSMEYSVRSAQMAVY  516
            +P DT  ++EYSVR+AQ AVY
Sbjct  472  IPRDTVFTVEYSVRTAQEAVY  492



Lambda      K        H        a         alpha
   0.320    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00021286

Length=224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428767 pfam06100, MCRA, MCRA family. The MCRA (myosin-cross-r...  319     7e-109


>CDD:428767 pfam06100, MCRA, MCRA family.  The MCRA (myosin-cross-reactive 
antigen) family of proteins were thought to have structural 
features in common with the beta chain of the class II antigens, 
as well as myosin, and may play an important role in 
the pathogenesis. More recent work shows that these proteins 
act as hydratase enzymes that convert linoleic acid and oleic 
acid to their respective 10-hydroxy derivatives. It has been 
suggested that MCRA proteins catalyze the first step in 
conjugated linoleic acid production. Proteins in this family 
act in an FAD dependent manner. The structure of a fatty acid 
double-bond hydratase from Lactobacillus acidophilus has 
been recently solved showing four structural domains.
Length=492

 Score = 319 bits (821),  Expect = 7e-109, Method: Composition-based stats.
 Identities = 96/198 (48%), Positives = 128/198 (65%), Gaps = 3/198 (2%)

Query  5    WKLWQKLSDKSPKFGNPSNFLSRALESGVETFTTTLWGPQFMNLYEKLTHDQPRTDALLS  64
            W LW+KL+ KSP FGNP  F +   ES  E+FT T   P+F +  EKLT + P T  L++
Sbjct  295  WSLWKKLAAKSPDFGNPEKFCTDIPESKWESFTVTTKDPKFFDYIEKLTGNDPGTGGLVT  354

Query  65   LTESKWSITLSIPHQPILPGQPPDAHIVCGYALSPWNEGDFVKKPMFACSGKEIFTEVLS  124
              +S W +++++P QP  P QP D  +  GY L P  EGD+VKKPM  C+G+EI TE+L 
Sbjct  355  FKDSNWLLSITVPRQPHFPDQPEDVTVFWGYGLFPDKEGDYVKKPMLECTGEEILTELLY  414

Query  125  HLGFPV---QSILDAATTIPCGLSLGTAPFLTRGNRDRPHVIPPYTTNIACVGQFAELPE  181
            HLGFP    + IL  + TIPC +   TA F+ R   DRP V+P  +TN+A +GQF E+P 
Sbjct  415  HLGFPEDQIEEILANSNTIPCMMPYITAQFMPRAKGDRPEVVPEGSTNLAFIGQFVEIPR  474

Query  182  DTTLSMEYSVRSAQMAVY  199
            DT  ++EYSVR+AQ AVY
Sbjct  475  DTVFTVEYSVRTAQEAVY  492



Lambda      K        H        a         alpha
   0.319    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00026485

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428767 pfam06100, MCRA, MCRA family. The MCRA (myosin-cross-r...  713     0.0  


>CDD:428767 pfam06100, MCRA, MCRA family.  The MCRA (myosin-cross-reactive 
antigen) family of proteins were thought to have structural 
features in common with the beta chain of the class II antigens, 
as well as myosin, and may play an important role in 
the pathogenesis. More recent work shows that these proteins 
act as hydratase enzymes that convert linoleic acid and oleic 
acid to their respective 10-hydroxy derivatives. It has been 
suggested that MCRA proteins catalyze the first step in 
conjugated linoleic acid production. Proteins in this family 
act in an FAD dependent manner. The structure of a fatty acid 
double-bond hydratase from Lactobacillus acidophilus has 
been recently solved showing four structural domains.
Length=492

 Score = 713 bits (1843),  Expect = 0.0, Method: Composition-based stats.
 Identities = 233/501 (47%), Positives = 310/501 (62%), Gaps = 13/501 (3%)

Query  19   QAWLVGSGMACLAAAVHLIREGNLPGKNVHILDLHLGFGGEMGTSGDAQNGYFVPFECHP  78
            +A++VGSG+A LAAAV LIR+  +PG+N+HIL+     GG +  +GD + GY +      
Sbjct  2    KAYIVGSGIASLAAAVFLIRDAQMPGENIHILEELDVAGGSLDGAGDPEKGYVIRGGREM  61

Query  79   YFHGDCIKDLLSIVPSPGEPGKSMMDDIYSLEKNERRPPQDSGMTRAIKLGKLGPEVVHF  138
             FH +C+ DLLS +PS  +PG S++D+IY   K   R P  S  TR I     G E+V  
Sbjct  62   EFHYECLWDLLSSIPSLEDPGASVLDEIYWFNK---RDPNYS-KTRLID--NRGLEIVDD  115

Query  139  RGIQVGLKHRLELMKFILESETSLGAKSINQIFEPSFFETGFWTRWSTAFAFQPWHSAVE  198
              + +  K RLEL+K  L  E  LG K I  +F PSFFET FW  WST FAFQPWHSAVE
Sbjct  116  SKLGLSKKDRLELIKLFLTPEEELGDKRIEDVFSPSFFETNFWLMWSTMFAFQPWHSAVE  175

Query  199  FRRHLRKYLEDIQALNDVKGAYRTKYNLFDSITLPLADFLKGEGVDFRFNVDVTDLLLYP  258
            FRR+L +++ +I  LND+ G  RTKYN ++SI LPL  +LK +GVDFRFN  VTD+   P
Sbjct  176  FRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLVKYLKDQGVDFRFNTKVTDIDFDP  235

Query  259  ESDPTTVSEIKLIKEGDECLITLDPEDICIVDPGYSRSGADFGTDTAPPPFLTSNWEDLM  318
              D  TV+ I L ++G+E  I L P+D+  V  G    G+ +G +  PPP  T       
Sbjct  236  TGDKKTVTGIHLTQDGEEETIDLGPDDLVFVTNGSMTEGSSYGDNDTPPPLNTDEL----  291

Query  319  MKEWKLWQKLSDKSPKFGNPSNFLSRALESGVETFTTTLWGPQFMNLYEKLTHDQPRTDA  378
               W LW+KL+ KSP FGNP  F +   ES  E+FT T   P+F +  EKLT + P T  
Sbjct  292  GGSWSLWKKLAAKSPDFGNPEKFCTDIPESKWESFTVTTKDPKFFDYIEKLTGNDPGTGG  351

Query  379  LLSLTESKWSITLSIPHQPILPGQPPDAHIVCGYALSPWNEGDFVKKPMFACSGKEIFTE  438
            L++  +S W +++++P QP  P QP D  +  GY L P  EGD+VKKPM  C+G+EI TE
Sbjct  352  LVTFKDSNWLLSITVPRQPHFPDQPEDVTVFWGYGLFPDKEGDYVKKPMLECTGEEILTE  411

Query  439  VLSHLGFPV---QSILDAATTIPCGLSLGTAPFLTRGNRDRPHVIPPYTTNIACVGQFAE  495
            +L HLGFP    + IL  + TIPC +   TA F+ R   DRP V+P  +TN+A +GQF E
Sbjct  412  LLYHLGFPEDQIEEILANSNTIPCMMPYITAQFMPRAKGDRPEVVPEGSTNLAFIGQFVE  471

Query  496  LPEDTTLSMEYSVRSAQMAVY  516
            +P DT  ++EYSVR+AQ AVY
Sbjct  472  IPRDTVFTVEYSVRTAQEAVY  492



Lambda      K        H        a         alpha
   0.320    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00026484

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428767 pfam06100, MCRA, MCRA family. The MCRA (myosin-cross-r...  713     0.0  


>CDD:428767 pfam06100, MCRA, MCRA family.  The MCRA (myosin-cross-reactive 
antigen) family of proteins were thought to have structural 
features in common with the beta chain of the class II antigens, 
as well as myosin, and may play an important role in 
the pathogenesis. More recent work shows that these proteins 
act as hydratase enzymes that convert linoleic acid and oleic 
acid to their respective 10-hydroxy derivatives. It has been 
suggested that MCRA proteins catalyze the first step in 
conjugated linoleic acid production. Proteins in this family 
act in an FAD dependent manner. The structure of a fatty acid 
double-bond hydratase from Lactobacillus acidophilus has 
been recently solved showing four structural domains.
Length=492

 Score = 713 bits (1843),  Expect = 0.0, Method: Composition-based stats.
 Identities = 233/501 (47%), Positives = 310/501 (62%), Gaps = 13/501 (3%)

Query  19   QAWLVGSGMACLAAAVHLIREGNLPGKNVHILDLHLGFGGEMGTSGDAQNGYFVPFECHP  78
            +A++VGSG+A LAAAV LIR+  +PG+N+HIL+     GG +  +GD + GY +      
Sbjct  2    KAYIVGSGIASLAAAVFLIRDAQMPGENIHILEELDVAGGSLDGAGDPEKGYVIRGGREM  61

Query  79   YFHGDCIKDLLSIVPSPGEPGKSMMDDIYSLEKNERRPPQDSGMTRAIKLGKLGPEVVHF  138
             FH +C+ DLLS +PS  +PG S++D+IY   K   R P  S  TR I     G E+V  
Sbjct  62   EFHYECLWDLLSSIPSLEDPGASVLDEIYWFNK---RDPNYS-KTRLID--NRGLEIVDD  115

Query  139  RGIQVGLKHRLELMKFILESETSLGAKSINQIFEPSFFETGFWTRWSTAFAFQPWHSAVE  198
              + +  K RLEL+K  L  E  LG K I  +F PSFFET FW  WST FAFQPWHSAVE
Sbjct  116  SKLGLSKKDRLELIKLFLTPEEELGDKRIEDVFSPSFFETNFWLMWSTMFAFQPWHSAVE  175

Query  199  FRRHLRKYLEDIQALNDVKGAYRTKYNLFDSITLPLADFLKGEGVDFRFNVDVTDLLLYP  258
            FRR+L +++ +I  LND+ G  RTKYN ++SI LPL  +LK +GVDFRFN  VTD+   P
Sbjct  176  FRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLVKYLKDQGVDFRFNTKVTDIDFDP  235

Query  259  ESDPTTVSEIKLIKEGDECLITLDPEDICIVDPGYSRSGADFGTDTAPPPFLTSNWEDLM  318
              D  TV+ I L ++G+E  I L P+D+  V  G    G+ +G +  PPP  T       
Sbjct  236  TGDKKTVTGIHLTQDGEEETIDLGPDDLVFVTNGSMTEGSSYGDNDTPPPLNTDEL----  291

Query  319  MKEWKLWQKLSDKSPKFGNPSNFLSRALESGVETFTTTLWGPQFMNLYEKLTHDQPRTDA  378
               W LW+KL+ KSP FGNP  F +   ES  E+FT T   P+F +  EKLT + P T  
Sbjct  292  GGSWSLWKKLAAKSPDFGNPEKFCTDIPESKWESFTVTTKDPKFFDYIEKLTGNDPGTGG  351

Query  379  LLSLTESKWSITLSIPHQPILPGQPPDAHIVCGYALSPWNEGDFVKKPMFACSGKEIFTE  438
            L++  +S W +++++P QP  P QP D  +  GY L P  EGD+VKKPM  C+G+EI TE
Sbjct  352  LVTFKDSNWLLSITVPRQPHFPDQPEDVTVFWGYGLFPDKEGDYVKKPMLECTGEEILTE  411

Query  439  VLSHLGFPV---QSILDAATTIPCGLSLGTAPFLTRGNRDRPHVIPPYTTNIACVGQFAE  495
            +L HLGFP    + IL  + TIPC +   TA F+ R   DRP V+P  +TN+A +GQF E
Sbjct  412  LLYHLGFPEDQIEEILANSNTIPCMMPYITAQFMPRAKGDRPEVVPEGSTNLAFIGQFVE  471

Query  496  LPEDTTLSMEYSVRSAQMAVY  516
            +P DT  ++EYSVR+AQ AVY
Sbjct  472  IPRDTVFTVEYSVRTAQEAVY  492



Lambda      K        H        a         alpha
   0.320    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00021285

Length=224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428767 pfam06100, MCRA, MCRA family. The MCRA (myosin-cross-r...  319     7e-109


>CDD:428767 pfam06100, MCRA, MCRA family.  The MCRA (myosin-cross-reactive 
antigen) family of proteins were thought to have structural 
features in common with the beta chain of the class II antigens, 
as well as myosin, and may play an important role in 
the pathogenesis. More recent work shows that these proteins 
act as hydratase enzymes that convert linoleic acid and oleic 
acid to their respective 10-hydroxy derivatives. It has been 
suggested that MCRA proteins catalyze the first step in 
conjugated linoleic acid production. Proteins in this family 
act in an FAD dependent manner. The structure of a fatty acid 
double-bond hydratase from Lactobacillus acidophilus has 
been recently solved showing four structural domains.
Length=492

 Score = 319 bits (821),  Expect = 7e-109, Method: Composition-based stats.
 Identities = 96/198 (48%), Positives = 128/198 (65%), Gaps = 3/198 (2%)

Query  5    WKLWQKLSDKSPKFGNPSNFLSRALESGVETFTTTLWGPQFMNLYEKLTHDQPRTDALLS  64
            W LW+KL+ KSP FGNP  F +   ES  E+FT T   P+F +  EKLT + P T  L++
Sbjct  295  WSLWKKLAAKSPDFGNPEKFCTDIPESKWESFTVTTKDPKFFDYIEKLTGNDPGTGGLVT  354

Query  65   LTESKWSITLSIPHQPILPGQPPDAHIVCGYALSPWNEGDFVKKPMFACSGKEIFTEVLS  124
              +S W +++++P QP  P QP D  +  GY L P  EGD+VKKPM  C+G+EI TE+L 
Sbjct  355  FKDSNWLLSITVPRQPHFPDQPEDVTVFWGYGLFPDKEGDYVKKPMLECTGEEILTELLY  414

Query  125  HLGFPV---QSILDAATTIPCGLSLGTAPFLTRGNRDRPHVIPPYTTNIACVGQFAELPE  181
            HLGFP    + IL  + TIPC +   TA F+ R   DRP V+P  +TN+A +GQF E+P 
Sbjct  415  HLGFPEDQIEEILANSNTIPCMMPYITAQFMPRAKGDRPEVVPEGSTNLAFIGQFVEIPR  474

Query  182  DTTLSMEYSVRSAQMAVY  199
            DT  ++EYSVR+AQ AVY
Sbjct  475  DTVFTVEYSVRTAQEAVY  492



Lambda      K        H        a         alpha
   0.319    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0754    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00021289

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  134     8e-39
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  93.0    4e-23


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 134 bits (339),  Expect = 8e-39, Method: Composition-based stats.
 Identities = 69/214 (32%), Positives = 97/214 (45%), Gaps = 16/214 (7%)

Query  71   LLNFYGSGFAIPLHGADDGFCRFIATTTGYIVLDVEYRLAPEHPFPAAVHDVEDAVKYVL  130
            L+ F+G GF +      D  CR +A   G +V+ V+YRLAPEHPFPAA  D   A++++ 
Sbjct  1    LVYFHGGGFVLGSADTHDRLCRRLAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLA  60

Query  131  DRPEEY--KTSQVSVSGFSSGGTLALV-----GPTLFPPGTFQSVVAFYPATDLARD-PS  182
            ++  E     S+++V+G S+GG LA            P    Q  V  YP TDL  + PS
Sbjct  61   EQAAELGADPSRIAVAGDSAGGNLAAAVALRARDEGLPKPAGQ--VLIYPGTDLRTESPS  118

Query  183  LRTAPAPNAKPRSAFWTRIFREAYIGTMDPRDPRISPAYA-DASMYPTNMLVITAELDSS  241
                   +    +      F   Y+   D  DP  SP +A D S  P   LV+ AE D  
Sbjct  119  YLAREFADGPLLTRAAMDWFWRLYLPGADRDDPLASPLFASDLSGLPP-ALVVVAEFDPL  177

Query  242  ALEAEDLAKKAEMEGTASGRNVVIRRMKNCGHAF  275
              E E  A++      A+G  V +       H F
Sbjct  178  RDEGEAYAERLR----AAGVPVELIEYPGMPHGF  207


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 93.0 bits (232),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 69/165 (42%), Gaps = 33/165 (20%)

Query  54   LYKPSSEYARSSGPRPVLLNFYGSGFAIPLHGADDGFCRFIATTT------GYIVLDVEY  107
            +Y P +      GP PV++  +G G+     G  +    F+  T       GY V  + Y
Sbjct  3    IYLPKNA----KGPYPVVIWIHGGGW---NSGDKEADMGFMTNTVKALLKAGYAVASINY  55

Query  108  RLAPEHPFPAAVHDVEDAVKYVLDRPEEYK--TSQVSVSGFSSGGTLALVGPTL------  159
            RL+ +  FPA + DV+ A++++     +Y   T+++++ GFS+GG LAL+          
Sbjct  56   RLSTDAKFPAQIQDVKAAIRFLRANAAKYGIDTNKIALMGFSAGGHLALLAGLSNNNKEF  115

Query  160  ------------FPPGTFQSVVAFYPATDLARDPSLRTAPAPNAK  192
                               +VV FY  TDL    S  T     + 
Sbjct  116  EGNVGDYTPESSKESFKVNAVVDFYGPTDLLDMDSCGTHNDAKSP  160



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00021287

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  134     8e-39
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  93.0    4e-23


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 134 bits (339),  Expect = 8e-39, Method: Composition-based stats.
 Identities = 69/214 (32%), Positives = 97/214 (45%), Gaps = 16/214 (7%)

Query  71   LLNFYGSGFAIPLHGADDGFCRFIATTTGYIVLDVEYRLAPEHPFPAAVHDVEDAVKYVL  130
            L+ F+G GF +      D  CR +A   G +V+ V+YRLAPEHPFPAA  D   A++++ 
Sbjct  1    LVYFHGGGFVLGSADTHDRLCRRLAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLA  60

Query  131  DRPEEY--KTSQVSVSGFSSGGTLALV-----GPTLFPPGTFQSVVAFYPATDLARD-PS  182
            ++  E     S+++V+G S+GG LA            P    Q  V  YP TDL  + PS
Sbjct  61   EQAAELGADPSRIAVAGDSAGGNLAAAVALRARDEGLPKPAGQ--VLIYPGTDLRTESPS  118

Query  183  LRTAPAPNAKPRSAFWTRIFREAYIGTMDPRDPRISPAYA-DASMYPTNMLVITAELDSS  241
                   +    +      F   Y+   D  DP  SP +A D S  P   LV+ AE D  
Sbjct  119  YLAREFADGPLLTRAAMDWFWRLYLPGADRDDPLASPLFASDLSGLPP-ALVVVAEFDPL  177

Query  242  ALEAEDLAKKAEMEGTASGRNVVIRRMKNCGHAF  275
              E E  A++      A+G  V +       H F
Sbjct  178  RDEGEAYAERLR----AAGVPVELIEYPGMPHGF  207


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 93.0 bits (232),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 69/165 (42%), Gaps = 33/165 (20%)

Query  54   LYKPSSEYARSSGPRPVLLNFYGSGFAIPLHGADDGFCRFIATTT------GYIVLDVEY  107
            +Y P +      GP PV++  +G G+     G  +    F+  T       GY V  + Y
Sbjct  3    IYLPKNA----KGPYPVVIWIHGGGW---NSGDKEADMGFMTNTVKALLKAGYAVASINY  55

Query  108  RLAPEHPFPAAVHDVEDAVKYVLDRPEEYK--TSQVSVSGFSSGGTLALVGPTL------  159
            RL+ +  FPA + DV+ A++++     +Y   T+++++ GFS+GG LAL+          
Sbjct  56   RLSTDAKFPAQIQDVKAAIRFLRANAAKYGIDTNKIALMGFSAGGHLALLAGLSNNNKEF  115

Query  160  ------------FPPGTFQSVVAFYPATDLARDPSLRTAPAPNAK  192
                               +VV FY  TDL    S  T     + 
Sbjct  116  EGNVGDYTPESSKESFKVNAVVDFYGPTDLLDMDSCGTHNDAKSP  160



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00021291

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  134     8e-39
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  93.0    4e-23


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 134 bits (339),  Expect = 8e-39, Method: Composition-based stats.
 Identities = 69/214 (32%), Positives = 97/214 (45%), Gaps = 16/214 (7%)

Query  71   LLNFYGSGFAIPLHGADDGFCRFIATTTGYIVLDVEYRLAPEHPFPAAVHDVEDAVKYVL  130
            L+ F+G GF +      D  CR +A   G +V+ V+YRLAPEHPFPAA  D   A++++ 
Sbjct  1    LVYFHGGGFVLGSADTHDRLCRRLAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLA  60

Query  131  DRPEEY--KTSQVSVSGFSSGGTLALV-----GPTLFPPGTFQSVVAFYPATDLARD-PS  182
            ++  E     S+++V+G S+GG LA            P    Q  V  YP TDL  + PS
Sbjct  61   EQAAELGADPSRIAVAGDSAGGNLAAAVALRARDEGLPKPAGQ--VLIYPGTDLRTESPS  118

Query  183  LRTAPAPNAKPRSAFWTRIFREAYIGTMDPRDPRISPAYA-DASMYPTNMLVITAELDSS  241
                   +    +      F   Y+   D  DP  SP +A D S  P   LV+ AE D  
Sbjct  119  YLAREFADGPLLTRAAMDWFWRLYLPGADRDDPLASPLFASDLSGLPP-ALVVVAEFDPL  177

Query  242  ALEAEDLAKKAEMEGTASGRNVVIRRMKNCGHAF  275
              E E  A++      A+G  V +       H F
Sbjct  178  RDEGEAYAERLR----AAGVPVELIEYPGMPHGF  207


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 93.0 bits (232),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 69/165 (42%), Gaps = 33/165 (20%)

Query  54   LYKPSSEYARSSGPRPVLLNFYGSGFAIPLHGADDGFCRFIATTT------GYIVLDVEY  107
            +Y P +      GP PV++  +G G+     G  +    F+  T       GY V  + Y
Sbjct  3    IYLPKNA----KGPYPVVIWIHGGGW---NSGDKEADMGFMTNTVKALLKAGYAVASINY  55

Query  108  RLAPEHPFPAAVHDVEDAVKYVLDRPEEYK--TSQVSVSGFSSGGTLALVGPTL------  159
            RL+ +  FPA + DV+ A++++     +Y   T+++++ GFS+GG LAL+          
Sbjct  56   RLSTDAKFPAQIQDVKAAIRFLRANAAKYGIDTNKIALMGFSAGGHLALLAGLSNNNKEF  115

Query  160  ------------FPPGTFQSVVAFYPATDLARDPSLRTAPAPNAK  192
                               +VV FY  TDL    S  T     + 
Sbjct  116  EGNVGDYTPESSKESFKVNAVVDFYGPTDLLDMDSCGTHNDAKSP  160



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00021290

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  134     8e-39
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  93.0    4e-23


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 134 bits (339),  Expect = 8e-39, Method: Composition-based stats.
 Identities = 69/214 (32%), Positives = 97/214 (45%), Gaps = 16/214 (7%)

Query  71   LLNFYGSGFAIPLHGADDGFCRFIATTTGYIVLDVEYRLAPEHPFPAAVHDVEDAVKYVL  130
            L+ F+G GF +      D  CR +A   G +V+ V+YRLAPEHPFPAA  D   A++++ 
Sbjct  1    LVYFHGGGFVLGSADTHDRLCRRLAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLA  60

Query  131  DRPEEY--KTSQVSVSGFSSGGTLALV-----GPTLFPPGTFQSVVAFYPATDLARD-PS  182
            ++  E     S+++V+G S+GG LA            P    Q  V  YP TDL  + PS
Sbjct  61   EQAAELGADPSRIAVAGDSAGGNLAAAVALRARDEGLPKPAGQ--VLIYPGTDLRTESPS  118

Query  183  LRTAPAPNAKPRSAFWTRIFREAYIGTMDPRDPRISPAYA-DASMYPTNMLVITAELDSS  241
                   +    +      F   Y+   D  DP  SP +A D S  P   LV+ AE D  
Sbjct  119  YLAREFADGPLLTRAAMDWFWRLYLPGADRDDPLASPLFASDLSGLPP-ALVVVAEFDPL  177

Query  242  ALEAEDLAKKAEMEGTASGRNVVIRRMKNCGHAF  275
              E E  A++      A+G  V +       H F
Sbjct  178  RDEGEAYAERLR----AAGVPVELIEYPGMPHGF  207


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 93.0 bits (232),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 69/165 (42%), Gaps = 33/165 (20%)

Query  54   LYKPSSEYARSSGPRPVLLNFYGSGFAIPLHGADDGFCRFIATTT------GYIVLDVEY  107
            +Y P +      GP PV++  +G G+     G  +    F+  T       GY V  + Y
Sbjct  3    IYLPKNA----KGPYPVVIWIHGGGW---NSGDKEADMGFMTNTVKALLKAGYAVASINY  55

Query  108  RLAPEHPFPAAVHDVEDAVKYVLDRPEEYK--TSQVSVSGFSSGGTLALVGPTL------  159
            RL+ +  FPA + DV+ A++++     +Y   T+++++ GFS+GG LAL+          
Sbjct  56   RLSTDAKFPAQIQDVKAAIRFLRANAAKYGIDTNKIALMGFSAGGHLALLAGLSNNNKEF  115

Query  160  ------------FPPGTFQSVVAFYPATDLARDPSLRTAPAPNAK  192
                               +VV FY  TDL    S  T     + 
Sbjct  116  EGNVGDYTPESSKESFKVNAVVDFYGPTDLLDMDSCGTHNDAKSP  160



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00021288

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  134     8e-39
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  93.0    4e-23


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 134 bits (339),  Expect = 8e-39, Method: Composition-based stats.
 Identities = 69/214 (32%), Positives = 97/214 (45%), Gaps = 16/214 (7%)

Query  71   LLNFYGSGFAIPLHGADDGFCRFIATTTGYIVLDVEYRLAPEHPFPAAVHDVEDAVKYVL  130
            L+ F+G GF +      D  CR +A   G +V+ V+YRLAPEHPFPAA  D   A++++ 
Sbjct  1    LVYFHGGGFVLGSADTHDRLCRRLAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLA  60

Query  131  DRPEEY--KTSQVSVSGFSSGGTLALV-----GPTLFPPGTFQSVVAFYPATDLARD-PS  182
            ++  E     S+++V+G S+GG LA            P    Q  V  YP TDL  + PS
Sbjct  61   EQAAELGADPSRIAVAGDSAGGNLAAAVALRARDEGLPKPAGQ--VLIYPGTDLRTESPS  118

Query  183  LRTAPAPNAKPRSAFWTRIFREAYIGTMDPRDPRISPAYA-DASMYPTNMLVITAELDSS  241
                   +    +      F   Y+   D  DP  SP +A D S  P   LV+ AE D  
Sbjct  119  YLAREFADGPLLTRAAMDWFWRLYLPGADRDDPLASPLFASDLSGLPP-ALVVVAEFDPL  177

Query  242  ALEAEDLAKKAEMEGTASGRNVVIRRMKNCGHAF  275
              E E  A++      A+G  V +       H F
Sbjct  178  RDEGEAYAERLR----AAGVPVELIEYPGMPHGF  207


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 93.0 bits (232),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 69/165 (42%), Gaps = 33/165 (20%)

Query  54   LYKPSSEYARSSGPRPVLLNFYGSGFAIPLHGADDGFCRFIATTT------GYIVLDVEY  107
            +Y P +      GP PV++  +G G+     G  +    F+  T       GY V  + Y
Sbjct  3    IYLPKNA----KGPYPVVIWIHGGGW---NSGDKEADMGFMTNTVKALLKAGYAVASINY  55

Query  108  RLAPEHPFPAAVHDVEDAVKYVLDRPEEYK--TSQVSVSGFSSGGTLALVGPTL------  159
            RL+ +  FPA + DV+ A++++     +Y   T+++++ GFS+GG LAL+          
Sbjct  56   RLSTDAKFPAQIQDVKAAIRFLRANAAKYGIDTNKIALMGFSAGGHLALLAGLSNNNKEF  115

Query  160  ------------FPPGTFQSVVAFYPATDLARDPSLRTAPAPNAK  192
                               +VV FY  TDL    S  T     + 
Sbjct  116  EGNVGDYTPESSKESFKVNAVVDFYGPTDLLDMDSCGTHNDAKSP  160



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00021292

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00026486

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00021293

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00026487

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00021294

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433372 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like f...  86.3    2e-19
CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase famil...  68.1    1e-13
CDD:425738 pfam00535, Glycos_transf_2, Glycosyl transferase famil...  64.0    2e-12


>CDD:433372 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2. 
 Members of this family of prokaryotic proteins include putative 
glucosyltransferase, which are involved in bacterial 
capsule biosynthesis.
Length=230

 Score = 86.3 bits (214),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 57/241 (24%), Positives = 92/241 (38%), Gaps = 17/241 (7%)

Query  216  PTVDVFVTCCGEDDEVVLDTVRGACDQDYPRDRFRVIVLDDAKSATLEASVRQLAITHPN  275
            P V V V    ED  V+   +     Q YP     V+V+ +   A       ++A   P+
Sbjct  2    PDVSVVVPAFNEDS-VLGRVLEAILAQPYPPVE--VVVVVNPSDAETLDVAEEIAARFPD  58

Query  276  --LIYMAREKIPGKPHHFKAGNLNYGLEQVHHLPGGAGQFMAALDADMIPEQDWLRAVLP  333
              L  +   ++ G     K+  LN+G   V          +   D D +     L+  + 
Sbjct  59   VRLRVIRNARLLGP--TGKSRGLNHGFRAV------KSDLVVLHDDDSVLHPGTLKKYVQ  110

Query  334  HLLVDPKMALACPPQLFYNTPPSDPLAQSLDFFVHVIE--PIKDAMGVAWCTGSGYVVRR  391
                 PK+     P    N         +L+F +  +    ++ A+GV   +G+G  +RR
Sbjct  111  -YFDSPKVGAVGTPVFSLNRSTMLSALGALEFALRHLRMMSLRLALGVLPLSGAGSAIRR  169

Query  392  EALDEIGNF-PLGSLAEDVATSTLMLGKGWKTAYIHEPLQFGTVPEDFGGHLKQRTRWAI  450
            E L E+G F P   L +D +    +   GW+ AY  +       P      +KQR RW  
Sbjct  170  EVLKELGLFDPFFLLGDDKSLGRRLRRHGWRVAYAPDAAVRTVFPTYLAASIKQRARWVY  229

Query  451  G  451
            G
Sbjct  230  G  230


>CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 
2.  Members of this family of prokaryotic proteins include 
putative glucosyltransferases, which are involved in bacterial 
capsule biosynthesis.
Length=192

 Score = 68.1 bits (167),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 36/141 (26%), Positives = 57/141 (40%), Gaps = 10/141 (7%)

Query  317  LDADMIPEQDWLRAVLPHLLVDPKMALACPPQLFYNTPP------SDPLAQSLDFFVHVI  370
            LDAD +   D L  +   +   P++A+   P L  N         +   A      + V 
Sbjct  5    LDADTVLPPDCLLGIANEMA-SPEVAIIQGPILPMNVGNYLEELAALFFADDHGKSIPVR  63

Query  371  EPIKDAMGVAWCTGSGYVVRREALDEIGNFPLGSLAEDVATSTLMLGKGWKTAYIHEPLQ  430
              +   +      GSG  +RR AL E+G +  GS++ED      +   G++  +      
Sbjct  64   MALGRVLPFV---GSGAFLRRSALQEVGGWDDGSVSEDFDFGLRLQRAGYRVRFAPYSAV  120

Query  431  FGTVPEDFGGHLKQRTRWAIG  451
            +   P  F   L+QR RWA G
Sbjct  121  YEKSPLTFRDFLRQRRRWAYG  141


>CDD:425738 pfam00535, Glycos_transf_2, Glycosyl transferase family 2.  Diverse 
family, transferring sugar from UDP-glucose, UDP-N-acetyl- 
galactosamine, GDP-mannose or CDP-abequose, to a range 
of substrates including cellulose, dolichol phosphate and teichoic 
acids.
Length=166

 Score = 64.0 bits (156),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 40/183 (22%), Positives = 67/183 (37%), Gaps = 22/183 (12%)

Query  219  DVFVTCCGEDDEVVLDTVRGACDQDYPRDRFRVIVLDDAKSATLEASVRQLAITHPNLIY  278
             V +    E+   +L+T+    +Q YP   F +IV+DD  +        + A   P +  
Sbjct  1    SVIIPTYNEEK-YLLETLESLLNQTYPN--FEIIVVDDGSTDGTVEIAEEYAKKDPRVRV  57

Query  279  MAREKIPGKPHHFKAGNLNYGLEQVHHLPGGAGQFMAALDADMIPEQDWLRAVLPHLLVD  338
            +   +     +  KAG  N GL          G ++A LDAD     DWL  ++  L  D
Sbjct  58   IRLPE-----NRGKAGARNAGLRAAT------GDYIAFLDADDEVPPDWLEKLVEALEED  106

Query  339  PKMALACPPQLFYN-----TPPSDPLAQSLDFFVHVIEPIKDAMGVAWCTGSGYVVRREA  393
                +    +            +  +  S   F   +  +   +       + Y  RREA
Sbjct  107  GA-DVVVGSRYVIFGETGEYRRASRITLSRLPFFLGLRLLGLNLPFLIGGFALY--RREA  163

Query  394  LDE  396
            L+E
Sbjct  164  LEE  166



Lambda      K        H        a         alpha
   0.325    0.138    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 937117888


Query= TCONS_00021295

Length=335


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00021296

Length=727
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433372 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like f...  86.3    2e-19
CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase famil...  67.7    2e-13
CDD:425738 pfam00535, Glycos_transf_2, Glycosyl transferase famil...  63.6    2e-12


>CDD:433372 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2. 
 Members of this family of prokaryotic proteins include putative 
glucosyltransferase, which are involved in bacterial 
capsule biosynthesis.
Length=230

 Score = 86.3 bits (214),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 57/241 (24%), Positives = 92/241 (38%), Gaps = 17/241 (7%)

Query  205  PTVDVFVTCCGEDDEVVLDTVRGACDQDYPRDRFRVIVLDDAKSATLEASVRQLAITHPN  264
            P V V V    ED  V+   +     Q YP     V+V+ +   A       ++A   P+
Sbjct  2    PDVSVVVPAFNEDS-VLGRVLEAILAQPYPPVE--VVVVVNPSDAETLDVAEEIAARFPD  58

Query  265  --LIYMAREKIPGKPHHFKAGNLNYGLEQVHHLPGGAGQFMAALDADMIPEQDWLRAVLP  322
              L  +   ++ G     K+  LN+G   V          +   D D +     L+  + 
Sbjct  59   VRLRVIRNARLLGP--TGKSRGLNHGFRAV------KSDLVVLHDDDSVLHPGTLKKYVQ  110

Query  323  HLLVDPKMALACPPQLFYNTPPSDPLAQSLDFFVHVIE--PIKDAMGVAWCTGSGYVVRR  380
                 PK+     P    N         +L+F +  +    ++ A+GV   +G+G  +RR
Sbjct  111  -YFDSPKVGAVGTPVFSLNRSTMLSALGALEFALRHLRMMSLRLALGVLPLSGAGSAIRR  169

Query  381  EALDEIGNF-PLGSLAEDVATSTLMLGKGWKTAYIHEPLQFGTVPEDFGGHLKQRTRWAI  439
            E L E+G F P   L +D +    +   GW+ AY  +       P      +KQR RW  
Sbjct  170  EVLKELGLFDPFFLLGDDKSLGRRLRRHGWRVAYAPDAAVRTVFPTYLAASIKQRARWVY  229

Query  440  G  440
            G
Sbjct  230  G  230


>CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 
2.  Members of this family of prokaryotic proteins include 
putative glucosyltransferases, which are involved in bacterial 
capsule biosynthesis.
Length=192

 Score = 67.7 bits (166),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 36/141 (26%), Positives = 57/141 (40%), Gaps = 10/141 (7%)

Query  306  LDADMIPEQDWLRAVLPHLLVDPKMALACPPQLFYNTPP------SDPLAQSLDFFVHVI  359
            LDAD +   D L  +   +   P++A+   P L  N         +   A      + V 
Sbjct  5    LDADTVLPPDCLLGIANEMA-SPEVAIIQGPILPMNVGNYLEELAALFFADDHGKSIPVR  63

Query  360  EPIKDAMGVAWCTGSGYVVRREALDEIGNFPLGSLAEDVATSTLMLGKGWKTAYIHEPLQ  419
              +   +      GSG  +RR AL E+G +  GS++ED      +   G++  +      
Sbjct  64   MALGRVLPFV---GSGAFLRRSALQEVGGWDDGSVSEDFDFGLRLQRAGYRVRFAPYSAV  120

Query  420  FGTVPEDFGGHLKQRTRWAIG  440
            +   P  F   L+QR RWA G
Sbjct  121  YEKSPLTFRDFLRQRRRWAYG  141


>CDD:425738 pfam00535, Glycos_transf_2, Glycosyl transferase family 2.  Diverse 
family, transferring sugar from UDP-glucose, UDP-N-acetyl- 
galactosamine, GDP-mannose or CDP-abequose, to a range 
of substrates including cellulose, dolichol phosphate and teichoic 
acids.
Length=166

 Score = 63.6 bits (155),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 40/183 (22%), Positives = 67/183 (37%), Gaps = 22/183 (12%)

Query  208  DVFVTCCGEDDEVVLDTVRGACDQDYPRDRFRVIVLDDAKSATLEASVRQLAITHPNLIY  267
             V +    E+   +L+T+    +Q YP   F +IV+DD  +        + A   P +  
Sbjct  1    SVIIPTYNEEK-YLLETLESLLNQTYPN--FEIIVVDDGSTDGTVEIAEEYAKKDPRVRV  57

Query  268  MAREKIPGKPHHFKAGNLNYGLEQVHHLPGGAGQFMAALDADMIPEQDWLRAVLPHLLVD  327
            +   +     +  KAG  N GL          G ++A LDAD     DWL  ++  L  D
Sbjct  58   IRLPE-----NRGKAGARNAGLRAAT------GDYIAFLDADDEVPPDWLEKLVEALEED  106

Query  328  PKMALACPPQLFYN-----TPPSDPLAQSLDFFVHVIEPIKDAMGVAWCTGSGYVVRREA  382
                +    +            +  +  S   F   +  +   +       + Y  RREA
Sbjct  107  GA-DVVVGSRYVIFGETGEYRRASRITLSRLPFFLGLRLLGLNLPFLIGGFALY--RREA  163

Query  383  LDE  385
            L+E
Sbjct  164  LEE  166



Lambda      K        H        a         alpha
   0.325    0.139    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 921111216


Query= TCONS_00021297

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433372 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like f...  85.5    2e-19
CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase famil...  67.4    1e-13
CDD:425738 pfam00535, Glycos_transf_2, Glycosyl transferase famil...  63.6    2e-12


>CDD:433372 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2. 
 Members of this family of prokaryotic proteins include putative 
glucosyltransferase, which are involved in bacterial 
capsule biosynthesis.
Length=230

 Score = 85.5 bits (212),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 57/241 (24%), Positives = 92/241 (38%), Gaps = 17/241 (7%)

Query  26   PTVDVFVTCCGEDDEVVLDTVRGACDQDYPRDRFRVIVLDDAKSATLEASVRQLAITHPN  85
            P V V V    ED  V+   +     Q YP     V+V+ +   A       ++A   P+
Sbjct  2    PDVSVVVPAFNEDS-VLGRVLEAILAQPYPPVE--VVVVVNPSDAETLDVAEEIAARFPD  58

Query  86   --LIYMAREKIPGKPHHFKAGNLNYGLEQVHHLPGGAGQFMAALDADMIPEQDWLRAVLP  143
              L  +   ++ G     K+  LN+G   V          +   D D +     L+  + 
Sbjct  59   VRLRVIRNARLLGP--TGKSRGLNHGFRAV------KSDLVVLHDDDSVLHPGTLKKYVQ  110

Query  144  HLLVDPKMALACPPQLFYNTPPSDPLAQSLDFFVHVIE--PIKDAMGVAWCTGSGYVVRR  201
                 PK+     P    N         +L+F +  +    ++ A+GV   +G+G  +RR
Sbjct  111  -YFDSPKVGAVGTPVFSLNRSTMLSALGALEFALRHLRMMSLRLALGVLPLSGAGSAIRR  169

Query  202  EALDEIGNF-PLGSLAEDVATSTLMLGKGWKTAYIHEPLQFGTVPEDFGGHLKQRTRWAI  260
            E L E+G F P   L +D +    +   GW+ AY  +       P      +KQR RW  
Sbjct  170  EVLKELGLFDPFFLLGDDKSLGRRLRRHGWRVAYAPDAAVRTVFPTYLAASIKQRARWVY  229

Query  261  G  261
            G
Sbjct  230  G  230


>CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 
2.  Members of this family of prokaryotic proteins include 
putative glucosyltransferases, which are involved in bacterial 
capsule biosynthesis.
Length=192

 Score = 67.4 bits (165),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 36/141 (26%), Positives = 57/141 (40%), Gaps = 10/141 (7%)

Query  127  LDADMIPEQDWLRAVLPHLLVDPKMALACPPQLFYNTPP------SDPLAQSLDFFVHVI  180
            LDAD +   D L  +   +   P++A+   P L  N         +   A      + V 
Sbjct  5    LDADTVLPPDCLLGIANEMA-SPEVAIIQGPILPMNVGNYLEELAALFFADDHGKSIPVR  63

Query  181  EPIKDAMGVAWCTGSGYVVRREALDEIGNFPLGSLAEDVATSTLMLGKGWKTAYIHEPLQ  240
              +   +      GSG  +RR AL E+G +  GS++ED      +   G++  +      
Sbjct  64   MALGRVLPFV---GSGAFLRRSALQEVGGWDDGSVSEDFDFGLRLQRAGYRVRFAPYSAV  120

Query  241  FGTVPEDFGGHLKQRTRWAIG  261
            +   P  F   L+QR RWA G
Sbjct  121  YEKSPLTFRDFLRQRRRWAYG  141


>CDD:425738 pfam00535, Glycos_transf_2, Glycosyl transferase family 2.  Diverse 
family, transferring sugar from UDP-glucose, UDP-N-acetyl- 
galactosamine, GDP-mannose or CDP-abequose, to a range 
of substrates including cellulose, dolichol phosphate and teichoic 
acids.
Length=166

 Score = 63.6 bits (155),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 40/183 (22%), Positives = 67/183 (37%), Gaps = 22/183 (12%)

Query  29   DVFVTCCGEDDEVVLDTVRGACDQDYPRDRFRVIVLDDAKSATLEASVRQLAITHPNLIY  88
             V +    E+   +L+T+    +Q YP   F +IV+DD  +        + A   P +  
Sbjct  1    SVIIPTYNEEK-YLLETLESLLNQTYPN--FEIIVVDDGSTDGTVEIAEEYAKKDPRVRV  57

Query  89   MAREKIPGKPHHFKAGNLNYGLEQVHHLPGGAGQFMAALDADMIPEQDWLRAVLPHLLVD  148
            +   +     +  KAG  N GL          G ++A LDAD     DWL  ++  L  D
Sbjct  58   IRLPE-----NRGKAGARNAGLRAAT------GDYIAFLDADDEVPPDWLEKLVEALEED  106

Query  149  PKMALACPPQLFYN-----TPPSDPLAQSLDFFVHVIEPIKDAMGVAWCTGSGYVVRREA  203
                +    +            +  +  S   F   +  +   +       + Y  RREA
Sbjct  107  GA-DVVVGSRYVIFGETGEYRRASRITLSRLPFFLGLRLLGLNLPFLIGGFALY--RREA  163

Query  204  LDE  206
            L+E
Sbjct  164  LEE  166



Lambda      K        H        a         alpha
   0.327    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00026488

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433372 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like f...  85.5    2e-19
CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase famil...  67.4    1e-13
CDD:425738 pfam00535, Glycos_transf_2, Glycosyl transferase famil...  63.6    2e-12


>CDD:433372 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2. 
 Members of this family of prokaryotic proteins include putative 
glucosyltransferase, which are involved in bacterial 
capsule biosynthesis.
Length=230

 Score = 85.5 bits (212),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 57/241 (24%), Positives = 92/241 (38%), Gaps = 17/241 (7%)

Query  26   PTVDVFVTCCGEDDEVVLDTVRGACDQDYPRDRFRVIVLDDAKSATLEASVRQLAITHPN  85
            P V V V    ED  V+   +     Q YP     V+V+ +   A       ++A   P+
Sbjct  2    PDVSVVVPAFNEDS-VLGRVLEAILAQPYPPVE--VVVVVNPSDAETLDVAEEIAARFPD  58

Query  86   --LIYMAREKIPGKPHHFKAGNLNYGLEQVHHLPGGAGQFMAALDADMIPEQDWLRAVLP  143
              L  +   ++ G     K+  LN+G   V          +   D D +     L+  + 
Sbjct  59   VRLRVIRNARLLGP--TGKSRGLNHGFRAV------KSDLVVLHDDDSVLHPGTLKKYVQ  110

Query  144  HLLVDPKMALACPPQLFYNTPPSDPLAQSLDFFVHVIE--PIKDAMGVAWCTGSGYVVRR  201
                 PK+     P    N         +L+F +  +    ++ A+GV   +G+G  +RR
Sbjct  111  -YFDSPKVGAVGTPVFSLNRSTMLSALGALEFALRHLRMMSLRLALGVLPLSGAGSAIRR  169

Query  202  EALDEIGNF-PLGSLAEDVATSTLMLGKGWKTAYIHEPLQFGTVPEDFGGHLKQRTRWAI  260
            E L E+G F P   L +D +    +   GW+ AY  +       P      +KQR RW  
Sbjct  170  EVLKELGLFDPFFLLGDDKSLGRRLRRHGWRVAYAPDAAVRTVFPTYLAASIKQRARWVY  229

Query  261  G  261
            G
Sbjct  230  G  230


>CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 
2.  Members of this family of prokaryotic proteins include 
putative glucosyltransferases, which are involved in bacterial 
capsule biosynthesis.
Length=192

 Score = 67.4 bits (165),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 36/141 (26%), Positives = 57/141 (40%), Gaps = 10/141 (7%)

Query  127  LDADMIPEQDWLRAVLPHLLVDPKMALACPPQLFYNTPP------SDPLAQSLDFFVHVI  180
            LDAD +   D L  +   +   P++A+   P L  N         +   A      + V 
Sbjct  5    LDADTVLPPDCLLGIANEMA-SPEVAIIQGPILPMNVGNYLEELAALFFADDHGKSIPVR  63

Query  181  EPIKDAMGVAWCTGSGYVVRREALDEIGNFPLGSLAEDVATSTLMLGKGWKTAYIHEPLQ  240
              +   +      GSG  +RR AL E+G +  GS++ED      +   G++  +      
Sbjct  64   MALGRVLPFV---GSGAFLRRSALQEVGGWDDGSVSEDFDFGLRLQRAGYRVRFAPYSAV  120

Query  241  FGTVPEDFGGHLKQRTRWAIG  261
            +   P  F   L+QR RWA G
Sbjct  121  YEKSPLTFRDFLRQRRRWAYG  141


>CDD:425738 pfam00535, Glycos_transf_2, Glycosyl transferase family 2.  Diverse 
family, transferring sugar from UDP-glucose, UDP-N-acetyl- 
galactosamine, GDP-mannose or CDP-abequose, to a range 
of substrates including cellulose, dolichol phosphate and teichoic 
acids.
Length=166

 Score = 63.6 bits (155),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 40/183 (22%), Positives = 67/183 (37%), Gaps = 22/183 (12%)

Query  29   DVFVTCCGEDDEVVLDTVRGACDQDYPRDRFRVIVLDDAKSATLEASVRQLAITHPNLIY  88
             V +    E+   +L+T+    +Q YP   F +IV+DD  +        + A   P +  
Sbjct  1    SVIIPTYNEEK-YLLETLESLLNQTYPN--FEIIVVDDGSTDGTVEIAEEYAKKDPRVRV  57

Query  89   MAREKIPGKPHHFKAGNLNYGLEQVHHLPGGAGQFMAALDADMIPEQDWLRAVLPHLLVD  148
            +   +     +  KAG  N GL          G ++A LDAD     DWL  ++  L  D
Sbjct  58   IRLPE-----NRGKAGARNAGLRAAT------GDYIAFLDADDEVPPDWLEKLVEALEED  106

Query  149  PKMALACPPQLFYN-----TPPSDPLAQSLDFFVHVIEPIKDAMGVAWCTGSGYVVRREA  203
                +    +            +  +  S   F   +  +   +       + Y  RREA
Sbjct  107  GA-DVVVGSRYVIFGETGEYRRASRITLSRLPFFLGLRLLGLNLPFLIGGFALY--RREA  163

Query  204  LDE  206
            L+E
Sbjct  164  LEE  166



Lambda      K        H        a         alpha
   0.327    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00021299

Length=390


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00021298

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00021300

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00021301

Length=380


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00021302

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00026489

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00021303

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.144    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00021304

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:379112 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) do...  82.8    1e-20


>CDD:379112 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=139

 Score = 82.8 bits (205),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 49/150 (33%), Positives = 67/150 (45%), Gaps = 14/150 (9%)

Query  13   RLELVPLGHEHREFTMKLDMDPEVMKMVAFGRPFTEDEAIQVHTWLMNCATSVP---GFG  69
            RL L PL  E  E   +L  DPEVM+      P T +EA     WL     +     G+G
Sbjct  1    RLLLRPLTEEDAEALFELLSDPEVMRY-GVPWPLTLEEA---REWLARIWAADEAERGYG  56

Query  70   TWVGFAEGEFVGWWVLAPVPTTENPKSFRTDRTEYGFRVSPKFWGQGYAKEGAREMVRYA  129
              +   +  F+G   L              +R E G+ + P +WG+GYA E  R ++ YA
Sbjct  57   WAIELKDTGFIGSIGL-------YDIDGEPERAELGYWLGPDYWGKGYATEAVRALLEYA  109

Query  130  FEELGLAEVIGETMTINMASRAVMAGCGLT  159
            FEELGL  ++      N ASR V+   G  
Sbjct  110  FEELGLPRLVARIDPENTASRRVLEKLGFK  139



Lambda      K        H        a         alpha
   0.322    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00026491

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:379112 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) do...  82.8    1e-20


>CDD:379112 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=139

 Score = 82.8 bits (205),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 49/150 (33%), Positives = 67/150 (45%), Gaps = 14/150 (9%)

Query  13   RLELVPLGHEHREFTMKLDMDPEVMKMVAFGRPFTEDEAIQVHTWLMNCATSVP---GFG  69
            RL L PL  E  E   +L  DPEVM+      P T +EA     WL     +     G+G
Sbjct  1    RLLLRPLTEEDAEALFELLSDPEVMRY-GVPWPLTLEEA---REWLARIWAADEAERGYG  56

Query  70   TWVGFAEGEFVGWWVLAPVPTTENPKSFRTDRTEYGFRVSPKFWGQGYAKEGAREMVRYA  129
              +   +  F+G   L              +R E G+ + P +WG+GYA E  R ++ YA
Sbjct  57   WAIELKDTGFIGSIGL-------YDIDGEPERAELGYWLGPDYWGKGYATEAVRALLEYA  109

Query  130  FEELGLAEVIGETMTINMASRAVMAGCGLT  159
            FEELGL  ++      N ASR V+   G  
Sbjct  110  FEELGLPRLVARIDPENTASRRVLEKLGFK  139



Lambda      K        H        a         alpha
   0.322    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00026490

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:379112 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) do...  82.8    1e-20


>CDD:379112 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=139

 Score = 82.8 bits (205),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 49/150 (33%), Positives = 67/150 (45%), Gaps = 14/150 (9%)

Query  13   RLELVPLGHEHREFTMKLDMDPEVMKMVAFGRPFTEDEAIQVHTWLMNCATSVP---GFG  69
            RL L PL  E  E   +L  DPEVM+      P T +EA     WL     +     G+G
Sbjct  1    RLLLRPLTEEDAEALFELLSDPEVMRY-GVPWPLTLEEA---REWLARIWAADEAERGYG  56

Query  70   TWVGFAEGEFVGWWVLAPVPTTENPKSFRTDRTEYGFRVSPKFWGQGYAKEGAREMVRYA  129
              +   +  F+G   L              +R E G+ + P +WG+GYA E  R ++ YA
Sbjct  57   WAIELKDTGFIGSIGL-------YDIDGEPERAELGYWLGPDYWGKGYATEAVRALLEYA  109

Query  130  FEELGLAEVIGETMTINMASRAVMAGCGLT  159
            FEELGL  ++      N ASR V+   G  
Sbjct  110  FEELGLPRLVARIDPENTASRRVLEKLGFK  139



Lambda      K        H        a         alpha
   0.322    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00021305

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:379112 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) do...  82.8    1e-20


>CDD:379112 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=139

 Score = 82.8 bits (205),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 49/150 (33%), Positives = 67/150 (45%), Gaps = 14/150 (9%)

Query  13   RLELVPLGHEHREFTMKLDMDPEVMKMVAFGRPFTEDEAIQVHTWLMNCATSVP---GFG  69
            RL L PL  E  E   +L  DPEVM+      P T +EA     WL     +     G+G
Sbjct  1    RLLLRPLTEEDAEALFELLSDPEVMRY-GVPWPLTLEEA---REWLARIWAADEAERGYG  56

Query  70   TWVGFAEGEFVGWWVLAPVPTTENPKSFRTDRTEYGFRVSPKFWGQGYAKEGAREMVRYA  129
              +   +  F+G   L              +R E G+ + P +WG+GYA E  R ++ YA
Sbjct  57   WAIELKDTGFIGSIGL-------YDIDGEPERAELGYWLGPDYWGKGYATEAVRALLEYA  109

Query  130  FEELGLAEVIGETMTINMASRAVMAGCGLT  159
            FEELGL  ++      N ASR V+   G  
Sbjct  110  FEELGLPRLVARIDPENTASRRVLEKLGFK  139



Lambda      K        H        a         alpha
   0.322    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00026492

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:379112 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) do...  82.8    1e-20


>CDD:379112 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=139

 Score = 82.8 bits (205),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 49/150 (33%), Positives = 67/150 (45%), Gaps = 14/150 (9%)

Query  13   RLELVPLGHEHREFTMKLDMDPEVMKMVAFGRPFTEDEAIQVHTWLMNCATSVP---GFG  69
            RL L PL  E  E   +L  DPEVM+      P T +EA     WL     +     G+G
Sbjct  1    RLLLRPLTEEDAEALFELLSDPEVMRY-GVPWPLTLEEA---REWLARIWAADEAERGYG  56

Query  70   TWVGFAEGEFVGWWVLAPVPTTENPKSFRTDRTEYGFRVSPKFWGQGYAKEGAREMVRYA  129
              +   +  F+G   L              +R E G+ + P +WG+GYA E  R ++ YA
Sbjct  57   WAIELKDTGFIGSIGL-------YDIDGEPERAELGYWLGPDYWGKGYATEAVRALLEYA  109

Query  130  FEELGLAEVIGETMTINMASRAVMAGCGLT  159
            FEELGL  ++      N ASR V+   G  
Sbjct  110  FEELGLPRLVARIDPENTASRRVLEKLGFK  139



Lambda      K        H        a         alpha
   0.322    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00021306

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00021307

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00026493

Length=1314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  141     2e-39
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  136     4e-36


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 141 bits (358),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 66/154 (43%), Positives = 92/154 (60%), Gaps = 6/154 (4%)

Query  1089  LHGLDLSIQRGQFAALVGPSGAGKSTIVSLVERLYAPTAGTVAIDGHDIAYGD-TSFRSA  1147
             L  + L++  G+  ALVGP+GAGKST++ L+  L +PT GT+ +DG D+   +  S R  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1148  IAYVPQQSVLFNG-TIRFNLTLGARPGQTVSQEELEEACKAANIHDTIMQLPDGYDTLCG  1206
             I YV Q   LF   T+R NL LG    + +S+ E +   +A    +  + L D  D   G
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLL-LKGLSKREKDA--RAEEALEK-LGLGDLADRPVG  116

Query  1207  PNGDRLSGGQKQRLAIARALIRKPRLLLLDESTS  1240
                  LSGGQ+QR+AIARAL+ KP+LLLLDE T+
Sbjct  117   ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 126 bits (320),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 62/194 (32%), Positives = 92/194 (47%), Gaps = 47/194 (24%)

Query  396  LQGLSFVCPAGRQTAIVGLSGSGKSTVAGLIARFYDPVEGTVLLDGRDLRELNVRSVRSH  455
            L+ +S     G   A+VG +G+GKST+  LIA    P EGT+LLDG+DL +   +S+R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  456  ISLVQQEPYLLNR-SILENIALGLINSPKHEHLRPALMSDVLAKVAAAVRDGQSLTAASQ  514
            I  V Q+P L  R ++ EN+ LGL                                    
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------------------------------  84

Query  515  EHGDLVREIVELTLNAAALADATGFIERLPEGFGAS--VGAQGHLISGGQKQRISLARAL  572
                    +++        A A   +E+L  G  A   VG +   +SGGQ+QR+++ARAL
Sbjct  85   --------LLKGLSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVAIARAL  136

Query  573  VKDPRILILDEATA  586
            +  P++L+LDE TA
Sbjct  137  LTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 136 bits (345),  Expect = 4e-36, Method: Composition-based stats.
 Identities = 83/290 (29%), Positives = 144/290 (50%), Gaps = 30/290 (10%)

Query  43   LLVGFLAAVASGVPFPIMSIVFGQLVNGLNSATCDVDPSTAASYQAGINSKILLIVYVGI  102
            L++  L A+ SG   P   +V G++++ L     D DP T A     +N   L ++ +G+
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLLP---DGDPETQA-----LNVYSLALLLLGL  52

Query  103  AYFALIYIHTLCWNIFSERLAQRIRERYFSAILRQDTTFFDNRPAGEVSARITDEIAVVQ  162
            A F L ++ +   N   ERL++R+R + F  ILRQ  +FFD    GE+ +R+T++ + ++
Sbjct  53   AQFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIR  112

Query  163  QGTNEKVGIVISSVSFFVAAYVVAFIKDPKLAGMLVSLTPAYLTMALGGGYLVQKYVGRS  222
             G  EK+G++  S++  V   +V F    KL  +L+++ P Y         LV     + 
Sbjct  113  DGLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLY--------ILVSAVFAKI  164

Query  223  I--------EAMAMASSAALEAISNPLVVHAFSANARLEQRFVEVLAPALSAGVWKSVAV  274
            +        +A+A ASS A E++S    V AF       +++ + L  AL AG+ K+VA 
Sbjct  165  LRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVAN  224

Query  275  ALQAGLLYFIAFSANGLAFWQGSRQIASAVESNITGITIGDTFTVILILI  324
             L  G+  FI + +  LA W G+  + S        +++GD    + +  
Sbjct  225  GLSFGITQFIGYLSYALALWFGAYLVISGE------LSVGDLVAFLSLFA  268


 Score = 130 bits (328),  Expect = 8e-34, Method: Composition-based stats.
 Identities = 61/279 (22%), Positives = 123/279 (44%), Gaps = 10/279 (4%)

Query  733   LVIATVGAIVIGGTYCGSALIFGNVVSKLSYCEEPGSIRHAGEL--FGLLFFILAIIEFT  790
             L++A + AI+ G       L+ G ++  L     P        L  + L   +L + +F 
Sbjct  1     LILAILLAILSGAISPAFPLVLGRILDVLL----PDGDPETQALNVYSLALLLLGLAQFI  56

Query  791   ANFSSWSLFGWVAEQVVYKVRVLSLRSILEQDLAWHESQGRNPSLLLGLITKDSTALGGL  850
              +F    L     E++  ++R    + IL Q +++      +   LL  +T D++ +   
Sbjct  57    LSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFF--DTNSVGELLSRLTNDTSKIRDG  114

Query  851   TGSVICTLLSILVSLVATITMTHIIAWKIAIVCLSVVPLLLGAGYMRVTTLARFEEEHLE  910
              G  +  L   L ++V  I +     WK+ +V L+V+PL +    +    L +   +  +
Sbjct  115   LGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQK  174

Query  911   AFANSNAITVEAVNSIKTVMSLSLEHEILGTYRRSLQEPMRQITKHSAWANLWLAVGYGL  970
             A A ++++  E+++ I+TV +   E   L  Y ++L+E ++   K +    L   +   +
Sbjct  175   AVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFI  234

Query  971   SNFLYALAYWWGSTRIMAGEYTPTQF--FIVQLALLVSS  1007
                 YALA W+G+  +++GE +      F+   A L   
Sbjct  235   GYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273



Lambda      K        H        a         alpha
   0.320    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1673945600


Query= TCONS_00026494

Length=999
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  140     3e-39
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  135     1e-35


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 140 bits (356),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 66/154 (43%), Positives = 92/154 (60%), Gaps = 6/154 (4%)

Query  774  LHGLDLSIQRGQFAALVGPSGAGKSTIVSLVERLYAPTAGTVAIDGHDIAYGD-TSFRSA  832
            L  + L++  G+  ALVGP+GAGKST++ L+  L +PT GT+ +DG D+   +  S R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  833  IAYVPQQSVLFNG-TIRFNLTLGARPGQTVSQEELEEACKAANIHDTIMQLPDGYDTLCG  891
            I YV Q   LF   T+R NL LG    + +S+ E +   +A    +  + L D  D   G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLL-LKGLSKREKDA--RAEEALEK-LGLGDLADRPVG  116

Query  892  PNGDRLSGGQKQRLAIARALIRKPRLLLLDESTS  925
                 LSGGQ+QR+AIARAL+ KP+LLLLDE T+
Sbjct  117  ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 126 bits (319),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 62/194 (32%), Positives = 92/194 (47%), Gaps = 47/194 (24%)

Query  81   LQGLSFVCPAGRQTAIVGLSGSGKSTVAGLIARFYDPVEGTVLLDGRDLRELNVRSVRSH  140
            L+ +S     G   A+VG +G+GKST+  LIA    P EGT+LLDG+DL +   +S+R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  141  ISLVQQEPYLLNR-SILENIALGLINSPKHEHLRPALMSDVLAKVAAAVRDGQSLTAASQ  199
            I  V Q+P L  R ++ EN+ LGL                                    
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------------------------------  84

Query  200  EHGDLVREIVELTLNAAALADATGFIERLPEGFGAS--VGAQGHLISGGQKQRISLARAL  257
                    +++        A A   +E+L  G  A   VG +   +SGGQ+QR+++ARAL
Sbjct  85   --------LLKGLSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVAIARAL  136

Query  258  VKDPRILILDEATA  271
            +  P++L+LDE TA
Sbjct  137  LTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 135 bits (341),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 61/279 (22%), Positives = 123/279 (44%), Gaps = 10/279 (4%)

Query  418  LVIATVGAIVIGGTYCGSALIFGNVVSKLSYCEEPGSIRHAGEL--FGLLFFILAIIEFT  475
            L++A + AI+ G       L+ G ++  L     P        L  + L   +L + +F 
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLL----PDGDPETQALNVYSLALLLLGLAQFI  56

Query  476  ANFSSWSLFGWVAEQVVYKVRVLSLRSILEQDLAWHESQGRNPSLLLGLITKDSTALGGL  535
             +F    L     E++  ++R    + IL Q +++      +   LL  +T D++ +   
Sbjct  57   LSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFF--DTNSVGELLSRLTNDTSKIRDG  114

Query  536  TGSVICTLLSILVSLVATITMTHIIAWKIAIVCLSVVPLLLGAGYMRVTTLARFEEEHLE  595
             G  +  L   L ++V  I +     WK+ +V L+V+PL +    +    L +   +  +
Sbjct  115  LGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQK  174

Query  596  AFANSNAITVEAVNSIKTVMSLSLEHEILGTYRRSLQEPMRQITKHSAWANLWLAVGYGL  655
            A A ++++  E+++ I+TV +   E   L  Y ++L+E ++   K +    L   +   +
Sbjct  175  AVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFI  234

Query  656  SNFLYALAYWWGSTRIMAGEYTPTQF--FIVQLALLVSS  692
                YALA W+G+  +++GE +      F+   A L   
Sbjct  235  GYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273



Lambda      K        H        a         alpha
   0.319    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1278536028


Query= TCONS_00021308

Length=999
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  140     3e-39
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  135     1e-35


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 140 bits (356),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 66/154 (43%), Positives = 92/154 (60%), Gaps = 6/154 (4%)

Query  774  LHGLDLSIQRGQFAALVGPSGAGKSTIVSLVERLYAPTAGTVAIDGHDIAYGD-TSFRSA  832
            L  + L++  G+  ALVGP+GAGKST++ L+  L +PT GT+ +DG D+   +  S R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  833  IAYVPQQSVLFNG-TIRFNLTLGARPGQTVSQEELEEACKAANIHDTIMQLPDGYDTLCG  891
            I YV Q   LF   T+R NL LG    + +S+ E +   +A    +  + L D  D   G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLL-LKGLSKREKDA--RAEEALEK-LGLGDLADRPVG  116

Query  892  PNGDRLSGGQKQRLAIARALIRKPRLLLLDESTS  925
                 LSGGQ+QR+AIARAL+ KP+LLLLDE T+
Sbjct  117  ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 126 bits (319),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 62/194 (32%), Positives = 92/194 (47%), Gaps = 47/194 (24%)

Query  81   LQGLSFVCPAGRQTAIVGLSGSGKSTVAGLIARFYDPVEGTVLLDGRDLRELNVRSVRSH  140
            L+ +S     G   A+VG +G+GKST+  LIA    P EGT+LLDG+DL +   +S+R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  141  ISLVQQEPYLLNR-SILENIALGLINSPKHEHLRPALMSDVLAKVAAAVRDGQSLTAASQ  199
            I  V Q+P L  R ++ EN+ LGL                                    
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------------------------------  84

Query  200  EHGDLVREIVELTLNAAALADATGFIERLPEGFGAS--VGAQGHLISGGQKQRISLARAL  257
                    +++        A A   +E+L  G  A   VG +   +SGGQ+QR+++ARAL
Sbjct  85   --------LLKGLSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVAIARAL  136

Query  258  VKDPRILILDEATA  271
            +  P++L+LDE TA
Sbjct  137  LTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 135 bits (341),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 61/279 (22%), Positives = 123/279 (44%), Gaps = 10/279 (4%)

Query  418  LVIATVGAIVIGGTYCGSALIFGNVVSKLSYCEEPGSIRHAGEL--FGLLFFILAIIEFT  475
            L++A + AI+ G       L+ G ++  L     P        L  + L   +L + +F 
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLL----PDGDPETQALNVYSLALLLLGLAQFI  56

Query  476  ANFSSWSLFGWVAEQVVYKVRVLSLRSILEQDLAWHESQGRNPSLLLGLITKDSTALGGL  535
             +F    L     E++  ++R    + IL Q +++      +   LL  +T D++ +   
Sbjct  57   LSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFF--DTNSVGELLSRLTNDTSKIRDG  114

Query  536  TGSVICTLLSILVSLVATITMTHIIAWKIAIVCLSVVPLLLGAGYMRVTTLARFEEEHLE  595
             G  +  L   L ++V  I +     WK+ +V L+V+PL +    +    L +   +  +
Sbjct  115  LGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQK  174

Query  596  AFANSNAITVEAVNSIKTVMSLSLEHEILGTYRRSLQEPMRQITKHSAWANLWLAVGYGL  655
            A A ++++  E+++ I+TV +   E   L  Y ++L+E ++   K +    L   +   +
Sbjct  175  AVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFI  234

Query  656  SNFLYALAYWWGSTRIMAGEYTPTQF--FIVQLALLVSS  692
                YALA W+G+  +++GE +      F+   A L   
Sbjct  235  GYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273



Lambda      K        H        a         alpha
   0.319    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 1278536028


Query= TCONS_00021309

Length=1314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  141     2e-39
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  136     4e-36


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 141 bits (358),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 66/154 (43%), Positives = 92/154 (60%), Gaps = 6/154 (4%)

Query  1089  LHGLDLSIQRGQFAALVGPSGAGKSTIVSLVERLYAPTAGTVAIDGHDIAYGD-TSFRSA  1147
             L  + L++  G+  ALVGP+GAGKST++ L+  L +PT GT+ +DG D+   +  S R  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1148  IAYVPQQSVLFNG-TIRFNLTLGARPGQTVSQEELEEACKAANIHDTIMQLPDGYDTLCG  1206
             I YV Q   LF   T+R NL LG    + +S+ E +   +A    +  + L D  D   G
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLL-LKGLSKREKDA--RAEEALEK-LGLGDLADRPVG  116

Query  1207  PNGDRLSGGQKQRLAIARALIRKPRLLLLDESTS  1240
                  LSGGQ+QR+AIARAL+ KP+LLLLDE T+
Sbjct  117   ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 126 bits (320),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 62/194 (32%), Positives = 92/194 (47%), Gaps = 47/194 (24%)

Query  396  LQGLSFVCPAGRQTAIVGLSGSGKSTVAGLIARFYDPVEGTVLLDGRDLRELNVRSVRSH  455
            L+ +S     G   A+VG +G+GKST+  LIA    P EGT+LLDG+DL +   +S+R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  456  ISLVQQEPYLLNR-SILENIALGLINSPKHEHLRPALMSDVLAKVAAAVRDGQSLTAASQ  514
            I  V Q+P L  R ++ EN+ LGL                                    
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------------------------------  84

Query  515  EHGDLVREIVELTLNAAALADATGFIERLPEGFGAS--VGAQGHLISGGQKQRISLARAL  572
                    +++        A A   +E+L  G  A   VG +   +SGGQ+QR+++ARAL
Sbjct  85   --------LLKGLSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVAIARAL  136

Query  573  VKDPRILILDEATA  586
            +  P++L+LDE TA
Sbjct  137  LTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 136 bits (345),  Expect = 4e-36, Method: Composition-based stats.
 Identities = 83/290 (29%), Positives = 144/290 (50%), Gaps = 30/290 (10%)

Query  43   LLVGFLAAVASGVPFPIMSIVFGQLVNGLNSATCDVDPSTAASYQAGINSKILLIVYVGI  102
            L++  L A+ SG   P   +V G++++ L     D DP T A     +N   L ++ +G+
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLLP---DGDPETQA-----LNVYSLALLLLGL  52

Query  103  AYFALIYIHTLCWNIFSERLAQRIRERYFSAILRQDTTFFDNRPAGEVSARITDEIAVVQ  162
            A F L ++ +   N   ERL++R+R + F  ILRQ  +FFD    GE+ +R+T++ + ++
Sbjct  53   AQFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIR  112

Query  163  QGTNEKVGIVISSVSFFVAAYVVAFIKDPKLAGMLVSLTPAYLTMALGGGYLVQKYVGRS  222
             G  EK+G++  S++  V   +V F    KL  +L+++ P Y         LV     + 
Sbjct  113  DGLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLY--------ILVSAVFAKI  164

Query  223  I--------EAMAMASSAALEAISNPLVVHAFSANARLEQRFVEVLAPALSAGVWKSVAV  274
            +        +A+A ASS A E++S    V AF       +++ + L  AL AG+ K+VA 
Sbjct  165  LRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVAN  224

Query  275  ALQAGLLYFIAFSANGLAFWQGSRQIASAVESNITGITIGDTFTVILILI  324
             L  G+  FI + +  LA W G+  + S        +++GD    + +  
Sbjct  225  GLSFGITQFIGYLSYALALWFGAYLVISGE------LSVGDLVAFLSLFA  268


 Score = 130 bits (328),  Expect = 8e-34, Method: Composition-based stats.
 Identities = 61/279 (22%), Positives = 123/279 (44%), Gaps = 10/279 (4%)

Query  733   LVIATVGAIVIGGTYCGSALIFGNVVSKLSYCEEPGSIRHAGEL--FGLLFFILAIIEFT  790
             L++A + AI+ G       L+ G ++  L     P        L  + L   +L + +F 
Sbjct  1     LILAILLAILSGAISPAFPLVLGRILDVLL----PDGDPETQALNVYSLALLLLGLAQFI  56

Query  791   ANFSSWSLFGWVAEQVVYKVRVLSLRSILEQDLAWHESQGRNPSLLLGLITKDSTALGGL  850
              +F    L     E++  ++R    + IL Q +++      +   LL  +T D++ +   
Sbjct  57    LSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFF--DTNSVGELLSRLTNDTSKIRDG  114

Query  851   TGSVICTLLSILVSLVATITMTHIIAWKIAIVCLSVVPLLLGAGYMRVTTLARFEEEHLE  910
              G  +  L   L ++V  I +     WK+ +V L+V+PL +    +    L +   +  +
Sbjct  115   LGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQK  174

Query  911   AFANSNAITVEAVNSIKTVMSLSLEHEILGTYRRSLQEPMRQITKHSAWANLWLAVGYGL  970
             A A ++++  E+++ I+TV +   E   L  Y ++L+E ++   K +    L   +   +
Sbjct  175   AVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFI  234

Query  971   SNFLYALAYWWGSTRIMAGEYTPTQF--FIVQLALLVSS  1007
                 YALA W+G+  +++GE +      F+   A L   
Sbjct  235   GYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273



Lambda      K        H        a         alpha
   0.320    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1673945600


Query= TCONS_00021311

Length=1255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  141     3e-39
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  130     5e-34


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 141 bits (357),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 66/154 (43%), Positives = 92/154 (60%), Gaps = 6/154 (4%)

Query  1030  LHGLDLSIQRGQFAALVGPSGAGKSTIVSLVERLYAPTAGTVAIDGHDIAYGD-TSFRSA  1088
             L  + L++  G+  ALVGP+GAGKST++ L+  L +PT GT+ +DG D+   +  S R  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1089  IAYVPQQSVLFNG-TIRFNLTLGARPGQTVSQEELEEACKAANIHDTIMQLPDGYDTLCG  1147
             I YV Q   LF   T+R NL LG    + +S+ E +   +A    +  + L D  D   G
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLL-LKGLSKREKDA--RAEEALEK-LGLGDLADRPVG  116

Query  1148  PNGDRLSGGQKQRLAIARALIRKPRLLLLDESTS  1181
                  LSGGQ+QR+AIARAL+ KP+LLLLDE T+
Sbjct  117   ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 126 bits (320),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 62/194 (32%), Positives = 92/194 (47%), Gaps = 47/194 (24%)

Query  337  LQGLSFVCPAGRQTAIVGLSGSGKSTVAGLIARFYDPVEGTVLLDGRDLRELNVRSVRSH  396
            L+ +S     G   A+VG +G+GKST+  LIA    P EGT+LLDG+DL +   +S+R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  397  ISLVQQEPYLLNR-SILENIALGLINSPKHEHLRPALMSDVLAKVAAAVRDGQSLTAASQ  455
            I  V Q+P L  R ++ EN+ LGL                                    
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------------------------------  84

Query  456  EHGDLVREIVELTLNAAALADATGFIERLPEGFGAS--VGAQGHLISGGQKQRISLARAL  513
                    +++        A A   +E+L  G  A   VG +   +SGGQ+QR+++ARAL
Sbjct  85   --------LLKGLSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVAIARAL  136

Query  514  VKDPRILILDEATA  527
            +  P++L+LDE TA
Sbjct  137  LTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 130 bits (329),  Expect = 5e-34, Method: Composition-based stats.
 Identities = 61/279 (22%), Positives = 123/279 (44%), Gaps = 10/279 (4%)

Query  674  LVIATVGAIVIGGTYCGSALIFGNVVSKLSYCEEPGSIRHAGEL--FGLLFFILAIIEFT  731
            L++A + AI+ G       L+ G ++  L     P        L  + L   +L + +F 
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLL----PDGDPETQALNVYSLALLLLGLAQFI  56

Query  732  ANFSSWSLFGWVAEQVVYKVRVLSLRSILEQDLAWHESQGRNPSLLLGLITKDSTALGGL  791
             +F    L     E++  ++R    + IL Q +++      +   LL  +T D++ +   
Sbjct  57   LSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFF--DTNSVGELLSRLTNDTSKIRDG  114

Query  792  TGSVICTLLSILVSLVATITMTHIIAWKIAIVCLSVVPLLLGAGYMRVTTLARFEEEHLE  851
             G  +  L   L ++V  I +     WK+ +V L+V+PL +    +    L +   +  +
Sbjct  115  LGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQK  174

Query  852  AFANSNAITVEAVNSIKTVMSLSLEHEILGTYRRSLQEPMRQITKHSAWANLWLAVGYGL  911
            A A ++++  E+++ I+TV +   E   L  Y ++L+E ++   K +    L   +   +
Sbjct  175  AVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFI  234

Query  912  SNFLYALAYWWGSTRIMAGEYTPTQF--FIVQLALLVSS  948
                YALA W+G+  +++GE +      F+   A L   
Sbjct  235  GYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273


 Score = 126 bits (319),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 135/273 (49%), Gaps = 30/273 (11%)

Query  1    MSIVFGQLVNGLNSATCDVDPSTAASYQAGINSKILLIVYVGIAYFALIYIHTLCWNIFS  60
              +V G++++ L     D DP T A     +N   L ++ +G+A F L ++ +   N   
Sbjct  18   FPLVLGRILDVLLP---DGDPETQA-----LNVYSLALLLLGLAQFILSFLQSYLLNHTG  69

Query  61   ERLAQRIRERYFSAILRQDTTFFDNRPAGEVSARITDEIAVVQQGTNEKVGIVISSVSFF  120
            ERL++R+R + F  ILRQ  +FFD    GE+ +R+T++ + ++ G  EK+G++  S++  
Sbjct  70   ERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGEKLGLLFQSLATI  129

Query  121  VAAYVVAFIKDPKLAGMLVSLTPAYLTMALGGGYLVQKYVGRSI--------EAMAMASS  172
            V   +V F    KL  +L+++ P Y         LV     + +        +A+A ASS
Sbjct  130  VGGIIVMFYYGWKLTLVLLAVLPLY--------ILVSAVFAKILRKLSRKEQKAVAKASS  181

Query  173  AALEAISNPLVVHAFSANARLEQRFVEVLAPALSAGVWKSVAVALQAGLLYFIAFSANGL  232
             A E++S    V AF       +++ + L  AL AG+ K+VA  L  G+  FI + +  L
Sbjct  182  VAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYAL  241

Query  233  AFWQGSRQIASAVESNITGITIGDTFTVILILI  265
            A W G+  + S        +++GD    + +  
Sbjct  242  ALWFGAYLVISGE------LSVGDLVAFLSLFA  268



Lambda      K        H        a         alpha
   0.320    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1592726200


Query= TCONS_00021312

Length=961
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  140     4e-39
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  135     7e-36


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 140 bits (355),  Expect = 4e-39, Method: Composition-based stats.
 Identities = 66/154 (43%), Positives = 92/154 (60%), Gaps = 6/154 (4%)

Query  736  LHGLDLSIQRGQFAALVGPSGAGKSTIVSLVERLYAPTAGTVAIDGHDIAYGD-TSFRSA  794
            L  + L++  G+  ALVGP+GAGKST++ L+  L +PT GT+ +DG D+   +  S R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  795  IAYVPQQSVLFNG-TIRFNLTLGARPGQTVSQEELEEACKAANIHDTIMQLPDGYDTLCG  853
            I YV Q   LF   T+R NL LG    + +S+ E +   +A    +  + L D  D   G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLL-LKGLSKREKDA--RAEEALEK-LGLGDLADRPVG  116

Query  854  PNGDRLSGGQKQRLAIARALIRKPRLLLLDESTS  887
                 LSGGQ+QR+AIARAL+ KP+LLLLDE T+
Sbjct  117  ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 126 bits (318),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 62/194 (32%), Positives = 92/194 (47%), Gaps = 47/194 (24%)

Query  43   LQGLSFVCPAGRQTAIVGLSGSGKSTVAGLIARFYDPVEGTVLLDGRDLRELNVRSVRSH  102
            L+ +S     G   A+VG +G+GKST+  LIA    P EGT+LLDG+DL +   +S+R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  103  ISLVQQEPYLLNR-SILENIALGLINSPKHEHLRPALMSDVLAKVAAAVRDGQSLTAASQ  161
            I  V Q+P L  R ++ EN+ LGL                                    
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGL------------------------------------  84

Query  162  EHGDLVREIVELTLNAAALADATGFIERLPEGFGAS--VGAQGHLISGGQKQRISLARAL  219
                    +++        A A   +E+L  G  A   VG +   +SGGQ+QR+++ARAL
Sbjct  85   --------LLKGLSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVAIARAL  136

Query  220  VKDPRILILDEATA  233
            +  P++L+LDE TA
Sbjct  137  LTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 135 bits (342),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 61/279 (22%), Positives = 123/279 (44%), Gaps = 10/279 (4%)

Query  380  LVIATVGAIVIGGTYCGSALIFGNVVSKLSYCEEPGSIRHAGEL--FGLLFFILAIIEFT  437
            L++A + AI+ G       L+ G ++  L     P        L  + L   +L + +F 
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLL----PDGDPETQALNVYSLALLLLGLAQFI  56

Query  438  ANFSSWSLFGWVAEQVVYKVRVLSLRSILEQDLAWHESQGRNPSLLLGLITKDSTALGGL  497
             +F    L     E++  ++R    + IL Q +++      +   LL  +T D++ +   
Sbjct  57   LSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFF--DTNSVGELLSRLTNDTSKIRDG  114

Query  498  TGSVICTLLSILVSLVATITMTHIIAWKIAIVCLSVVPLLLGAGYMRVTTLARFEEEHLE  557
             G  +  L   L ++V  I +     WK+ +V L+V+PL +    +    L +   +  +
Sbjct  115  LGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQK  174

Query  558  AFANSNAITVEAVNSIKTVMSLSLEHEILGTYRRSLQEPMRQITKHSAWANLWLAVGYGL  617
            A A ++++  E+++ I+TV +   E   L  Y ++L+E ++   K +    L   +   +
Sbjct  175  AVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFI  234

Query  618  SNFLYALAYWWGSTRIMAGEYTPTQF--FIVQLALLVSS  654
                YALA W+G+  +++GE +      F+   A L   
Sbjct  235  GYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGP  273



Lambda      K        H        a         alpha
   0.319    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1224732740


Query= TCONS_00021313

Length=226


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00021315

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.139    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00021314

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00021316

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00021318

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00026496

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00026497

Length=184
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         102     2e-26


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 102 bits (256),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 1/124 (1%)

Query  2    CWTLLAAGFCFWIPASSSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEVFPLTHREVGM  61
            C+ +L       +  S  A +  I  FI LF  F++ G GPVP+   +E+FPL+ R   M
Sbjct  330  CFVILGIVALLGVSKSDWAGIVAIV-FIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAM  388

Query  62   AWAVATNNFWAAVLSLTFPYMLRDFKPQGAFGFYAGLNIIALLLIFFFLPETKQRSLEEL  121
            A A A N     ++   FP +         F  +AGL ++ ++ +FFF+PETK R+LEE+
Sbjct  389  ALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEI  448

Query  122  DRVF  125
            D +F
Sbjct  449  DELF  452



Lambda      K        H        a         alpha
   0.328    0.142    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00026498

Length=220
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         143     5e-41


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 143 bits (362),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 74/220 (34%), Positives = 110/220 (50%), Gaps = 15/220 (7%)

Query  1    MGLKEVTVPVFSAETVPTSIRGGLVMSWQVWTAFGIFLGTCANLAVVNTGKI-AWRLQLG  59
            +G   V  P++ +E  P  +RG L   +Q+   FGI L     L +  T     WR+ LG
Sbjct  116  VGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLG  175

Query  60   SAFIPAVPLLLGIWFCPESPRWLLSKENPRKAYESLLRLRNSPLQAARDLYYIHAQIKME  119
               +PA+ L++G+ F PESPRWL+ K    +A E L +LR  P     D      +  +E
Sbjct  176  LQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPD---VDRELDEIKDSLE  232

Query  120  KRLLRESEFTRGGNTLARFLELFTVPRVRRATQASGIVMIAQQMCGINIIAFYSSTIFEQ  179
                 E    +         ELF+    R+      ++ I QQ+ GIN I +YS+TIFE 
Sbjct  233  AGQEAEKASWK---------ELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFEN  283

Query  180  AGATNIQALLASFGFGLVNFLFAWPAVWTIDTFGRRWLLL  219
             G +   + L +   G+VNF+F + A++ +D FGRR LLL
Sbjct  284  LGLS--DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLL  321



Lambda      K        H        a         alpha
   0.327    0.139    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00021329

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         281     2e-89
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            64.0    2e-11


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 281 bits (720),  Expect = 2e-89, Method: Composition-based stats.
 Identities = 153/468 (33%), Positives = 235/468 (50%), Gaps = 30/468 (6%)

Query  100  SVAAAIQGWDQTGSNGANLT---FAQQFGIPQDGCVTRAECTRNQWIVGVINAMPYITIA  156
            ++   + G+D TG  GA LT   F + FG+ +      A    +  IV + +   +I  +
Sbjct  6    ALGGFLFGYD-TGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIG-S  63

Query  157  LFAGWISDPLNHWLGRKAVIAIAAVFSLVAPI---ACGVTQNWHQLLGCRILLGIGMGLK  213
            LFAG + D      GRK  + IA V  ++  +   A     + +QL+  R+L+GIG+G  
Sbjct  64   LFAGKLGD----RFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGA  119

Query  214  EVTVPVFSAETVPTSIRGGLVMSWQVWTAFGIFLGTCANLAVVNTGKI-AWRLQLGSAFI  272
             V  P++ +E  P  +RG L   +Q+   FGI L     L +  T     WR+ LG   +
Sbjct  120  SVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLV  179

Query  273  PAVPLLLGIWFCPESPRWLLSKENPRKAYESLLRLRNSPLQAARDLYYIHAQIKMEKRLL  332
            PA+ L++G+ F PESPRWL+ K    +A E L +LR  P     D      +  +E    
Sbjct  180  PALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPD---VDRELDEIKDSLEAGQE  236

Query  333  RESEFTRGGNTLARFLELFTVPRVRRATQASGIVMIAQQMCGINIIAFYSSTIFEQAGAT  392
             E    +         ELF+    R+      ++ I QQ+ GIN I +YS+TIFE  G +
Sbjct  237  AEKASWK---------ELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLS  287

Query  393  NIQALLASFGFGLVNFLFAWPAVWTIDTFGRRWLLLATFPNM--CWTLLAAGFCFWIPAS  450
            +  + L +   G+VNF+F + A++ +D FGRR LLL     M  C+ +L       +  S
Sbjct  288  D--SFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKS  345

Query  451  SSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEVFPLTHREVGMAWAVATNNFWAAVLSL  510
              A +  I  FI LF  F++ G GPVP+   +E+FPL+ R   MA A A N     ++  
Sbjct  346  DWAGIVAIV-FIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGF  404

Query  511  TFPYMLRDFKPQGAFGFYAGLNIIALLLIFFFLPETKQRSLEELDRVF  558
             FP +         F  +AGL ++ ++ +FFF+PETK R+LEE+D +F
Sbjct  405  LFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 64.0 bits (156),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 103/365 (28%), Gaps = 58/365 (16%)

Query  143  IVGVINAMPYITIALFAGWISDPLNHWLGRKAVIAIAAVFSLVAPIACGVTQNWHQLLGC  202
            ++  + ++ Y      AG +SD      GR+ V+ I  +   +  +      +   LL  
Sbjct  36   LLLTLFSLGYALAQPLAGRLSDRF----GRRRVLLIGLLLFALGLLLLLFASSLWLLLVL  91

Query  203  RILLGIGMGLKEVTVPVFSAETVPTSIRGGLVMSWQVWTAFGIFLGTCANLAVVNTGKIA  262
            R+L G+G G          A+  P   RG  +         G  LG      +       
Sbjct  92   RVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLA--SLFG  149

Query  263  WRLQLGSAFIPAVPLLLGIWFCPESPRWLLSKENPRKAYESLLRLRNSPLQAARDLYYIH  322
            WR    +  I A+  LL           LL +  P              L          
Sbjct  150  WR---AAFLILAILSLLAAVL------LLLPRPPPESKRPKPAEEARLSL----------  190

Query  323  AQIKMEKRLLRESEFTRGGNTLARFLELFTVPRVRRATQASGIVMIAQQMCGINIIAFYS  382
                                 +  +  L   P +        ++ +         +  Y 
Sbjct  191  ---------------------IVAWKALLRDPVL------WLLLALLLFGFAFFGLLTYL  223

Query  383  STIFEQAGATNIQALLASFGFGLVNFLFAWPAVWTIDTFGRRWLLLATFPNMCWTLLAAG  442
                E  G + + A L     GL+  +         D  GRR  LL     +   +LAA 
Sbjct  224  PLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLL---ILAAL  280

Query  443  FCFWIPASSSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEVFPLTHREVGMAWAVATNN  502
                +  + S+   L+AL +  F         P      +++ P   R           +
Sbjct  281  GLLLLSLTLSSLWLLLALLLLGFGFGLV---FPALNALVSDLAPKEERGTASGLYNTAGS  337

Query  503  FWAAV  507
               A+
Sbjct  338  LGGAL  342



Lambda      K        H        a         alpha
   0.326    0.139    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 696403448


Query= TCONS_00021320

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         271     1e-86


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 271 bits (694),  Expect = 1e-86, Method: Composition-based stats.
 Identities = 138/409 (34%), Positives = 209/409 (51%), Gaps = 25/409 (6%)

Query  7    ALFAGWISDPLNHWLGRKAVIAIAAVFSLVAPI---ACGVTQNWHQLLGCRILLGIGMGL  63
            +LFAG + D      GRK  + IA V  ++  +   A     + +QL+  R+L+GIG+G 
Sbjct  63   SLFAGKLGD----RFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGG  118

Query  64   KEVTVPVFSAETVPTSIRGGLVMSWQVWTAFGIFLGTCANLAVVNTGKI-AWRLQLGSAF  122
              V  P++ +E  P  +RG L   +Q+   FGI L     L +  T     WR+ LG   
Sbjct  119  ASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQL  178

Query  123  IPAVPLLLGIWFCPESPRWLLSKENPRKAYESLLRLRNSPLQAARDLYYIHAQIKMEKRL  182
            +PA+ L++G+ F PESPRWL+ K    +A E L +LR  P     D      +  +E   
Sbjct  179  VPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPD---VDRELDEIKDSLEAGQ  235

Query  183  LRESEFTRGGNTLARFLELFTVPRVRRATQASGIVMIAQQMCGINIIAFYSSTIFEQAGA  242
              E    +         ELF+    R+      ++ I QQ+ GIN I +YS+TIFE  G 
Sbjct  236  EAEKASWK---------ELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGL  286

Query  243  TNIQALLASFGFGLVNFLFAWPAVWTIDTFGRRWLLLATFPNM--CWTLLAAGFCFWIPA  300
            ++  + L +   G+VNF+F + A++ +D FGRR LLL     M  C+ +L       +  
Sbjct  287  SD--SFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSK  344

Query  301  SSSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEVFPLTHREVGMAWAVATNNFWAAVLS  360
            S  A +  I  FI LF  F++ G GPVP+   +E+FPL+ R   MA A A N     ++ 
Sbjct  345  SDWAGIVAIV-FIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIG  403

Query  361  LTFPYMLRDFKPQGAFGFYAGLNIIALLLIFFFLPETKQRSLEELDRVF  409
              FP +         F  +AGL ++ ++ +FFF+PETK R+LEE+D +F
Sbjct  404  FLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.328    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00021321

Length=643
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         272     2e-85
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            63.6    3e-11


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 272 bits (699),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 153/494 (31%), Positives = 235/494 (48%), Gaps = 56/494 (11%)

Query  100  SVAAAIQGWDQTGSNGANLT---FAQQFGIPQDGCVTRAECTRNQWIVGVINAMPYITIA  156
            ++   + G+D TG  GA LT   F + FG+ +      A    +  IV + +   +I  +
Sbjct  6    ALGGFLFGYD-TGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIG-S  63

Query  157  LFAGWISDPLNHWLGRKAVIAIAAVFSLVAPI---ACGVTQNWHQLLGCRILLGIGMGLK  213
            LFAG + D      GRK  + IA V  ++  +   A     + +QL+  R+L+GIG+G  
Sbjct  64   LFAGKLGD----RFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGA  119

Query  214  EVTVPVFSAETVPTSIRGGLVMSWQVCRCSLFPWLILEFGSSSGLTTDNGYPGTAFGIFL  273
             V  P++ +E  P  +RG L   +Q+                             FGI L
Sbjct  120  SVLAPMYISEIAPKKLRGALGSLYQLA--------------------------ITFGILL  153

Query  274  GTCANLAVVNTGKI-AWRLQLGSAFIPAVPLLLGIWFCPESPRWLLSKENPRKAYESLLR  332
                 L +  T     WR+ LG   +PA+ L++G+ F PESPRWL+ K    +A E L +
Sbjct  154  AYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAK  213

Query  333  LRNSPLQAARDLYYIHAQIKMEKRLLRESEFTRGGNTLARFLELFTVPRVRRATQASGIV  392
            LR  P     D      +  +E     E    +         ELF+    R+      ++
Sbjct  214  LRGVPD---VDRELDEIKDSLEAGQEAEKASWK---------ELFSTKTRRQRLLIGVML  261

Query  393  MIAQQMCGINIIAFYSSTIFEQAGATNIQALLASFGFGLVNFLFAWPAVWTIDTFGRRWL  452
             I QQ+ GIN I +YS+TIFE  G ++  + L +   G+VNF+F + A++ +D FGRR L
Sbjct  262  QIFQQLTGINAIFYYSTTIFENLGLSD--SFLVTIIVGVVNFVFTFIAIFLVDRFGRRPL  319

Query  453  LLATFPNM--CWTLLAAGFCFWIPASSSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEV  510
            LL     M  C+ +L       +  S  A +  I  FI LF  F++ G GPVP+   +E+
Sbjct  320  LLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIV-FIALFIAFFAMGWGPVPWVIVSEL  378

Query  511  FPLTHREVGMAWAVATNNFWAAVLSLTFPYMLRDFKPQGAFGFYAGLNIIALLLIFFFLP  570
            FPL+ R   MA A A N     ++   FP +         F  +AGL ++ ++ +FFF+P
Sbjct  379  FPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVP  438

Query  571  ETKQRSLEELDRVF  584
            ETK R+LEE+D +F
Sbjct  439  ETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 63.6 bits (155),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 74/220 (34%), Gaps = 10/220 (5%)

Query  391  IVMIAQQMCGINIIAFYSSTIFEQAGATNIQALLASFGFGLVNFLFAWPAVWTIDTFGRR  450
            +      +    +       + E  G +  +  L    F L   L    A    D FGRR
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRR  62

Query  451  WLLLATFPNMCWTLLAAGFCFWIPASSSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEV  510
             +LL         LL       +   +S+   L+ L + L  +       P      A+ 
Sbjct  63   RVLL-------IGLLLFALGLLLLLFASSLWLLLVLRV-LQGLGAGAL-FPAALALIADW  113

Query  511  FPLTHREVGMAWAVATNNFWAAVLSLTFPYMLRDFKPQGAFGFYAGLNIIALLLIFFFLP  570
            FP   R   +    A     AA+  L    +   F  + AF   A L+++A +L+    P
Sbjct  114  FPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRP  173

Query  571  ETKQRSLEELDRVFSISTRAHAKYQVTEVLPWWIRRYLLG  610
              + +  +  +    +S     K  + + + W +   LL 
Sbjct  174  PPESKRPKPAEEAR-LSLIVAWKALLRDPVLWLLLALLLF  212



Lambda      K        H        a         alpha
   0.325    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 811134500


Query= TCONS_00026499

Length=617
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         287     3e-91
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            68.2    7e-13


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 287 bits (737),  Expect = 3e-91, Method: Composition-based stats.
 Identities = 153/468 (33%), Positives = 234/468 (50%), Gaps = 30/468 (6%)

Query  100  SVAAAIQGWDQTGSNGANLT---FAQQFGIPQDGCVTRAECTRNQWIVGVINAMPYITIA  156
            ++   + G+D TG  GA LT   F + FG+ +      A    +  IV + +   +I  +
Sbjct  6    ALGGFLFGYD-TGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIG-S  63

Query  157  LFAGWISDPLNHWLGRKAVIAIAAVFSLVAPI---ACGVTQNWHQLLGCRILLGIGMGLK  213
            LFAG + D      GRK  + IA V  ++  +   A     + +QL+  R+L+GIG+G  
Sbjct  64   LFAGKLGD----RFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGA  119

Query  214  EVTVPVFSAETVPTSIRGGLVMSWQVWTAFGIFLGTCANLAVVNTGKI-AWRLQLGSAFI  272
             V  P++ +E  P  +RG L   +Q+   FGI L     L +  T     WR+ LG   +
Sbjct  120  SVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLV  179

Query  273  PAVPLLLGIWFCPESPRWLLSKENPRKAYESLLRLRNSPLQAARDLYYIHAQIKMEKRLL  332
            PA+ L++G+ F PESPRWL+ K    +A E L +LR  P     D      +  +E    
Sbjct  180  PALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPD---VDRELDEIKDSLEAGQE  236

Query  333  RESEFTRGGNTLARFLELFTVPRVRRATQASGIVMIAQQMCGINIIAFYSSTIFEQAGAT  392
             E    +         ELF+    R+      ++ I QQ+ GIN I +YS+TIFE  G +
Sbjct  237  AEKASWK---------ELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLS  287

Query  393  NIQALLASFGFGLVNFLFAWPAVWTIDTFGRRWLLLATFPNM--CWTLLAAGFCFWIPAS  450
               + L +   G+VNF+F + A++ +D FGRR LLL     M  C+ +L       +  S
Sbjct  288  --DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKS  345

Query  451  SSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEVFPLTHREVGMAWAVATNNFWAAVLSL  510
              A +  I  FI LF  F++ G GPVP+   +E+FPL+ R   MA A A N     ++  
Sbjct  346  DWAGIVAIV-FIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGF  404

Query  511  TFPYMLRDFKPQGAFGFYAGLNIIALLLIFFFLPETKQRSLEELDRVF  558
             FP +         F  +AGL ++ ++ +FFF+PETK R+LEE+D +F
Sbjct  405  LFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 68.2 bits (167),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 98/365 (27%), Gaps = 58/365 (16%)

Query  143  IVGVINAMPYITIALFAGWISDPLNHWLGRKAVIAIAAVFSLVAPIACGVTQNWHQLLGC  202
            ++  + ++ Y      AG +SD      GR+ V+ I  +   +  +      +   LL  
Sbjct  36   LLLTLFSLGYALAQPLAGRLSDRF----GRRRVLLIGLLLFALGLLLLLFASSLWLLLVL  91

Query  203  RILLGIGMGLKEVTVPVFSAETVPTSIRGGLVMSWQVWTAFGIFLGTCANLAVVNTGKIA  262
            R+L G+G G          A+  P   RG  +         G  LG      +       
Sbjct  92   RVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLA--SLFG  149

Query  263  WRLQLGSAFIPAVPLLLGIWFCPESPRWLLSKENPRKAYESLLRLRNSPLQAARDLYYIH  322
            WR    +  I A+  LL           LL +  P              L          
Sbjct  150  WR---AAFLILAILSLLAAVL------LLLPRPPPESKRPKPAEEARLSL----------  190

Query  323  AQIKMEKRLLRESEFTRGGNTLARFLELFTVPRVRRATQASGIVMIAQQMCGINIIAFYS  382
                                 +  +  L   P +        ++ +         +  Y 
Sbjct  191  ---------------------IVAWKALLRDPVL------WLLLALLLFGFAFFGLLTYL  223

Query  383  STIFEQAGATNIQALLASFGFGLVNFLFAWPAVWTIDTFGRRWLLLATFPNMCWTLLAAG  442
                E  G + + A L     GL+  +         D  GRR  LL         LL   
Sbjct  224  PLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALL-----LLILA  278

Query  443  FCFWIPASSSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEVFPLTHREVGMAWAVATNN  502
                +  S +     + L + L    +      +     +++ P   R           +
Sbjct  279  ALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPAL-NALVSDLAPKEERGTASGLYNTAGS  337

Query  503  FWAAV  507
               A+
Sbjct  338  LGGAL  342


 Score = 63.2 bits (154),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 74/220 (34%), Gaps = 10/220 (5%)

Query  365  IVMIAQQMCGINIIAFYSSTIFEQAGATNIQALLASFGFGLVNFLFAWPAVWTIDTFGRR  424
            +      +    +       + E  G +  +  L    F L   L    A    D FGRR
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRR  62

Query  425  WLLLATFPNMCWTLLAAGFCFWIPASSSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEV  484
             +LL         LL       +   +S+   L+ L + L  +       P      A+ 
Sbjct  63   RVLL-------IGLLLFALGLLLLLFASSLWLLLVLRV-LQGLGAGAL-FPAALALIADW  113

Query  485  FPLTHREVGMAWAVATNNFWAAVLSLTFPYMLRDFKPQGAFGFYAGLNIIALLLIFFFLP  544
            FP   R   +    A     AA+  L    +   F  + AF   A L+++A +L+    P
Sbjct  114  FPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRP  173

Query  545  ETKQRSLEELDRVFSISTRAHAKYQVTEVLPWWIRRYLLG  584
              + +  +  +    +S     K  + + + W +   LL 
Sbjct  174  PPESKRPKPAEEAR-LSLIVAWKALLRDPVLWLLLALLLF  212



Lambda      K        H        a         alpha
   0.325    0.139    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784574700


Query= TCONS_00026500

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         145     1e-40


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 145 bits (368),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 72/220 (33%), Positives = 111/220 (50%), Gaps = 13/220 (6%)

Query  100  SVAAAIQGWDQTGSNGANLT---FAQQFGIPQDGCVTRAECTRNQWIVGVINAMPYITIA  156
            ++   + G+D TG  GA LT   F + FG+ +      A    +  IV + +   +I  +
Sbjct  6    ALGGFLFGYD-TGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIG-S  63

Query  157  LFAGWISDPLNHWLGRKAVIAIAAVFSLVAPI---ACGVTQNWHQLLGCRILLGIGMGLK  213
            LFAG + D      GRK  + IA V  ++  +   A     + +QL+  R+L+GIG+G  
Sbjct  64   LFAGKLGD----RFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGA  119

Query  214  EVTVPVFSAETVPTSIRGGLVMSWQVWTAFGIFLGTCANLAVVNTGKI-AWRLQLGSAFI  272
             V  P++ +E  P  +RG L   +Q+   FGI L     L +  T     WR+ LG   +
Sbjct  120  SVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLV  179

Query  273  PAVPLLLGIWFCPESPRWLLSKENPRKAYESLLRLRNSPL  312
            PA+ L++G+ F PESPRWL+ K    +A E L +LR  P 
Sbjct  180  PALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPD  219



Lambda      K        H        a         alpha
   0.322    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00026501

Length=589
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         281     3e-89
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            64.4    1e-11


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 281 bits (721),  Expect = 3e-89, Method: Composition-based stats.
 Identities = 153/468 (33%), Positives = 234/468 (50%), Gaps = 30/468 (6%)

Query  131  SVAAAIQGWDQTGSNGANLT---FAQQFGIPQDGCVTRAECTRNQWIVGVINAMPYITIA  187
            ++   + G+D TG  GA LT   F + FG+ +      A    +  IV + +   +I  +
Sbjct  6    ALGGFLFGYD-TGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIG-S  63

Query  188  LFAGWISDPLNHWLGRKAVIAIAAVFSLVAPI---ACGVTQNWHQLLGCRILLGIGMGLK  244
            LFAG + D      GRK  + IA V  ++  +   A     + +QL+  R+L+GIG+G  
Sbjct  64   LFAGKLGD----RFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGA  119

Query  245  EVTVPVFSAETVPTSIRGGLVMSWQVWTAFGIFLGTCANLAVVNTGKI-AWRLQLGSAFI  303
             V  P++ +E  P  +RG L   +Q+   FGI L     L +  T     WR+ LG   +
Sbjct  120  SVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLV  179

Query  304  PAVPLLLGIWFCPESPRWLLSKENPRKAYESLLRLRNSPLQAARDLYYIHAQIKMEKRLL  363
            PA+ L++G+ F PESPRWL+ K    +A E L +LR  P     D      +  +E    
Sbjct  180  PALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPD---VDRELDEIKDSLEAGQE  236

Query  364  RESEFTRGGNTLARFLELFTVPRVRRATQASGIVMIAQQMCGINIIAFYSSTIFEQAGAT  423
             E    +         ELF+    R+      ++ I QQ+ GIN I +YS+TIFE  G +
Sbjct  237  AEKASWK---------ELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLS  287

Query  424  NIQALLASFGFGLVNFLFAWPAVWTIDTFGRRWLLLATFPNM--CWTLLAAGFCFWIPAS  481
               + L +   G+VNF+F + A++ +D FGRR LLL     M  C+ +L       +  S
Sbjct  288  --DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKS  345

Query  482  SSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEVFPLTHREVGMAWAVATNNFWAAVLSL  541
              A +  I  FI LF  F++ G GPVP+   +E+FPL+ R   MA A A N     ++  
Sbjct  346  DWAGIVAIV-FIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGF  404

Query  542  TFPYMLRDFKPQGAFGFYAGLNIIALLLIFFFLPETKQRSLEELDRVF  589
             FP +         F  +AGL ++ ++ +FFF+PETK R+LEE+D +F
Sbjct  405  LFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 64.4 bits (157),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 103/365 (28%), Gaps = 58/365 (16%)

Query  174  IVGVINAMPYITIALFAGWISDPLNHWLGRKAVIAIAAVFSLVAPIACGVTQNWHQLLGC  233
            ++  + ++ Y      AG +SD      GR+ V+ I  +   +  +      +   LL  
Sbjct  36   LLLTLFSLGYALAQPLAGRLSDRF----GRRRVLLIGLLLFALGLLLLLFASSLWLLLVL  91

Query  234  RILLGIGMGLKEVTVPVFSAETVPTSIRGGLVMSWQVWTAFGIFLGTCANLAVVNTGKIA  293
            R+L G+G G          A+  P   RG  +         G  LG      +       
Sbjct  92   RVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLA--SLFG  149

Query  294  WRLQLGSAFIPAVPLLLGIWFCPESPRWLLSKENPRKAYESLLRLRNSPLQAARDLYYIH  353
            WR    +  I A+  LL           LL +  P              L          
Sbjct  150  WR---AAFLILAILSLLAAVL------LLLPRPPPESKRPKPAEEARLSL----------  190

Query  354  AQIKMEKRLLRESEFTRGGNTLARFLELFTVPRVRRATQASGIVMIAQQMCGINIIAFYS  413
                                 +  +  L   P +        ++ +         +  Y 
Sbjct  191  ---------------------IVAWKALLRDPVL------WLLLALLLFGFAFFGLLTYL  223

Query  414  STIFEQAGATNIQALLASFGFGLVNFLFAWPAVWTIDTFGRRWLLLATFPNMCWTLLAAG  473
                E  G + + A L     GL+  +         D  GRR  LL     +   +LAA 
Sbjct  224  PLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLL---ILAAL  280

Query  474  FCFWIPASSSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEVFPLTHREVGMAWAVATNN  533
                +  + S+   L+AL +  F         P      +++ P   R           +
Sbjct  281  GLLLLSLTLSSLWLLLALLLLGFGFGLV---FPALNALVSDLAPKEERGTASGLYNTAGS  337

Query  534  FWAAV  538
               A+
Sbjct  338  LGGAL  342



Lambda      K        H        a         alpha
   0.326    0.139    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 742730716


Query= TCONS_00021322

Length=674
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         273     4e-85
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            63.6    3e-11


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 273 bits (700),  Expect = 4e-85, Method: Composition-based stats.
 Identities = 153/494 (31%), Positives = 234/494 (47%), Gaps = 56/494 (11%)

Query  131  SVAAAIQGWDQTGSNGANLT---FAQQFGIPQDGCVTRAECTRNQWIVGVINAMPYITIA  187
            ++   + G+D TG  GA LT   F + FG+ +      A    +  IV + +   +I  +
Sbjct  6    ALGGFLFGYD-TGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIG-S  63

Query  188  LFAGWISDPLNHWLGRKAVIAIAAVFSLVAPI---ACGVTQNWHQLLGCRILLGIGMGLK  244
            LFAG + D      GRK  + IA V  ++  +   A     + +QL+  R+L+GIG+G  
Sbjct  64   LFAGKLGD----RFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGA  119

Query  245  EVTVPVFSAETVPTSIRGGLVMSWQVCRCSLFPWLILEFGSSSGLTTDNGYPGTAFGIFL  304
             V  P++ +E  P  +RG L   +Q+                             FGI L
Sbjct  120  SVLAPMYISEIAPKKLRGALGSLYQLA--------------------------ITFGILL  153

Query  305  GTCANLAVVNTGKI-AWRLQLGSAFIPAVPLLLGIWFCPESPRWLLSKENPRKAYESLLR  363
                 L +  T     WR+ LG   +PA+ L++G+ F PESPRWL+ K    +A E L +
Sbjct  154  AYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAK  213

Query  364  LRNSPLQAARDLYYIHAQIKMEKRLLRESEFTRGGNTLARFLELFTVPRVRRATQASGIV  423
            LR  P     D      +  +E     E    +         ELF+    R+      ++
Sbjct  214  LRGVPD---VDRELDEIKDSLEAGQEAEKASWK---------ELFSTKTRRQRLLIGVML  261

Query  424  MIAQQMCGINIIAFYSSTIFEQAGATNIQALLASFGFGLVNFLFAWPAVWTIDTFGRRWL  483
             I QQ+ GIN I +YS+TIFE  G +   + L +   G+VNF+F + A++ +D FGRR L
Sbjct  262  QIFQQLTGINAIFYYSTTIFENLGLS--DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPL  319

Query  484  LLATFPNM--CWTLLAAGFCFWIPASSSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEV  541
            LL     M  C+ +L       +  S  A +  I  FI LF  F++ G GPVP+   +E+
Sbjct  320  LLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIV-FIALFIAFFAMGWGPVPWVIVSEL  378

Query  542  FPLTHREVGMAWAVATNNFWAAVLSLTFPYMLRDFKPQGAFGFYAGLNIIALLLIFFFLP  601
            FPL+ R   MA A A N     ++   FP +         F  +AGL ++ ++ +FFF+P
Sbjct  379  FPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVP  438

Query  602  ETKQRSLEELDRVF  615
            ETK R+LEE+D +F
Sbjct  439  ETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 63.6 bits (155),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 74/220 (34%), Gaps = 10/220 (5%)

Query  422  IVMIAQQMCGINIIAFYSSTIFEQAGATNIQALLASFGFGLVNFLFAWPAVWTIDTFGRR  481
            +      +    +       + E  G +  +  L    F L   L    A    D FGRR
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRR  62

Query  482  WLLLATFPNMCWTLLAAGFCFWIPASSSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEV  541
             +LL         LL       +   +S+   L+ L + L  +       P      A+ 
Sbjct  63   RVLL-------IGLLLFALGLLLLLFASSLWLLLVLRV-LQGLGAGAL-FPAALALIADW  113

Query  542  FPLTHREVGMAWAVATNNFWAAVLSLTFPYMLRDFKPQGAFGFYAGLNIIALLLIFFFLP  601
            FP   R   +    A     AA+  L    +   F  + AF   A L+++A +L+    P
Sbjct  114  FPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRP  173

Query  602  ETKQRSLEELDRVFSISTRAHAKYQVTEVLPWWIRRYLLG  641
              + +  +  +    +S     K  + + + W +   LL 
Sbjct  174  PPESKRPKPAEEAR-LSLIVAWKALLRDPVLWLLLALLLF  212



Lambda      K        H        a         alpha
   0.325    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 856852990


Query= TCONS_00026502

Length=624
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         288     2e-91
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            69.0    4e-13


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 288 bits (739),  Expect = 2e-91, Method: Composition-based stats.
 Identities = 153/468 (33%), Positives = 234/468 (50%), Gaps = 30/468 (6%)

Query  107  SVAAAIQGWDQTGSNGANLT---FAQQFGIPQDGCVTRAECTRNQWIVGVINAMPYITIA  163
            ++   + G+D TG  GA LT   F + FG+ +      A    +  IV + +   +I  +
Sbjct  6    ALGGFLFGYD-TGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIG-S  63

Query  164  LFAGWISDPLNHWLGRKAVIAIAAVFSLVAPI---ACGVTQNWHQLLGCRILLGIGMGLK  220
            LFAG + D      GRK  + IA V  ++  +   A     + +QL+  R+L+GIG+G  
Sbjct  64   LFAGKLGD----RFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGA  119

Query  221  EVTVPVFSAETVPTSIRGGLVMSWQVWTAFGIFLGTCANLAVVNTGKI-AWRLQLGSAFI  279
             V  P++ +E  P  +RG L   +Q+   FGI L     L +  T     WR+ LG   +
Sbjct  120  SVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLV  179

Query  280  PAVPLLLGIWFCPESPRWLLSKENPRKAYESLLRLRNSPLQAARDLYYIHAQIKMEKRLL  339
            PA+ L++G+ F PESPRWL+ K    +A E L +LR  P     D      +  +E    
Sbjct  180  PALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPD---VDRELDEIKDSLEAGQE  236

Query  340  RESEFTRGGNTLARFLELFTVPRVRRATQASGIVMIAQQMCGINIIAFYSSTIFEQAGAT  399
             E    +         ELF+    R+      ++ I QQ+ GIN I +YS+TIFE  G +
Sbjct  237  AEKASWK---------ELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLS  287

Query  400  NIQALLASFGFGLVNFLFAWPAVWTIDTFGRRWLLLATFPNM--CWTLLAAGFCFWIPAS  457
               + L +   G+VNF+F + A++ +D FGRR LLL     M  C+ +L       +  S
Sbjct  288  --DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKS  345

Query  458  SSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEVFPLTHREVGMAWAVATNNFWAAVLSL  517
              A +  I  FI LF  F++ G GPVP+   +E+FPL+ R   MA A A N     ++  
Sbjct  346  DWAGIVAIV-FIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGF  404

Query  518  TFPYMLRDFKPQGAFGFYAGLNIIALLLIFFFLPETKQRSLEELDRVF  565
             FP +         F  +AGL ++ ++ +FFF+PETK R+LEE+D +F
Sbjct  405  LFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 69.0 bits (169),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 98/365 (27%), Gaps = 58/365 (16%)

Query  150  IVGVINAMPYITIALFAGWISDPLNHWLGRKAVIAIAAVFSLVAPIACGVTQNWHQLLGC  209
            ++  + ++ Y      AG +SD      GR+ V+ I  +   +  +      +   LL  
Sbjct  36   LLLTLFSLGYALAQPLAGRLSDRF----GRRRVLLIGLLLFALGLLLLLFASSLWLLLVL  91

Query  210  RILLGIGMGLKEVTVPVFSAETVPTSIRGGLVMSWQVWTAFGIFLGTCANLAVVNTGKIA  269
            R+L G+G G          A+  P   RG  +         G  LG      +       
Sbjct  92   RVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLA--SLFG  149

Query  270  WRLQLGSAFIPAVPLLLGIWFCPESPRWLLSKENPRKAYESLLRLRNSPLQAARDLYYIH  329
            WR    +  I A+  LL           LL +  P              L          
Sbjct  150  WR---AAFLILAILSLLAAVL------LLLPRPPPESKRPKPAEEARLSL----------  190

Query  330  AQIKMEKRLLRESEFTRGGNTLARFLELFTVPRVRRATQASGIVMIAQQMCGINIIAFYS  389
                                 +  +  L   P +        ++ +         +  Y 
Sbjct  191  ---------------------IVAWKALLRDPVL------WLLLALLLFGFAFFGLLTYL  223

Query  390  STIFEQAGATNIQALLASFGFGLVNFLFAWPAVWTIDTFGRRWLLLATFPNMCWTLLAAG  449
                E  G + + A L     GL+  +         D  GRR  LL         LL   
Sbjct  224  PLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALL-----LLILA  278

Query  450  FCFWIPASSSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEVFPLTHREVGMAWAVATNN  509
                +  S +     + L + L    +      +     +++ P   R           +
Sbjct  279  ALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPAL-NALVSDLAPKEERGTASGLYNTAGS  337

Query  510  FWAAV  514
               A+
Sbjct  338  LGGAL  342


 Score = 64.0 bits (156),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 74/220 (34%), Gaps = 10/220 (5%)

Query  372  IVMIAQQMCGINIIAFYSSTIFEQAGATNIQALLASFGFGLVNFLFAWPAVWTIDTFGRR  431
            +      +    +       + E  G +  +  L    F L   L    A    D FGRR
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRR  62

Query  432  WLLLATFPNMCWTLLAAGFCFWIPASSSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEV  491
             +LL         LL       +   +S+   L+ L + L  +       P      A+ 
Sbjct  63   RVLL-------IGLLLFALGLLLLLFASSLWLLLVLRV-LQGLGAGAL-FPAALALIADW  113

Query  492  FPLTHREVGMAWAVATNNFWAAVLSLTFPYMLRDFKPQGAFGFYAGLNIIALLLIFFFLP  551
            FP   R   +    A     AA+  L    +   F  + AF   A L+++A +L+    P
Sbjct  114  FPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRP  173

Query  552  ETKQRSLEELDRVFSISTRAHAKYQVTEVLPWWIRRYLLG  591
              + +  +  +    +S     K  + + + W +   LL 
Sbjct  174  PPESKRPKPAEEAR-LSLIVAWKALLRDPVLWLLLALLLF  212



Lambda      K        H        a         alpha
   0.325    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 795035696


Query= TCONS_00021323

Length=650
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         274     1e-85
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            64.0    2e-11


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 274 bits (702),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 153/494 (31%), Positives = 234/494 (47%), Gaps = 56/494 (11%)

Query  107  SVAAAIQGWDQTGSNGANLT---FAQQFGIPQDGCVTRAECTRNQWIVGVINAMPYITIA  163
            ++   + G+D TG  GA LT   F + FG+ +      A    +  IV + +   +I  +
Sbjct  6    ALGGFLFGYD-TGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIG-S  63

Query  164  LFAGWISDPLNHWLGRKAVIAIAAVFSLVAPI---ACGVTQNWHQLLGCRILLGIGMGLK  220
            LFAG + D      GRK  + IA V  ++  +   A     + +QL+  R+L+GIG+G  
Sbjct  64   LFAGKLGD----RFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGA  119

Query  221  EVTVPVFSAETVPTSIRGGLVMSWQVCRCSLFPWLILEFGSSSGLTTDNGYPGTAFGIFL  280
             V  P++ +E  P  +RG L   +Q+                             FGI L
Sbjct  120  SVLAPMYISEIAPKKLRGALGSLYQLA--------------------------ITFGILL  153

Query  281  GTCANLAVVNTGKI-AWRLQLGSAFIPAVPLLLGIWFCPESPRWLLSKENPRKAYESLLR  339
                 L +  T     WR+ LG   +PA+ L++G+ F PESPRWL+ K    +A E L +
Sbjct  154  AYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAK  213

Query  340  LRNSPLQAARDLYYIHAQIKMEKRLLRESEFTRGGNTLARFLELFTVPRVRRATQASGIV  399
            LR  P     D      +  +E     E    +         ELF+    R+      ++
Sbjct  214  LRGVPD---VDRELDEIKDSLEAGQEAEKASWK---------ELFSTKTRRQRLLIGVML  261

Query  400  MIAQQMCGINIIAFYSSTIFEQAGATNIQALLASFGFGLVNFLFAWPAVWTIDTFGRRWL  459
             I QQ+ GIN I +YS+TIFE  G +   + L +   G+VNF+F + A++ +D FGRR L
Sbjct  262  QIFQQLTGINAIFYYSTTIFENLGLS--DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPL  319

Query  460  LLATFPNM--CWTLLAAGFCFWIPASSSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEV  517
            LL     M  C+ +L       +  S  A +  I  FI LF  F++ G GPVP+   +E+
Sbjct  320  LLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIV-FIALFIAFFAMGWGPVPWVIVSEL  378

Query  518  FPLTHREVGMAWAVATNNFWAAVLSLTFPYMLRDFKPQGAFGFYAGLNIIALLLIFFFLP  577
            FPL+ R   MA A A N     ++   FP +         F  +AGL ++ ++ +FFF+P
Sbjct  379  FPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVP  438

Query  578  ETKQRSLEELDRVF  591
            ETK R+LEE+D +F
Sbjct  439  ETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 64.0 bits (156),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 74/220 (34%), Gaps = 10/220 (5%)

Query  398  IVMIAQQMCGINIIAFYSSTIFEQAGATNIQALLASFGFGLVNFLFAWPAVWTIDTFGRR  457
            +      +    +       + E  G +  +  L    F L   L    A    D FGRR
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRR  62

Query  458  WLLLATFPNMCWTLLAAGFCFWIPASSSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEV  517
             +LL         LL       +   +S+   L+ L + L  +       P      A+ 
Sbjct  63   RVLL-------IGLLLFALGLLLLLFASSLWLLLVLRV-LQGLGAGAL-FPAALALIADW  113

Query  518  FPLTHREVGMAWAVATNNFWAAVLSLTFPYMLRDFKPQGAFGFYAGLNIIALLLIFFFLP  577
            FP   R   +    A     AA+  L    +   F  + AF   A L+++A +L+    P
Sbjct  114  FPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRP  173

Query  578  ETKQRSLEELDRVFSISTRAHAKYQVTEVLPWWIRRYLLG  617
              + +  +  +    +S     K  + + + W +   LL 
Sbjct  174  PPESKRPKPAEEAR-LSLIVAWKALLRDPVLWLLLALLLF  212



Lambda      K        H        a         alpha
   0.325    0.139    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0778    0.140     1.90     42.6     43.6 

Effective search space used: 821458030


Query= TCONS_00021324

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         142     4e-39


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 142 bits (360),  Expect = 4e-39, Method: Composition-based stats.
 Identities = 72/220 (33%), Positives = 111/220 (50%), Gaps = 13/220 (6%)

Query  93   SVAAAIQGWDQTGSNGANLT---FAQQFGIPQDGCVTRAECTRNQWIVGVINAMPYITIA  149
            ++   + G+D TG  GA LT   F + FG+ +      A    +  IV + +   +I  +
Sbjct  6    ALGGFLFGYD-TGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIG-S  63

Query  150  LFAGWISDPLNHWLGRKAVIAIAAVFSLVAPI---ACGVTQNWHQLLGCRILLGIGMGLK  206
            LFAG + D      GRK  + IA V  ++  +   A     + +QL+  R+L+GIG+G  
Sbjct  64   LFAGKLGD----RFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGA  119

Query  207  EVTVPVFSAETVPTSIRGGLVMSWQVWTAFGIFLGTCANLAVVNTGKI-AWRLQLGSAFI  265
             V  P++ +E  P  +RG L   +Q+   FGI L     L +  T     WR+ LG   +
Sbjct  120  SVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLV  179

Query  266  PAVPLLLGIWFCPESPRWLLSKENPRKAYESLLRLRNSPL  305
            PA+ L++G+ F PESPRWL+ K    +A E L +LR  P 
Sbjct  180  PALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPD  219



Lambda      K        H        a         alpha
   0.323    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00021325

Length=434
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         222     2e-68


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 222 bits (568),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 179/378 (47%), Gaps = 44/378 (12%)

Query  1    MGLKEVTVPVFSAETVPTSIRGGLVMSWQVCRCSLFPWLILEFGSSSGLTTDNGYPGTAF  60
            +G   V  P++ +E  P  +RG L   +Q+                             F
Sbjct  116  VGGASVLAPMYISEIAPKKLRGALGSLYQLA--------------------------ITF  149

Query  61   GIFLGTCANLAVVNTGKI-AWRLQLGSAFIPAVPLLLGIWFCPESPRWLLSKENPRKAYE  119
            GI L     L +  T     WR+ LG   +PA+ L++G+ F PESPRWL+ K    +A E
Sbjct  150  GILLAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEARE  209

Query  120  SLLRLRNSPLQAARDLYYIHAQIKMEKRLLRESEFTRGGNTLARFLELFTVPRVRRATQA  179
             L +LR  P     D      +  +E     E    +         ELF+    R+    
Sbjct  210  VLAKLRGVPD---VDRELDEIKDSLEAGQEAEKASWK---------ELFSTKTRRQRLLI  257

Query  180  SGIVMIAQQMCGINIIAFYSSTIFEQAGATNIQALLASFGFGLVNFLFAWPAVWTIDTFG  239
              ++ I QQ+ GIN I +YS+TIFE  G ++  + L +   G+VNF+F + A++ +D FG
Sbjct  258  GVMLQIFQQLTGINAIFYYSTTIFENLGLSD--SFLVTIIVGVVNFVFTFIAIFLVDRFG  315

Query  240  RRWLLLATFPNM--CWTLLAAGFCFWIPASSSAHLGLIALFIYLFNIFYSPGEGPVPFTY  297
            RR LLL     M  C+ +L       +  S  A +  I  FI LF  F++ G GPVP+  
Sbjct  316  RRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIV-FIALFIAFFAMGWGPVPWVI  374

Query  298  SAEVFPLTHREVGMAWAVATNNFWAAVLSLTFPYMLRDFKPQGAFGFYAGLNIIALLLIF  357
             +E+FPL+ R   MA A A N     ++   FP +         F  +AGL ++ ++ +F
Sbjct  375  VSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVF  434

Query  358  FFLPETKQRSLEELDRVF  375
            FF+PETK R+LEE+D +F
Sbjct  435  FFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.327    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 527594176


Query= TCONS_00021326

Length=617
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         287     3e-91
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            68.2    7e-13


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 287 bits (737),  Expect = 3e-91, Method: Composition-based stats.
 Identities = 153/468 (33%), Positives = 234/468 (50%), Gaps = 30/468 (6%)

Query  100  SVAAAIQGWDQTGSNGANLT---FAQQFGIPQDGCVTRAECTRNQWIVGVINAMPYITIA  156
            ++   + G+D TG  GA LT   F + FG+ +      A    +  IV + +   +I  +
Sbjct  6    ALGGFLFGYD-TGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIG-S  63

Query  157  LFAGWISDPLNHWLGRKAVIAIAAVFSLVAPI---ACGVTQNWHQLLGCRILLGIGMGLK  213
            LFAG + D      GRK  + IA V  ++  +   A     + +QL+  R+L+GIG+G  
Sbjct  64   LFAGKLGD----RFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGA  119

Query  214  EVTVPVFSAETVPTSIRGGLVMSWQVWTAFGIFLGTCANLAVVNTGKI-AWRLQLGSAFI  272
             V  P++ +E  P  +RG L   +Q+   FGI L     L +  T     WR+ LG   +
Sbjct  120  SVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLV  179

Query  273  PAVPLLLGIWFCPESPRWLLSKENPRKAYESLLRLRNSPLQAARDLYYIHAQIKMEKRLL  332
            PA+ L++G+ F PESPRWL+ K    +A E L +LR  P     D      +  +E    
Sbjct  180  PALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPD---VDRELDEIKDSLEAGQE  236

Query  333  RESEFTRGGNTLARFLELFTVPRVRRATQASGIVMIAQQMCGINIIAFYSSTIFEQAGAT  392
             E    +         ELF+    R+      ++ I QQ+ GIN I +YS+TIFE  G +
Sbjct  237  AEKASWK---------ELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLS  287

Query  393  NIQALLASFGFGLVNFLFAWPAVWTIDTFGRRWLLLATFPNM--CWTLLAAGFCFWIPAS  450
               + L +   G+VNF+F + A++ +D FGRR LLL     M  C+ +L       +  S
Sbjct  288  --DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKS  345

Query  451  SSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEVFPLTHREVGMAWAVATNNFWAAVLSL  510
              A +  I  FI LF  F++ G GPVP+   +E+FPL+ R   MA A A N     ++  
Sbjct  346  DWAGIVAIV-FIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGF  404

Query  511  TFPYMLRDFKPQGAFGFYAGLNIIALLLIFFFLPETKQRSLEELDRVF  558
             FP +         F  +AGL ++ ++ +FFF+PETK R+LEE+D +F
Sbjct  405  LFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 68.2 bits (167),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 98/365 (27%), Gaps = 58/365 (16%)

Query  143  IVGVINAMPYITIALFAGWISDPLNHWLGRKAVIAIAAVFSLVAPIACGVTQNWHQLLGC  202
            ++  + ++ Y      AG +SD      GR+ V+ I  +   +  +      +   LL  
Sbjct  36   LLLTLFSLGYALAQPLAGRLSDRF----GRRRVLLIGLLLFALGLLLLLFASSLWLLLVL  91

Query  203  RILLGIGMGLKEVTVPVFSAETVPTSIRGGLVMSWQVWTAFGIFLGTCANLAVVNTGKIA  262
            R+L G+G G          A+  P   RG  +         G  LG      +       
Sbjct  92   RVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLA--SLFG  149

Query  263  WRLQLGSAFIPAVPLLLGIWFCPESPRWLLSKENPRKAYESLLRLRNSPLQAARDLYYIH  322
            WR    +  I A+  LL           LL +  P              L          
Sbjct  150  WR---AAFLILAILSLLAAVL------LLLPRPPPESKRPKPAEEARLSL----------  190

Query  323  AQIKMEKRLLRESEFTRGGNTLARFLELFTVPRVRRATQASGIVMIAQQMCGINIIAFYS  382
                                 +  +  L   P +        ++ +         +  Y 
Sbjct  191  ---------------------IVAWKALLRDPVL------WLLLALLLFGFAFFGLLTYL  223

Query  383  STIFEQAGATNIQALLASFGFGLVNFLFAWPAVWTIDTFGRRWLLLATFPNMCWTLLAAG  442
                E  G + + A L     GL+  +         D  GRR  LL         LL   
Sbjct  224  PLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALL-----LLILA  278

Query  443  FCFWIPASSSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEVFPLTHREVGMAWAVATNN  502
                +  S +     + L + L    +      +     +++ P   R           +
Sbjct  279  ALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPAL-NALVSDLAPKEERGTASGLYNTAGS  337

Query  503  FWAAV  507
               A+
Sbjct  338  LGGAL  342


 Score = 63.2 bits (154),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 74/220 (34%), Gaps = 10/220 (5%)

Query  365  IVMIAQQMCGINIIAFYSSTIFEQAGATNIQALLASFGFGLVNFLFAWPAVWTIDTFGRR  424
            +      +    +       + E  G +  +  L    F L   L    A    D FGRR
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRR  62

Query  425  WLLLATFPNMCWTLLAAGFCFWIPASSSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEV  484
             +LL         LL       +   +S+   L+ L + L  +       P      A+ 
Sbjct  63   RVLL-------IGLLLFALGLLLLLFASSLWLLLVLRV-LQGLGAGAL-FPAALALIADW  113

Query  485  FPLTHREVGMAWAVATNNFWAAVLSLTFPYMLRDFKPQGAFGFYAGLNIIALLLIFFFLP  544
            FP   R   +    A     AA+  L    +   F  + AF   A L+++A +L+    P
Sbjct  114  FPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRP  173

Query  545  ETKQRSLEELDRVFSISTRAHAKYQVTEVLPWWIRRYLLG  584
              + +  +  +    +S     K  + + + W +   LL 
Sbjct  174  PPESKRPKPAEEAR-LSLIVAWKALLRDPVLWLLLALLLF  212



Lambda      K        H        a         alpha
   0.325    0.139    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784574700


Query= TCONS_00021328

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         220     6e-67


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 220 bits (563),  Expect = 6e-67, Method: Composition-based stats.
 Identities = 127/397 (32%), Positives = 194/397 (49%), Gaps = 30/397 (8%)

Query  100  SVAAAIQGWDQTGSNGANLT---FAQQFGIPQDGCVTRAECTRNQWIVGVINAMPYITIA  156
            ++   + G+D TG  GA LT   F + FG+ +      A    +  IV + +   +I  +
Sbjct  6    ALGGFLFGYD-TGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIG-S  63

Query  157  LFAGWISDPLNHWLGRKAVIAIAAVFSLVAPI---ACGVTQNWHQLLGCRILLGIGMGLK  213
            LFAG + D      GRK  + IA V  ++  +   A     + +QL+  R+L+GIG+G  
Sbjct  64   LFAGKLGD----RFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGA  119

Query  214  EVTVPVFSAETVPTSIRGGLVMSWQVWTAFGIFLGTCANLAVVNTGKI-AWRLQLGSAFI  272
             V  P++ +E  P  +RG L   +Q+   FGI L     L +  T     WR+ LG   +
Sbjct  120  SVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLV  179

Query  273  PAVPLLLGIWFCPESPRWLLSKENPRKAYESLLRLRNSPLQAARDLYYIHAQIKMEKRLL  332
            PA+ L++G+ F PESPRWL+ K    +A E L +LR  P     D      +  +E    
Sbjct  180  PALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPD---VDRELDEIKDSLEAGQE  236

Query  333  RESEFTRGGNTLARFLELFTVPRVRRATQASGIVMIAQQMCGSNIIAFYSSTIFEQAGAT  392
             E    +         ELF+    R+      ++ I QQ+ G N I +YS+TIFE  G +
Sbjct  237  AEKASWK---------ELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLS  287

Query  393  NIQALLASFGFGLVNFLFAWPAVWTIDTFGRRWLLLATFPNM--CWTLLAAGFCFWIPAS  450
               + L +   G+VNF+F + A++ +D FGRR LLL     M  C+ +L       +  S
Sbjct  288  --DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKS  345

Query  451  SSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEVFPL  487
              A +  I  FI LF  F++ G GPVP+   +E+FPL
Sbjct  346  DWAGIVAIV-FIALFIAFFAMGWGPVPWVIVSELFPL  381



Lambda      K        H        a         alpha
   0.325    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00021330

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00021331

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00026503

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.149    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00021332

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00021333

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00021334

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00026504

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00021335

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00021338

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00026505

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00021339

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00021340

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00021341

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00026506

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00026507

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00026508

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00021342

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00021343

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00021344

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00026509

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00021347

Length=459


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00021348

Length=388


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.122    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00026511

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.113    0.302    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00026512

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00021349

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397037 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, N...  127     1e-36
CDD:395588 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-t...  72.6    7e-17


>CDD:397037 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding 
domain.  This family also includes lambda crystallin.
Length=180

 Score = 127 bits (321),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 89/178 (50%), Gaps = 9/178 (5%)

Query  16   VAVIGGGVLGRRLCMMWAAAGHSVQLYEKSPEVASSAIKYINDAMPEQCTK-LGTEP---  71
            VAVIG G +G  +  ++A AG  V L + S E    A++ I  ++     K   TE    
Sbjct  2    VAVIGAGTMGAGIAQVFALAGLEVVLVDISEEALEKALERIESSLERLVEKGRITEEEVD  61

Query  72   ---GSVFLATSLQDAVQNAWMVIEAIPEILPLKIELFGHLDQLAPPDCILATNSSSYKSS  128
                 +   T L  AV +A +VIEA+PE L LK +LF  LD +APPD ILATN+SS   +
Sbjct  62   AALARISFTTDLAAAV-DADLVIEAVPENLELKRKLFAELDAIAPPDAILATNTSSLSIT  120

Query  129  EMIQQVTRRYRVCNGHYYMPPDQNHL-EIMTCGYTDPSIIAFLMEQSAAAGFVPIHAK  185
            E+     R  R    H++ PP    L E++    T P  +A  +E +   G  P+  K
Sbjct  121  ELAAATKRPERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATTVELAKKIGKTPVVVK  178


>CDD:395588 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal 
domain.  This family also includes lambda crystallin. Some 
proteins include two copies of this domain.
Length=97

 Score = 72.6 bits (179),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query  190  GLIFNRIWAAIKRESLLVMAEGVGTAGDIDRLFKGWFHGEVGPCEMMDRVGLDTVYNIEK  249
            G + NR+ A    E++ ++ EGV T  DID   +      +GP E+ D VGLD  Y+I +
Sbjct  1    GFVVNRLLAPYLNEAIRLVEEGVATPEDIDAAMRLGLGLPMGPFELSDLVGLDVGYHILE  60

Query  250  HYVEERGLDA-KPIEWLKENYVDRGLLGRKSGKG  282
               EE G  A +P   L++  V+ G LGRK+GKG
Sbjct  61   VLAEEFGDRAYRPPPLLEK-LVEAGRLGRKTGKG  93



Lambda      K        H        a         alpha
   0.319    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00021350

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367570 pfam03583, LIP, Secretory lipase. These lipases are ex...  62.8    2e-11


>CDD:367570 pfam03583, LIP, Secretory lipase.  These lipases are expressed 
and secreted during the infection cycle of these pathogens. 
In particular, C. albicans has a large number of different 
lipases, possibly reflecting broad lipolytic activity, which 
may contribute to the persistence and virulence of C. albicans 
in human tissue.
Length=286

 Score = 62.8 bits (153),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 64/283 (23%), Positives = 94/283 (33%), Gaps = 43/283 (15%)

Query  159  ALAEAGYAVVAPDYAGLGVDVSWDGSHIPHQYFVREAGAHDALNARSAARGSFP-HHLSS  217
             L   GY VV PDY G               + V     +  L++  AA  S     ++S
Sbjct  21   PLLLQGYYVVVPDYEGPK-----------STFTVGRQSGYAVLDSIRAALKSGDSTGINS  69

Query  218  DY-VVM-GHSQGGGVAWGLSEILARNHTDNQFEDVGKGYRGAVLAAPPTDALSFTS----  271
            D  V + G+S GG +A G +  L  ++      ++     GA L     +  +       
Sbjct  70   DAKVGLWGYS-GGSLASGWAAELQPSYA----PELQ--LVGAALGGFAANLTATAEAVDG  122

Query  272  ---AGFLAWIAKDLNQIYQSFNLSDWFTPLAVSRIELLDQIEGSQMVTFA---------M  319
               AG +A     L   Y  F  S  +     S  E L +   S+M             M
Sbjct  123  TVFAGLIALALNGLANEYPDFK-SILYEETNDSGREALKK--LSEMCLADALIGYPGDSM  179

Query  320  FSPEEAVLQPGWH--ETWYAKAFEQLTNPGKRPFKG-PILLVQGTEDQIVSYSSTKATMQ  376
            F+ +  V + GW   +        +     K      P+ +  G  D+I+     K   Q
Sbjct  180  FTGDNRVFESGWDILKDETISKTIEDNLLSKSAVPQIPVFIYHGVIDEIIPIKDIKKLYQ  239

Query  377  ETCKRYPGDLELLAVPQASHFAAINAAKQTLLRWIEDRFEHRP  419
              C      LE        HFA         L WI DRF  +P
Sbjct  240  NWCDGGISSLEFAEDLSNGHFAETFVGAPAALTWITDRFSGKP  282



Lambda      K        H        a         alpha
   0.317    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00021351

Length=530


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 664674974


Query= TCONS_00021352

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00021353

Length=457


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 562869368


Query= TCONS_00021355

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00021354

Length=457


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 562869368


Query= TCONS_00021356

Length=457


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 562869368


Query= TCONS_00021360

Length=316


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00026514

Length=457


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 562869368


Query= TCONS_00026513

Length=426


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0745    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00021357

Length=314


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00021358

Length=431


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00026515

Length=426


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00026516

Length=316


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00021359

Length=575


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 721808724


Query= TCONS_00021361

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00021363

Length=497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  140     6e-37


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 140 bits (354),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 74/220 (34%), Positives = 110/220 (50%), Gaps = 22/220 (10%)

Query  272  DLALASELLDHLVAGHETSGITFVYMMWELSKRPRLQAELRQELLTLSPSLRYPLVELGD  331
            D  L + +L+   AG +T+  T  + ++EL+K P +Q +LR+E+  +          +GD
Sbjct  259  DEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEV----------IGD  308

Query  332  GSLPLLPSPAAIDSLPLLDAVVRETLRVHSPAPAPLPRITPSSSEGIAIEGYDRIPGGVK  391
               P   +   + ++P LDAV++ETLR+H   P  LPR     ++   I GY  IP G  
Sbjct  309  KRSP---TYDDLQNMPYLDAVIKETLRLHPVVPLLLPREV---TKDTVIPGYL-IPKGTL  361

Query  392  VSSSSYTLHRISEVYPQPFEWLPERWLDPGPGKIHDMRRLFWPFGSGGRMCLGSNFALQE  451
            V  + Y LHR  EV+P P E+ PER+LD            F PFG+G R CLG   A  E
Sbjct  362  VIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFA--FLPFGAGPRNCLGERLARME  419

Query  452  IKLVMAAVYSNY---TTSIVDDEGIEQDYAFISLPKGRKL  488
            +KL +A +  N+        D   I++    +  PK  KL
Sbjct  420  MKLFLATLLQNFEVELPPGTDPPDIDETPGLLLPPKPYKL  459



Lambda      K        H        a         alpha
   0.321    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 614710796


Query= TCONS_00021362

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  126     2e-32


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 126 bits (319),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 63/177 (36%), Positives = 92/177 (52%), Gaps = 19/177 (11%)

Query  272  DLALASELLDHLVAGHETSGITFVYMMWELSKRPRLQAELRQELLTLSPSLRYPLVELGD  331
            D  L + +L+   AG +T+  T  + ++EL+K P +Q +LR+E+  +          +GD
Sbjct  259  DEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEV----------IGD  308

Query  332  GSLPLLPSPAAIDSLPLLDAVVRETLRVHSPAPAPLPRITPSSSEGIAIEGYDRIPGGVK  391
               P   +   + ++P LDAV++ETLR+H   P  LPR     ++   I GY  IP G  
Sbjct  309  KRSP---TYDDLQNMPYLDAVIKETLRLHPVVPLLLPREV---TKDTVIPGYL-IPKGTL  361

Query  392  VSSSSYTLHRISEVYPQPFEWLPERWLDPGPGKIHDMRRLFWPFGSGGRMCLGSNFA  448
            V  + Y LHR  EV+P P E+ PER+LD            F PFG+G R CLG   A
Sbjct  362  VIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFA--FLPFGAGPRNCLGERLA  416



Lambda      K        H        a         alpha
   0.321    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581273816


Query= TCONS_00021364

Length=432


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00021365

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00021367

Length=580
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  215     3e-64


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 215 bits (551),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 127/473 (27%), Positives = 201/473 (42%), Gaps = 33/473 (7%)

Query  102  PGPKGLPVIGNFFEVYPDHL--GNHQRLFEQYGPIFKTTNMGRTVYHT-NDPQLSSIIF-  157
            PGP  LP+ GN  ++           +L ++YGPIF    +G       + P+    +  
Sbjct  2    PGPPPLPLFGNLLQLGRKGNLHSVFTKLQKKYGPIF-RLYLGPKPVVVLSGPEAVKEVLI  60

Query  158  AETDFFTKKINAAHPLHPIKNQEAGVFLGD----TDTPEWRTAHKFLPPALGPKAVRHYA  213
             + + F     +  P  P      G FLG      + P WR   +FL P         + 
Sbjct  61   KKGEEF-----SGRPDEPWFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGKLSFE  115

Query  214  PMMQETVEDAFTVFDALDERGEAWNVYQYMLKLGSQAVGKLVLGIDFKHFSSIDEP-PHE  272
            P ++E   D               ++   + +     +  ++ G   + F S+++P   E
Sbjct  116  PRVEEEARDLVEKLRKTAGEPGVIDITDLLFRAALNVICSILFG---ERFGSLEDPKFLE  172

Query  273  LVYRIAE-SLELNKKVTAWGD---WYAKLPFGDPQRLRNARGRIIEMVNESIQNAARGGI  328
            LV  + E S  L+       D        P    ++L+ AR +I +++++ I+       
Sbjct  173  LVKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDLLDKLIEE-----R  227

Query  329  EDLPLQDAALKASNMVDYALRATDN-KGEKLPKTSLMQALVVATGAGFTTTSSLLSWLIY  387
             +  L  A     + +D  L A +   G KL    L   ++    AG  TTSS LSW +Y
Sbjct  228  RE-TLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALY  286

Query  388  GLVTYPGVQERLLQELIDNGIDADTQLTADLTDRLTFLDKFIKETQRRHNPSYQP-GRTA  446
             L  +P VQE+L +E ID  I      T D    + +LD  IKET R H        R  
Sbjct  287  ELAKHPEVQEKLREE-IDEVIGDKRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREV  345

Query  447  KVDMILPGGYKLPQDSVVIGALHHLHNNPDVWSNPARFDPDRWDTEEVKNRHKTAYIPFA  506
              D ++PG Y +P+ ++VI  L+ LH +P+V+ NP  FDP+R+  E  K R   A++PF 
Sbjct  346  TKDTVIPG-YLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFG  404

Query  507  TGPRMCIGFNFALQEVKVFLPKLVYRYKFTRENDGHIE-YDPMFQLIRPTNLY  558
             GPR C+G   A  E+K+FL  L+  ++            D    L+ P   Y
Sbjct  405  AGPRNCLGERLARMEMKLFLATLLQNFEVELPPGTDPPDIDETPGLLLPPKPY  457



Lambda      K        H        a         alpha
   0.319    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 729280864


Query= TCONS_00021366

Length=562
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  215     2e-64


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 215 bits (551),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 123/449 (27%), Positives = 196/449 (44%), Gaps = 32/449 (7%)

Query  84   PGPKGLPVIGNFFEVYPDHL--GNHQRLFEQYGPIFKTTNMGRTVYHT-NDPQLSSIIF-  139
            PGP  LP+ GN  ++           +L ++YGPIF    +G       + P+    +  
Sbjct  2    PGPPPLPLFGNLLQLGRKGNLHSVFTKLQKKYGPIF-RLYLGPKPVVVLSGPEAVKEVLI  60

Query  140  AETDFFTKKINAAHPLHPIKNQEAGVFLGD----TDTPEWRTAHKFLPPALGPKAVRHYA  195
             + + F     +  P  P      G FLG      + P WR   +FL P         + 
Sbjct  61   KKGEEF-----SGRPDEPWFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGKLSFE  115

Query  196  PMMQETVEDAFTVFDALDERGEAWNVYQYMLKLGSQAVGKLVLGIDFKHFSSIDEP-PHE  254
            P ++E   D               ++   + +     +  ++ G   + F S+++P   E
Sbjct  116  PRVEEEARDLVEKLRKTAGEPGVIDITDLLFRAALNVICSILFG---ERFGSLEDPKFLE  172

Query  255  LVYRIAE-SLELNKKVTAWGD---WYAKLPFGDPQRLRNARGRIIEMVNESIQNAARGGI  310
            LV  + E S  L+       D        P    ++L+ AR +I +++++ I+       
Sbjct  173  LVKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDLLDKLIEE-----R  227

Query  311  EDLPLQDAALKASNMVDYALRATDN-KGEKLPKTSLMQALVVATGAGFTTTSSLLSWLIY  369
             +  L  A     + +D  L A +   G KL    L   ++    AG  TTSS LSW +Y
Sbjct  228  RE-TLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALY  286

Query  370  GLVTYPGVQERLLQELIDNGIDADTQLTADLTDRLTFLDKFIKETQRRHNPSYQP-GRTA  428
             L  +P VQE+L +E ID  I      T D    + +LD  IKET R H        R  
Sbjct  287  ELAKHPEVQEKLREE-IDEVIGDKRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREV  345

Query  429  KVDMILPGGYKLPQDSVVIGALHHLHNNPDVWSNPARFDPDRWDTEEVKNRHKTAYIPFA  488
              D ++PG Y +P+ ++VI  L+ LH +P+V+ NP  FDP+R+  E  K R   A++PF 
Sbjct  346  TKDTVIPG-YLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFG  404

Query  489  TGPRMCIGFNFALQEVKVFLPKLVYRYKF  517
             GPR C+G   A  E+K+FL  L+  ++ 
Sbjct  405  AGPRNCLGERLARMEMKLFLATLLQNFEV  433



Lambda      K        H        a         alpha
   0.319    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 702381160


Query= TCONS_00021368

Length=361


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00021369

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.9    5e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.9 bits (174),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 124/383 (32%), Gaps = 48/383 (13%)

Query  42   FIRLFAYGGSTLILASYLS-ALGISDDRIGLFMTLTLVGDVAISFFLTLFADGIGRRAVL  100
            F+           L   L+  LGIS   IGL +TL  +G           +D  GRR VL
Sbjct  6    FLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVL  65

Query  101  ALGSALMACSGVVFGLFDNYWILLTAAVLGVISPSGNEIGPFRAVEESTLAHLTAKEHRS  160
             +G  L A   ++     + W+LL   VL  +       G       + +A     E R 
Sbjct  66   LIGLLLFALGLLLLLFASSLWLLLVLRVLQGLG-----AGALFPAALALIADWFPPEERG  120

Query  161  DIFVWYSLIGTAGTALGMMVCGWSINLLKTTRDWQYLNACRIVFFAYAGIGAVKFLLSIC  220
                  S     G ALG ++ G   +L      W+        F   A +  +  +L   
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLF----GWRA------AFLILAILSLLAAVL--L  168

Query  221  LSHEVEAAKKDKNSATASRQRRAADGPETQPLLGERANEDNQKKSLFSFLGSSDLVSLVV  280
            L        K    A  +R                           +  L    ++ L++
Sbjct  169  LLPRPPPESKRPKPAEEARLSLI---------------------VAWKALLRDPVLWLLL  207

Query  281  TLFVLFGLDSFASGLASLSWMTYFFKRKFSLPEGELGSIFFTTSLISAASMLVASSIAKR  340
             L        F      L      ++    L     G +     L+ A   L+   ++ R
Sbjct  208  ALL------LFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDR  261

Query  341  IGNVKTMVFTHL---PSAICLALIPVPSALPAALTFLILRACSQSMDVAPRSAFLAAALP  397
            +G  + ++   L    +A+ L L+ +  +    L  L+L      +     +A ++   P
Sbjct  262  LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAP  321

Query  398  PEKRTAIMGAINVVKTCSQSLGP  420
             E+R    G  N   +   +LGP
Sbjct  322  KEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00021371

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00021370

Length=304


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00021372

Length=374


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00021375

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.9    6e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.9 bits (174),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 124/383 (32%), Gaps = 48/383 (13%)

Query  42   FIRLFAYGGSTLILASYLS-ALGISDDRIGLFMTLTLVGDVAISFFLTLFADGIGRRAVL  100
            F+           L   L+  LGIS   IGL +TL  +G           +D  GRR VL
Sbjct  6    FLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVL  65

Query  101  ALGSALMACSGVVFGLFDNYWILLTAAVLGVISPSGNEIGPFRAVEESTLAHLTAKEHRS  160
             +G  L A   ++     + W+LL   VL  +       G       + +A     E R 
Sbjct  66   LIGLLLFALGLLLLLFASSLWLLLVLRVLQGLG-----AGALFPAALALIADWFPPEERG  120

Query  161  DIFVWYSLIGTAGTALGMMVCGWSINLLKTTRDWQYLNACRIVFFAYAGIGAVKFLLSIC  220
                  S     G ALG ++ G   +L      W+        F   A +  +  +L   
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLF----GWRA------AFLILAILSLLAAVL--L  168

Query  221  LSHEVEAAKKDKNSATASRQRRAADGPETQPLLGERANEDNQKKSLFSFLGSSDLVSLVV  280
            L        K    A  +R                           +  L    ++ L++
Sbjct  169  LLPRPPPESKRPKPAEEARLSLI---------------------VAWKALLRDPVLWLLL  207

Query  281  TLFVLFGLDSFASGLASLCWMTYFFKRKFSLPEGELGSIFFTTSLISAASMLVASSIAKR  340
             L +             L      ++    L     G +     L+ A   L+   ++ R
Sbjct  208  ALLLFGFAFFGLLTYLPL------YQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDR  261

Query  341  IGNVKTMVFTHL---PSAICLALIPVPSALPAALTFLILRACSQSMDVAPRSAFLAAALP  397
            +G  + ++   L    +A+ L L+ +  +    L  L+L      +     +A ++   P
Sbjct  262  LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAP  321

Query  398  PEKRTAIMGAINVVKTCSQSLGP  420
             E+R    G  N   +   +LGP
Sbjct  322  KEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00021374

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.1    1e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.1 bits (172),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 124/383 (32%), Gaps = 48/383 (13%)

Query  42   FIRLFAYGGSTLILASYLS-ALGISDDRIGLFMTLTLVGDVAISFFLTLFADGIGRRAVL  100
            F+           L   L+  LGIS   IGL +TL  +G           +D  GRR VL
Sbjct  6    FLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVL  65

Query  101  ALGSALMACSGVVFGLFDNYWILLTAAVLGVISPSGNEIGPFRAVEESTLAHLTAKEHRS  160
             +G  L A   ++     + W+LL   VL  +       G       + +A     E R 
Sbjct  66   LIGLLLFALGLLLLLFASSLWLLLVLRVLQGLG-----AGALFPAALALIADWFPPEERG  120

Query  161  DIFVWYSLIGTAGTALGMMVCGWSINLLKTTRDWQYLNACRIVFFAYAGIGAVKFLLSIC  220
                  S     G ALG ++ G   +L      W+        F   A +  +  +L   
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLF----GWRA------AFLILAILSLLAAVL--L  168

Query  221  LSHEVEAAKKDKNSATASRQRRAADGPETQPLLGERANEDNQKKSLFSFLGSSDLVSLVV  280
            L        K    A  +R                           +  L    ++ L++
Sbjct  169  LLPRPPPESKRPKPAEEARLSLI---------------------VAWKALLRDPVLWLLL  207

Query  281  TLFVLFGLDSFASGLASLSWMTYFFKRKFSLPEGELGSIFFTTSLISAASMLVASSIAKR  340
             L        F      L      ++    L     G +     L+ A   L+   ++ R
Sbjct  208  ALL------LFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDR  261

Query  341  IGNVKVMVFTHL---PSAICLALIPVPSALPAALTFLILRACSQSMDVAPRSAFLAAALP  397
            +G  + ++   L    +A+ L L+ +  +    L  L+L      +     +A ++   P
Sbjct  262  LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAP  321

Query  398  PEKRTAIMGAINVVKTCSQSLGP  420
             E+R    G  N   +   +LGP
Sbjct  322  KEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00026519

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.9    5e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.9 bits (174),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 124/383 (32%), Gaps = 48/383 (13%)

Query  42   FIRLFAYGGSTLILASYLS-ALGISDDRIGLFMTLTLVGDVAISFFLTLFADGIGRRAVL  100
            F+           L   L+  LGIS   IGL +TL  +G           +D  GRR VL
Sbjct  6    FLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVL  65

Query  101  ALGSALMACSGVVFGLFDNYWILLTAAVLGVISPSGNEIGPFRAVEESTLAHLTAKEHRS  160
             +G  L A   ++     + W+LL   VL  +       G       + +A     E R 
Sbjct  66   LIGLLLFALGLLLLLFASSLWLLLVLRVLQGLG-----AGALFPAALALIADWFPPEERG  120

Query  161  DIFVWYSLIGTAGTALGMMVCGWSINLLKTTRDWQYLNACRIVFFAYAGIGAVKFLLSIC  220
                  S     G ALG ++ G   +L      W+        F   A +  +  +L   
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLF----GWRA------AFLILAILSLLAAVL--L  168

Query  221  LSHEVEAAKKDKNSATASRQRRAADGPETQPLLGERANEDNQKKSLFSFLGSSDLVSLVV  280
            L        K    A  +R                           +  L    ++ L++
Sbjct  169  LLPRPPPESKRPKPAEEARLSLI---------------------VAWKALLRDPVLWLLL  207

Query  281  TLFVLFGLDSFASGLASLCVLTYFFKRKFSLPEGELGSIFFTTSLISAASMLVASSIAKR  340
             L        F      L      ++    L     G +     L+ A   L+   ++ R
Sbjct  208  ALL------LFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDR  261

Query  341  IGNVKTMVFTHL---PSAICLALIPVPSALPAALTFLILRACSQSMDVAPRSAFLAAALP  397
            +G  + ++   L    +A+ L L+ +  +    L  L+L      +     +A ++   P
Sbjct  262  LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAP  321

Query  398  PEKRTAIMGAINVVKTCSQSLGP  420
             E+R    G  N   +   +LGP
Sbjct  322  KEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00021373

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.5    7e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.5 bits (173),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 124/383 (32%), Gaps = 48/383 (13%)

Query  42   FIRLFAYGGSTLILASYLS-ALGISDDRIGLFMTLTLVGDVAISFFLTLFADGIGRRAVL  100
            F+           L   L+  LGIS   IGL +TL  +G           +D  GRR VL
Sbjct  6    FLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVL  65

Query  101  ALGSALMACSGVVFGLFDNYWILLTAAVLGVISPSGNEIGPFRAVEESTLAHLTAKEHRS  160
             +G  L A   ++     + W+LL   VL  +       G       + +A     E R 
Sbjct  66   LIGLLLFALGLLLLLFASSLWLLLVLRVLQGLG-----AGALFPAALALIADWFPPEERG  120

Query  161  DIFVWYSLIGTAGTALGMMVCGWSINLLKTTRDWQYLNACRIVFFAYAGIGAVKFLLSIC  220
                  S     G ALG ++ G   +L      W+        F   A +  +  +L   
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLF----GWRA------AFLILAILSLLAAVL--L  168

Query  221  LSHEVEAAKKDKNSATASRQRRAADGPETQPLLGERANEDNQKKSLFSFLGSSDLVSLVV  280
            L        K    A  +R                           +  L    ++ L++
Sbjct  169  LLPRPPPESKRPKPAEEARLSLI---------------------VAWKALLRDPVLWLLL  207

Query  281  TLFVLFGLDSFASGLASLSWMTYFFKRKFSLPEGELGSIFFTTSLISAASMLVASSIAKR  340
             L        F      L      ++    L     G +     L+ A   L+   ++ R
Sbjct  208  ALL------LFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDR  261

Query  341  IGNVKAMVFTHL---PSAICLALIPVPSALPAALTFLILRACSQSMDVAPRSAFLAAALP  397
            +G  + ++   L    +A+ L L+ +  +    L  L+L      +     +A ++   P
Sbjct  262  LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAP  321

Query  398  PEKRTAIMGAINVVKTCSQSLGP  420
             E+R    G  N   +   +LGP
Sbjct  322  KEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00026520

Length=304


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00021376

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.9    6e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.9 bits (174),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 124/383 (32%), Gaps = 48/383 (13%)

Query  42   FIRLFAYGGSTLILASYLS-ALGISDDRIGLFMTLTLVGDVAISFFLTLFADGIGRRAVL  100
            F+           L   L+  LGIS   IGL +TL  +G           +D  GRR VL
Sbjct  6    FLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVL  65

Query  101  ALGSALMACSGVVFGLFDNYWILLTAAVLGVISPSGNEIGPFRAVEESTLAHLTAKEHRS  160
             +G  L A   ++     + W+LL   VL  +       G       + +A     E R 
Sbjct  66   LIGLLLFALGLLLLLFASSLWLLLVLRVLQGLG-----AGALFPAALALIADWFPPEERG  120

Query  161  DIFVWYSLIGTAGTALGMMVCGWSINLLKTTRDWQYLNACRIVFFAYAGIGAVKFLLSIC  220
                  S     G ALG ++ G   +L      W+        F   A +  +  +L   
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLF----GWRA------AFLILAILSLLAAVL--L  168

Query  221  LSHEVEAAKKDKNSATASRQRRAADGPETQPLLGERANEDNQKKSLFSFLGSSDLVSLVV  280
            L        K    A  +R                           +  L    ++ L++
Sbjct  169  LLPRPPPESKRPKPAEEARLSLI---------------------VAWKALLRDPVLWLLL  207

Query  281  TLFVLFGLDSFASGLASLSWMTYFFKRKFSLPEGELGSIFFTTSLISAASMLVASSIAKR  340
             L        F      L      ++    L     G +     L+ A   L+   ++ R
Sbjct  208  ALL------LFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDR  261

Query  341  IGNVKTMVFTHL---PSAICLALIPVPSALPAALTFLILRACSQSMDVAPRSAFLAAALP  397
            +G  + ++   L    +A+ L L+ +  +    L  L+L      +     +A ++   P
Sbjct  262  LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAP  321

Query  398  PEKRTAIMGAINVVKTCSQSLGP  420
             E+R    G  N   +   +LGP
Sbjct  322  KEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00026521

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00026522

Length=342


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00021378

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0593    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00026523

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00021380

Length=435


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 529127880


Query= TCONS_00021379

Length=439


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00021381

Length=436


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00021382

Length=447


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00021384

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462244 pfam07716, bZIP_2, Basic region leucine zipper             65.3    9e-15


>CDD:462244 pfam07716, bZIP_2, Basic region leucine zipper.  
Length=51

 Score = 65.3 bits (160),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query  27  EKEQRRIERVLRNRAAAQTSRERKRLEMEKLENEKIQMEQQNQFLLQRLSQMEAE  81
           E   RR     +N  AA+ SRE+K+ + E+LE    ++E++N  L Q++ Q+E E
Sbjct  1   EYRDRRR----KNNEAAKRSREKKKQKEEELEERVKELERENAQLRQKVEQLEKE  51



Lambda      K        H        a         alpha
   0.311    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00021383

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00021385

Length=618


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 786069128


Query= TCONS_00021386

Length=618


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 786069128


Query= TCONS_00026524

Length=618


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 786069128


Query= TCONS_00021387

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00021388

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00021389

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00021390

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          64.9    2e-13


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 64.9 bits (159),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 41/133 (31%), Positives = 61/133 (46%), Gaps = 16/133 (12%)

Query  228  GVGRAAIQLAREWGIKTINVVRERRTPEETDALKRELYDLGANAVVTESELLSGEFKSMV  287
            GVG AAIQLA+  G K I V     + E+ +  K     LGA+ V+   E    +    +
Sbjct  1    GVGLAAIQLAKAAGAKVIAVD---GSEEKLELAKE----LGADHVINPKE---TDLVEEI  50

Query  288  NEFTRQGKEPIRLALNCVGGKSA--TALAKTLAPGSHLVTYGAMSKQPVTLPSGLLIFKN  345
             E T  G + + +  +CVG  +    AL K L PG  +V  G +   P+ LP   L+ K 
Sbjct  51   KELT--GGKGVDVVFDCVGSPATLEQAL-KLLRPGGRVVVVG-LPGGPLPLPLAPLLLKE  106

Query  346  LVFDGFWVSRWGD  358
            L   G ++    +
Sbjct  107  LTILGSFLGSPEE  119



Lambda      K        H        a         alpha
   0.315    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00021393

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00021391

Length=377
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  164     5e-50
CDD:460693 pfam02780, Transketolase_C, Transketolase, C-terminal ...  142     3e-42


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 164 bits (417),  Expect = 5e-50, Method: Composition-based stats.
 Identities = 65/182 (36%), Positives = 83/182 (46%), Gaps = 12/182 (7%)

Query  49   KEVTVRDALNEALAEELESNPKTFILGEEVAQYNGAYKVTKGLLDRFGPKRVIDTPITEA  108
            K++  R A  EALAE  + +P+    G ++A   G + VTKGLL   G  RVIDT I E 
Sbjct  1    KKIATRKASGEALAELAKRDPRVVGGGADLA--GGTFTVTKGLLHPQGAGRVIDTGIAEQ  58

Query  109  GFCGLAVGAALAG-LHPICEFMTFNFAMQAIDQIINSAAKTHYMSGGIQPCN-ITFRGPN  166
               G A G AL G L P  E    +F            A  H  + G  P   +  R P 
Sbjct  59   AMVGFANGMALHGPLLPPVEATFSDFLN------RADDAIRHGAALGKLPVPFVVTRDPI  112

Query  167  GFAAGVAAQHSQDYSAWYGSIPGLKVVAPWSAEDAKGLMKAAIR--DPNPVVVLENELLY  224
            G         S +  A+  +IPGLKVV P  A + KGL++AAIR     PVV+     L 
Sbjct  113  GVGEDGPTHQSVEDLAFLRAIPGLKVVRPSDAAETKGLLRAAIRRDGRKPVVLRLPRQLL  172

Query  225  GQ  226
              
Sbjct  173  RP  174


>CDD:460693 pfam02780, Transketolase_C, Transketolase, C-terminal domain. 
 The C-terminal domain of transketolase has been proposed as 
a regulatory molecule binding site.
Length=124

 Score = 142 bits (360),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 2/125 (2%)

Query  244  GKAKIERPGKDLTIVSLSRCVGQSLNAATELKQKYGVEAEVINLRSVKPLDVETIIQSLK  303
            GKA+I R G D+TIV+    V ++L AA  L  K G+ AEV++LR++KPLD ETI++S+K
Sbjct  1    GKAEILREGDDVTIVAYGSMVEEALEAAELLA-KEGISAEVVDLRTIKPLDKETILESVK  59

Query  304  KTGRLMCVESGFPMFGVGSEILALSMEYGFDYLTAPAVRVTGAEVPTPYAVG-LEQMSFP  362
            KTGRL+ VE   P  G GSE+ A   E  FD L AP +RV G + P P +   LE++   
Sbjct  60   KTGRLVTVEEAVPRGGFGSEVAAALAEEAFDGLDAPVLRVGGPDFPEPGSADELEKLYGL  119

Query  363  QEDTI  367
              + I
Sbjct  120  TPEKI  124



Lambda      K        H        a         alpha
   0.318    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 447362496


Query= TCONS_00021392

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  157     5e-49


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 157 bits (399),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 65/181 (36%), Positives = 84/181 (46%), Gaps = 12/181 (7%)

Query  49   KEVTVRDALNEALAEELESNPKTFILGEEVAQYNGAYKVTKGLLDRFGPKRVIDTPITEA  108
            K++  R A  EALAE  + +P+    G ++A   G + VTKGLL   G  RVIDT I E 
Sbjct  1    KKIATRKASGEALAELAKRDPRVVGGGADLA--GGTFTVTKGLLHPQGAGRVIDTGIAEQ  58

Query  109  GFCGLAVGAALAG-LHPICEFMTFNFAMQAIDQIINSAAKTHYMSGGIQPCN-ITFRGPN  166
               G A G AL G L P  E    +F            A  H  + G  P   +  R P 
Sbjct  59   AMVGFANGMALHGPLLPPVEATFSDFLN------RADDAIRHGAALGKLPVPFVVTRDPI  112

Query  167  GFAAGVAAQHSQDYSAWYGSIPGLKVVAPWSAEDAKGLMKAAIR--DPNPVVVLENEYVL  224
            G         S +  A+  +IPGLKVV P  A + KGL++AAIR     PVV+     +L
Sbjct  113  GVGEDGPTHQSVEDLAFLRAIPGLKVVRPSDAAETKGLLRAAIRRDGRKPVVLRLPRQLL  172

Query  225  P  225
             
Sbjct  173  R  173



Lambda      K        H        a         alpha
   0.319    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00026526

Length=1620
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465705 pfam18314, FAS_I_H, Fatty acid synthase type I helical...  301     2e-94
CDD:465711 pfam18325, Fas_alpha_ACP, Fatty acid synthase subunit ...  182     2e-53
CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  79.6    1e-16
CDD:426364 pfam01648, ACPS, 4'-phosphopantetheinyl transferase su...  72.6    1e-15


>CDD:465705 pfam18314, FAS_I_H, Fatty acid synthase type I helical domain. 
 This domain is found in the fatty acid synthase (FAS) complex 
present in species such as Mycobacterium smegmatis and 
Thermomyces lanuginosus. FAS is a homo-hexameric enzyme that 
catalyzes synthesis of fatty acid precursors of mycolic acids. 
This domain is composed of dimerization module 1 (DM1) and 
four-helix bundle (4HB), both of which are conserved parts 
of the acetyl transferase.
Length=203

 Score = 301 bits (772),  Expect = 2e-94, Method: Composition-based stats.
 Identities = 110/203 (54%), Positives = 140/203 (69%), Gaps = 0/203 (0%)

Query  117  TKDQRALFKQQLEIIARYLKMDLRAGQKAFIASQETQNALQAQLDLWQAEHGDVYASGIE  176
            TK Q  L +QQ + +ARYL +DL A ++   +S      LQA+LDLW AEHGD YA+GI+
Sbjct  1    TKKQNQLLRQQNQALARYLGIDLDASERELASSSALVAELQAELDLWIAEHGDEYANGIK  60

Query  177  PAFDSLKARVYDSSWNWARQDALSMYYDIIFGRLKVVDREIVSQCIRIMNRSNPLLLDFM  236
            P FD+ KAR YDS WNWARQD L +YYD++ GRLK VDREI S+  RI+NR++  L+D +
Sbjct  61   PIFDAKKARRYDSWWNWARQDILKLYYDLLQGRLKDVDREITSRLQRILNRADENLVDLV  120

Query  237  QYHIDNCPTERGETYQLAKELGQQLIENCKEVLGVAPVYKDVAIPTGPQTTIDARGNIAY  296
            QY ID+     GE Y  AK LG+QL++NC+  L   PVYKD + PT P TTID +GNI Y
Sbjct  121  QYLIDHAKDSSGEGYAAAKALGEQLLQNCRSALNAPPVYKDDSPPTAPHTTIDPKGNIEY  180

Query  297  KEVPRASARKLEHYVKQMAEGGP  319
            +EVPRA  ++L  YV  MA GG 
Sbjct  181  EEVPRAGVQELTDYVSSMASGGS  203


>CDD:465711 pfam18325, Fas_alpha_ACP, Fatty acid synthase subunit alpha Acyl 
carrier domain.  This is the acyl carrier domain (ACP) found 
in fatty acid synthase subunit alpha (FAS2) EC:2.3.1.86.The 
fungal type I fatty acid synthase (FAS) is a 2.6 MDa multienzyme 
complex, catalyzing all necessary steps for the synthesis 
of long acyl chains. To be catalytically competent, 
the FAS must be activated by a posttranslational modification 
of the central acyl carrier domain (ACP) by an intrinsic phosphopantetheine 
transferase (PPT).
Length=162

 Score = 182 bits (464),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 66/90 (73%), Positives = 73/90 (81%), Gaps = 0/90 (0%)

Query  1    MQATFNGQLGKQSSSLIARLVSSKMPGGFNITAVRKYLETRWGLGPGRQDGVLLLALTME  60
            +Q+ F+G LGKQSS LI+RLVSSKMPGGFN  A RKYL  RWGLGPGRQD VLLLALTME
Sbjct  73   LQSGFSGALGKQSSGLISRLVSSKMPGGFNQAAARKYLSKRWGLGPGRQDSVLLLALTME  132

Query  61   PPSRIGSEPDAKAYLDDVTNKYAANAGINL  90
            P SR+GSE +AKA+LD V   YAA AGI L
Sbjct  133  PASRLGSEAEAKAFLDSVVQAYAAKAGITL  162


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 79.6 bits (197),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 81/231 (35%), Gaps = 47/231 (20%)

Query  946   DRLVAGQIPTGW---------DARRYGIPDDIIEQVDPVTLFVLVCTAEAMLSAGVTDPY  996
                +AG+I T W         D   +GI     E++DP    +L    EA+  AG+T   
Sbjct  49    PSRIAGKIYTKWGGLDDIFDFDPLFFGISPREAERMDPQQRLLLEAAWEALEDAGITP--  106

Query  997   EFYKYVHLSEVGNCIGSGIGGTHALRGMYKDRYLDKPLQKDILQESFINTMSAWV--NML  1054
                  +  S  G  IGSGIG   AL  + +D               F       V    +
Sbjct  107   ---DSLDGSRTGVFIGSGIGDYAALLLLDED-------GGPRRGSPFAVGTMPSVIAGRI  156

Query  1055  --LLSSTGPIKTPVGACATAVESVDIGYETIVEGKARVCFVGGFD-DFQEEGSYEFANMK  1111
                L   GP  T   AC++++ ++    ++I  G+A V   GG +      G   F+   
Sbjct  157   SYFLGLRGPSVTVDTACSSSLVAIHAAVQSIRSGEADVALAGGVNLLLTPLGFAGFSAAG  216

Query  1112  ATSN-----AEDEFAHGRTPQEMSRPTTTTRAGFMESQGCGMQLIMSAQLA  1157
               S      A D FA                 GF+  +G G  ++     A
Sbjct  217   MLSPDGPCKAFDPFAD----------------GFVRGEGVGAVVLKRLSDA  251


>CDD:426364 pfam01648, ACPS, 4'-phosphopantetheinyl transferase superfamily. 
 Members of this family transfers the 4'-phosphopantetheine 
(4'-PP) moiety from coenzyme A (CoA) to the invariant serine 
of pfam00550. This post-translational modification renders 
holo-ACP capable of acyl group activation via thioesterification 
of the cysteamine thiol of 4'-PP. This superfamily 
consists of two subtypes: The ACPS type and the Sfp type. The 
structure of the Sfp type is known, which shows the active 
site accommodates a magnesium ion. The most highly conserved 
regions of the alignment are involved in binding the magnesium 
ion.
Length=111

 Score = 72.6 bits (178),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 39/87 (45%), Gaps = 6/87 (7%)

Query  1532  RIGVDVENIDAVNIE----NETFIERNFTASEQEYCRKASSPQSS-FAGRWSAKEAVFKS  1586
              +G+D+E I  +        E   ER FT  E+       +     FA  W+AKEAVFK+
Sbjct  1     GVGIDIEEIARIRRPIERLGERLAERIFTPEERALLASLPAEARRAFARLWTAKEAVFKA  60

Query  1587  LGVCSKGAGAPLKDIEILSDTSGAPVV  1613
             LG           DIE+L D  G P +
Sbjct  61    LGPGL-SKLLDFDDIEVLLDPDGRPTL  86



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2063939202


Query= TCONS_00021394

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400346 pfam07950, DUF1691, Protein of unknown function (DUF16...  113     4e-33


>CDD:400346 pfam07950, DUF1691, Protein of unknown function (DUF1691).  This 
family of fungal proteins is uncharacterized. Each protein 
contains two copies of this region.
Length=105

 Score = 113 bits (286),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 53/115 (46%), Positives = 63/115 (55%), Gaps = 23/115 (20%)

Query  84   PLLGAHVLVNRIVPLMVDGGSSGVGLGYVAHGFVRSPVFWNIYYLIFVAVGVWHIVGGWA  143
            PLLG H  VNRIVPL+V+G SS VGL YVAHGF R P      Y   V  GV HIV GWA
Sbjct  1    PLLGLHAFVNRIVPLIVEGDSSPVGLLYVAHGFARHPPLSWAGYAALVGSGVGHIVWGWA  60

Query  144  NWMGWRVTTARKERINKKGSLEGYLGYTDSEHRMRKQRKIWWIVNGIAVVGASIW  198
             W+GW  +T                       R +K+R+ WWI+NGIA   A++W
Sbjct  61   KWLGWAPST-----------------------RKKKRRRRWWIINGIAAAVAALW  92



Lambda      K        H        a         alpha
   0.324    0.140    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00021395

Length=793
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396545 pfam02005, TRM, N2,N2-dimethylguanosine tRNA methyltra...  371     1e-122


>CDD:396545 pfam02005, TRM, N2,N2-dimethylguanosine tRNA methyltransferase. 
 This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. 
The TRM1 gene of Saccharomyces cerevisiae is necessary for 
the N2,N2-dimethylguanosine modification of both mitochondrial 
and cytoplasmic tRNAs. The enzyme is found in both eukaryotes 
and archaebacteria.
Length=375

 Score = 371 bits (954),  Expect = 1e-122, Method: Composition-based stats.
 Identities = 161/489 (33%), Positives = 224/489 (46%), Gaps = 133/489 (27%)

Query  160  VFYNPIQQFNRDLSVLAIKAYGEHVLALKKLKAERKRNGSSRGKKRKREDEEDKEQDEVD  219
            VFYNP  +FNRDLSVL I+      L L   K  RK                        
Sbjct  20   VFYNPRMEFNRDLSVLVIRQ-----LNLLHKKLGRK------------------------  50

Query  220  VEQPSAANGNIGASVSTSDQQTPSFTILDALSATGLRALRYASEIPFTTCVVANDLSNSA  279
                                      +LDALSA+G+RA+R+A E+P    V AND+S  A
Sbjct  51   ------------------------IKVLDALSASGIRAIRFALEVPGVEEVFANDISPKA  86

Query  280  IQRMKTNIEYNGLGKLIRPNLGDARAYMYSLLNQPSSQNSGTHAGKFDVIDLDPYGTAAP  339
            ++ +K N++ N +  ++  N  DA A+M              +  +FDVIDLDP+G+ AP
Sbjct  87   VESIKENVKLNEVENIVVINGDDANAFMRE------------NHRRFDVIDLDPFGSPAP  134

Query  340  FMDAAVQGVKDGGLLCVTCTDAGVWASNGYPEKAYALYGGVPIKGSHSHEGGLRLILHGL  399
            F+D+AVQ VK GGLLCVT TD  V     YP+     YG  P++    HE GLR++L  +
Sbjct  135  FLDSAVQSVKRGGLLCVTATDTAVLCGT-YPKSCLRKYGARPLRTEFCHEVGLRILLGFV  193

Query  400  ATSAAKYGLAIEPLLSLSIDFYARVFVRVHRSPAEVKFTSGNTMLVFNCDSGCGAWTTQP  459
            A  AAKY  A+EPLLS SID Y RVFV+V R  A+V         V++C SGC       
Sbjct  194  ARLAAKYEKALEPLLSYSIDHYVRVFVKVKRGAAKVDKVIEKLGYVYHC-SGC-------  245

Query  460  LTQTKQKLDKKGNPYYHYGFAQGPTAGTHCEHCGFKTHVGGPMWAGPLHNPHFIQKILDM  519
                        +     G A+       C HCG K H+ GP+W GPLH+  F++++L++
Sbjct  246  -----------LSREVVTGIAKFS---AECPHCGGKFHLAGPLWLGPLHDKEFVEEVLEI  291

Query  520  LPDVDRDIYHTVERIEGMLTTALEEDLNLDTISSSTPTGTLAAEKELTEVSTSREYSAII  579
                + +     +R+ G+L    EE L++                               
Sbjct  292  AEKKEEEFS---KRVLGILKLIKEELLDV-------------------------------  317

Query  580  PRLDPALRDPFPFYFTLSSLAKVLHTSTISADAFRGALRSLGYRSTRSHAKPNTIRTDAP  639
                       P Y+ L  LA VL  S         AL+S G+  +R+HA P  I+T+AP
Sbjct  318  -----------PGYYDLHQLASVLKLSVPPLQDVVSALKSAGFEVSRTHANPTGIKTNAP  366

Query  640  WDVIWEIMR  648
            W+ +WE+MR
Sbjct  367  WEEVWEVMR  375



Lambda      K        H        a         alpha
   0.316    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1017151248


Query= TCONS_00021396

Length=1612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465705 pfam18314, FAS_I_H, Fatty acid synthase type I helical...  300     7e-94
CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  79.6    1e-16
CDD:426364 pfam01648, ACPS, 4'-phosphopantetheinyl transferase su...  72.3    1e-15


>CDD:465705 pfam18314, FAS_I_H, Fatty acid synthase type I helical domain. 
 This domain is found in the fatty acid synthase (FAS) complex 
present in species such as Mycobacterium smegmatis and 
Thermomyces lanuginosus. FAS is a homo-hexameric enzyme that 
catalyzes synthesis of fatty acid precursors of mycolic acids. 
This domain is composed of dimerization module 1 (DM1) and 
four-helix bundle (4HB), both of which are conserved parts 
of the acetyl transferase.
Length=203

 Score = 300 bits (769),  Expect = 7e-94, Method: Composition-based stats.
 Identities = 110/203 (54%), Positives = 140/203 (69%), Gaps = 0/203 (0%)

Query  109  TKDQRALFKQQLEIIARYLKMDLRAGQKAFIASQETQNALQAQLDLWQAEHGDVYASGIE  168
            TK Q  L +QQ + +ARYL +DL A ++   +S      LQA+LDLW AEHGD YA+GI+
Sbjct  1    TKKQNQLLRQQNQALARYLGIDLDASERELASSSALVAELQAELDLWIAEHGDEYANGIK  60

Query  169  PAFDSLKARVYDSSWNWARQDALSMYYDIIFGRLKVVDREIVSQCIRIMNRSNPLLLDFM  228
            P FD+ KAR YDS WNWARQD L +YYD++ GRLK VDREI S+  RI+NR++  L+D +
Sbjct  61   PIFDAKKARRYDSWWNWARQDILKLYYDLLQGRLKDVDREITSRLQRILNRADENLVDLV  120

Query  229  QYHIDNCPTERGETYQLAKELGQQLIENCKEVLGVAPVYKDVAIPTGPQTTIDARGNIAY  288
            QY ID+     GE Y  AK LG+QL++NC+  L   PVYKD + PT P TTID +GNI Y
Sbjct  121  QYLIDHAKDSSGEGYAAAKALGEQLLQNCRSALNAPPVYKDDSPPTAPHTTIDPKGNIEY  180

Query  289  KEVPRASARKLEHYVKQMAEGGP  311
            +EVPRA  ++L  YV  MA GG 
Sbjct  181  EEVPRAGVQELTDYVSSMASGGS  203


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 79.6 bits (197),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 81/231 (35%), Gaps = 47/231 (20%)

Query  938   DRLVAGQIPTGW---------DARRYGIPDDIIEQVDPVTLFVLVCTAEAMLSAGVTDPY  988
                +AG+I T W         D   +GI     E++DP    +L    EA+  AG+T   
Sbjct  49    PSRIAGKIYTKWGGLDDIFDFDPLFFGISPREAERMDPQQRLLLEAAWEALEDAGITP--  106

Query  989   EFYKYVHLSEVGNCIGSGIGGTHALRGMYKDRYLDKPLQKDILQESFINTMSAWV--NML  1046
                  +  S  G  IGSGIG   AL  + +D               F       V    +
Sbjct  107   ---DSLDGSRTGVFIGSGIGDYAALLLLDED-------GGPRRGSPFAVGTMPSVIAGRI  156

Query  1047  --LLSSTGPIKTPVGACATAVESVDIGYETIVEGKARVCFVGGFD-DFQEEGSYEFANMK  1103
                L   GP  T   AC++++ ++    ++I  G+A V   GG +      G   F+   
Sbjct  157   SYFLGLRGPSVTVDTACSSSLVAIHAAVQSIRSGEADVALAGGVNLLLTPLGFAGFSAAG  216

Query  1104  ATSN-----AEDEFAHGRTPQEMSRPTTTTRAGFMESQGCGMQLIMSAQLA  1149
               S      A D FA                 GF+  +G G  ++     A
Sbjct  217   MLSPDGPCKAFDPFAD----------------GFVRGEGVGAVVLKRLSDA  251


>CDD:426364 pfam01648, ACPS, 4'-phosphopantetheinyl transferase superfamily. 
 Members of this family transfers the 4'-phosphopantetheine 
(4'-PP) moiety from coenzyme A (CoA) to the invariant serine 
of pfam00550. This post-translational modification renders 
holo-ACP capable of acyl group activation via thioesterification 
of the cysteamine thiol of 4'-PP. This superfamily 
consists of two subtypes: The ACPS type and the Sfp type. The 
structure of the Sfp type is known, which shows the active 
site accommodates a magnesium ion. The most highly conserved 
regions of the alignment are involved in binding the magnesium 
ion.
Length=111

 Score = 72.3 bits (177),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 39/87 (45%), Gaps = 6/87 (7%)

Query  1524  RIGVDVENIDAVNIE----NETFIERNFTASEQEYCRKASSPQSS-FAGRWSAKEAVFKS  1578
              +G+D+E I  +        E   ER FT  E+       +     FA  W+AKEAVFK+
Sbjct  1     GVGIDIEEIARIRRPIERLGERLAERIFTPEERALLASLPAEARRAFARLWTAKEAVFKA  60

Query  1579  LGVCSKGAGAPLKDIEILSDTSGAPVV  1605
             LG           DIE+L D  G P +
Sbjct  61    LGPGL-SKLLDFDDIEVLLDPDGRPTL  86



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2053083506


Query= TCONS_00021400

Length=2092
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369827 pfam08354, DUF1729, Domain of unknown function (DUF172...  577     0.0  
CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          250     6e-75
CDD:407799 pfam17951, FAS_meander, Fatty acid synthase meander be...  237     1e-72
CDD:407694 pfam17828, FAS_N, N-terminal domain in fatty acid synt...  145     1e-40
CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain. The maoC...  144     2e-40
CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflat...  115     5e-29
CDD:433220 pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC de...  97.0    8e-24


>CDD:369827 pfam08354, DUF1729, Domain of unknown function (DUF1729).  This 
domain of unknown function is found in fatty acid synthase 
beta subunits together with the MaoC-like domain (pfam01575) 
and the Acyltransferase domain (pfam00698). The domain has 
been identified in fungi and bacteria.
Length=353

 Score = 577 bits (1489),  Expect = 0.0, Method: Composition-based stats.
 Identities = 207/353 (59%), Positives = 254/353 (72%), Gaps = 3/353 (1%)

Query  738   PVILQWTGGRGGGHHSFEDFHQPILQMYSRIRRCENIVLVAGSGFGGAEDTYPYLSGAWS  797
             P+ILQWTGGR GGHHS EDFH P+L  Y+RIR  +N+VLV GSGFG  ED  PYL+G WS
Sbjct  1     PIILQWTGGRAGGHHSNEDFHAPLLATYARIREQDNVVLVVGSGFGDPEDGAPYLTGEWS  60

Query  798   SSFGYPPMPFDGCLFGSRLMIAKEAHTSKNAKKAIADAPGLDDKDWEKTYKGPAGGVVTV  857
               FG PPMP DG L GSR M+AKEAHTS   K+ I + PG  D +W+ TY  PAGGVV+V
Sbjct  61    QRFGLPPMPVDGILLGSRAMVAKEAHTSDEVKQLIVETPGCKDDEWQATYGKPAGGVVSV  120

Query  858   LSEMGEPIHKLATRGVLFWHEMDQKIFKL-DKAKRVPELKKQRDYIIKKLNDDFQKVWFG  916
              SE+GEPIHK+A R    W E+D+ IF L    KR   L+K+RD II++LN D+QK WF 
Sbjct  121   RSELGEPIHKIANRAARLWRELDETIFSLAPVEKRGAALRKKRDEIIERLNKDYQKPWFA  180

Query  917   RNAAGEAVDLEDMTYAEVVHRMVELMYVKHESRWIDASLKKLTGDFIRRVEERFTTKEG-  975
              +  G+ VDLE+MTY+EVV R +ELMY+ H  RWID S K+L  D ++RVEER    +  
Sbjct  181   VDQHGDPVDLEEMTYSEVVRRFLELMYLPHTGRWIDPSWKRLFQDLLQRVEERLHPTDHG  240

Query  976   -QASLLQNYSELDTPYPAIDNILAAYPEAATQLINAQDVHHFLLLCQRRGQKPVPFVPAL  1034
                SL +   EL+ P  AI+ + AAYP AATQL++ +D   FL LCQRRGQKPVPFVPAL
Sbjct  241   PIESLFETVEELEDPAEAINTLTAAYPGAATQLLHPEDCAWFLQLCQRRGQKPVPFVPAL  300

Query  1035  DENFEYWFKKDSLWQSEDLEAVVGQDVGRTCILQGPMAAKFSNTIDEPVQQIL  1087
             DE+FE+WFKKDSLWQSEDL+AVV QD  R CIL GP+A ++S   +EPV++IL
Sbjct  301   DEDFEFWFKKDSLWQSEDLDAVVNQDAQRVCILHGPVAVQYSTRANEPVKEIL  353


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 250 bits (641),  Expect = 6e-75, Method: Composition-based stats.
 Identities = 93/388 (24%), Positives = 142/388 (37%), Gaps = 87/388 (22%)

Query  1691  YVFTGQGSQEQGMGMELYSSSPVAREVWDRADRHFIENYGLSIIDIVKNNPKELTVYFGG  1750
             +VF+GQGSQ  GMGM+L  +SP    V DRAD  F   YG S+ D+++NNP         
Sbjct  2     FVFSGQGSQWAGMGMQLLKTSPAFAAVIDRADEAFKPQYGFSVSDVLRNNP---------  52

Query  1751  PRGKAIRQNYMSMTFETVNADGTIKSEKIFKQINEDTISYTYRSPSGLLSATQFTQPALT  1810
                                                           G L  TQF QPAL 
Sbjct  53    ---------------------------------------------EGTLDGTQFVQPALF  67

Query  1811  LMEKASFEDMRSKGLVQRDSSFAGHSLGEYSALAALADVMPIESLVSVVFYRGLTMQVAV  1870
              M+ A    ++S G   R  +  GHSLGEY+A      + P E+L++ V    L MQ+A 
Sbjct  68    AMQIALAALLQSYG--VRPDAVVGHSLGEYAAAVVAGALSPEEALLAAVLRSRLMMQLAG  125

Query  1871  ERDEQGRSN-------------YSMCAVNPSRISKTFNEQALQYVVENIAEQT-GWLLEI  1916
                                         +P  +  +  ++A++ +VE ++++  G L+E 
Sbjct  126   PGGMAAVELSAEEVEQRWPDDVVGAVVNSPRSVVISGPQEAVRELVERVSKEGVGALVEN  185

Query  1917  VNYNVANMQYVAAGDLRALDCLTNLLNYLKAQNIDIPALMQSMSLDD-LKAHLVKIIHEC  1975
             VNY V + Q  A                 +   I       S S+D   +  L       
Sbjct  186   VNYAVHSPQMDAIAPALLSALADIAPRTPRVPFIS------STSIDPSDQRTLSAEYWVR  239

Query  1976  VKQTESKPRPIVLERGFATIPLKGIDVPFHSTFLRSGVKPFRSFLLKKINKTTIDPSKLI  2035
               ++  +    +L       PL  I++  H   L + +   +S        +    + L+
Sbjct  240   NLRSPVRFAEAILSA-AEPGPLVFIEISPHPLLLAALIDTLKS-------ASDGKVATLV  291

Query  2036  GKYIPNVTARPFEITKEYFEDVYRLTNS  2063
             G  I + T   F +T  Y   V  LT S
Sbjct  292   GTLIRDQTD--FLVTFLYILAVAHLTGS  317


>CDD:407799 pfam17951, FAS_meander, Fatty acid synthase meander beta sheet 
domain.  This domain is found in fungal fatty acid synthase 
beta chain proteins.
Length=146

 Score = 237 bits (606),  Expect = 1e-72, Method: Composition-based stats.
 Identities = 78/146 (53%), Positives = 101/146 (69%), Gaps = 0/146 (0%)

Query  1150  SGDLPDLDLWLRLLAGKSYSWRHALFLADVFVQGHRFQTNPMKRIVAPTPGMYVEISYPE  1209
                LP  + WL+LLAG   SWR AL  +D  VQG ++Q NP++R+ AP  G  VEI+ P+
Sbjct  1     GSALPSPESWLQLLAGTELSWRRALLTSDTIVQGRKYQDNPIRRLFAPRAGQTVEITNPD  60

Query  1210  EPSKTTICVREPYQSGKLVKTVEVKVNDQGQISLTLFEGRTAEGGVVPLSFLFTYHPEAG  1269
              P KT + V E   SG+LVK VE++ +   +I +TL+E RTA+G  VPL   FTYHPE G
Sbjct  61    SPEKTVVTVFEASASGELVKVVEIRKSGDNEIIVTLYEYRTADGKPVPLPLEFTYHPEMG  120

Query  1270  YAPIREVMDGRNDRIKEFYYRVWFGS  1295
             YAPI EVM+GRNDRIKEFY+++WFG 
Sbjct  121   YAPIHEVMEGRNDRIKEFYWKLWFGD  146


>CDD:407694 pfam17828, FAS_N, N-terminal domain in fatty acid synthase subunit 
beta.  This entry represents the N-terminal domain found 
in fatty acid synthase proteins.
Length=127

 Score = 145 bits (367),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 85/120 (71%), Gaps = 6/120 (5%)

Query  20   SLRPLILTHGSLEFSFLVPTSLHFYASQLKETFTASLPQPTDELAQDDEPSSVAELVARY  79
            S RPLILTHGSLE S LVP+ L+ +A QL++ FTASLP P++ +A +DEP SV EL+A++
Sbjct  1    STRPLILTHGSLEISILVPSDLYGHAEQLRDEFTASLPIPSEGIADEDEPESVIELLAKF  60

Query  80   IGHVAREVEEGEDDAQGTCLEVLKLALNEFERAFMRGNDVHAVAAALP---GITAKKILV  136
            +G V   +   E D+QG   +VL L LNEFE +++  ND+HAV + LP    + A+K+++
Sbjct  61   LGFVTSSI---ESDSQGQFTDVLLLLLNEFESSYLAKNDIHAVVSNLPKETTLLARKVVI  117


>CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain.  The maoC gene 
is part of a operon with maoA which is involved in the synthesis 
of monoamine oxidase. The MaoC protein is found to share 
similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 
4, peroxisomal hydratase-dehydrogenase-epimerase, 
fatty acid synthase beta subunit. Several bacterial proteins 
that are composed solely of this domain have (R)-specific 
enoyl-CoA hydratase activity. This domain is also present 
in the NodN nodulation protein N.
Length=123

 Score = 144 bits (364),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 56/130 (43%), Gaps = 9/130 (7%)

Query  1545  RNGTSIEQPVYFENPIPLSGKTPLVLRAPASNETYARVSGDYNPIHVSRVFSSYANLPGT  1604
                 +  +P   E P  ++          A    +A VSGD+NPIHV   F+  A   G 
Sbjct  1     DFQNAPGEPPDTEKPRTVT---------EADIALFALVSGDHNPIHVDPEFAKKAGFGGP  51

Query  1605  ITHGMYTSAAVRSFVETWAAENNIGRVRGFHVSLVGMVLPNDMITVKLQHVGMVAGRKII  1664
             I HGM T A V   VE W  +N I R     V     V P D +  + + VG   GR+  
Sbjct  52    IAHGMLTLAIVAGLVEEWGGDNVIARFGEIKVRFTKPVFPGDTLRTEAEVVGKRDGRQTK  111

Query  1665  KVEASNKETE  1674
              VE + + TE
Sbjct  112   VVEVTVEVTE  121


>CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflatoxin biosynthesis. 
 SAT is the N-terminal starter unit:ACP transacylase 
of the aflatoxin biosynthesis pathway. SAT selects the 
hexanoyl starter unit from a pair of specialized fungal fatty 
acid synthase subunits (HexA/HexB) and transfers it onto the 
polyketide synthase A acyl-carrier protein to prime polyketide 
chain elongation. The family is found in association with 
pfam02801, pfam00109, pfam00550, pfam00975, pfam00698.
Length=239

 Score = 115 bits (291),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 54/274 (20%), Positives = 101/274 (37%), Gaps = 41/274 (15%)

Query  172  VFGGQGNIEEYFDELREIYT-TYPSFVEDLISSSADLLQQ-LSREPEASKLYPKGLDVIQ  229
            +FG Q    ++   LR++        +   +  +AD L+  +SR P A +     L    
Sbjct  2    LFGDQTL--DFLPGLRQLLRAKDNPLLASFLERAADALRAEISRLPRAER---DSLPRFT  56

Query  230  WLQDRDSQPDTDYLVAAPVSLPLIGLVQLAHFVVTCKVLGRQPGEILERF-SGTTGHSQG  288
             LQ+   +          +   L+ + QL HF+     L     +      +   G   G
Sbjct  57   SLQELLERYYASGDKNPALESALLCIAQLGHFIDY---LEENGEDYPSPSSTYLVGLCTG  113

Query  289  VVTAAAIASATTWESFAKAAKDALTMLFWIGLRSQQAYPRTSIAPSVLQDSIENGEGVPT  348
            ++ AAA++ + +       A +A+ + F +GL  Q+      +  S             +
Sbjct  114  LLAAAAVSCSRSLSELVPLAVEAVRIAFRLGLLVQRV--ADRLEGS--------SSSPGS  163

Query  349  PMLSIRDLPRSAVQEHIDTTNQH--LPVDRHISISLVNSARNFVVTGPPLSLYGLNLRLR  406
              L +  L     ++ ++  N+   +P      IS V+ + +  ++GPP +   L L L 
Sbjct  164  WSLVVPGLSEEEAEKALEQFNESKGIPPASRPYISAVSPS-SVTISGPPST---LELLLS  219

Query  407  KVKAPTGLDQNRVPFTQRKVRFVNRFLPITAPFH  440
               A   L +                LPI AP+H
Sbjct  220  SSPAKKSLPKTP--------------LPIYAPYH  239


>CDD:433220 pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase. 
 It is clear from the structures of bacterial members of 
MaoC dehydratase, pfam01575, that the full-length functional 
dehydratase enzyme is made up of two structures that dimerize 
to form a whole. Divergence of the N- and C- monomers in 
higher eukaryotes has led to two distinct domains, this one 
and MaoC_dehydratas. However, in order to function as an enzyme 
both are required together.
Length=132

 Score = 97.0 bits (242),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 34/132 (26%), Positives = 56/132 (42%), Gaps = 16/132 (12%)

Query  1308  FSGGRETITAQAVADFVHAVGNTGEAFVDRPGK------EVFAPMDFAIVVGWKAITKPI  1361
             F   +  +   A+ +F  A+G T  A+ D          ++ AP  F  V+GW A   P 
Sbjct  7     FGPVKYEVERGAIREFARAIGETNPAYWDEAAARAAGYGDLPAPPTFLFVLGWDA---PG  63

Query  1362  FPRTIDGDLLKLVHLSNGFKMVPGAQPLKVGDVLDTTAQINAVINQDS---GKMVEVCGT  1418
             F   +  DL +L+H    F      +PL+ GD L   +QI  V ++        V V   
Sbjct  64    FMEQLGIDLSRLLHGEQRFTY---HRPLRAGDELTCRSQIADVYDKKGNGALCFVVVETE  120

Query  1419  I-HRDGQPIMHV  1429
             + ++ G+P+   
Sbjct  121   VTNQRGEPVATR  132



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0715    0.140     1.90     42.6     43.6 

Effective search space used: 2623512826


Query= TCONS_00021397

Length=1944
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369827 pfam08354, DUF1729, Domain of unknown function (DUF172...  576     0.0  
CDD:407799 pfam17951, FAS_meander, Fatty acid synthase meander be...  237     1e-72
CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          200     2e-57
CDD:407694 pfam17828, FAS_N, N-terminal domain in fatty acid synt...  145     9e-41
CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain. The maoC...  143     3e-40
CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflat...  115     5e-29
CDD:433220 pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC de...  96.6    1e-23


>CDD:369827 pfam08354, DUF1729, Domain of unknown function (DUF1729).  This 
domain of unknown function is found in fatty acid synthase 
beta subunits together with the MaoC-like domain (pfam01575) 
and the Acyltransferase domain (pfam00698). The domain has 
been identified in fungi and bacteria.
Length=353

 Score = 576 bits (1486),  Expect = 0.0, Method: Composition-based stats.
 Identities = 207/353 (59%), Positives = 254/353 (72%), Gaps = 3/353 (1%)

Query  738   PVILQWTGGRGGGHHSFEDFHQPILQMYSRIRRCENIVLVAGSGFGGAEDTYPYLSGAWS  797
             P+ILQWTGGR GGHHS EDFH P+L  Y+RIR  +N+VLV GSGFG  ED  PYL+G WS
Sbjct  1     PIILQWTGGRAGGHHSNEDFHAPLLATYARIREQDNVVLVVGSGFGDPEDGAPYLTGEWS  60

Query  798   SSFGYPPMPFDGCLFGSRLMIAKEAHTSKNAKKAIADAPGLDDKDWEKTYKGPAGGVVTV  857
               FG PPMP DG L GSR M+AKEAHTS   K+ I + PG  D +W+ TY  PAGGVV+V
Sbjct  61    QRFGLPPMPVDGILLGSRAMVAKEAHTSDEVKQLIVETPGCKDDEWQATYGKPAGGVVSV  120

Query  858   LSEMGEPIHKLATRGVLFWHEMDQKIFKL-DKAKRVPELKKQRDYIIKKLNDDFQKVWFG  916
              SE+GEPIHK+A R    W E+D+ IF L    KR   L+K+RD II++LN D+QK WF 
Sbjct  121   RSELGEPIHKIANRAARLWRELDETIFSLAPVEKRGAALRKKRDEIIERLNKDYQKPWFA  180

Query  917   RNAAGEAVDLEDMTYAEVVHRMVELMYVKHESRWIDASLKKLTGDFIRRVEERFTTKEG-  975
              +  G+ VDLE+MTY+EVV R +ELMY+ H  RWID S K+L  D ++RVEER    +  
Sbjct  181   VDQHGDPVDLEEMTYSEVVRRFLELMYLPHTGRWIDPSWKRLFQDLLQRVEERLHPTDHG  240

Query  976   -QASLLQNYSELDTPYPAIDNILAAYPEAATQLINAQDVHHFLLLCQRRGQKPVPFVPAL  1034
                SL +   EL+ P  AI+ + AAYP AATQL++ +D   FL LCQRRGQKPVPFVPAL
Sbjct  241   PIESLFETVEELEDPAEAINTLTAAYPGAATQLLHPEDCAWFLQLCQRRGQKPVPFVPAL  300

Query  1035  DENFEYWFKKDSLWQSEDLEAVVGQDVGRTCILQGPMAAKFSNTIDEPVQQIL  1087
             DE+FE+WFKKDSLWQSEDL+AVV QD  R CIL GP+A ++S   +EPV++IL
Sbjct  301   DEDFEFWFKKDSLWQSEDLDAVVNQDAQRVCILHGPVAVQYSTRANEPVKEIL  353


>CDD:407799 pfam17951, FAS_meander, Fatty acid synthase meander beta sheet 
domain.  This domain is found in fungal fatty acid synthase 
beta chain proteins.
Length=146

 Score = 237 bits (606),  Expect = 1e-72, Method: Composition-based stats.
 Identities = 78/146 (53%), Positives = 101/146 (69%), Gaps = 0/146 (0%)

Query  1150  SGDLPDLDLWLRLLAGKSYSWRHALFLADVFVQGHRFQTNPMKRIVAPTPGMYVEISYPE  1209
                LP  + WL+LLAG   SWR AL  +D  VQG ++Q NP++R+ AP  G  VEI+ P+
Sbjct  1     GSALPSPESWLQLLAGTELSWRRALLTSDTIVQGRKYQDNPIRRLFAPRAGQTVEITNPD  60

Query  1210  EPSKTTICVREPYQSGKLVKTVEVKVNDQGQISLTLFEGRTAEGGVVPLSFLFTYHPEAG  1269
              P KT + V E   SG+LVK VE++ +   +I +TL+E RTA+G  VPL   FTYHPE G
Sbjct  61    SPEKTVVTVFEASASGELVKVVEIRKSGDNEIIVTLYEYRTADGKPVPLPLEFTYHPEMG  120

Query  1270  YAPIREVMDGRNDRIKEFYYRVWFGS  1295
             YAPI EVM+GRNDRIKEFY+++WFG 
Sbjct  121   YAPIHEVMEGRNDRIKEFYWKLWFGD  146


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 200 bits (510),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 102/256 (40%), Gaps = 70/256 (27%)

Query  1691  YVFTGQGSQEQGMGMELYSSSPVAREVWDRADRHFIENYGLSIIDIVKNNPKELTVYFGG  1750
             +VF+GQGSQ  GMGM+L  +SP    V DRAD  F   YG S+ D+++NNP         
Sbjct  2     FVFSGQGSQWAGMGMQLLKTSPAFAAVIDRADEAFKPQYGFSVSDVLRNNP---------  52

Query  1751  PRGKAIRQNYMSMTFETVNADGTIKSEKIFKQINEDTISYTYRSPSGLLSATQFTQPALT  1810
                                                           G L  TQF QPAL 
Sbjct  53    ---------------------------------------------EGTLDGTQFVQPALF  67

Query  1811  LMEKASFEDMRSKGLVQRDSSFAGHSLGEYSALAALADVMPIESLVSVVFYRGLTMQVAV  1870
              M+ A    ++S G   R  +  GHSLGEY+A      + P E+L++ V    L MQ+A 
Sbjct  68    AMQIALAALLQSYG--VRPDAVVGHSLGEYAAAVVAGALSPEEALLAAVLRSRLMMQLAG  125

Query  1871  ERDEQGRSN-------------YSMCAVNPSRISKTFNEQALQYVVENIAEQT-GWLLEI  1916
                                         +P  +  +  ++A++ +VE ++++  G L+E 
Sbjct  126   PGGMAAVELSAEEVEQRWPDDVVGAVVNSPRSVVISGPQEAVRELVERVSKEGVGALVEN  185

Query  1917  VNYNVANMQYVAAGDV  1932
             VNY V + Q  A    
Sbjct  186   VNYAVHSPQMDAIAPA  201


>CDD:407694 pfam17828, FAS_N, N-terminal domain in fatty acid synthase subunit 
beta.  This entry represents the N-terminal domain found 
in fatty acid synthase proteins.
Length=127

 Score = 145 bits (367),  Expect = 9e-41, Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 85/120 (71%), Gaps = 6/120 (5%)

Query  20   SLRPLILTHGSLEFSFLVPTSLHFYASQLKETFTASLPQPTDELAQDDEPSSVAELVARY  79
            S RPLILTHGSLE S LVP+ L+ +A QL++ FTASLP P++ +A +DEP SV EL+A++
Sbjct  1    STRPLILTHGSLEISILVPSDLYGHAEQLRDEFTASLPIPSEGIADEDEPESVIELLAKF  60

Query  80   IGHVAREVEEGEDDAQGTCLEVLKLALNEFERAFMRGNDVHAVAAALP---GITAKKILV  136
            +G V   +   E D+QG   +VL L LNEFE +++  ND+HAV + LP    + A+K+++
Sbjct  61   LGFVTSSI---ESDSQGQFTDVLLLLLNEFESSYLAKNDIHAVVSNLPKETTLLARKVVI  117


>CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain.  The maoC gene 
is part of a operon with maoA which is involved in the synthesis 
of monoamine oxidase. The MaoC protein is found to share 
similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 
4, peroxisomal hydratase-dehydrogenase-epimerase, 
fatty acid synthase beta subunit. Several bacterial proteins 
that are composed solely of this domain have (R)-specific 
enoyl-CoA hydratase activity. This domain is also present 
in the NodN nodulation protein N.
Length=123

 Score = 143 bits (363),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 56/130 (43%), Gaps = 9/130 (7%)

Query  1545  RNGTSIEQPVYFENPIPLSGKTPLVLRAPASNETYARVSGDYNPIHVSRVFSSYANLPGT  1604
                 +  +P   E P  ++          A    +A VSGD+NPIHV   F+  A   G 
Sbjct  1     DFQNAPGEPPDTEKPRTVT---------EADIALFALVSGDHNPIHVDPEFAKKAGFGGP  51

Query  1605  ITHGMYTSAAVRSFVETWAAENNIGRVRGFHVSLVGMVLPNDMITVKLQHVGMVAGRKII  1664
             I HGM T A V   VE W  +N I R     V     V P D +  + + VG   GR+  
Sbjct  52    IAHGMLTLAIVAGLVEEWGGDNVIARFGEIKVRFTKPVFPGDTLRTEAEVVGKRDGRQTK  111

Query  1665  KVEASNKETE  1674
              VE + + TE
Sbjct  112   VVEVTVEVTE  121


>CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflatoxin biosynthesis. 
 SAT is the N-terminal starter unit:ACP transacylase 
of the aflatoxin biosynthesis pathway. SAT selects the 
hexanoyl starter unit from a pair of specialized fungal fatty 
acid synthase subunits (HexA/HexB) and transfers it onto the 
polyketide synthase A acyl-carrier protein to prime polyketide 
chain elongation. The family is found in association with 
pfam02801, pfam00109, pfam00550, pfam00975, pfam00698.
Length=239

 Score = 115 bits (290),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 54/274 (20%), Positives = 101/274 (37%), Gaps = 41/274 (15%)

Query  172  VFGGQGNIEEYFDELREIYT-TYPSFVEDLISSSADLLQQ-LSREPEASKLYPKGLDVIQ  229
            +FG Q    ++   LR++        +   +  +AD L+  +SR P A +     L    
Sbjct  2    LFGDQTL--DFLPGLRQLLRAKDNPLLASFLERAADALRAEISRLPRAER---DSLPRFT  56

Query  230  WLQDRDSQPDTDYLVAAPVSLPLIGLVQLAHFVVTCKVLGRQPGEILERF-SGTTGHSQG  288
             LQ+   +          +   L+ + QL HF+     L     +      +   G   G
Sbjct  57   SLQELLERYYASGDKNPALESALLCIAQLGHFIDY---LEENGEDYPSPSSTYLVGLCTG  113

Query  289  VVTAAAIASATTWESFAKAAKDALTMLFWIGLRSQQAYPRTSIAPSVLQDSIENGEGVPT  348
            ++ AAA++ + +       A +A+ + F +GL  Q+      +  S             +
Sbjct  114  LLAAAAVSCSRSLSELVPLAVEAVRIAFRLGLLVQRV--ADRLEGS--------SSSPGS  163

Query  349  PMLSIRDLPRSAVQEHIDTTNQH--LPVDRHISISLVNSARNFVVTGPPLSLYGLNLRLR  406
              L +  L     ++ ++  N+   +P      IS V+ + +  ++GPP +   L L L 
Sbjct  164  WSLVVPGLSEEEAEKALEQFNESKGIPPASRPYISAVSPS-SVTISGPPST---LELLLS  219

Query  407  KVKAPTGLDQNRVPFTQRKVRFVNRFLPITAPFH  440
               A   L +                LPI AP+H
Sbjct  220  SSPAKKSLPKTP--------------LPIYAPYH  239


>CDD:433220 pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase. 
 It is clear from the structures of bacterial members of 
MaoC dehydratase, pfam01575, that the full-length functional 
dehydratase enzyme is made up of two structures that dimerize 
to form a whole. Divergence of the N- and C- monomers in 
higher eukaryotes has led to two distinct domains, this one 
and MaoC_dehydratas. However, in order to function as an enzyme 
both are required together.
Length=132

 Score = 96.6 bits (241),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 34/132 (26%), Positives = 56/132 (42%), Gaps = 16/132 (12%)

Query  1308  FSGGRETITAQAVADFVHAVGNTGEAFVDRPGK------EVFAPMDFAIVVGWKAITKPI  1361
             F   +  +   A+ +F  A+G T  A+ D          ++ AP  F  V+GW A   P 
Sbjct  7     FGPVKYEVERGAIREFARAIGETNPAYWDEAAARAAGYGDLPAPPTFLFVLGWDA---PG  63

Query  1362  FPRTIDGDLLKLVHLSNGFKMVPGAQPLKVGDVLDTTAQINAVINQDS---GKMVEVCGT  1418
             F   +  DL +L+H    F      +PL+ GD L   +QI  V ++        V V   
Sbjct  64    FMEQLGIDLSRLLHGEQRFTY---HRPLRAGDELTCRSQIADVYDKKGNGALCFVVVETE  120

Query  1419  I-HRDGQPIMHV  1429
             + ++ G+P+   
Sbjct  121   VTNQRGEPVATR  132



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2428495298


Query= TCONS_00026527

Length=2092
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369827 pfam08354, DUF1729, Domain of unknown function (DUF172...  577     0.0  
CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          250     6e-75
CDD:407799 pfam17951, FAS_meander, Fatty acid synthase meander be...  237     1e-72
CDD:407694 pfam17828, FAS_N, N-terminal domain in fatty acid synt...  145     1e-40
CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain. The maoC...  144     2e-40
CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflat...  115     5e-29
CDD:433220 pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC de...  97.0    8e-24


>CDD:369827 pfam08354, DUF1729, Domain of unknown function (DUF1729).  This 
domain of unknown function is found in fatty acid synthase 
beta subunits together with the MaoC-like domain (pfam01575) 
and the Acyltransferase domain (pfam00698). The domain has 
been identified in fungi and bacteria.
Length=353

 Score = 577 bits (1489),  Expect = 0.0, Method: Composition-based stats.
 Identities = 207/353 (59%), Positives = 254/353 (72%), Gaps = 3/353 (1%)

Query  738   PVILQWTGGRGGGHHSFEDFHQPILQMYSRIRRCENIVLVAGSGFGGAEDTYPYLSGAWS  797
             P+ILQWTGGR GGHHS EDFH P+L  Y+RIR  +N+VLV GSGFG  ED  PYL+G WS
Sbjct  1     PIILQWTGGRAGGHHSNEDFHAPLLATYARIREQDNVVLVVGSGFGDPEDGAPYLTGEWS  60

Query  798   SSFGYPPMPFDGCLFGSRLMIAKEAHTSKNAKKAIADAPGLDDKDWEKTYKGPAGGVVTV  857
               FG PPMP DG L GSR M+AKEAHTS   K+ I + PG  D +W+ TY  PAGGVV+V
Sbjct  61    QRFGLPPMPVDGILLGSRAMVAKEAHTSDEVKQLIVETPGCKDDEWQATYGKPAGGVVSV  120

Query  858   LSEMGEPIHKLATRGVLFWHEMDQKIFKL-DKAKRVPELKKQRDYIIKKLNDDFQKVWFG  916
              SE+GEPIHK+A R    W E+D+ IF L    KR   L+K+RD II++LN D+QK WF 
Sbjct  121   RSELGEPIHKIANRAARLWRELDETIFSLAPVEKRGAALRKKRDEIIERLNKDYQKPWFA  180

Query  917   RNAAGEAVDLEDMTYAEVVHRMVELMYVKHESRWIDASLKKLTGDFIRRVEERFTTKEG-  975
              +  G+ VDLE+MTY+EVV R +ELMY+ H  RWID S K+L  D ++RVEER    +  
Sbjct  181   VDQHGDPVDLEEMTYSEVVRRFLELMYLPHTGRWIDPSWKRLFQDLLQRVEERLHPTDHG  240

Query  976   -QASLLQNYSELDTPYPAIDNILAAYPEAATQLINAQDVHHFLLLCQRRGQKPVPFVPAL  1034
                SL +   EL+ P  AI+ + AAYP AATQL++ +D   FL LCQRRGQKPVPFVPAL
Sbjct  241   PIESLFETVEELEDPAEAINTLTAAYPGAATQLLHPEDCAWFLQLCQRRGQKPVPFVPAL  300

Query  1035  DENFEYWFKKDSLWQSEDLEAVVGQDVGRTCILQGPMAAKFSNTIDEPVQQIL  1087
             DE+FE+WFKKDSLWQSEDL+AVV QD  R CIL GP+A ++S   +EPV++IL
Sbjct  301   DEDFEFWFKKDSLWQSEDLDAVVNQDAQRVCILHGPVAVQYSTRANEPVKEIL  353


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 250 bits (641),  Expect = 6e-75, Method: Composition-based stats.
 Identities = 93/388 (24%), Positives = 142/388 (37%), Gaps = 87/388 (22%)

Query  1691  YVFTGQGSQEQGMGMELYSSSPVAREVWDRADRHFIENYGLSIIDIVKNNPKELTVYFGG  1750
             +VF+GQGSQ  GMGM+L  +SP    V DRAD  F   YG S+ D+++NNP         
Sbjct  2     FVFSGQGSQWAGMGMQLLKTSPAFAAVIDRADEAFKPQYGFSVSDVLRNNP---------  52

Query  1751  PRGKAIRQNYMSMTFETVNADGTIKSEKIFKQINEDTISYTYRSPSGLLSATQFTQPALT  1810
                                                           G L  TQF QPAL 
Sbjct  53    ---------------------------------------------EGTLDGTQFVQPALF  67

Query  1811  LMEKASFEDMRSKGLVQRDSSFAGHSLGEYSALAALADVMPIESLVSVVFYRGLTMQVAV  1870
              M+ A    ++S G   R  +  GHSLGEY+A      + P E+L++ V    L MQ+A 
Sbjct  68    AMQIALAALLQSYG--VRPDAVVGHSLGEYAAAVVAGALSPEEALLAAVLRSRLMMQLAG  125

Query  1871  ERDEQGRSN-------------YSMCAVNPSRISKTFNEQALQYVVENIAEQT-GWLLEI  1916
                                         +P  +  +  ++A++ +VE ++++  G L+E 
Sbjct  126   PGGMAAVELSAEEVEQRWPDDVVGAVVNSPRSVVISGPQEAVRELVERVSKEGVGALVEN  185

Query  1917  VNYNVANMQYVAAGDLRALDCLTNLLNYLKAQNIDIPALMQSMSLDD-LKAHLVKIIHEC  1975
             VNY V + Q  A                 +   I       S S+D   +  L       
Sbjct  186   VNYAVHSPQMDAIAPALLSALADIAPRTPRVPFIS------STSIDPSDQRTLSAEYWVR  239

Query  1976  VKQTESKPRPIVLERGFATIPLKGIDVPFHSTFLRSGVKPFRSFLLKKINKTTIDPSKLI  2035
               ++  +    +L       PL  I++  H   L + +   +S        +    + L+
Sbjct  240   NLRSPVRFAEAILSA-AEPGPLVFIEISPHPLLLAALIDTLKS-------ASDGKVATLV  291

Query  2036  GKYIPNVTARPFEITKEYFEDVYRLTNS  2063
             G  I + T   F +T  Y   V  LT S
Sbjct  292   GTLIRDQTD--FLVTFLYILAVAHLTGS  317


>CDD:407799 pfam17951, FAS_meander, Fatty acid synthase meander beta sheet 
domain.  This domain is found in fungal fatty acid synthase 
beta chain proteins.
Length=146

 Score = 237 bits (606),  Expect = 1e-72, Method: Composition-based stats.
 Identities = 78/146 (53%), Positives = 101/146 (69%), Gaps = 0/146 (0%)

Query  1150  SGDLPDLDLWLRLLAGKSYSWRHALFLADVFVQGHRFQTNPMKRIVAPTPGMYVEISYPE  1209
                LP  + WL+LLAG   SWR AL  +D  VQG ++Q NP++R+ AP  G  VEI+ P+
Sbjct  1     GSALPSPESWLQLLAGTELSWRRALLTSDTIVQGRKYQDNPIRRLFAPRAGQTVEITNPD  60

Query  1210  EPSKTTICVREPYQSGKLVKTVEVKVNDQGQISLTLFEGRTAEGGVVPLSFLFTYHPEAG  1269
              P KT + V E   SG+LVK VE++ +   +I +TL+E RTA+G  VPL   FTYHPE G
Sbjct  61    SPEKTVVTVFEASASGELVKVVEIRKSGDNEIIVTLYEYRTADGKPVPLPLEFTYHPEMG  120

Query  1270  YAPIREVMDGRNDRIKEFYYRVWFGS  1295
             YAPI EVM+GRNDRIKEFY+++WFG 
Sbjct  121   YAPIHEVMEGRNDRIKEFYWKLWFGD  146


>CDD:407694 pfam17828, FAS_N, N-terminal domain in fatty acid synthase subunit 
beta.  This entry represents the N-terminal domain found 
in fatty acid synthase proteins.
Length=127

 Score = 145 bits (367),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 85/120 (71%), Gaps = 6/120 (5%)

Query  20   SLRPLILTHGSLEFSFLVPTSLHFYASQLKETFTASLPQPTDELAQDDEPSSVAELVARY  79
            S RPLILTHGSLE S LVP+ L+ +A QL++ FTASLP P++ +A +DEP SV EL+A++
Sbjct  1    STRPLILTHGSLEISILVPSDLYGHAEQLRDEFTASLPIPSEGIADEDEPESVIELLAKF  60

Query  80   IGHVAREVEEGEDDAQGTCLEVLKLALNEFERAFMRGNDVHAVAAALP---GITAKKILV  136
            +G V   +   E D+QG   +VL L LNEFE +++  ND+HAV + LP    + A+K+++
Sbjct  61   LGFVTSSI---ESDSQGQFTDVLLLLLNEFESSYLAKNDIHAVVSNLPKETTLLARKVVI  117


>CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain.  The maoC gene 
is part of a operon with maoA which is involved in the synthesis 
of monoamine oxidase. The MaoC protein is found to share 
similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 
4, peroxisomal hydratase-dehydrogenase-epimerase, 
fatty acid synthase beta subunit. Several bacterial proteins 
that are composed solely of this domain have (R)-specific 
enoyl-CoA hydratase activity. This domain is also present 
in the NodN nodulation protein N.
Length=123

 Score = 144 bits (364),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 56/130 (43%), Gaps = 9/130 (7%)

Query  1545  RNGTSIEQPVYFENPIPLSGKTPLVLRAPASNETYARVSGDYNPIHVSRVFSSYANLPGT  1604
                 +  +P   E P  ++          A    +A VSGD+NPIHV   F+  A   G 
Sbjct  1     DFQNAPGEPPDTEKPRTVT---------EADIALFALVSGDHNPIHVDPEFAKKAGFGGP  51

Query  1605  ITHGMYTSAAVRSFVETWAAENNIGRVRGFHVSLVGMVLPNDMITVKLQHVGMVAGRKII  1664
             I HGM T A V   VE W  +N I R     V     V P D +  + + VG   GR+  
Sbjct  52    IAHGMLTLAIVAGLVEEWGGDNVIARFGEIKVRFTKPVFPGDTLRTEAEVVGKRDGRQTK  111

Query  1665  KVEASNKETE  1674
              VE + + TE
Sbjct  112   VVEVTVEVTE  121


>CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflatoxin biosynthesis. 
 SAT is the N-terminal starter unit:ACP transacylase 
of the aflatoxin biosynthesis pathway. SAT selects the 
hexanoyl starter unit from a pair of specialized fungal fatty 
acid synthase subunits (HexA/HexB) and transfers it onto the 
polyketide synthase A acyl-carrier protein to prime polyketide 
chain elongation. The family is found in association with 
pfam02801, pfam00109, pfam00550, pfam00975, pfam00698.
Length=239

 Score = 115 bits (291),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 54/274 (20%), Positives = 101/274 (37%), Gaps = 41/274 (15%)

Query  172  VFGGQGNIEEYFDELREIYT-TYPSFVEDLISSSADLLQQ-LSREPEASKLYPKGLDVIQ  229
            +FG Q    ++   LR++        +   +  +AD L+  +SR P A +     L    
Sbjct  2    LFGDQTL--DFLPGLRQLLRAKDNPLLASFLERAADALRAEISRLPRAER---DSLPRFT  56

Query  230  WLQDRDSQPDTDYLVAAPVSLPLIGLVQLAHFVVTCKVLGRQPGEILERF-SGTTGHSQG  288
             LQ+   +          +   L+ + QL HF+     L     +      +   G   G
Sbjct  57   SLQELLERYYASGDKNPALESALLCIAQLGHFIDY---LEENGEDYPSPSSTYLVGLCTG  113

Query  289  VVTAAAIASATTWESFAKAAKDALTMLFWIGLRSQQAYPRTSIAPSVLQDSIENGEGVPT  348
            ++ AAA++ + +       A +A+ + F +GL  Q+      +  S             +
Sbjct  114  LLAAAAVSCSRSLSELVPLAVEAVRIAFRLGLLVQRV--ADRLEGS--------SSSPGS  163

Query  349  PMLSIRDLPRSAVQEHIDTTNQH--LPVDRHISISLVNSARNFVVTGPPLSLYGLNLRLR  406
              L +  L     ++ ++  N+   +P      IS V+ + +  ++GPP +   L L L 
Sbjct  164  WSLVVPGLSEEEAEKALEQFNESKGIPPASRPYISAVSPS-SVTISGPPST---LELLLS  219

Query  407  KVKAPTGLDQNRVPFTQRKVRFVNRFLPITAPFH  440
               A   L +                LPI AP+H
Sbjct  220  SSPAKKSLPKTP--------------LPIYAPYH  239


>CDD:433220 pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase. 
 It is clear from the structures of bacterial members of 
MaoC dehydratase, pfam01575, that the full-length functional 
dehydratase enzyme is made up of two structures that dimerize 
to form a whole. Divergence of the N- and C- monomers in 
higher eukaryotes has led to two distinct domains, this one 
and MaoC_dehydratas. However, in order to function as an enzyme 
both are required together.
Length=132

 Score = 97.0 bits (242),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 34/132 (26%), Positives = 56/132 (42%), Gaps = 16/132 (12%)

Query  1308  FSGGRETITAQAVADFVHAVGNTGEAFVDRPGK------EVFAPMDFAIVVGWKAITKPI  1361
             F   +  +   A+ +F  A+G T  A+ D          ++ AP  F  V+GW A   P 
Sbjct  7     FGPVKYEVERGAIREFARAIGETNPAYWDEAAARAAGYGDLPAPPTFLFVLGWDA---PG  63

Query  1362  FPRTIDGDLLKLVHLSNGFKMVPGAQPLKVGDVLDTTAQINAVINQDS---GKMVEVCGT  1418
             F   +  DL +L+H    F      +PL+ GD L   +QI  V ++        V V   
Sbjct  64    FMEQLGIDLSRLLHGEQRFTY---HRPLRAGDELTCRSQIADVYDKKGNGALCFVVVETE  120

Query  1419  I-HRDGQPIMHV  1429
             + ++ G+P+   
Sbjct  121   VTNQRGEPVATR  132



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2623512826


Query= TCONS_00026528

Length=2090
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369827 pfam08354, DUF1729, Domain of unknown function (DUF172...  577     0.0  
CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          251     5e-75
CDD:407799 pfam17951, FAS_meander, Fatty acid synthase meander be...  237     1e-72
CDD:407694 pfam17828, FAS_N, N-terminal domain in fatty acid synt...  145     1e-40
CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain. The maoC...  144     2e-40
CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflat...  115     5e-29
CDD:433220 pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC de...  97.0    8e-24


>CDD:369827 pfam08354, DUF1729, Domain of unknown function (DUF1729).  This 
domain of unknown function is found in fatty acid synthase 
beta subunits together with the MaoC-like domain (pfam01575) 
and the Acyltransferase domain (pfam00698). The domain has 
been identified in fungi and bacteria.
Length=353

 Score = 577 bits (1489),  Expect = 0.0, Method: Composition-based stats.
 Identities = 207/353 (59%), Positives = 254/353 (72%), Gaps = 3/353 (1%)

Query  738   PVILQWTGGRGGGHHSFEDFHQPILQMYSRIRRCENIVLVAGSGFGGAEDTYPYLSGAWS  797
             P+ILQWTGGR GGHHS EDFH P+L  Y+RIR  +N+VLV GSGFG  ED  PYL+G WS
Sbjct  1     PIILQWTGGRAGGHHSNEDFHAPLLATYARIREQDNVVLVVGSGFGDPEDGAPYLTGEWS  60

Query  798   SSFGYPPMPFDGCLFGSRLMIAKEAHTSKNAKKAIADAPGLDDKDWEKTYKGPAGGVVTV  857
               FG PPMP DG L GSR M+AKEAHTS   K+ I + PG  D +W+ TY  PAGGVV+V
Sbjct  61    QRFGLPPMPVDGILLGSRAMVAKEAHTSDEVKQLIVETPGCKDDEWQATYGKPAGGVVSV  120

Query  858   LSEMGEPIHKLATRGVLFWHEMDQKIFKL-DKAKRVPELKKQRDYIIKKLNDDFQKVWFG  916
              SE+GEPIHK+A R    W E+D+ IF L    KR   L+K+RD II++LN D+QK WF 
Sbjct  121   RSELGEPIHKIANRAARLWRELDETIFSLAPVEKRGAALRKKRDEIIERLNKDYQKPWFA  180

Query  917   RNAAGEAVDLEDMTYAEVVHRMVELMYVKHESRWIDASLKKLTGDFIRRVEERFTTKEG-  975
              +  G+ VDLE+MTY+EVV R +ELMY+ H  RWID S K+L  D ++RVEER    +  
Sbjct  181   VDQHGDPVDLEEMTYSEVVRRFLELMYLPHTGRWIDPSWKRLFQDLLQRVEERLHPTDHG  240

Query  976   -QASLLQNYSELDTPYPAIDNILAAYPEAATQLINAQDVHHFLLLCQRRGQKPVPFVPAL  1034
                SL +   EL+ P  AI+ + AAYP AATQL++ +D   FL LCQRRGQKPVPFVPAL
Sbjct  241   PIESLFETVEELEDPAEAINTLTAAYPGAATQLLHPEDCAWFLQLCQRRGQKPVPFVPAL  300

Query  1035  DENFEYWFKKDSLWQSEDLEAVVGQDVGRTCILQGPMAAKFSNTIDEPVQQIL  1087
             DE+FE+WFKKDSLWQSEDL+AVV QD  R CIL GP+A ++S   +EPV++IL
Sbjct  301   DEDFEFWFKKDSLWQSEDLDAVVNQDAQRVCILHGPVAVQYSTRANEPVKEIL  353


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 251 bits (642),  Expect = 5e-75, Method: Composition-based stats.
 Identities = 93/388 (24%), Positives = 142/388 (37%), Gaps = 87/388 (22%)

Query  1691  YVFTGQGSQEQGMGMELYSSSPVAREVWDRADRHFIENYGLSIIDIVKNNPKELTVYFGG  1750
             +VF+GQGSQ  GMGM+L  +SP    V DRAD  F   YG S+ D+++NNP         
Sbjct  2     FVFSGQGSQWAGMGMQLLKTSPAFAAVIDRADEAFKPQYGFSVSDVLRNNP---------  52

Query  1751  PRGKAIRQNYMSMTFETVNADGTIKSEKIFKQINEDTISYTYRSPSGLLSATQFTQPALT  1810
                                                           G L  TQF QPAL 
Sbjct  53    ---------------------------------------------EGTLDGTQFVQPALF  67

Query  1811  LMEKASFEDMRSKGLVQRDSSFAGHSLGEYSALAALADVMPIESLVSVVFYRGLTMQVAV  1870
              M+ A    ++S G   R  +  GHSLGEY+A      + P E+L++ V    L MQ+A 
Sbjct  68    AMQIALAALLQSYG--VRPDAVVGHSLGEYAAAVVAGALSPEEALLAAVLRSRLMMQLAG  125

Query  1871  ERDEQGRSN-------------YSMCAVNPSRISKTFNEQALQYVVENIAEQT-GWLLEI  1916
                                         +P  +  +  ++A++ +VE ++++  G L+E 
Sbjct  126   PGGMAAVELSAEEVEQRWPDDVVGAVVNSPRSVVISGPQEAVRELVERVSKEGVGALVEN  185

Query  1917  VNYNVANMQYVAAGDLRALDCLTNLLNYLKAQNIDIPALMQSMSLDD-LKAHLVKIIHEC  1975
             VNY V + Q  A                 +   I       S S+D   +  L       
Sbjct  186   VNYAVHSPQMDAIAPALLSALADIAPRTPRVPFIS------STSIDPSDQRTLSAEYWVR  239

Query  1976  VKQTESKPRPIVLERGFATIPLKGIDVPFHSTFLRSGVKPFRSFLLKKINKTTIDPSKLI  2035
               ++  +    +L       PL  I++  H   L + +   +S        +    + L+
Sbjct  240   NLRSPVRFAEAILSA-AEPGPLVFIEISPHPLLLAALIDTLKS-------ASDGKVATLV  291

Query  2036  GKYIPNVTARPFEITKEYFEDVYRLTNS  2063
             G  I + T   F +T  Y   V  LT S
Sbjct  292   GTLIRDQTD--FLVTFLYILAVAHLTGS  317


>CDD:407799 pfam17951, FAS_meander, Fatty acid synthase meander beta sheet 
domain.  This domain is found in fungal fatty acid synthase 
beta chain proteins.
Length=146

 Score = 237 bits (606),  Expect = 1e-72, Method: Composition-based stats.
 Identities = 78/146 (53%), Positives = 101/146 (69%), Gaps = 0/146 (0%)

Query  1150  SGDLPDLDLWLRLLAGKSYSWRHALFLADVFVQGHRFQTNPMKRIVAPTPGMYVEISYPE  1209
                LP  + WL+LLAG   SWR AL  +D  VQG ++Q NP++R+ AP  G  VEI+ P+
Sbjct  1     GSALPSPESWLQLLAGTELSWRRALLTSDTIVQGRKYQDNPIRRLFAPRAGQTVEITNPD  60

Query  1210  EPSKTTICVREPYQSGKLVKTVEVKVNDQGQISLTLFEGRTAEGGVVPLSFLFTYHPEAG  1269
              P KT + V E   SG+LVK VE++ +   +I +TL+E RTA+G  VPL   FTYHPE G
Sbjct  61    SPEKTVVTVFEASASGELVKVVEIRKSGDNEIIVTLYEYRTADGKPVPLPLEFTYHPEMG  120

Query  1270  YAPIREVMDGRNDRIKEFYYRVWFGS  1295
             YAPI EVM+GRNDRIKEFY+++WFG 
Sbjct  121   YAPIHEVMEGRNDRIKEFYWKLWFGD  146


>CDD:407694 pfam17828, FAS_N, N-terminal domain in fatty acid synthase subunit 
beta.  This entry represents the N-terminal domain found 
in fatty acid synthase proteins.
Length=127

 Score = 145 bits (367),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 85/120 (71%), Gaps = 6/120 (5%)

Query  20   SLRPLILTHGSLEFSFLVPTSLHFYASQLKETFTASLPQPTDELAQDDEPSSVAELVARY  79
            S RPLILTHGSLE S LVP+ L+ +A QL++ FTASLP P++ +A +DEP SV EL+A++
Sbjct  1    STRPLILTHGSLEISILVPSDLYGHAEQLRDEFTASLPIPSEGIADEDEPESVIELLAKF  60

Query  80   IGHVAREVEEGEDDAQGTCLEVLKLALNEFERAFMRGNDVHAVAAALP---GITAKKILV  136
            +G V   +   E D+QG   +VL L LNEFE +++  ND+HAV + LP    + A+K+++
Sbjct  61   LGFVTSSI---ESDSQGQFTDVLLLLLNEFESSYLAKNDIHAVVSNLPKETTLLARKVVI  117


>CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain.  The maoC gene 
is part of a operon with maoA which is involved in the synthesis 
of monoamine oxidase. The MaoC protein is found to share 
similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 
4, peroxisomal hydratase-dehydrogenase-epimerase, 
fatty acid synthase beta subunit. Several bacterial proteins 
that are composed solely of this domain have (R)-specific 
enoyl-CoA hydratase activity. This domain is also present 
in the NodN nodulation protein N.
Length=123

 Score = 144 bits (364),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 56/130 (43%), Gaps = 9/130 (7%)

Query  1545  RNGTSIEQPVYFENPIPLSGKTPLVLRAPASNETYARVSGDYNPIHVSRVFSSYANLPGT  1604
                 +  +P   E P  ++          A    +A VSGD+NPIHV   F+  A   G 
Sbjct  1     DFQNAPGEPPDTEKPRTVT---------EADIALFALVSGDHNPIHVDPEFAKKAGFGGP  51

Query  1605  ITHGMYTSAAVRSFVETWAAENNIGRVRGFHVSLVGMVLPNDMITVKLQHVGMVAGRKII  1664
             I HGM T A V   VE W  +N I R     V     V P D +  + + VG   GR+  
Sbjct  52    IAHGMLTLAIVAGLVEEWGGDNVIARFGEIKVRFTKPVFPGDTLRTEAEVVGKRDGRQTK  111

Query  1665  KVEASNKETE  1674
              VE + + TE
Sbjct  112   VVEVTVEVTE  121


>CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflatoxin biosynthesis. 
 SAT is the N-terminal starter unit:ACP transacylase 
of the aflatoxin biosynthesis pathway. SAT selects the 
hexanoyl starter unit from a pair of specialized fungal fatty 
acid synthase subunits (HexA/HexB) and transfers it onto the 
polyketide synthase A acyl-carrier protein to prime polyketide 
chain elongation. The family is found in association with 
pfam02801, pfam00109, pfam00550, pfam00975, pfam00698.
Length=239

 Score = 115 bits (291),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 54/274 (20%), Positives = 101/274 (37%), Gaps = 41/274 (15%)

Query  172  VFGGQGNIEEYFDELREIYT-TYPSFVEDLISSSADLLQQ-LSREPEASKLYPKGLDVIQ  229
            +FG Q    ++   LR++        +   +  +AD L+  +SR P A +     L    
Sbjct  2    LFGDQTL--DFLPGLRQLLRAKDNPLLASFLERAADALRAEISRLPRAER---DSLPRFT  56

Query  230  WLQDRDSQPDTDYLVAAPVSLPLIGLVQLAHFVVTCKVLGRQPGEILERF-SGTTGHSQG  288
             LQ+   +          +   L+ + QL HF+     L     +      +   G   G
Sbjct  57   SLQELLERYYASGDKNPALESALLCIAQLGHFIDY---LEENGEDYPSPSSTYLVGLCTG  113

Query  289  VVTAAAIASATTWESFAKAAKDALTMLFWIGLRSQQAYPRTSIAPSVLQDSIENGEGVPT  348
            ++ AAA++ + +       A +A+ + F +GL  Q+      +  S             +
Sbjct  114  LLAAAAVSCSRSLSELVPLAVEAVRIAFRLGLLVQRV--ADRLEGS--------SSSPGS  163

Query  349  PMLSIRDLPRSAVQEHIDTTNQH--LPVDRHISISLVNSARNFVVTGPPLSLYGLNLRLR  406
              L +  L     ++ ++  N+   +P      IS V+ + +  ++GPP +   L L L 
Sbjct  164  WSLVVPGLSEEEAEKALEQFNESKGIPPASRPYISAVSPS-SVTISGPPST---LELLLS  219

Query  407  KVKAPTGLDQNRVPFTQRKVRFVNRFLPITAPFH  440
               A   L +                LPI AP+H
Sbjct  220  SSPAKKSLPKTP--------------LPIYAPYH  239


>CDD:433220 pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase. 
 It is clear from the structures of bacterial members of 
MaoC dehydratase, pfam01575, that the full-length functional 
dehydratase enzyme is made up of two structures that dimerize 
to form a whole. Divergence of the N- and C- monomers in 
higher eukaryotes has led to two distinct domains, this one 
and MaoC_dehydratas. However, in order to function as an enzyme 
both are required together.
Length=132

 Score = 97.0 bits (242),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 34/132 (26%), Positives = 56/132 (42%), Gaps = 16/132 (12%)

Query  1308  FSGGRETITAQAVADFVHAVGNTGEAFVDRPGK------EVFAPMDFAIVVGWKAITKPI  1361
             F   +  +   A+ +F  A+G T  A+ D          ++ AP  F  V+GW A   P 
Sbjct  7     FGPVKYEVERGAIREFARAIGETNPAYWDEAAARAAGYGDLPAPPTFLFVLGWDA---PG  63

Query  1362  FPRTIDGDLLKLVHLSNGFKMVPGAQPLKVGDVLDTTAQINAVINQDS---GKMVEVCGT  1418
             F   +  DL +L+H    F      +PL+ GD L   +QI  V ++        V V   
Sbjct  64    FMEQLGIDLSRLLHGEQRFTY---HRPLRAGDELTCRSQIADVYDKKGNGALCFVVVETE  120

Query  1419  I-HRDGQPIMHV  1429
             + ++ G+P+   
Sbjct  121   VTNQRGEPVATR  132



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2620877454


Query= TCONS_00021398

Length=2092
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369827 pfam08354, DUF1729, Domain of unknown function (DUF172...  577     0.0  
CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          250     6e-75
CDD:407799 pfam17951, FAS_meander, Fatty acid synthase meander be...  237     1e-72
CDD:407694 pfam17828, FAS_N, N-terminal domain in fatty acid synt...  145     1e-40
CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain. The maoC...  144     2e-40
CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflat...  115     5e-29
CDD:433220 pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC de...  97.0    8e-24


>CDD:369827 pfam08354, DUF1729, Domain of unknown function (DUF1729).  This 
domain of unknown function is found in fatty acid synthase 
beta subunits together with the MaoC-like domain (pfam01575) 
and the Acyltransferase domain (pfam00698). The domain has 
been identified in fungi and bacteria.
Length=353

 Score = 577 bits (1489),  Expect = 0.0, Method: Composition-based stats.
 Identities = 207/353 (59%), Positives = 254/353 (72%), Gaps = 3/353 (1%)

Query  738   PVILQWTGGRGGGHHSFEDFHQPILQMYSRIRRCENIVLVAGSGFGGAEDTYPYLSGAWS  797
             P+ILQWTGGR GGHHS EDFH P+L  Y+RIR  +N+VLV GSGFG  ED  PYL+G WS
Sbjct  1     PIILQWTGGRAGGHHSNEDFHAPLLATYARIREQDNVVLVVGSGFGDPEDGAPYLTGEWS  60

Query  798   SSFGYPPMPFDGCLFGSRLMIAKEAHTSKNAKKAIADAPGLDDKDWEKTYKGPAGGVVTV  857
               FG PPMP DG L GSR M+AKEAHTS   K+ I + PG  D +W+ TY  PAGGVV+V
Sbjct  61    QRFGLPPMPVDGILLGSRAMVAKEAHTSDEVKQLIVETPGCKDDEWQATYGKPAGGVVSV  120

Query  858   LSEMGEPIHKLATRGVLFWHEMDQKIFKL-DKAKRVPELKKQRDYIIKKLNDDFQKVWFG  916
              SE+GEPIHK+A R    W E+D+ IF L    KR   L+K+RD II++LN D+QK WF 
Sbjct  121   RSELGEPIHKIANRAARLWRELDETIFSLAPVEKRGAALRKKRDEIIERLNKDYQKPWFA  180

Query  917   RNAAGEAVDLEDMTYAEVVHRMVELMYVKHESRWIDASLKKLTGDFIRRVEERFTTKEG-  975
              +  G+ VDLE+MTY+EVV R +ELMY+ H  RWID S K+L  D ++RVEER    +  
Sbjct  181   VDQHGDPVDLEEMTYSEVVRRFLELMYLPHTGRWIDPSWKRLFQDLLQRVEERLHPTDHG  240

Query  976   -QASLLQNYSELDTPYPAIDNILAAYPEAATQLINAQDVHHFLLLCQRRGQKPVPFVPAL  1034
                SL +   EL+ P  AI+ + AAYP AATQL++ +D   FL LCQRRGQKPVPFVPAL
Sbjct  241   PIESLFETVEELEDPAEAINTLTAAYPGAATQLLHPEDCAWFLQLCQRRGQKPVPFVPAL  300

Query  1035  DENFEYWFKKDSLWQSEDLEAVVGQDVGRTCILQGPMAAKFSNTIDEPVQQIL  1087
             DE+FE+WFKKDSLWQSEDL+AVV QD  R CIL GP+A ++S   +EPV++IL
Sbjct  301   DEDFEFWFKKDSLWQSEDLDAVVNQDAQRVCILHGPVAVQYSTRANEPVKEIL  353


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 250 bits (641),  Expect = 6e-75, Method: Composition-based stats.
 Identities = 93/388 (24%), Positives = 142/388 (37%), Gaps = 87/388 (22%)

Query  1691  YVFTGQGSQEQGMGMELYSSSPVAREVWDRADRHFIENYGLSIIDIVKNNPKELTVYFGG  1750
             +VF+GQGSQ  GMGM+L  +SP    V DRAD  F   YG S+ D+++NNP         
Sbjct  2     FVFSGQGSQWAGMGMQLLKTSPAFAAVIDRADEAFKPQYGFSVSDVLRNNP---------  52

Query  1751  PRGKAIRQNYMSMTFETVNADGTIKSEKIFKQINEDTISYTYRSPSGLLSATQFTQPALT  1810
                                                           G L  TQF QPAL 
Sbjct  53    ---------------------------------------------EGTLDGTQFVQPALF  67

Query  1811  LMEKASFEDMRSKGLVQRDSSFAGHSLGEYSALAALADVMPIESLVSVVFYRGLTMQVAV  1870
              M+ A    ++S G   R  +  GHSLGEY+A      + P E+L++ V    L MQ+A 
Sbjct  68    AMQIALAALLQSYG--VRPDAVVGHSLGEYAAAVVAGALSPEEALLAAVLRSRLMMQLAG  125

Query  1871  ERDEQGRSN-------------YSMCAVNPSRISKTFNEQALQYVVENIAEQT-GWLLEI  1916
                                         +P  +  +  ++A++ +VE ++++  G L+E 
Sbjct  126   PGGMAAVELSAEEVEQRWPDDVVGAVVNSPRSVVISGPQEAVRELVERVSKEGVGALVEN  185

Query  1917  VNYNVANMQYVAAGDLRALDCLTNLLNYLKAQNIDIPALMQSMSLDD-LKAHLVKIIHEC  1975
             VNY V + Q  A                 +   I       S S+D   +  L       
Sbjct  186   VNYAVHSPQMDAIAPALLSALADIAPRTPRVPFIS------STSIDPSDQRTLSAEYWVR  239

Query  1976  VKQTESKPRPIVLERGFATIPLKGIDVPFHSTFLRSGVKPFRSFLLKKINKTTIDPSKLI  2035
               ++  +    +L       PL  I++  H   L + +   +S        +    + L+
Sbjct  240   NLRSPVRFAEAILSA-AEPGPLVFIEISPHPLLLAALIDTLKS-------ASDGKVATLV  291

Query  2036  GKYIPNVTARPFEITKEYFEDVYRLTNS  2063
             G  I + T   F +T  Y   V  LT S
Sbjct  292   GTLIRDQTD--FLVTFLYILAVAHLTGS  317


>CDD:407799 pfam17951, FAS_meander, Fatty acid synthase meander beta sheet 
domain.  This domain is found in fungal fatty acid synthase 
beta chain proteins.
Length=146

 Score = 237 bits (606),  Expect = 1e-72, Method: Composition-based stats.
 Identities = 78/146 (53%), Positives = 101/146 (69%), Gaps = 0/146 (0%)

Query  1150  SGDLPDLDLWLRLLAGKSYSWRHALFLADVFVQGHRFQTNPMKRIVAPTPGMYVEISYPE  1209
                LP  + WL+LLAG   SWR AL  +D  VQG ++Q NP++R+ AP  G  VEI+ P+
Sbjct  1     GSALPSPESWLQLLAGTELSWRRALLTSDTIVQGRKYQDNPIRRLFAPRAGQTVEITNPD  60

Query  1210  EPSKTTICVREPYQSGKLVKTVEVKVNDQGQISLTLFEGRTAEGGVVPLSFLFTYHPEAG  1269
              P KT + V E   SG+LVK VE++ +   +I +TL+E RTA+G  VPL   FTYHPE G
Sbjct  61    SPEKTVVTVFEASASGELVKVVEIRKSGDNEIIVTLYEYRTADGKPVPLPLEFTYHPEMG  120

Query  1270  YAPIREVMDGRNDRIKEFYYRVWFGS  1295
             YAPI EVM+GRNDRIKEFY+++WFG 
Sbjct  121   YAPIHEVMEGRNDRIKEFYWKLWFGD  146


>CDD:407694 pfam17828, FAS_N, N-terminal domain in fatty acid synthase subunit 
beta.  This entry represents the N-terminal domain found 
in fatty acid synthase proteins.
Length=127

 Score = 145 bits (367),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 85/120 (71%), Gaps = 6/120 (5%)

Query  20   SLRPLILTHGSLEFSFLVPTSLHFYASQLKETFTASLPQPTDELAQDDEPSSVAELVARY  79
            S RPLILTHGSLE S LVP+ L+ +A QL++ FTASLP P++ +A +DEP SV EL+A++
Sbjct  1    STRPLILTHGSLEISILVPSDLYGHAEQLRDEFTASLPIPSEGIADEDEPESVIELLAKF  60

Query  80   IGHVAREVEEGEDDAQGTCLEVLKLALNEFERAFMRGNDVHAVAAALP---GITAKKILV  136
            +G V   +   E D+QG   +VL L LNEFE +++  ND+HAV + LP    + A+K+++
Sbjct  61   LGFVTSSI---ESDSQGQFTDVLLLLLNEFESSYLAKNDIHAVVSNLPKETTLLARKVVI  117


>CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain.  The maoC gene 
is part of a operon with maoA which is involved in the synthesis 
of monoamine oxidase. The MaoC protein is found to share 
similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 
4, peroxisomal hydratase-dehydrogenase-epimerase, 
fatty acid synthase beta subunit. Several bacterial proteins 
that are composed solely of this domain have (R)-specific 
enoyl-CoA hydratase activity. This domain is also present 
in the NodN nodulation protein N.
Length=123

 Score = 144 bits (364),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 56/130 (43%), Gaps = 9/130 (7%)

Query  1545  RNGTSIEQPVYFENPIPLSGKTPLVLRAPASNETYARVSGDYNPIHVSRVFSSYANLPGT  1604
                 +  +P   E P  ++          A    +A VSGD+NPIHV   F+  A   G 
Sbjct  1     DFQNAPGEPPDTEKPRTVT---------EADIALFALVSGDHNPIHVDPEFAKKAGFGGP  51

Query  1605  ITHGMYTSAAVRSFVETWAAENNIGRVRGFHVSLVGMVLPNDMITVKLQHVGMVAGRKII  1664
             I HGM T A V   VE W  +N I R     V     V P D +  + + VG   GR+  
Sbjct  52    IAHGMLTLAIVAGLVEEWGGDNVIARFGEIKVRFTKPVFPGDTLRTEAEVVGKRDGRQTK  111

Query  1665  KVEASNKETE  1674
              VE + + TE
Sbjct  112   VVEVTVEVTE  121


>CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflatoxin biosynthesis. 
 SAT is the N-terminal starter unit:ACP transacylase 
of the aflatoxin biosynthesis pathway. SAT selects the 
hexanoyl starter unit from a pair of specialized fungal fatty 
acid synthase subunits (HexA/HexB) and transfers it onto the 
polyketide synthase A acyl-carrier protein to prime polyketide 
chain elongation. The family is found in association with 
pfam02801, pfam00109, pfam00550, pfam00975, pfam00698.
Length=239

 Score = 115 bits (291),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 54/274 (20%), Positives = 101/274 (37%), Gaps = 41/274 (15%)

Query  172  VFGGQGNIEEYFDELREIYT-TYPSFVEDLISSSADLLQQ-LSREPEASKLYPKGLDVIQ  229
            +FG Q    ++   LR++        +   +  +AD L+  +SR P A +     L    
Sbjct  2    LFGDQTL--DFLPGLRQLLRAKDNPLLASFLERAADALRAEISRLPRAER---DSLPRFT  56

Query  230  WLQDRDSQPDTDYLVAAPVSLPLIGLVQLAHFVVTCKVLGRQPGEILERF-SGTTGHSQG  288
             LQ+   +          +   L+ + QL HF+     L     +      +   G   G
Sbjct  57   SLQELLERYYASGDKNPALESALLCIAQLGHFIDY---LEENGEDYPSPSSTYLVGLCTG  113

Query  289  VVTAAAIASATTWESFAKAAKDALTMLFWIGLRSQQAYPRTSIAPSVLQDSIENGEGVPT  348
            ++ AAA++ + +       A +A+ + F +GL  Q+      +  S             +
Sbjct  114  LLAAAAVSCSRSLSELVPLAVEAVRIAFRLGLLVQRV--ADRLEGS--------SSSPGS  163

Query  349  PMLSIRDLPRSAVQEHIDTTNQH--LPVDRHISISLVNSARNFVVTGPPLSLYGLNLRLR  406
              L +  L     ++ ++  N+   +P      IS V+ + +  ++GPP +   L L L 
Sbjct  164  WSLVVPGLSEEEAEKALEQFNESKGIPPASRPYISAVSPS-SVTISGPPST---LELLLS  219

Query  407  KVKAPTGLDQNRVPFTQRKVRFVNRFLPITAPFH  440
               A   L +                LPI AP+H
Sbjct  220  SSPAKKSLPKTP--------------LPIYAPYH  239


>CDD:433220 pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase. 
 It is clear from the structures of bacterial members of 
MaoC dehydratase, pfam01575, that the full-length functional 
dehydratase enzyme is made up of two structures that dimerize 
to form a whole. Divergence of the N- and C- monomers in 
higher eukaryotes has led to two distinct domains, this one 
and MaoC_dehydratas. However, in order to function as an enzyme 
both are required together.
Length=132

 Score = 97.0 bits (242),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 34/132 (26%), Positives = 56/132 (42%), Gaps = 16/132 (12%)

Query  1308  FSGGRETITAQAVADFVHAVGNTGEAFVDRPGK------EVFAPMDFAIVVGWKAITKPI  1361
             F   +  +   A+ +F  A+G T  A+ D          ++ AP  F  V+GW A   P 
Sbjct  7     FGPVKYEVERGAIREFARAIGETNPAYWDEAAARAAGYGDLPAPPTFLFVLGWDA---PG  63

Query  1362  FPRTIDGDLLKLVHLSNGFKMVPGAQPLKVGDVLDTTAQINAVINQDS---GKMVEVCGT  1418
             F   +  DL +L+H    F      +PL+ GD L   +QI  V ++        V V   
Sbjct  64    FMEQLGIDLSRLLHGEQRFTY---HRPLRAGDELTCRSQIADVYDKKGNGALCFVVVETE  120

Query  1419  I-HRDGQPIMHV  1429
             + ++ G+P+   
Sbjct  121   VTNQRGEPVATR  132



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2623512826


Query= TCONS_00021399

Length=1944
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369827 pfam08354, DUF1729, Domain of unknown function (DUF172...  576     0.0  
CDD:407799 pfam17951, FAS_meander, Fatty acid synthase meander be...  237     1e-72
CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          200     2e-57
CDD:407694 pfam17828, FAS_N, N-terminal domain in fatty acid synt...  145     9e-41
CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain. The maoC...  143     3e-40
CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflat...  115     5e-29
CDD:433220 pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC de...  96.6    1e-23


>CDD:369827 pfam08354, DUF1729, Domain of unknown function (DUF1729).  This 
domain of unknown function is found in fatty acid synthase 
beta subunits together with the MaoC-like domain (pfam01575) 
and the Acyltransferase domain (pfam00698). The domain has 
been identified in fungi and bacteria.
Length=353

 Score = 576 bits (1486),  Expect = 0.0, Method: Composition-based stats.
 Identities = 207/353 (59%), Positives = 254/353 (72%), Gaps = 3/353 (1%)

Query  738   PVILQWTGGRGGGHHSFEDFHQPILQMYSRIRRCENIVLVAGSGFGGAEDTYPYLSGAWS  797
             P+ILQWTGGR GGHHS EDFH P+L  Y+RIR  +N+VLV GSGFG  ED  PYL+G WS
Sbjct  1     PIILQWTGGRAGGHHSNEDFHAPLLATYARIREQDNVVLVVGSGFGDPEDGAPYLTGEWS  60

Query  798   SSFGYPPMPFDGCLFGSRLMIAKEAHTSKNAKKAIADAPGLDDKDWEKTYKGPAGGVVTV  857
               FG PPMP DG L GSR M+AKEAHTS   K+ I + PG  D +W+ TY  PAGGVV+V
Sbjct  61    QRFGLPPMPVDGILLGSRAMVAKEAHTSDEVKQLIVETPGCKDDEWQATYGKPAGGVVSV  120

Query  858   LSEMGEPIHKLATRGVLFWHEMDQKIFKL-DKAKRVPELKKQRDYIIKKLNDDFQKVWFG  916
              SE+GEPIHK+A R    W E+D+ IF L    KR   L+K+RD II++LN D+QK WF 
Sbjct  121   RSELGEPIHKIANRAARLWRELDETIFSLAPVEKRGAALRKKRDEIIERLNKDYQKPWFA  180

Query  917   RNAAGEAVDLEDMTYAEVVHRMVELMYVKHESRWIDASLKKLTGDFIRRVEERFTTKEG-  975
              +  G+ VDLE+MTY+EVV R +ELMY+ H  RWID S K+L  D ++RVEER    +  
Sbjct  181   VDQHGDPVDLEEMTYSEVVRRFLELMYLPHTGRWIDPSWKRLFQDLLQRVEERLHPTDHG  240

Query  976   -QASLLQNYSELDTPYPAIDNILAAYPEAATQLINAQDVHHFLLLCQRRGQKPVPFVPAL  1034
                SL +   EL+ P  AI+ + AAYP AATQL++ +D   FL LCQRRGQKPVPFVPAL
Sbjct  241   PIESLFETVEELEDPAEAINTLTAAYPGAATQLLHPEDCAWFLQLCQRRGQKPVPFVPAL  300

Query  1035  DENFEYWFKKDSLWQSEDLEAVVGQDVGRTCILQGPMAAKFSNTIDEPVQQIL  1087
             DE+FE+WFKKDSLWQSEDL+AVV QD  R CIL GP+A ++S   +EPV++IL
Sbjct  301   DEDFEFWFKKDSLWQSEDLDAVVNQDAQRVCILHGPVAVQYSTRANEPVKEIL  353


>CDD:407799 pfam17951, FAS_meander, Fatty acid synthase meander beta sheet 
domain.  This domain is found in fungal fatty acid synthase 
beta chain proteins.
Length=146

 Score = 237 bits (606),  Expect = 1e-72, Method: Composition-based stats.
 Identities = 78/146 (53%), Positives = 101/146 (69%), Gaps = 0/146 (0%)

Query  1150  SGDLPDLDLWLRLLAGKSYSWRHALFLADVFVQGHRFQTNPMKRIVAPTPGMYVEISYPE  1209
                LP  + WL+LLAG   SWR AL  +D  VQG ++Q NP++R+ AP  G  VEI+ P+
Sbjct  1     GSALPSPESWLQLLAGTELSWRRALLTSDTIVQGRKYQDNPIRRLFAPRAGQTVEITNPD  60

Query  1210  EPSKTTICVREPYQSGKLVKTVEVKVNDQGQISLTLFEGRTAEGGVVPLSFLFTYHPEAG  1269
              P KT + V E   SG+LVK VE++ +   +I +TL+E RTA+G  VPL   FTYHPE G
Sbjct  61    SPEKTVVTVFEASASGELVKVVEIRKSGDNEIIVTLYEYRTADGKPVPLPLEFTYHPEMG  120

Query  1270  YAPIREVMDGRNDRIKEFYYRVWFGS  1295
             YAPI EVM+GRNDRIKEFY+++WFG 
Sbjct  121   YAPIHEVMEGRNDRIKEFYWKLWFGD  146


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 200 bits (510),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 102/256 (40%), Gaps = 70/256 (27%)

Query  1691  YVFTGQGSQEQGMGMELYSSSPVAREVWDRADRHFIENYGLSIIDIVKNNPKELTVYFGG  1750
             +VF+GQGSQ  GMGM+L  +SP    V DRAD  F   YG S+ D+++NNP         
Sbjct  2     FVFSGQGSQWAGMGMQLLKTSPAFAAVIDRADEAFKPQYGFSVSDVLRNNP---------  52

Query  1751  PRGKAIRQNYMSMTFETVNADGTIKSEKIFKQINEDTISYTYRSPSGLLSATQFTQPALT  1810
                                                           G L  TQF QPAL 
Sbjct  53    ---------------------------------------------EGTLDGTQFVQPALF  67

Query  1811  LMEKASFEDMRSKGLVQRDSSFAGHSLGEYSALAALADVMPIESLVSVVFYRGLTMQVAV  1870
              M+ A    ++S G   R  +  GHSLGEY+A      + P E+L++ V    L MQ+A 
Sbjct  68    AMQIALAALLQSYG--VRPDAVVGHSLGEYAAAVVAGALSPEEALLAAVLRSRLMMQLAG  125

Query  1871  ERDEQGRSN-------------YSMCAVNPSRISKTFNEQALQYVVENIAEQT-GWLLEI  1916
                                         +P  +  +  ++A++ +VE ++++  G L+E 
Sbjct  126   PGGMAAVELSAEEVEQRWPDDVVGAVVNSPRSVVISGPQEAVRELVERVSKEGVGALVEN  185

Query  1917  VNYNVANMQYVAAGDV  1932
             VNY V + Q  A    
Sbjct  186   VNYAVHSPQMDAIAPA  201


>CDD:407694 pfam17828, FAS_N, N-terminal domain in fatty acid synthase subunit 
beta.  This entry represents the N-terminal domain found 
in fatty acid synthase proteins.
Length=127

 Score = 145 bits (367),  Expect = 9e-41, Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 85/120 (71%), Gaps = 6/120 (5%)

Query  20   SLRPLILTHGSLEFSFLVPTSLHFYASQLKETFTASLPQPTDELAQDDEPSSVAELVARY  79
            S RPLILTHGSLE S LVP+ L+ +A QL++ FTASLP P++ +A +DEP SV EL+A++
Sbjct  1    STRPLILTHGSLEISILVPSDLYGHAEQLRDEFTASLPIPSEGIADEDEPESVIELLAKF  60

Query  80   IGHVAREVEEGEDDAQGTCLEVLKLALNEFERAFMRGNDVHAVAAALP---GITAKKILV  136
            +G V   +   E D+QG   +VL L LNEFE +++  ND+HAV + LP    + A+K+++
Sbjct  61   LGFVTSSI---ESDSQGQFTDVLLLLLNEFESSYLAKNDIHAVVSNLPKETTLLARKVVI  117


>CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain.  The maoC gene 
is part of a operon with maoA which is involved in the synthesis 
of monoamine oxidase. The MaoC protein is found to share 
similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 
4, peroxisomal hydratase-dehydrogenase-epimerase, 
fatty acid synthase beta subunit. Several bacterial proteins 
that are composed solely of this domain have (R)-specific 
enoyl-CoA hydratase activity. This domain is also present 
in the NodN nodulation protein N.
Length=123

 Score = 143 bits (363),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 56/130 (43%), Gaps = 9/130 (7%)

Query  1545  RNGTSIEQPVYFENPIPLSGKTPLVLRAPASNETYARVSGDYNPIHVSRVFSSYANLPGT  1604
                 +  +P   E P  ++          A    +A VSGD+NPIHV   F+  A   G 
Sbjct  1     DFQNAPGEPPDTEKPRTVT---------EADIALFALVSGDHNPIHVDPEFAKKAGFGGP  51

Query  1605  ITHGMYTSAAVRSFVETWAAENNIGRVRGFHVSLVGMVLPNDMITVKLQHVGMVAGRKII  1664
             I HGM T A V   VE W  +N I R     V     V P D +  + + VG   GR+  
Sbjct  52    IAHGMLTLAIVAGLVEEWGGDNVIARFGEIKVRFTKPVFPGDTLRTEAEVVGKRDGRQTK  111

Query  1665  KVEASNKETE  1674
              VE + + TE
Sbjct  112   VVEVTVEVTE  121


>CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflatoxin biosynthesis. 
 SAT is the N-terminal starter unit:ACP transacylase 
of the aflatoxin biosynthesis pathway. SAT selects the 
hexanoyl starter unit from a pair of specialized fungal fatty 
acid synthase subunits (HexA/HexB) and transfers it onto the 
polyketide synthase A acyl-carrier protein to prime polyketide 
chain elongation. The family is found in association with 
pfam02801, pfam00109, pfam00550, pfam00975, pfam00698.
Length=239

 Score = 115 bits (290),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 54/274 (20%), Positives = 101/274 (37%), Gaps = 41/274 (15%)

Query  172  VFGGQGNIEEYFDELREIYT-TYPSFVEDLISSSADLLQQ-LSREPEASKLYPKGLDVIQ  229
            +FG Q    ++   LR++        +   +  +AD L+  +SR P A +     L    
Sbjct  2    LFGDQTL--DFLPGLRQLLRAKDNPLLASFLERAADALRAEISRLPRAER---DSLPRFT  56

Query  230  WLQDRDSQPDTDYLVAAPVSLPLIGLVQLAHFVVTCKVLGRQPGEILERF-SGTTGHSQG  288
             LQ+   +          +   L+ + QL HF+     L     +      +   G   G
Sbjct  57   SLQELLERYYASGDKNPALESALLCIAQLGHFIDY---LEENGEDYPSPSSTYLVGLCTG  113

Query  289  VVTAAAIASATTWESFAKAAKDALTMLFWIGLRSQQAYPRTSIAPSVLQDSIENGEGVPT  348
            ++ AAA++ + +       A +A+ + F +GL  Q+      +  S             +
Sbjct  114  LLAAAAVSCSRSLSELVPLAVEAVRIAFRLGLLVQRV--ADRLEGS--------SSSPGS  163

Query  349  PMLSIRDLPRSAVQEHIDTTNQH--LPVDRHISISLVNSARNFVVTGPPLSLYGLNLRLR  406
              L +  L     ++ ++  N+   +P      IS V+ + +  ++GPP +   L L L 
Sbjct  164  WSLVVPGLSEEEAEKALEQFNESKGIPPASRPYISAVSPS-SVTISGPPST---LELLLS  219

Query  407  KVKAPTGLDQNRVPFTQRKVRFVNRFLPITAPFH  440
               A   L +                LPI AP+H
Sbjct  220  SSPAKKSLPKTP--------------LPIYAPYH  239


>CDD:433220 pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase. 
 It is clear from the structures of bacterial members of 
MaoC dehydratase, pfam01575, that the full-length functional 
dehydratase enzyme is made up of two structures that dimerize 
to form a whole. Divergence of the N- and C- monomers in 
higher eukaryotes has led to two distinct domains, this one 
and MaoC_dehydratas. However, in order to function as an enzyme 
both are required together.
Length=132

 Score = 96.6 bits (241),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 34/132 (26%), Positives = 56/132 (42%), Gaps = 16/132 (12%)

Query  1308  FSGGRETITAQAVADFVHAVGNTGEAFVDRPGK------EVFAPMDFAIVVGWKAITKPI  1361
             F   +  +   A+ +F  A+G T  A+ D          ++ AP  F  V+GW A   P 
Sbjct  7     FGPVKYEVERGAIREFARAIGETNPAYWDEAAARAAGYGDLPAPPTFLFVLGWDA---PG  63

Query  1362  FPRTIDGDLLKLVHLSNGFKMVPGAQPLKVGDVLDTTAQINAVINQDS---GKMVEVCGT  1418
             F   +  DL +L+H    F      +PL+ GD L   +QI  V ++        V V   
Sbjct  64    FMEQLGIDLSRLLHGEQRFTY---HRPLRAGDELTCRSQIADVYDKKGNGALCFVVVETE  120

Query  1419  I-HRDGQPIMHV  1429
             + ++ G+P+   
Sbjct  121   VTNQRGEPVATR  132



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0712    0.140     1.90     42.6     43.6 

Effective search space used: 2428495298


Query= TCONS_00026529

Length=1944
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369827 pfam08354, DUF1729, Domain of unknown function (DUF172...  576     0.0  
CDD:407799 pfam17951, FAS_meander, Fatty acid synthase meander be...  237     1e-72
CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          200     2e-57
CDD:407694 pfam17828, FAS_N, N-terminal domain in fatty acid synt...  145     9e-41
CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain. The maoC...  143     3e-40
CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflat...  115     5e-29
CDD:433220 pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC de...  96.6    1e-23


>CDD:369827 pfam08354, DUF1729, Domain of unknown function (DUF1729).  This 
domain of unknown function is found in fatty acid synthase 
beta subunits together with the MaoC-like domain (pfam01575) 
and the Acyltransferase domain (pfam00698). The domain has 
been identified in fungi and bacteria.
Length=353

 Score = 576 bits (1486),  Expect = 0.0, Method: Composition-based stats.
 Identities = 207/353 (59%), Positives = 254/353 (72%), Gaps = 3/353 (1%)

Query  738   PVILQWTGGRGGGHHSFEDFHQPILQMYSRIRRCENIVLVAGSGFGGAEDTYPYLSGAWS  797
             P+ILQWTGGR GGHHS EDFH P+L  Y+RIR  +N+VLV GSGFG  ED  PYL+G WS
Sbjct  1     PIILQWTGGRAGGHHSNEDFHAPLLATYARIREQDNVVLVVGSGFGDPEDGAPYLTGEWS  60

Query  798   SSFGYPPMPFDGCLFGSRLMIAKEAHTSKNAKKAIADAPGLDDKDWEKTYKGPAGGVVTV  857
               FG PPMP DG L GSR M+AKEAHTS   K+ I + PG  D +W+ TY  PAGGVV+V
Sbjct  61    QRFGLPPMPVDGILLGSRAMVAKEAHTSDEVKQLIVETPGCKDDEWQATYGKPAGGVVSV  120

Query  858   LSEMGEPIHKLATRGVLFWHEMDQKIFKL-DKAKRVPELKKQRDYIIKKLNDDFQKVWFG  916
              SE+GEPIHK+A R    W E+D+ IF L    KR   L+K+RD II++LN D+QK WF 
Sbjct  121   RSELGEPIHKIANRAARLWRELDETIFSLAPVEKRGAALRKKRDEIIERLNKDYQKPWFA  180

Query  917   RNAAGEAVDLEDMTYAEVVHRMVELMYVKHESRWIDASLKKLTGDFIRRVEERFTTKEG-  975
              +  G+ VDLE+MTY+EVV R +ELMY+ H  RWID S K+L  D ++RVEER    +  
Sbjct  181   VDQHGDPVDLEEMTYSEVVRRFLELMYLPHTGRWIDPSWKRLFQDLLQRVEERLHPTDHG  240

Query  976   -QASLLQNYSELDTPYPAIDNILAAYPEAATQLINAQDVHHFLLLCQRRGQKPVPFVPAL  1034
                SL +   EL+ P  AI+ + AAYP AATQL++ +D   FL LCQRRGQKPVPFVPAL
Sbjct  241   PIESLFETVEELEDPAEAINTLTAAYPGAATQLLHPEDCAWFLQLCQRRGQKPVPFVPAL  300

Query  1035  DENFEYWFKKDSLWQSEDLEAVVGQDVGRTCILQGPMAAKFSNTIDEPVQQIL  1087
             DE+FE+WFKKDSLWQSEDL+AVV QD  R CIL GP+A ++S   +EPV++IL
Sbjct  301   DEDFEFWFKKDSLWQSEDLDAVVNQDAQRVCILHGPVAVQYSTRANEPVKEIL  353


>CDD:407799 pfam17951, FAS_meander, Fatty acid synthase meander beta sheet 
domain.  This domain is found in fungal fatty acid synthase 
beta chain proteins.
Length=146

 Score = 237 bits (606),  Expect = 1e-72, Method: Composition-based stats.
 Identities = 78/146 (53%), Positives = 101/146 (69%), Gaps = 0/146 (0%)

Query  1150  SGDLPDLDLWLRLLAGKSYSWRHALFLADVFVQGHRFQTNPMKRIVAPTPGMYVEISYPE  1209
                LP  + WL+LLAG   SWR AL  +D  VQG ++Q NP++R+ AP  G  VEI+ P+
Sbjct  1     GSALPSPESWLQLLAGTELSWRRALLTSDTIVQGRKYQDNPIRRLFAPRAGQTVEITNPD  60

Query  1210  EPSKTTICVREPYQSGKLVKTVEVKVNDQGQISLTLFEGRTAEGGVVPLSFLFTYHPEAG  1269
              P KT + V E   SG+LVK VE++ +   +I +TL+E RTA+G  VPL   FTYHPE G
Sbjct  61    SPEKTVVTVFEASASGELVKVVEIRKSGDNEIIVTLYEYRTADGKPVPLPLEFTYHPEMG  120

Query  1270  YAPIREVMDGRNDRIKEFYYRVWFGS  1295
             YAPI EVM+GRNDRIKEFY+++WFG 
Sbjct  121   YAPIHEVMEGRNDRIKEFYWKLWFGD  146


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 200 bits (510),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 102/256 (40%), Gaps = 70/256 (27%)

Query  1691  YVFTGQGSQEQGMGMELYSSSPVAREVWDRADRHFIENYGLSIIDIVKNNPKELTVYFGG  1750
             +VF+GQGSQ  GMGM+L  +SP    V DRAD  F   YG S+ D+++NNP         
Sbjct  2     FVFSGQGSQWAGMGMQLLKTSPAFAAVIDRADEAFKPQYGFSVSDVLRNNP---------  52

Query  1751  PRGKAIRQNYMSMTFETVNADGTIKSEKIFKQINEDTISYTYRSPSGLLSATQFTQPALT  1810
                                                           G L  TQF QPAL 
Sbjct  53    ---------------------------------------------EGTLDGTQFVQPALF  67

Query  1811  LMEKASFEDMRSKGLVQRDSSFAGHSLGEYSALAALADVMPIESLVSVVFYRGLTMQVAV  1870
              M+ A    ++S G   R  +  GHSLGEY+A      + P E+L++ V    L MQ+A 
Sbjct  68    AMQIALAALLQSYG--VRPDAVVGHSLGEYAAAVVAGALSPEEALLAAVLRSRLMMQLAG  125

Query  1871  ERDEQGRSN-------------YSMCAVNPSRISKTFNEQALQYVVENIAEQT-GWLLEI  1916
                                         +P  +  +  ++A++ +VE ++++  G L+E 
Sbjct  126   PGGMAAVELSAEEVEQRWPDDVVGAVVNSPRSVVISGPQEAVRELVERVSKEGVGALVEN  185

Query  1917  VNYNVANMQYVAAGDV  1932
             VNY V + Q  A    
Sbjct  186   VNYAVHSPQMDAIAPA  201


>CDD:407694 pfam17828, FAS_N, N-terminal domain in fatty acid synthase subunit 
beta.  This entry represents the N-terminal domain found 
in fatty acid synthase proteins.
Length=127

 Score = 145 bits (367),  Expect = 9e-41, Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 85/120 (71%), Gaps = 6/120 (5%)

Query  20   SLRPLILTHGSLEFSFLVPTSLHFYASQLKETFTASLPQPTDELAQDDEPSSVAELVARY  79
            S RPLILTHGSLE S LVP+ L+ +A QL++ FTASLP P++ +A +DEP SV EL+A++
Sbjct  1    STRPLILTHGSLEISILVPSDLYGHAEQLRDEFTASLPIPSEGIADEDEPESVIELLAKF  60

Query  80   IGHVAREVEEGEDDAQGTCLEVLKLALNEFERAFMRGNDVHAVAAALP---GITAKKILV  136
            +G V   +   E D+QG   +VL L LNEFE +++  ND+HAV + LP    + A+K+++
Sbjct  61   LGFVTSSI---ESDSQGQFTDVLLLLLNEFESSYLAKNDIHAVVSNLPKETTLLARKVVI  117


>CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain.  The maoC gene 
is part of a operon with maoA which is involved in the synthesis 
of monoamine oxidase. The MaoC protein is found to share 
similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 
4, peroxisomal hydratase-dehydrogenase-epimerase, 
fatty acid synthase beta subunit. Several bacterial proteins 
that are composed solely of this domain have (R)-specific 
enoyl-CoA hydratase activity. This domain is also present 
in the NodN nodulation protein N.
Length=123

 Score = 143 bits (363),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 56/130 (43%), Gaps = 9/130 (7%)

Query  1545  RNGTSIEQPVYFENPIPLSGKTPLVLRAPASNETYARVSGDYNPIHVSRVFSSYANLPGT  1604
                 +  +P   E P  ++          A    +A VSGD+NPIHV   F+  A   G 
Sbjct  1     DFQNAPGEPPDTEKPRTVT---------EADIALFALVSGDHNPIHVDPEFAKKAGFGGP  51

Query  1605  ITHGMYTSAAVRSFVETWAAENNIGRVRGFHVSLVGMVLPNDMITVKLQHVGMVAGRKII  1664
             I HGM T A V   VE W  +N I R     V     V P D +  + + VG   GR+  
Sbjct  52    IAHGMLTLAIVAGLVEEWGGDNVIARFGEIKVRFTKPVFPGDTLRTEAEVVGKRDGRQTK  111

Query  1665  KVEASNKETE  1674
              VE + + TE
Sbjct  112   VVEVTVEVTE  121


>CDD:465005 pfam16073, SAT, Starter unit:ACP transacylase in aflatoxin biosynthesis. 
 SAT is the N-terminal starter unit:ACP transacylase 
of the aflatoxin biosynthesis pathway. SAT selects the 
hexanoyl starter unit from a pair of specialized fungal fatty 
acid synthase subunits (HexA/HexB) and transfers it onto the 
polyketide synthase A acyl-carrier protein to prime polyketide 
chain elongation. The family is found in association with 
pfam02801, pfam00109, pfam00550, pfam00975, pfam00698.
Length=239

 Score = 115 bits (290),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 54/274 (20%), Positives = 101/274 (37%), Gaps = 41/274 (15%)

Query  172  VFGGQGNIEEYFDELREIYT-TYPSFVEDLISSSADLLQQ-LSREPEASKLYPKGLDVIQ  229
            +FG Q    ++   LR++        +   +  +AD L+  +SR P A +     L    
Sbjct  2    LFGDQTL--DFLPGLRQLLRAKDNPLLASFLERAADALRAEISRLPRAER---DSLPRFT  56

Query  230  WLQDRDSQPDTDYLVAAPVSLPLIGLVQLAHFVVTCKVLGRQPGEILERF-SGTTGHSQG  288
             LQ+   +          +   L+ + QL HF+     L     +      +   G   G
Sbjct  57   SLQELLERYYASGDKNPALESALLCIAQLGHFIDY---LEENGEDYPSPSSTYLVGLCTG  113

Query  289  VVTAAAIASATTWESFAKAAKDALTMLFWIGLRSQQAYPRTSIAPSVLQDSIENGEGVPT  348
            ++ AAA++ + +       A +A+ + F +GL  Q+      +  S             +
Sbjct  114  LLAAAAVSCSRSLSELVPLAVEAVRIAFRLGLLVQRV--ADRLEGS--------SSSPGS  163

Query  349  PMLSIRDLPRSAVQEHIDTTNQH--LPVDRHISISLVNSARNFVVTGPPLSLYGLNLRLR  406
              L +  L     ++ ++  N+   +P      IS V+ + +  ++GPP +   L L L 
Sbjct  164  WSLVVPGLSEEEAEKALEQFNESKGIPPASRPYISAVSPS-SVTISGPPST---LELLLS  219

Query  407  KVKAPTGLDQNRVPFTQRKVRFVNRFLPITAPFH  440
               A   L +                LPI AP+H
Sbjct  220  SSPAKKSLPKTP--------------LPIYAPYH  239


>CDD:433220 pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase. 
 It is clear from the structures of bacterial members of 
MaoC dehydratase, pfam01575, that the full-length functional 
dehydratase enzyme is made up of two structures that dimerize 
to form a whole. Divergence of the N- and C- monomers in 
higher eukaryotes has led to two distinct domains, this one 
and MaoC_dehydratas. However, in order to function as an enzyme 
both are required together.
Length=132

 Score = 96.6 bits (241),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 34/132 (26%), Positives = 56/132 (42%), Gaps = 16/132 (12%)

Query  1308  FSGGRETITAQAVADFVHAVGNTGEAFVDRPGK------EVFAPMDFAIVVGWKAITKPI  1361
             F   +  +   A+ +F  A+G T  A+ D          ++ AP  F  V+GW A   P 
Sbjct  7     FGPVKYEVERGAIREFARAIGETNPAYWDEAAARAAGYGDLPAPPTFLFVLGWDA---PG  63

Query  1362  FPRTIDGDLLKLVHLSNGFKMVPGAQPLKVGDVLDTTAQINAVINQDS---GKMVEVCGT  1418
             F   +  DL +L+H    F      +PL+ GD L   +QI  V ++        V V   
Sbjct  64    FMEQLGIDLSRLLHGEQRFTY---HRPLRAGDELTCRSQIADVYDKKGNGALCFVVVETE  120

Query  1419  I-HRDGQPIMHV  1429
             + ++ G+P+   
Sbjct  121   VTNQRGEPVATR  132



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2428495298


Query= TCONS_00026530

Length=1003
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:407799 pfam17951, FAS_meander, Fatty acid synthase meander be...  237     2e-73
CDD:369827 pfam08354, DUF1729, Domain of unknown function (DUF172...  221     6e-65
CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          201     3e-58
CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain. The maoC...  143     1e-40
CDD:433220 pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC de...  97.0    4e-24


>CDD:407799 pfam17951, FAS_meander, Fatty acid synthase meander beta sheet 
domain.  This domain is found in fungal fatty acid synthase 
beta chain proteins.
Length=146

 Score = 237 bits (606),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 78/146 (53%), Positives = 101/146 (69%), Gaps = 0/146 (0%)

Query  209  SGDLPDLDLWLRLLAGKSYSWRHALFLADVFVQGHRFQTNPMKRIVAPTPGMYVEISYPE  268
               LP  + WL+LLAG   SWR AL  +D  VQG ++Q NP++R+ AP  G  VEI+ P+
Sbjct  1    GSALPSPESWLQLLAGTELSWRRALLTSDTIVQGRKYQDNPIRRLFAPRAGQTVEITNPD  60

Query  269  EPSKTTICVREPYQSGKLVKTVEVKVNDQGQISLTLFEGRTAEGGVVPLSFLFTYHPEAG  328
             P KT + V E   SG+LVK VE++ +   +I +TL+E RTA+G  VPL   FTYHPE G
Sbjct  61   SPEKTVVTVFEASASGELVKVVEIRKSGDNEIIVTLYEYRTADGKPVPLPLEFTYHPEMG  120

Query  329  YAPIREVMDGRNDRIKEFYYRVWFGS  354
            YAPI EVM+GRNDRIKEFY+++WFG 
Sbjct  121  YAPIHEVMEGRNDRIKEFYWKLWFGD  146


>CDD:369827 pfam08354, DUF1729, Domain of unknown function (DUF1729).  This 
domain of unknown function is found in fatty acid synthase 
beta subunits together with the MaoC-like domain (pfam01575) 
and the Acyltransferase domain (pfam00698). The domain has 
been identified in fungi and bacteria.
Length=353

 Score = 221 bits (565),  Expect = 6e-65, Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 107/148 (72%), Gaps = 2/148 (1%)

Query  1    MYVKHESRWIDASLKKLTGDFIRRVEERFTTKEG--QASLLQNYSELDTPYPAIDNILAA  58
            MY+ H  RWID S K+L  D ++RVEER    +     SL +   EL+ P  AI+ + AA
Sbjct  206  MYLPHTGRWIDPSWKRLFQDLLQRVEERLHPTDHGPIESLFETVEELEDPAEAINTLTAA  265

Query  59   YPEAATQLINAQDVHHFLLLCQRRGQKPVPFVPALDENFEYWFKKDSLWQSEDLEAVVGQ  118
            YP AATQL++ +D   FL LCQRRGQKPVPFVPALDE+FE+WFKKDSLWQSEDL+AVV Q
Sbjct  266  YPGAATQLLHPEDCAWFLQLCQRRGQKPVPFVPALDEDFEFWFKKDSLWQSEDLDAVVNQ  325

Query  119  DVGRTCILQGPMAAKFSNTIDEPVQQIL  146
            D  R CIL GP+A ++S   +EPV++IL
Sbjct  326  DAQRVCILHGPVAVQYSTRANEPVKEIL  353


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 201 bits (513),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 102/256 (40%), Gaps = 70/256 (27%)

Query  750  YVFTGQGSQEQGMGMELYSSSPVAREVWDRADRHFIENYGLSIIDIVKNNPKELTVYFGG  809
            +VF+GQGSQ  GMGM+L  +SP    V DRAD  F   YG S+ D+++NNP         
Sbjct  2    FVFSGQGSQWAGMGMQLLKTSPAFAAVIDRADEAFKPQYGFSVSDVLRNNP---------  52

Query  810  PRGKAIRQNYMSMTFETVNADGTIKSEKIFKQINEDTISYTYRSPSGLLSATQFTQPALT  869
                                                          G L  TQF QPAL 
Sbjct  53   ---------------------------------------------EGTLDGTQFVQPALF  67

Query  870  LMEKASFEDMRSKGLVQRDSSFAGHSLGEYSALAALADVMPIESLVSVVFYRGLTMQVAV  929
             M+ A    ++S G   R  +  GHSLGEY+A      + P E+L++ V    L MQ+A 
Sbjct  68   AMQIALAALLQSYG--VRPDAVVGHSLGEYAAAVVAGALSPEEALLAAVLRSRLMMQLAG  125

Query  930  ERDEQGRSN-------------YSMCAVNPSRISKTFNEQALQYVVENIAEQT-GWLLEI  975
                                        +P  +  +  ++A++ +VE ++++  G L+E 
Sbjct  126  PGGMAAVELSAEEVEQRWPDDVVGAVVNSPRSVVISGPQEAVRELVERVSKEGVGALVEN  185

Query  976  VNYNVANMQYVAAGDV  991
            VNY V + Q  A    
Sbjct  186  VNYAVHSPQMDAIAPA  201


>CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain.  The maoC gene 
is part of a operon with maoA which is involved in the synthesis 
of monoamine oxidase. The MaoC protein is found to share 
similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 
4, peroxisomal hydratase-dehydrogenase-epimerase, 
fatty acid synthase beta subunit. Several bacterial proteins 
that are composed solely of this domain have (R)-specific 
enoyl-CoA hydratase activity. This domain is also present 
in the NodN nodulation protein N.
Length=123

 Score = 143 bits (363),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 56/130 (43%), Gaps = 9/130 (7%)

Query  604  RNGTSIEQPVYFENPIPLSGKTPLVLRAPASNETYARVSGDYNPIHVSRVFSSYANLPGT  663
                +  +P   E P  ++          A    +A VSGD+NPIHV   F+  A   G 
Sbjct  1    DFQNAPGEPPDTEKPRTVT---------EADIALFALVSGDHNPIHVDPEFAKKAGFGGP  51

Query  664  ITHGMYTSAAVRSFVETWAAENNIGRVRGFHVSLVGMVLPNDMITVKLQHVGMVAGRKII  723
            I HGM T A V   VE W  +N I R     V     V P D +  + + VG   GR+  
Sbjct  52   IAHGMLTLAIVAGLVEEWGGDNVIARFGEIKVRFTKPVFPGDTLRTEAEVVGKRDGRQTK  111

Query  724  KVEASNKETE  733
             VE + + TE
Sbjct  112  VVEVTVEVTE  121


>CDD:433220 pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase. 
 It is clear from the structures of bacterial members of 
MaoC dehydratase, pfam01575, that the full-length functional 
dehydratase enzyme is made up of two structures that dimerize 
to form a whole. Divergence of the N- and C- monomers in 
higher eukaryotes has led to two distinct domains, this one 
and MaoC_dehydratas. However, in order to function as an enzyme 
both are required together.
Length=132

 Score = 97.0 bits (242),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 34/132 (26%), Positives = 56/132 (42%), Gaps = 16/132 (12%)

Query  367  FSGGRETITAQAVADFVHAVGNTGEAFVDRPGK------EVFAPMDFAIVVGWKAITKPI  420
            F   +  +   A+ +F  A+G T  A+ D          ++ AP  F  V+GW A   P 
Sbjct  7    FGPVKYEVERGAIREFARAIGETNPAYWDEAAARAAGYGDLPAPPTFLFVLGWDA---PG  63

Query  421  FPRTIDGDLLKLVHLSNGFKMVPGAQPLKVGDVLDTTAQINAVINQDS---GKMVEVCGT  477
            F   +  DL +L+H    F      +PL+ GD L   +QI  V ++        V V   
Sbjct  64   FMEQLGIDLSRLLHGEQRFTY---HRPLRAGDELTCRSQIADVYDKKGNGALCFVVVETE  120

Query  478  I-HRDGQPIMHV  488
            + ++ G+P+   
Sbjct  121  VTNQRGEPVATR  132



Lambda      K        H        a         alpha
   0.318    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1284199532


Query= TCONS_00021401

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          99.1    2e-25


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 99.1 bits (247),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 36/184 (20%), Positives = 67/184 (36%), Gaps = 18/184 (10%)

Query  1    MCAVNPSRISKTFNEQALQYVVENIAEQT-GWLLEIVNYNVANMQYVAAGDVSALDCLTN  59
                +P  +  +  ++A++ +VE ++++  G L+E VNY V + Q  A            
Sbjct  150  AVVNSPRSVVISGPQEAVRELVERVSKEGVGALVENVNYAVHSPQMDAIAPALLSALADI  209

Query  60   LLNYLKAQNIDIPALMQSMSLDD-LKAHLVKIIHECVKQTESKPRPIVLERGFATIPLKG  118
                 +   I       S S+D   +  L         ++  +    +L       PL  
Sbjct  210  APRTPRVPFIS------STSIDPSDQRTLSAEYWVRNLRSPVRFAEAILSA-AEPGPLVF  262

Query  119  IDVPFHSTFLRSGVKPFRSFLLKKINKTTIDPSKLIGKYIPNVTARPFEITKEYFEDVYR  178
            I++  H   L + +   +S        +    + L+G  I + T   F +T  Y   V  
Sbjct  263  IEISPHPLLLAALIDTLKS-------ASDGKVATLVGTLIRDQTD--FLVTFLYILAVAH  313

Query  179  LTNS  182
            LT S
Sbjct  314  LTGS  317



Lambda      K        H        a         alpha
   0.318    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00021403

Length=571
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309968 pfam05057, DUF676, Putative serine esterase (DUF676). ...  113     3e-29


>CDD:309968 pfam05057, DUF676, Putative serine esterase (DUF676).  This family 
of proteins are probably serine esterase type enzymes 
with an alpha/beta hydrolase fold.
Length=212

 Score = 113 bits (284),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 52/158 (33%), Positives = 74/158 (47%), Gaps = 39/158 (25%)

Query  59   ISFIGHSLGGLVQTYAIAYIQK---HSPEFFNLIRPVNFIALATPFLGLSNENPM-----  110
            ISF+GHSLGGL+  YAI  +         FF  + P+NFI LA+P LG+   +P+     
Sbjct  77   ISFVGHSLGGLIARYAIGKLYDKAMTFKGFFKGLEPMNFITLASPHLGVLGNSPLINWGL  136

Query  111  ----YVRFALDLGLVGRTGQDLGLSWTAPRVRSGWEAVIGGRGTSTKPREHVDHGPKPLL  166
                 ++ +L +G +G+TG+DL L                        ++  D     L 
Sbjct  137  WFLEKLKKSLSMGQLGKTGRDLFL------------------------KDVYDGINSLLY  172

Query  167  RVLPCGPAH---EALSKFDRRTIYSNVVNDGIVPLRTS  201
            ++L          AL  F RR +Y+NVVND I PL TS
Sbjct  173  KLLTDESDLKFISALGAFKRRILYANVVNDYIAPLYTS  210



Lambda      K        H        a         alpha
   0.315    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 715831012


Query= TCONS_00021402

Length=975
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309968 pfam05057, DUF676, Putative serine esterase (DUF676). ...  145     4e-40


>CDD:309968 pfam05057, DUF676, Putative serine esterase (DUF676).  This family 
of proteins are probably serine esterase type enzymes 
with an alpha/beta hydrolase fold.
Length=212

 Score = 145 bits (368),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 85/322 (26%), Positives = 118/322 (37%), Gaps = 129/322 (40%)

Query  299  KKVHLVVLTHGLHSNLGADMLYLKESIDAATKKTQSGASCKLRQHLDPQAPKGVSSLDRS  358
            KK HLVVL HGL  N  ADM Y+ E +             KL                  
Sbjct  3    KKDHLVVLVHGLWGN-SADMEYVAEQL-----------EKKL------------------  32

Query  359  IRDNDSVDQDDIDDEQVIVRGFAGNAVRTERGIQYLGKRLAKYVLFMTYPDQPYRPLKQS  418
                         DE ++    + N  +T +GI  +G+RLA  VL               
Sbjct  33   ------------PDELIVFLMSSNNVSKTFKGIDVMGERLANEVL---------------  65

Query  419  RTKTFTESLGAWKTAKESVINDPSGSRTRADEAEDEHRYYQITSISFIGHSLGGLVQTYA  478
                            E V +   G +                 ISF+GHSLGGL+  YA
Sbjct  66   ----------------EFVQDGSDGKK-----------------ISFVGHSLGGLIARYA  92

Query  479  IAYIQK---HSPEFFNLIRPVNFIALATPFLGLSNENPM---------YVRFALDLGLVG  526
            I  +         FF  + P+NFI LA+P LG+   +P+          ++ +L +G +G
Sbjct  93   IGKLYDKAMTFKGFFKGLEPMNFITLASPHLGVLGNSPLINWGLWFLEKLKKSLSMGQLG  152

Query  527  RTGQDLGLSWTAPRVRSGWEAVIGGRGTSTKPREHVDHGPKPLLRVLPCGPAH---EALS  583
            +TG+DL L                        ++  D     L ++L          AL 
Sbjct  153  KTGRDLFL------------------------KDVYDGINSLLYKLLTDESDLKFISALG  188

Query  584  KFDRRTIYSNVVNDGIVPLRTS  605
             F RR +Y+NVVND I PL TS
Sbjct  189  AFKRRILYANVVNDYIAPLYTS  210



Lambda      K        H        a         alpha
   0.316    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1244555004


Query= TCONS_00021404

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00021405

Length=917
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309968 pfam05057, DUF676, Putative serine esterase (DUF676). ...  145     4e-40


>CDD:309968 pfam05057, DUF676, Putative serine esterase (DUF676).  This family 
of proteins are probably serine esterase type enzymes 
with an alpha/beta hydrolase fold.
Length=212

 Score = 145 bits (368),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 85/322 (26%), Positives = 118/322 (37%), Gaps = 129/322 (40%)

Query  241  KKVHLVVLTHGLHSNLGADMLYLKESIDAATKKTQSGASCKLRQHLDPQAPKGVSSLDRS  300
            KK HLVVL HGL  N  ADM Y+ E +             KL                  
Sbjct  3    KKDHLVVLVHGLWGN-SADMEYVAEQL-----------EKKL------------------  32

Query  301  IRDNDSVDQDDIDDEQVIVRGFAGNAVRTERGIQYLGKRLAKYVLFMTYPDQPYRPLKQS  360
                         DE ++    + N  +T +GI  +G+RLA  VL               
Sbjct  33   ------------PDELIVFLMSSNNVSKTFKGIDVMGERLANEVL---------------  65

Query  361  RTKTFTESLGAWKTAKESVINDPSGSRTRADEAEDEHRYYQITSISFIGHSLGGLVQTYA  420
                            E V +   G +                 ISF+GHSLGGL+  YA
Sbjct  66   ----------------EFVQDGSDGKK-----------------ISFVGHSLGGLIARYA  92

Query  421  IAYIQK---HSPEFFNLIRPVNFIALATPFLGLSNENPM---------YVRFALDLGLVG  468
            I  +         FF  + P+NFI LA+P LG+   +P+          ++ +L +G +G
Sbjct  93   IGKLYDKAMTFKGFFKGLEPMNFITLASPHLGVLGNSPLINWGLWFLEKLKKSLSMGQLG  152

Query  469  RTGQDLGLSWTAPRVRSGWEAVIGGRGTSTKPREHVDHGPKPLLRVLPCGPAH---EALS  525
            +TG+DL L                        ++  D     L ++L          AL 
Sbjct  153  KTGRDLFL------------------------KDVYDGINSLLYKLLTDESDLKFISALG  188

Query  526  KFDRRTIYSNVVNDGIVPLRTS  547
             F RR +Y+NVVND I PL TS
Sbjct  189  AFKRRILYANVVNDYIAPLYTS  210



Lambda      K        H        a         alpha
   0.316    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1179992508


Query= TCONS_00026531

Length=96
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459820 pfam00459, Inositol_P, Inositol monophosphatase family     86.6    9e-23


>CDD:459820 pfam00459, Inositol_P, Inositol monophosphatase family.  
Length=271

 Score = 86.6 bits (215),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 31/92 (34%), Positives = 39/92 (42%), Gaps = 10/92 (11%)

Query  3    RSMRSMGSAALNLCAVACGNLDLYWEGG-CWAWDVCAGWVILTEAGGTIVDGNPGNWEAT  61
              +R +GSAAL L  VA G  D Y E G    WD  AG  IL EAGG + D + G     
Sbjct  187  PGVRRVGSAALKLAMVAAGKADAYIEFGRLKPWDHAAGVAILREAGGVVTDADGG-----  241

Query  62   VDGRKYLAVRG--SPNQAGQKELIEEFWGHIQ  91
                  LA R   +  +   + L       I+
Sbjct  242  --PFDLLAGRVIAANPKVLHELLAAALEEIIE  271



Lambda      K        H        a         alpha
   0.320    0.137    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00021406

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461153 pfam04063, DUF383, Domain of unknown function (DUF383)     300     3e-103
CDD:461154 pfam04064, DUF384, Domain of unknown function (DUF384)     91.7    4e-24 


>CDD:461153 pfam04063, DUF383, Domain of unknown function (DUF383).  
Length=188

 Score = 300 bits (771),  Expect = 3e-103, Method: Composition-based stats.
 Identities = 105/188 (56%), Positives = 139/188 (74%), Gaps = 2/188 (1%)

Query  93   KITNVKEPIADDIAMLFANLAKSDKL-SRLITLKRRTA-ESVSTSTMAIDQLMDCFVKGA  150
            KIT+ K P+AD   ML +NL KSD +   L+ LKR +  E +S+S +AIDQL+D FVKGA
Sbjct  1    KITDPKSPLADLACMLLSNLTKSDSICKSLLELKRSSEPEDLSSSGLAIDQLVDLFVKGA  60

Query  151  EGALNKKANFDYLSYLFADLSKSEIGRAYFTTRQDYDGVVPVTKLTVFTEHESTVRRKGV  210
            +G  NK AN+DYL+Y+FA+LS+   GR YF T Q+YDGVVP++KL VFTEH+S +RR GV
Sbjct  61   DGGYNKHANYDYLAYVFANLSQLPEGRKYFLTPQEYDGVVPLSKLLVFTEHDSVIRRGGV  120

Query  211  ASTIKNVAFDIPFHPTLLSADDANLLPYVLLPITGPEEFSEEESMAMLPDLQLLPPDKRR  270
            ASTIKN  FD   H  LLS ++ ++LPY+LLP+ GPEE+ EE+   + P+LQLLPPDK+R
Sbjct  121  ASTIKNCCFDTEAHEWLLSEEEIDILPYLLLPLAGPEEYDEEDMEKLPPELQLLPPDKKR  180

Query  271  DGDNSIIV  278
            + D  I +
Sbjct  181  EPDPDIRL  188


>CDD:461154 pfam04064, DUF384, Domain of unknown function (DUF384).  
Length=55

 Score = 91.7 bits (229),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 30/47 (64%), Positives = 38/47 (81%), Gaps = 0/47 (0%)

Query  291  REGRDKMRAINVYPIIRECHLHVDDEGVREACDRLVQVLMRDEEGEG  337
            REGR+ +R+  VYPI+RE H   +DE VREAC+RLVQ+L+RDEE EG
Sbjct  9    REGREYLRSKGVYPILRELHKWEEDEKVREACERLVQLLIRDEEEEG  55



Lambda      K        H        a         alpha
   0.318    0.134    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00021407

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461153 pfam04063, DUF383, Domain of unknown function (DUF383)     274     5e-94
CDD:461154 pfam04064, DUF384, Domain of unknown function (DUF384)     93.7    4e-25


>CDD:461153 pfam04063, DUF383, Domain of unknown function (DUF383).  
Length=188

 Score = 274 bits (703),  Expect = 5e-94, Method: Composition-based stats.
 Identities = 91/161 (57%), Positives = 121/161 (75%), Gaps = 1/161 (1%)

Query  48   SRLITLKRRTA-ESVSTSTMAIDQLMDCFVKGAEGALNKKANFDYLSYLFADLSKSEIGR  106
              L+ LKR +  E +S+S +AIDQL+D FVKGA+G  NK AN+DYL+Y+FA+LS+   GR
Sbjct  28   KSLLELKRSSEPEDLSSSGLAIDQLVDLFVKGADGGYNKHANYDYLAYVFANLSQLPEGR  87

Query  107  AYFTTRQDYDGVVPVTKLTVFTEHESTVRRKGVASTIKNVAFDIPFHPTLLSADDANLLP  166
             YF T Q+YDGVVP++KL VFTEH+S +RR GVASTIKN  FD   H  LLS ++ ++LP
Sbjct  88   KYFLTPQEYDGVVPLSKLLVFTEHDSVIRRGGVASTIKNCCFDTEAHEWLLSEEEIDILP  147

Query  167  YVLLPITGPEEFSEEESMAMLPDLQLLPPDKRRDGDNSIIV  207
            Y+LLP+ GPEE+ EE+   + P+LQLLPPDK+R+ D  I +
Sbjct  148  YLLLPLAGPEEYDEEDMEKLPPELQLLPPDKKREPDPDIRL  188


>CDD:461154 pfam04064, DUF384, Domain of unknown function (DUF384).  
Length=55

 Score = 93.7 bits (234),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 30/47 (64%), Positives = 38/47 (81%), Gaps = 0/47 (0%)

Query  220  REGRDKMRAINVYPIIRECHLHVDDEGVREACDRLVQVLMRDEEGEG  266
            REGR+ +R+  VYPI+RE H   +DE VREAC+RLVQ+L+RDEE EG
Sbjct  9    REGREYLRSKGVYPILRELHKWEEDEKVREACERLVQLLIRDEEEEG  55



Lambda      K        H        a         alpha
   0.316    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00026532

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  65.2    1e-13


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 65.2 bits (160),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (93%), Gaps = 0/28 (0%)

Query  169  EQLSTEMVTLSAIPRSRWQTLLHLDLIR  196
            +QLS ++VTLS +PRSRWQTLLHLDLI+
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIK  28



Lambda      K        H        a         alpha
   0.322    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00026533

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  65.2    1e-13


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 65.2 bits (160),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (93%), Gaps = 0/28 (0%)

Query  169  EQLSTEMVTLSAIPRSRWQTLLHLDLIR  196
            +QLS ++VTLS +PRSRWQTLLHLDLI+
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIK  28



Lambda      K        H        a         alpha
   0.322    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00026534

Length=1036
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  315     1e-101


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 315 bits (810),  Expect = 1e-101, Method: Composition-based stats.
 Identities = 110/221 (50%), Positives = 144/221 (65%), Gaps = 12/221 (5%)

Query  813   EQLSTEMVTLSAIPRSRWQTLLHLDLIRERNKPKDPPKAPEKAPFFLPSVSEKSSIENSD  872
             +QLS ++VTLS +PRSRWQTLLHLDLI++RNKPK+ PK PEKAPFFLP++        S 
Sbjct  1     DQLSEDLVTLSLLPRSRWQTLLHLDLIKQRNKPKEAPKKPEKAPFFLPTLGGLVGDFASV  60

Query  873   RSTVLSVEHTLVERSRITRHQRSQTVDDSGSLFTVLLHSGRQSNDFAPFIDYLKSLSPAR  932
              +     E    ERSR+ +           S FT LL  G ++ D+ PF++YLKSLSP+ 
Sbjct  61    EAQEEEEEEEEEERSRLLKLGSLG----FESEFTKLLREGSETGDYTPFLEYLKSLSPSA  116

Query  933   TDLEIRSLDLRVQDGHSELSLFVIALTTRLRLRKDFELVNAWMAVFLKIHADIVRKCSES  992
              DLEIRSL+        EL  F+ ALT+RL+  +DFELV A+MAVFLK+H D++    E 
Sbjct  117   IDLEIRSLN--SGGPLEELVSFIRALTSRLKSNRDFELVQAYMAVFLKLHGDVIHSNEE-  173

Query  993   AANDHEELRKSLVQWSEEQQREAKRLADLVGYCRGVVGFIR  1033
                  EELR++L +W   Q+ E +RL +LVGYC GVVGF+R
Sbjct  174   -----EELREALEEWKSVQEEEWERLDELVGYCSGVVGFLR  209



Lambda      K        H        a         alpha
   0.319    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1330923440


Query= TCONS_00021418

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  65.2    1e-13


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 65.2 bits (160),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (93%), Gaps = 0/28 (0%)

Query  169  EQLSTEMVTLSAIPRSRWQTLLHLDLIR  196
            +QLS ++VTLS +PRSRWQTLLHLDLI+
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIK  28



Lambda      K        H        a         alpha
   0.322    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00021408

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  304     5e-104


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 304 bits (781),  Expect = 5e-104, Method: Composition-based stats.
 Identities = 110/221 (50%), Positives = 144/221 (65%), Gaps = 12/221 (5%)

Query  169  EQLSTEMVTLSAIPRSRWQTLLHLDLIRERNKPKDPPKAPEKAPFFLPSVSEKSSIENSD  228
            +QLS ++VTLS +PRSRWQTLLHLDLI++RNKPK+ PK PEKAPFFLP++        S 
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIKQRNKPKEAPKKPEKAPFFLPTLGGLVGDFASV  60

Query  229  RSTVLSVEHTLVERSRITRHQRSQTVDDSGSLFTVLLHSGRQSNDFAPFIDYLKSLSPAR  288
             +     E    ERSR+ +           S FT LL  G ++ D+ PF++YLKSLSP+ 
Sbjct  61   EAQEEEEEEEEEERSRLLKLGSLG----FESEFTKLLREGSETGDYTPFLEYLKSLSPSA  116

Query  289  TDLEIRSLDLRVQDGHSELSLFVIALTTRLRLRKDFELVNAWMAVFLKIHADIVRKCSES  348
             DLEIRSL+        EL  F+ ALT+RL+  +DFELV A+MAVFLK+H D++    E 
Sbjct  117  IDLEIRSLN--SGGPLEELVSFIRALTSRLKSNRDFELVQAYMAVFLKLHGDVIHSNEE-  173

Query  349  AANDHEELRKSLVQWSEEQQREAKRLADLVGYCRGVVGFIR  389
                 EELR++L +W   Q+ E +RL +LVGYC GVVGF+R
Sbjct  174  -----EELREALEEWKSVQEEEWERLDELVGYCSGVVGFLR  209



Lambda      K        H        a         alpha
   0.319    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00021409

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  65.6    4e-13


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 65.6 bits (161),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (93%), Gaps = 0/28 (0%)

Query  288  EQLSTEMVTLSAIPRSRWQTLLHLDLIR  315
            +QLS ++VTLS +PRSRWQTLLHLDLI+
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIK  28



Lambda      K        H        a         alpha
   0.321    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00021410

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  304     5e-104


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 304 bits (781),  Expect = 5e-104, Method: Composition-based stats.
 Identities = 110/221 (50%), Positives = 144/221 (65%), Gaps = 12/221 (5%)

Query  169  EQLSTEMVTLSAIPRSRWQTLLHLDLIRERNKPKDPPKAPEKAPFFLPSVSEKSSIENSD  228
            +QLS ++VTLS +PRSRWQTLLHLDLI++RNKPK+ PK PEKAPFFLP++        S 
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIKQRNKPKEAPKKPEKAPFFLPTLGGLVGDFASV  60

Query  229  RSTVLSVEHTLVERSRITRHQRSQTVDDSGSLFTVLLHSGRQSNDFAPFIDYLKSLSPAR  288
             +     E    ERSR+ +           S FT LL  G ++ D+ PF++YLKSLSP+ 
Sbjct  61   EAQEEEEEEEEEERSRLLKLGSLG----FESEFTKLLREGSETGDYTPFLEYLKSLSPSA  116

Query  289  TDLEIRSLDLRVQDGHSELSLFVIALTTRLRLRKDFELVNAWMAVFLKIHADIVRKCSES  348
             DLEIRSL+        EL  F+ ALT+RL+  +DFELV A+MAVFLK+H D++    E 
Sbjct  117  IDLEIRSLN--SGGPLEELVSFIRALTSRLKSNRDFELVQAYMAVFLKLHGDVIHSNEE-  173

Query  349  AANDHEELRKSLVQWSEEQQREAKRLADLVGYCRGVVGFIR  389
                 EELR++L +W   Q+ E +RL +LVGYC GVVGF+R
Sbjct  174  -----EELREALEEWKSVQEEEWERLDELVGYCSGVVGFLR  209



Lambda      K        H        a         alpha
   0.319    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00021412

Length=857
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  65.6    2e-12


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 65.6 bits (161),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (93%), Gaps = 0/28 (0%)

Query  813  EQLSTEMVTLSAIPRSRWQTLLHLDLIR  840
            +QLS ++VTLS +PRSRWQTLLHLDLI+
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIK  28



Lambda      K        H        a         alpha
   0.320    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1093861668


Query= TCONS_00026535

Length=857
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  65.6    2e-12


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 65.6 bits (161),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (93%), Gaps = 0/28 (0%)

Query  813  EQLSTEMVTLSAIPRSRWQTLLHLDLIR  840
            +QLS ++VTLS +PRSRWQTLLHLDLI+
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIK  28



Lambda      K        H        a         alpha
   0.320    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1093861668


Query= TCONS_00021411

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  65.6    4e-13


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 65.6 bits (161),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (93%), Gaps = 0/28 (0%)

Query  288  EQLSTEMVTLSAIPRSRWQTLLHLDLIR  315
            +QLS ++VTLS +PRSRWQTLLHLDLI+
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIK  28



Lambda      K        H        a         alpha
   0.321    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00021413

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  65.2    1e-13


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 65.2 bits (160),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (93%), Gaps = 0/28 (0%)

Query  169  EQLSTEMVTLSAIPRSRWQTLLHLDLIR  196
            +QLS ++VTLS +PRSRWQTLLHLDLI+
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIK  28



Lambda      K        H        a         alpha
   0.322    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00026537

Length=857
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  65.6    2e-12


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 65.6 bits (161),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 26/28 (93%), Gaps = 0/28 (0%)

Query  813  EQLSTEMVTLSAIPRSRWQTLLHLDLIR  840
            +QLS ++VTLS +PRSRWQTLLHLDLI+
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIK  28



Lambda      K        H        a         alpha
   0.320    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1093861668


Query= TCONS_00026536

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  307     1e-103


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 307 bits (788),  Expect = 1e-103, Method: Composition-based stats.
 Identities = 110/221 (50%), Positives = 144/221 (65%), Gaps = 12/221 (5%)

Query  288  EQLSTEMVTLSAIPRSRWQTLLHLDLIRERNKPKDPPKAPEKAPFFLPSVSEKSSIENSD  347
            +QLS ++VTLS +PRSRWQTLLHLDLI++RNKPK+ PK PEKAPFFLP++        S 
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIKQRNKPKEAPKKPEKAPFFLPTLGGLVGDFASV  60

Query  348  RSTVLSVEHTLVERSRITRHQRSQTVDDSGSLFTVLLHSGRQSNDFAPFIDYLKSLSPAR  407
             +     E    ERSR+ +           S FT LL  G ++ D+ PF++YLKSLSP+ 
Sbjct  61   EAQEEEEEEEEEERSRLLKLGSLG----FESEFTKLLREGSETGDYTPFLEYLKSLSPSA  116

Query  408  TDLEIRSLDLRVQDGHSELSLFVIALTTRLRLRKDFELVNAWMAVFLKIHADIVRKCSES  467
             DLEIRSL+        EL  F+ ALT+RL+  +DFELV A+MAVFLK+H D++    E 
Sbjct  117  IDLEIRSLN--SGGPLEELVSFIRALTSRLKSNRDFELVQAYMAVFLKLHGDVIHSNEE-  173

Query  468  AANDHEELRKSLVQWSEEQQREAKRLADLVGYCRGVVGFIR  508
                 EELR++L +W   Q+ E +RL +LVGYC GVVGF+R
Sbjct  174  -----EELREALEEWKSVQEEEWERLDELVGYCSGVVGFLR  209



Lambda      K        H        a         alpha
   0.319    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 635907720


Query= TCONS_00021417

Length=593
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  312     2e-104


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 312 bits (801),  Expect = 2e-104, Method: Composition-based stats.
 Identities = 110/221 (50%), Positives = 144/221 (65%), Gaps = 12/221 (5%)

Query  370  EQLSTEMVTLSAIPRSRWQTLLHLDLIRERNKPKDPPKAPEKAPFFLPSVSEKSSIENSD  429
            +QLS ++VTLS +PRSRWQTLLHLDLI++RNKPK+ PK PEKAPFFLP++        S 
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIKQRNKPKEAPKKPEKAPFFLPTLGGLVGDFASV  60

Query  430  RSTVLSVEHTLVERSRITRHQRSQTVDDSGSLFTVLLHSGRQSNDFAPFIDYLKSLSPAR  489
             +     E    ERSR+ +           S FT LL  G ++ D+ PF++YLKSLSP+ 
Sbjct  61   EAQEEEEEEEEEERSRLLKLGSLG----FESEFTKLLREGSETGDYTPFLEYLKSLSPSA  116

Query  490  TDLEIRSLDLRVQDGHSELSLFVIALTTRLRLRKDFELVNAWMAVFLKIHADIVRKCSES  549
             DLEIRSL+        EL  F+ ALT+RL+  +DFELV A+MAVFLK+H D++    E 
Sbjct  117  IDLEIRSLN--SGGPLEELVSFIRALTSRLKSNRDFELVQAYMAVFLKLHGDVIHSNEE-  173

Query  550  AANDHEELRKSLVQWSEEQQREAKRLADLVGYCRGVVGFIR  590
                 EELR++L +W   Q+ E +RL +LVGYC GVVGF+R
Sbjct  174  -----EELREALEEWKSVQEEEWERLDELVGYCSGVVGFLR  209



Lambda      K        H        a         alpha
   0.319    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 748708428


Query= TCONS_00021414

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  304     5e-104


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 304 bits (781),  Expect = 5e-104, Method: Composition-based stats.
 Identities = 110/221 (50%), Positives = 144/221 (65%), Gaps = 12/221 (5%)

Query  169  EQLSTEMVTLSAIPRSRWQTLLHLDLIRERNKPKDPPKAPEKAPFFLPSVSEKSSIENSD  228
            +QLS ++VTLS +PRSRWQTLLHLDLI++RNKPK+ PK PEKAPFFLP++        S 
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIKQRNKPKEAPKKPEKAPFFLPTLGGLVGDFASV  60

Query  229  RSTVLSVEHTLVERSRITRHQRSQTVDDSGSLFTVLLHSGRQSNDFAPFIDYLKSLSPAR  288
             +     E    ERSR+ +           S FT LL  G ++ D+ PF++YLKSLSP+ 
Sbjct  61   EAQEEEEEEEEEERSRLLKLGSLG----FESEFTKLLREGSETGDYTPFLEYLKSLSPSA  116

Query  289  TDLEIRSLDLRVQDGHSELSLFVIALTTRLRLRKDFELVNAWMAVFLKIHADIVRKCSES  348
             DLEIRSL+        EL  F+ ALT+RL+  +DFELV A+MAVFLK+H D++    E 
Sbjct  117  IDLEIRSLN--SGGPLEELVSFIRALTSRLKSNRDFELVQAYMAVFLKLHGDVIHSNEE-  173

Query  349  AANDHEELRKSLVQWSEEQQREAKRLADLVGYCRGVVGFIR  389
                 EELR++L +W   Q+ E +RL +LVGYC GVVGF+R
Sbjct  174  -----EELREALEEWKSVQEEEWERLDELVGYCSGVVGFLR  209



Lambda      K        H        a         alpha
   0.319    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00026538

Length=575
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  270     2e-88


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 270 bits (692),  Expect = 2e-88, Method: Composition-based stats.
 Identities = 100/216 (46%), Positives = 134/216 (62%), Gaps = 20/216 (9%)

Query  370  EQLSTEMVTLSAIPRSRWQTLLHLDLIRERNKPKDPPKAPEKAPFFLPSVSEKSSIENSD  429
            +QLS ++VTLS +PRSRWQTLLHLDLI++RNKPK+ PK PEKAPFFLP++        S 
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIKQRNKPKEAPKKPEKAPFFLPTLGGLVGDFASV  60

Query  430  RSTVLSVEHTLVERSRITRHQRSQTVDDSGSLFTVLLHSGRQSNDFAPFIDYLKSLSPAR  489
             +     E    ERSR+ +           S FT LL  G ++ D+ PF++YLKSLSP+ 
Sbjct  61   EAQEEEEEEEEEERSRLLKLGSLG----FESEFTKLLREGSETGDYTPFLEYLKSLSPSA  116

Query  490  TDLEIRSLDLRVQDGHSELSLFVIALTTRLRLRKDFELCSES-------------AANDH  536
             DLEIRSL+        EL  F+ ALT+RL+  +DFEL  ++              +N+ 
Sbjct  117  IDLEIRSLN--SGGPLEELVSFIRALTSRLKSNRDFELV-QAYMAVFLKLHGDVIHSNEE  173

Query  537  EELRKSLVQWSEEQQREAKRLADLVGYCRGVVGFIR  572
            EELR++L +W   Q+ E +RL +LVGYC GVVGF+R
Sbjct  174  EELREALEEWKSVQEEEWERLDELVGYCSGVVGFLR  209



Lambda      K        H        a         alpha
   0.318    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 721808724


Query= TCONS_00021416

Length=593
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  312     2e-104


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 312 bits (801),  Expect = 2e-104, Method: Composition-based stats.
 Identities = 110/221 (50%), Positives = 144/221 (65%), Gaps = 12/221 (5%)

Query  370  EQLSTEMVTLSAIPRSRWQTLLHLDLIRERNKPKDPPKAPEKAPFFLPSVSEKSSIENSD  429
            +QLS ++VTLS +PRSRWQTLLHLDLI++RNKPK+ PK PEKAPFFLP++        S 
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIKQRNKPKEAPKKPEKAPFFLPTLGGLVGDFASV  60

Query  430  RSTVLSVEHTLVERSRITRHQRSQTVDDSGSLFTVLLHSGRQSNDFAPFIDYLKSLSPAR  489
             +     E    ERSR+ +           S FT LL  G ++ D+ PF++YLKSLSP+ 
Sbjct  61   EAQEEEEEEEEEERSRLLKLGSLG----FESEFTKLLREGSETGDYTPFLEYLKSLSPSA  116

Query  490  TDLEIRSLDLRVQDGHSELSLFVIALTTRLRLRKDFELVNAWMAVFLKIHADIVRKCSES  549
             DLEIRSL+        EL  F+ ALT+RL+  +DFELV A+MAVFLK+H D++    E 
Sbjct  117  IDLEIRSLN--SGGPLEELVSFIRALTSRLKSNRDFELVQAYMAVFLKLHGDVIHSNEE-  173

Query  550  AANDHEELRKSLVQWSEEQQREAKRLADLVGYCRGVVGFIR  590
                 EELR++L +W   Q+ E +RL +LVGYC GVVGF+R
Sbjct  174  -----EELREALEEWKSVQEEEWERLDELVGYCSGVVGFLR  209



Lambda      K        H        a         alpha
   0.319    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 748708428


Query= TCONS_00021415

Length=593
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  312     2e-104


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 312 bits (801),  Expect = 2e-104, Method: Composition-based stats.
 Identities = 110/221 (50%), Positives = 144/221 (65%), Gaps = 12/221 (5%)

Query  370  EQLSTEMVTLSAIPRSRWQTLLHLDLIRERNKPKDPPKAPEKAPFFLPSVSEKSSIENSD  429
            +QLS ++VTLS +PRSRWQTLLHLDLI++RNKPK+ PK PEKAPFFLP++        S 
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIKQRNKPKEAPKKPEKAPFFLPTLGGLVGDFASV  60

Query  430  RSTVLSVEHTLVERSRITRHQRSQTVDDSGSLFTVLLHSGRQSNDFAPFIDYLKSLSPAR  489
             +     E    ERSR+ +           S FT LL  G ++ D+ PF++YLKSLSP+ 
Sbjct  61   EAQEEEEEEEEEERSRLLKLGSLG----FESEFTKLLREGSETGDYTPFLEYLKSLSPSA  116

Query  490  TDLEIRSLDLRVQDGHSELSLFVIALTTRLRLRKDFELVNAWMAVFLKIHADIVRKCSES  549
             DLEIRSL+        EL  F+ ALT+RL+  +DFELV A+MAVFLK+H D++    E 
Sbjct  117  IDLEIRSLN--SGGPLEELVSFIRALTSRLKSNRDFELVQAYMAVFLKLHGDVIHSNEE-  173

Query  550  AANDHEELRKSLVQWSEEQQREAKRLADLVGYCRGVVGFIR  590
                 EELR++L +W   Q+ E +RL +LVGYC GVVGF+R
Sbjct  174  -----EELREALEEWKSVQEEEWERLDELVGYCSGVVGFLR  209



Lambda      K        H        a         alpha
   0.319    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 748708428


Query= TCONS_00026539

Length=593
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  312     2e-104


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 312 bits (801),  Expect = 2e-104, Method: Composition-based stats.
 Identities = 110/221 (50%), Positives = 144/221 (65%), Gaps = 12/221 (5%)

Query  370  EQLSTEMVTLSAIPRSRWQTLLHLDLIRERNKPKDPPKAPEKAPFFLPSVSEKSSIENSD  429
            +QLS ++VTLS +PRSRWQTLLHLDLI++RNKPK+ PK PEKAPFFLP++        S 
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIKQRNKPKEAPKKPEKAPFFLPTLGGLVGDFASV  60

Query  430  RSTVLSVEHTLVERSRITRHQRSQTVDDSGSLFTVLLHSGRQSNDFAPFIDYLKSLSPAR  489
             +     E    ERSR+ +           S FT LL  G ++ D+ PF++YLKSLSP+ 
Sbjct  61   EAQEEEEEEEEEERSRLLKLGSLG----FESEFTKLLREGSETGDYTPFLEYLKSLSPSA  116

Query  490  TDLEIRSLDLRVQDGHSELSLFVIALTTRLRLRKDFELVNAWMAVFLKIHADIVRKCSES  549
             DLEIRSL+        EL  F+ ALT+RL+  +DFELV A+MAVFLK+H D++    E 
Sbjct  117  IDLEIRSLN--SGGPLEELVSFIRALTSRLKSNRDFELVQAYMAVFLKLHGDVIHSNEE-  173

Query  550  AANDHEELRKSLVQWSEEQQREAKRLADLVGYCRGVVGFIR  590
                 EELR++L +W   Q+ E +RL +LVGYC GVVGF+R
Sbjct  174  -----EELREALEEWKSVQEEEWERLDELVGYCSGVVGFLR  209



Lambda      K        H        a         alpha
   0.319    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 748708428


Query= TCONS_00026540

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  307     1e-103


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 307 bits (788),  Expect = 1e-103, Method: Composition-based stats.
 Identities = 110/221 (50%), Positives = 144/221 (65%), Gaps = 12/221 (5%)

Query  288  EQLSTEMVTLSAIPRSRWQTLLHLDLIRERNKPKDPPKAPEKAPFFLPSVSEKSSIENSD  347
            +QLS ++VTLS +PRSRWQTLLHLDLI++RNKPK+ PK PEKAPFFLP++        S 
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIKQRNKPKEAPKKPEKAPFFLPTLGGLVGDFASV  60

Query  348  RSTVLSVEHTLVERSRITRHQRSQTVDDSGSLFTVLLHSGRQSNDFAPFIDYLKSLSPAR  407
             +     E    ERSR+ +           S FT LL  G ++ D+ PF++YLKSLSP+ 
Sbjct  61   EAQEEEEEEEEEERSRLLKLGSLG----FESEFTKLLREGSETGDYTPFLEYLKSLSPSA  116

Query  408  TDLEIRSLDLRVQDGHSELSLFVIALTTRLRLRKDFELVNAWMAVFLKIHADIVRKCSES  467
             DLEIRSL+        EL  F+ ALT+RL+  +DFELV A+MAVFLK+H D++    E 
Sbjct  117  IDLEIRSLN--SGGPLEELVSFIRALTSRLKSNRDFELVQAYMAVFLKLHGDVIHSNEE-  173

Query  468  AANDHEELRKSLVQWSEEQQREAKRLADLVGYCRGVVGFIR  508
                 EELR++L +W   Q+ E +RL +LVGYC GVVGF+R
Sbjct  174  -----EELREALEEWKSVQEEEWERLDELVGYCSGVVGFLR  209



Lambda      K        H        a         alpha
   0.319    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 635907720


Query= TCONS_00021420

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  299     2e-103


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 299 bits (767),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 110/221 (50%), Positives = 144/221 (65%), Gaps = 12/221 (5%)

Query  78   EQLSTEMVTLSAIPRSRWQTLLHLDLIRERNKPKDPPKAPEKAPFFLPSVSEKSSIENSD  137
            +QLS ++VTLS +PRSRWQTLLHLDLI++RNKPK+ PK PEKAPFFLP++        S 
Sbjct  1    DQLSEDLVTLSLLPRSRWQTLLHLDLIKQRNKPKEAPKKPEKAPFFLPTLGGLVGDFASV  60

Query  138  RSTVLSVEHTLVERSRITRHQRSQTVDDSGSLFTVLLHSGRQSNDFAPFIDYLKSLSPAR  197
             +     E    ERSR+ +           S FT LL  G ++ D+ PF++YLKSLSP+ 
Sbjct  61   EAQEEEEEEEEEERSRLLKLGSLG----FESEFTKLLREGSETGDYTPFLEYLKSLSPSA  116

Query  198  TDLEIRSLDLRVQDGHSELSLFVIALTTRLRLRKDFELVNAWMAVFLKIHADIVRKCSES  257
             DLEIRSL+        EL  F+ ALT+RL+  +DFELV A+MAVFLK+H D++    E 
Sbjct  117  IDLEIRSLN--SGGPLEELVSFIRALTSRLKSNRDFELVQAYMAVFLKLHGDVIHSNEE-  173

Query  258  AANDHEELRKSLVQWSEEQQREAKRLADLVGYCRGVVGFIR  298
                 EELR++L +W   Q+ E +RL +LVGYC GVVGF+R
Sbjct  174  -----EELREALEEWKSVQEEEWERLDELVGYCSGVVGFLR  209



Lambda      K        H        a         alpha
   0.317    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00026541

Length=62
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  84.5    4e-23


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 84.5 bits (210),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 30/59 (51%), Positives = 40/59 (68%), Gaps = 6/59 (10%)

Query  1    MAVFLKIHADIVRKCSESAANDHEELRKSLVQWSEEQQREAKRLADLVGYCRGVVGFIR  59
            MAVFLK+H D++    E      EELR++L +W   Q+ E +RL +LVGYC GVVGF+R
Sbjct  157  MAVFLKLHGDVIHSNEE------EELREALEEWKSVQEEEWERLDELVGYCSGVVGFLR  209



Lambda      K        H        a         alpha
   0.322    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00026542

Length=62
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putat...  84.5    4e-23


>CDD:461219 pfam04192, Utp21, Utp21 specific WD40 associated putative domain. 
 Utp21 is a subunit of U3 snoRNP, which is essential for 
synthesis of 18S rRNA.
Length=209

 Score = 84.5 bits (210),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 30/59 (51%), Positives = 40/59 (68%), Gaps = 6/59 (10%)

Query  1    MAVFLKIHADIVRKCSESAANDHEELRKSLVQWSEEQQREAKRLADLVGYCRGVVGFIR  59
            MAVFLK+H D++    E      EELR++L +W   Q+ E +RL +LVGYC GVVGF+R
Sbjct  157  MAVFLKLHGDVIHSNEE------EELREALEEWKSVQEEEWERLDELVGYCSGVVGFLR  209



Lambda      K        H        a         alpha
   0.322    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00021421

Length=366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430193 pfam08755, YccV-like, Hemimethylated DNA-binding prote...  100     8e-27


>CDD:430193 pfam08755, YccV-like, Hemimethylated DNA-binding protein YccV 
like.  YccV is a hemimethylated DNA binding protein which has 
been shown to regulate dnaA gene expression. The structure 
of one of the hypothetical proteins in this family has been 
solved and it forms a beta sheet structure with a terminating 
alpha helix.
Length=96

 Score = 100 bits (251),  Expect = 8e-27, Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 41/58 (71%), Gaps = 2/58 (3%)

Query  302  VRYRIGQVFRHRRYSYLAVITGWDTECDASEQWMRRMGIDRLEAGRHQSFYHALYGNC  359
            V++RIGQV RHRRY Y  VI GWD EC ASE+W+ +MG+D L  GR Q FYH L  N 
Sbjct  1    VKFRIGQVVRHRRYGYRGVIVGWDPECAASEEWIEQMGVDSL--GRDQPFYHVLVDNE  56



Lambda      K        H        a         alpha
   0.325    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00026543

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430193 pfam08755, YccV-like, Hemimethylated DNA-binding prote...   99     6e-27


>CDD:430193 pfam08755, YccV-like, Hemimethylated DNA-binding protein YccV 
like.  YccV is a hemimethylated DNA binding protein which has 
been shown to regulate dnaA gene expression. The structure 
of one of the hypothetical proteins in this family has been 
solved and it forms a beta sheet structure with a terminating 
alpha helix.
Length=96

 Score =  99 bits (250),  Expect = 6e-27, Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 41/58 (71%), Gaps = 2/58 (3%)

Query  262  VRYRIGQVFRHRRYSYLAVITGWDTECDASEQWMRRMGIDRLEAGRHQSFYHALYGNC  319
            V++RIGQV RHRRY Y  VI GWD EC ASE+W+ +MG+D L  GR Q FYH L  N 
Sbjct  1    VKFRIGQVVRHRRYGYRGVIVGWDPECAASEEWIEQMGVDSL--GRDQPFYHVLVDNE  56



Lambda      K        H        a         alpha
   0.325    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00021422

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460915 pfam03416, Peptidase_C54, Peptidase family C54             441     7e-157


>CDD:460915 pfam03416, Peptidase_C54, Peptidase family C54.  
Length=269

 Score = 441 bits (1137),  Expect = 7e-157, Method: Composition-based stats.
 Identities = 144/297 (48%), Positives = 175/297 (59%), Gaps = 34/297 (11%)

Query  82   PESFLDDFESRIWITYRSNFPPIPKPIDQDAFSTMTLSVRLRSQLVDQHGFTSDTGWGCM  141
            PE FLDDFESRIW TYR  FPPI                          GFTSDTGWGCM
Sbjct  1    PEEFLDDFESRIWFTYRKGFPPIGG-----------------------SGFTSDTGWGCM  37

Query  142  IRSGQSLLANAMSILLFGRGWRRGIDNDREA---QLLSQFADHPDAPFSIHRFVQHGAEF  198
            +RSGQ LLA A+     GR WR G  ++ E    ++LS FAD P APFSIH+ VQ G E 
Sbjct  38   LRSGQMLLAQALLRHHLGRDWRWGDPDEEEETYRKILSWFADDPSAPFSIHQIVQMGKES  97

Query  199  CNKHPGEWFGPSATARCIQALVSQHGNLNLGVYMTDDTADVYEDKFLDAA--NDGRGSFR  256
              K PGEWFGPS  A+ ++ LV+      L VY+  D   VY+D        N      +
Sbjct  98   SGKKPGEWFGPSTVAQILKKLVNADPWSGLAVYVASDG-TVYKDDVRKLCAPNSASSGEK  156

Query  257  PTLILIGTRLGIDRITPVYWDAVKTTLQLPQSVGIAGGRPSASHYFVGVQGSHLFYLDPH  316
            P LIL+  RLG+D+I PVY  A+K  L LPQSVGI GGRPS+S YFVG QG  L YLDPH
Sbjct  157  PLLILVPLRLGLDKINPVYIPALKALLSLPQSVGIIGGRPSSSLYFVGFQGDKLIYLDPH  216

Query  317  QTRPALPQRNIDDPYTDEEIETYHTRRLRRIHIRDMDPSMLIGFIIKDREDWAHWKS  373
             T+PA     +D  YTD ++E+YH +R R++ I  MDPSM +GF  +D ED+  + S
Sbjct  217  TTQPA-----VDVSYTDFDLESYHCKRPRKMPISKMDPSMALGFYCRDEEDFEDFCS  268



Lambda      K        H        a         alpha
   0.320    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00026546

Length=464


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0823    0.140     1.90     42.6     43.6 

Effective search space used: 573605296


Query= TCONS_00021423

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460915 pfam03416, Peptidase_C54, Peptidase family C54             441     7e-157


>CDD:460915 pfam03416, Peptidase_C54, Peptidase family C54.  
Length=269

 Score = 441 bits (1137),  Expect = 7e-157, Method: Composition-based stats.
 Identities = 144/297 (48%), Positives = 175/297 (59%), Gaps = 34/297 (11%)

Query  82   PESFLDDFESRIWITYRSNFPPIPKPIDQDAFSTMTLSVRLRSQLVDQHGFTSDTGWGCM  141
            PE FLDDFESRIW TYR  FPPI                          GFTSDTGWGCM
Sbjct  1    PEEFLDDFESRIWFTYRKGFPPIGG-----------------------SGFTSDTGWGCM  37

Query  142  IRSGQSLLANAMSILLFGRGWRRGIDNDREA---QLLSQFADHPDAPFSIHRFVQHGAEF  198
            +RSGQ LLA A+     GR WR G  ++ E    ++LS FAD P APFSIH+ VQ G E 
Sbjct  38   LRSGQMLLAQALLRHHLGRDWRWGDPDEEEETYRKILSWFADDPSAPFSIHQIVQMGKES  97

Query  199  CNKHPGEWFGPSATARCIQALVSQHGNLNLGVYMTDDTADVYEDKFLDAA--NDGRGSFR  256
              K PGEWFGPS  A+ ++ LV+      L VY+  D   VY+D        N      +
Sbjct  98   SGKKPGEWFGPSTVAQILKKLVNADPWSGLAVYVASDG-TVYKDDVRKLCAPNSASSGEK  156

Query  257  PTLILIGTRLGIDRITPVYWDAVKTTLQLPQSVGIAGGRPSASHYFVGVQGSHLFYLDPH  316
            P LIL+  RLG+D+I PVY  A+K  L LPQSVGI GGRPS+S YFVG QG  L YLDPH
Sbjct  157  PLLILVPLRLGLDKINPVYIPALKALLSLPQSVGIIGGRPSSSLYFVGFQGDKLIYLDPH  216

Query  317  QTRPALPQRNIDDPYTDEEIETYHTRRLRRIHIRDMDPSMLIGFIIKDREDWAHWKS  373
             T+PA     +D  YTD ++E+YH +R R++ I  MDPSM +GF  +D ED+  + S
Sbjct  217  TTQPA-----VDVSYTDFDLESYHCKRPRKMPISKMDPSMALGFYCRDEEDFEDFCS  268



Lambda      K        H        a         alpha
   0.320    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00021424

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460915 pfam03416, Peptidase_C54, Peptidase family C54             440     3e-157


>CDD:460915 pfam03416, Peptidase_C54, Peptidase family C54.  
Length=269

 Score = 440 bits (1133),  Expect = 3e-157, Method: Composition-based stats.
 Identities = 146/297 (49%), Positives = 177/297 (60%), Gaps = 34/297 (11%)

Query  28   PESFLDDFESRIWITYRSNFPPIPKPIDQDAFSTMTLSVRLRSQLVDQHGFTSDTGWGCM  87
            PE FLDDFESRIW TYR  FPPI                          GFTSDTGWGCM
Sbjct  1    PEEFLDDFESRIWFTYRKGFPPIGG-----------------------SGFTSDTGWGCM  37

Query  88   IRSGQSLLANAMSILLFGRGWRRGIDNDREA---QLLSQFADHPDAPFSIHRFVQHGAEF  144
            +RSGQ LLA A+     GR WR G  ++ E    ++LS FAD P APFSIH+ VQ G E 
Sbjct  38   LRSGQMLLAQALLRHHLGRDWRWGDPDEEEETYRKILSWFADDPSAPFSIHQIVQMGKES  97

Query  145  CNKHPGEWFGPSATARCIQALVSQHGNLNLGVYMTDDTADVYEDKF--LDAANDGRGSFR  202
              K PGEWFGPS  A+ ++ LV+      L VY+  D   VY+D    L A N      +
Sbjct  98   SGKKPGEWFGPSTVAQILKKLVNADPWSGLAVYVASDG-TVYKDDVRKLCAPNSASSGEK  156

Query  203  PTLILIGTRLGIDRITPVYWDAVKTTLQLPQSVGIAGGRPSASHYFVGVQGSHLFYLDPH  262
            P LIL+  RLG+D+I PVY  A+K  L LPQSVGI GGRPS+S YFVG QG  L YLDPH
Sbjct  157  PLLILVPLRLGLDKINPVYIPALKALLSLPQSVGIIGGRPSSSLYFVGFQGDKLIYLDPH  216

Query  263  QTRPALPQRNIDDPYTDEEIETYHTRRLRRIHIRDMDPSMLIGFIIKDREDWAHWKS  319
             T+PA     +D  YTD ++E+YH +R R++ I  MDPSM +GF  +D ED+  + S
Sbjct  217  TTQPA-----VDVSYTDFDLESYHCKRPRKMPISKMDPSMALGFYCRDEEDFEDFCS  268



Lambda      K        H        a         alpha
   0.320    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00021425

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460915 pfam03416, Peptidase_C54, Peptidase family C54             441     2e-156


>CDD:460915 pfam03416, Peptidase_C54, Peptidase family C54.  
Length=269

 Score = 441 bits (1136),  Expect = 2e-156, Method: Composition-based stats.
 Identities = 144/297 (48%), Positives = 175/297 (59%), Gaps = 34/297 (11%)

Query  82   PESFLDDFESRIWITYRSNFPPIPKPIDQDAFSTMTLSVRLRSQLVDQHGFTSDTGWGCM  141
            PE FLDDFESRIW TYR  FPPI                          GFTSDTGWGCM
Sbjct  1    PEEFLDDFESRIWFTYRKGFPPIGG-----------------------SGFTSDTGWGCM  37

Query  142  IRSGQSLLANAMSILLFGRGWRRGIDNDREA---QLLSQFADHPDAPFSIHRFVQHGAEF  198
            +RSGQ LLA A+     GR WR G  ++ E    ++LS FAD P APFSIH+ VQ G E 
Sbjct  38   LRSGQMLLAQALLRHHLGRDWRWGDPDEEEETYRKILSWFADDPSAPFSIHQIVQMGKES  97

Query  199  CNKHPGEWFGPSATARCIQALVSQHGNLNLGVYMTDDTADVYEDKFLDAA--NDGRGSFR  256
              K PGEWFGPS  A+ ++ LV+      L VY+  D   VY+D        N      +
Sbjct  98   SGKKPGEWFGPSTVAQILKKLVNADPWSGLAVYVASDG-TVYKDDVRKLCAPNSASSGEK  156

Query  257  PTLILIGTRLGIDRITPVYWDAVKTTLQLPQSVGIAGGRPSASHYFVGVQGSHLFYLDPH  316
            P LIL+  RLG+D+I PVY  A+K  L LPQSVGI GGRPS+S YFVG QG  L YLDPH
Sbjct  157  PLLILVPLRLGLDKINPVYIPALKALLSLPQSVGIIGGRPSSSLYFVGFQGDKLIYLDPH  216

Query  317  QTRPALPQRNIDDPYTDEEIETYHTRRLRRIHIRDMDPSMLIGFIIKDREDWAHWKS  373
             T+PA     +D  YTD ++E+YH +R R++ I  MDPSM +GF  +D ED+  + S
Sbjct  217  TTQPA-----VDVSYTDFDLESYHCKRPRKMPISKMDPSMALGFYCRDEEDFEDFCS  268



Lambda      K        H        a         alpha
   0.320    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00026548

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460915 pfam03416, Peptidase_C54, Peptidase family C54             224     2e-74


>CDD:460915 pfam03416, Peptidase_C54, Peptidase family C54.  
Length=269

 Score = 224 bits (574),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 70/138 (51%), Positives = 89/138 (64%), Gaps = 7/138 (5%)

Query  7    DVYEDKF--LDAANDGRGSFRPTLILIGTRLGIDRITPVYWDAVKTTLQLPQSVGIAGGR  64
             VY+D    L A N      +P LIL+  RLG+D+I PVY  A+K  L LPQSVGI GGR
Sbjct  136  TVYKDDVRKLCAPNSASSGEKPLLILVPLRLGLDKINPVYIPALKALLSLPQSVGIIGGR  195

Query  65   PSASHYFVGVQGSHLFYLDPHQTRPALPQRNIDDPYTDEEIETYHTRRLRRIHIRDMDPS  124
            PS+S YFVG QG  L YLDPH T+PA     +D  YTD ++E+YH +R R++ I  MDPS
Sbjct  196  PSSSLYFVGFQGDKLIYLDPHTTQPA-----VDVSYTDFDLESYHCKRPRKMPISKMDPS  250

Query  125  MLIGFIIKDREDWAHWKS  142
            M +GF  +D ED+  + S
Sbjct  251  MALGFYCRDEEDFEDFCS  268



Lambda      K        H        a         alpha
   0.319    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00021427

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425518 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyl...  290     2e-97
CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. Thi...  71.5    2e-16


>CDD:425518 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase 
(catalytic domain).  These proteins contain one to three 
copies of a lipoyl binding domain followed by the catalytic 
domain.
Length=212

 Score = 290 bits (744),  Expect = 2e-97, Method: Composition-based stats.
 Identities = 96/215 (45%), Positives = 141/215 (66%), Gaps = 3/215 (1%)

Query  245  LKQSQNTAASLTTFNEVDMSSLMEFRKLYKDDVLKKTGVKLGFMSAFSRACVLAMKDVPA  304
            + +S+ T    T  +EVD++ L+  R+  K+D       KL F+    +A  LA+K  P 
Sbjct  1    MTESKQTIPHFTLTDEVDVTELLALREELKED-AADEETKLTFLPFLVKAVALALKKFPE  59

Query  305  VNASIEGPNGGDTIVYRDYVDISVAVATEKGLVTPVVRNAETMDLVGIEKAIADLGKKAR  364
            +NAS +G  G   IVY+ YV+I +AVAT +GL+ PV+RNA+   ++ I K I DL ++AR
Sbjct  60   LNASWDGEEG--EIVYKKYVNIGIAVATPRGLIVPVIRNADRKSILEIAKEIKDLAERAR  117

Query  365  DNKLTIEDMAGGTFTISNGGVFGSLMGTPIINLPQTAVLGLHAIKDRPTVVNGKVEIRPM  424
            + KL  ED+ GGTFTISN G+FG    TPIIN PQ A+LG+  I+ RP VV+G++ +R +
Sbjct  118  EGKLKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGRIRKRPVVVDGEIVVRKV  177

Query  425  MYLALTYDHRLLDGREAVTFLVKVKEYIEDPRRML  459
            M L+L++DHR++DG EA  FL  +KE +E+P  +L
Sbjct  178  MPLSLSFDHRVIDGAEAARFLNTLKELLENPELLL  212


>CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme.  This family 
covers two Prosite entries, the conserved lysine residue 
binds biotin in one group and lipoic acid in the other. Note 
that the HMM does not currently recognize the Glycine cleavage 
system H proteins.
Length=73

 Score = 71.5 bits (176),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 28/72 (39%), Positives = 46/72 (64%), Gaps = 1/72 (1%)

Query  81   VKVPQMAESITEGTLKQFSKQVGDYVERDEEIATIETDKIDVSVNAPESGTIKELLVNEE  140
            +K P + ES+ EG ++    +VGD V+  + +A +E  K+++ + AP +G +KE+LV E 
Sbjct  3    IKSPMIGESVREGVVEWL-VKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPEG  61

Query  141  DTVTVGQDLVKL  152
            DTV VG  L K+
Sbjct  62   DTVEVGDPLAKI  73



Lambda      K        H        a         alpha
   0.315    0.133    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 569004184


Query= TCONS_00021428

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459682 pfam00125, Histone, Core histone H2A/H2B/H3/H4             72.5    1e-16
CDD:465070 pfam16211, Histone_H2A_C, C-terminus of histone H2A        61.8    9e-14


>CDD:459682 pfam00125, Histone, Core histone H2A/H2B/H3/H4.  
Length=126

 Score = 72.5 bits (178),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 32/75 (43%), Gaps = 1/75 (1%)

Query  17   QSRSSKAGLAFPVGRVHRLLRKGNYA-QRVGAGAPVYLAAVLEYLAAEILELAGNAARDN  75
            QS +       P  RV R + +      R+ A A V L   +E    E+ E A   A   
Sbjct  50   QSSTDLLIYKLPFARVVREVVQSTKTDLRISADAVVALQEAVEDFLVELFEEANLLAIHA  109

Query  76   KKTRIIPRHLQLAIR  90
            K+  + P+ +QLA R
Sbjct  110  KRVTLTPKDIQLARR  124


>CDD:465070 pfam16211, Histone_H2A_C, C-terminus of histone H2A.  
Length=35

 Score = 61.8 bits (151),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 20/24 (83%), Positives = 21/24 (88%), Gaps = 0/24 (0%)

Query  93   EELNKLLGHVTIAQGGVLPNIHQS  116
            EELNKLL  VTIAQGGVLPNIH+ 
Sbjct  1    EELNKLLRGVTIAQGGVLPNIHKV  24



Lambda      K        H        a         alpha
   0.325    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00021429

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425518 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyl...  290     2e-97
CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. Thi...  71.5    2e-16


>CDD:425518 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase 
(catalytic domain).  These proteins contain one to three 
copies of a lipoyl binding domain followed by the catalytic 
domain.
Length=212

 Score = 290 bits (744),  Expect = 2e-97, Method: Composition-based stats.
 Identities = 96/215 (45%), Positives = 141/215 (66%), Gaps = 3/215 (1%)

Query  245  LKQSQNTAASLTTFNEVDMSSLMEFRKLYKDDVLKKTGVKLGFMSAFSRACVLAMKDVPA  304
            + +S+ T    T  +EVD++ L+  R+  K+D       KL F+    +A  LA+K  P 
Sbjct  1    MTESKQTIPHFTLTDEVDVTELLALREELKED-AADEETKLTFLPFLVKAVALALKKFPE  59

Query  305  VNASIEGPNGGDTIVYRDYVDISVAVATEKGLVTPVVRNAETMDLVGIEKAIADLGKKAR  364
            +NAS +G  G   IVY+ YV+I +AVAT +GL+ PV+RNA+   ++ I K I DL ++AR
Sbjct  60   LNASWDGEEG--EIVYKKYVNIGIAVATPRGLIVPVIRNADRKSILEIAKEIKDLAERAR  117

Query  365  DNKLTIEDMAGGTFTISNGGVFGSLMGTPIINLPQTAVLGLHAIKDRPTVVNGKVEIRPM  424
            + KL  ED+ GGTFTISN G+FG    TPIIN PQ A+LG+  I+ RP VV+G++ +R +
Sbjct  118  EGKLKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGRIRKRPVVVDGEIVVRKV  177

Query  425  MYLALTYDHRLLDGREAVTFLVKVKEYIEDPRRML  459
            M L+L++DHR++DG EA  FL  +KE +E+P  +L
Sbjct  178  MPLSLSFDHRVIDGAEAARFLNTLKELLENPELLL  212


>CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme.  This family 
covers two Prosite entries, the conserved lysine residue 
binds biotin in one group and lipoic acid in the other. Note 
that the HMM does not currently recognize the Glycine cleavage 
system H proteins.
Length=73

 Score = 71.5 bits (176),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 28/72 (39%), Positives = 46/72 (64%), Gaps = 1/72 (1%)

Query  81   VKVPQMAESITEGTLKQFSKQVGDYVERDEEIATIETDKIDVSVNAPESGTIKELLVNEE  140
            +K P + ES+ EG ++    +VGD V+  + +A +E  K+++ + AP +G +KE+LV E 
Sbjct  3    IKSPMIGESVREGVVEWL-VKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPEG  61

Query  141  DTVTVGQDLVKL  152
            DTV VG  L K+
Sbjct  62   DTVEVGDPLAKI  73



Lambda      K        H        a         alpha
   0.315    0.133    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 569004184


Query= TCONS_00026549

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425518 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyl...  270     7e-90
CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. Thi...  71.9    2e-16


>CDD:425518 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase 
(catalytic domain).  These proteins contain one to three 
copies of a lipoyl binding domain followed by the catalytic 
domain.
Length=212

 Score = 270 bits (692),  Expect = 7e-90, Method: Composition-based stats.
 Identities = 91/201 (45%), Positives = 132/201 (66%), Gaps = 3/201 (1%)

Query  245  LKQSQNTAASLTTFNEVDMSSLMEFRKLYKDDVLKKTGVKLGFMSAFSRACVLAMKDVPA  304
            + +S+ T    T  +EVD++ L+  R+  K+D       KL F+    +A  LA+K  P 
Sbjct  1    MTESKQTIPHFTLTDEVDVTELLALREELKED-AADEETKLTFLPFLVKAVALALKKFPE  59

Query  305  VNASIEGPNGGDTIVYRDYVDISVAVATEKGLVTPVVRNAETMDLVGIEKAIADLGKKAR  364
            +NAS +G  G   IVY+ YV+I +AVAT +GL+ PV+RNA+   ++ I K I DL ++AR
Sbjct  60   LNASWDGEEG--EIVYKKYVNIGIAVATPRGLIVPVIRNADRKSILEIAKEIKDLAERAR  117

Query  365  DNKLTIEDMAGGTFTISNGGVFGSLMGTPIINLPQTAVLGLHAIKDRPTVVNGKVEIRPM  424
            + KL  ED+ GGTFTISN G+FG    TPIIN PQ A+LG+  I+ RP VV+G++ +R +
Sbjct  118  EGKLKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGRIRKRPVVVDGEIVVRKV  177

Query  425  MYLALTYDHRLLDGREAVTFL  445
            M L+L++DHR++DG EA  FL
Sbjct  178  MPLSLSFDHRVIDGAEAARFL  198


>CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme.  This family 
covers two Prosite entries, the conserved lysine residue 
binds biotin in one group and lipoic acid in the other. Note 
that the HMM does not currently recognize the Glycine cleavage 
system H proteins.
Length=73

 Score = 71.9 bits (177),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 28/72 (39%), Positives = 46/72 (64%), Gaps = 1/72 (1%)

Query  81   VKVPQMAESITEGTLKQFSKQVGDYVERDEEIATIETDKIDVSVNAPESGTIKELLVNEE  140
            +K P + ES+ EG ++    +VGD V+  + +A +E  K+++ + AP +G +KE+LV E 
Sbjct  3    IKSPMIGESVREGVVEWL-VKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPEG  61

Query  141  DTVTVGQDLVKL  152
            DTV VG  L K+
Sbjct  62   DTVEVGDPLAKI  73



Lambda      K        H        a         alpha
   0.314    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00021430

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425518 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyl...  288     5e-97
CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. Thi...  68.8    2e-15


>CDD:425518 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase 
(catalytic domain).  These proteins contain one to three 
copies of a lipoyl binding domain followed by the catalytic 
domain.
Length=212

 Score = 288 bits (739),  Expect = 5e-97, Method: Composition-based stats.
 Identities = 96/215 (45%), Positives = 141/215 (66%), Gaps = 3/215 (1%)

Query  229  LKQSQNTAASLTTFNEVDMSSLMEFRKLYKDDVLKKTGVKLGFMSAFSRACVLAMKDVPA  288
            + +S+ T    T  +EVD++ L+  R+  K+D       KL F+    +A  LA+K  P 
Sbjct  1    MTESKQTIPHFTLTDEVDVTELLALREELKED-AADEETKLTFLPFLVKAVALALKKFPE  59

Query  289  VNASIEGPNGGDTIVYRDYVDISVAVATEKGLVTPVVRNAETMDLVGIEKAIADLGKKAR  348
            +NAS +G  G   IVY+ YV+I +AVAT +GL+ PV+RNA+   ++ I K I DL ++AR
Sbjct  60   LNASWDGEEG--EIVYKKYVNIGIAVATPRGLIVPVIRNADRKSILEIAKEIKDLAERAR  117

Query  349  DNKLTIEDMAGGTFTISNGGVFGSLMGTPIINLPQTAVLGLHAIKDRPTVVNGKVEIRPM  408
            + KL  ED+ GGTFTISN G+FG    TPIIN PQ A+LG+  I+ RP VV+G++ +R +
Sbjct  118  EGKLKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGRIRKRPVVVDGEIVVRKV  177

Query  409  MYLALTYDHRLLDGREAVTFLVKVKEYIEDPRRML  443
            M L+L++DHR++DG EA  FL  +KE +E+P  +L
Sbjct  178  MPLSLSFDHRVIDGAEAARFLNTLKELLENPELLL  212


>CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme.  This family 
covers two Prosite entries, the conserved lysine residue 
binds biotin in one group and lipoic acid in the other. Note 
that the HMM does not currently recognize the Glycine cleavage 
system H proteins.
Length=73

 Score = 68.8 bits (169),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 28/72 (39%), Positives = 46/72 (64%), Gaps = 1/72 (1%)

Query  65   VKVPQMAESITEGTLKQFSKQVGDYVERDEEIATIETDKIDVSVNAPESGTIKELLVNEE  124
            +K P + ES+ EG ++    +VGD V+  + +A +E  K+++ + AP +G +KE+LV E 
Sbjct  3    IKSPMIGESVREGVVEWL-VKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPEG  61

Query  125  DTVTVGQDLVKL  136
            DTV VG  L K+
Sbjct  62   DTVEVGDPLAKI  73



Lambda      K        H        a         alpha
   0.313    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00021431

Length=421


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00021432

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.117    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00021434

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432810 pfam12824, MRP-L20, Mitochondrial ribosomal protein su...  239     4e-82


>CDD:432810 pfam12824, MRP-L20, Mitochondrial ribosomal protein subunit L20. 
 This family is the essential mitochondrial ribosomal protein 
subunit L20 of fungi.
Length=161

 Score = 239 bits (611),  Expect = 4e-82, Method: Composition-based stats.
 Identities = 93/170 (55%), Positives = 111/170 (65%), Gaps = 12/170 (7%)

Query  31   RNQSSYRRTKQRLRVKPDASFGFSSDQTQDHIIFNPPSSAPSVFH-TPTKFLPPDDARRT  89
            R QSSY RT+ RL +KP  SFG          I NPPSSAPSV H TPTKFLP +D RR 
Sbjct  1    RPQSSYNRTRSRLNLKPGPSFGL---------IHNPPSSAPSVSHNTPTKFLPKNDPRRE  51

Query  90   LRTDVSMKSDQNPENLPPVFNSPTE--KKYHLTPSDIEEIRKLRLSDPMTWSRWKLAKRF  147
            L      +      +LPP+     E  KKYHLTP DIEEIR+LR  DP  W+R KLAK+F
Sbjct  52   LLAAKQSRDSPILSDLPPILKYKAEKEKKYHLTPEDIEEIRRLRAEDPEKWTRKKLAKKF  111

Query  148  DCSPMFIGMVCEASPQKKEIQRQVLEAVQSRWGLKRRMAREDRQLRKESW  197
             CSP+F+ MV EA  +KK+  +  LEA++SRWG KRR+AREDR+ RKE W
Sbjct  112  GCSPLFVSMVTEAPKEKKKEMKAELEAIKSRWGPKRRIAREDRKKRKELW  161



Lambda      K        H        a         alpha
   0.319    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00026550

Length=106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432810 pfam12824, MRP-L20, Mitochondrial ribosomal protein su...  159     2e-52


>CDD:432810 pfam12824, MRP-L20, Mitochondrial ribosomal protein subunit L20. 
 This family is the essential mitochondrial ribosomal protein 
subunit L20 of fungi.
Length=161

 Score = 159 bits (405),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 72/103 (70%), Gaps = 2/103 (2%)

Query  2    KSDQNPENLPPVFNSPTE--KKYHLTPSDIEEIRKLRLSDPMTWSRWKLAKRFDCSPMFI  59
            +      +LPP+     E  KKYHLTP DIEEIR+LR  DP  W+R KLAK+F CSP+F+
Sbjct  59   RDSPILSDLPPILKYKAEKEKKYHLTPEDIEEIRRLRAEDPEKWTRKKLAKKFGCSPLFV  118

Query  60   GMVCEASPQKKEIQRQVLEAVQSRWGLKRRMAREDRQLRKESW  102
             MV EA  +KK+  +  LEA++SRWG KRR+AREDR+ RKE W
Sbjct  119  SMVTEAPKEKKKEMKAELEAIKSRWGPKRRIAREDRKKRKELW  161



Lambda      K        H        a         alpha
   0.316    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00026551

Length=337


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00026552

Length=352


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00021435

Length=352


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00021436

Length=935


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1205831760


Query= TCONS_00026553

Length=418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  223     2e-72


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 223 bits (572),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 86/227 (38%), Positives = 119/227 (52%), Gaps = 33/227 (15%)

Query  43   CELESEPAIFNVMLREFGVKGV-KVQEVVSLDD-ELMAFLNKPVYGLIFLFRWREDDPDK  100
              LES P +F  +L + GV GV + ++V SLDD EL+A L +PVY LIFLF   E   +K
Sbjct  1    IPLESNPEVFTELLHKLGVSGVLQFEDVYSLDDEELLAMLPRPVYALIFLFPITEAYEEK  60

Query  101  QEASC------PEGLWFANQTASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFT  152
            +E          E ++FA QT  NAC ++ALL+ + N   +  DLG  L+ F+EFT   +
Sbjct  61   REEEGEEIKDEGENVFFAKQTIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLS  120

Query  153  PALRGDAINNFEFVKRIHNSFARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFH  212
            P  RG+A+ N E ++  HNSFAR                      G+      + D  FH
Sbjct  121  PEERGEALENSEELREAHNSFAR---------------------QGQTEAPSDDDDVDFH  159

Query  213  FIAFVPALGKVWKFDGLERQPQALGKYAPDDDWLT-LVRPNILTRMA  258
            FIAFVP  G +++ DGL+  P   G  + D+DWL   VR  I  R+ 
Sbjct  160  FIAFVPVDGHLYELDGLKPGPIDHGPCS-DEDWLLDAVRKVIQERIE  205



Lambda      K        H        a         alpha
   0.319    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00026554

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  205     3e-66


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 205 bits (525),  Expect = 3e-66, Method: Composition-based stats.
 Identities = 80/219 (37%), Positives = 113/219 (52%), Gaps = 31/219 (14%)

Query  4    AIFNVMLREFGVKGV-KVQEVVSLDD-ELMAFLNKPVYGLIFLFRWREDDPDKQEASC--  59
             +F  +L + GV GV + ++V SLDD EL+A L +PVY LIFLF   E   +K+E     
Sbjct  8    EVFTELLHKLGVSGVLQFEDVYSLDDEELLAMLPRPVYALIFLFPITEAYEEKREEEGEE  67

Query  60   ----PEGLWFANQTASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFTPALRGDA  113
                 E ++FA QT  NAC ++ALL+ + N   +  DLG  L+ F+EFT   +P  RG+A
Sbjct  68   IKDEGENVFFAKQTIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLSPEERGEA  127

Query  114  INNFEFVKRIHNSFARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFHFIAFVPA  173
            + N E ++  HNSFAR                      G+      + D  FHFIAFVP 
Sbjct  128  LENSEELREAHNSFAR---------------------QGQTEAPSDDDDVDFHFIAFVPV  166

Query  174  LGKVWKFDGLERQPQALGKYAPDDDWLTLVRPNILTRMA  212
             G +++ DGL+  P   G  + +D  L  VR  I  R+ 
Sbjct  167  DGHLYELDGLKPGPIDHGPCSDEDWLLDAVRKVIQERIE  205



Lambda      K        H        a         alpha
   0.319    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00026556

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00026555

Length=186
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  127     7e-38


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 127 bits (322),  Expect = 7e-38, Method: Composition-based stats.
 Identities = 44/129 (34%), Positives = 63/129 (49%), Gaps = 23/129 (18%)

Query  37   TASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFTPALRGDAINNFEFVKRIHNS  94
            T  NAC ++ALL+ + N   +  DLG  L+ F+EFT   +P  RG+A+ N E ++  HNS
Sbjct  81   TIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLSPEERGEALENSEELREAHNS  140

Query  95   FARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFHFIAFVPALGKVWKFDGLERQ  154
            FA                     R G+      + D  FHFIAFVP  G +++ DGL+  
Sbjct  141  FA---------------------RQGQTEAPSDDDDVDFHFIAFVPVDGHLYELDGLKPG  179

Query  155  PQALGKYAS  163
            P   G  + 
Sbjct  180  PIDHGPCSD  188



Lambda      K        H        a         alpha
   0.322    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00021437

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  211     1e-69


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 211 bits (541),  Expect = 1e-69, Method: Composition-based stats.
 Identities = 78/209 (37%), Positives = 109/209 (52%), Gaps = 31/209 (15%)

Query  43   CELESEPAIFNVMLREFGVKGV-KVQEVVSLDD-ELMAFLNKPVYGLIFLFRWREDDPDK  100
              LES P +F  +L + GV GV + ++V SLDD EL+A L +PVY LIFLF   E   +K
Sbjct  1    IPLESNPEVFTELLHKLGVSGVLQFEDVYSLDDEELLAMLPRPVYALIFLFPITEAYEEK  60

Query  101  QEASC------PEGLWFANQTASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFT  152
            +E          E ++FA QT  NAC ++ALL+ + N   +  DLG  L+ F+EFT   +
Sbjct  61   REEEGEEIKDEGENVFFAKQTIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLS  120

Query  153  PALRGDAINNFEFVKRIHNSFARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFH  212
            P  RG+A+ N E ++  HNSFA                     R G+      + D  FH
Sbjct  121  PEERGEALENSEELREAHNSFA---------------------RQGQTEAPSDDDDVDFH  159

Query  213  FIAFVPALGKVWKFDGLERQPQALGKYAS  241
            FIAFVP  G +++ DGL+  P   G  + 
Sbjct  160  FIAFVPVDGHLYELDGLKPGPIDHGPCSD  188



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00026557

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  211     1e-69


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 211 bits (541),  Expect = 1e-69, Method: Composition-based stats.
 Identities = 78/209 (37%), Positives = 109/209 (52%), Gaps = 31/209 (15%)

Query  43   CELESEPAIFNVMLREFGVKGV-KVQEVVSLDD-ELMAFLNKPVYGLIFLFRWREDDPDK  100
              LES P +F  +L + GV GV + ++V SLDD EL+A L +PVY LIFLF   E   +K
Sbjct  1    IPLESNPEVFTELLHKLGVSGVLQFEDVYSLDDEELLAMLPRPVYALIFLFPITEAYEEK  60

Query  101  QEASC------PEGLWFANQTASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFT  152
            +E          E ++FA QT  NAC ++ALL+ + N   +  DLG  L+ F+EFT   +
Sbjct  61   REEEGEEIKDEGENVFFAKQTIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLS  120

Query  153  PALRGDAINNFEFVKRIHNSFARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFH  212
            P  RG+A+ N E ++  HNSFA                     R G+      + D  FH
Sbjct  121  PEERGEALENSEELREAHNSFA---------------------RQGQTEAPSDDDDVDFH  159

Query  213  FIAFVPALGKVWKFDGLERQPQALGKYAS  241
            FIAFVP  G +++ DGL+  P   G  + 
Sbjct  160  FIAFVPVDGHLYELDGLKPGPIDHGPCSD  188



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00021445

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  222     5e-72


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 222 bits (567),  Expect = 5e-72, Method: Composition-based stats.
 Identities = 84/226 (37%), Positives = 117/226 (52%), Gaps = 31/226 (14%)

Query  43   CELESEPAIFNVMLREFGVKGV-KVQEVVSLDD-ELMAFLNKPVYGLIFLFRWREDDPDK  100
              LES P +F  +L + GV GV + ++V SLDD EL+A L +PVY LIFLF   E   +K
Sbjct  1    IPLESNPEVFTELLHKLGVSGVLQFEDVYSLDDEELLAMLPRPVYALIFLFPITEAYEEK  60

Query  101  QEASC------PEGLWFANQTASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFT  152
            +E          E ++FA QT  NAC ++ALL+ + N   +  DLG  L+ F+EFT   +
Sbjct  61   REEEGEEIKDEGENVFFAKQTIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLS  120

Query  153  PALRGDAINNFEFVKRIHNSFARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFH  212
            P  RG+A+ N E ++  HNSFAR                      G+      + D  FH
Sbjct  121  PEERGEALENSEELREAHNSFAR---------------------QGQTEAPSDDDDVDFH  159

Query  213  FIAFVPALGKVWKFDGLERQPQALGKYAPDDDWLTLVRPNILTRMA  258
            FIAFVP  G +++ DGL+  P   G  + +D  L  VR  I  R+ 
Sbjct  160  FIAFVPVDGHLYELDGLKPGPIDHGPCSDEDWLLDAVRKVIQERIE  205



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00021441

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  137     3e-40


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 137 bits (348),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 73/147 (50%), Gaps = 25/147 (17%)

Query  37   TASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFTPALRGDAINNFEFVKRIHNS  94
            T  NAC ++ALL+ + N   +  DLG  L+ F+EFT   +P  RG+A+ N E ++  HNS
Sbjct  81   TIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLSPEERGEALENSEELREAHNS  140

Query  95   FARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFHFIAFVPALGKVWKFDGLERQ  154
            FAR                      G+      + D  FHFIAFVP  G +++ DGL+  
Sbjct  141  FAR---------------------QGQTEAPSDDDDVDFHFIAFVPVDGHLYELDGLKPG  179

Query  155  PQALGKYAPDDDWLT-LVRPNILTRMA  180
            P   G  + D+DWL   VR  I  R+ 
Sbjct  180  PIDHGPCS-DEDWLLDAVRKVIQERIE  205



Lambda      K        H        a         alpha
   0.318    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00026558

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  219     3e-72


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 219 bits (560),  Expect = 3e-72, Method: Composition-based stats.
 Identities = 83/226 (37%), Positives = 116/226 (51%), Gaps = 31/226 (14%)

Query  43   CELESEPAIFNVMLREFGVKGV-KVQEVVSLDD-ELMAFLNKPVYGLIFLFRWREDDPDK  100
              LES P +F  +L + GV GV + ++V SLDD EL+A L +PVY LIFLF   E   +K
Sbjct  1    IPLESNPEVFTELLHKLGVSGVLQFEDVYSLDDEELLAMLPRPVYALIFLFPITEAYEEK  60

Query  101  QEASC------PEGLWFANQVASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFT  152
            +E          E ++FA Q   NAC ++ALL+ + N   +  DLG  L+ F+EFT   +
Sbjct  61   REEEGEEIKDEGENVFFAKQTIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLS  120

Query  153  PALRGDAINNFEFVKRIHNSFARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFH  212
            P  RG+A+ N E ++  HNSFAR                      G+      + D  FH
Sbjct  121  PEERGEALENSEELREAHNSFAR---------------------QGQTEAPSDDDDVDFH  159

Query  213  FIAFVPALGKVWKFDGLERQPQALGKYAPDDDWLTLVRPNILTRMA  258
            FIAFVP  G +++ DGL+  P   G  + +D  L  VR  I  R+ 
Sbjct  160  FIAFVPVDGHLYELDGLKPGPIDHGPCSDEDWLLDAVRKVIQERIE  205



Lambda      K        H        a         alpha
   0.320    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00021444

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  123     4e-36


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 123 bits (312),  Expect = 4e-36, Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 66/146 (45%), Gaps = 35/146 (24%)

Query  37   TASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFTPALRGDAINNFEFVKRIHNS  94
            T  NAC ++ALL+ + N   +  DLG  L+ F+EFT   +P  RG+A+ N E ++  HNS
Sbjct  81   TIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLSPEERGEALENSEELREAHNS  140

Query  95   FARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFHFIAFVPALGKVWKFDGLERQ  154
            FA                     R G+      + D  FHFIAFVP  G +++ DGL+  
Sbjct  141  FA---------------------RQGQTEAPSDDDDVDFHFIAFVPVDGHLYELDGLKPG  179

Query  155  P------------QALVRPNILTRMA  168
            P               VR  I  R+ 
Sbjct  180  PIDHGPCSDEDWLLDAVRKVIQERIE  205



Lambda      K        H        a         alpha
   0.322    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00021440

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  211     1e-69


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 211 bits (541),  Expect = 1e-69, Method: Composition-based stats.
 Identities = 78/209 (37%), Positives = 109/209 (52%), Gaps = 31/209 (15%)

Query  43   CELESEPAIFNVMLREFGVKGV-KVQEVVSLDD-ELMAFLNKPVYGLIFLFRWREDDPDK  100
              LES P +F  +L + GV GV + ++V SLDD EL+A L +PVY LIFLF   E   +K
Sbjct  1    IPLESNPEVFTELLHKLGVSGVLQFEDVYSLDDEELLAMLPRPVYALIFLFPITEAYEEK  60

Query  101  QEASC------PEGLWFANQTASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFT  152
            +E          E ++FA QT  NAC ++ALL+ + N   +  DLG  L+ F+EFT   +
Sbjct  61   REEEGEEIKDEGENVFFAKQTIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLS  120

Query  153  PALRGDAINNFEFVKRIHNSFARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFH  212
            P  RG+A+ N E ++  HNSFA                     R G+      + D  FH
Sbjct  121  PEERGEALENSEELREAHNSFA---------------------RQGQTEAPSDDDDVDFH  159

Query  213  FIAFVPALGKVWKFDGLERQPQALGKYAS  241
            FIAFVP  G +++ DGL+  P   G  + 
Sbjct  160  FIAFVPVDGHLYELDGLKPGPIDHGPCSD  188



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00021439

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  189     5e-61


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 189 bits (482),  Expect = 5e-61, Method: Composition-based stats.
 Identities = 70/209 (33%), Positives = 99/209 (47%), Gaps = 48/209 (23%)

Query  43   CELESEPAIFNVMLREFGVKGV-KVQEVVSLDD-ELMAFLNKPVYA--------------  86
              LES P +F  +L + GV GV + ++V SLDD EL+A L +PVYA              
Sbjct  1    IPLESNPEVFTELLHKLGVSGVLQFEDVYSLDDEELLAMLPRPVYALIFLFPITEAYEEK  60

Query  87   ---------SCPEGLWFANQVASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFT  135
                        E ++FA Q   NAC ++ALL+ + N   +  DLG  L+ F+EFT   +
Sbjct  61   REEEGEEIKDEGENVFFAKQTIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLS  120

Query  136  PALRGDAINNFEFVKRIHNSFARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFH  195
            P  RG+A+ N E ++  HNSFA                     R G+      + D  FH
Sbjct  121  PEERGEALENSEELREAHNSFA---------------------RQGQTEAPSDDDDVDFH  159

Query  196  FIAFVPALGKVWKFDGLERQPQALGKYAS  224
            FIAFVP  G +++ DGL+  P   G  + 
Sbjct  160  FIAFVPVDGHLYELDGLKPGPIDHGPCSD  188



Lambda      K        H        a         alpha
   0.320    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00021442

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  135     9e-40


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 135 bits (343),  Expect = 9e-40, Method: Composition-based stats.
 Identities = 51/147 (35%), Positives = 72/147 (49%), Gaps = 24/147 (16%)

Query  17   QT-SNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFTPALRGDAINNFEFVKRIHN  73
            QT  NAC ++ALL+ + N   +  DLG  L+ F+EFT   +P  RG+A+ N E ++  HN
Sbjct  80   QTIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLSPEERGEALENSEELREAHN  139

Query  74   SFARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFHFIAFVPALGKVWKFDGLER  133
            SFAR                      G+      + D  FHFIAFVP  G +++ DGL+ 
Sbjct  140  SFAR---------------------QGQTEAPSDDDDVDFHFIAFVPVDGHLYELDGLKP  178

Query  134  QPQALGKYAPDDDWLTLVRPNILTRMA  160
             P   G  + +D  L  VR  I  R+ 
Sbjct  179  GPIDHGPCSDEDWLLDAVRKVIQERIE  205



Lambda      K        H        a         alpha
   0.318    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0728    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00021443

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  211     1e-69


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 211 bits (541),  Expect = 1e-69, Method: Composition-based stats.
 Identities = 78/209 (37%), Positives = 109/209 (52%), Gaps = 31/209 (15%)

Query  43   CELESEPAIFNVMLREFGVKGV-KVQEVVSLDD-ELMAFLNKPVYGLIFLFRWREDDPDK  100
              LES P +F  +L + GV GV + ++V SLDD EL+A L +PVY LIFLF   E   +K
Sbjct  1    IPLESNPEVFTELLHKLGVSGVLQFEDVYSLDDEELLAMLPRPVYALIFLFPITEAYEEK  60

Query  101  QEASC------PEGLWFANQTASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFT  152
            +E          E ++FA QT  NAC ++ALL+ + N   +  DLG  L+ F+EFT   +
Sbjct  61   REEEGEEIKDEGENVFFAKQTIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLS  120

Query  153  PALRGDAINNFEFVKRIHNSFARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFH  212
            P  RG+A+ N E ++  HNSFA                     R G+      + D  FH
Sbjct  121  PEERGEALENSEELREAHNSFA---------------------RQGQTEAPSDDDDVDFH  159

Query  213  FIAFVPALGKVWKFDGLERQPQALGKYAS  241
            FIAFVP  G +++ DGL+  P   G  + 
Sbjct  160  FIAFVPVDGHLYELDGLKPGPIDHGPCSD  188



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00026559

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  210     2e-67


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 210 bits (538),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 81/226 (36%), Positives = 112/226 (50%), Gaps = 43/226 (19%)

Query  43   CELESEPAIFNVMLREFGVKGV-KVQEVVSLDD-ELMAFLNKPVYGLIFLFRWREDDPDK  100
              LES P +F  +L + GV GV + ++V SLDD EL+A L +PVY LIFLF   E   +K
Sbjct  1    IPLESNPEVFTELLHKLGVSGVLQFEDVYSLDDEELLAMLPRPVYALIFLFPITEAYEEK  60

Query  101  QEASC------PEGLWFANQTASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFT  152
            +E          E ++FA QT  NAC ++ALL+ + N   +  DLG  L+ F+EFT   +
Sbjct  61   REEEGEEIKDEGENVFFAKQTIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLS  120

Query  153  PALRGDAINNFEFVKRIHNSFARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFH  212
            P  RG+A+ N E ++  HNSFA                     R G+      + D  FH
Sbjct  121  PEERGEALENSEELREAHNSFA---------------------RQGQTEAPSDDDDVDFH  159

Query  213  FIAFVPALGKVWKFDGLERQP------------QALVRPNILTRMA  246
            FIAFVP  G +++ DGL+  P               VR  I  R+ 
Sbjct  160  FIAFVPVDGHLYELDGLKPGPIDHGPCSDEDWLLDAVRKVIQERIE  205



Lambda      K        H        a         alpha
   0.319    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00026561

Length=418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  223     2e-72


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 223 bits (572),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 86/227 (38%), Positives = 119/227 (52%), Gaps = 33/227 (15%)

Query  43   CELESEPAIFNVMLREFGVKGV-KVQEVVSLDD-ELMAFLNKPVYGLIFLFRWREDDPDK  100
              LES P +F  +L + GV GV + ++V SLDD EL+A L +PVY LIFLF   E   +K
Sbjct  1    IPLESNPEVFTELLHKLGVSGVLQFEDVYSLDDEELLAMLPRPVYALIFLFPITEAYEEK  60

Query  101  QEASC------PEGLWFANQTASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFT  152
            +E          E ++FA QT  NAC ++ALL+ + N   +  DLG  L+ F+EFT   +
Sbjct  61   REEEGEEIKDEGENVFFAKQTIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLS  120

Query  153  PALRGDAINNFEFVKRIHNSFARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFH  212
            P  RG+A+ N E ++  HNSFAR                      G+      + D  FH
Sbjct  121  PEERGEALENSEELREAHNSFAR---------------------QGQTEAPSDDDDVDFH  159

Query  213  FIAFVPALGKVWKFDGLERQPQALGKYAPDDDWLT-LVRPNILTRMA  258
            FIAFVP  G +++ DGL+  P   G  + D+DWL   VR  I  R+ 
Sbjct  160  FIAFVPVDGHLYELDGLKPGPIDHGPCS-DEDWLLDAVRKVIQERIE  205



Lambda      K        H        a         alpha
   0.319    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00026560

Length=418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  223     2e-72


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 223 bits (572),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 86/227 (38%), Positives = 119/227 (52%), Gaps = 33/227 (15%)

Query  43   CELESEPAIFNVMLREFGVKGV-KVQEVVSLDD-ELMAFLNKPVYGLIFLFRWREDDPDK  100
              LES P +F  +L + GV GV + ++V SLDD EL+A L +PVY LIFLF   E   +K
Sbjct  1    IPLESNPEVFTELLHKLGVSGVLQFEDVYSLDDEELLAMLPRPVYALIFLFPITEAYEEK  60

Query  101  QEASC------PEGLWFANQTASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFT  152
            +E          E ++FA QT  NAC ++ALL+ + N   +  DLG  L+ F+EFT   +
Sbjct  61   REEEGEEIKDEGENVFFAKQTIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLS  120

Query  153  PALRGDAINNFEFVKRIHNSFARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFH  212
            P  RG+A+ N E ++  HNSFAR                      G+      + D  FH
Sbjct  121  PEERGEALENSEELREAHNSFAR---------------------QGQTEAPSDDDDVDFH  159

Query  213  FIAFVPALGKVWKFDGLERQPQALGKYAPDDDWLT-LVRPNILTRMA  258
            FIAFVP  G +++ DGL+  P   G  + D+DWL   VR  I  R+ 
Sbjct  160  FIAFVPVDGHLYELDGLKPGPIDHGPCS-DEDWLLDAVRKVIQERIE  205



Lambda      K        H        a         alpha
   0.319    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00021446

Length=126
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  90.3    3e-24


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 90.3 bits (225),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query  37   TASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFTPALRGDAINNFEFVKRIHNS  94
            T  NAC ++ALL+ + N   +  DLG  L+ F+EFT   +P  RG+A+ N E ++  HNS
Sbjct  81   TIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLSPEERGEALENSEELREAHNS  140

Query  95   FAR  97
            FAR
Sbjct  141  FAR  143



Lambda      K        H        a         alpha
   0.325    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00021447

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  126     2e-35


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 126 bits (318),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 66/146 (45%), Gaps = 35/146 (24%)

Query  37   TASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFTPALRGDAINNFEFVKRIHNS  94
            T  NAC ++ALL+ + N   +  DLG  L+ F+EFT   +P  RG+A+ N E ++  HNS
Sbjct  81   TIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLSPEERGEALENSEELREAHNS  140

Query  95   FARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFHFIAFVPALGKVWKFDGLERQ  154
            FA                     R G+      + D  FHFIAFVP  G +++ DGL+  
Sbjct  141  FA---------------------RQGQTEAPSDDDDVDFHFIAFVPVDGHLYELDGLKPG  179

Query  155  P------------QALVRPNILTRMA  168
            P               VR  I  R+ 
Sbjct  180  PIDHGPCSDEDWLLDAVRKVIQERIE  205



Lambda      K        H        a         alpha
   0.319    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00026562

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal ...  139     2e-40


>CDD:460057 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, 
family 1.  
Length=205

 Score = 139 bits (352),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 73/147 (50%), Gaps = 25/147 (17%)

Query  37   TASNACASVALLNIVNNIEGV--DLGENLRHFREFTMPFTPALRGDAINNFEFVKRIHNS  94
            T  NAC ++ALL+ + N   +  DLG  L+ F+EFT   +P  RG+A+ N E ++  HNS
Sbjct  81   TIGNACGTIALLHALLNNPDIPLDLGSTLKKFKEFTKGLSPEERGEALENSEELREAHNS  140

Query  95   FARKMDILNSDLQLKVEATSKRSRSGKDRHDEFETDAGFHFIAFVPALGKVWKFDGLERQ  154
            FAR                      G+      + D  FHFIAFVP  G +++ DGL+  
Sbjct  141  FAR---------------------QGQTEAPSDDDDVDFHFIAFVPVDGHLYELDGLKPG  179

Query  155  PQALGKYAPDDDWLT-LVRPNILTRMA  180
            P   G  + D+DWL   VR  I  R+ 
Sbjct  180  PIDHGPCS-DEDWLLDAVRKVIQERIE  205



Lambda      K        H        a         alpha
   0.319    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00026563

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00021449

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460126 pfam01237, Oxysterol_BP, Oxysterol-binding protein         159     2e-45


>CDD:460126 pfam01237, Oxysterol_BP, Oxysterol-binding protein.  
Length=366

 Score = 159 bits (405),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 99/422 (23%), Positives = 154/422 (36%), Gaps = 135/422 (32%)

Query  23   FLSILRKFVGVADIASVRFSLPAHLLEPRP-------NLEYWNYLDRPETFASIGKSDEP  75
              SIL+K +G  D++ +  ++P    EP         +LEY   LD+    A+  + D+P
Sbjct  2    LWSILKKNIG-KDLSKI--TMPVFFNEPLSLLQRLAEDLEYSELLDK----AA--EEDDP  52

Query  76   LGRMLEVLRF----WFTKDLKYIKGKPCKPYNSTLGEFFRCTWEVYDNAPDLSSPPTAGV  131
            L RML V  F    + +      +    KP+N  LGE F                     
Sbjct  53   LERMLYVAAFAVSGYSS----TRRRV-KKPFNPLLGETFELVRP----------------  91

Query  132  QNGTLMDDGDHGKAVKICYLTEQTSHHPPVSAFFIDCPERGVSARGFD-----QLSAKFT  186
                     D G      ++ EQ SHHPP+SAF  +         G+         +KF 
Sbjct  92   ---------DKG----FRFIAEQVSHHPPISAFHAESK-------GWTFWGEIAPKSKFW  131

Query  187  GTSIRVAPGQHNLGIFVNIE-KRDNEEYQLTHPSAHLGGLLRGALAVSVSDTCFITCSKT  245
            G S+ V    +  G  V++  K+  E Y  T P+ ++  ++ G L V       IT   T
Sbjct  132  GKSLEV----NPEGT-VHLTLKKTGEHYTWTKPTTYVHNIIFGKLWVEHYGEMTITNHTT  186

Query  246  RIKVILQYLEEGWIGRA-QNKVEGLIFRYDPNQDTITRIKDVPDGDVLARISGSWHGEIY  304
              K +L++  +G+      N+V G             ++ D  +G VL  +SG W+  +Y
Sbjct  187  GYKAVLEFKPKGYFSSGRSNEVTG-------------KVYD-KNGKVLYTLSGKWNESLY  232

Query  305  YTVAGTAEPRLLIDVTPLFPVPKTLPPEEDQLSNESLKFWA---------GVTK------  349
                 T +                    E+Q   ES   W          G T       
Sbjct  233  IKDVSTGKKS------------SEDDSVEEQPDGESRLLWKAGPLPNAYYGFTSFAVTLN  280

Query  350  ---------------------AIKEKRYSEATRLKQEIEERQREKAAERQQKNESWQPRF  388
                                 A++     EA   K  +EE+QR +  ER++K E W+PR+
Sbjct  281  ELTDELGKLPPTDSRLRPDQRALENGDIDEAEEEKLRLEEKQRARRKEREEKGEEWKPRW  340

Query  389  FT  390
            F 
Sbjct  341  FK  342



Lambda      K        H        a         alpha
   0.317    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00021451

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460126 pfam01237, Oxysterol_BP, Oxysterol-binding protein         159     2e-45


>CDD:460126 pfam01237, Oxysterol_BP, Oxysterol-binding protein.  
Length=366

 Score = 159 bits (405),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 99/422 (23%), Positives = 154/422 (36%), Gaps = 135/422 (32%)

Query  23   FLSILRKFVGVADIASVRFSLPAHLLEPRP-------NLEYWNYLDRPETFASIGKSDEP  75
              SIL+K +G  D++ +  ++P    EP         +LEY   LD+    A+  + D+P
Sbjct  2    LWSILKKNIG-KDLSKI--TMPVFFNEPLSLLQRLAEDLEYSELLDK----AA--EEDDP  52

Query  76   LGRMLEVLRF----WFTKDLKYIKGKPCKPYNSTLGEFFRCTWEVYDNAPDLSSPPTAGV  131
            L RML V  F    + +      +    KP+N  LGE F                     
Sbjct  53   LERMLYVAAFAVSGYSS----TRRRV-KKPFNPLLGETFELVRP----------------  91

Query  132  QNGTLMDDGDHGKAVKICYLTEQTSHHPPVSAFFIDCPERGVSARGFD-----QLSAKFT  186
                     D G      ++ EQ SHHPP+SAF  +         G+         +KF 
Sbjct  92   ---------DKG----FRFIAEQVSHHPPISAFHAESK-------GWTFWGEIAPKSKFW  131

Query  187  GTSIRVAPGQHNLGIFVNIE-KRDNEEYQLTHPSAHLGGLLRGALAVSVSDTCFITCSKT  245
            G S+ V    +  G  V++  K+  E Y  T P+ ++  ++ G L V       IT   T
Sbjct  132  GKSLEV----NPEGT-VHLTLKKTGEHYTWTKPTTYVHNIIFGKLWVEHYGEMTITNHTT  186

Query  246  RIKVILQYLEEGWIGRA-QNKVEGLIFRYDPNQDTITRIKDVPDGDVLARISGSWHGEIY  304
              K +L++  +G+      N+V G             ++ D  +G VL  +SG W+  +Y
Sbjct  187  GYKAVLEFKPKGYFSSGRSNEVTG-------------KVYD-KNGKVLYTLSGKWNESLY  232

Query  305  YTVAGTAEPRLLIDVTPLFPVPKTLPPEEDQLSNESLKFWA---------GVTK------  349
                 T +                    E+Q   ES   W          G T       
Sbjct  233  IKDVSTGKKS------------SEDDSVEEQPDGESRLLWKAGPLPNAYYGFTSFAVTLN  280

Query  350  ---------------------AIKEKRYSEATRLKQEIEERQREKAAERQQKNESWQPRF  388
                                 A++     EA   K  +EE+QR +  ER++K E W+PR+
Sbjct  281  ELTDELGKLPPTDSRLRPDQRALENGDIDEAEEEKLRLEEKQRARRKEREEKGEEWKPRW  340

Query  389  FT  390
            F 
Sbjct  341  FK  342



Lambda      K        H        a         alpha
   0.317    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00021450

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460126 pfam01237, Oxysterol_BP, Oxysterol-binding protein         159     2e-45


>CDD:460126 pfam01237, Oxysterol_BP, Oxysterol-binding protein.  
Length=366

 Score = 159 bits (405),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 99/422 (23%), Positives = 154/422 (36%), Gaps = 135/422 (32%)

Query  23   FLSILRKFVGVADIASVRFSLPAHLLEPRP-------NLEYWNYLDRPETFASIGKSDEP  75
              SIL+K +G  D++ +  ++P    EP         +LEY   LD+    A+  + D+P
Sbjct  2    LWSILKKNIG-KDLSKI--TMPVFFNEPLSLLQRLAEDLEYSELLDK----AA--EEDDP  52

Query  76   LGRMLEVLRF----WFTKDLKYIKGKPCKPYNSTLGEFFRCTWEVYDNAPDLSSPPTAGV  131
            L RML V  F    + +      +    KP+N  LGE F                     
Sbjct  53   LERMLYVAAFAVSGYSS----TRRRV-KKPFNPLLGETFELVRP----------------  91

Query  132  QNGTLMDDGDHGKAVKICYLTEQTSHHPPVSAFFIDCPERGVSARGFD-----QLSAKFT  186
                     D G      ++ EQ SHHPP+SAF  +         G+         +KF 
Sbjct  92   ---------DKG----FRFIAEQVSHHPPISAFHAESK-------GWTFWGEIAPKSKFW  131

Query  187  GTSIRVAPGQHNLGIFVNIE-KRDNEEYQLTHPSAHLGGLLRGALAVSVSDTCFITCSKT  245
            G S+ V    +  G  V++  K+  E Y  T P+ ++  ++ G L V       IT   T
Sbjct  132  GKSLEV----NPEGT-VHLTLKKTGEHYTWTKPTTYVHNIIFGKLWVEHYGEMTITNHTT  186

Query  246  RIKVILQYLEEGWIGRA-QNKVEGLIFRYDPNQDTITRIKDVPDGDVLARISGSWHGEIY  304
              K +L++  +G+      N+V G             ++ D  +G VL  +SG W+  +Y
Sbjct  187  GYKAVLEFKPKGYFSSGRSNEVTG-------------KVYD-KNGKVLYTLSGKWNESLY  232

Query  305  YTVAGTAEPRLLIDVTPLFPVPKTLPPEEDQLSNESLKFWA---------GVTK------  349
                 T +                    E+Q   ES   W          G T       
Sbjct  233  IKDVSTGKKS------------SEDDSVEEQPDGESRLLWKAGPLPNAYYGFTSFAVTLN  280

Query  350  ---------------------AIKEKRYSEATRLKQEIEERQREKAAERQQKNESWQPRF  388
                                 A++     EA   K  +EE+QR +  ER++K E W+PR+
Sbjct  281  ELTDELGKLPPTDSRLRPDQRALENGDIDEAEEEKLRLEEKQRARRKEREEKGEEWKPRW  340

Query  389  FT  390
            F 
Sbjct  341  FK  342



Lambda      K        H        a         alpha
   0.317    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00026564

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00026565

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00021452

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460126 pfam01237, Oxysterol_BP, Oxysterol-binding protein         138     2e-38


>CDD:460126 pfam01237, Oxysterol_BP, Oxysterol-binding protein.  
Length=366

 Score = 138 bits (350),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 76/335 (23%), Positives = 116/335 (35%), Gaps = 110/335 (33%)

Query  21   CKPYNSTLGEFFRCTWEVYDNAPDLSSPPTAGVQNGTLMDDGDHGKAVKICYLTEQTSHH  80
             KP+N  LGE F                              D G      ++ EQ SHH
Sbjct  75   KKPFNPLLGETFELVRP-------------------------DKG----FRFIAEQVSHH  105

Query  81   PPVSAFFIDCPERGVSARGFD-----QLSAKFTGTSIRVAPGQHNLGIFVNIE-KRDNEE  134
            PP+SAF  +         G+         +KF G S+ V    +  G  V++  K+  E 
Sbjct  106  PPISAFHAESK-------GWTFWGEIAPKSKFWGKSLEV----NPEGT-VHLTLKKTGEH  153

Query  135  YQLTHPSAHLGGLLRGALAVSVSDTCFITCSKTRIKVILQYLEEGWIGRA-QNKVEGLIF  193
            Y  T P+ ++  ++ G L V       IT   T  K +L++  +G+      N+V G   
Sbjct  154  YTWTKPTTYVHNIIFGKLWVEHYGEMTITNHTTGYKAVLEFKPKGYFSSGRSNEVTG---  210

Query  194  RYDPNQDTITRIKDVPDGDVLARISGSWHGEIYYTVAGTAEPRLLIDVTPLFPVPKTLPP  253
                      ++ D  +G VL  +SG W+  +Y     T +                   
Sbjct  211  ----------KVYD-KNGKVLYTLSGKWNESLYIKDVSTGKKS------------SEDDS  247

Query  254  EEDQLSNESLKFWA---------GVTK---------------------------AIKEKR  277
             E+Q   ES   W          G T                            A++   
Sbjct  248  VEEQPDGESRLLWKAGPLPNAYYGFTSFAVTLNELTDELGKLPPTDSRLRPDQRALENGD  307

Query  278  YSEATRLKQEIEERQREKAAERQQKNESWQPRFFT  312
              EA   K  +EE+QR +  ER++K E W+PR+F 
Sbjct  308  IDEAEEEKLRLEEKQRARRKEREEKGEEWKPRWFK  342



Lambda      K        H        a         alpha
   0.317    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00021453

Length=733
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex ...  141     2e-39


>CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 
1.  The three non-SMC (structural maintenance of chromosomes) 
subunits of the mitotic condensation complex are Cnd1-3. 
The whole complex is essential for viability and the condensing 
of chromosomes in mitosis.
Length=162

 Score = 141 bits (358),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 64/107 (60%), Gaps = 3/107 (3%)

Query  607  TVRSNAVIALGDMAVCFNHLIDENTDFLYRRLNDDDVSVKRTCLMTLTFLILAGQVKVKG  666
             +R+ A+  +G   + F +L++  T+ LYRRL D+D  V++T  M +  LIL   VKVKG
Sbjct  1    LIRALAIRTMG--CIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKLILPDMVKVKG  58

Query  667  QLGEMAKCLEDDDKRIADLARMFFTELATKD-NAVYNHFVDMFSLLS  712
             + E+AK LED +  +   A    TE++ KD NA+YN   D+ S LS
Sbjct  59   FISELAKLLEDPNPMVVANALAALTEISEKDPNAIYNLLPDIISKLS  105



Lambda      K        H        a         alpha
   0.318    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 929842128


Query= TCONS_00026566

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  84.2    4e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 84.2 bits (209),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 103/374 (28%), Gaps = 164/374 (44%)

Query  84   FRLVNRIGEGTFSTVYKAEDLLYDHYKNDWDTFQETQSSNWSSPPAKRRRVEESVTKRRK  143
            + ++ ++G G+F TVYKA                                       R  
Sbjct  1    YEVLRKLGSGSFGTVYKA-------------------------------------KHRDT  23

Query  144  PRYVALKKIYVTS----SPLRIQNELELLHDLRGCRSVCPLITAFRHQDQVVAVLPFFPH  199
             + VA+KKI            I  E+++L  L     V  L  AF  +D +  VL +   
Sbjct  24   GKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVR-LYDAFEDKDNLYLVLEYVEG  82

Query  200  TDF--RIQYRTFMV-ADMRHYFRSLFTALNSVHKHNILHRDIKPTNFLYNPELREGVLVD  256
                  +  +      + +   + +   L S                             
Sbjct  83   GSLFDLLSEKGAFSEREAKFIMKQILEGLES-----------------------------  113

Query  257  FGLAEREGSEYTGTCLCANPNFVRRSRLLQSYYYTHCSSSTLSVGYPKNDSRPARRANRA  316
                   GS  T                                                
Sbjct  114  -------GSSLT---------------------------------------------TFV  121

Query  317  GTRGFRAPEVLFKCTSQTTKIDMWSAGVILLTLLGRRFPFFNSADDVDAMIEMASIFGTR  376
            GT  + APEVL        K+D+WS G IL  LL  + PF     +              
Sbjct  122  GTPWYMAPEVL-GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGN--------------  166

Query  377  RMKTAAAMHGQIFETNIPTIGEKGYGWEKLVKWASCVEELTESERQATRLLAGLMELDPY  436
                      +I+E  I         +      ++  EE       A  LL  L++ DP 
Sbjct  167  ----------EIYELIIDQP------YAFPELPSNLSEE-------AKDLLKKLLKKDPS  203

Query  437  KRLSAREALQHEFF  450
            KRL+A +ALQH +F
Sbjct  204  KRLTATQALQHPWF  217



Lambda      K        H        a         alpha
   0.319    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00021454

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00021455

Length=355


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00021457

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  84.2    4e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 84.2 bits (209),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 103/374 (28%), Gaps = 164/374 (44%)

Query  84   FRLVNRIGEGTFSTVYKAEDLLYDHYKNDWDTFQETQSSNWSSPPAKRRRVEESVTKRRK  143
            + ++ ++G G+F TVYKA                                       R  
Sbjct  1    YEVLRKLGSGSFGTVYKA-------------------------------------KHRDT  23

Query  144  PRYVALKKIYVTS----SPLRIQNELELLHDLRGCRSVCPLITAFRHQDQVVAVLPFFPH  199
             + VA+KKI            I  E+++L  L     V  L  AF  +D +  VL +   
Sbjct  24   GKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVR-LYDAFEDKDNLYLVLEYVEG  82

Query  200  TDF--RIQYRTFMV-ADMRHYFRSLFTALNSVHKHNILHRDIKPTNFLYNPELREGVLVD  256
                  +  +      + +   + +   L S                             
Sbjct  83   GSLFDLLSEKGAFSEREAKFIMKQILEGLES-----------------------------  113

Query  257  FGLAEREGSEYTGTCLCANPNFVRRSRLLQSYYYTHCSSSTLSVGYPKNDSRPARRANRA  316
                   GS  T                                                
Sbjct  114  -------GSSLT---------------------------------------------TFV  121

Query  317  GTRGFRAPEVLFKCTSQTTKIDMWSAGVILLTLLGRRFPFFNSADDVDAMIEMASIFGTR  376
            GT  + APEVL        K+D+WS G IL  LL  + PF     +              
Sbjct  122  GTPWYMAPEVL-GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGN--------------  166

Query  377  RMKTAAAMHGQIFETNIPTIGEKGYGWEKLVKWASCVEELTESERQATRLLAGLMELDPY  436
                      +I+E  I         +      ++  EE       A  LL  L++ DP 
Sbjct  167  ----------EIYELIIDQP------YAFPELPSNLSEE-------AKDLLKKLLKKDPS  203

Query  437  KRLSAREALQHEFF  450
            KRL+A +ALQH +F
Sbjct  204  KRLTATQALQHPWF  217



Lambda      K        H        a         alpha
   0.319    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00026567

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  81.5    2e-18


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 81.5 bits (202),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 38/137 (28%), Positives = 53/137 (39%), Gaps = 38/137 (28%)

Query  233  NRAGTRGFRAPEVLFKCTSQTTKIDMWSAGVILLTLLGRRFPFFNSADDVDAMIEMASIF  292
               GT  + APEVL        K+D+WS G IL  LL  + PF     +           
Sbjct  119  TFVGTPWYMAPEVL-GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGN-----------  166

Query  293  GTRRMKTAAAMHGQIFETNIPTIGEKGYGWEKLVKWASCVEELTESERQATRLLAGLMEL  352
                         +I+E  I         +      ++  EE       A  LL  L++ 
Sbjct  167  -------------EIYELIIDQP------YAFPELPSNLSEE-------AKDLLKKLLKK  200

Query  353  DPYKRLSAREALQHEFF  369
            DP KRL+A +ALQH +F
Sbjct  201  DPSKRLTATQALQHPWF  217



Lambda      K        H        a         alpha
   0.321    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00026568

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  84.2    4e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 84.2 bits (209),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 103/374 (28%), Gaps = 164/374 (44%)

Query  84   FRLVNRIGEGTFSTVYKAEDLLYDHYKNDWDTFQETQSSNWSSPPAKRRRVEESVTKRRK  143
            + ++ ++G G+F TVYKA                                       R  
Sbjct  1    YEVLRKLGSGSFGTVYKA-------------------------------------KHRDT  23

Query  144  PRYVALKKIYVTS----SPLRIQNELELLHDLRGCRSVCPLITAFRHQDQVVAVLPFFPH  199
             + VA+KKI            I  E+++L  L     V  L  AF  +D +  VL +   
Sbjct  24   GKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVR-LYDAFEDKDNLYLVLEYVEG  82

Query  200  TDF--RIQYRTFMV-ADMRHYFRSLFTALNSVHKHNILHRDIKPTNFLYNPELREGVLVD  256
                  +  +      + +   + +   L S                             
Sbjct  83   GSLFDLLSEKGAFSEREAKFIMKQILEGLES-----------------------------  113

Query  257  FGLAEREGSEYTGTCLCANPNFVRRSRLLQSYYYTHCSSSTLSVGYPKNDSRPARRANRA  316
                   GS  T                                                
Sbjct  114  -------GSSLT---------------------------------------------TFV  121

Query  317  GTRGFRAPEVLFKCTSQTTKIDMWSAGVILLTLLGRRFPFFNSADDVDAMIEMASIFGTR  376
            GT  + APEVL        K+D+WS G IL  LL  + PF     +              
Sbjct  122  GTPWYMAPEVL-GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGN--------------  166

Query  377  RMKTAAAMHGQIFETNIPTIGEKGYGWEKLVKWASCVEELTESERQATRLLAGLMELDPY  436
                      +I+E  I         +      ++  EE       A  LL  L++ DP 
Sbjct  167  ----------EIYELIIDQP------YAFPELPSNLSEE-------AKDLLKKLLKKDPS  203

Query  437  KRLSAREALQHEFF  450
            KRL+A +ALQH +F
Sbjct  204  KRLTATQALQHPWF  217



Lambda      K        H        a         alpha
   0.319    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00021458

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  84.2    4e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 84.2 bits (209),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 103/374 (28%), Gaps = 164/374 (44%)

Query  84   FRLVNRIGEGTFSTVYKAEDLLYDHYKNDWDTFQETQSSNWSSPPAKRRRVEESVTKRRK  143
            + ++ ++G G+F TVYKA                                       R  
Sbjct  1    YEVLRKLGSGSFGTVYKA-------------------------------------KHRDT  23

Query  144  PRYVALKKIYVTS----SPLRIQNELELLHDLRGCRSVCPLITAFRHQDQVVAVLPFFPH  199
             + VA+KKI            I  E+++L  L     V  L  AF  +D +  VL +   
Sbjct  24   GKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVR-LYDAFEDKDNLYLVLEYVEG  82

Query  200  TDF--RIQYRTFMV-ADMRHYFRSLFTALNSVHKHNILHRDIKPTNFLYNPELREGVLVD  256
                  +  +      + +   + +   L S                             
Sbjct  83   GSLFDLLSEKGAFSEREAKFIMKQILEGLES-----------------------------  113

Query  257  FGLAEREGSEYTGTCLCANPNFVRRSRLLQSYYYTHCSSSTLSVGYPKNDSRPARRANRA  316
                   GS  T                                                
Sbjct  114  -------GSSLT---------------------------------------------TFV  121

Query  317  GTRGFRAPEVLFKCTSQTTKIDMWSAGVILLTLLGRRFPFFNSADDVDAMIEMASIFGTR  376
            GT  + APEVL        K+D+WS G IL  LL  + PF     +              
Sbjct  122  GTPWYMAPEVL-GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGN--------------  166

Query  377  RMKTAAAMHGQIFETNIPTIGEKGYGWEKLVKWASCVEELTESERQATRLLAGLMELDPY  436
                      +I+E  I         +      ++  EE       A  LL  L++ DP 
Sbjct  167  ----------EIYELIIDQP------YAFPELPSNLSEE-------AKDLLKKLLKKDPS  203

Query  437  KRLSAREALQHEFF  450
            KRL+A +ALQH +F
Sbjct  204  KRLTATQALQHPWF  217



Lambda      K        H        a         alpha
   0.319    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00021459

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  90.8    2e-21


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 90.8 bits (226),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 102/352 (29%), Gaps = 142/352 (40%)

Query  81   FRLVNRIGEGTFSTVYKAEDLLYDHYKNDWDTFQETQSSNWSSPPAKRRRVEESVTKRRK  140
            + ++ ++G G+F TVYKA                                       R  
Sbjct  1    YEVLRKLGSGSFGTVYKA-------------------------------------KHRDT  23

Query  141  PRYVALKKIYVTS----SPLRIQNELELLHDLRGCRSVCPLITAFRHQDQVVAVLPFFPH  196
             + VA+KKI            I  E+++L  L     V  L  AF  +D +  VL +   
Sbjct  24   GKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVR-LYDAFEDKDNLYLVLEYVEG  82

Query  197  TDF--RIQYRTFMV-ADMRHYFRSLFTALNSVHKHNILHRDIKPTLWSGGSTCLCANPNF  253
                  +  +      + +   + +   L S                             
Sbjct  83   GSLFDLLSEKGAFSEREAKFIMKQILEGLES-----------------------------  113

Query  254  VRRSRLLQSYYYTHCSSSTLSVGYPKNDSRPARRANRAGTRGFRAPEVLFKCTSQTTKID  313
                    S   T                         GT  + APEVL        K+D
Sbjct  114  -------GSSLTTFV-----------------------GTPWYMAPEVL-GGNPYGPKVD  142

Query  314  MWSAGVILLTLLGRRFPFFNSADDVDAMIEMASIFGTRRMKTAAAMHGQIFETNIPTIGE  373
            +WS G IL  LL  + PF     +                        +I+E  I     
Sbjct  143  VWSLGCILYELLTGKPPFPGINGN------------------------EIYELIIDQP--  176

Query  374  KGYGWEKLVKWASCVEELTESERQATRLLAGLMELDPYKRLSAREALQHEFF  425
                +      ++  EE       A  LL  L++ DP KRL+A +ALQH +F
Sbjct  177  ----YAFPELPSNLSEE-------AKDLLKKLLKKDPSKRLTATQALQHPWF  217



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 573605296


Query= TCONS_00021462

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460207 pfam01426, BAH, BAH domain. This domain has been calle...  104     3e-27
CDD:425683 pfam00439, Bromodomain, Bromodomain. Bromodomains are ...  65.4    8e-14


>CDD:460207 pfam01426, BAH, BAH domain.  This domain has been called BAH 
(Bromo adjacent homology) domain and has also been called ELM1 
and BAM (Bromo adjacent motif) domain. The function of this 
domain is unknown but may be involved in protein-protein 
interaction.
Length=120

 Score = 104 bits (262),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 31/121 (26%), Positives = 59/121 (49%), Gaps = 2/121 (2%)

Query  132  ELWKVGDWVHIQNPNDVTKPIVAQIYRTWQDS-EGEKWVNACWYYRPEQTVHHFEKHFYP  190
            E + VGD+V ++  +      VA+I   ++D+  G+K V   W+YRPE+TVH   K F  
Sbjct  1    ETYSVGDFVLVEPDDADEPYYVARIEELFEDTKNGKKMVRVQWFYRPEETVHRAGKAFNK  60

Query  191  NEVVKTGQYRDHRIEEVVDRCFVMFFTRYNRGRPRGLPPDKEVYVCEARYNEEKHKLNKI  250
            +E+  + +  D  +  ++ +C V+  +      P     + + + CE  Y+ +     K+
Sbjct  61   DELFLSDEEDDVPLSAIIGKCSVLHKSDLESLDPY-KIKEPDDFFCELLYDPKTKSFKKL  119

Query  251  K  251
             
Sbjct  120  P  120


>CDD:425683 pfam00439, Bromodomain, Bromodomain.  Bromodomains are 110 amino 
acid long domains, that are found in many chromatin associated 
proteins. Bromodomains can interact specifically with 
acetylated lysine.
Length=84

 Score = 65.4 bits (160),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 29/66 (44%), Positives = 41/66 (62%), Gaps = 0/66 (0%)

Query  27  FERLPDKATYPDYYVEIKEPIAIDIIKRKSKRKKYNSVDHFMRDMDLMFNNAKAYNQPDS  86
           F    D   YPDYY  IK+P+ +  IK+K +  +Y S+  F+ D+ L+F+NA+ YN P S
Sbjct  17  FLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFLADVKLIFSNARTYNGPGS  76

Query  87  QIYKDA  92
            IYK A
Sbjct  77  VIYKAA  82



Lambda      K        H        a         alpha
   0.316    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00021461

Length=827
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460207 pfam01426, BAH, BAH domain. This domain has been calle...  104     5e-27
CDD:425683 pfam00439, Bromodomain, Bromodomain. Bromodomains are ...  88.1    1e-21


>CDD:460207 pfam01426, BAH, BAH domain.  This domain has been called BAH 
(Bromo adjacent homology) domain and has also been called ELM1 
and BAM (Bromo adjacent motif) domain. The function of this 
domain is unknown but may be involved in protein-protein 
interaction.
Length=120

 Score = 104 bits (261),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 31/121 (26%), Positives = 59/121 (49%), Gaps = 2/121 (2%)

Query  304  ELWKVGDWVHIQNPNDVTKPIVAQIYRTWQDS-EGEKWVNACWYYRPEQTVHHFEKHFYP  362
            E + VGD+V ++  +      VA+I   ++D+  G+K V   W+YRPE+TVH   K F  
Sbjct  1    ETYSVGDFVLVEPDDADEPYYVARIEELFEDTKNGKKMVRVQWFYRPEETVHRAGKAFNK  60

Query  363  NEVVKTGQYRDHRIEEVVDRCFVMFFTRYNRGRPRGLPPDKEVYVCEARYNEEKHKLNKI  422
            +E+  + +  D  +  ++ +C V+  +      P     + + + CE  Y+ +     K+
Sbjct  61   DELFLSDEEDDVPLSAIIGKCSVLHKSDLESLDPY-KIKEPDDFFCELLYDPKTKSFKKL  119

Query  423  K  423
             
Sbjct  120  P  120


>CDD:425683 pfam00439, Bromodomain, Bromodomain.  Bromodomains are 110 amino 
acid long domains, that are found in many chromatin associated 
proteins. Bromodomains can interact specifically with 
acetylated lysine.
Length=84

 Score = 88.1 bits (219),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 33/72 (46%), Positives = 44/72 (61%), Gaps = 0/72 (0%)

Query  17  HDPSRLFQRSVNKRNVPDYYEIIKEPMALSILKQKINKREYKNFAEFVRDCALIPHNAQT  76
           H  +  F   V+    PDYY +IK+PM LS +K+K+   EYK+ AEF+ D  LI  NA+T
Sbjct  11  HPIAAPFLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFLADVKLIFSNART  70

Query  77  YNRPNSQAYEDA  88
           YN P S  Y+ A
Sbjct  71  YNGPGSVIYKAA  82



Lambda      K        H        a         alpha
   0.315    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050796248


Query= TCONS_00021460

Length=863
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460207 pfam01426, BAH, BAH domain. This domain has been calle...  104     6e-27
CDD:425683 pfam00439, Bromodomain, Bromodomain. Bromodomains are ...  87.8    1e-21


>CDD:460207 pfam01426, BAH, BAH domain.  This domain has been called BAH 
(Bromo adjacent homology) domain and has also been called ELM1 
and BAM (Bromo adjacent motif) domain. The function of this 
domain is unknown but may be involved in protein-protein 
interaction.
Length=120

 Score = 104 bits (261),  Expect = 6e-27, Method: Composition-based stats.
 Identities = 31/121 (26%), Positives = 59/121 (49%), Gaps = 2/121 (2%)

Query  340  ELWKVGDWVHIQNPNDVTKPIVAQIYRTWQDS-EGEKWVNACWYYRPEQTVHHFEKHFYP  398
            E + VGD+V ++  +      VA+I   ++D+  G+K V   W+YRPE+TVH   K F  
Sbjct  1    ETYSVGDFVLVEPDDADEPYYVARIEELFEDTKNGKKMVRVQWFYRPEETVHRAGKAFNK  60

Query  399  NEVVKTGQYRDHRIEEVVDRCFVMFFTRYNRGRPRGLPPDKEVYVCEARYNEEKHKLNKI  458
            +E+  + +  D  +  ++ +C V+  +      P     + + + CE  Y+ +     K+
Sbjct  61   DELFLSDEEDDVPLSAIIGKCSVLHKSDLESLDPY-KIKEPDDFFCELLYDPKTKSFKKL  119

Query  459  K  459
             
Sbjct  120  P  120


>CDD:425683 pfam00439, Bromodomain, Bromodomain.  Bromodomains are 110 amino 
acid long domains, that are found in many chromatin associated 
proteins. Bromodomains can interact specifically with 
acetylated lysine.
Length=84

 Score = 87.8 bits (218),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 33/72 (46%), Positives = 44/72 (61%), Gaps = 0/72 (0%)

Query  59   HDPSRLFQRSVNKRNVPDYYEIIKEPMALSILKQKINKREYKNFAEFVRDCALIPHNAQT  118
            H  +  F   V+    PDYY +IK+PM LS +K+K+   EYK+ AEF+ D  LI  NA+T
Sbjct  11   HPIAAPFLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFLADVKLIFSNART  70

Query  119  YNRPNSQAYEDA  130
            YN P S  Y+ A
Sbjct  71   YNGPGSVIYKAA  82


 Score = 65.0 bits (159),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 29/66 (44%), Positives = 41/66 (62%), Gaps = 0/66 (0%)

Query  235  FERLPDKATYPDYYVEIKEPIAIDIIKRKSKRKKYNSVDHFMRDMDLMFNNAKAYNQPDS  294
            F    D   YPDYY  IK+P+ +  IK+K +  +Y S+  F+ D+ L+F+NA+ YN P S
Sbjct  17   FLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFLADVKLIFSNARTYNGPGS  76

Query  295  QIYKDA  300
             IYK A
Sbjct  77   VIYKAA  82



Lambda      K        H        a         alpha
   0.314    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0728    0.140     1.90     42.6     43.6 

Effective search space used: 1102474752


Query= TCONS_00021463

Length=916
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460207 pfam01426, BAH, BAH domain. This domain has been calle...  103     8e-27
CDD:425683 pfam00439, Bromodomain, Bromodomain. Bromodomains are ...  88.1    9e-22


>CDD:460207 pfam01426, BAH, BAH domain.  This domain has been called BAH 
(Bromo adjacent homology) domain and has also been called ELM1 
and BAM (Bromo adjacent motif) domain. The function of this 
domain is unknown but may be involved in protein-protein 
interaction.
Length=120

 Score = 103 bits (260),  Expect = 8e-27, Method: Composition-based stats.
 Identities = 31/121 (26%), Positives = 59/121 (49%), Gaps = 2/121 (2%)

Query  393  ELWKVGDWVHIQNPNDVTKPIVAQIYRTWQDS-EGEKWVNACWYYRPEQTVHHFEKHFYP  451
            E + VGD+V ++  +      VA+I   ++D+  G+K V   W+YRPE+TVH   K F  
Sbjct  1    ETYSVGDFVLVEPDDADEPYYVARIEELFEDTKNGKKMVRVQWFYRPEETVHRAGKAFNK  60

Query  452  NEVVKTGQYRDHRIEEVVDRCFVMFFTRYNRGRPRGLPPDKEVYVCEARYNEEKHKLNKI  511
            +E+  + +  D  +  ++ +C V+  +      P     + + + CE  Y+ +     K+
Sbjct  61   DELFLSDEEDDVPLSAIIGKCSVLHKSDLESLDPY-KIKEPDDFFCELLYDPKTKSFKKL  119

Query  512  K  512
             
Sbjct  120  P  120


>CDD:425683 pfam00439, Bromodomain, Bromodomain.  Bromodomains are 110 amino 
acid long domains, that are found in many chromatin associated 
proteins. Bromodomains can interact specifically with 
acetylated lysine.
Length=84

 Score = 88.1 bits (219),  Expect = 9e-22, Method: Composition-based stats.
 Identities = 33/72 (46%), Positives = 44/72 (61%), Gaps = 0/72 (0%)

Query  59   HDPSRLFQRSVNKRNVPDYYEIIKEPMALSILKQKINKREYKNFAEFVRDCALIPHNAQT  118
            H  +  F   V+    PDYY +IK+PM LS +K+K+   EYK+ AEF+ D  LI  NA+T
Sbjct  11   HPIAAPFLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFLADVKLIFSNART  70

Query  119  YNRPNSQAYEDA  130
            YN P S  Y+ A
Sbjct  71   YNGPGSVIYKAA  82


 Score = 65.4 bits (160),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 29/66 (44%), Positives = 41/66 (62%), Gaps = 0/66 (0%)

Query  288  FERLPDKATYPDYYVEIKEPIAIDIIKRKSKRKKYNSVDHFMRDMDLMFNNAKAYNQPDS  347
            F    D   YPDYY  IK+P+ +  IK+K +  +Y S+  F+ D+ L+F+NA+ YN P S
Sbjct  17   FLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFLADVKLIFSNARTYNGPGS  76

Query  348  QIYKDA  353
             IYK A
Sbjct  77   VIYKAA  82



Lambda      K        H        a         alpha
   0.314    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1178556994


Query= TCONS_00021464

Length=890
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460207 pfam01426, BAH, BAH domain. This domain has been calle...  104     7e-27
CDD:425683 pfam00439, Bromodomain, Bromodomain. Bromodomains are ...  88.1    1e-21


>CDD:460207 pfam01426, BAH, BAH domain.  This domain has been called BAH 
(Bromo adjacent homology) domain and has also been called ELM1 
and BAM (Bromo adjacent motif) domain. The function of this 
domain is unknown but may be involved in protein-protein 
interaction.
Length=120

 Score = 104 bits (261),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 31/121 (26%), Positives = 59/121 (49%), Gaps = 2/121 (2%)

Query  367  ELWKVGDWVHIQNPNDVTKPIVAQIYRTWQDS-EGEKWVNACWYYRPEQTVHHFEKHFYP  425
            E + VGD+V ++  +      VA+I   ++D+  G+K V   W+YRPE+TVH   K F  
Sbjct  1    ETYSVGDFVLVEPDDADEPYYVARIEELFEDTKNGKKMVRVQWFYRPEETVHRAGKAFNK  60

Query  426  NEVVKTGQYRDHRIEEVVDRCFVMFFTRYNRGRPRGLPPDKEVYVCEARYNEEKHKLNKI  485
            +E+  + +  D  +  ++ +C V+  +      P     + + + CE  Y+ +     K+
Sbjct  61   DELFLSDEEDDVPLSAIIGKCSVLHKSDLESLDPY-KIKEPDDFFCELLYDPKTKSFKKL  119

Query  486  K  486
             
Sbjct  120  P  120


>CDD:425683 pfam00439, Bromodomain, Bromodomain.  Bromodomains are 110 amino 
acid long domains, that are found in many chromatin associated 
proteins. Bromodomains can interact specifically with 
acetylated lysine.
Length=84

 Score = 88.1 bits (219),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 33/72 (46%), Positives = 44/72 (61%), Gaps = 0/72 (0%)

Query  59   HDPSRLFQRSVNKRNVPDYYEIIKEPMALSILKQKINKREYKNFAEFVRDCALIPHNAQT  118
            H  +  F   V+    PDYY +IK+PM LS +K+K+   EYK+ AEF+ D  LI  NA+T
Sbjct  11   HPIAAPFLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFLADVKLIFSNART  70

Query  119  YNRPNSQAYEDA  130
            YN P S  Y+ A
Sbjct  71   YNGPGSVIYKAA  82


 Score = 65.4 bits (160),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 29/66 (44%), Positives = 41/66 (62%), Gaps = 0/66 (0%)

Query  262  FERLPDKATYPDYYVEIKEPIAIDIIKRKSKRKKYNSVDHFMRDMDLMFNNAKAYNQPDS  321
            F    D   YPDYY  IK+P+ +  IK+K +  +Y S+  F+ D+ L+F+NA+ YN P S
Sbjct  17   FLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFLADVKLIFSNARTYNGPGS  76

Query  322  QIYKDA  327
             IYK A
Sbjct  77   VIYKAA  82



Lambda      K        H        a         alpha
   0.314    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1141233630


Query= TCONS_00026569

Length=874
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460207 pfam01426, BAH, BAH domain. This domain has been calle...  103     1e-26
CDD:425683 pfam00439, Bromodomain, Bromodomain. Bromodomains are ...  87.8    1e-21


>CDD:460207 pfam01426, BAH, BAH domain.  This domain has been called BAH 
(Bromo adjacent homology) domain and has also been called ELM1 
and BAM (Bromo adjacent motif) domain. The function of this 
domain is unknown but may be involved in protein-protein 
interaction.
Length=120

 Score = 103 bits (259),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 31/121 (26%), Positives = 59/121 (49%), Gaps = 2/121 (2%)

Query  351  ELWKVGDWVHIQNPNDVTKPIVAQIYRTWQDS-EGEKWVNACWYYRPEQTVHHFEKHFYP  409
            E + VGD+V ++  +      VA+I   ++D+  G+K V   W+YRPE+TVH   K F  
Sbjct  1    ETYSVGDFVLVEPDDADEPYYVARIEELFEDTKNGKKMVRVQWFYRPEETVHRAGKAFNK  60

Query  410  NEVVKTGQYRDHRIEEVVDRCFVMFFTRYNRGRPRGLPPDKEVYVCEARYNEEKHKLNKI  469
            +E+  + +  D  +  ++ +C V+  +      P     + + + CE  Y+ +     K+
Sbjct  61   DELFLSDEEDDVPLSAIIGKCSVLHKSDLESLDPY-KIKEPDDFFCELLYDPKTKSFKKL  119

Query  470  K  470
             
Sbjct  120  P  120


>CDD:425683 pfam00439, Bromodomain, Bromodomain.  Bromodomains are 110 amino 
acid long domains, that are found in many chromatin associated 
proteins. Bromodomains can interact specifically with 
acetylated lysine.
Length=84

 Score = 87.8 bits (218),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 33/72 (46%), Positives = 44/72 (61%), Gaps = 0/72 (0%)

Query  17  HDPSRLFQRSVNKRNVPDYYEIIKEPMALSILKQKINKREYKNFAEFVRDCALIPHNAQT  76
           H  +  F   V+    PDYY +IK+PM LS +K+K+   EYK+ AEF+ D  LI  NA+T
Sbjct  11  HPIAAPFLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFLADVKLIFSNART  70

Query  77  YNRPNSQAYEDA  88
           YN P S  Y+ A
Sbjct  71  YNGPGSVIYKAA  82


 Score = 65.0 bits (159),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 29/66 (44%), Positives = 41/66 (62%), Gaps = 0/66 (0%)

Query  246  FERLPDKATYPDYYVEIKEPIAIDIIKRKSKRKKYNSVDHFMRDMDLMFNNAKAYNQPDS  305
            F    D   YPDYY  IK+P+ +  IK+K +  +Y S+  F+ D+ L+F+NA+ YN P S
Sbjct  17   FLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFLADVKLIFSNARTYNGPGS  76

Query  306  QIYKDA  311
             IYK A
Sbjct  77   VIYKAA  82



Lambda      K        H        a         alpha
   0.315    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1118265406


Query= TCONS_00026570

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00021465

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00021466

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00021467

Length=697
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399602 pfam06733, DEAD_2, DEAD_2. This represents a conserved...  199     8e-61
CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain. T...  188     7e-57


>CDD:399602 pfam06733, DEAD_2, DEAD_2.  This represents a conserved region 
within a number of RAD3-like DNA-binding helicases that are 
seemingly ubiquitous - members include proteins of eukaryotic, 
bacterial and archaeal origin. RAD3 is involved in nucleotide 
excision repair, and forms part of the transcription 
factor TFIIH in yeast.
Length=168

 Score = 199 bits (508),  Expect = 8e-61, Method: Composition-based stats.
 Identities = 79/191 (41%), Positives = 111/191 (58%), Gaps = 23/191 (12%)

Query  47   YCSRTHSQLSQFSSELRRVKMPSSMPAELSTSDANTDEVQERVKHLTLGSRKNLCINPKV  106
            YCSRTHSQL Q   ELRR+                     ++++ L LGSRKNLCINP+V
Sbjct  1    YCSRTHSQLEQVVKELRRL------------------PYYKKIRGLILGSRKNLCINPEV  42

Query  107  MSLGNAAAINERCLELQQPGIAAEKRCPYLPSKEDEGQILQFRDHTLATIKDIEDMGKLG  166
            + L     +NERC EL +    A   CP+  + ED   +L+ RD     + DIED+ +LG
Sbjct  43   LKLKKGNLVNERCRELVKSK--ARGSCPFYNNLED---LLKLRDLLGDEVMDIEDLVELG  97

Query  167  KRMGICPYYASRSVLKHSEIVTLPYPLLLQRSARDALDLSIKNHVVIIDEAHNLMDAICN  226
            +++GICPYY SR ++  ++I+ LPY  LL    R++L +++KN +VI DEAHN+ D    
Sbjct  98   EKLGICPYYLSRELIPDADIIILPYNYLLDPKIRESLSINLKNSIVIFDEAHNIEDVCIE  157

Query  227  IHSVTIRLSQL  237
              S +I  SQL
Sbjct  158  SASFSISRSQL  168


>CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain.  This domain 
is found at the C-terminus of DEAD-box helicases.
Length=168

 Score = 188 bits (481),  Expect = 7e-57, Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 98/197 (50%), Gaps = 31/197 (16%)

Query  474  LCQAIPDGVVAFFPSYDYLSRIVAIWRKPLEGEKGETILSLIEREKSILYEGRDMGPKTD  533
            L + IP GV+ FFPSY YL ++    ++           S +E+   I  +  +     +
Sbjct  3    LLKVIPGGVLVFFPSYSYLEKVAERLKE-----------SGLEKGIEIFVQPGEG--SRE  49

Query  534  DLLQEYTRTIDSGQGALLLSVVGGKLSEGINFSDKLGRGVLIIGLPFPNIRSAVWQAKIQ  593
             LL+E+      G+GA+L  V GG  SEGI+F   L R V+I+GLPFPN    V +AK +
Sbjct  50   KLLEEFK---KKGKGAVLFGVCGGSFSEGIDFPGDLLRAVIIVGLPFPNPDDPVVEAKRE  106

Query  594  YVEQKTYNSSSGSEKDRQSIAKAAGKDFYENACMRAVNQCIGRAIRHRNDYAAIVMIDRR  653
            Y++ K  N                  ++Y    +RAVNQ IGR IRH NDY AIV++D R
Sbjct  107  YLDSKGGNP---------------FNEWYLPQAVRAVNQAIGRLIRHENDYGAIVLLDSR  151

Query  654  YEKANIQGKLPAWIKES  670
            +        LP W+   
Sbjct  152  FLTKRYGKLLPKWLPPG  168



Lambda      K        H        a         alpha
   0.319    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 890773160


Query= TCONS_00021468

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain. T...  186     8e-58


>CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain.  This domain 
is found at the C-terminus of DEAD-box helicases.
Length=168

 Score = 186 bits (476),  Expect = 8e-58, Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 98/197 (50%), Gaps = 31/197 (16%)

Query  254  LCQAIPDGVVAFFPSYDYLSRIVAIWRKPLEGEKGETILSLIEREKSILYEGRDMGPKTD  313
            L + IP GV+ FFPSY YL ++    ++           S +E+   I  +  +     +
Sbjct  3    LLKVIPGGVLVFFPSYSYLEKVAERLKE-----------SGLEKGIEIFVQPGEGSR--E  49

Query  314  DLLQEYTRTIDSGQGALLLSVVGGKLSEGINFSDKLGRGVLIIGLPFPNIRSAVWQAKIQ  373
             LL+E+      G+GA+L  V GG  SEGI+F   L R V+I+GLPFPN    V +AK +
Sbjct  50   KLLEEFK---KKGKGAVLFGVCGGSFSEGIDFPGDLLRAVIIVGLPFPNPDDPVVEAKRE  106

Query  374  YVEQKTYNSSSGSEKDRQSIAKAAGKDFYENACMRAVNQCIGRAIRHRNDYAAIVMIDRR  433
            Y++ K  N                  ++Y    +RAVNQ IGR IRH NDY AIV++D R
Sbjct  107  YLDSKGGNP---------------FNEWYLPQAVRAVNQAIGRLIRHENDYGAIVLLDSR  151

Query  434  YEKANIQGKLPAWIKES  450
            +        LP W+   
Sbjct  152  FLTKRYGKLLPKWLPPG  168



Lambda      K        H        a         alpha
   0.320    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593543448


Query= TCONS_00026572

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399602 pfam06733, DEAD_2, DEAD_2. This represents a conserved...  197     4e-62


>CDD:399602 pfam06733, DEAD_2, DEAD_2.  This represents a conserved region 
within a number of RAD3-like DNA-binding helicases that are 
seemingly ubiquitous - members include proteins of eukaryotic, 
bacterial and archaeal origin. RAD3 is involved in nucleotide 
excision repair, and forms part of the transcription 
factor TFIIH in yeast.
Length=168

 Score = 197 bits (503),  Expect = 4e-62, Method: Composition-based stats.
 Identities = 79/191 (41%), Positives = 111/191 (58%), Gaps = 23/191 (12%)

Query  185  YCSRTHSQLSQFSSELRRVKMPSSMPAELSTSDANTDEVQERVKHLTLGSRKNLCINPKV  244
            YCSRTHSQL Q   ELRR+                     ++++ L LGSRKNLCINP+V
Sbjct  1    YCSRTHSQLEQVVKELRRL------------------PYYKKIRGLILGSRKNLCINPEV  42

Query  245  MSLGNAAAINERCLELQQPGIAAEKRCPYLPSKEDEGQILQFRDHTLATIKDIEDMGKLG  304
            + L     +NERC EL +    A   CP+  + ED   +L+ RD     + DIED+ +LG
Sbjct  43   LKLKKGNLVNERCRELVKSK--ARGSCPFYNNLED---LLKLRDLLGDEVMDIEDLVELG  97

Query  305  KRMGICPYYASRSVLKHSEIVTLPYPLLLQRSARDALDLSIKNHVVIIDEAHNLMDAICN  364
            +++GICPYY SR ++  ++I+ LPY  LL    R++L +++KN +VI DEAHN+ D    
Sbjct  98   EKLGICPYYLSRELIPDADIIILPYNYLLDPKIRESLSINLKNSIVIFDEAHNIEDVCIE  157

Query  365  IHSVTIRLSQL  375
              S +I  SQL
Sbjct  158  SASFSISRSQL  168



Lambda      K        H        a         alpha
   0.316    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00026573

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain. T...  176     3e-54


>CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain.  This domain 
is found at the C-terminus of DEAD-box helicases.
Length=168

 Score = 176 bits (449),  Expect = 3e-54, Method: Composition-based stats.
 Identities = 66/186 (35%), Positives = 94/186 (51%), Gaps = 31/186 (17%)

Query  254  LCQAIPDGVVAFFPSYDYLSRIVAIWRKPLEGEKGETILSLIEREKSILYEGRDMGPKTD  313
            L + IP GV+ FFPSY YL ++    ++           S +E+   I  +  +     +
Sbjct  3    LLKVIPGGVLVFFPSYSYLEKVAERLKE-----------SGLEKGIEIFVQPGEG--SRE  49

Query  314  DLLQEYTRTIDSGQGALLLSVVGGKLSEGINFSDKLGRGVLIIGLPFPNIRSAVWQAKIQ  373
             LL+E+      G+GA+L  V GG  SEGI+F   L R V+I+GLPFPN    V +AK +
Sbjct  50   KLLEEFK---KKGKGAVLFGVCGGSFSEGIDFPGDLLRAVIIVGLPFPNPDDPVVEAKRE  106

Query  374  YVEQKTYNSSSGSEKDRQSIAKAAGKDFYENACMRAVNQCIGRAIRHRNDYAAIVMIDRR  433
            Y++ K  N                  ++Y    +RAVNQ IGR IRH NDY AIV++D R
Sbjct  107  YLDSKGGNP---------------FNEWYLPQAVRAVNQAIGRLIRHENDYGAIVLLDSR  151

Query  434  YEKANI  439
            +     
Sbjct  152  FLTKRY  157



Lambda      K        H        a         alpha
   0.320    0.137    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00026575

Length=826
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399602 pfam06733, DEAD_2, DEAD_2. This represents a conserved...  200     2e-60
CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain. T...  188     4e-56


>CDD:399602 pfam06733, DEAD_2, DEAD_2.  This represents a conserved region 
within a number of RAD3-like DNA-binding helicases that are 
seemingly ubiquitous - members include proteins of eukaryotic, 
bacterial and archaeal origin. RAD3 is involved in nucleotide 
excision repair, and forms part of the transcription 
factor TFIIH in yeast.
Length=168

 Score = 200 bits (511),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 79/191 (41%), Positives = 111/191 (58%), Gaps = 23/191 (12%)

Query  206  YCSRTHSQLSQFSSELRRVKMPSSMPAELSTSDANTDEVQERVKHLTLGSRKNLCINPKV  265
            YCSRTHSQL Q   ELRR+                     ++++ L LGSRKNLCINP+V
Sbjct  1    YCSRTHSQLEQVVKELRRL------------------PYYKKIRGLILGSRKNLCINPEV  42

Query  266  MSLGNAAAINERCLELQQPGIAAEKRCPYLPSKEDEGQILQFRDHTLATIKDIEDMGKLG  325
            + L     +NERC EL +    A   CP+  + ED   +L+ RD     + DIED+ +LG
Sbjct  43   LKLKKGNLVNERCRELVKSK--ARGSCPFYNNLED---LLKLRDLLGDEVMDIEDLVELG  97

Query  326  KRMGICPYYASRSVLKHSEIVTLPYPLLLQRSARDALDLSIKNHVVIIDEAHNLMDAICN  385
            +++GICPYY SR ++  ++I+ LPY  LL    R++L +++KN +VI DEAHN+ D    
Sbjct  98   EKLGICPYYLSRELIPDADIIILPYNYLLDPKIRESLSINLKNSIVIFDEAHNIEDVCIE  157

Query  386  IHSVTIRLSQL  396
              S +I  SQL
Sbjct  158  SASFSISRSQL  168


>CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain.  This domain 
is found at the C-terminus of DEAD-box helicases.
Length=168

 Score = 188 bits (480),  Expect = 4e-56, Method: Composition-based stats.
 Identities = 69/194 (36%), Positives = 98/194 (51%), Gaps = 31/194 (16%)

Query  633  LCQAIPDGVVAFFPSYDYLSRIVAIWRKPLEGEKGETILSLIEREKSILYEGRDMGPKTD  692
            L + IP GV+ FFPSY YL ++    ++           S +E+   I  +  +     +
Sbjct  3    LLKVIPGGVLVFFPSYSYLEKVAERLKE-----------SGLEKGIEIFVQPGEGSR--E  49

Query  693  DLLQEYTRTIDSGQGALLLSVVGGKLSEGINFSDKLGRGVLIIGLPFPNIRSAVWQAKIQ  752
             LL+E+      G+GA+L  V GG  SEGI+F   L R V+I+GLPFPN    V +AK +
Sbjct  50   KLLEEFK---KKGKGAVLFGVCGGSFSEGIDFPGDLLRAVIIVGLPFPNPDDPVVEAKRE  106

Query  753  YVEQKTYNSSSGSEKDRQSIAKAAGKDFYENACMRAVNQCIGRAIRHRNDYAAIVMIDRR  812
            Y++ K  N                  ++Y    +RAVNQ IGR IRH NDY AIV++D R
Sbjct  107  YLDSKGGNP---------------FNEWYLPQAVRAVNQAIGRLIRHENDYGAIVLLDSR  151

Query  813  YEKANIQGKLPAWI  826
            +        LP W+
Sbjct  152  FLTKRYGKLLPKWL  165



Lambda      K        H        a         alpha
   0.317    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1049360734


Query= TCONS_00026574

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399602 pfam06733, DEAD_2, DEAD_2. This represents a conserved...  193     9e-58
CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain. T...  188     5e-56


>CDD:399602 pfam06733, DEAD_2, DEAD_2.  This represents a conserved region 
within a number of RAD3-like DNA-binding helicases that are 
seemingly ubiquitous - members include proteins of eukaryotic, 
bacterial and archaeal origin. RAD3 is involved in nucleotide 
excision repair, and forms part of the transcription 
factor TFIIH in yeast.
Length=168

 Score = 193 bits (492),  Expect = 9e-58, Method: Composition-based stats.
 Identities = 79/199 (40%), Positives = 111/199 (56%), Gaps = 31/199 (16%)

Query  206  YCSRTHSQLSQFSSELRRVKMPSSMPAELSTSDANTDEVQERVKHLTLGSRKNLCINPKV  265
            YCSRTHSQL Q   ELRR+                     ++++ L LGSRKNLCINP+V
Sbjct  1    YCSRTHSQLEQVVKELRRL------------------PYYKKIRGLILGSRKNLCINPEV  42

Query  266  MSLGNAAAINERCLELQQPGIAAEKRCPYLPSKEDEGQILQFRDHTLATIKDIEDMGKLG  325
            + L     +NERC EL +    A   CP+  + ED   +L+ RD     + DIED+ +LG
Sbjct  43   LKLKKGNLVNERCRELVKSK--ARGSCPFYNNLED---LLKLRDLLGDEVMDIEDLVELG  97

Query  326  KRMGICPYYASRSVLKHSENVLLKAQKIVTLPYPLLLQRSARDALDLSIKNHVVIIDEAH  385
            +++GICPYY SR ++  ++        I+ LPY  LL    R++L +++KN +VI DEAH
Sbjct  98   EKLGICPYYLSRELIPDAD--------IIILPYNYLLDPKIRESLSINLKNSIVIFDEAH  149

Query  386  NLMDAICNIHSVTIRLSQL  404
            N+ D      S +I  SQL
Sbjct  150  NIEDVCIESASFSISRSQL  168


>CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain.  This domain 
is found at the C-terminus of DEAD-box helicases.
Length=168

 Score = 188 bits (479),  Expect = 5e-56, Method: Composition-based stats.
 Identities = 69/194 (36%), Positives = 98/194 (51%), Gaps = 31/194 (16%)

Query  641  LCQAIPDGVVAFFPSYDYLSRIVAIWRKPLEGEKGETILSLIEREKSILYEGRDMGPKTD  700
            L + IP GV+ FFPSY YL ++    ++           S +E+   I  +  +     +
Sbjct  3    LLKVIPGGVLVFFPSYSYLEKVAERLKE-----------SGLEKGIEIFVQPGEGSR--E  49

Query  701  DLLQEYTRTIDSGQGALLLSVVGGKLSEGINFSDKLGRGVLIIGLPFPNIRSAVWQAKIQ  760
             LL+E+      G+GA+L  V GG  SEGI+F   L R V+I+GLPFPN    V +AK +
Sbjct  50   KLLEEFK---KKGKGAVLFGVCGGSFSEGIDFPGDLLRAVIIVGLPFPNPDDPVVEAKRE  106

Query  761  YVEQKTYNSSSGSEKDRQSIAKAAGKDFYENACMRAVNQCIGRAIRHRNDYAAIVMIDRR  820
            Y++ K  N                  ++Y    +RAVNQ IGR IRH NDY AIV++D R
Sbjct  107  YLDSKGGNP---------------FNEWYLPQAVRAVNQAIGRLIRHENDYGAIVLLDSR  151

Query  821  YEKANIQGKLPAWI  834
            +        LP W+
Sbjct  152  FLTKRYGKLLPKWL  165



Lambda      K        H        a         alpha
   0.317    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1060844846


Query= TCONS_00021469

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399602 pfam06733, DEAD_2, DEAD_2. This represents a conserved...  132     5e-38


>CDD:399602 pfam06733, DEAD_2, DEAD_2.  This represents a conserved region 
within a number of RAD3-like DNA-binding helicases that are 
seemingly ubiquitous - members include proteins of eukaryotic, 
bacterial and archaeal origin. RAD3 is involved in nucleotide 
excision repair, and forms part of the transcription 
factor TFIIH in yeast.
Length=168

 Score = 132 bits (333),  Expect = 5e-38, Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 80/142 (56%), Gaps = 23/142 (16%)

Query  206  YCSRTHSQLSQFSSELRRVKMPSSMPAELSTSDANTDEVQERVKHLTLGSRKNLCINPKV  265
            YCSRTHSQL Q   ELRR+                     ++++ L LGSRKNLCINP+V
Sbjct  1    YCSRTHSQLEQVVKELRRL------------------PYYKKIRGLILGSRKNLCINPEV  42

Query  266  MSLGNAAAINERCLELQQPGIAAEKRCPYLPSKEDEGQILQFRDHTLATIKDIEDMGKLG  325
            + L     +NERC EL +    A   CP+  + ED   +L+ RD     + DIED+ +LG
Sbjct  43   LKLKKGNLVNERCRELVKSK--ARGSCPFYNNLED---LLKLRDLLGDEVMDIEDLVELG  97

Query  326  KRMGICPYYASRSVLKHSEVCF  347
            +++GICPYY SR ++  +++  
Sbjct  98   EKLGICPYYLSRELIPDADIII  119



Lambda      K        H        a         alpha
   0.315    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00021470

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain. T...  186     8e-58


>CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain.  This domain 
is found at the C-terminus of DEAD-box helicases.
Length=168

 Score = 186 bits (476),  Expect = 8e-58, Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 98/197 (50%), Gaps = 31/197 (16%)

Query  254  LCQAIPDGVVAFFPSYDYLSRIVAIWRKPLEGEKGETILSLIEREKSILYEGRDMGPKTD  313
            L + IP GV+ FFPSY YL ++    ++           S +E+   I  +  +     +
Sbjct  3    LLKVIPGGVLVFFPSYSYLEKVAERLKE-----------SGLEKGIEIFVQPGEGSR--E  49

Query  314  DLLQEYTRTIDSGQGALLLSVVGGKLSEGINFSDKLGRGVLIIGLPFPNIRSAVWQAKIQ  373
             LL+E+      G+GA+L  V GG  SEGI+F   L R V+I+GLPFPN    V +AK +
Sbjct  50   KLLEEFK---KKGKGAVLFGVCGGSFSEGIDFPGDLLRAVIIVGLPFPNPDDPVVEAKRE  106

Query  374  YVEQKTYNSSSGSEKDRQSIAKAAGKDFYENACMRAVNQCIGRAIRHRNDYAAIVMIDRR  433
            Y++ K  N                  ++Y    +RAVNQ IGR IRH NDY AIV++D R
Sbjct  107  YLDSKGGNP---------------FNEWYLPQAVRAVNQAIGRLIRHENDYGAIVLLDSR  151

Query  434  YEKANIQGKLPAWIKES  450
            +        LP W+   
Sbjct  152  FLTKRYGKLLPKWLPPG  168



Lambda      K        H        a         alpha
   0.320    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593543448


Query= TCONS_00021471

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain. T...  186     8e-58


>CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain.  This domain 
is found at the C-terminus of DEAD-box helicases.
Length=168

 Score = 186 bits (476),  Expect = 8e-58, Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 98/197 (50%), Gaps = 31/197 (16%)

Query  254  LCQAIPDGVVAFFPSYDYLSRIVAIWRKPLEGEKGETILSLIEREKSILYEGRDMGPKTD  313
            L + IP GV+ FFPSY YL ++    ++           S +E+   I  +  +     +
Sbjct  3    LLKVIPGGVLVFFPSYSYLEKVAERLKE-----------SGLEKGIEIFVQPGEGSR--E  49

Query  314  DLLQEYTRTIDSGQGALLLSVVGGKLSEGINFSDKLGRGVLIIGLPFPNIRSAVWQAKIQ  373
             LL+E+      G+GA+L  V GG  SEGI+F   L R V+I+GLPFPN    V +AK +
Sbjct  50   KLLEEFK---KKGKGAVLFGVCGGSFSEGIDFPGDLLRAVIIVGLPFPNPDDPVVEAKRE  106

Query  374  YVEQKTYNSSSGSEKDRQSIAKAAGKDFYENACMRAVNQCIGRAIRHRNDYAAIVMIDRR  433
            Y++ K  N                  ++Y    +RAVNQ IGR IRH NDY AIV++D R
Sbjct  107  YLDSKGGNP---------------FNEWYLPQAVRAVNQAIGRLIRHENDYGAIVLLDSR  151

Query  434  YEKANIQGKLPAWIKES  450
            +        LP W+   
Sbjct  152  FLTKRYGKLLPKWLPPG  168



Lambda      K        H        a         alpha
   0.320    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593543448


Query= TCONS_00021472

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain. T...  186     8e-58


>CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain.  This domain 
is found at the C-terminus of DEAD-box helicases.
Length=168

 Score = 186 bits (476),  Expect = 8e-58, Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 98/197 (50%), Gaps = 31/197 (16%)

Query  254  LCQAIPDGVVAFFPSYDYLSRIVAIWRKPLEGEKGETILSLIEREKSILYEGRDMGPKTD  313
            L + IP GV+ FFPSY YL ++    ++           S +E+   I  +  +     +
Sbjct  3    LLKVIPGGVLVFFPSYSYLEKVAERLKE-----------SGLEKGIEIFVQPGEGSR--E  49

Query  314  DLLQEYTRTIDSGQGALLLSVVGGKLSEGINFSDKLGRGVLIIGLPFPNIRSAVWQAKIQ  373
             LL+E+      G+GA+L  V GG  SEGI+F   L R V+I+GLPFPN    V +AK +
Sbjct  50   KLLEEFK---KKGKGAVLFGVCGGSFSEGIDFPGDLLRAVIIVGLPFPNPDDPVVEAKRE  106

Query  374  YVEQKTYNSSSGSEKDRQSIAKAAGKDFYENACMRAVNQCIGRAIRHRNDYAAIVMIDRR  433
            Y++ K  N                  ++Y    +RAVNQ IGR IRH NDY AIV++D R
Sbjct  107  YLDSKGGNP---------------FNEWYLPQAVRAVNQAIGRLIRHENDYGAIVLLDSR  151

Query  434  YEKANIQGKLPAWIKES  450
            +        LP W+   
Sbjct  152  FLTKRYGKLLPKWLPPG  168



Lambda      K        H        a         alpha
   0.320    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593543448


Query= TCONS_00026576

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399602 pfam06733, DEAD_2, DEAD_2. This represents a conserved...  132     5e-38


>CDD:399602 pfam06733, DEAD_2, DEAD_2.  This represents a conserved region 
within a number of RAD3-like DNA-binding helicases that are 
seemingly ubiquitous - members include proteins of eukaryotic, 
bacterial and archaeal origin. RAD3 is involved in nucleotide 
excision repair, and forms part of the transcription 
factor TFIIH in yeast.
Length=168

 Score = 132 bits (333),  Expect = 5e-38, Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 80/142 (56%), Gaps = 23/142 (16%)

Query  206  YCSRTHSQLSQFSSELRRVKMPSSMPAELSTSDANTDEVQERVKHLTLGSRKNLCINPKV  265
            YCSRTHSQL Q   ELRR+                     ++++ L LGSRKNLCINP+V
Sbjct  1    YCSRTHSQLEQVVKELRRL------------------PYYKKIRGLILGSRKNLCINPEV  42

Query  266  MSLGNAAAINERCLELQQPGIAAEKRCPYLPSKEDEGQILQFRDHTLATIKDIEDMGKLG  325
            + L     +NERC EL +    A   CP+  + ED   +L+ RD     + DIED+ +LG
Sbjct  43   LKLKKGNLVNERCRELVKSK--ARGSCPFYNNLED---LLKLRDLLGDEVMDIEDLVELG  97

Query  326  KRMGICPYYASRSVLKHSEVCF  347
            +++GICPYY SR ++  +++  
Sbjct  98   EKLGICPYYLSRELIPDADIII  119



Lambda      K        H        a         alpha
   0.315    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00021473

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain. T...  186     8e-58


>CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain.  This domain 
is found at the C-terminus of DEAD-box helicases.
Length=168

 Score = 186 bits (476),  Expect = 8e-58, Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 98/197 (50%), Gaps = 31/197 (16%)

Query  254  LCQAIPDGVVAFFPSYDYLSRIVAIWRKPLEGEKGETILSLIEREKSILYEGRDMGPKTD  313
            L + IP GV+ FFPSY YL ++    ++           S +E+   I  +  +     +
Sbjct  3    LLKVIPGGVLVFFPSYSYLEKVAERLKE-----------SGLEKGIEIFVQPGEGSR--E  49

Query  314  DLLQEYTRTIDSGQGALLLSVVGGKLSEGINFSDKLGRGVLIIGLPFPNIRSAVWQAKIQ  373
             LL+E+      G+GA+L  V GG  SEGI+F   L R V+I+GLPFPN    V +AK +
Sbjct  50   KLLEEFK---KKGKGAVLFGVCGGSFSEGIDFPGDLLRAVIIVGLPFPNPDDPVVEAKRE  106

Query  374  YVEQKTYNSSSGSEKDRQSIAKAAGKDFYENACMRAVNQCIGRAIRHRNDYAAIVMIDRR  433
            Y++ K  N                  ++Y    +RAVNQ IGR IRH NDY AIV++D R
Sbjct  107  YLDSKGGNP---------------FNEWYLPQAVRAVNQAIGRLIRHENDYGAIVLLDSR  151

Query  434  YEKANIQGKLPAWIKES  450
            +        LP W+   
Sbjct  152  FLTKRYGKLLPKWLPPG  168



Lambda      K        H        a         alpha
   0.320    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593543448


Query= TCONS_00021475

Length=782
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399602 pfam06733, DEAD_2, DEAD_2. This represents a conserved...  192     1e-57
CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain. T...  188     2e-56


>CDD:399602 pfam06733, DEAD_2, DEAD_2.  This represents a conserved region 
within a number of RAD3-like DNA-binding helicases that are 
seemingly ubiquitous - members include proteins of eukaryotic, 
bacterial and archaeal origin. RAD3 is involved in nucleotide 
excision repair, and forms part of the transcription 
factor TFIIH in yeast.
Length=168

 Score = 192 bits (489),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 79/199 (40%), Positives = 111/199 (56%), Gaps = 31/199 (16%)

Query  124  YCSRTHSQLSQFSSELRRVKMPSSMPAELSTSDANTDEVQERVKHLTLGSRKNLCINPKV  183
            YCSRTHSQL Q   ELRR+                     ++++ L LGSRKNLCINP+V
Sbjct  1    YCSRTHSQLEQVVKELRRL------------------PYYKKIRGLILGSRKNLCINPEV  42

Query  184  MSLGNAAAINERCLELQQPGIAAEKRCPYLPSKEDEGQILQFRDHTLATIKDIEDMGKLG  243
            + L     +NERC EL +    A   CP+  + ED   +L+ RD     + DIED+ +LG
Sbjct  43   LKLKKGNLVNERCRELVKSK--ARGSCPFYNNLED---LLKLRDLLGDEVMDIEDLVELG  97

Query  244  KRMGICPYYASRSVLKHSENVLLKAQKIVTLPYPLLLQRSARDALDLSIKNHVVIIDEAH  303
            +++GICPYY SR ++  ++        I+ LPY  LL    R++L +++KN +VI DEAH
Sbjct  98   EKLGICPYYLSRELIPDAD--------IIILPYNYLLDPKIRESLSINLKNSIVIFDEAH  149

Query  304  NLMDAICNIHSVTIRLSQL  322
            N+ D      S +I  SQL
Sbjct  150  NIEDVCIESASFSISRSQL  168


>CDD:463840 pfam13307, Helicase_C_2, Helicase C-terminal domain.  This domain 
is found at the C-terminus of DEAD-box helicases.
Length=168

 Score = 188 bits (480),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 98/197 (50%), Gaps = 31/197 (16%)

Query  559  LCQAIPDGVVAFFPSYDYLSRIVAIWRKPLEGEKGETILSLIEREKSILYEGRDMGPKTD  618
            L + IP GV+ FFPSY YL ++    ++           S +E+   I  +  +     +
Sbjct  3    LLKVIPGGVLVFFPSYSYLEKVAERLKE-----------SGLEKGIEIFVQPGEG--SRE  49

Query  619  DLLQEYTRTIDSGQGALLLSVVGGKLSEGINFSDKLGRGVLIIGLPFPNIRSAVWQAKIQ  678
             LL+E+      G+GA+L  V GG  SEGI+F   L R V+I+GLPFPN    V +AK +
Sbjct  50   KLLEEFK---KKGKGAVLFGVCGGSFSEGIDFPGDLLRAVIIVGLPFPNPDDPVVEAKRE  106

Query  679  YVEQKTYNSSSGSEKDRQSIAKAAGKDFYENACMRAVNQCIGRAIRHRNDYAAIVMIDRR  738
            Y++ K  N                  ++Y    +RAVNQ IGR IRH NDY AIV++D R
Sbjct  107  YLDSKGGNP---------------FNEWYLPQAVRAVNQAIGRLIRHENDYGAIVLLDSR  151

Query  739  YEKANIQGKLPAWIKES  755
            +        LP W+   
Sbjct  152  FLTKRYGKLLPKWLPPG  168



Lambda      K        H        a         alpha
   0.318    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0822    0.140     1.90     42.6     43.6 

Effective search space used: 1001144576


Query= TCONS_00021476

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459951 pfam00828, Ribosomal_L27A, Ribosomal proteins 50S-L15,...  92.6    1e-25


>CDD:459951 pfam00828, Ribosomal_L27A, Ribosomal proteins 50S-L15, 50S-L18e, 
60S-L27A.  This family includes higher eukaryotic ribosomal 
60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal 
mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast 
L18-3 proteins.
Length=125

 Score = 92.6 bits (231),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 55/140 (39%), Gaps = 38/140 (27%)

Query  28   HPGGRGLAGGQHHHRTNLDKFHPGY----------FGKVGMRYFHKTNQQFWKPTINLDK  77
              GGRG  G +        K  PG+            K G +  H+    F    +NL K
Sbjct  3    KTGGRGHKGQKSRS----GKVRPGFEGGQMPLYRRLPKRGFK--HREYNIFRYAPVNLGK  56

Query  78   LWSLIPTETREAYLSGQKTDTAPVIDLLSL-----------GYSKVLGKGRIPEIPIVVR  126
            L  LI              D   VIDL +L           G  K+LGKG +    + V+
Sbjct  57   LQELIDEGRL---------DEGKVIDLEALKEAGLVKKKKDGV-KLLGKGELT-KKLTVK  105

Query  127  ARYFSRDAEQKIKEAGGVVE  146
            A  FS+ A +KI+ AGG VE
Sbjct  106  ASAFSKSAIEKIEAAGGKVE  125



Lambda      K        H        a         alpha
   0.320    0.139    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00026577

Length=1820


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2300197280


Query= TCONS_00026578

Length=1807


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2282812068


Query= TCONS_00026579

Length=1807


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2282812068


Query= TCONS_00021478

Length=1807


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2282812068


Query= TCONS_00021479

Length=1820


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2300197280


Query= TCONS_00026580

Length=1807


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2282812068


Query= TCONS_00021480

Length=1807


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0718    0.140     1.90     42.6     43.6 

Effective search space used: 2282812068


Query= TCONS_00026581

Length=1820


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2300197280


Query= TCONS_00026582

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family...  484     1e-167
CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase. Thi...  271     2e-88 


>CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family 20.  Members 
of this family belong to glycosyl transferase family 
20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions 
in the subunits of yeast trehalose-6-phosphate synthase/phosphate 
complex,.
Length=471

 Score = 484 bits (1247),  Expect = 1e-167, Method: Composition-based stats.
 Identities = 176/351 (50%), Positives = 241/351 (69%), Gaps = 11/351 (3%)

Query  1    MNRLFADRIIEEYQEGDIVWIHDYHLFLLPSLLRQRIPNIYIGFFLHAPFPSSEFMRCLA  60
            +N+LFAD+I+E Y++GD++WIHDYHL LLP +LR+R+P+  IGFFLH PFPSSE  RCL 
Sbjct  125  VNKLFADKIVEVYKDGDLIWIHDYHLMLLPQMLRKRLPDAKIGFFLHTPFPSSEIFRCLP  184

Query  61   KRKEVLTGVLGANMIGFQTFSYSRHFSSCCTRVLGFD-SNNAGVDAYGAHVAVDVFPIGI  119
             R+E+L G+LGA++IGF T+ Y+RHF SCC+R+LG +  ++ GV+  G  V+V  FPIGI
Sbjct  185  VREEILEGLLGADLIGFHTYDYARHFLSCCSRLLGLETRSDGGVEYGGRTVSVKAFPIGI  244

Query  120  DVKAIQKAAYGYPEIEEAVVGLRTLYAGK-KIIVGRDRLDSVRGVAQKLQAFEQFLERYP  178
            D   I+      P ++E +  L+  +  K K+IVG DRLD ++G+ QKL AFE+FLE YP
Sbjct  245  DPGRIESGL-ASPSVQEKIKELKERFGNKKKLIVGVDRLDYIKGIPQKLLAFERFLEEYP  303

Query  179  EWREKVVLIQVTSPTSVEEEKEDPE--NKIASQISNLVSTINGRFGSISFSPVKYYPQYL  236
            EWR KVVL+Q+  P+       D E    + SQI  LV  ING FG++ ++PV +  + L
Sbjct  304  EWRGKVVLVQIAVPSR-----GDVEEYQNLRSQIEELVGRINGEFGTLDYTPVHFLHRPL  358

Query  237  SQHEYFALLRVADVGLITTVRDGMNTTSLEYILCQHNTHGPLILSEFSGTAGTLSS-AIH  295
               E  AL  VADV L+T++RDGMN  + EY+ CQ    G LILSEF+G A +L+  AI 
Sbjct  359  DFDELIALYAVADVCLVTSLRDGMNLVAYEYVACQQGRKGVLILSEFAGAAQSLNDGAIL  418

Query  296  INPWDTTGVAEAINRALTMSPEEKKAQHVKLYKHVTTNTISTWSNHFVTRL  346
            +NPWD   VAEAIN ALTMS EE+K +H KLYK+++ +    W+  F++ L
Sbjct  419  VNPWDIDEVAEAINEALTMSEEERKKRHKKLYKYISKHDSQHWAESFLSDL  469


>CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase.  This family 
consist of trehalose-phosphatases EC:3.1.3.12 these enzyme 
catalyze the de-phosphorylation of trehalose-6-phosphate to 
trehalose and orthophosphate. The aligned region is present 
in trehalose-phosphatases and comprises the entire length 
of the protein it is also found in the C-terminus of trehalose-6-phosphate 
synthase EC:2.4.1.15 adjacent to the trehalose-6-phosphate 
synthase domain - pfam00982. It would appear that 
the two equivalent genes in the E. coli otsBA operon otsA 
the trehalose-6-phosphate synthase and otsB trehalose-phosphatase 
(this family) have undergone gene fusion in most eukaryotes. 
Trehalose is a common disaccharide of bacteria, fungi 
and invertebrates that appears to play a major role in desiccation 
tolerance.
Length=234

 Score = 271 bits (696),  Expect = 2e-88, Method: Composition-based stats.
 Identities = 97/199 (49%), Positives = 131/199 (66%), Gaps = 2/199 (1%)

Query  380  MFDYDGTLTPIVKDPQAAIPSDRVLRTLKTLAADPRNAVWIISGRDQAFLDEWMGHIPEL  439
              DYDGTL+PIV DP AA+PSDR+L  L+ LA+DP N V IISGR +   D     +P L
Sbjct  1    FLDYDGTLSPIVSDPIAAVPSDRMLSALQDLASDPPNTVAIISGRSRQEED-LFVGVPNL  59

Query  440  GLSAEHGCFIRQPRSDDWENLAESSDMGWQKEVMEVFQHFTERTQGSFIERKRVALTWHY  499
            GL+AEHG F+R P   DW N AE  D+ W+KEV  + +++TERT GS++E K+ AL+WHY
Sbjct  60   GLAAEHGAFVRLPGGGDWYNQAEVEDLPWKKEVAPILEYYTERTPGSYVENKKSALSWHY  119

Query  500  RRADPEYGAFQARECRKMLEETVAKRWEVEVMAGKANLEVRPTFVNKGFIAARLVQEYGT  559
            R AD ++G+FQA+E  + LE  +     + V  GK  +EVRP  V+KG     +++E G+
Sbjct  120  RNADDDFGSFQAKELAEHLESVLQDNPPLRVTQGKKVVEVRPVGVSKGKAVEFILEELGS  179

Query  560  DPAQAPEFVLCLGDDFTDE  578
                 P+F LC+GDD TDE
Sbjct  180  AG-SLPDFPLCIGDDRTDE  197



Lambda      K        H        a         alpha
   0.321    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 750202856


Query= TCONS_00026583

Length=949
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family...  524     9e-179
CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase. Thi...  293     3e-93 


>CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family 20.  Members 
of this family belong to glycosyl transferase family 
20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions 
in the subunits of yeast trehalose-6-phosphate synthase/phosphate 
complex,.
Length=471

 Score = 524 bits (1352),  Expect = 9e-179, Method: Composition-based stats.
 Identities = 189/397 (48%), Positives = 263/397 (66%), Gaps = 14/397 (4%)

Query  273  IFLEDQ---GRWRRYAEKELYPLLHYKQHGPTDGRSERKWWGDYVRMNRLFADRIIEEYQ  329
            +FL D+     +  ++   L+PL HY      +   +R WW  YV++N+LFAD+I+E Y+
Sbjct  79   VFLSDELFDSYYNGFSNSILWPLFHYMIPPNNEDAFDRSWWDAYVKVNKLFADKIVEVYK  138

Query  330  EGDIVWIHDYHLFLLPSLLRQRIPNIYIGFFLHAPFPSSEFMRCLAKRKEVLTGVLGANM  389
            +GD++WIHDYHL LLP +LR+R+P+  IGFFLH PFPSSE  RCL  R+E+L G+LGA++
Sbjct  139  DGDLIWIHDYHLMLLPQMLRKRLPDAKIGFFLHTPFPSSEIFRCLPVREEILEGLLGADL  198

Query  390  IGFQTFSYSRHFSSCCTRVLGFD-SNNAGVDAYGAHVAVDVFPIGIDVKAIQKAAYGYPE  448
            IGF T+ Y+RHF SCC+R+LG +  ++ GV+  G  V+V  FPIGID   I+      P 
Sbjct  199  IGFHTYDYARHFLSCCSRLLGLETRSDGGVEYGGRTVSVKAFPIGIDPGRIESGL-ASPS  257

Query  449  IEEAVVGLRTLYAGK-KIIVGRDRLDSVRGVAQKLQAFEQFLERYPEWREKVVLIQVTSP  507
            ++E +  L+  +  K K+IVG DRLD ++G+ QKL AFE+FLE YPEWR KVVL+Q+  P
Sbjct  258  VQEKIKELKERFGNKKKLIVGVDRLDYIKGIPQKLLAFERFLEEYPEWRGKVVLVQIAVP  317

Query  508  TSVEEEKEDPE--NKIASQISNLVSTINGRFGSISFSPVKYYPQYLSQHEYFALLRVADV  565
            +       D E    + SQI  LV  ING FG++ ++PV +  + L   E  AL  VADV
Sbjct  318  SR-----GDVEEYQNLRSQIEELVGRINGEFGTLDYTPVHFLHRPLDFDELIALYAVADV  372

Query  566  GLITTVRDGMNTTSLEYILCQHNTHGPLILSEFSGTAGTLSS-AIHINPWDTTGVAEAIN  624
             L+T++RDGMN  + EY+ CQ    G LILSEF+G A +L+  AI +NPWD   VAEAIN
Sbjct  373  CLVTSLRDGMNLVAYEYVACQQGRKGVLILSEFAGAAQSLNDGAILVNPWDIDEVAEAIN  432

Query  625  RALTMSPEEKKAQHVKLYKHVTTNTISTWSNHFVTRL  661
             ALTMS EE+K +H KLYK+++ +    W+  F++ L
Sbjct  433  EALTMSEEERKKRHKKLYKYISKHDSQHWAESFLSDL  469


>CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase.  This family 
consist of trehalose-phosphatases EC:3.1.3.12 these enzyme 
catalyze the de-phosphorylation of trehalose-6-phosphate to 
trehalose and orthophosphate. The aligned region is present 
in trehalose-phosphatases and comprises the entire length 
of the protein it is also found in the C-terminus of trehalose-6-phosphate 
synthase EC:2.4.1.15 adjacent to the trehalose-6-phosphate 
synthase domain - pfam00982. It would appear that 
the two equivalent genes in the E. coli otsBA operon otsA 
the trehalose-6-phosphate synthase and otsB trehalose-phosphatase 
(this family) have undergone gene fusion in most eukaryotes. 
Trehalose is a common disaccharide of bacteria, fungi 
and invertebrates that appears to play a major role in desiccation 
tolerance.
Length=234

 Score = 293 bits (751),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 112/238 (47%), Positives = 153/238 (64%), Gaps = 6/238 (3%)

Query  695  MFDYDGTLTPIVKDPQAAIPSDRVLRTLKTLAADPRNAVWIISGRDQAFLDEWMGHIPEL  754
              DYDGTL+PIV DP AA+PSDR+L  L+ LA+DP N V IISGR +   D     +P L
Sbjct  1    FLDYDGTLSPIVSDPIAAVPSDRMLSALQDLASDPPNTVAIISGRSRQEED-LFVGVPNL  59

Query  755  GLSAEHGCFIRQPRSDDWENLAESSDMGWQKEVMEVFQHFTERTQGSFIERKRVALTWHY  814
            GL+AEHG F+R P   DW N AE  D+ W+KEV  + +++TERT GS++E K+ AL+WHY
Sbjct  60   GLAAEHGAFVRLPGGGDWYNQAEVEDLPWKKEVAPILEYYTERTPGSYVENKKSALSWHY  119

Query  815  RRADPEYGAFQARECRKMLEETVAKRWEVEVMAGKANLEVRPTFVNKGFIAARLVQEYGT  874
            R AD ++G+FQA+E  + LE  +     + V  GK  +EVRP  V+KG     +++E G+
Sbjct  120  RNADDDFGSFQAKELAEHLESVLQDNPPLRVTQGKKVVEVRPVGVSKGKAVEFILEELGS  179

Query  875  DPAQAPEFVLCLGDDFTDEDMFRALKKSGLPAGH--VFSVTVGASSKQTEASWHLLEP  930
                 P+F LC+GDD TDEDMF  L+ +        VF+V+VG  SK + AS+ L +P
Sbjct  180  AG-SLPDFPLCIGDDRTDEDMFSVLRPTKPSGVGIEVFAVSVG--SKPSSASYFLDDP  234



Lambda      K        H        a         alpha
   0.317    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1207742228


Query= TCONS_00021482

Length=949
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family...  524     9e-179
CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase. Thi...  293     3e-93 


>CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family 20.  Members 
of this family belong to glycosyl transferase family 
20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions 
in the subunits of yeast trehalose-6-phosphate synthase/phosphate 
complex,.
Length=471

 Score = 524 bits (1352),  Expect = 9e-179, Method: Composition-based stats.
 Identities = 189/397 (48%), Positives = 263/397 (66%), Gaps = 14/397 (4%)

Query  273  IFLEDQ---GRWRRYAEKELYPLLHYKQHGPTDGRSERKWWGDYVRMNRLFADRIIEEYQ  329
            +FL D+     +  ++   L+PL HY      +   +R WW  YV++N+LFAD+I+E Y+
Sbjct  79   VFLSDELFDSYYNGFSNSILWPLFHYMIPPNNEDAFDRSWWDAYVKVNKLFADKIVEVYK  138

Query  330  EGDIVWIHDYHLFLLPSLLRQRIPNIYIGFFLHAPFPSSEFMRCLAKRKEVLTGVLGANM  389
            +GD++WIHDYHL LLP +LR+R+P+  IGFFLH PFPSSE  RCL  R+E+L G+LGA++
Sbjct  139  DGDLIWIHDYHLMLLPQMLRKRLPDAKIGFFLHTPFPSSEIFRCLPVREEILEGLLGADL  198

Query  390  IGFQTFSYSRHFSSCCTRVLGFD-SNNAGVDAYGAHVAVDVFPIGIDVKAIQKAAYGYPE  448
            IGF T+ Y+RHF SCC+R+LG +  ++ GV+  G  V+V  FPIGID   I+      P 
Sbjct  199  IGFHTYDYARHFLSCCSRLLGLETRSDGGVEYGGRTVSVKAFPIGIDPGRIESGL-ASPS  257

Query  449  IEEAVVGLRTLYAGK-KIIVGRDRLDSVRGVAQKLQAFEQFLERYPEWREKVVLIQVTSP  507
            ++E +  L+  +  K K+IVG DRLD ++G+ QKL AFE+FLE YPEWR KVVL+Q+  P
Sbjct  258  VQEKIKELKERFGNKKKLIVGVDRLDYIKGIPQKLLAFERFLEEYPEWRGKVVLVQIAVP  317

Query  508  TSVEEEKEDPE--NKIASQISNLVSTINGRFGSISFSPVKYYPQYLSQHEYFALLRVADV  565
            +       D E    + SQI  LV  ING FG++ ++PV +  + L   E  AL  VADV
Sbjct  318  SR-----GDVEEYQNLRSQIEELVGRINGEFGTLDYTPVHFLHRPLDFDELIALYAVADV  372

Query  566  GLITTVRDGMNTTSLEYILCQHNTHGPLILSEFSGTAGTLSS-AIHINPWDTTGVAEAIN  624
             L+T++RDGMN  + EY+ CQ    G LILSEF+G A +L+  AI +NPWD   VAEAIN
Sbjct  373  CLVTSLRDGMNLVAYEYVACQQGRKGVLILSEFAGAAQSLNDGAILVNPWDIDEVAEAIN  432

Query  625  RALTMSPEEKKAQHVKLYKHVTTNTISTWSNHFVTRL  661
             ALTMS EE+K +H KLYK+++ +    W+  F++ L
Sbjct  433  EALTMSEEERKKRHKKLYKYISKHDSQHWAESFLSDL  469


>CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase.  This family 
consist of trehalose-phosphatases EC:3.1.3.12 these enzyme 
catalyze the de-phosphorylation of trehalose-6-phosphate to 
trehalose and orthophosphate. The aligned region is present 
in trehalose-phosphatases and comprises the entire length 
of the protein it is also found in the C-terminus of trehalose-6-phosphate 
synthase EC:2.4.1.15 adjacent to the trehalose-6-phosphate 
synthase domain - pfam00982. It would appear that 
the two equivalent genes in the E. coli otsBA operon otsA 
the trehalose-6-phosphate synthase and otsB trehalose-phosphatase 
(this family) have undergone gene fusion in most eukaryotes. 
Trehalose is a common disaccharide of bacteria, fungi 
and invertebrates that appears to play a major role in desiccation 
tolerance.
Length=234

 Score = 293 bits (751),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 112/238 (47%), Positives = 153/238 (64%), Gaps = 6/238 (3%)

Query  695  MFDYDGTLTPIVKDPQAAIPSDRVLRTLKTLAADPRNAVWIISGRDQAFLDEWMGHIPEL  754
              DYDGTL+PIV DP AA+PSDR+L  L+ LA+DP N V IISGR +   D     +P L
Sbjct  1    FLDYDGTLSPIVSDPIAAVPSDRMLSALQDLASDPPNTVAIISGRSRQEED-LFVGVPNL  59

Query  755  GLSAEHGCFIRQPRSDDWENLAESSDMGWQKEVMEVFQHFTERTQGSFIERKRVALTWHY  814
            GL+AEHG F+R P   DW N AE  D+ W+KEV  + +++TERT GS++E K+ AL+WHY
Sbjct  60   GLAAEHGAFVRLPGGGDWYNQAEVEDLPWKKEVAPILEYYTERTPGSYVENKKSALSWHY  119

Query  815  RRADPEYGAFQARECRKMLEETVAKRWEVEVMAGKANLEVRPTFVNKGFIAARLVQEYGT  874
            R AD ++G+FQA+E  + LE  +     + V  GK  +EVRP  V+KG     +++E G+
Sbjct  120  RNADDDFGSFQAKELAEHLESVLQDNPPLRVTQGKKVVEVRPVGVSKGKAVEFILEELGS  179

Query  875  DPAQAPEFVLCLGDDFTDEDMFRALKKSGLPAGH--VFSVTVGASSKQTEASWHLLEP  930
                 P+F LC+GDD TDEDMF  L+ +        VF+V+VG  SK + AS+ L +P
Sbjct  180  AG-SLPDFPLCIGDDRTDEDMFSVLRPTKPSGVGIEVFAVSVG--SKPSSASYFLDDP  234



Lambda      K        H        a         alpha
   0.317    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1207742228


Query= TCONS_00021484

Length=909
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family...  523     7e-179
CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase. Thi...  271     1e-85 


>CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family 20.  Members 
of this family belong to glycosyl transferase family 
20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions 
in the subunits of yeast trehalose-6-phosphate synthase/phosphate 
complex,.
Length=471

 Score = 523 bits (1349),  Expect = 7e-179, Method: Composition-based stats.
 Identities = 189/397 (48%), Positives = 263/397 (66%), Gaps = 14/397 (4%)

Query  273  IFLEDQ---GRWRRYAEKELYPLLHYKQHGPTDGRSERKWWGDYVRMNRLFADRIIEEYQ  329
            +FL D+     +  ++   L+PL HY      +   +R WW  YV++N+LFAD+I+E Y+
Sbjct  79   VFLSDELFDSYYNGFSNSILWPLFHYMIPPNNEDAFDRSWWDAYVKVNKLFADKIVEVYK  138

Query  330  EGDIVWIHDYHLFLLPSLLRQRIPNIYIGFFLHAPFPSSEFMRCLAKRKEVLTGVLGANM  389
            +GD++WIHDYHL LLP +LR+R+P+  IGFFLH PFPSSE  RCL  R+E+L G+LGA++
Sbjct  139  DGDLIWIHDYHLMLLPQMLRKRLPDAKIGFFLHTPFPSSEIFRCLPVREEILEGLLGADL  198

Query  390  IGFQTFSYSRHFSSCCTRVLGFD-SNNAGVDAYGAHVAVDVFPIGIDVKAIQKAAYGYPE  448
            IGF T+ Y+RHF SCC+R+LG +  ++ GV+  G  V+V  FPIGID   I+      P 
Sbjct  199  IGFHTYDYARHFLSCCSRLLGLETRSDGGVEYGGRTVSVKAFPIGIDPGRIESGL-ASPS  257

Query  449  IEEAVVGLRTLYAGK-KIIVGRDRLDSVRGVAQKLQAFEQFLERYPEWREKVVLIQVTSP  507
            ++E +  L+  +  K K+IVG DRLD ++G+ QKL AFE+FLE YPEWR KVVL+Q+  P
Sbjct  258  VQEKIKELKERFGNKKKLIVGVDRLDYIKGIPQKLLAFERFLEEYPEWRGKVVLVQIAVP  317

Query  508  TSVEEEKEDPE--NKIASQISNLVSTINGRFGSISFSPVKYYPQYLSQHEYFALLRVADV  565
            +       D E    + SQI  LV  ING FG++ ++PV +  + L   E  AL  VADV
Sbjct  318  SR-----GDVEEYQNLRSQIEELVGRINGEFGTLDYTPVHFLHRPLDFDELIALYAVADV  372

Query  566  GLITTVRDGMNTTSLEYILCQHNTHGPLILSEFSGTAGTLSS-AIHINPWDTTGVAEAIN  624
             L+T++RDGMN  + EY+ CQ    G LILSEF+G A +L+  AI +NPWD   VAEAIN
Sbjct  373  CLVTSLRDGMNLVAYEYVACQQGRKGVLILSEFAGAAQSLNDGAILVNPWDIDEVAEAIN  432

Query  625  RALTMSPEEKKAQHVKLYKHVTTNTISTWSNHFVTRL  661
             ALTMS EE+K +H KLYK+++ +    W+  F++ L
Sbjct  433  EALTMSEEERKKRHKKLYKYISKHDSQHWAESFLSDL  469


>CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase.  This family 
consist of trehalose-phosphatases EC:3.1.3.12 these enzyme 
catalyze the de-phosphorylation of trehalose-6-phosphate to 
trehalose and orthophosphate. The aligned region is present 
in trehalose-phosphatases and comprises the entire length 
of the protein it is also found in the C-terminus of trehalose-6-phosphate 
synthase EC:2.4.1.15 adjacent to the trehalose-6-phosphate 
synthase domain - pfam00982. It would appear that 
the two equivalent genes in the E. coli otsBA operon otsA 
the trehalose-6-phosphate synthase and otsB trehalose-phosphatase 
(this family) have undergone gene fusion in most eukaryotes. 
Trehalose is a common disaccharide of bacteria, fungi 
and invertebrates that appears to play a major role in desiccation 
tolerance.
Length=234

 Score = 271 bits (696),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 97/199 (49%), Positives = 131/199 (66%), Gaps = 2/199 (1%)

Query  695  MFDYDGTLTPIVKDPQAAIPSDRVLRTLKTLAADPRNAVWIISGRDQAFLDEWMGHIPEL  754
              DYDGTL+PIV DP AA+PSDR+L  L+ LA+DP N V IISGR +   D     +P L
Sbjct  1    FLDYDGTLSPIVSDPIAAVPSDRMLSALQDLASDPPNTVAIISGRSRQEED-LFVGVPNL  59

Query  755  GLSAEHGCFIRQPRSDDWENLAESSDMGWQKEVMEVFQHFTERTQGSFIERKRVALTWHY  814
            GL+AEHG F+R P   DW N AE  D+ W+KEV  + +++TERT GS++E K+ AL+WHY
Sbjct  60   GLAAEHGAFVRLPGGGDWYNQAEVEDLPWKKEVAPILEYYTERTPGSYVENKKSALSWHY  119

Query  815  RRADPEYGAFQARECRKMLEETVAKRWEVEVMAGKANLEVRPTFVNKGFIAARLVQEYGT  874
            R AD ++G+FQA+E  + LE  +     + V  GK  +EVRP  V+KG     +++E G+
Sbjct  120  RNADDDFGSFQAKELAEHLESVLQDNPPLRVTQGKKVVEVRPVGVSKGKAVEFILEELGS  179

Query  875  DPAQAPEFVLCLGDDFTDE  893
                 P+F LC+GDD TDE
Sbjct  180  AG-SLPDFPLCIGDDRTDE  197



Lambda      K        H        a         alpha
   0.318    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1168508396


Query= TCONS_00026584

Length=949
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family...  524     9e-179
CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase. Thi...  293     3e-93 


>CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family 20.  Members 
of this family belong to glycosyl transferase family 
20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions 
in the subunits of yeast trehalose-6-phosphate synthase/phosphate 
complex,.
Length=471

 Score = 524 bits (1352),  Expect = 9e-179, Method: Composition-based stats.
 Identities = 189/397 (48%), Positives = 263/397 (66%), Gaps = 14/397 (4%)

Query  273  IFLEDQ---GRWRRYAEKELYPLLHYKQHGPTDGRSERKWWGDYVRMNRLFADRIIEEYQ  329
            +FL D+     +  ++   L+PL HY      +   +R WW  YV++N+LFAD+I+E Y+
Sbjct  79   VFLSDELFDSYYNGFSNSILWPLFHYMIPPNNEDAFDRSWWDAYVKVNKLFADKIVEVYK  138

Query  330  EGDIVWIHDYHLFLLPSLLRQRIPNIYIGFFLHAPFPSSEFMRCLAKRKEVLTGVLGANM  389
            +GD++WIHDYHL LLP +LR+R+P+  IGFFLH PFPSSE  RCL  R+E+L G+LGA++
Sbjct  139  DGDLIWIHDYHLMLLPQMLRKRLPDAKIGFFLHTPFPSSEIFRCLPVREEILEGLLGADL  198

Query  390  IGFQTFSYSRHFSSCCTRVLGFD-SNNAGVDAYGAHVAVDVFPIGIDVKAIQKAAYGYPE  448
            IGF T+ Y+RHF SCC+R+LG +  ++ GV+  G  V+V  FPIGID   I+      P 
Sbjct  199  IGFHTYDYARHFLSCCSRLLGLETRSDGGVEYGGRTVSVKAFPIGIDPGRIESGL-ASPS  257

Query  449  IEEAVVGLRTLYAGK-KIIVGRDRLDSVRGVAQKLQAFEQFLERYPEWREKVVLIQVTSP  507
            ++E +  L+  +  K K+IVG DRLD ++G+ QKL AFE+FLE YPEWR KVVL+Q+  P
Sbjct  258  VQEKIKELKERFGNKKKLIVGVDRLDYIKGIPQKLLAFERFLEEYPEWRGKVVLVQIAVP  317

Query  508  TSVEEEKEDPE--NKIASQISNLVSTINGRFGSISFSPVKYYPQYLSQHEYFALLRVADV  565
            +       D E    + SQI  LV  ING FG++ ++PV +  + L   E  AL  VADV
Sbjct  318  SR-----GDVEEYQNLRSQIEELVGRINGEFGTLDYTPVHFLHRPLDFDELIALYAVADV  372

Query  566  GLITTVRDGMNTTSLEYILCQHNTHGPLILSEFSGTAGTLSS-AIHINPWDTTGVAEAIN  624
             L+T++RDGMN  + EY+ CQ    G LILSEF+G A +L+  AI +NPWD   VAEAIN
Sbjct  373  CLVTSLRDGMNLVAYEYVACQQGRKGVLILSEFAGAAQSLNDGAILVNPWDIDEVAEAIN  432

Query  625  RALTMSPEEKKAQHVKLYKHVTTNTISTWSNHFVTRL  661
             ALTMS EE+K +H KLYK+++ +    W+  F++ L
Sbjct  433  EALTMSEEERKKRHKKLYKYISKHDSQHWAESFLSDL  469


>CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase.  This family 
consist of trehalose-phosphatases EC:3.1.3.12 these enzyme 
catalyze the de-phosphorylation of trehalose-6-phosphate to 
trehalose and orthophosphate. The aligned region is present 
in trehalose-phosphatases and comprises the entire length 
of the protein it is also found in the C-terminus of trehalose-6-phosphate 
synthase EC:2.4.1.15 adjacent to the trehalose-6-phosphate 
synthase domain - pfam00982. It would appear that 
the two equivalent genes in the E. coli otsBA operon otsA 
the trehalose-6-phosphate synthase and otsB trehalose-phosphatase 
(this family) have undergone gene fusion in most eukaryotes. 
Trehalose is a common disaccharide of bacteria, fungi 
and invertebrates that appears to play a major role in desiccation 
tolerance.
Length=234

 Score = 293 bits (751),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 112/238 (47%), Positives = 153/238 (64%), Gaps = 6/238 (3%)

Query  695  MFDYDGTLTPIVKDPQAAIPSDRVLRTLKTLAADPRNAVWIISGRDQAFLDEWMGHIPEL  754
              DYDGTL+PIV DP AA+PSDR+L  L+ LA+DP N V IISGR +   D     +P L
Sbjct  1    FLDYDGTLSPIVSDPIAAVPSDRMLSALQDLASDPPNTVAIISGRSRQEED-LFVGVPNL  59

Query  755  GLSAEHGCFIRQPRSDDWENLAESSDMGWQKEVMEVFQHFTERTQGSFIERKRVALTWHY  814
            GL+AEHG F+R P   DW N AE  D+ W+KEV  + +++TERT GS++E K+ AL+WHY
Sbjct  60   GLAAEHGAFVRLPGGGDWYNQAEVEDLPWKKEVAPILEYYTERTPGSYVENKKSALSWHY  119

Query  815  RRADPEYGAFQARECRKMLEETVAKRWEVEVMAGKANLEVRPTFVNKGFIAARLVQEYGT  874
            R AD ++G+FQA+E  + LE  +     + V  GK  +EVRP  V+KG     +++E G+
Sbjct  120  RNADDDFGSFQAKELAEHLESVLQDNPPLRVTQGKKVVEVRPVGVSKGKAVEFILEELGS  179

Query  875  DPAQAPEFVLCLGDDFTDEDMFRALKKSGLPAGH--VFSVTVGASSKQTEASWHLLEP  930
                 P+F LC+GDD TDEDMF  L+ +        VF+V+VG  SK + AS+ L +P
Sbjct  180  AG-SLPDFPLCIGDDRTDEDMFSVLRPTKPSGVGIEVFAVSVG--SKPSSASYFLDDP  234



Lambda      K        H        a         alpha
   0.317    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1207742228


Query= TCONS_00021483

Length=634
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family...  485     9e-168
CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase. Thi...  293     3e-96 


>CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family 20.  Members 
of this family belong to glycosyl transferase family 
20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions 
in the subunits of yeast trehalose-6-phosphate synthase/phosphate 
complex,.
Length=471

 Score = 485 bits (1251),  Expect = 9e-168, Method: Composition-based stats.
 Identities = 176/351 (50%), Positives = 241/351 (69%), Gaps = 11/351 (3%)

Query  1    MNRLFADRIIEEYQEGDIVWIHDYHLFLLPSLLRQRIPNIYIGFFLHAPFPSSEFMRCLA  60
            +N+LFAD+I+E Y++GD++WIHDYHL LLP +LR+R+P+  IGFFLH PFPSSE  RCL 
Sbjct  125  VNKLFADKIVEVYKDGDLIWIHDYHLMLLPQMLRKRLPDAKIGFFLHTPFPSSEIFRCLP  184

Query  61   KRKEVLTGVLGANMIGFQTFSYSRHFSSCCTRVLGFD-SNNAGVDAYGAHVAVDVFPIGI  119
             R+E+L G+LGA++IGF T+ Y+RHF SCC+R+LG +  ++ GV+  G  V+V  FPIGI
Sbjct  185  VREEILEGLLGADLIGFHTYDYARHFLSCCSRLLGLETRSDGGVEYGGRTVSVKAFPIGI  244

Query  120  DVKAIQKAAYGYPEIEEAVVGLRTLYAGK-KIIVGRDRLDSVRGVAQKLQAFEQFLERYP  178
            D   I+      P ++E +  L+  +  K K+IVG DRLD ++G+ QKL AFE+FLE YP
Sbjct  245  DPGRIESGL-ASPSVQEKIKELKERFGNKKKLIVGVDRLDYIKGIPQKLLAFERFLEEYP  303

Query  179  EWREKVVLIQVTSPTSVEEEKEDPE--NKIASQISNLVSTINGRFGSISFSPVKYYPQYL  236
            EWR KVVL+Q+  P+       D E    + SQI  LV  ING FG++ ++PV +  + L
Sbjct  304  EWRGKVVLVQIAVPSR-----GDVEEYQNLRSQIEELVGRINGEFGTLDYTPVHFLHRPL  358

Query  237  SQHEYFALLRVADVGLITTVRDGMNTTSLEYILCQHNTHGPLILSEFSGTAGTLSS-AIH  295
               E  AL  VADV L+T++RDGMN  + EY+ CQ    G LILSEF+G A +L+  AI 
Sbjct  359  DFDELIALYAVADVCLVTSLRDGMNLVAYEYVACQQGRKGVLILSEFAGAAQSLNDGAIL  418

Query  296  INPWDTTGVAEAINRALTMSPEEKKAQHVKLYKHVTTNTISTWSNHFVTRL  346
            +NPWD   VAEAIN ALTMS EE+K +H KLYK+++ +    W+  F++ L
Sbjct  419  VNPWDIDEVAEAINEALTMSEEERKKRHKKLYKYISKHDSQHWAESFLSDL  469


>CDD:426737 pfam02358, Trehalose_PPase, Trehalose-phosphatase.  This family 
consist of trehalose-phosphatases EC:3.1.3.12 these enzyme 
catalyze the de-phosphorylation of trehalose-6-phosphate to 
trehalose and orthophosphate. The aligned region is present 
in trehalose-phosphatases and comprises the entire length 
of the protein it is also found in the C-terminus of trehalose-6-phosphate 
synthase EC:2.4.1.15 adjacent to the trehalose-6-phosphate 
synthase domain - pfam00982. It would appear that 
the two equivalent genes in the E. coli otsBA operon otsA 
the trehalose-6-phosphate synthase and otsB trehalose-phosphatase 
(this family) have undergone gene fusion in most eukaryotes. 
Trehalose is a common disaccharide of bacteria, fungi 
and invertebrates that appears to play a major role in desiccation 
tolerance.
Length=234

 Score = 293 bits (751),  Expect = 3e-96, Method: Composition-based stats.
 Identities = 112/238 (47%), Positives = 153/238 (64%), Gaps = 6/238 (3%)

Query  380  MFDYDGTLTPIVKDPQAAIPSDRVLRTLKTLAADPRNAVWIISGRDQAFLDEWMGHIPEL  439
              DYDGTL+PIV DP AA+PSDR+L  L+ LA+DP N V IISGR +   D     +P L
Sbjct  1    FLDYDGTLSPIVSDPIAAVPSDRMLSALQDLASDPPNTVAIISGRSRQEED-LFVGVPNL  59

Query  440  GLSAEHGCFIRQPRSDDWENLAESSDMGWQKEVMEVFQHFTERTQGSFIERKRVALTWHY  499
            GL+AEHG F+R P   DW N AE  D+ W+KEV  + +++TERT GS++E K+ AL+WHY
Sbjct  60   GLAAEHGAFVRLPGGGDWYNQAEVEDLPWKKEVAPILEYYTERTPGSYVENKKSALSWHY  119

Query  500  RRADPEYGAFQARECRKMLEETVAKRWEVEVMAGKANLEVRPTFVNKGFIAARLVQEYGT  559
            R AD ++G+FQA+E  + LE  +     + V  GK  +EVRP  V+KG     +++E G+
Sbjct  120  RNADDDFGSFQAKELAEHLESVLQDNPPLRVTQGKKVVEVRPVGVSKGKAVEFILEELGS  179

Query  560  DPAQAPEFVLCLGDDFTDEDMFRALKKSGLPAGH--VFSVTVGASSKQTEASWHLLEP  615
                 P+F LC+GDD TDEDMF  L+ +        VF+V+VG  SK + AS+ L +P
Sbjct  180  AG-SLPDFPLCIGDDRTDEDMFSVLRPTKPSGVGIEVFAVSVG--SKPSSASYFLDDP  234



Lambda      K        H        a         alpha
   0.320    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 797861390


Query= TCONS_00026585

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            80.9    3e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 80.9 bits (200),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 130/349 (37%), Gaps = 15/349 (4%)

Query  101  VLLAHFVIFNTWGYINGFGVFQTYYTEHLGRPPSDISWVGSIQIFLLFFIGTLSGRATDA  160
            + LA F+       +           E LG  P++I  + ++          L+GR +D 
Sbjct  1    LFLAAFLAALGRSLLGPA--LPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDR  58

Query  161  GFFKVTLATGALLEVFCIFMTSLCTEYWQLFLTQGVGQGIGCGLMFCPTVALMATYFT-T  219
               +  L  G LL    + +    +  W L + + + QG+G G +F   +AL+A +F   
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL-QGLGAGALFPAALALIADWFPPE  117

Query  220  KRALAIGIVACGSATGGLVFPAVVVRLLPQVGYAWTMRVLGFITLATLLPPVVFLKQRLP  279
            +R  A+G+V+ G   G  + P +   L    G+     +L  ++L   +  ++       
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  280  PRKSG-------PLVEWAAFKELPYLFFAIGMFLNFWGLYVGFFYIGSFGRNIIGVSETT  332
             R           +V W A    P L+  + + L  +  +    Y+  +   ++G+S   
Sbjct  178  KRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQ-EVLGLSALL  236

Query  333  SVYILLVMNGIGILGRLMPNTMADWY--TGPLNMLIPFSLVTGLVSFCWAGVDEIHGLYA  390
            +  +L +   +G +GRL+   ++D       L + +   ++  L     +       L  
Sbjct  237  AGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLL  296

Query  391  WSAFYGLAAAGIQSLFPATLTSLTTDLKKAGVRMGMVLSVVAVAALIGS  439
                 G     +       L S     ++ G   G+  +  ++   +G 
Sbjct  297  ALLLLGFGFGLVFPAL-NALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00021487

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            81.3    2e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 81.3 bits (201),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 130/349 (37%), Gaps = 15/349 (4%)

Query  99   VLLAHFVIFNTWGYINGFGVFQTYYTEHLGRPPSDISWVGSIQIFLLFFIGTLSGRATDA  158
            + LA F+       +           E LG  P++I  + ++          L+GR +D 
Sbjct  1    LFLAAFLAALGRSLLGPA--LPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDR  58

Query  159  GFFKVTLATGALLEVFCIFMTSLCTEYWQLFLTQGVGQGIGCGLMFCPTVALMATYFT-T  217
               +  L  G LL    + +    +  W L + + + QG+G G +F   +AL+A +F   
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL-QGLGAGALFPAALALIADWFPPE  117

Query  218  KRALAIGIVACGSATGGLVFPAVVVRLLPQVGYAWTMRVLGFITLATLLPPVVFLKQRLP  277
            +R  A+G+V+ G   G  + P +   L    G+     +L  ++L   +  ++       
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  278  PRKSG-------PLVEWAAFKELPYLFFAIGMFLNFWGLYVGFFYIGSFGRNIIGVSETT  330
             R           +V W A    P L+  + + L  +  +    Y+  +   ++G+S   
Sbjct  178  KRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQ-EVLGLSALL  236

Query  331  SVYILLVMNGIGILGRLMPNTMADWY--TGPLNMLIPFSLVTGLVSFCWAGVDEIHGLYA  388
            +  +L +   +G +GRL+   ++D       L + +   ++  L     +       L  
Sbjct  237  AGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLL  296

Query  389  WSAFYGLAAAGIQSLFPATLTSLTTDLKKAGVRMGMVLSVVAVAALIGS  437
                 G     +       L S     ++ G   G+  +  ++   +G 
Sbjct  297  ALLLLGFGFGLVFPAL-NALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.141    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595027938


Query= TCONS_00021485

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            80.9    3e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 80.9 bits (200),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 130/349 (37%), Gaps = 15/349 (4%)

Query  101  VLLAHFVIFNTWGYINGFGVFQTYYTEHLGRPPSDISWVGSIQIFLLFFIGTLSGRATDA  160
            + LA F+       +           E LG  P++I  + ++          L+GR +D 
Sbjct  1    LFLAAFLAALGRSLLGPA--LPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDR  58

Query  161  GFFKVTLATGALLEVFCIFMTSLCTEYWQLFLTQGVGQGIGCGLMFCPTVALMATYFT-T  219
               +  L  G LL    + +    +  W L + + + QG+G G +F   +AL+A +F   
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL-QGLGAGALFPAALALIADWFPPE  117

Query  220  KRALAIGIVACGSATGGLVFPAVVVRLLPQVGYAWTMRVLGFITLATLLPPVVFLKQRLP  279
            +R  A+G+V+ G   G  + P +   L    G+     +L  ++L   +  ++       
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  280  PRKSG-------PLVEWAAFKELPYLFFAIGMFLNFWGLYVGFFYIGSFGRNIIGVSETT  332
             R           +V W A    P L+  + + L  +  +    Y+  +   ++G+S   
Sbjct  178  KRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQ-EVLGLSALL  236

Query  333  SVYILLVMNGIGILGRLMPNTMADWY--TGPLNMLIPFSLVTGLVSFCWAGVDEIHGLYA  390
            +  +L +   +G +GRL+   ++D       L + +   ++  L     +       L  
Sbjct  237  AGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLL  296

Query  391  WSAFYGLAAAGIQSLFPATLTSLTTDLKKAGVRMGMVLSVVAVAALIGS  439
                 G     +       L S     ++ G   G+  +  ++   +G 
Sbjct  297  ALLLLGFGFGLVFPAL-NALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00026586

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463025 pfam10252, PP28, Casein kinase substrate phosphoprotei...  110     9e-32


>CDD:463025 pfam10252, PP28, Casein kinase substrate phosphoprotein PP28. 
 This domain is a region of 70 residues conserved in proteins 
from plants to humans and contains a serine/arginine rich 
motif. In rats the full protein is a casein kinase substrate, 
and this region contains phosphorylation sites for both cAMP-dependent 
protein kinase and casein kinase II.
Length=80

 Score = 110 bits (277),  Expect = 9e-32, Method: Composition-based stats.
 Identities = 51/86 (59%), Positives = 62/86 (72%), Gaps = 6/86 (7%)

Query  137  NPNHTAKSRSQLHKDPAAAPEKAAGGDLSQLSRREREAIEAQQARERYMKLHAEGKTEEA  196
            NPN   K+++Q   D  AA +        +LSRRERE IE Q+A+ERYMKLHAEGKTEEA
Sbjct  1    NPNRVKKAKNQKLADLDAADKPK------ELSRREREEIEKQKAKERYMKLHAEGKTEEA  54

Query  197  RADLARLALIREQREADRLRKLAEKE  222
            +ADLARLALIR+QRE    ++ AEKE
Sbjct  55   KADLARLALIRKQREEAAAKREAEKE  80



Lambda      K        H        a         alpha
   0.304    0.124    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0772    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00021490

Length=1482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460178 pfam01369, Sec7, Sec7 domain. The Sec7 domain is a gua...  92.9    6e-22
CDD:434701 pfam15410, PH_9, Pleckstrin homology domain. This Plec...  83.6    2e-19


>CDD:460178 pfam01369, Sec7, Sec7 domain.  The Sec7 domain is a guanine-nucleotide-exchange-factor 
(GEF) for the pfam00025 family.
Length=183

 Score = 92.9 bits (232),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 38/103 (37%), Positives = 63/103 (61%), Gaps = 3/103 (3%)

Query  787  LGDPGRAS--IRAAYMELFDWSNMNILAALRSLCTRLVLKGETQQVDRVLDAFSTRWCQC  844
            LG P   +  +  A+++LFD+  + I  ALR       L GE Q++DR+++AF+ R+ + 
Sbjct  55   LGKPDEFNIEVLKAFVDLFDFKGLRIDEALRLFLESFRLPGEAQKIDRIMEAFAERYYEQ  114

Query  845  NPRHGFKAVDVVHTICYSLLLLNTDLHLADIEQKMTKNQFVRN  887
            NP   F   D  + + YS+++LNTDLH  ++++KMT   F+RN
Sbjct  115  NP-GVFANADAAYVLAYSIIMLNTDLHNPNVKKKMTLEDFIRN  156


>CDD:434701 pfam15410, PH_9, Pleckstrin homology domain.  This Pleckstrin 
homology domain is found in some fungal species.
Length=118

 Score = 83.6 bits (207),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 37/134 (28%), Positives = 63/134 (47%), Gaps = 18/134 (13%)

Query  1178  AKEGSLKHKQHLDSVDKRA--KDRNWNECFAVIQQGWMRLFSFSNAAKTPRQKPKQRPHG  1235
              K+G +  K   +S  K+     R+W   +AV++   + L+              + P  
Sbjct  1     YKKGIVMRKCCFESKGKKTPRGKRSWKMVYAVLKDLVLYLYKD------------EHPPE  48

Query  1236  GVVVGGGNWTENAQELWKFLLRHTIASALPPPGYSKSRPHVWALSLPTGAVHLFQAGTPE  1295
                       +NA  + K  L H +A+  P P Y+K + HV+ L    GA +LFQ G+P+
Sbjct  49    SSQFEDKKSLKNAP-VGKIRLHHALAT--PAPDYTK-KSHVFRLQTADGAEYLFQTGSPK  104

Query  1296  IVREFVSSANYWSA  1309
              ++E+V + NYW+A
Sbjct  105   ELQEWVDTLNYWAA  118



Lambda      K        H        a         alpha
   0.310    0.125    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1876678446


Query= TCONS_00021488

Length=1482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460178 pfam01369, Sec7, Sec7 domain. The Sec7 domain is a gua...  92.9    6e-22
CDD:434701 pfam15410, PH_9, Pleckstrin homology domain. This Plec...  83.6    2e-19


>CDD:460178 pfam01369, Sec7, Sec7 domain.  The Sec7 domain is a guanine-nucleotide-exchange-factor 
(GEF) for the pfam00025 family.
Length=183

 Score = 92.9 bits (232),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 38/103 (37%), Positives = 63/103 (61%), Gaps = 3/103 (3%)

Query  787  LGDPGRAS--IRAAYMELFDWSNMNILAALRSLCTRLVLKGETQQVDRVLDAFSTRWCQC  844
            LG P   +  +  A+++LFD+  + I  ALR       L GE Q++DR+++AF+ R+ + 
Sbjct  55   LGKPDEFNIEVLKAFVDLFDFKGLRIDEALRLFLESFRLPGEAQKIDRIMEAFAERYYEQ  114

Query  845  NPRHGFKAVDVVHTICYSLLLLNTDLHLADIEQKMTKNQFVRN  887
            NP   F   D  + + YS+++LNTDLH  ++++KMT   F+RN
Sbjct  115  NP-GVFANADAAYVLAYSIIMLNTDLHNPNVKKKMTLEDFIRN  156


>CDD:434701 pfam15410, PH_9, Pleckstrin homology domain.  This Pleckstrin 
homology domain is found in some fungal species.
Length=118

 Score = 83.6 bits (207),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 37/134 (28%), Positives = 63/134 (47%), Gaps = 18/134 (13%)

Query  1178  AKEGSLKHKQHLDSVDKRA--KDRNWNECFAVIQQGWMRLFSFSNAAKTPRQKPKQRPHG  1235
              K+G +  K   +S  K+     R+W   +AV++   + L+              + P  
Sbjct  1     YKKGIVMRKCCFESKGKKTPRGKRSWKMVYAVLKDLVLYLYKD------------EHPPE  48

Query  1236  GVVVGGGNWTENAQELWKFLLRHTIASALPPPGYSKSRPHVWALSLPTGAVHLFQAGTPE  1295
                       +NA  + K  L H +A+  P P Y+K + HV+ L    GA +LFQ G+P+
Sbjct  49    SSQFEDKKSLKNAP-VGKIRLHHALAT--PAPDYTK-KSHVFRLQTADGAEYLFQTGSPK  104

Query  1296  IVREFVSSANYWSA  1309
              ++E+V + NYW+A
Sbjct  105   ELQEWVDTLNYWAA  118



Lambda      K        H        a         alpha
   0.310    0.125    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1876678446


Query= TCONS_00026587

Length=1706
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462333 pfam07989, Cnn_1N, Centrosomin N-terminal motif 1. Thi...   99     9e-26
CDD:315477 pfam12808, Mto2_bdg, Micro-tubular organizer Mto1 C-te...  74.8    4e-17
CDD:464943 pfam15921, CCDC158, Coiled-coil domain-containing prot...  82.1    6e-16
CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. Thi...  73.5    3e-13


>CDD:462333 pfam07989, Cnn_1N, Centrosomin N-terminal motif 1.  This domain 
has been identified in two microtubule associated proteins 
in Schizosaccharomyces pombe, Mto1 and Pcp1. Mto1 has been 
identified in association with spindle pole body and non-spindle 
pole body microtubules. The pericentrin homolog Pcp1 is 
also associated with the fungal centrosome or spindle pole 
body (SPB). Members of this family have been named centrosomins, 
and are an essential mitotic centrosome component required 
for assembly of all other known pericentriolar matrix proteins 
in order to achieve microtubule-organising activity 
in fission yeast. Cnn_1N is a short conserved motif towards 
the N-terminus. Motif 1 is found to be necessary for proper 
recruitment of gamma-tubulin, D-TACC (the homolog of vertebrate 
transforming acidic coiled-coil proteins [TACC]), and Minispindles 
(Msps) to embryonic centrosomes but is not required 
for assembly of other centrosome components including Aurora 
A kinase and CP60 in Drosophila.
Length=69

 Score =  99 bits (250),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 0/69 (0%)

Query  624  KEQSSTIDRLSKENFDLKMRIHFLNEALNRRSEEGIKEMISENVELKSDKLKLQKDNQNL  683
            +EQ   ID+L KENF+LK++IHFL E L + + E I+E + EN+ELK +   LQ++ + L
Sbjct  1    REQEKQIDKLKKENFNLKLKIHFLEERLEKLAPEQIEEALKENIELKVELETLQRELKKL  60

Query  684  KRKIRDLEK  692
            K+ +R+ EK
Sbjct  61   KKLLREAEK  69


>CDD:315477 pfam12808, Mto2_bdg, Micro-tubular organizer Mto1 C-term Mto2-binding 
region.  The C-terminal region of the micro-tubular 
organizer protein 1 (mto1) is the binding domain for attachment 
to Mto2p.The full-length Mto1 protein is required for microtubule 
nucleation from non-spindle pole body MTOCs in fission 
yeast. The interaction of Mto2p with this region of Mto1 
is critical for anchoring the cytokinetic actin ring to the 
medial region of the cell and for proper coordination of 
mitosis with cytokinesis.
Length=52

 Score = 74.8 bits (184),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 34/52 (65%), Positives = 43/52 (83%), Gaps = 0/52 (0%)

Query  1602  RWIHRLRELEKRLKAEREARLLDRSGARKRLEERDAENQRLRAQLERQRMRR  1653
             +W+HRLRELE++LKAEREARLLDRSGAR+RLEE + EN+ L+A+L   R   
Sbjct  1     KWLHRLRELERQLKAEREARLLDRSGARERLEELNGENRLLKAELNLLRSHS  52


>CDD:464943 pfam15921, CCDC158, Coiled-coil domain-containing protein 158. 
 CCDC158 is a family of proteins found in eukaryotes. The 
function is not known.
Length=1112

 Score = 82.1 bits (202),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 157/743 (21%), Positives = 322/743 (43%), Gaps = 114/743 (15%)

Query  677   QKDNQNLKRKIRDLEKQLKDQQSDKESMANHDPEGSDEDSRDAAQDEEILFMRERQEAYE  736
             +K    L++ + DL+ +L++ Q ++++MA        +  R  +Q +E L  + +   +E
Sbjct  102   EKQKFYLRQSVIDLQTKLQEMQMERDAMA--------DIRRRESQSQEDLRNQLQNTVHE  153

Query  737   LEIERLRSESIVRES----EKRR---------LAEMVKALSDRPVGSEAGAREERDM---  780
             LE  +   E ++ +S    E+ R         L E+   L D    S     E   M   
Sbjct  154   LEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTM  213

Query  781   -WKDMLDAETAAREQAEEENKRIK-------DEIQALRNELNYVIALPRAGQRDRVGSMI  832
              ++ +  A +    + + E   +K       D+++AL++E    I L     +DR+  +I
Sbjct  214   HFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLI  273

Query  833   SYTTASDRDMTRMPTLTSSSSDTLVEEIRLL----RQENAELRREVS---AQTSMLTSRN  885
             S        +T   +   S ++++  ++ ++    R +N+   R++S   +  S L S  
Sbjct  274   SEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSEL  333

Query  886   KEKERLYQE-IEELKLGQRRDGVRSVAGDSIFDRSASRAQ-GRSSSRASDGTGPSRSDDA  943
             +E +R+Y++ IEEL      +    +A   + +    R Q  + S    D      +D  
Sbjct  334   REAKRMYEDKIEEL------EKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLH  387

Query  944   ERE---DLEQRIDQ-LRDQVSALKLENQTIRAELEER---IAEYDALDKQYQADVDGADE  996
             +RE    LE+  ++ L D+ +   +    +R EL++R   +   +AL K  +++  G  E
Sbjct  388   KREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQME  447

Query  997   MFNALHQERDEAERKMNDCLVNMQIMDAQYTEDIENLEEEVRRKTEECERLEEELRNQDE  1056
                A  Q ++E+  K++     ++       E +  + EE+  K    E  E  + +   
Sbjct  448   RQMAAIQGKNESLEKVSSLTAQLE----STKEMLRKVVEELTAKKMTLESSERTVSDLTA  503

Query  1057  NLRALQAEMRSASEGIIRLEEDAQTNLQRYEKVQRE---LQDCNREMEALEKSLYEANTK  1113
             +L+  +  + + +  I +L       LQ  + ++ E   L++   E EAL+  + E +  
Sbjct  504   SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKV  563

Query  1114  VQRLTVQIESSQNEIAFLREEQDGDKIRIGDLESELKTCQMSLQS------ERD-KVKEL  1166
             ++ L  QIE+    +          ++    LE E+   ++ LQ       ++D K++EL
Sbjct  564   IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIREL  623

Query  1167  ESRLAE---ERHQREVVGTKE-------KQEVQRIINELN---REASSAREEARRLKKSL  1213
             E+R+++   E+ +    G++        KQE  +++NE+     E +S  E+   LK++ 
Sbjct  624   EARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF  683

Query  1214  --SAQEIETATWRERLM------DLENNLRETLGDLTGSRSSLISNIMKLQKELESTALE  1265
                ++E+ET T + ++       +LE   R TL  + GS    +   M +QK++ +   +
Sbjct  684   RNKSEEMETTTNKLKMQLKSAQSELEQT-RNTLKSMEGSDGHAMKVAMGMQKQITAKRGQ  742

Query  1266  LESVRSKLDEKETLLRNRDALLESHGLESRKLSELLERERQARRADKQSFEQALKSHHQA  1325
             +++++SK+   E  + N +                  +E+   + +K    Q L      
Sbjct  743   IDALQSKIQFLEEAMTNAN------------------KEKHFLKEEKNKLSQEL------  778

Query  1326  SRTITQNNSRITELENARSQDRK  1348
             S   T+ N    ELE  RSQ+R+
Sbjct  779   STVATEKNKMAGELEVLRSQERR  801


>CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain 
is found at the N-terminus of SMC proteins. The SMC (structural 
maintenance of chromosomes) superfamily proteins have 
ATP-binding domains at the N- and C-termini, and two extended 
coiled-coil domains separated by a hinge in the middle. The 
eukaryotic SMC proteins form two kind of heterodimers: the 
SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute 
an essential part of higher order complexes, which are 
involved in chromatin and DNA dynamics. This family also includes 
the RecF and RecN proteins that are involved in DNA 
metabolism and recombination.
Length=1161

 Score = 73.5 bits (180),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 109/761 (14%), Positives = 218/761 (29%), Gaps = 49/761 (6%)

Query  623   LKEQSSTIDRLSKENFDLKMRIHFLNEALNRRSEEGIKEMISENVELKSDKLKLQKDNQN  682
               ++     +L +E   L  +     ++   + E    +   +  E + +K K +K+ + 
Sbjct  273   ENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK  332

Query  683   LKRKIRDLEKQLKDQQSDKESMANHDPEGSDEDSRDAAQDEEILFMRERQEAYEL---EI  739
              K +I +LEK+LK+ +  +E                 A++EE   + + QE  E    E+
Sbjct  333   EKEEIEELEKELKELEIKRE-----------------AEEEEEEELEKLQEKLEQLEEEL  375

Query  740   ERLRSESIVRESEKRRLAEMVKALSDRPVGSEAGAREERDMWKDMLDAE--TAAREQAEE  797
                +     R S   +L E    L            E     +D+L  E         EE
Sbjct  376   LAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEE  435

Query  798   ENKRIKDEIQALRNELNYVIALPRAGQRDRVGSMISYTTASDRDMTRMPTLTSSSSDTLV  857
             E      + +    +        +  + +             + +     L    S   +
Sbjct  436   EESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKL  495

Query  858   EEIRLLRQENAE----LRREVSAQTSMLTSRNKEKERLYQEIEELKLGQR---RDGVRSV  910
             EE      +       L   +             +        E              S 
Sbjct  496   EERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA  555

Query  911   AGDSIFDRSASRAQGRSSSRASDGTGPSRSDDA--EREDLEQRIDQLRDQVSALKLENQT  968
               D + +R             +              +      ID + +     K   + 
Sbjct  556   TADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA  615

Query  969   IRAELEERIAEYDALDKQYQADVDGADEMFNALHQERDEAERKMNDCLVNMQIMDAQYTE  1028
                +   ++ E    D +     + A    + L +     E       V   + +     
Sbjct  616   DEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKEL  675

Query  1029  DIENLEEEVRRKTEECERLEEELRNQDENLRALQAEMRSASEGIIRLEEDAQTNLQRYEK  1088
                   +E        E +        +  +  + E++        L  D     Q    
Sbjct  676   LEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN  735

Query  1089  VQRELQDC--NREMEALEKSLYEANTKVQRLTVQIESSQNEIAFLREEQDGDKIRIGDLE  1146
              + +L     + E E  EKS  +   K +       S + +      E+        + E
Sbjct  736   EELKLLKQKIDEEEEEEEKSRLKKEEKEEEK--SELSLKEKELAEEREKTEKLKVEEEKE  793

Query  1147  SELKTCQMSLQSERDKVKELESRLAEERHQREVVGTKEKQEVQRIINELNREASSAREEA  1206
              +LK  +  L++  +++KE    L EE           +QE +    EL   A   +EE 
Sbjct  794   EKLKAQEEELRALEEELKEEAELLEEE-------QLLIEQEEKIKEEELEELALELKEEQ  846

Query  1207  RRLKKSLSAQEIETATWRERLMDLENNLRETLGDLTGSRSSLISNIMKLQKELESTALEL  1266
             +  K +    E       +  +  E  L+E   +    +  L S   K ++E +    E 
Sbjct  847   KLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKE-LEEE  905

Query  1267  ESVRSKLDEKETLLRNRDALLESHGLESRKLSELLERERQARRADKQSFEQALKSHHQAS  1326
                 + L+EKE  +  R            K  E  E        +K+  E   +   +  
Sbjct  906   SQKLNLLEEKENEIEERIKEEA---EILLKYEEEPEELLLEEADEKEKEENNKE---EEE  959

Query  1327  RTITQNNSRITELENARSQDRKRFTALEQQFKEQLNERNSM  1367
                 +      EL        + F   E+++ +   E+  +
Sbjct  960   ERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERL  1000



Lambda      K        H        a         alpha
   0.309    0.125    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2147742344


Query= TCONS_00021489

Length=886
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460178 pfam01369, Sec7, Sec7 domain. The Sec7 domain is a gua...  79.4    2e-17


>CDD:460178 pfam01369, Sec7, Sec7 domain.  The Sec7 domain is a guanine-nucleotide-exchange-factor 
(GEF) for the pfam00025 family.
Length=183

 Score = 79.4 bits (197),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 37/64 (58%), Gaps = 2/64 (3%)

Query  787  LGDPGRAS--IRAAYMELFDWSNMNILAALRSLCTRLVLKGETQQVDRVLDAFSTRWCQC  844
            LG P   +  +  A+++LFD+  + I  ALR       L GE Q++DR+++AF+ R+ + 
Sbjct  55   LGKPDEFNIEVLKAFVDLFDFKGLRIDEALRLFLESFRLPGEAQKIDRIMEAFAERYYEQ  114

Query  845  NPRH  848
            NP  
Sbjct  115  NPGV  118



Lambda      K        H        a         alpha
   0.309    0.125    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1135491574


Query= TCONS_00026588

Length=1637
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462333 pfam07989, Cnn_1N, Centrosomin N-terminal motif 1. Thi...  99.1    2e-25
CDD:315477 pfam12808, Mto2_bdg, Micro-tubular organizer Mto1 C-te...  73.7    1e-16
CDD:464943 pfam15921, CCDC158, Coiled-coil domain-containing prot...  79.4    3e-15
CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. Thi...  71.2    1e-12


>CDD:462333 pfam07989, Cnn_1N, Centrosomin N-terminal motif 1.  This domain 
has been identified in two microtubule associated proteins 
in Schizosaccharomyces pombe, Mto1 and Pcp1. Mto1 has been 
identified in association with spindle pole body and non-spindle 
pole body microtubules. The pericentrin homolog Pcp1 is 
also associated with the fungal centrosome or spindle pole 
body (SPB). Members of this family have been named centrosomins, 
and are an essential mitotic centrosome component required 
for assembly of all other known pericentriolar matrix proteins 
in order to achieve microtubule-organising activity 
in fission yeast. Cnn_1N is a short conserved motif towards 
the N-terminus. Motif 1 is found to be necessary for proper 
recruitment of gamma-tubulin, D-TACC (the homolog of vertebrate 
transforming acidic coiled-coil proteins [TACC]), and Minispindles 
(Msps) to embryonic centrosomes but is not required 
for assembly of other centrosome components including Aurora 
A kinase and CP60 in Drosophila.
Length=69

 Score = 99.1 bits (248),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 0/69 (0%)

Query  555  KEQSSTIDRLSKENFDLKMRIHFLNEALNRRSEEGIKEMISENVELKSDKLKLQKDNQNL  614
            +EQ   ID+L KENF+LK++IHFL E L + + E I+E + EN+ELK +   LQ++ + L
Sbjct  1    REQEKQIDKLKKENFNLKLKIHFLEERLEKLAPEQIEEALKENIELKVELETLQRELKKL  60

Query  615  KRKIRDLEK  623
            K+ +R+ EK
Sbjct  61   KKLLREAEK  69


>CDD:315477 pfam12808, Mto2_bdg, Micro-tubular organizer Mto1 C-term Mto2-binding 
region.  The C-terminal region of the micro-tubular 
organizer protein 1 (mto1) is the binding domain for attachment 
to Mto2p.The full-length Mto1 protein is required for microtubule 
nucleation from non-spindle pole body MTOCs in fission 
yeast. The interaction of Mto2p with this region of Mto1 
is critical for anchoring the cytokinetic actin ring to the 
medial region of the cell and for proper coordination of 
mitosis with cytokinesis.
Length=52

 Score = 73.7 bits (181),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 34/52 (65%), Positives = 43/52 (83%), Gaps = 0/52 (0%)

Query  1533  RWIHRLRELEKRLKAEREARLLDRSGARKRLEERDAENQRLRAQLERQRMRR  1584
             +W+HRLRELE++LKAEREARLLDRSGAR+RLEE + EN+ L+A+L   R   
Sbjct  1     KWLHRLRELERQLKAEREARLLDRSGARERLEELNGENRLLKAELNLLRSHS  52


>CDD:464943 pfam15921, CCDC158, Coiled-coil domain-containing protein 158. 
 CCDC158 is a family of proteins found in eukaryotes. The 
function is not known.
Length=1112

 Score = 79.4 bits (195),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 157/743 (21%), Positives = 322/743 (43%), Gaps = 114/743 (15%)

Query  608   QKDNQNLKRKIRDLEKQLKDQQSDKESMANHDPEGSDEDSRDAAQDEEILFMRERQEAYE  667
             +K    L++ + DL+ +L++ Q ++++MA        +  R  +Q +E L  + +   +E
Sbjct  102   EKQKFYLRQSVIDLQTKLQEMQMERDAMA--------DIRRRESQSQEDLRNQLQNTVHE  153

Query  668   LEIERLRSESIVRES----EKRR---------LAEMVKALSDRPVGSEAGAREERDM---  711
             LE  +   E ++ +S    E+ R         L E+   L D    S     E   M   
Sbjct  154   LEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTM  213

Query  712   -WKDMLDAETAAREQAEEENKRIK-------DEIQALRNELNYVIALPRAGQRDRVGSMI  763
              ++ +  A +    + + E   +K       D+++AL++E    I L     +DR+  +I
Sbjct  214   HFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLI  273

Query  764   SYTTASDRDMTRMPTLTSSSSDTLVEEIRLL----RQENAELRREVS---AQTSMLTSRN  816
             S        +T   +   S ++++  ++ ++    R +N+   R++S   +  S L S  
Sbjct  274   SEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSEL  333

Query  817   KEKERLYQE-IEELKLGQRRDGVRSVAGDSIFDRSASRAQ-GRSSSRASDGTGPSRSDDA  874
             +E +R+Y++ IEEL      +    +A   + +    R Q  + S    D      +D  
Sbjct  334   REAKRMYEDKIEEL------EKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLH  387

Query  875   ERE---DLEQRIDQ-LRDQVSALKLENQTIRAELEER---IAEYDALDKQYQADVDGADE  927
             +RE    LE+  ++ L D+ +   +    +R EL++R   +   +AL K  +++  G  E
Sbjct  388   KREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQME  447

Query  928   MFNALHQERDEAERKMNDCLVNMQIMDAQYTEDIENLEEEVRRKTEECERLEEELRNQDE  987
                A  Q ++E+  K++     ++       E +  + EE+  K    E  E  + +   
Sbjct  448   RQMAAIQGKNESLEKVSSLTAQLE----STKEMLRKVVEELTAKKMTLESSERTVSDLTA  503

Query  988   NLRALQAEMRSASEGIIRLEEDAQTNLQRYEKVQRE---LQDCNREMEALEKSLYEANTK  1044
             +L+  +  + + +  I +L       LQ  + ++ E   L++   E EAL+  + E +  
Sbjct  504   SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKV  563

Query  1045  VQRLTVQIESSQNEIAFLREEQDGDKIRIGDLESELKTCQMSLQS------ERD-KVKEL  1097
             ++ L  QIE+    +          ++    LE E+   ++ LQ       ++D K++EL
Sbjct  564   IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIREL  623

Query  1098  ESRLAE---ERHQREVVGTKE-------KQEVQRIINELN---REASSAREEARRLKKSL  1144
             E+R+++   E+ +    G++        KQE  +++NE+     E +S  E+   LK++ 
Sbjct  624   EARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF  683

Query  1145  --SAQEIETATWRERLM------DLENNLRETLGDLTGSRSSLISNIMKLQKELESTALE  1196
                ++E+ET T + ++       +LE   R TL  + GS    +   M +QK++ +   +
Sbjct  684   RNKSEEMETTTNKLKMQLKSAQSELEQT-RNTLKSMEGSDGHAMKVAMGMQKQITAKRGQ  742

Query  1197  LESVRSKLDEKETLLRNRDALLESHGLESRKLSELLERERQARRADKQSFEQALKSHHQA  1256
             +++++SK+   E  + N +                  +E+   + +K    Q L      
Sbjct  743   IDALQSKIQFLEEAMTNAN------------------KEKHFLKEEKNKLSQEL------  778

Query  1257  SRTITQNNSRITELENARSQDRK  1279
             S   T+ N    ELE  RSQ+R+
Sbjct  779   STVATEKNKMAGELEVLRSQERR  801


>CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain 
is found at the N-terminus of SMC proteins. The SMC (structural 
maintenance of chromosomes) superfamily proteins have 
ATP-binding domains at the N- and C-termini, and two extended 
coiled-coil domains separated by a hinge in the middle. The 
eukaryotic SMC proteins form two kind of heterodimers: the 
SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute 
an essential part of higher order complexes, which are 
involved in chromatin and DNA dynamics. This family also includes 
the RecF and RecN proteins that are involved in DNA 
metabolism and recombination.
Length=1161

 Score = 71.2 bits (174),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 109/761 (14%), Positives = 218/761 (29%), Gaps = 49/761 (6%)

Query  554   LKEQSSTIDRLSKENFDLKMRIHFLNEALNRRSEEGIKEMISENVELKSDKLKLQKDNQN  613
               ++     +L +E   L  +     ++   + E    +   +  E + +K K +K+ + 
Sbjct  273   ENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK  332

Query  614   LKRKIRDLEKQLKDQQSDKESMANHDPEGSDEDSRDAAQDEEILFMRERQEAYEL---EI  670
              K +I +LEK+LK+ +  +E                 A++EE   + + QE  E    E+
Sbjct  333   EKEEIEELEKELKELEIKRE-----------------AEEEEEEELEKLQEKLEQLEEEL  375

Query  671   ERLRSESIVRESEKRRLAEMVKALSDRPVGSEAGAREERDMWKDMLDAE--TAAREQAEE  728
                +     R S   +L E    L            E     +D+L  E         EE
Sbjct  376   LAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEE  435

Query  729   ENKRIKDEIQALRNELNYVIALPRAGQRDRVGSMISYTTASDRDMTRMPTLTSSSSDTLV  788
             E      + +    +        +  + +             + +     L    S   +
Sbjct  436   EESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKL  495

Query  789   EEIRLLRQENAE----LRREVSAQTSMLTSRNKEKERLYQEIEELKLGQR---RDGVRSV  841
             EE      +       L   +             +        E              S 
Sbjct  496   EERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA  555

Query  842   AGDSIFDRSASRAQGRSSSRASDGTGPSRSDDA--EREDLEQRIDQLRDQVSALKLENQT  899
               D + +R             +              +      ID + +     K   + 
Sbjct  556   TADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA  615

Query  900   IRAELEERIAEYDALDKQYQADVDGADEMFNALHQERDEAERKMNDCLVNMQIMDAQYTE  959
                +   ++ E    D +     + A    + L +     E       V   + +     
Sbjct  616   DEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKEL  675

Query  960   DIENLEEEVRRKTEECERLEEELRNQDENLRALQAEMRSASEGIIRLEEDAQTNLQRYEK  1019
                   +E        E +        +  +  + E++        L  D     Q    
Sbjct  676   LEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN  735

Query  1020  VQRELQDC--NREMEALEKSLYEANTKVQRLTVQIESSQNEIAFLREEQDGDKIRIGDLE  1077
              + +L     + E E  EKS  +   K +       S + +      E+        + E
Sbjct  736   EELKLLKQKIDEEEEEEEKSRLKKEEKEEEK--SELSLKEKELAEEREKTEKLKVEEEKE  793

Query  1078  SELKTCQMSLQSERDKVKELESRLAEERHQREVVGTKEKQEVQRIINELNREASSAREEA  1137
              +LK  +  L++  +++KE    L EE           +QE +    EL   A   +EE 
Sbjct  794   EKLKAQEEELRALEEELKEEAELLEEE-------QLLIEQEEKIKEEELEELALELKEEQ  846

Query  1138  RRLKKSLSAQEIETATWRERLMDLENNLRETLGDLTGSRSSLISNIMKLQKELESTALEL  1197
             +  K +    E       +  +  E  L+E   +    +  L S   K ++E +    E 
Sbjct  847   KLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKE-LEEE  905

Query  1198  ESVRSKLDEKETLLRNRDALLESHGLESRKLSELLERERQARRADKQSFEQALKSHHQAS  1257
                 + L+EKE  +  R            K  E  E        +K+  E   +   +  
Sbjct  906   SQKLNLLEEKENEIEERIKEEA---EILLKYEEEPEELLLEEADEKEKEENNKE---EEE  959

Query  1258  RTITQNNSRITELENARSQDRKRFTALEQQFKEQLNERNSM  1298
                 +      EL        + F   E+++ +   E+  +
Sbjct  960   ERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERL  1000



Lambda      K        H        a         alpha
   0.308    0.124    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2087007556


Query= TCONS_00026589

Length=1706
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462333 pfam07989, Cnn_1N, Centrosomin N-terminal motif 1. Thi...   99     9e-26
CDD:315477 pfam12808, Mto2_bdg, Micro-tubular organizer Mto1 C-te...  74.8    4e-17
CDD:464943 pfam15921, CCDC158, Coiled-coil domain-containing prot...  82.1    6e-16
CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. Thi...  73.5    3e-13


>CDD:462333 pfam07989, Cnn_1N, Centrosomin N-terminal motif 1.  This domain 
has been identified in two microtubule associated proteins 
in Schizosaccharomyces pombe, Mto1 and Pcp1. Mto1 has been 
identified in association with spindle pole body and non-spindle 
pole body microtubules. The pericentrin homolog Pcp1 is 
also associated with the fungal centrosome or spindle pole 
body (SPB). Members of this family have been named centrosomins, 
and are an essential mitotic centrosome component required 
for assembly of all other known pericentriolar matrix proteins 
in order to achieve microtubule-organising activity 
in fission yeast. Cnn_1N is a short conserved motif towards 
the N-terminus. Motif 1 is found to be necessary for proper 
recruitment of gamma-tubulin, D-TACC (the homolog of vertebrate 
transforming acidic coiled-coil proteins [TACC]), and Minispindles 
(Msps) to embryonic centrosomes but is not required 
for assembly of other centrosome components including Aurora 
A kinase and CP60 in Drosophila.
Length=69

 Score =  99 bits (250),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 0/69 (0%)

Query  624  KEQSSTIDRLSKENFDLKMRIHFLNEALNRRSEEGIKEMISENVELKSDKLKLQKDNQNL  683
            +EQ   ID+L KENF+LK++IHFL E L + + E I+E + EN+ELK +   LQ++ + L
Sbjct  1    REQEKQIDKLKKENFNLKLKIHFLEERLEKLAPEQIEEALKENIELKVELETLQRELKKL  60

Query  684  KRKIRDLEK  692
            K+ +R+ EK
Sbjct  61   KKLLREAEK  69


>CDD:315477 pfam12808, Mto2_bdg, Micro-tubular organizer Mto1 C-term Mto2-binding 
region.  The C-terminal region of the micro-tubular 
organizer protein 1 (mto1) is the binding domain for attachment 
to Mto2p.The full-length Mto1 protein is required for microtubule 
nucleation from non-spindle pole body MTOCs in fission 
yeast. The interaction of Mto2p with this region of Mto1 
is critical for anchoring the cytokinetic actin ring to the 
medial region of the cell and for proper coordination of 
mitosis with cytokinesis.
Length=52

 Score = 74.8 bits (184),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 34/52 (65%), Positives = 43/52 (83%), Gaps = 0/52 (0%)

Query  1602  RWIHRLRELEKRLKAEREARLLDRSGARKRLEERDAENQRLRAQLERQRMRR  1653
             +W+HRLRELE++LKAEREARLLDRSGAR+RLEE + EN+ L+A+L   R   
Sbjct  1     KWLHRLRELERQLKAEREARLLDRSGARERLEELNGENRLLKAELNLLRSHS  52


>CDD:464943 pfam15921, CCDC158, Coiled-coil domain-containing protein 158. 
 CCDC158 is a family of proteins found in eukaryotes. The 
function is not known.
Length=1112

 Score = 82.1 bits (202),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 157/743 (21%), Positives = 322/743 (43%), Gaps = 114/743 (15%)

Query  677   QKDNQNLKRKIRDLEKQLKDQQSDKESMANHDPEGSDEDSRDAAQDEEILFMRERQEAYE  736
             +K    L++ + DL+ +L++ Q ++++MA        +  R  +Q +E L  + +   +E
Sbjct  102   EKQKFYLRQSVIDLQTKLQEMQMERDAMA--------DIRRRESQSQEDLRNQLQNTVHE  153

Query  737   LEIERLRSESIVRES----EKRR---------LAEMVKALSDRPVGSEAGAREERDM---  780
             LE  +   E ++ +S    E+ R         L E+   L D    S     E   M   
Sbjct  154   LEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTM  213

Query  781   -WKDMLDAETAAREQAEEENKRIK-------DEIQALRNELNYVIALPRAGQRDRVGSMI  832
              ++ +  A +    + + E   +K       D+++AL++E    I L     +DR+  +I
Sbjct  214   HFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLI  273

Query  833   SYTTASDRDMTRMPTLTSSSSDTLVEEIRLL----RQENAELRREVS---AQTSMLTSRN  885
             S        +T   +   S ++++  ++ ++    R +N+   R++S   +  S L S  
Sbjct  274   SEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSEL  333

Query  886   KEKERLYQE-IEELKLGQRRDGVRSVAGDSIFDRSASRAQ-GRSSSRASDGTGPSRSDDA  943
             +E +R+Y++ IEEL      +    +A   + +    R Q  + S    D      +D  
Sbjct  334   REAKRMYEDKIEEL------EKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLH  387

Query  944   ERE---DLEQRIDQ-LRDQVSALKLENQTIRAELEER---IAEYDALDKQYQADVDGADE  996
             +RE    LE+  ++ L D+ +   +    +R EL++R   +   +AL K  +++  G  E
Sbjct  388   KREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQME  447

Query  997   MFNALHQERDEAERKMNDCLVNMQIMDAQYTEDIENLEEEVRRKTEECERLEEELRNQDE  1056
                A  Q ++E+  K++     ++       E +  + EE+  K    E  E  + +   
Sbjct  448   RQMAAIQGKNESLEKVSSLTAQLE----STKEMLRKVVEELTAKKMTLESSERTVSDLTA  503

Query  1057  NLRALQAEMRSASEGIIRLEEDAQTNLQRYEKVQRE---LQDCNREMEALEKSLYEANTK  1113
             +L+  +  + + +  I +L       LQ  + ++ E   L++   E EAL+  + E +  
Sbjct  504   SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKV  563

Query  1114  VQRLTVQIESSQNEIAFLREEQDGDKIRIGDLESELKTCQMSLQS------ERD-KVKEL  1166
             ++ L  QIE+    +          ++    LE E+   ++ LQ       ++D K++EL
Sbjct  564   IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIREL  623

Query  1167  ESRLAE---ERHQREVVGTKE-------KQEVQRIINELN---REASSAREEARRLKKSL  1213
             E+R+++   E+ +    G++        KQE  +++NE+     E +S  E+   LK++ 
Sbjct  624   EARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF  683

Query  1214  --SAQEIETATWRERLM------DLENNLRETLGDLTGSRSSLISNIMKLQKELESTALE  1265
                ++E+ET T + ++       +LE   R TL  + GS    +   M +QK++ +   +
Sbjct  684   RNKSEEMETTTNKLKMQLKSAQSELEQT-RNTLKSMEGSDGHAMKVAMGMQKQITAKRGQ  742

Query  1266  LESVRSKLDEKETLLRNRDALLESHGLESRKLSELLERERQARRADKQSFEQALKSHHQA  1325
             +++++SK+   E  + N +                  +E+   + +K    Q L      
Sbjct  743   IDALQSKIQFLEEAMTNAN------------------KEKHFLKEEKNKLSQEL------  778

Query  1326  SRTITQNNSRITELENARSQDRK  1348
             S   T+ N    ELE  RSQ+R+
Sbjct  779   STVATEKNKMAGELEVLRSQERR  801


>CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain 
is found at the N-terminus of SMC proteins. The SMC (structural 
maintenance of chromosomes) superfamily proteins have 
ATP-binding domains at the N- and C-termini, and two extended 
coiled-coil domains separated by a hinge in the middle. The 
eukaryotic SMC proteins form two kind of heterodimers: the 
SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute 
an essential part of higher order complexes, which are 
involved in chromatin and DNA dynamics. This family also includes 
the RecF and RecN proteins that are involved in DNA 
metabolism and recombination.
Length=1161

 Score = 73.5 bits (180),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 109/761 (14%), Positives = 218/761 (29%), Gaps = 49/761 (6%)

Query  623   LKEQSSTIDRLSKENFDLKMRIHFLNEALNRRSEEGIKEMISENVELKSDKLKLQKDNQN  682
               ++     +L +E   L  +     ++   + E    +   +  E + +K K +K+ + 
Sbjct  273   ENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK  332

Query  683   LKRKIRDLEKQLKDQQSDKESMANHDPEGSDEDSRDAAQDEEILFMRERQEAYEL---EI  739
              K +I +LEK+LK+ +  +E                 A++EE   + + QE  E    E+
Sbjct  333   EKEEIEELEKELKELEIKRE-----------------AEEEEEEELEKLQEKLEQLEEEL  375

Query  740   ERLRSESIVRESEKRRLAEMVKALSDRPVGSEAGAREERDMWKDMLDAE--TAAREQAEE  797
                +     R S   +L E    L            E     +D+L  E         EE
Sbjct  376   LAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEE  435

Query  798   ENKRIKDEIQALRNELNYVIALPRAGQRDRVGSMISYTTASDRDMTRMPTLTSSSSDTLV  857
             E      + +    +        +  + +             + +     L    S   +
Sbjct  436   EESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKL  495

Query  858   EEIRLLRQENAE----LRREVSAQTSMLTSRNKEKERLYQEIEELKLGQR---RDGVRSV  910
             EE      +       L   +             +        E              S 
Sbjct  496   EERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA  555

Query  911   AGDSIFDRSASRAQGRSSSRASDGTGPSRSDDA--EREDLEQRIDQLRDQVSALKLENQT  968
               D + +R             +              +      ID + +     K   + 
Sbjct  556   TADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA  615

Query  969   IRAELEERIAEYDALDKQYQADVDGADEMFNALHQERDEAERKMNDCLVNMQIMDAQYTE  1028
                +   ++ E    D +     + A    + L +     E       V   + +     
Sbjct  616   DEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKEL  675

Query  1029  DIENLEEEVRRKTEECERLEEELRNQDENLRALQAEMRSASEGIIRLEEDAQTNLQRYEK  1088
                   +E        E +        +  +  + E++        L  D     Q    
Sbjct  676   LEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN  735

Query  1089  VQRELQDC--NREMEALEKSLYEANTKVQRLTVQIESSQNEIAFLREEQDGDKIRIGDLE  1146
              + +L     + E E  EKS  +   K +       S + +      E+        + E
Sbjct  736   EELKLLKQKIDEEEEEEEKSRLKKEEKEEEK--SELSLKEKELAEEREKTEKLKVEEEKE  793

Query  1147  SELKTCQMSLQSERDKVKELESRLAEERHQREVVGTKEKQEVQRIINELNREASSAREEA  1206
              +LK  +  L++  +++KE    L EE           +QE +    EL   A   +EE 
Sbjct  794   EKLKAQEEELRALEEELKEEAELLEEE-------QLLIEQEEKIKEEELEELALELKEEQ  846

Query  1207  RRLKKSLSAQEIETATWRERLMDLENNLRETLGDLTGSRSSLISNIMKLQKELESTALEL  1266
             +  K +    E       +  +  E  L+E   +    +  L S   K ++E +    E 
Sbjct  847   KLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKE-LEEE  905

Query  1267  ESVRSKLDEKETLLRNRDALLESHGLESRKLSELLERERQARRADKQSFEQALKSHHQAS  1326
                 + L+EKE  +  R            K  E  E        +K+  E   +   +  
Sbjct  906   SQKLNLLEEKENEIEERIKEEA---EILLKYEEEPEELLLEEADEKEKEENNKE---EEE  959

Query  1327  RTITQNNSRITELENARSQDRKRFTALEQQFKEQLNERNSM  1367
                 +      EL        + F   E+++ +   E+  +
Sbjct  960   ERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERL  1000



Lambda      K        H        a         alpha
   0.309    0.125    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2147742344


Query= TCONS_00026590

Length=1637
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462333 pfam07989, Cnn_1N, Centrosomin N-terminal motif 1. Thi...  99.1    2e-25
CDD:315477 pfam12808, Mto2_bdg, Micro-tubular organizer Mto1 C-te...  73.7    1e-16
CDD:464943 pfam15921, CCDC158, Coiled-coil domain-containing prot...  79.4    3e-15
CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. Thi...  71.2    1e-12


>CDD:462333 pfam07989, Cnn_1N, Centrosomin N-terminal motif 1.  This domain 
has been identified in two microtubule associated proteins 
in Schizosaccharomyces pombe, Mto1 and Pcp1. Mto1 has been 
identified in association with spindle pole body and non-spindle 
pole body microtubules. The pericentrin homolog Pcp1 is 
also associated with the fungal centrosome or spindle pole 
body (SPB). Members of this family have been named centrosomins, 
and are an essential mitotic centrosome component required 
for assembly of all other known pericentriolar matrix proteins 
in order to achieve microtubule-organising activity 
in fission yeast. Cnn_1N is a short conserved motif towards 
the N-terminus. Motif 1 is found to be necessary for proper 
recruitment of gamma-tubulin, D-TACC (the homolog of vertebrate 
transforming acidic coiled-coil proteins [TACC]), and Minispindles 
(Msps) to embryonic centrosomes but is not required 
for assembly of other centrosome components including Aurora 
A kinase and CP60 in Drosophila.
Length=69

 Score = 99.1 bits (248),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 0/69 (0%)

Query  555  KEQSSTIDRLSKENFDLKMRIHFLNEALNRRSEEGIKEMISENVELKSDKLKLQKDNQNL  614
            +EQ   ID+L KENF+LK++IHFL E L + + E I+E + EN+ELK +   LQ++ + L
Sbjct  1    REQEKQIDKLKKENFNLKLKIHFLEERLEKLAPEQIEEALKENIELKVELETLQRELKKL  60

Query  615  KRKIRDLEK  623
            K+ +R+ EK
Sbjct  61   KKLLREAEK  69


>CDD:315477 pfam12808, Mto2_bdg, Micro-tubular organizer Mto1 C-term Mto2-binding 
region.  The C-terminal region of the micro-tubular 
organizer protein 1 (mto1) is the binding domain for attachment 
to Mto2p.The full-length Mto1 protein is required for microtubule 
nucleation from non-spindle pole body MTOCs in fission 
yeast. The interaction of Mto2p with this region of Mto1 
is critical for anchoring the cytokinetic actin ring to the 
medial region of the cell and for proper coordination of 
mitosis with cytokinesis.
Length=52

 Score = 73.7 bits (181),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 34/52 (65%), Positives = 43/52 (83%), Gaps = 0/52 (0%)

Query  1533  RWIHRLRELEKRLKAEREARLLDRSGARKRLEERDAENQRLRAQLERQRMRR  1584
             +W+HRLRELE++LKAEREARLLDRSGAR+RLEE + EN+ L+A+L   R   
Sbjct  1     KWLHRLRELERQLKAEREARLLDRSGARERLEELNGENRLLKAELNLLRSHS  52


>CDD:464943 pfam15921, CCDC158, Coiled-coil domain-containing protein 158. 
 CCDC158 is a family of proteins found in eukaryotes. The 
function is not known.
Length=1112

 Score = 79.4 bits (195),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 157/743 (21%), Positives = 322/743 (43%), Gaps = 114/743 (15%)

Query  608   QKDNQNLKRKIRDLEKQLKDQQSDKESMANHDPEGSDEDSRDAAQDEEILFMRERQEAYE  667
             +K    L++ + DL+ +L++ Q ++++MA        +  R  +Q +E L  + +   +E
Sbjct  102   EKQKFYLRQSVIDLQTKLQEMQMERDAMA--------DIRRRESQSQEDLRNQLQNTVHE  153

Query  668   LEIERLRSESIVRES----EKRR---------LAEMVKALSDRPVGSEAGAREERDM---  711
             LE  +   E ++ +S    E+ R         L E+   L D    S     E   M   
Sbjct  154   LEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTM  213

Query  712   -WKDMLDAETAAREQAEEENKRIK-------DEIQALRNELNYVIALPRAGQRDRVGSMI  763
              ++ +  A +    + + E   +K       D+++AL++E    I L     +DR+  +I
Sbjct  214   HFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLI  273

Query  764   SYTTASDRDMTRMPTLTSSSSDTLVEEIRLL----RQENAELRREVS---AQTSMLTSRN  816
             S        +T   +   S ++++  ++ ++    R +N+   R++S   +  S L S  
Sbjct  274   SEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSEL  333

Query  817   KEKERLYQE-IEELKLGQRRDGVRSVAGDSIFDRSASRAQ-GRSSSRASDGTGPSRSDDA  874
             +E +R+Y++ IEEL      +    +A   + +    R Q  + S    D      +D  
Sbjct  334   REAKRMYEDKIEEL------EKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLH  387

Query  875   ERE---DLEQRIDQ-LRDQVSALKLENQTIRAELEER---IAEYDALDKQYQADVDGADE  927
             +RE    LE+  ++ L D+ +   +    +R EL++R   +   +AL K  +++  G  E
Sbjct  388   KREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQME  447

Query  928   MFNALHQERDEAERKMNDCLVNMQIMDAQYTEDIENLEEEVRRKTEECERLEEELRNQDE  987
                A  Q ++E+  K++     ++       E +  + EE+  K    E  E  + +   
Sbjct  448   RQMAAIQGKNESLEKVSSLTAQLE----STKEMLRKVVEELTAKKMTLESSERTVSDLTA  503

Query  988   NLRALQAEMRSASEGIIRLEEDAQTNLQRYEKVQRE---LQDCNREMEALEKSLYEANTK  1044
             +L+  +  + + +  I +L       LQ  + ++ E   L++   E EAL+  + E +  
Sbjct  504   SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKV  563

Query  1045  VQRLTVQIESSQNEIAFLREEQDGDKIRIGDLESELKTCQMSLQS------ERD-KVKEL  1097
             ++ L  QIE+    +          ++    LE E+   ++ LQ       ++D K++EL
Sbjct  564   IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIREL  623

Query  1098  ESRLAE---ERHQREVVGTKE-------KQEVQRIINELN---REASSAREEARRLKKSL  1144
             E+R+++   E+ +    G++        KQE  +++NE+     E +S  E+   LK++ 
Sbjct  624   EARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF  683

Query  1145  --SAQEIETATWRERLM------DLENNLRETLGDLTGSRSSLISNIMKLQKELESTALE  1196
                ++E+ET T + ++       +LE   R TL  + GS    +   M +QK++ +   +
Sbjct  684   RNKSEEMETTTNKLKMQLKSAQSELEQT-RNTLKSMEGSDGHAMKVAMGMQKQITAKRGQ  742

Query  1197  LESVRSKLDEKETLLRNRDALLESHGLESRKLSELLERERQARRADKQSFEQALKSHHQA  1256
             +++++SK+   E  + N +                  +E+   + +K    Q L      
Sbjct  743   IDALQSKIQFLEEAMTNAN------------------KEKHFLKEEKNKLSQEL------  778

Query  1257  SRTITQNNSRITELENARSQDRK  1279
             S   T+ N    ELE  RSQ+R+
Sbjct  779   STVATEKNKMAGELEVLRSQERR  801


>CDD:426784 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain 
is found at the N-terminus of SMC proteins. The SMC (structural 
maintenance of chromosomes) superfamily proteins have 
ATP-binding domains at the N- and C-termini, and two extended 
coiled-coil domains separated by a hinge in the middle. The 
eukaryotic SMC proteins form two kind of heterodimers: the 
SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute 
an essential part of higher order complexes, which are 
involved in chromatin and DNA dynamics. This family also includes 
the RecF and RecN proteins that are involved in DNA 
metabolism and recombination.
Length=1161

 Score = 71.2 bits (174),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 109/761 (14%), Positives = 218/761 (29%), Gaps = 49/761 (6%)

Query  554   LKEQSSTIDRLSKENFDLKMRIHFLNEALNRRSEEGIKEMISENVELKSDKLKLQKDNQN  613
               ++     +L +E   L  +     ++   + E    +   +  E + +K K +K+ + 
Sbjct  273   ENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK  332

Query  614   LKRKIRDLEKQLKDQQSDKESMANHDPEGSDEDSRDAAQDEEILFMRERQEAYEL---EI  670
              K +I +LEK+LK+ +  +E                 A++EE   + + QE  E    E+
Sbjct  333   EKEEIEELEKELKELEIKRE-----------------AEEEEEEELEKLQEKLEQLEEEL  375

Query  671   ERLRSESIVRESEKRRLAEMVKALSDRPVGSEAGAREERDMWKDMLDAE--TAAREQAEE  728
                +     R S   +L E    L            E     +D+L  E         EE
Sbjct  376   LAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEE  435

Query  729   ENKRIKDEIQALRNELNYVIALPRAGQRDRVGSMISYTTASDRDMTRMPTLTSSSSDTLV  788
             E      + +    +        +  + +             + +     L    S   +
Sbjct  436   EESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKL  495

Query  789   EEIRLLRQENAE----LRREVSAQTSMLTSRNKEKERLYQEIEELKLGQR---RDGVRSV  841
             EE      +       L   +             +        E              S 
Sbjct  496   EERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA  555

Query  842   AGDSIFDRSASRAQGRSSSRASDGTGPSRSDDA--EREDLEQRIDQLRDQVSALKLENQT  899
               D + +R             +              +      ID + +     K   + 
Sbjct  556   TADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA  615

Query  900   IRAELEERIAEYDALDKQYQADVDGADEMFNALHQERDEAERKMNDCLVNMQIMDAQYTE  959
                +   ++ E    D +     + A    + L +     E       V   + +     
Sbjct  616   DEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKEL  675

Query  960   DIENLEEEVRRKTEECERLEEELRNQDENLRALQAEMRSASEGIIRLEEDAQTNLQRYEK  1019
                   +E        E +        +  +  + E++        L  D     Q    
Sbjct  676   LEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN  735

Query  1020  VQRELQDC--NREMEALEKSLYEANTKVQRLTVQIESSQNEIAFLREEQDGDKIRIGDLE  1077
              + +L     + E E  EKS  +   K +       S + +      E+        + E
Sbjct  736   EELKLLKQKIDEEEEEEEKSRLKKEEKEEEK--SELSLKEKELAEEREKTEKLKVEEEKE  793

Query  1078  SELKTCQMSLQSERDKVKELESRLAEERHQREVVGTKEKQEVQRIINELNREASSAREEA  1137
              +LK  +  L++  +++KE    L EE           +QE +    EL   A   +EE 
Sbjct  794   EKLKAQEEELRALEEELKEEAELLEEE-------QLLIEQEEKIKEEELEELALELKEEQ  846

Query  1138  RRLKKSLSAQEIETATWRERLMDLENNLRETLGDLTGSRSSLISNIMKLQKELESTALEL  1197
             +  K +    E       +  +  E  L+E   +    +  L S   K ++E +    E 
Sbjct  847   KLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKE-LEEE  905

Query  1198  ESVRSKLDEKETLLRNRDALLESHGLESRKLSELLERERQARRADKQSFEQALKSHHQAS  1257
                 + L+EKE  +  R            K  E  E        +K+  E   +   +  
Sbjct  906   SQKLNLLEEKENEIEERIKEEA---EILLKYEEEPEELLLEEADEKEKEENNKE---EEE  959

Query  1258  RTITQNNSRITELENARSQDRKRFTALEQQFKEQLNERNSM  1298
                 +      EL        + F   E+++ +   E+  +
Sbjct  960   ERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERL  1000



Lambda      K        H        a         alpha
   0.308    0.124    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2087007556


Query= TCONS_00021493

Length=979
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:315477 pfam12808, Mto2_bdg, Micro-tubular organizer Mto1 C-te...  63.6    2e-13
CDD:464943 pfam15921, CCDC158, Coiled-coil domain-containing prot...  67.1    1e-11


>CDD:315477 pfam12808, Mto2_bdg, Micro-tubular organizer Mto1 C-term Mto2-binding 
region.  The C-terminal region of the micro-tubular 
organizer protein 1 (mto1) is the binding domain for attachment 
to Mto2p.The full-length Mto1 protein is required for microtubule 
nucleation from non-spindle pole body MTOCs in fission 
yeast. The interaction of Mto2p with this region of Mto1 
is critical for anchoring the cytokinetic actin ring to the 
medial region of the cell and for proper coordination of 
mitosis with cytokinesis.
Length=52

 Score = 63.6 bits (155),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 34/52 (65%), Positives = 43/52 (83%), Gaps = 0/52 (0%)

Query  875  RWIHRLRELEKRLKAEREARLLDRSGARKRLEERDAENQRLRAQLERQRMRR  926
            +W+HRLRELE++LKAEREARLLDRSGAR+RLEE + EN+ L+A+L   R   
Sbjct  1    KWLHRLRELERQLKAEREARLLDRSGARERLEELNGENRLLKAELNLLRSHS  52


>CDD:464943 pfam15921, CCDC158, Coiled-coil domain-containing protein 158. 
 CCDC158 is a family of proteins found in eukaryotes. The 
function is not known.
Length=1112

 Score = 67.1 bits (163),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 127/594 (21%), Positives = 262/594 (44%), Gaps = 82/594 (14%)

Query  75   IKDEIQALRNELNYVIALPRAGQRDRVGSMISYTTASDRDMTRMPTLTSSSSDTLVEEIR  134
            ++D+++AL++E    I L     +DR+  +IS        +T   +   S ++++  ++ 
Sbjct  243  VEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLE  302

Query  135  LL----RQENAELRREVS---AQTSMLTSRNKEKERLYQE-IEELKLGQRRDGVRSVAGD  186
            ++    R +N+   R++S   +  S L S  +E +R+Y++ IEEL      +    +A  
Sbjct  303  IIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEEL------EKQLVLANS  356

Query  187  SIFDRSASRAQ-GRSSSRASDGTGPSRSDDAERE---DLEQRIDQ-LRDQVSALKLENQT  241
             + +    R Q  + S    D      +D  +RE    LE+  ++ L D+ +   +    
Sbjct  357  ELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDH  416

Query  242  IRAELEER---IAEYDALDKQYQADVDGADEMFNALHQERDEAERKMNDCLVNMQIMDAQ  298
            +R EL++R   +   +AL K  +++  G  E   A  Q ++E+  K++     ++     
Sbjct  417  LRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLE----S  472

Query  299  YTEDIENLEEEVRRKTEECERLEEELRNQDENLRALQAEMRSASEGIIRLEEDAQTNLQR  358
              E +  + EE+  K    E  E  + +   +L+  +  + + +  I +L       LQ 
Sbjct  473  TKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQE  532

Query  359  YEKVQRE---LQDCNREMEALEKSLYEANTKVQRLTVQIESSQNEIAFLREEQDGDKIRI  415
             + ++ E   L++   E EAL+  + E +  ++ L  QIE+    +          ++  
Sbjct  533  LQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEK  592

Query  416  GDLESELKTCQMSLQS-------ERDKVKELESRLAE---ERHQREVVGTKE-------K  458
              LE E+   ++ LQ        +  K++ELE+R+++   E+ +    G++        K
Sbjct  593  AQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIK  652

Query  459  QEVQRIINELN---REASSAREEARRLKKSL--SAQEIETATWRERLM------DLENNL  507
            QE  +++NE+     E +S  E+   LK++    ++E+ET T + ++       +LE   
Sbjct  653  QERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQT-  711

Query  508  RETLGDLTGSRSSLISNIMKLQKELESTALELESVRSKLDEKETLLRNRDALLESHGLES  567
            R TL  + GS    +   M +QK++ +   ++++++SK+   E  + N +          
Sbjct  712  RNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNAN----------  761

Query  568  RKLSELLERERQARRADKQSFEQALKSHHQASRTITQNNSRITELENARSQDRK  621
                    +E+   + +K    Q L      S   T+ N    ELE  RSQ+R+
Sbjct  762  --------KEKHFLKEEKNKLSQEL------STVATEKNKMAGELEVLRSQERR  801



Lambda      K        H        a         alpha
   0.310    0.126    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0725    0.140     1.90     42.6     43.6 

Effective search space used: 1250218508


Query= TCONS_00026591

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00021495

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00021496

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00021497

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00021498

Length=255


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 277421980


Query= TCONS_00021499

Length=105
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396013 pfam01263, Aldose_epim, Aldose 1-epimerase                 67.8    2e-15


>CDD:396013 pfam01263, Aldose_epim, Aldose 1-epimerase.  
Length=300

 Score = 67.8 bits (166),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 24/87 (28%), Positives = 40/87 (46%), Gaps = 8/87 (9%)

Query  15   QPLKLLAQFSHPDTGLHLEVHSTEPAFQFYTGKYINVPAMDGLPARVARAGFCVEPSRYV  74
             PLK +     P +G+ LEV +T+P    YT  ++    +          GF +E     
Sbjct  222  DPLKAVIIDPDPGSGIVLEVSTTQPGLVVYTPNFLKGKYLS-------DEGFALETQFLP  274

Query  75   NAPNEPGWRSMVLLKKGQIFGCKTVYK  101
            + PN P + S ++LK G+ +  +T Y 
Sbjct  275  DEPNHPEFPS-IILKPGESYTAETSYS  300



Lambda      K        H        a         alpha
   0.320    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00026592

Length=105
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396013 pfam01263, Aldose_epim, Aldose 1-epimerase                 67.8    2e-15


>CDD:396013 pfam01263, Aldose_epim, Aldose 1-epimerase.  
Length=300

 Score = 67.8 bits (166),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 24/87 (28%), Positives = 40/87 (46%), Gaps = 8/87 (9%)

Query  15   QPLKLLAQFSHPDTGLHLEVHSTEPAFQFYTGKYINVPAMDGLPARVARAGFCVEPSRYV  74
             PLK +     P +G+ LEV +T+P    YT  ++    +          GF +E     
Sbjct  222  DPLKAVIIDPDPGSGIVLEVSTTQPGLVVYTPNFLKGKYLS-------DEGFALETQFLP  274

Query  75   NAPNEPGWRSMVLLKKGQIFGCKTVYK  101
            + PN P + S ++LK G+ +  +T Y 
Sbjct  275  DEPNHPEFPS-IILKPGESYTAETSYS  300



Lambda      K        H        a         alpha
   0.320    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00021500

Length=255


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 277421980


Query= TCONS_00026593

Length=601
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463873 pfam13426, PAS_9, PAS domain                               74.0    9e-17
CDD:425605 pfam00320, GATA, GATA zinc finger. This domain uses fo...  67.0    6e-15
CDD:430001 pfam08447, PAS_3, PAS fold. The PAS fold corresponds t...  63.1    4e-13


>CDD:463873 pfam13426, PAS_9, PAS domain.  
Length=93

 Score = 74.0 bits (182),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 52/107 (49%), Gaps = 15/107 (14%)

Query  42   DHPIIYVSEAFVRLTGYTEREIVGQNCRFLQDPSGVVQRGMPRKFVDQHTAFRLRSTIE-  100
            D  IIYV++A +RL GYT  E++G++   L              F +   + RLR  +  
Sbjct  1    DGRIIYVNDAALRLLGYTREELLGKSITDL--------------FAEPEDSERLREALRE  46

Query  101  HRGEIQATIINYRKGGQPFMNLITMVPVRWNSPDYRFYVGFQVDLVE  147
             +   +  ++ YRK G+PF  L+++ P+R +  +    +    D+ E
Sbjct  47   GKAVREFEVVLYRKDGEPFPVLVSLAPIRDDGGELVGIIAILRDITE  93


>CDD:425605 pfam00320, GATA, GATA zinc finger.  This domain uses four cysteine 
residues to coordinate a zinc ion. This domain binds to 
DNA. Two GATA zinc fingers are found in the GATA transcription 
factors. However there are several proteins which only 
contain a single copy of the domain.
Length=36

 Score = 67.0 bits (164),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 20/32 (63%), Positives = 24/32 (75%), Gaps = 0/32 (0%)

Query  557  CAMCQTRTTPEWRRGPSGNRDLCNSCGLRWAK  588
            C+ C T  TP WRRGP+GNR LCN+CGL + K
Sbjct  1    CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKK  32


>CDD:430001 pfam08447, PAS_3, PAS fold.  The PAS fold corresponds to the 
structural domain that has previously been defined as PAS and 
PAC motifs. The PAS fold appears in archaea, eubacteria and 
eukarya.
Length=89

 Score = 63.1 bits (154),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 3/84 (4%)

Query  236  LYISPSCRKVLGYDPNELIGK--TLSTICHPSDIGPVIRDLRSCTNSD-PVSVMYRVRTK  292
            +Y SP   ++LGY P EL+GK  +   + HP D   V   L        P S  YR+R K
Sbjct  2    IYWSPRFEEILGYTPEELLGKGESWLDLVHPDDRERVREALWEALKGGEPYSGEYRIRRK  61

Query  293  YSGYMWFESHGSWHIGDRGRQYLV  316
               Y W E+       + G+   V
Sbjct  62   DGEYRWVEARARPIRDENGKPVRV  85



Lambda      K        H        a         alpha
   0.319    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 760663852


Query= TCONS_00021508

Length=867
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463873 pfam13426, PAS_9, PAS domain                               74.0    1e-16
CDD:425605 pfam00320, GATA, GATA zinc finger. This domain uses fo...  67.0    8e-15
CDD:430001 pfam08447, PAS_3, PAS fold. The PAS fold corresponds t...  63.9    4e-13


>CDD:463873 pfam13426, PAS_9, PAS domain.  
Length=93

 Score = 74.0 bits (182),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 52/107 (49%), Gaps = 15/107 (14%)

Query  308  DHPIIYVSEAFVRLTGYTEREIVGQNCRFLQDPSGVVQRGMPRKFVDQHTAFRLRSTIE-  366
            D  IIYV++A +RL GYT  E++G++   L              F +   + RLR  +  
Sbjct  1    DGRIIYVNDAALRLLGYTREELLGKSITDL--------------FAEPEDSERLREALRE  46

Query  367  HRGEIQATIINYRKGGQPFMNLITMVPVRWNSPDYRFYVGFQVDLVE  413
             +   +  ++ YRK G+PF  L+++ P+R +  +    +    D+ E
Sbjct  47   GKAVREFEVVLYRKDGEPFPVLVSLAPIRDDGGELVGIIAILRDITE  93


>CDD:425605 pfam00320, GATA, GATA zinc finger.  This domain uses four cysteine 
residues to coordinate a zinc ion. This domain binds to 
DNA. Two GATA zinc fingers are found in the GATA transcription 
factors. However there are several proteins which only 
contain a single copy of the domain.
Length=36

 Score = 67.0 bits (164),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 20/32 (63%), Positives = 24/32 (75%), Gaps = 0/32 (0%)

Query  823  CAMCQTRTTPEWRRGPSGNRDLCNSCGLRWAK  854
            C+ C T  TP WRRGP+GNR LCN+CGL + K
Sbjct  1    CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKK  32


>CDD:430001 pfam08447, PAS_3, PAS fold.  The PAS fold corresponds to the 
structural domain that has previously been defined as PAS and 
PAC motifs. The PAS fold appears in archaea, eubacteria and 
eukarya.
Length=89

 Score = 63.9 bits (156),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 3/84 (4%)

Query  502  LYISPSCRKVLGYDPNELIGK--TLSTICHPSDIGPVIRDLRSCTNSD-PVSVMYRVRTK  558
            +Y SP   ++LGY P EL+GK  +   + HP D   V   L        P S  YR+R K
Sbjct  2    IYWSPRFEEILGYTPEELLGKGESWLDLVHPDDRERVREALWEALKGGEPYSGEYRIRRK  61

Query  559  YSGYMWFESHGSWHIGDRGRQYLV  582
               Y W E+       + G+   V
Sbjct  62   DGEYRWVEARARPIRDENGKPVRV  85



Lambda      K        H        a         alpha
   0.316    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1108216808


Query= TCONS_00021501

Length=87
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  73.7    6e-19


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 73.7 bits (182),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 23/48 (48%), Positives = 31/48 (65%), Gaps = 0/48 (0%)

Query  37   VKIIAGNKCDLKDNRAISAREGLEYARKHGCGFMETSARDMVNIEETF  84
              ++ GNKCDL+D R +S  EG   A++ G  FMETSA+   N+EE F
Sbjct  106  PIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAF  153



Lambda      K        H        a         alpha
   0.317    0.135    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00021502

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425605 pfam00320, GATA, GATA zinc finger. This domain uses fo...  67.0    4e-15
CDD:430001 pfam08447, PAS_3, PAS fold. The PAS fold corresponds t...  63.9    2e-13


>CDD:425605 pfam00320, GATA, GATA zinc finger.  This domain uses four cysteine 
residues to coordinate a zinc ion. This domain binds to 
DNA. Two GATA zinc fingers are found in the GATA transcription 
factors. However there are several proteins which only 
contain a single copy of the domain.
Length=36

 Score = 67.0 bits (164),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 20/32 (63%), Positives = 24/32 (75%), Gaps = 0/32 (0%)

Query  396  CAMCQTRTTPEWRRGPSGNRDLCNSCGLRWAK  427
            C+ C T  TP WRRGP+GNR LCN+CGL + K
Sbjct  1    CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKK  32


>CDD:430001 pfam08447, PAS_3, PAS fold.  The PAS fold corresponds to the 
structural domain that has previously been defined as PAS and 
PAC motifs. The PAS fold appears in archaea, eubacteria and 
eukarya.
Length=89

 Score = 63.9 bits (156),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 3/84 (4%)

Query  75   LYISPSCRKVLGYDPNELIGK--TLSTICHPSDIGPVIRDLRSCTNSD-PVSVMYRVRTK  131
            +Y SP   ++LGY P EL+GK  +   + HP D   V   L        P S  YR+R K
Sbjct  2    IYWSPRFEEILGYTPEELLGKGESWLDLVHPDDRERVREALWEALKGGEPYSGEYRIRRK  61

Query  132  YSGYMWFESHGSWHIGDRGRQYLV  155
               Y W E+       + G+   V
Sbjct  62   DGEYRWVEARARPIRDENGKPVRV  85



Lambda      K        H        a         alpha
   0.317    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00021503

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463873 pfam13426, PAS_9, PAS domain                               74.0    6e-17


>CDD:463873 pfam13426, PAS_9, PAS domain.  
Length=93

 Score = 74.0 bits (182),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 52/107 (49%), Gaps = 15/107 (14%)

Query  308  DHPIIYVSEAFVRLTGYTEREIVGQNCRFLQDPSGVVQRGMPRKFVDQHTAFRLRSTIE-  366
            D  IIYV++A +RL GYT  E++G++   L              F +   + RLR  +  
Sbjct  1    DGRIIYVNDAALRLLGYTREELLGKSITDL--------------FAEPEDSERLREALRE  46

Query  367  HRGEIQATIINYRKGGQPFMNLITMVPVRWNSPDYRFYVGFQVDLVE  413
             +   +  ++ YRK G+PF  L+++ P+R +  +    +    D+ E
Sbjct  47   GKAVREFEVVLYRKDGEPFPVLVSLAPIRDDGGELVGIIAILRDITE  93



Lambda      K        H        a         alpha
   0.316    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00021506

Length=87
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  73.7    6e-19


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 73.7 bits (182),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 23/48 (48%), Positives = 31/48 (65%), Gaps = 0/48 (0%)

Query  37   VKIIAGNKCDLKDNRAISAREGLEYARKHGCGFMETSARDMVNIEETF  84
              ++ GNKCDL+D R +S  EG   A++ G  FMETSA+   N+EE F
Sbjct  106  PIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAF  153



Lambda      K        H        a         alpha
   0.317    0.135    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00021505

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00021504

Length=87
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  73.7    6e-19


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 73.7 bits (182),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 23/48 (48%), Positives = 31/48 (65%), Gaps = 0/48 (0%)

Query  37   VKIIAGNKCDLKDNRAISAREGLEYARKHGCGFMETSARDMVNIEETF  84
              ++ GNKCDL+D R +S  EG   A++ G  FMETSA+   N+EE F
Sbjct  106  PIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAF  153



Lambda      K        H        a         alpha
   0.317    0.135    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00026594

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463873 pfam13426, PAS_9, PAS domain                               74.0    6e-17


>CDD:463873 pfam13426, PAS_9, PAS domain.  
Length=93

 Score = 74.0 bits (182),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 52/107 (49%), Gaps = 15/107 (14%)

Query  308  DHPIIYVSEAFVRLTGYTEREIVGQNCRFLQDPSGVVQRGMPRKFVDQHTAFRLRSTIE-  366
            D  IIYV++A +RL GYT  E++G++   L              F +   + RLR  +  
Sbjct  1    DGRIIYVNDAALRLLGYTREELLGKSITDL--------------FAEPEDSERLREALRE  46

Query  367  HRGEIQATIINYRKGGQPFMNLITMVPVRWNSPDYRFYVGFQVDLVE  413
             +   +  ++ YRK G+PF  L+++ P+R +  +    +    D+ E
Sbjct  47   GKAVREFEVVLYRKDGEPFPVLVSLAPIRDDGGELVGIIAILRDITE  93



Lambda      K        H        a         alpha
   0.316    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00021507

Length=867
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463873 pfam13426, PAS_9, PAS domain                               74.0    1e-16
CDD:425605 pfam00320, GATA, GATA zinc finger. This domain uses fo...  67.0    8e-15
CDD:430001 pfam08447, PAS_3, PAS fold. The PAS fold corresponds t...  63.9    4e-13


>CDD:463873 pfam13426, PAS_9, PAS domain.  
Length=93

 Score = 74.0 bits (182),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 52/107 (49%), Gaps = 15/107 (14%)

Query  308  DHPIIYVSEAFVRLTGYTEREIVGQNCRFLQDPSGVVQRGMPRKFVDQHTAFRLRSTIE-  366
            D  IIYV++A +RL GYT  E++G++   L              F +   + RLR  +  
Sbjct  1    DGRIIYVNDAALRLLGYTREELLGKSITDL--------------FAEPEDSERLREALRE  46

Query  367  HRGEIQATIINYRKGGQPFMNLITMVPVRWNSPDYRFYVGFQVDLVE  413
             +   +  ++ YRK G+PF  L+++ P+R +  +    +    D+ E
Sbjct  47   GKAVREFEVVLYRKDGEPFPVLVSLAPIRDDGGELVGIIAILRDITE  93


>CDD:425605 pfam00320, GATA, GATA zinc finger.  This domain uses four cysteine 
residues to coordinate a zinc ion. This domain binds to 
DNA. Two GATA zinc fingers are found in the GATA transcription 
factors. However there are several proteins which only 
contain a single copy of the domain.
Length=36

 Score = 67.0 bits (164),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 20/32 (63%), Positives = 24/32 (75%), Gaps = 0/32 (0%)

Query  823  CAMCQTRTTPEWRRGPSGNRDLCNSCGLRWAK  854
            C+ C T  TP WRRGP+GNR LCN+CGL + K
Sbjct  1    CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKK  32


>CDD:430001 pfam08447, PAS_3, PAS fold.  The PAS fold corresponds to the 
structural domain that has previously been defined as PAS and 
PAC motifs. The PAS fold appears in archaea, eubacteria and 
eukarya.
Length=89

 Score = 63.9 bits (156),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 3/84 (4%)

Query  502  LYISPSCRKVLGYDPNELIGK--TLSTICHPSDIGPVIRDLRSCTNSD-PVSVMYRVRTK  558
            +Y SP   ++LGY P EL+GK  +   + HP D   V   L        P S  YR+R K
Sbjct  2    IYWSPRFEEILGYTPEELLGKGESWLDLVHPDDRERVREALWEALKGGEPYSGEYRIRRK  61

Query  559  YSGYMWFESHGSWHIGDRGRQYLV  582
               Y W E+       + G+   V
Sbjct  62   DGEYRWVEARARPIRDENGKPVRV  85



Lambda      K        H        a         alpha
   0.316    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1108216808


Query= TCONS_00021509

Length=867
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463873 pfam13426, PAS_9, PAS domain                               74.0    1e-16
CDD:425605 pfam00320, GATA, GATA zinc finger. This domain uses fo...  67.0    8e-15
CDD:430001 pfam08447, PAS_3, PAS fold. The PAS fold corresponds t...  63.9    4e-13


>CDD:463873 pfam13426, PAS_9, PAS domain.  
Length=93

 Score = 74.0 bits (182),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 52/107 (49%), Gaps = 15/107 (14%)

Query  308  DHPIIYVSEAFVRLTGYTEREIVGQNCRFLQDPSGVVQRGMPRKFVDQHTAFRLRSTIE-  366
            D  IIYV++A +RL GYT  E++G++   L              F +   + RLR  +  
Sbjct  1    DGRIIYVNDAALRLLGYTREELLGKSITDL--------------FAEPEDSERLREALRE  46

Query  367  HRGEIQATIINYRKGGQPFMNLITMVPVRWNSPDYRFYVGFQVDLVE  413
             +   +  ++ YRK G+PF  L+++ P+R +  +    +    D+ E
Sbjct  47   GKAVREFEVVLYRKDGEPFPVLVSLAPIRDDGGELVGIIAILRDITE  93


>CDD:425605 pfam00320, GATA, GATA zinc finger.  This domain uses four cysteine 
residues to coordinate a zinc ion. This domain binds to 
DNA. Two GATA zinc fingers are found in the GATA transcription 
factors. However there are several proteins which only 
contain a single copy of the domain.
Length=36

 Score = 67.0 bits (164),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 20/32 (63%), Positives = 24/32 (75%), Gaps = 0/32 (0%)

Query  823  CAMCQTRTTPEWRRGPSGNRDLCNSCGLRWAK  854
            C+ C T  TP WRRGP+GNR LCN+CGL + K
Sbjct  1    CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKK  32


>CDD:430001 pfam08447, PAS_3, PAS fold.  The PAS fold corresponds to the 
structural domain that has previously been defined as PAS and 
PAC motifs. The PAS fold appears in archaea, eubacteria and 
eukarya.
Length=89

 Score = 63.9 bits (156),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 3/84 (4%)

Query  502  LYISPSCRKVLGYDPNELIGK--TLSTICHPSDIGPVIRDLRSCTNSD-PVSVMYRVRTK  558
            +Y SP   ++LGY P EL+GK  +   + HP D   V   L        P S  YR+R K
Sbjct  2    IYWSPRFEEILGYTPEELLGKGESWLDLVHPDDRERVREALWEALKGGEPYSGEYRIRRK  61

Query  559  YSGYMWFESHGSWHIGDRGRQYLV  582
               Y W E+       + G+   V
Sbjct  62   DGEYRWVEARARPIRDENGKPVRV  85



Lambda      K        H        a         alpha
   0.316    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1108216808


Query= TCONS_00021510

Length=851
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463873 pfam13426, PAS_9, PAS domain                               74.0    1e-16
CDD:425605 pfam00320, GATA, GATA zinc finger. This domain uses fo...  67.0    8e-15
CDD:430001 pfam08447, PAS_3, PAS fold. The PAS fold corresponds t...  63.9    4e-13


>CDD:463873 pfam13426, PAS_9, PAS domain.  
Length=93

 Score = 74.0 bits (182),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 52/107 (49%), Gaps = 15/107 (14%)

Query  292  DHPIIYVSEAFVRLTGYTEREIVGQNCRFLQDPSGVVQRGMPRKFVDQHTAFRLRSTIE-  350
            D  IIYV++A +RL GYT  E++G++   L              F +   + RLR  +  
Sbjct  1    DGRIIYVNDAALRLLGYTREELLGKSITDL--------------FAEPEDSERLREALRE  46

Query  351  HRGEIQATIINYRKGGQPFMNLITMVPVRWNSPDYRFYVGFQVDLVE  397
             +   +  ++ YRK G+PF  L+++ P+R +  +    +    D+ E
Sbjct  47   GKAVREFEVVLYRKDGEPFPVLVSLAPIRDDGGELVGIIAILRDITE  93


>CDD:425605 pfam00320, GATA, GATA zinc finger.  This domain uses four cysteine 
residues to coordinate a zinc ion. This domain binds to 
DNA. Two GATA zinc fingers are found in the GATA transcription 
factors. However there are several proteins which only 
contain a single copy of the domain.
Length=36

 Score = 67.0 bits (164),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 20/32 (63%), Positives = 24/32 (75%), Gaps = 0/32 (0%)

Query  807  CAMCQTRTTPEWRRGPSGNRDLCNSCGLRWAK  838
            C+ C T  TP WRRGP+GNR LCN+CGL + K
Sbjct  1    CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKK  32


>CDD:430001 pfam08447, PAS_3, PAS fold.  The PAS fold corresponds to the 
structural domain that has previously been defined as PAS and 
PAC motifs. The PAS fold appears in archaea, eubacteria and 
eukarya.
Length=89

 Score = 63.9 bits (156),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 3/84 (4%)

Query  486  LYISPSCRKVLGYDPNELIGK--TLSTICHPSDIGPVIRDLRSCTNSD-PVSVMYRVRTK  542
            +Y SP   ++LGY P EL+GK  +   + HP D   V   L        P S  YR+R K
Sbjct  2    IYWSPRFEEILGYTPEELLGKGESWLDLVHPDDRERVREALWEALKGGEPYSGEYRIRRK  61

Query  543  YSGYMWFESHGSWHIGDRGRQYLV  566
               Y W E+       + G+   V
Sbjct  62   DGEYRWVEARARPIRDENGKPVRV  85



Lambda      K        H        a         alpha
   0.316    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1085248584


Query= TCONS_00026596

Length=431


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00026597

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.150    0.553    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00021511

Length=390


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00021512

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:405318 pfam14612, Ino80_Iec3, IEC3 subunit of the Ino80 compl...  312     8e-108


>CDD:405318 pfam14612, Ino80_Iec3, IEC3 subunit of the Ino80 complex, chromatin 
re-modelling.  This is a family of fungal chromatin re-modelling 
proteins found in one of the chromatin-central complexes, 
Ino80. The function was identified in Schizosaccharomyces 
pombe but there is no orthologue in S. cerevisiae.
Length=231

 Score = 312 bits (802),  Expect = 8e-108, Method: Composition-based stats.
 Identities = 129/218 (59%), Positives = 156/218 (72%), Gaps = 4/218 (2%)

Query  42   FELGMKESESLIREELRIEDLSKRIQEQNDQLLEVLLEFNESLHIPADQRFDLSAPGDSS  101
            FE  M+ESESL REE RIEDLSKR+QEQNDQLL++LL+ N S HIP   R+DLS PGD  
Sbjct  14   FEEKMRESESLFREEQRIEDLSKRLQEQNDQLLDLLLDLNNSPHIPPSLRYDLSLPGDLL  73

Query  102  FLPTPE---RSPMYVDTATAKSILKDAKAQMDAGSMTLEAYRTLEDDIKRGNAFAPRMHY  158
             L  PE      +  D A A+  L++AKA++ AG +T + YR LE+ +KR  AFAP    
Sbjct  74   PLLPPEEAAIPALENDPAGARQKLQEAKAELAAGEITADDYRRLEESLKRSLAFAPVKSL  133

Query  159  TAL-QKVPHTAVPPLREDSSTNISLEEKLGYLTPEHETEYYLSMDAKLGDEAAALELSRI  217
             +L  KVPHT +PP   D      LEE LGYLTPEHE EY L++DAKLGD +A ++L R 
Sbjct  134  ASLLSKVPHTTLPPPLPDLEVGEDLEEPLGYLTPEHEDEYLLALDAKLGDPSAGMQLRRA  193

Query  218  PEKPSFAERERELALRNPVSVYNWLRRNQPHIFLQDHE  255
            PEKP+ AERERELALRNPVSVYNWLR+NQP +FLQD+E
Sbjct  194  PEKPTLAERERELALRNPVSVYNWLRKNQPQVFLQDNE  231



Lambda      K        H        a         alpha
   0.308    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00021513

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:405318 pfam14612, Ino80_Iec3, IEC3 subunit of the Ino80 compl...  206     2e-67


>CDD:405318 pfam14612, Ino80_Iec3, IEC3 subunit of the Ino80 complex, chromatin 
re-modelling.  This is a family of fungal chromatin re-modelling 
proteins found in one of the chromatin-central complexes, 
Ino80. The function was identified in Schizosaccharomyces 
pombe but there is no orthologue in S. cerevisiae.
Length=231

 Score = 206 bits (525),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 85/146 (58%), Positives = 106/146 (73%), Gaps = 1/146 (1%)

Query  1    MYVDTATAKSILKDAKAQMDAGSMTLEAYRTLEDDIKRGNAFAPRMHYTAL-QKVPHTAV  59
            +  D A A+  L++AKA++ AG +T + YR LE+ +KR  AFAP     +L  KVPHT +
Sbjct  86   LENDPAGARQKLQEAKAELAAGEITADDYRRLEESLKRSLAFAPVKSLASLLSKVPHTTL  145

Query  60   PPLREDSSTNISLEEKLGYLTPEHETEYYLSMDAKLGDEAAALELSRIPEKPSFAERERE  119
            PP   D      LEE LGYLTPEHE EY L++DAKLGD +A ++L R PEKP+ AERERE
Sbjct  146  PPPLPDLEVGEDLEEPLGYLTPEHEDEYLLALDAKLGDPSAGMQLRRAPEKPTLAERERE  205

Query  120  LALRNPVSVYNWLRRNQPHIFLQDHE  145
            LALRNPVSVYNWLR+NQP +FLQD+E
Sbjct  206  LALRNPVSVYNWLRKNQPQVFLQDNE  231



Lambda      K        H        a         alpha
   0.308    0.126    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00021514

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00026599

Length=390


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00021515

Length=390


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00021516

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461515 pfam05004, IFRD, Interferon-related developmental regu...  316     2e-107


>CDD:461515 pfam05004, IFRD, Interferon-related developmental regulator (IFRD). 
 Interferon-related developmental regulator (IFRD1) is 
the human homolog of the rat early response protein PC4 and 
its murine homolog TIS7. The exact function of IFRD1 is unknown 
but it has been shown that PC4 is necessary to muscle 
differentiation and that it might have a role in signal transduction. 
This family also contains IFRD2 and its murine equivalent 
SKMc15 which are highly expressed soon after gastrulation 
and in the hepatic primordium, suggesting an involvement 
in early hematopoiesis.
Length=297

 Score = 316 bits (813),  Expect = 2e-107, Method: Composition-based stats.
 Identities = 122/305 (40%), Positives = 164/305 (54%), Gaps = 34/305 (11%)

Query  15   DAGTNANWPEELEDVVEDILDRKRSSVLAREEAYAAFCRLAKSHYIEDRIRTRVLDLVSA  74
            +     +W E+L+D ++++      S   RE A A+   L  SHY+ + +  R   L+ A
Sbjct  18   EEEAQEDWEEKLDDAIDELT---EKSAQTREAALASLRHLLTSHYLPEFVEERRATLLDA  74

Query  75   FAKSIKFESSVRETTLALRALSLLTIT----AFDNTIYENVEPLLTRTIRDSTSPVIKAA  130
              KSIK  SS  E  LA RA++LL IT         IYE ++P+L RTI DS+S   +AA
Sbjct  75   LEKSIKKGSSE-EQALAARAIALLCITLGAGDPSEEIYEELKPVLKRTINDSSSISARAA  133

Query  131  AIHCLGVCTSFGGAGEDSIVDQMTFFLDIAASDGHSIDAADDG---ATVTAALQEWGYLA  187
            AIH LG+ T  GGA E+ I + M F L+I +SDG SIDA D     A VTAAL  WG L 
Sbjct  134  AIHALGLLTFVGGADEEEIEESMEFLLEIFSSDGGSIDANDSASKPALVTAALSAWGLLL  193

Query  188  TEIEDLE--AESEEAVQIFMDQLNSNDPARQIAAGENIALLYEKSYTPQEDDDDEDEEVK  245
            T + DLE   E E A++   + L+S+D   +IAAGENIALL+E   T             
Sbjct  194  TLLPDLELKEELESALEALSELLDSSDVEVRIAAGENIALLFELGRTE------------  241

Query  246  SDEEEFMGARDRDGPKLVKRYNAYHNTHELEQQLQSLATVHKKHISKRDKKNLHSNFASI  305
                           +  KRY+ Y +T EL +QL+ LAT   K+ +K+D+K   S F  I
Sbjct  242  ---------DREFDEEEGKRYDLYEDTDELCEQLRELATDSNKYRAKKDRKTQRSVFRDI  292

Query  306  LTTVE  310
            LTTVE
Sbjct  293  LTTVE  297



Lambda      K        H        a         alpha
   0.316    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 507942834


Query= TCONS_00026601

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461515 pfam05004, IFRD, Interferon-related developmental regu...  317     1e-106


>CDD:461515 pfam05004, IFRD, Interferon-related developmental regulator (IFRD). 
 Interferon-related developmental regulator (IFRD1) is 
the human homolog of the rat early response protein PC4 and 
its murine homolog TIS7. The exact function of IFRD1 is unknown 
but it has been shown that PC4 is necessary to muscle 
differentiation and that it might have a role in signal transduction. 
This family also contains IFRD2 and its murine equivalent 
SKMc15 which are highly expressed soon after gastrulation 
and in the hepatic primordium, suggesting an involvement 
in early hematopoiesis.
Length=297

 Score = 317 bits (815),  Expect = 1e-106, Method: Composition-based stats.
 Identities = 122/312 (39%), Positives = 166/312 (53%), Gaps = 34/312 (11%)

Query  70   DVGDIIPDAGTNANWPEELEDVVEDILDRKRSSVLAREEAYAAFCRLAKSHYIEDRIRTR  129
               + + +     +W E+L+D ++++      S   RE A A+   L  SHY+ + +  R
Sbjct  11   SAEEGVDEEEAQEDWEEKLDDAIDELT---EKSAQTREAALASLRHLLTSHYLPEFVEER  67

Query  130  VLDLVSAFAKSIKFESSVRETTLALRALSLLTIT----AFDNTIYENVEPLLTRTIRDST  185
               L+ A  KSIK  SS  E  LA RA++LL IT         IYE ++P+L RTI DS+
Sbjct  68   RATLLDALEKSIKKGSSE-EQALAARAIALLCITLGAGDPSEEIYEELKPVLKRTINDSS  126

Query  186  SPVIKAAAIHCLGVCTSFGGAGEDSIVDQMTFFLDIAASDGHSIDAADDG---ATVTAAL  242
            S   +AAAIH LG+ T  GGA E+ I + M F L+I +SDG SIDA D     A VTAAL
Sbjct  127  SISARAAAIHALGLLTFVGGADEEEIEESMEFLLEIFSSDGGSIDANDSASKPALVTAAL  186

Query  243  QEWGYLATEIEDLE--AESEEAVQIFMDQLNSNDPARQIAAGENIALLYEKSYTPQEDDD  300
              WG L T + DLE   E E A++   + L+S+D   +IAAGENIALL+E   T      
Sbjct  187  SAWGLLLTLLPDLELKEELESALEALSELLDSSDVEVRIAAGENIALLFELGRTE-----  241

Query  301  DEDEEVKSDEEEFMGARDRDGPKLVKRYNAYHNTHELEQQLQSLATVHKKHISKRDKKNL  360
                                  +  KRY+ Y +T EL +QL+ LAT   K+ +K+D+K  
Sbjct  242  ----------------DREFDEEEGKRYDLYEDTDELCEQLRELATDSNKYRAKKDRKTQ  285

Query  361  HSNFASILTTVE  372
             S F  ILTTVE
Sbjct  286  RSVFRDILTTVE  297



Lambda      K        H        a         alpha
   0.314    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00026602

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461515 pfam05004, IFRD, Interferon-related developmental regu...  321     1e-108


>CDD:461515 pfam05004, IFRD, Interferon-related developmental regulator (IFRD). 
 Interferon-related developmental regulator (IFRD1) is 
the human homolog of the rat early response protein PC4 and 
its murine homolog TIS7. The exact function of IFRD1 is unknown 
but it has been shown that PC4 is necessary to muscle 
differentiation and that it might have a role in signal transduction. 
This family also contains IFRD2 and its murine equivalent 
SKMc15 which are highly expressed soon after gastrulation 
and in the hepatic primordium, suggesting an involvement 
in early hematopoiesis.
Length=297

 Score = 321 bits (826),  Expect = 1e-108, Method: Composition-based stats.
 Identities = 123/311 (40%), Positives = 168/311 (54%), Gaps = 34/311 (11%)

Query  49   SDEEDEDAGTNANWPEELEDVVEDILDRKRSSVLAREEAYAAFCRLAKSHYIEDRIRTRV  108
            ++E  ++     +W E+L+D ++++      S   RE A A+   L  SHY+ + +  R 
Sbjct  12   AEEGVDEEEAQEDWEEKLDDAIDELT---EKSAQTREAALASLRHLLTSHYLPEFVEERR  68

Query  109  LDLVSAFAKSIKFESSVRETTLALRALSLLTIT----AFDNTIYENVEPLLTRTIRDSTS  164
              L+ A  KSIK  SS  E  LA RA++LL IT         IYE ++P+L RTI DS+S
Sbjct  69   ATLLDALEKSIKKGSSE-EQALAARAIALLCITLGAGDPSEEIYEELKPVLKRTINDSSS  127

Query  165  PVIKAAAIHCLGVCTSFGGAGEDSIVDQMTFFLDIAASDGHSIDAADDG---ATVTAALQ  221
               +AAAIH LG+ T  GGA E+ I + M F L+I +SDG SIDA D     A VTAAL 
Sbjct  128  ISARAAAIHALGLLTFVGGADEEEIEESMEFLLEIFSSDGGSIDANDSASKPALVTAALS  187

Query  222  EWGYLATEIEDLE--AESEEAVQIFMDQLNSNDPARQIAAGENIALLYEKSYTPQEDDDD  279
             WG L T + DLE   E E A++   + L+S+D   +IAAGENIALL+E   T       
Sbjct  188  AWGLLLTLLPDLELKEELESALEALSELLDSSDVEVRIAAGENIALLFELGRTE------  241

Query  280  EDEEVKSDEEEFMGARDRDGPKLVKRYNAYHNTHELEQQLQSLATVHKKHISKRDKKNLH  339
                                 +  KRY+ Y +T EL +QL+ LAT   K+ +K+D+K   
Sbjct  242  ---------------DREFDEEEGKRYDLYEDTDELCEQLRELATDSNKYRAKKDRKTQR  286

Query  340  SNFASILTTVE  350
            S F  ILTTVE
Sbjct  287  SVFRDILTTVE  297



Lambda      K        H        a         alpha
   0.314    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00021517

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461515 pfam05004, IFRD, Interferon-related developmental regu...  317     9e-107


>CDD:461515 pfam05004, IFRD, Interferon-related developmental regulator (IFRD). 
 Interferon-related developmental regulator (IFRD1) is 
the human homolog of the rat early response protein PC4 and 
its murine homolog TIS7. The exact function of IFRD1 is unknown 
but it has been shown that PC4 is necessary to muscle 
differentiation and that it might have a role in signal transduction. 
This family also contains IFRD2 and its murine equivalent 
SKMc15 which are highly expressed soon after gastrulation 
and in the hepatic primordium, suggesting an involvement 
in early hematopoiesis.
Length=297

 Score = 317 bits (815),  Expect = 9e-107, Method: Composition-based stats.
 Identities = 126/324 (39%), Positives = 171/324 (53%), Gaps = 36/324 (11%)

Query  58   SDDTAYSLGSLDDVGDIIPDAGTNANWPEELEDVVEDILDRKRSSVLAREEAYAAFCRLA  117
            S  ++ S  S  + G    +     +W E+L+D ++++      S   RE A A+   L 
Sbjct  1    SVSSSSSESSSAEEGV--DEEEAQEDWEEKLDDAIDELT---EKSAQTREAALASLRHLL  55

Query  118  KSHYIEDRIRTRVLDLVSAFAKSIKFESSVRETTLALRALSLLTIT----AFDNTIYENV  173
             SHY+ + +  R   L+ A  KSIK  SS  E  LA RA++LL IT         IYE +
Sbjct  56   TSHYLPEFVEERRATLLDALEKSIKKGSSE-EQALAARAIALLCITLGAGDPSEEIYEEL  114

Query  174  EPLLTRTIRDSTSPVIKAAAIHCLGVCTSFGGAGEDSIVDQMTFFLDIAASDGHSIDAAD  233
            +P+L RTI DS+S   +AAAIH LG+ T  GGA E+ I + M F L+I +SDG SIDA D
Sbjct  115  KPVLKRTINDSSSISARAAAIHALGLLTFVGGADEEEIEESMEFLLEIFSSDGGSIDAND  174

Query  234  DG---ATVTAALQEWGYLATEIEDLE--AESEEAVQIFMDQLNSNDPARQIAAGENIALL  288
                 A VTAAL  WG L T + DLE   E E A++   + L+S+D   +IAAGENIALL
Sbjct  175  SASKPALVTAALSAWGLLLTLLPDLELKEELESALEALSELLDSSDVEVRIAAGENIALL  234

Query  289  YEKSYTPQEDDDDEDEEVKSDEEEFMGARDRDGPKLVKRYNAYHNTHELEQQLQSLATVH  348
            +E   T                            +  KRY+ Y +T EL +QL+ LAT  
Sbjct  235  FELGRTE---------------------DREFDEEEGKRYDLYEDTDELCEQLRELATDS  273

Query  349  KKHISKRDKKNLHSNFASILTTVE  372
             K+ +K+D+K   S F  ILTTVE
Sbjct  274  NKYRAKKDRKTQRSVFRDILTTVE  297



Lambda      K        H        a         alpha
   0.314    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00021518

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  160     1e-46
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            127     6e-34


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 160 bits (407),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 68/262 (26%), Positives = 109/262 (42%), Gaps = 52/262 (20%)

Query  67   LITLKELGAGNGGTVSKVMHASTKVVMARKIIRVD-AKENVRKQILRELQVGHDCNSPHI  125
               L++LG+G+ GTV K  H  T  ++A K I+ +  K+   K ILRE+++    N P+I
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  126  VTFYGAFQNEARDIVLCMEYMDCGSLDRISKDFGPVRVDVLGKITESVLAGLVYLYEAHR  185
            V  Y AF+++   + L +EY++ GSL  +  + G         I + +L GL        
Sbjct  61   VRLYDAFEDKDN-LYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL--------  111

Query  186  IMHRDIKPSNILVNSRGNIKLCDFGVATETVNSIADTFVGTSTYMAPERIQGGAYTVRSD  245
                  +                         S   TFVGT  YMAPE + G  Y  + D
Sbjct  112  ------ESG-----------------------SSLTTFVGTPWYMAPEVLGGNPYGPKVD  142

Query  246  VWSVGLTVMELAVGRFPFDTSDSSAGDRASAGPMGILDLLQQIVHEPAPKLPKSDAFPPI  305
            VWS+G  + EL  G+ PF   + +             ++ + I+ +P             
Sbjct  143  VWSLGCILYELLTGKPPFPGINGN-------------EIYELIIDQPYAFPELPSNLSEE  189

Query  306  LHEFVAKCLLKKPEERPTPREL  327
              + + K L K P +R T  + 
Sbjct  190  AKDLLKKLLKKDPSKRLTATQA  211


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 127 bits (322),  Expect = 6e-34, Method: Composition-based stats.
 Identities = 71/277 (26%), Positives = 121/277 (44%), Gaps = 33/277 (12%)

Query  67   LITLKELGAGNGGTVS----KVMHASTKVVMARKIIRVDAKENVRKQILRELQVGHDCNS  122
            L   ++LG G  G V     K    +TK+ +A K ++  A E  R+  L E  +    + 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKLDH  60

Query  123  PHIVTFYGAFQNEARDIVLCMEYMDCGSLD---RISKDFGPVRVDVLGKITESVLAGLVY  179
            P+IV   G         ++  EYM  G L    R  K    + +  L  +   +  G+ Y
Sbjct  61   PNIVKLLGVCTQGEPLYIV-TEYMPGGDLLDFLRKHK--RKLTLKDLLSMALQIAKGMEY  117

Query  180  LYEAHRIMHRDIKPSNILVNSRGNIKLCDFGVATETVNSIADTFVGTST-----YMAPER  234
            L E+   +HRD+   N LV+    +K+ DFG++   +                 +MAPE 
Sbjct  118  L-ESKNFVHRDLAARNCLVSENLVVKISDFGLSR-DIYDDDYYRKRGGGKLPIKWMAPES  175

Query  235  IQGGAYTVRSDVWSVGLTVMELA-VGRFPFDTSDSSAGDRASAGPMGILDLLQQIVHEPA  293
            ++ G +T +SDVWS G+ + E+  +G  P+               M   ++L+ +     
Sbjct  176  LKDGKFTSKSDVWSFGVLLWEIFTLGEQPYP-------------GMSNEEVLEFLEDG--  220

Query  294  PKLPKSDAFPPILHEFVAKCLLKKPEERPTPRELYDK  330
             +LP+ +  P  L++ + +C    PE+RPT  EL + 
Sbjct  221  YRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.314    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00021519

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  160     2e-48
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            126     4e-35


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 160 bits (407),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 68/262 (26%), Positives = 109/262 (42%), Gaps = 52/262 (20%)

Query  67   LITLKELGAGNGGTVSKVMHASTKVVMARKIIRVD-AKENVRKQILRELQVGHDCNSPHI  125
               L++LG+G+ GTV K  H  T  ++A K I+ +  K+   K ILRE+++    N P+I
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  126  VTFYGAFQNEARDIVLCMEYMDCGSLDRISKDFGPVRVDVLGKITESVLAGLVYLYEAHR  185
            V  Y AF+++   + L +EY++ GSL  +  + G         I + +L GL        
Sbjct  61   VRLYDAFEDKDN-LYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL--------  111

Query  186  IMHRDIKPSNILVNSRGNIKLCDFGVATETVNSIADTFVGTSTYMAPERIQGGAYTVRSD  245
                  +                         S   TFVGT  YMAPE + G  Y  + D
Sbjct  112  ------ESG-----------------------SSLTTFVGTPWYMAPEVLGGNPYGPKVD  142

Query  246  VWSVGLTVMELAVGRFPFDTSDSSAGDRASAGPMGILDLLQQIVHEPAPKLPKSDAFPPI  305
            VWS+G  + EL  G+ PF   + +             ++ + I+ +P             
Sbjct  143  VWSLGCILYELLTGKPPFPGINGN-------------EIYELIIDQPYAFPELPSNLSEE  189

Query  306  LHEFVAKCLLKKPEERPTPREL  327
              + + K L K P +R T  + 
Sbjct  190  AKDLLKKLLKKDPSKRLTATQA  211


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 126 bits (320),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 71/274 (26%), Positives = 120/274 (44%), Gaps = 33/274 (12%)

Query  67   LITLKELGAGNGGTVS----KVMHASTKVVMARKIIRVDAKENVRKQILRELQVGHDCNS  122
            L   ++LG G  G V     K    +TK+ +A K ++  A E  R+  L E  +    + 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKLDH  60

Query  123  PHIVTFYGAFQNEARDIVLCMEYMDCGSLD---RISKDFGPVRVDVLGKITESVLAGLVY  179
            P+IV   G         ++  EYM  G L    R  K    + +  L  +   +  G+ Y
Sbjct  61   PNIVKLLGVCTQGEPLYIV-TEYMPGGDLLDFLRKHK--RKLTLKDLLSMALQIAKGMEY  117

Query  180  LYEAHRIMHRDIKPSNILVNSRGNIKLCDFGVATETVNSIADTFVGTST-----YMAPER  234
            L E+   +HRD+   N LV+    +K+ DFG++   +                 +MAPE 
Sbjct  118  L-ESKNFVHRDLAARNCLVSENLVVKISDFGLSR-DIYDDDYYRKRGGGKLPIKWMAPES  175

Query  235  IQGGAYTVRSDVWSVGLTVMELA-VGRFPFDTSDSSAGDRASAGPMGILDLLQQIVHEPA  293
            ++ G +T +SDVWS G+ + E+  +G  P+               M   ++L+ +     
Sbjct  176  LKDGKFTSKSDVWSFGVLLWEIFTLGEQPYP-------------GMSNEEVLEFLEDG--  220

Query  294  PKLPKSDAFPPILHEFVAKCLLKKPEERPTPREL  327
             +LP+ +  P  L++ + +C    PE+RPT  EL
Sbjct  221  YRLPQPENCPDELYDLMKQCWAYDPEDRPTFSEL  254



Lambda      K        H        a         alpha
   0.319    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00026603

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  160     1e-46
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            127     6e-34


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 160 bits (407),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 68/262 (26%), Positives = 109/262 (42%), Gaps = 52/262 (20%)

Query  67   LITLKELGAGNGGTVSKVMHASTKVVMARKIIRVD-AKENVRKQILRELQVGHDCNSPHI  125
               L++LG+G+ GTV K  H  T  ++A K I+ +  K+   K ILRE+++    N P+I
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  126  VTFYGAFQNEARDIVLCMEYMDCGSLDRISKDFGPVRVDVLGKITESVLAGLVYLYEAHR  185
            V  Y AF+++   + L +EY++ GSL  +  + G         I + +L GL        
Sbjct  61   VRLYDAFEDKDN-LYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL--------  111

Query  186  IMHRDIKPSNILVNSRGNIKLCDFGVATETVNSIADTFVGTSTYMAPERIQGGAYTVRSD  245
                  +                         S   TFVGT  YMAPE + G  Y  + D
Sbjct  112  ------ESG-----------------------SSLTTFVGTPWYMAPEVLGGNPYGPKVD  142

Query  246  VWSVGLTVMELAVGRFPFDTSDSSAGDRASAGPMGILDLLQQIVHEPAPKLPKSDAFPPI  305
            VWS+G  + EL  G+ PF   + +             ++ + I+ +P             
Sbjct  143  VWSLGCILYELLTGKPPFPGINGN-------------EIYELIIDQPYAFPELPSNLSEE  189

Query  306  LHEFVAKCLLKKPEERPTPREL  327
              + + K L K P +R T  + 
Sbjct  190  AKDLLKKLLKKDPSKRLTATQA  211


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 127 bits (322),  Expect = 6e-34, Method: Composition-based stats.
 Identities = 71/277 (26%), Positives = 121/277 (44%), Gaps = 33/277 (12%)

Query  67   LITLKELGAGNGGTVS----KVMHASTKVVMARKIIRVDAKENVRKQILRELQVGHDCNS  122
            L   ++LG G  G V     K    +TK+ +A K ++  A E  R+  L E  +    + 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKLDH  60

Query  123  PHIVTFYGAFQNEARDIVLCMEYMDCGSLD---RISKDFGPVRVDVLGKITESVLAGLVY  179
            P+IV   G         ++  EYM  G L    R  K    + +  L  +   +  G+ Y
Sbjct  61   PNIVKLLGVCTQGEPLYIV-TEYMPGGDLLDFLRKHK--RKLTLKDLLSMALQIAKGMEY  117

Query  180  LYEAHRIMHRDIKPSNILVNSRGNIKLCDFGVATETVNSIADTFVGTST-----YMAPER  234
            L E+   +HRD+   N LV+    +K+ DFG++   +                 +MAPE 
Sbjct  118  L-ESKNFVHRDLAARNCLVSENLVVKISDFGLSR-DIYDDDYYRKRGGGKLPIKWMAPES  175

Query  235  IQGGAYTVRSDVWSVGLTVMELA-VGRFPFDTSDSSAGDRASAGPMGILDLLQQIVHEPA  293
            ++ G +T +SDVWS G+ + E+  +G  P+               M   ++L+ +     
Sbjct  176  LKDGKFTSKSDVWSFGVLLWEIFTLGEQPYP-------------GMSNEEVLEFLEDG--  220

Query  294  PKLPKSDAFPPILHEFVAKCLLKKPEERPTPRELYDK  330
             +LP+ +  P  L++ + +C    PE+RPT  EL + 
Sbjct  221  YRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.314    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00021520

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  95.4    3e-25
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            61.7    2e-12


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 95.4 bits (238),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 2/112 (2%)

Query  67   LITLKELGAGNGGTVSKVMHASTKVVMARKIIRVD-AKENVRKQILRELQVGHDCNSPHI  125
               L++LG+G+ GTV K  H  T  ++A K I+ +  K+   K ILRE+++    N P+I
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  126  VTFYGAFQNEARDIVLCMEYMDCGSLDRISKDFGPVRVDVLGKITESVLAGL  177
            V  Y AF+++   + L +EY++ GSL  +  + G         I + +L GL
Sbjct  61   VRLYDAFEDKDN-LYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL  111


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 61.7 bits (151),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 35/132 (27%), Positives = 56/132 (42%), Gaps = 11/132 (8%)

Query  67   LITLKELGAGNGGTVS----KVMHASTKVVMARKIIRVDAKENVRKQILRELQVGHDCNS  122
            L   ++LG G  G V     K    +TK+ +A K ++  A E  R+  L E  +    + 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKLDH  60

Query  123  PHIVTFYGAFQNEARDIVLCMEYMDCGSLD---RISKDFGPVRVDVLGKITESVLAGLVY  179
            P+IV   G         ++  EYM  G L    R  K    + +  L  +   +  G+ Y
Sbjct  61   PNIVKLLGVCTQGEPLYIV-TEYMPGGDLLDFLRKHK--RKLTLKDLLSMALQIAKGMEY  117

Query  180  LYEAHRIMHRDI  191
            L E+   +HRD+
Sbjct  118  L-ESKNFVHRDL  128



Lambda      K        H        a         alpha
   0.319    0.137    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00021521

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            98.3    4e-24
CDD:459660 pfam00069, Pkinase, Protein kinase domain                  96.2    1e-23


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 98.3 bits (246),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 51/197 (26%), Positives = 88/197 (45%), Gaps = 28/197 (14%)

Query  1    MEYMDCGSLD---RISKDFGPVRVDVLGKITESVLAGLVYLYEAHRIMHRDIKPSNILVN  57
             EYM  G L    R  K    + +  L  +   +  G+ YL E+   +HRD+   N LV+
Sbjct  80   TEYMPGGDLLDFLRKHK--RKLTLKDLLSMALQIAKGMEYL-ESKNFVHRDLAARNCLVS  136

Query  58   SRGNIKLCDFGVATETVNSIADTFVGTST-----YMAPERIQGGAYTVRSDVWSVGLTVM  112
                +K+ DFG++   +                 +MAPE ++ G +T +SDVWS G+ + 
Sbjct  137  ENLVVKISDFGLSR-DIYDDDYYRKRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLW  195

Query  113  ELA-VGRFPFDTSDSSAGDRASAGPMGILDLLQQIVHEPAPKLPKSDAFPPILHEFVAKC  171
            E+  +G  P+               M   ++L+ +      +LP+ +  P  L++ + +C
Sbjct  196  EIFTLGEQPYP-------------GMSNEEVLEFLEDG--YRLPQPENCPDELYDLMKQC  240

Query  172  LLKKPEERPTPRELYDK  188
                PE+RPT  EL + 
Sbjct  241  WAYDPEDRPTFSELVED  257


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 96.2 bits (240),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 50/185 (27%)

Query  1    MEYMDCGSLDRISKDFGPVRVDVLGKITESVLAGLVYLYEAHRIMHRDIKPSNILVNSRG  60
            +EY++ GSL  +  + G         I + +L GL              +          
Sbjct  77   LEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL--------------ESG--------  114

Query  61   NIKLCDFGVATETVNSIADTFVGTSTYMAPERIQGGAYTVRSDVWSVGLTVMELAVGRFP  120
                           S   TFVGT  YMAPE + G  Y  + DVWS+G  + EL  G+ P
Sbjct  115  ---------------SSLTTFVGTPWYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPP  159

Query  121  FDTSDSSAGDRASAGPMGILDLLQQIVHEPAPKLPKSDAFPPILHEFVAKCLLKKPEERP  180
            F   + +             ++ + I+ +P               + + K L K P +R 
Sbjct  160  FPGINGN-------------EIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSKRL  206

Query  181  TPREL  185
            T  + 
Sbjct  207  TATQA  211



Lambda      K        H        a         alpha
   0.314    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00026604

Length=2080
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463732 pfam12859, ANAPC1, Anaphase-promoting complex subunit ...  379     4e-120


>CDD:463732 pfam12859, ANAPC1, Anaphase-promoting complex subunit 1.  Apc1 
is the largest of the subunits of the anaphase-promoting complex 
or cyclosome. The anaphase-promoting complex is a multiprotein 
subunit E3 ubiquitin ligase complex that controls 
segregation of chromosomes and exit from mitosis in eukaryotes. 
Infection of human fibroblasts with human cytomegalovirus 
(HCMV) leads to cell cycle dysregulation, which is associated 
with the inactivation of the anaphase-promoting complex.
Length=295

 Score = 379 bits (975),  Expect = 4e-120, Method: Composition-based stats.
 Identities = 163/315 (52%), Positives = 203/315 (64%), Gaps = 24/315 (8%)

Query  153  ALVVILKSQAHIFFLHGNSHVIPLPFEVDSVFATPRGLLFQRKMQEDD--TSIYPMAPPN  210
            ALVV LK+QAHI+FL G SHV+PLPFEV+S F  PRGLL QRK++ED+  +  +P APPN
Sbjct  1    ALVVFLKTQAHIYFLSGESHVVPLPFEVESAFPAPRGLLLQRKLEEDERSSLKFPAAPPN  60

Query  211  SFISSFLTTDFRASESLELPSGKVKRPSLTISPAQNTALN-CRATKTANLPRVFSLIDPH  269
            SF+SS  +   R+ +SL    G  +R SLT+S       +       ++LPR+FSL DP 
Sbjct  61   SFVSSQSSPLDRSRKSL----GNPRRSSLTLSSTLGDMWDPPPEDSDSDLPRLFSLTDPL  116

Query  270  SEMGLVVT-KQSSRWLQRSINSKPSGLDALDPADEIVYVSPVNELLGSSRALSKSPLTLV  328
            SE+GLVVT  QSSR      +S     + LDPA+EI+YVS ++E    S   +  PL LV
Sbjct  117  SELGLVVTSSQSSRSSSPRRDS-SPQPEFLDPAEEILYVSDLDE----STIWTSDPLPLV  171

Query  329  VTVNLNTGLYTLWTARYREDETGPSSKKQRRRDTGGTRSKRRSSHFSMATGATTPAARPS  388
            VT+N  T  YT+W A Y E E+  SS K+R+      RS+RRSS   MATGATTP ARPS
Sbjct  172  VTLNRETSQYTIWRAEYLESESESSSSKKRK------RSRRRSSFMGMATGATTPVARPS  225

Query  389  AARESFGPRGDNWNASGFSHSQYSVDGRPDEDDLASRLGQDFGDLGVPSKTSRRVSSMLA  448
              RESFGP       S  SHS        DE+DLAS+L  DF D+GVP ++SRRVSS+LA
Sbjct  226  NLRESFGPLSGKRPRSSESHS-----DEKDEEDLASQLDPDFDDIGVPRRSSRRVSSLLA  280

Query  449  RTDLASSQDRIAFSD  463
            R DLA+SQDR AFSD
Sbjct  281  RADLATSQDRSAFSD  295



Lambda      K        H        a         alpha
   0.318    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2607700594


Query= TCONS_00021522

Length=2080
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463732 pfam12859, ANAPC1, Anaphase-promoting complex subunit ...  379     4e-120


>CDD:463732 pfam12859, ANAPC1, Anaphase-promoting complex subunit 1.  Apc1 
is the largest of the subunits of the anaphase-promoting complex 
or cyclosome. The anaphase-promoting complex is a multiprotein 
subunit E3 ubiquitin ligase complex that controls 
segregation of chromosomes and exit from mitosis in eukaryotes. 
Infection of human fibroblasts with human cytomegalovirus 
(HCMV) leads to cell cycle dysregulation, which is associated 
with the inactivation of the anaphase-promoting complex.
Length=295

 Score = 379 bits (975),  Expect = 4e-120, Method: Composition-based stats.
 Identities = 163/315 (52%), Positives = 203/315 (64%), Gaps = 24/315 (8%)

Query  153  ALVVILKSQAHIFFLHGNSHVIPLPFEVDSVFATPRGLLFQRKMQEDD--TSIYPMAPPN  210
            ALVV LK+QAHI+FL G SHV+PLPFEV+S F  PRGLL QRK++ED+  +  +P APPN
Sbjct  1    ALVVFLKTQAHIYFLSGESHVVPLPFEVESAFPAPRGLLLQRKLEEDERSSLKFPAAPPN  60

Query  211  SFISSFLTTDFRASESLELPSGKVKRPSLTISPAQNTALN-CRATKTANLPRVFSLIDPH  269
            SF+SS  +   R+ +SL    G  +R SLT+S       +       ++LPR+FSL DP 
Sbjct  61   SFVSSQSSPLDRSRKSL----GNPRRSSLTLSSTLGDMWDPPPEDSDSDLPRLFSLTDPL  116

Query  270  SEMGLVVT-KQSSRWLQRSINSKPSGLDALDPADEIVYVSPVNELLGSSRALSKSPLTLV  328
            SE+GLVVT  QSSR      +S     + LDPA+EI+YVS ++E    S   +  PL LV
Sbjct  117  SELGLVVTSSQSSRSSSPRRDS-SPQPEFLDPAEEILYVSDLDE----STIWTSDPLPLV  171

Query  329  VTVNLNTGLYTLWTARYREDETGPSSKKQRRRDTGGTRSKRRSSHFSMATGATTPAARPS  388
            VT+N  T  YT+W A Y E E+  SS K+R+      RS+RRSS   MATGATTP ARPS
Sbjct  172  VTLNRETSQYTIWRAEYLESESESSSSKKRK------RSRRRSSFMGMATGATTPVARPS  225

Query  389  AARESFGPRGDNWNASGFSHSQYSVDGRPDEDDLASRLGQDFGDLGVPSKTSRRVSSMLA  448
              RESFGP       S  SHS        DE+DLAS+L  DF D+GVP ++SRRVSS+LA
Sbjct  226  NLRESFGPLSGKRPRSSESHS-----DEKDEEDLASQLDPDFDDIGVPRRSSRRVSSLLA  280

Query  449  RTDLASSQDRIAFSD  463
            R DLA+SQDR AFSD
Sbjct  281  RADLATSQDRSAFSD  295



Lambda      K        H        a         alpha
   0.318    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2607700594


Query= TCONS_00026605

Length=1271


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1614751800


Query= TCONS_00021523

Length=651


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 822932820


Query= TCONS_00021525

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464015 pfam13880, Acetyltransf_13, ESCO1/2 acetyl-transferase     127     6e-37
CDD:464013 pfam13878, zf-C2H2_3, zinc-finger of acetyl-transferas...  65.3    2e-14


>CDD:464015 pfam13880, Acetyltransf_13, ESCO1/2 acetyl-transferase.  
Length=69

 Score = 127 bits (323),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 39/70 (56%), Positives = 48/70 (69%), Gaps = 1/70 (1%)

Query  374  HPAIVGISRIWTSGSSRRRGIAMDLLDCVVTNFIYGMEIPKEQVAFSQPTESGKRLAQAF  433
             PA  GISRIW S S RR+GIA  LLD   +NFIYG  + K+++AFSQPTESGK  A+ +
Sbjct  1    VPAKCGISRIWVSPSHRRKGIATRLLDAARSNFIYGYILEKDEIAFSQPTESGKAFARKY  60

Query  434  FGPGVQWHVY  443
            FG    + VY
Sbjct  61   FG-TDDFLVY  69


>CDD:464013 pfam13878, zf-C2H2_3, zinc-finger of acetyl-transferase ESCO. 
 
Length=40

 Score = 65.3 bits (160),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 17/40 (43%), Positives = 21/40 (53%), Gaps = 2/40 (5%)

Query  197  QMQIDLGHGVRK--TCATCGMEYVPSNAEDAALHKKFHDM  234
            Q+ +DLG        C  CGM Y P + ED  LHKK+H  
Sbjct  1    QLILDLGQKSFGATQCKECGMVYNPGSPEDEKLHKKYHAR  40



Lambda      K        H        a         alpha
   0.314    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00026607

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0855    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00026606

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00026609

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00026608

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00026610

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00021524

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00021526

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00026611

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00021527

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00021529

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00021528

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00021530

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00021531

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00021532

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00021534

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460980 pfam03587, EMG1, EMG1/NEP1 methyltransferase. Members ...  314     2e-110


>CDD:460980 pfam03587, EMG1, EMG1/NEP1 methyltransferase.  Members of this 
family are essential for 40S ribosomal biogenesis. The structure 
of EMG1 has revealed that it is a novel member of the 
superfamily of alpha/beta knot fold methyltransferases.
Length=205

 Score = 314 bits (808),  Expect = 2e-110, Method: Composition-based stats.
 Identities = 113/209 (54%), Positives = 135/209 (65%), Gaps = 6/209 (3%)

Query  47   VVLSHASLETYRASHGGRNGSGRDEKYSLLNSDEHIGVMRKMNRDISEARPDITHQCLLT  106
            VVL  ASLE        R G  +   Y LL+SD+H   M+K+ RD    RPDI HQCLL 
Sbjct  1    VVLEEASLELVPVEIRSRRG--KKPSYELLDSDDHYHAMKKLKRDPKRGRPDIVHQCLLA  58

Query  107  LLDSPINKAGKLQIYIHTAKGVLIEVNPSVRIPRTFKRFAGLMVQLLHRLSIRSTNSQEK  166
            LLDSP+NKAG LQ+YIHT  GVLIEVNP  RIPRT+KRFAGLM QLLH+ SIR+   +E 
Sbjct  59   LLDSPLNKAGLLQVYIHTEDGVLIEVNPETRIPRTYKRFAGLMEQLLHKGSIRAVEGEEP  118

Query  167  LLKVIKNPITDHLPPNCRKVTLSYEAPVVRVKDYIDSLGPKESICIFVGAMAKGQDDFAD  226
            LLKVIKNP+TDHLPP  +K+ LS     V   + + +L   E +   +GA A G  DF+D
Sbjct  119  LLKVIKNPLTDHLPPGSKKILLSESGEKVVPSELLAALALDEPVVFVIGAFAHG--DFSD  176

Query  227  SFK--DDTISISNYSLSASVACSKFCHAA  253
              K  D  ISISNY LSA+  CS+ C A 
Sbjct  177  DTKKADKKISISNYPLSAATVCSRICSAF  205



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00021535

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460980 pfam03587, EMG1, EMG1/NEP1 methyltransferase. Members ...  314     2e-110


>CDD:460980 pfam03587, EMG1, EMG1/NEP1 methyltransferase.  Members of this 
family are essential for 40S ribosomal biogenesis. The structure 
of EMG1 has revealed that it is a novel member of the 
superfamily of alpha/beta knot fold methyltransferases.
Length=205

 Score = 314 bits (808),  Expect = 2e-110, Method: Composition-based stats.
 Identities = 113/209 (54%), Positives = 135/209 (65%), Gaps = 6/209 (3%)

Query  47   VVLSHASLETYRASHGGRNGSGRDEKYSLLNSDEHIGVMRKMNRDISEARPDITHQCLLT  106
            VVL  ASLE        R G  +   Y LL+SD+H   M+K+ RD    RPDI HQCLL 
Sbjct  1    VVLEEASLELVPVEIRSRRG--KKPSYELLDSDDHYHAMKKLKRDPKRGRPDIVHQCLLA  58

Query  107  LLDSPINKAGKLQIYIHTAKGVLIEVNPSVRIPRTFKRFAGLMVQLLHRLSIRSTNSQEK  166
            LLDSP+NKAG LQ+YIHT  GVLIEVNP  RIPRT+KRFAGLM QLLH+ SIR+   +E 
Sbjct  59   LLDSPLNKAGLLQVYIHTEDGVLIEVNPETRIPRTYKRFAGLMEQLLHKGSIRAVEGEEP  118

Query  167  LLKVIKNPITDHLPPNCRKVTLSYEAPVVRVKDYIDSLGPKESICIFVGAMAKGQDDFAD  226
            LLKVIKNP+TDHLPP  +K+ LS     V   + + +L   E +   +GA A G  DF+D
Sbjct  119  LLKVIKNPLTDHLPPGSKKILLSESGEKVVPSELLAALALDEPVVFVIGAFAHG--DFSD  176

Query  227  SFK--DDTISISNYSLSASVACSKFCHAA  253
              K  D  ISISNY LSA+  CS+ C A 
Sbjct  177  DTKKADKKISISNYPLSAATVCSRICSAF  205



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00026612

Length=112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460980 pfam03587, EMG1, EMG1/NEP1 methyltransferase. Members ...  143     4e-45


>CDD:460980 pfam03587, EMG1, EMG1/NEP1 methyltransferase.  Members of this 
family are essential for 40S ribosomal biogenesis. The structure 
of EMG1 has revealed that it is a novel member of the 
superfamily of alpha/beta knot fold methyltransferases.
Length=205

 Score = 143 bits (362),  Expect = 4e-45, Method: Composition-based stats.
 Identities = 51/107 (48%), Positives = 65/107 (61%), Gaps = 4/107 (4%)

Query  1    MVQLLHRLSIRSTNSQEKLLKVIKNPITDHLPPNCRKVTLSYEAPVVRVKDYIDSLGPKE  60
            M QLLH+ SIR+   +E LLKVIKNP+TDHLPP  +K+ LS     V   + + +L   E
Sbjct  101  MEQLLHKGSIRAVEGEEPLLKVIKNPLTDHLPPGSKKILLSESGEKVVPSELLAALALDE  160

Query  61   SICIFVGAMAKGQDDFADSFK--DDTISISNYSLSASVACSKFCHAA  105
             +   +GA A G  DF+D  K  D  ISISNY LSA+  CS+ C A 
Sbjct  161  PVVFVIGAFAHG--DFSDDTKKADKKISISNYPLSAATVCSRICSAF  205



Lambda      K        H        a         alpha
   0.319    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00026613

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460980 pfam03587, EMG1, EMG1/NEP1 methyltransferase. Members ...  314     2e-110


>CDD:460980 pfam03587, EMG1, EMG1/NEP1 methyltransferase.  Members of this 
family are essential for 40S ribosomal biogenesis. The structure 
of EMG1 has revealed that it is a novel member of the 
superfamily of alpha/beta knot fold methyltransferases.
Length=205

 Score = 314 bits (808),  Expect = 2e-110, Method: Composition-based stats.
 Identities = 113/209 (54%), Positives = 135/209 (65%), Gaps = 6/209 (3%)

Query  47   VVLSHASLETYRASHGGRNGSGRDEKYSLLNSDEHIGVMRKMNRDISEARPDITHQCLLT  106
            VVL  ASLE        R G  +   Y LL+SD+H   M+K+ RD    RPDI HQCLL 
Sbjct  1    VVLEEASLELVPVEIRSRRG--KKPSYELLDSDDHYHAMKKLKRDPKRGRPDIVHQCLLA  58

Query  107  LLDSPINKAGKLQIYIHTAKGVLIEVNPSVRIPRTFKRFAGLMVQLLHRLSIRSTNSQEK  166
            LLDSP+NKAG LQ+YIHT  GVLIEVNP  RIPRT+KRFAGLM QLLH+ SIR+   +E 
Sbjct  59   LLDSPLNKAGLLQVYIHTEDGVLIEVNPETRIPRTYKRFAGLMEQLLHKGSIRAVEGEEP  118

Query  167  LLKVIKNPITDHLPPNCRKVTLSYEAPVVRVKDYIDSLGPKESICIFVGAMAKGQDDFAD  226
            LLKVIKNP+TDHLPP  +K+ LS     V   + + +L   E +   +GA A G  DF+D
Sbjct  119  LLKVIKNPLTDHLPPGSKKILLSESGEKVVPSELLAALALDEPVVFVIGAFAHG--DFSD  176

Query  227  SFK--DDTISISNYSLSASVACSKFCHAA  253
              K  D  ISISNY LSA+  CS+ C A 
Sbjct  177  DTKKADKKISISNYPLSAATVCSRICSAF  205



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00021536

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460980 pfam03587, EMG1, EMG1/NEP1 methyltransferase. Members ...  314     2e-110


>CDD:460980 pfam03587, EMG1, EMG1/NEP1 methyltransferase.  Members of this 
family are essential for 40S ribosomal biogenesis. The structure 
of EMG1 has revealed that it is a novel member of the 
superfamily of alpha/beta knot fold methyltransferases.
Length=205

 Score = 314 bits (807),  Expect = 2e-110, Method: Composition-based stats.
 Identities = 113/209 (54%), Positives = 135/209 (65%), Gaps = 6/209 (3%)

Query  41   VVLSHASLETYRASHGGRNGSGRDEKYSLLNSDEHIGVMRKMNRDISEARPDITHQCLLT  100
            VVL  ASLE        R G  +   Y LL+SD+H   M+K+ RD    RPDI HQCLL 
Sbjct  1    VVLEEASLELVPVEIRSRRG--KKPSYELLDSDDHYHAMKKLKRDPKRGRPDIVHQCLLA  58

Query  101  LLDSPINKAGKLQIYIHTAKGVLIEVNPSVRIPRTFKRFAGLMVQLLHRLSIRSTNSQEK  160
            LLDSP+NKAG LQ+YIHT  GVLIEVNP  RIPRT+KRFAGLM QLLH+ SIR+   +E 
Sbjct  59   LLDSPLNKAGLLQVYIHTEDGVLIEVNPETRIPRTYKRFAGLMEQLLHKGSIRAVEGEEP  118

Query  161  LLKVIKNPITDHLPPNCRKVTLSYEAPVVRVKDYIDSLGPKESICIFVGAMAKGQDDFAD  220
            LLKVIKNP+TDHLPP  +K+ LS     V   + + +L   E +   +GA A G  DF+D
Sbjct  119  LLKVIKNPLTDHLPPGSKKILLSESGEKVVPSELLAALALDEPVVFVIGAFAHG--DFSD  176

Query  221  SFK--DDTISISNYSLSASVACSKFCHAA  247
              K  D  ISISNY LSA+  CS+ C A 
Sbjct  177  DTKKADKKISISNYPLSAATVCSRICSAF  205



Lambda      K        H        a         alpha
   0.318    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00021537

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460980 pfam03587, EMG1, EMG1/NEP1 methyltransferase. Members ...  314     2e-110


>CDD:460980 pfam03587, EMG1, EMG1/NEP1 methyltransferase.  Members of this 
family are essential for 40S ribosomal biogenesis. The structure 
of EMG1 has revealed that it is a novel member of the 
superfamily of alpha/beta knot fold methyltransferases.
Length=205

 Score = 314 bits (807),  Expect = 2e-110, Method: Composition-based stats.
 Identities = 113/209 (54%), Positives = 135/209 (65%), Gaps = 6/209 (3%)

Query  41   VVLSHASLETYRASHGGRNGSGRDEKYSLLNSDEHIGVMRKMNRDISEARPDITHQCLLT  100
            VVL  ASLE        R G  +   Y LL+SD+H   M+K+ RD    RPDI HQCLL 
Sbjct  1    VVLEEASLELVPVEIRSRRG--KKPSYELLDSDDHYHAMKKLKRDPKRGRPDIVHQCLLA  58

Query  101  LLDSPINKAGKLQIYIHTAKGVLIEVNPSVRIPRTFKRFAGLMVQLLHRLSIRSTNSQEK  160
            LLDSP+NKAG LQ+YIHT  GVLIEVNP  RIPRT+KRFAGLM QLLH+ SIR+   +E 
Sbjct  59   LLDSPLNKAGLLQVYIHTEDGVLIEVNPETRIPRTYKRFAGLMEQLLHKGSIRAVEGEEP  118

Query  161  LLKVIKNPITDHLPPNCRKVTLSYEAPVVRVKDYIDSLGPKESICIFVGAMAKGQDDFAD  220
            LLKVIKNP+TDHLPP  +K+ LS     V   + + +L   E +   +GA A G  DF+D
Sbjct  119  LLKVIKNPLTDHLPPGSKKILLSESGEKVVPSELLAALALDEPVVFVIGAFAHG--DFSD  176

Query  221  SFK--DDTISISNYSLSASVACSKFCHAA  247
              K  D  ISISNY LSA+  CS+ C A 
Sbjct  177  DTKKADKKISISNYPLSAATVCSRICSAF  205



Lambda      K        H        a         alpha
   0.318    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00021538

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00026614

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.122    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00021539

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00021540

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00021541

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00026615

Length=272


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00021542

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459970 pfam00867, XPG_I, XPG I-region                             140     6e-42
CDD:395609 pfam00752, XPG_N, XPG N-terminal domain                    120     4e-34


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 140 bits (355),  Expect = 6e-42, Method: Composition-based stats.
 Identities = 49/87 (56%), Positives = 60/87 (69%), Gaps = 2/87 (2%)

Query  149  GIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ--RKEPIQE  206
            GIPY+ AP EAEAQCA L ++G V A  SED D L F AP LLR+LT   +   K P++E
Sbjct  1    GIPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEE  60

Query  207  IHLNRALEGLGMDRKQFIDLCILLGCD  233
            I L + L+ LG+ R+Q IDL ILLGCD
Sbjct  61   IDLEKILKELGLTREQLIDLAILLGCD  87


>CDD:395609 pfam00752, XPG_N, XPG N-terminal domain.  
Length=100

 Score = 120 bits (303),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 49/103 (48%), Positives = 65/103 (63%), Gaps = 8/103 (8%)

Query  2    GIKHLFQVIQENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSE-GQQLMSESGET  60
            GIK L  +++  A   I+  DI+   G+ +AIDAS+ +Y FL AVR + G  L     + 
Sbjct  1    GIKGLLPILKPVA--LIRPVDIEALEGKTLAIDASIWLYQFLKAVRDQLGNAL-----QN  53

Query  61   TSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTAR  103
            TSHLMG F R  R+ D GIKP++VFDG PP LK+  L KR+AR
Sbjct  54   TSHLMGFFSRLCRLKDFGIKPIFVFDGGPPPLKAETLQKRSAR  96



Lambda      K        H        a         alpha
   0.316    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00021544

Length=359
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459970 pfam00867, XPG_I, XPG I-region                             140     3e-42
CDD:395609 pfam00752, XPG_N, XPG N-terminal domain                    92.4    8e-24


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 140 bits (356),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 49/87 (56%), Positives = 60/87 (69%), Gaps = 2/87 (2%)

Query  113  GIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ--RKEPIQE  170
            GIPY+ AP EAEAQCA L ++G V A  SED D L F AP LLR+LT   +   K P++E
Sbjct  1    GIPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEE  60

Query  171  IHLNRALEGLGMDRKQFIDLCILLGCD  197
            I L + L+ LG+ R+Q IDL ILLGCD
Sbjct  61   IDLEKILKELGLTREQLIDLAILLGCD  87


>CDD:395609 pfam00752, XPG_N, XPG N-terminal domain.  
Length=100

 Score = 92.4 bits (230),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 44/68 (65%), Gaps = 6/68 (9%)

Query  1   MSIYSFLIAVRSE-GQQLMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSG  59
           + +Y FL AVR + G  L     + TSHLMG F R  R+ D GIKP++VFDG PP LK+ 
Sbjct  34  IWLYQFLKAVRDQLGNAL-----QNTSHLMGFFSRLCRLKDFGIKPIFVFDGGPPPLKAE  88

Query  60  ELAKRTAR  67
            L KR+AR
Sbjct  89  TLQKRSAR  96



Lambda      K        H        a         alpha
   0.316    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00026617

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459970 pfam00867, XPG_I, XPG I-region                             140     6e-42
CDD:395609 pfam00752, XPG_N, XPG N-terminal domain                    120     4e-34


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 140 bits (355),  Expect = 6e-42, Method: Composition-based stats.
 Identities = 49/87 (56%), Positives = 60/87 (69%), Gaps = 2/87 (2%)

Query  149  GIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ--RKEPIQE  206
            GIPY+ AP EAEAQCA L ++G V A  SED D L F AP LLR+LT   +   K P++E
Sbjct  1    GIPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEE  60

Query  207  IHLNRALEGLGMDRKQFIDLCILLGCD  233
            I L + L+ LG+ R+Q IDL ILLGCD
Sbjct  61   IDLEKILKELGLTREQLIDLAILLGCD  87


>CDD:395609 pfam00752, XPG_N, XPG N-terminal domain.  
Length=100

 Score = 120 bits (303),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 49/103 (48%), Positives = 65/103 (63%), Gaps = 8/103 (8%)

Query  2    GIKHLFQVIQENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSE-GQQLMSESGET  60
            GIK L  +++  A   I+  DI+   G+ +AIDAS+ +Y FL AVR + G  L     + 
Sbjct  1    GIKGLLPILKPVA--LIRPVDIEALEGKTLAIDASIWLYQFLKAVRDQLGNAL-----QN  53

Query  61   TSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTAR  103
            TSHLMG F R  R+ D GIKP++VFDG PP LK+  L KR+AR
Sbjct  54   TSHLMGFFSRLCRLKDFGIKPIFVFDGGPPPLKAETLQKRSAR  96



Lambda      K        H        a         alpha
   0.316    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00026616

Length=359
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459970 pfam00867, XPG_I, XPG I-region                             140     3e-42
CDD:395609 pfam00752, XPG_N, XPG N-terminal domain                    92.4    8e-24


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 140 bits (356),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 49/87 (56%), Positives = 60/87 (69%), Gaps = 2/87 (2%)

Query  113  GIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ--RKEPIQE  170
            GIPY+ AP EAEAQCA L ++G V A  SED D L F AP LLR+LT   +   K P++E
Sbjct  1    GIPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEE  60

Query  171  IHLNRALEGLGMDRKQFIDLCILLGCD  197
            I L + L+ LG+ R+Q IDL ILLGCD
Sbjct  61   IDLEKILKELGLTREQLIDLAILLGCD  87


>CDD:395609 pfam00752, XPG_N, XPG N-terminal domain.  
Length=100

 Score = 92.4 bits (230),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 44/68 (65%), Gaps = 6/68 (9%)

Query  1   MSIYSFLIAVRSE-GQQLMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSG  59
           + +Y FL AVR + G  L     + TSHLMG F R  R+ D GIKP++VFDG PP LK+ 
Sbjct  34  IWLYQFLKAVRDQLGNAL-----QNTSHLMGFFSRLCRLKDFGIKPIFVFDGGPPPLKAE  88

Query  60  ELAKRTAR  67
            L KR+AR
Sbjct  89  TLQKRSAR  96



Lambda      K        H        a         alpha
   0.316    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00021543

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395609 pfam00752, XPG_N, XPG N-terminal domain                    121     1e-35
CDD:459970 pfam00867, XPG_I, XPG I-region                             113     1e-32


>CDD:395609 pfam00752, XPG_N, XPG N-terminal domain.  
Length=100

 Score = 121 bits (305),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 49/103 (48%), Positives = 65/103 (63%), Gaps = 8/103 (8%)

Query  2    GIKHLFQVIQENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSE-GQQLMSESGET  60
            GIK L  +++  A   I+  DI+   G+ +AIDAS+ +Y FL AVR + G  L     + 
Sbjct  1    GIKGLLPILKPVA--LIRPVDIEALEGKTLAIDASIWLYQFLKAVRDQLGNAL-----QN  53

Query  61   TSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTAR  103
            TSHLMG F R  R+ D GIKP++VFDG PP LK+  L KR+AR
Sbjct  54   TSHLMGFFSRLCRLKDFGIKPIFVFDGGPPPLKAETLQKRSAR  96


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 113 bits (285),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 40/76 (53%), Positives = 51/76 (67%), Gaps = 2/76 (3%)

Query  149  GIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ--RKEPIQE  206
            GIPY+ AP EAEAQCA L ++G V A  SED D L F AP LLR+LT   +   K P++E
Sbjct  1    GIPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEE  60

Query  207  IHLNRALEGLGMDRKQ  222
            I L + L+ LG+ R+Q
Sbjct  61   IDLEKILKELGLTREQ  76



Lambda      K        H        a         alpha
   0.319    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00026618

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459970 pfam00867, XPG_I, XPG I-region                             140     2e-42
CDD:395609 pfam00752, XPG_N, XPG N-terminal domain                    79.7    3e-19


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 140 bits (356),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 49/87 (56%), Positives = 60/87 (69%), Gaps = 2/87 (2%)

Query  96   GIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ--RKEPIQE  153
            GIPY+ AP EAEAQCA L ++G V A  SED D L F AP LLR+LT   +   K P++E
Sbjct  1    GIPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEE  60

Query  154  IHLNRALEGLGMDRKQFIDLCILLGCD  180
            I L + L+ LG+ R+Q IDL ILLGCD
Sbjct  61   IDLEKILKELGLTREQLIDLAILLGCD  87


>CDD:395609 pfam00752, XPG_N, XPG N-terminal domain.  
Length=100

 Score = 79.7 bits (197),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 0/45 (0%)

Query  6   ETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTAR  50
           + TSHLMG F R  R+ D GIKP++VFDG PP LK+  L KR+AR
Sbjct  52  QNTSHLMGFFSRLCRLKDFGIKPIFVFDGGPPPLKAETLQKRSAR  96



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00021545

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459970 pfam00867, XPG_I, XPG I-region                             140     5e-42
CDD:395609 pfam00752, XPG_N, XPG N-terminal domain                    93.2    7e-24


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 140 bits (356),  Expect = 5e-42, Method: Composition-based stats.
 Identities = 49/87 (56%), Positives = 60/87 (69%), Gaps = 2/87 (2%)

Query  148  GIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ--RKEPIQE  205
            GIPY+ AP EAEAQCA L ++G V A  SED D L F AP LLR+LT   +   K P++E
Sbjct  1    GIPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEE  60

Query  206  IHLNRALEGLGMDRKQFIDLCILLGCD  232
            I L + L+ LG+ R+Q IDL ILLGCD
Sbjct  61   IDLEKILKELGLTREQLIDLAILLGCD  87


>CDD:395609 pfam00752, XPG_N, XPG N-terminal domain.  
Length=100

 Score = 93.2 bits (232),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 6/68 (9%)

Query  36   MYIYSFLIAVRSE-GQQLMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSG  94
            +++Y FL AVR + G  L     + TSHLMG F R  R+ D GIKP++VFDG PP LK+ 
Sbjct  34   IWLYQFLKAVRDQLGNAL-----QNTSHLMGFFSRLCRLKDFGIKPIFVFDGGPPPLKAE  88

Query  95   ELAKRTAR  102
             L KR+AR
Sbjct  89   TLQKRSAR  96



Lambda      K        H        a         alpha
   0.317    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00026619

Length=359
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459970 pfam00867, XPG_I, XPG I-region                             140     3e-42
CDD:395609 pfam00752, XPG_N, XPG N-terminal domain                    92.4    8e-24


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 140 bits (356),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 49/87 (56%), Positives = 60/87 (69%), Gaps = 2/87 (2%)

Query  113  GIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ--RKEPIQE  170
            GIPY+ AP EAEAQCA L ++G V A  SED D L F AP LLR+LT   +   K P++E
Sbjct  1    GIPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEE  60

Query  171  IHLNRALEGLGMDRKQFIDLCILLGCD  197
            I L + L+ LG+ R+Q IDL ILLGCD
Sbjct  61   IDLEKILKELGLTREQLIDLAILLGCD  87


>CDD:395609 pfam00752, XPG_N, XPG N-terminal domain.  
Length=100

 Score = 92.4 bits (230),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 44/68 (65%), Gaps = 6/68 (9%)

Query  1   MSIYSFLIAVRSE-GQQLMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSG  59
           + +Y FL AVR + G  L     + TSHLMG F R  R+ D GIKP++VFDG PP LK+ 
Sbjct  34  IWLYQFLKAVRDQLGNAL-----QNTSHLMGFFSRLCRLKDFGIKPIFVFDGGPPPLKAE  88

Query  60  ELAKRTAR  67
            L KR+AR
Sbjct  89  TLQKRSAR  96



Lambda      K        H        a         alpha
   0.316    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00021547

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459970 pfam00867, XPG_I, XPG I-region                             140     2e-42
CDD:395609 pfam00752, XPG_N, XPG N-terminal domain                    79.7    3e-19


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 140 bits (356),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 49/87 (56%), Positives = 60/87 (69%), Gaps = 2/87 (2%)

Query  96   GIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ--RKEPIQE  153
            GIPY+ AP EAEAQCA L ++G V A  SED D L F AP LLR+LT   +   K P++E
Sbjct  1    GIPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEE  60

Query  154  IHLNRALEGLGMDRKQFIDLCILLGCD  180
            I L + L+ LG+ R+Q IDL ILLGCD
Sbjct  61   IDLEKILKELGLTREQLIDLAILLGCD  87


>CDD:395609 pfam00752, XPG_N, XPG N-terminal domain.  
Length=100

 Score = 79.7 bits (197),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 0/45 (0%)

Query  6   ETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTAR  50
           + TSHLMG F R  R+ D GIKP++VFDG PP LK+  L KR+AR
Sbjct  52  QNTSHLMGFFSRLCRLKDFGIKPIFVFDGGPPPLKAETLQKRSAR  96



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00026620

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459970 pfam00867, XPG_I, XPG I-region                             140     2e-42
CDD:395609 pfam00752, XPG_N, XPG N-terminal domain                    79.7    3e-19


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 140 bits (356),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 49/87 (56%), Positives = 60/87 (69%), Gaps = 2/87 (2%)

Query  96   GIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ--RKEPIQE  153
            GIPY+ AP EAEAQCA L ++G V A  SED D L F AP LLR+LT   +   K P++E
Sbjct  1    GIPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEE  60

Query  154  IHLNRALEGLGMDRKQFIDLCILLGCD  180
            I L + L+ LG+ R+Q IDL ILLGCD
Sbjct  61   IDLEKILKELGLTREQLIDLAILLGCD  87


>CDD:395609 pfam00752, XPG_N, XPG N-terminal domain.  
Length=100

 Score = 79.7 bits (197),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 0/45 (0%)

Query  6   ETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTAR  50
           + TSHLMG F R  R+ D GIKP++VFDG PP LK+  L KR+AR
Sbjct  52  QNTSHLMGFFSRLCRLKDFGIKPIFVFDGGPPPLKAETLQKRSAR  96



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00021548

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459970 pfam00867, XPG_I, XPG I-region                             140     2e-42
CDD:395609 pfam00752, XPG_N, XPG N-terminal domain                    79.7    3e-19


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 140 bits (356),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 49/87 (56%), Positives = 60/87 (69%), Gaps = 2/87 (2%)

Query  96   GIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ--RKEPIQE  153
            GIPY+ AP EAEAQCA L ++G V A  SED D L F AP LLR+LT   +   K P++E
Sbjct  1    GIPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEE  60

Query  154  IHLNRALEGLGMDRKQFIDLCILLGCD  180
            I L + L+ LG+ R+Q IDL ILLGCD
Sbjct  61   IDLEKILKELGLTREQLIDLAILLGCD  87


>CDD:395609 pfam00752, XPG_N, XPG N-terminal domain.  
Length=100

 Score = 79.7 bits (197),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 0/45 (0%)

Query  6   ETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTAR  50
           + TSHLMG F R  R+ D GIKP++VFDG PP LK+  L KR+AR
Sbjct  52  QNTSHLMGFFSRLCRLKDFGIKPIFVFDGGPPPLKAETLQKRSAR  96



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00021549

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459970 pfam00867, XPG_I, XPG I-region                             140     2e-42
CDD:395609 pfam00752, XPG_N, XPG N-terminal domain                    79.7    3e-19


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 140 bits (356),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 49/87 (56%), Positives = 60/87 (69%), Gaps = 2/87 (2%)

Query  96   GIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ--RKEPIQE  153
            GIPY+ AP EAEAQCA L ++G V A  SED D L F AP LLR+LT   +   K P++E
Sbjct  1    GIPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEE  60

Query  154  IHLNRALEGLGMDRKQFIDLCILLGCD  180
            I L + L+ LG+ R+Q IDL ILLGCD
Sbjct  61   IDLEKILKELGLTREQLIDLAILLGCD  87


>CDD:395609 pfam00752, XPG_N, XPG N-terminal domain.  
Length=100

 Score = 79.7 bits (197),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 0/45 (0%)

Query  6   ETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTAR  50
           + TSHLMG F R  R+ D GIKP++VFDG PP LK+  L KR+AR
Sbjct  52  QNTSHLMGFFSRLCRLKDFGIKPIFVFDGGPPPLKAETLQKRSAR  96



Lambda      K        H        a         alpha
   0.315    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00021546

Length=359
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459970 pfam00867, XPG_I, XPG I-region                             140     3e-42
CDD:395609 pfam00752, XPG_N, XPG N-terminal domain                    92.4    8e-24


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 140 bits (356),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 49/87 (56%), Positives = 60/87 (69%), Gaps = 2/87 (2%)

Query  113  GIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQ--RKEPIQE  170
            GIPY+ AP EAEAQCA L ++G V A  SED D L F AP LLR+LT   +   K P++E
Sbjct  1    GIPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEE  60

Query  171  IHLNRALEGLGMDRKQFIDLCILLGCD  197
            I L + L+ LG+ R+Q IDL ILLGCD
Sbjct  61   IDLEKILKELGLTREQLIDLAILLGCD  87


>CDD:395609 pfam00752, XPG_N, XPG N-terminal domain.  
Length=100

 Score = 92.4 bits (230),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 44/68 (65%), Gaps = 6/68 (9%)

Query  1   MSIYSFLIAVRSE-GQQLMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSG  59
           + +Y FL AVR + G  L     + TSHLMG F R  R+ D GIKP++VFDG PP LK+ 
Sbjct  34  IWLYQFLKAVRDQLGNAL-----QNTSHLMGFFSRLCRLKDFGIKPIFVFDGGPPPLKAE  88

Query  60  ELAKRTAR  67
            L KR+AR
Sbjct  89  TLQKRSAR  96



Lambda      K        H        a         alpha
   0.316    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00021550

Length=138
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 fa...  99.5    3e-29


>CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 family.  
Linker histone H1 is an essential component of chromatin structure. 
H1 links nucleosomes into higher order structures Histone 
H1 is replaced by histone H5 in some cell types.
Length=71

 Score = 99.5 bits (249),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 40/73 (55%), Positives = 47/73 (64%), Gaps = 4/73 (5%)

Query  18  HASYRDMIKDAILNLKERNGSSRQSIKKYVLANNKIAFASQAAFDSQFNKAIKAGVEKGE  77
           H  Y DMIK+AI  LKER GSSRQ+IKKY+ AN K+     A F+S   +A+K GVEKG 
Sbjct  1   HPPYSDMIKEAIKALKERKGSSRQAIKKYIKANYKV--GDVAKFNSLLKRALKKGVEKGT  58

Query  78  FTQPK--GPSGPV  88
             QPK  G SG  
Sbjct  59  LVQPKGTGASGSF  71



Lambda      K        H        a         alpha
   0.309    0.124    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00026621

Length=167
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 fa...  97.2    8e-28


>CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 family.  
Linker histone H1 is an essential component of chromatin structure. 
H1 links nucleosomes into higher order structures Histone 
H1 is replaced by histone H5 in some cell types.
Length=71

 Score = 97.2 bits (243),  Expect = 8e-28, Method: Composition-based stats.
 Identities = 40/73 (55%), Positives = 47/73 (64%), Gaps = 4/73 (5%)

Query  18  HASYRDMIKDAILNLKERNGSSRQSIKKYVLANNKIAFASQAAFDSQFNKAIKAGVEKGE  77
           H  Y DMIK+AI  LKER GSSRQ+IKKY+ AN K+     A F+S   +A+K GVEKG 
Sbjct  1   HPPYSDMIKEAIKALKERKGSSRQAIKKYIKANYKV--GDVAKFNSLLKRALKKGVEKGT  58

Query  78  FTQPK--GPSGPV  88
             QPK  G SG  
Sbjct  59  LVQPKGTGASGSF  71



Lambda      K        H        a         alpha
   0.302    0.115    0.302    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00021551

Length=138
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 fa...  99.5    3e-29


>CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 family.  
Linker histone H1 is an essential component of chromatin structure. 
H1 links nucleosomes into higher order structures Histone 
H1 is replaced by histone H5 in some cell types.
Length=71

 Score = 99.5 bits (249),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 40/73 (55%), Positives = 47/73 (64%), Gaps = 4/73 (5%)

Query  18  HASYRDMIKDAILNLKERNGSSRQSIKKYVLANNKIAFASQAAFDSQFNKAIKAGVEKGE  77
           H  Y DMIK+AI  LKER GSSRQ+IKKY+ AN K+     A F+S   +A+K GVEKG 
Sbjct  1   HPPYSDMIKEAIKALKERKGSSRQAIKKYIKANYKV--GDVAKFNSLLKRALKKGVEKGT  58

Query  78  FTQPK--GPSGPV  88
             QPK  G SG  
Sbjct  59  LVQPKGTGASGSF  71



Lambda      K        H        a         alpha
   0.309    0.124    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00021552

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 fa...  96.8    4e-27


>CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 family.  
Linker histone H1 is an essential component of chromatin structure. 
H1 links nucleosomes into higher order structures Histone 
H1 is replaced by histone H5 in some cell types.
Length=71

 Score = 96.8 bits (242),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 40/73 (55%), Positives = 47/73 (64%), Gaps = 4/73 (5%)

Query  18  HASYRDMIKDAILNLKERNGSSRQSIKKYVLANNKIAFASQAAFDSQFNKAIKAGVEKGE  77
           H  Y DMIK+AI  LKER GSSRQ+IKKY+ AN K+     A F+S   +A+K GVEKG 
Sbjct  1   HPPYSDMIKEAIKALKERKGSSRQAIKKYIKANYKV--GDVAKFNSLLKRALKKGVEKGT  58

Query  78  FTQPK--GPSGPV  88
             QPK  G SG  
Sbjct  59  LVQPKGTGASGSF  71



Lambda      K        H        a         alpha
   0.300    0.112    0.289    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00021553

Length=206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 fa...  96.8    4e-27


>CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 family.  
Linker histone H1 is an essential component of chromatin structure. 
H1 links nucleosomes into higher order structures Histone 
H1 is replaced by histone H5 in some cell types.
Length=71

 Score = 96.8 bits (242),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 40/73 (55%), Positives = 47/73 (64%), Gaps = 4/73 (5%)

Query  18  HASYRDMIKDAILNLKERNGSSRQSIKKYVLANNKIAFASQAAFDSQFNKAIKAGVEKGE  77
           H  Y DMIK+AI  LKER GSSRQ+IKKY+ AN K+     A F+S   +A+K GVEKG 
Sbjct  1   HPPYSDMIKEAIKALKERKGSSRQAIKKYIKANYKV--GDVAKFNSLLKRALKKGVEKGT  58

Query  78  FTQPK--GPSGPV  88
             QPK  G SG  
Sbjct  59  LVQPKGTGASGSF  71



Lambda      K        H        a         alpha
   0.300    0.112    0.289    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00021554

Length=83
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 fa...  92.6    2e-27


>CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 family.  
Linker histone H1 is an essential component of chromatin structure. 
H1 links nucleosomes into higher order structures Histone 
H1 is replaced by histone H5 in some cell types.
Length=71

 Score = 92.6 bits (231),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 38/66 (58%), Positives = 45/66 (68%), Gaps = 2/66 (3%)

Query  18  HASYRDMIKDAILNLKERNGSSRQSIKKYVLANNKIAFASQAAFDSQFNKAIKAGVEKGE  77
           H  Y DMIK+AI  LKER GSSRQ+IKKY+ AN K+     A F+S   +A+K GVEKG 
Sbjct  1   HPPYSDMIKEAIKALKERKGSSRQAIKKYIKANYKV--GDVAKFNSLLKRALKKGVEKGT  58

Query  78  FTQPKG  83
             QPKG
Sbjct  59  LVQPKG  64



Lambda      K        H        a         alpha
   0.309    0.122    0.323    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00021555

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 fa...  96.4    5e-27


>CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 family.  
Linker histone H1 is an essential component of chromatin structure. 
H1 links nucleosomes into higher order structures Histone 
H1 is replaced by histone H5 in some cell types.
Length=71

 Score = 96.4 bits (241),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 40/73 (55%), Positives = 47/73 (64%), Gaps = 4/73 (5%)

Query  18  HASYRDMIKDAILNLKERNGSSRQSIKKYVLANNKIAFASQAAFDSQFNKAIKAGVEKGE  77
           H  Y DMIK+AI  LKER GSSRQ+IKKY+ AN K+     A F+S   +A+K GVEKG 
Sbjct  1   HPPYSDMIKEAIKALKERKGSSRQAIKKYIKANYKV--GDVAKFNSLLKRALKKGVEKGT  58

Query  78  FTQPK--GPSGPV  88
             QPK  G SG  
Sbjct  59  LVQPKGTGASGSF  71



Lambda      K        H        a         alpha
   0.301    0.113    0.292    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00026622

Length=184
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 fa...  96.8    2e-27


>CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 family.  
Linker histone H1 is an essential component of chromatin structure. 
H1 links nucleosomes into higher order structures Histone 
H1 is replaced by histone H5 in some cell types.
Length=71

 Score = 96.8 bits (242),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 40/73 (55%), Positives = 47/73 (64%), Gaps = 4/73 (5%)

Query  18  HASYRDMIKDAILNLKERNGSSRQSIKKYVLANNKIAFASQAAFDSQFNKAIKAGVEKGE  77
           H  Y DMIK+AI  LKER GSSRQ+IKKY+ AN K+     A F+S   +A+K GVEKG 
Sbjct  1   HPPYSDMIKEAIKALKERKGSSRQAIKKYIKANYKV--GDVAKFNSLLKRALKKGVEKGT  58

Query  78  FTQPK--GPSGPV  88
             QPK  G SG  
Sbjct  59  LVQPKGTGASGSF  71



Lambda      K        H        a         alpha
   0.303    0.115    0.301    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00026623

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 fa...  96.8    2e-27


>CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 family.  
Linker histone H1 is an essential component of chromatin structure. 
H1 links nucleosomes into higher order structures Histone 
H1 is replaced by histone H5 in some cell types.
Length=71

 Score = 96.8 bits (242),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 40/73 (55%), Positives = 47/73 (64%), Gaps = 4/73 (5%)

Query  18  HASYRDMIKDAILNLKERNGSSRQSIKKYVLANNKIAFASQAAFDSQFNKAIKAGVEKGE  77
           H  Y DMIK+AI  LKER GSSRQ+IKKY+ AN K+     A F+S   +A+K GVEKG 
Sbjct  1   HPPYSDMIKEAIKALKERKGSSRQAIKKYIKANYKV--GDVAKFNSLLKRALKKGVEKGT  58

Query  78  FTQPK--GPSGPV  88
             QPK  G SG  
Sbjct  59  LVQPKGTGASGSF  71



Lambda      K        H        a         alpha
   0.302    0.114    0.295    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00026624

Length=168
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 fa...   99     7e-29


>CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 family.  
Linker histone H1 is an essential component of chromatin structure. 
H1 links nucleosomes into higher order structures Histone 
H1 is replaced by histone H5 in some cell types.
Length=71

 Score =  99 bits (250),  Expect = 7e-29, Method: Composition-based stats.
 Identities = 40/73 (55%), Positives = 47/73 (64%), Gaps = 4/73 (5%)

Query  18  HASYRDMIKDAILNLKERNGSSRQSIKKYVLANNKIAFASQAAFDSQFNKAIKAGVEKGE  77
           H  Y DMIK+AI  LKER GSSRQ+IKKY+ AN K+     A F+S   +A+K GVEKG 
Sbjct  1   HPPYSDMIKEAIKALKERKGSSRQAIKKYIKANYKV--GDVAKFNSLLKRALKKGVEKGT  58

Query  78  FTQPK--GPSGPV  88
             QPK  G SG  
Sbjct  59  LVQPKGTGASGSF  71



Lambda      K        H        a         alpha
   0.306    0.117    0.318    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00021556

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 fa...  96.8    2e-27


>CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 family.  
Linker histone H1 is an essential component of chromatin structure. 
H1 links nucleosomes into higher order structures Histone 
H1 is replaced by histone H5 in some cell types.
Length=71

 Score = 96.8 bits (242),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 40/73 (55%), Positives = 47/73 (64%), Gaps = 4/73 (5%)

Query  18  HASYRDMIKDAILNLKERNGSSRQSIKKYVLANNKIAFASQAAFDSQFNKAIKAGVEKGE  77
           H  Y DMIK+AI  LKER GSSRQ+IKKY+ AN K+     A F+S   +A+K GVEKG 
Sbjct  1   HPPYSDMIKEAIKALKERKGSSRQAIKKYIKANYKV--GDVAKFNSLLKRALKKGVEKGT  58

Query  78  FTQPK--GPSGPV  88
             QPK  G SG  
Sbjct  59  LVQPKGTGASGSF  71



Lambda      K        H        a         alpha
   0.303    0.115    0.302    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00026625

Length=184
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 fa...  96.8    2e-27


>CDD:459846 pfam00538, Linker_histone, linker histone H1 and H5 family.  
Linker histone H1 is an essential component of chromatin structure. 
H1 links nucleosomes into higher order structures Histone 
H1 is replaced by histone H5 in some cell types.
Length=71

 Score = 96.8 bits (242),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 40/73 (55%), Positives = 47/73 (64%), Gaps = 4/73 (5%)

Query  18  HASYRDMIKDAILNLKERNGSSRQSIKKYVLANNKIAFASQAAFDSQFNKAIKAGVEKGE  77
           H  Y DMIK+AI  LKER GSSRQ+IKKY+ AN K+     A F+S   +A+K GVEKG 
Sbjct  1   HPPYSDMIKEAIKALKERKGSSRQAIKKYIKANYKV--GDVAKFNSLLKRALKKGVEKGT  58

Query  78  FTQPK--GPSGPV  88
             QPK  G SG  
Sbjct  59  LVQPKGTGASGSF  71



Lambda      K        H        a         alpha
   0.303    0.115    0.301    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00021557

Length=881
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460234 pfam01504, PIP5K, Phosphatidylinositol-4-phosphate 5-K...  390     2e-131


>CDD:460234 pfam01504, PIP5K, Phosphatidylinositol-4-phosphate 5-Kinase. 
 This family contains a region from the common kinase core found 
in the type I phosphatidylinositol-4-phosphate 5-kinase 
(PIP5K) family as described in. The family consists of various 
type I, II and III PIP5K enzymes. PIP5K catalyzes the formation 
of phosphoinositol-4,5-bisphosphate via the phosphorylation 
of phosphatidylinositol-4-phosphate a precursor in the 
phosphinositide signaling pathway.
Length=227

 Score = 390 bits (1005),  Expect = 2e-131, Method: Composition-based stats.
 Identities = 144/320 (45%), Positives = 175/320 (55%), Gaps = 93/320 (29%)

Query  431  LTSKYILSELGSPGKSGSFFYFSRDYKYIIKTIHHSEHKLLRKILPEYYKHVEQNPNTLI  490
            LT K ILSEL SPGKSGSFFYFSRD ++IIKTI  SEHK LRKILP+YY+HV+QNPNTL+
Sbjct  1    LTGKSILSELSSPGKSGSFFYFSRDDRFIIKTITKSEHKFLRKILPDYYEHVKQNPNTLL  60

Query  491  SQFYGLHRVKMAYGRKIHFVVMNNLFPPHRDIHQTFDLKGSTIGRDLREQDLERNPRATL  550
             +FYGLHRVK   G+KI+FVVMNNLFP   DIH+ +DLKGST+GR  ++++ E++   TL
Sbjct  61   PRFYGLHRVKP-GGKKIYFVVMNNLFPTDLDIHERYDLKGSTVGRTAKKKEREKDEPTTL  119

Query  551  KDLNWLRRGRHLECGPSKRQFFLAQLERDVELLKKLKIMDYSLLVGIHDLGRGNEEKLRD  610
            KDL++L R   L  GP KR+  L QLERD E L+ L IMDYSLL+GIHDL          
Sbjct  120  KDLDFLERKLKLRLGPEKREALLKQLERDCEFLESLNIMDYSLLLGIHDL----------  169

Query  611  KTLQVFQPGGDREEETSPNMLMRTPSKLENERKARELRMLIKKERPVPLDKAAAKMPEEI  670
                                                                        
Sbjct       ------------------------------------------------------------  

Query  671  LDERQYHVFYADDGGFRATHENGQPGDEIYYLGIIDCLTHYGTVKKLENFFKGLSHDRGQ  730
                                   + G EIYYLGIID LT Y   KKLE+ +K L HD   
Sbjct  170  ----------------------DEDGKEIYYLGIIDILTEYNLKKKLEHAWKSLVHDGDS  207

Query  731  ISPIPPESYGDRFVKFIKGI  750
            IS +PP+ Y +RF+KFI+ I
Sbjct  208  ISAVPPKEYAERFLKFIEKI  227



Lambda      K        H        a         alpha
   0.313    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1128314004


Query= TCONS_00021558

Length=905
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460234 pfam01504, PIP5K, Phosphatidylinositol-4-phosphate 5-K...  390     4e-131


>CDD:460234 pfam01504, PIP5K, Phosphatidylinositol-4-phosphate 5-Kinase. 
 This family contains a region from the common kinase core found 
in the type I phosphatidylinositol-4-phosphate 5-kinase 
(PIP5K) family as described in. The family consists of various 
type I, II and III PIP5K enzymes. PIP5K catalyzes the formation 
of phosphoinositol-4,5-bisphosphate via the phosphorylation 
of phosphatidylinositol-4-phosphate a precursor in the 
phosphinositide signaling pathway.
Length=227

 Score = 390 bits (1005),  Expect = 4e-131, Method: Composition-based stats.
 Identities = 144/320 (45%), Positives = 175/320 (55%), Gaps = 93/320 (29%)

Query  455  LTSKYILSELGSPGKSGSFFYFSRDYKYIIKTIHHSEHKLLRKILPEYYKHVEQNPNTLI  514
            LT K ILSEL SPGKSGSFFYFSRD ++IIKTI  SEHK LRKILP+YY+HV+QNPNTL+
Sbjct  1    LTGKSILSELSSPGKSGSFFYFSRDDRFIIKTITKSEHKFLRKILPDYYEHVKQNPNTLL  60

Query  515  SQFYGLHRVKMAYGRKIHFVVMNNLFPPHRDIHQTFDLKGSTIGRDLREQDLERNPRATL  574
             +FYGLHRVK   G+KI+FVVMNNLFP   DIH+ +DLKGST+GR  ++++ E++   TL
Sbjct  61   PRFYGLHRVKP-GGKKIYFVVMNNLFPTDLDIHERYDLKGSTVGRTAKKKEREKDEPTTL  119

Query  575  KDLNWLRRGRHLECGPSKRQFFLAQLERDVELLKKLKIMDYSLLVGIHDLGRGNEEKLRD  634
            KDL++L R   L  GP KR+  L QLERD E L+ L IMDYSLL+GIHDL          
Sbjct  120  KDLDFLERKLKLRLGPEKREALLKQLERDCEFLESLNIMDYSLLLGIHDL----------  169

Query  635  KTLQVFQPGGDREEETSPNMLMRTPSKLENERKARELRMLIKKERPVPLDKAAAKMPEEI  694
                                                                        
Sbjct       ------------------------------------------------------------  

Query  695  LDERQYHVFYADDGGFRATHENGQPGDEIYYLGIIDCLTHYGTVKKLENFFKGLSHDRGQ  754
                                   + G EIYYLGIID LT Y   KKLE+ +K L HD   
Sbjct  170  ----------------------DEDGKEIYYLGIIDILTEYNLKKKLEHAWKSLVHDGDS  207

Query  755  ISPIPPESYGDRFVKFIKGI  774
            IS +PP+ Y +RF+KFI+ I
Sbjct  208  ISAVPPKEYAERFLKFIEKI  227



Lambda      K        H        a         alpha
   0.314    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0831    0.140     1.90     42.6     43.6 

Effective search space used: 1162766340


Query= TCONS_00021559

Length=905
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460234 pfam01504, PIP5K, Phosphatidylinositol-4-phosphate 5-K...  390     4e-131


>CDD:460234 pfam01504, PIP5K, Phosphatidylinositol-4-phosphate 5-Kinase. 
 This family contains a region from the common kinase core found 
in the type I phosphatidylinositol-4-phosphate 5-kinase 
(PIP5K) family as described in. The family consists of various 
type I, II and III PIP5K enzymes. PIP5K catalyzes the formation 
of phosphoinositol-4,5-bisphosphate via the phosphorylation 
of phosphatidylinositol-4-phosphate a precursor in the 
phosphinositide signaling pathway.
Length=227

 Score = 390 bits (1005),  Expect = 4e-131, Method: Composition-based stats.
 Identities = 144/320 (45%), Positives = 175/320 (55%), Gaps = 93/320 (29%)

Query  455  LTSKYILSELGSPGKSGSFFYFSRDYKYIIKTIHHSEHKLLRKILPEYYKHVEQNPNTLI  514
            LT K ILSEL SPGKSGSFFYFSRD ++IIKTI  SEHK LRKILP+YY+HV+QNPNTL+
Sbjct  1    LTGKSILSELSSPGKSGSFFYFSRDDRFIIKTITKSEHKFLRKILPDYYEHVKQNPNTLL  60

Query  515  SQFYGLHRVKMAYGRKIHFVVMNNLFPPHRDIHQTFDLKGSTIGRDLREQDLERNPRATL  574
             +FYGLHRVK   G+KI+FVVMNNLFP   DIH+ +DLKGST+GR  ++++ E++   TL
Sbjct  61   PRFYGLHRVKP-GGKKIYFVVMNNLFPTDLDIHERYDLKGSTVGRTAKKKEREKDEPTTL  119

Query  575  KDLNWLRRGRHLECGPSKRQFFLAQLERDVELLKKLKIMDYSLLVGIHDLGRGNEEKLRD  634
            KDL++L R   L  GP KR+  L QLERD E L+ L IMDYSLL+GIHDL          
Sbjct  120  KDLDFLERKLKLRLGPEKREALLKQLERDCEFLESLNIMDYSLLLGIHDL----------  169

Query  635  KTLQVFQPGGDREEETSPNMLMRTPSKLENERKARELRMLIKKERPVPLDKAAAKMPEEI  694
                                                                        
Sbjct       ------------------------------------------------------------  

Query  695  LDERQYHVFYADDGGFRATHENGQPGDEIYYLGIIDCLTHYGTVKKLENFFKGLSHDRGQ  754
                                   + G EIYYLGIID LT Y   KKLE+ +K L HD   
Sbjct  170  ----------------------DEDGKEIYYLGIIDILTEYNLKKKLEHAWKSLVHDGDS  207

Query  755  ISPIPPESYGDRFVKFIKGI  774
            IS +PP+ Y +RF+KFI+ I
Sbjct  208  ISAVPPKEYAERFLKFIEKI  227



Lambda      K        H        a         alpha
   0.314    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1162766340


Query= TCONS_00021560

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462452 pfam08375, Rpn3_C, Proteasome regulatory subunit C-ter...  99.2    5e-26
CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  88.4    1e-21


>CDD:462452 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal. 
 This eukaryotic domain is found at the C-terminus of 26S proteasome 
regulatory subunits such as the non-ATPase Rpn3 subunit 
which is essential for proteasomal function. It occurs 
together with the PCI/PINT domain (pfam01399).
Length=57

 Score = 99.2 bits (248),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 38/57 (67%), Positives = 48/57 (84%), Gaps = 1/57 (2%)

Query  542  DIYATREPGEVFHERIRACLALHDESVKAMRFPMNQHRLELKSAQEARER-ERELAK  597
            D+Y+T EP E FH+RI+ CL LH+ESVKAMR+P + H+ EL+SA+EARER ERELAK
Sbjct  1    DVYSTNEPQEAFHQRIKFCLQLHNESVKAMRYPPDAHKKELESAEEAREREERELAK  57


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 88.4 bits (220),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 36/101 (36%), Positives = 52/101 (51%), Gaps = 2/101 (2%)

Query  436  PYFLLVQAVSVGDLDGFLNIVNTHSAT-FRKDGTYTLILRLRQNVIKTGIRMMSLSYSRI  494
             Y  L++A   GDL  F  I+  +       DG    +  LR+ + +  +R +S  YS I
Sbjct  2    AYRDLLRAFYSGDLSEFEEILADYKEELLLDDGLAEHLEDLRRKIREHNLRQLSKPYSSI  61

Query  495  SLRDICLRLGLDSEESAEYIVAKAIRDGVIEATLDHEHGYM  535
            SL D+   LGL  +E  E I+AK IRDG I A +D  +G +
Sbjct  62   SLSDLAKLLGLSVDE-VEKILAKLIRDGRIRAKIDQVNGIV  101



Lambda      K        H        a         alpha
   0.315    0.130    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 783080272


Query= TCONS_00026626

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          247     3e-80


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 247 bits (632),  Expect = 3e-80, Method: Composition-based stats.
 Identities = 94/305 (31%), Positives = 134/305 (44%), Gaps = 59/305 (19%)

Query  102  HPTLDKVAKYYTRSEGKHMRPLLVLLMSQATALTPGKSRPNDVAPISVNDPISSPSILAD  161
               L +   Y   + GK +RPLLVLL ++A                              
Sbjct  1    EKLLYEPLDYLVSAGGKRIRPLLVLLSAEA------------------------------  30

Query  162  TNPDTNSLVSESAEAQYDFVGDENILPSQRRLAEITELIHTASLLHDDVIDNAVSRRSSN  221
                               +G    L     LA   EL+H ASL+HDD++DN+  RR   
Sbjct  31   -------------------LGGPEDLEKAIVLAWAVELLHAASLVHDDIMDNSDLRRGQP  71

Query  222  SANLQFGNKMAVLAGDFLLGRASVALARLRD-PEVTELLATVIANLVEGEFMQLKNTVAD  280
            + +  FGN +A+  GD+L   A   LA+L   PE+ EL + V     EG+ + L     D
Sbjct  72   TWHRIFGNAIAINDGDYLYALAFQLLAKLFPNPELLELFSEVTLQTAEGQGLDLLWRNDD  131

Query  281  EKNPVFTDETISYYLQKTYLKTASLISKSCRAAALLGGSAPEVVEAAYSYGRNLGLAFQL  340
            +        T   YL+    KTA L + + +  A+L G+  EV+EA   YG NLGLAFQ+
Sbjct  132  D-----LSCTEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLGLAFQI  186

Query  341  VDDLLDYTVSGVELGKPAGADLELGLATAPLLFAWKQNPE----LGPLVGRKFSQEGDVQ  396
             DD LD       LGKPAG D+  G  T P++ A ++ PE    L  + G++      V+
Sbjct  187  QDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALERTPEQRKILLEIYGKRPEDVEKVK  246

Query  397  RAREI  401
             A E+
Sbjct  247  EAYEL  251



Lambda      K        H        a         alpha
   0.315    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00026627

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          247     3e-80


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 247 bits (632),  Expect = 3e-80, Method: Composition-based stats.
 Identities = 94/305 (31%), Positives = 134/305 (44%), Gaps = 59/305 (19%)

Query  102  HPTLDKVAKYYTRSEGKHMRPLLVLLMSQATALTPGKSRPNDVAPISVNDPISSPSILAD  161
               L +   Y   + GK +RPLLVLL ++A                              
Sbjct  1    EKLLYEPLDYLVSAGGKRIRPLLVLLSAEA------------------------------  30

Query  162  TNPDTNSLVSESAEAQYDFVGDENILPSQRRLAEITELIHTASLLHDDVIDNAVSRRSSN  221
                               +G    L     LA   EL+H ASL+HDD++DN+  RR   
Sbjct  31   -------------------LGGPEDLEKAIVLAWAVELLHAASLVHDDIMDNSDLRRGQP  71

Query  222  SANLQFGNKMAVLAGDFLLGRASVALARLRD-PEVTELLATVIANLVEGEFMQLKNTVAD  280
            + +  FGN +A+  GD+L   A   LA+L   PE+ EL + V     EG+ + L     D
Sbjct  72   TWHRIFGNAIAINDGDYLYALAFQLLAKLFPNPELLELFSEVTLQTAEGQGLDLLWRNDD  131

Query  281  EKNPVFTDETISYYLQKTYLKTASLISKSCRAAALLGGSAPEVVEAAYSYGRNLGLAFQL  340
            +        T   YL+    KTA L + + +  A+L G+  EV+EA   YG NLGLAFQ+
Sbjct  132  D-----LSCTEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLGLAFQI  186

Query  341  VDDLLDYTVSGVELGKPAGADLELGLATAPLLFAWKQNPE----LGPLVGRKFSQEGDVQ  396
             DD LD       LGKPAG D+  G  T P++ A ++ PE    L  + G++      V+
Sbjct  187  QDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALERTPEQRKILLEIYGKRPEDVEKVK  246

Query  397  RAREI  401
             A E+
Sbjct  247  EAYEL  251



Lambda      K        H        a         alpha
   0.315    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00021561

Length=638
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462452 pfam08375, Rpn3_C, Proteasome regulatory subunit C-ter...  99.2    4e-26
CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  89.2    6e-22


>CDD:462452 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal. 
 This eukaryotic domain is found at the C-terminus of 26S proteasome 
regulatory subunits such as the non-ATPase Rpn3 subunit 
which is essential for proteasomal function. It occurs 
together with the PCI/PINT domain (pfam01399).
Length=57

 Score = 99.2 bits (248),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 38/57 (67%), Positives = 48/57 (84%), Gaps = 1/57 (2%)

Query  564  DIYATREPGEVFHERIRACLALHDESVKAMRFPMNQHRLELKSAQEARER-ERELAK  619
            D+Y+T EP E FH+RI+ CL LH+ESVKAMR+P + H+ EL+SA+EARER ERELAK
Sbjct  1    DVYSTNEPQEAFHQRIKFCLQLHNESVKAMRYPPDAHKKELESAEEAREREERELAK  57


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 89.2 bits (222),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 36/101 (36%), Positives = 52/101 (51%), Gaps = 2/101 (2%)

Query  458  PYFLLVQAVSVGDLDGFLNIVNTHSAT-FRKDGTYTLILRLRQNVIKTGIRMMSLSYSRI  516
             Y  L++A   GDL  F  I+  +       DG    +  LR+ + +  +R +S  YS I
Sbjct  2    AYRDLLRAFYSGDLSEFEEILADYKEELLLDDGLAEHLEDLRRKIREHNLRQLSKPYSSI  61

Query  517  SLRDICLRLGLDSEESAEYIVAKAIRDGVIEATLDHEHGYM  557
            SL D+   LGL  +E  E I+AK IRDG I A +D  +G +
Sbjct  62   SLSDLAKLLGLSVDE-VEKILAKLIRDGRIRAKIDQVNGIV  101



Lambda      K        H        a         alpha
   0.315    0.130    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 803760550


Query= TCONS_00021562

Length=658
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  90.4    2e-22
CDD:462452 pfam08375, Rpn3_C, Proteasome regulatory subunit C-ter...  57.2    3e-11


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 90.4 bits (225),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 36/101 (36%), Positives = 52/101 (51%), Gaps = 2/101 (2%)

Query  482  PYFLLVQAVSVGDLDGFLNIVNTHSAT-FRKDGTYTLILRLRQNVIKTGIRMMSLSYSRI  540
             Y  L++A   GDL  F  I+  +       DG    +  LR+ + +  +R +S  YS I
Sbjct  2    AYRDLLRAFYSGDLSEFEEILADYKEELLLDDGLAEHLEDLRRKIREHNLRQLSKPYSSI  61

Query  541  SLRDICLRLGLDSEESAEYIVAKAIRDGVIEATLDHEHGYM  581
            SL D+   LGL  +E  E I+AK IRDG I A +D  +G +
Sbjct  62   SLSDLAKLLGLSVDE-VEKILAKLIRDGRIRAKIDQVNGIV  101


>CDD:462452 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal. 
 This eukaryotic domain is found at the C-terminus of 26S proteasome 
regulatory subunits such as the non-ATPase Rpn3 subunit 
which is essential for proteasomal function. It occurs 
together with the PCI/PINT domain (pfam01399).
Length=57

 Score = 57.2 bits (139),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 18/28 (64%), Positives = 23/28 (82%), Gaps = 0/28 (0%)

Query  588  DIYATREPGEVFHERIRACLALHDESVK  615
            D+Y+T EP E FH+RI+ CL LH+ESVK
Sbjct  1    DVYSTNEPQEAFHQRIKFCLQLHNESVK  28



Lambda      K        H        a         alpha
   0.316    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 833256350


Query= TCONS_00021563

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          246     1e-80


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 246 bits (630),  Expect = 1e-80, Method: Composition-based stats.
 Identities = 92/302 (30%), Positives = 131/302 (43%), Gaps = 59/302 (20%)

Query  102  HPTLDKVAKYYTRSEGKHMRPLLVLLMSQATALTPGKSRPNDVAPISVNDPISSPSILAD  161
               L +   Y   + GK +RPLLVLL ++A                              
Sbjct  1    EKLLYEPLDYLVSAGGKRIRPLLVLLSAEA------------------------------  30

Query  162  TNPDTNSLVSESAEAQYDFVGDENILPSQRRLAEITELIHTASLLHDDVIDNAVSRRSSN  221
                               +G    L     LA   EL+H ASL+HDD++DN+  RR   
Sbjct  31   -------------------LGGPEDLEKAIVLAWAVELLHAASLVHDDIMDNSDLRRGQP  71

Query  222  SANLQFGNKMAVLAGDFLLGRASVALARLRD-PEVTELLATVIANLVEGEFMQLKNTVAD  280
            + +  FGN +A+  GD+L   A   LA+L   PE+ EL + V     EG+ + L     D
Sbjct  72   TWHRIFGNAIAINDGDYLYALAFQLLAKLFPNPELLELFSEVTLQTAEGQGLDLLWRNDD  131

Query  281  EKNPVFTDETISYYLQKTYLKTASLISKSCRAAALLGGSAPEVVEAAYSYGRNLGLAFQL  340
            +        T   YL+    KTA L + + +  A+L G+  EV+EA   YG NLGLAFQ+
Sbjct  132  D-----LSCTEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLGLAFQI  186

Query  341  VDDLLDYTVSGVELGKPAGADLELGLATAPLLFAWKQNPE----LGPLVGRKFSQEGDVQ  396
             DD LD       LGKPAG D+  G  T P++ A ++ PE    L  + G++      V+
Sbjct  187  QDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALERTPEQRKILLEIYGKRPEDVEKVK  246

Query  397  RV  398
              
Sbjct  247  EA  248



Lambda      K        H        a         alpha
   0.315    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00026628

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462452 pfam08375, Rpn3_C, Proteasome regulatory subunit C-ter...  99.2    4e-26
CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  88.8    9e-22


>CDD:462452 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal. 
 This eukaryotic domain is found at the C-terminus of 26S proteasome 
regulatory subunits such as the non-ATPase Rpn3 subunit 
which is essential for proteasomal function. It occurs 
together with the PCI/PINT domain (pfam01399).
Length=57

 Score = 99.2 bits (248),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 38/57 (67%), Positives = 48/57 (84%), Gaps = 1/57 (2%)

Query  542  DIYATREPGEVFHERIRACLALHDESVKAMRFPMNQHRLELKSAQEARER-ERELAK  597
            D+Y+T EP E FH+RI+ CL LH+ESVKAMR+P + H+ EL+SA+EARER ERELAK
Sbjct  1    DVYSTNEPQEAFHQRIKFCLQLHNESVKAMRYPPDAHKKELESAEEAREREERELAK  57


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 88.8 bits (221),  Expect = 9e-22, Method: Composition-based stats.
 Identities = 36/101 (36%), Positives = 52/101 (51%), Gaps = 2/101 (2%)

Query  436  PYFLLVQAVSVGDLDGFLNIVNTHSAT-FRKDGTYTLILRLRQNVIKTGIRMMSLSYSRI  494
             Y  L++A   GDL  F  I+  +       DG    +  LR+ + +  +R +S  YS I
Sbjct  2    AYRDLLRAFYSGDLSEFEEILADYKEELLLDDGLAEHLEDLRRKIREHNLRQLSKPYSSI  61

Query  495  SLRDICLRLGLDSEESAEYIVAKAIRDGVIEATLDHEHGYM  535
            SL D+   LGL  +E  E I+AK IRDG I A +D  +G +
Sbjct  62   SLSDLAKLLGLSVDE-VEKILAKLIRDGRIRAKIDQVNGIV  101



Lambda      K        H        a         alpha
   0.315    0.130    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 783080272


Query= TCONS_00026629

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          247     3e-80


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 247 bits (632),  Expect = 3e-80, Method: Composition-based stats.
 Identities = 94/305 (31%), Positives = 134/305 (44%), Gaps = 59/305 (19%)

Query  102  HPTLDKVAKYYTRSEGKHMRPLLVLLMSQATALTPGKSRPNDVAPISVNDPISSPSILAD  161
               L +   Y   + GK +RPLLVLL ++A                              
Sbjct  1    EKLLYEPLDYLVSAGGKRIRPLLVLLSAEA------------------------------  30

Query  162  TNPDTNSLVSESAEAQYDFVGDENILPSQRRLAEITELIHTASLLHDDVIDNAVSRRSSN  221
                               +G    L     LA   EL+H ASL+HDD++DN+  RR   
Sbjct  31   -------------------LGGPEDLEKAIVLAWAVELLHAASLVHDDIMDNSDLRRGQP  71

Query  222  SANLQFGNKMAVLAGDFLLGRASVALARLRD-PEVTELLATVIANLVEGEFMQLKNTVAD  280
            + +  FGN +A+  GD+L   A   LA+L   PE+ EL + V     EG+ + L     D
Sbjct  72   TWHRIFGNAIAINDGDYLYALAFQLLAKLFPNPELLELFSEVTLQTAEGQGLDLLWRNDD  131

Query  281  EKNPVFTDETISYYLQKTYLKTASLISKSCRAAALLGGSAPEVVEAAYSYGRNLGLAFQL  340
            +        T   YL+    KTA L + + +  A+L G+  EV+EA   YG NLGLAFQ+
Sbjct  132  D-----LSCTEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLGLAFQI  186

Query  341  VDDLLDYTVSGVELGKPAGADLELGLATAPLLFAWKQNPE----LGPLVGRKFSQEGDVQ  396
             DD LD       LGKPAG D+  G  T P++ A ++ PE    L  + G++      V+
Sbjct  187  QDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALERTPEQRKILLEIYGKRPEDVEKVK  246

Query  397  RAREI  401
             A E+
Sbjct  247  EAYEL  251



Lambda      K        H        a         alpha
   0.315    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00026630

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462452 pfam08375, Rpn3_C, Proteasome regulatory subunit C-ter...  99.2    4e-26
CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  88.4    9e-22


>CDD:462452 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal. 
 This eukaryotic domain is found at the C-terminus of 26S proteasome 
regulatory subunits such as the non-ATPase Rpn3 subunit 
which is essential for proteasomal function. It occurs 
together with the PCI/PINT domain (pfam01399).
Length=57

 Score = 99.2 bits (248),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 38/57 (67%), Positives = 48/57 (84%), Gaps = 1/57 (2%)

Query  523  DIYATREPGEVFHERIRACLALHDESVKAMRFPMNQHRLELKSAQEARER-ERELAK  578
            D+Y+T EP E FH+RI+ CL LH+ESVKAMR+P + H+ EL+SA+EARER ERELAK
Sbjct  1    DVYSTNEPQEAFHQRIKFCLQLHNESVKAMRYPPDAHKKELESAEEAREREERELAK  57


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 88.4 bits (220),  Expect = 9e-22, Method: Composition-based stats.
 Identities = 36/101 (36%), Positives = 52/101 (51%), Gaps = 2/101 (2%)

Query  417  PYFLLVQAVSVGDLDGFLNIVNTHSAT-FRKDGTYTLILRLRQNVIKTGIRMMSLSYSRI  475
             Y  L++A   GDL  F  I+  +       DG    +  LR+ + +  +R +S  YS I
Sbjct  2    AYRDLLRAFYSGDLSEFEEILADYKEELLLDDGLAEHLEDLRRKIREHNLRQLSKPYSSI  61

Query  476  SLRDICLRLGLDSEESAEYIVAKAIRDGVIEATLDHEHGYM  516
            SL D+   LGL  +E  E I+AK IRDG I A +D  +G +
Sbjct  62   SLSDLAKLLGLSVDE-VEKILAKLIRDGRIRAKIDQVNGIV  101



Lambda      K        H        a         alpha
   0.316    0.131    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 754686140


Query= TCONS_00026632

Length=503
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462452 pfam08375, Rpn3_C, Proteasome regulatory subunit C-ter...  100     1e-26
CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  85.7    7e-21


>CDD:462452 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal. 
 This eukaryotic domain is found at the C-terminus of 26S proteasome 
regulatory subunits such as the non-ATPase Rpn3 subunit 
which is essential for proteasomal function. It occurs 
together with the PCI/PINT domain (pfam01399).
Length=57

 Score = 100 bits (251),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 38/57 (67%), Positives = 48/57 (84%), Gaps = 1/57 (2%)

Query  429  DIYATREPGEVFHERIRACLALHDESVKAMRFPMNQHRLELKSAQEARER-ERELAK  484
            D+Y+T EP E FH+RI+ CL LH+ESVKAMR+P + H+ EL+SA+EARER ERELAK
Sbjct  1    DVYSTNEPQEAFHQRIKFCLQLHNESVKAMRYPPDAHKKELESAEEAREREERELAK  57


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 85.7 bits (213),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 36/101 (36%), Positives = 52/101 (51%), Gaps = 2/101 (2%)

Query  323  PYFLLVQAVSVGDLDGFLNIVNTHSAT-FRKDGTYTLILRLRQNVIKTGIRMMSLSYSRI  381
             Y  L++A   GDL  F  I+  +       DG    +  LR+ + +  +R +S  YS I
Sbjct  2    AYRDLLRAFYSGDLSEFEEILADYKEELLLDDGLAEHLEDLRRKIREHNLRQLSKPYSSI  61

Query  382  SLRDICLRLGLDSEESAEYIVAKAIRDGVIEATLDHEHGYM  422
            SL D+   LGL  +E  E I+AK IRDG I A +D  +G +
Sbjct  62   SLSDLAKLLGLSVDE-VEKILAKLIRDGRIRAKIDQVNGIV  101



Lambda      K        H        a         alpha
   0.321    0.135    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 623795192


Query= TCONS_00026631

Length=619
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462452 pfam08375, Rpn3_C, Proteasome regulatory subunit C-ter...  99.6    3e-26
CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  89.2    5e-22


>CDD:462452 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal. 
 This eukaryotic domain is found at the C-terminus of 26S proteasome 
regulatory subunits such as the non-ATPase Rpn3 subunit 
which is essential for proteasomal function. It occurs 
together with the PCI/PINT domain (pfam01399).
Length=57

 Score = 99.6 bits (249),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 38/57 (67%), Positives = 48/57 (84%), Gaps = 1/57 (2%)

Query  545  DIYATREPGEVFHERIRACLALHDESVKAMRFPMNQHRLELKSAQEARER-ERELAK  600
            D+Y+T EP E FH+RI+ CL LH+ESVKAMR+P + H+ EL+SA+EARER ERELAK
Sbjct  1    DVYSTNEPQEAFHQRIKFCLQLHNESVKAMRYPPDAHKKELESAEEAREREERELAK  57


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 89.2 bits (222),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 36/101 (36%), Positives = 52/101 (51%), Gaps = 2/101 (2%)

Query  439  PYFLLVQAVSVGDLDGFLNIVNTHSAT-FRKDGTYTLILRLRQNVIKTGIRMMSLSYSRI  497
             Y  L++A   GDL  F  I+  +       DG    +  LR+ + +  +R +S  YS I
Sbjct  2    AYRDLLRAFYSGDLSEFEEILADYKEELLLDDGLAEHLEDLRRKIREHNLRQLSKPYSSI  61

Query  498  SLRDICLRLGLDSEESAEYIVAKAIRDGVIEATLDHEHGYM  538
            SL D+   LGL  +E  E I+AK IRDG I A +D  +G +
Sbjct  62   SLSDLAKLLGLSVDE-VEKILAKLIRDGRIRAKIDQVNGIV  101



Lambda      K        H        a         alpha
   0.315    0.131    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787563556


Query= TCONS_00021564

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462452 pfam08375, Rpn3_C, Proteasome regulatory subunit C-ter...  99.2    4e-26
CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  88.4    1e-21


>CDD:462452 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal. 
 This eukaryotic domain is found at the C-terminus of 26S proteasome 
regulatory subunits such as the non-ATPase Rpn3 subunit 
which is essential for proteasomal function. It occurs 
together with the PCI/PINT domain (pfam01399).
Length=57

 Score = 99.2 bits (248),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 38/57 (67%), Positives = 48/57 (84%), Gaps = 1/57 (2%)

Query  522  DIYATREPGEVFHERIRACLALHDESVKAMRFPMNQHRLELKSAQEARER-ERELAK  577
            D+Y+T EP E FH+RI+ CL LH+ESVKAMR+P + H+ EL+SA+EARER ERELAK
Sbjct  1    DVYSTNEPQEAFHQRIKFCLQLHNESVKAMRYPPDAHKKELESAEEAREREERELAK  57


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 88.4 bits (220),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 36/101 (36%), Positives = 52/101 (51%), Gaps = 2/101 (2%)

Query  416  PYFLLVQAVSVGDLDGFLNIVNTHSAT-FRKDGTYTLILRLRQNVIKTGIRMMSLSYSRI  474
             Y  L++A   GDL  F  I+  +       DG    +  LR+ + +  +R +S  YS I
Sbjct  2    AYRDLLRAFYSGDLSEFEEILADYKEELLLDDGLAEHLEDLRRKIREHNLRQLSKPYSSI  61

Query  475  SLRDICLRLGLDSEESAEYIVAKAIRDGVIEATLDHEHGYM  515
            SL D+   LGL  +E  E I+AK IRDG I A +D  +G +
Sbjct  62   SLSDLAKLLGLSVDE-VEKILAKLIRDGRIRAKIDQVNGIV  101



Lambda      K        H        a         alpha
   0.316    0.131    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 753191712


Query= TCONS_00026633

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          247     3e-80


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 247 bits (632),  Expect = 3e-80, Method: Composition-based stats.
 Identities = 94/305 (31%), Positives = 134/305 (44%), Gaps = 59/305 (19%)

Query  102  HPTLDKVAKYYTRSEGKHMRPLLVLLMSQATALTPGKSRPNDVAPISVNDPISSPSILAD  161
               L +   Y   + GK +RPLLVLL ++A                              
Sbjct  1    EKLLYEPLDYLVSAGGKRIRPLLVLLSAEA------------------------------  30

Query  162  TNPDTNSLVSESAEAQYDFVGDENILPSQRRLAEITELIHTASLLHDDVIDNAVSRRSSN  221
                               +G    L     LA   EL+H ASL+HDD++DN+  RR   
Sbjct  31   -------------------LGGPEDLEKAIVLAWAVELLHAASLVHDDIMDNSDLRRGQP  71

Query  222  SANLQFGNKMAVLAGDFLLGRASVALARLRD-PEVTELLATVIANLVEGEFMQLKNTVAD  280
            + +  FGN +A+  GD+L   A   LA+L   PE+ EL + V     EG+ + L     D
Sbjct  72   TWHRIFGNAIAINDGDYLYALAFQLLAKLFPNPELLELFSEVTLQTAEGQGLDLLWRNDD  131

Query  281  EKNPVFTDETISYYLQKTYLKTASLISKSCRAAALLGGSAPEVVEAAYSYGRNLGLAFQL  340
            +        T   YL+    KTA L + + +  A+L G+  EV+EA   YG NLGLAFQ+
Sbjct  132  D-----LSCTEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLGLAFQI  186

Query  341  VDDLLDYTVSGVELGKPAGADLELGLATAPLLFAWKQNPE----LGPLVGRKFSQEGDVQ  396
             DD LD       LGKPAG D+  G  T P++ A ++ PE    L  + G++      V+
Sbjct  187  QDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALERTPEQRKILLEIYGKRPEDVEKVK  246

Query  397  RAREI  401
             A E+
Sbjct  247  EAYEL  251



Lambda      K        H        a         alpha
   0.315    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00021566

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          246     1e-80


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 246 bits (630),  Expect = 1e-80, Method: Composition-based stats.
 Identities = 92/302 (30%), Positives = 131/302 (43%), Gaps = 59/302 (20%)

Query  102  HPTLDKVAKYYTRSEGKHMRPLLVLLMSQATALTPGKSRPNDVAPISVNDPISSPSILAD  161
               L +   Y   + GK +RPLLVLL ++A                              
Sbjct  1    EKLLYEPLDYLVSAGGKRIRPLLVLLSAEA------------------------------  30

Query  162  TNPDTNSLVSESAEAQYDFVGDENILPSQRRLAEITELIHTASLLHDDVIDNAVSRRSSN  221
                               +G    L     LA   EL+H ASL+HDD++DN+  RR   
Sbjct  31   -------------------LGGPEDLEKAIVLAWAVELLHAASLVHDDIMDNSDLRRGQP  71

Query  222  SANLQFGNKMAVLAGDFLLGRASVALARLRD-PEVTELLATVIANLVEGEFMQLKNTVAD  280
            + +  FGN +A+  GD+L   A   LA+L   PE+ EL + V     EG+ + L     D
Sbjct  72   TWHRIFGNAIAINDGDYLYALAFQLLAKLFPNPELLELFSEVTLQTAEGQGLDLLWRNDD  131

Query  281  EKNPVFTDETISYYLQKTYLKTASLISKSCRAAALLGGSAPEVVEAAYSYGRNLGLAFQL  340
            +        T   YL+    KTA L + + +  A+L G+  EV+EA   YG NLGLAFQ+
Sbjct  132  D-----LSCTEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLGLAFQI  186

Query  341  VDDLLDYTVSGVELGKPAGADLELGLATAPLLFAWKQNPE----LGPLVGRKFSQEGDVQ  396
             DD LD       LGKPAG D+  G  T P++ A ++ PE    L  + G++      V+
Sbjct  187  QDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALERTPEQRKILLEIYGKRPEDVEKVK  246

Query  397  RV  398
              
Sbjct  247  EA  248



Lambda      K        H        a         alpha
   0.315    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00021567

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          247     3e-80


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 247 bits (632),  Expect = 3e-80, Method: Composition-based stats.
 Identities = 94/305 (31%), Positives = 134/305 (44%), Gaps = 59/305 (19%)

Query  102  HPTLDKVAKYYTRSEGKHMRPLLVLLMSQATALTPGKSRPNDVAPISVNDPISSPSILAD  161
               L +   Y   + GK +RPLLVLL ++A                              
Sbjct  1    EKLLYEPLDYLVSAGGKRIRPLLVLLSAEA------------------------------  30

Query  162  TNPDTNSLVSESAEAQYDFVGDENILPSQRRLAEITELIHTASLLHDDVIDNAVSRRSSN  221
                               +G    L     LA   EL+H ASL+HDD++DN+  RR   
Sbjct  31   -------------------LGGPEDLEKAIVLAWAVELLHAASLVHDDIMDNSDLRRGQP  71

Query  222  SANLQFGNKMAVLAGDFLLGRASVALARLRD-PEVTELLATVIANLVEGEFMQLKNTVAD  280
            + +  FGN +A+  GD+L   A   LA+L   PE+ EL + V     EG+ + L     D
Sbjct  72   TWHRIFGNAIAINDGDYLYALAFQLLAKLFPNPELLELFSEVTLQTAEGQGLDLLWRNDD  131

Query  281  EKNPVFTDETISYYLQKTYLKTASLISKSCRAAALLGGSAPEVVEAAYSYGRNLGLAFQL  340
            +        T   YL+    KTA L + + +  A+L G+  EV+EA   YG NLGLAFQ+
Sbjct  132  D-----LSCTEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLGLAFQI  186

Query  341  VDDLLDYTVSGVELGKPAGADLELGLATAPLLFAWKQNPE----LGPLVGRKFSQEGDVQ  396
             DD LD       LGKPAG D+  G  T P++ A ++ PE    L  + G++      V+
Sbjct  187  QDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALERTPEQRKILLEIYGKRPEDVEKVK  246

Query  397  RAREI  401
             A E+
Sbjct  247  EAYEL  251



Lambda      K        H        a         alpha
   0.315    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00026634

Length=770


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 983682752


Query= TCONS_00021569

Length=920


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0571    0.140     1.90     42.6     43.6 

Effective search space used: 1184299050


Query= TCONS_00026635

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain. I/LWEQ domains bind ...  209     7e-68


>CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain.  I/LWEQ domains bind to actin. 
It has been shown that the I/LWEQ domains from mouse talin 
and yeast Sla2p interact with F-actin. I/LWEQ domains can 
be placed into four major groups based on sequence similarity: 
(1) Metazoan talin; (2) Dictyostelium TalA/TalB and SLA110; 
(3) metazoan Hip1p and (4) yeast Sla2p. The domain has four 
conserved blocks, the name of the domain is derived from 
the initial conserved amino acid of each of the four blocks.
Length=149

 Score = 209 bits (534),  Expect = 7e-68, Method: Composition-based stats.
 Identities = 90/149 (60%), Positives = 109/149 (73%), Gaps = 0/149 (0%)

Query  234  KNNRWTEGLISAAKAVATSTNTLIETADGVISGRNSPEQLIVASNDVAASTAQLVAASRV  293
            KNNRWTEGLISAAKAVA +TN L+E ADGV+ G+ S E+LIVA+ +VAASTAQLVAASRV
Sbjct  1    KNNRWTEGLISAAKAVAAATNLLVEAADGVVQGQGSEEELIVAAKEVAASTAQLVAASRV  60

Query  294  KATFMSKTQDRLEAASKAVGAACRALVRQVQDIIAECNRDEGETVDYAKLSSHEFKVREM  353
            KA   SKTQ RLEAASKAV  A + LV  V+        +  E +D++KLS H+ K +EM
Sbjct  61   KADPNSKTQQRLEAASKAVTDATKNLVAAVKSAAELQEEEIEEEMDFSKLSLHQAKRQEM  120

Query  354  EQQVEILQLENSLARARQRLGEMRKISYQ  382
            E QVEIL+LE  L  AR++L E+RK  Y 
Sbjct  121  EAQVEILKLEKELEEARKKLAEIRKAHYH  149



Lambda      K        H        a         alpha
   0.312    0.124    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00021570

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain. I/LWEQ domains bind ...  209     7e-68


>CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain.  I/LWEQ domains bind to actin. 
It has been shown that the I/LWEQ domains from mouse talin 
and yeast Sla2p interact with F-actin. I/LWEQ domains can 
be placed into four major groups based on sequence similarity: 
(1) Metazoan talin; (2) Dictyostelium TalA/TalB and SLA110; 
(3) metazoan Hip1p and (4) yeast Sla2p. The domain has four 
conserved blocks, the name of the domain is derived from 
the initial conserved amino acid of each of the four blocks.
Length=149

 Score = 209 bits (534),  Expect = 7e-68, Method: Composition-based stats.
 Identities = 90/149 (60%), Positives = 109/149 (73%), Gaps = 0/149 (0%)

Query  234  KNNRWTEGLISAAKAVATSTNTLIETADGVISGRNSPEQLIVASNDVAASTAQLVAASRV  293
            KNNRWTEGLISAAKAVA +TN L+E ADGV+ G+ S E+LIVA+ +VAASTAQLVAASRV
Sbjct  1    KNNRWTEGLISAAKAVAAATNLLVEAADGVVQGQGSEEELIVAAKEVAASTAQLVAASRV  60

Query  294  KATFMSKTQDRLEAASKAVGAACRALVRQVQDIIAECNRDEGETVDYAKLSSHEFKVREM  353
            KA   SKTQ RLEAASKAV  A + LV  V+        +  E +D++KLS H+ K +EM
Sbjct  61   KADPNSKTQQRLEAASKAVTDATKNLVAAVKSAAELQEEEIEEEMDFSKLSLHQAKRQEM  120

Query  354  EQQVEILQLENSLARARQRLGEMRKISYQ  382
            E QVEIL+LE  L  AR++L E+RK  Y 
Sbjct  121  EAQVEILKLEKELEEARKKLAEIRKAHYH  149



Lambda      K        H        a         alpha
   0.312    0.124    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00026636

Length=1043
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400137 pfam07651, ANTH, ANTH domain. AP180 is an endocytotic ...  300     6e-95
CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain. I/LWEQ domains bind ...  215     2e-65


>CDD:400137 pfam07651, ANTH, ANTH domain.  AP180 is an endocytotic accessory 
proteins that has been implicated in the formation of clathrin-coated 
pits. The domain is involved in phosphatidylinositol 
4,5-bisphosphate binding and is a universal adaptor for 
nucleation of clathrin coats.
Length=272

 Score = 300 bits (771),  Expect = 6e-95, Method: Composition-based stats.
 Identities = 106/272 (39%), Positives = 143/272 (53%), Gaps = 13/272 (5%)

Query  7    DLAINIRKATSIEETAPKRKHVRSCIVYTWD-HKSSAAFWAGMKVQPVLADEVQTFKALI  65
            DL + + KATS +E  PK KHVR  +V T    K +A FWA  +  P+    V  FKALI
Sbjct  1    DLEVAVVKATSHDEAPPKEKHVREILVGTSSSAKLAALFWALSRRLPLTRSWVVAFKALI  60

Query  66   TIHKVLQEGHPIVVREAQQHVNWIDSLMRGVGGDGIRGYGPLIREYVFFLESKLAFHRNH  125
             +HK+L+EGHP V++E  +    I SL+R         YG  IR Y  +L+ +L FHR  
Sbjct  61   LVHKLLREGHPSVLQELLRARRRISSLLRISSFSLSWDYGAFIRAYAKYLDERLDFHRKL  120

Query  126  PEFNGLFEYEEYISLKTINDPNEGYETITDLMTLQDQIDTFQKLIFSHFQ-----SGTNN  180
            P   G FE  EY SL  + DPNE Y T   +  L D I   QKL+F   +     +  +N
Sbjct  121  PRDPGTFERVEYGSLVAVGDPNERYLT-MSMEDLLDSIPKLQKLLFRLLKCRPTGNALSN  179

Query  181  ECRISALVPLVQESYGIYKFITSMLRAMHTTTG-----DNEALEPLRGRYDAQHYRLVRF  235
            EC I+AL+ LV+ES+G+Y+ I   +  +          D +    +  R+  Q  RL  F
Sbjct  180  ECIIAALILLVKESFGLYRAINEGIINLLEKFFELSKPDADRALGIYKRFVKQFERLKEF  239

Query  236  YYECSNLRYLTSLITVPKLPQDPPSLLAEDED  267
            Y  C NL Y  SL  +PKLP  PP+LL   E+
Sbjct  240  YEVCKNLGYFRSLE-IPKLPHIPPNLLEALEE  270


>CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain.  I/LWEQ domains bind to actin. 
It has been shown that the I/LWEQ domains from mouse talin 
and yeast Sla2p interact with F-actin. I/LWEQ domains can 
be placed into four major groups based on sequence similarity: 
(1) Metazoan talin; (2) Dictyostelium TalA/TalB and SLA110; 
(3) metazoan Hip1p and (4) yeast Sla2p. The domain has four 
conserved blocks, the name of the domain is derived from 
the initial conserved amino acid of each of the four blocks.
Length=149

 Score = 215 bits (549),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 90/149 (60%), Positives = 109/149 (73%), Gaps = 0/149 (0%)

Query  893   KNNRWTEGLISAAKAVATSTNTLIETADGVISGRNSPEQLIVASNDVAASTAQLVAASRV  952
             KNNRWTEGLISAAKAVA +TN L+E ADGV+ G+ S E+LIVA+ +VAASTAQLVAASRV
Sbjct  1     KNNRWTEGLISAAKAVAAATNLLVEAADGVVQGQGSEEELIVAAKEVAASTAQLVAASRV  60

Query  953   KATFMSKTQDRLEAASKAVGAACRALVRQVQDIIAECNRDEGETVDYAKLSSHEFKVREM  1012
             KA   SKTQ RLEAASKAV  A + LV  V+        +  E +D++KLS H+ K +EM
Sbjct  61    KADPNSKTQQRLEAASKAVTDATKNLVAAVKSAAELQEEEIEEEMDFSKLSLHQAKRQEM  120

Query  1013  EQQVEILQLENSLARARQRLGEMRKISYQ  1041
             E QVEIL+LE  L  AR++L E+RK  Y 
Sbjct  121   EAQVEILKLEKELEEARKKLAEIRKAHYH  149



Lambda      K        H        a         alpha
   0.313    0.128    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1340834572


Query= TCONS_00026637

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain. I/LWEQ domains bind ...  209     7e-68


>CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain.  I/LWEQ domains bind to actin. 
It has been shown that the I/LWEQ domains from mouse talin 
and yeast Sla2p interact with F-actin. I/LWEQ domains can 
be placed into four major groups based on sequence similarity: 
(1) Metazoan talin; (2) Dictyostelium TalA/TalB and SLA110; 
(3) metazoan Hip1p and (4) yeast Sla2p. The domain has four 
conserved blocks, the name of the domain is derived from 
the initial conserved amino acid of each of the four blocks.
Length=149

 Score = 209 bits (534),  Expect = 7e-68, Method: Composition-based stats.
 Identities = 90/149 (60%), Positives = 109/149 (73%), Gaps = 0/149 (0%)

Query  234  KNNRWTEGLISAAKAVATSTNTLIETADGVISGRNSPEQLIVASNDVAASTAQLVAASRV  293
            KNNRWTEGLISAAKAVA +TN L+E ADGV+ G+ S E+LIVA+ +VAASTAQLVAASRV
Sbjct  1    KNNRWTEGLISAAKAVAAATNLLVEAADGVVQGQGSEEELIVAAKEVAASTAQLVAASRV  60

Query  294  KATFMSKTQDRLEAASKAVGAACRALVRQVQDIIAECNRDEGETVDYAKLSSHEFKVREM  353
            KA   SKTQ RLEAASKAV  A + LV  V+        +  E +D++KLS H+ K +EM
Sbjct  61   KADPNSKTQQRLEAASKAVTDATKNLVAAVKSAAELQEEEIEEEMDFSKLSLHQAKRQEM  120

Query  354  EQQVEILQLENSLARARQRLGEMRKISYQ  382
            E QVEIL+LE  L  AR++L E+RK  Y 
Sbjct  121  EAQVEILKLEKELEEARKKLAEIRKAHYH  149



Lambda      K        H        a         alpha
   0.312    0.124    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00026639

Length=996
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400137 pfam07651, ANTH, ANTH domain. AP180 is an endocytotic ...  241     3e-73
CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain. I/LWEQ domains bind ...  214     2e-65


>CDD:400137 pfam07651, ANTH, ANTH domain.  AP180 is an endocytotic accessory 
proteins that has been implicated in the formation of clathrin-coated 
pits. The domain is involved in phosphatidylinositol 
4,5-bisphosphate binding and is a universal adaptor for 
nucleation of clathrin coats.
Length=272

 Score = 241 bits (616),  Expect = 3e-73, Method: Composition-based stats.
 Identities = 86/230 (37%), Positives = 118/230 (51%), Gaps = 12/230 (5%)

Query  1    MKVQPVLADEVQTFKALITIHKVLQEGHPIVVREAQQHVNWIDSLMRGVGGDGIRGYGPL  60
             +  P+    V  FKALI +HK+L+EGHP V++E  +    I SL+R         YG  
Sbjct  43   SRRLPLTRSWVVAFKALILVHKLLREGHPSVLQELLRARRRISSLLRISSFSLSWDYGAF  102

Query  61   IREYVFFLESKLAFHRNHPEFNGLFEYEEYISLKTINDPNEGYETITDLMTLQDQIDTFQ  120
            IR Y  +L+ +L FHR  P   G FE  EY SL  + DPNE Y T   +  L D I   Q
Sbjct  103  IRAYAKYLDERLDFHRKLPRDPGTFERVEYGSLVAVGDPNERYLT-MSMEDLLDSIPKLQ  161

Query  121  KLIFSHFQ-----SGTNNECRISALVPLVQESYGIYKFITSMLRAMHTTTG-----DNEA  170
            KL+F   +     +  +NEC I+AL+ LV+ES+G+Y+ I   +  +          D + 
Sbjct  162  KLLFRLLKCRPTGNALSNECIIAALILLVKESFGLYRAINEGIINLLEKFFELSKPDADR  221

Query  171  LEPLRGRYDAQHYRLVRFYYECSNLRYLTSLITVPKLPQDPPSLLAEDED  220
               +  R+  Q  RL  FY  C NL Y  SL  +PKLP  PP+LL   E+
Sbjct  222  ALGIYKRFVKQFERLKEFYEVCKNLGYFRSLE-IPKLPHIPPNLLEALEE  270


>CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain.  I/LWEQ domains bind to actin. 
It has been shown that the I/LWEQ domains from mouse talin 
and yeast Sla2p interact with F-actin. I/LWEQ domains can 
be placed into four major groups based on sequence similarity: 
(1) Metazoan talin; (2) Dictyostelium TalA/TalB and SLA110; 
(3) metazoan Hip1p and (4) yeast Sla2p. The domain has four 
conserved blocks, the name of the domain is derived from 
the initial conserved amino acid of each of the four blocks.
Length=149

 Score = 214 bits (548),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 90/149 (60%), Positives = 109/149 (73%), Gaps = 0/149 (0%)

Query  846  KNNRWTEGLISAAKAVATSTNTLIETADGVISGRNSPEQLIVASNDVAASTAQLVAASRV  905
            KNNRWTEGLISAAKAVA +TN L+E ADGV+ G+ S E+LIVA+ +VAASTAQLVAASRV
Sbjct  1    KNNRWTEGLISAAKAVAAATNLLVEAADGVVQGQGSEEELIVAAKEVAASTAQLVAASRV  60

Query  906  KATFMSKTQDRLEAASKAVGAACRALVRQVQDIIAECNRDEGETVDYAKLSSHEFKVREM  965
            KA   SKTQ RLEAASKAV  A + LV  V+        +  E +D++KLS H+ K +EM
Sbjct  61   KADPNSKTQQRLEAASKAVTDATKNLVAAVKSAAELQEEEIEEEMDFSKLSLHQAKRQEM  120

Query  966  EQQVEILQLENSLARARQRLGEMRKISYQ  994
            E QVEIL+LE  L  AR++L E+RK  Y 
Sbjct  121  EAQVEILKLEKELEEARKKLAEIRKAHYH  149



Lambda      K        H        a         alpha
   0.313    0.128    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1274288400


Query= TCONS_00026638

Length=951
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain. I/LWEQ domains bind ...  214     2e-65
CDD:400137 pfam07651, ANTH, ANTH domain. AP180 is an endocytotic ...  188     3e-54


>CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain.  I/LWEQ domains bind to actin. 
It has been shown that the I/LWEQ domains from mouse talin 
and yeast Sla2p interact with F-actin. I/LWEQ domains can 
be placed into four major groups based on sequence similarity: 
(1) Metazoan talin; (2) Dictyostelium TalA/TalB and SLA110; 
(3) metazoan Hip1p and (4) yeast Sla2p. The domain has four 
conserved blocks, the name of the domain is derived from 
the initial conserved amino acid of each of the four blocks.
Length=149

 Score = 214 bits (547),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 90/149 (60%), Positives = 109/149 (73%), Gaps = 0/149 (0%)

Query  801  KNNRWTEGLISAAKAVATSTNTLIETADGVISGRNSPEQLIVASNDVAASTAQLVAASRV  860
            KNNRWTEGLISAAKAVA +TN L+E ADGV+ G+ S E+LIVA+ +VAASTAQLVAASRV
Sbjct  1    KNNRWTEGLISAAKAVAAATNLLVEAADGVVQGQGSEEELIVAAKEVAASTAQLVAASRV  60

Query  861  KATFMSKTQDRLEAASKAVGAACRALVRQVQDIIAECNRDEGETVDYAKLSSHEFKVREM  920
            KA   SKTQ RLEAASKAV  A + LV  V+        +  E +D++KLS H+ K +EM
Sbjct  61   KADPNSKTQQRLEAASKAVTDATKNLVAAVKSAAELQEEEIEEEMDFSKLSLHQAKRQEM  120

Query  921  EQQVEILQLENSLARARQRLGEMRKISYQ  949
            E QVEIL+LE  L  AR++L E+RK  Y 
Sbjct  121  EAQVEILKLEKELEEARKKLAEIRKAHYH  149


>CDD:400137 pfam07651, ANTH, ANTH domain.  AP180 is an endocytotic accessory 
proteins that has been implicated in the formation of clathrin-coated 
pits. The domain is involved in phosphatidylinositol 
4,5-bisphosphate binding and is a universal adaptor for 
nucleation of clathrin coats.
Length=272

 Score = 188 bits (479),  Expect = 3e-54, Method: Composition-based stats.
 Identities = 66/176 (38%), Positives = 89/176 (51%), Gaps = 12/176 (7%)

Query  10   RGYGPLIREYVFFLESKLAFHRNHPEFNGLFEYEEYISLKTINDPNEGYETITDLMTLQD  69
              YG  IR Y  +L+ +L FHR  P   G FE  EY SL  + DPNE Y T   +  L D
Sbjct  97   WDYGAFIRAYAKYLDERLDFHRKLPRDPGTFERVEYGSLVAVGDPNERYLT-MSMEDLLD  155

Query  70   QIDTFQKLIFSHFQ-----SGTNNECRISALVPLVQESYGIYKFITSMLRAMHTTTG---  121
             I   QKL+F   +     +  +NEC I+AL+ LV+ES+G+Y+ I   +  +        
Sbjct  156  SIPKLQKLLFRLLKCRPTGNALSNECIIAALILLVKESFGLYRAINEGIINLLEKFFELS  215

Query  122  --DNEALEPLRGRYDAQHYRLVRFYYECSNLRYLTSLITVPKLPQDPPSLLAEDED  175
              D +    +  R+  Q  RL  FY  C NL Y  SL  +PKLP  PP+LL   E+
Sbjct  216  KPDADRALGIYKRFVKQFERLKEFYEVCKNLGYFRSLE-IPKLPHIPPNLLEALEE  270



Lambda      K        H        a         alpha
   0.312    0.128    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1210573980


Query= TCONS_00021571

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain. I/LWEQ domains bind ...  209     7e-68


>CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain.  I/LWEQ domains bind to actin. 
It has been shown that the I/LWEQ domains from mouse talin 
and yeast Sla2p interact with F-actin. I/LWEQ domains can 
be placed into four major groups based on sequence similarity: 
(1) Metazoan talin; (2) Dictyostelium TalA/TalB and SLA110; 
(3) metazoan Hip1p and (4) yeast Sla2p. The domain has four 
conserved blocks, the name of the domain is derived from 
the initial conserved amino acid of each of the four blocks.
Length=149

 Score = 209 bits (534),  Expect = 7e-68, Method: Composition-based stats.
 Identities = 90/149 (60%), Positives = 109/149 (73%), Gaps = 0/149 (0%)

Query  234  KNNRWTEGLISAAKAVATSTNTLIETADGVISGRNSPEQLIVASNDVAASTAQLVAASRV  293
            KNNRWTEGLISAAKAVA +TN L+E ADGV+ G+ S E+LIVA+ +VAASTAQLVAASRV
Sbjct  1    KNNRWTEGLISAAKAVAAATNLLVEAADGVVQGQGSEEELIVAAKEVAASTAQLVAASRV  60

Query  294  KATFMSKTQDRLEAASKAVGAACRALVRQVQDIIAECNRDEGETVDYAKLSSHEFKVREM  353
            KA   SKTQ RLEAASKAV  A + LV  V+        +  E +D++KLS H+ K +EM
Sbjct  61   KADPNSKTQQRLEAASKAVTDATKNLVAAVKSAAELQEEEIEEEMDFSKLSLHQAKRQEM  120

Query  354  EQQVEILQLENSLARARQRLGEMRKISYQ  382
            E QVEIL+LE  L  AR++L E+RK  Y 
Sbjct  121  EAQVEILKLEKELEEARKKLAEIRKAHYH  149



Lambda      K        H        a         alpha
   0.312    0.124    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00021572

Length=745
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400137 pfam07651, ANTH, ANTH domain. AP180 is an endocytotic ...  298     1e-96


>CDD:400137 pfam07651, ANTH, ANTH domain.  AP180 is an endocytotic accessory 
proteins that has been implicated in the formation of clathrin-coated 
pits. The domain is involved in phosphatidylinositol 
4,5-bisphosphate binding and is a universal adaptor for 
nucleation of clathrin coats.
Length=272

 Score = 298 bits (766),  Expect = 1e-96, Method: Composition-based stats.
 Identities = 106/272 (39%), Positives = 143/272 (53%), Gaps = 13/272 (5%)

Query  7    DLAINIRKATSIEETAPKRKHVRSCIVYTWD-HKSSAAFWAGMKVQPVLADEVQTFKALI  65
            DL + + KATS +E  PK KHVR  +V T    K +A FWA  +  P+    V  FKALI
Sbjct  1    DLEVAVVKATSHDEAPPKEKHVREILVGTSSSAKLAALFWALSRRLPLTRSWVVAFKALI  60

Query  66   TIHKVLQEGHPIVVREAQQHVNWIDSLMRGVGGDGIRGYGPLIREYVFFLESKLAFHRNH  125
             +HK+L+EGHP V++E  +    I SL+R         YG  IR Y  +L+ +L FHR  
Sbjct  61   LVHKLLREGHPSVLQELLRARRRISSLLRISSFSLSWDYGAFIRAYAKYLDERLDFHRKL  120

Query  126  PEFNGLFEYEEYISLKTINDPNEGYETITDLMTLQDQIDTFQKLIFSHFQ-----SGTNN  180
            P   G FE  EY SL  + DPNE Y T   +  L D I   QKL+F   +     +  +N
Sbjct  121  PRDPGTFERVEYGSLVAVGDPNERYLT-MSMEDLLDSIPKLQKLLFRLLKCRPTGNALSN  179

Query  181  ECRISALVPLVQESYGIYKFITSMLRAMHTTTG-----DNEALEPLRGRYDAQHYRLVRF  235
            EC I+AL+ LV+ES+G+Y+ I   +  +          D +    +  R+  Q  RL  F
Sbjct  180  ECIIAALILLVKESFGLYRAINEGIINLLEKFFELSKPDADRALGIYKRFVKQFERLKEF  239

Query  236  YYECSNLRYLTSLITVPKLPQDPPSLLAEDED  267
            Y  C NL Y  SL  +PKLP  PP+LL   E+
Sbjct  240  YEVCKNLGYFRSLE-IPKLPHIPPNLLEALEE  270



Lambda      K        H        a         alpha
   0.316    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 947303952


Query= TCONS_00021573

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain. I/LWEQ domains bind ...  209     7e-68


>CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain.  I/LWEQ domains bind to actin. 
It has been shown that the I/LWEQ domains from mouse talin 
and yeast Sla2p interact with F-actin. I/LWEQ domains can 
be placed into four major groups based on sequence similarity: 
(1) Metazoan talin; (2) Dictyostelium TalA/TalB and SLA110; 
(3) metazoan Hip1p and (4) yeast Sla2p. The domain has four 
conserved blocks, the name of the domain is derived from 
the initial conserved amino acid of each of the four blocks.
Length=149

 Score = 209 bits (534),  Expect = 7e-68, Method: Composition-based stats.
 Identities = 90/149 (60%), Positives = 109/149 (73%), Gaps = 0/149 (0%)

Query  234  KNNRWTEGLISAAKAVATSTNTLIETADGVISGRNSPEQLIVASNDVAASTAQLVAASRV  293
            KNNRWTEGLISAAKAVA +TN L+E ADGV+ G+ S E+LIVA+ +VAASTAQLVAASRV
Sbjct  1    KNNRWTEGLISAAKAVAAATNLLVEAADGVVQGQGSEEELIVAAKEVAASTAQLVAASRV  60

Query  294  KATFMSKTQDRLEAASKAVGAACRALVRQVQDIIAECNRDEGETVDYAKLSSHEFKVREM  353
            KA   SKTQ RLEAASKAV  A + LV  V+        +  E +D++KLS H+ K +EM
Sbjct  61   KADPNSKTQQRLEAASKAVTDATKNLVAAVKSAAELQEEEIEEEMDFSKLSLHQAKRQEM  120

Query  354  EQQVEILQLENSLARARQRLGEMRKISYQ  382
            E QVEIL+LE  L  AR++L E+RK  Y 
Sbjct  121  EAQVEILKLEKELEEARKKLAEIRKAHYH  149



Lambda      K        H        a         alpha
   0.312    0.124    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00026640

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain. I/LWEQ domains bind ...  209     7e-68


>CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain.  I/LWEQ domains bind to actin. 
It has been shown that the I/LWEQ domains from mouse talin 
and yeast Sla2p interact with F-actin. I/LWEQ domains can 
be placed into four major groups based on sequence similarity: 
(1) Metazoan talin; (2) Dictyostelium TalA/TalB and SLA110; 
(3) metazoan Hip1p and (4) yeast Sla2p. The domain has four 
conserved blocks, the name of the domain is derived from 
the initial conserved amino acid of each of the four blocks.
Length=149

 Score = 209 bits (534),  Expect = 7e-68, Method: Composition-based stats.
 Identities = 90/149 (60%), Positives = 109/149 (73%), Gaps = 0/149 (0%)

Query  234  KNNRWTEGLISAAKAVATSTNTLIETADGVISGRNSPEQLIVASNDVAASTAQLVAASRV  293
            KNNRWTEGLISAAKAVA +TN L+E ADGV+ G+ S E+LIVA+ +VAASTAQLVAASRV
Sbjct  1    KNNRWTEGLISAAKAVAAATNLLVEAADGVVQGQGSEEELIVAAKEVAASTAQLVAASRV  60

Query  294  KATFMSKTQDRLEAASKAVGAACRALVRQVQDIIAECNRDEGETVDYAKLSSHEFKVREM  353
            KA   SKTQ RLEAASKAV  A + LV  V+        +  E +D++KLS H+ K +EM
Sbjct  61   KADPNSKTQQRLEAASKAVTDATKNLVAAVKSAAELQEEEIEEEMDFSKLSLHQAKRQEM  120

Query  354  EQQVEILQLENSLARARQRLGEMRKISYQ  382
            E QVEIL+LE  L  AR++L E+RK  Y 
Sbjct  121  EAQVEILKLEKELEEARKKLAEIRKAHYH  149



Lambda      K        H        a         alpha
   0.312    0.124    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00026641

Length=841
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain. I/LWEQ domains bind ...  206     5e-63
CDD:400137 pfam07651, ANTH, ANTH domain. AP180 is an endocytotic ...  66.2    2e-12


>CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain.  I/LWEQ domains bind to actin. 
It has been shown that the I/LWEQ domains from mouse talin 
and yeast Sla2p interact with F-actin. I/LWEQ domains can 
be placed into four major groups based on sequence similarity: 
(1) Metazoan talin; (2) Dictyostelium TalA/TalB and SLA110; 
(3) metazoan Hip1p and (4) yeast Sla2p. The domain has four 
conserved blocks, the name of the domain is derived from 
the initial conserved amino acid of each of the four blocks.
Length=149

 Score = 206 bits (527),  Expect = 5e-63, Method: Composition-based stats.
 Identities = 90/149 (60%), Positives = 109/149 (73%), Gaps = 0/149 (0%)

Query  691  KNNRWTEGLISAAKAVATSTNTLIETADGVISGRNSPEQLIVASNDVAASTAQLVAASRV  750
            KNNRWTEGLISAAKAVA +TN L+E ADGV+ G+ S E+LIVA+ +VAASTAQLVAASRV
Sbjct  1    KNNRWTEGLISAAKAVAAATNLLVEAADGVVQGQGSEEELIVAAKEVAASTAQLVAASRV  60

Query  751  KATFMSKTQDRLEAASKAVGAACRALVRQVQDIIAECNRDEGETVDYAKLSSHEFKVREM  810
            KA   SKTQ RLEAASKAV  A + LV  V+        +  E +D++KLS H+ K +EM
Sbjct  61   KADPNSKTQQRLEAASKAVTDATKNLVAAVKSAAELQEEEIEEEMDFSKLSLHQAKRQEM  120

Query  811  EQQVEILQLENSLARARQRLGEMRKISYQ  839
            E QVEIL+LE  L  AR++L E+RK  Y 
Sbjct  121  EAQVEILKLEKELEEARKKLAEIRKAHYH  149


>CDD:400137 pfam07651, ANTH, ANTH domain.  AP180 is an endocytotic accessory 
proteins that has been implicated in the formation of clathrin-coated 
pits. The domain is involved in phosphatidylinositol 
4,5-bisphosphate binding and is a universal adaptor for 
nucleation of clathrin coats.
Length=272

 Score = 66.2 bits (162),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 22/54 (41%), Positives = 28/54 (52%), Gaps = 1/54 (2%)

Query  12   DNEALEPLRGRYDAQHYRLVRFYYECSNLRYLTSLITVPKLPQDPPSLLAEDED  65
            D +    +  R+  Q  RL  FY  C NL Y  SL  +PKLP  PP+LL   E+
Sbjct  218  DADRALGIYKRFVKQFERLKEFYEVCKNLGYFRSLE-IPKLPHIPPNLLEALEE  270



Lambda      K        H        a         alpha
   0.311    0.126    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1070893444


Query= TCONS_00021574

Length=841
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain. I/LWEQ domains bind ...  206     5e-63
CDD:400137 pfam07651, ANTH, ANTH domain. AP180 is an endocytotic ...  66.2    2e-12


>CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain.  I/LWEQ domains bind to actin. 
It has been shown that the I/LWEQ domains from mouse talin 
and yeast Sla2p interact with F-actin. I/LWEQ domains can 
be placed into four major groups based on sequence similarity: 
(1) Metazoan talin; (2) Dictyostelium TalA/TalB and SLA110; 
(3) metazoan Hip1p and (4) yeast Sla2p. The domain has four 
conserved blocks, the name of the domain is derived from 
the initial conserved amino acid of each of the four blocks.
Length=149

 Score = 206 bits (527),  Expect = 5e-63, Method: Composition-based stats.
 Identities = 90/149 (60%), Positives = 109/149 (73%), Gaps = 0/149 (0%)

Query  691  KNNRWTEGLISAAKAVATSTNTLIETADGVISGRNSPEQLIVASNDVAASTAQLVAASRV  750
            KNNRWTEGLISAAKAVA +TN L+E ADGV+ G+ S E+LIVA+ +VAASTAQLVAASRV
Sbjct  1    KNNRWTEGLISAAKAVAAATNLLVEAADGVVQGQGSEEELIVAAKEVAASTAQLVAASRV  60

Query  751  KATFMSKTQDRLEAASKAVGAACRALVRQVQDIIAECNRDEGETVDYAKLSSHEFKVREM  810
            KA   SKTQ RLEAASKAV  A + LV  V+        +  E +D++KLS H+ K +EM
Sbjct  61   KADPNSKTQQRLEAASKAVTDATKNLVAAVKSAAELQEEEIEEEMDFSKLSLHQAKRQEM  120

Query  811  EQQVEILQLENSLARARQRLGEMRKISYQ  839
            E QVEIL+LE  L  AR++L E+RK  Y 
Sbjct  121  EAQVEILKLEKELEEARKKLAEIRKAHYH  149


>CDD:400137 pfam07651, ANTH, ANTH domain.  AP180 is an endocytotic accessory 
proteins that has been implicated in the formation of clathrin-coated 
pits. The domain is involved in phosphatidylinositol 
4,5-bisphosphate binding and is a universal adaptor for 
nucleation of clathrin coats.
Length=272

 Score = 66.2 bits (162),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 22/54 (41%), Positives = 28/54 (52%), Gaps = 1/54 (2%)

Query  12   DNEALEPLRGRYDAQHYRLVRFYYECSNLRYLTSLITVPKLPQDPPSLLAEDED  65
            D +    +  R+  Q  RL  FY  C NL Y  SL  +PKLP  PP+LL   E+
Sbjct  218  DADRALGIYKRFVKQFERLKEFYEVCKNLGYFRSLE-IPKLPHIPPNLLEALEE  270



Lambda      K        H        a         alpha
   0.311    0.126    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1070893444


Query= TCONS_00021575

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain. I/LWEQ domains bind ...  209     7e-68


>CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain.  I/LWEQ domains bind to actin. 
It has been shown that the I/LWEQ domains from mouse talin 
and yeast Sla2p interact with F-actin. I/LWEQ domains can 
be placed into four major groups based on sequence similarity: 
(1) Metazoan talin; (2) Dictyostelium TalA/TalB and SLA110; 
(3) metazoan Hip1p and (4) yeast Sla2p. The domain has four 
conserved blocks, the name of the domain is derived from 
the initial conserved amino acid of each of the four blocks.
Length=149

 Score = 209 bits (534),  Expect = 7e-68, Method: Composition-based stats.
 Identities = 90/149 (60%), Positives = 109/149 (73%), Gaps = 0/149 (0%)

Query  234  KNNRWTEGLISAAKAVATSTNTLIETADGVISGRNSPEQLIVASNDVAASTAQLVAASRV  293
            KNNRWTEGLISAAKAVA +TN L+E ADGV+ G+ S E+LIVA+ +VAASTAQLVAASRV
Sbjct  1    KNNRWTEGLISAAKAVAAATNLLVEAADGVVQGQGSEEELIVAAKEVAASTAQLVAASRV  60

Query  294  KATFMSKTQDRLEAASKAVGAACRALVRQVQDIIAECNRDEGETVDYAKLSSHEFKVREM  353
            KA   SKTQ RLEAASKAV  A + LV  V+        +  E +D++KLS H+ K +EM
Sbjct  61   KADPNSKTQQRLEAASKAVTDATKNLVAAVKSAAELQEEEIEEEMDFSKLSLHQAKRQEM  120

Query  354  EQQVEILQLENSLARARQRLGEMRKISYQ  382
            E QVEIL+LE  L  AR++L E+RK  Y 
Sbjct  121  EAQVEILKLEKELEEARKKLAEIRKAHYH  149



Lambda      K        H        a         alpha
   0.312    0.124    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00021576

Length=1067
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400137 pfam07651, ANTH, ANTH domain. AP180 is an endocytotic ...  300     9e-95
CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain. I/LWEQ domains bind ...  182     6e-54


>CDD:400137 pfam07651, ANTH, ANTH domain.  AP180 is an endocytotic accessory 
proteins that has been implicated in the formation of clathrin-coated 
pits. The domain is involved in phosphatidylinositol 
4,5-bisphosphate binding and is a universal adaptor for 
nucleation of clathrin coats.
Length=272

 Score = 300 bits (771),  Expect = 9e-95, Method: Composition-based stats.
 Identities = 106/272 (39%), Positives = 143/272 (53%), Gaps = 13/272 (5%)

Query  7    DLAINIRKATSIEETAPKRKHVRSCIVYTWD-HKSSAAFWAGMKVQPVLADEVQTFKALI  65
            DL + + KATS +E  PK KHVR  +V T    K +A FWA  +  P+    V  FKALI
Sbjct  1    DLEVAVVKATSHDEAPPKEKHVREILVGTSSSAKLAALFWALSRRLPLTRSWVVAFKALI  60

Query  66   TIHKVLQEGHPIVVREAQQHVNWIDSLMRGVGGDGIRGYGPLIREYVFFLESKLAFHRNH  125
             +HK+L+EGHP V++E  +    I SL+R         YG  IR Y  +L+ +L FHR  
Sbjct  61   LVHKLLREGHPSVLQELLRARRRISSLLRISSFSLSWDYGAFIRAYAKYLDERLDFHRKL  120

Query  126  PEFNGLFEYEEYISLKTINDPNEGYETITDLMTLQDQIDTFQKLIFSHFQ-----SGTNN  180
            P   G FE  EY SL  + DPNE Y T   +  L D I   QKL+F   +     +  +N
Sbjct  121  PRDPGTFERVEYGSLVAVGDPNERYLT-MSMEDLLDSIPKLQKLLFRLLKCRPTGNALSN  179

Query  181  ECRISALVPLVQESYGIYKFITSMLRAMHTTTG-----DNEALEPLRGRYDAQHYRLVRF  235
            EC I+AL+ LV+ES+G+Y+ I   +  +          D +    +  R+  Q  RL  F
Sbjct  180  ECIIAALILLVKESFGLYRAINEGIINLLEKFFELSKPDADRALGIYKRFVKQFERLKEF  239

Query  236  YYECSNLRYLTSLITVPKLPQDPPSLLAEDED  267
            Y  C NL Y  SL  +PKLP  PP+LL   E+
Sbjct  240  YEVCKNLGYFRSLE-IPKLPHIPPNLLEALEE  270


>CDD:460265 pfam01608, I_LWEQ, I/LWEQ domain.  I/LWEQ domains bind to actin. 
It has been shown that the I/LWEQ domains from mouse talin 
and yeast Sla2p interact with F-actin. I/LWEQ domains can 
be placed into four major groups based on sequence similarity: 
(1) Metazoan talin; (2) Dictyostelium TalA/TalB and SLA110; 
(3) metazoan Hip1p and (4) yeast Sla2p. The domain has four 
conserved blocks, the name of the domain is derived from 
the initial conserved amino acid of each of the four blocks.
Length=149

 Score = 182 bits (465),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 77/124 (62%), Positives = 92/124 (74%), Gaps = 0/124 (0%)

Query  893   KNNRWTEGLISAAKAVATSTNTLIETADGVISGRNSPEQLIVASNDVAASTAQLVAASRV  952
             KNNRWTEGLISAAKAVA +TN L+E ADGV+ G+ S E+LIVA+ +VAASTAQLVAASRV
Sbjct  1     KNNRWTEGLISAAKAVAAATNLLVEAADGVVQGQGSEEELIVAAKEVAASTAQLVAASRV  60

Query  953   KATFMSKTQDRLEAASKAVGAACRALVRQVQDIIAECNRDEGETVDYAKLSSHEFKVREM  1012
             KA   SKTQ RLEAASKAV  A + LV  V+        +  E +D++KLS H+ K +EM
Sbjct  61    KADPNSKTQQRLEAASKAVTDATKNLVAAVKSAAELQEEEIEEEMDFSKLSLHQAKRQEM  120

Query  1013  EQQV  1016
             E QV
Sbjct  121   EAQV  124



Lambda      K        H        a         alpha
   0.314    0.128    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1374815596


Query= TCONS_00021578

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box          88.4    6e-23


>CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box.  
Length=68

 Score = 88.4 bits (220),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 40/68 (59%), Gaps = 0/68 (0%)

Query  126  VPRPPNAFILYRQHHHPKIKEAYPDYSNNDISVMLGKQWKDENEEIKTQFRNLAEELKKK  185
              RP +AF L+ +    K+K   P   N +IS +LG++WK  +EE K  +   AE+ K +
Sbjct  1    PKRPMSAFFLFSKEQRAKLKAENPGLKNAEISKILGEKWKALSEEEKKPYEEKAEKEKAR  60

Query  186  HAEDHPDY  193
            + ++HP+Y
Sbjct  61   YEKEHPEY  68



Lambda      K        H        a         alpha
   0.314    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0874    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00026643

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426579 pfam02046, COX6A, Cytochrome c oxidase subunit VIa         219     6e-76


>CDD:426579 pfam02046, COX6A, Cytochrome c oxidase subunit VIa.  
Length=112

 Score = 219 bits (560),  Expect = 6e-76, Method: Composition-based stats.
 Identities = 78/112 (70%), Positives = 85/112 (76%), Gaps = 0/112 (0%)

Query  20   RAAFQRRLNSTDNKLPWMVDNAFNRERAAVKHHAAATSDLWRKLSIYAVIPCLILGSINA  79
            R   QRR  S+        +N F RER AVK HAA T+DLWRK+S Y  IP LIL  INA
Sbjct  1    RQRAQRRFASSAAGHAAAAENEFVREREAVKEHAAGTTDLWRKISYYVAIPALILAGINA  60

Query  80   YNLWNEHWEHWEHMPPLEERTEYPYQNIRVKNFPFGDGDKTLFWNDQVNYHN  131
            YNL NEHWEHWEH+PPLEERTEYPYQNIR KNF +GDGDKTLFWND+VNYHN
Sbjct  61   YNLENEHWEHWEHLPPLEERTEYPYQNIRTKNFFWGDGDKTLFWNDKVNYHN  112



Lambda      K        H        a         alpha
   0.320    0.132    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00026642

Length=96
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426579 pfam02046, COX6A, Cytochrome c oxidase subunit VIa         152     2e-50


>CDD:426579 pfam02046, COX6A, Cytochrome c oxidase subunit VIa.  
Length=112

 Score = 152 bits (386),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 54/64 (84%), Positives = 57/64 (89%), Gaps = 0/64 (0%)

Query  28   VIPCLILGSINAYNLWNEHWEHWEHMPPLEERTEYPYQNIRVKNFPFGDGDKTLFWNDQV  87
             IP LIL  INAYNL NEHWEHWEH+PPLEERTEYPYQNIR KNF +GDGDKTLFWND+V
Sbjct  49   AIPALILAGINAYNLENEHWEHWEHLPPLEERTEYPYQNIRTKNFFWGDGDKTLFWNDKV  108

Query  88   NYHN  91
            NYHN
Sbjct  109  NYHN  112



Lambda      K        H        a         alpha
   0.317    0.133    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00026645

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426579 pfam02046, COX6A, Cytochrome c oxidase subunit VIa         196     4e-67


>CDD:426579 pfam02046, COX6A, Cytochrome c oxidase subunit VIa.  
Length=112

 Score = 196 bits (501),  Expect = 4e-67, Method: Composition-based stats.
 Identities = 67/100 (67%), Positives = 73/100 (73%), Gaps = 0/100 (0%)

Query  20   RAAFQRRLNSTDNKLPWMVDNAFNRERAAVKHHAAATSDLWRKLSIYAVIPCLILGSINA  79
            R   QRR  S+        +N F RER AVK HAA T+DLWRK+S Y  IP LIL  INA
Sbjct  1    RQRAQRRFASSAAGHAAAAENEFVREREAVKEHAAGTTDLWRKISYYVAIPALILAGINA  60

Query  80   YNLWNEHWEHWEHMPPLEERTEYPYQNIRVKNFPFGDGDK  119
            YNL NEHWEHWEH+PPLEERTEYPYQNIR KNF +GDGDK
Sbjct  61   YNLENEHWEHWEHLPPLEERTEYPYQNIRTKNFFWGDGDK  100



Lambda      K        H        a         alpha
   0.320    0.135    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00026644

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426579 pfam02046, COX6A, Cytochrome c oxidase subunit VIa         226     3e-78


>CDD:426579 pfam02046, COX6A, Cytochrome c oxidase subunit VIa.  
Length=112

 Score = 226 bits (577),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 78/112 (70%), Positives = 85/112 (76%), Gaps = 0/112 (0%)

Query  20   RAAFQRRLNSTDNKLPWMVDNAFNRERAAVKHHAAATSDLWRKLSIYAVIPCLILGSINA  79
            R   QRR  S+        +N F RER AVK HAA T+DLWRK+S Y  IP LIL  INA
Sbjct  1    RQRAQRRFASSAAGHAAAAENEFVREREAVKEHAAGTTDLWRKISYYVAIPALILAGINA  60

Query  80   YNLWNEHWEHWEHMPPLEERTEYPYQNIRVKNFPFGDGDKTLFWNDQVNYHN  131
            YNL NEHWEHWEH+PPLEERTEYPYQNIR KNF +GDGDKTLFWND+VNYHN
Sbjct  61   YNLENEHWEHWEHLPPLEERTEYPYQNIRTKNFFWGDGDKTLFWNDKVNYHN  112



Lambda      K        H        a         alpha
   0.321    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00021579

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426579 pfam02046, COX6A, Cytochrome c oxidase subunit VIa         219     6e-76


>CDD:426579 pfam02046, COX6A, Cytochrome c oxidase subunit VIa.  
Length=112

 Score = 219 bits (559),  Expect = 6e-76, Method: Composition-based stats.
 Identities = 78/112 (70%), Positives = 85/112 (76%), Gaps = 0/112 (0%)

Query  20   RAAFQRRLNSTDNKLPWMVDNAFNRERAAVKHHAAATSDLWRKLSIYAVIPCLILGSINA  79
            R   QRR  S+        +N F RER AVK HAA T+DLWRK+S Y  IP LIL  INA
Sbjct  1    RQRAQRRFASSAAGHAAAAENEFVREREAVKEHAAGTTDLWRKISYYVAIPALILAGINA  60

Query  80   YNLWNEHWEHWEHMPPLEERTEYPYQNIRVKNFPFGDGDKTLFWNDQVNYHN  131
            YNL NEHWEHWEH+PPLEERTEYPYQNIR KNF +GDGDKTLFWND+VNYHN
Sbjct  61   YNLENEHWEHWEHLPPLEERTEYPYQNIRTKNFFWGDGDKTLFWNDKVNYHN  112



Lambda      K        H        a         alpha
   0.320    0.132    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00021580

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426579 pfam02046, COX6A, Cytochrome c oxidase subunit VIa         219     4e-76


>CDD:426579 pfam02046, COX6A, Cytochrome c oxidase subunit VIa.  
Length=112

 Score = 219 bits (560),  Expect = 4e-76, Method: Composition-based stats.
 Identities = 78/112 (70%), Positives = 85/112 (76%), Gaps = 0/112 (0%)

Query  20   RAAFQRRLNSTDNKLPWMVDNAFNRERAAVKHHAAATSDLWRKLSIYAVIPCLILGSINA  79
            R   QRR  S+        +N F RER AVK HAA T+DLWRK+S Y  IP LIL  INA
Sbjct  1    RQRAQRRFASSAAGHAAAAENEFVREREAVKEHAAGTTDLWRKISYYVAIPALILAGINA  60

Query  80   YNLWNEHWEHWEHMPPLEERTEYPYQNIRVKNFPFGDGDKTLFWNDQVNYHN  131
            YNL NEHWEHWEH+PPLEERTEYPYQNIR KNF +GDGDKTLFWND+VNYHN
Sbjct  61   YNLENEHWEHWEHLPPLEERTEYPYQNIRTKNFFWGDGDKTLFWNDKVNYHN  112



Lambda      K        H        a         alpha
   0.321    0.133    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00021581

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426579 pfam02046, COX6A, Cytochrome c oxidase subunit VIa         219     4e-76


>CDD:426579 pfam02046, COX6A, Cytochrome c oxidase subunit VIa.  
Length=112

 Score = 219 bits (560),  Expect = 4e-76, Method: Composition-based stats.
 Identities = 78/112 (70%), Positives = 85/112 (76%), Gaps = 0/112 (0%)

Query  20   RAAFQRRLNSTDNKLPWMVDNAFNRERAAVKHHAAATSDLWRKLSIYAVIPCLILGSINA  79
            R   QRR  S+        +N F RER AVK HAA T+DLWRK+S Y  IP LIL  INA
Sbjct  1    RQRAQRRFASSAAGHAAAAENEFVREREAVKEHAAGTTDLWRKISYYVAIPALILAGINA  60

Query  80   YNLWNEHWEHWEHMPPLEERTEYPYQNIRVKNFPFGDGDKTLFWNDQVNYHN  131
            YNL NEHWEHWEH+PPLEERTEYPYQNIR KNF +GDGDKTLFWND+VNYHN
Sbjct  61   YNLENEHWEHWEHLPPLEERTEYPYQNIRTKNFFWGDGDKTLFWNDKVNYHN  112



Lambda      K        H        a         alpha
   0.321    0.133    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00021582

Length=299
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460140 pfam01259, SAICAR_synt, SAICAR synthetase. Also known ...  295     8e-102


>CDD:460140 pfam01259, SAICAR_synt, SAICAR synthetase.  Also known as Phosphoribosylaminoimidazole-succinocarboxamide 
synthase.
Length=228

 Score = 295 bits (759),  Expect = 8e-102, Method: Composition-based stats.
 Identities = 107/263 (41%), Positives = 143/263 (54%), Gaps = 41/263 (16%)

Query  16   LIARGKVRDLYEVDD-KTLLFIATDRISAYDVIMENGIPNKGVLLTLCTKAWFKILTDA-  73
            L+  GKV+D+YE DD  TLL +A DRISA+D + +  IP KG +    +  WF++L  A 
Sbjct  1    LLYEGKVKDVYETDDPDTLLVVAKDRISAFDGVKKGTIPGKGAVNNQISAFWFELLEIAG  60

Query  74   IPSLRTHFITLDLPPQIPPSLRPALQNRSMQVRKLKILPIEAIVRGYITGSAWNEYKKSG  133
            IP   THFI               L  R M V+K+KI+P+E +VR Y  GS         
Sbjct  61   IP---THFIKS-------------LSGREMLVKKVKIIPLEVVVRNYAAGS---------  95

Query  134  TVHGIKVAPGLRESEAFPDGPIYTPSTKAEQGEHDENIHPDQAAAILG----EHASTVAS  189
                 K  PGL+E    P+ PI+ PSTKA+    D NI+ +   A LG    E A  +  
Sbjct  96   ---LGKRLPGLKEGTKLPE-PIFEPSTKADAL-GDPNINEEHIVA-LGLATEEEAEEIRE  149

Query  190  LAVQLYKVAHAYALSRGVIIADTKFEFGVDEETNEVVLADEVLTPDSSRFWPKDDYEVGR  249
            LA+++ ++   YA  RG+I+ DTK EFG+D    E+VLADE+ TPDSSRFW  D YE  +
Sbjct  150  LALKINEILKEYAAERGIILVDTKLEFGLD-SDGEIVLADEI-TPDSSRFWDADTYE--K  205

Query  250  GQQSFDKQFLRDWLVKEGLKGKE  272
             Q+S DK   RD L       +E
Sbjct  206  SQESLDKDRFRDDLGDVEEAYQE  228



Lambda      K        H        a         alpha
   0.316    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00021583

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460140 pfam01259, SAICAR_synt, SAICAR synthetase. Also known ...  176     1e-56


>CDD:460140 pfam01259, SAICAR_synt, SAICAR synthetase.  Also known as Phosphoribosylaminoimidazole-succinocarboxamide 
synthase.
Length=228

 Score = 176 bits (450),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 63/162 (39%), Positives = 85/162 (52%), Gaps = 32/162 (20%)

Query  16   LIARGKVRDLYEVDD-KTLLFIATDRISAYDVIMENGIPNKGVLLTLCTKAWFKILTDA-  73
            L+  GKV+D+YE DD  TLL +A DRISA+D + +  IP KG +    +  WF++L  A 
Sbjct  1    LLYEGKVKDVYETDDPDTLLVVAKDRISAFDGVKKGTIPGKGAVNNQISAFWFELLEIAG  60

Query  74   IPSLRTHFITLDLPPQIPPSLRPALQNRSMQVRKLKILPIEAIVRGYITGSAWNEYKKSG  133
            IP   THFI               L  R M V+K+KI+P+E +VR Y  GS         
Sbjct  61   IP---THFIKS-------------LSGREMLVKKVKIIPLEVVVRNYAAGS---------  95

Query  134  TVHGIKVAPGLRESEAFPDGPIYTPSTKAEQGEHDENIHPDQ  175
                 K  PGL+E    P+ PI+ PSTKA+    D NI+ + 
Sbjct  96   ---LGKRLPGLKEGTKLPE-PIFEPSTKADAL-GDPNINEEH  132



Lambda      K        H        a         alpha
   0.317    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00021584

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00021585

Length=404


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00026646

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00021586

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00021587

Length=1069
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462818 pfam09497, Med12, Transcription mediator complex subun...  124     1e-34


>CDD:462818 pfam09497, Med12, Transcription mediator complex subunit Med12. 
 Med12 is a negative regulator of the Gli3-dependent sonic 
hedgehog signalling pathway via its interaction with Gli3 
within the RNA polymerase II transcriptional Mediator. A complex 
is formed between Med12, Med13, CDK8 and CycC which is 
responsible for suppression of transcription. This subunit forms 
part of the Kinase section of Mediator.
Length=63

 Score = 124 bits (313),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 45/63 (71%), Positives = 53/63 (84%), Gaps = 0/63 (0%)

Query  72   FKPPPRVTLTDNKREAWLRDLANPNVPLRKLSRTIPHGIRGRVLLDQCLTKWVPVGRAVW  131
            FKPPPRVTLTD KREAWLRDLANPNVPL KLS+ IPHG++G+ LL+Q  +K VP+ RA+W
Sbjct  1    FKPPPRVTLTDTKREAWLRDLANPNVPLSKLSKKIPHGLKGKKLLEQLCSKNVPIPRAIW  60

Query  132  LAK  134
              K
Sbjct  61   FIK  63



Lambda      K        H        a         alpha
   0.321    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1377647348


Query= TCONS_00021588

Length=980
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462818 pfam09497, Med12, Transcription mediator complex subun...  124     2e-34


>CDD:462818 pfam09497, Med12, Transcription mediator complex subunit Med12. 
 Med12 is a negative regulator of the Gli3-dependent sonic 
hedgehog signalling pathway via its interaction with Gli3 
within the RNA polymerase II transcriptional Mediator. A complex 
is formed between Med12, Med13, CDK8 and CycC which is 
responsible for suppression of transcription. This subunit forms 
part of the Kinase section of Mediator.
Length=63

 Score = 124 bits (313),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 45/63 (71%), Positives = 53/63 (84%), Gaps = 0/63 (0%)

Query  72   FKPPPRVTLTDNKREAWLRDLANPNVPLRKLSRTIPHGIRGRVLLDQCLTKWVPVGRAVW  131
            FKPPPRVTLTD KREAWLRDLANPNVPL KLS+ IPHG++G+ LL+Q  +K VP+ RA+W
Sbjct  1    FKPPPRVTLTDTKREAWLRDLANPNVPLSKLSKKIPHGLKGKKLLEQLCSKNVPIPRAIW  60

Query  132  LAK  134
              K
Sbjct  61   FIK  63



Lambda      K        H        a         alpha
   0.321    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1251634384


Query= TCONS_00021590

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00026647

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00021592

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00021591

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00021589

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00021593

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00021594

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00026648

Length=114
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460137 pfam01253, SUI1, Translation initiation factor SUI1        78.2    4e-21


>CDD:460137 pfam01253, SUI1, Translation initiation factor SUI1.  
Length=75

 Score = 78.2 bits (194),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 45/75 (60%), Positives = 53/75 (71%), Gaps = 2/75 (3%)

Query  26  QNYIHIRIQQRNGRKTLTTVQGL-PKKFDQKKILKVIKKKFACNGTIVNDSEMGEVIQLQ  84
           Q  IHIR++QR GRKT+TTV GL P   D KK+ K +KKKFAC GT+V D   GE IQ+Q
Sbjct  1   QPKIHIRVEQRGGRKTVTTVSGLEPFGIDLKKLAKELKKKFACGGTVVKD-GGGEEIQVQ  59

Query  85  GDQRKDVQEFLTDKK  99
           GDQR  V E LT+K 
Sbjct  60  GDQRDKVAELLTEKG  74



Lambda      K        H        a         alpha
   0.314    0.133    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00021595

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00026649

Length=114
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460137 pfam01253, SUI1, Translation initiation factor SUI1        78.2    4e-21


>CDD:460137 pfam01253, SUI1, Translation initiation factor SUI1.  
Length=75

 Score = 78.2 bits (194),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 45/75 (60%), Positives = 53/75 (71%), Gaps = 2/75 (3%)

Query  26  QNYIHIRIQQRNGRKTLTTVQGL-PKKFDQKKILKVIKKKFACNGTIVNDSEMGEVIQLQ  84
           Q  IHIR++QR GRKT+TTV GL P   D KK+ K +KKKFAC GT+V D   GE IQ+Q
Sbjct  1   QPKIHIRVEQRGGRKTVTTVSGLEPFGIDLKKLAKELKKKFACGGTVVKD-GGGEEIQVQ  59

Query  85  GDQRKDVQEFLTDKK  99
           GDQR  V E LT+K 
Sbjct  60  GDQRDKVAELLTEKG  74



Lambda      K        H        a         alpha
   0.314    0.133    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00026650

Length=114
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460137 pfam01253, SUI1, Translation initiation factor SUI1        78.2    4e-21


>CDD:460137 pfam01253, SUI1, Translation initiation factor SUI1.  
Length=75

 Score = 78.2 bits (194),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 45/75 (60%), Positives = 53/75 (71%), Gaps = 2/75 (3%)

Query  26  QNYIHIRIQQRNGRKTLTTVQGL-PKKFDQKKILKVIKKKFACNGTIVNDSEMGEVIQLQ  84
           Q  IHIR++QR GRKT+TTV GL P   D KK+ K +KKKFAC GT+V D   GE IQ+Q
Sbjct  1   QPKIHIRVEQRGGRKTVTTVSGLEPFGIDLKKLAKELKKKFACGGTVVKD-GGGEEIQVQ  59

Query  85  GDQRKDVQEFLTDKK  99
           GDQR  V E LT+K 
Sbjct  60  GDQRDKVAELLTEKG  74



Lambda      K        H        a         alpha
   0.314    0.133    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00021596

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00026651

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00021597

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00026653

Length=114
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460137 pfam01253, SUI1, Translation initiation factor SUI1        78.2    4e-21


>CDD:460137 pfam01253, SUI1, Translation initiation factor SUI1.  
Length=75

 Score = 78.2 bits (194),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 45/75 (60%), Positives = 53/75 (71%), Gaps = 2/75 (3%)

Query  26  QNYIHIRIQQRNGRKTLTTVQGL-PKKFDQKKILKVIKKKFACNGTIVNDSEMGEVIQLQ  84
           Q  IHIR++QR GRKT+TTV GL P   D KK+ K +KKKFAC GT+V D   GE IQ+Q
Sbjct  1   QPKIHIRVEQRGGRKTVTTVSGLEPFGIDLKKLAKELKKKFACGGTVVKD-GGGEEIQVQ  59

Query  85  GDQRKDVQEFLTDKK  99
           GDQR  V E LT+K 
Sbjct  60  GDQRDKVAELLTEKG  74



Lambda      K        H        a         alpha
   0.314    0.133    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00021599

Length=331


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00021598

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00026654

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00021600

Length=629


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790487440


Query= TCONS_00021601

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00021602

Length=572


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00021603

Length=693


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 884874000


Query= TCONS_00021604

Length=508


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00021606

Length=572


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00021605

Length=693


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0702    0.140     1.90     42.6     43.6 

Effective search space used: 884874000


Query= TCONS_00021607

Length=476


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00026656

Length=315


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00021608

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  224     1e-76
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  99.9    3e-28


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 224 bits (573),  Expect = 1e-76, Method: Composition-based stats.
 Identities = 80/169 (47%), Positives = 102/169 (60%), Gaps = 16/169 (9%)

Query  11   KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYTASVMVDGRPISLGLWDTAGQED  69
            K V+ GDG VGK+ LLI +T N FP EYIPT+  D YT ++ VDG+ + L +WDTAGQE 
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  70   YDRLRPLSYPQTDVFLICFSIVSPPSFDNVKAKWYPEIEHHAP-NVPIILVGTKLDLRDD  128
            +  LRPL Y   D FL+ + I S  SF+NVK KW  EI  HA  NVPI+LVG K DL D 
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVK-KWVEEILRHADENVPIVLVGNKCDLEDQ  119

Query  129  PATAESLRQRKMEPVSYEQALAVAKEIRAHKYLECSALTQRNLKSVFDE  177
                          VS E+  A+AKE+    ++E SA T  N++  F+E
Sbjct  120  ------------RVVSTEEGEALAKELGL-PFMETSAKTNENVEEAFEE  155


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 99.9 bits (250),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 44/118 (37%), Positives = 61/118 (52%), Gaps = 8/118 (7%)

Query  11   KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYTASVMVD-GRPISLGLWDTAG  66
            K V+ GD  VGKT LL  +  + F  +Y  T+   F   T     D G+ I L +WDTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  67   QEDYDRLRPLSYPQTDVFLICFSIVSPPSFDNVKAKWYPEIEHHAPNVPIILVGTKLD  124
            QE +  L P  Y      L+ +      +F N+K  W  E++ +A N P+ILVG K+D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDS---RTFSNLK-YWLRELKKYAGNSPVILVGNKID  114



Lambda      K        H        a         alpha
   0.318    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00026657

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  232     3e-79
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  99.9    6e-28


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 232 bits (593),  Expect = 3e-79, Method: Composition-based stats.
 Identities = 82/176 (47%), Positives = 105/176 (60%), Gaps = 16/176 (9%)

Query  11   KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYTASVMVDGRPISLGLWDTAGQED  69
            K V+ GDG VGK+ LLI +T N FP EYIPT+  D YT ++ VDG+ + L +WDTAGQE 
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  70   YDRLRPLSYPQTDVFLICFSIVSPPSFDNVKAKWYPEIEHHAP-NVPIILVGTKLDLRDD  128
            +  LRPL Y   D FL+ + I S  SF+NVK KW  EI  HA  NVPI+LVG K DL D 
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVK-KWVEEILRHADENVPIVLVGNKCDLEDQ  119

Query  129  PATAESLRQRKMEPVSYEQALAVAKEIRAHKYLECSALTQRNLKSVFDEAIRAVLN  184
                          VS E+  A+AKE+    ++E SA T  N++  F+E  R +L 
Sbjct  120  ------------RVVSTEEGEALAKELGL-PFMETSAKTNENVEEAFEELAREILK  162


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 99.9 bits (250),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 44/118 (37%), Positives = 61/118 (52%), Gaps = 8/118 (7%)

Query  11   KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYTASVMVD-GRPISLGLWDTAG  66
            K V+ GD  VGKT LL  +  + F  +Y  T+   F   T     D G+ I L +WDTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  67   QEDYDRLRPLSYPQTDVFLICFSIVSPPSFDNVKAKWYPEIEHHAPNVPIILVGTKLD  124
            QE +  L P  Y      L+ +      +F N+K  W  E++ +A N P+ILVG K+D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDS---RTFSNLK-YWLRELKKYAGNSPVILVGNKID  114



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00026659

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  229     2e-78
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  100     3e-28


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 229 bits (587),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 82/176 (47%), Positives = 105/176 (60%), Gaps = 16/176 (9%)

Query  11   KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTVS-DNYTASVMVDGRPISLGLWDTAGQED  69
            K V+ GDG VGK+ LLI +T N FP EYIPT+  D YT ++ VDG+ + L +WDTAGQE 
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  70   YDRLRPLSYPQTDVFLICFSIVSPPSFDNVKAKWYPEIEHHAP-NVPIILVGTKLDLRDD  128
            +  LRPL Y   D FL+ + I S  SF+NVK KW  EI  HA  NVPI+LVG K DL D 
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVK-KWVEEILRHADENVPIVLVGNKCDLEDQ  119

Query  129  PATAESLRQRKMEPVSYEQALAVAKEIRAHKYLECSALTQRNLKSVFDEAIRAVLN  184
                          VS E+  A+AKE+    ++E SA T  N++  F+E  R +L 
Sbjct  120  ------------RVVSTEEGEALAKELGL-PFMETSAKTNENVEEAFEELAREILK  162


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 100 bits (252),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 41/118 (35%), Positives = 63/118 (53%), Gaps = 8/118 (7%)

Query  11   KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTVSDNYTASVMV----DGRPISLGLWDTAG  66
            K V+ GD  VGKT LL  +  + F  +Y  T+  ++    ++    +G+ I L +WDTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  67   QEDYDRLRPLSYPQTDVFLICFSIVSPPSFDNVKAKWYPEIEHHAPNVPIILVGTKLD  124
            QE +  L P  Y      L+ +      +F N+K  W  E++ +A N P+ILVG K+D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDS---RTFSNLK-YWLRELKKYAGNSPVILVGNKID  114



Lambda      K        H        a         alpha
   0.317    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00026658

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  222     1e-75
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  90.3    3e-24


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 222 bits (569),  Expect = 1e-75, Method: Composition-based stats.
 Identities = 81/176 (46%), Positives = 104/176 (59%), Gaps = 16/176 (9%)

Query  11   KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYTASVMVDGRPISLGLWDTAGQED  69
            K V+ GDG VGK+ LLI +T N FP EYIPT+  D YT ++ VDG+ + L +WDTAGQE 
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  70   YDRLRPLSYPQTDVFLICFSIVSPPSFDNVKAKVHPEIEHHAP-NVPIILVGTKLDLRDD  128
            +  LRPL Y   D FL+ + I S  SF+NVK K   EI  HA  NVPI+LVG K DL D 
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVK-KWVEEILRHADENVPIVLVGNKCDLEDQ  119

Query  129  PATAESLRQRKMEPVSYEQALAVAKEIRAHKYLECSALTQRNLKSVFDEAIRYVLN  184
                          VS E+  A+AKE+    ++E SA T  N++  F+E  R +L 
Sbjct  120  ------------RVVSTEEGEALAKELGL-PFMETSAKTNENVEEAFEELAREILK  162


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 90.3 bits (225),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 43/118 (36%), Positives = 60/118 (51%), Gaps = 8/118 (7%)

Query  11   KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYTASVMVD-GRPISLGLWDTAG  66
            K V+ GD  VGKT LL  +  + F  +Y  T+   F   T     D G+ I L +WDTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  67   QEDYDRLRPLSYPQTDVFLICFSIVSPPSFDNVKAKVHPEIEHHAPNVPIILVGTKLD  124
            QE +  L P  Y      L+ +      +F N+K     E++ +A N P+ILVG K+D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDS---RTFSNLK-YWLRELKKYAGNSPVILVGNKID  114



Lambda      K        H        a         alpha
   0.318    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00021609

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  232     3e-79
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  99.9    6e-28


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 232 bits (593),  Expect = 3e-79, Method: Composition-based stats.
 Identities = 82/176 (47%), Positives = 105/176 (60%), Gaps = 16/176 (9%)

Query  11   KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYTASVMVDGRPISLGLWDTAGQED  69
            K V+ GDG VGK+ LLI +T N FP EYIPT+  D YT ++ VDG+ + L +WDTAGQE 
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  70   YDRLRPLSYPQTDVFLICFSIVSPPSFDNVKAKWYPEIEHHAP-NVPIILVGTKLDLRDD  128
            +  LRPL Y   D FL+ + I S  SF+NVK KW  EI  HA  NVPI+LVG K DL D 
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVK-KWVEEILRHADENVPIVLVGNKCDLEDQ  119

Query  129  PATAESLRQRKMEPVSYEQALAVAKEIRAHKYLECSALTQRNLKSVFDEAIRAVLN  184
                          VS E+  A+AKE+    ++E SA T  N++  F+E  R +L 
Sbjct  120  ------------RVVSTEEGEALAKELGL-PFMETSAKTNENVEEAFEELAREILK  162


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 99.9 bits (250),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 44/118 (37%), Positives = 61/118 (52%), Gaps = 8/118 (7%)

Query  11   KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYTASVMVD-GRPISLGLWDTAG  66
            K V+ GD  VGKT LL  +  + F  +Y  T+   F   T     D G+ I L +WDTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  67   QEDYDRLRPLSYPQTDVFLICFSIVSPPSFDNVKAKWYPEIEHHAPNVPIILVGTKLD  124
            QE +  L P  Y      L+ +      +F N+K  W  E++ +A N P+ILVG K+D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDS---RTFSNLK-YWLRELKKYAGNSPVILVGNKID  114



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00021610

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  232     3e-79
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  99.9    6e-28


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 232 bits (593),  Expect = 3e-79, Method: Composition-based stats.
 Identities = 82/176 (47%), Positives = 105/176 (60%), Gaps = 16/176 (9%)

Query  11   KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYTASVMVDGRPISLGLWDTAGQED  69
            K V+ GDG VGK+ LLI +T N FP EYIPT+  D YT ++ VDG+ + L +WDTAGQE 
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  70   YDRLRPLSYPQTDVFLICFSIVSPPSFDNVKAKWYPEIEHHAP-NVPIILVGTKLDLRDD  128
            +  LRPL Y   D FL+ + I S  SF+NVK KW  EI  HA  NVPI+LVG K DL D 
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVK-KWVEEILRHADENVPIVLVGNKCDLEDQ  119

Query  129  PATAESLRQRKMEPVSYEQALAVAKEIRAHKYLECSALTQRNLKSVFDEAIRAVLN  184
                          VS E+  A+AKE+    ++E SA T  N++  F+E  R +L 
Sbjct  120  ------------RVVSTEEGEALAKELGL-PFMETSAKTNENVEEAFEELAREILK  162


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 99.9 bits (250),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 44/118 (37%), Positives = 61/118 (52%), Gaps = 8/118 (7%)

Query  11   KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYTASVMVD-GRPISLGLWDTAG  66
            K V+ GD  VGKT LL  +  + F  +Y  T+   F   T     D G+ I L +WDTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  67   QEDYDRLRPLSYPQTDVFLICFSIVSPPSFDNVKAKWYPEIEHHAPNVPIILVGTKLD  124
            QE +  L P  Y      L+ +      +F N+K  W  E++ +A N P+ILVG K+D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDS---RTFSNLK-YWLRELKKYAGNSPVILVGNKID  114



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00026660

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  181     3e-59
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  69.1    5e-16


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 181 bits (461),  Expect = 3e-59, Method: Composition-based stats.
 Identities = 63/148 (43%), Positives = 82/148 (55%), Gaps = 15/148 (10%)

Query  36   DSTSRFDNYTASVMVDGRPISLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSPPSFD  95
              T   D YT ++ VDG+ + L +WDTAGQE +  LRPL Y   D FL+ + I S  SF+
Sbjct  29   IPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRALRPLYYRGADGFLLVYDITSRDSFE  88

Query  96   NVKAKWYPEIEHHAP-NVPIILVGTKLDLRDDPATAESLRQRKMEPVSYEQALAVAKEIR  154
            NVK KW  EI  HA  NVPI+LVG K DL D               VS E+  A+AKE+ 
Sbjct  89   NVK-KWVEEILRHADENVPIVLVGNKCDLEDQ------------RVVSTEEGEALAKELG  135

Query  155  AHKYLECSALTQRNLKSVFDEAIRAVLN  182
               ++E SA T  N++  F+E  R +L 
Sbjct  136  L-PFMETSAKTNENVEEAFEELAREILK  162


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 69.1 bits (170),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 28/72 (39%), Positives = 41/72 (57%), Gaps = 4/72 (6%)

Query  51   DGRPISLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSPPSFDNVKAKWYPEIEHHAP  110
            +G+ I L +WDTAGQE +  L P  Y      L+ +      +F N+K  W  E++ +A 
Sbjct  47   NGKKIKLNIWDTAGQERFRSLHPFYYRGAAAALLVYDS---RTFSNLK-YWLRELKKYAG  102

Query  111  NVPIILVGTKLD  122
            N P+ILVG K+D
Sbjct  103  NSPVILVGNKID  114



Lambda      K        H        a         alpha
   0.320    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00021611

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  232     3e-79
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  99.9    6e-28


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 232 bits (593),  Expect = 3e-79, Method: Composition-based stats.
 Identities = 82/176 (47%), Positives = 105/176 (60%), Gaps = 16/176 (9%)

Query  11   KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYTASVMVDGRPISLGLWDTAGQED  69
            K V+ GDG VGK+ LLI +T N FP EYIPT+  D YT ++ VDG+ + L +WDTAGQE 
Sbjct  1    KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  70   YDRLRPLSYPQTDVFLICFSIVSPPSFDNVKAKWYPEIEHHAP-NVPIILVGTKLDLRDD  128
            +  LRPL Y   D FL+ + I S  SF+NVK KW  EI  HA  NVPI+LVG K DL D 
Sbjct  61   FRALRPLYYRGADGFLLVYDITSRDSFENVK-KWVEEILRHADENVPIVLVGNKCDLEDQ  119

Query  129  PATAESLRQRKMEPVSYEQALAVAKEIRAHKYLECSALTQRNLKSVFDEAIRAVLN  184
                          VS E+  A+AKE+    ++E SA T  N++  F+E  R +L 
Sbjct  120  ------------RVVSTEEGEALAKELGL-PFMETSAKTNENVEEAFEELAREILK  162


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 99.9 bits (250),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 44/118 (37%), Positives = 61/118 (52%), Gaps = 8/118 (7%)

Query  11   KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYTASVMVD-GRPISLGLWDTAG  66
            K V+ GD  VGKT LL  +  + F  +Y  T+   F   T     D G+ I L +WDTAG
Sbjct  1    KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  67   QEDYDRLRPLSYPQTDVFLICFSIVSPPSFDNVKAKWYPEIEHHAPNVPIILVGTKLD  124
            QE +  L P  Y      L+ +      +F N+K  W  E++ +A N P+ILVG K+D
Sbjct  61   QERFRSLHPFYYRGAAAALLVYDS---RTFSNLK-YWLRELKKYAGNSPVILVGNKID  114



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00026661

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  153     8e-50
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  70.2    2e-17


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 153 bits (390),  Expect = 8e-50, Method: Composition-based stats.
 Identities = 49/91 (54%), Positives = 62/91 (68%), Gaps = 1/91 (1%)

Query  11  KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYTASVMVDGRPISLGLWDTAGQED  69
           K V+ GDG VGK+ LLI +T N FP EYIPT+  D YT ++ VDG+ + L +WDTAGQE 
Sbjct  1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER  60

Query  70  YDRLRPLSYPQTDVFLICFSIVSPPSFDNVK  100
           +  LRPL Y   D FL+ + I S  SF+NVK
Sbjct  61  FRALRPLYYRGADGFLLVYDITSRDSFENVK  91


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 70.2 bits (173),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 45/94 (48%), Gaps = 7/94 (7%)

Query  11  KCVVTGDGAVGKTCLLISYTTNAFPGEYIPTV---FDNYTASVMVD-GRPISLGLWDTAG  66
           K V+ GD  VGKT LL  +  + F  +Y  T+   F   T     D G+ I L +WDTAG
Sbjct  1   KVVLLGDSGVGKTSLLKRFVDDTFDPKYKSTIGVDFKTKTVLENDDNGKKIKLNIWDTAG  60

Query  67  QEDYDRLRPLSYPQTDVFLICFSIVSPPSFDNVK  100
           QE +  L P  Y      L+ +      +F N+K
Sbjct  61  QERFRSLHPFYYRGAAAALLVYDS---RTFSNLK  91



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00021612

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00021613

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  181     3e-59
CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkina...  69.1    5e-16


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 181 bits (461),  Expect = 3e-59, Method: Composition-based stats.
 Identities = 63/148 (43%), Positives = 82/148 (55%), Gaps = 15/148 (10%)

Query  36   DSTSRFDNYTASVMVDGRPISLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSPPSFD  95
              T   D YT ++ VDG+ + L +WDTAGQE +  LRPL Y   D FL+ + I S  SF+
Sbjct  29   IPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRALRPLYYRGADGFLLVYDITSRDSFE  88

Query  96   NVKAKWYPEIEHHAP-NVPIILVGTKLDLRDDPATAESLRQRKMEPVSYEQALAVAKEIR  154
            NVK KW  EI  HA  NVPI+LVG K DL D               VS E+  A+AKE+ 
Sbjct  89   NVK-KWVEEILRHADENVPIVLVGNKCDLEDQ------------RVVSTEEGEALAKELG  135

Query  155  AHKYLECSALTQRNLKSVFDEAIRAVLN  182
               ++E SA T  N++  F+E  R +L 
Sbjct  136  L-PFMETSAKTNENVEEAFEELAREILK  162


>CDD:462490 pfam08477, Roc, Ras of Complex, Roc, domain of DAPkinase.  Roc, 
or Ras of Complex, proteins are mitochondrial Rho proteins 
(Miro-1, and Miro-2) and atypical Rho GTPases. Full-length 
proteins have a unique domain organisation, with tandem GTP-binding 
domains and two EF hand domains (pfam00036) that may 
bind calcium. They are also larger than classical small GTPases. 
It has been proposed that they are involved in mitochondrial 
homeostasis and apoptosis.
Length=114

 Score = 69.1 bits (170),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 28/72 (39%), Positives = 41/72 (57%), Gaps = 4/72 (6%)

Query  51   DGRPISLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSPPSFDNVKAKWYPEIEHHAP  110
            +G+ I L +WDTAGQE +  L P  Y      L+ +      +F N+K  W  E++ +A 
Sbjct  47   NGKKIKLNIWDTAGQERFRSLHPFYYRGAAAALLVYDS---RTFSNLK-YWLRELKKYAG  102

Query  111  NVPIILVGTKLD  122
            N P+ILVG K+D
Sbjct  103  NSPVILVGNKID  114



Lambda      K        H        a         alpha
   0.320    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00021614

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.145    0.571    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00021615

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.146    0.578    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00021616

Length=119
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460447 pfam02104, SURF1, SURF1 family                             85.5    1e-22


>CDD:460447 pfam02104, SURF1, SURF1 family.  
Length=195

 Score = 85.5 bits (212),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 16/117 (14%)

Query  1    MLIGPRMREGQEGFIVVTPLERGEGESTILVNRGWISKKMMNKKDRAIGLPQGEVVVEGL  60
            +L+G R+   + G+ V+TPL   +   T+LVNRGW+         R    P G V V G 
Sbjct  67   VLVGNRVGRPR-GYHVLTPLRLTDDGRTVLVNRGWVPAGADKLPARP---PAGPVRVTGR  122

Query  61   LREPWKKNMFTPENKPEEGKFYFPDVHQMAELTG-----SQPIWIEQTMGKQIPSRA  112
            LR P              G++Y  DV  +A   G       P+ I+           
Sbjct  123  LRAP-------EGGGAPGGQWYSIDVAALAAALGLLLPRPAPVLIDADADPPDGGIG  172



Lambda      K        H        a         alpha
   0.316    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00026662

Length=119
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460447 pfam02104, SURF1, SURF1 family                             85.5    1e-22


>CDD:460447 pfam02104, SURF1, SURF1 family.  
Length=195

 Score = 85.5 bits (212),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 16/117 (14%)

Query  1    MLIGPRMREGQEGFIVVTPLERGEGESTILVNRGWISKKMMNKKDRAIGLPQGEVVVEGL  60
            +L+G R+   + G+ V+TPL   +   T+LVNRGW+         R    P G V V G 
Sbjct  67   VLVGNRVGRPR-GYHVLTPLRLTDDGRTVLVNRGWVPAGADKLPARP---PAGPVRVTGR  122

Query  61   LREPWKKNMFTPENKPEEGKFYFPDVHQMAELTG-----SQPIWIEQTMGKQIPSRA  112
            LR P              G++Y  DV  +A   G       P+ I+           
Sbjct  123  LRAP-------EGGGAPGGQWYSIDVAALAAALGLLLPRPAPVLIDADADPPDGGIG  172



Lambda      K        H        a         alpha
   0.316    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00021617

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:434768 pfam15511, CENP-T_C, Centromere kinetochore component ...  185     5e-58


>CDD:434768 pfam15511, CENP-T_C, Centromere kinetochore component CENP-T 
histone fold.  CENP-T is a family of vertebral kinetochore proteins 
that associates directly with CENP-W. The N-terminus 
of CENP-T proteins interacts directly with the Ndc80 complex 
in the outer kinetochore. Importantly, the CENP-T-W complex 
does not directly associate with CENP-A, but with histone 
H3 in the centromere region. CENP-T and -W form a hetero-tetramer 
with CENP-S and -X and bind to a ~100 bp region of nucleosome-free 
DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X 
complex is likely to be associated with histone 
H3-containing nucleosomes rather than with CENP-nucleosomes. 
This domain is the C-terminal histone fold domain of CENP-T, 
which associates with chromatin.
Length=108

 Score = 185 bits (471),  Expect = 5e-58, Method: Composition-based stats.
 Identities = 68/109 (62%), Positives = 87/109 (80%), Gaps = 1/109 (1%)

Query  372  HGIPVPNMPVGVVRKLATRFARARAGSKTKISKATLAAIEQASAWYFEQVSEDLAAYSKH  431
             G  VP++P  VV++LA RFAR   GSK K+SK  LAA+EQAS W+FEQ+ EDLAAY+KH
Sbjct  1    RGHEVPSLPTAVVKRLAQRFARTS-GSKGKLSKEALAALEQASDWFFEQMGEDLAAYAKH  59

Query  432  AGRKTIDETDVTTLLRRQRHINNTTTVFSLAQKYLPKELLQDMRLAMPP  480
            AGRKTIDE+DV  L++RQR I + TT+FSLAQ+YLP+ELLQ++R+  P 
Sbjct  60   AGRKTIDESDVILLMKRQRQITSQTTLFSLAQRYLPRELLQELRMPPPA  108



Lambda      K        H        a         alpha
   0.311    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598144560


Query= TCONS_00021618

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00026663

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00021620

Length=376


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453018240


Query= TCONS_00026664

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00026665

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462514 pfam08546, ApbA_C, Ketopantoate reductase PanE/ApbA C ...  118     5e-33
CDD:426831 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA. Thi...  90.0    4e-22


>CDD:462514 pfam08546, ApbA_C, Ketopantoate reductase PanE/ApbA C terminal. 
 This is a family of 2-dehydropantoate 2-reductases also 
known as ketopantoate reductases, EC:1.1.1.169. The reaction 
catalyzed by this enzyme is: (R)-pantoate + NADP(+) <=> 2-dehydropantoate 
+ NADPH. AbpA catalyzes the NADPH reduction of 
ketopantoic acid to pantoic acid in the alternative pyrimidine 
biosynthetic (APB) pathway. ApbA and PanE are allelic. 
ApbA, the ketopantoate reductase enzyme is required for the 
synthesis of thiamine via the APB biosynthetic pathway.
Length=125

 Score = 118 bits (299),  Expect = 5e-33, Method: Composition-based stats.
 Identities = 50/133 (38%), Positives = 75/133 (56%), Gaps = 9/133 (7%)

Query  261  LLLYQLEKLALNAIINPLTALMDCENGEILYNYSFTRVMRMLLIEISSVICALPELQGIP  320
            + L + EKL +NA INPLTAL  C NGE+L +     ++R L+ E  +V     + +G+ 
Sbjct  2    IRLARWEKLLVNAAINPLTALTGCTNGELLDSPEARALIRALMREAVAVA----QAEGVA  57

Query  321  GIENRFAPERLRSMVTKLANQTAKNTSSMLADVRSGKTTEIEYINGYIVRRGEELGIKCA  380
                  + +RL   V  +  +T  N SSML DV +G+ TEI+YINGY+VR   + G+   
Sbjct  58   -----LSEDRLIEYVLAVLRKTPDNKSSMLQDVEAGRPTEIDYINGYVVRLARKHGVPTP  112

Query  381  VNYMIKHLVLAKQ  393
             N  +  L+ AK+
Sbjct  113  TNETLYALLKAKE  125


>CDD:426831 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA.  This is a 
family of 2-dehydropantoate 2-reductases also known as ketopantoate 
reductases, EC:1.1.1.169. The reaction catalyzed by 
this enzyme is: (R)-pantoate + NADP(+) <=> 2-dehydropantoate 
+ NADPH. AbpA catalyzes the NADPH reduction of ketopantoic 
acid to pantoic acid in the alternative pyrimidine biosynthetic 
(APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate 
reductase enzyme is required for the synthesis of 
thiamine via the APB biosynthetic pathway.
Length=147

 Score = 90.0 bits (224),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 75/199 (38%), Gaps = 53/199 (27%)

Query  20   IHILGLGNVGTFVAHSLASRPSPPPITLLLHSRDLYGAWLAKKKCLAVNTNGLD-DIKTG  78
            I ILG G +G+ +   LA   +   +TL+L   +L           A+  NGL      G
Sbjct  1    IAILGAGAIGSLLGARLAK--AGHDVTLILRGAEL----------AAIKKNGLRLTSPGG  48

Query  79   FDVNVLSDRTWYSLPYWNQNGEPNTNGDSVTEENLEAGVEESLSQSEEDDEHIECLIVAV  138
                   +R                                    + E    I+ +IV V
Sbjct  49   -------ERIVPPPAVT---------------------------SASESLGPIDLVIVTV  74

Query  139  KAPMTARALESVSHRLTPDSTVLLLQNGMGTIEEINEKVFPDPHQRPHYMCGIISHGLAR  198
            KA  T  ALE ++  L P++ VLLLQNG+G  E +  +  P    R   + G+ +HG A 
Sbjct  75   KAYQTEEALEDIAPLLGPNTVVLLLQNGLGHEEVL-REAVP----RERVLGGVTTHG-AF  128

Query  199  KRDAFHVTHTGIGTTIISP  217
            +    HV H G G   I  
Sbjct  129  REGPGHVHHAGPGRITIGE  147



Lambda      K        H        a         alpha
   0.316    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00026666

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462514 pfam08546, ApbA_C, Ketopantoate reductase PanE/ApbA C ...  118     5e-33
CDD:426831 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA. Thi...  90.0    4e-22


>CDD:462514 pfam08546, ApbA_C, Ketopantoate reductase PanE/ApbA C terminal. 
 This is a family of 2-dehydropantoate 2-reductases also 
known as ketopantoate reductases, EC:1.1.1.169. The reaction 
catalyzed by this enzyme is: (R)-pantoate + NADP(+) <=> 2-dehydropantoate 
+ NADPH. AbpA catalyzes the NADPH reduction of 
ketopantoic acid to pantoic acid in the alternative pyrimidine 
biosynthetic (APB) pathway. ApbA and PanE are allelic. 
ApbA, the ketopantoate reductase enzyme is required for the 
synthesis of thiamine via the APB biosynthetic pathway.
Length=125

 Score = 118 bits (299),  Expect = 5e-33, Method: Composition-based stats.
 Identities = 50/133 (38%), Positives = 75/133 (56%), Gaps = 9/133 (7%)

Query  261  LLLYQLEKLALNAIINPLTALMDCENGEILYNYSFTRVMRMLLIEISSVICALPELQGIP  320
            + L + EKL +NA INPLTAL  C NGE+L +     ++R L+ E  +V     + +G+ 
Sbjct  2    IRLARWEKLLVNAAINPLTALTGCTNGELLDSPEARALIRALMREAVAVA----QAEGVA  57

Query  321  GIENRFAPERLRSMVTKLANQTAKNTSSMLADVRSGKTTEIEYINGYIVRRGEELGIKCA  380
                  + +RL   V  +  +T  N SSML DV +G+ TEI+YINGY+VR   + G+   
Sbjct  58   -----LSEDRLIEYVLAVLRKTPDNKSSMLQDVEAGRPTEIDYINGYVVRLARKHGVPTP  112

Query  381  VNYMIKHLVLAKQ  393
             N  +  L+ AK+
Sbjct  113  TNETLYALLKAKE  125


>CDD:426831 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA.  This is a 
family of 2-dehydropantoate 2-reductases also known as ketopantoate 
reductases, EC:1.1.1.169. The reaction catalyzed by 
this enzyme is: (R)-pantoate + NADP(+) <=> 2-dehydropantoate 
+ NADPH. AbpA catalyzes the NADPH reduction of ketopantoic 
acid to pantoic acid in the alternative pyrimidine biosynthetic 
(APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate 
reductase enzyme is required for the synthesis of 
thiamine via the APB biosynthetic pathway.
Length=147

 Score = 90.0 bits (224),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 75/199 (38%), Gaps = 53/199 (27%)

Query  20   IHILGLGNVGTFVAHSLASRPSPPPITLLLHSRDLYGAWLAKKKCLAVNTNGLD-DIKTG  78
            I ILG G +G+ +   LA   +   +TL+L   +L           A+  NGL      G
Sbjct  1    IAILGAGAIGSLLGARLAK--AGHDVTLILRGAEL----------AAIKKNGLRLTSPGG  48

Query  79   FDVNVLSDRTWYSLPYWNQNGEPNTNGDSVTEENLEAGVEESLSQSEEDDEHIECLIVAV  138
                   +R                                    + E    I+ +IV V
Sbjct  49   -------ERIVPPPAVT---------------------------SASESLGPIDLVIVTV  74

Query  139  KAPMTARALESVSHRLTPDSTVLLLQNGMGTIEEINEKVFPDPHQRPHYMCGIISHGLAR  198
            KA  T  ALE ++  L P++ VLLLQNG+G  E +  +  P    R   + G+ +HG A 
Sbjct  75   KAYQTEEALEDIAPLLGPNTVVLLLQNGLGHEEVL-REAVP----RERVLGGVTTHG-AF  128

Query  199  KRDAFHVTHTGIGTTIISP  217
            +    HV H G G   I  
Sbjct  129  REGPGHVHHAGPGRITIGE  147



Lambda      K        H        a         alpha
   0.316    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00021622

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462514 pfam08546, ApbA_C, Ketopantoate reductase PanE/ApbA C ...  118     5e-33
CDD:426831 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA. Thi...  90.0    4e-22


>CDD:462514 pfam08546, ApbA_C, Ketopantoate reductase PanE/ApbA C terminal. 
 This is a family of 2-dehydropantoate 2-reductases also 
known as ketopantoate reductases, EC:1.1.1.169. The reaction 
catalyzed by this enzyme is: (R)-pantoate + NADP(+) <=> 2-dehydropantoate 
+ NADPH. AbpA catalyzes the NADPH reduction of 
ketopantoic acid to pantoic acid in the alternative pyrimidine 
biosynthetic (APB) pathway. ApbA and PanE are allelic. 
ApbA, the ketopantoate reductase enzyme is required for the 
synthesis of thiamine via the APB biosynthetic pathway.
Length=125

 Score = 118 bits (299),  Expect = 5e-33, Method: Composition-based stats.
 Identities = 50/133 (38%), Positives = 75/133 (56%), Gaps = 9/133 (7%)

Query  261  LLLYQLEKLALNAIINPLTALMDCENGEILYNYSFTRVMRMLLIEISSVICALPELQGIP  320
            + L + EKL +NA INPLTAL  C NGE+L +     ++R L+ E  +V     + +G+ 
Sbjct  2    IRLARWEKLLVNAAINPLTALTGCTNGELLDSPEARALIRALMREAVAVA----QAEGVA  57

Query  321  GIENRFAPERLRSMVTKLANQTAKNTSSMLADVRSGKTTEIEYINGYIVRRGEELGIKCA  380
                  + +RL   V  +  +T  N SSML DV +G+ TEI+YINGY+VR   + G+   
Sbjct  58   -----LSEDRLIEYVLAVLRKTPDNKSSMLQDVEAGRPTEIDYINGYVVRLARKHGVPTP  112

Query  381  VNYMIKHLVLAKQ  393
             N  +  L+ AK+
Sbjct  113  TNETLYALLKAKE  125


>CDD:426831 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA.  This is a 
family of 2-dehydropantoate 2-reductases also known as ketopantoate 
reductases, EC:1.1.1.169. The reaction catalyzed by 
this enzyme is: (R)-pantoate + NADP(+) <=> 2-dehydropantoate 
+ NADPH. AbpA catalyzes the NADPH reduction of ketopantoic 
acid to pantoic acid in the alternative pyrimidine biosynthetic 
(APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate 
reductase enzyme is required for the synthesis of 
thiamine via the APB biosynthetic pathway.
Length=147

 Score = 90.0 bits (224),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 75/199 (38%), Gaps = 53/199 (27%)

Query  20   IHILGLGNVGTFVAHSLASRPSPPPITLLLHSRDLYGAWLAKKKCLAVNTNGLD-DIKTG  78
            I ILG G +G+ +   LA   +   +TL+L   +L           A+  NGL      G
Sbjct  1    IAILGAGAIGSLLGARLAK--AGHDVTLILRGAEL----------AAIKKNGLRLTSPGG  48

Query  79   FDVNVLSDRTWYSLPYWNQNGEPNTNGDSVTEENLEAGVEESLSQSEEDDEHIECLIVAV  138
                   +R                                    + E    I+ +IV V
Sbjct  49   -------ERIVPPPAVT---------------------------SASESLGPIDLVIVTV  74

Query  139  KAPMTARALESVSHRLTPDSTVLLLQNGMGTIEEINEKVFPDPHQRPHYMCGIISHGLAR  198
            KA  T  ALE ++  L P++ VLLLQNG+G  E +  +  P    R   + G+ +HG A 
Sbjct  75   KAYQTEEALEDIAPLLGPNTVVLLLQNGLGHEEVL-REAVP----RERVLGGVTTHG-AF  128

Query  199  KRDAFHVTHTGIGTTIISP  217
            +    HV H G G   I  
Sbjct  129  REGPGHVHHAGPGRITIGE  147



Lambda      K        H        a         alpha
   0.316    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00026667

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461522 pfam05019, Coq4, Coenzyme Q (ubiquinone) biosynthesis ...  335     2e-119


>CDD:461522 pfam05019, Coq4, Coenzyme Q (ubiquinone) biosynthesis protein 
Coq4.  Coq4p was shown to peripherally associate with the matrix 
face of the mitochondrial inner membrane. The putative 
mitochondrial- targeting sequence present at the amino-terminus 
of the polypeptide efficiently imported it to mitochondria. 
The function of Coq4p is unknown, although its presence 
is required to maintain a steady-state level of Coq7p, another 
component of the Q biosynthetic pathway. The overall structure 
of Coq4 is alpha helical and shows resemblance to haemoglobin/myoglobin 
(information from TOPSAN).
Length=213

 Score = 335 bits (861),  Expect = 2e-119, Method: Composition-based stats.
 Identities = 123/170 (72%), Positives = 141/170 (83%), Gaps = 1/170 (1%)

Query  1    MLSDPTGRRILRDRPRITSETLKLPYLRTLPENSVGRTYATWLDREGVSPDTRNSVKYID  60
            MLSDPTGRRILR+RPRITSETL L  LR LPEN+ GR YA WLDREGV+PDTR  V+YID
Sbjct  44   MLSDPTGRRILRERPRITSETLDLEKLRALPENTFGRAYAKWLDREGVTPDTRAPVRYID  103

Query  61   DEECAYVMQRYRECHDFYHAVTGLPTFVEGELALKAFEFLNTLIPMTGLS-IFAFVRLKP  119
            D E AYVMQRYRECHDFYHA+TGLPT VEGE+A+K FEF NT +PM GLS +F  +RLKP
Sbjct  104  DPELAYVMQRYRECHDFYHALTGLPTNVEGEIAVKWFEFANTGLPMAGLSALFGPLRLKP  163

Query  120  AERERFFSLHLPWAVRSGLASKELINVYWEEILEKDVDELRKELGIERPP  169
             +R R F ++LPWA+R+GL +K LINVYWEE  E D++ELRKELGIE PP
Sbjct  164  KQRRRLFEIYLPWAIRNGLNAKPLINVYWEERWETDIEELRKELGIEPPP  213



Lambda      K        H        a         alpha
   0.321    0.138    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00021623

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461522 pfam05019, Coq4, Coenzyme Q (ubiquinone) biosynthesis ...  404     3e-145


>CDD:461522 pfam05019, Coq4, Coenzyme Q (ubiquinone) biosynthesis protein 
Coq4.  Coq4p was shown to peripherally associate with the matrix 
face of the mitochondrial inner membrane. The putative 
mitochondrial- targeting sequence present at the amino-terminus 
of the polypeptide efficiently imported it to mitochondria. 
The function of Coq4p is unknown, although its presence 
is required to maintain a steady-state level of Coq7p, another 
component of the Q biosynthetic pathway. The overall structure 
of Coq4 is alpha helical and shows resemblance to haemoglobin/myoglobin 
(information from TOPSAN).
Length=213

 Score = 404 bits (1041),  Expect = 3e-145, Method: Composition-based stats.
 Identities = 147/213 (69%), Positives = 172/213 (81%), Gaps = 2/213 (1%)

Query  50   FERGALAVGSAVGSLMNPRRADLIAALGEATATPYFIYRLRDAMLSDPTGRRILRDRPRI  109
             E+  LAVGSA+G+L++P R D+IAALGE T  P  + RLRD MLSDPTGRRILR+RPRI
Sbjct  2    LEKLLLAVGSAIGALLDPERGDMIAALGETTGGPA-LERLRDQMLSDPTGRRILRERPRI  60

Query  110  TSETLKLPYLRTLPENSVGRTYATWLDREGVSPDTRNSVKYIDDEECAYVMQRYRECHDF  169
            TSETL L  LR LPEN+ GR YA WLDREGV+PDTR  V+YIDD E AYVMQRYRECHDF
Sbjct  61   TSETLDLEKLRALPENTFGRAYAKWLDREGVTPDTRAPVRYIDDPELAYVMQRYRECHDF  120

Query  170  YHAVTGLPTFVEGELALKAFEFLNTLIPMTGLS-IFAFVRLKPAERERFFSLHLPWAVRS  228
            YHA+TGLPT VEGE+A+K FEF NT +PM GLS +F  +RLKP +R R F ++LPWA+R+
Sbjct  121  YHALTGLPTNVEGEIAVKWFEFANTGLPMAGLSALFGPLRLKPKQRRRLFEIYLPWAIRN  180

Query  229  GLASKELINVYWEEILEKDVDELRKELGIERPP  261
            GL +K LINVYWEE  E D++ELRKELGIE PP
Sbjct  181  GLNAKPLINVYWEERWETDIEELRKELGIEPPP  213



Lambda      K        H        a         alpha
   0.322    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00021624

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461522 pfam05019, Coq4, Coenzyme Q (ubiquinone) biosynthesis ...  335     2e-119


>CDD:461522 pfam05019, Coq4, Coenzyme Q (ubiquinone) biosynthesis protein 
Coq4.  Coq4p was shown to peripherally associate with the matrix 
face of the mitochondrial inner membrane. The putative 
mitochondrial- targeting sequence present at the amino-terminus 
of the polypeptide efficiently imported it to mitochondria. 
The function of Coq4p is unknown, although its presence 
is required to maintain a steady-state level of Coq7p, another 
component of the Q biosynthetic pathway. The overall structure 
of Coq4 is alpha helical and shows resemblance to haemoglobin/myoglobin 
(information from TOPSAN).
Length=213

 Score = 335 bits (861),  Expect = 2e-119, Method: Composition-based stats.
 Identities = 123/170 (72%), Positives = 141/170 (83%), Gaps = 1/170 (1%)

Query  1    MLSDPTGRRILRDRPRITSETLKLPYLRTLPENSVGRTYATWLDREGVSPDTRNSVKYID  60
            MLSDPTGRRILR+RPRITSETL L  LR LPEN+ GR YA WLDREGV+PDTR  V+YID
Sbjct  44   MLSDPTGRRILRERPRITSETLDLEKLRALPENTFGRAYAKWLDREGVTPDTRAPVRYID  103

Query  61   DEECAYVMQRYRECHDFYHAVTGLPTFVEGELALKAFEFLNTLIPMTGLS-IFAFVRLKP  119
            D E AYVMQRYRECHDFYHA+TGLPT VEGE+A+K FEF NT +PM GLS +F  +RLKP
Sbjct  104  DPELAYVMQRYRECHDFYHALTGLPTNVEGEIAVKWFEFANTGLPMAGLSALFGPLRLKP  163

Query  120  AERERFFSLHLPWAVRSGLASKELINVYWEEILEKDVDELRKELGIERPP  169
             +R R F ++LPWA+R+GL +K LINVYWEE  E D++ELRKELGIE PP
Sbjct  164  KQRRRLFEIYLPWAIRNGLNAKPLINVYWEERWETDIEELRKELGIEPPP  213



Lambda      K        H        a         alpha
   0.321    0.138    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00021625

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00021626

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403444 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP2...  167     1e-50
CDD:460339 pfam01805, Surp, Surp module. This domain is also know...  77.2    1e-18


>CDD:403444 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like 
protein.  This domain family is found in eukaryotes, and is 
typically between 212 and 238 amino acids in length. The family 
is found in association with pfam01805. There are two completely 
conserved residues (W and H) that may be functionally 
important. PRP21 is required for assembly of the prespliceosome 
and it interacts with U2 snRNP and/or pre-mRNA in the 
prespliceosome. This family also contains proteins similar 
to PRP21, such as the mammalian SF3a. SF3a also interacts with 
U2 snRNP from the prespliceosome, converting it to its active 
form.
Length=213

 Score = 167 bits (426),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 94/263 (36%), Positives = 132/263 (50%), Gaps = 55/263 (21%)

Query  85   NVKNKFHILERAKQRAEWVKYQEQQKQKKEEEEEQERIAYAQIDWHDFVVVETVLFTEAD  144
            N+ +K HIL RA +RAEW K++EQ++QKKEEEEE+ERIA+A IDWHDFVVVET+ F ++D
Sbjct  1    NLSDKQHILSRAYKRAEWRKHKEQEEQKKEEEEEEERIAFASIDWHDFVVVETIEFDDSD  60

Query  145  DQADLPPPTSLNDLQSASLEQKAMMSLNPLRIEEAMPTDQGAQVYYNAYPPTQPEPVAHP  204
            +  +LP P +L  L   SLEQK+        +EEA P                       
Sbjct  61   EVLELPKPLTLEQLIYRSLEQKSKA------LEEADPVT---------------------  93

Query  205  APPSVSPYPPQAPVPQPYPMASAAAQEEEQRIRERMEAREQAAAAQAAAKAGPGQQPMRI  264
                                     +  + +I ++ +    + +             M+I
Sbjct  94   --------------DVEMEEDEEEEEPSKDKIAKKSKPSAVSDSPPKN---------MKI  130

Query  265  RSDYVPRAQARRLNPSGA---TALCPNCHQQIPVAELDQHMRIELLDPRWKEQRAKA--E  319
            R+   PR + R+     A    A CP   Q IP  E D+HMRI LLDPR+KEQ+ K   +
Sbjct  131  RAAGEPRLKKRKNPTPPAQKKKAKCPITGQLIPEDEFDEHMRILLLDPRYKEQKDKYVQK  190

Query  320  SRSATTNLSTADVVNNLKRLASQ  342
            +   ++NL+T DV  NLKRLA +
Sbjct  191  NFKESSNLTTDDVYRNLKRLAKK  213


>CDD:460339 pfam01805, Surp, Surp module.  This domain is also known as the 
SWAP domain. SWAP stands for Suppressor-of-White-APricot. 
It has been suggested that these domains may be RNA binding.
Length=52

 Score = 77.2 bits (191),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 19/52 (37%), Positives = 31/52 (60%), Gaps = 1/52 (2%)

Query  10  EVVKLTALYVAKRGKSFMTALSQREARNFQFDFLRPQ-HSLYQFFTRLVDQY  60
           +++K TA +VA+ G  F   L +RE RN QFDFL      L+ ++   +++Y
Sbjct  1   DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFDPDDPLHAYYRWKLEEY  52



Lambda      K        H        a         alpha
   0.313    0.128    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 497069440


Query= TCONS_00021627

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403444 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP2...  167     1e-50
CDD:460339 pfam01805, Surp, Surp module. This domain is also know...  77.2    1e-18


>CDD:403444 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like 
protein.  This domain family is found in eukaryotes, and is 
typically between 212 and 238 amino acids in length. The family 
is found in association with pfam01805. There are two completely 
conserved residues (W and H) that may be functionally 
important. PRP21 is required for assembly of the prespliceosome 
and it interacts with U2 snRNP and/or pre-mRNA in the 
prespliceosome. This family also contains proteins similar 
to PRP21, such as the mammalian SF3a. SF3a also interacts with 
U2 snRNP from the prespliceosome, converting it to its active 
form.
Length=213

 Score = 167 bits (426),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 94/263 (36%), Positives = 132/263 (50%), Gaps = 55/263 (21%)

Query  85   NVKNKFHILERAKQRAEWVKYQEQQKQKKEEEEEQERIAYAQIDWHDFVVVETVLFTEAD  144
            N+ +K HIL RA +RAEW K++EQ++QKKEEEEE+ERIA+A IDWHDFVVVET+ F ++D
Sbjct  1    NLSDKQHILSRAYKRAEWRKHKEQEEQKKEEEEEEERIAFASIDWHDFVVVETIEFDDSD  60

Query  145  DQADLPPPTSLNDLQSASLEQKAMMSLNPLRIEEAMPTDQGAQVYYNAYPPTQPEPVAHP  204
            +  +LP P +L  L   SLEQK+        +EEA P                       
Sbjct  61   EVLELPKPLTLEQLIYRSLEQKSKA------LEEADPVT---------------------  93

Query  205  APPSVSPYPPQAPVPQPYPMASAAAQEEEQRIRERMEAREQAAAAQAAAKAGPGQQPMRI  264
                                     +  + +I ++ +    + +             M+I
Sbjct  94   --------------DVEMEEDEEEEEPSKDKIAKKSKPSAVSDSPPKN---------MKI  130

Query  265  RSDYVPRAQARRLNPSGA---TALCPNCHQQIPVAELDQHMRIELLDPRWKEQRAKA--E  319
            R+   PR + R+     A    A CP   Q IP  E D+HMRI LLDPR+KEQ+ K   +
Sbjct  131  RAAGEPRLKKRKNPTPPAQKKKAKCPITGQLIPEDEFDEHMRILLLDPRYKEQKDKYVQK  190

Query  320  SRSATTNLSTADVVNNLKRLASQ  342
            +   ++NL+T DV  NLKRLA +
Sbjct  191  NFKESSNLTTDDVYRNLKRLAKK  213


>CDD:460339 pfam01805, Surp, Surp module.  This domain is also known as the 
SWAP domain. SWAP stands for Suppressor-of-White-APricot. 
It has been suggested that these domains may be RNA binding.
Length=52

 Score = 77.2 bits (191),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 19/52 (37%), Positives = 31/52 (60%), Gaps = 1/52 (2%)

Query  10  EVVKLTALYVAKRGKSFMTALSQREARNFQFDFLRPQ-HSLYQFFTRLVDQY  60
           +++K TA +VA+ G  F   L +RE RN QFDFL      L+ ++   +++Y
Sbjct  1   DIIKKTAQFVARNGPEFEALLMEREERNPQFDFLFDPDDPLHAYYRWKLEEY  52



Lambda      K        H        a         alpha
   0.313    0.128    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 497069440


Query= TCONS_00021628

Length=705
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428938 pfam06428, Sec2p, GDP/GTP exchange factor Sec2p. In Sa...  140     3e-40


>CDD:428938 pfam06428, Sec2p, GDP/GTP exchange factor Sec2p.  In Saccharomyces 
cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, 
which is required for vesicular transport at the post-Golgi 
stage of yeast secretion.
Length=92

 Score = 140 bits (356),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 55/88 (63%), Positives = 66/88 (75%), Gaps = 0/88 (0%)

Query  201  LAEEKAQRAIVEKSKKTIEQELETLTAALFEEANKMVAAAKLEREAVEKKNEQLRAQVKD  260
            L EEK +R   EK KK +E+ELE LTA+LFEEANKMVAAA+ E+ AVE KN+QL+ Q+K+
Sbjct  2    LKEEKKKRLEAEKEKKKLEKELEDLTASLFEEANKMVAAARREKHAVEIKNDQLKEQLKE  61

Query  261  TELLLASHQEQLAELKSVMQGMNIAKDD  288
             E LL S QEQL ELK VMQ M   +DD
Sbjct  62   KETLLESLQEQLKELKQVMQKMEEEQDD  89



Lambda      K        H        a         alpha
   0.310    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 902571480


Query= TCONS_00021629

Length=896
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465056 pfam16192, PMT_4TMC, C-terminal four TMM region of pro...  290     3e-93
CDD:396786 pfam02366, PMT, Dolichyl-phosphate-mannose-protein man...  265     3e-83
CDD:397103 pfam02815, MIR, MIR domain. The MIR (protein mannosylt...  183     7e-54


>CDD:465056 pfam16192, PMT_4TMC, C-terminal four TMM region of protein-O-mannosyltransferase. 
 PMT_4TMC is the C-terminal four membrane-pass 
region of protein-O-mannosyltransferases and similar 
enzymes.
Length=198

 Score = 290 bits (745),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 107/197 (54%), Positives = 130/197 (66%), Gaps = 3/197 (2%)

Query  561  KFWELQKVMWTTNAGLTESHAWDSRPPSWPTLLRGINFWGRDHR--QIYLLGNPFIWWSS  618
            KF ELQK M T+N GLT SH + SRP  WP LLRGI FWG D R  QIYLLGNP IWWSS
Sbjct  2    KFIELQKAMLTSNNGLTPSHPYASRPWEWPLLLRGIRFWGWDDRNAQIYLLGNPVIWWSS  61

Query  619  TAAIVVYIVFKGIAVIRWQRSCGDYR-NVNFKRFDYEVGTSVLGWAFHYFPFYLMARQLF  677
            TAAI+V+++     ++RWQR   D   +    RF Y  G  +LGWA HY PF+LM RQLF
Sbjct  62   TAAILVFVLLLLAYLLRWQRGYYDLSDDWTRSRFYYSGGFLLLGWALHYLPFFLMGRQLF  121

Query  678  LHHYFPALYFALMALCQEFDFIANRFKSFGLSSRPIIGKGLVAVFLALSIFTFTLYSPLV  737
            LHHY PALYFA++AL    DF+ + F+    S R  +G  +V V LAL I+ F  +SPL 
Sbjct  122  LHHYLPALYFAILALGALLDFLLSLFRRLPRSLRKRVGYAIVVVLLALVIYVFIYFSPLT  181

Query  738  YGNPWTQDACKKVKLVS  754
            YG P T + CKK+K +S
Sbjct  182  YGMPGTSEECKKLKWLS  198


>CDD:396786 pfam02366, PMT, Dolichyl-phosphate-mannose-protein mannosyltransferase. 
 This is a family of Dolichyl-phosphate-mannose-protein 
mannosyltransferase proteins EC:2.4.1.109. These proteins 
are responsible for O-linked glycosylation of proteins, 
they catalyze the reaction:- Dolichyl phosphate D-mannose + 
protein <=> dolichyl phosphate + O-D-mannosyl-protein. Also 
in this family is Drosophila rotated abdomen protein which 
is a putative mannosyltransferase. This family appears to be 
distantly related to pfam02516 (A Bateman pers. obs.). This 
family also contains sequences from ArnTs (4-amino-4-deoxy-L-arabinose 
lipid A transferase). They catalyze the addition 
of 4-amino-4-deoxy-l-arabinose (l-Ara4N) to the lipid A moiety 
of the lipopolysaccharide. This is a critical modification 
enabling bacteria (e.g. Escherichia coli and Salmonella typhimurium) 
to resist killing by antimicrobial peptides such 
as polymyxins. Members such as undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose 
arabinosyl transferase are predicted 
to have 12 trans-membrane regions. The N-terminal portion 
of these proteins is hypothesized to have a conserved glycosylation 
activity which is shared between distantly related 
oligosaccharyltransferases ArnT and PglB families.
Length=245

 Score = 265 bits (680),  Expect = 3e-83, Method: Composition-based stats.
 Identities = 126/238 (53%), Positives = 149/238 (63%), Gaps = 7/238 (3%)

Query  75   RIYQPSSVVFDEVHFGGFASKYIKGRFFMDVHPPLAKLLITLAGWLAGFDGNFDFKDIGK  134
             +Y P+ VVFDEVHFG FAS Y +  FFMDVHPPL K+LI L G LAG+DGNF F  IG 
Sbjct  14   NLYNPNLVVFDEVHFGKFASYYAEISFFMDVHPPLGKMLIALGGRLAGYDGNFTFISIGG  73

Query  135  DYLEPGVPYVAMRLLPAVLGVLTVPLMFLTLKASGCRTITAVLGAGVVIFENGLITQSRL  194
             Y    VPY  MRL  A+LG LTVPL++LT K  G    TA+L A +VI EN  IT SR 
Sbjct  74   QYYPGNVPYFGMRLFSALLGSLTVPLVYLTAKRLGFSKNTALLAALLVILENSFITLSRY  133

Query  195  ILLDSPLVFFTALTALAFTSFTNQQELGPSHAFRGPWWFWLAATGLSLGATLSVKWVGLF  254
            ILLDSPL+FFT L+   F  F  +        F   WW WL  TG++LG  LS K VGLF
Sbjct  134  ILLDSPLLFFTTLSMYCFWKFERKAP------FSRKWWLWLLLTGIALGLALSTKGVGLF  187

Query  255  TVAWVGSLTVLQLWVLWGDAQNVTPRLWFKHFFARVFCLIIVPLGIYCGMFAIHFLCL  312
            TV  VG LT+  LW L GD   +   +W KH FAR+FCLI++P  +Y   F +HF  L
Sbjct  188  TVLPVGLLTIWHLWQLLGDLSLLLKSIW-KHLFARLFCLIVIPWALYLAQFYVHFWLL  244


>CDD:397103 pfam02815, MIR, MIR domain.  The MIR (protein mannosyltransferase, 
IP3R and RyR) domain is a domain that may have a ligand 
transferase function.
Length=185

 Score = 183 bits (467),  Expect = 7e-54, Method: Composition-based stats.
 Identities = 86/188 (46%), Positives = 108/188 (57%), Gaps = 31/188 (16%)

Query  361  HSHAHMYPTGSKQQQ------ITLYPHKDENN----VFILENQTQPLGPFGQVEGPYAWD  410
            HSH   Y TGS+QQQ      ITLYPH D NN    ++ +E                AW 
Sbjct  13   HSHQDEYLTGSEQQQKQPFLRITLYPHGDANNSARSLWRIEVVRHD-----------AW-  60

Query  411  NITTEYIQDGAVVRLYHAMTHRRLHSHDE-RPPVTD-VDWQFEVSAYGYEGFPGDANDLF  468
                  I+ G+  RL H  T R LHSH+E +PP+ +  DWQ EVSAYG+ GFPGD ND+ 
Sbjct  61   --RGGLIKWGSPFRLRHLTTGRYLHSHEEQKPPLVEKEDWQKEVSAYGFRGFPGD-NDI-  116

Query  469  RVEIVKSKSDGEEAKKRLRTIESKFRLVHVMTGCVLFSHKVKLPEWGFD--QQEVTCARG  526
             VEI + KS       R++  +S FRL HV TGC LFSH VKLP+WGF   QQ+VTCA+ 
Sbjct  117  -VEIFEKKSTTGMGSDRIKPGDSYFRLQHVCTGCWLFSHSVKLPKWGFGPEQQKVTCAKE  175

Query  527  GTLPNSLW  534
            G + ++L 
Sbjct  176  GHMDDALT  183



Lambda      K        H        a         alpha
   0.323    0.138    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1149846714


Query= TCONS_00026670

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase. This entry...  146     3e-42


>CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase.  This entry refers 
to the DHHC domain, found in DHHC proteins which are palmitoyltransferases. 
Palmitoylation or, more specifically S-acylation, 
plays important roles in the regulation of protein localization, 
stability, and activity. It is a post-translational 
protein modification that involves the attachment of palmitic 
acid to Cys residues through a thioester linkage. Protein 
acyltransferases (PATs), also known as palmitoyltransferases, 
catalyze this reaction by transferring the palmitoyl 
group from palmitoyl-CoA to the thiol group of Cys residues. 
They are characterized by the presence of a 50-residue-long 
domain called the DHHC domain, which in most but not all cases 
is also cysteine-rich and gets its name from a highly conserved 
DHHC signature tetrapeptide (Asp-His-His-Cys). The Cys 
residue within the DHHC domain forms a stable acyl intermediate 
and transfers the acyl chain to the Cys residues of a 
target protein. Some proteins containing a DHHC domain include 
Drosophila DNZ1 protein, Mouse Abl-philin 2 (Aph2) protein, 
Mammalian ZDHHC9, Yeast ankyrin repeat-containing protein 
AKR1, Yeast Erf2 protein, and Arabidopsis thaliana tip growth 
defective 1.
Length=132

 Score = 146 bits (371),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 0/126 (0%)

Query  405  KYCKTCNIWRPPRCYHCRVCDNCVETLDHHCVWLNNCVGRRNYRYFFAFVSSATLLALFL  464
            KYC TCNI++PPR  HCRVC+ CV   DHHC WLNNC+G+RN++YF  F+   TL  +  
Sbjct  6    KYCSTCNIYKPPRSKHCRVCNRCVLRFDHHCPWLNNCIGKRNHKYFILFLLYLTLYLILY  65

Query  465  LGASLAHVLVYRAREGVSFGSAIDKWRVPWAMVIYGALAAPYPASLWAYHLFLIGRGETT  524
            L  SL +++       + F   +  + +   ++I       +   L  +HL+LI R  TT
Sbjct  66   LVLSLYYLVKLIESSTLFFFLILFLFSISIILLILSLFFLLFLGILLFFHLYLISRNLTT  125

Query  525  REYLNS  530
             E++  
Sbjct  126  YEFMKK  131



Lambda      K        H        a         alpha
   0.318    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00021630

Length=845
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  100     1e-25


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 100 bits (251),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 55/116 (47%), Gaps = 11/116 (9%)

Query  481  GYGVRSNRTFEPNQIIVEYTGE-IITQAECEKRMRTIYKNNE----CYYLMYFD--QNMI  533
            G G+ +       + I EY    +IT+ E +KR    Y   E      YL   D      
Sbjct  1    GRGLFATEDIPKGEFIGEYVEVLLITKEEADKRELLYYDKLELRLWGPYLFTLDEDSEYC  60

Query  534  IDATR---GSIARFVNHSCEPNCRMEKWTVAGKPRMALFAGDHGIMTGEELTYDYN  586
            IDA     G+ ARF+NHSC+PNC +    V G PR+ +FA    I  GEELT DY 
Sbjct  61   IDARALYYGNWARFINHSCDPNCEVRVVYVNGGPRIVIFA-LRDIKPGEELTIDYG  115



Lambda      K        H        a         alpha
   0.309    0.124    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0726    0.140     1.90     42.6     43.6 

Effective search space used: 1076635500


Query= TCONS_00026671

Length=946
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465056 pfam16192, PMT_4TMC, C-terminal four TMM region of pro...  295     1e-94
CDD:396786 pfam02366, PMT, Dolichyl-phosphate-mannose-protein man...  271     4e-85
CDD:397103 pfam02815, MIR, MIR domain. The MIR (protein mannosylt...  183     7e-54


>CDD:465056 pfam16192, PMT_4TMC, C-terminal four TMM region of protein-O-mannosyltransferase. 
 PMT_4TMC is the C-terminal four membrane-pass 
region of protein-O-mannosyltransferases and similar 
enzymes.
Length=198

 Score = 295 bits (757),  Expect = 1e-94, Method: Composition-based stats.
 Identities = 107/197 (54%), Positives = 130/197 (66%), Gaps = 3/197 (2%)

Query  561  KFWELQKVMWTTNAGLTESHAWDSRPPSWPTLLRGINFWGRDHR--QIYLLGNPFIWWSS  618
            KF ELQK M T+N GLT SH + SRP  WP LLRGI FWG D R  QIYLLGNP IWWSS
Sbjct  2    KFIELQKAMLTSNNGLTPSHPYASRPWEWPLLLRGIRFWGWDDRNAQIYLLGNPVIWWSS  61

Query  619  TAAIVVYIVFKGIAVIRWQRSCGDYR-NVNFKRFDYEVGTSVLGWAFHYFPFYLMARQLF  677
            TAAI+V+++     ++RWQR   D   +    RF Y  G  +LGWA HY PF+LM RQLF
Sbjct  62   TAAILVFVLLLLAYLLRWQRGYYDLSDDWTRSRFYYSGGFLLLGWALHYLPFFLMGRQLF  121

Query  678  LHHYFPALYFALMALCQEFDFIANRFKSFGLSSRPIIGKGLVAVFLALSIFTFTLYSPLV  737
            LHHY PALYFA++AL    DF+ + F+    S R  +G  +V V LAL I+ F  +SPL 
Sbjct  122  LHHYLPALYFAILALGALLDFLLSLFRRLPRSLRKRVGYAIVVVLLALVIYVFIYFSPLT  181

Query  738  YGNPWTQDACKKVKLVS  754
            YG P T + CKK+K +S
Sbjct  182  YGMPGTSEECKKLKWLS  198


>CDD:396786 pfam02366, PMT, Dolichyl-phosphate-mannose-protein mannosyltransferase. 
 This is a family of Dolichyl-phosphate-mannose-protein 
mannosyltransferase proteins EC:2.4.1.109. These proteins 
are responsible for O-linked glycosylation of proteins, 
they catalyze the reaction:- Dolichyl phosphate D-mannose + 
protein <=> dolichyl phosphate + O-D-mannosyl-protein. Also 
in this family is Drosophila rotated abdomen protein which 
is a putative mannosyltransferase. This family appears to be 
distantly related to pfam02516 (A Bateman pers. obs.). This 
family also contains sequences from ArnTs (4-amino-4-deoxy-L-arabinose 
lipid A transferase). They catalyze the addition 
of 4-amino-4-deoxy-l-arabinose (l-Ara4N) to the lipid A moiety 
of the lipopolysaccharide. This is a critical modification 
enabling bacteria (e.g. Escherichia coli and Salmonella typhimurium) 
to resist killing by antimicrobial peptides such 
as polymyxins. Members such as undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose 
arabinosyl transferase are predicted 
to have 12 trans-membrane regions. The N-terminal portion 
of these proteins is hypothesized to have a conserved glycosylation 
activity which is shared between distantly related 
oligosaccharyltransferases ArnT and PglB families.
Length=245

 Score = 271 bits (695),  Expect = 4e-85, Method: Composition-based stats.
 Identities = 126/238 (53%), Positives = 149/238 (63%), Gaps = 7/238 (3%)

Query  75   RIYQPSSVVFDEVHFGGFASKYIKGRFFMDVHPPLAKLLITLAGWLAGFDGNFDFKDIGK  134
             +Y P+ VVFDEVHFG FAS Y +  FFMDVHPPL K+LI L G LAG+DGNF F  IG 
Sbjct  14   NLYNPNLVVFDEVHFGKFASYYAEISFFMDVHPPLGKMLIALGGRLAGYDGNFTFISIGG  73

Query  135  DYLEPGVPYVAMRLLPAVLGVLTVPLMFLTLKASGCRTITAVLGAGVVIFENGLITQSRL  194
             Y    VPY  MRL  A+LG LTVPL++LT K  G    TA+L A +VI EN  IT SR 
Sbjct  74   QYYPGNVPYFGMRLFSALLGSLTVPLVYLTAKRLGFSKNTALLAALLVILENSFITLSRY  133

Query  195  ILLDSPLVFFTALTALAFTSFTNQQELGPSHAFRGPWWFWLAATGLSLGATLSVKWVGLF  254
            ILLDSPL+FFT L+   F  F  +        F   WW WL  TG++LG  LS K VGLF
Sbjct  134  ILLDSPLLFFTTLSMYCFWKFERKAP------FSRKWWLWLLLTGIALGLALSTKGVGLF  187

Query  255  TVAWVGSLTVLQLWVLWGDAQNVTPRLWFKHFFARVFCLIIVPLGIYCGMFAIHFLCL  312
            TV  VG LT+  LW L GD   +   +W KH FAR+FCLI++P  +Y   F +HF  L
Sbjct  188  TVLPVGLLTIWHLWQLLGDLSLLLKSIW-KHLFARLFCLIVIPWALYLAQFYVHFWLL  244


>CDD:397103 pfam02815, MIR, MIR domain.  The MIR (protein mannosyltransferase, 
IP3R and RyR) domain is a domain that may have a ligand 
transferase function.
Length=185

 Score = 183 bits (467),  Expect = 7e-54, Method: Composition-based stats.
 Identities = 86/188 (46%), Positives = 108/188 (57%), Gaps = 31/188 (16%)

Query  361  HSHAHMYPTGSKQQQ------ITLYPHKDENN----VFILENQTQPLGPFGQVEGPYAWD  410
            HSH   Y TGS+QQQ      ITLYPH D NN    ++ +E                AW 
Sbjct  13   HSHQDEYLTGSEQQQKQPFLRITLYPHGDANNSARSLWRIEVVRHD-----------AW-  60

Query  411  NITTEYIQDGAVVRLYHAMTHRRLHSHDE-RPPVTD-VDWQFEVSAYGYEGFPGDANDLF  468
                  I+ G+  RL H  T R LHSH+E +PP+ +  DWQ EVSAYG+ GFPGD ND+ 
Sbjct  61   --RGGLIKWGSPFRLRHLTTGRYLHSHEEQKPPLVEKEDWQKEVSAYGFRGFPGD-NDI-  116

Query  469  RVEIVKSKSDGEEAKKRLRTIESKFRLVHVMTGCVLFSHKVKLPEWGFD--QQEVTCARG  526
             VEI + KS       R++  +S FRL HV TGC LFSH VKLP+WGF   QQ+VTCA+ 
Sbjct  117  -VEIFEKKSTTGMGSDRIKPGDSYFRLQHVCTGCWLFSHSVKLPKWGFGPEQQKVTCAKE  175

Query  527  GTLPNSLW  534
            G + ++L 
Sbjct  176  GHMDDALT  183



Lambda      K        H        a         alpha
   0.322    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1203494600


Query= TCONS_00021631

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase. This entry...  146     3e-42


>CDD:396215 pfam01529, DHHC, DHHC palmitoyltransferase.  This entry refers 
to the DHHC domain, found in DHHC proteins which are palmitoyltransferases. 
Palmitoylation or, more specifically S-acylation, 
plays important roles in the regulation of protein localization, 
stability, and activity. It is a post-translational 
protein modification that involves the attachment of palmitic 
acid to Cys residues through a thioester linkage. Protein 
acyltransferases (PATs), also known as palmitoyltransferases, 
catalyze this reaction by transferring the palmitoyl 
group from palmitoyl-CoA to the thiol group of Cys residues. 
They are characterized by the presence of a 50-residue-long 
domain called the DHHC domain, which in most but not all cases 
is also cysteine-rich and gets its name from a highly conserved 
DHHC signature tetrapeptide (Asp-His-His-Cys). The Cys 
residue within the DHHC domain forms a stable acyl intermediate 
and transfers the acyl chain to the Cys residues of a 
target protein. Some proteins containing a DHHC domain include 
Drosophila DNZ1 protein, Mouse Abl-philin 2 (Aph2) protein, 
Mammalian ZDHHC9, Yeast ankyrin repeat-containing protein 
AKR1, Yeast Erf2 protein, and Arabidopsis thaliana tip growth 
defective 1.
Length=132

 Score = 146 bits (371),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 0/126 (0%)

Query  405  KYCKTCNIWRPPRCYHCRVCDNCVETLDHHCVWLNNCVGRRNYRYFFAFVSSATLLALFL  464
            KYC TCNI++PPR  HCRVC+ CV   DHHC WLNNC+G+RN++YF  F+   TL  +  
Sbjct  6    KYCSTCNIYKPPRSKHCRVCNRCVLRFDHHCPWLNNCIGKRNHKYFILFLLYLTLYLILY  65

Query  465  LGASLAHVLVYRAREGVSFGSAIDKWRVPWAMVIYGALAAPYPASLWAYHLFLIGRGETT  524
            L  SL +++       + F   +  + +   ++I       +   L  +HL+LI R  TT
Sbjct  66   LVLSLYYLVKLIESSTLFFFLILFLFSISIILLILSLFFLLFLGILLFFHLYLISRNLTT  125

Query  525  REYLNS  530
             E++  
Sbjct  126  YEFMKK  131



Lambda      K        H        a         alpha
   0.318    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00021632

Length=845
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  100     1e-25


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 100 bits (251),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 55/116 (47%), Gaps = 11/116 (9%)

Query  481  GYGVRSNRTFEPNQIIVEYTGE-IITQAECEKRMRTIYKNNE----CYYLMYFD--QNMI  533
            G G+ +       + I EY    +IT+ E +KR    Y   E      YL   D      
Sbjct  1    GRGLFATEDIPKGEFIGEYVEVLLITKEEADKRELLYYDKLELRLWGPYLFTLDEDSEYC  60

Query  534  IDATR---GSIARFVNHSCEPNCRMEKWTVAGKPRMALFAGDHGIMTGEELTYDYN  586
            IDA     G+ ARF+NHSC+PNC +    V G PR+ +FA    I  GEELT DY 
Sbjct  61   IDARALYYGNWARFINHSCDPNCEVRVVYVNGGPRIVIFA-LRDIKPGEELTIDYG  115



Lambda      K        H        a         alpha
   0.309    0.124    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1076635500


Query= TCONS_00021633

Length=530


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 664674974


Query= TCONS_00021634

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00021636

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00021635

Length=236


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 251032864


Query= TCONS_00021637

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00026673

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00026674

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00021640

Length=854


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1089555126


Query= TCONS_00021639

Length=854


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1089555126


Query= TCONS_00021638

Length=854


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1089555126


Query= TCONS_00021641

Length=854


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1089555126


Query= TCONS_00021642

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460310 pfam01747, ATP-sulfurylase, ATP-sulfurylase. This doma...  276     2e-93
CDD:396247 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme...  234     9e-78


>CDD:460310 pfam01747, ATP-sulfurylase, ATP-sulfurylase.  This domain is 
the catalytic domain of ATP-sulfurylase or sulfate adenylyltransferase 
EC:2.7.7.4 some of which are part of a bifunctional 
polypeptide chain associated with adenosyl phosphosulphate 
(APS) kinase pfam01583. Both enzymes are required for PAPS 
(phosphoadenosine-phosphosulfate) synthesis from inorganic 
sulphate. ATP sulfurylase catalyzes the synthesis of adenosine-phosphosulfate 
APS from ATP and inorganic sulphate.
Length=213

 Score = 276 bits (709),  Expect = 2e-93, Method: Composition-based stats.
 Identities = 101/189 (53%), Positives = 118/189 (62%), Gaps = 8/189 (4%)

Query  1    MHRAHRELTVRAARARQAN-VLIHPVVGLTKPGDIDHFTRVRAYQALLPRY-PNGMAVLG  58
            +HRAH EL  RA    +A+ +L+HP+VG TKPGD+    RVR Y+ALL  Y P    VL 
Sbjct  31   LHRAHEELMKRALEELEADGLLLHPLVGPTKPGDVPAEVRVRCYEALLENYLPPDRVVLA  90

Query  59   LLGLAMRMGGPREAIWHAIIRKNHGATHFIVGRDHAGPGKNSKGQEFYGPYDAQHAVEKY  118
            LL LAMR  GPREA+ HAIIRKN+G THFIVGRDHAG G       FYGPYDAQ   ++Y
Sbjct  91   LLPLAMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVGD------FYGPYDAQEIFDEY  144

Query  119  REELGIEVVEFQQVTYLPDTDEYKPKDEVPPGVKTLDISGTELRNRLRTGAPIPEWFSYP  178
              ELGIE V F++  Y     E         G   L ISGT++R  LR G   PEWFS P
Sbjct  145  PGELGIEPVPFREAVYCKKCGEMASTKCPHGGEDRLFISGTKVRELLREGEEPPEWFSRP  204

Query  179  EVVKILRES  187
            EV K+LRE 
Sbjct  205  EVAKVLREY  213


>CDD:396247 pfam01583, APS_kinase, Adenylylsulphate kinase.  Enzyme that 
catalyzes the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. 
This domain contains an ATP binding P-loop 
motif.
Length=154

 Score = 234 bits (599),  Expect = 9e-78, Method: Composition-based stats.
 Identities = 81/157 (52%), Positives = 99/157 (63%), Gaps = 3/157 (2%)

Query  194  QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFSREDRHTN  253
            +G TI+LTG   +GK  IA AL+  L +QG RSV +L GD VRH L+ +LGFS EDR  N
Sbjct  1    RGCTIWLTGLSGAGKSTIANALERKLFEQG-RSVYVLDGDNVRHGLNKDLGFSEEDRTEN  59

Query  254  IQRIAFVAGELTRAGAAVIASPIAPYEESRNAARDAVTQAGGNFFLVHVATPLEYCEKTD  313
            I+RI  VA     AG  VI + I+PY E R  AR+      G F  V V TPLE CE+ D
Sbjct  60   IRRIGEVAKLFADAGLIVITAFISPYREDREQARELH--EEGKFIEVFVDTPLEVCEQRD  117

Query  314  KRGIYAKARRGEIKGFTGVDDPYETPSKADLTVDVSK  350
             +G+Y KAR GEIKGFTG+D PYE P   +L +D  K
Sbjct  118  PKGLYKKARAGEIKGFTGIDSPYEAPENPELVLDTDK  154



Lambda      K        H        a         alpha
   0.319    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00021643

Length=587


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 739741860


Query= TCONS_00021644

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465296 pfam16881, LIAS_N, N-terminal domain of lipoyl synthas...  107     2e-29
CDD:427681 pfam04055, Radical_SAM, Radical SAM superfamily. Radic...  91.8    1e-22


>CDD:465296 pfam16881, LIAS_N, N-terminal domain of lipoyl synthase of Radical_SAM 
family.  LIAS_N is found as the N-terminal domain 
of the Radical_SAM family in the members that are lipoyl synthase 
enzymes, particularly the mitochondrial ones in metazoa 
but also those in bacteria.
Length=97

 Score = 107 bits (270),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 40/82 (49%), Positives = 44/82 (54%), Gaps = 5/82 (6%)

Query  55   FKDKLNAGPSFADFVGNGNTPLDPSEAYALKTALVGPAGRKKEMTRLPSWLKTPIPDSKN  114
             ++ L  GP   DFV       D S     K  L  P   K E  RLP WLKT IP  KN
Sbjct  21   KREFLQNGPDLQDFVSGD--LSDKSTWAEYKGNLKRP---KGERLRLPPWLKTKIPLGKN  75

Query  115  YQRLKKDLRGLNLHTVCEEARC  136
            Y ++K  LR LNLHTVCEEARC
Sbjct  76   YNKIKNTLRNLNLHTVCEEARC  97


>CDD:427681 pfam04055, Radical_SAM, Radical SAM superfamily.  Radical SAM 
proteins catalyze diverse reactions, including unusual methylations, 
isomerisation, sulphur insertion, ring formation, 
anaerobic oxidation and protein radical formation.
Length=159

 Score = 91.8 bits (228),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 34/163 (21%), Positives = 67/163 (41%), Gaps = 7/163 (4%)

Query  158  MGDTCTRGCRFCSVKTSRT---PAPLDPHEPENTAEAISRWGLGYVVLTSVDRDDLADGG  214
            +   C   C +C+  + R       L P E    A+ + R G+  V+L   +   L D  
Sbjct  1    ITRGCNLRCTYCAFPSIRARGKGRELSPEEILEEAKELKRLGVEVVILGGGEPLLLPDLV  60

Query  215  ARHFAETVMKIKQKAPSILVECLTGDYAGDLEMVKLVARSGLDVYAHNVETVEALTPQVR  274
                        + A  I +   T     D E+++L+  +GLD  +  +E+ +    ++ 
Sbjct  61   ELLERL---LKLELAEGIRITLETNGTLLDEELLELLKEAGLDRVSIGLESGDDEVLKLI  117

Query  275  DRRANFQQSIRVLEAAKNAQPSLITKTSLMLGLGETDDQLWDA  317
            +R   F++ +  LE  + A    +   +++   GETD+ L + 
Sbjct  118  NRGHTFEEVLEALELLREAG-IPVVTDNIVGLPGETDEDLEET  159



Lambda      K        H        a         alpha
   0.317    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00021645

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465296 pfam16881, LIAS_N, N-terminal domain of lipoyl synthas...  107     2e-29
CDD:427681 pfam04055, Radical_SAM, Radical SAM superfamily. Radic...  91.8    1e-22


>CDD:465296 pfam16881, LIAS_N, N-terminal domain of lipoyl synthase of Radical_SAM 
family.  LIAS_N is found as the N-terminal domain 
of the Radical_SAM family in the members that are lipoyl synthase 
enzymes, particularly the mitochondrial ones in metazoa 
but also those in bacteria.
Length=97

 Score = 107 bits (270),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 40/82 (49%), Positives = 44/82 (54%), Gaps = 5/82 (6%)

Query  55   FKDKLNAGPSFADFVGNGNTPLDPSEAYALKTALVGPAGRKKEMTRLPSWLKTPIPDSKN  114
             ++ L  GP   DFV       D S     K  L  P   K E  RLP WLKT IP  KN
Sbjct  21   KREFLQNGPDLQDFVSGD--LSDKSTWAEYKGNLKRP---KGERLRLPPWLKTKIPLGKN  75

Query  115  YQRLKKDLRGLNLHTVCEEARC  136
            Y ++K  LR LNLHTVCEEARC
Sbjct  76   YNKIKNTLRNLNLHTVCEEARC  97


>CDD:427681 pfam04055, Radical_SAM, Radical SAM superfamily.  Radical SAM 
proteins catalyze diverse reactions, including unusual methylations, 
isomerisation, sulphur insertion, ring formation, 
anaerobic oxidation and protein radical formation.
Length=159

 Score = 91.8 bits (228),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 34/163 (21%), Positives = 67/163 (41%), Gaps = 7/163 (4%)

Query  158  MGDTCTRGCRFCSVKTSRT---PAPLDPHEPENTAEAISRWGLGYVVLTSVDRDDLADGG  214
            +   C   C +C+  + R       L P E    A+ + R G+  V+L   +   L D  
Sbjct  1    ITRGCNLRCTYCAFPSIRARGKGRELSPEEILEEAKELKRLGVEVVILGGGEPLLLPDLV  60

Query  215  ARHFAETVMKIKQKAPSILVECLTGDYAGDLEMVKLVARSGLDVYAHNVETVEALTPQVR  274
                        + A  I +   T     D E+++L+  +GLD  +  +E+ +    ++ 
Sbjct  61   ELLERL---LKLELAEGIRITLETNGTLLDEELLELLKEAGLDRVSIGLESGDDEVLKLI  117

Query  275  DRRANFQQSIRVLEAAKNAQPSLITKTSLMLGLGETDDQLWDA  317
            +R   F++ +  LE  + A    +   +++   GETD+ L + 
Sbjct  118  NRGHTFEEVLEALELLREAG-IPVVTDNIVGLPGETDEDLEET  159



Lambda      K        H        a         alpha
   0.317    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00021646

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465296 pfam16881, LIAS_N, N-terminal domain of lipoyl synthas...  107     2e-29
CDD:427681 pfam04055, Radical_SAM, Radical SAM superfamily. Radic...  91.8    1e-22


>CDD:465296 pfam16881, LIAS_N, N-terminal domain of lipoyl synthase of Radical_SAM 
family.  LIAS_N is found as the N-terminal domain 
of the Radical_SAM family in the members that are lipoyl synthase 
enzymes, particularly the mitochondrial ones in metazoa 
but also those in bacteria.
Length=97

 Score = 107 bits (270),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 40/82 (49%), Positives = 44/82 (54%), Gaps = 5/82 (6%)

Query  55   FKDKLNAGPSFADFVGNGNTPLDPSEAYALKTALVGPAGRKKEMTRLPSWLKTPIPDSKN  114
             ++ L  GP   DFV       D S     K  L  P   K E  RLP WLKT IP  KN
Sbjct  21   KREFLQNGPDLQDFVSGD--LSDKSTWAEYKGNLKRP---KGERLRLPPWLKTKIPLGKN  75

Query  115  YQRLKKDLRGLNLHTVCEEARC  136
            Y ++K  LR LNLHTVCEEARC
Sbjct  76   YNKIKNTLRNLNLHTVCEEARC  97


>CDD:427681 pfam04055, Radical_SAM, Radical SAM superfamily.  Radical SAM 
proteins catalyze diverse reactions, including unusual methylations, 
isomerisation, sulphur insertion, ring formation, 
anaerobic oxidation and protein radical formation.
Length=159

 Score = 91.8 bits (228),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 34/163 (21%), Positives = 67/163 (41%), Gaps = 7/163 (4%)

Query  158  MGDTCTRGCRFCSVKTSRT---PAPLDPHEPENTAEAISRWGLGYVVLTSVDRDDLADGG  214
            +   C   C +C+  + R       L P E    A+ + R G+  V+L   +   L D  
Sbjct  1    ITRGCNLRCTYCAFPSIRARGKGRELSPEEILEEAKELKRLGVEVVILGGGEPLLLPDLV  60

Query  215  ARHFAETVMKIKQKAPSILVECLTGDYAGDLEMVKLVARSGLDVYAHNVETVEALTPQVR  274
                        + A  I +   T     D E+++L+  +GLD  +  +E+ +    ++ 
Sbjct  61   ELLERL---LKLELAEGIRITLETNGTLLDEELLELLKEAGLDRVSIGLESGDDEVLKLI  117

Query  275  DRRANFQQSIRVLEAAKNAQPSLITKTSLMLGLGETDDQLWDA  317
            +R   F++ +  LE  + A    +   +++   GETD+ L + 
Sbjct  118  NRGHTFEEVLEALELLREAG-IPVVTDNIVGLPGETDEDLEET  159



Lambda      K        H        a         alpha
   0.317    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00026676

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465296 pfam16881, LIAS_N, N-terminal domain of lipoyl synthas...  107     2e-29
CDD:427681 pfam04055, Radical_SAM, Radical SAM superfamily. Radic...  91.8    1e-22


>CDD:465296 pfam16881, LIAS_N, N-terminal domain of lipoyl synthase of Radical_SAM 
family.  LIAS_N is found as the N-terminal domain 
of the Radical_SAM family in the members that are lipoyl synthase 
enzymes, particularly the mitochondrial ones in metazoa 
but also those in bacteria.
Length=97

 Score = 107 bits (270),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 40/82 (49%), Positives = 44/82 (54%), Gaps = 5/82 (6%)

Query  55   FKDKLNAGPSFADFVGNGNTPLDPSEAYALKTALVGPAGRKKEMTRLPSWLKTPIPDSKN  114
             ++ L  GP   DFV       D S     K  L  P   K E  RLP WLKT IP  KN
Sbjct  21   KREFLQNGPDLQDFVSGD--LSDKSTWAEYKGNLKRP---KGERLRLPPWLKTKIPLGKN  75

Query  115  YQRLKKDLRGLNLHTVCEEARC  136
            Y ++K  LR LNLHTVCEEARC
Sbjct  76   YNKIKNTLRNLNLHTVCEEARC  97


>CDD:427681 pfam04055, Radical_SAM, Radical SAM superfamily.  Radical SAM 
proteins catalyze diverse reactions, including unusual methylations, 
isomerisation, sulphur insertion, ring formation, 
anaerobic oxidation and protein radical formation.
Length=159

 Score = 91.8 bits (228),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 34/163 (21%), Positives = 67/163 (41%), Gaps = 7/163 (4%)

Query  158  MGDTCTRGCRFCSVKTSRT---PAPLDPHEPENTAEAISRWGLGYVVLTSVDRDDLADGG  214
            +   C   C +C+  + R       L P E    A+ + R G+  V+L   +   L D  
Sbjct  1    ITRGCNLRCTYCAFPSIRARGKGRELSPEEILEEAKELKRLGVEVVILGGGEPLLLPDLV  60

Query  215  ARHFAETVMKIKQKAPSILVECLTGDYAGDLEMVKLVARSGLDVYAHNVETVEALTPQVR  274
                        + A  I +   T     D E+++L+  +GLD  +  +E+ +    ++ 
Sbjct  61   ELLERL---LKLELAEGIRITLETNGTLLDEELLELLKEAGLDRVSIGLESGDDEVLKLI  117

Query  275  DRRANFQQSIRVLEAAKNAQPSLITKTSLMLGLGETDDQLWDA  317
            +R   F++ +  LE  + A    +   +++   GETD+ L + 
Sbjct  118  NRGHTFEEVLEALELLREAG-IPVVTDNIVGLPGETDEDLEET  159



Lambda      K        H        a         alpha
   0.317    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0778    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00026678

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465296 pfam16881, LIAS_N, N-terminal domain of lipoyl synthas...  107     2e-29
CDD:427681 pfam04055, Radical_SAM, Radical SAM superfamily. Radic...  91.8    1e-22


>CDD:465296 pfam16881, LIAS_N, N-terminal domain of lipoyl synthase of Radical_SAM 
family.  LIAS_N is found as the N-terminal domain 
of the Radical_SAM family in the members that are lipoyl synthase 
enzymes, particularly the mitochondrial ones in metazoa 
but also those in bacteria.
Length=97

 Score = 107 bits (270),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 40/82 (49%), Positives = 44/82 (54%), Gaps = 5/82 (6%)

Query  55   FKDKLNAGPSFADFVGNGNTPLDPSEAYALKTALVGPAGRKKEMTRLPSWLKTPIPDSKN  114
             ++ L  GP   DFV       D S     K  L  P   K E  RLP WLKT IP  KN
Sbjct  21   KREFLQNGPDLQDFVSGD--LSDKSTWAEYKGNLKRP---KGERLRLPPWLKTKIPLGKN  75

Query  115  YQRLKKDLRGLNLHTVCEEARC  136
            Y ++K  LR LNLHTVCEEARC
Sbjct  76   YNKIKNTLRNLNLHTVCEEARC  97


>CDD:427681 pfam04055, Radical_SAM, Radical SAM superfamily.  Radical SAM 
proteins catalyze diverse reactions, including unusual methylations, 
isomerisation, sulphur insertion, ring formation, 
anaerobic oxidation and protein radical formation.
Length=159

 Score = 91.8 bits (228),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 34/163 (21%), Positives = 67/163 (41%), Gaps = 7/163 (4%)

Query  158  MGDTCTRGCRFCSVKTSRT---PAPLDPHEPENTAEAISRWGLGYVVLTSVDRDDLADGG  214
            +   C   C +C+  + R       L P E    A+ + R G+  V+L   +   L D  
Sbjct  1    ITRGCNLRCTYCAFPSIRARGKGRELSPEEILEEAKELKRLGVEVVILGGGEPLLLPDLV  60

Query  215  ARHFAETVMKIKQKAPSILVECLTGDYAGDLEMVKLVARSGLDVYAHNVETVEALTPQVR  274
                        + A  I +   T     D E+++L+  +GLD  +  +E+ +    ++ 
Sbjct  61   ELLERL---LKLELAEGIRITLETNGTLLDEELLELLKEAGLDRVSIGLESGDDEVLKLI  117

Query  275  DRRANFQQSIRVLEAAKNAQPSLITKTSLMLGLGETDDQLWDA  317
            +R   F++ +  LE  + A    +   +++   GETD+ L + 
Sbjct  118  NRGHTFEEVLEALELLREAG-IPVVTDNIVGLPGETDEDLEET  159



Lambda      K        H        a         alpha
   0.317    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00026679

Length=287


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00021647

Length=577


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 724797580


Query= TCONS_00021648

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00026680

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00021651

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  74.9    4e-17
CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit R...  62.6    1e-13


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 74.9 bits (185),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (50%), Gaps = 12/111 (11%)

Query  347  RLVKLFTVPELMRWPMVAEQFGPHLCNTDVFNAQPSQSVEDQAHKRWQDLRKRVIEHNVR  406
             L++ F   +L  +  +   +   L   D               +  +DLR+++ EHN+R
Sbjct  5    DLLRAFYSGDLSEFEEILADYKEELLLDDGL------------AEHLEDLRRKIREHNLR  52

Query  407  VVAKYYTRIQMGRLTELLDLAEEETEKYISELVTSKTIYAKIDRPARLVNF  457
             ++K Y+ I +  L +LL L+ +E EK +++L+    I AKID+   +V F
Sbjct  53   QLSKPYSSISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVF  103


>CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit RPN5 C-terminal 
domain.  This is the C-terminal domain of the 26S proteasome 
regulatory subunit RPN5 proteins.This helical domain 
can be found adjacent to pfam01399. The 26S proteasome is 
the major ATP-dependent protease in eukaryotes. Three subcomplexes 
form this degradation machine: the lid, the base, and 
the core. The helices found at the C terminus of each lid subunit 
form a helical bundle that directs the ordered self-assembly 
of the lid subcomplex. This domain which comprises the 
tail of RPN5 along with the tail of Rpn9, are important for 
Rpn12 binding to the lid.
Length=32

 Score = 62.6 bits (153),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 0/32 (0%)

Query  464  DDVLNEWSSDMKSLLGLLERIDHLITKEEMMA  495
            ++VLNEWS ++ SLL L+E+  HLI KEEM+ 
Sbjct  1    NEVLNEWSHNVNSLLELVEKTTHLINKEEMVH  32



Lambda      K        H        a         alpha
   0.318    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00021649

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  74.9    4e-17
CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit R...  62.6    1e-13


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 74.9 bits (185),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (50%), Gaps = 12/111 (11%)

Query  329  RLVKLFTVPELMRWPMVAEQFGPHLCNTDVFNAQPSQSVEDQAHKRWQDLRKRVIEHNVR  388
             L++ F   +L  +  +   +   L   D               +  +DLR+++ EHN+R
Sbjct  5    DLLRAFYSGDLSEFEEILADYKEELLLDDGL------------AEHLEDLRRKIREHNLR  52

Query  389  VVAKYYTRIQMGRLTELLDLAEEETEKYISELVTSKTIYAKIDRPARLVNF  439
             ++K Y+ I +  L +LL L+ +E EK +++L+    I AKID+   +V F
Sbjct  53   QLSKPYSSISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVF  103


>CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit RPN5 C-terminal 
domain.  This is the C-terminal domain of the 26S proteasome 
regulatory subunit RPN5 proteins.This helical domain 
can be found adjacent to pfam01399. The 26S proteasome is 
the major ATP-dependent protease in eukaryotes. Three subcomplexes 
form this degradation machine: the lid, the base, and 
the core. The helices found at the C terminus of each lid subunit 
form a helical bundle that directs the ordered self-assembly 
of the lid subcomplex. This domain which comprises the 
tail of RPN5 along with the tail of Rpn9, are important for 
Rpn12 binding to the lid.
Length=32

 Score = 62.6 bits (153),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 0/32 (0%)

Query  446  DDVLNEWSSDMKSLLGLLERIDHLITKEEMMA  477
            ++VLNEWS ++ SLL L+E+  HLI KEEM+ 
Sbjct  1    NEVLNEWSHNVNSLLELVEKTTHLINKEEMVH  32



Lambda      K        H        a         alpha
   0.317    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00026681

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  74.9    4e-17
CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit R...  62.6    1e-13


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 74.9 bits (185),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (50%), Gaps = 12/111 (11%)

Query  329  RLVKLFTVPELMRWPMVAEQFGPHLCNTDVFNAQPSQSVEDQAHKRWQDLRKRVIEHNVR  388
             L++ F   +L  +  +   +   L   D               +  +DLR+++ EHN+R
Sbjct  5    DLLRAFYSGDLSEFEEILADYKEELLLDDGL------------AEHLEDLRRKIREHNLR  52

Query  389  VVAKYYTRIQMGRLTELLDLAEEETEKYISELVTSKTIYAKIDRPARLVNF  439
             ++K Y+ I +  L +LL L+ +E EK +++L+    I AKID+   +V F
Sbjct  53   QLSKPYSSISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVF  103


>CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit RPN5 C-terminal 
domain.  This is the C-terminal domain of the 26S proteasome 
regulatory subunit RPN5 proteins.This helical domain 
can be found adjacent to pfam01399. The 26S proteasome is 
the major ATP-dependent protease in eukaryotes. Three subcomplexes 
form this degradation machine: the lid, the base, and 
the core. The helices found at the C terminus of each lid subunit 
form a helical bundle that directs the ordered self-assembly 
of the lid subcomplex. This domain which comprises the 
tail of RPN5 along with the tail of Rpn9, are important for 
Rpn12 binding to the lid.
Length=32

 Score = 62.6 bits (153),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 0/32 (0%)

Query  446  DDVLNEWSSDMKSLLGLLERIDHLITKEEMMA  477
            ++VLNEWS ++ SLL L+E+  HLI KEEM+ 
Sbjct  1    NEVLNEWSHNVNSLLELVEKTTHLINKEEMVH  32



Lambda      K        H        a         alpha
   0.317    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00026682

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  74.9    2e-17
CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit R...  63.0    7e-14


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 74.9 bits (185),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (50%), Gaps = 12/111 (11%)

Query  179  RLVKLFTVPELMRWPMVAEQFGPHLCNTDVFNAQPSQSVEDQAHKRWQDLRKRVIEHNVR  238
             L++ F   +L  +  +   +   L   D               +  +DLR+++ EHN+R
Sbjct  5    DLLRAFYSGDLSEFEEILADYKEELLLDDGL------------AEHLEDLRRKIREHNLR  52

Query  239  VVAKYYTRIQMGRLTELLDLAEEETEKYISELVTSKTIYAKIDRPARLVNF  289
             ++K Y+ I +  L +LL L+ +E EK +++L+    I AKID+   +V F
Sbjct  53   QLSKPYSSISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVF  103


>CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit RPN5 C-terminal 
domain.  This is the C-terminal domain of the 26S proteasome 
regulatory subunit RPN5 proteins.This helical domain 
can be found adjacent to pfam01399. The 26S proteasome is 
the major ATP-dependent protease in eukaryotes. Three subcomplexes 
form this degradation machine: the lid, the base, and 
the core. The helices found at the C terminus of each lid subunit 
form a helical bundle that directs the ordered self-assembly 
of the lid subcomplex. This domain which comprises the 
tail of RPN5 along with the tail of Rpn9, are important for 
Rpn12 binding to the lid.
Length=32

 Score = 63.0 bits (154),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 0/32 (0%)

Query  296  DDVLNEWSSDMKSLLGLLERIDHLITKEEMMA  327
            ++VLNEWS ++ SLL L+E+  HLI KEEM+ 
Sbjct  1    NEVLNEWSHNVNSLLELVEKTTHLINKEEMVH  32



Lambda      K        H        a         alpha
   0.319    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00021650

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  74.9    2e-17
CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit R...  63.0    7e-14


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 74.9 bits (185),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (50%), Gaps = 12/111 (11%)

Query  179  RLVKLFTVPELMRWPMVAEQFGPHLCNTDVFNAQPSQSVEDQAHKRWQDLRKRVIEHNVR  238
             L++ F   +L  +  +   +   L   D               +  +DLR+++ EHN+R
Sbjct  5    DLLRAFYSGDLSEFEEILADYKEELLLDDGL------------AEHLEDLRRKIREHNLR  52

Query  239  VVAKYYTRIQMGRLTELLDLAEEETEKYISELVTSKTIYAKIDRPARLVNF  289
             ++K Y+ I +  L +LL L+ +E EK +++L+    I AKID+   +V F
Sbjct  53   QLSKPYSSISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVF  103


>CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit RPN5 C-terminal 
domain.  This is the C-terminal domain of the 26S proteasome 
regulatory subunit RPN5 proteins.This helical domain 
can be found adjacent to pfam01399. The 26S proteasome is 
the major ATP-dependent protease in eukaryotes. Three subcomplexes 
form this degradation machine: the lid, the base, and 
the core. The helices found at the C terminus of each lid subunit 
form a helical bundle that directs the ordered self-assembly 
of the lid subcomplex. This domain which comprises the 
tail of RPN5 along with the tail of Rpn9, are important for 
Rpn12 binding to the lid.
Length=32

 Score = 63.0 bits (154),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 0/32 (0%)

Query  296  DDVLNEWSSDMKSLLGLLERIDHLITKEEMMA  327
            ++VLNEWS ++ SLL L+E+  HLI KEEM+ 
Sbjct  1    NEVLNEWSHNVNSLLELVEKTTHLINKEEMVH  32



Lambda      K        H        a         alpha
   0.319    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00021652

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  74.9    4e-17
CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit R...  62.6    1e-13


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 74.9 bits (185),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (50%), Gaps = 12/111 (11%)

Query  329  RLVKLFTVPELMRWPMVAEQFGPHLCNTDVFNAQPSQSVEDQAHKRWQDLRKRVIEHNVR  388
             L++ F   +L  +  +   +   L   D               +  +DLR+++ EHN+R
Sbjct  5    DLLRAFYSGDLSEFEEILADYKEELLLDDGL------------AEHLEDLRRKIREHNLR  52

Query  389  VVAKYYTRIQMGRLTELLDLAEEETEKYISELVTSKTIYAKIDRPARLVNF  439
             ++K Y+ I +  L +LL L+ +E EK +++L+    I AKID+   +V F
Sbjct  53   QLSKPYSSISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVF  103


>CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit RPN5 C-terminal 
domain.  This is the C-terminal domain of the 26S proteasome 
regulatory subunit RPN5 proteins.This helical domain 
can be found adjacent to pfam01399. The 26S proteasome is 
the major ATP-dependent protease in eukaryotes. Three subcomplexes 
form this degradation machine: the lid, the base, and 
the core. The helices found at the C terminus of each lid subunit 
form a helical bundle that directs the ordered self-assembly 
of the lid subcomplex. This domain which comprises the 
tail of RPN5 along with the tail of Rpn9, are important for 
Rpn12 binding to the lid.
Length=32

 Score = 62.6 bits (153),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 0/32 (0%)

Query  446  DDVLNEWSSDMKSLLGLLERIDHLITKEEMMA  477
            ++VLNEWS ++ SLL L+E+  HLI KEEM+ 
Sbjct  1    NEVLNEWSHNVNSLLELVEKTTHLINKEEMVH  32



Lambda      K        H        a         alpha
   0.317    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00026683

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  74.9    4e-17
CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit R...  62.6    1e-13


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 74.9 bits (185),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (50%), Gaps = 12/111 (11%)

Query  329  RLVKLFTVPELMRWPMVAEQFGPHLCNTDVFNAQPSQSVEDQAHKRWQDLRKRVIEHNVR  388
             L++ F   +L  +  +   +   L   D               +  +DLR+++ EHN+R
Sbjct  5    DLLRAFYSGDLSEFEEILADYKEELLLDDGL------------AEHLEDLRRKIREHNLR  52

Query  389  VVAKYYTRIQMGRLTELLDLAEEETEKYISELVTSKTIYAKIDRPARLVNF  439
             ++K Y+ I +  L +LL L+ +E EK +++L+    I AKID+   +V F
Sbjct  53   QLSKPYSSISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVF  103


>CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit RPN5 C-terminal 
domain.  This is the C-terminal domain of the 26S proteasome 
regulatory subunit RPN5 proteins.This helical domain 
can be found adjacent to pfam01399. The 26S proteasome is 
the major ATP-dependent protease in eukaryotes. Three subcomplexes 
form this degradation machine: the lid, the base, and 
the core. The helices found at the C terminus of each lid subunit 
form a helical bundle that directs the ordered self-assembly 
of the lid subcomplex. This domain which comprises the 
tail of RPN5 along with the tail of Rpn9, are important for 
Rpn12 binding to the lid.
Length=32

 Score = 62.6 bits (153),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 0/32 (0%)

Query  446  DDVLNEWSSDMKSLLGLLERIDHLITKEEMMA  477
            ++VLNEWS ++ SLL L+E+  HLI KEEM+ 
Sbjct  1    NEVLNEWSHNVNSLLELVEKTTHLINKEEMVH  32



Lambda      K        H        a         alpha
   0.317    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00021653

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  74.9    4e-17
CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit R...  62.6    1e-13


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 74.9 bits (185),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (50%), Gaps = 12/111 (11%)

Query  329  RLVKLFTVPELMRWPMVAEQFGPHLCNTDVFNAQPSQSVEDQAHKRWQDLRKRVIEHNVR  388
             L++ F   +L  +  +   +   L   D               +  +DLR+++ EHN+R
Sbjct  5    DLLRAFYSGDLSEFEEILADYKEELLLDDGL------------AEHLEDLRRKIREHNLR  52

Query  389  VVAKYYTRIQMGRLTELLDLAEEETEKYISELVTSKTIYAKIDRPARLVNF  439
             ++K Y+ I +  L +LL L+ +E EK +++L+    I AKID+   +V F
Sbjct  53   QLSKPYSSISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVF  103


>CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit RPN5 C-terminal 
domain.  This is the C-terminal domain of the 26S proteasome 
regulatory subunit RPN5 proteins.This helical domain 
can be found adjacent to pfam01399. The 26S proteasome is 
the major ATP-dependent protease in eukaryotes. Three subcomplexes 
form this degradation machine: the lid, the base, and 
the core. The helices found at the C terminus of each lid subunit 
form a helical bundle that directs the ordered self-assembly 
of the lid subcomplex. This domain which comprises the 
tail of RPN5 along with the tail of Rpn9, are important for 
Rpn12 binding to the lid.
Length=32

 Score = 62.6 bits (153),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 0/32 (0%)

Query  446  DDVLNEWSSDMKSLLGLLERIDHLITKEEMMA  477
            ++VLNEWS ++ SLL L+E+  HLI KEEM+ 
Sbjct  1    NEVLNEWSHNVNSLLELVEKTTHLINKEEMVH  32



Lambda      K        H        a         alpha
   0.317    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00026684

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  74.9    4e-17
CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit R...  62.6    1e-13


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 74.9 bits (185),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (50%), Gaps = 12/111 (11%)

Query  329  RLVKLFTVPELMRWPMVAEQFGPHLCNTDVFNAQPSQSVEDQAHKRWQDLRKRVIEHNVR  388
             L++ F   +L  +  +   +   L   D               +  +DLR+++ EHN+R
Sbjct  5    DLLRAFYSGDLSEFEEILADYKEELLLDDGL------------AEHLEDLRRKIREHNLR  52

Query  389  VVAKYYTRIQMGRLTELLDLAEEETEKYISELVTSKTIYAKIDRPARLVNF  439
             ++K Y+ I +  L +LL L+ +E EK +++L+    I AKID+   +V F
Sbjct  53   QLSKPYSSISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVF  103


>CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit RPN5 C-terminal 
domain.  This is the C-terminal domain of the 26S proteasome 
regulatory subunit RPN5 proteins.This helical domain 
can be found adjacent to pfam01399. The 26S proteasome is 
the major ATP-dependent protease in eukaryotes. Three subcomplexes 
form this degradation machine: the lid, the base, and 
the core. The helices found at the C terminus of each lid subunit 
form a helical bundle that directs the ordered self-assembly 
of the lid subcomplex. This domain which comprises the 
tail of RPN5 along with the tail of Rpn9, are important for 
Rpn12 binding to the lid.
Length=32

 Score = 62.6 bits (153),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 0/32 (0%)

Query  446  DDVLNEWSSDMKSLLGLLERIDHLITKEEMMA  477
            ++VLNEWS ++ SLL L+E+  HLI KEEM+ 
Sbjct  1    NEVLNEWSHNVNSLLELVEKTTHLINKEEMVH  32



Lambda      K        H        a         alpha
   0.317    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00021654

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  74.9    4e-17
CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit R...  62.6    1e-13


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 74.9 bits (185),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (50%), Gaps = 12/111 (11%)

Query  329  RLVKLFTVPELMRWPMVAEQFGPHLCNTDVFNAQPSQSVEDQAHKRWQDLRKRVIEHNVR  388
             L++ F   +L  +  +   +   L   D               +  +DLR+++ EHN+R
Sbjct  5    DLLRAFYSGDLSEFEEILADYKEELLLDDGL------------AEHLEDLRRKIREHNLR  52

Query  389  VVAKYYTRIQMGRLTELLDLAEEETEKYISELVTSKTIYAKIDRPARLVNF  439
             ++K Y+ I +  L +LL L+ +E EK +++L+    I AKID+   +V F
Sbjct  53   QLSKPYSSISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVF  103


>CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit RPN5 C-terminal 
domain.  This is the C-terminal domain of the 26S proteasome 
regulatory subunit RPN5 proteins.This helical domain 
can be found adjacent to pfam01399. The 26S proteasome is 
the major ATP-dependent protease in eukaryotes. Three subcomplexes 
form this degradation machine: the lid, the base, and 
the core. The helices found at the C terminus of each lid subunit 
form a helical bundle that directs the ordered self-assembly 
of the lid subcomplex. This domain which comprises the 
tail of RPN5 along with the tail of Rpn9, are important for 
Rpn12 binding to the lid.
Length=32

 Score = 62.6 bits (153),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 0/32 (0%)

Query  446  DDVLNEWSSDMKSLLGLLERIDHLITKEEMMA  477
            ++VLNEWS ++ SLL L+E+  HLI KEEM+ 
Sbjct  1    NEVLNEWSHNVNSLLELVEKTTHLINKEEMVH  32



Lambda      K        H        a         alpha
   0.317    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00021655

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  74.9    4e-17
CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit R...  62.6    1e-13


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 74.9 bits (185),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (50%), Gaps = 12/111 (11%)

Query  347  RLVKLFTVPELMRWPMVAEQFGPHLCNTDVFNAQPSQSVEDQAHKRWQDLRKRVIEHNVR  406
             L++ F   +L  +  +   +   L   D               +  +DLR+++ EHN+R
Sbjct  5    DLLRAFYSGDLSEFEEILADYKEELLLDDGL------------AEHLEDLRRKIREHNLR  52

Query  407  VVAKYYTRIQMGRLTELLDLAEEETEKYISELVTSKTIYAKIDRPARLVNF  457
             ++K Y+ I +  L +LL L+ +E EK +++L+    I AKID+   +V F
Sbjct  53   QLSKPYSSISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVF  103


>CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit RPN5 C-terminal 
domain.  This is the C-terminal domain of the 26S proteasome 
regulatory subunit RPN5 proteins.This helical domain 
can be found adjacent to pfam01399. The 26S proteasome is 
the major ATP-dependent protease in eukaryotes. Three subcomplexes 
form this degradation machine: the lid, the base, and 
the core. The helices found at the C terminus of each lid subunit 
form a helical bundle that directs the ordered self-assembly 
of the lid subcomplex. This domain which comprises the 
tail of RPN5 along with the tail of Rpn9, are important for 
Rpn12 binding to the lid.
Length=32

 Score = 62.6 bits (153),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 0/32 (0%)

Query  464  DDVLNEWSSDMKSLLGLLERIDHLITKEEMMA  495
            ++VLNEWS ++ SLL L+E+  HLI KEEM+ 
Sbjct  1    NEVLNEWSHNVNSLLELVEKTTHLINKEEMVH  32



Lambda      K        H        a         alpha
   0.318    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00021656

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  74.9    4e-17
CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit R...  62.6    1e-13


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 74.9 bits (185),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (50%), Gaps = 12/111 (11%)

Query  347  RLVKLFTVPELMRWPMVAEQFGPHLCNTDVFNAQPSQSVEDQAHKRWQDLRKRVIEHNVR  406
             L++ F   +L  +  +   +   L   D               +  +DLR+++ EHN+R
Sbjct  5    DLLRAFYSGDLSEFEEILADYKEELLLDDGL------------AEHLEDLRRKIREHNLR  52

Query  407  VVAKYYTRIQMGRLTELLDLAEEETEKYISELVTSKTIYAKIDRPARLVNF  457
             ++K Y+ I +  L +LL L+ +E EK +++L+    I AKID+   +V F
Sbjct  53   QLSKPYSSISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVF  103


>CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit RPN5 C-terminal 
domain.  This is the C-terminal domain of the 26S proteasome 
regulatory subunit RPN5 proteins.This helical domain 
can be found adjacent to pfam01399. The 26S proteasome is 
the major ATP-dependent protease in eukaryotes. Three subcomplexes 
form this degradation machine: the lid, the base, and 
the core. The helices found at the C terminus of each lid subunit 
form a helical bundle that directs the ordered self-assembly 
of the lid subcomplex. This domain which comprises the 
tail of RPN5 along with the tail of Rpn9, are important for 
Rpn12 binding to the lid.
Length=32

 Score = 62.6 bits (153),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 0/32 (0%)

Query  464  DDVLNEWSSDMKSLLGLLERIDHLITKEEMMA  495
            ++VLNEWS ++ SLL L+E+  HLI KEEM+ 
Sbjct  1    NEVLNEWSHNVNSLLELVEKTTHLINKEEMVH  32



Lambda      K        H        a         alpha
   0.318    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00026685

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  74.6    4e-17
CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit R...  63.0    8e-14


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 74.6 bits (184),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (50%), Gaps = 12/111 (11%)

Query  234  RLVKLFTVPELMRWPMVAEQFGPHLCNTDVFNAQPSQSVEDQAHKRWQDLRKRVIEHNVR  293
             L++ F   +L  +  +   +   L   D               +  +DLR+++ EHN+R
Sbjct  5    DLLRAFYSGDLSEFEEILADYKEELLLDDGL------------AEHLEDLRRKIREHNLR  52

Query  294  VVAKYYTRIQMGRLTELLDLAEEETEKYISELVTSKTIYAKIDRPARLVNF  344
             ++K Y+ I +  L +LL L+ +E EK +++L+    I AKID+   +V F
Sbjct  53   QLSKPYSSISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVF  103


>CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit RPN5 C-terminal 
domain.  This is the C-terminal domain of the 26S proteasome 
regulatory subunit RPN5 proteins.This helical domain 
can be found adjacent to pfam01399. The 26S proteasome is 
the major ATP-dependent protease in eukaryotes. Three subcomplexes 
form this degradation machine: the lid, the base, and 
the core. The helices found at the C terminus of each lid subunit 
form a helical bundle that directs the ordered self-assembly 
of the lid subcomplex. This domain which comprises the 
tail of RPN5 along with the tail of Rpn9, are important for 
Rpn12 binding to the lid.
Length=32

 Score = 63.0 bits (154),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 0/32 (0%)

Query  351  DDVLNEWSSDMKSLLGLLERIDHLITKEEMMA  382
            ++VLNEWS ++ SLL L+E+  HLI KEEM+ 
Sbjct  1    NEVLNEWSHNVNSLLELVEKTTHLINKEEMVH  32



Lambda      K        H        a         alpha
   0.318    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00021657

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  74.6    2e-17
CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit R...  63.0    6e-14


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 74.6 bits (184),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 55/111 (50%), Gaps = 12/111 (11%)

Query  161  RLVKLFTVPELMRWPMVAEQFGPHLCNTDVFNAQPSQSVEDQAHKRWQDLRKRVIEHNVR  220
             L++ F   +L  +  +   +   L   D               +  +DLR+++ EHN+R
Sbjct  5    DLLRAFYSGDLSEFEEILADYKEELLLDDGL------------AEHLEDLRRKIREHNLR  52

Query  221  VVAKYYTRIQMGRLTELLDLAEEETEKYISELVTSKTIYAKIDRPARLVNF  271
             ++K Y+ I +  L +LL L+ +E EK +++L+    I AKID+   +V F
Sbjct  53   QLSKPYSSISLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVF  103


>CDD:436272 pfam18098, RPN5_C, 26S proteasome regulatory subunit RPN5 C-terminal 
domain.  This is the C-terminal domain of the 26S proteasome 
regulatory subunit RPN5 proteins.This helical domain 
can be found adjacent to pfam01399. The 26S proteasome is 
the major ATP-dependent protease in eukaryotes. Three subcomplexes 
form this degradation machine: the lid, the base, and 
the core. The helices found at the C terminus of each lid subunit 
form a helical bundle that directs the ordered self-assembly 
of the lid subcomplex. This domain which comprises the 
tail of RPN5 along with the tail of Rpn9, are important for 
Rpn12 binding to the lid.
Length=32

 Score = 63.0 bits (154),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 0/32 (0%)

Query  278  DDVLNEWSSDMKSLLGLLERIDHLITKEEMMA  309
            ++VLNEWS ++ SLL L+E+  HLI KEEM+ 
Sbjct  1    NEVLNEWSHNVNSLLELVEKTTHLINKEEMVH  32



Lambda      K        H        a         alpha
   0.318    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00026686

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00021658

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.150    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00021659

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00026687

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429767 pfam07978, NIPSNAP, NIPSNAP. Members of this family in...  122     1e-34


>CDD:429767 pfam07978, NIPSNAP, NIPSNAP.  Members of this family include 
many hypothetical proteins. It also includes members of the 
NIPSNAP family which have putative roles in vesicular transport. 
This domain is often found in duplicate.
Length=102

 Score = 122 bits (307),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 63/102 (62%), Gaps = 4/102 (4%)

Query  287  FELRSYTLHPGNLLEWETHWRRGLRARRE--VMEGVGAWFVQIGDLNTVHHLWQFANLEE  344
            +ELR+Y L PG L E+  ++ R + AR+     E +G +  +IG LN V+HLW +A+L E
Sbjct  1    YELRTYRLKPGKLAEFLENFARAIGARQAKHGGELIGYFTSEIGPLNQVYHLWAYASLAE  60

Query  345  RKIRREQSWGIEGWAETVHKTVPL--IQSMQSRILIPMPWSP  384
            R+ RR       GW   V +TVPL  I+ M+SRIL P P+SP
Sbjct  61   REARRAALAADPGWEANVEETVPLGFIRRMESRILRPTPFSP  102



Lambda      K        H        a         alpha
   0.317    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00026688

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00021660

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00026689

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00026690

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00021662

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  89.6    3e-22


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 89.6 bits (223),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 38/103 (37%), Positives = 63/103 (61%), Gaps = 1/103 (1%)

Query  315  AMTDLVDAFQRDDIHAYEAVLSKNP-DVLADPFIAENIDEVSRNMRTKAVLKFIAPYTRF  373
            A  DL+ AF   D+  +E +L+    ++L D  +AE+++++ R +R   + +   PY+  
Sbjct  2    AYRDLLRAFYSGDLSEFEEILADYKEELLLDDGLAEHLEDLRRKIREHNLRQLSKPYSSI  61

Query  374  SLSFISKHIKISVPEVQDILSYLILDKKLNAKIDQENGTVVVE  416
            SLS ++K + +SV EV+ IL+ LI D ++ AKIDQ NG VV  
Sbjct  62   SLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVFS  104



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00021663

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  89.6    3e-22


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 89.6 bits (223),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 38/103 (37%), Positives = 63/103 (61%), Gaps = 1/103 (1%)

Query  315  AMTDLVDAFQRDDIHAYEAVLSKNP-DVLADPFIAENIDEVSRNMRTKAVLKFIAPYTRF  373
            A  DL+ AF   D+  +E +L+    ++L D  +AE+++++ R +R   + +   PY+  
Sbjct  2    AYRDLLRAFYSGDLSEFEEILADYKEELLLDDGLAEHLEDLRRKIREHNLRQLSKPYSSI  61

Query  374  SLSFISKHIKISVPEVQDILSYLILDKKLNAKIDQENGTVVVE  416
            SLS ++K + +SV EV+ IL+ LI D ++ AKIDQ NG VV  
Sbjct  62   SLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVFS  104



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00021666

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00021664

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  89.6    1e-22


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 89.6 bits (223),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 38/103 (37%), Positives = 63/103 (61%), Gaps = 1/103 (1%)

Query  200  AMTDLVDAFQRDDIHAYEAVLSKNP-DVLADPFIAENIDEVSRNMRTKAVLKFIAPYTRF  258
            A  DL+ AF   D+  +E +L+    ++L D  +AE+++++ R +R   + +   PY+  
Sbjct  2    AYRDLLRAFYSGDLSEFEEILADYKEELLLDDGLAEHLEDLRRKIREHNLRQLSKPYSSI  61

Query  259  SLSFISKHIKISVPEVQDILSYLILDKKLNAKIDQENGTVVVE  301
            SLS ++K + +SV EV+ IL+ LI D ++ AKIDQ NG VV  
Sbjct  62   SLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVFS  104



Lambda      K        H        a         alpha
   0.318    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00021665

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  89.6    3e-22


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 89.6 bits (223),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 38/103 (37%), Positives = 63/103 (61%), Gaps = 1/103 (1%)

Query  315  AMTDLVDAFQRDDIHAYEAVLSKNP-DVLADPFIAENIDEVSRNMRTKAVLKFIAPYTRF  373
            A  DL+ AF   D+  +E +L+    ++L D  +AE+++++ R +R   + +   PY+  
Sbjct  2    AYRDLLRAFYSGDLSEFEEILADYKEELLLDDGLAEHLEDLRRKIREHNLRQLSKPYSSI  61

Query  374  SLSFISKHIKISVPEVQDILSYLILDKKLNAKIDQENGTVVVE  416
            SLS ++K + +SV EV+ IL+ LI D ++ AKIDQ NG VV  
Sbjct  62   SLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVFS  104



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00026692

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         371     2e-124


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 371 bits (955),  Expect = 2e-124, Method: Composition-based stats.
 Identities = 179/505 (35%), Positives = 264/505 (52%), Gaps = 63/505 (12%)

Query  26   VASFSTLGGLLFGYDQGVISGVITMESFGARFPHI------YTDSSFKGWFVSTLLLAAW  79
            VA  + LGG LFGYD GVI   +T+  F   F            S   G  VS   +  +
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  80   FGSLINGPIADRLGRKLSINLAVVVFVIGSAIQCGAV---TIPMLFAGRAIAGLAVGQLT  136
             GSL  G + DR GRK S+ +A V+FVIG+ +Q  A    ++  L  GR + G+ VG  +
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  137  MVVPLYISEVSVAEIRGSLVVIQQLSITIGILVSYWINYGTNYIGGSRCAPDAPFSNGSK  196
            ++ P+YISE++  ++RG+L  + QL+IT GIL++Y    G N    S             
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNS-------------  167

Query  197  FDPYRDVPSGGCDGQSDASWRLPLALQILPAMILGLGMLFFPETPRWLMMKERYDDALRS  256
                               WR+PL LQ++PA++L +G+LF PE+PRWL+ K R ++A   
Sbjct  168  -----------------DGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREV  210

Query  257  LSKLRRKARDCPELVNEYLEIKASILLENTFAREHFPNMSGLRLHAAQYLSFLTTWARFK  316
            L+KLR       EL      ++A    E    +E                   +T  R +
Sbjct  211  LAKLRGVPDVDRELDEIKDSLEAGQEAEKASWKE-----------------LFSTKTRRQ  253

Query  317  RLAIGCAVMFFQQFMGCNAMIYYAPTIFGQLGLDGNTTSLLATGVYGIVNCLSTLPALFL  376
            RL IG  +  FQQ  G NA+ YY+ TIF  LGL   + S L T + G+VN + T  A+FL
Sbjct  254  RLLIGVMLQIFQQLTGINAIFYYSTTIFENLGL---SDSFLVTIIVGVVNFVFTFIAIFL  310

Query  377  IDKVGRRPLLMFGATGTCISLAIVGGIIGAYGSDLVNHKSAGWAGIAFIYIYDINFSYSF  436
            +D+ GRRPLL+ GA G  I   I+G +       +     AG   I FI ++   F+  +
Sbjct  311  VDRFGRRPLLLLGAAGMAICFVILGIVALLG---VSKSDWAGIVAIVFIALFIAFFAMGW  367

Query  437  APIGWVLPSEIFNLSIRSKAISITTSATWMCNFIIGLVTPDMLNTIT-YGTYIFFAAFCL  495
             P+ WV+ SE+F LS+RSKA+++ T+A W+ NF+IG + P + + I    T+  FA   +
Sbjct  368  GPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLV  427

Query  496  LALAFTFFCIPETRGKTLEDMDLIF  520
            L + F FF +PET+G+TLE++D +F
Sbjct  428  LFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.326    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00021667

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460195 pfam01399, PCI, PCI domain. This domain has also been ...  89.6    3e-22


>CDD:460195 pfam01399, PCI, PCI domain.  This domain has also been called 
the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length=105

 Score = 89.6 bits (223),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 38/103 (37%), Positives = 63/103 (61%), Gaps = 1/103 (1%)

Query  315  AMTDLVDAFQRDDIHAYEAVLSKNP-DVLADPFIAENIDEVSRNMRTKAVLKFIAPYTRF  373
            A  DL+ AF   D+  +E +L+    ++L D  +AE+++++ R +R   + +   PY+  
Sbjct  2    AYRDLLRAFYSGDLSEFEEILADYKEELLLDDGLAEHLEDLRRKIREHNLRQLSKPYSSI  61

Query  374  SLSFISKHIKISVPEVQDILSYLILDKKLNAKIDQENGTVVVE  416
            SLS ++K + +SV EV+ IL+ LI D ++ AKIDQ NG VV  
Sbjct  62   SLSDLAKLLGLSVDEVEKILAKLIRDGRIRAKIDQVNGIVVFS  104



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00026694

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         180     6e-55


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 180 bits (459),  Expect = 6e-55, Method: Composition-based stats.
 Identities = 80/197 (41%), Positives = 119/197 (60%), Gaps = 7/197 (4%)

Query  1    MFFQQFMGCNAMIYYAPTIFGQLGLDGNTTSLLATGVYGIVNCLSTLPALFLIDKVGRRP  60
              FQQ  G NA+ YY+ TIF  LGL   + S L T + G+VN + T  A+FL+D+ GRRP
Sbjct  262  QIFQQLTGINAIFYYSTTIFENLGL---SDSFLVTIIVGVVNFVFTFIAIFLVDRFGRRP  318

Query  61   LLMFGATGTCISLAIVGGIIGAYGSDLVNHKSAGWAGIAFIYIYDINFSYSFAPIGWVLP  120
            LL+ GA G  I   I+G +       +     AG   I FI ++   F+  + P+ WV+ 
Sbjct  319  LLLLGAAGMAICFVILGIVALLG---VSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIV  375

Query  121  SEIFNLSIRSKAISITTSATWMCNFIIGLVTPDMLNTIT-YGTYIFFAAFCLLALAFTFF  179
            SE+F LS+RSKA+++ T+A W+ NF+IG + P + + I    T+  FA   +L + F FF
Sbjct  376  SELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFF  435

Query  180  CIPETRGKTLEDMDLIF  196
             +PET+G+TLE++D +F
Sbjct  436  FVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.326    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00026693

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         348     8e-116


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 348 bits (894),  Expect = 8e-116, Method: Composition-based stats.
 Identities = 174/496 (35%), Positives = 256/496 (52%), Gaps = 63/496 (13%)

Query  26   VASFSTLGGLLFGYDQGVISGVITMESFGARFPHI------YTDSSFKGWFVSTLLLAAW  79
            VA  + LGG LFGYD GVI   +T+  F   F            S   G  VS   +  +
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  80   FGSLINGPIADRLGRKLSINLAVVVFVIGSAIQCGAV---TIPMLFAGRAIAGLAVGQLT  136
             GSL  G + DR GRK S+ +A V+FVIG+ +Q  A    ++  L  GR + G+ VG  +
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  137  MVVPLYISEVSVAEIRGSLVVIQQLSITIGILVSYWINYGTNYIGGSRCAPDAPFSNGSK  196
            ++ P+YISE++  ++RG+L  + QL+IT GIL++Y    G N    S             
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNS-------------  167

Query  197  FDPYRDVPSGGCDGQSDASWRLPLALQILPAMILGLGMLFFPETPRWLMMKERYDDALRS  256
                               WR+PL LQ++PA++L +G+LF PE+PRWL+ K R ++A   
Sbjct  168  -----------------DGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREV  210

Query  257  LSKLRRKARDCPELVNEYLEIKASILLENTFAREHFPNMSGLRLHAAQYLSFLTTWARFK  316
            L+KLR       EL      ++A    E    +E                   +T  R +
Sbjct  211  LAKLRGVPDVDRELDEIKDSLEAGQEAEKASWKE-----------------LFSTKTRRQ  253

Query  317  RLAIGCAVMFFQQFMGCNAMIYYAPTIFGQLGLDGNTTSLLATGVYGIVNCLSTLPALFL  376
            RL IG  +  FQQ  G NA+ YY+ TIF  LGL   + S L T + G+VN + T  A+FL
Sbjct  254  RLLIGVMLQIFQQLTGINAIFYYSTTIFENLGL---SDSFLVTIIVGVVNFVFTFIAIFL  310

Query  377  IDKVGRRPLLMFGATGTCISLAIVGGIIGAYGSDLVNHKSAGWAGIAFIYIYDINFSYSF  436
            +D+ GRRPLL+ GA G  I   I+G +       +     AG   I FI ++   F+  +
Sbjct  311  VDRFGRRPLLLLGAAGMAICFVILGIVALLG---VSKSDWAGIVAIVFIALFIAFFAMGW  367

Query  437  APIGWVLPSEIFNLSIRSKAISITTSATWMCNFIIGLVTPDMLNTIT-YGTYIFFAAFCL  495
             P+ WV+ SE+F LS+RSKA+++ T+A W+ NF+IG + P + + I    T+  FA   +
Sbjct  368  GPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLV  427

Query  496  LALAFTFFCIPETRGK  511
            L + F FF +PET+G+
Sbjct  428  LFIIFVFFFVPETKGR  443



Lambda      K        H        a         alpha
   0.328    0.143    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00026695

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain. This ...  212     1e-66


>CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain.  This family 
of proteins conserved from plants to humans is a highly specific 
ubiquitin iso-peptidase that removes ubiquitin from proteins. 
The modification of cellular proteins by ubiquitin (Ub) 
is an important event that underlies protein stability and 
function in eukaryote being a dynamic and reversible process. 
Otubain carries several key conserved domains: (i) the 
OTU (ovarian tumor domain) in which there is an active cysteine 
protease triad (ii) a nuclear localization signal, (iii) 
a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac 
(where phi indicates an aromatic amino acid, x indicates any 
amino acid and Ac indicates an acidic amino acid), (iv) a 
Ub-associated (UBA)-like domain and (v) the LxxLL motif.
Length=240

 Score = 212 bits (542),  Expect = 1e-66, Method: Composition-based stats.
 Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 15/245 (6%)

Query  79   QGPLVSMKQSSNVIALEYANADPTYVTKTNALAVTHPFTRVMKGDGNCGWRAVAFGYFES  138
            QGPLVS K   + +  EYA ADP Y+ K   L+  +   R  +GDGNC +RA  F Y E 
Sbjct  5    QGPLVSEKGPLSALEKEYAKADPIYLQKIQDLSEKYSGIRRTRGDGNCFYRAFGFSYLEL  64

Query  139  LFNLRDTLQVHRELLRIKSLSSLLDQVGQQEHLYEIFVEATEQVFTQVSEAIQNGVHDES  198
            L  L    ++ R   R++SL   L  +G  E  +E F +A  ++  +V + +     +  
Sbjct  65   L--LESKDEIDRFKARVESLKEALVALGFDEDTFEDFCDAFLELLKKVEDGVSTSESE--  120

Query  199  FLVEAFNIDYNSSAVITHFRLLTSAWMKLNPHRYQAFLSLPLD--QYCATRIETVKTEID  256
             L++AFN    S  ++   RLLTSA++K +   Y+ F+       ++C   +E +  E D
Sbjct  121  -LLQAFNDQETSDYIVYFLRLLTSAYLKTHADEYEPFIDGGGTVEEFCQQEVEPMNKEAD  179

Query  257  EVGLQALVDGVIEGSGFGVEILYLDRSA-GDAVTPHLLTPSRPSSAT---IRLLYRPGHY  312
             + + AL + +    G  V + YLDRSA G+ V  H       +      I LLYRPGHY
Sbjct  180  HLQIIALAEAL----GVPVRVEYLDRSAEGNTVNHHDFPGEDDTEEQAPFITLLYRPGHY  235

Query  313  DILYR  317
            DILY+
Sbjct  236  DILYK  240



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00021668

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain. This ...  212     1e-66


>CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain.  This family 
of proteins conserved from plants to humans is a highly specific 
ubiquitin iso-peptidase that removes ubiquitin from proteins. 
The modification of cellular proteins by ubiquitin (Ub) 
is an important event that underlies protein stability and 
function in eukaryote being a dynamic and reversible process. 
Otubain carries several key conserved domains: (i) the 
OTU (ovarian tumor domain) in which there is an active cysteine 
protease triad (ii) a nuclear localization signal, (iii) 
a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac 
(where phi indicates an aromatic amino acid, x indicates any 
amino acid and Ac indicates an acidic amino acid), (iv) a 
Ub-associated (UBA)-like domain and (v) the LxxLL motif.
Length=240

 Score = 212 bits (542),  Expect = 1e-66, Method: Composition-based stats.
 Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 15/245 (6%)

Query  79   QGPLVSMKQSSNVIALEYANADPTYVTKTNALAVTHPFTRVMKGDGNCGWRAVAFGYFES  138
            QGPLVS K   + +  EYA ADP Y+ K   L+  +   R  +GDGNC +RA  F Y E 
Sbjct  5    QGPLVSEKGPLSALEKEYAKADPIYLQKIQDLSEKYSGIRRTRGDGNCFYRAFGFSYLEL  64

Query  139  LFNLRDTLQVHRELLRIKSLSSLLDQVGQQEHLYEIFVEATEQVFTQVSEAIQNGVHDES  198
            L  L    ++ R   R++SL   L  +G  E  +E F +A  ++  +V + +     +  
Sbjct  65   L--LESKDEIDRFKARVESLKEALVALGFDEDTFEDFCDAFLELLKKVEDGVSTSESE--  120

Query  199  FLVEAFNIDYNSSAVITHFRLLTSAWMKLNPHRYQAFLSLPLD--QYCATRIETVKTEID  256
             L++AFN    S  ++   RLLTSA++K +   Y+ F+       ++C   +E +  E D
Sbjct  121  -LLQAFNDQETSDYIVYFLRLLTSAYLKTHADEYEPFIDGGGTVEEFCQQEVEPMNKEAD  179

Query  257  EVGLQALVDGVIEGSGFGVEILYLDRSA-GDAVTPHLLTPSRPSSAT---IRLLYRPGHY  312
             + + AL + +    G  V + YLDRSA G+ V  H       +      I LLYRPGHY
Sbjct  180  HLQIIALAEAL----GVPVRVEYLDRSAEGNTVNHHDFPGEDDTEEQAPFITLLYRPGHY  235

Query  313  DILYR  317
            DILY+
Sbjct  236  DILYK  240



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00021669

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.145    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00026696

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain. This ...  209     4e-67


>CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain.  This family 
of proteins conserved from plants to humans is a highly specific 
ubiquitin iso-peptidase that removes ubiquitin from proteins. 
The modification of cellular proteins by ubiquitin (Ub) 
is an important event that underlies protein stability and 
function in eukaryote being a dynamic and reversible process. 
Otubain carries several key conserved domains: (i) the 
OTU (ovarian tumor domain) in which there is an active cysteine 
protease triad (ii) a nuclear localization signal, (iii) 
a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac 
(where phi indicates an aromatic amino acid, x indicates any 
amino acid and Ac indicates an acidic amino acid), (iv) a 
Ub-associated (UBA)-like domain and (v) the LxxLL motif.
Length=240

 Score = 209 bits (533),  Expect = 4e-67, Method: Composition-based stats.
 Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 15/245 (6%)

Query  79   QGPLVSMKQSSNVIALEYANADPTYVTKTNALAVTHPFTRVMKGDGNCGWRAVAFGYFES  138
            QGPLVS K   + +  EYA ADP Y+ K   L+  +   R  +GDGNC +RA  F Y E 
Sbjct  5    QGPLVSEKGPLSALEKEYAKADPIYLQKIQDLSEKYSGIRRTRGDGNCFYRAFGFSYLEL  64

Query  139  LFNLRDTLQVHRELLRIKSLSSLLDQVGQQEHLYEIFVEATEQVFTQVSEAIQNGVHDES  198
            L  L    ++ R   R++SL   L  +G  E  +E F +A  ++  +V + +     +  
Sbjct  65   L--LESKDEIDRFKARVESLKEALVALGFDEDTFEDFCDAFLELLKKVEDGVSTSESE--  120

Query  199  FLVEAFNIDYNSSAVITHFRLLTSAWMKLNPHRYQAFLSLPLD--QYCATRIETVKTEID  256
             L++AFN    S  ++   RLLTSA++K +   Y+ F+       ++C   +E +  E D
Sbjct  121  -LLQAFNDQETSDYIVYFLRLLTSAYLKTHADEYEPFIDGGGTVEEFCQQEVEPMNKEAD  179

Query  257  EVGLQALVDGVIEGSGFGVEILYLDRSA-GDAVTPHLLTPSRPSSAT---IRLLYRPGHY  312
             + + AL + +    G  V + YLDRSA G+ V  H       +      I LLYRPGHY
Sbjct  180  HLQIIALAEAL----GVPVRVEYLDRSAEGNTVNHHDFPGEDDTEEQAPFITLLYRPGHY  235

Query  313  DILYR  317
            DILY+
Sbjct  236  DILYK  240



Lambda      K        H        a         alpha
   0.319    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00026697

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         365     2e-122


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 365 bits (939),  Expect = 2e-122, Method: Composition-based stats.
 Identities = 179/505 (35%), Positives = 264/505 (52%), Gaps = 63/505 (12%)

Query  26   VASFSTLGGLLFGYDQGVISGVITMESFGARFPHI------YTDSSFKGWFVSTLLLAAW  79
            VA  + LGG LFGYD GVI   +T+  F   F            S   G  VS   +  +
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  80   FGSLINGPIADRLGRKLSINLAVVVFVIGSAIQCGAV---TIPMLFAGRAIAGLAVGQLT  136
             GSL  G + DR GRK S+ +A V+FVIG+ +Q  A    ++  L  GR + G+ VG  +
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  137  MVVPLYISEVSVAEIRGSLVVIQQLSITIGILVSYWINYGTNYIGGSRCAPDAPFSNGSK  196
            ++ P+YISE++  ++RG+L  + QL+IT GIL++Y    G N    S             
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNS-------------  167

Query  197  FDPYRDVPSGGCDGQSDASWRLPLALQILPAMILGLGMLFFPETPRWLMMKERYDDALRS  256
                               WR+PL LQ++PA++L +G+LF PE+PRWL+ K R ++A   
Sbjct  168  -----------------DGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREV  210

Query  257  LSKLRRKARDCPELVNEYLEIKASILLENTFAREHFPNMSGLRLHAAQYLSFLTTWARFK  316
            L+KLR       EL      ++A    E    +E                   +T  R +
Sbjct  211  LAKLRGVPDVDRELDEIKDSLEAGQEAEKASWKE-----------------LFSTKTRRQ  253

Query  317  RLAIGCAVMFFQQFMGCNAMIYYAPTIFGQLGLDGNTTSLLATGVYGIVNCLSTLPALFL  376
            RL IG  +  FQQ  G NA+ YY+ TIF  LGL   + S L T + G+VN + T  A+FL
Sbjct  254  RLLIGVMLQIFQQLTGINAIFYYSTTIFENLGL---SDSFLVTIIVGVVNFVFTFIAIFL  310

Query  377  IDKVGRRPLLMFGATGTCISLAIVGGIIGAYGSDLVNHKSAGWAGIAFIYIYDINFSYSF  436
            +D+ GRRPLL+ GA G  I   I+G +       +     AG   I FI ++   F+  +
Sbjct  311  VDRFGRRPLLLLGAAGMAICFVILGIVALLG---VSKSDWAGIVAIVFIALFIAFFAMGW  367

Query  437  APIGWVLPSEIFNLSIRSKAISITTSATWMCNFIIGLVTPDMLNTIT-YGTYIFFAAFCL  495
             P+ WV+ SE+F LS+RSKA+++ T+A W+ NF+IG + P + + I    T+  FA   +
Sbjct  368  GPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLV  427

Query  496  LALAFTFFCIPETRGKTLEDMDLIF  520
            L + F FF +PET+G+TLE++D +F
Sbjct  428  LFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.326    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684357832


Query= TCONS_00021671

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain. This ...  212     5e-67


>CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain.  This family 
of proteins conserved from plants to humans is a highly specific 
ubiquitin iso-peptidase that removes ubiquitin from proteins. 
The modification of cellular proteins by ubiquitin (Ub) 
is an important event that underlies protein stability and 
function in eukaryote being a dynamic and reversible process. 
Otubain carries several key conserved domains: (i) the 
OTU (ovarian tumor domain) in which there is an active cysteine 
protease triad (ii) a nuclear localization signal, (iii) 
a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac 
(where phi indicates an aromatic amino acid, x indicates any 
amino acid and Ac indicates an acidic amino acid), (iv) a 
Ub-associated (UBA)-like domain and (v) the LxxLL motif.
Length=240

 Score = 212 bits (543),  Expect = 5e-67, Method: Composition-based stats.
 Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 15/245 (6%)

Query  79   QGPLVSMKQSSNVIALEYANADPTYVTKTNALAVTHPFTRVMKGDGNCGWRAVAFGYFES  138
            QGPLVS K   + +  EYA ADP Y+ K   L+  +   R  +GDGNC +RA  F Y E 
Sbjct  5    QGPLVSEKGPLSALEKEYAKADPIYLQKIQDLSEKYSGIRRTRGDGNCFYRAFGFSYLEL  64

Query  139  LFNLRDTLQVHRELLRIKSLSSLLDQVGQQEHLYEIFVEATEQVFTQVSEAIQNGVHDES  198
            L  L    ++ R   R++SL   L  +G  E  +E F +A  ++  +V + +     +  
Sbjct  65   L--LESKDEIDRFKARVESLKEALVALGFDEDTFEDFCDAFLELLKKVEDGVSTSESE--  120

Query  199  FLVEAFNIDYNSSAVITHFRLLTSAWMKLNPHRYQAFLSLPLD--QYCATRIETVKTEID  256
             L++AFN    S  ++   RLLTSA++K +   Y+ F+       ++C   +E +  E D
Sbjct  121  -LLQAFNDQETSDYIVYFLRLLTSAYLKTHADEYEPFIDGGGTVEEFCQQEVEPMNKEAD  179

Query  257  EVGLQALVDGVIEGSGFGVEILYLDRSA-GDAVTPHLLTPSRPSSAT---IRLLYRPGHY  312
             + + AL + +    G  V + YLDRSA G+ V  H       +      I LLYRPGHY
Sbjct  180  HLQIIALAEAL----GVPVRVEYLDRSAEGNTVNHHDFPGEDDTEEQAPFITLLYRPGHY  235

Query  313  DILYR  317
            DILY+
Sbjct  236  DILYK  240



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00021673

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.145    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00026698

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         371     2e-124


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 371 bits (955),  Expect = 2e-124, Method: Composition-based stats.
 Identities = 179/505 (35%), Positives = 264/505 (52%), Gaps = 63/505 (12%)

Query  26   VASFSTLGGLLFGYDQGVISGVITMESFGARFPHI------YTDSSFKGWFVSTLLLAAW  79
            VA  + LGG LFGYD GVI   +T+  F   F            S   G  VS   +  +
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  80   FGSLINGPIADRLGRKLSINLAVVVFVIGSAIQCGAV---TIPMLFAGRAIAGLAVGQLT  136
             GSL  G + DR GRK S+ +A V+FVIG+ +Q  A    ++  L  GR + G+ VG  +
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  137  MVVPLYISEVSVAEIRGSLVVIQQLSITIGILVSYWINYGTNYIGGSRCAPDAPFSNGSK  196
            ++ P+YISE++  ++RG+L  + QL+IT GIL++Y    G N    S             
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNS-------------  167

Query  197  FDPYRDVPSGGCDGQSDASWRLPLALQILPAMILGLGMLFFPETPRWLMMKERYDDALRS  256
                               WR+PL LQ++PA++L +G+LF PE+PRWL+ K R ++A   
Sbjct  168  -----------------DGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREV  210

Query  257  LSKLRRKARDCPELVNEYLEIKASILLENTFAREHFPNMSGLRLHAAQYLSFLTTWARFK  316
            L+KLR       EL      ++A    E    +E                   +T  R +
Sbjct  211  LAKLRGVPDVDRELDEIKDSLEAGQEAEKASWKE-----------------LFSTKTRRQ  253

Query  317  RLAIGCAVMFFQQFMGCNAMIYYAPTIFGQLGLDGNTTSLLATGVYGIVNCLSTLPALFL  376
            RL IG  +  FQQ  G NA+ YY+ TIF  LGL   + S L T + G+VN + T  A+FL
Sbjct  254  RLLIGVMLQIFQQLTGINAIFYYSTTIFENLGL---SDSFLVTIIVGVVNFVFTFIAIFL  310

Query  377  IDKVGRRPLLMFGATGTCISLAIVGGIIGAYGSDLVNHKSAGWAGIAFIYIYDINFSYSF  436
            +D+ GRRPLL+ GA G  I   I+G +       +     AG   I FI ++   F+  +
Sbjct  311  VDRFGRRPLLLLGAAGMAICFVILGIVALLG---VSKSDWAGIVAIVFIALFIAFFAMGW  367

Query  437  APIGWVLPSEIFNLSIRSKAISITTSATWMCNFIIGLVTPDMLNTIT-YGTYIFFAAFCL  495
             P+ WV+ SE+F LS+RSKA+++ T+A W+ NF+IG + P + + I    T+  FA   +
Sbjct  368  GPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLV  427

Query  496  LALAFTFFCIPETRGKTLEDMDLIF  520
            L + F FF +PET+G+TLE++D +F
Sbjct  428  LFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.326    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00026699

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain. This ...  209     4e-67


>CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain.  This family 
of proteins conserved from plants to humans is a highly specific 
ubiquitin iso-peptidase that removes ubiquitin from proteins. 
The modification of cellular proteins by ubiquitin (Ub) 
is an important event that underlies protein stability and 
function in eukaryote being a dynamic and reversible process. 
Otubain carries several key conserved domains: (i) the 
OTU (ovarian tumor domain) in which there is an active cysteine 
protease triad (ii) a nuclear localization signal, (iii) 
a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac 
(where phi indicates an aromatic amino acid, x indicates any 
amino acid and Ac indicates an acidic amino acid), (iv) a 
Ub-associated (UBA)-like domain and (v) the LxxLL motif.
Length=240

 Score = 209 bits (533),  Expect = 4e-67, Method: Composition-based stats.
 Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 15/245 (6%)

Query  79   QGPLVSMKQSSNVIALEYANADPTYVTKTNALAVTHPFTRVMKGDGNCGWRAVAFGYFES  138
            QGPLVS K   + +  EYA ADP Y+ K   L+  +   R  +GDGNC +RA  F Y E 
Sbjct  5    QGPLVSEKGPLSALEKEYAKADPIYLQKIQDLSEKYSGIRRTRGDGNCFYRAFGFSYLEL  64

Query  139  LFNLRDTLQVHRELLRIKSLSSLLDQVGQQEHLYEIFVEATEQVFTQVSEAIQNGVHDES  198
            L  L    ++ R   R++SL   L  +G  E  +E F +A  ++  +V + +     +  
Sbjct  65   L--LESKDEIDRFKARVESLKEALVALGFDEDTFEDFCDAFLELLKKVEDGVSTSESE--  120

Query  199  FLVEAFNIDYNSSAVITHFRLLTSAWMKLNPHRYQAFLSLPLD--QYCATRIETVKTEID  256
             L++AFN    S  ++   RLLTSA++K +   Y+ F+       ++C   +E +  E D
Sbjct  121  -LLQAFNDQETSDYIVYFLRLLTSAYLKTHADEYEPFIDGGGTVEEFCQQEVEPMNKEAD  179

Query  257  EVGLQALVDGVIEGSGFGVEILYLDRSA-GDAVTPHLLTPSRPSSAT---IRLLYRPGHY  312
             + + AL + +    G  V + YLDRSA G+ V  H       +      I LLYRPGHY
Sbjct  180  HLQIIALAEAL----GVPVRVEYLDRSAEGNTVNHHDFPGEDDTEEQAPFITLLYRPGHY  235

Query  313  DILYR  317
            DILY+
Sbjct  236  DILYK  240



Lambda      K        H        a         alpha
   0.319    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00026700

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain. This ...  212     1e-66


>CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain.  This family 
of proteins conserved from plants to humans is a highly specific 
ubiquitin iso-peptidase that removes ubiquitin from proteins. 
The modification of cellular proteins by ubiquitin (Ub) 
is an important event that underlies protein stability and 
function in eukaryote being a dynamic and reversible process. 
Otubain carries several key conserved domains: (i) the 
OTU (ovarian tumor domain) in which there is an active cysteine 
protease triad (ii) a nuclear localization signal, (iii) 
a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac 
(where phi indicates an aromatic amino acid, x indicates any 
amino acid and Ac indicates an acidic amino acid), (iv) a 
Ub-associated (UBA)-like domain and (v) the LxxLL motif.
Length=240

 Score = 212 bits (542),  Expect = 1e-66, Method: Composition-based stats.
 Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 15/245 (6%)

Query  79   QGPLVSMKQSSNVIALEYANADPTYVTKTNALAVTHPFTRVMKGDGNCGWRAVAFGYFES  138
            QGPLVS K   + +  EYA ADP Y+ K   L+  +   R  +GDGNC +RA  F Y E 
Sbjct  5    QGPLVSEKGPLSALEKEYAKADPIYLQKIQDLSEKYSGIRRTRGDGNCFYRAFGFSYLEL  64

Query  139  LFNLRDTLQVHRELLRIKSLSSLLDQVGQQEHLYEIFVEATEQVFTQVSEAIQNGVHDES  198
            L  L    ++ R   R++SL   L  +G  E  +E F +A  ++  +V + +     +  
Sbjct  65   L--LESKDEIDRFKARVESLKEALVALGFDEDTFEDFCDAFLELLKKVEDGVSTSESE--  120

Query  199  FLVEAFNIDYNSSAVITHFRLLTSAWMKLNPHRYQAFLSLPLD--QYCATRIETVKTEID  256
             L++AFN    S  ++   RLLTSA++K +   Y+ F+       ++C   +E +  E D
Sbjct  121  -LLQAFNDQETSDYIVYFLRLLTSAYLKTHADEYEPFIDGGGTVEEFCQQEVEPMNKEAD  179

Query  257  EVGLQALVDGVIEGSGFGVEILYLDRSA-GDAVTPHLLTPSRPSSAT---IRLLYRPGHY  312
             + + AL + +    G  V + YLDRSA G+ V  H       +      I LLYRPGHY
Sbjct  180  HLQIIALAEAL----GVPVRVEYLDRSAEGNTVNHHDFPGEDDTEEQAPFITLLYRPGHY  235

Query  313  DILYR  317
            DILY+
Sbjct  236  DILYK  240



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00026701

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain. This ...  202     6e-63


>CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain.  This family 
of proteins conserved from plants to humans is a highly specific 
ubiquitin iso-peptidase that removes ubiquitin from proteins. 
The modification of cellular proteins by ubiquitin (Ub) 
is an important event that underlies protein stability and 
function in eukaryote being a dynamic and reversible process. 
Otubain carries several key conserved domains: (i) the 
OTU (ovarian tumor domain) in which there is an active cysteine 
protease triad (ii) a nuclear localization signal, (iii) 
a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac 
(where phi indicates an aromatic amino acid, x indicates any 
amino acid and Ac indicates an acidic amino acid), (iv) a 
Ub-associated (UBA)-like domain and (v) the LxxLL motif.
Length=240

 Score = 202 bits (517),  Expect = 6e-63, Method: Composition-based stats.
 Identities = 83/245 (34%), Positives = 124/245 (51%), Gaps = 15/245 (6%)

Query  79   QGPLVSMKQSSNVIALEYANADPTYVTKTNALAVTHPFTRVMKGDGNCGWRGELSSYFES  138
            QGPLVS K   + +  EYA ADP Y+ K   L+  +   R  +GDGNC +R    SY E 
Sbjct  5    QGPLVSEKGPLSALEKEYAKADPIYLQKIQDLSEKYSGIRRTRGDGNCFYRAFGFSYLEL  64

Query  139  LFNLRDTLQVHRELLRIKSLSSLLDQVGQQEHLYEIFVEATEQVFTQVSEAIQNGVHDES  198
            L  L    ++ R   R++SL   L  +G  E  +E F +A  ++  +V + +     +  
Sbjct  65   L--LESKDEIDRFKARVESLKEALVALGFDEDTFEDFCDAFLELLKKVEDGVSTSESE--  120

Query  199  FLVEAFNIDYNSSAVITHFRLLTSAWMKLNPHRYQAFLSLPLD--QYCATRIETVKTEID  256
             L++AFN    S  ++   RLLTSA++K +   Y+ F+       ++C   +E +  E D
Sbjct  121  -LLQAFNDQETSDYIVYFLRLLTSAYLKTHADEYEPFIDGGGTVEEFCQQEVEPMNKEAD  179

Query  257  EVGLQALVDGVIEGSGFGVEILYLDRSA-GDAVTPHLLTPSRPSSAT---IRLLYRPGHY  312
             + + AL + +    G  V + YLDRSA G+ V  H       +      I LLYRPGHY
Sbjct  180  HLQIIALAEAL----GVPVRVEYLDRSAEGNTVNHHDFPGEDDTEEQAPFITLLYRPGHY  235

Query  313  DILYR  317
            DILY+
Sbjct  236  DILYK  240



Lambda      K        H        a         alpha
   0.316    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00021674

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain. This ...  212     1e-66


>CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain.  This family 
of proteins conserved from plants to humans is a highly specific 
ubiquitin iso-peptidase that removes ubiquitin from proteins. 
The modification of cellular proteins by ubiquitin (Ub) 
is an important event that underlies protein stability and 
function in eukaryote being a dynamic and reversible process. 
Otubain carries several key conserved domains: (i) the 
OTU (ovarian tumor domain) in which there is an active cysteine 
protease triad (ii) a nuclear localization signal, (iii) 
a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac 
(where phi indicates an aromatic amino acid, x indicates any 
amino acid and Ac indicates an acidic amino acid), (iv) a 
Ub-associated (UBA)-like domain and (v) the LxxLL motif.
Length=240

 Score = 212 bits (542),  Expect = 1e-66, Method: Composition-based stats.
 Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 15/245 (6%)

Query  79   QGPLVSMKQSSNVIALEYANADPTYVTKTNALAVTHPFTRVMKGDGNCGWRAVAFGYFES  138
            QGPLVS K   + +  EYA ADP Y+ K   L+  +   R  +GDGNC +RA  F Y E 
Sbjct  5    QGPLVSEKGPLSALEKEYAKADPIYLQKIQDLSEKYSGIRRTRGDGNCFYRAFGFSYLEL  64

Query  139  LFNLRDTLQVHRELLRIKSLSSLLDQVGQQEHLYEIFVEATEQVFTQVSEAIQNGVHDES  198
            L  L    ++ R   R++SL   L  +G  E  +E F +A  ++  +V + +     +  
Sbjct  65   L--LESKDEIDRFKARVESLKEALVALGFDEDTFEDFCDAFLELLKKVEDGVSTSESE--  120

Query  199  FLVEAFNIDYNSSAVITHFRLLTSAWMKLNPHRYQAFLSLPLD--QYCATRIETVKTEID  256
             L++AFN    S  ++   RLLTSA++K +   Y+ F+       ++C   +E +  E D
Sbjct  121  -LLQAFNDQETSDYIVYFLRLLTSAYLKTHADEYEPFIDGGGTVEEFCQQEVEPMNKEAD  179

Query  257  EVGLQALVDGVIEGSGFGVEILYLDRSA-GDAVTPHLLTPSRPSSAT---IRLLYRPGHY  312
             + + AL + +    G  V + YLDRSA G+ V  H       +      I LLYRPGHY
Sbjct  180  HLQIIALAEAL----GVPVRVEYLDRSAEGNTVNHHDFPGEDDTEEQAPFITLLYRPGHY  235

Query  313  DILYR  317
            DILY+
Sbjct  236  DILYK  240



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00021675

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         366     7e-123


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 366 bits (943),  Expect = 7e-123, Method: Composition-based stats.
 Identities = 179/505 (35%), Positives = 264/505 (52%), Gaps = 63/505 (12%)

Query  26   VASFSTLGGLLFGYDQGVISGVITMESFGARFPHI------YTDSSFKGWFVSTLLLAAW  79
            VA  + LGG LFGYD GVI   +T+  F   F            S   G  VS   +  +
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  80   FGSLINGPIADRLGRKLSINLAVVVFVIGSAIQCGAV---TIPMLFAGRAIAGLAVGQLT  136
             GSL  G + DR GRK S+ +A V+FVIG+ +Q  A    ++  L  GR + G+ VG  +
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  137  MVVPLYISEVSVAEIRGSLVVIQQLSITIGILVSYWINYGTNYIGGSRCAPDAPFSNGSK  196
            ++ P+YISE++  ++RG+L  + QL+IT GIL++Y    G N    S             
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNS-------------  167

Query  197  FDPYRDVPSGGCDGQSDASWRLPLALQILPAMILGLGMLFFPETPRWLMMKERYDDALRS  256
                               WR+PL LQ++PA++L +G+LF PE+PRWL+ K R ++A   
Sbjct  168  -----------------DGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREV  210

Query  257  LSKLRRKARDCPELVNEYLEIKASILLENTFAREHFPNMSGLRLHAAQYLSFLTTWARFK  316
            L+KLR       EL      ++A    E    +E                   +T  R +
Sbjct  211  LAKLRGVPDVDRELDEIKDSLEAGQEAEKASWKE-----------------LFSTKTRRQ  253

Query  317  RLAIGCAVMFFQQFMGCNAMIYYAPTIFGQLGLDGNTTSLLATGVYGIVNCLSTLPALFL  376
            RL IG  +  FQQ  G NA+ YY+ TIF  LGL   + S L T + G+VN + T  A+FL
Sbjct  254  RLLIGVMLQIFQQLTGINAIFYYSTTIFENLGL---SDSFLVTIIVGVVNFVFTFIAIFL  310

Query  377  IDKVGRRPLLMFGATGTCISLAIVGGIIGAYGSDLVNHKSAGWAGIAFIYIYDINFSYSF  436
            +D+ GRRPLL+ GA G  I   I+G +       +     AG   I FI ++   F+  +
Sbjct  311  VDRFGRRPLLLLGAAGMAICFVILGIVALLG---VSKSDWAGIVAIVFIALFIAFFAMGW  367

Query  437  APIGWVLPSEIFNLSIRSKAISITTSATWMCNFIIGLVTPDMLNTIT-YGTYIFFAAFCL  495
             P+ WV+ SE+F LS+RSKA+++ T+A W+ NF+IG + P + + I    T+  FA   +
Sbjct  368  GPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLV  427

Query  496  LALAFTFFCIPETRGKTLEDMDLIF  520
            L + F FF +PET+G+TLE++D +F
Sbjct  428  LFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.326    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690414096


Query= TCONS_00021676

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         371     2e-124


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 371 bits (955),  Expect = 2e-124, Method: Composition-based stats.
 Identities = 179/505 (35%), Positives = 264/505 (52%), Gaps = 63/505 (12%)

Query  26   VASFSTLGGLLFGYDQGVISGVITMESFGARFPHI------YTDSSFKGWFVSTLLLAAW  79
            VA  + LGG LFGYD GVI   +T+  F   F            S   G  VS   +  +
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  80   FGSLINGPIADRLGRKLSINLAVVVFVIGSAIQCGAV---TIPMLFAGRAIAGLAVGQLT  136
             GSL  G + DR GRK S+ +A V+FVIG+ +Q  A    ++  L  GR + G+ VG  +
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  137  MVVPLYISEVSVAEIRGSLVVIQQLSITIGILVSYWINYGTNYIGGSRCAPDAPFSNGSK  196
            ++ P+YISE++  ++RG+L  + QL+IT GIL++Y    G N    S             
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNS-------------  167

Query  197  FDPYRDVPSGGCDGQSDASWRLPLALQILPAMILGLGMLFFPETPRWLMMKERYDDALRS  256
                               WR+PL LQ++PA++L +G+LF PE+PRWL+ K R ++A   
Sbjct  168  -----------------DGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREV  210

Query  257  LSKLRRKARDCPELVNEYLEIKASILLENTFAREHFPNMSGLRLHAAQYLSFLTTWARFK  316
            L+KLR       EL      ++A    E    +E                   +T  R +
Sbjct  211  LAKLRGVPDVDRELDEIKDSLEAGQEAEKASWKE-----------------LFSTKTRRQ  253

Query  317  RLAIGCAVMFFQQFMGCNAMIYYAPTIFGQLGLDGNTTSLLATGVYGIVNCLSTLPALFL  376
            RL IG  +  FQQ  G NA+ YY+ TIF  LGL   + S L T + G+VN + T  A+FL
Sbjct  254  RLLIGVMLQIFQQLTGINAIFYYSTTIFENLGL---SDSFLVTIIVGVVNFVFTFIAIFL  310

Query  377  IDKVGRRPLLMFGATGTCISLAIVGGIIGAYGSDLVNHKSAGWAGIAFIYIYDINFSYSF  436
            +D+ GRRPLL+ GA G  I   I+G +       +     AG   I FI ++   F+  +
Sbjct  311  VDRFGRRPLLLLGAAGMAICFVILGIVALLG---VSKSDWAGIVAIVFIALFIAFFAMGW  367

Query  437  APIGWVLPSEIFNLSIRSKAISITTSATWMCNFIIGLVTPDMLNTIT-YGTYIFFAAFCL  495
             P+ WV+ SE+F LS+RSKA+++ T+A W+ NF+IG + P + + I    T+  FA   +
Sbjct  368  GPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLV  427

Query  496  LALAFTFFCIPETRGKTLEDMDLIF  520
            L + F FF +PET+G+TLE++D +F
Sbjct  428  LFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.326    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00021677

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         371     2e-124


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 371 bits (955),  Expect = 2e-124, Method: Composition-based stats.
 Identities = 179/505 (35%), Positives = 264/505 (52%), Gaps = 63/505 (12%)

Query  26   VASFSTLGGLLFGYDQGVISGVITMESFGARFPHI------YTDSSFKGWFVSTLLLAAW  79
            VA  + LGG LFGYD GVI   +T+  F   F            S   G  VS   +  +
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  80   FGSLINGPIADRLGRKLSINLAVVVFVIGSAIQCGAV---TIPMLFAGRAIAGLAVGQLT  136
             GSL  G + DR GRK S+ +A V+FVIG+ +Q  A    ++  L  GR + G+ VG  +
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  137  MVVPLYISEVSVAEIRGSLVVIQQLSITIGILVSYWINYGTNYIGGSRCAPDAPFSNGSK  196
            ++ P+YISE++  ++RG+L  + QL+IT GIL++Y    G N    S             
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNS-------------  167

Query  197  FDPYRDVPSGGCDGQSDASWRLPLALQILPAMILGLGMLFFPETPRWLMMKERYDDALRS  256
                               WR+PL LQ++PA++L +G+LF PE+PRWL+ K R ++A   
Sbjct  168  -----------------DGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREV  210

Query  257  LSKLRRKARDCPELVNEYLEIKASILLENTFAREHFPNMSGLRLHAAQYLSFLTTWARFK  316
            L+KLR       EL      ++A    E    +E                   +T  R +
Sbjct  211  LAKLRGVPDVDRELDEIKDSLEAGQEAEKASWKE-----------------LFSTKTRRQ  253

Query  317  RLAIGCAVMFFQQFMGCNAMIYYAPTIFGQLGLDGNTTSLLATGVYGIVNCLSTLPALFL  376
            RL IG  +  FQQ  G NA+ YY+ TIF  LGL   + S L T + G+VN + T  A+FL
Sbjct  254  RLLIGVMLQIFQQLTGINAIFYYSTTIFENLGL---SDSFLVTIIVGVVNFVFTFIAIFL  310

Query  377  IDKVGRRPLLMFGATGTCISLAIVGGIIGAYGSDLVNHKSAGWAGIAFIYIYDINFSYSF  436
            +D+ GRRPLL+ GA G  I   I+G +       +     AG   I FI ++   F+  +
Sbjct  311  VDRFGRRPLLLLGAAGMAICFVILGIVALLG---VSKSDWAGIVAIVFIALFIAFFAMGW  367

Query  437  APIGWVLPSEIFNLSIRSKAISITTSATWMCNFIIGLVTPDMLNTIT-YGTYIFFAAFCL  495
             P+ WV+ SE+F LS+RSKA+++ T+A W+ NF+IG + P + + I    T+  FA   +
Sbjct  368  GPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLV  427

Query  496  LALAFTFFCIPETRGKTLEDMDLIF  520
            L + F FF +PET+G+TLE++D +F
Sbjct  428  LFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.326    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00021678

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         371     2e-124


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 371 bits (955),  Expect = 2e-124, Method: Composition-based stats.
 Identities = 179/505 (35%), Positives = 264/505 (52%), Gaps = 63/505 (12%)

Query  26   VASFSTLGGLLFGYDQGVISGVITMESFGARFPHI------YTDSSFKGWFVSTLLLAAW  79
            VA  + LGG LFGYD GVI   +T+  F   F            S   G  VS   +  +
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  80   FGSLINGPIADRLGRKLSINLAVVVFVIGSAIQCGAV---TIPMLFAGRAIAGLAVGQLT  136
             GSL  G + DR GRK S+ +A V+FVIG+ +Q  A    ++  L  GR + G+ VG  +
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  137  MVVPLYISEVSVAEIRGSLVVIQQLSITIGILVSYWINYGTNYIGGSRCAPDAPFSNGSK  196
            ++ P+YISE++  ++RG+L  + QL+IT GIL++Y    G N    S             
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNS-------------  167

Query  197  FDPYRDVPSGGCDGQSDASWRLPLALQILPAMILGLGMLFFPETPRWLMMKERYDDALRS  256
                               WR+PL LQ++PA++L +G+LF PE+PRWL+ K R ++A   
Sbjct  168  -----------------DGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREV  210

Query  257  LSKLRRKARDCPELVNEYLEIKASILLENTFAREHFPNMSGLRLHAAQYLSFLTTWARFK  316
            L+KLR       EL      ++A    E    +E                   +T  R +
Sbjct  211  LAKLRGVPDVDRELDEIKDSLEAGQEAEKASWKE-----------------LFSTKTRRQ  253

Query  317  RLAIGCAVMFFQQFMGCNAMIYYAPTIFGQLGLDGNTTSLLATGVYGIVNCLSTLPALFL  376
            RL IG  +  FQQ  G NA+ YY+ TIF  LGL   + S L T + G+VN + T  A+FL
Sbjct  254  RLLIGVMLQIFQQLTGINAIFYYSTTIFENLGL---SDSFLVTIIVGVVNFVFTFIAIFL  310

Query  377  IDKVGRRPLLMFGATGTCISLAIVGGIIGAYGSDLVNHKSAGWAGIAFIYIYDINFSYSF  436
            +D+ GRRPLL+ GA G  I   I+G +       +     AG   I FI ++   F+  +
Sbjct  311  VDRFGRRPLLLLGAAGMAICFVILGIVALLG---VSKSDWAGIVAIVFIALFIAFFAMGW  367

Query  437  APIGWVLPSEIFNLSIRSKAISITTSATWMCNFIIGLVTPDMLNTIT-YGTYIFFAAFCL  495
             P+ WV+ SE+F LS+RSKA+++ T+A W+ NF+IG + P + + I    T+  FA   +
Sbjct  368  GPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLV  427

Query  496  LALAFTFFCIPETRGKTLEDMDLIF  520
            L + F FF +PET+G+TLE++D +F
Sbjct  428  LFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.326    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0787    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00021679

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         189     1e-57


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 189 bits (481),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 90/262 (34%), Positives = 132/262 (50%), Gaps = 39/262 (15%)

Query  26   VASFSTLGGLLFGYDQGVISGVITMESFGARFPHI------YTDSSFKGWFVSTLLLAAW  79
            VA  + LGG LFGYD GVI   +T+  F   F            S   G  VS   +  +
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  80   FGSLINGPIADRLGRKLSINLAVVVFVIGSAIQCGAV---TIPMLFAGRAIAGLAVGQLT  136
             GSL  G + DR GRK S+ +A V+FVIG+ +Q  A    ++  L  GR + G+ VG  +
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  137  MVVPLYISEVSVAEIRGSLVVIQQLSITIGILVSYWINYGTNYIGGSRCAPDAPFSNGSK  196
            ++ P+YISE++  ++RG+L  + QL+IT GIL++Y    G N    S             
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNS-------------  167

Query  197  FDPYRDVPSGGCDGQSDASWRLPLALQILPAMILGLGMLFFPETPRWLMMKERYDDALRS  256
                               WR+PL LQ++PA++L +G+LF PE+PRWL+ K R ++A   
Sbjct  168  -----------------DGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREV  210

Query  257  LSKLRRKARDCPELVNEYLEIK  278
            L+KLR       EL      ++
Sbjct  211  LAKLRGVPDVDRELDEIKDSLE  232



Lambda      K        H        a         alpha
   0.324    0.142    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00021680

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         235     1e-74


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 235 bits (601),  Expect = 1e-74, Method: Composition-based stats.
 Identities = 108/293 (37%), Positives = 161/293 (55%), Gaps = 24/293 (8%)

Query  2    ILGLGMLFFPETPRWLMMKERYDDALRSLSKLRRKARDCPELVNEYLEIKASILLENTFA  61
            +L +G+LF PE+PRWL+ K R ++A   L+KLR       EL      ++A    E    
Sbjct  183  LLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAEKASW  242

Query  62   REHFPNMSGLRLHAAQYLSFLTTWARFKRLAIGCAVMFFQQFMGCNAMIYYAPTIFGQLG  121
            +E                   +T  R +RL IG  +  FQQ  G NA+ YY+ TIF  LG
Sbjct  243  KE-----------------LFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLG  285

Query  122  LDGNTTSLLATGVYGIVNCLSTLPALFLIDKVGRRPLLMFGATGTCISLAIVGGIIGAYG  181
            L   + S L T + G+VN + T  A+FL+D+ GRRPLL+ GA G  I   I+G +     
Sbjct  286  L---SDSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLG-  341

Query  182  SDLVNHKSAGWAGIAFIYIYDINFSYSFAPIGWVLPSEIFNLSIRSKAISITTSATWMCN  241
              +     AG   I FI ++   F+  + P+ WV+ SE+F LS+RSKA+++ T+A W+ N
Sbjct  342  --VSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLAN  399

Query  242  FIIGLVTPDMLNTIT-YGTYIFFAAFCLLALAFTFFCIPETRGKTLEDMDLIF  293
            F+IG + P + + I    T+  FA   +L + F FF +PET+G+TLE++D +F
Sbjct  400  FLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.327    0.141    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00021681

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain. This ...  197     9e-64


>CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain.  This family 
of proteins conserved from plants to humans is a highly specific 
ubiquitin iso-peptidase that removes ubiquitin from proteins. 
The modification of cellular proteins by ubiquitin (Ub) 
is an important event that underlies protein stability and 
function in eukaryote being a dynamic and reversible process. 
Otubain carries several key conserved domains: (i) the 
OTU (ovarian tumor domain) in which there is an active cysteine 
protease triad (ii) a nuclear localization signal, (iii) 
a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac 
(where phi indicates an aromatic amino acid, x indicates any 
amino acid and Ac indicates an acidic amino acid), (iv) a 
Ub-associated (UBA)-like domain and (v) the LxxLL motif.
Length=240

 Score = 197 bits (502),  Expect = 9e-64, Method: Composition-based stats.
 Identities = 78/239 (33%), Positives = 119/239 (50%), Gaps = 15/239 (6%)

Query  1    MKQSSNVIALEYANADPTYVTKTNVLAVTHPFTRVMKGDGNCGWRAVAFGYFESLFNLRD  60
             K   + +  EYA ADP Y+ K   L+  +   R  +GDGNC +RA  F Y E L  L  
Sbjct  11   EKGPLSALEKEYAKADPIYLQKIQDLSEKYSGIRRTRGDGNCFYRAFGFSYLELL--LES  68

Query  61   TLQVHRELLRIKSLSSLLDQVGQQEHLYEIFVEATEQVFTQVSEAIQNGVHDESFLVEAF  120
              ++ R   R++SL   L  +G  E  +E F +A  ++  +V + +     +   L++AF
Sbjct  69   KDEIDRFKARVESLKEALVALGFDEDTFEDFCDAFLELLKKVEDGVSTSESE---LLQAF  125

Query  121  NIDYNSSAVITHFRLLTSAWMKLNPHRYQAFLSLPLD--QYCATRIETVKTEIDEVGLQA  178
            N    S  ++   RLLTSA++K +   Y+ F+       ++C   +E +  E D + + A
Sbjct  126  NDQETSDYIVYFLRLLTSAYLKTHADEYEPFIDGGGTVEEFCQQEVEPMNKEADHLQIIA  185

Query  179  LVDGVIEGSGFGVEILYLDRSA-GDAVTPHLLTPSRPSSAT---IRLLYRPGHYDILYR  233
            L + +    G  V + YLDRSA G+ V  H       +      I LLYRPGHYDILY+
Sbjct  186  LAEAL----GVPVRVEYLDRSAEGNTVNHHDFPGEDDTEEQAPFITLLYRPGHYDILYK  240



Lambda      K        H        a         alpha
   0.320    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00021682

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain. This ...  200     6e-62


>CDD:431191 pfam10275, Peptidase_C65, Peptidase C65 Otubain.  This family 
of proteins conserved from plants to humans is a highly specific 
ubiquitin iso-peptidase that removes ubiquitin from proteins. 
The modification of cellular proteins by ubiquitin (Ub) 
is an important event that underlies protein stability and 
function in eukaryote being a dynamic and reversible process. 
Otubain carries several key conserved domains: (i) the 
OTU (ovarian tumor domain) in which there is an active cysteine 
protease triad (ii) a nuclear localization signal, (iii) 
a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac 
(where phi indicates an aromatic amino acid, x indicates any 
amino acid and Ac indicates an acidic amino acid), (iv) a 
Ub-associated (UBA)-like domain and (v) the LxxLL motif.
Length=240

 Score = 200 bits (510),  Expect = 6e-62, Method: Composition-based stats.
 Identities = 79/249 (32%), Positives = 122/249 (49%), Gaps = 16/249 (6%)

Query  68   QELSNEFEADVQQSSNVIALEYANADPTYVTKTNALAVTHPFTRVMKGDGNCGWRAVAFG  127
            +E      ++    S  +  EYA ADP Y+ K   L+  +   R  +GDGNC +RA  F 
Sbjct  2    EEAQGPLVSEKGPLS-ALEKEYAKADPIYLQKIQDLSEKYSGIRRTRGDGNCFYRAFGFS  60

Query  128  YFESLFNLRDTLQVHRELLRIKSLSSLLDQVGQQEHLYEIFVEATEQVFTQVSEAIQNGV  187
            Y E L  L    ++ R   R++SL   L  +G  E  +E F +A  ++  +V + +    
Sbjct  61   YLELL--LESKDEIDRFKARVESLKEALVALGFDEDTFEDFCDAFLELLKKVEDGVSTSE  118

Query  188  HDESFLVEAFNIDYNSSAVITHFRLLTSAWMKLNPHRYQAFLSLPLD--QYCATRIETVK  245
             +   L++AFN    S  ++   RLLTSA++K +   Y+ F+       ++C   +E + 
Sbjct  119  SE---LLQAFNDQETSDYIVYFLRLLTSAYLKTHADEYEPFIDGGGTVEEFCQQEVEPMN  175

Query  246  TEIDEVGLQALVDGVIEGSGFGVEILYLDRSA-GDAVTPHLLTPSRPSSAT---IRLLYR  301
             E D + + AL + +    G  V + YLDRSA G+ V  H       +      I LLYR
Sbjct  176  KEADHLQIIALAEAL----GVPVRVEYLDRSAEGNTVNHHDFPGEDDTEEQAPFITLLYR  231

Query  302  PGHYDILYR  310
            PGHYDILY+
Sbjct  232  PGHYDILYK  240



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00021683

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         202     1e-61


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 202 bits (516),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 94/280 (34%), Positives = 138/280 (49%), Gaps = 39/280 (14%)

Query  26   VASFSTLGGLLFGYDQGVISGVITMESFGARFPHI------YTDSSFKGWFVSTLLLAAW  79
            VA  + LGG LFGYD GVI   +T+  F   F            S   G  VS   +  +
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  80   FGSLINGPIADRLGRKLSINLAVVVFVIGSAIQCGAV---TIPMLFAGRAIAGLAVGQLT  136
             GSL  G + DR GRK S+ +A V+FVIG+ +Q  A    ++  L  GR + G+ VG  +
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  137  MVVPLYISEVSVAEIRGSLVVIQQLSITIGILVSYWINYGTNYIGGSRCAPDAPFSNGSK  196
            ++ P+YISE++  ++RG+L  + QL+IT GIL++Y    G N    S             
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNS-------------  167

Query  197  FDPYRDVPSGGCDGQSDASWRLPLALQILPAMILGLGMLFFPETPRWLMMKERYDDALRS  256
                               WR+PL LQ++PA++L +G+LF PE+PRWL+ K R ++A   
Sbjct  168  -----------------DGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREV  210

Query  257  LSKLRRKARDCPELVNEYLEIKASILLENTFAREHFPNMS  296
            L+KLR       EL      ++A    E    +E F   +
Sbjct  211  LAKLRGVPDVDRELDEIKDSLEAGQEAEKASWKELFSTKT  250



Lambda      K        H        a         alpha
   0.325    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00026702

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         313     7e-103


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 313 bits (803),  Expect = 7e-103, Method: Composition-based stats.
 Identities = 158/455 (35%), Positives = 231/455 (51%), Gaps = 62/455 (14%)

Query  26   VASFSTLGGLLFGYDQGVISGVITMESFGARFPHI------YTDSSFKGWFVSTLLLAAW  79
            VA  + LGG LFGYD GVI   +T+  F   F            S   G  VS   +  +
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  80   FGSLINGPIADRLGRKLSINLAVVVFVIGSAIQCGAV---TIPMLFAGRAIAGLAVGQLT  136
             GSL  G + DR GRK S+ +A V+FVIG+ +Q  A    ++  L  GR + G+ VG  +
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  137  MVVPLYISEVSVAEIRGSLVVIQQLSITIGILVSYWINYGTNYIGGSRCAPDAPFSNGSK  196
            ++ P+YISE++  ++RG+L  + QL+IT GIL++Y    G N    S             
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNS-------------  167

Query  197  FDPYRDVPSGGCDGQSDASWRLPLALQILPAMILGLGMLFFPETPRWLMMKERYDDALRS  256
                               WR+PL LQ++PA++L +G+LF PE+PRWL+ K R ++A   
Sbjct  168  -----------------DGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREV  210

Query  257  LSKLRRKARDCPELVNEYLEIKASILLENTFAREHFPNMSGLRLHAAQYLSFLTTWARFK  316
            L+KLR       EL      ++A    E    +E                   +T  R +
Sbjct  211  LAKLRGVPDVDRELDEIKDSLEAGQEAEKASWKE-----------------LFSTKTRRQ  253

Query  317  RLAIGCAVMFFQQFMGCNAMIYYAPTIFGQLGLDGNTTSLLATGVYGIVNCLSTLPALFL  376
            RL IG  +  FQQ  G NA+ YY+ TIF  LGL   + S L T + G+VN + T  A+FL
Sbjct  254  RLLIGVMLQIFQQLTGINAIFYYSTTIFENLGL---SDSFLVTIIVGVVNFVFTFIAIFL  310

Query  377  IDKVGRRPLLMFGATGTCISLAIVGGIIGAYGSDLVNHKSAGWAGIAFIYIYDINFSYSF  436
            +D+ GRRPLL+ GA G  I   I+G +       +     AG   I FI ++   F+  +
Sbjct  311  VDRFGRRPLLLLGAAGMAICFVILGIVALLG---VSKSDWAGIVAIVFIALFIAFFAMGW  367

Query  437  APIGWVLPSEIFNLSIRSKAISITTSATWMCNLYV  471
             P+ WV+ SE+F LS+RSKA+++ T+A W+ N  +
Sbjct  368  GPVPWVIVSELFPLSVRSKAMALATAANWLANFLI  402



Lambda      K        H        a         alpha
   0.326    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 587408632


Query= TCONS_00021684

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         313     7e-103


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 313 bits (803),  Expect = 7e-103, Method: Composition-based stats.
 Identities = 158/455 (35%), Positives = 231/455 (51%), Gaps = 62/455 (14%)

Query  26   VASFSTLGGLLFGYDQGVISGVITMESFGARFPHI------YTDSSFKGWFVSTLLLAAW  79
            VA  + LGG LFGYD GVI   +T+  F   F            S   G  VS   +  +
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  80   FGSLINGPIADRLGRKLSINLAVVVFVIGSAIQCGAV---TIPMLFAGRAIAGLAVGQLT  136
             GSL  G + DR GRK S+ +A V+FVIG+ +Q  A    ++  L  GR + G+ VG  +
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  137  MVVPLYISEVSVAEIRGSLVVIQQLSITIGILVSYWINYGTNYIGGSRCAPDAPFSNGSK  196
            ++ P+YISE++  ++RG+L  + QL+IT GIL++Y    G N    S             
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNS-------------  167

Query  197  FDPYRDVPSGGCDGQSDASWRLPLALQILPAMILGLGMLFFPETPRWLMMKERYDDALRS  256
                               WR+PL LQ++PA++L +G+LF PE+PRWL+ K R ++A   
Sbjct  168  -----------------DGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREV  210

Query  257  LSKLRRKARDCPELVNEYLEIKASILLENTFAREHFPNMSGLRLHAAQYLSFLTTWARFK  316
            L+KLR       EL      ++A    E    +E                   +T  R +
Sbjct  211  LAKLRGVPDVDRELDEIKDSLEAGQEAEKASWKE-----------------LFSTKTRRQ  253

Query  317  RLAIGCAVMFFQQFMGCNAMIYYAPTIFGQLGLDGNTTSLLATGVYGIVNCLSTLPALFL  376
            RL IG  +  FQQ  G NA+ YY+ TIF  LGL   + S L T + G+VN + T  A+FL
Sbjct  254  RLLIGVMLQIFQQLTGINAIFYYSTTIFENLGL---SDSFLVTIIVGVVNFVFTFIAIFL  310

Query  377  IDKVGRRPLLMFGATGTCISLAIVGGIIGAYGSDLVNHKSAGWAGIAFIYIYDINFSYSF  436
            +D+ GRRPLL+ GA G  I   I+G +       +     AG   I FI ++   F+  +
Sbjct  311  VDRFGRRPLLLLGAAGMAICFVILGIVALLG---VSKSDWAGIVAIVFIALFIAFFAMGW  367

Query  437  APIGWVLPSEIFNLSIRSKAISITTSATWMCNLYV  471
             P+ WV+ SE+F LS+RSKA+++ T+A W+ N  +
Sbjct  368  GPVPWVIVSELFPLSVRSKAMALATAANWLANFLI  402



Lambda      K        H        a         alpha
   0.326    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 587408632


Query= TCONS_00021685

Length=587
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         355     1e-117


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 355 bits (912),  Expect = 1e-117, Method: Composition-based stats.
 Identities = 175/502 (35%), Positives = 259/502 (52%), Gaps = 69/502 (14%)

Query  51   LGGLLFGYDQGVISGVITMESFGARFPHIYTDSSFKGWFVSTLLLGTVNVLIFPSKNNTD  110
            LGG LFGYD GVI   +T+  F   F    + SS     V + L+    V IF       
Sbjct  7    LGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLI----VSIF-------  55

Query  111  ALLAAWFGSLINGPIADRLGRKLSINLAVVVFVIGSAIQCGAV---TIPMLFAGRAIAGL  167
              +  + GSL  G + DR GRK S+ +A V+FVIG+ +Q  A    ++  L  GR + G+
Sbjct  56   -SVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGI  114

Query  168  AVGQLTMVVPLYISEVSVAEIRGSLVVIQQLSITIGILVSYWINYGTNYIGGSRCAPDAP  227
             VG  +++ P+YISE++  ++RG+L  + QL+IT GIL++Y    G N    S       
Sbjct  115  GVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNS-------  167

Query  228  FSNGSKFDPYRDVPSGGCDGQSDASWRLPLALQILPAMILGLGMLFFPETPRWLMMKERY  287
                                     WR+PL LQ++PA++L +G+LF PE+PRWL+ K R 
Sbjct  168  -----------------------DGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRL  204

Query  288  DDALRSLSKLRRKARDCPELVNEYLEIKASILLENTFAREHFPNMSGLRLHAAQYLSFLT  347
            ++A   L+KLR       EL      ++A    E    +E                   +
Sbjct  205  EEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAEKASWKE-----------------LFS  247

Query  348  TWARFKRLAIGCAVMFFQQFMGCNAMIYYAPTIFGQLGLDGNTTSLLATGVYGIVNCLST  407
            T  R +RL IG  +  FQQ  G NA+ YY+ TIF  LGL   + S L T + G+VN + T
Sbjct  248  TKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGL---SDSFLVTIIVGVVNFVFT  304

Query  408  LPALFLIDKVGRRPLLMFGATGTCISLAIVGGIIGAYGSDLVNHKSAGWAGIAFIYIYDI  467
              A+FL+D+ GRRPLL+ GA G  I   I+G +       +     AG   I FI ++  
Sbjct  305  FIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLG---VSKSDWAGIVAIVFIALFIA  361

Query  468  NFSYSFAPIGWVLPSEIFNLSIRSKAISITTSATWMCNFIIGLVTPDMLNTIT-YGTYIF  526
             F+  + P+ WV+ SE+F LS+RSKA+++ T+A W+ NF+IG + P + + I    T+  
Sbjct  362  FFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFI  421

Query  527  FAAFCLLALAFTFFCIPETRGK  548
            FA   +L + F FF +PET+G+
Sbjct  422  FAGLLVLFIIFVFFFVPETKGR  443



Lambda      K        H        a         alpha
   0.325    0.141    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 739741860


Query= TCONS_00021686

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         232     2e-73


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 232 bits (593),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 107/293 (37%), Positives = 160/293 (55%), Gaps = 24/293 (8%)

Query  2    ILGLGMLFFPETPRWLMMKERYDDALRSLSKLRRKARDCPELVNEYLEIKASILLENTFA  61
            +L +G+LF PE+PRWL+ K R ++A   L+KLR       EL      ++A    E    
Sbjct  183  LLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAEKASW  242

Query  62   REHFPNMSGLRLHAAQYLSFLTTWARFKRLAIGCAVMFFQQFMGCNAMIYYAPTIFGQLG  121
            +E                   +T  R +RL IG  +  FQQ  G NA+ YY+ TIF  LG
Sbjct  243  KE-----------------LFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLG  285

Query  122  LDGNTTSLLATGVYGIVNCLSTLPALFLIDKVGRRPLLMFGATGTCISLAIVGGIIGAYG  181
            L   + S L T + G+VN + T  A+FL+D+ GRRPLL+ GA G  I   I+G +     
Sbjct  286  L---SDSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLG-  341

Query  182  SDLVNHKSAGWAGIAFIYIYDINFSYSFAPIGWVLPSEIFNLSIRSKAISITTSATWMCN  241
              +     AG   I FI ++   F+  + P+ WV+ SE+F LS+RSKA+++ T+A W+ N
Sbjct  342  --VSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLAN  399

Query  242  FIIGLVTPDMLNTIT-YGTYIFFAAFCLLALAFTFFCIPETRGKVLEDMDLIF  293
            F+IG + P + + I    T+  FA   +L + F FF +PET+G+ LE++D +F
Sbjct  400  FLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.327    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00021687

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00021689

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00021690

Length=336


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00021691

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463326 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting f...  332     2e-112


>CDD:463326 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. 
 The spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and 
U5) and proteins, catalyzes the excision of introns from pre-mRNAs 
in two successive trans-esterification reactions. Step 
2 depends upon integral spliceosome constituents such as U5 
snRNA and Prp8 and non-spliceosomal proteins Prp16, Slu7, 
Prp18, and Prp22. ATP hydrolysis by the DEAH-box enzyme Prp16 
promotes a conformational change in the spliceosome that leads 
to protection of the 3'ss from targeted RNase H cleavage. 
This change, which probably reflects binding of the 3'ss 
PyAG in the catalytic centre of the spliceosome, requires the 
ordered recruitment of Slu7, Prp18, and Prp22 to the spliceosome. 
There is a close functional relationship between Prp8, 
Prp18, and Slu7, and Prp18 interacts with Slu7, so that together 
they recruit Prp22 to the spliceosome. Most members 
of the family carry a zinc-finger of the CCHC-type upstream 
of this domain.
Length=258

 Score = 332 bits (854),  Expect = 2e-112, Method: Composition-based stats.
 Identities = 140/262 (53%), Positives = 185/262 (71%), Gaps = 20/262 (8%)

Query  172  LGWDAKRDRWNGYDPSEYRQVIEEYEELEKLKRNTKPGAQDGKKIMDGELDDEEAAIE--  229
            LG+DAKRDRWNGYDPSEY++V+EEYE+LE+ ++  K   ++  K    +  D++ + E  
Sbjct  1    LGYDAKRDRWNGYDPSEYKKVVEEYEKLEEARKKLK--EEELDKKEKDDEGDDDDSEEED  58

Query  230  -----EARYAEESDMGRQ-----QSTATRNLRIREDTAKYLLNLDLDSAKYDPKTRRMVD  279
                 E +YA+E+DMG Q     Q T  RNLRIREDTAKYLLNLDL+SA YDPKTR M D
Sbjct  59   NDDEDEDKYADEADMGGQKVDSKQRTTVRNLRIREDTAKYLLNLDLNSAYYDPKTRSMRD  118

Query  280  MGAQD---DQAAALVAEENFVRASGDAAEFERAQRYAWESQERGDKKIHLQANPTSGEIL  336
                +    +  AL A +NFVRASGDAAEFE+ QR+AWE+QE+GD  +HLQANPT  E+L
Sbjct  119  NPLPNVDPSEDKALFAGDNFVRASGDAAEFEKLQRFAWEAQEKGD-DVHLQANPTQAELL  177

Query  337  RKKEQAETEAKRQAQRKALLEKYGGEEYLKPTPLRETMVIENERFVEYDESGA-IKGAPK  395
             K+ + + E  ++ ++K++LEKYGGEE+L   P +E ++ + ER+VEYD SG  IKG  K
Sbjct  178  YKEFKEKKEKLKEKKKKSILEKYGGEEHL-EAPPKELLLAQTERYVEYDRSGRVIKGQEK  236

Query  396  NAVKSKYPEDVLVNNHTTVFGS  417
               KSKY EDV +NNHT+V+GS
Sbjct  237  AKAKSKYEEDVYINNHTSVWGS  258



Lambda      K        H        a         alpha
   0.312    0.128    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00021692

Length=482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463326 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting f...  332     5e-113


>CDD:463326 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. 
 The spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and 
U5) and proteins, catalyzes the excision of introns from pre-mRNAs 
in two successive trans-esterification reactions. Step 
2 depends upon integral spliceosome constituents such as U5 
snRNA and Prp8 and non-spliceosomal proteins Prp16, Slu7, 
Prp18, and Prp22. ATP hydrolysis by the DEAH-box enzyme Prp16 
promotes a conformational change in the spliceosome that leads 
to protection of the 3'ss from targeted RNase H cleavage. 
This change, which probably reflects binding of the 3'ss 
PyAG in the catalytic centre of the spliceosome, requires the 
ordered recruitment of Slu7, Prp18, and Prp22 to the spliceosome. 
There is a close functional relationship between Prp8, 
Prp18, and Slu7, and Prp18 interacts with Slu7, so that together 
they recruit Prp22 to the spliceosome. Most members 
of the family carry a zinc-finger of the CCHC-type upstream 
of this domain.
Length=258

 Score = 332 bits (853),  Expect = 5e-113, Method: Composition-based stats.
 Identities = 140/262 (53%), Positives = 185/262 (71%), Gaps = 20/262 (8%)

Query  112  LGWDAKRDRWNGYDPSEYRQVIEEYEELEKLKRNTKPGAQDGKKIMDGELDDEEAAIE--  169
            LG+DAKRDRWNGYDPSEY++V+EEYE+LE+ ++  K   ++  K    +  D++ + E  
Sbjct  1    LGYDAKRDRWNGYDPSEYKKVVEEYEKLEEARKKLK--EEELDKKEKDDEGDDDDSEEED  58

Query  170  -----EARYAEESDMGRQ-----QSTATRNLRIREDTAKYLLNLDLDSAKYDPKTRRMVD  219
                 E +YA+E+DMG Q     Q T  RNLRIREDTAKYLLNLDL+SA YDPKTR M D
Sbjct  59   NDDEDEDKYADEADMGGQKVDSKQRTTVRNLRIREDTAKYLLNLDLNSAYYDPKTRSMRD  118

Query  220  MGAQD---DQAAALVAEENFVRASGDAAEFERAQRYAWESQERGDKKIHLQANPTSGEIL  276
                +    +  AL A +NFVRASGDAAEFE+ QR+AWE+QE+GD  +HLQANPT  E+L
Sbjct  119  NPLPNVDPSEDKALFAGDNFVRASGDAAEFEKLQRFAWEAQEKGD-DVHLQANPTQAELL  177

Query  277  RKKEQAETEAKRQAQRKALLEKYGGEEYLKPTPLRETMVIENERFVEYDESGA-IKGAPK  335
             K+ + + E  ++ ++K++LEKYGGEE+L   P +E ++ + ER+VEYD SG  IKG  K
Sbjct  178  YKEFKEKKEKLKEKKKKSILEKYGGEEHL-EAPPKELLLAQTERYVEYDRSGRVIKGQEK  236

Query  336  NAVKSKYPEDVLVNNHTTVFGS  357
               KSKY EDV +NNHT+V+GS
Sbjct  237  AKAKSKYEEDVYINNHTSVWGS  258



Lambda      K        H        a         alpha
   0.311    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 591999806


Query= TCONS_00021693

Length=1656
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395085 pfam00136, DNA_pol_B, DNA polymerase family B. This re...  391     4e-123
CDD:464119 pfam14260, zf-C4pol, C4-type zinc-finger of DNA polyme...  103     4e-27 
CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, ex...  64.4    4e-11 


>CDD:395085 pfam00136, DNA_pol_B, DNA polymerase family B.  This region of 
DNA polymerase B appears to consist of more than one structural 
domain, possibly including elongation, DNA-binding and 
dNTP binding activities.
Length=439

 Score = 391 bits (1008),  Expect = 4e-123, Method: Composition-based stats.
 Identities = 154/462 (33%), Positives = 237/462 (51%), Gaps = 34/462 (7%)

Query  1058  IDFFSVFSRGSQFKVESLMFRIAKPENYLLVSPSRKQV---GQQNALECLPLVMEPQSDF  1114
             I    V   G Q +VES + R+A  E ++L      +    G Q A      V+EP+  F
Sbjct  1     IPQSRVLEGGQQIRVESCLLRLALEEGFILPDRPSAKGDEDGYQGAT-----VIEPKKGF  55

Query  1115  YTSPLLVLDFQSLYPSIMIAYNYCYSTFLGRVHLWRGRNKMGFMDYKRQPRVLELLKDKV  1174
             Y  P+LVLDF SLYPSI+ A+N CY+T +  V      N +   D              V
Sbjct  56    YDKPVLVLDFNSLYPSIIQAHNLCYTTLVRSV---DEANNLPPEDNLIT----------V  102

Query  1175  NIAPNGMMYVKPEVRQSLLARMLAEILETRVMVKAGMKMDKDDKALQRLLNNRQLALKLI  1234
                P G+ +VK  VR+ LL ++L ++L  R  +K  +K + D    + +L+ +QLALK+ 
Sbjct  103   ECTPRGVYFVKDHVREGLLPKLLKDLLAKRKAIKKLLKEETDP-FERAILDKQQLALKIT  161

Query  1235  ANVTYGYTSASFSGRMPCSEIADSIVQSGRETLEKAIALIHSVERWGAEVVYGDTDSLFV  1294
             AN  YG+T  + +GR+PC  IA S+   GRE LE    L+  +  +   V+YGDTDS+F+
Sbjct  162   ANSVYGFTGFA-NGRLPCLPIAASVTAIGREMLENTKDLVEGMYTYNFRVIYGDTDSVFI  220

Query  1295  YLKGRTRDEAFGIGEEIAKAVT-DINPHPIKLKFEKVYHPCVLLAKKRYVGFKYEHRNQK  1353
                G+  +EA  IG+E+A+ V  D+   PIKL+FEKVY P +L++KK+Y G KY      
Sbjct  221   EFGGKDVEEAMKIGDELAEHVNQDLFKSPIKLEFEKVYKPLLLISKKKYAGLKYT-APSN  279

Query  1354  EPEFDAKGIETVRRDGTPAEQKIEEKALKLLFRTADLTQ----VKRYFQKQCAKIMQGRV  1409
               + D KG++ VRRD  P  +++ +K L LL     L      V        + +   +V
Sbjct  280   FNKLDMKGVDLVRRDNCPLVKEVIKKVLDLLLSDRGLPVGLEFVISILNDARSDLRNNKV  339

Query  1410  SIQDFCFAKEVRLGTYSERGLLPPGAMISTRKMVEDPRSEPQYGERVPYVVV---TGAPG  1466
              ++ F  +KE+     + +    P   ++ R    +    P+ G+R+PYV+V    G   
Sbjct  340   PLEKFVISKELSKPPDNYKSKNLPHVEVALRMNKRNGE-APEVGDRIPYVIVKAAKGLKN  398

Query  1467  SRLVDRCVAPETLLHNAELELDAEYYINKNIIPPLERIFNLV  1508
               + +R   PE +L N  L +D EYY +  +IPP+ R+   +
Sbjct  399   LLIYERAEDPEYVLEN-NLPIDYEYYFSNQLIPPVARLLEPI  439


>CDD:464119 pfam14260, zf-C4pol, C4-type zinc-finger of DNA polymerase delta. 
 In fission yeast this zinc-finger domain appears is the 
region of Pol3 that binds directly to the B-subunit, Cdc1. 
Pol delta is a hetero-tetrameric enzyme comprising four evolutionarily 
well-conserved proteins: the catalytic subunit Pol3 
and three smaller subunits Cdc1, Cdc27 and Cdm1.
Length=68

 Score = 103 bits (259),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 43/73 (59%), Gaps = 5/73 (7%)

Query  1553  CIVCKSKLDHIGIPVCSDCLQQPHISLLSLVSRQQQAEKRVSDLHRICQSCMGVPSGDDV  1612
             C+ C +       P+C +C   P  S L L+SR ++ E+R + L  ICQ C G    ++V
Sbjct  1     CLGCGAP----EEPLCKNCRSDPQASYLELLSRLRELERRFNRLWTICQRCQGSL-HEEV  55

Query  1613  ICDSKDCPVFYSR  1625
             +CDS+DCPVFY R
Sbjct  56    LCDSRDCPVFYMR  68


>CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease 
domain.  This domain has 3' to 5' exonuclease activity and 
adopts a ribonuclease H type fold.
Length=333

 Score = 64.4 bits (157),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 38/181 (21%), Positives = 75/181 (41%), Gaps = 8/181 (4%)

Query  816  MSLEVHVNTRGVLLPNPE--EDEISCIFWCIQSDDQDVDVNGNLPGVHVGMIAQ-GSGDG  872
            +S ++   +     P+ E  +D I  I      D Q            +         D 
Sbjct  158  LSFDIECTSLPGKFPDAENVKDPIIQI--SCMLDGQGEPEPEPRFLFTLRECDSEDIEDF  215

Query  873  PTSKLSKALRIELEHEPTELDLINRLVDIVRYHDPDIITGYEVHNGSWGYLIERARKKYD  932
              +       +++   P+E +L+ R  + +R +DPDIITGY   N  W Y++ RA++ Y 
Sbjct  216  EYTPKPIYPGVKVFEFPSEKELLRRFFEFIRQYDPDIITGYNGDNFDWPYILNRAKELYI  275

Query  933  FDICDELSRVRSQAHGRFDKDADRWGFNHTSSIRVTGRHMINIWRAMRSELNLLQYTMEN  992
              +   + R+     GR       +G      ++++GR  ++++R ++ +  L  Y +  
Sbjct  276  VKL-SSIGRLNR--GGRSKVREIGFGTRSYEKVKISGRLHLDLYRVIKRDYKLPSYKLNA  332

Query  993  V  993
            V
Sbjct  333  V  333



Lambda      K        H        a         alpha
   0.318    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2112789834


Query= TCONS_00026705

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461574 pfam05183, RdRP, RNA dependent RNA polymerase. This fa...  160     2e-46


>CDD:461574 pfam05183, RdRP, RNA dependent RNA polymerase.  This family of 
proteins are eukaryotic RNA dependent RNA polymerases. These 
proteins are involved in post transcriptional gene silencing 
where they are thought to amplify dsRNA templates.
Length=557

 Score = 160 bits (408),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 62/121 (51%), Positives = 81/121 (67%), Gaps = 7/121 (6%)

Query  1    MKYTSDKAQDLDQDVTVNHITSFFVLYMKNDFLPRIAHAHLAWADRLEDGVNEEKCIRLA  60
            M Y+  K +DLD+ VT+  I  FFV YMKND L  IA+AHLA AD+ E+G+ + KC++LA
Sbjct  438  MDYSPGKPKDLDRPVTIEDIADFFVNYMKNDVLGLIANAHLAIADQSENGIFDPKCLKLA  497

Query  61   QLHSDAVDYNKTGKPANMAR----SLQPKVWPHFM--EKKHKPKEMIYKSNKILGQLYDA  114
            +LHS AVDY KTG P ++        +PK +P FM  EKK +PK   Y+S KILG+LY  
Sbjct  498  ELHSTAVDYPKTGIPVDLEELPRELRKPKEYPDFMEDEKKDRPKPY-YESTKILGKLYRE  556

Query  115  V  115
            V
Sbjct  557  V  557



Lambda      K        H        a         alpha
   0.320    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00021694

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  224     3e-72
CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  116     5e-32


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 224 bits (574),  Expect = 3e-72, Method: Composition-based stats.
 Identities = 90/248 (36%), Positives = 135/248 (54%), Gaps = 3/248 (1%)

Query  150  IPEQTRVGVVAFPTIRDAASTAMQLIRKGIPVQCMEILDDVQMDVINRAGGTGRTW--KT  207
            +PE   V +V FP+   A     ++ R GI    +E++D+  +D++    G  +      
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARAGIIPAALELMDNDALDLVEATLGFPKGLPRDA  60

Query  208  LPTLFFKFSGTKAGVSDS-INLTRELAKSNNAASFEFARDDREAHDLWSARKQSLWSMMS  266
               L  +F G     ++  +     + ++  A     A D+ EA  LW+ARK +L    +
Sbjct  61   AALLLVEFEGDDEETAEEELEAVEAILEAGGAGDVVVATDEAEAERLWAARKYALPLRDA  120

Query  267  LRKEGSEVWSTDVAVPISRLPDIIEISKKELDNLGLFASILGHIGDGNFHSSIMYDRKDA  326
            L   G  V+S DV+VP SRL D++   K+ LD  GL   + GH GDGN H  I++D +D 
Sbjct  121  LGGAGPAVFSEDVSVPRSRLADLVRDIKELLDKYGLVVCLFGHAGDGNLHLYILFDFRDP  180

Query  327  DQMERVEKVVHDMVDRALEMEGSCTGEHGVGLGKKASLKKELGPATLDVMRSIKKALDPH  386
            +Q ER EK+  +++D ALE+ GS +GEHGVG  KK  L++E G   L +MR IK A DP 
Sbjct  181  EQEERAEKLFDEIMDLALELGGSISGEHGVGRDKKPYLEREFGEEGLALMRRIKAAFDPK  240

Query  387  WLLNPGKI  394
             +LNPGK+
Sbjct  241  GILNPGKV  248


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 116 bits (292),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 40/115 (35%), Positives = 61/115 (53%), Gaps = 3/115 (3%)

Query  2    PMVPYSGGSSLEANFSAPYGGLTIDFAMMNKIIEIHEDDMDIVVQPSIQWMELNEKIKHT  61
            P++P  GGSSL    +   GG+ +D + +N I+EI  +D    V+  +   +L   +   
Sbjct  26   PVLPRGGGSSLLG-GAVQTGGIVLDLSRLNGILEIDPEDGTATVEAGVTLGDLVRALAAK  84

Query  62   GLFFPVDPG--PSAMIGGMIGTNCSGTNAVRYGTMKDWVINLTVVLADGRVMKTR  114
            GL   +DPG      +GG I TN  G  + +YG  +D V+ L VVLADG V++  
Sbjct  85   GLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLTRDNVLGLEVVLADGEVVRLG  139



Lambda      K        H        a         alpha
   0.318    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00021695

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  143     8e-42
CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  99.7    2e-24


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 143 bits (364),  Expect = 8e-42, Method: Composition-based stats.
 Identities = 46/140 (33%), Positives = 74/140 (53%), Gaps = 3/140 (2%)

Query  151  PVAIAYPTCTEDVVKIAKVCHKYRMPMVPYSGGSSLEANFSAPYGGLTIDFAMMNKIIEI  210
            P A+  P   E+V  I ++ ++  +P++P  GGSSL    +   GG+ +D + +N I+EI
Sbjct  1    PAAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLG-GAVQTGGIVLDLSRLNGILEI  59

Query  211  HEDDMDIVVQPSIQWMELNEKIKHTGLFFPVDPG--PSAMIGGMIGTNCSGTNAVRYGTM  268
              +D    V+  +   +L   +   GL   +DPG      +GG I TN  G  + +YG  
Sbjct  60   DPEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLT  119

Query  269  KDWVINLTVVLADGRVMKTR  288
            +D V+ L VVLADG V++  
Sbjct  120  RDNVLGLEVVLADGEVVRLG  139


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 99.7 bits (249),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 3/151 (2%)

Query  324  IPEQTRVGVVAFPTIRDAASTAMQLIRKGIPVQCMEILDDVQMDVINRAGGTGRTW--KT  381
            +PE   V +V FP+   A     ++ R GI    +E++D+  +D++    G  +      
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARAGIIPAALELMDNDALDLVEATLGFPKGLPRDA  60

Query  382  LPTLFFKFSGTKAGVSDS-INLTRELAKSNNAASFEFARDDREAHDLWSARKQSLWSMMS  440
               L  +F G     ++  +     + ++  A     A D+ EA  LW+ARK +L    +
Sbjct  61   AALLLVEFEGDDEETAEEELEAVEAILEAGGAGDVVVATDEAEAERLWAARKYALPLRDA  120

Query  441  LRKEGSEVWSTDVAVPISRLPDIIGRTQARL  471
            L   G  V+S DV+VP SRL D++   +  L
Sbjct  121  LGGAGPAVFSEDVSVPRSRLADLVRDIKELL  151



Lambda      K        H        a         alpha
   0.317    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00021698

Length=577
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  227     3e-71
CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  143     3e-41


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 227 bits (581),  Expect = 3e-71, Method: Composition-based stats.
 Identities = 90/248 (36%), Positives = 135/248 (54%), Gaps = 3/248 (1%)

Query  324  IPEQTRVGVVAFPTIRDAASTAMQLIRKGIPVQCMEILDDVQMDVINRAGGTGRTW--KT  381
            +PE   V +V FP+   A     ++ R GI    +E++D+  +D++    G  +      
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARAGIIPAALELMDNDALDLVEATLGFPKGLPRDA  60

Query  382  LPTLFFKFSGTKAGVSDS-INLTRELAKSNNAASFEFARDDREAHDLWSARKQSLWSMMS  440
               L  +F G     ++  +     + ++  A     A D+ EA  LW+ARK +L    +
Sbjct  61   AALLLVEFEGDDEETAEEELEAVEAILEAGGAGDVVVATDEAEAERLWAARKYALPLRDA  120

Query  441  LRKEGSEVWSTDVAVPISRLPDIIEISKKELDNLGLFASILGHIGDGNFHSSIMYDRKDA  500
            L   G  V+S DV+VP SRL D++   K+ LD  GL   + GH GDGN H  I++D +D 
Sbjct  121  LGGAGPAVFSEDVSVPRSRLADLVRDIKELLDKYGLVVCLFGHAGDGNLHLYILFDFRDP  180

Query  501  DQMERVEKVVHDMVDRALEMEGSCTGEHGVGLGKKASLKKELGPATLDVMRSIKKALDPH  560
            +Q ER EK+  +++D ALE+ GS +GEHGVG  KK  L++E G   L +MR IK A DP 
Sbjct  181  EQEERAEKLFDEIMDLALELGGSISGEHGVGRDKKPYLEREFGEEGLALMRRIKAAFDPK  240

Query  561  WLLNPGKI  568
             +LNPGK+
Sbjct  241  GILNPGKV  248


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 143 bits (364),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 46/140 (33%), Positives = 74/140 (53%), Gaps = 3/140 (2%)

Query  151  PVAIAYPTCTEDVVKIAKVCHKYRMPMVPYSGGSSLEANFSAPYGGLTIDFAMMNKIIEI  210
            P A+  P   E+V  I ++ ++  +P++P  GGSSL    +   GG+ +D + +N I+EI
Sbjct  1    PAAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLG-GAVQTGGIVLDLSRLNGILEI  59

Query  211  HEDDMDIVVQPSIQWMELNEKIKHTGLFFPVDPG--PSAMIGGMIGTNCSGTNAVRYGTM  268
              +D    V+  +   +L   +   GL   +DPG      +GG I TN  G  + +YG  
Sbjct  60   DPEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLT  119

Query  269  KDWVINLTVVLADGRVMKTR  288
            +D V+ L VVLADG V++  
Sbjct  120  RDNVLGLEVVLADGEVVRLG  139



Lambda      K        H        a         alpha
   0.317    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 724797580


Query= TCONS_00021696

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  184     3e-59


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 184 bits (469),  Expect = 3e-59, Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 102/169 (60%), Gaps = 0/169 (0%)

Query  27   INLTRELAKSNNAASFEFARDDREAHDLWSARKQSLWSMMSLRKEGSEVWSTDVAVPISR  86
            +     + ++  A     A D+ EA  LW+ARK +L    +L   G  V+S DV+VP SR
Sbjct  80   LEAVEAILEAGGAGDVVVATDEAEAERLWAARKYALPLRDALGGAGPAVFSEDVSVPRSR  139

Query  87   LPDIIEISKKELDNLGLFASILGHIGDGNFHSSIMYDRKDADQMERVEKVVHDMVDRALE  146
            L D++   K+ LD  GL   + GH GDGN H  I++D +D +Q ER EK+  +++D ALE
Sbjct  140  LADLVRDIKELLDKYGLVVCLFGHAGDGNLHLYILFDFRDPEQEERAEKLFDEIMDLALE  199

Query  147  MEGSCTGEHGVGLGKKASLKKELGPATLDVMRSIKKALDPHWLLNPGKI  195
            + GS +GEHGVG  KK  L++E G   L +MR IK A DP  +LNPGK+
Sbjct  200  LGGSISGEHGVGRDKKPYLEREFGEEGLALMRRIKAAFDPKGILNPGKV  248



Lambda      K        H        a         alpha
   0.316    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00026706

Length=556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  157     5e-45
CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  143     2e-41


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 157 bits (399),  Expect = 5e-45, Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 106/205 (52%), Gaps = 3/205 (1%)

Query  324  IPEQTRVGVVAFPTIRDAASTAMQLIRKGIPVQCMEILDDVQMDVINRAGGTGRTW--KT  381
            +PE   V +V FP+   A     ++ R GI    +E++D+  +D++    G  +      
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARAGIIPAALELMDNDALDLVEATLGFPKGLPRDA  60

Query  382  LPTLFFKFSGTKAGVSDS-INLTRELAKSNNAASFEFARDDREAHDLWSARKQSLWSMMS  440
               L  +F G     ++  +     + ++  A     A D+ EA  LW+ARK +L    +
Sbjct  61   AALLLVEFEGDDEETAEEELEAVEAILEAGGAGDVVVATDEAEAERLWAARKYALPLRDA  120

Query  441  LRKEGSEVWSTDVAVPISRLPDIIEISKKELDNLGLFASILGHIGDGNFHSSIMYDRKDA  500
            L   G  V+S DV+VP SRL D++   K+ LD  GL   + GH GDGN H  I++D +D 
Sbjct  121  LGGAGPAVFSEDVSVPRSRLADLVRDIKELLDKYGLVVCLFGHAGDGNLHLYILFDFRDP  180

Query  501  DQMERVEKVVHDMVDRALEMEGSCT  525
            +Q ER EK+  +++D ALE+ GS +
Sbjct  181  EQEERAEKLFDEIMDLALELGGSIS  205


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 143 bits (364),  Expect = 2e-41, Method: Composition-based stats.
 Identities = 46/140 (33%), Positives = 74/140 (53%), Gaps = 3/140 (2%)

Query  151  PVAIAYPTCTEDVVKIAKVCHKYRMPMVPYSGGSSLEANFSAPYGGLTIDFAMMNKIIEI  210
            P A+  P   E+V  I ++ ++  +P++P  GGSSL    +   GG+ +D + +N I+EI
Sbjct  1    PAAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLG-GAVQTGGIVLDLSRLNGILEI  59

Query  211  HEDDMDIVVQPSIQWMELNEKIKHTGLFFPVDPG--PSAMIGGMIGTNCSGTNAVRYGTM  268
              +D    V+  +   +L   +   GL   +DPG      +GG I TN  G  + +YG  
Sbjct  60   DPEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLT  119

Query  269  KDWVINLTVVLADGRVMKTR  288
            +D V+ L VVLADG V++  
Sbjct  120  RDNVLGLEVVLADGEVVRLG  139



Lambda      K        H        a         alpha
   0.317    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 693414592


Query= TCONS_00026707

Length=577
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  227     3e-71
CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  143     3e-41


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 227 bits (581),  Expect = 3e-71, Method: Composition-based stats.
 Identities = 90/248 (36%), Positives = 135/248 (54%), Gaps = 3/248 (1%)

Query  324  IPEQTRVGVVAFPTIRDAASTAMQLIRKGIPVQCMEILDDVQMDVINRAGGTGRTW--KT  381
            +PE   V +V FP+   A     ++ R GI    +E++D+  +D++    G  +      
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARAGIIPAALELMDNDALDLVEATLGFPKGLPRDA  60

Query  382  LPTLFFKFSGTKAGVSDS-INLTRELAKSNNAASFEFARDDREAHDLWSARKQSLWSMMS  440
               L  +F G     ++  +     + ++  A     A D+ EA  LW+ARK +L    +
Sbjct  61   AALLLVEFEGDDEETAEEELEAVEAILEAGGAGDVVVATDEAEAERLWAARKYALPLRDA  120

Query  441  LRKEGSEVWSTDVAVPISRLPDIIEISKKELDNLGLFASILGHIGDGNFHSSIMYDRKDA  500
            L   G  V+S DV+VP SRL D++   K+ LD  GL   + GH GDGN H  I++D +D 
Sbjct  121  LGGAGPAVFSEDVSVPRSRLADLVRDIKELLDKYGLVVCLFGHAGDGNLHLYILFDFRDP  180

Query  501  DQMERVEKVVHDMVDRALEMEGSCTGEHGVGLGKKASLKKELGPATLDVMRSIKKALDPH  560
            +Q ER EK+  +++D ALE+ GS +GEHGVG  KK  L++E G   L +MR IK A DP 
Sbjct  181  EQEERAEKLFDEIMDLALELGGSISGEHGVGRDKKPYLEREFGEEGLALMRRIKAAFDPK  240

Query  561  WLLNPGKI  568
             +LNPGK+
Sbjct  241  GILNPGKV  248


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 143 bits (364),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 46/140 (33%), Positives = 74/140 (53%), Gaps = 3/140 (2%)

Query  151  PVAIAYPTCTEDVVKIAKVCHKYRMPMVPYSGGSSLEANFSAPYGGLTIDFAMMNKIIEI  210
            P A+  P   E+V  I ++ ++  +P++P  GGSSL    +   GG+ +D + +N I+EI
Sbjct  1    PAAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLG-GAVQTGGIVLDLSRLNGILEI  59

Query  211  HEDDMDIVVQPSIQWMELNEKIKHTGLFFPVDPG--PSAMIGGMIGTNCSGTNAVRYGTM  268
              +D    V+  +   +L   +   GL   +DPG      +GG I TN  G  + +YG  
Sbjct  60   DPEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLT  119

Query  269  KDWVINLTVVLADGRVMKTR  288
            +D V+ L VVLADG V++  
Sbjct  120  RDNVLGLEVVLADGEVVRLG  139



Lambda      K        H        a         alpha
   0.317    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 724797580


Query= TCONS_00021697

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  115     1e-32
CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  98.9    4e-25


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 115 bits (291),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 40/115 (35%), Positives = 61/115 (53%), Gaps = 3/115 (3%)

Query  2    PMVPYSGGSSLEANFSAPYGGLTIDFAMMNKIIEIHEDDMDIVVQPSIQWMELNEKIKHT  61
            P++P  GGSSL    +   GG+ +D + +N I+EI  +D    V+  +   +L   +   
Sbjct  26   PVLPRGGGSSLLG-GAVQTGGIVLDLSRLNGILEIDPEDGTATVEAGVTLGDLVRALAAK  84

Query  62   GLFFPVDPG--PSAMIGGMIGTNCSGTNAVRYGTMKDWVINLTVVLADGRVMKTR  114
            GL   +DPG      +GG I TN  G  + +YG  +D V+ L VVLADG V++  
Sbjct  85   GLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLTRDNVLGLEVVLADGEVVRLG  139


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 98.9 bits (247),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 3/151 (2%)

Query  150  IPEQTRVGVVAFPTIRDAASTAMQLIRKGIPVQCMEILDDVQMDVINRAGGTGRTW--KT  207
            +PE   V +V FP+   A     ++ R GI    +E++D+  +D++    G  +      
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARAGIIPAALELMDNDALDLVEATLGFPKGLPRDA  60

Query  208  LPTLFFKFSGTKAGVSDS-INLTRELAKSNNAASFEFARDDREAHDLWSARKQSLWSMMS  266
               L  +F G     ++  +     + ++  A     A D+ EA  LW+ARK +L    +
Sbjct  61   AALLLVEFEGDDEETAEEELEAVEAILEAGGAGDVVVATDEAEAERLWAARKYALPLRDA  120

Query  267  LRKEGSEVWSTDVAVPISRLPDIIGRTQARL  297
            L   G  V+S DV+VP SRL D++   +  L
Sbjct  121  LGGAGPAVFSEDVSVPRSRLADLVRDIKELL  151



Lambda      K        H        a         alpha
   0.319    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0840    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00021699

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  115     1e-32
CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  98.9    4e-25


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 115 bits (291),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 40/115 (35%), Positives = 61/115 (53%), Gaps = 3/115 (3%)

Query  2    PMVPYSGGSSLEANFSAPYGGLTIDFAMMNKIIEIHEDDMDIVVQPSIQWMELNEKIKHT  61
            P++P  GGSSL    +   GG+ +D + +N I+EI  +D    V+  +   +L   +   
Sbjct  26   PVLPRGGGSSLLG-GAVQTGGIVLDLSRLNGILEIDPEDGTATVEAGVTLGDLVRALAAK  84

Query  62   GLFFPVDPG--PSAMIGGMIGTNCSGTNAVRYGTMKDWVINLTVVLADGRVMKTR  114
            GL   +DPG      +GG I TN  G  + +YG  +D V+ L VVLADG V++  
Sbjct  85   GLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLTRDNVLGLEVVLADGEVVRLG  139


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 98.9 bits (247),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 3/151 (2%)

Query  150  IPEQTRVGVVAFPTIRDAASTAMQLIRKGIPVQCMEILDDVQMDVINRAGGTGRTW--KT  207
            +PE   V +V FP+   A     ++ R GI    +E++D+  +D++    G  +      
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARAGIIPAALELMDNDALDLVEATLGFPKGLPRDA  60

Query  208  LPTLFFKFSGTKAGVSDS-INLTRELAKSNNAASFEFARDDREAHDLWSARKQSLWSMMS  266
               L  +F G     ++  +     + ++  A     A D+ EA  LW+ARK +L    +
Sbjct  61   AALLLVEFEGDDEETAEEELEAVEAILEAGGAGDVVVATDEAEAERLWAARKYALPLRDA  120

Query  267  LRKEGSEVWSTDVAVPISRLPDIIGRTQARL  297
            L   G  V+S DV+VP SRL D++   +  L
Sbjct  121  LGGAGPAVFSEDVSVPRSRLADLVRDIKELL  151



Lambda      K        H        a         alpha
   0.319    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00021700

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426059 pfam01118, Semialdhyde_dh, Semialdehyde dehydrogenase,...  132     1e-38
CDD:397067 pfam02774, Semialdhyde_dhC, Semialdehyde dehydrogenase...  129     7e-37


>CDD:426059 pfam01118, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD binding 
domain.  This Pfam entry contains the following members: 
N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde 
dehydrogenase.
Length=121

 Score = 132 bits (335),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 43/127 (34%), Positives = 64/127 (50%), Gaps = 6/127 (5%)

Query  8    KCGVLGATGSVGQRFILLLADHPFLELHAIGASNRSAGKKYKDAVRWKQTTAMSERLSNL  67
            K  ++GATG VGQ  + LL +HP +EL  + AS+RSAGKK            + E   +L
Sbjct  1    KVAIVGATGYVGQELLRLLEEHPPVELVVLFASSRSAGKKLAFVHP------ILEGGKDL  54

Query  68   VLRDCRADQFSDCDLVFSGLNSDVAGEIEMEFIKAEIPVFSNAKNYRKHPLVPLVVPTVN  127
            V+ D   + F D D+VF  L   V+ EI  +  +A   V   + ++R    VP  +P VN
Sbjct  55   VVEDVDPEDFKDVDIVFFALPGGVSKEIAPKLAEAGAKVIDLSSDFRMDDDVPYGLPEVN  114

Query  128  PQHLDLI  134
             + +   
Sbjct  115  REAIKQA  121


>CDD:397067 pfam02774, Semialdhyde_dhC, Semialdehyde dehydrogenase, dimerization 
domain.  This Pfam entry contains the following members: 
N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde 
dehydrogenase.
Length=167

 Score = 129 bits (326),  Expect = 7e-37, Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 80/184 (43%), Gaps = 21/184 (11%)

Query  164  AALQAKFGPVEEVEVFTEQAVSGAGY---PGVPSMDIMDNVIPYISGEEDKLENEAQKIL  220
              L+   G +E V V T QAVSGAG    PGV    I DN+IPYI GEE     E ++ L
Sbjct  2    KPLRDALGGLERVIVDTYQAVSGAGKKAKPGVFGAPIADNLIPYIDGEEHNGTPETREEL  61

Query  221  GSLNADATAFDEQKGLTVGATCTRVGVTDGHMAFVSLRFKNRPGPSAEEVKQAMREYQSE  280
              +N             V ATC RV V  GH   V+++ K +P    EEV +A       
Sbjct  62   KMVNETKKILGFTP--KVSATCVRVPVFRGHSETVTVKLKLKPID-VEEVYEAFY-----  113

Query  281  AQKLGCPSAPREAIKVFDEPDRPQPRLDRDISKGYTVSVGRVREAAPGSYFDLRFAALSH  340
                   +AP   + V  E D P PR  R       V VGRVR+   G    L+  ++  
Sbjct  114  -------AAPGVFVVVRPEEDYPTPRAVRG--GTNFVYVGRVRKDPDGDRG-LKLVSVID  163

Query  341  NTVI  344
            N   
Sbjct  164  NLRK  167



Lambda      K        H        a         alpha
   0.318    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00026708

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426059 pfam01118, Semialdhyde_dh, Semialdehyde dehydrogenase,...  132     1e-38
CDD:397067 pfam02774, Semialdhyde_dhC, Semialdehyde dehydrogenase...  129     7e-37


>CDD:426059 pfam01118, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD binding 
domain.  This Pfam entry contains the following members: 
N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde 
dehydrogenase.
Length=121

 Score = 132 bits (335),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 43/127 (34%), Positives = 64/127 (50%), Gaps = 6/127 (5%)

Query  8    KCGVLGATGSVGQRFILLLADHPFLELHAIGASNRSAGKKYKDAVRWKQTTAMSERLSNL  67
            K  ++GATG VGQ  + LL +HP +EL  + AS+RSAGKK            + E   +L
Sbjct  1    KVAIVGATGYVGQELLRLLEEHPPVELVVLFASSRSAGKKLAFVHP------ILEGGKDL  54

Query  68   VLRDCRADQFSDCDLVFSGLNSDVAGEIEMEFIKAEIPVFSNAKNYRKHPLVPLVVPTVN  127
            V+ D   + F D D+VF  L   V+ EI  +  +A   V   + ++R    VP  +P VN
Sbjct  55   VVEDVDPEDFKDVDIVFFALPGGVSKEIAPKLAEAGAKVIDLSSDFRMDDDVPYGLPEVN  114

Query  128  PQHLDLI  134
             + +   
Sbjct  115  REAIKQA  121


>CDD:397067 pfam02774, Semialdhyde_dhC, Semialdehyde dehydrogenase, dimerization 
domain.  This Pfam entry contains the following members: 
N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde 
dehydrogenase.
Length=167

 Score = 129 bits (326),  Expect = 7e-37, Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 80/184 (43%), Gaps = 21/184 (11%)

Query  164  AALQAKFGPVEEVEVFTEQAVSGAGY---PGVPSMDIMDNVIPYISGEEDKLENEAQKIL  220
              L+   G +E V V T QAVSGAG    PGV    I DN+IPYI GEE     E ++ L
Sbjct  2    KPLRDALGGLERVIVDTYQAVSGAGKKAKPGVFGAPIADNLIPYIDGEEHNGTPETREEL  61

Query  221  GSLNADATAFDEQKGLTVGATCTRVGVTDGHMAFVSLRFKNRPGPSAEEVKQAMREYQSE  280
              +N             V ATC RV V  GH   V+++ K +P    EEV +A       
Sbjct  62   KMVNETKKILGFTP--KVSATCVRVPVFRGHSETVTVKLKLKPID-VEEVYEAFY-----  113

Query  281  AQKLGCPSAPREAIKVFDEPDRPQPRLDRDISKGYTVSVGRVREAAPGSYFDLRFAALSH  340
                   +AP   + V  E D P PR  R       V VGRVR+   G    L+  ++  
Sbjct  114  -------AAPGVFVVVRPEEDYPTPRAVRG--GTNFVYVGRVRKDPDGDRG-LKLVSVID  163

Query  341  NTVI  344
            N   
Sbjct  164  NLRK  167



Lambda      K        H        a         alpha
   0.318    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00021701

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426059 pfam01118, Semialdhyde_dh, Semialdehyde dehydrogenase,...  132     1e-38
CDD:397067 pfam02774, Semialdhyde_dhC, Semialdehyde dehydrogenase...  129     7e-37


>CDD:426059 pfam01118, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD binding 
domain.  This Pfam entry contains the following members: 
N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde 
dehydrogenase.
Length=121

 Score = 132 bits (335),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 43/127 (34%), Positives = 64/127 (50%), Gaps = 6/127 (5%)

Query  8    KCGVLGATGSVGQRFILLLADHPFLELHAIGASNRSAGKKYKDAVRWKQTTAMSERLSNL  67
            K  ++GATG VGQ  + LL +HP +EL  + AS+RSAGKK            + E   +L
Sbjct  1    KVAIVGATGYVGQELLRLLEEHPPVELVVLFASSRSAGKKLAFVHP------ILEGGKDL  54

Query  68   VLRDCRADQFSDCDLVFSGLNSDVAGEIEMEFIKAEIPVFSNAKNYRKHPLVPLVVPTVN  127
            V+ D   + F D D+VF  L   V+ EI  +  +A   V   + ++R    VP  +P VN
Sbjct  55   VVEDVDPEDFKDVDIVFFALPGGVSKEIAPKLAEAGAKVIDLSSDFRMDDDVPYGLPEVN  114

Query  128  PQHLDLI  134
             + +   
Sbjct  115  REAIKQA  121


>CDD:397067 pfam02774, Semialdhyde_dhC, Semialdehyde dehydrogenase, dimerization 
domain.  This Pfam entry contains the following members: 
N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde 
dehydrogenase.
Length=167

 Score = 129 bits (326),  Expect = 7e-37, Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 80/184 (43%), Gaps = 21/184 (11%)

Query  164  AALQAKFGPVEEVEVFTEQAVSGAGY---PGVPSMDIMDNVIPYISGEEDKLENEAQKIL  220
              L+   G +E V V T QAVSGAG    PGV    I DN+IPYI GEE     E ++ L
Sbjct  2    KPLRDALGGLERVIVDTYQAVSGAGKKAKPGVFGAPIADNLIPYIDGEEHNGTPETREEL  61

Query  221  GSLNADATAFDEQKGLTVGATCTRVGVTDGHMAFVSLRFKNRPGPSAEEVKQAMREYQSE  280
              +N             V ATC RV V  GH   V+++ K +P    EEV +A       
Sbjct  62   KMVNETKKILGFTP--KVSATCVRVPVFRGHSETVTVKLKLKPID-VEEVYEAFY-----  113

Query  281  AQKLGCPSAPREAIKVFDEPDRPQPRLDRDISKGYTVSVGRVREAAPGSYFDLRFAALSH  340
                   +AP   + V  E D P PR  R       V VGRVR+   G    L+  ++  
Sbjct  114  -------AAPGVFVVVRPEEDYPTPRAVRG--GTNFVYVGRVRKDPDGDRG-LKLVSVID  163

Query  341  NTVI  344
            N   
Sbjct  164  NLRK  167



Lambda      K        H        a         alpha
   0.318    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00026709

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397067 pfam02774, Semialdhyde_dhC, Semialdehyde dehydrogenase...  126     6e-37


>CDD:397067 pfam02774, Semialdhyde_dhC, Semialdehyde dehydrogenase, dimerization 
domain.  This Pfam entry contains the following members: 
N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde 
dehydrogenase.
Length=167

 Score = 126 bits (319),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 80/184 (43%), Gaps = 21/184 (11%)

Query  68   AALQAKFGPVEEVEVFTEQAVSGAGY---PGVPSMDIMDNVIPYISGEEDKLENEAQKIL  124
              L+   G +E V V T QAVSGAG    PGV    I DN+IPYI GEE     E ++ L
Sbjct  2    KPLRDALGGLERVIVDTYQAVSGAGKKAKPGVFGAPIADNLIPYIDGEEHNGTPETREEL  61

Query  125  GSLNADATAFDEQKGLTVGATCTRVGVTDGHMAFVSLRFKNRPGPSAEEVKQAMREYQSE  184
              +N             V ATC RV V  GH   V+++ K +P    EEV +A       
Sbjct  62   KMVNETKKILGFTP--KVSATCVRVPVFRGHSETVTVKLKLKPID-VEEVYEAFY-----  113

Query  185  AQKLGCPSAPREAIKVFDEPDRPQPRLDRDISKGYTVSVGRVREAAPGSYFDLRFAALSH  244
                   +AP   + V  E D P PR  R       V VGRVR+   G    L+  ++  
Sbjct  114  -------AAPGVFVVVRPEEDYPTPRAVRG--GTNFVYVGRVRKDPDGDRG-LKLVSVID  163

Query  245  NTVI  248
            N   
Sbjct  164  NLRK  167



Lambda      K        H        a         alpha
   0.317    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00021702

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459988 pfam00900, Ribosomal_S4e, Ribosomal family S4e             140     2e-43
CDD:465028 pfam16121, 40S_S4_C, 40S ribosomal protein S4 C-termin...  91.1    1e-24
CDD:429817 pfam08071, RS4NT, RS4NT (NUC023) domain. This is the N...  74.1    2e-18


>CDD:459988 pfam00900, Ribosomal_S4e, Ribosomal family S4e.  
Length=75

 Score = 140 bits (355),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 47/75 (63%), Positives = 55/75 (73%), Gaps = 0/75 (0%)

Query  95   TGENFRLIYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAI  154
            TGE +R++YDTKGRF +H I  EEA+YKLCKV+     KGG P L  HD R I YPDP I
Sbjct  1    TGEYYRVLYDTKGRFVLHPISEEEAKYKLCKVRNKTTVKGGKPQLNLHDGRNILYPDPLI  60

Query  155  KVNDTVKVDIATGKI  169
            K NDTVK+D+ TGKI
Sbjct  61   KTNDTVKIDLPTGKI  75


>CDD:465028 pfam16121, 40S_S4_C, 40S ribosomal protein S4 C-terminus.  This 
domain is found at the C-terminus of 40S ribosomal protein 
S4.
Length=48

 Score = 91.1 bits (227),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 35/48 (73%), Positives = 41/48 (85%), Gaps = 1/48 (2%)

Query  212  DAIDNSFATRESNVFVIGQE-KPWISLPKGKGVKLTIAEERDRRRAYA  258
            DA+ ++FATR SNVFVIG+  KPWISLPKGKG+KLTIAEERD+R A  
Sbjct  1    DALGHTFATRLSNVFVIGKGNKPWISLPKGKGIKLTIAEERDKRLAAK  48


>CDD:429817 pfam08071, RS4NT, RS4NT (NUC023) domain.  This is the N-terminal 
domain of Ribosomal S4 / S4e proteins. This domain is associated 
with S4 and KOW domains.
Length=37

 Score = 74.1 bits (183),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 28/37 (76%), Positives = 31/37 (84%), Gaps = 0/37 (0%)

Query  3   RGPKKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLR  39
           RGPKKH KRL+AP HW+LDK  G +APK SPGPHKLR
Sbjct  1   RGPKKHLKRLAAPKHWMLDKKGGVFAPKPSPGPHKLR  37



Lambda      K        H        a         alpha
   0.322    0.140    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00021703

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459988 pfam00900, Ribosomal_S4e, Ribosomal family S4e             140     2e-43
CDD:465028 pfam16121, 40S_S4_C, 40S ribosomal protein S4 C-termin...  81.8    3e-21
CDD:429817 pfam08071, RS4NT, RS4NT (NUC023) domain. This is the N...  74.1    3e-18


>CDD:459988 pfam00900, Ribosomal_S4e, Ribosomal family S4e.  
Length=75

 Score = 140 bits (355),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 47/75 (63%), Positives = 55/75 (73%), Gaps = 0/75 (0%)

Query  95   TGENFRLIYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAI  154
            TGE +R++YDTKGRF +H I  EEA+YKLCKV+     KGG P L  HD R I YPDP I
Sbjct  1    TGEYYRVLYDTKGRFVLHPISEEEAKYKLCKVRNKTTVKGGKPQLNLHDGRNILYPDPLI  60

Query  155  KVNDTVKVDIATGKI  169
            K NDTVK+D+ TGKI
Sbjct  61   KTNDTVKIDLPTGKI  75


>CDD:465028 pfam16121, 40S_S4_C, 40S ribosomal protein S4 C-terminus.  This 
domain is found at the C-terminus of 40S ribosomal protein 
S4.
Length=48

 Score = 81.8 bits (203),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 32/48 (67%), Positives = 39/48 (81%), Gaps = 1/48 (2%)

Query  212  DAIDNSFATRESNVFVIGQE-KPWISLPKGKGVKVRNAEERDRRRAYA  258
            DA+ ++FATR SNVFVIG+  KPWISLPKGKG+K+  AEERD+R A  
Sbjct  1    DALGHTFATRLSNVFVIGKGNKPWISLPKGKGIKLTIAEERDKRLAAK  48


>CDD:429817 pfam08071, RS4NT, RS4NT (NUC023) domain.  This is the N-terminal 
domain of Ribosomal S4 / S4e proteins. This domain is associated 
with S4 and KOW domains.
Length=37

 Score = 74.1 bits (183),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 28/37 (76%), Positives = 31/37 (84%), Gaps = 0/37 (0%)

Query  3   RGPKKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLR  39
           RGPKKH KRL+AP HW+LDK  G +APK SPGPHKLR
Sbjct  1   RGPKKHLKRLAAPKHWMLDKKGGVFAPKPSPGPHKLR  37



Lambda      K        H        a         alpha
   0.322    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00026711

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459988 pfam00900, Ribosomal_S4e, Ribosomal family S4e             137     1e-42
CDD:429817 pfam08071, RS4NT, RS4NT (NUC023) domain. This is the N...  73.4    5e-18
CDD:465028 pfam16121, 40S_S4_C, 40S ribosomal protein S4 C-termin...  66.8    2e-15


>CDD:459988 pfam00900, Ribosomal_S4e, Ribosomal family S4e.  
Length=75

 Score = 137 bits (349),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 47/75 (63%), Positives = 55/75 (73%), Gaps = 0/75 (0%)

Query  95   TGENFRLIYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAI  154
            TGE +R++YDTKGRF +H I  EEA+YKLCKV+     KGG P L  HD R I YPDP I
Sbjct  1    TGEYYRVLYDTKGRFVLHPISEEEAKYKLCKVRNKTTVKGGKPQLNLHDGRNILYPDPLI  60

Query  155  KVNDTVKVDIATGKI  169
            K NDTVK+D+ TGKI
Sbjct  61   KTNDTVKIDLPTGKI  75


>CDD:429817 pfam08071, RS4NT, RS4NT (NUC023) domain.  This is the N-terminal 
domain of Ribosomal S4 / S4e proteins. This domain is associated 
with S4 and KOW domains.
Length=37

 Score = 73.4 bits (181),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 28/37 (76%), Positives = 31/37 (84%), Gaps = 0/37 (0%)

Query  3   RGPKKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLR  39
           RGPKKH KRL+AP HW+LDK  G +APK SPGPHKLR
Sbjct  1   RGPKKHLKRLAAPKHWMLDKKGGVFAPKPSPGPHKLR  37


>CDD:465028 pfam16121, 40S_S4_C, 40S ribosomal protein S4 C-terminus.  This 
domain is found at the C-terminus of 40S ribosomal protein 
S4.
Length=48

 Score = 66.8 bits (164),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 25/34 (74%), Positives = 30/34 (88%), Gaps = 1/34 (3%)

Query  212  DAIDNSFATRESNVFVIGQE-KPWISLPKGKGVK  244
            DA+ ++FATR SNVFVIG+  KPWISLPKGKG+K
Sbjct  1    DALGHTFATRLSNVFVIGKGNKPWISLPKGKGIK  34



Lambda      K        H        a         alpha
   0.322    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00021704

Length=80
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465028 pfam16121, 40S_S4_C, 40S ribosomal protein S4 C-termin...  88.4    5e-26


>CDD:465028 pfam16121, 40S_S4_C, 40S ribosomal protein S4 C-terminus.  This 
domain is found at the C-terminus of 40S ribosomal protein 
S4.
Length=48

 Score = 88.4 bits (220),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 35/48 (73%), Positives = 41/48 (85%), Gaps = 1/48 (2%)

Query  31  DAIDNSFATRESNVFVIGQE-KPWISLPKGKGVKLTIAEERDRRRAYA  77
           DA+ ++FATR SNVFVIG+  KPWISLPKGKG+KLTIAEERD+R A  
Sbjct  1   DALGHTFATRLSNVFVIGKGNKPWISLPKGKGIKLTIAEERDKRLAAK  48



Lambda      K        H        a         alpha
   0.321    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00021705

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459988 pfam00900, Ribosomal_S4e, Ribosomal family S4e             139     2e-43
CDD:465028 pfam16121, 40S_S4_C, 40S ribosomal protein S4 C-termin...  91.1    7e-25


>CDD:459988 pfam00900, Ribosomal_S4e, Ribosomal family S4e.  
Length=75

 Score = 139 bits (353),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 47/75 (63%), Positives = 55/75 (73%), Gaps = 0/75 (0%)

Query  73   TGENFRLIYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAI  132
            TGE +R++YDTKGRF +H I  EEA+YKLCKV+     KGG P L  HD R I YPDP I
Sbjct  1    TGEYYRVLYDTKGRFVLHPISEEEAKYKLCKVRNKTTVKGGKPQLNLHDGRNILYPDPLI  60

Query  133  KVNDTVKVDIATGKI  147
            K NDTVK+D+ TGKI
Sbjct  61   KTNDTVKIDLPTGKI  75


>CDD:465028 pfam16121, 40S_S4_C, 40S ribosomal protein S4 C-terminus.  This 
domain is found at the C-terminus of 40S ribosomal protein 
S4.
Length=48

 Score = 91.1 bits (227),  Expect = 7e-25, Method: Composition-based stats.
 Identities = 35/48 (73%), Positives = 41/48 (85%), Gaps = 1/48 (2%)

Query  190  DAIDNSFATRESNVFVIGQE-KPWISLPKGKGVKLTIAEERDRRRAYA  236
            DA+ ++FATR SNVFVIG+  KPWISLPKGKG+KLTIAEERD+R A  
Sbjct  1    DALGHTFATRLSNVFVIGKGNKPWISLPKGKGIKLTIAEERDKRLAAK  48



Lambda      K        H        a         alpha
   0.323    0.140    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00021706

Length=124
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459988 pfam00900, Ribosomal_S4e, Ribosomal family S4e             97.9    1e-28


>CDD:459988 pfam00900, Ribosomal_S4e, Ribosomal family S4e.  
Length=75

 Score = 97.9 bits (245),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 30/52 (58%), Positives = 36/52 (69%), Gaps = 0/52 (0%)

Query  73   TGENFRLIYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART  124
            TGE +R++YDTKGRF +H I  EEA+YKLCKV+     KGG P L  HD R 
Sbjct  1    TGEYYRVLYDTKGRFVLHPISEEEAKYKLCKVRNKTTVKGGKPQLNLHDGRN  52



Lambda      K        H        a         alpha
   0.323    0.140    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00026712

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459988 pfam00900, Ribosomal_S4e, Ribosomal family S4e             139     2e-43
CDD:465028 pfam16121, 40S_S4_C, 40S ribosomal protein S4 C-termin...  91.1    7e-25


>CDD:459988 pfam00900, Ribosomal_S4e, Ribosomal family S4e.  
Length=75

 Score = 139 bits (353),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 47/75 (63%), Positives = 55/75 (73%), Gaps = 0/75 (0%)

Query  73   TGENFRLIYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAI  132
            TGE +R++YDTKGRF +H I  EEA+YKLCKV+     KGG P L  HD R I YPDP I
Sbjct  1    TGEYYRVLYDTKGRFVLHPISEEEAKYKLCKVRNKTTVKGGKPQLNLHDGRNILYPDPLI  60

Query  133  KVNDTVKVDIATGKI  147
            K NDTVK+D+ TGKI
Sbjct  61   KTNDTVKIDLPTGKI  75


>CDD:465028 pfam16121, 40S_S4_C, 40S ribosomal protein S4 C-terminus.  This 
domain is found at the C-terminus of 40S ribosomal protein 
S4.
Length=48

 Score = 91.1 bits (227),  Expect = 7e-25, Method: Composition-based stats.
 Identities = 35/48 (73%), Positives = 41/48 (85%), Gaps = 1/48 (2%)

Query  190  DAIDNSFATRESNVFVIGQE-KPWISLPKGKGVKLTIAEERDRRRAYA  236
            DA+ ++FATR SNVFVIG+  KPWISLPKGKG+KLTIAEERD+R A  
Sbjct  1    DALGHTFATRLSNVFVIGKGNKPWISLPKGKGIKLTIAEERDKRLAAK  48



Lambda      K        H        a         alpha
   0.323    0.140    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00026713

Length=80
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465028 pfam16121, 40S_S4_C, 40S ribosomal protein S4 C-termin...  88.4    5e-26


>CDD:465028 pfam16121, 40S_S4_C, 40S ribosomal protein S4 C-terminus.  This 
domain is found at the C-terminus of 40S ribosomal protein 
S4.
Length=48

 Score = 88.4 bits (220),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 35/48 (73%), Positives = 41/48 (85%), Gaps = 1/48 (2%)

Query  31  DAIDNSFATRESNVFVIGQE-KPWISLPKGKGVKLTIAEERDRRRAYA  77
           DA+ ++FATR SNVFVIG+  KPWISLPKGKG+KLTIAEERD+R A  
Sbjct  1   DALGHTFATRLSNVFVIGKGNKPWISLPKGKGIKLTIAEERDKRLAAK  48



Lambda      K        H        a         alpha
   0.321    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00021707

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00021708

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00026714

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00021709

Length=296


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00026716

Length=495


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00021712

Length=495


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00021715

Length=662


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 839155510


Query= TCONS_00021714

Length=662


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 839155510


Query= TCONS_00021713

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.126    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00021718

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.147    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00021717

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.147    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00026717

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.147    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00021719

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.149    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00021720

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00021716

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.149    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00021721

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.147    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00026718

Length=509


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 632879588


Query= TCONS_00026719

Length=509


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 632879588


Query= TCONS_00026720

Length=717
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  87.7    1e-20


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 87.7 bits (218),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 39/159 (25%), Positives = 61/159 (38%), Gaps = 17/159 (11%)

Query  210  QKDVLDELDKNHSVFVVAPTSAGKTFISFYAMSKVLQEDDTGVLV-YVAPTKALVNQIGA  268
            Q + +  + +   V V APT +GKT        + L + D G     +APT+ L  Q   
Sbjct  4    QAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQ---  60

Query  269  EIHARFRKRYSGPEQTVWAIATRDVRINDPAVFK----------MLLSSANATTWAPRVK  318
             I+   +K   G    V ++   D R       K           LL           +K
Sbjct  61   -IYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQERKLLKNLK  119

Query  319  CIIFDEIHSIGHTDDGLVWEQLL--LLAPCRIIALSATV  355
             ++ DE H +     G   E++L  L    +I+ LSAT+
Sbjct  120  LLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATL  158



Lambda      K        H        a         alpha
   0.320    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906559696


Query= TCONS_00021722

Length=624
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  68.0    6e-14


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 68.0 bits (167),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query  509  QKDVLDELDKNHSVFVVAPTSAGKTFISFYAMSKVLQEDDTGVLV-YVAPTKALVNQIGA  567
            Q + +  + +   V V APT +GKT        + L + D G     +APT+ L  Q   
Sbjct  4    QAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQ---  60

Query  568  EIHARFRKRYSGPEQTVWAI---ATRDVRINDPLKCQILVTVPHFLQ  611
             I+   +K   G    V ++    +R  ++       ILV  P  L 
Sbjct  61   -IYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLL  106



Lambda      K        H        a         alpha
   0.319    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 795035696


Query= TCONS_00021723

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00021724

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459696 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-ter...  58.7    4e-12


>CDD:459696 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-terminal domain. 
 This family includes small ribosomal subunit S9 from 
prokaryotes and S16 from metazoans. This domain is predicted 
to bind to ribosomal RNA. This domain is composed of four 
helices in the known structure. However the domain is discontinuous 
in sequence and the alignment for this family contains 
only the first three helices.
Length=96

 Score = 58.7 bits (143),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 38/96 (40%), Gaps = 13/96 (14%)

Query  57   RLLQDLQGPSSSDSELKIVGEYGLRNKREVWRVQLTLSKIRRAARELLTLDEKDPKRLFE  116
            R+   L        ELK+      +N+RE  +      KIR+ +  LL L EK   R   
Sbjct  12   RVGFKLWKKGRCHRELKVA-----QNRREYPKYPGQHGKIRKLSEYLLQLREKQKVRRKY  66

Query  117  G--NALIRRLVRIGVLDESRMKLDYVLALRVEDFLE  150
            G     +R+L  +G      +KL  V    +   LE
Sbjct  67   GLLEKQLRKLYDMG------LKLKGVTGENLLQLLE  96



Lambda      K        H        a         alpha
   0.318    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00021725

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00021726

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00021727

Length=422


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00021729

Length=422


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0735    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00021728

Length=340


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00026721

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430285 pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family....  187     1e-62


>CDD:430285 pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family.  This 
family of proteins are related to a DOPA 4,5-dioxygenase that 
is involved in synthesis of betalain. DOPA-dioxygenase is 
the key enzyme involved in betalain biosynthesis. It converts 
3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore.
Length=105

 Score = 187 bits (478),  Expect = 1e-62, Method: Composition-based stats.
 Identities = 76/108 (70%), Positives = 87/108 (81%), Gaps = 3/108 (3%)

Query  60   FDIHIYHFQNNPDQVAYARALHERIRREFPELRIYTFFDRPVGPHPVAMFEVNVFTPAQF  119
            +  HIY FQN+P +V YARAL ERIRREFPELR+  F D+P+GPHPVAMFEVN FTP QF
Sbjct  1    YHAHIYFFQNDPAEVEYARALRERIRREFPELRVGRFHDKPIGPHPVAMFEVN-FTPEQF  59

Query  120  GAFVPWLVINRGPLSVLIHPNTVDSEEERNHTQRATWLGERIPLDLRV  167
            GA VPWL +NRGPLSVLIHPNT   ++ R+HT RA WLGE +PLDL V
Sbjct  60   GAVVPWLALNRGPLSVLIHPNT--GDDLRDHTDRALWLGEPLPLDLSV  105



Lambda      K        H        a         alpha
   0.320    0.139    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00021731

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430285 pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family....  187     1e-62


>CDD:430285 pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family.  This 
family of proteins are related to a DOPA 4,5-dioxygenase that 
is involved in synthesis of betalain. DOPA-dioxygenase is 
the key enzyme involved in betalain biosynthesis. It converts 
3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore.
Length=105

 Score = 187 bits (478),  Expect = 1e-62, Method: Composition-based stats.
 Identities = 76/108 (70%), Positives = 87/108 (81%), Gaps = 3/108 (3%)

Query  60   FDIHIYHFQNNPDQVAYARALHERIRREFPELRIYTFFDRPVGPHPVAMFEVNVFTPAQF  119
            +  HIY FQN+P +V YARAL ERIRREFPELR+  F D+P+GPHPVAMFEVN FTP QF
Sbjct  1    YHAHIYFFQNDPAEVEYARALRERIRREFPELRVGRFHDKPIGPHPVAMFEVN-FTPEQF  59

Query  120  GAFVPWLVINRGPLSVLIHPNTVDSEEERNHTQRATWLGERIPLDLRV  167
            GA VPWL +NRGPLSVLIHPNT   ++ R+HT RA WLGE +PLDL V
Sbjct  60   GAVVPWLALNRGPLSVLIHPNT--GDDLRDHTDRALWLGEPLPLDLSV  105



Lambda      K        H        a         alpha
   0.320    0.139    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00021730

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430285 pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family....  187     1e-62


>CDD:430285 pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family.  This 
family of proteins are related to a DOPA 4,5-dioxygenase that 
is involved in synthesis of betalain. DOPA-dioxygenase is 
the key enzyme involved in betalain biosynthesis. It converts 
3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore.
Length=105

 Score = 187 bits (478),  Expect = 1e-62, Method: Composition-based stats.
 Identities = 76/108 (70%), Positives = 87/108 (81%), Gaps = 3/108 (3%)

Query  60   FDIHIYHFQNNPDQVAYARALHERIRREFPELRIYTFFDRPVGPHPVAMFEVNVFTPAQF  119
            +  HIY FQN+P +V YARAL ERIRREFPELR+  F D+P+GPHPVAMFEVN FTP QF
Sbjct  1    YHAHIYFFQNDPAEVEYARALRERIRREFPELRVGRFHDKPIGPHPVAMFEVN-FTPEQF  59

Query  120  GAFVPWLVINRGPLSVLIHPNTVDSEEERNHTQRATWLGERIPLDLRV  167
            GA VPWL +NRGPLSVLIHPNT   ++ R+HT RA WLGE +PLDL V
Sbjct  60   GAVVPWLALNRGPLSVLIHPNT--GDDLRDHTDRALWLGEPLPLDLSV  105



Lambda      K        H        a         alpha
   0.320    0.139    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00021732

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430285 pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family....   99     7e-30


>CDD:430285 pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family.  This 
family of proteins are related to a DOPA 4,5-dioxygenase that 
is involved in synthesis of betalain. DOPA-dioxygenase is 
the key enzyme involved in betalain biosynthesis. It converts 
3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore.
Length=105

 Score =  99 bits (250),  Expect = 7e-30, Method: Composition-based stats.
 Identities = 43/60 (72%), Positives = 48/60 (80%), Gaps = 3/60 (5%)

Query  1    MFEVNVFTPAQFGAFVPWLVINRGPLSVLIHPNTVDSEEERNHTQRATWLGERIPLDLRV  60
            MFEVN FTP QFGA VPWL +NRGPLSVLIHPNT   ++ R+HT RA WLGE +PLDL V
Sbjct  49   MFEVN-FTPEQFGAVVPWLALNRGPLSVLIHPNT--GDDLRDHTDRALWLGEPLPLDLSV  105



Lambda      K        H        a         alpha
   0.319    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00026722

Length=134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430285 pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family....  104     8e-31


>CDD:430285 pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family.  This 
family of proteins are related to a DOPA 4,5-dioxygenase that 
is involved in synthesis of betalain. DOPA-dioxygenase is 
the key enzyme involved in betalain biosynthesis. It converts 
3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore.
Length=105

 Score = 104 bits (262),  Expect = 8e-31, Method: Composition-based stats.
 Identities = 40/57 (70%), Positives = 46/57 (81%), Gaps = 0/57 (0%)

Query  60   FDIHIYHFQNNPDQVAYARALHERIRREFPELRIYTFFDRPVGPHPVAMFEVNGTVE  116
            +  HIY FQN+P +V YARAL ERIRREFPELR+  F D+P+GPHPVAMFEVN T E
Sbjct  1    YHAHIYFFQNDPAEVEYARALRERIRREFPELRVGRFHDKPIGPHPVAMFEVNFTPE  57



Lambda      K        H        a         alpha
   0.320    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00026723

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430285 pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family....  187     1e-62


>CDD:430285 pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family.  This 
family of proteins are related to a DOPA 4,5-dioxygenase that 
is involved in synthesis of betalain. DOPA-dioxygenase is 
the key enzyme involved in betalain biosynthesis. It converts 
3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore.
Length=105

 Score = 187 bits (478),  Expect = 1e-62, Method: Composition-based stats.
 Identities = 76/108 (70%), Positives = 87/108 (81%), Gaps = 3/108 (3%)

Query  60   FDIHIYHFQNNPDQVAYARALHERIRREFPELRIYTFFDRPVGPHPVAMFEVNVFTPAQF  119
            +  HIY FQN+P +V YARAL ERIRREFPELR+  F D+P+GPHPVAMFEVN FTP QF
Sbjct  1    YHAHIYFFQNDPAEVEYARALRERIRREFPELRVGRFHDKPIGPHPVAMFEVN-FTPEQF  59

Query  120  GAFVPWLVINRGPLSVLIHPNTVDSEEERNHTQRATWLGERIPLDLRV  167
            GA VPWL +NRGPLSVLIHPNT   ++ R+HT RA WLGE +PLDL V
Sbjct  60   GAVVPWLALNRGPLSVLIHPNT--GDDLRDHTDRALWLGEPLPLDLSV  105



Lambda      K        H        a         alpha
   0.320    0.139    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00021733

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00026724

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430285 pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family....   99     7e-30


>CDD:430285 pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family.  This 
family of proteins are related to a DOPA 4,5-dioxygenase that 
is involved in synthesis of betalain. DOPA-dioxygenase is 
the key enzyme involved in betalain biosynthesis. It converts 
3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore.
Length=105

 Score =  99 bits (250),  Expect = 7e-30, Method: Composition-based stats.
 Identities = 43/60 (72%), Positives = 48/60 (80%), Gaps = 3/60 (5%)

Query  1    MFEVNVFTPAQFGAFVPWLVINRGPLSVLIHPNTVDSEEERNHTQRATWLGERIPLDLRV  60
            MFEVN FTP QFGA VPWL +NRGPLSVLIHPNT   ++ R+HT RA WLGE +PLDL V
Sbjct  49   MFEVN-FTPEQFGAVVPWLALNRGPLSVLIHPNT--GDDLRDHTDRALWLGEPLPLDLSV  105



Lambda      K        H        a         alpha
   0.319    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00021734

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430285 pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family....   99     7e-30


>CDD:430285 pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family.  This 
family of proteins are related to a DOPA 4,5-dioxygenase that 
is involved in synthesis of betalain. DOPA-dioxygenase is 
the key enzyme involved in betalain biosynthesis. It converts 
3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore.
Length=105

 Score =  99 bits (250),  Expect = 7e-30, Method: Composition-based stats.
 Identities = 43/60 (72%), Positives = 48/60 (80%), Gaps = 3/60 (5%)

Query  1    MFEVNVFTPAQFGAFVPWLVINRGPLSVLIHPNTVDSEEERNHTQRATWLGERIPLDLRV  60
            MFEVN FTP QFGA VPWL +NRGPLSVLIHPNT   ++ R+HT RA WLGE +PLDL V
Sbjct  49   MFEVN-FTPEQFGAVVPWLALNRGPLSVLIHPNT--GDDLRDHTDRALWLGEPLPLDLSV  105



Lambda      K        H        a         alpha
   0.319    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00026725

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00026727

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00026726

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00021736

Length=342


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00026728

Length=342


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00021737

Length=342


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00026729

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00021738

Length=290


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00026730

Length=64
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461828 pfam06101, Vps62, Vacuolar protein sorting-associated ...  57.2    3e-12


>CDD:461828 pfam06101, Vps62, Vacuolar protein sorting-associated protein 
62.  Vps62 is a vacuolar protein sorting (VPS) protein required 
for cytoplasm to vacuole targeting of proteins.
Length=539

 Score = 57.2 bits (139),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 27/66 (41%), Positives = 40/66 (61%), Gaps = 7/66 (11%)

Query  4    GDHVGDWEHNMIRFSN--GSPQALWYSQHAGGQAFTYDATE---KQGKRPYAYSAKGTHA  58
            G+HVGDWEH  +R SN  G   ++++SQH+GG+    DA++    +G +P  YS+   HA
Sbjct  365  GEHVGDWEHFTLRISNFTGELWSVYFSQHSGGEWV--DASDLEFIEGNKPVVYSSLHGHA  422

Query  59   VYVMAG  64
             Y   G
Sbjct  423  SYPKPG  428



Lambda      K        H        a         alpha
   0.317    0.131    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00021739

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00026731

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00021740

Length=342


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00026732

Length=342


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00021741

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00021742

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395596 pfam00735, Septin, Septin. Members of this family incl...  115     2e-29


>CDD:395596 pfam00735, Septin, Septin.  Members of this family include CDC3, 
CDC10, CDC11 and CDC12/Septin. Members of this family bind 
GTP. As regards the septins, these are polypeptides of 30-65kDa 
with three characteristic GTPase motifs (G-1, G-3 and 
G-4) that are similar to those of the Ras family. The G-4 motif 
is strictly conserved with a unique septin consensus of 
AKAD. Most septins are thought to have at least one coiled-coil 
region, which in some cases is necessary for intermolecular 
interactions that allow septins to polymerize to form rod-shaped 
complexes. In turn, these are arranged into tandem 
arrays to form filaments. They are multifunctional proteins, 
with roles in cytokinesis, sporulation, germ cell development, 
exocytosis and apoptosis.
Length=272

 Score = 115 bits (289),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 82/362 (23%), Positives = 146/362 (40%), Gaps = 104/362 (29%)

Query  174  PYNVLVIGARNSGKTSFLN-FLRKSLT----MPPHKHPIRSPEEVEAYERHSPANEGFTS  228
             + ++V+G    GKT+F+N      L     +P     I+   E++AY            
Sbjct  3    DFTLMVVGESGLGKTTFINTLFLTDLYRARGIPGPSEKIKKTVEIKAYT-----------  51

Query  229  HYLETEIDGERVGLTLWDSQGLEKNIVDIQ--LRGVTGFLESKFEETLREETKVIRSPGF  286
              +E E DG ++ LT+ D+ G    I D     R +  +++ ++E+ LR+E+ + R    
Sbjct  52   --VEIEEDGVKLNLTVIDTPGFGDAI-DNSNCWRPIVEYIDEQYEQYLRDESGLNRKS-I  107

Query  287  RDTHIHCTFLLLDPV--RLDENIAAAERAAQGTSKATDTPVIGVLDEFLDIQVLRTVLGK  344
            +D  +HC    + P    L                             LD++ ++ +  K
Sbjct  108  KDNRVHCCLYFISPTGHGLKP---------------------------LDVEFMKKLSEK  140

Query  345  TTVVPVISKADTITTAHMSYLKKAVWQSLKKANIDPLEILTLEDQDEYTSSESADEDEEG  404
              ++PVI+KADT+T   +   KK + + +++ NI    I    D++        DEDEE 
Sbjct  141  VNIIPVIAKADTLTPDELQRFKKRIREEIERQNIP---IYHFPDEES-------DEDEE-  189

Query  405  NDPDDNADEEHKAESDLADKGKAEVSPPGSPSQRSEQTTQSSGSQAASQYLPFSILSPDP  464
                                               E        +     +PF+I+  + 
Sbjct  190  ----------------------------------KELN------EQLKSSIPFAIVGSN-  208

Query  465  HSLEAGDEPV-GRKFPWGFANPYDPEHCDFVKLKDSVFTDWRTELREASRVVWYERWRTS  523
              +E   E V GRK+PWG     +P HCDF+KL++ +      +L+E +  + YE +R+ 
Sbjct  209  TVIENDGEKVRGRKYPWGVVEVENPSHCDFLKLRNMLIRTHLQDLKEVTHELHYETYRSE  268

Query  524  RL  525
            +L
Sbjct  269  KL  270



Lambda      K        H        a         alpha
   0.312    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00021743

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395596 pfam00735, Septin, Septin. Members of this family incl...  115     2e-29


>CDD:395596 pfam00735, Septin, Septin.  Members of this family include CDC3, 
CDC10, CDC11 and CDC12/Septin. Members of this family bind 
GTP. As regards the septins, these are polypeptides of 30-65kDa 
with three characteristic GTPase motifs (G-1, G-3 and 
G-4) that are similar to those of the Ras family. The G-4 motif 
is strictly conserved with a unique septin consensus of 
AKAD. Most septins are thought to have at least one coiled-coil 
region, which in some cases is necessary for intermolecular 
interactions that allow septins to polymerize to form rod-shaped 
complexes. In turn, these are arranged into tandem 
arrays to form filaments. They are multifunctional proteins, 
with roles in cytokinesis, sporulation, germ cell development, 
exocytosis and apoptosis.
Length=272

 Score = 115 bits (289),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 82/362 (23%), Positives = 146/362 (40%), Gaps = 104/362 (29%)

Query  174  PYNVLVIGARNSGKTSFLN-FLRKSLT----MPPHKHPIRSPEEVEAYERHSPANEGFTS  228
             + ++V+G    GKT+F+N      L     +P     I+   E++AY            
Sbjct  3    DFTLMVVGESGLGKTTFINTLFLTDLYRARGIPGPSEKIKKTVEIKAYT-----------  51

Query  229  HYLETEIDGERVGLTLWDSQGLEKNIVDIQ--LRGVTGFLESKFEETLREETKVIRSPGF  286
              +E E DG ++ LT+ D+ G    I D     R +  +++ ++E+ LR+E+ + R    
Sbjct  52   --VEIEEDGVKLNLTVIDTPGFGDAI-DNSNCWRPIVEYIDEQYEQYLRDESGLNRKS-I  107

Query  287  RDTHIHCTFLLLDPV--RLDENIAAAERAAQGTSKATDTPVIGVLDEFLDIQVLRTVLGK  344
            +D  +HC    + P    L                             LD++ ++ +  K
Sbjct  108  KDNRVHCCLYFISPTGHGLKP---------------------------LDVEFMKKLSEK  140

Query  345  TTVVPVISKADTITTAHMSYLKKAVWQSLKKANIDPLEILTLEDQDEYTSSESADEDEEG  404
              ++PVI+KADT+T   +   KK + + +++ NI    I    D++        DEDEE 
Sbjct  141  VNIIPVIAKADTLTPDELQRFKKRIREEIERQNIP---IYHFPDEES-------DEDEE-  189

Query  405  NDPDDNADEEHKAESDLADKGKAEVSPPGSPSQRSEQTTQSSGSQAASQYLPFSILSPDP  464
                                               E        +     +PF+I+  + 
Sbjct  190  ----------------------------------KELN------EQLKSSIPFAIVGSN-  208

Query  465  HSLEAGDEPV-GRKFPWGFANPYDPEHCDFVKLKDSVFTDWRTELREASRVVWYERWRTS  523
              +E   E V GRK+PWG     +P HCDF+KL++ +      +L+E +  + YE +R+ 
Sbjct  209  TVIENDGEKVRGRKYPWGVVEVENPSHCDFLKLRNMLIRTHLQDLKEVTHELHYETYRSE  268

Query  524  RL  525
            +L
Sbjct  269  KL  270



Lambda      K        H        a         alpha
   0.312    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00021744

Length=886


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1135491574


Query= TCONS_00021745

Length=886


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1135491574


Query= TCONS_00026735

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395596 pfam00735, Septin, Septin. Members of this family incl...  115     2e-29


>CDD:395596 pfam00735, Septin, Septin.  Members of this family include CDC3, 
CDC10, CDC11 and CDC12/Septin. Members of this family bind 
GTP. As regards the septins, these are polypeptides of 30-65kDa 
with three characteristic GTPase motifs (G-1, G-3 and 
G-4) that are similar to those of the Ras family. The G-4 motif 
is strictly conserved with a unique septin consensus of 
AKAD. Most septins are thought to have at least one coiled-coil 
region, which in some cases is necessary for intermolecular 
interactions that allow septins to polymerize to form rod-shaped 
complexes. In turn, these are arranged into tandem 
arrays to form filaments. They are multifunctional proteins, 
with roles in cytokinesis, sporulation, germ cell development, 
exocytosis and apoptosis.
Length=272

 Score = 115 bits (289),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 82/362 (23%), Positives = 146/362 (40%), Gaps = 104/362 (29%)

Query  174  PYNVLVIGARNSGKTSFLN-FLRKSLT----MPPHKHPIRSPEEVEAYERHSPANEGFTS  228
             + ++V+G    GKT+F+N      L     +P     I+   E++AY            
Sbjct  3    DFTLMVVGESGLGKTTFINTLFLTDLYRARGIPGPSEKIKKTVEIKAYT-----------  51

Query  229  HYLETEIDGERVGLTLWDSQGLEKNIVDIQ--LRGVTGFLESKFEETLREETKVIRSPGF  286
              +E E DG ++ LT+ D+ G    I D     R +  +++ ++E+ LR+E+ + R    
Sbjct  52   --VEIEEDGVKLNLTVIDTPGFGDAI-DNSNCWRPIVEYIDEQYEQYLRDESGLNRKS-I  107

Query  287  RDTHIHCTFLLLDPV--RLDENIAAAERAAQGTSKATDTPVIGVLDEFLDIQVLRTVLGK  344
            +D  +HC    + P    L                             LD++ ++ +  K
Sbjct  108  KDNRVHCCLYFISPTGHGLKP---------------------------LDVEFMKKLSEK  140

Query  345  TTVVPVISKADTITTAHMSYLKKAVWQSLKKANIDPLEILTLEDQDEYTSSESADEDEEG  404
              ++PVI+KADT+T   +   KK + + +++ NI    I    D++        DEDEE 
Sbjct  141  VNIIPVIAKADTLTPDELQRFKKRIREEIERQNIP---IYHFPDEES-------DEDEE-  189

Query  405  NDPDDNADEEHKAESDLADKGKAEVSPPGSPSQRSEQTTQSSGSQAASQYLPFSILSPDP  464
                                               E        +     +PF+I+  + 
Sbjct  190  ----------------------------------KELN------EQLKSSIPFAIVGSN-  208

Query  465  HSLEAGDEPV-GRKFPWGFANPYDPEHCDFVKLKDSVFTDWRTELREASRVVWYERWRTS  523
              +E   E V GRK+PWG     +P HCDF+KL++ +      +L+E +  + YE +R+ 
Sbjct  209  TVIENDGEKVRGRKYPWGVVEVENPSHCDFLKLRNMLIRTHLQDLKEVTHELHYETYRSE  268

Query  524  RL  525
            +L
Sbjct  269  KL  270



Lambda      K        H        a         alpha
   0.312    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00026736

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395596 pfam00735, Septin, Septin. Members of this family incl...  115     2e-29


>CDD:395596 pfam00735, Septin, Septin.  Members of this family include CDC3, 
CDC10, CDC11 and CDC12/Septin. Members of this family bind 
GTP. As regards the septins, these are polypeptides of 30-65kDa 
with three characteristic GTPase motifs (G-1, G-3 and 
G-4) that are similar to those of the Ras family. The G-4 motif 
is strictly conserved with a unique septin consensus of 
AKAD. Most septins are thought to have at least one coiled-coil 
region, which in some cases is necessary for intermolecular 
interactions that allow septins to polymerize to form rod-shaped 
complexes. In turn, these are arranged into tandem 
arrays to form filaments. They are multifunctional proteins, 
with roles in cytokinesis, sporulation, germ cell development, 
exocytosis and apoptosis.
Length=272

 Score = 115 bits (289),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 82/362 (23%), Positives = 146/362 (40%), Gaps = 104/362 (29%)

Query  174  PYNVLVIGARNSGKTSFLN-FLRKSLT----MPPHKHPIRSPEEVEAYERHSPANEGFTS  228
             + ++V+G    GKT+F+N      L     +P     I+   E++AY            
Sbjct  3    DFTLMVVGESGLGKTTFINTLFLTDLYRARGIPGPSEKIKKTVEIKAYT-----------  51

Query  229  HYLETEIDGERVGLTLWDSQGLEKNIVDIQ--LRGVTGFLESKFEETLREETKVIRSPGF  286
              +E E DG ++ LT+ D+ G    I D     R +  +++ ++E+ LR+E+ + R    
Sbjct  52   --VEIEEDGVKLNLTVIDTPGFGDAI-DNSNCWRPIVEYIDEQYEQYLRDESGLNRKS-I  107

Query  287  RDTHIHCTFLLLDPV--RLDENIAAAERAAQGTSKATDTPVIGVLDEFLDIQVLRTVLGK  344
            +D  +HC    + P    L                             LD++ ++ +  K
Sbjct  108  KDNRVHCCLYFISPTGHGLKP---------------------------LDVEFMKKLSEK  140

Query  345  TTVVPVISKADTITTAHMSYLKKAVWQSLKKANIDPLEILTLEDQDEYTSSESADEDEEG  404
              ++PVI+KADT+T   +   KK + + +++ NI    I    D++        DEDEE 
Sbjct  141  VNIIPVIAKADTLTPDELQRFKKRIREEIERQNIP---IYHFPDEES-------DEDEE-  189

Query  405  NDPDDNADEEHKAESDLADKGKAEVSPPGSPSQRSEQTTQSSGSQAASQYLPFSILSPDP  464
                                               E        +     +PF+I+  + 
Sbjct  190  ----------------------------------KELN------EQLKSSIPFAIVGSN-  208

Query  465  HSLEAGDEPV-GRKFPWGFANPYDPEHCDFVKLKDSVFTDWRTELREASRVVWYERWRTS  523
              +E   E V GRK+PWG     +P HCDF+KL++ +      +L+E +  + YE +R+ 
Sbjct  209  TVIENDGEKVRGRKYPWGVVEVENPSHCDFLKLRNMLIRTHLQDLKEVTHELHYETYRSE  268

Query  524  RL  525
            +L
Sbjct  269  KL  270



Lambda      K        H        a         alpha
   0.312    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00026737

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395596 pfam00735, Septin, Septin. Members of this family incl...  99.3    1e-24


>CDD:395596 pfam00735, Septin, Septin.  Members of this family include CDC3, 
CDC10, CDC11 and CDC12/Septin. Members of this family bind 
GTP. As regards the septins, these are polypeptides of 30-65kDa 
with three characteristic GTPase motifs (G-1, G-3 and 
G-4) that are similar to those of the Ras family. The G-4 motif 
is strictly conserved with a unique septin consensus of 
AKAD. Most septins are thought to have at least one coiled-coil 
region, which in some cases is necessary for intermolecular 
interactions that allow septins to polymerize to form rod-shaped 
complexes. In turn, these are arranged into tandem 
arrays to form filaments. They are multifunctional proteins, 
with roles in cytokinesis, sporulation, germ cell development, 
exocytosis and apoptosis.
Length=272

 Score = 99.3 bits (248),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 122/299 (41%), Gaps = 86/299 (29%)

Query  33   ETEIDGERVGLTLWDSQGLEKNIVDIQ--LRGVTGFLESKFEETLREETKVIRSPGFRDT  90
            E E DG ++ LT+ D+ G    I D     R +  +++ ++E+ LR+E+ + R    +D 
Sbjct  53   EIEEDGVKLNLTVIDTPGFGDAI-DNSNCWRPIVEYIDEQYEQYLRDESGLNRKS-IKDN  110

Query  91   HIHCTFLLLDPV--RLDENIAAAERAAQGTSKATDTPVIGVLDEFLDIQVLRTVLGKTTV  148
             +HC    + P    L                             LD++ ++ +  K  +
Sbjct  111  RVHCCLYFISPTGHGLKP---------------------------LDVEFMKKLSEKVNI  143

Query  149  VPVISKADTITTAHMSYLKKAVWQSLKKANIDPLEILTLEDQDEYTSSESADEDEEGNDP  208
            +PVI+KADT+T   +   KK + + +++ NI    I    D++        DEDEE    
Sbjct  144  IPVIAKADTLTPDELQRFKKRIREEIERQNIP---IYHFPDEES-------DEDEE----  189

Query  209  DDNADEEHKAESDLADKGKAEVSPPGSPSQRSEQTTQSSGSQAASQYLPFSILSPDPHSL  268
                                            E        +     +PF+I+  +   +
Sbjct  190  -------------------------------KELN------EQLKSSIPFAIVGSN-TVI  211

Query  269  EAGDEPV-GRKFPWGFANPYDPEHCDFVKLKDSVFTDWRTELREASRVVWYERWRTSRL  326
            E   E V GRK+PWG     +P HCDF+KL++ +      +L+E +  + YE +R+ +L
Sbjct  212  ENDGEKVRGRKYPWGVVEVENPSHCDFLKLRNMLIRTHLQDLKEVTHELHYETYRSEKL  270



Lambda      K        H        a         alpha
   0.312    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00021746

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395596 pfam00735, Septin, Septin. Members of this family incl...  99.3    1e-24


>CDD:395596 pfam00735, Septin, Septin.  Members of this family include CDC3, 
CDC10, CDC11 and CDC12/Septin. Members of this family bind 
GTP. As regards the septins, these are polypeptides of 30-65kDa 
with three characteristic GTPase motifs (G-1, G-3 and 
G-4) that are similar to those of the Ras family. The G-4 motif 
is strictly conserved with a unique septin consensus of 
AKAD. Most septins are thought to have at least one coiled-coil 
region, which in some cases is necessary for intermolecular 
interactions that allow septins to polymerize to form rod-shaped 
complexes. In turn, these are arranged into tandem 
arrays to form filaments. They are multifunctional proteins, 
with roles in cytokinesis, sporulation, germ cell development, 
exocytosis and apoptosis.
Length=272

 Score = 99.3 bits (248),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 122/299 (41%), Gaps = 86/299 (29%)

Query  33   ETEIDGERVGLTLWDSQGLEKNIVDIQ--LRGVTGFLESKFEETLREETKVIRSPGFRDT  90
            E E DG ++ LT+ D+ G    I D     R +  +++ ++E+ LR+E+ + R    +D 
Sbjct  53   EIEEDGVKLNLTVIDTPGFGDAI-DNSNCWRPIVEYIDEQYEQYLRDESGLNRKS-IKDN  110

Query  91   HIHCTFLLLDPV--RLDENIAAAERAAQGTSKATDTPVIGVLDEFLDIQVLRTVLGKTTV  148
             +HC    + P    L                             LD++ ++ +  K  +
Sbjct  111  RVHCCLYFISPTGHGLKP---------------------------LDVEFMKKLSEKVNI  143

Query  149  VPVISKADTITTAHMSYLKKAVWQSLKKANIDPLEILTLEDQDEYTSSESADEDEEGNDP  208
            +PVI+KADT+T   +   KK + + +++ NI    I    D++        DEDEE    
Sbjct  144  IPVIAKADTLTPDELQRFKKRIREEIERQNIP---IYHFPDEES-------DEDEE----  189

Query  209  DDNADEEHKAESDLADKGKAEVSPPGSPSQRSEQTTQSSGSQAASQYLPFSILSPDPHSL  268
                                            E        +     +PF+I+  +   +
Sbjct  190  -------------------------------KELN------EQLKSSIPFAIVGSN-TVI  211

Query  269  EAGDEPV-GRKFPWGFANPYDPEHCDFVKLKDSVFTDWRTELREASRVVWYERWRTSRL  326
            E   E V GRK+PWG     +P HCDF+KL++ +      +L+E +  + YE +R+ +L
Sbjct  212  ENDGEKVRGRKYPWGVVEVENPSHCDFLKLRNMLIRTHLQDLKEVTHELHYETYRSEKL  270



Lambda      K        H        a         alpha
   0.312    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00021747

Length=805


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1034613072


Query= TCONS_00026738

Length=886


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 1135491574


Query= TCONS_00026739

Length=886


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1135491574


Query= TCONS_00021748

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00026740

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465367 pfam17168, DUF5127, Domain of unknown function (DUF5127)   329     4e-110
CDD:465097 pfam16335, DUF4965, Domain of unknown function (DUF496...  326     9e-110
CDD:430198 pfam08760, DUF1793, Domain of unknown function (DUF179...  236     4e-75 


>CDD:465367 pfam17168, DUF5127, Domain of unknown function (DUF5127).  
Length=226

 Score = 329 bits (846),  Expect = 4e-110, Method: Composition-based stats.
 Identities = 119/234 (51%), Positives = 149/234 (64%), Gaps = 9/234 (4%)

Query  103  TKSIFTFHVGDAVEMKVTFLSPITPNDLRRQSLTFSYVHVAVSSIDGNSHDVQLYSDISA  162
            T++IFTF  G  VE+ VTFLSP+ P+DL RQSL FSY+ V VSS DG SHDVQ+YSDISA
Sbjct  1    TRTIFTFTAGGPVELTVTFLSPVLPDDLDRQSLPFSYLTVEVSSTDGKSHDVQVYSDISA  60

Query  163  EWVSGDRTAVAEWEYGVTHDGVAYHKVHRQTQLHFSEVRDQAEWGNWYWATEHSDR-MTH  221
            EW SGD + V  W  G    G +YHKV  Q Q   SE  D+A+WG  Y AT  S   +T+
Sbjct  61   EWASGDPSQVVTWSTG----GTSYHKVGTQDQPVLSEKGDRADWGYAYLATPASSSSLTY  116

Query  222  QSGADVAVRGAFASNGTLGDSEDSNYRAISTNWPVFGFAIDMGSVTSSSVETHFTIGLAQ  281
            QSG+D  VRG FA NG L +++D+N+RAI+ +WPVF FA D+GSV+++SV   F IG  +
Sbjct  117  QSGSDTDVRGQFAKNGKLANTQDTNFRAINDDWPVFAFAHDLGSVSTTSVSVVFAIGYDR  176

Query  282  SEAIQYSSPDGIRAEPSLWTSYFDDELAALEFFHYDYSTANKLSSALDERIARD  335
              AIQY      +     W S +     AL FF  DYS A   S+ALD +I  D
Sbjct  177  DPAIQYFG----QNLRPYWRSKYSSIADALSFFLNDYSAALARSTALDAKIRAD  226


>CDD:465097 pfam16335, DUF4965, Domain of unknown function (DUF4965).  This 
family consists of uncharacterized proteins around 840 residues 
in length and is mainly found in various Bacteroides 
species. Several proteins in this family are annotated as Glutaminases, 
but the function of this protein is unknown.
Length=174

 Score = 326 bits (839),  Expect = 9e-110, Method: Composition-based stats.
 Identities = 113/174 (65%), Positives = 135/174 (78%), Gaps = 2/174 (1%)

Query  339  AAGQDYLTITSLSARQAFAATQLCGTL--QNPYLFMKEISSNGNMNTVDVIFPAHPVFLY  396
            A G DY  I +LS RQAFAA +L  T    +   FMKEISSNGN+NTVDVI+PA P+FLY
Sbjct  1    AGGSDYADILALSYRQAFAAHELTITDNTGDVLAFMKEISSNGNVNTVDVIYPAFPIFLY  60

Query  397  TNPELLELLMKPHFEIQESGQYPNAYAMHDIGTHYPNATGHPEGNDEPMPLEECGNMIIM  456
             NPELL+LL++P  E QESG+YPN YA HD+GTHYPNATGH +GNDE MP+EE GNM+IM
Sbjct  61   LNPELLKLLLEPLLEYQESGRYPNPYAPHDLGTHYPNATGHNDGNDEQMPVEESGNMLIM  120

Query  457  ALAYALKSSNTDYLNEHYPLLEQWTSYLVDEAIYPANQISTDDFAGPLANQTNL  510
             LAYA  + +T YL+++Y LL QW  YLV+  + PANQ+STDDFAG LANQTNL
Sbjct  121  TLAYAQATGDTSYLSQYYDLLTQWADYLVENGLDPANQLSTDDFAGHLANQTNL  174


>CDD:430198 pfam08760, DUF1793, Domain of unknown function (DUF1793).  This 
presumed domain is found at the C-terminus of a glutaminase 
protein from fungi. This domain is also found as a single 
domain protein in Bacteroides thetaiotaomicron.
Length=169

 Score = 236 bits (605),  Expect = 4e-75, Method: Composition-based stats.
 Identities = 91/151 (60%), Positives = 107/151 (71%), Gaps = 5/151 (3%)

Query  516  IGIEAMATISKLTHHADAATNRSAIAHDYIDRWQVLGIAHEADPPHTTLSYGSNDSHGLL  575
            IGI AM+ I++L    D A N S+IA +Y  +W+ L I    D  H TL+YG   S  LL
Sbjct  1    IGIAAMSEIAELLGDTDDAANYSSIAKEYAKKWEELAI----DGDHYTLAYGDPGSWSLL  56

Query  576  YNLYADRELGLNLVPQSVYDMQSHFYPTVQKKYGVPLDTRHQYTKGDWELFTAAVAS-TS  634
            YNLYAD+ LGLNL P SVYDMQS FYPTVQ+KYG+PLD+RH YTK DWE++TAA AS TS
Sbjct  57   YNLYADKLLGLNLFPDSVYDMQSAFYPTVQQKYGLPLDSRHTYTKSDWEMWTAATASDTS  116

Query  635  TRDMFIELLANWINQTPTNRALTDLYDTVNG  665
            TRDMFI+ LA W N+TPT    TDLYDT   
Sbjct  117  TRDMFIDPLAKWANETPTRVPFTDLYDTEGT  147



Lambda      K        H        a         alpha
   0.316    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 845054670


Query= TCONS_00021749

Length=691
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465367 pfam17168, DUF5127, Domain of unknown function (DUF5127)   331     2e-110
CDD:465097 pfam16335, DUF4965, Domain of unknown function (DUF496...  326     2e-109
CDD:430198 pfam08760, DUF1793, Domain of unknown function (DUF179...  272     1e-88 


>CDD:465367 pfam17168, DUF5127, Domain of unknown function (DUF5127).  
Length=226

 Score = 331 bits (850),  Expect = 2e-110, Method: Composition-based stats.
 Identities = 119/234 (51%), Positives = 149/234 (64%), Gaps = 9/234 (4%)

Query  103  TKSIFTFHVGDAVEMKVTFLSPITPNDLRRQSLTFSYVHVAVSSIDGNSHDVQLYSDISA  162
            T++IFTF  G  VE+ VTFLSP+ P+DL RQSL FSY+ V VSS DG SHDVQ+YSDISA
Sbjct  1    TRTIFTFTAGGPVELTVTFLSPVLPDDLDRQSLPFSYLTVEVSSTDGKSHDVQVYSDISA  60

Query  163  EWVSGDRTAVAEWEYGVTHDGVAYHKVHRQTQLHFSEVRDQAEWGNWYWATEHSDR-MTH  221
            EW SGD + V  W  G    G +YHKV  Q Q   SE  D+A+WG  Y AT  S   +T+
Sbjct  61   EWASGDPSQVVTWSTG----GTSYHKVGTQDQPVLSEKGDRADWGYAYLATPASSSSLTY  116

Query  222  QSGADVAVRGAFASNGTLGDSEDSNYRAISTNWPVFGFAIDMGSVTSSSVETHFTIGLAQ  281
            QSG+D  VRG FA NG L +++D+N+RAI+ +WPVF FA D+GSV+++SV   F IG  +
Sbjct  117  QSGSDTDVRGQFAKNGKLANTQDTNFRAINDDWPVFAFAHDLGSVSTTSVSVVFAIGYDR  176

Query  282  SEAIQYSSPDGIRAEPSLWTSYFDDELAALEFFHYDYSTANKLSSALDERIARD  335
              AIQY      +     W S +     AL FF  DYS A   S+ALD +I  D
Sbjct  177  DPAIQYFG----QNLRPYWRSKYSSIADALSFFLNDYSAALARSTALDAKIRAD  226


>CDD:465097 pfam16335, DUF4965, Domain of unknown function (DUF4965).  This 
family consists of uncharacterized proteins around 840 residues 
in length and is mainly found in various Bacteroides 
species. Several proteins in this family are annotated as Glutaminases, 
but the function of this protein is unknown.
Length=174

 Score = 326 bits (839),  Expect = 2e-109, Method: Composition-based stats.
 Identities = 113/174 (65%), Positives = 135/174 (78%), Gaps = 2/174 (1%)

Query  339  AAGQDYLTITSLSARQAFAATQLCGTL--QNPYLFMKEISSNGNMNTVDVIFPAHPVFLY  396
            A G DY  I +LS RQAFAA +L  T    +   FMKEISSNGN+NTVDVI+PA P+FLY
Sbjct  1    AGGSDYADILALSYRQAFAAHELTITDNTGDVLAFMKEISSNGNVNTVDVIYPAFPIFLY  60

Query  397  TNPELLELLMKPHFEIQESGQYPNAYAMHDIGTHYPNATGHPEGNDEPMPLEECGNMIIM  456
             NPELL+LL++P  E QESG+YPN YA HD+GTHYPNATGH +GNDE MP+EE GNM+IM
Sbjct  61   LNPELLKLLLEPLLEYQESGRYPNPYAPHDLGTHYPNATGHNDGNDEQMPVEESGNMLIM  120

Query  457  ALAYALKSSNTDYLNEHYPLLEQWTSYLVDEAIYPANQISTDDFAGPLANQTNL  510
             LAYA  + +T YL+++Y LL QW  YLV+  + PANQ+STDDFAG LANQTNL
Sbjct  121  TLAYAQATGDTSYLSQYYDLLTQWADYLVENGLDPANQLSTDDFAGHLANQTNL  174


>CDD:430198 pfam08760, DUF1793, Domain of unknown function (DUF1793).  This 
presumed domain is found at the C-terminus of a glutaminase 
protein from fungi. This domain is also found as a single 
domain protein in Bacteroides thetaiotaomicron.
Length=169

 Score = 272 bits (698),  Expect = 1e-88, Method: Composition-based stats.
 Identities = 106/173 (61%), Positives = 123/173 (71%), Gaps = 6/173 (3%)

Query  516  IGIEAMATISKLTHHADAATNRSAIAHDYIDRWQVLGIAHEADPPHTTLSYGSNDSHGLL  575
            IGI AM+ I++L    D A N S+IA +Y  +W+ L I    D  H TL+YG   S  LL
Sbjct  1    IGIAAMSEIAELLGDTDDAANYSSIAKEYAKKWEELAI----DGDHYTLAYGDPGSWSLL  56

Query  576  YNLYADRELGLNLVPQSVYDMQSHFYPTVQKKYGVPLDTRHQYTKGDWELFTAAVAS-TS  634
            YNLYAD+ LGLNL P SVYDMQS FYPTVQ+KYG+PLD+RH YTK DWE++TAA AS TS
Sbjct  57   YNLYADKLLGLNLFPDSVYDMQSAFYPTVQQKYGLPLDSRHTYTKSDWEMWTAATASDTS  116

Query  635  TRDMFIELLANWINQTPTNRALTDLYDTV-NGDYPGITFIARPVMGGAFALLL  686
            TRDMFI+ LA W N+TPT    TDLYDT   G YPG  F ARPV+GG FALL 
Sbjct  117  TRDMFIDPLAKWANETPTRVPFTDLYDTEGTGGYPGGGFRARPVVGGHFALLA  169



Lambda      K        H        a         alpha
   0.317    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 881924420


Query= TCONS_00021750

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460348 pfam01822, WSC, WSC domain. This domain may be involve...  62.9    9e-14


>CDD:460348 pfam01822, WSC, WSC domain.  This domain may be involved in carbohydrate 
binding.
Length=82

 Score = 62.9 bits (153),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 25/79 (32%), Positives = 36/79 (46%), Gaps = 8/79 (10%)

Query  29  CYNSPGD-----LTLAESSEFMSRGMCEAKCEKN--AVLAVQ-GTDCYCGSSIPSSSAKV  80
           CY+         L  +   + M+   C A C         ++ G +CYCG+S+PS SA  
Sbjct  4   CYSDGTGGRRLLLGSSGDYDDMTPEKCIAFCSAAGYTYAGLEYGGECYCGNSLPSGSALA  63

Query  81  SDDKCDTLCPGYAVDYCGG  99
               C+T CPG +   CGG
Sbjct  64  DSSDCNTPCPGDSSQTCGG  82



Lambda      K        H        a         alpha
   0.310    0.121    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00021751

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460348 pfam01822, WSC, WSC domain. This domain may be involve...  62.9    9e-14


>CDD:460348 pfam01822, WSC, WSC domain.  This domain may be involved in carbohydrate 
binding.
Length=82

 Score = 62.9 bits (153),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 25/79 (32%), Positives = 36/79 (46%), Gaps = 8/79 (10%)

Query  29  CYNSPGD-----LTLAESSEFMSRGMCEAKCEKN--AVLAVQ-GTDCYCGSSIPSSSAKV  80
           CY+         L  +   + M+   C A C         ++ G +CYCG+S+PS SA  
Sbjct  4   CYSDGTGGRRLLLGSSGDYDDMTPEKCIAFCSAAGYTYAGLEYGGECYCGNSLPSGSALA  63

Query  81  SDDKCDTLCPGYAVDYCGG  99
               C+T CPG +   CGG
Sbjct  64  DSSDCNTPCPGDSSQTCGG  82



Lambda      K        H        a         alpha
   0.310    0.121    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00021752

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460348 pfam01822, WSC, WSC domain. This domain may be involve...  62.9    9e-14


>CDD:460348 pfam01822, WSC, WSC domain.  This domain may be involved in carbohydrate 
binding.
Length=82

 Score = 62.9 bits (153),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 25/79 (32%), Positives = 36/79 (46%), Gaps = 8/79 (10%)

Query  29  CYNSPGD-----LTLAESSEFMSRGMCEAKCEKN--AVLAVQ-GTDCYCGSSIPSSSAKV  80
           CY+         L  +   + M+   C A C         ++ G +CYCG+S+PS SA  
Sbjct  4   CYSDGTGGRRLLLGSSGDYDDMTPEKCIAFCSAAGYTYAGLEYGGECYCGNSLPSGSALA  63

Query  81  SDDKCDTLCPGYAVDYCGG  99
               C+T CPG +   CGG
Sbjct  64  DSSDCNTPCPGDSSQTCGG  82



Lambda      K        H        a         alpha
   0.310    0.121    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00021753

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460348 pfam01822, WSC, WSC domain. This domain may be involve...  62.9    9e-14


>CDD:460348 pfam01822, WSC, WSC domain.  This domain may be involved in carbohydrate 
binding.
Length=82

 Score = 62.9 bits (153),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 25/79 (32%), Positives = 36/79 (46%), Gaps = 8/79 (10%)

Query  29  CYNSPGD-----LTLAESSEFMSRGMCEAKCEKN--AVLAVQ-GTDCYCGSSIPSSSAKV  80
           CY+         L  +   + M+   C A C         ++ G +CYCG+S+PS SA  
Sbjct  4   CYSDGTGGRRLLLGSSGDYDDMTPEKCIAFCSAAGYTYAGLEYGGECYCGNSLPSGSALA  63

Query  81  SDDKCDTLCPGYAVDYCGG  99
               C+T CPG +   CGG
Sbjct  64  DSSDCNTPCPGDSSQTCGG  82



Lambda      K        H        a         alpha
   0.310    0.121    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00026742

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460348 pfam01822, WSC, WSC domain. This domain may be involve...  61.3    2e-13


>CDD:460348 pfam01822, WSC, WSC domain.  This domain may be involved in carbohydrate 
binding.
Length=82

 Score = 61.3 bits (149),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 25/79 (32%), Positives = 36/79 (46%), Gaps = 8/79 (10%)

Query  29  CYNSPGD-----LTLAESSEFMSRGMCEAKCEKN--AVLAVQ-GTDCYCGSSIPSSSAKV  80
           CY+         L  +   + M+   C A C         ++ G +CYCG+S+PS SA  
Sbjct  4   CYSDGTGGRRLLLGSSGDYDDMTPEKCIAFCSAAGYTYAGLEYGGECYCGNSLPSGSALA  63

Query  81  SDDKCDTLCPGYAVDYCGG  99
               C+T CPG +   CGG
Sbjct  64  DSSDCNTPCPGDSSQTCGG  82



Lambda      K        H        a         alpha
   0.311    0.122    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00026743

Length=374


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00021754

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460348 pfam01822, WSC, WSC domain. This domain may be involve...  62.9    9e-14


>CDD:460348 pfam01822, WSC, WSC domain.  This domain may be involved in carbohydrate 
binding.
Length=82

 Score = 62.9 bits (153),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 25/79 (32%), Positives = 36/79 (46%), Gaps = 8/79 (10%)

Query  29  CYNSPGD-----LTLAESSEFMSRGMCEAKCEKN--AVLAVQ-GTDCYCGSSIPSSSAKV  80
           CY+         L  +   + M+   C A C         ++ G +CYCG+S+PS SA  
Sbjct  4   CYSDGTGGRRLLLGSSGDYDDMTPEKCIAFCSAAGYTYAGLEYGGECYCGNSLPSGSALA  63

Query  81  SDDKCDTLCPGYAVDYCGG  99
               C+T CPG +   CGG
Sbjct  64  DSSDCNTPCPGDSSQTCGG  82



Lambda      K        H        a         alpha
   0.310    0.121    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00021755

Length=474


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00021756

Length=446


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00026744

Length=418


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00026745

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00021758

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00021759

Length=329


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 385413556


Query= TCONS_00026747

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00026746

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00026750

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00026749

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00026752

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00026751

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00021761

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00021760

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00026753

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            99.4    3e-23
CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         67.7    2e-12


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 99.4 bits (248),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 42/171 (25%), Positives = 73/171 (43%), Gaps = 0/171 (0%)

Query  14   YCLMGGGMTPILAAGFNQVSESYGVSTQKVAYTTGLYMLGLGVGSVIMSPTAILWGKRPV  73
              L   G + +  A    ++E  G+S  ++     L+ LG  +   +    +  +G+R V
Sbjct  5    AFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRV  64

Query  74   YLLGATLFVLSAVWCALSPNYPSLVIARIFQGIAVSTVECLPSATIAEIYFLHERAYRVG  133
             L+G  LF L  +    + +   L++ R+ QG+    +     A IA+ +   ER   +G
Sbjct  65   LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALG  124

Query  134  IYTLLLLGGKNLVPLVSAAIIGRMGWRWVFWIVAIIVGACLVLLFFFVPET  184
            + +     G  L PL+   +    GWR  F I+AI+     VLL    P  
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPP  175


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 67.7 bits (166),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 34/150 (23%), Positives = 59/150 (39%), Gaps = 17/150 (11%)

Query  46   TTGLYMLGLGVGSVIMSPTAILWGKRPVYLLGATLFVLSAVWCALSPNYPS---LVIARI  102
               ++ +G  +GS+        +G++   L+   LFV+ AV    +    S   L++ R+
Sbjct  51   IVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRV  110

Query  103  FQGIAVSTVECLPSATIAEIYFLHERAYRVGIYTLLLLGGKNLVPLVSAAIIGR------  156
              GI V     L    I+EI     R     +Y L +  G     ++ A I G       
Sbjct  111  LVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFG-----ILLAYIFGLGLNKTS  165

Query  157  --MGWRWVFWIVAIIVGACLVLLFFFVPET  184
               GWR    +  +     L++   F+PE+
Sbjct  166  NSDGWRIPLGLQLVPALL-LIIGLLFLPES  194



Lambda      K        H        a         alpha
   0.324    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 750202856


Query= TCONS_00021763

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            107     8e-26
CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         71.5    1e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 107 bits (269),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 82/201 (41%), Gaps = 3/201 (1%)

Query  158  YCLMGGGMTPILAAGFNQVSESYGVSTQKVAYTTGLYMLGLGVGSVIMSPTAILWGKRPV  217
              L   G + +  A    ++E  G+S  ++     L+ LG  +   +    +  +G+R V
Sbjct  5    AFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRV  64

Query  218  YLLGATLFVLSAVWCALSPNYPSLVIARIFQGIAVSTVECLPSATIAEIYFLHERAYRVG  277
             L+G  LF L  +    + +   L++ R+ QG+    +     A IA+ +   ER   +G
Sbjct  65   LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALG  124

Query  278  IYTLLLLGGKNLVPLVSAAIIGRMGWRWVFWIVAIIVGACLVLLFFFVPETFWDRTPRPR  337
            + +     G  L PL+   +    GWR  F I+AI+     VLL    P      + RP+
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPP---ESKRPK  181

Query  338  RSHKRPHPMRSVSDLLRGRQL  358
             + +    +      L    +
Sbjct  182  PAEEARLSLIVAWKALLRDPV  202


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 71.5 bits (176),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/150 (23%), Positives = 59/150 (39%), Gaps = 17/150 (11%)

Query  190  TTGLYMLGLGVGSVIMSPTAILWGKRPVYLLGATLFVLSAVWCALSPNYPS---LVIARI  246
               ++ +G  +GS+        +G++   L+   LFV+ AV    +    S   L++ R+
Sbjct  51   IVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRV  110

Query  247  FQGIAVSTVECLPSATIAEIYFLHERAYRVGIYTLLLLGGKNLVPLVSAAIIGR------  300
              GI V     L    I+EI     R     +Y L +  G     ++ A I G       
Sbjct  111  LVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFG-----ILLAYIFGLGLNKTS  165

Query  301  --MGWRWVFWIVAIIVGACLVLLFFFVPET  328
               GWR    +  +     L++   F+PE+
Sbjct  166  NSDGWRIPLGLQLVPALL-LIIGLLFLPES  194



Lambda      K        H        a         alpha
   0.321    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 937117888


Query= TCONS_00021762

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            107     8e-26
CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         71.5    1e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 107 bits (269),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 82/201 (41%), Gaps = 3/201 (1%)

Query  158  YCLMGGGMTPILAAGFNQVSESYGVSTQKVAYTTGLYMLGLGVGSVIMSPTAILWGKRPV  217
              L   G + +  A    ++E  G+S  ++     L+ LG  +   +    +  +G+R V
Sbjct  5    AFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRV  64

Query  218  YLLGATLFVLSAVWCALSPNYPSLVIARIFQGIAVSTVECLPSATIAEIYFLHERAYRVG  277
             L+G  LF L  +    + +   L++ R+ QG+    +     A IA+ +   ER   +G
Sbjct  65   LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALG  124

Query  278  IYTLLLLGGKNLVPLVSAAIIGRMGWRWVFWIVAIIVGACLVLLFFFVPETFWDRTPRPR  337
            + +     G  L PL+   +    GWR  F I+AI+     VLL    P      + RP+
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPP---ESKRPK  181

Query  338  RSHKRPHPMRSVSDLLRGRQL  358
             + +    +      L    +
Sbjct  182  PAEEARLSLIVAWKALLRDPV  202


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 71.5 bits (176),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/150 (23%), Positives = 59/150 (39%), Gaps = 17/150 (11%)

Query  190  TTGLYMLGLGVGSVIMSPTAILWGKRPVYLLGATLFVLSAVWCALSPNYPS---LVIARI  246
               ++ +G  +GS+        +G++   L+   LFV+ AV    +    S   L++ R+
Sbjct  51   IVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRV  110

Query  247  FQGIAVSTVECLPSATIAEIYFLHERAYRVGIYTLLLLGGKNLVPLVSAAIIGR------  300
              GI V     L    I+EI     R     +Y L +  G     ++ A I G       
Sbjct  111  LVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFG-----ILLAYIFGLGLNKTS  165

Query  301  --MGWRWVFWIVAIIVGACLVLLFFFVPET  328
               GWR    +  +     L++   F+PE+
Sbjct  166  NSDGWRIPLGLQLVPALL-LIIGLLFLPES  194



Lambda      K        H        a         alpha
   0.321    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 937117888


Query= TCONS_00021764

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0814    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00021765

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            107     8e-26
CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         71.5    1e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 107 bits (269),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 82/201 (41%), Gaps = 3/201 (1%)

Query  158  YCLMGGGMTPILAAGFNQVSESYGVSTQKVAYTTGLYMLGLGVGSVIMSPTAILWGKRPV  217
              L   G + +  A    ++E  G+S  ++     L+ LG  +   +    +  +G+R V
Sbjct  5    AFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRV  64

Query  218  YLLGATLFVLSAVWCALSPNYPSLVIARIFQGIAVSTVECLPSATIAEIYFLHERAYRVG  277
             L+G  LF L  +    + +   L++ R+ QG+    +     A IA+ +   ER   +G
Sbjct  65   LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALG  124

Query  278  IYTLLLLGGKNLVPLVSAAIIGRMGWRWVFWIVAIIVGACLVLLFFFVPETFWDRTPRPR  337
            + +     G  L PL+   +    GWR  F I+AI+     VLL    P      + RP+
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPP---ESKRPK  181

Query  338  RSHKRPHPMRSVSDLLRGRQL  358
             + +    +      L    +
Sbjct  182  PAEEARLSLIVAWKALLRDPV  202


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 71.5 bits (176),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/150 (23%), Positives = 59/150 (39%), Gaps = 17/150 (11%)

Query  190  TTGLYMLGLGVGSVIMSPTAILWGKRPVYLLGATLFVLSAVWCALSPNYPS---LVIARI  246
               ++ +G  +GS+        +G++   L+   LFV+ AV    +    S   L++ R+
Sbjct  51   IVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRV  110

Query  247  FQGIAVSTVECLPSATIAEIYFLHERAYRVGIYTLLLLGGKNLVPLVSAAIIGR------  300
              GI V     L    I+EI     R     +Y L +  G     ++ A I G       
Sbjct  111  LVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFG-----ILLAYIFGLGLNKTS  165

Query  301  --MGWRWVFWIVAIIVGACLVLLFFFVPET  328
               GWR    +  +     L++   F+PE+
Sbjct  166  NSDGWRIPLGLQLVPALL-LIIGLLFLPES  194



Lambda      K        H        a         alpha
   0.321    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 937117888


Query= TCONS_00026754

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00021766

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00021767

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            107     8e-26
CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         71.5    1e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 107 bits (269),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 82/201 (41%), Gaps = 3/201 (1%)

Query  158  YCLMGGGMTPILAAGFNQVSESYGVSTQKVAYTTGLYMLGLGVGSVIMSPTAILWGKRPV  217
              L   G + +  A    ++E  G+S  ++     L+ LG  +   +    +  +G+R V
Sbjct  5    AFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRV  64

Query  218  YLLGATLFVLSAVWCALSPNYPSLVIARIFQGIAVSTVECLPSATIAEIYFLHERAYRVG  277
             L+G  LF L  +    + +   L++ R+ QG+    +     A IA+ +   ER   +G
Sbjct  65   LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALG  124

Query  278  IYTLLLLGGKNLVPLVSAAIIGRMGWRWVFWIVAIIVGACLVLLFFFVPETFWDRTPRPR  337
            + +     G  L PL+   +    GWR  F I+AI+     VLL    P      + RP+
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPP---ESKRPK  181

Query  338  RSHKRPHPMRSVSDLLRGRQL  358
             + +    +      L    +
Sbjct  182  PAEEARLSLIVAWKALLRDPV  202


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 71.5 bits (176),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/150 (23%), Positives = 59/150 (39%), Gaps = 17/150 (11%)

Query  190  TTGLYMLGLGVGSVIMSPTAILWGKRPVYLLGATLFVLSAVWCALSPNYPS---LVIARI  246
               ++ +G  +GS+        +G++   L+   LFV+ AV    +    S   L++ R+
Sbjct  51   IVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRV  110

Query  247  FQGIAVSTVECLPSATIAEIYFLHERAYRVGIYTLLLLGGKNLVPLVSAAIIGR------  300
              GI V     L    I+EI     R     +Y L +  G     ++ A I G       
Sbjct  111  LVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFG-----ILLAYIFGLGLNKTS  165

Query  301  --MGWRWVFWIVAIIVGACLVLLFFFVPET  328
               GWR    +  +     L++   F+PE+
Sbjct  166  NSDGWRIPLGLQLVPALL-LIIGLLFLPES  194



Lambda      K        H        a         alpha
   0.321    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 937117888


Query= TCONS_00021768

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            107     8e-26
CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         71.5    1e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 107 bits (269),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 82/201 (41%), Gaps = 3/201 (1%)

Query  158  YCLMGGGMTPILAAGFNQVSESYGVSTQKVAYTTGLYMLGLGVGSVIMSPTAILWGKRPV  217
              L   G + +  A    ++E  G+S  ++     L+ LG  +   +    +  +G+R V
Sbjct  5    AFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRV  64

Query  218  YLLGATLFVLSAVWCALSPNYPSLVIARIFQGIAVSTVECLPSATIAEIYFLHERAYRVG  277
             L+G  LF L  +    + +   L++ R+ QG+    +     A IA+ +   ER   +G
Sbjct  65   LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALG  124

Query  278  IYTLLLLGGKNLVPLVSAAIIGRMGWRWVFWIVAIIVGACLVLLFFFVPETFWDRTPRPR  337
            + +     G  L PL+   +    GWR  F I+AI+     VLL    P      + RP+
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPP---ESKRPK  181

Query  338  RSHKRPHPMRSVSDLLRGRQL  358
             + +    +      L    +
Sbjct  182  PAEEARLSLIVAWKALLRDPV  202


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 71.5 bits (176),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/150 (23%), Positives = 59/150 (39%), Gaps = 17/150 (11%)

Query  190  TTGLYMLGLGVGSVIMSPTAILWGKRPVYLLGATLFVLSAVWCALSPNYPS---LVIARI  246
               ++ +G  +GS+        +G++   L+   LFV+ AV    +    S   L++ R+
Sbjct  51   IVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRV  110

Query  247  FQGIAVSTVECLPSATIAEIYFLHERAYRVGIYTLLLLGGKNLVPLVSAAIIGR------  300
              GI V     L    I+EI     R     +Y L +  G     ++ A I G       
Sbjct  111  LVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFG-----ILLAYIFGLGLNKTS  165

Query  301  --MGWRWVFWIVAIIVGACLVLLFFFVPET  328
               GWR    +  +     L++   F+PE+
Sbjct  166  NSDGWRIPLGLQLVPALL-LIIGLLFLPES  194



Lambda      K        H        a         alpha
   0.321    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 937117888


Query= TCONS_00026755

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            107     8e-26
CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         71.5    1e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 107 bits (269),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 82/201 (41%), Gaps = 3/201 (1%)

Query  158  YCLMGGGMTPILAAGFNQVSESYGVSTQKVAYTTGLYMLGLGVGSVIMSPTAILWGKRPV  217
              L   G + +  A    ++E  G+S  ++     L+ LG  +   +    +  +G+R V
Sbjct  5    AFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRV  64

Query  218  YLLGATLFVLSAVWCALSPNYPSLVIARIFQGIAVSTVECLPSATIAEIYFLHERAYRVG  277
             L+G  LF L  +    + +   L++ R+ QG+    +     A IA+ +   ER   +G
Sbjct  65   LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALG  124

Query  278  IYTLLLLGGKNLVPLVSAAIIGRMGWRWVFWIVAIIVGACLVLLFFFVPETFWDRTPRPR  337
            + +     G  L PL+   +    GWR  F I+AI+     VLL    P      + RP+
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPP---ESKRPK  181

Query  338  RSHKRPHPMRSVSDLLRGRQL  358
             + +    +      L    +
Sbjct  182  PAEEARLSLIVAWKALLRDPV  202


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 71.5 bits (176),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/150 (23%), Positives = 59/150 (39%), Gaps = 17/150 (11%)

Query  190  TTGLYMLGLGVGSVIMSPTAILWGKRPVYLLGATLFVLSAVWCALSPNYPS---LVIARI  246
               ++ +G  +GS+        +G++   L+   LFV+ AV    +    S   L++ R+
Sbjct  51   IVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRV  110

Query  247  FQGIAVSTVECLPSATIAEIYFLHERAYRVGIYTLLLLGGKNLVPLVSAAIIGR------  300
              GI V     L    I+EI     R     +Y L +  G     ++ A I G       
Sbjct  111  LVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFG-----ILLAYIFGLGLNKTS  165

Query  301  --MGWRWVFWIVAIIVGACLVLLFFFVPET  328
               GWR    +  +     L++   F+PE+
Sbjct  166  NSDGWRIPLGLQLVPALL-LIIGLLFLPES  194



Lambda      K        H        a         alpha
   0.321    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 937117888


Query= TCONS_00021769

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            107     8e-26
CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         71.5    1e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 107 bits (269),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 82/201 (41%), Gaps = 3/201 (1%)

Query  158  YCLMGGGMTPILAAGFNQVSESYGVSTQKVAYTTGLYMLGLGVGSVIMSPTAILWGKRPV  217
              L   G + +  A    ++E  G+S  ++     L+ LG  +   +    +  +G+R V
Sbjct  5    AFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRV  64

Query  218  YLLGATLFVLSAVWCALSPNYPSLVIARIFQGIAVSTVECLPSATIAEIYFLHERAYRVG  277
             L+G  LF L  +    + +   L++ R+ QG+    +     A IA+ +   ER   +G
Sbjct  65   LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALG  124

Query  278  IYTLLLLGGKNLVPLVSAAIIGRMGWRWVFWIVAIIVGACLVLLFFFVPETFWDRTPRPR  337
            + +     G  L PL+   +    GWR  F I+AI+     VLL    P      + RP+
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPP---ESKRPK  181

Query  338  RSHKRPHPMRSVSDLLRGRQL  358
             + +    +      L    +
Sbjct  182  PAEEARLSLIVAWKALLRDPV  202


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 71.5 bits (176),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/150 (23%), Positives = 59/150 (39%), Gaps = 17/150 (11%)

Query  190  TTGLYMLGLGVGSVIMSPTAILWGKRPVYLLGATLFVLSAVWCALSPNYPS---LVIARI  246
               ++ +G  +GS+        +G++   L+   LFV+ AV    +    S   L++ R+
Sbjct  51   IVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRV  110

Query  247  FQGIAVSTVECLPSATIAEIYFLHERAYRVGIYTLLLLGGKNLVPLVSAAIIGR------  300
              GI V     L    I+EI     R     +Y L +  G     ++ A I G       
Sbjct  111  LVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFG-----ILLAYIFGLGLNKTS  165

Query  301  --MGWRWVFWIVAIIVGACLVLLFFFVPET  328
               GWR    +  +     L++   F+PE+
Sbjct  166  NSDGWRIPLGLQLVPALL-LIIGLLFLPES  194



Lambda      K        H        a         alpha
   0.321    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 937117888


Query= TCONS_00026756

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            107     8e-26
CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         71.5    1e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 107 bits (269),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 82/201 (41%), Gaps = 3/201 (1%)

Query  158  YCLMGGGMTPILAAGFNQVSESYGVSTQKVAYTTGLYMLGLGVGSVIMSPTAILWGKRPV  217
              L   G + +  A    ++E  G+S  ++     L+ LG  +   +    +  +G+R V
Sbjct  5    AFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRV  64

Query  218  YLLGATLFVLSAVWCALSPNYPSLVIARIFQGIAVSTVECLPSATIAEIYFLHERAYRVG  277
             L+G  LF L  +    + +   L++ R+ QG+    +     A IA+ +   ER   +G
Sbjct  65   LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALG  124

Query  278  IYTLLLLGGKNLVPLVSAAIIGRMGWRWVFWIVAIIVGACLVLLFFFVPETFWDRTPRPR  337
            + +     G  L PL+   +    GWR  F I+AI+     VLL    P      + RP+
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPP---ESKRPK  181

Query  338  RSHKRPHPMRSVSDLLRGRQL  358
             + +    +      L    +
Sbjct  182  PAEEARLSLIVAWKALLRDPV  202


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 71.5 bits (176),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/150 (23%), Positives = 59/150 (39%), Gaps = 17/150 (11%)

Query  190  TTGLYMLGLGVGSVIMSPTAILWGKRPVYLLGATLFVLSAVWCALSPNYPS---LVIARI  246
               ++ +G  +GS+        +G++   L+   LFV+ AV    +    S   L++ R+
Sbjct  51   IVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRV  110

Query  247  FQGIAVSTVECLPSATIAEIYFLHERAYRVGIYTLLLLGGKNLVPLVSAAIIGR------  300
              GI V     L    I+EI     R     +Y L +  G     ++ A I G       
Sbjct  111  LVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFG-----ILLAYIFGLGLNKTS  165

Query  301  --MGWRWVFWIVAIIVGACLVLLFFFVPET  328
               GWR    +  +     L++   F+PE+
Sbjct  166  NSDGWRIPLGLQLVPALL-LIIGLLFLPES  194



Lambda      K        H        a         alpha
   0.321    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 937117888


Query= TCONS_00021770

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            101     4e-24
CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         69.2    5e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 101 bits (254),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 42/171 (25%), Positives = 73/171 (43%), Gaps = 0/171 (0%)

Query  14   YCLMGGGMTPILAAGFNQVSESYGVSTQKVAYTTGLYMLGLGVGSVIMSPTAILWGKRPV  73
              L   G + +  A    ++E  G+S  ++     L+ LG  +   +    +  +G+R V
Sbjct  5    AFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRV  64

Query  74   YLLGATLFVLSAVWCALSPNYPSLVIARIFQGIAVSTVECLPSATIAEIYFLHERAYRVG  133
             L+G  LF L  +    + +   L++ R+ QG+    +     A IA+ +   ER   +G
Sbjct  65   LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALG  124

Query  134  IYTLLLLGGKNLVPLVSAAIIGRMGWRWVFWIVAIIVGACLVLLFFFVPET  184
            + +     G  L PL+   +    GWR  F I+AI+     VLL    P  
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPP  175


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 69.2 bits (170),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 34/150 (23%), Positives = 59/150 (39%), Gaps = 17/150 (11%)

Query  46   TTGLYMLGLGVGSVIMSPTAILWGKRPVYLLGATLFVLSAVWCALSPNYPS---LVIARI  102
               ++ +G  +GS+        +G++   L+   LFV+ AV    +    S   L++ R+
Sbjct  51   IVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRV  110

Query  103  FQGIAVSTVECLPSATIAEIYFLHERAYRVGIYTLLLLGGKNLVPLVSAAIIGR------  156
              GI V     L    I+EI     R     +Y L +  G     ++ A I G       
Sbjct  111  LVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFG-----ILLAYIFGLGLNKTS  165

Query  157  --MGWRWVFWIVAIIVGACLVLLFFFVPET  184
               GWR    +  +     L++   F+PE+
Sbjct  166  NSDGWRIPLGLQLVPALL-LIIGLLFLPES  194



Lambda      K        H        a         alpha
   0.323    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688900030


Query= TCONS_00021771

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            107     8e-26
CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         71.5    1e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 107 bits (269),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 82/201 (41%), Gaps = 3/201 (1%)

Query  158  YCLMGGGMTPILAAGFNQVSESYGVSTQKVAYTTGLYMLGLGVGSVIMSPTAILWGKRPV  217
              L   G + +  A    ++E  G+S  ++     L+ LG  +   +    +  +G+R V
Sbjct  5    AFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRV  64

Query  218  YLLGATLFVLSAVWCALSPNYPSLVIARIFQGIAVSTVECLPSATIAEIYFLHERAYRVG  277
             L+G  LF L  +    + +   L++ R+ QG+    +     A IA+ +   ER   +G
Sbjct  65   LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALG  124

Query  278  IYTLLLLGGKNLVPLVSAAIIGRMGWRWVFWIVAIIVGACLVLLFFFVPETFWDRTPRPR  337
            + +     G  L PL+   +    GWR  F I+AI+     VLL    P      + RP+
Sbjct  125  LVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPP---ESKRPK  181

Query  338  RSHKRPHPMRSVSDLLRGRQL  358
             + +    +      L    +
Sbjct  182  PAEEARLSLIVAWKALLRDPV  202


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 71.5 bits (176),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/150 (23%), Positives = 59/150 (39%), Gaps = 17/150 (11%)

Query  190  TTGLYMLGLGVGSVIMSPTAILWGKRPVYLLGATLFVLSAVWCALSPNYPS---LVIARI  246
               ++ +G  +GS+        +G++   L+   LFV+ AV    +    S   L++ R+
Sbjct  51   IVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRV  110

Query  247  FQGIAVSTVECLPSATIAEIYFLHERAYRVGIYTLLLLGGKNLVPLVSAAIIGR------  300
              GI V     L    I+EI     R     +Y L +  G     ++ A I G       
Sbjct  111  LVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFG-----ILLAYIFGLGLNKTS  165

Query  301  --MGWRWVFWIVAIIVGACLVLLFFFVPET  328
               GWR    +  +     L++   F+PE+
Sbjct  166  NSDGWRIPLGLQLVPALL-LIIGLLFLPES  194



Lambda      K        H        a         alpha
   0.321    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 937117888


Query= TCONS_00026757

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  97.8    4e-25


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 97.8 bits (244),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 16/119 (13%)

Query  121  ALRRIIMNVFGNAMKYT-ESGRVSVHLEVTEASESRSRRHGVEELVTLTVSDTGKGISEA  179
             LR+++ N+  NA+K+  ++G ++V L                  +TLTV D G GI   
Sbjct  5    RLRQVLSNLLDNALKHAAKAGEITVTLSE-------------GGELTLTVEDNGIGIPPE  51

Query  180  FLRGRLFTPFAQEDTLAV-GTGLGLSIVRSLVKALNGIINVHSRPGEGTTVKVSLPLTR  237
             L  R+F PF+  D     GTGLGLSIVR LV+ L G I V S PG GTTV ++LPL +
Sbjct  52   DLP-RIFEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLAQ  109



Lambda      K        H        a         alpha
   0.315    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00021772

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425473 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic...  194     1e-59


>CDD:425473 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain. 
 
Length=343

 Score = 194 bits (496),  Expect = 1e-59, Method: Composition-based stats.
 Identities = 88/273 (32%), Positives = 116/273 (42%), Gaps = 31/273 (11%)

Query  102  GCPRTALQNIVDKLHTDHGIAVTCGFEIEVIFLRPDTD--------PSTGETRYLPAVTN  153
              PR+ L+  + +L    G+    G E+E        D        P   E  Y PA   
Sbjct  1    RDPRSILKRALARL-ASLGLTAYVGPELEFFLFDRVEDGNPNGPFYPPDSEGGYRPADKG  59

Query  154  HSWSQMTSDTRRMLPLLEEIADTLTAIGIPLEQFHSESAPGQFEFVLPRNSPLPAVDTLL  213
              +    +       L  EI D L A+GI +E  H E APGQ E     +  L A D   
Sbjct  60   GYFD--VAPVDSAQDLRREIVDALEAMGIEVEASHHEVAPGQHEIDFRFDDALKAADNAQ  117

Query  214  KARQVVANVAERHGLRATLHPRPLPNFAGTASHAHVSISPSTN-----ED----------  258
              + VV NVA +HGL AT  P+P     G+  H H S+           D          
Sbjct  118  TFKYVVKNVARKHGLTATFMPKPFFGDNGSGMHVHQSLWKDGKNLFADPDGEYGLSETAR  177

Query  259  SFLAGVLAHFPALLACTLAQETSYDRVKSGLWAGSEWVAWGTQNREAPVRKIEPG----H  314
             F+AG+L H PAL A T     SY R+  G  A   ++AWG +NR A +R          
Sbjct  178  HFIAGILKHAPALTALTNPTVNSYKRLVPGYEAPV-YLAWGARNRSAALRIPAGSPKARR  236

Query  315  WELKSLDGLANMYVAMAAFLGAGYLGLEHKIPL  347
             E++S D  AN Y+A AA L AG  G+E+KI  
Sbjct  237  VEVRSPDPDANPYLAFAALLAAGLDGIENKIDP  269



Lambda      K        H        a         alpha
   0.320    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 446726320


Query= TCONS_00021773

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425473 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic...  194     1e-59


>CDD:425473 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain. 
 
Length=343

 Score = 194 bits (496),  Expect = 1e-59, Method: Composition-based stats.
 Identities = 88/273 (32%), Positives = 116/273 (42%), Gaps = 31/273 (11%)

Query  102  GCPRTALQNIVDKLHTDHGIAVTCGFEIEVIFLRPDTD--------PSTGETRYLPAVTN  153
              PR+ L+  + +L    G+    G E+E        D        P   E  Y PA   
Sbjct  1    RDPRSILKRALARL-ASLGLTAYVGPELEFFLFDRVEDGNPNGPFYPPDSEGGYRPADKG  59

Query  154  HSWSQMTSDTRRMLPLLEEIADTLTAIGIPLEQFHSESAPGQFEFVLPRNSPLPAVDTLL  213
              +    +       L  EI D L A+GI +E  H E APGQ E     +  L A D   
Sbjct  60   GYFD--VAPVDSAQDLRREIVDALEAMGIEVEASHHEVAPGQHEIDFRFDDALKAADNAQ  117

Query  214  KARQVVANVAERHGLRATLHPRPLPNFAGTASHAHVSISPSTN-----ED----------  258
              + VV NVA +HGL AT  P+P     G+  H H S+           D          
Sbjct  118  TFKYVVKNVARKHGLTATFMPKPFFGDNGSGMHVHQSLWKDGKNLFADPDGEYGLSETAR  177

Query  259  SFLAGVLAHFPALLACTLAQETSYDRVKSGLWAGSEWVAWGTQNREAPVRKIEPG----H  314
             F+AG+L H PAL A T     SY R+  G  A   ++AWG +NR A +R          
Sbjct  178  HFIAGILKHAPALTALTNPTVNSYKRLVPGYEAPV-YLAWGARNRSAALRIPAGSPKARR  236

Query  315  WELKSLDGLANMYVAMAAFLGAGYLGLEHKIPL  347
             E++S D  AN Y+A AA L AG  G+E+KI  
Sbjct  237  VEVRSPDPDANPYLAFAALLAAGLDGIENKIDP  269



Lambda      K        H        a         alpha
   0.320    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 446726320


Query= TCONS_00021774

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425473 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic...  194     1e-59


>CDD:425473 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain. 
 
Length=343

 Score = 194 bits (496),  Expect = 1e-59, Method: Composition-based stats.
 Identities = 88/273 (32%), Positives = 116/273 (42%), Gaps = 31/273 (11%)

Query  102  GCPRTALQNIVDKLHTDHGIAVTCGFEIEVIFLRPDTD--------PSTGETRYLPAVTN  153
              PR+ L+  + +L    G+    G E+E        D        P   E  Y PA   
Sbjct  1    RDPRSILKRALARL-ASLGLTAYVGPELEFFLFDRVEDGNPNGPFYPPDSEGGYRPADKG  59

Query  154  HSWSQMTSDTRRMLPLLEEIADTLTAIGIPLEQFHSESAPGQFEFVLPRNSPLPAVDTLL  213
              +    +       L  EI D L A+GI +E  H E APGQ E     +  L A D   
Sbjct  60   GYFD--VAPVDSAQDLRREIVDALEAMGIEVEASHHEVAPGQHEIDFRFDDALKAADNAQ  117

Query  214  KARQVVANVAERHGLRATLHPRPLPNFAGTASHAHVSISPSTN-----ED----------  258
              + VV NVA +HGL AT  P+P     G+  H H S+           D          
Sbjct  118  TFKYVVKNVARKHGLTATFMPKPFFGDNGSGMHVHQSLWKDGKNLFADPDGEYGLSETAR  177

Query  259  SFLAGVLAHFPALLACTLAQETSYDRVKSGLWAGSEWVAWGTQNREAPVRKIEPG----H  314
             F+AG+L H PAL A T     SY R+  G  A   ++AWG +NR A +R          
Sbjct  178  HFIAGILKHAPALTALTNPTVNSYKRLVPGYEAPV-YLAWGARNRSAALRIPAGSPKARR  236

Query  315  WELKSLDGLANMYVAMAAFLGAGYLGLEHKIPL  347
             E++S D  AN Y+A AA L AG  G+E+KI  
Sbjct  237  VEVRSPDPDANPYLAFAALLAAGLDGIENKIDP  269



Lambda      K        H        a         alpha
   0.320    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 446726320


Query= TCONS_00026758

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  97.8    4e-25


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 97.8 bits (244),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 16/119 (13%)

Query  121  ALRRIIMNVFGNAMKYT-ESGRVSVHLEVTEASESRSRRHGVEELVTLTVSDTGKGISEA  179
             LR+++ N+  NA+K+  ++G ++V L                  +TLTV D G GI   
Sbjct  5    RLRQVLSNLLDNALKHAAKAGEITVTLSE-------------GGELTLTVEDNGIGIPPE  51

Query  180  FLRGRLFTPFAQEDTLAV-GTGLGLSIVRSLVKALNGIINVHSRPGEGTTVKVSLPLTR  237
             L  R+F PF+  D     GTGLGLSIVR LV+ L G I V S PG GTTV ++LPL +
Sbjct  52   DLP-RIFEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLAQ  109



Lambda      K        H        a         alpha
   0.315    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00026759

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  97.8    6e-25
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  86.4    6e-21


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 97.8 bits (244),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 16/119 (13%)

Query  121  ALRRIIMNVFGNAMKYT-ESGRVSVHLEVTEASESRSRRHGVEELVTLTVSDTGKGISEA  179
             LR+++ N+  NA+K+  ++G ++V L                  +TLTV D G GI   
Sbjct  5    RLRQVLSNLLDNALKHAAKAGEITVTLSE-------------GGELTLTVEDNGIGIPPE  51

Query  180  FLRGRLFTPFAQEDTLAV-GTGLGLSIVRSLVKALNGIINVHSRPGEGTTVKVSLPLTR  237
             L  R+F PF+  D     GTGLGLSIVR LV+ L G I V S PG GTTV ++LPL +
Sbjct  52   DLP-RIFEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLAQ  109


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 86.4 bits (215),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 9/114 (8%)

Query  482  VLVVDDNSINLNLMLTFMKKQELEVLDSAENGKVAVDAVERMQQGYDLIFMDISMPVMNG  541
            VL+VDD+ +   L+   ++K+   V   A++GK A++ ++  ++  DLI +DI+MP M+G
Sbjct  1    VLIVDDDPLIRELLRQLLEKEGYVV-AEADDGKEALELLK--EERPDLILLDINMPGMDG  57

Query  542  FEATRAIRALEKERDGCGPATIIALTGLSSSRDESEALTSGVDLFLTKPVSFKE  595
             E  + IR  +       P  +I LT      D  EAL +G D FL+KP    E
Sbjct  58   LELLKRIRRRDPT----TP--VIILTAHGDEDDAVEALEAGADDFLSKPFDPDE  105



Lambda      K        H        a         alpha
   0.314    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790552412


Query= TCONS_00026760

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  97.8    6e-25
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  86.4    6e-21


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 97.8 bits (244),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 16/119 (13%)

Query  121  ALRRIIMNVFGNAMKYT-ESGRVSVHLEVTEASESRSRRHGVEELVTLTVSDTGKGISEA  179
             LR+++ N+  NA+K+  ++G ++V L                  +TLTV D G GI   
Sbjct  5    RLRQVLSNLLDNALKHAAKAGEITVTLSE-------------GGELTLTVEDNGIGIPPE  51

Query  180  FLRGRLFTPFAQEDTLAV-GTGLGLSIVRSLVKALNGIINVHSRPGEGTTVKVSLPLTR  237
             L  R+F PF+  D     GTGLGLSIVR LV+ L G I V S PG GTTV ++LPL +
Sbjct  52   DLP-RIFEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLAQ  109


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 86.4 bits (215),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 9/114 (8%)

Query  482  VLVVDDNSINLNLMLTFMKKQELEVLDSAENGKVAVDAVERMQQGYDLIFMDISMPVMNG  541
            VL+VDD+ +   L+   ++K+   V   A++GK A++ ++  ++  DLI +DI+MP M+G
Sbjct  1    VLIVDDDPLIRELLRQLLEKEGYVV-AEADDGKEALELLK--EERPDLILLDINMPGMDG  57

Query  542  FEATRAIRALEKERDGCGPATIIALTGLSSSRDESEALTSGVDLFLTKPVSFKE  595
             E  + IR  +       P  +I LT      D  EAL +G D FL+KP    E
Sbjct  58   LELLKRIRRRDPT----TP--VIILTAHGDEDDAVEALEAGADDFLSKPFDPDE  105



Lambda      K        H        a         alpha
   0.314    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790552412


Query= TCONS_00021776

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  97.8    6e-25
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  86.4    6e-21


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 97.8 bits (244),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 16/119 (13%)

Query  121  ALRRIIMNVFGNAMKYT-ESGRVSVHLEVTEASESRSRRHGVEELVTLTVSDTGKGISEA  179
             LR+++ N+  NA+K+  ++G ++V L                  +TLTV D G GI   
Sbjct  5    RLRQVLSNLLDNALKHAAKAGEITVTLSE-------------GGELTLTVEDNGIGIPPE  51

Query  180  FLRGRLFTPFAQEDTLAV-GTGLGLSIVRSLVKALNGIINVHSRPGEGTTVKVSLPLTR  237
             L  R+F PF+  D     GTGLGLSIVR LV+ L G I V S PG GTTV ++LPL +
Sbjct  52   DLP-RIFEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLAQ  109


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 86.4 bits (215),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 9/114 (8%)

Query  482  VLVVDDNSINLNLMLTFMKKQELEVLDSAENGKVAVDAVERMQQGYDLIFMDISMPVMNG  541
            VL+VDD+ +   L+   ++K+   V   A++GK A++ ++  ++  DLI +DI+MP M+G
Sbjct  1    VLIVDDDPLIRELLRQLLEKEGYVV-AEADDGKEALELLK--EERPDLILLDINMPGMDG  57

Query  542  FEATRAIRALEKERDGCGPATIIALTGLSSSRDESEALTSGVDLFLTKPVSFKE  595
             E  + IR  +       P  +I LT      D  EAL +G D FL+KP    E
Sbjct  58   LELLKRIRRRDPT----TP--VIILTAHGDEDDAVEALEAGADDFLSKPFDPDE  105



Lambda      K        H        a         alpha
   0.314    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790552412


Query= TCONS_00021775

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  97.8    6e-25
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  86.4    6e-21


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 97.8 bits (244),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 16/119 (13%)

Query  121  ALRRIIMNVFGNAMKYT-ESGRVSVHLEVTEASESRSRRHGVEELVTLTVSDTGKGISEA  179
             LR+++ N+  NA+K+  ++G ++V L                  +TLTV D G GI   
Sbjct  5    RLRQVLSNLLDNALKHAAKAGEITVTLSE-------------GGELTLTVEDNGIGIPPE  51

Query  180  FLRGRLFTPFAQEDTLAV-GTGLGLSIVRSLVKALNGIINVHSRPGEGTTVKVSLPLTR  237
             L  R+F PF+  D     GTGLGLSIVR LV+ L G I V S PG GTTV ++LPL +
Sbjct  52   DLP-RIFEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLAQ  109


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 86.4 bits (215),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 9/114 (8%)

Query  482  VLVVDDNSINLNLMLTFMKKQELEVLDSAENGKVAVDAVERMQQGYDLIFMDISMPVMNG  541
            VL+VDD+ +   L+   ++K+   V   A++GK A++ ++  ++  DLI +DI+MP M+G
Sbjct  1    VLIVDDDPLIRELLRQLLEKEGYVV-AEADDGKEALELLK--EERPDLILLDINMPGMDG  57

Query  542  FEATRAIRALEKERDGCGPATIIALTGLSSSRDESEALTSGVDLFLTKPVSFKE  595
             E  + IR  +       P  +I LT      D  EAL +G D FL+KP    E
Sbjct  58   LELLKRIRRRDPT----TP--VIILTAHGDEDDAVEALEAGADDFLSKPFDPDE  105



Lambda      K        H        a         alpha
   0.314    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0770    0.140     1.90     42.6     43.6 

Effective search space used: 790552412


Query= TCONS_00021777

Length=1275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  99.7    3e-25
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  89.9    8e-22


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 99.7 bits (249),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 16/119 (13%)

Query  775  ALRRIIMNVFGNAMKYT-ESGRVSVHLEVTEASESRSRRHGVEELVTLTVSDTGKGISEA  833
             LR+++ N+  NA+K+  ++G ++V L                  +TLTV D G GI   
Sbjct  5    RLRQVLSNLLDNALKHAAKAGEITVTLSE-------------GGELTLTVEDNGIGIPPE  51

Query  834  FLRGRLFTPFAQEDTLAV-GTGLGLSIVRSLVKALNGIINVHSRPGEGTTVKVSLPLTR  891
             L  R+F PF+  D     GTGLGLSIVR LV+ L G I V S PG GTTV ++LPL +
Sbjct  52   DLP-RIFEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLAQ  109


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 89.9 bits (224),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 9/114 (8%)

Query  1136  VLVVDDNSINLNLMLTFMKKQELEVLDSAENGKVAVDAVERMQQGYDLIFMDISMPVMNG  1195
             VL+VDD+ +   L+   ++K+   V   A++GK A++ ++  ++  DLI +DI+MP M+G
Sbjct  1     VLIVDDDPLIRELLRQLLEKEGYVV-AEADDGKEALELLK--EERPDLILLDINMPGMDG  57

Query  1196  FEATRAIRALEKERDGCGPATIIALTGLSSSRDESEALTSGVDLFLTKPVSFKE  1249
              E  + IR  +       P  +I LT      D  EAL +G D FL+KP    E
Sbjct  58    LELLKRIRRRDPT----TP--VIILTAHGDEDDAVEALEAGADDFLSKPFDPDE  105



Lambda      K        H        a         alpha
   0.315    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1620258200


Query= TCONS_00026761

Length=1280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  99.7    3e-25
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  89.9    7e-22
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  68.0    1e-14


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 99.7 bits (249),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 16/119 (13%)

Query  780  ALRRIIMNVFGNAMKYT-ESGRVSVHLEVTEASESRSRRHGVEELVTLTVSDTGKGISEA  838
             LR+++ N+  NA+K+  ++G ++V L                  +TLTV D G GI   
Sbjct  5    RLRQVLSNLLDNALKHAAKAGEITVTLSE-------------GGELTLTVEDNGIGIPPE  51

Query  839  FLRGRLFTPFAQEDTLAV-GTGLGLSIVRSLVKALNGIINVHSRPGEGTTVKVSLPLTR  896
             L  R+F PF+  D     GTGLGLSIVR LV+ L G I V S PG GTTV ++LPL +
Sbjct  52   DLP-RIFEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLAQ  109


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 89.9 bits (224),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 9/114 (8%)

Query  1141  VLVVDDNSINLNLMLTFMKKQELEVLDSAENGKVAVDAVERMQQGYDLIFMDISMPVMNG  1200
             VL+VDD+ +   L+   ++K+   V   A++GK A++ ++  ++  DLI +DI+MP M+G
Sbjct  1     VLIVDDDPLIRELLRQLLEKEGYVV-AEADDGKEALELLK--EERPDLILLDINMPGMDG  57

Query  1201  FEATRAIRALEKERDGCGPATIIALTGLSSSRDESEALTSGVDLFLTKPVSFKE  1254
              E  + IR  +       P  +I LT      D  EAL +G D FL+KP    E
Sbjct  58    LELLKRIRRRDPT----TP--VIILTAHGDEDDAVEALEAGADDFLSKPFDPDE  105


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 68.0 bits (167),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 27/63 (43%), Positives = 35/63 (56%), Gaps = 0/63 (0%)

Query  607  QKGDFIGSISHELRSPLHGILAATEFLHSTDLDEFQLSLLETINACGRTLLDTMNQVLDF  666
             K +F+ ++SHELR+PL  I    E L    LDE Q   LETI      LL  +N +LD 
Sbjct  1    AKSEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQREYLETILRSAERLLRLINDLLDL  60

Query  667  SKI  669
            S+I
Sbjct  61   SRI  63



Lambda      K        H        a         alpha
   0.315    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1627141200


Query= TCONS_00026762

Length=1091
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  99.7    2e-25
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  89.9    6e-22


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 99.7 bits (249),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 16/119 (13%)

Query  591  ALRRIIMNVFGNAMKYT-ESGRVSVHLEVTEASESRSRRHGVEELVTLTVSDTGKGISEA  649
             LR+++ N+  NA+K+  ++G ++V L                  +TLTV D G GI   
Sbjct  5    RLRQVLSNLLDNALKHAAKAGEITVTLSE-------------GGELTLTVEDNGIGIPPE  51

Query  650  FLRGRLFTPFAQEDTLAV-GTGLGLSIVRSLVKALNGIINVHSRPGEGTTVKVSLPLTR  707
             L  R+F PF+  D     GTGLGLSIVR LV+ L G I V S PG GTTV ++LPL +
Sbjct  52   DLP-RIFEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLAQ  109


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 89.9 bits (224),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 9/114 (8%)

Query  952   VLVVDDNSINLNLMLTFMKKQELEVLDSAENGKVAVDAVERMQQGYDLIFMDISMPVMNG  1011
             VL+VDD+ +   L+   ++K+   V   A++GK A++ ++  ++  DLI +DI+MP M+G
Sbjct  1     VLIVDDDPLIRELLRQLLEKEGYVV-AEADDGKEALELLK--EERPDLILLDINMPGMDG  57

Query  1012  FEATRAIRALEKERDGCGPATIIALTGLSSSRDESEALTSGVDLFLTKPVSFKE  1065
              E  + IR  +       P  +I LT      D  EAL +G D FL+KP    E
Sbjct  58    LELLKRIRRRDPT----TP--VIILTAHGDEDDAVEALEAGADDFLSKPFDPDE  105



Lambda      K        H        a         alpha
   0.315    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1387860572


Query= TCONS_00021778

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00026763

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  502     5e-178


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 502 bits (1295),  Expect = 5e-178, Method: Composition-based stats.
 Identities = 174/407 (43%), Positives = 251/407 (62%), Gaps = 7/407 (2%)

Query  1    MKWDALIRAARSDLAQILTHETGKPLAESYGEIDYATGFTWWFAGEAERIHGTVSVPSAP  60
             K   L+   + +LA++ T E GKPLAE+ GE+D A     ++AG A R+ G   +PS P
Sbjct  58   RKAADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGET-LPSDP  116

Query  61   NRRVFTVKQPIGVAAALVPWNFPIAMVLRKAGAAFAAGCTMIVKPSPETPITTLVLAHLA  120
             R  +T ++P+GV  A+ PWNFP+ +   K   A AAG T+++KPS  TP+T L+LA L 
Sbjct  117  GRLAYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELF  176

Query  121  QRAGFPAGVLNVLTTDLENTPSLSEALCKHPLVKKVTFTGSTRVGKLIAAHCAEGLKKVT  180
            + AG PAGVLNV+T        + EAL +HP V+KV+FTGST VG+ IA   A+ LK+VT
Sbjct  177  EEAGLPAGVLNVVTGS---GAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVT  233

Query  181  LELGGNCPFIVFDDANLDQALDQLMALKWRHAGQACITANRVYVQAGIYDKFAQMLKERT  240
            LELGG  P IV +DA+LD A++  +   + +AGQ C   +R+ V   IYD+F + L E  
Sbjct  234  LELGGKNPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAA  293

Query  241  EKLVVGHGAQEGTTMGPLTTPRGLDKAREQVEDARRLGADVILGGGQVPGQKGYFFQPTI  300
            +KL VG      T MGPL +   L++  + VEDA+  GA ++ GG       GYF +PT+
Sbjct  294  KKLKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLD-NGYFVEPTV  352

Query  301  LTGMKEEMLVSREETFAPIAALYRFETEEEAVRMANNTSMGLASYAFTKNIDRMWRMLEN  360
            L  +  +M +++EE F P+ ++ RF+ EEEA+ +AN+T  GLA+  FT +++R  R+   
Sbjct  353  LANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARR  412

Query  361  LEAGMIGMNTGNASAAES-PFGGIKESGYGKESGKEVAVNEYLITKT  406
            LEAGM+ +N      A+  PFGG K+SG+G+E G    + EY   KT
Sbjct  413  LEAGMVWINDYTTGDADGLPFGGFKQSGFGREGGPY-GLEEYTEVKT  458



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00021779

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  502     5e-178


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 502 bits (1295),  Expect = 5e-178, Method: Composition-based stats.
 Identities = 174/407 (43%), Positives = 251/407 (62%), Gaps = 7/407 (2%)

Query  1    MKWDALIRAARSDLAQILTHETGKPLAESYGEIDYATGFTWWFAGEAERIHGTVSVPSAP  60
             K   L+   + +LA++ T E GKPLAE+ GE+D A     ++AG A R+ G   +PS P
Sbjct  58   RKAADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGET-LPSDP  116

Query  61   NRRVFTVKQPIGVAAALVPWNFPIAMVLRKAGAAFAAGCTMIVKPSPETPITTLVLAHLA  120
             R  +T ++P+GV  A+ PWNFP+ +   K   A AAG T+++KPS  TP+T L+LA L 
Sbjct  117  GRLAYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELF  176

Query  121  QRAGFPAGVLNVLTTDLENTPSLSEALCKHPLVKKVTFTGSTRVGKLIAAHCAEGLKKVT  180
            + AG PAGVLNV+T        + EAL +HP V+KV+FTGST VG+ IA   A+ LK+VT
Sbjct  177  EEAGLPAGVLNVVTGS---GAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVT  233

Query  181  LELGGNCPFIVFDDANLDQALDQLMALKWRHAGQACITANRVYVQAGIYDKFAQMLKERT  240
            LELGG  P IV +DA+LD A++  +   + +AGQ C   +R+ V   IYD+F + L E  
Sbjct  234  LELGGKNPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAA  293

Query  241  EKLVVGHGAQEGTTMGPLTTPRGLDKAREQVEDARRLGADVILGGGQVPGQKGYFFQPTI  300
            +KL VG      T MGPL +   L++  + VEDA+  GA ++ GG       GYF +PT+
Sbjct  294  KKLKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLD-NGYFVEPTV  352

Query  301  LTGMKEEMLVSREETFAPIAALYRFETEEEAVRMANNTSMGLASYAFTKNIDRMWRMLEN  360
            L  +  +M +++EE F P+ ++ RF+ EEEA+ +AN+T  GLA+  FT +++R  R+   
Sbjct  353  LANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARR  412

Query  361  LEAGMIGMNTGNASAAES-PFGGIKESGYGKESGKEVAVNEYLITKT  406
            LEAGM+ +N      A+  PFGG K+SG+G+E G    + EY   KT
Sbjct  413  LEAGMVWINDYTTGDADGLPFGGFKQSGFGREGGPY-GLEEYTEVKT  458



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00026764

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  502     5e-178


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 502 bits (1295),  Expect = 5e-178, Method: Composition-based stats.
 Identities = 174/407 (43%), Positives = 251/407 (62%), Gaps = 7/407 (2%)

Query  1    MKWDALIRAARSDLAQILTHETGKPLAESYGEIDYATGFTWWFAGEAERIHGTVSVPSAP  60
             K   L+   + +LA++ T E GKPLAE+ GE+D A     ++AG A R+ G   +PS P
Sbjct  58   RKAADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGET-LPSDP  116

Query  61   NRRVFTVKQPIGVAAALVPWNFPIAMVLRKAGAAFAAGCTMIVKPSPETPITTLVLAHLA  120
             R  +T ++P+GV  A+ PWNFP+ +   K   A AAG T+++KPS  TP+T L+LA L 
Sbjct  117  GRLAYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELF  176

Query  121  QRAGFPAGVLNVLTTDLENTPSLSEALCKHPLVKKVTFTGSTRVGKLIAAHCAEGLKKVT  180
            + AG PAGVLNV+T        + EAL +HP V+KV+FTGST VG+ IA   A+ LK+VT
Sbjct  177  EEAGLPAGVLNVVTGS---GAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVT  233

Query  181  LELGGNCPFIVFDDANLDQALDQLMALKWRHAGQACITANRVYVQAGIYDKFAQMLKERT  240
            LELGG  P IV +DA+LD A++  +   + +AGQ C   +R+ V   IYD+F + L E  
Sbjct  234  LELGGKNPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAA  293

Query  241  EKLVVGHGAQEGTTMGPLTTPRGLDKAREQVEDARRLGADVILGGGQVPGQKGYFFQPTI  300
            +KL VG      T MGPL +   L++  + VEDA+  GA ++ GG       GYF +PT+
Sbjct  294  KKLKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLD-NGYFVEPTV  352

Query  301  LTGMKEEMLVSREETFAPIAALYRFETEEEAVRMANNTSMGLASYAFTKNIDRMWRMLEN  360
            L  +  +M +++EE F P+ ++ RF+ EEEA+ +AN+T  GLA+  FT +++R  R+   
Sbjct  353  LANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARR  412

Query  361  LEAGMIGMNTGNASAAES-PFGGIKESGYGKESGKEVAVNEYLITKT  406
            LEAGM+ +N      A+  PFGG K+SG+G+E G    + EY   KT
Sbjct  413  LEAGMVWINDYTTGDADGLPFGGFKQSGFGREGGPY-GLEEYTEVKT  458



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00021781

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428940 pfam06432, GPI2, Phosphatidylinositol N-acetylglucosam...  371     2e-129


>CDD:428940 pfam06432, GPI2, Phosphatidylinositol N-acetylglucosaminyltransferase. 
 Glycosylphosphatidylinositol (GPI) represents an 
important anchoring molecule for cell surface proteins. The 
first step in its synthesis is the transfer of N-acetylglucosamine 
(GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol 
(PI). This step involves products of three or four 
genes in both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, 
PIG A, PIG H and PIG C), respectively.
Length=267

 Score = 371 bits (954),  Expect = 2e-129, Method: Composition-based stats.
 Identities = 161/380 (42%), Positives = 194/380 (51%), Gaps = 124/380 (33%)

Query  7    PDNYTDTETFLDHLQRNPRVRPYDFWPLVADSTVIVQHVCSVAIFVCCFVGIVQERVSPV  66
            PDNYTD ETFL+ L+RNP VRPYD+WPLVADS VI QH+ SV IFV  FV I Q R+SPV
Sbjct  12   PDNYTD-ETFLEELRRNPNVRPYDYWPLVADSLVISQHLSSVVIFVLVFVYIYQGRLSPV  70

Query  67   SVVCWGSVGTAMGWILWDSWVWREHHAEQAPNAGRIADGDDGSSSSSAVSSVNPSSGATS  126
            S+V   SV T +G+ILWD WV +                                     
Sbjct  71   SLVLISSVLTLLGYILWDLWVGQ-------------------------------------  93

Query  127  RPVGPKDGQNEVHGLGLTISSGEPDGLLRRRSTGFSGEAYGPCEPGSPSHQASGGLSNMY  186
                                                                        
Sbjct       ------------------------------------------------------------  

Query  187  LHHGSQETDETSLLSSRNRQRLSTVKSAFLIYFSLLGLSPILKSLTKSTASDSIWAMSCW  246
                            R   RL T+KSA LI+F+LLGLSP+LK+LTKST+SDSIWA+S W
Sbjct  94   ---------------PRRSSRLKTLKSAILIFFTLLGLSPVLKTLTKSTSSDSIWALSFW  138

Query  247  LLIMNIFSFDYGSGEGAGATKFPASLSTNAAVMASTVLASRLPSTTHVFSLMLFSIEVFG  306
            LL++++F  DY  G      K  +SLSTNAA+ AS VLASRLPST HVF+L+LFSIE+F 
Sbjct  139  LLLLHLFFHDYSYG----NAKLSSSLSTNAALFASVVLASRLPSTLHVFALLLFSIELFA  194

Query  307  LFPIFRRQLRHTSWTGHVLLTLALVIVAGGAVGMTLRGGWTAAVVGSFLGSIMTAFAMGG  366
            LFPIFRR LRH SW  HV+LTLALV++A G +G             + L  ++  F    
Sbjct  195  LFPIFRRSLRHRSWRLHVVLTLALVLLASGLLGSLSG-------TLAVLYLLLVLFITFV  247

Query  367  CSWWLISLQKYKNVVTGPWD  386
            C WWLI LQKYKN + GPWD
Sbjct  248  CPWWLIRLQKYKNEIHGPWD  267



Lambda      K        H        a         alpha
   0.320    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00021782

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428940 pfam06432, GPI2, Phosphatidylinositol N-acetylglucosam...  371     2e-129


>CDD:428940 pfam06432, GPI2, Phosphatidylinositol N-acetylglucosaminyltransferase. 
 Glycosylphosphatidylinositol (GPI) represents an 
important anchoring molecule for cell surface proteins. The 
first step in its synthesis is the transfer of N-acetylglucosamine 
(GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol 
(PI). This step involves products of three or four 
genes in both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, 
PIG A, PIG H and PIG C), respectively.
Length=267

 Score = 371 bits (954),  Expect = 2e-129, Method: Composition-based stats.
 Identities = 161/380 (42%), Positives = 194/380 (51%), Gaps = 124/380 (33%)

Query  7    PDNYTDTETFLDHLQRNPRVRPYDFWPLVADSTVIVQHVCSVAIFVCCFVGIVQERVSPV  66
            PDNYTD ETFL+ L+RNP VRPYD+WPLVADS VI QH+ SV IFV  FV I Q R+SPV
Sbjct  12   PDNYTD-ETFLEELRRNPNVRPYDYWPLVADSLVISQHLSSVVIFVLVFVYIYQGRLSPV  70

Query  67   SVVCWGSVGTAMGWILWDSWVWREHHAEQAPNAGRIADGDDGSSSSSAVSSVNPSSGATS  126
            S+V   SV T +G+ILWD WV +                                     
Sbjct  71   SLVLISSVLTLLGYILWDLWVGQ-------------------------------------  93

Query  127  RPVGPKDGQNEVHGLGLTISSGEPDGLLRRRSTGFSGEAYGPCEPGSPSHQASGGLSNMY  186
                                                                        
Sbjct       ------------------------------------------------------------  

Query  187  LHHGSQETDETSLLSSRNRQRLSTVKSAFLIYFSLLGLSPILKSLTKSTASDSIWAMSCW  246
                            R   RL T+KSA LI+F+LLGLSP+LK+LTKST+SDSIWA+S W
Sbjct  94   ---------------PRRSSRLKTLKSAILIFFTLLGLSPVLKTLTKSTSSDSIWALSFW  138

Query  247  LLIMNIFSFDYGSGEGAGATKFPASLSTNAAVMASTVLASRLPSTTHVFSLMLFSIEVFG  306
            LL++++F  DY  G      K  +SLSTNAA+ AS VLASRLPST HVF+L+LFSIE+F 
Sbjct  139  LLLLHLFFHDYSYG----NAKLSSSLSTNAALFASVVLASRLPSTLHVFALLLFSIELFA  194

Query  307  LFPIFRRQLRHTSWTGHVLLTLALVIVAGGAVGMTLRGGWTAAVVGSFLGSIMTAFAMGG  366
            LFPIFRR LRH SW  HV+LTLALV++A G +G             + L  ++  F    
Sbjct  195  LFPIFRRSLRHRSWRLHVVLTLALVLLASGLLGSLSG-------TLAVLYLLLVLFITFV  247

Query  367  CSWWLISLQKYKNVVTGPWD  386
            C WWLI LQKYKN + GPWD
Sbjct  248  CPWWLIRLQKYKNEIHGPWD  267



Lambda      K        H        a         alpha
   0.320    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00021783

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428940 pfam06432, GPI2, Phosphatidylinositol N-acetylglucosam...  371     2e-129


>CDD:428940 pfam06432, GPI2, Phosphatidylinositol N-acetylglucosaminyltransferase. 
 Glycosylphosphatidylinositol (GPI) represents an 
important anchoring molecule for cell surface proteins. The 
first step in its synthesis is the transfer of N-acetylglucosamine 
(GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol 
(PI). This step involves products of three or four 
genes in both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, 
PIG A, PIG H and PIG C), respectively.
Length=267

 Score = 371 bits (954),  Expect = 2e-129, Method: Composition-based stats.
 Identities = 161/380 (42%), Positives = 194/380 (51%), Gaps = 124/380 (33%)

Query  7    PDNYTDTETFLDHLQRNPRVRPYDFWPLVADSTVIVQHVCSVAIFVCCFVGIVQERVSPV  66
            PDNYTD ETFL+ L+RNP VRPYD+WPLVADS VI QH+ SV IFV  FV I Q R+SPV
Sbjct  12   PDNYTD-ETFLEELRRNPNVRPYDYWPLVADSLVISQHLSSVVIFVLVFVYIYQGRLSPV  70

Query  67   SVVCWGSVGTAMGWILWDSWVWREHHAEQAPNAGRIADGDDGSSSSSAVSSVNPSSGATS  126
            S+V   SV T +G+ILWD WV +                                     
Sbjct  71   SLVLISSVLTLLGYILWDLWVGQ-------------------------------------  93

Query  127  RPVGPKDGQNEVHGLGLTISSGEPDGLLRRRSTGFSGEAYGPCEPGSPSHQASGGLSNMY  186
                                                                        
Sbjct       ------------------------------------------------------------  

Query  187  LHHGSQETDETSLLSSRNRQRLSTVKSAFLIYFSLLGLSPILKSLTKSTASDSIWAMSCW  246
                            R   RL T+KSA LI+F+LLGLSP+LK+LTKST+SDSIWA+S W
Sbjct  94   ---------------PRRSSRLKTLKSAILIFFTLLGLSPVLKTLTKSTSSDSIWALSFW  138

Query  247  LLIMNIFSFDYGSGEGAGATKFPASLSTNAAVMASTVLASRLPSTTHVFSLMLFSIEVFG  306
            LL++++F  DY  G      K  +SLSTNAA+ AS VLASRLPST HVF+L+LFSIE+F 
Sbjct  139  LLLLHLFFHDYSYG----NAKLSSSLSTNAALFASVVLASRLPSTLHVFALLLFSIELFA  194

Query  307  LFPIFRRQLRHTSWTGHVLLTLALVIVAGGAVGMTLRGGWTAAVVGSFLGSIMTAFAMGG  366
            LFPIFRR LRH SW  HV+LTLALV++A G +G             + L  ++  F    
Sbjct  195  LFPIFRRSLRHRSWRLHVVLTLALVLLASGLLGSLSG-------TLAVLYLLLVLFITFV  247

Query  367  CSWWLISLQKYKNVVTGPWD  386
            C WWLI LQKYKN + GPWD
Sbjct  248  CPWWLIRLQKYKNEIHGPWD  267



Lambda      K        H        a         alpha
   0.320    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00021784

Length=587
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  175     2e-52
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  115     2e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 175 bits (445),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 71/194 (37%), Positives = 98/194 (51%), Gaps = 29/194 (15%)

Query  154  TPIQAYAIPAVLTGHDLIAIAQTGSGKTAAFLIPVLSQLMGKAKKLAAPRPNLANGFDPS  213
            TPIQA AIPA+L G D++  A TGSGKT AFL+P L  L                     
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNG---------------  45

Query  214  VDAVRAEPLVLIVAPTRELSTQIFDEARRLCYRSMLRPCVVYGGAPVREQREELQKGCDI  273
                   P  L++APTREL+ QI++E ++L     L+   + GG   +EQ E+L KG DI
Sbjct  46   -------PQALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDI  97

Query  274  LIGTPGRLLDFMDKPHVLSLRRVKYTIIDEADELLLSDWESDFTRIMSGGDVNEDADHRY  333
            L+GTPGRLLD + +     L+ +K  ++DEA  LL   +  D   I+           + 
Sbjct  98   LVGTPGRLLDLLQERK--LLKNLKLLVLDEAHRLLDMGFGPDLEEILR----RLPKKRQI  151

Query  334  MMFSATFNRECRRL  347
            ++ SAT  R    L
Sbjct  152  LLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 115 bits (291),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query  383  KKQCLYDLLLAMPPSRTLIFVNTKIQADFLDDFLYNMGLPSTSIHSDRTQREREDALRSF  442
            K + L +LL      + LIF  TK   +  +  L   G+    +H D +Q ERE+ L  F
Sbjct  2    KLEALLELLKKERGGKVLIFSQTKKTLE-AELLLEKEGIKVARLHGDLSQEEREEILEDF  60

Query  443  RSARCPIMVATGVSARGLDIKNVMHVVNFDLPSAAHGGITEYIHRIGRTARIG  495
            R  +  ++VAT V+ RGLD+ +V  V+N+DLP         YI RIGR  R G
Sbjct  61   RKGKIDVLVATDVAERGLDLPDVDLVINYDLPW----NPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.318    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 739741860


Query= TCONS_00026765

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  112     2e-32


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 112 bits (283),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query  50   KKQCLYDLLLAMPPSRTLIFVNTKIQADFLDDFLYNMGLPSTSIHSDRTQREREDALRSF  109
            K + L +LL      + LIF  TK   +  +  L   G+    +H D +Q ERE+ L  F
Sbjct  2    KLEALLELLKKERGGKVLIFSQTKKTLE-AELLLEKEGIKVARLHGDLSQEEREEILEDF  60

Query  110  RSARCPIMVATGVSARGLDIKNVMHVVNFDLPSAAHGGITEYIHRIGRTARIG  162
            R  +  ++VAT V+ RGLD+ +V  V+N+DLP         YI RIGR  R G
Sbjct  61   RKGKIDVLVATDVAERGLDLPDVDLVINYDLPW----NPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00021785

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  173     2e-52
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  103     6e-27


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 173 bits (442),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 71/194 (37%), Positives = 98/194 (51%), Gaps = 29/194 (15%)

Query  151  TPIQAYAIPAVLTGHDLIAIAQTGSGKTAAFLIPVLSQLMGKAKKLAAPRPNLANGFDPS  210
            TPIQA AIPA+L G D++  A TGSGKT AFL+P L  L                     
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNG---------------  45

Query  211  VDAVRAEPLVLIVAPTRELSTQIFDEARRLCYRSMLRPCVVYGGAPVREQREELQKGCDI  270
                   P  L++APTREL+ QI++E ++L     L+   + GG   +EQ E+L KG DI
Sbjct  46   -------PQALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDI  97

Query  271  LIGTPGRLLDFMDKPHVLSLRRVKYTIIDEADELLLSDWESDFTRIMSGGDVNEDADHRY  330
            L+GTPGRLLD + +     L+ +K  ++DEA  LL   +  D   I+           + 
Sbjct  98   LVGTPGRLLDLLQERK--LLKNLKLLVLDEAHRLLDMGFGPDLEEILR----RLPKKRQI  151

Query  331  MMFSATFNRECRRL  344
            ++ SAT  R    L
Sbjct  152  LLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 103 bits (258),  Expect = 6e-27, Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 5/107 (5%)

Query  380  KKQCLYDLLLAMPPSRTLIFVNTKIQADFLDDFLYNMGLPSTSIHSDRTQREREDALRSF  439
            K + L +LL      + LIF  TK   +  +  L   G+    +H D +Q ERE+ L  F
Sbjct  2    KLEALLELLKKERGGKVLIFSQTKKTLE-AELLLEKEGIKVARLHGDLSQEEREEILEDF  60

Query  440  RSARCPIMVATGVSARGLDIKNVMHVVNFDLPSAAHGGITEYIHRIG  486
            R  +  ++VAT V+ RGLD+ +V  V+N+DLP         YI RIG
Sbjct  61   RKGKIDVLVATDVAERGLDLPDVDLVINYDLPW----NPASYIQRIG  103



Lambda      K        H        a         alpha
   0.319    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 664674974


Query= TCONS_00026766

Length=584
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  175     2e-52
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  115     3e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 175 bits (445),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 71/194 (37%), Positives = 98/194 (51%), Gaps = 29/194 (15%)

Query  151  TPIQAYAIPAVLTGHDLIAIAQTGSGKTAAFLIPVLSQLMGKAKKLAAPRPNLANGFDPS  210
            TPIQA AIPA+L G D++  A TGSGKT AFL+P L  L                     
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNG---------------  45

Query  211  VDAVRAEPLVLIVAPTRELSTQIFDEARRLCYRSMLRPCVVYGGAPVREQREELQKGCDI  270
                   P  L++APTREL+ QI++E ++L     L+   + GG   +EQ E+L KG DI
Sbjct  46   -------PQALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDI  97

Query  271  LIGTPGRLLDFMDKPHVLSLRRVKYTIIDEADELLLSDWESDFTRIMSGGDVNEDADHRY  330
            L+GTPGRLLD + +     L+ +K  ++DEA  LL   +  D   I+           + 
Sbjct  98   LVGTPGRLLDLLQERK--LLKNLKLLVLDEAHRLLDMGFGPDLEEILR----RLPKKRQI  151

Query  331  MMFSATFNRECRRL  344
            ++ SAT  R    L
Sbjct  152  LLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 115 bits (290),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query  380  KKQCLYDLLLAMPPSRTLIFVNTKIQADFLDDFLYNMGLPSTSIHSDRTQREREDALRSF  439
            K + L +LL      + LIF  TK   +  +  L   G+    +H D +Q ERE+ L  F
Sbjct  2    KLEALLELLKKERGGKVLIFSQTKKTLE-AELLLEKEGIKVARLHGDLSQEEREEILEDF  60

Query  440  RSARCPIMVATGVSARGLDIKNVMHVVNFDLPSAAHGGITEYIHRIGRTARIG  492
            R  +  ++VAT V+ RGLD+ +V  V+N+DLP         YI RIGR  R G
Sbjct  61   RKGKIDVLVATDVAERGLDLPDVDLVINYDLPW----NPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.318    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 735258576


Query= TCONS_00021786

Length=352


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00021787

Length=310


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 355153814


Query= TCONS_00021788

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426305 pfam01522, Polysacc_deac_1, Polysaccharide deacetylase...  88.4    9e-22


>CDD:426305 pfam01522, Polysacc_deac_1, Polysaccharide deacetylase.  This 
domain is found in polysaccharide deacetylase. This family 
of polysaccharide deacetylases includes NodB (nodulation protein 
B from Rhizobium) which is a chitooligosaccharide deacetylase. 
It also includes chitin deacetylase from yeast, and 
endoxylanases which hydrolyzes glucosidic bonds in xylan.
Length=124

 Score = 88.4 bits (220),  Expect = 9e-22, Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 52/121 (43%), Gaps = 5/121 (4%)

Query  235  RCTRPNSFAFGIDDGQPCFAQEVMAILQKENILVTFFVVGSGLRDEETNFTQVYREMLRR  294
              T     A   DDG       ++ +L+K  +  TFFV+G     E   +  + + M+  
Sbjct  2    GPTPKKVVALTFDDGPSENTPAILDVLKKYGVKATFFVIGG--NVER--YPDLVKRMVEA  57

Query  295  GHQIALHSNTHRKMEGLEAIEDIDDEIIRNIRAFGSFLGVESRYFRPPFGTIGSRTRQRL  354
            GH+I  H+ +H  + GL   E+I  EI R   A     G   R FRPP+G+      +  
Sbjct  58   GHEIGNHTWSHPNLTGLSP-EEIRKEIERAQDALEKATGKRPRLFRPPYGSYNDTVLEVA  116

Query  355  A  355
             
Sbjct  117  K  117



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00026767

Length=410


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00021789

Length=410


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0798    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00021790

Length=51
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436458 pfam18388, Atg29_N, Atg29 N-terminal domain. This is t...  80.7    2e-23


>CDD:436458 pfam18388, Atg29_N, Atg29 N-terminal domain.  This is the N-terminal 
domain found in fungal Atg proteins such as Atg29. In 
yeast, the induction of autophagy begins at a single perivacuolar 
site that is proximal to the vacuole, called the phagophore 
assembly site (PAS). Atg17-Atg29-Atg31 complex (Atg1 
complex) formation is a prerequisite for PAS assembly. Functional 
analysis indicate that the N-terminal half Atg29 can 
bind Atg31.
Length=54

 Score = 80.7 bits (200),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 29/40 (73%), Positives = 35/40 (88%), Gaps = 0/40 (0%)

Query  12  FTVFIRLPFPRGAFMDPPQVEWNAAKDQALWDMLSRPAKG  51
           +TVFIRLPFPRG F+DPP VEW+AAKD+ALW +LSR +K 
Sbjct  1   YTVFIRLPFPRGDFVDPPPVEWDAAKDRALWKILSRASKK  40



Lambda      K        H        a         alpha
   0.326    0.138    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00021791

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  124     4e-35
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  84.5    5e-20


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 124 bits (313),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 67/179 (37%), Positives = 92/179 (51%), Gaps = 12/179 (7%)

Query  62   LINFHGSGFLLPLHGSDDEFCRRVSRETEYTVLDVQYRLAPEYPFPAALNDVEDAVKWVL  121
            L+ FHG GF+L    + D  CRR++ E    V+ V YRLAPE+PFPAA +D   A++W+ 
Sbjct  1    LVYFHGGGFVLGSADTHDRLCRRLAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLA  60

Query  122  QQPDKF--DLTRVAISGFSAGGNLAIVAASVLYPRETFRSVLAF----YPPLDLYTDPGA  175
            +Q  +   D +R+A++G SAGGNLA  AA  L  R+      A     YP  DL T+  +
Sbjct  61   EQAAELGADPSRIAVAGDSAGGNLA--AAVALRARDEGLPKPAGQVLIYPGTDLRTESPS  118

Query  176  KRPPDPAGNPI-PAPLCRLLDKSYVPSAYDARDPRISPCYAQP-ERFPDRVLVVTAAGD  232
                + A  P+          + Y+P A D  DP  SP +A      P   LVV A  D
Sbjct  119  YLAREFADGPLLTRAAMDWFWRLYLPGA-DRDDPLASPLFASDLSGLP-PALVVVAEFD  175


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 84.5 bits (210),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 29/163 (18%)

Query  49   LYRPATSLSPSPVLINFHGSGFLLPLHG---SDDEFCRRVSRE---TEYTVLDVQYRLAP  102
            +Y P  +  P PV+I  HG G+     G   +D  F     +      Y V  + YRL+ 
Sbjct  3    IYLPKNAKGPYPVVIWIHGGGWN---SGDKEADMGFMTNTVKALLKAGYAVASINYRLST  59

Query  103  EYPFPAALNDVEDAVKWVLQQPDK--FDLTRVAISGFSAGGNLAIVAA------------  148
            +  FPA + DV+ A++++     K   D  ++A+ GFSAGG+LA++A             
Sbjct  60   DAKFPAQIQDVKAAIRFLRANAAKYGIDTNKIALMGFSAGGHLALLAGLSNNNKEFEGNV  119

Query  149  SVLYPRETFRS-----VLAFYPPLDLYTDPGAKRPPDPAGNPI  186
                P  +  S     V+ FY P DL  D  +    + A +P 
Sbjct  120  GDYTPESSKESFKVNAVVDFYGPTDL-LDMDSCGTHNDAKSPE  161



Lambda      K        H        a         alpha
   0.321    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00021792

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  124     4e-35
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  84.5    5e-20


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 124 bits (313),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 67/179 (37%), Positives = 92/179 (51%), Gaps = 12/179 (7%)

Query  62   LINFHGSGFLLPLHGSDDEFCRRVSRETEYTVLDVQYRLAPEYPFPAALNDVEDAVKWVL  121
            L+ FHG GF+L    + D  CRR++ E    V+ V YRLAPE+PFPAA +D   A++W+ 
Sbjct  1    LVYFHGGGFVLGSADTHDRLCRRLAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLA  60

Query  122  QQPDKF--DLTRVAISGFSAGGNLAIVAASVLYPRETFRSVLAF----YPPLDLYTDPGA  175
            +Q  +   D +R+A++G SAGGNLA  AA  L  R+      A     YP  DL T+  +
Sbjct  61   EQAAELGADPSRIAVAGDSAGGNLA--AAVALRARDEGLPKPAGQVLIYPGTDLRTESPS  118

Query  176  KRPPDPAGNPI-PAPLCRLLDKSYVPSAYDARDPRISPCYAQP-ERFPDRVLVVTAAGD  232
                + A  P+          + Y+P A D  DP  SP +A      P   LVV A  D
Sbjct  119  YLAREFADGPLLTRAAMDWFWRLYLPGA-DRDDPLASPLFASDLSGLP-PALVVVAEFD  175


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 84.5 bits (210),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 29/163 (18%)

Query  49   LYRPATSLSPSPVLINFHGSGFLLPLHG---SDDEFCRRVSRE---TEYTVLDVQYRLAP  102
            +Y P  +  P PV+I  HG G+     G   +D  F     +      Y V  + YRL+ 
Sbjct  3    IYLPKNAKGPYPVVIWIHGGGWN---SGDKEADMGFMTNTVKALLKAGYAVASINYRLST  59

Query  103  EYPFPAALNDVEDAVKWVLQQPDK--FDLTRVAISGFSAGGNLAIVAA------------  148
            +  FPA + DV+ A++++     K   D  ++A+ GFSAGG+LA++A             
Sbjct  60   DAKFPAQIQDVKAAIRFLRANAAKYGIDTNKIALMGFSAGGHLALLAGLSNNNKEFEGNV  119

Query  149  SVLYPRETFRS-----VLAFYPPLDLYTDPGAKRPPDPAGNPI  186
                P  +  S     V+ FY P DL  D  +    + A +P 
Sbjct  120  GDYTPESSKESFKVNAVVDFYGPTDL-LDMDSCGTHNDAKSPE  161



Lambda      K        H        a         alpha
   0.321    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00021793

Length=682
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372424 pfam13000, Acatn, Acetyl-coenzyme A transporter 1. The...  564     0.0  


>CDD:372424 pfam13000, Acatn, Acetyl-coenzyme A transporter 1.  The mouse 
Acatn is a 61 kDa hydrophobic protein with six to 10 transmembrane 
domains. It appears to promote 9-O-acetylation in gangliosides.
Length=543

 Score = 564 bits (1456),  Expect = 0.0, Method: Composition-based stats.
 Identities = 231/554 (42%), Positives = 333/554 (60%), Gaps = 85/554 (15%)

Query  197  FLLLCVLYFLQGVPMGLATGSVPFLLKPY---LSYGQIGVFSLASYPYSLKLLWSPIVDA  253
            F LL  LYFLQG+P+GLA G++PFLLK      S+  +G+FS+A+YPYSLK+LWSPIVD+
Sbjct  1    FYLLVALYFLQGIPVGLAFGTIPFLLKSMAKETSFTSLGIFSMATYPYSLKILWSPIVDS  60

Query  254  VWSQRFGRRKSWITPVQVIAGLAMIYLGGHIEEMMVKAG--------ANGG---AGVWNF  302
            ++S++ GRR+SWI PVQ+++G+ +I LG  I + ++  G         + G     +   
Sbjct  61   IYSKKIGRRRSWIIPVQLVSGIMLIILGYCISKGLIFPGVDDAFHGRLSKGVLNVNITTL  120

Query  303  TYWWFLLVFFCATQDIAVDGWAITLMSPPNISYASTAQTVGLTAGHFLSYTVFLAFNSKD  362
            T+++ +LVF CATQDIAVDGWA+T++S  ++SYASTAQTVGL  G+FLS+T+FL+ NS D
Sbjct  121  TWYFGILVFLCATQDIAVDGWALTILSKQSLSYASTAQTVGLNTGYFLSFTIFLSLNSSD  180

Query  363  FANRWFRTVPGEDGLLSLGGYLTFWGWAYLFVTICLALMKKE------------------  404
            FAN++FR  P E GL+SLGGY+ F G  Y+ VTI +    KE                  
Sbjct  181  FANKYFRNTPLEYGLISLGGYMKFAGIIYILVTIYVIFFTKERPYASLPSVSKKSLDEKY  240

Query  405  ---------------DKTRERDSITDVYKSMWNILKLKNIQTIIVIHLIAKIGFQANDAV  449
                           +KT+   SI  VY+    +LKL +++++ +IHLI+K  FQ N+A 
Sbjct  241  DEISKISIIEYNDDVEKTKNTSSIKYVYRCFIKVLKLPSVRSLAIIHLISKFAFQCNEAA  300

Query  450  TSLKLLDKGFGTDNMALVVLIDFPFEIGLGYYAGKWSTEYTPMRL---------------  494
            T+LKLL+KGF  +++A+ VLIDFPFEI  GYY  KWS++  P+++               
Sbjct  301  TNLKLLEKGFKREDLAVTVLIDFPFEIIFGYYVAKWSSDSHPLKIMNIRPMKLSRSNRII  360

Query  495  ------------WCWAFIGRLAAAVLAQATVMIYPSSEAVPFWYILVVIGEHVLSTFMNT  542
                        W W F+GRL AA+L    V  +P    +   Y L+VI +H+L +FM+T
Sbjct  361  RLLVGDAGVLTPWLWGFLGRLLAAILGSYVVKQFPKDGQITTGYFLLVIIQHLLGSFMST  420

Query  543  VMFVAVSAFHARIADPAIGGTYMTMLATVSNLGGTFPRYFILKLVDFFTVATCIPPAVPP  602
            V FV +SAFH RIADP +GGTYMT+L T+SNLGGT+PR FI+ ++D+FT+  C+      
Sbjct  421  VQFVGISAFHTRIADPVLGGTYMTLLNTLSNLGGTWPRIFIMSMIDYFTIYECVNEDTSN  480

Query  603  AAEKLKGDLVTSAFSCALEPDKNRCVNGGGVCETSRDGYYITNILCVLVGTVTFIMFIQP  662
                  G                   + GG     RDGYY+TN++C+++G + +  +++ 
Sbjct  481  NTILTSGGN-----MEFC------TYSLGGTVSIIRDGYYVTNLICIVLGILLYFTYLKR  529

Query  663  AVLKLQSLPLRAWR  676
               +LQ LP+ AWR
Sbjct  530  KAQQLQKLPISAWR  543



Lambda      K        H        a         alpha
   0.322    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 868651310


Query= TCONS_00021794

Length=998
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           177     2e-51
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  154     1e-44
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  101     2e-25
CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular ...  67.3    2e-14


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 177 bits (451),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 113/205 (55%), Gaps = 2/205 (1%)

Query  482  NTKRAYQRVWNERTSTMTTFIGNTILALIVGSVFYGTPTATAGFYAKGATLFYAVLLNAL  541
              KR + R W + +  +   I   ++ALI G++F        G    G  LF+++L NA 
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGL-LFFSILFNAF  59

Query  542  TAMTEI-NSLYSQRPIVEKHASFAFYHPATEAIAGVVSDIPVKFLMAIAFNIILYFLSGL  600
            +A++ I      +R ++ +  +   Y P+   +A ++S++P+  L ++ F +I+YF+ GL
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  601  RREPSQFFIYFLITFIIMFVMSAVFRTMAAITRTVSQAMTLAGVLILMLVIYTGFVVPVN  660
                 +FF++ L+  +     S++   ++A+  +   A  L  +++L L++ +GF +P++
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  661  YMHPWFKWIHYLNPIFYAFEILIAN  685
             M  W++WI+YLNP+ YA E L AN
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 154 bits (391),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 51/87 (59%), Positives = 61/87 (70%), Gaps = 0/87 (0%)

Query  699  PVYPNLPGDSFVCSSRGAVAGRRTVSGDAYIEASYSYSYSHVWRNFGILIAFLIGFMVIY  758
            P Y N+ G + VC+  GAV G+  VSGD Y+ ASY YSYSH+WRNFGILIAF I F+ +Y
Sbjct  5    PGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFFLALY  64

Query  759  FVATELNSATTSSAEVLVFRRGHEPAH  785
             +ATE NSA  S  EVLVF+RG  P  
Sbjct  65   LIATEYNSAAKSKGEVLVFKRGKAPKL  91


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 101 bits (253),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 10/155 (6%)

Query  847  LDHVSGWVKPGTLTALMGVSGAGKTTLLDVLAHRTTMGVITGDMFVNGKPLDS----SFQ  902
            L +VS  + PG + AL+G +GAGK+TLL ++A   +     G + ++G+ L      S +
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLS--PTEGTILLDGQDLTDDERKSLR  58

Query  903  RKTGYVQQQDLHLETATVRESLRFSAMLRQPASVSKEEKYAYVEEVIKMLNMEDFAEAVV  962
            ++ GYV Q        TVRE+LR   +L+    +SK EK A  EE ++ L + D A+  V
Sbjct  59   KEIGYVFQDPQLFPRLTVRENLRLGLLLK---GLSKREKDARAEEALEKLGLGDLADRPV  115

Query  963  GVPGEGLNVEQRKLLTIGVELAAKPKLLLFLDEPT  997
            G     L+  QR+ + I   L  KPKLLL LDEPT
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPT  149


 Score = 86.5 bits (215),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 14/162 (9%)

Query  150  LHDFNGMLHSGELLIVLGRPGSGCSTFLKTLSGELHGLNVDEKTVLHYSGIP-QSTMIKE  208
            L + +  L+ GE+L ++G  G+G ST LK ++G L      E T+L   G        K 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSP---TEGTIL-LDGQDLTDDERKS  56

Query  209  FKGEVVYNQEVDKHFPHLTVGQTLEFAAAVRTPSKRLGGMSRNEYAQMMTKVVMAVFGLS  268
             + E+ Y  +  + FP LTV + L            L G+S+ E      +  +   GL 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGL-------LLKGLSKREKDARAEE-ALEKLGLG  108

Query  269  HTYNTKVGNDTVRGVPGGERKRVSIAEMALAGAPLAAWDNST  310
               +  VG      + GG+R+RV+IA   L    L   D  T
Sbjct  109  DLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149


>CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular N-terminal. 
 This domain is found at the N-terminus of ABC-transporter 
proteins from fungi, plants to higher eukaryotes. It would 
appear to be an extracellular domain.
Length=80

 Score = 67.3 bits (165),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 23/83 (28%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query  48   LTQLASRDNAVSRVSTVADISLDDPALNPENKDFDLYKWLRKVVHVLNEEG-VPRKEASI  106
            L ++ +R       S+ +  S +    + E+ +FDL KWL+ +  +++E+G +  ++  +
Sbjct  2    LARILTR----QSSSSSSSSSPESTDPDEEDSEFDLRKWLKNLRRLIDEDGYIKPRKLGV  57

Query  107  FFQHLRVSGTGAALQLQKTVADI  129
             F++L VSG GA    Q TV + 
Sbjct  58   AFKNLTVSGVGAGADYQPTVGNA  80



Lambda      K        H        a         alpha
   0.320    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1277120152


Query= TCONS_00026769

Length=998
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           177     2e-51
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  154     1e-44
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  101     2e-25
CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular ...  67.3    2e-14


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 177 bits (451),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 113/205 (55%), Gaps = 2/205 (1%)

Query  482  NTKRAYQRVWNERTSTMTTFIGNTILALIVGSVFYGTPTATAGFYAKGATLFYAVLLNAL  541
              KR + R W + +  +   I   ++ALI G++F        G    G  LF+++L NA 
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGL-LFFSILFNAF  59

Query  542  TAMTEI-NSLYSQRPIVEKHASFAFYHPATEAIAGVVSDIPVKFLMAIAFNIILYFLSGL  600
            +A++ I      +R ++ +  +   Y P+   +A ++S++P+  L ++ F +I+YF+ GL
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  601  RREPSQFFIYFLITFIIMFVMSAVFRTMAAITRTVSQAMTLAGVLILMLVIYTGFVVPVN  660
                 +FF++ L+  +     S++   ++A+  +   A  L  +++L L++ +GF +P++
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  661  YMHPWFKWIHYLNPIFYAFEILIAN  685
             M  W++WI+YLNP+ YA E L AN
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 154 bits (391),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 51/87 (59%), Positives = 61/87 (70%), Gaps = 0/87 (0%)

Query  699  PVYPNLPGDSFVCSSRGAVAGRRTVSGDAYIEASYSYSYSHVWRNFGILIAFLIGFMVIY  758
            P Y N+ G + VC+  GAV G+  VSGD Y+ ASY YSYSH+WRNFGILIAF I F+ +Y
Sbjct  5    PGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFFLALY  64

Query  759  FVATELNSATTSSAEVLVFRRGHEPAH  785
             +ATE NSA  S  EVLVF+RG  P  
Sbjct  65   LIATEYNSAAKSKGEVLVFKRGKAPKL  91


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 101 bits (253),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 10/155 (6%)

Query  847  LDHVSGWVKPGTLTALMGVSGAGKTTLLDVLAHRTTMGVITGDMFVNGKPLDS----SFQ  902
            L +VS  + PG + AL+G +GAGK+TLL ++A   +     G + ++G+ L      S +
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLS--PTEGTILLDGQDLTDDERKSLR  58

Query  903  RKTGYVQQQDLHLETATVRESLRFSAMLRQPASVSKEEKYAYVEEVIKMLNMEDFAEAVV  962
            ++ GYV Q        TVRE+LR   +L+    +SK EK A  EE ++ L + D A+  V
Sbjct  59   KEIGYVFQDPQLFPRLTVRENLRLGLLLK---GLSKREKDARAEEALEKLGLGDLADRPV  115

Query  963  GVPGEGLNVEQRKLLTIGVELAAKPKLLLFLDEPT  997
            G     L+  QR+ + I   L  KPKLLL LDEPT
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPT  149


 Score = 86.5 bits (215),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 14/162 (9%)

Query  150  LHDFNGMLHSGELLIVLGRPGSGCSTFLKTLSGELHGLNVDEKTVLHYSGIP-QSTMIKE  208
            L + +  L+ GE+L ++G  G+G ST LK ++G L      E T+L   G        K 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSP---TEGTIL-LDGQDLTDDERKS  56

Query  209  FKGEVVYNQEVDKHFPHLTVGQTLEFAAAVRTPSKRLGGMSRNEYAQMMTKVVMAVFGLS  268
             + E+ Y  +  + FP LTV + L            L G+S+ E      +  +   GL 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGL-------LLKGLSKREKDARAEE-ALEKLGLG  108

Query  269  HTYNTKVGNDTVRGVPGGERKRVSIAEMALAGAPLAAWDNST  310
               +  VG      + GG+R+RV+IA   L    L   D  T
Sbjct  109  DLADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149


>CDD:464194 pfam14510, ABC_trans_N, ABC-transporter extracellular N-terminal. 
 This domain is found at the N-terminus of ABC-transporter 
proteins from fungi, plants to higher eukaryotes. It would 
appear to be an extracellular domain.
Length=80

 Score = 67.3 bits (165),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 23/83 (28%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query  48   LTQLASRDNAVSRVSTVADISLDDPALNPENKDFDLYKWLRKVVHVLNEEG-VPRKEASI  106
            L ++ +R       S+ +  S +    + E+ +FDL KWL+ +  +++E+G +  ++  +
Sbjct  2    LARILTR----QSSSSSSSSSPESTDPDEEDSEFDLRKWLKNLRRLIDEDGYIKPRKLGV  57

Query  107  FFQHLRVSGTGAALQLQKTVADI  129
             F++L VSG GA    Q TV + 
Sbjct  58   AFKNLTVSGVGAGADYQPTVGNA  80



Lambda      K        H        a         alpha
   0.320    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1277120152


Query= TCONS_00021796

Length=682
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372424 pfam13000, Acatn, Acetyl-coenzyme A transporter 1. The...  564     0.0  


>CDD:372424 pfam13000, Acatn, Acetyl-coenzyme A transporter 1.  The mouse 
Acatn is a 61 kDa hydrophobic protein with six to 10 transmembrane 
domains. It appears to promote 9-O-acetylation in gangliosides.
Length=543

 Score = 564 bits (1456),  Expect = 0.0, Method: Composition-based stats.
 Identities = 231/554 (42%), Positives = 333/554 (60%), Gaps = 85/554 (15%)

Query  197  FLLLCVLYFLQGVPMGLATGSVPFLLKPY---LSYGQIGVFSLASYPYSLKLLWSPIVDA  253
            F LL  LYFLQG+P+GLA G++PFLLK      S+  +G+FS+A+YPYSLK+LWSPIVD+
Sbjct  1    FYLLVALYFLQGIPVGLAFGTIPFLLKSMAKETSFTSLGIFSMATYPYSLKILWSPIVDS  60

Query  254  VWSQRFGRRKSWITPVQVIAGLAMIYLGGHIEEMMVKAG--------ANGG---AGVWNF  302
            ++S++ GRR+SWI PVQ+++G+ +I LG  I + ++  G         + G     +   
Sbjct  61   IYSKKIGRRRSWIIPVQLVSGIMLIILGYCISKGLIFPGVDDAFHGRLSKGVLNVNITTL  120

Query  303  TYWWFLLVFFCATQDIAVDGWAITLMSPPNISYASTAQTVGLTAGHFLSYTVFLAFNSKD  362
            T+++ +LVF CATQDIAVDGWA+T++S  ++SYASTAQTVGL  G+FLS+T+FL+ NS D
Sbjct  121  TWYFGILVFLCATQDIAVDGWALTILSKQSLSYASTAQTVGLNTGYFLSFTIFLSLNSSD  180

Query  363  FANRWFRTVPGEDGLLSLGGYLTFWGWAYLFVTICLALMKKE------------------  404
            FAN++FR  P E GL+SLGGY+ F G  Y+ VTI +    KE                  
Sbjct  181  FANKYFRNTPLEYGLISLGGYMKFAGIIYILVTIYVIFFTKERPYASLPSVSKKSLDEKY  240

Query  405  ---------------DKTRERDSITDVYKSMWNILKLKNIQTIIVIHLIAKIGFQANDAV  449
                           +KT+   SI  VY+    +LKL +++++ +IHLI+K  FQ N+A 
Sbjct  241  DEISKISIIEYNDDVEKTKNTSSIKYVYRCFIKVLKLPSVRSLAIIHLISKFAFQCNEAA  300

Query  450  TSLKLLDKGFGTDNMALVVLIDFPFEIGLGYYAGKWSTEYTPMRL---------------  494
            T+LKLL+KGF  +++A+ VLIDFPFEI  GYY  KWS++  P+++               
Sbjct  301  TNLKLLEKGFKREDLAVTVLIDFPFEIIFGYYVAKWSSDSHPLKIMNIRPMKLSRSNRII  360

Query  495  ------------WCWAFIGRLAAAVLAQATVMIYPSSEAVPFWYILVVIGEHVLSTFMNT  542
                        W W F+GRL AA+L    V  +P    +   Y L+VI +H+L +FM+T
Sbjct  361  RLLVGDAGVLTPWLWGFLGRLLAAILGSYVVKQFPKDGQITTGYFLLVIIQHLLGSFMST  420

Query  543  VMFVAVSAFHARIADPAIGGTYMTMLATVSNLGGTFPRYFILKLVDFFTVATCIPPAVPP  602
            V FV +SAFH RIADP +GGTYMT+L T+SNLGGT+PR FI+ ++D+FT+  C+      
Sbjct  421  VQFVGISAFHTRIADPVLGGTYMTLLNTLSNLGGTWPRIFIMSMIDYFTIYECVNEDTSN  480

Query  603  AAEKLKGDLVTSAFSCALEPDKNRCVNGGGVCETSRDGYYITNILCVLVGTVTFIMFIQP  662
                  G                   + GG     RDGYY+TN++C+++G + +  +++ 
Sbjct  481  NTILTSGGN-----MEFC------TYSLGGTVSIIRDGYYVTNLICIVLGILLYFTYLKR  529

Query  663  AVLKLQSLPLRAWR  676
               +LQ LP+ AWR
Sbjct  530  KAQQLQKLPISAWR  543



Lambda      K        H        a         alpha
   0.322    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 868651310


Query= TCONS_00021798

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00021799

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00021800

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00026771

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00026772

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00026773

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00021802

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.128    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00021803

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.128    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00026774

Length=563


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 703875588


Query= TCONS_00021806

Length=576


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.122    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 723303152


Query= TCONS_00026775

Length=576


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.122    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 723303152


Query= TCONS_00021807

Length=814


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1047709440


Query= TCONS_00021809

Length=188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460546 pfam02391, MoaE, MoaE protein. This family contains th...  141     2e-44


>CDD:460546 pfam02391, MoaE, MoaE protein.  This family contains the MoaE 
protein that is involved in biosynthesis of molybdopterin. 
Molybdopterin, the universal component of the pterin molybdenum 
cofactors, contains a dithiolene group serving to bind Mo. 
Addition of the dithiolene sulfurs to a molybdopterin precursor 
requires the activity of the converting factor. Converting 
factor contains the MoaE and MoaD proteins.
Length=113

 Score = 141 bits (358),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 45/103 (44%), Positives = 63/103 (61%), Gaps = 0/103 (0%)

Query  40   LTYSTLNPTVALEHTSSPAAGANVLFLGTTRDTFEGRAVSQLSYTSYPPLALKSLMSIAT  99
            +T   L+        S P AGA V F+GT RD F+G+ V+ L Y +YPP+A K L  IA 
Sbjct  1    ITEEPLDVAEIAALVSDPEAGAVVTFVGTVRDHFDGKKVTALEYEAYPPMAEKELAEIAE  60

Query  100  RAVEKFDLKGVYIAHRLGVVPISEASIVVAVSAGHRGMAWKAA  142
             A E++ L  V I HR+G +P+ EA ++VAVS+ HR  A++A 
Sbjct  61   EARERWPLLDVAIVHRVGRLPVGEAIVLVAVSSPHRAEAFEAC  103



Lambda      K        H        a         alpha
   0.313    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00021810

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460630 pfam02630, SCO1-SenC, SCO1/SenC. This family is involv...  196     3e-64


>CDD:460630 pfam02630, SCO1-SenC, SCO1/SenC.  This family is involved in 
biogenesis of respiratory and photosynthetic systems. SCO1 is 
required for a post-translational step in the accumulation 
of subunits COXI and COXII of cytochrome c oxidase. SenC is 
required for optimal cytochrome c oxidase activity and maximal 
induction of genes encoding the light-harvesting and reaction 
centre complexes of R. capsulatus.
Length=134

 Score = 196 bits (501),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 71/139 (51%), Positives = 88/139 (63%), Gaps = 5/139 (4%)

Query  131  GGPFTLTDLDGKEFTAEDLKGKYSFVYFGFTHCPDICPDELDKMAEIIDRVKEATKGENI  190
            GGPF L D DGK  T  D +G+ S V+FGFTHCPD+CP  L  MA+++D + E       
Sbjct  1    GGPFELVDQDGKAVTEADFEGRPSLVFFGFTHCPDVCPTTLPNMAQVLDALGEEGID---  57

Query  191  FLPVFITCDPARDTPQVLREYLKEFHPDIIGLTGTYEQVKHVCKQYRVYFSTPKDVKPGE  250
              PVFIT DP RDTP+VL EYL+ F P IIGLTG+ EQ+    + +RVY+   K    G 
Sbjct  58   VQPVFITVDPERDTPEVLAEYLEAFGPRIIGLTGSPEQIAAAARAFRVYYE--KVPDDGG  115

Query  251  DYLVDHSIYFYLMDPDNDF  269
            DY VDH+   YL+DPD  F
Sbjct  116  DYTVDHTASVYLVDPDGRF  134



Lambda      K        H        a         alpha
   0.320    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00021811

Length=222


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00021812

Length=475


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 590476040


Query= TCONS_00026776

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.123    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00026777

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00021813

Length=319


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00021814

Length=387


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00021815

Length=406


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00026778

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0830    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00021816

Length=179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:408556 pfam18785, Inv-AAD, Invertebrate-AID/APOBEC-deaminase....  266     1e-93
CDD:395307 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidyla...  70.4    6e-17


>CDD:408556 pfam18785, Inv-AAD, Invertebrate-AID/APOBEC-deaminase.  A classical 
AID/APOBEC-like deaminases found in lophotrochozoans, 
echinoderms and cnidarians.
Length=129

 Score = 266 bits (682),  Expect = 1e-93, Method: Composition-based stats.
 Identities = 96/136 (71%), Positives = 114/136 (84%), Gaps = 7/136 (5%)

Query  39   GAVLVDADKNEILSTGYSMELPGDRPGDPGNTHAEQCCFIKVAEKHNIPEDRLGEVLPKN  98
            GAVLVDAD NEILSTGY++ELPG       NTHAEQCCFIK+AEKH +PE+RLGEVLP N
Sbjct  1    GAVLVDADTNEILSTGYTLELPG-------NTHAEQCCFIKLAEKHGVPEERLGEVLPPN  53

Query  99   TVLYTTMEPCNERLSGNRTCVDRILSLKGAVKVVYVGIKEPETFIGQNMSKKKLEDGGVI  158
            TVLYTTMEPC++RLSGN  CV+RIL LKGA+K VYVG+KEPE F+G+N  +K+LED G+ 
Sbjct  54   TVLYTTMEPCSKRLSGNLPCVERILRLKGAIKTVYVGVKEPEKFVGENTGRKRLEDAGIE  113

Query  159  VEHVEGMEQQILEVSM  174
            V HVEG+E +ILEV+ 
Sbjct  114  VVHVEGLEDEILEVAT  129


>CDD:395307 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase 
zinc-binding region.  
Length=100

 Score = 70.4 bits (173),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 21/120 (18%)

Query  14   DHKAYMEYALEKARLSPPAPTKFCVGAVLVDADKNEILSTGYSMELPGDRPGDPGNTHAE  73
              + +M  AL+ A+ + P    F VGAV+V  D  EI++TGY+ E  G  P      HAE
Sbjct  1    WDEYFMRLALKAAKRAYPYS-NFPVGAVIVKKD-GEIIATGYNGENAGYDPTI----HAE  54

Query  74   QCCFIKVAEKHNIPEDRLGEVLPKNTVLYTTMEPCNERLSGNRTCVDRILSLKGAVKVVY  133
            +    +  ++        G  L +   LY T+EPC         C   I+   G  +VV+
Sbjct  55   RNAIRQAGKR------GEGVRL-EGATLYVTLEPCG-------MCAQAIIES-GIKRVVF  99



Lambda      K        H        a         alpha
   0.314    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00021817

Length=1145


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1463257424


Query= TCONS_00021819

Length=1567


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1992020216


Query= TCONS_00021818

Length=1419


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1818488600


Query= TCONS_00021821

Length=722
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396249 pfam01585, G-patch, G-patch domain. This domain is fou...  58.3    9e-12


>CDD:396249 pfam01585, G-patch, G-patch domain.  This domain is found in 
a number of RNA binding proteins, and is also found in proteins 
that contain RNA binding domains. This suggests that this 
domain may have an RNA binding function. This domain has seven 
highly conserved glycines.
Length=45

 Score = 58.3 bits (142),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 24/44 (55%), Gaps = 0/44 (0%)

Query  639  TTSKGASLLSKMGWSAGSGLGAQGTGMTAPIATEVYAQGVGLGA  682
            T++ G  LL KMGW  G GLG    G+  PI  ++     GLGA
Sbjct  1    TSNIGFKLLQKMGWKEGQGLGKNEQGIAEPIEAKIKKDRRGLGA  44



Lambda      K        H        a         alpha
   0.313    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 913835456


Query= TCONS_00021820

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396249 pfam01585, G-patch, G-patch domain. This domain is fou...  58.3    7e-12


>CDD:396249 pfam01585, G-patch, G-patch domain.  This domain is found in 
a number of RNA binding proteins, and is also found in proteins 
that contain RNA binding domains. This suggests that this 
domain may have an RNA binding function. This domain has seven 
highly conserved glycines.
Length=45

 Score = 58.3 bits (142),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 24/44 (55%), Gaps = 0/44 (0%)

Query  444  TTSKGASLLSKMGWSAGSGLGAQGTGMTAPIATEVYAQGVGLGA  487
            T++ G  LL KMGW  G GLG    G+  PI  ++     GLGA
Sbjct  1    TSNIGFKLLQKMGWKEGQGLGKNEQGIAEPIEAKIKKDRRGLGA  44



Lambda      K        H        a         alpha
   0.311    0.127    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00026779

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396249 pfam01585, G-patch, G-patch domain. This domain is fou...  58.3    8e-12


>CDD:396249 pfam01585, G-patch, G-patch domain.  This domain is found in 
a number of RNA binding proteins, and is also found in proteins 
that contain RNA binding domains. This suggests that this 
domain may have an RNA binding function. This domain has seven 
highly conserved glycines.
Length=45

 Score = 58.3 bits (142),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 24/44 (55%), Gaps = 0/44 (0%)

Query  461  TTSKGASLLSKMGWSAGSGLGAQGTGMTAPIATEVYAQGVGLGA  504
            T++ G  LL KMGW  G GLG    G+  PI  ++     GLGA
Sbjct  1    TSNIGFKLLQKMGWKEGQGLGKNEQGIAEPIEAKIKKDRRGLGA  44



Lambda      K        H        a         alpha
   0.311    0.127    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00026780

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00021822

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396249 pfam01585, G-patch, G-patch domain. This domain is fou...  58.3    8e-12


>CDD:396249 pfam01585, G-patch, G-patch domain.  This domain is found in 
a number of RNA binding proteins, and is also found in proteins 
that contain RNA binding domains. This suggests that this 
domain may have an RNA binding function. This domain has seven 
highly conserved glycines.
Length=45

 Score = 58.3 bits (142),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 24/44 (55%), Gaps = 0/44 (0%)

Query  461  TTSKGASLLSKMGWSAGSGLGAQGTGMTAPIATEVYAQGVGLGA  504
            T++ G  LL KMGW  G GLG    G+  PI  ++     GLGA
Sbjct  1    TSNIGFKLLQKMGWKEGQGLGKNEQGIAEPIEAKIKKDRRGLGA  44



Lambda      K        H        a         alpha
   0.311    0.127    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00021823

Length=739
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396249 pfam01585, G-patch, G-patch domain. This domain is fou...  58.3    1e-11


>CDD:396249 pfam01585, G-patch, G-patch domain.  This domain is found in 
a number of RNA binding proteins, and is also found in proteins 
that contain RNA binding domains. This suggests that this 
domain may have an RNA binding function. This domain has seven 
highly conserved glycines.
Length=45

 Score = 58.3 bits (142),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 24/44 (55%), Gaps = 0/44 (0%)

Query  656  TTSKGASLLSKMGWSAGSGLGAQGTGMTAPIATEVYAQGVGLGA  699
            T++ G  LL KMGW  G GLG    G+  PI  ++     GLGA
Sbjct  1    TSNIGFKLLQKMGWKEGQGLGKNEQGIAEPIEAKIKKDRRGLGA  44



Lambda      K        H        a         alpha
   0.313    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 938573040


Query= TCONS_00021825

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396249 pfam01585, G-patch, G-patch domain. This domain is fou...  58.3    7e-12


>CDD:396249 pfam01585, G-patch, G-patch domain.  This domain is found in 
a number of RNA binding proteins, and is also found in proteins 
that contain RNA binding domains. This suggests that this 
domain may have an RNA binding function. This domain has seven 
highly conserved glycines.
Length=45

 Score = 58.3 bits (142),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 24/44 (55%), Gaps = 0/44 (0%)

Query  444  TTSKGASLLSKMGWSAGSGLGAQGTGMTAPIATEVYAQGVGLGA  487
            T++ G  LL KMGW  G GLG    G+  PI  ++     GLGA
Sbjct  1    TSNIGFKLLQKMGWKEGQGLGKNEQGIAEPIEAKIKKDRRGLGA  44



Lambda      K        H        a         alpha
   0.311    0.127    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00021826

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396249 pfam01585, G-patch, G-patch domain. This domain is fou...  58.3    7e-12


>CDD:396249 pfam01585, G-patch, G-patch domain.  This domain is found in 
a number of RNA binding proteins, and is also found in proteins 
that contain RNA binding domains. This suggests that this 
domain may have an RNA binding function. This domain has seven 
highly conserved glycines.
Length=45

 Score = 58.3 bits (142),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 24/44 (55%), Gaps = 0/44 (0%)

Query  444  TTSKGASLLSKMGWSAGSGLGAQGTGMTAPIATEVYAQGVGLGA  487
            T++ G  LL KMGW  G GLG    G+  PI  ++     GLGA
Sbjct  1    TSNIGFKLLQKMGWKEGQGLGKNEQGIAEPIEAKIKKDRRGLGA  44



Lambda      K        H        a         alpha
   0.311    0.127    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00026781

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396249 pfam01585, G-patch, G-patch domain. This domain is fou...  58.3    8e-12


>CDD:396249 pfam01585, G-patch, G-patch domain.  This domain is found in 
a number of RNA binding proteins, and is also found in proteins 
that contain RNA binding domains. This suggests that this 
domain may have an RNA binding function. This domain has seven 
highly conserved glycines.
Length=45

 Score = 58.3 bits (142),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 24/44 (55%), Gaps = 0/44 (0%)

Query  461  TTSKGASLLSKMGWSAGSGLGAQGTGMTAPIATEVYAQGVGLGA  504
            T++ G  LL KMGW  G GLG    G+  PI  ++     GLGA
Sbjct  1    TSNIGFKLLQKMGWKEGQGLGKNEQGIAEPIEAKIKKDRRGLGA  44



Lambda      K        H        a         alpha
   0.311    0.127    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00021824

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396249 pfam01585, G-patch, G-patch domain. This domain is fou...  58.3    7e-12


>CDD:396249 pfam01585, G-patch, G-patch domain.  This domain is found in 
a number of RNA binding proteins, and is also found in proteins 
that contain RNA binding domains. This suggests that this 
domain may have an RNA binding function. This domain has seven 
highly conserved glycines.
Length=45

 Score = 58.3 bits (142),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 24/44 (55%), Gaps = 0/44 (0%)

Query  444  TTSKGASLLSKMGWSAGSGLGAQGTGMTAPIATEVYAQGVGLGA  487
            T++ G  LL KMGW  G GLG    G+  PI  ++     GLGA
Sbjct  1    TSNIGFKLLQKMGWKEGQGLGKNEQGIAEPIEAKIKKDRRGLGA  44



Lambda      K        H        a         alpha
   0.311    0.127    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00026782

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396249 pfam01585, G-patch, G-patch domain. This domain is fou...  58.3    8e-12


>CDD:396249 pfam01585, G-patch, G-patch domain.  This domain is found in 
a number of RNA binding proteins, and is also found in proteins 
that contain RNA binding domains. This suggests that this 
domain may have an RNA binding function. This domain has seven 
highly conserved glycines.
Length=45

 Score = 58.3 bits (142),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 24/44 (55%), Gaps = 0/44 (0%)

Query  461  TTSKGASLLSKMGWSAGSGLGAQGTGMTAPIATEVYAQGVGLGA  504
            T++ G  LL KMGW  G GLG    G+  PI  ++     GLGA
Sbjct  1    TSNIGFKLLQKMGWKEGQGLGKNEQGIAEPIEAKIKKDRRGLGA  44



Lambda      K        H        a         alpha
   0.311    0.127    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00021827

Length=744
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463394 pfam11915, DUF3433, Protein of unknown function (DUF34...  96.8    1e-24


>CDD:463394 pfam11915, DUF3433, Protein of unknown function (DUF3433).  This 
is a family of functionally uncharacterized proteins. The 
family is found in eukaryotes, and represents the conserved 
central region of the member proteins.
Length=91

 Score = 96.8 bits (242),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 40/91 (44%), Positives = 59/91 (65%), Gaps = 1/91 (1%)

Query  522  FLYSFIPALIGNILFLSWQPIDVYFRALQPYATLSSPNGARAEQTLLLEYPASFPFQVTV  581
            FL++F+P L+  ++ L WQ ID   R LQP+  LS   GA A ++LLL+Y +  PF    
Sbjct  1    FLWTFLPTLLAVLIALLWQSIDFAVRRLQPFYQLS-RGGAPASRSLLLDYLSLLPFLALF  59

Query  582  QAVLNAHYKVAWISLMSIVSAALPILAGGVF  612
            +A+ N H+ VA  SL S++++ LPILA G+F
Sbjct  60   RALRNRHWLVALSSLASLLASLLPILASGLF  90


 Score = 62.9 bits (154),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 26/93 (28%), Positives = 42/93 (45%), Gaps = 3/93 (3%)

Query  212  FVIQFLPQILAAIITIWTFVIQAAVYRVIPFAIMA-TQTLQDQVIQKLPILSRNFLLPDW  270
            F+  FLP +LA +I +    I  AV R+ PF  ++       + +  L  LS    L  +
Sbjct  1    FLWTFLPTLLAVLIALLWQSIDFAVRRLQPFYQLSRGGAPASRSLL-LDYLSLLPFLALF  59

Query  271  SYFRHGEPLVGFALLTIWISNLIIIPLLSCFFQ  303
               R+   LV  + L   +++L+ I L S  F 
Sbjct  60   RALRNRHWLVALSSLASLLASLLPI-LASGLFS  91



Lambda      K        H        a         alpha
   0.324    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0705    0.140     1.90     42.6     43.6 

Effective search space used: 945848800


Query= TCONS_00026783

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00021828

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00026784

Length=744
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463394 pfam11915, DUF3433, Protein of unknown function (DUF34...  96.8    1e-24


>CDD:463394 pfam11915, DUF3433, Protein of unknown function (DUF3433).  This 
is a family of functionally uncharacterized proteins. The 
family is found in eukaryotes, and represents the conserved 
central region of the member proteins.
Length=91

 Score = 96.8 bits (242),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 40/91 (44%), Positives = 59/91 (65%), Gaps = 1/91 (1%)

Query  522  FLYSFIPALIGNILFLSWQPIDVYFRALQPYATLSSPNGARAEQTLLLEYPASFPFQVTV  581
            FL++F+P L+  ++ L WQ ID   R LQP+  LS   GA A ++LLL+Y +  PF    
Sbjct  1    FLWTFLPTLLAVLIALLWQSIDFAVRRLQPFYQLS-RGGAPASRSLLLDYLSLLPFLALF  59

Query  582  QAVLNAHYKVAWISLMSIVSAALPILAGGVF  612
            +A+ N H+ VA  SL S++++ LPILA G+F
Sbjct  60   RALRNRHWLVALSSLASLLASLLPILASGLF  90


 Score = 62.9 bits (154),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 26/93 (28%), Positives = 42/93 (45%), Gaps = 3/93 (3%)

Query  212  FVIQFLPQILAAIITIWTFVIQAAVYRVIPFAIMA-TQTLQDQVIQKLPILSRNFLLPDW  270
            F+  FLP +LA +I +    I  AV R+ PF  ++       + +  L  LS    L  +
Sbjct  1    FLWTFLPTLLAVLIALLWQSIDFAVRRLQPFYQLSRGGAPASRSLL-LDYLSLLPFLALF  59

Query  271  SYFRHGEPLVGFALLTIWISNLIIIPLLSCFFQ  303
               R+   LV  + L   +++L+ I L S  F 
Sbjct  60   RALRNRHWLVALSSLASLLASLLPI-LASGLFS  91



Lambda      K        H        a         alpha
   0.324    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 945848800


Query= TCONS_00021830

Length=677
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399580 pfam06687, SUR7, SUR7/PalI family. This family consist...  65.0    2e-12


>CDD:399580 pfam06687, SUR7, SUR7/PalI family.  This family consists of several 
fungal-specific SUR7 proteins. Its activity regulates 
expression of RVS161, a homolog of human endophilin, suggesting 
a function for both in endocytosis. The protein carries 
four transmembrane domains and is thus likely to act as an 
anchoring protein for the eisosome to the plasma membrane. Eisosomes 
are the immobile protein complexes, that include the 
proteins Pil1 and Lsp1, which co-localize with sites of protein 
and lipid endocytosis at the plasma membrane. SUR7 protein 
may play a role in sporulation. This family also includes 
PalI which is part of a pH signal transduction cascade. Based 
on the similarity of PalI to the yeast Rim9 meiotic signal 
transduction component it has been suggested that PalI might 
be a membrane sensor for ambient pH.
Length=201

 Score = 65.0 bits (159),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 51/178 (29%), Positives = 74/178 (42%), Gaps = 42/178 (24%)

Query  27   TPIIQGIPLATFNHVD---------YGVFGFC-----KAGQCTNIHIGYTTDEISNTDNS  72
            +P+   I L   +            +GV+G+C         C+    GY  D + N   +
Sbjct  28   SPLNN-IYLLEADTSGISGAPDFYRWGVWGYCGNSDNNNTNCSKPSAGYPFDPLDNFGTN  86

Query  73   EFD-LPSSTRRSLSS-------ILIVHPVAAFLTLVCLCLAAAAHLHAPSHSPRYLLALL  124
                LPSS R +LS+       + IVH +A F T++ L L   A     SHS R LL  L
Sbjct  87   SNGKLPSSFRDTLSTYYYLSRFMFIVHIIALFFTVIALILGLLAIF---SHSRRGLLVNL  143

Query  125  ILLLPTLLVSLLAFLVDILLFV--------------PHLGWGG--WIVLGATILLVIS  166
            +L     L +LLA L+D  LFV                + W    W+ + A +L +IS
Sbjct  144  LLSFLAFLFTLLAALLDTALFVKARNAFKDYGISASLGVKWFAFLWLAVAAALLSLIS  201



Lambda      K        H        a         alpha
   0.315    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 861277360


Query= TCONS_00021829

Length=677
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399580 pfam06687, SUR7, SUR7/PalI family. This family consist...  65.0    2e-12


>CDD:399580 pfam06687, SUR7, SUR7/PalI family.  This family consists of several 
fungal-specific SUR7 proteins. Its activity regulates 
expression of RVS161, a homolog of human endophilin, suggesting 
a function for both in endocytosis. The protein carries 
four transmembrane domains and is thus likely to act as an 
anchoring protein for the eisosome to the plasma membrane. Eisosomes 
are the immobile protein complexes, that include the 
proteins Pil1 and Lsp1, which co-localize with sites of protein 
and lipid endocytosis at the plasma membrane. SUR7 protein 
may play a role in sporulation. This family also includes 
PalI which is part of a pH signal transduction cascade. Based 
on the similarity of PalI to the yeast Rim9 meiotic signal 
transduction component it has been suggested that PalI might 
be a membrane sensor for ambient pH.
Length=201

 Score = 65.0 bits (159),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 51/178 (29%), Positives = 74/178 (42%), Gaps = 42/178 (24%)

Query  27   TPIIQGIPLATFNHVD---------YGVFGFC-----KAGQCTNIHIGYTTDEISNTDNS  72
            +P+   I L   +            +GV+G+C         C+    GY  D + N   +
Sbjct  28   SPLNN-IYLLEADTSGISGAPDFYRWGVWGYCGNSDNNNTNCSKPSAGYPFDPLDNFGTN  86

Query  73   EFD-LPSSTRRSLSS-------ILIVHPVAAFLTLVCLCLAAAAHLHAPSHSPRYLLALL  124
                LPSS R +LS+       + IVH +A F T++ L L   A     SHS R LL  L
Sbjct  87   SNGKLPSSFRDTLSTYYYLSRFMFIVHIIALFFTVIALILGLLAIF---SHSRRGLLVNL  143

Query  125  ILLLPTLLVSLLAFLVDILLFV--------------PHLGWGG--WIVLGATILLVIS  166
            +L     L +LLA L+D  LFV                + W    W+ + A +L +IS
Sbjct  144  LLSFLAFLFTLLAALLDTALFVKARNAFKDYGISASLGVKWFAFLWLAVAAALLSLIS  201



Lambda      K        H        a         alpha
   0.315    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 861277360


Query= TCONS_00021831

Length=677
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399580 pfam06687, SUR7, SUR7/PalI family. This family consist...  65.0    2e-12


>CDD:399580 pfam06687, SUR7, SUR7/PalI family.  This family consists of several 
fungal-specific SUR7 proteins. Its activity regulates 
expression of RVS161, a homolog of human endophilin, suggesting 
a function for both in endocytosis. The protein carries 
four transmembrane domains and is thus likely to act as an 
anchoring protein for the eisosome to the plasma membrane. Eisosomes 
are the immobile protein complexes, that include the 
proteins Pil1 and Lsp1, which co-localize with sites of protein 
and lipid endocytosis at the plasma membrane. SUR7 protein 
may play a role in sporulation. This family also includes 
PalI which is part of a pH signal transduction cascade. Based 
on the similarity of PalI to the yeast Rim9 meiotic signal 
transduction component it has been suggested that PalI might 
be a membrane sensor for ambient pH.
Length=201

 Score = 65.0 bits (159),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 51/178 (29%), Positives = 74/178 (42%), Gaps = 42/178 (24%)

Query  27   TPIIQGIPLATFNHVD---------YGVFGFC-----KAGQCTNIHIGYTTDEISNTDNS  72
            +P+   I L   +            +GV+G+C         C+    GY  D + N   +
Sbjct  28   SPLNN-IYLLEADTSGISGAPDFYRWGVWGYCGNSDNNNTNCSKPSAGYPFDPLDNFGTN  86

Query  73   EFD-LPSSTRRSLSS-------ILIVHPVAAFLTLVCLCLAAAAHLHAPSHSPRYLLALL  124
                LPSS R +LS+       + IVH +A F T++ L L   A     SHS R LL  L
Sbjct  87   SNGKLPSSFRDTLSTYYYLSRFMFIVHIIALFFTVIALILGLLAIF---SHSRRGLLVNL  143

Query  125  ILLLPTLLVSLLAFLVDILLFV--------------PHLGWGG--WIVLGATILLVIS  166
            +L     L +LLA L+D  LFV                + W    W+ + A +L +IS
Sbjct  144  LLSFLAFLFTLLAALLDTALFVKARNAFKDYGISASLGVKWFAFLWLAVAAALLSLIS  201



Lambda      K        H        a         alpha
   0.315    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 861277360


Query= TCONS_00021832

Length=677
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399580 pfam06687, SUR7, SUR7/PalI family. This family consist...  65.0    2e-12


>CDD:399580 pfam06687, SUR7, SUR7/PalI family.  This family consists of several 
fungal-specific SUR7 proteins. Its activity regulates 
expression of RVS161, a homolog of human endophilin, suggesting 
a function for both in endocytosis. The protein carries 
four transmembrane domains and is thus likely to act as an 
anchoring protein for the eisosome to the plasma membrane. Eisosomes 
are the immobile protein complexes, that include the 
proteins Pil1 and Lsp1, which co-localize with sites of protein 
and lipid endocytosis at the plasma membrane. SUR7 protein 
may play a role in sporulation. This family also includes 
PalI which is part of a pH signal transduction cascade. Based 
on the similarity of PalI to the yeast Rim9 meiotic signal 
transduction component it has been suggested that PalI might 
be a membrane sensor for ambient pH.
Length=201

 Score = 65.0 bits (159),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 51/178 (29%), Positives = 74/178 (42%), Gaps = 42/178 (24%)

Query  27   TPIIQGIPLATFNHVD---------YGVFGFC-----KAGQCTNIHIGYTTDEISNTDNS  72
            +P+   I L   +            +GV+G+C         C+    GY  D + N   +
Sbjct  28   SPLNN-IYLLEADTSGISGAPDFYRWGVWGYCGNSDNNNTNCSKPSAGYPFDPLDNFGTN  86

Query  73   EFD-LPSSTRRSLSS-------ILIVHPVAAFLTLVCLCLAAAAHLHAPSHSPRYLLALL  124
                LPSS R +LS+       + IVH +A F T++ L L   A     SHS R LL  L
Sbjct  87   SNGKLPSSFRDTLSTYYYLSRFMFIVHIIALFFTVIALILGLLAIF---SHSRRGLLVNL  143

Query  125  ILLLPTLLVSLLAFLVDILLFV--------------PHLGWGG--WIVLGATILLVIS  166
            +L     L +LLA L+D  LFV                + W    W+ + A +L +IS
Sbjct  144  LLSFLAFLFTLLAALLDTALFVKARNAFKDYGISASLGVKWFAFLWLAVAAALLSLIS  201



Lambda      K        H        a         alpha
   0.315    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 861277360


Query= TCONS_00026786

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399580 pfam06687, SUR7, SUR7/PalI family. This family consist...  65.0    1e-12


>CDD:399580 pfam06687, SUR7, SUR7/PalI family.  This family consists of several 
fungal-specific SUR7 proteins. Its activity regulates 
expression of RVS161, a homolog of human endophilin, suggesting 
a function for both in endocytosis. The protein carries 
four transmembrane domains and is thus likely to act as an 
anchoring protein for the eisosome to the plasma membrane. Eisosomes 
are the immobile protein complexes, that include the 
proteins Pil1 and Lsp1, which co-localize with sites of protein 
and lipid endocytosis at the plasma membrane. SUR7 protein 
may play a role in sporulation. This family also includes 
PalI which is part of a pH signal transduction cascade. Based 
on the similarity of PalI to the yeast Rim9 meiotic signal 
transduction component it has been suggested that PalI might 
be a membrane sensor for ambient pH.
Length=201

 Score = 65.0 bits (159),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 51/178 (29%), Positives = 74/178 (42%), Gaps = 42/178 (24%)

Query  27   TPIIQGIPLATFNHVD---------YGVFGFC-----KAGQCTNIHIGYTTDEISNTDNS  72
            +P+   I L   +            +GV+G+C         C+    GY  D + N   +
Sbjct  28   SPLNN-IYLLEADTSGISGAPDFYRWGVWGYCGNSDNNNTNCSKPSAGYPFDPLDNFGTN  86

Query  73   EFD-LPSSTRRSLSS-------ILIVHPVAAFLTLVCLCLAAAAHLHAPSHSPRYLLALL  124
                LPSS R +LS+       + IVH +A F T++ L L   A     SHS R LL  L
Sbjct  87   SNGKLPSSFRDTLSTYYYLSRFMFIVHIIALFFTVIALILGLLAIF---SHSRRGLLVNL  143

Query  125  ILLLPTLLVSLLAFLVDILLFV--------------PHLGWGG--WIVLGATILLVIS  166
            +L     L +LLA L+D  LFV                + W    W+ + A +L +IS
Sbjct  144  LLSFLAFLFTLLAALLDTALFVKARNAFKDYGISASLGVKWFAFLWLAVAAALLSLIS  201



Lambda      K        H        a         alpha
   0.316    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 736753004


Query= TCONS_00021833

Length=677
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399580 pfam06687, SUR7, SUR7/PalI family. This family consist...  65.0    2e-12


>CDD:399580 pfam06687, SUR7, SUR7/PalI family.  This family consists of several 
fungal-specific SUR7 proteins. Its activity regulates 
expression of RVS161, a homolog of human endophilin, suggesting 
a function for both in endocytosis. The protein carries 
four transmembrane domains and is thus likely to act as an 
anchoring protein for the eisosome to the plasma membrane. Eisosomes 
are the immobile protein complexes, that include the 
proteins Pil1 and Lsp1, which co-localize with sites of protein 
and lipid endocytosis at the plasma membrane. SUR7 protein 
may play a role in sporulation. This family also includes 
PalI which is part of a pH signal transduction cascade. Based 
on the similarity of PalI to the yeast Rim9 meiotic signal 
transduction component it has been suggested that PalI might 
be a membrane sensor for ambient pH.
Length=201

 Score = 65.0 bits (159),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 51/178 (29%), Positives = 74/178 (42%), Gaps = 42/178 (24%)

Query  27   TPIIQGIPLATFNHVD---------YGVFGFC-----KAGQCTNIHIGYTTDEISNTDNS  72
            +P+   I L   +            +GV+G+C         C+    GY  D + N   +
Sbjct  28   SPLNN-IYLLEADTSGISGAPDFYRWGVWGYCGNSDNNNTNCSKPSAGYPFDPLDNFGTN  86

Query  73   EFD-LPSSTRRSLSS-------ILIVHPVAAFLTLVCLCLAAAAHLHAPSHSPRYLLALL  124
                LPSS R +LS+       + IVH +A F T++ L L   A     SHS R LL  L
Sbjct  87   SNGKLPSSFRDTLSTYYYLSRFMFIVHIIALFFTVIALILGLLAIF---SHSRRGLLVNL  143

Query  125  ILLLPTLLVSLLAFLVDILLFV--------------PHLGWGG--WIVLGATILLVIS  166
            +L     L +LLA L+D  LFV                + W    W+ + A +L +IS
Sbjct  144  LLSFLAFLFTLLAALLDTALFVKARNAFKDYGISASLGVKWFAFLWLAVAAALLSLIS  201



Lambda      K        H        a         alpha
   0.315    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 861277360


Query= TCONS_00021837

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462301 pfam07885, Ion_trans_2, Ion channel. This family inclu...  57.3    1e-11


>CDD:462301 pfam07885, Ion_trans_2, Ion channel.  This family includes the 
two membrane helix type ion channels found in bacteria.
Length=78

 Score = 57.3 bits (139),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 27/78 (35%), Positives = 42/78 (54%), Gaps = 2/78 (3%)

Query  155  ILFLIYLLGGAAVYARIEGWR--YLDAVYWADLTLLTIGIGDFVPETHKGRGLLFPYAVG  212
            I+ L+ L+ G   Y   EGW   +LDA+Y++ +TL T+G GD VP T  GR     Y + 
Sbjct  1    IVLLLVLIFGTVYYLLEEGWEWSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILI  60

Query  213  GILIPGLIVGSIRAQMLE  230
            GI +  + +  +   + E
Sbjct  61   GIPLFAIFLAVLGRFLTE  78



Lambda      K        H        a         alpha
   0.326    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00026788

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462301 pfam07885, Ion_trans_2, Ion channel. This family inclu...  58.4    7e-12


>CDD:462301 pfam07885, Ion_trans_2, Ion channel.  This family includes the 
two membrane helix type ion channels found in bacteria.
Length=78

 Score = 58.4 bits (142),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 27/78 (35%), Positives = 42/78 (54%), Gaps = 2/78 (3%)

Query  197  ILFLIYLLGGAAVYARIEGWR--YLDAVYWADLTLLTIGIGDFVPETHKGRGLLFPYAVG  254
            I+ L+ L+ G   Y   EGW   +LDA+Y++ +TL T+G GD VP T  GR     Y + 
Sbjct  1    IVLLLVLIFGTVYYLLEEGWEWSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILI  60

Query  255  GILIPGLIVGSIRAQMLE  272
            GI +  + +  +   + E
Sbjct  61   GIPLFAIFLAVLGRFLTE  78



Lambda      K        H        a         alpha
   0.324    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00026789

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462301 pfam07885, Ion_trans_2, Ion channel. This family inclu...  63.4    3e-13


>CDD:462301 pfam07885, Ion_trans_2, Ion channel.  This family includes the 
two membrane helix type ion channels found in bacteria.
Length=78

 Score = 63.4 bits (155),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 0/72 (0%)

Query  278  VWTMLWVLGAIAFWLPGQNEKLTYFEALYFAYTTLFTIGYGDFHATSEWERPFFVFWTLL  337
            +  +L ++    ++L  +  + ++ +ALYF++ TL T+GYGD    ++  R F +F+ L+
Sbjct  1    IVLLLVLIFGTVYYLLEEGWEWSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILI  60

Query  338  AVPTVTLLIANV  349
             +P   + +A +
Sbjct  61   GIPLFAIFLAVL  72


 Score = 57.7 bits (140),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 27/78 (35%), Positives = 42/78 (54%), Gaps = 2/78 (3%)

Query  155  ILFLIYLLGGAAVYARIEGWR--YLDAVYWADLTLLTIGIGDFVPETHKGRGLLFPYAVG  212
            I+ L+ L+ G   Y   EGW   +LDA+Y++ +TL T+G GD VP T  GR     Y + 
Sbjct  1    IVLLLVLIFGTVYYLLEEGWEWSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILI  60

Query  213  GILIPGLIVGSIRAQMLE  230
            GI +  + +  +   + E
Sbjct  61   GIPLFAIFLAVLGRFLTE  78



Lambda      K        H        a         alpha
   0.324    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599678264


Query= TCONS_00021835

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462301 pfam07885, Ion_trans_2, Ion channel. This family inclu...  56.5    2e-11


>CDD:462301 pfam07885, Ion_trans_2, Ion channel.  This family includes the 
two membrane helix type ion channels found in bacteria.
Length=78

 Score = 56.5 bits (137),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 27/78 (35%), Positives = 42/78 (54%), Gaps = 2/78 (3%)

Query  109  ILFLIYLLGGAAVYARIEGWR--YLDAVYWADLTLLTIGIGDFVPETHKGRGLLFPYAVG  166
            I+ L+ L+ G   Y   EGW   +LDA+Y++ +TL T+G GD VP T  GR     Y + 
Sbjct  1    IVLLLVLIFGTVYYLLEEGWEWSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILI  60

Query  167  GILIPGLIVGSIRAQMLE  184
            GI +  + +  +   + E
Sbjct  61   GIPLFAIFLAVLGRFLTE  78



Lambda      K        H        a         alpha
   0.328    0.143    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00021836

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462301 pfam07885, Ion_trans_2, Ion channel. This family inclu...  58.8    6e-12


>CDD:462301 pfam07885, Ion_trans_2, Ion channel.  This family includes the 
two membrane helix type ion channels found in bacteria.
Length=78

 Score = 58.8 bits (143),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 43/73 (59%), Gaps = 0/73 (0%)

Query  278  VWTMLWVLGAIAFWLPGQNEKLTYFEALYFAYTTLFTIGYGDFHATSEWERPFFVFWTLL  337
            +  +L ++    ++L  +  + ++ +ALYF++ TL T+GYGD    ++  R F +F+ L+
Sbjct  1    IVLLLVLIFGTVYYLLEEGWEWSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILI  60

Query  338  AVPTVTLLIANVG  350
             +P   + +A +G
Sbjct  61   GIPLFAIFLAVLG  73



Lambda      K        H        a         alpha
   0.328    0.141    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00021838

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462301 pfam07885, Ion_trans_2, Ion channel. This family inclu...  58.4    7e-12


>CDD:462301 pfam07885, Ion_trans_2, Ion channel.  This family includes the 
two membrane helix type ion channels found in bacteria.
Length=78

 Score = 58.4 bits (142),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 27/78 (35%), Positives = 42/78 (54%), Gaps = 2/78 (3%)

Query  197  ILFLIYLLGGAAVYARIEGWR--YLDAVYWADLTLLTIGIGDFVPETHKGRGLLFPYAVG  254
            I+ L+ L+ G   Y   EGW   +LDA+Y++ +TL T+G GD VP T  GR     Y + 
Sbjct  1    IVLLLVLIFGTVYYLLEEGWEWSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILI  60

Query  255  GILIPGLIVGSIRAQMLE  272
            GI +  + +  +   + E
Sbjct  61   GIPLFAIFLAVLGRFLTE  78



Lambda      K        H        a         alpha
   0.324    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00026791

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462301 pfam07885, Ion_trans_2, Ion channel. This family inclu...  58.8    5e-12


>CDD:462301 pfam07885, Ion_trans_2, Ion channel.  This family includes the 
two membrane helix type ion channels found in bacteria.
Length=78

 Score = 58.8 bits (143),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 27/78 (35%), Positives = 42/78 (54%), Gaps = 2/78 (3%)

Query  197  ILFLIYLLGGAAVYARIEGWR--YLDAVYWADLTLLTIGIGDFVPETHKGRGLLFPYAVG  254
            I+ L+ L+ G   Y   EGW   +LDA+Y++ +TL T+G GD VP T  GR     Y + 
Sbjct  1    IVLLLVLIFGTVYYLLEEGWEWSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILI  60

Query  255  GILIPGLIVGSIRAQMLE  272
            GI +  + +  +   + E
Sbjct  61   GIPLFAIFLAVLGRFLTE  78



Lambda      K        H        a         alpha
   0.324    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00026792

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462301 pfam07885, Ion_trans_2, Ion channel. This family inclu...  56.5    2e-11


>CDD:462301 pfam07885, Ion_trans_2, Ion channel.  This family includes the 
two membrane helix type ion channels found in bacteria.
Length=78

 Score = 56.5 bits (137),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 27/78 (35%), Positives = 42/78 (54%), Gaps = 2/78 (3%)

Query  109  ILFLIYLLGGAAVYARIEGWR--YLDAVYWADLTLLTIGIGDFVPETHKGRGLLFPYAVG  166
            I+ L+ L+ G   Y   EGW   +LDA+Y++ +TL T+G GD VP T  GR     Y + 
Sbjct  1    IVLLLVLIFGTVYYLLEEGWEWSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILI  60

Query  167  GILIPGLIVGSIRAQMLE  184
            GI +  + +  +   + E
Sbjct  61   GIPLFAIFLAVLGRFLTE  78



Lambda      K        H        a         alpha
   0.328    0.143    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00021839

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462301 pfam07885, Ion_trans_2, Ion channel. This family inclu...  56.5    2e-11


>CDD:462301 pfam07885, Ion_trans_2, Ion channel.  This family includes the 
two membrane helix type ion channels found in bacteria.
Length=78

 Score = 56.5 bits (137),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 27/78 (35%), Positives = 42/78 (54%), Gaps = 2/78 (3%)

Query  109  ILFLIYLLGGAAVYARIEGWR--YLDAVYWADLTLLTIGIGDFVPETHKGRGLLFPYAVG  166
            I+ L+ L+ G   Y   EGW   +LDA+Y++ +TL T+G GD VP T  GR     Y + 
Sbjct  1    IVLLLVLIFGTVYYLLEEGWEWSFLDALYFSFVTLTTVGYGDIVPLTDAGRLFTIFYILI  60

Query  167  GILIPGLIVGSIRAQMLE  184
            GI +  + +  +   + E
Sbjct  61   GIPLFAIFLAVLGRFLTE  78



Lambda      K        H        a         alpha
   0.328    0.143    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00026793

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.147    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00021840

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00021841

Length=157
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462038 pfam06912, DUF1275, Protein of unknown function (DUF12...  59.5    3e-12


>CDD:462038 pfam06912, DUF1275, Protein of unknown function (DUF1275).  This 
family consists of several hypothetical bacterial proteins 
of around 200 residues in length. The function of this family 
is unknown although most members have 6 TM regions, and 
may be putative permeases.
Length=202

 Score = 59.5 bits (145),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 45/131 (34%), Positives = 57/131 (44%), Gaps = 20/131 (15%)

Query  28   GNTVFIALGASGQPVYPAYLWAKSLAA--VAVFILSMIVHIYFSRLLGPRRRSTLILSFS  85
            GNTV + L  +G     A L   +L A  +  F+  ++      R LG  RR  L+L   
Sbjct  29   GNTVLLGLALAGGNWLAALLALLALLAFVLGAFLAGLLGR--RFRRLGRWRRLVLLLE--  84

Query  86   AQTLALMAAAILVETGAVSRRAENPRAPIQWMQILPISLLAFQAAGQIVASRILAYDEIP  145
               L L+AAA LV  G V               +L I+LLAF    Q    R L+  EI 
Sbjct  85   --ALLLLAAAFLVPLGGV------------APNLLAIALLAFAMGLQNATFRRLSGAEIA  130

Query  146  TVVLTTLLCDL  156
            T VLT  L DL
Sbjct  131  TTVLTGNLTDL  141



Lambda      K        H        a         alpha
   0.324    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00021842

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395302 pfam00378, ECH_1, Enoyl-CoA hydratase/isomerase. This ...  104     2e-27


>CDD:395302 pfam00378, ECH_1, Enoyl-CoA hydratase/isomerase.  This family 
contains a diverse set of enzymes including: enoyl-CoA hydratase, 
napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA 
dehydratase and dodecanoyl-CoA delta-isomerase.
Length=251

 Score = 104 bits (261),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 67/215 (31%), Positives = 98/215 (46%), Gaps = 33/215 (15%)

Query  8    TTQDGITTITINRPHRRNAVDPPTAKALYNALLAFDADPAQKICILTG------AGADLH  61
                G+  IT+NRP   NA+       L  AL     DP+ +  +LTG      AGADL 
Sbjct  1    EINAGVAVITLNRPEAVNALSAELITELIQALEKLRTDPSVRAVVLTGGDKAFCAGADLK  60

Query  62   AVAAAG----TGSSPSTLSTQENLQPVPVASGKNEQVPSLGPMGPTRLHLSKPLIAAIAG  117
             +   G         + L     L   P                       KP+IAA+ G
Sbjct  61   EMYGEGPAHQALYRENVLDLWTLLYTCP-----------------------KPVIAAVNG  97

Query  118  HAVAGGLELALLADLRVVEEDAVLGVFCRRWGVPLIDGGTVRLQAIVGLGRALDLILTGR  177
            +A+ GG ELAL  D+ +  ++A  G+   + G+    GGT RL  I+G  +A++++L GR
Sbjct  98   YAIGGGCELALACDIIIAADNASFGLNETKLGIIPGAGGTDRLPRIIGHSKAMEMLLLGR  157

Query  178  GVGAREALDMGLVSRVVARGKAVEEAMVLARDLMR  212
             + A+EAL  GLV +VV   + ++EA  LA  L  
Sbjct  158  RISAQEALKWGLVDKVVPEDQLLDEARELAEKLAE  192



Lambda      K        H        a         alpha
   0.320    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00021843

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395302 pfam00378, ECH_1, Enoyl-CoA hydratase/isomerase. This ...  104     2e-27


>CDD:395302 pfam00378, ECH_1, Enoyl-CoA hydratase/isomerase.  This family 
contains a diverse set of enzymes including: enoyl-CoA hydratase, 
napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA 
dehydratase and dodecanoyl-CoA delta-isomerase.
Length=251

 Score = 104 bits (261),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 67/215 (31%), Positives = 98/215 (46%), Gaps = 33/215 (15%)

Query  8    TTQDGITTITINRPHRRNAVDPPTAKALYNALLAFDADPAQKICILTG------AGADLH  61
                G+  IT+NRP   NA+       L  AL     DP+ +  +LTG      AGADL 
Sbjct  1    EINAGVAVITLNRPEAVNALSAELITELIQALEKLRTDPSVRAVVLTGGDKAFCAGADLK  60

Query  62   AVAAAG----TGSSPSTLSTQENLQPVPVASGKNEQVPSLGPMGPTRLHLSKPLIAAIAG  117
             +   G         + L     L   P                       KP+IAA+ G
Sbjct  61   EMYGEGPAHQALYRENVLDLWTLLYTCP-----------------------KPVIAAVNG  97

Query  118  HAVAGGLELALLADLRVVEEDAVLGVFCRRWGVPLIDGGTVRLQAIVGLGRALDLILTGR  177
            +A+ GG ELAL  D+ +  ++A  G+   + G+    GGT RL  I+G  +A++++L GR
Sbjct  98   YAIGGGCELALACDIIIAADNASFGLNETKLGIIPGAGGTDRLPRIIGHSKAMEMLLLGR  157

Query  178  GVGAREALDMGLVSRVVARGKAVEEAMVLARDLMR  212
             + A+EAL  GLV +VV   + ++EA  LA  L  
Sbjct  158  RISAQEALKWGLVDKVVPEDQLLDEARELAEKLAE  192



Lambda      K        H        a         alpha
   0.320    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00021844

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462038 pfam06912, DUF1275, Protein of unknown function (DUF12...  111     3e-30


>CDD:462038 pfam06912, DUF1275, Protein of unknown function (DUF1275).  This 
family consists of several hypothetical bacterial proteins 
of around 200 residues in length. The function of this family 
is unknown although most members have 6 TM regions, and 
may be putative permeases.
Length=202

 Score = 111 bits (279),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 99/223 (44%), Gaps = 26/223 (12%)

Query  62   LIVCGFVSGLVDGLCF-NAWGSFASMQTAEGNTVFIALGASGQPVYPAYLWAKSLAA--V  118
             ++  FV+G VD   F    G FAS QT  GNTV + L  +G     A L   +L A  +
Sbjct  1    ALLLAFVAGFVDAYGFLLRGGVFASAQT--GNTVLLGLALAGGNWLAALLALLALLAFVL  58

Query  119  AVFILSMIVHIYFSRLLGPRRRSTLILSFSAQTLALMAAAILVETGAVSRRAENPRAPIQ  178
              F+  ++      R LG  RR  L+L      L L+AAA LV  G V            
Sbjct  59   GAFLAGLLGR--RFRRLGRWRRLVLLLE----ALLLLAAAFLVPLGGV------------  100

Query  179  WMQILPISLLAFQAAGQIVASRILAYDEIPTVVLTTLLCDLIVD--KDLLARGWTSNPRR  236
               +L I+LLAF    Q    R L+  EI T VLT  L DL +D    L      +  +R
Sbjct  101  APNLLAIALLAFAMGLQNATFRRLSGAEIATTVLTGNLTDLGIDLADKLGLALKKALAKR  160

Query  237  NRRVGAFLALFLGAMTAGGLSKVTDMAASLWFAMGLKLGIVIA  279
            NRR+   LA  LGA+    L K    A +LW A  L L + + 
Sbjct  161  NRRLAIILAFLLGAVLGALLYKRL-GAGALWVAAALLLILALL  202



Lambda      K        H        a         alpha
   0.324    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00021845

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433175 pfam13398, Peptidase_M50B, Peptidase M50B-like. This i...  190     2e-61


>CDD:433175 pfam13398, Peptidase_M50B, Peptidase M50B-like.  This is a family 
of bacterial and plant peptidases in the same family as 
MEROPS:M50B.
Length=194

 Score = 190 bits (486),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 82/199 (41%), Positives = 112/199 (56%), Gaps = 11/199 (6%)

Query  45   VIALLWNLPYVRWSLWPFKMLVIAFHEFGHAITACCTGGRVKSISLDPHEGGVTHMQGGI  104
             + ++W  P +R    PF++LV  FHE GHA+ A  TGGRVK I L     GVT  +G  
Sbjct  1    ALVVVWPPPILR----PFRLLVTFFHELGHALAALLTGGRVKGIELHSDGSGVTVSRGRP  56

Query  105  S----AITLPAGYLGSSIIGALLIFAGFDIVASKVASIILGVCFLLTLWWARRDWLTIVT  160
                  +TLPAGYLG ++ G LLI   F       A + LGV  LL L    R+   +V 
Sbjct  57   GGLGMILTLPAGYLGPALWGLLLILLSFS--GRARALLWLGVLLLLVLLLYVRNLFGLVL  114

Query  161  ILMAVGLLVACWFIAHGEALRWVVLFIGVMSALYSVWDICDDLILRKVNTSDASVFAQRY  220
            +L+  GLL+A W++A  + L +  LF+GV   L +V DI DDLI R+   SDA   A+  
Sbjct  115  VLLTGGLLLAVWWLAPPQLLAFFALFLGVFLLLGAVRDI-DDLIRRRAPDSDADQLARLT  173

Query  221  GGSSRCWGVIWSIISLGFM  239
            G  +  WGV+W ++SLGF+
Sbjct  174  GLPAWLWGVLWLLVSLGFL  192



Lambda      K        H        a         alpha
   0.328    0.139    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00021846

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433175 pfam13398, Peptidase_M50B, Peptidase M50B-like. This i...  126     3e-36


>CDD:433175 pfam13398, Peptidase_M50B, Peptidase M50B-like.  This is a family 
of bacterial and plant peptidases in the same family as 
MEROPS:M50B.
Length=194

 Score = 126 bits (320),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 59/154 (38%), Positives = 81/154 (53%), Gaps = 13/154 (8%)

Query  45   VIALLWNLPYVRWSLWPFKMLVIAFHEFGHAITACCTGGRVKSISLDPHEGGVTHMQGGI  104
             + ++W  P +R    PF++LV  FHE GHA+ A  TGGRVK I L     GVT  +G  
Sbjct  1    ALVVVWPPPILR----PFRLLVTFFHELGHALAALLTGGRVKGIELHSDGSGVTVSRGRP  56

Query  105  S----AITLPAGYLGSSIIGALLIFAGFDIVASKVASIILGVCFLLTLWWARRDWLTIVT  160
                  +TLPAGYLG ++ G LLI   F       A + LGV  LL L    R+   +V 
Sbjct  57   GGLGMILTLPAGYLGPALWGLLLILLSFS--GRARALLWLGVLLLLVLLLYVRNLFGLVL  114

Query  161  ILMAVGLLVACWFIAHGEALRWV---VVCFSLLS  191
            +L+  GLL+A W++A  + L +    +  F LL 
Sbjct  115  VLLTGGLLLAVWWLAPPQLLAFFALFLGVFLLLG  148



Lambda      K        H        a         alpha
   0.329    0.139    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0777    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00026795

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433175 pfam13398, Peptidase_M50B, Peptidase M50B-like. This i...  178     7e-58


>CDD:433175 pfam13398, Peptidase_M50B, Peptidase M50B-like.  This is a family 
of bacterial and plant peptidases in the same family as 
MEROPS:M50B.
Length=194

 Score = 178 bits (455),  Expect = 7e-58, Method: Composition-based stats.
 Identities = 77/180 (43%), Positives = 102/180 (57%), Gaps = 7/180 (4%)

Query  1    MLVIAFHEFGHAITACCTGGRVKSISLDPHEGGVTHMQGGIS----AITLPAGYLGSSII  56
            +LV  FHE GHA+ A  TGGRVK I L     GVT  +G        +TLPAGYLG ++ 
Sbjct  16   LLVTFFHELGHALAALLTGGRVKGIELHSDGSGVTVSRGRPGGLGMILTLPAGYLGPALW  75

Query  57   GALLIFAGFDIVASKVASIILGVCFLLTLWWARRDWLTIVTILMAVGLLVACWFIAHGEA  116
            G LLI   F       A + LGV  LL L    R+   +V +L+  GLL+A W++A  + 
Sbjct  76   GLLLILLSFS--GRARALLWLGVLLLLVLLLYVRNLFGLVLVLLTGGLLLAVWWLAPPQL  133

Query  117  LRWVVLFIGVMSALYSVWDICDDLILRKVNTSDASVFAQRYGGSSRCWGVIWSIISLGFM  176
            L +  LF+GV   L +V DI DDLI R+   SDA   A+  G  +  WGV+W ++SLGF+
Sbjct  134  LAFFALFLGVFLLLGAVRDI-DDLIRRRAPDSDADQLARLTGLPAWLWGVLWLLVSLGFL  192



Lambda      K        H        a         alpha
   0.329    0.141    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00021847

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433175 pfam13398, Peptidase_M50B, Peptidase M50B-like. This i...  145     1e-43


>CDD:433175 pfam13398, Peptidase_M50B, Peptidase M50B-like.  This is a family 
of bacterial and plant peptidases in the same family as 
MEROPS:M50B.
Length=194

 Score = 145 bits (369),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 64/159 (40%), Positives = 87/159 (55%), Gaps = 10/159 (6%)

Query  45   VIALLWNLPYVRWSLWPFKMLVIAFHEFGHAITACCTGGRVKSISLDPHEGGVTHMQGGI  104
             + ++W  P +R    PF++LV  FHE GHA+ A  TGGRVK I L     GVT  +G  
Sbjct  1    ALVVVWPPPILR----PFRLLVTFFHELGHALAALLTGGRVKGIELHSDGSGVTVSRGRP  56

Query  105  S----AITLPAGYLGSSIIGALLIFAGFDIVASKVASIILGVCFLLTLWWARRDWLTIVT  160
                  +TLPAGYLG ++ G LLI   F       A + LGV  LL L    R+   +V 
Sbjct  57   GGLGMILTLPAGYLGPALWGLLLILLSFS--GRARALLWLGVLLLLVLLLYVRNLFGLVL  114

Query  161  ILMAVGLLVACWFIAHGEALRWVVLFIGVMSALYSVWDI  199
            +L+  GLL+A W++A  + L +  LF+GV   L +V DI
Sbjct  115  VLLTGGLLLAVWWLAPPQLLAFFALFLGVFLLLGAVRDI  153



Lambda      K        H        a         alpha
   0.326    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00021848

Length=266


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00021849

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00021850

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427143 pfam03109, ABC1, ABC1 family. This family includes ABC...  137     1e-38


>CDD:427143 pfam03109, ABC1, ABC1 family.  This family includes ABC1 from 
yeast and AarF from E. coli. These proteins have a nuclear 
or mitochondrial subcellular location in eukaryotes. The exact 
molecular functions of these proteins is not clear, however 
yeast ABC1 suppresses a cytochrome b mRNA translation defect 
and is essential for the electron transfer in the bc 1 complex 
and E. coli AarF is required for ubiquinone production. 
It has been suggested that members of the ABC1 family are 
novel chaperonins. These proteins are unrelated to the ABC 
transporter proteins.
Length=245

 Score = 137 bits (347),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 54/203 (27%), Positives = 87/203 (43%), Gaps = 62/203 (31%)

Query  24   LVPYISERLFLETDFENEATNSETMAKLVAGESRLRGRVYIPKIYRELSSKRVMTAEWIE  83
            LV    + L  E DF  EA N+E   +  A +      VY+PK+Y EL+++RV+T E+++
Sbjct  97   LVDEFRKSLPQELDFLREAANAEKFRENFADDPD----VYVPKVYWELTTERVLTMEYVD  152

Query  84   GVRLWDRESITRPWLGGWWEGSPGYQGTPLDAPKAEDPVTRVARNPNLAKIKPERNHWRG  143
            G+++ D ++++                                                 
Sbjct  153  GIKIDDLDALSE------------------------------------------------  164

Query  144  WNGKGGLGLSLKDVMTTMVDLFSAQMFLWGWVHCDPHPGNIFIRRKPSGQAELVLIDHGL  203
                   G+  K++   +V+LF  Q+F  G+ H DPHPGNI +R+       +VL+D GL
Sbjct  165  ------AGIDRKEIARRLVELFLEQIFRDGFFHADPHPGNILVRKDG----RIVLLDFGL  214

Query  204  YIHMDPNFRHQYARFWKALLAFD  226
               +D  FR  YA    AL+  D
Sbjct  215  MGRLDEKFRRLYAELLLALVNRD  237



Lambda      K        H        a         alpha
   0.321    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00026797

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427143 pfam03109, ABC1, ABC1 family. This family includes ABC...  137     1e-38


>CDD:427143 pfam03109, ABC1, ABC1 family.  This family includes ABC1 from 
yeast and AarF from E. coli. These proteins have a nuclear 
or mitochondrial subcellular location in eukaryotes. The exact 
molecular functions of these proteins is not clear, however 
yeast ABC1 suppresses a cytochrome b mRNA translation defect 
and is essential for the electron transfer in the bc 1 complex 
and E. coli AarF is required for ubiquinone production. 
It has been suggested that members of the ABC1 family are 
novel chaperonins. These proteins are unrelated to the ABC 
transporter proteins.
Length=245

 Score = 137 bits (347),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 54/203 (27%), Positives = 87/203 (43%), Gaps = 62/203 (31%)

Query  24   LVPYISERLFLETDFENEATNSETMAKLVAGESRLRGRVYIPKIYRELSSKRVMTAEWIE  83
            LV    + L  E DF  EA N+E   +  A +      VY+PK+Y EL+++RV+T E+++
Sbjct  97   LVDEFRKSLPQELDFLREAANAEKFRENFADDPD----VYVPKVYWELTTERVLTMEYVD  152

Query  84   GVRLWDRESITRPWLGGWWEGSPGYQGTPLDAPKAEDPVTRVARNPNLAKIKPERNHWRG  143
            G+++ D ++++                                                 
Sbjct  153  GIKIDDLDALSE------------------------------------------------  164

Query  144  WNGKGGLGLSLKDVMTTMVDLFSAQMFLWGWVHCDPHPGNIFIRRKPSGQAELVLIDHGL  203
                   G+  K++   +V+LF  Q+F  G+ H DPHPGNI +R+       +VL+D GL
Sbjct  165  ------AGIDRKEIARRLVELFLEQIFRDGFFHADPHPGNILVRKDG----RIVLLDFGL  214

Query  204  YIHMDPNFRHQYARFWKALLAFD  226
               +D  FR  YA    AL+  D
Sbjct  215  MGRLDEKFRRLYAELLLALVNRD  237



Lambda      K        H        a         alpha
   0.321    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00026798

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427143 pfam03109, ABC1, ABC1 family. This family includes ABC...  137     1e-38


>CDD:427143 pfam03109, ABC1, ABC1 family.  This family includes ABC1 from 
yeast and AarF from E. coli. These proteins have a nuclear 
or mitochondrial subcellular location in eukaryotes. The exact 
molecular functions of these proteins is not clear, however 
yeast ABC1 suppresses a cytochrome b mRNA translation defect 
and is essential for the electron transfer in the bc 1 complex 
and E. coli AarF is required for ubiquinone production. 
It has been suggested that members of the ABC1 family are 
novel chaperonins. These proteins are unrelated to the ABC 
transporter proteins.
Length=245

 Score = 137 bits (347),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 54/203 (27%), Positives = 87/203 (43%), Gaps = 62/203 (31%)

Query  24   LVPYISERLFLETDFENEATNSETMAKLVAGESRLRGRVYIPKIYRELSSKRVMTAEWIE  83
            LV    + L  E DF  EA N+E   +  A +      VY+PK+Y EL+++RV+T E+++
Sbjct  97   LVDEFRKSLPQELDFLREAANAEKFRENFADDPD----VYVPKVYWELTTERVLTMEYVD  152

Query  84   GVRLWDRESITRPWLGGWWEGSPGYQGTPLDAPKAEDPVTRVARNPNLAKIKPERNHWRG  143
            G+++ D ++++                                                 
Sbjct  153  GIKIDDLDALSE------------------------------------------------  164

Query  144  WNGKGGLGLSLKDVMTTMVDLFSAQMFLWGWVHCDPHPGNIFIRRKPSGQAELVLIDHGL  203
                   G+  K++   +V+LF  Q+F  G+ H DPHPGNI +R+       +VL+D GL
Sbjct  165  ------AGIDRKEIARRLVELFLEQIFRDGFFHADPHPGNILVRKDG----RIVLLDFGL  214

Query  204  YIHMDPNFRHQYARFWKALLAFD  226
               +D  FR  YA    AL+  D
Sbjct  215  MGRLDEKFRRLYAELLLALVNRD  237



Lambda      K        H        a         alpha
   0.321    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00021852

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427143 pfam03109, ABC1, ABC1 family. This family includes ABC...  137     1e-38


>CDD:427143 pfam03109, ABC1, ABC1 family.  This family includes ABC1 from 
yeast and AarF from E. coli. These proteins have a nuclear 
or mitochondrial subcellular location in eukaryotes. The exact 
molecular functions of these proteins is not clear, however 
yeast ABC1 suppresses a cytochrome b mRNA translation defect 
and is essential for the electron transfer in the bc 1 complex 
and E. coli AarF is required for ubiquinone production. 
It has been suggested that members of the ABC1 family are 
novel chaperonins. These proteins are unrelated to the ABC 
transporter proteins.
Length=245

 Score = 137 bits (347),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 54/203 (27%), Positives = 87/203 (43%), Gaps = 62/203 (31%)

Query  24   LVPYISERLFLETDFENEATNSETMAKLVAGESRLRGRVYIPKIYRELSSKRVMTAEWIE  83
            LV    + L  E DF  EA N+E   +  A +      VY+PK+Y EL+++RV+T E+++
Sbjct  97   LVDEFRKSLPQELDFLREAANAEKFRENFADDPD----VYVPKVYWELTTERVLTMEYVD  152

Query  84   GVRLWDRESITRPWLGGWWEGSPGYQGTPLDAPKAEDPVTRVARNPNLAKIKPERNHWRG  143
            G+++ D ++++                                                 
Sbjct  153  GIKIDDLDALSE------------------------------------------------  164

Query  144  WNGKGGLGLSLKDVMTTMVDLFSAQMFLWGWVHCDPHPGNIFIRRKPSGQAELVLIDHGL  203
                   G+  K++   +V+LF  Q+F  G+ H DPHPGNI +R+       +VL+D GL
Sbjct  165  ------AGIDRKEIARRLVELFLEQIFRDGFFHADPHPGNILVRKDG----RIVLLDFGL  214

Query  204  YIHMDPNFRHQYARFWKALLAFD  226
               +D  FR  YA    AL+  D
Sbjct  215  MGRLDEKFRRLYAELLLALVNRD  237



Lambda      K        H        a         alpha
   0.321    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00026799

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00021853

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00026800

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00021855

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00021854

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00021856

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00021857

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00021860

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00021859

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00021858

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00021861

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00026801

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00026802

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00021862

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00021863

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00021864

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00026803

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00026804

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00021865

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00021866

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00021867

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00021868

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00021869

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00021870

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00021872

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00021873

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00021871

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00026805

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00021874

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00021875

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00026806

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00026807

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00021876

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00021877

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00021878

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.129    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00021879

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.145    0.492    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00021880

Length=760
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      97.3    9e-24


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 97.3 bits (243),  Expect = 9e-24, Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 69/139 (50%), Gaps = 8/139 (6%)

Query  40   VDQSAITGESLAVDKYMADTCYYTTGCKRGKAYAIVTATAKQSFVGKTAALVQGAK-DQG  98
            VD+S +TGESL V+K   D  Y  T    G A A+VTAT + + +G+ A LV+ AK  + 
Sbjct  50   VDESLLTGESLPVEKKKGDMVYSGTVVVSGSAKAVVTATGEDTELGRIARLVEEAKSKKT  109

Query  99   HFKAVMDNIGTTLLVLVMFWILAAWIGGFYRHLKIATPEHEDNNLLHYTLILLIIGVPVG  158
              + ++D +G     +V+   LA ++   +               L   L +L+   P  
Sbjct  110  PLQRLLDRLGKYFSPVVLLIALAVFLLWLFV-------GGPPLRALLRALAVLVAACPCA  162

Query  159  LPVVTTTTLAVGAAYLAEQ  177
            LP+ T   LAVGA  LA++
Sbjct  163  LPLATPLALAVGARRLAKK  181



Lambda      K        H        a         alpha
   0.320    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 969131232


Query= TCONS_00021881

Length=988
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      133     3e-36


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 133 bits (336),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 65/227 (29%), Positives = 101/227 (44%), Gaps = 49/227 (22%)

Query  180  IAMKAVVIRDGQEQEILARELVTGDIIVVEEGTVIPADIRLICDYDKPEMFETYKEYLAT  239
            +   A V+RDG E+E+ A ELV GDI++++ G  +PAD R++                  
Sbjct  3    LPPTATVLRDGTEEEVPADELVPGDIVLLKPGERVPADGRIV------------------  44

Query  240  ANDDTLKEKDDDDEDGGIEARVGVSLIAVDQSAITGESLAVDKYMADTCYYTTGCKRGKA  299
                                  G +   VD+S +TGESL V+K   D  Y  T    G A
Sbjct  45   ---------------------EGSAS--VDESLLTGESLPVEKKKGDMVYSGTVVVSGSA  81

Query  300  YAIVTATAKQSFVGKTAALVQGAK-DQGHFKAVMDNIGTTLLVLVMFWILAAWIGGFYRH  358
             A+VTAT + + +G+ A LV+ AK  +   + ++D +G     +V+   LA ++   +  
Sbjct  82   KAVVTATGEDTELGRIARLVEEAKSKKTPLQRLLDRLGKYFSPVVLLIALAVFLLWLFV-  140

Query  359  LKIATPEHEDNNLLHYTLILLIIGVPVGLPVVTTTTLAVGAAYLAEQ  405
                         L   L +L+   P  LP+ T   LAVGA  LA++
Sbjct  141  ------GGPPLRALLRALAVLVAACPCALPLATPLALAVGARRLAKK  181



Lambda      K        H        a         alpha
   0.320    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1262961392


Query= TCONS_00021882

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462184 pfam07500, TFIIS_M, Transcription factor S-II (TFIIS),...  136     7e-41
CDD:426046 pfam01096, TFIIS_C, Transcription factor S-II (TFIIS)      78.0    2e-19


>CDD:462184 pfam07500, TFIIS_M, Transcription factor S-II (TFIIS), central 
domain.  Transcription elongation by RNA polymerase II is 
regulated by the general elongation factor TFIIS. This factor 
stimulates RNA polymerase II to transcribe through regions 
of DNA that promote the formation of stalled ternary complexes. 
TFIIS is composed of three structural domains, termed I, 
II, and III. The two C-terminal domains (II and III), this 
domain and pfam01096 are required for transcription activity.
Length=112

 Score = 136 bits (344),  Expect = 7e-41, Method: Composition-based stats.
 Identities = 50/113 (44%), Positives = 73/113 (65%), Gaps = 2/113 (2%)

Query  141  TSNKIRDSCIGLMYDGLCLNSTESPRA-VLSKASAVEAAAFNALGPETKEQYRTKIRSLY  199
            T +K+RD C  L+YD L  +STE+     L  A  +E A F   G  T ++Y+ KIRSL 
Sbjct  1    TGDKVRDKCRELLYDALAKDSTEASEEDALELAVEIEEALFKKFGG-TNKKYKNKIRSLL  59

Query  200  QNLKNKSNPTLRVRVLSNEVTPEQFVKMSHDELKSDEQREQERRIQKENMDKA  252
             NLK+K NP LR RVLS E++PE+ V MS +E+ S+E +++  +I+KE + +A
Sbjct  60   FNLKDKKNPDLRRRVLSGEISPEKLVTMSPEEMASEELKKEREKIEKEALKEA  112


>CDD:426046 pfam01096, TFIIS_C, Transcription factor S-II (TFIIS).  
Length=39

 Score = 78.0 bits (193),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 0/38 (0%)

Query  266  QCGKCGQRKVTYTEAQTRSADEPMTLFCTCMNCGKSWR  303
            +C KCG R+  + + QTRSADEPMT+F  C  CG  WR
Sbjct  2    KCPKCGNREAYFFQLQTRSADEPMTVFYVCTKCGHRWR  39



Lambda      K        H        a         alpha
   0.309    0.122    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00026808

Length=221


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00026809

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395871 pfam01095, Pectinesterase, Pectinesterase                  91.2    3e-21


>CDD:395871 pfam01095, Pectinesterase, Pectinesterase.  
Length=298

 Score = 91.2 bits (227),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 117/304 (38%), Gaps = 52/304 (17%)

Query  53   FSTVQAAIESLPNDNSKQT-ILILAGNYTEQLNVTRSGP-ITLLGQTDSVTDASKNKVTI  110
            F T+  A+ + P  + K+  I + AG Y E + V +    +  +G         K K  I
Sbjct  12   FKTINEALAAAPKKSEKRFVIYVKAGVYKENVEVPKKKTNVMFVGD-------GKGKTII  64

Query  111  TWAQANHDNTGQSVDNVFSSVLVVAPTLEASYTGSGPTGYPVPEDTPFGNTDFRVYNIDF  170
            T +    D         F +             G G                F   +I F
Sbjct  65   TGSLNFIDGG-----TTFRTATFAV-------VGDG----------------FIARDITF  96

Query  171  RNTWADYSDGPAHALSFSRANGGFYYCGFYSYQDTVYVGKLGNAYFYKN-IVAGQTDFLY  229
            RNT A      A AL        FY C F  YQDT+YV    N  FY+   + G  DF++
Sbjct  97   RNT-AGPEKHQAVALRVGSDLSVFYRCSFDGYQDTLYV--HSNRQFYRECDITGTVDFIF  153

Query  230  GFGTAWIQSSDILLRNCGGG----ITAWKGTNTTFENQYGVYIVDSTVRAANASIAPVIA  285
            G   A  Q+ +I+ R    G    ITA +G     +N  G+ I +  + A+   +     
Sbjct  154  GNAAAVFQNCNIVARKPMPGQKNTITA-QGRKDPNQNT-GISIQNCRITASPDLLPVKKT  211

Query  286  GKCALGRPWNSLHRSIFANTYEDGSIEPSGYIDWVVSGVSRFTNQTVM-AEYKAFGPGFN  344
             K  LGRPW    R++   +Y    I+P+G++ W       F   T+   EY   GPG  
Sbjct  212  TKTYLGRPWKEYSRTVIMQSYIGDVIDPAGWLPW----NGDFALDTLYYGEYMNTGPGSG  267

Query  345  ATGR  348
             + R
Sbjct  268  TSQR  271



Lambda      K        H        a         alpha
   0.317    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0786    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00021885

Length=422


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.131    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00021884

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460831 pfam03155, Alg6_Alg8, ALG6, ALG8 glycosyltransferase f...  300     2e-98


>CDD:460831 pfam03155, Alg6_Alg8, ALG6, ALG8 glycosyltransferase family. 
 N-linked (asparagine-linked) glycosylation of proteins is mediated 
by a highly conserved pathway in eukaryotes, in which 
a lipid (dolichol phosphate)-linked oligosaccharide is assembled 
at the endoplasmic reticulum membrane prior to the transfer 
of the oligosaccharide moiety to the target asparagine 
residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). 
The addition of the three glucose residues is the 
final series of steps in the synthesis of the oligosaccharide 
precursor. Alg6 transfers the first glucose residue, and 
Alg8 transfers the second one. In the human alg6 gene, a C->T 
transition, which causes Ala333 to be replaced with Val, has 
been identified as the cause of a congenital disorder of 
glycosylation, designated as type Ic OMIM:603147.
Length=477

 Score = 300 bits (771),  Expect = 2e-98, Method: Composition-based stats.
 Identities = 142/439 (32%), Positives = 205/439 (47%), Gaps = 76/439 (17%)

Query  1    MRGTVIASEYLVYIPAVVNFLRRYTRMQGVPAWSASIALVAILLQPATILIDHGHFQYNT  60
            MR TVI S+ L+YIPA++ F+R+             IA + ILL P  +LIDHGHFQYN 
Sbjct  88   MRLTVIVSDLLLYIPALLLFIRKSLS-GKSSKRQQFIAALLILLSPGLLLIDHGHFQYNG  146

Query  61   VMLGLVVASLDAILAGRMLWACLFFVGALGFKQMALYYAPVMFAFLLGVCIF----PRVR  116
             +LGL++ S+ A+L GR L   + F   L FK M LYYAP  F +LL          +  
Sbjct  147  FLLGLLLLSIAALLKGRYLLGAILFALLLNFKHMYLYYAPAYFVYLLRKYCLNFPIRKFN  206

Query  117  ILRLLNIAIITILAFALLFTPLLVAATNADARDYLSASAEPPLLQALPIKLSKDSFLYAP  176
             LRLL + +  +  FAL F P                                  FLY  
Sbjct  207  FLRLLKLGLTVLATFALSFGP----------------------------------FLY--  230

Query  177  VFQLMQIIHRVFPFARGLFEDKVA-NAWCAIHTFYKL---------------------HR  214
              QL Q++ R+FPF+RGLF D  A N WC  +   K+                       
Sbjct  231  SGQLPQVLSRLFPFSRGLFHDYWAPNFWCLYNFLDKVLIVLAPRLGLLVTRGLVGDTSFA  290

Query  215  FEASLLQRVSLGATLASILIPCGIIFRHPRASLLLPTLASVAWGFFLFSFQVHEKSVLLP  274
                +L +++L  TL + L     +F  P   L L  L   +  FFLFS+ VHEK++LL 
Sbjct  291  VLPQILPKLTLILTLLAQLPSLIKLFLRPSKRLFLLALTLCSLSFFLFSWHVHEKAILLV  350

Query  275  LLPMTLLLANDGGLSKDTRAWVGWANVLGSWTMYPLLKRDELRVPYFVMTGLWAYLMGLP  334
            LLP++LL   D        +   W + +G+++++PLL +D L +   V+T LW  L GL 
Sbjct  351  LLPLSLLALED----PRDLSLFRWLSNVGTFSLFPLLFKDGLLLIKVVLTLLWNILFGLA  406

Query  335  PTSLETYRSRTPGGESRPVSEPRILTKLLHFCFYLAMIVWH-VLDAFVPPPEGKPDLWVV  393
               L    +R P    R     R+  +LL+    + M+V H +L   VPPP   P L ++
Sbjct  407  LRKL----ARLPFPSLRVFLLDRL--ELLYLLSLIGMLVLHCLLHLLVPPPARYPFLPLM  460

Query  394  LNVLIGAGGFGIAYLWCMW  412
            L  +  +  FG+ Y + ++
Sbjct  461  LTSVYCS--FGVFYSFLLY  477



Lambda      K        H        a         alpha
   0.330    0.142    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 529127880


Query= TCONS_00026810

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00026811

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00026812

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00021886

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  79.6    5e-19


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 79.6 bits (197),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query  410  LFVGNIPFSANEDSVSELFGQSGTIVGIRLPTDPESGRPKGFGYVQFSSVDEARQAFNDL  469
            LFVGN+P    E+ + +LF + G I  IRL  D E+GR KGF +V+F   ++A +A   L
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  470  NGAELNGRPVR  480
            NG EL GR ++
Sbjct  60   NGKELGGRELK  70


 Score = 62.3 bits (152),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 30/70 (43%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query  304  LFVGNLSWNVDEEWLRQEFESFGELSGVRIVTDRDSGRSRGFGYVEYVNAADAAKAYNAK  363
            LFVGNL  +  EE L+  F  FG +  +R+V D   GRS+GF +VE+ +  DA KA  A 
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDET-GRSKGFAFVEFEDEEDAEKAIEAL  59

Query  364  KDTEIDGRKI  373
               E+ GR++
Sbjct  60   NGKELGGREL  69



Lambda      K        H        a         alpha
   0.293    0.116    0.298    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688900030


Query= TCONS_00021888

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  79.6    5e-19


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 79.6 bits (197),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query  410  LFVGNIPFSANEDSVSELFGQSGTIVGIRLPTDPESGRPKGFGYVQFSSVDEARQAFNDL  469
            LFVGN+P    E+ + +LF + G I  IRL  D E+GR KGF +V+F   ++A +A   L
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  470  NGAELNGRPVR  480
            NG EL GR ++
Sbjct  60   NGKELGGRELK  70


 Score = 62.3 bits (152),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 30/70 (43%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query  304  LFVGNLSWNVDEEWLRQEFESFGELSGVRIVTDRDSGRSRGFGYVEYVNAADAAKAYNAK  363
            LFVGNL  +  EE L+  F  FG +  +R+V D   GRS+GF +VE+ +  DA KA  A 
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDET-GRSKGFAFVEFEDEEDAEKAIEAL  59

Query  364  KDTEIDGRKI  373
               E+ GR++
Sbjct  60   NGKELGGREL  69



Lambda      K        H        a         alpha
   0.293    0.116    0.298    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688900030


Query= TCONS_00021887

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  79.6    5e-19


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 79.6 bits (197),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query  410  LFVGNIPFSANEDSVSELFGQSGTIVGIRLPTDPESGRPKGFGYVQFSSVDEARQAFNDL  469
            LFVGN+P    E+ + +LF + G I  IRL  D E+GR KGF +V+F   ++A +A   L
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  470  NGAELNGRPVR  480
            NG EL GR ++
Sbjct  60   NGKELGGRELK  70


 Score = 62.3 bits (152),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 30/70 (43%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query  304  LFVGNLSWNVDEEWLRQEFESFGELSGVRIVTDRDSGRSRGFGYVEYVNAADAAKAYNAK  363
            LFVGNL  +  EE L+  F  FG +  +R+V D   GRS+GF +VE+ +  DA KA  A 
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDET-GRSKGFAFVEFEDEEDAEKAIEAL  59

Query  364  KDTEIDGRKI  373
               E+ GR++
Sbjct  60   NGKELGGREL  69



Lambda      K        H        a         alpha
   0.293    0.116    0.298    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688900030


Query= TCONS_00026813

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  79.6    5e-19


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 79.6 bits (197),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query  410  LFVGNIPFSANEDSVSELFGQSGTIVGIRLPTDPESGRPKGFGYVQFSSVDEARQAFNDL  469
            LFVGN+P    E+ + +LF + G I  IRL  D E+GR KGF +V+F   ++A +A   L
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  470  NGAELNGRPVR  480
            NG EL GR ++
Sbjct  60   NGKELGGRELK  70


 Score = 62.3 bits (152),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 30/70 (43%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query  304  LFVGNLSWNVDEEWLRQEFESFGELSGVRIVTDRDSGRSRGFGYVEYVNAADAAKAYNAK  363
            LFVGNL  +  EE L+  F  FG +  +R+V D   GRS+GF +VE+ +  DA KA  A 
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRDET-GRSKGFAFVEFEDEEDAEKAIEAL  59

Query  364  KDTEIDGRKI  373
               E+ GR++
Sbjct  60   NGKELGGREL  69



Lambda      K        H        a         alpha
   0.293    0.116    0.298    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688900030


Query= TCONS_00026814

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00021889

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00021890

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00021892

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00021891

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00026815

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00026817

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00026818

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00026819

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00021894

Length=388


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00026820

Length=388


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00026821

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00021895

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.117    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00021896

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00026822

Length=388


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00026823

Length=388


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00026824

Length=388


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00021899

Length=388


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00021900

Length=184
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  87.3    4e-21


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 87.3 bits (217),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query  95   DTEMENCFLGILVEGRAETTASSLETAFLFLAVHPEVQAKARREIDRVCGPDKMPSWSDF  154
            D E+    L +   G  +TT+S+L  A   LA HPEVQ K R EID V G  + P++ D 
Sbjct  259  DEELRATVLELFFAG-TDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDDL  317

Query  155  PKLPYINCIIKESLRIRP  172
              +PY++ +IKE+LR+ P
Sbjct  318  QNMPYLDAVIKETLRLHP  335



Lambda      K        H        a         alpha
   0.322    0.137    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00021902

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  80.4    5e-19


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 80.4 bits (199),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 35/122 (29%), Positives = 58/122 (48%), Gaps = 20/122 (16%)

Query  2    LIPKDSIIIIPTWALHRDENVYPDPETYNPDRFLQHPGLAADYAGKGDPMKRDHYGY---  58
            LIPK +++I+  +ALHRD  V+P+PE ++P+RFL             +   R  + +   
Sbjct  355  LIPKGTLVIVNLYALHRDPEVFPNPEEFDPERFL-----------DENGKFRKSFAFLPF  403

Query  59   GGGRRVCPGIHVGERSLWRMIATALWAFEIGPKTDPLTGEVKRLDTSAYVETLNHHPEPY  118
            G G R C G  +    +   +AT L  FE+  +  P T      +T   +      P+PY
Sbjct  404  GAGPRNCLGERLARMEMKLFLATLLQNFEV--ELPPGTDPPDIDETPGLLL----PPKPY  457

Query  119  EV  120
            ++
Sbjct  458  KL  459



Lambda      K        H        a         alpha
   0.320    0.140    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00021903

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00021904

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425524 pfam00206, Lyase_1, Lyase                                  313     3e-105
CDD:464268 pfam14698, ASL_C2, Argininosuccinate lyase C-terminal....  112     4e-31 


>CDD:425524 pfam00206, Lyase_1, Lyase.  
Length=312

 Score = 313 bits (804),  Expect = 3e-105, Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 154/312 (49%), Gaps = 16/312 (5%)

Query  15   GRFTQGLDPLMVQYNQSLPYDRIFWKQDIAGSIAFARANTKSGILTQHEFSEIERGFKQI  74
            GRFT   D LM  +     ++    ++DI G  A  +A  K+ ++ + E + I +   ++
Sbjct  1    GRFTVPADALMGIFTDRSRFNFRLGEEDIKGLAALKKAAAKANVILKEEAAAIIKALDEV  60

Query  75   AEEWSTN-TFAVKESDEDIHTANERRLSEIIG------KEIGGKLHTGRSRNEQIATDMR  127
            AEE   +  F +K   E   TA    L+E+IG            +HTG+S N+Q+ T +R
Sbjct  61   AEEGKLDDQFPLKVWQEGSGTAVNMNLNEVIGELLGQLVHPNDHVHTGQSSNDQVPTALR  120

Query  128  LWLRDELR-KLDAVLCDLIKVSIARAEKELDFIMPGYTHLQKAQPVRWSHWLLSHATAFA  186
            L L+D L   L   L  LI     +A++  D + PG THLQ A PV     L  +A A  
Sbjct  121  LALKDALSEVLLPALRQLIDALKEKAKEFADIVKPGRTHLQDATPVTLGQELSGYAVALT  180

Query  187  SELQRLREVTRRVNRSPLGTGALAGNPFQIDRE---AMAAELGFDGLLY----NSMNAVA  239
             + +RL+++  R+   PLG G   G     D E    +A ELGF   L     NS  A +
Sbjct  181  RDRERLQQLLPRLLVLPLGGGTAVGTGLNADPEFAELVAKELGFFTGLPVKAPNSFEATS  240

Query  240  DRDFAMETMQWGSSFMLKISRWAEDLIIYSSLEFGFVRLSDAYST-GSSLMPQKKNADSL  298
            DRD  +E     +     +S++AEDL + SS   G V LS A    GSS+MP K N D L
Sbjct  241  DRDAVVELSGALALLATSLSKFAEDLRLLSSGPAGLVELSLAEGEPGSSIMPGKVNPDQL  300

Query  299  ELLRGKAGRAFG  310
            ELL GKAGR  G
Sbjct  301  ELLTGKAGRVMG  312


>CDD:464268 pfam14698, ASL_C2, Argininosuccinate lyase C-terminal.  This 
domain is found at the C-terminus of argininosuccinate lyase.
Length=68

 Score = 112 bits (283),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 37/67 (55%), Positives = 48/67 (72%), Gaps = 0/67 (0%)

Query  373  MLATEIADYLVRKGVPFREGHHISGRVVALAEKNNVPMDTLSLEQLKAIDARFDEDVQAC  432
              AT++ADYLVRKGVPFRE H I GR+V LAE+    ++ L+LE+L+AI   F+EDV   
Sbjct  2    STATDLADYLVRKGVPFREAHEIVGRLVRLAEEKGKDLEDLTLEELQAISPLFEEDVYEA  61

Query  433  LDYERAV  439
            LD E +V
Sbjct  62   LDPEASV  68



Lambda      K        H        a         alpha
   0.319    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 573605296


Query= TCONS_00026825

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425524 pfam00206, Lyase_1, Lyase                                  313     3e-105
CDD:464268 pfam14698, ASL_C2, Argininosuccinate lyase C-terminal....  112     4e-31 


>CDD:425524 pfam00206, Lyase_1, Lyase.  
Length=312

 Score = 313 bits (804),  Expect = 3e-105, Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 154/312 (49%), Gaps = 16/312 (5%)

Query  15   GRFTQGLDPLMVQYNQSLPYDRIFWKQDIAGSIAFARANTKSGILTQHEFSEIERGFKQI  74
            GRFT   D LM  +     ++    ++DI G  A  +A  K+ ++ + E + I +   ++
Sbjct  1    GRFTVPADALMGIFTDRSRFNFRLGEEDIKGLAALKKAAAKANVILKEEAAAIIKALDEV  60

Query  75   AEEWSTN-TFAVKESDEDIHTANERRLSEIIG------KEIGGKLHTGRSRNEQIATDMR  127
            AEE   +  F +K   E   TA    L+E+IG            +HTG+S N+Q+ T +R
Sbjct  61   AEEGKLDDQFPLKVWQEGSGTAVNMNLNEVIGELLGQLVHPNDHVHTGQSSNDQVPTALR  120

Query  128  LWLRDELR-KLDAVLCDLIKVSIARAEKELDFIMPGYTHLQKAQPVRWSHWLLSHATAFA  186
            L L+D L   L   L  LI     +A++  D + PG THLQ A PV     L  +A A  
Sbjct  121  LALKDALSEVLLPALRQLIDALKEKAKEFADIVKPGRTHLQDATPVTLGQELSGYAVALT  180

Query  187  SELQRLREVTRRVNRSPLGTGALAGNPFQIDRE---AMAAELGFDGLLY----NSMNAVA  239
             + +RL+++  R+   PLG G   G     D E    +A ELGF   L     NS  A +
Sbjct  181  RDRERLQQLLPRLLVLPLGGGTAVGTGLNADPEFAELVAKELGFFTGLPVKAPNSFEATS  240

Query  240  DRDFAMETMQWGSSFMLKISRWAEDLIIYSSLEFGFVRLSDAYST-GSSLMPQKKNADSL  298
            DRD  +E     +     +S++AEDL + SS   G V LS A    GSS+MP K N D L
Sbjct  241  DRDAVVELSGALALLATSLSKFAEDLRLLSSGPAGLVELSLAEGEPGSSIMPGKVNPDQL  300

Query  299  ELLRGKAGRAFG  310
            ELL GKAGR  G
Sbjct  301  ELLTGKAGRVMG  312


>CDD:464268 pfam14698, ASL_C2, Argininosuccinate lyase C-terminal.  This 
domain is found at the C-terminus of argininosuccinate lyase.
Length=68

 Score = 112 bits (283),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 37/67 (55%), Positives = 48/67 (72%), Gaps = 0/67 (0%)

Query  373  MLATEIADYLVRKGVPFREGHHISGRVVALAEKNNVPMDTLSLEQLKAIDARFDEDVQAC  432
              AT++ADYLVRKGVPFRE H I GR+V LAE+    ++ L+LE+L+AI   F+EDV   
Sbjct  2    STATDLADYLVRKGVPFREAHEIVGRLVRLAEEKGKDLEDLTLEELQAISPLFEEDVYEA  61

Query  433  LDYERAV  439
            LD E +V
Sbjct  62   LDPEASV  68



Lambda      K        H        a         alpha
   0.319    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 573605296


Query= TCONS_00026826

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395718 pfam00890, FAD_binding_2, FAD binding domain. This fam...  352     5e-119
CDD:460743 pfam02910, Succ_DH_flav_C, Fumarate reductase flavopro...  106     5e-28 


>CDD:395718 pfam00890, FAD_binding_2, FAD binding domain.  This family includes 
members that bind FAD. This family includes the flavoprotein 
subunits from succinate and fumarate dehydrogenase, 
aspartate oxidase and the alpha subunit of adenylylsulphate 
reductase.
Length=398

 Score = 352 bits (906),  Expect = 5e-119, Method: Composition-based stats.
 Identities = 154/370 (42%), Positives = 189/370 (51%), Gaps = 48/370 (13%)

Query  5    SMHPDDWRWHMYDTVKGSDWLGDQDAIHYMTREAPASVRELEGYGCPFSRTEDGLIYQRA  64
                D    H  DT+KG D L D   +      AP +V  LE  G PFSRTEDG +  R 
Sbjct  53   QGGIDSPELHPTDTLKGLDELADHPYVEAFVEAAPEAVDWLEALGVPFSRTEDGHLDLRP  112

Query  65   FGGQSKEFGKGGQAYRCCA-VADR-----TGHALLHTLYGQSLRHNTNYFIEYFALDLLM  118
             GG S         +R     ADR     TGHALL  L     +   ++     A DL++
Sbjct  113  LGGLSA-------TWRTPHDAADRRRGLGTGHALLARLLEGLRKAGVDFQPRTAADDLIV  165

Query  119  EDGECRGIIAYNQEDGTLHRFKAHH-TVLATGGYGR---------AYFSCTSAHTCTGDG  168
            EDG   G +  N+ +G   R +A    +LATGG+GR          Y   T+    TGDG
Sbjct  166  EDGRVTGAVVENRRNGREVRIRAIAAVLLATGGFGRLAELLLPAAGYADTTNPPANTGDG  225

Query  169  MAMVARAGLPNQD--LEFVQFHPTGIYG----AGCLITEGARGEGGYLLNSEGERFMERY  222
            +A+  RAG    D  +EFVQFHPT + G    +G LI E  RGEGG L+N +G RFM   
Sbjct  226  LALALRAGAALTDDLMEFVQFHPTSLVGIRLGSGLLI-EALRGEGGILVNKDGRRFM---  281

Query  223  APTAKDLASRDVVSRSMT-LEIREGRGVGPEKDHIYLQLSH-LPPELLHERLPGISETAS  280
                 +LASRDVVSR++T  EI EGRG      ++YL  S  L  E L   LP I+E A 
Sbjct  282  ----NELASRDVVSRAITRNEIDEGRG-----ANVYLDASGSLDAEGLEATLPAINEEAI  332

Query  281  IFAGVDVTKQPIPVLPTVHYNMGGIPTKYTGEVLTVDEQGNDKVVPGLYACGEAACVSVH  340
                VD   +PIPV P  HY MGG+ T   G VL      + + +PGLYA GE AC  VH
Sbjct  333  FGLDVDPYDRPIPVFPAQHYTMGGVRTDENGRVLD----ADGQPIPGLYAAGEVACGGVH  388

Query  341  GANRLGANSL  350
            GANRLG NSL
Sbjct  389  GANRLGGNSL  398


>CDD:460743 pfam02910, Succ_DH_flav_C, Fumarate reductase flavoprotein C-term. 
 This family contains fumarate reductases, succinate dehydrogenases 
and L-aspartate oxidases.
Length=129

 Score = 106 bits (267),  Expect = 5e-28, Method: Composition-based stats.
 Identities = 27/66 (41%), Positives = 42/66 (64%), Gaps = 0/66 (0%)

Query  405  RNAMQRAMQSDVSVFRTQESLDEGVQKITAIDKMFDQVGTKDRSMIWNSDLVETLELRNL  464
            R  +Q+ MQ +V VFRT+E L E ++KI  + + +  V   D+S ++N++L+E LEL NL
Sbjct  1    RRELQKTMQDNVGVFRTEEGLKEALEKIQELRERYKNVRVTDKSKVFNTELIEALELANL  60

Query  465  LTCAYV  470
            L  A  
Sbjct  61   LELAEA  66



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593513872


Query= TCONS_00021905

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395718 pfam00890, FAD_binding_2, FAD binding domain. This fam...  315     7e-105
CDD:460743 pfam02910, Succ_DH_flav_C, Fumarate reductase flavopro...  106     3e-28 


>CDD:395718 pfam00890, FAD_binding_2, FAD binding domain.  This family includes 
members that bind FAD. This family includes the flavoprotein 
subunits from succinate and fumarate dehydrogenase, 
aspartate oxidase and the alpha subunit of adenylylsulphate 
reductase.
Length=398

 Score = 315 bits (809),  Expect = 7e-105, Method: Composition-based stats.
 Identities = 145/341 (43%), Positives = 178/341 (52%), Gaps = 48/341 (14%)

Query  1    MTREAPASVRELEGYGCPFSRTEDGLIYQRAFGGQSKEFGKGGQAYRCCA-VADR-----  54
                AP +V  LE  G PFSRTEDG +  R  GG S         +R     ADR     
Sbjct  82   FVEAAPEAVDWLEALGVPFSRTEDGHLDLRPLGGLSA-------TWRTPHDAADRRRGLG  134

Query  55   TGHALLHTLYGQSLRHNTNYFIEYFALDLLMEDGECRGIIAYNQEDGTLHRFKAHH-TVL  113
            TGHALL  L     +   ++     A DL++EDG   G +  N+ +G   R +A    +L
Sbjct  135  TGHALLARLLEGLRKAGVDFQPRTAADDLIVEDGRVTGAVVENRRNGREVRIRAIAAVLL  194

Query  114  ATGGYGR---------AYFSCTSAHTCTGDGMAMVARAGLPNQD--LEFVQFHPTGIYG-  161
            ATGG+GR          Y   T+    TGDG+A+  RAG    D  +EFVQFHPT + G 
Sbjct  195  ATGGFGRLAELLLPAAGYADTTNPPANTGDGLALALRAGAALTDDLMEFVQFHPTSLVGI  254

Query  162  ---AGCLITEGARGEGGYLLNSEGERFMERYAPTAKDLASRDVVSRSMT-LEIREGRGVG  217
               +G LI E  RGEGG L+N +G RFM        +LASRDVVSR++T  EI EGRG  
Sbjct  255  RLGSGLLI-EALRGEGGILVNKDGRRFM-------NELASRDVVSRAITRNEIDEGRG--  304

Query  218  PEKDHIYLQLSH-LPPELLHERLPGISETASIFAGVDVTKQPIPVLPTVHYNMGGIPTKY  276
                ++YL  S  L  E L   LP I+E A     VD   +PIPV P  HY MGG+ T  
Sbjct  305  ---ANVYLDASGSLDAEGLEATLPAINEEAIFGLDVDPYDRPIPVFPAQHYTMGGVRTDE  361

Query  277  TGEVLTVDEQGNDKVVPGLYACGEAACVSVHGANRLGANSL  317
             G VL      + + +PGLYA GE AC  VHGANRLG NSL
Sbjct  362  NGRVLD----ADGQPIPGLYAAGEVACGGVHGANRLGGNSL  398


>CDD:460743 pfam02910, Succ_DH_flav_C, Fumarate reductase flavoprotein C-term. 
 This family contains fumarate reductases, succinate dehydrogenases 
and L-aspartate oxidases.
Length=129

 Score = 106 bits (267),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 27/66 (41%), Positives = 42/66 (64%), Gaps = 0/66 (0%)

Query  372  RNAMQRAMQSDVSVFRTQESLDEGVQKITAIDKMFDQVGTKDRSMIWNSDLVETLELRNL  431
            R  +Q+ MQ +V VFRT+E L E ++KI  + + +  V   D+S ++N++L+E LEL NL
Sbjct  1    RRELQKTMQDNVGVFRTEEGLKEALEKIQELRERYKNVRVTDKSKVFNTELIEALELANL  60

Query  432  LTCAYV  437
            L  A  
Sbjct  61   LELAEA  66



Lambda      K        H        a         alpha
   0.320    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00026827

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  459     1e-159


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 459 bits (1183),  Expect = 1e-159, Method: Composition-based stats.
 Identities = 198/465 (43%), Positives = 307/465 (66%), Gaps = 15/465 (3%)

Query  2    LKDMSVMHPAARMLVDLSAAQDVEAGDGTTSVVVIAGSLLGAAERLLGKGIHPTIISESF  61
            LK++ + HPAA++LV+ + AQD E GDGTT+VVV+AG LL  AE+LL  G+HPT I E +
Sbjct  35   LKELEIQHPAAKLLVEAAKAQDEEVGDGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGY  94

Query  62   QRAAAAAVEILQNM-SRPINLMDRATLLQAASTSLSSKIVSQHSGLLGPMAVDSVLKVIN  120
            ++A   A+EIL ++ S P+  +DR  LL+ A TSLSSKI+S+ S  L  + VD+VL +  
Sbjct  95   EKALEKALEILDSIISIPVEDVDREDLLKVARTSLSSKIISRESDFLAKLVVDAVLAI--  152

Query  121  PKTAENVDLRNIRIVKKVGGTIEDSEMVDGLVLNQPVIKSSGGPTRIEKARIGLIQFQLS  180
            PK   + DL NI +VK +GG++EDSE+VDG+VL++        P R+E A++ L+   L 
Sbjct  153  PKNDGSFDLGNIGVVKILGGSLEDSELVDGVVLDK-GPLHPDMPKRLENAKVLLLNCSLE  211

Query  181  PPKPDMENQIVVNDYRQMDKILKEERQYLLNMVKKIQKTKCNVLLIQKSILRDAVNDLSL  240
              K + +  +V++D  Q+++ LK E + +L +V+KI  +  NV++ QK I     +DL+L
Sbjct  212  YEKTETKATVVLSDAEQLERFLKAEEEQILEIVEKIIDSGVNVVVCQKGI-----DDLAL  266

Query  241  HFLSRLKILAIKDIERDEVEFLCKSLGCKPVANIDSFTEDKLGTADLVEEVQASGARYVK  300
            HFL++  I+A++ +++ ++E L K+ G + V+++D  T D LGTA  VEE +    +Y  
Sbjct  267  HFLAKNGIMALRRVKKRDLERLAKATGARAVSSLDDLTPDDLGTAGKVEEEKIGDEKYTF  326

Query  301  ITGIKTPATAANQTVSIVARGANNLILDEAERSLHDALCVIRCLVKKRALIAGGGAPEIE  360
            I G K+P  A     +I+ RGA + +LDE ERS+HDALCV++  ++   ++ GGGA E+E
Sbjct  327  IEGCKSPKAA-----TILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEME  381

Query  361  VAHSLAMRARELAGTEAICWKAFADAMEVIPTTLAENAGLNSIKVVTELRHRHAQGQHNA  420
            +A +L   A+ ++G E +  +AFA+A+EVIP TLAENAGL+ I+V+ ELR  HA G+ +A
Sbjct  382  LARALREYAKSVSGKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHA  441

Query  421  GVSIRSGGVRDDITEENILQPLLVSTSAIELAAETVKMIMRIDDI  465
            G+ + +G +  D+ E  ++ PL V   A++ A E    I+RIDDI
Sbjct  442  GIDVETGEII-DMKEAGVVDPLKVKRQALKSATEAASTILRIDDI  485



Lambda      K        H        a         alpha
   0.317    0.132    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581273816


Query= TCONS_00021906

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  516     0.0  


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 516 bits (1331),  Expect = 0.0, Method: Composition-based stats.
 Identities = 217/499 (43%), Positives = 333/499 (67%), Gaps = 15/499 (3%)

Query  34   VADAIRTSLGPRGMDKMIQTPKGNTIITNDGNTMLKDMSVMHPAARMLVDLSAAQDVEAG  93
            +AD +RTSLGP+GMDKM+    G+  +TNDG T+LK++ + HPAA++LV+ + AQD E G
Sbjct  1    LADIVRTSLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVG  60

Query  94   DGTTSVVVIAGSLLGAAERLLGKGIHPTIISESFQRAAAAAVEILQNM-SRPINLMDRAT  152
            DGTT+VVV+AG LL  AE+LL  G+HPT I E +++A   A+EIL ++ S P+  +DR  
Sbjct  61   DGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSIISIPVEDVDRED  120

Query  153  LLQAASTSLSSKIVSQHSGLLGPMAVDSVLKVINPKTAENVDLRNIRIVKKVGGTIEDSE  212
            LL+ A TSLSSKI+S+ S  L  + VD+VL +  PK   + DL NI +VK +GG++EDSE
Sbjct  121  LLKVARTSLSSKIISRESDFLAKLVVDAVLAI--PKNDGSFDLGNIGVVKILGGSLEDSE  178

Query  213  MVDGLVLNQPVIKSSGGPTRIEKARIGLIQFQLSPPKPDMENQIVVNDYRQMDKILKEER  272
            +VDG+VL++        P R+E A++ L+   L   K + +  +V++D  Q+++ LK E 
Sbjct  179  LVDGVVLDK-GPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKAEE  237

Query  273  QYLLNMVKKIQKTKCNVLLIQKSILRDAVNDLSLHFLSRLKILAIKDIERDEVEFLCKSL  332
            + +L +V+KI  +  NV++ QK I     +DL+LHFL++  I+A++ +++ ++E L K+ 
Sbjct  238  EQILEIVEKIIDSGVNVVVCQKGI-----DDLALHFLAKNGIMALRRVKKRDLERLAKAT  292

Query  333  GCKPVANIDSFTEDKLGTADLVEEVQASGARYVKITGIKTPATAANQTVSIVARGANNLI  392
            G + V+++D  T D LGTA  VEE +    +Y  I G K+P  A     +I+ RGA + +
Sbjct  293  GARAVSSLDDLTPDDLGTAGKVEEEKIGDEKYTFIEGCKSPKAA-----TILLRGATDHV  347

Query  393  LDEAERSLHDALCVIRCLVKKRALIAGGGAPEIEVAHSLAMRARELAGTEAICWKAFADA  452
            LDE ERS+HDALCV++  ++   ++ GGGA E+E+A +L   A+ ++G E +  +AFA+A
Sbjct  348  LDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEA  407

Query  453  MEVIPTTLAENAGLNSIKVVTELRHRHAQGQHNAGVSIRSGGVRDDITEENILQPLLVST  512
            +EVIP TLAENAGL+ I+V+ ELR  HA G+ +AG+ + +G +  D+ E  ++ PL V  
Sbjct  408  LEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEII-DMKEAGVVDPLKVKR  466

Query  513  SAIELAAETVKMIMRIDDI  531
             A++ A E    I+RIDDI
Sbjct  467  QALKSATEAASTILRIDDI  485



Lambda      K        H        a         alpha
   0.317    0.131    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0771    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00021907

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  247     9e-80


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 247 bits (632),  Expect = 9e-80, Method: Composition-based stats.
 Identities = 105/220 (48%), Positives = 151/220 (69%), Gaps = 4/220 (2%)

Query  34   VADAIRTSLGPRGMDKMIQTPKGNTIITNDGNTMLKDMSVMHPAARMLVDLSAAQDVEAG  93
            +AD +RTSLGP+GMDKM+    G+  +TNDG T+LK++ + HPAA++LV+ + AQD E G
Sbjct  1    LADIVRTSLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVG  60

Query  94   DGTTSVVVIAGSLLGAAERLLGKGIHPTIISESFQRAAAAAVEILQNM-SRPINLMDRAT  152
            DGTT+VVV+AG LL  AE+LL  G+HPT I E +++A   A+EIL ++ S P+  +DR  
Sbjct  61   DGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSIISIPVEDVDRED  120

Query  153  LLQAASTSLSSKIVSQHSGLLGPMAVDSVLKVINPKTAENVDLRNIRIVKKVGGTIEDSE  212
            LL+ A TSLSSKI+S+ S  L  + VD+VL +  PK   + DL NI +VK +GG++EDSE
Sbjct  121  LLKVARTSLSSKIISRESDFLAKLVVDAVLAI--PKNDGSFDLGNIGVVKILGGSLEDSE  178

Query  213  MVDGLVLNQPVIKSSGGPTRIEKARIGLIQFQLSPPKPDV  252
            +VDG+VL++        P R+E A++ L+   L   K + 
Sbjct  179  LVDGVVLDK-GPLHPDMPKRLENAKVLLLNCSLEYEKTET  217



Lambda      K        H        a         alpha
   0.315    0.130    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00026828

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  484     3e-168


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 484 bits (1247),  Expect = 3e-168, Method: Composition-based stats.
 Identities = 208/499 (42%), Positives = 325/499 (65%), Gaps = 15/499 (3%)

Query  34   IYNAIRTVRNPRGMDKMVWPPKGNTIIVRIRNTMLKDMSVMHPAARMLVDLSAAQDVEAG  93
            + + +RT   P+GMDKM+    G+  +     T+LK++ + HPAA++LV+ + AQD E G
Sbjct  1    LADIVRTSLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVG  60

Query  94   DGTTSVVVIAGSLLGAAERLLGKGIHPTIISESFQRAAAAAVEILQNM-SRPINLMDRAT  152
            DGTT+VVV+AG LL  AE+LL  G+HPT I E +++A   A+EIL ++ S P+  +DR  
Sbjct  61   DGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSIISIPVEDVDRED  120

Query  153  LLQAASTSLSSKIVSQHSGLLGPMAVDSVLKVINPKTAENVDLRNIRIVKKVGGTIEDSE  212
            LL+ A TSLSSKI+S+ S  L  + VD+VL +  PK   + DL NI +VK +GG++EDSE
Sbjct  121  LLKVARTSLSSKIISRESDFLAKLVVDAVLAI--PKNDGSFDLGNIGVVKILGGSLEDSE  178

Query  213  MVDGLVLNQPVIKSSGGPTRIEKARIGLIQFQLSPPKPDMENQIVVNDYRQMDKILKEER  272
            +VDG+VL++        P R+E A++ L+   L   K + +  +V++D  Q+++ LK E 
Sbjct  179  LVDGVVLDK-GPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKAEE  237

Query  273  QYLLNMVKKIQKTKCNVLLIQKSILRDAVNDLSLHFLSRLKILAIKDIERDEVEFLCKSL  332
            + +L +V+KI  +  NV++ QK I     +DL+LHFL++  I+A++ +++ ++E L K+ 
Sbjct  238  EQILEIVEKIIDSGVNVVVCQKGI-----DDLALHFLAKNGIMALRRVKKRDLERLAKAT  292

Query  333  GCKPVANIDSFTEDKLGTADLVEEVQASGARYVKITGIKTPATAANQTVSIVARGANNLI  392
            G + V+++D  T D LGTA  VEE +    +Y  I G K+P  A     +I+ RGA + +
Sbjct  293  GARAVSSLDDLTPDDLGTAGKVEEEKIGDEKYTFIEGCKSPKAA-----TILLRGATDHV  347

Query  393  LDEAERSLHDALCVIRCLVKKRALIAGGGAPEIEVAHSLAMRARELAGTEAICWKAFADA  452
            LDE ERS+HDALCV++  ++   ++ GGGA E+E+A +L   A+ ++G E +  +AFA+A
Sbjct  348  LDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEA  407

Query  453  MEVIPTTLAENAGLNSIKVVTELRHRHAQGQHNAGVSIRSGGVRDDITEENILQPLLVST  512
            +EVIP TLAENAGL+ I+V+ ELR  HA G+ +AG+ + +G +  D+ E  ++ PL V  
Sbjct  408  LEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEII-DMKEAGVVDPLKVKR  466

Query  513  SAIELAAETVKMIMRIDDI  531
             A++ A E    I+RIDDI
Sbjct  467  QALKSATEAASTILRIDDI  485



Lambda      K        H        a         alpha
   0.318    0.132    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00021908

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  500     8e-175


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 500 bits (1290),  Expect = 8e-175, Method: Composition-based stats.
 Identities = 212/499 (42%), Positives = 329/499 (66%), Gaps = 15/499 (3%)

Query  34   ISDAIRTVRGPRGMDKMVWTPKGNTIIVRDGNTMLKDMSVMHPAARMLVDLSAAQDVEAG  93
            ++D +RT  GP+GMDKM+    G+  +  DG T+LK++ + HPAA++LV+ + AQD E G
Sbjct  1    LADIVRTSLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVG  60

Query  94   DGTTSVVVIAGSLLGAAERLLGKGIHPTIISESFQRAAAAAVEILQNM-SRPINLMDRAT  152
            DGTT+VVV+AG LL  AE+LL  G+HPT I E +++A   A+EIL ++ S P+  +DR  
Sbjct  61   DGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSIISIPVEDVDRED  120

Query  153  LLQAASTSLSSKIVSQHSGLLGPMAVDSVLKVINPKTAENVDLRNIRIVKKVGGTIEDSE  212
            LL+ A TSLSSKI+S+ S  L  + VD+VL +  PK   + DL NI +VK +GG++EDSE
Sbjct  121  LLKVARTSLSSKIISRESDFLAKLVVDAVLAI--PKNDGSFDLGNIGVVKILGGSLEDSE  178

Query  213  MVDGLVLNQPVIKSSGGPTRIEKARIGLIQFQLSPPKPDMENQIVVNDYRQMDKILKEER  272
            +VDG+VL++        P R+E A++ L+   L   K + +  +V++D  Q+++ LK E 
Sbjct  179  LVDGVVLDK-GPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKAEE  237

Query  273  QYLLNMVKKIQKTKCNVLLIQKSILRDAVNDLSLHFLSRLKILAIKDIERDEVEFLCKSL  332
            + +L +V+KI  +  NV++ QK I     +DL+LHFL++  I+A++ +++ ++E L K+ 
Sbjct  238  EQILEIVEKIIDSGVNVVVCQKGI-----DDLALHFLAKNGIMALRRVKKRDLERLAKAT  292

Query  333  GCKPVANIDSFTEDKLGTADLVEEVQASGARYVKITGIKTPATAANQTVSIVARGANNLI  392
            G + V+++D  T D LGTA  VEE +    +Y  I G K+P  A     +I+ RGA + +
Sbjct  293  GARAVSSLDDLTPDDLGTAGKVEEEKIGDEKYTFIEGCKSPKAA-----TILLRGATDHV  347

Query  393  LDEAERSLHDALCVIRCLVKKRALIAGGGAPEIEVAHSLAMRARELAGTEAICWKAFADA  452
            LDE ERS+HDALCV++  ++   ++ GGGA E+E+A +L   A+ ++G E +  +AFA+A
Sbjct  348  LDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEA  407

Query  453  MEVIPTTLAENAGLNSIKVVTELRHRHAQGQHNAGVSIRSGGVRDDITEENILQPLLVST  512
            +EVIP TLAENAGL+ I+V+ ELR  HA G+ +AG+ + +G +  D+ E  ++ PL V  
Sbjct  408  LEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEII-DMKEAGVVDPLKVKR  466

Query  513  SAIELAAETVKMIMRIDDI  531
             A++ A E    I+RIDDI
Sbjct  467  QALKSATEAASTILRIDDI  485



Lambda      K        H        a         alpha
   0.317    0.132    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00021909

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  477     1e-165


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 477 bits (1229),  Expect = 1e-165, Method: Composition-based stats.
 Identities = 208/501 (42%), Positives = 326/501 (65%), Gaps = 19/501 (4%)

Query  34   IYNAIRTVRNL--RGMDKMVWPRKGNTIIVRIPNTMLKDMSVMHPAARMLVDLSAAQDVE  91
            + + +RT  +L  +GMDKM+    G+  +     T+LK++ + HPAA++LV+ + AQD E
Sbjct  1    LADIVRT--SLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEE  58

Query  92   AGDGTTSVVVIAGSLLGAAERLLGKGIHPTIISESFQRAAAAAVEILQNM-SRPINLMDR  150
             GDGTT+VVV+AG LL  AE+LL  G+HPT I E +++A   A+EIL ++ S P+  +DR
Sbjct  59   VGDGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSIISIPVEDVDR  118

Query  151  ATLLQAASTSLSSKIVSQHSGLLGPMAVDSVLKVINPKTAENVDLRNIRIVKKVGGTIED  210
              LL+ A TSLSSKI+S+ S  L  + VD+VL +  PK   + DL NI +VK +GG++ED
Sbjct  119  EDLLKVARTSLSSKIISRESDFLAKLVVDAVLAI--PKNDGSFDLGNIGVVKILGGSLED  176

Query  211  SEMVDGLVLNQPVIKSSGGPTRIEKARIGLIQFQLSPPKPDMENQIVVNDYRQMDKILKE  270
            SE+VDG+VL++        P R+E A++ L+   L   K + +  +V++D  Q+++ LK 
Sbjct  177  SELVDGVVLDK-GPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKA  235

Query  271  ERQYLLNMVKKIQKTKCNVLLIQKSILRDAVNDLSLHFLSRLKILAIKDIERDEVEFLCK  330
            E + +L +V+KI  +  NV++ QK I     +DL+LHFL++  I+A++ +++ ++E L K
Sbjct  236  EEEQILEIVEKIIDSGVNVVVCQKGI-----DDLALHFLAKNGIMALRRVKKRDLERLAK  290

Query  331  SLGCKPVANIDSFTEDKLGTADLVEEVQASGARYVKITGIKTPATAANQTVSIVARGANN  390
            + G + V+++D  T D LGTA  VEE +    +Y  I G K+P  A     +I+ RGA +
Sbjct  291  ATGARAVSSLDDLTPDDLGTAGKVEEEKIGDEKYTFIEGCKSPKAA-----TILLRGATD  345

Query  391  LILDEAERSLHDALCVIRCLVKKRALIAGGGAPEIEVAHSLAMRARELAGTEAICWKAFA  450
             +LDE ERS+HDALCV++  ++   ++ GGGA E+E+A +L   A+ ++G E +  +AFA
Sbjct  346  HVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFA  405

Query  451  DAMEVIPTTLAENAGLNSIKVVTELRHRHAQGQHNAGVSIRSGGVRDDITEENILQPLLV  510
            +A+EVIP TLAENAGL+ I+V+ ELR  HA G+ +AG+ + +G +  D+ E  ++ PL V
Sbjct  406  EALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEII-DMKEAGVVDPLKV  464

Query  511  STSAIELAAETVKMIMRIDDI  531
               A++ A E    I+RIDDI
Sbjct  465  KRQALKSATEAASTILRIDDI  485



Lambda      K        H        a         alpha
   0.318    0.132    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00021910

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  494     5e-173


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 494 bits (1273),  Expect = 5e-173, Method: Composition-based stats.
 Identities = 207/485 (43%), Positives = 320/485 (66%), Gaps = 15/485 (3%)

Query  5    SLGPRGMDKMIQTPKGNTIITNDGNTMLKDMSVMHPAARMLVDLSAAQDVEAGDGTTSVV  64
            SLGP+GMDKM+    G+  +TNDG T+LK++ + HPAA++LV+ + AQD E GDGTT+VV
Sbjct  8    SLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVGDGTTTVV  67

Query  65   VIAGSLLGAAERLLGKGIHPTIISESFQRAAAAAVEILQNM-SRPINLMDRATLLQAAST  123
            V+AG LL  AE+LL  G+HPT I E +++A   A+EIL ++ S P+  +DR  LL+ A T
Sbjct  68   VLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSIISIPVEDVDREDLLKVART  127

Query  124  SLSSKIVSQHSGLLGPMAVDSVLKVINPKTAENVDLRNIRIVKKVGGTIEDSEMVDGLVL  183
            SLSSKI+S+ S  L  + VD+VL +  PK   + DL NI +VK +GG++EDSE+VDG+VL
Sbjct  128  SLSSKIISRESDFLAKLVVDAVLAI--PKNDGSFDLGNIGVVKILGGSLEDSELVDGVVL  185

Query  184  NQPVIKSSGGPTRIEKARIGLIQFQLSPPKPDMENQIVVNDYRQMDKILKEERQYLLNMV  243
            ++        P R+E A++ L+   L   K + +  +V++D  Q+++ LK E + +L +V
Sbjct  186  DK-GPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKAEEEQILEIV  244

Query  244  KKIQKTKCNVLLIQKSILRDAVNDLSLHFLSRLKILAIKDIERDEVEFLCKSLGCKPVAN  303
            +KI  +  NV++ QK I     +DL+LHFL++  I+A++ +++ ++E L K+ G + V++
Sbjct  245  EKIIDSGVNVVVCQKGI-----DDLALHFLAKNGIMALRRVKKRDLERLAKATGARAVSS  299

Query  304  IDSFTEDKLGTADLVEEVQASGARYVKITGIKTPATAANQTVSIVARGANNLILDEAERS  363
            +D  T D LGTA  VEE +    +Y  I G K+P  A     +I+ RGA + +LDE ERS
Sbjct  300  LDDLTPDDLGTAGKVEEEKIGDEKYTFIEGCKSPKAA-----TILLRGATDHVLDEIERS  354

Query  364  LHDALCVIRCLVKKRALIAGGGAPEIEVAHSLAMRARELAGTEAICWKAFADAMEVIPTT  423
            +HDALCV++  ++   ++ GGGA E+E+A +L   A+ ++G E +  +AFA+A+EVIP T
Sbjct  355  IHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEALEVIPKT  414

Query  424  LAENAGLNSIKVVTELRHRHAQGQHNAGVSIRSGGVRDDITEENILQPLLVSTSAIELAA  483
            LAENAGL+ I+V+ ELR  HA G+ +AG+ + +G +  D+ E  ++ PL V   A++ A 
Sbjct  415  LAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEII-DMKEAGVVDPLKVKRQALKSAT  473

Query  484  ETVKM  488
            E    
Sbjct  474  EAAST  478



Lambda      K        H        a         alpha
   0.317    0.132    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 601084202


Query= TCONS_00021911

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  514     1e-180


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 514 bits (1326),  Expect = 1e-180, Method: Composition-based stats.
 Identities = 217/499 (43%), Positives = 333/499 (67%), Gaps = 15/499 (3%)

Query  14   VADAIRTSLGPRGMDKMIQTPKGNTIITNDGNTMLKDMSVMHPAARMLVDLSAAQDVEAG  73
            +AD +RTSLGP+GMDKM+    G+  +TNDG T+LK++ + HPAA++LV+ + AQD E G
Sbjct  1    LADIVRTSLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVG  60

Query  74   DGTTSVVVIAGSLLGAAERLLGKGIHPTIISESFQRAAAAAVEILQNM-SRPINLMDRAT  132
            DGTT+VVV+AG LL  AE+LL  G+HPT I E +++A   A+EIL ++ S P+  +DR  
Sbjct  61   DGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSIISIPVEDVDRED  120

Query  133  LLQAASTSLSSKIVSQHSGLLGPMAVDSVLKVINPKTAENVDLRNIRIVKKVGGTIEDSE  192
            LL+ A TSLSSKI+S+ S  L  + VD+VL +  PK   + DL NI +VK +GG++EDSE
Sbjct  121  LLKVARTSLSSKIISRESDFLAKLVVDAVLAI--PKNDGSFDLGNIGVVKILGGSLEDSE  178

Query  193  MVDGLVLNQPVIKSSGGPTRIEKARIGLIQFQLSPPKPDMENQIVVNDYRQMDKILKEER  252
            +VDG+VL++        P R+E A++ L+   L   K + +  +V++D  Q+++ LK E 
Sbjct  179  LVDGVVLDK-GPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKAEE  237

Query  253  QYLLNMVKKIQKTKCNVLLIQKSILRDAVNDLSLHFLSRLKILAIKDIERDEVEFLCKSL  312
            + +L +V+KI  +  NV++ QK I     +DL+LHFL++  I+A++ +++ ++E L K+ 
Sbjct  238  EQILEIVEKIIDSGVNVVVCQKGI-----DDLALHFLAKNGIMALRRVKKRDLERLAKAT  292

Query  313  GCKPVANIDSFTEDKLGTADLVEEVQASGARYVKITGIKTPATAANQTVSIVARGANNLI  372
            G + V+++D  T D LGTA  VEE +    +Y  I G K+P  A     +I+ RGA + +
Sbjct  293  GARAVSSLDDLTPDDLGTAGKVEEEKIGDEKYTFIEGCKSPKAA-----TILLRGATDHV  347

Query  373  LDEAERSLHDALCVIRCLVKKRALIAGGGAPEIEVAHSLAMRARELAGTEAICWKAFADA  432
            LDE ERS+HDALCV++  ++   ++ GGGA E+E+A +L   A+ ++G E +  +AFA+A
Sbjct  348  LDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEA  407

Query  433  MEVIPTTLAENAGLNSIKVVTELRHRHAQGQHNAGVSIRSGGVRDDITEENILQPLLVST  492
            +EVIP TLAENAGL+ I+V+ ELR  HA G+ +AG+ + +G +  D+ E  ++ PL V  
Sbjct  408  LEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEII-DMKEAGVVDPLKVKR  466

Query  493  SAIELAAETVKMIMRIDDI  511
             A++ A E    I+RIDDI
Sbjct  467  QALKSATEAASTILRIDDI  485



Lambda      K        H        a         alpha
   0.317    0.132    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00021912

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  275     1e-90


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 275 bits (706),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 112/277 (40%), Positives = 181/277 (65%), Gaps = 11/277 (4%)

Query  4    QIVVNDYRQMDKILKEERQYLLNMVKKIQKTKCNVLLIQKSILRDAVNDLSLHFLSRLKI  63
             +V++D  Q+++ LK E + +L +V+KI  +  NV++ QK I     +DL+LHFL++  I
Sbjct  220  TVVLSDAEQLERFLKAEEEQILEIVEKIIDSGVNVVVCQKGI-----DDLALHFLAKNGI  274

Query  64   LAIKDIERDEVEFLCKSLGCKPVANIDSFTEDKLGTADLVEEVQASGARYVKITGIKTPA  123
            +A++ +++ ++E L K+ G + V+++D  T D LGTA  VEE +    +Y  I G K+P 
Sbjct  275  MALRRVKKRDLERLAKATGARAVSSLDDLTPDDLGTAGKVEEEKIGDEKYTFIEGCKSPK  334

Query  124  TAANQTVSIVARGANNLILDEAERSLHDALCVIRCLVKKRALIAGGGAPEIEVAHSLAMR  183
             A     +I+ RGA + +LDE ERS+HDALCV++  ++   ++ GGGA E+E+A +L   
Sbjct  335  AA-----TILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREY  389

Query  184  ARELAGTEAICWKAFADAMEVIPTTLAENAGLNSIKVVTELRHRHAQGQHNAGVSIRSGG  243
            A+ ++G E +  +AFA+A+EVIP TLAENAGL+ I+V+ ELR  HA G+ +AG+ + +G 
Sbjct  390  AKSVSGKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGE  449

Query  244  VRDDITEENILQPLLVSTSAIELAAETVKMIMRIDDI  280
            +  D+ E  ++ PL V   A++ A E    I+RIDDI
Sbjct  450  II-DMKEAGVVDPLKVKRQALKSATEAASTILRIDDI  485



Lambda      K        H        a         alpha
   0.319    0.133    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00026829

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  455     2e-158


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 455 bits (1174),  Expect = 2e-158, Method: Composition-based stats.
 Identities = 196/462 (42%), Positives = 304/462 (66%), Gaps = 15/462 (3%)

Query  1    MSVMHPAARMLVDLSAAQDVEAGDGTTSVVVIAGSLLGAAERLLGKGIHPTIISESFQRA  60
            + + HPAA++LV+ + AQD E GDGTT+VVV+AG LL  AE+LL  G+HPT I E +++A
Sbjct  38   LEIQHPAAKLLVEAAKAQDEEVGDGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKA  97

Query  61   AAAAVEILQNM-SRPINLMDRATLLQAASTSLSSKIVSQHSGLLGPMAVDSVLKVINPKT  119
               A+EIL ++ S P+  +DR  LL+ A TSLSSKI+S+ S  L  + VD+VL +  PK 
Sbjct  98   LEKALEILDSIISIPVEDVDREDLLKVARTSLSSKIISRESDFLAKLVVDAVLAI--PKN  155

Query  120  AENVDLRNIRIVKKVGGTIEDSEMVDGLVLNQPVIKSSGGPTRIEKARIGLIQFQLSPPK  179
              + DL NI +VK +GG++EDSE+VDG+VL++        P R+E A++ L+   L   K
Sbjct  156  DGSFDLGNIGVVKILGGSLEDSELVDGVVLDK-GPLHPDMPKRLENAKVLLLNCSLEYEK  214

Query  180  PDMENQIVVNDYRQMDKILKEERQYLLNMVKKIQKTKCNVLLIQKSILRDAVNDLSLHFL  239
             + +  +V++D  Q+++ LK E + +L +V+KI  +  NV++ QK I     +DL+LHFL
Sbjct  215  TETKATVVLSDAEQLERFLKAEEEQILEIVEKIIDSGVNVVVCQKGI-----DDLALHFL  269

Query  240  SRLKILAIKDIERDEVEFLCKSLGCKPVANIDSFTEDKLGTADLVEEVQASGARYVKITG  299
            ++  I+A++ +++ ++E L K+ G + V+++D  T D LGTA  VEE +    +Y  I G
Sbjct  270  AKNGIMALRRVKKRDLERLAKATGARAVSSLDDLTPDDLGTAGKVEEEKIGDEKYTFIEG  329

Query  300  IKTPATAANQTVSIVARGANNLILDEAERSLHDALCVIRCLVKKRALIAGGGAPEIEVAH  359
             K+P  A     +I+ RGA + +LDE ERS+HDALCV++  ++   ++ GGGA E+E+A 
Sbjct  330  CKSPKAA-----TILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELAR  384

Query  360  SLAMRARELAGTEAICWKAFADAMEVIPTTLAENAGLNSIKVVTELRHRHAQGQHNAGVS  419
            +L   A+ ++G E +  +AFA+A+EVIP TLAENAGL+ I+V+ ELR  HA G+ +AG+ 
Sbjct  385  ALREYAKSVSGKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGID  444

Query  420  IRSGGVRDDITEENILQPLLVSTSAIELAAETVKMIMRIDDI  461
            + +G +  D+ E  ++ PL V   A++ A E    I+RIDDI
Sbjct  445  VETGEII-DMKEAGVVDPLKVKRQALKSATEAASTILRIDDI  485



Lambda      K        H        a         alpha
   0.317    0.132    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 569004184


Query= TCONS_00021913

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00021914

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00021917

Length=1329


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1694594600


Query= TCONS_00021915

Length=947
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395744 pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N...  413     2e-137
CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family      207     8e-62 


>CDD:395744 pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal 
region.  This family is an alignment of the region to the 
N-terminal side of the active site. The Prosite motif does 
not correspond to this Pfam entry.
Length=352

 Score = 413 bits (1063),  Expect = 2e-137, Method: Composition-based stats.
 Identities = 156/376 (41%), Positives = 208/376 (55%), Gaps = 25/376 (7%)

Query  230  SPDLKKVLLISEQQKNWRHSFTGKYWVLDVDSQTAQPLDPSAPDGRVQLALWSPASDAVV  289
            SPD K +LL +   KNWRHS+T  Y++ D+++   +PL P   +G++Q A WSP  D + 
Sbjct  1    SPDGKYLLLATNYTKNWRHSYTADYYIYDLETNRVEPLPP--GEGKIQDAKWSPDGDRLA  58

Query  290  FVRDNNLYLRRLSSDSVVAITKDGGENLFYGVPDWVYEEEVISGNSVTWWSNDAKYIAFF  349
            FVRDNNLY+R L++   + IT DG + +F GV DWVYEEEV+  NS  WWS D   +AF 
Sbjct  59   FVRDNNLYVRELATGKEIQITSDGSDGIFNGVADWVYEEEVLGSNSAVWWSPDGSRLAFL  118

Query  350  RTNETSVPEFPVQYYISRPSGKKPLPGLENYPDVREIKYPKPGAPNPVVDLQFYDVEKNE  409
            R +E+ VP   + YY     G          P+VREIKYPK GAPNP V+L  YD+   +
Sbjct  119  RFDESEVPIITLPYYTDEGPG----------PEVREIKYPKAGAPNPTVELFVYDLASGK  168

Query  410  VFSVQVADDFADDDRIIIEVLWASEGKILVRSTNRESDILKVYLIDTQSRTGKLVRSEDV  469
               V   DD +D D  I  V W  +GK+LV+  NR+ + LKV L D ++    ++  E  
Sbjct  169  TVEVVPPDDLSDADYYITRVKWVPDGKLLVQWLNRDQNRLKVVLCDAETGRTVVILEET-  227

Query  470  AGLDGGWVEPSQSTRFVPADPNNGRPHDGYIDTVPYNGYDHLAYFSPLDNPNALMLTSGE  529
                 GWVE  Q   F+       R   G++     +GY+HL  +  LD  + + LTSG 
Sbjct  228  ---SDGWVELHQDPHFIK------RDGSGFLWISERDGYNHLYLY-DLDGKSPIQLTSGN  277

Query  530  WEVVDAPAAVDLQRGLVYFVGTKEAPTQRHVYRVQLD-GSNLNPLTDTSKPGYYDVSFSH  588
            WEV      VD  R LVYF  T+++PT+RH+Y V LD G     LTD S    Y  SFS 
Sbjct  278  WEVTS-ILGVDETRDLVYFTATEDSPTERHLYSVSLDSGGEPTCLTDDSGDHDYSASFSP  336

Query  589  GTGYALLTYKGPSIPW  604
               Y +LTY GP  P 
Sbjct  337  NGSYYVLTYSGPDTPP  352


>CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.  
Length=213

 Score = 207 bits (528),  Expect = 8e-62, Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 93/204 (46%), Gaps = 9/204 (4%)

Query  686  FTVDFQSYVASSLGYIVVTVDGRGTGFIGRKARCIVRGNLGFYEAHDQIATAKMWAAKSY  745
             +  + + + +  GY+V   +GRG+G  G       +G+LG  E  D IA A+    + Y
Sbjct  1    PSFSWNAQLLADRGYVVAIANGRGSGGYGEAFHDAGKGDLGQNEFDDFIAAAEYLIEQGY  60

Query  746  VDETRMAIWGWSFGGFMTLKTLEQDAGRTFQYGMAVAPVTDWRFYDSI----YTERYMH-  800
             D  R+AIWG S+GG++T   L Q     F+  +A  PV DW  Y S     +TERYM  
Sbjct  61   TDPDRLAIWGGSYGGYLTGAALNQ-RPDLFKAAVAHVPVVDWLAYMSDTSLPFTERYMEW  119

Query  801  -TPQHNPNGYD-NSTITDMAALSESVRFLVMHGASDDNVHLQNTLVLIDKLDLSNVENYD  858
              P  N  GYD  S  +    +      L++HG  DD V    +L L+  L    V  + 
Sbjct  120  GNPWDNEEGYDYLSPYSPADNVKVYPPLLLIHGLLDDRVPPWQSLKLVAALQRKGV-PFL  178

Query  859  VQFYPDSDHSIYFHNAHMMVYHRM  882
            +  +PD  H I      +  Y R 
Sbjct  179  LLIFPDEGHGIGKPRNKVEEYARE  202



Lambda      K        H        a         alpha
   0.317    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1204910476


Query= TCONS_00021916

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395744 pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N...  410     3e-138
CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family      133     7e-36 


>CDD:395744 pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal 
region.  This family is an alignment of the region to the 
N-terminal side of the active site. The Prosite motif does 
not correspond to this Pfam entry.
Length=352

 Score = 410 bits (1057),  Expect = 3e-138, Method: Composition-based stats.
 Identities = 156/376 (41%), Positives = 208/376 (55%), Gaps = 25/376 (7%)

Query  230  SPDLKKVLLISEQQKNWRHSFTGKYWVLDVDSQTAQPLDPSAPDGRVQLALWSPASDAVV  289
            SPD K +LL +   KNWRHS+T  Y++ D+++   +PL P   +G++Q A WSP  D + 
Sbjct  1    SPDGKYLLLATNYTKNWRHSYTADYYIYDLETNRVEPLPP--GEGKIQDAKWSPDGDRLA  58

Query  290  FVRDNNLYLRRLSSDSVVAITKDGGENLFYGVPDWVYEEEVISGNSVTWWSNDAKYIAFF  349
            FVRDNNLY+R L++   + IT DG + +F GV DWVYEEEV+  NS  WWS D   +AF 
Sbjct  59   FVRDNNLYVRELATGKEIQITSDGSDGIFNGVADWVYEEEVLGSNSAVWWSPDGSRLAFL  118

Query  350  RTNETSVPEFPVQYYISRPSGKKPLPGLENYPDVREIKYPKPGAPNPVVDLQFYDVEKNE  409
            R +E+ VP   + YY     G          P+VREIKYPK GAPNP V+L  YD+   +
Sbjct  119  RFDESEVPIITLPYYTDEGPG----------PEVREIKYPKAGAPNPTVELFVYDLASGK  168

Query  410  VFSVQVADDFADDDRIIIEVLWASEGKILVRSTNRESDILKVYLIDTQSRTGKLVRSEDV  469
               V   DD +D D  I  V W  +GK+LV+  NR+ + LKV L D ++    ++  E  
Sbjct  169  TVEVVPPDDLSDADYYITRVKWVPDGKLLVQWLNRDQNRLKVVLCDAETGRTVVILEET-  227

Query  470  AGLDGGWVEPSQSTRFVPADPNNGRPHDGYIDTVPYNGYDHLAYFSPLDNPNALMLTSGE  529
                 GWVE  Q   F+       R   G++     +GY+HL  +  LD  + + LTSG 
Sbjct  228  ---SDGWVELHQDPHFIK------RDGSGFLWISERDGYNHLYLY-DLDGKSPIQLTSGN  277

Query  530  WEVVDAPAAVDLQRGLVYFVGTKEAPTQRHVYRVQLD-GSNLNPLTDTSKPGYYDVSFSH  588
            WEV      VD  R LVYF  T+++PT+RH+Y V LD G     LTD S    Y  SFS 
Sbjct  278  WEVTS-ILGVDETRDLVYFTATEDSPTERHLYSVSLDSGGEPTCLTDDSGDHDYSASFSP  336

Query  589  GTGYALLTYKGPSIPW  604
               Y +LTY GP  P 
Sbjct  337  NGSYYVLTYSGPDTPP  352


>CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.  
Length=213

 Score = 133 bits (336),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 39/113 (35%), Positives = 58/113 (51%), Gaps = 2/113 (2%)

Query  686  FTVDFQSYVASSLGYIVVTVDGRGTGFIGRKARCIVRGNLGFYEAHDQIATAKMWAAKSY  745
             +  + + + +  GY+V   +GRG+G  G       +G+LG  E  D IA A+    + Y
Sbjct  1    PSFSWNAQLLADRGYVVAIANGRGSGGYGEAFHDAGKGDLGQNEFDDFIAAAEYLIEQGY  60

Query  746  VDETRMAIWGWSFGGFMTLKTLEQDAGRTFQYGMAVAPVTDWRFYGMTSPSSP  798
             D  R+AIWG S+GG++T   L Q     F+  +A  PV DW  Y M+  S P
Sbjct  61   TDPDRLAIWGGSYGGYLTGAALNQ-RPDLFKAAVAHVPVVDWLAY-MSDTSLP  111



Lambda      K        H        a         alpha
   0.316    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1028792464


Query= TCONS_00021918

Length=1329


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1694594600


Query= TCONS_00021919

Length=806


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1036068224


Query= TCONS_00026831

Length=806


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1036068224


Query= TCONS_00021920

Length=801


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0832    0.140     1.90     42.6     43.6 

Effective search space used: 1028792464


Query= TCONS_00026832

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00021921

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460963 pfam03537, Glyco_hydro_114, Glycoside-hydrolase family...  334     7e-117


>CDD:460963 pfam03537, Glyco_hydro_114, Glycoside-hydrolase family GH114. 
 This family is recognized as a glycosyl-hydrolase family, 
number 114. It is endo-alpha-1,4-polygalactosaminidase, a rare 
enzyme. It is proposed to be TIM-barrel, the most common 
structure amongst the catalytic domains of glycosyl-hydrolases.
Length=218

 Score = 334 bits (858),  Expect = 7e-117, Method: Composition-based stats.
 Identities = 124/228 (54%), Positives = 155/228 (68%), Gaps = 11/228 (5%)

Query  83   WQIELLYALNDTSVDAEIYDIDLFINDKSTIAGLQRAGRKVICYFSAGSYENWRPDKDKF  142
            WQ +L  AL+      ++YDIDLF    +TIA L  AG+KVICYFSAGSYE+WRPD   F
Sbjct  1    WQYQLGGALDTPPDGVDVYDIDLFDTPAATIAALHAAGKKVICYFSAGSYEDWRPDAPDF  60

Query  143  KDSDLGHDLDDWPGEKWLNISSANVRQIMLDRLDMARDKGCDGVDPDNVDGYDNDNGLDL  202
              S LG DLD WPGE+WL+I S+ VR IM  R+D+A  KG DGV+PDNVDGY ND G  L
Sbjct  61   PASVLGKDLDGWPGERWLDIRSSAVRPIMKARIDLAAAKGFDGVEPDNVDGYQNDTGFLL  120

Query  203  TQADSISFVNFLANAAHARNMSIGLKNAGDIIPSVIKNMQWSVNEQCAQYNECDTYAVFP  262
            T AD +++  FLA  AHAR ++IGLKNAG++IP ++    ++VNEQCAQY+ECD Y  F 
Sbjct  121  TAADQLAYNRFLAALAHARGLAIGLKNAGELIPDLVDYFDFAVNEQCAQYDECDAYTPFI  180

Query  263  QNGKPVFHIEYPKGDKTNNDLSVTASQKNAAC-DFAGSANFSTVIKNM  309
              GKPVFHIEYP          V+A+   AAC   A +  FSTV+K++
Sbjct  181  AAGKPVFHIEYP----------VSAADDAAACAAAARALGFSTVVKDL  218



Lambda      K        H        a         alpha
   0.315    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00021923

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460963 pfam03537, Glyco_hydro_114, Glycoside-hydrolase family...  334     7e-117


>CDD:460963 pfam03537, Glyco_hydro_114, Glycoside-hydrolase family GH114. 
 This family is recognized as a glycosyl-hydrolase family, 
number 114. It is endo-alpha-1,4-polygalactosaminidase, a rare 
enzyme. It is proposed to be TIM-barrel, the most common 
structure amongst the catalytic domains of glycosyl-hydrolases.
Length=218

 Score = 334 bits (858),  Expect = 7e-117, Method: Composition-based stats.
 Identities = 124/228 (54%), Positives = 155/228 (68%), Gaps = 11/228 (5%)

Query  83   WQIELLYALNDTSVDAEIYDIDLFINDKSTIAGLQRAGRKVICYFSAGSYENWRPDKDKF  142
            WQ +L  AL+      ++YDIDLF    +TIA L  AG+KVICYFSAGSYE+WRPD   F
Sbjct  1    WQYQLGGALDTPPDGVDVYDIDLFDTPAATIAALHAAGKKVICYFSAGSYEDWRPDAPDF  60

Query  143  KDSDLGHDLDDWPGEKWLNISSANVRQIMLDRLDMARDKGCDGVDPDNVDGYDNDNGLDL  202
              S LG DLD WPGE+WL+I S+ VR IM  R+D+A  KG DGV+PDNVDGY ND G  L
Sbjct  61   PASVLGKDLDGWPGERWLDIRSSAVRPIMKARIDLAAAKGFDGVEPDNVDGYQNDTGFLL  120

Query  203  TQADSISFVNFLANAAHARNMSIGLKNAGDIIPSVIKNMQWSVNEQCAQYNECDTYAVFP  262
            T AD +++  FLA  AHAR ++IGLKNAG++IP ++    ++VNEQCAQY+ECD Y  F 
Sbjct  121  TAADQLAYNRFLAALAHARGLAIGLKNAGELIPDLVDYFDFAVNEQCAQYDECDAYTPFI  180

Query  263  QNGKPVFHIEYPKGDKTNNDLSVTASQKNAAC-DFAGSANFSTVIKNM  309
              GKPVFHIEYP          V+A+   AAC   A +  FSTV+K++
Sbjct  181  AAGKPVFHIEYP----------VSAADDAAACAAAARALGFSTVVKDL  218



Lambda      K        H        a         alpha
   0.315    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00021922

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460963 pfam03537, Glyco_hydro_114, Glycoside-hydrolase family...  334     7e-117


>CDD:460963 pfam03537, Glyco_hydro_114, Glycoside-hydrolase family GH114. 
 This family is recognized as a glycosyl-hydrolase family, 
number 114. It is endo-alpha-1,4-polygalactosaminidase, a rare 
enzyme. It is proposed to be TIM-barrel, the most common 
structure amongst the catalytic domains of glycosyl-hydrolases.
Length=218

 Score = 334 bits (858),  Expect = 7e-117, Method: Composition-based stats.
 Identities = 124/228 (54%), Positives = 155/228 (68%), Gaps = 11/228 (5%)

Query  83   WQIELLYALNDTSVDAEIYDIDLFINDKSTIAGLQRAGRKVICYFSAGSYENWRPDKDKF  142
            WQ +L  AL+      ++YDIDLF    +TIA L  AG+KVICYFSAGSYE+WRPD   F
Sbjct  1    WQYQLGGALDTPPDGVDVYDIDLFDTPAATIAALHAAGKKVICYFSAGSYEDWRPDAPDF  60

Query  143  KDSDLGHDLDDWPGEKWLNISSANVRQIMLDRLDMARDKGCDGVDPDNVDGYDNDNGLDL  202
              S LG DLD WPGE+WL+I S+ VR IM  R+D+A  KG DGV+PDNVDGY ND G  L
Sbjct  61   PASVLGKDLDGWPGERWLDIRSSAVRPIMKARIDLAAAKGFDGVEPDNVDGYQNDTGFLL  120

Query  203  TQADSISFVNFLANAAHARNMSIGLKNAGDIIPSVIKNMQWSVNEQCAQYNECDTYAVFP  262
            T AD +++  FLA  AHAR ++IGLKNAG++IP ++    ++VNEQCAQY+ECD Y  F 
Sbjct  121  TAADQLAYNRFLAALAHARGLAIGLKNAGELIPDLVDYFDFAVNEQCAQYDECDAYTPFI  180

Query  263  QNGKPVFHIEYPKGDKTNNDLSVTASQKNAAC-DFAGSANFSTVIKNM  309
              GKPVFHIEYP          V+A+   AAC   A +  FSTV+K++
Sbjct  181  AAGKPVFHIEYP----------VSAADDAAACAAAARALGFSTVVKDL  218



Lambda      K        H        a         alpha
   0.315    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00026833

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460963 pfam03537, Glyco_hydro_114, Glycoside-hydrolase family...  334     7e-117


>CDD:460963 pfam03537, Glyco_hydro_114, Glycoside-hydrolase family GH114. 
 This family is recognized as a glycosyl-hydrolase family, 
number 114. It is endo-alpha-1,4-polygalactosaminidase, a rare 
enzyme. It is proposed to be TIM-barrel, the most common 
structure amongst the catalytic domains of glycosyl-hydrolases.
Length=218

 Score = 334 bits (858),  Expect = 7e-117, Method: Composition-based stats.
 Identities = 124/228 (54%), Positives = 155/228 (68%), Gaps = 11/228 (5%)

Query  83   WQIELLYALNDTSVDAEIYDIDLFINDKSTIAGLQRAGRKVICYFSAGSYENWRPDKDKF  142
            WQ +L  AL+      ++YDIDLF    +TIA L  AG+KVICYFSAGSYE+WRPD   F
Sbjct  1    WQYQLGGALDTPPDGVDVYDIDLFDTPAATIAALHAAGKKVICYFSAGSYEDWRPDAPDF  60

Query  143  KDSDLGHDLDDWPGEKWLNISSANVRQIMLDRLDMARDKGCDGVDPDNVDGYDNDNGLDL  202
              S LG DLD WPGE+WL+I S+ VR IM  R+D+A  KG DGV+PDNVDGY ND G  L
Sbjct  61   PASVLGKDLDGWPGERWLDIRSSAVRPIMKARIDLAAAKGFDGVEPDNVDGYQNDTGFLL  120

Query  203  TQADSISFVNFLANAAHARNMSIGLKNAGDIIPSVIKNMQWSVNEQCAQYNECDTYAVFP  262
            T AD +++  FLA  AHAR ++IGLKNAG++IP ++    ++VNEQCAQY+ECD Y  F 
Sbjct  121  TAADQLAYNRFLAALAHARGLAIGLKNAGELIPDLVDYFDFAVNEQCAQYDECDAYTPFI  180

Query  263  QNGKPVFHIEYPKGDKTNNDLSVTASQKNAAC-DFAGSANFSTVIKNM  309
              GKPVFHIEYP          V+A+   AAC   A +  FSTV+K++
Sbjct  181  AAGKPVFHIEYP----------VSAADDAAACAAAARALGFSTVVKDL  218



Lambda      K        H        a         alpha
   0.315    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00021924

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  147     2e-42
CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase      144     2e-40


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 147 bits (374),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 80/311 (26%), Positives = 123/311 (40%), Gaps = 78/311 (25%)

Query  49   ILVTGGLGFIGSHTTLELLKANYNVIVIDNLSNSFQIVFDRIKLLASQYHERQGTKMPSL  108
            ILVTG  GFIGSH    LL+  Y VI +D L+++                     ++  L
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTA-----------------RLADL  43

Query  109  HLHAHDYRDTAALKELLEQHQTQTRWGTTKSKISGVIHFAAYKAVEESIRNPLKYYANNV  168
                 D  D  AL++LL   +              VIH AA   V  SI +P  +   NV
Sbjct  44   RFVEGDLTDRDALEKLLADVR-----------PDAVIHLAAVGGVGASIEDPEDFIEANV  92

Query  169  SGLIDFATTLGDYGIKTFIFSSSATVYGTLATSGLPLKEELCTHKEEIYTDHDGSERIVQ  228
             G ++        G+K F+F+SS+ VYG    + +P +E   T    +            
Sbjct  93   LGTLNLLEAARKAGVKRFLFASSSEVYG--DGAEIPQEET--TLTGPLAP----------  138

Query  229  PGCTGITNPYGRTK----WICEAILADLAASDPEWTIVALRYFNPIGCDESGLLGEDPRQ  284
                   +PY   K    W+  A      A+      V LR FN  G         D   
Sbjct  139  ------NSPYAAAKLAGEWLVLA-----YAAAYGLRAVILRLFNVYG-------PGDNEG  180

Query  285  TPTNLLPVVV-KVMTGEYRELQMFGTDWNTEDGTAVRDFIHVTDLARGHIAALSAANEGK  343
              + ++P ++ +++ G+   + ++G      DGT  RDF++V D+AR  + AL       
Sbjct  181  FVSRVIPALIRRILEGK--PILLWG------DGTQRRDFLYVDDVARAILLALE-----H  227

Query  344  LAENFRTFNLG  354
             A     +N+G
Sbjct  228  GAVKGEIYNIG  238


>CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase.  
Length=327

 Score = 144 bits (367),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 132/388 (34%), Gaps = 87/388 (22%)

Query  50   LVTGGLGFIGSHTTLELLKANYNVIVIDNLSNSFQIVFDRIKLLASQYHERQGTKMPSLH  109
            L+TG  G  GS+    LL+  Y V  I   S+SF     R++      H        +L 
Sbjct  1    LITGITGQDGSYLAELLLEKGYEVHGIVRRSSSF--NTGRLE------HLYDDHLNGNLV  52

Query  110  LHAHDYRDTAALKELLEQHQTQTRWGTTKSKISGVIHFAAYKAVEESIRNPLKYYANNVS  169
            LH  D  D++ L  LL + Q              + + AA   V+ S   P      NV 
Sbjct  53   LHYGDLTDSSNLVRLLAEVQ-----------PDEIYNLAAQSHVDVSFEQPEYTADTNVL  101

Query  170  G---LIDFATTLGDYGIKTFIFSSSATVYGTLATSGLPLKEELCTHKEEIYTDHDGSERI  226
            G   L++   +LG      F  +S++ VYG +     P  E   T               
Sbjct  102  GTLRLLEAIRSLGLEKKVRFYQASTSEVYGKVQEV--PQTET--TPF-------------  144

Query  227  VQPGCTGITNPYGRTKWICEAILADLAASDPEWTIVALRYFNPIGCDESGLLGEDPRQTP  286
              P      +PY   K   + I+ +   S   +       FN     ES   GE   +  
Sbjct  145  -YP-----RSPYAAAKLYADWIVVNYRESYGLFACNG-ILFN----HESPRRGE---RFV  190

Query  287  TNLLP-VVVKVMTGEYRELQMFGTDWNTEDGTAVRDFIHVTDLARGHIAALSAANEGKLA  345
            T  +   V ++  G+  +L +        +  A RD+ H  D        L         
Sbjct  191  TRKITRGVARIKLGKQEKLYLG-------NLDAKRDWGHARDYVEAMWLMLQQDKPD---  240

Query  346  ENFRTFNLGTGRGHSVKEVVET-------------------MEEVSSKHIPRRAADRRAG  386
                 + + TG  H+V+E VE                     +     H+       R G
Sbjct  241  ----DYVIATGETHTVREFVEKAFLELGLTITWEGKGEIGYFKASGKVHVLIDPRYFRPG  296

Query  387  DVGSCVAVATRSQQELNWKTEKSLKDAC  414
            +V   +   +++++EL WK + S ++  
Sbjct  297  EVDRLLGDPSKAKEELGWKPKVSFEELV  324



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00026834

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  147     2e-42
CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase      144     2e-40


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 147 bits (374),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 80/311 (26%), Positives = 123/311 (40%), Gaps = 78/311 (25%)

Query  49   ILVTGGLGFIGSHTTLELLKANYNVIVIDNLSNSFQIVFDRIKLLASQYHERQGTKMPSL  108
            ILVTG  GFIGSH    LL+  Y VI +D L+++                     ++  L
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTA-----------------RLADL  43

Query  109  HLHAHDYRDTAALKELLEQHQTQTRWGTTKSKISGVIHFAAYKAVEESIRNPLKYYANNV  168
                 D  D  AL++LL   +              VIH AA   V  SI +P  +   NV
Sbjct  44   RFVEGDLTDRDALEKLLADVR-----------PDAVIHLAAVGGVGASIEDPEDFIEANV  92

Query  169  SGLIDFATTLGDYGIKTFIFSSSATVYGTLATSGLPLKEELCTHKEEIYTDHDGSERIVQ  228
             G ++        G+K F+F+SS+ VYG    + +P +E   T    +            
Sbjct  93   LGTLNLLEAARKAGVKRFLFASSSEVYG--DGAEIPQEET--TLTGPLAP----------  138

Query  229  PGCTGITNPYGRTK----WICEAILADLAASDPEWTIVALRYFNPIGCDESGLLGEDPRQ  284
                   +PY   K    W+  A      A+      V LR FN  G         D   
Sbjct  139  ------NSPYAAAKLAGEWLVLA-----YAAAYGLRAVILRLFNVYG-------PGDNEG  180

Query  285  TPTNLLPVVV-KVMTGEYRELQMFGTDWNTEDGTAVRDFIHVTDLARGHIAALSAANEGK  343
              + ++P ++ +++ G+   + ++G      DGT  RDF++V D+AR  + AL       
Sbjct  181  FVSRVIPALIRRILEGK--PILLWG------DGTQRRDFLYVDDVARAILLALE-----H  227

Query  344  LAENFRTFNLG  354
             A     +N+G
Sbjct  228  GAVKGEIYNIG  238


>CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase.  
Length=327

 Score = 144 bits (367),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 132/388 (34%), Gaps = 87/388 (22%)

Query  50   LVTGGLGFIGSHTTLELLKANYNVIVIDNLSNSFQIVFDRIKLLASQYHERQGTKMPSLH  109
            L+TG  G  GS+    LL+  Y V  I   S+SF     R++      H        +L 
Sbjct  1    LITGITGQDGSYLAELLLEKGYEVHGIVRRSSSF--NTGRLE------HLYDDHLNGNLV  52

Query  110  LHAHDYRDTAALKELLEQHQTQTRWGTTKSKISGVIHFAAYKAVEESIRNPLKYYANNVS  169
            LH  D  D++ L  LL + Q              + + AA   V+ S   P      NV 
Sbjct  53   LHYGDLTDSSNLVRLLAEVQ-----------PDEIYNLAAQSHVDVSFEQPEYTADTNVL  101

Query  170  G---LIDFATTLGDYGIKTFIFSSSATVYGTLATSGLPLKEELCTHKEEIYTDHDGSERI  226
            G   L++   +LG      F  +S++ VYG +     P  E   T               
Sbjct  102  GTLRLLEAIRSLGLEKKVRFYQASTSEVYGKVQEV--PQTET--TPF-------------  144

Query  227  VQPGCTGITNPYGRTKWICEAILADLAASDPEWTIVALRYFNPIGCDESGLLGEDPRQTP  286
              P      +PY   K   + I+ +   S   +       FN     ES   GE   +  
Sbjct  145  -YP-----RSPYAAAKLYADWIVVNYRESYGLFACNG-ILFN----HESPRRGE---RFV  190

Query  287  TNLLP-VVVKVMTGEYRELQMFGTDWNTEDGTAVRDFIHVTDLARGHIAALSAANEGKLA  345
            T  +   V ++  G+  +L +        +  A RD+ H  D        L         
Sbjct  191  TRKITRGVARIKLGKQEKLYLG-------NLDAKRDWGHARDYVEAMWLMLQQDKPD---  240

Query  346  ENFRTFNLGTGRGHSVKEVVET-------------------MEEVSSKHIPRRAADRRAG  386
                 + + TG  H+V+E VE                     +     H+       R G
Sbjct  241  ----DYVIATGETHTVREFVEKAFLELGLTITWEGKGEIGYFKASGKVHVLIDPRYFRPG  296

Query  387  DVGSCVAVATRSQQELNWKTEKSLKDAC  414
            +V   +   +++++EL WK + S ++  
Sbjct  297  EVDRLLGDPSKAKEELGWKPKVSFEELV  324



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00026835

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00021926

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00021928

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00021927

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00021929

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00026836

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00021933

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific pho...  173     8e-54


>CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific phospholipase 
C, X domain.  This associates with pfam00387 to form a single 
structural unit.
Length=142

 Score = 173 bits (442),  Expect = 8e-54, Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 93/237 (39%), Gaps = 95/237 (40%)

Query  96   LSAPITDYYVSSSHNTYLTGNQLYSDAAAAAYTNVLLNGCRCVEIDVWDGDADDDSVSGD  155
            +S P++ Y++SSSHNTYLTG+QL  +++  AY   LL GCRCVE+               
Sbjct  1    MSQPLSHYFISSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVEL---------------  45

Query  156  DTSSSSSSSSEWSSDEENPSRRKKQDVQKTDGSTQSAKAPSRRKGLSSKLGSLLGRKSSP  215
                                     D    DG                            
Sbjct  46   -------------------------DCW--DG----------------------------  50

Query  216  PNGATDKPASTATAAAVGTAAQTLRRPEPRVLHGHTLTKGTKFRDVCYAIRDSAFVASDL  275
            P+G                        EP V HG+TLT    FRDV  AI+D AFV S  
Sbjct  51   PDG------------------------EPVVYHGYTLTSKIPFRDVLEAIKDYAFVTSPY  86

Query  276  PVIVSLEVHTCIEQQATMVEIMEEAFKGMLIEVTPELEASQAPPPLESLKRKILIKV  332
            PVI+SLE H   EQQ  M EI++E F  ML    P  +     P  E LK KILIK 
Sbjct  87   PVILSLENHCSPEQQKKMAEILKEIFGDMLY-TPPLDDDLTELPSPEDLKGKILIKG  142



Lambda      K        H        a         alpha
   0.310    0.125    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00021932

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00021931

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00021934

Length=652
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific pho...  188     1e-57
CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific pho...  173     6e-52


>CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase 
C, Y domain.  This associates with pfam00388 to form a single 
structural unit.
Length=114

 Score = 188 bits (479),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 57/114 (50%), Positives = 73/114 (64%), Gaps = 2/114 (2%)

Query  378  LSRLAVFTKGFSFRQFTQPEAKVPGHVFSLSENAAREAYAKDRDALLEHNRHFFMRVYPY  437
            LS L V+T+   F+ F+ PE+K P H+FS SE+ A +       A ++HNR   MRVYP 
Sbjct  1    LSDLVVYTQSVKFKSFSTPESKTPNHIFSFSESKALKLIKSSSAAFVKHNRRHLMRVYPK  60

Query  438  GLRVNSSNPDPTFFWRCGAQIVALNWQNLDKGMMLNRGMFTS--EPGWVLKPQG  489
            G RV+SSN +P  FW CG Q+VALNWQ  D+GM LN GMF      G+VLKP+ 
Sbjct  61   GTRVDSSNFNPQPFWNCGVQMVALNWQTPDEGMQLNEGMFADNGGCGYVLKPEF  114


>CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific phospholipase 
C, X domain.  This associates with pfam00387 to form a single 
structural unit.
Length=142

 Score = 173 bits (442),  Expect = 6e-52, Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 93/237 (39%), Gaps = 95/237 (40%)

Query  96   LSAPITDYYVSSSHNTYLTGNQLYSDAAAAAYTNVLLNGCRCVEIDVWDGDADDDSVSGD  155
            +S P++ Y++SSSHNTYLTG+QL  +++  AY   LL GCRCVE+               
Sbjct  1    MSQPLSHYFISSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVEL---------------  45

Query  156  DTSSSSSSSSEWSSDEENPSRRKKQDVQKTDGSTQSAKAPSRRKGLSSKLGSLLGRKSSP  215
                                     D    DG                            
Sbjct  46   -------------------------DCW--DG----------------------------  50

Query  216  PNGATDKPASTATAAAVGTAAQTLRRPEPRVLHGHTLTKGTKFRDVCYAIRDSAFVASDL  275
            P+G                        EP V HG+TLT    FRDV  AI+D AFV S  
Sbjct  51   PDG------------------------EPVVYHGYTLTSKIPFRDVLEAIKDYAFVTSPY  86

Query  276  PVIVSLEVHTCIEQQATMVEIMEEAFKGMLIEVTPELEASQAPPPLESLKRKILIKV  332
            PVI+SLE H   EQQ  M EI++E F  ML    P  +     P  E LK KILIK 
Sbjct  87   PVILSLENHCSPEQQKKMAEILKEIFGDMLY-TPPLDDDLTELPSPEDLKGKILIKG  142



Lambda      K        H        a         alpha
   0.313    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00021935

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific pho...  173     8e-54


>CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific phospholipase 
C, X domain.  This associates with pfam00387 to form a single 
structural unit.
Length=142

 Score = 173 bits (442),  Expect = 8e-54, Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 93/237 (39%), Gaps = 95/237 (40%)

Query  96   LSAPITDYYVSSSHNTYLTGNQLYSDAAAAAYTNVLLNGCRCVEIDVWDGDADDDSVSGD  155
            +S P++ Y++SSSHNTYLTG+QL  +++  AY   LL GCRCVE+               
Sbjct  1    MSQPLSHYFISSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVEL---------------  45

Query  156  DTSSSSSSSSEWSSDEENPSRRKKQDVQKTDGSTQSAKAPSRRKGLSSKLGSLLGRKSSP  215
                                     D    DG                            
Sbjct  46   -------------------------DCW--DG----------------------------  50

Query  216  PNGATDKPASTATAAAVGTAAQTLRRPEPRVLHGHTLTKGTKFRDVCYAIRDSAFVASDL  275
            P+G                        EP V HG+TLT    FRDV  AI+D AFV S  
Sbjct  51   PDG------------------------EPVVYHGYTLTSKIPFRDVLEAIKDYAFVTSPY  86

Query  276  PVIVSLEVHTCIEQQATMVEIMEEAFKGMLIEVTPELEASQAPPPLESLKRKILIKV  332
            PVI+SLE H   EQQ  M EI++E F  ML    P  +     P  E LK KILIK 
Sbjct  87   PVILSLENHCSPEQQKKMAEILKEIFGDMLY-TPPLDDDLTELPSPEDLKGKILIKG  142



Lambda      K        H        a         alpha
   0.310    0.125    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00021936

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific pho...  188     2e-60


>CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase 
C, Y domain.  This associates with pfam00388 to form a single 
structural unit.
Length=114

 Score = 188 bits (479),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 57/114 (50%), Positives = 73/114 (64%), Gaps = 2/114 (2%)

Query  86   LSRLAVFTKGFSFRQFTQPEAKVPGHVFSLSENAAREAYAKDRDALLEHNRHFFMRVYPY  145
            LS L V+T+   F+ F+ PE+K P H+FS SE+ A +       A ++HNR   MRVYP 
Sbjct  1    LSDLVVYTQSVKFKSFSTPESKTPNHIFSFSESKALKLIKSSSAAFVKHNRRHLMRVYPK  60

Query  146  GLRVNSSNPDPTFFWRCGAQIVALNWQNLDKGMMLNRGMFTS--EPGWVLKPQG  197
            G RV+SSN +P  FW CG Q+VALNWQ  D+GM LN GMF      G+VLKP+ 
Sbjct  61   GTRVDSSNFNPQPFWNCGVQMVALNWQTPDEGMQLNEGMFADNGGCGYVLKPEF  114



Lambda      K        H        a         alpha
   0.317    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00026838

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00026839

Length=652
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific pho...  188     1e-57
CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific pho...  173     6e-52


>CDD:459794 pfam00387, PI-PLC-Y, Phosphatidylinositol-specific phospholipase 
C, Y domain.  This associates with pfam00388 to form a single 
structural unit.
Length=114

 Score = 188 bits (479),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 57/114 (50%), Positives = 73/114 (64%), Gaps = 2/114 (2%)

Query  378  LSRLAVFTKGFSFRQFTQPEAKVPGHVFSLSENAAREAYAKDRDALLEHNRHFFMRVYPY  437
            LS L V+T+   F+ F+ PE+K P H+FS SE+ A +       A ++HNR   MRVYP 
Sbjct  1    LSDLVVYTQSVKFKSFSTPESKTPNHIFSFSESKALKLIKSSSAAFVKHNRRHLMRVYPK  60

Query  438  GLRVNSSNPDPTFFWRCGAQIVALNWQNLDKGMMLNRGMFTS--EPGWVLKPQG  489
            G RV+SSN +P  FW CG Q+VALNWQ  D+GM LN GMF      G+VLKP+ 
Sbjct  61   GTRVDSSNFNPQPFWNCGVQMVALNWQTPDEGMQLNEGMFADNGGCGYVLKPEF  114


>CDD:459795 pfam00388, PI-PLC-X, Phosphatidylinositol-specific phospholipase 
C, X domain.  This associates with pfam00387 to form a single 
structural unit.
Length=142

 Score = 173 bits (442),  Expect = 6e-52, Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 93/237 (39%), Gaps = 95/237 (40%)

Query  96   LSAPITDYYVSSSHNTYLTGNQLYSDAAAAAYTNVLLNGCRCVEIDVWDGDADDDSVSGD  155
            +S P++ Y++SSSHNTYLTG+QL  +++  AY   LL GCRCVE+               
Sbjct  1    MSQPLSHYFISSSHNTYLTGDQLTGESSVEAYIRALLRGCRCVEL---------------  45

Query  156  DTSSSSSSSSEWSSDEENPSRRKKQDVQKTDGSTQSAKAPSRRKGLSSKLGSLLGRKSSP  215
                                     D    DG                            
Sbjct  46   -------------------------DCW--DG----------------------------  50

Query  216  PNGATDKPASTATAAAVGTAAQTLRRPEPRVLHGHTLTKGTKFRDVCYAIRDSAFVASDL  275
            P+G                        EP V HG+TLT    FRDV  AI+D AFV S  
Sbjct  51   PDG------------------------EPVVYHGYTLTSKIPFRDVLEAIKDYAFVTSPY  86

Query  276  PVIVSLEVHTCIEQQATMVEIMEEAFKGMLIEVTPELEASQAPPPLESLKRKILIKV  332
            PVI+SLE H   EQQ  M EI++E F  ML    P  +     P  E LK KILIK 
Sbjct  87   PVILSLENHCSPEQQKKMAEILKEIFGDMLY-TPPLDDDLTELPSPEDLKGKILIKG  142



Lambda      K        H        a         alpha
   0.313    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00026840

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00021938

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00021939

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.138    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00026841

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00021941

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00026843

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00026844

Length=311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, ...  145     1e-42


>CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
 This family consists of taurine catabolism dioxygenases 
of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent 
taurine dioxygenase. This enzyme catalyzes 
the oxygenolytic release of sulfite from taurine. TfdA 
from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate 
dioxygenase. TfdA from Alcaligenes eutrophus 
JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also 
included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.
Length=264

 Score = 145 bits (368),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 71/199 (36%), Positives = 98/199 (49%), Gaps = 7/199 (4%)

Query  101  LTPTIGSE-VRGVQLSQLTKEGKDQLALYVAQRKVVAFRDQDFAHLPIEKALEFGGYFGR  159
            LTP IG+E V       L  E +++L   +A+  V+ FR Q    L  E+ L F   FG 
Sbjct  5    LTPAIGAEIVDLPDPLALDDELREELRELLAEHGVLLFRGQ---PLSPEQLLAFARRFGP  61

Query  160  HHIHQTSGAPRGYPEIHLVHRGADDRSGAEFLATRTNTVTWHSDVTFEKQPPGTTFLYLL  219
             +     G   GYPE+  V   +     A+   T    + WH+D+++ + PPG   L+ L
Sbjct  62   LYGTPGGGRNDGYPEVLDV---SSVYPDADPANTAYTGLPWHTDLSYLEDPPGIQLLHCL  118

Query  220  DGPTSGGDTLFADMVQAYKRLSPEFRKRLHGLKAVHSGIEQINASLNRGGIARREGITSE  279
            +    GG+TLFAD   AY  L  E  +   GL AVHS       +      A  +   + 
Sbjct  119  EAAPEGGETLFADGRAAYNALPEELPELFEGLTAVHSYFRYRGEAYPANRPADDKHPPTG  178

Query  280  HPIVRTHPVTGEKALFVNP  298
            HP+VRTHPVTG KAL+VNP
Sbjct  179  HPVVRTHPVTGRKALYVNP  197



Lambda      K        H        a         alpha
   0.317    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00026845

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, ...  131     3e-39


>CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
 This family consists of taurine catabolism dioxygenases 
of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent 
taurine dioxygenase. This enzyme catalyzes 
the oxygenolytic release of sulfite from taurine. TfdA 
from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate 
dioxygenase. TfdA from Alcaligenes eutrophus 
JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also 
included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.
Length=264

 Score = 131 bits (331),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 67/135 (50%), Gaps = 2/135 (1%)

Query  1    MVQAYKRLSPEFRKRLHGLKAVHSGIEQINASLNRGGIARREGITSEHPIVRTHPVTGEK  60
               AY  L  E  +   GL AVHS       +      A  +   + HP+VRTHPVTG K
Sbjct  132  GRAAYNALPEELPELFEGLTAVHSYFRYRGEAYPANRPADDKHPPTGHPVVRTHPVTGRK  191

Query  61   ALFVNPQFTRYIVGYKKEESDMLLKFLYDHIALSQDLQTRVRWLPGTVVVWDNRVVAHSA  120
            AL+VNP F   IVG    ESD  L  L+       +   R +W PG +V+WDNR V H  
Sbjct  192  ALYVNPPFATRIVGLGTPESDEALDALFALAT-DPEFTYRFKWQPGDLVIWDNRRVLHGR  250

Query  121  LFDWEDGQRRHLARI  135
               ++ G+RRHL R 
Sbjct  251  T-AFDPGERRHLLRA  264



Lambda      K        H        a         alpha
   0.321    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00021944

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, ...  173     4e-53


>CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
 This family consists of taurine catabolism dioxygenases 
of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent 
taurine dioxygenase. This enzyme catalyzes 
the oxygenolytic release of sulfite from taurine. TfdA 
from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate 
dioxygenase. TfdA from Alcaligenes eutrophus 
JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also 
included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.
Length=264

 Score = 173 bits (441),  Expect = 4e-53, Method: Composition-based stats.
 Identities = 80/225 (36%), Positives = 108/225 (48%), Gaps = 7/225 (3%)

Query  101  LTPTIGSE-VRGVQLSQLTKEGKDQLALYVAQRKVVAFRDQDFAHLPIEKALEFGGYFGR  159
            LTP IG+E V       L  E +++L   +A+  V+ FR Q    L  E+ L F   FG 
Sbjct  5    LTPAIGAEIVDLPDPLALDDELREELRELLAEHGVLLFRGQ---PLSPEQLLAFARRFGP  61

Query  160  HHIHQTSGAPRGYPEIHLVHRGADDRSGAEFLATRTNTVTWHSDVTFEKQPPGTTFLYLL  219
             +     G   GYPE+  V   +     A+   T    + WH+D+++ + PPG   L+ L
Sbjct  62   LYGTPGGGRNDGYPEVLDV---SSVYPDADPANTAYTGLPWHTDLSYLEDPPGIQLLHCL  118

Query  220  DGPTSGGDTLFADMVQAYKRLSPEFRKRLHGLKAVHSGIEQINASLNRGGIARREGITSE  279
            +    GG+TLFAD   AY  L  E  +   GL AVHS       +      A  +   + 
Sbjct  119  EAAPEGGETLFADGRAAYNALPEELPELFEGLTAVHSYFRYRGEAYPANRPADDKHPPTG  178

Query  280  HPIVRTHPVTGEKALFVNPQFTRYIVGYKKEESDMLLKFLYDHIA  324
            HP+VRTHPVTG KAL+VNP F   IVG    ESD  L  L+    
Sbjct  179  HPVVRTHPVTGRKALYVNPPFATRIVGLGTPESDEALDALFALAT  223



Lambda      K        H        a         alpha
   0.317    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00026846

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, ...  131     3e-37


>CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
 This family consists of taurine catabolism dioxygenases 
of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent 
taurine dioxygenase. This enzyme catalyzes 
the oxygenolytic release of sulfite from taurine. TfdA 
from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate 
dioxygenase. TfdA from Alcaligenes eutrophus 
JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also 
included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.
Length=264

 Score = 131 bits (332),  Expect = 3e-37, Method: Composition-based stats.
 Identities = 63/190 (33%), Positives = 90/190 (47%), Gaps = 7/190 (4%)

Query  101  LTPTIGSE-VRGVQLSQLTKEGKDQLALYVAQRKVVAFRDQDFAHLPIEKALEFGGYFGR  159
            LTP IG+E V       L  E +++L   +A+  V+ FR Q    L  E+ L F   FG 
Sbjct  5    LTPAIGAEIVDLPDPLALDDELREELRELLAEHGVLLFRGQ---PLSPEQLLAFARRFGP  61

Query  160  HHIHQTSGAPRGYPEIHLVHRGADDRSGAEFLATRTNTVTWHSDVTFEKQPPGTTFLYLL  219
             +     G   GYPE+  V   +     A+   T    + WH+D+++ + PPG   L+ L
Sbjct  62   LYGTPGGGRNDGYPEVLDV---SSVYPDADPANTAYTGLPWHTDLSYLEDPPGIQLLHCL  118

Query  220  DGPTSGGDTLFADMVQAYKRLSPEFRKRLHGLKAVHSGIEQINASLNRGGIARREGITSE  279
            +    GG+TLFAD   AY  L  E  +   GL AVHS       +      A  +   + 
Sbjct  119  EAAPEGGETLFADGRAAYNALPEELPELFEGLTAVHSYFRYRGEAYPANRPADDKHPPTG  178

Query  280  HPIVRTHPVS  289
            HP+VRTHPV+
Sbjct  179  HPVVRTHPVT  188



Lambda      K        H        a         alpha
   0.317    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00021946

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, ...  211     4e-67


>CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
 This family consists of taurine catabolism dioxygenases 
of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent 
taurine dioxygenase. This enzyme catalyzes 
the oxygenolytic release of sulfite from taurine. TfdA 
from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate 
dioxygenase. TfdA from Alcaligenes eutrophus 
JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also 
included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.
Length=264

 Score = 211 bits (539),  Expect = 4e-67, Method: Composition-based stats.
 Identities = 97/268 (36%), Positives = 132/268 (49%), Gaps = 9/268 (3%)

Query  101  LTPTIGSE-VRGVQLSQLTKEGKDQLALYVAQRKVVAFRDQDFAHLPIEKALEFGGYFGR  159
            LTP IG+E V       L  E +++L   +A+  V+ FR Q    L  E+ L F   FG 
Sbjct  5    LTPAIGAEIVDLPDPLALDDELREELRELLAEHGVLLFRGQ---PLSPEQLLAFARRFGP  61

Query  160  HHIHQTSGAPRGYPEIHLVHRGADDRSGAEFLATRTNTVTWHSDVTFEKQPPGTTFLYLL  219
             +     G   GYPE+  V   +     A+   T    + WH+D+++ + PPG   L+ L
Sbjct  62   LYGTPGGGRNDGYPEVLDV---SSVYPDADPANTAYTGLPWHTDLSYLEDPPGIQLLHCL  118

Query  220  DGPTSGGDTLFADMVQAYKRLSPEFRKRLHGLKAVHSGIEQINASLNRGGIARREGITSE  279
            +    GG+TLFAD   AY  L  E  +   GL AVHS       +      A  +   + 
Sbjct  119  EAAPEGGETLFADGRAAYNALPEELPELFEGLTAVHSYFRYRGEAYPANRPADDKHPPTG  178

Query  280  HPIVRTHPVTGEKALFVNPQFTRYIVGYKKEESDMLLKFLYDHIALSQDLQTRVRWLPGT  339
            HP+VRTHPVTG KAL+VNP F   IVG    ESD  L  L+       +   R +W PG 
Sbjct  179  HPVVRTHPVTGRKALYVNPPFATRIVGLGTPESDEALDALFALAT-DPEFTYRFKWQPGD  237

Query  340  VVVWDNRVVAHSALFDWEDGQRRHLARI  367
            +V+WDNR V H     ++ G+RRHL R 
Sbjct  238  LVIWDNRRVLHGRT-AFDPGERRHLLRA  264



Lambda      K        H        a         alpha
   0.318    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00021947

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, ...  131     3e-39


>CDD:367137 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. 
 This family consists of taurine catabolism dioxygenases 
of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent 
taurine dioxygenase. This enzyme catalyzes 
the oxygenolytic release of sulfite from taurine. TfdA 
from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate 
dioxygenase. TfdA from Alcaligenes eutrophus 
JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also 
included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.
Length=264

 Score = 131 bits (331),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 67/135 (50%), Gaps = 2/135 (1%)

Query  1    MVQAYKRLSPEFRKRLHGLKAVHSGIEQINASLNRGGIARREGITSEHPIVRTHPVTGEK  60
               AY  L  E  +   GL AVHS       +      A  +   + HP+VRTHPVTG K
Sbjct  132  GRAAYNALPEELPELFEGLTAVHSYFRYRGEAYPANRPADDKHPPTGHPVVRTHPVTGRK  191

Query  61   ALFVNPQFTRYIVGYKKEESDMLLKFLYDHIALSQDLQTRVRWLPGTVVVWDNRVVAHSA  120
            AL+VNP F   IVG    ESD  L  L+       +   R +W PG +V+WDNR V H  
Sbjct  192  ALYVNPPFATRIVGLGTPESDEALDALFALAT-DPEFTYRFKWQPGDLVIWDNRRVLHGR  250

Query  121  LFDWEDGQRRHLARI  135
               ++ G+RRHL R 
Sbjct  251  T-AFDPGERRHLLRA  264



Lambda      K        H        a         alpha
   0.321    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00026847

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.146    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00021948

Length=679


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 864226940


Query= TCONS_00026848

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.146    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00021949

Length=494


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00026849

Length=473


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 587408632


Query= TCONS_00026850

Length=888


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1138362602


Query= TCONS_00026851

Length=827


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050796248


Query= TCONS_00021951

Length=455


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00021953

Length=498


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00026852

Length=516


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00021962

Length=516


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00021952

Length=516


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00021954

Length=888


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1138362602


Query= TCONS_00026853

Length=870


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1112523350


Query= TCONS_00026854

Length=848


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1080942042


Query= TCONS_00021955

Length=888


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1138362602


Query= TCONS_00021956

Length=827


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050796248


Query= TCONS_00026855

Length=827


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050796248


Query= TCONS_00021957

Length=888


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0708    0.140     1.90     42.6     43.6 

Effective search space used: 1138362602


Query= TCONS_00021958

Length=827


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050796248


Query= TCONS_00021959

Length=888


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1138362602


Query= TCONS_00026856

Length=827


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050796248


Query= TCONS_00021960

Length=1033
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463720 pfam12825, DUF3818, Domain of unknown function in PX-p...  507     3e-173


>CDD:463720 pfam12825, DUF3818, Domain of unknown function in PX-proteins 
(DUF3818).  This domain is found on proteins carrying a PX 
domain. Its function is unknown.
Length=333

 Score = 507 bits (1308),  Expect = 3e-173, Method: Composition-based stats.
 Identities = 189/335 (56%), Positives = 244/335 (73%), Gaps = 6/335 (2%)

Query  278  LFSEIREKNTIADLSPQYQKFAEWLRIEVAATLYHVFLAEDNSPEMFAQFKRIHSLVPYT  337
            LF EI+EK +I DLSP YQKF EW RIE+A+TLY +F+  DNS E+FAQ KR+HSL+PY 
Sbjct  1    LFDEIKEKESIEDLSPPYQKFIEWARIELASTLYQLFVGSDNSSELFAQLKRLHSLMPYF  60

Query  338  LLKNVIRIANPAAVMSGVLDLFLAQPFGSRSLLQRIFSMALNDGIKQFQKSIDSLAAKVD  397
            LLK ++RI NP A+M GVLDLFLAQPFG RSLLQR+FS  LND +K  +K I+ L AK+D
Sbjct  61   LLKQILRITNPMAMMKGVLDLFLAQPFGGRSLLQRMFSSILNDDLKHLEKDIEELEAKID  120

Query  398  DPVLTGKLKEFTHADENIKNEIRTEAATEDVDLIVAILRSDLIAPELTPEQVGKVFNAYV  457
             PV+  KLK+F +A E +K+EIR EA  ED+DL+VAILRS  + P L+ EQ+ +V  AY 
Sbjct  121  SPVMCEKLKKFVYAPEEVKDEIREEAEEEDLDLLVAILRSAEL-PRLSKEQLQRVIEAYK  179

Query  458  AWNHAV----DNVDLEMQEGAQWFANMKQLLKLYTRQRDKAMILSIIEEPVTLQLFRDLF  513
            AW  A+       D E  E A+ F+++KQLLKLY+R+RDK  +  + +EP T QL +DL 
Sbjct  180  AWKAAMESEPSADDGETDEDAELFSDLKQLLKLYSRERDKEQMRQLWQEPETAQLLKDLV  239

Query  514  TIFYEPLVRVYKSANVYSSITDFAQFADDAIAVIEKCHRQDVSADPNQTVQAFIDLCERH  573
            TIFYEPLVRVYK+AN+  ++ DF +F DD I ++E    +   +DP  TVQAFIDL +RH
Sbjct  240  TIFYEPLVRVYKAANISDALGDFQKFMDDLIKLVEALRNE-EGSDPFNTVQAFIDLVDRH  298

Query  574  QDNFYKFIHEVHLHDNGLFTSLMGWIEDILEFLRH  608
            + +FYKF+HEVH +D GLF  L+ WIE IL FLR+
Sbjct  299  EQSFYKFVHEVHSNDTGLFDGLIQWIESILNFLRN  333



Lambda      K        H        a         alpha
   0.316    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1326675812


Query= TCONS_00021961

Length=888


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1138362602


Query= TCONS_00026857

Length=827


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050796248


Query= TCONS_00026858

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396850 pfam02475, Met_10, Met-10+ like-protein. The methionin...  208     9e-66


>CDD:396850 pfam02475, Met_10, Met-10+ like-protein.  The methionine-10 mutant 
allele of N. crassa codes for a protein of unknown function. 
However, homologous proteins have been found in yeast, 
suggesting this protein may be involved in methionine biosynthesis, 
transport and/or utilisation.
Length=198

 Score = 208 bits (532),  Expect = 9e-66, Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 111/231 (48%), Gaps = 49/231 (21%)

Query  151  GFTQVGHVLHLNLREQYLPYKYLIAEILKDKNKVIRTVINKTEDVGSHSEFRTFPFELLA  210
             F  +G V+ LNLRE+   Y+ +I E + +K KV +TV+ K  +V  + EFRT  +E+LA
Sbjct  2    SFDIIGDVVILNLREELDEYRKVIGEAILEKTKV-KTVLRKVSEV--YGEFRTPRYEVLA  58

Query  211  GDNDLNVVQHEQDCEFRFDYSRVYWNSRLETEHRRLVEKFNKGEMVCDVMAGVGPFAVPA  270
            G  D   +  E  C F+ D ++VYW+ RL  E  R+ +    GE+V D+ AG+GPF++P 
Sbjct  59   GS-DTETIHKENGCRFKVDVAKVYWSPRLIAERERIAKLVEPGEVVVDMFAGIGPFSIPI  117

Query  271  GK--KKIFVWANDLNPHGYEVMQDAIKRNKVEGFVTPFNMDGREFIRWSAKELLETEPVT  328
             K  K   V+A +LNP  Y+ +++ IK NKVE  V P   D RE I              
Sbjct  118  AKHSKARRVYAIELNPESYKYLKENIKLNKVEDVVKPILGDVREVI--------------  163

Query  329  VTIHPKVRRDRKSGNKVEQAPPPHPEEYHRPVFFDHYVMNLPATAIEFLDA  379
                                              D  VMNLP +A EFLD 
Sbjct  164  -----------------------------LEDVADRVVMNLPGSAHEFLDK  185



Lambda      K        H        a         alpha
   0.320    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00026859

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396850 pfam02475, Met_10, Met-10+ like-protein. The methionin...  208     9e-66


>CDD:396850 pfam02475, Met_10, Met-10+ like-protein.  The methionine-10 mutant 
allele of N. crassa codes for a protein of unknown function. 
However, homologous proteins have been found in yeast, 
suggesting this protein may be involved in methionine biosynthesis, 
transport and/or utilisation.
Length=198

 Score = 208 bits (532),  Expect = 9e-66, Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 111/231 (48%), Gaps = 49/231 (21%)

Query  151  GFTQVGHVLHLNLREQYLPYKYLIAEILKDKNKVIRTVINKTEDVGSHSEFRTFPFELLA  210
             F  +G V+ LNLRE+   Y+ +I E + +K KV +TV+ K  +V  + EFRT  +E+LA
Sbjct  2    SFDIIGDVVILNLREELDEYRKVIGEAILEKTKV-KTVLRKVSEV--YGEFRTPRYEVLA  58

Query  211  GDNDLNVVQHEQDCEFRFDYSRVYWNSRLETEHRRLVEKFNKGEMVCDVMAGVGPFAVPA  270
            G  D   +  E  C F+ D ++VYW+ RL  E  R+ +    GE+V D+ AG+GPF++P 
Sbjct  59   GS-DTETIHKENGCRFKVDVAKVYWSPRLIAERERIAKLVEPGEVVVDMFAGIGPFSIPI  117

Query  271  GK--KKIFVWANDLNPHGYEVMQDAIKRNKVEGFVTPFNMDGREFIRWSAKELLETEPVT  328
             K  K   V+A +LNP  Y+ +++ IK NKVE  V P   D RE I              
Sbjct  118  AKHSKARRVYAIELNPESYKYLKENIKLNKVEDVVKPILGDVREVI--------------  163

Query  329  VTIHPKVRRDRKSGNKVEQAPPPHPEEYHRPVFFDHYVMNLPATAIEFLDA  379
                                              D  VMNLP +A EFLD 
Sbjct  164  -----------------------------LEDVADRVVMNLPGSAHEFLDK  185



Lambda      K        H        a         alpha
   0.320    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00026860

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432813 pfam12828, PXB, PX-associated. This domain is associat...  165     2e-50


>CDD:432813 pfam12828, PXB, PX-associated.  This domain is associated with 
the PX domain.
Length=131

 Score = 165 bits (421),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 62/132 (47%), Positives = 76/132 (58%), Gaps = 6/132 (5%)

Query  27   PGQILTGKQEHYLKRELIGRQVRNEITELNSPTALHRFGAPFKSEFG-----EVAPVDSE  81
                LT  QEHYLK+EL   Q+  E+  L  P AL  FG PF                S+
Sbjct  1    SSSELTPLQEHYLKKELTHLQLYRELEALKDPDALSLFGYPFAPSKKTADAKSSYAPSSD  60

Query  82   LPILRYIFVHHVRKFPFLDQAREKEFWQDKLQVFLESFANKHVSSSEDRLEETKRRKLAR  141
            LP+LR++F   V  FPFL +A   EFWQDK+Q FLESFA  ++S S DR E TKR+KLA 
Sbjct  61   LPLLRFLFRRFVLTFPFL-RALPPEFWQDKVQPFLESFAEANLSESYDRGELTKRKKLAT  119

Query  142  KAEKLVELMMVS  153
            K  KL+EL+  S
Sbjct  120  KLSKLLELLFNS  131



Lambda      K        H        a         alpha
   0.316    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 575139000


Query= TCONS_00021963

Length=863
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463720 pfam12825, DUF3818, Domain of unknown function in PX-p...  503     1e-173
CDD:432813 pfam12828, PXB, PX-associated. This domain is associat...  152     1e-43 


>CDD:463720 pfam12825, DUF3818, Domain of unknown function in PX-proteins 
(DUF3818).  This domain is found on proteins carrying a PX 
domain. Its function is unknown.
Length=333

 Score = 503 bits (1297),  Expect = 1e-173, Method: Composition-based stats.
 Identities = 189/335 (56%), Positives = 244/335 (73%), Gaps = 6/335 (2%)

Query  436  LFSEIREKNTIADLSPQYQKFAEWLRIEVAATLYHVFLAEDNSPEMFAQFKRIHSLVPYT  495
            LF EI+EK +I DLSP YQKF EW RIE+A+TLY +F+  DNS E+FAQ KR+HSL+PY 
Sbjct  1    LFDEIKEKESIEDLSPPYQKFIEWARIELASTLYQLFVGSDNSSELFAQLKRLHSLMPYF  60

Query  496  LLKNVIRIANPAAVMSGVLDLFLAQPFGSRSLLQRIFSMALNDGIKQFQKSIDSLAAKVD  555
            LLK ++RI NP A+M GVLDLFLAQPFG RSLLQR+FS  LND +K  +K I+ L AK+D
Sbjct  61   LLKQILRITNPMAMMKGVLDLFLAQPFGGRSLLQRMFSSILNDDLKHLEKDIEELEAKID  120

Query  556  DPVLTGKLKEFTHADENIKNEIRTEAATEDVDLIVAILRSDLIAPELTPEQVGKVFNAYV  615
             PV+  KLK+F +A E +K+EIR EA  ED+DL+VAILRS  + P L+ EQ+ +V  AY 
Sbjct  121  SPVMCEKLKKFVYAPEEVKDEIREEAEEEDLDLLVAILRSAEL-PRLSKEQLQRVIEAYK  179

Query  616  AWNHAV----DNVDLEMQEGAQWFANMKQLLKLYTRQRDKAMILSIIEEPVTLQLFRDLF  671
            AW  A+       D E  E A+ F+++KQLLKLY+R+RDK  +  + +EP T QL +DL 
Sbjct  180  AWKAAMESEPSADDGETDEDAELFSDLKQLLKLYSRERDKEQMRQLWQEPETAQLLKDLV  239

Query  672  TIFYEPLVRVYKSANVYSSITDFAQFADDAIAVIEKCHRQDVSADPNQTVQAFIDLCERH  731
            TIFYEPLVRVYK+AN+  ++ DF +F DD I ++E    +   +DP  TVQAFIDL +RH
Sbjct  240  TIFYEPLVRVYKAANISDALGDFQKFMDDLIKLVEALRNE-EGSDPFNTVQAFIDLVDRH  298

Query  732  QDNFYKFIHEVHLHDNGLFTSLMGWIEDILEFLRH  766
            + +FYKF+HEVH +D GLF  L+ WIE IL FLR+
Sbjct  299  EQSFYKFVHEVHSNDTGLFDGLIQWIESILNFLRN  333


>CDD:432813 pfam12828, PXB, PX-associated.  This domain is associated with 
the PX domain.
Length=131

 Score = 152 bits (386),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 76/157 (48%), Gaps = 31/157 (20%)

Query  27   PGQILTGKQEHYLKRELIGRQVRNEITELNSPTALHRFGAPFKSEFG-----EVAPVDSE  81
                LT  QEHYLK+EL   Q+  E+  L  P AL  FG PF                S+
Sbjct  1    SSSELTPLQEHYLKKELTHLQLYRELEALKDPDALSLFGYPFAPSKKTADAKSSYAPSSD  60

Query  82   LPILRYIFVHHVRKFPFLDQAREKEFWQDKLQVVSNLHQFGLSAVAGDSLRLTYFFMQFL  141
            LP+LR++F   V  FPFL +A   EFWQDK+Q                          FL
Sbjct  61   LPLLRFLFRRFVLTFPFL-RALPPEFWQDKVQP-------------------------FL  94

Query  142  ESFANKHVSSSEDRLEETKRRKLARKAEKLVELMMVS  178
            ESFA  ++S S DR E TKR+KLA K  KL+EL+  S
Sbjct  95   ESFAEANLSESYDRGELTKRKKLATKLSKLLELLFNS  131



Lambda      K        H        a         alpha
   0.319    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1102474752


Query= TCONS_00021964

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396850 pfam02475, Met_10, Met-10+ like-protein. The methionin...  208     9e-66


>CDD:396850 pfam02475, Met_10, Met-10+ like-protein.  The methionine-10 mutant 
allele of N. crassa codes for a protein of unknown function. 
However, homologous proteins have been found in yeast, 
suggesting this protein may be involved in methionine biosynthesis, 
transport and/or utilisation.
Length=198

 Score = 208 bits (532),  Expect = 9e-66, Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 111/231 (48%), Gaps = 49/231 (21%)

Query  151  GFTQVGHVLHLNLREQYLPYKYLIAEILKDKNKVIRTVINKTEDVGSHSEFRTFPFELLA  210
             F  +G V+ LNLRE+   Y+ +I E + +K KV +TV+ K  +V  + EFRT  +E+LA
Sbjct  2    SFDIIGDVVILNLREELDEYRKVIGEAILEKTKV-KTVLRKVSEV--YGEFRTPRYEVLA  58

Query  211  GDNDLNVVQHEQDCEFRFDYSRVYWNSRLETEHRRLVEKFNKGEMVCDVMAGVGPFAVPA  270
            G  D   +  E  C F+ D ++VYW+ RL  E  R+ +    GE+V D+ AG+GPF++P 
Sbjct  59   GS-DTETIHKENGCRFKVDVAKVYWSPRLIAERERIAKLVEPGEVVVDMFAGIGPFSIPI  117

Query  271  GK--KKIFVWANDLNPHGYEVMQDAIKRNKVEGFVTPFNMDGREFIRWSAKELLETEPVT  328
             K  K   V+A +LNP  Y+ +++ IK NKVE  V P   D RE I              
Sbjct  118  AKHSKARRVYAIELNPESYKYLKENIKLNKVEDVVKPILGDVREVI--------------  163

Query  329  VTIHPKVRRDRKSGNKVEQAPPPHPEEYHRPVFFDHYVMNLPATAIEFLDA  379
                                              D  VMNLP +A EFLD 
Sbjct  164  -----------------------------LEDVADRVVMNLPGSAHEFLDK  185



Lambda      K        H        a         alpha
   0.320    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00021966

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396850 pfam02475, Met_10, Met-10+ like-protein. The methionin...  208     9e-66


>CDD:396850 pfam02475, Met_10, Met-10+ like-protein.  The methionine-10 mutant 
allele of N. crassa codes for a protein of unknown function. 
However, homologous proteins have been found in yeast, 
suggesting this protein may be involved in methionine biosynthesis, 
transport and/or utilisation.
Length=198

 Score = 208 bits (532),  Expect = 9e-66, Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 111/231 (48%), Gaps = 49/231 (21%)

Query  151  GFTQVGHVLHLNLREQYLPYKYLIAEILKDKNKVIRTVINKTEDVGSHSEFRTFPFELLA  210
             F  +G V+ LNLRE+   Y+ +I E + +K KV +TV+ K  +V  + EFRT  +E+LA
Sbjct  2    SFDIIGDVVILNLREELDEYRKVIGEAILEKTKV-KTVLRKVSEV--YGEFRTPRYEVLA  58

Query  211  GDNDLNVVQHEQDCEFRFDYSRVYWNSRLETEHRRLVEKFNKGEMVCDVMAGVGPFAVPA  270
            G  D   +  E  C F+ D ++VYW+ RL  E  R+ +    GE+V D+ AG+GPF++P 
Sbjct  59   GS-DTETIHKENGCRFKVDVAKVYWSPRLIAERERIAKLVEPGEVVVDMFAGIGPFSIPI  117

Query  271  GK--KKIFVWANDLNPHGYEVMQDAIKRNKVEGFVTPFNMDGREFIRWSAKELLETEPVT  328
             K  K   V+A +LNP  Y+ +++ IK NKVE  V P   D RE I              
Sbjct  118  AKHSKARRVYAIELNPESYKYLKENIKLNKVEDVVKPILGDVREVI--------------  163

Query  329  VTIHPKVRRDRKSGNKVEQAPPPHPEEYHRPVFFDHYVMNLPATAIEFLDA  379
                                              D  VMNLP +A EFLD 
Sbjct  164  -----------------------------LEDVADRVVMNLPGSAHEFLDK  185



Lambda      K        H        a         alpha
   0.320    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00021965

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396850 pfam02475, Met_10, Met-10+ like-protein. The methionin...  208     9e-66


>CDD:396850 pfam02475, Met_10, Met-10+ like-protein.  The methionine-10 mutant 
allele of N. crassa codes for a protein of unknown function. 
However, homologous proteins have been found in yeast, 
suggesting this protein may be involved in methionine biosynthesis, 
transport and/or utilisation.
Length=198

 Score = 208 bits (532),  Expect = 9e-66, Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 111/231 (48%), Gaps = 49/231 (21%)

Query  151  GFTQVGHVLHLNLREQYLPYKYLIAEILKDKNKVIRTVINKTEDVGSHSEFRTFPFELLA  210
             F  +G V+ LNLRE+   Y+ +I E + +K KV +TV+ K  +V  + EFRT  +E+LA
Sbjct  2    SFDIIGDVVILNLREELDEYRKVIGEAILEKTKV-KTVLRKVSEV--YGEFRTPRYEVLA  58

Query  211  GDNDLNVVQHEQDCEFRFDYSRVYWNSRLETEHRRLVEKFNKGEMVCDVMAGVGPFAVPA  270
            G  D   +  E  C F+ D ++VYW+ RL  E  R+ +    GE+V D+ AG+GPF++P 
Sbjct  59   GS-DTETIHKENGCRFKVDVAKVYWSPRLIAERERIAKLVEPGEVVVDMFAGIGPFSIPI  117

Query  271  GK--KKIFVWANDLNPHGYEVMQDAIKRNKVEGFVTPFNMDGREFIRWSAKELLETEPVT  328
             K  K   V+A +LNP  Y+ +++ IK NKVE  V P   D RE I              
Sbjct  118  AKHSKARRVYAIELNPESYKYLKENIKLNKVEDVVKPILGDVREVI--------------  163

Query  329  VTIHPKVRRDRKSGNKVEQAPPPHPEEYHRPVFFDHYVMNLPATAIEFLDA  379
                                              D  VMNLP +A EFLD 
Sbjct  164  -----------------------------LEDVADRVVMNLPGSAHEFLDK  185



Lambda      K        H        a         alpha
   0.320    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00021967

Length=1191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463720 pfam12825, DUF3818, Domain of unknown function in PX-p...  506     4e-171
CDD:432813 pfam12828, PXB, PX-associated. This domain is associat...  152     2e-43 


>CDD:463720 pfam12825, DUF3818, Domain of unknown function in PX-proteins 
(DUF3818).  This domain is found on proteins carrying a PX 
domain. Its function is unknown.
Length=333

 Score = 506 bits (1306),  Expect = 4e-171, Method: Composition-based stats.
 Identities = 189/335 (56%), Positives = 244/335 (73%), Gaps = 6/335 (2%)

Query  436  LFSEIREKNTIADLSPQYQKFAEWLRIEVAATLYHVFLAEDNSPEMFAQFKRIHSLVPYT  495
            LF EI+EK +I DLSP YQKF EW RIE+A+TLY +F+  DNS E+FAQ KR+HSL+PY 
Sbjct  1    LFDEIKEKESIEDLSPPYQKFIEWARIELASTLYQLFVGSDNSSELFAQLKRLHSLMPYF  60

Query  496  LLKNVIRIANPAAVMSGVLDLFLAQPFGSRSLLQRIFSMALNDGIKQFQKSIDSLAAKVD  555
            LLK ++RI NP A+M GVLDLFLAQPFG RSLLQR+FS  LND +K  +K I+ L AK+D
Sbjct  61   LLKQILRITNPMAMMKGVLDLFLAQPFGGRSLLQRMFSSILNDDLKHLEKDIEELEAKID  120

Query  556  DPVLTGKLKEFTHADENIKNEIRTEAATEDVDLIVAILRSDLIAPELTPEQVGKVFNAYV  615
             PV+  KLK+F +A E +K+EIR EA  ED+DL+VAILRS  + P L+ EQ+ +V  AY 
Sbjct  121  SPVMCEKLKKFVYAPEEVKDEIREEAEEEDLDLLVAILRSAEL-PRLSKEQLQRVIEAYK  179

Query  616  AWNHAV----DNVDLEMQEGAQWFANMKQLLKLYTRQRDKAMILSIIEEPVTLQLFRDLF  671
            AW  A+       D E  E A+ F+++KQLLKLY+R+RDK  +  + +EP T QL +DL 
Sbjct  180  AWKAAMESEPSADDGETDEDAELFSDLKQLLKLYSRERDKEQMRQLWQEPETAQLLKDLV  239

Query  672  TIFYEPLVRVYKSANVYSSITDFAQFADDAIAVIEKCHRQDVSADPNQTVQAFIDLCERH  731
            TIFYEPLVRVYK+AN+  ++ DF +F DD I ++E    +   +DP  TVQAFIDL +RH
Sbjct  240  TIFYEPLVRVYKAANISDALGDFQKFMDDLIKLVEALRNE-EGSDPFNTVQAFIDLVDRH  298

Query  732  QDNFYKFIHEVHLHDNGLFTSLMGWIEDILEFLRH  766
            + +FYKF+HEVH +D GLF  L+ WIE IL FLR+
Sbjct  299  EQSFYKFVHEVHSNDTGLFDGLIQWIESILNFLRN  333


>CDD:432813 pfam12828, PXB, PX-associated.  This domain is associated with 
the PX domain.
Length=131

 Score = 152 bits (386),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 76/157 (48%), Gaps = 31/157 (20%)

Query  27   PGQILTGKQEHYLKRELIGRQVRNEITELNSPTALHRFGAPFKSEFG-----EVAPVDSE  81
                LT  QEHYLK+EL   Q+  E+  L  P AL  FG PF                S+
Sbjct  1    SSSELTPLQEHYLKKELTHLQLYRELEALKDPDALSLFGYPFAPSKKTADAKSSYAPSSD  60

Query  82   LPILRYIFVHHVRKFPFLDQAREKEFWQDKLQVVSNLHQFGLSAVAGDSLRLTYFFMQFL  141
            LP+LR++F   V  FPFL +A   EFWQDK+Q                          FL
Sbjct  61   LPLLRFLFRRFVLTFPFL-RALPPEFWQDKVQP-------------------------FL  94

Query  142  ESFANKHVSSSEDRLEETKRRKLARKAEKLVELMMVS  178
            ESFA  ++S S DR E TKR+KLA K  KL+EL+  S
Sbjct  95   ESFAEANLSESYDRGELTKRKKLATKLSKLLELLFNS  131



Lambda      K        H        a         alpha
   0.317    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1527484372


Query= TCONS_00021968

Length=705
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463720 pfam12825, DUF3818, Domain of unknown function in PX-p...  504     3e-176


>CDD:463720 pfam12825, DUF3818, Domain of unknown function in PX-proteins 
(DUF3818).  This domain is found on proteins carrying a PX 
domain. Its function is unknown.
Length=333

 Score = 504 bits (1300),  Expect = 3e-176, Method: Composition-based stats.
 Identities = 189/335 (56%), Positives = 244/335 (73%), Gaps = 6/335 (2%)

Query  278  LFSEIREKNTIADLSPQYQKFAEWLRIEVAATLYHVFLAEDNSPEMFAQFKRIHSLVPYT  337
            LF EI+EK +I DLSP YQKF EW RIE+A+TLY +F+  DNS E+FAQ KR+HSL+PY 
Sbjct  1    LFDEIKEKESIEDLSPPYQKFIEWARIELASTLYQLFVGSDNSSELFAQLKRLHSLMPYF  60

Query  338  LLKNVIRIANPAAVMSGVLDLFLAQPFGSRSLLQRIFSMALNDGIKQFQKSIDSLAAKVD  397
            LLK ++RI NP A+M GVLDLFLAQPFG RSLLQR+FS  LND +K  +K I+ L AK+D
Sbjct  61   LLKQILRITNPMAMMKGVLDLFLAQPFGGRSLLQRMFSSILNDDLKHLEKDIEELEAKID  120

Query  398  DPVLTGKLKEFTHADENIKNEIRTEAATEDVDLIVAILRSDLIAPELTPEQVGKVFNAYV  457
             PV+  KLK+F +A E +K+EIR EA  ED+DL+VAILRS  + P L+ EQ+ +V  AY 
Sbjct  121  SPVMCEKLKKFVYAPEEVKDEIREEAEEEDLDLLVAILRSAEL-PRLSKEQLQRVIEAYK  179

Query  458  AWNHAV----DNVDLEMQEGAQWFANMKQLLKLYTRQRDKAMILSIIEEPVTLQLFRDLF  513
            AW  A+       D E  E A+ F+++KQLLKLY+R+RDK  +  + +EP T QL +DL 
Sbjct  180  AWKAAMESEPSADDGETDEDAELFSDLKQLLKLYSRERDKEQMRQLWQEPETAQLLKDLV  239

Query  514  TIFYEPLVRVYKSANVYSSITDFAQFADDAIAVIEKCHRQDVSADPNQTVQAFIDLCERH  573
            TIFYEPLVRVYK+AN+  ++ DF +F DD I ++E    +   +DP  TVQAFIDL +RH
Sbjct  240  TIFYEPLVRVYKAANISDALGDFQKFMDDLIKLVEALRNE-EGSDPFNTVQAFIDLVDRH  298

Query  574  QDNFYKFIHEVHLHDNGLFTSLMGWIEDILEFLRH  608
            + +FYKF+HEVH +D GLF  L+ WIE IL FLR+
Sbjct  299  EQSFYKFVHEVHSNDTGLFDGLIQWIESILNFLRN  333



Lambda      K        H        a         alpha
   0.319    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0836    0.140     1.90     42.6     43.6 

Effective search space used: 902571480


Query= TCONS_00021969

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00026861

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396850 pfam02475, Met_10, Met-10+ like-protein. The methionin...  208     9e-66


>CDD:396850 pfam02475, Met_10, Met-10+ like-protein.  The methionine-10 mutant 
allele of N. crassa codes for a protein of unknown function. 
However, homologous proteins have been found in yeast, 
suggesting this protein may be involved in methionine biosynthesis, 
transport and/or utilisation.
Length=198

 Score = 208 bits (532),  Expect = 9e-66, Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 111/231 (48%), Gaps = 49/231 (21%)

Query  151  GFTQVGHVLHLNLREQYLPYKYLIAEILKDKNKVIRTVINKTEDVGSHSEFRTFPFELLA  210
             F  +G V+ LNLRE+   Y+ +I E + +K KV +TV+ K  +V  + EFRT  +E+LA
Sbjct  2    SFDIIGDVVILNLREELDEYRKVIGEAILEKTKV-KTVLRKVSEV--YGEFRTPRYEVLA  58

Query  211  GDNDLNVVQHEQDCEFRFDYSRVYWNSRLETEHRRLVEKFNKGEMVCDVMAGVGPFAVPA  270
            G  D   +  E  C F+ D ++VYW+ RL  E  R+ +    GE+V D+ AG+GPF++P 
Sbjct  59   GS-DTETIHKENGCRFKVDVAKVYWSPRLIAERERIAKLVEPGEVVVDMFAGIGPFSIPI  117

Query  271  GK--KKIFVWANDLNPHGYEVMQDAIKRNKVEGFVTPFNMDGREFIRWSAKELLETEPVT  328
             K  K   V+A +LNP  Y+ +++ IK NKVE  V P   D RE I              
Sbjct  118  AKHSKARRVYAIELNPESYKYLKENIKLNKVEDVVKPILGDVREVI--------------  163

Query  329  VTIHPKVRRDRKSGNKVEQAPPPHPEEYHRPVFFDHYVMNLPATAIEFLDA  379
                                              D  VMNLP +A EFLD 
Sbjct  164  -----------------------------LEDVADRVVMNLPGSAHEFLDK  185



Lambda      K        H        a         alpha
   0.320    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00026862

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396850 pfam02475, Met_10, Met-10+ like-protein. The methionin...  208     9e-66


>CDD:396850 pfam02475, Met_10, Met-10+ like-protein.  The methionine-10 mutant 
allele of N. crassa codes for a protein of unknown function. 
However, homologous proteins have been found in yeast, 
suggesting this protein may be involved in methionine biosynthesis, 
transport and/or utilisation.
Length=198

 Score = 208 bits (532),  Expect = 9e-66, Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 111/231 (48%), Gaps = 49/231 (21%)

Query  151  GFTQVGHVLHLNLREQYLPYKYLIAEILKDKNKVIRTVINKTEDVGSHSEFRTFPFELLA  210
             F  +G V+ LNLRE+   Y+ +I E + +K KV +TV+ K  +V  + EFRT  +E+LA
Sbjct  2    SFDIIGDVVILNLREELDEYRKVIGEAILEKTKV-KTVLRKVSEV--YGEFRTPRYEVLA  58

Query  211  GDNDLNVVQHEQDCEFRFDYSRVYWNSRLETEHRRLVEKFNKGEMVCDVMAGVGPFAVPA  270
            G  D   +  E  C F+ D ++VYW+ RL  E  R+ +    GE+V D+ AG+GPF++P 
Sbjct  59   GS-DTETIHKENGCRFKVDVAKVYWSPRLIAERERIAKLVEPGEVVVDMFAGIGPFSIPI  117

Query  271  GK--KKIFVWANDLNPHGYEVMQDAIKRNKVEGFVTPFNMDGREFIRWSAKELLETEPVT  328
             K  K   V+A +LNP  Y+ +++ IK NKVE  V P   D RE I              
Sbjct  118  AKHSKARRVYAIELNPESYKYLKENIKLNKVEDVVKPILGDVREVI--------------  163

Query  329  VTIHPKVRRDRKSGNKVEQAPPPHPEEYHRPVFFDHYVMNLPATAIEFLDA  379
                                              D  VMNLP +A EFLD 
Sbjct  164  -----------------------------LEDVADRVVMNLPGSAHEFLDK  185



Lambda      K        H        a         alpha
   0.320    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00021970

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396850 pfam02475, Met_10, Met-10+ like-protein. The methionin...  208     9e-66


>CDD:396850 pfam02475, Met_10, Met-10+ like-protein.  The methionine-10 mutant 
allele of N. crassa codes for a protein of unknown function. 
However, homologous proteins have been found in yeast, 
suggesting this protein may be involved in methionine biosynthesis, 
transport and/or utilisation.
Length=198

 Score = 208 bits (532),  Expect = 9e-66, Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 111/231 (48%), Gaps = 49/231 (21%)

Query  151  GFTQVGHVLHLNLREQYLPYKYLIAEILKDKNKVIRTVINKTEDVGSHSEFRTFPFELLA  210
             F  +G V+ LNLRE+   Y+ +I E + +K KV +TV+ K  +V  + EFRT  +E+LA
Sbjct  2    SFDIIGDVVILNLREELDEYRKVIGEAILEKTKV-KTVLRKVSEV--YGEFRTPRYEVLA  58

Query  211  GDNDLNVVQHEQDCEFRFDYSRVYWNSRLETEHRRLVEKFNKGEMVCDVMAGVGPFAVPA  270
            G  D   +  E  C F+ D ++VYW+ RL  E  R+ +    GE+V D+ AG+GPF++P 
Sbjct  59   GS-DTETIHKENGCRFKVDVAKVYWSPRLIAERERIAKLVEPGEVVVDMFAGIGPFSIPI  117

Query  271  GK--KKIFVWANDLNPHGYEVMQDAIKRNKVEGFVTPFNMDGREFIRWSAKELLETEPVT  328
             K  K   V+A +LNP  Y+ +++ IK NKVE  V P   D RE I              
Sbjct  118  AKHSKARRVYAIELNPESYKYLKENIKLNKVEDVVKPILGDVREVI--------------  163

Query  329  VTIHPKVRRDRKSGNKVEQAPPPHPEEYHRPVFFDHYVMNLPATAIEFLDA  379
                                              D  VMNLP +A EFLD 
Sbjct  164  -----------------------------LEDVADRVVMNLPGSAHEFLDK  185



Lambda      K        H        a         alpha
   0.320    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00021971

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396850 pfam02475, Met_10, Met-10+ like-protein. The methionin...  208     9e-66


>CDD:396850 pfam02475, Met_10, Met-10+ like-protein.  The methionine-10 mutant 
allele of N. crassa codes for a protein of unknown function. 
However, homologous proteins have been found in yeast, 
suggesting this protein may be involved in methionine biosynthesis, 
transport and/or utilisation.
Length=198

 Score = 208 bits (532),  Expect = 9e-66, Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 111/231 (48%), Gaps = 49/231 (21%)

Query  151  GFTQVGHVLHLNLREQYLPYKYLIAEILKDKNKVIRTVINKTEDVGSHSEFRTFPFELLA  210
             F  +G V+ LNLRE+   Y+ +I E + +K KV +TV+ K  +V  + EFRT  +E+LA
Sbjct  2    SFDIIGDVVILNLREELDEYRKVIGEAILEKTKV-KTVLRKVSEV--YGEFRTPRYEVLA  58

Query  211  GDNDLNVVQHEQDCEFRFDYSRVYWNSRLETEHRRLVEKFNKGEMVCDVMAGVGPFAVPA  270
            G  D   +  E  C F+ D ++VYW+ RL  E  R+ +    GE+V D+ AG+GPF++P 
Sbjct  59   GS-DTETIHKENGCRFKVDVAKVYWSPRLIAERERIAKLVEPGEVVVDMFAGIGPFSIPI  117

Query  271  GK--KKIFVWANDLNPHGYEVMQDAIKRNKVEGFVTPFNMDGREFIRWSAKELLETEPVT  328
             K  K   V+A +LNP  Y+ +++ IK NKVE  V P   D RE I              
Sbjct  118  AKHSKARRVYAIELNPESYKYLKENIKLNKVEDVVKPILGDVREVI--------------  163

Query  329  VTIHPKVRRDRKSGNKVEQAPPPHPEEYHRPVFFDHYVMNLPATAIEFLDA  379
                                              D  VMNLP +A EFLD 
Sbjct  164  -----------------------------LEDVADRVVMNLPGSAHEFLDK  185



Lambda      K        H        a         alpha
   0.320    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00026863

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396850 pfam02475, Met_10, Met-10+ like-protein. The methionin...  208     9e-66


>CDD:396850 pfam02475, Met_10, Met-10+ like-protein.  The methionine-10 mutant 
allele of N. crassa codes for a protein of unknown function. 
However, homologous proteins have been found in yeast, 
suggesting this protein may be involved in methionine biosynthesis, 
transport and/or utilisation.
Length=198

 Score = 208 bits (532),  Expect = 9e-66, Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 111/231 (48%), Gaps = 49/231 (21%)

Query  151  GFTQVGHVLHLNLREQYLPYKYLIAEILKDKNKVIRTVINKTEDVGSHSEFRTFPFELLA  210
             F  +G V+ LNLRE+   Y+ +I E + +K KV +TV+ K  +V  + EFRT  +E+LA
Sbjct  2    SFDIIGDVVILNLREELDEYRKVIGEAILEKTKV-KTVLRKVSEV--YGEFRTPRYEVLA  58

Query  211  GDNDLNVVQHEQDCEFRFDYSRVYWNSRLETEHRRLVEKFNKGEMVCDVMAGVGPFAVPA  270
            G  D   +  E  C F+ D ++VYW+ RL  E  R+ +    GE+V D+ AG+GPF++P 
Sbjct  59   GS-DTETIHKENGCRFKVDVAKVYWSPRLIAERERIAKLVEPGEVVVDMFAGIGPFSIPI  117

Query  271  GK--KKIFVWANDLNPHGYEVMQDAIKRNKVEGFVTPFNMDGREFIRWSAKELLETEPVT  328
             K  K   V+A +LNP  Y+ +++ IK NKVE  V P   D RE I              
Sbjct  118  AKHSKARRVYAIELNPESYKYLKENIKLNKVEDVVKPILGDVREVI--------------  163

Query  329  VTIHPKVRRDRKSGNKVEQAPPPHPEEYHRPVFFDHYVMNLPATAIEFLDA  379
                                              D  VMNLP +A EFLD 
Sbjct  164  -----------------------------LEDVADRVVMNLPGSAHEFLDK  185



Lambda      K        H        a         alpha
   0.320    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00026865

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  76.4    5e-16


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 76.4 bits (188),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 99/268 (37%), Gaps = 35/268 (13%)

Query  72   YFESIHPVFPIL-----MEDAFRQSYRTRQGLSPLLLSAVYVCALKFVDIGPASQSVRRP  126
            +F++ HP FPIL     + D F          SPLLL A+      F +   A  S    
Sbjct  4    FFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSSLT  63

Query  127  DAGRLEST----ALRLLIESL--PHATISTIQAGLLLME-----KSTIATH-ALNAQLVT  174
            D           AL L+ E    P +++  +QA LLL+E           H   +   + 
Sbjct  64   DEAADGIHFFLRALILIHEDFSSPSSSLWILQA-LLLLELYELGTGDRKLHWRYHGLAIR  122

Query  175  AGFELGLHQDCS----GWNMETWEKGLRKRLAWALYMQDKWSALIHGRPSHIFAFNWTV-  229
                LGLH+D S     W +   E  LR+RL WA +  D+  +LI GRP  +   +  + 
Sbjct  123  LARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDIDLP  182

Query  230  ---KDLVEQDFTEAFHTDNAQQDDADVGHGPLFFCHMVALTTILSDILDRFYTL-QAIEE  285
                D    +   A                P  F  ++ L+ ILS IL    ++   +++
Sbjct  183  LPCDDDDLWESDSADEVTLPLISLESKSIKPPLF--LIKLSKILSKILGSLLSIRSTLDQ  240

Query  286  FKAAGANRTRMILERAKPAQIRLKEWFA  313
                        LERA      L  W  
Sbjct  241  RDLQLKLSWVRELERA------LDNWRK  262



Lambda      K        H        a         alpha
   0.320    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684357832


Query= TCONS_00021972

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  76.4    5e-16


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 76.4 bits (188),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 99/268 (37%), Gaps = 35/268 (13%)

Query  72   YFESIHPVFPIL-----MEDAFRQSYRTRQGLSPLLLSAVYVCALKFVDIGPASQSVRRP  126
            +F++ HP FPIL     + D F          SPLLL A+      F +   A  S    
Sbjct  4    FFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSSLT  63

Query  127  DAGRLEST----ALRLLIESL--PHATISTIQAGLLLME-----KSTIATH-ALNAQLVT  174
            D           AL L+ E    P +++  +QA LLL+E           H   +   + 
Sbjct  64   DEAADGIHFFLRALILIHEDFSSPSSSLWILQA-LLLLELYELGTGDRKLHWRYHGLAIR  122

Query  175  AGFELGLHQDCS----GWNMETWEKGLRKRLAWALYMQDKWSALIHGRPSHIFAFNWTV-  229
                LGLH+D S     W +   E  LR+RL WA +  D+  +LI GRP  +   +  + 
Sbjct  123  LARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDIDLP  182

Query  230  ---KDLVEQDFTEAFHTDNAQQDDADVGHGPLFFCHMVALTTILSDILDRFYTL-QAIEE  285
                D    +   A                P  F  ++ L+ ILS IL    ++   +++
Sbjct  183  LPCDDDDLWESDSADEVTLPLISLESKSIKPPLF--LIKLSKILSKILGSLLSIRSTLDQ  240

Query  286  FKAAGANRTRMILERAKPAQIRLKEWFA  313
                        LERA      L  W  
Sbjct  241  RDLQLKLSWVRELERA------LDNWRK  262



Lambda      K        H        a         alpha
   0.320    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684357832


Query= TCONS_00021973

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  78.3    1e-16


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 78.3 bits (193),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 70/271 (26%), Positives = 102/271 (38%), Gaps = 41/271 (15%)

Query  267  YFESIHPVFPIL-----MEDAFRQSYRTRQGLSPLLLSAVYVCALKFVDIGPASQSVRRP  321
            +F++ HP FPIL     + D F          SPLLL A+      F +   A  S    
Sbjct  4    FFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSSLT  63

Query  322  DAGRLEST----ALRLLIESL--PHATISTIQAGLLLM---EKSTIAT------HALNAQ  366
            D           AL L+ E    P +++  +QA LLL+   E  T         H L  +
Sbjct  64   DEAADGIHFFLRALILIHEDFSSPSSSLWILQA-LLLLELYELGTGDRKLHWRYHGLAIR  122

Query  367  LVTAGFELGLHQDCS----GWNMETWEKGLRKRLAWALYMQDKWSALIHGRPSHIFAFNW  422
            L  +   LGLH+D S     W +   E  LR+RL WA +  D+  +LI GRP  +   + 
Sbjct  123  LARS---LGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDI  179

Query  423  TV----KDLVEQDFTEAFHTDNAQQDDADVGHGPLFFCHMVALTTILSDILDRFYTL-QA  477
             +     D    +   A                P  F  ++ L+ ILS IL    ++   
Sbjct  180  DLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLF--LIKLSKILSKILGSLLSIRST  237

Query  478  IEEFKAAGANRTRMILERAKPAQIRLKEWFA  508
            +++            LERA      L  W  
Sbjct  238  LDQRDLQLKLSWVRELERA------LDNWRK  262



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 937117888


Query= TCONS_00022077

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  83.4    4e-23


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 83.4 bits (207),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 26/71 (37%), Positives = 46/71 (65%), Gaps = 1/71 (1%)

Query  4   LFIGGLAWHTTDDALRQGFEPYGVVEEAIVVKDRDTNRSRGFGFVRFSSDTEADAAMDAM  63
           LF+G L   TT++ L+  F  +G ++   +V+D +T RS+GF FV F  + +A+ A++A+
Sbjct  1   LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  64  NNQEFDGRTIR  74
           N +E  GR ++
Sbjct  60  NGKELGGRELK  70



Lambda      K        H        a         alpha
   0.315    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00026913

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  83.4    4e-23


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 83.4 bits (207),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 26/71 (37%), Positives = 46/71 (65%), Gaps = 1/71 (1%)

Query  4   LFIGGLAWHTTDDALRQGFEPYGVVEEAIVVKDRDTNRSRGFGFVRFSSDTEADAAMDAM  63
           LF+G L   TT++ L+  F  +G ++   +V+D +T RS+GF FV F  + +A+ A++A+
Sbjct  1   LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  64  NNQEFDGRTIR  74
           N +E  GR ++
Sbjct  60  NGKELGGRELK  70



Lambda      K        H        a         alpha
   0.315    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00022078

Length=118
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  82.7    8e-23


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 82.7 bits (205),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 26/71 (37%), Positives = 46/71 (65%), Gaps = 1/71 (1%)

Query  4   LFIGGLAWHTTDDALRQGFEPYGVVEEAIVVKDRDTNRSRGFGFVRFSSDTEADAAMDAM  63
           LF+G L   TT++ L+  F  +G ++   +V+D +T RS+GF FV F  + +A+ A++A+
Sbjct  1   LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  64  NNQEFDGRTIR  74
           N +E  GR ++
Sbjct  60  NGKELGGRELK  70



Lambda      K        H        a         alpha
   0.315    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00021975

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429271 pfam07063, DUF1338, Domain of unknown function (DUF133...  418     4e-145


>CDD:429271 pfam07063, DUF1338, Domain of unknown function (DUF1338).  This 
domain is found in a variety of bacterial and fungal hypothetical 
proteins of unknown function. The structure of this 
domain has been solved by structural genomics. The structure 
implies a zinc-binding function, so it is a putative metal 
hydrolase (information derived from TOPSAN for Structure 3iuz).
Length=320

 Score = 418 bits (1076),  Expect = 4e-145, Method: Composition-based stats.
 Identities = 182/406 (45%), Positives = 214/406 (53%), Gaps = 90/406 (22%)

Query  75   LRARFCHALSEMYKAEVPLYGDLVDLVWQADAEALQTSQRQHGNTTPIINPDDILPARNR  134
            LRA F  ALS MY   VPLYG LV+LV   +   L                         
Sbjct  2    LRAAFASALSAMYLERVPLYGTLVELVAAVNGTVLAADP-------------------LV  42

Query  135  VERHGAIRLG--TARELSTIRRMFAVMGMLPVGYYDLSVAGFPMHATAFRPRTREALARH  192
            VE HGAIR G  T   L+++ R+FAV+G  PVGYYDL     P H TAFRP   E LAR+
Sbjct  43   VEDHGAIRTGGVTPLGLASLARIFAVLGYHPVGYYDLPAKKLPAHWTAFRPPDAEDLARN  102

Query  193  PFRVFTTVLRMELLS-ERTRALAERALAQREIFTPRLLELLELAETNGSLSCKECDEFIA  251
            P RVFT+ LR++LLS E  RA+A+  LA R+IFTPRLLELL+ AE +G L+  + + F+A
Sbjct  103  PPRVFTSELRVDLLSDEAQRAIAKYVLASRDIFTPRLLELLDQAERDGGLTADDAEAFVA  162

Query  252  EGLETFRWHSRAAVTLEEYRILKAEHPLVADIVSFPSCHINHLTPRTIDIDLVQRMMRER  311
            E L TF W   A  TL +Y +L AE    A I+ F   HINHLTPR +DID VQR M ER
Sbjct  163  EALGTFPWQHEAP-TLADYELLLAESEYAAWIL-FHGYHINHLTPRVLDIDAVQRFMEER  220

Query  312  GMPVKERIEGPPCRVNPILLRQTSFKALEETVYFRDAGGEYVRGSHTARFGEVEQRGYAL  371
            G+P+K+RIEGPP      LLRQTSF+ALEE V F DA G  V GSHTARFGE EQRG AL
Sbjct  221  GIPMKDRIEGPPRVSPDGLLRQTSFRALEEPVEFADADG--VTGSHTARFGEFEQRGAAL  278

Query  372  TRKGRRLYDQILARVNREAAGLEPVEYERILRKCFEEFPDDLVQLQTQKLAFFCYRVAPY  431
            T KGR LYD++LA                                               
Sbjct  279  TPKGRALYDELLAEAIDSG-----------------------------------------  297

Query  432  ALQRKYQGVESVSLAQLLKDNVLDYEPITYEDFLPLSAGGIFNSNL  477
                                   + EPI YEDFLP +A GIF S L
Sbjct  298  -----------------------EAEPILYEDFLPGNAAGIFESTL  320



Lambda      K        H        a         alpha
   0.323    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00021976

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429271 pfam07063, DUF1338, Domain of unknown function (DUF133...  418     4e-145


>CDD:429271 pfam07063, DUF1338, Domain of unknown function (DUF1338).  This 
domain is found in a variety of bacterial and fungal hypothetical 
proteins of unknown function. The structure of this 
domain has been solved by structural genomics. The structure 
implies a zinc-binding function, so it is a putative metal 
hydrolase (information derived from TOPSAN for Structure 3iuz).
Length=320

 Score = 418 bits (1076),  Expect = 4e-145, Method: Composition-based stats.
 Identities = 182/406 (45%), Positives = 214/406 (53%), Gaps = 90/406 (22%)

Query  75   LRARFCHALSEMYKAEVPLYGDLVDLVWQADAEALQTSQRQHGNTTPIINPDDILPARNR  134
            LRA F  ALS MY   VPLYG LV+LV   +   L                         
Sbjct  2    LRAAFASALSAMYLERVPLYGTLVELVAAVNGTVLAADP-------------------LV  42

Query  135  VERHGAIRLG--TARELSTIRRMFAVMGMLPVGYYDLSVAGFPMHATAFRPRTREALARH  192
            VE HGAIR G  T   L+++ R+FAV+G  PVGYYDL     P H TAFRP   E LAR+
Sbjct  43   VEDHGAIRTGGVTPLGLASLARIFAVLGYHPVGYYDLPAKKLPAHWTAFRPPDAEDLARN  102

Query  193  PFRVFTTVLRMELLS-ERTRALAERALAQREIFTPRLLELLELAETNGSLSCKECDEFIA  251
            P RVFT+ LR++LLS E  RA+A+  LA R+IFTPRLLELL+ AE +G L+  + + F+A
Sbjct  103  PPRVFTSELRVDLLSDEAQRAIAKYVLASRDIFTPRLLELLDQAERDGGLTADDAEAFVA  162

Query  252  EGLETFRWHSRAAVTLEEYRILKAEHPLVADIVSFPSCHINHLTPRTIDIDLVQRMMRER  311
            E L TF W   A  TL +Y +L AE    A I+ F   HINHLTPR +DID VQR M ER
Sbjct  163  EALGTFPWQHEAP-TLADYELLLAESEYAAWIL-FHGYHINHLTPRVLDIDAVQRFMEER  220

Query  312  GMPVKERIEGPPCRVNPILLRQTSFKALEETVYFRDAGGEYVRGSHTARFGEVEQRGYAL  371
            G+P+K+RIEGPP      LLRQTSF+ALEE V F DA G  V GSHTARFGE EQRG AL
Sbjct  221  GIPMKDRIEGPPRVSPDGLLRQTSFRALEEPVEFADADG--VTGSHTARFGEFEQRGAAL  278

Query  372  TRKGRRLYDQILARVNREAAGLEPVEYERILRKCFEEFPDDLVQLQTQKLAFFCYRVAPY  431
            T KGR LYD++LA                                               
Sbjct  279  TPKGRALYDELLAEAIDSG-----------------------------------------  297

Query  432  ALQRKYQGVESVSLAQLLKDNVLDYEPITYEDFLPLSAGGIFNSNL  477
                                   + EPI YEDFLP +A GIF S L
Sbjct  298  -----------------------EAEPILYEDFLPGNAAGIFESTL  320



Lambda      K        H        a         alpha
   0.323    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00026866

Length=629
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  146     7e-42
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  102     3e-25


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 146 bits (370),  Expect = 7e-42, Method: Composition-based stats.
 Identities = 54/147 (37%), Positives = 75/147 (51%), Gaps = 11/147 (7%)

Query  482  PFSRGSVTLADASMNTPPVIDPQWLVDPTDVDLAIQSFKRQRQVWEVLVRMGIADAREAY  541
            P SRG VTL+ +     PVIDP +L DP D+     + +  R++       G+    E  
Sbjct  1    PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILA---AAGLVLGVELT  57

Query  542  PG-------EHVQTDSQIREYLAKSVIPVFHVAGSCKMGRKDDPLAVLDNTARVFGVQNL  594
            PG         V +D ++  Y+  +    +H  G+C+MG   D  AV+D   RV GV NL
Sbjct  58   PGPVPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPDD-AVVDPDLRVHGVDNL  116

Query  595  RVVDASSFPFITPGHPQAVVYALAEKI  621
            RVVDAS FP    G+P   +YALAE+ 
Sbjct  117  RVVDASVFPSSPSGNPTLTIYALAERA  143


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 102 bits (256),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 90/253 (36%), Gaps = 56/253 (22%)

Query  122  AGNRTAHYARGKTLGGSSARNFMLYHRSTADSMQRWADEASDESYTFDRMLPYFKKSCHY  181
               R      G T+GG S+ N+    R+ A  +  WA E   E + +D  LPY  K    
Sbjct  14   VNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE--  71

Query  182  TPPDQSLYVNSTNTQTPDAFEPSGGPLQVSFGNSVDVFGT----WAQKAFTAVGLEEIDG  237
                  L V             +   ++ S  N   +       +  +A           
Sbjct  72   ----GPLGV-------------TTKGIEESPLNQALLKAAEELGYPVEAVP-------RN  107

Query  238  LNSGRLLG-AAYGTSTINPKNAQRSSSEASFLQEAIAGGSPPTIYINAMAQKILFDEN-K  295
             N     G    G          + S+  ++L+ A+       I   A A+KI+      
Sbjct  108  SNGCHYCGFCGLGC-----PTGAKQSTARTWLRPALERNL--RILTGAKAEKIIILGRGG  160

Query  296  AATGVQVSTAGTFGTPPVSYKLNARKEVIISAGAFQSPQLLMVSGVGACDQLSKFGIDCI  355
             A GV+    G  G   +     A KEV+++AGA  +P LL+ SG+G             
Sbjct  161  RAVGVEARDGGG-GIKRLIT---AAKEVVVAAGALNTPPLLLRSGLGK------------  204

Query  356  HDLPGVGQNLQDH  368
            +  P VG+NLQ H
Sbjct  205  NPHP-VGKNLQLH  216



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790487440


Query= TCONS_00021977

Length=629
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  146     7e-42
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  102     3e-25


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 146 bits (370),  Expect = 7e-42, Method: Composition-based stats.
 Identities = 54/147 (37%), Positives = 75/147 (51%), Gaps = 11/147 (7%)

Query  482  PFSRGSVTLADASMNTPPVIDPQWLVDPTDVDLAIQSFKRQRQVWEVLVRMGIADAREAY  541
            P SRG VTL+ +     PVIDP +L DP D+     + +  R++       G+    E  
Sbjct  1    PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILA---AAGLVLGVELT  57

Query  542  PG-------EHVQTDSQIREYLAKSVIPVFHVAGSCKMGRKDDPLAVLDNTARVFGVQNL  594
            PG         V +D ++  Y+  +    +H  G+C+MG   D  AV+D   RV GV NL
Sbjct  58   PGPVPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPDD-AVVDPDLRVHGVDNL  116

Query  595  RVVDASSFPFITPGHPQAVVYALAEKI  621
            RVVDAS FP    G+P   +YALAE+ 
Sbjct  117  RVVDASVFPSSPSGNPTLTIYALAERA  143


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 102 bits (256),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 90/253 (36%), Gaps = 56/253 (22%)

Query  122  AGNRTAHYARGKTLGGSSARNFMLYHRSTADSMQRWADEASDESYTFDRMLPYFKKSCHY  181
               R      G T+GG S+ N+    R+ A  +  WA E   E + +D  LPY  K    
Sbjct  14   VNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE--  71

Query  182  TPPDQSLYVNSTNTQTPDAFEPSGGPLQVSFGNSVDVFGT----WAQKAFTAVGLEEIDG  237
                  L V             +   ++ S  N   +       +  +A           
Sbjct  72   ----GPLGV-------------TTKGIEESPLNQALLKAAEELGYPVEAVP-------RN  107

Query  238  LNSGRLLG-AAYGTSTINPKNAQRSSSEASFLQEAIAGGSPPTIYINAMAQKILFDEN-K  295
             N     G    G          + S+  ++L+ A+       I   A A+KI+      
Sbjct  108  SNGCHYCGFCGLGC-----PTGAKQSTARTWLRPALERNL--RILTGAKAEKIIILGRGG  160

Query  296  AATGVQVSTAGTFGTPPVSYKLNARKEVIISAGAFQSPQLLMVSGVGACDQLSKFGIDCI  355
             A GV+    G  G   +     A KEV+++AGA  +P LL+ SG+G             
Sbjct  161  RAVGVEARDGGG-GIKRLIT---AAKEVVVAAGALNTPPLLLRSGLGK------------  204

Query  356  HDLPGVGQNLQDH  368
            +  P VG+NLQ H
Sbjct  205  NPHP-VGKNLQLH  216



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790487440


Query= TCONS_00021978

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e            130     9e-40


>CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e.  
Length=133

 Score = 130 bits (330),  Expect = 9e-40, Method: Composition-based stats.
 Identities = 49/86 (57%), Positives = 57/86 (66%), Gaps = 4/86 (5%)

Query  115  MGLRYKKANVTHPELGVTVQLPILGVKKNPQNPLYTQLGVLTKGTIIEVNVSELGLVTTS  174
              LR KKANVTHP  GVT +L ILGV  NP NP Y +  +LTKG IIE +V  LGLV   
Sbjct  52   RALRLKKANVTHPSEGVTKKLKILGVVYNPSNPEYVRRNILTKGAIIETDVGPLGLVFQG  111

Query  175  GKVVWGKYAQITNTPENDGTVNAVLL  200
            GK+    YA++T+ P  DG VNAVLL
Sbjct  112  GKL----YARVTSRPGQDGCVNAVLL  133



Lambda      K        H        a         alpha
   0.313    0.130    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00021979

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e            130     1e-38


>CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e.  
Length=133

 Score = 130 bits (329),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 63/226 (28%), Positives = 79/226 (35%), Gaps = 94/226 (42%)

Query  34   KQSQDAQNLRGLRAKLYQQKRHAEKIQMRKRIKAQEEKNVKSSAPDEPSKTPLPQYLLDR  93
            +Q +  + L G +AKL+++KR  E                                    
Sbjct  1    RQGRHKRKLTGGKAKLFRKKRKYEL-----------------------------------  25

Query  94   SQATNAKALSSAIKDKRAEKAAKFAVPLPKVKGISEEEMFKVVNTGKKTHKKSWKRMITK  153
                            R     K             EE  KVV       K         
Sbjct  26   ---------------GRQPANTKLG-----------EERVKVVRVRGGNRKV--------  51

Query  154  PTFVGSDFTRRPVKYERFIRPMGLRYKKANVTHPELGVTVQLPILGVKKNPQNPLYTQLG  213
                                   LR KKANVTHP  GVT +L ILGV  NP NP Y +  
Sbjct  52   ---------------------RALRLKKANVTHPSEGVTKKLKILGVVYNPSNPEYVRRN  90

Query  214  VLTKGTIIEVNVSELGLVTTSGKVVWGKYAQITNTPENDGTVNAYV  259
            +LTKG IIE +V  LGLV   GK+    YA++T+ P  DG VNA +
Sbjct  91   ILTKGAIIETDVGPLGLVFQGGKL----YARVTSRPGQDGCVNAVL  132



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00026867

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e            131     2e-39


>CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e.  
Length=133

 Score = 131 bits (333),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 81/227 (36%), Gaps = 94/227 (41%)

Query  34   KQSQDAQNLRGLRAKLYQQKRHAEKIQMRKRIKAQEEKNVKSSAPDEPSKTPLPQYLLDR  93
            +Q +  + L G +AKL+++KR  E                                    
Sbjct  1    RQGRHKRKLTGGKAKLFRKKRKYEL-----------------------------------  25

Query  94   SQATNAKALSSAIKDKRAEKAAKFAVPLPKVKGISEEEMFKVVNTGKKTHKKSWKRMITK  153
                            R     K             EE  KVV       K         
Sbjct  26   ---------------GRQPANTKLG-----------EERVKVVRVRGGNRKV--------  51

Query  154  PTFVGSDFTRRPVKYERFIRPMGLRYKKANVTHPELGVTVQLPILGVKKNPQNPLYTQLG  213
                                   LR KKANVTHP  GVT +L ILGV  NP NP Y +  
Sbjct  52   ---------------------RALRLKKANVTHPSEGVTKKLKILGVVYNPSNPEYVRRN  90

Query  214  VLTKGTIIEVNVSELGLVTTSGKVVWGKYAQITNTPENDGTVNAVLL  260
            +LTKG IIE +V  LGLV   GK+    YA++T+ P  DG VNAVLL
Sbjct  91   ILTKGAIIETDVGPLGLVFQGGKL----YARVTSRPGQDGCVNAVLL  133



Lambda      K        H        a         alpha
   0.313    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00021980

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e            122     2e-35


>CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e.  
Length=133

 Score = 122 bits (308),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 61/226 (27%), Positives = 77/226 (34%), Gaps = 94/226 (42%)

Query  34   KQSQDAQNLRGLRAKLYQQKRHAEKIQMRKRIKAQEEKNVKSSAPDEPSKTPLPQYLLDR  93
            +Q +  + L G +AKL+++KR  E                                    
Sbjct  1    RQGRHKRKLTGGKAKLFRKKRKYEL-----------------------------------  25

Query  94   SQATNAKALSSAIKDKRAEKAAKFAVPLPKVKGISEEEMFKVVNTGKKTHKKSWKRMITK  153
                            R     K             EE  KVV       K         
Sbjct  26   ---------------GRQPANTKLG-----------EERVKVVRVRGGNRKV--------  51

Query  154  PTFVGSDFTRRPVKYERFIRPMGLRYKKANVTQYELGVTVQLPILGVKKNPQNPLYTQLG  213
                                   LR KKANVT    GVT +L ILGV  NP NP Y +  
Sbjct  52   ---------------------RALRLKKANVTHPSEGVTKKLKILGVVYNPSNPEYVRRN  90

Query  214  VLTKGTIIEVNVSELGLVTTSGKVVWGKYAQITNTPENDGTVNAYV  259
            +LTKG IIE +V  LGLV   GK+    YA++T+ P  DG VNA +
Sbjct  91   ILTKGAIIETDVGPLGLVFQGGKL----YARVTSRPGQDGCVNAVL  132



Lambda      K        H        a         alpha
   0.316    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00021981

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e            130     9e-40


>CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e.  
Length=133

 Score = 130 bits (330),  Expect = 9e-40, Method: Composition-based stats.
 Identities = 49/86 (57%), Positives = 57/86 (66%), Gaps = 4/86 (5%)

Query  115  MGLRYKKANVTHPELGVTVQLPILGVKKNPQNPLYTQLGVLTKGTIIEVNVSELGLVTTS  174
              LR KKANVTHP  GVT +L ILGV  NP NP Y +  +LTKG IIE +V  LGLV   
Sbjct  52   RALRLKKANVTHPSEGVTKKLKILGVVYNPSNPEYVRRNILTKGAIIETDVGPLGLVFQG  111

Query  175  GKVVWGKYAQITNTPENDGTVNAVLL  200
            GK+    YA++T+ P  DG VNAVLL
Sbjct  112  GKL----YARVTSRPGQDGCVNAVLL  133



Lambda      K        H        a         alpha
   0.313    0.130    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00021983

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e            129     8e-39


>CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e.  
Length=133

 Score = 129 bits (326),  Expect = 8e-39, Method: Composition-based stats.
 Identities = 46/85 (54%), Positives = 55/85 (65%), Gaps = 4/85 (5%)

Query  115  MGLRYKKANVTHPELGVTVQLPILGVKKNPQNPLYTQLGVLTKGTIIEVNVSELGLVTTS  174
              LR KKANVTHP  GVT +L ILGV  NP NP Y +  +LTKG IIE +V  LGLV   
Sbjct  52   RALRLKKANVTHPSEGVTKKLKILGVVYNPSNPEYVRRNILTKGAIIETDVGPLGLVFQG  111

Query  175  GKVVWGKYAQITNTPENDGTVNAYV  199
            GK+    YA++T+ P  DG VNA +
Sbjct  112  GKL----YARVTSRPGQDGCVNAVL  132



Lambda      K        H        a         alpha
   0.316    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00021982

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e            130     2e-38


>CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e.  
Length=133

 Score = 130 bits (330),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 63/226 (28%), Positives = 79/226 (35%), Gaps = 94/226 (42%)

Query  56   KQSQDAQNLRGLRAKLYQQKRHAEKIQMRKRIKAQEEKNVKSSAPDEPSKTPLPQYLLDR  115
            +Q +  + L G +AKL+++KR  E                                    
Sbjct  1    RQGRHKRKLTGGKAKLFRKKRKYEL-----------------------------------  25

Query  116  SQATNAKALSSAIKDKRAEKAAKFAVPLPKVKGISEEEMFKVVNTGKKTHKKSWKRMITK  175
                            R     K             EE  KVV       K         
Sbjct  26   ---------------GRQPANTKLG-----------EERVKVVRVRGGNRKV--------  51

Query  176  PTFVGSDFTRRPVKYERFIRPMGLRYKKANVTHPELGVTVQLPILGVKKNPQNPLYTQLG  235
                                   LR KKANVTHP  GVT +L ILGV  NP NP Y +  
Sbjct  52   ---------------------RALRLKKANVTHPSEGVTKKLKILGVVYNPSNPEYVRRN  90

Query  236  VLTKGTIIEVNVSELGLVTTSGKVVWGKYAQITNTPENDGTVNAYV  281
            +LTKG IIE +V  LGLV   GK+    YA++T+ P  DG VNA +
Sbjct  91   ILTKGAIIETDVGPLGLVFQGGKL----YARVTSRPGQDGCVNAVL  132



Lambda      K        H        a         alpha
   0.316    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00021984

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e            132     2e-39


>CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e.  
Length=133

 Score = 132 bits (334),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 81/227 (36%), Gaps = 94/227 (41%)

Query  56   KQSQDAQNLRGLRAKLYQQKRHAEKIQMRKRIKAQEEKNVKSSAPDEPSKTPLPQYLLDR  115
            +Q +  + L G +AKL+++KR  E                                    
Sbjct  1    RQGRHKRKLTGGKAKLFRKKRKYEL-----------------------------------  25

Query  116  SQATNAKALSSAIKDKRAEKAAKFAVPLPKVKGISEEEMFKVVNTGKKTHKKSWKRMITK  175
                            R     K             EE  KVV       K         
Sbjct  26   ---------------GRQPANTKLG-----------EERVKVVRVRGGNRKV--------  51

Query  176  PTFVGSDFTRRPVKYERFIRPMGLRYKKANVTHPELGVTVQLPILGVKKNPQNPLYTQLG  235
                                   LR KKANVTHP  GVT +L ILGV  NP NP Y +  
Sbjct  52   ---------------------RALRLKKANVTHPSEGVTKKLKILGVVYNPSNPEYVRRN  90

Query  236  VLTKGTIIEVNVSELGLVTTSGKVVWGKYAQITNTPENDGTVNAVLL  282
            +LTKG IIE +V  LGLV   GK+    YA++T+ P  DG VNAVLL
Sbjct  91   ILTKGAIIETDVGPLGLVFQGGKL----YARVTSRPGQDGCVNAVLL  133



Lambda      K        H        a         alpha
   0.313    0.129    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00026868

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e            130     9e-40


>CDD:460110 pfam01201, Ribosomal_S8e, Ribosomal protein S8e.  
Length=133

 Score = 130 bits (330),  Expect = 9e-40, Method: Composition-based stats.
 Identities = 49/86 (57%), Positives = 57/86 (66%), Gaps = 4/86 (5%)

Query  115  MGLRYKKANVTHPELGVTVQLPILGVKKNPQNPLYTQLGVLTKGTIIEVNVSELGLVTTS  174
              LR KKANVTHP  GVT +L ILGV  NP NP Y +  +LTKG IIE +V  LGLV   
Sbjct  52   RALRLKKANVTHPSEGVTKKLKILGVVYNPSNPEYVRRNILTKGAIIETDVGPLGLVFQG  111

Query  175  GKVVWGKYAQITNTPENDGTVNAVLL  200
            GK+    YA++T+ P  DG VNAVLL
Sbjct  112  GKL----YARVTSRPGQDGCVNAVLL  133



Lambda      K        H        a         alpha
   0.313    0.130    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00021985

Length=615


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 781585844


Query= TCONS_00021986

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00021987

Length=615


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 781585844


Query= TCONS_00021988

Length=408


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00021989

Length=615


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 781585844


Query= TCONS_00026869

Length=615


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 781585844


Query= TCONS_00021990

Length=533


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00026871

Length=601


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 760663852


Query= TCONS_00021991

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00026872

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00021992

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460252 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hy...  186     5e-60


>CDD:460252 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase 
family.  This family consists of fumarylacetoacetate (FAA) 
hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also 
includes HHDD isomerase/OPET decarboxylase from E. coli strain 
W. FAA is the last enzyme in the tyrosine catabolic pathway, 
it hydrolyzes fumarylacetoacetate into fumarate and acetoacetate 
which then join the citric acid cycle. Mutations 
in FAA cause type I tyrosinemia in humans this is an inherited 
disorder mainly affecting the liver leading to liver cirrhosis, 
hepatocellular carcinoma, renal tubular damages and neurologic 
crises amongst other symptoms. The enzymatic defect 
causes the toxic accumulation of phenylalanine/tyrosine catabolites. 
The E. coli W enzyme HHDD isomerase/OPET decarboxylase 
contains two copies of this domain and functions in fourth 
and fifth steps of the homoprotocatechuate pathway; here 
it decarboxylates OPET to HHDD and isomerizes this to OHED. 
The final products of this pathway are pyruvic acid and succinic 
semialdehyde. This family also includes various hydratases 
and 4-oxalocrotonate decarboxylases which are involved 
in the bacterial meta-cleavage pathways for degradation of 
aromatic compounds. 2-hydroxypentadienoic acid hydratase encoded 
by mhpD in E. coli is involved in the phenylpropionic acid 
pathway of E. coli and catalyzes the conversion of 2-hydroxy 
pentadienoate to 4-hydroxy-2-keto-pentanoate and uses a 
Mn2+ co-factor. OHED hydratase encoded by hpcG in E. coli is 
involved in the homoprotocatechuic acid (HPC) catabolism. 
XylI in P. putida is a 4-Oxalocrotonate decarboxylase.
Length=210

 Score = 186 bits (475),  Expect = 5e-60, Method: Composition-based stats.
 Identities = 80/207 (39%), Positives = 116/207 (56%), Gaps = 20/207 (10%)

Query  55   ICIGRNYADHITELNNTKP----KQPF-FFLKPPSSILLPREGPVLLPKGV-SLHYEVEL  108
            +C+G NYA+H  E    +P      P   F+KPPSS++ P + P++ P GV  L YE EL
Sbjct  1    VCVGLNYAEHAREAGKAEPVPDFPIPLVLFVKPPSSLIGPGD-PIVRPAGVTKLDYEAEL  59

Query  109  ALVMGKTVRDLDPNDEKGALDAIRSYLLAIDMTGRNVQDEAKKKGLPWSIAKGFDTFLPI  168
            A+V+G+  RD+ P +   ALD I  Y LA D++ R++Q       L W   K FD F P+
Sbjct  60   AVVIGRPARDVSPEE---ALDYIFGYTLANDVSARDLQRREMP--LQWFRGKSFDGFTPL  114

Query  169  SEEI-PKARIPDPHNAFLRLSVGSQLRQADSTGLMLYRIPRQLAEISRVMTLEKGDLVLT  227
               I  +  +PDP +  LRL V  ++RQ  +T  M++     +A +S+ MTL  GD++LT
Sbjct  115  GPWIVTRDELPDPGDLRLRLRVNGEVRQDGNTSDMIFSPAELIAHLSQFMTLRPGDIILT  174

Query  228  GTPKGVGE-------VKAGDVMKASIE  247
            GTP GVG        +K GD ++  IE
Sbjct  175  GTPSGVGAGRAPPVFLKPGDTVEVEIE  201



Lambda      K        H        a         alpha
   0.318    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00026873

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460252 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hy...  187     2e-60


>CDD:460252 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase 
family.  This family consists of fumarylacetoacetate (FAA) 
hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also 
includes HHDD isomerase/OPET decarboxylase from E. coli strain 
W. FAA is the last enzyme in the tyrosine catabolic pathway, 
it hydrolyzes fumarylacetoacetate into fumarate and acetoacetate 
which then join the citric acid cycle. Mutations 
in FAA cause type I tyrosinemia in humans this is an inherited 
disorder mainly affecting the liver leading to liver cirrhosis, 
hepatocellular carcinoma, renal tubular damages and neurologic 
crises amongst other symptoms. The enzymatic defect 
causes the toxic accumulation of phenylalanine/tyrosine catabolites. 
The E. coli W enzyme HHDD isomerase/OPET decarboxylase 
contains two copies of this domain and functions in fourth 
and fifth steps of the homoprotocatechuate pathway; here 
it decarboxylates OPET to HHDD and isomerizes this to OHED. 
The final products of this pathway are pyruvic acid and succinic 
semialdehyde. This family also includes various hydratases 
and 4-oxalocrotonate decarboxylases which are involved 
in the bacterial meta-cleavage pathways for degradation of 
aromatic compounds. 2-hydroxypentadienoic acid hydratase encoded 
by mhpD in E. coli is involved in the phenylpropionic acid 
pathway of E. coli and catalyzes the conversion of 2-hydroxy 
pentadienoate to 4-hydroxy-2-keto-pentanoate and uses a 
Mn2+ co-factor. OHED hydratase encoded by hpcG in E. coli is 
involved in the homoprotocatechuic acid (HPC) catabolism. 
XylI in P. putida is a 4-Oxalocrotonate decarboxylase.
Length=210

 Score = 187 bits (476),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 80/207 (39%), Positives = 116/207 (56%), Gaps = 20/207 (10%)

Query  13   ICIGRNYADHITELNNTKP----KQPF-FFLKPPSSILLPREGPVLLPKGV-SLHYEVEL  66
            +C+G NYA+H  E    +P      P   F+KPPSS++ P + P++ P GV  L YE EL
Sbjct  1    VCVGLNYAEHAREAGKAEPVPDFPIPLVLFVKPPSSLIGPGD-PIVRPAGVTKLDYEAEL  59

Query  67   ALVMGKTVRDLDPNDEKGALDAIRSYLLAIDMTGRNVQDEAKKKGLPWSIAKGFDTFLPI  126
            A+V+G+  RD+ P +   ALD I  Y LA D++ R++Q       L W   K FD F P+
Sbjct  60   AVVIGRPARDVSPEE---ALDYIFGYTLANDVSARDLQRREMP--LQWFRGKSFDGFTPL  114

Query  127  SEEI-PKARIPDPHNAFLRLSVGSQLRQADSTGLMLYRIPRQLAEISRVMTLEKGDLVLT  185
               I  +  +PDP +  LRL V  ++RQ  +T  M++     +A +S+ MTL  GD++LT
Sbjct  115  GPWIVTRDELPDPGDLRLRLRVNGEVRQDGNTSDMIFSPAELIAHLSQFMTLRPGDIILT  174

Query  186  GTPKGVGE-------VKAGDVMKASIE  205
            GTP GVG        +K GD ++  IE
Sbjct  175  GTPSGVGAGRAPPVFLKPGDTVEVEIE  201



Lambda      K        H        a         alpha
   0.317    0.137    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00021993

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460252 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hy...  170     8e-54


>CDD:460252 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase 
family.  This family consists of fumarylacetoacetate (FAA) 
hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also 
includes HHDD isomerase/OPET decarboxylase from E. coli strain 
W. FAA is the last enzyme in the tyrosine catabolic pathway, 
it hydrolyzes fumarylacetoacetate into fumarate and acetoacetate 
which then join the citric acid cycle. Mutations 
in FAA cause type I tyrosinemia in humans this is an inherited 
disorder mainly affecting the liver leading to liver cirrhosis, 
hepatocellular carcinoma, renal tubular damages and neurologic 
crises amongst other symptoms. The enzymatic defect 
causes the toxic accumulation of phenylalanine/tyrosine catabolites. 
The E. coli W enzyme HHDD isomerase/OPET decarboxylase 
contains two copies of this domain and functions in fourth 
and fifth steps of the homoprotocatechuate pathway; here 
it decarboxylates OPET to HHDD and isomerizes this to OHED. 
The final products of this pathway are pyruvic acid and succinic 
semialdehyde. This family also includes various hydratases 
and 4-oxalocrotonate decarboxylases which are involved 
in the bacterial meta-cleavage pathways for degradation of 
aromatic compounds. 2-hydroxypentadienoic acid hydratase encoded 
by mhpD in E. coli is involved in the phenylpropionic acid 
pathway of E. coli and catalyzes the conversion of 2-hydroxy 
pentadienoate to 4-hydroxy-2-keto-pentanoate and uses a 
Mn2+ co-factor. OHED hydratase encoded by hpcG in E. coli is 
involved in the homoprotocatechuic acid (HPC) catabolism. 
XylI in P. putida is a 4-Oxalocrotonate decarboxylase.
Length=210

 Score = 170 bits (433),  Expect = 8e-54, Method: Composition-based stats.
 Identities = 76/203 (37%), Positives = 112/203 (55%), Gaps = 20/203 (10%)

Query  20   LNKSQLQKELNNTKP----KQPF-FFLKPPSSILLPREGPVLLPKGV-SLHYEVELALVM  73
            LN ++  +E    +P      P   F+KPPSS++ P + P++ P GV  L YE ELA+V+
Sbjct  5    LNYAEHAREAGKAEPVPDFPIPLVLFVKPPSSLIGPGD-PIVRPAGVTKLDYEAELAVVI  63

Query  74   GKTVRDLDPNDEKGALDAIRSYLLAIDMTGRNVQDEAKKKGLPWSIAKGFDTFLPISEEI  133
            G+  RD+ P +   ALD I  Y LA D++ R++Q       L W   K FD F P+   I
Sbjct  64   GRPARDVSPEE---ALDYIFGYTLANDVSARDLQRREMP--LQWFRGKSFDGFTPLGPWI  118

Query  134  -PKARIPDPHNAFLRLSVGSQLRQADSTGLMLYRIPRQLAEISRVMTLEKGDLVLTGTPK  192
              +  +PDP +  LRL V  ++RQ  +T  M++     +A +S+ MTL  GD++LTGTP 
Sbjct  119  VTRDELPDPGDLRLRLRVNGEVRQDGNTSDMIFSPAELIAHLSQFMTLRPGDIILTGTPS  178

Query  193  GVGE-------VKAGDVMKASIE  208
            GVG        +K GD ++  IE
Sbjct  179  GVGAGRAPPVFLKPGDTVEVEIE  201



Lambda      K        H        a         alpha
   0.315    0.135    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00021994

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460252 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hy...  187     2e-60


>CDD:460252 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase 
family.  This family consists of fumarylacetoacetate (FAA) 
hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also 
includes HHDD isomerase/OPET decarboxylase from E. coli strain 
W. FAA is the last enzyme in the tyrosine catabolic pathway, 
it hydrolyzes fumarylacetoacetate into fumarate and acetoacetate 
which then join the citric acid cycle. Mutations 
in FAA cause type I tyrosinemia in humans this is an inherited 
disorder mainly affecting the liver leading to liver cirrhosis, 
hepatocellular carcinoma, renal tubular damages and neurologic 
crises amongst other symptoms. The enzymatic defect 
causes the toxic accumulation of phenylalanine/tyrosine catabolites. 
The E. coli W enzyme HHDD isomerase/OPET decarboxylase 
contains two copies of this domain and functions in fourth 
and fifth steps of the homoprotocatechuate pathway; here 
it decarboxylates OPET to HHDD and isomerizes this to OHED. 
The final products of this pathway are pyruvic acid and succinic 
semialdehyde. This family also includes various hydratases 
and 4-oxalocrotonate decarboxylases which are involved 
in the bacterial meta-cleavage pathways for degradation of 
aromatic compounds. 2-hydroxypentadienoic acid hydratase encoded 
by mhpD in E. coli is involved in the phenylpropionic acid 
pathway of E. coli and catalyzes the conversion of 2-hydroxy 
pentadienoate to 4-hydroxy-2-keto-pentanoate and uses a 
Mn2+ co-factor. OHED hydratase encoded by hpcG in E. coli is 
involved in the homoprotocatechuic acid (HPC) catabolism. 
XylI in P. putida is a 4-Oxalocrotonate decarboxylase.
Length=210

 Score = 187 bits (476),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 80/207 (39%), Positives = 116/207 (56%), Gaps = 20/207 (10%)

Query  13   ICIGRNYADHITELNNTKP----KQPF-FFLKPPSSILLPREGPVLLPKGV-SLHYEVEL  66
            +C+G NYA+H  E    +P      P   F+KPPSS++ P + P++ P GV  L YE EL
Sbjct  1    VCVGLNYAEHAREAGKAEPVPDFPIPLVLFVKPPSSLIGPGD-PIVRPAGVTKLDYEAEL  59

Query  67   ALVMGKTVRDLDPNDEKGALDAIRSYLLAIDMTGRNVQDEAKKKGLPWSIAKGFDTFLPI  126
            A+V+G+  RD+ P +   ALD I  Y LA D++ R++Q       L W   K FD F P+
Sbjct  60   AVVIGRPARDVSPEE---ALDYIFGYTLANDVSARDLQRREMP--LQWFRGKSFDGFTPL  114

Query  127  SEEI-PKARIPDPHNAFLRLSVGSQLRQADSTGLMLYRIPRQLAEISRVMTLEKGDLVLT  185
               I  +  +PDP +  LRL V  ++RQ  +T  M++     +A +S+ MTL  GD++LT
Sbjct  115  GPWIVTRDELPDPGDLRLRLRVNGEVRQDGNTSDMIFSPAELIAHLSQFMTLRPGDIILT  174

Query  186  GTPKGVGE-------VKAGDVMKASIE  205
            GTP GVG        +K GD ++  IE
Sbjct  175  GTPSGVGAGRAPPVFLKPGDTVEVEIE  201



Lambda      K        H        a         alpha
   0.317    0.137    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00021995

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463936 pfam13621, Cupin_8, Cupin-like domain. This cupin like...  67.8    3e-13


>CDD:463936 pfam13621, Cupin_8, Cupin-like domain.  This cupin like domain 
shares similarity to the JmjC domain.
Length=251

 Score = 67.8 bits (166),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 92/258 (36%), Gaps = 38/258 (15%)

Query  178  PEEFQAEW--SSKPFILTQPVKQWPAYKNWS----VDSLLAKYGDTVFRAEAVDWKLSTY  231
            P EF  E+   +KP ++   VK WPA + W+    +D L  KYGD     E      +  
Sbjct  1    PAEFFREYVAKNKPVVIRGAVKDWPAVQKWTDSSLLDYLKDKYGDVEVTVEVTPDGRADR  60

Query  232  VDY------MRNNADESPLYLFDRAFVSKMGLKVGP---------PEEEPDAT-----YW  271
            + Y      +    +  P   F     +       P           E P+        +
Sbjct  61   LFYNDDFTFVNPKEERMPFGEFLDRLEAGEDTDTAPYAYLQSDNLRSEFPELLEDNDLPF  120

Query  272  PPPCFGEDFFSVLGNDRPDRQWLIIGPERSGSTFHKDPNATSAWNAVIRGSKYWIMFPSS  331
                FG           PD   L +G  RS ++ H D         V+RG K + +FP S
Sbjct  121  ATEAFGG---------EPDAVNLWMGNGRSVTSLHYDH--YENLYCVVRGRKRFTLFPPS  169

Query  332  SKLPPPPGVFVSDDQSEVTSPLSIAEWLLCFHAEARRTPGCIEGICGEGEILHVPSGWWH  391
                  PG      + +V S +             R     +      G++L++P+ WWH
Sbjct  170  DVPNLYPGPLEPTPEGQVFSLVDPLAPDFERFPRFRDAARPLVVTLNPGDVLYLPALWWH  229

Query  392  LVVNLEP-SIAITQNFTP  408
             V +L+P +IA+   +  
Sbjct  230  HVESLDPFNIAVNYWYDM  247



Lambda      K        H        a         alpha
   0.318    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00021996

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463936 pfam13621, Cupin_8, Cupin-like domain. This cupin like...  67.8    3e-13


>CDD:463936 pfam13621, Cupin_8, Cupin-like domain.  This cupin like domain 
shares similarity to the JmjC domain.
Length=251

 Score = 67.8 bits (166),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 92/258 (36%), Gaps = 38/258 (15%)

Query  178  PEEFQAEW--SSKPFILTQPVKQWPAYKNWS----VDSLLAKYGDTVFRAEAVDWKLSTY  231
            P EF  E+   +KP ++   VK WPA + W+    +D L  KYGD     E      +  
Sbjct  1    PAEFFREYVAKNKPVVIRGAVKDWPAVQKWTDSSLLDYLKDKYGDVEVTVEVTPDGRADR  60

Query  232  VDY------MRNNADESPLYLFDRAFVSKMGLKVGP---------PEEEPDAT-----YW  271
            + Y      +    +  P   F     +       P           E P+        +
Sbjct  61   LFYNDDFTFVNPKEERMPFGEFLDRLEAGEDTDTAPYAYLQSDNLRSEFPELLEDNDLPF  120

Query  272  PPPCFGEDFFSVLGNDRPDRQWLIIGPERSGSTFHKDPNATSAWNAVIRGSKYWIMFPSS  331
                FG           PD   L +G  RS ++ H D         V+RG K + +FP S
Sbjct  121  ATEAFGG---------EPDAVNLWMGNGRSVTSLHYDH--YENLYCVVRGRKRFTLFPPS  169

Query  332  SKLPPPPGVFVSDDQSEVTSPLSIAEWLLCFHAEARRTPGCIEGICGEGEILHVPSGWWH  391
                  PG      + +V S +             R     +      G++L++P+ WWH
Sbjct  170  DVPNLYPGPLEPTPEGQVFSLVDPLAPDFERFPRFRDAARPLVVTLNPGDVLYLPALWWH  229

Query  392  LVVNLEP-SIAITQNFTP  408
             V +L+P +IA+   +  
Sbjct  230  HVESLDPFNIAVNYWYDM  247



Lambda      K        H        a         alpha
   0.318    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00021997

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463936 pfam13621, Cupin_8, Cupin-like domain. This cupin like...  67.8    3e-13


>CDD:463936 pfam13621, Cupin_8, Cupin-like domain.  This cupin like domain 
shares similarity to the JmjC domain.
Length=251

 Score = 67.8 bits (166),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 92/258 (36%), Gaps = 38/258 (15%)

Query  178  PEEFQAEW--SSKPFILTQPVKQWPAYKNWS----VDSLLAKYGDTVFRAEAVDWKLSTY  231
            P EF  E+   +KP ++   VK WPA + W+    +D L  KYGD     E      +  
Sbjct  1    PAEFFREYVAKNKPVVIRGAVKDWPAVQKWTDSSLLDYLKDKYGDVEVTVEVTPDGRADR  60

Query  232  VDY------MRNNADESPLYLFDRAFVSKMGLKVGP---------PEEEPDAT-----YW  271
            + Y      +    +  P   F     +       P           E P+        +
Sbjct  61   LFYNDDFTFVNPKEERMPFGEFLDRLEAGEDTDTAPYAYLQSDNLRSEFPELLEDNDLPF  120

Query  272  PPPCFGEDFFSVLGNDRPDRQWLIIGPERSGSTFHKDPNATSAWNAVIRGSKYWIMFPSS  331
                FG           PD   L +G  RS ++ H D         V+RG K + +FP S
Sbjct  121  ATEAFGG---------EPDAVNLWMGNGRSVTSLHYDH--YENLYCVVRGRKRFTLFPPS  169

Query  332  SKLPPPPGVFVSDDQSEVTSPLSIAEWLLCFHAEARRTPGCIEGICGEGEILHVPSGWWH  391
                  PG      + +V S +             R     +      G++L++P+ WWH
Sbjct  170  DVPNLYPGPLEPTPEGQVFSLVDPLAPDFERFPRFRDAARPLVVTLNPGDVLYLPALWWH  229

Query  392  LVVNLEP-SIAITQNFTP  408
             V +L+P +IA+   +  
Sbjct  230  HVESLDPFNIAVNYWYDM  247



Lambda      K        H        a         alpha
   0.318    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00026874

Length=622
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426030 pfam01074, Glyco_hydro_38, Glycosyl hydrolases family ...  331     2e-110
CDD:400208 pfam07748, Glyco_hydro_38C, Glycosyl hydrolases family...  143     6e-40 
CDD:462728 pfam09261, Alpha-mann_mid, Alpha mannosidase middle do...  127     9e-36 


>CDD:426030 pfam01074, Glyco_hydro_38, Glycosyl hydrolases family 38 N-terminal 
domain.  Glycosyl hydrolases are key enzymes of carbohydrate 
metabolism.
Length=271

 Score = 331 bits (850),  Expect = 2e-110, Method: Composition-based stats.
 Identities = 119/274 (43%), Positives = 159/274 (58%), Gaps = 13/274 (5%)

Query  23   VYAIGHCHIDSCWLWPWAETKRKVARSWSNQCDLMDRYPEHRFTCSQAQQFKWLEQYYPS  82
            V+ +GH HID  WLW   ET+RKV R++S+   L+DR P+ RF  S+AQ F W  +  P 
Sbjct  2    VHLVGHSHIDVGWLWTVDETRRKVQRTFSSVLALLDRDPDRRFIWSEAQFFAWWWEDQPE  61

Query  83   VFDRVKRWVKKGHFQPIGGSWVEHDTNLPSGESLVRQFIYGQRFFESRFGERCSTFWLPD  142
            +F R+K+ V +G  +P+GG WVE D NLPSGESL+RQF+YGQRFF+  FG R    WLPD
Sbjct  62   LFKRIKKLVAEGRLEPVGGGWVEPDENLPSGESLIRQFLYGQRFFKEEFGVRPRVGWLPD  121

Query  143  TFGYSSQIPQICRLAGMSRFFTQKLSWNNINNF-PHTTFKWVALDGSQVMCHMAPSETYT  201
             FGYS+ +PQI + AG+  F TQ+L WN+ N F PH  F W   DG+++  HM P + Y 
Sbjct  122  PFGYSATLPQILKQAGIDYFLTQRLHWNDKNKFNPHLEFIWRGSDGTEIFTHMPPFDYYP  181

Query  202  -----AEAHFGDVKRSVTQHKSLDHDNTSLLVFGKGDGGGGPTFEHLEKLRRCRGLSDKV  256
                  +    D+      +      N  LL FG GDGGGGPT E LE + R   L    
Sbjct  182  TYGFQFQERAEDLLAYARNYADKTRTNHVLLPFGDGDGGGGPTDEMLEYINRWNAL----  237

Query  257  GLLPRVKMGDSVDDFFTRLEQKV--ANGTEFVTW  288
              LP+V+ G +  D+F  LE+        +F  +
Sbjct  238  PGLPKVQYG-TPSDYFDALEKATWPTKTDDFPPY  270


>CDD:400208 pfam07748, Glyco_hydro_38C, Glycosyl hydrolases family 38 C-terminal 
domain.  Glycosyl hydrolases are key enzymes of carbohydrate 
metabolism.
Length=204

 Score = 143 bits (362),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 54/156 (35%), Positives = 78/156 (50%), Gaps = 9/156 (6%)

Query  468  LDNG--KLRVDVQDGVITSLYDLEAEREVIAKGGKAGQLVVFDDKPLYWQAWDVEVYHLD  525
            L+NG  K+  D   G +TS+YD E  REV+A+ G   Q  +++D P Y  AWD   ++  
Sbjct  1    LENGFLKVEFDNDTGTLTSIYDKELSREVLAEVG--NQFGLYEDIPGYSDAWDFRPFYEA  58

Query  526  SRKELQAGKTSIAEEGPHRVSVATTIQISDQSWVKTTISLAAAVDDQPSYVEFESEVEWQ  585
               E+      + E+GP    V    +I   S +   I L       P  +EFE+ V+W 
Sbjct  59   KPLEVDEQSIEVVEDGPLVAEVHVKFKIG-GSEISQVIRLYK---GSP-RLEFETTVDWH  113

Query  586  ETMKFLKVEFPVDITNTEASYETQYGITRRPTHYNT  621
            E    LKV FP+D     A+ E  +G+ +RPTH NT
Sbjct  114  EREVLLKVAFPIDSQAEFATDENGFGVIKRPTHQNT  149


>CDD:462728 pfam09261, Alpha-mann_mid, Alpha mannosidase middle domain.  
Members of this family adopt a structure consisting of three 
alpha helices, in an immunoglobulin/albumin-binding domain-like 
fold. They are predominantly found in the enzyme alpha-mannosidase.
Length=98

 Score = 127 bits (322),  Expect = 9e-36, Method: Composition-based stats.
 Identities = 47/100 (47%), Positives = 68/100 (68%), Gaps = 2/100 (2%)

Query  295  ELHRGTYTTQANNKRNNRKSEFLLRELEYLSTLASLTKTNGEYKYPKNDIDDMWEGVLLC  354
            E HRGTYT++A+ KR NRK E LLR  E LS+LA+L+     Y+YPK +++++W+ +LL 
Sbjct  1    EYHRGTYTSRADLKRLNRKLEHLLRAAEQLSSLAALSLLG--YEYPKEELEELWKALLLN  58

Query  355  QFHDCLPGSSIEMCYDDSDKLYAQIFETGERARQQALEAL  394
            QFHD LPGSSI+  Y D++   A+  +  E+  + AL  L
Sbjct  59   QFHDILPGSSIQEVYRDAEARLAEALKETEKLLEDALRLL  98



Lambda      K        H        a         alpha
   0.319    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 792046840


Query= TCONS_00021998

Length=648
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426030 pfam01074, Glyco_hydro_38, Glycosyl hydrolases family ...  333     4e-111
CDD:400208 pfam07748, Glyco_hydro_38C, Glycosyl hydrolases family...  143     6e-40 
CDD:462728 pfam09261, Alpha-mann_mid, Alpha mannosidase middle do...  127     1e-35 


>CDD:426030 pfam01074, Glyco_hydro_38, Glycosyl hydrolases family 38 N-terminal 
domain.  Glycosyl hydrolases are key enzymes of carbohydrate 
metabolism.
Length=271

 Score = 333 bits (856),  Expect = 4e-111, Method: Composition-based stats.
 Identities = 119/274 (43%), Positives = 159/274 (58%), Gaps = 13/274 (5%)

Query  49   VYAIGHCHIDSCWLWPWAETKRKVARSWSNQCDLMDRYPEHRFTCSQAQQFKWLEQYYPS  108
            V+ +GH HID  WLW   ET+RKV R++S+   L+DR P+ RF  S+AQ F W  +  P 
Sbjct  2    VHLVGHSHIDVGWLWTVDETRRKVQRTFSSVLALLDRDPDRRFIWSEAQFFAWWWEDQPE  61

Query  109  VFDRVKRWVKKGHFQPIGGSWVEHDTNLPSGESLVRQFIYGQRFFESRFGERCSTFWLPD  168
            +F R+K+ V +G  +P+GG WVE D NLPSGESL+RQF+YGQRFF+  FG R    WLPD
Sbjct  62   LFKRIKKLVAEGRLEPVGGGWVEPDENLPSGESLIRQFLYGQRFFKEEFGVRPRVGWLPD  121

Query  169  TFGYSSQIPQICRLAGMSRFFTQKLSWNNINNF-PHTTFKWVALDGSQVMCHMAPSETYT  227
             FGYS+ +PQI + AG+  F TQ+L WN+ N F PH  F W   DG+++  HM P + Y 
Sbjct  122  PFGYSATLPQILKQAGIDYFLTQRLHWNDKNKFNPHLEFIWRGSDGTEIFTHMPPFDYYP  181

Query  228  -----AEAHFGDVKRSVTQHKSLDHDNTSLLVFGKGDGGGGPTFEHLEKLRRCRGLSDKV  282
                  +    D+      +      N  LL FG GDGGGGPT E LE + R   L    
Sbjct  182  TYGFQFQERAEDLLAYARNYADKTRTNHVLLPFGDGDGGGGPTDEMLEYINRWNAL----  237

Query  283  GLLPRVKMGDSVDDFFTRLEQKV--ANGTEFVTW  314
              LP+V+ G +  D+F  LE+        +F  +
Sbjct  238  PGLPKVQYG-TPSDYFDALEKATWPTKTDDFPPY  270


>CDD:400208 pfam07748, Glyco_hydro_38C, Glycosyl hydrolases family 38 C-terminal 
domain.  Glycosyl hydrolases are key enzymes of carbohydrate 
metabolism.
Length=204

 Score = 143 bits (363),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 54/156 (35%), Positives = 78/156 (50%), Gaps = 9/156 (6%)

Query  494  LDNG--KLRVDVQDGVITSLYDLEAEREVIAKGGKAGQLVVFDDKPLYWQAWDVEVYHLD  551
            L+NG  K+  D   G +TS+YD E  REV+A+ G   Q  +++D P Y  AWD   ++  
Sbjct  1    LENGFLKVEFDNDTGTLTSIYDKELSREVLAEVG--NQFGLYEDIPGYSDAWDFRPFYEA  58

Query  552  SRKELQAGKTSIAEEGPHRVSVATTIQISDQSWVKTTISLAAAVDDQPSYVEFESEVEWQ  611
               E+      + E+GP    V    +I   S +   I L       P  +EFE+ V+W 
Sbjct  59   KPLEVDEQSIEVVEDGPLVAEVHVKFKIG-GSEISQVIRLYK---GSP-RLEFETTVDWH  113

Query  612  ETMKFLKVEFPVDITNTEASYETQYGITRRPTHYNT  647
            E    LKV FP+D     A+ E  +G+ +RPTH NT
Sbjct  114  EREVLLKVAFPIDSQAEFATDENGFGVIKRPTHQNT  149


>CDD:462728 pfam09261, Alpha-mann_mid, Alpha mannosidase middle domain.  
Members of this family adopt a structure consisting of three 
alpha helices, in an immunoglobulin/albumin-binding domain-like 
fold. They are predominantly found in the enzyme alpha-mannosidase.
Length=98

 Score = 127 bits (322),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 47/100 (47%), Positives = 68/100 (68%), Gaps = 2/100 (2%)

Query  321  ELHRGTYTTQANNKRNNRKSEFLLRELEYLSTLASLTKTNGEYKYPKNDIDDMWEGVLLC  380
            E HRGTYT++A+ KR NRK E LLR  E LS+LA+L+     Y+YPK +++++W+ +LL 
Sbjct  1    EYHRGTYTSRADLKRLNRKLEHLLRAAEQLSSLAALSLLG--YEYPKEELEELWKALLLN  58

Query  381  QFHDCLPGSSIEMCYDDSDKLYAQIFETGERARQQALEAL  420
            QFHD LPGSSI+  Y D++   A+  +  E+  + AL  L
Sbjct  59   QFHDILPGSSIQEVYRDAEARLAEALKETEKLLEDALRLL  98



Lambda      K        H        a         alpha
   0.319    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 818508450


Query= TCONS_00026875

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462763 pfam09340, NuA4, Histone acetyltransferase subunit NuA...  114     1e-34


>CDD:462763 pfam09340, NuA4, Histone acetyltransferase subunit NuA4.  The 
NuA4 histone acetyltransferase (HAT) multisubunit complex is 
responsible for acetylation of histone H4 and H2A N-terminal 
tails in yeast. NuA4 complexes are highly conserved in eukaryotes 
and play primary roles in transcription, cellular response 
to DNA damage, and cell cycle control.
Length=78

 Score = 114 bits (289),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 41/93 (44%), Positives = 54/93 (58%), Gaps = 16/93 (17%)

Query  77   DLRDALQKKRLMDKSMAQLEDQIYRFEQSYLEETT-AGNIIKGFDNYIKGSGSSTGLGAS  135
            +L++ L KKR ++K +A LE+QIY  E  YLEET+  GNIIKGFD Y+K S S+      
Sbjct  1    ELKELLAKKRELEKELAALEEQIYDKETEYLEETSPGGNIIKGFDGYLKSSTSAAAG---  57

Query  136  GIALAGGMGGAARRKSQVTDADRVFSRSSASFM  168
                        RRK + TD DR+FS SS +  
Sbjct  58   ------------RRKRKFTDEDRIFSLSSVTSP  78



Lambda      K        H        a         alpha
   0.308    0.123    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00022000

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00026876

Length=478


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00026877

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462258 pfam07766, LETM1, LETM1-like protein. Members of this ...  332     1e-115


>CDD:462258 pfam07766, LETM1, LETM1-like protein.  Members of this family 
are inner mitochondrial membrane proteins which play a role 
in potassium and hydrogen ion exchange. Deletion of LETM1 is 
thought to be involved in the development of Wolf-Hirschhorn 
syndrome in humans.
Length=229

 Score = 332 bits (854),  Expect = 1e-115, Method: Composition-based stats.
 Identities = 128/207 (62%), Positives = 154/207 (74%), Gaps = 2/207 (1%)

Query  1    MFVIIPFAELLLPVALKLFPNLLPSTYEGQKAREKKALNLSSTRQEVSTFLKNTLRESGL  60
            +F+I+PFAELLLPV LKLFPNLLPST+  +K +E+K       R EV+ FL+ T+ ES  
Sbjct  24   VFIIVPFAELLLPVLLKLFPNLLPSTFWSKKQKEEKLKKRLKARLEVAKFLQETVEESLS  83

Query  61   PVTPAAVKNEEFGEFFKKIRTTGETPSTEDVIKVCKIFKDDLTLDNLSRPQLVAICKYMN  120
              T      EEF EFFKK+R+ GE PS E+++KV K+FKDDLTLDNLSRPQLVA+CKYMN
Sbjct  84   DETTE--LKEEFKEFFKKVRSGGEPPSNEEILKVAKLFKDDLTLDNLSRPQLVALCKYMN  141

Query  121  LNSFGTDAMLRYNIRHRMRQIKRDDRAIFYEGVDSLSVPELQMACASRGIRTHGISPARL  180
            L  FGTD +LRY +RH++ +IKRDDRAI  EGVDSLS+ ELQ AC SRGIR  G+S  RL
Sbjct  142  LTPFGTDNLLRYRLRHKLLEIKRDDRAIAREGVDSLSLEELQSACYSRGIRPLGLSEERL  201

Query  181  REDLAMWLDLRLKQGVPSTLLVLSNAY  207
            RE L  WLDL L   VPS+LL+LS A 
Sbjct  202  REWLQQWLDLSLNLKVPSSLLLLSRAV  228



Lambda      K        H        a         alpha
   0.311    0.128    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00026878

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00022003

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00026879

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00022001

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00022002

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00026880

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00022004

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00022005

Length=283


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00022008

Length=291


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00022006

Length=465


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 575139000


Query= TCONS_00026881

Length=291


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00022007

Length=323


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00022010

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00022009

Length=291


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00022012

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00022011

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00022013

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396619 pfam02127, Peptidase_M18, Aminopeptidase I zinc metall...  595     0.0  


>CDD:396619 pfam02127, Peptidase_M18, Aminopeptidase I zinc metalloprotease 
(M18).  
Length=430

 Score = 595 bits (1537),  Expect = 0.0, Method: Composition-based stats.
 Identities = 247/464 (53%), Positives = 320/464 (69%), Gaps = 36/464 (8%)

Query  19   FVNASPTPFHAVQSAKELLIKAGFQEIKEKDSWASTCRPGGKYYLTRNSSTIVAFAVGKK  78
            F+N SPTP+H V    E L+KAGF+E+ EK++W     PGGKY++TRN S+I+AFA+G K
Sbjct  1    FINKSPTPYHVVAYIAERLLKAGFKELSEKENWQI--EPGGKYFVTRNGSSIIAFAIGGK  58

Query  79   WKPGNAISMIGAHTDSPVLRVKPVSNKRGEGYMQVGVETYGGGIWHTWFDRDLGVAGRAM  138
            WKPGN  S+IGAHTDSP LR+KP+S K+ EGY+QVGVETYGGGIW TW DRDL +AGR  
Sbjct  59   WKPGNGFSIIGAHTDSPTLRLKPISIKKVEGYLQVGVETYGGGIWSTWLDRDLSLAGRVF  118

Query  139  VKTRDGSIVQKLIRIDRPILRIPTLAIHLDR--QETFSFNKETQLFPIAGLVAAELNRTG  196
            VK     I+ +L+ I+ P+LRIP LAIHLDR   E F FN ET+L PI GL+      T 
Sbjct  119  VKNAGEKIIARLVNINDPVLRIPNLAIHLDRDINENFKFNTETELVPIIGLIGPNELPTE  178

Query  197  EPKDAEAKQDGKGEFSPLKAITERHHPYFVELLATEAGVEPADILDFEMILFDTQKSCLG  256
              +                    +HHP  + L+A E G+E  DI+  ++IL+D Q + +G
Sbjct  179  TNEK------------------NKHHPALLGLIAEELGIEVEDIVSMDLILYDAQPAKIG  220

Query  257  GMHEEFIFSPRLDNLNSSFCATVGLIESVADSSALDDETSIRLISLFDHEEIGSRTAQGA  316
            G  +EF+F+PRLDN  S F A   LI+S  D S  DD+  IR+++LFD+EEIGS +AQGA
Sbjct  221  GFDKEFLFAPRLDNKVSCFAAMEALIDSAEDESDPDDK--IRIVALFDNEEIGSTSAQGA  278

Query  317  DSNLLPAVIHRLSVLPSTSSDQDDVSTAYEQTLSTSFLLSADMAHAVHPNYAAKYESDHR  376
            DSN L  V+ R+S+    S D       +    + SFL+SAD+AHA+HPNY++K+E +HR
Sbjct  279  DSNFLEYVLERISIAGKKSRDF------HLAVQAKSFLISADVAHAIHPNYSSKHEENHR  332

Query  377  PEINKGPVIKINANARYATNSPGIVLLQEVARKAAENGGEGVPLQLFVVRNDSSCGSTIG  436
            P + KGPVIK+NAN RYATNS G  L++E+A+ A      GVPLQ+FVVRNDS CGSTIG
Sbjct  333  PLLGKGPVIKVNANQRYATNSAGAALVKELAQLA------GVPLQVFVVRNDSPCGSTIG  386

Query  437  PMLSAALGARTLDLGNPQLSMHSIRETGGTYDVGHSIRLFTSFF  480
            P+L+A  G RT+DLGNPQLSMHSIRET G+ DV  +++LF +FF
Sbjct  387  PILAARTGIRTIDLGNPQLSMHSIRETTGSKDVYQAVKLFKAFF  430



Lambda      K        H        a         alpha
   0.317    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00026882

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396619 pfam02127, Peptidase_M18, Aminopeptidase I zinc metall...  302     1e-102


>CDD:396619 pfam02127, Peptidase_M18, Aminopeptidase I zinc metalloprotease 
(M18).  
Length=430

 Score = 302 bits (776),  Expect = 1e-102, Method: Composition-based stats.
 Identities = 131/236 (56%), Positives = 171/236 (72%), Gaps = 14/236 (6%)

Query  1    MILFDTQKSCLGGMHEEFIFSPRLDNLNSSFCATVGLIESVADSSALDDETSIRLISLFD  60
            +IL+D Q + +GG  +EF+F+PRLDN  S F A   LI+S  D S  DD+  IR+++LFD
Sbjct  209  LILYDAQPAKIGGFDKEFLFAPRLDNKVSCFAAMEALIDSAEDESDPDDK--IRIVALFD  266

Query  61   HEEIGSRTAQGADSNLLPAVIHRLSVLPSTSSDQDDVSTAYEQTLSTSFLLSADMAHAVH  120
            +EEIGS +AQGADSN L  V+ R+S+    S D            + SFL+SAD+AHA+H
Sbjct  267  NEEIGSTSAQGADSNFLEYVLERISIAGKKSRDFH------LAVQAKSFLISADVAHAIH  320

Query  121  PNYAAKYESDHRPEINKGPVIKINANARYATNSPGIVLLQEVARKAAENGGEGVPLQLFV  180
            PNY++K+E +HRP + KGPVIK+NAN RYATNS G  L++E+A+ A      GVPLQ+FV
Sbjct  321  PNYSSKHEENHRPLLGKGPVIKVNANQRYATNSAGAALVKELAQLA------GVPLQVFV  374

Query  181  VRNDSSCGSTIGPMLSAALGARTLDLGNPQLSMHSIRETGGTYDVGHSIRLFTSFF  236
            VRNDS CGSTIGP+L+A  G RT+DLGNPQLSMHSIRET G+ DV  +++LF +FF
Sbjct  375  VRNDSPCGSTIGPILAARTGIRTIDLGNPQLSMHSIRETTGSKDVYQAVKLFKAFF  430



Lambda      K        H        a         alpha
   0.316    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00026883

Length=491
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396619 pfam02127, Peptidase_M18, Aminopeptidase I zinc metall...  587     0.0  


>CDD:396619 pfam02127, Peptidase_M18, Aminopeptidase I zinc metalloprotease 
(M18).  
Length=430

 Score = 587 bits (1515),  Expect = 0.0, Method: Composition-based stats.
 Identities = 246/464 (53%), Positives = 319/464 (69%), Gaps = 38/464 (8%)

Query  19   FVNASPTPFHAVQSAKELLIKAGFQEI--KDSWASTCRPGGKYYLTRNSSTIVAFAVGKK  76
            F+N SPTP+H V    E L+KAGF+E+  K++W     PGGKY++TRN S+I+AFA+G K
Sbjct  1    FINKSPTPYHVVAYIAERLLKAGFKELSEKENWQI--EPGGKYFVTRNGSSIIAFAIGGK  58

Query  77   WKPGNAISMIGAHTDSPVLRVKPVSNKRGEGYMQVGVETYGGGIWHTWFDRDLGVAGRAM  136
            WKPGN  S+IGAHTDSP LR+KP+S K+ EGY+QVGVETYGGGIW TW DRDL +AGR  
Sbjct  59   WKPGNGFSIIGAHTDSPTLRLKPISIKKVEGYLQVGVETYGGGIWSTWLDRDLSLAGRVF  118

Query  137  VKTRDGSIVQKLIRIDRPILRIPTLAIHLDR--QETFSFNKETQLFPIAGLVAAELNRTG  194
            VK     I+ +L+ I+ P+LRIP LAIHLDR   E F FN ET+L PI GL+      T 
Sbjct  119  VKNAGEKIIARLVNINDPVLRIPNLAIHLDRDINENFKFNTETELVPIIGLIGPNELPTE  178

Query  195  EPKDAEAKQDGKGEFSPLKAITERHHPYFVELLATEAGVEPADILDFEMILFDTQKSCLG  254
              +                    +HHP  + L+A E G+E  DI+  ++IL+D Q + +G
Sbjct  179  TNEK------------------NKHHPALLGLIAEELGIEVEDIVSMDLILYDAQPAKIG  220

Query  255  GMHEEFIFSPRLDNLNSSFCATVGLIESVADSSALDDETSIRLISLFDHEEIGSRTAQGA  314
            G  +EF+F+PRLDN  S F A   LI+S  D S  DD+  IR+++LFD+EEIGS +AQGA
Sbjct  221  GFDKEFLFAPRLDNKVSCFAAMEALIDSAEDESDPDDK--IRIVALFDNEEIGSTSAQGA  278

Query  315  DSNLLPAVIHRLSVLPSTSSDQDDVSTAYEQTLSTSFLLSADMAHAVHPNYAAKYESDHR  374
            DSN L  V+ R+S+    S D       +    + SFL+SAD+AHA+HPNY++K+E +HR
Sbjct  279  DSNFLEYVLERISIAGKKSRDF------HLAVQAKSFLISADVAHAIHPNYSSKHEENHR  332

Query  375  PEINKGPVIKINANARYATNSPGIVLLQEVARKAAENGGEGVPLQLFVVRNDSSCGSTIG  434
            P + KGPVIK+NAN RYATNS G  L++E+A+ A      GVPLQ+FVVRNDS CGSTIG
Sbjct  333  PLLGKGPVIKVNANQRYATNSAGAALVKELAQLA------GVPLQVFVVRNDSPCGSTIG  386

Query  435  PMLSAALGARTLDLGNPQLSMHSIRETGGTYDVGHSIRLFTSFF  478
            P+L+A  G RT+DLGNPQLSMHSIRET G+ DV  +++LF +FF
Sbjct  387  PILAARTGIRTIDLGNPQLSMHSIRETTGSKDVYQAVKLFKAFF  430



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 605626400


Query= TCONS_00022014

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396619 pfam02127, Peptidase_M18, Aminopeptidase I zinc metall...  595     0.0  


>CDD:396619 pfam02127, Peptidase_M18, Aminopeptidase I zinc metalloprotease 
(M18).  
Length=430

 Score = 595 bits (1537),  Expect = 0.0, Method: Composition-based stats.
 Identities = 247/464 (53%), Positives = 320/464 (69%), Gaps = 36/464 (8%)

Query  19   FVNASPTPFHAVQSAKELLIKAGFQEIKEKDSWASTCRPGGKYYLTRNSSTIVAFAVGKK  78
            F+N SPTP+H V    E L+KAGF+E+ EK++W     PGGKY++TRN S+I+AFA+G K
Sbjct  1    FINKSPTPYHVVAYIAERLLKAGFKELSEKENWQI--EPGGKYFVTRNGSSIIAFAIGGK  58

Query  79   WKPGNAISMIGAHTDSPVLRVKPVSNKRGEGYMQVGVETYGGGIWHTWFDRDLGVAGRAM  138
            WKPGN  S+IGAHTDSP LR+KP+S K+ EGY+QVGVETYGGGIW TW DRDL +AGR  
Sbjct  59   WKPGNGFSIIGAHTDSPTLRLKPISIKKVEGYLQVGVETYGGGIWSTWLDRDLSLAGRVF  118

Query  139  VKTRDGSIVQKLIRIDRPILRIPTLAIHLDR--QETFSFNKETQLFPIAGLVAAELNRTG  196
            VK     I+ +L+ I+ P+LRIP LAIHLDR   E F FN ET+L PI GL+      T 
Sbjct  119  VKNAGEKIIARLVNINDPVLRIPNLAIHLDRDINENFKFNTETELVPIIGLIGPNELPTE  178

Query  197  EPKDAEAKQDGKGEFSPLKAITERHHPYFVELLATEAGVEPADILDFEMILFDTQKSCLG  256
              +                    +HHP  + L+A E G+E  DI+  ++IL+D Q + +G
Sbjct  179  TNEK------------------NKHHPALLGLIAEELGIEVEDIVSMDLILYDAQPAKIG  220

Query  257  GMHEEFIFSPRLDNLNSSFCATVGLIESVADSSALDDETSIRLISLFDHEEIGSRTAQGA  316
            G  +EF+F+PRLDN  S F A   LI+S  D S  DD+  IR+++LFD+EEIGS +AQGA
Sbjct  221  GFDKEFLFAPRLDNKVSCFAAMEALIDSAEDESDPDDK--IRIVALFDNEEIGSTSAQGA  278

Query  317  DSNLLPAVIHRLSVLPSTSSDQDDVSTAYEQTLSTSFLLSADMAHAVHPNYAAKYESDHR  376
            DSN L  V+ R+S+    S D       +    + SFL+SAD+AHA+HPNY++K+E +HR
Sbjct  279  DSNFLEYVLERISIAGKKSRDF------HLAVQAKSFLISADVAHAIHPNYSSKHEENHR  332

Query  377  PEINKGPVIKINANARYATNSPGIVLLQEVARKAAENGGEGVPLQLFVVRNDSSCGSTIG  436
            P + KGPVIK+NAN RYATNS G  L++E+A+ A      GVPLQ+FVVRNDS CGSTIG
Sbjct  333  PLLGKGPVIKVNANQRYATNSAGAALVKELAQLA------GVPLQVFVVRNDSPCGSTIG  386

Query  437  PMLSAALGARTLDLGNPQLSMHSIRETGGTYDVGHSIRLFTSFF  480
            P+L+A  G RT+DLGNPQLSMHSIRET G+ DV  +++LF +FF
Sbjct  387  PILAARTGIRTIDLGNPQLSMHSIRETTGSKDVYQAVKLFKAFF  430



Lambda      K        H        a         alpha
   0.317    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00022015

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396619 pfam02127, Peptidase_M18, Aminopeptidase I zinc metall...  583     0.0  


>CDD:396619 pfam02127, Peptidase_M18, Aminopeptidase I zinc metalloprotease 
(M18).  
Length=430

 Score = 583 bits (1506),  Expect = 0.0, Method: Composition-based stats.
 Identities = 246/475 (52%), Positives = 319/475 (67%), Gaps = 47/475 (10%)

Query  19   FVNASPTQTGTDSSTKSLAFHAVQSAKELLIKAGFQEIKEKDSWASTCRPGGKYYLTRNS  78
            F+N SPT            +H V    E L+KAGF+E+ EK++W     PGGKY++TRN 
Sbjct  1    FINKSPTP-----------YHVVAYIAERLLKAGFKELSEKENWQI--EPGGKYFVTRNG  47

Query  79   STIVAFAVGKKWKPGNAISMIGAHTDSPVLRVKPVSNKRGEGYMQVGVETYGGGIWHTWF  138
            S+I+AFA+G KWKPGN  S+IGAHTDSP LR+KP+S K+ EGY+QVGVETYGGGIW TW 
Sbjct  48   SSIIAFAIGGKWKPGNGFSIIGAHTDSPTLRLKPISIKKVEGYLQVGVETYGGGIWSTWL  107

Query  139  DRDLGVAGRAMVKTRDGSIVQKLIRIDRPILRIPTLAIHLDR--QETFSFNKETQLFPIA  196
            DRDL +AGR  VK     I+ +L+ I+ P+LRIP LAIHLDR   E F FN ET+L PI 
Sbjct  108  DRDLSLAGRVFVKNAGEKIIARLVNINDPVLRIPNLAIHLDRDINENFKFNTETELVPII  167

Query  197  GLVAAELNRTGEPKDAEAKQDGKGEFSPLKAITERHHPYFVELLATEAGVEPADILDFEM  256
            GL+      T   +                    +HHP  + L+A E G+E  DI+  ++
Sbjct  168  GLIGPNELPTETNEK------------------NKHHPALLGLIAEELGIEVEDIVSMDL  209

Query  257  ILFDTQKSCLGGMHEEFIFSPRLDNLNSSFCATVGLIESVADSSALDDETSIRLISLFDH  316
            IL+D Q + +GG  +EF+F+PRLDN  S F A   LI+S  D S  DD+  IR+++LFD+
Sbjct  210  ILYDAQPAKIGGFDKEFLFAPRLDNKVSCFAAMEALIDSAEDESDPDDK--IRIVALFDN  267

Query  317  EEIGSRTAQGADSNLLPAVIHRLSVLPSTSSDQDDVSTAYEQTLSTSFLLSADMAHAVHP  376
            EEIGS +AQGADSN L  V+ R+S+    S D       +    + SFL+SAD+AHA+HP
Sbjct  268  EEIGSTSAQGADSNFLEYVLERISIAGKKSRDF------HLAVQAKSFLISADVAHAIHP  321

Query  377  NYAAKYESDHRPEINKGPVIKINANARYATNSPGIVLLQEVARKAAENGGEGVPLQLFVV  436
            NY++K+E +HRP + KGPVIK+NAN RYATNS G  L++E+A+ A      GVPLQ+FVV
Sbjct  322  NYSSKHEENHRPLLGKGPVIKVNANQRYATNSAGAALVKELAQLA------GVPLQVFVV  375

Query  437  RNDSSCGSTIGPMLSAALGARTLDLGNPQLSMHSIRETGGTYDVGHSIRLFTSFF  491
            RNDS CGSTIGP+L+A  G RT+DLGNPQLSMHSIRET G+ DV  +++LF +FF
Sbjct  376  RNDSPCGSTIGPILAARTGIRTIDLGNPQLSMHSIRETTGSKDVYQAVKLFKAFF  430



Lambda      K        H        a         alpha
   0.316    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00022016

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396619 pfam02127, Peptidase_M18, Aminopeptidase I zinc metall...  302     1e-102


>CDD:396619 pfam02127, Peptidase_M18, Aminopeptidase I zinc metalloprotease 
(M18).  
Length=430

 Score = 302 bits (776),  Expect = 1e-102, Method: Composition-based stats.
 Identities = 131/236 (56%), Positives = 171/236 (72%), Gaps = 14/236 (6%)

Query  1    MILFDTQKSCLGGMHEEFIFSPRLDNLNSSFCATVGLIESVADSSALDDETSIRLISLFD  60
            +IL+D Q + +GG  +EF+F+PRLDN  S F A   LI+S  D S  DD+  IR+++LFD
Sbjct  209  LILYDAQPAKIGGFDKEFLFAPRLDNKVSCFAAMEALIDSAEDESDPDDK--IRIVALFD  266

Query  61   HEEIGSRTAQGADSNLLPAVIHRLSVLPSTSSDQDDVSTAYEQTLSTSFLLSADMAHAVH  120
            +EEIGS +AQGADSN L  V+ R+S+    S D            + SFL+SAD+AHA+H
Sbjct  267  NEEIGSTSAQGADSNFLEYVLERISIAGKKSRDFH------LAVQAKSFLISADVAHAIH  320

Query  121  PNYAAKYESDHRPEINKGPVIKINANARYATNSPGIVLLQEVARKAAENGGEGVPLQLFV  180
            PNY++K+E +HRP + KGPVIK+NAN RYATNS G  L++E+A+ A      GVPLQ+FV
Sbjct  321  PNYSSKHEENHRPLLGKGPVIKVNANQRYATNSAGAALVKELAQLA------GVPLQVFV  374

Query  181  VRNDSSCGSTIGPMLSAALGARTLDLGNPQLSMHSIRETGGTYDVGHSIRLFTSFF  236
            VRNDS CGSTIGP+L+A  G RT+DLGNPQLSMHSIRET G+ DV  +++LF +FF
Sbjct  375  VRNDSPCGSTIGPILAARTGIRTIDLGNPQLSMHSIRETTGSKDVYQAVKLFKAFF  430



Lambda      K        H        a         alpha
   0.316    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00022017

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  76.1    2e-17
CDD:433013 pfam13177, DNA_pol3_delta2, DNA polymerase III, delta ...  66.9    7e-14


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 76.1 bits (188),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 59/152 (39%), Gaps = 39/152 (26%)

Query  75   MLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERG--IGIVREKVKG-FARTQ  131
            +L YGPPGTGKT+   A+AK L  P       +E++ S+     +G   ++++  F   +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAP------FIEISGSELVSKYVGESEKRLRELFEAAK  54

Query  132  LSQPTGLDSSYFEQYPCPPFKIIILDEADSM-----------TQDAQSALRRTMEQYSRI  180
               P                 +I +DE D++           ++   + L   ++ ++  
Sbjct  55   KLAPC----------------VIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSS  98

Query  181  TRFCLV---CNYVTRIIEPLASRCSKFRFKPL  209
                +V    N   ++   L  R  +    PL
Sbjct  99   NSKVIVIAATNRPDKLDPALLGRFDRIIEFPL  130


>CDD:433013 pfam13177, DNA_pol3_delta2, DNA polymerase III, delta subunit. 
 DNA polymerase III, delta subunit (EC 2.7.7.7) is required 
for, along with delta' subunit, the assembly of the processivity 
factor beta(2) onto primed DNA in the DNA polymerase 
III holoenzyme-catalyzed reaction. The delta subunit is also 
known as HolA.
Length=161

 Score = 66.9 bits (164),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 50/175 (29%), Positives = 76/175 (43%), Gaps = 35/175 (20%)

Query  56   QDHTTKVLQRTLQASNLPH-MLFYGPPGTGKTSTILALAKSLF----------GPALYRS  104
            Q    ++LQ +L+   L H  LF GP G GK    LA AK+LF          G      
Sbjct  2    QPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEEPGDDLPCGQCRSCR  61

Query  105  RILELN-------ASDERGIGI--VREKVKGFARTQLSQPTGLDSSYFEQYPCPPFKIII  155
            RI   N         + + I I  +RE  K F++          S Y  +      K+ I
Sbjct  62   RIESGNHPDLVIIEPEGQSIKIDQIRELQKEFSK----------SPYEGKK-----KVYI  106

Query  156  LDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLD  210
            +++A+ MT  A ++L + +E+    T   L+    +R++  + SRC   RFKPL 
Sbjct  107  IEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKPLS  161



Lambda      K        H        a         alpha
   0.316    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00026884

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462513 pfam08542, Rep_fac_C, Replication factor C C-terminal ...  79.4    2e-19
CDD:459627 pfam00004, AAA, ATPase family associated with various ...  72.6    2e-16


>CDD:462513 pfam08542, Rep_fac_C, Replication factor C C-terminal domain. 
 This is the C-terminal domain of RFC (replication factor-C) 
protein of the clamp loader complex which binds to the DNA 
sliding clamp (proliferating cell nuclear antigen, PCNA). The 
five modules of RFC assemble into a right-handed spiral, 
which results in only three of the five RFC subunits (RFC-A, 
RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped 
gap between RFC-E and the PCNA clamp-loader complex. 
The C-terminal is vital for the correct orientation of RFC-E 
with respect to RFC-A.
Length=87

 Score = 79.4 bits (197),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (44%), Gaps = 4/91 (4%)

Query  222  VPESVIDRLIQAMQPKKLGSSYEAISTVVTDIVADGWSAGQLVLQLYRRIVYNDAIPDIQ  281
                 I+ ++ +          EA   V   +V  G+S   ++ QL+R +   D +P+  
Sbjct  1    PHPEDIEEILNSCLNGDFD---EAYKKVRELLVEKGYSLQDIITQLHRVVKSLD-LPEEV  56

Query  282  KNKIVTAFSEMDKRLVDGADEHLSILDLALR  312
            K +++    E++ RL +GA E L +  L   
Sbjct  57   KLELLEKLGEIEYRLSEGASEKLQLSALLAA  87


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 72.6 bits (179),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 59/152 (39%), Gaps = 39/152 (26%)

Query  1    MLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERG--IGIVREKVKG-FARTQ  57
            +L YGPPGTGKT+   A+AK L  P       +E++ S+     +G   ++++  F   +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAP------FIEISGSELVSKYVGESEKRLRELFEAAK  54

Query  58   LSQPTGLDSSYFEQYPCPPFKIIILDEADSM-----------TQDAQSALRRTMEQYSRI  106
               P                 +I +DE D++           ++   + L   ++ ++  
Sbjct  55   KLAPC----------------VIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSS  98

Query  107  TRFCLV---CNYVTRIIEPLASRCSKFRFKPL  135
                +V    N   ++   L  R  +    PL
Sbjct  99   NSKVIVIAATNRPDKLDPALLGRFDRIIEFPL  130



Lambda      K        H        a         alpha
   0.319    0.135    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00022018

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462513 pfam08542, Rep_fac_C, Replication factor C C-terminal ...  77.9    2e-19


>CDD:462513 pfam08542, Rep_fac_C, Replication factor C C-terminal domain. 
 This is the C-terminal domain of RFC (replication factor-C) 
protein of the clamp loader complex which binds to the DNA 
sliding clamp (proliferating cell nuclear antigen, PCNA). The 
five modules of RFC assemble into a right-handed spiral, 
which results in only three of the five RFC subunits (RFC-A, 
RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped 
gap between RFC-E and the PCNA clamp-loader complex. 
The C-terminal is vital for the correct orientation of RFC-E 
with respect to RFC-A.
Length=87

 Score = 77.9 bits (193),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (44%), Gaps = 4/91 (4%)

Query  135  VPESVIDRLIQAMQPKKLGSSYEAISTVVTDIVADGWSAGQLVLQLYRRIVYNDAIPDIQ  194
                 I+ ++ +          EA   V   +V  G+S   ++ QL+R +   D +P+  
Sbjct  1    PHPEDIEEILNSCLNGDFD---EAYKKVRELLVEKGYSLQDIITQLHRVVKSLD-LPEEV  56

Query  195  KNKIVTAFSEMDKRLVDGADEHLSILDLALR  225
            K +++    E++ RL +GA E L +  L   
Sbjct  57   KLELLEKLGEIEYRLSEGASEKLQLSALLAA  87



Lambda      K        H        a         alpha
   0.318    0.133    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00022019

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433132 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hyd...  115     8e-33
CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like               75.0    6e-18


>CDD:433132 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase. 
 This family is part of the HAD superfamily.
Length=101

 Score = 115 bits (290),  Expect = 8e-33, Method: Composition-based stats.
 Identities = 46/100 (46%), Positives = 60/100 (60%), Gaps = 4/100 (4%)

Query  25   FLFDCDGVLWSGDHLFPGTVETLEMLRSNGKQVVFVTNNSTKSRADYKKKLEKLGIPSTT  84
            FLFD DGVLW G    PG  E L  LR+ GK VVFVTNNS++SR +Y +KL KLG     
Sbjct  1    FLFDIDGVLWRGGEPIPGAAEALRALRAAGKPVVFVTNNSSRSREEYAEKLRKLGFDIDE  60

Query  85   EEIFSSSYSASIYISRILKLPENKRKVFVIGETGIEQELQ  124
            +EI     ++    +  LK  +  +KV VIG  G+ +EL+
Sbjct  61   DEII----TSGTAAADYLKERKFGKKVLVIGSEGLREELE  96


>CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like.  
Length=75

 Score = 75.0 bits (185),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 29/75 (39%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query  228  LGKPNQAMMDAIEGKFKFDRSRTCMVGDRANTDIRFGLEGKLGGTLGVLTGVSSKDDFLT  287
             GKPN  M++    +   D  RT M+GDR +TDI    E     T+ VLTGV+   D   
Sbjct  2    CGKPNPGMLERALARLGLDPERTVMIGDRLDTDILGAREAGA-RTILVLTGVTRPADLEK  60

Query  288  GPIRPSVYLDKLSDL  302
             PIRP   +D L++ 
Sbjct  61   APIRPDYVVDDLAEA  75



Lambda      K        H        a         alpha
   0.318    0.138    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00026887

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433132 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hyd...  115     8e-33
CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like               75.0    6e-18


>CDD:433132 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase. 
 This family is part of the HAD superfamily.
Length=101

 Score = 115 bits (290),  Expect = 8e-33, Method: Composition-based stats.
 Identities = 46/100 (46%), Positives = 60/100 (60%), Gaps = 4/100 (4%)

Query  25   FLFDCDGVLWSGDHLFPGTVETLEMLRSNGKQVVFVTNNSTKSRADYKKKLEKLGIPSTT  84
            FLFD DGVLW G    PG  E L  LR+ GK VVFVTNNS++SR +Y +KL KLG     
Sbjct  1    FLFDIDGVLWRGGEPIPGAAEALRALRAAGKPVVFVTNNSSRSREEYAEKLRKLGFDIDE  60

Query  85   EEIFSSSYSASIYISRILKLPENKRKVFVIGETGIEQELQ  124
            +EI     ++    +  LK  +  +KV VIG  G+ +EL+
Sbjct  61   DEII----TSGTAAADYLKERKFGKKVLVIGSEGLREELE  96


>CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like.  
Length=75

 Score = 75.0 bits (185),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 29/75 (39%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query  228  LGKPNQAMMDAIEGKFKFDRSRTCMVGDRANTDIRFGLEGKLGGTLGVLTGVSSKDDFLT  287
             GKPN  M++    +   D  RT M+GDR +TDI    E     T+ VLTGV+   D   
Sbjct  2    CGKPNPGMLERALARLGLDPERTVMIGDRLDTDILGAREAGA-RTILVLTGVTRPADLEK  60

Query  288  GPIRPSVYLDKLSDL  302
             PIRP   +D L++ 
Sbjct  61   APIRPDYVVDDLAEA  75



Lambda      K        H        a         alpha
   0.318    0.138    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00022020

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433132 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hyd...  104     2e-28
CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like               74.6    1e-17


>CDD:433132 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase. 
 This family is part of the HAD superfamily.
Length=101

 Score = 104 bits (261),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 46/118 (39%), Positives = 60/118 (51%), Gaps = 22/118 (19%)

Query  25   FLFDCDGVLWSGDHLFPGTVETLEMLRSNGMLAPAGEKVRARDSYQLGKQVVFVTNNSTK  84
            FLFD DGVLW G    PG  E L  LR+ G                  K VVFVTNNS++
Sbjct  1    FLFDIDGVLWRGGEPIPGAAEALRALRAAG------------------KPVVFVTNNSSR  42

Query  85   SRADYKKKLEKLGIPSTTEEIFSSSYSASIYISRILKLPENKRKVFVIGETGIEQELQ  142
            SR +Y +KL KLG     +EI     ++    +  LK  +  +KV VIG  G+ +EL+
Sbjct  43   SREEYAEKLRKLGFDIDEDEII----TSGTAAADYLKERKFGKKVLVIGSEGLREELE  96


>CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like.  
Length=75

 Score = 74.6 bits (184),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 29/75 (39%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query  246  LGKPNQAMMDAIEGKFKFDRSRTCMVGDRANTDIRFGLEGKLGGTLGVLTGVSSKDDFLT  305
             GKPN  M++    +   D  RT M+GDR +TDI    E     T+ VLTGV+   D   
Sbjct  2    CGKPNPGMLERALARLGLDPERTVMIGDRLDTDILGAREAGA-RTILVLTGVTRPADLEK  60

Query  306  GPIRPSVYLDKLSDL  320
             PIRP   +D L++ 
Sbjct  61   APIRPDYVVDDLAEA  75



Lambda      K        H        a         alpha
   0.318    0.138    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00022022

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430039 pfam08508, DUF1746, Fungal domain of unknown function ...  71.8    5e-17


>CDD:430039 pfam08508, DUF1746, Fungal domain of unknown function (DUF1746). 
 This is a fungal domain of unknown function.
Length=116

 Score = 71.8 bits (177),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 24/36 (67%), Positives = 27/36 (75%), Gaps = 0/36 (0%)

Query  1   MIFHNFFTHPEASEATRGYLHGGLLIDFIGQKAPIS  36
           ++ H  F  P A EATRGYLHGGL+IDFIGQK P S
Sbjct  63  LLLHLLFGLPSAGEATRGYLHGGLIIDFIGQKGPSS  98



Lambda      K        H        a         alpha
   0.319    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00022021

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430039 pfam08508, DUF1746, Fungal domain of unknown function ...  128     3e-38


>CDD:430039 pfam08508, DUF1746, Fungal domain of unknown function (DUF1746). 
 This is a fungal domain of unknown function.
Length=116

 Score = 128 bits (323),  Expect = 3e-38, Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 51/81 (63%), Gaps = 2/81 (2%)

Query  6   CSVILFAIRAIVQLIFFTPKAPPFDPT--RNQPFIGAIFVSNIFCMIFHNFFTHPEASEA  63
           CS     +RA VQL F TPK P F      N+P + AI  SN+ C++ H  F  P A EA
Sbjct  18  CSFFRLLLRAFVQLSFLTPKPPHFPEPLPANRPLLVAILGSNLLCLLLHLLFGLPSAGEA  77

Query  64  TRGYLHGGLLIDFIGQKAPIS  84
           TRGYLHGGL+IDFIGQK P S
Sbjct  78  TRGYLHGGLIIDFIGQKGPSS  98



Lambda      K        H        a         alpha
   0.322    0.138    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00022024

Length=106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463186 pfam10780, MRP_L53, 39S ribosomal protein L53/MRP-L53....  72.6    2e-19


>CDD:463186 pfam10780, MRP_L53, 39S ribosomal protein L53/MRP-L53.  MRP-L53 
is also known as Mrp144. It is part of the 39S ribosome.
Length=54

 Score = 72.6 bits (179),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 24/56 (43%), Positives = 32/56 (57%), Gaps = 2/56 (4%)

Query  15  FNPFSRSARPCRLLLSLLRNPSTTPASSPTHIDIQVTQLPRHSTQPPEMTVGFRGG  70
           FNPFS +A+  RL L+LL +P   PA+      I+   LP  ST PP + V F+ G
Sbjct  1   FNPFSPNAKSARLFLALLSSPP--PAARNPGCKIKTKVLPDTSTSPPTVKVTFKDG  54



Lambda      K        H        a         alpha
   0.317    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00022026

Length=106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463186 pfam10780, MRP_L53, 39S ribosomal protein L53/MRP-L53....  72.6    2e-19


>CDD:463186 pfam10780, MRP_L53, 39S ribosomal protein L53/MRP-L53.  MRP-L53 
is also known as Mrp144. It is part of the 39S ribosome.
Length=54

 Score = 72.6 bits (179),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 24/56 (43%), Positives = 32/56 (57%), Gaps = 2/56 (4%)

Query  15  FNPFSRSARPCRLLLSLLRNPSTTPASSPTHIDIQVTQLPRHSTQPPEMTVGFRGG  70
           FNPFS +A+  RL L+LL +P   PA+      I+   LP  ST PP + V F+ G
Sbjct  1   FNPFSPNAKSARLFLALLSSPP--PAARNPGCKIKTKVLPDTSTSPPTVKVTFKDG  54



Lambda      K        H        a         alpha
   0.317    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00022025

Length=106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463186 pfam10780, MRP_L53, 39S ribosomal protein L53/MRP-L53....  72.6    2e-19


>CDD:463186 pfam10780, MRP_L53, 39S ribosomal protein L53/MRP-L53.  MRP-L53 
is also known as Mrp144. It is part of the 39S ribosome.
Length=54

 Score = 72.6 bits (179),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 24/56 (43%), Positives = 32/56 (57%), Gaps = 2/56 (4%)

Query  15  FNPFSRSARPCRLLLSLLRNPSTTPASSPTHIDIQVTQLPRHSTQPPEMTVGFRGG  70
           FNPFS +A+  RL L+LL +P   PA+      I+   LP  ST PP + V F+ G
Sbjct  1   FNPFSPNAKSARLFLALLSSPP--PAARNPGCKIKTKVLPDTSTSPPTVKVTFKDG  54



Lambda      K        H        a         alpha
   0.317    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00022027

Length=451
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus). Members...  161     2e-46


>CDD:426126 pfam01207, Dus, Dihydrouridine synthase (Dus).  Members of this 
family catalyze the reduction of the 5,6-double bond of a 
uridine residue on tRNA. Dihydrouridine modification of tRNA 
is widely observed in prokaryotes and eukaryotes, and also 
in some archae. Most dihydrouridines are found in the D loop 
of t-RNAs. The role of dihydrouridine in tRNA is currently 
unknown, but may increase conformational flexibility of the 
tRNA. It is likely that different family members have different 
substrate specificities, which may overlap. Dus 1 from 
Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts 
on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single 
subunit, requiring NADPH or NADH, and is stimulated by 
the presence of FAD. Some family members may be targeted to 
the mitochondria and even have a role in mitochondria.
Length=309

 Score = 161 bits (409),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 92/351 (26%), Positives = 140/351 (40%), Gaps = 57/351 (16%)

Query  31   VLAPMVRSGELPSRLLALKYGA-DLVWGPETVDRSLIGATRRVNPRNGCIEYIRFPSNGG  89
            +LAPM    +LP R L  +YGA DLV+      ++ +   +                   
Sbjct  1    LLAPMAGVTDLPFRRLVREYGAGDLVYTEMVTAKAQLRPEKVR--------IRMLSEL--  50

Query  90   RPDKPAQESILYRIDPVREKGKLVFQIGSANPELAVEAAKLVA-GDVAGIDLNSGCPKPF  148
                              E   L  Q+G ++P L  EAAKLV      GID+N GCP   
Sbjct  51   -----------------EEPTPLAVQLGGSDPALLAEAAKLVEDRGADGIDINMGCPSKK  93

Query  149  STSGGMGAALLRTPDKLVSILESLVREVGNPYQIGISVKIRIL--ETPEKTESLVKRLVA  206
             T GG GAALLR PD +  I++++V+ VG P    ++VKIRI   ++ E    + K +  
Sbjct  94   VTRGGGGAALLRNPDLVAQIVKAVVKAVGIP----VTVKIRIGWDDSHENAVEIAKIVED  149

Query  207  TGITGLTVHCRTTPMRPRERAIRDQLAMIARICREAGVACVMNGDVTSRDEALALMKEFG  266
             G   LTVH RT   R +          I ++ +   +  + NGD+T  ++A   +   G
Sbjct  150  AGAQALTVHGRT---RAQNYEGTADWDAIKQVKQAVSIPVIANGDITDPEDAQRCLAYTG  206

Query  267  VDGAMIATAAEANPSCFRSE--AEGGLLPWREVVHDYLQAAIECENRFGNTKFLLNILIP  324
             DG MI   A  NP  F  +   + G       + +  +            +  L     
Sbjct  207  ADGVMIGRGALGNPWLFAEQHTVKTGEFGPSPPLAEEAEK---VLRHLPYLEEFL-----  258

Query  325  GKNREFKDAKTAKSYSDYCHFLKFDDLLPEAAQVDEILN-LTDKSVYKNNE  374
            G+++  + A   K  + Y          P AA++   LN + D      N 
Sbjct  259  GEDKGLRHA--RKHLAWYLK------GFPGAAELRRELNDVFDPVEALINL  301



Lambda      K        H        a         alpha
   0.317    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 553667144


Query= TCONS_00022028

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00022029

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        81.2    1e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 81.2 bits (201),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query  81   PKYYAACTVGGLLACGLTHTAVTPLDLVKCRRQVDSQLYKSN----MEAFRVIRNAEGIR  136
               + A  + G +A  +  T   PLD+VK R QV     KS     ++ F+ I   EGIR
Sbjct  2    ELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIR  61

Query  137  GVFTGWSPTFFGYSAQGAFKYGGYEFFKKFYSD  169
            G++ G  P     +   A  +G YE  K+    
Sbjct  62   GLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 72.3 bits (178),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query  184  YLAASASAEFIADVALCPFEAVKVRTQT---TIPPEFKGTFSGISQVIGKEGVAGLYKGL  240
             L A   A  IA     P + VK R Q    +   + +G      ++  +EG+ GLYKGL
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGL  67

Query  241  YPLWGRQIPYTMMKFASFETIVEAIYKKL  269
             P   R  P   + F ++ET+   + KKL
Sbjct  68   LPNLLRVAPAAAIYFGTYETLKRLLLKKL  96



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00026889

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        81.2    1e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 81.2 bits (201),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query  81   PKYYAACTVGGLLACGLTHTAVTPLDLVKCRRQVDSQLYKSN----MEAFRVIRNAEGIR  136
               + A  + G +A  +  T   PLD+VK R QV     KS     ++ F+ I   EGIR
Sbjct  2    ELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIR  61

Query  137  GVFTGWSPTFFGYSAQGAFKYGGYEFFKKFYSD  169
            G++ G  P     +   A  +G YE  K+    
Sbjct  62   GLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 72.3 bits (178),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query  184  YLAASASAEFIADVALCPFEAVKVRTQT---TIPPEFKGTFSGISQVIGKEGVAGLYKGL  240
             L A   A  IA     P + VK R Q    +   + +G      ++  +EG+ GLYKGL
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGL  67

Query  241  YPLWGRQIPYTMMKFASFETIVEAIYKKL  269
             P   R  P   + F ++ET+   + KKL
Sbjct  68   LPNLLRVAPAAAIYFGTYETLKRLLLKKL  96



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00026890

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        81.2    1e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 81.2 bits (201),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query  81   PKYYAACTVGGLLACGLTHTAVTPLDLVKCRRQVDSQLYKSN----MEAFRVIRNAEGIR  136
               + A  + G +A  +  T   PLD+VK R QV     KS     ++ F+ I   EGIR
Sbjct  2    ELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIR  61

Query  137  GVFTGWSPTFFGYSAQGAFKYGGYEFFKKFYSD  169
            G++ G  P     +   A  +G YE  K+    
Sbjct  62   GLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 72.3 bits (178),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query  184  YLAASASAEFIADVALCPFEAVKVRTQT---TIPPEFKGTFSGISQVIGKEGVAGLYKGL  240
             L A   A  IA     P + VK R Q    +   + +G      ++  +EG+ GLYKGL
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGL  67

Query  241  YPLWGRQIPYTMMKFASFETIVEAIYKKL  269
             P   R  P   + F ++ET+   + KKL
Sbjct  68   LPNLLRVAPAAAIYFGTYETLKRLLLKKL  96



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00026891

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        81.2    1e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 81.2 bits (201),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query  81   PKYYAACTVGGLLACGLTHTAVTPLDLVKCRRQVDSQLYKSN----MEAFRVIRNAEGIR  136
               + A  + G +A  +  T   PLD+VK R QV     KS     ++ F+ I   EGIR
Sbjct  2    ELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIR  61

Query  137  GVFTGWSPTFFGYSAQGAFKYGGYEFFKKFYSD  169
            G++ G  P     +   A  +G YE  K+    
Sbjct  62   GLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 72.3 bits (178),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query  184  YLAASASAEFIADVALCPFEAVKVRTQT---TIPPEFKGTFSGISQVIGKEGVAGLYKGL  240
             L A   A  IA     P + VK R Q    +   + +G      ++  +EG+ GLYKGL
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGL  67

Query  241  YPLWGRQIPYTMMKFASFETIVEAIYKKL  269
             P   R  P   + F ++ET+   + KKL
Sbjct  68   LPNLLRVAPAAAIYFGTYETLKRLLLKKL  96



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00022031

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        81.5    8e-20


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 81.5 bits (202),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query  81   PKYYAACTVGGLLACGLTHTAVTPLDLVKCRRQVDSQLYKSN----MEAFRVIRNAEGIR  136
               + A  + G +A  +  T   PLD+VK R QV     KS     ++ F+ I   EGIR
Sbjct  2    ELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIR  61

Query  137  GVFTGWSPTFFGYSAQGAFKYGGYEFFKKFYSD  169
            G++ G  P     +   A  +G YE  K+    
Sbjct  62   GLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 72.7 bits (179),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query  184  YLAASASAEFIADVALCPFEAVKVRTQT---TIPPEFKGTFSGISQVIGKEGVAGLYKGL  240
             L A   A  IA     P + VK R Q    +   + +G      ++  +EG+ GLYKGL
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGL  67

Query  241  YPLWGRQIPYTMMKFASFETIVEAIYKKL  269
             P   R  P   + F ++ET+   + KKL
Sbjct  68   LPNLLRVAPAAAIYFGTYETLKRLLLKKL  96



Lambda      K        H        a         alpha
   0.321    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00022030

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        81.2    1e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 81.2 bits (201),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query  81   PKYYAACTVGGLLACGLTHTAVTPLDLVKCRRQVDSQLYKSN----MEAFRVIRNAEGIR  136
               + A  + G +A  +  T   PLD+VK R QV     KS     ++ F+ I   EGIR
Sbjct  2    ELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIR  61

Query  137  GVFTGWSPTFFGYSAQGAFKYGGYEFFKKFYSD  169
            G++ G  P     +   A  +G YE  K+    
Sbjct  62   GLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 72.3 bits (178),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query  184  YLAASASAEFIADVALCPFEAVKVRTQT---TIPPEFKGTFSGISQVIGKEGVAGLYKGL  240
             L A   A  IA     P + VK R Q    +   + +G      ++  +EG+ GLYKGL
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGL  67

Query  241  YPLWGRQIPYTMMKFASFETIVEAIYKKL  269
             P   R  P   + F ++ET+   + KKL
Sbjct  68   LPNLLRVAPAAAIYFGTYETLKRLLLKKL  96



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00022033

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        72.7    1e-16


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 72.7 bits (179),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query  201  YLAASASAEFIADVALCPFEAVKVRTQT---TIPPEFKGTFSGISQVIGKEGVAGLYKGL  257
             L A   A  IA     P + VK R Q    +   + +G      ++  +EG+ GLYKGL
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGL  67

Query  258  YPLWGRQIPYTMMKFASFETIVEAIYKKL  286
             P   R  P   + F ++ET+   + KKL
Sbjct  68   LPNLLRVAPAAAIYFGTYETLKRLLLKKL  96



Lambda      K        H        a         alpha
   0.321    0.137    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0881    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00022035

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        81.2    1e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 81.2 bits (201),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query  81   PKYYAACTVGGLLACGLTHTAVTPLDLVKCRRQVDSQLYKSN----MEAFRVIRNAEGIR  136
               + A  + G +A  +  T   PLD+VK R QV     KS     ++ F+ I   EGIR
Sbjct  2    ELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIR  61

Query  137  GVFTGWSPTFFGYSAQGAFKYGGYEFFKKFYSD  169
            G++ G  P     +   A  +G YE  K+    
Sbjct  62   GLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 72.3 bits (178),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query  184  YLAASASAEFIADVALCPFEAVKVRTQT---TIPPEFKGTFSGISQVIGKEGVAGLYKGL  240
             L A   A  IA     P + VK R Q    +   + +G      ++  +EG+ GLYKGL
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGL  67

Query  241  YPLWGRQIPYTMMKFASFETIVEAIYKKL  269
             P   R  P   + F ++ET+   + KKL
Sbjct  68   LPNLLRVAPAAAIYFGTYETLKRLLLKKL  96



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00026892

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        79.6    3e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 79.6 bits (197),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query  81   PKYYAACTVGGLLACGLTHTAVTPLDLVKCRRQVDSQLYKSN----MEAFRVIRNAEGIR  136
               + A  + G +A  +  T   PLD+VK R QV     KS     ++ F+ I   EGIR
Sbjct  2    ELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIR  61

Query  137  GVFTGWSPTFFGYSVKGAFKYGGYEFFKKFYSD  169
            G++ G  P     +   A  +G YE  K+    
Sbjct  62   GLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 72.7 bits (179),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query  184  YLAASASAEFIADVALCPFEAVKVRTQT---TIPPEFKGTFSGISQVIGKEGVAGLYKGL  240
             L A   A  IA     P + VK R Q    +   + +G      ++  +EG+ GLYKGL
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGL  67

Query  241  YPLWGRQIPYTMMKFASFETIVEAIYKKL  269
             P   R  P   + F ++ET+   + KKL
Sbjct  68   LPNLLRVAPAAAIYFGTYETLKRLLLKKL  96



Lambda      K        H        a         alpha
   0.321    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00022034

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        83.1    3e-20


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 83.1 bits (206),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query  81   PKYYAACTVGGLLACGLTHTAVTPLDLVKCRRQVDSQLYKSN----MEAFRVIRNAEGIR  136
               + A  + G +A  +  T   PLD+VK R QV     KS     ++ F+ I   EGIR
Sbjct  2    ELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIR  61

Query  137  GVFTGWSPTFFGYSAQGAFKYGGYEFFKKFYSD  169
            G++ G  P     +   A  +G YE  K+    
Sbjct  62   GLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 74.2 bits (183),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query  184  YLAASASAEFIADVALCPFEAVKVRTQT---TIPPEFKGTFSGISQVIGKEGVAGLYKGL  240
             L A   A  IA     P + VK R Q    +   + +G      ++  +EG+ GLYKGL
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGL  67

Query  241  YPLWGRQIPYTMMKFASFETIVEAIYKKL  269
             P   R  P   + F ++ET+   + KKL
Sbjct  68   LPNLLRVAPAAAIYFGTYETLKRLLLKKL  96



Lambda      K        H        a         alpha
   0.321    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500176124


Query= TCONS_00022036

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        81.2    1e-19


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 81.2 bits (201),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query  81   PKYYAACTVGGLLACGLTHTAVTPLDLVKCRRQVDSQLYKSN----MEAFRVIRNAEGIR  136
               + A  + G +A  +  T   PLD+VK R QV     KS     ++ F+ I   EGIR
Sbjct  2    ELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIR  61

Query  137  GVFTGWSPTFFGYSAQGAFKYGGYEFFKKFYSD  169
            G++ G  P     +   A  +G YE  K+    
Sbjct  62   GLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 72.3 bits (178),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query  184  YLAASASAEFIADVALCPFEAVKVRTQT---TIPPEFKGTFSGISQVIGKEGVAGLYKGL  240
             L A   A  IA     P + VK R Q    +   + +G      ++  +EG+ GLYKGL
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGL  67

Query  241  YPLWGRQIPYTMMKFASFETIVEAIYKKL  269
             P   R  P   + F ++ET+   + KKL
Sbjct  68   LPNLLRVAPAAAIYFGTYETLKRLLLKKL  96



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00026893

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        81.5    8e-20


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 81.5 bits (202),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query  81   PKYYAACTVGGLLACGLTHTAVTPLDLVKCRRQVDSQLYKSN----MEAFRVIRNAEGIR  136
               + A  + G +A  +  T   PLD+VK R QV     KS     ++ F+ I   EGIR
Sbjct  2    ELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIR  61

Query  137  GVFTGWSPTFFGYSAQGAFKYGGYEFFKKFYSD  169
            G++ G  P     +   A  +G YE  K+    
Sbjct  62   GLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 72.7 bits (179),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query  184  YLAASASAEFIADVALCPFEAVKVRTQT---TIPPEFKGTFSGISQVIGKEGVAGLYKGL  240
             L A   A  IA     P + VK R Q    +   + +G      ++  +EG+ GLYKGL
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGL  67

Query  241  YPLWGRQIPYTMMKFASFETIVEAIYKKL  269
             P   R  P   + F ++ET+   + KKL
Sbjct  68   LPNLLRVAPAAAIYFGTYETLKRLLLKKL  96



Lambda      K        H        a         alpha
   0.321    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00022039

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00026895

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00022041

Length=132
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432408 pfam12223, DUF3602, Protein of unknown function (DUF36...  96.6    5e-28


>CDD:432408 pfam12223, DUF3602, Protein of unknown function (DUF3602).  This 
domain family is found in eukaryotes, and is typically between 
78 and 89 amino acids in length.
Length=80

 Score = 96.6 bits (241),  Expect = 5e-28, Method: Composition-based stats.
 Identities = 46/82 (56%), Positives = 50/82 (61%), Gaps = 6/82 (7%)

Query  17  NIGADPTQYVDAGIVREGPYGDQGDG---AYSAGRGGAGNIG-SPNVRPTSRVPHDAEII  72
           NIG D T Y D  IVR GP G   DG   A+S GRGGAGNI  SP  RPT     D ++ 
Sbjct  1   NIGPDDTVYTDGEIVRTGPQGSHTDGSRTAFSTGRGGAGNIHSSPGERPTLS--FDEDVE  58

Query  73  PELAIRKSTDENYHVGRGGQGN  94
           PE A RK   E+YHVGRGG GN
Sbjct  59  PEAARRKEDAEDYHVGRGGAGN  80



Lambda      K        H        a         alpha
   0.310    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00026896

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432408 pfam12223, DUF3602, Protein of unknown function (DUF36...  96.6    5e-28


>CDD:432408 pfam12223, DUF3602, Protein of unknown function (DUF3602).  This 
domain family is found in eukaryotes, and is typically between 
78 and 89 amino acids in length.
Length=80

 Score = 96.6 bits (241),  Expect = 5e-28, Method: Composition-based stats.
 Identities = 46/82 (56%), Positives = 50/82 (61%), Gaps = 6/82 (7%)

Query  17  NIGADPTQYVDAGIVREGPYGDQGDG---AYSAGRGGAGNIG-SPNVRPTSRVPHDAEII  72
           NIG D T Y D  IVR GP G   DG   A+S GRGGAGNI  SP  RPT     D ++ 
Sbjct  1   NIGPDDTVYTDGEIVRTGPQGSHTDGSRTAFSTGRGGAGNIHSSPGERPTLS--FDEDVE  58

Query  73  PELAIRKSTDENYHVGRGGQGN  94
           PE A RK   E+YHVGRGG GN
Sbjct  59  PEAARRKEDAEDYHVGRGGAGN  80



Lambda      K        H        a         alpha
   0.309    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00022042

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00022043

Length=22


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 72624728


Query= TCONS_00022044

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00022045

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00026897

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00022046

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00022047

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00022049

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, ...  490     5e-174
CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, ...  280     2e-93 


>CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal 
domain.  
Length=295

 Score = 490 bits (1263),  Expect = 5e-174, Method: Composition-based stats.
 Identities = 154/297 (52%), Positives = 204/297 (69%), Gaps = 13/297 (4%)

Query  205  LIMRFGNEFFNATWNRHHIDNVQITFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQVLTLL  264
            L++RF N  F   WNR++ID+VQIT  E  G EGRGGY+D+ G +RD++QNHLLQ+L L+
Sbjct  1    LVLRFANAIFEPLWNRNYIDHVQITVAETLGVEGRGGYYDQAGALRDMVQNHLLQLLALV  60

Query  265  AMERPISFSSEDIRDEKVRVLRAMDPIEP----KNVIIGQYGKSLDG--SKPAYKEDDTV  318
            AME P+SF +EDIRDEKV+VLR++ PI P     NV+ GQYG    G    P Y+E++ V
Sbjct  61   AMEPPVSFDAEDIRDEKVKVLRSLRPITPEDVEDNVVRGQYGAGWIGGEPVPGYREEEGV  120

Query  319  PKDSRCPTFCAMVAYIKNERWDGVPFILKAGKALNEQKTEIRIQFRDVTSGIFKD---IP  375
            P DSR  TF A+  +I N RW GVPF L+ GK L E+ TEIRIQF+DV   +F+D   +P
Sbjct  121  PPDSRTETFAALKLFIDNWRWAGVPFYLRTGKRLPERVTEIRIQFKDVPHNLFRDPGTLP  180

Query  376  RNELVIRVQPNESVYIKMNSKLPGLSMQTVMTELDLTYRRRFSDLKIPEAYESLILDALK  435
             NELVIR+QP+E +Y+K N+K+PGL M+    ELD +Y  RF + +IPEAYE L+LD ++
Sbjct  181  PNELVIRIQPDEGIYLKFNAKVPGLGMRLRPVELDFSYSDRFGE-RIPEAYERLLLDVMR  239

Query  436  GDHSNFVRDDELDASWKIFTPLLHYLDDNKEIIPMEYPYGSRGPAVLDDFTASFGYK  492
            GD + FVR DE++A+W+I  P+L   D+ K   P  YP GS GP   D+  A  G K
Sbjct  240  GDQTLFVRSDEVEAAWRIVDPILEAWDEEK---PPPYPAGSWGPKAADELLARDGRK  293


>CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, NAD binding 
domain.  
Length=178

 Score = 280 bits (718),  Expect = 2e-93, Method: Composition-based stats.
 Identities = 81/179 (45%), Positives = 119/179 (66%), Gaps = 2/179 (1%)

Query  26   VVLGASGDLAKKKTFPALFGLFRNKFLPKDIKIVGYARTKMDHEEFLKRVRSYIKVPTKE  85
            V+ GA+GDLAK+K FPAL+ L+R+  LP+  +I+G AR  +  EEF +RVR  +K   + 
Sbjct  1    VIFGATGDLAKRKLFPALYNLYRDGLLPEGFRIIGVARRDLSDEEFRERVREALKEFKEL  60

Query  86   IEEQLDSFCGLCTYISGQYDQDDSFINLRKHLEKVEKGHKEQNRVFYMALPPSVFTTVSE  145
             EE+ D F     Y+SG +D  +S+  L++ LE+ E      NR+FY+A+PPS+F  ++E
Sbjct  61   DEEKWDRFLERLHYVSGDFDDPESYEKLKERLEEHE-DETRGNRLFYLAVPPSLFGPIAE  119

Query  146  QLKRNCY-PKNGIARIIVEKPFGKDLQSSRDLQKALDPNWKEEEIFRIDHYLGKEMVKN  203
             L R     + G  R+++EKPFG DL+S+R+L   L   +KEE+I+RIDHYLGKE V+N
Sbjct  120  NLGRAGLSEEGGWRRVVIEKPFGHDLESARELNDQLAKVFKEEQIYRIDHYLGKETVQN  178



Lambda      K        H        a         alpha
   0.320    0.138    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 635907720


Query= TCONS_00022050

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, ...  278     7e-96
CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, ...  178     4e-55


>CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, NAD binding 
domain.  
Length=178

 Score = 278 bits (714),  Expect = 7e-96, Method: Composition-based stats.
 Identities = 81/179 (45%), Positives = 119/179 (66%), Gaps = 2/179 (1%)

Query  26   VVLGASGDLAKKKTFPALFGLFRNKFLPKDIKIVGYARTKMDHEEFLKRVRSYIKVPTKE  85
            V+ GA+GDLAK+K FPAL+ L+R+  LP+  +I+G AR  +  EEF +RVR  +K   + 
Sbjct  1    VIFGATGDLAKRKLFPALYNLYRDGLLPEGFRIIGVARRDLSDEEFRERVREALKEFKEL  60

Query  86   IEEQLDSFCGLCTYISGQYDQDDSFINLRKHLEKVEKGHKEQNRVFYMALPPSVFTTVSE  145
             EE+ D F     Y+SG +D  +S+  L++ LE+ E      NR+FY+A+PPS+F  ++E
Sbjct  61   DEEKWDRFLERLHYVSGDFDDPESYEKLKERLEEHE-DETRGNRLFYLAVPPSLFGPIAE  119

Query  146  QLKRNCY-PKNGIARIIVEKPFGKDLQSSRDLQKALDPNWKEEEIFRIDHYLGKEMVKN  203
             L R     + G  R+++EKPFG DL+S+R+L   L   +KEE+I+RIDHYLGKE V+N
Sbjct  120  NLGRAGLSEEGGWRRVVIEKPFGHDLESARELNDQLAKVFKEEQIYRIDHYLGKETVQN  178


>CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal 
domain.  
Length=295

 Score = 178 bits (455),  Expect = 4e-55, Method: Composition-based stats.
 Identities = 48/78 (62%), Positives = 62/78 (79%), Gaps = 0/78 (0%)

Query  205  LIMRFGNEFFNATWNRHHIDNVQITFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQVLTLL  264
            L++RF N  F   WNR++ID+VQIT  E  G EGRGGY+D+ G +RD++QNHLLQ+L L+
Sbjct  1    LVLRFANAIFEPLWNRNYIDHVQITVAETLGVEGRGGYYDQAGALRDMVQNHLLQLLALV  60

Query  265  AMERPISFSSEDIRDEKV  282
            AME P+SF +EDIRDEKV
Sbjct  61   AMEPPVSFDAEDIRDEKV  78



Lambda      K        H        a         alpha
   0.320    0.138    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00022051

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, ...  490     5e-174
CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, ...  280     2e-93 


>CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal 
domain.  
Length=295

 Score = 490 bits (1263),  Expect = 5e-174, Method: Composition-based stats.
 Identities = 154/297 (52%), Positives = 204/297 (69%), Gaps = 13/297 (4%)

Query  205  LIMRFGNEFFNATWNRHHIDNVQITFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQVLTLL  264
            L++RF N  F   WNR++ID+VQIT  E  G EGRGGY+D+ G +RD++QNHLLQ+L L+
Sbjct  1    LVLRFANAIFEPLWNRNYIDHVQITVAETLGVEGRGGYYDQAGALRDMVQNHLLQLLALV  60

Query  265  AMERPISFSSEDIRDEKVRVLRAMDPIEP----KNVIIGQYGKSLDG--SKPAYKEDDTV  318
            AME P+SF +EDIRDEKV+VLR++ PI P     NV+ GQYG    G    P Y+E++ V
Sbjct  61   AMEPPVSFDAEDIRDEKVKVLRSLRPITPEDVEDNVVRGQYGAGWIGGEPVPGYREEEGV  120

Query  319  PKDSRCPTFCAMVAYIKNERWDGVPFILKAGKALNEQKTEIRIQFRDVTSGIFKD---IP  375
            P DSR  TF A+  +I N RW GVPF L+ GK L E+ TEIRIQF+DV   +F+D   +P
Sbjct  121  PPDSRTETFAALKLFIDNWRWAGVPFYLRTGKRLPERVTEIRIQFKDVPHNLFRDPGTLP  180

Query  376  RNELVIRVQPNESVYIKMNSKLPGLSMQTVMTELDLTYRRRFSDLKIPEAYESLILDALK  435
             NELVIR+QP+E +Y+K N+K+PGL M+    ELD +Y  RF + +IPEAYE L+LD ++
Sbjct  181  PNELVIRIQPDEGIYLKFNAKVPGLGMRLRPVELDFSYSDRFGE-RIPEAYERLLLDVMR  239

Query  436  GDHSNFVRDDELDASWKIFTPLLHYLDDNKEIIPMEYPYGSRGPAVLDDFTASFGYK  492
            GD + FVR DE++A+W+I  P+L   D+ K   P  YP GS GP   D+  A  G K
Sbjct  240  GDQTLFVRSDEVEAAWRIVDPILEAWDEEK---PPPYPAGSWGPKAADELLARDGRK  293


>CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, NAD binding 
domain.  
Length=178

 Score = 280 bits (718),  Expect = 2e-93, Method: Composition-based stats.
 Identities = 81/179 (45%), Positives = 119/179 (66%), Gaps = 2/179 (1%)

Query  26   VVLGASGDLAKKKTFPALFGLFRNKFLPKDIKIVGYARTKMDHEEFLKRVRSYIKVPTKE  85
            V+ GA+GDLAK+K FPAL+ L+R+  LP+  +I+G AR  +  EEF +RVR  +K   + 
Sbjct  1    VIFGATGDLAKRKLFPALYNLYRDGLLPEGFRIIGVARRDLSDEEFRERVREALKEFKEL  60

Query  86   IEEQLDSFCGLCTYISGQYDQDDSFINLRKHLEKVEKGHKEQNRVFYMALPPSVFTTVSE  145
             EE+ D F     Y+SG +D  +S+  L++ LE+ E      NR+FY+A+PPS+F  ++E
Sbjct  61   DEEKWDRFLERLHYVSGDFDDPESYEKLKERLEEHE-DETRGNRLFYLAVPPSLFGPIAE  119

Query  146  QLKRNCY-PKNGIARIIVEKPFGKDLQSSRDLQKALDPNWKEEEIFRIDHYLGKEMVKN  203
             L R     + G  R+++EKPFG DL+S+R+L   L   +KEE+I+RIDHYLGKE V+N
Sbjct  120  NLGRAGLSEEGGWRRVVIEKPFGHDLESARELNDQLAKVFKEEQIYRIDHYLGKETVQN  178



Lambda      K        H        a         alpha
   0.320    0.138    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 635907720


Query= TCONS_00022052

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, ...  489     6e-174
CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, ...  279     3e-93 


>CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal 
domain.  
Length=295

 Score = 489 bits (1261),  Expect = 6e-174, Method: Composition-based stats.
 Identities = 154/297 (52%), Positives = 204/297 (69%), Gaps = 13/297 (4%)

Query  196  LIMRFGNEFFNATWNRHHIDNVQITFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQVLTLL  255
            L++RF N  F   WNR++ID+VQIT  E  G EGRGGY+D+ G +RD++QNHLLQ+L L+
Sbjct  1    LVLRFANAIFEPLWNRNYIDHVQITVAETLGVEGRGGYYDQAGALRDMVQNHLLQLLALV  60

Query  256  AMERPISFSSEDIRDEKVRVLRAMDPIEP----KNVIIGQYGKSLDG--SKPAYKEDDTV  309
            AME P+SF +EDIRDEKV+VLR++ PI P     NV+ GQYG    G    P Y+E++ V
Sbjct  61   AMEPPVSFDAEDIRDEKVKVLRSLRPITPEDVEDNVVRGQYGAGWIGGEPVPGYREEEGV  120

Query  310  PKDSRCPTFCAMVAYIKNERWDGVPFILKAGKALNEQKTEIRIQFRDVTSGIFKD---IP  366
            P DSR  TF A+  +I N RW GVPF L+ GK L E+ TEIRIQF+DV   +F+D   +P
Sbjct  121  PPDSRTETFAALKLFIDNWRWAGVPFYLRTGKRLPERVTEIRIQFKDVPHNLFRDPGTLP  180

Query  367  RNELVIRVQPNESVYIKMNSKLPGLSMQTVMTELDLTYRRRFSDLKIPEAYESLILDALK  426
             NELVIR+QP+E +Y+K N+K+PGL M+    ELD +Y  RF + +IPEAYE L+LD ++
Sbjct  181  PNELVIRIQPDEGIYLKFNAKVPGLGMRLRPVELDFSYSDRFGE-RIPEAYERLLLDVMR  239

Query  427  GDHSNFVRDDELDASWKIFTPLLHYLDDNKEIIPMEYPYGSRGPAVLDDFTASFGYK  483
            GD + FVR DE++A+W+I  P+L   D+ K   P  YP GS GP   D+  A  G K
Sbjct  240  GDQTLFVRSDEVEAAWRIVDPILEAWDEEK---PPPYPAGSWGPKAADELLARDGRK  293


>CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, NAD binding 
domain.  
Length=178

 Score = 279 bits (716),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 81/179 (45%), Positives = 119/179 (66%), Gaps = 2/179 (1%)

Query  17   VVLGASGDLAKKKTFPALFGLFRNKFLPKDIKIVGYARTKMDHEEFLKRVRSYIKVPTKE  76
            V+ GA+GDLAK+K FPAL+ L+R+  LP+  +I+G AR  +  EEF +RVR  +K   + 
Sbjct  1    VIFGATGDLAKRKLFPALYNLYRDGLLPEGFRIIGVARRDLSDEEFRERVREALKEFKEL  60

Query  77   IEEQLDSFCGLCTYISGQYDQDDSFINLRKHLEKVEKGHKEQNRVFYMALPPSVFTTVSE  136
             EE+ D F     Y+SG +D  +S+  L++ LE+ E      NR+FY+A+PPS+F  ++E
Sbjct  61   DEEKWDRFLERLHYVSGDFDDPESYEKLKERLEEHE-DETRGNRLFYLAVPPSLFGPIAE  119

Query  137  QLKRNCY-PKNGIARIIVEKPFGKDLQSSRDLQKALDPNWKEEEIFRIDHYLGKEMVKN  194
             L R     + G  R+++EKPFG DL+S+R+L   L   +KEE+I+RIDHYLGKE V+N
Sbjct  120  NLGRAGLSEEGGWRRVVIEKPFGHDLESARELNDQLAKVFKEEQIYRIDHYLGKETVQN  178



Lambda      K        H        a         alpha
   0.320    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00026898

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, ...  280     1e-95
CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, ...  284     1e-95


>CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, NAD binding 
domain.  
Length=178

 Score = 280 bits (718),  Expect = 1e-95, Method: Composition-based stats.
 Identities = 81/179 (45%), Positives = 119/179 (66%), Gaps = 2/179 (1%)

Query  26   VVLGASGDLAKKKTFPALFGLFRNKFLPKDIKIVGYARTKMDHEEFLKRVRSYIKVPTKE  85
            V+ GA+GDLAK+K FPAL+ L+R+  LP+  +I+G AR  +  EEF +RVR  +K   + 
Sbjct  1    VIFGATGDLAKRKLFPALYNLYRDGLLPEGFRIIGVARRDLSDEEFRERVREALKEFKEL  60

Query  86   IEEQLDSFCGLCTYISGQYDQDDSFINLRKHLEKVEKGHKEQNRVFYMALPPSVFTTVSE  145
             EE+ D F     Y+SG +D  +S+  L++ LE+ E      NR+FY+A+PPS+F  ++E
Sbjct  61   DEEKWDRFLERLHYVSGDFDDPESYEKLKERLEEHE-DETRGNRLFYLAVPPSLFGPIAE  119

Query  146  QLKRNCY-PKNGIARIIVEKPFGKDLQSSRDLQKALDPNWKEEEIFRIDHYLGKEMVKN  203
             L R     + G  R+++EKPFG DL+S+R+L   L   +KEE+I+RIDHYLGKE V+N
Sbjct  120  NLGRAGLSEEGGWRRVVIEKPFGHDLESARELNDQLAKVFKEEQIYRIDHYLGKETVQN  178


>CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal 
domain.  
Length=295

 Score = 284 bits (729),  Expect = 1e-95, Method: Composition-based stats.
 Identities = 83/152 (55%), Positives = 107/152 (70%), Gaps = 6/152 (4%)

Query  205  LIMRFGNEFFNATWNRHHIDNVQITFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQVLTLL  264
            L++RF N  F   WNR++ID+VQIT  E  G EGRGGY+D+ G +RD++QNHLLQ+L L+
Sbjct  1    LVLRFANAIFEPLWNRNYIDHVQITVAETLGVEGRGGYYDQAGALRDMVQNHLLQLLALV  60

Query  265  AMERPISFSSEDIRDEKVRVLRAMDPIEP----KNVIIGQYGKSLDG--SKPAYKEDDTV  318
            AME P+SF +EDIRDEKV+VLR++ PI P     NV+ GQYG    G    P Y+E++ V
Sbjct  61   AMEPPVSFDAEDIRDEKVKVLRSLRPITPEDVEDNVVRGQYGAGWIGGEPVPGYREEEGV  120

Query  319  PKDSRCPTFCAMVAYIKNERWDGVPFILKAGK  350
            P DSR  TF A+  +I N RW GVPF L+ GK
Sbjct  121  PPDSRTETFAALKLFIDNWRWAGVPFYLRTGK  152



Lambda      K        H        a         alpha
   0.320    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00022053

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, ...  283     3e-95
CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, ...  278     4e-95


>CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal 
domain.  
Length=295

 Score = 283 bits (728),  Expect = 3e-95, Method: Composition-based stats.
 Identities = 83/152 (55%), Positives = 107/152 (70%), Gaps = 6/152 (4%)

Query  196  LIMRFGNEFFNATWNRHHIDNVQITFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQVLTLL  255
            L++RF N  F   WNR++ID+VQIT  E  G EGRGGY+D+ G +RD++QNHLLQ+L L+
Sbjct  1    LVLRFANAIFEPLWNRNYIDHVQITVAETLGVEGRGGYYDQAGALRDMVQNHLLQLLALV  60

Query  256  AMERPISFSSEDIRDEKVRVLRAMDPIEP----KNVIIGQYGKSLDG--SKPAYKEDDTV  309
            AME P+SF +EDIRDEKV+VLR++ PI P     NV+ GQYG    G    P Y+E++ V
Sbjct  61   AMEPPVSFDAEDIRDEKVKVLRSLRPITPEDVEDNVVRGQYGAGWIGGEPVPGYREEEGV  120

Query  310  PKDSRCPTFCAMVAYIKNERWDGVPFILKAGK  341
            P DSR  TF A+  +I N RW GVPF L+ GK
Sbjct  121  PPDSRTETFAALKLFIDNWRWAGVPFYLRTGK  152


>CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, NAD binding 
domain.  
Length=178

 Score = 278 bits (715),  Expect = 4e-95, Method: Composition-based stats.
 Identities = 81/179 (45%), Positives = 119/179 (66%), Gaps = 2/179 (1%)

Query  17   VVLGASGDLAKKKTFPALFGLFRNKFLPKDIKIVGYARTKMDHEEFLKRVRSYIKVPTKE  76
            V+ GA+GDLAK+K FPAL+ L+R+  LP+  +I+G AR  +  EEF +RVR  +K   + 
Sbjct  1    VIFGATGDLAKRKLFPALYNLYRDGLLPEGFRIIGVARRDLSDEEFRERVREALKEFKEL  60

Query  77   IEEQLDSFCGLCTYISGQYDQDDSFINLRKHLEKVEKGHKEQNRVFYMALPPSVFTTVSE  136
             EE+ D F     Y+SG +D  +S+  L++ LE+ E      NR+FY+A+PPS+F  ++E
Sbjct  61   DEEKWDRFLERLHYVSGDFDDPESYEKLKERLEEHE-DETRGNRLFYLAVPPSLFGPIAE  119

Query  137  QLKRNCY-PKNGIARIIVEKPFGKDLQSSRDLQKALDPNWKEEEIFRIDHYLGKEMVKN  194
             L R     + G  R+++EKPFG DL+S+R+L   L   +KEE+I+RIDHYLGKE V+N
Sbjct  120  NLGRAGLSEEGGWRRVVIEKPFGHDLESARELNDQLAKVFKEEQIYRIDHYLGKETVQN  178



Lambda      K        H        a         alpha
   0.321    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00022054

Length=434
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, ...  428     4e-151
CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, ...  278     5e-94 


>CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal 
domain.  
Length=295

 Score = 428 bits (1104),  Expect = 4e-151, Method: Composition-based stats.
 Identities = 134/248 (54%), Positives = 177/248 (71%), Gaps = 10/248 (4%)

Query  196  LIMRFGNEFFNATWNRHHIDNVQITFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQVLTLL  255
            L++RF N  F   WNR++ID+VQIT  E  G EGRGGY+D+ G +RD++QNHLLQ+L L+
Sbjct  1    LVLRFANAIFEPLWNRNYIDHVQITVAETLGVEGRGGYYDQAGALRDMVQNHLLQLLALV  60

Query  256  AMERPISFSSEDIRDEKVRVLRAMDPIEP----KNVIIGQYGKSLDG--SKPAYKEDDTV  309
            AME P+SF +EDIRDEKV+VLR++ PI P     NV+ GQYG    G    P Y+E++ V
Sbjct  61   AMEPPVSFDAEDIRDEKVKVLRSLRPITPEDVEDNVVRGQYGAGWIGGEPVPGYREEEGV  120

Query  310  PKDSRCPTFCAMVAYIKNERWDGVPFILKAGKALNEQKTEIRIQFRDVTSGIFKD---IP  366
            P DSR  TF A+  +I N RW GVPF L+ GK L E+ TEIRIQF+DV   +F+D   +P
Sbjct  121  PPDSRTETFAALKLFIDNWRWAGVPFYLRTGKRLPERVTEIRIQFKDVPHNLFRDPGTLP  180

Query  367  RNELVIRVQPNESVYIKMNSKLPGLSMQTVMTELDLTYRRRFSDLKIPEAYESLILDALK  426
             NELVIR+QP+E +Y+K N+K+PGL M+    ELD +Y  RF + +IPEAYE L+LD ++
Sbjct  181  PNELVIRIQPDEGIYLKFNAKVPGLGMRLRPVELDFSYSDRFGE-RIPEAYERLLLDVMR  239

Query  427  GDHSNFVR  434
            GD + FVR
Sbjct  240  GDQTLFVR  247


>CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, NAD binding 
domain.  
Length=178

 Score = 278 bits (715),  Expect = 5e-94, Method: Composition-based stats.
 Identities = 81/179 (45%), Positives = 119/179 (66%), Gaps = 2/179 (1%)

Query  17   VVLGASGDLAKKKTFPALFGLFRNKFLPKDIKIVGYARTKMDHEEFLKRVRSYIKVPTKE  76
            V+ GA+GDLAK+K FPAL+ L+R+  LP+  +I+G AR  +  EEF +RVR  +K   + 
Sbjct  1    VIFGATGDLAKRKLFPALYNLYRDGLLPEGFRIIGVARRDLSDEEFRERVREALKEFKEL  60

Query  77   IEEQLDSFCGLCTYISGQYDQDDSFINLRKHLEKVEKGHKEQNRVFYMALPPSVFTTVSE  136
             EE+ D F     Y+SG +D  +S+  L++ LE+ E      NR+FY+A+PPS+F  ++E
Sbjct  61   DEEKWDRFLERLHYVSGDFDDPESYEKLKERLEEHE-DETRGNRLFYLAVPPSLFGPIAE  119

Query  137  QLKRNCY-PKNGIARIIVEKPFGKDLQSSRDLQKALDPNWKEEEIFRIDHYLGKEMVKN  194
             L R     + G  R+++EKPFG DL+S+R+L   L   +KEE+I+RIDHYLGKE V+N
Sbjct  120  NLGRAGLSEEGGWRRVVIEKPFGHDLESARELNDQLAKVFKEEQIYRIDHYLGKETVQN  178



Lambda      K        H        a         alpha
   0.321    0.139    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 527594176


Query= TCONS_00026899

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, ...  277     1e-95
CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, ...  178     5e-55


>CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, NAD binding 
domain.  
Length=178

 Score = 277 bits (711),  Expect = 1e-95, Method: Composition-based stats.
 Identities = 81/179 (45%), Positives = 119/179 (66%), Gaps = 2/179 (1%)

Query  17   VVLGASGDLAKKKTFPALFGLFRNKFLPKDIKIVGYARTKMDHEEFLKRVRSYIKVPTKE  76
            V+ GA+GDLAK+K FPAL+ L+R+  LP+  +I+G AR  +  EEF +RVR  +K   + 
Sbjct  1    VIFGATGDLAKRKLFPALYNLYRDGLLPEGFRIIGVARRDLSDEEFRERVREALKEFKEL  60

Query  77   IEEQLDSFCGLCTYISGQYDQDDSFINLRKHLEKVEKGHKEQNRVFYMALPPSVFTTVSE  136
             EE+ D F     Y+SG +D  +S+  L++ LE+ E      NR+FY+A+PPS+F  ++E
Sbjct  61   DEEKWDRFLERLHYVSGDFDDPESYEKLKERLEEHE-DETRGNRLFYLAVPPSLFGPIAE  119

Query  137  QLKRNCY-PKNGIARIIVEKPFGKDLQSSRDLQKALDPNWKEEEIFRIDHYLGKEMVKN  194
             L R     + G  R+++EKPFG DL+S+R+L   L   +KEE+I+RIDHYLGKE V+N
Sbjct  120  NLGRAGLSEEGGWRRVVIEKPFGHDLESARELNDQLAKVFKEEQIYRIDHYLGKETVQN  178


>CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal 
domain.  
Length=295

 Score = 178 bits (453),  Expect = 5e-55, Method: Composition-based stats.
 Identities = 48/78 (62%), Positives = 62/78 (79%), Gaps = 0/78 (0%)

Query  196  LIMRFGNEFFNATWNRHHIDNVQITFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQVLTLL  255
            L++RF N  F   WNR++ID+VQIT  E  G EGRGGY+D+ G +RD++QNHLLQ+L L+
Sbjct  1    LVLRFANAIFEPLWNRNYIDHVQITVAETLGVEGRGGYYDQAGALRDMVQNHLLQLLALV  60

Query  256  AMERPISFSSEDIRDEKV  273
            AME P+SF +EDIRDEKV
Sbjct  61   AMEPPVSFDAEDIRDEKV  78



Lambda      K        H        a         alpha
   0.321    0.139    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00022055

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, ...  277     1e-95
CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, ...  178     5e-55


>CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, NAD binding 
domain.  
Length=178

 Score = 277 bits (711),  Expect = 1e-95, Method: Composition-based stats.
 Identities = 81/179 (45%), Positives = 119/179 (66%), Gaps = 2/179 (1%)

Query  17   VVLGASGDLAKKKTFPALFGLFRNKFLPKDIKIVGYARTKMDHEEFLKRVRSYIKVPTKE  76
            V+ GA+GDLAK+K FPAL+ L+R+  LP+  +I+G AR  +  EEF +RVR  +K   + 
Sbjct  1    VIFGATGDLAKRKLFPALYNLYRDGLLPEGFRIIGVARRDLSDEEFRERVREALKEFKEL  60

Query  77   IEEQLDSFCGLCTYISGQYDQDDSFINLRKHLEKVEKGHKEQNRVFYMALPPSVFTTVSE  136
             EE+ D F     Y+SG +D  +S+  L++ LE+ E      NR+FY+A+PPS+F  ++E
Sbjct  61   DEEKWDRFLERLHYVSGDFDDPESYEKLKERLEEHE-DETRGNRLFYLAVPPSLFGPIAE  119

Query  137  QLKRNCY-PKNGIARIIVEKPFGKDLQSSRDLQKALDPNWKEEEIFRIDHYLGKEMVKN  194
             L R     + G  R+++EKPFG DL+S+R+L   L   +KEE+I+RIDHYLGKE V+N
Sbjct  120  NLGRAGLSEEGGWRRVVIEKPFGHDLESARELNDQLAKVFKEEQIYRIDHYLGKETVQN  178


>CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal 
domain.  
Length=295

 Score = 178 bits (453),  Expect = 5e-55, Method: Composition-based stats.
 Identities = 48/78 (62%), Positives = 62/78 (79%), Gaps = 0/78 (0%)

Query  196  LIMRFGNEFFNATWNRHHIDNVQITFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQVLTLL  255
            L++RF N  F   WNR++ID+VQIT  E  G EGRGGY+D+ G +RD++QNHLLQ+L L+
Sbjct  1    LVLRFANAIFEPLWNRNYIDHVQITVAETLGVEGRGGYYDQAGALRDMVQNHLLQLLALV  60

Query  256  AMERPISFSSEDIRDEKV  273
            AME P+SF +EDIRDEKV
Sbjct  61   AMEPPVSFDAEDIRDEKV  78



Lambda      K        H        a         alpha
   0.321    0.139    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00026900

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, ...  353     3e-122
CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, ...  279     8e-95 


>CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal 
domain.  
Length=295

 Score = 353 bits (909),  Expect = 3e-122, Method: Composition-based stats.
 Identities = 109/201 (54%), Positives = 144/201 (72%), Gaps = 9/201 (4%)

Query  196  LIMRFGNEFFNATWNRHHIDNVQITFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQVLTLL  255
            L++RF N  F   WNR++ID+VQIT  E  G EGRGGY+D+ G +RD++QNHLLQ+L L+
Sbjct  1    LVLRFANAIFEPLWNRNYIDHVQITVAETLGVEGRGGYYDQAGALRDMVQNHLLQLLALV  60

Query  256  AMERPISFSSEDIRDEKVRVLRAMDPIEP----KNVIIGQYGKSLDG--SKPAYKEDDTV  309
            AME P+SF +EDIRDEKV+VLR++ PI P     NV+ GQYG    G    P Y+E++ V
Sbjct  61   AMEPPVSFDAEDIRDEKVKVLRSLRPITPEDVEDNVVRGQYGAGWIGGEPVPGYREEEGV  120

Query  310  PKDSRCPTFCAMVAYIKNERWDGVPFILKAGKGINEQKTEIRIQFRDVTSGIFKD---IP  366
            P DSR  TF A+  +I N RW GVPF L+ GK + E+ TEIRIQF+DV   +F+D   +P
Sbjct  121  PPDSRTETFAALKLFIDNWRWAGVPFYLRTGKRLPERVTEIRIQFKDVPHNLFRDPGTLP  180

Query  367  RNELVIRVQPNESVYIKMNSK  387
             NELVIR+QP+E +Y+K N+K
Sbjct  181  PNELVIRIQPDEGIYLKFNAK  201


>CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, NAD binding 
domain.  
Length=178

 Score = 279 bits (716),  Expect = 8e-95, Method: Composition-based stats.
 Identities = 81/179 (45%), Positives = 119/179 (66%), Gaps = 2/179 (1%)

Query  17   VVLGASGDLAKKKTFPALFGLFRNKFLPKDIKIVGYARTKMDHEEFLKRVRSYIKVPTKE  76
            V+ GA+GDLAK+K FPAL+ L+R+  LP+  +I+G AR  +  EEF +RVR  +K   + 
Sbjct  1    VIFGATGDLAKRKLFPALYNLYRDGLLPEGFRIIGVARRDLSDEEFRERVREALKEFKEL  60

Query  77   IEEQLDSFCGLCTYISGQYDQDDSFINLRKHLEKVEKGHKEQNRVFYMALPPSVFTTVSE  136
             EE+ D F     Y+SG +D  +S+  L++ LE+ E      NR+FY+A+PPS+F  ++E
Sbjct  61   DEEKWDRFLERLHYVSGDFDDPESYEKLKERLEEHE-DETRGNRLFYLAVPPSLFGPIAE  119

Query  137  QLKRNCY-PKNGIARIIVEKPFGKDLQSSRDLQKALDPNWKEEEIFRIDHYLGKEMVKN  194
             L R     + G  R+++EKPFG DL+S+R+L   L   +KEE+I+RIDHYLGKE V+N
Sbjct  120  NLGRAGLSEEGGWRRVVIEKPFGHDLESARELNDQLAKVFKEEQIYRIDHYLGKETVQN  178



Lambda      K        H        a         alpha
   0.321    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00022056

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, ...  489     6e-174
CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, ...  279     3e-93 


>CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal 
domain.  
Length=295

 Score = 489 bits (1261),  Expect = 6e-174, Method: Composition-based stats.
 Identities = 154/297 (52%), Positives = 204/297 (69%), Gaps = 13/297 (4%)

Query  196  LIMRFGNEFFNATWNRHHIDNVQITFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQVLTLL  255
            L++RF N  F   WNR++ID+VQIT  E  G EGRGGY+D+ G +RD++QNHLLQ+L L+
Sbjct  1    LVLRFANAIFEPLWNRNYIDHVQITVAETLGVEGRGGYYDQAGALRDMVQNHLLQLLALV  60

Query  256  AMERPISFSSEDIRDEKVRVLRAMDPIEP----KNVIIGQYGKSLDG--SKPAYKEDDTV  309
            AME P+SF +EDIRDEKV+VLR++ PI P     NV+ GQYG    G    P Y+E++ V
Sbjct  61   AMEPPVSFDAEDIRDEKVKVLRSLRPITPEDVEDNVVRGQYGAGWIGGEPVPGYREEEGV  120

Query  310  PKDSRCPTFCAMVAYIKNERWDGVPFILKAGKALNEQKTEIRIQFRDVTSGIFKD---IP  366
            P DSR  TF A+  +I N RW GVPF L+ GK L E+ TEIRIQF+DV   +F+D   +P
Sbjct  121  PPDSRTETFAALKLFIDNWRWAGVPFYLRTGKRLPERVTEIRIQFKDVPHNLFRDPGTLP  180

Query  367  RNELVIRVQPNESVYIKMNSKLPGLSMQTVMTELDLTYRRRFSDLKIPEAYESLILDALK  426
             NELVIR+QP+E +Y+K N+K+PGL M+    ELD +Y  RF + +IPEAYE L+LD ++
Sbjct  181  PNELVIRIQPDEGIYLKFNAKVPGLGMRLRPVELDFSYSDRFGE-RIPEAYERLLLDVMR  239

Query  427  GDHSNFVRDDELDASWKIFTPLLHYLDDNKEIIPMEYPYGSRGPAVLDDFTASFGYK  483
            GD + FVR DE++A+W+I  P+L   D+ K   P  YP GS GP   D+  A  G K
Sbjct  240  GDQTLFVRSDEVEAAWRIVDPILEAWDEEK---PPPYPAGSWGPKAADELLARDGRK  293


>CDD:459827 pfam00479, G6PD_N, Glucose-6-phosphate dehydrogenase, NAD binding 
domain.  
Length=178

 Score = 279 bits (716),  Expect = 3e-93, Method: Composition-based stats.
 Identities = 81/179 (45%), Positives = 119/179 (66%), Gaps = 2/179 (1%)

Query  17   VVLGASGDLAKKKTFPALFGLFRNKFLPKDIKIVGYARTKMDHEEFLKRVRSYIKVPTKE  76
            V+ GA+GDLAK+K FPAL+ L+R+  LP+  +I+G AR  +  EEF +RVR  +K   + 
Sbjct  1    VIFGATGDLAKRKLFPALYNLYRDGLLPEGFRIIGVARRDLSDEEFRERVREALKEFKEL  60

Query  77   IEEQLDSFCGLCTYISGQYDQDDSFINLRKHLEKVEKGHKEQNRVFYMALPPSVFTTVSE  136
             EE+ D F     Y+SG +D  +S+  L++ LE+ E      NR+FY+A+PPS+F  ++E
Sbjct  61   DEEKWDRFLERLHYVSGDFDDPESYEKLKERLEEHE-DETRGNRLFYLAVPPSLFGPIAE  119

Query  137  QLKRNCY-PKNGIARIIVEKPFGKDLQSSRDLQKALDPNWKEEEIFRIDHYLGKEMVKN  194
             L R     + G  R+++EKPFG DL+S+R+L   L   +KEE+I+RIDHYLGKE V+N
Sbjct  120  NLGRAGLSEEGGWRRVVIEKPFGHDLESARELNDQLAKVFKEEQIYRIDHYLGKETVQN  178



Lambda      K        H        a         alpha
   0.320    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00026901

Length=224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, ...  306     3e-106


>CDD:460694 pfam02781, G6PD_C, Glucose-6-phosphate dehydrogenase, C-terminal 
domain.  
Length=295

 Score = 306 bits (786),  Expect = 3e-106, Method: Composition-based stats.
 Identities = 103/214 (48%), Positives = 137/214 (64%), Gaps = 13/214 (6%)

Query  1    MDPIEP----KNVIIGQYGKSLDG--SKPAYKEDDTVPKDSRCPTFCAMVAYIKNERWDG  54
            + PI P     NV+ GQYG    G    P Y+E++ VP DSR  TF A+  +I N RW G
Sbjct  84   LRPITPEDVEDNVVRGQYGAGWIGGEPVPGYREEEGVPPDSRTETFAALKLFIDNWRWAG  143

Query  55   VPFILKAGKALNEQKTEIRIQFRDVTSGIFKD---IPRNELVIRVQPNESVYIKMNSKLP  111
            VPF L+ GK L E+ TEIRIQF+DV   +F+D   +P NELVIR+QP+E +Y+K N+K+P
Sbjct  144  VPFYLRTGKRLPERVTEIRIQFKDVPHNLFRDPGTLPPNELVIRIQPDEGIYLKFNAKVP  203

Query  112  GLSMQTVMTELDLTYRRRFSDLKIPEAYESLILDALKGDHSNFVRDDELDASWKIFTPLL  171
            GL M+    ELD +Y  RF + +IPEAYE L+LD ++GD + FVR DE++A+W+I  P+L
Sbjct  204  GLGMRLRPVELDFSYSDRFGE-RIPEAYERLLLDVMRGDQTLFVRSDEVEAAWRIVDPIL  262

Query  172  HYLDDNKEIIPMEYPYGSRGPAVLDDFTASFGYK  205
               D+ K   P  YP GS GP   D+  A  G K
Sbjct  263  EAWDEEK---PPPYPAGSWGPKAADELLARDGRK  293



Lambda      K        H        a         alpha
   0.318    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00022057

Length=563


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 703875588


Query= TCONS_00022058

Length=563


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 703875588


Query= TCONS_00026903

Length=453


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00026902

Length=471


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00026904

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0828    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00022059

Length=391


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00022060

Length=473


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 587408632


Query= TCONS_00022061

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00026906

Length=287


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00026907

Length=539


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 678301568


Query= TCONS_00026905

Length=539


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 678301568


Query= TCONS_00026908

Length=471


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00022063

Length=524


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00022062

Length=565


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 706864444


Query= TCONS_00022064

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00026909

Length=471


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00026910

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00022065

Length=287


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00022066

Length=467


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 578206408


Query= TCONS_00022067

Length=743
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429827 pfam08101, DUF1708, Domain of unknown function (DUF170...  234     4e-70


>CDD:429827 pfam08101, DUF1708, Domain of unknown function (DUF1708).  This 
is a yeast domain of unknown function.
Length=423

 Score = 234 bits (598),  Expect = 4e-70, Method: Composition-based stats.
 Identities = 105/246 (43%), Positives = 129/246 (52%), Gaps = 77/246 (31%)

Query  1    MIVDTVSPTPFALLRRAKN---------FEYRDSDRHLQEFA--SFDDPVKALTDECLRV  49
            +IVDTVSPTPFALLRRA           FEYR+    L+     +++D VKALT+E  RV
Sbjct  243  LIVDTVSPTPFALLRRANKLLDFDNKDAFEYREDYALLKSLFKNNYEDIVKALTEESRRV  302

Query  50   LKCVSSTNQSSTSDPTTSVPEASWSRFEDLGFGATDLDNDADATSLARNEFAGGLRSAPH  109
            LK +SS NQS +    TS+ +ASWSRFED GF A                          
Sbjct  303  LKAISSANQSQS----TSLRDASWSRFEDSGFQA--------------------------  332

Query  110  SVAGDLGRPTTPSWADFMSSGFNDSNDFKPQVAPLLLPPDKVLPPIATVRGQSSQSHKRT  169
                  GRPTTPSWADF+SSGF                              SSQS    
Sbjct  333  ------GRPTTPSWADFLSSGF-----------------------------PSSQSDNPR  357

Query  170  LDSEVPAEPAELASITTLDLDDSFWWVWISSLAVEEPASRKAVFGRCALIETIIK-DTKW  228
            L+ +   EP ELASI+ +D+DD F WVW+SSL+ E+ + +KA+FGR  LIET I    KW
Sbjct  358  LELKEELEPGELASISRVDIDDYFIWVWLSSLSSEQTSEKKALFGRSLLIETEIDGFKKW  417

Query  229  LVLEEQ  234
            LV+EEQ
Sbjct  418  LVIEEQ  423



Lambda      K        H        a         alpha
   0.309    0.124    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 944393648


Query= TCONS_00026911

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00022070

Length=404


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00026912

Length=497


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.128    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 614710796


Query= TCONS_00022069

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459760 pfam00319, SRF-TF, SRF-type transcription factor (DNA-...  92.9    5e-24


>CDD:459760 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding 
and dimerization domain).  
Length=48

 Score = 92.9 bits (232),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 28/47 (60%), Positives = 34/47 (72%), Gaps = 0/47 (0%)

Query  11  IKDDRNRSVTFLKRKGGLFKKAHELAVLCSVDVAVIIFGHNKKLYEF  57
           I++ R R VTF KR+ GLFKKA EL+VLC  +VAVI+F    KLY F
Sbjct  2   IENKRARQVTFSKRRKGLFKKASELSVLCGAEVAVIVFSPTGKLYTF  48



Lambda      K        H        a         alpha
   0.310    0.130    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 759169424


Query= TCONS_00022071

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459760 pfam00319, SRF-TF, SRF-type transcription factor (DNA-...  92.9    5e-24


>CDD:459760 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding 
and dimerization domain).  
Length=48

 Score = 92.9 bits (232),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 28/47 (60%), Positives = 34/47 (72%), Gaps = 0/47 (0%)

Query  11  IKDDRNRSVTFLKRKGGLFKKAHELAVLCSVDVAVIIFGHNKKLYEF  57
           I++ R R VTF KR+ GLFKKA EL+VLC  +VAVI+F    KLY F
Sbjct  2   IENKRARQVTFSKRRKGLFKKASELSVLCGAEVAVIVFSPTGKLYTF  48



Lambda      K        H        a         alpha
   0.310    0.130    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 759169424


Query= TCONS_00022072

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  71.1    2e-15


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 71.1 bits (175),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 52/116 (45%), Gaps = 6/116 (5%)

Query  15   QTVVLTGATSGLGFEAAIKLLNLGVDSLVIGCRNLERGEATKAELELRTNRPGVIHVWEL  74
            +  ++TGA+SG+G   A +L   G   +++  R+ E+ EA   EL       G     + 
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVD-RSEEKLEAVAKELG---ALGGKALFIQG  56

Query  75   DMSSFQSVKDFAARVNTEIERLAVVLLNAGLWNRSYIA--SPDGWEETLQVNTLST  128
            D++    VK    +    + RL +++ NAG+      +  S + WE  + VN    
Sbjct  57   DVTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGV  112



Lambda      K        H        a         alpha
   0.317    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00022073

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  71.1    2e-15


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 71.1 bits (175),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 52/116 (45%), Gaps = 6/116 (5%)

Query  15   QTVVLTGATSGLGFEAAIKLLNLGVDSLVIGCRNLERGEATKAELELRTNRPGVIHVWEL  74
            +  ++TGA+SG+G   A +L   G   +++  R+ E+ EA   EL       G     + 
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVD-RSEEKLEAVAKELG---ALGGKALFIQG  56

Query  75   DMSSFQSVKDFAARVNTEIERLAVVLLNAGLWNRSYIA--SPDGWEETLQVNTLST  128
            D++    VK    +    + RL +++ NAG+      +  S + WE  + VN    
Sbjct  57   DVTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGV  112



Lambda      K        H        a         alpha
   0.317    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00022074

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398428 pfam04752, ChaC, ChaC-like protein. The ChaC family of...  184     9e-59


>CDD:398428 pfam04752, ChaC, ChaC-like protein.  The ChaC family of proteins 
function as gamma-glutamyl cyclotransferases acting specifically 
to degrade glutathione but not other gamma-glutamyl 
peptides. It is is conversed across all phyla and represents 
a new pathway for glutathione degradation in living cells.
Length=176

 Score = 184 bits (469),  Expect = 9e-59, Method: Composition-based stats.
 Identities = 95/246 (39%), Positives = 115/246 (47%), Gaps = 73/246 (30%)

Query  25   LWVFGYGSLIWKPPPHYDQRVPGYIDGYVRRFWQSSLTFTRPGTHSQYSDIAKLSLINIS  84
            LWVFGYGSLIWKP   Y     G+I GY RRFWQ                         S
Sbjct  1    LWVFGYGSLIWKPGFPYTDSRTGFIHGYARRFWQG------------------------S  36

Query  85   TDHRGTPEAPGRVVTVIERGFWESLDDPRLMDQHAHLESSTARVWGAAYHIPASHAEEVH  144
            TDHRGTPE PGRV+T+I                    E    R WG AY IPA  AEEV 
Sbjct  37   TDHRGTPERPGRVLTLI--------------------EDEEGRTWGVAYRIPAETAEEVL  76

Query  145  DYLDERE-IDGYTVHYTPFHPISAVATSTVSRAPETETVPETQSLSPAHAAPITCMVYIG  203
            +YLD RE I+GYT H  PF+P                              P+  +VY+ 
Sbjct  77   EYLDVREQINGYTTHEVPFYPDQD-----------------------TDGRPVNALVYVA  113

Query  204  QPSNPQFLRDPARREP-QDVAEVISHGRGQSGKNTEYLYLLEKALEGLGLGSADMHVTDL  262
             P NPQ+L D    +P + +A+ I+  RG SG N EYL+ L +AL  LG G  D H+ +L
Sbjct  114  TPKNPQYLGD----DPLEQIAKQIATARGPSGPNAEYLFELAQALRKLGPGVQDDHLFEL  169

Query  263  VRRVKA  268
             + VK 
Sbjct  170  EKLVKK  175



Lambda      K        H        a         alpha
   0.315    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00022075

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398428 pfam04752, ChaC, ChaC-like protein. The ChaC family of...  105     1e-29


>CDD:398428 pfam04752, ChaC, ChaC-like protein.  The ChaC family of proteins 
function as gamma-glutamyl cyclotransferases acting specifically 
to degrade glutathione but not other gamma-glutamyl 
peptides. It is is conversed across all phyla and represents 
a new pathway for glutathione degradation in living cells.
Length=176

 Score = 105 bits (265),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 57/150 (38%), Positives = 75/150 (50%), Gaps = 29/150 (19%)

Query  7    LESSTARVWGAAYHIPASHAEEVHDYLDERE-IDGYTVHYTPFHPISAVATSTVSRAPET  65
            +E    R WG AY IPA  AEEV +YLD RE I+GYT H  PF+P               
Sbjct  53   IEDEEGRTWGVAYRIPAETAEEVLEYLDVREQINGYTTHEVPFYPDQD------------  100

Query  66   ETVPETQSLSPAHAAPITCMVYIGQPSNPQFLRDPARREP-QDVAEVISHGRGQSGKNTE  124
                           P+  +VY+  P NPQ+L D    +P + +A+ I+  RG SG N E
Sbjct  101  -----------TDGRPVNALVYVATPKNPQYLGD----DPLEQIAKQIATARGPSGPNAE  145

Query  125  YLYLLEKALEGLGLGSADMHVTDLVRRVKA  154
            YL+ L +AL  LG G  D H+ +L + VK 
Sbjct  146  YLFELAQALRKLGPGVQDDHLFELEKLVKK  175



Lambda      K        H        a         alpha
   0.311    0.125    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00022076

Length=107
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398428 pfam04752, ChaC, ChaC-like protein. The ChaC family of...  60.5    2e-13


>CDD:398428 pfam04752, ChaC, ChaC-like protein.  The ChaC family of proteins 
function as gamma-glutamyl cyclotransferases acting specifically 
to degrade glutathione but not other gamma-glutamyl 
peptides. It is is conversed across all phyla and represents 
a new pathway for glutathione degradation in living cells.
Length=176

 Score = 60.5 bits (147),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 43/71 (61%), Gaps = 5/71 (7%)

Query  1    MVYIGQPSNPQFLRDPARREP-QDVAEVISHGRGQSGKNTEYLYLLEKALEGLGLGSADM  59
            +VY+  P NPQ+L D    +P + +A+ I+  RG SG N EYL+ L +AL  LG G  D 
Sbjct  109  LVYVATPKNPQYLGD----DPLEQIAKQIATARGPSGPNAEYLFELAQALRKLGPGVQDD  164

Query  60   HVTDLVRRVKA  70
            H+ +L + VK 
Sbjct  165  HLFELEKLVKK  175



Lambda      K        H        a         alpha
   0.309    0.126    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00022079

Length=310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5. Thi...  186     2e-60


>CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5.  This family 
includes the N-terminus of eIF-5, and the C-terminus of eIF-2 
beta. This region corresponds to the whole of the archaebacterial 
eIF-2 beta homolog. The region contains a putative 
zinc binding C4 finger.
Length=115

 Score = 186 bits (475),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 57/108 (53%), Positives = 77/108 (71%), Gaps = 1/108 (1%)

Query  182  YKIPPPQCLREGNRRTIFANIADICKRMKRSDDHVMQFLFAELGTSGSVDGSRRLVIKGR  241
            YK+PPPQ  REG  +T+  N ++I K + R  +HV+++L  ELGT GS+D + RL+I G+
Sbjct  9    YKMPPPQVKREGKGKTVIVNFSEIAKALNRDPEHVLKYLLKELGTQGSIDENGRLIINGK  68

Query  242  FQQKQIENVLRRYIVEYVTCKTCRSPDTELNKGENRLYFVTCNSCGSR  289
            F  KQIE++L +YI EYV C  C SPDTEL K ENRL F+ C +CG+R
Sbjct  69   FSAKQIEDLLDKYIEEYVLCPECGSPDTELIK-ENRLLFLKCEACGAR  115



Lambda      K        H        a         alpha
   0.313    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 355153814


Query= TCONS_00026914

Length=244
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5. Thi...  161     2e-51


>CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5.  This family 
includes the N-terminus of eIF-5, and the C-terminus of eIF-2 
beta. This region corresponds to the whole of the archaebacterial 
eIF-2 beta homolog. The region contains a putative 
zinc binding C4 finger.
Length=115

 Score = 161 bits (409),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 45/88 (51%), Positives = 62/88 (70%), Gaps = 0/88 (0%)

Query  157  YKIPPPQCLREGNRRTIFANIADICKRMKRSDDHVMQFLFAELGTSGSVDGSRRLVIKGR  216
            YK+PPPQ  REG  +T+  N ++I K + R  +HV+++L  ELGT GS+D + RL+I G+
Sbjct  9    YKMPPPQVKREGKGKTVIVNFSEIAKALNRDPEHVLKYLLKELGTQGSIDENGRLIINGK  68

Query  217  FQQKQIENVLRRYIVEYVTCKTCRSPDT  244
            F  KQIE++L +YI EYV C  C SPDT
Sbjct  69   FSAKQIEDLLDKYIEEYVLCPECGSPDT  96



Lambda      K        H        a         alpha
   0.312    0.130    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0754    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00022080

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5. Thi...  132     1e-39


>CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5.  This family 
includes the N-terminus of eIF-5, and the C-terminus of eIF-2 
beta. This region corresponds to the whole of the archaebacterial 
eIF-2 beta homolog. The region contains a putative 
zinc binding C4 finger.
Length=115

 Score = 132 bits (334),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 36/77 (47%), Positives = 54/77 (70%), Gaps = 0/77 (0%)

Query  182  YKIPPPQCLREGNRRTIFANIADICKRMKRSDDHVMQFLFAELGTSGSVDGSRRLVIKGR  241
            YK+PPPQ  REG  +T+  N ++I K + R  +HV+++L  ELGT GS+D + RL+I G+
Sbjct  9    YKMPPPQVKREGKGKTVIVNFSEIAKALNRDPEHVLKYLLKELGTQGSIDENGRLIINGK  68

Query  242  FQQKQIENVLRRYIGMF  258
            F  KQIE++L +YI  +
Sbjct  69   FSAKQIEDLLDKYIEEY  85



Lambda      K        H        a         alpha
   0.312    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00026915

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5. Thi...  131     5e-42


>CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5.  This family 
includes the N-terminus of eIF-5, and the C-terminus of eIF-2 
beta. This region corresponds to the whole of the archaebacterial 
eIF-2 beta homolog. The region contains a putative 
zinc binding C4 finger.
Length=115

 Score = 131 bits (333),  Expect = 5e-42, Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 59/81 (73%), Gaps = 1/81 (1%)

Query  1    MKRSDDHVMQFLFAELGTSGSVDGSRRLVIKGRFQQKQIENVLRRYIVEYVTCKTCRSPD  60
            + R  +HV+++L  ELGT GS+D + RL+I G+F  KQIE++L +YI EYV C  C SPD
Sbjct  36   LNRDPEHVLKYLLKELGTQGSIDENGRLIINGKFSAKQIEDLLDKYIEEYVLCPECGSPD  95

Query  61   TELNKGENRLYFVTCNSCGSR  81
            TEL K ENRL F+ C +CG+R
Sbjct  96   TELIK-ENRLLFLKCEACGAR  115



Lambda      K        H        a         alpha
   0.323    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00022081

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5. Thi...  131     5e-42


>CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5.  This family 
includes the N-terminus of eIF-5, and the C-terminus of eIF-2 
beta. This region corresponds to the whole of the archaebacterial 
eIF-2 beta homolog. The region contains a putative 
zinc binding C4 finger.
Length=115

 Score = 131 bits (333),  Expect = 5e-42, Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 59/81 (73%), Gaps = 1/81 (1%)

Query  1    MKRSDDHVMQFLFAELGTSGSVDGSRRLVIKGRFQQKQIENVLRRYIVEYVTCKTCRSPD  60
            + R  +HV+++L  ELGT GS+D + RL+I G+F  KQIE++L +YI EYV C  C SPD
Sbjct  36   LNRDPEHVLKYLLKELGTQGSIDENGRLIINGKFSAKQIEDLLDKYIEEYVLCPECGSPD  95

Query  61   TELNKGENRLYFVTCNSCGSR  81
            TEL K ENRL F+ C +CG+R
Sbjct  96   TELIK-ENRLLFLKCEACGAR  115



Lambda      K        H        a         alpha
   0.323    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00022082

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5. Thi...  131     5e-42


>CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5.  This family 
includes the N-terminus of eIF-5, and the C-terminus of eIF-2 
beta. This region corresponds to the whole of the archaebacterial 
eIF-2 beta homolog. The region contains a putative 
zinc binding C4 finger.
Length=115

 Score = 131 bits (333),  Expect = 5e-42, Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 59/81 (73%), Gaps = 1/81 (1%)

Query  1    MKRSDDHVMQFLFAELGTSGSVDGSRRLVIKGRFQQKQIENVLRRYIVEYVTCKTCRSPD  60
            + R  +HV+++L  ELGT GS+D + RL+I G+F  KQIE++L +YI EYV C  C SPD
Sbjct  36   LNRDPEHVLKYLLKELGTQGSIDENGRLIINGKFSAKQIEDLLDKYIEEYVLCPECGSPD  95

Query  61   TELNKGENRLYFVTCNSCGSR  81
            TEL K ENRL F+ C +CG+R
Sbjct  96   TELIK-ENRLLFLKCEACGAR  115



Lambda      K        H        a         alpha
   0.323    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00022083

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5. Thi...  185     2e-60


>CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5.  This family 
includes the N-terminus of eIF-5, and the C-terminus of eIF-2 
beta. This region corresponds to the whole of the archaebacterial 
eIF-2 beta homolog. The region contains a putative 
zinc binding C4 finger.
Length=115

 Score = 185 bits (473),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 57/108 (53%), Positives = 77/108 (71%), Gaps = 1/108 (1%)

Query  157  YKIPPPQCLREGNRRTIFANIADICKRMKRSDDHVMQFLFAELGTSGSVDGSRRLVIKGR  216
            YK+PPPQ  REG  +T+  N ++I K + R  +HV+++L  ELGT GS+D + RL+I G+
Sbjct  9    YKMPPPQVKREGKGKTVIVNFSEIAKALNRDPEHVLKYLLKELGTQGSIDENGRLIINGK  68

Query  217  FQQKQIENVLRRYIVEYVTCKTCRSPDTELNKGENRLYFVTCNSCGSR  264
            F  KQIE++L +YI EYV C  C SPDTEL K ENRL F+ C +CG+R
Sbjct  69   FSAKQIEDLLDKYIEEYVLCPECGSPDTELIK-ENRLLFLKCEACGAR  115



Lambda      K        H        a         alpha
   0.313    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00022084

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5. Thi...  131     6e-40


>CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5.  This family 
includes the N-terminus of eIF-5, and the C-terminus of eIF-2 
beta. This region corresponds to the whole of the archaebacterial 
eIF-2 beta homolog. The region contains a putative 
zinc binding C4 finger.
Length=115

 Score = 131 bits (332),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 36/74 (49%), Positives = 53/74 (72%), Gaps = 0/74 (0%)

Query  157  YKIPPPQCLREGNRRTIFANIADICKRMKRSDDHVMQFLFAELGTSGSVDGSRRLVIKGR  216
            YK+PPPQ  REG  +T+  N ++I K + R  +HV+++L  ELGT GS+D + RL+I G+
Sbjct  9    YKMPPPQVKREGKGKTVIVNFSEIAKALNRDPEHVLKYLLKELGTQGSIDENGRLIINGK  68

Query  217  FQQKQIENVLRRYI  230
            F  KQIE++L +YI
Sbjct  69   FSAKQIEDLLDKYI  82



Lambda      K        H        a         alpha
   0.311    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00026917

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5. Thi...  175     4e-57


>CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5.  This family 
includes the N-terminus of eIF-5, and the C-terminus of eIF-2 
beta. This region corresponds to the whole of the archaebacterial 
eIF-2 beta homolog. The region contains a putative 
zinc binding C4 finger.
Length=115

 Score = 175 bits (447),  Expect = 4e-57, Method: Composition-based stats.
 Identities = 54/102 (53%), Positives = 72/102 (71%), Gaps = 1/102 (1%)

Query  139  YKIPPPQCLREGNRRTIFANIADICKRMKRSDDHVMQFLFAELGTSGSVDGSRRLVIKGR  198
            YK+PPPQ  REG  +T+  N ++I K + R  +HV+++L  ELGT GS+D + RL+I G+
Sbjct  9    YKMPPPQVKREGKGKTVIVNFSEIAKALNRDPEHVLKYLLKELGTQGSIDENGRLIINGK  68

Query  199  FQQKQIENVLRRYIVEYVTCKTCRSPDTELNKGENRLYFVTC  240
            F  KQIE++L +YI EYV C  C SPDTEL K ENRL F+ C
Sbjct  69   FSAKQIEDLLDKYIEEYVLCPECGSPDTELIK-ENRLLFLKC  109



Lambda      K        H        a         alpha
   0.313    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00026918

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5. Thi...  146     1e-45


>CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5.  This family 
includes the N-terminus of eIF-5, and the C-terminus of eIF-2 
beta. This region corresponds to the whole of the archaebacterial 
eIF-2 beta homolog. The region contains a putative 
zinc binding C4 finger.
Length=115

 Score = 146 bits (371),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 39/83 (47%), Positives = 57/83 (69%), Gaps = 0/83 (0%)

Query  157  YKIPPPQCLREGNRRTIFANIADICKRMKRSDDHVMQFLFAELGTSGSVDGSRRLVIKGR  216
            YK+PPPQ  REG  +T+  N ++I K + R  +HV+++L  ELGT GS+D + RL+I G+
Sbjct  9    YKMPPPQVKREGKGKTVIVNFSEIAKALNRDPEHVLKYLLKELGTQGSIDENGRLIINGK  68

Query  217  FQQKQIENVLRRYIGMFVTCKTC  239
            F  KQIE++L +YI  +V C  C
Sbjct  69   FSAKQIEDLLDKYIEEYVLCPEC  91



Lambda      K        H        a         alpha
   0.313    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00022085

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5. Thi...  131     5e-42


>CDD:426485 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5.  This family 
includes the N-terminus of eIF-5, and the C-terminus of eIF-2 
beta. This region corresponds to the whole of the archaebacterial 
eIF-2 beta homolog. The region contains a putative 
zinc binding C4 finger.
Length=115

 Score = 131 bits (333),  Expect = 5e-42, Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 59/81 (73%), Gaps = 1/81 (1%)

Query  1    MKRSDDHVMQFLFAELGTSGSVDGSRRLVIKGRFQQKQIENVLRRYIVEYVTCKTCRSPD  60
            + R  +HV+++L  ELGT GS+D + RL+I G+F  KQIE++L +YI EYV C  C SPD
Sbjct  36   LNRDPEHVLKYLLKELGTQGSIDENGRLIINGKFSAKQIEDLLDKYIEEYVLCPECGSPD  95

Query  61   TELNKGENRLYFVTCNSCGSR  81
            TEL K ENRL F+ C +CG+R
Sbjct  96   TELIK-ENRLLFLKCEACGAR  115



Lambda      K        H        a         alpha
   0.323    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00022086

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00022087

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00022088

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00026919

Length=242
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  57.2    4e-12


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 57.2 bits (139),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query  120  TALYAYTPTDAGDLALQPHDRVQVLEHMNADWWRGRNERTNLEGIFP  166
             ALY YT  +  +L+ +  D + VLE     WW+GRN +   EG+ P
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRN-KGGKEGLIP  46



Lambda      K        H        a         alpha
   0.311    0.126    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00022089

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00022090

Length=242
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  57.2    4e-12


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 57.2 bits (139),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query  120  TALYAYTPTDAGDLALQPHDRVQVLEHMNADWWRGRNERTNLEGIFP  166
             ALY YT  +  +L+ +  D + VLE     WW+GRN +   EG+ P
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRN-KGGKEGLIP  46



Lambda      K        H        a         alpha
   0.311    0.126    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00022091

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  57.2    4e-12


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 57.2 bits (139),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query  120  TALYAYTPTDAGDLALQPHDRVQVLEHMNADWWRGRNERTNLEGIFP  166
             ALY YT  +  +L+ +  D + VLE     WW+GRN +   EG+ P
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRN-KGGKEGLIP  46



Lambda      K        H        a         alpha
   0.311    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00026920

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  57.2    4e-12


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 57.2 bits (139),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query  120  TALYAYTPTDAGDLALQPHDRVQVLEHMNADWWRGRNERTNLEGIFP  166
             ALY YT  +  +L+ +  D + VLE     WW+GRN +   EG+ P
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRN-KGGKEGLIP  46



Lambda      K        H        a         alpha
   0.310    0.125    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00026921

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00022092

Length=178
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  57.2    2e-12


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 57.2 bits (139),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query  93   TALYAYTPTDAGDLALQPHDRVQVLEHMNADWWRGRNERTNLEGIFP  139
             ALY YT  +  +L+ +  D + VLE     WW+GRN +   EG+ P
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRN-KGGKEGLIP  46



Lambda      K        H        a         alpha
   0.311    0.126    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00026922

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  57.2    4e-12


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 57.2 bits (139),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query  119  TALYAYTPTDAGDLALQPHDRVQVLEHMNADWWRGRNERTNLEGIFP  165
             ALY YT  +  +L+ +  D + VLE     WW+GRN +   EG+ P
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRN-KGGKEGLIP  46



Lambda      K        H        a         alpha
   0.311    0.126    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00022093

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00022094

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00022095

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00022096

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462508 pfam08523, MBF1, Multiprotein bridging factor 1. This ...  85.0    3e-23


>CDD:462508 pfam08523, MBF1, Multiprotein bridging factor 1.  This domain 
is found in the multiprotein bridging factor 1 (MBF1) which 
forms a heterodimer with MBF2. It has been shown to make direct 
contact with the TATA-box binding protein (TBP) and interacts 
with Ftz-F1, stabilizing the Ftz-F1-DNA complex. It is 
also found in the endothelial differentiation-related factor 
(EDF-1). Human EDF-1 is involved in the repression of endothelial 
differentiation, interacts with CaM and is phosphorylated 
by PKC. The domain is found in a wide range of eukaryotic 
proteins including metazoans, fungi and plants. A helix-turn-helix 
motif (pfam01381) is found to its C-terminus.
Length=68

 Score = 85.0 bits (211),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 46/75 (61%), Gaps = 7/75 (9%)

Query  3   DWDSVTRIGAKHRAGAAPRETVVRGKSALNAAQRQGLVIATEKKYATGNAAGKTAAMEGQ  62
           DWDSVT IG K     APR TV R +SALNAA+R G V+ TEKK+  G    K    EGQ
Sbjct  1   DWDSVTVIGKK-----APRATVARSESALNAARRSGAVVETEKKFYAG--TNKAHHGEGQ  53

Query  63  HLTKVDRSDDIVKPK  77
           +  K+DR  + +K +
Sbjct  54  NTAKLDRETEELKHE  68



Lambda      K        H        a         alpha
   0.312    0.127    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00022097

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.140    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00022251

Length=296


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00027028

Length=669
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  209     4e-62
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  56.9    3e-11


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 209 bits (535),  Expect = 4e-62, Method: Composition-based stats.
 Identities = 103/397 (26%), Positives = 187/397 (47%), Gaps = 37/397 (9%)

Query  297  RFLDHFVYGFSRVLTLINDDTNPFKEILLPMATQHRGLMHSLMCLSGSHLSTFDPEPMLK  356
              LD+++   S +L+   + +NPF+++LLP+A  +  L+H+L+ LS  HL +  P  + +
Sbjct  1    ELLDYYLDNVSPLLSPFPESSNPFRKVLLPLALSNPALLHALLALSAFHLQSSGPPDLWE  60

Query  357  ERKFYHFHHAIQDLKESIMSSSIKSSGDSQEPELLVEDPIIASTIALSLNTICEGETNGE  416
                 +   A++ L+ ++   S + S +S+  ++L      A+ + L    I  G    +
Sbjct  61   REAQRYKSLALRLLQRALAELSSRLSSNSKYDDVL------AAILLLCSFEISSG-DVSD  113

Query  417  YRPHMDAARYLLVTQQPRN------EKFRQFIVEFFQYHDVSNSITSLDRRPALRSD---  467
            +R H++ A+ L+  +   +          +F++  F YHD+ +S T+  R P+  S+   
Sbjct  114  WRVHLEGAKDLIRLRGGPSKTSSGLSSLLRFLLRNFAYHDILSS-TTTGRGPSFPSEEYL  172

Query  468  DLKLPDFVPQQAGM--FLGVFDGLFNYISDVTRL-RDRIRQRFNEGYEPAVDYQILSDAV  524
            DL   +     +G+   +G  + LF  IS+++ L R++   R +    P    + LS A 
Sbjct  173  DLFGDELELGSSGLDPLMGCSNSLFLLISEISDLAREKRSLRSDNELLPL---EFLSRAQ  229

Query  525  SIDSAIRAW-------ETSHPPNTPNW----FLAQLYRQSTWVYLYRTIRPSKPSD-KIA  572
             ++  + +W       E       P       L +LYR +  +YLYR I    PS  ++ 
Sbjct  230  ELEQRLSSWEPRSDDLEIPLDGEDPLSELLLTLTELYRLAALIYLYRRILGLPPSSPEVQ  289

Query  573  QVVDDGLSYLDQLPQDSGAFSIVLMPLFLLGCSAFLPRQRERIQKGFESLKAYSNLRNIE  632
            ++V   L  LD LP    A S +L PLF+ GC A     R+ +    +SL   S L N+ 
Sbjct  290  ELVSKLLELLDLLPDSPLAISSLLWPLFIAGCEAVDDDDRDFVLDRLDSL-EKSRLGNVR  348

Query  633  PAFKVVRRVWEIMDTKTEDSWDWEKIINDMNMDFLIT  669
             A +++  VW+  D   E S DW  ++  +  D L+ 
Sbjct  349  RAREILEEVWKRRDD-GELSIDWRDVMERLGWDLLLA  384


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 56.9 bits (138),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (3%)

Query  222  TGCITCRRRKKKCDETKPSCLNCQKNAVVCEGYPPK  257
            T C  CR+RK KCD  KP+C  C KN + C  Y  K
Sbjct  1    TACDNCRKRKVKCDGKKPACSRCIKNGLECT-YSRK  35



Lambda      K        H        a         alpha
   0.317    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 849479040


Query= TCONS_00022252

Length=669
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  209     4e-62
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  56.9    3e-11


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 209 bits (535),  Expect = 4e-62, Method: Composition-based stats.
 Identities = 103/397 (26%), Positives = 187/397 (47%), Gaps = 37/397 (9%)

Query  297  RFLDHFVYGFSRVLTLINDDTNPFKEILLPMATQHRGLMHSLMCLSGSHLSTFDPEPMLK  356
              LD+++   S +L+   + +NPF+++LLP+A  +  L+H+L+ LS  HL +  P  + +
Sbjct  1    ELLDYYLDNVSPLLSPFPESSNPFRKVLLPLALSNPALLHALLALSAFHLQSSGPPDLWE  60

Query  357  ERKFYHFHHAIQDLKESIMSSSIKSSGDSQEPELLVEDPIIASTIALSLNTICEGETNGE  416
                 +   A++ L+ ++   S + S +S+  ++L      A+ + L    I  G    +
Sbjct  61   REAQRYKSLALRLLQRALAELSSRLSSNSKYDDVL------AAILLLCSFEISSG-DVSD  113

Query  417  YRPHMDAARYLLVTQQPRN------EKFRQFIVEFFQYHDVSNSITSLDRRPALRSD---  467
            +R H++ A+ L+  +   +          +F++  F YHD+ +S T+  R P+  S+   
Sbjct  114  WRVHLEGAKDLIRLRGGPSKTSSGLSSLLRFLLRNFAYHDILSS-TTTGRGPSFPSEEYL  172

Query  468  DLKLPDFVPQQAGM--FLGVFDGLFNYISDVTRL-RDRIRQRFNEGYEPAVDYQILSDAV  524
            DL   +     +G+   +G  + LF  IS+++ L R++   R +    P    + LS A 
Sbjct  173  DLFGDELELGSSGLDPLMGCSNSLFLLISEISDLAREKRSLRSDNELLPL---EFLSRAQ  229

Query  525  SIDSAIRAW-------ETSHPPNTPNW----FLAQLYRQSTWVYLYRTIRPSKPSD-KIA  572
             ++  + +W       E       P       L +LYR +  +YLYR I    PS  ++ 
Sbjct  230  ELEQRLSSWEPRSDDLEIPLDGEDPLSELLLTLTELYRLAALIYLYRRILGLPPSSPEVQ  289

Query  573  QVVDDGLSYLDQLPQDSGAFSIVLMPLFLLGCSAFLPRQRERIQKGFESLKAYSNLRNIE  632
            ++V   L  LD LP    A S +L PLF+ GC A     R+ +    +SL   S L N+ 
Sbjct  290  ELVSKLLELLDLLPDSPLAISSLLWPLFIAGCEAVDDDDRDFVLDRLDSL-EKSRLGNVR  348

Query  633  PAFKVVRRVWEIMDTKTEDSWDWEKIINDMNMDFLIT  669
             A +++  VW+  D   E S DW  ++  +  D L+ 
Sbjct  349  RAREILEEVWKRRDD-GELSIDWRDVMERLGWDLLLA  384


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 56.9 bits (138),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (3%)

Query  222  TGCITCRRRKKKCDETKPSCLNCQKNAVVCEGYPPK  257
            T C  CR+RK KCD  KP+C  C KN + C  Y  K
Sbjct  1    TACDNCRKRKVKCDGKKPACSRCIKNGLECT-YSRK  35



Lambda      K        H        a         alpha
   0.317    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 849479040


Query= TCONS_00022253

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  167     4e-49


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 167 bits (424),  Expect = 4e-49, Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 167/367 (46%), Gaps = 37/367 (10%)

Query  1    MATQHRGLMHSLMCLSGSHLSTFDPEPMLKERKFYHFHHAIQDLKESIMSSSIKSSGDSQ  60
            +A  +  L+H+L+ LS  HL +  P  + +     +   A++ L+ ++   S + S +S+
Sbjct  31   LALSNPALLHALLALSAFHLQSSGPPDLWEREAQRYKSLALRLLQRALAELSSRLSSNSK  90

Query  61   EPELLVEDPIIASTIALSLNTICEGETNGEYRPHMDAARYLLVTQQPRN------EKFRQ  114
              ++L      A+ + L    I  G    ++R H++ A+ L+  +   +          +
Sbjct  91   YDDVL------AAILLLCSFEISSG-DVSDWRVHLEGAKDLIRLRGGPSKTSSGLSSLLR  143

Query  115  FIVEFFQYHDVSNSITSLDRRPALRSD---DLKLPDFVPQQAGM--FLGVFDGLFNYISD  169
            F++  F YHD+ +S T+  R P+  S+   DL   +     +G+   +G  + LF  IS+
Sbjct  144  FLLRNFAYHDILSS-TTTGRGPSFPSEEYLDLFGDELELGSSGLDPLMGCSNSLFLLISE  202

Query  170  VTRL-RDRIRQRFNEGYEPAVDYQILSDAVSIDSAIRAW-------ETSHPPNTPNW---  218
            ++ L R++   R +    P    + LS A  ++  + +W       E       P     
Sbjct  203  ISDLAREKRSLRSDNELLPL---EFLSRAQELEQRLSSWEPRSDDLEIPLDGEDPLSELL  259

Query  219  -FLAQLYRQSTWVYLYRTIRPSKPSD-KIAQVVDDGLSYLDQLPQDSGAFSIVLMPLFLL  276
              L +LYR +  +YLYR I    PS  ++ ++V   L  LD LP    A S +L PLF+ 
Sbjct  260  LTLTELYRLAALIYLYRRILGLPPSSPEVQELVSKLLELLDLLPDSPLAISSLLWPLFIA  319

Query  277  GCSAFLPRQRERIQKGFESLKAYSNLRNIEPAFKVVRRVWEIMDTKTEDSWDWEKIINDM  336
            GC A     R+ +    +SL   S L N+  A +++  VW+  D   E S DW  ++  +
Sbjct  320  GCEAVDDDDRDFVLDRLDSL-EKSRLGNVRRAREILEEVWKRRDD-GELSIDWRDVMERL  377

Query  337  NMDFLIT  343
              D L+ 
Sbjct  378  GWDLLLA  384



Lambda      K        H        a         alpha
   0.321    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00022254

Length=1299
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  125     1e-33
CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           115     1e-29


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 125 bits (316),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 64/162 (40%), Positives = 95/162 (59%), Gaps = 15/162 (9%)

Query  722  LKPITAEFQPGKLNVIMGPSGSGKTSLLNSIARRLRGSLGTQYRLQGNMLYNGA---VPS  778
            LK ++    PG++  ++GP+G+GK++LL  IA  L  +       +G +L +G       
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPT-------EGTILLDGQDLTDDE  53

Query  779  ESVIRSVTSFVTQDDDALMPSLTVRESLRFAAGLRLPQWMSREEKNQRAEEILLKMGLKE  838
               +R    +V QD   L P LTVRE+LR    L+    +S+ EK+ RAEE L K+GL +
Sbjct  54   RKSLRKEIGYVFQDP-QLFPRLTVRENLRLGLLLKG---LSKREKDARAEEALEKLGLGD  109

Query  839  CADNLIGSELIKGISGGEKRRVTIAIQILTDPKVLLLDEPTS  880
             AD  +G E    +SGG+++RV IA  +LT PK+LLLDEPT+
Sbjct  110  LADRPVG-ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 115 bits (289),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 50/158 (32%), Positives = 79/158 (50%), Gaps = 14/158 (9%)

Query  83   LDSVNAFMPSGSLTAIIGSSGSGKTSLLNIMAGRMSLTKAKVSGATTFNGVA------GI  136
            L +V+  +  G + A++G +G+GK++LL ++AG +S T     G    +G          
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPT----EGTILLDGQDLTDDERKS  56

Query  137  EGIRSAYVMQEDVLIPTLTVRETLRYAADLRLPSPATQEERHQVVEQVVLELGLKECADT  196
                  YV Q+  L P LTVRE LR    L+  S   ++ R    E+ + +LGL + AD 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADR  113

Query  197  RIGTNTHKGCSGGEKRRTSIGVQMLANPSVLFCDEPTT  234
             +G       SGG+++R +I   +L  P +L  DEPT 
Sbjct  114  PVGERPG-TLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 115 bits (290),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 2/206 (1%)

Query  385  LTSRTFTTTIRDPLGMAGSLLEAVGMAVINGWIFLQLDESQAGIRSRQGSLYTASSLNGY  444
            L  R F    RDP      L++ + MA+I G +F  L  +Q G  +R G L+ +   N +
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLG-NQQGGLNRPGLLFFSILFNAF  59

Query  445  LILLYETYRLTIDIRLFDRERNEGVVGVPAFLLSRRAARLPLEDLPVPIIFAIIYYFMVG  504
              L   +     +  +  RE    +    A++L++  + LPL  L   +IF +I YFMVG
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLS-LLQSLIFLLIVYFMVG  118

Query  505  YRLSVAQFFVFLLLTILTHYIAVTFAAVSIGVARSFPGASLVGNLSFTLQSFACGYFVQS  564
               S  +FF+FLL+ +LT   A +       +A SF  AS +G L         G+F+  
Sbjct  119  LPPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPI  178

Query  565  NQIPVYVRWLKWVAYTFYIFGALCAN  590
            + +PV+ +W+ ++    Y   AL AN
Sbjct  179  DSMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 89.6 bits (223),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 50/202 (25%), Positives = 84/202 (42%), Gaps = 10/202 (5%)

Query  1026  VLHRAAINFWRQPPLVMARSLQVVGIAIIMALFFAPLKNDYAAVQSRMGFIQEFAALYFV  1085
             +L R  +  WR P L + R +Q + +A+I    F  L N      +R G +  F ++ F 
Sbjct  1     LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQ-QGGLNRPGLL--FFSILFN  57

Query  1086  GMLQNIAIYPN---ERDVFYREEADHCYSAETFILQYTTLEVPFEAISSIIFGVLAAYAD  1142
                    I P    ER V YRE A   YS   ++L     E+P   + S+IF ++  +  
Sbjct  58    AFSALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMV  117

Query  1143  NLERSPKMFLISAFNCFCIISCGESVGIMFCTLFSHVGFAVNVTSILLSISTILGGVMSL  1202
              L  S   F +             S+G+    L      A  +  ++L    +L G   +
Sbjct  118   GLPPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFF-I  176

Query  1203  NVNDV---LQAINHLSPIKYSI  1221
              ++ +    Q I +L+P+ Y+I
Sbjct  177   PIDSMPVWWQWIYYLNPLTYAI  198



Lambda      K        H        a         alpha
   0.322    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1653296600


Query= TCONS_00022255

Length=661
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  209     5e-62
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  56.9    3e-11


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 209 bits (534),  Expect = 5e-62, Method: Composition-based stats.
 Identities = 103/397 (26%), Positives = 187/397 (47%), Gaps = 37/397 (9%)

Query  289  RFLDHFVYGFSRVLTLINDDTNPFKEILLPMATQHRGLMHSLMCLSGSHLSTFDPEPMLK  348
              LD+++   S +L+   + +NPF+++LLP+A  +  L+H+L+ LS  HL +  P  + +
Sbjct  1    ELLDYYLDNVSPLLSPFPESSNPFRKVLLPLALSNPALLHALLALSAFHLQSSGPPDLWE  60

Query  349  ERKFYHFHHAIQDLKESIMSSSIKSSGDSQEPELLVEDPIIASTIALSLNTICEGETNGE  408
                 +   A++ L+ ++   S + S +S+  ++L      A+ + L    I  G    +
Sbjct  61   REAQRYKSLALRLLQRALAELSSRLSSNSKYDDVL------AAILLLCSFEISSG-DVSD  113

Query  409  YRPHMDAARYLLVTQQPRN------EKFRQFIVEFFQYHDVSNSITSLDRRPALRSD---  459
            +R H++ A+ L+  +   +          +F++  F YHD+ +S T+  R P+  S+   
Sbjct  114  WRVHLEGAKDLIRLRGGPSKTSSGLSSLLRFLLRNFAYHDILSS-TTTGRGPSFPSEEYL  172

Query  460  DLKLPDFVPQQAGM--FLGVFDGLFNYISDVTRL-RDRIRQRFNEGYEPAVDYQILSDAV  516
            DL   +     +G+   +G  + LF  IS+++ L R++   R +    P    + LS A 
Sbjct  173  DLFGDELELGSSGLDPLMGCSNSLFLLISEISDLAREKRSLRSDNELLPL---EFLSRAQ  229

Query  517  SIDSAIRAW-------ETSHPPNTPNW----FLAQLYRQSTWVYLYRTIRPSKPSD-KIA  564
             ++  + +W       E       P       L +LYR +  +YLYR I    PS  ++ 
Sbjct  230  ELEQRLSSWEPRSDDLEIPLDGEDPLSELLLTLTELYRLAALIYLYRRILGLPPSSPEVQ  289

Query  565  QVVDDGLSYLDQLPQDSGAFSIVLMPLFLLGCSAFLPRQRERIQKGFESLKAYSNLRNIE  624
            ++V   L  LD LP    A S +L PLF+ GC A     R+ +    +SL   S L N+ 
Sbjct  290  ELVSKLLELLDLLPDSPLAISSLLWPLFIAGCEAVDDDDRDFVLDRLDSL-EKSRLGNVR  348

Query  625  PAFKVVRRVWEIMDTKTEDSWDWEKIINDMNMDFLIT  661
             A +++  VW+  D   E S DW  ++  +  D L+ 
Sbjct  349  RAREILEEVWKRRDD-GELSIDWRDVMERLGWDLLLA  384


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 56.9 bits (138),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (3%)

Query  222  TGCITCRRRKKKCDETKPSCLNCQKNAVVCEGYPPK  257
            T C  CR+RK KCD  KP+C  C KN + C  Y  K
Sbjct  1    TACDNCRKRKVKCDGKKPACSRCIKNGLECT-YSRK  35



Lambda      K        H        a         alpha
   0.317    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 837680720


Query= TCONS_00027030

Length=1299
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  125     1e-33
CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           115     1e-29


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 125 bits (316),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 64/162 (40%), Positives = 95/162 (59%), Gaps = 15/162 (9%)

Query  722  LKPITAEFQPGKLNVIMGPSGSGKTSLLNSIARRLRGSLGTQYRLQGNMLYNGA---VPS  778
            LK ++    PG++  ++GP+G+GK++LL  IA  L  +       +G +L +G       
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPT-------EGTILLDGQDLTDDE  53

Query  779  ESVIRSVTSFVTQDDDALMPSLTVRESLRFAAGLRLPQWMSREEKNQRAEEILLKMGLKE  838
               +R    +V QD   L P LTVRE+LR    L+    +S+ EK+ RAEE L K+GL +
Sbjct  54   RKSLRKEIGYVFQDP-QLFPRLTVRENLRLGLLLKG---LSKREKDARAEEALEKLGLGD  109

Query  839  CADNLIGSELIKGISGGEKRRVTIAIQILTDPKVLLLDEPTS  880
             AD  +G E    +SGG+++RV IA  +LT PK+LLLDEPT+
Sbjct  110  LADRPVG-ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 115 bits (289),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 50/158 (32%), Positives = 79/158 (50%), Gaps = 14/158 (9%)

Query  83   LDSVNAFMPSGSLTAIIGSSGSGKTSLLNIMAGRMSLTKAKVSGATTFNGVA------GI  136
            L +V+  +  G + A++G +G+GK++LL ++AG +S T     G    +G          
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPT----EGTILLDGQDLTDDERKS  56

Query  137  EGIRSAYVMQEDVLIPTLTVRETLRYAADLRLPSPATQEERHQVVEQVVLELGLKECADT  196
                  YV Q+  L P LTVRE LR    L+  S   ++ R    E+ + +LGL + AD 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADR  113

Query  197  RIGTNTHKGCSGGEKRRTSIGVQMLANPSVLFCDEPTT  234
             +G       SGG+++R +I   +L  P +L  DEPT 
Sbjct  114  PVGERPG-TLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 115 bits (290),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 2/206 (1%)

Query  385  LTSRTFTTTIRDPLGMAGSLLEAVGMAVINGWIFLQLDESQAGIRSRQGSLYTASSLNGY  444
            L  R F    RDP      L++ + MA+I G +F  L  +Q G  +R G L+ +   N +
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLG-NQQGGLNRPGLLFFSILFNAF  59

Query  445  LILLYETYRLTIDIRLFDRERNEGVVGVPAFLLSRRAARLPLEDLPVPIIFAIIYYFMVG  504
              L   +     +  +  RE    +    A++L++  + LPL  L   +IF +I YFMVG
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLS-LLQSLIFLLIVYFMVG  118

Query  505  YRLSVAQFFVFLLLTILTHYIAVTFAAVSIGVARSFPGASLVGNLSFTLQSFACGYFVQS  564
               S  +FF+FLL+ +LT   A +       +A SF  AS +G L         G+F+  
Sbjct  119  LPPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPI  178

Query  565  NQIPVYVRWLKWVAYTFYIFGALCAN  590
            + +PV+ +W+ ++    Y   AL AN
Sbjct  179  DSMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 89.6 bits (223),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 50/202 (25%), Positives = 84/202 (42%), Gaps = 10/202 (5%)

Query  1026  VLHRAAINFWRQPPLVMARSLQVVGIAIIMALFFAPLKNDYAAVQSRMGFIQEFAALYFV  1085
             +L R  +  WR P L + R +Q + +A+I    F  L N      +R G +  F ++ F 
Sbjct  1     LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQ-QGGLNRPGLL--FFSILFN  57

Query  1086  GMLQNIAIYPN---ERDVFYREEADHCYSAETFILQYTTLEVPFEAISSIIFGVLAAYAD  1142
                    I P    ER V YRE A   YS   ++L     E+P   + S+IF ++  +  
Sbjct  58    AFSALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMV  117

Query  1143  NLERSPKMFLISAFNCFCIISCGESVGIMFCTLFSHVGFAVNVTSILLSISTILGGVMSL  1202
              L  S   F +             S+G+    L      A  +  ++L    +L G   +
Sbjct  118   GLPPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFF-I  176

Query  1203  NVNDV---LQAINHLSPIKYSI  1221
              ++ +    Q I +L+P+ Y+I
Sbjct  177   PIDSMPVWWQWIYYLNPLTYAI  198



Lambda      K        H        a         alpha
   0.322    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1653296600


Query= TCONS_00027031

Length=1299
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  125     1e-33
CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           115     1e-29


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 125 bits (316),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 64/162 (40%), Positives = 95/162 (59%), Gaps = 15/162 (9%)

Query  722  LKPITAEFQPGKLNVIMGPSGSGKTSLLNSIARRLRGSLGTQYRLQGNMLYNGA---VPS  778
            LK ++    PG++  ++GP+G+GK++LL  IA  L  +       +G +L +G       
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPT-------EGTILLDGQDLTDDE  53

Query  779  ESVIRSVTSFVTQDDDALMPSLTVRESLRFAAGLRLPQWMSREEKNQRAEEILLKMGLKE  838
               +R    +V QD   L P LTVRE+LR    L+    +S+ EK+ RAEE L K+GL +
Sbjct  54   RKSLRKEIGYVFQDP-QLFPRLTVRENLRLGLLLKG---LSKREKDARAEEALEKLGLGD  109

Query  839  CADNLIGSELIKGISGGEKRRVTIAIQILTDPKVLLLDEPTS  880
             AD  +G E    +SGG+++RV IA  +LT PK+LLLDEPT+
Sbjct  110  LADRPVG-ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 115 bits (289),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 50/158 (32%), Positives = 79/158 (50%), Gaps = 14/158 (9%)

Query  83   LDSVNAFMPSGSLTAIIGSSGSGKTSLLNIMAGRMSLTKAKVSGATTFNGVA------GI  136
            L +V+  +  G + A++G +G+GK++LL ++AG +S T     G    +G          
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPT----EGTILLDGQDLTDDERKS  56

Query  137  EGIRSAYVMQEDVLIPTLTVRETLRYAADLRLPSPATQEERHQVVEQVVLELGLKECADT  196
                  YV Q+  L P LTVRE LR    L+  S   ++ R    E+ + +LGL + AD 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADR  113

Query  197  RIGTNTHKGCSGGEKRRTSIGVQMLANPSVLFCDEPTT  234
             +G       SGG+++R +I   +L  P +L  DEPT 
Sbjct  114  PVGERPG-TLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 115 bits (290),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 2/206 (1%)

Query  385  LTSRTFTTTIRDPLGMAGSLLEAVGMAVINGWIFLQLDESQAGIRSRQGSLYTASSLNGY  444
            L  R F    RDP      L++ + MA+I G +F  L  +Q G  +R G L+ +   N +
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLG-NQQGGLNRPGLLFFSILFNAF  59

Query  445  LILLYETYRLTIDIRLFDRERNEGVVGVPAFLLSRRAARLPLEDLPVPIIFAIIYYFMVG  504
              L   +     +  +  RE    +    A++L++  + LPL  L   +IF +I YFMVG
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLS-LLQSLIFLLIVYFMVG  118

Query  505  YRLSVAQFFVFLLLTILTHYIAVTFAAVSIGVARSFPGASLVGNLSFTLQSFACGYFVQS  564
               S  +FF+FLL+ +LT   A +       +A SF  AS +G L         G+F+  
Sbjct  119  LPPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPI  178

Query  565  NQIPVYVRWLKWVAYTFYIFGALCAN  590
            + +PV+ +W+ ++    Y   AL AN
Sbjct  179  DSMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 89.6 bits (223),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 50/202 (25%), Positives = 84/202 (42%), Gaps = 10/202 (5%)

Query  1026  VLHRAAINFWRQPPLVMARSLQVVGIAIIMALFFAPLKNDYAAVQSRMGFIQEFAALYFV  1085
             +L R  +  WR P L + R +Q + +A+I    F  L N      +R G +  F ++ F 
Sbjct  1     LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQ-QGGLNRPGLL--FFSILFN  57

Query  1086  GMLQNIAIYPN---ERDVFYREEADHCYSAETFILQYTTLEVPFEAISSIIFGVLAAYAD  1142
                    I P    ER V YRE A   YS   ++L     E+P   + S+IF ++  +  
Sbjct  58    AFSALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMV  117

Query  1143  NLERSPKMFLISAFNCFCIISCGESVGIMFCTLFSHVGFAVNVTSILLSISTILGGVMSL  1202
              L  S   F +             S+G+    L      A  +  ++L    +L G   +
Sbjct  118   GLPPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFF-I  176

Query  1203  NVNDV---LQAINHLSPIKYSI  1221
              ++ +    Q I +L+P+ Y+I
Sbjct  177   PIDSMPVWWQWIYYLNPLTYAI  198



Lambda      K        H        a         alpha
   0.322    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1653296600


Query= TCONS_00022256

Length=968
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  125     7e-34
CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           110     3e-28


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 125 bits (316),  Expect = 7e-34, Method: Composition-based stats.
 Identities = 64/162 (40%), Positives = 95/162 (59%), Gaps = 15/162 (9%)

Query  391  LKPITAEFQPGKLNVIMGPSGSGKTSLLNSIARRLRGSLGTQYRLQGNMLYNGA---VPS  447
            LK ++    PG++  ++GP+G+GK++LL  IA  L  +       +G +L +G       
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPT-------EGTILLDGQDLTDDE  53

Query  448  ESVIRSVTSFVTQDDDALMPSLTVRESLRFAAGLRLPQWMSREEKNQRAEEILLKMGLKE  507
               +R    +V QD   L P LTVRE+LR    L+    +S+ EK+ RAEE L K+GL +
Sbjct  54   RKSLRKEIGYVFQDP-QLFPRLTVRENLRLGLLLKG---LSKREKDARAEEALEKLGLGD  109

Query  508  CADNLIGSELIKGISGGEKRRVTIAIQILTDPKVLLLDEPTS  549
             AD  +G E    +SGG+++RV IA  +LT PK+LLLDEPT+
Sbjct  110  LADRPVG-ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 110 bits (278),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 2/206 (1%)

Query  54   LTSRTFTTTIRDPLGMAGSLLEAVGMAVINGWIFLQLDESQAGIRSRQGSLYTASSLNGY  113
            L  R F    RDP      L++ + MA+I G +F  L  +Q G  +R G L+ +   N +
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLG-NQQGGLNRPGLLFFSILFNAF  59

Query  114  LILLYETYRLTIDIRLFDRERNEGVVGVPAFLLSRRAARLPLEDLPVPIIFAIIYYFMVG  173
              L   +     +  +  RE    +    A++L++  + LPL  L   +IF +I YFMVG
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLS-LLQSLIFLLIVYFMVG  118

Query  174  YRLSVAQFFVFLLLTILTHYIAVTFAAVSIGVARSFPGASLVGNLSFTLQSFACGYFVQS  233
               S  +FF+FLL+ +LT   A +       +A SF  AS +G L         G+F+  
Sbjct  119  LPPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPI  178

Query  234  NQIPVYVRWLKWVAYTFYIFGALCAN  259
            + +PV+ +W+ ++    Y   AL AN
Sbjct  179  DSMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 85.4 bits (212),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 50/202 (25%), Positives = 84/202 (42%), Gaps = 10/202 (5%)

Query  695  VLHRAAINFWRQPPLVMARSLQVVGIAIIMALFFAPLKNDYAAVQSRMGFIQEFAALYFV  754
            +L R  +  WR P L + R +Q + +A+I    F  L N      +R G +  F ++ F 
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQ-QGGLNRPGLL--FFSILFN  57

Query  755  GMLQNIAIYPN---ERDVFYREEADHCYSAETFILQYTTLEVPFEAISSIIFGVLAAYAD  811
                   I P    ER V YRE A   YS   ++L     E+P   + S+IF ++  +  
Sbjct  58   AFSALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMV  117

Query  812  NLERSPKMFLISAFNCFCIISCGESVGIMFCTLFSHVGFAVNVTSILLSISTILGGVMSL  871
             L  S   F +             S+G+    L      A  +  ++L    +L G   +
Sbjct  118  GLPPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFF-I  176

Query  872  NVNDV---LQAINHLSPIKYSI  890
             ++ +    Q I +L+P+ Y+I
Sbjct  177  PIDSMPVWWQWIYYLNPLTYAI  198



Lambda      K        H        a         alpha
   0.324    0.138    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0892    0.140     1.90     42.6     43.6 

Effective search space used: 1234643872


Query= TCONS_00027032

Length=1103
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  124     2e-33
CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           117     2e-30


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 124 bits (314),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 64/162 (40%), Positives = 95/162 (59%), Gaps = 15/162 (9%)

Query  722  LKPITAEFQPGKLNVIMGPSGSGKTSLLNSIARRLRGSLGTQYRLQGNMLYNGA---VPS  778
            LK ++    PG++  ++GP+G+GK++LL  IA  L  +       +G +L +G       
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPT-------EGTILLDGQDLTDDE  53

Query  779  ESVIRSVTSFVTQDDDALMPSLTVRESLRFAAGLRLPQWMSREEKNQRAEEILLKMGLKE  838
               +R    +V QD   L P LTVRE+LR    L+    +S+ EK+ RAEE L K+GL +
Sbjct  54   RKSLRKEIGYVFQDP-QLFPRLTVRENLRLGLLLKG---LSKREKDARAEEALEKLGLGD  109

Query  839  CADNLIGSELIKGISGGEKRRVTIAIQILTDPKVLLLDEPTS  880
             AD  +G E    +SGG+++RV IA  +LT PK+LLLDEPT+
Sbjct  110  LADRPVG-ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 114 bits (287),  Expect = 7e-30, Method: Composition-based stats.
 Identities = 50/158 (32%), Positives = 79/158 (50%), Gaps = 14/158 (9%)

Query  83   LDSVNAFMPSGSLTAIIGSSGSGKTSLLNIMAGRMSLTKAKVSGATTFNGVA------GI  136
            L +V+  +  G + A++G +G+GK++LL ++AG +S T     G    +G          
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPT----EGTILLDGQDLTDDERKS  56

Query  137  EGIRSAYVMQEDVLIPTLTVRETLRYAADLRLPSPATQEERHQVVEQVVLELGLKECADT  196
                  YV Q+  L P LTVRE LR    L+  S   ++ R    E+ + +LGL + AD 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADR  113

Query  197  RIGTNTHKGCSGGEKRRTSIGVQMLANPSVLFCDEPTT  234
             +G       SGG+++R +I   +L  P +L  DEPT 
Sbjct  114  PVGERPG-TLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 117 bits (296),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 2/206 (1%)

Query  385  LTSRTFTTTIRDPLGMAGSLLEAVGMAVINGWIFLQLDESQAGIRSRQGSLYTASSLNGY  444
            L  R F    RDP      L++ + MA+I G +F  L  +Q G  +R G L+ +   N +
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLG-NQQGGLNRPGLLFFSILFNAF  59

Query  445  LILLYETYRLTIDIRLFDRERNEGVVGVPAFLLSRRAARLPLEDLPVPIIFAIIYYFMVG  504
              L   +     +  +  RE    +    A++L++  + LPL  L   +IF +I YFMVG
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLS-LLQSLIFLLIVYFMVG  118

Query  505  YRLSVAQFFVFLLLTILTHYIAVTFAAVSIGVARSFPGASLVGNLSFTLQSFACGYFVQS  564
               S  +FF+FLL+ +LT   A +       +A SF  AS +G L         G+F+  
Sbjct  119  LPPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPI  178

Query  565  NQIPVYVRWLKWVAYTFYIFGALCAN  590
            + +PV+ +W+ ++    Y   AL AN
Sbjct  179  DSMPVWWQWIYYLNPLTYAIEALRAN  204



Lambda      K        H        a         alpha
   0.322    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1404615428


Query= TCONS_00022257

Length=1226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  125     1e-33
CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           114     4e-29


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 125 bits (316),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 64/162 (40%), Positives = 95/162 (59%), Gaps = 15/162 (9%)

Query  649  LKPITAEFQPGKLNVIMGPSGSGKTSLLNSIARRLRGSLGTQYRLQGNMLYNGA---VPS  705
            LK ++    PG++  ++GP+G+GK++LL  IA  L  +       +G +L +G       
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPT-------EGTILLDGQDLTDDE  53

Query  706  ESVIRSVTSFVTQDDDALMPSLTVRESLRFAAGLRLPQWMSREEKNQRAEEILLKMGLKE  765
               +R    +V QD   L P LTVRE+LR    L+    +S+ EK+ RAEE L K+GL +
Sbjct  54   RKSLRKEIGYVFQDP-QLFPRLTVRENLRLGLLLKG---LSKREKDARAEEALEKLGLGD  109

Query  766  CADNLIGSELIKGISGGEKRRVTIAIQILTDPKVLLLDEPTS  807
             AD  +G E    +SGG+++RV IA  +LT PK+LLLDEPT+
Sbjct  110  LADRPVG-ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 114 bits (288),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 50/158 (32%), Positives = 79/158 (50%), Gaps = 14/158 (9%)

Query  10   LDSVNAFMPSGSLTAIIGSSGSGKTSLLNIMAGRMSLTKAKVSGATTFNGVA------GI  63
            L +V+  +  G + A++G +G+GK++LL ++AG +S T     G    +G          
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPT----EGTILLDGQDLTDDERKS  56

Query  64   EGIRSAYVMQEDVLIPTLTVRETLRYAADLRLPSPATQEERHQVVEQVVLELGLKECADT  123
                  YV Q+  L P LTVRE LR    L+  S   ++ R    E+ + +LGL + AD 
Sbjct  57   LRKEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADR  113

Query  124  RIGTNTHKGCSGGEKRRTSIGVQMLANPSVLFCDEPTT  161
             +G       SGG+++R +I   +L  P +L  DEPT 
Sbjct  114  PVGERPG-TLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 114 bits (287),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 2/206 (1%)

Query  312  LTSRTFTTTIRDPLGMAGSLLEAVGMAVINGWIFLQLDESQAGIRSRQGSLYTASSLNGY  371
            L  R F    RDP      L++ + MA+I G +F  L  +Q G  +R G L+ +   N +
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLG-NQQGGLNRPGLLFFSILFNAF  59

Query  372  LILLYETYRLTIDIRLFDRERNEGVVGVPAFLLSRRAARLPLEDLPVPIIFAIIYYFMVG  431
              L   +     +  +  RE    +    A++L++  + LPL  L   +IF +I YFMVG
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLS-LLQSLIFLLIVYFMVG  118

Query  432  YRLSVAQFFVFLLLTILTHYIAVTFAAVSIGVARSFPGASLVGNLSFTLQSFACGYFVQS  491
               S  +FF+FLL+ +LT   A +       +A SF  AS +G L         G+F+  
Sbjct  119  LPPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPI  178

Query  492  NQIPVYVRWLKWVAYTFYIFGALCAN  517
            + +PV+ +W+ ++    Y   AL AN
Sbjct  179  DSMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 88.5 bits (220),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 50/202 (25%), Positives = 84/202 (42%), Gaps = 10/202 (5%)

Query  953   VLHRAAINFWRQPPLVMARSLQVVGIAIIMALFFAPLKNDYAAVQSRMGFIQEFAALYFV  1012
             +L R  +  WR P L + R +Q + +A+I    F  L N      +R G +  F ++ F 
Sbjct  1     LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQ-QGGLNRPGLL--FFSILFN  57

Query  1013  GMLQNIAIYPN---ERDVFYREEADHCYSAETFILQYTTLEVPFEAISSIIFGVLAAYAD  1069
                    I P    ER V YRE A   YS   ++L     E+P   + S+IF ++  +  
Sbjct  58    AFSALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMV  117

Query  1070  NLERSPKMFLISAFNCFCIISCGESVGIMFCTLFSHVGFAVNVTSILLSISTILGGVMSL  1129
              L  S   F +             S+G+    L      A  +  ++L    +L G   +
Sbjct  118   GLPPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFF-I  176

Query  1130  NVNDV---LQAINHLSPIKYSI  1148
              ++ +    Q I +L+P+ Y+I
Sbjct  177   PIDSMPVWWQWIYYLNPLTYAI  198



Lambda      K        H        a         alpha
   0.323    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1576352702


Query= TCONS_00026923

Length=983
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase         915     0.0  
CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogena...  275     1e-87
CDD:459930 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase...  181     5e-54


>CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase.  
Length=555

 Score = 915 bits (2369),  Expect = 0.0, Method: Composition-based stats.
 Identities = 320/594 (54%), Positives = 396/594 (67%), Gaps = 74/594 (12%)

Query  391  PSDIAISRAQYPKPITQVAAEVGIAPHELEPYGHTKAKISLSVLDRLAHRRNGRYVLVCG  450
            PSDI I++A   KPIT++A ++GI   ELEPYG  KAK+SL VL+ L  R +G+ +LV  
Sbjct  1    PSDIEIAQAAKLKPITEIAEKLGIPEDELEPYGKYKAKVSLDVLELLKDRPDGKLILVTA  60

Query  451  ITPTPLGEGKSTTTLGLTQALGAHLNRIVFANVRQPSQGPTFGIKGGAAGGGYSQVIPMD  510
            ITPTP GEGK+TTT+GL QAL   L +   A +R+PS GP FGIKGGAAGGGYSQV+PM+
Sbjct  61   ITPTPAGEGKTTTTIGLAQALN-RLGKKAIAALREPSLGPVFGIKGGAAGGGYSQVVPME  119

Query  511  EFNLHLTGDIHAITAANNLLAAAIETRMFHEATQKDAALYKRLVPVKKGKREFQPIMFRR  570
            + NLH TGDIHAITAANNLLAAAI+  +FH                              
Sbjct  120  DINLHFTGDIHAITAANNLLAAAIDNHIFHGNE---------------------------  152

Query  571  LKKLGITKTNPDDLTEEEIRRFARLDIDPQTITWRRVLDVNDRHLRGITVGQAPTERGLS  630
                                    LDIDP+ ITW+RVLD+NDR LR I +G    E G+ 
Sbjct  153  ------------------------LDIDPRRITWKRVLDMNDRALRNIVIGLGGKENGVP  188

Query  631  RETGFDISVASECMAILALSNSLEDMRERLGRMVVATSKSGDPVTCDDIGAGGALAALMK  690
            RE GFDI+VASE MAIL L+  L D++ERLGR+VV  ++ G PVT +D+G  GA+ AL+K
Sbjct  189  REDGFDITVASEIMAILCLATDLADLKERLGRIVVGYTRDGKPVTAEDLGVAGAMTALLK  248

Query  691  DAIKPNLMQSLEGTPVLVHAGPFANISIGASSIIADKLALKLAGTEPDEDHEAKTGFVVT  750
            DAIKPNL+Q+LEGTP  VH GPFANI+ G +S+IA K+ALKLA             +VVT
Sbjct  249  DAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSVIATKIALKLA------------DYVVT  296

Query  751  EAGFDFTMGGERFFNIKCRSSGLSPDCVVIVATVRALKVHGGGPEISPGAPLHEIYRTEN  810
            EAGF   +G E+FF+IKCR SGL PD VV+VATVRALK+HG       G    E    EN
Sbjct  297  EAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHG-------GVGKDE-LTEEN  348

Query  811  TEILRKGCVNLKKHIQNAKMYGVPVVVAINRFETDTEAEIAIVREEAIAAGAEDAIPANH  870
             E L KG  NL+KHI+N K +GVPVVVAINRF TDT+AEI +VRE    AG  DA  + H
Sbjct  349  LEALEKGLANLEKHIENVKKFGVPVVVAINRFPTDTDAEIELVRELC-EAGGVDAALSEH  407

Query  871  WAEGGAGAVDLAKGVL-AASSKPKDFKLLYDLEGSIQERIERIGKAMYGAEKVEFSELAQ  929
            WA+GG GA++LA+ V+ A   +P +FK LYDLE SI+E+IE I K +YGA+ VE+S  A+
Sbjct  408  WAKGGEGAIELAEAVVEACEEEPSNFKFLYDLELSIEEKIETIAKEIYGADGVEYSPKAK  467

Query  930  KKVDTYTAQGFSNLPICIAKTQYSLSHDPALKGAPTGFTIPIRDVRLAVGGGYL  983
            KK+      GF  LP+C+AKTQYSLS DP LKGAPTGFT+P+RDVRL+ G G++
Sbjct  468  KKLKRIEELGFGKLPVCMAKTQYSLSDDPKLKGAPTGFTLPVRDVRLSAGAGFI  521


>CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
NAD(P)-binding domain.  
Length=160

 Score = 275 bits (706),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 100/166 (60%), Positives = 118/166 (71%), Gaps = 8/166 (5%)

Query  206  INIGELAKRGGHPLFVPCTPLAVMDLLKASGVNPAGKEAVVLGRSDIVGSPVSYLLKNAD  265
             N+G L    G P FVPCTP  +M+LLK  G++ AGK  VV+GRS+IVG P++ LL NA+
Sbjct  3    YNLGRLVL--GKPCFVPCTPRGIMELLKRYGIDLAGKNVVVVGRSNIVGKPLALLLLNAN  60

Query  266  ATVTVCHSKTPDIPRIVKNADIVVAAIGKAEFVKGDWLKPGAVVIDVGINYKPDPSKKSG  325
            ATVTVCHSKT D+  I + ADIVV A+GK E +K DW+KPGAVVIDVGIN          
Sbjct  61   ATVTVCHSKTKDLAEITREADIVVVAVGKPELIKADWIKPGAVVIDVGINR------VGN  114

Query  326  QRLVGDVDFEAAVEVASQITPVPGGVGPMTVAMLLKNVVTSAKAYF  371
             +LVGDVDFE   E AS ITPVPGGVGPMTVAMLL+N V +AK   
Sbjct  115  GKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKRQL  160


>CDD:459930 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
catalytic domain.  
Length=115

 Score = 181 bits (462),  Expect = 5e-54, Method: Composition-based stats.
 Identities = 59/117 (50%), Positives = 72/117 (62%), Gaps = 2/117 (2%)

Query  85   IDGTAIAKSIREGLKAEIAKIQESNPRFKPSLVIFQVGNRSDSSTYVRMKLKAAEEANIL  144
            IDG AIAK IRE LK E+A ++      KP L +  VG+   S  YVR K KA EE  I 
Sbjct  1    IDGKAIAKKIREELKEEVAALKA--GGRKPGLAVILVGDDPASQVYVRNKKKACEEVGIE  58

Query  145  CKIVNFPESISQPEILQEITKANNDPSVHGILVQLPLPSHLSEHTVTSAVADEKDVD  201
             +++  PE  ++ E+L  I K N DPSVHGILVQLPLP H+ E  V  A+  EKDVD
Sbjct  59   SELIRLPEDTTEEELLALIDKLNADPSVHGILVQLPLPKHIDEEKVLEAIDPEKDVD  115



Lambda      K        H        a         alpha
   0.317    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1255882012


Query= TCONS_00022098

Length=1018
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase         971     0.0  
CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogena...  275     2e-87
CDD:459930 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase...  181     6e-54


>CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase.  
Length=555

 Score = 971 bits (2513),  Expect = 0.0, Method: Composition-based stats.
 Identities = 338/629 (54%), Positives = 419/629 (67%), Gaps = 75/629 (12%)

Query  391   PSDIAISRAQYPKPITQVAAEVGIAPHELEPYGHTKAKISLSVLDRLAHRRNGRYVLVCG  450
             PSDI I++A   KPIT++A ++GI   ELEPYG  KAK+SL VL+ L  R +G+ +LV  
Sbjct  1     PSDIEIAQAAKLKPITEIAEKLGIPEDELEPYGKYKAKVSLDVLELLKDRPDGKLILVTA  60

Query  451   ITPTPLGEGKSTTTLGLTQALGAHLNRIVFANVRQPSQGPTFGIKGGAAGGGYSQVIPMD  510
             ITPTP GEGK+TTT+GL QAL   L +   A +R+PS GP FGIKGGAAGGGYSQV+PM+
Sbjct  61    ITPTPAGEGKTTTTIGLAQALN-RLGKKAIAALREPSLGPVFGIKGGAAGGGYSQVVPME  119

Query  511   EFNLHLTGDIHAITAANNLLAAAIETRMFHEATQKDAALYKRLVPVKKGKREFQPIMFRR  570
             + NLH TGDIHAITAANNLLAAAI+  +FH                              
Sbjct  120   DINLHFTGDIHAITAANNLLAAAIDNHIFHGNE---------------------------  152

Query  571   LKKLGITKTNPDDLTEEEIRRFARLDIDPQTITWRRVLDVNDRHLRGITVGQAPTERGLS  630
                                     LDIDP+ ITW+RVLD+NDR LR I +G    E G+ 
Sbjct  153   ------------------------LDIDPRRITWKRVLDMNDRALRNIVIGLGGKENGVP  188

Query  631   RETGFDISVASECMAILALSNSLEDMRERLGRMVVATSKSGDPVTCDDIGAGGALAALMK  690
             RE GFDI+VASE MAIL L+  L D++ERLGR+VV  ++ G PVT +D+G  GA+ AL+K
Sbjct  189   REDGFDITVASEIMAILCLATDLADLKERLGRIVVGYTRDGKPVTAEDLGVAGAMTALLK  248

Query  691   DAIKPNLMQSLEGTPVLVHAGPFANISIGASSIIADKLALKLAGTEPDEDHEAKTGFVVT  750
             DAIKPNL+Q+LEGTP  VH GPFANI+ G +S+IA K+ALKLA             +VVT
Sbjct  249   DAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSVIATKIALKLA------------DYVVT  296

Query  751   EAGFDFTMGGERFFNIKCRSSGLSPDCVVIVATVRALKVHGGGPEISPGAPLHEIYRTEN  810
             EAGF   +G E+FF+IKCR SGL PD VV+VATVRALK+HG       G    E    EN
Sbjct  297   EAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHG-------GVGKDE-LTEEN  348

Query  811   TEILRKGCVNLKKHIQNAKMYGVPVVVAINRFETDTEAEIAIVREEAIAAGAEDAIPANH  870
              E L KG  NL+KHI+N K +GVPVVVAINRF TDT+AEI +VRE    AG  DA  + H
Sbjct  349   LEALEKGLANLEKHIENVKKFGVPVVVAINRFPTDTDAEIELVRELC-EAGGVDAALSEH  407

Query  871   WAEGGAGAVDLAKGVL-AASSKPKDFKLLYDLEGSIQERIERIGKAMYGAEKVEFSELAQ  929
             WA+GG GA++LA+ V+ A   +P +FK LYDLE SI+E+IE I K +YGA+ VE+S  A+
Sbjct  408   WAKGGEGAIELAEAVVEACEEEPSNFKFLYDLELSIEEKIETIAKEIYGADGVEYSPKAK  467

Query  930   KKVDTYTAQGFSNLPICIAKTQYSLSHDPALKGAPTGFTIPIRDVRLAVGGGYLYALAAD  989
             KK+      GF  LP+C+AKTQYSLS DP LKGAPTGFT+P+RDVRL+ G G++ AL  D
Sbjct  468   KKLKRIEELGFGKLPVCMAKTQYSLSDDPKLKGAPTGFTLPVRDVRLSAGAGFIVALTGD  527

Query  990   IQTIPGLPTAPGYLNVDIDTETGEIDGLF  1018
             I T+PGLP  P   N+D+D + G+I GLF
Sbjct  528   IMTMPGLPKRPAAENIDVDED-GKITGLF  555


>CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
NAD(P)-binding domain.  
Length=160

 Score = 275 bits (706),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 100/166 (60%), Positives = 118/166 (71%), Gaps = 8/166 (5%)

Query  206  INIGELAKRGGHPLFVPCTPLAVMDLLKASGVNPAGKEAVVLGRSDIVGSPVSYLLKNAD  265
             N+G L    G P FVPCTP  +M+LLK  G++ AGK  VV+GRS+IVG P++ LL NA+
Sbjct  3    YNLGRLVL--GKPCFVPCTPRGIMELLKRYGIDLAGKNVVVVGRSNIVGKPLALLLLNAN  60

Query  266  ATVTVCHSKTPDIPRIVKNADIVVAAIGKAEFVKGDWLKPGAVVIDVGINYKPDPSKKSG  325
            ATVTVCHSKT D+  I + ADIVV A+GK E +K DW+KPGAVVIDVGIN          
Sbjct  61   ATVTVCHSKTKDLAEITREADIVVVAVGKPELIKADWIKPGAVVIDVGINR------VGN  114

Query  326  QRLVGDVDFEAAVEVASQITPVPGGVGPMTVAMLLKNVVTSAKAYF  371
             +LVGDVDFE   E AS ITPVPGGVGPMTVAMLL+N V +AK   
Sbjct  115  GKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKRQL  160


>CDD:459930 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
catalytic domain.  
Length=115

 Score = 181 bits (462),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 59/117 (50%), Positives = 72/117 (62%), Gaps = 2/117 (2%)

Query  85   IDGTAIAKSIREGLKAEIAKIQESNPRFKPSLVIFQVGNRSDSSTYVRMKLKAAEEANIL  144
            IDG AIAK IRE LK E+A ++      KP L +  VG+   S  YVR K KA EE  I 
Sbjct  1    IDGKAIAKKIREELKEEVAALKA--GGRKPGLAVILVGDDPASQVYVRNKKKACEEVGIE  58

Query  145  CKIVNFPESISQPEILQEITKANNDPSVHGILVQLPLPSHLSEHTVTSAVADEKDVD  201
             +++  PE  ++ E+L  I K N DPSVHGILVQLPLP H+ E  V  A+  EKDVD
Sbjct  59   SELIRLPEDTTEEELLALIDKLNADPSVHGILVQLPLPKHIDEEKVLEAIDPEKDVD  115



Lambda      K        H        a         alpha
   0.317    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1305437672


Query= TCONS_00026924

Length=1018
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase         971     0.0  
CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogena...  275     2e-87
CDD:459930 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase...  181     6e-54


>CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase.  
Length=555

 Score = 971 bits (2513),  Expect = 0.0, Method: Composition-based stats.
 Identities = 338/629 (54%), Positives = 419/629 (67%), Gaps = 75/629 (12%)

Query  391   PSDIAISRAQYPKPITQVAAEVGIAPHELEPYGHTKAKISLSVLDRLAHRRNGRYVLVCG  450
             PSDI I++A   KPIT++A ++GI   ELEPYG  KAK+SL VL+ L  R +G+ +LV  
Sbjct  1     PSDIEIAQAAKLKPITEIAEKLGIPEDELEPYGKYKAKVSLDVLELLKDRPDGKLILVTA  60

Query  451   ITPTPLGEGKSTTTLGLTQALGAHLNRIVFANVRQPSQGPTFGIKGGAAGGGYSQVIPMD  510
             ITPTP GEGK+TTT+GL QAL   L +   A +R+PS GP FGIKGGAAGGGYSQV+PM+
Sbjct  61    ITPTPAGEGKTTTTIGLAQALN-RLGKKAIAALREPSLGPVFGIKGGAAGGGYSQVVPME  119

Query  511   EFNLHLTGDIHAITAANNLLAAAIETRMFHEATQKDAALYKRLVPVKKGKREFQPIMFRR  570
             + NLH TGDIHAITAANNLLAAAI+  +FH                              
Sbjct  120   DINLHFTGDIHAITAANNLLAAAIDNHIFHGNE---------------------------  152

Query  571   LKKLGITKTNPDDLTEEEIRRFARLDIDPQTITWRRVLDVNDRHLRGITVGQAPTERGLS  630
                                     LDIDP+ ITW+RVLD+NDR LR I +G    E G+ 
Sbjct  153   ------------------------LDIDPRRITWKRVLDMNDRALRNIVIGLGGKENGVP  188

Query  631   RETGFDISVASECMAILALSNSLEDMRERLGRMVVATSKSGDPVTCDDIGAGGALAALMK  690
             RE GFDI+VASE MAIL L+  L D++ERLGR+VV  ++ G PVT +D+G  GA+ AL+K
Sbjct  189   REDGFDITVASEIMAILCLATDLADLKERLGRIVVGYTRDGKPVTAEDLGVAGAMTALLK  248

Query  691   DAIKPNLMQSLEGTPVLVHAGPFANISIGASSIIADKLALKLAGTEPDEDHEAKTGFVVT  750
             DAIKPNL+Q+LEGTP  VH GPFANI+ G +S+IA K+ALKLA             +VVT
Sbjct  249   DAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSVIATKIALKLA------------DYVVT  296

Query  751   EAGFDFTMGGERFFNIKCRSSGLSPDCVVIVATVRALKVHGGGPEISPGAPLHEIYRTEN  810
             EAGF   +G E+FF+IKCR SGL PD VV+VATVRALK+HG       G    E    EN
Sbjct  297   EAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHG-------GVGKDE-LTEEN  348

Query  811   TEILRKGCVNLKKHIQNAKMYGVPVVVAINRFETDTEAEIAIVREEAIAAGAEDAIPANH  870
              E L KG  NL+KHI+N K +GVPVVVAINRF TDT+AEI +VRE    AG  DA  + H
Sbjct  349   LEALEKGLANLEKHIENVKKFGVPVVVAINRFPTDTDAEIELVRELC-EAGGVDAALSEH  407

Query  871   WAEGGAGAVDLAKGVL-AASSKPKDFKLLYDLEGSIQERIERIGKAMYGAEKVEFSELAQ  929
             WA+GG GA++LA+ V+ A   +P +FK LYDLE SI+E+IE I K +YGA+ VE+S  A+
Sbjct  408   WAKGGEGAIELAEAVVEACEEEPSNFKFLYDLELSIEEKIETIAKEIYGADGVEYSPKAK  467

Query  930   KKVDTYTAQGFSNLPICIAKTQYSLSHDPALKGAPTGFTIPIRDVRLAVGGGYLYALAAD  989
             KK+      GF  LP+C+AKTQYSLS DP LKGAPTGFT+P+RDVRL+ G G++ AL  D
Sbjct  468   KKLKRIEELGFGKLPVCMAKTQYSLSDDPKLKGAPTGFTLPVRDVRLSAGAGFIVALTGD  527

Query  990   IQTIPGLPTAPGYLNVDIDTETGEIDGLF  1018
             I T+PGLP  P   N+D+D + G+I GLF
Sbjct  528   IMTMPGLPKRPAAENIDVDED-GKITGLF  555


>CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
NAD(P)-binding domain.  
Length=160

 Score = 275 bits (706),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 100/166 (60%), Positives = 118/166 (71%), Gaps = 8/166 (5%)

Query  206  INIGELAKRGGHPLFVPCTPLAVMDLLKASGVNPAGKEAVVLGRSDIVGSPVSYLLKNAD  265
             N+G L    G P FVPCTP  +M+LLK  G++ AGK  VV+GRS+IVG P++ LL NA+
Sbjct  3    YNLGRLVL--GKPCFVPCTPRGIMELLKRYGIDLAGKNVVVVGRSNIVGKPLALLLLNAN  60

Query  266  ATVTVCHSKTPDIPRIVKNADIVVAAIGKAEFVKGDWLKPGAVVIDVGINYKPDPSKKSG  325
            ATVTVCHSKT D+  I + ADIVV A+GK E +K DW+KPGAVVIDVGIN          
Sbjct  61   ATVTVCHSKTKDLAEITREADIVVVAVGKPELIKADWIKPGAVVIDVGINR------VGN  114

Query  326  QRLVGDVDFEAAVEVASQITPVPGGVGPMTVAMLLKNVVTSAKAYF  371
             +LVGDVDFE   E AS ITPVPGGVGPMTVAMLL+N V +AK   
Sbjct  115  GKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKRQL  160


>CDD:459930 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
catalytic domain.  
Length=115

 Score = 181 bits (462),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 59/117 (50%), Positives = 72/117 (62%), Gaps = 2/117 (2%)

Query  85   IDGTAIAKSIREGLKAEIAKIQESNPRFKPSLVIFQVGNRSDSSTYVRMKLKAAEEANIL  144
            IDG AIAK IRE LK E+A ++      KP L +  VG+   S  YVR K KA EE  I 
Sbjct  1    IDGKAIAKKIREELKEEVAALKA--GGRKPGLAVILVGDDPASQVYVRNKKKACEEVGIE  58

Query  145  CKIVNFPESISQPEILQEITKANNDPSVHGILVQLPLPSHLSEHTVTSAVADEKDVD  201
             +++  PE  ++ E+L  I K N DPSVHGILVQLPLP H+ E  V  A+  EKDVD
Sbjct  59   SELIRLPEDTTEEELLALIDKLNADPSVHGILVQLPLPKHIDEEKVLEAIDPEKDVD  115



Lambda      K        H        a         alpha
   0.317    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1305437672


Query= TCONS_00026925

Length=1018
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase         971     0.0  
CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogena...  275     2e-87
CDD:459930 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase...  181     6e-54


>CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase.  
Length=555

 Score = 971 bits (2513),  Expect = 0.0, Method: Composition-based stats.
 Identities = 338/629 (54%), Positives = 419/629 (67%), Gaps = 75/629 (12%)

Query  391   PSDIAISRAQYPKPITQVAAEVGIAPHELEPYGHTKAKISLSVLDRLAHRRNGRYVLVCG  450
             PSDI I++A   KPIT++A ++GI   ELEPYG  KAK+SL VL+ L  R +G+ +LV  
Sbjct  1     PSDIEIAQAAKLKPITEIAEKLGIPEDELEPYGKYKAKVSLDVLELLKDRPDGKLILVTA  60

Query  451   ITPTPLGEGKSTTTLGLTQALGAHLNRIVFANVRQPSQGPTFGIKGGAAGGGYSQVIPMD  510
             ITPTP GEGK+TTT+GL QAL   L +   A +R+PS GP FGIKGGAAGGGYSQV+PM+
Sbjct  61    ITPTPAGEGKTTTTIGLAQALN-RLGKKAIAALREPSLGPVFGIKGGAAGGGYSQVVPME  119

Query  511   EFNLHLTGDIHAITAANNLLAAAIETRMFHEATQKDAALYKRLVPVKKGKREFQPIMFRR  570
             + NLH TGDIHAITAANNLLAAAI+  +FH                              
Sbjct  120   DINLHFTGDIHAITAANNLLAAAIDNHIFHGNE---------------------------  152

Query  571   LKKLGITKTNPDDLTEEEIRRFARLDIDPQTITWRRVLDVNDRHLRGITVGQAPTERGLS  630
                                     LDIDP+ ITW+RVLD+NDR LR I +G    E G+ 
Sbjct  153   ------------------------LDIDPRRITWKRVLDMNDRALRNIVIGLGGKENGVP  188

Query  631   RETGFDISVASECMAILALSNSLEDMRERLGRMVVATSKSGDPVTCDDIGAGGALAALMK  690
             RE GFDI+VASE MAIL L+  L D++ERLGR+VV  ++ G PVT +D+G  GA+ AL+K
Sbjct  189   REDGFDITVASEIMAILCLATDLADLKERLGRIVVGYTRDGKPVTAEDLGVAGAMTALLK  248

Query  691   DAIKPNLMQSLEGTPVLVHAGPFANISIGASSIIADKLALKLAGTEPDEDHEAKTGFVVT  750
             DAIKPNL+Q+LEGTP  VH GPFANI+ G +S+IA K+ALKLA             +VVT
Sbjct  249   DAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSVIATKIALKLA------------DYVVT  296

Query  751   EAGFDFTMGGERFFNIKCRSSGLSPDCVVIVATVRALKVHGGGPEISPGAPLHEIYRTEN  810
             EAGF   +G E+FF+IKCR SGL PD VV+VATVRALK+HG       G    E    EN
Sbjct  297   EAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHG-------GVGKDE-LTEEN  348

Query  811   TEILRKGCVNLKKHIQNAKMYGVPVVVAINRFETDTEAEIAIVREEAIAAGAEDAIPANH  870
              E L KG  NL+KHI+N K +GVPVVVAINRF TDT+AEI +VRE    AG  DA  + H
Sbjct  349   LEALEKGLANLEKHIENVKKFGVPVVVAINRFPTDTDAEIELVRELC-EAGGVDAALSEH  407

Query  871   WAEGGAGAVDLAKGVL-AASSKPKDFKLLYDLEGSIQERIERIGKAMYGAEKVEFSELAQ  929
             WA+GG GA++LA+ V+ A   +P +FK LYDLE SI+E+IE I K +YGA+ VE+S  A+
Sbjct  408   WAKGGEGAIELAEAVVEACEEEPSNFKFLYDLELSIEEKIETIAKEIYGADGVEYSPKAK  467

Query  930   KKVDTYTAQGFSNLPICIAKTQYSLSHDPALKGAPTGFTIPIRDVRLAVGGGYLYALAAD  989
             KK+      GF  LP+C+AKTQYSLS DP LKGAPTGFT+P+RDVRL+ G G++ AL  D
Sbjct  468   KKLKRIEELGFGKLPVCMAKTQYSLSDDPKLKGAPTGFTLPVRDVRLSAGAGFIVALTGD  527

Query  990   IQTIPGLPTAPGYLNVDIDTETGEIDGLF  1018
             I T+PGLP  P   N+D+D + G+I GLF
Sbjct  528   IMTMPGLPKRPAAENIDVDED-GKITGLF  555


>CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
NAD(P)-binding domain.  
Length=160

 Score = 275 bits (706),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 100/166 (60%), Positives = 118/166 (71%), Gaps = 8/166 (5%)

Query  206  INIGELAKRGGHPLFVPCTPLAVMDLLKASGVNPAGKEAVVLGRSDIVGSPVSYLLKNAD  265
             N+G L    G P FVPCTP  +M+LLK  G++ AGK  VV+GRS+IVG P++ LL NA+
Sbjct  3    YNLGRLVL--GKPCFVPCTPRGIMELLKRYGIDLAGKNVVVVGRSNIVGKPLALLLLNAN  60

Query  266  ATVTVCHSKTPDIPRIVKNADIVVAAIGKAEFVKGDWLKPGAVVIDVGINYKPDPSKKSG  325
            ATVTVCHSKT D+  I + ADIVV A+GK E +K DW+KPGAVVIDVGIN          
Sbjct  61   ATVTVCHSKTKDLAEITREADIVVVAVGKPELIKADWIKPGAVVIDVGINR------VGN  114

Query  326  QRLVGDVDFEAAVEVASQITPVPGGVGPMTVAMLLKNVVTSAKAYF  371
             +LVGDVDFE   E AS ITPVPGGVGPMTVAMLL+N V +AK   
Sbjct  115  GKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKRQL  160


>CDD:459930 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
catalytic domain.  
Length=115

 Score = 181 bits (462),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 59/117 (50%), Positives = 72/117 (62%), Gaps = 2/117 (2%)

Query  85   IDGTAIAKSIREGLKAEIAKIQESNPRFKPSLVIFQVGNRSDSSTYVRMKLKAAEEANIL  144
            IDG AIAK IRE LK E+A ++      KP L +  VG+   S  YVR K KA EE  I 
Sbjct  1    IDGKAIAKKIREELKEEVAALKA--GGRKPGLAVILVGDDPASQVYVRNKKKACEEVGIE  58

Query  145  CKIVNFPESISQPEILQEITKANNDPSVHGILVQLPLPSHLSEHTVTSAVADEKDVD  201
             +++  PE  ++ E+L  I K N DPSVHGILVQLPLP H+ E  V  A+  EKDVD
Sbjct  59   SELIRLPEDTTEEELLALIDKLNADPSVHGILVQLPLPKHIDEEKVLEAIDPEKDVD  115



Lambda      K        H        a         alpha
   0.317    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1305437672


Query= TCONS_00022099

Length=983
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase         915     0.0  
CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogena...  275     1e-87
CDD:459930 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase...  181     5e-54


>CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase.  
Length=555

 Score = 915 bits (2369),  Expect = 0.0, Method: Composition-based stats.
 Identities = 320/594 (54%), Positives = 396/594 (67%), Gaps = 74/594 (12%)

Query  391  PSDIAISRAQYPKPITQVAAEVGIAPHELEPYGHTKAKISLSVLDRLAHRRNGRYVLVCG  450
            PSDI I++A   KPIT++A ++GI   ELEPYG  KAK+SL VL+ L  R +G+ +LV  
Sbjct  1    PSDIEIAQAAKLKPITEIAEKLGIPEDELEPYGKYKAKVSLDVLELLKDRPDGKLILVTA  60

Query  451  ITPTPLGEGKSTTTLGLTQALGAHLNRIVFANVRQPSQGPTFGIKGGAAGGGYSQVIPMD  510
            ITPTP GEGK+TTT+GL QAL   L +   A +R+PS GP FGIKGGAAGGGYSQV+PM+
Sbjct  61   ITPTPAGEGKTTTTIGLAQALN-RLGKKAIAALREPSLGPVFGIKGGAAGGGYSQVVPME  119

Query  511  EFNLHLTGDIHAITAANNLLAAAIETRMFHEATQKDAALYKRLVPVKKGKREFQPIMFRR  570
            + NLH TGDIHAITAANNLLAAAI+  +FH                              
Sbjct  120  DINLHFTGDIHAITAANNLLAAAIDNHIFHGNE---------------------------  152

Query  571  LKKLGITKTNPDDLTEEEIRRFARLDIDPQTITWRRVLDVNDRHLRGITVGQAPTERGLS  630
                                    LDIDP+ ITW+RVLD+NDR LR I +G    E G+ 
Sbjct  153  ------------------------LDIDPRRITWKRVLDMNDRALRNIVIGLGGKENGVP  188

Query  631  RETGFDISVASECMAILALSNSLEDMRERLGRMVVATSKSGDPVTCDDIGAGGALAALMK  690
            RE GFDI+VASE MAIL L+  L D++ERLGR+VV  ++ G PVT +D+G  GA+ AL+K
Sbjct  189  REDGFDITVASEIMAILCLATDLADLKERLGRIVVGYTRDGKPVTAEDLGVAGAMTALLK  248

Query  691  DAIKPNLMQSLEGTPVLVHAGPFANISIGASSIIADKLALKLAGTEPDEDHEAKTGFVVT  750
            DAIKPNL+Q+LEGTP  VH GPFANI+ G +S+IA K+ALKLA             +VVT
Sbjct  249  DAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSVIATKIALKLA------------DYVVT  296

Query  751  EAGFDFTMGGERFFNIKCRSSGLSPDCVVIVATVRALKVHGGGPEISPGAPLHEIYRTEN  810
            EAGF   +G E+FF+IKCR SGL PD VV+VATVRALK+HG       G    E    EN
Sbjct  297  EAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHG-------GVGKDE-LTEEN  348

Query  811  TEILRKGCVNLKKHIQNAKMYGVPVVVAINRFETDTEAEIAIVREEAIAAGAEDAIPANH  870
             E L KG  NL+KHI+N K +GVPVVVAINRF TDT+AEI +VRE    AG  DA  + H
Sbjct  349  LEALEKGLANLEKHIENVKKFGVPVVVAINRFPTDTDAEIELVRELC-EAGGVDAALSEH  407

Query  871  WAEGGAGAVDLAKGVL-AASSKPKDFKLLYDLEGSIQERIERIGKAMYGAEKVEFSELAQ  929
            WA+GG GA++LA+ V+ A   +P +FK LYDLE SI+E+IE I K +YGA+ VE+S  A+
Sbjct  408  WAKGGEGAIELAEAVVEACEEEPSNFKFLYDLELSIEEKIETIAKEIYGADGVEYSPKAK  467

Query  930  KKVDTYTAQGFSNLPICIAKTQYSLSHDPALKGAPTGFTIPIRDVRLAVGGGYL  983
            KK+      GF  LP+C+AKTQYSLS DP LKGAPTGFT+P+RDVRL+ G G++
Sbjct  468  KKLKRIEELGFGKLPVCMAKTQYSLSDDPKLKGAPTGFTLPVRDVRLSAGAGFI  521


>CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
NAD(P)-binding domain.  
Length=160

 Score = 275 bits (706),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 100/166 (60%), Positives = 118/166 (71%), Gaps = 8/166 (5%)

Query  206  INIGELAKRGGHPLFVPCTPLAVMDLLKASGVNPAGKEAVVLGRSDIVGSPVSYLLKNAD  265
             N+G L    G P FVPCTP  +M+LLK  G++ AGK  VV+GRS+IVG P++ LL NA+
Sbjct  3    YNLGRLVL--GKPCFVPCTPRGIMELLKRYGIDLAGKNVVVVGRSNIVGKPLALLLLNAN  60

Query  266  ATVTVCHSKTPDIPRIVKNADIVVAAIGKAEFVKGDWLKPGAVVIDVGINYKPDPSKKSG  325
            ATVTVCHSKT D+  I + ADIVV A+GK E +K DW+KPGAVVIDVGIN          
Sbjct  61   ATVTVCHSKTKDLAEITREADIVVVAVGKPELIKADWIKPGAVVIDVGINR------VGN  114

Query  326  QRLVGDVDFEAAVEVASQITPVPGGVGPMTVAMLLKNVVTSAKAYF  371
             +LVGDVDFE   E AS ITPVPGGVGPMTVAMLL+N V +AK   
Sbjct  115  GKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKRQL  160


>CDD:459930 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
catalytic domain.  
Length=115

 Score = 181 bits (462),  Expect = 5e-54, Method: Composition-based stats.
 Identities = 59/117 (50%), Positives = 72/117 (62%), Gaps = 2/117 (2%)

Query  85   IDGTAIAKSIREGLKAEIAKIQESNPRFKPSLVIFQVGNRSDSSTYVRMKLKAAEEANIL  144
            IDG AIAK IRE LK E+A ++      KP L +  VG+   S  YVR K KA EE  I 
Sbjct  1    IDGKAIAKKIREELKEEVAALKA--GGRKPGLAVILVGDDPASQVYVRNKKKACEEVGIE  58

Query  145  CKIVNFPESISQPEILQEITKANNDPSVHGILVQLPLPSHLSEHTVTSAVADEKDVD  201
             +++  PE  ++ E+L  I K N DPSVHGILVQLPLP H+ E  V  A+  EKDVD
Sbjct  59   SELIRLPEDTTEEELLALIDKLNADPSVHGILVQLPLPKHIDEEKVLEAIDPEKDVD  115



Lambda      K        H        a         alpha
   0.317    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1255882012


Query= TCONS_00022100

Length=790
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase         961     0.0  
CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogena...  242     2e-76


>CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase.  
Length=555

 Score = 961 bits (2488),  Expect = 0.0, Method: Composition-based stats.
 Identities = 338/629 (54%), Positives = 419/629 (67%), Gaps = 75/629 (12%)

Query  163  PSDIAISRAQYPKPITQVAAEVGIAPHELEPYGHTKAKISLSVLDRLAHRRNGRYVLVCG  222
            PSDI I++A   KPIT++A ++GI   ELEPYG  KAK+SL VL+ L  R +G+ +LV  
Sbjct  1    PSDIEIAQAAKLKPITEIAEKLGIPEDELEPYGKYKAKVSLDVLELLKDRPDGKLILVTA  60

Query  223  ITPTPLGEGKSTTTLGLTQALGAHLNRIVFANVRQPSQGPTFGIKGGAAGGGYSQVIPMD  282
            ITPTP GEGK+TTT+GL QAL   L +   A +R+PS GP FGIKGGAAGGGYSQV+PM+
Sbjct  61   ITPTPAGEGKTTTTIGLAQALN-RLGKKAIAALREPSLGPVFGIKGGAAGGGYSQVVPME  119

Query  283  EFNLHLTGDIHAITAANNLLAAAIETRMFHEATQKDAALYKRLVPVKKGKREFQPIMFRR  342
            + NLH TGDIHAITAANNLLAAAI+  +FH                              
Sbjct  120  DINLHFTGDIHAITAANNLLAAAIDNHIFHGNE---------------------------  152

Query  343  LKKLGITKTNPDDLTEEEIRRFARLDIDPQTITWRRVLDVNDRHLRGITVGQAPTERGLS  402
                                    LDIDP+ ITW+RVLD+NDR LR I +G    E G+ 
Sbjct  153  ------------------------LDIDPRRITWKRVLDMNDRALRNIVIGLGGKENGVP  188

Query  403  RETGFDISVASECMAILALSNSLEDMRERLGRMVVATSKSGDPVTCDDIGAGGALAALMK  462
            RE GFDI+VASE MAIL L+  L D++ERLGR+VV  ++ G PVT +D+G  GA+ AL+K
Sbjct  189  REDGFDITVASEIMAILCLATDLADLKERLGRIVVGYTRDGKPVTAEDLGVAGAMTALLK  248

Query  463  DAIKPNLMQSLEGTPVLVHAGPFANISIGASSIIADKLALKLAGTEPDEDHEAKTGFVVT  522
            DAIKPNL+Q+LEGTP  VH GPFANI+ G +S+IA K+ALKLA             +VVT
Sbjct  249  DAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSVIATKIALKLA------------DYVVT  296

Query  523  EAGFDFTMGGERFFNIKCRSSGLSPDCVVIVATVRALKVHGGGPEISPGAPLHEIYRTEN  582
            EAGF   +G E+FF+IKCR SGL PD VV+VATVRALK+HG       G    E    EN
Sbjct  297  EAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHG-------GVGKDE-LTEEN  348

Query  583  TEILRKGCVNLKKHIQNAKMYGVPVVVAINRFETDTEAEIAIVREEAIAAGAEDAIPANH  642
             E L KG  NL+KHI+N K +GVPVVVAINRF TDT+AEI +VRE    AG  DA  + H
Sbjct  349  LEALEKGLANLEKHIENVKKFGVPVVVAINRFPTDTDAEIELVRELC-EAGGVDAALSEH  407

Query  643  WAEGGAGAVDLAKGVL-AASSKPKDFKLLYDLEGSIQERIERIGKAMYGAEKVEFSELAQ  701
            WA+GG GA++LA+ V+ A   +P +FK LYDLE SI+E+IE I K +YGA+ VE+S  A+
Sbjct  408  WAKGGEGAIELAEAVVEACEEEPSNFKFLYDLELSIEEKIETIAKEIYGADGVEYSPKAK  467

Query  702  KKVDTYTAQGFSNLPICIAKTQYSLSHDPALKGAPTGFTIPIRDVRLAVGGGYLYALAAD  761
            KK+      GF  LP+C+AKTQYSLS DP LKGAPTGFT+P+RDVRL+ G G++ AL  D
Sbjct  468  KKLKRIEELGFGKLPVCMAKTQYSLSDDPKLKGAPTGFTLPVRDVRLSAGAGFIVALTGD  527

Query  762  IQTIPGLPTAPGYLNVDIDTETGEIDGLF  790
            I T+PGLP  P   N+D+D + G+I GLF
Sbjct  528  IMTMPGLPKRPAAENIDVDED-GKITGLF  555


>CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
NAD(P)-binding domain.  
Length=160

 Score = 242 bits (621),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 89/143 (62%), Positives = 105/143 (73%), Gaps = 6/143 (4%)

Query  1    MDLLKASGVNPAGKEAVVLGRSDIVGSPVSYLLKNADATVTVCHSKTPDIPRIVKNADIV  60
            M+LLK  G++ AGK  VV+GRS+IVG P++ LL NA+ATVTVCHSKT D+  I + ADIV
Sbjct  24   MELLKRYGIDLAGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSKTKDLAEITREADIV  83

Query  61   VAAIGKAEFVKGDWLKPGAVVIDVGINYKPDPSKKSGQRLVGDVDFEAAVEVASQITPVP  120
            V A+GK E +K DW+KPGAVVIDVGIN           +LVGDVDFE   E AS ITPVP
Sbjct  84   VVAVGKPELIKADWIKPGAVVIDVGINR------VGNGKLVGDVDFENVKEKASAITPVP  137

Query  121  GGVGPMTVAMLLKNVVTSAKAYF  143
            GGVGPMTVAMLL+N V +AK   
Sbjct  138  GGVGPMTVAMLLQNTVEAAKRQL  160



Lambda      K        H        a         alpha
   0.317    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1012785792


Query= TCONS_00022101

Length=983
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase         915     0.0  
CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogena...  275     1e-87
CDD:459930 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase...  181     5e-54


>CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase.  
Length=555

 Score = 915 bits (2369),  Expect = 0.0, Method: Composition-based stats.
 Identities = 320/594 (54%), Positives = 396/594 (67%), Gaps = 74/594 (12%)

Query  391  PSDIAISRAQYPKPITQVAAEVGIAPHELEPYGHTKAKISLSVLDRLAHRRNGRYVLVCG  450
            PSDI I++A   KPIT++A ++GI   ELEPYG  KAK+SL VL+ L  R +G+ +LV  
Sbjct  1    PSDIEIAQAAKLKPITEIAEKLGIPEDELEPYGKYKAKVSLDVLELLKDRPDGKLILVTA  60

Query  451  ITPTPLGEGKSTTTLGLTQALGAHLNRIVFANVRQPSQGPTFGIKGGAAGGGYSQVIPMD  510
            ITPTP GEGK+TTT+GL QAL   L +   A +R+PS GP FGIKGGAAGGGYSQV+PM+
Sbjct  61   ITPTPAGEGKTTTTIGLAQALN-RLGKKAIAALREPSLGPVFGIKGGAAGGGYSQVVPME  119

Query  511  EFNLHLTGDIHAITAANNLLAAAIETRMFHEATQKDAALYKRLVPVKKGKREFQPIMFRR  570
            + NLH TGDIHAITAANNLLAAAI+  +FH                              
Sbjct  120  DINLHFTGDIHAITAANNLLAAAIDNHIFHGNE---------------------------  152

Query  571  LKKLGITKTNPDDLTEEEIRRFARLDIDPQTITWRRVLDVNDRHLRGITVGQAPTERGLS  630
                                    LDIDP+ ITW+RVLD+NDR LR I +G    E G+ 
Sbjct  153  ------------------------LDIDPRRITWKRVLDMNDRALRNIVIGLGGKENGVP  188

Query  631  RETGFDISVASECMAILALSNSLEDMRERLGRMVVATSKSGDPVTCDDIGAGGALAALMK  690
            RE GFDI+VASE MAIL L+  L D++ERLGR+VV  ++ G PVT +D+G  GA+ AL+K
Sbjct  189  REDGFDITVASEIMAILCLATDLADLKERLGRIVVGYTRDGKPVTAEDLGVAGAMTALLK  248

Query  691  DAIKPNLMQSLEGTPVLVHAGPFANISIGASSIIADKLALKLAGTEPDEDHEAKTGFVVT  750
            DAIKPNL+Q+LEGTP  VH GPFANI+ G +S+IA K+ALKLA             +VVT
Sbjct  249  DAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSVIATKIALKLA------------DYVVT  296

Query  751  EAGFDFTMGGERFFNIKCRSSGLSPDCVVIVATVRALKVHGGGPEISPGAPLHEIYRTEN  810
            EAGF   +G E+FF+IKCR SGL PD VV+VATVRALK+HG       G    E    EN
Sbjct  297  EAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHG-------GVGKDE-LTEEN  348

Query  811  TEILRKGCVNLKKHIQNAKMYGVPVVVAINRFETDTEAEIAIVREEAIAAGAEDAIPANH  870
             E L KG  NL+KHI+N K +GVPVVVAINRF TDT+AEI +VRE    AG  DA  + H
Sbjct  349  LEALEKGLANLEKHIENVKKFGVPVVVAINRFPTDTDAEIELVRELC-EAGGVDAALSEH  407

Query  871  WAEGGAGAVDLAKGVL-AASSKPKDFKLLYDLEGSIQERIERIGKAMYGAEKVEFSELAQ  929
            WA+GG GA++LA+ V+ A   +P +FK LYDLE SI+E+IE I K +YGA+ VE+S  A+
Sbjct  408  WAKGGEGAIELAEAVVEACEEEPSNFKFLYDLELSIEEKIETIAKEIYGADGVEYSPKAK  467

Query  930  KKVDTYTAQGFSNLPICIAKTQYSLSHDPALKGAPTGFTIPIRDVRLAVGGGYL  983
            KK+      GF  LP+C+AKTQYSLS DP LKGAPTGFT+P+RDVRL+ G G++
Sbjct  468  KKLKRIEELGFGKLPVCMAKTQYSLSDDPKLKGAPTGFTLPVRDVRLSAGAGFI  521


>CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
NAD(P)-binding domain.  
Length=160

 Score = 275 bits (706),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 100/166 (60%), Positives = 118/166 (71%), Gaps = 8/166 (5%)

Query  206  INIGELAKRGGHPLFVPCTPLAVMDLLKASGVNPAGKEAVVLGRSDIVGSPVSYLLKNAD  265
             N+G L    G P FVPCTP  +M+LLK  G++ AGK  VV+GRS+IVG P++ LL NA+
Sbjct  3    YNLGRLVL--GKPCFVPCTPRGIMELLKRYGIDLAGKNVVVVGRSNIVGKPLALLLLNAN  60

Query  266  ATVTVCHSKTPDIPRIVKNADIVVAAIGKAEFVKGDWLKPGAVVIDVGINYKPDPSKKSG  325
            ATVTVCHSKT D+  I + ADIVV A+GK E +K DW+KPGAVVIDVGIN          
Sbjct  61   ATVTVCHSKTKDLAEITREADIVVVAVGKPELIKADWIKPGAVVIDVGINR------VGN  114

Query  326  QRLVGDVDFEAAVEVASQITPVPGGVGPMTVAMLLKNVVTSAKAYF  371
             +LVGDVDFE   E AS ITPVPGGVGPMTVAMLL+N V +AK   
Sbjct  115  GKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKRQL  160


>CDD:459930 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
catalytic domain.  
Length=115

 Score = 181 bits (462),  Expect = 5e-54, Method: Composition-based stats.
 Identities = 59/117 (50%), Positives = 72/117 (62%), Gaps = 2/117 (2%)

Query  85   IDGTAIAKSIREGLKAEIAKIQESNPRFKPSLVIFQVGNRSDSSTYVRMKLKAAEEANIL  144
            IDG AIAK IRE LK E+A ++      KP L +  VG+   S  YVR K KA EE  I 
Sbjct  1    IDGKAIAKKIREELKEEVAALKA--GGRKPGLAVILVGDDPASQVYVRNKKKACEEVGIE  58

Query  145  CKIVNFPESISQPEILQEITKANNDPSVHGILVQLPLPSHLSEHTVTSAVADEKDVD  201
             +++  PE  ++ E+L  I K N DPSVHGILVQLPLP H+ E  V  A+  EKDVD
Sbjct  59   SELIRLPEDTTEEELLALIDKLNADPSVHGILVQLPLPKHIDEEKVLEAIDPEKDVD  115



Lambda      K        H        a         alpha
   0.317    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1255882012


Query= TCONS_00026926

Length=790
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase         961     0.0  
CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogena...  242     2e-76


>CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase.  
Length=555

 Score = 961 bits (2488),  Expect = 0.0, Method: Composition-based stats.
 Identities = 338/629 (54%), Positives = 419/629 (67%), Gaps = 75/629 (12%)

Query  163  PSDIAISRAQYPKPITQVAAEVGIAPHELEPYGHTKAKISLSVLDRLAHRRNGRYVLVCG  222
            PSDI I++A   KPIT++A ++GI   ELEPYG  KAK+SL VL+ L  R +G+ +LV  
Sbjct  1    PSDIEIAQAAKLKPITEIAEKLGIPEDELEPYGKYKAKVSLDVLELLKDRPDGKLILVTA  60

Query  223  ITPTPLGEGKSTTTLGLTQALGAHLNRIVFANVRQPSQGPTFGIKGGAAGGGYSQVIPMD  282
            ITPTP GEGK+TTT+GL QAL   L +   A +R+PS GP FGIKGGAAGGGYSQV+PM+
Sbjct  61   ITPTPAGEGKTTTTIGLAQALN-RLGKKAIAALREPSLGPVFGIKGGAAGGGYSQVVPME  119

Query  283  EFNLHLTGDIHAITAANNLLAAAIETRMFHEATQKDAALYKRLVPVKKGKREFQPIMFRR  342
            + NLH TGDIHAITAANNLLAAAI+  +FH                              
Sbjct  120  DINLHFTGDIHAITAANNLLAAAIDNHIFHGNE---------------------------  152

Query  343  LKKLGITKTNPDDLTEEEIRRFARLDIDPQTITWRRVLDVNDRHLRGITVGQAPTERGLS  402
                                    LDIDP+ ITW+RVLD+NDR LR I +G    E G+ 
Sbjct  153  ------------------------LDIDPRRITWKRVLDMNDRALRNIVIGLGGKENGVP  188

Query  403  RETGFDISVASECMAILALSNSLEDMRERLGRMVVATSKSGDPVTCDDIGAGGALAALMK  462
            RE GFDI+VASE MAIL L+  L D++ERLGR+VV  ++ G PVT +D+G  GA+ AL+K
Sbjct  189  REDGFDITVASEIMAILCLATDLADLKERLGRIVVGYTRDGKPVTAEDLGVAGAMTALLK  248

Query  463  DAIKPNLMQSLEGTPVLVHAGPFANISIGASSIIADKLALKLAGTEPDEDHEAKTGFVVT  522
            DAIKPNL+Q+LEGTP  VH GPFANI+ G +S+IA K+ALKLA             +VVT
Sbjct  249  DAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSVIATKIALKLA------------DYVVT  296

Query  523  EAGFDFTMGGERFFNIKCRSSGLSPDCVVIVATVRALKVHGGGPEISPGAPLHEIYRTEN  582
            EAGF   +G E+FF+IKCR SGL PD VV+VATVRALK+HG       G    E    EN
Sbjct  297  EAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHG-------GVGKDE-LTEEN  348

Query  583  TEILRKGCVNLKKHIQNAKMYGVPVVVAINRFETDTEAEIAIVREEAIAAGAEDAIPANH  642
             E L KG  NL+KHI+N K +GVPVVVAINRF TDT+AEI +VRE    AG  DA  + H
Sbjct  349  LEALEKGLANLEKHIENVKKFGVPVVVAINRFPTDTDAEIELVRELC-EAGGVDAALSEH  407

Query  643  WAEGGAGAVDLAKGVL-AASSKPKDFKLLYDLEGSIQERIERIGKAMYGAEKVEFSELAQ  701
            WA+GG GA++LA+ V+ A   +P +FK LYDLE SI+E+IE I K +YGA+ VE+S  A+
Sbjct  408  WAKGGEGAIELAEAVVEACEEEPSNFKFLYDLELSIEEKIETIAKEIYGADGVEYSPKAK  467

Query  702  KKVDTYTAQGFSNLPICIAKTQYSLSHDPALKGAPTGFTIPIRDVRLAVGGGYLYALAAD  761
            KK+      GF  LP+C+AKTQYSLS DP LKGAPTGFT+P+RDVRL+ G G++ AL  D
Sbjct  468  KKLKRIEELGFGKLPVCMAKTQYSLSDDPKLKGAPTGFTLPVRDVRLSAGAGFIVALTGD  527

Query  762  IQTIPGLPTAPGYLNVDIDTETGEIDGLF  790
            I T+PGLP  P   N+D+D + G+I GLF
Sbjct  528  IMTMPGLPKRPAAENIDVDED-GKITGLF  555


>CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
NAD(P)-binding domain.  
Length=160

 Score = 242 bits (621),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 89/143 (62%), Positives = 105/143 (73%), Gaps = 6/143 (4%)

Query  1    MDLLKASGVNPAGKEAVVLGRSDIVGSPVSYLLKNADATVTVCHSKTPDIPRIVKNADIV  60
            M+LLK  G++ AGK  VV+GRS+IVG P++ LL NA+ATVTVCHSKT D+  I + ADIV
Sbjct  24   MELLKRYGIDLAGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSKTKDLAEITREADIV  83

Query  61   VAAIGKAEFVKGDWLKPGAVVIDVGINYKPDPSKKSGQRLVGDVDFEAAVEVASQITPVP  120
            V A+GK E +K DW+KPGAVVIDVGIN           +LVGDVDFE   E AS ITPVP
Sbjct  84   VVAVGKPELIKADWIKPGAVVIDVGINR------VGNGKLVGDVDFENVKEKASAITPVP  137

Query  121  GGVGPMTVAMLLKNVVTSAKAYF  143
            GGVGPMTVAMLL+N V +AK   
Sbjct  138  GGVGPMTVAMLLQNTVEAAKRQL  160



Lambda      K        H        a         alpha
   0.317    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0712    0.140     1.90     42.6     43.6 

Effective search space used: 1012785792


Query= TCONS_00022102

Length=1018
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase         971     0.0  
CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogena...  275     2e-87
CDD:459930 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase...  181     6e-54


>CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase.  
Length=555

 Score = 971 bits (2513),  Expect = 0.0, Method: Composition-based stats.
 Identities = 338/629 (54%), Positives = 419/629 (67%), Gaps = 75/629 (12%)

Query  391   PSDIAISRAQYPKPITQVAAEVGIAPHELEPYGHTKAKISLSVLDRLAHRRNGRYVLVCG  450
             PSDI I++A   KPIT++A ++GI   ELEPYG  KAK+SL VL+ L  R +G+ +LV  
Sbjct  1     PSDIEIAQAAKLKPITEIAEKLGIPEDELEPYGKYKAKVSLDVLELLKDRPDGKLILVTA  60

Query  451   ITPTPLGEGKSTTTLGLTQALGAHLNRIVFANVRQPSQGPTFGIKGGAAGGGYSQVIPMD  510
             ITPTP GEGK+TTT+GL QAL   L +   A +R+PS GP FGIKGGAAGGGYSQV+PM+
Sbjct  61    ITPTPAGEGKTTTTIGLAQALN-RLGKKAIAALREPSLGPVFGIKGGAAGGGYSQVVPME  119

Query  511   EFNLHLTGDIHAITAANNLLAAAIETRMFHEATQKDAALYKRLVPVKKGKREFQPIMFRR  570
             + NLH TGDIHAITAANNLLAAAI+  +FH                              
Sbjct  120   DINLHFTGDIHAITAANNLLAAAIDNHIFHGNE---------------------------  152

Query  571   LKKLGITKTNPDDLTEEEIRRFARLDIDPQTITWRRVLDVNDRHLRGITVGQAPTERGLS  630
                                     LDIDP+ ITW+RVLD+NDR LR I +G    E G+ 
Sbjct  153   ------------------------LDIDPRRITWKRVLDMNDRALRNIVIGLGGKENGVP  188

Query  631   RETGFDISVASECMAILALSNSLEDMRERLGRMVVATSKSGDPVTCDDIGAGGALAALMK  690
             RE GFDI+VASE MAIL L+  L D++ERLGR+VV  ++ G PVT +D+G  GA+ AL+K
Sbjct  189   REDGFDITVASEIMAILCLATDLADLKERLGRIVVGYTRDGKPVTAEDLGVAGAMTALLK  248

Query  691   DAIKPNLMQSLEGTPVLVHAGPFANISIGASSIIADKLALKLAGTEPDEDHEAKTGFVVT  750
             DAIKPNL+Q+LEGTP  VH GPFANI+ G +S+IA K+ALKLA             +VVT
Sbjct  249   DAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSVIATKIALKLA------------DYVVT  296

Query  751   EAGFDFTMGGERFFNIKCRSSGLSPDCVVIVATVRALKVHGGGPEISPGAPLHEIYRTEN  810
             EAGF   +G E+FF+IKCR SGL PD VV+VATVRALK+HG       G    E    EN
Sbjct  297   EAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHG-------GVGKDE-LTEEN  348

Query  811   TEILRKGCVNLKKHIQNAKMYGVPVVVAINRFETDTEAEIAIVREEAIAAGAEDAIPANH  870
              E L KG  NL+KHI+N K +GVPVVVAINRF TDT+AEI +VRE    AG  DA  + H
Sbjct  349   LEALEKGLANLEKHIENVKKFGVPVVVAINRFPTDTDAEIELVRELC-EAGGVDAALSEH  407

Query  871   WAEGGAGAVDLAKGVL-AASSKPKDFKLLYDLEGSIQERIERIGKAMYGAEKVEFSELAQ  929
             WA+GG GA++LA+ V+ A   +P +FK LYDLE SI+E+IE I K +YGA+ VE+S  A+
Sbjct  408   WAKGGEGAIELAEAVVEACEEEPSNFKFLYDLELSIEEKIETIAKEIYGADGVEYSPKAK  467

Query  930   KKVDTYTAQGFSNLPICIAKTQYSLSHDPALKGAPTGFTIPIRDVRLAVGGGYLYALAAD  989
             KK+      GF  LP+C+AKTQYSLS DP LKGAPTGFT+P+RDVRL+ G G++ AL  D
Sbjct  468   KKLKRIEELGFGKLPVCMAKTQYSLSDDPKLKGAPTGFTLPVRDVRLSAGAGFIVALTGD  527

Query  990   IQTIPGLPTAPGYLNVDIDTETGEIDGLF  1018
             I T+PGLP  P   N+D+D + G+I GLF
Sbjct  528   IMTMPGLPKRPAAENIDVDED-GKITGLF  555


>CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
NAD(P)-binding domain.  
Length=160

 Score = 275 bits (706),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 100/166 (60%), Positives = 118/166 (71%), Gaps = 8/166 (5%)

Query  206  INIGELAKRGGHPLFVPCTPLAVMDLLKASGVNPAGKEAVVLGRSDIVGSPVSYLLKNAD  265
             N+G L    G P FVPCTP  +M+LLK  G++ AGK  VV+GRS+IVG P++ LL NA+
Sbjct  3    YNLGRLVL--GKPCFVPCTPRGIMELLKRYGIDLAGKNVVVVGRSNIVGKPLALLLLNAN  60

Query  266  ATVTVCHSKTPDIPRIVKNADIVVAAIGKAEFVKGDWLKPGAVVIDVGINYKPDPSKKSG  325
            ATVTVCHSKT D+  I + ADIVV A+GK E +K DW+KPGAVVIDVGIN          
Sbjct  61   ATVTVCHSKTKDLAEITREADIVVVAVGKPELIKADWIKPGAVVIDVGINR------VGN  114

Query  326  QRLVGDVDFEAAVEVASQITPVPGGVGPMTVAMLLKNVVTSAKAYF  371
             +LVGDVDFE   E AS ITPVPGGVGPMTVAMLL+N V +AK   
Sbjct  115  GKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKRQL  160


>CDD:459930 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
catalytic domain.  
Length=115

 Score = 181 bits (462),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 59/117 (50%), Positives = 72/117 (62%), Gaps = 2/117 (2%)

Query  85   IDGTAIAKSIREGLKAEIAKIQESNPRFKPSLVIFQVGNRSDSSTYVRMKLKAAEEANIL  144
            IDG AIAK IRE LK E+A ++      KP L +  VG+   S  YVR K KA EE  I 
Sbjct  1    IDGKAIAKKIREELKEEVAALKA--GGRKPGLAVILVGDDPASQVYVRNKKKACEEVGIE  58

Query  145  CKIVNFPESISQPEILQEITKANNDPSVHGILVQLPLPSHLSEHTVTSAVADEKDVD  201
             +++  PE  ++ E+L  I K N DPSVHGILVQLPLP H+ E  V  A+  EKDVD
Sbjct  59   SELIRLPEDTTEEELLALIDKLNADPSVHGILVQLPLPKHIDEEKVLEAIDPEKDVD  115



Lambda      K        H        a         alpha
   0.317    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1305437672


Query= TCONS_00026927

Length=1018
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase         971     0.0  
CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogena...  275     2e-87
CDD:459930 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase...  181     6e-54


>CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase.  
Length=555

 Score = 971 bits (2513),  Expect = 0.0, Method: Composition-based stats.
 Identities = 338/629 (54%), Positives = 419/629 (67%), Gaps = 75/629 (12%)

Query  391   PSDIAISRAQYPKPITQVAAEVGIAPHELEPYGHTKAKISLSVLDRLAHRRNGRYVLVCG  450
             PSDI I++A   KPIT++A ++GI   ELEPYG  KAK+SL VL+ L  R +G+ +LV  
Sbjct  1     PSDIEIAQAAKLKPITEIAEKLGIPEDELEPYGKYKAKVSLDVLELLKDRPDGKLILVTA  60

Query  451   ITPTPLGEGKSTTTLGLTQALGAHLNRIVFANVRQPSQGPTFGIKGGAAGGGYSQVIPMD  510
             ITPTP GEGK+TTT+GL QAL   L +   A +R+PS GP FGIKGGAAGGGYSQV+PM+
Sbjct  61    ITPTPAGEGKTTTTIGLAQALN-RLGKKAIAALREPSLGPVFGIKGGAAGGGYSQVVPME  119

Query  511   EFNLHLTGDIHAITAANNLLAAAIETRMFHEATQKDAALYKRLVPVKKGKREFQPIMFRR  570
             + NLH TGDIHAITAANNLLAAAI+  +FH                              
Sbjct  120   DINLHFTGDIHAITAANNLLAAAIDNHIFHGNE---------------------------  152

Query  571   LKKLGITKTNPDDLTEEEIRRFARLDIDPQTITWRRVLDVNDRHLRGITVGQAPTERGLS  630
                                     LDIDP+ ITW+RVLD+NDR LR I +G    E G+ 
Sbjct  153   ------------------------LDIDPRRITWKRVLDMNDRALRNIVIGLGGKENGVP  188

Query  631   RETGFDISVASECMAILALSNSLEDMRERLGRMVVATSKSGDPVTCDDIGAGGALAALMK  690
             RE GFDI+VASE MAIL L+  L D++ERLGR+VV  ++ G PVT +D+G  GA+ AL+K
Sbjct  189   REDGFDITVASEIMAILCLATDLADLKERLGRIVVGYTRDGKPVTAEDLGVAGAMTALLK  248

Query  691   DAIKPNLMQSLEGTPVLVHAGPFANISIGASSIIADKLALKLAGTEPDEDHEAKTGFVVT  750
             DAIKPNL+Q+LEGTP  VH GPFANI+ G +S+IA K+ALKLA             +VVT
Sbjct  249   DAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSVIATKIALKLA------------DYVVT  296

Query  751   EAGFDFTMGGERFFNIKCRSSGLSPDCVVIVATVRALKVHGGGPEISPGAPLHEIYRTEN  810
             EAGF   +G E+FF+IKCR SGL PD VV+VATVRALK+HG       G    E    EN
Sbjct  297   EAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHG-------GVGKDE-LTEEN  348

Query  811   TEILRKGCVNLKKHIQNAKMYGVPVVVAINRFETDTEAEIAIVREEAIAAGAEDAIPANH  870
              E L KG  NL+KHI+N K +GVPVVVAINRF TDT+AEI +VRE    AG  DA  + H
Sbjct  349   LEALEKGLANLEKHIENVKKFGVPVVVAINRFPTDTDAEIELVRELC-EAGGVDAALSEH  407

Query  871   WAEGGAGAVDLAKGVL-AASSKPKDFKLLYDLEGSIQERIERIGKAMYGAEKVEFSELAQ  929
             WA+GG GA++LA+ V+ A   +P +FK LYDLE SI+E+IE I K +YGA+ VE+S  A+
Sbjct  408   WAKGGEGAIELAEAVVEACEEEPSNFKFLYDLELSIEEKIETIAKEIYGADGVEYSPKAK  467

Query  930   KKVDTYTAQGFSNLPICIAKTQYSLSHDPALKGAPTGFTIPIRDVRLAVGGGYLYALAAD  989
             KK+      GF  LP+C+AKTQYSLS DP LKGAPTGFT+P+RDVRL+ G G++ AL  D
Sbjct  468   KKLKRIEELGFGKLPVCMAKTQYSLSDDPKLKGAPTGFTLPVRDVRLSAGAGFIVALTGD  527

Query  990   IQTIPGLPTAPGYLNVDIDTETGEIDGLF  1018
             I T+PGLP  P   N+D+D + G+I GLF
Sbjct  528   IMTMPGLPKRPAAENIDVDED-GKITGLF  555


>CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
NAD(P)-binding domain.  
Length=160

 Score = 275 bits (706),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 100/166 (60%), Positives = 118/166 (71%), Gaps = 8/166 (5%)

Query  206  INIGELAKRGGHPLFVPCTPLAVMDLLKASGVNPAGKEAVVLGRSDIVGSPVSYLLKNAD  265
             N+G L    G P FVPCTP  +M+LLK  G++ AGK  VV+GRS+IVG P++ LL NA+
Sbjct  3    YNLGRLVL--GKPCFVPCTPRGIMELLKRYGIDLAGKNVVVVGRSNIVGKPLALLLLNAN  60

Query  266  ATVTVCHSKTPDIPRIVKNADIVVAAIGKAEFVKGDWLKPGAVVIDVGINYKPDPSKKSG  325
            ATVTVCHSKT D+  I + ADIVV A+GK E +K DW+KPGAVVIDVGIN          
Sbjct  61   ATVTVCHSKTKDLAEITREADIVVVAVGKPELIKADWIKPGAVVIDVGINR------VGN  114

Query  326  QRLVGDVDFEAAVEVASQITPVPGGVGPMTVAMLLKNVVTSAKAYF  371
             +LVGDVDFE   E AS ITPVPGGVGPMTVAMLL+N V +AK   
Sbjct  115  GKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKRQL  160


>CDD:459930 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
catalytic domain.  
Length=115

 Score = 181 bits (462),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 59/117 (50%), Positives = 72/117 (62%), Gaps = 2/117 (2%)

Query  85   IDGTAIAKSIREGLKAEIAKIQESNPRFKPSLVIFQVGNRSDSSTYVRMKLKAAEEANIL  144
            IDG AIAK IRE LK E+A ++      KP L +  VG+   S  YVR K KA EE  I 
Sbjct  1    IDGKAIAKKIREELKEEVAALKA--GGRKPGLAVILVGDDPASQVYVRNKKKACEEVGIE  58

Query  145  CKIVNFPESISQPEILQEITKANNDPSVHGILVQLPLPSHLSEHTVTSAVADEKDVD  201
             +++  PE  ++ E+L  I K N DPSVHGILVQLPLP H+ E  V  A+  EKDVD
Sbjct  59   SELIRLPEDTTEEELLALIDKLNADPSVHGILVQLPLPKHIDEEKVLEAIDPEKDVD  115



Lambda      K        H        a         alpha
   0.317    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1305437672


Query= TCONS_00022103

Length=755
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase         906     0.0  
CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogena...  242     1e-76


>CDD:460143 pfam01268, FTHFS, Formate--tetrahydrofolate ligase.  
Length=555

 Score = 906 bits (2345),  Expect = 0.0, Method: Composition-based stats.
 Identities = 320/594 (54%), Positives = 396/594 (67%), Gaps = 74/594 (12%)

Query  163  PSDIAISRAQYPKPITQVAAEVGIAPHELEPYGHTKAKISLSVLDRLAHRRNGRYVLVCG  222
            PSDI I++A   KPIT++A ++GI   ELEPYG  KAK+SL VL+ L  R +G+ +LV  
Sbjct  1    PSDIEIAQAAKLKPITEIAEKLGIPEDELEPYGKYKAKVSLDVLELLKDRPDGKLILVTA  60

Query  223  ITPTPLGEGKSTTTLGLTQALGAHLNRIVFANVRQPSQGPTFGIKGGAAGGGYSQVIPMD  282
            ITPTP GEGK+TTT+GL QAL   L +   A +R+PS GP FGIKGGAAGGGYSQV+PM+
Sbjct  61   ITPTPAGEGKTTTTIGLAQALN-RLGKKAIAALREPSLGPVFGIKGGAAGGGYSQVVPME  119

Query  283  EFNLHLTGDIHAITAANNLLAAAIETRMFHEATQKDAALYKRLVPVKKGKREFQPIMFRR  342
            + NLH TGDIHAITAANNLLAAAI+  +FH                              
Sbjct  120  DINLHFTGDIHAITAANNLLAAAIDNHIFHGNE---------------------------  152

Query  343  LKKLGITKTNPDDLTEEEIRRFARLDIDPQTITWRRVLDVNDRHLRGITVGQAPTERGLS  402
                                    LDIDP+ ITW+RVLD+NDR LR I +G    E G+ 
Sbjct  153  ------------------------LDIDPRRITWKRVLDMNDRALRNIVIGLGGKENGVP  188

Query  403  RETGFDISVASECMAILALSNSLEDMRERLGRMVVATSKSGDPVTCDDIGAGGALAALMK  462
            RE GFDI+VASE MAIL L+  L D++ERLGR+VV  ++ G PVT +D+G  GA+ AL+K
Sbjct  189  REDGFDITVASEIMAILCLATDLADLKERLGRIVVGYTRDGKPVTAEDLGVAGAMTALLK  248

Query  463  DAIKPNLMQSLEGTPVLVHAGPFANISIGASSIIADKLALKLAGTEPDEDHEAKTGFVVT  522
            DAIKPNL+Q+LEGTP  VH GPFANI+ G +S+IA K+ALKLA             +VVT
Sbjct  249  DAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSVIATKIALKLA------------DYVVT  296

Query  523  EAGFDFTMGGERFFNIKCRSSGLSPDCVVIVATVRALKVHGGGPEISPGAPLHEIYRTEN  582
            EAGF   +G E+FF+IKCR SGL PD VV+VATVRALK+HG       G    E    EN
Sbjct  297  EAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHG-------GVGKDE-LTEEN  348

Query  583  TEILRKGCVNLKKHIQNAKMYGVPVVVAINRFETDTEAEIAIVREEAIAAGAEDAIPANH  642
             E L KG  NL+KHI+N K +GVPVVVAINRF TDT+AEI +VRE    AG  DA  + H
Sbjct  349  LEALEKGLANLEKHIENVKKFGVPVVVAINRFPTDTDAEIELVRELC-EAGGVDAALSEH  407

Query  643  WAEGGAGAVDLAKGVL-AASSKPKDFKLLYDLEGSIQERIERIGKAMYGAEKVEFSELAQ  701
            WA+GG GA++LA+ V+ A   +P +FK LYDLE SI+E+IE I K +YGA+ VE+S  A+
Sbjct  408  WAKGGEGAIELAEAVVEACEEEPSNFKFLYDLELSIEEKIETIAKEIYGADGVEYSPKAK  467

Query  702  KKVDTYTAQGFSNLPICIAKTQYSLSHDPALKGAPTGFTIPIRDVRLAVGGGYL  755
            KK+      GF  LP+C+AKTQYSLS DP LKGAPTGFT+P+RDVRL+ G G++
Sbjct  468  KKLKRIEELGFGKLPVCMAKTQYSLSDDPKLKGAPTGFTLPVRDVRLSAGAGFI  521


>CDD:427036 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogenase/cyclohydrolase, 
NAD(P)-binding domain.  
Length=160

 Score = 242 bits (620),  Expect = 1e-76, Method: Composition-based stats.
 Identities = 89/143 (62%), Positives = 105/143 (73%), Gaps = 6/143 (4%)

Query  1    MDLLKASGVNPAGKEAVVLGRSDIVGSPVSYLLKNADATVTVCHSKTPDIPRIVKNADIV  60
            M+LLK  G++ AGK  VV+GRS+IVG P++ LL NA+ATVTVCHSKT D+  I + ADIV
Sbjct  24   MELLKRYGIDLAGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSKTKDLAEITREADIV  83

Query  61   VAAIGKAEFVKGDWLKPGAVVIDVGINYKPDPSKKSGQRLVGDVDFEAAVEVASQITPVP  120
            V A+GK E +K DW+KPGAVVIDVGIN           +LVGDVDFE   E AS ITPVP
Sbjct  84   VVAVGKPELIKADWIKPGAVVIDVGINR------VGNGKLVGDVDFENVKEKASAITPVP  137

Query  121  GGVGPMTVAMLLKNVVTSAKAYF  143
            GGVGPMTVAMLL+N V +AK   
Sbjct  138  GGVGPMTVAMLLQNTVEAAKRQL  160



Lambda      K        H        a         alpha
   0.317    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 961855472


Query= TCONS_00022105

Length=179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrog...  147     2e-44


>CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase. 
 
Length=346

 Score = 147 bits (374),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 77/173 (45%), Gaps = 22/173 (13%)

Query  8    PLYMSTKNTILKKYDGRFKDIFQEIYESTYKKEFDAKGIWYEHRLIDDMVAQMIKSEGGF  67
             +    K  +LK  D  ++ I  E+ ++ Y        +  EH+L+D+   Q++K+   F
Sbjct  179  KVTSVDKANVLKSSD-LWRKIVTEVAKAEYP------DVELEHQLVDNAAMQLVKNPSQF  231

Query  68   -VMALKNYDGDVQSDVVAQGFGSLGLMTSTLTTPDGSAFESEAAHGTVTRHYREHQKGRE  126
             V+   N  GD+ SD  +   GSLGL+ S     +G     E  HG+      +      
Sbjct  232  DVIVTPNLFGDILSDEASMLTGSLGLLPSASLGANGFG-IFEPVHGSAPDIAGKGI----  286

Query  127  TSTNPIASIFAWTRGLIQRGKLDETPDVVTFAEELERACIDVVNEEGIMTKDL  179
               NPIA+I +    L     L++       A+++E A + V+ E GI T DL
Sbjct  287  --ANPIATILSAAMMLRYSLGLEDA------ADKIEAAVLKVL-ESGIRTGDL  330



Lambda      K        H        a         alpha
   0.317    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00022104

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrog...  239     2e-77


>CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase. 
 
Length=346

 Score = 239 bits (613),  Expect = 2e-77, Method: Composition-based stats.
 Identities = 84/364 (23%), Positives = 139/364 (38%), Gaps = 53/364 (15%)

Query  1    MTRIIWQEIREKLILPYLDIDLKYYDLGIEYRDQTDDKVTVEAAEAIKKYGVGVKCATIT  60
            +     + ++  L    L+ + +  D+G    D+T + +  E  EA KK    +  A   
Sbjct  14   VMAAALKVLKAALEKAPLEFEFEERDVGGAAIDETGEPLPDETLEACKKADAVLLGAVGG  73

Query  61   PD----EARVEEFKLKKMWLSPNGTIRNILGGTVFREPIVIPRIPRLVPGWNKPIIIGRH  116
            P       R E   L  +     G   N+    VF  P+      +        I+I R 
Sbjct  74   PKWDPAGVRPENG-LLALRKEL-GLFANLRPAKVFP-PLGDASPLKNEVEG-VDIVIVRE  129

Query  117  AFGDQYRATDIVVPGPGKLELVYTPENGEPQAIKVYDFTGGGVAQTQYNTDDSIRGFAHS  176
              G  Y   +  + G G         N      K+Y             + D I   A  
Sbjct  130  LTGGIYFGIEKGIKGSG---------NEVAVDTKLY-------------SRDEIERIARV  167

Query  177  SFKMALMKG-LPLYMSTKNTILKKYDGRFKDIFQEIYESTYKKEFDAKGIWYEHRLIDDM  235
            +F++A  +G   +    K  +LK  D  ++ I  E+ ++ Y        +  EH+L+D+ 
Sbjct  168  AFELARKRGRKKVTSVDKANVLKSSD-LWRKIVTEVAKAEY------PDVELEHQLVDNA  220

Query  236  VAQMIKSEGGF-VMALKNYDGDVQSDVVAQGFGSLGLMTSTLTTPDGSAFESEAAHGTVT  294
              Q++K+   F V+   N  GD+ SD  +   GSLGL+ S     +G     E  HG+  
Sbjct  221  AMQLVKNPSQFDVIVTPNLFGDILSDEASMLTGSLGLLPSASLGANGFG-IFEPVHGSAP  279

Query  295  RHYREHQKGRETSTNPIASIFAWTRGLIQRGKLDETPDVVTFAEELERACIDVVNEEGIM  354
                +         NPIA+I +    L     L++       A+++E A + V+ E GI 
Sbjct  280  DIAGKGI------ANPIATILSAAMMLRYSLGLEDA------ADKIEAAVLKVL-ESGIR  326

Query  355  TKDL  358
            T DL
Sbjct  327  TGDL  330



Lambda      K        H        a         alpha
   0.318    0.138    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00026928

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.117    0.308    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00022106

Length=90
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrog...  62.7    9e-14


>CDD:425507 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase. 
 
Length=346

 Score = 62.7 bits (153),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (47%), Gaps = 7/60 (12%)

Query  8    PLYMSTKNTILKKYDGRFKDIFQEIYESTYKKEFDAKGIWYEHRLIDDMVAQMIKSEGGF  67
             +    K  +LK  D  ++ I  E+ ++ Y        +  EH+L+D+   Q++K+   F
Sbjct  179  KVTSVDKANVLKSSD-LWRKIVTEVAKAEYP------DVELEHQLVDNAAMQLVKNPSQF  231



Lambda      K        H        a         alpha
   0.324    0.139    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00022108

Length=367


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00022107

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00022110

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family ...  103     2e-26


>CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28.  Glycosyl 
hydrolase family 28 includes polygalacturonase EC:3.2.1.15 
as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. 
These enzymes are important in cell wall metabolism.
Length=319

 Score = 103 bits (258),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 68/222 (31%), Positives = 110/222 (50%), Gaps = 27/222 (12%)

Query  27   GDDITVSHAIVDATSTGGFPFNTDGFDV-EGTNISITDSVMFNGDDAIAVNTPSHNIVFA  85
            G D+T+S   +D ++      NTDGFDV   + ++I+++ ++N DD IA+N+ S NI   
Sbjct  114  GTDLTISDITIDNSAGDSNGHNTDGFDVGSSSGVTISNTNIYNQDDCIAINSGS-NISIT  172

Query  86   RNTIGYQSHGMSIGSLGKDPTDFANITNLRFEDVTVIDALYAARFKSWSGGRGLVKNVVW  145
              T G   HG+SIGS+G        + N+  +D TV+++    R K+ SG  G V N+ +
Sbjct  173  NVTCG-GGHGISIGSVGG--RSDNTVKNVTVKDSTVVNSDNGVRIKTISGATGTVSNITY  229

Query  146  KNIRTFNVT-FPIFVTQSYSDQSASRSGTIDPFSSVMMEDFTWSDFSGTINTYHP-----  199
            +NI   N++ + I + Q Y +       T  P S V + D T+ + +GT+ +        
Sbjct  230  ENIVLSNISKYGIVIDQDYENG----EPTGKPTSGVKISDITFKNVTGTVASSATAVYLL  285

Query  200  -GDGSCVTDPCWYNVGLPNLKHTEAIVLECNTESSCKNFRTE  240
             GDGSC +   W  V +   K          + S CKN  + 
Sbjct  286  CGDGSC-SGWTWSGVNITGGK----------STSKCKNVPSG  316



Lambda      K        H        a         alpha
   0.318    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00026930

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family ...  103     2e-26


>CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28.  Glycosyl 
hydrolase family 28 includes polygalacturonase EC:3.2.1.15 
as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. 
These enzymes are important in cell wall metabolism.
Length=319

 Score = 103 bits (258),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 68/222 (31%), Positives = 110/222 (50%), Gaps = 27/222 (12%)

Query  27   GDDITVSHAIVDATSTGGFPFNTDGFDV-EGTNISITDSVMFNGDDAIAVNTPSHNIVFA  85
            G D+T+S   +D ++      NTDGFDV   + ++I+++ ++N DD IA+N+ S NI   
Sbjct  114  GTDLTISDITIDNSAGDSNGHNTDGFDVGSSSGVTISNTNIYNQDDCIAINSGS-NISIT  172

Query  86   RNTIGYQSHGMSIGSLGKDPTDFANITNLRFEDVTVIDALYAARFKSWSGGRGLVKNVVW  145
              T G   HG+SIGS+G        + N+  +D TV+++    R K+ SG  G V N+ +
Sbjct  173  NVTCG-GGHGISIGSVGG--RSDNTVKNVTVKDSTVVNSDNGVRIKTISGATGTVSNITY  229

Query  146  KNIRTFNVT-FPIFVTQSYSDQSASRSGTIDPFSSVMMEDFTWSDFSGTINTYHP-----  199
            +NI   N++ + I + Q Y +       T  P S V + D T+ + +GT+ +        
Sbjct  230  ENIVLSNISKYGIVIDQDYENG----EPTGKPTSGVKISDITFKNVTGTVASSATAVYLL  285

Query  200  -GDGSCVTDPCWYNVGLPNLKHTEAIVLECNTESSCKNFRTE  240
             GDGSC +   W  V +   K          + S CKN  + 
Sbjct  286  CGDGSC-SGWTWSGVNITGGK----------STSKCKNVPSG  316



Lambda      K        H        a         alpha
   0.318    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00022109

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family ...  103     2e-26


>CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28.  Glycosyl 
hydrolase family 28 includes polygalacturonase EC:3.2.1.15 
as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. 
These enzymes are important in cell wall metabolism.
Length=319

 Score = 103 bits (258),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 68/222 (31%), Positives = 110/222 (50%), Gaps = 27/222 (12%)

Query  27   GDDITVSHAIVDATSTGGFPFNTDGFDV-EGTNISITDSVMFNGDDAIAVNTPSHNIVFA  85
            G D+T+S   +D ++      NTDGFDV   + ++I+++ ++N DD IA+N+ S NI   
Sbjct  114  GTDLTISDITIDNSAGDSNGHNTDGFDVGSSSGVTISNTNIYNQDDCIAINSGS-NISIT  172

Query  86   RNTIGYQSHGMSIGSLGKDPTDFANITNLRFEDVTVIDALYAARFKSWSGGRGLVKNVVW  145
              T G   HG+SIGS+G        + N+  +D TV+++    R K+ SG  G V N+ +
Sbjct  173  NVTCG-GGHGISIGSVGG--RSDNTVKNVTVKDSTVVNSDNGVRIKTISGATGTVSNITY  229

Query  146  KNIRTFNVT-FPIFVTQSYSDQSASRSGTIDPFSSVMMEDFTWSDFSGTINTYHP-----  199
            +NI   N++ + I + Q Y +       T  P S V + D T+ + +GT+ +        
Sbjct  230  ENIVLSNISKYGIVIDQDYENG----EPTGKPTSGVKISDITFKNVTGTVASSATAVYLL  285

Query  200  -GDGSCVTDPCWYNVGLPNLKHTEAIVLECNTESSCKNFRTE  240
             GDGSC +   W  V +   K          + S CKN  + 
Sbjct  286  CGDGSC-SGWTWSGVNITGGK----------STSKCKNVPSG  316



Lambda      K        H        a         alpha
   0.318    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00022112

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family ...  103     2e-26


>CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28.  Glycosyl 
hydrolase family 28 includes polygalacturonase EC:3.2.1.15 
as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. 
These enzymes are important in cell wall metabolism.
Length=319

 Score = 103 bits (258),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 68/222 (31%), Positives = 110/222 (50%), Gaps = 27/222 (12%)

Query  27   GDDITVSHAIVDATSTGGFPFNTDGFDV-EGTNISITDSVMFNGDDAIAVNTPSHNIVFA  85
            G D+T+S   +D ++      NTDGFDV   + ++I+++ ++N DD IA+N+ S NI   
Sbjct  114  GTDLTISDITIDNSAGDSNGHNTDGFDVGSSSGVTISNTNIYNQDDCIAINSGS-NISIT  172

Query  86   RNTIGYQSHGMSIGSLGKDPTDFANITNLRFEDVTVIDALYAARFKSWSGGRGLVKNVVW  145
              T G   HG+SIGS+G        + N+  +D TV+++    R K+ SG  G V N+ +
Sbjct  173  NVTCG-GGHGISIGSVGG--RSDNTVKNVTVKDSTVVNSDNGVRIKTISGATGTVSNITY  229

Query  146  KNIRTFNVT-FPIFVTQSYSDQSASRSGTIDPFSSVMMEDFTWSDFSGTINTYHP-----  199
            +NI   N++ + I + Q Y +       T  P S V + D T+ + +GT+ +        
Sbjct  230  ENIVLSNISKYGIVIDQDYENG----EPTGKPTSGVKISDITFKNVTGTVASSATAVYLL  285

Query  200  -GDGSCVTDPCWYNVGLPNLKHTEAIVLECNTESSCKNFRTE  240
             GDGSC +   W  V +   K          + S CKN  + 
Sbjct  286  CGDGSC-SGWTWSGVNITGGK----------STSKCKNVPSG  316



Lambda      K        H        a         alpha
   0.318    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00022111

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family ...  103     2e-26


>CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28.  Glycosyl 
hydrolase family 28 includes polygalacturonase EC:3.2.1.15 
as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. 
These enzymes are important in cell wall metabolism.
Length=319

 Score = 103 bits (258),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 68/222 (31%), Positives = 110/222 (50%), Gaps = 27/222 (12%)

Query  27   GDDITVSHAIVDATSTGGFPFNTDGFDV-EGTNISITDSVMFNGDDAIAVNTPSHNIVFA  85
            G D+T+S   +D ++      NTDGFDV   + ++I+++ ++N DD IA+N+ S NI   
Sbjct  114  GTDLTISDITIDNSAGDSNGHNTDGFDVGSSSGVTISNTNIYNQDDCIAINSGS-NISIT  172

Query  86   RNTIGYQSHGMSIGSLGKDPTDFANITNLRFEDVTVIDALYAARFKSWSGGRGLVKNVVW  145
              T G   HG+SIGS+G        + N+  +D TV+++    R K+ SG  G V N+ +
Sbjct  173  NVTCG-GGHGISIGSVGG--RSDNTVKNVTVKDSTVVNSDNGVRIKTISGATGTVSNITY  229

Query  146  KNIRTFNVT-FPIFVTQSYSDQSASRSGTIDPFSSVMMEDFTWSDFSGTINTYHP-----  199
            +NI   N++ + I + Q Y +       T  P S V + D T+ + +GT+ +        
Sbjct  230  ENIVLSNISKYGIVIDQDYENG----EPTGKPTSGVKISDITFKNVTGTVASSATAVYLL  285

Query  200  -GDGSCVTDPCWYNVGLPNLKHTEAIVLECNTESSCKNFRTE  240
             GDGSC +   W  V +   K          + S CKN  + 
Sbjct  286  CGDGSC-SGWTWSGVNITGGK----------STSKCKNVPSG  316



Lambda      K        H        a         alpha
   0.318    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00022113

Length=367


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00026931

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family ...  103     2e-26


>CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28.  Glycosyl 
hydrolase family 28 includes polygalacturonase EC:3.2.1.15 
as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. 
These enzymes are important in cell wall metabolism.
Length=319

 Score = 103 bits (258),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 68/222 (31%), Positives = 110/222 (50%), Gaps = 27/222 (12%)

Query  27   GDDITVSHAIVDATSTGGFPFNTDGFDV-EGTNISITDSVMFNGDDAIAVNTPSHNIVFA  85
            G D+T+S   +D ++      NTDGFDV   + ++I+++ ++N DD IA+N+ S NI   
Sbjct  114  GTDLTISDITIDNSAGDSNGHNTDGFDVGSSSGVTISNTNIYNQDDCIAINSGS-NISIT  172

Query  86   RNTIGYQSHGMSIGSLGKDPTDFANITNLRFEDVTVIDALYAARFKSWSGGRGLVKNVVW  145
              T G   HG+SIGS+G        + N+  +D TV+++    R K+ SG  G V N+ +
Sbjct  173  NVTCG-GGHGISIGSVGG--RSDNTVKNVTVKDSTVVNSDNGVRIKTISGATGTVSNITY  229

Query  146  KNIRTFNVT-FPIFVTQSYSDQSASRSGTIDPFSSVMMEDFTWSDFSGTINTYHP-----  199
            +NI   N++ + I + Q Y +       T  P S V + D T+ + +GT+ +        
Sbjct  230  ENIVLSNISKYGIVIDQDYENG----EPTGKPTSGVKISDITFKNVTGTVASSATAVYLL  285

Query  200  -GDGSCVTDPCWYNVGLPNLKHTEAIVLECNTESSCKNFRTE  240
             GDGSC +   W  V +   K          + S CKN  + 
Sbjct  286  CGDGSC-SGWTWSGVNITGGK----------STSKCKNVPSG  316



Lambda      K        H        a         alpha
   0.318    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00022114

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00022115

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00022116

Length=212


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00022117

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00022118

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00022119

Length=413


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00022120

Length=276


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00026933

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429519 pfam07534, TLD, TLD. This domain is predicted to be an...  99.2    8e-26


>CDD:429519 pfam07534, TLD, TLD.  This domain is predicted to be an enzyme 
and is often found associated with pfam01476. It's structure 
consists of a beta-sandwich surrounded by two helices and 
two one-turn helices.
Length=139

 Score = 99.2 bits (248),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 80/223 (36%), Gaps = 86/223 (39%)

Query  150  LAYSLDRDGASLSTLYEHCRDFSHRSPRAGYVLIVRDSSPAGAVFGAYMTDPPHPDSH-Y  208
            L YS  RDG+S  T  E   +      +   +LI++D+   G +FGA+ + P       +
Sbjct  1    LLYSTSRDGSSYQTFLEKIDN------KGPTLLIIKDN--DGYIFGAFASQPWKVSGKKF  52

Query  209  FGTGECFLWRASVLPSPSNLLNINGPQSEEMLERAGLPLPPSADTTHAGRSTTLRGDSRG  268
            +G GE FL+  S+ P                                             
Sbjct  53   YGDGESFLF--SLSP---------------------------------------------  65

Query  269  HGDGRLAAPRANGGTGAGAASGASTPERIRFKAFPYSGVNDYMMFCETGFLSLGGGDGHY  328
                                         +F  + ++G N+    C +  L  GGG   +
Sbjct  66   -----------------------------QFDPYKWTGKNNAYFNCTSDGLGFGGGQPKF  96

Query  329  GLWVDSSLEKGVSASCQTFGNEPLSDEG-VKFDVLGVEVWYVG  370
             LW+DS LE G S  C+TFGN  LS  G  +F +  VEVW +G
Sbjct  97   DLWIDSDLEFGYSRHCETFGNGQLSGSGQERFKIDDVEVWGLG  139



Lambda      K        H        a         alpha
   0.314    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00026934

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429519 pfam07534, TLD, TLD. This domain is predicted to be an...  99.2    8e-26


>CDD:429519 pfam07534, TLD, TLD.  This domain is predicted to be an enzyme 
and is often found associated with pfam01476. It's structure 
consists of a beta-sandwich surrounded by two helices and 
two one-turn helices.
Length=139

 Score = 99.2 bits (248),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 80/223 (36%), Gaps = 86/223 (39%)

Query  150  LAYSLDRDGASLSTLYEHCRDFSHRSPRAGYVLIVRDSSPAGAVFGAYMTDPPHPDSH-Y  208
            L YS  RDG+S  T  E   +      +   +LI++D+   G +FGA+ + P       +
Sbjct  1    LLYSTSRDGSSYQTFLEKIDN------KGPTLLIIKDN--DGYIFGAFASQPWKVSGKKF  52

Query  209  FGTGECFLWRASVLPSPSNLLNINGPQSEEMLERAGLPLPPSADTTHAGRSTTLRGDSRG  268
            +G GE FL+  S+ P                                             
Sbjct  53   YGDGESFLF--SLSP---------------------------------------------  65

Query  269  HGDGRLAAPRANGGTGAGAASGASTPERIRFKAFPYSGVNDYMMFCETGFLSLGGGDGHY  328
                                         +F  + ++G N+    C +  L  GGG   +
Sbjct  66   -----------------------------QFDPYKWTGKNNAYFNCTSDGLGFGGGQPKF  96

Query  329  GLWVDSSLEKGVSASCQTFGNEPLSDEG-VKFDVLGVEVWYVG  370
             LW+DS LE G S  C+TFGN  LS  G  +F +  VEVW +G
Sbjct  97   DLWIDSDLEFGYSRHCETFGNGQLSGSGQERFKIDDVEVWGLG  139



Lambda      K        H        a         alpha
   0.314    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00022123

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429519 pfam07534, TLD, TLD. This domain is predicted to be an...  99.2    8e-26


>CDD:429519 pfam07534, TLD, TLD.  This domain is predicted to be an enzyme 
and is often found associated with pfam01476. It's structure 
consists of a beta-sandwich surrounded by two helices and 
two one-turn helices.
Length=139

 Score = 99.2 bits (248),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 80/223 (36%), Gaps = 86/223 (39%)

Query  150  LAYSLDRDGASLSTLYEHCRDFSHRSPRAGYVLIVRDSSPAGAVFGAYMTDPPHPDSH-Y  208
            L YS  RDG+S  T  E   +      +   +LI++D+   G +FGA+ + P       +
Sbjct  1    LLYSTSRDGSSYQTFLEKIDN------KGPTLLIIKDN--DGYIFGAFASQPWKVSGKKF  52

Query  209  FGTGECFLWRASVLPSPSNLLNINGPQSEEMLERAGLPLPPSADTTHAGRSTTLRGDSRG  268
            +G GE FL+  S+ P                                             
Sbjct  53   YGDGESFLF--SLSP---------------------------------------------  65

Query  269  HGDGRLAAPRANGGTGAGAASGASTPERIRFKAFPYSGVNDYMMFCETGFLSLGGGDGHY  328
                                         +F  + ++G N+    C +  L  GGG   +
Sbjct  66   -----------------------------QFDPYKWTGKNNAYFNCTSDGLGFGGGQPKF  96

Query  329  GLWVDSSLEKGVSASCQTFGNEPLSDEG-VKFDVLGVEVWYVG  370
             LW+DS LE G S  C+TFGN  LS  G  +F +  VEVW +G
Sbjct  97   DLWIDSDLEFGYSRHCETFGNGQLSGSGQERFKIDDVEVWGLG  139



Lambda      K        H        a         alpha
   0.314    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00022122

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin proteas...  72.8    4e-16


>CDD:396120 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease.  Members 
of this family are found in proteasome regulatory subunits, 
eukaryotic initiation factor 3 (eIF3) subunits and regulators 
of transcription factors. This family is also known as 
the MPN domain and PAD-1-like domain, JABP1 domain or JAMM 
domain. These are metalloenzymes that function as the ubiquitin 
isopeptidase/ deubiquitinase in the ubiquitin-based signalling 
and protein turnover pathways in eukaryotes. Versions 
of the domain in prokaryotic cognates of the ubiquitin-modification 
pathway are shown to have a similar role, and the 
archael protein from Haloferax volcanii is found to cleave ubiquitin-like 
small archaeal modifier proteins (SAMP1/2) from 
protein conjugates.
Length=117

 Score = 72.8 bits (179),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 34/118 (29%), Positives = 52/118 (44%), Gaps = 9/118 (8%)

Query  357  TPLRTVWLPPDLRTHFLAIAGPNTRRNLETCGILCGTLISNA-LFVSRLLIPEQTATSDT  415
            + +RTV + P +    L  A    +   E  G+L G L  +  + ++      Q  T D 
Sbjct  1    SSVRTVIIHPLVLLKILDHANRGGKIGEEVMGVLLGKLEGDGTIEITNSFALPQEETEDD  60

Query  416  CETVNESAIF-----DYCD--SEDLMVLGWIHTHPTQTCFMSSRDLHTHCGYQVMLPE  466
               V     +     +     +    V+GW HTHP   C++SS D+HTH  YQ M+PE
Sbjct  61   VNAVALDQEYMENMHEMLKKVNRKEEVVGWYHTHPGL-CWLSSVDVHTHALYQRMIPE  117



Lambda      K        H        a         alpha
   0.315    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00026935

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429519 pfam07534, TLD, TLD. This domain is predicted to be an...  58.0    4e-11


>CDD:429519 pfam07534, TLD, TLD.  This domain is predicted to be an enzyme 
and is often found associated with pfam01476. It's structure 
consists of a beta-sandwich surrounded by two helices and 
two one-turn helices.
Length=139

 Score = 58.0 bits (141),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 22/69 (32%), Positives = 35/69 (51%), Gaps = 9/69 (13%)

Query  150  LAYSLDRDGASLSTLYEHCRDFSHRSPRAGYVLIVRDSSPAGAVFGAYMTDPPHPDSH-Y  208
            L YS  RDG+S  T  E   +      +   +LI++D+   G +FGA+ + P       +
Sbjct  1    LLYSTSRDGSSYQTFLEKIDN------KGPTLLIIKDN--DGYIFGAFASQPWKVSGKKF  52

Query  209  FGTGECFLW  217
            +G GE FL+
Sbjct  53   YGDGESFLF  61



Lambda      K        H        a         alpha
   0.314    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0712    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00022124

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429519 pfam07534, TLD, TLD. This domain is predicted to be an...  99.2    8e-26


>CDD:429519 pfam07534, TLD, TLD.  This domain is predicted to be an enzyme 
and is often found associated with pfam01476. It's structure 
consists of a beta-sandwich surrounded by two helices and 
two one-turn helices.
Length=139

 Score = 99.2 bits (248),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 80/223 (36%), Gaps = 86/223 (39%)

Query  150  LAYSLDRDGASLSTLYEHCRDFSHRSPRAGYVLIVRDSSPAGAVFGAYMTDPPHPDSH-Y  208
            L YS  RDG+S  T  E   +      +   +LI++D+   G +FGA+ + P       +
Sbjct  1    LLYSTSRDGSSYQTFLEKIDN------KGPTLLIIKDN--DGYIFGAFASQPWKVSGKKF  52

Query  209  FGTGECFLWRASVLPSPSNLLNINGPQSEEMLERAGLPLPPSADTTHAGRSTTLRGDSRG  268
            +G GE FL+  S+ P                                             
Sbjct  53   YGDGESFLF--SLSP---------------------------------------------  65

Query  269  HGDGRLAAPRANGGTGAGAASGASTPERIRFKAFPYSGVNDYMMFCETGFLSLGGGDGHY  328
                                         +F  + ++G N+    C +  L  GGG   +
Sbjct  66   -----------------------------QFDPYKWTGKNNAYFNCTSDGLGFGGGQPKF  96

Query  329  GLWVDSSLEKGVSASCQTFGNEPLSDEG-VKFDVLGVEVWYVG  370
             LW+DS LE G S  C+TFGN  LS  G  +F +  VEVW +G
Sbjct  97   DLWIDSDLEFGYSRHCETFGNGQLSGSGQERFKIDDVEVWGLG  139



Lambda      K        H        a         alpha
   0.314    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00022126

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396350 pfam01746, tRNA_m1G_MT, tRNA (Guanine-1)-methyltransfe...  115     3e-31


>CDD:396350 pfam01746, tRNA_m1G_MT, tRNA (Guanine-1)-methyltransferase.  
This is a family of tRNA (Guanine-1)-methyltransferases EC:2.1.1.31. 
In E.coli K12 this enzyme catalyzes the conversion 
of a guanosine residue to N1-methylguanine in position 37, next 
to the anticodon, in tRNA.
Length=182

 Score = 115 bits (290),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 52/209 (25%), Positives = 79/209 (38%), Gaps = 42/209 (20%)

Query  161  DLMLDKERVSLGAQITRSYSDNSRAPFRSHLVVSSFNKLLKERFDTVLGKT--HENWK--  216
             L  +K  VSL  Q  R Y+ N R           F  +LK   +    ++  +E WK  
Sbjct  1    GLAQEKGLVSLVVQNLRDYTANRRNTVDDEPYGGGFGMVLKPEPEFEALESVNYEKWKVI  60

Query  217  -----GVRFLQEDFAEAAEMAKEWMQGPKGGQLAGVFADKADAKPEDGEIVYLSSDSPNI  271
                 G  F QE   + ++  KE                          +VYL  D   +
Sbjct  61   LLTPTGKPFFQEGAVDLSQ--KEH-------------------------LVYLCGDYEGV  93

Query  272  LTELKPYSTYIIGGLVDKNRHKG----ICYKSAVAKGIKTAKLPIGEYIQM--AHRQVLA  325
               +     Y IG  VDK   KG    I     +  G+ TA LPI  ++     + + L 
Sbjct  94   DERVDDDKEYSIGDFVDKGGEKGALVLIDLVKRLLPGVLTASLPIDSFLLEKPHYTRPLT  153

Query  326  TNHVVEIMIRWLELGDWGKAFIQVIPQRK  354
             N V EI++    + +W +A ++ IP+RK
Sbjct  154  LNQVPEILLSGNHIRNWKEALLRTIPRRK  182



Lambda      K        H        a         alpha
   0.311    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00022127

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461852 pfam06212, GRIM-19, GRIM-19 protein. This family consi...  81.9    1e-21


>CDD:461852 pfam06212, GRIM-19, GRIM-19 protein.  This family consists of 
several eukaryotic gene associated with retinoic-interferon-induced 
mortality 19 (GRIM-19) proteins. GRIM-19, was reported 
to encode a small protein primarily distributed in the nucleus 
and was able to promote cell death induced by IFN-beta 
and RA. A bovine homolog of GRIM-19 was co-purified with mitochondrial 
NADH:ubiquinone oxidoreductase (complex I) in bovine 
heart. Therefore, its exact cellular localization and 
function are unclear. It has now been discovered that GRIM-19 
is a specific interacting protein which negatively regulates 
Stat3 activity.
Length=132

 Score = 81.9 bits (203),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 45/120 (38%), Positives = 63/120 (53%), Gaps = 13/120 (11%)

Query  3    QDMPPSGGYAPVQYKRNLPARGFRPIYYLVGMHLFMAYGYYKLFYGIREQHELAREKVWS  62
            QDMPP GGY P+ Y RN P  G      L G     A G+Y  + G +E+  L  E   +
Sbjct  4    QDMPPPGGYGPINYARNPPKTGLSGYAMLAGGIGVTAVGFYLYYKGNKERRRLRIEMRSA  63

Query  63   RLHLVPLLQAEEDRDQVRRHFADKAREKELL--------GTES--KVYNS---DRYVEPM  109
            RL ++PLLQAE DR  +++   ++  E EL+        GT     VY++   DR+V+PM
Sbjct  64   RLAILPLLQAERDRRYLKQLRKNRDEEAELMKDVPGWEVGTWYGEPVYHTLPKDRWVDPM  123



Lambda      K        H        a         alpha
   0.325    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00022128

Length=266


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00022131

Length=457


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 562869368


Query= TCONS_00022130

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462527 pfam08585, RMI1_N, RecQ mediated genome instability pr...  225     2e-75


>CDD:462527 pfam08585, RMI1_N, RecQ mediated genome instability protein. 
 RMI1_N is an N-terminal family of eukaryotic proteins. The 
domain probably carries an oligo-nucleotide-binding domain or 
OB-fold, and forms a stable complex with Bloom syndrome protein 
BLM and DNA topoisomerase 3-alpha.
Length=194

 Score = 225 bits (576),  Expect = 2e-75, Method: Composition-based stats.
 Identities = 89/222 (40%), Positives = 122/222 (55%), Gaps = 29/222 (13%)

Query  12   LLNSKSLPVSQSWLNNFISSSTVSQRNVPLSVIIRTALFRILASDFRESLSRRTPSSLLP  71
            L + K +PVS  WL   +S     + N+PLS + +T L ++LASD RES     PS +LP
Sbjct  1    LASRKHIPVSPEWLEACVSFL---RPNLPLSALAKTVLEQLLASDLRES---TNPSPVLP  54

Query  72   VDIFDTSLQESCLQGPIPLQIVDIEDIGTSLWSQVETIERIERGEAIRGREIVRTVNVDE  131
             +I         L GP+ +Q++DIEDIG S +SQ+E +E  ERGE  RGR         E
Sbjct  55   ANIASQHPIR--LPGPVVVQVLDIEDIGQSAYSQLEALEARERGEQTRGR---------E  103

Query  132  DSEERAARAGNDRNANSTVSGVGSASNGPHRLILQDAAGTRAVAFELKRVEGIGLGKIPI  191
              EE+ A   N                   +L+L D  G +  A E K + G+ L K+P 
Sbjct  104  VDEEKKADNSNQWEPK---------PRRMLKLVLTD-GGQKVYAIEYKPIPGLSL-KLPP  152

Query  192  GAKLLLH-DATVARGMILLTPECVTLLGGKIETLDQAWKEGR  232
            G KLLL  +  V RG++LLTPE V +LGG++E LD+AW+EGR
Sbjct  153  GTKLLLKGNVVVRRGVLLLTPENVKVLGGEVEELDKAWREGR  194



Lambda      K        H        a         alpha
   0.316    0.132    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00026936

Length=238


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00022132

Length=486


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00022129

Length=1006
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436771 pfam18833, TPR_22, Tetratricopeptide repeat. This Pfam...  80.7    6e-19


>CDD:436771 pfam18833, TPR_22, Tetratricopeptide repeat.  This Pfam entry 
includes outlying Tetratricopeptide-like repeats (two repeat 
units) that are not matched by pfam00515.
Length=92

 Score = 80.7 bits (200),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 42/66 (64%), Gaps = 6/66 (9%)

Query  3   ESEEKEFINREIGERRTRLGARIDHVTMEVKREA-----FKRGELEQLYRGIVDWTHDDQ  57
           E EEK+ I++ I + R +LGA +  V  EVK  +     +K  ELE+LY  +++WT DD+
Sbjct  28  EKEEKKEISKLISKERLKLGANLTQVQ-EVKLNSIAWSVYKDSELEELYEQLINWTDDDE  86

Query  58  VRRTYE  63
           +RR YE
Sbjct  87  LRRKYE  92



Lambda      K        H        a         alpha
   0.318    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1288447160


Query= TCONS_00022133

Length=1280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436771 pfam18833, TPR_22, Tetratricopeptide repeat. This Pfam...  81.4    4e-19


>CDD:436771 pfam18833, TPR_22, Tetratricopeptide repeat.  This Pfam entry 
includes outlying Tetratricopeptide-like repeats (two repeat 
units) that are not matched by pfam00515.
Length=92

 Score = 81.4 bits (202),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 42/66 (64%), Gaps = 6/66 (9%)

Query  3   ESEEKEFINREIGERRTRLGARIDHVTMEVKREA-----FKRGELEQLYRGIVDWTHDDQ  57
           E EEK+ I++ I + R +LGA +  V  EVK  +     +K  ELE+LY  +++WT DD+
Sbjct  28  EKEEKKEISKLISKERLKLGANLTQVQ-EVKLNSIAWSVYKDSELEELYEQLINWTDDDE  86

Query  58  VRRTYE  63
           +RR YE
Sbjct  87  LRRKYE  92



Lambda      K        H        a         alpha
   0.318    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1627141200


Query= TCONS_00022134

Length=650
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436581 pfam18564, Glyco_hydro_5_C, Glycoside hydrolase family...  99.6    7e-26


>CDD:436581 pfam18564, Glyco_hydro_5_C, Glycoside hydrolase family 5 C-terminal 
domain.  This is the C-terminal domain of endo-glycoceramidase 
II (EGC), a membrane-associated family 5 glycosidase 
pfam00150. The C-terminal domain assumes a beta-sandwich 
fold, which resembles that of many carbohydrate-binding modules.
Length=86

 Score = 99.6 bits (249),  Expect = 7e-26, Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 49/92 (53%), Gaps = 7/92 (8%)

Query  529  RPSPIITNGQILQYGFDLKSCVFSMRLLGEKKGLGQEAATEIFLPDFHFPDTHTVVAVSA  588
            RP P    G  L +GFDL++  F++       G G +A TEIFLP+FHFPD    V VS 
Sbjct  1    RPYPAAVAGTPLSFGFDLRTGTFTLEYTS-PSGAGADAPTEIFLPEFHFPD-GYEVEVSG  58

Query  589  GEWTIDYPEIHSVKFQRLRWWHPEGD-HNIKI  619
            G+W  D       +   LRWWH EG  H I +
Sbjct  59   GKWEYD----EGRQTLYLRWWHSEGGVHTITV  86



Lambda      K        H        a         alpha
   0.319    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 821458030


Query= TCONS_00022135

Length=759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436581 pfam18564, Glyco_hydro_5_C, Glycoside hydrolase family...  98.5    2e-25


>CDD:436581 pfam18564, Glyco_hydro_5_C, Glycoside hydrolase family 5 C-terminal 
domain.  This is the C-terminal domain of endo-glycoceramidase 
II (EGC), a membrane-associated family 5 glycosidase 
pfam00150. The C-terminal domain assumes a beta-sandwich 
fold, which resembles that of many carbohydrate-binding modules.
Length=86

 Score = 98.5 bits (246),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 49/92 (53%), Gaps = 7/92 (8%)

Query  638  RPSPIITNGQILQYGFDLKSCVFSMRLLGEKKGLGQEAATEIFLPDFHFPDTHTVVAVSA  697
            RP P    G  L +GFDL++  F++       G G +A TEIFLP+FHFPD    V VS 
Sbjct  1    RPYPAAVAGTPLSFGFDLRTGTFTLEYTS-PSGAGADAPTEIFLPEFHFPD-GYEVEVSG  58

Query  698  GEWTIDYPEIHSVKFQRLRWWHPEGD-HNIKI  728
            G+W  D       +   LRWWH EG  H I +
Sbjct  59   GKWEYD----EGRQTLYLRWWHSEGGVHTITV  86



Lambda      K        H        a         alpha
   0.319    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 967676080


Query= TCONS_00026937

Length=439


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00022136

Length=759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436581 pfam18564, Glyco_hydro_5_C, Glycoside hydrolase family...  98.5    2e-25


>CDD:436581 pfam18564, Glyco_hydro_5_C, Glycoside hydrolase family 5 C-terminal 
domain.  This is the C-terminal domain of endo-glycoceramidase 
II (EGC), a membrane-associated family 5 glycosidase 
pfam00150. The C-terminal domain assumes a beta-sandwich 
fold, which resembles that of many carbohydrate-binding modules.
Length=86

 Score = 98.5 bits (246),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 49/92 (53%), Gaps = 7/92 (8%)

Query  638  RPSPIITNGQILQYGFDLKSCVFSMRLLGEKKGLGQEAATEIFLPDFHFPDTHTVVAVSA  697
            RP P    G  L +GFDL++  F++       G G +A TEIFLP+FHFPD    V VS 
Sbjct  1    RPYPAAVAGTPLSFGFDLRTGTFTLEYTS-PSGAGADAPTEIFLPEFHFPD-GYEVEVSG  58

Query  698  GEWTIDYPEIHSVKFQRLRWWHPEGD-HNIKI  728
            G+W  D       +   LRWWH EG  H I +
Sbjct  59   GKWEYD----EGRQTLYLRWWHSEGGVHTITV  86



Lambda      K        H        a         alpha
   0.319    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 967676080


Query= TCONS_00022137

Length=759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436581 pfam18564, Glyco_hydro_5_C, Glycoside hydrolase family...  98.5    2e-25


>CDD:436581 pfam18564, Glyco_hydro_5_C, Glycoside hydrolase family 5 C-terminal 
domain.  This is the C-terminal domain of endo-glycoceramidase 
II (EGC), a membrane-associated family 5 glycosidase 
pfam00150. The C-terminal domain assumes a beta-sandwich 
fold, which resembles that of many carbohydrate-binding modules.
Length=86

 Score = 98.5 bits (246),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 49/92 (53%), Gaps = 7/92 (8%)

Query  638  RPSPIITNGQILQYGFDLKSCVFSMRLLGEKKGLGQEAATEIFLPDFHFPDTHTVVAVSA  697
            RP P    G  L +GFDL++  F++       G G +A TEIFLP+FHFPD    V VS 
Sbjct  1    RPYPAAVAGTPLSFGFDLRTGTFTLEYTS-PSGAGADAPTEIFLPEFHFPD-GYEVEVSG  58

Query  698  GEWTIDYPEIHSVKFQRLRWWHPEGD-HNIKI  728
            G+W  D       +   LRWWH EG  H I +
Sbjct  59   GKWEYD----EGRQTLYLRWWHSEGGVHTITV  86



Lambda      K        H        a         alpha
   0.319    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 967676080


Query= TCONS_00022138

Length=1167
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated regio...  561     0.0   
CDD:462050 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-ter...  361     6e-115


>CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated region.  This 
region is composed of WD40 repeats.
Length=439

 Score = 561 bits (1448),  Expect = 0.0, Method: Composition-based stats.
 Identities = 207/451 (46%), Positives = 281/451 (62%), Gaps = 32/451 (7%)

Query  304  EKHVKSYDFAKNLE---SPPMLSLRKLGSPWVPPRTLSYNPAERAILVTSPTDGGAYELI  360
            E  V+SY+             LSL++LGS  + P+TLS+NP  R +LV      G Y + 
Sbjct  1    ENEVRSYNIKGIENKDGELLSLSLKELGSVEIYPQTLSHNPNGRFVLVC---GDGEYIIY  57

Query  361  HLPRDATGAVEPTDVKRGQASSAVFVARNRFAVFSQANQQVDIKDLSNSTTKTIKLPSGT  420
                    A+   +   G+    V+V+RNRFAV  ++      K+   S TK+IKLP   
Sbjct  58   T-------ALAWRNKAYGKGLDFVWVSRNRFAVLEKSGTVKIFKNFKESVTKSIKLPYSV  110

Query  421  TDIYFGGTGALLFITPTS-VVLFDIQQKKQLAELAVSGVKYVVWSNDGLYAALLSKHNVT  479
              I+ GG G+LL +     +  +D +Q K +  + VS VKYV+WS+DG   ALLSK  V 
Sbjct  111  DKIFGGGPGSLLGVKSEGSLSFYDWEQGKLVRRIDVSPVKYVIWSDDGELVALLSKDTVY  170

Query  480  IVTKSLEQV--------SSLHE-TIRIKSAAWDDAGVLLYSTLNHVKYSLLNGDNGIIRT  530
            I+  +LE V          LHE + R+KS AWD   V +Y+T NH+KY L+NGD+GII+T
Sbjct  171  ILNYNLEAVEDGVEDAFEVLHEISERVKSGAWDG-DVFIYTTSNHLKY-LVNGDSGIIKT  228

Query  531  LDHTVYLVKVKGR--SVYCLDRNAKPRVLEIDPTEYRFKLALVKRNYDEMLQIIKTSSLV  588
            LD T+YL+   G+   VY LDR+      EIDP+E  FKLAL++++Y+E+L+II+ S+L+
Sbjct  229  LDKTLYLLGYLGKENRVYLLDRDGNVVSYEIDPSELEFKLALLRKDYEEVLRIIRASNLL  288

Query  589  -----GQSIISYLQKKGYPEIALQFVQDPQTRFELALECGNLEVAIEMARELDRPKLWSR  643
                 GQ II YL+KKGYPEIALQFVQDP TRF+LALE GNL+VA+E+A+ELD P  W R
Sbjct  289  PPKDEGQKIIRYLEKKGYPEIALQFVQDPDTRFDLALELGNLDVALEIAKELDDPAKWKR  348

Query  644  LGMEALAHGNHQTVEMTYQKQRNFDKLSFLYLSIGDSEKLARMAKIAEHRGDFTSRFQNA  703
            LG  AL+ GN +  E  YQK ++FDKL  LYLS G+ EKL ++AKIAE RGD+ S FQNA
Sbjct  349  LGDAALSQGNIKLAEEAYQKAKDFDKLLLLYLSTGNMEKLKKLAKIAEKRGDYNSAFQNA  408

Query  704  IYRGDVDDRIQMFKEVDLYPLAYLTAKSHGL  734
            +Y GDV+  + +  +    P AYL AK++G 
Sbjct  409  LYLGDVEKCVDILIKTGRLPEAYLFAKTYGP  439


>CDD:462050 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus. 
 This family represents the C-terminus (approximately 500 residues) 
of the eukaryotic coatomer alpha subunit. Coatomer (COPI) 
is a large cytosolic protein complex which forms a coat 
around vesicles budding from the Golgi apparatus. Such coatomer-coated 
vesicles have been proposed to play a role in many 
distinct steps of intracellular transport. Note that many 
family members also contain the pfam04053 domain.
Length=402

 Score = 361 bits (928),  Expect = 6e-115, Method: Composition-based stats.
 Identities = 146/404 (36%), Positives = 210/404 (52%), Gaps = 30/404 (7%)

Query  785   FEKALLGEVG------VEDEDAAAL-------------GLEPEEEGEEAVLARETLEDEE  825
             FE AL    G       ED+D AA                   E+ ++     E   D++
Sbjct  3     FEGALAAAGGGSAAAVDEDDDEAAGAGWGDDADLDLDEANGGIEDEDDDEEEGEDGGDDD  62

Query  826   EDVAGWDMGEEINMEEDVDFVNVDSAEAGA-------GSSEADLWARNSPLAADHVAAGS  878
             E+  GWD+ E++ +  ++D      A           G   + +W  NS LA DH AAGS
Sbjct  63    EE-GGWDV-EDLELPPELDVGAAAGAARSGYFVAPTPGVPPSQIWTNNSQLAVDHAAAGS  120

Query  879   FDTAMQLLNRQVGAVNFAPLKSRFLEVYKASRTYLPATAGLPPLVNYVRRTVEETDSRKV  938
             F+TAM+LL+RQ+G VNFAPLK  FL+ Y  SRT L     LP L  Y  R   E  ++  
Sbjct  121   FETAMRLLHRQLGVVNFAPLKPLFLDAYAGSRTSLRGLPSLPSLPGYPERNWSEDGAKNG  180

Query  939   LPIIPKDLETIANVDLQEGYAAMRANRLEDGVKIFKGILHSILVNTVSSEAEVEQAKKII  998
              P +   L  +    LQ  Y      +  + ++ F+ ILHSI +  V S+ EV++ +++I
Sbjct  181   PPALVYKLSQLEE-RLQAAYKLTTEGKFSEALRKFRSILHSIPLLVVDSKQEVDEVQQLI  239

Query  999   ETAREYILAMSIELERRSLSTDTPENLKRSLELSAYFTIPKLEVAHRQLALMAAMKLAFA  1058
                REYI+ + +E +R+ L   + ++ KR  EL+AYFT   L+  H  L L  AM L F 
Sbjct  240   TICREYIVGLRMETKRKEL-PKSLDDQKRQAELAAYFTHCNLQPVHLILTLRTAMNLFFK  298

Query  1059  NKNFSSALSFANRMLANGGSAKLLDQAKKIKAQCERSPQDKIDIEFDQFAEFDICAASFT  1118
              KNF +A SFA R+L  G   K+  QA+K+   CE++P D   + +D+   F +C A+F 
Sbjct  299   LKNFKTAASFARRLLELGPPPKVAQQARKVLQACEKNPTDAHQLNYDEHNPFVVCGATFV  358

Query  1119  PIYGGSPSVSDPFTGAKYHEQYKGTVCRISEVTEIGAPASGLRL  1162
             PIY G P V  P+ GA Y  ++KG VC + +V EIG  ASGLR+
Sbjct  359   PIYRGKPDVKCPYCGASYVPEFKGQVCTVCQVAEIGKDASGLRI  402



Lambda      K        H        a         alpha
   0.318    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1493974660


Query= TCONS_00022139

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated regio...  240     2e-75


>CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated region.  This 
region is composed of WD40 repeats.
Length=439

 Score = 240 bits (615),  Expect = 2e-75, Method: Composition-based stats.
 Identities = 88/237 (37%), Positives = 124/237 (52%), Gaps = 25/237 (11%)

Query  213  EKHVKSYDFAKNLE---SPPMLSLRKLGSPWVPPRTLSYNPAERAILVTSPTDGGAYELI  269
            E  V+SY+             LSL++LGS  + P+TLS+NP  R +LV      G Y + 
Sbjct  1    ENEVRSYNIKGIENKDGELLSLSLKELGSVEIYPQTLSHNPNGRFVLVC---GDGEYIIY  57

Query  270  HLPRDATGAVEPTDVKRGQASSAVFVARNRFAVFSQANQQVDIKDLSNSTTKTIKLPSGT  329
                    A+   +   G+    V+V+RNRFAV  ++      K+   S TK+IKLP   
Sbjct  58   T-------ALAWRNKAYGKGLDFVWVSRNRFAVLEKSGTVKIFKNFKESVTKSIKLPYSV  110

Query  330  TDIYFGGTGALLFITPTS-VVLFDIQQKKQLAELAVSGVKYVVWSNDGLYAALLSKHNVT  388
              I+ GG G+LL +     +  +D +Q K +  + VS VKYV+WS+DG   ALLSK  V 
Sbjct  111  DKIFGGGPGSLLGVKSEGSLSFYDWEQGKLVRRIDVSPVKYVIWSDDGELVALLSKDTVY  170

Query  389  IVTKSLEQV--------SSLHE-TIRIKSAAWDDAGVLLYSTLNHVKYSLLNGYVLI  436
            I+  +LE V          LHE + R+KS AWD   V +Y+T NH+KY L+NG   I
Sbjct  171  ILNYNLEAVEDGVEDAFEVLHEISERVKSGAWDG-DVFIYTTSNHLKY-LVNGDSGI  225



Lambda      K        H        a         alpha
   0.319    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00022140

Length=1076
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated regio...  559     0.0   
CDD:462050 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-ter...  361     1e-115


>CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated region.  This 
region is composed of WD40 repeats.
Length=439

 Score = 559 bits (1444),  Expect = 0.0, Method: Composition-based stats.
 Identities = 207/451 (46%), Positives = 281/451 (62%), Gaps = 32/451 (7%)

Query  213  EKHVKSYDFAKNLE---SPPMLSLRKLGSPWVPPRTLSYNPAERAILVTSPTDGGAYELI  269
            E  V+SY+             LSL++LGS  + P+TLS+NP  R +LV      G Y + 
Sbjct  1    ENEVRSYNIKGIENKDGELLSLSLKELGSVEIYPQTLSHNPNGRFVLVC---GDGEYIIY  57

Query  270  HLPRDATGAVEPTDVKRGQASSAVFVARNRFAVFSQANQQVDIKDLSNSTTKTIKLPSGT  329
                    A+   +   G+    V+V+RNRFAV  ++      K+   S TK+IKLP   
Sbjct  58   T-------ALAWRNKAYGKGLDFVWVSRNRFAVLEKSGTVKIFKNFKESVTKSIKLPYSV  110

Query  330  TDIYFGGTGALLFITPTS-VVLFDIQQKKQLAELAVSGVKYVVWSNDGLYAALLSKHNVT  388
              I+ GG G+LL +     +  +D +Q K +  + VS VKYV+WS+DG   ALLSK  V 
Sbjct  111  DKIFGGGPGSLLGVKSEGSLSFYDWEQGKLVRRIDVSPVKYVIWSDDGELVALLSKDTVY  170

Query  389  IVTKSLEQV--------SSLHE-TIRIKSAAWDDAGVLLYSTLNHVKYSLLNGDNGIIRT  439
            I+  +LE V          LHE + R+KS AWD   V +Y+T NH+KY L+NGD+GII+T
Sbjct  171  ILNYNLEAVEDGVEDAFEVLHEISERVKSGAWDG-DVFIYTTSNHLKY-LVNGDSGIIKT  228

Query  440  LDHTVYLVKVKGR--SVYCLDRNAKPRVLEIDPTEYRFKLALVKRNYDEMLQIIKTSSLV  497
            LD T+YL+   G+   VY LDR+      EIDP+E  FKLAL++++Y+E+L+II+ S+L+
Sbjct  229  LDKTLYLLGYLGKENRVYLLDRDGNVVSYEIDPSELEFKLALLRKDYEEVLRIIRASNLL  288

Query  498  -----GQSIISYLQKKGYPEIALQFVQDPQTRFELALECGNLEVAIEMARELDRPKLWSR  552
                 GQ II YL+KKGYPEIALQFVQDP TRF+LALE GNL+VA+E+A+ELD P  W R
Sbjct  289  PPKDEGQKIIRYLEKKGYPEIALQFVQDPDTRFDLALELGNLDVALEIAKELDDPAKWKR  348

Query  553  LGMEALAHGNHQTVEMTYQKQRNFDKLSFLYLSIGDSEKLARMAKIAEHRGDFTSRFQNA  612
            LG  AL+ GN +  E  YQK ++FDKL  LYLS G+ EKL ++AKIAE RGD+ S FQNA
Sbjct  349  LGDAALSQGNIKLAEEAYQKAKDFDKLLLLYLSTGNMEKLKKLAKIAEKRGDYNSAFQNA  408

Query  613  IYRGDVDDRIQMFKEVDLYPLAYLTAKSHGL  643
            +Y GDV+  + +  +    P AYL AK++G 
Sbjct  409  LYLGDVEKCVDILIKTGRLPEAYLFAKTYGP  439


>CDD:462050 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus. 
 This family represents the C-terminus (approximately 500 residues) 
of the eukaryotic coatomer alpha subunit. Coatomer (COPI) 
is a large cytosolic protein complex which forms a coat 
around vesicles budding from the Golgi apparatus. Such coatomer-coated 
vesicles have been proposed to play a role in many 
distinct steps of intracellular transport. Note that many 
family members also contain the pfam04053 domain.
Length=402

 Score = 361 bits (928),  Expect = 1e-115, Method: Composition-based stats.
 Identities = 146/404 (36%), Positives = 210/404 (52%), Gaps = 30/404 (7%)

Query  694   FEKALLGEVG------VEDEDAAAL-------------GLEPEEEGEEAVLARETLEDEE  734
             FE AL    G       ED+D AA                   E+ ++     E   D++
Sbjct  3     FEGALAAAGGGSAAAVDEDDDEAAGAGWGDDADLDLDEANGGIEDEDDDEEEGEDGGDDD  62

Query  735   EDVAGWDMGEEINMEEDVDFVNVDSAEAGA-------GSSEADLWARNSPLAADHVAAGS  787
             E+  GWD+ E++ +  ++D      A           G   + +W  NS LA DH AAGS
Sbjct  63    EE-GGWDV-EDLELPPELDVGAAAGAARSGYFVAPTPGVPPSQIWTNNSQLAVDHAAAGS  120

Query  788   FDTAMQLLNRQVGAVNFAPLKSRFLEVYKASRTYLPATAGLPPLVNYVRRTVEETDSRKV  847
             F+TAM+LL+RQ+G VNFAPLK  FL+ Y  SRT L     LP L  Y  R   E  ++  
Sbjct  121   FETAMRLLHRQLGVVNFAPLKPLFLDAYAGSRTSLRGLPSLPSLPGYPERNWSEDGAKNG  180

Query  848   LPIIPKDLETIANVDLQEGYAAMRANRLEDGVKIFKGILHSILVNTVSSEAEVEQAKKII  907
              P +   L  +    LQ  Y      +  + ++ F+ ILHSI +  V S+ EV++ +++I
Sbjct  181   PPALVYKLSQLEE-RLQAAYKLTTEGKFSEALRKFRSILHSIPLLVVDSKQEVDEVQQLI  239

Query  908   ETAREYILAMSIELERRSLSTDTPENLKRSLELSAYFTIPKLEVAHRQLALMAAMKLAFA  967
                REYI+ + +E +R+ L   + ++ KR  EL+AYFT   L+  H  L L  AM L F 
Sbjct  240   TICREYIVGLRMETKRKEL-PKSLDDQKRQAELAAYFTHCNLQPVHLILTLRTAMNLFFK  298

Query  968   NKNFSSALSFANRMLANGGSAKLLDQAKKIKAQCERSPQDKIDIEFDQFAEFDICAASFT  1027
              KNF +A SFA R+L  G   K+  QA+K+   CE++P D   + +D+   F +C A+F 
Sbjct  299   LKNFKTAASFARRLLELGPPPKVAQQARKVLQACEKNPTDAHQLNYDEHNPFVVCGATFV  358

Query  1028  PIYGGSPSVSDPFTGAKYHEQYKGTVCRISEVTEIGAPASGLRL  1071
             PIY G P V  P+ GA Y  ++KG VC + +V EIG  ASGLR+
Sbjct  359   PIYRGKPDVKCPYCGASYVPEFKGQVCTVCQVAEIGKDASGLRI  402



Lambda      K        H        a         alpha
   0.317    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1387558480


Query= TCONS_00022141

Length=768
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated regio...  537     0.0  


>CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated region.  This 
region is composed of WD40 repeats.
Length=439

 Score = 537 bits (1386),  Expect = 0.0, Method: Composition-based stats.
 Identities = 200/436 (46%), Positives = 272/436 (62%), Gaps = 32/436 (7%)

Query  349  EKHVKSYDFAKNLE---SPPMLSLRKLGSPWVPPRTLSYNPAERAILVTSPTDGGAYELI  405
            E  V+SY+             LSL++LGS  + P+TLS+NP  R +LV      G Y + 
Sbjct  1    ENEVRSYNIKGIENKDGELLSLSLKELGSVEIYPQTLSHNPNGRFVLVC---GDGEYIIY  57

Query  406  HLPRDATGAVEPTDVKRGQASSAVFVARNRFAVFSQANQQVDIKDLSNSTTKTIKLPSGT  465
                    A+   +   G+    V+V+RNRFAV  ++      K+   S TK+IKLP   
Sbjct  58   T-------ALAWRNKAYGKGLDFVWVSRNRFAVLEKSGTVKIFKNFKESVTKSIKLPYSV  110

Query  466  TDIYFGGTGALLFITPTS-VVLFDIQQKKQLAELAVSGVKYVVWSNDGLYAALLSKHNVT  524
              I+ GG G+LL +     +  +D +Q K +  + VS VKYV+WS+DG   ALLSK  V 
Sbjct  111  DKIFGGGPGSLLGVKSEGSLSFYDWEQGKLVRRIDVSPVKYVIWSDDGELVALLSKDTVY  170

Query  525  IVTKSLEQV--------SSLHE-TIRIKSAAWDDAGVLLYSTLNHVKYSLLNGDNGIIRT  575
            I+  +LE V          LHE + R+KS AWD   V +Y+T NH+KY L+NGD+GII+T
Sbjct  171  ILNYNLEAVEDGVEDAFEVLHEISERVKSGAWDG-DVFIYTTSNHLKY-LVNGDSGIIKT  228

Query  576  LDHTVYLVKVKGR--SVYCLDRNAKPRVLEIDPTEYRFKLALVKRNYDEMLQIIKTSSLV  633
            LD T+YL+   G+   VY LDR+      EIDP+E  FKLAL++++Y+E+L+II+ S+L+
Sbjct  229  LDKTLYLLGYLGKENRVYLLDRDGNVVSYEIDPSELEFKLALLRKDYEEVLRIIRASNLL  288

Query  634  -----GQSIISYLQKKGYPEIALQFVQDPQTRFELALECGNLEVAIEMARELDRPKLWSR  688
                 GQ II YL+KKGYPEIALQFVQDP TRF+LALE GNL+VA+E+A+ELD P  W R
Sbjct  289  PPKDEGQKIIRYLEKKGYPEIALQFVQDPDTRFDLALELGNLDVALEIAKELDDPAKWKR  348

Query  689  LGMEALAHGNHQTVEMTYQKQRNFDKLSFLYLSIGDSEKLARMAKIAEHRGDFTSRFQNA  748
            LG  AL+ GN +  E  YQK ++FDKL  LYLS G+ EKL ++AKIAE RGD+ S FQNA
Sbjct  349  LGDAALSQGNIKLAEEAYQKAKDFDKLLLLYLSTGNMEKLKKLAKIAEKRGDYNSAFQNA  408

Query  749  IYRGDVDDRIQMFKEV  764
            +Y GDV+  + +  + 
Sbjct  409  LYLGDVEKCVDILIKT  424



Lambda      K        H        a         alpha
   0.321    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 980772448


Query= TCONS_00022143

Length=1212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated regio...  561     0.0   
CDD:462050 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-ter...  361     1e-114


>CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated region.  This 
region is composed of WD40 repeats.
Length=439

 Score = 561 bits (1449),  Expect = 0.0, Method: Composition-based stats.
 Identities = 207/451 (46%), Positives = 281/451 (62%), Gaps = 32/451 (7%)

Query  349  EKHVKSYDFAKNLE---SPPMLSLRKLGSPWVPPRTLSYNPAERAILVTSPTDGGAYELI  405
            E  V+SY+             LSL++LGS  + P+TLS+NP  R +LV      G Y + 
Sbjct  1    ENEVRSYNIKGIENKDGELLSLSLKELGSVEIYPQTLSHNPNGRFVLVC---GDGEYIIY  57

Query  406  HLPRDATGAVEPTDVKRGQASSAVFVARNRFAVFSQANQQVDIKDLSNSTTKTIKLPSGT  465
                    A+   +   G+    V+V+RNRFAV  ++      K+   S TK+IKLP   
Sbjct  58   T-------ALAWRNKAYGKGLDFVWVSRNRFAVLEKSGTVKIFKNFKESVTKSIKLPYSV  110

Query  466  TDIYFGGTGALLFITPTS-VVLFDIQQKKQLAELAVSGVKYVVWSNDGLYAALLSKHNVT  524
              I+ GG G+LL +     +  +D +Q K +  + VS VKYV+WS+DG   ALLSK  V 
Sbjct  111  DKIFGGGPGSLLGVKSEGSLSFYDWEQGKLVRRIDVSPVKYVIWSDDGELVALLSKDTVY  170

Query  525  IVTKSLEQV--------SSLHE-TIRIKSAAWDDAGVLLYSTLNHVKYSLLNGDNGIIRT  575
            I+  +LE V          LHE + R+KS AWD   V +Y+T NH+KY L+NGD+GII+T
Sbjct  171  ILNYNLEAVEDGVEDAFEVLHEISERVKSGAWDG-DVFIYTTSNHLKY-LVNGDSGIIKT  228

Query  576  LDHTVYLVKVKGR--SVYCLDRNAKPRVLEIDPTEYRFKLALVKRNYDEMLQIIKTSSLV  633
            LD T+YL+   G+   VY LDR+      EIDP+E  FKLAL++++Y+E+L+II+ S+L+
Sbjct  229  LDKTLYLLGYLGKENRVYLLDRDGNVVSYEIDPSELEFKLALLRKDYEEVLRIIRASNLL  288

Query  634  -----GQSIISYLQKKGYPEIALQFVQDPQTRFELALECGNLEVAIEMARELDRPKLWSR  688
                 GQ II YL+KKGYPEIALQFVQDP TRF+LALE GNL+VA+E+A+ELD P  W R
Sbjct  289  PPKDEGQKIIRYLEKKGYPEIALQFVQDPDTRFDLALELGNLDVALEIAKELDDPAKWKR  348

Query  689  LGMEALAHGNHQTVEMTYQKQRNFDKLSFLYLSIGDSEKLARMAKIAEHRGDFTSRFQNA  748
            LG  AL+ GN +  E  YQK ++FDKL  LYLS G+ EKL ++AKIAE RGD+ S FQNA
Sbjct  349  LGDAALSQGNIKLAEEAYQKAKDFDKLLLLYLSTGNMEKLKKLAKIAEKRGDYNSAFQNA  408

Query  749  IYRGDVDDRIQMFKEVDLYPLAYLTAKSHGL  779
            +Y GDV+  + +  +    P AYL AK++G 
Sbjct  409  LYLGDVEKCVDILIKTGRLPEAYLFAKTYGP  439


>CDD:462050 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus. 
 This family represents the C-terminus (approximately 500 residues) 
of the eukaryotic coatomer alpha subunit. Coatomer (COPI) 
is a large cytosolic protein complex which forms a coat 
around vesicles budding from the Golgi apparatus. Such coatomer-coated 
vesicles have been proposed to play a role in many 
distinct steps of intracellular transport. Note that many 
family members also contain the pfam04053 domain.
Length=402

 Score = 361 bits (928),  Expect = 1e-114, Method: Composition-based stats.
 Identities = 146/404 (36%), Positives = 210/404 (52%), Gaps = 30/404 (7%)

Query  830   FEKALLGEVG------VEDEDAAAL-------------GLEPEEEGEEAVLARETLEDEE  870
             FE AL    G       ED+D AA                   E+ ++     E   D++
Sbjct  3     FEGALAAAGGGSAAAVDEDDDEAAGAGWGDDADLDLDEANGGIEDEDDDEEEGEDGGDDD  62

Query  871   EDVAGWDMGEEINMEEDVDFVNVDSAEAGA-------GSSEADLWARNSPLAADHVAAGS  923
             E+  GWD+ E++ +  ++D      A           G   + +W  NS LA DH AAGS
Sbjct  63    EE-GGWDV-EDLELPPELDVGAAAGAARSGYFVAPTPGVPPSQIWTNNSQLAVDHAAAGS  120

Query  924   FDTAMQLLNRQVGAVNFAPLKSRFLEVYKASRTYLPATAGLPPLVNYVRRTVEETDSRKV  983
             F+TAM+LL+RQ+G VNFAPLK  FL+ Y  SRT L     LP L  Y  R   E  ++  
Sbjct  121   FETAMRLLHRQLGVVNFAPLKPLFLDAYAGSRTSLRGLPSLPSLPGYPERNWSEDGAKNG  180

Query  984   LPIIPKDLETIANVDLQEGYAAMRANRLEDGVKIFKGILHSILVNTVSSEAEVEQAKKII  1043
              P +   L  +    LQ  Y      +  + ++ F+ ILHSI +  V S+ EV++ +++I
Sbjct  181   PPALVYKLSQLEE-RLQAAYKLTTEGKFSEALRKFRSILHSIPLLVVDSKQEVDEVQQLI  239

Query  1044  ETAREYILAMSIELERRSLSTDTPENLKRSLELSAYFTIPKLEVAHRQLALMAAMKLAFA  1103
                REYI+ + +E +R+ L   + ++ KR  EL+AYFT   L+  H  L L  AM L F 
Sbjct  240   TICREYIVGLRMETKRKEL-PKSLDDQKRQAELAAYFTHCNLQPVHLILTLRTAMNLFFK  298

Query  1104  NKNFSSALSFANRMLANGGSAKLLDQAKKIKAQCERSPQDKIDIEFDQFAEFDICAASFT  1163
              KNF +A SFA R+L  G   K+  QA+K+   CE++P D   + +D+   F +C A+F 
Sbjct  299   LKNFKTAASFARRLLELGPPPKVAQQARKVLQACEKNPTDAHQLNYDEHNPFVVCGATFV  358

Query  1164  PIYGGSPSVSDPFTGAKYHEQYKGTVCRISEVTEIGAPASGLRL  1207
             PIY G P V  P+ GA Y  ++KG VC + +V EIG  ASGLR+
Sbjct  359   PIYRGKPDVKCPYCGASYVPEFKGQVCTVCQVAEIGKDASGLRI  402



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1556805370


Query= TCONS_00026938

Length=1076
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated regio...  559     0.0   
CDD:462050 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-ter...  361     1e-115


>CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated region.  This 
region is composed of WD40 repeats.
Length=439

 Score = 559 bits (1444),  Expect = 0.0, Method: Composition-based stats.
 Identities = 207/451 (46%), Positives = 281/451 (62%), Gaps = 32/451 (7%)

Query  213  EKHVKSYDFAKNLE---SPPMLSLRKLGSPWVPPRTLSYNPAERAILVTSPTDGGAYELI  269
            E  V+SY+             LSL++LGS  + P+TLS+NP  R +LV      G Y + 
Sbjct  1    ENEVRSYNIKGIENKDGELLSLSLKELGSVEIYPQTLSHNPNGRFVLVC---GDGEYIIY  57

Query  270  HLPRDATGAVEPTDVKRGQASSAVFVARNRFAVFSQANQQVDIKDLSNSTTKTIKLPSGT  329
                    A+   +   G+    V+V+RNRFAV  ++      K+   S TK+IKLP   
Sbjct  58   T-------ALAWRNKAYGKGLDFVWVSRNRFAVLEKSGTVKIFKNFKESVTKSIKLPYSV  110

Query  330  TDIYFGGTGALLFITPTS-VVLFDIQQKKQLAELAVSGVKYVVWSNDGLYAALLSKHNVT  388
              I+ GG G+LL +     +  +D +Q K +  + VS VKYV+WS+DG   ALLSK  V 
Sbjct  111  DKIFGGGPGSLLGVKSEGSLSFYDWEQGKLVRRIDVSPVKYVIWSDDGELVALLSKDTVY  170

Query  389  IVTKSLEQV--------SSLHE-TIRIKSAAWDDAGVLLYSTLNHVKYSLLNGDNGIIRT  439
            I+  +LE V          LHE + R+KS AWD   V +Y+T NH+KY L+NGD+GII+T
Sbjct  171  ILNYNLEAVEDGVEDAFEVLHEISERVKSGAWDG-DVFIYTTSNHLKY-LVNGDSGIIKT  228

Query  440  LDHTVYLVKVKGR--SVYCLDRNAKPRVLEIDPTEYRFKLALVKRNYDEMLQIIKTSSLV  497
            LD T+YL+   G+   VY LDR+      EIDP+E  FKLAL++++Y+E+L+II+ S+L+
Sbjct  229  LDKTLYLLGYLGKENRVYLLDRDGNVVSYEIDPSELEFKLALLRKDYEEVLRIIRASNLL  288

Query  498  -----GQSIISYLQKKGYPEIALQFVQDPQTRFELALECGNLEVAIEMARELDRPKLWSR  552
                 GQ II YL+KKGYPEIALQFVQDP TRF+LALE GNL+VA+E+A+ELD P  W R
Sbjct  289  PPKDEGQKIIRYLEKKGYPEIALQFVQDPDTRFDLALELGNLDVALEIAKELDDPAKWKR  348

Query  553  LGMEALAHGNHQTVEMTYQKQRNFDKLSFLYLSIGDSEKLARMAKIAEHRGDFTSRFQNA  612
            LG  AL+ GN +  E  YQK ++FDKL  LYLS G+ EKL ++AKIAE RGD+ S FQNA
Sbjct  349  LGDAALSQGNIKLAEEAYQKAKDFDKLLLLYLSTGNMEKLKKLAKIAEKRGDYNSAFQNA  408

Query  613  IYRGDVDDRIQMFKEVDLYPLAYLTAKSHGL  643
            +Y GDV+  + +  +    P AYL AK++G 
Sbjct  409  LYLGDVEKCVDILIKTGRLPEAYLFAKTYGP  439


>CDD:462050 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus. 
 This family represents the C-terminus (approximately 500 residues) 
of the eukaryotic coatomer alpha subunit. Coatomer (COPI) 
is a large cytosolic protein complex which forms a coat 
around vesicles budding from the Golgi apparatus. Such coatomer-coated 
vesicles have been proposed to play a role in many 
distinct steps of intracellular transport. Note that many 
family members also contain the pfam04053 domain.
Length=402

 Score = 361 bits (928),  Expect = 1e-115, Method: Composition-based stats.
 Identities = 146/404 (36%), Positives = 210/404 (52%), Gaps = 30/404 (7%)

Query  694   FEKALLGEVG------VEDEDAAAL-------------GLEPEEEGEEAVLARETLEDEE  734
             FE AL    G       ED+D AA                   E+ ++     E   D++
Sbjct  3     FEGALAAAGGGSAAAVDEDDDEAAGAGWGDDADLDLDEANGGIEDEDDDEEEGEDGGDDD  62

Query  735   EDVAGWDMGEEINMEEDVDFVNVDSAEAGA-------GSSEADLWARNSPLAADHVAAGS  787
             E+  GWD+ E++ +  ++D      A           G   + +W  NS LA DH AAGS
Sbjct  63    EE-GGWDV-EDLELPPELDVGAAAGAARSGYFVAPTPGVPPSQIWTNNSQLAVDHAAAGS  120

Query  788   FDTAMQLLNRQVGAVNFAPLKSRFLEVYKASRTYLPATAGLPPLVNYVRRTVEETDSRKV  847
             F+TAM+LL+RQ+G VNFAPLK  FL+ Y  SRT L     LP L  Y  R   E  ++  
Sbjct  121   FETAMRLLHRQLGVVNFAPLKPLFLDAYAGSRTSLRGLPSLPSLPGYPERNWSEDGAKNG  180

Query  848   LPIIPKDLETIANVDLQEGYAAMRANRLEDGVKIFKGILHSILVNTVSSEAEVEQAKKII  907
              P +   L  +    LQ  Y      +  + ++ F+ ILHSI +  V S+ EV++ +++I
Sbjct  181   PPALVYKLSQLEE-RLQAAYKLTTEGKFSEALRKFRSILHSIPLLVVDSKQEVDEVQQLI  239

Query  908   ETAREYILAMSIELERRSLSTDTPENLKRSLELSAYFTIPKLEVAHRQLALMAAMKLAFA  967
                REYI+ + +E +R+ L   + ++ KR  EL+AYFT   L+  H  L L  AM L F 
Sbjct  240   TICREYIVGLRMETKRKEL-PKSLDDQKRQAELAAYFTHCNLQPVHLILTLRTAMNLFFK  298

Query  968   NKNFSSALSFANRMLANGGSAKLLDQAKKIKAQCERSPQDKIDIEFDQFAEFDICAASFT  1027
              KNF +A SFA R+L  G   K+  QA+K+   CE++P D   + +D+   F +C A+F 
Sbjct  299   LKNFKTAASFARRLLELGPPPKVAQQARKVLQACEKNPTDAHQLNYDEHNPFVVCGATFV  358

Query  1028  PIYGGSPSVSDPFTGAKYHEQYKGTVCRISEVTEIGAPASGLRL  1071
             PIY G P V  P+ GA Y  ++KG VC + +V EIG  ASGLR+
Sbjct  359   PIYRGKPDVKCPYCGASYVPEFKGQVCTVCQVAEIGKDASGLRI  402



Lambda      K        H        a         alpha
   0.317    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1387558480


Query= TCONS_00022142

Length=577
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated regio...  241     3e-74


>CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated region.  This 
region is composed of WD40 repeats.
Length=439

 Score = 241 bits (618),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 88/237 (37%), Positives = 124/237 (52%), Gaps = 25/237 (11%)

Query  349  EKHVKSYDFAKNLE---SPPMLSLRKLGSPWVPPRTLSYNPAERAILVTSPTDGGAYELI  405
            E  V+SY+             LSL++LGS  + P+TLS+NP  R +LV      G Y + 
Sbjct  1    ENEVRSYNIKGIENKDGELLSLSLKELGSVEIYPQTLSHNPNGRFVLVC---GDGEYIIY  57

Query  406  HLPRDATGAVEPTDVKRGQASSAVFVARNRFAVFSQANQQVDIKDLSNSTTKTIKLPSGT  465
                    A+   +   G+    V+V+RNRFAV  ++      K+   S TK+IKLP   
Sbjct  58   T-------ALAWRNKAYGKGLDFVWVSRNRFAVLEKSGTVKIFKNFKESVTKSIKLPYSV  110

Query  466  TDIYFGGTGALLFITPTS-VVLFDIQQKKQLAELAVSGVKYVVWSNDGLYAALLSKHNVT  524
              I+ GG G+LL +     +  +D +Q K +  + VS VKYV+WS+DG   ALLSK  V 
Sbjct  111  DKIFGGGPGSLLGVKSEGSLSFYDWEQGKLVRRIDVSPVKYVIWSDDGELVALLSKDTVY  170

Query  525  IVTKSLEQV--------SSLHE-TIRIKSAAWDDAGVLLYSTLNHVKYSLLNGYVLI  572
            I+  +LE V          LHE + R+KS AWD   V +Y+T NH+KY L+NG   I
Sbjct  171  ILNYNLEAVEDGVEDAFEVLHEISERVKSGAWDG-DVFIYTTSNHLKY-LVNGDSGI  225



Lambda      K        H        a         alpha
   0.321    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 724797580


Query= TCONS_00022144

Length=1212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated regio...  561     0.0   
CDD:462050 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-ter...  361     1e-114


>CDD:427679 pfam04053, Coatomer_WDAD, Coatomer WD associated region.  This 
region is composed of WD40 repeats.
Length=439

 Score = 561 bits (1449),  Expect = 0.0, Method: Composition-based stats.
 Identities = 207/451 (46%), Positives = 281/451 (62%), Gaps = 32/451 (7%)

Query  349  EKHVKSYDFAKNLE---SPPMLSLRKLGSPWVPPRTLSYNPAERAILVTSPTDGGAYELI  405
            E  V+SY+             LSL++LGS  + P+TLS+NP  R +LV      G Y + 
Sbjct  1    ENEVRSYNIKGIENKDGELLSLSLKELGSVEIYPQTLSHNPNGRFVLVC---GDGEYIIY  57

Query  406  HLPRDATGAVEPTDVKRGQASSAVFVARNRFAVFSQANQQVDIKDLSNSTTKTIKLPSGT  465
                    A+   +   G+    V+V+RNRFAV  ++      K+   S TK+IKLP   
Sbjct  58   T-------ALAWRNKAYGKGLDFVWVSRNRFAVLEKSGTVKIFKNFKESVTKSIKLPYSV  110

Query  466  TDIYFGGTGALLFITPTS-VVLFDIQQKKQLAELAVSGVKYVVWSNDGLYAALLSKHNVT  524
              I+ GG G+LL +     +  +D +Q K +  + VS VKYV+WS+DG   ALLSK  V 
Sbjct  111  DKIFGGGPGSLLGVKSEGSLSFYDWEQGKLVRRIDVSPVKYVIWSDDGELVALLSKDTVY  170

Query  525  IVTKSLEQV--------SSLHE-TIRIKSAAWDDAGVLLYSTLNHVKYSLLNGDNGIIRT  575
            I+  +LE V          LHE + R+KS AWD   V +Y+T NH+KY L+NGD+GII+T
Sbjct  171  ILNYNLEAVEDGVEDAFEVLHEISERVKSGAWDG-DVFIYTTSNHLKY-LVNGDSGIIKT  228

Query  576  LDHTVYLVKVKGR--SVYCLDRNAKPRVLEIDPTEYRFKLALVKRNYDEMLQIIKTSSLV  633
            LD T+YL+   G+   VY LDR+      EIDP+E  FKLAL++++Y+E+L+II+ S+L+
Sbjct  229  LDKTLYLLGYLGKENRVYLLDRDGNVVSYEIDPSELEFKLALLRKDYEEVLRIIRASNLL  288

Query  634  -----GQSIISYLQKKGYPEIALQFVQDPQTRFELALECGNLEVAIEMARELDRPKLWSR  688
                 GQ II YL+KKGYPEIALQFVQDP TRF+LALE GNL+VA+E+A+ELD P  W R
Sbjct  289  PPKDEGQKIIRYLEKKGYPEIALQFVQDPDTRFDLALELGNLDVALEIAKELDDPAKWKR  348

Query  689  LGMEALAHGNHQTVEMTYQKQRNFDKLSFLYLSIGDSEKLARMAKIAEHRGDFTSRFQNA  748
            LG  AL+ GN +  E  YQK ++FDKL  LYLS G+ EKL ++AKIAE RGD+ S FQNA
Sbjct  349  LGDAALSQGNIKLAEEAYQKAKDFDKLLLLYLSTGNMEKLKKLAKIAEKRGDYNSAFQNA  408

Query  749  IYRGDVDDRIQMFKEVDLYPLAYLTAKSHGL  779
            +Y GDV+  + +  +    P AYL AK++G 
Sbjct  409  LYLGDVEKCVDILIKTGRLPEAYLFAKTYGP  439


>CDD:462050 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus. 
 This family represents the C-terminus (approximately 500 residues) 
of the eukaryotic coatomer alpha subunit. Coatomer (COPI) 
is a large cytosolic protein complex which forms a coat 
around vesicles budding from the Golgi apparatus. Such coatomer-coated 
vesicles have been proposed to play a role in many 
distinct steps of intracellular transport. Note that many 
family members also contain the pfam04053 domain.
Length=402

 Score = 361 bits (928),  Expect = 1e-114, Method: Composition-based stats.
 Identities = 146/404 (36%), Positives = 210/404 (52%), Gaps = 30/404 (7%)

Query  830   FEKALLGEVG------VEDEDAAAL-------------GLEPEEEGEEAVLARETLEDEE  870
             FE AL    G       ED+D AA                   E+ ++     E   D++
Sbjct  3     FEGALAAAGGGSAAAVDEDDDEAAGAGWGDDADLDLDEANGGIEDEDDDEEEGEDGGDDD  62

Query  871   EDVAGWDMGEEINMEEDVDFVNVDSAEAGA-------GSSEADLWARNSPLAADHVAAGS  923
             E+  GWD+ E++ +  ++D      A           G   + +W  NS LA DH AAGS
Sbjct  63    EE-GGWDV-EDLELPPELDVGAAAGAARSGYFVAPTPGVPPSQIWTNNSQLAVDHAAAGS  120

Query  924   FDTAMQLLNRQVGAVNFAPLKSRFLEVYKASRTYLPATAGLPPLVNYVRRTVEETDSRKV  983
             F+TAM+LL+RQ+G VNFAPLK  FL+ Y  SRT L     LP L  Y  R   E  ++  
Sbjct  121   FETAMRLLHRQLGVVNFAPLKPLFLDAYAGSRTSLRGLPSLPSLPGYPERNWSEDGAKNG  180

Query  984   LPIIPKDLETIANVDLQEGYAAMRANRLEDGVKIFKGILHSILVNTVSSEAEVEQAKKII  1043
              P +   L  +    LQ  Y      +  + ++ F+ ILHSI +  V S+ EV++ +++I
Sbjct  181   PPALVYKLSQLEE-RLQAAYKLTTEGKFSEALRKFRSILHSIPLLVVDSKQEVDEVQQLI  239

Query  1044  ETAREYILAMSIELERRSLSTDTPENLKRSLELSAYFTIPKLEVAHRQLALMAAMKLAFA  1103
                REYI+ + +E +R+ L   + ++ KR  EL+AYFT   L+  H  L L  AM L F 
Sbjct  240   TICREYIVGLRMETKRKEL-PKSLDDQKRQAELAAYFTHCNLQPVHLILTLRTAMNLFFK  298

Query  1104  NKNFSSALSFANRMLANGGSAKLLDQAKKIKAQCERSPQDKIDIEFDQFAEFDICAASFT  1163
              KNF +A SFA R+L  G   K+  QA+K+   CE++P D   + +D+   F +C A+F 
Sbjct  299   LKNFKTAASFARRLLELGPPPKVAQQARKVLQACEKNPTDAHQLNYDEHNPFVVCGATFV  358

Query  1164  PIYGGSPSVSDPFTGAKYHEQYKGTVCRISEVTEIGAPASGLRL  1207
             PIY G P V  P+ GA Y  ++KG VC + +V EIG  ASGLR+
Sbjct  359   PIYRGKPDVKCPYCGASYVPEFKGQVCTVCQVAEIGKDASGLRI  402



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1556805370


Query= TCONS_00022146

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00026939

Length=311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462331 pfam07986, TBCC, Tubulin binding cofactor C. Members o...  116     3e-33


>CDD:462331 pfam07986, TBCC, Tubulin binding cofactor C.  Members of this 
family are involved in the folding pathway of tubulins and 
form a beta helix structure.
Length=119

 Score = 116 bits (294),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 54/99 (55%), Gaps = 6/99 (6%)

Query  163  VPASITSLNHCVVDMSIPTANGKPYASLTVKDVNESLLICGQIDGPAHITGVENSVIVVS  222
            V   +++L++C + +        P +S+T+ D     +  G + G   I   EN  IVV+
Sbjct  2    VDVKLSNLSNCTIYL------LDPLSSVTIDDCKNCTIFLGPVSGSVFIRDCENCTIVVA  55

Query  223  CRQFRMHNCSGVDVYLSSSSNPIIEDCTNVRFGRIPRAY  261
            CRQ R+H+C+  D YL ++S PIIED T +RF     +Y
Sbjct  56   CRQLRIHDCTNCDFYLHTTSRPIIEDSTGIRFAPYNTSY  94



Lambda      K        H        a         alpha
   0.315    0.127    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00022147

Length=215


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00022148

Length=215


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00026940

Length=239


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00026941

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation...  169     2e-51


>CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation domain. 
 Members of this family are found in various subtilase propeptides, 
and adopt a ferredoxin-like fold, with an alpha+beta 
sandwich. Cleavage of the domain results in activation of 
the peptide.
Length=142

 Score = 169 bits (431),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 55/142 (39%), Positives = 85/142 (60%), Gaps = 0/142 (0%)

Query  39   DGWIKHDAAPASELIRFRLAMNQERAAEFERRVIDMSTPGHSSYGQHMKRDDVREFLRPP  98
             GW+K   A  SE IR R+A+ Q    + E+ ++D+STPG  +YG+H+  ++V     P 
Sbjct  1    PGWVKVGRADPSETIRLRIALKQRNLDQLEQLLMDVSTPGSPNYGKHLSPEEVASLFAPS  60

Query  99   EEVSDKVLSWLRSENVPAGSIESHGNWVTFTVPVSQAERMLRTRFYAFQHVETSTTQVRT  158
            +E  + VL+WL S  +    I ++G+W+TFT  V+QAE +  T F+ + H    TT++RT
Sbjct  61   DETVNAVLAWLESAGITITRISANGDWITFTGTVAQAESLFGTEFHYYSHKNGGTTRLRT  120

Query  159  LAYSVPHDVHRYIQMIQPTTRF  180
            L  SVP  +  ++  IQP TRF
Sbjct  121  LEPSVPAALADHVDGIQPLTRF  142



Lambda      K        H        a         alpha
   0.318    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00022149

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation...  169     2e-51


>CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation domain. 
 Members of this family are found in various subtilase propeptides, 
and adopt a ferredoxin-like fold, with an alpha+beta 
sandwich. Cleavage of the domain results in activation of 
the peptide.
Length=142

 Score = 169 bits (431),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 55/142 (39%), Positives = 85/142 (60%), Gaps = 0/142 (0%)

Query  39   DGWIKHDAAPASELIRFRLAMNQERAAEFERRVIDMSTPGHSSYGQHMKRDDVREFLRPP  98
             GW+K   A  SE IR R+A+ Q    + E+ ++D+STPG  +YG+H+  ++V     P 
Sbjct  1    PGWVKVGRADPSETIRLRIALKQRNLDQLEQLLMDVSTPGSPNYGKHLSPEEVASLFAPS  60

Query  99   EEVSDKVLSWLRSENVPAGSIESHGNWVTFTVPVSQAERMLRTRFYAFQHVETSTTQVRT  158
            +E  + VL+WL S  +    I ++G+W+TFT  V+QAE +  T F+ + H    TT++RT
Sbjct  61   DETVNAVLAWLESAGITITRISANGDWITFTGTVAQAESLFGTEFHYYSHKNGGTTRLRT  120

Query  159  LAYSVPHDVHRYIQMIQPTTRF  180
            L  SVP  +  ++  IQP TRF
Sbjct  121  LEPSVPAALADHVDGIQPLTRF  142



Lambda      K        H        a         alpha
   0.318    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00022150

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation...  170     8e-51


>CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation domain. 
 Members of this family are found in various subtilase propeptides, 
and adopt a ferredoxin-like fold, with an alpha+beta 
sandwich. Cleavage of the domain results in activation of 
the peptide.
Length=142

 Score = 170 bits (432),  Expect = 8e-51, Method: Composition-based stats.
 Identities = 55/142 (39%), Positives = 85/142 (60%), Gaps = 0/142 (0%)

Query  39   DGWIKHDAAPASELIRFRLAMNQERAAEFERRVIDMSTPGHSSYGQHMKRDDVREFLRPP  98
             GW+K   A  SE IR R+A+ Q    + E+ ++D+STPG  +YG+H+  ++V     P 
Sbjct  1    PGWVKVGRADPSETIRLRIALKQRNLDQLEQLLMDVSTPGSPNYGKHLSPEEVASLFAPS  60

Query  99   EEVSDKVLSWLRSENVPAGSIESHGNWVTFTVPVSQAERMLRTRFYAFQHVETSTTQVRT  158
            +E  + VL+WL S  +    I ++G+W+TFT  V+QAE +  T F+ + H    TT++RT
Sbjct  61   DETVNAVLAWLESAGITITRISANGDWITFTGTVAQAESLFGTEFHYYSHKNGGTTRLRT  120

Query  159  LAYSVPHDVHRYIQMIQPTTRF  180
            L  SVP  +  ++  IQP TRF
Sbjct  121  LEPSVPAALADHVDGIQPLTRF  142



Lambda      K        H        a         alpha
   0.317    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 753191712


Query= TCONS_00026943

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation...  169     2e-51


>CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation domain. 
 Members of this family are found in various subtilase propeptides, 
and adopt a ferredoxin-like fold, with an alpha+beta 
sandwich. Cleavage of the domain results in activation of 
the peptide.
Length=142

 Score = 169 bits (431),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 55/142 (39%), Positives = 85/142 (60%), Gaps = 0/142 (0%)

Query  39   DGWIKHDAAPASELIRFRLAMNQERAAEFERRVIDMSTPGHSSYGQHMKRDDVREFLRPP  98
             GW+K   A  SE IR R+A+ Q    + E+ ++D+STPG  +YG+H+  ++V     P 
Sbjct  1    PGWVKVGRADPSETIRLRIALKQRNLDQLEQLLMDVSTPGSPNYGKHLSPEEVASLFAPS  60

Query  99   EEVSDKVLSWLRSENVPAGSIESHGNWVTFTVPVSQAERMLRTRFYAFQHVETSTTQVRT  158
            +E  + VL+WL S  +    I ++G+W+TFT  V+QAE +  T F+ + H    TT++RT
Sbjct  61   DETVNAVLAWLESAGITITRISANGDWITFTGTVAQAESLFGTEFHYYSHKNGGTTRLRT  120

Query  159  LAYSVPHDVHRYIQMIQPTTRF  180
            L  SVP  +  ++  IQP TRF
Sbjct  121  LEPSVPAALADHVDGIQPLTRF  142



Lambda      K        H        a         alpha
   0.318    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00026942

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation...  169     2e-51


>CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation domain. 
 Members of this family are found in various subtilase propeptides, 
and adopt a ferredoxin-like fold, with an alpha+beta 
sandwich. Cleavage of the domain results in activation of 
the peptide.
Length=142

 Score = 169 bits (431),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 55/142 (39%), Positives = 85/142 (60%), Gaps = 0/142 (0%)

Query  39   DGWIKHDAAPASELIRFRLAMNQERAAEFERRVIDMSTPGHSSYGQHMKRDDVREFLRPP  98
             GW+K   A  SE IR R+A+ Q    + E+ ++D+STPG  +YG+H+  ++V     P 
Sbjct  1    PGWVKVGRADPSETIRLRIALKQRNLDQLEQLLMDVSTPGSPNYGKHLSPEEVASLFAPS  60

Query  99   EEVSDKVLSWLRSENVPAGSIESHGNWVTFTVPVSQAERMLRTRFYAFQHVETSTTQVRT  158
            +E  + VL+WL S  +    I ++G+W+TFT  V+QAE +  T F+ + H    TT++RT
Sbjct  61   DETVNAVLAWLESAGITITRISANGDWITFTGTVAQAESLFGTEFHYYSHKNGGTTRLRT  120

Query  159  LAYSVPHDVHRYIQMIQPTTRF  180
            L  SVP  +  ++  IQP TRF
Sbjct  121  LEPSVPAALADHVDGIQPLTRF  142



Lambda      K        H        a         alpha
   0.318    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00022151

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation...  169     2e-51


>CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation domain. 
 Members of this family are found in various subtilase propeptides, 
and adopt a ferredoxin-like fold, with an alpha+beta 
sandwich. Cleavage of the domain results in activation of 
the peptide.
Length=142

 Score = 169 bits (431),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 55/142 (39%), Positives = 85/142 (60%), Gaps = 0/142 (0%)

Query  39   DGWIKHDAAPASELIRFRLAMNQERAAEFERRVIDMSTPGHSSYGQHMKRDDVREFLRPP  98
             GW+K   A  SE IR R+A+ Q    + E+ ++D+STPG  +YG+H+  ++V     P 
Sbjct  1    PGWVKVGRADPSETIRLRIALKQRNLDQLEQLLMDVSTPGSPNYGKHLSPEEVASLFAPS  60

Query  99   EEVSDKVLSWLRSENVPAGSIESHGNWVTFTVPVSQAERMLRTRFYAFQHVETSTTQVRT  158
            +E  + VL+WL S  +    I ++G+W+TFT  V+QAE +  T F+ + H    TT++RT
Sbjct  61   DETVNAVLAWLESAGITITRISANGDWITFTGTVAQAESLFGTEFHYYSHKNGGTTRLRT  120

Query  159  LAYSVPHDVHRYIQMIQPTTRF  180
            L  SVP  +  ++  IQP TRF
Sbjct  121  LEPSVPAALADHVDGIQPLTRF  142



Lambda      K        H        a         alpha
   0.318    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00026946

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0729    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00022153

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462954 pfam10075, CSN8_PSD8_EIF3K, CSN8/PSMD8/EIF3K family. T...  85.4    2e-21


>CDD:462954 pfam10075, CSN8_PSD8_EIF3K, CSN8/PSMD8/EIF3K family.  This domain 
is conserved from plants to humans. It is a signature protein 
motif found in components of CSN (COP9 signalosome) where 
it functions as a structural scaffold for subunit-subunit 
interactions within the complex and is a key regulator of 
photomorphogenic development. It is found in Eukaryotic translation 
initiation factor 3 subunit K, a component of the eukaryotic 
translation initiation factor 3 (eIF-3) complex required 
for the initiation of protein synthesis. It is also found 
in 26S proteasome non-ATPase regulatory subunit 8 (PSMD8), 
a regulatory subunit of the 26S proteasome.
Length=137

 Score = 85.4 bits (212),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 42/141 (30%), Positives = 68/141 (48%), Gaps = 7/141 (5%)

Query  108  SKITGLYLMLLLSMGDSTSFHTVLEGLVEEASLQGKRVEDDLYIKYPVDLERSLMEGSYD  167
            + + G  L+ LL+  D   F  +L+ +     ++    + +  I+  + LE+ L +G Y 
Sbjct  4    ALLYGQILLKLLTQNDLADFRLLLKRI--PPDIK----QSNPEIQQLLTLEQLLWQGDYA  57

Query  168  KVWRETNSERVPSEDFALFSNVLVGTIRSEIADCSEKAYPSLPISNAKNLLFLDSEGAVI  227
            K ++   S    SED+  F + L  TIR EIA    KAY S+   +   LL LD+   + 
Sbjct  58   KFYQTLKSN-DWSEDYTPFVSGLEDTIRDEIAALVGKAYESISADDLAELLGLDTPEELK  116

Query  228  EFAQQRGWVLRDGRIYFPVEP  248
            +FA+ RGW L    +  P  P
Sbjct  117  KFAKARGWTLDADGVILPFNP  137



Lambda      K        H        a         alpha
   0.315    0.132    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00022154

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus. This fam...  158     1e-48
CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  64.1    3e-12


>CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus.  This family represents 
the N-terminal region of the eukaryotic epoxide hydrolase 
protein. Epoxide hydrolases (EC:3.3.2.3) comprise a group 
of functionally related enzymes that catalyze the addition 
of water to oxirane compounds (epoxides), thereby usually 
generating vicinal trans-diols. EHs have been found in all 
types of living organisms, including mammals, invertebrates, 
plants, fungi and bacteria. In animals, the major interest 
in EH is directed towards their detoxification capacity for 
epoxides since they are important safeguards against the cytotoxic 
and genotoxic potential of oxirane derivatives that 
are often reactive electrophiles because of the high tension 
of the three-membered ring system and the strong polarization 
of the C--O bonds. This is of significant relevance because 
epoxides are frequent intermediary metabolites which arise 
during the biotransformation of foreign compounds. This family 
is often found in conjunction with pfam00561.
Length=106

 Score = 158 bits (402),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 53/109 (49%), Positives = 72/109 (66%), Gaps = 3/109 (3%)

Query  16   PAPFQVAVPDEQIAELKTLVKLAKIAPPTLENQQQDRRYGVTSDWLTTMREKWLNDYDWR  75
              PF + VPDE++ +L+  + L +  P  LE    D  YGV  D+L  + + W + YDWR
Sbjct  1    IRPFTIHVPDEELDDLRQRLALTRW-PDELEGD--DWWYGVPLDYLRELVDYWRDGYDWR  57

Query  76   VTEARINSFPQFTTRIEDISLHFAALFSEKRDAVPVILLHGWPGSFLEF  124
              EAR+NSFPQFTT I+ + +HF  + S K DA+P++LLHGWPGSFLEF
Sbjct  58   AQEARLNSFPQFTTEIDGLDIHFVHVRSNKPDAIPLLLLHGWPGSFLEF  106


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 64.1 bits (156),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 42/214 (20%), Positives = 75/214 (35%), Gaps = 22/214 (10%)

Query  110  PVILLHGWPGSFLEFLPMLQ-LFKEEYTPTTLPYHLIVPSLPGYGFSSSPPLDKEYKSHD  168
            PV+LLHG PGS   +  +   L ++ +        +I   L G+G SS P    +Y++ D
Sbjct  2    PVLLLHGLPGSSDLWRKLAPALARDGFR-------VIALDLRGFGKSSRPKAQDDYRTDD  54

Query  169  VARVMDQLMKGLGFGGGYVAQGGDIGSRISRVLAVDF-ESCK--VNFCTIPRPEACSDDS  225
            +A  ++ +++ LG     +  G  +G  I+   A  + +  K  V    +  P    +  
Sbjct  55   LAEDLEYILEALGLEKVNL-VGHSMGGLIALAYAAKYPDRVKALVLLGALDPPHELDEAD  113

Query  226  LSASE-----RRGVERLNAFLTTGLAYAIEQGTKPSTIGLVLSTNPMALLAWVGEKFLDW  280
                        G     A    G   A         + L+ +   +      G    D+
Sbjct  114  RFILALFPGFFDGFVADFAPNPLGRLVAKLLALLLLRLRLLKALPLLNKRFPSG----DY  169

Query  281  VDEPLPLETILDFVSLYWFTETYPRAIYFYREDF  314
                  +   L F+   W TE   + +    E  
Sbjct  170  ALAKSLVTGALLFIE-TWSTELRAKFLGRLDEPT  202



Lambda      K        H        a         alpha
   0.322    0.138    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00022155

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  440     1e-149
CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex ...  223     1e-70 


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 440 bits (1133),  Expect = 1e-149, Method: Composition-based stats.
 Identities = 177/532 (33%), Positives = 290/532 (55%), Gaps = 21/532 (4%)

Query  14   RKGETFELRAGLVSQ--YAYERKEAIQKTIMAMTLGKDVSALFPDVLKNIATSDLEQKKL  71
             K    EL   L S      ++K A++K +  + LG+D+S LF +V+K +A+ D   K+L
Sbjct  2    EKRIQQELARILNSFRDDPRKKKNAVKKLLYLIMLGEDISFLFFEVVKLVASKDFTLKRL  61

Query  72   VYLYLMNYAKSHPDLCILAVNTFVQDSEDPNPLIRALAIRTMGCIRVDKMVDYMEEPLRK  131
             YLYLM  A+  PDL IL  N+  +D + PN LIR LA+RT+ CIRV ++   +   ++K
Sbjct  62   GYLYLMLLAEESPDLAILVTNSIQKDLQSPNQLIRGLALRTLSCIRVPELARDLAPDIKK  121

Query  132  TLRDESPYVRKTAAICVAKLFDLNPSLCLENGFLEMLQEMIGDPNPMVVANSVTALSEIH  191
             L D SPYVRK AA+ + KL+  +P L  +  F+  L+E++ D +P V + +V  L EI 
Sbjct  122  LLVDRSPYVRKKAALAILKLYRKSPDLVRD--FVPELKELLSDKDPGVQSAAVALLYEIC  179

Query  192  HAAPETRALQVTSNVLRKLLMALNECTEWGRVTILTTLAEYKTSDVTESEHICERVAPQF  251
                +   L++   + R+L   L     W +V IL  L      D    + + E +    
Sbjct  180  K--NDRLYLKLLPLLFRRLCNLLGVLNPWLQVKILRLLTRLAPLDPLLPKELLEDLLNLL  237

Query  252  QHANPSVVLAAVKVVFLHMKNIKQELSSNYLKKMAPPLVTLVSSAPE-VQYVALRNIDLL  310
            Q++N +V+      +      +    +   +      L  L+SS  E ++YVALRN++ +
Sbjct  238  QNSNNAVLYETANTI------VHLAPAPELIVLAVNALGRLLSSPDENLRYVALRNLNKI  291

Query  311  LQKQPD-ILNKELRVFFCKYNDPPYVKFQKLEIMVRIANDRNVDQLLAELREYALEV-DM  368
            + K+P  + + +L +F  K +D   ++ + L+++  + N+ NV +++ EL +Y  E+ D 
Sbjct  292  VMKEPKAVQHLDLIIFCLKTDDDISIRLRALDLLYALVNESNVKEIVKELLKYVHEIADP  351

Query  369  DFVRRAVRAIGQVAIKIESSCEKCVNTLLDLINTKVNYVVQEAIVVIKDIFRKYPG-YEG  427
            DF    VRAIG++A K  +  E  ++ LLDL++   +YVV E + VI+DI +  P   E 
Sbjct  352  DFKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREY  411

Query  428  IIPTLCKCIDELDEPNARAALIWIVGEYAEKISN---AGDILAGFVEGFNEEFSQTQLQI  484
            I+  LC+ +++++ P A AA +WI+GEY E I N     D+L   +E F  E ++ +   
Sbjct  412  ILEHLCELLEDIESPEALAAALWILGEYGELIPNGSSPPDLLRSILEVFVLESAKVRAAA  471

Query  485  LTAVVKLFLKRPEKAQG--LVQKVLQAATAENDNPDVRDRAYVYWRLLSNTS  534
            LTA+ KL L  PE+     ++Q +L  AT ++ + +VRDRA  Y RLLS   
Sbjct  472  LTALAKLGLTSPEETTQNLIIQLLLTLATQDSLDLEVRDRAVEYLRLLSLAD  523


>CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 
1.  The three non-SMC (structural maintenance of chromosomes) 
subunits of the mitotic condensation complex are Cnd1-3. 
The whole complex is essential for viability and the condensing 
of chromosomes in mitosis.
Length=162

 Score = 223 bits (571),  Expect = 1e-70, Method: Composition-based stats.
 Identities = 83/164 (51%), Positives = 113/164 (69%), Gaps = 3/164 (2%)

Query  104  LIRALAIRTMGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDLNPSLCLENG  163
            LIRALAIRTMGCIR   +V+Y+ EPL + L+DE PYVRKTAA+CVAKL  + P +    G
Sbjct  1    LIRALAIRTMGCIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKL--ILPDMVKVKG  58

Query  164  FLEMLQEMIGDPNPMVVANSVTALSEIHHAAPETRALQVTSNVLRKLLMALNECTEWGRV  223
            F+  L +++ DPNPMVVAN++ AL+EI    P      +  +++ KL  ALNEC+EWG++
Sbjct  59   FISELAKLLEDPNPMVVANALAALTEISEKDPNA-IYNLLPDIISKLSDALNECSEWGQI  117

Query  224  TILTTLAEYKTSDVTESEHICERVAPQFQHANPSVVLAAVKVVF  267
             IL  LA Y   D  E+E + E++ P+ QHAN +VVL A+KV+ 
Sbjct  118  YILDFLASYIPKDKQEAESLVEKLCPRLQHANSAVVLRAIKVIL  161



Lambda      K        H        a         alpha
   0.320    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 781585844


Query= TCONS_00026949

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00026950

Length=272


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00022156

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus. This fam...  159     7e-49
CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  64.1    3e-12


>CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus.  This family represents 
the N-terminal region of the eukaryotic epoxide hydrolase 
protein. Epoxide hydrolases (EC:3.3.2.3) comprise a group 
of functionally related enzymes that catalyze the addition 
of water to oxirane compounds (epoxides), thereby usually 
generating vicinal trans-diols. EHs have been found in all 
types of living organisms, including mammals, invertebrates, 
plants, fungi and bacteria. In animals, the major interest 
in EH is directed towards their detoxification capacity for 
epoxides since they are important safeguards against the cytotoxic 
and genotoxic potential of oxirane derivatives that 
are often reactive electrophiles because of the high tension 
of the three-membered ring system and the strong polarization 
of the C--O bonds. This is of significant relevance because 
epoxides are frequent intermediary metabolites which arise 
during the biotransformation of foreign compounds. This family 
is often found in conjunction with pfam00561.
Length=106

 Score = 159 bits (404),  Expect = 7e-49, Method: Composition-based stats.
 Identities = 53/109 (49%), Positives = 72/109 (66%), Gaps = 3/109 (3%)

Query  16   PAPFQVAVPDEQIAELKTLVKLAKIAPPTLENQQQDRRYGVTSDWLTTMREKWLNDYDWR  75
              PF + VPDE++ +L+  + L +  P  LE    D  YGV  D+L  + + W + YDWR
Sbjct  1    IRPFTIHVPDEELDDLRQRLALTRW-PDELEGD--DWWYGVPLDYLRELVDYWRDGYDWR  57

Query  76   VTEARINSFPQFTTRIEDISLHFAALFSEKRDAVPVILLHGWPGSFLEF  124
              EAR+NSFPQFTT I+ + +HF  + S K DA+P++LLHGWPGSFLEF
Sbjct  58   AQEARLNSFPQFTTEIDGLDIHFVHVRSNKPDAIPLLLLHGWPGSFLEF  106


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 64.1 bits (156),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 42/212 (20%), Positives = 75/212 (35%), Gaps = 22/212 (10%)

Query  110  PVILLHGWPGSFLEFLPMLQ-LFKEEYTPTTLPYHLIVPSLPGYGFSSSPPLDKEYKSHD  168
            PV+LLHG PGS   +  +   L ++ +        +I   L G+G SS P    +Y++ D
Sbjct  2    PVLLLHGLPGSSDLWRKLAPALARDGFR-------VIALDLRGFGKSSRPKAQDDYRTDD  54

Query  169  VARVMDQLMKGLGFGGGYVAQGGDIGSRISRVLAVDF-ESCK--VNFCTIPRPEACSDDS  225
            +A  ++ +++ LG     +  G  +G  I+   A  + +  K  V    +  P    +  
Sbjct  55   LAEDLEYILEALGLEKVNL-VGHSMGGLIALAYAAKYPDRVKALVLLGALDPPHELDEAD  113

Query  226  LSASE-----RRGVERLNAFLTTGLAYAIEQGTKPSTIGLVLSTNPMALLAWVGEKFLDW  280
                        G     A    G   A         + L+ +   +      G    D+
Sbjct  114  RFILALFPGFFDGFVADFAPNPLGRLVAKLLALLLLRLRLLKALPLLNKRFPSG----DY  169

Query  281  VDEPLPLETILDFVSLYWFTETYPRAIYFYRE  312
                  +   L F+   W TE   + +    E
Sbjct  170  ALAKSLVTGALLFIE-TWSTELRAKFLGRLDE  200



Lambda      K        H        a         alpha
   0.321    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00026951

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus. This fam...  158     5e-49
CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  64.4    2e-12


>CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus.  This family represents 
the N-terminal region of the eukaryotic epoxide hydrolase 
protein. Epoxide hydrolases (EC:3.3.2.3) comprise a group 
of functionally related enzymes that catalyze the addition 
of water to oxirane compounds (epoxides), thereby usually 
generating vicinal trans-diols. EHs have been found in all 
types of living organisms, including mammals, invertebrates, 
plants, fungi and bacteria. In animals, the major interest 
in EH is directed towards their detoxification capacity for 
epoxides since they are important safeguards against the cytotoxic 
and genotoxic potential of oxirane derivatives that 
are often reactive electrophiles because of the high tension 
of the three-membered ring system and the strong polarization 
of the C--O bonds. This is of significant relevance because 
epoxides are frequent intermediary metabolites which arise 
during the biotransformation of foreign compounds. This family 
is often found in conjunction with pfam00561.
Length=106

 Score = 158 bits (403),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 53/109 (49%), Positives = 72/109 (66%), Gaps = 3/109 (3%)

Query  16   PAPFQVAVPDEQIAELKTLVKLAKIAPPTLENQQQDRRYGVTSDWLTTMREKWLNDYDWR  75
              PF + VPDE++ +L+  + L +  P  LE    D  YGV  D+L  + + W + YDWR
Sbjct  1    IRPFTIHVPDEELDDLRQRLALTRW-PDELEGD--DWWYGVPLDYLRELVDYWRDGYDWR  57

Query  76   VTEARINSFPQFTTRIEDISLHFAALFSEKRDAVPVILLHGWPGSFLEF  124
              EAR+NSFPQFTT I+ + +HF  + S K DA+P++LLHGWPGSFLEF
Sbjct  58   AQEARLNSFPQFTTEIDGLDIHFVHVRSNKPDAIPLLLLHGWPGSFLEF  106


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 64.4 bits (157),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 42/214 (20%), Positives = 75/214 (35%), Gaps = 22/214 (10%)

Query  110  PVILLHGWPGSFLEFLPMLQ-LFKEEYTPTTLPYHLIVPSLPGYGFSSSPPLDKEYKSHD  168
            PV+LLHG PGS   +  +   L ++ +        +I   L G+G SS P    +Y++ D
Sbjct  2    PVLLLHGLPGSSDLWRKLAPALARDGFR-------VIALDLRGFGKSSRPKAQDDYRTDD  54

Query  169  VARVMDQLMKGLGFGGGYVAQGGDIGSRISRVLAVDF-ESCK--VNFCTIPRPEACSDDS  225
            +A  ++ +++ LG     +  G  +G  I+   A  + +  K  V    +  P    +  
Sbjct  55   LAEDLEYILEALGLEKVNL-VGHSMGGLIALAYAAKYPDRVKALVLLGALDPPHELDEAD  113

Query  226  LSASE-----RRGVERLNAFLTTGLAYAIEQGTKPSTIGLVLSTNPMALLAWVGEKFLDW  280
                        G     A    G   A         + L+ +   +      G    D+
Sbjct  114  RFILALFPGFFDGFVADFAPNPLGRLVAKLLALLLLRLRLLKALPLLNKRFPSG----DY  169

Query  281  VDEPLPLETILDFVSLYWFTETYPRAIYFYREDF  314
                  +   L F+   W TE   + +    E  
Sbjct  170  ALAKSLVTGALLFIE-TWSTELRAKFLGRLDEPT  202



Lambda      K        H        a         alpha
   0.322    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00026952

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus. This fam...  161     7e-52
CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  63.7    8e-13


>CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus.  This family represents 
the N-terminal region of the eukaryotic epoxide hydrolase 
protein. Epoxide hydrolases (EC:3.3.2.3) comprise a group 
of functionally related enzymes that catalyze the addition 
of water to oxirane compounds (epoxides), thereby usually 
generating vicinal trans-diols. EHs have been found in all 
types of living organisms, including mammals, invertebrates, 
plants, fungi and bacteria. In animals, the major interest 
in EH is directed towards their detoxification capacity for 
epoxides since they are important safeguards against the cytotoxic 
and genotoxic potential of oxirane derivatives that 
are often reactive electrophiles because of the high tension 
of the three-membered ring system and the strong polarization 
of the C--O bonds. This is of significant relevance because 
epoxides are frequent intermediary metabolites which arise 
during the biotransformation of foreign compounds. This family 
is often found in conjunction with pfam00561.
Length=106

 Score = 161 bits (410),  Expect = 7e-52, Method: Composition-based stats.
 Identities = 53/109 (49%), Positives = 72/109 (66%), Gaps = 3/109 (3%)

Query  16   PAPFQVAVPDEQIAELKTLVKLAKIAPPTLENQQQDRRYGVTSDWLTTMREKWLNDYDWR  75
              PF + VPDE++ +L+  + L +  P  LE    D  YGV  D+L  + + W + YDWR
Sbjct  1    IRPFTIHVPDEELDDLRQRLALTRW-PDELEGD--DWWYGVPLDYLRELVDYWRDGYDWR  57

Query  76   VTEARINSFPQFTTRIEDISLHFAALFSEKRDAVPVILLHGWPGSFLEF  124
              EAR+NSFPQFTT I+ + +HF  + S K DA+P++LLHGWPGSFLEF
Sbjct  58   AQEARLNSFPQFTTEIDGLDIHFVHVRSNKPDAIPLLLLHGWPGSFLEF  106


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 63.7 bits (155),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 28/104 (27%), Positives = 50/104 (48%), Gaps = 10/104 (10%)

Query  110  PVILLHGWPGSFLEFLPMLQ-LFKEEYTPTTLPYHLIVPSLPGYGFSSSPPLDKEYKSHD  168
            PV+LLHG PGS   +  +   L ++ +        +I   L G+G SS P    +Y++ D
Sbjct  2    PVLLLHGLPGSSDLWRKLAPALARDGFR-------VIALDLRGFGKSSRPKAQDDYRTDD  54

Query  169  VARVMDQLMKGLGFGGGYVAQGGDIGSRISRVLAVDF-ESCKAA  211
            +A  ++ +++ LG     +  G  +G  I+   A  + +  KA 
Sbjct  55   LAEDLEYILEALGLEKVNL-VGHSMGGLIALAYAAKYPDRVKAL  97



Lambda      K        H        a         alpha
   0.320    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00026953

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  281     6e-91
CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex ...  202     6e-65


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 281 bits (720),  Expect = 6e-91, Method: Composition-based stats.
 Identities = 108/358 (30%), Positives = 189/358 (53%), Gaps = 14/358 (4%)

Query  1    MGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDLNPSLCLENGFLEMLQEMI  60
            + CIRV ++   +   ++K L D SPYVRK AA+ + KL+  +P L  +  F+  L+E++
Sbjct  103  LSCIRVPELARDLAPDIKKLLVDRSPYVRKKAALAILKLYRKSPDLVRD--FVPELKELL  160

Query  61   GDPNPMVVANSVTALSEIHHAAPETRALQVTSNVLRKLLMALNECTEWGRVTILTTLAEY  120
             D +P V + +V  L EI     +   L++   + R+L   L     W +V IL  L   
Sbjct  161  SDKDPGVQSAAVALLYEICK--NDRLYLKLLPLLFRRLCNLLGVLNPWLQVKILRLLTRL  218

Query  121  KTSDVTESEHICERVAPQFQHANPSVVLAAVKVVFLHMKNIKQELSSNYLKKMAPPLVTL  180
               D    + + E +    Q++N +V+      +      +    +   +      L  L
Sbjct  219  APLDPLLPKELLEDLLNLLQNSNNAVLYETANTI------VHLAPAPELIVLAVNALGRL  272

Query  181  VSSAPE-VQYVALRNIDLLLQKQPD-ILNKELRVFFCKYNDPPYVKFQKLEIMVRIANDR  238
            +SS  E ++YVALRN++ ++ K+P  + + +L +F  K +D   ++ + L+++  + N+ 
Sbjct  273  LSSPDENLRYVALRNLNKIVMKEPKAVQHLDLIIFCLKTDDDISIRLRALDLLYALVNES  332

Query  239  NVDQLLAELREYALEV-DMDFVRRAVRAIGQVAIKIESSCEKCVNTLLDLINTKVNYVVQ  297
            NV +++ EL +Y  E+ D DF    VRAIG++A K  +  E  ++ LLDL++   +YVV 
Sbjct  333  NVKEIVKELLKYVHEIADPDFKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSYVVD  392

Query  298  EAIVVIKDIFRKYPG-YEGIIPTLCKCIDELDEPNARAALIWIVGEYAEKISNAGDIL  354
            E + VI+DI +  P   E I+  LC+ +++++ P A AA +WI+GEY E I N     
Sbjct  393  EIVEVIRDIIQNVPELREYILEHLCELLEDIESPEALAAALWILGEYGELIPNGSSPP  450


>CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 
1.  The three non-SMC (structural maintenance of chromosomes) 
subunits of the mitotic condensation complex are Cnd1-3. 
The whole complex is essential for viability and the condensing 
of chromosomes in mitosis.
Length=162

 Score = 202 bits (516),  Expect = 6e-65, Method: Composition-based stats.
 Identities = 74/155 (48%), Positives = 104/155 (67%), Gaps = 3/155 (2%)

Query  1    MGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDLNPSLCLENGFLEMLQEMI  60
            MGCIR   +V+Y+ EPL + L+DE PYVRKTAA+CVAKL  + P +    GF+  L +++
Sbjct  10   MGCIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKL--ILPDMVKVKGFISELAKLL  67

Query  61   GDPNPMVVANSVTALSEIHHAAPETRALQVTSNVLRKLLMALNECTEWGRVTILTTLAEY  120
             DPNPMVVAN++ AL+EI    P      +  +++ KL  ALNEC+EWG++ IL  LA Y
Sbjct  68   EDPNPMVVANALAALTEISEKDPNA-IYNLLPDIISKLSDALNECSEWGQIYILDFLASY  126

Query  121  KTSDVTESEHICERVAPQFQHANPSVVLAAVKVVF  155
               D  E+E + E++ P+ QHAN +VVL A+KV+ 
Sbjct  127  IPKDKQEAESLVEKLCPRLQHANSAVVLRAIKVIL  161



Lambda      K        H        a         alpha
   0.322    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00022158

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  440     1e-149
CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex ...  223     1e-70 


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 440 bits (1133),  Expect = 1e-149, Method: Composition-based stats.
 Identities = 177/532 (33%), Positives = 290/532 (55%), Gaps = 21/532 (4%)

Query  14   RKGETFELRAGLVSQ--YAYERKEAIQKTIMAMTLGKDVSALFPDVLKNIATSDLEQKKL  71
             K    EL   L S      ++K A++K +  + LG+D+S LF +V+K +A+ D   K+L
Sbjct  2    EKRIQQELARILNSFRDDPRKKKNAVKKLLYLIMLGEDISFLFFEVVKLVASKDFTLKRL  61

Query  72   VYLYLMNYAKSHPDLCILAVNTFVQDSEDPNPLIRALAIRTMGCIRVDKMVDYMEEPLRK  131
             YLYLM  A+  PDL IL  N+  +D + PN LIR LA+RT+ CIRV ++   +   ++K
Sbjct  62   GYLYLMLLAEESPDLAILVTNSIQKDLQSPNQLIRGLALRTLSCIRVPELARDLAPDIKK  121

Query  132  TLRDESPYVRKTAAICVAKLFDLNPSLCLENGFLEMLQEMIGDPNPMVVANSVTALSEIH  191
             L D SPYVRK AA+ + KL+  +P L  +  F+  L+E++ D +P V + +V  L EI 
Sbjct  122  LLVDRSPYVRKKAALAILKLYRKSPDLVRD--FVPELKELLSDKDPGVQSAAVALLYEIC  179

Query  192  HAAPETRALQVTSNVLRKLLMALNECTEWGRVTILTTLAEYKTSDVTESEHICERVAPQF  251
                +   L++   + R+L   L     W +V IL  L      D    + + E +    
Sbjct  180  K--NDRLYLKLLPLLFRRLCNLLGVLNPWLQVKILRLLTRLAPLDPLLPKELLEDLLNLL  237

Query  252  QHANPSVVLAAVKVVFLHMKNIKQELSSNYLKKMAPPLVTLVSSAPE-VQYVALRNIDLL  310
            Q++N +V+      +      +    +   +      L  L+SS  E ++YVALRN++ +
Sbjct  238  QNSNNAVLYETANTI------VHLAPAPELIVLAVNALGRLLSSPDENLRYVALRNLNKI  291

Query  311  LQKQPD-ILNKELRVFFCKYNDPPYVKFQKLEIMVRIANDRNVDQLLAELREYALEV-DM  368
            + K+P  + + +L +F  K +D   ++ + L+++  + N+ NV +++ EL +Y  E+ D 
Sbjct  292  VMKEPKAVQHLDLIIFCLKTDDDISIRLRALDLLYALVNESNVKEIVKELLKYVHEIADP  351

Query  369  DFVRRAVRAIGQVAIKIESSCEKCVNTLLDLINTKVNYVVQEAIVVIKDIFRKYPG-YEG  427
            DF    VRAIG++A K  +  E  ++ LLDL++   +YVV E + VI+DI +  P   E 
Sbjct  352  DFKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREY  411

Query  428  IIPTLCKCIDELDEPNARAALIWIVGEYAEKISN---AGDILAGFVEGFNEEFSQTQLQI  484
            I+  LC+ +++++ P A AA +WI+GEY E I N     D+L   +E F  E ++ +   
Sbjct  412  ILEHLCELLEDIESPEALAAALWILGEYGELIPNGSSPPDLLRSILEVFVLESAKVRAAA  471

Query  485  LTAVVKLFLKRPEKAQG--LVQKVLQAATAENDNPDVRDRAYVYWRLLSNTS  534
            LTA+ KL L  PE+     ++Q +L  AT ++ + +VRDRA  Y RLLS   
Sbjct  472  LTALAKLGLTSPEETTQNLIIQLLLTLATQDSLDLEVRDRAVEYLRLLSLAD  523


>CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 
1.  The three non-SMC (structural maintenance of chromosomes) 
subunits of the mitotic condensation complex are Cnd1-3. 
The whole complex is essential for viability and the condensing 
of chromosomes in mitosis.
Length=162

 Score = 223 bits (571),  Expect = 1e-70, Method: Composition-based stats.
 Identities = 83/164 (51%), Positives = 113/164 (69%), Gaps = 3/164 (2%)

Query  104  LIRALAIRTMGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDLNPSLCLENG  163
            LIRALAIRTMGCIR   +V+Y+ EPL + L+DE PYVRKTAA+CVAKL  + P +    G
Sbjct  1    LIRALAIRTMGCIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKL--ILPDMVKVKG  58

Query  164  FLEMLQEMIGDPNPMVVANSVTALSEIHHAAPETRALQVTSNVLRKLLMALNECTEWGRV  223
            F+  L +++ DPNPMVVAN++ AL+EI    P      +  +++ KL  ALNEC+EWG++
Sbjct  59   FISELAKLLEDPNPMVVANALAALTEISEKDPNA-IYNLLPDIISKLSDALNECSEWGQI  117

Query  224  TILTTLAEYKTSDVTESEHICERVAPQFQHANPSVVLAAVKVVF  267
             IL  LA Y   D  E+E + E++ P+ QHAN +VVL A+KV+ 
Sbjct  118  YILDFLASYIPKDKQEAESLVEKLCPRLQHANSAVVLRAIKVIL  161



Lambda      K        H        a         alpha
   0.320    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 781585844


Query= TCONS_00026954

Length=491
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  393     5e-133
CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex ...  221     3e-71 


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 393 bits (1012),  Expect = 5e-133, Method: Composition-based stats.
 Identities = 150/459 (33%), Positives = 249/459 (54%), Gaps = 16/459 (3%)

Query  14   RKGETFELRAGLVSQ--YAYERKEAIQKTIMAMTLGKDVSALFPDVLKNIATSDLEQKKL  71
             K    EL   L S      ++K A++K +  + LG+D+S LF +V+K +A+ D   K+L
Sbjct  2    EKRIQQELARILNSFRDDPRKKKNAVKKLLYLIMLGEDISFLFFEVVKLVASKDFTLKRL  61

Query  72   VYLYLMNYAKSHPDLCILAVNTFVQDSEDPNPLIRALAIRTMGCIRVDKMVDYMEEPLRK  131
             YLYLM  A+  PDL IL  N+  +D + PN LIR LA+RT+ CIRV ++   +   ++K
Sbjct  62   GYLYLMLLAEESPDLAILVTNSIQKDLQSPNQLIRGLALRTLSCIRVPELARDLAPDIKK  121

Query  132  TLRDESPYVRKTAAICVAKLFDLNPSLCLENGFLEMLQEMIGDPNPMVVANSVTALSEIH  191
             L D SPYVRK AA+ + KL+  +P L  +  F+  L+E++ D +P V + +V  L EI 
Sbjct  122  LLVDRSPYVRKKAALAILKLYRKSPDLVRD--FVPELKELLSDKDPGVQSAAVALLYEIC  179

Query  192  HAAPETRALQVTSNVLRKLLMALNECTEWGRVTILTTLAEYKTSDVTESEHICERVAPQF  251
                +   L++   + R+L   L     W +V IL  L      D    + + E +    
Sbjct  180  K--NDRLYLKLLPLLFRRLCNLLGVLNPWLQVKILRLLTRLAPLDPLLPKELLEDLLNLL  237

Query  252  QHANPSVVLAAVKVVFLHMKNIKQELSSNYLKKMAPPLVTLVSSAPE-VQYVALRNIDLL  310
            Q++N +V+      +      +    +   +      L  L+SS  E ++YVALRN++ +
Sbjct  238  QNSNNAVLYETANTI------VHLAPAPELIVLAVNALGRLLSSPDENLRYVALRNLNKI  291

Query  311  LQKQPD-ILNKELRVFFCKYNDPPYVKFQKLEIMVRIANDRNVDQLLAELREYALEV-DM  368
            + K+P  + + +L +F  K +D   ++ + L+++  + N+ NV +++ EL +Y  E+ D 
Sbjct  292  VMKEPKAVQHLDLIIFCLKTDDDISIRLRALDLLYALVNESNVKEIVKELLKYVHEIADP  351

Query  369  DFVRRAVRAIGQVAIKIESSCEKCVNTLLDLINTKVNYVVQEAIVVIKDIFRKYPG-YEG  427
            DF    VRAIG++A K  +  E  ++ LLDL++   +YVV E + VI+DI +  P   E 
Sbjct  352  DFKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREY  411

Query  428  IIPTLCKCIDELDEPNARAALIWIVGEYAEKISNAGDIL  466
            I+  LC+ +++++ P A AA +WI+GEY E I N     
Sbjct  412  ILEHLCELLEDIESPEALAAALWILGEYGELIPNGSSPP  450


>CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 
1.  The three non-SMC (structural maintenance of chromosomes) 
subunits of the mitotic condensation complex are Cnd1-3. 
The whole complex is essential for viability and the condensing 
of chromosomes in mitosis.
Length=162

 Score = 221 bits (567),  Expect = 3e-71, Method: Composition-based stats.
 Identities = 83/164 (51%), Positives = 113/164 (69%), Gaps = 3/164 (2%)

Query  104  LIRALAIRTMGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDLNPSLCLENG  163
            LIRALAIRTMGCIR   +V+Y+ EPL + L+DE PYVRKTAA+CVAKL  + P +    G
Sbjct  1    LIRALAIRTMGCIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKL--ILPDMVKVKG  58

Query  164  FLEMLQEMIGDPNPMVVANSVTALSEIHHAAPETRALQVTSNVLRKLLMALNECTEWGRV  223
            F+  L +++ DPNPMVVAN++ AL+EI    P      +  +++ KL  ALNEC+EWG++
Sbjct  59   FISELAKLLEDPNPMVVANALAALTEISEKDPNA-IYNLLPDIISKLSDALNECSEWGQI  117

Query  224  TILTTLAEYKTSDVTESEHICERVAPQFQHANPSVVLAAVKVVF  267
             IL  LA Y   D  E+E + E++ P+ QHAN +VVL A+KV+ 
Sbjct  118  YILDFLASYIPKDKQEAESLVEKLCPRLQHANSAVVLRAIKVIL  161



Lambda      K        H        a         alpha
   0.322    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 605626400


Query= TCONS_00022159

Length=746
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  454     3e-153
CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex ...  228     2e-71 


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 454 bits (1170),  Expect = 3e-153, Method: Composition-based stats.
 Identities = 177/532 (33%), Positives = 290/532 (55%), Gaps = 21/532 (4%)

Query  14   RKGETFELRAGLVSQ--YAYERKEAIQKTIMAMTLGKDVSALFPDVLKNIATSDLEQKKL  71
             K    EL   L S      ++K A++K +  + LG+D+S LF +V+K +A+ D   K+L
Sbjct  2    EKRIQQELARILNSFRDDPRKKKNAVKKLLYLIMLGEDISFLFFEVVKLVASKDFTLKRL  61

Query  72   VYLYLMNYAKSHPDLCILAVNTFVQDSEDPNPLIRALAIRTMGCIRVDKMVDYMEEPLRK  131
             YLYLM  A+  PDL IL  N+  +D + PN LIR LA+RT+ CIRV ++   +   ++K
Sbjct  62   GYLYLMLLAEESPDLAILVTNSIQKDLQSPNQLIRGLALRTLSCIRVPELARDLAPDIKK  121

Query  132  TLRDESPYVRKTAAICVAKLFDLNPSLCLENGFLEMLQEMIGDPNPMVVANSVTALSEIH  191
             L D SPYVRK AA+ + KL+  +P L  +  F+  L+E++ D +P V + +V  L EI 
Sbjct  122  LLVDRSPYVRKKAALAILKLYRKSPDLVRD--FVPELKELLSDKDPGVQSAAVALLYEIC  179

Query  192  HAAPETRALQVTSNVLRKLLMALNECTEWGRVTILTTLAEYKTSDVTESEHICERVAPQF  251
                +   L++   + R+L   L     W +V IL  L      D    + + E +    
Sbjct  180  K--NDRLYLKLLPLLFRRLCNLLGVLNPWLQVKILRLLTRLAPLDPLLPKELLEDLLNLL  237

Query  252  QHANPSVVLAAVKVVFLHMKNIKQELSSNYLKKMAPPLVTLVSSAPE-VQYVALRNIDLL  310
            Q++N +V+      +      +    +   +      L  L+SS  E ++YVALRN++ +
Sbjct  238  QNSNNAVLYETANTI------VHLAPAPELIVLAVNALGRLLSSPDENLRYVALRNLNKI  291

Query  311  LQKQPD-ILNKELRVFFCKYNDPPYVKFQKLEIMVRIANDRNVDQLLAELREYALEV-DM  368
            + K+P  + + +L +F  K +D   ++ + L+++  + N+ NV +++ EL +Y  E+ D 
Sbjct  292  VMKEPKAVQHLDLIIFCLKTDDDISIRLRALDLLYALVNESNVKEIVKELLKYVHEIADP  351

Query  369  DFVRRAVRAIGQVAIKIESSCEKCVNTLLDLINTKVNYVVQEAIVVIKDIFRKYPG-YEG  427
            DF    VRAIG++A K  +  E  ++ LLDL++   +YVV E + VI+DI +  P   E 
Sbjct  352  DFKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREY  411

Query  428  IIPTLCKCIDELDEPNARAALIWIVGEYAEKISN---AGDILAGFVEGFNEEFSQTQLQI  484
            I+  LC+ +++++ P A AA +WI+GEY E I N     D+L   +E F  E ++ +   
Sbjct  412  ILEHLCELLEDIESPEALAAALWILGEYGELIPNGSSPPDLLRSILEVFVLESAKVRAAA  471

Query  485  LTAVVKLFLKRPEKAQG--LVQKVLQAATAENDNPDVRDRAYVYWRLLSNTS  534
            LTA+ KL L  PE+     ++Q +L  AT ++ + +VRDRA  Y RLLS   
Sbjct  472  LTALAKLGLTSPEETTQNLIIQLLLTLATQDSLDLEVRDRAVEYLRLLSLAD  523


>CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 
1.  The three non-SMC (structural maintenance of chromosomes) 
subunits of the mitotic condensation complex are Cnd1-3. 
The whole complex is essential for viability and the condensing 
of chromosomes in mitosis.
Length=162

 Score = 228 bits (584),  Expect = 2e-71, Method: Composition-based stats.
 Identities = 83/164 (51%), Positives = 113/164 (69%), Gaps = 3/164 (2%)

Query  104  LIRALAIRTMGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDLNPSLCLENG  163
            LIRALAIRTMGCIR   +V+Y+ EPL + L+DE PYVRKTAA+CVAKL  + P +    G
Sbjct  1    LIRALAIRTMGCIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKL--ILPDMVKVKG  58

Query  164  FLEMLQEMIGDPNPMVVANSVTALSEIHHAAPETRALQVTSNVLRKLLMALNECTEWGRV  223
            F+  L +++ DPNPMVVAN++ AL+EI    P      +  +++ KL  ALNEC+EWG++
Sbjct  59   FISELAKLLEDPNPMVVANALAALTEISEKDPNA-IYNLLPDIISKLSDALNECSEWGQI  117

Query  224  TILTTLAEYKTSDVTESEHICERVAPQFQHANPSVVLAAVKVVF  267
             IL  LA Y   D  E+E + E++ P+ QHAN +VVL A+KV+ 
Sbjct  118  YILDFLASYIPKDKQEAESLVEKLCPRLQHANSAVVLRAIKVIL  161



Lambda      K        H        a         alpha
   0.317    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 948759104


Query= TCONS_00026955

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  424     4e-144
CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex ...  222     1e-70 


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 424 bits (1093),  Expect = 4e-144, Method: Composition-based stats.
 Identities = 169/500 (34%), Positives = 277/500 (55%), Gaps = 19/500 (4%)

Query  3    MTLGKDVSALFPDVLKNIATSDLEQKKLVYLYLMNYAKSHPDLCILAVNTFVQDSEDPNP  62
            + LG+D+S LF +V+K +A+ D   K+L YLYLM  A+  PDL IL  N+  +D + PN 
Sbjct  34   IMLGEDISFLFFEVVKLVASKDFTLKRLGYLYLMLLAEESPDLAILVTNSIQKDLQSPNQ  93

Query  63   LIRALAIRTMGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDLNPSLCLENG  122
            LIR LA+RT+ CIRV ++   +   ++K L D SPYVRK AA+ + KL+  +P L  +  
Sbjct  94   LIRGLALRTLSCIRVPELARDLAPDIKKLLVDRSPYVRKKAALAILKLYRKSPDLVRD--  151

Query  123  FLEMLQEMIGDPNPMVVANSVTALSEIHHAAPETRALQVTSNVLRKLLMALNECTEWGRV  182
            F+  L+E++ D +P V + +V  L EI     +   L++   + R+L   L     W +V
Sbjct  152  FVPELKELLSDKDPGVQSAAVALLYEICK--NDRLYLKLLPLLFRRLCNLLGVLNPWLQV  209

Query  183  TILTTLAEYKTSDVTESEHICERVAPQFQHANPSVVLAAVKVVFLHMKNIKQELSSNYLK  242
             IL  L      D    + + E +    Q++N +V+      +      +    +   + 
Sbjct  210  KILRLLTRLAPLDPLLPKELLEDLLNLLQNSNNAVLYETANTI------VHLAPAPELIV  263

Query  243  KMAPPLVTLVSSAPE-VQYVALRNIDLLLQKQPD-ILNKELRVFFCKYNDPPYVKFQKLE  300
                 L  L+SS  E ++YVALRN++ ++ K+P  + + +L +F  K +D   ++ + L+
Sbjct  264  LAVNALGRLLSSPDENLRYVALRNLNKIVMKEPKAVQHLDLIIFCLKTDDDISIRLRALD  323

Query  301  IMVRIANDRNVDQLLAELREYALEV-DMDFVRRAVRAIGQVAIKIESSCEKCVNTLLDLI  359
            ++  + N+ NV +++ EL +Y  E+ D DF    VRAIG++A K  +  E  ++ LLDL+
Sbjct  324  LLYALVNESNVKEIVKELLKYVHEIADPDFKIELVRAIGRLAEKFPTDAEWYLDVLLDLL  383

Query  360  NTKVNYVVQEAIVVIKDIFRKYPG-YEGIIPTLCKCIDELDEPNARAALIWIVGEYAEKI  418
            +   +YVV E + VI+DI +  P   E I+  LC+ +++++ P A AA +WI+GEY E I
Sbjct  384  SLAGSYVVDEIVEVIRDIIQNVPELREYILEHLCELLEDIESPEALAAALWILGEYGELI  443

Query  419  SN---AGDILAGFVEGFNEEFSQTQLQILTAVVKLFLKRPEKAQG--LVQKVLQAATAEN  473
             N     D+L   +E F  E ++ +   LTA+ KL L  PE+     ++Q +L  AT ++
Sbjct  444  PNGSSPPDLLRSILEVFVLESAKVRAAALTALAKLGLTSPEETTQNLIIQLLLTLATQDS  503

Query  474  DNPDVRDRAYVYWRLLSNTS  493
             + +VRDRA  Y RLLS   
Sbjct  504  LDLEVRDRAVEYLRLLSLAD  523


>CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 
1.  The three non-SMC (structural maintenance of chromosomes) 
subunits of the mitotic condensation complex are Cnd1-3. 
The whole complex is essential for viability and the condensing 
of chromosomes in mitosis.
Length=162

 Score = 222 bits (569),  Expect = 1e-70, Method: Composition-based stats.
 Identities = 83/164 (51%), Positives = 113/164 (69%), Gaps = 3/164 (2%)

Query  63   LIRALAIRTMGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDLNPSLCLENG  122
            LIRALAIRTMGCIR   +V+Y+ EPL + L+DE PYVRKTAA+CVAKL  + P +    G
Sbjct  1    LIRALAIRTMGCIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKL--ILPDMVKVKG  58

Query  123  FLEMLQEMIGDPNPMVVANSVTALSEIHHAAPETRALQVTSNVLRKLLMALNECTEWGRV  182
            F+  L +++ DPNPMVVAN++ AL+EI    P      +  +++ KL  ALNEC+EWG++
Sbjct  59   FISELAKLLEDPNPMVVANALAALTEISEKDPNA-IYNLLPDIISKLSDALNECSEWGQI  117

Query  183  TILTTLAEYKTSDVTESEHICERVAPQFQHANPSVVLAAVKVVF  226
             IL  LA Y   D  E+E + E++ P+ QHAN +VVL A+KV+ 
Sbjct  118  YILDFLASYIPKDKQEAESLVEKLCPRLQHANSAVVLRAIKVIL  161



Lambda      K        H        a         alpha
   0.320    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 720314296


Query= TCONS_00026956

Length=746
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  454     3e-153
CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex ...  228     2e-71 


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 454 bits (1170),  Expect = 3e-153, Method: Composition-based stats.
 Identities = 177/532 (33%), Positives = 290/532 (55%), Gaps = 21/532 (4%)

Query  14   RKGETFELRAGLVSQ--YAYERKEAIQKTIMAMTLGKDVSALFPDVLKNIATSDLEQKKL  71
             K    EL   L S      ++K A++K +  + LG+D+S LF +V+K +A+ D   K+L
Sbjct  2    EKRIQQELARILNSFRDDPRKKKNAVKKLLYLIMLGEDISFLFFEVVKLVASKDFTLKRL  61

Query  72   VYLYLMNYAKSHPDLCILAVNTFVQDSEDPNPLIRALAIRTMGCIRVDKMVDYMEEPLRK  131
             YLYLM  A+  PDL IL  N+  +D + PN LIR LA+RT+ CIRV ++   +   ++K
Sbjct  62   GYLYLMLLAEESPDLAILVTNSIQKDLQSPNQLIRGLALRTLSCIRVPELARDLAPDIKK  121

Query  132  TLRDESPYVRKTAAICVAKLFDLNPSLCLENGFLEMLQEMIGDPNPMVVANSVTALSEIH  191
             L D SPYVRK AA+ + KL+  +P L  +  F+  L+E++ D +P V + +V  L EI 
Sbjct  122  LLVDRSPYVRKKAALAILKLYRKSPDLVRD--FVPELKELLSDKDPGVQSAAVALLYEIC  179

Query  192  HAAPETRALQVTSNVLRKLLMALNECTEWGRVTILTTLAEYKTSDVTESEHICERVAPQF  251
                +   L++   + R+L   L     W +V IL  L      D    + + E +    
Sbjct  180  K--NDRLYLKLLPLLFRRLCNLLGVLNPWLQVKILRLLTRLAPLDPLLPKELLEDLLNLL  237

Query  252  QHANPSVVLAAVKVVFLHMKNIKQELSSNYLKKMAPPLVTLVSSAPE-VQYVALRNIDLL  310
            Q++N +V+      +      +    +   +      L  L+SS  E ++YVALRN++ +
Sbjct  238  QNSNNAVLYETANTI------VHLAPAPELIVLAVNALGRLLSSPDENLRYVALRNLNKI  291

Query  311  LQKQPD-ILNKELRVFFCKYNDPPYVKFQKLEIMVRIANDRNVDQLLAELREYALEV-DM  368
            + K+P  + + +L +F  K +D   ++ + L+++  + N+ NV +++ EL +Y  E+ D 
Sbjct  292  VMKEPKAVQHLDLIIFCLKTDDDISIRLRALDLLYALVNESNVKEIVKELLKYVHEIADP  351

Query  369  DFVRRAVRAIGQVAIKIESSCEKCVNTLLDLINTKVNYVVQEAIVVIKDIFRKYPG-YEG  427
            DF    VRAIG++A K  +  E  ++ LLDL++   +YVV E + VI+DI +  P   E 
Sbjct  352  DFKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREY  411

Query  428  IIPTLCKCIDELDEPNARAALIWIVGEYAEKISN---AGDILAGFVEGFNEEFSQTQLQI  484
            I+  LC+ +++++ P A AA +WI+GEY E I N     D+L   +E F  E ++ +   
Sbjct  412  ILEHLCELLEDIESPEALAAALWILGEYGELIPNGSSPPDLLRSILEVFVLESAKVRAAA  471

Query  485  LTAVVKLFLKRPEKAQG--LVQKVLQAATAENDNPDVRDRAYVYWRLLSNTS  534
            LTA+ KL L  PE+     ++Q +L  AT ++ + +VRDRA  Y RLLS   
Sbjct  472  LTALAKLGLTSPEETTQNLIIQLLLTLATQDSLDLEVRDRAVEYLRLLSLAD  523


>CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 
1.  The three non-SMC (structural maintenance of chromosomes) 
subunits of the mitotic condensation complex are Cnd1-3. 
The whole complex is essential for viability and the condensing 
of chromosomes in mitosis.
Length=162

 Score = 228 bits (584),  Expect = 2e-71, Method: Composition-based stats.
 Identities = 83/164 (51%), Positives = 113/164 (69%), Gaps = 3/164 (2%)

Query  104  LIRALAIRTMGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDLNPSLCLENG  163
            LIRALAIRTMGCIR   +V+Y+ EPL + L+DE PYVRKTAA+CVAKL  + P +    G
Sbjct  1    LIRALAIRTMGCIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKL--ILPDMVKVKG  58

Query  164  FLEMLQEMIGDPNPMVVANSVTALSEIHHAAPETRALQVTSNVLRKLLMALNECTEWGRV  223
            F+  L +++ DPNPMVVAN++ AL+EI    P      +  +++ KL  ALNEC+EWG++
Sbjct  59   FISELAKLLEDPNPMVVANALAALTEISEKDPNA-IYNLLPDIISKLSDALNECSEWGQI  117

Query  224  TILTTLAEYKTSDVTESEHICERVAPQFQHANPSVVLAAVKVVF  267
             IL  LA Y   D  E+E + E++ P+ QHAN +VVL A+KV+ 
Sbjct  118  YILDFLASYIPKDKQEAESLVEKLCPRLQHANSAVVLRAIKVIL  161



Lambda      K        H        a         alpha
   0.317    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 948759104


Query= TCONS_00022160

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  239     1e-75
CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex ...  225     7e-75


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 239 bits (611),  Expect = 1e-75, Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 141/283 (50%), Gaps = 12/283 (4%)

Query  14   RKGETFELRAGLVSQ--YAYERKEAIQKTIMAMTLGKDVSALFPDVLKNIATSDLEQKKL  71
             K    EL   L S      ++K A++K +  + LG+D+S LF +V+K +A+ D   K+L
Sbjct  2    EKRIQQELARILNSFRDDPRKKKNAVKKLLYLIMLGEDISFLFFEVVKLVASKDFTLKRL  61

Query  72   VYLYLMNYAKSHPDLCILAVNTFVQDSEDPNPLIRALAIRTMGCIRVDKMVDYMEEPLRK  131
             YLYLM  A+  PDL IL  N+  +D + PN LIR LA+RT+ CIRV ++   +   ++K
Sbjct  62   GYLYLMLLAEESPDLAILVTNSIQKDLQSPNQLIRGLALRTLSCIRVPELARDLAPDIKK  121

Query  132  TLRDESPYVRKTAAICVAKLFDLNPSLCLENGFLEMLQEMIGDPNPMVVANSVTALSEIH  191
             L D SPYVRK AA+ + KL+  +P L  +  F+  L+E++ D +P V + +V  L EI 
Sbjct  122  LLVDRSPYVRKKAALAILKLYRKSPDLVRD--FVPELKELLSDKDPGVQSAAVALLYEIC  179

Query  192  HAAPETRALQVTSNVLRKLLMALNECTEWGRVTILTTLAEYKTSDVTESEHICERVAPQF  251
                +   L++   + R+L   L     W +V IL  L      D    + + E +    
Sbjct  180  K--NDRLYLKLLPLLFRRLCNLLGVLNPWLQVKILRLLTRLAPLDPLLPKELLEDLLNLL  237

Query  252  QHANPSVVLAAVKVVFLHMKNIKQELSSNYLKKMAPPLGISLE  294
            Q++N +V+      +      +    +   +      LG  L 
Sbjct  238  QNSNNAVLYETANTI------VHLAPAPELIVLAVNALGRLLS  274


>CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 
1.  The three non-SMC (structural maintenance of chromosomes) 
subunits of the mitotic condensation complex are Cnd1-3. 
The whole complex is essential for viability and the condensing 
of chromosomes in mitosis.
Length=162

 Score = 225 bits (575),  Expect = 7e-75, Method: Composition-based stats.
 Identities = 83/164 (51%), Positives = 113/164 (69%), Gaps = 3/164 (2%)

Query  104  LIRALAIRTMGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDLNPSLCLENG  163
            LIRALAIRTMGCIR   +V+Y+ EPL + L+DE PYVRKTAA+CVAKL  + P +    G
Sbjct  1    LIRALAIRTMGCIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKL--ILPDMVKVKG  58

Query  164  FLEMLQEMIGDPNPMVVANSVTALSEIHHAAPETRALQVTSNVLRKLLMALNECTEWGRV  223
            F+  L +++ DPNPMVVAN++ AL+EI    P      +  +++ KL  ALNEC+EWG++
Sbjct  59   FISELAKLLEDPNPMVVANALAALTEISEKDPNA-IYNLLPDIISKLSDALNECSEWGQI  117

Query  224  TILTTLAEYKTSDVTESEHICERVAPQFQHANPSVVLAAVKVVF  267
             IL  LA Y   D  E+E + E++ P+ QHAN +VVL A+KV+ 
Sbjct  118  YILDFLASYIPKDKQEAESLVEKLCPRLQHANSAVVLRAIKVIL  161



Lambda      K        H        a         alpha
   0.320    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00026957

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  177     5e-51


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 177 bits (451),  Expect = 5e-51, Method: Composition-based stats.
 Identities = 74/199 (37%), Positives = 116/199 (58%), Gaps = 7/199 (4%)

Query  1    MVRIANDRNVDQLLAELREYALEV-DMDFVRRAVRAIGQVAIKIESSCEKCVNTLLDLIN  59
            +  + N+ NV +++ EL +Y  E+ D DF    VRAIG++A K  +  E  ++ LLDL++
Sbjct  325  LYALVNESNVKEIVKELLKYVHEIADPDFKIELVRAIGRLAEKFPTDAEWYLDVLLDLLS  384

Query  60   TKVNYVVQEAIVVIKDIFRKYPG-YEGIIPTLCKCIDELDEPNARAALIWIVGEYAEKIS  118
               +YVV E + VI+DI +  P   E I+  LC+ +++++ P A AA +WI+GEY E I 
Sbjct  385  LAGSYVVDEIVEVIRDIIQNVPELREYILEHLCELLEDIESPEALAAALWILGEYGELIP  444

Query  119  N---AGDILAGFVEGFNEEFSQTQLQILTAVVKLFLKRPEKAQG--LVQKVLQAATAEND  173
            N     D+L   +E F  E ++ +   LTA+ KL L  PE+     ++Q +L  AT ++ 
Sbjct  445  NGSSPPDLLRSILEVFVLESAKVRAAALTALAKLGLTSPEETTQNLIIQLLLTLATQDSL  504

Query  174  NPDVRDRAYVYWRLLSNTS  192
            + +VRDRA  Y RLLS   
Sbjct  505  DLEVRDRAVEYLRLLSLAD  523



Lambda      K        H        a         alpha
   0.314    0.132    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00022161

Length=716
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  445     5e-150
CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex ...  227     2e-71 


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 445 bits (1146),  Expect = 5e-150, Method: Composition-based stats.
 Identities = 171/509 (34%), Positives = 282/509 (55%), Gaps = 19/509 (4%)

Query  5    EAIQKTIMAMTLGKDVSALFPDVLKNIATSDLEQKKLVYLYLMNYAKSHPDLCILAVNTF  64
             A++K +  + LG+D+S LF +V+K +A+ D   K+L YLYLM  A+  PDL IL  N+ 
Sbjct  25   NAVKKLLYLIMLGEDISFLFFEVVKLVASKDFTLKRLGYLYLMLLAEESPDLAILVTNSI  84

Query  65   VQDSEDPNPLIRALAIRTMGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDL  124
             +D + PN LIR LA+RT+ CIRV ++   +   ++K L D SPYVRK AA+ + KL+  
Sbjct  85   QKDLQSPNQLIRGLALRTLSCIRVPELARDLAPDIKKLLVDRSPYVRKKAALAILKLYRK  144

Query  125  NPSLCLENGFLEMLQEMIGDPNPMVVANSVTALSEIHHAAPETRALQVTSNVLRKLLMAL  184
            +P L  +  F+  L+E++ D +P V + +V  L EI     +   L++   + R+L   L
Sbjct  145  SPDLVRD--FVPELKELLSDKDPGVQSAAVALLYEICK--NDRLYLKLLPLLFRRLCNLL  200

Query  185  NECTEWGRVTILTTLAEYKTSDVTESEHICERVAPQFQHANPSVVLAAVKVVFLHMKNIK  244
                 W +V IL  L      D    + + E +    Q++N +V+      +      + 
Sbjct  201  GVLNPWLQVKILRLLTRLAPLDPLLPKELLEDLLNLLQNSNNAVLYETANTI------VH  254

Query  245  QELSSNYLKKMAPPLVTLVSSAPE-VQYVALRNIDLLLQKQPD-ILNKELRVFFCKYNDP  302
               +   +      L  L+SS  E ++YVALRN++ ++ K+P  + + +L +F  K +D 
Sbjct  255  LAPAPELIVLAVNALGRLLSSPDENLRYVALRNLNKIVMKEPKAVQHLDLIIFCLKTDDD  314

Query  303  PYVKFQKLEIMVRIANDRNVDQLLAELREYALEV-DMDFVRRAVRAIGQVAIKIESSCEK  361
              ++ + L+++  + N+ NV +++ EL +Y  E+ D DF    VRAIG++A K  +  E 
Sbjct  315  ISIRLRALDLLYALVNESNVKEIVKELLKYVHEIADPDFKIELVRAIGRLAEKFPTDAEW  374

Query  362  CVNTLLDLINTKVNYVVQEAIVVIKDIFRKYPG-YEGIIPTLCKCIDELDEPNARAALIW  420
             ++ LLDL++   +YVV E + VI+DI +  P   E I+  LC+ +++++ P A AA +W
Sbjct  375  YLDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREYILEHLCELLEDIESPEALAAALW  434

Query  421  IVGEYAEKISN---AGDILAGFVEGFNEEFSQTQLQILTAVVKLFLKRPEKAQG--LVQK  475
            I+GEY E I N     D+L   +E F  E ++ +   LTA+ KL L  PE+     ++Q 
Sbjct  435  ILGEYGELIPNGSSPPDLLRSILEVFVLESAKVRAAALTALAKLGLTSPEETTQNLIIQL  494

Query  476  VLQAATAENDNPDVRDRAYVYWRLLSNTS  504
            +L  AT ++ + +VRDRA  Y RLLS   
Sbjct  495  LLTLATQDSLDLEVRDRAVEYLRLLSLAD  523


>CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 
1.  The three non-SMC (structural maintenance of chromosomes) 
subunits of the mitotic condensation complex are Cnd1-3. 
The whole complex is essential for viability and the condensing 
of chromosomes in mitosis.
Length=162

 Score = 227 bits (582),  Expect = 2e-71, Method: Composition-based stats.
 Identities = 83/164 (51%), Positives = 113/164 (69%), Gaps = 3/164 (2%)

Query  74   LIRALAIRTMGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDLNPSLCLENG  133
            LIRALAIRTMGCIR   +V+Y+ EPL + L+DE PYVRKTAA+CVAKL  + P +    G
Sbjct  1    LIRALAIRTMGCIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKL--ILPDMVKVKG  58

Query  134  FLEMLQEMIGDPNPMVVANSVTALSEIHHAAPETRALQVTSNVLRKLLMALNECTEWGRV  193
            F+  L +++ DPNPMVVAN++ AL+EI    P      +  +++ KL  ALNEC+EWG++
Sbjct  59   FISELAKLLEDPNPMVVANALAALTEISEKDPNA-IYNLLPDIISKLSDALNECSEWGQI  117

Query  194  TILTTLAEYKTSDVTESEHICERVAPQFQHANPSVVLAAVKVVF  237
             IL  LA Y   D  E+E + E++ P+ QHAN +VVL A+KV+ 
Sbjct  118  YILDFLASYIPKDKQEAESLVEKLCPRLQHANSAVVLRAIKVIL  161



Lambda      K        H        a         alpha
   0.317    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905104544


Query= TCONS_00022162

Length=705
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  438     1e-147
CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex ...  228     1e-71 


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 438 bits (1130),  Expect = 1e-147, Method: Composition-based stats.
 Identities = 169/500 (34%), Positives = 277/500 (55%), Gaps = 19/500 (4%)

Query  3    MTLGKDVSALFPDVLKNIATSDLEQKKLVYLYLMNYAKSHPDLCILAVNTFVQDSEDPNP  62
            + LG+D+S LF +V+K +A+ D   K+L YLYLM  A+  PDL IL  N+  +D + PN 
Sbjct  34   IMLGEDISFLFFEVVKLVASKDFTLKRLGYLYLMLLAEESPDLAILVTNSIQKDLQSPNQ  93

Query  63   LIRALAIRTMGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDLNPSLCLENG  122
            LIR LA+RT+ CIRV ++   +   ++K L D SPYVRK AA+ + KL+  +P L  +  
Sbjct  94   LIRGLALRTLSCIRVPELARDLAPDIKKLLVDRSPYVRKKAALAILKLYRKSPDLVRD--  151

Query  123  FLEMLQEMIGDPNPMVVANSVTALSEIHHAAPETRALQVTSNVLRKLLMALNECTEWGRV  182
            F+  L+E++ D +P V + +V  L EI     +   L++   + R+L   L     W +V
Sbjct  152  FVPELKELLSDKDPGVQSAAVALLYEICK--NDRLYLKLLPLLFRRLCNLLGVLNPWLQV  209

Query  183  TILTTLAEYKTSDVTESEHICERVAPQFQHANPSVVLAAVKVVFLHMKNIKQELSSNYLK  242
             IL  L      D    + + E +    Q++N +V+      +      +    +   + 
Sbjct  210  KILRLLTRLAPLDPLLPKELLEDLLNLLQNSNNAVLYETANTI------VHLAPAPELIV  263

Query  243  KMAPPLVTLVSSAPE-VQYVALRNIDLLLQKQPD-ILNKELRVFFCKYNDPPYVKFQKLE  300
                 L  L+SS  E ++YVALRN++ ++ K+P  + + +L +F  K +D   ++ + L+
Sbjct  264  LAVNALGRLLSSPDENLRYVALRNLNKIVMKEPKAVQHLDLIIFCLKTDDDISIRLRALD  323

Query  301  IMVRIANDRNVDQLLAELREYALEV-DMDFVRRAVRAIGQVAIKIESSCEKCVNTLLDLI  359
            ++  + N+ NV +++ EL +Y  E+ D DF    VRAIG++A K  +  E  ++ LLDL+
Sbjct  324  LLYALVNESNVKEIVKELLKYVHEIADPDFKIELVRAIGRLAEKFPTDAEWYLDVLLDLL  383

Query  360  NTKVNYVVQEAIVVIKDIFRKYPG-YEGIIPTLCKCIDELDEPNARAALIWIVGEYAEKI  418
            +   +YVV E + VI+DI +  P   E I+  LC+ +++++ P A AA +WI+GEY E I
Sbjct  384  SLAGSYVVDEIVEVIRDIIQNVPELREYILEHLCELLEDIESPEALAAALWILGEYGELI  443

Query  419  SN---AGDILAGFVEGFNEEFSQTQLQILTAVVKLFLKRPEKAQG--LVQKVLQAATAEN  473
             N     D+L   +E F  E ++ +   LTA+ KL L  PE+     ++Q +L  AT ++
Sbjct  444  PNGSSPPDLLRSILEVFVLESAKVRAAALTALAKLGLTSPEETTQNLIIQLLLTLATQDS  503

Query  474  DNPDVRDRAYVYWRLLSNTS  493
             + +VRDRA  Y RLLS   
Sbjct  504  LDLEVRDRAVEYLRLLSLAD  523


>CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 
1.  The three non-SMC (structural maintenance of chromosomes) 
subunits of the mitotic condensation complex are Cnd1-3. 
The whole complex is essential for viability and the condensing 
of chromosomes in mitosis.
Length=162

 Score = 228 bits (583),  Expect = 1e-71, Method: Composition-based stats.
 Identities = 83/164 (51%), Positives = 113/164 (69%), Gaps = 3/164 (2%)

Query  63   LIRALAIRTMGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDLNPSLCLENG  122
            LIRALAIRTMGCIR   +V+Y+ EPL + L+DE PYVRKTAA+CVAKL  + P +    G
Sbjct  1    LIRALAIRTMGCIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKL--ILPDMVKVKG  58

Query  123  FLEMLQEMIGDPNPMVVANSVTALSEIHHAAPETRALQVTSNVLRKLLMALNECTEWGRV  182
            F+  L +++ DPNPMVVAN++ AL+EI    P      +  +++ KL  ALNEC+EWG++
Sbjct  59   FISELAKLLEDPNPMVVANALAALTEISEKDPNA-IYNLLPDIISKLSDALNECSEWGQI  117

Query  183  TILTTLAEYKTSDVTESEHICERVAPQFQHANPSVVLAAVKVVF  226
             IL  LA Y   D  E+E + E++ P+ QHAN +VVL A+KV+ 
Sbjct  118  YILDFLASYIPKDKQEAESLVEKLCPRLQHANSAVVLRAIKVIL  161



Lambda      K        H        a         alpha
   0.317    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 902571480


Query= TCONS_00026958

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  443     3e-150
CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex ...  225     6e-71 


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 443 bits (1141),  Expect = 3e-150, Method: Composition-based stats.
 Identities = 177/532 (33%), Positives = 290/532 (55%), Gaps = 21/532 (4%)

Query  14   RKGETFELRAGLVSQ--YAYERKEAIQKTIMAMTLGKDVSALFPDVLKNIATSDLEQKKL  71
             K    EL   L S      ++K A++K +  + LG+D+S LF +V+K +A+ D   K+L
Sbjct  2    EKRIQQELARILNSFRDDPRKKKNAVKKLLYLIMLGEDISFLFFEVVKLVASKDFTLKRL  61

Query  72   VYLYLMNYAKSHPDLCILAVNTFVQDSEDPNPLIRALAIRTMGCIRVDKMVDYMEEPLRK  131
             YLYLM  A+  PDL IL  N+  +D + PN LIR LA+RT+ CIRV ++   +   ++K
Sbjct  62   GYLYLMLLAEESPDLAILVTNSIQKDLQSPNQLIRGLALRTLSCIRVPELARDLAPDIKK  121

Query  132  TLRDESPYVRKTAAICVAKLFDLNPSLCLENGFLEMLQEMIGDPNPMVVANSVTALSEIH  191
             L D SPYVRK AA+ + KL+  +P L  +  F+  L+E++ D +P V + +V  L EI 
Sbjct  122  LLVDRSPYVRKKAALAILKLYRKSPDLVRD--FVPELKELLSDKDPGVQSAAVALLYEIC  179

Query  192  HAAPETRALQVTSNVLRKLLMALNECTEWGRVTILTTLAEYKTSDVTESEHICERVAPQF  251
                +   L++   + R+L   L     W +V IL  L      D    + + E +    
Sbjct  180  K--NDRLYLKLLPLLFRRLCNLLGVLNPWLQVKILRLLTRLAPLDPLLPKELLEDLLNLL  237

Query  252  QHANPSVVLAAVKVVFLHMKNIKQELSSNYLKKMAPPLVTLVSSAPE-VQYVALRNIDLL  310
            Q++N +V+      +      +    +   +      L  L+SS  E ++YVALRN++ +
Sbjct  238  QNSNNAVLYETANTI------VHLAPAPELIVLAVNALGRLLSSPDENLRYVALRNLNKI  291

Query  311  LQKQPD-ILNKELRVFFCKYNDPPYVKFQKLEIMVRIANDRNVDQLLAELREYALEV-DM  368
            + K+P  + + +L +F  K +D   ++ + L+++  + N+ NV +++ EL +Y  E+ D 
Sbjct  292  VMKEPKAVQHLDLIIFCLKTDDDISIRLRALDLLYALVNESNVKEIVKELLKYVHEIADP  351

Query  369  DFVRRAVRAIGQVAIKIESSCEKCVNTLLDLINTKVNYVVQEAIVVIKDIFRKYPG-YEG  427
            DF    VRAIG++A K  +  E  ++ LLDL++   +YVV E + VI+DI +  P   E 
Sbjct  352  DFKIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREY  411

Query  428  IIPTLCKCIDELDEPNARAALIWIVGEYAEKISN---AGDILAGFVEGFNEEFSQAQLQI  484
            I+  LC+ +++++ P A AA +WI+GEY E I N     D+L   +E F  E ++ +   
Sbjct  412  ILEHLCELLEDIESPEALAAALWILGEYGELIPNGSSPPDLLRSILEVFVLESAKVRAAA  471

Query  485  LTAVVKLFLKRPEKAQG--LVQKVLQAATAENDNPDVRDRAYVYWRLLSNTS  534
            LTA+ KL L  PE+     ++Q +L  AT ++ + +VRDRA  Y RLLS   
Sbjct  472  LTALAKLGLTSPEETTQNLIIQLLLTLATQDSLDLEVRDRAVEYLRLLSLAD  523


>CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 
1.  The three non-SMC (structural maintenance of chromosomes) 
subunits of the mitotic condensation complex are Cnd1-3. 
The whole complex is essential for viability and the condensing 
of chromosomes in mitosis.
Length=162

 Score = 225 bits (575),  Expect = 6e-71, Method: Composition-based stats.
 Identities = 83/164 (51%), Positives = 113/164 (69%), Gaps = 3/164 (2%)

Query  104  LIRALAIRTMGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDLNPSLCLENG  163
            LIRALAIRTMGCIR   +V+Y+ EPL + L+DE PYVRKTAA+CVAKL  + P +    G
Sbjct  1    LIRALAIRTMGCIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKL--ILPDMVKVKG  58

Query  164  FLEMLQEMIGDPNPMVVANSVTALSEIHHAAPETRALQVTSNVLRKLLMALNECTEWGRV  223
            F+  L +++ DPNPMVVAN++ AL+EI    P      +  +++ KL  ALNEC+EWG++
Sbjct  59   FISELAKLLEDPNPMVVANALAALTEISEKDPNA-IYNLLPDIISKLSDALNECSEWGQI  117

Query  224  TILTTLAEYKTSDVTESEHICERVAPQFQHANPSVVLAAVKVVF  267
             IL  LA Y   D  E+E + E++ P+ QHAN +VVL A+KV+ 
Sbjct  118  YILDFLASYIPKDKQEAESLVEKLCPRLQHANSAVVLRAIKVIL  161



Lambda      K        H        a         alpha
   0.319    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 817033660


Query= TCONS_00022163

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex ...  205     5e-69
CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  126     9e-35


>CDD:463677 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 
1.  The three non-SMC (structural maintenance of chromosomes) 
subunits of the mitotic condensation complex are Cnd1-3. 
The whole complex is essential for viability and the condensing 
of chromosomes in mitosis.
Length=162

 Score = 205 bits (525),  Expect = 5e-69, Method: Composition-based stats.
 Identities = 74/155 (48%), Positives = 104/155 (67%), Gaps = 3/155 (2%)

Query  1    MGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDLNPSLCLENGFLEMLQEMI  60
            MGCIR   +V+Y+ EPL + L+DE PYVRKTAA+CVAKL  + P +    GF+  L +++
Sbjct  10   MGCIRFPNLVEYLTEPLYRRLKDEDPYVRKTAAMCVAKL--ILPDMVKVKGFISELAKLL  67

Query  61   GDPNPMVVANSVTALSEIHHAAPETRALQVTSNVLRKLLMALNECTEWGRVTILTTLAEY  120
             DPNPMVVAN++ AL+EI    P      +  +++ KL  ALNEC+EWG++ IL  LA Y
Sbjct  68   EDPNPMVVANALAALTEISEKDPNA-IYNLLPDIISKLSDALNECSEWGQIYILDFLASY  126

Query  121  KTSDVTESEHICERVAPQFQHANPSVVLAAVKVVF  155
               D  E+E + E++ P+ QHAN +VVL A+KV+ 
Sbjct  127  IPKDKQEAESLVEKLCPRLQHANSAVVLRAIKVIL  161


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 126 bits (318),  Expect = 9e-35, Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 81/182 (45%), Gaps = 10/182 (5%)

Query  1    MGCIRVDKMVDYMEEPLRKTLRDESPYVRKTAAICVAKLFDLNPSLCLENGFLEMLQEMI  60
            + CIRV ++   +   ++K L D SPYVRK AA+ + KL+  +P L  +  F+  L+E++
Sbjct  103  LSCIRVPELARDLAPDIKKLLVDRSPYVRKKAALAILKLYRKSPDLVRD--FVPELKELL  160

Query  61   GDPNPMVVANSVTALSEIHHAAPETRALQVTSNVLRKLLMALNECTEWGRVTILTTLAEY  120
             D +P V + +V  L EI     +   L++   + R+L   L     W +V IL  L   
Sbjct  161  SDKDPGVQSAAVALLYEICK--NDRLYLKLLPLLFRRLCNLLGVLNPWLQVKILRLLTRL  218

Query  121  KTSDVTESEHICERVAPQFQHANPSVVLAAVKVVFLHMKNIKQELSSNYLKKMAPPLGIS  180
               D    + + E +    Q++N +V+      +      +    +   +      LG  
Sbjct  219  APLDPLLPKELLEDLLNLLQNSNNAVLYETANTI------VHLAPAPELIVLAVNALGRL  272

Query  181  LE  182
            L 
Sbjct  273  LS  274



Lambda      K        H        a         alpha
   0.319    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00026959

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  75.8    9e-16


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 75.8 bits (187),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 59/261 (23%), Positives = 89/261 (34%), Gaps = 52/261 (20%)

Query  31   RTPLVELDG-----KRNLYLLELFHGPTFAFKDVALQFLGNLFEYFLVRKNEGKEGKDRH  85
             TPLV L         ++YL      PT +FKD     L       L+R  EG+ GK   
Sbjct  7    PTPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNL-------LLRLKEGEGGK---  56

Query  86   HLTVIGATSGDTGSAAIYGLRGKKDVSIFILFPTGRVSPIQQAQMTTVLDANVHNLTVEG  145
              TV+ A+SG+ G A       +  + + I+ P    +P  +  +   L A V    V G
Sbjct  57   --TVVEASSGNHGRALAAAAA-RLGLKVTIVVPED--APPGKLLLMRALGAEVVL--VGG  109

Query  146  SFDDCQDIVKALFAD-------PDLNSTHNIAAVNSINWAR-ILAQITYYFYSYFSLTKT  197
             +D+     + L A+          ++  NI    +I     IL Q+             
Sbjct  110  DYDEAVAAARELAAEGPGAYYINQYDNPLNIEGYGTI--GLEILEQL-------------  154

Query  198  SAFSKDTKMRFVVPSGNFGDILAGWFAKRMGLPAEKLVIA-TNENDILDRFFRSGGQYTK  256
                 D     VVP G  G I       +   P  +++         L R   +G     
Sbjct  155  -GGDPDA---VVVPVGGGGLIAGIARGLKELGPDVRVIGVEPEGAPALARSLAAGRPVPV  210

Query  257  NT--TQAEGVKETHSPAMDIL  275
                T A+G+     P    L
Sbjct  211  PVADTIADGLGVGDEPGALAL  231



Lambda      K        H        a         alpha
   0.318    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00026960

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464335 pfam14821, Thr_synth_N, Threonine synthase N-terminus....  144     3e-42
CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  75.8    1e-15


>CDD:464335 pfam14821, Thr_synth_N, Threonine synthase N-terminus.  This 
domain is found at the N-terminus of many threonine synthase 
enzymes.
Length=79

 Score = 144 bits (365),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 60/80 (75%), Gaps = 1/80 (1%)

Query  8   KYLSTRGASYGLSFEDVVLKGLASDGGLFIPEEIPSLPAGWETEWRDLSFEDLAYRIMSL  67
           KY+STRG +  LSFED +LKGLA DGGL++PEEIP L A     WR LS+++LA+ ++SL
Sbjct  1   KYISTRGGAPPLSFEDALLKGLAPDGGLYVPEEIPQLSAEELASWRGLSYQELAFEVLSL  60

Query  68  YISPSEIPSEDLQDIIRRSY  87
           +I   +IP EDL+ +I R+Y
Sbjct  61  FIG-DDIPEEDLKALIERAY  79


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 75.8 bits (187),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 59/261 (23%), Positives = 89/261 (34%), Gaps = 52/261 (20%)

Query  95   RTPLVELDG-----KRNLYLLELFHGPTFAFKDVALQFLGNLFEYFLVRKNEGKEGKDRH  149
             TPLV L         ++YL      PT +FKD     L       L+R  EG+ GK   
Sbjct  7    PTPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNL-------LLRLKEGEGGK---  56

Query  150  HLTVIGATSGDTGSAAIYGLRGKKDVSIFILFPTGRVSPIQQAQMTTVLDANVHNLTVEG  209
              TV+ A+SG+ G A       +  + + I+ P    +P  +  +   L A V    V G
Sbjct  57   --TVVEASSGNHGRALAAAAA-RLGLKVTIVVPED--APPGKLLLMRALGAEVVL--VGG  109

Query  210  SFDDCQDIVKALFAD-------PDLNSTHNIAAVNSINWAR-ILAQITYYFYSYFSLTKT  261
             +D+     + L A+          ++  NI    +I     IL Q+             
Sbjct  110  DYDEAVAAARELAAEGPGAYYINQYDNPLNIEGYGTI--GLEILEQL-------------  154

Query  262  SAFSKDTKMRFVVPSGNFGDILAGWFAKRMGLPAEKLVIA-TNENDILDRFFRSGGQYTK  320
                 D     VVP G  G I       +   P  +++         L R   +G     
Sbjct  155  -GGDPDA---VVVPVGGGGLIAGIARGLKELGPDVRVIGVEPEGAPALARSLAAGRPVPV  210

Query  321  NT--TQAEGVKETHSPAMDIL  339
                T A+G+     P    L
Sbjct  211  PVADTIADGLGVGDEPGALAL  231



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00026961

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464335 pfam14821, Thr_synth_N, Threonine synthase N-terminus....  144     3e-42
CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  75.8    1e-15


>CDD:464335 pfam14821, Thr_synth_N, Threonine synthase N-terminus.  This 
domain is found at the N-terminus of many threonine synthase 
enzymes.
Length=79

 Score = 144 bits (365),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 60/80 (75%), Gaps = 1/80 (1%)

Query  8   KYLSTRGASYGLSFEDVVLKGLASDGGLFIPEEIPSLPAGWETEWRDLSFEDLAYRIMSL  67
           KY+STRG +  LSFED +LKGLA DGGL++PEEIP L A     WR LS+++LA+ ++SL
Sbjct  1   KYISTRGGAPPLSFEDALLKGLAPDGGLYVPEEIPQLSAEELASWRGLSYQELAFEVLSL  60

Query  68  YISPSEIPSEDLQDIIRRSY  87
           +I   +IP EDL+ +I R+Y
Sbjct  61  FIG-DDIPEEDLKALIERAY  79


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 75.8 bits (187),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 59/261 (23%), Positives = 89/261 (34%), Gaps = 52/261 (20%)

Query  95   RTPLVELDG-----KRNLYLLELFHGPTFAFKDVALQFLGNLFEYFLVRKNEGKEGKDRH  149
             TPLV L         ++YL      PT +FKD     L       L+R  EG+ GK   
Sbjct  7    PTPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNL-------LLRLKEGEGGK---  56

Query  150  HLTVIGATSGDTGSAAIYGLRGKKDVSIFILFPTGRVSPIQQAQMTTVLDANVHNLTVEG  209
              TV+ A+SG+ G A       +  + + I+ P    +P  +  +   L A V    V G
Sbjct  57   --TVVEASSGNHGRALAAAAA-RLGLKVTIVVPED--APPGKLLLMRALGAEVVL--VGG  109

Query  210  SFDDCQDIVKALFAD-------PDLNSTHNIAAVNSINWAR-ILAQITYYFYSYFSLTKT  261
             +D+     + L A+          ++  NI    +I     IL Q+             
Sbjct  110  DYDEAVAAARELAAEGPGAYYINQYDNPLNIEGYGTI--GLEILEQL-------------  154

Query  262  SAFSKDTKMRFVVPSGNFGDILAGWFAKRMGLPAEKLVIA-TNENDILDRFFRSGGQYTK  320
                 D     VVP G  G I       +   P  +++         L R   +G     
Sbjct  155  -GGDPDA---VVVPVGGGGLIAGIARGLKELGPDVRVIGVEPEGAPALARSLAAGRPVPV  210

Query  321  NT--TQAEGVKETHSPAMDIL  339
                T A+G+     P    L
Sbjct  211  PVADTIADGLGVGDEPGALAL  231



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0736    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00022164

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464335 pfam14821, Thr_synth_N, Threonine synthase N-terminus....  144     3e-42
CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  75.8    1e-15


>CDD:464335 pfam14821, Thr_synth_N, Threonine synthase N-terminus.  This 
domain is found at the N-terminus of many threonine synthase 
enzymes.
Length=79

 Score = 144 bits (365),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 60/80 (75%), Gaps = 1/80 (1%)

Query  8   KYLSTRGASYGLSFEDVVLKGLASDGGLFIPEEIPSLPAGWETEWRDLSFEDLAYRIMSL  67
           KY+STRG +  LSFED +LKGLA DGGL++PEEIP L A     WR LS+++LA+ ++SL
Sbjct  1   KYISTRGGAPPLSFEDALLKGLAPDGGLYVPEEIPQLSAEELASWRGLSYQELAFEVLSL  60

Query  68  YISPSEIPSEDLQDIIRRSY  87
           +I   +IP EDL+ +I R+Y
Sbjct  61  FIG-DDIPEEDLKALIERAY  79


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 75.8 bits (187),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 59/261 (23%), Positives = 89/261 (34%), Gaps = 52/261 (20%)

Query  95   RTPLVELDG-----KRNLYLLELFHGPTFAFKDVALQFLGNLFEYFLVRKNEGKEGKDRH  149
             TPLV L         ++YL      PT +FKD     L       L+R  EG+ GK   
Sbjct  7    PTPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNL-------LLRLKEGEGGK---  56

Query  150  HLTVIGATSGDTGSAAIYGLRGKKDVSIFILFPTGRVSPIQQAQMTTVLDANVHNLTVEG  209
              TV+ A+SG+ G A       +  + + I+ P    +P  +  +   L A V    V G
Sbjct  57   --TVVEASSGNHGRALAAAAA-RLGLKVTIVVPED--APPGKLLLMRALGAEVVL--VGG  109

Query  210  SFDDCQDIVKALFAD-------PDLNSTHNIAAVNSINWAR-ILAQITYYFYSYFSLTKT  261
             +D+     + L A+          ++  NI    +I     IL Q+             
Sbjct  110  DYDEAVAAARELAAEGPGAYYINQYDNPLNIEGYGTI--GLEILEQL-------------  154

Query  262  SAFSKDTKMRFVVPSGNFGDILAGWFAKRMGLPAEKLVIA-TNENDILDRFFRSGGQYTK  320
                 D     VVP G  G I       +   P  +++         L R   +G     
Sbjct  155  -GGDPDA---VVVPVGGGGLIAGIARGLKELGPDVRVIGVEPEGAPALARSLAAGRPVPV  210

Query  321  NT--TQAEGVKETHSPAMDIL  339
                T A+G+     P    L
Sbjct  211  PVADTIADGLGVGDEPGALAL  231



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00022165

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464335 pfam14821, Thr_synth_N, Threonine synthase N-terminus....  144     3e-42
CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  75.8    1e-15


>CDD:464335 pfam14821, Thr_synth_N, Threonine synthase N-terminus.  This 
domain is found at the N-terminus of many threonine synthase 
enzymes.
Length=79

 Score = 144 bits (365),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 60/80 (75%), Gaps = 1/80 (1%)

Query  8   KYLSTRGASYGLSFEDVVLKGLASDGGLFIPEEIPSLPAGWETEWRDLSFEDLAYRIMSL  67
           KY+STRG +  LSFED +LKGLA DGGL++PEEIP L A     WR LS+++LA+ ++SL
Sbjct  1   KYISTRGGAPPLSFEDALLKGLAPDGGLYVPEEIPQLSAEELASWRGLSYQELAFEVLSL  60

Query  68  YISPSEIPSEDLQDIIRRSY  87
           +I   +IP EDL+ +I R+Y
Sbjct  61  FIG-DDIPEEDLKALIERAY  79


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 75.8 bits (187),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 59/261 (23%), Positives = 89/261 (34%), Gaps = 52/261 (20%)

Query  95   RTPLVELDG-----KRNLYLLELFHGPTFAFKDVALQFLGNLFEYFLVRKNEGKEGKDRH  149
             TPLV L         ++YL      PT +FKD     L       L+R  EG+ GK   
Sbjct  7    PTPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNL-------LLRLKEGEGGK---  56

Query  150  HLTVIGATSGDTGSAAIYGLRGKKDVSIFILFPTGRVSPIQQAQMTTVLDANVHNLTVEG  209
              TV+ A+SG+ G A       +  + + I+ P    +P  +  +   L A V    V G
Sbjct  57   --TVVEASSGNHGRALAAAAA-RLGLKVTIVVPED--APPGKLLLMRALGAEVVL--VGG  109

Query  210  SFDDCQDIVKALFAD-------PDLNSTHNIAAVNSINWAR-ILAQITYYFYSYFSLTKT  261
             +D+     + L A+          ++  NI    +I     IL Q+             
Sbjct  110  DYDEAVAAARELAAEGPGAYYINQYDNPLNIEGYGTI--GLEILEQL-------------  154

Query  262  SAFSKDTKMRFVVPSGNFGDILAGWFAKRMGLPAEKLVIA-TNENDILDRFFRSGGQYTK  320
                 D     VVP G  G I       +   P  +++         L R   +G     
Sbjct  155  -GGDPDA---VVVPVGGGGLIAGIARGLKELGPDVRVIGVEPEGAPALARSLAAGRPVPV  210

Query  321  NT--TQAEGVKETHSPAMDIL  339
                T A+G+     P    L
Sbjct  211  PVADTIADGLGVGDEPGALAL  231



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00022166

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  76.6    5e-16


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 76.6 bits (189),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 59/261 (23%), Positives = 89/261 (34%), Gaps = 52/261 (20%)

Query  65   RTPLVELDG-----KRNLYLLELFHGPTFAFKDVALQFLGNLFEYFLVRKNEGKEGKDRH  119
             TPLV L         ++YL      PT +FKD     L       L+R  EG+ GK   
Sbjct  7    PTPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNL-------LLRLKEGEGGK---  56

Query  120  HLTVIGATSGDTGSAAIYGLRGKKDVSIFILFPTGRVSPIQQAQMTTVLDANVHNLTVEG  179
              TV+ A+SG+ G A       +  + + I+ P    +P  +  +   L A V    V G
Sbjct  57   --TVVEASSGNHGRALAAAAA-RLGLKVTIVVPED--APPGKLLLMRALGAEVVL--VGG  109

Query  180  SFDDCQDIVKALFAD-------PDLNSTHNIAAVNSINWAR-ILAQITYYFYSYFSLTKT  231
             +D+     + L A+          ++  NI    +I     IL Q+             
Sbjct  110  DYDEAVAAARELAAEGPGAYYINQYDNPLNIEGYGTI--GLEILEQL-------------  154

Query  232  SAFSKDTKMRFVVPSGNFGDILAGWFAKRMGLPAEKLVIA-TNENDILDRFFRSGGQYTK  290
                 D     VVP G  G I       +   P  +++         L R   +G     
Sbjct  155  -GGDPDA---VVVPVGGGGLIAGIARGLKELGPDVRVIGVEPEGAPALARSLAAGRPVPV  210

Query  291  NT--TQAEGVKETHSPAMDIL  309
                T A+G+     P    L
Sbjct  211  PVADTIADGLGVGDEPGALAL  231



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00026962

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00022168

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00022167

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00022169

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460377 pfam01896, DNA_primase_S, DNA primase small subunit. D...  143     6e-41


>CDD:460377 pfam01896, DNA_primase_S, DNA primase small subunit.  DNA primase 
synthesizes the RNA primers for the Okazaki fragments in 
lagging strand DNA synthesis. DNA primase is a heterodimer 
of large and small subunits. This family also includes baculovirus 
late expression factor 1 or LEF-1 proteins. Baculovirus 
LEF-1 is a DNA primase enzyme. The family also contains 
many bacterial DNA primases.
Length=158

 Score = 143 bits (361),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 81/230 (35%), Positives = 102/230 (44%), Gaps = 72/230 (31%)

Query  191  FDIDLTDYDDIRSCCTKANICRKCWTFVTMAMKVVDTALREDFGFEHILWVYSGRRGAHA  250
            FDID+ DYDD R     A++C KCW FV +A+K++D  LREDFGF   LWV+SGRRG H 
Sbjct  1    FDIDMDDYDDPRI----ADVCEKCWRFVEVAVKLLDELLREDFGFPDTLWVFSGRRGFHV  56

Query  251  WVCDARARCLPDDRRRAIAGYLDVVRGGSQSGKRVNIKRPLHPHMSRSLEILKPFFAQTT  310
            WV D  AR L D+ R AIA YL++     Q                              
Sbjct  57   WVPDKDARFLTDEERAAIANYLNLHGTLDQLIV---------------------------  89

Query  311  LIDQDTFASSEQAERLLSLLPDKTLNDALRKKWDSSPGRSSTNKWADIDALAKTGKSSTL  370
                      E  ++LL  LPDK+L + LRKKW                           
Sbjct  90   TEKDLFNDFDELIKKLLDRLPDKSLGERLRKKW---------------------------  122

Query  371  NPTTLRDAKQDIVLEYTYPRLDAEVSKKMIHLLKSPFVIHPGTGRVCVPI  420
                          +Y YPR+D  V+K + HLLK+PF IH  TG V  P+
Sbjct  123  --------------KYLYPRIDENVTKGIRHLLKAPFSIHGKTGNVSAPV  158



Lambda      K        H        a         alpha
   0.316    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 652562446


Query= TCONS_00022170

Length=658
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459970 pfam00867, XPG_I, XPG I-region                             104     9e-28
CDD:395609 pfam00752, XPG_N, XPG N-terminal domain                    89.7    3e-22


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 104 bits (263),  Expect = 9e-28, Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 48/86 (56%), Gaps = 1/86 (1%)

Query  142  VQYVVAPYEADAQLVYLERQGIINGIISEDSDLLVFGAKRLLSKLDQHGDCIEIDRADFA  201
            + YVVAP EA+AQ  YL++ G+++ +ISEDSD+L+FGA RLL  L            +  
Sbjct  2    IPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEEI  61

Query  202  ACREV-NLIGWTDADFRRMCILSGCD  226
               ++   +G T      + IL GCD
Sbjct  62   DLEKILKELGLTREQLIDLAILLGCD  87


>CDD:395609 pfam00752, XPG_N, XPG N-terminal domain.  
Length=100

 Score = 89.7 bits (223),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 50/97 (52%), Gaps = 2/97 (2%)

Query  2   GIKGLHGLLKSIQ--KPCHVKKFKGQTLGVDAYGWLHRGTVACAVDLVLDRPTTKHVEFV  59
           GIKGL  +LK +   +P  ++  +G+TL +DA  WL++   A    L      T H+   
Sbjct  1   GIKGLLPILKPVALIRPVDIEALEGKTLAIDASIWLYQFLKAVRDQLGNALQNTSHLMGF  60

Query  60  LNRVRMLLYFGVTPYLVFDGDNLPSKSGTESERLQKR  96
            +R+  L  FG+ P  VFDG   P K+ T  +R  +R
Sbjct  61  FSRLCRLKDFGIKPIFVFDGGPPPLKAETLQKRSARR  97



Lambda      K        H        a         alpha
   0.316    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 833256350


Query= TCONS_00026963

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459970 pfam00867, XPG_I, XPG I-region                             104     8e-28


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 104 bits (263),  Expect = 8e-28, Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 48/86 (56%), Gaps = 1/86 (1%)

Query  78   VQYVVAPYEADAQLVYLERQGIINGIISEDSDLLVFGAKRLLSKLDQHGDCIEIDRADFA  137
            + YVVAP EA+AQ  YL++ G+++ +ISEDSD+L+FGA RLL  L            +  
Sbjct  2    IPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEEI  61

Query  138  ACREV-NLIGWTDADFRRMCILSGCD  162
               ++   +G T      + IL GCD
Sbjct  62   DLEKILKELGLTREQLIDLAILLGCD  87



Lambda      K        H        a         alpha
   0.315    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 750202856


Query= TCONS_00022171

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459970 pfam00867, XPG_I, XPG I-region                             104     8e-28


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 104 bits (263),  Expect = 8e-28, Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 48/86 (56%), Gaps = 1/86 (1%)

Query  78   VQYVVAPYEADAQLVYLERQGIINGIISEDSDLLVFGAKRLLSKLDQHGDCIEIDRADFA  137
            + YVVAP EA+AQ  YL++ G+++ +ISEDSD+L+FGA RLL  L            +  
Sbjct  2    IPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEEI  61

Query  138  ACREV-NLIGWTDADFRRMCILSGCD  162
               ++   +G T      + IL GCD
Sbjct  62   DLEKILKELGLTREQLIDLAILLGCD  87



Lambda      K        H        a         alpha
   0.315    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 750202856


Query= TCONS_00026964

Length=663
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459970 pfam00867, XPG_I, XPG I-region                             104     9e-28
CDD:395609 pfam00752, XPG_N, XPG N-terminal domain                    83.9    3e-20


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 104 bits (263),  Expect = 9e-28, Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 48/86 (56%), Gaps = 1/86 (1%)

Query  147  VQYVVAPYEADAQLVYLERQGIINGIISEDSDLLVFGAKRLLSKLDQHGDCIEIDRADFA  206
            + YVVAP EA+AQ  YL++ G+++ +ISEDSD+L+FGA RLL  L            +  
Sbjct  2    IPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEEI  61

Query  207  ACREV-NLIGWTDADFRRMCILSGCD  231
               ++   +G T      + IL GCD
Sbjct  62   DLEKILKELGLTREQLIDLAILLGCD  87


>CDD:395609 pfam00752, XPG_N, XPG N-terminal domain.  
Length=100

 Score = 83.9 bits (208),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 30/97 (31%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query  10   GLHGLLKSIQ-----KPCHVKKFKGQTLGVDAYGWLHRGTVACAVDLVLDRPTTKHVEFV  64
            G+ GLL  ++     +P  ++  +G+TL +DA  WL++   A    L      T H+   
Sbjct  1    GIKGLLPILKPVALIRPVDIEALEGKTLAIDASIWLYQFLKAVRDQLGNALQNTSHLMGF  60

Query  65   LNRVRMLLYFGVTPYLVFDGDNLPSKSGTESERLQKR  101
             +R+  L  FG+ P  VFDG   P K+ T  +R  +R
Sbjct  61   FSRLCRLKDFGIKPIFVFDGGPPPLKAETLQKRSARR  97



Lambda      K        H        a         alpha
   0.316    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 840630300


Query= TCONS_00026965

Length=658
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459970 pfam00867, XPG_I, XPG I-region                             104     9e-28
CDD:395609 pfam00752, XPG_N, XPG N-terminal domain                    89.7    3e-22


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 104 bits (263),  Expect = 9e-28, Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 48/86 (56%), Gaps = 1/86 (1%)

Query  142  VQYVVAPYEADAQLVYLERQGIINGIISEDSDLLVFGAKRLLSKLDQHGDCIEIDRADFA  201
            + YVVAP EA+AQ  YL++ G+++ +ISEDSD+L+FGA RLL  L            +  
Sbjct  2    IPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKKKSKVPVEEI  61

Query  202  ACREV-NLIGWTDADFRRMCILSGCD  226
               ++   +G T      + IL GCD
Sbjct  62   DLEKILKELGLTREQLIDLAILLGCD  87


>CDD:395609 pfam00752, XPG_N, XPG N-terminal domain.  
Length=100

 Score = 89.7 bits (223),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 50/97 (52%), Gaps = 2/97 (2%)

Query  2   GIKGLHGLLKSIQ--KPCHVKKFKGQTLGVDAYGWLHRGTVACAVDLVLDRPTTKHVEFV  59
           GIKGL  +LK +   +P  ++  +G+TL +DA  WL++   A    L      T H+   
Sbjct  1   GIKGLLPILKPVALIRPVDIEALEGKTLAIDASIWLYQFLKAVRDQLGNALQNTSHLMGF  60

Query  60  LNRVRMLLYFGVTPYLVFDGDNLPSKSGTESERLQKR  96
            +R+  L  FG+ P  VFDG   P K+ T  +R  +R
Sbjct  61  FSRLCRLKDFGIKPIFVFDGGPPPLKAETLQKRSARR  97



Lambda      K        H        a         alpha
   0.316    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 833256350


Query= TCONS_00022172

Length=148
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372065 pfam12351, Fig1, Ca2+ regulator and membrane fusion pr...  86.2    2e-22


>CDD:372065 pfam12351, Fig1, Ca2+ regulator and membrane fusion protein Fig1. 
 During the mating process of yeast cells, two Ca2+ influx 
pathways become activated. The resulting elevation of cytosolic 
free Ca2+ activates downstream signaling factors that 
promote long term survival of unmated cells. Fig1 is a regulator 
of the low affinity Ca2+ influx system (LACS), and is 
also required for efficient membrane fusion during yeast mating.
Length=181

 Score = 86.2 bits (214),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 41/84 (49%), Positives = 52/84 (62%), Gaps = 11/84 (13%)

Query  76   ATANIVGGAE-MEVRVGYFGICVQPAGGAYIC--NSNATALAEIVTV--------DQDPL  124
            ++AN  GG E + VRVGY GICV    G+ IC  N NATALA+ +T+          DPL
Sbjct  1    SSANSTGGLENLSVRVGYMGICVDQIPGSTICRKNINATALADDLTLNISNSSTSTPDPL  60

Query  125  NLIWVASTFKDAVVFPYLLIVAVI  148
            NL+ +A  F D VV PYLL+ A+I
Sbjct  61   NLVQLAKAFSDNVVHPYLLMAAII  84



Lambda      K        H        a         alpha
   0.328    0.143    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00022173

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372065 pfam12351, Fig1, Ca2+ regulator and membrane fusion pr...  197     4e-64


>CDD:372065 pfam12351, Fig1, Ca2+ regulator and membrane fusion protein Fig1. 
 During the mating process of yeast cells, two Ca2+ influx 
pathways become activated. The resulting elevation of cytosolic 
free Ca2+ activates downstream signaling factors that 
promote long term survival of unmated cells. Fig1 is a regulator 
of the low affinity Ca2+ influx system (LACS), and is 
also required for efficient membrane fusion during yeast mating.
Length=181

 Score = 197 bits (502),  Expect = 4e-64, Method: Composition-based stats.
 Identities = 93/190 (49%), Positives = 115/190 (61%), Gaps = 20/190 (11%)

Query  76   ATANIVGGAE-MEVRVGYFGICVQPAGGAYIC--NSNATALAEIVTV--------DQDPL  124
            ++AN  GG E + VRVGY GICV    G+ IC  N NATALA+ +T+          DPL
Sbjct  1    SSANSTGGLENLSVRVGYMGICVDQIPGSTICRKNINATALADDLTLNISNSSTSTPDPL  60

Query  125  NLIWVASTFKDAVVFPYLLIVAVILAFLCFILLATFPGWHEEINSTVSEQEVKPFPSRPV  184
            NL+ +A  F D VV PYLL+ A+IL  L F+LLATFPG          E  V PF SRPV
Sbjct  61   NLVQLAKAFSDNVVHPYLLMAAIILTLLGFLLLATFPGG---------EIPVLPFKSRPV  111

Query  185  SQAALALNFVASVFVLVSVLWQHTASVAATTIAQDMGNGSVKSGVGTSAMVLGWFGFVLL  244
            S+ AL L+F+  +   V  +WQH ASVAA+T+  D   G V S VG  AM LGWF F  L
Sbjct  112  SRVALVLSFLLVLLWGVGAMWQHVASVAASTMIPDASMGIVTSHVGGKAMALGWFSFAFL  171

Query  245  VVVTIGLLVM  254
            ++V +GL VM
Sbjct  172  LLVCLGLWVM  181



Lambda      K        H        a         alpha
   0.326    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00026966

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00026967

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371692 pfam11719, Drc1-Sld2, DNA replication and checkpoint p...  188     2e-57


>CDD:371692 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein. 
 Genome duplication is precisely regulated by cyclin-dependent 
kinases CDKs, which bring about the onset of S phase by 
activating replication origins and then prevent re-licensing 
of origins until mitosis is completed. The optimum sequence 
motif for CDK phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 
is found to have at least 11 potential phosphorylation sites. 
Drc1 is required for DNA synthesis and S-M replication 
checkpoint control. Drc1 associates with Cdc2 and is phosphorylated 
at the onset of S phase when Cdc2 is activated. Thus 
Cdc2 promotes DNA replication by phosphorylating Drc1 and regulating 
its association with Cut5. Sld2 and Sld3 represent 
the minimal set of S-CDK substrates required for DNA replication.
Length=391

 Score = 188 bits (480),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 148/312 (47%), Gaps = 76/312 (24%)

Query  17   RLGRTPASSGKKWMLSALFATPTTLRYSAMVEDGNHITERNLGPPTDPEGTARDVAGPET  76
               RTP SSGKK ML++LF+TPT                 NL  P  P   AR +   ET
Sbjct  147  SAERTPTSSGKKSMLNSLFSTPT-----------------NLYGPNSPLRIARKL-VFET  188

Query  77   PSFLRRSNSARYATSHSANPSLSPIAVRKPPQFVGKGLSALVQGLRDMEEERLEDDLDVL  136
            PSFLRR +  R       +  +SP  ++KP +F GKGLSA+V+ L+DMEE++L+D+LD L
Sbjct  189  PSFLRRIS--RTPPVDPNSEPVSPSPLKKPQRFFGKGLSAVVEELKDMEEDKLDDELDPL  246

Query  137  REIEAEQAALNVEVADSQAPAEIIGRHWKKKGQKRTTRRVRMKPVISKPASKPQSASDDE  196
            RE+EAE    +++  D QAP    GR  KKKGQKRTTRRV+MKPV           +++E
Sbjct  247  REMEAEMEQTSMDDDDDQAPEPEEGRPRKKKGQKRTTRRVKMKPVT----------TEEE  296

Query  197  NRHQAAGEEPAEPAAVPETQQPRALDAVFSEKQNEEFDDEDDQVSLHTISEPDLDSDPEY  256
                       E   +PETQ+                 D DD +S     E D DSD + 
Sbjct  297  GDSLEKKNIHDELDKLPETQR----------------TDLDDYLSEGEEDEEDEDSDSDE  340

Query  257  GEDIKPVTKSKSFSEKMKEAIGVAQPQPTEDPAKPSKPVIEAEETKKVRARKVNPEAHAN  316
              D +P  K KSF EKM+                              + +KV P    N
Sbjct  341  ESDSEPTLKKKSFKEKMQT-----------------------------KKKKVKP-VSNN  370

Query  317  YRSLKIRNKNSK  328
            +R LKI NK  +
Sbjct  371  FRRLKINNKKGR  382



Lambda      K        H        a         alpha
   0.307    0.126    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00026968

Length=308


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00022175

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371692 pfam11719, Drc1-Sld2, DNA replication and checkpoint p...  188     2e-57


>CDD:371692 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein. 
 Genome duplication is precisely regulated by cyclin-dependent 
kinases CDKs, which bring about the onset of S phase by 
activating replication origins and then prevent re-licensing 
of origins until mitosis is completed. The optimum sequence 
motif for CDK phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 
is found to have at least 11 potential phosphorylation sites. 
Drc1 is required for DNA synthesis and S-M replication 
checkpoint control. Drc1 associates with Cdc2 and is phosphorylated 
at the onset of S phase when Cdc2 is activated. Thus 
Cdc2 promotes DNA replication by phosphorylating Drc1 and regulating 
its association with Cut5. Sld2 and Sld3 represent 
the minimal set of S-CDK substrates required for DNA replication.
Length=391

 Score = 188 bits (480),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 148/312 (47%), Gaps = 76/312 (24%)

Query  17   RLGRTPASSGKKWMLSALFATPTTLRYSAMVEDGNHITERNLGPPTDPEGTARDVAGPET  76
               RTP SSGKK ML++LF+TPT                 NL  P  P   AR +   ET
Sbjct  147  SAERTPTSSGKKSMLNSLFSTPT-----------------NLYGPNSPLRIARKL-VFET  188

Query  77   PSFLRRSNSARYATSHSANPSLSPIAVRKPPQFVGKGLSALVQGLRDMEEERLEDDLDVL  136
            PSFLRR +  R       +  +SP  ++KP +F GKGLSA+V+ L+DMEE++L+D+LD L
Sbjct  189  PSFLRRIS--RTPPVDPNSEPVSPSPLKKPQRFFGKGLSAVVEELKDMEEDKLDDELDPL  246

Query  137  REIEAEQAALNVEVADSQAPAEIIGRHWKKKGQKRTTRRVRMKPVISKPASKPQSASDDE  196
            RE+EAE    +++  D QAP    GR  KKKGQKRTTRRV+MKPV           +++E
Sbjct  247  REMEAEMEQTSMDDDDDQAPEPEEGRPRKKKGQKRTTRRVKMKPVT----------TEEE  296

Query  197  NRHQAAGEEPAEPAAVPETQQPRALDAVFSEKQNEEFDDEDDQVSLHTISEPDLDSDPEY  256
                       E   +PETQ+                 D DD +S     E D DSD + 
Sbjct  297  GDSLEKKNIHDELDKLPETQR----------------TDLDDYLSEGEEDEEDEDSDSDE  340

Query  257  GEDIKPVTKSKSFSEKMKEAIGVAQPQPTEDPAKPSKPVIEAEETKKVRARKVNPEAHAN  316
              D +P  K KSF EKM+                              + +KV P    N
Sbjct  341  ESDSEPTLKKKSFKEKMQT-----------------------------KKKKVKP-VSNN  370

Query  317  YRSLKIRNKNSK  328
            +R LKI NK  +
Sbjct  371  FRRLKINNKKGR  382



Lambda      K        H        a         alpha
   0.307    0.126    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00022176

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371692 pfam11719, Drc1-Sld2, DNA replication and checkpoint p...  188     2e-57


>CDD:371692 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein. 
 Genome duplication is precisely regulated by cyclin-dependent 
kinases CDKs, which bring about the onset of S phase by 
activating replication origins and then prevent re-licensing 
of origins until mitosis is completed. The optimum sequence 
motif for CDK phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 
is found to have at least 11 potential phosphorylation sites. 
Drc1 is required for DNA synthesis and S-M replication 
checkpoint control. Drc1 associates with Cdc2 and is phosphorylated 
at the onset of S phase when Cdc2 is activated. Thus 
Cdc2 promotes DNA replication by phosphorylating Drc1 and regulating 
its association with Cut5. Sld2 and Sld3 represent 
the minimal set of S-CDK substrates required for DNA replication.
Length=391

 Score = 188 bits (480),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 148/312 (47%), Gaps = 76/312 (24%)

Query  17   RLGRTPASSGKKWMLSALFATPTTLRYSAMVEDGNHITERNLGPPTDPEGTARDVAGPET  76
               RTP SSGKK ML++LF+TPT                 NL  P  P   AR +   ET
Sbjct  147  SAERTPTSSGKKSMLNSLFSTPT-----------------NLYGPNSPLRIARKL-VFET  188

Query  77   PSFLRRSNSARYATSHSANPSLSPIAVRKPPQFVGKGLSALVQGLRDMEEERLEDDLDVL  136
            PSFLRR +  R       +  +SP  ++KP +F GKGLSA+V+ L+DMEE++L+D+LD L
Sbjct  189  PSFLRRIS--RTPPVDPNSEPVSPSPLKKPQRFFGKGLSAVVEELKDMEEDKLDDELDPL  246

Query  137  REIEAEQAALNVEVADSQAPAEIIGRHWKKKGQKRTTRRVRMKPVISKPASKPQSASDDE  196
            RE+EAE    +++  D QAP    GR  KKKGQKRTTRRV+MKPV           +++E
Sbjct  247  REMEAEMEQTSMDDDDDQAPEPEEGRPRKKKGQKRTTRRVKMKPVT----------TEEE  296

Query  197  NRHQAAGEEPAEPAAVPETQQPRALDAVFSEKQNEEFDDEDDQVSLHTISEPDLDSDPEY  256
                       E   +PETQ+                 D DD +S     E D DSD + 
Sbjct  297  GDSLEKKNIHDELDKLPETQR----------------TDLDDYLSEGEEDEEDEDSDSDE  340

Query  257  GEDIKPVTKSKSFSEKMKEAIGVAQPQPTEDPAKPSKPVIEAEETKKVRARKVNPEAHAN  316
              D +P  K KSF EKM+                              + +KV P    N
Sbjct  341  ESDSEPTLKKKSFKEKMQT-----------------------------KKKKVKP-VSNN  370

Query  317  YRSLKIRNKNSK  328
            +R LKI NK  +
Sbjct  371  FRRLKINNKKGR  382



Lambda      K        H        a         alpha
   0.307    0.126    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00022177

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462062 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like. This...  200     1e-65


>CDD:462062 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like.  This family 
contains a number of bacterial and eukaryotic proteins approximately 
400 residues long that resemble ferredoxin and appear 
to have sucrolytic activity.
Length=217

 Score = 200 bits (511),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 80/178 (45%), Positives = 99/178 (56%), Gaps = 15/178 (8%)

Query  52   LYGHIKRFDTHVLVATGKSDWVER-VTQEKGSLMEALDS--VKPRQGRMMISASNLRSPE  108
            L G  K +D HVLV TGK+DW    +  E GSL  AL      P  G +++SAS+L    
Sbjct  1    LIGTAKPYDRHVLVETGKTDWPSDILEDEPGSLAAALKKGGGGPPGGNILVSASSLPPDS  60

Query  109  DLETEKD-NKGNTVLILPSFTFVDCVKPEDVRELVDRYIDTPQDAGTSQSDSGLISRPCE  167
                E    +   VL+LP F  V  V P DVR+LVD Y+      GT      L SRPC 
Sbjct  61   SYRRELSAGEPTDVLLLPDFKLVPNVPPSDVRDLVDDYLLPELTTGT-----PLTSRPCP  115

Query  168  YDYVVLLCSHKRRDARCGITAPLIKKELERHLRPLDLYRDAYDERPGGVGIFFVSHVG  225
            +D ++L+CSH  RD RCGI  PL+ KE ER LR L       DERPGGV ++F+SHVG
Sbjct  116  HDALILVCSHGTRDKRCGILGPLLYKEFERELRDLG------DERPGGVRVWFISHVG  167



Lambda      K        H        a         alpha
   0.319    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00026970

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462062 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like. This...  231     3e-78


>CDD:462062 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like.  This family 
contains a number of bacterial and eukaryotic proteins approximately 
400 residues long that resemble ferredoxin and appear 
to have sucrolytic activity.
Length=217

 Score = 231 bits (591),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 86/182 (47%), Positives = 108/182 (59%), Gaps = 15/182 (8%)

Query  1    MMISASNLRSPEDLETEKD-NKGNTVLILPSFTFVDCVKPEDVRELVDRYIDTPQDAGTS  59
            +++SAS+L        E    +   VL+LP F  V  V P DVR+LVD Y+      GT 
Sbjct  49   ILVSASSLPPDSSYRRELSAGEPTDVLLLPDFKLVPNVPPSDVRDLVDDYLLPELTTGT-  107

Query  60   QSDSGLISRPCEYDYVVLLCSHKRRDARCGITAPLIKKELERHLRPLDLYRDAYDERPGG  119
                 L SRPC +D ++L+CSH  RD RCGI  PL+ KE ER LR L       DERPGG
Sbjct  108  ----PLTSRPCPHDALILVCSHGTRDKRCGILGPLLYKEFERELRDLG------DERPGG  157

Query  120  VGIFFVSHVGGHKFAANVMIYRK-KEQQMIWLARVRPEHCEGIVKYTLLQGKLVHPESQL  178
            V ++F+SHVGGHKFA NV+IY      Q IW  RV PEH EGIV+ T+L+GK++      
Sbjct  158  VRVWFISHVGGHKFAGNVIIYPPGDAGQGIWYGRVTPEHVEGIVEETILKGKVIKE--LY  215

Query  179  RG  180
            RG
Sbjct  216  RG  217



Lambda      K        H        a         alpha
   0.321    0.140    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00022178

Length=112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462062 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like. This...  58.5    3e-12


>CDD:462062 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like.  This family 
contains a number of bacterial and eukaryotic proteins approximately 
400 residues long that resemble ferredoxin and appear 
to have sucrolytic activity.
Length=217

 Score = 58.5 bits (142),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (8%)

Query  52  LYGHIKRFDTHVLVATGKSDWVER-VTQEKGSLMEALD---SVKPRQGVRIS  99
           L G  K +D HVLV TGK+DW    +  E GSL  AL       P   + +S
Sbjct  1   LIGTAKPYDRHVLVETGKTDWPSDILEDEPGSLAAALKKGGGGPPGGNILVS  52



Lambda      K        H        a         alpha
   0.317    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00022179

Length=289
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462062 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like. This...  287     9e-99


>CDD:462062 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like.  This family 
contains a number of bacterial and eukaryotic proteins approximately 
400 residues long that resemble ferredoxin and appear 
to have sucrolytic activity.
Length=217

 Score = 287 bits (736),  Expect = 9e-99, Method: Composition-based stats.
 Identities = 105/230 (46%), Positives = 130/230 (57%), Gaps = 16/230 (7%)

Query  52   LYGHIKRFDTHVLVATGKSDWVER-VTQEKGSLMEALDSVKPRQGSQRMMISASNLRSPE  110
            L G  K +D HVLV TGK+DW    +  E GSL  AL           +++SAS+L    
Sbjct  1    LIGTAKPYDRHVLVETGKTDWPSDILEDEPGSLAAALKKGGGGPPGGNILVSASSLPPDS  60

Query  111  DLETEKD-NKGNTVLILPSFTFVDCVKPEDVRELVDRYIDTPQDAGTSQSDSGLISRPCE  169
                E    +   VL+LP F  V  V P DVR+LVD Y+      GT      L SRPC 
Sbjct  61   SYRRELSAGEPTDVLLLPDFKLVPNVPPSDVRDLVDDYLLPELTTGT-----PLTSRPCP  115

Query  170  YDYVVLLCSHKRRDARCGITAPLIKKELERHLRPLDLYRDAYDERPGGVGIFFVSHVGGH  229
            +D ++L+CSH  RD RCGI  PL+ KE ER LR L       DERPGGV ++F+SHVGGH
Sbjct  116  HDALILVCSHGTRDKRCGILGPLLYKEFERELRDLG------DERPGGVRVWFISHVGGH  169

Query  230  KFAANVMIYRK-KEQQMIWLARVRPEHCEGIVKYTLLQGKLVHPESQLRG  278
            KFA NV+IY      Q IW  RV PEH EGIV+ T+L+GK++      RG
Sbjct  170  KFAGNVIIYPPGDAGQGIWYGRVTPEHVEGIVEETILKGKVIKE--LYRG  217



Lambda      K        H        a         alpha
   0.320    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 327287968


Query= TCONS_00026971

Length=432


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00022180

Length=570


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 714336584


Query= TCONS_00026972

Length=352


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00026973

Length=432


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00022181

Length=784


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0666    0.140     1.90     42.6     43.6 

Effective search space used: 1004054880


Query= TCONS_00026974

Length=570


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 714336584


Query= TCONS_00022182

Length=570


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 714336584


Query= TCONS_00022184

Length=800


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1027337312


Query= TCONS_00022183

Length=586


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 738247432


Query= TCONS_00022185

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00022187

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  107     2e-27


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 107 bits (270),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 81/322 (25%), Positives = 111/322 (34%), Gaps = 67/322 (21%)

Query  50   HDPNIIEYNDTFYLFMGGVH----IPISKASSLDGPWTRVGTVLDGPSIIEKQNRTRPWA  105
             DP+I+   D +YL          IPI  +  L   W  VG VL   S +  +     WA
Sbjct  11   PDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVN-WKLVGPVLVRRSQLSGRGSNASWA  69

Query  106  PTVVQHNGSFYCYYTISTPGSRNSSVGVATTDSLDSGKWTDHGALINTGSGKLSHIYPYN  165
            P +  H+G +Y YYT          + VAT DS D G W+D                  +
Sbjct  70   PDISYHDGKYYLYYTAV-----AHGIFVATADSPD-GPWSD-------------PGKLKS  110

Query  166  ESNAIDASFIVDNATGRPYLNYGSFWH-----GIFQVPLAGDLLSVEDAEHPRAVNLAYE  220
                ID S   D+  G+ YL +G +       GI+   L  D L +          L Y 
Sbjct  111  GGGGIDPSLFHDDD-GKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVGP----VTKLIYP  165

Query  221  PAE--KFKPIEGSWMSFREPYYYLWASHGKCCRFGDGQNAKDFPAKGQEYAIRVGRSTSV  278
                   K  EG  +  R  YYYL  + G                 G  YA+ V RS S 
Sbjct  166  GTRWVGGKVTEGPHLYKRNGYYYLTYAAGGT---------------GGPYAVGVARSRSP  210

Query  279  NGPFQDKDGKNLTDGGGTVVYASNHGVVYAPGGVGVLPANEKHPEILYYHYLNTSMGLKD  338
             GP++   G  +          S    +Y PG   ++   +    I+ YH      G   
Sbjct  211  LGPYEWHPGNPILTSR------SPENPIYGPGHASLVETPDGEWWIV-YHAGRPGDGGYG  263

Query  339  ND-----ARLGWSYLEYKDGWP  355
                     + W      DGWP
Sbjct  264  LGRETRIQPVEWR----ADGWP  281



Lambda      K        H        a         alpha
   0.317    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00022186

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  102     2e-25


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 102 bits (255),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 59/212 (28%), Positives = 79/212 (37%), Gaps = 36/212 (17%)

Query  50   HDPNIIEYNDTFYLFMGGVH----IPISKASSLDGPWTRVGTVLDGPSIIEKQNRTRPWA  105
             DP+I+   D +YL          IPI  +  L   W  VG VL   S +  +     WA
Sbjct  11   PDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVN-WKLVGPVLVRRSQLSGRGSNASWA  69

Query  106  PTVVQHNGSFYCYYTISTPGSRNSSVGVATTDSLDSGKWTDHGALINTGSGKLSHIYPYN  165
            P +  H+G +Y YYT          + VAT DS D G W+D                  +
Sbjct  70   PDISYHDGKYYLYYTAV-----AHGIFVATADSPD-GPWSD-------------PGKLKS  110

Query  166  ESNAIDASFIVDNATGRPYLNYGSFWH-----GIFQVPLAGDLLSVEDAEHPRAVNLAYE  220
                ID S   D+  G+ YL +G +       GI+   L  D L +     P    L Y 
Sbjct  111  GGGGIDPSLFHDDD-GKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVG---PVTK-LIYP  165

Query  221  PAE--KFKPIEGSWMSFREPYYYLWASHGKCC  250
                   K  EG  +  R  YYYL  + G   
Sbjct  166  GTRWVGGKVTEGPHLYKRNGYYYLTYAAGGTG  197



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00022188

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  102     2e-25


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 102 bits (255),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 59/212 (28%), Positives = 79/212 (37%), Gaps = 36/212 (17%)

Query  50   HDPNIIEYNDTFYLFMGGVH----IPISKASSLDGPWTRVGTVLDGPSIIEKQNRTRPWA  105
             DP+I+   D +YL          IPI  +  L   W  VG VL   S +  +     WA
Sbjct  11   PDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVN-WKLVGPVLVRRSQLSGRGSNASWA  69

Query  106  PTVVQHNGSFYCYYTISTPGSRNSSVGVATTDSLDSGKWTDHGALINTGSGKLSHIYPYN  165
            P +  H+G +Y YYT          + VAT DS D G W+D                  +
Sbjct  70   PDISYHDGKYYLYYTAV-----AHGIFVATADSPD-GPWSD-------------PGKLKS  110

Query  166  ESNAIDASFIVDNATGRPYLNYGSFWH-----GIFQVPLAGDLLSVEDAEHPRAVNLAYE  220
                ID S   D+  G+ YL +G +       GI+   L  D L +     P    L Y 
Sbjct  111  GGGGIDPSLFHDDD-GKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVG---PVTK-LIYP  165

Query  221  PAE--KFKPIEGSWMSFREPYYYLWASHGKCC  250
                   K  EG  +  R  YYYL  + G   
Sbjct  166  GTRWVGGKVTEGPHLYKRNGYYYLTYAAGGTG  197



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00022189

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  102     2e-25


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 102 bits (255),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 59/212 (28%), Positives = 79/212 (37%), Gaps = 36/212 (17%)

Query  50   HDPNIIEYNDTFYLFMGGVH----IPISKASSLDGPWTRVGTVLDGPSIIEKQNRTRPWA  105
             DP+I+   D +YL          IPI  +  L   W  VG VL   S +  +     WA
Sbjct  11   PDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVN-WKLVGPVLVRRSQLSGRGSNASWA  69

Query  106  PTVVQHNGSFYCYYTISTPGSRNSSVGVATTDSLDSGKWTDHGALINTGSGKLSHIYPYN  165
            P +  H+G +Y YYT          + VAT DS D G W+D                  +
Sbjct  70   PDISYHDGKYYLYYTAV-----AHGIFVATADSPD-GPWSD-------------PGKLKS  110

Query  166  ESNAIDASFIVDNATGRPYLNYGSFWH-----GIFQVPLAGDLLSVEDAEHPRAVNLAYE  220
                ID S   D+  G+ YL +G +       GI+   L  D L +     P    L Y 
Sbjct  111  GGGGIDPSLFHDDD-GKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVG---PVTK-LIYP  165

Query  221  PAE--KFKPIEGSWMSFREPYYYLWASHGKCC  250
                   K  EG  +  R  YYYL  + G   
Sbjct  166  GTRWVGGKVTEGPHLYKRNGYYYLTYAAGGTG  197



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00022193

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  102     1e-25


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 102 bits (257),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 59/212 (28%), Positives = 79/212 (37%), Gaps = 36/212 (17%)

Query  50   HDPNIIEYNDTFYLFMGGVH----IPISKASSLDGPWTRVGTVLDGPSIIEKQNRTRPWA  105
             DP+I+   D +YL          IPI  +  L   W  VG VL   S +  +     WA
Sbjct  11   PDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVN-WKLVGPVLVRRSQLSGRGSNASWA  69

Query  106  PTVVQHNGSFYCYYTISTPGSRNSSVGVATTDSLDSGKWTDHGALINTGSGKLSHIYPYN  165
            P +  H+G +Y YYT          + VAT DS D G W+D                  +
Sbjct  70   PDISYHDGKYYLYYTAV-----AHGIFVATADSPD-GPWSD-------------PGKLKS  110

Query  166  ESNAIDASFIVDNATGRPYLNYGSFWH-----GIFQVPLAGDLLSVEDAEHPRAVNLAYE  220
                ID S   D+  G+ YL +G +       GI+   L  D L +     P    L Y 
Sbjct  111  GGGGIDPSLFHDDD-GKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVG---PVTK-LIYP  165

Query  221  PAE--KFKPIEGSWMSFREPYYYLWASHGKCC  250
                   K  EG  +  R  YYYL  + G   
Sbjct  166  GTRWVGGKVTEGPHLYKRNGYYYLTYAAGGTG  197



Lambda      K        H        a         alpha
   0.322    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00026976

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  102     2e-25


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 102 bits (255),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 59/212 (28%), Positives = 79/212 (37%), Gaps = 36/212 (17%)

Query  50   HDPNIIEYNDTFYLFMGGVH----IPISKASSLDGPWTRVGTVLDGPSIIEKQNRTRPWA  105
             DP+I+   D +YL          IPI  +  L   W  VG VL   S +  +     WA
Sbjct  11   PDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVN-WKLVGPVLVRRSQLSGRGSNASWA  69

Query  106  PTVVQHNGSFYCYYTISTPGSRNSSVGVATTDSLDSGKWTDHGALINTGSGKLSHIYPYN  165
            P +  H+G +Y YYT          + VAT DS D G W+D                  +
Sbjct  70   PDISYHDGKYYLYYTAV-----AHGIFVATADSPD-GPWSD-------------PGKLKS  110

Query  166  ESNAIDASFIVDNATGRPYLNYGSFWH-----GIFQVPLAGDLLSVEDAEHPRAVNLAYE  220
                ID S   D+  G+ YL +G +       GI+   L  D L +     P    L Y 
Sbjct  111  GGGGIDPSLFHDDD-GKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVG---PVTK-LIYP  165

Query  221  PAE--KFKPIEGSWMSFREPYYYLWASHGKCC  250
                   K  EG  +  R  YYYL  + G   
Sbjct  166  GTRWVGGKVTEGPHLYKRNGYYYLTYAAGGTG  197



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00026977

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  102     2e-25


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 102 bits (255),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 59/212 (28%), Positives = 79/212 (37%), Gaps = 36/212 (17%)

Query  50   HDPNIIEYNDTFYLFMGGVH----IPISKASSLDGPWTRVGTVLDGPSIIEKQNRTRPWA  105
             DP+I+   D +YL          IPI  +  L   W  VG VL   S +  +     WA
Sbjct  11   PDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVN-WKLVGPVLVRRSQLSGRGSNASWA  69

Query  106  PTVVQHNGSFYCYYTISTPGSRNSSVGVATTDSLDSGKWTDHGALINTGSGKLSHIYPYN  165
            P +  H+G +Y YYT          + VAT DS D G W+D                  +
Sbjct  70   PDISYHDGKYYLYYTAV-----AHGIFVATADSPD-GPWSD-------------PGKLKS  110

Query  166  ESNAIDASFIVDNATGRPYLNYGSFWH-----GIFQVPLAGDLLSVEDAEHPRAVNLAYE  220
                ID S   D+  G+ YL +G +       GI+   L  D L +     P    L Y 
Sbjct  111  GGGGIDPSLFHDDD-GKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVG---PVTK-LIYP  165

Query  221  PAE--KFKPIEGSWMSFREPYYYLWASHGKCC  250
                   K  EG  +  R  YYYL  + G   
Sbjct  166  GTRWVGGKVTEGPHLYKRNGYYYLTYAAGGTG  197



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00026978

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  101     3e-25


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 101 bits (253),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 59/212 (28%), Positives = 79/212 (37%), Gaps = 36/212 (17%)

Query  50   HDPNIIEYNDTFYLFMGGVH----IPISKASSLDGPWTRVGTVLDGPSIIEKQNRTRPWA  105
             DP+I+   D +YL          IPI  +  L   W  VG VL   S +  +     WA
Sbjct  11   PDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVN-WKLVGPVLVRRSQLSGRGSNASWA  69

Query  106  PTVVQHNGSFYCYYTISTPGSRNSSVGVATTDSLDSGKWTDHGALINTGSGKLSHIYPYN  165
            P +  H+G +Y YYT          + VAT DS D G W+D                  +
Sbjct  70   PDISYHDGKYYLYYTAV-----AHGIFVATADSPD-GPWSD-------------PGKLKS  110

Query  166  ESNAIDASFIVDNATGRPYLNYGSFWH-----GIFQVPLAGDLLSVEDAEHPRAVNLAYE  220
                ID S   D+  G+ YL +G +       GI+   L  D L +     P    L Y 
Sbjct  111  GGGGIDPSLFHDDD-GKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVG---PVTK-LIYP  165

Query  221  PAE--KFKPIEGSWMSFREPYYYLWASHGKCC  250
                   K  EG  +  R  YYYL  + G   
Sbjct  166  GTRWVGGKVTEGPHLYKRNGYYYLTYAAGGTG  197



Lambda      K        H        a         alpha
   0.321    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00022191

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  102     2e-25


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 102 bits (255),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 59/212 (28%), Positives = 79/212 (37%), Gaps = 36/212 (17%)

Query  50   HDPNIIEYNDTFYLFMGGVH----IPISKASSLDGPWTRVGTVLDGPSIIEKQNRTRPWA  105
             DP+I+   D +YL          IPI  +  L   W  VG VL   S +  +     WA
Sbjct  11   PDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVN-WKLVGPVLVRRSQLSGRGSNASWA  69

Query  106  PTVVQHNGSFYCYYTISTPGSRNSSVGVATTDSLDSGKWTDHGALINTGSGKLSHIYPYN  165
            P +  H+G +Y YYT          + VAT DS D G W+D                  +
Sbjct  70   PDISYHDGKYYLYYTAV-----AHGIFVATADSPD-GPWSD-------------PGKLKS  110

Query  166  ESNAIDASFIVDNATGRPYLNYGSFWH-----GIFQVPLAGDLLSVEDAEHPRAVNLAYE  220
                ID S   D+  G+ YL +G +       GI+   L  D L +     P    L Y 
Sbjct  111  GGGGIDPSLFHDDD-GKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVG---PVTK-LIYP  165

Query  221  PAE--KFKPIEGSWMSFREPYYYLWASHGKCC  250
                   K  EG  +  R  YYYL  + G   
Sbjct  166  GTRWVGGKVTEGPHLYKRNGYYYLTYAAGGTG  197



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00022192

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  102     2e-25


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 102 bits (255),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 59/212 (28%), Positives = 79/212 (37%), Gaps = 36/212 (17%)

Query  50   HDPNIIEYNDTFYLFMGGVH----IPISKASSLDGPWTRVGTVLDGPSIIEKQNRTRPWA  105
             DP+I+   D +YL          IPI  +  L   W  VG VL   S +  +     WA
Sbjct  11   PDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVN-WKLVGPVLVRRSQLSGRGSNASWA  69

Query  106  PTVVQHNGSFYCYYTISTPGSRNSSVGVATTDSLDSGKWTDHGALINTGSGKLSHIYPYN  165
            P +  H+G +Y YYT          + VAT DS D G W+D                  +
Sbjct  70   PDISYHDGKYYLYYTAV-----AHGIFVATADSPD-GPWSD-------------PGKLKS  110

Query  166  ESNAIDASFIVDNATGRPYLNYGSFWH-----GIFQVPLAGDLLSVEDAEHPRAVNLAYE  220
                ID S   D+  G+ YL +G +       GI+   L  D L +     P    L Y 
Sbjct  111  GGGGIDPSLFHDDD-GKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVG---PVTK-LIYP  165

Query  221  PAE--KFKPIEGSWMSFREPYYYLWASHGKCC  250
                   K  EG  +  R  YYYL  + G   
Sbjct  166  GTRWVGGKVTEGPHLYKRNGYYYLTYAAGGTG  197



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00022194

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  102     4e-25


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 102 bits (255),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 59/212 (28%), Positives = 79/212 (37%), Gaps = 36/212 (17%)

Query  50   HDPNIIEYNDTFYLFMGGVH----IPISKASSLDGPWTRVGTVLDGPSIIEKQNRTRPWA  105
             DP+I+   D +YL          IPI  +  L   W  VG VL   S +  +     WA
Sbjct  11   PDPSILRVGDDYYLTTSSFEWFPGIPIFHSKDLVN-WKLVGPVLVRRSQLSGRGSNASWA  69

Query  106  PTVVQHNGSFYCYYTISTPGSRNSSVGVATTDSLDSGKWTDHGALINTGSGKLSHIYPYN  165
            P +  H+G +Y YYT          + VAT DS D G W+D                  +
Sbjct  70   PDISYHDGKYYLYYTAV-----AHGIFVATADSPD-GPWSD-------------PGKLKS  110

Query  166  ESNAIDASFIVDNATGRPYLNYGSFWH-----GIFQVPLAGDLLSVEDAEHPRAVNLAYE  220
                ID S   D+  G+ YL +G +       GI+   L  D L +     P    L Y 
Sbjct  111  GGGGIDPSLFHDDD-GKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVG---PVTK-LIYP  165

Query  221  PAE--KFKPIEGSWMSFREPYYYLWASHGKCC  250
                   K  EG  +  R  YYYL  + G   
Sbjct  166  GTRWVGGKVTEGPHLYKRNGYYYLTYAAGGTG  197



Lambda      K        H        a         alpha
   0.321    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00022190

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00026979

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00026980

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00026981

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00026982

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             259     4e-81


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 259 bits (665),  Expect = 4e-81, Method: Composition-based stats.
 Identities = 149/542 (27%), Positives = 209/542 (39%), Gaps = 115/542 (21%)

Query  27   IIQTNYGPVQGFKYFNESTLERFFGVSESNVTAFLGIPFAADTGYQNRWKPPQPREPWNE  86
            ++ T+ G V+G +   +             V AFLGIP+A     + R++PP+P EPW  
Sbjct  4    VVTTSLGRVRGKRLKVDGG---------KPVYAFLGIPYAEPPVGELRFQPPEPPEPWTG  54

Query  87   TLKATRFGPRCP--------TGESSYISEDCLSLNLWTNAGSADA--KLPVMVWNQGSDE  136
               AT+FGPRCP               SEDCL LN++T     +   KLPVMVW  G   
Sbjct  55   VRDATKFGPRCPQNGDLTSPGSSGLEGSEDCLYLNVYTPKELKENKNKLPVMVWIHGGGF  114

Query  137  TSDQSWWYGGG--MALKDVILITFNRRDDVFGYLAHPDLNAEGLAVTGH-NTSGNYGVLD  193
                   Y G    A  DVI++T N R    G+L+           TG     GNYG+LD
Sbjct  115  MFGSGSLYDGSYLAAEGDVIVVTINYRLGPLGFLS-----------TGDDEAPGNYGLLD  163

Query  194  QLEVLKWVKKNIADFGGDPDRVVVAGQSFGSSQV-YHAVNSPLFKGYFHGGISQSGIRYP  252
            Q+  L+WV++NIA FGGDP+RV + G+S G++ V    + SPL KG FH  I  SG    
Sbjct  164  QVLALRWVQENIASFGGDPNRVTLFGESAGAASVSLLLL-SPLSKGLFHRAILMSGS--A  220

Query  253  YDPLLAGLATSYVNMSTALIHGADYMAAH---NASSIAE----LRTLSMEELLVGSQDRV  305
              P        +   S A    A  +A       S  AE    LR+   EELL    D  
Sbjct  221  LSP--------WAIQSNAR-QRAKELAKLVGCPTSDSAELVECLRSKPAEELL----DAQ  267

Query  306  NSTWISWVTALSAGYPLIFKPVLDNYVLPSKYIETLLNGPANDVPVITGNTKDESGAS--  363
                +       +   + F PV+D   LP    E L +G    VP++ G TKDE      
Sbjct  268  LKLLVYG-----SVPFVPFGPVVDGDFLPEHPEELLKSGNFPKVPLLIGVTKDEGLLFAA  322

Query  364  ---PSTNYTVEEYENYTSHKYGDLYNRYIKLYPDNGNQSTADQSWNAAARDASLVGSWAY  420
                + +      E        DL    +   P+  + +  ++  +   RD       A 
Sbjct  323  YILDNVDILKALEEKLLRSLLIDLLYLLLVDLPEEISAALREEYLDWGDRDDPETSRRAL  382

Query  421  ---------------ATEWYKAASAPFYTYYWTHAPPG----QNQGAFHQSEIMYALNA-  460
                             + + +   P Y Y + +        +  G  H  E+ Y     
Sbjct  383  VELLTDYLFNCPVIRFADLHASRGTPVYMYSFDYRGSSLRYPKWVGVDHGDELPYVFGTP  442

Query  461  ---------------------WANFAKTLDPNKGGSYKGKGVLPHWSPNSPNGTQVVMEL  499
                                 W NFAKT +PN      G   LP W P +    Q  + +
Sbjct  443  FVGALLFTEEDEKLSRKMMTYWTNFAKTGNPN------GPEGLPKWPPYTDENGQ-YLSI  495

Query  500  GN  501
              
Sbjct  496  DL  497



Lambda      K        H        a         alpha
   0.315    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00022196

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             239     1e-73


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 239 bits (611),  Expect = 1e-73, Method: Composition-based stats.
 Identities = 135/478 (28%), Positives = 191/478 (40%), Gaps = 86/478 (18%)

Query  27   IIQTNYGPVQGFKYFNESTLERFFGVSESNVTAFLGIPFAADTGYQNRWKPPQPREPWNE  86
            ++ T+ G V+G +   +             V AFLGIP+A     + R++PP+P EPW  
Sbjct  4    VVTTSLGRVRGKRLKVDGG---------KPVYAFLGIPYAEPPVGELRFQPPEPPEPWTG  54

Query  87   TLKATRFGPRCP--------TGESSYISEDCLSLNLWTNAGSADA--KLPVMVWNQGSDE  136
               AT+FGPRCP               SEDCL LN++T     +   KLPVMVW  G   
Sbjct  55   VRDATKFGPRCPQNGDLTSPGSSGLEGSEDCLYLNVYTPKELKENKNKLPVMVWIHGGGF  114

Query  137  TSDQSWWYGGG--MALKDVILITFNRRDDVFGYLAHPDLNAEGLAVTGH-NTSGNYGVLD  193
                   Y G    A  DVI++T N R    G+L+           TG     GNYG+LD
Sbjct  115  MFGSGSLYDGSYLAAEGDVIVVTINYRLGPLGFLS-----------TGDDEAPGNYGLLD  163

Query  194  QLEVLKWVKKNIADFGGDPDRVVVAGQSFGSSQV-YHAVNSPLFKGYFHGGISQSGIRYP  252
            Q+  L+WV++NIA FGGDP+RV + G+S G++ V    + SPL KG FH  I  SG    
Sbjct  164  QVLALRWVQENIASFGGDPNRVTLFGESAGAASVSLLLL-SPLSKGLFHRAILMSGS--A  220

Query  253  YDPLLAGLATSYVNMSTALIHGADYMAAH---NASSIAE----LRTLSMEELLVGSQDRV  305
              P        +   S A    A  +A       S  AE    LR+   EELL    D  
Sbjct  221  LSP--------WAIQSNAR-QRAKELAKLVGCPTSDSAELVECLRSKPAEELL----DAQ  267

Query  306  NSTWISWVTALSAGYPLIFKPVLDNYVLPSKYIETLLNGPANDVPVITGNTKDESGAS--  363
                +       +   + F PV+D   LP    E L +G    VP++ G TKDE      
Sbjct  268  LKLLVYG-----SVPFVPFGPVVDGDFLPEHPEELLKSGNFPKVPLLIGVTKDEGLLFAA  322

Query  364  ---PSTNYTVEEYENYTSHKYGDLYNRYIKLYPDNGNQSTADQSWNAAARDASLVGSWAY  420
                + +      E        DL    +   P+  + +  ++  +   RD       A 
Sbjct  323  YILDNVDILKALEEKLLRSLLIDLLYLLLVDLPEEISAALREEYLDWGDRDDPETSRRAL  382

Query  421  ---------------ATEWYKAASAPFYTYYWTHAPPG----QNQGAFHQSEIMYALN  459
                             + + +   P Y Y + +        +  G  H  E+ Y   
Sbjct  383  VELLTDYLFNCPVIRFADLHASRGTPVYMYSFDYRGSSLRYPKWVGVDHGDELPYVFG  440



Lambda      K        H        a         alpha
   0.316    0.132    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00022198

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   158     2e-49


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 158 bits (403),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 60/173 (35%), Positives = 92/173 (53%), Gaps = 13/173 (8%)

Query  58   TNGVLSHTDEGTEFTITGENQSPTMQSNFYIFFGIVESHVKMAKGAGIISSIVLQS---D  114
                +S ++ G   T+  +      QS FY  +G VE+ +K A+GAG++++  L S   D
Sbjct  2    GGDNVSVSNGGLTLTLD-KYTGSGFQSKFYYLYGKVEARIKAARGAGVVTAFYLSSEDWD  60

Query  115  DLDEIDWEWVGYNTSEVQSNYFGKGNNETFNRGGYHYV--PNADTEFHNYTTYWTQEKLE  172
            D DEID+E++G +T +VQ+N +G G     NRG   +    +   +FH Y+  W  +K+ 
Sbjct  61   DHDEIDFEFLGNDTGQVQTNVYGNGKG---NRGEQRFSLWFDPTADFHTYSILWNPDKIT  117

Query  173  WWIDGKLARTLTYEDSQGAGKYYPQTPCNIRYGIWPAGIKGNAQG--TIEWAG  223
            W++DG   RTL   D+ G    YPQTP  +   +WP G      G   I+WAG
Sbjct  118  WYVDGVPVRTLKNNDAGGVP--YPQTPMRLYVSLWPGGDWATPGGGVKIDWAG  168



Lambda      K        H        a         alpha
   0.317    0.133    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00022199

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16   158     2e-49


>CDD:395585 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16.  
Length=168

 Score = 158 bits (403),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 60/173 (35%), Positives = 92/173 (53%), Gaps = 13/173 (8%)

Query  58   TNGVLSHTDEGTEFTITGENQSPTMQSNFYIFFGIVESHVKMAKGAGIISSIVLQS---D  114
                +S ++ G   T+  +      QS FY  +G VE+ +K A+GAG++++  L S   D
Sbjct  2    GGDNVSVSNGGLTLTLD-KYTGSGFQSKFYYLYGKVEARIKAARGAGVVTAFYLSSEDWD  60

Query  115  DLDEIDWEWVGYNTSEVQSNYFGKGNNETFNRGGYHYV--PNADTEFHNYTTYWTQEKLE  172
            D DEID+E++G +T +VQ+N +G G     NRG   +    +   +FH Y+  W  +K+ 
Sbjct  61   DHDEIDFEFLGNDTGQVQTNVYGNGKG---NRGEQRFSLWFDPTADFHTYSILWNPDKIT  117

Query  173  WWIDGKLARTLTYEDSQGAGKYYPQTPCNIRYGIWPAGIKGNAQG--TIEWAG  223
            W++DG   RTL   D+ G    YPQTP  +   +WP G      G   I+WAG
Sbjct  118  WYVDGVPVRTLKNNDAGGVP--YPQTPMRLYVSLWPGGDWATPGGGVKIDWAG  168



Lambda      K        H        a         alpha
   0.317    0.133    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00022200

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00022201

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461901 pfam06415, iPGM_N, BPG-independent PGAM N-terminus (iP...  266     9e-92
CDD:396305 pfam01676, Metalloenzyme, Metalloenzyme superfamily. T...  102     5e-26


>CDD:461901 pfam06415, iPGM_N, BPG-independent PGAM N-terminus (iPGM_N). 
 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent 
phosphoglycerate mutase (or phosphoglyceromutase 
or BPG-independent PGAM) protein (EC:5.4.2.1). 
The family is found in conjunction with pfam01676 (located 
in the C-terminal region of the protein).
Length=217

 Score = 266 bits (683),  Expect = 9e-92, Method: Composition-based stats.
 Identities = 81/167 (49%), Positives = 115/167 (69%), Gaps = 0/167 (0%)

Query  55   IDQTLKKGELNKVDNVVKSFTRAKEGNGRLHLLGLVSDGGVHSNITHLVGLLKVAKEMEI  114
            I++ ++ G   +   ++K+   AK   G LHL+GL+SDGGVHS+I HL  LL++AKE  +
Sbjct  1    INKAIEDGSFFENPALLKAIENAKANGGALHLMGLLSDGGVHSHIDHLFALLELAKEEGV  60

Query  115  PQVFIHFFGDGRDTDPKSAIKYMQDLLDHTKEIGIGEIATVVGRYYAMDRDKRWDRVEVA  174
             +V++H F DGRDT PKSA+ Y++ L     E+G+G+IATV GRYYAMDRDKRWDRVE A
Sbjct  61   KKVYVHAFLDGRDTPPKSALGYLEQLEAKLAELGVGKIATVSGRYYAMDRDKRWDRVEKA  120

Query  175  MKGIVSGEGEESSDPVKTIKERYEKGENDEFLKPIIVGGKERRVQGM  221
               +V GEGE ++D V+ I+  Y +GE DEF+KP ++    + V  +
Sbjct  121  YDALVLGEGESAADAVEAIEASYARGETDEFVKPTVIVDDGKPVGTI  167


>CDD:396305 pfam01676, Metalloenzyme, Metalloenzyme superfamily.  This family 
includes phosphopentomutase and 2,3-bisphosphoglycerate-independent 
phosphoglycerate mutase. This family is also related 
to pfam00245. The alignment contains the most conserved 
residues that are probably involved in metal binding and catalysis.
Length=410

 Score = 102 bits (255),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 53/118 (45%), Positives = 65/118 (55%), Gaps = 4/118 (3%)

Query  15   YTELDASSLAVGLPEGLMGNSEVGHLNIGAGRVVWQDSVRIDQTLKKGE--LNKVDNVVK  72
               + AS LAVGLPEG MG S+VGHL IG GR+V+Q   R D  +  G   L   D   +
Sbjct  42   EQLIGASGLAVGLPEGQMGGSDVGHLEIGGGRIVYQYLGRGDLEIAGGGFFLKPADLAAR  101

Query  73   SFTRAKEGNGRLHLLGLVSDGGVHSNITHLVGLLKVAKEMEIPQVFIHFFGDGRDTDP  130
                   GNG LH LGL S GGVHS+I HL+ L+ +AKE    +V +   GD R    
Sbjct  102  I--NFATGNGHLHGLGLDSGGGVHSHIEHLLALIALAKEAGAIKVHLLGDGDDRPVGY  157



Lambda      K        H        a         alpha
   0.315    0.136    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00022202

Length=167
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462202 pfam07544, Med9, RNA polymerase II transcription media...  57.6    3e-12


>CDD:462202 pfam07544, Med9, RNA polymerase II transcription mediator complex 
subunit 9.  This family of Med9 proteins is conserved in 
yeasts. It forms part of the middle region of Mediator. Med9 
has two functional domains. The species-specific amino-terminal 
half (aa 1-63) plays a regulatory role in transcriptional 
regulation, whereas this well-conserved carboxy-terminal 
half (aa 64-149) has a more fundamental function involved 
in direct binding to the amino-terminal portions of Med4 and 
Med7 and the assembly of Med9 into the Middle module. Also, 
some unidentified factor(s) in med9 extracts may impact the 
binding of TFIID to the promoter.
Length=80

 Score = 57.6 bits (140),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 39/62 (63%), Gaps = 0/62 (0%)

Query  102  LTAKDLPTEASSIRIRIQKAHAAVESLPDIGRSVAEQENEIEELENRIARLNAVLAEFGK  161
            L++KDL T    +R ++QKA A +  LP I RSV EQE EIE LE ++AR   +L ++  
Sbjct  19   LSSKDLDTATGELRHKLQKARALIRELPGIDRSVEEQEAEIENLEQQLARKRELLKKYKN  78

Query  162  RA  163
            R 
Sbjct  79   RV  80



Lambda      K        H        a         alpha
   0.308    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00026983

Length=121
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase           243     9e-82


>CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase.  
Length=399

 Score = 243 bits (621),  Expect = 9e-82, Method: Composition-based stats.
 Identities = 85/121 (70%), Positives = 97/121 (80%), Gaps = 0/121 (0%)

Query  1    MSNKYSEGYPGARYYGGNQHIDAIELTCQARALKAFNLDPEKWGVNVQCLSGSPANLEVY  60
            ++NKYSEGYPG RYYGG +H+D IE  CQ RAL+AF LDP KWGVNVQ LSGSPANL VY
Sbjct  44   LTNKYSEGYPGKRYYGGCEHVDEIETLCQDRALEAFGLDPAKWGVNVQPLSGSPANLAVY  103

Query  61   QALMRPHDRLMGLDLPHGGHLSHGYQTPSRKISAVSTYFETFPYRVNTETGIIDYDTLEA  120
             AL+ P DR+MGLDLPHGGHL+HGY   S+KISA S +FE+ PY V+ ETG IDYD LE 
Sbjct  104  TALLEPGDRIMGLDLPHGGHLTHGYPVNSKKISASSKFFESMPYGVDPETGYIDYDQLEK  163

Query  121  N  121
            N
Sbjct  164  N  164



Lambda      K        H        a         alpha
   0.317    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00022203

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase           770     0.0  


>CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase.  
Length=399

 Score = 770 bits (1991),  Expect = 0.0, Method: Composition-based stats.
 Identities = 286/400 (72%), Positives = 330/400 (83%), Gaps = 1/400 (0%)

Query  18   LVDSDPEIAQIMEKEIQRQRESILLIASENVTSRAVFDALGSPMSNKYSEGYPGARYYGG  77
            L DSDPE+  I++KE +RQRE I LIASEN TSRAV +ALGS ++NKYSEGYPG RYYGG
Sbjct  1    LEDSDPEVFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYSEGYPGKRYYGG  60

Query  78   NQHIDAIELTCQARALKAFNLDPEKWGVNVQCLSGSPANLEVYQALMRPHDRLMGLDLPH  137
             +H+D IE  CQ RAL+AF LDP KWGVNVQ LSGSPANL VY AL+ P DR+MGLDLPH
Sbjct  61   CEHVDEIETLCQDRALEAFGLDPAKWGVNVQPLSGSPANLAVYTALLEPGDRIMGLDLPH  120

Query  138  GGHLSHGYQTPSRKISAVSTYFETFPYRVNTETGIIDYDTLEANAELYRPKCLVAGTSAY  197
            GGHL+HGY   S+KISA S +FE+ PY V+ ETG IDYD LE NA+L+RPK +VAGTSAY
Sbjct  121  GGHLTHGYPVNSKKISASSKFFESMPYGVDPETGYIDYDQLEKNAKLFRPKLIVAGTSAY  180

Query  198  CRLIDYGRMRKIADKVGAYLIVDMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGA  257
             RLIDY R R+IAD+VGAYL+VDMAHISGLVAAGVIPSPF YADVVTTTTHK+LRGPRG 
Sbjct  181  SRLIDYARFREIADEVGAYLMVDMAHISGLVAAGVIPSPFPYADVVTTTTHKTLRGPRGG  240

Query  258  MIFFRKGVRSTDPKTGKEIMYDLEGPINFSVFPGHQGGPHNHTITALAVALKQAATPEFR  317
            MIF+RKGV+S D KTGKEI+Y+LE  IN +VFPG QGGPHNH I A AVALKQA TPEF+
Sbjct  241  MIFYRKGVKSVD-KTGKEILYELEKKINSAVFPGLQGGPHNHVIAAKAVALKQALTPEFK  299

Query  318  QYQEQVLKNAKALEVEFKALGHKLVSDGTDSHMVLLDLRPKGLDGARVEAVLEQINIACN  377
            +YQ+QV+KNAKAL       G+KLVS GTD+H+VL+DLRPKGLDGAR E VLE  NI  N
Sbjct  300  EYQQQVVKNAKALAEALTERGYKLVSGGTDNHLVLVDLRPKGLDGARAEKVLEAANITAN  359

Query  378  KNSIPGDKSALTPCGIRIGTPAMTSRGMSEEDFKRVARYI  417
            KN+IPGDKSA  P G+R+GTPA+TSRG  E DF++VA +I
Sbjct  360  KNTIPGDKSAFVPSGLRLGTPALTSRGFGEADFEKVAGFI  399



Lambda      K        H        a         alpha
   0.317    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00022204

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase           265     3e-90


>CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase.  
Length=399

 Score = 265 bits (680),  Expect = 3e-90, Method: Composition-based stats.
 Identities = 95/134 (71%), Positives = 109/134 (81%), Gaps = 0/134 (0%)

Query  18   LVDSDPEIAQIMEKEIQRQRESILLIASENVTSRAVFDALGSPMSNKYSEGYPGARYYGG  77
            L DSDPE+  I++KE +RQRE I LIASEN TSRAV +ALGS ++NKYSEGYPG RYYGG
Sbjct  1    LEDSDPEVFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYSEGYPGKRYYGG  60

Query  78   NQHIDAIELTCQARALKAFNLDPEKWGVNVQCLSGSPANLEVYQALMRPHDRLMGLDLPH  137
             +H+D IE  CQ RAL+AF LDP KWGVNVQ LSGSPANL VY AL+ P DR+MGLDLPH
Sbjct  61   CEHVDEIETLCQDRALEAFGLDPAKWGVNVQPLSGSPANLAVYTALLEPGDRIMGLDLPH  120

Query  138  GGHLSHGYQTPSRK  151
            GGHL+HGY   S+K
Sbjct  121  GGHLTHGYPVNSKK  134



Lambda      K        H        a         alpha
   0.315    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00026984

Length=458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase           771     0.0  


>CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase.  
Length=399

 Score = 771 bits (1992),  Expect = 0.0, Method: Composition-based stats.
 Identities = 286/400 (72%), Positives = 330/400 (83%), Gaps = 1/400 (0%)

Query  5    LVDSDPEIAQIMEKEIQRQRESILLIASENVTSRAVFDALGSPMSNKYSEGYPGARYYGG  64
            L DSDPE+  I++KE +RQRE I LIASEN TSRAV +ALGS ++NKYSEGYPG RYYGG
Sbjct  1    LEDSDPEVFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYSEGYPGKRYYGG  60

Query  65   NQHIDAIELTCQARALKAFNLDPEKWGVNVQCLSGSPANLEVYQALMRPHDRLMGLDLPH  124
             +H+D IE  CQ RAL+AF LDP KWGVNVQ LSGSPANL VY AL+ P DR+MGLDLPH
Sbjct  61   CEHVDEIETLCQDRALEAFGLDPAKWGVNVQPLSGSPANLAVYTALLEPGDRIMGLDLPH  120

Query  125  GGHLSHGYQTPSRKISAVSTYFETFPYRVNTETGIIDYDTLEANAELYRPKCLVAGTSAY  184
            GGHL+HGY   S+KISA S +FE+ PY V+ ETG IDYD LE NA+L+RPK +VAGTSAY
Sbjct  121  GGHLTHGYPVNSKKISASSKFFESMPYGVDPETGYIDYDQLEKNAKLFRPKLIVAGTSAY  180

Query  185  CRLIDYGRMRKIADKVGAYLIVDMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGA  244
             RLIDY R R+IAD+VGAYL+VDMAHISGLVAAGVIPSPF YADVVTTTTHK+LRGPRG 
Sbjct  181  SRLIDYARFREIADEVGAYLMVDMAHISGLVAAGVIPSPFPYADVVTTTTHKTLRGPRGG  240

Query  245  MIFFRKGVRSTDPKTGKEIMYDLEGPINFSVFPGHQGGPHNHTITALAVALKQAATPEFR  304
            MIF+RKGV+S D KTGKEI+Y+LE  IN +VFPG QGGPHNH I A AVALKQA TPEF+
Sbjct  241  MIFYRKGVKSVD-KTGKEILYELEKKINSAVFPGLQGGPHNHVIAAKAVALKQALTPEFK  299

Query  305  QYQEQVLKNAKALEVEFKALGHKLVSDGTDSHMVLLDLRPKGLDGARVEAVLEQINIACN  364
            +YQ+QV+KNAKAL       G+KLVS GTD+H+VL+DLRPKGLDGAR E VLE  NI  N
Sbjct  300  EYQQQVVKNAKALAEALTERGYKLVSGGTDNHLVLVDLRPKGLDGARAEKVLEAANITAN  359

Query  365  KNSIPGDKSALTPCGIRIGTPAMTSRGMSEEDFKRVARYI  404
            KN+IPGDKSA  P G+R+GTPA+TSRG  E DF++VA +I
Sbjct  360  KNTIPGDKSAFVPSGLRLGTPALTSRGFGEADFEKVAGFI  399



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 564403072


Query= TCONS_00022205

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase           770     0.0  


>CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase.  
Length=399

 Score = 770 bits (1991),  Expect = 0.0, Method: Composition-based stats.
 Identities = 286/400 (72%), Positives = 330/400 (83%), Gaps = 1/400 (0%)

Query  18   LVDSDPEIAQIMEKEIQRQRESILLIASENVTSRAVFDALGSPMSNKYSEGYPGARYYGG  77
            L DSDPE+  I++KE +RQRE I LIASEN TSRAV +ALGS ++NKYSEGYPG RYYGG
Sbjct  1    LEDSDPEVFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYSEGYPGKRYYGG  60

Query  78   NQHIDAIELTCQARALKAFNLDPEKWGVNVQCLSGSPANLEVYQALMRPHDRLMGLDLPH  137
             +H+D IE  CQ RAL+AF LDP KWGVNVQ LSGSPANL VY AL+ P DR+MGLDLPH
Sbjct  61   CEHVDEIETLCQDRALEAFGLDPAKWGVNVQPLSGSPANLAVYTALLEPGDRIMGLDLPH  120

Query  138  GGHLSHGYQTPSRKISAVSTYFETFPYRVNTETGIIDYDTLEANAELYRPKCLVAGTSAY  197
            GGHL+HGY   S+KISA S +FE+ PY V+ ETG IDYD LE NA+L+RPK +VAGTSAY
Sbjct  121  GGHLTHGYPVNSKKISASSKFFESMPYGVDPETGYIDYDQLEKNAKLFRPKLIVAGTSAY  180

Query  198  CRLIDYGRMRKIADKVGAYLIVDMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGA  257
             RLIDY R R+IAD+VGAYL+VDMAHISGLVAAGVIPSPF YADVVTTTTHK+LRGPRG 
Sbjct  181  SRLIDYARFREIADEVGAYLMVDMAHISGLVAAGVIPSPFPYADVVTTTTHKTLRGPRGG  240

Query  258  MIFFRKGVRSTDPKTGKEIMYDLEGPINFSVFPGHQGGPHNHTITALAVALKQAATPEFR  317
            MIF+RKGV+S D KTGKEI+Y+LE  IN +VFPG QGGPHNH I A AVALKQA TPEF+
Sbjct  241  MIFYRKGVKSVD-KTGKEILYELEKKINSAVFPGLQGGPHNHVIAAKAVALKQALTPEFK  299

Query  318  QYQEQVLKNAKALEVEFKALGHKLVSDGTDSHMVLLDLRPKGLDGARVEAVLEQINIACN  377
            +YQ+QV+KNAKAL       G+KLVS GTD+H+VL+DLRPKGLDGAR E VLE  NI  N
Sbjct  300  EYQQQVVKNAKALAEALTERGYKLVSGGTDNHLVLVDLRPKGLDGARAEKVLEAANITAN  359

Query  378  KNSIPGDKSALTPCGIRIGTPAMTSRGMSEEDFKRVARYI  417
            KN+IPGDKSA  P G+R+GTPA+TSRG  E DF++VA +I
Sbjct  360  KNTIPGDKSAFVPSGLRLGTPALTSRGFGEADFEKVAGFI  399



Lambda      K        H        a         alpha
   0.317    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00022206

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  185     3e-58
CDD:462762 pfam09336, Vps4_C, Vps4 C terminal oligomerization dom...  129     8e-38
CDD:461228 pfam04212, MIT, MIT (microtubule interacting and trans...  96.1    3e-25


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 185 bits (472),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 63/130 (48%), Positives = 89/130 (68%), Gaps = 0/130 (0%)

Query  169  ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLVKQLFNMARENKPAI  228
            +LLYGPPGTGK+ LAKAVA E  + F  +S S+LVSK++GESE+ +++LF  A++  P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  229  IFIDEVDALCGPRGEGESEASRRIKTELLVQMDGVGKDSRGVLILGATNIPWQLDAAIRR  288
            IFIDE+DAL G RG G    SRR+  +LL ++DG    +  V+++ ATN P +LD A+  
Sbjct  61   IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPALLG  120

Query  289  RFQRRVHISL  298
            RF R +   L
Sbjct  121  RFDRIIEFPL  130


>CDD:462762 pfam09336, Vps4_C, Vps4 C terminal oligomerization domain.  This 
domain is found at the C terminal of ATPase proteins involved 
in vacuolar sorting. It forms an alpha helix structure 
and is required for oligomerization.
Length=61

 Score = 129 bits (328),  Expect = 8e-38, Method: Composition-based stats.
 Identities = 42/61 (69%), Positives = 56/61 (92%), Gaps = 0/61 (0%)

Query  371  LTPCSPGDSGAIEMSWVDIEADQLLEPPLMLKDFIKAVRNSRPTVSQEDLQRNAEWTKEF  430
            LTPCSPGD GAIEM+W+DI +D+LLEPP+ +KDF+KA+++SRPTVS+EDL++  E+TKEF
Sbjct  1    LTPCSPGDPGAIEMTWMDIPSDKLLEPPVTMKDFLKALKSSRPTVSKEDLEKYEEFTKEF  60

Query  431  G  431
            G
Sbjct  61   G  61


>CDD:461228 pfam04212, MIT, MIT (microtubule interacting and transport) domain. 
 The MIT domain forms an asymmetric three-helix bundle 
and binds ESCRT-III (endosomal sorting complexes required 
for transport) substrates.
Length=66

 Score = 96.1 bits (240),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 34/66 (52%), Positives = 48/66 (73%), Gaps = 0/66 (0%)

Query  8   LGRAIDAVKKAIELDNGGEYEKAYQGYYSALELFMLALKWEKNPRSKEMIRAKTAEYMDR  67
           L +A++ VKKA+E DN G YE+A + Y  AL+  +LALK  KN   +E++RAK AEY++R
Sbjct  1   LSKALELVKKAVEEDNAGNYEEALELYKEALDYLLLALKETKNEERRELLRAKIAEYLER  60

Query  68  AEKLKN  73
           AE+LK 
Sbjct  61  AEELKE  66



Lambda      K        H        a         alpha
   0.314    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 529127880


Query= TCONS_00026985

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase           410     4e-145


>CDD:395372 pfam00464, SHMT, Serine hydroxymethyltransferase.  
Length=399

 Score = 410 bits (1056),  Expect = 4e-145, Method: Composition-based stats.
 Identities = 154/212 (73%), Positives = 178/212 (84%), Gaps = 1/212 (0%)

Query  1    MRKIADKVGAYLIVDMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGV  60
             R+IAD+VGAYL+VDMAHISGLVAAGVIPSPF YADVVTTTTHK+LRGPRG MIF+RKGV
Sbjct  189  FREIADEVGAYLMVDMAHISGLVAAGVIPSPFPYADVVTTTTHKTLRGPRGGMIFYRKGV  248

Query  61   RSTDPKTGKEIMYDLEGPINFSVFPGHQGGPHNHTITALAVALKQAATPEFRQYQEQVLK  120
            +S D KTGKEI+Y+LE  IN +VFPG QGGPHNH I A AVALKQA TPEF++YQ+QV+K
Sbjct  249  KSVD-KTGKEILYELEKKINSAVFPGLQGGPHNHVIAAKAVALKQALTPEFKEYQQQVVK  307

Query  121  NAKALEVEFKALGHKLVSDGTDSHMVLLDLRPKGLDGARVEAVLEQINIACNKNSIPGDK  180
            NAKAL       G+KLVS GTD+H+VL+DLRPKGLDGAR E VLE  NI  NKN+IPGDK
Sbjct  308  NAKALAEALTERGYKLVSGGTDNHLVLVDLRPKGLDGARAEKVLEAANITANKNTIPGDK  367

Query  181  SALTPCGIRIGTPAMTSRGMSEEDFKRVARYI  212
            SA  P G+R+GTPA+TSRG  E DF++VA +I
Sbjct  368  SAFVPSGLRLGTPALTSRGFGEADFEKVAGFI  399



Lambda      K        H        a         alpha
   0.318    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00026987

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461221 pfam04194, PDCD2_C, Programmed cell death protein 2, C...  173     8e-54


>CDD:461221 pfam04194, PDCD2_C, Programmed cell death protein 2, C-terminal 
putative domain.  
Length=111

 Score = 173 bits (440),  Expect = 8e-54, Method: Composition-based stats.
 Identities = 60/138 (43%), Positives = 68/138 (49%), Gaps = 29/138 (21%)

Query  288  DKAFIRFSTRLAHNPEQVLRYEFRGSPLLYSYTDAVGKRLHDPKHGASGSRVTTVTSGAS  347
            DK F +F  R+A NPEQVLRY F G PL YS                         S AS
Sbjct  1    DKTFQKFQKRIAANPEQVLRYSFGGKPLWYS--------------------SEGRPSLAS  40

Query  348  RFPRCEYCGSERVFELQLVPHAITVLEEGREGVGLEPKDDAGMEWGTIILGVCSKDCGPK  407
              P CE CG  RVFE QL+P  I  LE   E        D GM+WGTII+  CSK C P 
Sbjct  41   DIPNCENCGGPRVFEFQLMPQLINYLEVDDES-------DDGMDWGTIIVYTCSKSCDPP  93

Query  408  QV--GVVGWREEWAGVQW  423
            +   G VG+ EE+  VQW
Sbjct  94   EWDEGDVGYVEEFVWVQW  111



Lambda      K        H        a         alpha
   0.312    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00022207

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  185     2e-58
CDD:462762 pfam09336, Vps4_C, Vps4 C terminal oligomerization dom...  128     9e-38


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 185 bits (471),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 63/130 (48%), Positives = 89/130 (68%), Gaps = 0/130 (0%)

Query  128  ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLVKQLFNMARENKPAI  187
            +LLYGPPGTGK+ LAKAVA E  + F  +S S+LVSK++GESE+ +++LF  A++  P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  188  IFIDEVDALCGPRGEGESEASRRIKTELLVQMDGVGKDSRGVLILGATNIPWQLDAAIRR  247
            IFIDE+DAL G RG G    SRR+  +LL ++DG    +  V+++ ATN P +LD A+  
Sbjct  61   IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPALLG  120

Query  248  RFQRRVHISL  257
            RF R +   L
Sbjct  121  RFDRIIEFPL  130


>CDD:462762 pfam09336, Vps4_C, Vps4 C terminal oligomerization domain.  This 
domain is found at the C terminal of ATPase proteins involved 
in vacuolar sorting. It forms an alpha helix structure 
and is required for oligomerization.
Length=61

 Score = 128 bits (325),  Expect = 9e-38, Method: Composition-based stats.
 Identities = 42/61 (69%), Positives = 56/61 (92%), Gaps = 0/61 (0%)

Query  330  LTPCSPGDSGAIEMSWVDIEADQLLEPPLMLKDFIKAVRNSRPTVSQEDLQRNAEWTKEF  389
            LTPCSPGD GAIEM+W+DI +D+LLEPP+ +KDF+KA+++SRPTVS+EDL++  E+TKEF
Sbjct  1    LTPCSPGDPGAIEMTWMDIPSDKLLEPPVTMKDFLKALKSSRPTVSKEDLEKYEEFTKEF  60

Query  390  G  390
            G
Sbjct  61   G  61



Lambda      K        H        a         alpha
   0.314    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00026989

Length=229
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462762 pfam09336, Vps4_C, Vps4 C terminal oligomerization dom...  129     1e-39
CDD:459627 pfam00004, AAA, ATPase family associated with various ...  117     2e-34


>CDD:462762 pfam09336, Vps4_C, Vps4 C terminal oligomerization domain.  This 
domain is found at the C terminal of ATPase proteins involved 
in vacuolar sorting. It forms an alpha helix structure 
and is required for oligomerization.
Length=61

 Score = 129 bits (326),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 42/61 (69%), Positives = 56/61 (92%), Gaps = 0/61 (0%)

Query  165  LTPCSPGDSGAIEMSWVDIEADQLLEPPLMLKDFIKAVRNSRPTVSQEDLQRNAEWTKEF  224
            LTPCSPGD GAIEM+W+DI +D+LLEPP+ +KDF+KA+++SRPTVS+EDL++  E+TKEF
Sbjct  1    LTPCSPGDPGAIEMTWMDIPSDKLLEPPVTMKDFLKALKSSRPTVSKEDLEKYEEFTKEF  60

Query  225  G  225
            G
Sbjct  61   G  61


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 117 bits (296),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 59/92 (64%), Gaps = 0/92 (0%)

Query  1    MGESERLVKQLFNMARENKPAIIFIDEVDALCGPRGEGESEASRRIKTELLVQMDGVGKD  60
            +GESE+ +++LF  A++  P +IFIDE+DAL G RG G    SRR+  +LL ++DG    
Sbjct  39   VGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSS  98

Query  61   SRGVLILGATNIPWQLDAAIRRRFQRRVHISL  92
            +  V+++ ATN P +LD A+  RF R +   L
Sbjct  99   NSKVIVIAATNRPDKLDPALLGRFDRIIEFPL  130



Lambda      K        H        a         alpha
   0.318    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00022208

Length=229
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462762 pfam09336, Vps4_C, Vps4 C terminal oligomerization dom...  129     1e-39
CDD:459627 pfam00004, AAA, ATPase family associated with various ...  117     2e-34


>CDD:462762 pfam09336, Vps4_C, Vps4 C terminal oligomerization domain.  This 
domain is found at the C terminal of ATPase proteins involved 
in vacuolar sorting. It forms an alpha helix structure 
and is required for oligomerization.
Length=61

 Score = 129 bits (326),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 42/61 (69%), Positives = 56/61 (92%), Gaps = 0/61 (0%)

Query  165  LTPCSPGDSGAIEMSWVDIEADQLLEPPLMLKDFIKAVRNSRPTVSQEDLQRNAEWTKEF  224
            LTPCSPGD GAIEM+W+DI +D+LLEPP+ +KDF+KA+++SRPTVS+EDL++  E+TKEF
Sbjct  1    LTPCSPGDPGAIEMTWMDIPSDKLLEPPVTMKDFLKALKSSRPTVSKEDLEKYEEFTKEF  60

Query  225  G  225
            G
Sbjct  61   G  61


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 117 bits (296),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 59/92 (64%), Gaps = 0/92 (0%)

Query  1    MGESERLVKQLFNMARENKPAIIFIDEVDALCGPRGEGESEASRRIKTELLVQMDGVGKD  60
            +GESE+ +++LF  A++  P +IFIDE+DAL G RG G    SRR+  +LL ++DG    
Sbjct  39   VGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSS  98

Query  61   SRGVLILGATNIPWQLDAAIRRRFQRRVHISL  92
            +  V+++ ATN P +LD A+  RF R +   L
Sbjct  99   NSKVIVIAATNRPDKLDPALLGRFDRIIEFPL  130



Lambda      K        H        a         alpha
   0.318    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00022209

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462762 pfam09336, Vps4_C, Vps4 C terminal oligomerization dom...  128     1e-39
CDD:459627 pfam00004, AAA, ATPase family associated with various ...  101     3e-28


>CDD:462762 pfam09336, Vps4_C, Vps4 C terminal oligomerization domain.  This 
domain is found at the C terminal of ATPase proteins involved 
in vacuolar sorting. It forms an alpha helix structure 
and is required for oligomerization.
Length=61

 Score = 128 bits (325),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 42/61 (69%), Positives = 56/61 (92%), Gaps = 0/61 (0%)

Query  152  LTPCSPGDSGAIEMSWVDIEADQLLEPPLMLKDFIKAVRNSRPTVSQEDLQRNAEWTKEF  211
            LTPCSPGD GAIEM+W+DI +D+LLEPP+ +KDF+KA+++SRPTVS+EDL++  E+TKEF
Sbjct  1    LTPCSPGDPGAIEMTWMDIPSDKLLEPPVTMKDFLKALKSSRPTVSKEDLEKYEEFTKEF  60

Query  212  G  212
            G
Sbjct  61   G  61


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 101 bits (254),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 33/79 (42%), Positives = 48/79 (61%), Gaps = 0/79 (0%)

Query  1    MARENKPAIIFIDEVDALCGPRGEGESEASRRIKTELLVQMDGVGKDSRGVLILGATNIP  60
             A++  P +IFIDE+DAL G RG G    SRR+  +LL ++DG    +  V+++ ATN P
Sbjct  52   AAKKLAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRP  111

Query  61   WQLDAAIRRRFQRRVHISL  79
             +LD A+  RF R +   L
Sbjct  112  DKLDPALLGRFDRIIEFPL  130



Lambda      K        H        a         alpha
   0.318    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00022210

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462762 pfam09336, Vps4_C, Vps4 C terminal oligomerization dom...  128     1e-39
CDD:459627 pfam00004, AAA, ATPase family associated with various ...  101     3e-28


>CDD:462762 pfam09336, Vps4_C, Vps4 C terminal oligomerization domain.  This 
domain is found at the C terminal of ATPase proteins involved 
in vacuolar sorting. It forms an alpha helix structure 
and is required for oligomerization.
Length=61

 Score = 128 bits (325),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 42/61 (69%), Positives = 56/61 (92%), Gaps = 0/61 (0%)

Query  152  LTPCSPGDSGAIEMSWVDIEADQLLEPPLMLKDFIKAVRNSRPTVSQEDLQRNAEWTKEF  211
            LTPCSPGD GAIEM+W+DI +D+LLEPP+ +KDF+KA+++SRPTVS+EDL++  E+TKEF
Sbjct  1    LTPCSPGDPGAIEMTWMDIPSDKLLEPPVTMKDFLKALKSSRPTVSKEDLEKYEEFTKEF  60

Query  212  G  212
            G
Sbjct  61   G  61


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 101 bits (254),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 33/79 (42%), Positives = 48/79 (61%), Gaps = 0/79 (0%)

Query  1    MARENKPAIIFIDEVDALCGPRGEGESEASRRIKTELLVQMDGVGKDSRGVLILGATNIP  60
             A++  P +IFIDE+DAL G RG G    SRR+  +LL ++DG    +  V+++ ATN P
Sbjct  52   AAKKLAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRP  111

Query  61   WQLDAAIRRRFQRRVHISL  79
             +LD A+  RF R +   L
Sbjct  112  DKLDPALLGRFDRIIEFPL  130



Lambda      K        H        a         alpha
   0.318    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00026990

Length=229
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462762 pfam09336, Vps4_C, Vps4 C terminal oligomerization dom...  129     1e-39
CDD:459627 pfam00004, AAA, ATPase family associated with various ...  117     2e-34


>CDD:462762 pfam09336, Vps4_C, Vps4 C terminal oligomerization domain.  This 
domain is found at the C terminal of ATPase proteins involved 
in vacuolar sorting. It forms an alpha helix structure 
and is required for oligomerization.
Length=61

 Score = 129 bits (326),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 42/61 (69%), Positives = 56/61 (92%), Gaps = 0/61 (0%)

Query  165  LTPCSPGDSGAIEMSWVDIEADQLLEPPLMLKDFIKAVRNSRPTVSQEDLQRNAEWTKEF  224
            LTPCSPGD GAIEM+W+DI +D+LLEPP+ +KDF+KA+++SRPTVS+EDL++  E+TKEF
Sbjct  1    LTPCSPGDPGAIEMTWMDIPSDKLLEPPVTMKDFLKALKSSRPTVSKEDLEKYEEFTKEF  60

Query  225  G  225
            G
Sbjct  61   G  61


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 117 bits (296),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 59/92 (64%), Gaps = 0/92 (0%)

Query  1    MGESERLVKQLFNMARENKPAIIFIDEVDALCGPRGEGESEASRRIKTELLVQMDGVGKD  60
            +GESE+ +++LF  A++  P +IFIDE+DAL G RG G    SRR+  +LL ++DG    
Sbjct  39   VGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSS  98

Query  61   SRGVLILGATNIPWQLDAAIRRRFQRRVHISL  92
            +  V+++ ATN P +LD A+  RF R +   L
Sbjct  99   NSKVIVIAATNRPDKLDPALLGRFDRIIEFPL  130



Lambda      K        H        a         alpha
   0.318    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00022211

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462089 pfam07093, SGT1, SGT1 protein. This family consists of...  293     7e-92


>CDD:462089 pfam07093, SGT1, SGT1 protein.  This family consists of several 
eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known to 
suppress GCR2 and is highly expressed in the muscle and heart. 
The function of this family is unknown although it has been 
speculated that SGT1 may be functionally analogous to the 
Gcr2p protein of Saccharomyces cerevisiae which is known to 
be a regulatory factor of glycolytic gene expression.
Length=586

 Score = 293 bits (752),  Expect = 7e-92, Method: Composition-based stats.
 Identities = 170/619 (27%), Positives = 268/619 (43%), Gaps = 128/619 (21%)

Query  29   VEYCIYYIPSNPAPAINDETTETRSRLMEVQRSAAELTKEYLKDYIWQREGFKLEITKED  88
            VEY ++  P + +        ++  +L E+      +    L  YIWQ + F L      
Sbjct  1    VEYRLFPDPDDSSD-----PEKSEEQLQELLLQILAIVAPLLVQYIWQNQPFNLSYRPGK  55

Query  89   G-IMA-LRGRTNYGDSIEDEWVIVYLLRELTKKHQDIWVKVVDSDGQFLLVEAAGALPAW  146
            G +   L G T++GD+IEDEW IVYLL ++TK   ++  +V D+DG+FLL+EAA  LP W
Sbjct  56   GDLPPHLGGVTHFGDNIEDEWFIVYLLFQITKAFPELIARVEDNDGEFLLIEAADHLPKW  115

Query  147  LEPEIADNRVWIHQGELVII-KPK--NDRGRKVTEKLSLADSIRIIKEEPKRLLRSTMIQ  203
            L P+ ++NRV+I++GEL II  P+  ++ G       SL+ ++ ++   P+    S  IQ
Sbjct  116  LNPDTSENRVFIYRGELHIIPLPRKPSEVGFLPDGVPSLSQALALLSSHPELTRASESIQ  175

Query  204  EEAFYRLRNYPKQINENLHSALVTIPRKVAFLLHQKPAYISAAVEAFYLRDPIALRPLRS  263
                 R++ YP++I  NLH A   +P  VA +L Q+P+ I+ AV+AFYLRDP+ L+  R 
Sbjct  176  SAIKKRIKGYPEKIQANLHRAHCYVPAGVAAVLKQRPSLIAPAVQAFYLRDPVDLKACR-  234

Query  264  KDASTF-IFKPEDFVTVSVRFTRVGYAQLKSQDFPAPKSWIGKLPPRNDRIAFDRAEVGM  322
                T   F PE  V  SV FTR  YAQL  Q F   +     LPPR+    +   E+GM
Sbjct  235  ----TMKTFPPETRVMTSVTFTRCLYAQLVQQKFTPDRRSGYTLPPRSHP-QYKAHELGM  289

Query  323  KLSCGFEMLLTD---PQNQDKASV--------------------------REMKLLLE--  351
            KL+ GFE+L +    P ++D + V                           E K LLE  
Sbjct  290  KLAHGFEILCSKCKRPSSEDDSPVTKDPLWKAYLESLKKNGYFKGELEGSAEYKELLESA  349

Query  352  --------DVDSGDERLPTDE--EISR----WD----KRQ-------DDEKWLDISFEDL  386
                       S     P +E  ++ +    +     K++       DD+ WL IS E+L
Sbjct  350  EEYFQQSVTSSSSSASSPGEEILQLLQSALPFSLEELKKEENNLPPEDDDSWLYISPEEL  409

Query  387  DRELKGKDKSKASDGQARGAFGDAT-AQENLQRIVAQFEKFLNDDSAGFEGADFIDDFGS  445
            D  L+ +          +        A  +L  +    + F++  S   EGA+F      
Sbjct  410  DSMLQERYGEMELYNSKKKDSSKEEEANYDLGAVSKSMKAFVDKVS-SHEGAEFPWS---  465

Query  446  DSGIDDDVDDEVSDEGEDKEASFDEEEFSRMMKEMMGLPP----SDPGLQGASRQPPAPH  501
                            ++K  SFD + F   ++ ++G            + +S       
Sbjct  466  ---------------RDEKPVSFDPDSFMSALESILGFKIPEELDSDDEEDSS-------  503

Query  502  GRIEELDSESEDD--------------LEEIQKLSAQMEAELRGTGVLDLNRPKKS-STA  546
               ++ D E ++D              L  I+    QM+ EL  T V       KS +  
Sbjct  504  ---DDSDYEDDEDESDIEEEESNGSETLNSIKSYMDQMDQELAQTTV------GKSFTKK  554

Query  547  QQVISNASQKEPGDETEQS  565
                ++  +      T++S
Sbjct  555  NSQKNDLKKNSSTSNTDES  573



Lambda      K        H        a         alpha
   0.314    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 781585844


Query= TCONS_00026992

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00026993

Length=319


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00026994

Length=97
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460628 pfam02627, CMD, Carboxymuconolactone decarboxylase fam...  70.4    3e-18


>CDD:460628 pfam02627, CMD, Carboxymuconolactone decarboxylase family.  Carboxymuconolactone 
decarboxylase (CMD) EC:4.1.1.44 is involved 
in protocatechuate catabolism. In some bacteria a gene fusion 
event leads to expression of CMD with a hydrolase involved 
in the same pathway. In these bifunctional proteins CMD 
represents the C-terminal domain, pfam00561 represents the 
N-terminal domain.
Length=84

 Score = 70.4 bits (173),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 28/83 (34%), Positives = 38/83 (46%), Gaps = 1/83 (1%)

Query  1   MQELVTEACWGAVWSRPGLDRKSRSLLNTGMLCALNRGAELAVHVRGALNNGLSEVEIRE  60
           +   +T   +G +W   GLD K+R L+   +  A      L  H R AL  G++E EI E
Sbjct  3   LLAALTALAFGLLW-DGGLDPKTRELIALAVSAANGCAYCLDAHTRAALKAGVTEEEIAE  61

Query  61  ALLQVAIYVGMPAGLEGFRIAEK  83
            L   A Y G PA       AE+
Sbjct  62  VLAWAAAYAGGPAARAALAAAEE  84



Lambda      K        H        a         alpha
   0.317    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00022213

Length=104
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460628 pfam02627, CMD, Carboxymuconolactone decarboxylase fam...  72.0    1e-18


>CDD:460628 pfam02627, CMD, Carboxymuconolactone decarboxylase family.  Carboxymuconolactone 
decarboxylase (CMD) EC:4.1.1.44 is involved 
in protocatechuate catabolism. In some bacteria a gene fusion 
event leads to expression of CMD with a hydrolase involved 
in the same pathway. In these bifunctional proteins CMD 
represents the C-terminal domain, pfam00561 represents the 
N-terminal domain.
Length=84

 Score = 72.0 bits (177),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 28/83 (34%), Positives = 38/83 (46%), Gaps = 1/83 (1%)

Query  1   MQELVTEACWGAVWSRPGLDRKSRSLLNTGMLCALNRGAELAVHVRGALNNGLSEVEIRE  60
           +   +T   +G +W   GLD K+R L+   +  A      L  H R AL  G++E EI E
Sbjct  3   LLAALTALAFGLLW-DGGLDPKTRELIALAVSAANGCAYCLDAHTRAALKAGVTEEEIAE  61

Query  61  ALLQVAIYVGMPAGLEGFRIAEK  83
            L   A Y G PA       AE+
Sbjct  62  VLAWAAAYAGGPAARAALAAAEE  84



Lambda      K        H        a         alpha
   0.318    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00022215

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00022216

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  118     6e-33


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 118 bits (299),  Expect = 6e-33, Method: Composition-based stats.
 Identities = 58/146 (40%), Positives = 75/146 (51%), Gaps = 11/146 (8%)

Query  27   ASAVVYPGSTEEVQKIVHWANKHVIPLHPISMGRNFGYGGAAPWVRGAVVVDLGKRMNRI  86
             +AVV P S EEV  IV  AN++ +P+ P   G +   GGA     G +V+DL  R+N I
Sbjct  1    PAAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLL-GGAVQ--TGGIVLDLS-RLNGI  56

Query  87   LDINPEDCTCLVEPGVSYYALYEEIQRRGYKHLWIDVPDLG----GGSVLGNALDHGVGY  142
            L+I+PED T  VE GV+   L   +  +G   L +D         GG++  NA   G G 
Sbjct  57   LEIDPEDGTATVEAGVTLGDLVRALAAKGLL-LGLDPGSGIPGTVGGAIATNA--GGYGS  113

Query  143  TPYGDHWAMHSGLEVVTPTGEVVRTG  168
              YG       GLEVV   GEVVR G
Sbjct  114  EKYGLTRDNVLGLEVVLADGEVVRLG  139



Lambda      K        H        a         alpha
   0.320    0.139    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 481536020


Query= TCONS_00026996

Length=224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  111     7e-32


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 111 bits (280),  Expect = 7e-32, Method: Composition-based stats.
 Identities = 58/146 (40%), Positives = 75/146 (51%), Gaps = 11/146 (8%)

Query  11   ASAVVYPGSTEEVQKIVHWANKHVIPLHPISMGRNFGYGGAAPWVRGAVVVDLGKRMNRI  70
             +AVV P S EEV  IV  AN++ +P+ P   G +   GGA     G +V+DL  R+N I
Sbjct  1    PAAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLL-GGAVQ--TGGIVLDLS-RLNGI  56

Query  71   LDINPEDCTCLVEPGVSYYALYEEIQRRGYKHLWIDVPDLG----GGSVLGNALDHGVGY  126
            L+I+PED T  VE GV+   L   +  +G   L +D         GG++  NA   G G 
Sbjct  57   LEIDPEDGTATVEAGVTLGDLVRALAAKGLL-LGLDPGSGIPGTVGGAIATNA--GGYGS  113

Query  127  TPYGDHWAMHSGLEVVTPTGEVVRTG  152
              YG       GLEVV   GEVVR G
Sbjct  114  EKYGLTRDNVLGLEVVLADGEVVRLG  139



Lambda      K        H        a         alpha
   0.319    0.139    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00022218

Length=117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  58.4    3e-12


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 58.4 bits (142),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query  1    MLCIHAVLPGMVEQKSGCIINMASRAATVDGPKSVGYNASKAALVRATGSLQEDLASMGL  60
                 AVLP M++   G I+N++S A  V  P    Y+ASKAA++  T SL  +LA  G 
Sbjct  113  FNLTRAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHG-  171

Query  61   GEQVHTYCLHPGSV  74
               +    + PG V
Sbjct  172  ---IRVNAVAPGGV  182



Lambda      K        H        a         alpha
   0.318    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00022219

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  80.1    9e-18


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 80.1 bits (198),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 109/290 (38%), Gaps = 28/290 (10%)

Query  2    LSRQAIPVTVLEAAEQLDTRPRATHYGSPAVYE-LRRAGVLPDVLAEGFTPGVICWRKLY  60
            L+R  + V ++E        PRA H  +    E LR+AG+   +LAEG     +     +
Sbjct  20   LARAGVRVVLVERHATTSVLPRA-HGLNQRTMELLRQAGLEDRILAEGVPHEGM--GLAF  76

Query  61   GTYLAGIDNRIMANDPDQVACLPLGRLGQILLDHLARQPSAEIKWNHRVTGLGQDPD--Q  118
                   D   + + P +V   P   L  IL++H   +  A++++   V  L QD D   
Sbjct  77   YNTRRRADLDFLTS-PPRVTVYPQTELEPILVEHAEARG-AQVRFGTEVLSLEQDGDGVT  134

Query  119  AWVTVATPTGEVTMQATYIVGCDGANSQIRRSL-FGDGVFPGKTWDEQIVATNVYYDFHQ  177
            A V       E T++A Y+VGCDG  S +R++L      F G  +   +       D   
Sbjct  135  AVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKTLGIEFEGFEGVPFGS-LDVLFDAPDLSD  193

Query  178  FGYEDAN--FIIHPEHWYMASRITKDG-----LWRVSYGEKGG-----LTHEQLAERQPK  225
                      I  P          +         +V + E+        T E+L +R   
Sbjct  194  PVERAFVHYLIYAPHSRGFMVGPWRSAGRERYYVQVPWDEEVEERPEEFTDEELKQRLRS  253

Query  226  KFQAMLPGHPTPDQYRLVNFSPYRVHQRLAEKMRVGRFLLAADAAHLCNP  275
                 L              S + V  R+A + R GR  LA DAAH+  P
Sbjct  254  IVGIDLALVE-ILW-----KSIWGVASRVATRYRKGRVFLAGDAAHIHPP  297



Lambda      K        H        a         alpha
   0.322    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00026997

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  141     6e-41
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  112     8e-30


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 141 bits (358),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 66/190 (35%), Positives = 92/190 (48%), Gaps = 21/190 (11%)

Query  13   KVAVVTGAGRG-------------ATLALIDVDVEALETTKAAAHNVQDRQSHVETYGLD  59
            KVA+VTGA  G             A + L+D   E LE        +  +         D
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGK---ALFIQGD  57

Query  60   ITDPGAVQSTFKSIAATLGRVDILVNNAGITRLHLFAEEEGFDDFWRTVEVNFKGTMLCI  119
            +TD   V++  +     LGR+DILVNNAGIT L  F+E    +D+ R ++VN  G     
Sbjct  58   VTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELS-DEDWERVIDVNLTGVFNLT  116

Query  120  HAVLPGMVEQKSGCIINMASRAATVDGPKSVGYNASKAALVRATGSLQEDLASMGLGEQV  179
             AVLP M++   G I+N++S A  V  P    Y+ASKAA++  T SL  +LA  G    +
Sbjct  117  RAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHG----I  172

Query  180  HTYCLHPGSV  189
                + PG V
Sbjct  173  RVNAVAPGGV  182


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 112 bits (284),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 88/214 (41%), Gaps = 23/214 (11%)

Query  20   AGRGATLALIDVDVEALETTKAAAHNVQDRQSHVETYGLDITDPGAVQSTFKSIAATLGR  79
            A  GA + L D++    +  +  A      +        D+TD   V++   +     GR
Sbjct  17   AEEGAEVVLTDLNEALAKRVEELA-----EELGAAVLPCDVTDEEQVEALVAAAVEKFGR  71

Query  80   VDILVNNAGITRLHL--FAE--EEGFDDFWRTVEVNFKGTMLCIHAVLPGMVEQKSGCII  135
            +DILVNNAG        F +   E FD   R ++VN     L   A LP M E   G I+
Sbjct  72   LDILVNNAGFAPKLKGPFLDTSREDFD---RALDVNLYSLFLLAKAALPLMKEG--GSIV  126

Query  136  NMASRAATVDGPKSVGYNASKAALVRATGSLQEDLASMGLGEQVHTYCLHPGSV----WG  191
            N++S  A    P    Y A+KAAL   T  L  +L   G+  +V+   + PG +      
Sbjct  127  NLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGI--RVN--AISPGPIKTLAAS  182

Query  192  DILTGNTTAEQQEQLPPIFKDV-PELAAGTVAYL  224
             I   +      E   P+ +   PE  A   A+L
Sbjct  183  GIPGFDELLAAAEARAPLGRLGTPEEVANAAAFL  216



Lambda      K        H        a         alpha
   0.316    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00026998

Length=117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  58.4    3e-12


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 58.4 bits (142),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query  1    MLCIHAVLPGMVEQKSGCIINMASRAATVDGPKSVGYNASKAALVRATGSLQEDLASMGL  60
                 AVLP M++   G I+N++S A  V  P    Y+ASKAA++  T SL  +LA  G 
Sbjct  113  FNLTRAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHG-  171

Query  61   GEQVHTYCLHPGSV  74
               +    + PG V
Sbjct  172  ---IRVNAVAPGGV  182



Lambda      K        H        a         alpha
   0.318    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00026999

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  137     3e-40
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  110     1e-29


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 137 bits (347),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 66/190 (35%), Positives = 92/190 (48%), Gaps = 21/190 (11%)

Query  13   KVAVVTGAGRG-------------ATLALIDVDVEALETTKAAAHNVQDRQSHVETYGLD  59
            KVA+VTGA  G             A + L+D   E LE        +  +         D
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGK---ALFIQGD  57

Query  60   ITDPGAVQSTFKSIAATLGRVDILVNNAGITRLHLFAEEEGFDDFWRTVEVNFKGTMLCI  119
            +TD   V++  +     LGR+DILVNNAGIT L  F+E    +D+ R ++VN  G     
Sbjct  58   VTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELS-DEDWERVIDVNLTGVFNLT  116

Query  120  HAVLPGMVEQKSGCIINMASRAATVDGPKSVGYNASKAALVRATGSLQEDLASMGLGEQV  179
             AVLP M++   G I+N++S A  V  P    Y+ASKAA++  T SL  +LA  G    +
Sbjct  117  RAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHG----I  172

Query  180  HTYCLHPGSV  189
                + PG V
Sbjct  173  RVNAVAPGGV  182


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 110 bits (278),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 88/214 (41%), Gaps = 23/214 (11%)

Query  20   AGRGATLALIDVDVEALETTKAAAHNVQDRQSHVETYGLDITDPGAVQSTFKSIAATLGR  79
            A  GA + L D++    +  +  A      +        D+TD   V++   +     GR
Sbjct  17   AEEGAEVVLTDLNEALAKRVEELA-----EELGAAVLPCDVTDEEQVEALVAAAVEKFGR  71

Query  80   VDILVNNAGITRLHL--FAE--EEGFDDFWRTVEVNFKGTMLCIHAVLPGMVEQKSGCII  135
            +DILVNNAG        F +   E FD   R ++VN     L   A LP M E   G I+
Sbjct  72   LDILVNNAGFAPKLKGPFLDTSREDFD---RALDVNLYSLFLLAKAALPLMKEG--GSIV  126

Query  136  NMASRAATVDGPKSVGYNASKAALVRATGSLQEDLASMGLGEQVHTYCLHPGSV----WG  191
            N++S  A    P    Y A+KAAL   T  L  +L   G+  +V+   + PG +      
Sbjct  127  NLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGI--RVN--AISPGPIKTLAAS  182

Query  192  DILTGNTTAEQQEQLPPIFKDV-PELAAGTVAYL  224
             I   +      E   P+ +   PE  A   A+L
Sbjct  183  GIPGFDELLAAAEARAPLGRLGTPEEVANAAAFL  216



Lambda      K        H        a         alpha
   0.319    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00022222

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  80.1    9e-18


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 80.1 bits (198),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 109/290 (38%), Gaps = 28/290 (10%)

Query  2    LSRQAIPVTVLEAAEQLDTRPRATHYGSPAVYE-LRRAGVLPDVLAEGFTPGVICWRKLY  60
            L+R  + V ++E        PRA H  +    E LR+AG+   +LAEG     +     +
Sbjct  20   LARAGVRVVLVERHATTSVLPRA-HGLNQRTMELLRQAGLEDRILAEGVPHEGM--GLAF  76

Query  61   GTYLAGIDNRIMANDPDQVACLPLGRLGQILLDHLARQPSAEIKWNHRVTGLGQDPD--Q  118
                   D   + + P +V   P   L  IL++H   +  A++++   V  L QD D   
Sbjct  77   YNTRRRADLDFLTS-PPRVTVYPQTELEPILVEHAEARG-AQVRFGTEVLSLEQDGDGVT  134

Query  119  AWVTVATPTGEVTMQATYIVGCDGANSQIRRSL-FGDGVFPGKTWDEQIVATNVYYDFHQ  177
            A V       E T++A Y+VGCDG  S +R++L      F G  +   +       D   
Sbjct  135  AVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKTLGIEFEGFEGVPFGS-LDVLFDAPDLSD  193

Query  178  FGYEDAN--FIIHPEHWYMASRITKDG-----LWRVSYGEKGG-----LTHEQLAERQPK  225
                      I  P          +         +V + E+        T E+L +R   
Sbjct  194  PVERAFVHYLIYAPHSRGFMVGPWRSAGRERYYVQVPWDEEVEERPEEFTDEELKQRLRS  253

Query  226  KFQAMLPGHPTPDQYRLVNFSPYRVHQRLAEKMRVGRFLLAADAAHLCNP  275
                 L              S + V  R+A + R GR  LA DAAH+  P
Sbjct  254  IVGIDLALVE-ILW-----KSIWGVASRVATRYRKGRVFLAGDAAHIHPP  297



Lambda      K        H        a         alpha
   0.322    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00027000

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  105     1e-26


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 105 bits (263),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 125/309 (40%), Gaps = 28/309 (9%)

Query  5    DFKIIVVGAGPAGLLLALMLSRQAIPVTVLEAAEQLDTRPRATHYGSPAVYE-LRRAGVL  63
            +  +++VG GPAGL+LAL+L+R  + V ++E        PRA H  +    E LR+AG+ 
Sbjct  1    ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRA-HGLNQRTMELLRQAGLE  59

Query  64   PDVLAEGFTPGVICWRKLYGTYLAGIDNRIMANDPDQVACLPLGRLGQILLDHLARQPSA  123
              +LAEG     +     +       D   + + P +V   P   L  IL++H   +  A
Sbjct  60   DRILAEGVPHEGM--GLAFYNTRRRADLDFLTS-PPRVTVYPQTELEPILVEHAEARG-A  115

Query  124  EIKWNHRVTGLGQDPD--QAWVTVATPTGEVTMQATYIVGCDGANSQIRRSL-FGDGVFP  180
            ++++   V  L QD D   A V       E T++A Y+VGCDG  S +R++L      F 
Sbjct  116  QVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKTLGIEFEGFE  175

Query  181  GKTWDEQIVATNVYYDFHQFGYEDAN--FIIHPEHWYMASRITKDG-----LWRVSYGEK  233
            G  +   +       D             I  P          +         +V + E+
Sbjct  176  GVPFGS-LDVLFDAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSAGRERYYVQVPWDEE  234

Query  234  GG-----LTHEQLAERQPKKFQAMLPGHPTPDQYRLVNFSPYRVHQRLAEKMRVGRFLLA  288
                    T E+L +R        L              S + V  R+A + R GR  LA
Sbjct  235  VEERPEEFTDEELKQRLRSIVGIDLALVE-ILW-----KSIWGVASRVATRYRKGRVFLA  288

Query  289  ADAAHLCNP  297
             DAAH+  P
Sbjct  289  GDAAHIHPP  297



Lambda      K        H        a         alpha
   0.322    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00022221

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  80.1    9e-18


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 80.1 bits (198),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 109/290 (38%), Gaps = 28/290 (10%)

Query  2    LSRQAIPVTVLEAAEQLDTRPRATHYGSPAVYE-LRRAGVLPDVLAEGFTPGVICWRKLY  60
            L+R  + V ++E        PRA H  +    E LR+AG+   +LAEG     +     +
Sbjct  20   LARAGVRVVLVERHATTSVLPRA-HGLNQRTMELLRQAGLEDRILAEGVPHEGM--GLAF  76

Query  61   GTYLAGIDNRIMANDPDQVACLPLGRLGQILLDHLARQPSAEIKWNHRVTGLGQDPD--Q  118
                   D   + + P +V   P   L  IL++H   +  A++++   V  L QD D   
Sbjct  77   YNTRRRADLDFLTS-PPRVTVYPQTELEPILVEHAEARG-AQVRFGTEVLSLEQDGDGVT  134

Query  119  AWVTVATPTGEVTMQATYIVGCDGANSQIRRSL-FGDGVFPGKTWDEQIVATNVYYDFHQ  177
            A V       E T++A Y+VGCDG  S +R++L      F G  +   +       D   
Sbjct  135  AVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKTLGIEFEGFEGVPFGS-LDVLFDAPDLSD  193

Query  178  FGYEDAN--FIIHPEHWYMASRITKDG-----LWRVSYGEKGG-----LTHEQLAERQPK  225
                      I  P          +         +V + E+        T E+L +R   
Sbjct  194  PVERAFVHYLIYAPHSRGFMVGPWRSAGRERYYVQVPWDEEVEERPEEFTDEELKQRLRS  253

Query  226  KFQAMLPGHPTPDQYRLVNFSPYRVHQRLAEKMRVGRFLLAADAAHLCNP  275
                 L              S + V  R+A + R GR  LA DAAH+  P
Sbjct  254  IVGIDLALVE-ILW-----KSIWGVASRVATRYRKGRVFLAGDAAHIHPP  297



Lambda      K        H        a         alpha
   0.322    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00022224

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  82.4    8e-19


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 82.4 bits (204),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 50/196 (26%), Positives = 69/196 (35%), Gaps = 20/196 (10%)

Query  3    ATYIVGCDGANSQIRRSL-FGDGVFPGKTWDEQIVATNVYYDFHQFGYEDAN--FIIHPE  59
            A Y+VGCDG  S +R++L      F G  +   +       D             I  P 
Sbjct  150  AKYLVGCDGGRSPVRKTLGIEFEGFEGVPFGS-LDVLFDAPDLSDPVERAFVHYLIYAPH  208

Query  60   HWYMASRITKDG-----LWRVSYGEKGG-----LTHEQLAERQPKKFQAMLPGHPTPDQY  109
                     +         +V + E+        T E+L +R        L         
Sbjct  209  SRGFMVGPWRSAGRERYYVQVPWDEEVEERPEEFTDEELKQRLRSIVGIDLALVE-ILW-  266

Query  110  RLVNFSPYRVHQRLAEKMRVGRFLLAADAAHLCNPFGGLGLTGGIADVGGLYDCLYGLYT  169
                 S + V  R+A + R GR  LA DAAH+  P GG GL   I D   L   L  +  
Sbjct  267  ----KSIWGVASRVATRYRKGRVFLAGDAAHIHPPTGGQGLNTAIQDAFNLAWKLAAVLR  322

Query  170  GRATPDILDMYDRVRR  185
            G+A   +LD Y   R 
Sbjct  323  GQAGESLLDTYSAERL  338



Lambda      K        H        a         alpha
   0.322    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00022225

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.492    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00022227

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  117     6e-33


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 117 bits (295),  Expect = 6e-33, Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 23/124 (19%)

Query  9    LTTTCGTPGYMAPEIFKKSGHGKPVYVFVRVLPLANLNSMADFPLRDIWAIGVITYFLLC  68
            LTT  GTP YMAPE+   + +G  V                     D+W++G I Y LL 
Sbjct  117  LTTFVGTPWYMAPEVLGGNPYGPKV---------------------DVWSLGCILYELLT  155

Query  69   GYTPFDRDSNLEEMQAILAADYSFTPLEYWRGVSQSARDFIKGCLTVDPKARMTAHEALQ  128
            G  PF   +  E  + I+   Y+F  L     +S+ A+D +K  L  DP  R+TA +ALQ
Sbjct  156  GKPPFPGINGNEIYELIIDQPYAFPEL--PSNLSEEAKDLLKKLLKKDPSKRLTATQALQ  213

Query  129  HPWI  132
            HPW 
Sbjct  214  HPWF  217



Lambda      K        H        a         alpha
   0.317    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00022226

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  117     6e-33


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 117 bits (295),  Expect = 6e-33, Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 23/124 (19%)

Query  9    LTTTCGTPGYMAPEIFKKSGHGKPVYVFVRVLPLANLNSMADFPLRDIWAIGVITYFLLC  68
            LTT  GTP YMAPE+   + +G  V                     D+W++G I Y LL 
Sbjct  117  LTTFVGTPWYMAPEVLGGNPYGPKV---------------------DVWSLGCILYELLT  155

Query  69   GYTPFDRDSNLEEMQAILAADYSFTPLEYWRGVSQSARDFIKGCLTVDPKARMTAHEALQ  128
            G  PF   +  E  + I+   Y+F  L     +S+ A+D +K  L  DP  R+TA +ALQ
Sbjct  156  GKPPFPGINGNEIYELIIDQPYAFPEL--PSNLSEEAKDLLKKLLKKDPSKRLTATQALQ  213

Query  129  HPWI  132
            HPW 
Sbjct  214  HPWF  217



Lambda      K        H        a         alpha
   0.317    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00022228

Length=1926
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462493 pfam08490, DUF1744, Domain of unknown function (DUF174...  628     0.0  
CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, ex...  150     4e-40


>CDD:462493 pfam08490, DUF1744, Domain of unknown function (DUF1744).  This 
domain is found on the epsilon catalytic subunit of DNA polymerase. 
It is found C terminal to pfam03104 and pfam00136.
Length=400

 Score = 628 bits (1623),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/402 (50%), Positives = 270/402 (67%), Gaps = 13/402 (3%)

Query  1219  VDKIYAELRARTMENMGGDQSQNAFEYQEKIHFKTTQVTTRRKAYLEIGDLIKKLKGEET  1278
             ++K+Y ELRA+ ++ +       AFEY E + F+ T  T  RKAY  +   + K K E++
Sbjct  1     LEKLYKELRAKKLDKLEKWSG--AFEYPEDMTFEVTYFTDERKAYKALSRALSKYKEEKS  58

Query  1279  QPVIMVIQSHQ-RHRLCHDIPILKEYPVLPVKPEVSDMDLPPLGWQSFIAKRLVTHYLYL  1337
              P ++V+QS +    L   IPIL E+PV+ +    +D  LP LGWQS +AKR+V HYL L
Sbjct  59    GPTLLVLQSPKDLSYLLSKIPILNEFPVVSIPSNDADSSLPALGWQSVVAKRMVNHYLSL  118

Query  1338  ASWIHHLTMLARYGDVPLCNLENDDPRYLIDISYARRLQQNNVVLWWSNGPRPDHAGYEK  1397
              SW+ HL  LARY D+PLCNLE+DDP +LIDI YARRL++NN+VLWWS  P PD  G EK
Sbjct  119   GSWLSHLIELARYFDIPLCNLESDDPLFLIDIFYARRLKKNNIVLWWSPSPLPDLGGREK  178

Query  1398  DD---VTGSLERVSMPSVNVPSAYNTVCIELEVRNLSINTILTSSIINELEGADTLLASS  1454
             DD     G +E +  P +N P AY+ VC+EL++RNL++NTIL S++INELEG+D   A  
Sbjct  179   DDNPNTLGLMEELDSPEINNPGAYSNVCLELDIRNLAVNTILQSALINELEGSDLSTAFD  238

Query  1455  -------EPSADANGSGVLYSEKAFASAGAVVLREMVKHWWSEACEGNNMADIMVQHLIR  1507
                    E S     S   Y E AF+SA   VLR MVK WW +A +GN  AD++V H +R
Sbjct  239   AASHTLDEYSKGDVNSSSTYDEDAFSSAAFRVLRSMVKSWWDDALKGNVFADLLVDHFVR  298

Query  1508  WVESPVSCLYDRSLHDYVRMLSRKSFQRLMAEFRRVGSNVIFASPTRLLLQTTKTEVGNA  1567
             WV+SP S LYD +LH +V  L +K+F +L+AEF+R+GS V++A   R+LLQT+K  V NA
Sbjct  299   WVQSPDSLLYDPALHRHVHNLMKKAFLQLLAEFKRLGSTVVYADFNRILLQTSKPSVENA  358

Query  1568  YAYSQYVLKSIRANASFHFIDLEIKEYWDYLVWYDEYNYGGK  1609
             YAYSQY++K+IR+   FHF+DL+I  YWDYL+W DE NYGG 
Sbjct  359   YAYSQYIVKAIRSKPLFHFLDLKIVRYWDYLLWMDEANYGGV  400


>CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease 
domain.  This domain has 3' to 5' exonuclease activity and 
adopts a ribonuclease H type fold.
Length=333

 Score = 150 bits (381),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 63/155 (41%), Positives = 82/155 (53%), Gaps = 24/155 (15%)

Query  1    MMISYMIDGQG-------FLITNREIVSEDIRDFEYTPKPEYSGPFMIFNEPNERSVIER  53
            + IS M+DGQG       FL T RE  SEDI DFEYTPKP Y G   +F  P+E+ ++ R
Sbjct  182  IQISCMLDGQGEPEPEPRFLFTLRECDSEDIEDFEYTPKPIYPGV-KVFEFPSEKELLRR  240

Query  54   FFEHIKEAKPTVIATYNGDFFDWPFVEARASVL--------------GIDMYKEIGFRKN  99
            FFE I++  P +I  YNGD FDWP++  RA  L              G    +EIGF   
Sbjct  241  FFEFIRQYDPDIITGYNGDNFDWPYILNRAKELYIVKLSSIGRLNRGGRSKVREIGFGTR  300

Query  100  SEDIYQSDHCVHMDCFAWVNRDSYLPQGSRGLKAV  134
            S +  +    +H+D +  + RD  LP  S  L AV
Sbjct  301  SYEKVKISGRLHLDLYRVIKRDYKLP--SYKLNAV  333



Lambda      K        H        a         alpha
   0.319    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2441953624


Query= TCONS_00022229

Length=1926
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462493 pfam08490, DUF1744, Domain of unknown function (DUF174...  628     0.0  
CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, ex...  150     4e-40


>CDD:462493 pfam08490, DUF1744, Domain of unknown function (DUF1744).  This 
domain is found on the epsilon catalytic subunit of DNA polymerase. 
It is found C terminal to pfam03104 and pfam00136.
Length=400

 Score = 628 bits (1623),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/402 (50%), Positives = 270/402 (67%), Gaps = 13/402 (3%)

Query  1219  VDKIYAELRARTMENMGGDQSQNAFEYQEKIHFKTTQVTTRRKAYLEIGDLIKKLKGEET  1278
             ++K+Y ELRA+ ++ +       AFEY E + F+ T  T  RKAY  +   + K K E++
Sbjct  1     LEKLYKELRAKKLDKLEKWSG--AFEYPEDMTFEVTYFTDERKAYKALSRALSKYKEEKS  58

Query  1279  QPVIMVIQSHQ-RHRLCHDIPILKEYPVLPVKPEVSDMDLPPLGWQSFIAKRLVTHYLYL  1337
              P ++V+QS +    L   IPIL E+PV+ +    +D  LP LGWQS +AKR+V HYL L
Sbjct  59    GPTLLVLQSPKDLSYLLSKIPILNEFPVVSIPSNDADSSLPALGWQSVVAKRMVNHYLSL  118

Query  1338  ASWIHHLTMLARYGDVPLCNLENDDPRYLIDISYARRLQQNNVVLWWSNGPRPDHAGYEK  1397
              SW+ HL  LARY D+PLCNLE+DDP +LIDI YARRL++NN+VLWWS  P PD  G EK
Sbjct  119   GSWLSHLIELARYFDIPLCNLESDDPLFLIDIFYARRLKKNNIVLWWSPSPLPDLGGREK  178

Query  1398  DD---VTGSLERVSMPSVNVPSAYNTVCIELEVRNLSINTILTSSIINELEGADTLLASS  1454
             DD     G +E +  P +N P AY+ VC+EL++RNL++NTIL S++INELEG+D   A  
Sbjct  179   DDNPNTLGLMEELDSPEINNPGAYSNVCLELDIRNLAVNTILQSALINELEGSDLSTAFD  238

Query  1455  -------EPSADANGSGVLYSEKAFASAGAVVLREMVKHWWSEACEGNNMADIMVQHLIR  1507
                    E S     S   Y E AF+SA   VLR MVK WW +A +GN  AD++V H +R
Sbjct  239   AASHTLDEYSKGDVNSSSTYDEDAFSSAAFRVLRSMVKSWWDDALKGNVFADLLVDHFVR  298

Query  1508  WVESPVSCLYDRSLHDYVRMLSRKSFQRLMAEFRRVGSNVIFASPTRLLLQTTKTEVGNA  1567
             WV+SP S LYD +LH +V  L +K+F +L+AEF+R+GS V++A   R+LLQT+K  V NA
Sbjct  299   WVQSPDSLLYDPALHRHVHNLMKKAFLQLLAEFKRLGSTVVYADFNRILLQTSKPSVENA  358

Query  1568  YAYSQYVLKSIRANASFHFIDLEIKEYWDYLVWYDEYNYGGK  1609
             YAYSQY++K+IR+   FHF+DL+I  YWDYL+W DE NYGG 
Sbjct  359   YAYSQYIVKAIRSKPLFHFLDLKIVRYWDYLLWMDEANYGGV  400


>CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease 
domain.  This domain has 3' to 5' exonuclease activity and 
adopts a ribonuclease H type fold.
Length=333

 Score = 150 bits (381),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 63/155 (41%), Positives = 82/155 (53%), Gaps = 24/155 (15%)

Query  1    MMISYMIDGQG-------FLITNREIVSEDIRDFEYTPKPEYSGPFMIFNEPNERSVIER  53
            + IS M+DGQG       FL T RE  SEDI DFEYTPKP Y G   +F  P+E+ ++ R
Sbjct  182  IQISCMLDGQGEPEPEPRFLFTLRECDSEDIEDFEYTPKPIYPGV-KVFEFPSEKELLRR  240

Query  54   FFEHIKEAKPTVIATYNGDFFDWPFVEARASVL--------------GIDMYKEIGFRKN  99
            FFE I++  P +I  YNGD FDWP++  RA  L              G    +EIGF   
Sbjct  241  FFEFIRQYDPDIITGYNGDNFDWPYILNRAKELYIVKLSSIGRLNRGGRSKVREIGFGTR  300

Query  100  SEDIYQSDHCVHMDCFAWVNRDSYLPQGSRGLKAV  134
            S +  +    +H+D +  + RD  LP  S  L AV
Sbjct  301  SYEKVKISGRLHLDLYRVIKRDYKLP--SYKLNAV  333



Lambda      K        H        a         alpha
   0.319    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2441953624


Query= TCONS_00027002

Length=1926
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462493 pfam08490, DUF1744, Domain of unknown function (DUF174...  628     0.0  
CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, ex...  150     4e-40


>CDD:462493 pfam08490, DUF1744, Domain of unknown function (DUF1744).  This 
domain is found on the epsilon catalytic subunit of DNA polymerase. 
It is found C terminal to pfam03104 and pfam00136.
Length=400

 Score = 628 bits (1623),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/402 (50%), Positives = 270/402 (67%), Gaps = 13/402 (3%)

Query  1219  VDKIYAELRARTMENMGGDQSQNAFEYQEKIHFKTTQVTTRRKAYLEIGDLIKKLKGEET  1278
             ++K+Y ELRA+ ++ +       AFEY E + F+ T  T  RKAY  +   + K K E++
Sbjct  1     LEKLYKELRAKKLDKLEKWSG--AFEYPEDMTFEVTYFTDERKAYKALSRALSKYKEEKS  58

Query  1279  QPVIMVIQSHQ-RHRLCHDIPILKEYPVLPVKPEVSDMDLPPLGWQSFIAKRLVTHYLYL  1337
              P ++V+QS +    L   IPIL E+PV+ +    +D  LP LGWQS +AKR+V HYL L
Sbjct  59    GPTLLVLQSPKDLSYLLSKIPILNEFPVVSIPSNDADSSLPALGWQSVVAKRMVNHYLSL  118

Query  1338  ASWIHHLTMLARYGDVPLCNLENDDPRYLIDISYARRLQQNNVVLWWSNGPRPDHAGYEK  1397
              SW+ HL  LARY D+PLCNLE+DDP +LIDI YARRL++NN+VLWWS  P PD  G EK
Sbjct  119   GSWLSHLIELARYFDIPLCNLESDDPLFLIDIFYARRLKKNNIVLWWSPSPLPDLGGREK  178

Query  1398  DD---VTGSLERVSMPSVNVPSAYNTVCIELEVRNLSINTILTSSIINELEGADTLLASS  1454
             DD     G +E +  P +N P AY+ VC+EL++RNL++NTIL S++INELEG+D   A  
Sbjct  179   DDNPNTLGLMEELDSPEINNPGAYSNVCLELDIRNLAVNTILQSALINELEGSDLSTAFD  238

Query  1455  -------EPSADANGSGVLYSEKAFASAGAVVLREMVKHWWSEACEGNNMADIMVQHLIR  1507
                    E S     S   Y E AF+SA   VLR MVK WW +A +GN  AD++V H +R
Sbjct  239   AASHTLDEYSKGDVNSSSTYDEDAFSSAAFRVLRSMVKSWWDDALKGNVFADLLVDHFVR  298

Query  1508  WVESPVSCLYDRSLHDYVRMLSRKSFQRLMAEFRRVGSNVIFASPTRLLLQTTKTEVGNA  1567
             WV+SP S LYD +LH +V  L +K+F +L+AEF+R+GS V++A   R+LLQT+K  V NA
Sbjct  299   WVQSPDSLLYDPALHRHVHNLMKKAFLQLLAEFKRLGSTVVYADFNRILLQTSKPSVENA  358

Query  1568  YAYSQYVLKSIRANASFHFIDLEIKEYWDYLVWYDEYNYGGK  1609
             YAYSQY++K+IR+   FHF+DL+I  YWDYL+W DE NYGG 
Sbjct  359   YAYSQYIVKAIRSKPLFHFLDLKIVRYWDYLLWMDEANYGGV  400


>CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease 
domain.  This domain has 3' to 5' exonuclease activity and 
adopts a ribonuclease H type fold.
Length=333

 Score = 150 bits (381),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 63/155 (41%), Positives = 82/155 (53%), Gaps = 24/155 (15%)

Query  1    MMISYMIDGQG-------FLITNREIVSEDIRDFEYTPKPEYSGPFMIFNEPNERSVIER  53
            + IS M+DGQG       FL T RE  SEDI DFEYTPKP Y G   +F  P+E+ ++ R
Sbjct  182  IQISCMLDGQGEPEPEPRFLFTLRECDSEDIEDFEYTPKPIYPGV-KVFEFPSEKELLRR  240

Query  54   FFEHIKEAKPTVIATYNGDFFDWPFVEARASVL--------------GIDMYKEIGFRKN  99
            FFE I++  P +I  YNGD FDWP++  RA  L              G    +EIGF   
Sbjct  241  FFEFIRQYDPDIITGYNGDNFDWPYILNRAKELYIVKLSSIGRLNRGGRSKVREIGFGTR  300

Query  100  SEDIYQSDHCVHMDCFAWVNRDSYLPQGSRGLKAV  134
            S +  +    +H+D +  + RD  LP  S  L AV
Sbjct  301  SYEKVKISGRLHLDLYRVIKRDYKLP--SYKLNAV  333



Lambda      K        H        a         alpha
   0.319    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2441953624


Query= TCONS_00027001

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462493 pfam08490, DUF1744, Domain of unknown function (DUF174...  350     1e-117


>CDD:462493 pfam08490, DUF1744, Domain of unknown function (DUF1744).  This 
domain is found on the epsilon catalytic subunit of DNA polymerase. 
It is found C terminal to pfam03104 and pfam00136.
Length=400

 Score = 350 bits (901),  Expect = 1e-117, Method: Composition-based stats.
 Identities = 109/208 (52%), Positives = 145/208 (70%), Gaps = 7/208 (3%)

Query  1    MPSVNVPSAYNTVCIELEVRNLSINTILTSSIINELEGADTLLASS-------EPSADAN  53
             P +N P AY+ VC+EL++RNL++NTIL S++INELEG+D   A         E S    
Sbjct  193  SPEINNPGAYSNVCLELDIRNLAVNTILQSALINELEGSDLSTAFDAASHTLDEYSKGDV  252

Query  54   GSGVLYSEKAFASAGAVVLREMVKHWWSEACEGNNMADIMVQHLIRWVESPVSCLYDRSL  113
             S   Y E AF+SA   VLR MVK WW +A +GN  AD++V H +RWV+SP S LYD +L
Sbjct  253  NSSSTYDEDAFSSAAFRVLRSMVKSWWDDALKGNVFADLLVDHFVRWVQSPDSLLYDPAL  312

Query  114  HDYVRMLSRKSFQRLMAEFRRVGSNVIFASPTRLLLQTTKTEVGNAYAYSQYVLKSIRAN  173
            H +V  L +K+F +L+AEF+R+GS V++A   R+LLQT+K  V NAYAYSQY++K+IR+ 
Sbjct  313  HRHVHNLMKKAFLQLLAEFKRLGSTVVYADFNRILLQTSKPSVENAYAYSQYIVKAIRSK  372

Query  174  ASFHFIDLEIKEYWDYLVWYDEYNYGGK  201
              FHF+DL+I  YWDYL+W DE NYGG 
Sbjct  373  PLFHFLDLKIVRYWDYLLWMDEANYGGV  400



Lambda      K        H        a         alpha
   0.319    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00027003

Length=1077
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, ex...  147     2e-39


>CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease 
domain.  This domain has 3' to 5' exonuclease activity and 
adopts a ribonuclease H type fold.
Length=333

 Score = 147 bits (373),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 63/155 (41%), Positives = 82/155 (53%), Gaps = 24/155 (15%)

Query  1    MMISYMIDGQG-------FLITNREIVSEDIRDFEYTPKPEYSGPFMIFNEPNERSVIER  53
            + IS M+DGQG       FL T RE  SEDI DFEYTPKP Y G   +F  P+E+ ++ R
Sbjct  182  IQISCMLDGQGEPEPEPRFLFTLRECDSEDIEDFEYTPKPIYPGV-KVFEFPSEKELLRR  240

Query  54   FFEHIKEAKPTVIATYNGDFFDWPFVEARASVL--------------GIDMYKEIGFRKN  99
            FFE I++  P +I  YNGD FDWP++  RA  L              G    +EIGF   
Sbjct  241  FFEFIRQYDPDIITGYNGDNFDWPYILNRAKELYIVKLSSIGRLNRGGRSKVREIGFGTR  300

Query  100  SEDIYQSDHCVHMDCFAWVNRDSYLPQGSRGLKAV  134
            S +  +    +H+D +  + RD  LP  S  L AV
Sbjct  301  SYEKVKISGRLHLDLYRVIKRDYKLP--SYKLNAV  333



Lambda      K        H        a         alpha
   0.320    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1388974356


Query= TCONS_00027005

Length=1926
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462493 pfam08490, DUF1744, Domain of unknown function (DUF174...  628     0.0  
CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, ex...  150     4e-40


>CDD:462493 pfam08490, DUF1744, Domain of unknown function (DUF1744).  This 
domain is found on the epsilon catalytic subunit of DNA polymerase. 
It is found C terminal to pfam03104 and pfam00136.
Length=400

 Score = 628 bits (1623),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/402 (50%), Positives = 270/402 (67%), Gaps = 13/402 (3%)

Query  1219  VDKIYAELRARTMENMGGDQSQNAFEYQEKIHFKTTQVTTRRKAYLEIGDLIKKLKGEET  1278
             ++K+Y ELRA+ ++ +       AFEY E + F+ T  T  RKAY  +   + K K E++
Sbjct  1     LEKLYKELRAKKLDKLEKWSG--AFEYPEDMTFEVTYFTDERKAYKALSRALSKYKEEKS  58

Query  1279  QPVIMVIQSHQ-RHRLCHDIPILKEYPVLPVKPEVSDMDLPPLGWQSFIAKRLVTHYLYL  1337
              P ++V+QS +    L   IPIL E+PV+ +    +D  LP LGWQS +AKR+V HYL L
Sbjct  59    GPTLLVLQSPKDLSYLLSKIPILNEFPVVSIPSNDADSSLPALGWQSVVAKRMVNHYLSL  118

Query  1338  ASWIHHLTMLARYGDVPLCNLENDDPRYLIDISYARRLQQNNVVLWWSNGPRPDHAGYEK  1397
              SW+ HL  LARY D+PLCNLE+DDP +LIDI YARRL++NN+VLWWS  P PD  G EK
Sbjct  119   GSWLSHLIELARYFDIPLCNLESDDPLFLIDIFYARRLKKNNIVLWWSPSPLPDLGGREK  178

Query  1398  DD---VTGSLERVSMPSVNVPSAYNTVCIELEVRNLSINTILTSSIINELEGADTLLASS  1454
             DD     G +E +  P +N P AY+ VC+EL++RNL++NTIL S++INELEG+D   A  
Sbjct  179   DDNPNTLGLMEELDSPEINNPGAYSNVCLELDIRNLAVNTILQSALINELEGSDLSTAFD  238

Query  1455  -------EPSADANGSGVLYSEKAFASAGAVVLREMVKHWWSEACEGNNMADIMVQHLIR  1507
                    E S     S   Y E AF+SA   VLR MVK WW +A +GN  AD++V H +R
Sbjct  239   AASHTLDEYSKGDVNSSSTYDEDAFSSAAFRVLRSMVKSWWDDALKGNVFADLLVDHFVR  298

Query  1508  WVESPVSCLYDRSLHDYVRMLSRKSFQRLMAEFRRVGSNVIFASPTRLLLQTTKTEVGNA  1567
             WV+SP S LYD +LH +V  L +K+F +L+AEF+R+GS V++A   R+LLQT+K  V NA
Sbjct  299   WVQSPDSLLYDPALHRHVHNLMKKAFLQLLAEFKRLGSTVVYADFNRILLQTSKPSVENA  358

Query  1568  YAYSQYVLKSIRANASFHFIDLEIKEYWDYLVWYDEYNYGGK  1609
             YAYSQY++K+IR+   FHF+DL+I  YWDYL+W DE NYGG 
Sbjct  359   YAYSQYIVKAIRSKPLFHFLDLKIVRYWDYLLWMDEANYGGV  400


>CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease 
domain.  This domain has 3' to 5' exonuclease activity and 
adopts a ribonuclease H type fold.
Length=333

 Score = 150 bits (381),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 63/155 (41%), Positives = 82/155 (53%), Gaps = 24/155 (15%)

Query  1    MMISYMIDGQG-------FLITNREIVSEDIRDFEYTPKPEYSGPFMIFNEPNERSVIER  53
            + IS M+DGQG       FL T RE  SEDI DFEYTPKP Y G   +F  P+E+ ++ R
Sbjct  182  IQISCMLDGQGEPEPEPRFLFTLRECDSEDIEDFEYTPKPIYPGV-KVFEFPSEKELLRR  240

Query  54   FFEHIKEAKPTVIATYNGDFFDWPFVEARASVL--------------GIDMYKEIGFRKN  99
            FFE I++  P +I  YNGD FDWP++  RA  L              G    +EIGF   
Sbjct  241  FFEFIRQYDPDIITGYNGDNFDWPYILNRAKELYIVKLSSIGRLNRGGRSKVREIGFGTR  300

Query  100  SEDIYQSDHCVHMDCFAWVNRDSYLPQGSRGLKAV  134
            S +  +    +H+D +  + RD  LP  S  L AV
Sbjct  301  SYEKVKISGRLHLDLYRVIKRDYKLP--SYKLNAV  333



Lambda      K        H        a         alpha
   0.319    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2441953624


Query= TCONS_00027004

Length=1926
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462493 pfam08490, DUF1744, Domain of unknown function (DUF174...  628     0.0  
CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, ex...  150     4e-40


>CDD:462493 pfam08490, DUF1744, Domain of unknown function (DUF1744).  This 
domain is found on the epsilon catalytic subunit of DNA polymerase. 
It is found C terminal to pfam03104 and pfam00136.
Length=400

 Score = 628 bits (1623),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/402 (50%), Positives = 270/402 (67%), Gaps = 13/402 (3%)

Query  1219  VDKIYAELRARTMENMGGDQSQNAFEYQEKIHFKTTQVTTRRKAYLEIGDLIKKLKGEET  1278
             ++K+Y ELRA+ ++ +       AFEY E + F+ T  T  RKAY  +   + K K E++
Sbjct  1     LEKLYKELRAKKLDKLEKWSG--AFEYPEDMTFEVTYFTDERKAYKALSRALSKYKEEKS  58

Query  1279  QPVIMVIQSHQ-RHRLCHDIPILKEYPVLPVKPEVSDMDLPPLGWQSFIAKRLVTHYLYL  1337
              P ++V+QS +    L   IPIL E+PV+ +    +D  LP LGWQS +AKR+V HYL L
Sbjct  59    GPTLLVLQSPKDLSYLLSKIPILNEFPVVSIPSNDADSSLPALGWQSVVAKRMVNHYLSL  118

Query  1338  ASWIHHLTMLARYGDVPLCNLENDDPRYLIDISYARRLQQNNVVLWWSNGPRPDHAGYEK  1397
              SW+ HL  LARY D+PLCNLE+DDP +LIDI YARRL++NN+VLWWS  P PD  G EK
Sbjct  119   GSWLSHLIELARYFDIPLCNLESDDPLFLIDIFYARRLKKNNIVLWWSPSPLPDLGGREK  178

Query  1398  DD---VTGSLERVSMPSVNVPSAYNTVCIELEVRNLSINTILTSSIINELEGADTLLASS  1454
             DD     G +E +  P +N P AY+ VC+EL++RNL++NTIL S++INELEG+D   A  
Sbjct  179   DDNPNTLGLMEELDSPEINNPGAYSNVCLELDIRNLAVNTILQSALINELEGSDLSTAFD  238

Query  1455  -------EPSADANGSGVLYSEKAFASAGAVVLREMVKHWWSEACEGNNMADIMVQHLIR  1507
                    E S     S   Y E AF+SA   VLR MVK WW +A +GN  AD++V H +R
Sbjct  239   AASHTLDEYSKGDVNSSSTYDEDAFSSAAFRVLRSMVKSWWDDALKGNVFADLLVDHFVR  298

Query  1508  WVESPVSCLYDRSLHDYVRMLSRKSFQRLMAEFRRVGSNVIFASPTRLLLQTTKTEVGNA  1567
             WV+SP S LYD +LH +V  L +K+F +L+AEF+R+GS V++A   R+LLQT+K  V NA
Sbjct  299   WVQSPDSLLYDPALHRHVHNLMKKAFLQLLAEFKRLGSTVVYADFNRILLQTSKPSVENA  358

Query  1568  YAYSQYVLKSIRANASFHFIDLEIKEYWDYLVWYDEYNYGGK  1609
             YAYSQY++K+IR+   FHF+DL+I  YWDYL+W DE NYGG 
Sbjct  359   YAYSQYIVKAIRSKPLFHFLDLKIVRYWDYLLWMDEANYGGV  400


>CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease 
domain.  This domain has 3' to 5' exonuclease activity and 
adopts a ribonuclease H type fold.
Length=333

 Score = 150 bits (381),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 63/155 (41%), Positives = 82/155 (53%), Gaps = 24/155 (15%)

Query  1    MMISYMIDGQG-------FLITNREIVSEDIRDFEYTPKPEYSGPFMIFNEPNERSVIER  53
            + IS M+DGQG       FL T RE  SEDI DFEYTPKP Y G   +F  P+E+ ++ R
Sbjct  182  IQISCMLDGQGEPEPEPRFLFTLRECDSEDIEDFEYTPKPIYPGV-KVFEFPSEKELLRR  240

Query  54   FFEHIKEAKPTVIATYNGDFFDWPFVEARASVL--------------GIDMYKEIGFRKN  99
            FFE I++  P +I  YNGD FDWP++  RA  L              G    +EIGF   
Sbjct  241  FFEFIRQYDPDIITGYNGDNFDWPYILNRAKELYIVKLSSIGRLNRGGRSKVREIGFGTR  300

Query  100  SEDIYQSDHCVHMDCFAWVNRDSYLPQGSRGLKAV  134
            S +  +    +H+D +  + RD  LP  S  L AV
Sbjct  301  SYEKVKISGRLHLDLYRVIKRDYKLP--SYKLNAV  333



Lambda      K        H        a         alpha
   0.319    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2441953624


Query= TCONS_00022230

Length=1926
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462493 pfam08490, DUF1744, Domain of unknown function (DUF174...  628     0.0  
CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, ex...  150     4e-40


>CDD:462493 pfam08490, DUF1744, Domain of unknown function (DUF1744).  This 
domain is found on the epsilon catalytic subunit of DNA polymerase. 
It is found C terminal to pfam03104 and pfam00136.
Length=400

 Score = 628 bits (1623),  Expect = 0.0, Method: Composition-based stats.
 Identities = 202/402 (50%), Positives = 270/402 (67%), Gaps = 13/402 (3%)

Query  1219  VDKIYAELRARTMENMGGDQSQNAFEYQEKIHFKTTQVTTRRKAYLEIGDLIKKLKGEET  1278
             ++K+Y ELRA+ ++ +       AFEY E + F+ T  T  RKAY  +   + K K E++
Sbjct  1     LEKLYKELRAKKLDKLEKWSG--AFEYPEDMTFEVTYFTDERKAYKALSRALSKYKEEKS  58

Query  1279  QPVIMVIQSHQ-RHRLCHDIPILKEYPVLPVKPEVSDMDLPPLGWQSFIAKRLVTHYLYL  1337
              P ++V+QS +    L   IPIL E+PV+ +    +D  LP LGWQS +AKR+V HYL L
Sbjct  59    GPTLLVLQSPKDLSYLLSKIPILNEFPVVSIPSNDADSSLPALGWQSVVAKRMVNHYLSL  118

Query  1338  ASWIHHLTMLARYGDVPLCNLENDDPRYLIDISYARRLQQNNVVLWWSNGPRPDHAGYEK  1397
              SW+ HL  LARY D+PLCNLE+DDP +LIDI YARRL++NN+VLWWS  P PD  G EK
Sbjct  119   GSWLSHLIELARYFDIPLCNLESDDPLFLIDIFYARRLKKNNIVLWWSPSPLPDLGGREK  178

Query  1398  DD---VTGSLERVSMPSVNVPSAYNTVCIELEVRNLSINTILTSSIINELEGADTLLASS  1454
             DD     G +E +  P +N P AY+ VC+EL++RNL++NTIL S++INELEG+D   A  
Sbjct  179   DDNPNTLGLMEELDSPEINNPGAYSNVCLELDIRNLAVNTILQSALINELEGSDLSTAFD  238

Query  1455  -------EPSADANGSGVLYSEKAFASAGAVVLREMVKHWWSEACEGNNMADIMVQHLIR  1507
                    E S     S   Y E AF+SA   VLR MVK WW +A +GN  AD++V H +R
Sbjct  239   AASHTLDEYSKGDVNSSSTYDEDAFSSAAFRVLRSMVKSWWDDALKGNVFADLLVDHFVR  298

Query  1508  WVESPVSCLYDRSLHDYVRMLSRKSFQRLMAEFRRVGSNVIFASPTRLLLQTTKTEVGNA  1567
             WV+SP S LYD +LH +V  L +K+F +L+AEF+R+GS V++A   R+LLQT+K  V NA
Sbjct  299   WVQSPDSLLYDPALHRHVHNLMKKAFLQLLAEFKRLGSTVVYADFNRILLQTSKPSVENA  358

Query  1568  YAYSQYVLKSIRANASFHFIDLEIKEYWDYLVWYDEYNYGGK  1609
             YAYSQY++K+IR+   FHF+DL+I  YWDYL+W DE NYGG 
Sbjct  359   YAYSQYIVKAIRSKPLFHFLDLKIVRYWDYLLWMDEANYGGV  400


>CDD:397292 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease 
domain.  This domain has 3' to 5' exonuclease activity and 
adopts a ribonuclease H type fold.
Length=333

 Score = 150 bits (381),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 63/155 (41%), Positives = 82/155 (53%), Gaps = 24/155 (15%)

Query  1    MMISYMIDGQG-------FLITNREIVSEDIRDFEYTPKPEYSGPFMIFNEPNERSVIER  53
            + IS M+DGQG       FL T RE  SEDI DFEYTPKP Y G   +F  P+E+ ++ R
Sbjct  182  IQISCMLDGQGEPEPEPRFLFTLRECDSEDIEDFEYTPKPIYPGV-KVFEFPSEKELLRR  240

Query  54   FFEHIKEAKPTVIATYNGDFFDWPFVEARASVL--------------GIDMYKEIGFRKN  99
            FFE I++  P +I  YNGD FDWP++  RA  L              G    +EIGF   
Sbjct  241  FFEFIRQYDPDIITGYNGDNFDWPYILNRAKELYIVKLSSIGRLNRGGRSKVREIGFGTR  300

Query  100  SEDIYQSDHCVHMDCFAWVNRDSYLPQGSRGLKAV  134
            S +  +    +H+D +  + RD  LP  S  L AV
Sbjct  301  SYEKVKISGRLHLDLYRVIKRDYKLP--SYKLNAV  333



Lambda      K        H        a         alpha
   0.319    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2441953624


Query= TCONS_00027006

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0798    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00027007

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  391     4e-135


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 391 bits (1008),  Expect = 4e-135, Method: Composition-based stats.
 Identities = 143/339 (42%), Positives = 209/339 (62%), Gaps = 13/339 (4%)

Query  1    MVEIMTMQHRTASDTQLIRGLALDHGARHPDMPKRVENAFILTLNVSLEYEKSEINSGFY  60
             + ++ +   +  D++L+ G+ LD G  HPDMPKR+ENA +L LN SLEYEK+E  +   
Sbjct  163  NIGVVKILGGSLEDSELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVV  222

Query  61   YSSAEQRDKLVESERKFVDAKLQKIMELKKQVCGTDPKKGFVVINQKGIDPLSLDVLVKN  120
             S AEQ ++ +++E + +   ++KI++    V          V+ QKGID L+L  L KN
Sbjct  223  LSDAEQLERFLKAEEEQILEIVEKIIDSGVNV----------VVCQKGIDDLALHFLAKN  272

Query  121  GILALRRAKRRNMERLQLVCGGVAQNSVDDLTPDVLGWAGLVYEHQLGEEKYTFVEEVKD  180
            GI+ALRR K+R++ERL    G  A +S+DDLTPD LG AG V E ++G+EKYTF+E  K 
Sbjct  273  GIMALRRVKKRDLERLAKATGARAVSSLDDLTPDDLGTAGKVEEEKIGDEKYTFIEGCKS  332

Query  181  PKSVTILIKGPNQHTIAQVKDAVRDGLRSVYNTIVDGCVVPGAGAYQVACAHHLSSEGVR  240
            PK+ TIL++G   H + +++ ++ D L  V N I D  VVPG GA ++  A  L      
Sbjct  333  PKAATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYA--  390

Query  241  RSVKGKAKWGVAAFADALLVIPKTLAANSGHDIQDSLAALQDERAEGNV-VGLDLTTGEP  299
            +SV GK +  + AFA+AL VIPKTLA N+G D  + LA L+   A G    G+D+ TGE 
Sbjct  391  KSVSGKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEI  450

Query  300  MDPVQEGVFDSYRVLRNCIASSTGIASNLLLCDELLKAR  338
            +D  + GV D  +V R  + S+T  AS +L  D+++KA+
Sbjct  451  IDMKEAGVVDPLKVKRQALKSATEAASTILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.317    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00022231

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  391     4e-135


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 391 bits (1008),  Expect = 4e-135, Method: Composition-based stats.
 Identities = 143/339 (42%), Positives = 209/339 (62%), Gaps = 13/339 (4%)

Query  1    MVEIMTMQHRTASDTQLIRGLALDHGARHPDMPKRVENAFILTLNVSLEYEKSEINSGFY  60
             + ++ +   +  D++L+ G+ LD G  HPDMPKR+ENA +L LN SLEYEK+E  +   
Sbjct  163  NIGVVKILGGSLEDSELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVV  222

Query  61   YSSAEQRDKLVESERKFVDAKLQKIMELKKQVCGTDPKKGFVVINQKGIDPLSLDVLVKN  120
             S AEQ ++ +++E + +   ++KI++    V          V+ QKGID L+L  L KN
Sbjct  223  LSDAEQLERFLKAEEEQILEIVEKIIDSGVNV----------VVCQKGIDDLALHFLAKN  272

Query  121  GILALRRAKRRNMERLQLVCGGVAQNSVDDLTPDVLGWAGLVYEHQLGEEKYTFVEEVKD  180
            GI+ALRR K+R++ERL    G  A +S+DDLTPD LG AG V E ++G+EKYTF+E  K 
Sbjct  273  GIMALRRVKKRDLERLAKATGARAVSSLDDLTPDDLGTAGKVEEEKIGDEKYTFIEGCKS  332

Query  181  PKSVTILIKGPNQHTIAQVKDAVRDGLRSVYNTIVDGCVVPGAGAYQVACAHHLSSEGVR  240
            PK+ TIL++G   H + +++ ++ D L  V N I D  VVPG GA ++  A  L      
Sbjct  333  PKAATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYA--  390

Query  241  RSVKGKAKWGVAAFADALLVIPKTLAANSGHDIQDSLAALQDERAEGNV-VGLDLTTGEP  299
            +SV GK +  + AFA+AL VIPKTLA N+G D  + LA L+   A G    G+D+ TGE 
Sbjct  391  KSVSGKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEI  450

Query  300  MDPVQEGVFDSYRVLRNCIASSTGIASNLLLCDELLKAR  338
            +D  + GV D  +V R  + S+T  AS +L  D+++KA+
Sbjct  451  IDMKEAGVVDPLKVKRQALKSATEAASTILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.317    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00027009

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00027010

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  391     4e-135


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 391 bits (1008),  Expect = 4e-135, Method: Composition-based stats.
 Identities = 143/339 (42%), Positives = 209/339 (62%), Gaps = 13/339 (4%)

Query  1    MVEIMTMQHRTASDTQLIRGLALDHGARHPDMPKRVENAFILTLNVSLEYEKSEINSGFY  60
             + ++ +   +  D++L+ G+ LD G  HPDMPKR+ENA +L LN SLEYEK+E  +   
Sbjct  163  NIGVVKILGGSLEDSELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVV  222

Query  61   YSSAEQRDKLVESERKFVDAKLQKIMELKKQVCGTDPKKGFVVINQKGIDPLSLDVLVKN  120
             S AEQ ++ +++E + +   ++KI++    V          V+ QKGID L+L  L KN
Sbjct  223  LSDAEQLERFLKAEEEQILEIVEKIIDSGVNV----------VVCQKGIDDLALHFLAKN  272

Query  121  GILALRRAKRRNMERLQLVCGGVAQNSVDDLTPDVLGWAGLVYEHQLGEEKYTFVEEVKD  180
            GI+ALRR K+R++ERL    G  A +S+DDLTPD LG AG V E ++G+EKYTF+E  K 
Sbjct  273  GIMALRRVKKRDLERLAKATGARAVSSLDDLTPDDLGTAGKVEEEKIGDEKYTFIEGCKS  332

Query  181  PKSVTILIKGPNQHTIAQVKDAVRDGLRSVYNTIVDGCVVPGAGAYQVACAHHLSSEGVR  240
            PK+ TIL++G   H + +++ ++ D L  V N I D  VVPG GA ++  A  L      
Sbjct  333  PKAATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYA--  390

Query  241  RSVKGKAKWGVAAFADALLVIPKTLAANSGHDIQDSLAALQDERAEGNV-VGLDLTTGEP  299
            +SV GK +  + AFA+AL VIPKTLA N+G D  + LA L+   A G    G+D+ TGE 
Sbjct  391  KSVSGKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEI  450

Query  300  MDPVQEGVFDSYRVLRNCIASSTGIASNLLLCDELLKAR  338
            +D  + GV D  +V R  + S+T  AS +L  D+++KA+
Sbjct  451  IDMKEAGVVDPLKVKRQALKSATEAASTILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.317    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00022232

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  391     4e-135


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 391 bits (1008),  Expect = 4e-135, Method: Composition-based stats.
 Identities = 143/339 (42%), Positives = 209/339 (62%), Gaps = 13/339 (4%)

Query  1    MVEIMTMQHRTASDTQLIRGLALDHGARHPDMPKRVENAFILTLNVSLEYEKSEINSGFY  60
             + ++ +   +  D++L+ G+ LD G  HPDMPKR+ENA +L LN SLEYEK+E  +   
Sbjct  163  NIGVVKILGGSLEDSELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVV  222

Query  61   YSSAEQRDKLVESERKFVDAKLQKIMELKKQVCGTDPKKGFVVINQKGIDPLSLDVLVKN  120
             S AEQ ++ +++E + +   ++KI++    V          V+ QKGID L+L  L KN
Sbjct  223  LSDAEQLERFLKAEEEQILEIVEKIIDSGVNV----------VVCQKGIDDLALHFLAKN  272

Query  121  GILALRRAKRRNMERLQLVCGGVAQNSVDDLTPDVLGWAGLVYEHQLGEEKYTFVEEVKD  180
            GI+ALRR K+R++ERL    G  A +S+DDLTPD LG AG V E ++G+EKYTF+E  K 
Sbjct  273  GIMALRRVKKRDLERLAKATGARAVSSLDDLTPDDLGTAGKVEEEKIGDEKYTFIEGCKS  332

Query  181  PKSVTILIKGPNQHTIAQVKDAVRDGLRSVYNTIVDGCVVPGAGAYQVACAHHLSSEGVR  240
            PK+ TIL++G   H + +++ ++ D L  V N I D  VVPG GA ++  A  L      
Sbjct  333  PKAATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYA--  390

Query  241  RSVKGKAKWGVAAFADALLVIPKTLAANSGHDIQDSLAALQDERAEGNV-VGLDLTTGEP  299
            +SV GK +  + AFA+AL VIPKTLA N+G D  + LA L+   A G    G+D+ TGE 
Sbjct  391  KSVSGKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEI  450

Query  300  MDPVQEGVFDSYRVLRNCIASSTGIASNLLLCDELLKAR  338
            +D  + GV D  +V R  + S+T  AS +L  D+++KA+
Sbjct  451  IDMKEAGVVDPLKVKRQALKSATEAASTILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.317    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00022233

Length=126
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403707 pfam12597, DUF3767, Protein of unknown function (DUF37...  53.3    6e-11


>CDD:403707 pfam12597, DUF3767, Protein of unknown function (DUF3767).  This 
family of proteins is found in eukaryotes. Proteins in this 
family are typically between 112 and 199 amino acids in 
length.
Length=101

 Score = 53.3 bits (129),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 17/30 (57%), Positives = 24/30 (80%), Gaps = 0/30 (0%)

Query  73   DVSVTEAVKSISLKEVTSFYKAPCARDSLL  102
              +++EAVKSI L + T+F+K PCARD+LL
Sbjct  1    QPTLSEAVKSIKLSDFTNFHKIPCARDALL  30



Lambda      K        H        a         alpha
   0.310    0.129    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00022234

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  318     5e-107


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 318 bits (818),  Expect = 5e-107, Method: Composition-based stats.
 Identities = 121/339 (36%), Positives = 181/339 (53%), Gaps = 52/339 (15%)

Query  1    MVEIMTMQHRTASDTQLIRGLALDHGARHPDMPKRVENAFILTLNVSLEYEKSEINSGFY  60
             + ++ +   +  D++L+ G+ LD G  HPDMPKR+ENA +L LN SLEYEK+E  +   
Sbjct  163  NIGVVKILGGSLEDSELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVV  222

Query  61   YSSAEQRDKLVESERKFVDAKLQKIMELKKQVCGTDPKKGFVVINQKGIDPLSL------  114
             S AEQ ++ +++E + +   ++KI++    V          V+ QKGID L+L      
Sbjct  223  LSDAEQLERFLKAEEEQILEIVEKIIDSGVNV----------VVCQKGIDDLALHFLAKN  272

Query  115  ---------------------------------DVLGWAGLVYEHQLGEEKYTFVEEVKD  141
                                             D LG AG V E ++G+EKYTF+E  K 
Sbjct  273  GIMALRRVKKRDLERLAKATGARAVSSLDDLTPDDLGTAGKVEEEKIGDEKYTFIEGCKS  332

Query  142  PKSVTILIKGPNQHTIAQVKDAVRDGLRSVYNTIVDGCVVPGAGAYQVACAHHLSSEGVR  201
            PK+ TIL++G   H + +++ ++ D L  V N I D  VVPG GA ++  A  L      
Sbjct  333  PKAATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYA--  390

Query  202  RSVKGKAKWGVAAFADALLVIPKTLAANSGHDIQDSLAALQDERAEGNV-VGLDLTTGEP  260
            +SV GK +  + AFA+AL VIPKTLA N+G D  + LA L+   A G    G+D+ TGE 
Sbjct  391  KSVSGKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEI  450

Query  261  MDPVQEGVFDSYRVLRNCIASSTGIASNLLLCDELLKAR  299
            +D  + GV D  +V R  + S+T  AS +L  D+++KA+
Sbjct  451  IDMKEAGVVDPLKVKRQALKSATEAASTILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.316    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00022235

Length=991
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  59.6    9e-12


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 59.6 bits (145),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (56%), Gaps = 1/70 (1%)

Query  597  LFIGNVGFNVSEKTIRDVFAAKGFLVDVHLPLDAETRKHAGFGYLYFPSIHAARAALDAL  656
            LF+GN+  + +E+ ++D+F+  G +  + L  D ET +  GF ++ F     A  A++AL
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  657  QGTHIDGHSI  666
             G  + G  +
Sbjct  60   NGKELGGREL  69



Lambda      K        H        a         alpha
   0.312    0.129    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1267209020


Query= TCONS_00027011

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin. Th...  348     3e-120
CDD:462382 pfam08156, NOP5NT, NOP5NT (NUC127) domain. This N term...  94.4    1e-24 


>CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin.  This family 
consists of various Pre RNA processing ribonucleoproteins. 
The function of the aligned region is unknown however it 
may be a common RNA or snoRNA or Nop1p binding domain. Nop5p 
(Nop58p) from yeast is the protein component of a ribonucleoprotein 
required for pre-18s rRNA processing and is suggested 
to function with Nop1p in a snoRNA complex. Nop56p and Nop5p 
interact with Nop1p and are required for ribosome biogenesis. 
Prp31p is required for pre-mRNA splicing in S. cerevisiae. 
Fibrillarin, or Nop, is the catalytic subunit responsible 
for the methyl transfer reaction of the site-specific 2'-O-methylation 
of ribosomal and spliceosomal RNA.
Length=229

 Score = 348 bits (895),  Expect = 3e-120, Method: Composition-based stats.
 Identities = 125/238 (53%), Positives = 164/238 (69%), Gaps = 15/238 (6%)

Query  181  LDQLDKAINTFSMRVREWYSWHFPELVKIVSDNQRYAQIALFVK-DKKTLTDESLHDLAA  239
            LD +DK IN   MR+REWYSWHFPEL  +V D   YA++   +  D++ LT         
Sbjct  1    LDDIDKEINLVHMRIREWYSWHFPELESLVPDPLDYAKVVKLIGNDREDLTK--------  52

Query  240  LVDDDEGVAQSIIDAAKH----SMGQEISESDMENVIAFAQRVVSLSKYRKSLHAYLVSK  295
             +D D  +A++II AA      SMG E+SE D+EN++    RV+ L +YRK L  YL S+
Sbjct  53   -IDPDLELAKAIIMAASVTASTSMGTELSEEDLENILEACDRVLELDEYRKKLLEYLESR  111

Query  296  MSVVAPNLAALIGEIVGARLISHAGSLTNLSKYPASTVQILGAEKALFRALKTKGNTPKY  355
            MS +APNL AL+G +V ARLISHAG LTNL+K PAS +QILGAEKALFRALKT  NTPKY
Sbjct  112  MSAIAPNLTALVGPLVAARLISHAGGLTNLAKMPASNIQILGAEKALFRALKTGFNTPKY  171

Query  356  GLLYHSSFIGRAGPKNKGRISRFLANKCSIASRIDNFSEQPSTKFGEVLKKQVEERLE  413
            GL+YHS  +    PK +G+ +R LA KC++A+R+D FSE P   +GE L++++E+RLE
Sbjct  172  GLIYHSPLVQATPPKLRGKAARLLAAKCALAARVDAFSE-PDGSYGEKLREEIEKRLE  228


>CDD:462382 pfam08156, NOP5NT, NOP5NT (NUC127) domain.  This N terminal domain 
is found in RNA-binding proteins of the NOP5 family.
Length=66

 Score = 94.4 bits (236),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 44/67 (66%), Gaps = 1/67 (1%)

Query  4   YLLFEGPMGYSIFKVTHQGDSVGNRLKEVQDGVNDLAKFGKMVELASFLPFENNKQALSE  63
            +LFE   GY++FKV    + +G +LKEVQ+   DL KF KMV+L +F PF++  +AL  
Sbjct  1   LVLFETAAGYALFKV-KDEEEIGKKLKEVQESFQDLEKFSKMVKLKAFSPFKSAAEALEN  59

Query  64  INDVSEG  70
            N +SEG
Sbjct  60  ANAISEG  66



Lambda      K        H        a         alpha
   0.318    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 558268256


Query= TCONS_00022236

Length=991
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  59.6    9e-12


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 59.6 bits (145),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (56%), Gaps = 1/70 (1%)

Query  597  LFIGNVGFNVSEKTIRDVFAAKGFLVDVHLPLDAETRKHAGFGYLYFPSIHAARAALDAL  656
            LF+GN+  + +E+ ++D+F+  G +  + L  D ET +  GF ++ F     A  A++AL
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  657  QGTHIDGHSI  666
             G  + G  +
Sbjct  60   NGKELGGREL  69



Lambda      K        H        a         alpha
   0.312    0.129    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1267209020


Query= TCONS_00027012

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin. Th...  342     4e-117


>CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin.  This family 
consists of various Pre RNA processing ribonucleoproteins. 
The function of the aligned region is unknown however it 
may be a common RNA or snoRNA or Nop1p binding domain. Nop5p 
(Nop58p) from yeast is the protein component of a ribonucleoprotein 
required for pre-18s rRNA processing and is suggested 
to function with Nop1p in a snoRNA complex. Nop56p and Nop5p 
interact with Nop1p and are required for ribosome biogenesis. 
Prp31p is required for pre-mRNA splicing in S. cerevisiae. 
Fibrillarin, or Nop, is the catalytic subunit responsible 
for the methyl transfer reaction of the site-specific 2'-O-methylation 
of ribosomal and spliceosomal RNA.
Length=229

 Score = 342 bits (880),  Expect = 4e-117, Method: Composition-based stats.
 Identities = 125/238 (53%), Positives = 164/238 (69%), Gaps = 15/238 (6%)

Query  166  LDQLDKAINTFSMRVREWYSWHFPELVKIVSDNQRYAQIALFVK-DKKTLTDESLHDLAA  224
            LD +DK IN   MR+REWYSWHFPEL  +V D   YA++   +  D++ LT         
Sbjct  1    LDDIDKEINLVHMRIREWYSWHFPELESLVPDPLDYAKVVKLIGNDREDLTK--------  52

Query  225  LVDDDEGVAQSIIDAAKH----SMGQEISESDMENVIAFAQRVVSLSKYRKSLHAYLVSK  280
             +D D  +A++II AA      SMG E+SE D+EN++    RV+ L +YRK L  YL S+
Sbjct  53   -IDPDLELAKAIIMAASVTASTSMGTELSEEDLENILEACDRVLELDEYRKKLLEYLESR  111

Query  281  MSVVAPNLAALIGEIVGARLISHAGSLTNLSKYPASTVQILGAEKALFRALKTKGNTPKY  340
            MS +APNL AL+G +V ARLISHAG LTNL+K PAS +QILGAEKALFRALKT  NTPKY
Sbjct  112  MSAIAPNLTALVGPLVAARLISHAGGLTNLAKMPASNIQILGAEKALFRALKTGFNTPKY  171

Query  341  GLLYHSSFIGRAGPKNKGRISRFLANKCSIASRIDNFSEQPSTKFGEVLKKQVEERLE  398
            GL+YHS  +    PK +G+ +R LA KC++A+R+D FSE P   +GE L++++E+RLE
Sbjct  172  GLIYHSPLVQATPPKLRGKAARLLAAKCALAARVDAFSE-PDGSYGEKLREEIEKRLE  228



Lambda      K        H        a         alpha
   0.312    0.127    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00022237

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin. Th...  344     7e-118
CDD:462382 pfam08156, NOP5NT, NOP5NT (NUC127) domain. This N term...  92.1    1e-23 


>CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin.  This family 
consists of various Pre RNA processing ribonucleoproteins. 
The function of the aligned region is unknown however it 
may be a common RNA or snoRNA or Nop1p binding domain. Nop5p 
(Nop58p) from yeast is the protein component of a ribonucleoprotein 
required for pre-18s rRNA processing and is suggested 
to function with Nop1p in a snoRNA complex. Nop56p and Nop5p 
interact with Nop1p and are required for ribosome biogenesis. 
Prp31p is required for pre-mRNA splicing in S. cerevisiae. 
Fibrillarin, or Nop, is the catalytic subunit responsible 
for the methyl transfer reaction of the site-specific 2'-O-methylation 
of ribosomal and spliceosomal RNA.
Length=229

 Score = 344 bits (886),  Expect = 7e-118, Method: Composition-based stats.
 Identities = 125/238 (53%), Positives = 164/238 (69%), Gaps = 15/238 (6%)

Query  181  LDQLDKAINTFSMRVREWYSWHFPELVKIVSDNQRYAQIALFVK-DKKTLTDESLHDLAA  239
            LD +DK IN   MR+REWYSWHFPEL  +V D   YA++   +  D++ LT         
Sbjct  1    LDDIDKEINLVHMRIREWYSWHFPELESLVPDPLDYAKVVKLIGNDREDLTK--------  52

Query  240  LVDDDEGVAQSIIDAAKH----SMGQEISESDMENVIAFAQRVVSLSKYRKSLHAYLVSK  295
             +D D  +A++II AA      SMG E+SE D+EN++    RV+ L +YRK L  YL S+
Sbjct  53   -IDPDLELAKAIIMAASVTASTSMGTELSEEDLENILEACDRVLELDEYRKKLLEYLESR  111

Query  296  MSVVAPNLAALIGEIVGARLISHAGSLTNLSKYPASTVQILGAEKALFRALKTKGNTPKY  355
            MS +APNL AL+G +V ARLISHAG LTNL+K PAS +QILGAEKALFRALKT  NTPKY
Sbjct  112  MSAIAPNLTALVGPLVAARLISHAGGLTNLAKMPASNIQILGAEKALFRALKTGFNTPKY  171

Query  356  GLLYHSSFIGRAGPKNKGRISRFLANKCSIASRIDNFSEQPSTKFGEVLKKQVEERLE  413
            GL+YHS  +    PK +G+ +R LA KC++A+R+D FSE P   +GE L++++E+RLE
Sbjct  172  GLIYHSPLVQATPPKLRGKAARLLAAKCALAARVDAFSE-PDGSYGEKLREEIEKRLE  228


>CDD:462382 pfam08156, NOP5NT, NOP5NT (NUC127) domain.  This N terminal domain 
is found in RNA-binding proteins of the NOP5 family.
Length=66

 Score = 92.1 bits (230),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 44/67 (66%), Gaps = 1/67 (1%)

Query  4   YLLFEGPMGYSIFKVTHQGDSVGNRLKEVQDGVNDLAKFGKMVELASFLPFENNKQALSE  63
            +LFE   GY++FKV    + +G +LKEVQ+   DL KF KMV+L +F PF++  +AL  
Sbjct  1   LVLFETAAGYALFKV-KDEEEIGKKLKEVQESFQDLEKFSKMVKLKAFSPFKSAAEALEN  59

Query  64  INDVSEG  70
            N +SEG
Sbjct  60  ANAISEG  66



Lambda      K        H        a         alpha
   0.312    0.129    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 652562446


Query= TCONS_00027013

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin. Th...  348     3e-120
CDD:462382 pfam08156, NOP5NT, NOP5NT (NUC127) domain. This N term...  94.4    1e-24 


>CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin.  This family 
consists of various Pre RNA processing ribonucleoproteins. 
The function of the aligned region is unknown however it 
may be a common RNA or snoRNA or Nop1p binding domain. Nop5p 
(Nop58p) from yeast is the protein component of a ribonucleoprotein 
required for pre-18s rRNA processing and is suggested 
to function with Nop1p in a snoRNA complex. Nop56p and Nop5p 
interact with Nop1p and are required for ribosome biogenesis. 
Prp31p is required for pre-mRNA splicing in S. cerevisiae. 
Fibrillarin, or Nop, is the catalytic subunit responsible 
for the methyl transfer reaction of the site-specific 2'-O-methylation 
of ribosomal and spliceosomal RNA.
Length=229

 Score = 348 bits (895),  Expect = 3e-120, Method: Composition-based stats.
 Identities = 125/238 (53%), Positives = 164/238 (69%), Gaps = 15/238 (6%)

Query  181  LDQLDKAINTFSMRVREWYSWHFPELVKIVSDNQRYAQIALFVK-DKKTLTDESLHDLAA  239
            LD +DK IN   MR+REWYSWHFPEL  +V D   YA++   +  D++ LT         
Sbjct  1    LDDIDKEINLVHMRIREWYSWHFPELESLVPDPLDYAKVVKLIGNDREDLTK--------  52

Query  240  LVDDDEGVAQSIIDAAKH----SMGQEISESDMENVIAFAQRVVSLSKYRKSLHAYLVSK  295
             +D D  +A++II AA      SMG E+SE D+EN++    RV+ L +YRK L  YL S+
Sbjct  53   -IDPDLELAKAIIMAASVTASTSMGTELSEEDLENILEACDRVLELDEYRKKLLEYLESR  111

Query  296  MSVVAPNLAALIGEIVGARLISHAGSLTNLSKYPASTVQILGAEKALFRALKTKGNTPKY  355
            MS +APNL AL+G +V ARLISHAG LTNL+K PAS +QILGAEKALFRALKT  NTPKY
Sbjct  112  MSAIAPNLTALVGPLVAARLISHAGGLTNLAKMPASNIQILGAEKALFRALKTGFNTPKY  171

Query  356  GLLYHSSFIGRAGPKNKGRISRFLANKCSIASRIDNFSEQPSTKFGEVLKKQVEERLE  413
            GL+YHS  +    PK +G+ +R LA KC++A+R+D FSE P   +GE L++++E+RLE
Sbjct  172  GLIYHSPLVQATPPKLRGKAARLLAAKCALAARVDAFSE-PDGSYGEKLREEIEKRLE  228


>CDD:462382 pfam08156, NOP5NT, NOP5NT (NUC127) domain.  This N terminal domain 
is found in RNA-binding proteins of the NOP5 family.
Length=66

 Score = 94.4 bits (236),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 44/67 (66%), Gaps = 1/67 (1%)

Query  4   YLLFEGPMGYSIFKVTHQGDSVGNRLKEVQDGVNDLAKFGKMVELASFLPFENNKQALSE  63
            +LFE   GY++FKV    + +G +LKEVQ+   DL KF KMV+L +F PF++  +AL  
Sbjct  1   LVLFETAAGYALFKV-KDEEEIGKKLKEVQESFQDLEKFSKMVKLKAFSPFKSAAEALEN  59

Query  64  INDVSEG  70
            N +SEG
Sbjct  60  ANAISEG  66



Lambda      K        H        a         alpha
   0.318    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 558268256


Query= TCONS_00022238

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin. Th...  344     8e-118
CDD:462382 pfam08156, NOP5NT, NOP5NT (NUC127) domain. This N term...  92.1    1e-23 


>CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin.  This family 
consists of various Pre RNA processing ribonucleoproteins. 
The function of the aligned region is unknown however it 
may be a common RNA or snoRNA or Nop1p binding domain. Nop5p 
(Nop58p) from yeast is the protein component of a ribonucleoprotein 
required for pre-18s rRNA processing and is suggested 
to function with Nop1p in a snoRNA complex. Nop56p and Nop5p 
interact with Nop1p and are required for ribosome biogenesis. 
Prp31p is required for pre-mRNA splicing in S. cerevisiae. 
Fibrillarin, or Nop, is the catalytic subunit responsible 
for the methyl transfer reaction of the site-specific 2'-O-methylation 
of ribosomal and spliceosomal RNA.
Length=229

 Score = 344 bits (886),  Expect = 8e-118, Method: Composition-based stats.
 Identities = 125/238 (53%), Positives = 164/238 (69%), Gaps = 15/238 (6%)

Query  181  LDQLDKAINTFSMRVREWYSWHFPELVKIVSDNQRYAQIALFVK-DKKTLTDESLHDLAA  239
            LD +DK IN   MR+REWYSWHFPEL  +V D   YA++   +  D++ LT         
Sbjct  1    LDDIDKEINLVHMRIREWYSWHFPELESLVPDPLDYAKVVKLIGNDREDLTK--------  52

Query  240  LVDDDEGVAQSIIDAAKH----SMGQEISESDMENVIAFAQRVVSLSKYRKSLHAYLVSK  295
             +D D  +A++II AA      SMG E+SE D+EN++    RV+ L +YRK L  YL S+
Sbjct  53   -IDPDLELAKAIIMAASVTASTSMGTELSEEDLENILEACDRVLELDEYRKKLLEYLESR  111

Query  296  MSVVAPNLAALIGEIVGARLISHAGSLTNLSKYPASTVQILGAEKALFRALKTKGNTPKY  355
            MS +APNL AL+G +V ARLISHAG LTNL+K PAS +QILGAEKALFRALKT  NTPKY
Sbjct  112  MSAIAPNLTALVGPLVAARLISHAGGLTNLAKMPASNIQILGAEKALFRALKTGFNTPKY  171

Query  356  GLLYHSSFIGRAGPKNKGRISRFLANKCSIASRIDNFSEQPSTKFGEVLKKQVEERLE  413
            GL+YHS  +    PK +G+ +R LA KC++A+R+D FSE P   +GE L++++E+RLE
Sbjct  172  GLIYHSPLVQATPPKLRGKAARLLAAKCALAARVDAFSE-PDGSYGEKLREEIEKRLE  228


>CDD:462382 pfam08156, NOP5NT, NOP5NT (NUC127) domain.  This N terminal domain 
is found in RNA-binding proteins of the NOP5 family.
Length=66

 Score = 92.1 bits (230),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 44/67 (66%), Gaps = 1/67 (1%)

Query  4   YLLFEGPMGYSIFKVTHQGDSVGNRLKEVQDGVNDLAKFGKMVELASFLPFENNKQALSE  63
            +LFE   GY++FKV    + +G +LKEVQ+   DL KF KMV+L +F PF++  +AL  
Sbjct  1   LVLFETAAGYALFKV-KDEEEIGKKLKEVQESFQDLEKFSKMVKLKAFSPFKSAAEALEN  59

Query  64  INDVSEG  70
            N +SEG
Sbjct  60  ANAISEG  66



Lambda      K        H        a         alpha
   0.312    0.129    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 652562446


Query= TCONS_00027014

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460362 pfam01853, MOZ_SAS, MOZ/SAS family. This region of the...  236     2e-79
CDD:407644 pfam17772, zf-MYST, MYST family zinc finger domain. Th...  67.3    2e-15


>CDD:460362 pfam01853, MOZ_SAS, MOZ/SAS family.  This region of these proteins 
has been suggested to be homologous to acetyltransferases.
Length=179

 Score = 236 bits (605),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 82/151 (54%), Positives = 101/151 (67%), Gaps = 6/151 (4%)

Query  78   PPGAQVYEHGGFSVWEVDGDEHKLYAQNLSLFAKLFLDHKSVFFDVATFLYYILTFTDPG  137
            PPG ++Y  G  S++EVDG + KLY QNL L AKLFLDHK++++DV  FL+Y+LT TD  
Sbjct  1    PPGNEIYRKGNISIFEVDGRKQKLYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTETD--  58

Query  138  NPEKYHILGFFSKEKLSWDANNLACILVFPPYQHKQLGKLLMGVSYKISAWEEDAGFIGG  197
                 HI+G+FSKEK S D  NLACIL  PPYQ K  GKLL+  SY++S  E   G IGG
Sbjct  59   -ETGCHIVGYFSKEKESSDNYNLACILTLPPYQRKGYGKLLIEFSYELSKRE---GKIGG  114

Query  198  PEKPLSDMGARSYSRFWQERIGRRLLLDDTD  228
            PEKPLSD+G  SY  +W E I   LL    +
Sbjct  115  PEKPLSDLGLLSYRSYWSEVILEYLLKHRKE  145


>CDD:407644 pfam17772, zf-MYST, MYST family zinc finger domain.  This zinc 
finger domain is found in the MYST family of histone acetyltransferases.
Length=55

 Score = 67.3 bits (165),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 19/56 (34%), Positives = 31/56 (55%), Gaps = 2/56 (4%)

Query  17  RNLKQVVLGDLLFKTWYQSIYPEDLVSKDTDRLYVCCWCFCYSCDVNSHVKHMRLC  72
           +N++++  G     TWY S YPE+    + D+LYVC +C  Y     S+ +H + C
Sbjct  2   KNIEKIQFGRYEIDTWYFSPYPEEYT--NVDKLYVCEFCLKYMKSRKSYKRHRKKC  55



Lambda      K        H        a         alpha
   0.323    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00022239

Length=965
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  59.6    8e-12


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 59.6 bits (145),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (56%), Gaps = 1/70 (1%)

Query  571  LFIGNVGFNVSEKTIRDVFAAKGFLVDVHLPLDAETRKHAGFGYLYFPSIHAARAALDAL  630
            LF+GN+  + +E+ ++D+F+  G +  + L  D ET +  GF ++ F     A  A++AL
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  631  QGTHIDGHSI  640
             G  + G  +
Sbjct  60   NGKELGGREL  69



Lambda      K        H        a         alpha
   0.312    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1230396244


Query= TCONS_00027015

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00022241

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  212     6e-65


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 212 bits (542),  Expect = 6e-65, Method: Composition-based stats.
 Identities = 95/408 (23%), Positives = 160/408 (39%), Gaps = 97/408 (24%)

Query  140  SPDFLRSIPHLRLRTPFNSVLSRFRSECLYQLGNVFRDAPNGGYVQVQPPLITSSDCEGA  199
              +      +L LR P      + RS+ +  + N   +    G+++V+ P++T S     
Sbjct  1    DEETRLKYRYLDLRRPKMQANLKLRSKIIKAIRNFLDE---NGFLEVETPILTKSATPEG  57

Query  200  GETFTVLPRETIMDPKSEGNHFFRAPKYLTVSSQLHLEAY-AAELGNVWAISPTFRAEKS  258
               F V        P      F+     L  S QL+ +    A    V+ I+  FR E  
Sbjct  58   ARDFLV--------PSRALGKFY----ALPQSPQLYKQLLMVAGFDRVFQIARCFRDEDL  105

Query  259  DTPRHLSEFYMLEAEMNFMDDLDSLTDAVEYVVRDLTRRLYQSPVGQEILTAKRSGESGQ  318
             T R   EF  L+ EM+F+D  D + D  E +++++ + +                    
Sbjct  106  RTDRQP-EFTQLDLEMSFVDYED-VMDLTEELIKEIFKEV--------------------  143

Query  319  DDAGNGAVPNLRQRWVDLMEGPRWRRITYTQAMELLEAAVARGEVSFEYAPTWTEGLQLE  378
                 G    L    +  ++ P + RITY +A+E L           +       G    
Sbjct  144  ----EGIAKELEGGTLLDLKKP-FPRITYAEAIEKLNG---------KDVEELGYGSDKP  189

Query  379  HEKYIVDVI---NGGQPVFVTDYPKAIKPFYMAPSHVAPGKEEDIRAPGETVACFDLLLP  435
              +++++++   N   P++VTD+P    PF M        K+ED  A       FDL+L 
Sbjct  190  DLRFLLELVIDKNKFNPLWVTDFPAEHHPFTMP-------KDEDDPA---LAEAFDLVLN  239

Query  436  EVSEVAGGSLREHRLPNI-IQNMRDHGLIKQRLYPAAGAGETPTTQTAPEQPLYPHLQPY  494
             V E+ GGS+R H  P +  +   + GL  +                             
Sbjct  240  GV-EIGGGSIRIHD-PELQEERFEEQGLDPEEAEE-------------------------  272

Query  495  EDLGHLQWYADLRRWGSAPHGGFGLGFDRFLSYLAGVSSVRDVVAFPR  542
                   +Y D  ++G+ PHGG G+G DR +  L G+ S+R+V+AFP+
Sbjct  273  ----KFGFYLDALKYGAPPHGGLGIGLDRLVMLLTGLESIREVIAFPK  316



Lambda      K        H        a         alpha
   0.318    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00027016

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  76.5    1e-16


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 76.5 bits (189),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 54/150 (36%), Gaps = 28/150 (19%)

Query  140  SPDFLRSIPHLRLRTPFNSVLSRFRSECLYQLGNVFRDAPNGGYVQVQPPLITSSDCEGA  199
              +      +L LR P      + RS+ +  + N   +    G+++V+ P++T S     
Sbjct  1    DEETRLKYRYLDLRRPKMQANLKLRSKIIKAIRNFLDE---NGFLEVETPILTKSATPEG  57

Query  200  GETFTVLPRETIMDPKSEGNHFFRAPKYLTVSSQLHLEAY-AAELGNVWAISPTFRAEKS  258
               F V        P      F+     L  S QL+ +    A    V+ I+  FR E  
Sbjct  58   ARDFLV--------PSRALGKFY----ALPQSPQLYKQLLMVAGFDRVFQIARCFRDEDL  105

Query  259  DTPRHL--------MEYV----VRDLTRRL  276
             T R          M +V    V DLT  L
Sbjct  106  RTDRQPEFTQLDLEMSFVDYEDVMDLTEEL  135



Lambda      K        H        a         alpha
   0.317    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00022242

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  212     1e-64


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 212 bits (542),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 95/408 (23%), Positives = 160/408 (39%), Gaps = 97/408 (24%)

Query  163  SPDFLRSIPHLRLRTPFNSVLSRFRSECLYQLGNVFRDAPNGGYVQVQPPLITSSDCEGA  222
              +      +L LR P      + RS+ +  + N   +    G+++V+ P++T S     
Sbjct  1    DEETRLKYRYLDLRRPKMQANLKLRSKIIKAIRNFLDE---NGFLEVETPILTKSATPEG  57

Query  223  GETFTVLPRETIMDPKSEGNHFFRAPKYLTVSSQLHLEAY-AAELGNVWAISPTFRAEKS  281
               F V        P      F+     L  S QL+ +    A    V+ I+  FR E  
Sbjct  58   ARDFLV--------PSRALGKFY----ALPQSPQLYKQLLMVAGFDRVFQIARCFRDEDL  105

Query  282  DTPRHLSEFYMLEAEMNFMDDLDSLTDAVEYVVRDLTRRLYQSPVGQEILTAKRSGESGQ  341
             T R   EF  L+ EM+F+D  D + D  E +++++ + +                    
Sbjct  106  RTDRQP-EFTQLDLEMSFVDYED-VMDLTEELIKEIFKEV--------------------  143

Query  342  DDAGNGAVPNLRQRWVDLMEGPRWRRITYTQAMELLEAAVARGEVSFEYAPTWTEGLQLE  401
                 G    L    +  ++ P + RITY +A+E L           +       G    
Sbjct  144  ----EGIAKELEGGTLLDLKKP-FPRITYAEAIEKLNG---------KDVEELGYGSDKP  189

Query  402  HEKYIVDVI---NGGQPVFVTDYPKAIKPFYMAPSHVAPGKEEDIRAPGETVACFDLLLP  458
              +++++++   N   P++VTD+P    PF M        K+ED  A       FDL+L 
Sbjct  190  DLRFLLELVIDKNKFNPLWVTDFPAEHHPFTMP-------KDEDDPA---LAEAFDLVLN  239

Query  459  EVSEVAGGSLREHRLPNI-IQNMRDHGLIKQRLYPAAGAGETPTTQTAPEQPLYPHLQPY  517
             V E+ GGS+R H  P +  +   + GL  +                             
Sbjct  240  GV-EIGGGSIRIHD-PELQEERFEEQGLDPEEAEE-------------------------  272

Query  518  EDLGHLQWYADLRRWGSAPHGGFGLGFDRFLSYLAGVSSVRDVVAFPR  565
                   +Y D  ++G+ PHGG G+G DR +  L G+ S+R+V+AFP+
Sbjct  273  ----KFGFYLDALKYGAPPHGGLGIGLDRLVMLLTGLESIREVIAFPK  316



Lambda      K        H        a         alpha
   0.318    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00022243

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00027017

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00022244

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0724    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00027019

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00027020

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462862 pfam09729, Gti1_Pac2, Gti1/Pac2 family. In S. pombe th...  186     1e-58


>CDD:462862 pfam09729, Gti1_Pac2, Gti1/Pac2 family.  In S. pombe the gti1 
protein promotes the onset of gluconate uptake upon glucose 
starvation. In S. pombe the Pac2 protein controls the onset 
of sexual development, by inhibiting the expression of ste11, 
in a pathway that is independent of the cAMP cascade.
Length=112

 Score = 186 bits (476),  Expect = 1e-58, Method: Composition-based stats.
 Identities = 66/145 (46%), Positives = 87/145 (60%), Gaps = 34/145 (23%)

Query  3    TYHGHVRTPADAIILFEACRIGLLPRVQRRLSEKERQS-IQSGSVFVWDEREAGMRRWTD  61
            T+ G++ T  DA+++FEACR GLLPRV RRL ++ER   I+SG+VFV+DE E+G++RWTD
Sbjct  1    TFTGYIETTLDALLIFEACRRGLLPRVPRRLHDRERPQLIRSGNVFVFDEEESGIKRWTD  60

Query  62   GKSWSASRVSGSFLTYREMEGKRGGTVTQPLRAGKTPDSRGSDDDRGDGADDGPDGYRYK  121
            G SWS SR+ G+FL YRE++ KR                                    K
Sbjct  61   GVSWSPSRILGNFLVYRELDKKRAS--------------------------------SKK  88

Query  122  PDGLMKQSFSITTSTGQHLHLISYY  146
            PDGL+K++ SIT   G  LHLISYY
Sbjct  89   PDGLVKKTISITL-NGVTLHLISYY  112



Lambda      K        H        a         alpha
   0.312    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00027021

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462862 pfam09729, Gti1_Pac2, Gti1/Pac2 family. In S. pombe th...  186     1e-58


>CDD:462862 pfam09729, Gti1_Pac2, Gti1/Pac2 family.  In S. pombe the gti1 
protein promotes the onset of gluconate uptake upon glucose 
starvation. In S. pombe the Pac2 protein controls the onset 
of sexual development, by inhibiting the expression of ste11, 
in a pathway that is independent of the cAMP cascade.
Length=112

 Score = 186 bits (476),  Expect = 1e-58, Method: Composition-based stats.
 Identities = 66/145 (46%), Positives = 87/145 (60%), Gaps = 34/145 (23%)

Query  3    TYHGHVRTPADAIILFEACRIGLLPRVQRRLSEKERQS-IQSGSVFVWDEREAGMRRWTD  61
            T+ G++ T  DA+++FEACR GLLPRV RRL ++ER   I+SG+VFV+DE E+G++RWTD
Sbjct  1    TFTGYIETTLDALLIFEACRRGLLPRVPRRLHDRERPQLIRSGNVFVFDEEESGIKRWTD  60

Query  62   GKSWSASRVSGSFLTYREMEGKRGGTVTQPLRAGKTPDSRGSDDDRGDGADDGPDGYRYK  121
            G SWS SR+ G+FL YRE++ KR                                    K
Sbjct  61   GVSWSPSRILGNFLVYRELDKKRAS--------------------------------SKK  88

Query  122  PDGLMKQSFSITTSTGQHLHLISYY  146
            PDGL+K++ SIT   G  LHLISYY
Sbjct  89   PDGLVKKTISITL-NGVTLHLISYY  112



Lambda      K        H        a         alpha
   0.312    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00022245

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462862 pfam09729, Gti1_Pac2, Gti1/Pac2 family. In S. pombe th...  186     1e-58


>CDD:462862 pfam09729, Gti1_Pac2, Gti1/Pac2 family.  In S. pombe the gti1 
protein promotes the onset of gluconate uptake upon glucose 
starvation. In S. pombe the Pac2 protein controls the onset 
of sexual development, by inhibiting the expression of ste11, 
in a pathway that is independent of the cAMP cascade.
Length=112

 Score = 186 bits (476),  Expect = 1e-58, Method: Composition-based stats.
 Identities = 66/145 (46%), Positives = 87/145 (60%), Gaps = 34/145 (23%)

Query  3    TYHGHVRTPADAIILFEACRIGLLPRVQRRLSEKERQS-IQSGSVFVWDEREAGMRRWTD  61
            T+ G++ T  DA+++FEACR GLLPRV RRL ++ER   I+SG+VFV+DE E+G++RWTD
Sbjct  1    TFTGYIETTLDALLIFEACRRGLLPRVPRRLHDRERPQLIRSGNVFVFDEEESGIKRWTD  60

Query  62   GKSWSASRVSGSFLTYREMEGKRGGTVTQPLRAGKTPDSRGSDDDRGDGADDGPDGYRYK  121
            G SWS SR+ G+FL YRE++ KR                                    K
Sbjct  61   GVSWSPSRILGNFLVYRELDKKRAS--------------------------------SKK  88

Query  122  PDGLMKQSFSITTSTGQHLHLISYY  146
            PDGL+K++ SIT   G  LHLISYY
Sbjct  89   PDGLVKKTISITL-NGVTLHLISYY  112



Lambda      K        H        a         alpha
   0.312    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00022248

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431232 pfam10361, DUF2434, Protein of unknown function (DUF24...  219     4e-73


>CDD:431232 pfam10361, DUF2434, Protein of unknown function (DUF2434).  This 
is a family of proteins conserved in fungi. The function 
is not known.
Length=294

 Score = 219 bits (561),  Expect = 4e-73, Method: Composition-based stats.
 Identities = 72/135 (53%), Positives = 98/135 (73%), Gaps = 4/135 (3%)

Query  41   YSNGTLSNGTDCYLAFQEFQPRMDENGTFVNGISCYAPIHGIGRHASIGMAFTAFFAVSM  100
            YSNGTLSNG++CYL F+ + P +  NGTF+NG SCY+PI+ IG   S+G+AF   FA+++
Sbjct  1    YSNGTLSNGSNCYLTFEPYTPTILPNGTFINGTSCYSPINPIGTRGSVGIAFAVLFALAI  60

Query  101  FLTMFNLQKHGRKYLPG----RTMGRRLKWLWLLFVAACGLVSCIMTVDVDRSHIQGPSL  156
             LT+ NL+KHGR YLP       +GRR +W W+LFVAAC L+S   ++DVDR ++QG  +
Sbjct  61   VLTLVNLRKHGRLYLPAEKRFYPIGRRWQWYWMLFVAACALISLFTSIDVDRYYLQGLPI  120

Query  157  ILQSVFYTLMTPGLM  171
            +LQS F+ LM PG M
Sbjct  121  VLQSFFWYLMLPGTM  135



Lambda      K        H        a         alpha
   0.327    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00027023

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00027024

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00027025

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00022249

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00022250

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00027026

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00027027

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00027033

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00027034

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461437 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger. CO...  76.7    2e-18


>CDD:461437 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger.  COPII-coated 
vesicles carry proteins from the endoplasmic reticulum 
to the Golgi complex. This vesicular transport can be reconstituted 
by using three cytosolic components containing five 
proteins: the small GTPase Sar1p, the Sec23p/24p complex, and 
the Sec13p/Sec31p complex. This domain is found to be zinc 
binding domain.
Length=38

 Score = 76.7 bits (190),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 24/38 (63%), Positives = 26/38 (68%), Gaps = 0/38 (0%)

Query  306  PPRCRRCRAYINPFMTFRSGGNKFVCNMCTFPNDVPPE  343
            P RCRRCRAY+NPF  F  GG K+ CN C   N VPPE
Sbjct  1    PVRCRRCRAYLNPFCQFDFGGKKWTCNFCGTRNPVPPE  38



Lambda      K        H        a         alpha
   0.316    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 573605296


Query= TCONS_00027035

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461437 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger. CO...  76.7    2e-18


>CDD:461437 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger.  COPII-coated 
vesicles carry proteins from the endoplasmic reticulum 
to the Golgi complex. This vesicular transport can be reconstituted 
by using three cytosolic components containing five 
proteins: the small GTPase Sar1p, the Sec23p/24p complex, and 
the Sec13p/Sec31p complex. This domain is found to be zinc 
binding domain.
Length=38

 Score = 76.7 bits (190),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 24/38 (63%), Positives = 26/38 (68%), Gaps = 0/38 (0%)

Query  306  PPRCRRCRAYINPFMTFRSGGNKFVCNMCTFPNDVPPE  343
            P RCRRCRAY+NPF  F  GG K+ CN C   N VPPE
Sbjct  1    PVRCRRCRAYLNPFCQFDFGGKKWTCNFCGTRNPVPPE  38



Lambda      K        H        a         alpha
   0.316    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 573605296


Query= TCONS_00022259

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461437 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger. CO...  76.7    2e-18


>CDD:461437 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger.  COPII-coated 
vesicles carry proteins from the endoplasmic reticulum 
to the Golgi complex. This vesicular transport can be reconstituted 
by using three cytosolic components containing five 
proteins: the small GTPase Sar1p, the Sec23p/24p complex, and 
the Sec13p/Sec31p complex. This domain is found to be zinc 
binding domain.
Length=38

 Score = 76.7 bits (190),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 24/38 (63%), Positives = 26/38 (68%), Gaps = 0/38 (0%)

Query  306  PPRCRRCRAYINPFMTFRSGGNKFVCNMCTFPNDVPPE  343
            P RCRRCRAY+NPF  F  GG K+ CN C   N VPPE
Sbjct  1    PVRCRRCRAYLNPFCQFDFGGKKWTCNFCGTRNPVPPE  38



Lambda      K        H        a         alpha
   0.316    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 573605296


Query= TCONS_00022258

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461437 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger. CO...  76.7    2e-18


>CDD:461437 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger.  COPII-coated 
vesicles carry proteins from the endoplasmic reticulum 
to the Golgi complex. This vesicular transport can be reconstituted 
by using three cytosolic components containing five 
proteins: the small GTPase Sar1p, the Sec23p/24p complex, and 
the Sec13p/Sec31p complex. This domain is found to be zinc 
binding domain.
Length=38

 Score = 76.7 bits (190),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 24/38 (63%), Positives = 26/38 (68%), Gaps = 0/38 (0%)

Query  306  PPRCRRCRAYINPFMTFRSGGNKFVCNMCTFPNDVPPE  343
            P RCRRCRAY+NPF  F  GG K+ CN C   N VPPE
Sbjct  1    PVRCRRCRAYLNPFCQFDFGGKKWTCNFCGTRNPVPPE  38



Lambda      K        H        a         alpha
   0.316    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 573605296


Query= TCONS_00027036

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              112     2e-28


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 112 bits (282),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 73/324 (23%), Positives = 133/324 (41%), Gaps = 23/324 (7%)

Query  29   STVSYAISILGILGSVPATFGAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTA  88
              +S    ++G +          +A+GGPA  VW W      ++ +G   AEL SA P +
Sbjct  2    GLLSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRS  61

Query  89   GGMYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSP  148
            GG+Y   ++          +++ GW N      G++S A   +  LL+  ++  +   + 
Sbjct  62   GGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLS--ALGPDLVPTT  115

Query  149  YKSLLL----------VSRRFKANAETLHRIVFWFAPINISATVCICLMLLYLTPDKQSA  198
            + +  +          ++ R    +  +  I+     + +   + I L L+       + 
Sbjct  116  WLTYGIAIAILIIFAIINIRGVRESAKIQNILGILK-LLLPLILIIILGLVTADGGGFNL  174

Query  199  RWVFTHFTDGSGWGSKLFSFLLGFISVAWTMTDYDGTTHMSEETHDAASLGPLAIQSAVL  258
                 H     GW         GF+ V W+ T ++   ++SEE        P AI   V+
Sbjct  175  LSGEWHTFFPDGWPG----VFAGFLGVLWSFTGFESAANVSEEVKKRNV--PKAIFIGVI  228

Query  259  VSGIMGWVLTISMCFCLTDLDSILRTPTGLPAAQIFLNAGGKTGGTIMWGFAILVQFFTG  318
            + G++  ++ I+    + D +  L +  G  AA +F   GGK G  I+     L      
Sbjct  229  IVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLLGAV  288

Query  319  CSAMLADTRMAYAFARDEALPFSS  342
             +A++  +R+ YA ARD  LPFS 
Sbjct  289  NTAIVGASRLLYALARDGVLPFSR  312



Lambda      K        H        a         alpha
   0.324    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00022268

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              151     2e-41
CDD:366028 pfam00324, AA_permease, Amino acid permease                62.7    5e-11


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 151 bits (384),  Expect = 2e-41, Method: Composition-based stats.
 Identities = 102/441 (23%), Positives = 181/441 (41%), Gaps = 38/441 (9%)

Query  29   STVSYAISILGILGSVPATFGAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTA  88
              +S    ++G +          +A+GGPA  VW W      ++ +G   AEL SA P +
Sbjct  2    GLLSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRS  61

Query  89   GGMYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSP  148
            GG+Y   ++          +++ GW N      G++S A   +  LL+    +   +   
Sbjct  62   GGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLSALGPDLVPTTWL  117

Query  149  YKSL---------LLVSRRFKANAETLHR--------------IVFWFAPINNKQSARWV  185
               +         ++  R  + +A+  +               I+          +    
Sbjct  118  TYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFNLLSG  177

Query  186  FTHFTDGSGWGSKLFSFLLGFISVAWTMTDYDGTTHMSEETHDAASLGPLAIQSAVLVSG  245
              H     GW         GF+ V W+ T ++   ++SEE        P AI   V++ G
Sbjct  178  EWHTFFPDGWPG----VFAGFLGVLWSFTGFESAANVSEEVKKRNV--PKAIFIGVIIVG  231

Query  246  IMGWVLTISMCFCLTDLDSILRTPTGLPAAQIFLNAGGKTGGTIMWGFAILVQFFTGCSA  305
            ++  ++ I+    + D +  L +  G  AA +F   GGK G  I+     L       +A
Sbjct  232  VLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLLGAVNTA  291

Query  306  MLADTRMAYAFARDEALPFSSFLSEVNKYTHTPVNAVWFVVLFSIGLNCIAIGSTQTATA  365
            ++  +R+ YA ARD  LPFS F ++VNK+  +P+ A+    + S+ L  + + S     A
Sbjct  292  IVGASRLLYALARDGVLPFSRFFAKVNKF-GSPIRAIILTAILSLILLLLFLLSPAAYNA  350

Query  366  IFSITAPALDISYVSVILAHRLYKDKVKFVEGPFTLGKWGAAINWVSIVWVLFISTVLFF  425
            + S++A    +SY+  I+   + + K                +    I++ LF+   LFF
Sbjct  351  LLSLSAYGYLLSYLLPIIGLLILRKKRPD----LGRIPGRWPVAIFGILFSLFLIVALFF  406

Query  426  PPTVPVTASNMNYAICVGAFI  446
            PP  P T S++NYAI +    
Sbjct  407  PPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 62.7 bits (153),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 82/473 (17%), Positives = 158/473 (33%), Gaps = 64/473 (14%)

Query  35   ISILGILGSVPATF----GAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTAGG  90
            + ++ + G +        G+ L   GPA A+  + +   +   +  S+ E+ +  P +GG
Sbjct  2    VQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGG  61

Query  91   MYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSPYK  150
             Y      +     P   +  GW N       V ++  T + +L+    +  +  Y    
Sbjct  62   FYTYASRFLG----PSLGFATGW-NYWLSWITVLALELTAASILIQFWELVPDIPYLWVW  116

Query  151  SLL---------LVSRRFKANAETLHRIVFWFAPI-----------------NNKQSARW  184
              +         LV  ++   AE      FWFA I                     +   
Sbjct  117  GAVFLVLLTIINLVGVKWYGEAE------FWFALIKIIAIIGFIIVGIILLSGGNPNDGA  170

Query  185  VFTHFTDGSGWGSKLFSFLLGFISVAWT-MTDYDGT---THMSEETHDAASLGPLAIQSA  240
            +F +  D  G  +    F  GFISV       + G       + E  +     P AI   
Sbjct  171  IFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQV  230

Query  241  VLVSGI--MGWVLTISMCFCLTDLDSILRTPTGLPAAQIFL-NAGGKTGGTIMWGFAILV  297
            +    I  +  +L I +     D   +  + +      IF    G      ++    +  
Sbjct  231  IWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTA  290

Query  298  QFFTGCSAMLADTRMAYAFARDEALPFSSFLSEVNKYTHTPVNAVWFVVLFSIGLNCIAI  357
                  S++ + +RM Y+ ARD   P   FL +V+K    P+ A+   ++ S+    +A 
Sbjct  291  ALSAANSSLYSGSRMLYSLARDGLAPK--FLKKVDKR-GVPLRAILVSMVISLLALLLAS  347

Query  358  GSTQTATAIF-SITAPALDISYVSVILAH-------RLYKDKVKFVEGPFTLGKWGAAIN  409
             +         +I+  +  I +  + L+H       +     +  +     LG  G  I 
Sbjct  348  LNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLG-VIL  406

Query  410  WVSIVWVLFISTVLFFPPTVPVTASNMNYAICVGAFIAAF----ALFWWWAYA  458
             ++ + ++ I   L+    VP    N        A++        L     + 
Sbjct  407  GLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILIGVKLHV  459



Lambda      K        H        a         alpha
   0.325    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00022265

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              170     2e-48
CDD:366028 pfam00324, AA_permease, Amino acid permease                82.4    3e-17


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 170 bits (433),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 110/445 (25%), Positives = 189/445 (42%), Gaps = 21/445 (5%)

Query  29   STVSYAISILGILGSVPATFGAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTA  88
              +S    ++G +          +A+GGPA  VW W      ++ +G   AEL SA P +
Sbjct  2    GLLSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRS  61

Query  89   GGMYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSP  148
            GG+Y   ++          +++ GW N      G++S A   +  LL+           P
Sbjct  62   GGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLSALGP----DLVP  113

Query  149  TAMQTVALSIVILCVLGVICSLTTKTLHRIVFWFAPINISATVC--ICLMLLYLTPDKQS  206
            T   T  ++I IL +  +I     +   +I      + +   +   I L L+       +
Sbjct  114  TTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFN  173

Query  207  ARWVFTHFTDGSGWGSKLFSFLLGFISVAWTMTDYDGTTHMSEETHDAASLGPLAIQSAV  266
                  H     GW         GF+ V W+ T ++   ++SEE        P AI   V
Sbjct  174  LLSGEWHTFFPDGWPG----VFAGFLGVLWSFTGFESAANVSEEVKKRNV--PKAIFIGV  227

Query  267  LVSGIMGWVLTISMCFCLTDLDSILRTPTGLPAAQIFLNAGGKTGGTIMWGFAILVQFFT  326
            ++ G++  ++ I+    + D +  L +  G  AA +F   GGK G  I+     L     
Sbjct  228  IIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLLGA  287

Query  327  GCSAMLADTRMAYAFARDEALPFSSFLSEVNKYTHTPVNAVWFVVLFSIGLNCIAIGSTQ  386
              +A++  +R+ YA ARD  LPFS F ++VNK+  +P+ A+    + S+ L  + + S  
Sbjct  288  VNTAIVGASRLLYALARDGVLPFSRFFAKVNKF-GSPIRAIILTAILSLILLLLFLLSPA  346

Query  387  TATAIFSITAPALDISYVSVILAHRLYKDKVKFVEGPFTLGKWGAAINWVSIVWVLFIST  446
               A+ S++A    +SY+  I+   + + K                +    I++ LF+  
Sbjct  347  AYNALLSLSAYGYLLSYLLPIIGLLILRKKRPD----LGRIPGRWPVAIFGILFSLFLIV  402

Query  447  VLFFPPTVPVTASNMNYAICVGAFI  471
             LFFPP  P T S++NYAI +    
Sbjct  403  ALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 82.4 bits (204),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 89/474 (19%), Positives = 170/474 (36%), Gaps = 37/474 (8%)

Query  35   ISILGILGSVPATF----GAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTAGG  90
            + ++ + G +        G+ L   GPA A+  + +   +   +  S+ E+ +  P +GG
Sbjct  2    VQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGG  61

Query  91   MYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSPTA  150
             Y      +     P   +  GW N       V ++  T + +L+    +  +  Y    
Sbjct  62   FYTYASRFLG----PSLGFATGW-NYWLSWITVLALELTAASILIQFWELVPDIPY----  112

Query  151  MQTVALSIVILCVLGVICSLTTKTLHRIVFWFAPINISATVC-ICLMLLYLTPDKQSARW  209
                    V L +L +I  +  K      FWFA I I A +  I + ++ L+    +   
Sbjct  113  --LWVWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGA  170

Query  210  VFTHFTDGSGWGSKLFSFLLGFISVAWT-MTDYDGT---THMSEETHDAASLGPLAIQSA  265
            +F +  D  G  +    F  GFISV       + G       + E  +     P AI   
Sbjct  171  IFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQV  230

Query  266  VLVSGI--MGWVLTISMCFCLTDLDSILRTPTGLPAAQIFL-NAGGKTGGTIMWGFAILV  322
            +    I  +  +L I +     D   +  + +      IF    G      ++    +  
Sbjct  231  IWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTA  290

Query  323  QFFTGCSAMLADTRMAYAFARDEALPFSSFLSEVNKYTHTPVNAVWFVVLFSIGLNCIAI  382
                  S++ + +RM Y+ ARD   P   FL +V+K    P+ A+   ++ S+    +A 
Sbjct  291  ALSAANSSLYSGSRMLYSLARDGLAPK--FLKKVDKR-GVPLRAILVSMVISLLALLLAS  347

Query  383  GSTQTATAIF-SITAPALDISYVSVILAH-------RLYKDKVKFVEGPFTLGKWGAAIN  434
             +         +I+  +  I +  + L+H       +     +  +     LG  G  I 
Sbjct  348  LNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLG-VIL  406

Query  435  WVSIVWVLFISTVLFFPPTVPVTASNMNYAICVGAFIAA--FALFWWWAYAHGK  486
             ++ + ++ I   L+    VP    N        A++    F +       H K
Sbjct  407  GLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILIGVKLHVK  460



Lambda      K        H        a         alpha
   0.325    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00022262

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              170     2e-48
CDD:366028 pfam00324, AA_permease, Amino acid permease                82.4    3e-17


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 170 bits (433),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 110/445 (25%), Positives = 189/445 (42%), Gaps = 21/445 (5%)

Query  29   STVSYAISILGILGSVPATFGAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTA  88
              +S    ++G +          +A+GGPA  VW W      ++ +G   AEL SA P +
Sbjct  2    GLLSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRS  61

Query  89   GGMYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSP  148
            GG+Y   ++          +++ GW N      G++S A   +  LL+           P
Sbjct  62   GGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLSALGP----DLVP  113

Query  149  TAMQTVALSIVILCVLGVICSLTTKTLHRIVFWFAPINISATVC--ICLMLLYLTPDKQS  206
            T   T  ++I IL +  +I     +   +I      + +   +   I L L+       +
Sbjct  114  TTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFN  173

Query  207  ARWVFTHFTDGSGWGSKLFSFLLGFISVAWTMTDYDGTTHMSEETHDAASLGPLAIQSAV  266
                  H     GW         GF+ V W+ T ++   ++SEE        P AI   V
Sbjct  174  LLSGEWHTFFPDGWPG----VFAGFLGVLWSFTGFESAANVSEEVKKRNV--PKAIFIGV  227

Query  267  LVSGIMGWVLTISMCFCLTDLDSILRTPTGLPAAQIFLNAGGKTGGTIMWGFAILVQFFT  326
            ++ G++  ++ I+    + D +  L +  G  AA +F   GGK G  I+     L     
Sbjct  228  IIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLLGA  287

Query  327  GCSAMLADTRMAYAFARDEALPFSSFLSEVNKYTHTPVNAVWFVVLFSIGLNCIAIGSTQ  386
              +A++  +R+ YA ARD  LPFS F ++VNK+  +P+ A+    + S+ L  + + S  
Sbjct  288  VNTAIVGASRLLYALARDGVLPFSRFFAKVNKF-GSPIRAIILTAILSLILLLLFLLSPA  346

Query  387  TATAIFSITAPALDISYVSVILAHRLYKDKVKFVEGPFTLGKWGAAINWVSIVWVLFIST  446
               A+ S++A    +SY+  I+   + + K                +    I++ LF+  
Sbjct  347  AYNALLSLSAYGYLLSYLLPIIGLLILRKKRPD----LGRIPGRWPVAIFGILFSLFLIV  402

Query  447  VLFFPPTVPVTASNMNYAICVGAFI  471
             LFFPP  P T S++NYAI +    
Sbjct  403  ALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 82.4 bits (204),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 89/474 (19%), Positives = 170/474 (36%), Gaps = 37/474 (8%)

Query  35   ISILGILGSVPATF----GAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTAGG  90
            + ++ + G +        G+ L   GPA A+  + +   +   +  S+ E+ +  P +GG
Sbjct  2    VQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGG  61

Query  91   MYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSPTA  150
             Y      +     P   +  GW N       V ++  T + +L+    +  +  Y    
Sbjct  62   FYTYASRFLG----PSLGFATGW-NYWLSWITVLALELTAASILIQFWELVPDIPY----  112

Query  151  MQTVALSIVILCVLGVICSLTTKTLHRIVFWFAPINISATVC-ICLMLLYLTPDKQSARW  209
                    V L +L +I  +  K      FWFA I I A +  I + ++ L+    +   
Sbjct  113  --LWVWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGA  170

Query  210  VFTHFTDGSGWGSKLFSFLLGFISVAWT-MTDYDGT---THMSEETHDAASLGPLAIQSA  265
            +F +  D  G  +    F  GFISV       + G       + E  +     P AI   
Sbjct  171  IFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQV  230

Query  266  VLVSGI--MGWVLTISMCFCLTDLDSILRTPTGLPAAQIFL-NAGGKTGGTIMWGFAILV  322
            +    I  +  +L I +     D   +  + +      IF    G      ++    +  
Sbjct  231  IWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTA  290

Query  323  QFFTGCSAMLADTRMAYAFARDEALPFSSFLSEVNKYTHTPVNAVWFVVLFSIGLNCIAI  382
                  S++ + +RM Y+ ARD   P   FL +V+K    P+ A+   ++ S+    +A 
Sbjct  291  ALSAANSSLYSGSRMLYSLARDGLAPK--FLKKVDKR-GVPLRAILVSMVISLLALLLAS  347

Query  383  GSTQTATAIF-SITAPALDISYVSVILAH-------RLYKDKVKFVEGPFTLGKWGAAIN  434
             +         +I+  +  I +  + L+H       +     +  +     LG  G  I 
Sbjct  348  LNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLG-VIL  406

Query  435  WVSIVWVLFISTVLFFPPTVPVTASNMNYAICVGAFIAA--FALFWWWAYAHGK  486
             ++ + ++ I   L+    VP    N        A++    F +       H K
Sbjct  407  GLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILIGVKLHVK  460



Lambda      K        H        a         alpha
   0.325    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00022261

Length=482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              157     2e-43
CDD:366028 pfam00324, AA_permease, Amino acid permease                65.8    4e-12


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 157 bits (398),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 101/443 (23%), Positives = 182/443 (41%), Gaps = 42/443 (9%)

Query  29   STVSYAISILGILGSVPATFGAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTA  88
              +S    ++G +          +A+GGPA  VW W      ++ +G   AEL SA P +
Sbjct  2    GLLSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRS  61

Query  89   GGMYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSP  148
            GG+Y   ++          +++ GW N      G++S A   +  LL+  ++  +   + 
Sbjct  62   GGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLS--ALGPDLVPTT  115

Query  149  YKSLLL----------VSRRFKANAETLHRIVFWF---------------APINNKQSAR  183
            + +  +          ++ R    +  +  I+                         +  
Sbjct  116  WLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFNLL  175

Query  184  WVFTHFTDGSGWGSKLFSFLLGFISVAWTMTDYDGTTHMSEETHDAASLGPLAIQSAVLV  243
                H     GW         GF+ V W+ T ++   ++SEE        P AI   V++
Sbjct  176  SGEWHTFFPDGWPG----VFAGFLGVLWSFTGFESAANVSEEVKKRNV--PKAIFIGVII  229

Query  244  SGIMGWVLTISMCFCLTDLDSILRTPTGLPAAQIFLNAGGKTGGTIMWGFAILVQFFTGC  303
             G++  ++ I+    + D +  L +  G  AA +F   GGK G  I+     L       
Sbjct  230  VGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLLGAVN  289

Query  304  SAMLADTRMAYAFARDEALPFSSFLSEVNKYTHTPVNAVWFVVLFSIGLNCIAIGSTQTA  363
            +A++  +R+ YA ARD  LPFS F ++VNK+  +P+ A+    + S+ L  + + S    
Sbjct  290  TAIVGASRLLYALARDGVLPFSRFFAKVNKF-GSPIRAIILTAILSLILLLLFLLSPAAY  348

Query  364  TAIFSITAPALDISYVSVILAHRLYKDKVKFVEGPFTLGKWGAAINWVSIVWVLFISTVL  423
             A+ S++A    +SY+  I+   + + K                +    I++ LF+   L
Sbjct  349  NALLSLSAYGYLLSYLLPIIGLLILRKKRPD----LGRIPGRWPVAIFGILFSLFLIVAL  404

Query  424  FFPPTVPVTASNMNYAICVGAFI  446
            FFPP  P T S++NYAI +    
Sbjct  405  FFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 65.8 bits (161),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 82/473 (17%), Positives = 158/473 (33%), Gaps = 64/473 (14%)

Query  35   ISILGILGSVPATF----GAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTAGG  90
            + ++ + G +        G+ L   GPA A+  + +   +   +  S+ E+ +  P +GG
Sbjct  2    VQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGG  61

Query  91   MYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSPYK  150
             Y      +     P   +  GW N       V ++  T + +L+    +  +  Y    
Sbjct  62   FYTYASRFLG----PSLGFATGW-NYWLSWITVLALELTAASILIQFWELVPDIPYLWVW  116

Query  151  SLL---------LVSRRFKANAETLHRIVFWFAPI-----------------NNKQSARW  184
              +         LV  ++   AE      FWFA I                     +   
Sbjct  117  GAVFLVLLTIINLVGVKWYGEAE------FWFALIKIIAIIGFIIVGIILLSGGNPNDGA  170

Query  185  VFTHFTDGSGWGSKLFSFLLGFISVAWT-MTDYDGT---THMSEETHDAASLGPLAIQSA  240
            +F +  D  G  +    F  GFISV       + G       + E  +     P AI   
Sbjct  171  IFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQV  230

Query  241  VLVSGI--MGWVLTISMCFCLTDLDSILRTPTGLPAAQIFL-NAGGKTGGTIMWGFAILV  297
            +    I  +  +L I +     D   +  + +      IF    G      ++    +  
Sbjct  231  IWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTA  290

Query  298  QFFTGCSAMLADTRMAYAFARDEALPFSSFLSEVNKYTHTPVNAVWFVVLFSIGLNCIAI  357
                  S++ + +RM Y+ ARD   P   FL +V+K    P+ A+   ++ S+    +A 
Sbjct  291  ALSAANSSLYSGSRMLYSLARDGLAPK--FLKKVDKR-GVPLRAILVSMVISLLALLLAS  347

Query  358  GSTQTATAIF-SITAPALDISYVSVILAH-------RLYKDKVKFVEGPFTLGKWGAAIN  409
             +         +I+  +  I +  + L+H       +     +  +     LG  G  I 
Sbjct  348  LNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLG-VIL  406

Query  410  WVSIVWVLFISTVLFFPPTVPVTASNMNYAICVGAFIAAF----ALFWWWAYA  458
             ++ + ++ I   L+    VP    N        A++        L     + 
Sbjct  407  GLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILIGVKLHV  459



Lambda      K        H        a         alpha
   0.324    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 591999806


Query= TCONS_00022260

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              120     4e-31
CDD:366028 pfam00324, AA_permease, Amino acid permease                64.3    7e-12


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 120 bits (302),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 133/325 (41%), Gaps = 16/325 (5%)

Query  29   STVSYAISILGILGSVPATFGAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTA  88
              +S    ++G +          +A+GGPA  VW W      ++ +G   AEL SA P +
Sbjct  2    GLLSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRS  61

Query  89   GGMYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSP  148
            GG+Y   ++          +++ GW N      G++S A   +  LL+           P
Sbjct  62   GGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLSALGP----DLVP  113

Query  149  TAMQTVALSIVILCVLGVICSLTTKTLHRIVFWFAPINISATVC--ICLMLLYLTPDKQS  206
            T   T  ++I IL +  +I     +   +I      + +   +   I L L+       +
Sbjct  114  TTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFN  173

Query  207  ARWVFTHFTDGSGWGSKLFSFLLGFISVAWTMTDYDGTTHMSEETHDAASLGPLAIQSAV  266
                  H     GW         GF+ V W+ T ++   ++SEE        P AI   V
Sbjct  174  LLSGEWHTFFPDGWPG----VFAGFLGVLWSFTGFESAANVSEEVKKRNV--PKAIFIGV  227

Query  267  LVSGIMGWVLTISMCFCLTDLDSILRTPTGLPAAQIFLNAGGKTGGTIMWGFAILVQFFT  326
            ++ G++  ++ I+    + D +  L +  G  AA +F   GGK G  I+     L     
Sbjct  228  IIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLLGA  287

Query  327  GCSAMLADTRMAYAFARDEALPFSS  351
              +A++  +R+ YA ARD  LPFS 
Sbjct  288  VNTAIVGASRLLYALARDGVLPFSR  312


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 64.3 bits (157),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 64/327 (20%), Positives = 118/327 (36%), Gaps = 23/327 (7%)

Query  35   ISILGILGSVPATF----GAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTAGG  90
            + ++ + G +        G+ L   GPA A+  + +   +   +  S+ E+ +  P +GG
Sbjct  2    VQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGG  61

Query  91   MYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSPTA  150
             Y      +     P   +  GW N       V ++  T + +L+    +  +  Y    
Sbjct  62   FYTYASRFLG----PSLGFATGW-NYWLSWITVLALELTAASILIQFWELVPDIPY----  112

Query  151  MQTVALSIVILCVLGVICSLTTKTLHRIVFWFAPINISATVC-ICLMLLYLTPDKQSARW  209
                    V L +L +I  +  K      FWFA I I A +  I + ++ L+    +   
Sbjct  113  --LWVWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGA  170

Query  210  VFTHFTDGSGWGSKLFSFLLGFISVAWT-MTDYDGT---THMSEETHDAASLGPLAIQSA  265
            +F +  D  G  +    F  GFISV       + G       + E  +     P AI   
Sbjct  171  IFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQV  230

Query  266  VLVSGI--MGWVLTISMCFCLTDLDSILRTPTGLPAAQIFL-NAGGKTGGTIMWGFAILV  322
            +    I  +  +L I +     D   +  + +      IF    G      ++    +  
Sbjct  231  IWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTA  290

Query  323  QFFTGCSAMLADTRMAYAFARDEALPF  349
                  S++ + +RM Y+ ARD   P 
Sbjct  291  ALSAANSSLYSGSRMLYSLARDGLAPK  317



Lambda      K        H        a         alpha
   0.325    0.135    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00022263

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              159     9e-45
CDD:366028 pfam00324, AA_permease, Amino acid permease                74.3    1e-14


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 159 bits (405),  Expect = 9e-45, Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 184/435 (42%), Gaps = 21/435 (5%)

Query  29   STVSYAISILGILGSVPATFGAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTA  88
              +S    ++G +          +A+GGPA  VW W      ++ +G   AEL SA P +
Sbjct  2    GLLSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRS  61

Query  89   GGMYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSP  148
            GG+Y   ++          +++ GW N      G++S A   +  LL+           P
Sbjct  62   GGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLSALGP----DLVP  113

Query  149  TAMQTVALSIVILCVLGVICSLTTKTLHRIVFWFAPINISATVC--ICLMLLYLTPDKQS  206
            T   T  ++I IL +  +I     +   +I      + +   +   I L L+       +
Sbjct  114  TTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFN  173

Query  207  ARWVFTHFTDGSGWGSKLFSFLLGFISVAWTMTDYDGTTHMSEETHDAASLGPLAIQSAV  266
                  H     GW         GF+ V W+ T ++   ++SEE        P AI   V
Sbjct  174  LLSGEWHTFFPDGWPG----VFAGFLGVLWSFTGFESAANVSEEVKKRNV--PKAIFIGV  227

Query  267  LVSGIMGWVLTISMCFCLTDLDSILRTPTGLPAAQIFLNAGGKTGGTIMWGFAILVQFFT  326
            ++ G++  ++ I+    + D +  L +  G  AA +F   GGK G  I+     L     
Sbjct  228  IIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLLGA  287

Query  327  GCSAMLADTRMAYAFARDEALPFSSFLSEVNKYTHTPVNAVWFVVLFSIGLNCIAIGSTQ  386
              +A++  +R+ YA ARD  LPFS F ++VNK+  +P+ A+    + S+ L  + + S  
Sbjct  288  VNTAIVGASRLLYALARDGVLPFSRFFAKVNKF-GSPIRAIILTAILSLILLLLFLLSPA  346

Query  387  TATAIFSITAPALDISYVSVILAHRLYKDKVKFVEGPFTLGKWGAAINWVSIVWVLFIST  446
               A+ S++A    +SY+  I+   + + K                +    I++ LF+  
Sbjct  347  AYNALLSLSAYGYLLSYLLPIIGLLILRKKRPD----LGRIPGRWPVAIFGILFSLFLIV  402

Query  447  VLFFPPTVPVTASNM  461
             LFFPP  P T S++
Sbjct  403  ALFFPPVGPATGSSL  417


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 74.3 bits (183),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 154/428 (36%), Gaps = 28/428 (7%)

Query  35   ISILGILGSVPATF----GAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTAGG  90
            + ++ + G +        G+ L   GPA A+  + +   +   +  S+ E+ +  P +GG
Sbjct  2    VQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGG  61

Query  91   MYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSPTA  150
             Y      +     P   +  GW N       V ++  T + +L+    +  +  Y    
Sbjct  62   FYTYASRFLG----PSLGFATGW-NYWLSWITVLALELTAASILIQFWELVPDIPY----  112

Query  151  MQTVALSIVILCVLGVICSLTTKTLHRIVFWFAPINISATVC-ICLMLLYLTPDKQSARW  209
                    V L +L +I  +  K      FWFA I I A +  I + ++ L+    +   
Sbjct  113  --LWVWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGA  170

Query  210  VFTHFTDGSGWGSKLFSFLLGFISVAWT-MTDYDGT---THMSEETHDAASLGPLAIQSA  265
            +F +  D  G  +    F  GFISV       + G       + E  +     P AI   
Sbjct  171  IFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQV  230

Query  266  VLVSGI--MGWVLTISMCFCLTDLDSILRTPTGLPAAQIFL-NAGGKTGGTIMWGFAILV  322
            +    I  +  +L I +     D   +  + +      IF    G      ++    +  
Sbjct  231  IWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTA  290

Query  323  QFFTGCSAMLADTRMAYAFARDEALPFSSFLSEVNKYTHTPVNAVWFVVLFSIGLNCIAI  382
                  S++ + +RM Y+ ARD   P   FL +V+K    P+ A+   ++ S+    +A 
Sbjct  291  ALSAANSSLYSGSRMLYSLARDGLAPK--FLKKVDKR-GVPLRAILVSMVISLLALLLAS  347

Query  383  GSTQTATAIF-SITAPALDISYVSVILAH-RLYKDKVKFVEGPFTLGKWGAAINWVSIVW  440
             +         +I+  +  I +  + L+H R  K           L           I+ 
Sbjct  348  LNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILG  407

Query  441  VLFISTVL  448
            +  I  +L
Sbjct  408  LAAIIIIL  415



Lambda      K        H        a         alpha
   0.325    0.136    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 569004184


Query= TCONS_00027037

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              120     2e-31


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 120 bits (304),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 72/278 (26%), Positives = 122/278 (44%), Gaps = 11/278 (4%)

Query  28   IVFWFAPINNKQSARWVFTHFTDGSGWGSKLFSFLLGFISVAWTMTDYDGTTHMSEETHD  87
            I+          +      H     GW         GF+ V W+ T ++   ++SEE   
Sbjct  161  ILGLVTADGGGFNLLSGEWHTFFPDGWPG----VFAGFLGVLWSFTGFESAANVSEEVKK  216

Query  88   AASLGPLAIQSAVLVSGIMGWVLTISMCFCLTDLDSILRTPTGLPAAQIFLNAGGKTGGT  147
                 P AI   V++ G++  ++ I+    + D +  L +  G  AA +F   GGK G  
Sbjct  217  RNV--PKAIFIGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAI  274

Query  148  IMWGFAILVQFFTGCSAMLADTRMAYAFARDEALPFSSFLSEVNKYTHTPVNAVWFVVLF  207
            I+     L       +A++  +R+ YA ARD  LPFS F ++VNK+  +P+ A+    + 
Sbjct  275  IVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKF-GSPIRAIILTAIL  333

Query  208  SIGLNCIAIGSTQTATAIFSITAPALDISYVSVILAHRLYKDKVKFVEGPFTLGKWGAAI  267
            S+ L  + + S     A+ S++A    +SY+  I+   + + K                +
Sbjct  334  SLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPD----LGRIPGRWPV  389

Query  268  NWVSIVWVLFISTVLFFPPTVPVTASNMNYAICVGAFI  305
                I++ LF+   LFFPP  P T S++NYAI +    
Sbjct  390  AIFGILFSLFLIVALFFPPVGPATGSSLNYAIILIVAF  427



Lambda      K        H        a         alpha
   0.326    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00027039

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              157     2e-43
CDD:366028 pfam00324, AA_permease, Amino acid permease                76.6    2e-15


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 157 bits (400),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 110/449 (24%), Positives = 189/449 (42%), Gaps = 25/449 (6%)

Query  29   STVSYAISILGILGSVPATFGAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTA  88
              +S    ++G +          +A+GGPA  VW W      ++ +G   AEL SA P +
Sbjct  2    GLLSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRS  61

Query  89   GGMYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSP  148
            GG+Y   ++          +++ GW N      G++S A   +  LL+           P
Sbjct  62   GGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLSALGP----DLVP  113

Query  149  TAMQTVALSIVILCVLGVICSLTTKTLHRIVFWFAPINISATVC--ICLMLLYLTPDKQS  206
            T   T  ++I IL +  +I     +   +I      + +   +   I L L+       +
Sbjct  114  TTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFN  173

Query  207  ARWVFTHFTDGSGWGSKLFSFLLGFISVAWTMTDYDGTTHMSEETHDAASLGPLAIQSAV  266
                  H     GW         GF+ V W+ T ++   ++SEE        P AI   V
Sbjct  174  LLSGEWHTFFPDGWPG----VFAGFLGVLWSFTGFESAANVSEEVKKRNV--PKAIFIGV  227

Query  267  LVSGIMGWVLTISMCFCLTDLDSILRTPTGLPAAQIFLNAGGKTGGTIMWGFAILVQFFT  326
            ++ G++  ++ I+    + D +  L +  G  AA +F   GGK G  I+     L     
Sbjct  228  IIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLLGA  287

Query  327  GCSAMLADTRMAYAFARDEALPFSSTIVSFLSEVNKYTHTPVNAVWFVVLFSIGLNCIAI  386
              +A++  +R+ YA ARD  LPFS     F ++VNK+  +P+ A+    + S+ L  + +
Sbjct  288  VNTAIVGASRLLYALARDGVLPFS----RFFAKVNKF-GSPIRAIILTAILSLILLLLFL  342

Query  387  GSTQTATAIFSITAPALDISYVSVILAHRLYKDKVKFVEGPFTLGKWGAAINWVSIVWVL  446
             S     A+ S++A    +SY+  I+   + + K                +    I++ L
Sbjct  343  LSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPD----LGRIPGRWPVAIFGILFSL  398

Query  447  FISTVLFFPPTVPVTASNMNYAICVGAFI  475
            F+   LFFPP  P T S++NYAI +    
Sbjct  399  FLIVALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 76.6 bits (189),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 87/477 (18%), Positives = 168/477 (35%), Gaps = 43/477 (9%)

Query  35   ISILGILGSVPATF----GAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTAGG  90
            + ++ + G +        G+ L   GPA A+  + +   +   +  S+ E+ +  P +GG
Sbjct  2    VQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGG  61

Query  91   MYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSPTA  150
             Y      +     P   +  GW N       V ++  T + +L+    +  +  Y    
Sbjct  62   FYTYASRFLG----PSLGFATGW-NYWLSWITVLALELTAASILIQFWELVPDIPY----  112

Query  151  MQTVALSIVILCVLGVICSLTTKTLHRIVFWFAPINISATVC-ICLMLLYLTPDKQSARW  209
                    V L +L +I  +  K      FWFA I I A +  I + ++ L+    +   
Sbjct  113  --LWVWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGA  170

Query  210  VFTHFTDGSGWGSKLFSFLLGFISVAWT-MTDYDGT---THMSEETHDAASLGPLAIQSA  265
            +F +  D  G  +    F  GFISV       + G       + E  +     P AI   
Sbjct  171  IFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQV  230

Query  266  VLVSGI--MGWVLTISMCFCLTDLDSILRTPTGLPAAQIFL-NAGGKTGGTIMWGFAILV  322
            +    I  +  +L I +     D   +  + +      IF    G      ++    +  
Sbjct  231  IWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTA  290

Query  323  QFFTGCSAMLADTRMAYAFARDEALPFSSTIVSFLSEVNKYTHTPVNAVWFVVLFSIGLN  382
                  S++ + +RM Y+ ARD   P       FL +V+K    P+ A+   ++ S+   
Sbjct  291  ALSAANSSLYSGSRMLYSLARDGLAPK------FLKKVDKR-GVPLRAILVSMVISLLAL  343

Query  383  CIAIGSTQTATAIF-SITAPALDISYVSVILAH-------RLYKDKVKFVEGPFTLGKWG  434
             +A  +         +I+  +  I +  + L+H       +     +  +     LG  G
Sbjct  344  LLASLNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLG  403

Query  435  AAINWVSIVWVLFISTVLFFPPTVPVTASNMNYAICVGAFIAAF----ALFWWWAYA  487
              I  ++ + ++ I   L+    VP    N        A++        L     + 
Sbjct  404  -VILGLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILIGVKLHV  459



Lambda      K        H        a         alpha
   0.326    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00027038

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              156     5e-43
CDD:366028 pfam00324, AA_permease, Amino acid permease                73.5    2e-14


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 156 bits (396),  Expect = 5e-43, Method: Composition-based stats.
 Identities = 104/448 (23%), Positives = 189/448 (42%), Gaps = 32/448 (7%)

Query  29   STVSYAISILGILGSVPATFGAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTA  88
              +S    ++G +          +A+GGPA  VW W      ++ +G   AEL SA P +
Sbjct  2    GLLSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRS  61

Query  89   GGMYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSP  148
            GG+Y   ++          +++ GW N      G++S A   +  LL+  ++  +   + 
Sbjct  62   GGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLS--ALGPDLVPTT  115

Query  149  YKSLLL----------VSRRFKANAETLHRIVFWFAPINISATVCICLMLLYLTPDKQSA  198
            + +  +          ++ R    +  +  I+     + +   + I L L+       + 
Sbjct  116  WLTYGIAIAILIIFAIINIRGVRESAKIQNILGILK-LLLPLILIIILGLVTADGGGFNL  174

Query  199  RWVFTHFTDGSGWGSKLFSFLLGFISVAWTMTDYDGTTHMSEETHDAASLGPLAIQSAVL  258
                 H     GW         GF+ V W+ T ++   ++SEE        P AI   V+
Sbjct  175  LSGEWHTFFPDGWPG----VFAGFLGVLWSFTGFESAANVSEEVKKRNV--PKAIFIGVI  228

Query  259  VSGIMGWVLTISMCFCLTDLDSILRTPTGLPAAQIFLNAGGKTGGTIMWGFAILVQFFTG  318
            + G++  ++ I+    + D +  L +  G  AA +F   GGK G  I+     L      
Sbjct  229  IVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLLGAV  288

Query  319  CSAMLADTRMAYAFARDEALPFSSTIVSFLSEVNKYTHTPVNAVWFVVLFSIGLNCIAIG  378
             +A++  +R+ YA ARD  LPFS     F ++VNK+  +P+ A+    + S+ L  + + 
Sbjct  289  NTAIVGASRLLYALARDGVLPFS----RFFAKVNKF-GSPIRAIILTAILSLILLLLFLL  343

Query  379  STQTATAIFSITAPALDISYVSVILAHRLYKDKVKFVEGPFTLGKWGAAINWVSIVWVLF  438
            S     A+ S++A    +SY+  I+   + + K                +    I++ LF
Sbjct  344  SPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPD----LGRIPGRWPVAIFGILFSLF  399

Query  439  ISTVLFFPPTVPVTASNMNYAICVGAFI  466
            +   LFFPP  P T S++NYAI +    
Sbjct  400  LIVALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 73.5 bits (181),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 88/478 (18%), Positives = 169/478 (35%), Gaps = 50/478 (10%)

Query  35   ISILGILGSVPATF----GAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTAGG  90
            + ++ + G +        G+ L   GPA A+  + +   +   +  S+ E+ +  P +GG
Sbjct  2    VQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGG  61

Query  91   MYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSPYK  150
             Y      +     P   +  GW N       V ++  T + +L+    +  +  Y    
Sbjct  62   FYTYASRFLG----PSLGFATGW-NYWLSWITVLALELTAASILIQFWELVPDIPYLWVW  116

Query  151  SLL---------LVSRRFKANAETLHRIVFWFAPINISATVC-ICLMLLYLTPDKQSARW  200
              +         LV  ++   AE      FWFA I I A +  I + ++ L+    +   
Sbjct  117  GAVFLVLLTIINLVGVKWYGEAE------FWFALIKIIAIIGFIIVGIILLSGGNPNDGA  170

Query  201  VFTHFTDGSGWGSKLFSFLLGFISVAWT-MTDYDGT---THMSEETHDAASLGPLAIQSA  256
            +F +  D  G  +    F  GFISV       + G       + E  +     P AI   
Sbjct  171  IFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQV  230

Query  257  VLVSGI--MGWVLTISMCFCLTDLDSILRTPTGLPAAQIFL-NAGGKTGGTIMWGFAILV  313
            +    I  +  +L I +     D   +  + +      IF    G      ++    +  
Sbjct  231  IWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTA  290

Query  314  QFFTGCSAMLADTRMAYAFARDEALPFSSTIVSFLSEVNKYTHTPVNAVWFVVLFSIGLN  373
                  S++ + +RM Y+ ARD   P       FL +V+K    P+ A+   ++ S+   
Sbjct  291  ALSAANSSLYSGSRMLYSLARDGLAPK------FLKKVDKR-GVPLRAILVSMVISLLAL  343

Query  374  CIAIGSTQTATAIF-SITAPALDISYVSVILAH-------RLYKDKVKFVEGPFTLGKWG  425
             +A  +         +I+  +  I +  + L+H       +     +  +     LG  G
Sbjct  344  LLASLNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLG  403

Query  426  AAINWVSIVWVLFISTVLFFPPTVPVTASNMNYAICVGAFIAA--FALFWWWAYAHGK  481
              I  ++ + ++ I   L+    VP    N        A++    F +       H K
Sbjct  404  -VILGLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILIGVKLHVK  460



Lambda      K        H        a         alpha
   0.325    0.136    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00022267

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              120     4e-31
CDD:366028 pfam00324, AA_permease, Amino acid permease                64.3    7e-12


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 120 bits (302),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 133/325 (41%), Gaps = 16/325 (5%)

Query  29   STVSYAISILGILGSVPATFGAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTA  88
              +S    ++G +          +A+GGPA  VW W      ++ +G   AEL SA P +
Sbjct  2    GLLSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRS  61

Query  89   GGMYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSP  148
            GG+Y   ++          +++ GW N      G++S A   +  LL+           P
Sbjct  62   GGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLSALGP----DLVP  113

Query  149  TAMQTVALSIVILCVLGVICSLTTKTLHRIVFWFAPINISATVC--ICLMLLYLTPDKQS  206
            T   T  ++I IL +  +I     +   +I      + +   +   I L L+       +
Sbjct  114  TTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFN  173

Query  207  ARWVFTHFTDGSGWGSKLFSFLLGFISVAWTMTDYDGTTHMSEETHDAASLGPLAIQSAV  266
                  H     GW         GF+ V W+ T ++   ++SEE        P AI   V
Sbjct  174  LLSGEWHTFFPDGWPG----VFAGFLGVLWSFTGFESAANVSEEVKKRNV--PKAIFIGV  227

Query  267  LVSGIMGWVLTISMCFCLTDLDSILRTPTGLPAAQIFLNAGGKTGGTIMWGFAILVQFFT  326
            ++ G++  ++ I+    + D +  L +  G  AA +F   GGK G  I+     L     
Sbjct  228  IIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLLGA  287

Query  327  GCSAMLADTRMAYAFARDEALPFSS  351
              +A++  +R+ YA ARD  LPFS 
Sbjct  288  VNTAIVGASRLLYALARDGVLPFSR  312


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 64.3 bits (157),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 64/327 (20%), Positives = 118/327 (36%), Gaps = 23/327 (7%)

Query  35   ISILGILGSVPATF----GAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTAGG  90
            + ++ + G +        G+ L   GPA A+  + +   +   +  S+ E+ +  P +GG
Sbjct  2    VQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGG  61

Query  91   MYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSPTA  150
             Y      +     P   +  GW N       V ++  T + +L+    +  +  Y    
Sbjct  62   FYTYASRFLG----PSLGFATGW-NYWLSWITVLALELTAASILIQFWELVPDIPY----  112

Query  151  MQTVALSIVILCVLGVICSLTTKTLHRIVFWFAPINISATVC-ICLMLLYLTPDKQSARW  209
                    V L +L +I  +  K      FWFA I I A +  I + ++ L+    +   
Sbjct  113  --LWVWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGA  170

Query  210  VFTHFTDGSGWGSKLFSFLLGFISVAWT-MTDYDGT---THMSEETHDAASLGPLAIQSA  265
            +F +  D  G  +    F  GFISV       + G       + E  +     P AI   
Sbjct  171  IFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQV  230

Query  266  VLVSGI--MGWVLTISMCFCLTDLDSILRTPTGLPAAQIFL-NAGGKTGGTIMWGFAILV  322
            +    I  +  +L I +     D   +  + +      IF    G      ++    +  
Sbjct  231  IWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTA  290

Query  323  QFFTGCSAMLADTRMAYAFARDEALPF  349
                  S++ + +RM Y+ ARD   P 
Sbjct  291  ALSAANSSLYSGSRMLYSLARDGLAPK  317



Lambda      K        H        a         alpha
   0.325    0.135    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00022266

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              164     6e-46
CDD:366028 pfam00324, AA_permease, Amino acid permease                78.5    5e-16


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 164 bits (417),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 110/445 (25%), Positives = 189/445 (42%), Gaps = 21/445 (5%)

Query  29   STVSYAISILGILGSVPATFGAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTA  88
              +S    ++G +          +A+GGPA  VW W      ++ +G   AEL SA P +
Sbjct  2    GLLSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRS  61

Query  89   GGMYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSP  148
            GG+Y   ++          +++ GW N      G++S A   +  LL+           P
Sbjct  62   GGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLSALGP----DLVP  113

Query  149  TAMQTVALSIVILCVLGVICSLTTKTLHRIVFWFAPINISATVC--ICLMLLYLTPDKQS  206
            T   T  ++I IL +  +I     +   +I      + +   +   I L L+       +
Sbjct  114  TTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFN  173

Query  207  ARWVFTHFTDGSGWGSKLFSFLLGFISVAWTMTDYDGTTHMSEETHDAASLGPLAIQSAV  266
                  H     GW         GF+ V W+ T ++   ++SEE        P AI   V
Sbjct  174  LLSGEWHTFFPDGWPG----VFAGFLGVLWSFTGFESAANVSEEVKKRNV--PKAIFIGV  227

Query  267  LVSGIMGWVLTISMCFCLTDLDSILRTPTGLPAAQIFLNAGGKTGGTIMWGFAILVQFFT  326
            ++ G++  ++ I+    + D +  L +  G  AA +F   GGK G  I+     L     
Sbjct  228  IIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLLGA  287

Query  327  GCSAMLADTRMAYAFARDEALPFSSFLSEVNKYTHTPVNAVWFVVLFSIGLNCIAIGSTQ  386
              +A++  +R+ YA ARD  LPFS F ++VNK+  +P+ A+    + S+ L  + + S  
Sbjct  288  VNTAIVGASRLLYALARDGVLPFSRFFAKVNKF-GSPIRAIILTAILSLILLLLFLLSPA  346

Query  387  TATAIFSITAPALDISYVSVILAHRLYKDKVKFVEGPFTLGKWGAAINWVSIVWVLFIST  446
               A+ S++A    +SY+  I+   + + K                +    I++ LF+  
Sbjct  347  AYNALLSLSAYGYLLSYLLPIIGLLILRKKRPD----LGRIPGRWPVAIFGILFSLFLIV  402

Query  447  VLFFPPTVPVTASNMNYAICVGAFI  471
             LFFPP  P T S++NYAI +    
Sbjct  403  ALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 78.5 bits (194),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 87/473 (18%), Positives = 168/473 (36%), Gaps = 39/473 (8%)

Query  35   ISILGILGSVPATF----GAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTAGG  90
            + ++ + G +        G+ L   GPA A+  + +   +   +  S+ E+ +  P +GG
Sbjct  2    VQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGG  61

Query  91   MYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSPTA  150
             Y      +     P   +  GW N       V ++  T + +L+    +  +  Y    
Sbjct  62   FYTYASRFLG----PSLGFATGW-NYWLSWITVLALELTAASILIQFWELVPDIPY----  112

Query  151  MQTVALSIVILCVLGVICSLTTKTLHRIVFWFAPINISATVC-ICLMLLYLTPDKQSARW  209
                    V L +L +I  +  K      FWFA I I A +  I + ++ L+    +   
Sbjct  113  --LWVWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGA  170

Query  210  VFTHFTDGSGWGSKLFSFLLGFISVAWT-MTDYDGT---THMSEETHDAASLGPLAIQSA  265
            +F +  D  G  +    F  GFISV       + G       + E  +     P AI   
Sbjct  171  IFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQV  230

Query  266  VLVSGI--MGWVLTISMCFCLTDLDSILRTPTGLPAAQIFL-NAGGKTGGTIMWGFAILV  322
            +    I  +  +L I +     D   +  + +      IF    G      ++    +  
Sbjct  231  IWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTA  290

Query  323  QFFTGCSAMLADTRMAYAFARDEALPFSSFLSEVNKYTHTPVNAVWFVVLFSIGLNCIAI  382
                  S++ + +RM Y+ ARD   P   FL +V+K    P+ A+   ++ S+    +A 
Sbjct  291  ALSAANSSLYSGSRMLYSLARDGLAPK--FLKKVDKR-GVPLRAILVSMVISLLALLLAS  347

Query  383  GSTQTATAIF-SITAPALDISYVSVILAH-------RLYKDKVKFVEGPFTLGKWGAAIN  434
             +         +I+  +  I +  + L+H       +     +  +     LG  G  I 
Sbjct  348  LNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLG-VIL  406

Query  435  WVSIVWVLFISTVLFFPPTVPVTASNMNYAICVGAFIAAF----ALFWWWAYA  483
             ++ + ++ I   L+    VP    N        A++        L     + 
Sbjct  407  GLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILIGVKLHV  459



Lambda      K        H        a         alpha
   0.326    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 649534314


Query= TCONS_00022264

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              164     6e-46
CDD:366028 pfam00324, AA_permease, Amino acid permease                78.5    5e-16


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 164 bits (417),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 110/445 (25%), Positives = 189/445 (42%), Gaps = 21/445 (5%)

Query  29   STVSYAISILGILGSVPATFGAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTA  88
              +S    ++G +          +A+GGPA  VW W      ++ +G   AEL SA P +
Sbjct  2    GLLSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRS  61

Query  89   GGMYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSP  148
            GG+Y   ++          +++ GW N      G++S A   +  LL+           P
Sbjct  62   GGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLSALGP----DLVP  113

Query  149  TAMQTVALSIVILCVLGVICSLTTKTLHRIVFWFAPINISATVC--ICLMLLYLTPDKQS  206
            T   T  ++I IL +  +I     +   +I      + +   +   I L L+       +
Sbjct  114  TTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFN  173

Query  207  ARWVFTHFTDGSGWGSKLFSFLLGFISVAWTMTDYDGTTHMSEETHDAASLGPLAIQSAV  266
                  H     GW         GF+ V W+ T ++   ++SEE        P AI   V
Sbjct  174  LLSGEWHTFFPDGWPG----VFAGFLGVLWSFTGFESAANVSEEVKKRNV--PKAIFIGV  227

Query  267  LVSGIMGWVLTISMCFCLTDLDSILRTPTGLPAAQIFLNAGGKTGGTIMWGFAILVQFFT  326
            ++ G++  ++ I+    + D +  L +  G  AA +F   GGK G  I+     L     
Sbjct  228  IIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLLGA  287

Query  327  GCSAMLADTRMAYAFARDEALPFSSFLSEVNKYTHTPVNAVWFVVLFSIGLNCIAIGSTQ  386
              +A++  +R+ YA ARD  LPFS F ++VNK+  +P+ A+    + S+ L  + + S  
Sbjct  288  VNTAIVGASRLLYALARDGVLPFSRFFAKVNKF-GSPIRAIILTAILSLILLLLFLLSPA  346

Query  387  TATAIFSITAPALDISYVSVILAHRLYKDKVKFVEGPFTLGKWGAAINWVSIVWVLFIST  446
               A+ S++A    +SY+  I+   + + K                +    I++ LF+  
Sbjct  347  AYNALLSLSAYGYLLSYLLPIIGLLILRKKRPD----LGRIPGRWPVAIFGILFSLFLIV  402

Query  447  VLFFPPTVPVTASNMNYAICVGAFI  471
             LFFPP  P T S++NYAI +    
Sbjct  403  ALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 78.5 bits (194),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 87/473 (18%), Positives = 168/473 (36%), Gaps = 39/473 (8%)

Query  35   ISILGILGSVPATF----GAPLAAGGPATAVWCWFLGSCMAMCIGSSVAELVSAYPTAGG  90
            + ++ + G +        G+ L   GPA A+  + +   +   +  S+ E+ +  P +GG
Sbjct  2    VQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGG  61

Query  91   MYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTVSQMLLACASMNSEYSYSPTA  150
             Y      +     P   +  GW N       V ++  T + +L+    +  +  Y    
Sbjct  62   FYTYASRFLG----PSLGFATGW-NYWLSWITVLALELTAASILIQFWELVPDIPY----  112

Query  151  MQTVALSIVILCVLGVICSLTTKTLHRIVFWFAPINISATVC-ICLMLLYLTPDKQSARW  209
                    V L +L +I  +  K      FWFA I I A +  I + ++ L+    +   
Sbjct  113  --LWVWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGA  170

Query  210  VFTHFTDGSGWGSKLFSFLLGFISVAWT-MTDYDGT---THMSEETHDAASLGPLAIQSA  265
            +F +  D  G  +    F  GFISV       + G       + E  +     P AI   
Sbjct  171  IFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQV  230

Query  266  VLVSGI--MGWVLTISMCFCLTDLDSILRTPTGLPAAQIFL-NAGGKTGGTIMWGFAILV  322
            +    I  +  +L I +     D   +  + +      IF    G      ++    +  
Sbjct  231  IWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTA  290

Query  323  QFFTGCSAMLADTRMAYAFARDEALPFSSFLSEVNKYTHTPVNAVWFVVLFSIGLNCIAI  382
                  S++ + +RM Y+ ARD   P   FL +V+K    P+ A+   ++ S+    +A 
Sbjct  291  ALSAANSSLYSGSRMLYSLARDGLAPK--FLKKVDKR-GVPLRAILVSMVISLLALLLAS  347

Query  383  GSTQTATAIF-SITAPALDISYVSVILAH-------RLYKDKVKFVEGPFTLGKWGAAIN  434
             +         +I+  +  I +  + L+H       +     +  +     LG  G  I 
Sbjct  348  LNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLG-VIL  406

Query  435  WVSIVWVLFISTVLFFPPTVPVTASNMNYAICVGAFIAAF----ALFWWWAYA  483
             ++ + ++ I   L+    VP    N        A++        L     + 
Sbjct  407  GLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILIGVKLHV  459



Lambda      K        H        a         alpha
   0.326    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 649534314


Query= TCONS_00027040

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              97.4    1e-23


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 97.4 bits (243),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 117/283 (41%), Gaps = 16/283 (6%)

Query  2    AMCIGSSVAELVSAYPTAGGMYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTV  61
            ++ +G   AEL SA P +GG+Y   ++          +++ GW N      G++S A   
Sbjct  44   SLAVGLVYAELSSALPRSGGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVA  99

Query  62   SQMLLACASMNSEYSYSPTAMQTVALSIVILCVLGVICSLTTKTLHRIVFWFAPINISAT  121
            +  LL+           PT   T  ++I IL +  +I     +   +I      + +   
Sbjct  100  ASYLLSALGP----DLVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLP  155

Query  122  VC--ICLMLLYLTPDKQSARWVFTHFTDGSGWGSKLFSFLLGFISVAWTMTDYDGTTHMS  179
            +   I L L+       +      H     GW         GF+ V W+ T ++   ++S
Sbjct  156  LILIIILGLVTADGGGFNLLSGEWHTFFPDGWPG----VFAGFLGVLWSFTGFESAANVS  211

Query  180  EETHDAASLGPLAIQSAVLVSGIMGWVLTISMCFCLTDLDSILRTPTGLPAAQIFLNAGG  239
            EE        P AI   V++ G++  ++ I+    + D +  L +  G  AA +F   GG
Sbjct  212  EEVKKRNV--PKAIFIGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGG  269

Query  240  KTGGTIMWGFAILVQFFTGCSAMLADTRMAYAFARDEALPFSS  282
            K G  I+     L       +A++  +R+ YA ARD  LPFS 
Sbjct  270  KWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSR  312



Lambda      K        H        a         alpha
   0.326    0.135    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0809    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00022269

Length=430
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              122     2e-31


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 122 bits (308),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 92/403 (23%), Positives = 165/403 (41%), Gaps = 42/403 (10%)

Query  2    AMCIGSSVAELVSAYPTAGGMYFVTKHVVPNDQVPIFSWVQGWCNLLGQTAGVSSVAYTV  61
            ++ +G   AEL SA P +GG+Y   ++          +++ GW N      G++S A   
Sbjct  44   SLAVGLVYAELSSALPRSGGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVA  99

Query  62   SQMLLACASMNSEYSYSPYKSL---------LLVSRRFKANAETLHR-------------  99
            +  LL+    +   +      +         ++  R  + +A+  +              
Sbjct  100  ASYLLSALGPDLVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILI  159

Query  100  -IVFWFAPINNKQSARWVFTHFTDGSGWGSKLFSFLLGFISVAWTMTDYDGTTHMSEETH  158
             I+          +      H     GW         GF+ V W+ T ++   ++SEE  
Sbjct  160  IILGLVTADGGGFNLLSGEWHTFFPDGWPG----VFAGFLGVLWSFTGFESAANVSEEVK  215

Query  159  DAASLGPLAIQSAVLVSGIMGWVLTISMCFCLTDLDSILRTPTGLPAAQIFLNAGGKTGG  218
                  P AI   V++ G++  ++ I+    + D +  L +  G  AA +F   GGK G 
Sbjct  216  KRNV--PKAIFIGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGA  273

Query  219  TIMWGFAILVQFFTGCSAMLADTRMAYAFARDEALPFSSTIVSFLSEVNKYTHTPVNAVW  278
             I+     L       +A++  +R+ YA ARD  LPFS     F ++VNK+  +P+ A+ 
Sbjct  274  IIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFS----RFFAKVNKF-GSPIRAII  328

Query  279  FVVLFSIGLNCIAIGSTQTATAIFSITAPALDISYVSVILAHRLYKDKVKFVEGPFTLGK  338
               + S+ L  + + S     A+ S++A    +SY+  I+   + + K            
Sbjct  329  LTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPD----LGRIP  384

Query  339  WGAAINWVSIVWVLFISTVLFFPPTVPVTASNMNYAICVGAFI  381
                +    I++ LF+   LFFPP  P T S++NYAI +    
Sbjct  385  GRWPVAIFGILFSLFLIVALFFPPVGPATGSSLNYAIILIVAF  427



Lambda      K        H        a         alpha
   0.325    0.135    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521459360


Query= TCONS_00027041

Length=374


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00022270

Length=922


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1187170078


Query= TCONS_00022271

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462544 pfam08640, U3_assoc_6, U3 small nucleolar RNA-associat...  123     3e-35


>CDD:462544 pfam08640, U3_assoc_6, U3 small nucleolar RNA-associated protein 
6.  This is a family of U3 nucleolar RNA-associated proteins 
which are involved in nucleolar processing of pre-18S ribosomal 
RNA.
Length=86

 Score = 123 bits (310),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 41/86 (48%), Positives = 60/86 (70%), Gaps = 0/86 (0%)

Query  12  LEQSVPELKEFEKKKIFSKDEILSIVKRRSDFEHKLNARGAQPSDFVRYAEYEMNLDALR  71
           LE+ +PEL++ E+K +F+KDEI  IVK+R+DFE++L  RG    DF+RY +YE+NL+ LR
Sbjct  1   LERMLPELEDLERKGLFTKDEIREIVKKRTDFEYRLQRRGKSKEDFLRYIQYEINLEKLR  60

Query  72  RKRVKRLGIRSGGHSGQRRIFFILDR  97
           RKR KRL +    +S     + I+ R
Sbjct  61  RKRRKRLKLSKKKNSVSDIEYSIVRR  86



Lambda      K        H        a         alpha
   0.320    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00022272

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462544 pfam08640, U3_assoc_6, U3 small nucleolar RNA-associat...  123     3e-35


>CDD:462544 pfam08640, U3_assoc_6, U3 small nucleolar RNA-associated protein 
6.  This is a family of U3 nucleolar RNA-associated proteins 
which are involved in nucleolar processing of pre-18S ribosomal 
RNA.
Length=86

 Score = 123 bits (310),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 41/86 (48%), Positives = 60/86 (70%), Gaps = 0/86 (0%)

Query  12  LEQSVPELKEFEKKKIFSKDEILSIVKRRSDFEHKLNARGAQPSDFVRYAEYEMNLDALR  71
           LE+ +PEL++ E+K +F+KDEI  IVK+R+DFE++L  RG    DF+RY +YE+NL+ LR
Sbjct  1   LERMLPELEDLERKGLFTKDEIREIVKKRTDFEYRLQRRGKSKEDFLRYIQYEINLEKLR  60

Query  72  RKRVKRLGIRSGGHSGQRRIFFILDR  97
           RKR KRL +    +S     + I+ R
Sbjct  61  RKRRKRLKLSKKKNSVSDIEYSIVRR  86



Lambda      K        H        a         alpha
   0.320    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00027042

Length=922


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1187170078


Query= TCONS_00022273

Length=615


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 781585844


Query= TCONS_00022274

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462544 pfam08640, U3_assoc_6, U3 small nucleolar RNA-associat...  123     3e-35


>CDD:462544 pfam08640, U3_assoc_6, U3 small nucleolar RNA-associated protein 
6.  This is a family of U3 nucleolar RNA-associated proteins 
which are involved in nucleolar processing of pre-18S ribosomal 
RNA.
Length=86

 Score = 123 bits (310),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 41/86 (48%), Positives = 60/86 (70%), Gaps = 0/86 (0%)

Query  12  LEQSVPELKEFEKKKIFSKDEILSIVKRRSDFEHKLNARGAQPSDFVRYAEYEMNLDALR  71
           LE+ +PEL++ E+K +F+KDEI  IVK+R+DFE++L  RG    DF+RY +YE+NL+ LR
Sbjct  1   LERMLPELEDLERKGLFTKDEIREIVKKRTDFEYRLQRRGKSKEDFLRYIQYEINLEKLR  60

Query  72  RKRVKRLGIRSGGHSGQRRIFFILDR  97
           RKR KRL +    +S     + I+ R
Sbjct  61  RKRRKRLKLSKKKNSVSDIEYSIVRR  86



Lambda      K        H        a         alpha
   0.320    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00027043

Length=648


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 818508450


Query= TCONS_00027044

Length=922


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1187170078


Query= TCONS_00027045

Length=858


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1095297182


Query= TCONS_00027046

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459862 pfam00596, Aldolase_II, Class II Aldolase and Adducin ...  183     1e-58


>CDD:459862 pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal 
domain.  This family includes class II aldolases and adducins 
which have not been ascribed any enzymatic function.
Length=178

 Score = 183 bits (467),  Expect = 1e-58, Method: Composition-based stats.
 Identities = 70/186 (38%), Positives = 100/186 (54%), Gaps = 10/186 (5%)

Query  62   EHMAAAFRFFGKQGYGEGVSGHISMRDPVLKDHFWMNPFAKHFSTIKASDLVLVDSEGYV  121
            E +AAA R   ++G  EG  G+IS+R P   D F + P    F  +   DLV+VD +G V
Sbjct  1    EELAAAGRLLARRGLVEGTGGNISVRLP--GDGFLITPSGVDFGELTPEDLVVVDLDGNV  58

Query  122  TEGGAQLPINEAGFMIHSEIHKARPDVVAAAHTHSIHGKTWSAFGRPVEMLTQDACNFYG  181
             EGG  L  + +   +H  I++ARPD  A  HTHS +    S     +  +TQ+A +F G
Sbjct  59   VEGG--LKPS-SETPLHLAIYRARPDAGAVVHTHSPYATALSLAKEGLPPITQEAADFLG  115

Query  182  K-LSVYDDHG-GIALAREEGEQIAKALGEKNIACILQNHGLLTVGHTVDEAAFLFFSLDN  239
              + +   +  G     E GE+IA+ALG    A +L+NHGLL  G T++EA +L   L+ 
Sbjct  116  GDIPIIPYYTPGTE---ELGERIAEALGGDRKAVLLRNHGLLVWGKTLEEAFYLAEELER  172

Query  240  ACRSQL  245
            A   QL
Sbjct  173  AAEIQL  178



Lambda      K        H        a         alpha
   0.319    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00027047

Length=124
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459862 pfam00596, Aldolase_II, Class II Aldolase and Adducin ...  83.0    1e-21


>CDD:459862 pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal 
domain.  This family includes class II aldolases and adducins 
which have not been ascribed any enzymatic function.
Length=178

 Score = 83.0 bits (206),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 27/85 (32%), Positives = 39/85 (46%), Gaps = 3/85 (4%)

Query  1    MNPFAKHFSTIKASDLVLVDSEGYVTEGGAQLPINEAGFMIHSEIHKARPDVVAAAHTHS  60
            + P    F  +   DLV+VD +G V EGG  L  + +   +H  I++ARPD  A  HTHS
Sbjct  34   ITPSGVDFGELTPEDLVVVDLDGNVVEGG--LKPS-SETPLHLAIYRARPDAGAVVHTHS  90

Query  61   IHGKTWSAFGRPVEMLTQGLCYRYT  85
             +    S     +  +TQ       
Sbjct  91   PYATALSLAKEGLPPITQEAADFLG  115



Lambda      K        H        a         alpha
   0.320    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00027048

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459862 pfam00596, Aldolase_II, Class II Aldolase and Adducin ...  145     2e-44


>CDD:459862 pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal 
domain.  This family includes class II aldolases and adducins 
which have not been ascribed any enzymatic function.
Length=178

 Score = 145 bits (368),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 58/178 (33%), Positives = 81/178 (46%), Gaps = 26/178 (15%)

Query  62   EHMAAAFRFFGKQGYGEGVSGHISMRDPVLKDHFWMNPFAKHFSTIKASDLVLVDSEGYV  121
            E +AAA R   ++G  EG  G+IS+R P   D F + P    F  +   DLV+VD +G V
Sbjct  1    EELAAAGRLLARRGLVEGTGGNISVRLP--GDGFLITPSGVDFGELTPEDLVVVDLDGNV  58

Query  122  TEGGAQLPINEAGFMIHSEIHKARPDVVAAAHTHSIHGKTWSAFGRPVEMLTQGLCYRYT  181
             EGG  L  + +   +H  I++ARPD  A  HTHS +    S     +  +TQ       
Sbjct  59   VEGG--LKPS-SETPLHLAIYRARPDAGAVVHTHSPYATALSLAKEGLPPITQEAADFL-  114

Query  182  MKGCGWRTLTLPVDACNFYGKLSVYDDHGGIALAREEGEQIAKALGEKNIACILQNHG  239
                      +P+           Y   G   L    GE+IA+ALG    A +L+NHG
Sbjct  115  -------GGDIPIIP---------YYTPGTEEL----GERIAEALGGDRKAVLLRNHG  152



Lambda      K        H        a         alpha
   0.319    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00027049

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459862 pfam00596, Aldolase_II, Class II Aldolase and Adducin ...  174     1e-54


>CDD:459862 pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal 
domain.  This family includes class II aldolases and adducins 
which have not been ascribed any enzymatic function.
Length=178

 Score = 174 bits (443),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 69/204 (34%), Positives = 96/204 (47%), Gaps = 26/204 (13%)

Query  62   EHMAAAFRFFGKQGYGEGVSGHISMRDPVLKDHFWMNPFAKHFSTIKASDLVLVDSEGYV  121
            E +AAA R   ++G  EG  G+IS+R P   D F + P    F  +   DLV+VD +G V
Sbjct  1    EELAAAGRLLARRGLVEGTGGNISVRLP--GDGFLITPSGVDFGELTPEDLVVVDLDGNV  58

Query  122  TEGGAQLPINEAGFMIHSEIHKARPDVVAAAHTHSIHGKTWSAFGRPVEMLTQGLCYRYT  181
             EGG  L  + +   +H  I++ARPD  A  HTHS +    S     +  +TQ       
Sbjct  59   VEGG--LKPS-SETPLHLAIYRARPDAGAVVHTHSPYATALSLAKEGLPPITQEAADFLG  115

Query  182  MKGCGWRTLTLPVDACNFYGKLSVYDDHGGIALAREEGEQIAKALGEKNIACILQNHGLL  241
                      +P+           Y   G   L    GE+IA+ALG    A +L+NHGLL
Sbjct  116  --------GDIPIIP---------YYTPGTEEL----GERIAEALGGDRKAVLLRNHGLL  154

Query  242  TVGHTVDEAAFLFFSLDNACRSQL  265
              G T++EA +L   L+ A   QL
Sbjct  155  VWGKTLEEAFYLAEELERAAEIQL  178



Lambda      K        H        a         alpha
   0.319    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00022278

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:192566 pfam10392, COG5, Golgi transport complex subunit 5. Th...  148     7e-44


>CDD:192566 pfam10392, COG5, Golgi transport complex subunit 5.  The COG 
complex, the peripheral membrane oligomeric protein complex 
involved in intra-Golgi protein trafficking, consists of eight 
subunits arranged in two lobes bridged by Cog1. Cog5 is in 
the smaller, B lobe, bound in with Cog6-8, and is itself bound 
to Cog1 as well as, strongly, to Cog7.
Length=132

 Score = 148 bits (377),  Expect = 7e-44, Method: Composition-based stats.
 Identities = 61/133 (46%), Positives = 83/133 (62%), Gaps = 1/133 (1%)

Query  12   EAFLDPDFSSASFANSLVLATNNATDTPLDLSTPLSRVLFDLQEIDTHIHNLTSKSAIPL  71
            EAFLDPDF   SFAN+L+LATNN  DTPLDLSTPL R+ +D+QE+D  I  L + + + L
Sbjct  1    EAFLDPDFDPKSFANALLLATNNNDDTPLDLSTPLKRLNYDIQELDRRIRTLITSNHLEL  60

Query  72   LTHTRDQTVAAERILKETEEQLSSVTKGYERLEQEVLRKWEAADEARVAAEKSLATVRLA  131
            L+H      +A  IL   +  L  ++  YERL+ +VL  +E A + + A ++   T  L 
Sbjct  61   LSHLSSIK-SASSILSTLKSSLEYLSASYERLKSDVLEPYERALKLQSALKRLHQTTDLL  119

Query  132  RAVARCLALGRQL  144
            RA+ R L L RQL
Sbjct  120  RALLRFLHLSRQL  132



Lambda      K        H        a         alpha
   0.315    0.128    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00022280

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:192566 pfam10392, COG5, Golgi transport complex subunit 5. Th...  148     7e-44


>CDD:192566 pfam10392, COG5, Golgi transport complex subunit 5.  The COG 
complex, the peripheral membrane oligomeric protein complex 
involved in intra-Golgi protein trafficking, consists of eight 
subunits arranged in two lobes bridged by Cog1. Cog5 is in 
the smaller, B lobe, bound in with Cog6-8, and is itself bound 
to Cog1 as well as, strongly, to Cog7.
Length=132

 Score = 148 bits (377),  Expect = 7e-44, Method: Composition-based stats.
 Identities = 61/133 (46%), Positives = 83/133 (62%), Gaps = 1/133 (1%)

Query  12   EAFLDPDFSSASFANSLVLATNNATDTPLDLSTPLSRVLFDLQEIDTHIHNLTSKSAIPL  71
            EAFLDPDF   SFAN+L+LATNN  DTPLDLSTPL R+ +D+QE+D  I  L + + + L
Sbjct  1    EAFLDPDFDPKSFANALLLATNNNDDTPLDLSTPLKRLNYDIQELDRRIRTLITSNHLEL  60

Query  72   LTHTRDQTVAAERILKETEEQLSSVTKGYERLEQEVLRKWEAADEARVAAEKSLATVRLA  131
            L+H      +A  IL   +  L  ++  YERL+ +VL  +E A + + A ++   T  L 
Sbjct  61   LSHLSSIK-SASSILSTLKSSLEYLSASYERLKSDVLEPYERALKLQSALKRLHQTTDLL  119

Query  132  RAVARCLALGRQL  144
            RA+ R L L RQL
Sbjct  120  RALLRFLHLSRQL  132



Lambda      K        H        a         alpha
   0.315    0.128    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00027050

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:192566 pfam10392, COG5, Golgi transport complex subunit 5. Th...  148     7e-44


>CDD:192566 pfam10392, COG5, Golgi transport complex subunit 5.  The COG 
complex, the peripheral membrane oligomeric protein complex 
involved in intra-Golgi protein trafficking, consists of eight 
subunits arranged in two lobes bridged by Cog1. Cog5 is in 
the smaller, B lobe, bound in with Cog6-8, and is itself bound 
to Cog1 as well as, strongly, to Cog7.
Length=132

 Score = 148 bits (377),  Expect = 7e-44, Method: Composition-based stats.
 Identities = 61/133 (46%), Positives = 83/133 (62%), Gaps = 1/133 (1%)

Query  12   EAFLDPDFSSASFANSLVLATNNATDTPLDLSTPLSRVLFDLQEIDTHIHNLTSKSAIPL  71
            EAFLDPDF   SFAN+L+LATNN  DTPLDLSTPL R+ +D+QE+D  I  L + + + L
Sbjct  1    EAFLDPDFDPKSFANALLLATNNNDDTPLDLSTPLKRLNYDIQELDRRIRTLITSNHLEL  60

Query  72   LTHTRDQTVAAERILKETEEQLSSVTKGYERLEQEVLRKWEAADEARVAAEKSLATVRLA  131
            L+H      +A  IL   +  L  ++  YERL+ +VL  +E A + + A ++   T  L 
Sbjct  61   LSHLSSIK-SASSILSTLKSSLEYLSASYERLKSDVLEPYERALKLQSALKRLHQTTDLL  119

Query  132  RAVARCLALGRQL  144
            RA+ R L L RQL
Sbjct  120  RALLRFLHLSRQL  132



Lambda      K        H        a         alpha
   0.315    0.128    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00022277

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:192566 pfam10392, COG5, Golgi transport complex subunit 5. Th...  148     7e-44


>CDD:192566 pfam10392, COG5, Golgi transport complex subunit 5.  The COG 
complex, the peripheral membrane oligomeric protein complex 
involved in intra-Golgi protein trafficking, consists of eight 
subunits arranged in two lobes bridged by Cog1. Cog5 is in 
the smaller, B lobe, bound in with Cog6-8, and is itself bound 
to Cog1 as well as, strongly, to Cog7.
Length=132

 Score = 148 bits (377),  Expect = 7e-44, Method: Composition-based stats.
 Identities = 61/133 (46%), Positives = 83/133 (62%), Gaps = 1/133 (1%)

Query  12   EAFLDPDFSSASFANSLVLATNNATDTPLDLSTPLSRVLFDLQEIDTHIHNLTSKSAIPL  71
            EAFLDPDF   SFAN+L+LATNN  DTPLDLSTPL R+ +D+QE+D  I  L + + + L
Sbjct  1    EAFLDPDFDPKSFANALLLATNNNDDTPLDLSTPLKRLNYDIQELDRRIRTLITSNHLEL  60

Query  72   LTHTRDQTVAAERILKETEEQLSSVTKGYERLEQEVLRKWEAADEARVAAEKSLATVRLA  131
            L+H      +A  IL   +  L  ++  YERL+ +VL  +E A + + A ++   T  L 
Sbjct  61   LSHLSSIK-SASSILSTLKSSLEYLSASYERLKSDVLEPYERALKLQSALKRLHQTTDLL  119

Query  132  RAVARCLALGRQL  144
            RA+ R L L RQL
Sbjct  120  RALLRFLHLSRQL  132



Lambda      K        H        a         alpha
   0.315    0.128    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00027051

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:192566 pfam10392, COG5, Golgi transport complex subunit 5. Th...  148     7e-44


>CDD:192566 pfam10392, COG5, Golgi transport complex subunit 5.  The COG 
complex, the peripheral membrane oligomeric protein complex 
involved in intra-Golgi protein trafficking, consists of eight 
subunits arranged in two lobes bridged by Cog1. Cog5 is in 
the smaller, B lobe, bound in with Cog6-8, and is itself bound 
to Cog1 as well as, strongly, to Cog7.
Length=132

 Score = 148 bits (377),  Expect = 7e-44, Method: Composition-based stats.
 Identities = 61/133 (46%), Positives = 83/133 (62%), Gaps = 1/133 (1%)

Query  12   EAFLDPDFSSASFANSLVLATNNATDTPLDLSTPLSRVLFDLQEIDTHIHNLTSKSAIPL  71
            EAFLDPDF   SFAN+L+LATNN  DTPLDLSTPL R+ +D+QE+D  I  L + + + L
Sbjct  1    EAFLDPDFDPKSFANALLLATNNNDDTPLDLSTPLKRLNYDIQELDRRIRTLITSNHLEL  60

Query  72   LTHTRDQTVAAERILKETEEQLSSVTKGYERLEQEVLRKWEAADEARVAAEKSLATVRLA  131
            L+H      +A  IL   +  L  ++  YERL+ +VL  +E A + + A ++   T  L 
Sbjct  61   LSHLSSIK-SASSILSTLKSSLEYLSASYERLKSDVLEPYERALKLQSALKRLHQTTDLL  119

Query  132  RAVARCLALGRQL  144
            RA+ R L L RQL
Sbjct  120  RALLRFLHLSRQL  132



Lambda      K        H        a         alpha
   0.315    0.128    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00027052

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:192566 pfam10392, COG5, Golgi transport complex subunit 5. Th...  148     7e-44


>CDD:192566 pfam10392, COG5, Golgi transport complex subunit 5.  The COG 
complex, the peripheral membrane oligomeric protein complex 
involved in intra-Golgi protein trafficking, consists of eight 
subunits arranged in two lobes bridged by Cog1. Cog5 is in 
the smaller, B lobe, bound in with Cog6-8, and is itself bound 
to Cog1 as well as, strongly, to Cog7.
Length=132

 Score = 148 bits (377),  Expect = 7e-44, Method: Composition-based stats.
 Identities = 61/133 (46%), Positives = 83/133 (62%), Gaps = 1/133 (1%)

Query  12   EAFLDPDFSSASFANSLVLATNNATDTPLDLSTPLSRVLFDLQEIDTHIHNLTSKSAIPL  71
            EAFLDPDF   SFAN+L+LATNN  DTPLDLSTPL R+ +D+QE+D  I  L + + + L
Sbjct  1    EAFLDPDFDPKSFANALLLATNNNDDTPLDLSTPLKRLNYDIQELDRRIRTLITSNHLEL  60

Query  72   LTHTRDQTVAAERILKETEEQLSSVTKGYERLEQEVLRKWEAADEARVAAEKSLATVRLA  131
            L+H      +A  IL   +  L  ++  YERL+ +VL  +E A + + A ++   T  L 
Sbjct  61   LSHLSSIK-SASSILSTLKSSLEYLSASYERLKSDVLEPYERALKLQSALKRLHQTTDLL  119

Query  132  RAVARCLALGRQL  144
            RA+ R L L RQL
Sbjct  120  RALLRFLHLSRQL  132



Lambda      K        H        a         alpha
   0.315    0.128    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00022279

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:192566 pfam10392, COG5, Golgi transport complex subunit 5. Th...  148     7e-44


>CDD:192566 pfam10392, COG5, Golgi transport complex subunit 5.  The COG 
complex, the peripheral membrane oligomeric protein complex 
involved in intra-Golgi protein trafficking, consists of eight 
subunits arranged in two lobes bridged by Cog1. Cog5 is in 
the smaller, B lobe, bound in with Cog6-8, and is itself bound 
to Cog1 as well as, strongly, to Cog7.
Length=132

 Score = 148 bits (377),  Expect = 7e-44, Method: Composition-based stats.
 Identities = 61/133 (46%), Positives = 83/133 (62%), Gaps = 1/133 (1%)

Query  12   EAFLDPDFSSASFANSLVLATNNATDTPLDLSTPLSRVLFDLQEIDTHIHNLTSKSAIPL  71
            EAFLDPDF   SFAN+L+LATNN  DTPLDLSTPL R+ +D+QE+D  I  L + + + L
Sbjct  1    EAFLDPDFDPKSFANALLLATNNNDDTPLDLSTPLKRLNYDIQELDRRIRTLITSNHLEL  60

Query  72   LTHTRDQTVAAERILKETEEQLSSVTKGYERLEQEVLRKWEAADEARVAAEKSLATVRLA  131
            L+H      +A  IL   +  L  ++  YERL+ +VL  +E A + + A ++   T  L 
Sbjct  61   LSHLSSIK-SASSILSTLKSSLEYLSASYERLKSDVLEPYERALKLQSALKRLHQTTDLL  119

Query  132  RAVARCLALGRQL  144
            RA+ R L L RQL
Sbjct  120  RALLRFLHLSRQL  132



Lambda      K        H        a         alpha
   0.315    0.128    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00022281

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00027053

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00027054

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00022282

Length=679


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 864226940


Query= TCONS_00022284

Length=637


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 802285760


Query= TCONS_00022283

Length=637


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 802285760


Query= TCONS_00022286

Length=679


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 864226940


Query= TCONS_00022285

Length=679


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 864226940


Query= TCONS_00022289

Length=637


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 802285760


Query= TCONS_00022288

Length=637


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 802285760


Query= TCONS_00022287

Length=637


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 802285760


Query= TCONS_00022290

Length=679


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 864226940


Query= TCONS_00027055

Length=679


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 864226940


Query= TCONS_00027056

Length=679


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 864226940


Query= TCONS_00027058

Length=679


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 864226940


Query= TCONS_00027057

Length=679


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 864226940


Query= TCONS_00027059

Length=637


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0791    0.140     1.90     42.6     43.6 

Effective search space used: 802285760


Query= TCONS_00022293

Length=637


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 802285760


Query= TCONS_00022292

Length=637


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 802285760


Query= TCONS_00022291

Length=637


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 802285760


Query= TCONS_00022294

Length=679


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 864226940


Query= TCONS_00022295

Length=679


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 864226940


Query= TCONS_00022296

Length=679


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 864226940


Query= TCONS_00027060

Length=637


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 802285760


Query= TCONS_00027061

Length=637


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 802285760


Query= TCONS_00022299

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00022300

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465230 pfam16679, CDT1_C, DNA replication factor Cdt1 C-termi...  65.7    5e-14


>CDD:465230 pfam16679, CDT1_C, DNA replication factor Cdt1 C-terminal domain. 
 This is the C-terminal domain of DNA replication factor 
Cdt1. This domain binds the MCM complex.
Length=96

 Score = 65.7 bits (161),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 16/111 (14%)

Query  325  GLLERIKSKELLQSKLPPPPSKETLLRRAAAERAEEV-VAVLALLRPVGYVGSGPKAVLA  383
             LLERI++KE  +  L   P K  L RRAA          VL LL             ++
Sbjct  1    SLLERIRAKEAAK-ALAAMPRKPELERRAALLSRLPEVARVLRLL------------FVS  47

Query  384  AQKKPFQLEMIVQNVQDSLRNPISSREVEMCVELLARPDIAGQWIEVVAVN  434
             ++  F +E +VQ ++DSLR PIS  E+E  + LLA  ++A  WI +V V 
Sbjct  48   EKRSSFTMEELVQKLKDSLRTPISKEEIEEHLRLLA--ELAPDWISIVKVG  96



Lambda      K        H        a         alpha
   0.315    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 570537888


Query= TCONS_00022301

Length=940
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425714 pfam00488, MutS_V, MutS domain V. This domain is found...  326     9e-107
CDD:461579 pfam05192, MutS_III, MutS domain III. This domain is f...  194     2e-56 
CDD:426350 pfam01624, MutS_I, MutS domain I. This domain is found...  89.2    1e-21 
CDD:398730 pfam05190, MutS_IV, MutS family domain IV. This domain...  78.4    3e-18 
CDD:398728 pfam05188, MutS_II, MutS domain II. This domain is fou...  75.5    1e-16 


>CDD:425714 pfam00488, MutS_V, MutS domain V.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam01624, pfam05188, pfam05192 and 
pfam05190. The mutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
V of Thermus aquaticus MutS, which contains a Walker A motif, 
and is structurally similar to the ATPase domain of ABC transporters.
Length=188

 Score = 326 bits (839),  Expect = 9e-107, Method: Composition-based stats.
 Identities = 114/202 (56%), Positives = 141/202 (70%), Gaps = 14/202 (7%)

Query  659  LIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDCILARVGASDSQLKGVST  718
            LIITGPNMGGKSTY+RQ+ +I LMAQ G FVP   AE+ I D I  R+GASD   KG ST
Sbjct  1    LIITGPNMGGKSTYLRQVALIVLMAQIGSFVPAESAEIGIVDRIFTRIGASDDLAKGRST  60

Query  719  FMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGLFATHF  778
            FM EMLET+NIL +AT +SL+I+DELGRGTSTYDG  +AWA++EH+  +I+   LFATH+
Sbjct  61   FMVEMLETANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIKARTLFATHY  120

Query  779  HELTALADRYPKSVKNLHVVAFIGDGTNDNAGEERPKKQQVTLLYRVEPGICDQSFGIHV  838
            HELT LA++ P +VKNLH+ A            E      +  LY+V+PG  D+S+GIHV
Sbjct  121  HELTKLAEKLP-AVKNLHMAA-----------VEDD--DDIVFLYKVQPGAADKSYGIHV  166

Query  839  AELVRFPEKVVNMARQKAEELE  860
            AEL   PE VV  AR+   ELE
Sbjct  167  AELAGLPESVVERAREILAELE  188


>CDD:461579 pfam05192, MutS_III, MutS domain III.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam00488, pfam05188, pfam01624 
and pfam05190. The MutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles in 
DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
III, which is central to the structure of Thermus aquaticus 
MutS as characterized in.
Length=291

 Score = 194 bits (496),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 117/310 (38%), Gaps = 24/310 (8%)

Query  299  SALRALNLMPGPRDGSRTMSLFGLLNHCKTPVGSRLLAQWLKQPLMDLAEIEKRQQLVEA  358
            + LR L L      G +  SL GLL+  KTP+GSRLL QWL QPL DL EI +R   VE 
Sbjct  1    ATLRNLEL-TENLRGGKEGSLLGLLDRTKTPMGSRLLRQWLLQPLTDLEEINERLDAVEE  59

Query  359  FVENTELRQTLQEEHLRSIPDLYRLAKRFQRKQANLEDVVRVYQVAIRLPGFVSSLENVM  418
             +EN+ELR+ L+ E LR +PDL RL  R    +A   D++ +            SLE + 
Sbjct  60   LLENSELREDLR-ELLRRLPDLERLLSRIALGKATPRDLLALLD----------SLEKLP  108

Query  419  DEQYQTPLETEYTSKLRSHSDSLAKLEEMVETTVDLAALENHEFIIKPEFDDSLRIIRKK  478
                   L+     +  +    LA L E++E  +D                    +   +
Sbjct  109  L------LKELLLEEKSALLGELASLAELLEEAIDEEPPALLRDGGVIRDGYDEELDELR  162

Query  479  LDKLRHDMDVEHRRVAKDLDQEVDKKLFLENHRVHGW-----CFRLTRNEAGCIRNKREY  533
               L     +      +     +     L N     +      +                
Sbjct  163  DLLLDGKRLLAKLEARERERTGIKSLKVLYNKVFGYYLLLVEYYIEVSKSQKDKVPDDYI  222

Query  534  QECSTQKNGVYFTTSTMQALRREHDQLSSNYNRTQSGLVNEVVNVAASYCPVLEQLAGVL  593
            +  +T+    Y T    +  R+            +  L  E++     Y  VL + A  L
Sbjct  223  RIQTTKNAERYITPELKELERKILQAEERLLALEKE-LFEELLEEVLEYIEVLRRAAEAL  281

Query  594  AHLDVIVSFA  603
            A LDV++S A
Sbjct  282  AELDVLLSLA  291


>CDD:426350 pfam01624, MutS_I, MutS domain I.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam00488, pfam05188, pfam05192 and 
pfam05190. The MutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with globular 
domain I, which is involved in DNA binding, in Thermus aquaticus 
MutS as characterized in.
Length=113

 Score = 89.2 bits (222),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 29/117 (25%), Positives = 49/117 (42%), Gaps = 10/117 (9%)

Query  14   GFIRFYHSLSSDGNDETIRVFDRGDWYSAHGAEAEFIARTVYKTTSVLRNLGRSETGGLP  73
              +R Y  L S    + +  F  GD+Y   G +AE  AR +  T +V R  G  +   +P
Sbjct  2    PMMRQYLELKSK-YPDAVLFFRVGDFYELFGEDAEIAARELGITLTV-RKGGSGKR--IP  57

Query  74   SVTMSVTVFRNFLREALFKLNKRVEIWG-----SNGAGRGQWKLMKQASPGNLQDVE  125
               +    F  + R  + K   +V I       +   G  + ++++  +PG L D E
Sbjct  58   MAGVPEHAFERYARRLVNK-GYKVAICEQTETPAEAKGVVKREVVRVVTPGTLTDDE  113


>CDD:398730 pfam05190, MutS_IV, MutS family domain IV.  This domain is found 
in proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam01624, pfam05188, pfam05192 
and pfam00488. The mutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles 
in DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a 
mismatch binding protein. The aligned region corresponds in 
part with globular domain IV, which is involved in DNA binding, 
in Thermus aquaticus MutS as characterized in.
Length=92

 Score = 78.4 bits (194),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (6%)

Query  467  EFDDSLRIIRKKLDKLRHDMDVEHRRVAKDLDQEVDKKLFLENHRVHGWCFRLTRNEAGC  526
             FD+ L  +R  LD+L  +++   ++  + L     K L +  ++V G+   +TR+EA  
Sbjct  1    GFDEELDELRDLLDELEKELEELEKKEREKLGI---KSLKVGYNKVFGYYIEVTRSEAKK  57

Query  527  IRNKREYQECSTQKNGVYFTTSTMQALRRE  556
            + +   Y    T KNGV FTT  ++ L  E
Sbjct  58   VPS--NYIRRQTLKNGVRFTTPELKKLEDE  85


>CDD:398728 pfam05188, MutS_II, MutS domain II.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam00488, pfam01624, pfam05192 
and pfam05190. The MutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in 
non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. This domain corresponds to domain II in Thermus 
aquaticus MutS and has similarity resembles RNAse-H-like 
domains (see pfam00075).
Length=133

 Score = 75.5 bits (186),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 34/132 (26%), Positives = 51/132 (39%), Gaps = 13/132 (10%)

Query  141  VILAVKISAKASEARGVGVCFADASVRELGVSEFLDNDVYSNFESLIIQLGVKECLVQMD  200
             + A+       +    G+ F D S  E GVSEF D   +    + + +L  KE L+   
Sbjct  2    YLAAIS----RGDGNRYGLAFLDLSTGEFGVSEFED---FEELLAELSRLSPKELLLPES  54

Query  201  TNRKDVELG-KIRAIADNCGIAISERPVADFGVKDIEQDLTRLLRDERSAATLPQTELKL  259
             +   V    K+  +    G     RP   F ++   +DL                EL L
Sbjct  55   LSSSTVAESQKLLELRLRVG----RRPTWLFELEHAYEDLNEDFG-VEDLDGFGLEELPL  109

Query  260  AMGSASALIKYL  271
            A+ +A ALI YL
Sbjct  110  ALCAAGALISYL  121



Lambda      K        H        a         alpha
   0.318    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1194999344


Query= TCONS_00027062

Length=940
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425714 pfam00488, MutS_V, MutS domain V. This domain is found...  326     9e-107
CDD:461579 pfam05192, MutS_III, MutS domain III. This domain is f...  194     2e-56 
CDD:426350 pfam01624, MutS_I, MutS domain I. This domain is found...  89.2    1e-21 
CDD:398730 pfam05190, MutS_IV, MutS family domain IV. This domain...  78.4    3e-18 
CDD:398728 pfam05188, MutS_II, MutS domain II. This domain is fou...  75.5    1e-16 


>CDD:425714 pfam00488, MutS_V, MutS domain V.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam01624, pfam05188, pfam05192 and 
pfam05190. The mutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
V of Thermus aquaticus MutS, which contains a Walker A motif, 
and is structurally similar to the ATPase domain of ABC transporters.
Length=188

 Score = 326 bits (839),  Expect = 9e-107, Method: Composition-based stats.
 Identities = 114/202 (56%), Positives = 141/202 (70%), Gaps = 14/202 (7%)

Query  659  LIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDCILARVGASDSQLKGVST  718
            LIITGPNMGGKSTY+RQ+ +I LMAQ G FVP   AE+ I D I  R+GASD   KG ST
Sbjct  1    LIITGPNMGGKSTYLRQVALIVLMAQIGSFVPAESAEIGIVDRIFTRIGASDDLAKGRST  60

Query  719  FMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGLFATHF  778
            FM EMLET+NIL +AT +SL+I+DELGRGTSTYDG  +AWA++EH+  +I+   LFATH+
Sbjct  61   FMVEMLETANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIKARTLFATHY  120

Query  779  HELTALADRYPKSVKNLHVVAFIGDGTNDNAGEERPKKQQVTLLYRVEPGICDQSFGIHV  838
            HELT LA++ P +VKNLH+ A            E      +  LY+V+PG  D+S+GIHV
Sbjct  121  HELTKLAEKLP-AVKNLHMAA-----------VEDD--DDIVFLYKVQPGAADKSYGIHV  166

Query  839  AELVRFPEKVVNMARQKAEELE  860
            AEL   PE VV  AR+   ELE
Sbjct  167  AELAGLPESVVERAREILAELE  188


>CDD:461579 pfam05192, MutS_III, MutS domain III.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam00488, pfam05188, pfam01624 
and pfam05190. The MutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles in 
DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
III, which is central to the structure of Thermus aquaticus 
MutS as characterized in.
Length=291

 Score = 194 bits (496),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 117/310 (38%), Gaps = 24/310 (8%)

Query  299  SALRALNLMPGPRDGSRTMSLFGLLNHCKTPVGSRLLAQWLKQPLMDLAEIEKRQQLVEA  358
            + LR L L      G +  SL GLL+  KTP+GSRLL QWL QPL DL EI +R   VE 
Sbjct  1    ATLRNLEL-TENLRGGKEGSLLGLLDRTKTPMGSRLLRQWLLQPLTDLEEINERLDAVEE  59

Query  359  FVENTELRQTLQEEHLRSIPDLYRLAKRFQRKQANLEDVVRVYQVAIRLPGFVSSLENVM  418
             +EN+ELR+ L+ E LR +PDL RL  R    +A   D++ +            SLE + 
Sbjct  60   LLENSELREDLR-ELLRRLPDLERLLSRIALGKATPRDLLALLD----------SLEKLP  108

Query  419  DEQYQTPLETEYTSKLRSHSDSLAKLEEMVETTVDLAALENHEFIIKPEFDDSLRIIRKK  478
                   L+     +  +    LA L E++E  +D                    +   +
Sbjct  109  L------LKELLLEEKSALLGELASLAELLEEAIDEEPPALLRDGGVIRDGYDEELDELR  162

Query  479  LDKLRHDMDVEHRRVAKDLDQEVDKKLFLENHRVHGW-----CFRLTRNEAGCIRNKREY  533
               L     +      +     +     L N     +      +                
Sbjct  163  DLLLDGKRLLAKLEARERERTGIKSLKVLYNKVFGYYLLLVEYYIEVSKSQKDKVPDDYI  222

Query  534  QECSTQKNGVYFTTSTMQALRREHDQLSSNYNRTQSGLVNEVVNVAASYCPVLEQLAGVL  593
            +  +T+    Y T    +  R+            +  L  E++     Y  VL + A  L
Sbjct  223  RIQTTKNAERYITPELKELERKILQAEERLLALEKE-LFEELLEEVLEYIEVLRRAAEAL  281

Query  594  AHLDVIVSFA  603
            A LDV++S A
Sbjct  282  AELDVLLSLA  291


>CDD:426350 pfam01624, MutS_I, MutS domain I.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam00488, pfam05188, pfam05192 and 
pfam05190. The MutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with globular 
domain I, which is involved in DNA binding, in Thermus aquaticus 
MutS as characterized in.
Length=113

 Score = 89.2 bits (222),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 29/117 (25%), Positives = 49/117 (42%), Gaps = 10/117 (9%)

Query  14   GFIRFYHSLSSDGNDETIRVFDRGDWYSAHGAEAEFIARTVYKTTSVLRNLGRSETGGLP  73
              +R Y  L S    + +  F  GD+Y   G +AE  AR +  T +V R  G  +   +P
Sbjct  2    PMMRQYLELKSK-YPDAVLFFRVGDFYELFGEDAEIAARELGITLTV-RKGGSGKR--IP  57

Query  74   SVTMSVTVFRNFLREALFKLNKRVEIWG-----SNGAGRGQWKLMKQASPGNLQDVE  125
               +    F  + R  + K   +V I       +   G  + ++++  +PG L D E
Sbjct  58   MAGVPEHAFERYARRLVNK-GYKVAICEQTETPAEAKGVVKREVVRVVTPGTLTDDE  113


>CDD:398730 pfam05190, MutS_IV, MutS family domain IV.  This domain is found 
in proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam01624, pfam05188, pfam05192 
and pfam00488. The mutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles 
in DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a 
mismatch binding protein. The aligned region corresponds in 
part with globular domain IV, which is involved in DNA binding, 
in Thermus aquaticus MutS as characterized in.
Length=92

 Score = 78.4 bits (194),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (6%)

Query  467  EFDDSLRIIRKKLDKLRHDMDVEHRRVAKDLDQEVDKKLFLENHRVHGWCFRLTRNEAGC  526
             FD+ L  +R  LD+L  +++   ++  + L     K L +  ++V G+   +TR+EA  
Sbjct  1    GFDEELDELRDLLDELEKELEELEKKEREKLGI---KSLKVGYNKVFGYYIEVTRSEAKK  57

Query  527  IRNKREYQECSTQKNGVYFTTSTMQALRRE  556
            + +   Y    T KNGV FTT  ++ L  E
Sbjct  58   VPS--NYIRRQTLKNGVRFTTPELKKLEDE  85


>CDD:398728 pfam05188, MutS_II, MutS domain II.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam00488, pfam01624, pfam05192 
and pfam05190. The MutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in 
non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. This domain corresponds to domain II in Thermus 
aquaticus MutS and has similarity resembles RNAse-H-like 
domains (see pfam00075).
Length=133

 Score = 75.5 bits (186),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 34/132 (26%), Positives = 51/132 (39%), Gaps = 13/132 (10%)

Query  141  VILAVKISAKASEARGVGVCFADASVRELGVSEFLDNDVYSNFESLIIQLGVKECLVQMD  200
             + A+       +    G+ F D S  E GVSEF D   +    + + +L  KE L+   
Sbjct  2    YLAAIS----RGDGNRYGLAFLDLSTGEFGVSEFED---FEELLAELSRLSPKELLLPES  54

Query  201  TNRKDVELG-KIRAIADNCGIAISERPVADFGVKDIEQDLTRLLRDERSAATLPQTELKL  259
             +   V    K+  +    G     RP   F ++   +DL                EL L
Sbjct  55   LSSSTVAESQKLLELRLRVG----RRPTWLFELEHAYEDLNEDFG-VEDLDGFGLEELPL  109

Query  260  AMGSASALIKYL  271
            A+ +A ALI YL
Sbjct  110  ALCAAGALISYL  121



Lambda      K        H        a         alpha
   0.318    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1194999344


Query= TCONS_00027063

Length=940
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425714 pfam00488, MutS_V, MutS domain V. This domain is found...  326     9e-107
CDD:461579 pfam05192, MutS_III, MutS domain III. This domain is f...  194     2e-56 
CDD:426350 pfam01624, MutS_I, MutS domain I. This domain is found...  89.2    1e-21 
CDD:398730 pfam05190, MutS_IV, MutS family domain IV. This domain...  78.4    3e-18 
CDD:398728 pfam05188, MutS_II, MutS domain II. This domain is fou...  75.5    1e-16 


>CDD:425714 pfam00488, MutS_V, MutS domain V.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam01624, pfam05188, pfam05192 and 
pfam05190. The mutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
V of Thermus aquaticus MutS, which contains a Walker A motif, 
and is structurally similar to the ATPase domain of ABC transporters.
Length=188

 Score = 326 bits (839),  Expect = 9e-107, Method: Composition-based stats.
 Identities = 114/202 (56%), Positives = 141/202 (70%), Gaps = 14/202 (7%)

Query  659  LIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDCILARVGASDSQLKGVST  718
            LIITGPNMGGKSTY+RQ+ +I LMAQ G FVP   AE+ I D I  R+GASD   KG ST
Sbjct  1    LIITGPNMGGKSTYLRQVALIVLMAQIGSFVPAESAEIGIVDRIFTRIGASDDLAKGRST  60

Query  719  FMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGLFATHF  778
            FM EMLET+NIL +AT +SL+I+DELGRGTSTYDG  +AWA++EH+  +I+   LFATH+
Sbjct  61   FMVEMLETANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIKARTLFATHY  120

Query  779  HELTALADRYPKSVKNLHVVAFIGDGTNDNAGEERPKKQQVTLLYRVEPGICDQSFGIHV  838
            HELT LA++ P +VKNLH+ A            E      +  LY+V+PG  D+S+GIHV
Sbjct  121  HELTKLAEKLP-AVKNLHMAA-----------VEDD--DDIVFLYKVQPGAADKSYGIHV  166

Query  839  AELVRFPEKVVNMARQKAEELE  860
            AEL   PE VV  AR+   ELE
Sbjct  167  AELAGLPESVVERAREILAELE  188


>CDD:461579 pfam05192, MutS_III, MutS domain III.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam00488, pfam05188, pfam01624 
and pfam05190. The MutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles in 
DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
III, which is central to the structure of Thermus aquaticus 
MutS as characterized in.
Length=291

 Score = 194 bits (496),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 117/310 (38%), Gaps = 24/310 (8%)

Query  299  SALRALNLMPGPRDGSRTMSLFGLLNHCKTPVGSRLLAQWLKQPLMDLAEIEKRQQLVEA  358
            + LR L L      G +  SL GLL+  KTP+GSRLL QWL QPL DL EI +R   VE 
Sbjct  1    ATLRNLEL-TENLRGGKEGSLLGLLDRTKTPMGSRLLRQWLLQPLTDLEEINERLDAVEE  59

Query  359  FVENTELRQTLQEEHLRSIPDLYRLAKRFQRKQANLEDVVRVYQVAIRLPGFVSSLENVM  418
             +EN+ELR+ L+ E LR +PDL RL  R    +A   D++ +            SLE + 
Sbjct  60   LLENSELREDLR-ELLRRLPDLERLLSRIALGKATPRDLLALLD----------SLEKLP  108

Query  419  DEQYQTPLETEYTSKLRSHSDSLAKLEEMVETTVDLAALENHEFIIKPEFDDSLRIIRKK  478
                   L+     +  +    LA L E++E  +D                    +   +
Sbjct  109  L------LKELLLEEKSALLGELASLAELLEEAIDEEPPALLRDGGVIRDGYDEELDELR  162

Query  479  LDKLRHDMDVEHRRVAKDLDQEVDKKLFLENHRVHGW-----CFRLTRNEAGCIRNKREY  533
               L     +      +     +     L N     +      +                
Sbjct  163  DLLLDGKRLLAKLEARERERTGIKSLKVLYNKVFGYYLLLVEYYIEVSKSQKDKVPDDYI  222

Query  534  QECSTQKNGVYFTTSTMQALRREHDQLSSNYNRTQSGLVNEVVNVAASYCPVLEQLAGVL  593
            +  +T+    Y T    +  R+            +  L  E++     Y  VL + A  L
Sbjct  223  RIQTTKNAERYITPELKELERKILQAEERLLALEKE-LFEELLEEVLEYIEVLRRAAEAL  281

Query  594  AHLDVIVSFA  603
            A LDV++S A
Sbjct  282  AELDVLLSLA  291


>CDD:426350 pfam01624, MutS_I, MutS domain I.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam00488, pfam05188, pfam05192 and 
pfam05190. The MutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with globular 
domain I, which is involved in DNA binding, in Thermus aquaticus 
MutS as characterized in.
Length=113

 Score = 89.2 bits (222),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 29/117 (25%), Positives = 49/117 (42%), Gaps = 10/117 (9%)

Query  14   GFIRFYHSLSSDGNDETIRVFDRGDWYSAHGAEAEFIARTVYKTTSVLRNLGRSETGGLP  73
              +R Y  L S    + +  F  GD+Y   G +AE  AR +  T +V R  G  +   +P
Sbjct  2    PMMRQYLELKSK-YPDAVLFFRVGDFYELFGEDAEIAARELGITLTV-RKGGSGKR--IP  57

Query  74   SVTMSVTVFRNFLREALFKLNKRVEIWG-----SNGAGRGQWKLMKQASPGNLQDVE  125
               +    F  + R  + K   +V I       +   G  + ++++  +PG L D E
Sbjct  58   MAGVPEHAFERYARRLVNK-GYKVAICEQTETPAEAKGVVKREVVRVVTPGTLTDDE  113


>CDD:398730 pfam05190, MutS_IV, MutS family domain IV.  This domain is found 
in proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam01624, pfam05188, pfam05192 
and pfam00488. The mutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles 
in DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a 
mismatch binding protein. The aligned region corresponds in 
part with globular domain IV, which is involved in DNA binding, 
in Thermus aquaticus MutS as characterized in.
Length=92

 Score = 78.4 bits (194),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (6%)

Query  467  EFDDSLRIIRKKLDKLRHDMDVEHRRVAKDLDQEVDKKLFLENHRVHGWCFRLTRNEAGC  526
             FD+ L  +R  LD+L  +++   ++  + L     K L +  ++V G+   +TR+EA  
Sbjct  1    GFDEELDELRDLLDELEKELEELEKKEREKLGI---KSLKVGYNKVFGYYIEVTRSEAKK  57

Query  527  IRNKREYQECSTQKNGVYFTTSTMQALRRE  556
            + +   Y    T KNGV FTT  ++ L  E
Sbjct  58   VPS--NYIRRQTLKNGVRFTTPELKKLEDE  85


>CDD:398728 pfam05188, MutS_II, MutS domain II.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam00488, pfam01624, pfam05192 
and pfam05190. The MutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in 
non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. This domain corresponds to domain II in Thermus 
aquaticus MutS and has similarity resembles RNAse-H-like 
domains (see pfam00075).
Length=133

 Score = 75.5 bits (186),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 34/132 (26%), Positives = 51/132 (39%), Gaps = 13/132 (10%)

Query  141  VILAVKISAKASEARGVGVCFADASVRELGVSEFLDNDVYSNFESLIIQLGVKECLVQMD  200
             + A+       +    G+ F D S  E GVSEF D   +    + + +L  KE L+   
Sbjct  2    YLAAIS----RGDGNRYGLAFLDLSTGEFGVSEFED---FEELLAELSRLSPKELLLPES  54

Query  201  TNRKDVELG-KIRAIADNCGIAISERPVADFGVKDIEQDLTRLLRDERSAATLPQTELKL  259
             +   V    K+  +    G     RP   F ++   +DL                EL L
Sbjct  55   LSSSTVAESQKLLELRLRVG----RRPTWLFELEHAYEDLNEDFG-VEDLDGFGLEELPL  109

Query  260  AMGSASALIKYL  271
            A+ +A ALI YL
Sbjct  110  ALCAAGALISYL  121



Lambda      K        H        a         alpha
   0.318    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1194999344


Query= TCONS_00027064

Length=864
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425714 pfam00488, MutS_V, MutS domain V. This domain is found...  326     3e-107
CDD:461579 pfam05192, MutS_III, MutS domain III. This domain is f...  194     2e-56 
CDD:398730 pfam05190, MutS_IV, MutS family domain IV. This domain...  78.4    4e-18 
CDD:398728 pfam05188, MutS_II, MutS domain II. This domain is fou...  75.1    2e-16 


>CDD:425714 pfam00488, MutS_V, MutS domain V.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam01624, pfam05188, pfam05192 and 
pfam05190. The mutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
V of Thermus aquaticus MutS, which contains a Walker A motif, 
and is structurally similar to the ATPase domain of ABC transporters.
Length=188

 Score = 326 bits (838),  Expect = 3e-107, Method: Composition-based stats.
 Identities = 114/202 (56%), Positives = 141/202 (70%), Gaps = 14/202 (7%)

Query  583  LIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDCILARVGASDSQLKGVST  642
            LIITGPNMGGKSTY+RQ+ +I LMAQ G FVP   AE+ I D I  R+GASD   KG ST
Sbjct  1    LIITGPNMGGKSTYLRQVALIVLMAQIGSFVPAESAEIGIVDRIFTRIGASDDLAKGRST  60

Query  643  FMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGLFATHF  702
            FM EMLET+NIL +AT +SL+I+DELGRGTSTYDG  +AWA++EH+  +I+   LFATH+
Sbjct  61   FMVEMLETANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIKARTLFATHY  120

Query  703  HELTALADRYPKSVKNLHVVAFIGDGTNDNAGEERPKKQQVTLLYRVEPGICDQSFGIHV  762
            HELT LA++ P +VKNLH+ A            E      +  LY+V+PG  D+S+GIHV
Sbjct  121  HELTKLAEKLP-AVKNLHMAA-----------VEDD--DDIVFLYKVQPGAADKSYGIHV  166

Query  763  AELVRFPEKVVNMARQKAEELE  784
            AEL   PE VV  AR+   ELE
Sbjct  167  AELAGLPESVVERAREILAELE  188


>CDD:461579 pfam05192, MutS_III, MutS domain III.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam00488, pfam05188, pfam01624 
and pfam05190. The MutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles in 
DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
III, which is central to the structure of Thermus aquaticus 
MutS as characterized in.
Length=291

 Score = 194 bits (494),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 117/310 (38%), Gaps = 24/310 (8%)

Query  223  SALRALNLMPGPRDGSRTMSLFGLLNHCKTPVGSRLLAQWLKQPLMDLAEIEKRQQLVEA  282
            + LR L L      G +  SL GLL+  KTP+GSRLL QWL QPL DL EI +R   VE 
Sbjct  1    ATLRNLEL-TENLRGGKEGSLLGLLDRTKTPMGSRLLRQWLLQPLTDLEEINERLDAVEE  59

Query  283  FVENTELRQTLQEEHLRSIPDLYRLAKRFQRKQANLEDVVRVYQVAIRLPGFVSSLENVM  342
             +EN+ELR+ L+ E LR +PDL RL  R    +A   D++ +            SLE + 
Sbjct  60   LLENSELREDLR-ELLRRLPDLERLLSRIALGKATPRDLLALLD----------SLEKLP  108

Query  343  DEQYQTPLETEYTSKLRSHSDSLAKLEEMVETTVDLAALENHEFIIKPEFDDSLRIIRKK  402
                   L+     +  +    LA L E++E  +D                    +   +
Sbjct  109  L------LKELLLEEKSALLGELASLAELLEEAIDEEPPALLRDGGVIRDGYDEELDELR  162

Query  403  LDKLRHDMDVEHRRVAKDLDQEVDKKLFLENHRVHGW-----CFRLTRNEAGCIRNKREY  457
               L     +      +     +     L N     +      +                
Sbjct  163  DLLLDGKRLLAKLEARERERTGIKSLKVLYNKVFGYYLLLVEYYIEVSKSQKDKVPDDYI  222

Query  458  QECSTQKNGVYFTTSTMQALRREHDQLSSNYNRTQSGLVNEVVNVAASYCPVLEQLAGVL  517
            +  +T+    Y T    +  R+            +  L  E++     Y  VL + A  L
Sbjct  223  RIQTTKNAERYITPELKELERKILQAEERLLALEKE-LFEELLEEVLEYIEVLRRAAEAL  281

Query  518  AHLDVIVSFA  527
            A LDV++S A
Sbjct  282  AELDVLLSLA  291


>CDD:398730 pfam05190, MutS_IV, MutS family domain IV.  This domain is found 
in proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam01624, pfam05188, pfam05192 
and pfam00488. The mutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles 
in DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a 
mismatch binding protein. The aligned region corresponds in 
part with globular domain IV, which is involved in DNA binding, 
in Thermus aquaticus MutS as characterized in.
Length=92

 Score = 78.4 bits (194),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (6%)

Query  391  EFDDSLRIIRKKLDKLRHDMDVEHRRVAKDLDQEVDKKLFLENHRVHGWCFRLTRNEAGC  450
             FD+ L  +R  LD+L  +++   ++  + L     K L +  ++V G+   +TR+EA  
Sbjct  1    GFDEELDELRDLLDELEKELEELEKKEREKLGI---KSLKVGYNKVFGYYIEVTRSEAKK  57

Query  451  IRNKREYQECSTQKNGVYFTTSTMQALRRE  480
            + +   Y    T KNGV FTT  ++ L  E
Sbjct  58   VPS--NYIRRQTLKNGVRFTTPELKKLEDE  85


>CDD:398728 pfam05188, MutS_II, MutS domain II.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam00488, pfam01624, pfam05192 
and pfam05190. The MutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in 
non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. This domain corresponds to domain II in Thermus 
aquaticus MutS and has similarity resembles RNAse-H-like 
domains (see pfam00075).
Length=133

 Score = 75.1 bits (185),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 34/132 (26%), Positives = 51/132 (39%), Gaps = 13/132 (10%)

Query  65   VILAVKISAKASEARGVGVCFADASVRELGVSEFLDNDVYSNFESLIIQLGVKECLVQMD  124
             + A+       +    G+ F D S  E GVSEF D   +    + + +L  KE L+   
Sbjct  2    YLAAIS----RGDGNRYGLAFLDLSTGEFGVSEFED---FEELLAELSRLSPKELLLPES  54

Query  125  TNRKDVELG-KIRAIADNCGIAISERPVADFGVKDIEQDLTRLLRDERSAATLPQTELKL  183
             +   V    K+  +    G     RP   F ++   +DL                EL L
Sbjct  55   LSSSTVAESQKLLELRLRVG----RRPTWLFELEHAYEDLNEDFG-VEDLDGFGLEELPL  109

Query  184  AMGSASALIKYL  195
            A+ +A ALI YL
Sbjct  110  ALCAAGALISYL  121



Lambda      K        H        a         alpha
   0.318    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1103910266


Query= TCONS_00027065

Length=940
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425714 pfam00488, MutS_V, MutS domain V. This domain is found...  326     9e-107
CDD:461579 pfam05192, MutS_III, MutS domain III. This domain is f...  194     2e-56 
CDD:426350 pfam01624, MutS_I, MutS domain I. This domain is found...  89.2    1e-21 
CDD:398730 pfam05190, MutS_IV, MutS family domain IV. This domain...  78.4    3e-18 
CDD:398728 pfam05188, MutS_II, MutS domain II. This domain is fou...  75.5    1e-16 


>CDD:425714 pfam00488, MutS_V, MutS domain V.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam01624, pfam05188, pfam05192 and 
pfam05190. The mutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
V of Thermus aquaticus MutS, which contains a Walker A motif, 
and is structurally similar to the ATPase domain of ABC transporters.
Length=188

 Score = 326 bits (839),  Expect = 9e-107, Method: Composition-based stats.
 Identities = 114/202 (56%), Positives = 141/202 (70%), Gaps = 14/202 (7%)

Query  659  LIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDCILARVGASDSQLKGVST  718
            LIITGPNMGGKSTY+RQ+ +I LMAQ G FVP   AE+ I D I  R+GASD   KG ST
Sbjct  1    LIITGPNMGGKSTYLRQVALIVLMAQIGSFVPAESAEIGIVDRIFTRIGASDDLAKGRST  60

Query  719  FMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGLFATHF  778
            FM EMLET+NIL +AT +SL+I+DELGRGTSTYDG  +AWA++EH+  +I+   LFATH+
Sbjct  61   FMVEMLETANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIKARTLFATHY  120

Query  779  HELTALADRYPKSVKNLHVVAFIGDGTNDNAGEERPKKQQVTLLYRVEPGICDQSFGIHV  838
            HELT LA++ P +VKNLH+ A            E      +  LY+V+PG  D+S+GIHV
Sbjct  121  HELTKLAEKLP-AVKNLHMAA-----------VEDD--DDIVFLYKVQPGAADKSYGIHV  166

Query  839  AELVRFPEKVVNMARQKAEELE  860
            AEL   PE VV  AR+   ELE
Sbjct  167  AELAGLPESVVERAREILAELE  188


>CDD:461579 pfam05192, MutS_III, MutS domain III.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam00488, pfam05188, pfam01624 
and pfam05190. The MutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles in 
DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
III, which is central to the structure of Thermus aquaticus 
MutS as characterized in.
Length=291

 Score = 194 bits (496),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 117/310 (38%), Gaps = 24/310 (8%)

Query  299  SALRALNLMPGPRDGSRTMSLFGLLNHCKTPVGSRLLAQWLKQPLMDLAEIEKRQQLVEA  358
            + LR L L      G +  SL GLL+  KTP+GSRLL QWL QPL DL EI +R   VE 
Sbjct  1    ATLRNLEL-TENLRGGKEGSLLGLLDRTKTPMGSRLLRQWLLQPLTDLEEINERLDAVEE  59

Query  359  FVENTELRQTLQEEHLRSIPDLYRLAKRFQRKQANLEDVVRVYQVAIRLPGFVSSLENVM  418
             +EN+ELR+ L+ E LR +PDL RL  R    +A   D++ +            SLE + 
Sbjct  60   LLENSELREDLR-ELLRRLPDLERLLSRIALGKATPRDLLALLD----------SLEKLP  108

Query  419  DEQYQTPLETEYTSKLRSHSDSLAKLEEMVETTVDLAALENHEFIIKPEFDDSLRIIRKK  478
                   L+     +  +    LA L E++E  +D                    +   +
Sbjct  109  L------LKELLLEEKSALLGELASLAELLEEAIDEEPPALLRDGGVIRDGYDEELDELR  162

Query  479  LDKLRHDMDVEHRRVAKDLDQEVDKKLFLENHRVHGW-----CFRLTRNEAGCIRNKREY  533
               L     +      +     +     L N     +      +                
Sbjct  163  DLLLDGKRLLAKLEARERERTGIKSLKVLYNKVFGYYLLLVEYYIEVSKSQKDKVPDDYI  222

Query  534  QECSTQKNGVYFTTSTMQALRREHDQLSSNYNRTQSGLVNEVVNVAASYCPVLEQLAGVL  593
            +  +T+    Y T    +  R+            +  L  E++     Y  VL + A  L
Sbjct  223  RIQTTKNAERYITPELKELERKILQAEERLLALEKE-LFEELLEEVLEYIEVLRRAAEAL  281

Query  594  AHLDVIVSFA  603
            A LDV++S A
Sbjct  282  AELDVLLSLA  291


>CDD:426350 pfam01624, MutS_I, MutS domain I.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam00488, pfam05188, pfam05192 and 
pfam05190. The MutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with globular 
domain I, which is involved in DNA binding, in Thermus aquaticus 
MutS as characterized in.
Length=113

 Score = 89.2 bits (222),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 29/117 (25%), Positives = 49/117 (42%), Gaps = 10/117 (9%)

Query  14   GFIRFYHSLSSDGNDETIRVFDRGDWYSAHGAEAEFIARTVYKTTSVLRNLGRSETGGLP  73
              +R Y  L S    + +  F  GD+Y   G +AE  AR +  T +V R  G  +   +P
Sbjct  2    PMMRQYLELKSK-YPDAVLFFRVGDFYELFGEDAEIAARELGITLTV-RKGGSGKR--IP  57

Query  74   SVTMSVTVFRNFLREALFKLNKRVEIWG-----SNGAGRGQWKLMKQASPGNLQDVE  125
               +    F  + R  + K   +V I       +   G  + ++++  +PG L D E
Sbjct  58   MAGVPEHAFERYARRLVNK-GYKVAICEQTETPAEAKGVVKREVVRVVTPGTLTDDE  113


>CDD:398730 pfam05190, MutS_IV, MutS family domain IV.  This domain is found 
in proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam01624, pfam05188, pfam05192 
and pfam00488. The mutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles 
in DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a 
mismatch binding protein. The aligned region corresponds in 
part with globular domain IV, which is involved in DNA binding, 
in Thermus aquaticus MutS as characterized in.
Length=92

 Score = 78.4 bits (194),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (6%)

Query  467  EFDDSLRIIRKKLDKLRHDMDVEHRRVAKDLDQEVDKKLFLENHRVHGWCFRLTRNEAGC  526
             FD+ L  +R  LD+L  +++   ++  + L     K L +  ++V G+   +TR+EA  
Sbjct  1    GFDEELDELRDLLDELEKELEELEKKEREKLGI---KSLKVGYNKVFGYYIEVTRSEAKK  57

Query  527  IRNKREYQECSTQKNGVYFTTSTMQALRRE  556
            + +   Y    T KNGV FTT  ++ L  E
Sbjct  58   VPS--NYIRRQTLKNGVRFTTPELKKLEDE  85


>CDD:398728 pfam05188, MutS_II, MutS domain II.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam00488, pfam01624, pfam05192 
and pfam05190. The MutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in 
non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. This domain corresponds to domain II in Thermus 
aquaticus MutS and has similarity resembles RNAse-H-like 
domains (see pfam00075).
Length=133

 Score = 75.5 bits (186),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 34/132 (26%), Positives = 51/132 (39%), Gaps = 13/132 (10%)

Query  141  VILAVKISAKASEARGVGVCFADASVRELGVSEFLDNDVYSNFESLIIQLGVKECLVQMD  200
             + A+       +    G+ F D S  E GVSEF D   +    + + +L  KE L+   
Sbjct  2    YLAAIS----RGDGNRYGLAFLDLSTGEFGVSEFED---FEELLAELSRLSPKELLLPES  54

Query  201  TNRKDVELG-KIRAIADNCGIAISERPVADFGVKDIEQDLTRLLRDERSAATLPQTELKL  259
             +   V    K+  +    G     RP   F ++   +DL                EL L
Sbjct  55   LSSSTVAESQKLLELRLRVG----RRPTWLFELEHAYEDLNEDFG-VEDLDGFGLEELPL  109

Query  260  AMGSASALIKYL  271
            A+ +A ALI YL
Sbjct  110  ALCAAGALISYL  121



Lambda      K        H        a         alpha
   0.318    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0757    0.140     1.90     42.6     43.6 

Effective search space used: 1194999344


Query= TCONS_00022302

Length=940
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425714 pfam00488, MutS_V, MutS domain V. This domain is found...  326     9e-107
CDD:461579 pfam05192, MutS_III, MutS domain III. This domain is f...  194     2e-56 
CDD:426350 pfam01624, MutS_I, MutS domain I. This domain is found...  89.2    1e-21 
CDD:398730 pfam05190, MutS_IV, MutS family domain IV. This domain...  78.4    3e-18 
CDD:398728 pfam05188, MutS_II, MutS domain II. This domain is fou...  75.5    1e-16 


>CDD:425714 pfam00488, MutS_V, MutS domain V.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam01624, pfam05188, pfam05192 and 
pfam05190. The mutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
V of Thermus aquaticus MutS, which contains a Walker A motif, 
and is structurally similar to the ATPase domain of ABC transporters.
Length=188

 Score = 326 bits (839),  Expect = 9e-107, Method: Composition-based stats.
 Identities = 114/202 (56%), Positives = 141/202 (70%), Gaps = 14/202 (7%)

Query  659  LIITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTIFDCILARVGASDSQLKGVST  718
            LIITGPNMGGKSTY+RQ+ +I LMAQ G FVP   AE+ I D I  R+GASD   KG ST
Sbjct  1    LIITGPNMGGKSTYLRQVALIVLMAQIGSFVPAESAEIGIVDRIFTRIGASDDLAKGRST  60

Query  719  FMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGLFATHF  778
            FM EMLET+NIL +AT +SL+I+DELGRGTSTYDG  +AWA++EH+  +I+   LFATH+
Sbjct  61   FMVEMLETANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAEHLAEKIKARTLFATHY  120

Query  779  HELTALADRYPKSVKNLHVVAFIGDGTNDNAGEERPKKQQVTLLYRVEPGICDQSFGIHV  838
            HELT LA++ P +VKNLH+ A            E      +  LY+V+PG  D+S+GIHV
Sbjct  121  HELTKLAEKLP-AVKNLHMAA-----------VEDD--DDIVFLYKVQPGAADKSYGIHV  166

Query  839  AELVRFPEKVVNMARQKAEELE  860
            AEL   PE VV  AR+   ELE
Sbjct  167  AELAGLPESVVERAREILAELE  188


>CDD:461579 pfam05192, MutS_III, MutS domain III.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam00488, pfam05188, pfam01624 
and pfam05190. The MutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles in 
DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
III, which is central to the structure of Thermus aquaticus 
MutS as characterized in.
Length=291

 Score = 194 bits (496),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 117/310 (38%), Gaps = 24/310 (8%)

Query  299  SALRALNLMPGPRDGSRTMSLFGLLNHCKTPVGSRLLAQWLKQPLMDLAEIEKRQQLVEA  358
            + LR L L      G +  SL GLL+  KTP+GSRLL QWL QPL DL EI +R   VE 
Sbjct  1    ATLRNLEL-TENLRGGKEGSLLGLLDRTKTPMGSRLLRQWLLQPLTDLEEINERLDAVEE  59

Query  359  FVENTELRQTLQEEHLRSIPDLYRLAKRFQRKQANLEDVVRVYQVAIRLPGFVSSLENVM  418
             +EN+ELR+ L+ E LR +PDL RL  R    +A   D++ +            SLE + 
Sbjct  60   LLENSELREDLR-ELLRRLPDLERLLSRIALGKATPRDLLALLD----------SLEKLP  108

Query  419  DEQYQTPLETEYTSKLRSHSDSLAKLEEMVETTVDLAALENHEFIIKPEFDDSLRIIRKK  478
                   L+     +  +    LA L E++E  +D                    +   +
Sbjct  109  L------LKELLLEEKSALLGELASLAELLEEAIDEEPPALLRDGGVIRDGYDEELDELR  162

Query  479  LDKLRHDMDVEHRRVAKDLDQEVDKKLFLENHRVHGW-----CFRLTRNEAGCIRNKREY  533
               L     +      +     +     L N     +      +                
Sbjct  163  DLLLDGKRLLAKLEARERERTGIKSLKVLYNKVFGYYLLLVEYYIEVSKSQKDKVPDDYI  222

Query  534  QECSTQKNGVYFTTSTMQALRREHDQLSSNYNRTQSGLVNEVVNVAASYCPVLEQLAGVL  593
            +  +T+    Y T    +  R+            +  L  E++     Y  VL + A  L
Sbjct  223  RIQTTKNAERYITPELKELERKILQAEERLLALEKE-LFEELLEEVLEYIEVLRRAAEAL  281

Query  594  AHLDVIVSFA  603
            A LDV++S A
Sbjct  282  AELDVLLSLA  291


>CDD:426350 pfam01624, MutS_I, MutS domain I.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam00488, pfam05188, pfam05192 and 
pfam05190. The MutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with globular 
domain I, which is involved in DNA binding, in Thermus aquaticus 
MutS as characterized in.
Length=113

 Score = 89.2 bits (222),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 29/117 (25%), Positives = 49/117 (42%), Gaps = 10/117 (9%)

Query  14   GFIRFYHSLSSDGNDETIRVFDRGDWYSAHGAEAEFIARTVYKTTSVLRNLGRSETGGLP  73
              +R Y  L S    + +  F  GD+Y   G +AE  AR +  T +V R  G  +   +P
Sbjct  2    PMMRQYLELKSK-YPDAVLFFRVGDFYELFGEDAEIAARELGITLTV-RKGGSGKR--IP  57

Query  74   SVTMSVTVFRNFLREALFKLNKRVEIWG-----SNGAGRGQWKLMKQASPGNLQDVE  125
               +    F  + R  + K   +V I       +   G  + ++++  +PG L D E
Sbjct  58   MAGVPEHAFERYARRLVNK-GYKVAICEQTETPAEAKGVVKREVVRVVTPGTLTDDE  113


>CDD:398730 pfam05190, MutS_IV, MutS family domain IV.  This domain is found 
in proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam01624, pfam05188, pfam05192 
and pfam00488. The mutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles 
in DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a 
mismatch binding protein. The aligned region corresponds in 
part with globular domain IV, which is involved in DNA binding, 
in Thermus aquaticus MutS as characterized in.
Length=92

 Score = 78.4 bits (194),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (6%)

Query  467  EFDDSLRIIRKKLDKLRHDMDVEHRRVAKDLDQEVDKKLFLENHRVHGWCFRLTRNEAGC  526
             FD+ L  +R  LD+L  +++   ++  + L     K L +  ++V G+   +TR+EA  
Sbjct  1    GFDEELDELRDLLDELEKELEELEKKEREKLGI---KSLKVGYNKVFGYYIEVTRSEAKK  57

Query  527  IRNKREYQECSTQKNGVYFTTSTMQALRRE  556
            + +   Y    T KNGV FTT  ++ L  E
Sbjct  58   VPS--NYIRRQTLKNGVRFTTPELKKLEDE  85


>CDD:398728 pfam05188, MutS_II, MutS domain II.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam00488, pfam01624, pfam05192 
and pfam05190. The MutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in 
non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. This domain corresponds to domain II in Thermus 
aquaticus MutS and has similarity resembles RNAse-H-like 
domains (see pfam00075).
Length=133

 Score = 75.5 bits (186),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 34/132 (26%), Positives = 51/132 (39%), Gaps = 13/132 (10%)

Query  141  VILAVKISAKASEARGVGVCFADASVRELGVSEFLDNDVYSNFESLIIQLGVKECLVQMD  200
             + A+       +    G+ F D S  E GVSEF D   +    + + +L  KE L+   
Sbjct  2    YLAAIS----RGDGNRYGLAFLDLSTGEFGVSEFED---FEELLAELSRLSPKELLLPES  54

Query  201  TNRKDVELG-KIRAIADNCGIAISERPVADFGVKDIEQDLTRLLRDERSAATLPQTELKL  259
             +   V    K+  +    G     RP   F ++   +DL                EL L
Sbjct  55   LSSSTVAESQKLLELRLRVG----RRPTWLFELEHAYEDLNEDFG-VEDLDGFGLEELPL  109

Query  260  AMGSASALIKYL  271
            A+ +A ALI YL
Sbjct  110  ALCAAGALISYL  121



Lambda      K        H        a         alpha
   0.318    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1194999344


Query= TCONS_00022304

Length=735
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461527 pfam05024, Gpi1, N-acetylglucosaminyl transferase comp...  413     4e-141


>CDD:461527 pfam05024, Gpi1, N-acetylglucosaminyl transferase component (Gpi1). 
 Glycosylphosphatidylinositol (GPI) represents an important 
anchoring molecule for cell surface proteins.The first 
step in its synthesis is the transfer of N-acetylglucosamine 
(GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol 
(PI). This chemically simple step is genetically complex 
because three or four genes are required in both yeast (GPI1, 
GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), 
respectively.
Length=273

 Score = 413 bits (1064),  Expect = 4e-141, Method: Composition-based stats.
 Identities = 164/294 (56%), Positives = 218/294 (74%), Gaps = 21/294 (7%)

Query  303  AQQVDIRLQQFCYWPIQYVKLRQRKDDWESVTTSHPDYIRFYNSLWLVANDVIIGIALGS  362
            AQQ+D+RLQQ CYWP+QY++LR+R          +PDYIR YN+LWL+AND+I+GIALGS
Sbjct  1    AQQLDLRLQQLCYWPVQYLRLRKRSSLPSKY---YPDYIRLYNTLWLIANDIILGIALGS  57

Query  363  YIIDNANWVAFQINSVLTGWTVEGLQRTISWLMDWPAGLKLNNELAAFLGDLFLWVIENW  422
             +++N+  +A  ++ +L  + V+ L++ + WLM  PAGLKLN EL +FLGDLFLW+I+ W
Sbjct  58   ILLENSTAIAEFLHKLLREYLVDLLKKLLEWLMGNPAGLKLNTELNSFLGDLFLWIIDLW  117

Query  423  AGMHFLLLDLLFSFAKFGAACIANLQPYLPHVIYVVGCSSFAGASMPIALFSDLVSILTV  482
            +                    +  L P+LP ++ ++G S F GAS  ++L SDL+S+LT+
Sbjct  118  S------------------TFLFILTPFLPLLLRLLGFSGFLGASFALSLLSDLLSLLTL  159

Query  483  HIYSFYVASARIFNWQLTIIISLFHLFRGKKRNVLRHRIDSCDYDLDQLLLGTILFTVLF  542
            HIY FYV SAR++ WQL I+ SLF LFRGKKRNVLR+R+DSCDYDLDQLLLGT+LFT+L 
Sbjct  160  HIYCFYVISARLYRWQLQILGSLFRLFRGKKRNVLRNRVDSCDYDLDQLLLGTLLFTILL  219

Query  543  FLLPTVIVFYLTFASARMLIISLKAALDTCLAFLNHFPLFALMLRVKDSRRLPG  596
            FLLPTV+VFYL FA  R+ II ++A L+T LA LNHFPLFAL+LR+KD +RLPG
Sbjct  220  FLLPTVLVFYLVFALLRLAIILVQALLETLLALLNHFPLFALLLRLKDPKRLPG  273



Lambda      K        H        a         alpha
   0.326    0.140    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 932752432


Query= TCONS_00022305

Length=735
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461527 pfam05024, Gpi1, N-acetylglucosaminyl transferase comp...  413     4e-141


>CDD:461527 pfam05024, Gpi1, N-acetylglucosaminyl transferase component (Gpi1). 
 Glycosylphosphatidylinositol (GPI) represents an important 
anchoring molecule for cell surface proteins.The first 
step in its synthesis is the transfer of N-acetylglucosamine 
(GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol 
(PI). This chemically simple step is genetically complex 
because three or four genes are required in both yeast (GPI1, 
GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), 
respectively.
Length=273

 Score = 413 bits (1064),  Expect = 4e-141, Method: Composition-based stats.
 Identities = 164/294 (56%), Positives = 218/294 (74%), Gaps = 21/294 (7%)

Query  303  AQQVDIRLQQFCYWPIQYVKLRQRKDDWESVTTSHPDYIRFYNSLWLVANDVIIGIALGS  362
            AQQ+D+RLQQ CYWP+QY++LR+R          +PDYIR YN+LWL+AND+I+GIALGS
Sbjct  1    AQQLDLRLQQLCYWPVQYLRLRKRSSLPSKY---YPDYIRLYNTLWLIANDIILGIALGS  57

Query  363  YIIDNANWVAFQINSVLTGWTVEGLQRTISWLMDWPAGLKLNNELAAFLGDLFLWVIENW  422
             +++N+  +A  ++ +L  + V+ L++ + WLM  PAGLKLN EL +FLGDLFLW+I+ W
Sbjct  58   ILLENSTAIAEFLHKLLREYLVDLLKKLLEWLMGNPAGLKLNTELNSFLGDLFLWIIDLW  117

Query  423  AGMHFLLLDLLFSFAKFGAACIANLQPYLPHVIYVVGCSSFAGASMPIALFSDLVSILTV  482
            +                    +  L P+LP ++ ++G S F GAS  ++L SDL+S+LT+
Sbjct  118  S------------------TFLFILTPFLPLLLRLLGFSGFLGASFALSLLSDLLSLLTL  159

Query  483  HIYSFYVASARIFNWQLTIIISLFHLFRGKKRNVLRHRIDSCDYDLDQLLLGTILFTVLF  542
            HIY FYV SAR++ WQL I+ SLF LFRGKKRNVLR+R+DSCDYDLDQLLLGT+LFT+L 
Sbjct  160  HIYCFYVISARLYRWQLQILGSLFRLFRGKKRNVLRNRVDSCDYDLDQLLLGTLLFTILL  219

Query  543  FLLPTVIVFYLTFASARMLIISLKAALDTCLAFLNHFPLFALMLRVKDSRRLPG  596
            FLLPTV+VFYL FA  R+ II ++A L+T LA LNHFPLFAL+LR+KD +RLPG
Sbjct  220  FLLPTVLVFYLVFALLRLAIILVQALLETLLALLNHFPLFALLLRLKDPKRLPG  273



Lambda      K        H        a         alpha
   0.326    0.140    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 932752432


Query= TCONS_00022306

Length=730
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461527 pfam05024, Gpi1, N-acetylglucosaminyl transferase comp...  410     3e-140


>CDD:461527 pfam05024, Gpi1, N-acetylglucosaminyl transferase component (Gpi1). 
 Glycosylphosphatidylinositol (GPI) represents an important 
anchoring molecule for cell surface proteins.The first 
step in its synthesis is the transfer of N-acetylglucosamine 
(GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol 
(PI). This chemically simple step is genetically complex 
because three or four genes are required in both yeast (GPI1, 
GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), 
respectively.
Length=273

 Score = 410 bits (1057),  Expect = 3e-140, Method: Composition-based stats.
 Identities = 164/294 (56%), Positives = 218/294 (74%), Gaps = 21/294 (7%)

Query  298  AQQVDIRLQQFCYWPIQYVKLRQRKDDWESVTTSHPDYIRFYNSLWLVANDVIIGIALGS  357
            AQQ+D+RLQQ CYWP+QY++LR+R          +PDYIR YN+LWL+AND+I+GIALGS
Sbjct  1    AQQLDLRLQQLCYWPVQYLRLRKRSSLPSKY---YPDYIRLYNTLWLIANDIILGIALGS  57

Query  358  YIIDNANWVAFQINSVLTGWTVEGLQRTISWLMDWPAGLKLNNELAAFLGDLFLWVIENW  417
             +++N+  +A  ++ +L  + V+ L++ + WLM  PAGLKLN EL +FLGDLFLW+I+ W
Sbjct  58   ILLENSTAIAEFLHKLLREYLVDLLKKLLEWLMGNPAGLKLNTELNSFLGDLFLWIIDLW  117

Query  418  AGMHFLLLDLLFSFAKFGAACIANLQPYLPHVIYVVGCSSFAGASMPIALFSDLVSILTV  477
            +                    +  L P+LP ++ ++G S F GAS  ++L SDL+S+LT+
Sbjct  118  S------------------TFLFILTPFLPLLLRLLGFSGFLGASFALSLLSDLLSLLTL  159

Query  478  HIYSFYVASARIFNWQLTIIISLFHLFRGKKRNVLRHRIDSCDYDLDQLLLGTILFTVLF  537
            HIY FYV SAR++ WQL I+ SLF LFRGKKRNVLR+R+DSCDYDLDQLLLGT+LFT+L 
Sbjct  160  HIYCFYVISARLYRWQLQILGSLFRLFRGKKRNVLRNRVDSCDYDLDQLLLGTLLFTILL  219

Query  538  FLLPTVIVFYLTFASARMLIISLKAALDTCLAFLNHFPLFALMLRVKDSRRLPG  591
            FLLPTV+VFYL FA  R+ II ++A L+T LA LNHFPLFAL+LR+KD +RLPG
Sbjct  220  FLLPTVLVFYLVFALLRLAIILVQALLETLLALLNHFPLFALLLRLKDPKRLPG  273



Lambda      K        H        a         alpha
   0.327    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 925476672


Query= TCONS_00022307

Length=717
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461527 pfam05024, Gpi1, N-acetylglucosaminyl transferase comp...  423     2e-145


>CDD:461527 pfam05024, Gpi1, N-acetylglucosaminyl transferase component (Gpi1). 
 Glycosylphosphatidylinositol (GPI) represents an important 
anchoring molecule for cell surface proteins.The first 
step in its synthesis is the transfer of N-acetylglucosamine 
(GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol 
(PI). This chemically simple step is genetically complex 
because three or four genes are required in both yeast (GPI1, 
GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), 
respectively.
Length=273

 Score = 423 bits (1090),  Expect = 2e-145, Method: Composition-based stats.
 Identities = 164/276 (59%), Positives = 218/276 (79%), Gaps = 3/276 (1%)

Query  303  AQQVDIRLQQFCYWPIQYVKLRQRKDDWESVTTSHPDYIRFYNSLWLVANDVIIGIALGS  362
            AQQ+D+RLQQ CYWP+QY++LR+R          +PDYIR YN+LWL+AND+I+GIALGS
Sbjct  1    AQQLDLRLQQLCYWPVQYLRLRKRSSLPSKY---YPDYIRLYNTLWLIANDIILGIALGS  57

Query  363  YIIDNANWVAFQINSVLTGWTVEGLQRTISWLMDWPAGLKLNNELAAFLGDLFLWVIENW  422
             +++N+  +A  ++ +L  + V+ L++ + WLM  PAGLKLN EL +FLGDLFLW+I+ W
Sbjct  58   ILLENSTAIAEFLHKLLREYLVDLLKKLLEWLMGNPAGLKLNTELNSFLGDLFLWIIDLW  117

Query  423  AACIANLQPYLPHVIYVVGCSSFAGASMPIALFSDLVSILTVHIYSFYVASARIFNWQLT  482
            +  +  L P+LP ++ ++G S F GAS  ++L SDL+S+LT+HIY FYV SAR++ WQL 
Sbjct  118  STFLFILTPFLPLLLRLLGFSGFLGASFALSLLSDLLSLLTLHIYCFYVISARLYRWQLQ  177

Query  483  IIISLFHLFRGKKRNVLRHRIDSCDYDLDQLLLGTILFTVLFFLLPTVIVFYLTFASARM  542
            I+ SLF LFRGKKRNVLR+R+DSCDYDLDQLLLGT+LFT+L FLLPTV+VFYL FA  R+
Sbjct  178  ILGSLFRLFRGKKRNVLRNRVDSCDYDLDQLLLGTLLFTILLFLLPTVLVFYLVFALLRL  237

Query  543  LIISLKAALDTCLAFLNHFPLFALMLRVKDSRRLPG  578
             II ++A L+T LA LNHFPLFAL+LR+KD +RLPG
Sbjct  238  AIILVQALLETLLALLNHFPLFALLLRLKDPKRLPG  273



Lambda      K        H        a         alpha
   0.326    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906559696


Query= TCONS_00022308

Length=764
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396266 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease. This dom...  172     2e-50
CDD:462352 pfam08066, PMC2NT, PMC2NT (NUC016) domain. This domain...  124     3e-34
CDD:425755 pfam00570, HRDC, HRDC domain. The HRDC (Helicase and R...  65.6    4e-14


>CDD:396266 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease.  This domain is 
responsible for the 3'-5' exonuclease proofreading activity 
of E. coli DNA polymerase I (polI) and other enzymes, it catalyzes 
the hydrolysis of unpaired or mismatched nucleotides. 
This domain consists of the amino-terminal half of the Klenow 
fragment in E. coli polI it is also found in the Werner 
syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) 
and ribonuclease D (RNase D). Werner syndrome is a human 
genetic disorder causing premature aging; the WRN protein 
has helicase activity in the 3'-5' direction. The FFA-1 protein 
is required for formation of a replication foci and also 
has helicase activity; it is a homolog of the WRN protein. 
RNase D is a 3'-5' exonuclease involved in tRNA processing. 
Also found in this family is the autoantigen PM/Scl thought 
to be involved in polymyositis-scleroderma overlap syndrome.
Length=173

 Score = 172 bits (438),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 61/169 (36%), Positives = 90/169 (53%), Gaps = 3/169 (2%)

Query  228  VDTLEGVKEMLSELKSAKEIAIDLEHHDVH--SYHGLVSLMQISTRDKDWVVDTLKPWRE  285
            V T + +++++ EL +A  +A+D E   +   SY+   +L+QI T +  +++D L    +
Sbjct  4    VTTEDELEDLIEELLNAPYVAVDTETTSLDTYSYYLRGALIQIGTGEGAYIIDPLALGDD  63

Query  286  ELQILNEVFADPGILKVLHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYP-KRSLKFL  344
             L  L  +  DP I KV H +  D+  L RD G+ +  +FDT  AA  L Y    SL  L
Sbjct  64   VLSALKRLLEDPNITKVGHNAKFDLEVLARDFGIKLRNLFDTMLAAYLLGYDRSHSLADL  123

Query  345  LHKFVNFEADKRYQMADWRIRPLPSGMFDYARSDTHYLLYIYDHLRNEL  393
              K++  E DK  Q +DW+ RPL      YA  D  YLL +YD LR EL
Sbjct  124  AEKYLGVELDKEEQCSDWQARPLSEEQLRYAALDADYLLRLYDKLRKEL  172


>CDD:462352 pfam08066, PMC2NT, PMC2NT (NUC016) domain.  This domain is found 
at the N-terminus of 3'-5' exonucleases with HRDC domains, 
and also in putative exosome components.
Length=89

 Score = 124 bits (313),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 47/91 (52%), Positives = 63/91 (69%), Gaps = 2/91 (2%)

Query  19   VQMTRTVGQLSVEDLNFHRTSSVEFSESLDEQRDRILSLTSSLLRTATAGTDLLAPKLHD  78
            V  TR    L  +D++F+R+   EF+ESLDEQ  R+LSL +SLL++A + +++ AP   D
Sbjct  1    VSTTRAANALPAQDIDFYRSLDPEFAESLDEQSARLLSLINSLLQSAGSKSNIKAPG--D  58

Query  79   EDSVEDNWRGVVDVIDALLERADACLDEFTG  109
             D VED W  VVDV D+LLE+AD CLDE TG
Sbjct  59   LDDVEDRWDSVVDVNDSLLEKADICLDELTG  89


>CDD:425755 pfam00570, HRDC, HRDC domain.  The HRDC (Helicase and RNase D 
C-terminal) domain has a putative role in nucleic acid binding. 
Mutations in the HRDC domain cause human disease. It is 
interesting to note that the RecQ helicase in Deinococcus radiodurans 
has three tandem HRDC domains.
Length=68

 Score = 65.6 bits (161),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 33/68 (49%), Gaps = 0/68 (0%)

Query  450  QFAVFKAVHQWRDEVAREEDEGVQCVFPKHILFKIAQVMPLDQGTLFRTLSPVTPIAKDR  509
            Q A+ KA+ +WRDE+AREED     +FP   L +IA+ +P     L           +  
Sbjct  1    QLALLKALREWRDELAREEDVPPYVIFPDKTLLEIAEKLPRTLEELLAIPGVGPRKVERY  60

Query  510  AADLLEVI  517
              ++L  I
Sbjct  61   GEEILAAI  68



Lambda      K        H        a         alpha
   0.314    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 974951840


Query= TCONS_00022309

Length=779
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-li...  256     6e-81
CDD:461071 pfam03836, RasGAP_C, RasGAP C-terminus. This domain ca...  102     3e-26


>CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-like GTPase. 
 All alpha-helical domain that accelerates the GTPase activity 
of Ras, thereby "switching" it into an "off" position.
Length=207

 Score = 256 bits (655),  Expect = 6e-81, Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 137/209 (66%), Gaps = 2/209 (1%)

Query  193  MFQSVLTYQFDNTPEYSSLLRQNTPVSRMMTTYTRRGPGQSYLKQVLAEQINSLIELRDV  252
            +   ++  + +++   + LLR N+ VS+++ TY RR  GQ YLK+VL   +  +IE  D+
Sbjct  1    LISELIEEEIESSDNPNDLLRGNSLVSKLLETYNRRPRGQEYLKKVLGPLVRKIIEDEDL  60

Query  253  DLEINPLKVYENMVKEIEEETGSLPSHLPKSVTAEVAAENAQVQAIIEPRLKMLTDIANG  312
            DLE +P K+YE+++ + E +TG   S LP+ V+ E A E+ +V+ I E  L+ L ++A+ 
Sbjct  61   DLESDPRKIYESLINQEELKTGR--SDLPRDVSPEEAIEDPEVRQIFEDNLQKLRELADE  118

Query  313  FLTTIISSVDEAPYGIRWICKQIRSLSRRKYPDAQDQTICTLIGGFFFLRFINPAIVTPR  372
            FL  I SS+++ PYGIR+ICKQ+  L   K+PDA ++ I   IGGF FLRF  PAIV P 
Sbjct  119  FLDAIYSSLNQLPYGIRYICKQLYELLEEKFPDASEEEILNAIGGFLFLRFFCPAIVNPD  178

Query  373  SYMLIESVPTEKPRRTLTLIAKMLQNLAN  401
             + L++   + K RR LTLIAK+LQNLAN
Sbjct  179  LFGLVDHQISPKQRRNLTLIAKVLQNLAN  207


>CDD:461071 pfam03836, RasGAP_C, RasGAP C-terminus.  This domain can be found 
in the C-terminus of the IQGAP family members, including 
human IQGAP1/2/3, S. cerevisiae Iqg1 and S. pombe Rng2. Some 
members function in cytoskeletal remodelling. Human IQGAP1 
is a scaffolding protein that can assemble multi-protein complexes 
involved in cell-cell interaction, cell adherence, 
and movement via actin/tubulin-based cytoskeletal reorganization. 
IQGAP1 is also a regulator of the MAPK and Wnt/beta-catenin 
signaling pathways.Iqg1 and Rng2 are required for actomyosin 
ring construction during cytokinesis.
Length=137

 Score = 102 bits (257),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 14/129 (11%)

Query  580  VRKGIRTMELLSQLQEMGVIDRSDDFSLLRDEVEQELVHLGSLKEKVLEETKKLEEVFAT  639
            V    + +E L +L+ +GVI R +++  L +++  ++ +    +E+   E + L +    
Sbjct  2    VELKKKALENLLELESLGVISRENNYQDLLNDIANDIRNKHRRREQRQAELESLRQTLKK  61

Query  640  IRDHNAYLVGQLETYKSYLHNVRSQS--------------EGKQRKQQKHQELGPYKFTH  685
            + + N YL  QL++Y  Y+ N                     K +K+ K  + G YK++ 
Sbjct  62   LCEKNKYLEEQLDSYNDYIENCLDNLQKKKKKLFSKQYFHYRKLQKRGKLPKFGSYKYSA  121

Query  686  QQLEKEGVI  694
            +QL ++GV+
Sbjct  122  RQLYEKGVL  130



Lambda      K        H        a         alpha
   0.317    0.132    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 996779120


Query= TCONS_00022310

Length=677
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-li...  257     2e-82
CDD:461071 pfam03836, RasGAP_C, RasGAP C-terminus. This domain ca...  104     8e-27


>CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-like GTPase. 
 All alpha-helical domain that accelerates the GTPase activity 
of Ras, thereby "switching" it into an "off" position.
Length=207

 Score = 257 bits (659),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 137/209 (66%), Gaps = 2/209 (1%)

Query  91   MFQSVLTYQFDNTPEYSSLLRQNTPVSRMMTTYTRRGPGQSYLKQVLAEQINSLIELRDV  150
            +   ++  + +++   + LLR N+ VS+++ TY RR  GQ YLK+VL   +  +IE  D+
Sbjct  1    LISELIEEEIESSDNPNDLLRGNSLVSKLLETYNRRPRGQEYLKKVLGPLVRKIIEDEDL  60

Query  151  DLEINPLKVYENMVKEIEEETGSLPSHLPKSVTAEVAAENAQVQAIIEPRLKMLTDIANG  210
            DLE +P K+YE+++ + E +TG   S LP+ V+ E A E+ +V+ I E  L+ L ++A+ 
Sbjct  61   DLESDPRKIYESLINQEELKTGR--SDLPRDVSPEEAIEDPEVRQIFEDNLQKLRELADE  118

Query  211  FLTTIISSVDEAPYGIRWICKQIRSLSRRKYPDAQDQTICTLIGGFFFLRFINPAIVTPR  270
            FL  I SS+++ PYGIR+ICKQ+  L   K+PDA ++ I   IGGF FLRF  PAIV P 
Sbjct  119  FLDAIYSSLNQLPYGIRYICKQLYELLEEKFPDASEEEILNAIGGFLFLRFFCPAIVNPD  178

Query  271  SYMLIESVPTEKPRRTLTLIAKMLQNLAN  299
             + L++   + K RR LTLIAK+LQNLAN
Sbjct  179  LFGLVDHQISPKQRRNLTLIAKVLQNLAN  207


>CDD:461071 pfam03836, RasGAP_C, RasGAP C-terminus.  This domain can be found 
in the C-terminus of the IQGAP family members, including 
human IQGAP1/2/3, S. cerevisiae Iqg1 and S. pombe Rng2. Some 
members function in cytoskeletal remodelling. Human IQGAP1 
is a scaffolding protein that can assemble multi-protein complexes 
involved in cell-cell interaction, cell adherence, 
and movement via actin/tubulin-based cytoskeletal reorganization. 
IQGAP1 is also a regulator of the MAPK and Wnt/beta-catenin 
signaling pathways.Iqg1 and Rng2 are required for actomyosin 
ring construction during cytokinesis.
Length=137

 Score = 104 bits (261),  Expect = 8e-27, Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 14/129 (11%)

Query  478  VRKGIRTMELLSQLQEMGVIDRSDDFSLLRDEVEQELVHLGSLKEKVLEETKKLEEVFAT  537
            V    + +E L +L+ +GVI R +++  L +++  ++ +    +E+   E + L +    
Sbjct  2    VELKKKALENLLELESLGVISRENNYQDLLNDIANDIRNKHRRREQRQAELESLRQTLKK  61

Query  538  IRDHNAYLVGQLETYKSYLHNVRSQS--------------EGKQRKQQKHQELGPYKFTH  583
            + + N YL  QL++Y  Y+ N                     K +K+ K  + G YK++ 
Sbjct  62   LCEKNKYLEEQLDSYNDYIENCLDNLQKKKKKLFSKQYFHYRKLQKRGKLPKFGSYKYSA  121

Query  584  QQLEKEGVI  592
            +QL ++GV+
Sbjct  122  RQLYEKGVL  130



Lambda      K        H        a         alpha
   0.318    0.134    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 861277360


Query= TCONS_00027068

Length=617
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-li...  256     8e-83
CDD:461071 pfam03836, RasGAP_C, RasGAP C-terminus. This domain ca...  103     1e-26


>CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-like GTPase. 
 All alpha-helical domain that accelerates the GTPase activity 
of Ras, thereby "switching" it into an "off" position.
Length=207

 Score = 256 bits (657),  Expect = 8e-83, Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 137/209 (66%), Gaps = 2/209 (1%)

Query  31   MFQSVLTYQFDNTPEYSSLLRQNTPVSRMMTTYTRRGPGQSYLKQVLAEQINSLIELRDV  90
            +   ++  + +++   + LLR N+ VS+++ TY RR  GQ YLK+VL   +  +IE  D+
Sbjct  1    LISELIEEEIESSDNPNDLLRGNSLVSKLLETYNRRPRGQEYLKKVLGPLVRKIIEDEDL  60

Query  91   DLEINPLKVYENMVKEIEEETGSLPSHLPKSVTAEVAAENAQVQAIIEPRLKMLTDIANG  150
            DLE +P K+YE+++ + E +TG   S LP+ V+ E A E+ +V+ I E  L+ L ++A+ 
Sbjct  61   DLESDPRKIYESLINQEELKTGR--SDLPRDVSPEEAIEDPEVRQIFEDNLQKLRELADE  118

Query  151  FLTTIISSVDEAPYGIRWICKQIRSLSRRKYPDAQDQTICTLIGGFFFLRFINPAIVTPR  210
            FL  I SS+++ PYGIR+ICKQ+  L   K+PDA ++ I   IGGF FLRF  PAIV P 
Sbjct  119  FLDAIYSSLNQLPYGIRYICKQLYELLEEKFPDASEEEILNAIGGFLFLRFFCPAIVNPD  178

Query  211  SYMLIESVPTEKPRRTLTLIAKMLQNLAN  239
             + L++   + K RR LTLIAK+LQNLAN
Sbjct  179  LFGLVDHQISPKQRRNLTLIAKVLQNLAN  207


>CDD:461071 pfam03836, RasGAP_C, RasGAP C-terminus.  This domain can be found 
in the C-terminus of the IQGAP family members, including 
human IQGAP1/2/3, S. cerevisiae Iqg1 and S. pombe Rng2. Some 
members function in cytoskeletal remodelling. Human IQGAP1 
is a scaffolding protein that can assemble multi-protein complexes 
involved in cell-cell interaction, cell adherence, 
and movement via actin/tubulin-based cytoskeletal reorganization. 
IQGAP1 is also a regulator of the MAPK and Wnt/beta-catenin 
signaling pathways.Iqg1 and Rng2 are required for actomyosin 
ring construction during cytokinesis.
Length=137

 Score = 103 bits (260),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 14/129 (11%)

Query  418  VRKGIRTMELLSQLQEMGVIDRSDDFSLLRDEVEQELVHLGSLKEKVLEETKKLEEVFAT  477
            V    + +E L +L+ +GVI R +++  L +++  ++ +    +E+   E + L +    
Sbjct  2    VELKKKALENLLELESLGVISRENNYQDLLNDIANDIRNKHRRREQRQAELESLRQTLKK  61

Query  478  IRDHNAYLVGQLETYKSYLHNVRSQS--------------EGKQRKQQKHQELGPYKFTH  523
            + + N YL  QL++Y  Y+ N                     K +K+ K  + G YK++ 
Sbjct  62   LCEKNKYLEEQLDSYNDYIENCLDNLQKKKKKLFSKQYFHYRKLQKRGKLPKFGSYKYSA  121

Query  524  QQLEKEGVI  532
            +QL ++GV+
Sbjct  122  RQLYEKGVL  130



Lambda      K        H        a         alpha
   0.318    0.134    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784574700


Query= TCONS_00022311

Length=671
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-li...  257     2e-82
CDD:461071 pfam03836, RasGAP_C, RasGAP C-terminus. This domain ca...  103     1e-26


>CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-like GTPase. 
 All alpha-helical domain that accelerates the GTPase activity 
of Ras, thereby "switching" it into an "off" position.
Length=207

 Score = 257 bits (658),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 137/209 (66%), Gaps = 2/209 (1%)

Query  85   MFQSVLTYQFDNTPEYSSLLRQNTPVSRMMTTYTRRGPGQSYLKQVLAEQINSLIELRDV  144
            +   ++  + +++   + LLR N+ VS+++ TY RR  GQ YLK+VL   +  +IE  D+
Sbjct  1    LISELIEEEIESSDNPNDLLRGNSLVSKLLETYNRRPRGQEYLKKVLGPLVRKIIEDEDL  60

Query  145  DLEINPLKVYENMVKEIEEETGSLPSHLPKSVTAEVAAENAQVQAIIEPRLKMLTDIANG  204
            DLE +P K+YE+++ + E +TG   S LP+ V+ E A E+ +V+ I E  L+ L ++A+ 
Sbjct  61   DLESDPRKIYESLINQEELKTGR--SDLPRDVSPEEAIEDPEVRQIFEDNLQKLRELADE  118

Query  205  FLTTIISSVDEAPYGIRWICKQIRSLSRRKYPDAQDQTICTLIGGFFFLRFINPAIVTPR  264
            FL  I SS+++ PYGIR+ICKQ+  L   K+PDA ++ I   IGGF FLRF  PAIV P 
Sbjct  119  FLDAIYSSLNQLPYGIRYICKQLYELLEEKFPDASEEEILNAIGGFLFLRFFCPAIVNPD  178

Query  265  SYMLIESVPTEKPRRTLTLIAKMLQNLAN  293
             + L++   + K RR LTLIAK+LQNLAN
Sbjct  179  LFGLVDHQISPKQRRNLTLIAKVLQNLAN  207


>CDD:461071 pfam03836, RasGAP_C, RasGAP C-terminus.  This domain can be found 
in the C-terminus of the IQGAP family members, including 
human IQGAP1/2/3, S. cerevisiae Iqg1 and S. pombe Rng2. Some 
members function in cytoskeletal remodelling. Human IQGAP1 
is a scaffolding protein that can assemble multi-protein complexes 
involved in cell-cell interaction, cell adherence, 
and movement via actin/tubulin-based cytoskeletal reorganization. 
IQGAP1 is also a regulator of the MAPK and Wnt/beta-catenin 
signaling pathways.Iqg1 and Rng2 are required for actomyosin 
ring construction during cytokinesis.
Length=137

 Score = 103 bits (260),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 14/129 (11%)

Query  472  VRKGIRTMELLSQLQEMGVIDRSDDFSLLRDEVEQELVHLGSLKEKVLEETKKLEEVFAT  531
            V    + +E L +L+ +GVI R +++  L +++  ++ +    +E+   E + L +    
Sbjct  2    VELKKKALENLLELESLGVISRENNYQDLLNDIANDIRNKHRRREQRQAELESLRQTLKK  61

Query  532  IRDHNAYLVGQLETYKSYLHNVRSQS--------------EGKQRKQQKHQELGPYKFTH  577
            + + N YL  QL++Y  Y+ N                     K +K+ K  + G YK++ 
Sbjct  62   LCEKNKYLEEQLDSYNDYIENCLDNLQKKKKKLFSKQYFHYRKLQKRGKLPKFGSYKYSA  121

Query  578  QQLEKEGVI  586
            +QL ++GV+
Sbjct  122  RQLYEKGVL  130



Lambda      K        H        a         alpha
   0.318    0.134    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 852428620


Query= TCONS_00022312

Length=716
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-li...  256     2e-81
CDD:461071 pfam03836, RasGAP_C, RasGAP C-terminus. This domain ca...  102     3e-26


>CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-like GTPase. 
 All alpha-helical domain that accelerates the GTPase activity 
of Ras, thereby "switching" it into an "off" position.
Length=207

 Score = 256 bits (655),  Expect = 2e-81, Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 137/209 (66%), Gaps = 2/209 (1%)

Query  130  MFQSVLTYQFDNTPEYSSLLRQNTPVSRMMTTYTRRGPGQSYLKQVLAEQINSLIELRDV  189
            +   ++  + +++   + LLR N+ VS+++ TY RR  GQ YLK+VL   +  +IE  D+
Sbjct  1    LISELIEEEIESSDNPNDLLRGNSLVSKLLETYNRRPRGQEYLKKVLGPLVRKIIEDEDL  60

Query  190  DLEINPLKVYENMVKEIEEETGSLPSHLPKSVTAEVAAENAQVQAIIEPRLKMLTDIANG  249
            DLE +P K+YE+++ + E +TG   S LP+ V+ E A E+ +V+ I E  L+ L ++A+ 
Sbjct  61   DLESDPRKIYESLINQEELKTGR--SDLPRDVSPEEAIEDPEVRQIFEDNLQKLRELADE  118

Query  250  FLTTIISSVDEAPYGIRWICKQIRSLSRRKYPDAQDQTICTLIGGFFFLRFINPAIVTPR  309
            FL  I SS+++ PYGIR+ICKQ+  L   K+PDA ++ I   IGGF FLRF  PAIV P 
Sbjct  119  FLDAIYSSLNQLPYGIRYICKQLYELLEEKFPDASEEEILNAIGGFLFLRFFCPAIVNPD  178

Query  310  SYMLIESVPTEKPRRTLTLIAKMLQNLAN  338
             + L++   + K RR LTLIAK+LQNLAN
Sbjct  179  LFGLVDHQISPKQRRNLTLIAKVLQNLAN  207


>CDD:461071 pfam03836, RasGAP_C, RasGAP C-terminus.  This domain can be found 
in the C-terminus of the IQGAP family members, including 
human IQGAP1/2/3, S. cerevisiae Iqg1 and S. pombe Rng2. Some 
members function in cytoskeletal remodelling. Human IQGAP1 
is a scaffolding protein that can assemble multi-protein complexes 
involved in cell-cell interaction, cell adherence, 
and movement via actin/tubulin-based cytoskeletal reorganization. 
IQGAP1 is also a regulator of the MAPK and Wnt/beta-catenin 
signaling pathways.Iqg1 and Rng2 are required for actomyosin 
ring construction during cytokinesis.
Length=137

 Score = 102 bits (257),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 14/129 (11%)

Query  517  VRKGIRTMELLSQLQEMGVIDRSDDFSLLRDEVEQELVHLGSLKEKVLEETKKLEEVFAT  576
            V    + +E L +L+ +GVI R +++  L +++  ++ +    +E+   E + L +    
Sbjct  2    VELKKKALENLLELESLGVISRENNYQDLLNDIANDIRNKHRRREQRQAELESLRQTLKK  61

Query  577  IRDHNAYLVGQLETYKSYLHNVRSQS--------------EGKQRKQQKHQELGPYKFTH  622
            + + N YL  QL++Y  Y+ N                     K +K+ K  + G YK++ 
Sbjct  62   LCEKNKYLEEQLDSYNDYIENCLDNLQKKKKKLFSKQYFHYRKLQKRGKLPKFGSYKYSA  121

Query  623  QQLEKEGVI  631
            +QL ++GV+
Sbjct  122  RQLYEKGVL  130



Lambda      K        H        a         alpha
   0.318    0.134    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905104544


Query= TCONS_00022313

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-li...  258     1e-83
CDD:461071 pfam03836, RasGAP_C, RasGAP C-terminus. This domain ca...  105     2e-27


>CDD:459871 pfam00616, RasGAP, GTPase-activator protein for Ras-like GTPase. 
 All alpha-helical domain that accelerates the GTPase activity 
of Ras, thereby "switching" it into an "off" position.
Length=207

 Score = 258 bits (661),  Expect = 1e-83, Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 137/209 (66%), Gaps = 2/209 (1%)

Query  31   MFQSVLTYQFDNTPEYSSLLRQNTPVSRMMTTYTRRGPGQSYLKQVLAEQINSLIELRDV  90
            +   ++  + +++   + LLR N+ VS+++ TY RR  GQ YLK+VL   +  +IE  D+
Sbjct  1    LISELIEEEIESSDNPNDLLRGNSLVSKLLETYNRRPRGQEYLKKVLGPLVRKIIEDEDL  60

Query  91   DLEINPLKVYENMVKEIEEETGSLPSHLPKSVTAEVAAENAQVQAIIEPRLKMLTDIANG  150
            DLE +P K+YE+++ + E +TG   S LP+ V+ E A E+ +V+ I E  L+ L ++A+ 
Sbjct  61   DLESDPRKIYESLINQEELKTGR--SDLPRDVSPEEAIEDPEVRQIFEDNLQKLRELADE  118

Query  151  FLTTIISSVDEAPYGIRWICKQIRSLSRRKYPDAQDQTICTLIGGFFFLRFINPAIVTPR  210
            FL  I SS+++ PYGIR+ICKQ+  L   K+PDA ++ I   IGGF FLRF  PAIV P 
Sbjct  119  FLDAIYSSLNQLPYGIRYICKQLYELLEEKFPDASEEEILNAIGGFLFLRFFCPAIVNPD  178

Query  211  SYMLIESVPTEKPRRTLTLIAKMLQNLAN  239
             + L++   + K RR LTLIAK+LQNLAN
Sbjct  179  LFGLVDHQISPKQRRNLTLIAKVLQNLAN  207


>CDD:461071 pfam03836, RasGAP_C, RasGAP C-terminus.  This domain can be found 
in the C-terminus of the IQGAP family members, including 
human IQGAP1/2/3, S. cerevisiae Iqg1 and S. pombe Rng2. Some 
members function in cytoskeletal remodelling. Human IQGAP1 
is a scaffolding protein that can assemble multi-protein complexes 
involved in cell-cell interaction, cell adherence, 
and movement via actin/tubulin-based cytoskeletal reorganization. 
IQGAP1 is also a regulator of the MAPK and Wnt/beta-catenin 
signaling pathways.Iqg1 and Rng2 are required for actomyosin 
ring construction during cytokinesis.
Length=137

 Score = 105 bits (264),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 14/129 (11%)

Query  418  VRKGIRTMELLSQLQEMGVIDRSDDFSLLRDEVEQELVHLGSLKEKVLEETKKLEEVFAT  477
            V    + +E L +L+ +GVI R +++  L +++  ++ +    +E+   E + L +    
Sbjct  2    VELKKKALENLLELESLGVISRENNYQDLLNDIANDIRNKHRRREQRQAELESLRQTLKK  61

Query  478  IRDHNAYLVGQLETYKSYLHNVRSQS--------------EGKQRKQQKHQELGPYKFTH  523
            + + N YL  QL++Y  Y+ N                     K +K+ K  + G YK++ 
Sbjct  62   LCEKNKYLEEQLDSYNDYIENCLDNLQKKKKKLFSKQYFHYRKLQKRGKLPKFGSYKYSA  121

Query  524  QQLEKEGVI  532
            +QL ++GV+
Sbjct  122  RQLYEKGVL  130



Lambda      K        H        a         alpha
   0.318    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 732269720


Query= TCONS_00027069

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00022314

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain                     145     1e-43


>CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain.  
Length=151

 Score = 145 bits (369),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 90/162 (56%), Gaps = 12/162 (7%)

Query  112  YYPQYYHKTDKDGRPVYIEKLGKIDLNAMYKITTAERMLQNLVCEYEKLADPRLPACSRK  171
                Y H  DK+GRPV   +LG+ D       ++ E +++ LV   E+            
Sbjct  1    GGKVYLHGRDKEGRPVLYLRLGRHDPKK----SSEEELVRFLVLVLERALLLMPEGQ---  53

Query  172  AGKLLETCCSIMDLKGVGITSVPS-VYGYVRQASAISQNYYPERLGKLYLINAPWGFSSV  230
                +E    I+DLKG+ ++++       +++   I Q+ YPERLGK+ ++NAPW F+++
Sbjct  54   ----VEGLTVIIDLKGLSLSNMDWWSISLLKKIIKILQDNYPERLGKILIVNAPWIFNTI  109

Query  231  FNVVKGFLDPVTVQKIHVLGSNYKKELLEQIPAENLPVEFGG  272
            + ++K FLDP T +KI  L ++ ++EL + IP E LP E+GG
Sbjct  110  WKLIKPFLDPKTREKIVFLKNSNEEELEKYIPPEQLPKEYGG  151



Lambda      K        H        a         alpha
   0.316    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00027070

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0851    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00027071

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain                     145     1e-43


>CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain.  
Length=151

 Score = 145 bits (369),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 90/162 (56%), Gaps = 12/162 (7%)

Query  112  YYPQYYHKTDKDGRPVYIEKLGKIDLNAMYKITTAERMLQNLVCEYEKLADPRLPACSRK  171
                Y H  DK+GRPV   +LG+ D       ++ E +++ LV   E+            
Sbjct  1    GGKVYLHGRDKEGRPVLYLRLGRHDPKK----SSEEELVRFLVLVLERALLLMPEGQ---  53

Query  172  AGKLLETCCSIMDLKGVGITSVPS-VYGYVRQASAISQNYYPERLGKLYLINAPWGFSSV  230
                +E    I+DLKG+ ++++       +++   I Q+ YPERLGK+ ++NAPW F+++
Sbjct  54   ----VEGLTVIIDLKGLSLSNMDWWSISLLKKIIKILQDNYPERLGKILIVNAPWIFNTI  109

Query  231  FNVVKGFLDPVTVQKIHVLGSNYKKELLEQIPAENLPVEFGG  272
            + ++K FLDP T +KI  L ++ ++EL + IP E LP E+GG
Sbjct  110  WKLIKPFLDPKTREKIVFLKNSNEEELEKYIPPEQLPKEYGG  151



Lambda      K        H        a         alpha
   0.316    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00022315

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00022316

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00027072

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain                     140     1e-41


>CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain.  
Length=151

 Score = 140 bits (354),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 53/162 (33%), Positives = 88/162 (54%), Gaps = 12/162 (7%)

Query  112  YYPQYYHKTDKVSRPVYIEKLGKIDLNAMYKITTAERMLQNLVCEYEKLADPRLPACSRK  171
                Y H  DK  RPV   +LG+ D       ++ E +++ LV   E+            
Sbjct  1    GGKVYLHGRDKEGRPVLYLRLGRHDPKK----SSEEELVRFLVLVLERALLLMPEGQ---  53

Query  172  AGKLLETCCSIMDLKGVGITSVPS-VYGYVRQASAISQNYYPERLGKLYLINAPWGFSSV  230
                +E    I+DLKG+ ++++       +++   I Q+ YPERLGK+ ++NAPW F+++
Sbjct  54   ----VEGLTVIIDLKGLSLSNMDWWSISLLKKIIKILQDNYPERLGKILIVNAPWIFNTI  109

Query  231  FNVVKGFLDPVTVQKIHVLGSNYKKELLEQIPAENLPVEFGG  272
            + ++K FLDP T +KI  L ++ ++EL + IP E LP E+GG
Sbjct  110  WKLIKPFLDPKTREKIVFLKNSNEEELEKYIPPEQLPKEYGG  151



Lambda      K        H        a         alpha
   0.316    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00022317

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain                     121     3e-36


>CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain.  
Length=151

 Score = 121 bits (307),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 43/129 (33%), Positives = 75/129 (58%), Gaps = 8/129 (6%)

Query  6    TAERMLQNLVCEYEKLADPRLPACSRKAGKLLETCCSIMDLKGVGITSVPS-VYGYVRQA  64
            + E +++ LV   E+                +E    I+DLKG+ ++++       +++ 
Sbjct  30   SEEELVRFLVLVLERALLLMPEGQ-------VEGLTVIIDLKGLSLSNMDWWSISLLKKI  82

Query  65   SAISQNYYPERLGKLYLINAPWGFSSVFNVVKGFLDPVTVQKIHVLGSNYKKELLEQIPA  124
              I Q+ YPERLGK+ ++NAPW F++++ ++K FLDP T +KI  L ++ ++EL + IP 
Sbjct  83   IKILQDNYPERLGKILIVNAPWIFNTIWKLIKPFLDPKTREKIVFLKNSNEEELEKYIPP  142

Query  125  ENLPVEFGG  133
            E LP E+GG
Sbjct  143  EQLPKEYGG  151



Lambda      K        H        a         alpha
   0.315    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00022319

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain                     121     3e-36


>CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain.  
Length=151

 Score = 121 bits (307),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 43/129 (33%), Positives = 75/129 (58%), Gaps = 8/129 (6%)

Query  6    TAERMLQNLVCEYEKLADPRLPACSRKAGKLLETCCSIMDLKGVGITSVPS-VYGYVRQA  64
            + E +++ LV   E+                +E    I+DLKG+ ++++       +++ 
Sbjct  30   SEEELVRFLVLVLERALLLMPEGQ-------VEGLTVIIDLKGLSLSNMDWWSISLLKKI  82

Query  65   SAISQNYYPERLGKLYLINAPWGFSSVFNVVKGFLDPVTVQKIHVLGSNYKKELLEQIPA  124
              I Q+ YPERLGK+ ++NAPW F++++ ++K FLDP T +KI  L ++ ++EL + IP 
Sbjct  83   IKILQDNYPERLGKILIVNAPWIFNTIWKLIKPFLDPKTREKIVFLKNSNEEELEKYIPP  142

Query  125  ENLPVEFGG  133
            E LP E+GG
Sbjct  143  EQLPKEYGG  151



Lambda      K        H        a         alpha
   0.315    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00027073

Length=901


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1157024284


Query= TCONS_00022320

Length=367


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00022321

Length=901


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1157024284


Query= TCONS_00027074

Length=480


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598144560


Query= TCONS_00022323

Length=832


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1057973818


Query= TCONS_00027075

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396835 pfam02450, LCAT, Lecithin:cholesterol acyltransferase....  325     4e-107


>CDD:396835 pfam02450, LCAT, Lecithin:cholesterol acyltransferase.  Lecithin:cholesterol 
acyltransferase (LCAT) is involved in extracellular 
metabolism of plasma lipoproteins, including cholesterol.
Length=383

 Score = 325 bits (835),  Expect = 4e-107, Method: Composition-based stats.
 Identities = 141/414 (34%), Positives = 208/414 (50%), Gaps = 54/414 (13%)

Query  164  RLWGSWSMMRALVMDKAEWKNHIMLDRETGL--DPPGIKLRAAQGFDATDFF----ITGY  217
            R+W   +M+  LV+D      H++L+  TGL  DPPG+K+RAAQGF++ ++     + GY
Sbjct  1    RIWLDLNMLLPLVVDCWIDNTHVVLNPSTGLQPDPPGVKIRAAQGFESVEYLDYSKLAGY  60

Query  218  WIWNKILENLATIGYDPTNAFTAA-YDWRLSYLNLEVRDQYFSRLKSYIETAVLVKGEKV  276
            WIW+K+++NL  IGY+      AA YDWRLS   LE RD+YF +LK  IE A  + G+KV
Sbjct  61   WIWHKVVQNLVNIGYERNKTVRAAPYDWRLS---LEERDKYFHKLKQLIEEAHKLYGKKV  117

Query  277  TLASHSMGSQVVLYFFKWVEHPDHGKGGRDWVNKHIANWINISGCMLGAVKGLTAVLSGE  336
             L  HSMG+ +VLYF  WV           W ++HI  +I++   +LG+ K + A+ SG 
Sbjct  118  VLIGHSMGNLLVLYFLLWVV-------AEAWKDQHIDAFISLGAPLLGSPKAVRALASGY  170

Query  337  MRDTAQLNAFAVYGLEKFLSKEERAEIFRAMPGISSMLPKGGEAVWGNSTWAPDDQ----  392
                  L+   + GL++  S                MLPKG   +W +  W  D+     
Sbjct  171  NFGIPILSEITLRGLQRSFSS------------SPWMLPKGKYVLWSDVAWPSDEIFIQT  218

Query  393  PGQVMTFGNLLNFRETNSSWTRKNLTTTESLTYLLDQSEDWYRHQVLSSYSHGVAHTTKE  452
            P    T+G L+ F               ++L + L+  + WY  +V      G+ +   E
Sbjct  219  PSINYTYGALVRF-------FDDETINVDALGFTLNTLDGWYMWKVSRDLDGGLPYLEAE  271

Query  453  VEANENDPRTWLNPLETRLPLAPDMKIYCFYGVGKPTERSYFYQEERDPLVNLNVSIDTT  512
            +  N+     W+NP ET LP+AP +K+YC YGVG PTER Y+Y   +     +   ID  
Sbjct  272  LAKNDIK--YWVNPEETPLPVAPGVKVYCIYGVGLPTERGYYYTPGKTS-SPILSRIDYE  328

Query  513  VTTPDGVDRGVLMGEGDGTVNLLSTGYMCAKGWHIKRYNPAGVKIKVFEMPHEP  566
                     G++ G+GDGTV   S   +C   W   +  PAG  + V E+ H  
Sbjct  329  ------DPVGIVSGDGDGTVPKRSLE-LCKN-W---QGLPAGQNVTVHELKHGS  371



Lambda      K        H        a         alpha
   0.319    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 750202856


Query= TCONS_00022325

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00022326

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00027076

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460408 pfam01988, VIT1, VIT family. This family includes the ...  95.6    3e-26


>CDD:460408 pfam01988, VIT1, VIT family.  This family includes the vacuolar 
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron 
transporter VIT1.
Length=212

 Score = 95.6 bits (239),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 30/108 (28%), Positives = 45/108 (42%), Gaps = 10/108 (9%)

Query  5    FLMNFHHTLPEPSGSRALICALTIALGYFIGGFVPLLPYFFVGPHDAFIALRWSIATMAI  64
             +M     +           ALT  L + +GG +PLLPY F+       AL  SI    +
Sbjct  115  AMMREELGIDPSEALANPKAALTSFLSFALGGLIPLLPYLFL--PSGIPALIVSIILTLL  172

Query  65   ALFLFGYGKTCFVSGWRGRQNIRRGFIGGMQMVLVGGVAAGSAMGLVK  112
            ALFL G  K         R          ++M+L+G +AA +  G+ +
Sbjct  173  ALFLLGAVKARLGGASPLR--------SALRMLLIGALAAAATYGIGR  212



Lambda      K        H        a         alpha
   0.331    0.147    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00022327

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460408 pfam01988, VIT1, VIT family. This family includes the ...  95.6    3e-26


>CDD:460408 pfam01988, VIT1, VIT family.  This family includes the vacuolar 
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron 
transporter VIT1.
Length=212

 Score = 95.6 bits (239),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 30/108 (28%), Positives = 45/108 (42%), Gaps = 10/108 (9%)

Query  5    FLMNFHHTLPEPSGSRALICALTIALGYFIGGFVPLLPYFFVGPHDAFIALRWSIATMAI  64
             +M     +           ALT  L + +GG +PLLPY F+       AL  SI    +
Sbjct  115  AMMREELGIDPSEALANPKAALTSFLSFALGGLIPLLPYLFL--PSGIPALIVSIILTLL  172

Query  65   ALFLFGYGKTCFVSGWRGRQNIRRGFIGGMQMVLVGGVAAGSAMGLVK  112
            ALFL G  K         R          ++M+L+G +AA +  G+ +
Sbjct  173  ALFLLGAVKARLGGASPLR--------SALRMLLIGALAAAATYGIGR  212



Lambda      K        H        a         alpha
   0.331    0.147    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00022328

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460408 pfam01988, VIT1, VIT family. This family includes the ...  95.6    3e-26


>CDD:460408 pfam01988, VIT1, VIT family.  This family includes the vacuolar 
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron 
transporter VIT1.
Length=212

 Score = 95.6 bits (239),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 30/108 (28%), Positives = 45/108 (42%), Gaps = 10/108 (9%)

Query  5    FLMNFHHTLPEPSGSRALICALTIALGYFIGGFVPLLPYFFVGPHDAFIALRWSIATMAI  64
             +M     +           ALT  L + +GG +PLLPY F+       AL  SI    +
Sbjct  115  AMMREELGIDPSEALANPKAALTSFLSFALGGLIPLLPYLFL--PSGIPALIVSIILTLL  172

Query  65   ALFLFGYGKTCFVSGWRGRQNIRRGFIGGMQMVLVGGVAAGSAMGLVK  112
            ALFL G  K         R          ++M+L+G +AA +  G+ +
Sbjct  173  ALFLLGAVKARLGGASPLR--------SALRMLLIGALAAAATYGIGR  212



Lambda      K        H        a         alpha
   0.331    0.147    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00022329

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460408 pfam01988, VIT1, VIT family. This family includes the ...  95.6    3e-26


>CDD:460408 pfam01988, VIT1, VIT family.  This family includes the vacuolar 
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron 
transporter VIT1.
Length=212

 Score = 95.6 bits (239),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 30/108 (28%), Positives = 45/108 (42%), Gaps = 10/108 (9%)

Query  5    FLMNFHHTLPEPSGSRALICALTIALGYFIGGFVPLLPYFFVGPHDAFIALRWSIATMAI  64
             +M     +           ALT  L + +GG +PLLPY F+       AL  SI    +
Sbjct  115  AMMREELGIDPSEALANPKAALTSFLSFALGGLIPLLPYLFL--PSGIPALIVSIILTLL  172

Query  65   ALFLFGYGKTCFVSGWRGRQNIRRGFIGGMQMVLVGGVAAGSAMGLVK  112
            ALFL G  K         R          ++M+L+G +AA +  G+ +
Sbjct  173  ALFLLGAVKARLGGASPLR--------SALRMLLIGALAAAATYGIGR  212



Lambda      K        H        a         alpha
   0.331    0.147    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00022330

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460408 pfam01988, VIT1, VIT family. This family includes the ...  95.6    3e-26


>CDD:460408 pfam01988, VIT1, VIT family.  This family includes the vacuolar 
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron 
transporter VIT1.
Length=212

 Score = 95.6 bits (239),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 30/108 (28%), Positives = 45/108 (42%), Gaps = 10/108 (9%)

Query  5    FLMNFHHTLPEPSGSRALICALTIALGYFIGGFVPLLPYFFVGPHDAFIALRWSIATMAI  64
             +M     +           ALT  L + +GG +PLLPY F+       AL  SI    +
Sbjct  115  AMMREELGIDPSEALANPKAALTSFLSFALGGLIPLLPYLFL--PSGIPALIVSIILTLL  172

Query  65   ALFLFGYGKTCFVSGWRGRQNIRRGFIGGMQMVLVGGVAAGSAMGLVK  112
            ALFL G  K         R          ++M+L+G +AA +  G+ +
Sbjct  173  ALFLLGAVKARLGGASPLR--------SALRMLLIGALAAAATYGIGR  212



Lambda      K        H        a         alpha
   0.331    0.147    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00027077

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00022331

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460408 pfam01988, VIT1, VIT family. This family includes the ...  95.6    3e-26


>CDD:460408 pfam01988, VIT1, VIT family.  This family includes the vacuolar 
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron 
transporter VIT1.
Length=212

 Score = 95.6 bits (239),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 30/108 (28%), Positives = 45/108 (42%), Gaps = 10/108 (9%)

Query  5    FLMNFHHTLPEPSGSRALICALTIALGYFIGGFVPLLPYFFVGPHDAFIALRWSIATMAI  64
             +M     +           ALT  L + +GG +PLLPY F+       AL  SI    +
Sbjct  115  AMMREELGIDPSEALANPKAALTSFLSFALGGLIPLLPYLFL--PSGIPALIVSIILTLL  172

Query  65   ALFLFGYGKTCFVSGWRGRQNIRRGFIGGMQMVLVGGVAAGSAMGLVK  112
            ALFL G  K         R          ++M+L+G +AA +  G+ +
Sbjct  173  ALFLLGAVKARLGGASPLR--------SALRMLLIGALAAAATYGIGR  212



Lambda      K        H        a         alpha
   0.331    0.147    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00027078

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00022332

Length=437


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.119    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00027079

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00022333

Length=437


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.119    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00022334

Length=437


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.119    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00027080

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00022335

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00027081

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00027082

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00022336

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.493    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00027083

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00027084

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00022337

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  96.1    4e-25


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 96.1 bits (240),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 50/85 (59%), Gaps = 3/85 (4%)

Query  313  IKYPAGSTIIEEGAPGDAFYLLESGEAEAFKKDVEG---PVKSYRRGDFFGELALLDDKP  369
              Y AG  I  EG P D+ Y++ SG+ + ++   +G    +     GDFFGELALL  +P
Sbjct  2    RSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEP  61

Query  370  RAASVVAKTDVKVARLGRDGFKRLL  394
            R+A+VVA TD ++  + R+ F  LL
Sbjct  62   RSATVVALTDSELLVIPREDFLELL  86


 Score = 74.2 bits (183),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 31/98 (32%), Positives = 46/98 (47%), Gaps = 9/98 (9%)

Query  180  EKPIPAKDIKVISQGDAGDYFYIVENGHFDVYINPAGSVQPGPDGIGNKVSTIGPGGSFG  239
             +   A ++ +  +GD  D  YIV +G   VY           DG    ++ +GPG  FG
Sbjct  1    LRSYKAGEV-IFREGDPADSLYIVLSGKVKVYRT-------LEDGREQILAVLGPGDFFG  52

Query  240  ELALMYNAPRAATIVSADPKSTLWALDRITFRRILMDS  277
            ELAL+   PR+AT+V+    S L  + R  F  +L   
Sbjct  53   ELALLGGEPRSATVVALTD-SELLVIPREDFLELLERD  89



Lambda      K        H        a         alpha
   0.313    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00022338

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  96.1    4e-25


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 96.1 bits (240),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 50/85 (59%), Gaps = 3/85 (4%)

Query  313  IKYPAGSTIIEEGAPGDAFYLLESGEAEAFKKDVEG---PVKSYRRGDFFGELALLDDKP  369
              Y AG  I  EG P D+ Y++ SG+ + ++   +G    +     GDFFGELALL  +P
Sbjct  2    RSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEP  61

Query  370  RAASVVAKTDVKVARLGRDGFKRLL  394
            R+A+VVA TD ++  + R+ F  LL
Sbjct  62   RSATVVALTDSELLVIPREDFLELL  86


 Score = 74.2 bits (183),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 31/98 (32%), Positives = 46/98 (47%), Gaps = 9/98 (9%)

Query  180  EKPIPAKDIKVISQGDAGDYFYIVENGHFDVYINPAGSVQPGPDGIGNKVSTIGPGGSFG  239
             +   A ++ +  +GD  D  YIV +G   VY           DG    ++ +GPG  FG
Sbjct  1    LRSYKAGEV-IFREGDPADSLYIVLSGKVKVYRT-------LEDGREQILAVLGPGDFFG  52

Query  240  ELALMYNAPRAATIVSADPKSTLWALDRITFRRILMDS  277
            ELAL+   PR+AT+V+    S L  + R  F  +L   
Sbjct  53   ELALLGGEPRSATVVALTD-SELLVIPREDFLELLERD  89



Lambda      K        H        a         alpha
   0.313    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00022339

Length=1160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459732 pfam00250, Forkhead, Forkhead domain                       80.6    6e-19


>CDD:459732 pfam00250, Forkhead, Forkhead domain.  
Length=86

 Score = 80.6 bits (200),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 31/84 (37%), Positives = 45/84 (54%), Gaps = 8/84 (10%)

Query  780  KPPYNYAVLIFDALTEAGT-PMTLKQIYRALKLKYPYFRFKCETEGWTSSVRHNLNGNSH  838
            KPPY+YA LI  A+  +    +TL +IY  +   +PY+R     +GW +S+RHNL+ N  
Sbjct  1    KPPYSYAALIAMAILSSPEKKLTLSEIYEWISENFPYYRTA--DKGWQNSIRHNLSLNKC  58

Query  839  LFMHAERD----GKGWSWQLRPGA  858
             F+   R     GKG  W + P  
Sbjct  59   -FVKVPRPKDEPGKGSYWTIDPEY  81



Lambda      K        H        a         alpha
   0.309    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1484200994


Query= TCONS_00027085

Length=1160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459732 pfam00250, Forkhead, Forkhead domain                       80.6    6e-19


>CDD:459732 pfam00250, Forkhead, Forkhead domain.  
Length=86

 Score = 80.6 bits (200),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 31/84 (37%), Positives = 45/84 (54%), Gaps = 8/84 (10%)

Query  780  KPPYNYAVLIFDALTEAGT-PMTLKQIYRALKLKYPYFRFKCETEGWTSSVRHNLNGNSH  838
            KPPY+YA LI  A+  +    +TL +IY  +   +PY+R     +GW +S+RHNL+ N  
Sbjct  1    KPPYSYAALIAMAILSSPEKKLTLSEIYEWISENFPYYRTA--DKGWQNSIRHNLSLNKC  58

Query  839  LFMHAERD----GKGWSWQLRPGA  858
             F+   R     GKG  W + P  
Sbjct  59   -FVKVPRPKDEPGKGSYWTIDPEY  81



Lambda      K        H        a         alpha
   0.309    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0872    0.140     1.90     42.6     43.6 

Effective search space used: 1484200994


Query= TCONS_00022340

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00027086

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00022342

Length=299


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00022343

Length=475


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 590476040


Query= TCONS_00022344

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00022345

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  112     2e-30


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 112 bits (282),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 56/217 (26%), Positives = 83/217 (38%), Gaps = 29/217 (13%)

Query  2    IILIRHAQSEGNKNREIHQTIPDHRVQLTPEGHRQAREAGSKLRALLRPDDTIHFFTSPY  61
            + L+RH ++E N      Q   D    LT  G  QA     +L     P D I  ++SP 
Sbjct  1    LYLVRHGETEWNLEG-RFQGRTD--SPLTELGREQAEALAERLAG--EPFDAI--YSSPL  53

Query  62   RRTRETTEGILESLTSDSPSPSPFPRHTIKVYEEPRLREQDFGNFQ--PCSAEMERM--W  117
            +R R+T E I E                + V  +PRLRE DFG+++        ER    
Sbjct  54   KRARQTAEIIAE-------------ALGLPVEIDPRLREIDFGDWEGLTFEEIAERYPEE  100

Query  118  LERADYGHFFYRIPNGESAADAYDRISGFNESLWRLFGEDDFASVCVLVTHGLMTRVFLM  177
             +        YR P GES AD   R+    E L             ++V+HG + R  L 
Sbjct  101  YDAWLADPADYRPPGGESLADVRARVRAALEELAARHPGKTV----LVVSHGGVIRALLA  156

Query  178  KWYHWSVEYFEDLRNINHCEFVIMKLNPDNGKYVLQN  214
                  +E       +++    I++ +      VL N
Sbjct  157  HLLGLPLEALRRFP-LDNASLSILEFDGGGWVLVLLN  192



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00027087

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427729 pfam04124, Dor1, Dor1-like family. Dor1 is involved in...  179     4e-53


>CDD:427729 pfam04124, Dor1, Dor1-like family.  Dor1 is involved in vesicle 
targeting to the yeast Golgi apparatus and complexes with 
a number of other trafficking proteins, which include Sec34 
and Sec35.
Length=315

 Score = 179 bits (456),  Expect = 4e-53, Method: Composition-based stats.
 Identities = 114/400 (29%), Positives = 174/400 (44%), Gaps = 86/400 (22%)

Query  35   LNRLSTLSLEALETSEPQSLAQSSHSTLLSLQALSNRSHKAFITSAGNLSQLRISIPQLT  94
            L  LST  LE LE  EP+ LA+ +   L  +Q L+ +++K FI +A     +R  +  + 
Sbjct  1    LRDLSTKPLEELEK-EPELLAEEAAEILAQIQDLARKNYKTFIDAARATIAIRQLLGDIA  59

Query  95   CNTQNLRDAIPKLDEEAVQFSTKYSRAAENPSLERRKKVMQLARNVDRLADILELPSLLS  154
             + + L D IPKL    V+F             E R+    L +N D+L D+LELP L+ 
Sbjct  60   KSLEQLVDDIPKLTSSCVRFLEDAKE-----ISETRRLNNLLLQNHDQLLDLLELPQLMD  114

Query  155  TAVSSAATSSVAAGGTSFSTT-YSSALDLYAHIKRLQTLYADSPLVKEVASQAEDAMKEM  213
                           T   T  YS AL+L A+  RL++ +  SP+++E+A+Q E+AM+ M
Sbjct  115  ---------------TCIRTGYYSEALELAAYATRLRSRFPGSPVIQEIAAQVEEAMQTM  159

Query  214  TTNLIAGLRTQNLRLAAAMRMVGWLRRVAPELEGFHSDGGTGTGEGALGALFLVCRLANL  273
             + LI  LRT  L+L + +++VG+LRR+ P              E  L   FL  R A L
Sbjct  160  LSQLIQQLRT-PLQLPSCLKVVGYLRRMPP------------FTENELRLKFLQARDAWL  206

Query  274  VSTLEALDPLRELADQETQRRTQNTDQKEGTSNSSWSHGHQTEKFLKRYIEIFREQSFAI  333
             S L ALD                        N         EK+L + IE+ R   F I
Sbjct  207  ESILTALD----------------------DDN--------PEKYLLKTIEVCRVNLFDI  236

Query  334  VSLYKNIFTPDQAESESVIAGLRGIDSRVKTNLSQPTRPDDPLQCLPPALATFPMHLVQL  393
            ++ Y+ IF  D+   ++           +                    L ++    ++ 
Sbjct  237  LTQYRAIFPEDEVVLKNAWGSWNNNGGSI--------------------LESWVEMKIKR  276

Query  394  LTDTLRTYLPNVQDKSSRESLLTQVLYCAASLGRLGGDFS  433
              + LR  L  V+   S  S+L Q++Y A S GR+G DF 
Sbjct  277  FLEVLREDL-YVKLGVSLSSVLGQLMYFALSFGRVGADFR  315



Lambda      K        H        a         alpha
   0.315    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00022346

Length=247


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00022348

Length=247


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00022349

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462913 pfam09816, EAF, RNA polymerase II transcription elonga...  98.1    1e-25


>CDD:462913 pfam09816, EAF, RNA polymerase II transcription elongation factor. 
 Members of this family act as transcriptional transactivators 
of ELL and ELL2 elongation activities. Eaf proteins 
form a stable heterodimer complex with ELL proteins to facilitate 
the binding of RNA polymerase II to activate transcription 
elongation. The N-terminus of approx 120 residues is globular 
and highly conserved.
Length=101

 Score = 98.1 bits (245),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 17/116 (15%)

Query  21   IILGEQLAGGDSKPQSRLINIQYNYKTKSASSQQRTHITRSTQCPD--LYTLTITDKAPN  78
            I+LG+ LA       S    I+YN+K  S  + +   +T S+   D   Y L I D    
Sbjct  1    IVLGDSLANLGKSSSSEFTTIRYNFKPASVDASKPGTLTVSSSDNDEVSYELPINDG---  57

Query  79   ADNSVITYSYIGSVDPEHATSESRERNLVLVFDPDRKVFVLESIATQLNFNLRSAP  134
                  TY + GS DP       +E++ VL+FDP+ K FVLE + + L FNL  AP
Sbjct  58   ------TYVFEGSRDP------YKEKDCVLIFDPETKTFVLERLDSTLRFNLTRAP  101



Lambda      K        H        a         alpha
   0.304    0.124    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00022350

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462913 pfam09816, EAF, RNA polymerase II transcription elonga...  98.1    1e-25


>CDD:462913 pfam09816, EAF, RNA polymerase II transcription elongation factor. 
 Members of this family act as transcriptional transactivators 
of ELL and ELL2 elongation activities. Eaf proteins 
form a stable heterodimer complex with ELL proteins to facilitate 
the binding of RNA polymerase II to activate transcription 
elongation. The N-terminus of approx 120 residues is globular 
and highly conserved.
Length=101

 Score = 98.1 bits (245),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 17/116 (15%)

Query  21   IILGEQLAGGDSKPQSRLINIQYNYKTKSASSQQRTHITRSTQCPD--LYTLTITDKAPN  78
            I+LG+ LA       S    I+YN+K  S  + +   +T S+   D   Y L I D    
Sbjct  1    IVLGDSLANLGKSSSSEFTTIRYNFKPASVDASKPGTLTVSSSDNDEVSYELPINDG---  57

Query  79   ADNSVITYSYIGSVDPEHATSESRERNLVLVFDPDRKVFVLESIATQLNFNLRSAP  134
                  TY + GS DP       +E++ VL+FDP+ K FVLE + + L FNL  AP
Sbjct  58   ------TYVFEGSRDP------YKEKDCVLIFDPETKTFVLERLDSTLRFNLTRAP  101



Lambda      K        H        a         alpha
   0.304    0.124    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00022352

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain. Cyclin...  64.5    4e-13


>CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain.  Cyclins regulate 
cyclin dependent kinases (CDKs). Cyclin-0 (CCNO) is a Uracil-DNA 
glycosylase that is related to other cyclins. Cyclins 
contain two domains of similar all-alpha fold, of which 
this family corresponds with the N-terminal domain.
Length=127

 Score = 64.5 bits (158),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 32/115 (28%), Positives = 45/115 (39%), Gaps = 24/115 (21%)

Query  59   VNFITQVGIMLKLPQLTLATAAVYLHRFFMRYSMVDIPQRPGMHPYPIAATALFLATKVE  118
            ++++ +V    KL   TL  A  YL RF    S   +P+        +  T LF+A K E
Sbjct  35   IDWLVEVHEKFKLLPETLYLAVNYLDRF---LSKKSVPKN---KLQLVGVTCLFIAAKYE  88

Query  119  E-NVRRMRELVVACCRVAQKQPNLVVDEQSKEFWKWRDTILHHEDLLLEALCFDL  172
            E     + +LV                         R+ IL  E L+LE L FDL
Sbjct  89   EIYPPTVEDLVYITDNAYT-----------------REEILRMERLILETLNFDL  126



Lambda      K        H        a         alpha
   0.316    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 697897876


Query= TCONS_00022353

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.339    0.146    0.525    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00022354

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.339    0.146    0.525    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00027088

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461576 pfam05187, ETF_QO, Electron transfer flavoprotein-ubiq...  144     1e-42


>CDD:461576 pfam05187, ETF_QO, Electron transfer flavoprotein-ubiquinone 
oxidoreductase, 4Fe-4S.  Electron-transfer flavoprotein-ubiquinone 
oxidoreductase (ETF-QO) in the inner mitochondrial membrane 
accepts electrons from electron-transfer flavoprotein 
which is located in the mitochondrial matrix and reduces ubiquinone 
in the mitochondrial membrane. The two redox centers 
in the protein, FAD and a [4Fe4S] cluster, are present in 
a 64-kDa monomer.
Length=104

 Score = 144 bits (366),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 45/74 (61%), Positives = 52/74 (70%), Gaps = 1/74 (1%)

Query  385  GVISFDILTSVSRTGTNHEEDQPVHLQVADWDKHTDVAWPKYRGIENRFCPAGVYEYVED  444
            GV++FD LTSV  +GTNHEEDQP HL++ D +    V  PKY G E R+CPAGVYEYVED
Sbjct  1    GVLTFDRLTSVYLSGTNHEEDQPCHLKLKDPEVPIKVNLPKYAGPEQRYCPAGVYEYVED  60

Query  445  PSKQHGVRFQINAQ  458
                 G R QINAQ
Sbjct  61   EEPG-GPRLQINAQ  73



Lambda      K        H        a         alpha
   0.317    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00022355

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00027089

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-bi...  136     1e-43


>CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, 
TBP).  
Length=84

 Score = 136 bits (345),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 55/84 (65%), Gaps = 0/84 (0%)

Query  51   DFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIV  110
            D KIQN+V S D+ FPI LE LA +      YEPE FPGL+YR+ +PK+  LIF SGKIV
Sbjct  1    DIKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIV  60

Query  111  LTGAKVREEIYQAFELIYPVLSDF  134
            +TGAK  E+  +A   I P+L   
Sbjct  61   ITGAKSEEDAKKAIRKIAPILQKL  84


 Score = 78.6 bits (195),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 30/43 (70%), Positives = 37/43 (86%), Gaps = 0/43 (0%)

Query  1   MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKL  43
            R+REPK TALIF+SGK+V+TGAKSE+D+K A RK A I+QKL
Sbjct  42  YRLREPKVTALIFSSGKIVITGAKSEEDAKKAIRKIAPILQKL  84



Lambda      K        H        a         alpha
   0.325    0.141    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00022358

Length=507


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.125    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00022357

Length=507


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.125    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00022356

Length=507


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.125    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00027090

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-bi...  134     2e-42


>CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, 
TBP).  
Length=84

 Score = 134 bits (339),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 44/82 (54%), Positives = 55/82 (67%), Gaps = 0/82 (0%)

Query  51   DFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIV  110
            D KIQN+V S D+ FPI LE LA +      YEPE FPGL+YR+ +PK+  LIF SGKIV
Sbjct  1    DIKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIV  60

Query  111  LTGAKVREEIYQAFELIYPVLS  132
            +TGAK  E+  +A   I P+L 
Sbjct  61   ITGAKSEEDAKKAIRKIAPILQ  82


 Score = 78.2 bits (194),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 30/43 (70%), Positives = 37/43 (86%), Gaps = 0/43 (0%)

Query  1   MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKL  43
            R+REPK TALIF+SGK+V+TGAKSE+D+K A RK A I+QKL
Sbjct  42  YRLREPKVTALIFSSGKIVITGAKSEEDAKKAIRKIAPILQKL  84



Lambda      K        H        a         alpha
   0.326    0.142    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00022364

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-bi...  136     1e-43


>CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, 
TBP).  
Length=84

 Score = 136 bits (345),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 55/84 (65%), Gaps = 0/84 (0%)

Query  51   DFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIV  110
            D KIQN+V S D+ FPI LE LA +      YEPE FPGL+YR+ +PK+  LIF SGKIV
Sbjct  1    DIKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIV  60

Query  111  LTGAKVREEIYQAFELIYPVLSDF  134
            +TGAK  E+  +A   I P+L   
Sbjct  61   ITGAKSEEDAKKAIRKIAPILQKL  84


 Score = 78.6 bits (195),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 30/43 (70%), Positives = 37/43 (86%), Gaps = 0/43 (0%)

Query  1   MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKL  43
            R+REPK TALIF+SGK+V+TGAKSE+D+K A RK A I+QKL
Sbjct  42  YRLREPKVTALIFSSGKIVITGAKSEEDAKKAIRKIAPILQKL  84



Lambda      K        H        a         alpha
   0.325    0.141    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00027091

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-bi...  136     1e-43


>CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, 
TBP).  
Length=84

 Score = 136 bits (345),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 55/84 (65%), Gaps = 0/84 (0%)

Query  51   DFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIV  110
            D KIQN+V S D+ FPI LE LA +      YEPE FPGL+YR+ +PK+  LIF SGKIV
Sbjct  1    DIKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIV  60

Query  111  LTGAKVREEIYQAFELIYPVLSDF  134
            +TGAK  E+  +A   I P+L   
Sbjct  61   ITGAKSEEDAKKAIRKIAPILQKL  84


 Score = 78.6 bits (195),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 30/43 (70%), Positives = 37/43 (86%), Gaps = 0/43 (0%)

Query  1   MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKL  43
            R+REPK TALIF+SGK+V+TGAKSE+D+K A RK A I+QKL
Sbjct  42  YRLREPKVTALIFSSGKIVITGAKSEEDAKKAIRKIAPILQKL  84



Lambda      K        H        a         alpha
   0.325    0.141    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00027092

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-bi...  139     7e-43


>CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, 
TBP).  
Length=84

 Score = 139 bits (354),  Expect = 7e-43, Method: Composition-based stats.
 Identities = 44/82 (54%), Positives = 55/82 (67%), Gaps = 0/82 (0%)

Query  178  DFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIV  237
            D KIQN+V S D+ FPI LE LA +      YEPE FPGL+YR+ +PK+  LIF SGKIV
Sbjct  1    DIKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIV  60

Query  238  LTGAKVREEIYQAFELIYPVLS  259
            +TGAK  E+  +A   I P+L 
Sbjct  61   ITGAKSEEDAKKAIRKIAPILQ  82


 Score = 139 bits (352),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 45/83 (54%), Positives = 62/83 (75%), Gaps = 1/83 (1%)

Query  89   PTLQNIVATVNLDCRLDLKTIAL-HARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVV  147
              +QN+VA+ +L   +DL+ +AL    N EY P+RF  ++ R+REPK TALIF+SGK+V+
Sbjct  2    IKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIVI  61

Query  148  TGAKSEDDSKLASRKYARIIQKL  170
            TGAKSE+D+K A RK A I+QKL
Sbjct  62   TGAKSEEDAKKAIRKIAPILQKL  84



Lambda      K        H        a         alpha
   0.319    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00027094

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-bi...  134     2e-42


>CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, 
TBP).  
Length=84

 Score = 134 bits (339),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 44/82 (54%), Positives = 55/82 (67%), Gaps = 0/82 (0%)

Query  51   DFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIV  110
            D KIQN+V S D+ FPI LE LA +      YEPE FPGL+YR+ +PK+  LIF SGKIV
Sbjct  1    DIKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIV  60

Query  111  LTGAKVREEIYQAFELIYPVLS  132
            +TGAK  E+  +A   I P+L 
Sbjct  61   ITGAKSEEDAKKAIRKIAPILQ  82


 Score = 78.2 bits (194),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 30/43 (70%), Positives = 37/43 (86%), Gaps = 0/43 (0%)

Query  1   MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKL  43
            R+REPK TALIF+SGK+V+TGAKSE+D+K A RK A I+QKL
Sbjct  42  YRLREPKVTALIFSSGKIVITGAKSEEDAKKAIRKIAPILQKL  84



Lambda      K        H        a         alpha
   0.326    0.142    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00027095

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-bi...  142     3e-44


>CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, 
TBP).  
Length=84

 Score = 142 bits (361),  Expect = 3e-44, Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 55/84 (65%), Gaps = 0/84 (0%)

Query  178  DFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIV  237
            D KIQN+V S D+ FPI LE LA +      YEPE FPGL+YR+ +PK+  LIF SGKIV
Sbjct  1    DIKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIV  60

Query  238  LTGAKVREEIYQAFELIYPVLSDF  261
            +TGAK  E+  +A   I P+L   
Sbjct  61   ITGAKSEEDAKKAIRKIAPILQKL  84


 Score = 139 bits (353),  Expect = 5e-43, Method: Composition-based stats.
 Identities = 45/83 (54%), Positives = 62/83 (75%), Gaps = 1/83 (1%)

Query  89   PTLQNIVATVNLDCRLDLKTIAL-HARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVV  147
              +QN+VA+ +L   +DL+ +AL    N EY P+RF  ++ R+REPK TALIF+SGK+V+
Sbjct  2    IKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIVI  61

Query  148  TGAKSEDDSKLASRKYARIIQKL  170
            TGAKSE+D+K A RK A I+QKL
Sbjct  62   TGAKSEEDAKKAIRKIAPILQKL  84



Lambda      K        H        a         alpha
   0.317    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00022360

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-bi...  134     2e-42


>CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, 
TBP).  
Length=84

 Score = 134 bits (339),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 44/82 (54%), Positives = 55/82 (67%), Gaps = 0/82 (0%)

Query  51   DFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIV  110
            D KIQN+V S D+ FPI LE LA +      YEPE FPGL+YR+ +PK+  LIF SGKIV
Sbjct  1    DIKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIV  60

Query  111  LTGAKVREEIYQAFELIYPVLS  132
            +TGAK  E+  +A   I P+L 
Sbjct  61   ITGAKSEEDAKKAIRKIAPILQ  82


 Score = 78.2 bits (194),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 30/43 (70%), Positives = 37/43 (86%), Gaps = 0/43 (0%)

Query  1   MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKL  43
            R+REPK TALIF+SGK+V+TGAKSE+D+K A RK A I+QKL
Sbjct  42  YRLREPKVTALIFSSGKIVITGAKSEEDAKKAIRKIAPILQKL  84



Lambda      K        H        a         alpha
   0.326    0.142    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00022361

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-bi...  134     2e-42


>CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, 
TBP).  
Length=84

 Score = 134 bits (339),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 44/82 (54%), Positives = 55/82 (67%), Gaps = 0/82 (0%)

Query  51   DFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIV  110
            D KIQN+V S D+ FPI LE LA +      YEPE FPGL+YR+ +PK+  LIF SGKIV
Sbjct  1    DIKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIV  60

Query  111  LTGAKVREEIYQAFELIYPVLS  132
            +TGAK  E+  +A   I P+L 
Sbjct  61   ITGAKSEEDAKKAIRKIAPILQ  82


 Score = 78.2 bits (194),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 30/43 (70%), Positives = 37/43 (86%), Gaps = 0/43 (0%)

Query  1   MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKL  43
            R+REPK TALIF+SGK+V+TGAKSE+D+K A RK A I+QKL
Sbjct  42  YRLREPKVTALIFSSGKIVITGAKSEEDAKKAIRKIAPILQKL  84



Lambda      K        H        a         alpha
   0.326    0.142    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00022363

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-bi...  142     3e-44


>CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, 
TBP).  
Length=84

 Score = 142 bits (361),  Expect = 3e-44, Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 55/84 (65%), Gaps = 0/84 (0%)

Query  178  DFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIV  237
            D KIQN+V S D+ FPI LE LA +      YEPE FPGL+YR+ +PK+  LIF SGKIV
Sbjct  1    DIKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIV  60

Query  238  LTGAKVREEIYQAFELIYPVLSDF  261
            +TGAK  E+  +A   I P+L   
Sbjct  61   ITGAKSEEDAKKAIRKIAPILQKL  84


 Score = 139 bits (353),  Expect = 5e-43, Method: Composition-based stats.
 Identities = 45/83 (54%), Positives = 62/83 (75%), Gaps = 1/83 (1%)

Query  89   PTLQNIVATVNLDCRLDLKTIAL-HARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVV  147
              +QN+VA+ +L   +DL+ +AL    N EY P+RF  ++ R+REPK TALIF+SGK+V+
Sbjct  2    IKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIVI  61

Query  148  TGAKSEDDSKLASRKYARIIQKL  170
            TGAKSE+D+K A RK A I+QKL
Sbjct  62   TGAKSEEDAKKAIRKIAPILQKL  84



Lambda      K        H        a         alpha
   0.317    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00022362

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-bi...  136     1e-43


>CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, 
TBP).  
Length=84

 Score = 136 bits (345),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 55/84 (65%), Gaps = 0/84 (0%)

Query  51   DFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIV  110
            D KIQN+V S D+ FPI LE LA +      YEPE FPGL+YR+ +PK+  LIF SGKIV
Sbjct  1    DIKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIV  60

Query  111  LTGAKVREEIYQAFELIYPVLSDF  134
            +TGAK  E+  +A   I P+L   
Sbjct  61   ITGAKSEEDAKKAIRKIAPILQKL  84


 Score = 78.6 bits (195),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 30/43 (70%), Positives = 37/43 (86%), Gaps = 0/43 (0%)

Query  1   MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKL  43
            R+REPK TALIF+SGK+V+TGAKSE+D+K A RK A I+QKL
Sbjct  42  YRLREPKVTALIFSSGKIVITGAKSEEDAKKAIRKIAPILQKL  84



Lambda      K        H        a         alpha
   0.325    0.141    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00027098

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-bi...  134     2e-42


>CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, 
TBP).  
Length=84

 Score = 134 bits (339),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 44/82 (54%), Positives = 55/82 (67%), Gaps = 0/82 (0%)

Query  51   DFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIV  110
            D KIQN+V S D+ FPI LE LA +      YEPE FPGL+YR+ +PK+  LIF SGKIV
Sbjct  1    DIKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIV  60

Query  111  LTGAKVREEIYQAFELIYPVLS  132
            +TGAK  E+  +A   I P+L 
Sbjct  61   ITGAKSEEDAKKAIRKIAPILQ  82


 Score = 78.2 bits (194),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 30/43 (70%), Positives = 37/43 (86%), Gaps = 0/43 (0%)

Query  1   MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKL  43
            R+REPK TALIF+SGK+V+TGAKSE+D+K A RK A I+QKL
Sbjct  42  YRLREPKVTALIFSSGKIVITGAKSEEDAKKAIRKIAPILQKL  84



Lambda      K        H        a         alpha
   0.326    0.142    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00027097

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-bi...  139     7e-43


>CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, 
TBP).  
Length=84

 Score = 139 bits (354),  Expect = 7e-43, Method: Composition-based stats.
 Identities = 44/82 (54%), Positives = 55/82 (67%), Gaps = 0/82 (0%)

Query  178  DFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIV  237
            D KIQN+V S D+ FPI LE LA +      YEPE FPGL+YR+ +PK+  LIF SGKIV
Sbjct  1    DIKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIV  60

Query  238  LTGAKVREEIYQAFELIYPVLS  259
            +TGAK  E+  +A   I P+L 
Sbjct  61   ITGAKSEEDAKKAIRKIAPILQ  82


 Score = 139 bits (352),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 45/83 (54%), Positives = 62/83 (75%), Gaps = 1/83 (1%)

Query  89   PTLQNIVATVNLDCRLDLKTIAL-HARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVV  147
              +QN+VA+ +L   +DL+ +AL    N EY P+RF  ++ R+REPK TALIF+SGK+V+
Sbjct  2    IKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIVI  61

Query  148  TGAKSEDDSKLASRKYARIIQKL  170
            TGAKSE+D+K A RK A I+QKL
Sbjct  62   TGAKSEEDAKKAIRKIAPILQKL  84



Lambda      K        H        a         alpha
   0.319    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00022365

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-bi...  136     1e-43


>CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, 
TBP).  
Length=84

 Score = 136 bits (345),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 55/84 (65%), Gaps = 0/84 (0%)

Query  51   DFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIV  110
            D KIQN+V S D+ FPI LE LA +      YEPE FPGL+YR+ +PK+  LIF SGKIV
Sbjct  1    DIKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIV  60

Query  111  LTGAKVREEIYQAFELIYPVLSDF  134
            +TGAK  E+  +A   I P+L   
Sbjct  61   ITGAKSEEDAKKAIRKIAPILQKL  84


 Score = 78.6 bits (195),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 30/43 (70%), Positives = 37/43 (86%), Gaps = 0/43 (0%)

Query  1   MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKL  43
            R+REPK TALIF+SGK+V+TGAKSE+D+K A RK A I+QKL
Sbjct  42  YRLREPKVTALIFSSGKIVITGAKSEEDAKKAIRKIAPILQKL  84



Lambda      K        H        a         alpha
   0.325    0.141    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00022367

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-bi...  134     2e-42


>CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, 
TBP).  
Length=84

 Score = 134 bits (339),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 44/82 (54%), Positives = 55/82 (67%), Gaps = 0/82 (0%)

Query  51   DFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIV  110
            D KIQN+V S D+ FPI LE LA +      YEPE FPGL+YR+ +PK+  LIF SGKIV
Sbjct  1    DIKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIV  60

Query  111  LTGAKVREEIYQAFELIYPVLS  132
            +TGAK  E+  +A   I P+L 
Sbjct  61   ITGAKSEEDAKKAIRKIAPILQ  82


 Score = 78.2 bits (194),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 30/43 (70%), Positives = 37/43 (86%), Gaps = 0/43 (0%)

Query  1   MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKL  43
            R+REPK TALIF+SGK+V+TGAKSE+D+K A RK A I+QKL
Sbjct  42  YRLREPKVTALIFSSGKIVITGAKSEEDAKKAIRKIAPILQKL  84



Lambda      K        H        a         alpha
   0.326    0.142    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00022366

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-bi...  136     1e-43


>CDD:425630 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, 
TBP).  
Length=84

 Score = 136 bits (345),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 55/84 (65%), Gaps = 0/84 (0%)

Query  51   DFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIV  110
            D KIQN+V S D+ FPI LE LA +      YEPE FPGL+YR+ +PK+  LIF SGKIV
Sbjct  1    DIKIQNVVASADLGFPIDLEKLALKLLENVEYEPERFPGLVYRLREPKVTALIFSSGKIV  60

Query  111  LTGAKVREEIYQAFELIYPVLSDF  134
            +TGAK  E+  +A   I P+L   
Sbjct  61   ITGAKSEEDAKKAIRKIAPILQKL  84


 Score = 78.6 bits (195),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 30/43 (70%), Positives = 37/43 (86%), Gaps = 0/43 (0%)

Query  1   MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKL  43
            R+REPK TALIF+SGK+V+TGAKSE+D+K A RK A I+QKL
Sbjct  42  YRLREPKVTALIFSSGKIVITGAKSEEDAKKAIRKIAPILQKL  84



Lambda      K        H        a         alpha
   0.325    0.141    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00022369

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.121    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0736    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00022370

Length=507


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.125    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00022371

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00022373

Length=889
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  87.9    1e-19
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  56.5    5e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 87.9 bits (218),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 48/221 (22%), Positives = 80/221 (36%), Gaps = 13/221 (6%)

Query  309  YLTTVHPFFPIISRTLFSAQYRTFFESAGRPGDKWLAILNMIFAIAS----KHAHLTQAP  364
            +    HP FPI+ R  F   Y   F S        L  L  I A+ +         + + 
Sbjct  4    FFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLL--LLAILALGALFSESPTARSSSS  61

Query  365  WRGDERDHLVYLTRARILSMNGDTIFNHPDLQQVQVEGLIAFYLLASDQINRAWRIASLA  424
               +  D + +  RA IL    D       L  +Q   L+  Y L +      WR   LA
Sbjct  62   LTDEAADGIHFFLRALILIHE-DFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGLA  120

Query  425  VRSGISLG----INMKNTSETTPSISKEARYRVWWCLYTFEHMLGVMTGRSTCILDGVCT  480
            +R   SLG     +  + S        E R R++W  +  + ++ ++ GR   +L     
Sbjct  121  IRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPP-LLSDSDI  179

Query  481  TPMPLPFDEEQLREPFAAKLLADQDMRQAYIESAMASSYVR  521
              +PLP D++ L E  +A  +    +             ++
Sbjct  180  D-LPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIK  219


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 56.5 bits (137),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 0/35 (0%)

Query  94   RACESCRARKTKCSGDTPICRQCKELRVTCRYPVS  128
             AC++CR RK KC G  P C +C +  + C Y   
Sbjct  1    TACDNCRKRKVKCDGKKPACSRCIKNGLECTYSRK  35



Lambda      K        H        a         alpha
   0.318    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1139798116


Query= TCONS_00022372

Length=691
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  85.6    5e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 85.6 bits (212),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 81/221 (37%), Gaps = 13/221 (6%)

Query  111  YLTTVHPFFPIISRTLFSAQYRTFFESAGRPGDKWLAILNMIFAIAS----KHAHLTQAP  166
            +    HP FPI+ R  F   Y   F S        L  L  I A+ +         + + 
Sbjct  4    FFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLL--LLAILALGALFSESPTARSSSS  61

Query  167  WRGDERDHLVYLTRARILSMNGDTIFNHPDLQQVQVEGLIAFYLLASDQINRAWRIASLA  226
               +  D + +  RA IL     +  +   L  +Q   L+  Y L +      WR   LA
Sbjct  62   LTDEAADGIHFFLRALILIHEDFSSPS-SSLWILQALLLLELYELGTGDRKLHWRYHGLA  120

Query  227  VRSGISLG----INMKNTSETTPSISKEARYRVWWCLYTFEHMLGVMTGRSTCILDGVCT  282
            +R   SLG     +  + S        E R R++W  +  + ++ ++ GR   +L     
Sbjct  121  IRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPP-LLSDSDI  179

Query  283  TPMPLPFDEEQLREPFAAKLLADQDMRQAYIESAMASSYVR  323
              +PLP D++ L E  +A  +    +             ++
Sbjct  180  D-LPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIK  219



Lambda      K        H        a         alpha
   0.320    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 881924420


Query= TCONS_00022374

Length=741
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  86.0    4e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 86.0 bits (213),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 81/221 (37%), Gaps = 13/221 (6%)

Query  161  YLTTVHPFFPIISRTLFSAQYRTFFESAGRPGDKWLAILNMIFAIAS----KHAHLTQAP  216
            +    HP FPI+ R  F   Y   F S        L  L  I A+ +         + + 
Sbjct  4    FFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLL--LLAILALGALFSESPTARSSSS  61

Query  217  WRGDERDHLVYLTRARILSMNGDTIFNHPDLQQVQVEGLIAFYLLASDQINRAWRIASLA  276
               +  D + +  RA IL     +  +   L  +Q   L+  Y L +      WR   LA
Sbjct  62   LTDEAADGIHFFLRALILIHEDFSSPS-SSLWILQALLLLELYELGTGDRKLHWRYHGLA  120

Query  277  VRSGISLG----INMKNTSETTPSISKEARYRVWWCLYTFEHMLGVMTGRSTCILDGVCT  332
            +R   SLG     +  + S        E R R++W  +  + ++ ++ GR   +L     
Sbjct  121  IRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPP-LLSDSDI  179

Query  333  TPMPLPFDEEQLREPFAAKLLADQDMRQAYIESAMASSYVR  373
              +PLP D++ L E  +A  +    +             ++
Sbjct  180  D-LPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIK  219



Lambda      K        H        a         alpha
   0.319    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 941483344


Query= TCONS_00022375

Length=455


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00027099

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00022376

Length=683
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461058 pfam03801, Ndc80_HEC, HEC/Ndc80p family. Members of th...  266     1e-86


>CDD:461058 pfam03801, Ndc80_HEC, HEC/Ndc80p family.  Members of this family 
are components of the mitotic spindle. It has been shown 
that Ndc80/HEC from yeast is part of a complex called the Ndc80p 
complex. This complex is thought to bind to the microtubules 
of the spindle.
Length=159

 Score = 266 bits (682),  Expect = 1e-86, Method: Composition-based stats.
 Identities = 96/162 (59%), Positives = 116/162 (72%), Gaps = 5/162 (3%)

Query  68   RRSSVFSRPSVGGPMGHQSFFTQVPNAAGVPRDPRPLRDRSFQARIGQELLEYLTHNNFE  127
            RRSSV+     G    HQSFF+  P  A VPRDPRPLRD+SFQ +  QELLEYLT NNFE
Sbjct  2    RRSSVYGGRGGGPRSSHQSFFSSSPMPASVPRDPRPLRDKSFQQQCIQELLEYLTENNFE  61

Query  128  LEMKHSLGQNTLRSPTQKDFNYIFQFLYHRIDPGYRFQKSMDAEVPPILKQLRYPFEKGI  187
                H L    L+SPTQKDFN IF+FLYHR+DP Y FQK ++ EVP ILKQLRYPF   I
Sbjct  62   ----HPLSPKLLKSPTQKDFNSIFKFLYHRLDPSYEFQKKIEEEVPMILKQLRYPFLDSI  117

Query  188  TKSQIAAVGGQN-WPTFLGMLHWLMQLAQMMDRFVLGEYDEA  228
            +KSQ++AVGG + WPTFLG+LHWL++LA+ ++      YD+ 
Sbjct  118  SKSQLSAVGGPHTWPTFLGLLHWLVELAKFLEALEQNLYDDD  159



Lambda      K        H        a         alpha
   0.314    0.130    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 870126100


Query= TCONS_00027100

Length=736
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461058 pfam03801, Ndc80_HEC, HEC/Ndc80p family. Members of th...  264     2e-85


>CDD:461058 pfam03801, Ndc80_HEC, HEC/Ndc80p family.  Members of this family 
are components of the mitotic spindle. It has been shown 
that Ndc80/HEC from yeast is part of a complex called the Ndc80p 
complex. This complex is thought to bind to the microtubules 
of the spindle.
Length=159

 Score = 264 bits (677),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 96/162 (59%), Positives = 116/162 (72%), Gaps = 5/162 (3%)

Query  121  RRSSVFSRPSVGGPMGHQSFFTQVPNAAGVPRDPRPLRDRSFQARIGQELLEYLTHNNFE  180
            RRSSV+     G    HQSFF+  P  A VPRDPRPLRD+SFQ +  QELLEYLT NNFE
Sbjct  2    RRSSVYGGRGGGPRSSHQSFFSSSPMPASVPRDPRPLRDKSFQQQCIQELLEYLTENNFE  61

Query  181  LEMKHSLGQNTLRSPTQKDFNYIFQFLYHRIDPGYRFQKSMDAEVPPILKQLRYPFEKGI  240
                H L    L+SPTQKDFN IF+FLYHR+DP Y FQK ++ EVP ILKQLRYPF   I
Sbjct  62   ----HPLSPKLLKSPTQKDFNSIFKFLYHRLDPSYEFQKKIEEEVPMILKQLRYPFLDSI  117

Query  241  TKSQIAAVGGQN-WPTFLGMLHWLMQLAQMMDRFVLGEYDEA  281
            +KSQ++AVGG + WPTFLG+LHWL++LA+ ++      YD+ 
Sbjct  118  SKSQLSAVGGPHTWPTFLGLLHWLVELAKFLEALEQNLYDDD  159



Lambda      K        H        a         alpha
   0.314    0.130    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 934207584


Query= TCONS_00022377

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.119    0.311    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00022378

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461395 pfam04695, Pex14_N, Peroxisomal membrane anchor protei...  59.5    2e-12


>CDD:461395 pfam04695, Pex14_N, Peroxisomal membrane anchor protein (Pex14p) 
conserved region.  Family of peroxisomal membrane anchor 
proteins which bind the PTS1 (peroxisomal targeting signal) 
receptor and are required for the import of PTS1-containing 
proteins into peroxisomes. Loss of functional Pex14p results 
in defects in both the PTS1 and PTS2-dependent import pathways. 
Deletion analysis of this conserved region implicates 
it in selective peroxisome degradation. In the majority of members 
this region is situated at the N-terminus of the protein.
Length=46

 Score = 59.5 bits (145),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 21/35 (60%), Positives = 27/35 (77%), Gaps = 0/35 (0%)

Query  60  FLQDPSVASSPIEKRVAFLQSKNLTQEEIDLALSR  94
           FLQDPSV ++P EK+VAFL+SK L+ EEI+  L  
Sbjct  12  FLQDPSVRNAPREKKVAFLKSKGLSDEEIEELLGE  46



Lambda      K        H        a         alpha
   0.308    0.123    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 507942834


Query= TCONS_00022379

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.118    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00022380

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461395 pfam04695, Pex14_N, Peroxisomal membrane anchor protei...  68.7    1e-15


>CDD:461395 pfam04695, Pex14_N, Peroxisomal membrane anchor protein (Pex14p) 
conserved region.  Family of peroxisomal membrane anchor 
proteins which bind the PTS1 (peroxisomal targeting signal) 
receptor and are required for the import of PTS1-containing 
proteins into peroxisomes. Loss of functional Pex14p results 
in defects in both the PTS1 and PTS2-dependent import pathways. 
Deletion analysis of this conserved region implicates 
it in selective peroxisome degradation. In the majority of members 
this region is situated at the N-terminus of the protein.
Length=46

 Score = 68.7 bits (169),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 33/46 (72%), Gaps = 0/46 (0%)

Query  3   PREELVSSAVSFLQDPSVASSPIEKRVAFLQSKNLTQEEIDLALSR  48
            RE+L+  A  FLQDPSV ++P EK+VAFL+SK L+ EEI+  L  
Sbjct  1   DREDLLEQARKFLQDPSVRNAPREKKVAFLKSKGLSDEEIEELLGE  46



Lambda      K        H        a         alpha
   0.306    0.121    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00022381

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.118    0.306    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00022382

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461395 pfam04695, Pex14_N, Peroxisomal membrane anchor protei...  68.7    1e-15


>CDD:461395 pfam04695, Pex14_N, Peroxisomal membrane anchor protein (Pex14p) 
conserved region.  Family of peroxisomal membrane anchor 
proteins which bind the PTS1 (peroxisomal targeting signal) 
receptor and are required for the import of PTS1-containing 
proteins into peroxisomes. Loss of functional Pex14p results 
in defects in both the PTS1 and PTS2-dependent import pathways. 
Deletion analysis of this conserved region implicates 
it in selective peroxisome degradation. In the majority of members 
this region is situated at the N-terminus of the protein.
Length=46

 Score = 68.7 bits (169),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 33/46 (72%), Gaps = 0/46 (0%)

Query  3   PREELVSSAVSFLQDPSVASSPIEKRVAFLQSKNLTQEEIDLALSR  48
            RE+L+  A  FLQDPSV ++P EK+VAFL+SK L+ EEI+  L  
Sbjct  1   DREDLLEQARKFLQDPSVRNAPREKKVAFLKSKGLSDEEIEELLGE  46



Lambda      K        H        a         alpha
   0.306    0.121    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00022383

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.118    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00022384

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.118    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00022385

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.118    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00027101

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.118    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00022386

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.118    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00022387

Length=253


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.117    0.301    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00027102

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00027104

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00027103

Length=258


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00022388

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397308 pfam03133, TTL, Tubulin-tyrosine ligase family. Tubuli...  165     2e-48


>CDD:397308 pfam03133, TTL, Tubulin-tyrosine ligase family.  Tubulins and 
microtubules are subjected to several post-translational modifications 
of which the reversible detyrosination/tyrosination 
of the carboxy-terminal end of most alpha-tubulins has been 
extensively analysed. This modification cycle involves a 
specific carboxypeptidase and the activity of the tubulin-tyrosine 
ligase (TTL). The true physiological function of TTL 
has so far not been established. Tubulin-tyrosine ligase (TTL) 
catalyzes the ATP-dependent post-translational addition 
of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. 
In normally cycling cells, the tyrosinated form 
of tubulin predominates. However, in breast cancer cells, 
the detyrosinated form frequently predominates, with a correlation 
to tumor aggressiveness. On the other hand, 3-nitrotyrosine 
has been shown to be incorporated, by TTL, into the carboxy 
terminal end of detyrosinated alpha-tubulin. This reaction 
is not reversible by the carboxypeptidase enzyme. Cells 
cultured in 3-nitrotyrosine rich medium showed evidence of 
altered microtubule structure and function, including altered 
cell morphology, epithelial barrier dysfunction, and apoptosis. 
Bacterial homologs of TTL are predicted to form peptide 
tags. Some of these are fused to a 2-oxoglutarate Fe(II)-dependent 
dioxygenase domain.
Length=291

 Score = 165 bits (421),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 91/331 (27%), Positives = 132/331 (40%), Gaps = 71/331 (21%)

Query  118  TKHPNSVLRNHF-----------------KFACDFELDYAEFLDEALLEAYELRESLDR-  159
               P     NHF                 +  CD  L       + L   + L   L   
Sbjct  3    LDEPYHQALNHFPGSYEITRKDLLWKNIKRTPCDRGLKG-----DFLPRTFILPTDLAEF  57

Query  160  NEGKPDSEKEWWILKAGMSDRGQGIRLFNSEDQLREIFEEWEEDNSDDGSEPENPDTEDQ  219
             +   D E+  WI+K   S RG+GIR+ N   Q+ +                        
Sbjct  58   VDYFEDRERNTWIVKPSASARGRGIRVTNKLSQIPKW-----------------------  94

Query  220  NGDRDGQGVVTSQLRHFIAQPYIDPPLILPSSSNRKFHIRTYVLA--VGSLKVYVYKEML  277
                       SQ R  + Q YI+ PL++     RKF IR YVL   V  L+VYVY+E L
Sbjct  95   -----------SQSRPLVVQKYIERPLLID---GRKFDIRLYVLVTSVNPLRVYVYREGL  140

Query  278  ALFAAKPYCPPWEDEDEVIDLARHLTNTCFQEGGSTNEGSVRRF----WDLDHHVPGLSH  333
              FA+  Y P   D D   D+  HLTN   Q+  S+            W L +    L  
Sbjct  141  LRFASVKYSPSSSDLD---DVEMHLTNYSIQKKSSSLNEDYNEPHGHKWSLQNFWKYLEE  197

Query  334  GWKEKIFDQICAVTGEVFEAAARGMMV-HFQTLPNAFELFGVDFLVDKDGVPWLLELNAY  392
              K++I+ +I ++  +   AA       + Q LPN FEL+G DF++D++  PWLLE+N+ 
Sbjct  198  KDKDEIWLEIESIIIKTILAAEVEASRLNVQPLPNCFELYGFDFMIDENLKPWLLEVNSS  257

Query  393  PDFGQTGEKLKNLVVGRLFEETVEIAVKPFF  423
            P    T +    L   +L ++ +   V P  
Sbjct  258  PSLHSTTKLDARL-KEQLIDDVLNSVVPPDL  287



Lambda      K        H        a         alpha
   0.319    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00027106

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00027105

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0808    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00022390

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00022389

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00022391

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00022392

Length=443


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00027107

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00022394

Length=944
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459868 pfam00611, FCH, Fes/CIP4, and EFC/F-BAR homology domai...  83.5    5e-20
CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  61.1    1e-12
CDD:434066 pfam14604, SH3_9, Variant SH3 domain                       58.8    1e-11
CDD:429575 pfam07653, SH3_2, Variant SH3 domain. SH3 (Src homolog...  56.8    5e-11


>CDD:459868 pfam00611, FCH, Fes/CIP4, and EFC/F-BAR homology domain.  Alignment 
extended from. Highly alpha-helical. The cytosolic endocytic 
adaptor proteins in fungi carry this domain at the N-terminus; 
several of these have been referred to as muniscin 
proteins. These N-terminal BAR, N-BAR, and EFC/F-BAR domains 
are found in proteins that regulate membrane trafficking 
events by inducing membrane tubulation. The domain dimerizes 
into a curved structure that binds to liposomes and either 
senses or induces the curvature of the membrane bilayer to cause 
biophysical changes to the shape of the bilayer; it also 
thereby recruits other trafficking factors, such as the GTPase 
dynamin. Most EFC/F-BAR domain-family members localize 
to actin-rich structures.
Length=78

 Score = 83.5 bits (207),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 26/77 (34%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query  26  GVGPMLDRMHGAKVTCDELKTFYNIRAAIEDEYSRKLMALCRKPLG-----THETGSLRS  80
           G   +L R+       +EL +F   RA IE+EY++KL  L +K L        + G+L+ 
Sbjct  1   GFKVLLKRLKQGIKLLEELASFLKERAEIEEEYAKKLQKLAKKFLKKKKKPEDDGGTLKK  60

Query  81  SFDVVRGETESIAKSHA  97
           ++D +  ETE +AK H 
Sbjct  61  AWDELLTETEQLAKQHL  77


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 61.1 bits (149),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 22/49 (45%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query  890  RALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPS  938
             ALY YTA  P+EL F KGD++ V+   +DGWW+        + GL+PS
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKG--GKEGLIPS  47


>CDD:434066 pfam14604, SH3_9, Variant SH3 domain.  
Length=49

 Score = 58.8 bits (143),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 3/52 (6%)

Query  891  ALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPSNYLQ  942
            ALY Y     +EL   +GDV++VI   +DGWWE   T    RTGLVP+NY++
Sbjct  1    ALYPYEPKDDDELSLQRGDVITVIEESEDGWWEGINT---GRTGLVPANYVE  49


>CDD:429575 pfam07653, SH3_2, Variant SH3 domain.  SH3 (Src homology 3) domains 
are often indicative of a protein involved in signal 
transduction related to cytoskeletal organisation. First described 
in the Src cytoplasmic tyrosine kinase. The structure 
is a partly opened beta barrel.
Length=54

 Score = 56.8 bits (138),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 22/57 (39%), Positives = 30/57 (53%), Gaps = 3/57 (5%)

Query  888  FARALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPSNYLQII  944
            + R ++ Y       L   KGDV+ V+   +DGWWE E   T  R GLVPS  ++ I
Sbjct  1    YGRVIFDYVGTDKNGLTLKKGDVVKVLGKDNDGWWEGE---TGGRVGLVPSTAVEEI  54



Lambda      K        H        a         alpha
   0.310    0.126    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1200662848


Query= TCONS_00027108

Length=487


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.123    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00022395

Length=915
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459868 pfam00611, FCH, Fes/CIP4, and EFC/F-BAR homology domai...  80.4    4e-19
CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  61.1    1e-12
CDD:434066 pfam14604, SH3_9, Variant SH3 domain                       58.8    1e-11
CDD:429575 pfam07653, SH3_2, Variant SH3 domain. SH3 (Src homolog...  56.8    5e-11


>CDD:459868 pfam00611, FCH, Fes/CIP4, and EFC/F-BAR homology domain.  Alignment 
extended from. Highly alpha-helical. The cytosolic endocytic 
adaptor proteins in fungi carry this domain at the N-terminus; 
several of these have been referred to as muniscin 
proteins. These N-terminal BAR, N-BAR, and EFC/F-BAR domains 
are found in proteins that regulate membrane trafficking 
events by inducing membrane tubulation. The domain dimerizes 
into a curved structure that binds to liposomes and either 
senses or induces the curvature of the membrane bilayer to cause 
biophysical changes to the shape of the bilayer; it also 
thereby recruits other trafficking factors, such as the GTPase 
dynamin. Most EFC/F-BAR domain-family members localize 
to actin-rich structures.
Length=78

 Score = 80.4 bits (199),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 25/72 (35%), Positives = 39/72 (54%), Gaps = 5/72 (7%)

Query  2   LDRMHGAKVTCDELKTFYNIRAAIEDEYSRKLMALCRKPLG-----THETGSLRSSFDVV  56
           L R+       +EL +F   RA IE+EY++KL  L +K L        + G+L+ ++D +
Sbjct  6   LKRLKQGIKLLEELASFLKERAEIEEEYAKKLQKLAKKFLKKKKKPEDDGGTLKKAWDEL  65

Query  57  RGETESIAKSHA  68
             ETE +AK H 
Sbjct  66  LTETEQLAKQHL  77


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 61.1 bits (149),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 22/49 (45%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query  861  RALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPS  909
             ALY YTA  P+EL F KGD++ V+   +DGWW+        + GL+PS
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKG--GKEGLIPS  47


>CDD:434066 pfam14604, SH3_9, Variant SH3 domain.  
Length=49

 Score = 58.8 bits (143),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 3/52 (6%)

Query  862  ALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPSNYLQ  913
            ALY Y     +EL   +GDV++VI   +DGWWE   T    RTGLVP+NY++
Sbjct  1    ALYPYEPKDDDELSLQRGDVITVIEESEDGWWEGINT---GRTGLVPANYVE  49


>CDD:429575 pfam07653, SH3_2, Variant SH3 domain.  SH3 (Src homology 3) domains 
are often indicative of a protein involved in signal 
transduction related to cytoskeletal organisation. First described 
in the Src cytoplasmic tyrosine kinase. The structure 
is a partly opened beta barrel.
Length=54

 Score = 56.8 bits (138),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 22/57 (39%), Positives = 30/57 (53%), Gaps = 3/57 (5%)

Query  859  FARALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPSNYLQII  915
            + R ++ Y       L   KGDV+ V+   +DGWWE E   T  R GLVPS  ++ I
Sbjct  1    YGRVIFDYVGTDKNGLTLKKGDVVKVLGKDNDGWWEGE---TGGRVGLVPSTAVEEI  54



Lambda      K        H        a         alpha
   0.310    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1177121480


Query= TCONS_00027109

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  61.1    7e-13
CDD:434066 pfam14604, SH3_9, Variant SH3 domain                       58.8    6e-12
CDD:429575 pfam07653, SH3_2, Variant SH3 domain. SH3 (Src homolog...  56.8    3e-11


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 61.1 bits (149),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 22/49 (45%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query  487  RALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPS  535
             ALY YTA  P+EL F KGD++ V+   +DGWW+        + GL+PS
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKG--GKEGLIPS  47


>CDD:434066 pfam14604, SH3_9, Variant SH3 domain.  
Length=49

 Score = 58.8 bits (143),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 3/52 (6%)

Query  488  ALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPSNYLQ  539
            ALY Y     +EL   +GDV++VI   +DGWWE   T    RTGLVP+NY++
Sbjct  1    ALYPYEPKDDDELSLQRGDVITVIEESEDGWWEGINT---GRTGLVPANYVE  49


>CDD:429575 pfam07653, SH3_2, Variant SH3 domain.  SH3 (Src homology 3) domains 
are often indicative of a protein involved in signal 
transduction related to cytoskeletal organisation. First described 
in the Src cytoplasmic tyrosine kinase. The structure 
is a partly opened beta barrel.
Length=54

 Score = 56.8 bits (138),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 22/57 (39%), Positives = 30/57 (53%), Gaps = 3/57 (5%)

Query  485  FARALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPSNYLQII  541
            + R ++ Y       L   KGDV+ V+   +DGWWE E   T  R GLVPS  ++ I
Sbjct  1    YGRVIFDYVGTDKNGLTLKKGDVVKVLGKDNDGWWEGE---TGGRVGLVPSTAVEEI  54



Lambda      K        H        a         alpha
   0.308    0.124    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00022396

Length=487


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.123    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00027110

Length=779
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  61.1    1e-12
CDD:434066 pfam14604, SH3_9, Variant SH3 domain                       58.8    9e-12
CDD:429575 pfam07653, SH3_2, Variant SH3 domain. SH3 (Src homolog...  56.8    4e-11


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 61.1 bits (149),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 22/49 (45%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query  725  RALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPS  773
             ALY YTA  P+EL F KGD++ V+   +DGWW+        + GL+PS
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKG--GKEGLIPS  47


>CDD:434066 pfam14604, SH3_9, Variant SH3 domain.  
Length=49

 Score = 58.8 bits (143),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 3/52 (6%)

Query  726  ALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPSNYLQ  777
            ALY Y     +EL   +GDV++VI   +DGWWE   T    RTGLVP+NY++
Sbjct  1    ALYPYEPKDDDELSLQRGDVITVIEESEDGWWEGINT---GRTGLVPANYVE  49


>CDD:429575 pfam07653, SH3_2, Variant SH3 domain.  SH3 (Src homology 3) domains 
are often indicative of a protein involved in signal 
transduction related to cytoskeletal organisation. First described 
in the Src cytoplasmic tyrosine kinase. The structure 
is a partly opened beta barrel.
Length=54

 Score = 56.8 bits (138),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 22/57 (39%), Positives = 30/57 (53%), Gaps = 3/57 (5%)

Query  723  FARALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPSNYLQII  779
            + R ++ Y       L   KGDV+ V+   +DGWWE E   T  R GLVPS  ++ I
Sbjct  1    YGRVIFDYVGTDKNGLTLKKGDVVKVLGKDNDGWWEGE---TGGRVGLVPSTAVEEI  54



Lambda      K        H        a         alpha
   0.308    0.125    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 996779120


Query= TCONS_00022397

Length=820
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459868 pfam00611, FCH, Fes/CIP4, and EFC/F-BAR homology domai...  83.5    4e-20


>CDD:459868 pfam00611, FCH, Fes/CIP4, and EFC/F-BAR homology domain.  Alignment 
extended from. Highly alpha-helical. The cytosolic endocytic 
adaptor proteins in fungi carry this domain at the N-terminus; 
several of these have been referred to as muniscin 
proteins. These N-terminal BAR, N-BAR, and EFC/F-BAR domains 
are found in proteins that regulate membrane trafficking 
events by inducing membrane tubulation. The domain dimerizes 
into a curved structure that binds to liposomes and either 
senses or induces the curvature of the membrane bilayer to cause 
biophysical changes to the shape of the bilayer; it also 
thereby recruits other trafficking factors, such as the GTPase 
dynamin. Most EFC/F-BAR domain-family members localize 
to actin-rich structures.
Length=78

 Score = 83.5 bits (207),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 26/77 (34%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query  26  GVGPMLDRMHGAKVTCDELKTFYNIRAAIEDEYSRKLMALCRKPLG-----THETGSLRS  80
           G   +L R+       +EL +F   RA IE+EY++KL  L +K L        + G+L+ 
Sbjct  1   GFKVLLKRLKQGIKLLEELASFLKERAEIEEEYAKKLQKLAKKFLKKKKKPEDDGGTLKK  60

Query  81  SFDVVRGETESIAKSHA  97
           ++D +  ETE +AK H 
Sbjct  61  AWDELLTETEQLAKQHL  77



Lambda      K        H        a         alpha
   0.309    0.125    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1040747650


Query= TCONS_00027111

Length=882
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  61.1    1e-12
CDD:434066 pfam14604, SH3_9, Variant SH3 domain                       58.8    1e-11
CDD:429575 pfam07653, SH3_2, Variant SH3 domain. SH3 (Src homolog...  56.8    4e-11


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 61.1 bits (149),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 22/49 (45%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query  828  RALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPS  876
             ALY YTA  P+EL F KGD++ V+   +DGWW+        + GL+PS
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKG--GKEGLIPS  47


>CDD:434066 pfam14604, SH3_9, Variant SH3 domain.  
Length=49

 Score = 58.8 bits (143),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 3/52 (6%)

Query  829  ALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPSNYLQ  880
            ALY Y     +EL   +GDV++VI   +DGWWE   T    RTGLVP+NY++
Sbjct  1    ALYPYEPKDDDELSLQRGDVITVIEESEDGWWEGINT---GRTGLVPANYVE  49


>CDD:429575 pfam07653, SH3_2, Variant SH3 domain.  SH3 (Src homology 3) domains 
are often indicative of a protein involved in signal 
transduction related to cytoskeletal organisation. First described 
in the Src cytoplasmic tyrosine kinase. The structure 
is a partly opened beta barrel.
Length=54

 Score = 56.8 bits (138),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 22/57 (39%), Positives = 30/57 (53%), Gaps = 3/57 (5%)

Query  826  FARALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPSNYLQII  882
            + R ++ Y       L   KGDV+ V+   +DGWWE E   T  R GLVPS  ++ I
Sbjct  1    YGRVIFDYVGTDKNGLTLKKGDVVKVLGKDNDGWWEGE---TGGRVGLVPSTAVEEI  54



Lambda      K        H        a         alpha
   0.309    0.126    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1129749518


Query= TCONS_00022398

Length=944
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459868 pfam00611, FCH, Fes/CIP4, and EFC/F-BAR homology domai...  83.5    5e-20
CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  61.1    1e-12
CDD:434066 pfam14604, SH3_9, Variant SH3 domain                       58.8    1e-11
CDD:429575 pfam07653, SH3_2, Variant SH3 domain. SH3 (Src homolog...  56.8    5e-11


>CDD:459868 pfam00611, FCH, Fes/CIP4, and EFC/F-BAR homology domain.  Alignment 
extended from. Highly alpha-helical. The cytosolic endocytic 
adaptor proteins in fungi carry this domain at the N-terminus; 
several of these have been referred to as muniscin 
proteins. These N-terminal BAR, N-BAR, and EFC/F-BAR domains 
are found in proteins that regulate membrane trafficking 
events by inducing membrane tubulation. The domain dimerizes 
into a curved structure that binds to liposomes and either 
senses or induces the curvature of the membrane bilayer to cause 
biophysical changes to the shape of the bilayer; it also 
thereby recruits other trafficking factors, such as the GTPase 
dynamin. Most EFC/F-BAR domain-family members localize 
to actin-rich structures.
Length=78

 Score = 83.5 bits (207),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 26/77 (34%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query  26  GVGPMLDRMHGAKVTCDELKTFYNIRAAIEDEYSRKLMALCRKPLG-----THETGSLRS  80
           G   +L R+       +EL +F   RA IE+EY++KL  L +K L        + G+L+ 
Sbjct  1   GFKVLLKRLKQGIKLLEELASFLKERAEIEEEYAKKLQKLAKKFLKKKKKPEDDGGTLKK  60

Query  81  SFDVVRGETESIAKSHA  97
           ++D +  ETE +AK H 
Sbjct  61  AWDELLTETEQLAKQHL  77


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 61.1 bits (149),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 22/49 (45%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query  890  RALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPS  938
             ALY YTA  P+EL F KGD++ V+   +DGWW+        + GL+PS
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKG--GKEGLIPS  47


>CDD:434066 pfam14604, SH3_9, Variant SH3 domain.  
Length=49

 Score = 58.8 bits (143),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 3/52 (6%)

Query  891  ALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPSNYLQ  942
            ALY Y     +EL   +GDV++VI   +DGWWE   T    RTGLVP+NY++
Sbjct  1    ALYPYEPKDDDELSLQRGDVITVIEESEDGWWEGINT---GRTGLVPANYVE  49


>CDD:429575 pfam07653, SH3_2, Variant SH3 domain.  SH3 (Src homology 3) domains 
are often indicative of a protein involved in signal 
transduction related to cytoskeletal organisation. First described 
in the Src cytoplasmic tyrosine kinase. The structure 
is a partly opened beta barrel.
Length=54

 Score = 56.8 bits (138),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 22/57 (39%), Positives = 30/57 (53%), Gaps = 3/57 (5%)

Query  888  FARALYSYTAAIPEELGFSKGDVLSVIRLQDDGWWEAEITTTRSRTGLVPSNYLQII  944
            + R ++ Y       L   KGDV+ V+   +DGWWE E   T  R GLVPS  ++ I
Sbjct  1    YGRVIFDYVGTDKNGLTLKKGDVVKVLGKDNDGWWEGE---TGGRVGLVPSTAVEEI  54



Lambda      K        H        a         alpha
   0.310    0.126    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1200662848


Query= TCONS_00027113

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.120    0.309    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00027112

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.120    0.309    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00022400

Length=792
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462758 pfam09329, zf-primase, Primase zinc finger. This zinc ...  86.8    9e-22


>CDD:462758 pfam09329, zf-primase, Primase zinc finger.  This zinc finger 
is found in yeast Mcm10 proteins and DnaG-type primases.
Length=46

 Score = 86.8 bits (216),  Expect = 9e-22, Method: Composition-based stats.
 Identities = 21/46 (46%), Positives = 38/46 (83%), Gaps = 0/46 (0%)

Query  504  GYAQDIGFCKAVRKDGKTCQSWVDGRKTEFCDFHLDIQVRRAQSQR  549
            G ++D+G+CKAV+KDGK C SW++ RK E+C++H++   R+++++R
Sbjct  1    GTSRDLGYCKAVKKDGKPCTSWINKRKGEYCEYHVEAAYRKSRAKR  46



Lambda      K        H        a         alpha
   0.312    0.129    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1015696096


Query= TCONS_00022401

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00022402

Length=551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463125 pfam10509, GalKase_gal_bdg, Galactokinase galactose-bi...  84.0    7e-21
CDD:395225 pfam00288, GHMP_kinases_N, GHMP kinases N terminal dom...  56.0    8e-11


>CDD:463125 pfam10509, GalKase_gal_bdg, Galactokinase galactose-binding signature. 
 This is the highly conserved galactokinase signature 
sequence which appears to be present in all galactokinases 
irrespective of how many other ATP binding sites, etc that 
they carry. The function of this domain appears to be to bind 
galactose, and the domain is normally at the N-terminus 
of the enzymes, EC:2.7.1.6. This domain is associated with the 
families GHMP_kinases_C, pfam08544 and GHMP_kinases_N, pfam00288.
Length=50

 Score = 84.0 bits (209),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 0/49 (0%)

Query  41  AHFNKLYGHRPDFVARSPGRVNIIGEHIDYNLYDVLPTAVSVDVIIAVK  89
             F +L+G  P  VA +PGRVN+IGEH DYN   VLP A+++D  +AV 
Sbjct  1   EAFEELFGKEPVGVASAPGRVNLIGEHTDYNGGFVLPAAINLDTYVAVS  49


>CDD:395225 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain.  This 
family includes homoserine kinases, galactokinases and mevalonate 
kinases.
Length=64

 Score = 56.0 bits (136),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (49%), Gaps = 6/70 (9%)

Query  162  EVLVDGNVPPGGGISSSAAFVCASALAVMKANGHNVSKQDLLDLAVVSERAVGVYSLCCR  221
            ++ ++ N+P G G+ SSAA   A  LA+ +  G       L  LA+ +E   G       
Sbjct  1    DIEIESNIPLGAGLGSSAALAVALLLALNELFGLP-----LAKLALEAEELAGG-GRGGG  54

Query  222  MDQAASIFSR  231
            MD AAS++  
Sbjct  55   MDVAASLYGG  64



Lambda      K        H        a         alpha
   0.319    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685942452


Query= TCONS_00022403

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00027114

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0728    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00027115

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00027116

Length=290


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00022404

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00022405

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00022406

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00022407

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00027118

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00027119

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00022408

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00027120

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00022409

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  208     7e-66
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  155     1e-45
CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  146     5e-42


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 208 bits (533),  Expect = 7e-66, Method: Composition-based stats.
 Identities = 76/151 (50%), Positives = 95/151 (63%), Gaps = 3/151 (2%)

Query  355  GVGQHQMWAAQHFRWRHPRTMITSGGLGTMGYGLPAAIGAKVARPDCLVIDIDGDASFNM  414
             +G HQMWAAQ++R+R PR  +TSGGLGTMGYGLPAAIGAK+ARPD  V+ I GD  F M
Sbjct  1    DIGCHQMWAAQYYRFRPPRRYLTSGGLGTMGYGLPAAIGAKLARPDRPVVAIAGDGGFQM  60

Query  415  TLTELTTAAQFNIGVKVLLLNNEEQGMVTQWQNLFYEDRYSHTH---QKNPDFVPMARSM  471
             L EL TA ++N+ + V++LNN   GM    Q  F   RYS          DF  +A + 
Sbjct  61   NLQELATAVRYNLPITVVVLNNGGYGMTRGQQTPFGGGRYSGPSGKILPPVDFAKLAEAY  120

Query  472  GVAAERCTKPSEVEEKLKWLIESDGPALLEV  502
            G    R   P E+EE LK  +E DGPAL++V
Sbjct  121  GAKGARVESPEELEEALKEALEHDGPALIDV  151


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 155 bits (393),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 66/147 (45%), Positives = 87/147 (59%), Gaps = 11/147 (7%)

Query  147  IDRVARLVNIAQKPVLYVGQGLLARPDGPKVLKELADKACIPVTTTLQGLGGFDELDPKA  206
            I++ A L+  A++PV+  G G+  R    + L+ELA+K  IPV TTL G G F E  P  
Sbjct  1    IEKAAELLKKAKRPVILAGGGV-RRSGASEELRELAEKLGIPVVTTLMGKGAFPEDHPLY  59

Query  207  LHMLGMHGSAYANMAMQEADLIIAVGARFDD-RVTGNLSKFAPQAKLAASEKRGGIVHFE  265
            L MLGMHG+  AN A++EADL++AVGARFDD R TG L +FAP AK         I+H +
Sbjct  60   LGMLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAK---------IIHID  110

Query  266  IMPKNINKVVQANEAVEGDCAENIRLL  292
            I P  I K    +  + GD  E +  L
Sbjct  111  IDPAEIGKNYPVDVPIVGDAKETLEAL  137


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 146 bits (371),  Expect = 5e-42, Method: Composition-based stats.
 Identities = 56/110 (51%), Positives = 74/110 (67%), Gaps = 1/110 (1%)

Query  1    MAEGYARASGKPGVVLVTSGPGATNVITPMQDALSDGTPMVVFCGQVPTSSIGTDSFQ-E  59
             A+GYARA+GKPGVVLVTSGPGATN +T + +A  D  P++V  GQ P S +G  + Q E
Sbjct  52   AADGYARATGKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVGRGALQQE  111

Query  60   ADVVGISRACTKWNVMVKSVAELPRRIQEAFEIATSGRPGPVLVDLPKDI  109
             D + + R  TKW V V S  E+P  ++ AF  A SGRPGPV +++P D+
Sbjct  112  LDQLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDV  161



Lambda      K        H        a         alpha
   0.318    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00027121

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00027122

Length=743
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  210     5e-65
CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  209     3e-64
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  157     2e-45


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 210 bits (538),  Expect = 5e-65, Method: Composition-based stats.
 Identities = 76/151 (50%), Positives = 95/151 (63%), Gaps = 3/151 (2%)

Query  549  GVGQHQMWAAQHFRWRHPRTMITSGGLGTMGYGLPAAIGAKVARPDCLVIDIDGDASFNM  608
             +G HQMWAAQ++R+R PR  +TSGGLGTMGYGLPAAIGAK+ARPD  V+ I GD  F M
Sbjct  1    DIGCHQMWAAQYYRFRPPRRYLTSGGLGTMGYGLPAAIGAKLARPDRPVVAIAGDGGFQM  60

Query  609  TLTELTTAAQFNIGVKVLLLNNEEQGMVTQWQNLFYEDRYSHTH---QKNPDFVPMARSM  665
             L EL TA ++N+ + V++LNN   GM    Q  F   RYS          DF  +A + 
Sbjct  61   NLQELATAVRYNLPITVVVLNNGGYGMTRGQQTPFGGGRYSGPSGKILPPVDFAKLAEAY  120

Query  666  GVAAERCTKPSEVEEKLKWLIESDGPALLEV  696
            G    R   P E+EE LK  +E DGPAL++V
Sbjct  121  GAKGARVESPEELEEALKEALEHDGPALIDV  151


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 209 bits (534),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 79/161 (49%), Positives = 105/161 (65%), Gaps = 1/161 (1%)

Query  144  GGQIFHEMMLRLGVKHIFGYPGGAILPVFDAIYNSKHFDFVLPRHEQGAGHMAEGYARAS  203
            G +   +++  LGV  +FG PGG ILP+ DA+  S    +VL RHEQGA   A+GYARA+
Sbjct  1    GAEALADVLKALGVDTVFGVPGGHILPLLDALAKSPGIRYVLTRHEQGAAFAADGYARAT  60

Query  204  GKPGVVLVTSGPGATNVITPMQDALSDGTPMVVFCGQVPTSSIGTDSFQ-EADVVGISRA  262
            GKPGVVLVTSGPGATN +T + +A  D  P++V  GQ P S +G  + Q E D + + R 
Sbjct  61   GKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVGRGALQQELDQLALFRP  120

Query  263  CTKWNVMVKSVAELPRRIQEAFEIATSGRPGPVLVDLPKDI  303
             TKW V V S  E+P  ++ AF  A SGRPGPV +++P D+
Sbjct  121  VTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDV  161


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 157 bits (399),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 66/147 (45%), Positives = 87/147 (59%), Gaps = 11/147 (7%)

Query  341  IDRVARLVNIAQKPVLYVGQGLLARPDGPKVLKELADKACIPVTTTLQGLGGFDELDPKA  400
            I++ A L+  A++PV+  G G+  R    + L+ELA+K  IPV TTL G G F E  P  
Sbjct  1    IEKAAELLKKAKRPVILAGGGV-RRSGASEELRELAEKLGIPVVTTLMGKGAFPEDHPLY  59

Query  401  LHMLGMHGSAYANMAMQEADLIIAVGARFDD-RVTGNLSKFAPQAKLAASEKRGGIVHFE  459
            L MLGMHG+  AN A++EADL++AVGARFDD R TG L +FAP AK         I+H +
Sbjct  60   LGMLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAK---------IIHID  110

Query  460  IMPKNINKVVQANEAVEGDCAENIRLL  486
            I P  I K    +  + GD  E +  L
Sbjct  111  IDPAEIGKNYPVDVPIVGDAKETLEAL  137



Lambda      K        H        a         alpha
   0.319    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 944393648


Query= TCONS_00022410

Length=743
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  210     5e-65
CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  209     3e-64
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  157     2e-45


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 210 bits (538),  Expect = 5e-65, Method: Composition-based stats.
 Identities = 76/151 (50%), Positives = 95/151 (63%), Gaps = 3/151 (2%)

Query  549  GVGQHQMWAAQHFRWRHPRTMITSGGLGTMGYGLPAAIGAKVARPDCLVIDIDGDASFNM  608
             +G HQMWAAQ++R+R PR  +TSGGLGTMGYGLPAAIGAK+ARPD  V+ I GD  F M
Sbjct  1    DIGCHQMWAAQYYRFRPPRRYLTSGGLGTMGYGLPAAIGAKLARPDRPVVAIAGDGGFQM  60

Query  609  TLTELTTAAQFNIGVKVLLLNNEEQGMVTQWQNLFYEDRYSHTH---QKNPDFVPMARSM  665
             L EL TA ++N+ + V++LNN   GM    Q  F   RYS          DF  +A + 
Sbjct  61   NLQELATAVRYNLPITVVVLNNGGYGMTRGQQTPFGGGRYSGPSGKILPPVDFAKLAEAY  120

Query  666  GVAAERCTKPSEVEEKLKWLIESDGPALLEV  696
            G    R   P E+EE LK  +E DGPAL++V
Sbjct  121  GAKGARVESPEELEEALKEALEHDGPALIDV  151


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 209 bits (534),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 79/161 (49%), Positives = 105/161 (65%), Gaps = 1/161 (1%)

Query  144  GGQIFHEMMLRLGVKHIFGYPGGAILPVFDAIYNSKHFDFVLPRHEQGAGHMAEGYARAS  203
            G +   +++  LGV  +FG PGG ILP+ DA+  S    +VL RHEQGA   A+GYARA+
Sbjct  1    GAEALADVLKALGVDTVFGVPGGHILPLLDALAKSPGIRYVLTRHEQGAAFAADGYARAT  60

Query  204  GKPGVVLVTSGPGATNVITPMQDALSDGTPMVVFCGQVPTSSIGTDSFQ-EADVVGISRA  262
            GKPGVVLVTSGPGATN +T + +A  D  P++V  GQ P S +G  + Q E D + + R 
Sbjct  61   GKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVGRGALQQELDQLALFRP  120

Query  263  CTKWNVMVKSVAELPRRIQEAFEIATSGRPGPVLVDLPKDI  303
             TKW V V S  E+P  ++ AF  A SGRPGPV +++P D+
Sbjct  121  VTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDV  161


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 157 bits (399),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 66/147 (45%), Positives = 87/147 (59%), Gaps = 11/147 (7%)

Query  341  IDRVARLVNIAQKPVLYVGQGLLARPDGPKVLKELADKACIPVTTTLQGLGGFDELDPKA  400
            I++ A L+  A++PV+  G G+  R    + L+ELA+K  IPV TTL G G F E  P  
Sbjct  1    IEKAAELLKKAKRPVILAGGGV-RRSGASEELRELAEKLGIPVVTTLMGKGAFPEDHPLY  59

Query  401  LHMLGMHGSAYANMAMQEADLIIAVGARFDD-RVTGNLSKFAPQAKLAASEKRGGIVHFE  459
            L MLGMHG+  AN A++EADL++AVGARFDD R TG L +FAP AK         I+H +
Sbjct  60   LGMLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAK---------IIHID  110

Query  460  IMPKNINKVVQANEAVEGDCAENIRLL  486
            I P  I K    +  + GD  E +  L
Sbjct  111  IDPAEIGKNYPVDVPIVGDAKETLEAL  137



Lambda      K        H        a         alpha
   0.319    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 944393648


Query= TCONS_00022412

Length=752
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  210     6e-65
CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  209     4e-64
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  157     2e-45


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 210 bits (538),  Expect = 6e-65, Method: Composition-based stats.
 Identities = 76/151 (50%), Positives = 95/151 (63%), Gaps = 3/151 (2%)

Query  558  GVGQHQMWAAQHFRWRHPRTMITSGGLGTMGYGLPAAIGAKVARPDCLVIDIDGDASFNM  617
             +G HQMWAAQ++R+R PR  +TSGGLGTMGYGLPAAIGAK+ARPD  V+ I GD  F M
Sbjct  1    DIGCHQMWAAQYYRFRPPRRYLTSGGLGTMGYGLPAAIGAKLARPDRPVVAIAGDGGFQM  60

Query  618  TLTELTTAAQFNIGVKVLLLNNEEQGMVTQWQNLFYEDRYSHTH---QKNPDFVPMARSM  674
             L EL TA ++N+ + V++LNN   GM    Q  F   RYS          DF  +A + 
Sbjct  61   NLQELATAVRYNLPITVVVLNNGGYGMTRGQQTPFGGGRYSGPSGKILPPVDFAKLAEAY  120

Query  675  GVAAERCTKPSEVEEKLKWLIESDGPALLEV  705
            G    R   P E+EE LK  +E DGPAL++V
Sbjct  121  GAKGARVESPEELEEALKEALEHDGPALIDV  151


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 209 bits (534),  Expect = 4e-64, Method: Composition-based stats.
 Identities = 79/161 (49%), Positives = 105/161 (65%), Gaps = 1/161 (1%)

Query  153  GGQIFHEMMLRLGVKHIFGYPGGAILPVFDAIYNSKHFDFVLPRHEQGAGHMAEGYARAS  212
            G +   +++  LGV  +FG PGG ILP+ DA+  S    +VL RHEQGA   A+GYARA+
Sbjct  1    GAEALADVLKALGVDTVFGVPGGHILPLLDALAKSPGIRYVLTRHEQGAAFAADGYARAT  60

Query  213  GKPGVVLVTSGPGATNVITPMQDALSDGTPMVVFCGQVPTSSIGTDSFQ-EADVVGISRA  271
            GKPGVVLVTSGPGATN +T + +A  D  P++V  GQ P S +G  + Q E D + + R 
Sbjct  61   GKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVGRGALQQELDQLALFRP  120

Query  272  CTKWNVMVKSVAELPRRIQEAFEIATSGRPGPVLVDLPKDI  312
             TKW V V S  E+P  ++ AF  A SGRPGPV +++P D+
Sbjct  121  VTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDV  161


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 157 bits (399),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 66/147 (45%), Positives = 87/147 (59%), Gaps = 11/147 (7%)

Query  350  IDRVARLVNIAQKPVLYVGQGLLARPDGPKVLKELADKACIPVTTTLQGLGGFDELDPKA  409
            I++ A L+  A++PV+  G G+  R    + L+ELA+K  IPV TTL G G F E  P  
Sbjct  1    IEKAAELLKKAKRPVILAGGGV-RRSGASEELRELAEKLGIPVVTTLMGKGAFPEDHPLY  59

Query  410  LHMLGMHGSAYANMAMQEADLIIAVGARFDD-RVTGNLSKFAPQAKLAASEKRGGIVHFE  468
            L MLGMHG+  AN A++EADL++AVGARFDD R TG L +FAP AK         I+H +
Sbjct  60   LGMLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAK---------IIHID  110

Query  469  IMPKNINKVVQANEAVEGDCAENIRLL  495
            I P  I K    +  + GD  E +  L
Sbjct  111  IDPAEIGKNYPVDVPIVGDAKETLEAL  137



Lambda      K        H        a         alpha
   0.319    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 957490016


Query= TCONS_00022413

Length=496


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00022414

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00027123

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00022415

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00022417

Length=1009
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372833 pfam13945, NST1, Salt tolerance down-regulator. NST1 i...  250     6e-78


>CDD:372833 pfam13945, NST1, Salt tolerance down-regulator.  NST1 is a family 
of proteins that seem to be involved, directly or indirectly, 
in the salt sensitivity of some cellular functions in 
yeast. It does this without affecting sodium accumulation. 
It negatively affects salt-tolerance through an interaction 
with the splicing factor Msl1p. This interaction stresses the 
importance of efficient RNA processing under salt stress conditions.
Length=186

 Score = 250 bits (641),  Expect = 6e-78, Method: Composition-based stats.
 Identities = 106/195 (54%), Positives = 125/195 (64%), Gaps = 17/195 (9%)

Query  108  EQPANGDVYPKDGQDSTE-AHIDSQNPQGPNGTESSQKSTGRKSKKKKGKKGRNGSHAQG  166
            +   + +      Q+  +   +D  +    +  +S +K   +              +   
Sbjct  1    QDDQSNNNSQNQQQNQHDNNTVDHHSQVNSSKRKSKKKKKKKNRNGS---------NNNN  51

Query  167  DETSTPMSTPS-----VSMSHPL--PPPLSSHLASHNILKPAKNRSIWNTSTQEERENIK  219
            DE+ST  STPS      S + P+   PPLSS  AS +  K  K+RSIWNTSTQEERENIK
Sbjct  52   DESSTSQSTPSPFAITTSSTRPVSNNPPLSSSAASRSAHKNNKDRSIWNTSTQEERENIK  111

Query  220  TFWLELGEEERRQLVKVEKDAVLKKMKEQQRHSCSCTVCGRKRTAIEEELEVLYDAYYEE  279
             FWL LGEEERR LVKVEK+AVLKKMKEQQ+HSCSCTVCGRKRTAIEEELEVLYDAYYEE
Sbjct  112  EFWLSLGEEERRSLVKVEKEAVLKKMKEQQKHSCSCTVCGRKRTAIEEELEVLYDAYYEE  171

Query  280  LEQYANHNQGSFEKG  294
            LEQYAN NQ SFE G
Sbjct  172  LEQYANMNQKSFENG  186



Lambda      K        H        a         alpha
   0.307    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1292694788


Query= TCONS_00022416

Length=1017
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372833 pfam13945, NST1, Salt tolerance down-regulator. NST1 i...  250     8e-78


>CDD:372833 pfam13945, NST1, Salt tolerance down-regulator.  NST1 is a family 
of proteins that seem to be involved, directly or indirectly, 
in the salt sensitivity of some cellular functions in 
yeast. It does this without affecting sodium accumulation. 
It negatively affects salt-tolerance through an interaction 
with the splicing factor Msl1p. This interaction stresses the 
importance of efficient RNA processing under salt stress conditions.
Length=186

 Score = 250 bits (640),  Expect = 8e-78, Method: Composition-based stats.
 Identities = 106/195 (54%), Positives = 125/195 (64%), Gaps = 17/195 (9%)

Query  108  EQPANGDVYPKDGQDSTE-AHIDSQNPQGPNGTESSQKSTGRKSKKKKGKKGRNGSHAQG  166
            +   + +      Q+  +   +D  +    +  +S +K   +              +   
Sbjct  1    QDDQSNNNSQNQQQNQHDNNTVDHHSQVNSSKRKSKKKKKKKNRNGS---------NNNN  51

Query  167  DETSTPMSTPS-----VSMSHPL--PPPLSSHLASHNILKPAKNRSIWNTSTQEERENIK  219
            DE+ST  STPS      S + P+   PPLSS  AS +  K  K+RSIWNTSTQEERENIK
Sbjct  52   DESSTSQSTPSPFAITTSSTRPVSNNPPLSSSAASRSAHKNNKDRSIWNTSTQEERENIK  111

Query  220  TFWLELGEEERRQLVKVEKDAVLKKMKEQQRHSCSCTVCGRKRTAIEEELEVLYDAYYEE  279
             FWL LGEEERR LVKVEK+AVLKKMKEQQ+HSCSCTVCGRKRTAIEEELEVLYDAYYEE
Sbjct  112  EFWLSLGEEERRSLVKVEKEAVLKKMKEQQKHSCSCTVCGRKRTAIEEELEVLYDAYYEE  171

Query  280  LEQYANHNQGSFEKG  294
            LEQYAN NQ SFE G
Sbjct  172  LEQYANMNQKSFENG  186



Lambda      K        H        a         alpha
   0.306    0.125    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1304021796


Query= TCONS_00022418

Length=732


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 928386976


Query= TCONS_00022419

Length=732


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 928386976


Query= TCONS_00022421

Length=1192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372833 pfam13945, NST1, Salt tolerance down-regulator. NST1 i...  254     9e-79


>CDD:372833 pfam13945, NST1, Salt tolerance down-regulator.  NST1 is a family 
of proteins that seem to be involved, directly or indirectly, 
in the salt sensitivity of some cellular functions in 
yeast. It does this without affecting sodium accumulation. 
It negatively affects salt-tolerance through an interaction 
with the splicing factor Msl1p. This interaction stresses the 
importance of efficient RNA processing under salt stress conditions.
Length=186

 Score = 254 bits (651),  Expect = 9e-79, Method: Composition-based stats.
 Identities = 106/195 (54%), Positives = 125/195 (64%), Gaps = 17/195 (9%)

Query  108  EQPANGDVYPKDGQDSTE-AHIDSQNPQGPNGTESSQKSTGRKSKKKKGKKGRNGSHAQG  166
            +   + +      Q+  +   +D  +    +  +S +K   +              +   
Sbjct  1    QDDQSNNNSQNQQQNQHDNNTVDHHSQVNSSKRKSKKKKKKKNRNGS---------NNNN  51

Query  167  DETSTPMSTPS-----VSMSHPL--PPPLSSHLASHNILKPAKNRSIWNTSTQEERENIK  219
            DE+ST  STPS      S + P+   PPLSS  AS +  K  K+RSIWNTSTQEERENIK
Sbjct  52   DESSTSQSTPSPFAITTSSTRPVSNNPPLSSSAASRSAHKNNKDRSIWNTSTQEERENIK  111

Query  220  TFWLELGEEERRQLVKVEKDAVLKKMKEQQRHSCSCTVCGRKRTAIEEELEVLYDAYYEE  279
             FWL LGEEERR LVKVEK+AVLKKMKEQQ+HSCSCTVCGRKRTAIEEELEVLYDAYYEE
Sbjct  112  EFWLSLGEEERRSLVKVEKEAVLKKMKEQQKHSCSCTVCGRKRTAIEEELEVLYDAYYEE  171

Query  280  LEQYANHNQGSFEKG  294
            LEQYAN NQ SFE G
Sbjct  172  LEQYANMNQKSFENG  186



Lambda      K        H        a         alpha
   0.307    0.126    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1528880610


Query= TCONS_00022420

Length=1158
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372833 pfam13945, NST1, Salt tolerance down-regulator. NST1 i...  253     3e-78


>CDD:372833 pfam13945, NST1, Salt tolerance down-regulator.  NST1 is a family 
of proteins that seem to be involved, directly or indirectly, 
in the salt sensitivity of some cellular functions in 
yeast. It does this without affecting sodium accumulation. 
It negatively affects salt-tolerance through an interaction 
with the splicing factor Msl1p. This interaction stresses the 
importance of efficient RNA processing under salt stress conditions.
Length=186

 Score = 253 bits (647),  Expect = 3e-78, Method: Composition-based stats.
 Identities = 106/195 (54%), Positives = 125/195 (64%), Gaps = 17/195 (9%)

Query  108  EQPANGDVYPKDGQDSTE-AHIDSQNPQGPNGTESSQKSTGRKSKKKKGKKGRNGSHAQG  166
            +   + +      Q+  +   +D  +    +  +S +K   +              +   
Sbjct  1    QDDQSNNNSQNQQQNQHDNNTVDHHSQVNSSKRKSKKKKKKKNRNGS---------NNNN  51

Query  167  DETSTPMSTPS-----VSMSHPL--PPPLSSHLASHNILKPAKNRSIWNTSTQEERENIK  219
            DE+ST  STPS      S + P+   PPLSS  AS +  K  K+RSIWNTSTQEERENIK
Sbjct  52   DESSTSQSTPSPFAITTSSTRPVSNNPPLSSSAASRSAHKNNKDRSIWNTSTQEERENIK  111

Query  220  TFWLELGEEERRQLVKVEKDAVLKKMKEQQRHSCSCTVCGRKRTAIEEELEVLYDAYYEE  279
             FWL LGEEERR LVKVEK+AVLKKMKEQQ+HSCSCTVCGRKRTAIEEELEVLYDAYYEE
Sbjct  112  EFWLSLGEEERRSLVKVEKEAVLKKMKEQQKHSCSCTVCGRKRTAIEEELEVLYDAYYEE  171

Query  280  LEQYANHNQGSFEKG  294
            LEQYAN NQ SFE G
Sbjct  172  LEQYANMNQKSFENG  186



Lambda      K        H        a         alpha
   0.307    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0688    0.140     1.90     42.6     43.6 

Effective search space used: 1481408518


Query= TCONS_00027125

Length=1071
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372833 pfam13945, NST1, Salt tolerance down-regulator. NST1 i...  254     7e-79


>CDD:372833 pfam13945, NST1, Salt tolerance down-regulator.  NST1 is a family 
of proteins that seem to be involved, directly or indirectly, 
in the salt sensitivity of some cellular functions in 
yeast. It does this without affecting sodium accumulation. 
It negatively affects salt-tolerance through an interaction 
with the splicing factor Msl1p. This interaction stresses the 
importance of efficient RNA processing under salt stress conditions.
Length=186

 Score = 254 bits (650),  Expect = 7e-79, Method: Composition-based stats.
 Identities = 106/195 (54%), Positives = 125/195 (64%), Gaps = 17/195 (9%)

Query  108  EQPANGDVYPKDGQDSTE-AHIDSQNPQGPNGTESSQKSTGRKSKKKKGKKGRNGSHAQG  166
            +   + +      Q+  +   +D  +    +  +S +K   +              +   
Sbjct  1    QDDQSNNNSQNQQQNQHDNNTVDHHSQVNSSKRKSKKKKKKKNRNGS---------NNNN  51

Query  167  DETSTPMSTPS-----VSMSHPL--PPPLSSHLASHNILKPAKNRSIWNTSTQEERENIK  219
            DE+ST  STPS      S + P+   PPLSS  AS +  K  K+RSIWNTSTQEERENIK
Sbjct  52   DESSTSQSTPSPFAITTSSTRPVSNNPPLSSSAASRSAHKNNKDRSIWNTSTQEERENIK  111

Query  220  TFWLELGEEERRQLVKVEKDAVLKKMKEQQRHSCSCTVCGRKRTAIEEELEVLYDAYYEE  279
             FWL LGEEERR LVKVEK+AVLKKMKEQQ+HSCSCTVCGRKRTAIEEELEVLYDAYYEE
Sbjct  112  EFWLSLGEEERRSLVKVEKEAVLKKMKEQQKHSCSCTVCGRKRTAIEEELEVLYDAYYEE  171

Query  280  LEQYANHNQGSFEKG  294
            LEQYAN NQ SFE G
Sbjct  172  LEQYANMNQKSFENG  186



Lambda      K        H        a         alpha
   0.307    0.125    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1380479100


Query= TCONS_00027124

Length=1036
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372833 pfam13945, NST1, Salt tolerance down-regulator. NST1 i...  252     2e-78


>CDD:372833 pfam13945, NST1, Salt tolerance down-regulator.  NST1 is a family 
of proteins that seem to be involved, directly or indirectly, 
in the salt sensitivity of some cellular functions in 
yeast. It does this without affecting sodium accumulation. 
It negatively affects salt-tolerance through an interaction 
with the splicing factor Msl1p. This interaction stresses the 
importance of efficient RNA processing under salt stress conditions.
Length=186

 Score = 252 bits (645),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 106/195 (54%), Positives = 125/195 (64%), Gaps = 17/195 (9%)

Query  108  EQPANGDVYPKDGQDSTE-AHIDSQNPQGPNGTESSQKSTGRKSKKKKGKKGRNGSHAQG  166
            +   + +      Q+  +   +D  +    +  +S +K   +              +   
Sbjct  1    QDDQSNNNSQNQQQNQHDNNTVDHHSQVNSSKRKSKKKKKKKNRNGS---------NNNN  51

Query  167  DETSTPMSTPS-----VSMSHPL--PPPLSSHLASHNILKPAKNRSIWNTSTQEERENIK  219
            DE+ST  STPS      S + P+   PPLSS  AS +  K  K+RSIWNTSTQEERENIK
Sbjct  52   DESSTSQSTPSPFAITTSSTRPVSNNPPLSSSAASRSAHKNNKDRSIWNTSTQEERENIK  111

Query  220  TFWLELGEEERRQLVKVEKDAVLKKMKEQQRHSCSCTVCGRKRTAIEEELEVLYDAYYEE  279
             FWL LGEEERR LVKVEK+AVLKKMKEQQ+HSCSCTVCGRKRTAIEEELEVLYDAYYEE
Sbjct  112  EFWLSLGEEERRSLVKVEKEAVLKKMKEQQKHSCSCTVCGRKRTAIEEELEVLYDAYYEE  171

Query  280  LEQYANHNQGSFEKG  294
            LEQYAN NQ SFE G
Sbjct  172  LEQYANMNQKSFENG  186



Lambda      K        H        a         alpha
   0.307    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1330923440


Query= TCONS_00022422

Length=693


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 884874000


Query= TCONS_00022423

Length=1197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372833 pfam13945, NST1, Salt tolerance down-regulator. NST1 i...  255     6e-79


>CDD:372833 pfam13945, NST1, Salt tolerance down-regulator.  NST1 is a family 
of proteins that seem to be involved, directly or indirectly, 
in the salt sensitivity of some cellular functions in 
yeast. It does this without affecting sodium accumulation. 
It negatively affects salt-tolerance through an interaction 
with the splicing factor Msl1p. This interaction stresses the 
importance of efficient RNA processing under salt stress conditions.
Length=186

 Score = 255 bits (653),  Expect = 6e-79, Method: Composition-based stats.
 Identities = 106/195 (54%), Positives = 125/195 (64%), Gaps = 17/195 (9%)

Query  108  EQPANGDVYPKDGQDSTE-AHIDSQNPQGPNGTESSQKSTGRKSKKKKGKKGRNGSHAQG  166
            +   + +      Q+  +   +D  +    +  +S +K   +              +   
Sbjct  1    QDDQSNNNSQNQQQNQHDNNTVDHHSQVNSSKRKSKKKKKKKNRNGS---------NNNN  51

Query  167  DETSTPMSTPS-----VSMSHPL--PPPLSSHLASHNILKPAKNRSIWNTSTQEERENIK  219
            DE+ST  STPS      S + P+   PPLSS  AS +  K  K+RSIWNTSTQEERENIK
Sbjct  52   DESSTSQSTPSPFAITTSSTRPVSNNPPLSSSAASRSAHKNNKDRSIWNTSTQEERENIK  111

Query  220  TFWLELGEEERRQLVKVEKDAVLKKMKEQQRHSCSCTVCGRKRTAIEEELEVLYDAYYEE  279
             FWL LGEEERR LVKVEK+AVLKKMKEQQ+HSCSCTVCGRKRTAIEEELEVLYDAYYEE
Sbjct  112  EFWLSLGEEERRSLVKVEKEAVLKKMKEQQKHSCSCTVCGRKRTAIEEELEVLYDAYYEE  171

Query  280  LEQYANHNQGSFEKG  294
            LEQYAN NQ SFE G
Sbjct  172  LEQYANMNQKSFENG  186



Lambda      K        H        a         alpha
   0.308    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1535861800


Query= TCONS_00022424

Length=676


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 859802570


Query= TCONS_00027126

Length=693


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 884874000


Query= TCONS_00022425

Length=1153
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372833 pfam13945, NST1, Salt tolerance down-regulator. NST1 i...  252     5e-78


>CDD:372833 pfam13945, NST1, Salt tolerance down-regulator.  NST1 is a family 
of proteins that seem to be involved, directly or indirectly, 
in the salt sensitivity of some cellular functions in 
yeast. It does this without affecting sodium accumulation. 
It negatively affects salt-tolerance through an interaction 
with the splicing factor Msl1p. This interaction stresses the 
importance of efficient RNA processing under salt stress conditions.
Length=186

 Score = 252 bits (645),  Expect = 5e-78, Method: Composition-based stats.
 Identities = 106/195 (54%), Positives = 125/195 (64%), Gaps = 17/195 (9%)

Query  108  EQPANGDVYPKDGQDSTE-AHIDSQNPQGPNGTESSQKSTGRKSKKKKGKKGRNGSHAQG  166
            +   + +      Q+  +   +D  +    +  +S +K   +              +   
Sbjct  1    QDDQSNNNSQNQQQNQHDNNTVDHHSQVNSSKRKSKKKKKKKNRNGS---------NNNN  51

Query  167  DETSTPMSTPS-----VSMSHPL--PPPLSSHLASHNILKPAKNRSIWNTSTQEERENIK  219
            DE+ST  STPS      S + P+   PPLSS  AS +  K  K+RSIWNTSTQEERENIK
Sbjct  52   DESSTSQSTPSPFAITTSSTRPVSNNPPLSSSAASRSAHKNNKDRSIWNTSTQEERENIK  111

Query  220  TFWLELGEEERRQLVKVEKDAVLKKMKEQQRHSCSCTVCGRKRTAIEEELEVLYDAYYEE  279
             FWL LGEEERR LVKVEK+AVLKKMKEQQ+HSCSCTVCGRKRTAIEEELEVLYDAYYEE
Sbjct  112  EFWLSLGEEERRSLVKVEKEAVLKKMKEQQKHSCSCTVCGRKRTAIEEELEVLYDAYYEE  171

Query  280  LEQYANHNQGSFEKG  294
            LEQYAN NQ SFE G
Sbjct  172  LEQYANMNQKSFENG  186



Lambda      K        H        a         alpha
   0.307    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1474427328


Query= TCONS_00022426

Length=226


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00022427

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00022428

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00022429

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00027128

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00022430

Length=709


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 908470640


Query= TCONS_00022431

Length=709


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 908470640


Query= TCONS_00027129

Length=709


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 908470640


Query= TCONS_00022432

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00027130

Length=816
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460339 pfam01805, Surp, Surp module. This domain is also know...  66.0    3e-14


>CDD:460339 pfam01805, Surp, Surp module.  This domain is also known as the 
SWAP domain. SWAP stands for Suppressor-of-White-APricot. 
It has been suggested that these domains may be RNA binding.
Length=52

 Score = 66.0 bits (162),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 23/54 (43%), Positives = 33/54 (61%), Gaps = 2/54 (4%)

Query  337  RLIHKTLENLLNYGPEFEALLMSRPEVQRDEKWAWLWDPRSAGGVYYRWKLWDI  390
             +I KT + +   GPEFEALLM R   +R+ ++ +L+DP      YYRWKL + 
Sbjct  1    DIIKKTAQFVARNGPEFEALLMER--EERNPQFDFLFDPDDPLHAYYRWKLEEY  52



Lambda      K        H        a         alpha
   0.310    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050619744


Query= TCONS_00027131

Length=816
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460339 pfam01805, Surp, Surp module. This domain is also know...  66.0    3e-14


>CDD:460339 pfam01805, Surp, Surp module.  This domain is also known as the 
SWAP domain. SWAP stands for Suppressor-of-White-APricot. 
It has been suggested that these domains may be RNA binding.
Length=52

 Score = 66.0 bits (162),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 23/54 (43%), Positives = 33/54 (61%), Gaps = 2/54 (4%)

Query  337  RLIHKTLENLLNYGPEFEALLMSRPEVQRDEKWAWLWDPRSAGGVYYRWKLWDI  390
             +I KT + +   GPEFEALLM R   +R+ ++ +L+DP      YYRWKL + 
Sbjct  1    DIIKKTAQFVARNGPEFEALLMER--EERNPQFDFLFDPDDPLHAYYRWKLEEY  52



Lambda      K        H        a         alpha
   0.310    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050619744


Query= TCONS_00022433

Length=124
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396625 pfam02136, NTF2, Nuclear transport factor 2 (NTF2) dom...  118     3e-36


>CDD:396625 pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain.  This 
family includes the NTF2-like Delta-5-3-ketosteroid isomerase 
proteins.
Length=116

 Score = 118 bits (297),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 49/117 (42%), Positives = 69/117 (59%), Gaps = 4/117 (3%)

Query  7    IAQQFVQFYYQTFDTN-RQALASLY-RDHSMLTFETSS-VQGVSGIVEKLTSLPFQKVQH  63
            +   FVQ YY   D +  + L +LY  D SMLT   S  V G+  I E   SLPF ++QH
Sbjct  1    VGNAFVQQYYAALDAHDPEGLHALYADDASMLTPPGSDPVVGLEAINEFFDSLPFTRIQH  60

Query  64   QIATFDAQPSNTEGGIMVMVTGGLLVDEEQKPMSYSQTFQLLREGESYYVFNDMFRL  120
            +I + D+QP++ + G++VMVTG L VD +     +SQTF L  +   Y+V ND+FR 
Sbjct  61   KITSVDSQPASLKDGVLVMVTGELTVD-DFPRRRFSQTFLLAPQRGGYFVLNDIFRY  116



Lambda      K        H        a         alpha
   0.321    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00022434

Length=90
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396625 pfam02136, NTF2, Nuclear transport factor 2 (NTF2) dom...  83.2    5e-23


>CDD:396625 pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain.  This 
family includes the NTF2-like Delta-5-3-ketosteroid isomerase 
proteins.
Length=116

 Score = 83.2 bits (206),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 3/86 (3%)

Query  7   IAQQFVQFYYQTFDTN-RQALASLY-RDHSMLTFETSS-VQGVSGIVEKLTSLPFQKVQH  63
           +   FVQ YY   D +  + L +LY  D SMLT   S  V G+  I E   SLPF ++QH
Sbjct  1   VGNAFVQQYYAALDAHDPEGLHALYADDASMLTPPGSDPVVGLEAINEFFDSLPFTRIQH  60

Query  64  QIATFDAQPSNTEGGIMVMVTGGLLV  89
           +I + D+QP++ + G++VMVTG L V
Sbjct  61  KITSVDSQPASLKDGVLVMVTGELTV  86



Lambda      K        H        a         alpha
   0.322    0.132    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00022435

Length=90
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396625 pfam02136, NTF2, Nuclear transport factor 2 (NTF2) dom...  93.2    6e-27


>CDD:396625 pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain.  This 
family includes the NTF2-like Delta-5-3-ketosteroid isomerase 
proteins.
Length=116

 Score = 93.2 bits (232),  Expect = 6e-27, Method: Composition-based stats.
 Identities = 38/87 (44%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query  1    MLTFETSS-VQGVSGIVEKLTSLPFQKVQHQIATFDAQPSNTEGGIMVMVTGGLLVDEEQ  59
            MLT   S  V G+  I E   SLPF ++QH+I + D+QP++ + G++VMVTG L VD + 
Sbjct  31   MLTPPGSDPVVGLEAINEFFDSLPFTRIQHKITSVDSQPASLKDGVLVMVTGELTVD-DF  89

Query  60   KPMSYSQTFQLLREGESYYVFNDMFRL  86
                +SQTF L  +   Y+V ND+FR 
Sbjct  90   PRRRFSQTFLLAPQRGGYFVLNDIFRY  116



Lambda      K        H        a         alpha
   0.318    0.134    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00027132

Length=90
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396625 pfam02136, NTF2, Nuclear transport factor 2 (NTF2) dom...  93.2    6e-27


>CDD:396625 pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain.  This 
family includes the NTF2-like Delta-5-3-ketosteroid isomerase 
proteins.
Length=116

 Score = 93.2 bits (232),  Expect = 6e-27, Method: Composition-based stats.
 Identities = 38/87 (44%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query  1    MLTFETSS-VQGVSGIVEKLTSLPFQKVQHQIATFDAQPSNTEGGIMVMVTGGLLVDEEQ  59
            MLT   S  V G+  I E   SLPF ++QH+I + D+QP++ + G++VMVTG L VD + 
Sbjct  31   MLTPPGSDPVVGLEAINEFFDSLPFTRIQHKITSVDSQPASLKDGVLVMVTGELTVD-DF  89

Query  60   KPMSYSQTFQLLREGESYYVFNDMFRL  86
                +SQTF L  +   Y+V ND+FR 
Sbjct  90   PRRRFSQTFLLAPQRGGYFVLNDIFRY  116



Lambda      K        H        a         alpha
   0.318    0.134    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00022436

Length=57
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396625 pfam02136, NTF2, Nuclear transport factor 2 (NTF2) dom...  61.2    6e-15


>CDD:396625 pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain.  This 
family includes the NTF2-like Delta-5-3-ketosteroid isomerase 
proteins.
Length=116

 Score = 61.2 bits (149),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 27/58 (47%), Positives = 39/58 (67%), Gaps = 1/58 (2%)

Query  1   MLTFETSS-VQGVSGIVEKLTSLPFQKVQHQIATFDAQPSNTEGGIMVMVTGGLLVDE  57
           MLT   S  V G+  I E   SLPF ++QH+I + D+QP++ + G++VMVTG L VD+
Sbjct  31  MLTPPGSDPVVGLEAINEFFDSLPFTRIQHKITSVDSQPASLKDGVLVMVTGELTVDD  88



Lambda      K        H        a         alpha
   0.315    0.131    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00022437

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431195 pfam10281, Ish1, Putative stress-responsive nuclear en...  55.9    4e-11


>CDD:431195 pfam10281, Ish1, Putative stress-responsive nuclear envelope 
protein.  This entry represents a repeat found in the fungal 
protein Ish1, a putative stress-responsive nuclear envelope 
protein.
Length=37

 Score = 55.9 bits (136),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 29/37 (78%), Gaps = 1/37 (3%)

Query  214  FNAWSDSDLKKFLDEHNVKV-PQGSKRNELIALARKH  249
            F+ WSDSDLK +LD H + V PQGS R+EL+ LARK+
Sbjct  1    FDTWSDSDLKAWLDSHGIPVSPQGSTRDELLKLARKN  37



Lambda      K        H        a         alpha
   0.312    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00022438

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431195 pfam10281, Ish1, Putative stress-responsive nuclear en...  55.9    4e-11


>CDD:431195 pfam10281, Ish1, Putative stress-responsive nuclear envelope 
protein.  This entry represents a repeat found in the fungal 
protein Ish1, a putative stress-responsive nuclear envelope 
protein.
Length=37

 Score = 55.9 bits (136),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 29/37 (78%), Gaps = 1/37 (3%)

Query  214  FNAWSDSDLKKFLDEHNVKV-PQGSKRNELIALARKH  249
            F+ WSDSDLK +LD H + V PQGS R+EL+ LARK+
Sbjct  1    FDTWSDSDLKAWLDSHGIPVSPQGSTRDELLKLARKN  37



Lambda      K        H        a         alpha
   0.312    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00022439

Length=359
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431195 pfam10281, Ish1, Putative stress-responsive nuclear en...  54.7    6e-11


>CDD:431195 pfam10281, Ish1, Putative stress-responsive nuclear envelope 
protein.  This entry represents a repeat found in the fungal 
protein Ish1, a putative stress-responsive nuclear envelope 
protein.
Length=37

 Score = 54.7 bits (133),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 29/37 (78%), Gaps = 1/37 (3%)

Query  214  FNAWSDSDLKKFLDEHNVKV-PQGSKRNELIALARKH  249
            F+ WSDSDLK +LD H + V PQGS R+EL+ LARK+
Sbjct  1    FDTWSDSDLKAWLDSHGIPVSPQGSTRDELLKLARKN  37



Lambda      K        H        a         alpha
   0.313    0.125    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00027133

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00022440

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431195 pfam10281, Ish1, Putative stress-responsive nuclear en...  55.9    4e-11


>CDD:431195 pfam10281, Ish1, Putative stress-responsive nuclear envelope 
protein.  This entry represents a repeat found in the fungal 
protein Ish1, a putative stress-responsive nuclear envelope 
protein.
Length=37

 Score = 55.9 bits (136),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 29/37 (78%), Gaps = 1/37 (3%)

Query  214  FNAWSDSDLKKFLDEHNVKV-PQGSKRNELIALARKH  249
            F+ WSDSDLK +LD H + V PQGS R+EL+ LARK+
Sbjct  1    FDTWSDSDLKAWLDSHGIPVSPQGSTRDELLKLARKN  37



Lambda      K        H        a         alpha
   0.312    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00022441

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431195 pfam10281, Ish1, Putative stress-responsive nuclear en...  55.9    4e-11


>CDD:431195 pfam10281, Ish1, Putative stress-responsive nuclear envelope 
protein.  This entry represents a repeat found in the fungal 
protein Ish1, a putative stress-responsive nuclear envelope 
protein.
Length=37

 Score = 55.9 bits (136),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 29/37 (78%), Gaps = 1/37 (3%)

Query  214  FNAWSDSDLKKFLDEHNVKV-PQGSKRNELIALARKH  249
            F+ WSDSDLK +LD H + V PQGS R+EL+ LARK+
Sbjct  1    FDTWSDSDLKAWLDSHGIPVSPQGSTRDELLKLARKN  37



Lambda      K        H        a         alpha
   0.312    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00022442

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431195 pfam10281, Ish1, Putative stress-responsive nuclear en...  56.7    2e-11


>CDD:431195 pfam10281, Ish1, Putative stress-responsive nuclear envelope 
protein.  This entry represents a repeat found in the fungal 
protein Ish1, a putative stress-responsive nuclear envelope 
protein.
Length=37

 Score = 56.7 bits (138),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 29/37 (78%), Gaps = 1/37 (3%)

Query  233  FNAWSDSDLKKFLDEHNVKV-PQGSKRNELIALARKH  268
            F+ WSDSDLK +LD H + V PQGS R+EL+ LARK+
Sbjct  1    FDTWSDSDLKAWLDSHGIPVSPQGSTRDELLKLARKN  37


 Score = 55.5 bits (135),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 29/37 (78%), Gaps = 1/37 (3%)

Query  112  FDTWSDSHLKAFLDRHGVPV-PQPRRRDVLLKAAREN  147
            FDTWSDS LKA+LD HG+PV PQ   RD LLK AR+N
Sbjct  1    FDTWSDSDLKAWLDSHGIPVSPQGSTRDELLKLARKN  37



Lambda      K        H        a         alpha
   0.312    0.124    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00022443

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.134    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00022444

Length=543


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684357832


Query= TCONS_00022446

Length=808
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  135     8e-37
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.2    1e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 135 bits (343),  Expect = 8e-37, Method: Composition-based stats.
 Identities = 79/321 (25%), Positives = 115/321 (36%), Gaps = 107/321 (33%)

Query  486  YHVKQNLGKGMFSSVVRATDAKTGGLVAIKII---RQNDTMRKAGLKEIGILEQLREADP  542
            Y V + LG G F +V +A    TG +VAIK I   +      K  L+EI IL++L     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNH---  57

Query  543  EDKKHVIRFERHFDHKGHLCMVFENLSMNLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  602
                +++R    F+ K +L +V E   +    +          + R  +   +QI  GL 
Sbjct  58   ---PNIVRLYDAFEDKDNLYLVLE--YVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE  112

Query  603  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSRFYRAPEIILGI  662
                                            S S  T    TP+     Y APE++ G 
Sbjct  113  --------------------------------SGSSLTTFVGTPW-----YMAPEVLGGN  135

Query  663  PYDHAIDVWSIGCTLFELYTGKILFTGRNNNQMLRSIMECRGKYPPKLLRKGTLTHQHFD  722
            PY   +DVWS+GC L+EL TGK  F G N N++   I+                  Q + 
Sbjct  136  PYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII-----------------DQPYA  178

Query  723  DMLNFHSTEEDKVTGRLVTKVLDFKKPTRDLRTRLMGKNAKGMTDGEAKELALFVDLLER  782
                  +  E                                    EAK      DLL++
Sbjct  179  FPELPSNLSE------------------------------------EAK------DLLKK  196

Query  783  CLSLNPEKRCTPAEALRHPFI  803
             L  +P KR T  +AL+HP+ 
Sbjct  197  LLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.2 bits (217),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 102/227 (45%), Gaps = 31/227 (14%)

Query  492  LGKGMFSSVVRAT----DAKTGGLVAIKIIRQNDT--MRKAGLKEIGILEQLREADPEDK  545
            LG+G F  V + T       T   VA+K +++      R+  L+E  I+++L      D 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKL------DH  60

Query  546  KHVIRFERHFDHKGHLCMVFENLSM---NLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  602
             ++++          L +V E   M   +L + L+K      L L+ + + A QI  G+ 
Sbjct  61   PNIVKLLGVCTQGEPLYIVTE--YMPGGDLLDFLRK--HKRKLTLKDLLSMALQIAKGME  116

Query  603  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSR-------FYRA  655
             L   N +H DL   N LV+E   V K+ D G +    D++   Y   R        + A
Sbjct  117  YLESKNFVHRDLAARNCLVSENLVV-KISDFGLSRDIYDDD---YYRKRGGGKLPIKWMA  172

Query  656  PEIILGIPYDHAIDVWSIGCTLFELYT-GKILFTGRNNNQMLRSIME  701
            PE +    +    DVWS G  L+E++T G+  + G +N ++L  + +
Sbjct  173  PESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLED  219



Lambda      K        H        a         alpha
   0.314    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1038978528


Query= TCONS_00022445

Length=543


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684357832


Query= TCONS_00022447

Length=697
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  135     6e-37
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.2    1e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 135 bits (343),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 79/321 (25%), Positives = 115/321 (36%), Gaps = 107/321 (33%)

Query  375  YHVKQNLGKGMFSSVVRATDAKTGGLVAIKII---RQNDTMRKAGLKEIGILEQLREADP  431
            Y V + LG G F +V +A    TG +VAIK I   +      K  L+EI IL++L     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNH---  57

Query  432  EDKKHVIRFERHFDHKGHLCMVFENLSMNLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  491
                +++R    F+ K +L +V E   +    +          + R  +   +QI  GL 
Sbjct  58   ---PNIVRLYDAFEDKDNLYLVLE--YVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE  112

Query  492  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSRFYRAPEIILGI  551
                                            S S  T    TP+     Y APE++ G 
Sbjct  113  --------------------------------SGSSLTTFVGTPW-----YMAPEVLGGN  135

Query  552  PYDHAIDVWSIGCTLFELYTGKILFTGRNNNQMLRSIMECRGKYPPKLLRKGTLTHQHFD  611
            PY   +DVWS+GC L+EL TGK  F G N N++   I+                  Q + 
Sbjct  136  PYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII-----------------DQPYA  178

Query  612  DMLNFHSTEEDKVTGRLVTKVLDFKKPTRDLRTRLMGKNAKGMTDGEAKELALFVDLLER  671
                  +  E                                    EAK      DLL++
Sbjct  179  FPELPSNLSE------------------------------------EAK------DLLKK  196

Query  672  CLSLNPEKRCTPAEALRHPFI  692
             L  +P KR T  +AL+HP+ 
Sbjct  197  LLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.2 bits (217),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 102/227 (45%), Gaps = 31/227 (14%)

Query  381  LGKGMFSSVVRAT----DAKTGGLVAIKIIRQNDT--MRKAGLKEIGILEQLREADPEDK  434
            LG+G F  V + T       T   VA+K +++      R+  L+E  I+++L      D 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKL------DH  60

Query  435  KHVIRFERHFDHKGHLCMVFENLSM---NLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  491
             ++++          L +V E   M   +L + L+K      L L+ + + A QI  G+ 
Sbjct  61   PNIVKLLGVCTQGEPLYIVTE--YMPGGDLLDFLRK--HKRKLTLKDLLSMALQIAKGME  116

Query  492  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSR-------FYRA  544
             L   N +H DL   N LV+E   V K+ D G +    D++   Y   R        + A
Sbjct  117  YLESKNFVHRDLAARNCLVSENLVV-KISDFGLSRDIYDDD---YYRKRGGGKLPIKWMA  172

Query  545  PEIILGIPYDHAIDVWSIGCTLFELYT-GKILFTGRNNNQMLRSIME  590
            PE +    +    DVWS G  L+E++T G+  + G +N ++L  + +
Sbjct  173  PESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLED  219



Lambda      K        H        a         alpha
   0.315    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 890773160


Query= TCONS_00027136

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  135     1e-37
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.2    8e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 135 bits (343),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 79/321 (25%), Positives = 115/321 (36%), Gaps = 107/321 (33%)

Query  174  YHVKQNLGKGMFSSVVRATDAKTGGLVAIKII---RQNDTMRKAGLKEIGILEQLREADP  230
            Y V + LG G F +V +A    TG +VAIK I   +      K  L+EI IL++L     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNH---  57

Query  231  EDKKHVIRFERHFDHKGHLCMVFENLSMNLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  290
                +++R    F+ K +L +V E   +    +          + R  +   +QI  GL 
Sbjct  58   ---PNIVRLYDAFEDKDNLYLVLE--YVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE  112

Query  291  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSRFYRAPEIILGI  350
                                            S S  T    TP+     Y APE++ G 
Sbjct  113  --------------------------------SGSSLTTFVGTPW-----YMAPEVLGGN  135

Query  351  PYDHAIDVWSIGCTLFELYTGKILFTGRNNNQMLRSIMECRGKYPPKLLRKGTLTHQHFD  410
            PY   +DVWS+GC L+EL TGK  F G N N++   I+                  Q + 
Sbjct  136  PYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII-----------------DQPYA  178

Query  411  DMLNFHSTEEDKVTGRLVTKVLDFKKPTRDLRTRLMGKNAKGMTDGEAKELALFVDLLER  470
                  +  E                                    EAK      DLL++
Sbjct  179  FPELPSNLSE------------------------------------EAK------DLLKK  196

Query  471  CLSLNPEKRCTPAEALRHPFI  491
             L  +P KR T  +AL+HP+ 
Sbjct  197  LLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.2 bits (217),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 27/225 (12%)

Query  180  LGKGMFSSVVRAT----DAKTGGLVAIKIIRQNDT--MRKAGLKEIGILEQLREADPEDK  233
            LG+G F  V + T       T   VA+K +++      R+  L+E  I+++L      D 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKL------DH  60

Query  234  KHVIRFERHFDHKGHLCMVFENLSM-NLREVLKKFGRDVGLNLRAIRAYAQQIFLGLSLL  292
             ++++          L +V E +   +L + L+K      L L+ + + A QI  G+  L
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRK--HKRKLTLKDLLSMALQIAKGMEYL  118

Query  293  RKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSR-------FYRAPE  345
               N +H DL   N LV+E   V K+ D G +    D++   Y   R        + APE
Sbjct  119  ESKNFVHRDLAARNCLVSENLVV-KISDFGLSRDIYDDD---YYRKRGGGKLPIKWMAPE  174

Query  346  IILGIPYDHAIDVWSIGCTLFELYT-GKILFTGRNNNQMLRSIME  389
             +    +    DVWS G  L+E++T G+  + G +N ++L  + +
Sbjct  175  SLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLED  219



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00022453

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  135     1e-37
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.2    8e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 135 bits (343),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 79/321 (25%), Positives = 115/321 (36%), Gaps = 107/321 (33%)

Query  174  YHVKQNLGKGMFSSVVRATDAKTGGLVAIKII---RQNDTMRKAGLKEIGILEQLREADP  230
            Y V + LG G F +V +A    TG +VAIK I   +      K  L+EI IL++L     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNH---  57

Query  231  EDKKHVIRFERHFDHKGHLCMVFENLSMNLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  290
                +++R    F+ K +L +V E   +    +          + R  +   +QI  GL 
Sbjct  58   ---PNIVRLYDAFEDKDNLYLVLE--YVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE  112

Query  291  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSRFYRAPEIILGI  350
                                            S S  T    TP+     Y APE++ G 
Sbjct  113  --------------------------------SGSSLTTFVGTPW-----YMAPEVLGGN  135

Query  351  PYDHAIDVWSIGCTLFELYTGKILFTGRNNNQMLRSIMECRGKYPPKLLRKGTLTHQHFD  410
            PY   +DVWS+GC L+EL TGK  F G N N++   I+                  Q + 
Sbjct  136  PYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII-----------------DQPYA  178

Query  411  DMLNFHSTEEDKVTGRLVTKVLDFKKPTRDLRTRLMGKNAKGMTDGEAKELALFVDLLER  470
                  +  E                                    EAK      DLL++
Sbjct  179  FPELPSNLSE------------------------------------EAK------DLLKK  196

Query  471  CLSLNPEKRCTPAEALRHPFI  491
             L  +P KR T  +AL+HP+ 
Sbjct  197  LLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.2 bits (217),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 27/225 (12%)

Query  180  LGKGMFSSVVRAT----DAKTGGLVAIKIIRQNDT--MRKAGLKEIGILEQLREADPEDK  233
            LG+G F  V + T       T   VA+K +++      R+  L+E  I+++L      D 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKL------DH  60

Query  234  KHVIRFERHFDHKGHLCMVFENLSM-NLREVLKKFGRDVGLNLRAIRAYAQQIFLGLSLL  292
             ++++          L +V E +   +L + L+K      L L+ + + A QI  G+  L
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRK--HKRKLTLKDLLSMALQIAKGMEYL  118

Query  293  RKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSR-------FYRAPE  345
               N +H DL   N LV+E   V K+ D G +    D++   Y   R        + APE
Sbjct  119  ESKNFVHRDLAARNCLVSENLVV-KISDFGLSRDIYDDD---YYRKRGGGKLPIKWMAPE  174

Query  346  IILGIPYDHAIDVWSIGCTLFELYT-GKILFTGRNNNQMLRSIME  389
             +    +    DVWS G  L+E++T G+  + G +N ++L  + +
Sbjct  175  SLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLED  219



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00022450

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  135     1e-37
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.2    8e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 135 bits (343),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 79/321 (25%), Positives = 115/321 (36%), Gaps = 107/321 (33%)

Query  174  YHVKQNLGKGMFSSVVRATDAKTGGLVAIKII---RQNDTMRKAGLKEIGILEQLREADP  230
            Y V + LG G F +V +A    TG +VAIK I   +      K  L+EI IL++L     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNH---  57

Query  231  EDKKHVIRFERHFDHKGHLCMVFENLSMNLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  290
                +++R    F+ K +L +V E   +    +          + R  +   +QI  GL 
Sbjct  58   ---PNIVRLYDAFEDKDNLYLVLE--YVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE  112

Query  291  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSRFYRAPEIILGI  350
                                            S S  T    TP+     Y APE++ G 
Sbjct  113  --------------------------------SGSSLTTFVGTPW-----YMAPEVLGGN  135

Query  351  PYDHAIDVWSIGCTLFELYTGKILFTGRNNNQMLRSIMECRGKYPPKLLRKGTLTHQHFD  410
            PY   +DVWS+GC L+EL TGK  F G N N++   I+                  Q + 
Sbjct  136  PYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII-----------------DQPYA  178

Query  411  DMLNFHSTEEDKVTGRLVTKVLDFKKPTRDLRTRLMGKNAKGMTDGEAKELALFVDLLER  470
                  +  E                                    EAK      DLL++
Sbjct  179  FPELPSNLSE------------------------------------EAK------DLLKK  196

Query  471  CLSLNPEKRCTPAEALRHPFI  491
             L  +P KR T  +AL+HP+ 
Sbjct  197  LLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.2 bits (217),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 27/225 (12%)

Query  180  LGKGMFSSVVRAT----DAKTGGLVAIKIIRQNDT--MRKAGLKEIGILEQLREADPEDK  233
            LG+G F  V + T       T   VA+K +++      R+  L+E  I+++L      D 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKL------DH  60

Query  234  KHVIRFERHFDHKGHLCMVFENLSM-NLREVLKKFGRDVGLNLRAIRAYAQQIFLGLSLL  292
             ++++          L +V E +   +L + L+K      L L+ + + A QI  G+  L
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRK--HKRKLTLKDLLSMALQIAKGMEYL  118

Query  293  RKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSR-------FYRAPE  345
               N +H DL   N LV+E   V K+ D G +    D++   Y   R        + APE
Sbjct  119  ESKNFVHRDLAARNCLVSENLVV-KISDFGLSRDIYDDD---YYRKRGGGKLPIKWMAPE  174

Query  346  IILGIPYDHAIDVWSIGCTLFELYT-GKILFTGRNNNQMLRSIME  389
             +    +    DVWS G  L+E++T G+  + G +N ++L  + +
Sbjct  175  SLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLED  219



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00022451

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  135     1e-37
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.2    8e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 135 bits (343),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 79/321 (25%), Positives = 115/321 (36%), Gaps = 107/321 (33%)

Query  174  YHVKQNLGKGMFSSVVRATDAKTGGLVAIKII---RQNDTMRKAGLKEIGILEQLREADP  230
            Y V + LG G F +V +A    TG +VAIK I   +      K  L+EI IL++L     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNH---  57

Query  231  EDKKHVIRFERHFDHKGHLCMVFENLSMNLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  290
                +++R    F+ K +L +V E   +    +          + R  +   +QI  GL 
Sbjct  58   ---PNIVRLYDAFEDKDNLYLVLE--YVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE  112

Query  291  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSRFYRAPEIILGI  350
                                            S S  T    TP+     Y APE++ G 
Sbjct  113  --------------------------------SGSSLTTFVGTPW-----YMAPEVLGGN  135

Query  351  PYDHAIDVWSIGCTLFELYTGKILFTGRNNNQMLRSIMECRGKYPPKLLRKGTLTHQHFD  410
            PY   +DVWS+GC L+EL TGK  F G N N++   I+                  Q + 
Sbjct  136  PYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII-----------------DQPYA  178

Query  411  DMLNFHSTEEDKVTGRLVTKVLDFKKPTRDLRTRLMGKNAKGMTDGEAKELALFVDLLER  470
                  +  E                                    EAK      DLL++
Sbjct  179  FPELPSNLSE------------------------------------EAK------DLLKK  196

Query  471  CLSLNPEKRCTPAEALRHPFI  491
             L  +P KR T  +AL+HP+ 
Sbjct  197  LLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.2 bits (217),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 27/225 (12%)

Query  180  LGKGMFSSVVRAT----DAKTGGLVAIKIIRQNDT--MRKAGLKEIGILEQLREADPEDK  233
            LG+G F  V + T       T   VA+K +++      R+  L+E  I+++L      D 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKL------DH  60

Query  234  KHVIRFERHFDHKGHLCMVFENLSM-NLREVLKKFGRDVGLNLRAIRAYAQQIFLGLSLL  292
             ++++          L +V E +   +L + L+K      L L+ + + A QI  G+  L
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRK--HKRKLTLKDLLSMALQIAKGMEYL  118

Query  293  RKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSR-------FYRAPE  345
               N +H DL   N LV+E   V K+ D G +    D++   Y   R        + APE
Sbjct  119  ESKNFVHRDLAARNCLVSENLVV-KISDFGLSRDIYDDD---YYRKRGGGKLPIKWMAPE  174

Query  346  IILGIPYDHAIDVWSIGCTLFELYT-GKILFTGRNNNQMLRSIME  389
             +    +    DVWS G  L+E++T G+  + G +N ++L  + +
Sbjct  175  SLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLED  219



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00022449

Length=808
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  135     8e-37
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.2    1e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 135 bits (343),  Expect = 8e-37, Method: Composition-based stats.
 Identities = 79/321 (25%), Positives = 115/321 (36%), Gaps = 107/321 (33%)

Query  486  YHVKQNLGKGMFSSVVRATDAKTGGLVAIKII---RQNDTMRKAGLKEIGILEQLREADP  542
            Y V + LG G F +V +A    TG +VAIK I   +      K  L+EI IL++L     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNH---  57

Query  543  EDKKHVIRFERHFDHKGHLCMVFENLSMNLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  602
                +++R    F+ K +L +V E   +    +          + R  +   +QI  GL 
Sbjct  58   ---PNIVRLYDAFEDKDNLYLVLE--YVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE  112

Query  603  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSRFYRAPEIILGI  662
                                            S S  T    TP+     Y APE++ G 
Sbjct  113  --------------------------------SGSSLTTFVGTPW-----YMAPEVLGGN  135

Query  663  PYDHAIDVWSIGCTLFELYTGKILFTGRNNNQMLRSIMECRGKYPPKLLRKGTLTHQHFD  722
            PY   +DVWS+GC L+EL TGK  F G N N++   I+                  Q + 
Sbjct  136  PYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII-----------------DQPYA  178

Query  723  DMLNFHSTEEDKVTGRLVTKVLDFKKPTRDLRTRLMGKNAKGMTDGEAKELALFVDLLER  782
                  +  E                                    EAK      DLL++
Sbjct  179  FPELPSNLSE------------------------------------EAK------DLLKK  196

Query  783  CLSLNPEKRCTPAEALRHPFI  803
             L  +P KR T  +AL+HP+ 
Sbjct  197  LLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.2 bits (217),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 102/227 (45%), Gaps = 31/227 (14%)

Query  492  LGKGMFSSVVRAT----DAKTGGLVAIKIIRQNDT--MRKAGLKEIGILEQLREADPEDK  545
            LG+G F  V + T       T   VA+K +++      R+  L+E  I+++L      D 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKL------DH  60

Query  546  KHVIRFERHFDHKGHLCMVFENLSM---NLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  602
             ++++          L +V E   M   +L + L+K      L L+ + + A QI  G+ 
Sbjct  61   PNIVKLLGVCTQGEPLYIVTE--YMPGGDLLDFLRK--HKRKLTLKDLLSMALQIAKGME  116

Query  603  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSR-------FYRA  655
             L   N +H DL   N LV+E   V K+ D G +    D++   Y   R        + A
Sbjct  117  YLESKNFVHRDLAARNCLVSENLVV-KISDFGLSRDIYDDD---YYRKRGGGKLPIKWMA  172

Query  656  PEIILGIPYDHAIDVWSIGCTLFELYT-GKILFTGRNNNQMLRSIME  701
            PE +    +    DVWS G  L+E++T G+  + G +N ++L  + +
Sbjct  173  PESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLED  219



Lambda      K        H        a         alpha
   0.314    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0633    0.140     1.90     42.6     43.6 

Effective search space used: 1038978528


Query= TCONS_00022448

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  135     1e-37
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.2    8e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 135 bits (343),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 79/321 (25%), Positives = 115/321 (36%), Gaps = 107/321 (33%)

Query  174  YHVKQNLGKGMFSSVVRATDAKTGGLVAIKII---RQNDTMRKAGLKEIGILEQLREADP  230
            Y V + LG G F +V +A    TG +VAIK I   +      K  L+EI IL++L     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNH---  57

Query  231  EDKKHVIRFERHFDHKGHLCMVFENLSMNLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  290
                +++R    F+ K +L +V E   +    +          + R  +   +QI  GL 
Sbjct  58   ---PNIVRLYDAFEDKDNLYLVLE--YVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE  112

Query  291  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSRFYRAPEIILGI  350
                                            S S  T    TP+     Y APE++ G 
Sbjct  113  --------------------------------SGSSLTTFVGTPW-----YMAPEVLGGN  135

Query  351  PYDHAIDVWSIGCTLFELYTGKILFTGRNNNQMLRSIMECRGKYPPKLLRKGTLTHQHFD  410
            PY   +DVWS+GC L+EL TGK  F G N N++   I+                  Q + 
Sbjct  136  PYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII-----------------DQPYA  178

Query  411  DMLNFHSTEEDKVTGRLVTKVLDFKKPTRDLRTRLMGKNAKGMTDGEAKELALFVDLLER  470
                  +  E                                    EAK      DLL++
Sbjct  179  FPELPSNLSE------------------------------------EAK------DLLKK  196

Query  471  CLSLNPEKRCTPAEALRHPFI  491
             L  +P KR T  +AL+HP+ 
Sbjct  197  LLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.2 bits (217),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 27/225 (12%)

Query  180  LGKGMFSSVVRAT----DAKTGGLVAIKIIRQNDT--MRKAGLKEIGILEQLREADPEDK  233
            LG+G F  V + T       T   VA+K +++      R+  L+E  I+++L      D 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKL------DH  60

Query  234  KHVIRFERHFDHKGHLCMVFENLSM-NLREVLKKFGRDVGLNLRAIRAYAQQIFLGLSLL  292
             ++++          L +V E +   +L + L+K      L L+ + + A QI  G+  L
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRK--HKRKLTLKDLLSMALQIAKGMEYL  118

Query  293  RKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSR-------FYRAPE  345
               N +H DL   N LV+E   V K+ D G +    D++   Y   R        + APE
Sbjct  119  ESKNFVHRDLAARNCLVSENLVV-KISDFGLSRDIYDDD---YYRKRGGGKLPIKWMAPE  174

Query  346  IILGIPYDHAIDVWSIGCTLFELYT-GKILFTGRNNNQMLRSIME  389
             +    +    DVWS G  L+E++T G+  + G +N ++L  + +
Sbjct  175  SLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLED  219



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00022452

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  135     4e-38
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            85.6    2e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 135 bits (343),  Expect = 4e-38, Method: Composition-based stats.
 Identities = 79/321 (25%), Positives = 115/321 (36%), Gaps = 107/321 (33%)

Query  113  YHVKQNLGKGMFSSVVRATDAKTGGLVAIKII---RQNDTMRKAGLKEIGILEQLREADP  169
            Y V + LG G F +V +A    TG +VAIK I   +      K  L+EI IL++L     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNH---  57

Query  170  EDKKHVIRFERHFDHKGHLCMVFENLSMNLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  229
                +++R    F+ K +L +V E   +    +          + R  +   +QI  GL 
Sbjct  58   ---PNIVRLYDAFEDKDNLYLVLE--YVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE  112

Query  230  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSRFYRAPEIILGI  289
                                            S S  T    TP+     Y APE++ G 
Sbjct  113  --------------------------------SGSSLTTFVGTPW-----YMAPEVLGGN  135

Query  290  PYDHAIDVWSIGCTLFELYTGKILFTGRNNNQMLRSIMECRGKYPPKLLRKGTLTHQHFD  349
            PY   +DVWS+GC L+EL TGK  F G N N++   I+                  Q + 
Sbjct  136  PYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII-----------------DQPYA  178

Query  350  DMLNFHSTEEDKVTGRLVTKVLDFKKPTRDLRTRLMGKNAKGMTDGEAKELALFVDLLER  409
                  +  E                                    EAK      DLL++
Sbjct  179  FPELPSNLSE------------------------------------EAK------DLLKK  196

Query  410  CLSLNPEKRCTPAEALRHPFI  430
             L  +P KR T  +AL+HP+ 
Sbjct  197  LLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 85.6 bits (213),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 27/225 (12%)

Query  119  LGKGMFSSVVRAT----DAKTGGLVAIKIIRQNDT--MRKAGLKEIGILEQLREADPEDK  172
            LG+G F  V + T       T   VA+K +++      R+  L+E  I+++L      D 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKL------DH  60

Query  173  KHVIRFERHFDHKGHLCMVFENLSM-NLREVLKKFGRDVGLNLRAIRAYAQQIFLGLSLL  231
             ++++          L +V E +   +L + L+K      L L+ + + A QI  G+  L
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRK--HKRKLTLKDLLSMALQIAKGMEYL  118

Query  232  RKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSR-------FYRAPE  284
               N +H DL   N LV+E   V K+ D G +    D++   Y   R        + APE
Sbjct  119  ESKNFVHRDLAARNCLVSENLVV-KISDFGLSRDIYDDD---YYRKRGGGKLPIKWMAPE  174

Query  285  IILGIPYDHAIDVWSIGCTLFELYT-GKILFTGRNNNQMLRSIME  328
             +    +    DVWS G  L+E++T G+  + G +N ++L  + +
Sbjct  175  SLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLED  219



Lambda      K        H        a         alpha
   0.319    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 529127880


Query= TCONS_00022455

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  135     1e-37
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.2    8e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 135 bits (343),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 79/321 (25%), Positives = 115/321 (36%), Gaps = 107/321 (33%)

Query  174  YHVKQNLGKGMFSSVVRATDAKTGGLVAIKII---RQNDTMRKAGLKEIGILEQLREADP  230
            Y V + LG G F +V +A    TG +VAIK I   +      K  L+EI IL++L     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNH---  57

Query  231  EDKKHVIRFERHFDHKGHLCMVFENLSMNLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  290
                +++R    F+ K +L +V E   +    +          + R  +   +QI  GL 
Sbjct  58   ---PNIVRLYDAFEDKDNLYLVLE--YVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE  112

Query  291  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSRFYRAPEIILGI  350
                                            S S  T    TP+     Y APE++ G 
Sbjct  113  --------------------------------SGSSLTTFVGTPW-----YMAPEVLGGN  135

Query  351  PYDHAIDVWSIGCTLFELYTGKILFTGRNNNQMLRSIMECRGKYPPKLLRKGTLTHQHFD  410
            PY   +DVWS+GC L+EL TGK  F G N N++   I+                  Q + 
Sbjct  136  PYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII-----------------DQPYA  178

Query  411  DMLNFHSTEEDKVTGRLVTKVLDFKKPTRDLRTRLMGKNAKGMTDGEAKELALFVDLLER  470
                  +  E                                    EAK      DLL++
Sbjct  179  FPELPSNLSE------------------------------------EAK------DLLKK  196

Query  471  CLSLNPEKRCTPAEALRHPFI  491
             L  +P KR T  +AL+HP+ 
Sbjct  197  LLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.2 bits (217),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 27/225 (12%)

Query  180  LGKGMFSSVVRAT----DAKTGGLVAIKIIRQNDT--MRKAGLKEIGILEQLREADPEDK  233
            LG+G F  V + T       T   VA+K +++      R+  L+E  I+++L      D 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKL------DH  60

Query  234  KHVIRFERHFDHKGHLCMVFENLSM-NLREVLKKFGRDVGLNLRAIRAYAQQIFLGLSLL  292
             ++++          L +V E +   +L + L+K      L L+ + + A QI  G+  L
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRK--HKRKLTLKDLLSMALQIAKGMEYL  118

Query  293  RKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSR-------FYRAPE  345
               N +H DL   N LV+E   V K+ D G +    D++   Y   R        + APE
Sbjct  119  ESKNFVHRDLAARNCLVSENLVV-KISDFGLSRDIYDDD---YYRKRGGGKLPIKWMAPE  174

Query  346  IILGIPYDHAIDVWSIGCTLFELYT-GKILFTGRNNNQMLRSIME  389
             +    +    DVWS G  L+E++T G+  + G +N ++L  + +
Sbjct  175  SLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLED  219



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00022454

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  135     1e-37
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.2    8e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 135 bits (343),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 79/321 (25%), Positives = 115/321 (36%), Gaps = 107/321 (33%)

Query  174  YHVKQNLGKGMFSSVVRATDAKTGGLVAIKII---RQNDTMRKAGLKEIGILEQLREADP  230
            Y V + LG G F +V +A    TG +VAIK I   +      K  L+EI IL++L     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNH---  57

Query  231  EDKKHVIRFERHFDHKGHLCMVFENLSMNLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  290
                +++R    F+ K +L +V E   +    +          + R  +   +QI  GL 
Sbjct  58   ---PNIVRLYDAFEDKDNLYLVLE--YVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE  112

Query  291  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSRFYRAPEIILGI  350
                                            S S  T    TP+     Y APE++ G 
Sbjct  113  --------------------------------SGSSLTTFVGTPW-----YMAPEVLGGN  135

Query  351  PYDHAIDVWSIGCTLFELYTGKILFTGRNNNQMLRSIMECRGKYPPKLLRKGTLTHQHFD  410
            PY   +DVWS+GC L+EL TGK  F G N N++   I+                  Q + 
Sbjct  136  PYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII-----------------DQPYA  178

Query  411  DMLNFHSTEEDKVTGRLVTKVLDFKKPTRDLRTRLMGKNAKGMTDGEAKELALFVDLLER  470
                  +  E                                    EAK      DLL++
Sbjct  179  FPELPSNLSE------------------------------------EAK------DLLKK  196

Query  471  CLSLNPEKRCTPAEALRHPFI  491
             L  +P KR T  +AL+HP+ 
Sbjct  197  LLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.2 bits (217),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 27/225 (12%)

Query  180  LGKGMFSSVVRAT----DAKTGGLVAIKIIRQNDT--MRKAGLKEIGILEQLREADPEDK  233
            LG+G F  V + T       T   VA+K +++      R+  L+E  I+++L      D 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKL------DH  60

Query  234  KHVIRFERHFDHKGHLCMVFENLSM-NLREVLKKFGRDVGLNLRAIRAYAQQIFLGLSLL  292
             ++++          L +V E +   +L + L+K      L L+ + + A QI  G+  L
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRK--HKRKLTLKDLLSMALQIAKGMEYL  118

Query  293  RKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSR-------FYRAPE  345
               N +H DL   N LV+E   V K+ D G +    D++   Y   R        + APE
Sbjct  119  ESKNFVHRDLAARNCLVSENLVV-KISDFGLSRDIYDDD---YYRKRGGGKLPIKWMAPE  174

Query  346  IILGIPYDHAIDVWSIGCTLFELYT-GKILFTGRNNNQMLRSIME  389
             +    +    DVWS G  L+E++T G+  + G +N ++L  + +
Sbjct  175  SLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLED  219



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00022456

Length=808
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  135     8e-37
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.2    1e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 135 bits (343),  Expect = 8e-37, Method: Composition-based stats.
 Identities = 79/321 (25%), Positives = 115/321 (36%), Gaps = 107/321 (33%)

Query  486  YHVKQNLGKGMFSSVVRATDAKTGGLVAIKII---RQNDTMRKAGLKEIGILEQLREADP  542
            Y V + LG G F +V +A    TG +VAIK I   +      K  L+EI IL++L     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNH---  57

Query  543  EDKKHVIRFERHFDHKGHLCMVFENLSMNLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  602
                +++R    F+ K +L +V E   +    +          + R  +   +QI  GL 
Sbjct  58   ---PNIVRLYDAFEDKDNLYLVLE--YVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE  112

Query  603  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSRFYRAPEIILGI  662
                                            S S  T    TP+     Y APE++ G 
Sbjct  113  --------------------------------SGSSLTTFVGTPW-----YMAPEVLGGN  135

Query  663  PYDHAIDVWSIGCTLFELYTGKILFTGRNNNQMLRSIMECRGKYPPKLLRKGTLTHQHFD  722
            PY   +DVWS+GC L+EL TGK  F G N N++   I+                  Q + 
Sbjct  136  PYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII-----------------DQPYA  178

Query  723  DMLNFHSTEEDKVTGRLVTKVLDFKKPTRDLRTRLMGKNAKGMTDGEAKELALFVDLLER  782
                  +  E                                    EAK      DLL++
Sbjct  179  FPELPSNLSE------------------------------------EAK------DLLKK  196

Query  783  CLSLNPEKRCTPAEALRHPFI  803
             L  +P KR T  +AL+HP+ 
Sbjct  197  LLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.2 bits (217),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 102/227 (45%), Gaps = 31/227 (14%)

Query  492  LGKGMFSSVVRAT----DAKTGGLVAIKIIRQNDT--MRKAGLKEIGILEQLREADPEDK  545
            LG+G F  V + T       T   VA+K +++      R+  L+E  I+++L      D 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKL------DH  60

Query  546  KHVIRFERHFDHKGHLCMVFENLSM---NLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  602
             ++++          L +V E   M   +L + L+K      L L+ + + A QI  G+ 
Sbjct  61   PNIVKLLGVCTQGEPLYIVTE--YMPGGDLLDFLRK--HKRKLTLKDLLSMALQIAKGME  116

Query  603  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSR-------FYRA  655
             L   N +H DL   N LV+E   V K+ D G +    D++   Y   R        + A
Sbjct  117  YLESKNFVHRDLAARNCLVSENLVV-KISDFGLSRDIYDDD---YYRKRGGGKLPIKWMA  172

Query  656  PEIILGIPYDHAIDVWSIGCTLFELYT-GKILFTGRNNNQMLRSIME  701
            PE +    +    DVWS G  L+E++T G+  + G +N ++L  + +
Sbjct  173  PESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLED  219



Lambda      K        H        a         alpha
   0.314    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1038978528


Query= TCONS_00027138

Length=808
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  135     8e-37
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.2    1e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 135 bits (343),  Expect = 8e-37, Method: Composition-based stats.
 Identities = 79/321 (25%), Positives = 115/321 (36%), Gaps = 107/321 (33%)

Query  486  YHVKQNLGKGMFSSVVRATDAKTGGLVAIKII---RQNDTMRKAGLKEIGILEQLREADP  542
            Y V + LG G F +V +A    TG +VAIK I   +      K  L+EI IL++L     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNH---  57

Query  543  EDKKHVIRFERHFDHKGHLCMVFENLSMNLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  602
                +++R    F+ K +L +V E   +    +          + R  +   +QI  GL 
Sbjct  58   ---PNIVRLYDAFEDKDNLYLVLE--YVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE  112

Query  603  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSRFYRAPEIILGI  662
                                            S S  T    TP+     Y APE++ G 
Sbjct  113  --------------------------------SGSSLTTFVGTPW-----YMAPEVLGGN  135

Query  663  PYDHAIDVWSIGCTLFELYTGKILFTGRNNNQMLRSIMECRGKYPPKLLRKGTLTHQHFD  722
            PY   +DVWS+GC L+EL TGK  F G N N++   I+                  Q + 
Sbjct  136  PYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII-----------------DQPYA  178

Query  723  DMLNFHSTEEDKVTGRLVTKVLDFKKPTRDLRTRLMGKNAKGMTDGEAKELALFVDLLER  782
                  +  E                                    EAK      DLL++
Sbjct  179  FPELPSNLSE------------------------------------EAK------DLLKK  196

Query  783  CLSLNPEKRCTPAEALRHPFI  803
             L  +P KR T  +AL+HP+ 
Sbjct  197  LLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.2 bits (217),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 102/227 (45%), Gaps = 31/227 (14%)

Query  492  LGKGMFSSVVRAT----DAKTGGLVAIKIIRQNDT--MRKAGLKEIGILEQLREADPEDK  545
            LG+G F  V + T       T   VA+K +++      R+  L+E  I+++L      D 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKL------DH  60

Query  546  KHVIRFERHFDHKGHLCMVFENLSM---NLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  602
             ++++          L +V E   M   +L + L+K      L L+ + + A QI  G+ 
Sbjct  61   PNIVKLLGVCTQGEPLYIVTE--YMPGGDLLDFLRK--HKRKLTLKDLLSMALQIAKGME  116

Query  603  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSR-------FYRA  655
             L   N +H DL   N LV+E   V K+ D G +    D++   Y   R        + A
Sbjct  117  YLESKNFVHRDLAARNCLVSENLVV-KISDFGLSRDIYDDD---YYRKRGGGKLPIKWMA  172

Query  656  PEIILGIPYDHAIDVWSIGCTLFELYT-GKILFTGRNNNQMLRSIME  701
            PE +    +    DVWS G  L+E++T G+  + G +N ++L  + +
Sbjct  173  PESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLED  219



Lambda      K        H        a         alpha
   0.314    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1038978528


Query= TCONS_00022457

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  135     1e-37
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.2    8e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 135 bits (343),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 79/321 (25%), Positives = 115/321 (36%), Gaps = 107/321 (33%)

Query  174  YHVKQNLGKGMFSSVVRATDAKTGGLVAIKII---RQNDTMRKAGLKEIGILEQLREADP  230
            Y V + LG G F +V +A    TG +VAIK I   +      K  L+EI IL++L     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNH---  57

Query  231  EDKKHVIRFERHFDHKGHLCMVFENLSMNLREVLKKFGRDVGLNLRAIRAYAQQIFLGLS  290
                +++R    F+ K +L +V E   +    +          + R  +   +QI  GL 
Sbjct  58   ---PNIVRLYDAFEDKDNLYLVLE--YVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE  112

Query  291  LLRKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSRFYRAPEIILGI  350
                                            S S  T    TP+     Y APE++ G 
Sbjct  113  --------------------------------SGSSLTTFVGTPW-----YMAPEVLGGN  135

Query  351  PYDHAIDVWSIGCTLFELYTGKILFTGRNNNQMLRSIMECRGKYPPKLLRKGTLTHQHFD  410
            PY   +DVWS+GC L+EL TGK  F G N N++   I+                  Q + 
Sbjct  136  PYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII-----------------DQPYA  178

Query  411  DMLNFHSTEEDKVTGRLVTKVLDFKKPTRDLRTRLMGKNAKGMTDGEAKELALFVDLLER  470
                  +  E                                    EAK      DLL++
Sbjct  179  FPELPSNLSE------------------------------------EAK------DLLKK  196

Query  471  CLSLNPEKRCTPAEALRHPFI  491
             L  +P KR T  +AL+HP+ 
Sbjct  197  LLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.2 bits (217),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 27/225 (12%)

Query  180  LGKGMFSSVVRAT----DAKTGGLVAIKIIRQNDT--MRKAGLKEIGILEQLREADPEDK  233
            LG+G F  V + T       T   VA+K +++      R+  L+E  I+++L      D 
Sbjct  7    LGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKL------DH  60

Query  234  KHVIRFERHFDHKGHLCMVFENLSM-NLREVLKKFGRDVGLNLRAIRAYAQQIFLGLSLL  292
             ++++          L +V E +   +L + L+K      L L+ + + A QI  G+  L
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRK--HKRKLTLKDLLSMALQIAKGMEYL  118

Query  293  RKCNILHADLKPDNLLVNEQRNVLKVCDLGSASPATDNEITPYLVSR-------FYRAPE  345
               N +H DL   N LV+E   V K+ D G +    D++   Y   R        + APE
Sbjct  119  ESKNFVHRDLAARNCLVSENLVV-KISDFGLSRDIYDDD---YYRKRGGGKLPIKWMAPE  174

Query  346  IILGIPYDHAIDVWSIGCTLFELYT-GKILFTGRNNNQMLRSIME  389
             +    +    DVWS G  L+E++T G+  + G +N ++L  + +
Sbjct  175  SLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLED  219



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00022458

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00027139

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00027140

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00022459

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00027141

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  144     2e-41
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            104     4e-26


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 144 bits (366),  Expect = 2e-41, Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 112/259 (43%), Gaps = 47/259 (18%)

Query  41   LELTSILGVGAYGVVYTAVDIHTNVVYAVKALNKVGLDARQLKFQQREIKLHHLASQHPN  100
             E+   LG G++G VY A    T  + A+K + K  +  ++ K   REIK+      HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKK-LNHPN  59

Query  101  VVSLVRIMDSVDCTYVVIEFCPEGDLFSSITEKGNFVGNDPLVKRVFLQILDAVQYCHSL  160
            +V L    +  D  Y+V+E+   G LF  ++EKG F  ++   K +  QIL+ ++   SL
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAF--SEREAKFIMKQILEGLESGSSL  117

Query  161  GIYHRDLKPENILVTDQGLTVKLADFGLATTDYFTSDFGCGSTFYMSPECQQPNPRPLSC  220
                                               + F  G+ +YM+PE    NP     
Sbjct  118  -----------------------------------TTF-VGTPWYMAPEVLGGNP-----  136

Query  221  YASAPNDVWSLGVILVNLTCGRNPWKRASIEDSTFRAYLKDPYFLKSILP-LSDDLVCIL  279
            Y     DVWSLG IL  L  G+ P+      +  +   +  PY    +   LS++   +L
Sbjct  137  Y-GPKVDVWSLGCILYELLTGKPPF-PGINGNEIYELIIDQPYAFPELPSNLSEEAKDLL  194

Query  280  SRIFECDPSKRITIPELRQ  298
             ++ + DPSKR+T  +  Q
Sbjct  195  KKLLKKDPSKRLTATQALQ  213


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 104 bits (262),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 123/276 (45%), Gaps = 34/276 (12%)

Query  41   LELTSILGVGAYGVVY--TAVDIHTNVVY--AVKALNKVGLDARQLKFQQREIK-LHHLA  95
            L L   LG GA+G VY  T      N     AVK L +   +  +  F   E   +  L 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFL-EEASIMKKL-  58

Query  96   SQHPNVVSLVRIMDSVDCT-----YVVIEFCPEGDLFSSITEKGNFVGNDPLVKRVFLQI  150
              HPN+V L+ +     CT     Y+V E+ P GDL   + +    +    L+  + LQI
Sbjct  59   -DHPNIVKLLGV-----CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQI  111

Query  151  LDAVQYCHSLGIYHRDLKPENILVTDQGLTVKLADFGLA----TTDYFTSDFGCGS-TFY  205
               ++Y  S    HRDL   N LV++  L VK++DFGL+      DY+    G      +
Sbjct  112  AKGMEYLESKNFVHRDLAARNCLVSE-NLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  206  MSPECQQPNPRPLSCYASAPNDVWSLGVILVNL-TCGRNPWKRASIEDSTFRAYLKDPYF  264
            M+PE  +        + S  +DVWS GV+L  + T G  P+    + +     +L+D Y 
Sbjct  171  MAPESLK-----DGKFTSK-SDVWSFGVLLWEIFTLGEQPY--PGMSNEEVLEFLEDGYR  222

Query  265  LKSILPLSDDLVCILSRIFECDPSKRITIPELRQLI  300
            L       D+L  ++ + +  DP  R T  EL + +
Sbjct  223  LPQPENCPDELYDLMKQCWAYDPEDRPTFSELVEDL  258



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00022460

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  144     2e-41
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            104     4e-26


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 144 bits (366),  Expect = 2e-41, Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 112/259 (43%), Gaps = 47/259 (18%)

Query  41   LELTSILGVGAYGVVYTAVDIHTNVVYAVKALNKVGLDARQLKFQQREIKLHHLASQHPN  100
             E+   LG G++G VY A    T  + A+K + K  +  ++ K   REIK+      HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKK-LNHPN  59

Query  101  VVSLVRIMDSVDCTYVVIEFCPEGDLFSSITEKGNFVGNDPLVKRVFLQILDAVQYCHSL  160
            +V L    +  D  Y+V+E+   G LF  ++EKG F  ++   K +  QIL+ ++   SL
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAF--SEREAKFIMKQILEGLESGSSL  117

Query  161  GIYHRDLKPENILVTDQGLTVKLADFGLATTDYFTSDFGCGSTFYMSPECQQPNPRPLSC  220
                                               + F  G+ +YM+PE    NP     
Sbjct  118  -----------------------------------TTF-VGTPWYMAPEVLGGNP-----  136

Query  221  YASAPNDVWSLGVILVNLTCGRNPWKRASIEDSTFRAYLKDPYFLKSILP-LSDDLVCIL  279
            Y     DVWSLG IL  L  G+ P+      +  +   +  PY    +   LS++   +L
Sbjct  137  Y-GPKVDVWSLGCILYELLTGKPPF-PGINGNEIYELIIDQPYAFPELPSNLSEEAKDLL  194

Query  280  SRIFECDPSKRITIPELRQ  298
             ++ + DPSKR+T  +  Q
Sbjct  195  KKLLKKDPSKRLTATQALQ  213


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 104 bits (262),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 123/276 (45%), Gaps = 34/276 (12%)

Query  41   LELTSILGVGAYGVVY--TAVDIHTNVVY--AVKALNKVGLDARQLKFQQREIK-LHHLA  95
            L L   LG GA+G VY  T      N     AVK L +   +  +  F   E   +  L 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFL-EEASIMKKL-  58

Query  96   SQHPNVVSLVRIMDSVDCT-----YVVIEFCPEGDLFSSITEKGNFVGNDPLVKRVFLQI  150
              HPN+V L+ +     CT     Y+V E+ P GDL   + +    +    L+  + LQI
Sbjct  59   -DHPNIVKLLGV-----CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQI  111

Query  151  LDAVQYCHSLGIYHRDLKPENILVTDQGLTVKLADFGLA----TTDYFTSDFGCGS-TFY  205
               ++Y  S    HRDL   N LV++  L VK++DFGL+      DY+    G      +
Sbjct  112  AKGMEYLESKNFVHRDLAARNCLVSE-NLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  206  MSPECQQPNPRPLSCYASAPNDVWSLGVILVNL-TCGRNPWKRASIEDSTFRAYLKDPYF  264
            M+PE  +        + S  +DVWS GV+L  + T G  P+    + +     +L+D Y 
Sbjct  171  MAPESLK-----DGKFTSK-SDVWSFGVLLWEIFTLGEQPY--PGMSNEEVLEFLEDGYR  222

Query  265  LKSILPLSDDLVCILSRIFECDPSKRITIPELRQLI  300
            L       D+L  ++ + +  DP  R T  EL + +
Sbjct  223  LPQPENCPDELYDLMKQCWAYDPEDRPTFSELVEDL  258



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00027142

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  144     2e-41
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            104     4e-26


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 144 bits (366),  Expect = 2e-41, Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 112/259 (43%), Gaps = 47/259 (18%)

Query  41   LELTSILGVGAYGVVYTAVDIHTNVVYAVKALNKVGLDARQLKFQQREIKLHHLASQHPN  100
             E+   LG G++G VY A    T  + A+K + K  +  ++ K   REIK+      HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKK-LNHPN  59

Query  101  VVSLVRIMDSVDCTYVVIEFCPEGDLFSSITEKGNFVGNDPLVKRVFLQILDAVQYCHSL  160
            +V L    +  D  Y+V+E+   G LF  ++EKG F  ++   K +  QIL+ ++   SL
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAF--SEREAKFIMKQILEGLESGSSL  117

Query  161  GIYHRDLKPENILVTDQGLTVKLADFGLATTDYFTSDFGCGSTFYMSPECQQPNPRPLSC  220
                                               + F  G+ +YM+PE    NP     
Sbjct  118  -----------------------------------TTF-VGTPWYMAPEVLGGNP-----  136

Query  221  YASAPNDVWSLGVILVNLTCGRNPWKRASIEDSTFRAYLKDPYFLKSILP-LSDDLVCIL  279
            Y     DVWSLG IL  L  G+ P+      +  +   +  PY    +   LS++   +L
Sbjct  137  Y-GPKVDVWSLGCILYELLTGKPPF-PGINGNEIYELIIDQPYAFPELPSNLSEEAKDLL  194

Query  280  SRIFECDPSKRITIPELRQ  298
             ++ + DPSKR+T  +  Q
Sbjct  195  KKLLKKDPSKRLTATQALQ  213


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 104 bits (262),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 123/276 (45%), Gaps = 34/276 (12%)

Query  41   LELTSILGVGAYGVVY--TAVDIHTNVVY--AVKALNKVGLDARQLKFQQREIK-LHHLA  95
            L L   LG GA+G VY  T      N     AVK L +   +  +  F   E   +  L 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFL-EEASIMKKL-  58

Query  96   SQHPNVVSLVRIMDSVDCT-----YVVIEFCPEGDLFSSITEKGNFVGNDPLVKRVFLQI  150
              HPN+V L+ +     CT     Y+V E+ P GDL   + +    +    L+  + LQI
Sbjct  59   -DHPNIVKLLGV-----CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQI  111

Query  151  LDAVQYCHSLGIYHRDLKPENILVTDQGLTVKLADFGLA----TTDYFTSDFGCGS-TFY  205
               ++Y  S    HRDL   N LV++  L VK++DFGL+      DY+    G      +
Sbjct  112  AKGMEYLESKNFVHRDLAARNCLVSE-NLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  206  MSPECQQPNPRPLSCYASAPNDVWSLGVILVNL-TCGRNPWKRASIEDSTFRAYLKDPYF  264
            M+PE  +        + S  +DVWS GV+L  + T G  P+    + +     +L+D Y 
Sbjct  171  MAPESLK-----DGKFTSK-SDVWSFGVLLWEIFTLGEQPY--PGMSNEEVLEFLEDGYR  222

Query  265  LKSILPLSDDLVCILSRIFECDPSKRITIPELRQLI  300
            L       D+L  ++ + +  DP  R T  EL + +
Sbjct  223  LPQPENCPDELYDLMKQCWAYDPEDRPTFSELVEDL  258



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00022462

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  144     2e-41
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            104     4e-26


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 144 bits (366),  Expect = 2e-41, Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 112/259 (43%), Gaps = 47/259 (18%)

Query  41   LELTSILGVGAYGVVYTAVDIHTNVVYAVKALNKVGLDARQLKFQQREIKLHHLASQHPN  100
             E+   LG G++G VY A    T  + A+K + K  +  ++ K   REIK+      HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKK-LNHPN  59

Query  101  VVSLVRIMDSVDCTYVVIEFCPEGDLFSSITEKGNFVGNDPLVKRVFLQILDAVQYCHSL  160
            +V L    +  D  Y+V+E+   G LF  ++EKG F  ++   K +  QIL+ ++   SL
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAF--SEREAKFIMKQILEGLESGSSL  117

Query  161  GIYHRDLKPENILVTDQGLTVKLADFGLATTDYFTSDFGCGSTFYMSPECQQPNPRPLSC  220
                                               + F  G+ +YM+PE    NP     
Sbjct  118  -----------------------------------TTF-VGTPWYMAPEVLGGNP-----  136

Query  221  YASAPNDVWSLGVILVNLTCGRNPWKRASIEDSTFRAYLKDPYFLKSILP-LSDDLVCIL  279
            Y     DVWSLG IL  L  G+ P+      +  +   +  PY    +   LS++   +L
Sbjct  137  Y-GPKVDVWSLGCILYELLTGKPPF-PGINGNEIYELIIDQPYAFPELPSNLSEEAKDLL  194

Query  280  SRIFECDPSKRITIPELRQ  298
             ++ + DPSKR+T  +  Q
Sbjct  195  KKLLKKDPSKRLTATQALQ  213


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 104 bits (262),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 123/276 (45%), Gaps = 34/276 (12%)

Query  41   LELTSILGVGAYGVVY--TAVDIHTNVVY--AVKALNKVGLDARQLKFQQREIK-LHHLA  95
            L L   LG GA+G VY  T      N     AVK L +   +  +  F   E   +  L 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFL-EEASIMKKL-  58

Query  96   SQHPNVVSLVRIMDSVDCT-----YVVIEFCPEGDLFSSITEKGNFVGNDPLVKRVFLQI  150
              HPN+V L+ +     CT     Y+V E+ P GDL   + +    +    L+  + LQI
Sbjct  59   -DHPNIVKLLGV-----CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQI  111

Query  151  LDAVQYCHSLGIYHRDLKPENILVTDQGLTVKLADFGLA----TTDYFTSDFGCGS-TFY  205
               ++Y  S    HRDL   N LV++  L VK++DFGL+      DY+    G      +
Sbjct  112  AKGMEYLESKNFVHRDLAARNCLVSE-NLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  206  MSPECQQPNPRPLSCYASAPNDVWSLGVILVNL-TCGRNPWKRASIEDSTFRAYLKDPYF  264
            M+PE  +        + S  +DVWS GV+L  + T G  P+    + +     +L+D Y 
Sbjct  171  MAPESLK-----DGKFTSK-SDVWSFGVLLWEIFTLGEQPY--PGMSNEEVLEFLEDGYR  222

Query  265  LKSILPLSDDLVCILSRIFECDPSKRITIPELRQLI  300
            L       D+L  ++ + +  DP  R T  EL + +
Sbjct  223  LPQPENCPDELYDLMKQCWAYDPEDRPTFSELVEDL  258



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00022461

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  144     2e-41
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            104     4e-26


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 144 bits (366),  Expect = 2e-41, Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 112/259 (43%), Gaps = 47/259 (18%)

Query  41   LELTSILGVGAYGVVYTAVDIHTNVVYAVKALNKVGLDARQLKFQQREIKLHHLASQHPN  100
             E+   LG G++G VY A    T  + A+K + K  +  ++ K   REIK+      HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKK-LNHPN  59

Query  101  VVSLVRIMDSVDCTYVVIEFCPEGDLFSSITEKGNFVGNDPLVKRVFLQILDAVQYCHSL  160
            +V L    +  D  Y+V+E+   G LF  ++EKG F  ++   K +  QIL+ ++   SL
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAF--SEREAKFIMKQILEGLESGSSL  117

Query  161  GIYHRDLKPENILVTDQGLTVKLADFGLATTDYFTSDFGCGSTFYMSPECQQPNPRPLSC  220
                                               + F  G+ +YM+PE    NP     
Sbjct  118  -----------------------------------TTF-VGTPWYMAPEVLGGNP-----  136

Query  221  YASAPNDVWSLGVILVNLTCGRNPWKRASIEDSTFRAYLKDPYFLKSILP-LSDDLVCIL  279
            Y     DVWSLG IL  L  G+ P+      +  +   +  PY    +   LS++   +L
Sbjct  137  Y-GPKVDVWSLGCILYELLTGKPPF-PGINGNEIYELIIDQPYAFPELPSNLSEEAKDLL  194

Query  280  SRIFECDPSKRITIPELRQ  298
             ++ + DPSKR+T  +  Q
Sbjct  195  KKLLKKDPSKRLTATQALQ  213


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 104 bits (262),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 123/276 (45%), Gaps = 34/276 (12%)

Query  41   LELTSILGVGAYGVVY--TAVDIHTNVVY--AVKALNKVGLDARQLKFQQREIK-LHHLA  95
            L L   LG GA+G VY  T      N     AVK L +   +  +  F   E   +  L 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFL-EEASIMKKL-  58

Query  96   SQHPNVVSLVRIMDSVDCT-----YVVIEFCPEGDLFSSITEKGNFVGNDPLVKRVFLQI  150
              HPN+V L+ +     CT     Y+V E+ P GDL   + +    +    L+  + LQI
Sbjct  59   -DHPNIVKLLGV-----CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQI  111

Query  151  LDAVQYCHSLGIYHRDLKPENILVTDQGLTVKLADFGLA----TTDYFTSDFGCGS-TFY  205
               ++Y  S    HRDL   N LV++  L VK++DFGL+      DY+    G      +
Sbjct  112  AKGMEYLESKNFVHRDLAARNCLVSE-NLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  206  MSPECQQPNPRPLSCYASAPNDVWSLGVILVNL-TCGRNPWKRASIEDSTFRAYLKDPYF  264
            M+PE  +        + S  +DVWS GV+L  + T G  P+    + +     +L+D Y 
Sbjct  171  MAPESLK-----DGKFTSK-SDVWSFGVLLWEIFTLGEQPY--PGMSNEEVLEFLEDGYR  222

Query  265  LKSILPLSDDLVCILSRIFECDPSKRITIPELRQLI  300
            L       D+L  ++ + +  DP  R T  EL + +
Sbjct  223  LPQPENCPDELYDLMKQCWAYDPEDRPTFSELVEDL  258



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00022463

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  92.3    1e-23
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            85.6    9e-21


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 92.3 bits (230),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 39/120 (33%), Positives = 62/120 (52%), Gaps = 3/120 (3%)

Query  41   LELTSILGVGAYGVVYTAVDIHTNVVYAVKALNKVGLDARQLKFQQREIKLHHLASQHPN  100
             E+   LG G++G VY A    T  + A+K + K  +  ++ K   REIK+      HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKK-LNHPN  59

Query  101  VVSLVRIMDSVDCTYVVIEFCPEGDLFSSITEKGNFVGNDPLVKRVFLQILDAVQYCHSL  160
            +V L    +  D  Y+V+E+   G LF  ++EKG F  ++   K +  QIL+ ++   SL
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAF--SEREAKFIMKQILEGLESGSSL  117


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 85.6 bits (213),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 82/183 (45%), Gaps = 25/183 (14%)

Query  41   LELTSILGVGAYGVVY--TAVDIHTNVVY--AVKALNKVGLDARQLKFQQREIK-LHHLA  95
            L L   LG GA+G VY  T      N     AVK L +   +  +  F   E   +  L 
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFL-EEASIMKKL-  58

Query  96   SQHPNVVSLVRIMDSVDCT-----YVVIEFCPEGDLFSSITEKGNFVGNDPLVKRVFLQI  150
              HPN+V L+ +     CT     Y+V E+ P GDL   + +    +    L+  + LQI
Sbjct  59   -DHPNIVKLLGV-----CTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLS-MALQI  111

Query  151  LDAVQYCHSLGIYHRDLKPENILVTDQGLTVKLADFGLA----TTDYFTSDFGCGS-TFY  205
               ++Y  S    HRDL   N LV++  L VK++DFGL+      DY+    G      +
Sbjct  112  AKGMEYLESKNFVHRDLAARNCLVSE-NLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  206  MSP  208
            M+P
Sbjct  171  MAP  173



Lambda      K        H        a         alpha
   0.324    0.141    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00022464

Length=320


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00022465

Length=66
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431157 pfam10233, Cg6151-P, Uncharacterized conserved protein...  56.0    1e-12


>CDD:431157 pfam10233, Cg6151-P, Uncharacterized conserved protein CG6151-P. 
 This is a family of small, less than 200 residue long, 
proteins which are named as CG6151-P proteins that are conserved 
from fungi to humans. The function is unknown. The fungal 
members have a characteristic ICP sequence motif. Some members 
are annotated as putative clathrin-coated vesicle protein 
but this could not be defined.
Length=113

 Score = 56.0 bits (136),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 30/48 (63%), Gaps = 2/48 (4%)

Query  1    MRAAMYGVMSVVQWLSLLPGSGASSLIVAAVFLLIASIFYALAGLKSQ  48
            MRAA Y VM+VVQWLSL     A+SLI  AV L I  + Y LA L  Q
Sbjct  68   MRAAFYLVMAVVQWLSLC--VFATSLIAGAVLLFITGVCYGLAALGKQ  113



Lambda      K        H        a         alpha
   0.325    0.137    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00022466

Length=118
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431157 pfam10233, Cg6151-P, Uncharacterized conserved protein...  113     3e-34


>CDD:431157 pfam10233, Cg6151-P, Uncharacterized conserved protein CG6151-P. 
 This is a family of small, less than 200 residue long, 
proteins which are named as CG6151-P proteins that are conserved 
from fungi to humans. The function is unknown. The fungal 
members have a characteristic ICP sequence motif. Some members 
are annotated as putative clathrin-coated vesicle protein 
but this could not be defined.
Length=113

 Score = 113 bits (284),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 55/83 (66%), Positives = 62/83 (75%), Gaps = 2/83 (2%)

Query  18   ISGLILIFIEVPFLLRICPTSSKFDAFIRRFTTNWMRAAMYGVMSVVQWLSLLPGSGASS  77
            +SG I++FIEVPFLLRICPTS KFDAFIR+F TNWMRAA Y VM+VVQWLSL     A+S
Sbjct  33   VSGFIVLFIEVPFLLRICPTSDKFDAFIRKFETNWMRAAFYLVMAVVQWLSLC--VFATS  90

Query  78   LIVAAVFLLIASIFYALAGLKSQ  100
            LI  AV L I  + Y LA L  Q
Sbjct  91   LIAGAVLLFITGVCYGLAALGKQ  113



Lambda      K        H        a         alpha
   0.327    0.140    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00022467

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431157 pfam10233, Cg6151-P, Uncharacterized conserved protein...  140     8e-45


>CDD:431157 pfam10233, Cg6151-P, Uncharacterized conserved protein CG6151-P. 
 This is a family of small, less than 200 residue long, 
proteins which are named as CG6151-P proteins that are conserved 
from fungi to humans. The function is unknown. The fungal 
members have a characteristic ICP sequence motif. Some members 
are annotated as putative clathrin-coated vesicle protein 
but this could not be defined.
Length=113

 Score = 140 bits (356),  Expect = 8e-45, Method: Composition-based stats.
 Identities = 77/115 (67%), Positives = 90/115 (78%), Gaps = 2/115 (2%)

Query  19   TGVLCIILCIALGIANIFSFAVLRIIFSVLCLISGLILIFIEVPFLLRICPTSSKFDAFI  78
             G+L IILCIALGIANIF+F+V+ IIF +LC++SG I++FIEVPFLLRICPTS KFDAFI
Sbjct  1    LGILSIILCIALGIANIFTFSVVCIIFGILCIVSGFIVLFIEVPFLLRICPTSDKFDAFI  60

Query  79   RRFTTNWMRAAMYGVMSVVQWLSLLPGSGASSLIVAAVFLLIASIFYALAGLKSQ  133
            R+F TNWMRAA Y VM+VVQWLSL     A+SLI  AV L I  + Y LA L  Q
Sbjct  61   RKFETNWMRAAFYLVMAVVQWLSLC--VFATSLIAGAVLLFITGVCYGLAALGKQ  113



Lambda      K        H        a         alpha
   0.334    0.144    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00022468

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00022469

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425652 pfam00382, TFIIB, Transcription factor TFIIB repeat        86.2    1e-21


>CDD:425652 pfam00382, TFIIB, Transcription factor TFIIB repeat.  
Length=92

 Score = 86.2 bits (214),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 32/90 (36%), Positives = 48/90 (53%), Gaps = 0/90 (0%)

Query  120  NKALLAAYKEIGALCDGFNIQKNVADTAKYLFKIVDDAKAFKGKSQEVIIAGCIFIACRQ  179
            ++ L+ A + I    D   + + VAD A  + K+  D    KG+S   I A C++IACR 
Sbjct  2    DQTLIDARRFIPRFADALELPEKVADAAFEIAKLAVDDNLLKGRSPAGIAAACLYIACRL  61

Query  180  CKVPRTFTEIFAVTKVTRKEIGRIYKALEK  209
                RT  EI +V +VT   IG+ +K L+K
Sbjct  62   EGTKRTLKEISSVLQVTEYTIGKTFKELKK  91


 Score = 83.5 bits (207),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 44/90 (49%), Gaps = 0/90 (0%)

Query  236  TATTSTKPSDLCNRFCNLLDLPYQVTSVSSALSDRVTTMGDLAGRSPLSIVAACIYMASY  295
               T         RF + L+LP +V   +  ++        L GRSP  I AAC+Y+A  
Sbjct  1    RDQTLIDARRFIPRFADALELPEKVADAAFEIAKLAVDDNLLKGRSPAGIAAACLYIACR  60

Query  296  LMGHGKSAKEISQVAHVSDGTIRGAYKQLY  325
            L G  ++ KEIS V  V++ TI   +K+L 
Sbjct  61   LEGTKRTLKEISSVLQVTEYTIGKTFKELK  90



Lambda      K        H        a         alpha
   0.316    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00022470

Length=430
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425652 pfam00382, TFIIB, Transcription factor TFIIB repeat        86.2    2e-21


>CDD:425652 pfam00382, TFIIB, Transcription factor TFIIB repeat.  
Length=92

 Score = 86.2 bits (214),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 32/90 (36%), Positives = 48/90 (53%), Gaps = 0/90 (0%)

Query  200  NKALLAAYKEIGALCDGFNIQKNVADTAKYLFKIVDDAKAFKGKSQEVIIAGCIFIACRQ  259
            ++ L+ A + I    D   + + VAD A  + K+  D    KG+S   I A C++IACR 
Sbjct  2    DQTLIDARRFIPRFADALELPEKVADAAFEIAKLAVDDNLLKGRSPAGIAAACLYIACRL  61

Query  260  CKVPRTFTEIFAVTKVTRKEIGRIYKALEK  289
                RT  EI +V +VT   IG+ +K L+K
Sbjct  62   EGTKRTLKEISSVLQVTEYTIGKTFKELKK  91


 Score = 83.5 bits (207),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 44/90 (49%), Gaps = 0/90 (0%)

Query  316  TATTSTKPSDLCNRFCNLLDLPYQVTSVSSALSDRVTTMGDLAGRSPLSIVAACIYMASY  375
               T         RF + L+LP +V   +  ++        L GRSP  I AAC+Y+A  
Sbjct  1    RDQTLIDARRFIPRFADALELPEKVADAAFEIAKLAVDDNLLKGRSPAGIAAACLYIACR  60

Query  376  LMGHGKSAKEISQVAHVSDGTIRGAYKQLY  405
            L G  ++ KEIS V  V++ TI   +K+L 
Sbjct  61   LEGTKRTLKEISSVLQVTEYTIGKTFKELK  90



Lambda      K        H        a         alpha
   0.317    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521459360


Query= TCONS_00027143

Length=26


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82037150


Query= TCONS_00022471

Length=123
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431488 pfam10775, ATP_sub_h, ATP synthase complex subunit h. ...  93.8    3e-27


>CDD:431488 pfam10775, ATP_sub_h, ATP synthase complex subunit h.  Subunit 
h is a component of the yeast mitochondrial F1-F0 ATP synthase. 
It is essential for the correct assembly and functioning 
of this enzyme. Subunit h occupies a central place in the 
peripheral stalk between the F1 sector and the membrane.
Length=67

 Score = 93.8 bits (234),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 41/67 (61%), Positives = 57/67 (85%), Gaps = 1/67 (1%)

Query  28  FLTSAVRQADPVQELYLRQLQAYKPTPIKPGDAEAHVQKFSAPAAPQSPE-EANLANDLK  86
           F T+AVR+ D VQ+LYL++L+AYKP P+K  DAE  V+K+S PAAP++PE EA+LA++LK
Sbjct  1   FSTTAVRRKDLVQDLYLKELKAYKPPPVKAADAEGQVKKWSLPAAPKAPELEADLASELK  60

Query  87  AYESQDV  93
           AYE+Q+V
Sbjct  61  AYEAQEV  67



Lambda      K        H        a         alpha
   0.307    0.120    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00027144

Length=98
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431488 pfam10775, ATP_sub_h, ATP synthase complex subunit h. ...  75.7    1e-20


>CDD:431488 pfam10775, ATP_sub_h, ATP synthase complex subunit h.  Subunit 
h is a component of the yeast mitochondrial F1-F0 ATP synthase. 
It is essential for the correct assembly and functioning 
of this enzyme. Subunit h occupies a central place in the 
peripheral stalk between the F1 sector and the membrane.
Length=67

 Score = 75.7 bits (187),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 42/53 (79%), Gaps = 0/53 (0%)

Query  28  FLTSAVRQADPVQELYLRQLQAYKPTPIKPGDAEAHVQKFSAPAAPQSPEEAA  80
           F T+AVR+ D VQ+LYL++L+AYKP P+K  DAE  V+K+S PAAP++PE  A
Sbjct  1   FSTTAVRRKDLVQDLYLKELKAYKPPPVKAADAEGQVKKWSLPAAPKAPELEA  53



Lambda      K        H        a         alpha
   0.309    0.121    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00022472

Length=104
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431488 pfam10775, ATP_sub_h, ATP synthase complex subunit h. ...  94.2    1e-27


>CDD:431488 pfam10775, ATP_sub_h, ATP synthase complex subunit h.  Subunit 
h is a component of the yeast mitochondrial F1-F0 ATP synthase. 
It is essential for the correct assembly and functioning 
of this enzyme. Subunit h occupies a central place in the 
peripheral stalk between the F1 sector and the membrane.
Length=67

 Score = 94.2 bits (235),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 41/67 (61%), Positives = 57/67 (85%), Gaps = 1/67 (1%)

Query  28  FLTSAVRQADPVQELYLRQLQAYKPTPIKPGDAEAHVQKFSAPAAPQSPE-EANLANDLK  86
           F T+AVR+ D VQ+LYL++L+AYKP P+K  DAE  V+K+S PAAP++PE EA+LA++LK
Sbjct  1   FSTTAVRRKDLVQDLYLKELKAYKPPPVKAADAEGQVKKWSLPAAPKAPELEADLASELK  60

Query  87  AYESQDV  93
           AYE+Q+V
Sbjct  61  AYEAQEV  67



Lambda      K        H        a         alpha
   0.308    0.120    0.320    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00022473

Length=907
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461238 pfam04253, TFR_dimer, Transferrin receptor-like dimeri...  146     6e-42
CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28             83.9    6e-19
CDD:460499 pfam02225, PA, PA domain. The PA (Protease associated)...  59.8    1e-11


>CDD:461238 pfam04253, TFR_dimer, Transferrin receptor-like dimerization 
domain.  This domain is involved in dimerization of the transferrin 
receptor as shown in its crystal structure.
Length=116

 Score = 146 bits (372),  Expect = 6e-42, Method: Composition-based stats.
 Identities = 52/145 (36%), Positives = 74/145 (51%), Gaps = 30/145 (21%)

Query  760  VSFQPLFDAASKFKSDAEEFDQWAQLWHDTVWGAGGFENNVMAIQRLSHNSRLASFDTQL  819
            +S +PL  A  KFK  A+EFD WA+ W D        E +++A++    N +L  F+   
Sbjct  1    LSLEPLRKAIEKFKKAAKEFDAWAKKWEDI------KEPDLLAVRA--VNDKLMLFERAF  52

Query  820  LDLDHDGGVSTLPSHITSVPDTDSFRQIPNRTQFKHVIFGPQLWSGYDAAVFPAIRDSID  879
            LD +                       +P R  FKHV+F P LW+GY  A FP IRD+I+
Sbjct  53   LDPE----------------------GLPGRPWFKHVVFAPGLWTGYAGATFPGIRDAIE  90

Query  880  SGNWTLTQEWIDRVAKIIHRASNSL  904
            +G+W L Q+ I  VAK I  A+ +L
Sbjct  91   AGDWELAQKQISIVAKAIQSAAETL  115


>CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28.  
Length=192

 Score = 83.9 bits (208),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 52/187 (28%), Positives = 83/187 (44%), Gaps = 16/187 (9%)

Query  500  NVVGRIIGLEQPEKKVIVGNHRDSWCL--GSADPGSGTAVFLELVRVFGELRTFGWRPLR  557
            NV+ ++ G + P++ V++  H DS     G+ D  SG A  LEL RV       G RP R
Sbjct  1    NVIAKLPG-KAPDEVVLLSAHYDSVGTGPGADDNASGVAALLELARVLAA----GQRPKR  55

Query  558  TIEFVSWDAEEYNMIGSTEHVEKAIEALRENAFAYLNVD-VGVTGNNFDASGSPLFQRIV  616
            ++ F+ +DAEE  ++GS    +       +   A +N+D +G  G        P    ++
Sbjct  56   SVRFLFFDAEEAGLLGSHHFAKS--HPPLKKIRAVINLDMIGSGGPALLFQSGPKGSSLL  113

Query  617  MQILGRIADPITNETLKDIWERAQKKFSPLGSGSDYVAFQDIAGTSSVDFGFTGERFPYH  676
             + L   A P      +D     Q++  P    SD+  F   AG   +D  FT   + YH
Sbjct  114  EKYLKAAAKPYGVTLAEDP---FQERGGP--GRSDHAPFIK-AGIPGLDLAFTDFGYRYH  167

Query  677  SCYENYD  683
            +  +  D
Sbjct  168  TPADTID  174


>CDD:460499 pfam02225, PA, PA domain.  The PA (Protease associated) domain 
is found as an insert domain in diverse proteases. The PA 
domain is also found in a plant vacuolar sorting receptor and 
members of the RZF family. It has been suggested that this 
domain forms a lid-like structure that covers the active site 
in active proteases, and is involved in protein recognition 
in vacuolar sorting receptors.
Length=91

 Score = 59.8 bits (145),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 43/92 (47%), Gaps = 9/92 (10%)

Query  312  TGHLVYANYGSREDFQLLADQGIDMKGAIALVRYYGSETDRALKVKLAEMAGAAGCIIYS  371
            TG LV A      D         D+KG I LVR   +   RA KV+ A+ AGAAG IIY+
Sbjct  1    TGPLVLAPGCYAGDG---IPADFDVKGKIVLVRC--TFGFRAEKVRNAQAAGAAGVIIYN  55

Query  372  DPHEDGFRRGPAF----PDGRFMPDDGVQRGA  399
            +    G   G       PDG ++P  GV R  
Sbjct  56   NVEGLGGPPGAGGNELYPDGIYIPAVGVSRAD  87



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1165637368


Query= TCONS_00022474

Length=907
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461238 pfam04253, TFR_dimer, Transferrin receptor-like dimeri...  146     6e-42
CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28             83.9    6e-19
CDD:460499 pfam02225, PA, PA domain. The PA (Protease associated)...  59.8    1e-11


>CDD:461238 pfam04253, TFR_dimer, Transferrin receptor-like dimerization 
domain.  This domain is involved in dimerization of the transferrin 
receptor as shown in its crystal structure.
Length=116

 Score = 146 bits (372),  Expect = 6e-42, Method: Composition-based stats.
 Identities = 52/145 (36%), Positives = 74/145 (51%), Gaps = 30/145 (21%)

Query  760  VSFQPLFDAASKFKSDAEEFDQWAQLWHDTVWGAGGFENNVMAIQRLSHNSRLASFDTQL  819
            +S +PL  A  KFK  A+EFD WA+ W D        E +++A++    N +L  F+   
Sbjct  1    LSLEPLRKAIEKFKKAAKEFDAWAKKWEDI------KEPDLLAVRA--VNDKLMLFERAF  52

Query  820  LDLDHDGGVSTLPSHITSVPDTDSFRQIPNRTQFKHVIFGPQLWSGYDAAVFPAIRDSID  879
            LD +                       +P R  FKHV+F P LW+GY  A FP IRD+I+
Sbjct  53   LDPE----------------------GLPGRPWFKHVVFAPGLWTGYAGATFPGIRDAIE  90

Query  880  SGNWTLTQEWIDRVAKIIHRASNSL  904
            +G+W L Q+ I  VAK I  A+ +L
Sbjct  91   AGDWELAQKQISIVAKAIQSAAETL  115


>CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28.  
Length=192

 Score = 83.9 bits (208),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 52/187 (28%), Positives = 83/187 (44%), Gaps = 16/187 (9%)

Query  500  NVVGRIIGLEQPEKKVIVGNHRDSWCL--GSADPGSGTAVFLELVRVFGELRTFGWRPLR  557
            NV+ ++ G + P++ V++  H DS     G+ D  SG A  LEL RV       G RP R
Sbjct  1    NVIAKLPG-KAPDEVVLLSAHYDSVGTGPGADDNASGVAALLELARVLAA----GQRPKR  55

Query  558  TIEFVSWDAEEYNMIGSTEHVEKAIEALRENAFAYLNVD-VGVTGNNFDASGSPLFQRIV  616
            ++ F+ +DAEE  ++GS    +       +   A +N+D +G  G        P    ++
Sbjct  56   SVRFLFFDAEEAGLLGSHHFAKS--HPPLKKIRAVINLDMIGSGGPALLFQSGPKGSSLL  113

Query  617  MQILGRIADPITNETLKDIWERAQKKFSPLGSGSDYVAFQDIAGTSSVDFGFTGERFPYH  676
             + L   A P      +D     Q++  P    SD+  F   AG   +D  FT   + YH
Sbjct  114  EKYLKAAAKPYGVTLAEDP---FQERGGP--GRSDHAPFIK-AGIPGLDLAFTDFGYRYH  167

Query  677  SCYENYD  683
            +  +  D
Sbjct  168  TPADTID  174


>CDD:460499 pfam02225, PA, PA domain.  The PA (Protease associated) domain 
is found as an insert domain in diverse proteases. The PA 
domain is also found in a plant vacuolar sorting receptor and 
members of the RZF family. It has been suggested that this 
domain forms a lid-like structure that covers the active site 
in active proteases, and is involved in protein recognition 
in vacuolar sorting receptors.
Length=91

 Score = 59.8 bits (145),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 43/92 (47%), Gaps = 9/92 (10%)

Query  312  TGHLVYANYGSREDFQLLADQGIDMKGAIALVRYYGSETDRALKVKLAEMAGAAGCIIYS  371
            TG LV A      D         D+KG I LVR   +   RA KV+ A+ AGAAG IIY+
Sbjct  1    TGPLVLAPGCYAGDG---IPADFDVKGKIVLVRC--TFGFRAEKVRNAQAAGAAGVIIYN  55

Query  372  DPHEDGFRRGPAF----PDGRFMPDDGVQRGA  399
            +    G   G       PDG ++P  GV R  
Sbjct  56   NVEGLGGPPGAGGNELYPDGIYIPAVGVSRAD  87



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0795    0.140     1.90     42.6     43.6 

Effective search space used: 1165637368


Query= TCONS_00022475

Length=907
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461238 pfam04253, TFR_dimer, Transferrin receptor-like dimeri...  146     6e-42
CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28             83.9    6e-19
CDD:460499 pfam02225, PA, PA domain. The PA (Protease associated)...  59.8    1e-11


>CDD:461238 pfam04253, TFR_dimer, Transferrin receptor-like dimerization 
domain.  This domain is involved in dimerization of the transferrin 
receptor as shown in its crystal structure.
Length=116

 Score = 146 bits (372),  Expect = 6e-42, Method: Composition-based stats.
 Identities = 52/145 (36%), Positives = 74/145 (51%), Gaps = 30/145 (21%)

Query  760  VSFQPLFDAASKFKSDAEEFDQWAQLWHDTVWGAGGFENNVMAIQRLSHNSRLASFDTQL  819
            +S +PL  A  KFK  A+EFD WA+ W D        E +++A++    N +L  F+   
Sbjct  1    LSLEPLRKAIEKFKKAAKEFDAWAKKWEDI------KEPDLLAVRA--VNDKLMLFERAF  52

Query  820  LDLDHDGGVSTLPSHITSVPDTDSFRQIPNRTQFKHVIFGPQLWSGYDAAVFPAIRDSID  879
            LD +                       +P R  FKHV+F P LW+GY  A FP IRD+I+
Sbjct  53   LDPE----------------------GLPGRPWFKHVVFAPGLWTGYAGATFPGIRDAIE  90

Query  880  SGNWTLTQEWIDRVAKIIHRASNSL  904
            +G+W L Q+ I  VAK I  A+ +L
Sbjct  91   AGDWELAQKQISIVAKAIQSAAETL  115


>CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28.  
Length=192

 Score = 83.9 bits (208),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 52/187 (28%), Positives = 83/187 (44%), Gaps = 16/187 (9%)

Query  500  NVVGRIIGLEQPEKKVIVGNHRDSWCL--GSADPGSGTAVFLELVRVFGELRTFGWRPLR  557
            NV+ ++ G + P++ V++  H DS     G+ D  SG A  LEL RV       G RP R
Sbjct  1    NVIAKLPG-KAPDEVVLLSAHYDSVGTGPGADDNASGVAALLELARVLAA----GQRPKR  55

Query  558  TIEFVSWDAEEYNMIGSTEHVEKAIEALRENAFAYLNVD-VGVTGNNFDASGSPLFQRIV  616
            ++ F+ +DAEE  ++GS    +       +   A +N+D +G  G        P    ++
Sbjct  56   SVRFLFFDAEEAGLLGSHHFAKS--HPPLKKIRAVINLDMIGSGGPALLFQSGPKGSSLL  113

Query  617  MQILGRIADPITNETLKDIWERAQKKFSPLGSGSDYVAFQDIAGTSSVDFGFTGERFPYH  676
             + L   A P      +D     Q++  P    SD+  F   AG   +D  FT   + YH
Sbjct  114  EKYLKAAAKPYGVTLAEDP---FQERGGP--GRSDHAPFIK-AGIPGLDLAFTDFGYRYH  167

Query  677  SCYENYD  683
            +  +  D
Sbjct  168  TPADTID  174


>CDD:460499 pfam02225, PA, PA domain.  The PA (Protease associated) domain 
is found as an insert domain in diverse proteases. The PA 
domain is also found in a plant vacuolar sorting receptor and 
members of the RZF family. It has been suggested that this 
domain forms a lid-like structure that covers the active site 
in active proteases, and is involved in protein recognition 
in vacuolar sorting receptors.
Length=91

 Score = 59.8 bits (145),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 43/92 (47%), Gaps = 9/92 (10%)

Query  312  TGHLVYANYGSREDFQLLADQGIDMKGAIALVRYYGSETDRALKVKLAEMAGAAGCIIYS  371
            TG LV A      D         D+KG I LVR   +   RA KV+ A+ AGAAG IIY+
Sbjct  1    TGPLVLAPGCYAGDG---IPADFDVKGKIVLVRC--TFGFRAEKVRNAQAAGAAGVIIYN  55

Query  372  DPHEDGFRRGPAF----PDGRFMPDDGVQRGA  399
            +    G   G       PDG ++P  GV R  
Sbjct  56   NVEGLGGPPGAGGNELYPDGIYIPAVGVSRAD  87



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1165637368


Query= TCONS_00027145

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430087 pfam08578, DUF1765, Protein of unknown function (DUF17...  188     2e-59


>CDD:430087 pfam08578, DUF1765, Protein of unknown function (DUF1765).  This 
region represents a conserved region found in hypothetical 
proteins from fungi, mycetozoa and entamoebidae.
Length=125

 Score = 188 bits (481),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 69/125 (55%), Positives = 84/125 (67%), Gaps = 0/125 (0%)

Query  333  FCNIMKAAAQKTSLFDHNACFLLCDFVEEVLPILTRYSQAVDMELFDWKFWLSACRQMMR  392
            F +I+KA A+KTSL+DHNA FLL DF+EE L IL RY  +      DW FWL   + M+ 
Sbjct  1    FDSILKAIAKKTSLYDHNAVFLLLDFLEEFLIILFRYEPSSLPTFLDWPFWLDGIKMMLE  60

Query  393  SHNSLTEVRVFSFLFCVWGMWITSEERKADLCLDFLLDESLFYHYFSHWSPMVRAYFQRL  452
            S N+ +E+R  SFLF +W +     ERK  LCLD+LL E +F   F HWSPMVRAYF RL
Sbjct  61   SDNTQSEIRALSFLFNIWDLIPADPERKRKLCLDWLLSEEVFEKLFLHWSPMVRAYFHRL  120

Query  453  LCWRV  457
            LCWRV
Sbjct  121  LCWRV  125



Lambda      K        H        a         alpha
   0.326    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581273816


Query= TCONS_00022476

Length=1141
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430087 pfam08578, DUF1765, Protein of unknown function (DUF17...  207     6e-63


>CDD:430087 pfam08578, DUF1765, Protein of unknown function (DUF1765).  This 
region represents a conserved region found in hypothetical 
proteins from fungi, mycetozoa and entamoebidae.
Length=125

 Score = 207 bits (529),  Expect = 6e-63, Method: Composition-based stats.
 Identities = 69/125 (55%), Positives = 84/125 (67%), Gaps = 0/125 (0%)

Query  692  FCNIMKAAAQKTSLFDHNACFLLCDFVEEVLPILTRYSQAVDMELFDWKFWLSACRQMMR  751
            F +I+KA A+KTSL+DHNA FLL DF+EE L IL RY  +      DW FWL   + M+ 
Sbjct  1    FDSILKAIAKKTSLYDHNAVFLLLDFLEEFLIILFRYEPSSLPTFLDWPFWLDGIKMMLE  60

Query  752  SHNSLTEVRVFSFLFCVWGMWITSEERKADLCLDFLLDESLFYHYFSHWSPMVRAYFQRL  811
            S N+ +E+R  SFLF +W +     ERK  LCLD+LL E +F   F HWSPMVRAYF RL
Sbjct  61   SDNTQSEIRALSFLFNIWDLIPADPERKRKLCLDWLLSEEVFEKLFLHWSPMVRAYFHRL  120

Query  812  LCWRV  816
            LCWRV
Sbjct  121  LCWRV  125



Lambda      K        H        a         alpha
   0.318    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1457672472


Query= TCONS_00027146

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430087 pfam08578, DUF1765, Protein of unknown function (DUF17...  193     8e-60


>CDD:430087 pfam08578, DUF1765, Protein of unknown function (DUF1765).  This 
region represents a conserved region found in hypothetical 
proteins from fungi, mycetozoa and entamoebidae.
Length=125

 Score = 193 bits (494),  Expect = 8e-60, Method: Composition-based stats.
 Identities = 69/125 (55%), Positives = 84/125 (67%), Gaps = 0/125 (0%)

Query  485  FCNIMKAAAQKTSLFDHNACFLLCDFVEEVLPILTRYSQAVDMELFDWKFWLSACRQMMR  544
            F +I+KA A+KTSL+DHNA FLL DF+EE L IL RY  +      DW FWL   + M+ 
Sbjct  1    FDSILKAIAKKTSLYDHNAVFLLLDFLEEFLIILFRYEPSSLPTFLDWPFWLDGIKMMLE  60

Query  545  SHNSLTEVRVFSFLFCVWGMWITSEERKADLCLDFLLDESLFYHYFSHWSPMVRAYFQRL  604
            S N+ +E+R  SFLF +W +     ERK  LCLD+LL E +F   F HWSPMVRAYF RL
Sbjct  61   SDNTQSEIRALSFLFNIWDLIPADPERKRKLCLDWLLSEEVFEKLFLHWSPMVRAYFHRL  120

Query  605  LCWRV  609
            LCWRV
Sbjct  121  LCWRV  125



Lambda      K        H        a         alpha
   0.324    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790552412


Query= TCONS_00022477

Length=779
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461238 pfam04253, TFR_dimer, Transferrin receptor-like dimeri...  146     4e-42
CDD:460499 pfam02225, PA, PA domain. The PA (Protease associated)...  59.8    9e-12


>CDD:461238 pfam04253, TFR_dimer, Transferrin receptor-like dimerization 
domain.  This domain is involved in dimerization of the transferrin 
receptor as shown in its crystal structure.
Length=116

 Score = 146 bits (372),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 52/145 (36%), Positives = 74/145 (51%), Gaps = 30/145 (21%)

Query  632  VSFQPLFDAASKFKSDAEEFDQWAQLWHDTVWGAGGFENNVMAIQRLSHNSRLASFDTQL  691
            +S +PL  A  KFK  A+EFD WA+ W D        E +++A++    N +L  F+   
Sbjct  1    LSLEPLRKAIEKFKKAAKEFDAWAKKWEDI------KEPDLLAVRA--VNDKLMLFERAF  52

Query  692  LDLDHDGGVSTLPSHITSVPDTDSFRQIPNRTQFKHVIFGPQLWSGYDAAVFPAIRDSID  751
            LD +                       +P R  FKHV+F P LW+GY  A FP IRD+I+
Sbjct  53   LDPE----------------------GLPGRPWFKHVVFAPGLWTGYAGATFPGIRDAIE  90

Query  752  SGNWTLTQEWIDRVAKIIHRASNSL  776
            +G+W L Q+ I  VAK I  A+ +L
Sbjct  91   AGDWELAQKQISIVAKAIQSAAETL  115


>CDD:460499 pfam02225, PA, PA domain.  The PA (Protease associated) domain 
is found as an insert domain in diverse proteases. The PA 
domain is also found in a plant vacuolar sorting receptor and 
members of the RZF family. It has been suggested that this 
domain forms a lid-like structure that covers the active site 
in active proteases, and is involved in protein recognition 
in vacuolar sorting receptors.
Length=91

 Score = 59.8 bits (145),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 43/92 (47%), Gaps = 9/92 (10%)

Query  312  TGHLVYANYGSREDFQLLADQGIDMKGAIALVRYYGSETDRALKVKLAEMAGAAGCIIYS  371
            TG LV A      D         D+KG I LVR   +   RA KV+ A+ AGAAG IIY+
Sbjct  1    TGPLVLAPGCYAGDG---IPADFDVKGKIVLVRC--TFGFRAEKVRNAQAAGAAGVIIYN  55

Query  372  DPHEDGFRRGPAF----PDGRFMPDDGVQRGA  399
            +    G   G       PDG ++P  GV R  
Sbjct  56   NVEGLGGPPGAGGNELYPDGIYIPAVGVSRAD  87



Lambda      K        H        a         alpha
   0.318    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 996779120


Query= TCONS_00022483

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400722 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenz...  350     1e-121
CDD:307348 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenz...  162     2e-49 


>CDD:400722 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A synthase 
C terminal.  
Length=280

 Score = 350 bits (899),  Expect = 1e-121, Method: Composition-based stats.
 Identities = 149/284 (52%), Positives = 194/284 (68%), Gaps = 18/284 (6%)

Query  79   IVFEPGLRGSYVTHAYDFFKPDLTSEYPVVDGHFSLKCYTEAVDACYKAYAAREKVLKAK  138
            IVF+ GLRGS++ HAYDF+KPDLTSEYPVVDG  SL CY +A+D CYK Y  R+K+ +  
Sbjct  1    IVFDRGLRGSHMEHAYDFYKPDLTSEYPVVDGKLSLSCYLKALDRCYKNY--RKKINRIT  58

Query  139  VQNGTNGVENDETKTPLDRFDYVLFHAPTCKLVQKSYGRMLYNDYLANPSHPAFAEVPSE  198
                            L+ FDY++FH+PTCKLVQKS  R+LYND+L+NPS   F  V  +
Sbjct  59   KDGDKIFG--------LNDFDYMIFHSPTCKLVQKSLARLLYNDFLSNPSSDKFNGVDEK  110

Query  199  L---RDLDYEKSFTDKTVEKTFMGLTKKTFAERVRPGLDVATLCGNMYTATVYAGLASLL  255
            L     L  ++S+TDK +EK FM L+K  F ++V+P L V T  GNMYTA++YA LASLL
Sbjct  111  LTAFGGLTLDESYTDKDLEKAFMKLSKPFFKKKVQPSLLVPTNNGNMYTASLYAALASLL  170

Query  256  SNVTFDPSQPKRVALFSYGSGLASSMFSVKIVGDVS-----GMVEKLDLHKRLNARTVLP  310
            S+V+ D    KR+  FSYGSGLA+++FS+++  DVS      +   LDL KRL++R  + 
Sbjct  171  SHVSADDLAGKRIGAFSYGSGLAATLFSLRVKQDVSPGSILDIASVLDLGKRLDSRICVT  230

Query  311  PQTYDEMCILREHAHLKKNFKPTGNPDTLFPGTYYLTEIDDMFR  354
            P+ + E   LRE AHLKKNFKP G+ D+LFPGTYYLT +DD FR
Sbjct  231  PEEFTEAMELREQAHLKKNFKPQGSIDSLFPGTYYLTNVDDKFR  274


>CDD:307348 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A synthase 
N terminal.  
Length=173

 Score = 162 bits (410),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 59/78 (76%), Positives = 67/78 (86%), Gaps = 0/78 (0%)

Query  1    MQLFAPHGNTNIEGVDTVNACYGGTNAVFNSINWVESSAWDGRDAIVVCGDIALYAKGAA  60
            MQLF   GNT+IEG+DT NACYGGT A+FN+ NW+ESS+WDGR A+VVCGDIA+Y  G A
Sbjct  96   MQLFQESGNTDIEGIDTTNACYGGTAALFNAANWIESSSWDGRYALVVCGDIAIYPSGNA  155

Query  61   RPTGGAGAVAMLIGPDAP  78
            RPTGGAGAVAMLIGP AP
Sbjct  156  RPTGGAGAVAMLIGPKAP  173



Lambda      K        H        a         alpha
   0.319    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00022478

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400722 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenz...  358     2e-123
CDD:307348 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenz...  328     4e-113


>CDD:400722 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A synthase 
C terminal.  
Length=280

 Score = 358 bits (921),  Expect = 2e-123, Method: Composition-based stats.
 Identities = 152/290 (52%), Positives = 197/290 (68%), Gaps = 18/290 (6%)

Query  178  IVFEPGLRGSYVTHAYDFFKPDLTSEYPVVDGHFSLKCYTEAVDACYKAYAAREKVLKAK  237
            IVF+ GLRGS++ HAYDF+KPDLTSEYPVVDG  SL CY +A+D CYK Y  R+K+ +  
Sbjct  1    IVFDRGLRGSHMEHAYDFYKPDLTSEYPVVDGKLSLSCYLKALDRCYKNY--RKKINRIT  58

Query  238  VQNGTNGVENDETKTPLDRFDYVLFHAPTCKLVQKSYGRMLYNDYLANPSHPAFAEVPSE  297
                            L+ FDY++FH+PTCKLVQKS  R+LYND+L+NPS   F  V  +
Sbjct  59   KDGDKIFG--------LNDFDYMIFHSPTCKLVQKSLARLLYNDFLSNPSSDKFNGVDEK  110

Query  298  L---RDLDYEKSFTDKTVEKTFMGLTKKTFAERVRPGLDVATLCGNMYTATVYAGLASLL  354
            L     L  ++S+TDK +EK FM L+K  F ++V+P L V T  GNMYTA++YA LASLL
Sbjct  111  LTAFGGLTLDESYTDKDLEKAFMKLSKPFFKKKVQPSLLVPTNNGNMYTASLYAALASLL  170

Query  355  SNVTFDPSQPKRVALFSYGSGLASSMFSVKIVGDVS-----GMVEKLDLHKRLNARTVLP  409
            S+V+ D    KR+  FSYGSGLA+++FS+++  DVS      +   LDL KRL++R  + 
Sbjct  171  SHVSADDLAGKRIGAFSYGSGLAATLFSLRVKQDVSPGSILDIASVLDLGKRLDSRICVT  230

Query  410  PQTYDEMCILREHAHLKKNFKPTGNPDTLFPGTYYLTEIDDMFRRKYEIK  459
            P+ + E   LRE AHLKKNFKP G+ D+LFPGTYYLT +DD FRR Y  K
Sbjct  231  PEEFTEAMELREQAHLKKNFKPQGSIDSLFPGTYYLTNVDDKFRRSYARK  280


>CDD:307348 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A synthase 
N terminal.  
Length=173

 Score = 328 bits (842),  Expect = 4e-113, Method: Composition-based stats.
 Identities = 124/173 (72%), Positives = 144/173 (83%), Gaps = 0/173 (0%)

Query  5    PQNVGIKAIEVYFPSQCVDQAELEKFDGVSEGKYTIGLGQTKMSFCDDREDIYSIALTTC  64
            P++VGI A+E+YFP+Q VDQ ELEKFDGV  GKYTIGLGQT+M FC DREDI S+ LT  
Sbjct  1    PKDVGILALEIYFPAQYVDQTELEKFDGVEAGKYTIGLGQTRMGFCSDREDINSLCLTVV  60

Query  65   SSLLRKYNIDPKSIGRLEVGTETLLDKSKSVKSVLMQLFAPHGNTNIEGVDTVNACYGGT  124
              L+ +YN+    IGRLEVGTET++DKSKSVKSVLMQLF   GNT+IEG+DT NACYGGT
Sbjct  61   QKLMERYNLPWDKIGRLEVGTETIIDKSKSVKSVLMQLFQESGNTDIEGIDTTNACYGGT  120

Query  125  NAVFNSINWVESSAWDGRDAIVVCGDIALYAKGAARPTGGAGAVAMLIGPDAP  177
             A+FN+ NW+ESS+WDGR A+VVCGDIA+Y  G ARPTGGAGAVAMLIGP AP
Sbjct  121  AALFNAANWIESSSWDGRYALVVCGDIAIYPSGNARPTGGAGAVAMLIGPKAP  173



Lambda      K        H        a         alpha
   0.318    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00022479

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:307348 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenz...  327     8e-113
CDD:400722 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenz...  291     2e-97 


>CDD:307348 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A synthase 
N terminal.  
Length=173

 Score = 327 bits (839),  Expect = 8e-113, Method: Composition-based stats.
 Identities = 124/173 (72%), Positives = 144/173 (83%), Gaps = 0/173 (0%)

Query  5    PQNVGIKAIEVYFPSQCVDQAELEKFDGVSEGKYTIGLGQTKMSFCDDREDIYSIALTTC  64
            P++VGI A+E+YFP+Q VDQ ELEKFDGV  GKYTIGLGQT+M FC DREDI S+ LT  
Sbjct  1    PKDVGILALEIYFPAQYVDQTELEKFDGVEAGKYTIGLGQTRMGFCSDREDINSLCLTVV  60

Query  65   SSLLRKYNIDPKSIGRLEVGTETLLDKSKSVKSVLMQLFAPHGNTNIEGVDTVNACYGGT  124
              L+ +YN+    IGRLEVGTET++DKSKSVKSVLMQLF   GNT+IEG+DT NACYGGT
Sbjct  61   QKLMERYNLPWDKIGRLEVGTETIIDKSKSVKSVLMQLFQESGNTDIEGIDTTNACYGGT  120

Query  125  NAVFNSINWVESSAWDGRDAIVVCGDIALYAKGAARPTGGAGAVAMLIGPDAP  177
             A+FN+ NW+ESS+WDGR A+VVCGDIA+Y  G ARPTGGAGAVAMLIGP AP
Sbjct  121  AALFNAANWIESSSWDGRYALVVCGDIAIYPSGNARPTGGAGAVAMLIGPKAP  173


>CDD:400722 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A synthase 
C terminal.  
Length=280

 Score = 291 bits (747),  Expect = 2e-97, Method: Composition-based stats.
 Identities = 122/250 (49%), Positives = 164/250 (66%), Gaps = 18/250 (7%)

Query  178  IVFEPGLRGSYVTHAYDFFKPDLTSEYPVVDGHFSLKCYTEAVDACYKAYAAREKVLKAK  237
            IVF+ GLRGS++ HAYDF+KPDLTSEYPVVDG  SL CY +A+D CYK Y  R+K+ +  
Sbjct  1    IVFDRGLRGSHMEHAYDFYKPDLTSEYPVVDGKLSLSCYLKALDRCYKNY--RKKINRIT  58

Query  238  VQNGTNGVENDETKTPLDRFDYVLFHAPTCKLVQKSYGRMLYNDYLANPSHPAFAEVPSE  297
                            L+ FDY++FH+PTCKLVQKS  R+LYND+L+NPS   F  V  +
Sbjct  59   KDGDKIFG--------LNDFDYMIFHSPTCKLVQKSLARLLYNDFLSNPSSDKFNGVDEK  110

Query  298  L---RDLDYEKSFTDKTVEKTFMGLTKKTFAERVRPGLDVATLCGNMYTATVYAGLASLL  354
            L     L  ++S+TDK +EK FM L+K  F ++V+P L V T  GNMYTA++YA LASLL
Sbjct  111  LTAFGGLTLDESYTDKDLEKAFMKLSKPFFKKKVQPSLLVPTNNGNMYTASLYAALASLL  170

Query  355  SNVTFDPSQPKRVALFSYGSGLASSMFSVKIVGDVS-----GMVEKLDLHKRLNARTVLP  409
            S+V+ D    KR+  FSYGSGLA+++FS+++  DVS      +   LDL KRL++R  + 
Sbjct  171  SHVSADDLAGKRIGAFSYGSGLAATLFSLRVKQDVSPGSILDIASVLDLGKRLDSRICVT  230

Query  410  PQTYDEVRNQ  419
            P+ + E    
Sbjct  231  PEEFTEAMEL  240



Lambda      K        H        a         alpha
   0.318    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00022480

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400722 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenz...  358     2e-123
CDD:307348 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenz...  328     4e-113


>CDD:400722 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A synthase 
C terminal.  
Length=280

 Score = 358 bits (921),  Expect = 2e-123, Method: Composition-based stats.
 Identities = 152/290 (52%), Positives = 197/290 (68%), Gaps = 18/290 (6%)

Query  178  IVFEPGLRGSYVTHAYDFFKPDLTSEYPVVDGHFSLKCYTEAVDACYKAYAAREKVLKAK  237
            IVF+ GLRGS++ HAYDF+KPDLTSEYPVVDG  SL CY +A+D CYK Y  R+K+ +  
Sbjct  1    IVFDRGLRGSHMEHAYDFYKPDLTSEYPVVDGKLSLSCYLKALDRCYKNY--RKKINRIT  58

Query  238  VQNGTNGVENDETKTPLDRFDYVLFHAPTCKLVQKSYGRMLYNDYLANPSHPAFAEVPSE  297
                            L+ FDY++FH+PTCKLVQKS  R+LYND+L+NPS   F  V  +
Sbjct  59   KDGDKIFG--------LNDFDYMIFHSPTCKLVQKSLARLLYNDFLSNPSSDKFNGVDEK  110

Query  298  L---RDLDYEKSFTDKTVEKTFMGLTKKTFAERVRPGLDVATLCGNMYTATVYAGLASLL  354
            L     L  ++S+TDK +EK FM L+K  F ++V+P L V T  GNMYTA++YA LASLL
Sbjct  111  LTAFGGLTLDESYTDKDLEKAFMKLSKPFFKKKVQPSLLVPTNNGNMYTASLYAALASLL  170

Query  355  SNVTFDPSQPKRVALFSYGSGLASSMFSVKIVGDVS-----GMVEKLDLHKRLNARTVLP  409
            S+V+ D    KR+  FSYGSGLA+++FS+++  DVS      +   LDL KRL++R  + 
Sbjct  171  SHVSADDLAGKRIGAFSYGSGLAATLFSLRVKQDVSPGSILDIASVLDLGKRLDSRICVT  230

Query  410  PQTYDEMCILREHAHLKKNFKPTGNPDTLFPGTYYLTEIDDMFRRKYEIK  459
            P+ + E   LRE AHLKKNFKP G+ D+LFPGTYYLT +DD FRR Y  K
Sbjct  231  PEEFTEAMELREQAHLKKNFKPQGSIDSLFPGTYYLTNVDDKFRRSYARK  280


>CDD:307348 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A synthase 
N terminal.  
Length=173

 Score = 328 bits (842),  Expect = 4e-113, Method: Composition-based stats.
 Identities = 124/173 (72%), Positives = 144/173 (83%), Gaps = 0/173 (0%)

Query  5    PQNVGIKAIEVYFPSQCVDQAELEKFDGVSEGKYTIGLGQTKMSFCDDREDIYSIALTTC  64
            P++VGI A+E+YFP+Q VDQ ELEKFDGV  GKYTIGLGQT+M FC DREDI S+ LT  
Sbjct  1    PKDVGILALEIYFPAQYVDQTELEKFDGVEAGKYTIGLGQTRMGFCSDREDINSLCLTVV  60

Query  65   SSLLRKYNIDPKSIGRLEVGTETLLDKSKSVKSVLMQLFAPHGNTNIEGVDTVNACYGGT  124
              L+ +YN+    IGRLEVGTET++DKSKSVKSVLMQLF   GNT+IEG+DT NACYGGT
Sbjct  61   QKLMERYNLPWDKIGRLEVGTETIIDKSKSVKSVLMQLFQESGNTDIEGIDTTNACYGGT  120

Query  125  NAVFNSINWVESSAWDGRDAIVVCGDIALYAKGAARPTGGAGAVAMLIGPDAP  177
             A+FN+ NW+ESS+WDGR A+VVCGDIA+Y  G ARPTGGAGAVAMLIGP AP
Sbjct  121  AALFNAANWIESSSWDGRYALVVCGDIAIYPSGNARPTGGAGAVAMLIGPKAP  173



Lambda      K        H        a         alpha
   0.318    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00022481

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400722 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenz...  292     6e-99
CDD:307348 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenz...  161     2e-49


>CDD:400722 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A synthase 
C terminal.  
Length=280

 Score = 292 bits (748),  Expect = 6e-99, Method: Composition-based stats.
 Identities = 122/250 (49%), Positives = 164/250 (66%), Gaps = 18/250 (7%)

Query  79   IVFEPGLRGSYVTHAYDFFKPDLTSEYPVVDGHFSLKCYTEAVDACYKAYAAREKVLKAK  138
            IVF+ GLRGS++ HAYDF+KPDLTSEYPVVDG  SL CY +A+D CYK Y  R+K+ +  
Sbjct  1    IVFDRGLRGSHMEHAYDFYKPDLTSEYPVVDGKLSLSCYLKALDRCYKNY--RKKINRIT  58

Query  139  VQNGTNGVENDETKTPLDRFDYVLFHAPTCKLVQKSYGRMLYNDYLANPSHPAFAEVPSE  198
                            L+ FDY++FH+PTCKLVQKS  R+LYND+L+NPS   F  V  +
Sbjct  59   KDGDKIFG--------LNDFDYMIFHSPTCKLVQKSLARLLYNDFLSNPSSDKFNGVDEK  110

Query  199  L---RDLDYEKSFTDKTVEKTFMGLTKKTFAERVRPGLDVATLCGNMYTATVYAGLASLL  255
            L     L  ++S+TDK +EK FM L+K  F ++V+P L V T  GNMYTA++YA LASLL
Sbjct  111  LTAFGGLTLDESYTDKDLEKAFMKLSKPFFKKKVQPSLLVPTNNGNMYTASLYAALASLL  170

Query  256  SNVTFDPSQPKRVALFSYGSGLASSMFSVKIVGDVS-----GMVEKLDLHKRLNARTVLP  310
            S+V+ D    KR+  FSYGSGLA+++FS+++  DVS      +   LDL KRL++R  + 
Sbjct  171  SHVSADDLAGKRIGAFSYGSGLAATLFSLRVKQDVSPGSILDIASVLDLGKRLDSRICVT  230

Query  311  PQTYDEVRNQ  320
            P+ + E    
Sbjct  231  PEEFTEAMEL  240


>CDD:307348 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A synthase 
N terminal.  
Length=173

 Score = 161 bits (409),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 59/78 (76%), Positives = 67/78 (86%), Gaps = 0/78 (0%)

Query  1    MQLFAPHGNTNIEGVDTVNACYGGTNAVFNSINWVESSAWDGRDAIVVCGDIALYAKGAA  60
            MQLF   GNT+IEG+DT NACYGGT A+FN+ NW+ESS+WDGR A+VVCGDIA+Y  G A
Sbjct  96   MQLFQESGNTDIEGIDTTNACYGGTAALFNAANWIESSSWDGRYALVVCGDIAIYPSGNA  155

Query  61   RPTGGAGAVAMLIGPDAP  78
            RPTGGAGAVAMLIGP AP
Sbjct  156  RPTGGAGAVAMLIGPKAP  173



Lambda      K        H        a         alpha
   0.319    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00022482

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400722 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenz...  359     2e-123
CDD:307348 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenz...  324     9e-112


>CDD:400722 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A synthase 
C terminal.  
Length=280

 Score = 359 bits (922),  Expect = 2e-123, Method: Composition-based stats.
 Identities = 152/290 (52%), Positives = 197/290 (68%), Gaps = 18/290 (6%)

Query  178  IVFEPGLRGSYVTHAYDFFKPDLTSEYPVVDGHFSLKCYTEAVDACYKAYAAREKVLKAK  237
            IVF+ GLRGS++ HAYDF+KPDLTSEYPVVDG  SL CY +A+D CYK Y  R+K+ +  
Sbjct  1    IVFDRGLRGSHMEHAYDFYKPDLTSEYPVVDGKLSLSCYLKALDRCYKNY--RKKINRIT  58

Query  238  VQNGTNGVENDETKTPLDRFDYVLFHAPTCKLVQKSYGRMLYNDYLANPSHPAFAEVPSE  297
                            L+ FDY++FH+PTCKLVQKS  R+LYND+L+NPS   F  V  +
Sbjct  59   KDGDKIFG--------LNDFDYMIFHSPTCKLVQKSLARLLYNDFLSNPSSDKFNGVDEK  110

Query  298  L---RDLDYEKSFTDKTVEKTFMGLTKKTFAERVRPGLDVATLCGNMYTATVYAGLASLL  354
            L     L  ++S+TDK +EK FM L+K  F ++V+P L V T  GNMYTA++YA LASLL
Sbjct  111  LTAFGGLTLDESYTDKDLEKAFMKLSKPFFKKKVQPSLLVPTNNGNMYTASLYAALASLL  170

Query  355  SNVTFDPSQPKRVALFSYGSGLASSMFSVKIVGDVS-----GMVEKLDLHKRLNARTVLP  409
            S+V+ D    KR+  FSYGSGLA+++FS+++  DVS      +   LDL KRL++R  + 
Sbjct  171  SHVSADDLAGKRIGAFSYGSGLAATLFSLRVKQDVSPGSILDIASVLDLGKRLDSRICVT  230

Query  410  PQTYDEMCILREHAHLKKNFKPTGNPDTLFPGTYYLTEIDDMFRRKYEIK  459
            P+ + E   LRE AHLKKNFKP G+ D+LFPGTYYLT +DD FRR Y  K
Sbjct  231  PEEFTEAMELREQAHLKKNFKPQGSIDSLFPGTYYLTNVDDKFRRSYARK  280


>CDD:307348 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A synthase 
N terminal.  
Length=173

 Score = 324 bits (833),  Expect = 9e-112, Method: Composition-based stats.
 Identities = 123/173 (71%), Positives = 143/173 (83%), Gaps = 0/173 (0%)

Query  5    PQNVGIKAIEVYFPSQCVDQAELEKFDGVSEGKYTIGLGQTKMSFCDDREGIYSIALTTC  64
            P++VGI A+E+YFP+Q VDQ ELEKFDGV  GKYTIGLGQT+M FC DRE I S+ LT  
Sbjct  1    PKDVGILALEIYFPAQYVDQTELEKFDGVEAGKYTIGLGQTRMGFCSDREDINSLCLTVV  60

Query  65   SSLLRKYNIDPKSIGRLEVGTETLLDKSKSVKSVLMQLFAPHGNTNIEGVDTVNACYGGT  124
              L+ +YN+    IGRLEVGTET++DKSKSVKSVLMQLF   GNT+IEG+DT NACYGGT
Sbjct  61   QKLMERYNLPWDKIGRLEVGTETIIDKSKSVKSVLMQLFQESGNTDIEGIDTTNACYGGT  120

Query  125  NAVFNSINWVESSAWDGRDAIVVCGDIALYAKGAARPTGGAGAVAMLIGPDAP  177
             A+FN+ NW+ESS+WDGR A+VVCGDIA+Y  G ARPTGGAGAVAMLIGP AP
Sbjct  121  AALFNAANWIESSSWDGRYALVVCGDIAIYPSGNARPTGGAGAVAMLIGPKAP  173



Lambda      K        H        a         alpha
   0.318    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00022484

Length=643


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 811134500


Query= TCONS_00022485

Length=643


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 811134500


Query= TCONS_00027147

Length=688


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 877500050


Query= TCONS_00022486

Length=643


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 811134500


Query= TCONS_00027148

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      111     6e-31


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 111 bits (279),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 59/192 (31%), Positives = 87/192 (45%), Gaps = 34/192 (18%)

Query  6    DITVGDVLHLEPGDSVPADGILISGHGIKCDESSATGESDAMKKTNGHEVWQRIVNGTAT  65
            ++  GD++ L+PG+ VPADG ++ G     DES  TGES  ++K  G  V          
Sbjct  22   ELVPGDIVLLKPGERVPADGRIVEGSA-SVDESLLTGESLPVEKKKGDMV----------  70

Query  66   KKLDPFMISGSKVLEGVGTYLVTSVGPYSSYGRILLSLQES-NDPTPLQVKLGRLANWIG  124
                    SG+ V+ G    +VT+ G  +  GRI   ++E+ +  TPLQ  L RL  +  
Sbjct  71   -------YSGTVVVSGSAKAVVTATGEDTELGRIARLVEEAKSKKTPLQRLLDRLGKYFS  123

Query  125  WLGSSAAIILFFALFFRFVAQLPNNPASPAVKGKEFVDILIVAVTVIVVAIPEGLPLAVT  184
             +    A+ +F    F                G   +  L+ A+ V+V A P  LPLA  
Sbjct  124  PVVLLIALAVFLLWLFV---------------GGPPLRALLRALAVLVAACPCALPLATP  168

Query  185  LALAFATTRMVK  196
            LALA    R+ K
Sbjct  169  LALAVGARRLAK  180



Lambda      K        H        a         alpha
   0.318    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00022493

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      111     6e-31


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 111 bits (279),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 59/192 (31%), Positives = 87/192 (45%), Gaps = 34/192 (18%)

Query  6    DITVGDVLHLEPGDSVPADGILISGHGIKCDESSATGESDAMKKTNGHEVWQRIVNGTAT  65
            ++  GD++ L+PG+ VPADG ++ G     DES  TGES  ++K  G  V          
Sbjct  22   ELVPGDIVLLKPGERVPADGRIVEGSA-SVDESLLTGESLPVEKKKGDMV----------  70

Query  66   KKLDPFMISGSKVLEGVGTYLVTSVGPYSSYGRILLSLQES-NDPTPLQVKLGRLANWIG  124
                    SG+ V+ G    +VT+ G  +  GRI   ++E+ +  TPLQ  L RL  +  
Sbjct  71   -------YSGTVVVSGSAKAVVTATGEDTELGRIARLVEEAKSKKTPLQRLLDRLGKYFS  123

Query  125  WLGSSAAIILFFALFFRFVAQLPNNPASPAVKGKEFVDILIVAVTVIVVAIPEGLPLAVT  184
             +    A+ +F    F                G   +  L+ A+ V+V A P  LPLA  
Sbjct  124  PVVLLIALAVFLLWLFV---------------GGPPLRALLRALAVLVAACPCALPLATP  168

Query  185  LALAFATTRMVK  196
            LALA    R+ K
Sbjct  169  LALAVGARRLAK  180



Lambda      K        H        a         alpha
   0.318    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0602    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00027149

Length=222


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00027150

Length=256


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00022488

Length=573


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 718819868


Query= TCONS_00022489

Length=472


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00027151

Length=289


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 327287968


Query= TCONS_00022490

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00022491

Length=443


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00027152

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      111     6e-31


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 111 bits (279),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 59/192 (31%), Positives = 87/192 (45%), Gaps = 34/192 (18%)

Query  6    DITVGDVLHLEPGDSVPADGILISGHGIKCDESSATGESDAMKKTNGHEVWQRIVNGTAT  65
            ++  GD++ L+PG+ VPADG ++ G     DES  TGES  ++K  G  V          
Sbjct  22   ELVPGDIVLLKPGERVPADGRIVEGSA-SVDESLLTGESLPVEKKKGDMV----------  70

Query  66   KKLDPFMISGSKVLEGVGTYLVTSVGPYSSYGRILLSLQES-NDPTPLQVKLGRLANWIG  124
                    SG+ V+ G    +VT+ G  +  GRI   ++E+ +  TPLQ  L RL  +  
Sbjct  71   -------YSGTVVVSGSAKAVVTATGEDTELGRIARLVEEAKSKKTPLQRLLDRLGKYFS  123

Query  125  WLGSSAAIILFFALFFRFVAQLPNNPASPAVKGKEFVDILIVAVTVIVVAIPEGLPLAVT  184
             +    A+ +F    F                G   +  L+ A+ V+V A P  LPLA  
Sbjct  124  PVVLLIALAVFLLWLFV---------------GGPPLRALLRALAVLVAACPCALPLATP  168

Query  185  LALAFATTRMVK  196
            LALA    R+ K
Sbjct  169  LALAVGARRLAK  180



Lambda      K        H        a         alpha
   0.318    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00027153

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00027154

Length=709
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  169     1e-49
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  97.7    4e-25


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 169 bits (431),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 55/180 (31%), Positives = 85/180 (47%), Gaps = 8/180 (4%)

Query  439  TSVLSAVQLLWVNLIMDTFAALALATDPPTEQILHRKPVPKSASLFTVTMWKMIIGQAIY  498
               L+ +Q+LW+NL+ D   ALAL  +PP   ++ R P      LF+  M + I+ Q + 
Sbjct  1    PLPLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLL  60

Query  499  QLAVTFMLYFAGDKLLGSRLGTDKRQLKLDTIVFNTFVWMQIFNEFNNRRLDNKLNIFEG  558
               +T +++F G    G     + +     T+ FNT V  Q+FN  N R L   L    G
Sbjct  61   IAILTLLVFFLGLLGFGISESQNAQ-----TMAFNTLVLSQLFNALNARSLRRSLF-KIG  114

Query  559  MFRNYWFLGINCIMVGGQVMIIYV--GGAAFNVTRLDAVQWGICIVCAIACLPWAVILRL  616
            +F N   L    + +  Q++IIYV    A F  T L   QW I ++ A+  L    + +L
Sbjct  115  LFSNKLLLLAILLSLLLQLLIIYVPPLQAVFGTTPLSLEQWLIVLLLALVVLLVVELRKL  174


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 97.7 bits (244),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 39/91 (43%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query  85   IALNSTAFEEEKE-GSREFVGSKTEVAMLQMARDYLGMDVTTERGSAEIVQLIPFDSARK  143
               NS AF+E +E G  E VG  TE A+L  A   +G+DV   R     V  IPF+S RK
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEK-MGIDVEELRKDYPRVAEIPFNSDRK  59

Query  144  CMGVVNREP-TAGYRLLVKGAAEIMVGACSS  173
             M  V++ P    YRL VKGA EI++  C++
Sbjct  60   RMSTVHKLPDDGKYRLFVKGAPEIILDRCTT  90



Lambda      K        H        a         alpha
   0.320    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 908470640


Query= TCONS_00022492

Length=1220
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  173     3e-50
CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      118     4e-31
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  98.8    3e-25


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 173 bits (441),  Expect = 3e-50, Method: Composition-based stats.
 Identities = 55/180 (31%), Positives = 85/180 (47%), Gaps = 8/180 (4%)

Query  950   TSVLSAVQLLWVNLIMDTFAALALATDPPTEQILHRKPVPKSASLFTVTMWKMIIGQAIY  1009
                L+ +Q+LW+NL+ D   ALAL  +PP   ++ R P      LF+  M + I+ Q + 
Sbjct  1     PLPLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLL  60

Query  1010  QLAVTFMLYFAGDKLLGSRLGTDKRQLKLDTIVFNTFVWMQIFNEFNNRRLDNKLNIFEG  1069
                +T +++F G    G     + +     T+ FNT V  Q+FN  N R L   L    G
Sbjct  61    IAILTLLVFFLGLLGFGISESQNAQ-----TMAFNTLVLSQLFNALNARSLRRSLF-KIG  114

Query  1070  MFRNYWFLGINCIMVGGQVMIIYV--GGAAFNVTRLDAVQWGICIVCAIACLPWAVILRL  1127
             +F N   L    + +  Q++IIYV    A F  T L   QW I ++ A+  L    + +L
Sbjct  115   LFSNKLLLLAILLSLLLQLLIIYVPPLQAVFGTTPLSLEQWLIVLLLALVVLLVVELRKL  174


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 118 bits (299),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 61/211 (29%), Positives = 91/211 (43%), Gaps = 34/211 (16%)

Query  305  SDREVKAVRSGKVAMISVFDITVGDVLHLEPGDSVPADGILISGHGIKCDESSATGESDA  364
                   +R G    +   ++  GD++ L+PG+ VPADG ++ G     DES  TGES  
Sbjct  3    LPPTATVLRDGTEEEVPADELVPGDIVLLKPGERVPADGRIVEGSA-SVDESLLTGESLP  61

Query  365  MKKTNGHEVWQRIVNGTATKKLDPFMISGSKVLEGVGTYLVTSVGPYSSYGRILLSLQES  424
            ++K  G  V                  SG+ V+ G    +VT+ G  +  GRI   ++E+
Sbjct  62   VEKKKGDMV-----------------YSGTVVVSGSAKAVVTATGEDTELGRIARLVEEA  104

Query  425  -NDPTPLQVKLGRLANWIGWLGSSAAIILFFALFFRFVAQLPNNPASPAVKGKEFVDILI  483
             +  TPLQ  L RL  +   +    A+ +F    F                G   +  L+
Sbjct  105  KSKKTPLQRLLDRLGKYFSPVVLLIALAVFLLWLFV---------------GGPPLRALL  149

Query  484  VAVTVIVVAIPEGLPLAVTLALAFATTRMVK  514
             A+ V+V A P  LPLA  LALA    R+ K
Sbjct  150  RALAVLVAACPCALPLATPLALAVGARRLAK  180


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 98.8 bits (247),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 39/91 (43%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query  596  IALNSTAFEEEKE-GSREFVGSKTEVAMLQMARDYLGMDVTTERGSAEIVQLIPFDSARK  654
               NS AF+E +E G  E VG  TE A+L  A   +G+DV   R     V  IPF+S RK
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEK-MGIDVEELRKDYPRVAEIPFNSDRK  59

Query  655  CMGVVNREP-TAGYRLLVKGAAEIMVGACSS  684
             M  V++ P    YRL VKGA EI++  C++
Sbjct  60   RMSTVHKLPDDGKYRLFVKGAPEIILDRCTT  90



Lambda      K        H        a         alpha
   0.318    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1567975274


Query= TCONS_00022495

Length=503
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      111     4e-29


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 111 bits (280),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 69/157 (44%), Gaps = 19/157 (12%)

Query  305  SDREVKAVRSGKVAMISVFDITVGDVLHLEPGDSVPADGILISGHGIKCDESSATGESDA  364
                   +R G    +   ++  GD++ L+PG+ VPADG ++ G     DES  TGES  
Sbjct  3    LPPTATVLRDGTEEEVPADELVPGDIVLLKPGERVPADGRIVEGSA-SVDESLLTGESLP  61

Query  365  MKKTNGHEVWQRIVNGTATKKLDPFMISGSKVLEGVGTYLVTSVGPYSSYGRILLSLQES  424
            ++K  G  V                  SG+ V+ G    +VT+ G  +  GRI   ++E+
Sbjct  62   VEKKKGDMV-----------------YSGTVVVSGSAKAVVTATGEDTELGRIARLVEEA  104

Query  425  -NDPTPLQVKLGRLANWIGWLGSSAAIILFFALFFRF  460
             +  TPLQ  L RL  +   +    A+ +F    F  
Sbjct  105  KSKKTPLQRLLDRLGKYFSPVVLLIALAVFLLWLFVG  141



Lambda      K        H        a         alpha
   0.315    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 623795192


Query= TCONS_00022496

Length=709
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  169     1e-49
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  97.7    4e-25


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 169 bits (431),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 55/180 (31%), Positives = 85/180 (47%), Gaps = 8/180 (4%)

Query  439  TSVLSAVQLLWVNLIMDTFAALALATDPPTEQILHRKPVPKSASLFTVTMWKMIIGQAIY  498
               L+ +Q+LW+NL+ D   ALAL  +PP   ++ R P      LF+  M + I+ Q + 
Sbjct  1    PLPLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLL  60

Query  499  QLAVTFMLYFAGDKLLGSRLGTDKRQLKLDTIVFNTFVWMQIFNEFNNRRLDNKLNIFEG  558
               +T +++F G    G     + +     T+ FNT V  Q+FN  N R L   L    G
Sbjct  61   IAILTLLVFFLGLLGFGISESQNAQ-----TMAFNTLVLSQLFNALNARSLRRSLF-KIG  114

Query  559  MFRNYWFLGINCIMVGGQVMIIYV--GGAAFNVTRLDAVQWGICIVCAIACLPWAVILRL  616
            +F N   L    + +  Q++IIYV    A F  T L   QW I ++ A+  L    + +L
Sbjct  115  LFSNKLLLLAILLSLLLQLLIIYVPPLQAVFGTTPLSLEQWLIVLLLALVVLLVVELRKL  174


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 97.7 bits (244),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 39/91 (43%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query  85   IALNSTAFEEEKE-GSREFVGSKTEVAMLQMARDYLGMDVTTERGSAEIVQLIPFDSARK  143
               NS AF+E +E G  E VG  TE A+L  A   +G+DV   R     V  IPF+S RK
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEK-MGIDVEELRKDYPRVAEIPFNSDRK  59

Query  144  CMGVVNREP-TAGYRLLVKGAAEIMVGACSS  173
             M  V++ P    YRL VKGA EI++  C++
Sbjct  60   RMSTVHKLPDDGKYRLFVKGAPEIILDRCTT  90



Lambda      K        H        a         alpha
   0.320    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 908470640


Query= TCONS_00022497

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      88.4    1e-23


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 88.4 bits (220),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 39/122 (32%), Positives = 60/122 (49%), Gaps = 19/122 (16%)

Query  6    DITVGDVLHLEPGDSVPADGILISGHGIKCDESSATGESDAMKKTNGHEVWQRIVNGTAT  65
            ++  GD++ L+PG+ VPADG ++ G     DES  TGES  ++K  G  V          
Sbjct  22   ELVPGDIVLLKPGERVPADGRIVEGSA-SVDESLLTGESLPVEKKKGDMV----------  70

Query  66   KKLDPFMISGSKVLEGVGTYLVTSVGPYSSYGRILLSLQES-NDPTPLQVKLGRLANWIG  124
                    SG+ V+ G    +VT+ G  +  GRI   ++E+ +  TPLQ  L RL  +  
Sbjct  71   -------YSGTVVVSGSAKAVVTATGEDTELGRIARLVEEAKSKKTPLQRLLDRLGKYFS  123

Query  125  WL  126
             +
Sbjct  124  PV  125



Lambda      K        H        a         alpha
   0.315    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00022498

Length=1202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  173     3e-50
CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      118     5e-31
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  98.4    4e-25


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 173 bits (441),  Expect = 3e-50, Method: Composition-based stats.
 Identities = 55/180 (31%), Positives = 85/180 (47%), Gaps = 8/180 (4%)

Query  932   TSVLSAVQLLWVNLIMDTFAALALATDPPTEQILHRKPVPKSASLFTVTMWKMIIGQAIY  991
                L+ +Q+LW+NL+ D   ALAL  +PP   ++ R P      LF+  M + I+ Q + 
Sbjct  1     PLPLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLL  60

Query  992   QLAVTFMLYFAGDKLLGSRLGTDKRQLKLDTIVFNTFVWMQIFNEFNNRRLDNKLNIFEG  1051
                +T +++F G    G     + +     T+ FNT V  Q+FN  N R L   L    G
Sbjct  61    IAILTLLVFFLGLLGFGISESQNAQ-----TMAFNTLVLSQLFNALNARSLRRSLF-KIG  114

Query  1052  MFRNYWFLGINCIMVGGQVMIIYV--GGAAFNVTRLDAVQWGICIVCAIACLPWAVILRL  1109
             +F N   L    + +  Q++IIYV    A F  T L   QW I ++ A+  L    + +L
Sbjct  115   LFSNKLLLLAILLSLLLQLLIIYVPPLQAVFGTTPLSLEQWLIVLLLALVVLLVVELRKL  174


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 118 bits (299),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 61/211 (29%), Positives = 91/211 (43%), Gaps = 34/211 (16%)

Query  287  SDREVKAVRSGKVAMISVFDITVGDVLHLEPGDSVPADGILISGHGIKCDESSATGESDA  346
                   +R G    +   ++  GD++ L+PG+ VPADG ++ G     DES  TGES  
Sbjct  3    LPPTATVLRDGTEEEVPADELVPGDIVLLKPGERVPADGRIVEGSA-SVDESLLTGESLP  61

Query  347  MKKTNGHEVWQRIVNGTATKKLDPFMISGSKVLEGVGTYLVTSVGPYSSYGRILLSLQES  406
            ++K  G  V                  SG+ V+ G    +VT+ G  +  GRI   ++E+
Sbjct  62   VEKKKGDMV-----------------YSGTVVVSGSAKAVVTATGEDTELGRIARLVEEA  104

Query  407  -NDPTPLQVKLGRLANWIGWLGSSAAIILFFALFFRFVAQLPNNPASPAVKGKEFVDILI  465
             +  TPLQ  L RL  +   +    A+ +F    F                G   +  L+
Sbjct  105  KSKKTPLQRLLDRLGKYFSPVVLLIALAVFLLWLFV---------------GGPPLRALL  149

Query  466  VAVTVIVVAIPEGLPLAVTLALAFATTRMVK  496
             A+ V+V A P  LPLA  LALA    R+ K
Sbjct  150  RALAVLVAACPCALPLATPLALAVGARRLAK  180


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 98.4 bits (246),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 39/91 (43%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query  578  IALNSTAFEEEKE-GSREFVGSKTEVAMLQMARDYLGMDVTTERGSAEIVQLIPFDSARK  636
               NS AF+E +E G  E VG  TE A+L  A   +G+DV   R     V  IPF+S RK
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEK-MGIDVEELRKDYPRVAEIPFNSDRK  59

Query  637  CMGVVNREP-TAGYRLLVKGAAEIMVGACSS  666
             M  V++ P    YRL VKGA EI++  C++
Sbjct  60   RMSTVHKLPDDGKYRLFVKGAPEIILDRCTT  90



Lambda      K        H        a         alpha
   0.319    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1542842990


Query= TCONS_00027155

Length=709
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  169     1e-49
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  97.7    4e-25


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 169 bits (431),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 55/180 (31%), Positives = 85/180 (47%), Gaps = 8/180 (4%)

Query  439  TSVLSAVQLLWVNLIMDTFAALALATDPPTEQILHRKPVPKSASLFTVTMWKMIIGQAIY  498
               L+ +Q+LW+NL+ D   ALAL  +PP   ++ R P      LF+  M + I+ Q + 
Sbjct  1    PLPLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLL  60

Query  499  QLAVTFMLYFAGDKLLGSRLGTDKRQLKLDTIVFNTFVWMQIFNEFNNRRLDNKLNIFEG  558
               +T +++F G    G     + +     T+ FNT V  Q+FN  N R L   L    G
Sbjct  61   IAILTLLVFFLGLLGFGISESQNAQ-----TMAFNTLVLSQLFNALNARSLRRSLF-KIG  114

Query  559  MFRNYWFLGINCIMVGGQVMIIYV--GGAAFNVTRLDAVQWGICIVCAIACLPWAVILRL  616
            +F N   L    + +  Q++IIYV    A F  T L   QW I ++ A+  L    + +L
Sbjct  115  LFSNKLLLLAILLSLLLQLLIIYVPPLQAVFGTTPLSLEQWLIVLLLALVVLLVVELRKL  174


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 97.7 bits (244),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 39/91 (43%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query  85   IALNSTAFEEEKE-GSREFVGSKTEVAMLQMARDYLGMDVTTERGSAEIVQLIPFDSARK  143
               NS AF+E +E G  E VG  TE A+L  A   +G+DV   R     V  IPF+S RK
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEK-MGIDVEELRKDYPRVAEIPFNSDRK  59

Query  144  CMGVVNREP-TAGYRLLVKGAAEIMVGACSS  173
             M  V++ P    YRL VKGA EI++  C++
Sbjct  60   RMSTVHKLPDDGKYRLFVKGAPEIILDRCTT  90



Lambda      K        H        a         alpha
   0.320    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 908470640


Query= TCONS_00022499

Length=902
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  168     1e-48
CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      109     6e-28
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  98.4    3e-25


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 168 bits (428),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 55/180 (31%), Positives = 85/180 (47%), Gaps = 8/180 (4%)

Query  632  TSVLSAVQLLWVNLIMDTFAALALATDPPTEQILHRKPVPKSASLFTVTMWKMIIGQAIY  691
               L+ +Q+LW+NL+ D   ALAL  +PP   ++ R P      LF+  M + I+ Q + 
Sbjct  1    PLPLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLL  60

Query  692  QLAVTFMLYFAGDKLLGSRLGTDKRQLKLDTIVFNTFVWMQIFNEFNNRRLDNKLNIFEG  751
               +T +++F G    G     + +     T+ FNT V  Q+FN  N R L   L    G
Sbjct  61   IAILTLLVFFLGLLGFGISESQNAQ-----TMAFNTLVLSQLFNALNARSLRRSLF-KIG  114

Query  752  MFRNYWFLGINCIMVGGQVMIIYV--GGAAFNVTRLDAVQWGICIVCAIACLPWAVILRL  809
            +F N   L    + +  Q++IIYV    A F  T L   QW I ++ A+  L    + +L
Sbjct  115  LFSNKLLLLAILLSLLLQLLIIYVPPLQAVFGTTPLSLEQWLIVLLLALVVLLVVELRKL  174


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 109 bits (274),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 59/192 (31%), Positives = 87/192 (45%), Gaps = 34/192 (18%)

Query  6    DITVGDVLHLEPGDSVPADGILISGHGIKCDESSATGESDAMKKTNGHEVWQRIVNGTAT  65
            ++  GD++ L+PG+ VPADG ++ G     DES  TGES  ++K  G  V          
Sbjct  22   ELVPGDIVLLKPGERVPADGRIVEGSA-SVDESLLTGESLPVEKKKGDMV----------  70

Query  66   KKLDPFMISGSKVLEGVGTYLVTSVGPYSSYGRILLSLQES-NDPTPLQVKLGRLANWIG  124
                    SG+ V+ G    +VT+ G  +  GRI   ++E+ +  TPLQ  L RL  +  
Sbjct  71   -------YSGTVVVSGSAKAVVTATGEDTELGRIARLVEEAKSKKTPLQRLLDRLGKYFS  123

Query  125  WLGSSAAIILFFALFFRFVAQLPNNPASPAVKGKEFVDILIVAVTVIVVAIPEGLPLAVT  184
             +    A+ +F    F                G   +  L+ A+ V+V A P  LPLA  
Sbjct  124  PVVLLIALAVFLLWLFV---------------GGPPLRALLRALAVLVAACPCALPLATP  168

Query  185  LALAFATTRMVK  196
            LALA    R+ K
Sbjct  169  LALAVGARRLAK  180


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 98.4 bits (246),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 39/91 (43%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query  278  IALNSTAFEEEKE-GSREFVGSKTEVAMLQMARDYLGMDVTTERGSAEIVQLIPFDSARK  336
               NS AF+E +E G  E VG  TE A+L  A   +G+DV   R     V  IPF+S RK
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEK-MGIDVEELRKDYPRVAEIPFNSDRK  59

Query  337  CMGVVNREP-TAGYRLLVKGAAEIMVGACSS  366
             M  V++ P    YRL VKGA EI++  C++
Sbjct  60   RMSTVHKLPDDGKYRLFVKGAPEIILDRCTT  90



Lambda      K        H        a         alpha
   0.320    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1158459798


Query= TCONS_00027156

Length=709
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  169     1e-49
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  97.7    4e-25


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 169 bits (431),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 55/180 (31%), Positives = 85/180 (47%), Gaps = 8/180 (4%)

Query  439  TSVLSAVQLLWVNLIMDTFAALALATDPPTEQILHRKPVPKSASLFTVTMWKMIIGQAIY  498
               L+ +Q+LW+NL+ D   ALAL  +PP   ++ R P      LF+  M + I+ Q + 
Sbjct  1    PLPLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLL  60

Query  499  QLAVTFMLYFAGDKLLGSRLGTDKRQLKLDTIVFNTFVWMQIFNEFNNRRLDNKLNIFEG  558
               +T +++F G    G     + +     T+ FNT V  Q+FN  N R L   L    G
Sbjct  61   IAILTLLVFFLGLLGFGISESQNAQ-----TMAFNTLVLSQLFNALNARSLRRSLF-KIG  114

Query  559  MFRNYWFLGINCIMVGGQVMIIYV--GGAAFNVTRLDAVQWGICIVCAIACLPWAVILRL  616
            +F N   L    + +  Q++IIYV    A F  T L   QW I ++ A+  L    + +L
Sbjct  115  LFSNKLLLLAILLSLLLQLLIIYVPPLQAVFGTTPLSLEQWLIVLLLALVVLLVVELRKL  174


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 97.7 bits (244),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 39/91 (43%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query  85   IALNSTAFEEEKE-GSREFVGSKTEVAMLQMARDYLGMDVTTERGSAEIVQLIPFDSARK  143
               NS AF+E +E G  E VG  TE A+L  A   +G+DV   R     V  IPF+S RK
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEK-MGIDVEELRKDYPRVAEIPFNSDRK  59

Query  144  CMGVVNREP-TAGYRLLVKGAAEIMVGACSS  173
             M  V++ P    YRL VKGA EI++  C++
Sbjct  60   RMSTVHKLPDDGKYRLFVKGAPEIILDRCTT  90



Lambda      K        H        a         alpha
   0.320    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 908470640


Query= TCONS_00022500

Length=709
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  169     1e-49
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  97.7    4e-25


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 169 bits (431),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 55/180 (31%), Positives = 85/180 (47%), Gaps = 8/180 (4%)

Query  439  TSVLSAVQLLWVNLIMDTFAALALATDPPTEQILHRKPVPKSASLFTVTMWKMIIGQAIY  498
               L+ +Q+LW+NL+ D   ALAL  +PP   ++ R P      LF+  M + I+ Q + 
Sbjct  1    PLPLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLL  60

Query  499  QLAVTFMLYFAGDKLLGSRLGTDKRQLKLDTIVFNTFVWMQIFNEFNNRRLDNKLNIFEG  558
               +T +++F G    G     + +     T+ FNT V  Q+FN  N R L   L    G
Sbjct  61   IAILTLLVFFLGLLGFGISESQNAQ-----TMAFNTLVLSQLFNALNARSLRRSLF-KIG  114

Query  559  MFRNYWFLGINCIMVGGQVMIIYV--GGAAFNVTRLDAVQWGICIVCAIACLPWAVILRL  616
            +F N   L    + +  Q++IIYV    A F  T L   QW I ++ A+  L    + +L
Sbjct  115  LFSNKLLLLAILLSLLLQLLIIYVPPLQAVFGTTPLSLEQWLIVLLLALVVLLVVELRKL  174


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 97.7 bits (244),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 39/91 (43%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query  85   IALNSTAFEEEKE-GSREFVGSKTEVAMLQMARDYLGMDVTTERGSAEIVQLIPFDSARK  143
               NS AF+E +E G  E VG  TE A+L  A   +G+DV   R     V  IPF+S RK
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEK-MGIDVEELRKDYPRVAEIPFNSDRK  59

Query  144  CMGVVNREP-TAGYRLLVKGAAEIMVGACSS  173
             M  V++ P    YRL VKGA EI++  C++
Sbjct  60   RMSTVHKLPDDGKYRLFVKGAPEIILDRCTT  90



Lambda      K        H        a         alpha
   0.320    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0820    0.140     1.90     42.6     43.6 

Effective search space used: 908470640


Query= TCONS_00027157

Length=709
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  169     1e-49
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  97.7    4e-25


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 169 bits (431),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 55/180 (31%), Positives = 85/180 (47%), Gaps = 8/180 (4%)

Query  439  TSVLSAVQLLWVNLIMDTFAALALATDPPTEQILHRKPVPKSASLFTVTMWKMIIGQAIY  498
               L+ +Q+LW+NL+ D   ALAL  +PP   ++ R P      LF+  M + I+ Q + 
Sbjct  1    PLPLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLL  60

Query  499  QLAVTFMLYFAGDKLLGSRLGTDKRQLKLDTIVFNTFVWMQIFNEFNNRRLDNKLNIFEG  558
               +T +++F G    G     + +     T+ FNT V  Q+FN  N R L   L    G
Sbjct  61   IAILTLLVFFLGLLGFGISESQNAQ-----TMAFNTLVLSQLFNALNARSLRRSLF-KIG  114

Query  559  MFRNYWFLGINCIMVGGQVMIIYV--GGAAFNVTRLDAVQWGICIVCAIACLPWAVILRL  616
            +F N   L    + +  Q++IIYV    A F  T L   QW I ++ A+  L    + +L
Sbjct  115  LFSNKLLLLAILLSLLLQLLIIYVPPLQAVFGTTPLSLEQWLIVLLLALVVLLVVELRKL  174


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 97.7 bits (244),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 39/91 (43%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query  85   IALNSTAFEEEKE-GSREFVGSKTEVAMLQMARDYLGMDVTTERGSAEIVQLIPFDSARK  143
               NS AF+E +E G  E VG  TE A+L  A   +G+DV   R     V  IPF+S RK
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEK-MGIDVEELRKDYPRVAEIPFNSDRK  59

Query  144  CMGVVNREP-TAGYRLLVKGAAEIMVGACSS  173
             M  V++ P    YRL VKGA EI++  C++
Sbjct  60   RMSTVHKLPDDGKYRLFVKGAPEIILDRCTT  90



Lambda      K        H        a         alpha
   0.320    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 908470640


Query= TCONS_00022503

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00027158

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00022504

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00027159

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00022506

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00022507

Length=56
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460135 pfam01251, Ribosomal_S7e, Ribosomal protein S7e            72.9    7e-19


>CDD:460135 pfam01251, Ribosomal_S7e, Ribosomal protein S7e.  
Length=182

 Score = 72.9 bits (180),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 0/46 (0%)

Query  8   AHNSPSRQNPSELETAIAGALYDLESNTQDLKATLRPLQFVSAREV  53
               P  + P+ELE  +A AL DLE+N+ DLKA LR LQ  SA+EV
Sbjct  1   KIKKPKGEEPTELEEQVAQALLDLENNSSDLKADLRELQISSAKEV  46



Lambda      K        H        a         alpha
   0.312    0.124    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00022508

Length=56
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460135 pfam01251, Ribosomal_S7e, Ribosomal protein S7e            72.9    7e-19


>CDD:460135 pfam01251, Ribosomal_S7e, Ribosomal protein S7e.  
Length=182

 Score = 72.9 bits (180),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 0/46 (0%)

Query  8   AHNSPSRQNPSELETAIAGALYDLESNTQDLKATLRPLQFVSAREV  53
               P  + P+ELE  +A AL DLE+N+ DLKA LR LQ  SA+EV
Sbjct  1   KIKKPKGEEPTELEEQVAQALLDLENNSSDLKADLRELQISSAKEV  46



Lambda      K        H        a         alpha
   0.312    0.124    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00022509

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00027161

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00027162

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00027163

Length=806
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401348 pfam09364, XFP_N, XFP N-terminal domain. Bacterial enz...  513     5e-178
CDD:462772 pfam09363, XFP_C, XFP C-terminal domain. Bacterial enz...  347     8e-116
CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-ph...  317     2e-104


>CDD:401348 pfam09364, XFP_N, XFP N-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This 
family is distantly related to transketolases e.g. pfam02779.
Length=364

 Score = 513 bits (1324),  Expect = 5e-178, Method: Composition-based stats.
 Identities = 186/356 (52%), Positives = 245/356 (69%), Gaps = 9/356 (3%)

Query  44   KFRRAASYIAAAMIFLQDNVLLKRNLTHDDIKPRLLGHWGTCPGLILVYSHLNYLIKTRD  103
            K+ RAA+Y++A MI+L+DN LL   L  +D+K RL+GHWGT PGL  +Y+HLN LI   D
Sbjct  12   KYWRAANYLSAGMIYLRDNPLLGEPLKPEDLKHRLVGHWGTTPGLNFLYAHLNRLINKYD  71

Query  104  LDMLYVVGPGHGAPAILASLWLEGSLEKFYPDYSRNAEGLRNLISTFSTTAGLPSHINAE  163
             +MLY+VGPGHG PA+++  +L+GS  +FYP+ +++ EGL+ L   FS   G+PSH+  E
Sbjct  72   QNMLYMVGPGHGGPAMVSPSYLDGSYTEFYPEITKDEEGLKRLFKQFSFPGGIPSHMTPE  131

Query  164  TPGAIHEGGELGYALAVSFGAVMDNPDLIVACVVGDGEAESGPTATSWHAIKYIDPAESG  223
            TPG+IHEGGELGYAL+ ++GAV+DNPDLIV CVVGDGEAE+GP ATSWH+ K+I+P   G
Sbjct  132  TPGSIHEGGELGYALSHAYGAVLDNPDLIVPCVVGDGEAETGPLATSWHSNKFINPRTDG  191

Query  224  AVLPILHLNGFKISERTIFGCMDDRELISLFTGYGYQVRIVQDLNDIDT-DLHRSMT---  279
            AVLPILHLNG+KIS  TI   + D EL   F G GY    V    + D   +HR M    
Sbjct  192  AVLPILHLNGYKISNPTILARISDEELHKFFEGMGYHPYFV---ENEDPMSMHRLMAETF  248

Query  280  -WAVDEIHKIQQAARSGKPILKPRWPLLILRTPKGWTGPKKLHGKFIEGSFHSHQVPLPK  338
              AV+EIH IQ+AAR+     +PRWP++ILRTPKGWTGPK + GK  EGSF +HQVPL  
Sbjct  249  DTAVEEIHDIQKAARTNDMTERPRWPMVILRTPKGWTGPKYVDGKKTEGSFRAHQVPLAL  308

Query  339  AKKDKEELQALHEWLSSYGPNELFKENGDIIDEIKSIIPSEDSKKLGQRVEAYKAY  394
            A+ +   L+ L  W+ SY P ELF E+G + +E+ +  P  + K++G    A    
Sbjct  309  ARDNTAHLEQLKGWMESYKPEELFDEDGSLKEELTAFAPKGE-KRMGSNPNANGGV  363


>CDD:462772 pfam09363, XFP_C, XFP C-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Length=200

 Score = 347 bits (893),  Expect = 8e-116, Method: Composition-based stats.
 Identities = 92/204 (45%), Positives = 129/204 (63%), Gaps = 4/204 (2%)

Query  599  KQPTPVYLTPEEAESHCRAGASIWRFCSTDNGLDPDVVLVGIGVEVMFEVITAAAILRKR  658
            KQP P +L+ +EA  HC AGA IW + STD+G +PDVVL   G E   E + AAA+LR+ 
Sbjct  1    KQPHPQWLSMDEAIEHCTAGAGIWDWASTDDGEEPDVVLACAGDEPTLETLAAAALLREH  60

Query  659  CPELRVRVINVTDLMILENEGAHPHALTTEAFDNLFTYDKPIHFNYHGYATELQGLLSGR  718
             P+L+VRV+NV DLM L+    HPH L+ E FD LFT DKP+ FN+HGY   +  L   R
Sbjct  61   FPDLKVRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTTDKPVIFNFHGYPWLIHRLTYRR  120

Query  719  PRLDRVTINGYMEEGSTTTPFDMMLVNKTSRFHVAQAALRGAARRNESVRIRQQELYTEL  778
            P  D + + GY EEG+TTTPFDM ++N+  RFH+A  A+     R   +  +  EL  E+
Sbjct  121  PNHDNLHVRGYKEEGTTTTPFDMAVLNELDRFHLAIDAI----DRVPRLGAKAAELRQEM  176

Query  779  NHNIAETKKYIIENRKDPDDMYEM  802
            +  + E ++YI E+ +DP ++ + 
Sbjct  177  DDKLIEHRQYIREHGEDPPEIRDW  200


>CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-phosphate 
phosphoketolase.  Bacterial enzyme splits fructose-6-P and/or 
xylulose-5-P with the aid of inorganic phosphate into either 
acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P 
EC:4.1.2.9, EC:4.1.2.22. This family is distantly related 
to transketolases e.g. pfam02779.
Length=176

 Score = 317 bits (814),  Expect = 2e-104, Method: Composition-based stats.
 Identities = 96/177 (54%), Positives = 121/177 (68%), Gaps = 7/177 (4%)

Query  418  VTGKLIDEVFQLNPHRVRLFSPDELESNKLSAALDRTGRNFQW------DQFSNARGGRV  471
            V GK + +V +LNP   R+F PDE  SN+L A  + T R +Q       D+   A  GRV
Sbjct  1    VLGKFLRDVIKLNPDNFRIFGPDETASNRLDAVFEVTKRQWQAPILPEDDEHL-APDGRV  59

Query  472  IEVLSEHMCQGFLQGYTLTGRTGIFPSYESFLGIIHTMMVQYAKFIKMALETMWHRDVAS  531
            IEVLSEH CQG+L+GY LTGR G+F SYE+F  I+ +M+ Q+AK++KMA E  W   VAS
Sbjct  60   IEVLSEHTCQGWLEGYLLTGRHGLFASYEAFAHIVDSMLNQHAKWLKMARELPWRAPVAS  119

Query  532  INYIETSTWTRQEHNGFSHQNPSFIGAVLKLKPSAARVYLPPDANTFLTTLHHCLKS  588
            +NY+ TST  RQ+HNGFSHQ+P FI  VL  KP   RVYLPPDANT L+ + HCL+S
Sbjct  120  LNYLLTSTVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVYLPPDANTLLSVMDHCLRS  176



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1036068224


Query= TCONS_00022512

Length=580
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401348 pfam09364, XFP_N, XFP N-terminal domain. Bacterial enz...  511     3e-180
CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-ph...  300     1e-100


>CDD:401348 pfam09364, XFP_N, XFP N-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This 
family is distantly related to transketolases e.g. pfam02779.
Length=364

 Score = 511 bits (1317),  Expect = 3e-180, Method: Composition-based stats.
 Identities = 186/356 (52%), Positives = 245/356 (69%), Gaps = 9/356 (3%)

Query  44   KFRRAASYIAAAMIFLQDNVLLKRNLTHDDIKPRLLGHWGTCPGLILVYSHLNYLIKTRD  103
            K+ RAA+Y++A MI+L+DN LL   L  +D+K RL+GHWGT PGL  +Y+HLN LI   D
Sbjct  12   KYWRAANYLSAGMIYLRDNPLLGEPLKPEDLKHRLVGHWGTTPGLNFLYAHLNRLINKYD  71

Query  104  LDMLYVVGPGHGAPAILASLWLEGSLEKFYPDYSRNAEGLRNLISTFSTTAGLPSHINAE  163
             +MLY+VGPGHG PA+++  +L+GS  +FYP+ +++ EGL+ L   FS   G+PSH+  E
Sbjct  72   QNMLYMVGPGHGGPAMVSPSYLDGSYTEFYPEITKDEEGLKRLFKQFSFPGGIPSHMTPE  131

Query  164  TPGAIHEGGELGYALAVSFGAVMDNPDLIVACVVGDGEAESGPTATSWHAIKYIDPAESG  223
            TPG+IHEGGELGYAL+ ++GAV+DNPDLIV CVVGDGEAE+GP ATSWH+ K+I+P   G
Sbjct  132  TPGSIHEGGELGYALSHAYGAVLDNPDLIVPCVVGDGEAETGPLATSWHSNKFINPRTDG  191

Query  224  AVLPILHLNGFKISERTIFGCMDDRELISLFTGYGYQVRIVQDLNDIDT-DLHRSMT---  279
            AVLPILHLNG+KIS  TI   + D EL   F G GY    V    + D   +HR M    
Sbjct  192  AVLPILHLNGYKISNPTILARISDEELHKFFEGMGYHPYFV---ENEDPMSMHRLMAETF  248

Query  280  -WAVDEIHKIQQAARSGKPILKPRWPLLILRTPKGWTGPKKLHGKFIEGSFHSHQVPLPK  338
              AV+EIH IQ+AAR+     +PRWP++ILRTPKGWTGPK + GK  EGSF +HQVPL  
Sbjct  249  DTAVEEIHDIQKAARTNDMTERPRWPMVILRTPKGWTGPKYVDGKKTEGSFRAHQVPLAL  308

Query  339  AKKDKEELQALHEWLSSYGPNELFKENGDIIDEIKSIIPSEDSKKLGQRVEAYKAY  394
            A+ +   L+ L  W+ SY P ELF E+G + +E+ +  P  + K++G    A    
Sbjct  309  ARDNTAHLEQLKGWMESYKPEELFDEDGSLKEELTAFAPKGE-KRMGSNPNANGGV  363


>CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-phosphate 
phosphoketolase.  Bacterial enzyme splits fructose-6-P and/or 
xylulose-5-P with the aid of inorganic phosphate into either 
acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P 
EC:4.1.2.9, EC:4.1.2.22. This family is distantly related 
to transketolases e.g. pfam02779.
Length=176

 Score = 300 bits (772),  Expect = 1e-100, Method: Composition-based stats.
 Identities = 92/168 (55%), Positives = 114/168 (68%), Gaps = 7/168 (4%)

Query  418  VTGKLIDEVFQLNPHRVRLFSPDELESNKLSAALDRTGRNFQW------DQFSNARGGRV  471
            V GK + +V +LNP   R+F PDE  SN+L A  + T R +Q       D+   A  GRV
Sbjct  1    VLGKFLRDVIKLNPDNFRIFGPDETASNRLDAVFEVTKRQWQAPILPEDDEHL-APDGRV  59

Query  472  IEVLSEHMCQGFLQGYTLTGRTGIFPSYESFLGIIHTMMVQYAKFIKMALETMWHRDVAS  531
            IEVLSEH CQG+L+GY LTGR G+F SYE+F  I+ +M+ Q+AK++KMA E  W   VAS
Sbjct  60   IEVLSEHTCQGWLEGYLLTGRHGLFASYEAFAHIVDSMLNQHAKWLKMARELPWRAPVAS  119

Query  532  INYIETSTWTRQEHNGFSHQNPSFIGAVLKLKPSAARVYLPPDANTFL  579
            +NY+ TST  RQ+HNGFSHQ+P FI  VL  KP   RVYLPPDANT L
Sbjct  120  LNYLLTSTVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVYLPPDANTLL  167



Lambda      K        H        a         alpha
   0.319    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 729280864


Query= TCONS_00022514

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462772 pfam09363, XFP_C, XFP C-terminal domain. Bacterial enz...  334     6e-118
CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-ph...  134     8e-40 


>CDD:462772 pfam09363, XFP_C, XFP C-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Length=200

 Score = 334 bits (860),  Expect = 6e-118, Method: Composition-based stats.
 Identities = 90/194 (46%), Positives = 123/194 (63%), Gaps = 4/194 (2%)

Query  76   KQPTPVYLTPEEAESHCRAGASIWRFCSTDNGLDPDVVLVGIGVEVMFEVITAAAILRKR  135
            KQP P +L+ +EA  HC AGA IW + STD+G +PDVVL   G E   E + AAA+LR+ 
Sbjct  1    KQPHPQWLSMDEAIEHCTAGAGIWDWASTDDGEEPDVVLACAGDEPTLETLAAAALLREH  60

Query  136  CPELRVRVINVTDLMILENEGAHPHALTTEAFDNLFTYDKPIHFNYHGYATELQGLLSGR  195
             P+L+VRV+NV DLM L+    HPH L+ E FD LFT DKP+ FN+HGY   +  L   R
Sbjct  61   FPDLKVRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTTDKPVIFNFHGYPWLIHRLTYRR  120

Query  196  PRLDRVTINGYMEEGSTTTPFDMMLVNKTSRFHVAQAALRGAARRNESVRIRQQELYTEL  255
            P  D + + GY EEG+TTTPFDM ++N+  RFH+A  A+     R   +  +  EL  E+
Sbjct  121  PNHDNLHVRGYKEEGTTTTPFDMAVLNELDRFHLAIDAI----DRVPRLGAKAAELRQEM  176

Query  256  NHNIAETKKYIIEN  269
            +  + E ++YI E+
Sbjct  177  DDKLIEHRQYIREH  190


>CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-phosphate 
phosphoketolase.  Bacterial enzyme splits fructose-6-P and/or 
xylulose-5-P with the aid of inorganic phosphate into either 
acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P 
EC:4.1.2.9, EC:4.1.2.22. This family is distantly related 
to transketolases e.g. pfam02779.
Length=176

 Score = 134 bits (341),  Expect = 8e-40, Method: Composition-based stats.
 Identities = 40/64 (63%), Positives = 47/64 (73%), Gaps = 0/64 (0%)

Query  2    WHRDVASINYIETSTWTRQEHNGFSHQNPSFIGAVLKLKPSAARVYLPPDANTFLTTLHH  61
            W   VAS+NY+ TST  RQ+HNGFSHQ+P FI  VL  KP   RVYLPPDANT L+ + H
Sbjct  113  WRAPVASLNYLLTSTVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVYLPPDANTLLSVMDH  172

Query  62   CLKS  65
            CL+S
Sbjct  173  CLRS  176



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00022513

Length=714
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401348 pfam09364, XFP_N, XFP N-terminal domain. Bacterial enz...  428     7e-146
CDD:462772 pfam09363, XFP_C, XFP C-terminal domain. Bacterial enz...  336     1e-112
CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-ph...  317     2e-105


>CDD:401348 pfam09364, XFP_N, XFP N-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This 
family is distantly related to transketolases e.g. pfam02779.
Length=364

 Score = 428 bits (1102),  Expect = 7e-146, Method: Composition-based stats.
 Identities = 161/344 (47%), Positives = 212/344 (62%), Gaps = 40/344 (12%)

Query  1    MIFLQDNVLLKRNLTHDDIKPRLLG-------------------------------PGHG  29
            MI+L+DN LL   L  +D+K RL+G                               PGHG
Sbjct  24   MIYLRDNPLLGEPLKPEDLKHRLVGHWGTTPGLNFLYAHLNRLINKYDQNMLYMVGPGHG  83

Query  30   APAILASLWLEGSLEKFYPDYSRNAEGLRNLISTFSTTAGLPSHINAETPGAIHEGGELG  89
             PA+++  +L+GS  +FYP+ +++ EGL+ L   FS   G+PSH+  ETPG+IHEGGELG
Sbjct  84   GPAMVSPSYLDGSYTEFYPEITKDEEGLKRLFKQFSFPGGIPSHMTPETPGSIHEGGELG  143

Query  90   YALAVSFGAVMDNPDLIVACVVGDGEAESGPTATSWHAIKYIDPAESGAVLPILHLNGFK  149
            YAL+ ++GAV+DNPDLIV CVVGDGEAE+GP ATSWH+ K+I+P   GAVLPILHLNG+K
Sbjct  144  YALSHAYGAVLDNPDLIVPCVVGDGEAETGPLATSWHSNKFINPRTDGAVLPILHLNGYK  203

Query  150  ISERTIFGCMDDRELISLFTGYGYQVRIVQDLNDIDT-DLHRSMT----WAVDEIHKIQQ  204
            IS  TI   + D EL   F G GY    V    + D   +HR M      AV+EIH IQ+
Sbjct  204  ISNPTILARISDEELHKFFEGMGYHPYFV---ENEDPMSMHRLMAETFDTAVEEIHDIQK  260

Query  205  AARSGKPILKPRWPLLILRTPKGWTGPKKLHGKFIEGSFHSHQVPLPKAKKDKEELQALH  264
            AAR+     +PRWP++ILRTPKGWTGPK + GK  EGSF +HQVPL  A+ +   L+ L 
Sbjct  261  AARTNDMTERPRWPMVILRTPKGWTGPKYVDGKKTEGSFRAHQVPLALARDNTAHLEQLK  320

Query  265  EWLSSYGPNELFKENGDIIDEIKSIIPSEDSKKLGQRVEAYKAY  308
             W+ SY P ELF E+G + +E+ +  P  + K++G    A    
Sbjct  321  GWMESYKPEELFDEDGSLKEELTAFAPKGE-KRMGSNPNANGGV  363


>CDD:462772 pfam09363, XFP_C, XFP C-terminal domain.  Bacterial enzyme splits 
fructose-6-P and/or xylulose-5-P with the aid of inorganic 
phosphate into either acetyl-P and erythrose-4-P and/or 
acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Length=200

 Score = 336 bits (865),  Expect = 1e-112, Method: Composition-based stats.
 Identities = 90/194 (46%), Positives = 123/194 (63%), Gaps = 4/194 (2%)

Query  513  KQPTPVYLTPEEAESHCRAGASIWRFCSTDNGLDPDVVLVGIGVEVMFEVITAAAILRKR  572
            KQP P +L+ +EA  HC AGA IW + STD+G +PDVVL   G E   E + AAA+LR+ 
Sbjct  1    KQPHPQWLSMDEAIEHCTAGAGIWDWASTDDGEEPDVVLACAGDEPTLETLAAAALLREH  60

Query  573  CPELRVRVINVTDLMILENEGAHPHALTTEAFDNLFTYDKPIHFNYHGYATELQGLLSGR  632
             P+L+VRV+NV DLM L+    HPH L+ E FD LFT DKP+ FN+HGY   +  L   R
Sbjct  61   FPDLKVRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTTDKPVIFNFHGYPWLIHRLTYRR  120

Query  633  PRLDRVTINGYMEEGSTTTPFDMMLVNKTSRFHVAQAALRGAARRNESVRIRQQELYTEL  692
            P  D + + GY EEG+TTTPFDM ++N+  RFH+A  A+     R   +  +  EL  E+
Sbjct  121  PNHDNLHVRGYKEEGTTTTPFDMAVLNELDRFHLAIDAI----DRVPRLGAKAAELRQEM  176

Query  693  NHNIAETKKYIIEN  706
            +  + E ++YI E+
Sbjct  177  DDKLIEHRQYIREH  190


>CDD:427575 pfam03894, XFP, D-xylulose 5-phosphate/D-fructose 6-phosphate 
phosphoketolase.  Bacterial enzyme splits fructose-6-P and/or 
xylulose-5-P with the aid of inorganic phosphate into either 
acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P 
EC:4.1.2.9, EC:4.1.2.22. This family is distantly related 
to transketolases e.g. pfam02779.
Length=176

 Score = 317 bits (814),  Expect = 2e-105, Method: Composition-based stats.
 Identities = 96/177 (54%), Positives = 121/177 (68%), Gaps = 7/177 (4%)

Query  332  VTGKLIDEVFQLNPHRVRLFSPDELESNKLSAALDRTGRNFQW------DQFSNARGGRV  385
            V GK + +V +LNP   R+F PDE  SN+L A  + T R +Q       D+   A  GRV
Sbjct  1    VLGKFLRDVIKLNPDNFRIFGPDETASNRLDAVFEVTKRQWQAPILPEDDEHL-APDGRV  59

Query  386  IEVLSEHMCQGFLQGYTLTGRTGIFPSYESFLGIIHTMMVQYAKFIKMALETMWHRDVAS  445
            IEVLSEH CQG+L+GY LTGR G+F SYE+F  I+ +M+ Q+AK++KMA E  W   VAS
Sbjct  60   IEVLSEHTCQGWLEGYLLTGRHGLFASYEAFAHIVDSMLNQHAKWLKMARELPWRAPVAS  119

Query  446  INYIETSTWTRQEHNGFSHQNPSFIGAVLKLKPSAARVYLPPDANTFLTTLHHCLKS  502
            +NY+ TST  RQ+HNGFSHQ+P FI  VL  KP   RVYLPPDANT L+ + HCL+S
Sbjct  120  LNYLLTSTVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVYLPPDANTLLSVMDHCLRS  176



Lambda      K        H        a         alpha
   0.319    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 902194240


Query= TCONS_00022515

Length=1258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463814 pfam13236, CLU, Clustered mitochondria. The CLU domain...  327     3e-104
CDD:463717 pfam12807, eIF3_p135, Translation initiation factor eI...  269     6e-84 
CDD:464466 pfam15044, CLU_N, Mitochondrial function, CLU-N-term. ...  111     1e-29 
CDD:315987 pfam13424, TPR_12, Tetratricopeptide repeat                58.9    3e-11 


>CDD:463814 pfam13236, CLU, Clustered mitochondria.  The CLU domain (CLUstered 
mitochondria) is a eukaryotic domain found in proteins 
from fungi, protozoa, plants to humans. It is required for 
correct functioning of the mitochondria and mitochondrial transport 
although the exact function of the domain is unknown. 
In Dictyostelium the full-length protein is required for a 
very late step in fission of the outer mitochondrial membrane 
suggesting that mitochondria are transported along microtubules, 
as in mammalian cells, rather than along actin filaments, 
as in budding yeast. Disruption of the protein-impaired 
cytokinesis and caused mitochondria to cluster at the cell 
centre. It is likely that CLU functions in a novel pathway 
that positions mitochondria within the cell based on their physiological 
state. Disruption of the CLU pathway may enhance 
oxidative damage, alter gene expression, cause mitochondria 
to cluster at microtubule plus ends, and lead eventually to 
mitochondrial failure.
Length=225

 Score = 327 bits (840),  Expect = 3e-104, Method: Composition-based stats.
 Identities = 116/225 (52%), Positives = 151/225 (67%), Gaps = 2/225 (1%)

Query  344  DWNEEFQTTRELPRETVQDRVFRERLTSKLFADYNEAAARGAVLVARGEVAPLNPTEERD  403
            DWNEEFQ+ RELPRET+Q+R+ RERL SKL +D+ EAA +GA  +  G V PLNP E   
Sbjct  1    DWNEEFQSLRELPRETLQERLLRERLLSKLASDFVEAATKGAKAIIDGNVLPLNPKEPPG  60

Query  404  AQIFVYNNIFYSFGADGVGTFVSEGGDEAARVAVGKDVLGIKAVNQLDINGLFTPGTVVV  463
               ++YNNIF+SF  D  GT+ S GGDEAAR A GKD+ G+KA+N+LDI GL T  T +V
Sbjct  61   GHKYLYNNIFFSFAVDVRGTYPSLGGDEAARKAAGKDLKGVKALNRLDIPGLHTLLTAIV  120

Query  464  DYLGKRIVGQSIVPGIFKQREPGE--HQIDYGGVEGKDVVATHPDFVSVFEKMSKALRIK  521
            DY G R++ QSI+PGI  + E       I YG  +G   V +  +F  + +K++KAL +K
Sbjct  121  DYRGYRLIAQSILPGILSRDEETIEKDTIVYGSSDGGKTVHSDEEFHELLKKIAKALNLK  180

Query  522  KHPVWDKEGKRHDLEGSVETKGLLGTDGRKYVLDLYRVTPLDVVW  566
             H V D +GK  +L GS + KG+ GTDGR YVLDL R+ P DV +
Sbjct  181  PHKVGDADGKPVELYGSADIKGIKGTDGRYYVLDLARLFPPDVNF  225


>CDD:463717 pfam12807, eIF3_p135, Translation initiation factor eIF3 subunit 
135.  Translation initiation factor eIF3 is a multi-subunit 
protein complex required for initiation of protein biosynthesis 
in eukaryotic cells. The complex promotes ribosome dissociation, 
the binding of the initiator methionyl-tRNA to 
the 40 S ribosomal subunit, and mRNA recruitment to the ribosome. 
The protein product from TIF31 genes in yeast is p135 
which associates with the eIF3 but does not seem to be necessary 
for protein translation initiation.
Length=168

 Score = 269 bits (689),  Expect = 6e-84, Method: Composition-based stats.
 Identities = 87/168 (52%), Positives = 121/168 (72%), Gaps = 3/168 (2%)

Query  704  VGFPMDGRSLSQLLHKRGINIRYLGKLAQLSK--EKGSRLEALTTLLVQEMIARAFKHIA  761
              FPMDG+SL++ LHKRGIN+RYLGK+A+        +RLE L  L VQEMIARA KHI 
Sbjct  1    SSFPMDGQSLTEALHKRGINMRYLGKIAKKLSKSPNKARLEHLKRLCVQEMIARAAKHIL  60

Query  762  NRYLRNVPAPFVASCVAHLLNCLLGADVNPKPSAEIDASLREIYPEGDFSFEKVTPETLR  821
             +YLR VP P +++ V+H LNCLLG+ +NPKP+AEID  L+ +Y + + ++ K+TPE+L 
Sbjct  61   RKYLRGVPPPLLSAAVSHFLNCLLGSSLNPKPTAEIDELLKGLYKKKNRAWAKLTPESLW  120

Query  822  AEVEKQVTVRYRYTLETEWF-SSLRHLQLLRDIAIKLGLQLGARDYAF  868
             E+E++V  R+RY L  +W  S L+ + LLR+I +K G+QL AR+Y F
Sbjct  121  EEIEQEVKSRFRYELPEDWVDSGLQKISLLREICLKTGIQLLAREYNF  168


>CDD:464466 pfam15044, CLU_N, Mitochondrial function, CLU-N-term.  CLU_N 
is the N-terminal domain of the Clueless protein, also known 
as TIF31-like in other organisms. The function of this domain 
is not known. It family is found in association with pfam13236.
Length=79

 Score = 111 bits (279),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 37/78 (47%), Positives = 53/78 (68%), Gaps = 5/78 (6%)

Query  62   QEQVQDVRQSIVELPSTFQYTCFHLEF---NGKRINDFVELSEV--EGLKADSEIVLVED  116
             E VQD+RQ + ELP+T   T +HLE+   NG+R+N+FV LSE+  E    + ++ L E 
Sbjct  2    SETVQDLRQVLSELPATKYLTNYHLEYQNGNGERLNEFVTLSEIIEELDVDELKLQLKEK  61

Query  117  PYTEKEARMHVVRFRDLV  134
            PYTE+EA  HV+RFR+ +
Sbjct  62   PYTEREALEHVLRFREFI  79


>CDD:315987 pfam13424, TPR_12, Tetratricopeptide repeat.  
Length=77

 Score = 58.9 bits (143),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 20/77 (26%), Positives = 38/77 (49%), Gaps = 0/77 (0%)

Query  1021  DTILAYLNLSLFEHASGNTKTALVYIKHAMDLWKIIYGSNHPDSITTMNNAAVMLQHLKQ  1080
             D   A  NL+      G    AL  ++ A+++ + + G +HP + TT+ N   +   L +
Sbjct  1     DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGR  60

Query  1081  YSDSRKWFEASLAVCES  1097
             Y ++ +  E +LA+ E 
Sbjct  61    YEEALELLERALALAEK  77


 Score = 57.8 bits (140),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 0/75 (0%)

Query  1063  DSITTMNNAAVMLQHLKQYSDSRKWFEASLAVCESLFGKQSINTATILFQLAQALALDQD  1122
             D  T +NN A +L+ L +Y ++ +  E +L +   L G     TAT L  L +       
Sbjct  1     DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGR  60

Query  1123  SKGAVGKMRDAYNIF  1137
              + A+  +  A  + 
Sbjct  61    YEEALELLERALALA  75



Lambda      K        H        a         alpha
   0.313    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1596856000


Query= TCONS_00022516

Length=1310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463814 pfam13236, CLU, Clustered mitochondria. The CLU domain...  327     5e-104
CDD:463717 pfam12807, eIF3_p135, Translation initiation factor eI...  267     2e-83 
CDD:464466 pfam15044, CLU_N, Mitochondrial function, CLU-N-term. ...  110     1e-29 
CDD:315987 pfam13424, TPR_12, Tetratricopeptide repeat                58.6    3e-11 


>CDD:463814 pfam13236, CLU, Clustered mitochondria.  The CLU domain (CLUstered 
mitochondria) is a eukaryotic domain found in proteins 
from fungi, protozoa, plants to humans. It is required for 
correct functioning of the mitochondria and mitochondrial transport 
although the exact function of the domain is unknown. 
In Dictyostelium the full-length protein is required for a 
very late step in fission of the outer mitochondrial membrane 
suggesting that mitochondria are transported along microtubules, 
as in mammalian cells, rather than along actin filaments, 
as in budding yeast. Disruption of the protein-impaired 
cytokinesis and caused mitochondria to cluster at the cell 
centre. It is likely that CLU functions in a novel pathway 
that positions mitochondria within the cell based on their physiological 
state. Disruption of the CLU pathway may enhance 
oxidative damage, alter gene expression, cause mitochondria 
to cluster at microtubule plus ends, and lead eventually to 
mitochondrial failure.
Length=225

 Score = 327 bits (840),  Expect = 5e-104, Method: Composition-based stats.
 Identities = 116/225 (52%), Positives = 151/225 (67%), Gaps = 2/225 (1%)

Query  396  DWNEEFQTTRELPRETVQDRVFRERLTSKLFADYNEAAARGAVLVARGEVAPLNPTEERD  455
            DWNEEFQ+ RELPRET+Q+R+ RERL SKL +D+ EAA +GA  +  G V PLNP E   
Sbjct  1    DWNEEFQSLRELPRETLQERLLRERLLSKLASDFVEAATKGAKAIIDGNVLPLNPKEPPG  60

Query  456  AQIFVYNNIFYSFGADGVGTFVSEGGDEAARVAVGKDVLGIKAVNQLDINGLFTPGTVVV  515
               ++YNNIF+SF  D  GT+ S GGDEAAR A GKD+ G+KA+N+LDI GL T  T +V
Sbjct  61   GHKYLYNNIFFSFAVDVRGTYPSLGGDEAARKAAGKDLKGVKALNRLDIPGLHTLLTAIV  120

Query  516  DYLGKRIVGQSIVPGIFKQREPGE--HQIDYGGVEGKDVVATHPDFVSVFEKMSKALRIK  573
            DY G R++ QSI+PGI  + E       I YG  +G   V +  +F  + +K++KAL +K
Sbjct  121  DYRGYRLIAQSILPGILSRDEETIEKDTIVYGSSDGGKTVHSDEEFHELLKKIAKALNLK  180

Query  574  KHPVWDKEGKRHDLEGSVETKGLLGTDGRKYVLDLYRVTPLDVVW  618
             H V D +GK  +L GS + KG+ GTDGR YVLDL R+ P DV +
Sbjct  181  PHKVGDADGKPVELYGSADIKGIKGTDGRYYVLDLARLFPPDVNF  225


>CDD:463717 pfam12807, eIF3_p135, Translation initiation factor eIF3 subunit 
135.  Translation initiation factor eIF3 is a multi-subunit 
protein complex required for initiation of protein biosynthesis 
in eukaryotic cells. The complex promotes ribosome dissociation, 
the binding of the initiator methionyl-tRNA to 
the 40 S ribosomal subunit, and mRNA recruitment to the ribosome. 
The protein product from TIF31 genes in yeast is p135 
which associates with the eIF3 but does not seem to be necessary 
for protein translation initiation.
Length=168

 Score = 267 bits (685),  Expect = 2e-83, Method: Composition-based stats.
 Identities = 87/168 (52%), Positives = 121/168 (72%), Gaps = 3/168 (2%)

Query  756  VGFPMDGRSLSQLLHKRGINIRYLGKLAQLSK--EKGSRLEALTTLLVQEMIARAFKHIA  813
              FPMDG+SL++ LHKRGIN+RYLGK+A+        +RLE L  L VQEMIARA KHI 
Sbjct  1    SSFPMDGQSLTEALHKRGINMRYLGKIAKKLSKSPNKARLEHLKRLCVQEMIARAAKHIL  60

Query  814  NRYLRNVPAPFVASCVAHLLNCLLGADVNPKPSAEIDASLREIYPEGDFSFEKVTPETLR  873
             +YLR VP P +++ V+H LNCLLG+ +NPKP+AEID  L+ +Y + + ++ K+TPE+L 
Sbjct  61   RKYLRGVPPPLLSAAVSHFLNCLLGSSLNPKPTAEIDELLKGLYKKKNRAWAKLTPESLW  120

Query  874  AEVEKQVTVRYRYTLETEWF-SSLRHLQLLRDIAIKLGLQLGARDYAF  920
             E+E++V  R+RY L  +W  S L+ + LLR+I +K G+QL AR+Y F
Sbjct  121  EEIEQEVKSRFRYELPEDWVDSGLQKISLLREICLKTGIQLLAREYNF  168


>CDD:464466 pfam15044, CLU_N, Mitochondrial function, CLU-N-term.  CLU_N 
is the N-terminal domain of the Clueless protein, also known 
as TIF31-like in other organisms. The function of this domain 
is not known. It family is found in association with pfam13236.
Length=79

 Score = 110 bits (278),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 37/78 (47%), Positives = 53/78 (68%), Gaps = 5/78 (6%)

Query  114  QEQVQDVRQSIVELPSTFQYTCFHLEF---NGKRINDFVELSEV--EGLKADSEIVLVED  168
             E VQD+RQ + ELP+T   T +HLE+   NG+R+N+FV LSE+  E    + ++ L E 
Sbjct  2    SETVQDLRQVLSELPATKYLTNYHLEYQNGNGERLNEFVTLSEIIEELDVDELKLQLKEK  61

Query  169  PYTEKEARMHVVRFRDLV  186
            PYTE+EA  HV+RFR+ +
Sbjct  62   PYTEREALEHVLRFREFI  79


>CDD:315987 pfam13424, TPR_12, Tetratricopeptide repeat.  
Length=77

 Score = 58.6 bits (142),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 20/77 (26%), Positives = 38/77 (49%), Gaps = 0/77 (0%)

Query  1073  DTILAYLNLSLFEHASGNTKTALVYIKHAMDLWKIIYGSNHPDSITTMNNAAVMLQHLKQ  1132
             D   A  NL+      G    AL  ++ A+++ + + G +HP + TT+ N   +   L +
Sbjct  1     DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGR  60

Query  1133  YSDSRKWFEASLAVCES  1149
             Y ++ +  E +LA+ E 
Sbjct  61    YEEALELLERALALAEK  77


 Score = 57.8 bits (140),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 0/75 (0%)

Query  1115  DSITTMNNAAVMLQHLKQYSDSRKWFEASLAVCESLFGKQSINTATILFQLAQALALDQD  1174
             D  T +NN A +L+ L +Y ++ +  E +L +   L G     TAT L  L +       
Sbjct  1     DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGR  60

Query  1175  SKGAVGKMRDAYNIF  1189
              + A+  +  A  + 
Sbjct  61    YEEALELLERALALA  75



Lambda      K        H        a         alpha
   0.315    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1668439200


Query= TCONS_00022517

Length=940


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1194999344


Query= TCONS_00022518

Length=940


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1194999344


Query= TCONS_00022520

Length=940


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1194999344


Query= TCONS_00022519

Length=940


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0751    0.140     1.90     42.6     43.6 

Effective search space used: 1194999344


Query= TCONS_00022521

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  93.9    2e-24


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 93.9 bits (234),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 1/122 (1%)

Query  163  TGTMATVNLIPLILLAGRNNPLIKLLEVPYDTFNLIHRWLARIVVFETLAHVFAWAIPKA  222
             G +A   L  L+LLA RNNPL  L  + YD   L HRWL R+     L HV  + I   
Sbjct  1    LGILALALLPLLLLLALRNNPLEWLTGLSYDRLLLFHRWLGRLAFLLALLHVILYLIYWL  60

Query  223  QKIGWDIVGTIFGKSTFILTGLIAACAFVGLMVHSPSPIRHAFYETFLHLHIAMAIVSMV  282
            +     I+  +  K  + + G+IA    V L + S  P R   YE FL+LHI +A+  ++
Sbjct  61   RFSLEGILDLLL-KRPYNILGIIALVLLVLLAITSLPPFRRLSYELFLYLHILLAVAFLL  119

Query  283  GL  284
             +
Sbjct  120  LV  121



Lambda      K        H        a         alpha
   0.329    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00022522

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  103     1e-26
CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding...  77.4    2e-17
CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               65.8    9e-14


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 103 bits (258),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 1/122 (1%)

Query  163  TGTMATVNLIPLILLAGRNNPLIKLLEVPYDTFNLIHRWLARIVVFETLAHVFAWAIPKA  222
             G +A   L  L+LLA RNNPL  L  + YD   L HRWL R+     L HV  + I   
Sbjct  1    LGILALALLPLLLLLALRNNPLEWLTGLSYDRLLLFHRWLGRLAFLLALLHVILYLIYWL  60

Query  223  QKIGWDIVGTIFGKSTFILTGLIAACAFVGLMVHSPSPIRHAFYETFLHLHIAMAIVSMV  282
            +     I+  +  K  + + G+IA    V L + S  P R   YE FL+LHI +A+  ++
Sbjct  61   RFSLEGILDLLL-KRPYNILGIIALVLLVLLAITSLPPFRRLSYELFLYLHILLAVAFLL  119

Query  283  GL  284
             +
Sbjct  120  LV  121


>CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain. 
 
Length=149

 Score = 77.4 bits (191),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 62/153 (41%), Gaps = 24/153 (16%)

Query  447  YGTVVLFAGGVGITHQVPFVRHLVKGYAEGTVAARRVTLVWIIQSPEHLEWIRPWMTSIL  506
            Y  V+L AGG+GIT  +  ++ L  G     +  +++   W+++    LEW +  +  + 
Sbjct  1    YENVLLVAGGIGITPFISILKDL--GNKSKKLKTKKIKFYWVVRDLSSLEWFKDVLNELE  58

Query  507  AMDRRREVLRIMLFITRPRNTKEIQSPSAT-------------------VQMFPGRPNID  547
             +      + I +++T     ++    S +                   V+   GRPN  
Sbjct  59   ELK--ELNIEIHIYLTGEYEAEDASDQSDSSIRSENFDSLMNEVIGVDFVEFHFGRPNWK  116

Query  548  TLIGMEVENQIGA-MGVLVCGNGSLSDDVRRVC  579
             ++    +      +GV  CG  SL D++R + 
Sbjct  117  EVLKDIAKQHPNGSIGVFSCGPPSLVDELRNLV  149


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 65.8 bits (161),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 27/114 (24%), Positives = 51/114 (45%), Gaps = 28/114 (25%)

Query  333  PGEAMRITL-KMARPWTFKPGQHIYLYI-PSIGLWTSHPFSVGWSESEEVVTDEKGMPMT  390
            P   +++ + K  +P+ +KPGQ++++   P +    SHPF++  S       D+K     
Sbjct  13   PDNVLKLRVSKPKKPFKYKPGQYMFINFLPPLSFLQSHPFTIT-SAPS----DDK-----  62

Query  391  RQDVFGMQKTTVSLLVRRRTGFTNKLYQRALSAP-----DSRVTLKAFAEGPYG  439
                       +SL ++ + G+T KL     S+      + +   +   EGPYG
Sbjct  63   -----------LSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIEGPYG  105



Lambda      K        H        a         alpha
   0.327    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 754686140


Query= TCONS_00022523

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00027164

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding...  77.4    8e-18
CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               65.8    4e-14


>CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain. 
 
Length=149

 Score = 77.4 bits (191),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 62/153 (41%), Gaps = 24/153 (16%)

Query  194  YGTVVLFAGGVGITHQVPFVRHLVKGYAEGTVAARRVTLVWIIQSPEHLEWIRPWMTSIL  253
            Y  V+L AGG+GIT  +  ++ L  G     +  +++   W+++    LEW +  +  + 
Sbjct  1    YENVLLVAGGIGITPFISILKDL--GNKSKKLKTKKIKFYWVVRDLSSLEWFKDVLNELE  58

Query  254  AMDRRREVLRIMLFITRPRNTKEIQSPSAT-------------------VQMFPGRPNID  294
             +      + I +++T     ++    S +                   V+   GRPN  
Sbjct  59   ELK--ELNIEIHIYLTGEYEAEDASDQSDSSIRSENFDSLMNEVIGVDFVEFHFGRPNWK  116

Query  295  TLIGMEVENQIGA-MGVLVCGNGSLSDDVRRVC  326
             ++    +      +GV  CG  SL D++R + 
Sbjct  117  EVLKDIAKQHPNGSIGVFSCGPPSLVDELRNLV  149


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 65.8 bits (161),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 27/114 (24%), Positives = 51/114 (45%), Gaps = 28/114 (25%)

Query  80   PGEAMRITL-KMARPWTFKPGQHIYLYI-PSIGLWTSHPFSVGWSESEEVVTDEKGMPMT  137
            P   +++ + K  +P+ +KPGQ++++   P +    SHPF++  S       D+K     
Sbjct  13   PDNVLKLRVSKPKKPFKYKPGQYMFINFLPPLSFLQSHPFTIT-SAPS----DDK-----  62

Query  138  RQDVFGMQKTTVSLLVRRRTGFTNKLYQRALSAP-----DSRVTLKAFAEGPYG  186
                       +SL ++ + G+T KL     S+      + +   +   EGPYG
Sbjct  63   -----------LSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIEGPYG  105



Lambda      K        H        a         alpha
   0.325    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00022524

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  93.9    2e-24


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 93.9 bits (234),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 1/122 (1%)

Query  163  TGTMATVNLIPLILLAGRNNPLIKLLEVPYDTFNLIHRWLARIVVFETLAHVFAWAIPKA  222
             G +A   L  L+LLA RNNPL  L  + YD   L HRWL R+     L HV  + I   
Sbjct  1    LGILALALLPLLLLLALRNNPLEWLTGLSYDRLLLFHRWLGRLAFLLALLHVILYLIYWL  60

Query  223  QKIGWDIVGTIFGKSTFILTGLIAACAFVGLMVHSPSPIRHAFYETFLHLHIAMAIVSMV  282
            +     I+  +  K  + + G+IA    V L + S  P R   YE FL+LHI +A+  ++
Sbjct  61   RFSLEGILDLLL-KRPYNILGIIALVLLVLLAITSLPPFRRLSYELFLYLHILLAVAFLL  119

Query  283  GL  284
             +
Sbjct  120  LV  121



Lambda      K        H        a         alpha
   0.329    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00027165

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding...  77.4    8e-18
CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               65.8    4e-14


>CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain. 
 
Length=149

 Score = 77.4 bits (191),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 62/153 (41%), Gaps = 24/153 (16%)

Query  194  YGTVVLFAGGVGITHQVPFVRHLVKGYAEGTVAARRVTLVWIIQSPEHLEWIRPWMTSIL  253
            Y  V+L AGG+GIT  +  ++ L  G     +  +++   W+++    LEW +  +  + 
Sbjct  1    YENVLLVAGGIGITPFISILKDL--GNKSKKLKTKKIKFYWVVRDLSSLEWFKDVLNELE  58

Query  254  AMDRRREVLRIMLFITRPRNTKEIQSPSAT-------------------VQMFPGRPNID  294
             +      + I +++T     ++    S +                   V+   GRPN  
Sbjct  59   ELK--ELNIEIHIYLTGEYEAEDASDQSDSSIRSENFDSLMNEVIGVDFVEFHFGRPNWK  116

Query  295  TLIGMEVENQIGA-MGVLVCGNGSLSDDVRRVC  326
             ++    +      +GV  CG  SL D++R + 
Sbjct  117  EVLKDIAKQHPNGSIGVFSCGPPSLVDELRNLV  149


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 65.8 bits (161),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 27/114 (24%), Positives = 51/114 (45%), Gaps = 28/114 (25%)

Query  80   PGEAMRITL-KMARPWTFKPGQHIYLYI-PSIGLWTSHPFSVGWSESEEVVTDEKGMPMT  137
            P   +++ + K  +P+ +KPGQ++++   P +    SHPF++  S       D+K     
Sbjct  13   PDNVLKLRVSKPKKPFKYKPGQYMFINFLPPLSFLQSHPFTIT-SAPS----DDK-----  62

Query  138  RQDVFGMQKTTVSLLVRRRTGFTNKLYQRALSAP-----DSRVTLKAFAEGPYG  186
                       +SL ++ + G+T KL     S+      + +   +   EGPYG
Sbjct  63   -----------LSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIEGPYG  105



Lambda      K        H        a         alpha
   0.325    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00022525

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  103     1e-26
CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding...  77.4    2e-17
CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               65.8    9e-14


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 103 bits (258),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 1/122 (1%)

Query  163  TGTMATVNLIPLILLAGRNNPLIKLLEVPYDTFNLIHRWLARIVVFETLAHVFAWAIPKA  222
             G +A   L  L+LLA RNNPL  L  + YD   L HRWL R+     L HV  + I   
Sbjct  1    LGILALALLPLLLLLALRNNPLEWLTGLSYDRLLLFHRWLGRLAFLLALLHVILYLIYWL  60

Query  223  QKIGWDIVGTIFGKSTFILTGLIAACAFVGLMVHSPSPIRHAFYETFLHLHIAMAIVSMV  282
            +     I+  +  K  + + G+IA    V L + S  P R   YE FL+LHI +A+  ++
Sbjct  61   RFSLEGILDLLL-KRPYNILGIIALVLLVLLAITSLPPFRRLSYELFLYLHILLAVAFLL  119

Query  283  GL  284
             +
Sbjct  120  LV  121


>CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain. 
 
Length=149

 Score = 77.4 bits (191),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 62/153 (41%), Gaps = 24/153 (16%)

Query  447  YGTVVLFAGGVGITHQVPFVRHLVKGYAEGTVAARRVTLVWIIQSPEHLEWIRPWMTSIL  506
            Y  V+L AGG+GIT  +  ++ L  G     +  +++   W+++    LEW +  +  + 
Sbjct  1    YENVLLVAGGIGITPFISILKDL--GNKSKKLKTKKIKFYWVVRDLSSLEWFKDVLNELE  58

Query  507  AMDRRREVLRIMLFITRPRNTKEIQSPSAT-------------------VQMFPGRPNID  547
             +      + I +++T     ++    S +                   V+   GRPN  
Sbjct  59   ELK--ELNIEIHIYLTGEYEAEDASDQSDSSIRSENFDSLMNEVIGVDFVEFHFGRPNWK  116

Query  548  TLIGMEVENQIGA-MGVLVCGNGSLSDDVRRVC  579
             ++    +      +GV  CG  SL D++R + 
Sbjct  117  EVLKDIAKQHPNGSIGVFSCGPPSLVDELRNLV  149


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 65.8 bits (161),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 27/114 (24%), Positives = 51/114 (45%), Gaps = 28/114 (25%)

Query  333  PGEAMRITL-KMARPWTFKPGQHIYLYI-PSIGLWTSHPFSVGWSESEEVVTDEKGMPMT  390
            P   +++ + K  +P+ +KPGQ++++   P +    SHPF++  S       D+K     
Sbjct  13   PDNVLKLRVSKPKKPFKYKPGQYMFINFLPPLSFLQSHPFTIT-SAPS----DDK-----  62

Query  391  RQDVFGMQKTTVSLLVRRRTGFTNKLYQRALSAP-----DSRVTLKAFAEGPYG  439
                       +SL ++ + G+T KL     S+      + +   +   EGPYG
Sbjct  63   -----------LSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIEGPYG  105



Lambda      K        H        a         alpha
   0.327    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 754686140


Query= TCONS_00027166

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  103     1e-26
CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding...  77.4    2e-17
CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               65.8    9e-14


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 103 bits (258),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 1/122 (1%)

Query  163  TGTMATVNLIPLILLAGRNNPLIKLLEVPYDTFNLIHRWLARIVVFETLAHVFAWAIPKA  222
             G +A   L  L+LLA RNNPL  L  + YD   L HRWL R+     L HV  + I   
Sbjct  1    LGILALALLPLLLLLALRNNPLEWLTGLSYDRLLLFHRWLGRLAFLLALLHVILYLIYWL  60

Query  223  QKIGWDIVGTIFGKSTFILTGLIAACAFVGLMVHSPSPIRHAFYETFLHLHIAMAIVSMV  282
            +     I+  +  K  + + G+IA    V L + S  P R   YE FL+LHI +A+  ++
Sbjct  61   RFSLEGILDLLL-KRPYNILGIIALVLLVLLAITSLPPFRRLSYELFLYLHILLAVAFLL  119

Query  283  GL  284
             +
Sbjct  120  LV  121


>CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain. 
 
Length=149

 Score = 77.4 bits (191),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 62/153 (41%), Gaps = 24/153 (16%)

Query  447  YGTVVLFAGGVGITHQVPFVRHLVKGYAEGTVAARRVTLVWIIQSPEHLEWIRPWMTSIL  506
            Y  V+L AGG+GIT  +  ++ L  G     +  +++   W+++    LEW +  +  + 
Sbjct  1    YENVLLVAGGIGITPFISILKDL--GNKSKKLKTKKIKFYWVVRDLSSLEWFKDVLNELE  58

Query  507  AMDRRREVLRIMLFITRPRNTKEIQSPSAT-------------------VQMFPGRPNID  547
             +      + I +++T     ++    S +                   V+   GRPN  
Sbjct  59   ELK--ELNIEIHIYLTGEYEAEDASDQSDSSIRSENFDSLMNEVIGVDFVEFHFGRPNWK  116

Query  548  TLIGMEVENQIGA-MGVLVCGNGSLSDDVRRVC  579
             ++    +      +GV  CG  SL D++R + 
Sbjct  117  EVLKDIAKQHPNGSIGVFSCGPPSLVDELRNLV  149


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 65.8 bits (161),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 27/114 (24%), Positives = 51/114 (45%), Gaps = 28/114 (25%)

Query  333  PGEAMRITL-KMARPWTFKPGQHIYLYI-PSIGLWTSHPFSVGWSESEEVVTDEKGMPMT  390
            P   +++ + K  +P+ +KPGQ++++   P +    SHPF++  S       D+K     
Sbjct  13   PDNVLKLRVSKPKKPFKYKPGQYMFINFLPPLSFLQSHPFTIT-SAPS----DDK-----  62

Query  391  RQDVFGMQKTTVSLLVRRRTGFTNKLYQRALSAP-----DSRVTLKAFAEGPYG  439
                       +SL ++ + G+T KL     S+      + +   +   EGPYG
Sbjct  63   -----------LSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIEGPYG  105



Lambda      K        H        a         alpha
   0.327    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 754686140


Query= TCONS_00022526

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding...  77.4    3e-18
CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               65.8    2e-14


>CDD:429792 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain. 
 
Length=149

 Score = 77.4 bits (191),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 62/153 (41%), Gaps = 24/153 (16%)

Query  116  YGTVVLFAGGVGITHQVPFVRHLVKGYAEGTVAARRVTLVWIIQSPEHLEWIRPWMTSIL  175
            Y  V+L AGG+GIT  +  ++ L  G     +  +++   W+++    LEW +  +  + 
Sbjct  1    YENVLLVAGGIGITPFISILKDL--GNKSKKLKTKKIKFYWVVRDLSSLEWFKDVLNELE  58

Query  176  AMDRRREVLRIMLFITRPRNTKEIQSPSAT-------------------VQMFPGRPNID  216
             +      + I +++T     ++    S +                   V+   GRPN  
Sbjct  59   ELK--ELNIEIHIYLTGEYEAEDASDQSDSSIRSENFDSLMNEVIGVDFVEFHFGRPNWK  116

Query  217  TLIGMEVENQIGA-MGVLVCGNGSLSDDVRRVC  248
             ++    +      +GV  CG  SL D++R + 
Sbjct  117  EVLKDIAKQHPNGSIGVFSCGPPSLVDELRNLV  149


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 65.8 bits (161),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 27/114 (24%), Positives = 51/114 (45%), Gaps = 28/114 (25%)

Query  2    PGEAMRITL-KMARPWTFKPGQHIYLYI-PSIGLWTSHPFSVGWSESEEVVTDEKGMPMT  59
            P   +++ + K  +P+ +KPGQ++++   P +    SHPF++  S       D+K     
Sbjct  13   PDNVLKLRVSKPKKPFKYKPGQYMFINFLPPLSFLQSHPFTIT-SAPS----DDK-----  62

Query  60   RQDVFGMQKTTVSLLVRRRTGFTNKLYQRALSAP-----DSRVTLKAFAEGPYG  108
                       +SL ++ + G+T KL     S+      + +   +   EGPYG
Sbjct  63   -----------LSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIEGPYG  105



Lambda      K        H        a         alpha
   0.322    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00027167

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460698 pfam02798, GST_N, Glutathione S-transferase, N-termina...  63.9    5e-14
CDD:433184 pfam13409, GST_N_2, Glutathione S-transferase, N-termi...  63.0    9e-14
CDD:433190 pfam13417, GST_N_3, Glutathione S-transferase, N-termi...  61.9    3e-13


>CDD:460698 pfam02798, GST_N, Glutathione S-transferase, N-terminal domain. 
 Function: conjugation of reduced glutathione to a variety 
of targets. Also included in the alignment, but not GSTs: 
S-crystallins from squid (similarity to GST previously noted); 
eukaryotic elongation factors 1-gamma (not known to have 
GST activity and similarity not previously recognized); HSP26 
family of stress-related proteins including auxin-regulated 
proteins in plants and stringent starvation proteins in E. 
coli (not known to have GST activity and similarity not previously 
recognized). The glutathione molecule binds in a cleft 
between the N- and C-terminal domains - the catalytically 
important residues are proposed to reside in the N-terminal 
domain.
Length=76

 Score = 63.9 bits (156),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 29/81 (36%), Positives = 44/81 (54%), Gaps = 6/81 (7%)

Query  30   PDITLYTTQT-PNGIKISIALEELGLPYKVEKIDISKNTQKEPWFLEINPNGRIPALTDT  88
              +TLY  +  P   +I   L E G+ Y++  +D     +K P  L++NP G++PAL D 
Sbjct  1    MVLTLYGIRGSPRAHRIRWLLAEKGVEYEIVPLDFGAGPEKSPELLKLNPLGKVPALED-  59

Query  89   FTDGQKIRLFESGSILTYLAE  109
               G+K  L ES +IL Y+A 
Sbjct  60   --GGKK--LTESRAILEYIAR  76


>CDD:433184 pfam13409, GST_N_2, Glutathione S-transferase, N-terminal domain. 
 This family is closely related to pfam02798.
Length=68

 Score = 63.0 bits (154),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 38/71 (54%), Gaps = 5/71 (7%)

Query  40   PNGIKISIALEELGLPYKVEKIDISKNTQKEPWFLEINPNGRIPALTDTFTDGQKIRLFE  99
            P   ++ +ALEE GLPY++E +D+     K P  L +NP G +P L     DG    L +
Sbjct  3    PFSHRVRLALEEKGLPYEIELVDL-DPKDKPPELLALNPLGTVPVLVL--PDGT--VLTD  57

Query  100  SGSILTYLAEQ  110
            S  IL YL E 
Sbjct  58   SLVILEYLEEL  68


>CDD:433190 pfam13417, GST_N_3, Glutathione S-transferase, N-terminal domain. 
 
Length=75

 Score = 61.9 bits (151),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 35/73 (48%), Gaps = 8/73 (11%)

Query  40   PNGIKISIALEELGLPYKVEKIDISKNTQKEPWFLEINPNGRIPALTDTFTDGQKIRLFE  99
            P   ++ IAL E GLPY+   I         P  L  NP G++P L D   DG    L E
Sbjct  8    PYARRVRIALNEKGLPYEFVPIPP---GDHPPELLAKNPLGKVPVLED---DGGI--LCE  59

Query  100  SGSILTYLAEQYD  112
            S +I+ YL E Y 
Sbjct  60   SLAIIDYLEELYP  72



Lambda      K        H        a         alpha
   0.318    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00022528

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin dom...  180     2e-55


>CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin domain.  This 
domain, approximately 100 residues in length, is mainly 
found in splicing factor 1 from yeast to human. It is a helix-hairpin 
domain, which forms a secondary, hydrophobic interface 
with U2AF65(UHM) to lock the orientation of the two subunits, 
which is essential for cooperative formation of the ternary 
SF1-U2AF65-RNA complex. In this domain, it contains a 
highly conserved SPSP motif in its C terminal and phophorylation 
of SPSP motif induces a disorder-to-order transition within 
a novel SF1/U2AF65 interface, indicating a phosphorylation-dependent 
control of pre-mRNA splicing factors.
Length=114

 Score = 180 bits (460),  Expect = 2e-55, Method: Composition-based stats.
 Identities = 60/114 (53%), Positives = 81/114 (71%), Gaps = 3/114 (3%)

Query  66   KRNRWG-DAQENKAAGLMGLPTMIMANFTNEQLEAYTLHLRIEEISQKLRINDVV--PAD  122
            +++RWG + ++     + GLPT I    T EQL+AY L  RIEEI++KLR  D+   P+ 
Sbjct  1    RKSRWGGEPEKTDKPPIPGLPTAIPGGLTPEQLDAYLLQFRIEEITRKLRTGDLGVPPSP  60

Query  123  GDRSPSPPPQYDNFGRRVNTREYRYRKRLEDERHKLVEKAMKTIPNYHPPSDYR  176
             +RSPSPPP YD  G+R NTRE RYRK+LE ERH+L+E+AMK  PN+ PP+DY+
Sbjct  61   EERSPSPPPIYDANGKRTNTREVRYRKKLEKERHRLIEEAMKINPNFRPPADYK  114



Lambda      K        H        a         alpha
   0.312    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00022527

Length=355


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.136    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00027168

Length=105
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433184 pfam13409, GST_N_2, Glutathione S-transferase, N-termi...  53.0    2e-11


>CDD:433184 pfam13409, GST_N_2, Glutathione S-transferase, N-terminal domain. 
 This family is closely related to pfam02798.
Length=68

 Score = 53.0 bits (128),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 19/48 (40%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query  40  PNGIKISIALEELGLPYKVEKIDISKNTQKEPWFLEINPNGRIPALTD  87
           P   ++ +ALEE GLPY++E +D+     K P  L +NP G +P L  
Sbjct  3   PFSHRVRLALEEKGLPYEIELVDL-DPKDKPPELLALNPLGTVPVLVL  49



Lambda      K        H        a         alpha
   0.318    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00022529

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00027169

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00027171

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin dom...  180     2e-55


>CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin domain.  This 
domain, approximately 100 residues in length, is mainly 
found in splicing factor 1 from yeast to human. It is a helix-hairpin 
domain, which forms a secondary, hydrophobic interface 
with U2AF65(UHM) to lock the orientation of the two subunits, 
which is essential for cooperative formation of the ternary 
SF1-U2AF65-RNA complex. In this domain, it contains a 
highly conserved SPSP motif in its C terminal and phophorylation 
of SPSP motif induces a disorder-to-order transition within 
a novel SF1/U2AF65 interface, indicating a phosphorylation-dependent 
control of pre-mRNA splicing factors.
Length=114

 Score = 180 bits (459),  Expect = 2e-55, Method: Composition-based stats.
 Identities = 60/114 (53%), Positives = 81/114 (71%), Gaps = 3/114 (3%)

Query  66   KRNRWG-DAQENKAAGLMGLPTMIMANFTNEQLEAYTLHLRIEEISQKLRINDVV--PAD  122
            +++RWG + ++     + GLPT I    T EQL+AY L  RIEEI++KLR  D+   P+ 
Sbjct  1    RKSRWGGEPEKTDKPPIPGLPTAIPGGLTPEQLDAYLLQFRIEEITRKLRTGDLGVPPSP  60

Query  123  GDRSPSPPPQYDNFGRRVNTREYRYRKRLEDERHKLVEKAMKTIPNYHPPSDYR  176
             +RSPSPPP YD  G+R NTRE RYRK+LE ERH+L+E+AMK  PN+ PP+DY+
Sbjct  61   EERSPSPPPIYDANGKRTNTREVRYRKKLEKERHRLIEEAMKINPNFRPPADYK  114



Lambda      K        H        a         alpha
   0.312    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00027170

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin dom...  181     1e-55


>CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin domain.  This 
domain, approximately 100 residues in length, is mainly 
found in splicing factor 1 from yeast to human. It is a helix-hairpin 
domain, which forms a secondary, hydrophobic interface 
with U2AF65(UHM) to lock the orientation of the two subunits, 
which is essential for cooperative formation of the ternary 
SF1-U2AF65-RNA complex. In this domain, it contains a 
highly conserved SPSP motif in its C terminal and phophorylation 
of SPSP motif induces a disorder-to-order transition within 
a novel SF1/U2AF65 interface, indicating a phosphorylation-dependent 
control of pre-mRNA splicing factors.
Length=114

 Score = 181 bits (461),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 60/114 (53%), Positives = 81/114 (71%), Gaps = 3/114 (3%)

Query  66   KRNRWG-DAQENKAAGLMGLPTMIMANFTNEQLEAYTLHLRIEEISQKLRINDVV--PAD  122
            +++RWG + ++     + GLPT I    T EQL+AY L  RIEEI++KLR  D+   P+ 
Sbjct  1    RKSRWGGEPEKTDKPPIPGLPTAIPGGLTPEQLDAYLLQFRIEEITRKLRTGDLGVPPSP  60

Query  123  GDRSPSPPPQYDNFGRRVNTREYRYRKRLEDERHKLVEKAMKTIPNYHPPSDYR  176
             +RSPSPPP YD  G+R NTRE RYRK+LE ERH+L+E+AMK  PN+ PP+DY+
Sbjct  61   EERSPSPPPIYDANGKRTNTREVRYRKKLEKERHRLIEEAMKINPNFRPPADYK  114



Lambda      K        H        a         alpha
   0.313    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 714336584


Query= TCONS_00022530

Length=404


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.136    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00027172

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin dom...  71.5    2e-17


>CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin domain.  This 
domain, approximately 100 residues in length, is mainly 
found in splicing factor 1 from yeast to human. It is a helix-hairpin 
domain, which forms a secondary, hydrophobic interface 
with U2AF65(UHM) to lock the orientation of the two subunits, 
which is essential for cooperative formation of the ternary 
SF1-U2AF65-RNA complex. In this domain, it contains a 
highly conserved SPSP motif in its C terminal and phophorylation 
of SPSP motif induces a disorder-to-order transition within 
a novel SF1/U2AF65 interface, indicating a phosphorylation-dependent 
control of pre-mRNA splicing factors.
Length=114

 Score = 71.5 bits (176),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 39/63 (62%), Gaps = 3/63 (5%)

Query  66   KRNRWG-DAQENKAAGLMGLPTMIMANFTNEQLEAYTLHLRIEEISQKLRINDVV--PAD  122
            +++RWG + ++     + GLPT I    T EQL+AY L  RIEEI++KLR  D+   P+ 
Sbjct  1    RKSRWGGEPEKTDKPPIPGLPTAIPGGLTPEQLDAYLLQFRIEEITRKLRTGDLGVPPSP  60

Query  123  GDR  125
             +R
Sbjct  61   EER  63



Lambda      K        H        a         alpha
   0.323    0.140    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00027173

Length=355


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.136    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00027174

Length=242
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin dom...  173     3e-56


>CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin domain.  This 
domain, approximately 100 residues in length, is mainly 
found in splicing factor 1 from yeast to human. It is a helix-hairpin 
domain, which forms a secondary, hydrophobic interface 
with U2AF65(UHM) to lock the orientation of the two subunits, 
which is essential for cooperative formation of the ternary 
SF1-U2AF65-RNA complex. In this domain, it contains a 
highly conserved SPSP motif in its C terminal and phophorylation 
of SPSP motif induces a disorder-to-order transition within 
a novel SF1/U2AF65 interface, indicating a phosphorylation-dependent 
control of pre-mRNA splicing factors.
Length=114

 Score = 173 bits (441),  Expect = 3e-56, Method: Composition-based stats.
 Identities = 60/114 (53%), Positives = 81/114 (71%), Gaps = 3/114 (3%)

Query  66   KRNRWG-DAQENKAAGLMGLPTMIMANFTNEQLEAYTLHLRIEEISQKLRINDVV--PAD  122
            +++RWG + ++     + GLPT I    T EQL+AY L  RIEEI++KLR  D+   P+ 
Sbjct  1    RKSRWGGEPEKTDKPPIPGLPTAIPGGLTPEQLDAYLLQFRIEEITRKLRTGDLGVPPSP  60

Query  123  GDRSPSPPPQYDNFGRRVNTREYRYRKRLEDERHKLVEKAMKTIPNYHPPSDYR  176
             +RSPSPPP YD  G+R NTRE RYRK+LE ERH+L+E+AMK  PN+ PP+DY+
Sbjct  61   EERSPSPPPIYDANGKRTNTREVRYRKKLEKERHRLIEEAMKINPNFRPPADYK  114



Lambda      K        H        a         alpha
   0.315    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00027175

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin dom...  180     5e-56


>CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin domain.  This 
domain, approximately 100 residues in length, is mainly 
found in splicing factor 1 from yeast to human. It is a helix-hairpin 
domain, which forms a secondary, hydrophobic interface 
with U2AF65(UHM) to lock the orientation of the two subunits, 
which is essential for cooperative formation of the ternary 
SF1-U2AF65-RNA complex. In this domain, it contains a 
highly conserved SPSP motif in its C terminal and phophorylation 
of SPSP motif induces a disorder-to-order transition within 
a novel SF1/U2AF65 interface, indicating a phosphorylation-dependent 
control of pre-mRNA splicing factors.
Length=114

 Score = 180 bits (459),  Expect = 5e-56, Method: Composition-based stats.
 Identities = 60/114 (53%), Positives = 81/114 (71%), Gaps = 3/114 (3%)

Query  66   KRNRWG-DAQENKAAGLMGLPTMIMANFTNEQLEAYTLHLRIEEISQKLRINDVV--PAD  122
            +++RWG + ++     + GLPT I    T EQL+AY L  RIEEI++KLR  D+   P+ 
Sbjct  1    RKSRWGGEPEKTDKPPIPGLPTAIPGGLTPEQLDAYLLQFRIEEITRKLRTGDLGVPPSP  60

Query  123  GDRSPSPPPQYDNFGRRVNTREYRYRKRLEDERHKLVEKAMKTIPNYHPPSDYR  176
             +RSPSPPP YD  G+R NTRE RYRK+LE ERH+L+E+AMK  PN+ PP+DY+
Sbjct  61   EERSPSPPPIYDANGKRTNTREVRYRKKLEKERHRLIEEAMKINPNFRPPADYK  114



Lambda      K        H        a         alpha
   0.314    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00022531

Length=584
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin dom...  181     1e-55


>CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin domain.  This 
domain, approximately 100 residues in length, is mainly 
found in splicing factor 1 from yeast to human. It is a helix-hairpin 
domain, which forms a secondary, hydrophobic interface 
with U2AF65(UHM) to lock the orientation of the two subunits, 
which is essential for cooperative formation of the ternary 
SF1-U2AF65-RNA complex. In this domain, it contains a 
highly conserved SPSP motif in its C terminal and phophorylation 
of SPSP motif induces a disorder-to-order transition within 
a novel SF1/U2AF65 interface, indicating a phosphorylation-dependent 
control of pre-mRNA splicing factors.
Length=114

 Score = 181 bits (462),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 60/114 (53%), Positives = 81/114 (71%), Gaps = 3/114 (3%)

Query  66   KRNRWG-DAQENKAAGLMGLPTMIMANFTNEQLEAYTLHLRIEEISQKLRINDVV--PAD  122
            +++RWG + ++     + GLPT I    T EQL+AY L  RIEEI++KLR  D+   P+ 
Sbjct  1    RKSRWGGEPEKTDKPPIPGLPTAIPGGLTPEQLDAYLLQFRIEEITRKLRTGDLGVPPSP  60

Query  123  GDRSPSPPPQYDNFGRRVNTREYRYRKRLEDERHKLVEKAMKTIPNYHPPSDYR  176
             +RSPSPPP YD  G+R NTRE RYRK+LE ERH+L+E+AMK  PN+ PP+DY+
Sbjct  61   EERSPSPPPIYDANGKRTNTREVRYRKKLEKERHRLIEEAMKINPNFRPPADYK  114



Lambda      K        H        a         alpha
   0.313    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 735258576


Query= TCONS_00027176

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00022532

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin dom...  180     1e-55


>CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin domain.  This 
domain, approximately 100 residues in length, is mainly 
found in splicing factor 1 from yeast to human. It is a helix-hairpin 
domain, which forms a secondary, hydrophobic interface 
with U2AF65(UHM) to lock the orientation of the two subunits, 
which is essential for cooperative formation of the ternary 
SF1-U2AF65-RNA complex. In this domain, it contains a 
highly conserved SPSP motif in its C terminal and phophorylation 
of SPSP motif induces a disorder-to-order transition within 
a novel SF1/U2AF65 interface, indicating a phosphorylation-dependent 
control of pre-mRNA splicing factors.
Length=114

 Score = 180 bits (460),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 60/114 (53%), Positives = 81/114 (71%), Gaps = 3/114 (3%)

Query  66   KRNRWG-DAQENKAAGLMGLPTMIMANFTNEQLEAYTLHLRIEEISQKLRINDVV--PAD  122
            +++RWG + ++     + GLPT I    T EQL+AY L  RIEEI++KLR  D+   P+ 
Sbjct  1    RKSRWGGEPEKTDKPPIPGLPTAIPGGLTPEQLDAYLLQFRIEEITRKLRTGDLGVPPSP  60

Query  123  GDRSPSPPPQYDNFGRRVNTREYRYRKRLEDERHKLVEKAMKTIPNYHPPSDYR  176
             +RSPSPPP YD  G+R NTRE RYRK+LE ERH+L+E+AMK  PN+ PP+DY+
Sbjct  61   EERSPSPPPIYDANGKRTNTREVRYRKKLEKERHRLIEEAMKINPNFRPPADYK  114



Lambda      K        H        a         alpha
   0.312    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0820    0.140     1.90     42.6     43.6 

Effective search space used: 696403448


Query= TCONS_00022534

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin dom...  181     8e-56


>CDD:465080 pfam16275, SF1-HH, Splicing factor 1 helix-hairpin domain.  This 
domain, approximately 100 residues in length, is mainly 
found in splicing factor 1 from yeast to human. It is a helix-hairpin 
domain, which forms a secondary, hydrophobic interface 
with U2AF65(UHM) to lock the orientation of the two subunits, 
which is essential for cooperative formation of the ternary 
SF1-U2AF65-RNA complex. In this domain, it contains a 
highly conserved SPSP motif in its C terminal and phophorylation 
of SPSP motif induces a disorder-to-order transition within 
a novel SF1/U2AF65 interface, indicating a phosphorylation-dependent 
control of pre-mRNA splicing factors.
Length=114

 Score = 181 bits (462),  Expect = 8e-56, Method: Composition-based stats.
 Identities = 60/114 (53%), Positives = 81/114 (71%), Gaps = 3/114 (3%)

Query  66   KRNRWG-DAQENKAAGLMGLPTMIMANFTNEQLEAYTLHLRIEEISQKLRINDVV--PAD  122
            +++RWG + ++     + GLPT I    T EQL+AY L  RIEEI++KLR  D+   P+ 
Sbjct  1    RKSRWGGEPEKTDKPPIPGLPTAIPGGLTPEQLDAYLLQFRIEEITRKLRTGDLGVPPSP  60

Query  123  GDRSPSPPPQYDNFGRRVNTREYRYRKRLEDERHKLVEKAMKTIPNYHPPSDYR  176
             +RSPSPPP YD  G+R NTRE RYRK+LE ERH+L+E+AMK  PN+ PP+DY+
Sbjct  61   EERSPSPPPIYDANGKRTNTREVRYRKKLEKERHRLIEEAMKINPNFRPPADYK  114



Lambda      K        H        a         alpha
   0.313    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00022533

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00022535

Length=238


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00027178

Length=348


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00027179

Length=355


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00022536

Length=355


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00022537

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00022538

Length=355


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.136    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00027180

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403800 pfam12708, Pectate_lyase_3, Pectate lyase superfamily ...  55.8    7e-11


>CDD:403800 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein. 
 This family of proteins possesses a beta helical structure 
like Pectate lyase. This family is most closely related to 
glycosyl hydrolase family 28.
Length=213

 Score = 55.8 bits (135),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 19/28 (68%), Positives = 23/28 (82%), Gaps = 0/28 (0%)

Query  75   YRNVRDYGATGDGTADDTAAINRAVSDG  102
            +RNV+DYGA GDG  DDTAAI +A+ DG
Sbjct  1    FRNVKDYGAKGDGVTDDTAAIQKAIDDG  28



Lambda      K        H        a         alpha
   0.323    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00027181

Length=378


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00022539

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460009 pfam00955, HCO3_cotransp, HCO3- transporter family. Th...  171     7e-48


>CDD:460009 pfam00955, HCO3_cotransp, HCO3- transporter family.  This family 
contains Band 3 anion exchange proteins that exchange CL-/HCO3-. 
This family also includes cotransporters of Na+/HCO3-.
Length=497

 Score = 171 bits (436),  Expect = 7e-48, Method: Composition-based stats.
 Identities = 107/420 (25%), Positives = 178/420 (42%), Gaps = 71/420 (17%)

Query  3    EKTKQSYGVNEVLLASVLGAVVFAVFAAQPLVIVGVTGPITVFNYTVYDIVSPRGTPYLA  62
            + T    GV+E +L+  +G ++FA+FA QPL I+G TGP+ VF   ++      G  YL+
Sbjct  53   DATDGYIGVSESILSQAIGGIIFALFAGQPLTILGSTGPLLVFEKILFKFCKDNGLDYLS  112

Query  63   FMCWIGIWSLIMHWILAITNACNGLTYVTRFSCDIFGFYVAFIY----------------  106
            F  WIG+W      +L   +A   + Y+TRF+ +IF   ++ I+                
Sbjct  113  FRAWIGLWLAFFLLLLVAFDASFLVRYITRFTEEIFALLISLIFIYEAFKKLIKIFKKYP  172

Query  107  ------------LQKGIQVLTRQWVQVGEASAYLSIM-----------------------  131
                                T        +  + S++                       
Sbjct  173  LYLNYDCTCVPPSSNNTTNSTLSLSTESSSINWSSLLTNSECTESYGGTLVGSGCGYVPD  232

Query  132  VALL--VLMSG--WVC---GQLGSSTLFQRYVRKFLEDYGTPLTIIFFTGFVHIGHMRDV  184
             ALL  +L  G  W+     Q  +S  F   VR+ + D+  P+ I+       + +   V
Sbjct  233  TALLSLILFLGTFWLAYFLKQFKNSPFFPTKVRRLISDFAVPIAILIMVL---VDYFLGV  289

Query  185  EVATLPTSKAFFPTA-DRDWLVD-FWNISVGDVFLAIPFALLLTILFYFDHNVSSLIAQG  242
                L     F PT  DR W+++ F       +  AI  ALL+TIL + D  ++++I   
Sbjct  290  YTPKLQVPSGFKPTRPDRGWIINPFGKNPWWLILAAILPALLVTILIFMDQQITAVIVNR  349

Query  243  TEFPLRKPAGFHWDIWLLGLTTFIAGILGLPFPNGLIPQAPFHTAALCVTRDVADEDDTN  302
             E  L+K +G+H D++++ +   I  + GLP+      ++  H  +L V  +     +  
Sbjct  350  KENKLKKGSGYHLDLFVVAILNGICSLFGLPWMVAATVRSITHVNSLKVESECVAPGE--  407

Query  303  KGKTIRVTDHVVEQRVSNLAQGLLTLGTMTGPLLIVLHLIPQGVMAGLFFVMGVQALQGN  362
            K K + V     EQRV+ L   +L   ++   +  VL LIP  V+ G+F  MGV +L G 
Sbjct  408  KPKILGVR----EQRVTGLLVFILIGLSVF--MTPVLKLIPMPVLYGVFLYMGVTSLSGI  461



Lambda      K        H        a         alpha
   0.325    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00022540

Length=249


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00022541

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460009 pfam00955, HCO3_cotransp, HCO3- transporter family. Th...  115     2e-28


>CDD:460009 pfam00955, HCO3_cotransp, HCO3- transporter family.  This family 
contains Band 3 anion exchange proteins that exchange CL-/HCO3-. 
This family also includes cotransporters of Na+/HCO3-.
Length=497

 Score = 115 bits (291),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 112/240 (47%), Gaps = 20/240 (8%)

Query  59   VALL--VLMSG--WVC---GQLGSSTLFQRYVRKFLEDYGTPLTIIFFTGFVHIGHMRDV  111
             ALL  +L  G  W+     Q  +S  F   VR+ + D+  P+ I+       + +   V
Sbjct  233  TALLSLILFLGTFWLAYFLKQFKNSPFFPTKVRRLISDFAVPIAILIMVL---VDYFLGV  289

Query  112  EVATLPTSKAFFPTA-DRDWLVD-FWNISVGDVFLAIPFALLLTILFYFDHNVSSLIAQG  169
                L     F PT  DR W+++ F       +  AI  ALL+TIL + D  ++++I   
Sbjct  290  YTPKLQVPSGFKPTRPDRGWIINPFGKNPWWLILAAILPALLVTILIFMDQQITAVIVNR  349

Query  170  TEFPLRKPAGFHWDIWLLGLTTFIAGILGLPFPNGLIPQAPFHTAALCVTRDVADEDDTN  229
             E  L+K +G+H D++++ +   I  + GLP+      ++  H  +L V  +     +  
Sbjct  350  KENKLKKGSGYHLDLFVVAILNGICSLFGLPWMVAATVRSITHVNSLKVESECVAPGE--  407

Query  230  KGKTIRVTDHVVEQRVSNLAQGLLTLGTMTGPLLIVLHLIPQGVMAGLFFVMGVQALQGN  289
            K K + V     EQRV+ L   +L   ++   +  VL LIP  V+ G+F  MGV +L G 
Sbjct  408  KPKILGVR----EQRVTGLLVFILIGLSVF--MTPVLKLIPMPVLYGVFLYMGVTSLSGI  461



Lambda      K        H        a         alpha
   0.325    0.141    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00022543

Length=679
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460009 pfam00955, HCO3_cotransp, HCO3- transporter family. Th...  245     4e-74


>CDD:460009 pfam00955, HCO3_cotransp, HCO3- transporter family.  This family 
contains Band 3 anion exchange proteins that exchange CL-/HCO3-. 
This family also includes cotransporters of Na+/HCO3-.
Length=497

 Score = 245 bits (628),  Expect = 4e-74, Method: Composition-based stats.
 Identities = 130/476 (27%), Positives = 212/476 (45%), Gaps = 79/476 (17%)

Query  98   RLFRGMIKDIKRRAPFYWSDWTDAWDYRVIPATVYMYFANILPALAFSLDMFEKTKQSYG  157
            RLF G+I DIKRR P Y SD+TDA + + + + +++YFA + PA+ F   + + T    G
Sbjct  1    RLFGGLINDIKRRYPHYLSDFTDALNLQCLASIIFLYFACLSPAITFGGLLGDATDGYIG  60

Query  158  VNEVLLASVLGAVVFAVFAAQPLVIVGVTGPITVFNYTVYDIVSPRGTPYLAFMCWIGIW  217
            V+E +L+  +G ++FA+FA QPL I+G TGP+ VF   ++      G  YL+F  WIG+W
Sbjct  61   VSESILSQAIGGIIFALFAGQPLTILGSTGPLLVFEKILFKFCKDNGLDYLSFRAWIGLW  120

Query  218  SLIMHWILAITNACNGLTYVTRFSCDIFGFYVAFIY------------------------  253
                  +L   +A   + Y+TRF+ +IF   ++ I+                        
Sbjct  121  LAFFLLLLVAFDASFLVRYITRFTEEIFALLISLIFIYEAFKKLIKIFKKYPLYLNYDCT  180

Query  254  ----LQKGIQVLTRQWVQVGEASAYLSIM-----------------------VALL--VL  284
                        T        +  + S++                        ALL  +L
Sbjct  181  CVPPSSNNTTNSTLSLSTESSSINWSSLLTNSECTESYGGTLVGSGCGYVPDTALLSLIL  240

Query  285  MSG--WVC---GQLGSSTLFQRYVRKFLEDYGTPLTIIFFTGFVHIGHMRDVEVATLPTS  339
              G  W+     Q  +S  F   VR+ + D+  P+ I+       + +   V    L   
Sbjct  241  FLGTFWLAYFLKQFKNSPFFPTKVRRLISDFAVPIAILIMVL---VDYFLGVYTPKLQVP  297

Query  340  KAFFPTA-DRDWLVD-FWNISVGDVFLAIPFALLLTILFYFDHNVSSLIAQGTEFPLRKP  397
              F PT  DR W+++ F       +  AI  ALL+TIL + D  ++++I    E  L+K 
Sbjct  298  SGFKPTRPDRGWIINPFGKNPWWLILAAILPALLVTILIFMDQQITAVIVNRKENKLKKG  357

Query  398  AGFHWDIWLLGLTTFIAGILGLPFPNGLIPQAPFHTAALCVTRDVADEDDTN----KGKT  453
            +G+H D++++ +   I  + GLP+      ++  H  +L        E +      K K 
Sbjct  358  SGYHLDLFVVAILNGICSLFGLPWMVAATVRSITHVNSL------KVESECVAPGEKPKI  411

Query  454  IRVTDHVVEQRVSNLAQGLLTLGTMTGPLLIVLHLIPQGVMAGLFFVMGVQALQGN  509
            + V     EQRV+ L   +L   ++   +  VL LIP  V+ G+F  MGV +L G 
Sbjct  412  LGVR----EQRVTGLLVFILIGLSVF--MTPVLKLIPMPVLYGVFLYMGVTSLSGI  461



Lambda      K        H        a         alpha
   0.324    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 864226940


Query= TCONS_00027182

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460009 pfam00955, HCO3_cotransp, HCO3- transporter family. Th...  117     4e-29


>CDD:460009 pfam00955, HCO3_cotransp, HCO3- transporter family.  This family 
contains Band 3 anion exchange proteins that exchange CL-/HCO3-. 
This family also includes cotransporters of Na+/HCO3-.
Length=497

 Score = 117 bits (296),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 83/357 (23%), Positives = 141/357 (39%), Gaps = 71/357 (20%)

Query  3    WIGIWSLIMHWILAITNACNGLTYVTRFSCDIFGFYVAFIY-------------------  43
            WIG+W      +L   +A   + Y+TRF+ +IF   ++ I+                   
Sbjct  116  WIGLWLAFFLLLLVAFDASFLVRYITRFTEEIFALLISLIFIYEAFKKLIKIFKKYPLYL  175

Query  44   ---------LQKGIQVLTRQWVQVGEASAYLSIM-----------------------VAL  71
                             T        +  + S++                        AL
Sbjct  176  NYDCTCVPPSSNNTTNSTLSLSTESSSINWSSLLTNSECTESYGGTLVGSGCGYVPDTAL  235

Query  72   L--VLMSG--WVC---GQLGSSTLFQRYVRKFLEDYGTPLTIIFFTGFVHIGHMRDVEVA  124
            L  +L  G  W+     Q  +S  F   VR+ + D+  P+ I+       + +   V   
Sbjct  236  LSLILFLGTFWLAYFLKQFKNSPFFPTKVRRLISDFAVPIAILIMVL---VDYFLGVYTP  292

Query  125  TLPTSKAFFPTA-DRDWLVD-FWNISVGDVFLAIPFALLLTILFYFDHNVSSLIAQGTEF  182
             L     F PT  DR W+++ F       +  AI  ALL+TIL + D  ++++I    E 
Sbjct  293  KLQVPSGFKPTRPDRGWIINPFGKNPWWLILAAILPALLVTILIFMDQQITAVIVNRKEN  352

Query  183  PLRKPAGFHWDIWLLGLTTFIAGILGLPFPNGLIPQAPFHTAALCVTRDVADEDDTNKGK  242
             L+K +G+H D++++ +   I  + GLP+      ++  H  +L V  +     +  K K
Sbjct  353  KLKKGSGYHLDLFVVAILNGICSLFGLPWMVAATVRSITHVNSLKVESECVAPGE--KPK  410

Query  243  TIRVTDHVVEQRVSNLAQGLLTLGTMTGPLLIVLHLIPQGVMAGLFFVMGVQALQGN  299
             + V     EQRV+ L   +L   ++   +  VL LIP  V+ G+F  MGV +L G 
Sbjct  411  ILGVR----EQRVTGLLVFILIGLSVF--MTPVLKLIPMPVLYGVFLYMGVTSLSGI  461



Lambda      K        H        a         alpha
   0.325    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581273816


Query= TCONS_00022542

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  176     2e-53
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  125     3e-35


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 176 bits (448),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 70/176 (40%), Positives = 99/176 (56%), Gaps = 11/176 (6%)

Query  120  TAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPMLQKWAEDPFGIFGVVLTPTRELALQ  179
            T IQ   IP IL+GRD +  + TGSGKT+AF +P L+   +   G   +VL PTRELA Q
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQ  60

Query  180  IFEQIKAISAPQSMKPVLITGGTDMRPQAIALAGRPHVVIATPGRLADHIKSSGEDTVCG  239
            I+E++K +     +K   + GG   + Q   L G P +++ TPGRL D ++         
Sbjct  61   IYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKG-PDILVGTPGRLLDLLQERKL-----  114

Query  240  LKRVRMVVLDEADRLLASGPGSMLPDVETCLSALPPSSERQTLLFTATVTPEVRAL  295
            LK ++++VLDEA RLL  G     PD+E  L  LP   +RQ LL +AT+   +  L
Sbjct  115  LKNLKLLVLDEAHRLLDMG---FGPDLEEILRRLPK--KRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 125 bits (317),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 48/109 (44%), Positives = 59/109 (54%), Gaps = 3/109 (3%)

Query  338  AFLHVLLSTEGNASKPAIVFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNANLARF  397
              L  LL  E       ++F    KT +  E +L +   +V  LH  L Q ER   L  F
Sbjct  4    EALLELLKKERG--GKVLIFSQTKKTLEA-ELLLEKEGIKVARLHGDLSQEEREEILEDF  60

Query  398  RASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAG  446
            R     +LVATDVA RGLD+P V LVINYD+P NP  Y+ R+GR  RAG
Sbjct  61   RKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.315    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00027183

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460009 pfam00955, HCO3_cotransp, HCO3- transporter family. Th...  115     2e-28


>CDD:460009 pfam00955, HCO3_cotransp, HCO3- transporter family.  This family 
contains Band 3 anion exchange proteins that exchange CL-/HCO3-. 
This family also includes cotransporters of Na+/HCO3-.
Length=497

 Score = 115 bits (291),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 112/240 (47%), Gaps = 20/240 (8%)

Query  59   VALL--VLMSG--WVC---GQLGSSTLFQRYVRKFLEDYGTPLTIIFFTGFVHIGHMRDV  111
             ALL  +L  G  W+     Q  +S  F   VR+ + D+  P+ I+       + +   V
Sbjct  233  TALLSLILFLGTFWLAYFLKQFKNSPFFPTKVRRLISDFAVPIAILIMVL---VDYFLGV  289

Query  112  EVATLPTSKAFFPTA-DRDWLVD-FWNISVGDVFLAIPFALLLTILFYFDHNVSSLIAQG  169
                L     F PT  DR W+++ F       +  AI  ALL+TIL + D  ++++I   
Sbjct  290  YTPKLQVPSGFKPTRPDRGWIINPFGKNPWWLILAAILPALLVTILIFMDQQITAVIVNR  349

Query  170  TEFPLRKPAGFHWDIWLLGLTTFIAGILGLPFPNGLIPQAPFHTAALCVTRDVADEDDTN  229
             E  L+K +G+H D++++ +   I  + GLP+      ++  H  +L V  +     +  
Sbjct  350  KENKLKKGSGYHLDLFVVAILNGICSLFGLPWMVAATVRSITHVNSLKVESECVAPGE--  407

Query  230  KGKTIRVTDHVVEQRVSNLAQGLLTLGTMTGPLLIVLHLIPQGVMAGLFFVMGVQALQGN  289
            K K + V     EQRV+ L   +L   ++   +  VL LIP  V+ G+F  MGV +L G 
Sbjct  408  KPKILGVR----EQRVTGLLVFILIGLSVF--MTPVLKLIPMPVLYGVFLYMGVTSLSGI  461



Lambda      K        H        a         alpha
   0.325    0.141    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00027184

Length=629
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465097 pfam16335, DUF4965, Domain of unknown function (DUF496...  252     2e-81
CDD:465367 pfam17168, DUF5127, Domain of unknown function (DUF5127)   184     6e-55


>CDD:465097 pfam16335, DUF4965, Domain of unknown function (DUF4965).  This 
family consists of uncharacterized proteins around 840 residues 
in length and is mainly found in various Bacteroides 
species. Several proteins in this family are annotated as Glutaminases, 
but the function of this protein is unknown.
Length=174

 Score = 252 bits (646),  Expect = 2e-81, Method: Composition-based stats.
 Identities = 104/225 (46%), Positives = 124/225 (55%), Gaps = 57/225 (25%)

Query  355  DYMDIVALSARQVMGATTFSGTPD--DPILFLKEISSNGNFQTIDVIFPSFPFFMYTNPR  412
            DY DI+ALS RQ   A   + T +  D + F+KEISSNGN  T+DVI+P+FP F+Y NP 
Sbjct  5    DYADILALSYRQAFAAHELTITDNTGDVLAFMKEISSNGNVNTVDVIYPAFPIFLYLNPE  64

Query  413  WLAYLLEPLIEHMLSGQYPNTYAMHDLGAHFPNATGHPDGRDEYMPVEECGNMLIMGLAM  472
             L  LLEPL+E+  SG+YPN YA HDLG H+PNATGH DG DE MPVEE GNMLIM LA 
Sbjct  65   LLKLLLEPLLEYQESGRYPNPYAPHDLGTHYPNATGHNDGNDEQMPVEESGNMLIMTLAY  124

Query  473  VNSLRYTNDSAASSIWSTLGVPPKVSEPHTGYFPLGELQALSGIDQQDGKWGGGAEGERL  532
                + T D++                                                 
Sbjct  125  A---QATGDTS-------------------------------------------------  132

Query  533  AEKWVQRSYRLWTQWTGYLVEYSLEPANQLSTDDFAGWLALQTNL  577
               ++ + Y L TQW  YLVE  L+PANQLSTDDFAG LA QTNL
Sbjct  133  ---YLSQYYDLLTQWADYLVENGLDPANQLSTDDFAGHLANQTNL  174


>CDD:465367 pfam17168, DUF5127, Domain of unknown function (DUF5127).  
Length=226

 Score = 184 bits (470),  Expect = 6e-55, Method: Composition-based stats.
 Identities = 82/244 (34%), Positives = 116/244 (48%), Gaps = 28/244 (11%)

Query  114  SHSTVS-SAAGPVALTVSFLSPITPTSTLRQSIPASYITVYVHG------DVPVNVYMDL  166
            + +  + +A GPV LTV+FLSP+ P    RQS+P SY+TV V        D  V VY D+
Sbjct  1    TRTIFTFTAGGPVELTVTFLSPVLPDDLDRQSLPFSYLTVEVSSTDGKSHD--VQVYSDI  58

Query  167  NGRWVSGDAGSQIVWQHDTFGSKGKKPTLQKWQFRRQNELLLSEIRDRAEWGTLHFTGPA  226
            +  W SGD    + W                 +   Q++ +LSE  DRA+WG  +   PA
Sbjct  59   SAEWASGDPSQVVTWSTGGTSY---------HKVGTQDQPVLSEKGDRADWGYAYLATPA  109

Query  227  D---VQYHSGDAHTVRNIFATYGAVQNVNDDGFRAIGDREPVFAFSKSFKPGTRANDTQN  283
                + Y SG    VR  FA  G + N  D  FRAI D  PVFAF+         + T  
Sbjct  110  SSSSLTYQSGSDTDVRGQFAKNGKLANTQDTNFRAINDDWPVFAFAHDL---GSVSTTSV  166

Query  284  SVTFSIALIQDPVVQFASARGLTLMRPLWRSWFMDPEELLSFHYNDFTHAATLASDYSDQ  343
            SV F+I   +DP +Q+        +RP WRS +    + LSF  ND++ A   ++    +
Sbjct  167  SVVFAIGYDRDPAIQYFGQN----LRPYWRSKYSSIADALSFFLNDYSAALARSTALDAK  222

Query  344  LAKD  347
            +  D
Sbjct  223  IRAD  226



Lambda      K        H        a         alpha
   0.318    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790487440


Query= TCONS_00027185

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430198 pfam08760, DUF1793, Domain of unknown function (DUF179...  269     6e-86
CDD:465097 pfam16335, DUF4965, Domain of unknown function (DUF496...  253     3e-80
CDD:465367 pfam17168, DUF5127, Domain of unknown function (DUF5127)   184     6e-54


>CDD:430198 pfam08760, DUF1793, Domain of unknown function (DUF1793).  This 
presumed domain is found at the C-terminus of a glutaminase 
protein from fungi. This domain is also found as a single 
domain protein in Bacteroides thetaiotaomicron.
Length=169

 Score = 269 bits (689),  Expect = 6e-86, Method: Composition-based stats.
 Identities = 93/198 (47%), Positives = 115/198 (58%), Gaps = 30/198 (15%)

Query  583  IGINAMSKLAEVAGHDDDAAYFKNISDTYIAKWEQFGMSRDGTHAKLAYDWYGSWTTIYN  642
            IGI AMS++AE+ G  DDAA + +I+  Y  KWE+  +  DG H  LAY   GSW+ +YN
Sbjct  1    IGIAAMSEIAELLGDTDDAANYSSIAKEYAKKWEELAI--DGDHYTLAYGDPGSWSLLYN  58

Query  643  LYADAQLCFHLEGTDSFPASLLKAQTPLGSKKPSKTGFVPHHIYQKQSIWYHYVRQKYGL  702
            LYAD  L                                P  +Y  QS +Y  V+QKYGL
Sbjct  59   LYADKLLG---------------------------LNLFPDSVYDMQSAFYPTVQQKYGL  91

Query  703  PLDSRHLYTKTDWEFFAMAVASER-TRSEILESVAKWVNETVTDRPFTDLHNTEGRGEFP  761
            PLDSRH YTK+DWE +  A AS+  TR   ++ +AKW NET T  PFTDL++TEG G +P
Sbjct  92   PLDSRHTYTKSDWEMWTAATASDTSTRDMFIDPLAKWANETPTRVPFTDLYDTEGTGGYP  151

Query  762  GPNFFARPVVGGHFAFLA  779
            G  F ARPVVGGHFA LA
Sbjct  152  GGGFRARPVVGGHFALLA  169


>CDD:465097 pfam16335, DUF4965, Domain of unknown function (DUF4965).  This 
family consists of uncharacterized proteins around 840 residues 
in length and is mainly found in various Bacteroides 
species. Several proteins in this family are annotated as Glutaminases, 
but the function of this protein is unknown.
Length=174

 Score = 253 bits (649),  Expect = 3e-80, Method: Composition-based stats.
 Identities = 104/225 (46%), Positives = 124/225 (55%), Gaps = 57/225 (25%)

Query  355  DYMDIVALSARQVMGATTFSGTPD--DPILFLKEISSNGNFQTIDVIFPSFPFFMYTNPR  412
            DY DI+ALS RQ   A   + T +  D + F+KEISSNGN  T+DVI+P+FP F+Y NP 
Sbjct  5    DYADILALSYRQAFAAHELTITDNTGDVLAFMKEISSNGNVNTVDVIYPAFPIFLYLNPE  64

Query  413  WLAYLLEPLIEHMLSGQYPNTYAMHDLGAHFPNATGHPDGRDEYMPVEECGNMLIMGLAM  472
             L  LLEPL+E+  SG+YPN YA HDLG H+PNATGH DG DE MPVEE GNMLIM LA 
Sbjct  65   LLKLLLEPLLEYQESGRYPNPYAPHDLGTHYPNATGHNDGNDEQMPVEESGNMLIMTLAY  124

Query  473  VNSLRYTNDSAASSIWSTLGVPPKVSEPHTGYFPLGELQALSGIDQQDGKWGGGAEGERL  532
                + T D++                                                 
Sbjct  125  A---QATGDTS-------------------------------------------------  132

Query  533  AEKWVQRSYRLWTQWTGYLVEYSLEPANQLSTDDFAGWLALQTNL  577
               ++ + Y L TQW  YLVE  L+PANQLSTDDFAG LA QTNL
Sbjct  133  ---YLSQYYDLLTQWADYLVENGLDPANQLSTDDFAGHLANQTNL  174


>CDD:465367 pfam17168, DUF5127, Domain of unknown function (DUF5127).  
Length=226

 Score = 184 bits (470),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 82/244 (34%), Positives = 116/244 (48%), Gaps = 28/244 (11%)

Query  114  SHSTVS-SAAGPVALTVSFLSPITPTSTLRQSIPASYITVYVHG------DVPVNVYMDL  166
            + +  + +A GPV LTV+FLSP+ P    RQS+P SY+TV V        D  V VY D+
Sbjct  1    TRTIFTFTAGGPVELTVTFLSPVLPDDLDRQSLPFSYLTVEVSSTDGKSHD--VQVYSDI  58

Query  167  NGRWVSGDAGSQIVWQHDTFGSKGKKPTLQKWQFRRQNELLLSEIRDRAEWGTLHFTGPA  226
            +  W SGD    + W                 +   Q++ +LSE  DRA+WG  +   PA
Sbjct  59   SAEWASGDPSQVVTWSTGGTSY---------HKVGTQDQPVLSEKGDRADWGYAYLATPA  109

Query  227  D---VQYHSGDAHTVRNIFATYGAVQNVNDDGFRAIGDREPVFAFSKSFKPGTRANDTQN  283
                + Y SG    VR  FA  G + N  D  FRAI D  PVFAF+         + T  
Sbjct  110  SSSSLTYQSGSDTDVRGQFAKNGKLANTQDTNFRAINDDWPVFAFAHDL---GSVSTTSV  166

Query  284  SVTFSIALIQDPVVQFASARGLTLMRPLWRSWFMDPEELLSFHYNDFTHAATLASDYSDQ  343
            SV F+I   +DP +Q+        +RP WRS +    + LSF  ND++ A   ++    +
Sbjct  167  SVVFAIGYDRDPAIQYFGQN----LRPYWRSKYSSIADALSFFLNDYSAALARSTALDAK  222

Query  344  LAKD  347
            +  D
Sbjct  223  IRAD  226



Lambda      K        H        a         alpha
   0.318    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1060844846


Query= TCONS_00022544

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430198 pfam08760, DUF1793, Domain of unknown function (DUF179...  266     4e-88
CDD:465097 pfam16335, DUF4965, Domain of unknown function (DUF496...  251     3e-82


>CDD:430198 pfam08760, DUF1793, Domain of unknown function (DUF1793).  This 
presumed domain is found at the C-terminus of a glutaminase 
protein from fungi. This domain is also found as a single 
domain protein in Bacteroides thetaiotaomicron.
Length=169

 Score = 266 bits (683),  Expect = 4e-88, Method: Composition-based stats.
 Identities = 93/198 (47%), Positives = 115/198 (58%), Gaps = 30/198 (15%)

Query  276  IGINAMSKLAEVAGHDDDAAYFKNISDTYIAKWEQFGMSRDGTHAKLAYDWYGSWTTIYN  335
            IGI AMS++AE+ G  DDAA + +I+  Y  KWE+  +  DG H  LAY   GSW+ +YN
Sbjct  1    IGIAAMSEIAELLGDTDDAANYSSIAKEYAKKWEELAI--DGDHYTLAYGDPGSWSLLYN  58

Query  336  LYADAQLCFHLEGTDSFPASLLKAQTPLGSKKPSKTGFVPHHIYQKQSIWYHYVRQKYGL  395
            LYAD  L                                P  +Y  QS +Y  V+QKYGL
Sbjct  59   LYADKLLG---------------------------LNLFPDSVYDMQSAFYPTVQQKYGL  91

Query  396  PLDSRHLYTKTDWEFFAMAVASER-TRSEILESVAKWVNETVTDRPFTDLHNTEGRGEFP  454
            PLDSRH YTK+DWE +  A AS+  TR   ++ +AKW NET T  PFTDL++TEG G +P
Sbjct  92   PLDSRHTYTKSDWEMWTAATASDTSTRDMFIDPLAKWANETPTRVPFTDLYDTEGTGGYP  151

Query  455  GPNFFARPVVGGHFAFLA  472
            G  F ARPVVGGHFA LA
Sbjct  152  GGGFRARPVVGGHFALLA  169


>CDD:465097 pfam16335, DUF4965, Domain of unknown function (DUF4965).  This 
family consists of uncharacterized proteins around 840 residues 
in length and is mainly found in various Bacteroides 
species. Several proteins in this family are annotated as Glutaminases, 
but the function of this protein is unknown.
Length=174

 Score = 251 bits (644),  Expect = 3e-82, Method: Composition-based stats.
 Identities = 104/225 (46%), Positives = 124/225 (55%), Gaps = 57/225 (25%)

Query  48   DYMDIVALSARQVMGATTFSGTPD--DPILFLKEISSNGNFQTIDVIFPSFPFFMYTNPR  105
            DY DI+ALS RQ   A   + T +  D + F+KEISSNGN  T+DVI+P+FP F+Y NP 
Sbjct  5    DYADILALSYRQAFAAHELTITDNTGDVLAFMKEISSNGNVNTVDVIYPAFPIFLYLNPE  64

Query  106  WLAYLLEPLIEHMLSGQYPNTYAMHDLGAHFPNATGHPDGRDEYMPVEECGNMLIMGLAM  165
             L  LLEPL+E+  SG+YPN YA HDLG H+PNATGH DG DE MPVEE GNMLIM LA 
Sbjct  65   LLKLLLEPLLEYQESGRYPNPYAPHDLGTHYPNATGHNDGNDEQMPVEESGNMLIMTLAY  124

Query  166  VNSLRYTNDSAASSIWSTLGVPPKVSEPHTGYFPLGELQALSGIDQQDGKWGGGAEGERL  225
                + T D++                                                 
Sbjct  125  A---QATGDTS-------------------------------------------------  132

Query  226  AEKWVQRSYRLWTQWTGYLVEYSLEPANQLSTDDFAGWLALQTNL  270
               ++ + Y L TQW  YLVE  L+PANQLSTDDFAG LA QTNL
Sbjct  133  ---YLSQYYDLLTQWADYLVENGLDPANQLSTDDFAGHLANQTNL  174



Lambda      K        H        a         alpha
   0.319    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00022545

Length=649
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465097 pfam16335, DUF4965, Domain of unknown function (DUF496...  260     3e-84
CDD:465367 pfam17168, DUF5127, Domain of unknown function (DUF5127)   142     3e-39


>CDD:465097 pfam16335, DUF4965, Domain of unknown function (DUF4965).  This 
family consists of uncharacterized proteins around 840 residues 
in length and is mainly found in various Bacteroides 
species. Several proteins in this family are annotated as Glutaminases, 
but the function of this protein is unknown.
Length=174

 Score = 260 bits (666),  Expect = 3e-84, Method: Composition-based stats.
 Identities = 104/225 (46%), Positives = 124/225 (55%), Gaps = 57/225 (25%)

Query  192  DYMDIVALSARQVMGATTFSGTPD--DPILFLKEISSNGNFQTIDVIFPSFPFFMYTNPR  249
            DY DI+ALS RQ   A   + T +  D + F+KEISSNGN  T+DVI+P+FP F+Y NP 
Sbjct  5    DYADILALSYRQAFAAHELTITDNTGDVLAFMKEISSNGNVNTVDVIYPAFPIFLYLNPE  64

Query  250  WLAYLLEPLIEHMLSGQYPNTYAMHDLGAHFPNATGHPDGRDEYMPVEECGNMLIMGLAM  309
             L  LLEPL+E+  SG+YPN YA HDLG H+PNATGH DG DE MPVEE GNMLIM LA 
Sbjct  65   LLKLLLEPLLEYQESGRYPNPYAPHDLGTHYPNATGHNDGNDEQMPVEESGNMLIMTLAY  124

Query  310  VNSLRYTNDSAASSIWSTLGVPPKVSEPHTGYFPLGELQALSGIDQQDGKWGGGAEGERL  369
                + T D++                                                 
Sbjct  125  A---QATGDTS-------------------------------------------------  132

Query  370  AEKWVQRSYRLWTQWTGYLVEYSLEPANQLSTDDFAGWLALQTNL  414
               ++ + Y L TQW  YLVE  L+PANQLSTDDFAG LA QTNL
Sbjct  133  ---YLSQYYDLLTQWADYLVENGLDPANQLSTDDFAGHLANQTNL  174


>CDD:465367 pfam17168, DUF5127, Domain of unknown function (DUF5127).  
Length=226

 Score = 142 bits (360),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 85/187 (45%), Gaps = 19/187 (10%)

Query  1    MDLNGRWVSGDAGSQIVWQHDTFGSKGKKPTLQKWQFRRQNELLLSEIRDRAEWGTLHFT  60
             D++  W SGD    + W                 +   Q++ +LSE  DRA+WG  +  
Sbjct  56   SDISAEWASGDPSQVVTWSTGGTSY---------HKVGTQDQPVLSEKGDRADWGYAYLA  106

Query  61   GPAD---VQYHSGDAHTVRNIFATYGAVQNVNDDGFRAIGDREPVFAFSKSFKPGTRAND  117
             PA    + Y SG    VR  FA  G + N  D  FRAI D  PVFAF+     G+ +  
Sbjct  107  TPASSSSLTYQSGSDTDVRGQFAKNGKLANTQDTNFRAINDDWPVFAFAHDL--GSVSTT  164

Query  118  TQNSVTFSIALIQDPVVQFASARGLTLMRPLWRSWFMDPEELLSFHYNDFTHAATLASDY  177
            +  SV F+I   +DP +Q+        +RP WRS +    + LSF  ND++ A   ++  
Sbjct  165  SV-SVVFAIGYDRDPAIQYFGQN----LRPYWRSKYSSIADALSFFLNDYSAALARSTAL  219

Query  178  SDQLAKD  184
              ++  D
Sbjct  220  DAKIRAD  226



Lambda      K        H        a         alpha
   0.320    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 819983240


Query= TCONS_00022546

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430198 pfam08760, DUF1793, Domain of unknown function (DUF179...  269     6e-86
CDD:465097 pfam16335, DUF4965, Domain of unknown function (DUF496...  253     3e-80
CDD:465367 pfam17168, DUF5127, Domain of unknown function (DUF5127)   184     6e-54


>CDD:430198 pfam08760, DUF1793, Domain of unknown function (DUF1793).  This 
presumed domain is found at the C-terminus of a glutaminase 
protein from fungi. This domain is also found as a single 
domain protein in Bacteroides thetaiotaomicron.
Length=169

 Score = 269 bits (689),  Expect = 6e-86, Method: Composition-based stats.
 Identities = 93/198 (47%), Positives = 115/198 (58%), Gaps = 30/198 (15%)

Query  583  IGINAMSKLAEVAGHDDDAAYFKNISDTYIAKWEQFGMSRDGTHAKLAYDWYGSWTTIYN  642
            IGI AMS++AE+ G  DDAA + +I+  Y  KWE+  +  DG H  LAY   GSW+ +YN
Sbjct  1    IGIAAMSEIAELLGDTDDAANYSSIAKEYAKKWEELAI--DGDHYTLAYGDPGSWSLLYN  58

Query  643  LYADAQLCFHLEGTDSFPASLLKAQTPLGSKKPSKTGFVPHHIYQKQSIWYHYVRQKYGL  702
            LYAD  L                                P  +Y  QS +Y  V+QKYGL
Sbjct  59   LYADKLLG---------------------------LNLFPDSVYDMQSAFYPTVQQKYGL  91

Query  703  PLDSRHLYTKTDWEFFAMAVASER-TRSEILESVAKWVNETVTDRPFTDLHNTEGRGEFP  761
            PLDSRH YTK+DWE +  A AS+  TR   ++ +AKW NET T  PFTDL++TEG G +P
Sbjct  92   PLDSRHTYTKSDWEMWTAATASDTSTRDMFIDPLAKWANETPTRVPFTDLYDTEGTGGYP  151

Query  762  GPNFFARPVVGGHFAFLA  779
            G  F ARPVVGGHFA LA
Sbjct  152  GGGFRARPVVGGHFALLA  169


>CDD:465097 pfam16335, DUF4965, Domain of unknown function (DUF4965).  This 
family consists of uncharacterized proteins around 840 residues 
in length and is mainly found in various Bacteroides 
species. Several proteins in this family are annotated as Glutaminases, 
but the function of this protein is unknown.
Length=174

 Score = 253 bits (649),  Expect = 3e-80, Method: Composition-based stats.
 Identities = 104/225 (46%), Positives = 124/225 (55%), Gaps = 57/225 (25%)

Query  355  DYMDIVALSARQVMGATTFSGTPD--DPILFLKEISSNGNFQTIDVIFPSFPFFMYTNPR  412
            DY DI+ALS RQ   A   + T +  D + F+KEISSNGN  T+DVI+P+FP F+Y NP 
Sbjct  5    DYADILALSYRQAFAAHELTITDNTGDVLAFMKEISSNGNVNTVDVIYPAFPIFLYLNPE  64

Query  413  WLAYLLEPLIEHMLSGQYPNTYAMHDLGAHFPNATGHPDGRDEYMPVEECGNMLIMGLAM  472
             L  LLEPL+E+  SG+YPN YA HDLG H+PNATGH DG DE MPVEE GNMLIM LA 
Sbjct  65   LLKLLLEPLLEYQESGRYPNPYAPHDLGTHYPNATGHNDGNDEQMPVEESGNMLIMTLAY  124

Query  473  VNSLRYTNDSAASSIWSTLGVPPKVSEPHTGYFPLGELQALSGIDQQDGKWGGGAEGERL  532
                + T D++                                                 
Sbjct  125  A---QATGDTS-------------------------------------------------  132

Query  533  AEKWVQRSYRLWTQWTGYLVEYSLEPANQLSTDDFAGWLALQTNL  577
               ++ + Y L TQW  YLVE  L+PANQLSTDDFAG LA QTNL
Sbjct  133  ---YLSQYYDLLTQWADYLVENGLDPANQLSTDDFAGHLANQTNL  174


>CDD:465367 pfam17168, DUF5127, Domain of unknown function (DUF5127).  
Length=226

 Score = 184 bits (470),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 82/244 (34%), Positives = 116/244 (48%), Gaps = 28/244 (11%)

Query  114  SHSTVS-SAAGPVALTVSFLSPITPTSTLRQSIPASYITVYVHG------DVPVNVYMDL  166
            + +  + +A GPV LTV+FLSP+ P    RQS+P SY+TV V        D  V VY D+
Sbjct  1    TRTIFTFTAGGPVELTVTFLSPVLPDDLDRQSLPFSYLTVEVSSTDGKSHD--VQVYSDI  58

Query  167  NGRWVSGDAGSQIVWQHDTFGSKGKKPTLQKWQFRRQNELLLSEIRDRAEWGTLHFTGPA  226
            +  W SGD    + W                 +   Q++ +LSE  DRA+WG  +   PA
Sbjct  59   SAEWASGDPSQVVTWSTGGTSY---------HKVGTQDQPVLSEKGDRADWGYAYLATPA  109

Query  227  D---VQYHSGDAHTVRNIFATYGAVQNVNDDGFRAIGDREPVFAFSKSFKPGTRANDTQN  283
                + Y SG    VR  FA  G + N  D  FRAI D  PVFAF+         + T  
Sbjct  110  SSSSLTYQSGSDTDVRGQFAKNGKLANTQDTNFRAINDDWPVFAFAHDL---GSVSTTSV  166

Query  284  SVTFSIALIQDPVVQFASARGLTLMRPLWRSWFMDPEELLSFHYNDFTHAATLASDYSDQ  343
            SV F+I   +DP +Q+        +RP WRS +    + LSF  ND++ A   ++    +
Sbjct  167  SVVFAIGYDRDPAIQYFGQN----LRPYWRSKYSSIADALSFFLNDYSAALARSTALDAK  222

Query  344  LAKD  347
            +  D
Sbjct  223  IRAD  226



Lambda      K        H        a         alpha
   0.318    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0728    0.140     1.90     42.6     43.6 

Effective search space used: 1060844846


Query= TCONS_00027187

Length=671
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430198 pfam08760, DUF1793, Domain of unknown function (DUF179...  268     3e-87
CDD:465097 pfam16335, DUF4965, Domain of unknown function (DUF496...  254     7e-82
CDD:465367 pfam17168, DUF5127, Domain of unknown function (DUF5127)   136     5e-37


>CDD:430198 pfam08760, DUF1793, Domain of unknown function (DUF1793).  This 
presumed domain is found at the C-terminus of a glutaminase 
protein from fungi. This domain is also found as a single 
domain protein in Bacteroides thetaiotaomicron.
Length=169

 Score = 268 bits (688),  Expect = 3e-87, Method: Composition-based stats.
 Identities = 93/198 (47%), Positives = 115/198 (58%), Gaps = 30/198 (15%)

Query  420  IGINAMSKLAEVAGHDDDAAYFKNISDTYIAKWEQFGMSRDGTHAKLAYDWYGSWTTIYN  479
            IGI AMS++AE+ G  DDAA + +I+  Y  KWE+  +  DG H  LAY   GSW+ +YN
Sbjct  1    IGIAAMSEIAELLGDTDDAANYSSIAKEYAKKWEELAI--DGDHYTLAYGDPGSWSLLYN  58

Query  480  LYADAQLCFHLEGTDSFPASLLKAQTPLGSKKPSKTGFVPHHIYQKQSIWYHYVRQKYGL  539
            LYAD  L                                P  +Y  QS +Y  V+QKYGL
Sbjct  59   LYADKLLG---------------------------LNLFPDSVYDMQSAFYPTVQQKYGL  91

Query  540  PLDSRHLYTKTDWEFFAMAVASER-TRSEILESVAKWVNETVTDRPFTDLHNTEGRGEFP  598
            PLDSRH YTK+DWE +  A AS+  TR   ++ +AKW NET T  PFTDL++TEG G +P
Sbjct  92   PLDSRHTYTKSDWEMWTAATASDTSTRDMFIDPLAKWANETPTRVPFTDLYDTEGTGGYP  151

Query  599  GPNFFARPVVGGHFAFLA  616
            G  F ARPVVGGHFA LA
Sbjct  152  GGGFRARPVVGGHFALLA  169


>CDD:465097 pfam16335, DUF4965, Domain of unknown function (DUF4965).  This 
family consists of uncharacterized proteins around 840 residues 
in length and is mainly found in various Bacteroides 
species. Several proteins in this family are annotated as Glutaminases, 
but the function of this protein is unknown.
Length=174

 Score = 254 bits (652),  Expect = 7e-82, Method: Composition-based stats.
 Identities = 104/225 (46%), Positives = 124/225 (55%), Gaps = 57/225 (25%)

Query  192  DYMDIVALSARQVMGATTFSGTPD--DPILFLKEISSNGNFQTIDVIFPSFPFFMYTNPR  249
            DY DI+ALS RQ   A   + T +  D + F+KEISSNGN  T+DVI+P+FP F+Y NP 
Sbjct  5    DYADILALSYRQAFAAHELTITDNTGDVLAFMKEISSNGNVNTVDVIYPAFPIFLYLNPE  64

Query  250  WLAYLLEPLIEHMLSGQYPNTYAMHDLGAHFPNATGHPDGRDEYMPVEECGNMLIMGLAM  309
             L  LLEPL+E+  SG+YPN YA HDLG H+PNATGH DG DE MPVEE GNMLIM LA 
Sbjct  65   LLKLLLEPLLEYQESGRYPNPYAPHDLGTHYPNATGHNDGNDEQMPVEESGNMLIMTLAY  124

Query  310  VNSLRYTNDSAASSIWSTLGVPPKVSEPHTGYFPLGELQALSGIDQQDGKWGGGAEGERL  369
                + T D++                                                 
Sbjct  125  A---QATGDTS-------------------------------------------------  132

Query  370  AEKWVQRSYRLWTQWTGYLVEYSLEPANQLSTDDFAGWLALQTNL  414
               ++ + Y L TQW  YLVE  L+PANQLSTDDFAG LA QTNL
Sbjct  133  ---YLSQYYDLLTQWADYLVENGLDPANQLSTDDFAGHLANQTNL  174


>CDD:465367 pfam17168, DUF5127, Domain of unknown function (DUF5127).  
Length=226

 Score = 136 bits (344),  Expect = 5e-37, Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 85/187 (45%), Gaps = 19/187 (10%)

Query  1    MDLNGRWVSGDAGSQIVWQHDTFGSKGKKPTLQKWQFRRQNELLLSEIRDRAEWGTLHFT  60
             D++  W SGD    + W                 +   Q++ +LSE  DRA+WG  +  
Sbjct  56   SDISAEWASGDPSQVVTWSTGGTSY---------HKVGTQDQPVLSEKGDRADWGYAYLA  106

Query  61   GPAD---VQYHSGDAHTVRNIFATYGAVQNVNDDGFRAIGDREPVFAFSKSFKPGTRAND  117
             PA    + Y SG    VR  FA  G + N  D  FRAI D  PVFAF+     G+ +  
Sbjct  107  TPASSSSLTYQSGSDTDVRGQFAKNGKLANTQDTNFRAINDDWPVFAFAHDL--GSVSTT  164

Query  118  TQNSVTFSIALIQDPVVQFASARGLTLMRPLWRSWFMDPEELLSFHYNDFTHAATLASDY  177
            +  SV F+I   +DP +Q+        +RP WRS +    + LSF  ND++ A   ++  
Sbjct  165  SV-SVVFAIGYDRDPAIQYFGQN----LRPYWRSKYSSIADALSFFLNDYSAALARSTAL  219

Query  178  SDQLAKD  184
              ++  D
Sbjct  220  DAKIRAD  226



Lambda      K        H        a         alpha
   0.319    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 852428620


Query= TCONS_00022547

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.141    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00022548

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00022549

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461367 pfam04614, Pex19, Pex19 protein family                     242     1e-79


>CDD:461367 pfam04614, Pex19, Pex19 protein family.  
Length=245

 Score = 242 bits (621),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 109/281 (39%), Positives = 154/281 (55%), Gaps = 39/281 (14%)

Query  112  FDEDAFMRQLEQDMAKMMNHAAQESGAPDHKEFENAINQGADAFTKQLEESGIPPGDFLK  171
             +++ F +QL+++M  +M     ++G            +  D   KQ EE+         
Sbjct  1    LEDEEFAKQLQKEMENLMKELGPDAGE------NAEAAEDFDELLKQFEEAAEAAA----  50

Query  172  QLLADVMAEEGESAGAAAGAGARVGPSAGGSSGSATGAEKATAPESFNDAIQRTINRMKE  231
                                      +AG +  SA+ A  A  PESF D I  T++R+KE
Sbjct  51   --------------------------AAGSAEASASAAGSAAGPESFQDIISETLDRLKE  84

Query  232  SGDKATAAATEDGGISEDMLMQLLKGLEAG-VGNGGDDLDLTQMIAGVMEQFSNKEMLYE  290
            SGDKA AA     G S+D+L QLLK L  G  G  G   D+++M+ G+MEQ S+KE+LYE
Sbjct  85   SGDKADAAIESASGNSDDLLAQLLKQLGLGGGGGDGGGEDMSKMLLGMMEQLSSKEVLYE  144

Query  291  PMKELDAKWGPWLKENKGKVPAEDMKRYEKQAKLVTEIVAKFEEEEYTDEDPKYRQAVWE  350
            PMKEL+ K+  WL+ENK K+ AED +RYEKQ ++V EIVA FE+E+Y+DEDP+ R+ + +
Sbjct  145  PMKELNDKFPEWLEENKEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDREEITD  204

Query  351  KMQEMQALGSPPEELVANPWP--EDMAGDGSGASLPDCPQQ  389
             MQE+Q LGSPP+ELV +  P    + G         C QQ
Sbjct  205  LMQELQDLGSPPKELVGDMPPGLPGLPGLPGANGGEGCKQQ  245



Lambda      K        H        a         alpha
   0.304    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00022550

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461367 pfam04614, Pex19, Pex19 protein family                     242     1e-79


>CDD:461367 pfam04614, Pex19, Pex19 protein family.  
Length=245

 Score = 242 bits (621),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 109/281 (39%), Positives = 154/281 (55%), Gaps = 39/281 (14%)

Query  112  FDEDAFMRQLEQDMAKMMNHAAQESGAPDHKEFENAINQGADAFTKQLEESGIPPGDFLK  171
             +++ F +QL+++M  +M     ++G            +  D   KQ EE+         
Sbjct  1    LEDEEFAKQLQKEMENLMKELGPDAGE------NAEAAEDFDELLKQFEEAAEAAA----  50

Query  172  QLLADVMAEEGESAGAAAGAGARVGPSAGGSSGSATGAEKATAPESFNDAIQRTINRMKE  231
                                      +AG +  SA+ A  A  PESF D I  T++R+KE
Sbjct  51   --------------------------AAGSAEASASAAGSAAGPESFQDIISETLDRLKE  84

Query  232  SGDKATAAATEDGGISEDMLMQLLKGLEAG-VGNGGDDLDLTQMIAGVMEQFSNKEMLYE  290
            SGDKA AA     G S+D+L QLLK L  G  G  G   D+++M+ G+MEQ S+KE+LYE
Sbjct  85   SGDKADAAIESASGNSDDLLAQLLKQLGLGGGGGDGGGEDMSKMLLGMMEQLSSKEVLYE  144

Query  291  PMKELDAKWGPWLKENKGKVPAEDMKRYEKQAKLVTEIVAKFEEEEYTDEDPKYRQAVWE  350
            PMKEL+ K+  WL+ENK K+ AED +RYEKQ ++V EIVA FE+E+Y+DEDP+ R+ + +
Sbjct  145  PMKELNDKFPEWLEENKEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDREEITD  204

Query  351  KMQEMQALGSPPEELVANPWP--EDMAGDGSGASLPDCPQQ  389
             MQE+Q LGSPP+ELV +  P    + G         C QQ
Sbjct  205  LMQELQDLGSPPKELVGDMPPGLPGLPGLPGANGGEGCKQQ  245



Lambda      K        H        a         alpha
   0.304    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00022554

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461367 pfam04614, Pex19, Pex19 protein family                     234     1e-76


>CDD:461367 pfam04614, Pex19, Pex19 protein family.  
Length=245

 Score = 234 bits (600),  Expect = 1e-76, Method: Composition-based stats.
 Identities = 104/258 (40%), Positives = 148/258 (57%), Gaps = 37/258 (14%)

Query  112  FDEDAFMRQLEQDMAKMMNHAAQESGAPDHKEFENAINQGADAFTKQLEESGIPPGDFLK  171
             +++ F +QL+++M  +M     ++G            +  D   KQ EE+         
Sbjct  1    LEDEEFAKQLQKEMENLMKELGPDAGE------NAEAAEDFDELLKQFEEAAEAAA----  50

Query  172  QLLADVMAEEGESAGAAAGAGARVGPSAGGSSGSATGAEKATAPESFNDAIQRTINRMKE  231
                                      +AG +  SA+ A  A  PESF D I  T++R+KE
Sbjct  51   --------------------------AAGSAEASASAAGSAAGPESFQDIISETLDRLKE  84

Query  232  SGDKATAAATEDGGISEDMLMQLLKGLEAG-VGNGGDDLDLTQMIAGVMEQFSNKEMLYE  290
            SGDKA AA     G S+D+L QLLK L  G  G  G   D+++M+ G+MEQ S+KE+LYE
Sbjct  85   SGDKADAAIESASGNSDDLLAQLLKQLGLGGGGGDGGGEDMSKMLLGMMEQLSSKEVLYE  144

Query  291  PMKELDAKWGPWLKENKGKVPAEDMKRYEKQAKLVTEIVAKFEEEEYTDEDPKYRQAVWE  350
            PMKEL+ K+  WL+ENK K+ AED +RYEKQ ++V EIVA FE+E+Y+DEDP+ R+ + +
Sbjct  145  PMKELNDKFPEWLEENKEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDREEITD  204

Query  351  KMQEMQALGSPPEELVAN  368
             MQE+Q LGSPP+ELV +
Sbjct  205  LMQELQDLGSPPKELVGD  222



Lambda      K        H        a         alpha
   0.304    0.122    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00027188

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461367 pfam04614, Pex19, Pex19 protein family                     242     1e-79


>CDD:461367 pfam04614, Pex19, Pex19 protein family.  
Length=245

 Score = 242 bits (621),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 109/281 (39%), Positives = 154/281 (55%), Gaps = 39/281 (14%)

Query  112  FDEDAFMRQLEQDMAKMMNHAAQESGAPDHKEFENAINQGADAFTKQLEESGIPPGDFLK  171
             +++ F +QL+++M  +M     ++G            +  D   KQ EE+         
Sbjct  1    LEDEEFAKQLQKEMENLMKELGPDAGE------NAEAAEDFDELLKQFEEAAEAAA----  50

Query  172  QLLADVMAEEGESAGAAAGAGARVGPSAGGSSGSATGAEKATAPESFNDAIQRTINRMKE  231
                                      +AG +  SA+ A  A  PESF D I  T++R+KE
Sbjct  51   --------------------------AAGSAEASASAAGSAAGPESFQDIISETLDRLKE  84

Query  232  SGDKATAAATEDGGISEDMLMQLLKGLEAG-VGNGGDDLDLTQMIAGVMEQFSNKEMLYE  290
            SGDKA AA     G S+D+L QLLK L  G  G  G   D+++M+ G+MEQ S+KE+LYE
Sbjct  85   SGDKADAAIESASGNSDDLLAQLLKQLGLGGGGGDGGGEDMSKMLLGMMEQLSSKEVLYE  144

Query  291  PMKELDAKWGPWLKENKGKVPAEDMKRYEKQAKLVTEIVAKFEEEEYTDEDPKYRQAVWE  350
            PMKEL+ K+  WL+ENK K+ AED +RYEKQ ++V EIVA FE+E+Y+DEDP+ R+ + +
Sbjct  145  PMKELNDKFPEWLEENKEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDREEITD  204

Query  351  KMQEMQALGSPPEELVANPWP--EDMAGDGSGASLPDCPQQ  389
             MQE+Q LGSPP+ELV +  P    + G         C QQ
Sbjct  205  LMQELQDLGSPPKELVGDMPPGLPGLPGLPGANGGEGCKQQ  245



Lambda      K        H        a         alpha
   0.304    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00027189

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461367 pfam04614, Pex19, Pex19 protein family                     229     6e-76


>CDD:461367 pfam04614, Pex19, Pex19 protein family.  
Length=245

 Score = 229 bits (586),  Expect = 6e-76, Method: Composition-based stats.
 Identities = 108/275 (39%), Positives = 150/275 (55%), Gaps = 39/275 (14%)

Query  1    MRQLEQDMAKMMNHAAQESGAPDHKEFENAINQGADAFTKQLEESGIPPGDFLKQLLADV  60
             +QL+++M  +M     ++G            +  D   KQ EE+               
Sbjct  7    AKQLQKEMENLMKELGPDAGE------NAEAAEDFDELLKQFEEAAEAAA----------  50

Query  61   MAEEGESAGAAAGAGARVGPSAGGSSGSATGAEKATAPESFNDAIQRTINRMKESGDKAT  120
                                +AG +  SA+ A  A  PESF D I  T++R+KESGDKA 
Sbjct  51   --------------------AAGSAEASASAAGSAAGPESFQDIISETLDRLKESGDKAD  90

Query  121  AAATEDGGISEDMLMQLLKGLEAG-VGNGGDDLDLTQMIAGVMEQFSNKEMLYEPMKELD  179
            AA     G S+D+L QLLK L  G  G  G   D+++M+ G+MEQ S+KE+LYEPMKEL+
Sbjct  91   AAIESASGNSDDLLAQLLKQLGLGGGGGDGGGEDMSKMLLGMMEQLSSKEVLYEPMKELN  150

Query  180  AKWGPWLKENKGKVPAEDMKRYEKQAKLVTEIVAKFEEEEYTDEDPKYRQAVWEKMQEMQ  239
             K+  WL+ENK K+ AED +RYEKQ ++V EIVA FE+E+Y+DEDP+ R+ + + MQE+Q
Sbjct  151  DKFPEWLEENKEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDREEITDLMQELQ  210

Query  240  ALGSPPEELVANPWP--EDMAGDGSGASLPDCPQQ  272
             LGSPP+ELV +  P    + G         C QQ
Sbjct  211  DLGSPPKELVGDMPPGLPGLPGLPGANGGEGCKQQ  245



Lambda      K        H        a         alpha
   0.307    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00022551

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461367 pfam04614, Pex19, Pex19 protein family                     229     6e-76


>CDD:461367 pfam04614, Pex19, Pex19 protein family.  
Length=245

 Score = 229 bits (586),  Expect = 6e-76, Method: Composition-based stats.
 Identities = 108/275 (39%), Positives = 150/275 (55%), Gaps = 39/275 (14%)

Query  1    MRQLEQDMAKMMNHAAQESGAPDHKEFENAINQGADAFTKQLEESGIPPGDFLKQLLADV  60
             +QL+++M  +M     ++G            +  D   KQ EE+               
Sbjct  7    AKQLQKEMENLMKELGPDAGE------NAEAAEDFDELLKQFEEAAEAAA----------  50

Query  61   MAEEGESAGAAAGAGARVGPSAGGSSGSATGAEKATAPESFNDAIQRTINRMKESGDKAT  120
                                +AG +  SA+ A  A  PESF D I  T++R+KESGDKA 
Sbjct  51   --------------------AAGSAEASASAAGSAAGPESFQDIISETLDRLKESGDKAD  90

Query  121  AAATEDGGISEDMLMQLLKGLEAG-VGNGGDDLDLTQMIAGVMEQFSNKEMLYEPMKELD  179
            AA     G S+D+L QLLK L  G  G  G   D+++M+ G+MEQ S+KE+LYEPMKEL+
Sbjct  91   AAIESASGNSDDLLAQLLKQLGLGGGGGDGGGEDMSKMLLGMMEQLSSKEVLYEPMKELN  150

Query  180  AKWGPWLKENKGKVPAEDMKRYEKQAKLVTEIVAKFEEEEYTDEDPKYRQAVWEKMQEMQ  239
             K+  WL+ENK K+ AED +RYEKQ ++V EIVA FE+E+Y+DEDP+ R+ + + MQE+Q
Sbjct  151  DKFPEWLEENKEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDREEITDLMQELQ  210

Query  240  ALGSPPEELVANPWP--EDMAGDGSGASLPDCPQQ  272
             LGSPP+ELV +  P    + G         C QQ
Sbjct  211  DLGSPPKELVGDMPPGLPGLPGLPGANGGEGCKQQ  245



Lambda      K        H        a         alpha
   0.307    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00027190

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461367 pfam04614, Pex19, Pex19 protein family                     242     1e-79


>CDD:461367 pfam04614, Pex19, Pex19 protein family.  
Length=245

 Score = 242 bits (621),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 109/281 (39%), Positives = 154/281 (55%), Gaps = 39/281 (14%)

Query  112  FDEDAFMRQLEQDMAKMMNHAAQESGAPDHKEFENAINQGADAFTKQLEESGIPPGDFLK  171
             +++ F +QL+++M  +M     ++G            +  D   KQ EE+         
Sbjct  1    LEDEEFAKQLQKEMENLMKELGPDAGE------NAEAAEDFDELLKQFEEAAEAAA----  50

Query  172  QLLADVMAEEGESAGAAAGAGARVGPSAGGSSGSATGAEKATAPESFNDAIQRTINRMKE  231
                                      +AG +  SA+ A  A  PESF D I  T++R+KE
Sbjct  51   --------------------------AAGSAEASASAAGSAAGPESFQDIISETLDRLKE  84

Query  232  SGDKATAAATEDGGISEDMLMQLLKGLEAG-VGNGGDDLDLTQMIAGVMEQFSNKEMLYE  290
            SGDKA AA     G S+D+L QLLK L  G  G  G   D+++M+ G+MEQ S+KE+LYE
Sbjct  85   SGDKADAAIESASGNSDDLLAQLLKQLGLGGGGGDGGGEDMSKMLLGMMEQLSSKEVLYE  144

Query  291  PMKELDAKWGPWLKENKGKVPAEDMKRYEKQAKLVTEIVAKFEEEEYTDEDPKYRQAVWE  350
            PMKEL+ K+  WL+ENK K+ AED +RYEKQ ++V EIVA FE+E+Y+DEDP+ R+ + +
Sbjct  145  PMKELNDKFPEWLEENKEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDREEITD  204

Query  351  KMQEMQALGSPPEELVANPWP--EDMAGDGSGASLPDCPQQ  389
             MQE+Q LGSPP+ELV +  P    + G         C QQ
Sbjct  205  LMQELQDLGSPPKELVGDMPPGLPGLPGLPGANGGEGCKQQ  245



Lambda      K        H        a         alpha
   0.304    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00022552

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461367 pfam04614, Pex19, Pex19 protein family                     242     1e-79


>CDD:461367 pfam04614, Pex19, Pex19 protein family.  
Length=245

 Score = 242 bits (621),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 109/281 (39%), Positives = 154/281 (55%), Gaps = 39/281 (14%)

Query  112  FDEDAFMRQLEQDMAKMMNHAAQESGAPDHKEFENAINQGADAFTKQLEESGIPPGDFLK  171
             +++ F +QL+++M  +M     ++G            +  D   KQ EE+         
Sbjct  1    LEDEEFAKQLQKEMENLMKELGPDAGE------NAEAAEDFDELLKQFEEAAEAAA----  50

Query  172  QLLADVMAEEGESAGAAAGAGARVGPSAGGSSGSATGAEKATAPESFNDAIQRTINRMKE  231
                                      +AG +  SA+ A  A  PESF D I  T++R+KE
Sbjct  51   --------------------------AAGSAEASASAAGSAAGPESFQDIISETLDRLKE  84

Query  232  SGDKATAAATEDGGISEDMLMQLLKGLEAG-VGNGGDDLDLTQMIAGVMEQFSNKEMLYE  290
            SGDKA AA     G S+D+L QLLK L  G  G  G   D+++M+ G+MEQ S+KE+LYE
Sbjct  85   SGDKADAAIESASGNSDDLLAQLLKQLGLGGGGGDGGGEDMSKMLLGMMEQLSSKEVLYE  144

Query  291  PMKELDAKWGPWLKENKGKVPAEDMKRYEKQAKLVTEIVAKFEEEEYTDEDPKYRQAVWE  350
            PMKEL+ K+  WL+ENK K+ AED +RYEKQ ++V EIVA FE+E+Y+DEDP+ R+ + +
Sbjct  145  PMKELNDKFPEWLEENKEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDREEITD  204

Query  351  KMQEMQALGSPPEELVANPWP--EDMAGDGSGASLPDCPQQ  389
             MQE+Q LGSPP+ELV +  P    + G         C QQ
Sbjct  205  LMQELQDLGSPPKELVGDMPPGLPGLPGLPGANGGEGCKQQ  245



Lambda      K        H        a         alpha
   0.304    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00027191

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461367 pfam04614, Pex19, Pex19 protein family                     242     1e-79


>CDD:461367 pfam04614, Pex19, Pex19 protein family.  
Length=245

 Score = 242 bits (621),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 109/281 (39%), Positives = 154/281 (55%), Gaps = 39/281 (14%)

Query  112  FDEDAFMRQLEQDMAKMMNHAAQESGAPDHKEFENAINQGADAFTKQLEESGIPPGDFLK  171
             +++ F +QL+++M  +M     ++G            +  D   KQ EE+         
Sbjct  1    LEDEEFAKQLQKEMENLMKELGPDAGE------NAEAAEDFDELLKQFEEAAEAAA----  50

Query  172  QLLADVMAEEGESAGAAAGAGARVGPSAGGSSGSATGAEKATAPESFNDAIQRTINRMKE  231
                                      +AG +  SA+ A  A  PESF D I  T++R+KE
Sbjct  51   --------------------------AAGSAEASASAAGSAAGPESFQDIISETLDRLKE  84

Query  232  SGDKATAAATEDGGISEDMLMQLLKGLEAG-VGNGGDDLDLTQMIAGVMEQFSNKEMLYE  290
            SGDKA AA     G S+D+L QLLK L  G  G  G   D+++M+ G+MEQ S+KE+LYE
Sbjct  85   SGDKADAAIESASGNSDDLLAQLLKQLGLGGGGGDGGGEDMSKMLLGMMEQLSSKEVLYE  144

Query  291  PMKELDAKWGPWLKENKGKVPAEDMKRYEKQAKLVTEIVAKFEEEEYTDEDPKYRQAVWE  350
            PMKEL+ K+  WL+ENK K+ AED +RYEKQ ++V EIVA FE+E+Y+DEDP+ R+ + +
Sbjct  145  PMKELNDKFPEWLEENKEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDREEITD  204

Query  351  KMQEMQALGSPPEELVANPWP--EDMAGDGSGASLPDCPQQ  389
             MQE+Q LGSPP+ELV +  P    + G         C QQ
Sbjct  205  LMQELQDLGSPPKELVGDMPPGLPGLPGLPGANGGEGCKQQ  245



Lambda      K        H        a         alpha
   0.304    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00022553

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461367 pfam04614, Pex19, Pex19 protein family                     242     1e-79


>CDD:461367 pfam04614, Pex19, Pex19 protein family.  
Length=245

 Score = 242 bits (621),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 109/281 (39%), Positives = 154/281 (55%), Gaps = 39/281 (14%)

Query  112  FDEDAFMRQLEQDMAKMMNHAAQESGAPDHKEFENAINQGADAFTKQLEESGIPPGDFLK  171
             +++ F +QL+++M  +M     ++G            +  D   KQ EE+         
Sbjct  1    LEDEEFAKQLQKEMENLMKELGPDAGE------NAEAAEDFDELLKQFEEAAEAAA----  50

Query  172  QLLADVMAEEGESAGAAAGAGARVGPSAGGSSGSATGAEKATAPESFNDAIQRTINRMKE  231
                                      +AG +  SA+ A  A  PESF D I  T++R+KE
Sbjct  51   --------------------------AAGSAEASASAAGSAAGPESFQDIISETLDRLKE  84

Query  232  SGDKATAAATEDGGISEDMLMQLLKGLEAG-VGNGGDDLDLTQMIAGVMEQFSNKEMLYE  290
            SGDKA AA     G S+D+L QLLK L  G  G  G   D+++M+ G+MEQ S+KE+LYE
Sbjct  85   SGDKADAAIESASGNSDDLLAQLLKQLGLGGGGGDGGGEDMSKMLLGMMEQLSSKEVLYE  144

Query  291  PMKELDAKWGPWLKENKGKVPAEDMKRYEKQAKLVTEIVAKFEEEEYTDEDPKYRQAVWE  350
            PMKEL+ K+  WL+ENK K+ AED +RYEKQ ++V EIVA FE+E+Y+DEDP+ R+ + +
Sbjct  145  PMKELNDKFPEWLEENKEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDREEITD  204

Query  351  KMQEMQALGSPPEELVANPWP--EDMAGDGSGASLPDCPQQ  389
             MQE+Q LGSPP+ELV +  P    + G         C QQ
Sbjct  205  LMQELQDLGSPPKELVGDMPPGLPGLPGLPGANGGEGCKQQ  245



Lambda      K        H        a         alpha
   0.304    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00022555

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461367 pfam04614, Pex19, Pex19 protein family                     242     1e-79


>CDD:461367 pfam04614, Pex19, Pex19 protein family.  
Length=245

 Score = 242 bits (621),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 109/281 (39%), Positives = 154/281 (55%), Gaps = 39/281 (14%)

Query  112  FDEDAFMRQLEQDMAKMMNHAAQESGAPDHKEFENAINQGADAFTKQLEESGIPPGDFLK  171
             +++ F +QL+++M  +M     ++G            +  D   KQ EE+         
Sbjct  1    LEDEEFAKQLQKEMENLMKELGPDAGE------NAEAAEDFDELLKQFEEAAEAAA----  50

Query  172  QLLADVMAEEGESAGAAAGAGARVGPSAGGSSGSATGAEKATAPESFNDAIQRTINRMKE  231
                                      +AG +  SA+ A  A  PESF D I  T++R+KE
Sbjct  51   --------------------------AAGSAEASASAAGSAAGPESFQDIISETLDRLKE  84

Query  232  SGDKATAAATEDGGISEDMLMQLLKGLEAG-VGNGGDDLDLTQMIAGVMEQFSNKEMLYE  290
            SGDKA AA     G S+D+L QLLK L  G  G  G   D+++M+ G+MEQ S+KE+LYE
Sbjct  85   SGDKADAAIESASGNSDDLLAQLLKQLGLGGGGGDGGGEDMSKMLLGMMEQLSSKEVLYE  144

Query  291  PMKELDAKWGPWLKENKGKVPAEDMKRYEKQAKLVTEIVAKFEEEEYTDEDPKYRQAVWE  350
            PMKEL+ K+  WL+ENK K+ AED +RYEKQ ++V EIVA FE+E+Y+DEDP+ R+ + +
Sbjct  145  PMKELNDKFPEWLEENKEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDREEITD  204

Query  351  KMQEMQALGSPPEELVANPWP--EDMAGDGSGASLPDCPQQ  389
             MQE+Q LGSPP+ELV +  P    + G         C QQ
Sbjct  205  LMQELQDLGSPPKELVGDMPPGLPGLPGLPGANGGEGCKQQ  245



Lambda      K        H        a         alpha
   0.304    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00027192

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461367 pfam04614, Pex19, Pex19 protein family                     242     1e-79


>CDD:461367 pfam04614, Pex19, Pex19 protein family.  
Length=245

 Score = 242 bits (621),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 109/281 (39%), Positives = 154/281 (55%), Gaps = 39/281 (14%)

Query  112  FDEDAFMRQLEQDMAKMMNHAAQESGAPDHKEFENAINQGADAFTKQLEESGIPPGDFLK  171
             +++ F +QL+++M  +M     ++G            +  D   KQ EE+         
Sbjct  1    LEDEEFAKQLQKEMENLMKELGPDAGE------NAEAAEDFDELLKQFEEAAEAAA----  50

Query  172  QLLADVMAEEGESAGAAAGAGARVGPSAGGSSGSATGAEKATAPESFNDAIQRTINRMKE  231
                                      +AG +  SA+ A  A  PESF D I  T++R+KE
Sbjct  51   --------------------------AAGSAEASASAAGSAAGPESFQDIISETLDRLKE  84

Query  232  SGDKATAAATEDGGISEDMLMQLLKGLEAG-VGNGGDDLDLTQMIAGVMEQFSNKEMLYE  290
            SGDKA AA     G S+D+L QLLK L  G  G  G   D+++M+ G+MEQ S+KE+LYE
Sbjct  85   SGDKADAAIESASGNSDDLLAQLLKQLGLGGGGGDGGGEDMSKMLLGMMEQLSSKEVLYE  144

Query  291  PMKELDAKWGPWLKENKGKVPAEDMKRYEKQAKLVTEIVAKFEEEEYTDEDPKYRQAVWE  350
            PMKEL+ K+  WL+ENK K+ AED +RYEKQ ++V EIVA FE+E+Y+DEDP+ R+ + +
Sbjct  145  PMKELNDKFPEWLEENKEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDREEITD  204

Query  351  KMQEMQALGSPPEELVANPWP--EDMAGDGSGASLPDCPQQ  389
             MQE+Q LGSPP+ELV +  P    + G         C QQ
Sbjct  205  LMQELQDLGSPPKELVGDMPPGLPGLPGLPGANGGEGCKQQ  245



Lambda      K        H        a         alpha
   0.304    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00022556

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00027193

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.300    0.113    0.298    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00022557

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.300    0.113    0.298    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00022558

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00027194

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.323    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00027195

Length=748
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425683 pfam00439, Bromodomain, Bromodomain. Bromodomains are ...  75.8    2e-17


>CDD:425683 pfam00439, Bromodomain, Bromodomain.  Bromodomains are 110 amino 
acid long domains, that are found in many chromatin associated 
proteins. Bromodomains can interact specifically with 
acetylated lysine.
Length=84

 Score = 75.8 bits (187),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 34/74 (46%), Positives = 47/74 (64%), Gaps = 5/74 (7%)

Query  331  EKVLSELKAMTEHSSA--FLTRVNKRDAPDYYTIIKHPMDLGTMTKKLKALQYKSKQEFV  388
             ++L +L    EH  A  FL  V+  + PDYY++IK PMDL T+ KKL+  +YKS  EF+
Sbjct  2    LEILDKLM---EHPIAAPFLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFL  58

Query  389  DDLNLIWSNCFKYN  402
             D+ LI+SN   YN
Sbjct  59   ADVKLIFSNARTYN  72



Lambda      K        H        a         alpha
   0.309    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 951669408


Query= TCONS_00022559

Length=412
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459674 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase     209     3e-66


>CDD:459674 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.  
Length=234

 Score = 209 bits (534),  Expect = 3e-66, Method: Composition-based stats.
 Identities = 88/268 (33%), Positives = 128/268 (48%), Gaps = 44/268 (16%)

Query  98   RNRYVNVQAWANSRIHLRVPEGECDFINASPIVLTDSVSQEERSYIATQGPKVGHFAHFW  157
            +NRY +V  + ++R+ L    G  D+INAS I        + + YIATQGP       FW
Sbjct  4    KNRYKDVLPYDHTRVKLTGDPGPSDYINASYIDGYK----KPKKYIATQGPLPNTVEDFW  59

Query  158  HMVFHESKDVAVIVMLTQTVESGREKCAQYFPLDHDRPSMILRHDEDDPFE-HNEEYEEA  216
             MV+ E   V +IVMLT+  E GREKCAQY+P +               F    ++ +E 
Sbjct  60   RMVWEE--KVTIIVMLTELEEKGREKCAQYWPEEEGESLEY------GDFTVTLKKEKED  111

Query  217  NDNVMGEVTLLESSFDQNSRSEVRKLRLTLA--NESKIVWHFLFAGWADYSKPEGEDREA  274
              +                   VR L ++     E++ V HF + GW D+  PE     +
Sbjct  112  EKDYT-----------------VRTLEVSNGGSEETRTVKHFHYTGWPDHGVPE--SPNS  152

Query  275  LLHLIEL--SASKCSSDNPRIVHCSAGVGRTGTFIALDHLLRELESGQLLKVTDSQTDPV  332
            LL L+     +S      P +VHCSAG+GRTGTFIA+D  L++LE+   +         +
Sbjct  153  LLDLLRKVRKSSLDGRSGPIVVHCSAGIGRTGTFIAIDIALQQLEAEGEVD--------I  204

Query  333  FETVNRMREQRMMMVYNEMQLQFIYEVL  360
            F+ V  +R QR  MV    Q  F+Y+ +
Sbjct  205  FQIVKELRSQRPGMVQTLEQYIFLYDAI  232



Lambda      K        H        a         alpha
   0.316    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 501729466


Query= TCONS_00022560

Length=1179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425683 pfam00439, Bromodomain, Bromodomain. Bromodomains are ...  77.0    1e-17


>CDD:425683 pfam00439, Bromodomain, Bromodomain.  Bromodomains are 110 amino 
acid long domains, that are found in many chromatin associated 
proteins. Bromodomains can interact specifically with 
acetylated lysine.
Length=84

 Score = 77.0 bits (190),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 34/74 (46%), Positives = 47/74 (64%), Gaps = 5/74 (7%)

Query  331  EKVLSELKAMTEHSSA--FLTRVNKRDAPDYYTIIKHPMDLGTMTKKLKALQYKSKQEFV  388
             ++L +L    EH  A  FL  V+  + PDYY++IK PMDL T+ KKL+  +YKS  EF+
Sbjct  2    LEILDKLM---EHPIAAPFLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFL  58

Query  389  DDLNLIWSNCFKYN  402
             D+ LI+SN   YN
Sbjct  59   ADVKLIFSNARTYN  72



Lambda      K        H        a         alpha
   0.309    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1510729516


Query= TCONS_00022562

Length=980
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425683 pfam00439, Bromodomain, Bromodomain. Bromodomains are ...  75.8    2e-17


>CDD:425683 pfam00439, Bromodomain, Bromodomain.  Bromodomains are 110 amino 
acid long domains, that are found in many chromatin associated 
proteins. Bromodomains can interact specifically with 
acetylated lysine.
Length=84

 Score = 75.8 bits (187),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 34/74 (46%), Positives = 47/74 (64%), Gaps = 5/74 (7%)

Query  331  EKVLSELKAMTEHSSA--FLTRVNKRDAPDYYTIIKHPMDLGTMTKKLKALQYKSKQEFV  388
             ++L +L    EH  A  FL  V+  + PDYY++IK PMDL T+ KKL+  +YKS  EF+
Sbjct  2    LEILDKLM---EHPIAAPFLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFL  58

Query  389  DDLNLIWSNCFKYN  402
             D+ LI+SN   YN
Sbjct  59   ADVKLIFSNARTYN  72



Lambda      K        H        a         alpha
   0.311    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1251634384


Query= TCONS_00027196

Length=748
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425683 pfam00439, Bromodomain, Bromodomain. Bromodomains are ...  75.8    2e-17


>CDD:425683 pfam00439, Bromodomain, Bromodomain.  Bromodomains are 110 amino 
acid long domains, that are found in many chromatin associated 
proteins. Bromodomains can interact specifically with 
acetylated lysine.
Length=84

 Score = 75.8 bits (187),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 34/74 (46%), Positives = 47/74 (64%), Gaps = 5/74 (7%)

Query  331  EKVLSELKAMTEHSSA--FLTRVNKRDAPDYYTIIKHPMDLGTMTKKLKALQYKSKQEFV  388
             ++L +L    EH  A  FL  V+  + PDYY++IK PMDL T+ KKL+  +YKS  EF+
Sbjct  2    LEILDKLM---EHPIAAPFLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFL  58

Query  389  DDLNLIWSNCFKYN  402
             D+ LI+SN   YN
Sbjct  59   ADVKLIFSNARTYN  72



Lambda      K        H        a         alpha
   0.309    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 951669408


Query= TCONS_00022563

Length=748
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425683 pfam00439, Bromodomain, Bromodomain. Bromodomains are ...  75.8    2e-17


>CDD:425683 pfam00439, Bromodomain, Bromodomain.  Bromodomains are 110 amino 
acid long domains, that are found in many chromatin associated 
proteins. Bromodomains can interact specifically with 
acetylated lysine.
Length=84

 Score = 75.8 bits (187),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 34/74 (46%), Positives = 47/74 (64%), Gaps = 5/74 (7%)

Query  331  EKVLSELKAMTEHSSA--FLTRVNKRDAPDYYTIIKHPMDLGTMTKKLKALQYKSKQEFV  388
             ++L +L    EH  A  FL  V+  + PDYY++IK PMDL T+ KKL+  +YKS  EF+
Sbjct  2    LEILDKLM---EHPIAAPFLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFL  58

Query  389  DDLNLIWSNCFKYN  402
             D+ LI+SN   YN
Sbjct  59   ADVKLIFSNARTYN  72



Lambda      K        H        a         alpha
   0.309    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 951669408


Query= TCONS_00027198

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396649 pfam02171, Piwi, Piwi domain. This domain is found in ...  217     2e-67
CDD:465136 pfam16488, ArgoL2, Argonaute linker 2 domain. ArgoL2 i...  65.5    2e-14


>CDD:396649 pfam02171, Piwi, Piwi domain.  This domain is found in the protein 
Piwi and its relatives. The function of this domain is 
the dsRNA guided hydrolysis of ssRNA. Determination of the 
crystal structure of Argonaute reveals that PIWI is an RNase 
H domain, and identifies Argonaute as Slicer, the enzyme that 
cleaves mRNA in the RNAi RISC complex. In addition, Mg+2 
dependence and production of 3'-OH and 5' phosphate products 
are shared characteristics of RNaseH and RISC. The PIWI domain 
core has a tertiary structure belonging to the RNase H family 
of enzymes. RNase H fold proteins all have a five-stranded 
mixed beta-sheet surrounded by helices. By analogy to RNase 
H enzymes which cleave single-stranded RNA guided by the 
DNA strand in an RNA/DNA hybrid, the PIWI domain can be inferred 
to cleave single-stranded RNA, for example mRNA, guided 
by double stranded siRNA.
Length=296

 Score = 217 bits (555),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 107/291 (37%), Positives = 154/291 (53%), Gaps = 16/291 (5%)

Query  193  LLLIIVPDKNSFTYTRIKKSCDCRWGVPSQVLQSGHCVKLN-PQYASNVLMKVNAKLGGT  251
            L+L+I+P+KN   Y  IKK  +   G+PSQ + S   +K    Q  +NVL+K+N KLGG 
Sbjct  1    LILVILPEKNKDLYHSIKKYLETDLGIPSQCILSKTILKRTLKQTLTNVLLKINVKLGGI  60

Query  252  TARAVPKVTDATLRPRSMIIGADVTHPSLG-VWSPSMAAMSVCMDTFGGRYWGACEANGD  310
                   + +       +IIG D++H + G   +PS+AA+    D    RY+G       
Sbjct  61   N----YWIVEIKP-KVDVIIGFDISHGTAGTDDNPSVAAVVASFDKGNSRYFGTVRTQAS  115

Query  311  RLEIIATSNIEVILTPLIREWMATVGEGRAPEHVYYFRDGVSTGQFEQVLQQEVFDIKAI  370
              E++    ++ I+  L+R +  +  +   PE +  +RDGVS GQF QVL  EV  IK  
Sbjct  116  GQELLE--PLKDIIKELLRSFQKSSRK--KPERIIVYRDGVSEGQFPQVLNYEVNQIKEA  171

Query  371  FMKLTQDQFKGKFTVIVANKRHHLRAFPRPGDRNSADRNGNPLPGTLITRDVTSPHDWDF  430
               L    +  K TVIV  KRHH R F      +  D + NP PGT++   +T P  +DF
Sbjct  172  CKSL-GPGYNPKLTVIVVQKRHHTRFFAN----DKPDGDQNPPPGTVVDDVITLPEYYDF  226

Query  431  LLYSHIALQGTSRPVHYHVILDQIKHKAQELENMIYDHCYQYMRSTTSVSL  481
             L SH  LQGT +P HY V+ D+I   A EL+N+ Y  C+ Y RST  +S+
Sbjct  227  YLCSHAGLQGTVKPTHYTVLYDEIGLSADELQNLTYKLCHMYYRSTRPISI  277


>CDD:465136 pfam16488, ArgoL2, Argonaute linker 2 domain.  ArgoL2 is the 
second linker domain in eukaryotic argonaute proteins. It starts 
with two alpha-helices aligned orthogonally to each other 
followed by a beta-strand involved in linking the two lobes, 
the PAZ lobe and the Piwi lobe of argonaute to each other. 
Linker 2 together with the N, PAZ and L1 domains form a compact 
global fold. Numerous residues from Piwi, L1 and L2 linkers 
direct the path of the phosphate backbone of nucleotides 
7-9, thus allowing DNA-slicing.
Length=47

 Score = 65.5 bits (161),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (60%), Gaps = 0/47 (0%)

Query  46  DRLNSIHKSKAMLDHAKDPVLNTFGLAIDNNMIRTKARLLPSPDIQF  92
           +R  SI +   +L + +DP L  FG+++D  MI    R+LP P +++
Sbjct  1   ERAESIVEGLKVLGYDQDPYLREFGISVDPQMITVPGRVLPPPKLKY  47



Lambda      K        H        a         alpha
   0.322    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00027197

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396649 pfam02171, Piwi, Piwi domain. This domain is found in ...  217     2e-66
CDD:465136 pfam16488, ArgoL2, Argonaute linker 2 domain. ArgoL2 i...  65.9    2e-14
CDD:460472 pfam02170, PAZ, PAZ domain. This domain is named PAZ a...  60.3    1e-11


>CDD:396649 pfam02171, Piwi, Piwi domain.  This domain is found in the protein 
Piwi and its relatives. The function of this domain is 
the dsRNA guided hydrolysis of ssRNA. Determination of the 
crystal structure of Argonaute reveals that PIWI is an RNase 
H domain, and identifies Argonaute as Slicer, the enzyme that 
cleaves mRNA in the RNAi RISC complex. In addition, Mg+2 
dependence and production of 3'-OH and 5' phosphate products 
are shared characteristics of RNaseH and RISC. The PIWI domain 
core has a tertiary structure belonging to the RNase H family 
of enzymes. RNase H fold proteins all have a five-stranded 
mixed beta-sheet surrounded by helices. By analogy to RNase 
H enzymes which cleave single-stranded RNA guided by the 
DNA strand in an RNA/DNA hybrid, the PIWI domain can be inferred 
to cleave single-stranded RNA, for example mRNA, guided 
by double stranded siRNA.
Length=296

 Score = 217 bits (554),  Expect = 2e-66, Method: Composition-based stats.
 Identities = 107/291 (37%), Positives = 154/291 (53%), Gaps = 16/291 (5%)

Query  303  LLLIIVPDKNSFTYTRIKKSCDCRWGVPSQVLQSGHCVKLN-PQYASNVLMKVNAKLGGT  361
            L+L+I+P+KN   Y  IKK  +   G+PSQ + S   +K    Q  +NVL+K+N KLGG 
Sbjct  1    LILVILPEKNKDLYHSIKKYLETDLGIPSQCILSKTILKRTLKQTLTNVLLKINVKLGGI  60

Query  362  TARAVPKVTDATLRPRSMIIGADVTHPSLG-VWSPSMAAMSVCMDTFGGRYWGACEANGD  420
                   + +       +IIG D++H + G   +PS+AA+    D    RY+G       
Sbjct  61   N----YWIVEIKP-KVDVIIGFDISHGTAGTDDNPSVAAVVASFDKGNSRYFGTVRTQAS  115

Query  421  RLEIIATSNIEVILTPLIREWMATVGEGRAPEHVYYFRDGVSTGQFEQVLQQEVFDIKAI  480
              E++    ++ I+  L+R +  +  +   PE +  +RDGVS GQF QVL  EV  IK  
Sbjct  116  GQELLE--PLKDIIKELLRSFQKSSRK--KPERIIVYRDGVSEGQFPQVLNYEVNQIKEA  171

Query  481  FMKLTQDQFKGKFTVIVANKRHHLRAFPRPGDRNSADRNGNPLPGTLITRDVTSPHDWDF  540
               L    +  K TVIV  KRHH R F      +  D + NP PGT++   +T P  +DF
Sbjct  172  CKSL-GPGYNPKLTVIVVQKRHHTRFFAN----DKPDGDQNPPPGTVVDDVITLPEYYDF  226

Query  541  LLYSHIALQGTSRPVHYHVILDQIKHKAQELENMIYDHCYQYMRSTTSVSL  591
             L SH  LQGT +P HY V+ D+I   A EL+N+ Y  C+ Y RST  +S+
Sbjct  227  YLCSHAGLQGTVKPTHYTVLYDEIGLSADELQNLTYKLCHMYYRSTRPISI  277


>CDD:465136 pfam16488, ArgoL2, Argonaute linker 2 domain.  ArgoL2 is the 
second linker domain in eukaryotic argonaute proteins. It starts 
with two alpha-helices aligned orthogonally to each other 
followed by a beta-strand involved in linking the two lobes, 
the PAZ lobe and the Piwi lobe of argonaute to each other. 
Linker 2 together with the N, PAZ and L1 domains form a compact 
global fold. Numerous residues from Piwi, L1 and L2 linkers 
direct the path of the phosphate backbone of nucleotides 
7-9, thus allowing DNA-slicing.
Length=47

 Score = 65.9 bits (162),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (60%), Gaps = 0/47 (0%)

Query  156  DRLNSIHKSKAMLDHAKDPVLNTFGLAIDNNMIRTKARLLPSPDIQF  202
            +R  SI +   +L + +DP L  FG+++D  MI    R+LP P +++
Sbjct  1    ERAESIVEGLKVLGYDQDPYLREFGISVDPQMITVPGRVLPPPKLKY  47


>CDD:460472 pfam02170, PAZ, PAZ domain.  This domain is named PAZ after the 
proteins Piwi Argonaut and Zwille. This domain is found in 
two families of proteins that are involved in post-transcriptional 
gene silencing. These are the Piwi family and the Dicer 
family, that includes the Carpel factory protein. The function 
of the domains is unknown but has been suggested to 
mediate complex formation between proteins of the Piwi and Dicer 
families by hetero-dimerization. The three-dimensional 
structure of this domain has been solved. The PAZ domain is 
composed of two subdomains. One subdomain is similar to the 
OB fold, albeit with a different topology. The OB-fold is well 
known as a single-stranded nucleic acid binding fold. The 
second subdomain is composed of a beta-hairpin followed by 
an alpha-helix. The PAZ domains shows low-affinity nucleic acid 
binding and appears to interact with the 3' ends of single-stranded 
regions of RNA in the cleft between the two subdomains. 
PAZ can bind the characteristic two-base 3' overhangs 
of siRNAs, indicating that although PAZ may not be a primary 
nucleic acid binding site in Dicer or RISC, it may contribute 
to the specific and productive incorporation of siRNAs 
and miRNAs into the RNAi pathway.
Length=123

 Score = 60.3 bits (147),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 24/90 (27%), Positives = 45/90 (50%), Gaps = 9/90 (10%)

Query  62   FIVKGLLNANARQYTIEIKDKATGKTQKMSVEAYFKRKYNLTLNYWELPMVEMTKKG--V  119
            + + G+      + T  +KD      ++++V  YFK+KYN+ L Y + P++ + KK   V
Sbjct  39   YRIDGITFDPTPESTFPLKDG-----KEITVVDYFKKKYNIDLKYPDQPLLLVGKKRPKV  93

Query  120  VYPMEVLTIHGLHRYPWKL--NEYQTSAMI  147
              P E+  +    RY  KL  +  Q + ++
Sbjct  94   YLPPELCNLVDGQRYTKKLMPSIAQRTRLL  123



Lambda      K        H        a         alpha
   0.322    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 781585844


Query= TCONS_00027199

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396649 pfam02171, Piwi, Piwi domain. This domain is found in ...  193     1e-57
CDD:465136 pfam16488, ArgoL2, Argonaute linker 2 domain. ArgoL2 i...  65.9    2e-14
CDD:460472 pfam02170, PAZ, PAZ domain. This domain is named PAZ a...  61.1    6e-12


>CDD:396649 pfam02171, Piwi, Piwi domain.  This domain is found in the protein 
Piwi and its relatives. The function of this domain is 
the dsRNA guided hydrolysis of ssRNA. Determination of the 
crystal structure of Argonaute reveals that PIWI is an RNase 
H domain, and identifies Argonaute as Slicer, the enzyme that 
cleaves mRNA in the RNAi RISC complex. In addition, Mg+2 
dependence and production of 3'-OH and 5' phosphate products 
are shared characteristics of RNaseH and RISC. The PIWI domain 
core has a tertiary structure belonging to the RNase H family 
of enzymes. RNase H fold proteins all have a five-stranded 
mixed beta-sheet surrounded by helices. By analogy to RNase 
H enzymes which cleave single-stranded RNA guided by the 
DNA strand in an RNA/DNA hybrid, the PIWI domain can be inferred 
to cleave single-stranded RNA, for example mRNA, guided 
by double stranded siRNA.
Length=296

 Score = 193 bits (492),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 96/265 (36%), Positives = 138/265 (52%), Gaps = 16/265 (6%)

Query  303  LLLIIVPDKNSFTYTRIKKSCDCRWGVPSQVLQSGHCVKLN-PQYASNVLMKVNAKLGGT  361
            L+L+I+P+KN   Y  IKK  +   G+PSQ + S   +K    Q  +NVL+K+N KLGG 
Sbjct  1    LILVILPEKNKDLYHSIKKYLETDLGIPSQCILSKTILKRTLKQTLTNVLLKINVKLGGI  60

Query  362  TARAVPKVTDATLRPRSMIIGADVTHPSLG-VWSPSMAAMSVCMDTFGGRYWGACEANGD  420
                   + +       +IIG D++H + G   +PS+AA+    D    RY+G       
Sbjct  61   N----YWIVEIKP-KVDVIIGFDISHGTAGTDDNPSVAAVVASFDKGNSRYFGTVRTQAS  115

Query  421  RLEIIATSNIEVILTPLIREWMATVGEGRAPEHVYYFRDGVSTGQFEQVLQQEVFDIKAI  480
              E++    ++ I+  L+R +  +  +   PE +  +RDGVS GQF QVL  EV  IK  
Sbjct  116  GQELLE--PLKDIIKELLRSFQKSSRK--KPERIIVYRDGVSEGQFPQVLNYEVNQIKEA  171

Query  481  FMKLTQDQFKGKFTVIVANKRHHLRAFPRPGDRNSADRNGNPLPGTLITRDVTSPHDWDF  540
               L    +  K TVIV  KRHH R F      +  D + NP PGT++   +T P  +DF
Sbjct  172  CKSL-GPGYNPKLTVIVVQKRHHTRFFAN----DKPDGDQNPPPGTVVDDVITLPEYYDF  226

Query  541  LLYSHIALQGTSRPVHYHVILDQIK  565
             L SH  LQGT +P HY V+ D+I 
Sbjct  227  YLCSHAGLQGTVKPTHYTVLYDEIG  251


>CDD:465136 pfam16488, ArgoL2, Argonaute linker 2 domain.  ArgoL2 is the 
second linker domain in eukaryotic argonaute proteins. It starts 
with two alpha-helices aligned orthogonally to each other 
followed by a beta-strand involved in linking the two lobes, 
the PAZ lobe and the Piwi lobe of argonaute to each other. 
Linker 2 together with the N, PAZ and L1 domains form a compact 
global fold. Numerous residues from Piwi, L1 and L2 linkers 
direct the path of the phosphate backbone of nucleotides 
7-9, thus allowing DNA-slicing.
Length=47

 Score = 65.9 bits (162),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (60%), Gaps = 0/47 (0%)

Query  156  DRLNSIHKSKAMLDHAKDPVLNTFGLAIDNNMIRTKARLLPSPDIQF  202
            +R  SI +   +L + +DP L  FG+++D  MI    R+LP P +++
Sbjct  1    ERAESIVEGLKVLGYDQDPYLREFGISVDPQMITVPGRVLPPPKLKY  47


>CDD:460472 pfam02170, PAZ, PAZ domain.  This domain is named PAZ after the 
proteins Piwi Argonaut and Zwille. This domain is found in 
two families of proteins that are involved in post-transcriptional 
gene silencing. These are the Piwi family and the Dicer 
family, that includes the Carpel factory protein. The function 
of the domains is unknown but has been suggested to 
mediate complex formation between proteins of the Piwi and Dicer 
families by hetero-dimerization. The three-dimensional 
structure of this domain has been solved. The PAZ domain is 
composed of two subdomains. One subdomain is similar to the 
OB fold, albeit with a different topology. The OB-fold is well 
known as a single-stranded nucleic acid binding fold. The 
second subdomain is composed of a beta-hairpin followed by 
an alpha-helix. The PAZ domains shows low-affinity nucleic acid 
binding and appears to interact with the 3' ends of single-stranded 
regions of RNA in the cleft between the two subdomains. 
PAZ can bind the characteristic two-base 3' overhangs 
of siRNAs, indicating that although PAZ may not be a primary 
nucleic acid binding site in Dicer or RISC, it may contribute 
to the specific and productive incorporation of siRNAs 
and miRNAs into the RNAi pathway.
Length=123

 Score = 61.1 bits (149),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 24/90 (27%), Positives = 45/90 (50%), Gaps = 9/90 (10%)

Query  62   FIVKGLLNANARQYTIEIKDKATGKTQKMSVEAYFKRKYNLTLNYWELPMVEMTKKG--V  119
            + + G+      + T  +KD      ++++V  YFK+KYN+ L Y + P++ + KK   V
Sbjct  39   YRIDGITFDPTPESTFPLKDG-----KEITVVDYFKKKYNIDLKYPDQPLLLVGKKRPKV  93

Query  120  VYPMEVLTIHGLHRYPWKL--NEYQTSAMI  147
              P E+  +    RY  KL  +  Q + ++
Sbjct  94   YLPPELCNLVDGQRYTKKLMPSIAQRTRLL  123



Lambda      K        H        a         alpha
   0.321    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 711347728


Query= TCONS_00022564

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.293    0.122    0.319    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00022565

Length=140
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461412 pfam04729, ASF1_hist_chap, ASF1 like histone chaperone...  215     7e-74


>CDD:461412 pfam04729, ASF1_hist_chap, ASF1 like histone chaperone.  This 
family includes the yeast and human ASF1 protein. These proteins 
have histone chaperone activity. ASF1 participates in 
both the replication-dependent and replication-independent pathways. 
The structure three-dimensional has been determined 
as a a compact immunoglobulin-like beta sandwich fold topped 
by three helical linkers.
Length=154

 Score = 215 bits (550),  Expect = 7e-74, Method: Composition-based stats.
 Identities = 81/106 (76%), Positives = 94/106 (89%), Gaps = 0/106 (0%)

Query  9    SSSEYDQELDSLLVGPIPVGVNKFLFEADAPDLKRIPTSEILGVTVILLTCSYDGREFVR  68
             S EYDQELDS+LVGP+PVGVNKF+FEAD PD  +IP  +ILGVTVILLTCSY G+EF+R
Sbjct  49   ESEEYDQELDSVLVGPVPVGVNKFVFEADPPDPSKIPPEDILGVTVILLTCSYRGQEFIR  108

Query  69   VGYYVNNEYDSEELTQDPPAKPIIERIRRNILAEKPRVTRFAIKWD  114
            VGYYVNNEYD  EL ++PPAKPII++++RNILAEKPRVTRF IKWD
Sbjct  109  VGYYVNNEYDDPELRENPPAKPIIDKLQRNILAEKPRVTRFPIKWD  154



Lambda      K        H        a         alpha
   0.315    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00022566

Length=153
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461412 pfam04729, ASF1_hist_chap, ASF1 like histone chaperone...  308     2e-110


>CDD:461412 pfam04729, ASF1_hist_chap, ASF1 like histone chaperone.  This 
family includes the yeast and human ASF1 protein. These proteins 
have histone chaperone activity. ASF1 participates in 
both the replication-dependent and replication-independent pathways. 
The structure three-dimensional has been determined 
as a a compact immunoglobulin-like beta sandwich fold topped 
by three helical linkers.
Length=154

 Score = 308 bits (792),  Expect = 2e-110, Method: Composition-based stats.
 Identities = 113/153 (74%), Positives = 134/153 (88%), Gaps = 0/153 (0%)

Query  1    MSVVSLLGVKIVNNPAPFLAPYQFEITFECLEQLQKDLEWKLTYVGSATSSEYDQELDSL  60
            MS+V++  V+++NNPAPF  P+QFEITFECLE L+ DLEWKL YVGSA S EYDQELDS+
Sbjct  1    MSLVNVTNVEVLNNPAPFTDPFQFEITFECLEPLKDDLEWKLIYVGSAESEEYDQELDSV  60

Query  61   LVGPIPVGVNKFLFEADAPDLKRIPTSEILGVTVILLTCSYDGREFVRVGYYVNNEYDSE  120
            LVGP+PVGVNKF+FEAD PD  +IP  +ILGVTVILLTCSY G+EF+RVGYYVNNEYD  
Sbjct  61   LVGPVPVGVNKFVFEADPPDPSKIPPEDILGVTVILLTCSYRGQEFIRVGYYVNNEYDDP  120

Query  121  ELTQDPPAKPIIERIRRNILAEKPRVTRFAIKW  153
            EL ++PPAKPII++++RNILAEKPRVTRF IKW
Sbjct  121  ELRENPPAKPIIDKLQRNILAEKPRVTRFPIKW  153



Lambda      K        H        a         alpha
   0.319    0.139    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00022567

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461412 pfam04729, ASF1_hist_chap, ASF1 like histone chaperone...  315     7e-111


>CDD:461412 pfam04729, ASF1_hist_chap, ASF1 like histone chaperone.  This 
family includes the yeast and human ASF1 protein. These proteins 
have histone chaperone activity. ASF1 participates in 
both the replication-dependent and replication-independent pathways. 
The structure three-dimensional has been determined 
as a a compact immunoglobulin-like beta sandwich fold topped 
by three helical linkers.
Length=154

 Score = 315 bits (809),  Expect = 7e-111, Method: Composition-based stats.
 Identities = 114/154 (74%), Positives = 135/154 (88%), Gaps = 0/154 (0%)

Query  1    MSVVSLLGVKIVNNPAPFLAPYQFEITFECLEQLQKDLEWKLTYVGSATSSEYDQELDSL  60
            MS+V++  V+++NNPAPF  P+QFEITFECLE L+ DLEWKL YVGSA S EYDQELDS+
Sbjct  1    MSLVNVTNVEVLNNPAPFTDPFQFEITFECLEPLKDDLEWKLIYVGSAESEEYDQELDSV  60

Query  61   LVGPIPVGVNKFLFEADAPDLKRIPTSEILGVTVILLTCSYDGREFVRVGYYVNNEYDSE  120
            LVGP+PVGVNKF+FEAD PD  +IP  +ILGVTVILLTCSY G+EF+RVGYYVNNEYD  
Sbjct  61   LVGPVPVGVNKFVFEADPPDPSKIPPEDILGVTVILLTCSYRGQEFIRVGYYVNNEYDDP  120

Query  121  ELTQDPPAKPIIERIRRNILAEKPRVTRFAIKWD  154
            EL ++PPAKPII++++RNILAEKPRVTRF IKWD
Sbjct  121  ELRENPPAKPIIDKLQRNILAEKPRVTRFPIKWD  154



Lambda      K        H        a         alpha
   0.308    0.132    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00022568

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461412 pfam04729, ASF1_hist_chap, ASF1 like histone chaperone...  304     3e-108


>CDD:461412 pfam04729, ASF1_hist_chap, ASF1 like histone chaperone.  This 
family includes the yeast and human ASF1 protein. These proteins 
have histone chaperone activity. ASF1 participates in 
both the replication-dependent and replication-independent pathways. 
The structure three-dimensional has been determined 
as a a compact immunoglobulin-like beta sandwich fold topped 
by three helical linkers.
Length=154

 Score = 304 bits (782),  Expect = 3e-108, Method: Composition-based stats.
 Identities = 113/153 (74%), Positives = 134/153 (88%), Gaps = 0/153 (0%)

Query  1    MSVVSLLGVKIVNNPAPFLAPYQFEITFECLEQLQKDLEWKLTYVGSATSSEYDQELDSL  60
            MS+V++  V+++NNPAPF  P+QFEITFECLE L+ DLEWKL YVGSA S EYDQELDS+
Sbjct  1    MSLVNVTNVEVLNNPAPFTDPFQFEITFECLEPLKDDLEWKLIYVGSAESEEYDQELDSV  60

Query  61   LVGPIPVGVNKFLFEADAPDLKRIPTSEILGVTVILLTCSYDGREFVRVGYYVNNEYDSE  120
            LVGP+PVGVNKF+FEAD PD  +IP  +ILGVTVILLTCSY G+EF+RVGYYVNNEYD  
Sbjct  61   LVGPVPVGVNKFVFEADPPDPSKIPPEDILGVTVILLTCSYRGQEFIRVGYYVNNEYDDP  120

Query  121  ELTQDPPAKPIIERIRRNILAEKPRVTRFAIKW  153
            EL ++PPAKPII++++RNILAEKPRVTRF IKW
Sbjct  121  ELRENPPAKPIIDKLQRNILAEKPRVTRFPIKW  153



Lambda      K        H        a         alpha
   0.315    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00022569

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00027201

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00022570

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  127     2e-35
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  91.5    1e-22


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 127 bits (322),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 52/176 (30%), Positives = 83/176 (47%), Gaps = 10/176 (6%)

Query  17   VAEYLFRRLHEVGIRSVHGVPGDYNLAALDYLPKC-GLHWVGNCNELNAGYAADGYARVN  75
             AE L   L  +G+ +V GVPG + L  LD L K  G+ +V   +E  A +AADGYAR  
Sbjct  1    GAEALADVLKALGVDTVFGVPGGHILPLLDALAKSPGIRYVLTRHEQGAAFAADGYARAT  60

Query  76   G-ISALITTFGVGELSAINAIAGAYSEFVPIVHIVGQPHTRSQRDGMLLHHTLGNGDYNV  134
            G    ++ T G G  +A+  +A AY + VP++ I GQ        G L            
Sbjct  61   GKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVGRGAL-------QQELD  113

Query  135  FARMNAGVSTTVGRLNDTHEVATLIDNAIRECWI-RSRPVYITLPTDMVTKKIEGE  189
               +   V+    R+    E+  ++  A R     R  PVY+ +P D++ ++++ +
Sbjct  114  QLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDVLLEEVDED  169


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 91.5 bits (228),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 37/138 (27%), Positives = 58/138 (42%), Gaps = 2/138 (1%)

Query  211  VDVVLKYLHAAQRPVILVDACAIRHKVLQEVHDLMEASGLPTFVAPMGKGAVDETHKNYG  270
            ++   + L  A+RPVIL      R    +E+ +L E  G+P     MGKGA  E H  Y 
Sbjct  1    IEKAAELLKKAKRPVILAGGGVRRSGASEELRELAEKLGIPVVTTLMGKGAFPEDHPLYL  60

Query  271  GVYAGDGSNTGVREQVESSDLILSIGAIKSDFNTAGFTYRI-GQLNTIDFHSTYVRVRYS  329
            G   G        E +E +DL+L++GA   D  T G           I        +  +
Sbjct  61   G-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDPAEIGKN  119

Query  330  EYPDINMKGVLRKVIQKL  347
               D+ + G  ++ ++ L
Sbjct  120  YPVDVPIVGDAKETLEAL  137



Lambda      K        H        a         alpha
   0.319    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00022571

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  93.4    2e-23
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  74.5    2e-16


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 93.4 bits (233),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 37/138 (27%), Positives = 58/138 (42%), Gaps = 2/138 (1%)

Query  91   VDVVLKYLHAAQRPVILVDACAIRHKVLQEVHDLMEASGLPTFVAPMGKGAVDETHKNYG  150
            ++   + L  A+RPVIL      R    +E+ +L E  G+P     MGKGA  E H  Y 
Sbjct  1    IEKAAELLKKAKRPVILAGGGVRRSGASEELRELAEKLGIPVVTTLMGKGAFPEDHPLYL  60

Query  151  GVYAGDGSNTGVREQVESSDLILSIGAIKSDFNTAGFTYRI-GQLNTIDFHSTYVRVRYS  209
            G   G        E +E +DL+L++GA   D  T G           I        +  +
Sbjct  61   G-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDPAEIGKN  119

Query  210  EYPDINMKGVLRKVIQKL  227
               D+ + G  ++ ++ L
Sbjct  120  YPVDVPIVGDAKETLEAL  137


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 74.5 bits (184),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 35/122 (29%), Positives = 58/122 (48%), Gaps = 20/122 (16%)

Query  301  WGSIGYSVGACQGAALAAKEQGNRRTILFVGDGSIQLTLQEISTMIRNKLNPIIFVICNE  360
             G++GY + A  GA LA     +R  +   GDG  Q+ LQE++T +R  L   + V+ N 
Sbjct  27   LGTMGYGLPAAIGAKLARP---DRPVVAIAGDGGFQMNLQELATAVRYNLPITVVVLNNG  83

Query  361  GYTIERYIHGWE----------ASYNDIQQWDYKSLPVAFGAGKDYKGYRVKTKDDMIKL  410
            GY + R   G +           S   +   D+  L  A+GA    KG RV++ +++ + 
Sbjct  84   GYGMTR---GQQTPFGGGRYSGPSGKILPPVDFAKLAEAYGA----KGARVESPEELEEA  136

Query  411  FE  412
             +
Sbjct  137  LK  138



Lambda      K        H        a         alpha
   0.318    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00022573

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  129     1e-35
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  92.2    9e-23
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  73.4    5e-16


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 129 bits (326),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 52/176 (30%), Positives = 83/176 (47%), Gaps = 10/176 (6%)

Query  17   VAEYLFRRLHEVGIRSVHGVPGDYNLAALDYLPKC-GLHWVGNCNELNAGYAADGYARVN  75
             AE L   L  +G+ +V GVPG + L  LD L K  G+ +V   +E  A +AADGYAR  
Sbjct  1    GAEALADVLKALGVDTVFGVPGGHILPLLDALAKSPGIRYVLTRHEQGAAFAADGYARAT  60

Query  76   G-ISALITTFGVGELSAINAIAGAYSEFVPIVHIVGQPHTRSQRDGMLLHHTLGNGDYNV  134
            G    ++ T G G  +A+  +A AY + VP++ I GQ        G L            
Sbjct  61   GKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVGRGAL-------QQELD  113

Query  135  FARMNAGVSTTVGRLNDTHEVATLIDNAIRECWI-RSRPVYITLPTDMVTKKIEGE  189
               +   V+    R+    E+  ++  A R     R  PVY+ +P D++ ++++ +
Sbjct  114  QLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDVLLEEVDED  169


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 92.2 bits (230),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 37/138 (27%), Positives = 58/138 (42%), Gaps = 2/138 (1%)

Query  211  VDVVLKYLHAAQRPVILVDACAIRHKVLQEVHDLMEASGLPTFVAPMGKGAVDETHKNYG  270
            ++   + L  A+RPVIL      R    +E+ +L E  G+P     MGKGA  E H  Y 
Sbjct  1    IEKAAELLKKAKRPVILAGGGVRRSGASEELRELAEKLGIPVVTTLMGKGAFPEDHPLYL  60

Query  271  GVYAGDGSNTGVREQVESSDLILSIGAIKSDFNTAGFTYRI-GQLNTIDFHSTYVRVRYS  329
            G   G        E +E +DL+L++GA   D  T G           I        +  +
Sbjct  61   G-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDPAEIGKN  119

Query  330  EYPDINMKGVLRKVIQKL  347
               D+ + G  ++ ++ L
Sbjct  120  YPVDVPIVGDAKETLEAL  137


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 73.4 bits (181),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 35/122 (29%), Positives = 58/122 (48%), Gaps = 20/122 (16%)

Query  421  WGSIGYSVGACQGAALAAKEQGNRRTILFVGDGSIQLTLQEISTMIRNKLNPIIFVICNE  480
             G++GY + A  GA LA     +R  +   GDG  Q+ LQE++T +R  L   + V+ N 
Sbjct  27   LGTMGYGLPAAIGAKLARP---DRPVVAIAGDGGFQMNLQELATAVRYNLPITVVVLNNG  83

Query  481  GYTIERYIHGWE----------ASYNDIQQWDYKSLPVAFGAGKDYKGYRVKTKDDMIKL  530
            GY + R   G +           S   +   D+  L  A+GA    KG RV++ +++ + 
Sbjct  84   GYGMTR---GQQTPFGGGRYSGPSGKILPPVDFAKLAEAYGA----KGARVESPEELEEA  136

Query  531  FE  532
             +
Sbjct  137  LK  138



Lambda      K        H        a         alpha
   0.319    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 714336584


Query= TCONS_00022572

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  93.4    2e-23
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  74.5    2e-16


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 93.4 bits (233),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 37/138 (27%), Positives = 58/138 (42%), Gaps = 2/138 (1%)

Query  91   VDVVLKYLHAAQRPVILVDACAIRHKVLQEVHDLMEASGLPTFVAPMGKGAVDETHKNYG  150
            ++   + L  A+RPVIL      R    +E+ +L E  G+P     MGKGA  E H  Y 
Sbjct  1    IEKAAELLKKAKRPVILAGGGVRRSGASEELRELAEKLGIPVVTTLMGKGAFPEDHPLYL  60

Query  151  GVYAGDGSNTGVREQVESSDLILSIGAIKSDFNTAGFTYRI-GQLNTIDFHSTYVRVRYS  209
            G   G        E +E +DL+L++GA   D  T G           I        +  +
Sbjct  61   G-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDPAEIGKN  119

Query  210  EYPDINMKGVLRKVIQKL  227
               D+ + G  ++ ++ L
Sbjct  120  YPVDVPIVGDAKETLEAL  137


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 74.5 bits (184),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 35/122 (29%), Positives = 58/122 (48%), Gaps = 20/122 (16%)

Query  301  WGSIGYSVGACQGAALAAKEQGNRRTILFVGDGSIQLTLQEISTMIRNKLNPIIFVICNE  360
             G++GY + A  GA LA     +R  +   GDG  Q+ LQE++T +R  L   + V+ N 
Sbjct  27   LGTMGYGLPAAIGAKLARP---DRPVVAIAGDGGFQMNLQELATAVRYNLPITVVVLNNG  83

Query  361  GYTIERYIHGWE----------ASYNDIQQWDYKSLPVAFGAGKDYKGYRVKTKDDMIKL  410
            GY + R   G +           S   +   D+  L  A+GA    KG RV++ +++ + 
Sbjct  84   GYGMTR---GQQTPFGGGRYSGPSGKILPPVDFAKLAEAYGA----KGARVESPEELEEA  136

Query  411  FE  412
             +
Sbjct  137  LK  138



Lambda      K        H        a         alpha
   0.318    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00022574

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  128     2e-35
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  92.2    9e-23
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  63.4    1e-12


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 128 bits (324),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 52/176 (30%), Positives = 83/176 (47%), Gaps = 10/176 (6%)

Query  17   VAEYLFRRLHEVGIRSVHGVPGDYNLAALDYLPKC-GLHWVGNCNELNAGYAADGYARVN  75
             AE L   L  +G+ +V GVPG + L  LD L K  G+ +V   +E  A +AADGYAR  
Sbjct  1    GAEALADVLKALGVDTVFGVPGGHILPLLDALAKSPGIRYVLTRHEQGAAFAADGYARAT  60

Query  76   G-ISALITTFGVGELSAINAIAGAYSEFVPIVHIVGQPHTRSQRDGMLLHHTLGNGDYNV  134
            G    ++ T G G  +A+  +A AY + VP++ I GQ        G L            
Sbjct  61   GKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVGRGAL-------QQELD  113

Query  135  FARMNAGVSTTVGRLNDTHEVATLIDNAIRECWI-RSRPVYITLPTDMVTKKIEGE  189
               +   V+    R+    E+  ++  A R     R  PVY+ +P D++ ++++ +
Sbjct  114  QLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDVLLEEVDED  169


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 92.2 bits (230),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 37/138 (27%), Positives = 58/138 (42%), Gaps = 2/138 (1%)

Query  211  VDVVLKYLHAAQRPVILVDACAIRHKVLQEVHDLMEASGLPTFVAPMGKGAVDETHKNYG  270
            ++   + L  A+RPVIL      R    +E+ +L E  G+P     MGKGA  E H  Y 
Sbjct  1    IEKAAELLKKAKRPVILAGGGVRRSGASEELRELAEKLGIPVVTTLMGKGAFPEDHPLYL  60

Query  271  GVYAGDGSNTGVREQVESSDLILSIGAIKSDFNTAGFTYRI-GQLNTIDFHSTYVRVRYS  329
            G   G        E +E +DL+L++GA   D  T G           I        +  +
Sbjct  61   G-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDPAEIGKN  119

Query  330  EYPDINMKGVLRKVIQKL  347
               D+ + G  ++ ++ L
Sbjct  120  YPVDVPIVGDAKETLEAL  137


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 63.4 bits (155),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 16/102 (16%)

Query  421  WGSIGYSVGACQGAALAAKEQGNRRTILFVGDGSIQLTLQEISTMIRNKLNPIIFVICNE  480
             G++GY + A  GA LA     +R  +   GDG  Q+ LQE++T +R  L   + V+ N 
Sbjct  27   LGTMGYGLPAAIGAKLARP---DRPVVAIAGDGGFQMNLQELATAVRYNLPITVVVLNNG  83

Query  481  GYTIERYIHGWE----------ASYNDIQQWDYKSLPVAFGA  512
            GY + R   G +           S   +   D+  L  A+GA
Sbjct  84   GYGMTR---GQQTPFGGGRYSGPSGKILPPVDFAKLAEAYGA  122



Lambda      K        H        a         alpha
   0.319    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 638935852


Query= TCONS_00022575

Length=569
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme...  129     1e-35
CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  92.2    9e-23
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  73.4    5e-16


>CDD:460690 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal 
TPP binding domain.  
Length=169

 Score = 129 bits (326),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 52/176 (30%), Positives = 83/176 (47%), Gaps = 10/176 (6%)

Query  16   VAEYLFRRLHEVGIRSVHGVPGDYNLAALDYLPKC-GLHWVGNCNELNAGYAADGYARVN  74
             AE L   L  +G+ +V GVPG + L  LD L K  G+ +V   +E  A +AADGYAR  
Sbjct  1    GAEALADVLKALGVDTVFGVPGGHILPLLDALAKSPGIRYVLTRHEQGAAFAADGYARAT  60

Query  75   G-ISALITTFGVGELSAINAIAGAYSEFVPIVHIVGQPHTRSQRDGMLLHHTLGNGDYNV  133
            G    ++ T G G  +A+  +A AY + VP++ I GQ        G L            
Sbjct  61   GKPGVVLVTSGPGATNALTGLANAYVDSVPLLVISGQRPRSLVGRGAL-------QQELD  113

Query  134  FARMNAGVSTTVGRLNDTHEVATLIDNAIRECWI-RSRPVYITLPTDMVTKKIEGE  188
               +   V+    R+    E+  ++  A R     R  PVY+ +P D++ ++++ +
Sbjct  114  QLALFRPVTKWAVRVTSADEIPEVLRRAFRAALSGRPGPVYLEIPLDVLLEEVDED  169


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 92.2 bits (230),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 37/138 (27%), Positives = 58/138 (42%), Gaps = 2/138 (1%)

Query  210  VDVVLKYLHAAQRPVILVDACAIRHKVLQEVHDLMEASGLPTFVAPMGKGAVDETHKNYG  269
            ++   + L  A+RPVIL      R    +E+ +L E  G+P     MGKGA  E H  Y 
Sbjct  1    IEKAAELLKKAKRPVILAGGGVRRSGASEELRELAEKLGIPVVTTLMGKGAFPEDHPLYL  60

Query  270  GVYAGDGSNTGVREQVESSDLILSIGAIKSDFNTAGFTYRI-GQLNTIDFHSTYVRVRYS  328
            G   G        E +E +DL+L++GA   D  T G           I        +  +
Sbjct  61   G-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDPAEIGKN  119

Query  329  EYPDINMKGVLRKVIQKL  346
               D+ + G  ++ ++ L
Sbjct  120  YPVDVPIVGDAKETLEAL  137


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 73.4 bits (181),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 35/122 (29%), Positives = 58/122 (48%), Gaps = 20/122 (16%)

Query  420  WGSIGYSVGACQGAALAAKEQGNRRTILFVGDGSIQLTLQEISTMIRNKLNPIIFVICNE  479
             G++GY + A  GA LA     +R  +   GDG  Q+ LQE++T +R  L   + V+ N 
Sbjct  27   LGTMGYGLPAAIGAKLARP---DRPVVAIAGDGGFQMNLQELATAVRYNLPITVVVLNNG  83

Query  480  GYTIERYIHGWE----------ASYNDIQQWDYKSLPVAFGAGKDYKGYRVKTKDDMIKL  529
            GY + R   G +           S   +   D+  L  A+GA    KG RV++ +++ + 
Sbjct  84   GYGMTR---GQQTPFGGGRYSGPSGKILPPVDFAKLAEAYGA----KGARVESPEELEEA  136

Query  530  FE  531
             +
Sbjct  137  LK  138



Lambda      K        H        a         alpha
   0.319    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 712842156


Query= TCONS_00027202

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme...  93.4    2e-23
CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme...  74.5    2e-16


>CDD:425523 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central 
domain.  The central domain of TPP enzymes contains a 2-fold 
Rossman fold.
Length=137

 Score = 93.4 bits (233),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 37/138 (27%), Positives = 58/138 (42%), Gaps = 2/138 (1%)

Query  91   VDVVLKYLHAAQRPVILVDACAIRHKVLQEVHDLMEASGLPTFVAPMGKGAVDETHKNYG  150
            ++   + L  A+RPVIL      R    +E+ +L E  G+P     MGKGA  E H  Y 
Sbjct  1    IEKAAELLKKAKRPVILAGGGVRRSGASEELRELAEKLGIPVVTTLMGKGAFPEDHPLYL  60

Query  151  GVYAGDGSNTGVREQVESSDLILSIGAIKSDFNTAGFTYRI-GQLNTIDFHSTYVRVRYS  209
            G   G        E +E +DL+L++GA   D  T G           I        +  +
Sbjct  61   G-MLGMHGTPAANEALEEADLVLAVGARFDDIRTTGKLPEFAPDAKIIHIDIDPAEIGKN  119

Query  210  EYPDINMKGVLRKVIQKL  227
               D+ + G  ++ ++ L
Sbjct  120  YPVDVPIVGDAKETLEAL  137


>CDD:460689 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal 
TPP binding domain.  
Length=151

 Score = 74.5 bits (184),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 35/122 (29%), Positives = 58/122 (48%), Gaps = 20/122 (16%)

Query  301  WGSIGYSVGACQGAALAAKEQGNRRTILFVGDGSIQLTLQEISTMIRNKLNPIIFVICNE  360
             G++GY + A  GA LA     +R  +   GDG  Q+ LQE++T +R  L   + V+ N 
Sbjct  27   LGTMGYGLPAAIGAKLARP---DRPVVAIAGDGGFQMNLQELATAVRYNLPITVVVLNNG  83

Query  361  GYTIERYIHGWE----------ASYNDIQQWDYKSLPVAFGAGKDYKGYRVKTKDDMIKL  410
            GY + R   G +           S   +   D+  L  A+GA    KG RV++ +++ + 
Sbjct  84   GYGMTR---GQQTPFGGGRYSGPSGKILPPVDFAKLAEAYGA----KGARVESPEELEEA  136

Query  411  FE  412
             +
Sbjct  137  LK  138



Lambda      K        H        a         alpha
   0.318    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00027203

Length=1575
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            160     1e-44
CDD:459660 pfam00069, Pkinase, Protein kinase domain                  148     8e-41


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 160 bits (408),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 125/260 (48%), Gaps = 30/260 (12%)

Query  1323  IIRGQLIGKGTYGRVYLGI---NADNGEVL-AVKQVEINPRLAGQDTDRVKEMVAAMDQE  1378
             +  G+ +G+G +G VY G      +N ++  AVK ++       +  D  +E      +E
Sbjct  1     LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-------EGAD--EEEREDFLEE  51

Query  1379  IDTMQHLEHPNIVQYLG-CERGEFSISIYLEYISGGSIGSCLRKHG-KFEESVVKSLTRQ  1436
                M+ L+HPNIV+ LG C +GE  + I  EY+ GG +   LRKH  K     + S+  Q
Sbjct  52    ASIMKKLDHPNIVKLLGVCTQGE-PLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQ  110

Query  1437  TLSGLAYLHDQGILHRDLKADNILLDLDGTCKISDFGISKKTDDIYGNDSSNSMQGSVFW  1496
                G+ YL  +  +HRDL A N L+  +   KISDFG+S+   D          +  + W
Sbjct  111   IAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  1497  MAPEVIQSQGQGYSAKVDIWSLGCVVLEMFA-GRRPW---SKEEAIGAIFKLGSLSQAPP  1552
             MAPE ++     +++K D+WS G ++ E+F  G +P+   S EE +  +     L Q   
Sbjct  171   MAPESLKD--GKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPEN  228

Query  1553  IPDDVSMTISPAALAFMYDC  1572
              PD++           M  C
Sbjct  229   CPDELYD--------LMKQC  240


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 148 bits (376),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 103/256 (40%), Gaps = 63/256 (25%)

Query  1325  RGQLIGKGTYGRVYLGINADNGEVLAVKQVEINPRLAGQDTDRVKEMVAAMDQEIDTMQH  1384
               + +G G++G VY   + D G+++A+K+++             K+    + +EI  ++ 
Sbjct  3     VLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKK--------EKIKKKKDKNILREIKILKK  54

Query  1385  LEHPNIVQYLGCERGEFSISIYLEYISGGSIGSCLRKHGKFEESVVKSLTRQTLSGLAYL  1444
             L HPNIV+       + ++ + LEY+ GGS+   L + G F E   K + +Q L GL   
Sbjct  55    LNHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE--  112

Query  1445  HDQGILHRDLKADNILLDLDGTCKISDFGISKKTDDIYGNDSS-NSMQGSVFWMAPEVIQ  1503
                                                    + SS  +  G+ ++MAPEV+ 
Sbjct  113   ---------------------------------------SGSSLTTFVGTPWYMAPEVL-  132

Query  1504  SQGQGYSAKVDIWSLGCVVLEMFAGRRPWS----KEEAIGAIFKLGSLSQAPPIPDDVSM  1559
               G  Y  KVD+WSLGC++ E+  G+ P+      E     I +  +  + P        
Sbjct  133   -GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPS-------  184

Query  1560  TISPAALAFMYDCFTV  1575
              +S  A   +      
Sbjct  185   NLSEEAKDLLKKLLKK  200



Lambda      K        H        a         alpha
   0.311    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2002875912


Query= TCONS_00022576

Length=1575
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            160     1e-44
CDD:459660 pfam00069, Pkinase, Protein kinase domain                  148     8e-41


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 160 bits (408),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 125/260 (48%), Gaps = 30/260 (12%)

Query  1323  IIRGQLIGKGTYGRVYLGI---NADNGEVL-AVKQVEINPRLAGQDTDRVKEMVAAMDQE  1378
             +  G+ +G+G +G VY G      +N ++  AVK ++       +  D  +E      +E
Sbjct  1     LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-------EGAD--EEEREDFLEE  51

Query  1379  IDTMQHLEHPNIVQYLG-CERGEFSISIYLEYISGGSIGSCLRKHG-KFEESVVKSLTRQ  1436
                M+ L+HPNIV+ LG C +GE  + I  EY+ GG +   LRKH  K     + S+  Q
Sbjct  52    ASIMKKLDHPNIVKLLGVCTQGE-PLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQ  110

Query  1437  TLSGLAYLHDQGILHRDLKADNILLDLDGTCKISDFGISKKTDDIYGNDSSNSMQGSVFW  1496
                G+ YL  +  +HRDL A N L+  +   KISDFG+S+   D          +  + W
Sbjct  111   IAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  1497  MAPEVIQSQGQGYSAKVDIWSLGCVVLEMFA-GRRPW---SKEEAIGAIFKLGSLSQAPP  1552
             MAPE ++     +++K D+WS G ++ E+F  G +P+   S EE +  +     L Q   
Sbjct  171   MAPESLKD--GKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPEN  228

Query  1553  IPDDVSMTISPAALAFMYDC  1572
              PD++           M  C
Sbjct  229   CPDELYD--------LMKQC  240


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 148 bits (376),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 103/256 (40%), Gaps = 63/256 (25%)

Query  1325  RGQLIGKGTYGRVYLGINADNGEVLAVKQVEINPRLAGQDTDRVKEMVAAMDQEIDTMQH  1384
               + +G G++G VY   + D G+++A+K+++             K+    + +EI  ++ 
Sbjct  3     VLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKK--------EKIKKKKDKNILREIKILKK  54

Query  1385  LEHPNIVQYLGCERGEFSISIYLEYISGGSIGSCLRKHGKFEESVVKSLTRQTLSGLAYL  1444
             L HPNIV+       + ++ + LEY+ GGS+   L + G F E   K + +Q L GL   
Sbjct  55    LNHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE--  112

Query  1445  HDQGILHRDLKADNILLDLDGTCKISDFGISKKTDDIYGNDSS-NSMQGSVFWMAPEVIQ  1503
                                                    + SS  +  G+ ++MAPEV+ 
Sbjct  113   ---------------------------------------SGSSLTTFVGTPWYMAPEVL-  132

Query  1504  SQGQGYSAKVDIWSLGCVVLEMFAGRRPWS----KEEAIGAIFKLGSLSQAPPIPDDVSM  1559
               G  Y  KVD+WSLGC++ E+  G+ P+      E     I +  +  + P        
Sbjct  133   -GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPS-------  184

Query  1560  TISPAALAFMYDCFTV  1575
              +S  A   +      
Sbjct  185   NLSEEAKDLLKKLLKK  200



Lambda      K        H        a         alpha
   0.311    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2002875912


Query= TCONS_00022578

Length=1614
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            171     2e-48
CDD:459660 pfam00069, Pkinase, Protein kinase domain                  168     9e-48


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 171 bits (436),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 84/277 (30%), Positives = 133/277 (48%), Gaps = 30/277 (11%)

Query  1323  IIRGQLIGKGTYGRVYLGI---NADNGEVL-AVKQVEINPRLAGQDTDRVKEMVAAMDQE  1378
             +  G+ +G+G +G VY G      +N ++  AVK ++       +  D  +E      +E
Sbjct  1     LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-------EGAD--EEEREDFLEE  51

Query  1379  IDTMQHLEHPNIVQYLG-CERGEFSISIYLEYISGGSIGSCLRKHG-KFEESVVKSLTRQ  1436
                M+ L+HPNIV+ LG C +GE  + I  EY+ GG +   LRKH  K     + S+  Q
Sbjct  52    ASIMKKLDHPNIVKLLGVCTQGE-PLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQ  110

Query  1437  TLSGLAYLHDQGILHRDLKADNILLDLDGTCKISDFGISKKTDDIYGNDSSNSMQGSVFW  1496
                G+ YL  +  +HRDL A N L+  +   KISDFG+S+   D          +  + W
Sbjct  111   IAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  1497  MAPEVIQSQGQGYSAKVDIWSLGCVVLEMFA-GRRPW---SKEEAIGAIFKLGSLSQAPP  1552
             MAPE ++     +++K D+WS G ++ E+F  G +P+   S EE +  +     L Q   
Sbjct  171   MAPESLKD--GKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPEN  228

Query  1553  IPDDVSMTISPAALAFMYDCFTVDSSERPTAQTLLTR  1589
              PD++           M  C+  D  +RPT   L+  
Sbjct  229   CPDELYD--------LMKQCWAYDPEDRPTFSELVED  257


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 168 bits (428),  Expect = 9e-48, Method: Composition-based stats.
 Identities = 67/273 (25%), Positives = 114/273 (42%), Gaps = 64/273 (23%)

Query  1325  RGQLIGKGTYGRVYLGINADNGEVLAVKQVEINPRLAGQDTDRVKEMVAAMDQEIDTMQH  1384
               + +G G++G VY   + D G+++A+K+++             K+    + +EI  ++ 
Sbjct  3     VLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKK--------EKIKKKKDKNILREIKILKK  54

Query  1385  LEHPNIVQYLGCERGEFSISIYLEYISGGSIGSCLRKHGKFEESVVKSLTRQTLSGLAYL  1444
             L HPNIV+       + ++ + LEY+ GGS+   L + G F E   K + +Q L GL   
Sbjct  55    LNHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE--  112

Query  1445  HDQGILHRDLKADNILLDLDGTCKISDFGISKKTDDIYGNDSS-NSMQGSVFWMAPEVIQ  1503
                                                    + SS  +  G+ ++MAPEV+ 
Sbjct  113   ---------------------------------------SGSSLTTFVGTPWYMAPEVLG  133

Query  1504  SQGQGYSAKVDIWSLGCVVLEMFAGRRPWS----KEEAIGAIFKLGSLSQAPPIPDDVSM  1559
               G  Y  KVD+WSLGC++ E+  G+ P+      E     I +  +  + P        
Sbjct  134   --GNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPS-------  184

Query  1560  TISPAALAFMYDCFTVDSSERPTAQTLLTRHPF  1592
              +S  A   +      D S+R TA   L +HP+
Sbjct  185   NLSEEAKDLLKKLLKKDPSKRLTATQAL-QHPW  216



Lambda      K        H        a         alpha
   0.311    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0743    0.140     1.90     42.6     43.6 

Effective search space used: 2055797430


Query= TCONS_00022577

Length=1614
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            171     2e-48
CDD:459660 pfam00069, Pkinase, Protein kinase domain                  168     9e-48


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 171 bits (436),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 84/277 (30%), Positives = 133/277 (48%), Gaps = 30/277 (11%)

Query  1323  IIRGQLIGKGTYGRVYLGI---NADNGEVL-AVKQVEINPRLAGQDTDRVKEMVAAMDQE  1378
             +  G+ +G+G +G VY G      +N ++  AVK ++       +  D  +E      +E
Sbjct  1     LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-------EGAD--EEEREDFLEE  51

Query  1379  IDTMQHLEHPNIVQYLG-CERGEFSISIYLEYISGGSIGSCLRKHG-KFEESVVKSLTRQ  1436
                M+ L+HPNIV+ LG C +GE  + I  EY+ GG +   LRKH  K     + S+  Q
Sbjct  52    ASIMKKLDHPNIVKLLGVCTQGE-PLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQ  110

Query  1437  TLSGLAYLHDQGILHRDLKADNILLDLDGTCKISDFGISKKTDDIYGNDSSNSMQGSVFW  1496
                G+ YL  +  +HRDL A N L+  +   KISDFG+S+   D          +  + W
Sbjct  111   IAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  1497  MAPEVIQSQGQGYSAKVDIWSLGCVVLEMFA-GRRPW---SKEEAIGAIFKLGSLSQAPP  1552
             MAPE ++     +++K D+WS G ++ E+F  G +P+   S EE +  +     L Q   
Sbjct  171   MAPESLKD--GKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPEN  228

Query  1553  IPDDVSMTISPAALAFMYDCFTVDSSERPTAQTLLTR  1589
              PD++           M  C+  D  +RPT   L+  
Sbjct  229   CPDELYD--------LMKQCWAYDPEDRPTFSELVED  257


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 168 bits (428),  Expect = 9e-48, Method: Composition-based stats.
 Identities = 67/273 (25%), Positives = 114/273 (42%), Gaps = 64/273 (23%)

Query  1325  RGQLIGKGTYGRVYLGINADNGEVLAVKQVEINPRLAGQDTDRVKEMVAAMDQEIDTMQH  1384
               + +G G++G VY   + D G+++A+K+++             K+    + +EI  ++ 
Sbjct  3     VLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKK--------EKIKKKKDKNILREIKILKK  54

Query  1385  LEHPNIVQYLGCERGEFSISIYLEYISGGSIGSCLRKHGKFEESVVKSLTRQTLSGLAYL  1444
             L HPNIV+       + ++ + LEY+ GGS+   L + G F E   K + +Q L GL   
Sbjct  55    LNHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE--  112

Query  1445  HDQGILHRDLKADNILLDLDGTCKISDFGISKKTDDIYGNDSS-NSMQGSVFWMAPEVIQ  1503
                                                    + SS  +  G+ ++MAPEV+ 
Sbjct  113   ---------------------------------------SGSSLTTFVGTPWYMAPEVLG  133

Query  1504  SQGQGYSAKVDIWSLGCVVLEMFAGRRPWS----KEEAIGAIFKLGSLSQAPPIPDDVSM  1559
               G  Y  KVD+WSLGC++ E+  G+ P+      E     I +  +  + P        
Sbjct  134   --GNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPS-------  184

Query  1560  TISPAALAFMYDCFTVDSSERPTAQTLLTRHPF  1592
              +S  A   +      D S+R TA   L +HP+
Sbjct  185   NLSEEAKDLLKKLLKKDPSKRLTATQAL-QHPW  216



Lambda      K        H        a         alpha
   0.311    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2055797430


Query= TCONS_00022579

Length=1617
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            166     1e-46
CDD:459660 pfam00069, Pkinase, Protein kinase domain                  163     7e-46


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 166 bits (424),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 84/280 (30%), Positives = 133/280 (48%), Gaps = 33/280 (12%)

Query  1323  IIRGQLIGKGTYGRVYLGI---NADNGEVL-AVKQVEINPRLAGQDTDRVKEMVAAMDQE  1378
             +  G+ +G+G +G VY G      +N ++  AVK ++       +  D  +E      +E
Sbjct  1     LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-------EGAD--EEEREDFLEE  51

Query  1379  IDTMQHLEHPNIVQYLG-CERGEFSISIYLEYISGGSIGSCLRKHG-KFEESVVKSLTRQ  1436
                M+ L+HPNIV+ LG C +GE  + I  EY+ GG +   LRKH  K     + S+  Q
Sbjct  52    ASIMKKLDHPNIVKLLGVCTQGE-PLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQ  110

Query  1437  TLSGLAYLHDQGILHRDLKADNILLDLDGTCKISDFGISKKTDDIYGNDSSNSMQGSVFW  1496
                G+ YL  +  +HRDL A N L+  +   KISDFG+S+   D          +  + W
Sbjct  111   IAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  1497  MAPEVIQSQGQGYSAKVDIWSLGCVVLEMFA-GRRPW---SKEEAIGAIFKLGSLSQAPP  1552
             MAPE ++     +++K D+WS G ++ E+F  G +P+   S EE +  +     L Q   
Sbjct  171   MAPESLKD--GKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPEN  228

Query  1553  IPDDVSMTISPAALAFMYDCFTVPYRDSSERPTAQTLLTR  1592
              PD++           M  C+     D  +RPT   L+  
Sbjct  229   CPDELYD--------LMKQCWA---YDPEDRPTFSELVED  257


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 163 bits (414),  Expect = 7e-46, Method: Composition-based stats.
 Identities = 67/276 (24%), Positives = 114/276 (41%), Gaps = 67/276 (24%)

Query  1325  RGQLIGKGTYGRVYLGINADNGEVLAVKQVEINPRLAGQDTDRVKEMVAAMDQEIDTMQH  1384
               + +G G++G VY   + D G+++A+K+++             K+    + +EI  ++ 
Sbjct  3     VLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKK--------EKIKKKKDKNILREIKILKK  54

Query  1385  LEHPNIVQYLGCERGEFSISIYLEYISGGSIGSCLRKHGKFEESVVKSLTRQTLSGLAYL  1444
             L HPNIV+       + ++ + LEY+ GGS+   L + G F E   K + +Q L GL   
Sbjct  55    LNHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLE--  112

Query  1445  HDQGILHRDLKADNILLDLDGTCKISDFGISKKTDDIYGNDSS-NSMQGSVFWMAPEVIQ  1503
                                                    + SS  +  G+ ++MAPEV+ 
Sbjct  113   ---------------------------------------SGSSLTTFVGTPWYMAPEVL-  132

Query  1504  SQGQGYSAKVDIWSLGCVVLEMFAGRRPWS----KEEAIGAIFKLGSLSQAPPIPDDVSM  1559
               G  Y  KVD+WSLGC++ E+  G+ P+      E     I +  +  + P        
Sbjct  133   -GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPS-------  184

Query  1560  TISPAALAFMYDCFTVPYRDSSERPTAQTLLTRHPF  1595
              +S  A   +         D S+R TA   L +HP+
Sbjct  185   NLSEEAKDLLKKLLKK---DPSKRLTATQAL-QHPW  216



Lambda      K        H        a         alpha
   0.311    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2059868316


Query= TCONS_00027204

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  96.5    2e-26


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 96.5 bits (241),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 50/105 (48%), Gaps = 14/105 (13%)

Query  3    GSVFWMAPEVIQSQGQGYSAKVDIWSLGCVVLEMFAGRRPWS----KEEAIGAIFKLGSL  58
            G+ ++MAPEV+   G  Y  KVD+WSLGC++ E+  G+ P+      E     I +  + 
Sbjct  122  GTPWYMAPEVLG--GNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAF  179

Query  59   SQAPPIPDDVSMTISPAALAFMYDCFTVDSSERPTAQTLLTRHPF  103
             + P         +S  A   +      D S+R TA   L +HP+
Sbjct  180  PELPS-------NLSEEAKDLLKKLLKKDPSKRLTATQAL-QHPW  216



Lambda      K        H        a         alpha
   0.321    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00022580

Length=580
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463914 pfam13540, RCC1_2, Regulator of chromosome condensatio...  57.0    2e-11


>CDD:463914 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) 
repeat.  
Length=30

 Score = 57.0 bits (139),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 20/30 (67%), Positives = 23/30 (77%), Gaps = 0/30 (0%)

Query  318  VTEVATGDYHSLALTKDGNVYAFGDNSFGQ  347
            V  VA GD H+LALT DG VY +GDNS+GQ
Sbjct  1    VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ  30



Lambda      K        H        a         alpha
   0.314    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 729280864


Query= TCONS_00022581

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463914 pfam13540, RCC1_2, Regulator of chromosome condensatio...  55.9    3e-11


>CDD:463914 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) 
repeat.  
Length=30

 Score = 55.9 bits (136),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 20/30 (67%), Positives = 23/30 (77%), Gaps = 0/30 (0%)

Query  125  VTEVATGDYHSLALTKDGNVYAFGDNSFGQ  154
            V  VA GD H+LALT DG VY +GDNS+GQ
Sbjct  1    VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ  30



Lambda      K        H        a         alpha
   0.314    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00022582

Length=699


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 893722740


Query= TCONS_00022583

Length=699


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 893722740


Query= TCONS_00027205

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395219 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarbox...  272     7e-87


>CDD:395219 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved 
domain.  
Length=373

 Score = 272 bits (697),  Expect = 7e-87, Method: Composition-based stats.
 Identities = 115/399 (29%), Positives = 172/399 (43%), Gaps = 38/399 (10%)

Query  71   PEELRDILQLSLPEKGTRQEGLIEVLRKVLKYSVNTWHQGFLDKLY-ASTNAPGVASELI  129
            P  L+ +L L+ P     +  +   +R+ L   V TWH            + P +  +++
Sbjct  1    PGYLKPLLPLAAPIIPEPELQIDGDIRRNLMPGVTTWHSPHFHAYMPTGNSYPSLLGDML  60

Query  130  LAALNTNVHVYQVSPALTIIEKFTGEKLASLFGL----NGPRAGGISVQGGSASNTTSIV  185
              A+N N   ++ SPA T +E      L  + GL     G   GG+   G S SN  +++
Sbjct  61   TDAINCNGFTWESSPACTELENVVMNWLGEMLGLPAEFLGQEGGGVLQPGSSESNLLALL  120

Query  186  IARNNLYPDTKKNGNGDY------KFVVFTSDHGHYSIEKAAQMLGLGSSSVWVVPVDKQ  239
             AR       K  G          K V +TSD  H SIEKAA   G+    +  +P D  
Sbjct  121  AARTKWIKRMKAAGKPADSSGILAKLVAYTSDQAHSSIEKAALYGGVK---LREIPSDDN  177

Query  240  GRMIPEELEKLVRKALQENRTPFYVNATAGTTVMGSFDPFNEIAAICQKYNLWFHVDGSW  299
            G+M   +LEK + +  +    PF+V AT GTT  G+FD   E+  IC K+NLW HVD ++
Sbjct  178  GKMRGMDLEKAIEEDKENGLIPFFVVATLGTTGSGAFDDLQELGDICAKHNLWLHVDAAY  237

Query  300  GGSFVFSKRQKHKLAGVDKANSIAINPHKMLGVPVTCSFLLAADIRQFHRANTLPAGYLF  359
            GGS       +H L G+++A+SI  NPHK + V + CS +   D     +A      YL 
Sbjct  238  GGSAFICPEFRHWLFGIERADSITFNPHKWMLVLLDCSAVWVKDKEALQQAFQFNPLYLG  297

Query  360  HNNDTEPQPNGDLGTSENELSVDSPEVWDLADLTLQCGRRADSLKLFLGWTYYGTEGYEQ  419
            H +                        +D     +   RR   LKL+      G EG + 
Sbjct  298  HTDSA----------------------YDTGHKQIPLSRRFRILKLWFVIRSLGVEGLQN  335

Query  420  QIDTACDIAAHLATLVSESPNFILISENPPPCLQVCFYY  458
            QI    ++A +L  L+ +   F + +E       VCF  
Sbjct  336  QIRRHVELAQYLEALIRKDGRFEICAE--VGLGLVCFRL  372



Lambda      K        H        a         alpha
   0.316    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00022585

Length=833
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase do...  218     1e-66
CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus. This...  187     2e-55
CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C ...  86.5    4e-21


>CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain.  
This domain belongs to a more diverse superfamily, including 
pfam01331 and pfam01653.
Length=203

 Score = 218 bits (558),  Expect = 1e-66, Method: Composition-based stats.
 Identities = 97/247 (39%), Positives = 131/247 (53%), Gaps = 46/247 (19%)

Query  413  PMLGSITRDLSEMLTKLQGRDFSCEYKYDGQRAQVHCDEKGKVSIFSRHLENMTEKYPDL  472
            PML    + + E L K  G  F  EYKYDG+RAQ+H D   +V +FSR+LEN+T  YP++
Sbjct  1    PMLAKSFKSIEEALKKF-GGAFIAEYKYDGERAQIHKD-GDEVKLFSRNLENITRHYPEI  58

Query  473  VSLVSQIRGESVSSFILEGEVVAVDNKTGGLQTFQVLTNRAKKNVEIGAI--NINVCLFA  530
            V  + +       SFIL+GE+VAVD +TG +  FQVL +R KK V++  +   + VCLF 
Sbjct  59   VEALKEAFKPDEKSFILDGEIVAVDPETGEILPFQVLADRKKKKVDVEELAEKVPVCLFV  118

Query  531  FDLMYLNGEPLLDRPFRERRELLRSLFVEIPNRFTWVKSLDATSADSETVLEFFKSALEN  590
            FDL+YL+GE L D P RERR+LL  +F EIP R    +S+     D E   EF + A+  
Sbjct  119  FDLLYLDGEDLTDLPLRERRKLLEEIFKEIPGRIQLAESIVTK--DVEEAQEFLEEAISE  176

Query  591  KCEGIMVKVLDNAPKTSLEQNKEASTSNGMDVTSGEPLENAGKGGRRKALLSTYEPDKRL  650
              EG++VK  D                                        STYEP KR 
Sbjct  177  GLEGLVVKDPD----------------------------------------STYEPGKRG  196

Query  651  ESWLKVK  657
            ++WLK+K
Sbjct  197  KNWLKIK  203


>CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus.  This region 
is found in many but not all ATP-dependent DNA ligase enzymes 
(EC:6.5.1.1). It is thought to be involved in DNA binding 
and in catalysis. In human DNA ligase I, and in Saccharomyces 
cerevisiae, this region was necessary for catalysis, and 
separated from the amino terminus by targeting elements. In 
vaccinia virus this region was not essential for catalysis, 
but deletion decreases the affinity for nicked DNA and decreased 
the rate of strand joining at a step subsequent to enzyme-adenylate 
formation.
Length=174

 Score = 187 bits (476),  Expect = 2e-55, Method: Composition-based stats.
 Identities = 69/180 (38%), Positives = 105/180 (58%), Gaps = 7/180 (4%)

Query  155  SYALLTRAFV-LANATTSRIRIVDTLVNFLRVLIEGDPSSVLPAVWLATNSISPPYDELE  213
             ++LL   F  +   T+SR+     L NF R +I   P  + PA+ L    + P YD  E
Sbjct  1    PFSLLAELFEKIEATTSSRLEKTAILANFFRSVIGAGPEDLYPALRL----LLPDYDGRE  56

Query  214  LGLGGSAISKALKKVYGLNPYGLKSLYDKYGDAGDVAFEAKKRQSFTLMKPKPLTIKGVY  273
             G+G   ++KA+ +  GL+   +K  Y K GD G+VA E   ++S TL KP PLTI  V 
Sbjct  57   YGIGEKLLAKAIAEALGLSKDSIKDAYRKAGDLGEVAEEVLSKRS-TLFKPSPLTIDEVN  115

Query  274  QSLRKIATSKGSGSQESKQRIVEKLLQDTRGAEESRYIVRTLVQNLRIGAVKTTMLIALA  333
            + L K+A + G GSQ+ K +I++KLL+     EE++Y++R ++ +LRIG  + T+L ALA
Sbjct  116  ELLDKLAAASGKGSQDEKIKILKKLLKRAT-PEEAKYLIRIILGDLRIGLGEKTVLDALA  174


>CDD:398383 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C terminal 
region.  This region is found in many but not all ATP-dependent 
DNA ligase enzymes (EC:6.5.1.1). It is thought to constitute 
part of the catalytic core of ATP dependent DNA ligase.
Length=94

 Score = 86.5 bits (215),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 49/114 (43%), Gaps = 22/114 (19%)

Query  681  KAKWWSPILMAVRNPETGSLEAVTKCMSGFTDKFYQANKDKYAEGTPNVISRPAYVEY--  738
            +   +  +L+ V +   G L  V K  +GFTD   +  +++     P    +P + E   
Sbjct  1    RRGGFGSLLLGVYD--DGRLVYVGKVGTGFTDADLEELRERL---KPLERKKPPFAEPPP  55

Query  739  YGEPDVWFEPQEVWEMAFADITLSPTYTAAIGLVSDERGLSLRFPRFLRVRDDK  792
                 VW EP+ V E+ FA+ T S                 LRFPRF  +R+DK
Sbjct  56   EARGAVWVEPELVAEVEFAEWTRSG---------------RLRFPRFKGLREDK  94



Lambda      K        H        a         alpha
   0.314    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1059409332


Query= TCONS_00022586

Length=767
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432283 pfam12044, Metallopep, Putative peptidase family. This...  675     0.0  


>CDD:432283 pfam12044, Metallopep, Putative peptidase family.  This family 
of proteins is functionally uncharacterized. However, it does 
contain an HEXXH motif characteristic of metallopeptidases. 
This protein is found mainly in fungi. Proteins in this 
family are typically between 625 to 773 amino acids in length.
Length=426

 Score = 675 bits (1745),  Expect = 0.0, Method: Composition-based stats.
 Identities = 247/440 (56%), Positives = 300/440 (68%), Gaps = 22/440 (5%)

Query  122  APRIISISDNAWVHQKVLLIYGQIGDPRQHPLDGNVTVYHHQD-GFPSIAWPVTSSHFKA  180
            +  + ++ DN  V+Q V+L++G+ G+P     DG VTV H  +  FP + WPV  S FKA
Sbjct  1    SIEVFNLQDNEEVYQPVVLVHGRCGEP-CSQCDGTVTVQHPDNFSFPPLTWPVHDSEFKA  59

Query  181  LVHLAPGPNRLRFDFVSTKLSTGSAYPAIHSSWISINYLPLVNAPPLQLVILLGKDSDGT  240
            LVHL+PG NRL F+      +T       HSS +++NY PL+  PP+ L ILL KDS GT
Sbjct  60   LVHLSPGENRLTFE------TTNC----NHSSELTLNYTPLLQNPPVHLCILLAKDSPGT  109

Query  241  FDAVPERQQREGNGLETAIRKFRTAAYLWQAFTAEQMFRNNFGRRCFRFEEEWQTGTLSR  300
            FDA P R Q EGNGL+ AI+K R AA L QAFTAEQM RN FGRR FRFEEEW T TLS+
Sbjct  110  FDAPPARIQGEGNGLDLAIKKLRMAARLMQAFTAEQMRRNGFGRRTFRFEEEWTTDTLSQ  169

Query  301  RDATDGLMRNEAKVHVIRTDKTVAELRALDIAQQHGPATRKDELFNIAKEAVKNYFRPKE  360
               T   MR+EAKVH+IR+DKTVAELR  ++AQQ+  A  +  LF IA +A+K Y  P  
Sbjct  170  ESPT---MRSEAKVHIIRSDKTVAELRDPNLAQQNPLAKDEGGLFQIAADALKKYGHPLP  226

Query  361  GQKQYVSVLLLDSHWDKTSKTITGHAALGSSGDNIKMAIFGSHCLQSYPSCLEEVVEAFS  420
            G +  V+VL LD+HWD   K ITGHAALG  G +IK+AIFGSH L S+PS LEEVV AF 
Sbjct  227  GTRVKVAVLFLDTHWDGIRKLITGHAALGGGGGDIKLAIFGSHGLYSWPSSLEEVVPAFL  286

Query  421  DCTRTNTDFVANDCGEAGSSWEAANIGIGAHLHEVGHLFGCPHQESGIMLRDYVRLNRSF  480
            D TR +T  VANDC E G+ WE ANI +GA LHE+GHLFGCPHQE G+MLRDY  LNRSF
Sbjct  287  DATRVDTAEVANDCNECGTYWECANITLGAFLHEIGHLFGCPHQEDGVMLRDYDTLNRSF  346

Query  481  TTREPFSTRTKTQGLKLCLPQDECGWHRLDALRFRFHPCFRLPSDAPVSSDD-------S  533
            TTREP+STRTK++G +  LP+DEC WHRLDALRFR+HP F LP D   S  D        
Sbjct  347  TTREPYSTRTKSKGKRPILPKDECTWHRLDALRFRYHPSFALPGDTFSSPSDLNNSKYSR  406

Query  534  VQVWPVENGKILFTAPSGIA  553
              ++PV NG +   + SGI 
Sbjct  407  PTLYPVGNGTVKIKSTSGIY  426



Lambda      K        H        a         alpha
   0.317    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 979317296


Query= TCONS_00022587

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432283 pfam12044, Metallopep, Putative peptidase family. This...  468     9e-165


>CDD:432283 pfam12044, Metallopep, Putative peptidase family.  This family 
of proteins is functionally uncharacterized. However, it does 
contain an HEXXH motif characteristic of metallopeptidases. 
This protein is found mainly in fungi. Proteins in this 
family are typically between 625 to 773 amino acids in length.
Length=426

 Score = 468 bits (1207),  Expect = 9e-165, Method: Composition-based stats.
 Identities = 169/284 (60%), Positives = 200/284 (70%), Gaps = 10/284 (4%)

Query  1    MFRNNFGRRCFRFEEEWQTGTLSRRDATDGLMRNEAKVHVIRTDKTVAELRALDIAQQHG  60
            M RN FGRR FRFEEEW T TLS+   T   MR+EAKVH+IR+DKTVAELR  ++AQQ+ 
Sbjct  146  MRRNGFGRRTFRFEEEWTTDTLSQESPT---MRSEAKVHIIRSDKTVAELRDPNLAQQNP  202

Query  61   PATRKDELFNIAKEAVKNYFRPKEGQKQYVSVLLLDSHWDKTSKTITGHAALGSSGDNIK  120
             A  +  LF IA +A+K Y  P  G +  V+VL LD+HWD   K ITGHAALG  G +IK
Sbjct  203  LAKDEGGLFQIAADALKKYGHPLPGTRVKVAVLFLDTHWDGIRKLITGHAALGGGGGDIK  262

Query  121  MAIFGSHCLQSYPSCLEEVVEAFSDCTRTNTDFVANDCGEAGSSWEAANIGIGAHLHEVG  180
            +AIFGSH L S+PS LEEVV AF D TR +T  VANDC E G+ WE ANI +GA LHE+G
Sbjct  263  LAIFGSHGLYSWPSSLEEVVPAFLDATRVDTAEVANDCNECGTYWECANITLGAFLHEIG  322

Query  181  HLFGCPHQESGIMLRDYVRLNRSFTTREPFSTRTKTQGLKLCLPQDECGWHRLDALRFRF  240
            HLFGCPHQE G+MLRDY  LNRSFTTREP+STRTK++G +  LP+DEC WHRLDALRFR+
Sbjct  323  HLFGCPHQEDGVMLRDYDTLNRSFTTREPYSTRTKSKGKRPILPKDECTWHRLDALRFRY  382

Query  241  HPCFRLPSDAPVSSDD-------SVQVWPVENGKILFTAPSGIA  277
            HP F LP D   S  D          ++PV NG +   + SGI 
Sbjct  383  HPSFALPGDTFSSPSDLNNSKYSRPTLYPVGNGTVKIKSTSGIY  426



Lambda      K        H        a         alpha
   0.318    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00022588

Length=721
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432283 pfam12044, Metallopep, Putative peptidase family. This...  674     0.0  


>CDD:432283 pfam12044, Metallopep, Putative peptidase family.  This family 
of proteins is functionally uncharacterized. However, it does 
contain an HEXXH motif characteristic of metallopeptidases. 
This protein is found mainly in fungi. Proteins in this 
family are typically between 625 to 773 amino acids in length.
Length=426

 Score = 674 bits (1741),  Expect = 0.0, Method: Composition-based stats.
 Identities = 247/440 (56%), Positives = 300/440 (68%), Gaps = 22/440 (5%)

Query  122  APRIISISDNAWVHQKVLLIYGQIGDPRQHPLDGNVTVYHHQD-GFPSIAWPVTSSHFKA  180
            +  + ++ DN  V+Q V+L++G+ G+P     DG VTV H  +  FP + WPV  S FKA
Sbjct  1    SIEVFNLQDNEEVYQPVVLVHGRCGEP-CSQCDGTVTVQHPDNFSFPPLTWPVHDSEFKA  59

Query  181  LVHLAPGPNRLRFDFVSTKLSTGSAYPAIHSSWISINYLPLVNAPPLQLVILLGKDSDGT  240
            LVHL+PG NRL F+      +T       HSS +++NY PL+  PP+ L ILL KDS GT
Sbjct  60   LVHLSPGENRLTFE------TTNC----NHSSELTLNYTPLLQNPPVHLCILLAKDSPGT  109

Query  241  FDAVPERQQREGNGLETAIRKFRTAAYLWQAFTAEQMFRNNFGRRCFRFEEEWQTGTLSR  300
            FDA P R Q EGNGL+ AI+K R AA L QAFTAEQM RN FGRR FRFEEEW T TLS+
Sbjct  110  FDAPPARIQGEGNGLDLAIKKLRMAARLMQAFTAEQMRRNGFGRRTFRFEEEWTTDTLSQ  169

Query  301  RDATDGLMRNEAKVHVIRTDKTVAELRALDIAQQHGPATRKDELFNIAKEAVKNYFRPKE  360
               T   MR+EAKVH+IR+DKTVAELR  ++AQQ+  A  +  LF IA +A+K Y  P  
Sbjct  170  ESPT---MRSEAKVHIIRSDKTVAELRDPNLAQQNPLAKDEGGLFQIAADALKKYGHPLP  226

Query  361  GQKQYVSVLLLDSHWDKTSKTITGHAALGSSGDNIKMAIFGSHCLQSYPSCLEEVVEAFS  420
            G +  V+VL LD+HWD   K ITGHAALG  G +IK+AIFGSH L S+PS LEEVV AF 
Sbjct  227  GTRVKVAVLFLDTHWDGIRKLITGHAALGGGGGDIKLAIFGSHGLYSWPSSLEEVVPAFL  286

Query  421  DCTRTNTDFVANDCGEAGSSWEAANIGIGAHLHEVGHLFGCPHQESGIMLRDYVRLNRSF  480
            D TR +T  VANDC E G+ WE ANI +GA LHE+GHLFGCPHQE G+MLRDY  LNRSF
Sbjct  287  DATRVDTAEVANDCNECGTYWECANITLGAFLHEIGHLFGCPHQEDGVMLRDYDTLNRSF  346

Query  481  TTREPFSTRTKTQGLKLCLPQDECGWHRLDALRFRFHPCFRLPSDAPVSSDD-------S  533
            TTREP+STRTK++G +  LP+DEC WHRLDALRFR+HP F LP D   S  D        
Sbjct  347  TTREPYSTRTKSKGKRPILPKDECTWHRLDALRFRYHPSFALPGDTFSSPSDLNNSKYSR  406

Query  534  VQVWPVENGKILFTAPSGIA  553
              ++PV NG +   + SGI 
Sbjct  407  PTLYPVGNGTVKIKSTSGIY  426



Lambda      K        H        a         alpha
   0.316    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 912380304


Query= TCONS_00027206

Length=786
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432283 pfam12044, Metallopep, Putative peptidase family. This...  678     0.0  


>CDD:432283 pfam12044, Metallopep, Putative peptidase family.  This family 
of proteins is functionally uncharacterized. However, it does 
contain an HEXXH motif characteristic of metallopeptidases. 
This protein is found mainly in fungi. Proteins in this 
family are typically between 625 to 773 amino acids in length.
Length=426

 Score = 678 bits (1751),  Expect = 0.0, Method: Composition-based stats.
 Identities = 247/440 (56%), Positives = 300/440 (68%), Gaps = 22/440 (5%)

Query  122  APRIISISDNAWVHQKVLLIYGQIGDPRQHPLDGNVTVYHHQD-GFPSIAWPVTSSHFKA  180
            +  + ++ DN  V+Q V+L++G+ G+P     DG VTV H  +  FP + WPV  S FKA
Sbjct  1    SIEVFNLQDNEEVYQPVVLVHGRCGEP-CSQCDGTVTVQHPDNFSFPPLTWPVHDSEFKA  59

Query  181  LVHLAPGPNRLRFDFVSTKLSTGSAYPAIHSSWISINYLPLVNAPPLQLVILLGKDSDGT  240
            LVHL+PG NRL F+      +T       HSS +++NY PL+  PP+ L ILL KDS GT
Sbjct  60   LVHLSPGENRLTFE------TTNC----NHSSELTLNYTPLLQNPPVHLCILLAKDSPGT  109

Query  241  FDAVPERQQREGNGLETAIRKFRTAAYLWQAFTAEQMFRNNFGRRCFRFEEEWQTGTLSR  300
            FDA P R Q EGNGL+ AI+K R AA L QAFTAEQM RN FGRR FRFEEEW T TLS+
Sbjct  110  FDAPPARIQGEGNGLDLAIKKLRMAARLMQAFTAEQMRRNGFGRRTFRFEEEWTTDTLSQ  169

Query  301  RDATDGLMRNEAKVHVIRTDKTVAELRALDIAQQHGPATRKDELFNIAKEAVKNYFRPKE  360
               T   MR+EAKVH+IR+DKTVAELR  ++AQQ+  A  +  LF IA +A+K Y  P  
Sbjct  170  ESPT---MRSEAKVHIIRSDKTVAELRDPNLAQQNPLAKDEGGLFQIAADALKKYGHPLP  226

Query  361  GQKQYVSVLLLDSHWDKTSKTITGHAALGSSGDNIKMAIFGSHCLQSYPSCLEEVVEAFS  420
            G +  V+VL LD+HWD   K ITGHAALG  G +IK+AIFGSH L S+PS LEEVV AF 
Sbjct  227  GTRVKVAVLFLDTHWDGIRKLITGHAALGGGGGDIKLAIFGSHGLYSWPSSLEEVVPAFL  286

Query  421  DCTRTNTDFVANDCGEAGSSWEAANIGIGAHLHEVGHLFGCPHQESGIMLRDYVRLNRSF  480
            D TR +T  VANDC E G+ WE ANI +GA LHE+GHLFGCPHQE G+MLRDY  LNRSF
Sbjct  287  DATRVDTAEVANDCNECGTYWECANITLGAFLHEIGHLFGCPHQEDGVMLRDYDTLNRSF  346

Query  481  TTREPFSTRTKTQGLKLCLPQDECGWHRLDALRFRFHPCFRLPSDAPVSSDD-------S  533
            TTREP+STRTK++G +  LP+DEC WHRLDALRFR+HP F LP D   S  D        
Sbjct  347  TTREPYSTRTKSKGKRPILPKDECTWHRLDALRFRYHPSFALPGDTFSSPSDLNNSKYSR  406

Query  534  VQVWPVENGKILFTAPSGIA  553
              ++PV NG +   + SGI 
Sbjct  407  PTLYPVGNGTVKIKSTSGIY  426



Lambda      K        H        a         alpha
   0.317    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1006965184


Query= TCONS_00027207

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432283 pfam12044, Metallopep, Putative peptidase family. This...  660     0.0  


>CDD:432283 pfam12044, Metallopep, Putative peptidase family.  This family 
of proteins is functionally uncharacterized. However, it does 
contain an HEXXH motif characteristic of metallopeptidases. 
This protein is found mainly in fungi. Proteins in this 
family are typically between 625 to 773 amino acids in length.
Length=426

 Score = 660 bits (1704),  Expect = 0.0, Method: Composition-based stats.
 Identities = 244/426 (57%), Positives = 292/426 (69%), Gaps = 22/426 (5%)

Query  4    QKVLLIYGQIGDPRQHPLDGNVTVYHHQD-GFPSIAWPVTSSHFKALVHLAPGPNRLRFD  62
            Q V+L++G+ G+P     DG VTV H  +  FP + WPV  S FKALVHL+PG NRL F+
Sbjct  15   QPVVLVHGRCGEP-CSQCDGTVTVQHPDNFSFPPLTWPVHDSEFKALVHLSPGENRLTFE  73

Query  63   FVSTKLSTGSAYPAIHSSWISINYLPLVNAPPLQLVILLGKDSDGTFDAVPERQQREGNG  122
                  +T       HSS +++NY PL+  PP+ L ILL KDS GTFDA P R Q EGNG
Sbjct  74   ------TTNC----NHSSELTLNYTPLLQNPPVHLCILLAKDSPGTFDAPPARIQGEGNG  123

Query  123  LETAIRKFRTAAYLWQAFTAEQMFRNNFGRRCFRFEEEWQTGTLSRRDATDGLMRNEAKV  182
            L+ AI+K R AA L QAFTAEQM RN FGRR FRFEEEW T TLS+   T   MR+EAKV
Sbjct  124  LDLAIKKLRMAARLMQAFTAEQMRRNGFGRRTFRFEEEWTTDTLSQESPT---MRSEAKV  180

Query  183  HVIRTDKTVAELRALDIAQQHGPATRKDELFNIAKEAVKNYFRPKEGQKQYVSVLLLDSH  242
            H+IR+DKTVAELR  ++AQQ+  A  +  LF IA +A+K Y  P  G +  V+VL LD+H
Sbjct  181  HIIRSDKTVAELRDPNLAQQNPLAKDEGGLFQIAADALKKYGHPLPGTRVKVAVLFLDTH  240

Query  243  WDKTSKTITGHAALGSSGDNIKMAIFGSHCLQSYPSCLEEVVEAFSDCTRTNTDFVANDC  302
            WD   K ITGHAALG  G +IK+AIFGSH L S+PS LEEVV AF D TR +T  VANDC
Sbjct  241  WDGIRKLITGHAALGGGGGDIKLAIFGSHGLYSWPSSLEEVVPAFLDATRVDTAEVANDC  300

Query  303  GEAGSSWEAANIGIGAHLHEVGHLFGCPHQESGIMLRDYVRLNRSFTTREPFSTRTKTQG  362
             E G+ WE ANI +GA LHE+GHLFGCPHQE G+MLRDY  LNRSFTTREP+STRTK++G
Sbjct  301  NECGTYWECANITLGAFLHEIGHLFGCPHQEDGVMLRDYDTLNRSFTTREPYSTRTKSKG  360

Query  363  LKLCLPQDECGWHRLDALRFRFHPCFRLPSDAPVSSDD-------SVQVWPVENGKILFT  415
             +  LP+DEC WHRLDALRFR+HP F LP D   S  D          ++PV NG +   
Sbjct  361  KRPILPKDECTWHRLDALRFRYHPSFALPGDTFSSPSDLNNSKYSRPTLYPVGNGTVKIK  420

Query  416  APSGIA  421
            + SGI 
Sbjct  421  STSGIY  426



Lambda      K        H        a         alpha
   0.319    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00027208

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432283 pfam12044, Metallopep, Putative peptidase family. This...  471     2e-164


>CDD:432283 pfam12044, Metallopep, Putative peptidase family.  This family 
of proteins is functionally uncharacterized. However, it does 
contain an HEXXH motif characteristic of metallopeptidases. 
This protein is found mainly in fungi. Proteins in this 
family are typically between 625 to 773 amino acids in length.
Length=426

 Score = 471 bits (1213),  Expect = 2e-164, Method: Composition-based stats.
 Identities = 169/284 (60%), Positives = 200/284 (70%), Gaps = 10/284 (4%)

Query  1    MFRNNFGRRCFRFEEEWQTGTLSRRDATDGLMRNEAKVHVIRTDKTVAELRALDIAQQHG  60
            M RN FGRR FRFEEEW T TLS+   T   MR+EAKVH+IR+DKTVAELR  ++AQQ+ 
Sbjct  146  MRRNGFGRRTFRFEEEWTTDTLSQESPT---MRSEAKVHIIRSDKTVAELRDPNLAQQNP  202

Query  61   PATRKDELFNIAKEAVKNYFRPKEGQKQYVSVLLLDSHWDKTSKTITGHAALGSSGDNIK  120
             A  +  LF IA +A+K Y  P  G +  V+VL LD+HWD   K ITGHAALG  G +IK
Sbjct  203  LAKDEGGLFQIAADALKKYGHPLPGTRVKVAVLFLDTHWDGIRKLITGHAALGGGGGDIK  262

Query  121  MAIFGSHCLQSYPSCLEEVVEAFSDCTRTNTDFVANDCGEAGSSWEAANIGIGAHLHEVG  180
            +AIFGSH L S+PS LEEVV AF D TR +T  VANDC E G+ WE ANI +GA LHE+G
Sbjct  263  LAIFGSHGLYSWPSSLEEVVPAFLDATRVDTAEVANDCNECGTYWECANITLGAFLHEIG  322

Query  181  HLFGCPHQESGIMLRDYVRLNRSFTTREPFSTRTKTQGLKLCLPQDECGWHRLDALRFRF  240
            HLFGCPHQE G+MLRDY  LNRSFTTREP+STRTK++G +  LP+DEC WHRLDALRFR+
Sbjct  323  HLFGCPHQEDGVMLRDYDTLNRSFTTREPYSTRTKSKGKRPILPKDECTWHRLDALRFRY  382

Query  241  HPCFRLPSDAPVSSDD-------SVQVWPVENGKILFTAPSGIA  277
            HP F LP D   S  D          ++PV NG +   + SGI 
Sbjct  383  HPSFALPGDTFSSPSDLNNSKYSRPTLYPVGNGTVKIKSTSGIY  426



Lambda      K        H        a         alpha
   0.319    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 635907720


Query= TCONS_00027209

Length=865
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432283 pfam12044, Metallopep, Putative peptidase family. This...  675     0.0  


>CDD:432283 pfam12044, Metallopep, Putative peptidase family.  This family 
of proteins is functionally uncharacterized. However, it does 
contain an HEXXH motif characteristic of metallopeptidases. 
This protein is found mainly in fungi. Proteins in this 
family are typically between 625 to 773 amino acids in length.
Length=426

 Score = 675 bits (1745),  Expect = 0.0, Method: Composition-based stats.
 Identities = 247/440 (56%), Positives = 300/440 (68%), Gaps = 22/440 (5%)

Query  122  APRIISISDNAWVHQKVLLIYGQIGDPRQHPLDGNVTVYHHQD-GFPSIAWPVTSSHFKA  180
            +  + ++ DN  V+Q V+L++G+ G+P     DG VTV H  +  FP + WPV  S FKA
Sbjct  1    SIEVFNLQDNEEVYQPVVLVHGRCGEP-CSQCDGTVTVQHPDNFSFPPLTWPVHDSEFKA  59

Query  181  LVHLAPGPNRLRFDFVSTKLSTGSAYPAIHSSWISINYLPLVNAPPLQLVILLGKDSDGT  240
            LVHL+PG NRL F+      +T       HSS +++NY PL+  PP+ L ILL KDS GT
Sbjct  60   LVHLSPGENRLTFE------TTNC----NHSSELTLNYTPLLQNPPVHLCILLAKDSPGT  109

Query  241  FDAVPERQQREGNGLETAIRKFRTAAYLWQAFTAEQMFRNNFGRRCFRFEEEWQTGTLSR  300
            FDA P R Q EGNGL+ AI+K R AA L QAFTAEQM RN FGRR FRFEEEW T TLS+
Sbjct  110  FDAPPARIQGEGNGLDLAIKKLRMAARLMQAFTAEQMRRNGFGRRTFRFEEEWTTDTLSQ  169

Query  301  RDATDGLMRNEAKVHVIRTDKTVAELRALDIAQQHGPATRKDELFNIAKEAVKNYFRPKE  360
               T   MR+EAKVH+IR+DKTVAELR  ++AQQ+  A  +  LF IA +A+K Y  P  
Sbjct  170  ESPT---MRSEAKVHIIRSDKTVAELRDPNLAQQNPLAKDEGGLFQIAADALKKYGHPLP  226

Query  361  GQKQYVSVLLLDSHWDKTSKTITGHAALGSSGDNIKMAIFGSHCLQSYPSCLEEVVEAFS  420
            G +  V+VL LD+HWD   K ITGHAALG  G +IK+AIFGSH L S+PS LEEVV AF 
Sbjct  227  GTRVKVAVLFLDTHWDGIRKLITGHAALGGGGGDIKLAIFGSHGLYSWPSSLEEVVPAFL  286

Query  421  DCTRTNTDFVANDCGEAGSSWEAANIGIGAHLHEVGHLFGCPHQESGIMLRDYVRLNRSF  480
            D TR +T  VANDC E G+ WE ANI +GA LHE+GHLFGCPHQE G+MLRDY  LNRSF
Sbjct  287  DATRVDTAEVANDCNECGTYWECANITLGAFLHEIGHLFGCPHQEDGVMLRDYDTLNRSF  346

Query  481  TTREPFSTRTKTQGLKLCLPQDECGWHRLDALRFRFHPCFRLPSDAPVSSDD-------S  533
            TTREP+STRTK++G +  LP+DEC WHRLDALRFR+HP F LP D   S  D        
Sbjct  347  TTREPYSTRTKSKGKRPILPKDECTWHRLDALRFRYHPSFALPGDTFSSPSDLNNSKYSR  406

Query  534  VQVWPVENGKILFTAPSGIA  553
              ++PV NG +   + SGI 
Sbjct  407  PTLYPVGNGTVKIKSTSGIY  426



Lambda      K        H        a         alpha
   0.319    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1105345780


Query= TCONS_00022589

Length=787
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432283 pfam12044, Metallopep, Putative peptidase family. This...  676     0.0  


>CDD:432283 pfam12044, Metallopep, Putative peptidase family.  This family 
of proteins is functionally uncharacterized. However, it does 
contain an HEXXH motif characteristic of metallopeptidases. 
This protein is found mainly in fungi. Proteins in this 
family are typically between 625 to 773 amino acids in length.
Length=426

 Score = 676 bits (1747),  Expect = 0.0, Method: Composition-based stats.
 Identities = 247/440 (56%), Positives = 300/440 (68%), Gaps = 22/440 (5%)

Query  122  APRIISISDNAWVHQKVLLIYGQIGDPRQHPLDGNVTVYHHQD-GFPSIAWPVTSSHFKA  180
            +  + ++ DN  V+Q V+L++G+ G+P     DG VTV H  +  FP + WPV  S FKA
Sbjct  1    SIEVFNLQDNEEVYQPVVLVHGRCGEP-CSQCDGTVTVQHPDNFSFPPLTWPVHDSEFKA  59

Query  181  LVHLAPGPNRLRFDFVSTKLSTGSAYPAIHSSWISINYLPLVNAPPLQLVILLGKDSDGT  240
            LVHL+PG NRL F+      +T       HSS +++NY PL+  PP+ L ILL KDS GT
Sbjct  60   LVHLSPGENRLTFE------TTNC----NHSSELTLNYTPLLQNPPVHLCILLAKDSPGT  109

Query  241  FDAVPERQQREGNGLETAIRKFRTAAYLWQAFTAEQMFRNNFGRRCFRFEEEWQTGTLSR  300
            FDA P R Q EGNGL+ AI+K R AA L QAFTAEQM RN FGRR FRFEEEW T TLS+
Sbjct  110  FDAPPARIQGEGNGLDLAIKKLRMAARLMQAFTAEQMRRNGFGRRTFRFEEEWTTDTLSQ  169

Query  301  RDATDGLMRNEAKVHVIRTDKTVAELRALDIAQQHGPATRKDELFNIAKEAVKNYFRPKE  360
               T   MR+EAKVH+IR+DKTVAELR  ++AQQ+  A  +  LF IA +A+K Y  P  
Sbjct  170  ESPT---MRSEAKVHIIRSDKTVAELRDPNLAQQNPLAKDEGGLFQIAADALKKYGHPLP  226

Query  361  GQKQYVSVLLLDSHWDKTSKTITGHAALGSSGDNIKMAIFGSHCLQSYPSCLEEVVEAFS  420
            G +  V+VL LD+HWD   K ITGHAALG  G +IK+AIFGSH L S+PS LEEVV AF 
Sbjct  227  GTRVKVAVLFLDTHWDGIRKLITGHAALGGGGGDIKLAIFGSHGLYSWPSSLEEVVPAFL  286

Query  421  DCTRTNTDFVANDCGEAGSSWEAANIGIGAHLHEVGHLFGCPHQESGIMLRDYVRLNRSF  480
            D TR +T  VANDC E G+ WE ANI +GA LHE+GHLFGCPHQE G+MLRDY  LNRSF
Sbjct  287  DATRVDTAEVANDCNECGTYWECANITLGAFLHEIGHLFGCPHQEDGVMLRDYDTLNRSF  346

Query  481  TTREPFSTRTKTQGLKLCLPQDECGWHRLDALRFRFHPCFRLPSDAPVSSDD-------S  533
            TTREP+STRTK++G +  LP+DEC WHRLDALRFR+HP F LP D   S  D        
Sbjct  347  TTREPYSTRTKSKGKRPILPKDECTWHRLDALRFRYHPSFALPGDTFSSPSDLNNSKYSR  406

Query  534  VQVWPVENGKILFTAPSGIA  553
              ++PV NG +   + SGI 
Sbjct  407  PTLYPVGNGTVKIKSTSGIY  426



Lambda      K        H        a         alpha
   0.317    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1008420336


Query= TCONS_00027210

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432283 pfam12044, Metallopep, Putative peptidase family. This...  471     2e-164


>CDD:432283 pfam12044, Metallopep, Putative peptidase family.  This family 
of proteins is functionally uncharacterized. However, it does 
contain an HEXXH motif characteristic of metallopeptidases. 
This protein is found mainly in fungi. Proteins in this 
family are typically between 625 to 773 amino acids in length.
Length=426

 Score = 471 bits (1213),  Expect = 2e-164, Method: Composition-based stats.
 Identities = 169/284 (60%), Positives = 200/284 (70%), Gaps = 10/284 (4%)

Query  1    MFRNNFGRRCFRFEEEWQTGTLSRRDATDGLMRNEAKVHVIRTDKTVAELRALDIAQQHG  60
            M RN FGRR FRFEEEW T TLS+   T   MR+EAKVH+IR+DKTVAELR  ++AQQ+ 
Sbjct  146  MRRNGFGRRTFRFEEEWTTDTLSQESPT---MRSEAKVHIIRSDKTVAELRDPNLAQQNP  202

Query  61   PATRKDELFNIAKEAVKNYFRPKEGQKQYVSVLLLDSHWDKTSKTITGHAALGSSGDNIK  120
             A  +  LF IA +A+K Y  P  G +  V+VL LD+HWD   K ITGHAALG  G +IK
Sbjct  203  LAKDEGGLFQIAADALKKYGHPLPGTRVKVAVLFLDTHWDGIRKLITGHAALGGGGGDIK  262

Query  121  MAIFGSHCLQSYPSCLEEVVEAFSDCTRTNTDFVANDCGEAGSSWEAANIGIGAHLHEVG  180
            +AIFGSH L S+PS LEEVV AF D TR +T  VANDC E G+ WE ANI +GA LHE+G
Sbjct  263  LAIFGSHGLYSWPSSLEEVVPAFLDATRVDTAEVANDCNECGTYWECANITLGAFLHEIG  322

Query  181  HLFGCPHQESGIMLRDYVRLNRSFTTREPFSTRTKTQGLKLCLPQDECGWHRLDALRFRF  240
            HLFGCPHQE G+MLRDY  LNRSFTTREP+STRTK++G +  LP+DEC WHRLDALRFR+
Sbjct  323  HLFGCPHQEDGVMLRDYDTLNRSFTTREPYSTRTKSKGKRPILPKDECTWHRLDALRFRY  382

Query  241  HPCFRLPSDAPVSSDD-------SVQVWPVENGKILFTAPSGIA  277
            HP F LP D   S  D          ++PV NG +   + SGI 
Sbjct  383  HPSFALPGDTFSSPSDLNNSKYSRPTLYPVGNGTVKIKSTSGIY  426



Lambda      K        H        a         alpha
   0.319    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 635907720


Query= TCONS_00027211

Length=707
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461338 pfam04516, CP2, CP2 transcription factor. This family ...  347     1e-116


>CDD:461338 pfam04516, CP2, CP2 transcription factor.  This family represents 
a conserved region in the CP2 transcription factor family.
Length=214

 Score = 347 bits (892),  Expect = 1e-116, Method: Composition-based stats.
 Identities = 118/230 (51%), Positives = 144/230 (63%), Gaps = 17/230 (7%)

Query  153  FATSAAHDLSDTPGSSENFRYHVTLRAPTAMIKHQNEIPISYLNKGQAYSVSVIDSNPPP  212
             + S A +     GS+ENFR+H TL APTAMIK  NEIP++YLNKGQAYS+S+ID+    
Sbjct  1    NSPSLAAEQYAVSGSTENFRFHYTLEAPTAMIKKVNEIPMTYLNKGQAYSISLIDTGMNK  60

Query  213  MTGHPV-RYRTFIRVSFQEEEQRSKPAACWQLWKEGRGSSEAYQRGGKLQAVEYVDPTQG  271
             +  P  + R+ +RV F E + R +   CWQLWKEGR ++          AV  VDP  G
Sbjct  61   CSVLPGSKLRSVVRVVFHERKLRVEELKCWQLWKEGRPTA----------AVRIVDPLYG  110

Query  272  GIEDHKQRQIQLESASFDGFCVTWTANPATGVPECAISVRFNFLSTDFSHSKGVKGIPVR  331
            G E+ K  Q+ +ES SF+ F  TW         EC I +R N LSTDFSHSKGVKG+P+R
Sbjct  111  GYEEQKNTQVNIESISFNAFSFTW-----NPTEECKIFIRVNCLSTDFSHSKGVKGVPLR  165

Query  332  LCAKTEMIGPESADSREAEVCYCKVKLFRDHGAERKLSNDVAHVKKTIEK  381
            L  KT   GP SA    A   YC+VK+FRD GAERKLSNDVA VKK I K
Sbjct  166  LQIKTYSYGPGSARPA-AHRAYCQVKVFRDKGAERKLSNDVAKVKKRIGK  214



Lambda      K        H        a         alpha
   0.315    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905521060


Query= TCONS_00027212

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461338 pfam04516, CP2, CP2 transcription factor. This family ...  345     2e-116


>CDD:461338 pfam04516, CP2, CP2 transcription factor.  This family represents 
a conserved region in the CP2 transcription factor family.
Length=214

 Score = 345 bits (887),  Expect = 2e-116, Method: Composition-based stats.
 Identities = 118/230 (51%), Positives = 144/230 (63%), Gaps = 17/230 (7%)

Query  205  FATSAAHDLSDTPGSSENFRYHVTLRAPTAMIKHQNEIPISYLNKGQAYSVSVIDSNPPP  264
             + S A +     GS+ENFR+H TL APTAMIK  NEIP++YLNKGQAYS+S+ID+    
Sbjct  1    NSPSLAAEQYAVSGSTENFRFHYTLEAPTAMIKKVNEIPMTYLNKGQAYSISLIDTGMNK  60

Query  265  MTGHPV-RYRTFIRVSFQEEEQRSKPAACWQLWKEGRGSSEAYQRGGKLQAVEYVDPTQG  323
             +  P  + R+ +RV F E + R +   CWQLWKEGR ++          AV  VDP  G
Sbjct  61   CSVLPGSKLRSVVRVVFHERKLRVEELKCWQLWKEGRPTA----------AVRIVDPLYG  110

Query  324  GIEDHKQRQIQLESASFDGFCVTWTANPATGVPECAISVRFNFLSTDFSHSKGVKGIPVR  383
            G E+ K  Q+ +ES SF+ F  TW         EC I +R N LSTDFSHSKGVKG+P+R
Sbjct  111  GYEEQKNTQVNIESISFNAFSFTW-----NPTEECKIFIRVNCLSTDFSHSKGVKGVPLR  165

Query  384  LCAKTEMIGPESADSREAEVCYCKVKLFRDHGAERKLSNDVAHVKKTIEK  433
            L  KT   GP SA    A   YC+VK+FRD GAERKLSNDVA VKK I K
Sbjct  166  LQIKTYSYGPGSARPA-AHRAYCQVKVFRDKGAERKLSNDVAKVKKRIGK  214



Lambda      K        H        a         alpha
   0.314    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 846529460


Query= TCONS_00027214

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461338 pfam04516, CP2, CP2 transcription factor. This family ...  345     2e-116


>CDD:461338 pfam04516, CP2, CP2 transcription factor.  This family represents 
a conserved region in the CP2 transcription factor family.
Length=214

 Score = 345 bits (887),  Expect = 2e-116, Method: Composition-based stats.
 Identities = 118/230 (51%), Positives = 144/230 (63%), Gaps = 17/230 (7%)

Query  205  FATSAAHDLSDTPGSSENFRYHVTLRAPTAMIKHQNEIPISYLNKGQAYSVSVIDSNPPP  264
             + S A +     GS+ENFR+H TL APTAMIK  NEIP++YLNKGQAYS+S+ID+    
Sbjct  1    NSPSLAAEQYAVSGSTENFRFHYTLEAPTAMIKKVNEIPMTYLNKGQAYSISLIDTGMNK  60

Query  265  MTGHPV-RYRTFIRVSFQEEEQRSKPAACWQLWKEGRGSSEAYQRGGKLQAVEYVDPTQG  323
             +  P  + R+ +RV F E + R +   CWQLWKEGR ++          AV  VDP  G
Sbjct  61   CSVLPGSKLRSVVRVVFHERKLRVEELKCWQLWKEGRPTA----------AVRIVDPLYG  110

Query  324  GIEDHKQRQIQLESASFDGFCVTWTANPATGVPECAISVRFNFLSTDFSHSKGVKGIPVR  383
            G E+ K  Q+ +ES SF+ F  TW         EC I +R N LSTDFSHSKGVKG+P+R
Sbjct  111  GYEEQKNTQVNIESISFNAFSFTW-----NPTEECKIFIRVNCLSTDFSHSKGVKGVPLR  165

Query  384  LCAKTEMIGPESADSREAEVCYCKVKLFRDHGAERKLSNDVAHVKKTIEK  433
            L  KT   GP SA    A   YC+VK+FRD GAERKLSNDVA VKK I K
Sbjct  166  LQIKTYSYGPGSARPA-AHRAYCQVKVFRDKGAERKLSNDVAKVKKRIGK  214



Lambda      K        H        a         alpha
   0.314    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 846529460


Query= TCONS_00027213

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461338 pfam04516, CP2, CP2 transcription factor. This family ...  345     2e-116


>CDD:461338 pfam04516, CP2, CP2 transcription factor.  This family represents 
a conserved region in the CP2 transcription factor family.
Length=214

 Score = 345 bits (887),  Expect = 2e-116, Method: Composition-based stats.
 Identities = 118/230 (51%), Positives = 144/230 (63%), Gaps = 17/230 (7%)

Query  205  FATSAAHDLSDTPGSSENFRYHVTLRAPTAMIKHQNEIPISYLNKGQAYSVSVIDSNPPP  264
             + S A +     GS+ENFR+H TL APTAMIK  NEIP++YLNKGQAYS+S+ID+    
Sbjct  1    NSPSLAAEQYAVSGSTENFRFHYTLEAPTAMIKKVNEIPMTYLNKGQAYSISLIDTGMNK  60

Query  265  MTGHPV-RYRTFIRVSFQEEEQRSKPAACWQLWKEGRGSSEAYQRGGKLQAVEYVDPTQG  323
             +  P  + R+ +RV F E + R +   CWQLWKEGR ++          AV  VDP  G
Sbjct  61   CSVLPGSKLRSVVRVVFHERKLRVEELKCWQLWKEGRPTA----------AVRIVDPLYG  110

Query  324  GIEDHKQRQIQLESASFDGFCVTWTANPATGVPECAISVRFNFLSTDFSHSKGVKGIPVR  383
            G E+ K  Q+ +ES SF+ F  TW         EC I +R N LSTDFSHSKGVKG+P+R
Sbjct  111  GYEEQKNTQVNIESISFNAFSFTW-----NPTEECKIFIRVNCLSTDFSHSKGVKGVPLR  165

Query  384  LCAKTEMIGPESADSREAEVCYCKVKLFRDHGAERKLSNDVAHVKKTIEK  433
            L  KT   GP SA    A   YC+VK+FRD GAERKLSNDVA VKK I K
Sbjct  166  LQIKTYSYGPGSARPA-AHRAYCQVKVFRDKGAERKLSNDVAKVKKRIGK  214



Lambda      K        H        a         alpha
   0.314    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 846529460


Query= TCONS_00027215

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461338 pfam04516, CP2, CP2 transcription factor. This family ...  346     2e-117


>CDD:461338 pfam04516, CP2, CP2 transcription factor.  This family represents 
a conserved region in the CP2 transcription factor family.
Length=214

 Score = 346 bits (889),  Expect = 2e-117, Method: Composition-based stats.
 Identities = 118/230 (51%), Positives = 144/230 (63%), Gaps = 17/230 (7%)

Query  153  FATSAAHDLSDTPGSSENFRYHVTLRAPTAMIKHQNEIPISYLNKGQAYSVSVIDSNPPP  212
             + S A +     GS+ENFR+H TL APTAMIK  NEIP++YLNKGQAYS+S+ID+    
Sbjct  1    NSPSLAAEQYAVSGSTENFRFHYTLEAPTAMIKKVNEIPMTYLNKGQAYSISLIDTGMNK  60

Query  213  MTGHPV-RYRTFIRVSFQEEEQRSKPAACWQLWKEGRGSSEAYQRGGKLQAVEYVDPTQG  271
             +  P  + R+ +RV F E + R +   CWQLWKEGR ++          AV  VDP  G
Sbjct  61   CSVLPGSKLRSVVRVVFHERKLRVEELKCWQLWKEGRPTA----------AVRIVDPLYG  110

Query  272  GIEDHKQRQIQLESASFDGFCVTWTANPATGVPECAISVRFNFLSTDFSHSKGVKGIPVR  331
            G E+ K  Q+ +ES SF+ F  TW         EC I +R N LSTDFSHSKGVKG+P+R
Sbjct  111  GYEEQKNTQVNIESISFNAFSFTW-----NPTEECKIFIRVNCLSTDFSHSKGVKGVPLR  165

Query  332  LCAKTEMIGPESADSREAEVCYCKVKLFRDHGAERKLSNDVAHVKKTIEK  381
            L  KT   GP SA    A   YC+VK+FRD GAERKLSNDVA VKK I K
Sbjct  166  LQIKTYSYGPGSARPA-AHRAYCQVKVFRDKGAERKLSNDVAKVKKRIGK  214



Lambda      K        H        a         alpha
   0.314    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 781585844


Query= TCONS_00022591

Length=707
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461338 pfam04516, CP2, CP2 transcription factor. This family ...  347     1e-116


>CDD:461338 pfam04516, CP2, CP2 transcription factor.  This family represents 
a conserved region in the CP2 transcription factor family.
Length=214

 Score = 347 bits (892),  Expect = 1e-116, Method: Composition-based stats.
 Identities = 118/230 (51%), Positives = 144/230 (63%), Gaps = 17/230 (7%)

Query  153  FATSAAHDLSDTPGSSENFRYHVTLRAPTAMIKHQNEIPISYLNKGQAYSVSVIDSNPPP  212
             + S A +     GS+ENFR+H TL APTAMIK  NEIP++YLNKGQAYS+S+ID+    
Sbjct  1    NSPSLAAEQYAVSGSTENFRFHYTLEAPTAMIKKVNEIPMTYLNKGQAYSISLIDTGMNK  60

Query  213  MTGHPV-RYRTFIRVSFQEEEQRSKPAACWQLWKEGRGSSEAYQRGGKLQAVEYVDPTQG  271
             +  P  + R+ +RV F E + R +   CWQLWKEGR ++          AV  VDP  G
Sbjct  61   CSVLPGSKLRSVVRVVFHERKLRVEELKCWQLWKEGRPTA----------AVRIVDPLYG  110

Query  272  GIEDHKQRQIQLESASFDGFCVTWTANPATGVPECAISVRFNFLSTDFSHSKGVKGIPVR  331
            G E+ K  Q+ +ES SF+ F  TW         EC I +R N LSTDFSHSKGVKG+P+R
Sbjct  111  GYEEQKNTQVNIESISFNAFSFTW-----NPTEECKIFIRVNCLSTDFSHSKGVKGVPLR  165

Query  332  LCAKTEMIGPESADSREAEVCYCKVKLFRDHGAERKLSNDVAHVKKTIEK  381
            L  KT   GP SA    A   YC+VK+FRD GAERKLSNDVA VKK I K
Sbjct  166  LQIKTYSYGPGSARPA-AHRAYCQVKVFRDKGAERKLSNDVAKVKKRIGK  214



Lambda      K        H        a         alpha
   0.315    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905521060


Query= TCONS_00022590

Length=759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461338 pfam04516, CP2, CP2 transcription factor. This family ...  346     8e-116


>CDD:461338 pfam04516, CP2, CP2 transcription factor.  This family represents 
a conserved region in the CP2 transcription factor family.
Length=214

 Score = 346 bits (890),  Expect = 8e-116, Method: Composition-based stats.
 Identities = 118/230 (51%), Positives = 144/230 (63%), Gaps = 17/230 (7%)

Query  205  FATSAAHDLSDTPGSSENFRYHVTLRAPTAMIKHQNEIPISYLNKGQAYSVSVIDSNPPP  264
             + S A +     GS+ENFR+H TL APTAMIK  NEIP++YLNKGQAYS+S+ID+    
Sbjct  1    NSPSLAAEQYAVSGSTENFRFHYTLEAPTAMIKKVNEIPMTYLNKGQAYSISLIDTGMNK  60

Query  265  MTGHPV-RYRTFIRVSFQEEEQRSKPAACWQLWKEGRGSSEAYQRGGKLQAVEYVDPTQG  323
             +  P  + R+ +RV F E + R +   CWQLWKEGR ++          AV  VDP  G
Sbjct  61   CSVLPGSKLRSVVRVVFHERKLRVEELKCWQLWKEGRPTA----------AVRIVDPLYG  110

Query  324  GIEDHKQRQIQLESASFDGFCVTWTANPATGVPECAISVRFNFLSTDFSHSKGVKGIPVR  383
            G E+ K  Q+ +ES SF+ F  TW         EC I +R N LSTDFSHSKGVKG+P+R
Sbjct  111  GYEEQKNTQVNIESISFNAFSFTW-----NPTEECKIFIRVNCLSTDFSHSKGVKGVPLR  165

Query  384  LCAKTEMIGPESADSREAEVCYCKVKLFRDHGAERKLSNDVAHVKKTIEK  433
            L  KT   GP SA    A   YC+VK+FRD GAERKLSNDVA VKK I K
Sbjct  166  LQIKTYSYGPGSARPA-AHRAYCQVKVFRDKGAERKLSNDVAKVKKRIGK  214



Lambda      K        H        a         alpha
   0.315    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 967676080


Query= TCONS_00022592

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461338 pfam04516, CP2, CP2 transcription factor. This family ...  301     6e-101


>CDD:461338 pfam04516, CP2, CP2 transcription factor.  This family represents 
a conserved region in the CP2 transcription factor family.
Length=214

 Score = 301 bits (772),  Expect = 6e-101, Method: Composition-based stats.
 Identities = 103/200 (52%), Positives = 125/200 (63%), Gaps = 17/200 (9%)

Query  1    MIKHQNEIPISYLNKGQAYSVSVIDSNPPPMTGHPV-RYRTFIRVSFQEEEQRSKPAACW  59
            MIK  NEIP++YLNKGQAYS+S+ID+     +  P  + R+ +RV F E + R +   CW
Sbjct  31   MIKKVNEIPMTYLNKGQAYSISLIDTGMNKCSVLPGSKLRSVVRVVFHERKLRVEELKCW  90

Query  60   QLWKEGRGSSEAYQRGGKLQAVEYVDPTQGGIEDHKQRQIQLESASFDGFCVTWTANPAT  119
            QLWKEGR ++          AV  VDP  GG E+ K  Q+ +ES SF+ F  TW      
Sbjct  91   QLWKEGRPTA----------AVRIVDPLYGGYEEQKNTQVNIESISFNAFSFTWN-----  135

Query  120  GVPECAISVRFNFLSTDFSHSKGVKGIPVRLCAKTEMIGPESADSREAEVCYCKVKLFRD  179
               EC I +R N LSTDFSHSKGVKG+P+RL  KT   GP SA    A   YC+VK+FRD
Sbjct  136  PTEECKIFIRVNCLSTDFSHSKGVKGVPLRLQIKTYSYGPGSARPA-AHRAYCQVKVFRD  194

Query  180  HGAERKLSNDVAHVKKTIEK  199
             GAERKLSNDVA VKK I K
Sbjct  195  KGAERKLSNDVAKVKKRIGK  214



Lambda      K        H        a         alpha
   0.315    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00022593

Length=759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461338 pfam04516, CP2, CP2 transcription factor. This family ...  346     8e-116


>CDD:461338 pfam04516, CP2, CP2 transcription factor.  This family represents 
a conserved region in the CP2 transcription factor family.
Length=214

 Score = 346 bits (890),  Expect = 8e-116, Method: Composition-based stats.
 Identities = 118/230 (51%), Positives = 144/230 (63%), Gaps = 17/230 (7%)

Query  205  FATSAAHDLSDTPGSSENFRYHVTLRAPTAMIKHQNEIPISYLNKGQAYSVSVIDSNPPP  264
             + S A +     GS+ENFR+H TL APTAMIK  NEIP++YLNKGQAYS+S+ID+    
Sbjct  1    NSPSLAAEQYAVSGSTENFRFHYTLEAPTAMIKKVNEIPMTYLNKGQAYSISLIDTGMNK  60

Query  265  MTGHPV-RYRTFIRVSFQEEEQRSKPAACWQLWKEGRGSSEAYQRGGKLQAVEYVDPTQG  323
             +  P  + R+ +RV F E + R +   CWQLWKEGR ++          AV  VDP  G
Sbjct  61   CSVLPGSKLRSVVRVVFHERKLRVEELKCWQLWKEGRPTA----------AVRIVDPLYG  110

Query  324  GIEDHKQRQIQLESASFDGFCVTWTANPATGVPECAISVRFNFLSTDFSHSKGVKGIPVR  383
            G E+ K  Q+ +ES SF+ F  TW         EC I +R N LSTDFSHSKGVKG+P+R
Sbjct  111  GYEEQKNTQVNIESISFNAFSFTW-----NPTEECKIFIRVNCLSTDFSHSKGVKGVPLR  165

Query  384  LCAKTEMIGPESADSREAEVCYCKVKLFRDHGAERKLSNDVAHVKKTIEK  433
            L  KT   GP SA    A   YC+VK+FRD GAERKLSNDVA VKK I K
Sbjct  166  LQIKTYSYGPGSARPA-AHRAYCQVKVFRDKGAERKLSNDVAKVKKRIGK  214



Lambda      K        H        a         alpha
   0.315    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 967676080


Query= TCONS_00027216

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461338 pfam04516, CP2, CP2 transcription factor. This family ...  345     2e-116


>CDD:461338 pfam04516, CP2, CP2 transcription factor.  This family represents 
a conserved region in the CP2 transcription factor family.
Length=214

 Score = 345 bits (886),  Expect = 2e-116, Method: Composition-based stats.
 Identities = 118/230 (51%), Positives = 144/230 (63%), Gaps = 17/230 (7%)

Query  205  FATSAAHDLSDTPGSSENFRYHVTLRAPTAMIKHQNEIPISYLNKGQAYSVSVIDSNPPP  264
             + S A +     GS+ENFR+H TL APTAMIK  NEIP++YLNKGQAYS+S+ID+    
Sbjct  1    NSPSLAAEQYAVSGSTENFRFHYTLEAPTAMIKKVNEIPMTYLNKGQAYSISLIDTGMNK  60

Query  265  MTGHPV-RYRTFIRVSFQEEEQRSKPAACWQLWKEGRGSSEAYQRGGKLQAVEYVDPTQG  323
             +  P  + R+ +RV F E + R +   CWQLWKEGR ++          AV  VDP  G
Sbjct  61   CSVLPGSKLRSVVRVVFHERKLRVEELKCWQLWKEGRPTA----------AVRIVDPLYG  110

Query  324  GIEDHKQRQIQLESASFDGFCVTWTANPATGVPECAISVRFNFLSTDFSHSKGVKGIPVR  383
            G E+ K  Q+ +ES SF+ F  TW         EC I +R N LSTDFSHSKGVKG+P+R
Sbjct  111  GYEEQKNTQVNIESISFNAFSFTW-----NPTEECKIFIRVNCLSTDFSHSKGVKGVPLR  165

Query  384  LCAKTEMIGPESADSREAEVCYCKVKLFRDHGAERKLSNDVAHVKKTIEK  433
            L  KT   GP SA    A   YC+VK+FRD GAERKLSNDVA VKK I K
Sbjct  166  LQIKTYSYGPGSARPA-AHRAYCQVKVFRDKGAERKLSNDVAKVKKRIGK  214



Lambda      K        H        a         alpha
   0.314    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0712    0.140     1.90     42.6     43.6 

Effective search space used: 846529460


Query= TCONS_00027217

Length=707
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461338 pfam04516, CP2, CP2 transcription factor. This family ...  347     1e-116


>CDD:461338 pfam04516, CP2, CP2 transcription factor.  This family represents 
a conserved region in the CP2 transcription factor family.
Length=214

 Score = 347 bits (892),  Expect = 1e-116, Method: Composition-based stats.
 Identities = 118/230 (51%), Positives = 144/230 (63%), Gaps = 17/230 (7%)

Query  153  FATSAAHDLSDTPGSSENFRYHVTLRAPTAMIKHQNEIPISYLNKGQAYSVSVIDSNPPP  212
             + S A +     GS+ENFR+H TL APTAMIK  NEIP++YLNKGQAYS+S+ID+    
Sbjct  1    NSPSLAAEQYAVSGSTENFRFHYTLEAPTAMIKKVNEIPMTYLNKGQAYSISLIDTGMNK  60

Query  213  MTGHPV-RYRTFIRVSFQEEEQRSKPAACWQLWKEGRGSSEAYQRGGKLQAVEYVDPTQG  271
             +  P  + R+ +RV F E + R +   CWQLWKEGR ++          AV  VDP  G
Sbjct  61   CSVLPGSKLRSVVRVVFHERKLRVEELKCWQLWKEGRPTA----------AVRIVDPLYG  110

Query  272  GIEDHKQRQIQLESASFDGFCVTWTANPATGVPECAISVRFNFLSTDFSHSKGVKGIPVR  331
            G E+ K  Q+ +ES SF+ F  TW         EC I +R N LSTDFSHSKGVKG+P+R
Sbjct  111  GYEEQKNTQVNIESISFNAFSFTW-----NPTEECKIFIRVNCLSTDFSHSKGVKGVPLR  165

Query  332  LCAKTEMIGPESADSREAEVCYCKVKLFRDHGAERKLSNDVAHVKKTIEK  381
            L  KT   GP SA    A   YC+VK+FRD GAERKLSNDVA VKK I K
Sbjct  166  LQIKTYSYGPGSARPA-AHRAYCQVKVFRDKGAERKLSNDVAKVKKRIGK  214



Lambda      K        H        a         alpha
   0.315    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 905521060


Query= TCONS_00022594

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461338 pfam04516, CP2, CP2 transcription factor. This family ...  299     2e-101


>CDD:461338 pfam04516, CP2, CP2 transcription factor.  This family represents 
a conserved region in the CP2 transcription factor family.
Length=214

 Score = 299 bits (767),  Expect = 2e-101, Method: Composition-based stats.
 Identities = 103/200 (52%), Positives = 125/200 (63%), Gaps = 17/200 (9%)

Query  1    MIKHQNEIPISYLNKGQAYSVSVIDSNPPPMTGHPV-RYRTFIRVSFQEEEQRSKPAACW  59
            MIK  NEIP++YLNKGQAYS+S+ID+     +  P  + R+ +RV F E + R +   CW
Sbjct  31   MIKKVNEIPMTYLNKGQAYSISLIDTGMNKCSVLPGSKLRSVVRVVFHERKLRVEELKCW  90

Query  60   QLWKEGRGSSEAYQRGGKLQAVEYVDPTQGGIEDHKQRQIQLESASFDGFCVTWTANPAT  119
            QLWKEGR ++          AV  VDP  GG E+ K  Q+ +ES SF+ F  TW      
Sbjct  91   QLWKEGRPTA----------AVRIVDPLYGGYEEQKNTQVNIESISFNAFSFTWN-----  135

Query  120  GVPECAISVRFNFLSTDFSHSKGVKGIPVRLCAKTEMIGPESADSREAEVCYCKVKLFRD  179
               EC I +R N LSTDFSHSKGVKG+P+RL  KT   GP SA    A   YC+VK+FRD
Sbjct  136  PTEECKIFIRVNCLSTDFSHSKGVKGVPLRLQIKTYSYGPGSARPA-AHRAYCQVKVFRD  194

Query  180  HGAERKLSNDVAHVKKTIEK  199
             GAERKLSNDVA VKK I K
Sbjct  195  KGAERKLSNDVAKVKKRIGK  214



Lambda      K        H        a         alpha
   0.314    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00022595

Length=744
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459884 pfam00637, Clathrin, Region in Clathrin and VPS. Each ...  84.6    8e-20


>CDD:459884 pfam00637, Clathrin, Region in Clathrin and VPS.  Each region 
is about 140 amino acids long. The regions are composed of 
multiple alpha helical repeats. They occur in the arm region 
of the Clathrin heavy chain.
Length=142

 Score = 84.6 bits (210),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 47/164 (29%), Positives = 68/164 (41%), Gaps = 33/164 (20%)

Query  388  PEVVVTQLKDANRLLFLYFYLRALWRGESLPHSAAKPRRGHGARVRDAASKLAADEGKAL  447
               VV   + A  L  L  YL +                   +R           E  AL
Sbjct  10   VSRVVKLFEKAGLLEELISYLESA--------------LKEDSR-----------ENPAL  44

Query  448  VDNFADTA-VELFADYDRPL-LMEFLQVSTAYSFDTAVAVCERRHFTSELIYLLSKMGQT  505
                  TA +EL+A YD P  L EFL+ +  Y  +    +CE+     E + L  K+G  
Sbjct  45   -----QTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKKIGNW  99

Query  506  KKALNLILSDLKDVSLAISFAKSQDDPDLWEDLLNYSMDKPRFI  549
            K+A++L+   L D   AI +A    +P+LWE+LL   +D  RF 
Sbjct  100  KEAISLLK-KLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE  142



Lambda      K        H        a         alpha
   0.318    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 945848800


Query= TCONS_00022596

Length=744
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459884 pfam00637, Clathrin, Region in Clathrin and VPS. Each ...  84.6    8e-20


>CDD:459884 pfam00637, Clathrin, Region in Clathrin and VPS.  Each region 
is about 140 amino acids long. The regions are composed of 
multiple alpha helical repeats. They occur in the arm region 
of the Clathrin heavy chain.
Length=142

 Score = 84.6 bits (210),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 47/164 (29%), Positives = 68/164 (41%), Gaps = 33/164 (20%)

Query  388  PEVVVTQLKDANRLLFLYFYLRALWRGESLPHSAAKPRRGHGARVRDAASKLAADEGKAL  447
               VV   + A  L  L  YL +                   +R           E  AL
Sbjct  10   VSRVVKLFEKAGLLEELISYLESA--------------LKEDSR-----------ENPAL  44

Query  448  VDNFADTA-VELFADYDRPL-LMEFLQVSTAYSFDTAVAVCERRHFTSELIYLLSKMGQT  505
                  TA +EL+A YD P  L EFL+ +  Y  +    +CE+     E + L  K+G  
Sbjct  45   -----QTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKKIGNW  99

Query  506  KKALNLILSDLKDVSLAISFAKSQDDPDLWEDLLNYSMDKPRFI  549
            K+A++L+   L D   AI +A    +P+LWE+LL   +D  RF 
Sbjct  100  KEAISLLK-KLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE  142



Lambda      K        H        a         alpha
   0.318    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 945848800


Query= TCONS_00022597

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.121    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00027218

Length=178
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family         91.6    3e-24


>CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family.  
Length=181

 Score = 91.6 bits (228),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 46/96 (48%), Gaps = 18/96 (19%)

Query  73   DGGFDQYCDSKRRYSNISLILVDSGRADLLEYMSDFWKDFR-GDDEDLWEHEWNKHGTCI  131
             GG+ Q+CD  R + + S I       DLL  ++ +W   + G+ E  W+HEW KHGTC 
Sbjct  42   GGGYPQFCDRSRPF-DPSEIS------DLLNDLNKYWPSLKSGNGESFWKHEWEKHGTCA  94

Query  132  STLETTCYADYYPQQEVVDYFNKTVEIFQKLPTYQV  167
            ST            +   DYFN  +++ +KL     
Sbjct  95   ST--------SLDDE--HDYFNAALKLRKKLNLLSA  120



Lambda      K        H        a         alpha
   0.323    0.140    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00022598

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00022599

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family         139     2e-40


>CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family.  
Length=181

 Score = 139 bits (353),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 80/159 (50%), Gaps = 24/159 (15%)

Query  69   PDFCDG-GFDQYCDSKRRYSNISLILVDSGRADLLEYMSDFWKDFR-GDDEDLWEHEWNK  126
            PD   G G+ Q+CD  R + + S I       DLL  ++ +W   + G+ E  W+HEW K
Sbjct  37   PDNDGGGGYPQFCDRSRPF-DPSEIS------DLLNDLNKYWPSLKSGNGESFWKHEWEK  89

Query  127  HGTCISTLETTCYADYYPQQEVVDYFNKTVEIFQKLPTYQTLANAGIVPSHTETYTLDEI  186
            HGTC ST            +   DYFN  +++ +KL     LA+AGIVPS T+TYTL +I
Sbjct  90   HGTCAST--------SLDDE--HDYFNAALKLRKKLNLLSALASAGIVPSDTKTYTLSDI  139

Query  187  QAALAKAHAAPVTIRCR-----NRALNEVWYHFNIAGSL  220
            + AL K       I+C      N+ L E+   F+   + 
Sbjct  140  KDALKKGFGGTPYIQCNRDPSGNQQLYEIRLCFDKGLTF  178



Lambda      K        H        a         alpha
   0.319    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00027219

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family         139     2e-40


>CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family.  
Length=181

 Score = 139 bits (353),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 80/159 (50%), Gaps = 24/159 (15%)

Query  69   PDFCDG-GFDQYCDSKRRYSNISLILVDSGRADLLEYMSDFWKDFR-GDDEDLWEHEWNK  126
            PD   G G+ Q+CD  R + + S I       DLL  ++ +W   + G+ E  W+HEW K
Sbjct  37   PDNDGGGGYPQFCDRSRPF-DPSEIS------DLLNDLNKYWPSLKSGNGESFWKHEWEK  89

Query  127  HGTCISTLETTCYADYYPQQEVVDYFNKTVEIFQKLPTYQTLANAGIVPSHTETYTLDEI  186
            HGTC ST            +   DYFN  +++ +KL     LA+AGIVPS T+TYTL +I
Sbjct  90   HGTCAST--------SLDDE--HDYFNAALKLRKKLNLLSALASAGIVPSDTKTYTLSDI  139

Query  187  QAALAKAHAAPVTIRCR-----NRALNEVWYHFNIAGSL  220
            + AL K       I+C      N+ L E+   F+   + 
Sbjct  140  KDALKKGFGGTPYIQCNRDPSGNQQLYEIRLCFDKGLTF  178



Lambda      K        H        a         alpha
   0.319    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00022605

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family         167     5e-51


>CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family.  
Length=181

 Score = 167 bits (426),  Expect = 5e-51, Method: Composition-based stats.
 Identities = 68/195 (35%), Positives = 94/195 (48%), Gaps = 32/195 (16%)

Query  61   GGQMLQTQFWDA------DPAVGP--VDSWTIHGLWPDFCDG-GFDQYCDSKRRYSNISL  111
               +L TQ W            GP     +TIHGLWPD   G G+ Q+CD  R + + S 
Sbjct  1    FDFLLLTQQWPGTYCDTKPSCCGPDSGADFTIHGLWPDNDGGGGYPQFCDRSRPF-DPSE  59

Query  112  ILVDSGRADLLEYMSDFWKDFR-GDDEDLWEHEWNKHGTCISTLETTCYADYYPQQEVVD  170
            I       DLL  ++ +W   + G+ E  W+HEW KHGTC ST            +   D
Sbjct  60   IS------DLLNDLNKYWPSLKSGNGESFWKHEWEKHGTCAST--------SLDDE--HD  103

Query  171  YFNKTVEIFQKLPTYQTLANAGIVPSHTETYTLDEIQAALAKAHAAPVTIRCR-----NR  225
            YFN  +++ +KL     LA+AGIVPS T+TYTL +I+ AL K       I+C      N+
Sbjct  104  YFNAALKLRKKLNLLSALASAGIVPSDTKTYTLSDIKDALKKGFGGTPYIQCNRDPSGNQ  163

Query  226  ALNEVWYHFNIAGSL  240
             L E+   F+   + 
Sbjct  164  QLYEIRLCFDKGLTF  178



Lambda      K        H        a         alpha
   0.319    0.134    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00022600

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family         139     2e-40


>CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family.  
Length=181

 Score = 139 bits (353),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 80/159 (50%), Gaps = 24/159 (15%)

Query  69   PDFCDG-GFDQYCDSKRRYSNISLILVDSGRADLLEYMSDFWKDFR-GDDEDLWEHEWNK  126
            PD   G G+ Q+CD  R + + S I       DLL  ++ +W   + G+ E  W+HEW K
Sbjct  37   PDNDGGGGYPQFCDRSRPF-DPSEIS------DLLNDLNKYWPSLKSGNGESFWKHEWEK  89

Query  127  HGTCISTLETTCYADYYPQQEVVDYFNKTVEIFQKLPTYQTLANAGIVPSHTETYTLDEI  186
            HGTC ST            +   DYFN  +++ +KL     LA+AGIVPS T+TYTL +I
Sbjct  90   HGTCAST--------SLDDE--HDYFNAALKLRKKLNLLSALASAGIVPSDTKTYTLSDI  139

Query  187  QAALAKAHAAPVTIRCR-----NRALNEVWYHFNIAGSL  220
            + AL K       I+C      N+ L E+   F+   + 
Sbjct  140  KDALKKGFGGTPYIQCNRDPSGNQQLYEIRLCFDKGLTF  178



Lambda      K        H        a         alpha
   0.319    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00022601

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00022602

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460604 pfam02582, DUF155, Uncharacterized ACR, YagE family CO...  179     2e-55


>CDD:460604 pfam02582, DUF155, Uncharacterized ACR, YagE family COG1723. 
 
Length=173

 Score = 179 bits (456),  Expect = 2e-55, Method: Composition-based stats.
 Identities = 76/198 (38%), Positives = 106/198 (54%), Gaps = 30/198 (15%)

Query  169  VFVFPSGTVVAWSLPEG-FTSFLATRTLLPAAEGAHIDNL----ETEDLEYIEDPQRENS  223
            VFVF  G VV W+L E     FL  + LL  AE   I  L    ETE+ +Y+   +   S
Sbjct  1    VFVFRYGVVVFWNLSEEEEKRFL--KDLLRFAEEPSIPPLLEEEETEEFDYVYPSE---S  55

Query  224  SIKGDTIILGTKSGNDDPESKLGRQSVDTVLTKVAFSSGLARSTKLAVLETLLANYFEST  283
             I+ D I+LG+                D +L K+A S  LA+S KL+V E LL    EST
Sbjct  56   RIQNDIIVLGS----------------DDLLAKLAISHALAQSVKLSVFEELLDKLLEST  99

Query  284  RTIPTLLSQGSRLPFTRDFILRKTGQLLSVRAQLNLYSELTDSLPDLFWDSRHELGLEGY  343
             +IP  L++  +L  +R  +L+K G+LL +R  +NL SEL D+ PD FW+   E  LE  
Sbjct  100  ESIPEELAKTGKLKLSRKELLKKIGELLLLRHDINLNSELLDT-PDFFWE---EPELEPL  155

Query  344  YEQVGRALDVGIRIKLLN  361
            YE +   L++  RI++LN
Sbjct  156  YEALREYLEIKERIEVLN  173



Lambda      K        H        a         alpha
   0.315    0.132    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00022603

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family         167     5e-51


>CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family.  
Length=181

 Score = 167 bits (426),  Expect = 5e-51, Method: Composition-based stats.
 Identities = 68/195 (35%), Positives = 94/195 (48%), Gaps = 32/195 (16%)

Query  61   GGQMLQTQFWDA------DPAVGP--VDSWTIHGLWPDFCDG-GFDQYCDSKRRYSNISL  111
               +L TQ W            GP     +TIHGLWPD   G G+ Q+CD  R + + S 
Sbjct  1    FDFLLLTQQWPGTYCDTKPSCCGPDSGADFTIHGLWPDNDGGGGYPQFCDRSRPF-DPSE  59

Query  112  ILVDSGRADLLEYMSDFWKDFR-GDDEDLWEHEWNKHGTCISTLETTCYADYYPQQEVVD  170
            I       DLL  ++ +W   + G+ E  W+HEW KHGTC ST            +   D
Sbjct  60   IS------DLLNDLNKYWPSLKSGNGESFWKHEWEKHGTCAST--------SLDDE--HD  103

Query  171  YFNKTVEIFQKLPTYQTLANAGIVPSHTETYTLDEIQAALAKAHAAPVTIRCR-----NR  225
            YFN  +++ +KL     LA+AGIVPS T+TYTL +I+ AL K       I+C      N+
Sbjct  104  YFNAALKLRKKLNLLSALASAGIVPSDTKTYTLSDIKDALKKGFGGTPYIQCNRDPSGNQ  163

Query  226  ALNEVWYHFNIAGSL  240
             L E+   F+   + 
Sbjct  164  QLYEIRLCFDKGLTF  178



Lambda      K        H        a         alpha
   0.319    0.134    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00022604

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family         167     5e-51


>CDD:459812 pfam00445, Ribonuclease_T2, Ribonuclease T2 family.  
Length=181

 Score = 167 bits (426),  Expect = 5e-51, Method: Composition-based stats.
 Identities = 68/195 (35%), Positives = 94/195 (48%), Gaps = 32/195 (16%)

Query  61   GGQMLQTQFWDA------DPAVGP--VDSWTIHGLWPDFCDG-GFDQYCDSKRRYSNISL  111
               +L TQ W            GP     +TIHGLWPD   G G+ Q+CD  R + + S 
Sbjct  1    FDFLLLTQQWPGTYCDTKPSCCGPDSGADFTIHGLWPDNDGGGGYPQFCDRSRPF-DPSE  59

Query  112  ILVDSGRADLLEYMSDFWKDFR-GDDEDLWEHEWNKHGTCISTLETTCYADYYPQQEVVD  170
            I       DLL  ++ +W   + G+ E  W+HEW KHGTC ST            +   D
Sbjct  60   IS------DLLNDLNKYWPSLKSGNGESFWKHEWEKHGTCAST--------SLDDE--HD  103

Query  171  YFNKTVEIFQKLPTYQTLANAGIVPSHTETYTLDEIQAALAKAHAAPVTIRCR-----NR  225
            YFN  +++ +KL     LA+AGIVPS T+TYTL +I+ AL K       I+C      N+
Sbjct  104  YFNAALKLRKKLNLLSALASAGIVPSDTKTYTLSDIKDALKKGFGGTPYIQCNRDPSGNQ  163

Query  226  ALNEVWYHFNIAGSL  240
             L E+   F+   + 
Sbjct  164  QLYEIRLCFDKGLTF  178



Lambda      K        H        a         alpha
   0.319    0.134    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00022606

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425828 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18   131     9e-38


>CDD:425828 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18.  
Length=311

 Score = 131 bits (330),  Expect = 9e-38, Method: Composition-based stats.
 Identities = 60/160 (38%), Positives = 84/160 (53%), Gaps = 21/160 (13%)

Query  3    PFLDFYNLMAYDYAGSWDSVAGHQANLFPSNGNPSSTPFSTIQAINYYTQVGGVPPSKII  62
             +LDF N+M YD+ GSWD+V GH A L+          ++   A+ YY +  GVP SK++
Sbjct  169  KYLDFINVMTYDFHGSWDNVTGHHAPLYGGGS------YNVDYAVKYYLK-QGVPASKLV  221

Query  63   LGMPLYGRDFLSTNGPGTPYSGNGAGSWEHGVWDYKALPQ----PGATEVFDQQAGASWS  118
            LG+P YGR +   NG G         +WE GV  YK +       GAT V+D  A A + 
Sbjct  222  LGVPFYGRSWTLVNGSG--------NTWEDGVLAYKEICNLLKDNGATVVWDDVAKAPYV  273

Query  119  YDAGARTMVSYDTVTAAEMKVNFIKEQGLGGGMWWEASGD  158
            YD      ++YD   +   KV+++K +GLGG M W    D
Sbjct  274  YDGD--QFITYDDPRSIATKVDYVKAKGLGGVMIWSLDAD  311



Lambda      K        H        a         alpha
   0.314    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00022607

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459726 pfam00240, ubiquitin, Ubiquitin family. This family co...  113     2e-34
CDD:460261 pfam01599, Ribosomal_S27, Ribosomal protein S27a. This...  90.7    7e-26
CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like...  69.1    4e-17


>CDD:459726 pfam00240, ubiquitin, Ubiquitin family.  This family contains 
a number of ubiquitin-like proteins: SUMO (smt3 homolog), Nedd8, 
Elongin B, Rub1, and Parkin. A number of them are thought 
to carry a distinctive five-residue motif termed the proteasome-interacting 
motif (PIM), which may have a biologically 
significant role in protein delivery to proteasomes and recruitment 
of proteasomes to transcription sites.
Length=72

 Score = 113 bits (284),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 0/72 (0%)

Query  3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ  62
           I VKTL GK ITLEV+ +DT+  +K KI +KEG+PP+QQRLI++GK LED +TL +Y I+
Sbjct  1   ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  63  KESTLHLVLRLR  74
             ST+HLVLR R
Sbjct  61  DGSTIHLVLRQR  72


>CDD:460261 pfam01599, Ribosomal_S27, Ribosomal protein S27a.  This family 
of ribosomal proteins consists mainly of the 40S ribosomal 
protein S27a which is synthesized as a C-terminal extension 
of ubiquitin (CEP). The S27a domain compromises the C-terminal 
half of the protein. The synthesis of ribosomal proteins 
as extensions of ubiquitin promotes their incorporation into 
nascent ribosomes by a transient metabolic stabilisation and 
is required for efficient ribosome biogenesis. The ribosomal 
extension protein S27a contains a basic region that is proposed 
to form a zinc finger; its fusion gene is proposed as 
a mechanism to maintain a fixed ratio between ubiquitin necessary 
for degrading proteins and ribosomes a source of proteins.
Length=43

 Score = 90.7 bits (226),  Expect = 7e-26, Method: Composition-based stats.
 Identities = 32/45 (71%), Positives = 36/45 (80%), Gaps = 2/45 (4%)

Query  103  LKYYKVDGDGKIERLRRECPSPECGAGIFMAAMHNRQYCGKCHLT  147
            LKYYKVD DGK+ERLR+ECP   CGAG+FMA   +R YCGKC LT
Sbjct  1    LKYYKVDDDGKVERLRKECPR--CGAGVFMAEHKDRHYCGKCGLT  43


>CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like.  The 
small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, 
and although SUMO-1 shares structural similarity to Ub, 
SUMO's cellular functions remain distinct insomuch as SUMO 
modification alters protein function through changes in activity, 
cellular localization, or by protecting substrates from 
ubiquitination. Rad60 family members contain functionally 
enigmatic, integral SUMO-like domains (SLDs). Despite their 
divergence from SUMO, each Rad60 SLD interacts with a subset 
of SUMO pathway enzymes: SLD2 specifically binds the SUMO 
E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO 
E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called 
Siz1 and Siz2) specificity enzymes. Structural analysis 
of Structure 2uyz reveals a mechanistic basis for the near-synonymous 
roles of Rad60 and SUMO in survival of genotoxic 
stress and suggest unprecedented DNA-damage-response functions 
for SLDs in regulating SUMOylation. The Rad60 branch of this 
family is also known as RENi (Rad60-Esc2-Nip45), and biologically 
it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45).
Length=72

 Score = 69.1 bits (170),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 45/72 (63%), Gaps = 1/72 (1%)

Query  1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY  59
           ++I +K   GK + ++V+ + T+  + +  + K GIPP QQ RLIF G++L+   T+ D 
Sbjct  1   IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDL  60

Query  60  NIQKESTLHLVL  71
           +I+   T+ +V+
Sbjct  61  DIEDGDTIDVVI  72



Lambda      K        H        a         alpha
   0.318    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00027220

Length=23


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 75925852


Query= TCONS_00022608

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00022609

Length=126
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459721 pfam00227, Proteasome, Proteasome subunit. The proteas...  73.8    4e-18


>CDD:459721 pfam00227, Proteasome, Proteasome subunit.  The proteasome is 
a multisubunit structure that degrades proteins. Protein degradation 
is an essential component of regulation because proteins 
can become misfolded, damaged, or unnecessary. Proteasomes 
and their homologs vary greatly in complexity: from HslV 
(heat shock locus v), which is encoded by 1 gene in bacteria, 
to the eukaryotic 20S proteasome, which is encoded by more 
than 14 genes. Recently evidence of two novel groups of 
bacterial proteasomes was proposed. The first is Anbu, which 
is sparsely distributed among cyanobacteria and proteobacteria. 
The second is call beta-proteobacteria proteasome homolog 
(BPH).
Length=188

 Score = 73.8 bits (182),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 49/93 (53%), Gaps = 5/93 (5%)

Query  1    MRPLGVAMTLISVDDEKGPQLYKCDPAGYYVGYKATASGPKQQEALNYLEKKLKNKDYAE  60
             RP GV++ +   D++ GP LY+ DP+G Y+ YKATA G   Q A   LEK  +  D   
Sbjct  100  RRPFGVSLLIAGYDEDGGPHLYQIDPSGSYIEYKATAIGSGSQYAYGVLEKLYR-PDLTL  158

Query  61   GSWEEVVELGITALSNVLSVD-FKKHELEIGIV  92
               EE VEL + AL   +  D      +E+ ++
Sbjct  159  ---EEAVELAVKALKEAIDRDALSGGNIEVAVI  188



Lambda      K        H        a         alpha
   0.311    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00022610

Length=126
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459721 pfam00227, Proteasome, Proteasome subunit. The proteas...  73.8    4e-18


>CDD:459721 pfam00227, Proteasome, Proteasome subunit.  The proteasome is 
a multisubunit structure that degrades proteins. Protein degradation 
is an essential component of regulation because proteins 
can become misfolded, damaged, or unnecessary. Proteasomes 
and their homologs vary greatly in complexity: from HslV 
(heat shock locus v), which is encoded by 1 gene in bacteria, 
to the eukaryotic 20S proteasome, which is encoded by more 
than 14 genes. Recently evidence of two novel groups of 
bacterial proteasomes was proposed. The first is Anbu, which 
is sparsely distributed among cyanobacteria and proteobacteria. 
The second is call beta-proteobacteria proteasome homolog 
(BPH).
Length=188

 Score = 73.8 bits (182),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 34/93 (37%), Positives = 49/93 (53%), Gaps = 5/93 (5%)

Query  1    MRPLGVAMTLISVDDEKGPQLYKCDPAGYYVGYKATASGPKQQEALNYLEKKLKNKDYAE  60
             RP GV++ +   D++ GP LY+ DP+G Y+ YKATA G   Q A   LEK  +  D   
Sbjct  100  RRPFGVSLLIAGYDEDGGPHLYQIDPSGSYIEYKATAIGSGSQYAYGVLEKLYR-PDLTL  158

Query  61   GSWEEVVELGITALSNVLSVD-FKKHELEIGIV  92
               EE VEL + AL   +  D      +E+ ++
Sbjct  159  ---EEAVELAVKALKEAIDRDALSGGNIEVAVI  188



Lambda      K        H        a         alpha
   0.311    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00022611

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403097 pfam11787, Aft1_HRR, Aft1 HRR domain. This domain is f...  90.1    7e-24
CDD:371723 pfam11786, Aft1_HRA, Aft1 HRA domain. This domain is f...  74.9    6e-18


>CDD:403097 pfam11787, Aft1_HRR, Aft1 HRR domain.  This domain is found in 
the transcription factor Aft1 which is required for a wide 
range of stress responses. The HRR domain is involved in meiotic 
recombination. It has been shown to be necessary and sufficient 
to repress recombination.
Length=68

 Score = 90.1 bits (224),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 37/73 (51%), Positives = 44/73 (60%), Gaps = 5/73 (7%)

Query  58   GATPSTIEFHRTALSAAKKNGLSGPTSNPTADSEGVHSSSMDIKSSQPASVDPFTHHDAA  117
            GATP T++FHRTALSAA K   + PTS P     G+  +  + K       DPF  HD  
Sbjct  1    GATPGTLDFHRTALSAAAKRESNAPTSQPQDMPNGMDQNKAEPKPQS----DPFDPHD-N  55

Query  118  DAANGLFMLAKGG  130
            DAANGLFMLA+G 
Sbjct  56   DAANGLFMLAQGR  68


>CDD:371723 pfam11786, Aft1_HRA, Aft1 HRA domain.  This domain is found in 
the transcription factor Aft1 which is required for a wide 
range of stress responses. The HRA domain is involved in meiotic 
recombination. It has been shown to be necessary and sufficient 
to activate recombination.
Length=76

 Score = 74.9 bits (184),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 43/56 (77%), Positives = 46/56 (82%), Gaps = 5/56 (9%)

Query  1   MLAGPAGGN--DYFD--SIGRGFPTPNESSLRTGLTPGGGGSMFPAPSPNSQAILQ  52
           MLAGP G +  DYFD  SI  GF TPNESSLRTGLTPGGGGSMFPAPSPN+ A+LQ
Sbjct  22  MLAGPQGASQSDYFDTTSIRTGF-TPNESSLRTGLTPGGGGSMFPAPSPNTAALLQ  76



Lambda      K        H        a         alpha
   0.304    0.121    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00027221

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403097 pfam11787, Aft1_HRR, Aft1 HRR domain. This domain is f...  90.1    7e-24
CDD:371723 pfam11786, Aft1_HRA, Aft1 HRA domain. This domain is f...  74.9    6e-18


>CDD:403097 pfam11787, Aft1_HRR, Aft1 HRR domain.  This domain is found in 
the transcription factor Aft1 which is required for a wide 
range of stress responses. The HRR domain is involved in meiotic 
recombination. It has been shown to be necessary and sufficient 
to repress recombination.
Length=68

 Score = 90.1 bits (224),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 37/73 (51%), Positives = 44/73 (60%), Gaps = 5/73 (7%)

Query  58   GATPSTIEFHRTALSAAKKNGLSGPTSNPTADSEGVHSSSMDIKSSQPASVDPFTHHDAA  117
            GATP T++FHRTALSAA K   + PTS P     G+  +  + K       DPF  HD  
Sbjct  1    GATPGTLDFHRTALSAAAKRESNAPTSQPQDMPNGMDQNKAEPKPQS----DPFDPHD-N  55

Query  118  DAANGLFMLAKGG  130
            DAANGLFMLA+G 
Sbjct  56   DAANGLFMLAQGR  68


>CDD:371723 pfam11786, Aft1_HRA, Aft1 HRA domain.  This domain is found in 
the transcription factor Aft1 which is required for a wide 
range of stress responses. The HRA domain is involved in meiotic 
recombination. It has been shown to be necessary and sufficient 
to activate recombination.
Length=76

 Score = 74.9 bits (184),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 43/56 (77%), Positives = 46/56 (82%), Gaps = 5/56 (9%)

Query  1   MLAGPAGGN--DYFD--SIGRGFPTPNESSLRTGLTPGGGGSMFPAPSPNSQAILQ  52
           MLAGP G +  DYFD  SI  GF TPNESSLRTGLTPGGGGSMFPAPSPN+ A+LQ
Sbjct  22  MLAGPQGASQSDYFDTTSIRTGF-TPNESSLRTGLTPGGGGSMFPAPSPNTAALLQ  76



Lambda      K        H        a         alpha
   0.304    0.121    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00022612

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459857 pfam00576, Transthyretin, HIUase/Transthyretin family....  150     8e-48


>CDD:459857 pfam00576, Transthyretin, HIUase/Transthyretin family.  This 
family includes transthyretin that is a thyroid hormone-binding 
protein that transports thyroxine from the bloodstream to 
the brain. However, most of the sequences listed in this family 
do not bind thyroid hormones. They are actually enzymes 
of the purine catabolism that catalyze the conversion of 5-hydroxyisourate 
(HIU) to OHCU. HIU hydrolysis is the original 
function of the family and is conserved from bacteria to 
mammals; transthyretins arose by gene duplications in the vertebrate 
lineage. HIUases are distinguished in the alignment 
from the conserved C-terminal YRGS sequence.
Length=108

 Score = 150 bits (381),  Expect = 8e-48, Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 66/136 (49%), Gaps = 28/136 (21%)

Query  59   ITCHVLNTLSGTPAANLPVTLTFLGSSNGNNASQSPITFNATTDADGRVKNWTATAATAT  118
            +T HVL+T  G PAA + VTL  L            +    TT+ADGR  +         
Sbjct  1    LTTHVLDTARGRPAAGVRVTLYRLDGD------GWTLLAEGTTNADGRCDDLLLEGEAL-  53

Query  119  TVSGVLSSLPTADSKTNWAVRFEVGPWYAAQGIESFWPEVEVKFTVKGRGREGEEDWRHY  178
               G             + + F+ G ++AA+G+ESF+PEVEV+F +            HY
Sbjct  54   -EPGT------------YRLVFDTGAYFAARGVESFYPEVEVRFGITDA--------EHY  92

Query  179  HVPVLLGPWNYSTYRG  194
            HVP+LL P+ YSTYRG
Sbjct  93   HVPLLLSPFGYSTYRG  108



Lambda      K        H        a         alpha
   0.312    0.125    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00022613

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459857 pfam00576, Transthyretin, HIUase/Transthyretin family....  150     8e-48


>CDD:459857 pfam00576, Transthyretin, HIUase/Transthyretin family.  This 
family includes transthyretin that is a thyroid hormone-binding 
protein that transports thyroxine from the bloodstream to 
the brain. However, most of the sequences listed in this family 
do not bind thyroid hormones. They are actually enzymes 
of the purine catabolism that catalyze the conversion of 5-hydroxyisourate 
(HIU) to OHCU. HIU hydrolysis is the original 
function of the family and is conserved from bacteria to 
mammals; transthyretins arose by gene duplications in the vertebrate 
lineage. HIUases are distinguished in the alignment 
from the conserved C-terminal YRGS sequence.
Length=108

 Score = 150 bits (381),  Expect = 8e-48, Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 66/136 (49%), Gaps = 28/136 (21%)

Query  59   ITCHVLNTLSGTPAANLPVTLTFLGSSNGNNASQSPITFNATTDADGRVKNWTATAATAT  118
            +T HVL+T  G PAA + VTL  L            +    TT+ADGR  +         
Sbjct  1    LTTHVLDTARGRPAAGVRVTLYRLDGD------GWTLLAEGTTNADGRCDDLLLEGEAL-  53

Query  119  TVSGVLSSLPTADSKTNWAVRFEVGPWYAAQGIESFWPEVEVKFTVKGRGREGEEDWRHY  178
               G             + + F+ G ++AA+G+ESF+PEVEV+F +            HY
Sbjct  54   -EPGT------------YRLVFDTGAYFAARGVESFYPEVEVRFGITDA--------EHY  92

Query  179  HVPVLLGPWNYSTYRG  194
            HVP+LL P+ YSTYRG
Sbjct  93   HVPLLLSPFGYSTYRG  108



Lambda      K        H        a         alpha
   0.312    0.125    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00027222

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396792 pfam02374, ArsA_ATPase, Anion-transporting ATPase. Thi...  353     9e-123


>CDD:396792 pfam02374, ArsA_ATPase, Anion-transporting ATPase.  This Pfam 
family represents a conserved domain, which is sometimes repeated, 
in an anion-transporting ATPase. The ATPase is involved 
in the removal of arsenate, antimonite, and arsenate from 
the cell.
Length=302

 Score = 353 bits (907),  Expect = 9e-123, Method: Composition-based stats.
 Identities = 155/309 (50%), Positives = 200/309 (65%), Gaps = 9/309 (3%)

Query  26   LRWIFVGGKGGVGKTTTSCSLAIQLAKVRKSVLLISTDPAHNLSDAFGQKFGKEARLVDG  85
            +RWIF GGKGGVGKTT S + A+QL+++ K VLLISTDPAH+LSD+F QKFG E   V  
Sbjct  1    MRWIFFGGKGGVGKTTVSAATAVQLSELGKKVLLISTDPAHSLSDSFNQKFGHEPTKVK-  59

Query  86   YSNLSAMEIDPNGSIQDLLASGDSQGDDPLAGLGMG-NMMQDLAFSIPGVDEAMSFAEVL  144
              NLSAMEIDPN  +++       +  + L GL M   ++ +   S+PG+DEA SF E  
Sbjct  60   -ENLSAMEIDPNMELEEYWQEV-QKYMNALLGLRMLEGILAEELASLPGIDEAASFDEFK  117

Query  145  KQVKSLSYEVIVFDTAPTGHTLRFLQFPTVLEKALAKLSQLSSQFGPMLNSILGARGGLP  204
            K +    Y+V+VFDTAPTGHTLR L  PTVL   L K+ +L +Q GP+    LG      
Sbjct  118  KYMDEGEYDVVVFDTAPTGHTLRLLSLPTVLGWYLEKIVKLKNQIGPLAKPFLGM-----  172

Query  205  GGQNIDELLQKMESLRETISEVNTQFKNPDMTTFVCVCIAEFLSLYETERMIQELTSYGI  264
            GG +I E L+ +E  +E I        +P+ T+F  VCI E +SLYETER IQ L  YGI
Sbjct  173  GGVSIPEALESLEETKERIERAREILTDPERTSFRLVCIPEKMSLYETERAIQYLAKYGI  232

Query  265  DTHAIVVNQLLFPKEGSGCEQCNARRKMQKKYLEQIEELYEDFNVVRMPLLVEEVRGKEK  324
            D  A++VNQ+L       C  C AR+K+Q+KYL++IEEL+ DF V ++PLL EEV G EK
Sbjct  233  DVDAVIVNQVLPENVQENCPFCEARKKIQQKYLDEIEELFSDFPVAKLPLLPEEVVGLEK  292

Query  325  LEKFSEMLV  333
            LEKFS+ L 
Sbjct  293  LEKFSKFLY  301



Lambda      K        H        a         alpha
   0.317    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00022614

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00027223

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396792 pfam02374, ArsA_ATPase, Anion-transporting ATPase. Thi...  353     9e-123


>CDD:396792 pfam02374, ArsA_ATPase, Anion-transporting ATPase.  This Pfam 
family represents a conserved domain, which is sometimes repeated, 
in an anion-transporting ATPase. The ATPase is involved 
in the removal of arsenate, antimonite, and arsenate from 
the cell.
Length=302

 Score = 353 bits (907),  Expect = 9e-123, Method: Composition-based stats.
 Identities = 155/309 (50%), Positives = 200/309 (65%), Gaps = 9/309 (3%)

Query  26   LRWIFVGGKGGVGKTTTSCSLAIQLAKVRKSVLLISTDPAHNLSDAFGQKFGKEARLVDG  85
            +RWIF GGKGGVGKTT S + A+QL+++ K VLLISTDPAH+LSD+F QKFG E   V  
Sbjct  1    MRWIFFGGKGGVGKTTVSAATAVQLSELGKKVLLISTDPAHSLSDSFNQKFGHEPTKVK-  59

Query  86   YSNLSAMEIDPNGSIQDLLASGDSQGDDPLAGLGMG-NMMQDLAFSIPGVDEAMSFAEVL  144
              NLSAMEIDPN  +++       +  + L GL M   ++ +   S+PG+DEA SF E  
Sbjct  60   -ENLSAMEIDPNMELEEYWQEV-QKYMNALLGLRMLEGILAEELASLPGIDEAASFDEFK  117

Query  145  KQVKSLSYEVIVFDTAPTGHTLRFLQFPTVLEKALAKLSQLSSQFGPMLNSILGARGGLP  204
            K +    Y+V+VFDTAPTGHTLR L  PTVL   L K+ +L +Q GP+    LG      
Sbjct  118  KYMDEGEYDVVVFDTAPTGHTLRLLSLPTVLGWYLEKIVKLKNQIGPLAKPFLGM-----  172

Query  205  GGQNIDELLQKMESLRETISEVNTQFKNPDMTTFVCVCIAEFLSLYETERMIQELTSYGI  264
            GG +I E L+ +E  +E I        +P+ T+F  VCI E +SLYETER IQ L  YGI
Sbjct  173  GGVSIPEALESLEETKERIERAREILTDPERTSFRLVCIPEKMSLYETERAIQYLAKYGI  232

Query  265  DTHAIVVNQLLFPKEGSGCEQCNARRKMQKKYLEQIEELYEDFNVVRMPLLVEEVRGKEK  324
            D  A++VNQ+L       C  C AR+K+Q+KYL++IEEL+ DF V ++PLL EEV G EK
Sbjct  233  DVDAVIVNQVLPENVQENCPFCEARKKIQQKYLDEIEELFSDFPVAKLPLLPEEVVGLEK  292

Query  325  LEKFSEMLV  333
            LEKFS+ L 
Sbjct  293  LEKFSKFLY  301



Lambda      K        H        a         alpha
   0.317    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00027224

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396792 pfam02374, ArsA_ATPase, Anion-transporting ATPase. Thi...  353     9e-123


>CDD:396792 pfam02374, ArsA_ATPase, Anion-transporting ATPase.  This Pfam 
family represents a conserved domain, which is sometimes repeated, 
in an anion-transporting ATPase. The ATPase is involved 
in the removal of arsenate, antimonite, and arsenate from 
the cell.
Length=302

 Score = 353 bits (907),  Expect = 9e-123, Method: Composition-based stats.
 Identities = 155/309 (50%), Positives = 200/309 (65%), Gaps = 9/309 (3%)

Query  26   LRWIFVGGKGGVGKTTTSCSLAIQLAKVRKSVLLISTDPAHNLSDAFGQKFGKEARLVDG  85
            +RWIF GGKGGVGKTT S + A+QL+++ K VLLISTDPAH+LSD+F QKFG E   V  
Sbjct  1    MRWIFFGGKGGVGKTTVSAATAVQLSELGKKVLLISTDPAHSLSDSFNQKFGHEPTKVK-  59

Query  86   YSNLSAMEIDPNGSIQDLLASGDSQGDDPLAGLGMG-NMMQDLAFSIPGVDEAMSFAEVL  144
              NLSAMEIDPN  +++       +  + L GL M   ++ +   S+PG+DEA SF E  
Sbjct  60   -ENLSAMEIDPNMELEEYWQEV-QKYMNALLGLRMLEGILAEELASLPGIDEAASFDEFK  117

Query  145  KQVKSLSYEVIVFDTAPTGHTLRFLQFPTVLEKALAKLSQLSSQFGPMLNSILGARGGLP  204
            K +    Y+V+VFDTAPTGHTLR L  PTVL   L K+ +L +Q GP+    LG      
Sbjct  118  KYMDEGEYDVVVFDTAPTGHTLRLLSLPTVLGWYLEKIVKLKNQIGPLAKPFLGM-----  172

Query  205  GGQNIDELLQKMESLRETISEVNTQFKNPDMTTFVCVCIAEFLSLYETERMIQELTSYGI  264
            GG +I E L+ +E  +E I        +P+ T+F  VCI E +SLYETER IQ L  YGI
Sbjct  173  GGVSIPEALESLEETKERIERAREILTDPERTSFRLVCIPEKMSLYETERAIQYLAKYGI  232

Query  265  DTHAIVVNQLLFPKEGSGCEQCNARRKMQKKYLEQIEELYEDFNVVRMPLLVEEVRGKEK  324
            D  A++VNQ+L       C  C AR+K+Q+KYL++IEEL+ DF V ++PLL EEV G EK
Sbjct  233  DVDAVIVNQVLPENVQENCPFCEARKKIQQKYLDEIEELFSDFPVAKLPLLPEEVVGLEK  292

Query  325  LEKFSEMLV  333
            LEKFS+ L 
Sbjct  293  LEKFSKFLY  301



Lambda      K        H        a         alpha
   0.317    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00027225

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396792 pfam02374, ArsA_ATPase, Anion-transporting ATPase. Thi...  353     9e-123


>CDD:396792 pfam02374, ArsA_ATPase, Anion-transporting ATPase.  This Pfam 
family represents a conserved domain, which is sometimes repeated, 
in an anion-transporting ATPase. The ATPase is involved 
in the removal of arsenate, antimonite, and arsenate from 
the cell.
Length=302

 Score = 353 bits (907),  Expect = 9e-123, Method: Composition-based stats.
 Identities = 155/309 (50%), Positives = 200/309 (65%), Gaps = 9/309 (3%)

Query  26   LRWIFVGGKGGVGKTTTSCSLAIQLAKVRKSVLLISTDPAHNLSDAFGQKFGKEARLVDG  85
            +RWIF GGKGGVGKTT S + A+QL+++ K VLLISTDPAH+LSD+F QKFG E   V  
Sbjct  1    MRWIFFGGKGGVGKTTVSAATAVQLSELGKKVLLISTDPAHSLSDSFNQKFGHEPTKVK-  59

Query  86   YSNLSAMEIDPNGSIQDLLASGDSQGDDPLAGLGMG-NMMQDLAFSIPGVDEAMSFAEVL  144
              NLSAMEIDPN  +++       +  + L GL M   ++ +   S+PG+DEA SF E  
Sbjct  60   -ENLSAMEIDPNMELEEYWQEV-QKYMNALLGLRMLEGILAEELASLPGIDEAASFDEFK  117

Query  145  KQVKSLSYEVIVFDTAPTGHTLRFLQFPTVLEKALAKLSQLSSQFGPMLNSILGARGGLP  204
            K +    Y+V+VFDTAPTGHTLR L  PTVL   L K+ +L +Q GP+    LG      
Sbjct  118  KYMDEGEYDVVVFDTAPTGHTLRLLSLPTVLGWYLEKIVKLKNQIGPLAKPFLGM-----  172

Query  205  GGQNIDELLQKMESLRETISEVNTQFKNPDMTTFVCVCIAEFLSLYETERMIQELTSYGI  264
            GG +I E L+ +E  +E I        +P+ T+F  VCI E +SLYETER IQ L  YGI
Sbjct  173  GGVSIPEALESLEETKERIERAREILTDPERTSFRLVCIPEKMSLYETERAIQYLAKYGI  232

Query  265  DTHAIVVNQLLFPKEGSGCEQCNARRKMQKKYLEQIEELYEDFNVVRMPLLVEEVRGKEK  324
            D  A++VNQ+L       C  C AR+K+Q+KYL++IEEL+ DF V ++PLL EEV G EK
Sbjct  233  DVDAVIVNQVLPENVQENCPFCEARKKIQQKYLDEIEELFSDFPVAKLPLLPEEVVGLEK  292

Query  325  LEKFSEMLV  333
            LEKFS+ L 
Sbjct  293  LEKFSKFLY  301



Lambda      K        H        a         alpha
   0.317    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00022615

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396792 pfam02374, ArsA_ATPase, Anion-transporting ATPase. Thi...  353     9e-123


>CDD:396792 pfam02374, ArsA_ATPase, Anion-transporting ATPase.  This Pfam 
family represents a conserved domain, which is sometimes repeated, 
in an anion-transporting ATPase. The ATPase is involved 
in the removal of arsenate, antimonite, and arsenate from 
the cell.
Length=302

 Score = 353 bits (907),  Expect = 9e-123, Method: Composition-based stats.
 Identities = 155/309 (50%), Positives = 200/309 (65%), Gaps = 9/309 (3%)

Query  26   LRWIFVGGKGGVGKTTTSCSLAIQLAKVRKSVLLISTDPAHNLSDAFGQKFGKEARLVDG  85
            +RWIF GGKGGVGKTT S + A+QL+++ K VLLISTDPAH+LSD+F QKFG E   V  
Sbjct  1    MRWIFFGGKGGVGKTTVSAATAVQLSELGKKVLLISTDPAHSLSDSFNQKFGHEPTKVK-  59

Query  86   YSNLSAMEIDPNGSIQDLLASGDSQGDDPLAGLGMG-NMMQDLAFSIPGVDEAMSFAEVL  144
              NLSAMEIDPN  +++       +  + L GL M   ++ +   S+PG+DEA SF E  
Sbjct  60   -ENLSAMEIDPNMELEEYWQEV-QKYMNALLGLRMLEGILAEELASLPGIDEAASFDEFK  117

Query  145  KQVKSLSYEVIVFDTAPTGHTLRFLQFPTVLEKALAKLSQLSSQFGPMLNSILGARGGLP  204
            K +    Y+V+VFDTAPTGHTLR L  PTVL   L K+ +L +Q GP+    LG      
Sbjct  118  KYMDEGEYDVVVFDTAPTGHTLRLLSLPTVLGWYLEKIVKLKNQIGPLAKPFLGM-----  172

Query  205  GGQNIDELLQKMESLRETISEVNTQFKNPDMTTFVCVCIAEFLSLYETERMIQELTSYGI  264
            GG +I E L+ +E  +E I        +P+ T+F  VCI E +SLYETER IQ L  YGI
Sbjct  173  GGVSIPEALESLEETKERIERAREILTDPERTSFRLVCIPEKMSLYETERAIQYLAKYGI  232

Query  265  DTHAIVVNQLLFPKEGSGCEQCNARRKMQKKYLEQIEELYEDFNVVRMPLLVEEVRGKEK  324
            D  A++VNQ+L       C  C AR+K+Q+KYL++IEEL+ DF V ++PLL EEV G EK
Sbjct  233  DVDAVIVNQVLPENVQENCPFCEARKKIQQKYLDEIEELFSDFPVAKLPLLPEEVVGLEK  292

Query  325  LEKFSEMLV  333
            LEKFS+ L 
Sbjct  293  LEKFSKFLY  301



Lambda      K        H        a         alpha
   0.317    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00022617

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396792 pfam02374, ArsA_ATPase, Anion-transporting ATPase. Thi...  353     9e-123


>CDD:396792 pfam02374, ArsA_ATPase, Anion-transporting ATPase.  This Pfam 
family represents a conserved domain, which is sometimes repeated, 
in an anion-transporting ATPase. The ATPase is involved 
in the removal of arsenate, antimonite, and arsenate from 
the cell.
Length=302

 Score = 353 bits (907),  Expect = 9e-123, Method: Composition-based stats.
 Identities = 155/309 (50%), Positives = 200/309 (65%), Gaps = 9/309 (3%)

Query  26   LRWIFVGGKGGVGKTTTSCSLAIQLAKVRKSVLLISTDPAHNLSDAFGQKFGKEARLVDG  85
            +RWIF GGKGGVGKTT S + A+QL+++ K VLLISTDPAH+LSD+F QKFG E   V  
Sbjct  1    MRWIFFGGKGGVGKTTVSAATAVQLSELGKKVLLISTDPAHSLSDSFNQKFGHEPTKVK-  59

Query  86   YSNLSAMEIDPNGSIQDLLASGDSQGDDPLAGLGMG-NMMQDLAFSIPGVDEAMSFAEVL  144
              NLSAMEIDPN  +++       +  + L GL M   ++ +   S+PG+DEA SF E  
Sbjct  60   -ENLSAMEIDPNMELEEYWQEV-QKYMNALLGLRMLEGILAEELASLPGIDEAASFDEFK  117

Query  145  KQVKSLSYEVIVFDTAPTGHTLRFLQFPTVLEKALAKLSQLSSQFGPMLNSILGARGGLP  204
            K +    Y+V+VFDTAPTGHTLR L  PTVL   L K+ +L +Q GP+    LG      
Sbjct  118  KYMDEGEYDVVVFDTAPTGHTLRLLSLPTVLGWYLEKIVKLKNQIGPLAKPFLGM-----  172

Query  205  GGQNIDELLQKMESLRETISEVNTQFKNPDMTTFVCVCIAEFLSLYETERMIQELTSYGI  264
            GG +I E L+ +E  +E I        +P+ T+F  VCI E +SLYETER IQ L  YGI
Sbjct  173  GGVSIPEALESLEETKERIERAREILTDPERTSFRLVCIPEKMSLYETERAIQYLAKYGI  232

Query  265  DTHAIVVNQLLFPKEGSGCEQCNARRKMQKKYLEQIEELYEDFNVVRMPLLVEEVRGKEK  324
            D  A++VNQ+L       C  C AR+K+Q+KYL++IEEL+ DF V ++PLL EEV G EK
Sbjct  233  DVDAVIVNQVLPENVQENCPFCEARKKIQQKYLDEIEELFSDFPVAKLPLLPEEVVGLEK  292

Query  325  LEKFSEMLV  333
            LEKFS+ L 
Sbjct  293  LEKFSKFLY  301



Lambda      K        H        a         alpha
   0.317    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0783    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00027227

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462798 pfam09440, eIF3_N, eIF3 subunit 6 N terminal domain. T...  214     6e-70


>CDD:462798 pfam09440, eIF3_N, eIF3 subunit 6 N terminal domain.  This is 
the N terminal domain of subunit 6 translation initiation factor 
eIF3.
Length=132

 Score = 214 bits (547),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 72/131 (55%), Positives = 105/131 (80%), Gaps = 2/131 (2%)

Query  33   LLPKLIPYLDRHLVFPLLEFSSGQD--DEKEIVRAKYELLKHTNMTDYVANLWKEINNSD  90
            L PKLIPYLDRHLVFPLLEF S ++  DE+++++AKYELLK TNM DY  +L+KE++  +
Sbjct  2    LTPKLIPYLDRHLVFPLLEFLSEKEIYDEEDLLKAKYELLKKTNMVDYAMDLYKELHPGE  61

Query  91   DIPDEFVKKREEVLAKLQQYEEESAKITQLLQDESVVANLRSDKVANLKFLEEQHGVTVE  150
            ++P+E  +KREEVL +L++ EEE+  I +LL+D  VV+NLRSDK  NL++L++ HG+T E
Sbjct  62   EVPEELAEKREEVLEQLEKLEEEAEPILELLEDPEVVSNLRSDKAQNLEYLKKNHGITPE  121

Query  151  MVNSLYDYGRF  161
            M+++LY + +F
Sbjct  122  MIDALYKFAKF  132



Lambda      K        H        a         alpha
   0.317    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00027226

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462798 pfam09440, eIF3_N, eIF3 subunit 6 N terminal domain. T...  214     6e-70


>CDD:462798 pfam09440, eIF3_N, eIF3 subunit 6 N terminal domain.  This is 
the N terminal domain of subunit 6 translation initiation factor 
eIF3.
Length=132

 Score = 214 bits (547),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 72/131 (55%), Positives = 105/131 (80%), Gaps = 2/131 (2%)

Query  33   LLPKLIPYLDRHLVFPLLEFSSGQD--DEKEIVRAKYELLKHTNMTDYVANLWKEINNSD  90
            L PKLIPYLDRHLVFPLLEF S ++  DE+++++AKYELLK TNM DY  +L+KE++  +
Sbjct  2    LTPKLIPYLDRHLVFPLLEFLSEKEIYDEEDLLKAKYELLKKTNMVDYAMDLYKELHPGE  61

Query  91   DIPDEFVKKREEVLAKLQQYEEESAKITQLLQDESVVANLRSDKVANLKFLEEQHGVTVE  150
            ++P+E  +KREEVL +L++ EEE+  I +LL+D  VV+NLRSDK  NL++L++ HG+T E
Sbjct  62   EVPEELAEKREEVLEQLEKLEEEAEPILELLEDPEVVSNLRSDKAQNLEYLKKNHGITPE  121

Query  151  MVNSLYDYGRF  161
            M+++LY + +F
Sbjct  122  MIDALYKFAKF  132



Lambda      K        H        a         alpha
   0.317    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00022618

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396792 pfam02374, ArsA_ATPase, Anion-transporting ATPase. Thi...  103     6e-28


>CDD:396792 pfam02374, ArsA_ATPase, Anion-transporting ATPase.  This Pfam 
family represents a conserved domain, which is sometimes repeated, 
in an anion-transporting ATPase. The ATPase is involved 
in the removal of arsenate, antimonite, and arsenate from 
the cell.
Length=302

 Score = 103 bits (258),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 54/106 (51%), Positives = 70/106 (66%), Gaps = 4/106 (4%)

Query  26   LRWIFVGGKGGVGKTTTSCSLAIQLAKVRKSVLLISTDPAHNLSDAFGQKFGKEARLVDG  85
            +RWIF GGKGGVGKTT S + A+QL+++ K VLLISTDPAH+LSD+F QKFG E   V  
Sbjct  1    MRWIFFGGKGGVGKTTVSAATAVQLSELGKKVLLISTDPAHSLSDSFNQKFGHEPTKVK-  59

Query  86   YSNLSAMEIDPNGSIQDLLASGDSQGDDPLAGLGMG-NMMQDLAFS  130
              NLSAMEIDPN  +++       +  + L GL M   ++ +   S
Sbjct  60   -ENLSAMEIDPNMELEEYWQEV-QKYMNALLGLRMLEGILAEELAS  103



Lambda      K        H        a         alpha
   0.316    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00022619

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462798 pfam09440, eIF3_N, eIF3 subunit 6 N terminal domain. T...  214     6e-70


>CDD:462798 pfam09440, eIF3_N, eIF3 subunit 6 N terminal domain.  This is 
the N terminal domain of subunit 6 translation initiation factor 
eIF3.
Length=132

 Score = 214 bits (547),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 72/131 (55%), Positives = 105/131 (80%), Gaps = 2/131 (2%)

Query  33   LLPKLIPYLDRHLVFPLLEFSSGQD--DEKEIVRAKYELLKHTNMTDYVANLWKEINNSD  90
            L PKLIPYLDRHLVFPLLEF S ++  DE+++++AKYELLK TNM DY  +L+KE++  +
Sbjct  2    LTPKLIPYLDRHLVFPLLEFLSEKEIYDEEDLLKAKYELLKKTNMVDYAMDLYKELHPGE  61

Query  91   DIPDEFVKKREEVLAKLQQYEEESAKITQLLQDESVVANLRSDKVANLKFLEEQHGVTVE  150
            ++P+E  +KREEVL +L++ EEE+  I +LL+D  VV+NLRSDK  NL++L++ HG+T E
Sbjct  62   EVPEELAEKREEVLEQLEKLEEEAEPILELLEDPEVVSNLRSDKAQNLEYLKKNHGITPE  121

Query  151  MVNSLYDYGRF  161
            M+++LY + +F
Sbjct  122  MIDALYKFAKF  132



Lambda      K        H        a         alpha
   0.317    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00022621

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462798 pfam09440, eIF3_N, eIF3 subunit 6 N terminal domain. T...  214     6e-70


>CDD:462798 pfam09440, eIF3_N, eIF3 subunit 6 N terminal domain.  This is 
the N terminal domain of subunit 6 translation initiation factor 
eIF3.
Length=132

 Score = 214 bits (547),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 72/131 (55%), Positives = 105/131 (80%), Gaps = 2/131 (2%)

Query  33   LLPKLIPYLDRHLVFPLLEFSSGQD--DEKEIVRAKYELLKHTNMTDYVANLWKEINNSD  90
            L PKLIPYLDRHLVFPLLEF S ++  DE+++++AKYELLK TNM DY  +L+KE++  +
Sbjct  2    LTPKLIPYLDRHLVFPLLEFLSEKEIYDEEDLLKAKYELLKKTNMVDYAMDLYKELHPGE  61

Query  91   DIPDEFVKKREEVLAKLQQYEEESAKITQLLQDESVVANLRSDKVANLKFLEEQHGVTVE  150
            ++P+E  +KREEVL +L++ EEE+  I +LL+D  VV+NLRSDK  NL++L++ HG+T E
Sbjct  62   EVPEELAEKREEVLEQLEKLEEEAEPILELLEDPEVVSNLRSDKAQNLEYLKKNHGITPE  121

Query  151  MVNSLYDYGRF  161
            M+++LY + +F
Sbjct  122  MIDALYKFAKF  132



Lambda      K        H        a         alpha
   0.317    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00027228

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462798 pfam09440, eIF3_N, eIF3 subunit 6 N terminal domain. T...  214     6e-70


>CDD:462798 pfam09440, eIF3_N, eIF3 subunit 6 N terminal domain.  This is 
the N terminal domain of subunit 6 translation initiation factor 
eIF3.
Length=132

 Score = 214 bits (547),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 72/131 (55%), Positives = 105/131 (80%), Gaps = 2/131 (2%)

Query  33   LLPKLIPYLDRHLVFPLLEFSSGQD--DEKEIVRAKYELLKHTNMTDYVANLWKEINNSD  90
            L PKLIPYLDRHLVFPLLEF S ++  DE+++++AKYELLK TNM DY  +L+KE++  +
Sbjct  2    LTPKLIPYLDRHLVFPLLEFLSEKEIYDEEDLLKAKYELLKKTNMVDYAMDLYKELHPGE  61

Query  91   DIPDEFVKKREEVLAKLQQYEEESAKITQLLQDESVVANLRSDKVANLKFLEEQHGVTVE  150
            ++P+E  +KREEVL +L++ EEE+  I +LL+D  VV+NLRSDK  NL++L++ HG+T E
Sbjct  62   EVPEELAEKREEVLEQLEKLEEEAEPILELLEDPEVVSNLRSDKAQNLEYLKKNHGITPE  121

Query  151  MVNSLYDYGRF  161
            M+++LY + +F
Sbjct  122  MIDALYKFAKF  132



Lambda      K        H        a         alpha
   0.317    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00022622

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462798 pfam09440, eIF3_N, eIF3 subunit 6 N terminal domain. T...  214     6e-70


>CDD:462798 pfam09440, eIF3_N, eIF3 subunit 6 N terminal domain.  This is 
the N terminal domain of subunit 6 translation initiation factor 
eIF3.
Length=132

 Score = 214 bits (547),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 72/131 (55%), Positives = 105/131 (80%), Gaps = 2/131 (2%)

Query  33   LLPKLIPYLDRHLVFPLLEFSSGQD--DEKEIVRAKYELLKHTNMTDYVANLWKEINNSD  90
            L PKLIPYLDRHLVFPLLEF S ++  DE+++++AKYELLK TNM DY  +L+KE++  +
Sbjct  2    LTPKLIPYLDRHLVFPLLEFLSEKEIYDEEDLLKAKYELLKKTNMVDYAMDLYKELHPGE  61

Query  91   DIPDEFVKKREEVLAKLQQYEEESAKITQLLQDESVVANLRSDKVANLKFLEEQHGVTVE  150
            ++P+E  +KREEVL +L++ EEE+  I +LL+D  VV+NLRSDK  NL++L++ HG+T E
Sbjct  62   EVPEELAEKREEVLEQLEKLEEEAEPILELLEDPEVVSNLRSDKAQNLEYLKKNHGITPE  121

Query  151  MVNSLYDYGRF  161
            M+++LY + +F
Sbjct  122  MIDALYKFAKF  132



Lambda      K        H        a         alpha
   0.317    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00022623

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00027229

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00022624

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00022626

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461535 pfam05046, Img2, Mitochondrial large subunit ribosomal...  103     6e-29


>CDD:461535 pfam05046, Img2, Mitochondrial large subunit ribosomal protein 
(Img2).  This family of proteins have been identified as part 
of the mitochondrial large ribosomal subunit in yeast.
Length=83

 Score = 103 bits (260),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 8/75 (11%)

Query  188  LPYFIRRTASNQLPVYLVTKAGGTKQQTKIQKTEGDLEALRSDLARYLGLESGDPRAPKS  247
            LPYF+RRT S  LPVY   K GG ++ T I+K EGD+ ALR DL + LGL          
Sbjct  1    LPYFVRRTRSGNLPVYTDIKNGGNRKLTVIRKIEGDIWALRKDLKKALGL--------IP  52

Query  248  PDVTINRLNGHIIVK  262
             DV +N + GHI +K
Sbjct  53   EDVRVNEVTGHIEIK  67



Lambda      K        H        a         alpha
   0.321    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00027230

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461535 pfam05046, Img2, Mitochondrial large subunit ribosomal...  128     1e-38


>CDD:461535 pfam05046, Img2, Mitochondrial large subunit ribosomal protein 
(Img2).  This family of proteins have been identified as part 
of the mitochondrial large ribosomal subunit in yeast.
Length=83

 Score = 128 bits (325),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 56/91 (62%), Gaps = 8/91 (9%)

Query  188  LPYFIRRTASNQLPVYLVTKAGGTKQQTKIQKTEGDLEALRSDLARYLGLESGDPRAPKS  247
            LPYF+RRT S  LPVY   K GG ++ T I+K EGD+ ALR DL + LGL          
Sbjct  1    LPYFVRRTRSGNLPVYTDIKNGGNRKLTVIRKIEGDIWALRKDLKKALGL--------IP  52

Query  248  PDVTINRLNGHIIVKGWRKPEIQKFLLERNF  278
             DV +N + GHI +KG    E++K+LLE+ F
Sbjct  53   EDVRVNEVTGHIEIKGDHVNEVKKWLLEKGF  83



Lambda      K        H        a         alpha
   0.319    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00022627

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461535 pfam05046, Img2, Mitochondrial large subunit ribosomal...  103     6e-29


>CDD:461535 pfam05046, Img2, Mitochondrial large subunit ribosomal protein 
(Img2).  This family of proteins have been identified as part 
of the mitochondrial large ribosomal subunit in yeast.
Length=83

 Score = 103 bits (260),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 8/75 (11%)

Query  191  LPYFIRRTASNQLPVYLVTKAGGTKQQTKIQKTEGDLEALRSDLARYLGLESGDPRAPKS  250
            LPYF+RRT S  LPVY   K GG ++ T I+K EGD+ ALR DL + LGL          
Sbjct  1    LPYFVRRTRSGNLPVYTDIKNGGNRKLTVIRKIEGDIWALRKDLKKALGL--------IP  52

Query  251  PDVTINRLNGHIIVK  265
             DV +N + GHI +K
Sbjct  53   EDVRVNEVTGHIEIK  67



Lambda      K        H        a         alpha
   0.321    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00022625

Length=981
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460187 pfam01388, ARID, ARID/BRIGHT DNA binding domain. This ...  121     2e-33


>CDD:460187 pfam01388, ARID, ARID/BRIGHT DNA binding domain.  This domain 
is know as ARID for AT-Rich Interaction Domain, and also known 
as the BRIGHT domain.
Length=87

 Score = 121 bits (306),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 35/86 (41%), Positives = 54/86 (63%), Gaps = 1/86 (1%)

Query  289  EGFMRSLQKFMMSRNLPLDPNPIVCGRPINLVQLYATVMKLGGSKKVSAANMWPVVAQQL  348
            E F++SL+KF   R  PL   P++ G+P++L +LY  V KLGG  KV+  N+W  VA++L
Sbjct  3    ELFLKSLRKFHEKRGTPLKQIPVIGGKPVDLYKLYKAVQKLGGYDKVTEKNLWREVAEKL  62

Query  349  QFPPMQFPMAVQEIREHYQRNLAAYE  374
             FPP     A  ++++ Y++ L  YE
Sbjct  63   GFPPSA-ASAATQLKQIYEKYLLPYE  87



Lambda      K        H        a         alpha
   0.316    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1253050260


Query= TCONS_00022629

Length=981
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460187 pfam01388, ARID, ARID/BRIGHT DNA binding domain. This ...  121     2e-33


>CDD:460187 pfam01388, ARID, ARID/BRIGHT DNA binding domain.  This domain 
is know as ARID for AT-Rich Interaction Domain, and also known 
as the BRIGHT domain.
Length=87

 Score = 121 bits (306),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 35/86 (41%), Positives = 54/86 (63%), Gaps = 1/86 (1%)

Query  289  EGFMRSLQKFMMSRNLPLDPNPIVCGRPINLVQLYATVMKLGGSKKVSAANMWPVVAQQL  348
            E F++SL+KF   R  PL   P++ G+P++L +LY  V KLGG  KV+  N+W  VA++L
Sbjct  3    ELFLKSLRKFHEKRGTPLKQIPVIGGKPVDLYKLYKAVQKLGGYDKVTEKNLWREVAEKL  62

Query  349  QFPPMQFPMAVQEIREHYQRNLAAYE  374
             FPP     A  ++++ Y++ L  YE
Sbjct  63   GFPPSA-ASAATQLKQIYEKYLLPYE  87



Lambda      K        H        a         alpha
   0.316    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1253050260


Query= TCONS_00022630

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  178     4e-55
CDD:465118 pfam16450, Prot_ATP_ID_OB, Proteasomal ATPase OB/ID do...  60.6    1e-12
CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily...  58.1    6e-11
CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This P...  58.7    8e-11


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 178 bits (453),  Expect = 4e-55, Method: Composition-based stats.
 Identities = 73/134 (54%), Positives = 92/134 (69%), Gaps = 6/134 (4%)

Query  202  VLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAI  261
            +LLYGPPGTGKT L KAVA    A FI ++GSE V KY+GE  + +R++F  A++ +P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  262  IFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQ-TSNVKVIMATNRADTLDPA  320
            IFIDEIDA+A  R     G D E +R++ +LL ++DGF    S V VI ATNR D LDPA
Sbjct  61   IFIDEIDALAGSRGS---GGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPA  117

Query  321  LLRPGRLDRKIEFP  334
            LL  GR DR IEFP
Sbjct  118  LL--GRFDRIIEFP  129


>CDD:465118 pfam16450, Prot_ATP_ID_OB, Proteasomal ATPase OB/ID domain.  
This is the interdomain (ID) or oligonucleotide binding (OB) 
domain of proteasomal ATPase.
Length=56

 Score = 60.6 bits (148),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 20/56 (36%), Positives = 31/56 (55%), Gaps = 0/56 (0%)

Query  89   IGQFMEAIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILP  144
            +   +E +D    +V+SS G   VVR+  +LD EKL+P   V L   S   +++LP
Sbjct  1    VATVVEVLDDGRALVKSSGGEERVVRLAGSLDEEKLRPGDRVLLDPRSGYALEVLP  56


>CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily).  This 
Pfam entry includes some of the AAA proteins not detected 
by the pfam00004 model.
Length=135

 Score = 58.1 bits (141),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 55/146 (38%), Gaps = 36/146 (25%)

Query  201  GVLLYGPPGTGKTMLVKAVANSTT-ASFIRVNGS------EFVQKYL--GEGPRMVRDVF  251
            GVLL GPPGTGKT L + +A + +      V  +      +   +      G   V    
Sbjct  1    GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLFGRRNIDPGGASWVDGPL  60

Query  252  -RMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLN-----QMDGFEQTS--  303
             R ARE    I  +DEI+            A+ +V   LL LL+       DG E     
Sbjct  61   VRAARE--GEIAVLDEINR-----------ANPDVLNSLLSLLDERRLLLPDGGELVKAA  107

Query  304  --NVKVIMATNRADT----LDPALLR  323
                ++I   N  D     L PAL  
Sbjct  108  PDGFRLIATMNPLDRGLNELSPALRS  133


>CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily).  This Pfam entry 
includes some of the AAA proteins not detected by the pfam00004 
model.
Length=168

 Score = 58.7 bits (143),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 30/130 (23%)

Query  202  VLLYGPPGTGKTMLVKAVANS---TTASFIRVNGSEFVQKYL-----GEGPRMVR-----  248
             L  GP G GKT L KA+A        + IR++ SE+++++      G  P  V      
Sbjct  6    FLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGG  65

Query  249  DVFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQ---MDGFEQ---T  302
             +    R    +I+ IDEI+                VQ  LL++L      D   +    
Sbjct  66   QLTEAVRRKPYSIVLIDEIEKAH-----------PGVQNDLLQILEGGTLTDKQGRTVDF  114

Query  303  SNVKVIMATN  312
             N   IM  N
Sbjct  115  KNTLFIMTGN  124



Lambda      K        H        a         alpha
   0.317    0.134    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 575139000


Query= TCONS_00027231

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465118 pfam16450, Prot_ATP_ID_OB, Proteasomal ATPase OB/ID do...  59.1    7e-13


>CDD:465118 pfam16450, Prot_ATP_ID_OB, Proteasomal ATPase OB/ID domain.  
This is the interdomain (ID) or oligonucleotide binding (OB) 
domain of proteasomal ATPase.
Length=56

 Score = 59.1 bits (144),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 20/56 (36%), Positives = 31/56 (55%), Gaps = 0/56 (0%)

Query  89   IGQFMEAIDQKYGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILP  144
            +   +E +D    +V+SS G   VVR+  +LD EKL+P   V L   S   +++LP
Sbjct  1    VATVVEVLDDGRALVKSSGGEERVVRLAGSLDEEKLRPGDRVLLDPRSGYALEVLP  56



Lambda      K        H        a         alpha
   0.313    0.132    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00022631

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  177     3e-55
CDD:465118 pfam16450, Prot_ATP_ID_OB, Proteasomal ATPase OB/ID do...  59.8    2e-12


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 177 bits (451),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 73/134 (54%), Positives = 92/134 (69%), Gaps = 6/134 (4%)

Query  202  VLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAI  261
            +LLYGPPGTGKT L KAVA    A FI ++GSE V KY+GE  + +R++F  A++ +P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  262  IFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQ-TSNVKVIMATNRADTLDPA  320
            IFIDEIDA+A  R     G D E +R++ +LL ++DGF    S V VI ATNR D LDPA
Sbjct  61   IFIDEIDALAGSRGS---GGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPA  117

Query  321  LLRPGRLDRKIEFP  334
            LL  GR DR IEFP
Sbjct  118  LL--GRFDRIIEFP  129


>CDD:465118 pfam16450, Prot_ATP_ID_OB, Proteasomal ATPase OB/ID domain.  
This is the interdomain (ID) or oligonucleotide binding (OB) 
domain of proteasomal ATPase.
Length=56

 Score = 59.8 bits (146),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 20/56 (36%), Positives = 31/56 (55%), Gaps = 0/56 (0%)

Query  89   IGQFMEAIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILP  144
            +   +E +D    +V+SS G   VVR+  +LD EKL+P   V L   S   +++LP
Sbjct  1    VATVVEVLDDGRALVKSSGGEERVVRLAGSLDEEKLRPGDRVLLDPRSGYALEVLP  56



Lambda      K        H        a         alpha
   0.316    0.134    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00027232

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465118 pfam16450, Prot_ATP_ID_OB, Proteasomal ATPase OB/ID do...  60.6    2e-13


>CDD:465118 pfam16450, Prot_ATP_ID_OB, Proteasomal ATPase OB/ID domain.  
This is the interdomain (ID) or oligonucleotide binding (OB) 
domain of proteasomal ATPase.
Length=56

 Score = 60.6 bits (148),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 20/56 (36%), Positives = 31/56 (55%), Gaps = 0/56 (0%)

Query  89   IGQFMEAIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILP  144
            +   +E +D    +V+SS G   VVR+  +LD EKL+P   V L   S   +++LP
Sbjct  1    VATVVEVLDDGRALVKSSGGEERVVRLAGSLDEEKLRPGDRVLLDPRSGYALEVLP  56



Lambda      K        H        a         alpha
   0.312    0.129    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00022632

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460754 pfam02934, GatB_N, GatB/GatE catalytic domain. This do...  196     2e-61
CDD:396969 pfam02637, GatB_Yqey, GatB domain. This domain is foun...  96.1    1e-24


>CDD:460754 pfam02934, GatB_N, GatB/GatE catalytic domain.  This domain is 
found in the GatB and GatE proteins.
Length=284

 Score = 196 bits (501),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 64/141 (45%), Positives = 83/141 (59%), Gaps = 10/141 (7%)

Query  2    PQIHNPATAAACVRKIQAVLQSCSAVTTGMELGGLRADVNVSIRRRDEAPGTHQYGGIGG  61
            P I +P  A A ++K++++L+        ME G LR DVNVS+R +              
Sbjct  153  PDIRSPEEARAYLKKLRSILRYLGVSDGNMEEGSLRCDVNVSVRPKGSEE----------  202

Query  62   LGQRTEIKNLSSFKAVEDAVIAEKNRQIAVLESGGVIEGETRGWTIGSTETRKLRGKEGE  121
            LG R EIKNL+SF+ VE A+  E  RQI +LESGG I  ETRGW     ETR +R KE  
Sbjct  203  LGTRVEIKNLNSFRFVEKAIEYEIERQIELLESGGKIRQETRGWDEDKGETRSMRSKEEA  262

Query  122  VDYRYMPDPDLPPLIIGHDLI  142
             DYRY P+PDLPP++I  + I
Sbjct  263  HDYRYFPEPDLPPIVISEEWI  283


>CDD:396969 pfam02637, GatB_Yqey, GatB domain.  This domain is found in GatB. 
It is about 140 amino acid residues long. This domain is 
found at the C-terminus of GatB, which transamidates Glu-tRNA 
to Gln-tRNA.
Length=148

 Score = 96.1 bits (240),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 6/144 (4%)

Query  207  GGLARMAGNWVLHELGGLCTKADLAWDAQRVPAETLAQIIDQLQRKRITGATAKQVLAMV  266
            G   ++A NW+L EL G   K  L  D   +  E LA++I  +    I+G  AK+VL  +
Sbjct  10   GADPKLAANWLLGELLGYLNKEGLDIDESPLTPEHLAELIKLIDEGTISGKIAKEVLEEL  69

Query  267  FDGDRRPVPQLLEEENLLLRPLSRDEYL-ALAEAAIGQNPQMVEQIRAKNQLGKLGWFVG  325
             +  + P       E   L+ +S +E L  + +  I +NP+ VE  ++  +   LG+ VG
Sbjct  70   LENGKSP---EEIVEEKGLKQISDEEELEKIVDEVIAENPKAVEDYKSGKE-KALGFLVG  125

Query  326  QMMRMGEKGRVEAQKADEILRELI  349
            Q+M+   +G+ + +  +E+L+E +
Sbjct  126  QVMKK-TRGKADPKLVNELLKEKL  148



Lambda      K        H        a         alpha
   0.316    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00027233

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  178     4e-55
CDD:465118 pfam16450, Prot_ATP_ID_OB, Proteasomal ATPase OB/ID do...  60.6    1e-12
CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily...  58.1    6e-11
CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This P...  58.7    8e-11


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 178 bits (453),  Expect = 4e-55, Method: Composition-based stats.
 Identities = 73/134 (54%), Positives = 92/134 (69%), Gaps = 6/134 (4%)

Query  202  VLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAI  261
            +LLYGPPGTGKT L KAVA    A FI ++GSE V KY+GE  + +R++F  A++ +P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  262  IFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQ-TSNVKVIMATNRADTLDPA  320
            IFIDEIDA+A  R     G D E +R++ +LL ++DGF    S V VI ATNR D LDPA
Sbjct  61   IFIDEIDALAGSRGS---GGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPA  117

Query  321  LLRPGRLDRKIEFP  334
            LL  GR DR IEFP
Sbjct  118  LL--GRFDRIIEFP  129


>CDD:465118 pfam16450, Prot_ATP_ID_OB, Proteasomal ATPase OB/ID domain.  
This is the interdomain (ID) or oligonucleotide binding (OB) 
domain of proteasomal ATPase.
Length=56

 Score = 60.6 bits (148),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 20/56 (36%), Positives = 31/56 (55%), Gaps = 0/56 (0%)

Query  89   IGQFMEAIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILP  144
            +   +E +D    +V+SS G   VVR+  +LD EKL+P   V L   S   +++LP
Sbjct  1    VATVVEVLDDGRALVKSSGGEERVVRLAGSLDEEKLRPGDRVLLDPRSGYALEVLP  56


>CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily).  This 
Pfam entry includes some of the AAA proteins not detected 
by the pfam00004 model.
Length=135

 Score = 58.1 bits (141),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 55/146 (38%), Gaps = 36/146 (25%)

Query  201  GVLLYGPPGTGKTMLVKAVANSTT-ASFIRVNGS------EFVQKYL--GEGPRMVRDVF  251
            GVLL GPPGTGKT L + +A + +      V  +      +   +      G   V    
Sbjct  1    GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLFGRRNIDPGGASWVDGPL  60

Query  252  -RMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLN-----QMDGFEQTS--  303
             R ARE    I  +DEI+            A+ +V   LL LL+       DG E     
Sbjct  61   VRAARE--GEIAVLDEINR-----------ANPDVLNSLLSLLDERRLLLPDGGELVKAA  107

Query  304  --NVKVIMATNRADT----LDPALLR  323
                ++I   N  D     L PAL  
Sbjct  108  PDGFRLIATMNPLDRGLNELSPALRS  133


>CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily).  This Pfam entry 
includes some of the AAA proteins not detected by the pfam00004 
model.
Length=168

 Score = 58.7 bits (143),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 30/130 (23%)

Query  202  VLLYGPPGTGKTMLVKAVANS---TTASFIRVNGSEFVQKYL-----GEGPRMVR-----  248
             L  GP G GKT L KA+A        + IR++ SE+++++      G  P  V      
Sbjct  6    FLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGG  65

Query  249  DVFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQ---MDGFEQ---T  302
             +    R    +I+ IDEI+                VQ  LL++L      D   +    
Sbjct  66   QLTEAVRRKPYSIVLIDEIEKAH-----------PGVQNDLLQILEGGTLTDKQGRTVDF  114

Query  303  SNVKVIMATN  312
             N   IM  N
Sbjct  115  KNTLFIMTGN  124



Lambda      K        H        a         alpha
   0.317    0.134    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 575139000


Query= TCONS_00027234

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  178     4e-55
CDD:465118 pfam16450, Prot_ATP_ID_OB, Proteasomal ATPase OB/ID do...  60.6    1e-12
CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily...  58.1    6e-11
CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This P...  58.7    8e-11


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 178 bits (453),  Expect = 4e-55, Method: Composition-based stats.
 Identities = 73/134 (54%), Positives = 92/134 (69%), Gaps = 6/134 (4%)

Query  202  VLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAI  261
            +LLYGPPGTGKT L KAVA    A FI ++GSE V KY+GE  + +R++F  A++ +P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  262  IFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQ-TSNVKVIMATNRADTLDPA  320
            IFIDEIDA+A  R     G D E +R++ +LL ++DGF    S V VI ATNR D LDPA
Sbjct  61   IFIDEIDALAGSRGS---GGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPA  117

Query  321  LLRPGRLDRKIEFP  334
            LL  GR DR IEFP
Sbjct  118  LL--GRFDRIIEFP  129


>CDD:465118 pfam16450, Prot_ATP_ID_OB, Proteasomal ATPase OB/ID domain.  
This is the interdomain (ID) or oligonucleotide binding (OB) 
domain of proteasomal ATPase.
Length=56

 Score = 60.6 bits (148),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 20/56 (36%), Positives = 31/56 (55%), Gaps = 0/56 (0%)

Query  89   IGQFMEAIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILP  144
            +   +E +D    +V+SS G   VVR+  +LD EKL+P   V L   S   +++LP
Sbjct  1    VATVVEVLDDGRALVKSSGGEERVVRLAGSLDEEKLRPGDRVLLDPRSGYALEVLP  56


>CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily).  This 
Pfam entry includes some of the AAA proteins not detected 
by the pfam00004 model.
Length=135

 Score = 58.1 bits (141),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 55/146 (38%), Gaps = 36/146 (25%)

Query  201  GVLLYGPPGTGKTMLVKAVANSTT-ASFIRVNGS------EFVQKYL--GEGPRMVRDVF  251
            GVLL GPPGTGKT L + +A + +      V  +      +   +      G   V    
Sbjct  1    GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLFGRRNIDPGGASWVDGPL  60

Query  252  -RMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLN-----QMDGFEQTS--  303
             R ARE    I  +DEI+            A+ +V   LL LL+       DG E     
Sbjct  61   VRAARE--GEIAVLDEINR-----------ANPDVLNSLLSLLDERRLLLPDGGELVKAA  107

Query  304  --NVKVIMATNRADT----LDPALLR  323
                ++I   N  D     L PAL  
Sbjct  108  PDGFRLIATMNPLDRGLNELSPALRS  133


>CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily).  This Pfam entry 
includes some of the AAA proteins not detected by the pfam00004 
model.
Length=168

 Score = 58.7 bits (143),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 30/130 (23%)

Query  202  VLLYGPPGTGKTMLVKAVANS---TTASFIRVNGSEFVQKYL-----GEGPRMVR-----  248
             L  GP G GKT L KA+A        + IR++ SE+++++      G  P  V      
Sbjct  6    FLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGG  65

Query  249  DVFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQ---MDGFEQ---T  302
             +    R    +I+ IDEI+                VQ  LL++L      D   +    
Sbjct  66   QLTEAVRRKPYSIVLIDEIEKAH-----------PGVQNDLLQILEGGTLTDKQGRTVDF  114

Query  303  SNVKVIMATN  312
             N   IM  N
Sbjct  115  KNTLFIMTGN  124



Lambda      K        H        a         alpha
   0.317    0.134    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 575139000


Query= TCONS_00027235

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease. Aspartyl...  330     4e-113
CDD:464203 pfam14543, TAXi_N, Xylanase inhibitor N-terminal. The ...  73.8    3e-16 


>CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease.  Aspartyl (acid) 
proteases include pepsins, cathepsins, and renins. Two-domain 
structure, probably arising from ancestral duplication. 
This family does not include the retroviral nor retrotransposon 
proteases (pfam00077), which are much smaller and appear 
to be homologous to a single domain of the eukaryotic asp proteases.
Length=313

 Score = 330 bits (848),  Expect = 4e-113, Method: Composition-based stats.
 Identities = 132/294 (45%), Positives = 177/294 (60%), Gaps = 11/294 (4%)

Query  84   QYFSEISLGTPPQKFKVVLDTGSSNLWVPGSDCS-SIACFLHNKYDSSASSTYKANGTEF  142
            +YF  IS+GTPPQKF V+ DTGSS+LWVP S C+ S AC  H  +D S+SSTYK NGT F
Sbjct  1    EYFGTISIGTPPQKFTVIFDTGSSDLWVPSSYCTKSSACKSHGTFDPSSSSTYKLNGTTF  60

Query  143  AIKYGSGELSGFVSQDTLQIGDLKVVKQDFAEATNEPGLAFAFGRFDGILGLGYDTISVN  202
            +I YG G  SGF+ QDT+ +G L +  Q+F  AT EPG  F + +FDGILGLG+ +IS  
Sbjct  61   SISYGDGSASGFLGQDTVTVGGLTITNQEFGLATKEPGSFFEYAKFDGILGLGFPSISAV  120

Query  203  KIVPPFYNMLDQGLLDEPVFAFYLGDTNKEGDNSEASFGGVDKNHYTGELTKIPLRRKAY  262
               P F N+  QGL+D P F+ YL   +  G   E  FGGVD + YTG LT +P+  + Y
Sbjct  121  GATPVFDNLKSQGLIDSPAFSVYLNSPDAAG--GEIIFGGVDPSKYTGSLTYVPVTSQGY  178

Query  263  WEVDFDAIALGD-NVAELENTGIILDTGTSLIALPSTLADLLNKEIGAKKGFTGQYSIEC  321
            W++  D++ +G    A       ILDTGTSL+  P+++   + K +GA     G+Y ++C
Sbjct  179  WQITLDSVTVGGSTSACSSGCQAILDTGTSLLYGPTSIVSKIAKAVGASSSEYGEYVVDC  238

Query  322  DKRDSLPDLTFTLAGHNFTIGPYDYTLEVQGS---CISSFMGMDFPEPVGPLAI  372
            D   +LPD+TF + G   T+ P  Y L+       C+S F     P P GPL I
Sbjct  239  DSISTLPDITFVIGGAKITVPPSAYVLQNSQGGSTCLSGFQ----PPPGGPLWI  288


>CDD:464203 pfam14543, TAXi_N, Xylanase inhibitor N-terminal.  The N- and 
C-termini of the members of this family are jointly necessary 
for creating the catalytic pocket necessary for cleaving 
xylanase. Phytopathogens produce xylanase that destroys plant 
cells, so its destruction through proteolysis is vital for 
plant-survival.
Length=172

 Score = 73.8 bits (182),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 42/151 (28%), Positives = 56/151 (37%), Gaps = 45/151 (30%)

Query  85   YFSEISLGTPPQKFKVVLDTGSSNLWVPGSDCSSIACFLHNK--YDSSASSTYKA-----  137
            Y   IS+GTPP  F +V+DTGS   WV    C    C+      +D   SSTYK      
Sbjct  1    YLVTISIGTPPVPFFLVVDTGSDLTWV---QCDPC-CYSQPDPLFDPYKSSTYKPVPCSS  56

Query  138  ----------------NGT-EFAIKYGSGELS-GFVSQDTLQIGDLKVVKQDFAEATNEP  179
                            N T ++ + YG G  + G ++ DTL +                P
Sbjct  57   PLCSLIALSSPGPCCSNNTCDYEVSYGDGSSTSGVLATDTLTLNSTGGSVSV-------P  109

Query  180  GLAFA---------FGRFDGILGLGYDTISV  201
               F              DGILGLG   +S+
Sbjct  110  NFVFGCGYNLLGGLPAGADGILGLGRGKLSL  140



Lambda      K        H        a         alpha
   0.316    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 446726320


Query= TCONS_00027236

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  87.6    2e-22
CDD:465118 pfam16450, Prot_ATP_ID_OB, Proteasomal ATPase OB/ID do...  60.6    4e-13


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 87.6 bits (218),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 30/53 (57%), Positives = 38/53 (72%), Gaps = 0/53 (0%)

Query  202  VLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMA  254
            +LLYGPPGTGKT L KAVA    A FI ++GSE V KY+GE  + +R++F  A
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAA  53


>CDD:465118 pfam16450, Prot_ATP_ID_OB, Proteasomal ATPase OB/ID domain.  
This is the interdomain (ID) or oligonucleotide binding (OB) 
domain of proteasomal ATPase.
Length=56

 Score = 60.6 bits (148),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 20/56 (36%), Positives = 31/56 (55%), Gaps = 0/56 (0%)

Query  89   IGQFMEAIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILP  144
            +   +E +D    +V+SS G   VVR+  +LD EKL+P   V L   S   +++LP
Sbjct  1    VATVVEVLDDGRALVKSSGGEERVVRLAGSLDEEKLRPGDRVLLDPRSGYALEVLP  56



Lambda      K        H        a         alpha
   0.315    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00022633

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  178     4e-55
CDD:465118 pfam16450, Prot_ATP_ID_OB, Proteasomal ATPase OB/ID do...  60.6    1e-12
CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily...  58.1    6e-11
CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This P...  58.7    8e-11


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 178 bits (453),  Expect = 4e-55, Method: Composition-based stats.
 Identities = 73/134 (54%), Positives = 92/134 (69%), Gaps = 6/134 (4%)

Query  202  VLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAI  261
            +LLYGPPGTGKT L KAVA    A FI ++GSE V KY+GE  + +R++F  A++ +P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  262  IFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQ-TSNVKVIMATNRADTLDPA  320
            IFIDEIDA+A  R     G D E +R++ +LL ++DGF    S V VI ATNR D LDPA
Sbjct  61   IFIDEIDALAGSRGS---GGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPA  117

Query  321  LLRPGRLDRKIEFP  334
            LL  GR DR IEFP
Sbjct  118  LL--GRFDRIIEFP  129


>CDD:465118 pfam16450, Prot_ATP_ID_OB, Proteasomal ATPase OB/ID domain.  
This is the interdomain (ID) or oligonucleotide binding (OB) 
domain of proteasomal ATPase.
Length=56

 Score = 60.6 bits (148),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 20/56 (36%), Positives = 31/56 (55%), Gaps = 0/56 (0%)

Query  89   IGQFMEAIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILP  144
            +   +E +D    +V+SS G   VVR+  +LD EKL+P   V L   S   +++LP
Sbjct  1    VATVVEVLDDGRALVKSSGGEERVVRLAGSLDEEKLRPGDRVLLDPRSGYALEVLP  56


>CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily).  This 
Pfam entry includes some of the AAA proteins not detected 
by the pfam00004 model.
Length=135

 Score = 58.1 bits (141),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 55/146 (38%), Gaps = 36/146 (25%)

Query  201  GVLLYGPPGTGKTMLVKAVANSTT-ASFIRVNGS------EFVQKYL--GEGPRMVRDVF  251
            GVLL GPPGTGKT L + +A + +      V  +      +   +      G   V    
Sbjct  1    GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLFGRRNIDPGGASWVDGPL  60

Query  252  -RMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLN-----QMDGFEQTS--  303
             R ARE    I  +DEI+            A+ +V   LL LL+       DG E     
Sbjct  61   VRAARE--GEIAVLDEINR-----------ANPDVLNSLLSLLDERRLLLPDGGELVKAA  107

Query  304  --NVKVIMATNRADT----LDPALLR  323
                ++I   N  D     L PAL  
Sbjct  108  PDGFRLIATMNPLDRGLNELSPALRS  133


>CDD:400187 pfam07724, AAA_2, AAA domain (Cdc48 subfamily).  This Pfam entry 
includes some of the AAA proteins not detected by the pfam00004 
model.
Length=168

 Score = 58.7 bits (143),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 30/130 (23%)

Query  202  VLLYGPPGTGKTMLVKAVANS---TTASFIRVNGSEFVQKYL-----GEGPRMVR-----  248
             L  GP G GKT L KA+A        + IR++ SE+++++      G  P  V      
Sbjct  6    FLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGG  65

Query  249  DVFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQ---MDGFEQ---T  302
             +    R    +I+ IDEI+                VQ  LL++L      D   +    
Sbjct  66   QLTEAVRRKPYSIVLIDEIEKAH-----------PGVQNDLLQILEGGTLTDKQGRTVDF  114

Query  303  SNVKVIMATN  312
             N   IM  N
Sbjct  115  KNTLFIMTGN  124



Lambda      K        H        a         alpha
   0.317    0.134    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 575139000


Query= TCONS_00027237

Length=827
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  113     8e-30


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 113 bits (286),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 31/172 (18%)

Query  160  LSLVVDLDQTIIHATVDPTVGEWMEDKDNPNHDALGDVRAFQLVDDGPGMRGCWYYVKLR  219
             +LV+DLD+T++H++ +P +                    F L   G        YVK R
Sbjct  1    KTLVLDLDETLVHSSFEPPLKSD-----------------FILPVPG---ETHGGYVKKR  40

Query  220  PGLESFLQNVSELFELHIYTMGTRAYAQHIAGIIDPDRKLFGDRILSRDES---GSLTAK  276
            PGL+ FL+ +S+ +E+ I+T  ++ YA  +  I+DP+ KLF  R L R+       +  K
Sbjct  41   PGLDEFLKELSKYYEIVIFTASSKEYADPVLDILDPNGKLFSHR-LYRESCKFEDGVYVK  99

Query  277  NLQRLFPVDTKMVVIIDDRGDVWRWSP-NLIKVSPYDFFVGIGDINSSFLPK  327
            +L  L   D   VVI+D+  D +   P N I + P+      GD + + L K
Sbjct  100  DLSLLGR-DLSRVVIVDNSPDSFLLQPDNGIPIPPF-----FGDPDDNELLK  145



Lambda      K        H        a         alpha
   0.312    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050796248


Query= TCONS_00022634

Length=721
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  113     9e-30


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 113 bits (285),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 31/172 (18%)

Query  160  LSLVVDLDQTIIHATVDPTVGEWMEDKDNPNHDALGDVRAFQLVDDGPGMRGCWYYVKLR  219
             +LV+DLD+T++H++ +P +                    F L   G        YVK R
Sbjct  1    KTLVLDLDETLVHSSFEPPLKSD-----------------FILPVPG---ETHGGYVKKR  40

Query  220  PGLESFLQNVSELFELHIYTMGTRAYAQHIAGIIDPDRKLFGDRILSRDES---GSLTAK  276
            PGL+ FL+ +S+ +E+ I+T  ++ YA  +  I+DP+ KLF  R L R+       +  K
Sbjct  41   PGLDEFLKELSKYYEIVIFTASSKEYADPVLDILDPNGKLFSHR-LYRESCKFEDGVYVK  99

Query  277  NLQRLFPVDTKMVVIIDDRGDVWRWSP-NLIKVSPYDFFVGIGDINSSFLPK  327
            +L  L   D   VVI+D+  D +   P N I + P+      GD + + L K
Sbjct  100  DLSLLGR-DLSRVVIVDNSPDSFLLQPDNGIPIPPF-----FGDPDDNELLK  145



Lambda      K        H        a         alpha
   0.314    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0716    0.140     1.90     42.6     43.6 

Effective search space used: 912380304


Query= TCONS_00027239

Length=708
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatas...  113     8e-30


>CDD:397254 pfam03031, NIF, NLI interacting factor-like phosphatase.  This 
family contains a number of NLI interacting factor isoforms 
and also an N-terminal regions of RNA polymerase II CTC phosphatase 
and FCP1 serine phosphatase. This region has been 
identified as the minimal phosphatase domain.
Length=160

 Score = 113 bits (286),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 31/172 (18%)

Query  41   LSLVVDLDQTIIHATVDPTVGEWMEDKDNPNHDALGDVRAFQLVDDGPGMRGCWYYVKLR  100
             +LV+DLD+T++H++ +P +                    F L   G        YVK R
Sbjct  1    KTLVLDLDETLVHSSFEPPLKSD-----------------FILPVPG---ETHGGYVKKR  40

Query  101  PGLESFLQNVSELFELHIYTMGTRAYAQHIAGIIDPDRKLFGDRILSRDES---GSLTAK  157
            PGL+ FL+ +S+ +E+ I+T  ++ YA  +  I+DP+ KLF  R L R+       +  K
Sbjct  41   PGLDEFLKELSKYYEIVIFTASSKEYADPVLDILDPNGKLFSHR-LYRESCKFEDGVYVK  99

Query  158  NLQRLFPVDTKMVVIIDDRGDVWRWSP-NLIKVSPYDFFVGIGDINSSFLPK  208
            +L  L   D   VVI+D+  D +   P N I + P+      GD + + L K
Sbjct  100  DLSLLGR-DLSRVVIVDNSPDSFLLQPDNGIPIPPF-----FGDPDDNELLK  145



Lambda      K        H        a         alpha
   0.311    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906995850


Query= TCONS_00027240

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease. Aspartyl...  281     9e-95
CDD:464203 pfam14543, TAXi_N, Xylanase inhibitor N-terminal. The ...  75.0    5e-17


>CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease.  Aspartyl (acid) 
proteases include pepsins, cathepsins, and renins. Two-domain 
structure, probably arising from ancestral duplication. 
This family does not include the retroviral nor retrotransposon 
proteases (pfam00077), which are much smaller and appear 
to be homologous to a single domain of the eukaryotic asp proteases.
Length=313

 Score = 281 bits (720),  Expect = 9e-95, Method: Composition-based stats.
 Identities = 106/222 (48%), Positives = 141/222 (64%), Gaps = 4/222 (2%)

Query  84   QYFSEISLGTPPQKFKVVLDTGSSNLWVPGSDCS-SIACFLHNKYDSSASSTYKANGTEF  142
            +YF  IS+GTPPQKF V+ DTGSS+LWVP S C+ S AC  H  +D S+SSTYK NGT F
Sbjct  1    EYFGTISIGTPPQKFTVIFDTGSSDLWVPSSYCTKSSACKSHGTFDPSSSSTYKLNGTTF  60

Query  143  AIKYGSGELSGFVSQDTLQIGDLKVVKQDFAEATNEPGLAFAFGRFDGILGLGYDTISVN  202
            +I YG G  SGF+ QDT+ +G L +  Q+F  AT EPG  F + +FDGILGLG+ +IS  
Sbjct  61   SISYGDGSASGFLGQDTVTVGGLTITNQEFGLATKEPGSFFEYAKFDGILGLGFPSISAV  120

Query  203  KIVPPFYNMLDQGLLDEPVFAFYLGDTNKEGDNSEASFGGVDKNHYTGELTKIPLRRKAY  262
               P F N+  QGL+D P F+ YL   +  G   E  FGGVD + YTG LT +P+  + Y
Sbjct  121  GATPVFDNLKSQGLIDSPAFSVYLNSPDAAG--GEIIFGGVDPSKYTGSLTYVPVTSQGY  178

Query  263  WEVDFDAIALGD-NVAELENTGIILDTGTSLIALPSTLADLL  303
            W++  D++ +G    A       ILDTGTSL+  P+++   +
Sbjct  179  WQITLDSVTVGGSTSACSSGCQAILDTGTSLLYGPTSIVSKI  220


>CDD:464203 pfam14543, TAXi_N, Xylanase inhibitor N-terminal.  The N- and 
C-termini of the members of this family are jointly necessary 
for creating the catalytic pocket necessary for cleaving 
xylanase. Phytopathogens produce xylanase that destroys plant 
cells, so its destruction through proteolysis is vital for 
plant-survival.
Length=172

 Score = 75.0 bits (185),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 42/151 (28%), Positives = 56/151 (37%), Gaps = 45/151 (30%)

Query  85   YFSEISLGTPPQKFKVVLDTGSSNLWVPGSDCSSIACFLHNK--YDSSASSTYKA-----  137
            Y   IS+GTPP  F +V+DTGS   WV    C    C+      +D   SSTYK      
Sbjct  1    YLVTISIGTPPVPFFLVVDTGSDLTWV---QCDPC-CYSQPDPLFDPYKSSTYKPVPCSS  56

Query  138  ----------------NGT-EFAIKYGSGELS-GFVSQDTLQIGDLKVVKQDFAEATNEP  179
                            N T ++ + YG G  + G ++ DTL +                P
Sbjct  57   PLCSLIALSSPGPCCSNNTCDYEVSYGDGSSTSGVLATDTLTLNSTGGSVSV-------P  109

Query  180  GLAFA---------FGRFDGILGLGYDTISV  201
               F              DGILGLG   +S+
Sbjct  110  NFVFGCGYNLLGGLPAGADGILGLGRGKLSL  140



Lambda      K        H        a         alpha
   0.316    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00022635

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease. Aspartyl...  281     9e-95
CDD:464203 pfam14543, TAXi_N, Xylanase inhibitor N-terminal. The ...  75.0    5e-17


>CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease.  Aspartyl (acid) 
proteases include pepsins, cathepsins, and renins. Two-domain 
structure, probably arising from ancestral duplication. 
This family does not include the retroviral nor retrotransposon 
proteases (pfam00077), which are much smaller and appear 
to be homologous to a single domain of the eukaryotic asp proteases.
Length=313

 Score = 281 bits (720),  Expect = 9e-95, Method: Composition-based stats.
 Identities = 106/222 (48%), Positives = 141/222 (64%), Gaps = 4/222 (2%)

Query  84   QYFSEISLGTPPQKFKVVLDTGSSNLWVPGSDCS-SIACFLHNKYDSSASSTYKANGTEF  142
            +YF  IS+GTPPQKF V+ DTGSS+LWVP S C+ S AC  H  +D S+SSTYK NGT F
Sbjct  1    EYFGTISIGTPPQKFTVIFDTGSSDLWVPSSYCTKSSACKSHGTFDPSSSSTYKLNGTTF  60

Query  143  AIKYGSGELSGFVSQDTLQIGDLKVVKQDFAEATNEPGLAFAFGRFDGILGLGYDTISVN  202
            +I YG G  SGF+ QDT+ +G L +  Q+F  AT EPG  F + +FDGILGLG+ +IS  
Sbjct  61   SISYGDGSASGFLGQDTVTVGGLTITNQEFGLATKEPGSFFEYAKFDGILGLGFPSISAV  120

Query  203  KIVPPFYNMLDQGLLDEPVFAFYLGDTNKEGDNSEASFGGVDKNHYTGELTKIPLRRKAY  262
               P F N+  QGL+D P F+ YL   +  G   E  FGGVD + YTG LT +P+  + Y
Sbjct  121  GATPVFDNLKSQGLIDSPAFSVYLNSPDAAG--GEIIFGGVDPSKYTGSLTYVPVTSQGY  178

Query  263  WEVDFDAIALGD-NVAELENTGIILDTGTSLIALPSTLADLL  303
            W++  D++ +G    A       ILDTGTSL+  P+++   +
Sbjct  179  WQITLDSVTVGGSTSACSSGCQAILDTGTSLLYGPTSIVSKI  220


>CDD:464203 pfam14543, TAXi_N, Xylanase inhibitor N-terminal.  The N- and 
C-termini of the members of this family are jointly necessary 
for creating the catalytic pocket necessary for cleaving 
xylanase. Phytopathogens produce xylanase that destroys plant 
cells, so its destruction through proteolysis is vital for 
plant-survival.
Length=172

 Score = 75.0 bits (185),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 42/151 (28%), Positives = 56/151 (37%), Gaps = 45/151 (30%)

Query  85   YFSEISLGTPPQKFKVVLDTGSSNLWVPGSDCSSIACFLHNK--YDSSASSTYKA-----  137
            Y   IS+GTPP  F +V+DTGS   WV    C    C+      +D   SSTYK      
Sbjct  1    YLVTISIGTPPVPFFLVVDTGSDLTWV---QCDPC-CYSQPDPLFDPYKSSTYKPVPCSS  56

Query  138  ----------------NGT-EFAIKYGSGELS-GFVSQDTLQIGDLKVVKQDFAEATNEP  179
                            N T ++ + YG G  + G ++ DTL +                P
Sbjct  57   PLCSLIALSSPGPCCSNNTCDYEVSYGDGSSTSGVLATDTLTLNSTGGSVSV-------P  109

Query  180  GLAFA---------FGRFDGILGLGYDTISV  201
               F              DGILGLG   +S+
Sbjct  110  NFVFGCGYNLLGGLPAGADGILGLGRGKLSL  140



Lambda      K        H        a         alpha
   0.316    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00022637

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460754 pfam02934, GatB_N, GatB/GatE catalytic domain. This do...  196     2e-61
CDD:396969 pfam02637, GatB_Yqey, GatB domain. This domain is foun...  96.1    1e-24


>CDD:460754 pfam02934, GatB_N, GatB/GatE catalytic domain.  This domain is 
found in the GatB and GatE proteins.
Length=284

 Score = 196 bits (501),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 64/141 (45%), Positives = 83/141 (59%), Gaps = 10/141 (7%)

Query  2    PQIHNPATAAACVRKIQAVLQSCSAVTTGMELGGLRADVNVSIRRRDEAPGTHQYGGIGG  61
            P I +P  A A ++K++++L+        ME G LR DVNVS+R +              
Sbjct  153  PDIRSPEEARAYLKKLRSILRYLGVSDGNMEEGSLRCDVNVSVRPKGSEE----------  202

Query  62   LGQRTEIKNLSSFKAVEDAVIAEKNRQIAVLESGGVIEGETRGWTIGSTETRKLRGKEGE  121
            LG R EIKNL+SF+ VE A+  E  RQI +LESGG I  ETRGW     ETR +R KE  
Sbjct  203  LGTRVEIKNLNSFRFVEKAIEYEIERQIELLESGGKIRQETRGWDEDKGETRSMRSKEEA  262

Query  122  VDYRYMPDPDLPPLIIGHDLI  142
             DYRY P+PDLPP++I  + I
Sbjct  263  HDYRYFPEPDLPPIVISEEWI  283


>CDD:396969 pfam02637, GatB_Yqey, GatB domain.  This domain is found in GatB. 
It is about 140 amino acid residues long. This domain is 
found at the C-terminus of GatB, which transamidates Glu-tRNA 
to Gln-tRNA.
Length=148

 Score = 96.1 bits (240),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 6/144 (4%)

Query  207  GGLARMAGNWVLHELGGLCTKADLAWDAQRVPAETLAQIIDQLQRKRITGATAKQVLAMV  266
            G   ++A NW+L EL G   K  L  D   +  E LA++I  +    I+G  AK+VL  +
Sbjct  10   GADPKLAANWLLGELLGYLNKEGLDIDESPLTPEHLAELIKLIDEGTISGKIAKEVLEEL  69

Query  267  FDGDRRPVPQLLEEENLLLRPLSRDEYL-ALAEAAIGQNPQMVEQIRAKNQLGKLGWFVG  325
             +  + P       E   L+ +S +E L  + +  I +NP+ VE  ++  +   LG+ VG
Sbjct  70   LENGKSP---EEIVEEKGLKQISDEEELEKIVDEVIAENPKAVEDYKSGKE-KALGFLVG  125

Query  326  QMMRMGEKGRVEAQKADEILRELI  349
            Q+M+   +G+ + +  +E+L+E +
Sbjct  126  QVMKK-TRGKADPKLVNELLKEKL  148



Lambda      K        H        a         alpha
   0.316    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00022638

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00022639

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00022640

Length=1120


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1428351474


Query= TCONS_00022641

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466388 pfam20237, DUF6594, Family of unknown function (DUF659...  108     3e-27


>CDD:466388 pfam20237, DUF6594, Family of unknown function (DUF6594).  This 
entry represents a group of uncharacterized proteins that 
contain a set of C-terminal transmembrane helices. The family 
may be related to pfam10267.
Length=233

 Score = 108 bits (271),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 70/147 (48%), Gaps = 26/147 (18%)

Query  288  PLPPLYRRFEDLNHRVLLYLQDEIAQMEEDLRVLDEYEEMHRVATAEREGTKKL-PASRR  346
            P  P++RRF  LN R LL+LQDE+A++EE+L  LD+ E        +          S R
Sbjct  12   PDFPIFRRFGTLNARNLLHLQDELAELEEELDELDDEESRDLSLGDDPRSRNSWDELSER  71

Query  347  MDAQAQVYSSLHYRRVEVMGALIHKTEQY----TYSRVLQTIPSASDKDIETYRTWMKDH  402
             +                +  +  K ++Y    +YS+ L  +P  S +DI++ R W+   
Sbjct  72   RE----------------LLEIRKKLKEYDALLSYSK-LNKLPPPSKRDIDSLRNWLG--  112

Query  403  SPIITAESRFLDHGKDLISLSPRRASP  429
             P+   E+RFL    DL+SL P R  P
Sbjct  113  -PLDGGETRFLYE-DDLVSLRPDREDP  137



Lambda      K        H        a         alpha
   0.311    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 661646842


Query= TCONS_00022643

Length=1120


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1428351474


Query= TCONS_00022642

Length=1120


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1428351474


Query= TCONS_00027245

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00022644

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00022645

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00022646

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459831 pfam00498, FHA, FHA domain. The FHA (Forkhead-associat...  60.3    1e-12


>CDD:459831 pfam00498, FHA, FHA domain.  The FHA (Forkhead-associated) domain 
is a phosphopeptide binding motif.
Length=66

 Score = 60.3 bits (147),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 27/80 (34%), Positives = 38/80 (48%), Gaps = 14/80 (18%)

Query  234  WLIGRERLVADFPLDHPSCSKQHAAIQFRYVEKRNEFGDRIGKVKPYIIDLESANGSNVN  293
              IGR     D  LD PS S++HA I++             G  + Y+ DL S NG+ VN
Sbjct  1    VTIGRSP-DCDIVLDDPSVSRRHAEIRYD------------GGGRFYLEDLGSTNGTFVN  47

Query  294  GDTIPAGRYVELRDKDVLKF  313
            G  +     V L+D DV++ 
Sbjct  48   GQRLG-PEPVRLKDGDVIRL  66



Lambda      K        H        a         alpha
   0.314    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00027246

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.138    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00027247

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459831 pfam00498, FHA, FHA domain. The FHA (Forkhead-associat...  60.3    1e-12


>CDD:459831 pfam00498, FHA, FHA domain.  The FHA (Forkhead-associated) domain 
is a phosphopeptide binding motif.
Length=66

 Score = 60.3 bits (147),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 27/80 (34%), Positives = 38/80 (48%), Gaps = 14/80 (18%)

Query  234  WLIGRERLVADFPLDHPSCSKQHAAIQFRYVEKRNEFGDRIGKVKPYIIDLESANGSNVN  293
              IGR     D  LD PS S++HA I++             G  + Y+ DL S NG+ VN
Sbjct  1    VTIGRSP-DCDIVLDDPSVSRRHAEIRYD------------GGGRFYLEDLGSTNGTFVN  47

Query  294  GDTIPAGRYVELRDKDVLKF  313
            G  +     V L+D DV++ 
Sbjct  48   GQRLG-PEPVRLKDGDVIRL  66



Lambda      K        H        a         alpha
   0.314    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00022648

Length=855


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1090990640


Query= TCONS_00027248

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463063 pfam10377, ATG11, Autophagy-related protein 11. The fu...  162     5e-52


>CDD:463063 pfam10377, ATG11, Autophagy-related protein 11.  The function 
of this family is conflicting. In the fission yeast, Schizosaccharomyces 
pombe, this protein has been shown to interact 
with the telomere cap complex. However, in budding yeast, Saccharomyces 
cerevisiae, this protein is called ATG11 and is 
shown to be involved in autophagy.
Length=130

 Score = 162 bits (413),  Expect = 5e-52, Method: Composition-based stats.
 Identities = 59/119 (50%), Positives = 71/119 (60%), Gaps = 24/119 (20%)

Query  2    QSEAHDKIAYRSFKEGDLALFLPTR---NQAIRSWAAFNVGAPHYFLREQDAHKLQTRDW  58
            QSEAH+KI  ++FK GDLALFLPTR   + +   WAAFNVGAPHYFL+      L++R+W
Sbjct  33   QSEAHEKITLKNFKVGDLALFLPTRRHNDLSTPPWAAFNVGAPHYFLKADSLLALKSREW  92

Query  59   LLARITKIEERVVDLSKSMNGAHPDRRSIGGTSDAASIDDENPFELSDGLRWYLLDANE  117
             + RIT IEERVVDL                     S  D NPF+LS G  WYL+ A E
Sbjct  93   FVGRITSIEERVVDL---------------------SDKDSNPFKLSKGTVWYLVTAEE  130



Lambda      K        H        a         alpha
   0.311    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00022649

Length=1198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463063 pfam10377, ATG11, Autophagy-related protein 11. The fu...  206     2e-62
CDD:427715 pfam04108, APG17, Autophagy protein Apg17. Apg17 is re...  151     2e-40


>CDD:463063 pfam10377, ATG11, Autophagy-related protein 11.  The function 
of this family is conflicting. In the fission yeast, Schizosaccharomyces 
pombe, this protein has been shown to interact 
with the telomere cap complex. However, in budding yeast, Saccharomyces 
cerevisiae, this protein is called ATG11 and is 
shown to be involved in autophagy.
Length=130

 Score = 206 bits (527),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 73/150 (49%), Positives = 92/150 (61%), Gaps = 24/150 (16%)

Query  946   DAVVKRVKDIELLARKWQKEARGYRDKYHRMQSEAHDKIAYRSFKEGDLALFLPTR---N  1002
              AV+KR KD+E LA+K  KE +  R+K  ++QSEAH+KI  ++FK GDLALFLPTR   +
Sbjct  2     SAVIKRFKDVETLAKKLTKENKSKREKLEKLQSEAHEKITLKNFKVGDLALFLPTRRHND  61

Query  1003  QAIRSWAAFNVGAPHYFLREQDAHKLQTRDWLLARITKIEERVVDLSKSMNGAHPDRRSI  1062
              +   WAAFNVGAPHYFL+      L++R+W + RIT IEERVVDL              
Sbjct  62    LSTPPWAAFNVGAPHYFLKADSLLALKSREWFVGRITSIEERVVDL--------------  107

Query  1063  GGTSDAASIDDENPFELSDGLRWYLLDANE  1092
                    S  D NPF+LS G  WYL+ A E
Sbjct  108   -------SDKDSNPFKLSKGTVWYLVTAEE  130


>CDD:427715 pfam04108, APG17, Autophagy protein Apg17.  Apg17 is required 
for activating Apg1 protein kinases.
Length=360

 Score = 151 bits (384),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 78/362 (22%), Positives = 151/362 (42%), Gaps = 42/362 (12%)

Query  4    RSWALGLVERCGAMDKSIHEHNERTDIIHRAAGVALENLKTHVGNLENRFQEAQTWANDL  63
              WA  L+    ++ + +     +   + R   V L NL+     LE    E +     L
Sbjct  9    CRWANELLTDARSLLEELVVLLAKIAFLRRGLSVQLANLEKVREGLEKVLNELKKDFKQL  68

Query  64   LKEQRAALDGWQRALTTLESIPAPKVFPFLGRPSTPKEHRDRPTGTLRDFVDANEVQKAG  123
            LK+  AAL+  +  L  L + P     P        ++ +     TL DF+D + V+   
Sbjct  69   LKDLDAALERLEETLDKLRNTPVEPALP-----PGEEKQK-----TLLDFIDEDSVEILR  118

Query  124  AEAAAESSRFARQIDDVAEAVRGITADTQRLID--DQLPSGADAADG-----------LQ  170
                          + +   ++    D + L    + L S +++               +
Sbjct  119  DALKELIDELQAAQESLDSDLKRFDDDLRDLQKELESLSSPSESISLIPTLLKELESLEE  178

Query  171  EMITFAKKISSDYEH-VIALPNNQKTLANISRLALTHTQDL---LPSMLDISAEI---HA  223
            EM +  + +++ Y+  V A+   +   A +  +     ++L   +P + D   E+   + 
Sbjct  179  EMASLLESLTNHYDQCVTAVKLTEGGRAEMLEVLENDARELDDVVPELQDRLDEMENNYE  238

Query  224  GLEEAVRRHNTAMKVALDHMRTISAIELRLADVQSQIINLNVQ------------SDAFD  271
             L++ + + N+ +   L  ++ I+ I+ RL +  + +     +            S+  D
Sbjct  239  RLQKLLEQKNSLIDELLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETIEDYLSELED  298

Query  272  VVFSVYHMPMVYGSILVESVRRREFNEKMKADSLTLAEEMAVFRDEEQRRRKKWLKSMGD  331
            +       P  YGS+L+E  RRRE+ EKMK     LAEE+   ++EE++RR+K+LK +GD
Sbjct  299  LREFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRREKFLKEVGD  358

Query  332  FI  333
            F+
Sbjct  359  FL  360



Lambda      K        H        a         alpha
   0.312    0.127    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1537258038


Query= TCONS_00022650

Length=985
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463063 pfam10377, ATG11, Autophagy-related protein 11. The fu...  205     2e-62
CDD:427715 pfam04108, APG17, Autophagy protein Apg17. Apg17 is re...  82.1    5e-17


>CDD:463063 pfam10377, ATG11, Autophagy-related protein 11.  The function 
of this family is conflicting. In the fission yeast, Schizosaccharomyces 
pombe, this protein has been shown to interact 
with the telomere cap complex. However, in budding yeast, Saccharomyces 
cerevisiae, this protein is called ATG11 and is 
shown to be involved in autophagy.
Length=130

 Score = 205 bits (525),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 73/150 (49%), Positives = 92/150 (61%), Gaps = 24/150 (16%)

Query  733  DAVVKRVKDIELLARKWQKEARGYRDKYHRMQSEAHDKIAYRSFKEGDLALFLPTR---N  789
             AV+KR KD+E LA+K  KE +  R+K  ++QSEAH+KI  ++FK GDLALFLPTR   +
Sbjct  2    SAVIKRFKDVETLAKKLTKENKSKREKLEKLQSEAHEKITLKNFKVGDLALFLPTRRHND  61

Query  790  QAIRSWAAFNVGAPHYFLREQDAHKLQTRDWLLARITKIEERVVDLSKSMNGAHPDRRSI  849
             +   WAAFNVGAPHYFL+      L++R+W + RIT IEERVVDL              
Sbjct  62   LSTPPWAAFNVGAPHYFLKADSLLALKSREWFVGRITSIEERVVDL--------------  107

Query  850  GGTSDAASIDDENPFELSDGLRWYLLDANE  879
                   S  D NPF+LS G  WYL+ A E
Sbjct  108  -------SDKDSNPFKLSKGTVWYLVTAEE  130


>CDD:427715 pfam04108, APG17, Autophagy protein Apg17.  Apg17 is required 
for activating Apg1 protein kinases.
Length=360

 Score = 82.1 bits (203),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 39/131 (30%), Positives = 68/131 (52%), Gaps = 12/131 (9%)

Query  2    LDISAEIHAGLEEAVRRHNTAMKVALDHMRTISAIELRLADVQSQIINLNVQ--------  53
            LD     +  L++ + + N+ +   L  ++ I+ I+ RL +  + +     +        
Sbjct  230  LDEMENNYERLQKLLEQKNSLIDELLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETI  289

Query  54   ----SDAFDVVFSVYHMPMVYGSILVESVRRREFNEKMKADSLTLAEEMAVFRDEEQRRR  109
                S+  D+       P  YGS+L+E  RRRE+ EKMK     LAEE+   ++EE++RR
Sbjct  290  EDYLSELEDLREFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRR  349

Query  110  KKWLKSMGDFI  120
            +K+LK +GDF+
Sbjct  350  EKFLKEVGDFL  360



Lambda      K        H        a         alpha
   0.311    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1258713764


Query= TCONS_00027249

Length=985
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463063 pfam10377, ATG11, Autophagy-related protein 11. The fu...  205     2e-62
CDD:427715 pfam04108, APG17, Autophagy protein Apg17. Apg17 is re...  82.1    5e-17


>CDD:463063 pfam10377, ATG11, Autophagy-related protein 11.  The function 
of this family is conflicting. In the fission yeast, Schizosaccharomyces 
pombe, this protein has been shown to interact 
with the telomere cap complex. However, in budding yeast, Saccharomyces 
cerevisiae, this protein is called ATG11 and is 
shown to be involved in autophagy.
Length=130

 Score = 205 bits (525),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 73/150 (49%), Positives = 92/150 (61%), Gaps = 24/150 (16%)

Query  733  DAVVKRVKDIELLARKWQKEARGYRDKYHRMQSEAHDKIAYRSFKEGDLALFLPTR---N  789
             AV+KR KD+E LA+K  KE +  R+K  ++QSEAH+KI  ++FK GDLALFLPTR   +
Sbjct  2    SAVIKRFKDVETLAKKLTKENKSKREKLEKLQSEAHEKITLKNFKVGDLALFLPTRRHND  61

Query  790  QAIRSWAAFNVGAPHYFLREQDAHKLQTRDWLLARITKIEERVVDLSKSMNGAHPDRRSI  849
             +   WAAFNVGAPHYFL+      L++R+W + RIT IEERVVDL              
Sbjct  62   LSTPPWAAFNVGAPHYFLKADSLLALKSREWFVGRITSIEERVVDL--------------  107

Query  850  GGTSDAASIDDENPFELSDGLRWYLLDANE  879
                   S  D NPF+LS G  WYL+ A E
Sbjct  108  -------SDKDSNPFKLSKGTVWYLVTAEE  130


>CDD:427715 pfam04108, APG17, Autophagy protein Apg17.  Apg17 is required 
for activating Apg1 protein kinases.
Length=360

 Score = 82.1 bits (203),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 39/131 (30%), Positives = 68/131 (52%), Gaps = 12/131 (9%)

Query  2    LDISAEIHAGLEEAVRRHNTAMKVALDHMRTISAIELRLADVQSQIINLNVQ--------  53
            LD     +  L++ + + N+ +   L  ++ I+ I+ RL +  + +     +        
Sbjct  230  LDEMENNYERLQKLLEQKNSLIDELLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETI  289

Query  54   ----SDAFDVVFSVYHMPMVYGSILVESVRRREFNEKMKADSLTLAEEMAVFRDEEQRRR  109
                S+  D+       P  YGS+L+E  RRRE+ EKMK     LAEE+   ++EE++RR
Sbjct  290  EDYLSELEDLREFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRR  349

Query  110  KKWLKSMGDFI  120
            +K+LK +GDF+
Sbjct  350  EKFLKEVGDFL  360



Lambda      K        H        a         alpha
   0.311    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0716    0.140     1.90     42.6     43.6 

Effective search space used: 1258713764


Query= TCONS_00022652

Length=1198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463063 pfam10377, ATG11, Autophagy-related protein 11. The fu...  206     2e-62
CDD:427715 pfam04108, APG17, Autophagy protein Apg17. Apg17 is re...  151     2e-40


>CDD:463063 pfam10377, ATG11, Autophagy-related protein 11.  The function 
of this family is conflicting. In the fission yeast, Schizosaccharomyces 
pombe, this protein has been shown to interact 
with the telomere cap complex. However, in budding yeast, Saccharomyces 
cerevisiae, this protein is called ATG11 and is 
shown to be involved in autophagy.
Length=130

 Score = 206 bits (527),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 73/150 (49%), Positives = 92/150 (61%), Gaps = 24/150 (16%)

Query  946   DAVVKRVKDIELLARKWQKEARGYRDKYHRMQSEAHDKIAYRSFKEGDLALFLPTR---N  1002
              AV+KR KD+E LA+K  KE +  R+K  ++QSEAH+KI  ++FK GDLALFLPTR   +
Sbjct  2     SAVIKRFKDVETLAKKLTKENKSKREKLEKLQSEAHEKITLKNFKVGDLALFLPTRRHND  61

Query  1003  QAIRSWAAFNVGAPHYFLREQDAHKLQTRDWLLARITKIEERVVDLSKSMNGAHPDRRSI  1062
              +   WAAFNVGAPHYFL+      L++R+W + RIT IEERVVDL              
Sbjct  62    LSTPPWAAFNVGAPHYFLKADSLLALKSREWFVGRITSIEERVVDL--------------  107

Query  1063  GGTSDAASIDDENPFELSDGLRWYLLDANE  1092
                    S  D NPF+LS G  WYL+ A E
Sbjct  108   -------SDKDSNPFKLSKGTVWYLVTAEE  130


>CDD:427715 pfam04108, APG17, Autophagy protein Apg17.  Apg17 is required 
for activating Apg1 protein kinases.
Length=360

 Score = 151 bits (384),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 78/362 (22%), Positives = 151/362 (42%), Gaps = 42/362 (12%)

Query  4    RSWALGLVERCGAMDKSIHEHNERTDIIHRAAGVALENLKTHVGNLENRFQEAQTWANDL  63
              WA  L+    ++ + +     +   + R   V L NL+     LE    E +     L
Sbjct  9    CRWANELLTDARSLLEELVVLLAKIAFLRRGLSVQLANLEKVREGLEKVLNELKKDFKQL  68

Query  64   LKEQRAALDGWQRALTTLESIPAPKVFPFLGRPSTPKEHRDRPTGTLRDFVDANEVQKAG  123
            LK+  AAL+  +  L  L + P     P        ++ +     TL DF+D + V+   
Sbjct  69   LKDLDAALERLEETLDKLRNTPVEPALP-----PGEEKQK-----TLLDFIDEDSVEILR  118

Query  124  AEAAAESSRFARQIDDVAEAVRGITADTQRLID--DQLPSGADAADG-----------LQ  170
                          + +   ++    D + L    + L S +++               +
Sbjct  119  DALKELIDELQAAQESLDSDLKRFDDDLRDLQKELESLSSPSESISLIPTLLKELESLEE  178

Query  171  EMITFAKKISSDYEH-VIALPNNQKTLANISRLALTHTQDL---LPSMLDISAEI---HA  223
            EM +  + +++ Y+  V A+   +   A +  +     ++L   +P + D   E+   + 
Sbjct  179  EMASLLESLTNHYDQCVTAVKLTEGGRAEMLEVLENDARELDDVVPELQDRLDEMENNYE  238

Query  224  GLEEAVRRHNTAMKVALDHMRTISAIELRLADVQSQIINLNVQ------------SDAFD  271
             L++ + + N+ +   L  ++ I+ I+ RL +  + +     +            S+  D
Sbjct  239  RLQKLLEQKNSLIDELLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETIEDYLSELED  298

Query  272  VVFSVYHMPMVYGSILVESVRRREFNEKMKADSLTLAEEMAVFRDEEQRRRKKWLKSMGD  331
            +       P  YGS+L+E  RRRE+ EKMK     LAEE+   ++EE++RR+K+LK +GD
Sbjct  299  LREFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRREKFLKEVGD  358

Query  332  FI  333
            F+
Sbjct  359  FL  360



Lambda      K        H        a         alpha
   0.312    0.127    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1537258038


Query= TCONS_00022651

Length=1198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463063 pfam10377, ATG11, Autophagy-related protein 11. The fu...  206     2e-62
CDD:427715 pfam04108, APG17, Autophagy protein Apg17. Apg17 is re...  151     2e-40


>CDD:463063 pfam10377, ATG11, Autophagy-related protein 11.  The function 
of this family is conflicting. In the fission yeast, Schizosaccharomyces 
pombe, this protein has been shown to interact 
with the telomere cap complex. However, in budding yeast, Saccharomyces 
cerevisiae, this protein is called ATG11 and is 
shown to be involved in autophagy.
Length=130

 Score = 206 bits (527),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 73/150 (49%), Positives = 92/150 (61%), Gaps = 24/150 (16%)

Query  946   DAVVKRVKDIELLARKWQKEARGYRDKYHRMQSEAHDKIAYRSFKEGDLALFLPTR---N  1002
              AV+KR KD+E LA+K  KE +  R+K  ++QSEAH+KI  ++FK GDLALFLPTR   +
Sbjct  2     SAVIKRFKDVETLAKKLTKENKSKREKLEKLQSEAHEKITLKNFKVGDLALFLPTRRHND  61

Query  1003  QAIRSWAAFNVGAPHYFLREQDAHKLQTRDWLLARITKIEERVVDLSKSMNGAHPDRRSI  1062
              +   WAAFNVGAPHYFL+      L++R+W + RIT IEERVVDL              
Sbjct  62    LSTPPWAAFNVGAPHYFLKADSLLALKSREWFVGRITSIEERVVDL--------------  107

Query  1063  GGTSDAASIDDENPFELSDGLRWYLLDANE  1092
                    S  D NPF+LS G  WYL+ A E
Sbjct  108   -------SDKDSNPFKLSKGTVWYLVTAEE  130


>CDD:427715 pfam04108, APG17, Autophagy protein Apg17.  Apg17 is required 
for activating Apg1 protein kinases.
Length=360

 Score = 151 bits (384),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 78/362 (22%), Positives = 151/362 (42%), Gaps = 42/362 (12%)

Query  4    RSWALGLVERCGAMDKSIHEHNERTDIIHRAAGVALENLKTHVGNLENRFQEAQTWANDL  63
              WA  L+    ++ + +     +   + R   V L NL+     LE    E +     L
Sbjct  9    CRWANELLTDARSLLEELVVLLAKIAFLRRGLSVQLANLEKVREGLEKVLNELKKDFKQL  68

Query  64   LKEQRAALDGWQRALTTLESIPAPKVFPFLGRPSTPKEHRDRPTGTLRDFVDANEVQKAG  123
            LK+  AAL+  +  L  L + P     P        ++ +     TL DF+D + V+   
Sbjct  69   LKDLDAALERLEETLDKLRNTPVEPALP-----PGEEKQK-----TLLDFIDEDSVEILR  118

Query  124  AEAAAESSRFARQIDDVAEAVRGITADTQRLID--DQLPSGADAADG-----------LQ  170
                          + +   ++    D + L    + L S +++               +
Sbjct  119  DALKELIDELQAAQESLDSDLKRFDDDLRDLQKELESLSSPSESISLIPTLLKELESLEE  178

Query  171  EMITFAKKISSDYEH-VIALPNNQKTLANISRLALTHTQDL---LPSMLDISAEI---HA  223
            EM +  + +++ Y+  V A+   +   A +  +     ++L   +P + D   E+   + 
Sbjct  179  EMASLLESLTNHYDQCVTAVKLTEGGRAEMLEVLENDARELDDVVPELQDRLDEMENNYE  238

Query  224  GLEEAVRRHNTAMKVALDHMRTISAIELRLADVQSQIINLNVQ------------SDAFD  271
             L++ + + N+ +   L  ++ I+ I+ RL +  + +     +            S+  D
Sbjct  239  RLQKLLEQKNSLIDELLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETIEDYLSELED  298

Query  272  VVFSVYHMPMVYGSILVESVRRREFNEKMKADSLTLAEEMAVFRDEEQRRRKKWLKSMGD  331
            +       P  YGS+L+E  RRRE+ EKMK     LAEE+   ++EE++RR+K+LK +GD
Sbjct  299  LREFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRREKFLKEVGD  358

Query  332  FI  333
            F+
Sbjct  359  FL  360



Lambda      K        H        a         alpha
   0.312    0.127    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1537258038


Query= TCONS_00022653

Length=1198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463063 pfam10377, ATG11, Autophagy-related protein 11. The fu...  206     2e-62
CDD:427715 pfam04108, APG17, Autophagy protein Apg17. Apg17 is re...  151     2e-40


>CDD:463063 pfam10377, ATG11, Autophagy-related protein 11.  The function 
of this family is conflicting. In the fission yeast, Schizosaccharomyces 
pombe, this protein has been shown to interact 
with the telomere cap complex. However, in budding yeast, Saccharomyces 
cerevisiae, this protein is called ATG11 and is 
shown to be involved in autophagy.
Length=130

 Score = 206 bits (527),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 73/150 (49%), Positives = 92/150 (61%), Gaps = 24/150 (16%)

Query  946   DAVVKRVKDIELLARKWQKEARGYRDKYHRMQSEAHDKIAYRSFKEGDLALFLPTR---N  1002
              AV+KR KD+E LA+K  KE +  R+K  ++QSEAH+KI  ++FK GDLALFLPTR   +
Sbjct  2     SAVIKRFKDVETLAKKLTKENKSKREKLEKLQSEAHEKITLKNFKVGDLALFLPTRRHND  61

Query  1003  QAIRSWAAFNVGAPHYFLREQDAHKLQTRDWLLARITKIEERVVDLSKSMNGAHPDRRSI  1062
              +   WAAFNVGAPHYFL+      L++R+W + RIT IEERVVDL              
Sbjct  62    LSTPPWAAFNVGAPHYFLKADSLLALKSREWFVGRITSIEERVVDL--------------  107

Query  1063  GGTSDAASIDDENPFELSDGLRWYLLDANE  1092
                    S  D NPF+LS G  WYL+ A E
Sbjct  108   -------SDKDSNPFKLSKGTVWYLVTAEE  130


>CDD:427715 pfam04108, APG17, Autophagy protein Apg17.  Apg17 is required 
for activating Apg1 protein kinases.
Length=360

 Score = 151 bits (384),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 78/362 (22%), Positives = 151/362 (42%), Gaps = 42/362 (12%)

Query  4    RSWALGLVERCGAMDKSIHEHNERTDIIHRAAGVALENLKTHVGNLENRFQEAQTWANDL  63
              WA  L+    ++ + +     +   + R   V L NL+     LE    E +     L
Sbjct  9    CRWANELLTDARSLLEELVVLLAKIAFLRRGLSVQLANLEKVREGLEKVLNELKKDFKQL  68

Query  64   LKEQRAALDGWQRALTTLESIPAPKVFPFLGRPSTPKEHRDRPTGTLRDFVDANEVQKAG  123
            LK+  AAL+  +  L  L + P     P        ++ +     TL DF+D + V+   
Sbjct  69   LKDLDAALERLEETLDKLRNTPVEPALP-----PGEEKQK-----TLLDFIDEDSVEILR  118

Query  124  AEAAAESSRFARQIDDVAEAVRGITADTQRLID--DQLPSGADAADG-----------LQ  170
                          + +   ++    D + L    + L S +++               +
Sbjct  119  DALKELIDELQAAQESLDSDLKRFDDDLRDLQKELESLSSPSESISLIPTLLKELESLEE  178

Query  171  EMITFAKKISSDYEH-VIALPNNQKTLANISRLALTHTQDL---LPSMLDISAEI---HA  223
            EM +  + +++ Y+  V A+   +   A +  +     ++L   +P + D   E+   + 
Sbjct  179  EMASLLESLTNHYDQCVTAVKLTEGGRAEMLEVLENDARELDDVVPELQDRLDEMENNYE  238

Query  224  GLEEAVRRHNTAMKVALDHMRTISAIELRLADVQSQIINLNVQ------------SDAFD  271
             L++ + + N+ +   L  ++ I+ I+ RL +  + +     +            S+  D
Sbjct  239  RLQKLLEQKNSLIDELLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETIEDYLSELED  298

Query  272  VVFSVYHMPMVYGSILVESVRRREFNEKMKADSLTLAEEMAVFRDEEQRRRKKWLKSMGD  331
            +       P  YGS+L+E  RRRE+ EKMK     LAEE+   ++EE++RR+K+LK +GD
Sbjct  299  LREFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRREKFLKEVGD  358

Query  332  FI  333
            F+
Sbjct  359  FL  360



Lambda      K        H        a         alpha
   0.312    0.127    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1537258038


Query= TCONS_00027250

Length=1198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463063 pfam10377, ATG11, Autophagy-related protein 11. The fu...  206     2e-62
CDD:427715 pfam04108, APG17, Autophagy protein Apg17. Apg17 is re...  151     2e-40


>CDD:463063 pfam10377, ATG11, Autophagy-related protein 11.  The function 
of this family is conflicting. In the fission yeast, Schizosaccharomyces 
pombe, this protein has been shown to interact 
with the telomere cap complex. However, in budding yeast, Saccharomyces 
cerevisiae, this protein is called ATG11 and is 
shown to be involved in autophagy.
Length=130

 Score = 206 bits (527),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 73/150 (49%), Positives = 92/150 (61%), Gaps = 24/150 (16%)

Query  946   DAVVKRVKDIELLARKWQKEARGYRDKYHRMQSEAHDKIAYRSFKEGDLALFLPTR---N  1002
              AV+KR KD+E LA+K  KE +  R+K  ++QSEAH+KI  ++FK GDLALFLPTR   +
Sbjct  2     SAVIKRFKDVETLAKKLTKENKSKREKLEKLQSEAHEKITLKNFKVGDLALFLPTRRHND  61

Query  1003  QAIRSWAAFNVGAPHYFLREQDAHKLQTRDWLLARITKIEERVVDLSKSMNGAHPDRRSI  1062
              +   WAAFNVGAPHYFL+      L++R+W + RIT IEERVVDL              
Sbjct  62    LSTPPWAAFNVGAPHYFLKADSLLALKSREWFVGRITSIEERVVDL--------------  107

Query  1063  GGTSDAASIDDENPFELSDGLRWYLLDANE  1092
                    S  D NPF+LS G  WYL+ A E
Sbjct  108   -------SDKDSNPFKLSKGTVWYLVTAEE  130


>CDD:427715 pfam04108, APG17, Autophagy protein Apg17.  Apg17 is required 
for activating Apg1 protein kinases.
Length=360

 Score = 151 bits (384),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 78/362 (22%), Positives = 151/362 (42%), Gaps = 42/362 (12%)

Query  4    RSWALGLVERCGAMDKSIHEHNERTDIIHRAAGVALENLKTHVGNLENRFQEAQTWANDL  63
              WA  L+    ++ + +     +   + R   V L NL+     LE    E +     L
Sbjct  9    CRWANELLTDARSLLEELVVLLAKIAFLRRGLSVQLANLEKVREGLEKVLNELKKDFKQL  68

Query  64   LKEQRAALDGWQRALTTLESIPAPKVFPFLGRPSTPKEHRDRPTGTLRDFVDANEVQKAG  123
            LK+  AAL+  +  L  L + P     P        ++ +     TL DF+D + V+   
Sbjct  69   LKDLDAALERLEETLDKLRNTPVEPALP-----PGEEKQK-----TLLDFIDEDSVEILR  118

Query  124  AEAAAESSRFARQIDDVAEAVRGITADTQRLID--DQLPSGADAADG-----------LQ  170
                          + +   ++    D + L    + L S +++               +
Sbjct  119  DALKELIDELQAAQESLDSDLKRFDDDLRDLQKELESLSSPSESISLIPTLLKELESLEE  178

Query  171  EMITFAKKISSDYEH-VIALPNNQKTLANISRLALTHTQDL---LPSMLDISAEI---HA  223
            EM +  + +++ Y+  V A+   +   A +  +     ++L   +P + D   E+   + 
Sbjct  179  EMASLLESLTNHYDQCVTAVKLTEGGRAEMLEVLENDARELDDVVPELQDRLDEMENNYE  238

Query  224  GLEEAVRRHNTAMKVALDHMRTISAIELRLADVQSQIINLNVQ------------SDAFD  271
             L++ + + N+ +   L  ++ I+ I+ RL +  + +     +            S+  D
Sbjct  239  RLQKLLEQKNSLIDELLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETIEDYLSELED  298

Query  272  VVFSVYHMPMVYGSILVESVRRREFNEKMKADSLTLAEEMAVFRDEEQRRRKKWLKSMGD  331
            +       P  YGS+L+E  RRRE+ EKMK     LAEE+   ++EE++RR+K+LK +GD
Sbjct  299  LREFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRREKFLKEVGD  358

Query  332  FI  333
            F+
Sbjct  359  FL  360



Lambda      K        H        a         alpha
   0.312    0.127    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1537258038


Query= TCONS_00027251

Length=1156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463063 pfam10377, ATG11, Autophagy-related protein 11. The fu...  206     2e-62
CDD:427715 pfam04108, APG17, Autophagy protein Apg17. Apg17 is re...  151     2e-40


>CDD:463063 pfam10377, ATG11, Autophagy-related protein 11.  The function 
of this family is conflicting. In the fission yeast, Schizosaccharomyces 
pombe, this protein has been shown to interact 
with the telomere cap complex. However, in budding yeast, Saccharomyces 
cerevisiae, this protein is called ATG11 and is 
shown to be involved in autophagy.
Length=130

 Score = 206 bits (526),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 73/150 (49%), Positives = 92/150 (61%), Gaps = 24/150 (16%)

Query  904   DAVVKRVKDIELLARKWQKEARGYRDKYHRMQSEAHDKIAYRSFKEGDLALFLPTR---N  960
              AV+KR KD+E LA+K  KE +  R+K  ++QSEAH+KI  ++FK GDLALFLPTR   +
Sbjct  2     SAVIKRFKDVETLAKKLTKENKSKREKLEKLQSEAHEKITLKNFKVGDLALFLPTRRHND  61

Query  961   QAIRSWAAFNVGAPHYFLREQDAHKLQTRDWLLARITKIEERVVDLSKSMNGAHPDRRSI  1020
              +   WAAFNVGAPHYFL+      L++R+W + RIT IEERVVDL              
Sbjct  62    LSTPPWAAFNVGAPHYFLKADSLLALKSREWFVGRITSIEERVVDL--------------  107

Query  1021  GGTSDAASIDDENPFELSDGLRWYLLDANE  1050
                    S  D NPF+LS G  WYL+ A E
Sbjct  108   -------SDKDSNPFKLSKGTVWYLVTAEE  130


>CDD:427715 pfam04108, APG17, Autophagy protein Apg17.  Apg17 is required 
for activating Apg1 protein kinases.
Length=360

 Score = 151 bits (383),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 78/362 (22%), Positives = 151/362 (42%), Gaps = 42/362 (12%)

Query  4    RSWALGLVERCGAMDKSIHEHNERTDIIHRAAGVALENLKTHVGNLENRFQEAQTWANDL  63
              WA  L+    ++ + +     +   + R   V L NL+     LE    E +     L
Sbjct  9    CRWANELLTDARSLLEELVVLLAKIAFLRRGLSVQLANLEKVREGLEKVLNELKKDFKQL  68

Query  64   LKEQRAALDGWQRALTTLESIPAPKVFPFLGRPSTPKEHRDRPTGTLRDFVDANEVQKAG  123
            LK+  AAL+  +  L  L + P     P        ++ +     TL DF+D + V+   
Sbjct  69   LKDLDAALERLEETLDKLRNTPVEPALP-----PGEEKQK-----TLLDFIDEDSVEILR  118

Query  124  AEAAAESSRFARQIDDVAEAVRGITADTQRLID--DQLPSGADAADG-----------LQ  170
                          + +   ++    D + L    + L S +++               +
Sbjct  119  DALKELIDELQAAQESLDSDLKRFDDDLRDLQKELESLSSPSESISLIPTLLKELESLEE  178

Query  171  EMITFAKKISSDYEH-VIALPNNQKTLANISRLALTHTQDL---LPSMLDISAEI---HA  223
            EM +  + +++ Y+  V A+   +   A +  +     ++L   +P + D   E+   + 
Sbjct  179  EMASLLESLTNHYDQCVTAVKLTEGGRAEMLEVLENDARELDDVVPELQDRLDEMENNYE  238

Query  224  GLEEAVRRHNTAMKVALDHMRTISAIELRLADVQSQIINLNVQ------------SDAFD  271
             L++ + + N+ +   L  ++ I+ I+ RL +  + +     +            S+  D
Sbjct  239  RLQKLLEQKNSLIDELLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETIEDYLSELED  298

Query  272  VVFSVYHMPMVYGSILVESVRRREFNEKMKADSLTLAEEMAVFRDEEQRRRKKWLKSMGD  331
            +       P  YGS+L+E  RRRE+ EKMK     LAEE+   ++EE++RR+K+LK +GD
Sbjct  299  LREFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRREKFLKEVGD  358

Query  332  FI  333
            F+
Sbjct  359  FL  360



Lambda      K        H        a         alpha
   0.312    0.127    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1478616042


Query= TCONS_00022657

Length=1198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463063 pfam10377, ATG11, Autophagy-related protein 11. The fu...  206     2e-62
CDD:427715 pfam04108, APG17, Autophagy protein Apg17. Apg17 is re...  151     2e-40


>CDD:463063 pfam10377, ATG11, Autophagy-related protein 11.  The function 
of this family is conflicting. In the fission yeast, Schizosaccharomyces 
pombe, this protein has been shown to interact 
with the telomere cap complex. However, in budding yeast, Saccharomyces 
cerevisiae, this protein is called ATG11 and is 
shown to be involved in autophagy.
Length=130

 Score = 206 bits (527),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 73/150 (49%), Positives = 92/150 (61%), Gaps = 24/150 (16%)

Query  946   DAVVKRVKDIELLARKWQKEARGYRDKYHRMQSEAHDKIAYRSFKEGDLALFLPTR---N  1002
              AV+KR KD+E LA+K  KE +  R+K  ++QSEAH+KI  ++FK GDLALFLPTR   +
Sbjct  2     SAVIKRFKDVETLAKKLTKENKSKREKLEKLQSEAHEKITLKNFKVGDLALFLPTRRHND  61

Query  1003  QAIRSWAAFNVGAPHYFLREQDAHKLQTRDWLLARITKIEERVVDLSKSMNGAHPDRRSI  1062
              +   WAAFNVGAPHYFL+      L++R+W + RIT IEERVVDL              
Sbjct  62    LSTPPWAAFNVGAPHYFLKADSLLALKSREWFVGRITSIEERVVDL--------------  107

Query  1063  GGTSDAASIDDENPFELSDGLRWYLLDANE  1092
                    S  D NPF+LS G  WYL+ A E
Sbjct  108   -------SDKDSNPFKLSKGTVWYLVTAEE  130


>CDD:427715 pfam04108, APG17, Autophagy protein Apg17.  Apg17 is required 
for activating Apg1 protein kinases.
Length=360

 Score = 151 bits (384),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 78/362 (22%), Positives = 151/362 (42%), Gaps = 42/362 (12%)

Query  4    RSWALGLVERCGAMDKSIHEHNERTDIIHRAAGVALENLKTHVGNLENRFQEAQTWANDL  63
              WA  L+    ++ + +     +   + R   V L NL+     LE    E +     L
Sbjct  9    CRWANELLTDARSLLEELVVLLAKIAFLRRGLSVQLANLEKVREGLEKVLNELKKDFKQL  68

Query  64   LKEQRAALDGWQRALTTLESIPAPKVFPFLGRPSTPKEHRDRPTGTLRDFVDANEVQKAG  123
            LK+  AAL+  +  L  L + P     P        ++ +     TL DF+D + V+   
Sbjct  69   LKDLDAALERLEETLDKLRNTPVEPALP-----PGEEKQK-----TLLDFIDEDSVEILR  118

Query  124  AEAAAESSRFARQIDDVAEAVRGITADTQRLID--DQLPSGADAADG-----------LQ  170
                          + +   ++    D + L    + L S +++               +
Sbjct  119  DALKELIDELQAAQESLDSDLKRFDDDLRDLQKELESLSSPSESISLIPTLLKELESLEE  178

Query  171  EMITFAKKISSDYEH-VIALPNNQKTLANISRLALTHTQDL---LPSMLDISAEI---HA  223
            EM +  + +++ Y+  V A+   +   A +  +     ++L   +P + D   E+   + 
Sbjct  179  EMASLLESLTNHYDQCVTAVKLTEGGRAEMLEVLENDARELDDVVPELQDRLDEMENNYE  238

Query  224  GLEEAVRRHNTAMKVALDHMRTISAIELRLADVQSQIINLNVQ------------SDAFD  271
             L++ + + N+ +   L  ++ I+ I+ RL +  + +     +            S+  D
Sbjct  239  RLQKLLEQKNSLIDELLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETIEDYLSELED  298

Query  272  VVFSVYHMPMVYGSILVESVRRREFNEKMKADSLTLAEEMAVFRDEEQRRRKKWLKSMGD  331
            +       P  YGS+L+E  RRRE+ EKMK     LAEE+   ++EE++RR+K+LK +GD
Sbjct  299  LREFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRREKFLKEVGD  358

Query  332  FI  333
            F+
Sbjct  359  FL  360



Lambda      K        H        a         alpha
   0.312    0.127    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1537258038


Query= TCONS_00027252

Length=1150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463063 pfam10377, ATG11, Autophagy-related protein 11. The fu...  182     6e-54
CDD:427715 pfam04108, APG17, Autophagy protein Apg17. Apg17 is re...  150     7e-40


>CDD:463063 pfam10377, ATG11, Autophagy-related protein 11.  The function 
of this family is conflicting. In the fission yeast, Schizosaccharomyces 
pombe, this protein has been shown to interact 
with the telomere cap complex. However, in budding yeast, Saccharomyces 
cerevisiae, this protein is called ATG11 and is 
shown to be involved in autophagy.
Length=130

 Score = 182 bits (464),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 61/109 (56%), Positives = 78/109 (72%), Gaps = 3/109 (3%)

Query  946   DAVVKRVKDIELLARKWQKEARGYRDKYHRMQSEAHDKIAYRSFKEGDLALFLPTR---N  1002
              AV+KR KD+E LA+K  KE +  R+K  ++QSEAH+KI  ++FK GDLALFLPTR   +
Sbjct  2     SAVIKRFKDVETLAKKLTKENKSKREKLEKLQSEAHEKITLKNFKVGDLALFLPTRRHND  61

Query  1003  QAIRSWAAFNVGAPHYFLREQDAHKLQTRDWLLARITKIEERVVDLSKS  1051
              +   WAAFNVGAPHYFL+      L++R+W + RIT IEERVVDLS  
Sbjct  62    LSTPPWAAFNVGAPHYFLKADSLLALKSREWFVGRITSIEERVVDLSDK  110


>CDD:427715 pfam04108, APG17, Autophagy protein Apg17.  Apg17 is required 
for activating Apg1 protein kinases.
Length=360

 Score = 150 bits (380),  Expect = 7e-40, Method: Composition-based stats.
 Identities = 78/362 (22%), Positives = 151/362 (42%), Gaps = 42/362 (12%)

Query  4    RSWALGLVERCGAMDKSIHEHNERTDIIHRAAGVALENLKTHVGNLENRFQEAQTWANDL  63
              WA  L+    ++ + +     +   + R   V L NL+     LE    E +     L
Sbjct  9    CRWANELLTDARSLLEELVVLLAKIAFLRRGLSVQLANLEKVREGLEKVLNELKKDFKQL  68

Query  64   LKEQRAALDGWQRALTTLESIPAPKVFPFLGRPSTPKEHRDRPTGTLRDFVDANEVQKAG  123
            LK+  AAL+  +  L  L + P     P        ++ +     TL DF+D + V+   
Sbjct  69   LKDLDAALERLEETLDKLRNTPVEPALP-----PGEEKQK-----TLLDFIDEDSVEILR  118

Query  124  AEAAAESSRFARQIDDVAEAVRGITADTQRLID--DQLPSGADAADG-----------LQ  170
                          + +   ++    D + L    + L S +++               +
Sbjct  119  DALKELIDELQAAQESLDSDLKRFDDDLRDLQKELESLSSPSESISLIPTLLKELESLEE  178

Query  171  EMITFAKKISSDYEH-VIALPNNQKTLANISRLALTHTQDL---LPSMLDISAEI---HA  223
            EM +  + +++ Y+  V A+   +   A +  +     ++L   +P + D   E+   + 
Sbjct  179  EMASLLESLTNHYDQCVTAVKLTEGGRAEMLEVLENDARELDDVVPELQDRLDEMENNYE  238

Query  224  GLEEAVRRHNTAMKVALDHMRTISAIELRLADVQSQIINLNVQ------------SDAFD  271
             L++ + + N+ +   L  ++ I+ I+ RL +  + +     +            S+  D
Sbjct  239  RLQKLLEQKNSLIDELLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETIEDYLSELED  298

Query  272  VVFSVYHMPMVYGSILVESVRRREFNEKMKADSLTLAEEMAVFRDEEQRRRKKWLKSMGD  331
            +       P  YGS+L+E  RRRE+ EKMK     LAEE+   ++EE++RR+K+LK +GD
Sbjct  299  LREFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRREKFLKEVGD  358

Query  332  FI  333
            F+
Sbjct  359  FL  360



Lambda      K        H        a         alpha
   0.312    0.127    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1470238614


Query= TCONS_00022654

Length=1198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463063 pfam10377, ATG11, Autophagy-related protein 11. The fu...  206     2e-62
CDD:427715 pfam04108, APG17, Autophagy protein Apg17. Apg17 is re...  151     2e-40


>CDD:463063 pfam10377, ATG11, Autophagy-related protein 11.  The function 
of this family is conflicting. In the fission yeast, Schizosaccharomyces 
pombe, this protein has been shown to interact 
with the telomere cap complex. However, in budding yeast, Saccharomyces 
cerevisiae, this protein is called ATG11 and is 
shown to be involved in autophagy.
Length=130

 Score = 206 bits (527),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 73/150 (49%), Positives = 92/150 (61%), Gaps = 24/150 (16%)

Query  946   DAVVKRVKDIELLARKWQKEARGYRDKYHRMQSEAHDKIAYRSFKEGDLALFLPTR---N  1002
              AV+KR KD+E LA+K  KE +  R+K  ++QSEAH+KI  ++FK GDLALFLPTR   +
Sbjct  2     SAVIKRFKDVETLAKKLTKENKSKREKLEKLQSEAHEKITLKNFKVGDLALFLPTRRHND  61

Query  1003  QAIRSWAAFNVGAPHYFLREQDAHKLQTRDWLLARITKIEERVVDLSKSMNGAHPDRRSI  1062
              +   WAAFNVGAPHYFL+      L++R+W + RIT IEERVVDL              
Sbjct  62    LSTPPWAAFNVGAPHYFLKADSLLALKSREWFVGRITSIEERVVDL--------------  107

Query  1063  GGTSDAASIDDENPFELSDGLRWYLLDANE  1092
                    S  D NPF+LS G  WYL+ A E
Sbjct  108   -------SDKDSNPFKLSKGTVWYLVTAEE  130


>CDD:427715 pfam04108, APG17, Autophagy protein Apg17.  Apg17 is required 
for activating Apg1 protein kinases.
Length=360

 Score = 151 bits (384),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 78/362 (22%), Positives = 151/362 (42%), Gaps = 42/362 (12%)

Query  4    RSWALGLVERCGAMDKSIHEHNERTDIIHRAAGVALENLKTHVGNLENRFQEAQTWANDL  63
              WA  L+    ++ + +     +   + R   V L NL+     LE    E +     L
Sbjct  9    CRWANELLTDARSLLEELVVLLAKIAFLRRGLSVQLANLEKVREGLEKVLNELKKDFKQL  68

Query  64   LKEQRAALDGWQRALTTLESIPAPKVFPFLGRPSTPKEHRDRPTGTLRDFVDANEVQKAG  123
            LK+  AAL+  +  L  L + P     P        ++ +     TL DF+D + V+   
Sbjct  69   LKDLDAALERLEETLDKLRNTPVEPALP-----PGEEKQK-----TLLDFIDEDSVEILR  118

Query  124  AEAAAESSRFARQIDDVAEAVRGITADTQRLID--DQLPSGADAADG-----------LQ  170
                          + +   ++    D + L    + L S +++               +
Sbjct  119  DALKELIDELQAAQESLDSDLKRFDDDLRDLQKELESLSSPSESISLIPTLLKELESLEE  178

Query  171  EMITFAKKISSDYEH-VIALPNNQKTLANISRLALTHTQDL---LPSMLDISAEI---HA  223
            EM +  + +++ Y+  V A+   +   A +  +     ++L   +P + D   E+   + 
Sbjct  179  EMASLLESLTNHYDQCVTAVKLTEGGRAEMLEVLENDARELDDVVPELQDRLDEMENNYE  238

Query  224  GLEEAVRRHNTAMKVALDHMRTISAIELRLADVQSQIINLNVQ------------SDAFD  271
             L++ + + N+ +   L  ++ I+ I+ RL +  + +     +            S+  D
Sbjct  239  RLQKLLEQKNSLIDELLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETIEDYLSELED  298

Query  272  VVFSVYHMPMVYGSILVESVRRREFNEKMKADSLTLAEEMAVFRDEEQRRRKKWLKSMGD  331
            +       P  YGS+L+E  RRRE+ EKMK     LAEE+   ++EE++RR+K+LK +GD
Sbjct  299  LREFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRREKFLKEVGD  358

Query  332  FI  333
            F+
Sbjct  359  FL  360



Lambda      K        H        a         alpha
   0.312    0.127    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1537258038


Query= TCONS_00022655

Length=1198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463063 pfam10377, ATG11, Autophagy-related protein 11. The fu...  206     2e-62
CDD:427715 pfam04108, APG17, Autophagy protein Apg17. Apg17 is re...  151     2e-40


>CDD:463063 pfam10377, ATG11, Autophagy-related protein 11.  The function 
of this family is conflicting. In the fission yeast, Schizosaccharomyces 
pombe, this protein has been shown to interact 
with the telomere cap complex. However, in budding yeast, Saccharomyces 
cerevisiae, this protein is called ATG11 and is 
shown to be involved in autophagy.
Length=130

 Score = 206 bits (527),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 73/150 (49%), Positives = 92/150 (61%), Gaps = 24/150 (16%)

Query  946   DAVVKRVKDIELLARKWQKEARGYRDKYHRMQSEAHDKIAYRSFKEGDLALFLPTR---N  1002
              AV+KR KD+E LA+K  KE +  R+K  ++QSEAH+KI  ++FK GDLALFLPTR   +
Sbjct  2     SAVIKRFKDVETLAKKLTKENKSKREKLEKLQSEAHEKITLKNFKVGDLALFLPTRRHND  61

Query  1003  QAIRSWAAFNVGAPHYFLREQDAHKLQTRDWLLARITKIEERVVDLSKSMNGAHPDRRSI  1062
              +   WAAFNVGAPHYFL+      L++R+W + RIT IEERVVDL              
Sbjct  62    LSTPPWAAFNVGAPHYFLKADSLLALKSREWFVGRITSIEERVVDL--------------  107

Query  1063  GGTSDAASIDDENPFELSDGLRWYLLDANE  1092
                    S  D NPF+LS G  WYL+ A E
Sbjct  108   -------SDKDSNPFKLSKGTVWYLVTAEE  130


>CDD:427715 pfam04108, APG17, Autophagy protein Apg17.  Apg17 is required 
for activating Apg1 protein kinases.
Length=360

 Score = 151 bits (384),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 78/362 (22%), Positives = 151/362 (42%), Gaps = 42/362 (12%)

Query  4    RSWALGLVERCGAMDKSIHEHNERTDIIHRAAGVALENLKTHVGNLENRFQEAQTWANDL  63
              WA  L+    ++ + +     +   + R   V L NL+     LE    E +     L
Sbjct  9    CRWANELLTDARSLLEELVVLLAKIAFLRRGLSVQLANLEKVREGLEKVLNELKKDFKQL  68

Query  64   LKEQRAALDGWQRALTTLESIPAPKVFPFLGRPSTPKEHRDRPTGTLRDFVDANEVQKAG  123
            LK+  AAL+  +  L  L + P     P        ++ +     TL DF+D + V+   
Sbjct  69   LKDLDAALERLEETLDKLRNTPVEPALP-----PGEEKQK-----TLLDFIDEDSVEILR  118

Query  124  AEAAAESSRFARQIDDVAEAVRGITADTQRLID--DQLPSGADAADG-----------LQ  170
                          + +   ++    D + L    + L S +++               +
Sbjct  119  DALKELIDELQAAQESLDSDLKRFDDDLRDLQKELESLSSPSESISLIPTLLKELESLEE  178

Query  171  EMITFAKKISSDYEH-VIALPNNQKTLANISRLALTHTQDL---LPSMLDISAEI---HA  223
            EM +  + +++ Y+  V A+   +   A +  +     ++L   +P + D   E+   + 
Sbjct  179  EMASLLESLTNHYDQCVTAVKLTEGGRAEMLEVLENDARELDDVVPELQDRLDEMENNYE  238

Query  224  GLEEAVRRHNTAMKVALDHMRTISAIELRLADVQSQIINLNVQ------------SDAFD  271
             L++ + + N+ +   L  ++ I+ I+ RL +  + +     +            S+  D
Sbjct  239  RLQKLLEQKNSLIDELLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETIEDYLSELED  298

Query  272  VVFSVYHMPMVYGSILVESVRRREFNEKMKADSLTLAEEMAVFRDEEQRRRKKWLKSMGD  331
            +       P  YGS+L+E  RRRE+ EKMK     LAEE+   ++EE++RR+K+LK +GD
Sbjct  299  LREFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRREKFLKEVGD  358

Query  332  FI  333
            F+
Sbjct  359  FL  360



Lambda      K        H        a         alpha
   0.312    0.127    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0912    0.140     1.90     42.6     43.6 

Effective search space used: 1537258038


Query= TCONS_00022656

Length=985
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463063 pfam10377, ATG11, Autophagy-related protein 11. The fu...  205     2e-62
CDD:427715 pfam04108, APG17, Autophagy protein Apg17. Apg17 is re...  82.1    5e-17


>CDD:463063 pfam10377, ATG11, Autophagy-related protein 11.  The function 
of this family is conflicting. In the fission yeast, Schizosaccharomyces 
pombe, this protein has been shown to interact 
with the telomere cap complex. However, in budding yeast, Saccharomyces 
cerevisiae, this protein is called ATG11 and is 
shown to be involved in autophagy.
Length=130

 Score = 205 bits (525),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 73/150 (49%), Positives = 92/150 (61%), Gaps = 24/150 (16%)

Query  733  DAVVKRVKDIELLARKWQKEARGYRDKYHRMQSEAHDKIAYRSFKEGDLALFLPTR---N  789
             AV+KR KD+E LA+K  KE +  R+K  ++QSEAH+KI  ++FK GDLALFLPTR   +
Sbjct  2    SAVIKRFKDVETLAKKLTKENKSKREKLEKLQSEAHEKITLKNFKVGDLALFLPTRRHND  61

Query  790  QAIRSWAAFNVGAPHYFLREQDAHKLQTRDWLLARITKIEERVVDLSKSMNGAHPDRRSI  849
             +   WAAFNVGAPHYFL+      L++R+W + RIT IEERVVDL              
Sbjct  62   LSTPPWAAFNVGAPHYFLKADSLLALKSREWFVGRITSIEERVVDL--------------  107

Query  850  GGTSDAASIDDENPFELSDGLRWYLLDANE  879
                   S  D NPF+LS G  WYL+ A E
Sbjct  108  -------SDKDSNPFKLSKGTVWYLVTAEE  130


>CDD:427715 pfam04108, APG17, Autophagy protein Apg17.  Apg17 is required 
for activating Apg1 protein kinases.
Length=360

 Score = 82.1 bits (203),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 39/131 (30%), Positives = 68/131 (52%), Gaps = 12/131 (9%)

Query  2    LDISAEIHAGLEEAVRRHNTAMKVALDHMRTISAIELRLADVQSQIINLNVQ--------  53
            LD     +  L++ + + N+ +   L  ++ I+ I+ RL +  + +     +        
Sbjct  230  LDEMENNYERLQKLLEQKNSLIDELLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETI  289

Query  54   ----SDAFDVVFSVYHMPMVYGSILVESVRRREFNEKMKADSLTLAEEMAVFRDEEQRRR  109
                S+  D+       P  YGS+L+E  RRRE+ EKMK     LAEE+   ++EE++RR
Sbjct  290  EDYLSELEDLREFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRR  349

Query  110  KKWLKSMGDFI  120
            +K+LK +GDF+
Sbjct  350  EKFLKEVGDFL  360



Lambda      K        H        a         alpha
   0.311    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1258713764


Query= TCONS_00027253

Length=937
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463063 pfam10377, ATG11, Autophagy-related protein 11. The fu...  181     7e-54
CDD:427715 pfam04108, APG17, Autophagy protein Apg17. Apg17 is re...  80.9    1e-16


>CDD:463063 pfam10377, ATG11, Autophagy-related protein 11.  The function 
of this family is conflicting. In the fission yeast, Schizosaccharomyces 
pombe, this protein has been shown to interact 
with the telomere cap complex. However, in budding yeast, Saccharomyces 
cerevisiae, this protein is called ATG11 and is 
shown to be involved in autophagy.
Length=130

 Score = 181 bits (462),  Expect = 7e-54, Method: Composition-based stats.
 Identities = 61/109 (56%), Positives = 78/109 (72%), Gaps = 3/109 (3%)

Query  733  DAVVKRVKDIELLARKWQKEARGYRDKYHRMQSEAHDKIAYRSFKEGDLALFLPTR---N  789
             AV+KR KD+E LA+K  KE +  R+K  ++QSEAH+KI  ++FK GDLALFLPTR   +
Sbjct  2    SAVIKRFKDVETLAKKLTKENKSKREKLEKLQSEAHEKITLKNFKVGDLALFLPTRRHND  61

Query  790  QAIRSWAAFNVGAPHYFLREQDAHKLQTRDWLLARITKIEERVVDLSKS  838
             +   WAAFNVGAPHYFL+      L++R+W + RIT IEERVVDLS  
Sbjct  62   LSTPPWAAFNVGAPHYFLKADSLLALKSREWFVGRITSIEERVVDLSDK  110


>CDD:427715 pfam04108, APG17, Autophagy protein Apg17.  Apg17 is required 
for activating Apg1 protein kinases.
Length=360

 Score = 80.9 bits (200),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 39/131 (30%), Positives = 68/131 (52%), Gaps = 12/131 (9%)

Query  2    LDISAEIHAGLEEAVRRHNTAMKVALDHMRTISAIELRLADVQSQIINLNVQ--------  53
            LD     +  L++ + + N+ +   L  ++ I+ I+ RL +  + +     +        
Sbjct  230  LDEMENNYERLQKLLEQKNSLIDELLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETI  289

Query  54   ----SDAFDVVFSVYHMPMVYGSILVESVRRREFNEKMKADSLTLAEEMAVFRDEEQRRR  109
                S+  D+       P  YGS+L+E  RRRE+ EKMK     LAEE+   ++EE++RR
Sbjct  290  EDYLSELEDLREFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRR  349

Query  110  KKWLKSMGDFI  120
            +K+LK +GDF+
Sbjct  350  EKFLKEVGDFL  360



Lambda      K        H        a         alpha
   0.311    0.126    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1208702788


Query= TCONS_00022658

Length=1156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463063 pfam10377, ATG11, Autophagy-related protein 11. The fu...  206     3e-62
CDD:427715 pfam04108, APG17, Autophagy protein Apg17. Apg17 is re...  109     4e-26


>CDD:463063 pfam10377, ATG11, Autophagy-related protein 11.  The function 
of this family is conflicting. In the fission yeast, Schizosaccharomyces 
pombe, this protein has been shown to interact 
with the telomere cap complex. However, in budding yeast, Saccharomyces 
cerevisiae, this protein is called ATG11 and is 
shown to be involved in autophagy.
Length=130

 Score = 206 bits (526),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 73/150 (49%), Positives = 92/150 (61%), Gaps = 24/150 (16%)

Query  904   DAVVKRVKDIELLARKWQKEARGYRDKYHRMQSEAHDKIAYRSFKEGDLALFLPTR---N  960
              AV+KR KD+E LA+K  KE +  R+K  ++QSEAH+KI  ++FK GDLALFLPTR   +
Sbjct  2     SAVIKRFKDVETLAKKLTKENKSKREKLEKLQSEAHEKITLKNFKVGDLALFLPTRRHND  61

Query  961   QAIRSWAAFNVGAPHYFLREQDAHKLQTRDWLLARITKIEERVVDLSKSMNGAHPDRRSI  1020
              +   WAAFNVGAPHYFL+      L++R+W + RIT IEERVVDL              
Sbjct  62    LSTPPWAAFNVGAPHYFLKADSLLALKSREWFVGRITSIEERVVDL--------------  107

Query  1021  GGTSDAASIDDENPFELSDGLRWYLLDANE  1050
                    S  D NPF+LS G  WYL+ A E
Sbjct  108   -------SDKDSNPFKLSKGTVWYLVTAEE  130


>CDD:427715 pfam04108, APG17, Autophagy protein Apg17.  Apg17 is required 
for activating Apg1 protein kinases.
Length=360

 Score = 109 bits (275),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 69/362 (19%), Positives = 134/362 (37%), Gaps = 84/362 (23%)

Query  4    RSWALGLVERCGAMDKSIHEHNERTDIIHRAAGVALENL---------------------  42
              WA  L+    ++ + +     +   + R   V L NL                     
Sbjct  9    CRWANELLTDARSLLEELVVLLAKIAFLRRGLSVQLANLEKVREGLEKVLNELKKDFKQL  68

Query  43   LKEQRAALDGWQRALTTLESIPAPKVFPFLGRPSTPKEHRDRPTGTLRDFVDANEVQKAG  102
            LK+  AAL+  +  L  L + P     P        ++ +     TL DF+D + V+   
Sbjct  69   LKDLDAALERLEETLDKLRNTPVEPALP-----PGEEKQK-----TLLDFIDEDSVEILR  118

Query  103  AEAAAESSRFARQIDDVAEAVRGITADTQR------------------------------  132
                          + +   ++    D +                               
Sbjct  119  DALKELIDELQAAQESLDSDLKRFDDDLRDLQKELESLSSPSESISLIPTLLKELESLEE  178

Query  133  ----FAKKISSDYEH-VIALPNNQKTLANISRLALTHTQDL---LPSMLDISAEI---HA  181
                  + +++ Y+  V A+   +   A +  +     ++L   +P + D   E+   + 
Sbjct  179  EMASLLESLTNHYDQCVTAVKLTEGGRAEMLEVLENDARELDDVVPELQDRLDEMENNYE  238

Query  182  GLEEAVRRHNTAMKVALDHMRTISAIELRLADVQSQIINLNVQ------------SDAFD  229
             L++ + + N+ +   L  ++ I+ I+ RL +  + +     +            S+  D
Sbjct  239  RLQKLLEQKNSLIDELLSALQLIAEIQSRLPEYLAALKEFEERWEEEKETIEDYLSELED  298

Query  230  VVFSVYHMPMVYGSILVESVRRREFNEKMKADSLTLAEEMAVFRDEEQRRRKKWLKSMGD  289
            +       P  YGS+L+E  RRRE+ EKMK     LAEE+   ++EE++RR+K+LK +GD
Sbjct  299  LREFYEGFPSAYGSLLLEVERRREWAEKMKKILRKLAEELDRLQEEERKRREKFLKEVGD  358

Query  290  FI  291
            F+
Sbjct  359  FL  360



Lambda      K        H        a         alpha
   0.312    0.127    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1478616042


Query= TCONS_00027254

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00027255

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00022659

Length=96
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box          75.7    2e-20
CDD:430369 pfam09011, HMG_box_2, HMG-box domain. This short 71 re...  58.6    1e-13


>CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box.  
Length=68

 Score = 75.7 bits (187),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 49/68 (72%), Gaps = 0/68 (0%)

Query  25  PKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSDSERRPYEEKAAADKKR  84
           PKR +SA+  F+ E R K++ ENPG+   ++ K+LGE+WKALS+ E++PYEEKA  +K R
Sbjct  1   PKRPMSAFFLFSKEQRAKLKAENPGLKNAEISKILGEKWKALSEEEKKPYEEKAEKEKAR  60

Query  85  YEDEKASY  92
           YE E   Y
Sbjct  61  YEKEHPEY  68


>CDD:430369 pfam09011, HMG_box_2, HMG-box domain.  This short 71 residue 
domain is an HMG-box domain. HMG-box domains mediate re-modelling 
of chromatin-structure. Mammalian HMG-box proteins are 
of two types: those that are non-sequence-specific DNA-binding 
proteins with two HMG-box domains and a long highly acidic 
C-tail; and a diverse group of sequence-specific transcription 
factor-proteins with either a single HMG-box or up to 
six copies, and no acidic C-tail.
Length=72

 Score = 58.6 bits (142),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 33/72 (46%), Positives = 44/72 (61%), Gaps = 0/72 (0%)

Query  22  PNAPKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSDSERRPYEEKAAAD  81
           PN PKR  +AY FF  E   + + +NP I F +V K+  ERWK LS+ E+  YEE A  D
Sbjct  1   PNKPKRARNAYAFFVQEMIPEHKRQNPVIGFAEVSKLCSERWKNLSEEEKEKYEEMAKED  60

Query  82  KKRYEDEKASYN  93
           K RY+ E  +Y+
Sbjct  61  KNRYDREMGTYD  72



Lambda      K        H        a         alpha
   0.307    0.124    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00022660

Length=104
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box          75.7    3e-20
CDD:430369 pfam09011, HMG_box_2, HMG-box domain. This short 71 re...  57.8    3e-13


>CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box.  
Length=68

 Score = 75.7 bits (187),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 49/68 (72%), Gaps = 0/68 (0%)

Query  25  PKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSDSERRPYEEKAAADKKR  84
           PKR +SA+  F+ E R K++ ENPG+   ++ K+LGE+WKALS+ E++PYEEKA  +K R
Sbjct  1   PKRPMSAFFLFSKEQRAKLKAENPGLKNAEISKILGEKWKALSEEEKKPYEEKAEKEKAR  60

Query  85  YEDEKASY  92
           YE E   Y
Sbjct  61  YEKEHPEY  68


>CDD:430369 pfam09011, HMG_box_2, HMG-box domain.  This short 71 residue 
domain is an HMG-box domain. HMG-box domains mediate re-modelling 
of chromatin-structure. Mammalian HMG-box proteins are 
of two types: those that are non-sequence-specific DNA-binding 
proteins with two HMG-box domains and a long highly acidic 
C-tail; and a diverse group of sequence-specific transcription 
factor-proteins with either a single HMG-box or up to 
six copies, and no acidic C-tail.
Length=72

 Score = 57.8 bits (140),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 33/72 (46%), Positives = 44/72 (61%), Gaps = 0/72 (0%)

Query  22  PNAPKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSDSERRPYEEKAAAD  81
           PN PKR  +AY FF  E   + + +NP I F +V K+  ERWK LS+ E+  YEE A  D
Sbjct  1   PNKPKRARNAYAFFVQEMIPEHKRQNPVIGFAEVSKLCSERWKNLSEEEKEKYEEMAKED  60

Query  82  KKRYEDEKASYN  93
           K RY+ E  +Y+
Sbjct  61  KNRYDREMGTYD  72



Lambda      K        H        a         alpha
   0.304    0.122    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00022661

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00022662

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00022663

Length=104
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box          75.7    3e-20
CDD:430369 pfam09011, HMG_box_2, HMG-box domain. This short 71 re...  57.8    3e-13


>CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box.  
Length=68

 Score = 75.7 bits (187),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 49/68 (72%), Gaps = 0/68 (0%)

Query  25  PKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSDSERRPYEEKAAADKKR  84
           PKR +SA+  F+ E R K++ ENPG+   ++ K+LGE+WKALS+ E++PYEEKA  +K R
Sbjct  1   PKRPMSAFFLFSKEQRAKLKAENPGLKNAEISKILGEKWKALSEEEKKPYEEKAEKEKAR  60

Query  85  YEDEKASY  92
           YE E   Y
Sbjct  61  YEKEHPEY  68


>CDD:430369 pfam09011, HMG_box_2, HMG-box domain.  This short 71 residue 
domain is an HMG-box domain. HMG-box domains mediate re-modelling 
of chromatin-structure. Mammalian HMG-box proteins are 
of two types: those that are non-sequence-specific DNA-binding 
proteins with two HMG-box domains and a long highly acidic 
C-tail; and a diverse group of sequence-specific transcription 
factor-proteins with either a single HMG-box or up to 
six copies, and no acidic C-tail.
Length=72

 Score = 57.8 bits (140),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 33/72 (46%), Positives = 44/72 (61%), Gaps = 0/72 (0%)

Query  22  PNAPKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSDSERRPYEEKAAAD  81
           PN PKR  +AY FF  E   + + +NP I F +V K+  ERWK LS+ E+  YEE A  D
Sbjct  1   PNKPKRARNAYAFFVQEMIPEHKRQNPVIGFAEVSKLCSERWKNLSEEEKEKYEEMAKED  60

Query  82  KKRYEDEKASYN  93
           K RY+ E  +Y+
Sbjct  61  KNRYDREMGTYD  72



Lambda      K        H        a         alpha
   0.304    0.122    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00027257

Length=90
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box          73.0    1e-19
CDD:430369 pfam09011, HMG_box_2, HMG-box domain. This short 71 re...  57.4    3e-13


>CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box.  
Length=68

 Score = 73.0 bits (180),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 34/66 (52%), Positives = 48/66 (73%), Gaps = 0/66 (0%)

Query  25  PKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSDSERRPYEEKAAADKKR  84
           PKR +SA+  F+ E R K++ ENPG+   ++ K+LGE+WKALS+ E++PYEEKA  +K R
Sbjct  1   PKRPMSAFFLFSKEQRAKLKAENPGLKNAEISKILGEKWKALSEEEKKPYEEKAEKEKAR  60

Query  85  YEDEKA  90
           YE E  
Sbjct  61  YEKEHP  66


>CDD:430369 pfam09011, HMG_box_2, HMG-box domain.  This short 71 residue 
domain is an HMG-box domain. HMG-box domains mediate re-modelling 
of chromatin-structure. Mammalian HMG-box proteins are 
of two types: those that are non-sequence-specific DNA-binding 
proteins with two HMG-box domains and a long highly acidic 
C-tail; and a diverse group of sequence-specific transcription 
factor-proteins with either a single HMG-box or up to 
six copies, and no acidic C-tail.
Length=72

 Score = 57.4 bits (139),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 32/67 (48%), Positives = 41/67 (61%), Gaps = 0/67 (0%)

Query  22  PNAPKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSDSERRPYEEKAAAD  81
           PN PKR  +AY FF  E   + + +NP I F +V K+  ERWK LS+ E+  YEE A  D
Sbjct  1   PNKPKRARNAYAFFVQEMIPEHKRQNPVIGFAEVSKLCSERWKNLSEEEKEKYEEMAKED  60

Query  82  KKRYEDE  88
           K RY+ E
Sbjct  61  KNRYDRE  67



Lambda      K        H        a         alpha
   0.308    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00022664

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463837 pfam13300, DUF4078, Domain of unknown function (DUF407...  92.6    5e-24


>CDD:463837 pfam13300, DUF4078, Domain of unknown function (DUF4078).  This 
family is found from fungi to humans, but its exact function 
is not known.
Length=86

 Score = 92.6 bits (231),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 43/79 (54%), Positives = 57/79 (72%), Gaps = 0/79 (0%)

Query  268  RRDRSPTPPEETHYDADAEVRNRGTAFYAFAKDEETRRKQMEELMSAREETQREREARQA  327
            +RDRS TPP   HYDAD E+R +G  FYAF+KDEE R+KQMEEL   REET+ +R+ R+ 
Sbjct  8    KRDRSATPPGPIHYDADKEIRTKGVGFYAFSKDEEERKKQMEELEELREETEEQRKEREE  67

Query  328  RRVERQRVKEERRRQIEEL  346
             + +R+   EERR++I E 
Sbjct  68   LKEKRKAELEERRKKIRER  86



Lambda      K        H        a         alpha
   0.310    0.124    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00022665

Length=304


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00022666

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00027258

Length=469


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581273816


Query= TCONS_00027261

Length=530


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 664674974


Query= TCONS_00027260

Length=457


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 562869368


Query= TCONS_00027262

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459921 pfam00742, Homoserine_dh, Homoserine dehydrogenase         178     6e-56


>CDD:459921 pfam00742, Homoserine_dh, Homoserine dehydrogenase.  
Length=178

 Score = 178 bits (454),  Expect = 6e-56, Method: Composition-based stats.
 Identities = 67/187 (36%), Positives = 95/187 (51%), Gaps = 34/187 (18%)

Query  153  PVISTLRDLVATGDEVTRIEGVFSGTLSFLFNTFAPVSGASNAKWSEVVAQAKELGYTEP  212
            P+I TLR L   GD +TRIEG+ +GT +++              +SE + +A+ELGY E 
Sbjct  1    PIIRTLR-LSLAGDRITRIEGILNGTTNYILTRME----EEGLSFSEALKEAQELGYAEA  55

Query  213  DPRDDLNGMDVARKLTILARIA-GLEVQGPDSFPIESLIPAELASLPSTADGISQFMTKL  271
            DP DD+ G+D ARKL ILAR+A GL+V+  +   +E +                   T+L
Sbjct  56   DPTDDVEGIDAARKLAILARLAFGLDVE-LEDVEVEGI-------------------TRL  95

Query  272  PSFDSQMAAIKEGAEKQGKVVRYVGSVDVA--KKEVRVGLQQFDKDSAIAGLKGSDNIIS  329
             + D     I   A++ GKV++ V S        E RVG     KD  +A +KG DN + 
Sbjct  96   TAED-----IAY-AKELGKVIKLVASAKRDDGGVEARVGPTLVPKDHPLASVKGVDNAVV  149

Query  330  FYTKRYG  336
              T RYG
Sbjct  150  IETDRYG  156



Lambda      K        H        a         alpha
   0.314    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00027263

Length=304


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00027265

Length=258


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00022667

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463837 pfam13300, DUF4078, Domain of unknown function (DUF407...  92.6    5e-24


>CDD:463837 pfam13300, DUF4078, Domain of unknown function (DUF4078).  This 
family is found from fungi to humans, but its exact function 
is not known.
Length=86

 Score = 92.6 bits (231),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 43/79 (54%), Positives = 57/79 (72%), Gaps = 0/79 (0%)

Query  268  RRDRSPTPPEETHYDADAEVRNRGTAFYAFAKDEETRRKQMEELMSAREETQREREARQA  327
            +RDRS TPP   HYDAD E+R +G  FYAF+KDEE R+KQMEEL   REET+ +R+ R+ 
Sbjct  8    KRDRSATPPGPIHYDADKEIRTKGVGFYAFSKDEEERKKQMEELEELREETEEQRKEREE  67

Query  328  RRVERQRVKEERRRQIEEL  346
             + +R+   EERR++I E 
Sbjct  68   LKEKRKAELEERRKKIRER  86



Lambda      K        H        a         alpha
   0.310    0.124    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00027267

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463837 pfam13300, DUF4078, Domain of unknown function (DUF407...  92.6    5e-24


>CDD:463837 pfam13300, DUF4078, Domain of unknown function (DUF4078).  This 
family is found from fungi to humans, but its exact function 
is not known.
Length=86

 Score = 92.6 bits (231),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 43/79 (54%), Positives = 57/79 (72%), Gaps = 0/79 (0%)

Query  268  RRDRSPTPPEETHYDADAEVRNRGTAFYAFAKDEETRRKQMEELMSAREETQREREARQA  327
            +RDRS TPP   HYDAD E+R +G  FYAF+KDEE R+KQMEEL   REET+ +R+ R+ 
Sbjct  8    KRDRSATPPGPIHYDADKEIRTKGVGFYAFSKDEEERKKQMEELEELREETEEQRKEREE  67

Query  328  RRVERQRVKEERRRQIEEL  346
             + +R+   EERR++I E 
Sbjct  68   LKEKRKAELEERRKKIRER  86



Lambda      K        H        a         alpha
   0.310    0.124    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00022668

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459921 pfam00742, Homoserine_dh, Homoserine dehydrogenase         208     2e-67


>CDD:459921 pfam00742, Homoserine_dh, Homoserine dehydrogenase.  
Length=178

 Score = 208 bits (533),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 78/211 (37%), Positives = 107/211 (51%), Gaps = 36/211 (17%)

Query  153  PVISTLRDLVATGDEVTRIEGVFSGTLSFLFNTFAPVSGASNAKWSEVVAQAKELGYTEP  212
            P+I TLR L   GD +TRIEG+ +GT +++              +SE + +A+ELGY E 
Sbjct  1    PIIRTLR-LSLAGDRITRIEGILNGTTNYILTRME----EEGLSFSEALKEAQELGYAEA  55

Query  213  DPRDDLNGMDVARKLTILARIA-GLEVQGPDSFPIESLIPAELASLPSTADGISQFMTKL  271
            DP DD+ G+D ARKL ILAR+A GL+V+  +   +E +                   T+L
Sbjct  56   DPTDDVEGIDAARKLAILARLAFGLDVE-LEDVEVEGI-------------------TRL  95

Query  272  PSFDSQMAAIKEGAEKQGKVVRYVGSVDVA--KKEVRVGLQQFDKDSAIAGLKGSDNIIS  329
             + D     I   A++ GKV++ V S        E RVG     KD  +A +KG DN + 
Sbjct  96   TAED-----IAY-AKELGKVIKLVASAKRDDGGVEARVGPTLVPKDHPLASVKGVDNAVV  149

Query  330  FYTKRYGSNPLIVQGAGAGGEVTAMGVTADL  360
              T RYG   L+  G GAG   TA  V ADL
Sbjct  150  IETDRYG--ELVFYGPGAGALPTASAVLADL  178



Lambda      K        H        a         alpha
   0.314    0.132    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00022669

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459921 pfam00742, Homoserine_dh, Homoserine dehydrogenase         208     2e-67


>CDD:459921 pfam00742, Homoserine_dh, Homoserine dehydrogenase.  
Length=178

 Score = 208 bits (533),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 78/211 (37%), Positives = 107/211 (51%), Gaps = 36/211 (17%)

Query  153  PVISTLRDLVATGDEVTRIEGVFSGTLSFLFNTFAPVSGASNAKWSEVVAQAKELGYTEP  212
            P+I TLR L   GD +TRIEG+ +GT +++              +SE + +A+ELGY E 
Sbjct  1    PIIRTLR-LSLAGDRITRIEGILNGTTNYILTRME----EEGLSFSEALKEAQELGYAEA  55

Query  213  DPRDDLNGMDVARKLTILARIA-GLEVQGPDSFPIESLIPAELASLPSTADGISQFMTKL  271
            DP DD+ G+D ARKL ILAR+A GL+V+  +   +E +                   T+L
Sbjct  56   DPTDDVEGIDAARKLAILARLAFGLDVE-LEDVEVEGI-------------------TRL  95

Query  272  PSFDSQMAAIKEGAEKQGKVVRYVGSVDVA--KKEVRVGLQQFDKDSAIAGLKGSDNIIS  329
             + D     I   A++ GKV++ V S        E RVG     KD  +A +KG DN + 
Sbjct  96   TAED-----IAY-AKELGKVIKLVASAKRDDGGVEARVGPTLVPKDHPLASVKGVDNAVV  149

Query  330  FYTKRYGSNPLIVQGAGAGGEVTAMGVTADL  360
              T RYG   L+  G GAG   TA  V ADL
Sbjct  150  IETDRYG--ELVFYGPGAGALPTASAVLADL  178



Lambda      K        H        a         alpha
   0.314    0.132    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00022670

Length=731
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM re...  298     1e-96
CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative...  144     1e-40


>CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM region, putative 
phosphate.  RSN1_7TM is the seven transmembrane domain 
region of putative phosphate transporter. The family is the 
7TM region of osmosensitive calcium-permeable cation channels.
Length=273

 Score = 298 bits (766),  Expect = 1e-96, Method: Composition-based stats.
 Identities = 99/286 (35%), Positives = 151/286 (53%), Gaps = 15/286 (5%)

Query  159  KRFMNFIWTTLLTVVWIAPNAMIAIFLSNLSNLGLVWPAFQTSLNANPEVWAAVQGILSP  218
            +R +  +   LL + W  P A +   LSNL  L  VWP  +  L   P++   V G+L P
Sbjct  1    RRLIVNLAIFLLIIFWAIPVAFVG-LLSNLETLTKVWPFLKWILELPPKLLGLVTGLLPP  59

Query  219  AITSLVYLLLPIIFRRLSIKAGDVTKTSRERHVLSHLYSFFVFNNLIVFSLFSAAWTFVA  278
             + SL+  LLPII R LS   G  +++  E  V S  ++F V N  +VF+L S+A + + 
Sbjct  60   LLLSLLMALLPIILRFLSKLQGAPSRSDIELSVQSKYFAFLVVNVFLVFTLASSASSLIE  119

Query  279  AVVDAKNHDEDAWQAIKDGAFYQKVMSALCQVSPFWVTWLLQRNL-GAAIDLVQLVTLFW  337
             ++D               +    + + L + S F++T++L + L GAA +L+QL  L  
Sbjct  120  QIID------------NPTSIPTLLATNLPKASNFFITYILLQGLSGAAGELLQLGPLIL  167

Query  338  VWFSKTFLAPTPRQAIE-WTAPPPFDYASYYNYFLFYSTVALCFATLQPIVLPVTALYFG  396
             +  + FL  TPR   E +T PP FDY + Y  FL   T+ L ++ + P++LP   +YFG
Sbjct  168  FYIKRKFLDKTPRDKYERYTTPPSFDYGTVYPVFLLIFTIGLIYSVIAPLILPFGLVYFG  227

Query  397  LDAMLKKYLLLYVFVTKTESGGQFWRALFNRLVFATILSNVVIALV  442
            L   + KY LLYV+VTK ESGG+FW    NRL+    L  + +  +
Sbjct  228  LGYFVYKYQLLYVYVTKYESGGRFWPRALNRLLVGLYLFQLCLIGL  273


>CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative phosphate 
transporter.  PHM7_cyt is the predicted cytosolic domain 
of integral membrane proteins, such as yeast PHM7 and TM63A_HUMAN 
TRANSMEMBRANE PROTEIN 63A. This domain usually precedes 
the 7TM region, pfam02714, and follows a RSN1_TM, pfam13967. 
Fold recognition programs consistently and with high significance 
predict this domain to be distantly homologous to 
RNA binding proteins from the RRM clan.
Length=164

 Score = 144 bits (366),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 60/149 (40%), Positives = 84/149 (56%), Gaps = 7/149 (5%)

Query  2    RLVDDFNPTAALPRASIGRNVKDLPVLIKEHEETVRQLESVLAKYLKRPDQLPAKRPMMR  61
               ++  P   + R  I R+VK LP L++E E+ VR+LE+ LAKYLK   + P KRP  +
Sbjct  21   SFFEELYPGTVVERVQIVRDVKKLPKLVEEREKAVRKLEAALAKYLKNGKK-PKKRPTHK  79

Query  62   PSKKQRGNHPDCKVDAIDYLTDRIQRLEEEIRHVRASIDKRNAMPFGFVSWDLIEHAHAV  121
                        KVDAIDY T++++ LEEEI   R  +DK+  +   FV++     A A 
Sbjct  80   LGFLGLFGK---KVDAIDYYTEKLEELEEEIEEEREKVDKK-PLGAAFVTFKSERSAAAA  135

Query  122  AYTA--RKKHPKGTTIQLAPRPNDLIWEN  148
            A     +  HPKG T++LAP P D+IWEN
Sbjct  136  AAQINPQLMHPKGWTVELAPEPRDVIWEN  164



Lambda      K        H        a         alpha
   0.322    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 926931824


Query= TCONS_00027268

Length=649
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      122     2e-31


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 122 bits (309),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 77/410 (19%), Positives = 131/410 (32%), Gaps = 148/410 (36%)

Query  47   VGLSNPANDCFINSVLQALAGLGDLRVYLIRELHRRELDGPDVYNSLPEANETPRGMTPE  106
             GL N  N C++NSVLQ+L  +   R YL+R     E    +   +L  A          
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCA----------  50

Query  107  RIRELQQGTITRALKEMLDRLNERPIYKKTITNRAFIQALEYAFRTRISRNQQDAQEFLQ  166
                     +    K +        +       + F ++L           QQDAQEFL 
Sbjct  51   ---------LRDLFKALQKNSKSSSVSP-----KMFKKSLGKLNPDFSGYKQQDAQEFLL  96

Query  167  IVAERLCDEYHAGLKARQRAQGLPATLPGSGGEESVQSSAVEKGSAEIEVRIDDGTEMGL  226
             + + L                           E +  +   +  + I   +        
Sbjct  97   FLLDGL--------------------------HEDLNGNHSTENESLI-TDL--------  121

Query  227  PAIIDNKLKEIDNAYGFPFEGQMESQIECQFCHYQYKPNKTSFVNLTLQVPQKSSTT---  283
                              F GQ++S+++C  C    +     F +L+L +P  S+     
Sbjct  122  ------------------FRGQLKSRLKCLSCGEVSET-FEPFSDLSLPIPGDSAELKTA  162

Query  284  -LSSCFDGLLKTE---YIDDFRCDRCRLQHALDAKMVELSRSHSTRDRERLEQEIQLTRH  339
             L  CF    K E     + + CD+C                                  
Sbjct  163  SLQICFLQFSKLEELDDEEKYYCDKCG-------------------------------CK  191

Query  340  AIATDPENPPEGVSLPPSDLAPKRKIARHMRITIFPKIIAIHLSRSIFDRSSSTKNAAKV  399
              A                        + ++I+  P ++ IHL R  ++RS+  K   +V
Sbjct  192  QDAI-----------------------KQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEV  228

Query  400  SFPERLPLGGILSQ---------KWFKLLAIVCHKGSHNSGHYESFRRNN  440
             FP  L L   L++         + ++L+A+V H GS +SGHY ++ +  
Sbjct  229  EFPLELDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAY  278



Lambda      K        H        a         alpha
   0.313    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0632    0.140     1.90     42.6     43.6 

Effective search space used: 819983240


Query= TCONS_00022671

Length=649
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      122     2e-31


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 122 bits (309),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 77/410 (19%), Positives = 131/410 (32%), Gaps = 148/410 (36%)

Query  47   VGLSNPANDCFINSVLQALAGLGDLRVYLIRELHRRELDGPDVYNSLPEANETPRGMTPE  106
             GL N  N C++NSVLQ+L  +   R YL+R     E    +   +L  A          
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCA----------  50

Query  107  RIRELQQGTITRALKEMLDRLNERPIYKKTITNRAFIQALEYAFRTRISRNQQDAQEFLQ  166
                     +    K +        +       + F ++L           QQDAQEFL 
Sbjct  51   ---------LRDLFKALQKNSKSSSVSP-----KMFKKSLGKLNPDFSGYKQQDAQEFLL  96

Query  167  IVAERLCDEYHAGLKARQRAQGLPATLPGSGGEESVQSSAVEKGSAEIEVRIDDGTEMGL  226
             + + L                           E +  +   +  + I   +        
Sbjct  97   FLLDGL--------------------------HEDLNGNHSTENESLI-TDL--------  121

Query  227  PAIIDNKLKEIDNAYGFPFEGQMESQIECQFCHYQYKPNKTSFVNLTLQVPQKSSTT---  283
                              F GQ++S+++C  C    +     F +L+L +P  S+     
Sbjct  122  ------------------FRGQLKSRLKCLSCGEVSET-FEPFSDLSLPIPGDSAELKTA  162

Query  284  -LSSCFDGLLKTE---YIDDFRCDRCRLQHALDAKMVELSRSHSTRDRERLEQEIQLTRH  339
             L  CF    K E     + + CD+C                                  
Sbjct  163  SLQICFLQFSKLEELDDEEKYYCDKCG-------------------------------CK  191

Query  340  AIATDPENPPEGVSLPPSDLAPKRKIARHMRITIFPKIIAIHLSRSIFDRSSSTKNAAKV  399
              A                        + ++I+  P ++ IHL R  ++RS+  K   +V
Sbjct  192  QDAI-----------------------KQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEV  228

Query  400  SFPERLPLGGILSQ---------KWFKLLAIVCHKGSHNSGHYESFRRNN  440
             FP  L L   L++         + ++L+A+V H GS +SGHY ++ +  
Sbjct  229  EFPLELDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAY  278



Lambda      K        H        a         alpha
   0.313    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 819983240


Query= TCONS_00027269

Length=418


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00022672

Length=905


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1162766340


Query= TCONS_00022673

Length=687


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 876025260


Query= TCONS_00022674

Length=905


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1162766340


Query= TCONS_00022675

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            112     9e-28


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 112 bits (281),  Expect = 9e-28, Method: Composition-based stats.
 Identities = 82/375 (22%), Positives = 133/375 (35%), Gaps = 35/375 (9%)

Query  94   CAFLTPISSTAILTAVPE-LATTFETTGDMINASNALYLASMAVSCLFWGPLSQVWGRRP  152
             AFL  +  + +  A+P  LA     +   I     L+    A++    G LS  +GRR 
Sbjct  4    AAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRR  63

Query  153  IFIVSGLLFWLSTTATALSPNLAAYFIFRVLTALQGTSFLVVGSSAIGDIYEPRARATAL  212
            + ++  LLF L       + +L    + RVL  L   +      + I D + P  R  AL
Sbjct  64   VLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRAL  123

Query  213  AWFLSGSMTGPALGPFLGGIVVTFRHWRVIFWLLTALTGFAVLLIIIFLPETIPYKSKAE  272
                +G   G ALGP LGG++ +   WR  F +L  L+  A +L+++  P     +SK  
Sbjct  124  GLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPP---ESKRP  180

Query  273  LAGHSHPKRIKMLWQRISPLRALLLPFSHPNIFITGLAAGALVWNQYSLLTPIRYVLNPR  332
                     + + W+ +     L L        +  L      +       P   +    
Sbjct  181  KPAEEARLSLIVAWKALLRDPVLWL--------LLALLLFGFAFFGLLTYLP---LYQEV  229

Query  333  FHLSSPIRAGLFYLAPGCGYLAGTFVGGRWADYTVKKYIKKRNGQRVSEDRLRSCLPYIC  392
              L S + AGL     G     G  + GR +D             R+   R       + 
Sbjct  230  LGL-SALLAGLLLGLGGLLGAIGRLLLGRLSD-------------RLGRRRRLLLALLLL  275

Query  393  IVTPGCLLVYGWTLDREVGGIAVPVVAMFLQGVAQMFCFPSLQSYCLDVMQPHGRSAEVV  452
            I+    LL+   TL          ++A+ L G      FP+L +   D+  P        
Sbjct  276  ILAALGLLLLSLTL-----SSLWLLLALLLLGFGFGLVFPALNALVSDLA-PKEERGTAS  329

Query  453  ASSYVFRYVFAAIGT  467
                    +  A+G 
Sbjct  330  GLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 663160908


Query= TCONS_00022676

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00022677

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            112     9e-28


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 112 bits (281),  Expect = 9e-28, Method: Composition-based stats.
 Identities = 82/375 (22%), Positives = 133/375 (35%), Gaps = 35/375 (9%)

Query  94   CAFLTPISSTAILTAVPE-LATTFETTGDMINASNALYLASMAVSCLFWGPLSQVWGRRP  152
             AFL  +  + +  A+P  LA     +   I     L+    A++    G LS  +GRR 
Sbjct  4    AAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRR  63

Query  153  IFIVSGLLFWLSTTATALSPNLAAYFIFRVLTALQGTSFLVVGSSAIGDIYEPRARATAL  212
            + ++  LLF L       + +L    + RVL  L   +      + I D + P  R  AL
Sbjct  64   VLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRAL  123

Query  213  AWFLSGSMTGPALGPFLGGIVVTFRHWRVIFWLLTALTGFAVLLIIIFLPETIPYKSKAE  272
                +G   G ALGP LGG++ +   WR  F +L  L+  A +L+++  P     +SK  
Sbjct  124  GLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPP---ESKRP  180

Query  273  LAGHSHPKRIKMLWQRISPLRALLLPFSHPNIFITGLAAGALVWNQYSLLTPIRYVLNPR  332
                     + + W+ +     L L        +  L      +       P   +    
Sbjct  181  KPAEEARLSLIVAWKALLRDPVLWL--------LLALLLFGFAFFGLLTYLP---LYQEV  229

Query  333  FHLSSPIRAGLFYLAPGCGYLAGTFVGGRWADYTVKKYIKKRNGQRVSEDRLRSCLPYIC  392
              L S + AGL     G     G  + GR +D             R+   R       + 
Sbjct  230  LGL-SALLAGLLLGLGGLLGAIGRLLLGRLSD-------------RLGRRRRLLLALLLL  275

Query  393  IVTPGCLLVYGWTLDREVGGIAVPVVAMFLQGVAQMFCFPSLQSYCLDVMQPHGRSAEVV  452
            I+    LL+   TL          ++A+ L G      FP+L +   D+  P        
Sbjct  276  ILAALGLLLLSLTL-----SSLWLLLALLLLGFGFGLVFPALNALVSDLA-PKEERGTAS  329

Query  453  ASSYVFRYVFAAIGT  467
                    +  A+G 
Sbjct  330  GLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 663160908


Query= TCONS_00022678

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.147    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00022679

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            57.8    4e-11


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 57.8 bits (140),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 33/120 (28%), Positives = 53/120 (44%), Gaps = 0/120 (0%)

Query  28   IFIVSGLLFWLSTTATALSPNLAAYFIFRVLTALQGTSFLVVGSSAIGDIYEPRARATAL  87
            + ++  LLF L       + +L    + RVL  L   +      + I D + P  R  AL
Sbjct  64   VLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRAL  123

Query  88   AWFLSGSMTGPALGPFLGGIVVTFRHWRVIFWLLTALTGFAVLLIIIFLPETIPYKSKAE  147
                +G   G ALGP LGG++ +   WR  F +L  L+  A +L+++  P     + K  
Sbjct  124  GLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPA  183



Lambda      K        H        a         alpha
   0.327    0.137    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00027270

Length=761
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  264     7e-83
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  59.8    9e-12


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 264 bits (677),  Expect = 7e-83, Method: Composition-based stats.
 Identities = 113/326 (35%), Positives = 178/326 (55%), Gaps = 12/326 (4%)

Query  19   LRKKAGQLFAVGFHGVVPSPEIKTLIHEYGIGGIVLFKRNIQNAMQLQSLTLALQEEARL  78
            L +K GQL  V      PS E   L+ +Y +GGI+LF  N+++ +QL  L    ++    
Sbjct  2    LDEKIGQLLQVEVGEGKPSHEEAELLKDYHVGGIILFGGNLEDWVQLSDLIRYQRQAVEE  61

Query  79   AGHEYPLFIGIDQENGLVTRISPPIAAQLPGPMALGATHSPELAYQVGQVTGETLRFFGI  138
            +    PL + +DQE G V R         P  +AL AT  P+LA Q+G      +R  GI
Sbjct  62   SRLGIPLLVAVDQEGGRVQRFGE--GTMFPSAIALAATSDPDLAKQMGWAMAREMRALGI  119

Query  139  NMNYAPVCDINSEPLNPVIGPRSPGDDPEFVGRFASAAAQGLREQKIIPSVKHFPGHGDT  198
            + ++APV D+  +P    IG RS  +DP+ V   A A  +GL+   ++ +VKHFPGHG  
Sbjct  120  DWDFAPVVDVARDPRWG-IGERSFSEDPQLVSALAGAMIEGLQGAGVLATVKHFPGHGHG  178

Query  199  AVDSHYGLPVIEKTREQLERCELIPFRRAVAEGVEAVMTAHISLPAIGDGKLPATLSADV  258
            A DSH   P   +  ++L   +L+PF+ A+  GV+AVM AH+   ++ DG  PAT S  +
Sbjct  179  ATDSHKETPTTPRPEQRLRTVDLLPFQAAIEAGVDAVMAAHVIYSSL-DGT-PATGSKYL  236

Query  259  LS-ILRNEMQFEGMIITDCLEMDGIRATYGTEQGAVLSLEAGSDSIMICHTYAVQVASIQ  317
            L+ +LR +  F+G++++D L M GI    G  +    +LEAG D  ++           +
Sbjct  237  LTDVLRKKWGFDGIVVSDDLSMKGIADHGGPAEAVRRALEAGVDIALVPEERT------K  290

Query  318  KVCEAVQSGQLSASRLEEAYRRVVKL  343
             + + V++G+L  +R++ A RRV++L
Sbjct  291  YLKKVVKNGKLPMARIDAAVRRVLRL  316


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 59.8 bits (145),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query  592  NGHHFVARLESKIIGFCVMYMTTNRGTTCCQLAVLAVHPSYQRQGVGTALIAEARTWL  649
             G  FVA  + KI+GF  +    + G        LAVHP Y+ QG+G AL+  A    
Sbjct  2    GGRFFVAEDDGKIVGFAALLPLDDEGALAELR--LAVHPEYRGQGIGRALLEAAEAAA  57



Lambda      K        H        a         alpha
   0.320    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 970586384


Query= TCONS_00027271

Length=761
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  264     7e-83
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  59.8    9e-12


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 264 bits (677),  Expect = 7e-83, Method: Composition-based stats.
 Identities = 113/326 (35%), Positives = 178/326 (55%), Gaps = 12/326 (4%)

Query  19   LRKKAGQLFAVGFHGVVPSPEIKTLIHEYGIGGIVLFKRNIQNAMQLQSLTLALQEEARL  78
            L +K GQL  V      PS E   L+ +Y +GGI+LF  N+++ +QL  L    ++    
Sbjct  2    LDEKIGQLLQVEVGEGKPSHEEAELLKDYHVGGIILFGGNLEDWVQLSDLIRYQRQAVEE  61

Query  79   AGHEYPLFIGIDQENGLVTRISPPIAAQLPGPMALGATHSPELAYQVGQVTGETLRFFGI  138
            +    PL + +DQE G V R         P  +AL AT  P+LA Q+G      +R  GI
Sbjct  62   SRLGIPLLVAVDQEGGRVQRFGE--GTMFPSAIALAATSDPDLAKQMGWAMAREMRALGI  119

Query  139  NMNYAPVCDINSEPLNPVIGPRSPGDDPEFVGRFASAAAQGLREQKIIPSVKHFPGHGDT  198
            + ++APV D+  +P    IG RS  +DP+ V   A A  +GL+   ++ +VKHFPGHG  
Sbjct  120  DWDFAPVVDVARDPRWG-IGERSFSEDPQLVSALAGAMIEGLQGAGVLATVKHFPGHGHG  178

Query  199  AVDSHYGLPVIEKTREQLERCELIPFRRAVAEGVEAVMTAHISLPAIGDGKLPATLSADV  258
            A DSH   P   +  ++L   +L+PF+ A+  GV+AVM AH+   ++ DG  PAT S  +
Sbjct  179  ATDSHKETPTTPRPEQRLRTVDLLPFQAAIEAGVDAVMAAHVIYSSL-DGT-PATGSKYL  236

Query  259  LS-ILRNEMQFEGMIITDCLEMDGIRATYGTEQGAVLSLEAGSDSIMICHTYAVQVASIQ  317
            L+ +LR +  F+G++++D L M GI    G  +    +LEAG D  ++           +
Sbjct  237  LTDVLRKKWGFDGIVVSDDLSMKGIADHGGPAEAVRRALEAGVDIALVPEERT------K  290

Query  318  KVCEAVQSGQLSASRLEEAYRRVVKL  343
             + + V++G+L  +R++ A RRV++L
Sbjct  291  YLKKVVKNGKLPMARIDAAVRRVLRL  316


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 59.8 bits (145),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query  592  NGHHFVARLESKIIGFCVMYMTTNRGTTCCQLAVLAVHPSYQRQGVGTALIAEARTWL  649
             G  FVA  + KI+GF  +    + G        LAVHP Y+ QG+G AL+  A    
Sbjct  2    GGRFFVAEDDGKIVGFAALLPLDDEGALAELR--LAVHPEYRGQGIGRALLEAAEAAA  57



Lambda      K        H        a         alpha
   0.320    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 970586384


Query= TCONS_00027272

Length=708
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  231     2e-70
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  59.8    9e-12


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 231 bits (590),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 104/324 (32%), Positives = 164/324 (51%), Gaps = 48/324 (15%)

Query  6    LRKKAGQLFAVGFHGVVPSPEIKTLIHEYGIGGIVLFKRNIQNAMQLQ------------  53
            L +K GQL  V      PS E   L+ +Y +GGI+LF  N+++ +QL             
Sbjct  2    LDEKIGQLLQVEVGEGKPSHEEAELLKDYHVGGIILFGGNLEDWVQLSDLIRYQRQAVEE  61

Query  54   --------------------------LPGPMALGATHSPELAYQVGQVTGETLRFFGINM  87
                                       P  +AL AT  P+LA Q+G      +R  GI+ 
Sbjct  62   SRLGIPLLVAVDQEGGRVQRFGEGTMFPSAIALAATSDPDLAKQMGWAMAREMRALGIDW  121

Query  88   NYAPVCDINSEPLNPVIGPRSPGDDPEFVGRFASAAAQGLREQKIIPSVKHFPGHGDTAV  147
            ++APV D+  +P    IG RS  +DP+ V   A A  +GL+   ++ +VKHFPGHG  A 
Sbjct  122  DFAPVVDVARDPRWG-IGERSFSEDPQLVSALAGAMIEGLQGAGVLATVKHFPGHGHGAT  180

Query  148  DSHYGLPVIEKTREQLERCELIPFRRAVAEGVEAVMTAHISLPAIGDGKLPATLSADVLS  207
            DSH   P   +  ++L   +L+PF+ A+  GV+AVM AH+   ++ DG  PAT S  +L+
Sbjct  181  DSHKETPTTPRPEQRLRTVDLLPFQAAIEAGVDAVMAAHVIYSSL-DGT-PATGSKYLLT  238

Query  208  -ILRNEMQFEGMIITDCLEMDGIRATYGTEQGAVLSLEAGSDSIMICHTYAVQVASIQKV  266
             +LR +  F+G++++D L M GI    G  +    +LEAG D  ++           + +
Sbjct  239  DVLRKKWGFDGIVVSDDLSMKGIADHGGPAEAVRRALEAGVDIALVPEERT------KYL  292

Query  267  CEAVQSGQLSASRLEEAYRRVVKL  290
             + V++G+L  +R++ A RRV++L
Sbjct  293  KKVVKNGKLPMARIDAAVRRVLRL  316


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 59.8 bits (145),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query  539  NGHHFVARLESKIIGFCVMYMTTNRGTTCCQLAVLAVHPSYQRQGVGTALIAEARTWL  596
             G  FVA  + KI+GF  +    + G        LAVHP Y+ QG+G AL+  A    
Sbjct  2    GGRFFVAEDDGKIVGFAALLPLDDEGALAELR--LAVHPEYRGQGIGRALLEAAEAAA  57



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906995850


Query= TCONS_00022680

Length=867
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  264     6e-82
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  59.4    1e-11


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 264 bits (677),  Expect = 6e-82, Method: Composition-based stats.
 Identities = 113/326 (35%), Positives = 178/326 (55%), Gaps = 12/326 (4%)

Query  19   LRKKAGQLFAVGFHGVVPSPEIKTLIHEYGIGGIVLFKRNIQNAMQLQSLTLALQEEARL  78
            L +K GQL  V      PS E   L+ +Y +GGI+LF  N+++ +QL  L    ++    
Sbjct  2    LDEKIGQLLQVEVGEGKPSHEEAELLKDYHVGGIILFGGNLEDWVQLSDLIRYQRQAVEE  61

Query  79   AGHEYPLFIGIDQENGLVTRISPPIAAQLPGPMALGATHSPELAYQVGQVTGETLRFFGI  138
            +    PL + +DQE G V R         P  +AL AT  P+LA Q+G      +R  GI
Sbjct  62   SRLGIPLLVAVDQEGGRVQRFGE--GTMFPSAIALAATSDPDLAKQMGWAMAREMRALGI  119

Query  139  NMNYAPVCDINSEPLNPVIGPRSPGDDPEFVGRFASAAAQGLREQKIIPSVKHFPGHGDT  198
            + ++APV D+  +P    IG RS  +DP+ V   A A  +GL+   ++ +VKHFPGHG  
Sbjct  120  DWDFAPVVDVARDPRWG-IGERSFSEDPQLVSALAGAMIEGLQGAGVLATVKHFPGHGHG  178

Query  199  AVDSHYGLPVIEKTREQLERCELIPFRRAVAEGVEAVMTAHISLPAIGDGKLPATLSADV  258
            A DSH   P   +  ++L   +L+PF+ A+  GV+AVM AH+   ++ DG  PAT S  +
Sbjct  179  ATDSHKETPTTPRPEQRLRTVDLLPFQAAIEAGVDAVMAAHVIYSSL-DGT-PATGSKYL  236

Query  259  LS-ILRNEMQFEGMIITDCLEMDGIRATYGTEQGAVLSLEAGSDSIMICHTYAVQVASIQ  317
            L+ +LR +  F+G++++D L M GI    G  +    +LEAG D  ++           +
Sbjct  237  LTDVLRKKWGFDGIVVSDDLSMKGIADHGGPAEAVRRALEAGVDIALVPEERT------K  290

Query  318  KVCEAVQSGQLSASRLEEAYRRVVKL  343
             + + V++G+L  +R++ A RRV++L
Sbjct  291  YLKKVVKNGKLPMARIDAAVRRVLRL  316


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 59.4 bits (144),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query  592  NGHHFVARLESKIIGFCVMYMTTNRGTTCCQLAVLAVHPSYQRQGVGTALIAEARTWL  649
             G  FVA  + KI+GF  +    + G        LAVHP Y+ QG+G AL+  A    
Sbjct  2    GGRFFVAEDDGKIVGFAALLPLDDEGALAELR--LAVHPEYRGQGIGRALLEAAEAAA  57



Lambda      K        H        a         alpha
   0.320    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1108216808


Query= TCONS_00027273

Length=721
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  231     2e-70
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  59.8    8e-12


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 231 bits (590),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 104/324 (32%), Positives = 164/324 (51%), Gaps = 48/324 (15%)

Query  19   LRKKAGQLFAVGFHGVVPSPEIKTLIHEYGIGGIVLFKRNIQNAMQLQ------------  66
            L +K GQL  V      PS E   L+ +Y +GGI+LF  N+++ +QL             
Sbjct  2    LDEKIGQLLQVEVGEGKPSHEEAELLKDYHVGGIILFGGNLEDWVQLSDLIRYQRQAVEE  61

Query  67   --------------------------LPGPMALGATHSPELAYQVGQVTGETLRFFGINM  100
                                       P  +AL AT  P+LA Q+G      +R  GI+ 
Sbjct  62   SRLGIPLLVAVDQEGGRVQRFGEGTMFPSAIALAATSDPDLAKQMGWAMAREMRALGIDW  121

Query  101  NYAPVCDINSEPLNPVIGPRSPGDDPEFVGRFASAAAQGLREQKIIPSVKHFPGHGDTAV  160
            ++APV D+  +P    IG RS  +DP+ V   A A  +GL+   ++ +VKHFPGHG  A 
Sbjct  122  DFAPVVDVARDPRWG-IGERSFSEDPQLVSALAGAMIEGLQGAGVLATVKHFPGHGHGAT  180

Query  161  DSHYGLPVIEKTREQLERCELIPFRRAVAEGVEAVMTAHISLPAIGDGKLPATLSADVLS  220
            DSH   P   +  ++L   +L+PF+ A+  GV+AVM AH+   ++ DG  PAT S  +L+
Sbjct  181  DSHKETPTTPRPEQRLRTVDLLPFQAAIEAGVDAVMAAHVIYSSL-DGT-PATGSKYLLT  238

Query  221  -ILRNEMQFEGMIITDCLEMDGIRATYGTEQGAVLSLEAGSDSIMICHTYAVQVASIQKV  279
             +LR +  F+G++++D L M GI    G  +    +LEAG D  ++           + +
Sbjct  239  DVLRKKWGFDGIVVSDDLSMKGIADHGGPAEAVRRALEAGVDIALVPEERT------KYL  292

Query  280  CEAVQSGQLSASRLEEAYRRVVKL  303
             + V++G+L  +R++ A RRV++L
Sbjct  293  KKVVKNGKLPMARIDAAVRRVLRL  316


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 59.8 bits (145),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query  552  NGHHFVARLESKIIGFCVMYMTTNRGTTCCQLAVLAVHPSYQRQGVGTALIAEARTWL  609
             G  FVA  + KI+GF  +    + G        LAVHP Y+ QG+G AL+  A    
Sbjct  2    GGRFFVAEDDGKIVGFAALLPLDDEGALAELR--LAVHPEYRGQGIGRALLEAAEAAA  57



Lambda      K        H        a         alpha
   0.320    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 912380304


Query= TCONS_00022681

Length=748
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  264     6e-83
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  59.4    1e-11


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 264 bits (677),  Expect = 6e-83, Method: Composition-based stats.
 Identities = 113/326 (35%), Positives = 178/326 (55%), Gaps = 12/326 (4%)

Query  6    LRKKAGQLFAVGFHGVVPSPEIKTLIHEYGIGGIVLFKRNIQNAMQLQSLTLALQEEARL  65
            L +K GQL  V      PS E   L+ +Y +GGI+LF  N+++ +QL  L    ++    
Sbjct  2    LDEKIGQLLQVEVGEGKPSHEEAELLKDYHVGGIILFGGNLEDWVQLSDLIRYQRQAVEE  61

Query  66   AGHEYPLFIGIDQENGLVTRISPPIAAQLPGPMALGATHSPELAYQVGQVTGETLRFFGI  125
            +    PL + +DQE G V R         P  +AL AT  P+LA Q+G      +R  GI
Sbjct  62   SRLGIPLLVAVDQEGGRVQRFGE--GTMFPSAIALAATSDPDLAKQMGWAMAREMRALGI  119

Query  126  NMNYAPVCDINSEPLNPVIGPRSPGDDPEFVGRFASAAAQGLREQKIIPSVKHFPGHGDT  185
            + ++APV D+  +P    IG RS  +DP+ V   A A  +GL+   ++ +VKHFPGHG  
Sbjct  120  DWDFAPVVDVARDPRWG-IGERSFSEDPQLVSALAGAMIEGLQGAGVLATVKHFPGHGHG  178

Query  186  AVDSHYGLPVIEKTREQLERCELIPFRRAVAEGVEAVMTAHISLPAIGDGKLPATLSADV  245
            A DSH   P   +  ++L   +L+PF+ A+  GV+AVM AH+   ++ DG  PAT S  +
Sbjct  179  ATDSHKETPTTPRPEQRLRTVDLLPFQAAIEAGVDAVMAAHVIYSSL-DGT-PATGSKYL  236

Query  246  LS-ILRNEMQFEGMIITDCLEMDGIRATYGTEQGAVLSLEAGSDSIMICHTYAVQVASIQ  304
            L+ +LR +  F+G++++D L M GI    G  +    +LEAG D  ++           +
Sbjct  237  LTDVLRKKWGFDGIVVSDDLSMKGIADHGGPAEAVRRALEAGVDIALVPEERT------K  290

Query  305  KVCEAVQSGQLSASRLEEAYRRVVKL  330
             + + V++G+L  +R++ A RRV++L
Sbjct  291  YLKKVVKNGKLPMARIDAAVRRVLRL  316


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 59.4 bits (144),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query  579  NGHHFVARLESKIIGFCVMYMTTNRGTTCCQLAVLAVHPSYQRQGVGTALIAEARTWL  636
             G  FVA  + KI+GF  +    + G        LAVHP Y+ QG+G AL+  A    
Sbjct  2    GGRFFVAEDDGKIVGFAALLPLDDEGALAELR--LAVHPEYRGQGIGRALLEAAEAAA  57



Lambda      K        H        a         alpha
   0.319    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 951669408


Query= TCONS_00022682

Length=812
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  230     1e-69
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  59.8    1e-11


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 230 bits (589),  Expect = 1e-69, Method: Composition-based stats.
 Identities = 104/324 (32%), Positives = 164/324 (51%), Gaps = 48/324 (15%)

Query  19   LRKKAGQLFAVGFHGVVPSPEIKTLIHEYGIGGIVLFKRNIQNAMQLQ------------  66
            L +K GQL  V      PS E   L+ +Y +GGI+LF  N+++ +QL             
Sbjct  2    LDEKIGQLLQVEVGEGKPSHEEAELLKDYHVGGIILFGGNLEDWVQLSDLIRYQRQAVEE  61

Query  67   --------------------------LPGPMALGATHSPELAYQVGQVTGETLRFFGINM  100
                                       P  +AL AT  P+LA Q+G      +R  GI+ 
Sbjct  62   SRLGIPLLVAVDQEGGRVQRFGEGTMFPSAIALAATSDPDLAKQMGWAMAREMRALGIDW  121

Query  101  NYAPVCDINSEPLNPVIGPRSPGDDPEFVGRFASAAAQGLREQKIIPSVKHFPGHGDTAV  160
            ++APV D+  +P    IG RS  +DP+ V   A A  +GL+   ++ +VKHFPGHG  A 
Sbjct  122  DFAPVVDVARDPRWG-IGERSFSEDPQLVSALAGAMIEGLQGAGVLATVKHFPGHGHGAT  180

Query  161  DSHYGLPVIEKTREQLERCELIPFRRAVAEGVEAVMTAHISLPAIGDGKLPATLSADVLS  220
            DSH   P   +  ++L   +L+PF+ A+  GV+AVM AH+   ++ DG  PAT S  +L+
Sbjct  181  DSHKETPTTPRPEQRLRTVDLLPFQAAIEAGVDAVMAAHVIYSSL-DGT-PATGSKYLLT  238

Query  221  -ILRNEMQFEGMIITDCLEMDGIRATYGTEQGAVLSLEAGSDSIMICHTYAVQVASIQKV  279
             +LR +  F+G++++D L M GI    G  +    +LEAG D  ++           + +
Sbjct  239  DVLRKKWGFDGIVVSDDLSMKGIADHGGPAEAVRRALEAGVDIALVPEERT------KYL  292

Query  280  CEAVQSGQLSASRLEEAYRRVVKL  303
             + V++G+L  +R++ A RRV++L
Sbjct  293  KKVVKNGKLPMARIDAAVRRVLRL  316


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 59.8 bits (145),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query  552  NGHHFVARLESKIIGFCVMYMTTNRGTTCCQLAVLAVHPSYQRQGVGTALIAEARTWL  609
             G  FVA  + KI+GF  +    + G        LAVHP Y+ QG+G AL+  A    
Sbjct  2    GGRFFVAEDDGKIVGFAALLPLDDEGALAELR--LAVHPEYRGQGIGRALLEAAEAAA  57



Lambda      K        H        a         alpha
   0.319    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 1044799136


Query= TCONS_00022683

Length=854
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  264     5e-82
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  59.4    1e-11


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 264 bits (676),  Expect = 5e-82, Method: Composition-based stats.
 Identities = 113/326 (35%), Positives = 178/326 (55%), Gaps = 12/326 (4%)

Query  6    LRKKAGQLFAVGFHGVVPSPEIKTLIHEYGIGGIVLFKRNIQNAMQLQSLTLALQEEARL  65
            L +K GQL  V      PS E   L+ +Y +GGI+LF  N+++ +QL  L    ++    
Sbjct  2    LDEKIGQLLQVEVGEGKPSHEEAELLKDYHVGGIILFGGNLEDWVQLSDLIRYQRQAVEE  61

Query  66   AGHEYPLFIGIDQENGLVTRISPPIAAQLPGPMALGATHSPELAYQVGQVTGETLRFFGI  125
            +    PL + +DQE G V R         P  +AL AT  P+LA Q+G      +R  GI
Sbjct  62   SRLGIPLLVAVDQEGGRVQRFGE--GTMFPSAIALAATSDPDLAKQMGWAMAREMRALGI  119

Query  126  NMNYAPVCDINSEPLNPVIGPRSPGDDPEFVGRFASAAAQGLREQKIIPSVKHFPGHGDT  185
            + ++APV D+  +P    IG RS  +DP+ V   A A  +GL+   ++ +VKHFPGHG  
Sbjct  120  DWDFAPVVDVARDPRWG-IGERSFSEDPQLVSALAGAMIEGLQGAGVLATVKHFPGHGHG  178

Query  186  AVDSHYGLPVIEKTREQLERCELIPFRRAVAEGVEAVMTAHISLPAIGDGKLPATLSADV  245
            A DSH   P   +  ++L   +L+PF+ A+  GV+AVM AH+   ++ DG  PAT S  +
Sbjct  179  ATDSHKETPTTPRPEQRLRTVDLLPFQAAIEAGVDAVMAAHVIYSSL-DGT-PATGSKYL  236

Query  246  LS-ILRNEMQFEGMIITDCLEMDGIRATYGTEQGAVLSLEAGSDSIMICHTYAVQVASIQ  304
            L+ +LR +  F+G++++D L M GI    G  +    +LEAG D  ++           +
Sbjct  237  LTDVLRKKWGFDGIVVSDDLSMKGIADHGGPAEAVRRALEAGVDIALVPEERT------K  290

Query  305  KVCEAVQSGQLSASRLEEAYRRVVKL  330
             + + V++G+L  +R++ A RRV++L
Sbjct  291  YLKKVVKNGKLPMARIDAAVRRVLRL  316


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 59.4 bits (144),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query  579  NGHHFVARLESKIIGFCVMYMTTNRGTTCCQLAVLAVHPSYQRQGVGTALIAEARTWL  636
             G  FVA  + KI+GF  +    + G        LAVHP Y+ QG+G AL+  A    
Sbjct  2    GGRFFVAEDDGKIVGFAALLPLDDEGALAELR--LAVHPEYRGQGIGRALLEAAEAAA  57



Lambda      K        H        a         alpha
   0.320    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1089555126


Query= TCONS_00022684

Length=814
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  230     1e-69
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  59.4    1e-11


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 230 bits (589),  Expect = 1e-69, Method: Composition-based stats.
 Identities = 104/324 (32%), Positives = 164/324 (51%), Gaps = 48/324 (15%)

Query  6    LRKKAGQLFAVGFHGVVPSPEIKTLIHEYGIGGIVLFKRNIQNAMQLQ------------  53
            L +K GQL  V      PS E   L+ +Y +GGI+LF  N+++ +QL             
Sbjct  2    LDEKIGQLLQVEVGEGKPSHEEAELLKDYHVGGIILFGGNLEDWVQLSDLIRYQRQAVEE  61

Query  54   --------------------------LPGPMALGATHSPELAYQVGQVTGETLRFFGINM  87
                                       P  +AL AT  P+LA Q+G      +R  GI+ 
Sbjct  62   SRLGIPLLVAVDQEGGRVQRFGEGTMFPSAIALAATSDPDLAKQMGWAMAREMRALGIDW  121

Query  88   NYAPVCDINSEPLNPVIGPRSPGDDPEFVGRFASAAAQGLREQKIIPSVKHFPGHGDTAV  147
            ++APV D+  +P    IG RS  +DP+ V   A A  +GL+   ++ +VKHFPGHG  A 
Sbjct  122  DFAPVVDVARDPRWG-IGERSFSEDPQLVSALAGAMIEGLQGAGVLATVKHFPGHGHGAT  180

Query  148  DSHYGLPVIEKTREQLERCELIPFRRAVAEGVEAVMTAHISLPAIGDGKLPATLSADVLS  207
            DSH   P   +  ++L   +L+PF+ A+  GV+AVM AH+   ++ DG  PAT S  +L+
Sbjct  181  DSHKETPTTPRPEQRLRTVDLLPFQAAIEAGVDAVMAAHVIYSSL-DGT-PATGSKYLLT  238

Query  208  -ILRNEMQFEGMIITDCLEMDGIRATYGTEQGAVLSLEAGSDSIMICHTYAVQVASIQKV  266
             +LR +  F+G++++D L M GI    G  +    +LEAG D  ++           + +
Sbjct  239  DVLRKKWGFDGIVVSDDLSMKGIADHGGPAEAVRRALEAGVDIALVPEERT------KYL  292

Query  267  CEAVQSGQLSASRLEEAYRRVVKL  290
             + V++G+L  +R++ A RRV++L
Sbjct  293  KKVVKNGKLPMARIDAAVRRVLRL  316


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 59.4 bits (144),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query  539  NGHHFVARLESKIIGFCVMYMTTNRGTTCCQLAVLAVHPSYQRQGVGTALIAEARTWL  596
             G  FVA  + KI+GF  +    + G        LAVHP Y+ QG+G AL+  A    
Sbjct  2    GGRFFVAEDDGKIVGFAALLPLDDEGALAELR--LAVHPEYRGQGIGRALLEAAEAAA  57



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1047709440


Query= TCONS_00022685

Length=854
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  264     7e-82
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  59.4    1e-11


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 264 bits (676),  Expect = 7e-82, Method: Composition-based stats.
 Identities = 113/326 (35%), Positives = 178/326 (55%), Gaps = 12/326 (4%)

Query  6    LRKKAGQLFAVGFHGVVPSPEIKTLIHEYGIGGIVLFKRNIQNAMQLQALTLALQEEARL  65
            L +K GQL  V      PS E   L+ +Y +GGI+LF  N+++ +QL  L    ++    
Sbjct  2    LDEKIGQLLQVEVGEGKPSHEEAELLKDYHVGGIILFGGNLEDWVQLSDLIRYQRQAVEE  61

Query  66   AGHEYPLFIGIDQENGLVTRISPPIAAQLPGPMALGATHSPELAYQVGQVTGETLRFFGI  125
            +    PL + +DQE G V R         P  +AL AT  P+LA Q+G      +R  GI
Sbjct  62   SRLGIPLLVAVDQEGGRVQRFGE--GTMFPSAIALAATSDPDLAKQMGWAMAREMRALGI  119

Query  126  NMNYAPVCDINSEPLNPVIGPRSPGDDPEFVGRFASAAAQGLREQKIIPSVKHFPGHGDT  185
            + ++APV D+  +P    IG RS  +DP+ V   A A  +GL+   ++ +VKHFPGHG  
Sbjct  120  DWDFAPVVDVARDPRWG-IGERSFSEDPQLVSALAGAMIEGLQGAGVLATVKHFPGHGHG  178

Query  186  AVDSHYGLPVIEKTREQLERCELIPFRRAVAEGVEAVMTAHISLPAIGDGKLPATLSADV  245
            A DSH   P   +  ++L   +L+PF+ A+  GV+AVM AH+   ++ DG  PAT S  +
Sbjct  179  ATDSHKETPTTPRPEQRLRTVDLLPFQAAIEAGVDAVMAAHVIYSSL-DGT-PATGSKYL  236

Query  246  LS-ILRNEMQFEGMIITDCLEMDGIRATYGTEQGAVLSLEAGSDSIMICHTYAVQVASIQ  304
            L+ +LR +  F+G++++D L M GI    G  +    +LEAG D  ++           +
Sbjct  237  LTDVLRKKWGFDGIVVSDDLSMKGIADHGGPAEAVRRALEAGVDIALVPEERT------K  290

Query  305  KVCEAVQSGQLSASRLEEAYRRVVKL  330
             + + V++G+L  +R++ A RRV++L
Sbjct  291  YLKKVVKNGKLPMARIDAAVRRVLRL  316


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 59.4 bits (144),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query  579  NGHHFVARLESKIIGFCVMYMTTNRGTTCCQLAVLAVHPSYQRQGVGTALIAEARTWL  636
             G  FVA  + KI+GF  +    + G        LAVHP Y+ QG+G AL+  A    
Sbjct  2    GGRFFVAEDDGKIVGFAALLPLDDEGALAELR--LAVHPEYRGQGIGRALLEAAEAAA  57



Lambda      K        H        a         alpha
   0.320    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1089555126


Query= TCONS_00027274

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  206     1e-61
CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  59.8    6e-12


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 206 bits (525),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 84/234 (36%), Positives = 135/234 (58%), Gaps = 10/234 (4%)

Query  1    MALGATHSPELAYQVGQVTGETLRFFGINMNYAPVCDINSEPLNPVIGPRSPGDDPEFVG  60
            +AL AT  P+LA Q+G      +R  GI+ ++APV D+  +P    IG RS  +DP+ V 
Sbjct  92   IALAATSDPDLAKQMGWAMAREMRALGIDWDFAPVVDVARDPRWG-IGERSFSEDPQLVS  150

Query  61   RFASAAAQGLREQKIIPSVKHFPGHGDTAVDSHYGLPVIEKTREQLERCELIPFRRAVAE  120
              A A  +GL+   ++ +VKHFPGHG  A DSH   P   +  ++L   +L+PF+ A+  
Sbjct  151  ALAGAMIEGLQGAGVLATVKHFPGHGHGATDSHKETPTTPRPEQRLRTVDLLPFQAAIEA  210

Query  121  GVEAVMTAHISLPAIGDGKLPATLSADVLS-ILRNEMQFEGMIITDCLEMDGIRATYGTE  179
            GV+AVM AH+   ++ DG  PAT S  +L+ +LR +  F+G++++D L M GI    G  
Sbjct  211  GVDAVMAAHVIYSSL-DGT-PATGSKYLLTDVLRKKWGFDGIVVSDDLSMKGIADHGGPA  268

Query  180  QGAVLSLEAGSDSIMICHTYAVQVASIQKVCEAVQSGQLSASRLEEAYRRVVKL  233
            +    +LEAG D  ++           + + + V++G+L  +R++ A RRV++L
Sbjct  269  EAVRRALEAGVDIALVPEERT------KYLKKVVKNGKLPMARIDAAVRRVLRL  316


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 59.8 bits (145),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query  482  NGHHFVARLESKIIGFCVMYMTTNRGTTCCQLAVLAVHPSYQRQGVGTALIAEARTWL  539
             G  FVA  + KI+GF  +    + G        LAVHP Y+ QG+G AL+  A    
Sbjct  2    GGRFFVAEDDGKIVGFAALLPLDDEGALAELR--LAVHPEYRGQGIGRALLEAAEAAA  57



Lambda      K        H        a         alpha
   0.319    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 822932820


Query= TCONS_00022687

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         199     5e-60


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 199 bits (507),  Expect = 5e-60, Method: Composition-based stats.
 Identities = 111/366 (30%), Positives = 179/366 (49%), Gaps = 18/366 (5%)

Query  6    YIASAAIGCWLSDPCNAFLGRRGAIFISAIFCVLTPIGSAVA---QTWPQLFVTRLLLGL  62
            +     IG   +       GR+ ++ I+ +  V+  +    A    +  QL V R+L+G+
Sbjct  55   FSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGI  114

Query  63   GMGLKASTVPIFCAENTPASVRGGLVMCWQLWTAFGIFLGFSANLAVKDTGDI-AWRLQF  121
            G+G  +   P++ +E  P  +RG L   +QL   FGI L +   L +  T +   WR+  
Sbjct  115  GVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPL  174

Query  122  GSAFIPAIPLLVGVYFCPESPRWYIKKGNMKGAFKSLCRLRNSRLQAARDLYYIYAQIKV  181
            G   +PA+ L++G+ F PESPRW ++KG ++ A + L +LR       R+L  I   ++ 
Sbjct  175  GLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPD-VDRELDEIKDSLEA  233

Query  182  EQEIAGEGNYLTRFVELFTIPRVRRATLASFVVMIAQQMCGINIVAFYSSTVFAQAGASN  241
             QE          + ELF+    R+  L   ++ I QQ+ GIN + +YS+T+F   G S+
Sbjct  234  GQEA-----EKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSD  288

Query  242  TEALFASWGFGLVNFLFAFPAVFTIDTFGRRTLLLFTFPQMA-WTLLAAAFCFYIPEESK  300
            +     +   G+VNF+F F A+F +D FGRR LLL     MA   ++          +S 
Sbjct  289  S--FLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSD  346

Query  301  AHLACIALFVFLFAAFYSPGEGPVPFTYSAEVFPLSHRGK---CAFCILHLLGWAAVLSI  357
                   +F+ LF AF++ G GPVP+   +E+FPLS R K    A     L     ++  
Sbjct  347  WAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWL--ANFLIGF  404

Query  358  TFPRML  363
             FP + 
Sbjct  405  LFPIIT  410



Lambda      K        H        a         alpha
   0.330    0.141    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00022686

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         199     5e-60


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 199 bits (507),  Expect = 5e-60, Method: Composition-based stats.
 Identities = 111/366 (30%), Positives = 179/366 (49%), Gaps = 18/366 (5%)

Query  6    YIASAAIGCWLSDPCNAFLGRRGAIFISAIFCVLTPIGSAVA---QTWPQLFVTRLLLGL  62
            +     IG   +       GR+ ++ I+ +  V+  +    A    +  QL V R+L+G+
Sbjct  55   FSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGI  114

Query  63   GMGLKASTVPIFCAENTPASVRGGLVMCWQLWTAFGIFLGFSANLAVKDTGDI-AWRLQF  121
            G+G  +   P++ +E  P  +RG L   +QL   FGI L +   L +  T +   WR+  
Sbjct  115  GVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPL  174

Query  122  GSAFIPAIPLLVGVYFCPESPRWYIKKGNMKGAFKSLCRLRNSRLQAARDLYYIYAQIKV  181
            G   +PA+ L++G+ F PESPRW ++KG ++ A + L +LR       R+L  I   ++ 
Sbjct  175  GLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPD-VDRELDEIKDSLEA  233

Query  182  EQEIAGEGNYLTRFVELFTIPRVRRATLASFVVMIAQQMCGINIVAFYSSTVFAQAGASN  241
             QE          + ELF+    R+  L   ++ I QQ+ GIN + +YS+T+F   G S+
Sbjct  234  GQEA-----EKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSD  288

Query  242  TEALFASWGFGLVNFLFAFPAVFTIDTFGRRTLLLFTFPQMA-WTLLAAAFCFYIPEESK  300
            +     +   G+VNF+F F A+F +D FGRR LLL     MA   ++          +S 
Sbjct  289  S--FLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSD  346

Query  301  AHLACIALFVFLFAAFYSPGEGPVPFTYSAEVFPLSHRGK---CAFCILHLLGWAAVLSI  357
                   +F+ LF AF++ G GPVP+   +E+FPLS R K    A     L     ++  
Sbjct  347  WAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWL--ANFLIGF  404

Query  358  TFPRML  363
             FP + 
Sbjct  405  LFPIIT  410



Lambda      K        H        a         alpha
   0.330    0.141    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00027275

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         184     3e-55


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 184 bits (468),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 99/318 (31%), Positives = 156/318 (49%), Gaps = 15/318 (5%)

Query  1    MGLKASTVPIFCAENTPASVRGGLVMCWQLWTAFGIFLGFSANLAVKDTGDI-AWRLQFG  59
            +G  +   P++ +E  P  +RG L   +QL   FGI L +   L +  T +   WR+  G
Sbjct  116  VGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLG  175

Query  60   SAFIPAIPLLVGVYFCPESPRWYIKKGNMKGAFKSLCRLRNSRLQAARDLYYIYAQIKVE  119
               +PA+ L++G+ F PESPRW ++KG ++ A + L +LR       R+L  I   ++  
Sbjct  176  LQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPD-VDRELDEIKDSLEAG  234

Query  120  QEIAGEGNYLTRFVELFTIPRVRRATLASFVVMIAQQMCGINIVAFYSSTVFAQAGASNT  179
            QE          + ELF+    R+  L   ++ I QQ+ GIN + +YS+T+F   G S++
Sbjct  235  QEA-----EKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDS  289

Query  180  EALFASWGFGLVNFLFAFPAVFTIDTFGRRTLLLFTFPQMA-WTLLAAAFCFYIPEESKA  238
                 +   G+VNF+F F A+F +D FGRR LLL     MA   ++          +S  
Sbjct  290  --FLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDW  347

Query  239  HLACIALFVFLFAAFYSPGEGPVPFTYSAEVFPLSHRGK---CAFCILHLLGWAAVLSIT  295
                  +F+ LF AF++ G GPVP+   +E+FPLS R K    A     L     ++   
Sbjct  348  AGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWL--ANFLIGFL  405

Query  296  FPRMLAVMTPTGAFCFYA  313
            FP +   +     F  +A
Sbjct  406  FPIITDAIGLGYTFFIFA  423



Lambda      K        H        a         alpha
   0.331    0.141    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00022688

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00027277

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00027278

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00022689

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00022690

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00022691

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00027279

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.121    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00022697

Length=560


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 699392304


Query= TCONS_00022692

Length=594


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 750202856


Query= TCONS_00027280

Length=605


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 766641564


Query= TCONS_00022693

Length=431


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00022694

Length=775


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 990958512


Query= TCONS_00022695

Length=583


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 733764148


Query= TCONS_00022696

Length=560


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 699392304


Query= TCONS_00027281

Length=360


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00022699

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395743 pfam00929, RNase_T, Exonuclease. This family includes ...  94.0    2e-25


>CDD:395743 pfam00929, RNase_T, Exonuclease.  This family includes a variety 
of exonuclease proteins, such as ribonuclease T and the 
epsilon subunit of DNA polymerase III.;.
Length=164

 Score = 94.0 bits (234),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 59/164 (36%), Gaps = 8/164 (5%)

Query  1    MTGLNPETDTILQICCYITDANLNLLDPEGFETIIHHDRSVLDSMSPWCVDTHGRTGLTA  60
             TGL+PE D I++I   + D   N +    F T +   R  L  ++  C    G T    
Sbjct  7    TTGLDPEKDEIIEIAAVVIDGGENEIGET-FHTYVKPTR--LPKLTDECTKFTGITQAML  63

Query  61   AVLASTTNSTTAAESLLAYIQRYVPHPRTALLAGNSVHADKMFLAKEPYKAVLEWLHYRI  120
                S           L      V H   +   G   + DK FL K+P   +   +   I
Sbjct  64   DNKPSFEEVLEEFLEFLRKGNLLVAH-NASFDVGFLRYDDKRFL-KKPMPKLNPVIDTLI  121

Query  121  LDVSAFKEAARRWGGETLLREVPPKK--EVHLAREDILESIEEM  162
            LD + +KE   R     L  ++  +     H A +D   + +  
Sbjct  122  LDKATYKELPGRSLDA-LAEKLGLEHIGRAHRALDDARATAKLF  164



Lambda      K        H        a         alpha
   0.320    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0709    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00022698

Length=314


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00027282

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395743 pfam00929, RNase_T, Exonuclease. This family includes ...  71.2    4e-17


>CDD:395743 pfam00929, RNase_T, Exonuclease.  This family includes a variety 
of exonuclease proteins, such as ribonuclease T and the 
epsilon subunit of DNA polymerase III.;.
Length=164

 Score = 71.2 bits (175),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 22/72 (31%), Positives = 30/72 (42%), Gaps = 3/72 (4%)

Query  54   VWIDCEMTGLNPETDTILQICCYITDANLNLLDPEGFETIIHHDRSVLDSMSPWCVDTHG  113
            V ID E TGL+PE D I++I   + D   N +    F T +   R  L  ++  C    G
Sbjct  1    VVIDLETTGLDPEKDEIIEIAAVVIDGGENEIGET-FHTYVKPTR--LPKLTDECTKFTG  57

Query  114  RTGLTAAVLAST  125
             T        S 
Sbjct  58   ITQAMLDNKPSF  69



Lambda      K        H        a         alpha
   0.320    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00027283

Length=319


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00022700

Length=454


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 558268256


Query= TCONS_00022701

Length=605


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 766641564


Query= TCONS_00027284

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427032 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannom...  136     1e-38
CDD:460733 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomann...  92.1    5e-23
CDD:427033 pfam02879, PGM_PMM_II, Phosphoglucomutase/phosphomanno...  73.9    1e-16


>CDD:427032 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannomutase, 
alpha/beta/alpha domain I.  
Length=138

 Score = 136 bits (345),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 53/144 (37%), Positives = 74/144 (51%), Gaps = 7/144 (5%)

Query  13   DQKPGTSGLRKKVKVFQ-QPHYSEAFVTSILLSIPEGAEGAFLVIGGDGRYYNPEVIQKI  71
             Q  GTSG+R KV V +  P ++     +I   +     G  +V+G D RY + E+ + +
Sbjct  1    RQLFGTSGIRGKVGVGELTPEFALKLGQAIASYLRAQGGGGKVVVGRDTRYSSRELARAL  60

Query  72   AKISAAYGVKKLLIGQNGILSTPAASNLIRVRKATGGILLTASHNPGGPNADFGIKYNLC  131
            A   A+ GV+ +L+G   +L TPA S   R  KA GGI++TASHNP   N   GIK    
Sbjct  61   AAGLASNGVEVILLG---LLPTPAVSFATRKLKADGGIMITASHNPPEYN---GIKVFDS  114

Query  132  NGAPAPESVTNKIYETSKSLTSYK  155
            NG P P  V  KI    +    Y+
Sbjct  115  NGGPIPPEVEKKIEAIIEKEDFYR  138


>CDD:460733 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomannomutase, 
alpha/beta/alpha domain III.  
Length=115

 Score = 92.1 bits (230),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 48/124 (39%), Gaps = 11/124 (9%)

Query  296  PGDSLAIIAHHAKLIPWFQKQGVYGLARSMPTSGAVDLVAKAQGLQSYEVPTGWKFFCNL  355
             GD +  +     L       G  G+ +++ +S  +D VAK  G +    P G K+    
Sbjct  1    DGDQILALLAKYLLEQGKLPPGA-GVVKTVMSSLGLDRVAKKLGGKLVRTPVGDKYVKEK  59

Query  356  FDNKKISICGEESFGTGSN--HIREKDGVWAIVAWLNIIAGVAKQKPNETPSIASIQNEF  413
               +     GEES G      H   KDG+ A +  L I+A           S++ +  E 
Sbjct  60   MREEGALFGGEES-GHIIFLDHATTKDGILAALLVLEILA-------RTGKSLSELLEEL  111

Query  414  WQTY  417
             + Y
Sbjct  112  PEKY  115


>CDD:427033 pfam02879, PGM_PMM_II, Phosphoglucomutase/phosphomannomutase, 
alpha/beta/alpha domain II.  
Length=102

 Score = 73.9 bits (182),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 35/104 (34%), Positives = 50/104 (48%), Gaps = 8/104 (8%)

Query  185  DYLKMLKEIFDFDLIKEFLSTHKDFKVLFDGMHGVTGPYGVDIFVKELGLPQDSTMNCVP  244
             Y+  L E+ D + +K+     +  KV++D +HGV G Y  ++  K LG       NC P
Sbjct  1    AYIDHLLELVDSEALKK-----RGLKVVYDPLHGVGGGYLPELL-KRLGC-DVVEENCEP  53

Query  245  SPDFNGGHPDP-NLVYAHELVEAVDKKGIHFGAASDGDGDRNMI  287
             PDF    P+P        L+E V   G   G A+DGD DR  +
Sbjct  54   DPDFPTRAPNPEEPEALALLIELVKSVGADLGIATDGDADRLGV  97



Lambda      K        H        a         alpha
   0.316    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 691920164


Query= TCONS_00022702

Length=605


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 766641564


Query= TCONS_00022703

Length=605


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 766641564


Query= TCONS_00027285

Length=605


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 766641564


Query= TCONS_00027286

Length=605


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.128    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 766641564


Query= TCONS_00027287

Length=248


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00027288

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00022704

Length=138
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395743 pfam00929, RNase_T, Exonuclease. This family includes ...  71.2    4e-17


>CDD:395743 pfam00929, RNase_T, Exonuclease.  This family includes a variety 
of exonuclease proteins, such as ribonuclease T and the 
epsilon subunit of DNA polymerase III.;.
Length=164

 Score = 71.2 bits (175),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 22/72 (31%), Positives = 30/72 (42%), Gaps = 3/72 (4%)

Query  54   VWIDCEMTGLNPETDTILQICCYITDANLNLLDPEGFETIIHHDRSVLDSMSPWCVDTHG  113
            V ID E TGL+PE D I++I   + D   N +    F T +   R  L  ++  C    G
Sbjct  1    VVIDLETTGLDPEKDEIIEIAAVVIDGGENEIGET-FHTYVKPTR--LPKLTDECTKFTG  57

Query  114  RTGLTAAVLAST  125
             T        S 
Sbjct  58   ITQAMLDNKPSF  69



Lambda      K        H        a         alpha
   0.321    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00022705

Length=138
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395743 pfam00929, RNase_T, Exonuclease. This family includes ...  71.2    4e-17


>CDD:395743 pfam00929, RNase_T, Exonuclease.  This family includes a variety 
of exonuclease proteins, such as ribonuclease T and the 
epsilon subunit of DNA polymerase III.;.
Length=164

 Score = 71.2 bits (175),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 22/72 (31%), Positives = 30/72 (42%), Gaps = 3/72 (4%)

Query  54   VWIDCEMTGLNPETDTILQICCYITDANLNLLDPEGFETIIHHDRSVLDSMSPWCVDTHG  113
            V ID E TGL+PE D I++I   + D   N +    F T +   R  L  ++  C    G
Sbjct  1    VVIDLETTGLDPEKDEIIEIAAVVIDGGENEIGET-FHTYVKPTR--LPKLTDECTKFTG  57

Query  114  RTGLTAAVLAST  125
             T        S 
Sbjct  58   ITQAMLDNKPSF  69



Lambda      K        H        a         alpha
   0.321    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00027289

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427032 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannom...  132     5e-41


>CDD:427032 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannomutase, 
alpha/beta/alpha domain I.  
Length=138

 Score = 132 bits (335),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 53/144 (37%), Positives = 74/144 (51%), Gaps = 7/144 (5%)

Query  13   DQKPGTSGLRKKVKVFQ-QPHYSEAFVTSILLSIPEGAEGAFLVIGGDGRYYNPEVIQKI  71
             Q  GTSG+R KV V +  P ++     +I   +     G  +V+G D RY + E+ + +
Sbjct  1    RQLFGTSGIRGKVGVGELTPEFALKLGQAIASYLRAQGGGGKVVVGRDTRYSSRELARAL  60

Query  72   AKISAAYGVKKLLIGQNGILSTPAASNLIRVRKATGGILLTASHNPGGPNADFGIKYNLC  131
            A   A+ GV+ +L+G   +L TPA S   R  KA GGI++TASHNP   N   GIK    
Sbjct  61   AAGLASNGVEVILLG---LLPTPAVSFATRKLKADGGIMITASHNPPEYN---GIKVFDS  114

Query  132  NGAPAPESVTNKIYETSKSLTSYK  155
            NG P P  V  KI    +    Y+
Sbjct  115  NGGPIPPEVEKKIEAIIEKEDFYR  138



Lambda      K        H        a         alpha
   0.314    0.133    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00022707

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427032 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannom...  136     1e-38
CDD:460733 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomann...  92.1    5e-23
CDD:427033 pfam02879, PGM_PMM_II, Phosphoglucomutase/phosphomanno...  73.9    1e-16


>CDD:427032 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannomutase, 
alpha/beta/alpha domain I.  
Length=138

 Score = 136 bits (345),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 53/144 (37%), Positives = 74/144 (51%), Gaps = 7/144 (5%)

Query  13   DQKPGTSGLRKKVKVFQ-QPHYSEAFVTSILLSIPEGAEGAFLVIGGDGRYYNPEVIQKI  71
             Q  GTSG+R KV V +  P ++     +I   +     G  +V+G D RY + E+ + +
Sbjct  1    RQLFGTSGIRGKVGVGELTPEFALKLGQAIASYLRAQGGGGKVVVGRDTRYSSRELARAL  60

Query  72   AKISAAYGVKKLLIGQNGILSTPAASNLIRVRKATGGILLTASHNPGGPNADFGIKYNLC  131
            A   A+ GV+ +L+G   +L TPA S   R  KA GGI++TASHNP   N   GIK    
Sbjct  61   AAGLASNGVEVILLG---LLPTPAVSFATRKLKADGGIMITASHNPPEYN---GIKVFDS  114

Query  132  NGAPAPESVTNKIYETSKSLTSYK  155
            NG P P  V  KI    +    Y+
Sbjct  115  NGGPIPPEVEKKIEAIIEKEDFYR  138


>CDD:460733 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomannomutase, 
alpha/beta/alpha domain III.  
Length=115

 Score = 92.1 bits (230),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 48/124 (39%), Gaps = 11/124 (9%)

Query  296  PGDSLAIIAHHAKLIPWFQKQGVYGLARSMPTSGAVDLVAKAQGLQSYEVPTGWKFFCNL  355
             GD +  +     L       G  G+ +++ +S  +D VAK  G +    P G K+    
Sbjct  1    DGDQILALLAKYLLEQGKLPPGA-GVVKTVMSSLGLDRVAKKLGGKLVRTPVGDKYVKEK  59

Query  356  FDNKKISICGEESFGTGSN--HIREKDGVWAIVAWLNIIAGVAKQKPNETPSIASIQNEF  413
               +     GEES G      H   KDG+ A +  L I+A           S++ +  E 
Sbjct  60   MREEGALFGGEES-GHIIFLDHATTKDGILAALLVLEILA-------RTGKSLSELLEEL  111

Query  414  WQTY  417
             + Y
Sbjct  112  PEKY  115


>CDD:427033 pfam02879, PGM_PMM_II, Phosphoglucomutase/phosphomannomutase, 
alpha/beta/alpha domain II.  
Length=102

 Score = 73.9 bits (182),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 35/104 (34%), Positives = 50/104 (48%), Gaps = 8/104 (8%)

Query  185  DYLKMLKEIFDFDLIKEFLSTHKDFKVLFDGMHGVTGPYGVDIFVKELGLPQDSTMNCVP  244
             Y+  L E+ D + +K+     +  KV++D +HGV G Y  ++  K LG       NC P
Sbjct  1    AYIDHLLELVDSEALKK-----RGLKVVYDPLHGVGGGYLPELL-KRLGC-DVVEENCEP  53

Query  245  SPDFNGGHPDP-NLVYAHELVEAVDKKGIHFGAASDGDGDRNMI  287
             PDF    P+P        L+E V   G   G A+DGD DR  +
Sbjct  54   DPDFPTRAPNPEEPEALALLIELVKSVGADLGIATDGDADRLGV  97



Lambda      K        H        a         alpha
   0.316    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 691920164


Query= TCONS_00022708

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427032 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannom...  136     1e-38
CDD:460733 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomann...  92.1    5e-23
CDD:427033 pfam02879, PGM_PMM_II, Phosphoglucomutase/phosphomanno...  73.9    1e-16


>CDD:427032 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannomutase, 
alpha/beta/alpha domain I.  
Length=138

 Score = 136 bits (345),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 53/144 (37%), Positives = 74/144 (51%), Gaps = 7/144 (5%)

Query  13   DQKPGTSGLRKKVKVFQ-QPHYSEAFVTSILLSIPEGAEGAFLVIGGDGRYYNPEVIQKI  71
             Q  GTSG+R KV V +  P ++     +I   +     G  +V+G D RY + E+ + +
Sbjct  1    RQLFGTSGIRGKVGVGELTPEFALKLGQAIASYLRAQGGGGKVVVGRDTRYSSRELARAL  60

Query  72   AKISAAYGVKKLLIGQNGILSTPAASNLIRVRKATGGILLTASHNPGGPNADFGIKYNLC  131
            A   A+ GV+ +L+G   +L TPA S   R  KA GGI++TASHNP   N   GIK    
Sbjct  61   AAGLASNGVEVILLG---LLPTPAVSFATRKLKADGGIMITASHNPPEYN---GIKVFDS  114

Query  132  NGAPAPESVTNKIYETSKSLTSYK  155
            NG P P  V  KI    +    Y+
Sbjct  115  NGGPIPPEVEKKIEAIIEKEDFYR  138


>CDD:460733 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomannomutase, 
alpha/beta/alpha domain III.  
Length=115

 Score = 92.1 bits (230),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 48/124 (39%), Gaps = 11/124 (9%)

Query  296  PGDSLAIIAHHAKLIPWFQKQGVYGLARSMPTSGAVDLVAKAQGLQSYEVPTGWKFFCNL  355
             GD +  +     L       G  G+ +++ +S  +D VAK  G +    P G K+    
Sbjct  1    DGDQILALLAKYLLEQGKLPPGA-GVVKTVMSSLGLDRVAKKLGGKLVRTPVGDKYVKEK  59

Query  356  FDNKKISICGEESFGTGSN--HIREKDGVWAIVAWLNIIAGVAKQKPNETPSIASIQNEF  413
               +     GEES G      H   KDG+ A +  L I+A           S++ +  E 
Sbjct  60   MREEGALFGGEES-GHIIFLDHATTKDGILAALLVLEILA-------RTGKSLSELLEEL  111

Query  414  WQTY  417
             + Y
Sbjct  112  PEKY  115


>CDD:427033 pfam02879, PGM_PMM_II, Phosphoglucomutase/phosphomannomutase, 
alpha/beta/alpha domain II.  
Length=102

 Score = 73.9 bits (182),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 35/104 (34%), Positives = 50/104 (48%), Gaps = 8/104 (8%)

Query  185  DYLKMLKEIFDFDLIKEFLSTHKDFKVLFDGMHGVTGPYGVDIFVKELGLPQDSTMNCVP  244
             Y+  L E+ D + +K+     +  KV++D +HGV G Y  ++  K LG       NC P
Sbjct  1    AYIDHLLELVDSEALKK-----RGLKVVYDPLHGVGGGYLPELL-KRLGC-DVVEENCEP  53

Query  245  SPDFNGGHPDP-NLVYAHELVEAVDKKGIHFGAASDGDGDRNMI  287
             PDF    P+P        L+E V   G   G A+DGD DR  +
Sbjct  54   DPDFPTRAPNPEEPEALALLIELVKSVGADLGIATDGDADRLGV  97



Lambda      K        H        a         alpha
   0.316    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 691920164


Query= TCONS_00027290

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427032 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannom...  103     3e-30


>CDD:427032 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannomutase, 
alpha/beta/alpha domain I.  
Length=138

 Score = 103 bits (260),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 41/108 (38%), Positives = 60/108 (56%), Gaps = 4/108 (4%)

Query  13   DQKPGTSGLRKKVKVFQ-QPHYSEAFVTSILLSIPEGAEGAFLVIGGDGRYYNPEVIQKI  71
             Q  GTSG+R KV V +  P ++     +I   +     G  +V+G D RY + E+ + +
Sbjct  1    RQLFGTSGIRGKVGVGELTPEFALKLGQAIASYLRAQGGGGKVVVGRDTRYSSRELARAL  60

Query  72   AKISAAYGVKKLLIGQNGILSTPAASNLIRVRKATGGILLTASHNPGG  119
            A   A+ GV+ +L+G   +L TPA S   R  KA GGI++TASHNP  
Sbjct  61   AAGLASNGVEVILLG---LLPTPAVSFATRKLKADGGIMITASHNPPE  105



Lambda      K        H        a         alpha
   0.316    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00027291

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460870 pfam03271, EB1, EB1-like C-terminal motif. This motif ...  72.9    4e-18


>CDD:460870 pfam03271, EB1, EB1-like C-terminal motif.  This motif is found 
at the C-terminus of proteins that are related to the EB1 
protein. The EB1 proteins contain an N-terminal CH domain pfam00307. 
The human EB1 protein was originally discovered as 
a protein interacting with the C-terminus of the APC protein. 
This interaction is often disrupted in colon cancer, due 
to deletions affecting the APC C-terminus. Several EB1 orthologues 
are also included in this family. The interaction between 
EB1 and APC has been shown to have a potent synergistic 
effect on microtubule polymerization. Neither of EB1 or APC 
alone has this effect. It is thought that EB1 targets APC to 
the + ends of microtubules, where APC promotes microtubule 
polymerization. This process is regulated by APC phosphorylation 
by Cdc2, which disrupts APC-EB1 binding. Human EB1 protein 
can functionally substitute for the yeast EB1 homolog Mal3. 
In addition, Mal3 can substitute for human EB1 in promoting 
microtubule polymerization with APC.
Length=41

 Score = 72.9 bits (180),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 27/46 (59%), Positives = 34/46 (74%), Gaps = 5/46 (11%)

Query  126  LEKERDFYFAKLRDIELLLQNAIEADPELEKDEDSLVKHIQGILYS  171
            LEKERDFYF KLRDIE+L Q     + E +++ED L+K IQ ILY+
Sbjct  1    LEKERDFYFNKLRDIEILCQ-----EEEEDEEEDPLIKKIQDILYA  41



Lambda      K        H        a         alpha
   0.318    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00027293

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460870 pfam03271, EB1, EB1-like C-terminal motif. This motif ...  72.9    4e-18


>CDD:460870 pfam03271, EB1, EB1-like C-terminal motif.  This motif is found 
at the C-terminus of proteins that are related to the EB1 
protein. The EB1 proteins contain an N-terminal CH domain pfam00307. 
The human EB1 protein was originally discovered as 
a protein interacting with the C-terminus of the APC protein. 
This interaction is often disrupted in colon cancer, due 
to deletions affecting the APC C-terminus. Several EB1 orthologues 
are also included in this family. The interaction between 
EB1 and APC has been shown to have a potent synergistic 
effect on microtubule polymerization. Neither of EB1 or APC 
alone has this effect. It is thought that EB1 targets APC to 
the + ends of microtubules, where APC promotes microtubule 
polymerization. This process is regulated by APC phosphorylation 
by Cdc2, which disrupts APC-EB1 binding. Human EB1 protein 
can functionally substitute for the yeast EB1 homolog Mal3. 
In addition, Mal3 can substitute for human EB1 in promoting 
microtubule polymerization with APC.
Length=41

 Score = 72.9 bits (180),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 27/46 (59%), Positives = 34/46 (74%), Gaps = 5/46 (11%)

Query  126  LEKERDFYFAKLRDIELLLQNAIEADPELEKDEDSLVKHIQGILYS  171
            LEKERDFYF KLRDIE+L Q     + E +++ED L+K IQ ILY+
Sbjct  1    LEKERDFYFNKLRDIEILCQ-----EEEEDEEEDPLIKKIQDILYA  41



Lambda      K        H        a         alpha
   0.318    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00022709

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00022710

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00022711

Length=157
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461825 pfam06089, Asparaginase_II, L-asparaginase II. This fa...  177     2e-56


>CDD:461825 pfam06089, Asparaginase_II, L-asparaginase II.  This family consists 
of several bacterial L-asparaginase II proteins. L-asparaginase 
(EC:3.5.1.1) catalyzes the hydrolysis of L-asparagine 
to L-aspartate and ammonium. Rhizobium etli possesses 
two asparaginases: asparaginase I, which is thermostable and 
constitutive, and asparaginase II, which is thermolabile, induced 
by asparagine and repressed by the carbon source.
Length=320

 Score = 177 bits (452),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 60/111 (54%), Positives = 72/111 (65%), Gaps = 0/111 (0%)

Query  13   YRGEVVENRHKVHASVVDATGKQHFHVGDPSRITLARSAAKPAQALAILETGAFEQFDLD  72
             RG +VE+ H+ HA VVDA G+     GDP R T  RSAAKP QALA+LE+GA E+F LD
Sbjct  2    VRGGLVESVHRGHAVVVDADGRVLASAGDPDRPTFPRSAAKPFQALALLESGAAERFGLD  61

Query  73   DADLALMCASHSSEERHITRARNMLAKAQVKEDDLRCGGHPALSATVNIEL  123
            D +LAL CASHS E  H+ R R++LAKA + E  LRCG H  L       L
Sbjct  62   DEELALACASHSGEPFHVERVRSILAKAGLDESALRCGPHLPLDEAARRAL  112



Lambda      K        H        a         alpha
   0.318    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00022712

Length=355
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461825 pfam06089, Asparaginase_II, L-asparaginase II. This fa...  436     4e-155


>CDD:461825 pfam06089, Asparaginase_II, L-asparaginase II.  This family consists 
of several bacterial L-asparaginase II proteins. L-asparaginase 
(EC:3.5.1.1) catalyzes the hydrolysis of L-asparagine 
to L-aspartate and ammonium. Rhizobium etli possesses 
two asparaginases: asparaginase I, which is thermostable and 
constitutive, and asparaginase II, which is thermolabile, induced 
by asparagine and repressed by the carbon source.
Length=320

 Score = 436 bits (1125),  Expect = 4e-155, Method: Composition-based stats.
 Identities = 151/336 (45%), Positives = 191/336 (57%), Gaps = 29/336 (9%)

Query  13   YRGEVVENRHKVHASVVDATGKQHFHVGDPSRITLARSAAKPAQALAILETGAFEQFDLD  72
             RG +VE+ H+ HA VVDA G+     GDP R T  RSAAKP QALA+LE+GA E+F LD
Sbjct  2    VRGGLVESVHRGHAVVVDADGRVLASAGDPDRPTFPRSAAKPFQALALLESGAAERFGLD  61

Query  73   DADLALMCASHSSEERHITRARNMLAKAQVKEDDLRCGGHPALH----------GHNPTA  122
            D +LAL CASHS E  H+ R R++LAKA + E  LRCG H  L           G  P+ 
Sbjct  62   DEELALACASHSGEPFHVERVRSILAKAGLDESALRCGPHLPLDEAARRALIRAGGKPSP  121

Query  123  VCNNCSGKHIGMLAATKAVDADIATYHEPTHPLQLRVKRVFEEFLE--AEDVRWSIDGCN  180
            + NNCSGKH GMLAA  A+   +  Y +P HPLQ  ++   EE      +++   +DGC 
Sbjct  122  LHNNCSGKHAGMLAACVALGWPLDGYLDPDHPLQQLIRATVEELTGEPPDEIIVGVDGCG  181

Query  181  LPAPAIPLHCLGRVYATLASSADQMEKNTSVPARTQELNRIFHAMTQYPELVGGDGRFCT  240
             P  A+PL  L R YA LA++ D          R + L RI  AMT +PELV G GRF T
Sbjct  182  APTFALPLTGLARAYARLAAAGDG-------LERAEALERIARAMTAHPELVAGTGRFDT  234

Query  241  VLMRAFQGGLVGKVGADGCYGIGIRASEQTAHLGATGAVGISLKIEDGNINILYSVIMEV  300
             LMRA  G LV K GA+G Y +G+            G +GI++KIEDG+    Y+V   +
Sbjct  235  ELMRATPGRLVAKGGAEGVYCVGLP----------DGGLGIAVKIEDGSTRARYAVAAAL  284

Query  301  FEQLQIRPPEPCSELADFHRPSVVNTAGIVTGRVIP  336
              QL +  PE    LA+F RP V+N  G V G V P
Sbjct  285  LRQLGVLTPEEAEALAEFARPPVLNGRGEVVGEVRP  320



Lambda      K        H        a         alpha
   0.319    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00022713

Length=675


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 858327780


Query= TCONS_00022715

Length=675


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 858327780


Query= TCONS_00022714

Length=675


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 858327780


Query= TCONS_00022716

Length=326


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0643    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00027294

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.147    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00027295

Length=675


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 858327780


Query= TCONS_00022717

Length=351


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00027296

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00022718

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00022719

Length=626


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 786063070


Query= TCONS_00022720

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00027297

Length=368


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00022721

Length=303


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00022722

Length=368


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00022723

Length=368


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00022725

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.492    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00022726

Length=485


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00022727

Length=485


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00022728

Length=485


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00027298

Length=485


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00022729

Length=485


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00022730

Length=485


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00022731

Length=485


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00027299

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00022733

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         188     1e-56


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 188 bits (480),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 150/300 (50%), Gaps = 29/300 (10%)

Query  1    MQAVPAVILGTGVWFLPESPRWLIEKGRKDAGKAVLNRLHLNRTRTNTDLIESEFTQICE  60
            +Q VPA++L  G+ FLPESPRWL+EKGR +  + VL +L           ++ E  +I +
Sbjct  176  LQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKL------RGVPDVDRELDEIKD  229

Query  61   SIASDSRTVVSSWRQLLFSSPTWRHRVLLACGIQAFTQCSGTNVIQVYSPRIYRSLGLPT  120
            S+ +      +SW++L FS+ T R R+L+   +Q F Q +G N I  YS  I+ +LGL  
Sbjct  230  SLEAGQEAEKASWKEL-FSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGL--  286

Query  121  STTLMITGVWGALAQFWNTVF----LLFIDRVGRRKLLIPSLLGMGAALCVEATLARYYG  176
            S + ++T + G      N VF    +  +DR GRR LL+    GM     +   +A    
Sbjct  287  SDSFLVTIIVGV----VNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLG-  341

Query  177  NFAPDADSSVSASPAALRAAIAMFFVFSLFF-TALGLISWLYPAEIFPTAIRARGSSIAT  235
                     VS S  A   AI    +F  FF    G + W+  +E+FP ++R++  ++AT
Sbjct  342  ---------VSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALAT  392

Query  236  ATNWSLNLVFAQCSPIALTTLQ-YKYFYCFVAFNWAAAVIVWACYPETAGKSLEEVGEVF  294
            A NW  N +     PI    +     F+ F        + V+   PET G++LEE+ E+F
Sbjct  393  AANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.324    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00022734

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         188     1e-56


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 188 bits (480),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 150/300 (50%), Gaps = 29/300 (10%)

Query  1    MQAVPAVILGTGVWFLPESPRWLIEKGRKDAGKAVLNRLHLNRTRTNTDLIESEFTQICE  60
            +Q VPA++L  G+ FLPESPRWL+EKGR +  + VL +L           ++ E  +I +
Sbjct  176  LQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKL------RGVPDVDRELDEIKD  229

Query  61   SIASDSRTVVSSWRQLLFSSPTWRHRVLLACGIQAFTQCSGTNVIQVYSPRIYRSLGLPT  120
            S+ +      +SW++L FS+ T R R+L+   +Q F Q +G N I  YS  I+ +LGL  
Sbjct  230  SLEAGQEAEKASWKEL-FSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGL--  286

Query  121  STTLMITGVWGALAQFWNTVF----LLFIDRVGRRKLLIPSLLGMGAALCVEATLARYYG  176
            S + ++T + G      N VF    +  +DR GRR LL+    GM     +   +A    
Sbjct  287  SDSFLVTIIVGV----VNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLG-  341

Query  177  NFAPDADSSVSASPAALRAAIAMFFVFSLFF-TALGLISWLYPAEIFPTAIRARGSSIAT  235
                     VS S  A   AI    +F  FF    G + W+  +E+FP ++R++  ++AT
Sbjct  342  ---------VSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALAT  392

Query  236  ATNWSLNLVFAQCSPIALTTLQ-YKYFYCFVAFNWAAAVIVWACYPETAGKSLEEVGEVF  294
            A NW  N +     PI    +     F+ F        + V+   PET G++LEE+ E+F
Sbjct  393  AANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.324    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00022732

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         303     1e-98
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            72.8    1e-14


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 303 bits (777),  Expect = 1e-98, Method: Composition-based stats.
 Identities = 155/475 (33%), Positives = 241/475 (51%), Gaps = 40/475 (8%)

Query  9    CCILATLGSFLFGYDSGVIGSTLEQAAFLQQF--------DHPSDAVTGGIVSSYNGGAI  60
              ++A LG FLFGYD+GVIG+ L    F + F              ++G IVS ++ G  
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  61   LGSIAAPYICDPFGRRPVMFVGALLA---ALGAALQAGATHVAMLIVGRLIAGFSIGLMA  117
            +GS+ A  + D FGR+  + +  +L    A+      G   V  LIVGR++ G  +G  +
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  118  TTIPIYCSEVAPAHIRGFLGAMQQWMLGLGVVVAQWVGYGCSLHTGAFSWRFPLAMQAVP  177
               P+Y SE+AP  +RG LG++ Q  +  G+++A   G G +  + +  WR PL +Q VP
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVP  180

Query  178  AVILGTGVWFLPESPRWLIEKGRKDAGKAVLNRLHLNRTRTNTDLIESEFTQICESIASD  237
            A++L  G+ FLPESPRWL+EKGR +  + VL +L           ++ E  +I +S+ + 
Sbjct  181  ALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKL------RGVPDVDRELDEIKDSLEAG  234

Query  238  SRTVVSSWRQLLFSSPTWRHRVLLACGIQAFTQCSGTNVIQVYSPRIYRSLGLPTSTTLM  297
                 +SW++ LFS+ T R R+L+   +Q F Q +G N I  YS  I+ +LGL  S + +
Sbjct  235  QEAEKASWKE-LFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGL--SDSFL  291

Query  298  ITGVWGALAQFWNTVF----LLFIDRVGRRKLLIPSLLGMGAALCVEATLARYYGNFAPD  353
            +T + G      N VF    +  +DR GRR LL+    GM     +   +A         
Sbjct  292  VTIIVGV----VNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLG------  341

Query  354  ADSSVSASPAALRAAIAMFFVFSLFF-TALGLISWLYPAEIFPTAIRARGSSIATATNWS  412
                VS S  A   AI    +F  FF    G + W+  +E+FP ++R++  ++ATA NW 
Sbjct  342  ----VSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWL  397

Query  413  LNLVFAQCSPIALTTLQ-YKYFYCFVAFNWAAAVIVWACYPETAGKSLEEVGEVF  466
             N +     PI    +     F+ F        + V+   PET G++LEE+ E+F
Sbjct  398  ANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 72.8 bits (179),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 68/396 (17%), Positives = 127/396 (32%), Gaps = 62/396 (16%)

Query  15   LGSFLFGYDSGVIGSTLEQAAFLQQFDHPSDAVTGGIVSSYNGGAILGSIAAPYICDPFG  74
            L +FL      ++G  L     L +    S    G +++ ++ G  L    A  + D FG
Sbjct  3    LAAFLAALGRSLLGPAL--PLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  75   RRPVMFVGALLAALGAALQAGATHVAMLIVGRLIAGFSIGLMATTIPIYCSEVAPAHIRG  134
            RR V+ +G LL ALG  L   A+ + +L+V R++ G   G +        ++  P   RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  135  FLGAMQQWMLGLGVVVAQWVGYGCSLHTGAFSWRFPLAMQAVPAVILGTGVWFLPESPRW  194
                +     GLG  +   +G         F WR    + A+ +++    +      P  
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLL---ASLFGWRAAFLILAILSLLAAVLLLLPRPPPES  177

Query  195  LIEKGRKDAGKAVLNRLHLNRTRTNTDLIESEFTQICESIASDSRTVVSSWRQLLFSSPT  254
               K  ++A                                    +++ +W+ L      
Sbjct  178  KRPKPAEEARL----------------------------------SLIVAWKAL------  197

Query  255  WRHRVLLACGIQAFTQCSGTNVIQVYSPRIYRSLGLPTSTTLMITGVWGALAQFWNTVFL  314
                 +L   +           +  Y P     LGL      ++ G+ G L      +  
Sbjct  198  -LRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLG  256

Query  315  LFIDRVGRRKLLIPSLLGMGAALCVEATLARYYGNFAPDADSSVSASPAALRAAIAMFFV  374
               DR+GRR+ L+ +LL +  A                     + +   +    +    +
Sbjct  257  RLSDRLGRRRRLLLALLLLILAALG----------------LLLLSLTLSSLWLLLALLL  300

Query  375  FSLFFTALGLISWLYPAEIFPTAIRARGSSIATATN  410
                F  +        +++ P   R   S +     
Sbjct  301  LGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAG  336



Lambda      K        H        a         alpha
   0.326    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00027300

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         213     1e-65


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 213 bits (544),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 106/334 (32%), Positives = 167/334 (50%), Gaps = 29/334 (9%)

Query  1    MQQWMLGLGVVVAQWVGYGCSLHTGAFSWRFPLAMQAVPAVILGTGVWFLPESPRWLIEK  60
            + Q  +  G+++A   G G +  + +  WR PL +Q VPA++L  G+ FLPESPRWL+EK
Sbjct  142  LYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEK  201

Query  61   GRKDAGKAVLNRLHLNRTRTNTDLIESEFTQICESIASDSRTVVSSWRQLLFSSPTWRHR  120
            GR +  + VL +L           ++ E  +I +S+ +      +SW++ LFS+ T R R
Sbjct  202  GRLEEAREVLAKL------RGVPDVDRELDEIKDSLEAGQEAEKASWKE-LFSTKTRRQR  254

Query  121  VLLACGIQAFTQCSGTNVIQVYSPRIYRSLGLPTSTTLMITGVWGALAQFWNTVF----L  176
            +L+   +Q F Q +G N I  YS  I+ +LGL  S + ++T + G      N VF    +
Sbjct  255  LLIGVMLQIFQQLTGINAIFYYSTTIFENLGL--SDSFLVTIIVGV----VNFVFTFIAI  308

Query  177  LFIDRVGRRKLLIPSLLGMGAALCVEATLARYYGNFAPDADSSVSASPAALRAAIAMFFV  236
              +DR GRR LL+    GM     +   +A             VS S  A   AI    +
Sbjct  309  FLVDRFGRRPLLLLGAAGMAICFVILGIVALLG----------VSKSDWAGIVAIVFIAL  358

Query  237  FSLFF-TALGLISWLYPAEIFPTAIRARGSSIATATNWSLNLVFAQCSPIALTTLQ-YKY  294
            F  FF    G + W+  +E+FP ++R++  ++ATA NW  N +     PI    +     
Sbjct  359  FIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYT  418

Query  295  FYCFVAFNWAAAVIVWACYPETAGKSLEEVGEVF  328
            F+ F        + V+   PET G++LEE+ E+F
Sbjct  419  FFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.325    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00022735

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.148    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00027301

Length=861
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425785 pfam00628, PHD, PHD-finger. PHD folds into an interlea...  62.5    4e-13


>CDD:425785 pfam00628, PHD, PHD-finger.  PHD folds into an interleaved type 
of Zn-finger chelating 2 Zn ions in a similar manner to that 
of the RING and FYVE domains. Several PHD fingers have been 
identified as binding modules of methylated histone H3.
Length=51

 Score = 62.5 bits (152),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query  497  FC-ICRKGDDHTWMIACDGGCDDWFHGKCINIDPKDADLID-KYICPNCK  544
            +C +C K DD   ++ CDG CDDWFH  C+      A++   +++CP CK
Sbjct  1    YCAVCGKSDDGGELVQCDG-CDDWFHLACLGPPLDPAEIPSGEWLCPECK  49



Lambda      K        H        a         alpha
   0.312    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1099603724


Query= TCONS_00022736

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00022737

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425785 pfam00628, PHD, PHD-finger. PHD folds into an interlea...  56.7    3e-11


>CDD:425785 pfam00628, PHD, PHD-finger.  PHD folds into an interleaved type 
of Zn-finger chelating 2 Zn ions in a similar manner to that 
of the RING and FYVE domains. Several PHD fingers have been 
identified as binding modules of methylated histone H3.
Length=51

 Score = 56.7 bits (137),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query  497  FC-ICRKGDDHTWMIACDGGCDDWFHGKCINIDPKDADLID-KYICES  542
            +C +C K DD   ++ CDG CDDWFH  C+      A++   +++C  
Sbjct  1    YCAVCGKSDDGGELVQCDG-CDDWFHLACLGPPLDPAEIPSGEWLCPE  47



Lambda      K        H        a         alpha
   0.313    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00027303

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00022740

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00022741

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00022742

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366771 pfam01717, Meth_synt_2, Cobalamin-independent synthase...  67.8    4e-13


>CDD:366771 pfam01717, Meth_synt_2, Cobalamin-independent synthase, Catalytic 
domain.  This is a family of vitamin-B12 independent methionine 
synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine 
methyltransferases, EC:2.1.1.14 from bacteria 
and plants. Plants are the only higher eukaryotes that have 
the required enzymes for methionine synthesis. This enzyme catalyzes 
the last step in the production of methionine by transferring 
a methyl group from 5-methyltetrahydrofolate to homocysteine. 
The aligned region makes up the carboxy region 
of the approximately 750 amino acid protein except in some hypothetical 
archaeal proteins present in the family, where this 
region corresponds to the entire length. This domain contains 
the catalytic residues of the enzyme.
Length=323

 Score = 67.8 bits (166),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 79/385 (21%), Positives = 126/385 (33%), Gaps = 74/385 (19%)

Query  15   LGSLLRTKELLKVKTAFEKGQASAAELKAVEERDIKDIVETQKKLGYAALSDGEYCRHMF  74
            +GS  +T E+   +  F+KG+ S  E +     +I+D V  Q++LG   L  GE  R   
Sbjct  6    IGSFPQTAEIRAARVEFKKGEISLEEYELRIRGEIEDAVRRQERLGLDVLVHGEPERGDM  65

Query  75   WGSFFPGLEGFEEVTDFDADIFRPYAPDVAAFLEAGHKPGETVICTGKIKHVGSTYVDQF  134
               F   L GF    +            V ++     +P   +I     +    T     
Sbjct  66   VEYFGEALGGFAFTKN----------GWVQSYGSRCVRPP--IIYGDVSRPAPMTVKWSA  113

Query  135  KHLASLVAPEEVKNLKLTLAAP----NWYHLRYKNGKAFPKDVYSTEDEYLSDIAKAYQE  190
               A     + VK +   L  P    NW         +F +D           IA A ++
Sbjct  114  --YAQSTTDKPVKGM---LTGPVTILNW---------SFVRDDQP-RAAIAMQIALALRD  158

Query  191  ELQILYDAGCRNVQFDDPNLAYFCSEKMLEGWKADPLNTATADEMFDKYVKQYNELLSKR  250
            E+  L  AG   +Q D+P L         EG    PL         D  V  +   L   
Sbjct  159  EVADLEAAGIAVIQIDEPAL--------REGL---PLKKLDWAAYLDWAVAAF--RLDTC  205

Query  251  PA--DLHVGVHICRGNFVGSRHFSEGGYDRIATKLFKELNVDTYYLEYDTPRAGGFEPLK  308
             A  D  +  H+C  +F             IA      L+ D   +E         E  +
Sbjct  206  GAADDTQIHTHMCYSDF-------NDILSAIA-----ALDADVITIEASRSDMELLEAFE  253

Query  309  ELPRHKNVILGVVTSKFPKLEDKEEMKKRVYDAAKFIAEGNNISVEEALKQVGVSPQCGF  368
            E    + +  GV     P++   EE+   +  A   +              + V+P CG 
Sbjct  254  EWGYGRGIGPGVYDIHSPRVPSMEEIAALIVAALDVVPAER----------LWVNPDCGL  303

Query  369  ASHREGNAIDWDGMINKLKLVREIA  393
             +        W+     L+ + + A
Sbjct  304  KTRG------WEEARAALRNMVDAA  322



Lambda      K        H        a         alpha
   0.318    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00022743

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00022745

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.532    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00022744

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.532    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00022746

Length=587
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases grou...  85.0    6e-20
CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1  62.9    2e-12


>CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.  Mutations 
in this domain of PIGA lead to disease (Paroxysmal 
Nocturnal haemoglobinuria). Members of this family transfer 
activated sugars to a variety of substrates, including glycogen, 
Fructose-6-phosphate and lipopolysaccharides. Members of 
this family transfer UDP, ADP, GDP or CMP linked sugars. The 
eukaryotic glycogen synthases may be distant members of this 
family.
Length=158

 Score = 85.0 bits (211),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 81/173 (47%), Gaps = 20/173 (12%)

Query  349  EDEYIIQIARFDPSKGIFDVVESYEKFYNRLTAALPDEKPP-KLLICGHGSIDDPDGSLI  407
            + + I+ + R +P KG+  +++++          L ++ P  KL+I G G  +     L 
Sbjct  1    KKKIILFVGRLEPEKGLDLLIKAFAL--------LKEKNPNLKLVIAGDGEEEKRLKKLA  52

Query  408  YDAVVSHIEHNIPYLIEQICVMRLGPSDQILNALMSKAKVALQLSTREGFEVKVSEAVHK  467
                   +  N+ +L           SD+ L  L+  A V +  S  EGF + + EA+  
Sbjct  53   EKL---GLGDNVIFLGFV--------SDEDLPELLKIADVFVLPSRYEGFGIVLLEAMAC  101

Query  468  GTPIIATRAGGIPLQVENNRSGFLVDVGDTDAVAEYLFKLFTDEEFYGEMSRY  520
            G P+IA+  GG P  V++  +GFLV   + +A+AE + KL  DEE    +   
Sbjct  102  GLPVIASDVGGPPEVVKDGETGFLVKPNNAEALAEAIDKLLEDEELRERLGEN  154


>CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.  
Length=138

 Score = 62.9 bits (154),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 36/121 (30%), Positives = 62/121 (51%), Gaps = 17/121 (14%)

Query  390  KLLICGHGSIDDPDGSLIYDAVVSHIEHNIPYLIEQICVMRLGPSDQILNALMSKAKVAL  449
            +L+I G G  ++       + + + +E           V+  G  +  L  L++ A V +
Sbjct  35   RLVIVGDGPEEE------LEELAAGLEDR---------VIFTGFVED-LAELLAAADVFV  78

Query  450  QLSTREGFEVKVSEAVHKGTPIIATRAGGIPLQVENNRSGFLVDVGDTDAVAEYLFKLFT  509
              S  EGF +K+ EA+  G P++AT  GGIP ++ +  +G LV  GD +A+AE + +L  
Sbjct  79   LPSLYEGFGLKLLEAMAAGLPVVATDVGGIP-ELVDGENGLLVPPGDPEALAEAILRLLE  137

Query  510  D  510
            D
Sbjct  138  D  138



Lambda      K        H        a         alpha
   0.319    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 739741860


Query= TCONS_00027304

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00027305

Length=501


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 620767060


Query= TCONS_00022747

Length=485


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00022748

Length=694
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases grou...  85.0    7e-20
CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1  63.3    2e-12


>CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.  Mutations 
in this domain of PIGA lead to disease (Paroxysmal 
Nocturnal haemoglobinuria). Members of this family transfer 
activated sugars to a variety of substrates, including glycogen, 
Fructose-6-phosphate and lipopolysaccharides. Members of 
this family transfer UDP, ADP, GDP or CMP linked sugars. The 
eukaryotic glycogen synthases may be distant members of this 
family.
Length=158

 Score = 85.0 bits (211),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 81/173 (47%), Gaps = 20/173 (12%)

Query  456  EDEYIIQIARFDPSKGIFDVVESYEKFYNRLTAALPDEKPP-KLLICGHGSIDDPDGSLI  514
            + + I+ + R +P KG+  +++++          L ++ P  KL+I G G  +     L 
Sbjct  1    KKKIILFVGRLEPEKGLDLLIKAFAL--------LKEKNPNLKLVIAGDGEEEKRLKKLA  52

Query  515  YDAVVSHIEHNIPYLIEQICVMRLGPSDQILNALMSKAKVALQLSTREGFEVKVSEAVHK  574
                   +  N+ +L           SD+ L  L+  A V +  S  EGF + + EA+  
Sbjct  53   EKL---GLGDNVIFLGFV--------SDEDLPELLKIADVFVLPSRYEGFGIVLLEAMAC  101

Query  575  GTPIIATRAGGIPLQVENNRSGFLVDVGDTDAVAEYLFKLFTDEEFYGEMSRY  627
            G P+IA+  GG P  V++  +GFLV   + +A+AE + KL  DEE    +   
Sbjct  102  GLPVIASDVGGPPEVVKDGETGFLVKPNNAEALAEAIDKLLEDEELRERLGEN  154


>CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.  
Length=138

 Score = 63.3 bits (155),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 36/121 (30%), Positives = 62/121 (51%), Gaps = 17/121 (14%)

Query  497  KLLICGHGSIDDPDGSLIYDAVVSHIEHNIPYLIEQICVMRLGPSDQILNALMSKAKVAL  556
            +L+I G G  ++       + + + +E           V+  G  +  L  L++ A V +
Sbjct  35   RLVIVGDGPEEE------LEELAAGLEDR---------VIFTGFVED-LAELLAAADVFV  78

Query  557  QLSTREGFEVKVSEAVHKGTPIIATRAGGIPLQVENNRSGFLVDVGDTDAVAEYLFKLFT  616
              S  EGF +K+ EA+  G P++AT  GGIP ++ +  +G LV  GD +A+AE + +L  
Sbjct  79   LPSLYEGFGLKLLEAMAAGLPVVATDVGGIP-ELVDGENGLLVPPGDPEALAEAILRLLE  137

Query  617  D  617
            D
Sbjct  138  D  138



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 886348790


Query= TCONS_00027306

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases grou...  83.9    4e-20
CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1  62.9    1e-12


>CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.  Mutations 
in this domain of PIGA lead to disease (Paroxysmal 
Nocturnal haemoglobinuria). Members of this family transfer 
activated sugars to a variety of substrates, including glycogen, 
Fructose-6-phosphate and lipopolysaccharides. Members of 
this family transfer UDP, ADP, GDP or CMP linked sugars. The 
eukaryotic glycogen synthases may be distant members of this 
family.
Length=158

 Score = 83.9 bits (208),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 81/173 (47%), Gaps = 20/173 (12%)

Query  122  EDEYIIQIARFDPSKGIFDVVESYEKFYNRLTAALPDEKPP-KLLICGHGSIDDPDGSLI  180
            + + I+ + R +P KG+  +++++          L ++ P  KL+I G G  +     L 
Sbjct  1    KKKIILFVGRLEPEKGLDLLIKAFAL--------LKEKNPNLKLVIAGDGEEEKRLKKLA  52

Query  181  YDAVVSHIEHNIPYLIEQICVMRLGPSDQILNALMSKAKVALQLSTREGFEVKVSEAVHK  240
                   +  N+ +L           SD+ L  L+  A V +  S  EGF + + EA+  
Sbjct  53   EKL---GLGDNVIFLGFV--------SDEDLPELLKIADVFVLPSRYEGFGIVLLEAMAC  101

Query  241  GTPIIATRAGGIPLQVENNRSGFLVDVGDTDAVAEYLFKLFTDEEFYGEMSRY  293
            G P+IA+  GG P  V++  +GFLV   + +A+AE + KL  DEE    +   
Sbjct  102  GLPVIASDVGGPPEVVKDGETGFLVKPNNAEALAEAIDKLLEDEELRERLGEN  154


>CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.  
Length=138

 Score = 62.9 bits (154),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 36/121 (30%), Positives = 62/121 (51%), Gaps = 17/121 (14%)

Query  163  KLLICGHGSIDDPDGSLIYDAVVSHIEHNIPYLIEQICVMRLGPSDQILNALMSKAKVAL  222
            +L+I G G  ++       + + + +E           V+  G  +  L  L++ A V +
Sbjct  35   RLVIVGDGPEEE------LEELAAGLEDR---------VIFTGFVED-LAELLAAADVFV  78

Query  223  QLSTREGFEVKVSEAVHKGTPIIATRAGGIPLQVENNRSGFLVDVGDTDAVAEYLFKLFT  282
              S  EGF +K+ EA+  G P++AT  GGIP ++ +  +G LV  GD +A+AE + +L  
Sbjct  79   LPSLYEGFGLKLLEAMAAGLPVVATDVGGIP-ELVDGENGLLVPPGDPEALAEAILRLLE  137

Query  283  D  283
            D
Sbjct  138  D  138



Lambda      K        H        a         alpha
   0.319    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00027307

Length=420


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00022749

Length=420


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00027308

Length=485


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00022750

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases grou...  83.9    6e-20
CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1  62.5    1e-12


>CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.  Mutations 
in this domain of PIGA lead to disease (Paroxysmal 
Nocturnal haemoglobinuria). Members of this family transfer 
activated sugars to a variety of substrates, including glycogen, 
Fructose-6-phosphate and lipopolysaccharides. Members of 
this family transfer UDP, ADP, GDP or CMP linked sugars. The 
eukaryotic glycogen synthases may be distant members of this 
family.
Length=158

 Score = 83.9 bits (208),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 81/173 (47%), Gaps = 20/173 (12%)

Query  122  EDEYIIQIARFDPSKGIFDVVESYEKFYNRLTAALPDEKPP-KLLICGHGSIDDPDGSLI  180
            + + I+ + R +P KG+  +++++          L ++ P  KL+I G G  +     L 
Sbjct  1    KKKIILFVGRLEPEKGLDLLIKAFAL--------LKEKNPNLKLVIAGDGEEEKRLKKLA  52

Query  181  YDAVVSHIEHNIPYLIEQICVMRLGPSDQILNALMSKAKVALQLSTREGFEVKVSEAVHK  240
                   +  N+ +L           SD+ L  L+  A V +  S  EGF + + EA+  
Sbjct  53   EKL---GLGDNVIFLGFV--------SDEDLPELLKIADVFVLPSRYEGFGIVLLEAMAC  101

Query  241  GTPIIATRAGGIPLQVENNRSGFLVDVGDTDAVAEYLFKLFTDEEFYGEMSRY  293
            G P+IA+  GG P  V++  +GFLV   + +A+AE + KL  DEE    +   
Sbjct  102  GLPVIASDVGGPPEVVKDGETGFLVKPNNAEALAEAIDKLLEDEELRERLGEN  154


>CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.  
Length=138

 Score = 62.5 bits (153),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 36/121 (30%), Positives = 62/121 (51%), Gaps = 17/121 (14%)

Query  163  KLLICGHGSIDDPDGSLIYDAVVSHIEHNIPYLIEQICVMRLGPSDQILNALMSKAKVAL  222
            +L+I G G  ++       + + + +E           V+  G  +  L  L++ A V +
Sbjct  35   RLVIVGDGPEEE------LEELAAGLEDR---------VIFTGFVED-LAELLAAADVFV  78

Query  223  QLSTREGFEVKVSEAVHKGTPIIATRAGGIPLQVENNRSGFLVDVGDTDAVAEYLFKLFT  282
              S  EGF +K+ EA+  G P++AT  GGIP ++ +  +G LV  GD +A+AE + +L  
Sbjct  79   LPSLYEGFGLKLLEAMAAGLPVVATDVGGIP-ELVDGENGLLVPPGDPEALAEAILRLLE  137

Query  283  D  283
            D
Sbjct  138  D  138



Lambda      K        H        a         alpha
   0.319    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00022751

Length=159
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases grou...  65.4    1e-14
CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1  61.4    3e-13


>CDD:425737 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.  Mutations 
in this domain of PIGA lead to disease (Paroxysmal 
Nocturnal haemoglobinuria). Members of this family transfer 
activated sugars to a variety of substrates, including glycogen, 
Fructose-6-phosphate and lipopolysaccharides. Members of 
this family transfer UDP, ADP, GDP or CMP linked sugars. The 
eukaryotic glycogen synthases may be distant members of this 
family.
Length=158

 Score = 65.4 bits (160),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 32/87 (37%), Positives = 48/87 (55%), Gaps = 0/87 (0%)

Query  6    SDQILNALMSKAKVALQLSTREGFEVKVSEAVHKGTPIIATRAGGIPLQVENNRSGFLVD  65
            SD+ L  L+  A V +  S  EGF + + EA+  G P+IA+  GG P  V++  +GFLV 
Sbjct  68   SDEDLPELLKIADVFVLPSRYEGFGIVLLEAMACGLPVIASDVGGPPEVVKDGETGFLVK  127

Query  66   VGDTDAVAEYLFKLFTDEEFYGEMSRY  92
              + +A+AE + KL  DEE    +   
Sbjct  128  PNNAEALAEAIDKLLEDEELRERLGEN  154


>CDD:463957 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.  
Length=138

 Score = 61.4 bits (150),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 29/73 (40%), Positives = 45/73 (62%), Gaps = 1/73 (1%)

Query  10   LNALMSKAKVALQLSTREGFEVKVSEAVHKGTPIIATRAGGIPLQVENNRSGFLVDVGDT  69
            L  L++ A V +  S  EGF +K+ EA+  G P++AT  GGIP ++ +  +G LV  GD 
Sbjct  67   LAELLAAADVFVLPSLYEGFGLKLLEAMAAGLPVVATDVGGIP-ELVDGENGLLVPPGDP  125

Query  70   DAVAEYLFKLFTD  82
            +A+AE + +L  D
Sbjct  126  EALAEAILRLLED  138



Lambda      K        H        a         alpha
   0.315    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00027309

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         227     3e-71
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            61.3    5e-11


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 227 bits (582),  Expect = 3e-71, Method: Composition-based stats.
 Identities = 134/385 (35%), Positives = 206/385 (54%), Gaps = 26/385 (7%)

Query  9    LAAFAATGSFLFGYDSGVMTDVIASPNFLAFFNTNKTSA-------IIGAINSTFNGGAA  61
            +A  AA G FLFGYD+GV+   +   +F   F  +K+ +       + G I S F+ G  
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  62   IGALQGGLTMDRFGRKFTIQMGALICLVGAILQASA---MNLAMILVGRILAGWAVGLMS  118
            IG+L  G   DRFGRK ++ +  ++ ++GA+LQ +A    ++  ++VGR+L G  VG  S
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  119  MSVPVYQAECAHPRSRGLIVGLAQQMIGVGFIVSTWVGYGSLHAPDTSSFQWRFPLAFQA  178
            +  P+Y +E A  + RG +  L Q  I  G +++   G G      ++S  WR PL  Q 
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKT--SNSDGWRIPLGLQL  178

Query  179  VPALLLVVGMLFMPESPRYLVETEKYDEAMRILKRLHYDGTNDDWIQTEYTEIKATIDAE  238
            VPALLL++G+LF+PESPR+LVE  + +EA  +L +L      D  +      ++A  +AE
Sbjct  179  VPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAE  238

Query  239  KAVMAPGWLIMFQVPQWRTRLMHGVAVQVFTQFTGVNVIGYYQTIMYESLGITGNRATLV  298
            KA     W  +F     R RL+ GV +Q+F Q TG+N I YY T ++E+LG++   + LV
Sbjct  239  KA----SWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSD--SFLV  292

Query  299  AGIYNCVGPIANLIFIIFILDRVGRRRPMMFGAIGISIALI---CEAALNSQNEDGSRHG  355
              I   V  +   I  IF++DR GRR  ++ GA G++I  +     A L     D     
Sbjct  293  TIIVGVVNFVFTFI-AIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSD----W  347

Query  356  YSIGGVVFLFCVTIIFSLSFGPCSW  380
              I  +VF+      F++ +GP  W
Sbjct  348  AGIVAIVFIALFIAFFAMGWGPVPW  372


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 61.3 bits (149),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 66/333 (20%), Positives = 119/333 (36%), Gaps = 51/333 (15%)

Query  45   TSAIIGAINSTFNGGAAIGALQGGLTMDRFGRKFTIQMGALICLVGAILQASAMNLAMIL  104
            +   IG + + F+ G A+     G   DRFGR+  + +G L+  +G +L   A +L ++L
Sbjct  30   SPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLL  89

Query  105  VGRILAGWAVGLMSMSVPVYQAECAHPRSRGLIVGLAQQMIGVGFIVSTWVGYGSLHAPD  164
            V R+L G   G +  +     A+   P  RG  +GL     G+G  +   +G G L    
Sbjct  90   VLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLG-GLL----  144

Query  165  TSSFQWRFPLAFQAVPALLLVVGMLFMPESPRYLVETEKYDEAMRILKRLHYDGTNDDWI  224
             S F WR      A+ +LL  V +L     P                             
Sbjct  145  ASLFGWRAAFLILAILSLLAAVLLLLPRPPPE----------------------------  176

Query  225  QTEYTEIKATIDAEKAVMAPGWLIMFQVPQWRTRLMHGVAVQVFTQFTGVNVIGYYQTIM  284
                          K        ++          +  + + +         +  Y  + 
Sbjct  177  ----------SKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLY  226

Query  285  YESLGITGNRATLVAGIYNCVGPIANLIFIIFILDRVGRRRPMMFGAIGISIALICEAAL  344
             E LG++   A L+ G+   +G     + +  + DR+GRRR ++   + + +A +    L
Sbjct  227  QEVLGLSALLAGLLLGLGGLLG-AIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLL  285

Query  345  NSQNEDGSRHGYSIGGVVFLFCVTIIFSLSFGP  377
            +           S+  ++ L  +   F L F  
Sbjct  286  SLT-------LSSLWLLLALLLLGFGFGLVFPA  311



Lambda      K        H        a         alpha
   0.328    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00022752

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrola...  335     1e-111


>CDD:462937 pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain 
(DUF2235).  This domain, found in various hypothetical bacterial 
proteins, has no known function.
Length=284

 Score = 335 bits (861),  Expect = 1e-111, Method: Composition-based stats.
 Identities = 137/431 (32%), Positives = 175/431 (41%), Gaps = 155/431 (36%)

Query  13   KQFVLCFDGTGNKFCGDESDSNVLKIFRRVSWMKMLDRS---KSHQYHYYQPGIGTYVTS  69
            K+ VLC DGT N F GD+  SNVL+++R       LDRS      Q  YYQPG+GT    
Sbjct  1    KRLVLCCDGTWNNFDGDDPPSNVLRLYR------ALDRSDPDGGPQIVYYQPGVGT----  50

Query  70   NSLSSDGRFHRIKSAYLKAKDSAVGSSFDQHVMGGYKFLMRYYAPGDDIYFIGFSRGAYI  129
                +     R+KS   K  D A GS  D HV   Y+FLMR Y PGD+IY  GFSRGAY 
Sbjct  51   ---GTYVILTRLKSKLDKLLDGAFGSGLDAHVREAYRFLMRNYEPGDEIYLFGFSRGAYT  107

Query  130  ARFLAEMLDYIGLLEAGNEELTRFAWKTFAKWQQRRRGDSEEEKEEKKKLFRFMKAFRET  189
            AR LA M+  +GLL  GNEE   FA+K +   + R +    E  E++K    +MKAFR+T
Sbjct  108  ARSLAGMIHKVGLLTRGNEEQVPFAYKLYRDREDRDQPSEPESTEKRK--PYYMKAFRKT  165

Query  190  FSRPISRIKFIGLFDTVNSVPRFESAWMQR--SKFPYTA---RSSARIIRHAVGIDERRA  244
            FSRP   IKF+G++DTV S+   E  W++R   KFP+T      S    RHA+ +DERRA
Sbjct  166  FSRPDVPIKFLGVWDTVGSLGIPEPPWLRRLNRKFPFTDTSLSPSVEHARHALALDERRA  225

Query  245  KFRQDLISEVKPWSMNKRGPRRWQRHLHHFRHDEGPESEKPNGLPSIVVNDDANVENGPR  304
            KFR  L      W      P +                                      
Sbjct  226  KFRPTL------WERPDDYPPK--------------------------------------  241

Query  305  NTPGRTDQEETGSVYRSADGSRAGSIRSAHHYRSSSPLKRTKFGLAVPMMNPSTEDLASV  364
                                                                        
Sbjct       ------------------------------------------------------------  

Query  365  KSGNSMLSLQVPETGSRAPSEYDEDDEDEKHQDIQEVWFPGGHADIGGGWKLGEGEEWPL  424
                                        E+ QD+++VWFPG H+D+GGG+   E     L
Sbjct  242  ---------------------------PEEGQDLKQVWFPGVHSDVGGGYVDDEL-GESL  273

Query  425  SHAPLVWMVHE  435
            S  PL WM+ E
Sbjct  274  SDIPLAWMIRE  284



Lambda      K        H        a         alpha
   0.318    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 817033660


Query= TCONS_00022755

Length=491
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         282     1e-90
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            74.4    5e-15


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 282 bits (723),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 161/467 (34%), Positives = 249/467 (53%), Gaps = 29/467 (6%)

Query  9    LAAFAATGSFLFGYDSGVMTDVIASPNFLAFFNTNKTSA-------IIGAINSTFNGGAA  61
            +A  AA G FLFGYD+GV+   +   +F   F  +K+ +       + G I S F+ G  
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  62   IGALQGGLTMDRFGRKFTIQMGALICLVGAILQASA---MNLAMILVGRILAGWAVGLMS  118
            IG+L  G   DRFGRK ++ +  ++ ++GA+LQ +A    ++  ++VGR+L G  VG  S
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  119  MSVPVYQAECAHPRSRGLIVGLAQQMIGVGFIVSTWVGYGSLHAPDTSSFQWRFPLAFQA  178
            +  P+Y +E A  + RG +  L Q  I  G +++   G G      ++S  WR PL  Q 
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKT--SNSDGWRIPLGLQL  178

Query  179  VPALLLVVGMLFMPESPRYLVETEKYDEAMRILKRLHYDGTNDDWIQTEYTEIKATIDAE  238
            VPALLL++G+LF+PESPR+LVE  + +EA  +L +L      D  +      ++A  +AE
Sbjct  179  VPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAE  238

Query  239  KAVMAPGWLIMFQVPQWRTRLMHGVAVQVFTQFTGVNVIGYYQTIMYESLGITGNR-ATL  297
            KA     W  +F     R RL+ GV +Q+F Q TG+N I YY T ++E+LG++ +   T+
Sbjct  239  KA----SWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTI  294

Query  298  VAGIYNCVGPIANLIFIIFILDRVGRRRPMMFGAIGISIALI---CEAALNSQNEDGSRH  354
            + G+ N V         IF++DR GRR  ++ GA G++I  +     A L     D    
Sbjct  295  IVGVVNFVFTFIA----IFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSD----  346

Query  355  GYSIGGVVFLFCVTIIFSLSFGPCSWVYMSEVMPMQIRGKGNAFATGIGNWAVATLWAQV  414
               I  +VF+      F++ +GP  WV +SE+ P+ +R K  A AT   NW    L   +
Sbjct  347  WAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAA-NWLANFLIGFL  405

Query  415  SPIALGKLGWKFYFVFVAWNICITLPVIYFCFKETKQKSLEEIDLLF  461
             PI    +G  + F   A  + + +  ++F   ETK ++LEEID LF
Sbjct  406  FPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 74.4 bits (183),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 132/364 (36%), Gaps = 52/364 (14%)

Query  45   TSAIIGAINSTFNGGAAIGALQGGLTMDRFGRKFTIQMGALICLVGAILQASAMNLAMIL  104
            +   IG + + F+ G A+     G   DRFGR+  + +G L+  +G +L   A +L ++L
Sbjct  30   SPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLL  89

Query  105  VGRILAGWAVGLMSMSVPVYQAECAHPRSRGLIVGLAQQMIGVGFIVSTWVGYGSLHAPD  164
            V R+L G   G +  +     A+   P  RG  +GL     G+G  +   +G G L    
Sbjct  90   VLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLG-GLL----  144

Query  165  TSSFQWRFPLAFQAVPALLLVVGMLFMPESPRYLVETEKYDEAMRILKRLHYDGTNDDWI  224
             S F WR      A+ +LL  V +L     P                             
Sbjct  145  ASLFGWRAAFLILAILSLLAAVLLLLPRPPPE----------------------------  176

Query  225  QTEYTEIKATIDAEKAVMAPGWLIMFQVPQWRTRLMHGVAVQVFTQFTGVNVIGYYQTIM  284
                          K        ++          +  + + +         +  Y  + 
Sbjct  177  ----------SKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLY  226

Query  285  YESLGITGNRATLVAGIYNCVGPIANLIFIIFILDRVGRRRPMMFGAIGISIALICEAAL  344
             E LG++   A L+ G+   +G     + +  + DR+GRRR ++   + + +A +    L
Sbjct  227  QEVLGLSALLAGLLLGLGGLLG-AIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLL  285

Query  345  NSQNEDGSRHGYSIGGVVFLFCVTIIFSLSFGPCSWVYMSEVMPMQIRGKGNAFATGIGN  404
            +           S+  ++ L  +   F L F P     +S++ P + RG  +      G+
Sbjct  286  SLT-------LSSLWLLLALLLLGFGFGLVF-PALNALVSDLAPKEERGTASGLYNTAGS  337

Query  405  WAVA  408
               A
Sbjct  338  LGGA  341



Lambda      K        H        a         alpha
   0.326    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 605626400


Query= TCONS_00022754

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         194     3e-58


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 194 bits (496),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 108/312 (35%), Positives = 163/312 (52%), Gaps = 19/312 (6%)

Query  61   WVGYGSLHAPDTSSFQWRFPLAFQAVPALLLVVGMLFMPESPRYLVETEKYDEAMRILKR  120
              G G      ++S  WR PL  Q VPALLL++G+LF+PESPR+LVE  + +EA  +L +
Sbjct  156  IFGLGLNKT--SNSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAK  213

Query  121  LHYDGTNDDWIQTEYTEIKATIDAEKAVMAPGWLIMFQVPQWRTRLMHGVAVQVFTQFTG  180
            L      D  +      ++A  +AEKA     W  +F     R RL+ GV +Q+F Q TG
Sbjct  214  LRGVPDVDRELDEIKDSLEAGQEAEKA----SWKELFSTKTRRQRLLIGVMLQIFQQLTG  269

Query  181  VNVIGYYQTIMYESLGITGNR-ATLVAGIYNCVGPIANLIFIIFILDRVGRRRPMMFGAI  239
            +N I YY T ++E+LG++ +   T++ G+ N V         IF++DR GRR  ++ GA 
Sbjct  270  INAIFYYSTTIFENLGLSDSFLVTIIVGVVNFVFTFIA----IFLVDRFGRRPLLLLGAA  325

Query  240  GISIALI---CEAALNSQNEDGSRHGYSIGGVVFLFCVTIIFSLSFGPCSWVYMSEVMPM  296
            G++I  +     A L     D       I  +VF+      F++ +GP  WV +SE+ P+
Sbjct  326  GMAICFVILGIVALLGVSKSD----WAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPL  381

Query  297  QIRGKGNAFATGIGNWAVATLWAQVSPIALGKLGWKFYFVFVAWNICITLPVIYFCFKET  356
             +R K  A AT   NW    L   + PI    +G  + F   A  + + +  ++F   ET
Sbjct  382  SVRSKAMALATAA-NWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPET  440

Query  357  KQKSLEEIDLLF  368
            K ++LEEID LF
Sbjct  441  KGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.326    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00027310

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         194     3e-58


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 194 bits (496),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 108/312 (35%), Positives = 163/312 (52%), Gaps = 19/312 (6%)

Query  61   WVGYGSLHAPDTSSFQWRFPLAFQAVPALLLVVGMLFMPESPRYLVETEKYDEAMRILKR  120
              G G      ++S  WR PL  Q VPALLL++G+LF+PESPR+LVE  + +EA  +L +
Sbjct  156  IFGLGLNKT--SNSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAK  213

Query  121  LHYDGTNDDWIQTEYTEIKATIDAEKAVMAPGWLIMFQVPQWRTRLMHGVAVQVFTQFTG  180
            L      D  +      ++A  +AEKA     W  +F     R RL+ GV +Q+F Q TG
Sbjct  214  LRGVPDVDRELDEIKDSLEAGQEAEKA----SWKELFSTKTRRQRLLIGVMLQIFQQLTG  269

Query  181  VNVIGYYQTIMYESLGITGNR-ATLVAGIYNCVGPIANLIFIIFILDRVGRRRPMMFGAI  239
            +N I YY T ++E+LG++ +   T++ G+ N V         IF++DR GRR  ++ GA 
Sbjct  270  INAIFYYSTTIFENLGLSDSFLVTIIVGVVNFVFTFIA----IFLVDRFGRRPLLLLGAA  325

Query  240  GISIALI---CEAALNSQNEDGSRHGYSIGGVVFLFCVTIIFSLSFGPCSWVYMSEVMPM  296
            G++I  +     A L     D       I  +VF+      F++ +GP  WV +SE+ P+
Sbjct  326  GMAICFVILGIVALLGVSKSD----WAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPL  381

Query  297  QIRGKGNAFATGIGNWAVATLWAQVSPIALGKLGWKFYFVFVAWNICITLPVIYFCFKET  356
             +R K  A AT   NW    L   + PI    +G  + F   A  + + +  ++F   ET
Sbjct  382  SVRSKAMALATAA-NWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPET  440

Query  357  KQKSLEEIDLLF  368
            K ++LEEID LF
Sbjct  441  KGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.326    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00027311

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         260     7e-83
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            72.1    2e-14


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 260 bits (667),  Expect = 7e-83, Method: Composition-based stats.
 Identities = 151/437 (35%), Positives = 230/437 (53%), Gaps = 27/437 (6%)

Query  9    LAAFAATGSFLFGYDSGVMTDVIASPNFLAFFNTNKTSA-------IIGAINSTFNGGAA  61
            +A  AA G FLFGYD+GV+   +   +F   F  +K+ +       + G I S F+ G  
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  62   IGALQGGLTMDRFGRKFTIQMGALICLVGAILQASA---MNLAMILVGRILAGWAVGLMS  118
            IG+L  G   DRFGRK ++ +  ++ ++GA+LQ +A    ++  ++VGR+L G  VG  S
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  119  MSVPVYQAECAHPRSRGLIVGLAQQMIGVGFIVSTWVGYGSLHAPDTSSFQWRFPLAFQA  178
            +  P+Y +E A  + RG +  L Q  I  G +++   G G      ++S  WR PL  Q 
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKT--SNSDGWRIPLGLQL  178

Query  179  VPALLLVVGMLFMPESPRYLVETEKYDEAMRILKRLHYDGTNDDWIQTEYTEIKATIDAE  238
            VPALLL++G+LF+PESPR+LVE  + +EA  +L +L      D  +      ++A  +AE
Sbjct  179  VPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAE  238

Query  239  KAVMAPGWLIMFQVPQWRTRLMHGVAVQVFTQFTGVNVIGYYQTIMYESLGITGNRATLV  298
            KA     W  +F     R RL+ GV +Q+F Q TG+N I YY T ++E+LG++   + LV
Sbjct  239  KA----SWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSD--SFLV  292

Query  299  AGIYNCVGPIANLIFIIFILDRVGRRRPMMFGAIGISIALI---CEAALNSQNEDGSRHG  355
              I   V  +   I  IF++DR GRR  ++ GA G++I  +     A L     D     
Sbjct  293  TIIVGVVNFVFTFI-AIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSD----W  347

Query  356  YSIGGVVFLFCVTIIFSLSFGPCSWVYMSEVMPMQIRGKGNAFATGIGNWAVATLWAQVS  415
              I  +VF+      F++ +GP  WV +SE+ P+ +R K  A AT   NW    L   + 
Sbjct  348  AGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAA-NWLANFLIGFLF  406

Query  416  PIALGKLGWKFYFVFVA  432
            PI    +G  + F   A
Sbjct  407  PIITDAIGLGYTFFIFA  423


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 72.1 bits (177),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 132/364 (36%), Gaps = 52/364 (14%)

Query  45   TSAIIGAINSTFNGGAAIGALQGGLTMDRFGRKFTIQMGALICLVGAILQASAMNLAMIL  104
            +   IG + + F+ G A+     G   DRFGR+  + +G L+  +G +L   A +L ++L
Sbjct  30   SPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLL  89

Query  105  VGRILAGWAVGLMSMSVPVYQAECAHPRSRGLIVGLAQQMIGVGFIVSTWVGYGSLHAPD  164
            V R+L G   G +  +     A+   P  RG  +GL     G+G  +   +G G L    
Sbjct  90   VLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLG-GLL----  144

Query  165  TSSFQWRFPLAFQAVPALLLVVGMLFMPESPRYLVETEKYDEAMRILKRLHYDGTNDDWI  224
             S F WR      A+ +LL  V +L     P                             
Sbjct  145  ASLFGWRAAFLILAILSLLAAVLLLLPRPPPE----------------------------  176

Query  225  QTEYTEIKATIDAEKAVMAPGWLIMFQVPQWRTRLMHGVAVQVFTQFTGVNVIGYYQTIM  284
                          K        ++          +  + + +         +  Y  + 
Sbjct  177  ----------SKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLY  226

Query  285  YESLGITGNRATLVAGIYNCVGPIANLIFIIFILDRVGRRRPMMFGAIGISIALICEAAL  344
             E LG++   A L+ G+   +G     + +  + DR+GRRR ++   + + +A +    L
Sbjct  227  QEVLGLSALLAGLLLGLGGLLG-AIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLL  285

Query  345  NSQNEDGSRHGYSIGGVVFLFCVTIIFSLSFGPCSWVYMSEVMPMQIRGKGNAFATGIGN  404
            +           S+  ++ L  +   F L F P     +S++ P + RG  +      G+
Sbjct  286  SLT-------LSSLWLLLALLLLGFGFGLVF-PALNALVSDLAPKEERGTASGLYNTAGS  337

Query  405  WAVA  408
               A
Sbjct  338  LGGA  341



Lambda      K        H        a         alpha
   0.327    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00022756

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         263     7e-84
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            77.8    3e-16


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 263 bits (675),  Expect = 7e-84, Method: Composition-based stats.
 Identities = 146/420 (35%), Positives = 225/420 (54%), Gaps = 22/420 (5%)

Query  23   IGAINSTFNGGAAIGALQGGLTMDRFGRKFTIQMGALICLVGAILQASA---MNLAMILV  79
             G I S F+ G  IG+L  G   DRFGRK ++ +  ++ ++GA+LQ +A    ++  ++V
Sbjct  48   SGLIVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIV  107

Query  80   GRILAGWAVGLMSMSVPVYQAECAHPRSRGLIVGLAQQMIGVGFIVSTWVGYGSLHAPDT  139
            GR+L G  VG  S+  P+Y +E A  + RG +  L Q  I  G +++   G G      +
Sbjct  108  GRVLVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKT--S  165

Query  140  SSFQWRFPLAFQAVPALLLVVGMLFMPESPRYLVETEKYDEAMRILKRLHYDGTNDDWIQ  199
            +S  WR PL  Q VPALLL++G+LF+PESPR+LVE  + +EA  +L +L      D  + 
Sbjct  166  NSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELD  225

Query  200  TEYTEIKATIDAEKAVMAPGWLIMFQVPQWRTRLMHGVAVQVFTQFTGVNVIGYYQTIMY  259
                 ++A  +AEKA     W  +F     R RL+ GV +Q+F Q TG+N I YY T ++
Sbjct  226  EIKDSLEAGQEAEKA----SWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIF  281

Query  260  ESLGITGNR-ATLVAGIYNCVGPIANLIFIIFILDRVGRRRPMMFGAIGISIALI---CE  315
            E+LG++ +   T++ G+ N V         IF++DR GRR  ++ GA G++I  +     
Sbjct  282  ENLGLSDSFLVTIIVGVVNFVFTFIA----IFLVDRFGRRPLLLLGAAGMAICFVILGIV  337

Query  316  AALNSQNEDGSRHGYSIGGVVFLFCVTIIFSLSFGPCSWVYMSEVMPMQIRGKGNAFATG  375
            A L     D       I  +VF+      F++ +GP  WV +SE+ P+ +R K  A AT 
Sbjct  338  ALLGVSKSD----WAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATA  393

Query  376  IGNWAVATLWAQVSPIALGKLGWKFYFVFVAWNICITLPVIYFCFKETKQKSLEEIDLLF  435
              NW    L   + PI    +G  + F   A  + + +  ++F   ETK ++LEEID LF
Sbjct  394  A-NWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 77.8 bits (192),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 78/364 (21%), Positives = 137/364 (38%), Gaps = 52/364 (14%)

Query  19   TSAIIGAINSTFNGGAAIGALQGGLTMDRFGRKFTIQMGALICLVGAILQASAMNLAMIL  78
            +   IG + + F+ G A+     G   DRFGR+  + +G L+  +G +L   A +L ++L
Sbjct  30   SPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLL  89

Query  79   VGRILAGWAVGLMSMSVPVYQAECAHPRSRGLIVGLAQQMIGVGFIVSTWVGYGSLHAPD  138
            V R+L G   G +  +     A+   P  RG  +GL     G+G  +   +G G L    
Sbjct  90   VLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLG-GLL----  144

Query  139  TSSFQWRFPLAFQAVPALLLVVGMLFMPESPRYLVETEKYDEAMRILKRLHYDGTNDDWI  198
             S F WR      A+ +LL  V +L     P                             
Sbjct  145  ASLFGWRAAFLILAILSLLAAVLLLLPRPPP-----------------------------  175

Query  199  QTEYTEIKATIDAEKAVMAPGWLIMFQVPQWRTRLMHGVAVQVFTQFTGVNVIGYYQTIM  258
                 E K    AE+A ++        +      L+      +         +  Y  + 
Sbjct  176  -----ESKRPKPAEEARLSLIVAWKALLRDPVLWLLLA----LLLFGFAFFGLLTYLPLY  226

Query  259  YESLGITGNRATLVAGIYNCVGPIANLIFIIFILDRVGRRRPMMFGAIGISIALICEAAL  318
             E LG++   A L+ G+   +G     + +  + DR+GRRR ++   + + +A +    L
Sbjct  227  QEVLGLSALLAGLLLGLGGLLG-AIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLL  285

Query  319  NSQNEDGSRHGYSIGGVVFLFCVTIIFSLSFGPCSWVYMSEVMPMQIRGKGNAFATGIGN  378
            +           S+  ++ L  +   F L F P     +S++ P + RG  +      G+
Sbjct  286  SLT-------LSSLWLLLALLLLGFGFGLVF-PALNALVSDLAPKEERGTASGLYNTAGS  337

Query  379  WAVA  382
               A
Sbjct  338  LGGA  341



Lambda      K        H        a         alpha
   0.326    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 575139000


Query= TCONS_00022757

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         265     5e-83
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            72.8    2e-14


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 265 bits (679),  Expect = 5e-83, Method: Composition-based stats.
 Identities = 154/474 (32%), Positives = 241/474 (51%), Gaps = 48/474 (10%)

Query  105  GYDSGVMTDVIASPNFLAFFNTNKTSA-------IIGAINSTFNGGGMYSLSYCNSAHSL  157
            GYD+GV+   +   +F   F  +K+ +       + G I S F+ G              
Sbjct  13   GYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF------------  60

Query  158  TKTAIAAIGALQGGLTMDRFGRKFTIQMGALICLVGAILQASA---MNLAMILVGRILAG  214
                   IG+L  G   DRFGRK ++ +  ++ ++GA+LQ +A    ++  ++VGR+L G
Sbjct  61   -------IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVG  113

Query  215  WAVGLMSMSVPVYQAECAHPRSRGLIVGLAQQMIGVGFIVSTWVGYGSLHAPDTSSFQWR  274
              VG  S+  P+Y +E A  + RG +  L Q  I  G +++   G G      ++S  WR
Sbjct  114  IGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKT--SNSDGWR  171

Query  275  FPLAFQAVPALLLVVGMLFMPESPRYLVETEKYDEAMRILKRLHYDGTNDDWIQTEYTEI  334
             PL  Q VPALLL++G+LF+PESPR+LVE  + +EA  +L +L      D  +      +
Sbjct  172  IPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSL  231

Query  335  KATIDAEKAVMAPGWLIMFQVPQWRTRLMHGVAVQVFTQFTGVNVIGYYQTIMYESLGIT  394
            +A  +AEKA     W  +F     R RL+ GV +Q+F Q TG+N I YY T ++E+LG++
Sbjct  232  EAGQEAEKA----SWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLS  287

Query  395  GNR-ATLVAGIYNCVGPIANLIFIIFILDRVGRRRPMMFGAIGISIALI---CEAALNSQ  450
             +   T++ G+ N V         IF++DR GRR  ++ GA G++I  +     A L   
Sbjct  288  DSFLVTIIVGVVNFVFTFIA----IFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVS  343

Query  451  NEDGSRHGYSIGGVVFLFCVTIIFSLSFGPCSWVYMSEVMPMQIRGKGNAFATGIGNWAV  510
              D       I  +VF+      F++ +GP  WV +SE+ P+ +R K  A AT   NW  
Sbjct  344  KSD----WAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAA-NWLA  398

Query  511  ATLWAQVSPIALGKLGWKFYFVFVAWNICITLPVIYFCFKETKQKSLEEIDLLF  564
              L   + PI    +G  + F   A  + + +  ++F   ETK ++LEEID LF
Sbjct  399  NFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 72.8 bits (179),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 141/392 (36%), Gaps = 56/392 (14%)

Query  120  FLAFFNTNKTSAIIGAINSTFNGGGMYSLSYCNSAHSLTKTAIAAIGALQGGLTMDRFGR  179
            FLA    +     +  + +   G     +    +  SL      A+     G   DRFGR
Sbjct  6    FLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLG----YALAQPLAGRLSDRFGR  61

Query  180  KFTIQMGALICLVGAILQASAMNLAMILVGRILAGWAVGLMSMSVPVYQAECAHPRSRGL  239
            +  + +G L+  +G +L   A +L ++LV R+L G   G +  +     A+   P  RG 
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  240  IVGLAQQMIGVGFIVSTWVGYGSLHAPDTSSFQWRFPLAFQAVPALLLVVGMLFMPESPR  299
             +GL     G+G  +   +G G L     S F WR      A+ +LL  V +L     P 
Sbjct  122  ALGLVSAGFGLGAALGPLLG-GLL----ASLFGWRAAFLILAILSLLAAVLLLLPRPPP-  175

Query  300  YLVETEKYDEAMRILKRLHYDGTNDDWIQTEYTEIKATIDAEKAVMAPGWLIMFQVPQWR  359
                                             E K    AE+A ++        +    
Sbjct  176  ---------------------------------ESKRPKPAEEARLSLIVAWKALLRDPV  202

Query  360  TRLMHGVAVQVFTQFTGVNVIGYYQTIMYESLGITGNRATLVAGIYNCVGPIANLIFIIF  419
              L+      +         +  Y  +  E LG++   A L+ G+   +G     + +  
Sbjct  203  LWLLLA----LLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLG-AIGRLLLGR  257

Query  420  ILDRVGRRRPMMFGAIGISIALICEAALNSQNEDGSRHGYSIGGVVFLFCVTIIFSLSFG  479
            + DR+GRRR ++   + + +A +    L+           S+  ++ L  +   F L F 
Sbjct  258  LSDRLGRRRRLLLALLLLILAALGLLLLSLT-------LSSLWLLLALLLLGFGFGLVF-  309

Query  480  PCSWVYMSEVMPMQIRGKGNAFATGIGNWAVA  511
            P     +S++ P + RG  +      G+   A
Sbjct  310  PALNALVSDLAPKEERGTASGLYNTAGSLGGA  341



Lambda      K        H        a         alpha
   0.327    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 750202856


Query= TCONS_00022759

Length=575
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         275     6e-87
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            77.5    6e-16


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 275 bits (705),  Expect = 6e-87, Method: Composition-based stats.
 Identities = 154/455 (34%), Positives = 241/455 (53%), Gaps = 29/455 (6%)

Query  105  GYDSGVMTDVIASPNFLAFFNTNKTSA-------IIGAINSTFNGGAAIGALQGGLTMDR  157
            GYD+GV+   +   +F   F  +K+ +       + G I S F+ G  IG+L  G   DR
Sbjct  13   GYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLGDR  72

Query  158  FGRKFTIQMGALICLVGAILQASA---MNLAMILVGRILAGWAVGLMSMSVPVYQAECAH  214
            FGRK ++ +  ++ ++GA+LQ +A    ++  ++VGR+L G  VG  S+  P+Y +E A 
Sbjct  73   FGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEIAP  132

Query  215  PRSRGLIVGLAQQMIGVGFIVSTWVGYGSLHAPDTSSFQWRFPLAFQAVPALLLVVGMLF  274
             + RG +  L Q  I  G +++   G G      ++S  WR PL  Q VPALLL++G+LF
Sbjct  133  KKLRGALGSLYQLAITFGILLAYIFGLGLNKT--SNSDGWRIPLGLQLVPALLLIIGLLF  190

Query  275  MPESPRYLVETEKYDEAMRILKRLHYDGTNDDWIQTEYTEIKATIDAEKAVMAPGWLIMF  334
            +PESPR+LVE  + +EA  +L +L      D  +      ++A  +AEKA     W  +F
Sbjct  191  LPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAEKA----SWKELF  246

Query  335  QVPQWRTRLMHGVAVQVFTQFTGVNVIGYYQTIMYESLGITGNR-ATLVAGIYNCVGPIA  393
                 R RL+ GV +Q+F Q TG+N I YY T ++E+LG++ +   T++ G+ N V    
Sbjct  247  STKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTIIVGVVNFVFTFI  306

Query  394  NLIFIIFILDRVGRRRPMMFGAIGISIALI---CEAALNSQNEDGSRHGYSIGGVVFLFC  450
                 IF++DR GRR  ++ GA G++I  +     A L     D       I  +VF+  
Sbjct  307  A----IFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSD----WAGIVAIVFIAL  358

Query  451  VTIIFSLSFGPCSWVYMSEVMPMQIRGKGNAFATGIGNWAVATLWAQVSPIALGKLGWKF  510
                F++ +GP  WV +SE+ P+ +R K  A AT   NW    L   + PI    +G  +
Sbjct  359  FIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAA-NWLANFLIGFLFPIITDAIGLGY  417

Query  511  YFVFVAWNICITLPVIYFCFKETKQKSLEEIDLLF  545
             F   A  + + +  ++F   ETK ++LEEID LF
Sbjct  418  TFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 77.5 bits (191),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 78/364 (21%), Positives = 137/364 (38%), Gaps = 52/364 (14%)

Query  129  TSAIIGAINSTFNGGAAIGALQGGLTMDRFGRKFTIQMGALICLVGAILQASAMNLAMIL  188
            +   IG + + F+ G A+     G   DRFGR+  + +G L+  +G +L   A +L ++L
Sbjct  30   SPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLL  89

Query  189  VGRILAGWAVGLMSMSVPVYQAECAHPRSRGLIVGLAQQMIGVGFIVSTWVGYGSLHAPD  248
            V R+L G   G +  +     A+   P  RG  +GL     G+G  +   +G G L    
Sbjct  90   VLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLG-GLL----  144

Query  249  TSSFQWRFPLAFQAVPALLLVVGMLFMPESPRYLVETEKYDEAMRILKRLHYDGTNDDWI  308
             S F WR      A+ +LL  V +L     P                             
Sbjct  145  ASLFGWRAAFLILAILSLLAAVLLLLPRPPP-----------------------------  175

Query  309  QTEYTEIKATIDAEKAVMAPGWLIMFQVPQWRTRLMHGVAVQVFTQFTGVNVIGYYQTIM  368
                 E K    AE+A ++        +      L+      +         +  Y  + 
Sbjct  176  -----ESKRPKPAEEARLSLIVAWKALLRDPVLWLLLA----LLLFGFAFFGLLTYLPLY  226

Query  369  YESLGITGNRATLVAGIYNCVGPIANLIFIIFILDRVGRRRPMMFGAIGISIALICEAAL  428
             E LG++   A L+ G+   +G     + +  + DR+GRRR ++   + + +A +    L
Sbjct  227  QEVLGLSALLAGLLLGLGGLLG-AIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLL  285

Query  429  NSQNEDGSRHGYSIGGVVFLFCVTIIFSLSFGPCSWVYMSEVMPMQIRGKGNAFATGIGN  488
            +           S+  ++ L  +   F L F P     +S++ P + RG  +      G+
Sbjct  286  SLT-------LSSLWLLLALLLLGFGFGLVF-PALNALVSDLAPKEERGTASGLYNTAGS  337

Query  489  WAVA  492
               A
Sbjct  338  LGGA  341



Lambda      K        H        a         alpha
   0.327    0.141    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0754    0.140     1.90     42.6     43.6 

Effective search space used: 721808724


Query= TCONS_00022758

Length=491
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         282     1e-90
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            74.4    5e-15


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 282 bits (723),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 161/467 (34%), Positives = 249/467 (53%), Gaps = 29/467 (6%)

Query  9    LAAFAATGSFLFGYDSGVMTDVIASPNFLAFFNTNKTSA-------IIGAINSTFNGGAA  61
            +A  AA G FLFGYD+GV+   +   +F   F  +K+ +       + G I S F+ G  
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  62   IGALQGGLTMDRFGRKFTIQMGALICLVGAILQASA---MNLAMILVGRILAGWAVGLMS  118
            IG+L  G   DRFGRK ++ +  ++ ++GA+LQ +A    ++  ++VGR+L G  VG  S
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  119  MSVPVYQAECAHPRSRGLIVGLAQQMIGVGFIVSTWVGYGSLHAPDTSSFQWRFPLAFQA  178
            +  P+Y +E A  + RG +  L Q  I  G +++   G G      ++S  WR PL  Q 
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKT--SNSDGWRIPLGLQL  178

Query  179  VPALLLVVGMLFMPESPRYLVETEKYDEAMRILKRLHYDGTNDDWIQTEYTEIKATIDAE  238
            VPALLL++G+LF+PESPR+LVE  + +EA  +L +L      D  +      ++A  +AE
Sbjct  179  VPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQEAE  238

Query  239  KAVMAPGWLIMFQVPQWRTRLMHGVAVQVFTQFTGVNVIGYYQTIMYESLGITGNR-ATL  297
            KA     W  +F     R RL+ GV +Q+F Q TG+N I YY T ++E+LG++ +   T+
Sbjct  239  KA----SWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTI  294

Query  298  VAGIYNCVGPIANLIFIIFILDRVGRRRPMMFGAIGISIALI---CEAALNSQNEDGSRH  354
            + G+ N V         IF++DR GRR  ++ GA G++I  +     A L     D    
Sbjct  295  IVGVVNFVFTFIA----IFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSD----  346

Query  355  GYSIGGVVFLFCVTIIFSLSFGPCSWVYMSEVMPMQIRGKGNAFATGIGNWAVATLWAQV  414
               I  +VF+      F++ +GP  WV +SE+ P+ +R K  A AT   NW    L   +
Sbjct  347  WAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAA-NWLANFLIGFL  405

Query  415  SPIALGKLGWKFYFVFVAWNICITLPVIYFCFKETKQKSLEEIDLLF  461
             PI    +G  + F   A  + + +  ++F   ETK ++LEEID LF
Sbjct  406  FPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 74.4 bits (183),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 132/364 (36%), Gaps = 52/364 (14%)

Query  45   TSAIIGAINSTFNGGAAIGALQGGLTMDRFGRKFTIQMGALICLVGAILQASAMNLAMIL  104
            +   IG + + F+ G A+     G   DRFGR+  + +G L+  +G +L   A +L ++L
Sbjct  30   SPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLL  89

Query  105  VGRILAGWAVGLMSMSVPVYQAECAHPRSRGLIVGLAQQMIGVGFIVSTWVGYGSLHAPD  164
            V R+L G   G +  +     A+   P  RG  +GL     G+G  +   +G G L    
Sbjct  90   VLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLG-GLL----  144

Query  165  TSSFQWRFPLAFQAVPALLLVVGMLFMPESPRYLVETEKYDEAMRILKRLHYDGTNDDWI  224
             S F WR      A+ +LL  V +L     P                             
Sbjct  145  ASLFGWRAAFLILAILSLLAAVLLLLPRPPPE----------------------------  176

Query  225  QTEYTEIKATIDAEKAVMAPGWLIMFQVPQWRTRLMHGVAVQVFTQFTGVNVIGYYQTIM  284
                          K        ++          +  + + +         +  Y  + 
Sbjct  177  ----------SKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLY  226

Query  285  YESLGITGNRATLVAGIYNCVGPIANLIFIIFILDRVGRRRPMMFGAIGISIALICEAAL  344
             E LG++   A L+ G+   +G     + +  + DR+GRRR ++   + + +A +    L
Sbjct  227  QEVLGLSALLAGLLLGLGGLLG-AIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLL  285

Query  345  NSQNEDGSRHGYSIGGVVFLFCVTIIFSLSFGPCSWVYMSEVMPMQIRGKGNAFATGIGN  404
            +           S+  ++ L  +   F L F P     +S++ P + RG  +      G+
Sbjct  286  SLT-------LSSLWLLLALLLLGFGFGLVF-PALNALVSDLAPKEERGTASGLYNTAGS  337

Query  405  WAVA  408
               A
Sbjct  338  LGGA  341



Lambda      K        H        a         alpha
   0.326    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 605626400


Query= TCONS_00022760

Length=347


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00022761

Length=444


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00022762

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00022763

Length=692


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 883399210


Query= TCONS_00022764

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00022765

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.145    0.514    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00022766

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.145    0.514    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00027314

Length=194
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase          90.8    3e-22


>CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase.  
Length=404

 Score = 90.8 bits (226),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 21/168 (13%)

Query  16   CFTIDNVLILPVTRICEVDHLCFSQTLEIQKYINKPGTWAALGVPEAVRNFSIESTEVAS  75
                 N+     T  C   +  +  +   +KY+N+P    AL V ++V  +   + +V +
Sbjct  240  GINPYNIYTPCSTDTCG-GYDPYDTSY-AEKYLNRPEVRKALHVNDSVGKWEECNDDVFN  297

Query  76   AFETTTDLYSNVMKDIKYTLEHGVDVLIYNGNLDLACNTAGNLRWAEALRWNGQAPFTSE  135
                  D+  +++  +   LE G+ VLIY+G++DL CN  G   W +AL W+G+  F   
Sbjct  298  W--LYDDIMKSMIPIVPNLLEGGLRVLIYSGDVDLICNYLGTEAWIKALNWSGKDDFR--  353

Query  136  KLKPWYSNVRGSRVKAGSFKEVFASIPNGVSGKQRFAFVTVDKSGHMV  183
               PW  +    +V AG + + + +            F TV  +GHMV
Sbjct  354  ---PWMVSPVDGQV-AG-YVKTYGN----------LTFATVKGAGHMV  386



Lambda      K        H        a         alpha
   0.320    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00027315

Length=194
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase          90.8    3e-22


>CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase.  
Length=404

 Score = 90.8 bits (226),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 21/168 (13%)

Query  16   CFTIDNVLILPVTRICEVDHLCFSQTLEIQKYINKPGTWAALGVPEAVRNFSIESTEVAS  75
                 N+     T  C   +  +  +   +KY+N+P    AL V ++V  +   + +V +
Sbjct  240  GINPYNIYTPCSTDTCG-GYDPYDTSY-AEKYLNRPEVRKALHVNDSVGKWEECNDDVFN  297

Query  76   AFETTTDLYSNVMKDIKYTLEHGVDVLIYNGNLDLACNTAGNLRWAEALRWNGQAPFTSE  135
                  D+  +++  +   LE G+ VLIY+G++DL CN  G   W +AL W+G+  F   
Sbjct  298  W--LYDDIMKSMIPIVPNLLEGGLRVLIYSGDVDLICNYLGTEAWIKALNWSGKDDFR--  353

Query  136  KLKPWYSNVRGSRVKAGSFKEVFASIPNGVSGKQRFAFVTVDKSGHMV  183
               PW  +    +V AG + + + +            F TV  +GHMV
Sbjct  354  ---PWMVSPVDGQV-AG-YVKTYGN----------LTFATVKGAGHMV  386



Lambda      K        H        a         alpha
   0.320    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00022767

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.143    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00022768

Length=1433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  116     1e-30
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  68.4    9e-13


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 116 bits (293),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 46/150 (31%), Positives = 73/150 (49%), Gaps = 6/150 (4%)

Query  1203  LKGVNYRANAGQRTAIVGRTGSGKTSLALSLLRLTTRTRGSISIDGVDIEAVPVEKLRQS  1262
             LK V+   N G+  A+VG  G+GK++L   +  L + T G+I +DG D+     + LR+ 
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1263  ISFIPQDPTLLDG-TIRFNLDFNGEYAEGYLQSILDDVAGTRKW-----KLDDTVELNGR  1316
             I ++ QDP L    T+R NL           +          +        D  V     
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGERPG  120

Query  1317  NFSQGERQLITLARAMVSKHKILIIDEGTA  1346
               S G+RQ + +ARA+++K K+L++DE TA
Sbjct  121   TLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 86.2 bits (214),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 72/147 (49%), Gaps = 14/147 (10%)

Query  565  RLDVKFARGGLNVITGDTGSGKTSLLHSLLLGVSANQGIIGLSKAQFEP---------IA  615
             + +    G +  + G  G+GK++LL  +   +S  +G I L                I 
Sbjct  3    NVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIG  62

Query  616  YASQEAWLFRG-SIKDNIVFGTAYDQKRYERVIRDCALEKDLAAFKDGDLKE--VGEGGR  672
            Y  Q+  LF   ++++N+  G    +   +R  +D   E+ L     GDL +  VGE   
Sbjct  63   YVFQDPQLFPRLTVRENLRLG-LLLKGLSKR-EKDARAEEALEKLGLGDLADRPVGERPG  120

Query  673  SLSGGQRQRVSLARAMYTNANVVILDD  699
            +LSGGQRQRV++ARA+ T   +++LD+
Sbjct  121  TLSGGQRQRVAIARALLTKPKLLLLDE  147


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 68.4 bits (168),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 95/287 (33%), Gaps = 28/287 (10%)

Query  850   VTLAVISTVGAQALEIGLPAWLSMWSAISVRNEGEGRDGFYLGFYAGISSPSDRVRRQML  909
             + LA++  + + A+    P  L                   L        P  +      
Sbjct  1     LILAILLAILSGAISPAFPLVLGRI----------------LDVLLPDGDPETQALNVYS  44

Query  910   TARAGLGSAQ-IAILAVSLLLLYSGAWRSSRDKHMEMISAIFGTTYTWIWSTQVGEVINR  968
              A   LG AQ I     S LL ++G  R SR    ++   I     ++  +  VGE+++R
Sbjct  45    LALLLLGLAQFILSFLQSYLLNHTGE-RLSRRLRRKLFKKILRQPMSFFDTNSVGELLSR  103

Query  969   FSSDIASLDDTLFRTFRPVLETWLAIGLRILTVTSLIPLFFLPSVVLCGFA---IYVGYQ  1025
              ++D + + D L                 I+    ++  ++   + L   A   +Y+   
Sbjct  104   LTNDTSKIRDGLGEKLG----LLFQSLATIVGGIIVM-FYYGWKLTLVLLAVLPLYILVS  158

Query  1026  YSFAA--TAVKHLYAASLTPLHHSIAETASGLKTIHAFRAQAMLQKRFNAALEHHVQAWN  1083
               FA     +      ++        E+ SG++T+ AF  +    ++++ ALE  ++A  
Sbjct  159   AVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGI  218

Query  1084  AVSDLQRWLAVRMDIFVALISCSAATLAVLRPHSSAPVVGLSLTLTT  1130
               +               L    A         S    VG  +   +
Sbjct  219   KKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVAFLS  265



Lambda      K        H        a         alpha
   0.322    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1837761000


Query= TCONS_00027316

Length=746
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  116     7e-31
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  71.5    4e-14


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 116 bits (293),  Expect = 7e-31, Method: Composition-based stats.
 Identities = 46/150 (31%), Positives = 73/150 (49%), Gaps = 6/150 (4%)

Query  516  LKGVNYRANAGQRTAIVGRTGSGKTSLALSLLRLTTRTRGSISIDGVDIEAVPVEKLRQS  575
            LK V+   N G+  A+VG  G+GK++L   +  L + T G+I +DG D+     + LR+ 
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  576  ISFIPQDPTLLDG-TIRFNLDFNGEYAEGYLQSILDDVAGTRKW-----KLDDTVELNGR  629
            I ++ QDP L    T+R NL           +          +        D  V     
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGERPG  120

Query  630  NFSQGERQLITLARAMVSKHKILIIDEGTA  659
              S G+RQ + +ARA+++K K+L++DE TA
Sbjct  121  TLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 71.5 bits (176),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 95/287 (33%), Gaps = 28/287 (10%)

Query  163  VTLAVISTVGAQALEIGLPAWLSMWSAISVRNEGEGRDGFYLGFYAGISSPSDRVRRQML  222
            + LA++  + + A+    P  L                   L        P  +      
Sbjct  1    LILAILLAILSGAISPAFPLVLGRI----------------LDVLLPDGDPETQALNVYS  44

Query  223  TARAGLGSAQ-IAILAVSLLLLYSGAWRSSRDKHMEMISAIFGTTYTWIWSTQVGEVINR  281
             A   LG AQ I     S LL ++G  R SR    ++   I     ++  +  VGE+++R
Sbjct  45   LALLLLGLAQFILSFLQSYLLNHTGE-RLSRRLRRKLFKKILRQPMSFFDTNSVGELLSR  103

Query  282  FSSDIASLDDTLFRTFRPVLETWLAIGLRILTVTSLIPLFFLPSVVLCGFA---IYVGYQ  338
             ++D + + D L                 I+    ++  ++   + L   A   +Y+   
Sbjct  104  LTNDTSKIRDGLGEKLG----LLFQSLATIVGGIIVM-FYYGWKLTLVLLAVLPLYILVS  158

Query  339  YSFAA--TAVKHLYAASLTPLHHSIAETASGLKTIHAFRAQAMLQKRFNAALEHHVQAWN  396
              FA     +      ++        E+ SG++T+ AF  +    ++++ ALE  ++A  
Sbjct  159  AVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGI  218

Query  397  AVSDLQRWLAVRMDIFVALISCSAATLAVLRPHSSAPVVGLSLTLTT  443
              +               L    A         S    VG  +   +
Sbjct  219  KKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVAFLS  265



Lambda      K        H        a         alpha
   0.320    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 948759104


Query= TCONS_00022770

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalyt...  77.7    5e-18


>CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain. 
 Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary 
fold is highly similar to that of tyrosine-specific phosphatases, 
except for a "recognition" region.
Length=127

 Score = 77.7 bits (192),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (45%), Gaps = 5/85 (6%)

Query  87   IDMIFEDGTCPPLPLVRRFIKMAHEMITVKNKGIAVHCKAGLGRTGCLIGAYLIYRYGFT  146
            ++   E      L     FI  A +    K   + VHC+AG+ R+  LI AYL+     +
Sbjct  43   VEDNHETNISKYLEEAVEFIDDARQ----KGGKVLVHCQAGISRSATLIIAYLMKTRNLS  98

Query  147  ANEIIAFMRFMRPGMVVGP-QQHWL  170
             NE  +F++  RPG+      +  L
Sbjct  99   LNEAYSFVKERRPGISPNFGFKRQL  123



Lambda      K        H        a         alpha
   0.315    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00027317

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalyt...  77.7    5e-18


>CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain. 
 Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary 
fold is highly similar to that of tyrosine-specific phosphatases, 
except for a "recognition" region.
Length=127

 Score = 77.7 bits (192),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (45%), Gaps = 5/85 (6%)

Query  87   IDMIFEDGTCPPLPLVRRFIKMAHEMITVKNKGIAVHCKAGLGRTGCLIGAYLIYRYGFT  146
            ++   E      L     FI  A +    K   + VHC+AG+ R+  LI AYL+     +
Sbjct  43   VEDNHETNISKYLEEAVEFIDDARQ----KGGKVLVHCQAGISRSATLIIAYLMKTRNLS  98

Query  147  ANEIIAFMRFMRPGMVVGP-QQHWL  170
             NE  +F++  RPG+      +  L
Sbjct  99   LNEAYSFVKERRPGISPNFGFKRQL  123



Lambda      K        H        a         alpha
   0.315    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00022769

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalyt...  77.7    5e-18


>CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain. 
 Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary 
fold is highly similar to that of tyrosine-specific phosphatases, 
except for a "recognition" region.
Length=127

 Score = 77.7 bits (192),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (45%), Gaps = 5/85 (6%)

Query  87   IDMIFEDGTCPPLPLVRRFIKMAHEMITVKNKGIAVHCKAGLGRTGCLIGAYLIYRYGFT  146
            ++   E      L     FI  A +    K   + VHC+AG+ R+  LI AYL+     +
Sbjct  43   VEDNHETNISKYLEEAVEFIDDARQ----KGGKVLVHCQAGISRSATLIIAYLMKTRNLS  98

Query  147  ANEIIAFMRFMRPGMVVGP-QQHWL  170
             NE  +F++  RPG+      +  L
Sbjct  99   LNEAYSFVKERRPGISPNFGFKRQL  123



Lambda      K        H        a         alpha
   0.315    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00022771

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalyt...  77.7    5e-18


>CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain. 
 Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary 
fold is highly similar to that of tyrosine-specific phosphatases, 
except for a "recognition" region.
Length=127

 Score = 77.7 bits (192),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (45%), Gaps = 5/85 (6%)

Query  87   IDMIFEDGTCPPLPLVRRFIKMAHEMITVKNKGIAVHCKAGLGRTGCLIGAYLIYRYGFT  146
            ++   E      L     FI  A +    K   + VHC+AG+ R+  LI AYL+     +
Sbjct  43   VEDNHETNISKYLEEAVEFIDDARQ----KGGKVLVHCQAGISRSATLIIAYLMKTRNLS  98

Query  147  ANEIIAFMRFMRPGMVVGP-QQHWL  170
             NE  +F++  RPG+      +  L
Sbjct  99   LNEAYSFVKERRPGISPNFGFKRQL  123



Lambda      K        H        a         alpha
   0.315    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00027318

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalyt...  77.7    5e-18


>CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain. 
 Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary 
fold is highly similar to that of tyrosine-specific phosphatases, 
except for a "recognition" region.
Length=127

 Score = 77.7 bits (192),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (45%), Gaps = 5/85 (6%)

Query  87   IDMIFEDGTCPPLPLVRRFIKMAHEMITVKNKGIAVHCKAGLGRTGCLIGAYLIYRYGFT  146
            ++   E      L     FI  A +    K   + VHC+AG+ R+  LI AYL+     +
Sbjct  43   VEDNHETNISKYLEEAVEFIDDARQ----KGGKVLVHCQAGISRSATLIIAYLMKTRNLS  98

Query  147  ANEIIAFMRFMRPGMVVGP-QQHWL  170
             NE  +F++  RPG+      +  L
Sbjct  99   LNEAYSFVKERRPGISPNFGFKRQL  123



Lambda      K        H        a         alpha
   0.315    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00027319

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalyt...  77.7    5e-18


>CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain. 
 Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary 
fold is highly similar to that of tyrosine-specific phosphatases, 
except for a "recognition" region.
Length=127

 Score = 77.7 bits (192),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (45%), Gaps = 5/85 (6%)

Query  87   IDMIFEDGTCPPLPLVRRFIKMAHEMITVKNKGIAVHCKAGLGRTGCLIGAYLIYRYGFT  146
            ++   E      L     FI  A +    K   + VHC+AG+ R+  LI AYL+     +
Sbjct  43   VEDNHETNISKYLEEAVEFIDDARQ----KGGKVLVHCQAGISRSATLIIAYLMKTRNLS  98

Query  147  ANEIIAFMRFMRPGMVVGP-QQHWL  170
             NE  +F++  RPG+      +  L
Sbjct  99   LNEAYSFVKERRPGISPNFGFKRQL  123



Lambda      K        H        a         alpha
   0.315    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00022772

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalyt...  77.7    5e-18


>CDD:395632 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain. 
 Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary 
fold is highly similar to that of tyrosine-specific phosphatases, 
except for a "recognition" region.
Length=127

 Score = 77.7 bits (192),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (45%), Gaps = 5/85 (6%)

Query  87   IDMIFEDGTCPPLPLVRRFIKMAHEMITVKNKGIAVHCKAGLGRTGCLIGAYLIYRYGFT  146
            ++   E      L     FI  A +    K   + VHC+AG+ R+  LI AYL+     +
Sbjct  43   VEDNHETNISKYLEEAVEFIDDARQ----KGGKVLVHCQAGISRSATLIIAYLMKTRNLS  98

Query  147  ANEIIAFMRFMRPGMVVGP-QQHWL  170
             NE  +F++  RPG+      +  L
Sbjct  99   LNEAYSFVKERRPGISPNFGFKRQL  123



Lambda      K        H        a         alpha
   0.315    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 498622782


Query= TCONS_00022774

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00022775

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00022776

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00022777

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00022778

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00027321

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00027323

Length=208


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00027322

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00027324

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.125    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0944    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00027325

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00027326

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.125    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00022779

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00022780

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00022781

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00027327

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00027328

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462764 pfam09341, Pcc1, Transcription factor Pcc1. Pcc1 is a ...  68.7    2e-17


>CDD:462764 pfam09341, Pcc1, Transcription factor Pcc1.  Pcc1 is a transcription 
factor that functions in regulating genes involved in 
cell cycle progression and polarized growth.
Length=75

 Score = 68.7 bits (169),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 29/89 (33%), Positives = 40/89 (45%), Gaps = 16/89 (18%)

Query  14  SLTISLPLPNNRLASSALQALEVDAELSPF--VRRSFALKSPVQSSTADEDEPAKTVLET  71
           +LT+ +P P  R A  A ++L  D E SP   VRR  ++                  L  
Sbjct  1   TLTLEIPFPTEREAEIAYRSLAPDLEPSPDLRVRRELSVDGNT--------------LVV  46

Query  72  TYRATTNRMLRVAVNGFMESLGVVLGVME  100
           T  AT  R LR +VN F++ L +V   ME
Sbjct  47  TIEATDLRSLRASVNSFLDLLKLVEETME  75



Lambda      K        H        a         alpha
   0.311    0.127    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00022783

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395197 pfam00255, GSHPx, Glutathione peroxidase                   167     6e-54


>CDD:395197 pfam00255, GSHPx, Glutathione peroxidase.  
Length=108

 Score = 167 bits (424),  Expect = 6e-54, Method: Composition-based stats.
 Identities = 58/111 (52%), Positives = 73/111 (66%), Gaps = 3/111 (3%)

Query  51   FYDFKPADKKGEPFDLASLKGKVVLVVNTASKCGFTPQFKGLENLYQSIKAKHPEDFTIL  110
             Y+F   D  GEP      +GKVVL+VN ASKCG TPQ+  LE L +  K        IL
Sbjct  1    IYEFSAKDIDGEPVPFDQYRGKVVLIVNVASKCGLTPQYTQLEELQERYK---DRGLVIL  57

Query  111  GFPCNQFGSQDPGSNDEIQSFCQVNYGVTFPVLGKLDVNGDNAAPVWTWMK  161
            GFPCNQFG Q+PGSN+EI+ FC   YGVTFP+  K++VNG+ A PV+ ++K
Sbjct  58   GFPCNQFGKQEPGSNEEIKYFCPGGYGVTFPLFSKIEVNGEKAHPVYKFLK  108



Lambda      K        H        a         alpha
   0.316    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00027329

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00022784

Length=124
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460321 pfam01776, Ribosomal_L22e, Ribosomal L22e protein family   142     4e-46


>CDD:460321 pfam01776, Ribosomal_L22e, Ribosomal L22e protein family.  
Length=100

 Score = 142 bits (361),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 65/100 (65%), Positives = 78/100 (78%), Gaps = 0/100 (0%)

Query  18   YIINASQPASDKIFDVSAFEKFLHDRIKVEGRVGNLGDNVVISQVGEGKIEVVTHIPFSG  77
            + I+ S P  D IFD + FEKFL +RIKV G+ GNLGDNV IS+ G+ KI V + IPFS 
Sbjct  1    FTIDCSHPVEDGIFDPADFEKFLQERIKVNGKTGNLGDNVTISRKGKNKITVTSEIPFSK  60

Query  78   RYLKYLTKKYLKKQQLRDWLRVVSTSKGVYELRFYNVVND  117
            RYLKYLTKKYLKK QLRDWLRVV+TSK  YELR++N+ +D
Sbjct  61   RYLKYLTKKYLKKNQLRDWLRVVATSKDTYELRYFNINDD  100



Lambda      K        H        a         alpha
   0.316    0.135    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00027330

Length=645


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 814084080


Query= TCONS_00022785

Length=645


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 814084080


Query= TCONS_00022786

Length=117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460321 pfam01776, Ribosomal_L22e, Ribosomal L22e protein family   144     8e-47


>CDD:460321 pfam01776, Ribosomal_L22e, Ribosomal L22e protein family.  
Length=100

 Score = 144 bits (365),  Expect = 8e-47, Method: Composition-based stats.
 Identities = 65/100 (65%), Positives = 78/100 (78%), Gaps = 0/100 (0%)

Query  11   YIINASQPASDKIFDVSAFEKFLHDRIKVEGRVGNLGDNVVISQVGEGKIEVVTHIPFSG  70
            + I+ S P  D IFD + FEKFL +RIKV G+ GNLGDNV IS+ G+ KI V + IPFS 
Sbjct  1    FTIDCSHPVEDGIFDPADFEKFLQERIKVNGKTGNLGDNVTISRKGKNKITVTSEIPFSK  60

Query  71   RYLKYLTKKYLKKQQLRDWLRVVSTSKGVYELRFYNVVND  110
            RYLKYLTKKYLKK QLRDWLRVV+TSK  YELR++N+ +D
Sbjct  61   RYLKYLTKKYLKKNQLRDWLRVVATSKDTYELRYFNINDD  100



Lambda      K        H        a         alpha
   0.317    0.138    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00022787

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00027332

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00022788

Length=403


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00022789

Length=597


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 754686140


Query= TCONS_00022792

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00022790

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00022794

Length=423


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00022791

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00022793

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459687 pfam00137, ATP-synt_C, ATP synthase subunit C              55.8    5e-12


>CDD:459687 pfam00137, ATP-synt_C, ATP synthase subunit C.  
Length=60

 Score = 55.8 bits (136),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 0/60 (0%)

Query  92   LGAGLAVGLAGMAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVALLM  151
            LGAGLAVGLA + +G   GI G A +   A+QP+L+  M++    AE L +YGL+VALL+
Sbjct  1    LGAGLAVGLAALGSGIGQGIAGAAAIEAIARQPKLFGKMLIGAALAEALAIYGLVVALLL  60



Lambda      K        H        a         alpha
   0.329    0.147    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00022795

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00022796

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00027334

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459687 pfam00137, ATP-synt_C, ATP synthase subunit C              55.8    5e-12


>CDD:459687 pfam00137, ATP-synt_C, ATP synthase subunit C.  
Length=60

 Score = 55.8 bits (136),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 0/60 (0%)

Query  92   LGAGLAVGLAGMAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVALLM  151
            LGAGLAVGLA + +G   GI G A +   A+QP+L+  M++    AE L +YGL+VALL+
Sbjct  1    LGAGLAVGLAALGSGIGQGIAGAAAIEAIARQPKLFGKMLIGAALAEALAIYGLVVALLL  60



Lambda      K        H        a         alpha
   0.329    0.147    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00027335

Length=423


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00027336

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00022797

Length=423


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00022798

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00027337

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459687 pfam00137, ATP-synt_C, ATP synthase subunit C              55.8    5e-12


>CDD:459687 pfam00137, ATP-synt_C, ATP synthase subunit C.  
Length=60

 Score = 55.8 bits (136),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 0/60 (0%)

Query  92   LGAGLAVGLAGMAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVALLM  151
            LGAGLAVGLA + +G   GI G A +   A+QP+L+  M++    AE L +YGL+VALL+
Sbjct  1    LGAGLAVGLAALGSGIGQGIAGAAAIEAIARQPKLFGKMLIGAALAEALAIYGLVVALLL  60



Lambda      K        H        a         alpha
   0.329    0.147    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00027338

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00027341

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00027340

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459687 pfam00137, ATP-synt_C, ATP synthase subunit C              55.4    7e-12


>CDD:459687 pfam00137, ATP-synt_C, ATP synthase subunit C.  
Length=60

 Score = 55.4 bits (135),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 0/60 (0%)

Query  92   LGAGLAVGLAGMAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVALLM  151
            LGAGLAVGLA + +G   GI G A +   A+QP+L+  M++    AE L +YGL+VALL+
Sbjct  1    LGAGLAVGLAALGSGIGQGIAGAAAIEAIARQPKLFGKMLIGAALAEALAIYGLVVALLL  60



Lambda      K        H        a         alpha
   0.329    0.146    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00027339

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459687 pfam00137, ATP-synt_C, ATP synthase subunit C              55.4    7e-12


>CDD:459687 pfam00137, ATP-synt_C, ATP synthase subunit C.  
Length=60

 Score = 55.4 bits (135),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 0/60 (0%)

Query  92   LGAGLAVGLAGMAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVALLM  151
            LGAGLAVGLA + +G   GI G A +   A+QP+L+  M++    AE L +YGL+VALL+
Sbjct  1    LGAGLAVGLAALGSGIGQGIAGAAAIEAIARQPKLFGKMLIGAALAEALAIYGLVVALLL  60



Lambda      K        H        a         alpha
   0.329    0.146    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00022800

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.145    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00022802

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459687 pfam00137, ATP-synt_C, ATP synthase subunit C              55.4    7e-12


>CDD:459687 pfam00137, ATP-synt_C, ATP synthase subunit C.  
Length=60

 Score = 55.4 bits (135),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 0/60 (0%)

Query  92   LGAGLAVGLAGMAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVALLM  151
            LGAGLAVGLA + +G   GI G A +   A+QP+L+  M++    AE L +YGL+VALL+
Sbjct  1    LGAGLAVGLAALGSGIGQGIAGAAAIEAIARQPKLFGKMLIGAALAEALAIYGLVVALLL  60



Lambda      K        H        a         alpha
   0.329    0.145    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0732    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00022803

Length=119
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459687 pfam00137, ATP-synt_C, ATP synthase subunit C              55.4    2e-12


>CDD:459687 pfam00137, ATP-synt_C, ATP synthase subunit C.  
Length=60

 Score = 55.4 bits (135),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 0/60 (0%)

Query  50   LGAGLAVGLAGMAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVALLM  109
            LGAGLAVGLA + +G   GI G A +   A+QP+L+  M++    AE L +YGL+VALL+
Sbjct  1    LGAGLAVGLAALGSGIGQGIAGAAAIEAIARQPKLFGKMLIGAALAEALAIYGLVVALLL  60



Lambda      K        H        a         alpha
   0.329    0.148    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00022804

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00027342

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00022805

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00022807

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00022808

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00022809

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13. Mammal...  179     2e-55
CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13. M13 ...  156     2e-44


>CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13.  Mammalian enzymes 
are typically type-II membrane anchored enzymes which 
are known, or believed to activate or inactivate oligopeptide 
(pro)-hormones such as opioid peptides. The family also contains 
a bacterial member believed to be involved with milk 
protein cleavage.
Length=205

 Score = 179 bits (455),  Expect = 2e-55, Method: Composition-based stats.
 Identities = 69/156 (44%), Positives = 93/156 (60%), Gaps = 5/156 (3%)

Query  227  NAYYNPPLQEIVFPTGIMQPPVFYGPSAPLYLAYGAFGAVSGHELSHAFDSTGRHYDQTG  286
            NAYY P   EIVFP  I+QPP F+ P+ P  + YG  G V  HE++H FD  G  +D+ G
Sbjct  1    NAYYQPNRNEIVFPAAILQPP-FFDPNYPRAVNYGGIGNVIAHEITHGFDDQGAQFDKDG  59

Query  287  NYTDWWDAKTVQGFEDRAQCFVDQYSNFTVLGENGEPLHVNGRLTLGENIADAGGIGAAF  346
            N   WW  +  + F+DRAQC ++QYS +T   +  +    NG LTLGENIAD GG+  A 
Sbjct  60   NLRSWWTDEDAEEFKDRAQCLIEQYSEYTPP-DGTK--CANGTLTLGENIADLGGLTIAL  116

Query  347  QAWKKRDEASPDAHLPGLSNFSKEQLFFIAYGNWWC  382
            +A+KK   ++ +  LPG  N + +QLFF      WC
Sbjct  117  RAYKKLL-SANETVLPGFENLTPDQLFFRGAAQIWC  151


>CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13.  M13 peptidases 
are well-studied proteases found in a wide range of organisms 
including mammals and bacteria. In mammals they participate 
in processes such as cardiovascular development, blood-pressure 
regulation, nervous control of respiration, and regulation 
of the function of neuropeptides in the central nervous 
system. In bacteria they may be used for digestion of 
milk.
Length=382

 Score = 156 bits (396),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 3/165 (2%)

Query  1    MLPQISLSTIVSMLSPAGFKPDRLIVSSPSYMESLSTILRDTPRKTVHHFFKWKIIQVYV  60
            + P I     ++         D +IVS P Y+++LS +L +TP +T+ ++  W++++   
Sbjct  221  LAPGIDWKAYLNAAGLPDVPSDEVIVSQPEYLKALSKLLAETPLRTLKNYLIWRLVRSLA  280

Query  61   DQIEDAKITALREFSNKLAGKDPKATTERWRTCIRSLDRGLSWSLSRFYVLDAFSEASKE  120
              + D    A  EF   L+G   +    RW+ C+  ++  L  +L R YV   F E +K 
Sbjct  281  PYLSDEFRDANFEFYGTLSGTKQR---PRWKRCVSLVNGLLGEALGRLYVKKYFPEEAKA  337

Query  121  LGDQIILDIKQRFVNILHQTSWMSPDVRKLSIEKVDNIVQKIGYP  165
              ++++ +IK+ F   L +  WM  + +K ++EK+D +  KIGYP
Sbjct  338  RVEELVENIKEAFRERLDELDWMDEETKKKALEKLDAMTVKIGYP  382



Lambda      K        H        a         alpha
   0.319    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00022813

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13. Mammal...  159     5e-48
CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13. M13 ...  156     9e-45


>CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13.  Mammalian enzymes 
are typically type-II membrane anchored enzymes which 
are known, or believed to activate or inactivate oligopeptide 
(pro)-hormones such as opioid peptides. The family also contains 
a bacterial member believed to be involved with milk 
protein cleavage.
Length=205

 Score = 159 bits (405),  Expect = 5e-48, Method: Composition-based stats.
 Identities = 63/143 (44%), Positives = 86/143 (60%), Gaps = 5/143 (3%)

Query  227  NAYYNPPLQEIVFPTGIMQPPVFYGPSAPLYLAYGAFGAVSGHELSHAFDSTGRHYDQTG  286
            NAYY P   EIVFP  I+QPP F+ P+ P  + YG  G V  HE++H FD  G  +D+ G
Sbjct  1    NAYYQPNRNEIVFPAAILQPP-FFDPNYPRAVNYGGIGNVIAHEITHGFDDQGAQFDKDG  59

Query  287  NYTDWWDAKTVQGFEDRAQCFVDQYSNFTVLGENGEPLHVNGRLTLGENIADAGGIGAAF  346
            N   WW  +  + F+DRAQC ++QYS +T   +  +    NG LTLGENIAD GG+  A 
Sbjct  60   NLRSWWTDEDAEEFKDRAQCLIEQYSEYTPP-DGTK--CANGTLTLGENIADLGGLTIAL  116

Query  347  QAWKKRDEASPDAHLPGLSNFSK  369
            +A+KK   ++ +  LPG  N + 
Sbjct  117  RAYKKLL-SANETVLPGFENLTP  138


>CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13.  M13 peptidases 
are well-studied proteases found in a wide range of organisms 
including mammals and bacteria. In mammals they participate 
in processes such as cardiovascular development, blood-pressure 
regulation, nervous control of respiration, and regulation 
of the function of neuropeptides in the central nervous 
system. In bacteria they may be used for digestion of 
milk.
Length=382

 Score = 156 bits (397),  Expect = 9e-45, Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 3/165 (2%)

Query  1    MLPQISLSTIVSMLSPAGFKPDRLIVSSPSYMESLSTILRDTPRKTVHHFFKWKIIQVYV  60
            + P I     ++         D +IVS P Y+++LS +L +TP +T+ ++  W++++   
Sbjct  221  LAPGIDWKAYLNAAGLPDVPSDEVIVSQPEYLKALSKLLAETPLRTLKNYLIWRLVRSLA  280

Query  61   DQIEDAKITALREFSNKLAGKDPKATTERWRTCIRSLDRGLSWSLSRFYVLDAFSEASKE  120
              + D    A  EF   L+G   +    RW+ C+  ++  L  +L R YV   F E +K 
Sbjct  281  PYLSDEFRDANFEFYGTLSGTKQR---PRWKRCVSLVNGLLGEALGRLYVKKYFPEEAKA  337

Query  121  LGDQIILDIKQRFVNILHQTSWMSPDVRKLSIEKVDNIVQKIGYP  165
              ++++ +IK+ F   L +  WM  + +K ++EK+D +  KIGYP
Sbjct  338  RVEELVENIKEAFRERLDELDWMDEETKKKALEKLDAMTVKIGYP  382



Lambda      K        H        a         alpha
   0.318    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00022810

Length=670
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13. M13 ...  334     1e-109
CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13. Mammal...  218     1e-67 


>CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13.  M13 peptidases 
are well-studied proteases found in a wide range of organisms 
including mammals and bacteria. In mammals they participate 
in processes such as cardiovascular development, blood-pressure 
regulation, nervous control of respiration, and regulation 
of the function of neuropeptides in the central nervous 
system. In bacteria they may be used for digestion of 
milk.
Length=382

 Score = 334 bits (858),  Expect = 1e-109, Method: Composition-based stats.
 Identities = 114/392 (29%), Positives = 199/392 (51%), Gaps = 17/392 (4%)

Query  19   PCEDFEQYVCGGWRERHDLRLDQGSMFTGTLMAEAAQMRLRHILESTSVPEAADEENLRK  78
            PC+DF QY CGGW + H +  D+ S  T   + E  + +LR ILE  +  E+ D   + K
Sbjct  1    PCDDFYQYACGGWLKNHPIPADKSSWGTFDELRERNEKQLREILEEAAASES-DPGAVEK  59

Query  79   LKSAYNACLDEAVISKRGSEPLDALLAQLDDIYSAESTAVGSDVNITDAVLFLMNSGVTA  138
             K  Y +C+D   I K G +PL  LL ++    + +        ++ + +  L   GV +
Sbjct  60   AKDLYKSCMDTDAIEKLGLKPLKPLLDEIGGPLANKDKF-----DLLETLAKLRRYGVDS  114

Query  139  LVEMGPGPDDRDPDKIVISVGPPDEIGLPVREYYN------SSQTVSEYTRVLKEVLGNF  192
            L   G GPDD++  + ++ +  P  +GLP R+YY       S++    Y   + ++L   
Sbjct  115  LFGFGVGPDDKNSSRNILYLDQP-GLGLPDRDYYLKDRDEKSAEIREAYKAYIAKLLTLL  173

Query  193  -VGQDKRVSVEDIVLFEWKLANATPDAQTLQDVEKYYNPRNLDQVESMLPQISLSTIVSM  251
               ++     E+++ FE KLA A+   +  +D EK YNP  L +++ + P I     ++ 
Sbjct  174  GASEEAAALAEEVLAFETKLAKASLSREERRDPEKTYNPMTLAELQKLAPGIDWKAYLNA  233

Query  252  LSPAGFKPDRLIVSSPSYMESLSTILRDTPRKTVHHFFKWKIIQVYVDQIEDAKITALRE  311
                    D +IVS P Y+++LS +L +TP +T+ ++  W++++     + D    A  E
Sbjct  234  AGLPDVPSDEVIVSQPEYLKALSKLLAETPLRTLKNYLIWRLVRSLAPYLSDEFRDANFE  293

Query  312  FSNKLAGKDPKATTERWRTCIRSLDRGLSWSLSRFYVLDAFSEASKELGDQIILDIKQRF  371
            F   L+G   +    RW+ C+  ++  L  +L R YV   F E +K   ++++ +IK+ F
Sbjct  294  FYGTLSGTKQR---PRWKRCVSLVNGLLGEALGRLYVKKYFPEEAKARVEELVENIKEAF  350

Query  372  VNILHQTSWMSPDVRKLSIEKVDNIVQKIGYP  403
               L +  WM  + +K ++EK+D +  KIGYP
Sbjct  351  RERLDELDWMDEETKKKALEKLDAMTVKIGYP  382


>CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13.  Mammalian enzymes 
are typically type-II membrane anchored enzymes which 
are known, or believed to activate or inactivate oligopeptide 
(pro)-hormones such as opioid peptides. The family also contains 
a bacterial member believed to be involved with milk 
protein cleavage.
Length=205

 Score = 218 bits (557),  Expect = 1e-67, Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 116/197 (59%), Gaps = 5/197 (3%)

Query  465  NAYYNPPLQEIVFPTGIMQPPVFYGPSAPLYLAYGAFGAVSGHELSHAFDSTGRHYDQTG  524
            NAYY P   EIVFP  I+QPP F+ P+ P  + YG  G V  HE++H FD  G  +D+ G
Sbjct  1    NAYYQPNRNEIVFPAAILQPP-FFDPNYPRAVNYGGIGNVIAHEITHGFDDQGAQFDKDG  59

Query  525  NYTDWWDAKTVQGFEDRAQCFVDQYSNFTVLGENGEPLHVNGRLTLGENIADAGGIGAAF  584
            N   WW  +  + F+DRAQC ++QYS +T   +  +    NG LTLGENIAD GG+  A 
Sbjct  60   NLRSWWTDEDAEEFKDRAQCLIEQYSEYTPP-DGTK--CANGTLTLGENIADLGGLTIAL  116

Query  585  QAWKKRDEASPDAHLPGLSNFSKEQLFFIAYGNWWCAKTTKEAAIQAIYTDPHAPKFARI  644
            +A+KK   ++ +  LPG  N + +QLFF      WC K +    ++ +  DPH+P   R+
Sbjct  117  RAYKKLL-SANETVLPGFENLTPDQLFFRGAAQIWCMKQSPAEVLRQLLVDPHSPPEFRV  175

Query  645  IGTMANSREFNEAFNCP  661
             G M+N   F EAFNCP
Sbjct  176  NGVMSNMPAFYEAFNCP  192



Lambda      K        H        a         alpha
   0.318    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 850953830


Query= TCONS_00022811

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13. M13 ...  155     1e-45
CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13. Mammal...  68.6    2e-14


>CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13.  M13 peptidases 
are well-studied proteases found in a wide range of organisms 
including mammals and bacteria. In mammals they participate 
in processes such as cardiovascular development, blood-pressure 
regulation, nervous control of respiration, and regulation 
of the function of neuropeptides in the central nervous 
system. In bacteria they may be used for digestion of 
milk.
Length=382

 Score = 155 bits (395),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 3/165 (2%)

Query  1    MLPQISLSTIVSMLSPAGFKPDRLIVSSPSYMESLSTILRDTPRKTVHHFFKWKIIQVYV  60
            + P I     ++         D +IVS P Y+++LS +L +TP +T+ ++  W++++   
Sbjct  221  LAPGIDWKAYLNAAGLPDVPSDEVIVSQPEYLKALSKLLAETPLRTLKNYLIWRLVRSLA  280

Query  61   DQIEDAKITALREFSNKLAGKDPKATTERWRTCIRSLDRGLSWSLSRFYVLDAFSEASKE  120
              + D    A  EF   L+G   +    RW+ C+  ++  L  +L R YV   F E +K 
Sbjct  281  PYLSDEFRDANFEFYGTLSGTKQR---PRWKRCVSLVNGLLGEALGRLYVKKYFPEEAKA  337

Query  121  LGDQIILDIKQRFVNILHQTSWMSPDVRKLSIEKVDNIVQKIGYP  165
              ++++ +IK+ F   L +  WM  + +K ++EK+D +  KIGYP
Sbjct  338  RVEELVENIKEAFRERLDELDWMDEETKKKALEKLDAMTVKIGYP  382


>CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13.  Mammalian enzymes 
are typically type-II membrane anchored enzymes which 
are known, or believed to activate or inactivate oligopeptide 
(pro)-hormones such as opioid peptides. The family also contains 
a bacterial member believed to be involved with milk 
protein cleavage.
Length=205

 Score = 68.6 bits (168),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 25/48 (52%), Positives = 31/48 (65%), Gaps = 1/48 (2%)

Query  227  NAYYNPPLQEIVFPTGIMQPPVFYGPSAPLYLAYGAFGAVSGHELSHG  274
            NAYY P   EIVFP  I+QPP F+ P+ P  + YG  G V  HE++HG
Sbjct  1    NAYYQPNRNEIVFPAAILQPP-FFDPNYPRAVNYGGIGNVIAHEITHG  47



Lambda      K        H        a         alpha
   0.319    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00022812

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13. M13 ...  155     1e-45
CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13. Mammal...  68.6    2e-14


>CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13.  M13 peptidases 
are well-studied proteases found in a wide range of organisms 
including mammals and bacteria. In mammals they participate 
in processes such as cardiovascular development, blood-pressure 
regulation, nervous control of respiration, and regulation 
of the function of neuropeptides in the central nervous 
system. In bacteria they may be used for digestion of 
milk.
Length=382

 Score = 155 bits (395),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 3/165 (2%)

Query  1    MLPQISLSTIVSMLSPAGFKPDRLIVSSPSYMESLSTILRDTPRKTVHHFFKWKIIQVYV  60
            + P I     ++         D +IVS P Y+++LS +L +TP +T+ ++  W++++   
Sbjct  221  LAPGIDWKAYLNAAGLPDVPSDEVIVSQPEYLKALSKLLAETPLRTLKNYLIWRLVRSLA  280

Query  61   DQIEDAKITALREFSNKLAGKDPKATTERWRTCIRSLDRGLSWSLSRFYVLDAFSEASKE  120
              + D    A  EF   L+G   +    RW+ C+  ++  L  +L R YV   F E +K 
Sbjct  281  PYLSDEFRDANFEFYGTLSGTKQR---PRWKRCVSLVNGLLGEALGRLYVKKYFPEEAKA  337

Query  121  LGDQIILDIKQRFVNILHQTSWMSPDVRKLSIEKVDNIVQKIGYP  165
              ++++ +IK+ F   L +  WM  + +K ++EK+D +  KIGYP
Sbjct  338  RVEELVENIKEAFRERLDELDWMDEETKKKALEKLDAMTVKIGYP  382


>CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13.  Mammalian enzymes 
are typically type-II membrane anchored enzymes which 
are known, or believed to activate or inactivate oligopeptide 
(pro)-hormones such as opioid peptides. The family also contains 
a bacterial member believed to be involved with milk 
protein cleavage.
Length=205

 Score = 68.6 bits (168),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 25/48 (52%), Positives = 31/48 (65%), Gaps = 1/48 (2%)

Query  227  NAYYNPPLQEIVFPTGIMQPPVFYGPSAPLYLAYGAFGAVSGHELSHG  274
            NAYY P   EIVFP  I+QPP F+ P+ P  + YG  G V  HE++HG
Sbjct  1    NAYYQPNRNEIVFPAAILQPP-FFDPNYPRAVNYGGIGNVIAHEITHG  47



Lambda      K        H        a         alpha
   0.319    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00022815

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13. M13 ...  209     2e-66


>CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13.  M13 peptidases 
are well-studied proteases found in a wide range of organisms 
including mammals and bacteria. In mammals they participate 
in processes such as cardiovascular development, blood-pressure 
regulation, nervous control of respiration, and regulation 
of the function of neuropeptides in the central nervous 
system. In bacteria they may be used for digestion of 
milk.
Length=382

 Score = 209 bits (534),  Expect = 2e-66, Method: Composition-based stats.
 Identities = 76/262 (29%), Positives = 129/262 (49%), Gaps = 14/262 (5%)

Query  19   PCEDFEQYVCGGWRERHDLRLDQGSMFTGTLMAEAAQMRLRHILESTSVPEAADEENLRK  78
            PC+DF QY CGGW + H +  D+ S  T   + E  + +LR ILE  +  E+ D   + K
Sbjct  1    PCDDFYQYACGGWLKNHPIPADKSSWGTFDELRERNEKQLREILEEAAASES-DPGAVEK  59

Query  79   LKSAYNACLDEAVISKRGSEPLDALLAQLDDIYSAESTAVGSDVNITDAVLFLMNSGVTA  138
             K  Y +C+D   I K G +PL  LL ++    + +        ++ + +  L   GV +
Sbjct  60   AKDLYKSCMDTDAIEKLGLKPLKPLLDEIGGPLANKDKF-----DLLETLAKLRRYGVDS  114

Query  139  LVEMGPGPDDRDPDKIVISVGPPDEIGLPVREYYN------SSQTVSEYTRVLKEVLGNF  192
            L   G GPDD++  + ++ +  P  +GLP R+YY       S++    Y   + ++L   
Sbjct  115  LFGFGVGPDDKNSSRNILYLDQP-GLGLPDRDYYLKDRDEKSAEIREAYKAYIAKLLTLL  173

Query  193  -VGQDKRVSVEDIVLFEWKLANATPDAQTLQDVEKYYNPRNLDQVESMLPQISLSTIVSM  251
               ++     E+++ FE KLA A+   +  +D EK YNP  L +++ + P I     ++ 
Sbjct  174  GASEEAAALAEEVLAFETKLAKASLSREERRDPEKTYNPMTLAELQKLAPGIDWKAYLNA  233

Query  252  LSPAGFKPDRLIVSSPSYMESL  273
                    D +IVS P Y+++L
Sbjct  234  AGLPDVPSDEVIVSQPEYLKAL  255



Lambda      K        H        a         alpha
   0.315    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00027344

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13. Mammal...  159     5e-48
CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13. M13 ...  156     9e-45


>CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13.  Mammalian enzymes 
are typically type-II membrane anchored enzymes which 
are known, or believed to activate or inactivate oligopeptide 
(pro)-hormones such as opioid peptides. The family also contains 
a bacterial member believed to be involved with milk 
protein cleavage.
Length=205

 Score = 159 bits (405),  Expect = 5e-48, Method: Composition-based stats.
 Identities = 63/143 (44%), Positives = 86/143 (60%), Gaps = 5/143 (3%)

Query  227  NAYYNPPLQEIVFPTGIMQPPVFYGPSAPLYLAYGAFGAVSGHELSHAFDSTGRHYDQTG  286
            NAYY P   EIVFP  I+QPP F+ P+ P  + YG  G V  HE++H FD  G  +D+ G
Sbjct  1    NAYYQPNRNEIVFPAAILQPP-FFDPNYPRAVNYGGIGNVIAHEITHGFDDQGAQFDKDG  59

Query  287  NYTDWWDAKTVQGFEDRAQCFVDQYSNFTVLGENGEPLHVNGRLTLGENIADAGGIGAAF  346
            N   WW  +  + F+DRAQC ++QYS +T   +  +    NG LTLGENIAD GG+  A 
Sbjct  60   NLRSWWTDEDAEEFKDRAQCLIEQYSEYTPP-DGTK--CANGTLTLGENIADLGGLTIAL  116

Query  347  QAWKKRDEASPDAHLPGLSNFSK  369
            +A+KK   ++ +  LPG  N + 
Sbjct  117  RAYKKLL-SANETVLPGFENLTP  138


>CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13.  M13 peptidases 
are well-studied proteases found in a wide range of organisms 
including mammals and bacteria. In mammals they participate 
in processes such as cardiovascular development, blood-pressure 
regulation, nervous control of respiration, and regulation 
of the function of neuropeptides in the central nervous 
system. In bacteria they may be used for digestion of 
milk.
Length=382

 Score = 156 bits (397),  Expect = 9e-45, Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 3/165 (2%)

Query  1    MLPQISLSTIVSMLSPAGFKPDRLIVSSPSYMESLSTILRDTPRKTVHHFFKWKIIQVYV  60
            + P I     ++         D +IVS P Y+++LS +L +TP +T+ ++  W++++   
Sbjct  221  LAPGIDWKAYLNAAGLPDVPSDEVIVSQPEYLKALSKLLAETPLRTLKNYLIWRLVRSLA  280

Query  61   DQIEDAKITALREFSNKLAGKDPKATTERWRTCIRSLDRGLSWSLSRFYVLDAFSEASKE  120
              + D    A  EF   L+G   +    RW+ C+  ++  L  +L R YV   F E +K 
Sbjct  281  PYLSDEFRDANFEFYGTLSGTKQR---PRWKRCVSLVNGLLGEALGRLYVKKYFPEEAKA  337

Query  121  LGDQIILDIKQRFVNILHQTSWMSPDVRKLSIEKVDNIVQKIGYP  165
              ++++ +IK+ F   L +  WM  + +K ++EK+D +  KIGYP
Sbjct  338  RVEELVENIKEAFRERLDELDWMDEETKKKALEKLDAMTVKIGYP  382



Lambda      K        H        a         alpha
   0.318    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00022814

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13. Mammal...  216     3e-69
CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13. M13 ...  156     4e-44


>CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13.  Mammalian enzymes 
are typically type-II membrane anchored enzymes which 
are known, or believed to activate or inactivate oligopeptide 
(pro)-hormones such as opioid peptides. The family also contains 
a bacterial member believed to be involved with milk 
protein cleavage.
Length=205

 Score = 216 bits (552),  Expect = 3e-69, Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 116/197 (59%), Gaps = 5/197 (3%)

Query  227  NAYYNPPLQEIVFPTGIMQPPVFYGPSAPLYLAYGAFGAVSGHELSHAFDSTGRHYDQTG  286
            NAYY P   EIVFP  I+QPP F+ P+ P  + YG  G V  HE++H FD  G  +D+ G
Sbjct  1    NAYYQPNRNEIVFPAAILQPP-FFDPNYPRAVNYGGIGNVIAHEITHGFDDQGAQFDKDG  59

Query  287  NYTDWWDAKTVQGFEDRAQCFVDQYSNFTVLGENGEPLHVNGRLTLGENIADAGGIGAAF  346
            N   WW  +  + F+DRAQC ++QYS +T   +  +    NG LTLGENIAD GG+  A 
Sbjct  60   NLRSWWTDEDAEEFKDRAQCLIEQYSEYTPP-DGTK--CANGTLTLGENIADLGGLTIAL  116

Query  347  QAWKKRDEASPDAHLPGLSNFSKEQLFFIAYGNWWCAKTTKEAAIQAIYTDPHAPKFARI  406
            +A+KK   ++ +  LPG  N + +QLFF      WC K +    ++ +  DPH+P   R+
Sbjct  117  RAYKKLL-SANETVLPGFENLTPDQLFFRGAAQIWCMKQSPAEVLRQLLVDPHSPPEFRV  175

Query  407  IGTMANSREFNEAFNCP  423
             G M+N   F EAFNCP
Sbjct  176  NGVMSNMPAFYEAFNCP  192


>CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13.  M13 peptidases 
are well-studied proteases found in a wide range of organisms 
including mammals and bacteria. In mammals they participate 
in processes such as cardiovascular development, blood-pressure 
regulation, nervous control of respiration, and regulation 
of the function of neuropeptides in the central nervous 
system. In bacteria they may be used for digestion of 
milk.
Length=382

 Score = 156 bits (396),  Expect = 4e-44, Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 3/165 (2%)

Query  1    MLPQISLSTIVSMLSPAGFKPDRLIVSSPSYMESLSTILRDTPRKTVHHFFKWKIIQVYV  60
            + P I     ++         D +IVS P Y+++LS +L +TP +T+ ++  W++++   
Sbjct  221  LAPGIDWKAYLNAAGLPDVPSDEVIVSQPEYLKALSKLLAETPLRTLKNYLIWRLVRSLA  280

Query  61   DQIEDAKITALREFSNKLAGKDPKATTERWRTCIRSLDRGLSWSLSRFYVLDAFSEASKE  120
              + D    A  EF   L+G   +    RW+ C+  ++  L  +L R YV   F E +K 
Sbjct  281  PYLSDEFRDANFEFYGTLSGTKQR---PRWKRCVSLVNGLLGEALGRLYVKKYFPEEAKA  337

Query  121  LGDQIILDIKQRFVNILHQTSWMSPDVRKLSIEKVDNIVQKIGYP  165
              ++++ +IK+ F   L +  WM  + +K ++EK+D +  KIGYP
Sbjct  338  RVEELVENIKEAFRERLDELDWMDEETKKKALEKLDAMTVKIGYP  382



Lambda      K        H        a         alpha
   0.319    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00022816

Length=649
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13. M13 ...  328     1e-107
CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13. Mammal...  196     1e-59 


>CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13.  M13 peptidases 
are well-studied proteases found in a wide range of organisms 
including mammals and bacteria. In mammals they participate 
in processes such as cardiovascular development, blood-pressure 
regulation, nervous control of respiration, and regulation 
of the function of neuropeptides in the central nervous 
system. In bacteria they may be used for digestion of 
milk.
Length=382

 Score = 328 bits (843),  Expect = 1e-107, Method: Composition-based stats.
 Identities = 114/394 (29%), Positives = 199/394 (51%), Gaps = 19/394 (5%)

Query  19   PCEDFEQYVCGGWRERHDLRLDQGSMFTGTLMAEAAQMRLRHILESTSVPEAADEENLRK  78
            PC+DF QY CGGW + H +  D+ S  T   + E  + +LR ILE  +  E+ D   + K
Sbjct  1    PCDDFYQYACGGWLKNHPIPADKSSWGTFDELRERNEKQLREILEEAAASES-DPGAVEK  59

Query  79   LKSAYNACLDEAVISKRGSEPLDALLAQLDDIYSAESTAVGSDVNITDAVLFLMNSGVTA  138
             K  Y +C+D   I K G +PL  LL ++    + +        ++ + +  L   GV +
Sbjct  60   AKDLYKSCMDTDAIEKLGLKPLKPLLDEIGGPLANKDKF-----DLLETLAKLRRYGVDS  114

Query  139  LVEMGPGAKPDDRDPDKIVISVGPPDEIGLPVREYYN------SSQTVSEYTRVLKEVLG  192
            L   G G  PDD++  + ++ +  P  +GLP R+YY       S++    Y   + ++L 
Sbjct  115  LFGFGVG--PDDKNSSRNILYLDQP-GLGLPDRDYYLKDRDEKSAEIREAYKAYIAKLLT  171

Query  193  NF-VGQDKRVSVEDIVLFEWKLANATPDAQTLQDVEKYYNPRNLDQVESMLPQISLSTIV  251
                 ++     E+++ FE KLA A+   +  +D EK YNP  L +++ + P I     +
Sbjct  172  LLGASEEAAALAEEVLAFETKLAKASLSREERRDPEKTYNPMTLAELQKLAPGIDWKAYL  231

Query  252  SMLSPAGFKPDRLIVSSPSYMESLSTILRDTPRKTVHHFFKWKIIQVYVDQIEDAKITAL  311
            +         D +IVS P Y+++LS +L +TP +T+ ++  W++++     + D    A 
Sbjct  232  NAAGLPDVPSDEVIVSQPEYLKALSKLLAETPLRTLKNYLIWRLVRSLAPYLSDEFRDAN  291

Query  312  REFSNKLAGKDPKATTERWRTCIRSLDRGLSWSLSRFYVLDAFSEASKELGDQIILDIKQ  371
             EF   L+G   +    RW+ C+  ++  L  +L R YV   F E +K   ++++ +IK+
Sbjct  292  FEFYGTLSGTKQR---PRWKRCVSLVNGLLGEALGRLYVKKYFPEEAKARVEELVENIKE  348

Query  372  RFVNILHQTSWMSPDVRKLSIEKVDNIVQKIGYP  405
             F   L +  WM  + +K ++EK+D +  KIGYP
Sbjct  349  AFRERLDELDWMDEETKKKALEKLDAMTVKIGYP  382


>CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13.  Mammalian enzymes 
are typically type-II membrane anchored enzymes which 
are known, or believed to activate or inactivate oligopeptide 
(pro)-hormones such as opioid peptides. The family also contains 
a bacterial member believed to be involved with milk 
protein cleavage.
Length=205

 Score = 196 bits (501),  Expect = 1e-59, Method: Composition-based stats.
 Identities = 75/180 (42%), Positives = 105/180 (58%), Gaps = 5/180 (3%)

Query  467  NAYYNPPLQEIVFPTGIMQPPVFYGPSAPLYLAYGAFGAVSGHELSHAFDSTGRHYDQTG  526
            NAYY P   EIVFP  I+QPP F+ P+ P  + YG  G V  HE++H FD  G  +D+ G
Sbjct  1    NAYYQPNRNEIVFPAAILQPP-FFDPNYPRAVNYGGIGNVIAHEITHGFDDQGAQFDKDG  59

Query  527  NYTDWWDAKTVQGFEDRAQCFVDQYSNFTVLGENGEPLHVNGRLTLGENIADAGGIGAAF  586
            N   WW  +  + F+DRAQC ++QYS +T   +  +    NG LTLGENIAD GG+  A 
Sbjct  60   NLRSWWTDEDAEEFKDRAQCLIEQYSEYTPP-DGTK--CANGTLTLGENIADLGGLTIAL  116

Query  587  QAWKKRDEASPDAHLPGLSNFSKEQLFFIAYGNWWCAKTTKEAAIQAIYTDPHAPKFARI  646
            +A+KK   ++ +  LPG  N + +QLFF      WC K +    ++ +  DPH+P   R+
Sbjct  117  RAYKKLL-SANETVLPGFENLTPDQLFFRGAAQIWCMKQSPAEVLRQLLVDPHSPPEFRV  175



Lambda      K        H        a         alpha
   0.317    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 819983240


Query= TCONS_00022817

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13. M13 ...  289     7e-95
CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13. Mammal...  68.6    7e-14


>CDD:461703 pfam05649, Peptidase_M13_N, Peptidase family M13.  M13 peptidases 
are well-studied proteases found in a wide range of organisms 
including mammals and bacteria. In mammals they participate 
in processes such as cardiovascular development, blood-pressure 
regulation, nervous control of respiration, and regulation 
of the function of neuropeptides in the central nervous 
system. In bacteria they may be used for digestion of 
milk.
Length=382

 Score = 289 bits (743),  Expect = 7e-95, Method: Composition-based stats.
 Identities = 101/365 (28%), Positives = 182/365 (50%), Gaps = 17/365 (5%)

Query  3    TGTLMAEAAQMRLRHILESTSVPEAADEENLRKLKSAYNACLDEAVISKRGSEPLDALLA  62
            T   + E  + +LR ILE  +  E+ D   + K K  Y +C+D   I K G +PL  LL 
Sbjct  28   TFDELRERNEKQLREILEEAAASES-DPGAVEKAKDLYKSCMDTDAIEKLGLKPLKPLLD  86

Query  63   QLDDIYSAESTAVGSDVNITDAVLFLMNSGVTALVEMGPGPDDRDPDKIVISVGPPDEIG  122
            ++    + +        ++ + +  L   GV +L   G GPDD++  + ++ +  P  +G
Sbjct  87   EIGGPLANKDKF-----DLLETLAKLRRYGVDSLFGFGVGPDDKNSSRNILYLDQP-GLG  140

Query  123  LPVREYYN------SSQTVSEYTRVLKEVLGNF-VGQDKRVSVEDIVLFEWKLANATPDA  175
            LP R+YY       S++    Y   + ++L      ++     E+++ FE KLA A+   
Sbjct  141  LPDRDYYLKDRDEKSAEIREAYKAYIAKLLTLLGASEEAAALAEEVLAFETKLAKASLSR  200

Query  176  QTLQDVEKYYNPRNLDQVESMLPQISLSTIVSMLSPAGFKPDRLIVSSPSYMESLSTILR  235
            +  +D EK YNP  L +++ + P I     ++         D +IVS P Y+++LS +L 
Sbjct  201  EERRDPEKTYNPMTLAELQKLAPGIDWKAYLNAAGLPDVPSDEVIVSQPEYLKALSKLLA  260

Query  236  DTPRKTVHHFFKWKIIQVYVDQIEDAKITALREFSNKLAGKDPKATTERWRTCIRSLDRG  295
            +TP +T+ ++  W++++     + D    A  EF   L+G   +    RW+ C+  ++  
Sbjct  261  ETPLRTLKNYLIWRLVRSLAPYLSDEFRDANFEFYGTLSGTKQR---PRWKRCVSLVNGL  317

Query  296  LSWSLSRFYVLDAFSEASKELGDQIILDIKQRFVNILHQTSWMSPDVRKLSIEKVDNIVQ  355
            L  +L R YV   F E +K   ++++ +IK+ F   L +  WM  + +K ++EK+D +  
Sbjct  318  LGEALGRLYVKKYFPEEAKARVEELVENIKEAFRERLDELDWMDEETKKKALEKLDAMTV  377

Query  356  KIGYP  360
            KIGYP
Sbjct  378  KIGYP  382


>CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13.  Mammalian enzymes 
are typically type-II membrane anchored enzymes which 
are known, or believed to activate or inactivate oligopeptide 
(pro)-hormones such as opioid peptides. The family also contains 
a bacterial member believed to be involved with milk 
protein cleavage.
Length=205

 Score = 68.6 bits (168),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 25/48 (52%), Positives = 31/48 (65%), Gaps = 1/48 (2%)

Query  422  NAYYNPPLQEIVFPTGIMQPPVFYGPSAPLYLAYGAFGAVSGHELSHG  469
            NAYY P   EIVFP  I+QPP F+ P+ P  + YG  G V  HE++HG
Sbjct  1    NAYYQPNRNEIVFPAAILQPP-FFDPNYPRAVNYGGIGNVIAHEITHG  47



Lambda      K        H        a         alpha
   0.317    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00022818

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13. Mammal...  210     1e-68


>CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13.  Mammalian enzymes 
are typically type-II membrane anchored enzymes which 
are known, or believed to activate or inactivate oligopeptide 
(pro)-hormones such as opioid peptides. The family also contains 
a bacterial member believed to be involved with milk 
protein cleavage.
Length=205

 Score = 210 bits (536),  Expect = 1e-68, Method: Composition-based stats.
 Identities = 85/197 (43%), Positives = 116/197 (59%), Gaps = 5/197 (3%)

Query  85   NAYYNPPLQEIVFPTGIMQPPVFYGPSAPLYLAYGAFGAVSGHELSHAFDSTGRHYDQTG  144
            NAYY P   EIVFP  I+QPP F+ P+ P  + YG  G V  HE++H FD  G  +D+ G
Sbjct  1    NAYYQPNRNEIVFPAAILQPP-FFDPNYPRAVNYGGIGNVIAHEITHGFDDQGAQFDKDG  59

Query  145  NYTDWWDAKTVQGFEDRAQCFVDQYSNFTVLGENGEPLHVNGRLTLGENIADAGGIGAAF  204
            N   WW  +  + F+DRAQC ++QYS +T   +  +    NG LTLGENIAD GG+  A 
Sbjct  60   NLRSWWTDEDAEEFKDRAQCLIEQYSEYTPP-DGTK--CANGTLTLGENIADLGGLTIAL  116

Query  205  QAWKKRDEASPDAHLPGLSNFSKEQLFFIAYGNWWCAKTTKEAAIQAIYTDPHAPKFARI  264
            +A+KK   ++ +  LPG  N + +QLFF      WC K +    ++ +  DPH+P   R+
Sbjct  117  RAYKKLL-SANETVLPGFENLTPDQLFFRGAAQIWCMKQSPAEVLRQLLVDPHSPPEFRV  175

Query  265  IGTMANSREFNEAFNCP  281
             G M+N   F EAFNCP
Sbjct  176  NGVMSNMPAFYEAFNCP  192



Lambda      K        H        a         alpha
   0.318    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00022819

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13. Mammal...  210     1e-69


>CDD:279739 pfam01431, Peptidase_M13, Peptidase family M13.  Mammalian enzymes 
are typically type-II membrane anchored enzymes which 
are known, or believed to activate or inactivate oligopeptide 
(pro)-hormones such as opioid peptides. The family also contains 
a bacterial member believed to be involved with milk 
protein cleavage.
Length=205

 Score = 210 bits (537),  Expect = 1e-69, Method: Composition-based stats.
 Identities = 86/197 (44%), Positives = 117/197 (59%), Gaps = 5/197 (3%)

Query  32   NAYYNPPLQEIVFPTGIMQPPVFYGPSAPLYLAYGAFGAVSGHELSHGFDSTGRHYDQTG  91
            NAYY P   EIVFP  I+QPP F+ P+ P  + YG  G V  HE++HGFD  G  +D+ G
Sbjct  1    NAYYQPNRNEIVFPAAILQPP-FFDPNYPRAVNYGGIGNVIAHEITHGFDDQGAQFDKDG  59

Query  92   NYTDWWDAKTVQGFEDRAQCFVDQYSNFTVLGENGEPLHVNGRLTLGENIADAGGIGAAF  151
            N   WW  +  + F+DRAQC ++QYS +T   +  +    NG LTLGENIAD GG+  A 
Sbjct  60   NLRSWWTDEDAEEFKDRAQCLIEQYSEYTPP-DGTK--CANGTLTLGENIADLGGLTIAL  116

Query  152  QAWKKRDEASPDAHLPGLSNFSKEQLFFIAYGNWWCAKTTKEAAIQAIYTDPHAPKFARI  211
            +A+KK   ++ +  LPG  N + +QLFF      WC K +    ++ +  DPH+P   R+
Sbjct  117  RAYKKLL-SANETVLPGFENLTPDQLFFRGAAQIWCMKQSPAEVLRQLLVDPHSPPEFRV  175

Query  212  IGTMANSREFNEAFNCP  228
             G M+N   F EAFNCP
Sbjct  176  NGVMSNMPAFYEAFNCP  192



Lambda      K        H        a         alpha
   0.319    0.135    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00022820

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00022821

Length=1684
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  198     1e-58
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  69.6    1e-14


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 198 bits (505),  Expect = 1e-58, Method: Composition-based stats.
 Identities = 67/195 (34%), Positives = 108/195 (55%), Gaps = 19/195 (10%)

Query  1442  LAQQLTLVEMAALSEVDWKDLVDMNWSSGSPSTRNWVQFLTEEERRGIDLVVGRFNLMVR  1501
             LA+QLTL+E     ++  ++L+   WS              +E    I+ ++ RFN +  
Sbjct  2     LARQLTLIEFELFRKIKPRELLGSAWSKKDK----------KENSPNIEAMIARFNKLSN  51

Query  1502  WVVSEIVLVRTLEERASTIVKFIHTAAHAKRICNYATMLQIAIALSSTDCSRLQKTWALV  1561
             WV SEI+    L++RA  I KFI  A H + + N+ +++ I   L+S+  SRL+KTW LV
Sbjct  52    WVASEILSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELV  111

Query  1562  PPSERRLLKDMELLIQPVRNFHDLRMEMETANLQEGCIPFVGLYVHDLTYNAQKPAQVAN  1621
                 ++ L+++E L+ P RNF + R  + +A+    CIPF+GLY+ DLT+  +      N
Sbjct  112   SKKYKKTLEELEKLMSPSRNFKNYREALSSASP--PCIPFLGLYLTDLTFIEE-----GN  164

Query  1622  PN--GEPLVNFERYR  1634
             P+     L+NFE+ R
Sbjct  165   PDFLEGGLINFEKRR  179


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 69.6 bits (171),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 43/103 (42%), Gaps = 14/103 (14%)

Query  388  AATPARLVAQISSESFM-DYELVSDFFLTFRSYLSPG----------NLLSLLLARLQWA  436
            A T  +LV  ++S   M D   +S F LT+RS+ +P           N+   L       
Sbjct  4    AGTLEKLVEYLTSTRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSSDSY  63

Query  437  INRLQDDGRIIRIRTFAALRHWILNYFADDFVPDYDLRARFCD  479
                      IRIR  + LRHW+ NYF  DF  D  L +R   
Sbjct  64   WI--SKKTLPIRIRVLSVLRHWVENYF-SDFNDDPVLLSRLEK  103



Lambda      K        H        a         alpha
   0.315    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2118321216


Query= TCONS_00027346

Length=1562
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  198     1e-58
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  69.6    1e-14


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 198 bits (505),  Expect = 1e-58, Method: Composition-based stats.
 Identities = 67/195 (34%), Positives = 108/195 (55%), Gaps = 19/195 (10%)

Query  1320  LAQQLTLVEMAALSEVDWKDLVDMNWSSGSPSTRNWVQFLTEEERRGIDLVVGRFNLMVR  1379
             LA+QLTL+E     ++  ++L+   WS              +E    I+ ++ RFN +  
Sbjct  2     LARQLTLIEFELFRKIKPRELLGSAWSKKDK----------KENSPNIEAMIARFNKLSN  51

Query  1380  WVVSEIVLVRTLEERASTIVKFIHTAAHAKRICNYATMLQIAIALSSTDCSRLQKTWALV  1439
             WV SEI+    L++RA  I KFI  A H + + N+ +++ I   L+S+  SRL+KTW LV
Sbjct  52    WVASEILSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELV  111

Query  1440  PPSERRLLKDMELLIQPVRNFHDLRMEMETANLQEGCIPFVGLYVHDLTYNAQKPAQVAN  1499
                 ++ L+++E L+ P RNF + R  + +A+    CIPF+GLY+ DLT+  +      N
Sbjct  112   SKKYKKTLEELEKLMSPSRNFKNYREALSSASP--PCIPFLGLYLTDLTFIEE-----GN  164

Query  1500  PN--GEPLVNFERYR  1512
             P+     L+NFE+ R
Sbjct  165   PDFLEGGLINFEKRR  179


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 69.6 bits (171),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 43/103 (42%), Gaps = 14/103 (14%)

Query  266  AATPARLVAQISSESFM-DYELVSDFFLTFRSYLSPG----------NLLSLLLARLQWA  314
            A T  +LV  ++S   M D   +S F LT+RS+ +P           N+   L       
Sbjct  4    AGTLEKLVEYLTSTRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSSDSY  63

Query  315  INRLQDDGRIIRIRTFAALRHWILNYFADDFVPDYDLRARFCD  357
                      IRIR  + LRHW+ NYF  DF  D  L +R   
Sbjct  64   WI--SKKTLPIRIRVLSVLRHWVENYF-SDFNDDPVLLSRLEK  103



Lambda      K        H        a         alpha
   0.315    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1985235406


Query= TCONS_00022822

Length=1684
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  198     1e-58
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  69.6    1e-14


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 198 bits (505),  Expect = 1e-58, Method: Composition-based stats.
 Identities = 67/195 (34%), Positives = 108/195 (55%), Gaps = 19/195 (10%)

Query  1442  LAQQLTLVEMAALSEVDWKDLVDMNWSSGSPSTRNWVQFLTEEERRGIDLVVGRFNLMVR  1501
             LA+QLTL+E     ++  ++L+   WS              +E    I+ ++ RFN +  
Sbjct  2     LARQLTLIEFELFRKIKPRELLGSAWSKKDK----------KENSPNIEAMIARFNKLSN  51

Query  1502  WVVSEIVLVRTLEERASTIVKFIHTAAHAKRICNYATMLQIAIALSSTDCSRLQKTWALV  1561
             WV SEI+    L++RA  I KFI  A H + + N+ +++ I   L+S+  SRL+KTW LV
Sbjct  52    WVASEILSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELV  111

Query  1562  PPSERRLLKDMELLIQPVRNFHDLRMEMETANLQEGCIPFVGLYVHDLTYNAQKPAQVAN  1621
                 ++ L+++E L+ P RNF + R  + +A+    CIPF+GLY+ DLT+  +      N
Sbjct  112   SKKYKKTLEELEKLMSPSRNFKNYREALSSASP--PCIPFLGLYLTDLTFIEE-----GN  164

Query  1622  PN--GEPLVNFERYR  1634
             P+     L+NFE+ R
Sbjct  165   PDFLEGGLINFEKRR  179


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 69.6 bits (171),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 43/103 (42%), Gaps = 14/103 (14%)

Query  388  AATPARLVAQISSESFM-DYELVSDFFLTFRSYLSPG----------NLLSLLLARLQWA  436
            A T  +LV  ++S   M D   +S F LT+RS+ +P           N+   L       
Sbjct  4    AGTLEKLVEYLTSTRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSSDSY  63

Query  437  INRLQDDGRIIRIRTFAALRHWILNYFADDFVPDYDLRARFCD  479
                      IRIR  + LRHW+ NYF  DF  D  L +R   
Sbjct  64   WI--SKKTLPIRIRVLSVLRHWVENYF-SDFNDDPVLLSRLEK  103



Lambda      K        H        a         alpha
   0.315    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2118321216


Query= TCONS_00022823

Length=1481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  171     2e-49
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  69.6    1e-14


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 171 bits (436),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 55/162 (34%), Positives = 90/162 (56%), Gaps = 12/162 (7%)

Query  1320  LAQQLTLVEMAALSEVDWKDLVDMNWSSGSPSTRNWVQFLTEEERRGIDLVVGRFNLMVR  1379
             LA+QLTL+E     ++  ++L+   WS              +E    I+ ++ RFN +  
Sbjct  2     LARQLTLIEFELFRKIKPRELLGSAWSKKDK----------KENSPNIEAMIARFNKLSN  51

Query  1380  WVVSEIVLVRTLEERASTIVKFIHTAAHAKRICNYATMLQIAIALSSTDCSRLQKTWALV  1439
             WV SEI+    L++RA  I KFI  A H + + N+ +++ I   L+S+  SRL+KTW LV
Sbjct  52    WVASEILSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELV  111

Query  1440  PPSERRLLKDMELLIQPVRNFHDLRMEMETANLQEGCIPFVG  1481
                 ++ L+++E L+ P RNF + R  + +A+    CIPF+G
Sbjct  112   SKKYKKTLEELEKLMSPSRNFKNYREALSSASP--PCIPFLG  151


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 69.6 bits (171),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 43/103 (42%), Gaps = 14/103 (14%)

Query  266  AATPARLVAQISSESFM-DYELVSDFFLTFRSYLSPG----------NLLSLLLARLQWA  314
            A T  +LV  ++S   M D   +S F LT+RS+ +P           N+   L       
Sbjct  4    AGTLEKLVEYLTSTRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSSDSY  63

Query  315  INRLQDDGRIIRIRTFAALRHWILNYFADDFVPDYDLRARFCD  357
                      IRIR  + LRHW+ NYF  DF  D  L +R   
Sbjct  64   WI--SKKTLPIRIRVLSVLRHWVENYF-SDFNDDPVLLSRLEK  103



Lambda      K        H        a         alpha
   0.314    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0758    0.140     1.90     42.6     43.6 

Effective search space used: 1875321484


Query= TCONS_00022824

Length=1603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  171     2e-49
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  69.6    1e-14


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 171 bits (436),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 55/162 (34%), Positives = 90/162 (56%), Gaps = 12/162 (7%)

Query  1442  LAQQLTLVEMAALSEVDWKDLVDMNWSSGSPSTRNWVQFLTEEERRGIDLVVGRFNLMVR  1501
             LA+QLTL+E     ++  ++L+   WS              +E    I+ ++ RFN +  
Sbjct  2     LARQLTLIEFELFRKIKPRELLGSAWSKKDK----------KENSPNIEAMIARFNKLSN  51

Query  1502  WVVSEIVLVRTLEERASTIVKFIHTAAHAKRICNYATMLQIAIALSSTDCSRLQKTWALV  1561
             WV SEI+    L++RA  I KFI  A H + + N+ +++ I   L+S+  SRL+KTW LV
Sbjct  52    WVASEILSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELV  111

Query  1562  PPSERRLLKDMELLIQPVRNFHDLRMEMETANLQEGCIPFVG  1603
                 ++ L+++E L+ P RNF + R  + +A+    CIPF+G
Sbjct  112   SKKYKKTLEELEKLMSPSRNFKNYREALSSASP--PCIPFLG  151


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 69.6 bits (171),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 43/103 (42%), Gaps = 14/103 (14%)

Query  388  AATPARLVAQISSESFM-DYELVSDFFLTFRSYLSPG----------NLLSLLLARLQWA  436
            A T  +LV  ++S   M D   +S F LT+RS+ +P           N+   L       
Sbjct  4    AGTLEKLVEYLTSTRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSSDSY  63

Query  437  INRLQDDGRIIRIRTFAALRHWILNYFADDFVPDYDLRARFCD  479
                      IRIR  + LRHW+ NYF  DF  D  L +R   
Sbjct  64   WI--SKKTLPIRIRVLSVLRHWVENYF-SDFNDDPVLLSRLEK  103



Lambda      K        H        a         alpha
   0.314    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2040870848


Query= TCONS_00027347

Length=1481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  171     2e-49
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  69.6    1e-14


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 171 bits (436),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 55/162 (34%), Positives = 90/162 (56%), Gaps = 12/162 (7%)

Query  1320  LAQQLTLVEMAALSEVDWKDLVDMNWSSGSPSTRNWVQFLTEEERRGIDLVVGRFNLMVR  1379
             LA+QLTL+E     ++  ++L+   WS              +E    I+ ++ RFN +  
Sbjct  2     LARQLTLIEFELFRKIKPRELLGSAWSKKDK----------KENSPNIEAMIARFNKLSN  51

Query  1380  WVVSEIVLVRTLEERASTIVKFIHTAAHAKRICNYATMLQIAIALSSTDCSRLQKTWALV  1439
             WV SEI+    L++RA  I KFI  A H + + N+ +++ I   L+S+  SRL+KTW LV
Sbjct  52    WVASEILSEEDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELV  111

Query  1440  PPSERRLLKDMELLIQPVRNFHDLRMEMETANLQEGCIPFVG  1481
                 ++ L+++E L+ P RNF + R  + +A+    CIPF+G
Sbjct  112   SKKYKKTLEELEKLMSPSRNFKNYREALSSASP--PCIPFLG  151


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 69.6 bits (171),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 43/103 (42%), Gaps = 14/103 (14%)

Query  266  AATPARLVAQISSESFM-DYELVSDFFLTFRSYLSPG----------NLLSLLLARLQWA  314
            A T  +LV  ++S   M D   +S F LT+RS+ +P           N+   L       
Sbjct  4    AGTLEKLVEYLTSTRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSSDSY  63

Query  315  INRLQDDGRIIRIRTFAALRHWILNYFADDFVPDYDLRARFCD  357
                      IRIR  + LRHW+ NYF  DF  D  L +R   
Sbjct  64   WI--SKKTLPIRIRVLSVLRHWVENYF-SDFNDDPVLLSRLEK  103



Lambda      K        H        a         alpha
   0.314    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1875321484


Query= TCONS_00022826

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               76.3    7e-18


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 76.3 bits (188),  Expect = 7e-18, Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 6/96 (6%)

Query  174  LNMAASNGDVDRVHKLVGGKAKDYVDVNMADEEGTVPLIYASCFGHQDVVSALLDAGANV  233
            L++AA NG+++ V  L+   A    D N+ D+ G   L  A+  GH ++V  LL+  A+V
Sbjct  1    LHLAAKNGNLELVKLLLENGA----DANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADV  55

Query  234  DQQDRNQWSALMWAMTNRHKTIAKILLDHGASPDIK  269
            + +D N  +AL +A  + H  I K+LL+ GA  ++K
Sbjct  56   NLKD-NGRTALHYAARSGHLEIVKLLLEKGADINVK  90


 Score = 56.7 bits (137),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 27/70 (39%), Positives = 42/70 (60%), Gaps = 2/70 (3%)

Query  211  LIYASCFGHQDVVSALLDAGANVDQQDRNQWSALMWAMTNRHKTIAKILLDHGASPDIKS  270
            L  A+  G+ ++V  LL+ GA+ + QD+N  +AL  A  N H  I K+LL+H A  ++K 
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLK-  58

Query  271  SSGGTAFDFA  280
             +G TA  +A
Sbjct  59   DNGRTALHYA  68



Lambda      K        H        a         alpha
   0.313    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00022827

Length=860
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460359 pfam01843, DIL, DIL domain. The DIL domain has no know...  110     3e-29
CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               77.5    6e-18


>CDD:460359 pfam01843, DIL, DIL domain.  The DIL domain has no known function.
Length=103

 Score = 110 bits (277),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 41/96 (43%), Positives = 56/96 (58%), Gaps = 17/96 (18%)

Query  586  QILSQLLYWLGAELFNRIMTTKRYLARTKAMQIRMNVSTLEDWARTNNRQPEHYENGSTT  645
            Q+ SQL Y++ AELFNR++  K+Y + +K MQIR N+S LE+WAR+N  + E        
Sbjct  1    QLFSQLFYFINAELFNRLLLRKKYCSWSKGMQIRYNLSRLEEWARSNGLESE--------  52

Query  646  CTGESTMESARKHLAPVIQLLQWLQCFSSLGDDHES  681
                     AR HLAP+IQ  Q LQ   S  +D +S
Sbjct  53   ---------ARDHLAPLIQAAQLLQLRKSTLEDLDS  79


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 77.5 bits (191),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 6/96 (6%)

Query  174  LNMAASNGDVDRVHKLVGGKAKDYVDVNMADEEGTVPLIYASCFGHQDVVSALLDAGANV  233
            L++AA NG+++ V  L+   A    D N+ D+ G   L  A+  GH ++V  LL+  A+V
Sbjct  1    LHLAAKNGNLELVKLLLENGA----DANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADV  55

Query  234  DQQDRNQWSALMWAMTNRHKTIAKILLDHGASPDIK  269
            + +D N  +AL +A  + H  I K+LL+ GA  ++K
Sbjct  56   NLKD-NGRTALHYAARSGHLEIVKLLLEKGADINVK  90


 Score = 57.8 bits (140),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query  211  LIYASCFGHQDVVSALLDAGANVDQQDRNQWSALMWAMTNRHKTIAKILLDHGASPDIKS  270
            L  A+  G+ ++V  LL+ GA+ + QD+N  +AL  A  N H  I K+LL+H A  ++K 
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLK-  58

Query  271  SSGGTAFDFA-QPGS-EISEYLHENGYNF  297
             +G TA  +A + G  EI + L E G + 
Sbjct  59   DNGRTALHYAARSGHLEIVKLLLEKGADI  87



Lambda      K        H        a         alpha
   0.315    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1098168210


Query= TCONS_00022828

Length=893
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460359 pfam01843, DIL, DIL domain. The DIL domain has no know...  110     3e-29
CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               77.8    5e-18


>CDD:460359 pfam01843, DIL, DIL domain.  The DIL domain has no known function.
Length=103

 Score = 110 bits (277),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 41/96 (43%), Positives = 56/96 (58%), Gaps = 17/96 (18%)

Query  619  QILSQLLYWLGAELFNRIMTTKRYLARTKAMQIRMNVSTLEDWARTNNRQPEHYENGSTT  678
            Q+ SQL Y++ AELFNR++  K+Y + +K MQIR N+S LE+WAR+N  + E        
Sbjct  1    QLFSQLFYFINAELFNRLLLRKKYCSWSKGMQIRYNLSRLEEWARSNGLESE--------  52

Query  679  CTGESTMESARKHLAPVIQLLQWLQCFSSLGDDHES  714
                     AR HLAP+IQ  Q LQ   S  +D +S
Sbjct  53   ---------ARDHLAPLIQAAQLLQLRKSTLEDLDS  79


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 77.8 bits (192),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 6/96 (6%)

Query  207  LNMAASNGDVDRVHKLVGGKAKDYVDVNMADEEGTVPLIYASCFGHQDVVSALLDAGANV  266
            L++AA NG+++ V  L+   A    D N+ D+ G   L  A+  GH ++V  LL+  A+V
Sbjct  1    LHLAAKNGNLELVKLLLENGA----DANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADV  55

Query  267  DQQDRNQWSALMWAMTNRHKTIAKILLDHGASPDIK  302
            + +D N  +AL +A  + H  I K+LL+ GA  ++K
Sbjct  56   NLKD-NGRTALHYAARSGHLEIVKLLLEKGADINVK  90


 Score = 57.8 bits (140),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query  244  LIYASCFGHQDVVSALLDAGANVDQQDRNQWSALMWAMTNRHKTIAKILLDHGASPDIKS  303
            L  A+  G+ ++V  LL+ GA+ + QD+N  +AL  A  N H  I K+LL+H A  ++K 
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLK-  58

Query  304  SSGGTAFDFA-QPGS-EISEYLHENGYNF  330
             +G TA  +A + G  EI + L E G + 
Sbjct  59   DNGRTALHYAARSGHLEIVKLLLEKGADI  87



Lambda      K        H        a         alpha
   0.315    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1145540172


Query= TCONS_00022829

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460359 pfam01843, DIL, DIL domain. The DIL domain has no know...  108     5e-29


>CDD:460359 pfam01843, DIL, DIL domain.  The DIL domain has no known function.
Length=103

 Score = 108 bits (272),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 41/96 (43%), Positives = 56/96 (58%), Gaps = 17/96 (18%)

Query  263  QILSQLLYWLGAELFNRIMTTKRYLARTKAMQIRMNVSTLEDWARTNNRQPEHYENGSTT  322
            Q+ SQL Y++ AELFNR++  K+Y + +K MQIR N+S LE+WAR+N  + E        
Sbjct  1    QLFSQLFYFINAELFNRLLLRKKYCSWSKGMQIRYNLSRLEEWARSNGLESE--------  52

Query  323  CTGESTMESARKHLAPVIQLLQWLQCFSSLGDDHES  358
                     AR HLAP+IQ  Q LQ   S  +D +S
Sbjct  53   ---------ARDHLAPLIQAAQLLQLRKSTLEDLDS  79



Lambda      K        H        a         alpha
   0.317    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00027348

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.143    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00027349

Length=493


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00022830

Length=428


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00027350

Length=428


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00022832

Length=493


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00022831

Length=848
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  115     4e-30


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 115 bits (290),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 60/151 (40%), Positives = 75/151 (50%), Gaps = 6/151 (4%)

Query  615  QIDIDVPRTITSHIMFRRRYRGGQRLLFRVLHAMSLYFPDTGYVQGMAALAATLLAYY-D  673
            QI+ DVPRT      F      GQ  L R+L A S+Y PD GY QGM  +AA LL  Y D
Sbjct  11   QIEKDVPRTFPHSFFFDNGP--GQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVYLD  68

Query  674  EEHAFIMLVRLWQLRGLERLYQSGFSGLMEALSDFER--EWLDAGEVAAKLNELAIPPTA  731
            EE AF   V L +   L   Y   F GL   L  FE   +     ++   L EL + P  
Sbjct  69   EEDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYVFEELLKKKLP-KLYKHLKELGLDPDL  127

Query  732  YGTRWYLTLFNYSIPFPAQLRVWDVFMLLGD  762
            + ++W+LTLF    P    LR+WD F L G+
Sbjct  128  FASQWFLTLFAREFPLSTVLRIWDYFFLEGE  158



Lambda      K        H        a         alpha
   0.313    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1080942042


Query= TCONS_00022833

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  60.3    3e-12


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 60.3 bits (147),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 26/71 (37%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query  269  VLDVGCGTGILSMFCAKAGAKKVISVDNS-NIIDRAKEIIYENGFGDVITCIRGKIEEVT  327
            VLD+GCGTG L++  A+ G  +V  VD S  +++RA+E   E G    +  ++G  E++ 
Sbjct  1    VLDLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAEAGLN--VEFVQGDAEDLP  58

Query  328  LPVSHVDIIVS  338
             P    D++VS
Sbjct  59   FPDGSFDLVVS  69



Lambda      K        H        a         alpha
   0.316    0.133    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0723    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00022834

Length=545
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  64.9    1e-13


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 64.9 bits (159),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 51/103 (50%), Gaps = 12/103 (12%)

Query  248  VLDVGCGTGILSMFCAKAGAKKVISVDNS-NIIDRAKEIIYENGFGDVITCIRGKIEEVT  306
            VLD+GCGTG L++  A+ G  +V  VD S  +++RA+E   E G    +  ++G  E++ 
Sbjct  1    VLDLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAEAGLN--VEFVQGDAEDLP  58

Query  307  LPVSHVDIIVSEWMGYCLL----FEAMFDSVIYARDRYLAPGG  345
             P    D++VS       L     EA    +     R L PGG
Sbjct  59   FPDGSFDLVVS-SGVLHHLPDPDLEAALREIA----RVLKPGG  96



Lambda      K        H        a         alpha
   0.317    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 687385964


Query= TCONS_00027351

Length=313


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00022835

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00022836

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  64.9    1e-13


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 64.9 bits (159),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 51/103 (50%), Gaps = 12/103 (12%)

Query  277  VLDVGCGTGILSMFCAKAGAKKVISVDNS-NIIDRAKEIIYENGFGDVITCIRGKIEEVT  335
            VLD+GCGTG L++  A+ G  +V  VD S  +++RA+E   E G    +  ++G  E++ 
Sbjct  1    VLDLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAEAGLN--VEFVQGDAEDLP  58

Query  336  LPVSHVDIIVSEWMGYCLL----FEAMFDSVIYARDRYLAPGG  374
             P    D++VS       L     EA    +     R L PGG
Sbjct  59   FPDGSFDLVVS-SGVLHHLPDPDLEAALREIA----RVLKPGG  96



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 720314296


Query= TCONS_00022837

Length=825
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  129     1e-35


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 129 bits (327),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 57/144 (40%), Positives = 84/144 (58%), Gaps = 15/144 (10%)

Query  336  ILLYGPPGTGKTLIARQIGKMLNAREPKVINGPEVLNKFVGQSEENIRKLFADAEKEYKE  395
            +LLYGPPGTGKT +A+ + K L A     I+G E+++K+VG+SE+ +R+LF  A      
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGA-PFIEISGSELVSKYVGESEKRLRELFEAA------  53

Query  396  KGEESGLHIIIFDELDAVCKQRGSGAGGGTGVGDSVVNQLLSKLDGVDQL-NNILLIGMT  454
              ++    +I  DE+DA+   R     GG      VVNQLL++LDG     + +++I  T
Sbjct  54   --KKLAPCVIFIDEIDALAGSR---GSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAAT  108

Query  455  NRKDMIDEALLRPGRLELHMEISL  478
            NR D +D ALL  GR +  +E  L
Sbjct  109  NRPDKLDPALL--GRFDRIIEFPL  130



Lambda      K        H        a         alpha
   0.317    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1047925220


Query= TCONS_00027352

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  125     1e-34


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 125 bits (317),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 57/144 (40%), Positives = 84/144 (58%), Gaps = 15/144 (10%)

Query  120  ILLYGPPGTGKTLIARQIGKMLNAREPKVINGPEVLNKFVGQSEENIRKLFADAEKEYKE  179
            +LLYGPPGTGKT +A+ + K L A     I+G E+++K+VG+SE+ +R+LF  A      
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGA-PFIEISGSELVSKYVGESEKRLRELFEAA------  53

Query  180  KGEESGLHIIIFDELDAVCKQRGSGAGGGTGVGDSVVNQLLSKLDGVDQL-NNILLIGMT  238
              ++    +I  DE+DA+   R     GG      VVNQLL++LDG     + +++I  T
Sbjct  54   --KKLAPCVIFIDEIDALAGSR---GSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAAT  108

Query  239  NRKDMIDEALLRPGRLELHMEISL  262
            NR D +D ALL  GR +  +E  L
Sbjct  109  NRPDKLDPALL--GRFDRIIEFPL  130



Lambda      K        H        a         alpha
   0.318    0.136    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 772619276


Query= TCONS_00022838

Length=847
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  130     6e-36


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 130 bits (329),  Expect = 6e-36, Method: Composition-based stats.
 Identities = 57/144 (40%), Positives = 84/144 (58%), Gaps = 15/144 (10%)

Query  358  ILLYGPPGTGKTLIARQIGKMLNAREPKVINGPEVLNKFVGQSEENIRKLFADAEKEYKE  417
            +LLYGPPGTGKT +A+ + K L A     I+G E+++K+VG+SE+ +R+LF  A      
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGA-PFIEISGSELVSKYVGESEKRLRELFEAA------  53

Query  418  KGEESGLHIIIFDELDAVCKQRGSGAGGGTGVGDSVVNQLLSKLDGVDQL-NNILLIGMT  476
              ++    +I  DE+DA+   R     GG      VVNQLL++LDG     + +++I  T
Sbjct  54   --KKLAPCVIFIDEIDALAGSR---GSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAAT  108

Query  477  NRKDMIDEALLRPGRLELHMEISL  500
            NR D +D ALL  GR +  +E  L
Sbjct  109  NRPDKLDPALL--GRFDRIIEFPL  130



Lambda      K        H        a         alpha
   0.317    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1079506528


Query= TCONS_00022839

Length=770
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  128     4e-35


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 128 bits (323),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 57/144 (40%), Positives = 84/144 (58%), Gaps = 15/144 (10%)

Query  281  ILLYGPPGTGKTLIARQIGKMLNAREPKVINGPEVLNKFVGQSEENIRKLFADAEKEYKE  340
            +LLYGPPGTGKT +A+ + K L A     I+G E+++K+VG+SE+ +R+LF  A      
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGA-PFIEISGSELVSKYVGESEKRLRELFEAA------  53

Query  341  KGEESGLHIIIFDELDAVCKQRGSGAGGGTGVGDSVVNQLLSKLDGVDQL-NNILLIGMT  399
              ++    +I  DE+DA+   R     GG      VVNQLL++LDG     + +++I  T
Sbjct  54   --KKLAPCVIFIDEIDALAGSR---GSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAAT  108

Query  400  NRKDMIDEALLRPGRLELHMEISL  423
            NR D +D ALL  GR +  +E  L
Sbjct  109  NRPDKLDPALL--GRFDRIIEFPL  130



Lambda      K        H        a         alpha
   0.318    0.136    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 983682752


Query= TCONS_00022841

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00022842

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00022843

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00022844

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00022846

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1      469     1e-163


>CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1.  
Length=453

 Score = 469 bits (1208),  Expect = 1e-163, Method: Composition-based stats.
 Identities = 206/477 (43%), Positives = 273/477 (57%), Gaps = 31/477 (6%)

Query  9    LKGVLRRDFFHGYATAAAQVEGAWNKDGKGQSIWDTFAHTPGKVKDGSTGDDAVRSYDLY  68
            +      DF  G ATAA Q+EGAWN+DGKG SIWDTF HTPGKV  G  GD A  SY  Y
Sbjct  1    MSDTFPEDFLWGTATAAYQIEGAWNEDGKGPSIWDTFCHTPGKVFGGDNGDVACDSYHRY  60

Query  69   KEDVALMKSYGVNAYRFSLSWSRIIPLGGCDDLVNEKGIEYYSNLVDELLRNGITPFVTL  128
            KEDVAL+K  GV AYRFS+SW RI P G  +  +NE G+ YY  L+DELL  GI P VTL
Sbjct  61   KEDVALLKELGVKAYRFSISWPRIFPKGEGE--INEAGLAYYDRLIDELLAAGIEPMVTL  118

Query  129  FHWDTPQSLEDRYGGMLNQEKFVPDFVNYARVCFERLGDRVKHWITFNEPGVYTLAGYAA  188
            +HWD PQ+L+D +GG  N    +  F  YA  CF+R GDRVK+W+TFNEP   +  GY  
Sbjct  119  YHWDLPQALQD-HGGWEN-RSTIDAFKRYAETCFKRFGDRVKYWLTFNEPWCASWLGYGT  176

Query  189  GVHAPGRSSFRDRNEEGDSSTEPFIVAHTELVAHGHVSRLYKQEFQPHQQGTIGITLHGN  248
            G HAPG+               P+  AH  L+AH    +LY++       G IGI L+ +
Sbjct  177  GEHAPGKDDGE----------APYQAAHHILLAHARAVKLYREH---GPDGQIGIVLNSS  223

Query  249  WSEPWDEADPLDQAAAERAREFEIAWFADPLYKTGDYPASMRAQLGDR--LPKFTPEESK  306
            W+ P   + P D  AAERA +F   WF DP+++ GDYP  M  Q  +R  LP FT E+ +
Sbjct  224  WAYPLSPS-PEDDEAAERADQFHNGWFLDPVFR-GDYPEEMMEQFRERGGLPNFTEEDKQ  281

Query  307  LVLGSSEFYGMNSYTTFFVKHKTTPADINDHKGNVEIHDFNKHGIPRGEESDTEWLRAAP  366
            L+ G+++F G+N YT+  V++   P  I            N    P    +D  W+   P
Sbjct  282  LIKGTADFLGLNYYTSRIVRNDPGPEAIPS---YTTGIGMNSEVNPSWPSTDWGWII-YP  337

Query  367  WGFRKLLNWIWSRYQ-MPIYVTENGTTAKGETAPSPSVLNDQFRIRFFEGYVGWALARAV  425
             G R LLN +  RY   PIY+TENG   K E       +ND +RI +   ++   + +A+
Sbjct  338  EGLRDLLNRLKKRYGNPPIYITENGAGYKDEI--ENGTVNDDYRIDYLRQHLN-QVLKAI  394

Query  426  KEDGIDIRSYFAWTFTDNWEWAAGYTDRFGCTFIDFDSPEKTRYPKQSAYYLDNLFK  482
             +DG+D+R YFAW+  DN+EWA GY+ RFG   +D     + R PK+SAY+   + +
Sbjct  395  -DDGVDVRGYFAWSLMDNFEWANGYSKRFGLVHVDRFE-TQERTPKKSAYWYKEVIE  449



Lambda      K        H        a         alpha
   0.319    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 601084202


Query= TCONS_00022847

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1      469     1e-163


>CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1.  
Length=453

 Score = 469 bits (1208),  Expect = 1e-163, Method: Composition-based stats.
 Identities = 206/477 (43%), Positives = 273/477 (57%), Gaps = 31/477 (6%)

Query  9    LKGVLRRDFFHGYATAAAQVEGAWNKDGKGQSIWDTFAHTPGKVKDGSTGDDAVRSYDLY  68
            +      DF  G ATAA Q+EGAWN+DGKG SIWDTF HTPGKV  G  GD A  SY  Y
Sbjct  1    MSDTFPEDFLWGTATAAYQIEGAWNEDGKGPSIWDTFCHTPGKVFGGDNGDVACDSYHRY  60

Query  69   KEDVALMKSYGVNAYRFSLSWSRIIPLGGCDDLVNEKGIEYYSNLVDELLRNGITPFVTL  128
            KEDVAL+K  GV AYRFS+SW RI P G  +  +NE G+ YY  L+DELL  GI P VTL
Sbjct  61   KEDVALLKELGVKAYRFSISWPRIFPKGEGE--INEAGLAYYDRLIDELLAAGIEPMVTL  118

Query  129  FHWDTPQSLEDRYGGMLNQEKFVPDFVNYARVCFERLGDRVKHWITFNEPGVYTLAGYAA  188
            +HWD PQ+L+D +GG  N    +  F  YA  CF+R GDRVK+W+TFNEP   +  GY  
Sbjct  119  YHWDLPQALQD-HGGWEN-RSTIDAFKRYAETCFKRFGDRVKYWLTFNEPWCASWLGYGT  176

Query  189  GVHAPGRSSFRDRNEEGDSSTEPFIVAHTELVAHGHVSRLYKQEFQPHQQGTIGITLHGN  248
            G HAPG+               P+  AH  L+AH    +LY++       G IGI L+ +
Sbjct  177  GEHAPGKDDGE----------APYQAAHHILLAHARAVKLYREH---GPDGQIGIVLNSS  223

Query  249  WSEPWDEADPLDQAAAERAREFEIAWFADPLYKTGDYPASMRAQLGDR--LPKFTPEESK  306
            W+ P   + P D  AAERA +F   WF DP+++ GDYP  M  Q  +R  LP FT E+ +
Sbjct  224  WAYPLSPS-PEDDEAAERADQFHNGWFLDPVFR-GDYPEEMMEQFRERGGLPNFTEEDKQ  281

Query  307  LVLGSSEFYGMNSYTTFFVKHKTTPADINDHKGNVEIHDFNKHGIPRGEESDTEWLRAAP  366
            L+ G+++F G+N YT+  V++   P  I            N    P    +D  W+   P
Sbjct  282  LIKGTADFLGLNYYTSRIVRNDPGPEAIPS---YTTGIGMNSEVNPSWPSTDWGWII-YP  337

Query  367  WGFRKLLNWIWSRYQ-MPIYVTENGTTAKGETAPSPSVLNDQFRIRFFEGYVGWALARAV  425
             G R LLN +  RY   PIY+TENG   K E       +ND +RI +   ++   + +A+
Sbjct  338  EGLRDLLNRLKKRYGNPPIYITENGAGYKDEI--ENGTVNDDYRIDYLRQHLN-QVLKAI  394

Query  426  KEDGIDIRSYFAWTFTDNWEWAAGYTDRFGCTFIDFDSPEKTRYPKQSAYYLDNLFK  482
             +DG+D+R YFAW+  DN+EWA GY+ RFG   +D     + R PK+SAY+   + +
Sbjct  395  -DDGVDVRGYFAWSLMDNFEWANGYSKRFGLVHVDRFE-TQERTPKKSAYWYKEVIE  449



Lambda      K        H        a         alpha
   0.319    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 601084202


Query= TCONS_00022848

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00027354

Length=745
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:405224 pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family ...  242     1e-75


>CDD:405224 pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal 
domain.  This domain represents a domain found to the 
N-terminus of the glycosyl hydrolase 65 family catalytic domain.
Length=233

 Score = 242 bits (619),  Expect = 1e-75, Method: Composition-based stats.
 Identities = 91/244 (37%), Positives = 124/244 (51%), Gaps = 14/244 (6%)

Query  5    LWYQQPAGNWEEALPVGNGRLGAMVYGRTDTEMLQLNEDSVWYGGPQNRVPHDAFECLPR  64
            LWY QPA NW EALP+GNGRLGAMV+G    E +QLNEDS+W GGP++   + A   LP 
Sbjct  1    LWYDQPATNWTEALPLGNGRLGAMVFGGVAKERIQLNEDSLWSGGPRDNNNYGAAGALPE  60

Query  65   LRSLIREGNHAEAEKLVRLAFFSHPISQRHYEPLGTLFLDFGHLPECTQNYRRSLDIERA  124
            +R+L+  G++AEAE+L           Q  Y+PLG L +D G+  + +  YRR LD+  A
Sbjct  61   IRALLFAGDYAEAERLAGKMMGGG---QGSYQPLGDLTIDSGNEGDVS-GYRRELDLSTA  116

Query  125  TTRVEYEHKGVKVRREVIASNPDSVIAIRVQASQ--KTDFTLRLTRMSELQYETNEYLDD  182
                 Y   GV   RE  AS PD V+ +R+ AS+    + T+ L             L  
Sbjct  117  IATTTYSVGGVTYTREYFASYPDQVLVVRLTASKAGSLNLTVSLETP-------LSRLAV  169

Query  183  VTTEDRTITMHITPGGHKSNRACCMVKVRTAEDQDSVTQIGNKLLV-NAQDALILISAQT  241
            VT +  T+T+         N       +R      SV   G  L V  A +  ++I+A T
Sbjct  170  VTGDGNTLTLRGQAPAGGDNGIRFEAILRVVATGGSVAVDGGTLTVEGADEVTLVIAAAT  229

Query  242  TYRC  245
             YR 
Sbjct  230  NYRG  233



Lambda      K        H        a         alpha
   0.320    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 947303952


Query= TCONS_00027353

Length=745
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:405224 pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family ...  242     1e-75


>CDD:405224 pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal 
domain.  This domain represents a domain found to the 
N-terminus of the glycosyl hydrolase 65 family catalytic domain.
Length=233

 Score = 242 bits (619),  Expect = 1e-75, Method: Composition-based stats.
 Identities = 91/244 (37%), Positives = 124/244 (51%), Gaps = 14/244 (6%)

Query  5    LWYQQPAGNWEEALPVGNGRLGAMVYGRTDTEMLQLNEDSVWYGGPQNRVPHDAFECLPR  64
            LWY QPA NW EALP+GNGRLGAMV+G    E +QLNEDS+W GGP++   + A   LP 
Sbjct  1    LWYDQPATNWTEALPLGNGRLGAMVFGGVAKERIQLNEDSLWSGGPRDNNNYGAAGALPE  60

Query  65   LRSLIREGNHAEAEKLVRLAFFSHPISQRHYEPLGTLFLDFGHLPECTQNYRRSLDIERA  124
            +R+L+  G++AEAE+L           Q  Y+PLG L +D G+  + +  YRR LD+  A
Sbjct  61   IRALLFAGDYAEAERLAGKMMGGG---QGSYQPLGDLTIDSGNEGDVS-GYRRELDLSTA  116

Query  125  TTRVEYEHKGVKVRREVIASNPDSVIAIRVQASQ--KTDFTLRLTRMSELQYETNEYLDD  182
                 Y   GV   RE  AS PD V+ +R+ AS+    + T+ L             L  
Sbjct  117  IATTTYSVGGVTYTREYFASYPDQVLVVRLTASKAGSLNLTVSLETP-------LSRLAV  169

Query  183  VTTEDRTITMHITPGGHKSNRACCMVKVRTAEDQDSVTQIGNKLLV-NAQDALILISAQT  241
            VT +  T+T+         N       +R      SV   G  L V  A +  ++I+A T
Sbjct  170  VTGDGNTLTLRGQAPAGGDNGIRFEAILRVVATGGSVAVDGGTLTVEGADEVTLVIAAAT  229

Query  242  TYRC  245
             YR 
Sbjct  230  NYRG  233



Lambda      K        H        a         alpha
   0.320    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 947303952


Query= TCONS_00027356

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460972 pfam03561, Allantoicase, Allantoicase repeat. This fam...  219     4e-72


>CDD:460972 pfam03561, Allantoicase, Allantoicase repeat.  This family is 
found in pairs in Allantoicases, forming the majority of the 
protein. These proteins allow the use of purines as secondary 
nitrogen sources in nitrogen-limiting conditions through 
the reaction: allantoate + H(2)0 = (-)-ureidoglycolate + urea.
Length=150

 Score = 219 bits (561),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 71/160 (44%), Positives = 89/160 (56%), Gaps = 12/160 (8%)

Query  33   KILACSDEFFAAASNLLTPTPPINRPGVFVHTGAWYDGWETRRHNPEPYDWVVIKLGVAS  92
            K+L+ SDE FA A NLL P P    PG F   G   DGWETRR     +DW +I+LG   
Sbjct  3    KVLSASDEHFAPAENLLLPPPV--FPG-FTEFGGMGDGWETRRRRDPGHDWAIIRLGAP-  58

Query  93   GAIQGVEVDTGFFHGNYGEKAELQGTYAPVDSGVTDEQIADPSFNGWTTILPPQPCGPSQ  152
            G I+G+EVDT  F GNY     ++  Y P D    +   A     GWT +LP    GP Q
Sbjct  59   GVIRGIEVDTAHFKGNYPPSVSVEAAYLPGDEDEPELDDA-----GWTELLPRTKLGPDQ  113

Query  153  RRAWKLNDYDPSNPKPYTHVRLLMYPDGGFARLRLYGHAI  192
            R  ++++       K YTHVRL +YPDGG ARLR+YG  +
Sbjct  114  RHFFEVDS---LTDKRYTHVRLNIYPDGGVARLRVYGRVV  150


 Score = 181 bits (461),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 83/160 (52%), Gaps = 18/160 (11%)

Query  216  GGLALSASNQHYTPISNLILPG--------RGKDMGDGWETARSRIPGYTDWAIFQLGLP  267
            GG  LSAS++H+ P  NL+LP          G  MGDGWET R R PG+ DWAI +LG P
Sbjct  1    GGKVLSASDEHFAPAENLLLPPPVFPGFTEFGG-MGDGWETRRRRDPGH-DWAIIRLGAP  58

Query  268  GSVAKIVVDTKDFRGNFPRAVRVHGLLEGSVAAGEVPAHDHPDWIPLLSGDKFCKADTEH  327
            G +  I VDT  F+GN+P +V V           + P  D   W  LL   K    D  H
Sbjct  59   GVIRGIEVDTAHFKGNYPPSVSVEAAYLPG--DEDEPELDDAGWTELLPRTK-LGPDQRH  115

Query  328  VYEGAELAAGGEDTRTFTHMKLTLIPDGGVKRFRIFGRRA  367
             +E   L       + +TH++L + PDGGV R R++GR  
Sbjct  116  FFEVDSL-----TDKRYTHVRLNIYPDGGVARLRVYGRVV  150



Lambda      K        H        a         alpha
   0.317    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00027355

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460972 pfam03561, Allantoicase, Allantoicase repeat. This fam...  219     4e-72


>CDD:460972 pfam03561, Allantoicase, Allantoicase repeat.  This family is 
found in pairs in Allantoicases, forming the majority of the 
protein. These proteins allow the use of purines as secondary 
nitrogen sources in nitrogen-limiting conditions through 
the reaction: allantoate + H(2)0 = (-)-ureidoglycolate + urea.
Length=150

 Score = 219 bits (561),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 71/160 (44%), Positives = 89/160 (56%), Gaps = 12/160 (8%)

Query  33   KILACSDEFFAAASNLLTPTPPINRPGVFVHTGAWYDGWETRRHNPEPYDWVVIKLGVAS  92
            K+L+ SDE FA A NLL P P    PG F   G   DGWETRR     +DW +I+LG   
Sbjct  3    KVLSASDEHFAPAENLLLPPPV--FPG-FTEFGGMGDGWETRRRRDPGHDWAIIRLGAP-  58

Query  93   GAIQGVEVDTGFFHGNYGEKAELQGTYAPVDSGVTDEQIADPSFNGWTTILPPQPCGPSQ  152
            G I+G+EVDT  F GNY     ++  Y P D    +   A     GWT +LP    GP Q
Sbjct  59   GVIRGIEVDTAHFKGNYPPSVSVEAAYLPGDEDEPELDDA-----GWTELLPRTKLGPDQ  113

Query  153  RRAWKLNDYDPSNPKPYTHVRLLMYPDGGFARLRLYGHAI  192
            R  ++++       K YTHVRL +YPDGG ARLR+YG  +
Sbjct  114  RHFFEVDS---LTDKRYTHVRLNIYPDGGVARLRVYGRVV  150


 Score = 181 bits (461),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 83/160 (52%), Gaps = 18/160 (11%)

Query  216  GGLALSASNQHYTPISNLILPG--------RGKDMGDGWETARSRIPGYTDWAIFQLGLP  267
            GG  LSAS++H+ P  NL+LP          G  MGDGWET R R PG+ DWAI +LG P
Sbjct  1    GGKVLSASDEHFAPAENLLLPPPVFPGFTEFGG-MGDGWETRRRRDPGH-DWAIIRLGAP  58

Query  268  GSVAKIVVDTKDFRGNFPRAVRVHGLLEGSVAAGEVPAHDHPDWIPLLSGDKFCKADTEH  327
            G +  I VDT  F+GN+P +V V           + P  D   W  LL   K    D  H
Sbjct  59   GVIRGIEVDTAHFKGNYPPSVSVEAAYLPG--DEDEPELDDAGWTELLPRTK-LGPDQRH  115

Query  328  VYEGAELAAGGEDTRTFTHMKLTLIPDGGVKRFRIFGRRA  367
             +E   L       + +TH++L + PDGGV R R++GR  
Sbjct  116  FFEVDSL-----TDKRYTHVRLNIYPDGGVARLRVYGRVV  150



Lambda      K        H        a         alpha
   0.317    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00022849

Length=1681


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2114309244


Query= TCONS_00022850

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1      469     1e-163


>CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1.  
Length=453

 Score = 469 bits (1208),  Expect = 1e-163, Method: Composition-based stats.
 Identities = 206/477 (43%), Positives = 273/477 (57%), Gaps = 31/477 (6%)

Query  9    LKGVLRRDFFHGYATAAAQVEGAWNKDGKGQSIWDTFAHTPGKVKDGSTGDDAVRSYDLY  68
            +      DF  G ATAA Q+EGAWN+DGKG SIWDTF HTPGKV  G  GD A  SY  Y
Sbjct  1    MSDTFPEDFLWGTATAAYQIEGAWNEDGKGPSIWDTFCHTPGKVFGGDNGDVACDSYHRY  60

Query  69   KEDVALMKSYGVNAYRFSLSWSRIIPLGGCDDLVNEKGIEYYSNLVDELLRNGITPFVTL  128
            KEDVAL+K  GV AYRFS+SW RI P G  +  +NE G+ YY  L+DELL  GI P VTL
Sbjct  61   KEDVALLKELGVKAYRFSISWPRIFPKGEGE--INEAGLAYYDRLIDELLAAGIEPMVTL  118

Query  129  FHWDTPQSLEDRYGGMLNQEKFVPDFVNYARVCFERLGDRVKHWITFNEPGVYTLAGYAA  188
            +HWD PQ+L+D +GG  N    +  F  YA  CF+R GDRVK+W+TFNEP   +  GY  
Sbjct  119  YHWDLPQALQD-HGGWEN-RSTIDAFKRYAETCFKRFGDRVKYWLTFNEPWCASWLGYGT  176

Query  189  GVHAPGRSSFRDRNEEGDSSTEPFIVAHTELVAHGHVSRLYKQEFQPHQQGTIGITLHGN  248
            G HAPG+               P+  AH  L+AH    +LY++       G IGI L+ +
Sbjct  177  GEHAPGKDDGE----------APYQAAHHILLAHARAVKLYREH---GPDGQIGIVLNSS  223

Query  249  WSEPWDEADPLDQAAAERAREFEIAWFADPLYKTGDYPASMRAQLGDR--LPKFTPEESK  306
            W+ P   + P D  AAERA +F   WF DP+++ GDYP  M  Q  +R  LP FT E+ +
Sbjct  224  WAYPLSPS-PEDDEAAERADQFHNGWFLDPVFR-GDYPEEMMEQFRERGGLPNFTEEDKQ  281

Query  307  LVLGSSEFYGMNSYTTFFVKHKTTPADINDHKGNVEIHDFNKHGIPRGEESDTEWLRAAP  366
            L+ G+++F G+N YT+  V++   P  I            N    P    +D  W+   P
Sbjct  282  LIKGTADFLGLNYYTSRIVRNDPGPEAIPS---YTTGIGMNSEVNPSWPSTDWGWII-YP  337

Query  367  WGFRKLLNWIWSRYQ-MPIYVTENGTTAKGETAPSPSVLNDQFRIRFFEGYVGWALARAV  425
             G R LLN +  RY   PIY+TENG   K E       +ND +RI +   ++   + +A+
Sbjct  338  EGLRDLLNRLKKRYGNPPIYITENGAGYKDEI--ENGTVNDDYRIDYLRQHLN-QVLKAI  394

Query  426  KEDGIDIRSYFAWTFTDNWEWAAGYTDRFGCTFIDFDSPEKTRYPKQSAYYLDNLFK  482
             +DG+D+R YFAW+  DN+EWA GY+ RFG   +D     + R PK+SAY+   + +
Sbjct  395  -DDGVDVRGYFAWSLMDNFEWANGYSKRFGLVHVDRFE-TQERTPKKSAYWYKEVIE  449



Lambda      K        H        a         alpha
   0.319    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 601084202


Query= TCONS_00027357

Length=745
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:405224 pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family ...  242     1e-75


>CDD:405224 pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal 
domain.  This domain represents a domain found to the 
N-terminus of the glycosyl hydrolase 65 family catalytic domain.
Length=233

 Score = 242 bits (619),  Expect = 1e-75, Method: Composition-based stats.
 Identities = 91/244 (37%), Positives = 124/244 (51%), Gaps = 14/244 (6%)

Query  5    LWYQQPAGNWEEALPVGNGRLGAMVYGRTDTEMLQLNEDSVWYGGPQNRVPHDAFECLPR  64
            LWY QPA NW EALP+GNGRLGAMV+G    E +QLNEDS+W GGP++   + A   LP 
Sbjct  1    LWYDQPATNWTEALPLGNGRLGAMVFGGVAKERIQLNEDSLWSGGPRDNNNYGAAGALPE  60

Query  65   LRSLIREGNHAEAEKLVRLAFFSHPISQRHYEPLGTLFLDFGHLPECTQNYRRSLDIERA  124
            +R+L+  G++AEAE+L           Q  Y+PLG L +D G+  + +  YRR LD+  A
Sbjct  61   IRALLFAGDYAEAERLAGKMMGGG---QGSYQPLGDLTIDSGNEGDVS-GYRRELDLSTA  116

Query  125  TTRVEYEHKGVKVRREVIASNPDSVIAIRVQASQ--KTDFTLRLTRMSELQYETNEYLDD  182
                 Y   GV   RE  AS PD V+ +R+ AS+    + T+ L             L  
Sbjct  117  IATTTYSVGGVTYTREYFASYPDQVLVVRLTASKAGSLNLTVSLETP-------LSRLAV  169

Query  183  VTTEDRTITMHITPGGHKSNRACCMVKVRTAEDQDSVTQIGNKLLV-NAQDALILISAQT  241
            VT +  T+T+         N       +R      SV   G  L V  A +  ++I+A T
Sbjct  170  VTGDGNTLTLRGQAPAGGDNGIRFEAILRVVATGGSVAVDGGTLTVEGADEVTLVIAAAT  229

Query  242  TYRC  245
             YR 
Sbjct  230  NYRG  233



Lambda      K        H        a         alpha
   0.320    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 947303952


Query= TCONS_00027358

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1      469     1e-163


>CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1.  
Length=453

 Score = 469 bits (1208),  Expect = 1e-163, Method: Composition-based stats.
 Identities = 206/477 (43%), Positives = 273/477 (57%), Gaps = 31/477 (6%)

Query  9    LKGVLRRDFFHGYATAAAQVEGAWNKDGKGQSIWDTFAHTPGKVKDGSTGDDAVRSYDLY  68
            +      DF  G ATAA Q+EGAWN+DGKG SIWDTF HTPGKV  G  GD A  SY  Y
Sbjct  1    MSDTFPEDFLWGTATAAYQIEGAWNEDGKGPSIWDTFCHTPGKVFGGDNGDVACDSYHRY  60

Query  69   KEDVALMKSYGVNAYRFSLSWSRIIPLGGCDDLVNEKGIEYYSNLVDELLRNGITPFVTL  128
            KEDVAL+K  GV AYRFS+SW RI P G  +  +NE G+ YY  L+DELL  GI P VTL
Sbjct  61   KEDVALLKELGVKAYRFSISWPRIFPKGEGE--INEAGLAYYDRLIDELLAAGIEPMVTL  118

Query  129  FHWDTPQSLEDRYGGMLNQEKFVPDFVNYARVCFERLGDRVKHWITFNEPGVYTLAGYAA  188
            +HWD PQ+L+D +GG  N    +  F  YA  CF+R GDRVK+W+TFNEP   +  GY  
Sbjct  119  YHWDLPQALQD-HGGWEN-RSTIDAFKRYAETCFKRFGDRVKYWLTFNEPWCASWLGYGT  176

Query  189  GVHAPGRSSFRDRNEEGDSSTEPFIVAHTELVAHGHVSRLYKQEFQPHQQGTIGITLHGN  248
            G HAPG+               P+  AH  L+AH    +LY++       G IGI L+ +
Sbjct  177  GEHAPGKDDGE----------APYQAAHHILLAHARAVKLYREH---GPDGQIGIVLNSS  223

Query  249  WSEPWDEADPLDQAAAERAREFEIAWFADPLYKTGDYPASMRAQLGDR--LPKFTPEESK  306
            W+ P   + P D  AAERA +F   WF DP+++ GDYP  M  Q  +R  LP FT E+ +
Sbjct  224  WAYPLSPS-PEDDEAAERADQFHNGWFLDPVFR-GDYPEEMMEQFRERGGLPNFTEEDKQ  281

Query  307  LVLGSSEFYGMNSYTTFFVKHKTTPADINDHKGNVEIHDFNKHGIPRGEESDTEWLRAAP  366
            L+ G+++F G+N YT+  V++   P  I            N    P    +D  W+   P
Sbjct  282  LIKGTADFLGLNYYTSRIVRNDPGPEAIPS---YTTGIGMNSEVNPSWPSTDWGWII-YP  337

Query  367  WGFRKLLNWIWSRYQ-MPIYVTENGTTAKGETAPSPSVLNDQFRIRFFEGYVGWALARAV  425
             G R LLN +  RY   PIY+TENG   K E       +ND +RI +   ++   + +A+
Sbjct  338  EGLRDLLNRLKKRYGNPPIYITENGAGYKDEI--ENGTVNDDYRIDYLRQHLN-QVLKAI  394

Query  426  KEDGIDIRSYFAWTFTDNWEWAAGYTDRFGCTFIDFDSPEKTRYPKQSAYYLDNLFK  482
             +DG+D+R YFAW+  DN+EWA GY+ RFG   +D     + R PK+SAY+   + +
Sbjct  395  -DDGVDVRGYFAWSLMDNFEWANGYSKRFGLVHVDRFE-TQERTPKKSAYWYKEVIE  449



Lambda      K        H        a         alpha
   0.319    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 601084202


Query= TCONS_00027359

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460972 pfam03561, Allantoicase, Allantoicase repeat. This fam...  219     4e-72


>CDD:460972 pfam03561, Allantoicase, Allantoicase repeat.  This family is 
found in pairs in Allantoicases, forming the majority of the 
protein. These proteins allow the use of purines as secondary 
nitrogen sources in nitrogen-limiting conditions through 
the reaction: allantoate + H(2)0 = (-)-ureidoglycolate + urea.
Length=150

 Score = 219 bits (561),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 71/160 (44%), Positives = 89/160 (56%), Gaps = 12/160 (8%)

Query  33   KILACSDEFFAAASNLLTPTPPINRPGVFVHTGAWYDGWETRRHNPEPYDWVVIKLGVAS  92
            K+L+ SDE FA A NLL P P    PG F   G   DGWETRR     +DW +I+LG   
Sbjct  3    KVLSASDEHFAPAENLLLPPPV--FPG-FTEFGGMGDGWETRRRRDPGHDWAIIRLGAP-  58

Query  93   GAIQGVEVDTGFFHGNYGEKAELQGTYAPVDSGVTDEQIADPSFNGWTTILPPQPCGPSQ  152
            G I+G+EVDT  F GNY     ++  Y P D    +   A     GWT +LP    GP Q
Sbjct  59   GVIRGIEVDTAHFKGNYPPSVSVEAAYLPGDEDEPELDDA-----GWTELLPRTKLGPDQ  113

Query  153  RRAWKLNDYDPSNPKPYTHVRLLMYPDGGFARLRLYGHAI  192
            R  ++++       K YTHVRL +YPDGG ARLR+YG  +
Sbjct  114  RHFFEVDS---LTDKRYTHVRLNIYPDGGVARLRVYGRVV  150


 Score = 181 bits (461),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 83/160 (52%), Gaps = 18/160 (11%)

Query  216  GGLALSASNQHYTPISNLILPG--------RGKDMGDGWETARSRIPGYTDWAIFQLGLP  267
            GG  LSAS++H+ P  NL+LP          G  MGDGWET R R PG+ DWAI +LG P
Sbjct  1    GGKVLSASDEHFAPAENLLLPPPVFPGFTEFGG-MGDGWETRRRRDPGH-DWAIIRLGAP  58

Query  268  GSVAKIVVDTKDFRGNFPRAVRVHGLLEGSVAAGEVPAHDHPDWIPLLSGDKFCKADTEH  327
            G +  I VDT  F+GN+P +V V           + P  D   W  LL   K    D  H
Sbjct  59   GVIRGIEVDTAHFKGNYPPSVSVEAAYLPG--DEDEPELDDAGWTELLPRTK-LGPDQRH  115

Query  328  VYEGAELAAGGEDTRTFTHMKLTLIPDGGVKRFRIFGRRA  367
             +E   L       + +TH++L + PDGGV R R++GR  
Sbjct  116  FFEVDSL-----TDKRYTHVRLNIYPDGGVARLRVYGRVV  150



Lambda      K        H        a         alpha
   0.317    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00027360

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460972 pfam03561, Allantoicase, Allantoicase repeat. This fam...  219     4e-72


>CDD:460972 pfam03561, Allantoicase, Allantoicase repeat.  This family is 
found in pairs in Allantoicases, forming the majority of the 
protein. These proteins allow the use of purines as secondary 
nitrogen sources in nitrogen-limiting conditions through 
the reaction: allantoate + H(2)0 = (-)-ureidoglycolate + urea.
Length=150

 Score = 219 bits (561),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 71/160 (44%), Positives = 89/160 (56%), Gaps = 12/160 (8%)

Query  33   KILACSDEFFAAASNLLTPTPPINRPGVFVHTGAWYDGWETRRHNPEPYDWVVIKLGVAS  92
            K+L+ SDE FA A NLL P P    PG F   G   DGWETRR     +DW +I+LG   
Sbjct  3    KVLSASDEHFAPAENLLLPPPV--FPG-FTEFGGMGDGWETRRRRDPGHDWAIIRLGAP-  58

Query  93   GAIQGVEVDTGFFHGNYGEKAELQGTYAPVDSGVTDEQIADPSFNGWTTILPPQPCGPSQ  152
            G I+G+EVDT  F GNY     ++  Y P D    +   A     GWT +LP    GP Q
Sbjct  59   GVIRGIEVDTAHFKGNYPPSVSVEAAYLPGDEDEPELDDA-----GWTELLPRTKLGPDQ  113

Query  153  RRAWKLNDYDPSNPKPYTHVRLLMYPDGGFARLRLYGHAI  192
            R  ++++       K YTHVRL +YPDGG ARLR+YG  +
Sbjct  114  RHFFEVDS---LTDKRYTHVRLNIYPDGGVARLRVYGRVV  150


 Score = 181 bits (461),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 83/160 (52%), Gaps = 18/160 (11%)

Query  216  GGLALSASNQHYTPISNLILPG--------RGKDMGDGWETARSRIPGYTDWAIFQLGLP  267
            GG  LSAS++H+ P  NL+LP          G  MGDGWET R R PG+ DWAI +LG P
Sbjct  1    GGKVLSASDEHFAPAENLLLPPPVFPGFTEFGG-MGDGWETRRRRDPGH-DWAIIRLGAP  58

Query  268  GSVAKIVVDTKDFRGNFPRAVRVHGLLEGSVAAGEVPAHDHPDWIPLLSGDKFCKADTEH  327
            G +  I VDT  F+GN+P +V V           + P  D   W  LL   K    D  H
Sbjct  59   GVIRGIEVDTAHFKGNYPPSVSVEAAYLPG--DEDEPELDDAGWTELLPRTK-LGPDQRH  115

Query  328  VYEGAELAAGGEDTRTFTHMKLTLIPDGGVKRFRIFGRRA  367
             +E   L       + +TH++L + PDGGV R R++GR  
Sbjct  116  FFEVDSL-----TDKRYTHVRLNIYPDGGVARLRVYGRVV  150



Lambda      K        H        a         alpha
   0.317    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00022851

Length=1567


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1992020216


Query= TCONS_00022852

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460972 pfam03561, Allantoicase, Allantoicase repeat. This fam...  219     4e-72


>CDD:460972 pfam03561, Allantoicase, Allantoicase repeat.  This family is 
found in pairs in Allantoicases, forming the majority of the 
protein. These proteins allow the use of purines as secondary 
nitrogen sources in nitrogen-limiting conditions through 
the reaction: allantoate + H(2)0 = (-)-ureidoglycolate + urea.
Length=150

 Score = 219 bits (561),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 71/160 (44%), Positives = 89/160 (56%), Gaps = 12/160 (8%)

Query  33   KILACSDEFFAAASNLLTPTPPINRPGVFVHTGAWYDGWETRRHNPEPYDWVVIKLGVAS  92
            K+L+ SDE FA A NLL P P    PG F   G   DGWETRR     +DW +I+LG   
Sbjct  3    KVLSASDEHFAPAENLLLPPPV--FPG-FTEFGGMGDGWETRRRRDPGHDWAIIRLGAP-  58

Query  93   GAIQGVEVDTGFFHGNYGEKAELQGTYAPVDSGVTDEQIADPSFNGWTTILPPQPCGPSQ  152
            G I+G+EVDT  F GNY     ++  Y P D    +   A     GWT +LP    GP Q
Sbjct  59   GVIRGIEVDTAHFKGNYPPSVSVEAAYLPGDEDEPELDDA-----GWTELLPRTKLGPDQ  113

Query  153  RRAWKLNDYDPSNPKPYTHVRLLMYPDGGFARLRLYGHAI  192
            R  ++++       K YTHVRL +YPDGG ARLR+YG  +
Sbjct  114  RHFFEVDS---LTDKRYTHVRLNIYPDGGVARLRVYGRVV  150


 Score = 181 bits (461),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 83/160 (52%), Gaps = 18/160 (11%)

Query  216  GGLALSASNQHYTPISNLILPG--------RGKDMGDGWETARSRIPGYTDWAIFQLGLP  267
            GG  LSAS++H+ P  NL+LP          G  MGDGWET R R PG+ DWAI +LG P
Sbjct  1    GGKVLSASDEHFAPAENLLLPPPVFPGFTEFGG-MGDGWETRRRRDPGH-DWAIIRLGAP  58

Query  268  GSVAKIVVDTKDFRGNFPRAVRVHGLLEGSVAAGEVPAHDHPDWIPLLSGDKFCKADTEH  327
            G +  I VDT  F+GN+P +V V           + P  D   W  LL   K    D  H
Sbjct  59   GVIRGIEVDTAHFKGNYPPSVSVEAAYLPG--DEDEPELDDAGWTELLPRTK-LGPDQRH  115

Query  328  VYEGAELAAGGEDTRTFTHMKLTLIPDGGVKRFRIFGRRA  367
             +E   L       + +TH++L + PDGGV R R++GR  
Sbjct  116  FFEVDSL-----TDKRYTHVRLNIYPDGGVARLRVYGRVV  150



Lambda      K        H        a         alpha
   0.317    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00022853

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460972 pfam03561, Allantoicase, Allantoicase repeat. This fam...  219     4e-72


>CDD:460972 pfam03561, Allantoicase, Allantoicase repeat.  This family is 
found in pairs in Allantoicases, forming the majority of the 
protein. These proteins allow the use of purines as secondary 
nitrogen sources in nitrogen-limiting conditions through 
the reaction: allantoate + H(2)0 = (-)-ureidoglycolate + urea.
Length=150

 Score = 219 bits (561),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 71/160 (44%), Positives = 89/160 (56%), Gaps = 12/160 (8%)

Query  33   KILACSDEFFAAASNLLTPTPPINRPGVFVHTGAWYDGWETRRHNPEPYDWVVIKLGVAS  92
            K+L+ SDE FA A NLL P P    PG F   G   DGWETRR     +DW +I+LG   
Sbjct  3    KVLSASDEHFAPAENLLLPPPV--FPG-FTEFGGMGDGWETRRRRDPGHDWAIIRLGAP-  58

Query  93   GAIQGVEVDTGFFHGNYGEKAELQGTYAPVDSGVTDEQIADPSFNGWTTILPPQPCGPSQ  152
            G I+G+EVDT  F GNY     ++  Y P D    +   A     GWT +LP    GP Q
Sbjct  59   GVIRGIEVDTAHFKGNYPPSVSVEAAYLPGDEDEPELDDA-----GWTELLPRTKLGPDQ  113

Query  153  RRAWKLNDYDPSNPKPYTHVRLLMYPDGGFARLRLYGHAI  192
            R  ++++       K YTHVRL +YPDGG ARLR+YG  +
Sbjct  114  RHFFEVDS---LTDKRYTHVRLNIYPDGGVARLRVYGRVV  150


 Score = 181 bits (461),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 83/160 (52%), Gaps = 18/160 (11%)

Query  216  GGLALSASNQHYTPISNLILPG--------RGKDMGDGWETARSRIPGYTDWAIFQLGLP  267
            GG  LSAS++H+ P  NL+LP          G  MGDGWET R R PG+ DWAI +LG P
Sbjct  1    GGKVLSASDEHFAPAENLLLPPPVFPGFTEFGG-MGDGWETRRRRDPGH-DWAIIRLGAP  58

Query  268  GSVAKIVVDTKDFRGNFPRAVRVHGLLEGSVAAGEVPAHDHPDWIPLLSGDKFCKADTEH  327
            G +  I VDT  F+GN+P +V V           + P  D   W  LL   K    D  H
Sbjct  59   GVIRGIEVDTAHFKGNYPPSVSVEAAYLPG--DEDEPELDDAGWTELLPRTK-LGPDQRH  115

Query  328  VYEGAELAAGGEDTRTFTHMKLTLIPDGGVKRFRIFGRRA  367
             +E   L       + +TH++L + PDGGV R R++GR  
Sbjct  116  FFEVDSL-----TDKRYTHVRLNIYPDGGVARLRVYGRVV  150



Lambda      K        H        a         alpha
   0.317    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00027362

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460972 pfam03561, Allantoicase, Allantoicase repeat. This fam...  219     4e-72


>CDD:460972 pfam03561, Allantoicase, Allantoicase repeat.  This family is 
found in pairs in Allantoicases, forming the majority of the 
protein. These proteins allow the use of purines as secondary 
nitrogen sources in nitrogen-limiting conditions through 
the reaction: allantoate + H(2)0 = (-)-ureidoglycolate + urea.
Length=150

 Score = 219 bits (561),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 71/160 (44%), Positives = 89/160 (56%), Gaps = 12/160 (8%)

Query  33   KILACSDEFFAAASNLLTPTPPINRPGVFVHTGAWYDGWETRRHNPEPYDWVVIKLGVAS  92
            K+L+ SDE FA A NLL P P    PG F   G   DGWETRR     +DW +I+LG   
Sbjct  3    KVLSASDEHFAPAENLLLPPPV--FPG-FTEFGGMGDGWETRRRRDPGHDWAIIRLGAP-  58

Query  93   GAIQGVEVDTGFFHGNYGEKAELQGTYAPVDSGVTDEQIADPSFNGWTTILPPQPCGPSQ  152
            G I+G+EVDT  F GNY     ++  Y P D    +   A     GWT +LP    GP Q
Sbjct  59   GVIRGIEVDTAHFKGNYPPSVSVEAAYLPGDEDEPELDDA-----GWTELLPRTKLGPDQ  113

Query  153  RRAWKLNDYDPSNPKPYTHVRLLMYPDGGFARLRLYGHAI  192
            R  ++++       K YTHVRL +YPDGG ARLR+YG  +
Sbjct  114  RHFFEVDS---LTDKRYTHVRLNIYPDGGVARLRVYGRVV  150


 Score = 181 bits (461),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 64/160 (40%), Positives = 83/160 (52%), Gaps = 18/160 (11%)

Query  216  GGLALSASNQHYTPISNLILPG--------RGKDMGDGWETARSRIPGYTDWAIFQLGLP  267
            GG  LSAS++H+ P  NL+LP          G  MGDGWET R R PG+ DWAI +LG P
Sbjct  1    GGKVLSASDEHFAPAENLLLPPPVFPGFTEFGG-MGDGWETRRRRDPGH-DWAIIRLGAP  58

Query  268  GSVAKIVVDTKDFRGNFPRAVRVHGLLEGSVAAGEVPAHDHPDWIPLLSGDKFCKADTEH  327
            G +  I VDT  F+GN+P +V V           + P  D   W  LL   K    D  H
Sbjct  59   GVIRGIEVDTAHFKGNYPPSVSVEAAYLPG--DEDEPELDDAGWTELLPRTK-LGPDQRH  115

Query  328  VYEGAELAAGGEDTRTFTHMKLTLIPDGGVKRFRIFGRRA  367
             +E   L       + +TH++L + PDGGV R R++GR  
Sbjct  116  FFEVDSL-----TDKRYTHVRLNIYPDGGVARLRVYGRVV  150



Lambda      K        H        a         alpha
   0.317    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00027364

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1      469     1e-163


>CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1.  
Length=453

 Score = 469 bits (1208),  Expect = 1e-163, Method: Composition-based stats.
 Identities = 206/477 (43%), Positives = 273/477 (57%), Gaps = 31/477 (6%)

Query  9    LKGVLRRDFFHGYATAAAQVEGAWNKDGKGQSIWDTFAHTPGKVKDGSTGDDAVRSYDLY  68
            +      DF  G ATAA Q+EGAWN+DGKG SIWDTF HTPGKV  G  GD A  SY  Y
Sbjct  1    MSDTFPEDFLWGTATAAYQIEGAWNEDGKGPSIWDTFCHTPGKVFGGDNGDVACDSYHRY  60

Query  69   KEDVALMKSYGVNAYRFSLSWSRIIPLGGCDDLVNEKGIEYYSNLVDELLRNGITPFVTL  128
            KEDVAL+K  GV AYRFS+SW RI P G  +  +NE G+ YY  L+DELL  GI P VTL
Sbjct  61   KEDVALLKELGVKAYRFSISWPRIFPKGEGE--INEAGLAYYDRLIDELLAAGIEPMVTL  118

Query  129  FHWDTPQSLEDRYGGMLNQEKFVPDFVNYARVCFERLGDRVKHWITFNEPGVYTLAGYAA  188
            +HWD PQ+L+D +GG  N    +  F  YA  CF+R GDRVK+W+TFNEP   +  GY  
Sbjct  119  YHWDLPQALQD-HGGWEN-RSTIDAFKRYAETCFKRFGDRVKYWLTFNEPWCASWLGYGT  176

Query  189  GVHAPGRSSFRDRNEEGDSSTEPFIVAHTELVAHGHVSRLYKQEFQPHQQGTIGITLHGN  248
            G HAPG+               P+  AH  L+AH    +LY++       G IGI L+ +
Sbjct  177  GEHAPGKDDGE----------APYQAAHHILLAHARAVKLYREH---GPDGQIGIVLNSS  223

Query  249  WSEPWDEADPLDQAAAERAREFEIAWFADPLYKTGDYPASMRAQLGDR--LPKFTPEESK  306
            W+ P   + P D  AAERA +F   WF DP+++ GDYP  M  Q  +R  LP FT E+ +
Sbjct  224  WAYPLSPS-PEDDEAAERADQFHNGWFLDPVFR-GDYPEEMMEQFRERGGLPNFTEEDKQ  281

Query  307  LVLGSSEFYGMNSYTTFFVKHKTTPADINDHKGNVEIHDFNKHGIPRGEESDTEWLRAAP  366
            L+ G+++F G+N YT+  V++   P  I            N    P    +D  W+   P
Sbjct  282  LIKGTADFLGLNYYTSRIVRNDPGPEAIPS---YTTGIGMNSEVNPSWPSTDWGWII-YP  337

Query  367  WGFRKLLNWIWSRYQ-MPIYVTENGTTAKGETAPSPSVLNDQFRIRFFEGYVGWALARAV  425
             G R LLN +  RY   PIY+TENG   K E       +ND +RI +   ++   + +A+
Sbjct  338  EGLRDLLNRLKKRYGNPPIYITENGAGYKDEI--ENGTVNDDYRIDYLRQHLN-QVLKAI  394

Query  426  KEDGIDIRSYFAWTFTDNWEWAAGYTDRFGCTFIDFDSPEKTRYPKQSAYYLDNLFK  482
             +DG+D+R YFAW+  DN+EWA GY+ RFG   +D     + R PK+SAY+   + +
Sbjct  395  -DDGVDVRGYFAWSLMDNFEWANGYSKRFGLVHVDRFE-TQERTPKKSAYWYKEVIE  449



Lambda      K        H        a         alpha
   0.319    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 601084202


Query= TCONS_00027363

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1      469     1e-163


>CDD:395176 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1.  
Length=453

 Score = 469 bits (1208),  Expect = 1e-163, Method: Composition-based stats.
 Identities = 206/477 (43%), Positives = 273/477 (57%), Gaps = 31/477 (6%)

Query  9    LKGVLRRDFFHGYATAAAQVEGAWNKDGKGQSIWDTFAHTPGKVKDGSTGDDAVRSYDLY  68
            +      DF  G ATAA Q+EGAWN+DGKG SIWDTF HTPGKV  G  GD A  SY  Y
Sbjct  1    MSDTFPEDFLWGTATAAYQIEGAWNEDGKGPSIWDTFCHTPGKVFGGDNGDVACDSYHRY  60

Query  69   KEDVALMKSYGVNAYRFSLSWSRIIPLGGCDDLVNEKGIEYYSNLVDELLRNGITPFVTL  128
            KEDVAL+K  GV AYRFS+SW RI P G  +  +NE G+ YY  L+DELL  GI P VTL
Sbjct  61   KEDVALLKELGVKAYRFSISWPRIFPKGEGE--INEAGLAYYDRLIDELLAAGIEPMVTL  118

Query  129  FHWDTPQSLEDRYGGMLNQEKFVPDFVNYARVCFERLGDRVKHWITFNEPGVYTLAGYAA  188
            +HWD PQ+L+D +GG  N    +  F  YA  CF+R GDRVK+W+TFNEP   +  GY  
Sbjct  119  YHWDLPQALQD-HGGWEN-RSTIDAFKRYAETCFKRFGDRVKYWLTFNEPWCASWLGYGT  176

Query  189  GVHAPGRSSFRDRNEEGDSSTEPFIVAHTELVAHGHVSRLYKQEFQPHQQGTIGITLHGN  248
            G HAPG+               P+  AH  L+AH    +LY++       G IGI L+ +
Sbjct  177  GEHAPGKDDGE----------APYQAAHHILLAHARAVKLYREH---GPDGQIGIVLNSS  223

Query  249  WSEPWDEADPLDQAAAERAREFEIAWFADPLYKTGDYPASMRAQLGDR--LPKFTPEESK  306
            W+ P   + P D  AAERA +F   WF DP+++ GDYP  M  Q  +R  LP FT E+ +
Sbjct  224  WAYPLSPS-PEDDEAAERADQFHNGWFLDPVFR-GDYPEEMMEQFRERGGLPNFTEEDKQ  281

Query  307  LVLGSSEFYGMNSYTTFFVKHKTTPADINDHKGNVEIHDFNKHGIPRGEESDTEWLRAAP  366
            L+ G+++F G+N YT+  V++   P  I            N    P    +D  W+   P
Sbjct  282  LIKGTADFLGLNYYTSRIVRNDPGPEAIPS---YTTGIGMNSEVNPSWPSTDWGWII-YP  337

Query  367  WGFRKLLNWIWSRYQ-MPIYVTENGTTAKGETAPSPSVLNDQFRIRFFEGYVGWALARAV  425
             G R LLN +  RY   PIY+TENG   K E       +ND +RI +   ++   + +A+
Sbjct  338  EGLRDLLNRLKKRYGNPPIYITENGAGYKDEI--ENGTVNDDYRIDYLRQHLN-QVLKAI  394

Query  426  KEDGIDIRSYFAWTFTDNWEWAAGYTDRFGCTFIDFDSPEKTRYPKQSAYYLDNLFK  482
             +DG+D+R YFAW+  DN+EWA GY+ RFG   +D     + R PK+SAY+   + +
Sbjct  395  -DDGVDVRGYFAWSLMDNFEWANGYSKRFGLVHVDRFE-TQERTPKKSAYWYKEVIE  449



Lambda      K        H        a         alpha
   0.319    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 601084202


Query= TCONS_00022854

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00027369

Length=774
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  176     4e-51
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.6    1e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 176 bits (448),  Expect = 4e-51, Method: Composition-based stats.
 Identities = 80/277 (29%), Positives = 119/277 (43%), Gaps = 63/277 (23%)

Query  269  FSFGQTLGEGSYSTVVLATDRQTLKEYAIKILDKRHIIKEKKVKYVNIEKDTLNRLTEHP  328
            +   + LG GS+ TV  A  R T K  AIK + K  I K+KK K +  E   L +L  HP
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKI-KKKKDKNILREIKILKKL-NHP  58

Query  329  GIVRLYYTFQDERSLYFVLDLCKGGELLGVLKRMTTFDEECTRFYGAQILDTIDYMHKRG  388
             IVRLY  F+D+ +LY VL+  +GG L  +L     F E   +F   QIL+ ++      
Sbjct  59   NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES-----  113

Query  389  VIHRDLKPENVLLDSQMYIKITDFGTAKILNNQKKTDQNSSGMPPLDSSEIPEDERASSF  448
                                                                     ++F
Sbjct  114  -----------------------------------------------------GSSLTTF  120

Query  449  VGTAEYVSPELLTDKNACKASDLWAFGCIIYQLLAGRPPFKAANEYLTFQKIVALEYEFP  508
            VGT  Y++PE+L         D+W+ GCI+Y+LL G+PPF   N    ++ I+   Y FP
Sbjct  121  VGTPWYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFP  180

Query  509  VGFPTV---ARDLVERLLVLEPARRLPIEHIKNHEFF  542
                 +   A+DL+++LL  +P++RL       H +F
Sbjct  181  ELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.6 bits (218),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 57/242 (24%)

Query  269  FSFGQTLGEGSYSTVVLAT----DRQTLKEYAIKILDKRHIIKEKKVKYVNIEKDTLN--  322
             + G+ LGEG++  V   T       T  + A+K L +    +E++        D L   
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERE--------DFLEEA  52

Query  323  ---RLTEHPGIVRLYYTFQDERSLYFVLDLCKGGELLGVLKRMTTFDEECTRF-------  372
               +  +HP IV+L         LY V +   GG+LL  L++         +        
Sbjct  53   SIMKKLDHPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR------KLTLKDLLS  106

Query  373  YGAQILDTIDYMHKRGVIHRDLKPENVLLDSQMYIKITDFGTAK-ILNNQKKTDQNSSGM  431
               QI   ++Y+  +  +HRDL   N L+   + +KI+DFG ++ I ++     +    +
Sbjct  107  MALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKL  166

Query  432  PPLDSSEIPEDERASSFVGTAEYVSPELLTDKNACK---ASDLWAFGCIIYQLLA-GRPP  487
            P      I              +++PE L D    K    SD+W+FG +++++   G  P
Sbjct  167  P------IK-------------WMAPESLKD---GKFTSKSDVWSFGVLLWEIFTLGEQP  204

Query  488  FK  489
            + 
Sbjct  205  YP  206



Lambda      K        H        a         alpha
   0.313    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 989503360


Query= TCONS_00022856

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core...  100     3e-25


>CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain 
(G, H, P, S and T).  tRNA-synt_2b is a family of largely threonyl-tRNA 
members.
Length=181

 Score = 100 bits (251),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 30/205 (15%)

Query  286  KDKSKPQRSLTGTAEIPLAAMYAGRDLDASSLPLKLVGASRCYRAEAGSRGVDTKGLYRV  345
            +D++  + +L  T E     ++    L +  LPLKL     C+R EA     DT+GL RV
Sbjct  4    EDENGDELALKPTNEPGHTLLFREEGLRSKDLPLKLAQFGTCFRHEASG---DTRGLIRV  60

Query  346  HEFTKVEL--FGWADTLPATISSDNLFTELLDIQTEILTALNLPCRVLEMPTTDLGASAS  403
             +F + +   F      P  +       + + +   + + L L  RV+ +  +D  A   
Sbjct  61   RQFHQDDAHIFHAPGQSPDELE------DYIKLIDRVYSRLGLEVRVVRLSNSDGSAFYG  114

Query  404  RKRDIEALFPSRLRVPGSSSGSGSSSPDLESGWGEVTSASICTDYQSRRLGTRVRGGSAK  463
             K D E +FPS                 L     +  +         RRLG R +     
Sbjct  115  PKLDFEVVFPS-----------------LGKQR-QTGTIQNDGFRLPRRLGIRYKD-EDN  155

Query  464  ESRFPHTVNGTAMAVPRVLAAILEN  488
            ES+FP+ ++   + V R LAAILEN
Sbjct  156  ESKFPYMIHRAGLGVERFLAAILEN  180



Lambda      K        H        a         alpha
   0.314    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00022858

Length=238


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00027371

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core...  100     3e-25


>CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain 
(G, H, P, S and T).  tRNA-synt_2b is a family of largely threonyl-tRNA 
members.
Length=181

 Score = 100 bits (251),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 30/205 (15%)

Query  286  KDKSKPQRSLTGTAEIPLAAMYAGRDLDASSLPLKLVGASRCYRAEAGSRGVDTKGLYRV  345
            +D++  + +L  T E     ++    L +  LPLKL     C+R EA     DT+GL RV
Sbjct  4    EDENGDELALKPTNEPGHTLLFREEGLRSKDLPLKLAQFGTCFRHEASG---DTRGLIRV  60

Query  346  HEFTKVEL--FGWADTLPATISSDNLFTELLDIQTEILTALNLPCRVLEMPTTDLGASAS  403
             +F + +   F      P  +       + + +   + + L L  RV+ +  +D  A   
Sbjct  61   RQFHQDDAHIFHAPGQSPDELE------DYIKLIDRVYSRLGLEVRVVRLSNSDGSAFYG  114

Query  404  RKRDIEALFPSRLRVPGSSSGSGSSSPDLESGWGEVTSASICTDYQSRRLGTRVRGGSAK  463
             K D E +FPS                 L     +  +         RRLG R +     
Sbjct  115  PKLDFEVVFPS-----------------LGKQR-QTGTIQNDGFRLPRRLGIRYKD-EDN  155

Query  464  ESRFPHTVNGTAMAVPRVLAAILEN  488
            ES+FP+ ++   + V R LAAILEN
Sbjct  156  ESKFPYMIHRAGLGVERFLAAILEN  180



Lambda      K        H        a         alpha
   0.314    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00022859

Length=624
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  100     3e-23


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 100 bits (250),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 136/430 (32%), Gaps = 89/430 (21%)

Query  160  FYILHFNQHLVSYLALYSDVRNPYRD--LTFLVGDSPVLAHALAATGALHHAILRNLEFS  217
              + ++  ++   L+ + +  NP+R   L   + +  +L HAL A  A H          
Sbjct  1    ELLDYYLDNVSPLLSPFPESSNPFRKVLLPLALSNPALL-HALLALSAFHLQSS------  53

Query  218  LPWSPDTAGDGGTALSPEEVERAVISSMARRPSSKDYEHFLGFKQRALRQLSLDICDPIM  277
                      G   L   E +R                    +K  ALR L   + +   
Sbjct  54   ----------GPPDLWEREAQR--------------------YKSLALRLLQRALAELSS  83

Query  278  RNDNR-----TLAAIMVLALMDAIESGDGAWKYHLEGAKKLLKSRQ-QSESPTQAQGMMN  331
            R  +       LAAI++L   +        W+ HLEGAK L++ R   S++ +    ++ 
Sbjct  84   RLSSNSKYDDVLAAILLLCSFEISSGDVSDWRVHLEGAKDLIRLRGGPSKTSSGLSSLLR  143

Query  332  WLDTFAIDGCLLIQLMGS-TLARPGSLTQPFYSSTMGPAVLKRLEET-SWVGCPAYLLEV  389
            +L            ++ S T  R  S     Y    G  +          +GC   L  +
Sbjct  144  FLLRN----FAYHDILSSTTTGRGPSFPSEEYLDLFGDELELGSSGLDPLMGCSNSLFLL  199

Query  390  IFFVEAGHFMAPGKDPFSQHTTSFSSVFLPDDSKPLQSPEALLGHIQAF--DPVAWAESM  447
            I                    +  +       S     P   L   Q       +W    
Sbjct  200  IS-----------------EISDLAREKRSLRSDNELLPLEFLSRAQELEQRLSSWEPRS  242

Query  448  QSCLYLEDLSMRITLATIYKAAVYLYASRVLSRPQSQRNYMVTTSFRLPPDHGAITNLLI  507
                   D    ++   +    +Y  A+ +         Y+      LPP    +  L+ 
Sbjct  243  DDLEIPLDGEDPLSELLLTLTELYRLAALI---------YLYRRILGLPPSSPEVQELVS  293

Query  508  HQIALIPVADPH---FKCLIWPTFIAGAECRDPAHRPFLLEKLRTLYYDVTSVNVRNAAW  564
              + L+ +          L+WP FIAG E  D   R F+L++L +L        + N   
Sbjct  294  KLLELLDLLPDSPLAISSLLWPLFIAGCEAVDDDDRDFVLDRLDSLEKS----RLGNVRR  349

Query  565  VLSLM---WR  571
               ++   W+
Sbjct  350  AREILEEVWK  359



Lambda      K        H        a         alpha
   0.321    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 795035696


Query= TCONS_00022860

Length=774
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  176     4e-51
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.6    1e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 176 bits (448),  Expect = 4e-51, Method: Composition-based stats.
 Identities = 80/277 (29%), Positives = 119/277 (43%), Gaps = 63/277 (23%)

Query  269  FSFGQTLGEGSYSTVVLATDRQTLKEYAIKILDKRHIIKEKKVKYVNIEKDTLNRLTEHP  328
            +   + LG GS+ TV  A  R T K  AIK + K  I K+KK K +  E   L +L  HP
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKI-KKKKDKNILREIKILKKL-NHP  58

Query  329  GIVRLYYTFQDERSLYFVLDLCKGGELLGVLKRMTTFDEECTRFYGAQILDTIDYMHKRG  388
             IVRLY  F+D+ +LY VL+  +GG L  +L     F E   +F   QIL+ ++      
Sbjct  59   NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES-----  113

Query  389  VIHRDLKPENVLLDSQMYIKITDFGTAKILNNQKKTDQNSSGMPPLDSSEIPEDERASSF  448
                                                                     ++F
Sbjct  114  -----------------------------------------------------GSSLTTF  120

Query  449  VGTAEYVSPELLTDKNACKASDLWAFGCIIYQLLAGRPPFKAANEYLTFQKIVALEYEFP  508
            VGT  Y++PE+L         D+W+ GCI+Y+LL G+PPF   N    ++ I+   Y FP
Sbjct  121  VGTPWYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFP  180

Query  509  VGFPTV---ARDLVERLLVLEPARRLPIEHIKNHEFF  542
                 +   A+DL+++LL  +P++RL       H +F
Sbjct  181  ELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.6 bits (218),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 57/242 (24%)

Query  269  FSFGQTLGEGSYSTVVLAT----DRQTLKEYAIKILDKRHIIKEKKVKYVNIEKDTLN--  322
             + G+ LGEG++  V   T       T  + A+K L +    +E++        D L   
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERE--------DFLEEA  52

Query  323  ---RLTEHPGIVRLYYTFQDERSLYFVLDLCKGGELLGVLKRMTTFDEECTRF-------  372
               +  +HP IV+L         LY V +   GG+LL  L++         +        
Sbjct  53   SIMKKLDHPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR------KLTLKDLLS  106

Query  373  YGAQILDTIDYMHKRGVIHRDLKPENVLLDSQMYIKITDFGTAK-ILNNQKKTDQNSSGM  431
               QI   ++Y+  +  +HRDL   N L+   + +KI+DFG ++ I ++     +    +
Sbjct  107  MALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKL  166

Query  432  PPLDSSEIPEDERASSFVGTAEYVSPELLTDKNACK---ASDLWAFGCIIYQLLA-GRPP  487
            P      I              +++PE L D    K    SD+W+FG +++++   G  P
Sbjct  167  P------IK-------------WMAPESLKD---GKFTSKSDVWSFGVLLWEIFTLGEQP  204

Query  488  FK  489
            + 
Sbjct  205  YP  206



Lambda      K        H        a         alpha
   0.313    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 989503360


Query= TCONS_00022861

Length=774
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  176     4e-51
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.6    1e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 176 bits (448),  Expect = 4e-51, Method: Composition-based stats.
 Identities = 80/277 (29%), Positives = 119/277 (43%), Gaps = 63/277 (23%)

Query  269  FSFGQTLGEGSYSTVVLATDRQTLKEYAIKILDKRHIIKEKKVKYVNIEKDTLNRLTEHP  328
            +   + LG GS+ TV  A  R T K  AIK + K  I K+KK K +  E   L +L  HP
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKI-KKKKDKNILREIKILKKL-NHP  58

Query  329  GIVRLYYTFQDERSLYFVLDLCKGGELLGVLKRMTTFDEECTRFYGAQILDTIDYMHKRG  388
             IVRLY  F+D+ +LY VL+  +GG L  +L     F E   +F   QIL+ ++      
Sbjct  59   NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES-----  113

Query  389  VIHRDLKPENVLLDSQMYIKITDFGTAKILNNQKKTDQNSSGMPPLDSSEIPEDERASSF  448
                                                                     ++F
Sbjct  114  -----------------------------------------------------GSSLTTF  120

Query  449  VGTAEYVSPELLTDKNACKASDLWAFGCIIYQLLAGRPPFKAANEYLTFQKIVALEYEFP  508
            VGT  Y++PE+L         D+W+ GCI+Y+LL G+PPF   N    ++ I+   Y FP
Sbjct  121  VGTPWYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFP  180

Query  509  VGFPTV---ARDLVERLLVLEPARRLPIEHIKNHEFF  542
                 +   A+DL+++LL  +P++RL       H +F
Sbjct  181  ELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.6 bits (218),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 57/242 (24%)

Query  269  FSFGQTLGEGSYSTVVLAT----DRQTLKEYAIKILDKRHIIKEKKVKYVNIEKDTLN--  322
             + G+ LGEG++  V   T       T  + A+K L +    +E++        D L   
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERE--------DFLEEA  52

Query  323  ---RLTEHPGIVRLYYTFQDERSLYFVLDLCKGGELLGVLKRMTTFDEECTRF-------  372
               +  +HP IV+L         LY V +   GG+LL  L++         +        
Sbjct  53   SIMKKLDHPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR------KLTLKDLLS  106

Query  373  YGAQILDTIDYMHKRGVIHRDLKPENVLLDSQMYIKITDFGTAK-ILNNQKKTDQNSSGM  431
               QI   ++Y+  +  +HRDL   N L+   + +KI+DFG ++ I ++     +    +
Sbjct  107  MALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKL  166

Query  432  PPLDSSEIPEDERASSFVGTAEYVSPELLTDKNACK---ASDLWAFGCIIYQLLA-GRPP  487
            P      I              +++PE L D    K    SD+W+FG +++++   G  P
Sbjct  167  P------IK-------------WMAPESLKD---GKFTSKSDVWSFGVLLWEIFTLGEQP  204

Query  488  FK  489
            + 
Sbjct  205  YP  206



Lambda      K        H        a         alpha
   0.313    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 989503360


Query= TCONS_00022862

Length=774
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  176     4e-51
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.6    1e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 176 bits (448),  Expect = 4e-51, Method: Composition-based stats.
 Identities = 80/277 (29%), Positives = 119/277 (43%), Gaps = 63/277 (23%)

Query  269  FSFGQTLGEGSYSTVVLATDRQTLKEYAIKILDKRHIIKEKKVKYVNIEKDTLNRLTEHP  328
            +   + LG GS+ TV  A  R T K  AIK + K  I K+KK K +  E   L +L  HP
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKI-KKKKDKNILREIKILKKL-NHP  58

Query  329  GIVRLYYTFQDERSLYFVLDLCKGGELLGVLKRMTTFDEECTRFYGAQILDTIDYMHKRG  388
             IVRLY  F+D+ +LY VL+  +GG L  +L     F E   +F   QIL+ ++      
Sbjct  59   NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES-----  113

Query  389  VIHRDLKPENVLLDSQMYIKITDFGTAKILNNQKKTDQNSSGMPPLDSSEIPEDERASSF  448
                                                                     ++F
Sbjct  114  -----------------------------------------------------GSSLTTF  120

Query  449  VGTAEYVSPELLTDKNACKASDLWAFGCIIYQLLAGRPPFKAANEYLTFQKIVALEYEFP  508
            VGT  Y++PE+L         D+W+ GCI+Y+LL G+PPF   N    ++ I+   Y FP
Sbjct  121  VGTPWYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFP  180

Query  509  VGFPTV---ARDLVERLLVLEPARRLPIEHIKNHEFF  542
                 +   A+DL+++LL  +P++RL       H +F
Sbjct  181  ELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.6 bits (218),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 57/242 (24%)

Query  269  FSFGQTLGEGSYSTVVLAT----DRQTLKEYAIKILDKRHIIKEKKVKYVNIEKDTLN--  322
             + G+ LGEG++  V   T       T  + A+K L +    +E++        D L   
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERE--------DFLEEA  52

Query  323  ---RLTEHPGIVRLYYTFQDERSLYFVLDLCKGGELLGVLKRMTTFDEECTRF-------  372
               +  +HP IV+L         LY V +   GG+LL  L++         +        
Sbjct  53   SIMKKLDHPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR------KLTLKDLLS  106

Query  373  YGAQILDTIDYMHKRGVIHRDLKPENVLLDSQMYIKITDFGTAK-ILNNQKKTDQNSSGM  431
               QI   ++Y+  +  +HRDL   N L+   + +KI+DFG ++ I ++     +    +
Sbjct  107  MALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKL  166

Query  432  PPLDSSEIPEDERASSFVGTAEYVSPELLTDKNACK---ASDLWAFGCIIYQLLA-GRPP  487
            P      I              +++PE L D    K    SD+W+FG +++++   G  P
Sbjct  167  P------IK-------------WMAPESLKD---GKFTSKSDVWSFGVLLWEIFTLGEQP  204

Query  488  FK  489
            + 
Sbjct  205  YP  206



Lambda      K        H        a         alpha
   0.313    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0756    0.140     1.90     42.6     43.6 

Effective search space used: 989503360


Query= TCONS_00022863

Length=774
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  176     4e-51
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            87.6    1e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 176 bits (448),  Expect = 4e-51, Method: Composition-based stats.
 Identities = 80/277 (29%), Positives = 119/277 (43%), Gaps = 63/277 (23%)

Query  269  FSFGQTLGEGSYSTVVLATDRQTLKEYAIKILDKRHIIKEKKVKYVNIEKDTLNRLTEHP  328
            +   + LG GS+ TV  A  R T K  AIK + K  I K+KK K +  E   L +L  HP
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKI-KKKKDKNILREIKILKKL-NHP  58

Query  329  GIVRLYYTFQDERSLYFVLDLCKGGELLGVLKRMTTFDEECTRFYGAQILDTIDYMHKRG  388
             IVRLY  F+D+ +LY VL+  +GG L  +L     F E   +F   QIL+ ++      
Sbjct  59   NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGLES-----  113

Query  389  VIHRDLKPENVLLDSQMYIKITDFGTAKILNNQKKTDQNSSGMPPLDSSEIPEDERASSF  448
                                                                     ++F
Sbjct  114  -----------------------------------------------------GSSLTTF  120

Query  449  VGTAEYVSPELLTDKNACKASDLWAFGCIIYQLLAGRPPFKAANEYLTFQKIVALEYEFP  508
            VGT  Y++PE+L         D+W+ GCI+Y+LL G+PPF   N    ++ I+   Y FP
Sbjct  121  VGTPWYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFP  180

Query  509  VGFPTV---ARDLVERLLVLEPARRLPIEHIKNHEFF  542
                 +   A+DL+++LL  +P++RL       H +F
Sbjct  181  ELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 87.6 bits (218),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 57/242 (24%)

Query  269  FSFGQTLGEGSYSTVVLAT----DRQTLKEYAIKILDKRHIIKEKKVKYVNIEKDTLN--  322
             + G+ LGEG++  V   T       T  + A+K L +    +E++        D L   
Sbjct  1    LTLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERE--------DFLEEA  52

Query  323  ---RLTEHPGIVRLYYTFQDERSLYFVLDLCKGGELLGVLKRMTTFDEECTRF-------  372
               +  +HP IV+L         LY V +   GG+LL  L++         +        
Sbjct  53   SIMKKLDHPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR------KLTLKDLLS  106

Query  373  YGAQILDTIDYMHKRGVIHRDLKPENVLLDSQMYIKITDFGTAK-ILNNQKKTDQNSSGM  431
               QI   ++Y+  +  +HRDL   N L+   + +KI+DFG ++ I ++     +    +
Sbjct  107  MALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKL  166

Query  432  PPLDSSEIPEDERASSFVGTAEYVSPELLTDKNACK---ASDLWAFGCIIYQLLA-GRPP  487
            P      I              +++PE L D    K    SD+W+FG +++++   G  P
Sbjct  167  P------IK-------------WMAPESLKD---GKFTSKSDVWSFGVLLWEIFTLGEQP  204

Query  488  FK  489
            + 
Sbjct  205  YP  206



Lambda      K        H        a         alpha
   0.313    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 989503360


Query= TCONS_00022866

Length=582


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 732269720


Query= TCONS_00022867

Length=581


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00022865

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00022864

Length=345


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00022868

Length=345


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00022869

Length=248


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00022870

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00022871

Length=256


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00022872

Length=361


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00022874

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:308657 pfam03151, TPT, Triose-phosphate Transporter family. T...  66.9    5e-13


>CDD:308657 pfam03151, TPT, Triose-phosphate Transporter family.  This family 
includes transporters with a specificity for triose phosphate.
Length=290

 Score = 66.9 bits (164),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 142/296 (48%), Gaps = 18/296 (6%)

Query  41   AVYVSLWIALSSSVILFNKHILDYAQFRFPIILTTWHLAFATFMTQVLARTTTLLDGRKT  100
             +   LW  L+    ++NK IL+   F +P+ +++  L   +    VL  T      RK 
Sbjct  4    GLLFGLWYFLNIYFNIYNKKILNA--FPYPMTVSSVQLFVGSVYILVLWGT----GLRKR  57

Query  101  VKMTGRVYLRAIVPIGLFFSLSLICGNVTYLYLSVAFIQMLKATTPV-AVLLATWAMGMA  159
             K++   +L+ I+P+ L  +L  +  NV+   ++V+F   +KA  P   V+L+   +G  
Sbjct  58   PKISSP-FLKNILPLALCHTLGHVLANVSLGKVAVSFTHTVKAMEPFFTVILSRLFLGEY  116

Query  160  PVNLKVLFNVAVIVIGVVIASFGEIKFVFIGFLFQIGGIVFEATRLVMVQRLLSSAE---  216
            P  L V  ++  IV GV +AS  E+ F +IGF+  +   +  + R +  ++L+   +   
Sbjct  117  P-PLLVYLSLLPIVGGVALASVTELSFNWIGFISAMISNLGFSLRNIFSKKLMKGKDNLD  175

Query  217  ----FKMDPLVSLYYFAPVCAVMNGVTALFVEVPNLTMGHIYNVGIWTLLANAVVAFLLN  272
                F +  ++SL    PV  ++ G    F  +       + +V    LL + V   L N
Sbjct  176  NLNLFAIITILSLLLLLPVWLLVEGF-KKFPSLLQSGKVGLKDV-YMLLLLSGVCFHLYN  233

Query  273  VSVVFLIGKTSSLVMTLCGVLKDILLVAASMMIWQTPVTPLQFFGYSIALIGLVYY  328
                 ++ + S +  ++   +K ++++ +S++++  PV+PL   G +IA+ G+  Y
Sbjct  234  QVAYMILERVSPVTHSVANTVKRVVVIVSSILVFGNPVSPLNAIGTAIAIAGVFLY  289



Lambda      K        H        a         alpha
   0.326    0.139    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00022873

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:308657 pfam03151, TPT, Triose-phosphate Transporter family. T...  61.5    4e-11


>CDD:308657 pfam03151, TPT, Triose-phosphate Transporter family.  This family 
includes transporters with a specificity for triose phosphate.
Length=290

 Score = 61.5 bits (150),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 70/296 (24%), Positives = 140/296 (47%), Gaps = 18/296 (6%)

Query  41   AVYVSLWIALSSSVILFNKHILDYAQFRPAIILTTWHLAFATFMTQVLARTTTLLDGRKT  100
             +   LW  L+    ++NK IL+   +   + +++  L   +    VL  T      RK 
Sbjct  4    GLLFGLWYFLNIYFNIYNKKILNAFPY--PMTVSSVQLFVGSVYILVLWGT----GLRKR  57

Query  101  VKMTGRVYLRAIVPIGLFFSLSLICGNVTYLYLSVAFIQMLKATTPV-AVLLATWAMGMA  159
             K++   +L+ I+P+ L  +L  +  NV+   ++V+F   +KA  P   V+L+   +G  
Sbjct  58   PKISSP-FLKNILPLALCHTLGHVLANVSLGKVAVSFTHTVKAMEPFFTVILSRLFLGEY  116

Query  160  PVNLKVLFNVAVIVIGVVIASFGEIKFVFIGFLFQIGGIVFEATRLVMVQRLLSSAE---  216
            P  L V  ++  IV GV +AS  E+ F +IGF+  +   +  + R +  ++L+   +   
Sbjct  117  P-PLLVYLSLLPIVGGVALASVTELSFNWIGFISAMISNLGFSLRNIFSKKLMKGKDNLD  175

Query  217  ----FKMDPLVSLYYFAPVCAVMNGVTALFVEVPNLTMGHIYNVGIWTLLANAVVAFLLN  272
                F +  ++SL    PV  ++ G    F  +       + +V    LL + V   L N
Sbjct  176  NLNLFAIITILSLLLLLPVWLLVEGF-KKFPSLLQSGKVGLKDV-YMLLLLSGVCFHLYN  233

Query  273  VSVVFLIGKTSSLVMTLCGVLKDILLVAASMMIWQTPVTPLQFFGYSIALIGLVYY  328
                 ++ + S +  ++   +K ++++ +S++++  PV+PL   G +IA+ G+  Y
Sbjct  234  QVAYMILERVSPVTHSVANTVKRVVVIVSSILVFGNPVSPLNAIGTAIAIAGVFLY  289



Lambda      K        H        a         alpha
   0.326    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00027372

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:308657 pfam03151, TPT, Triose-phosphate Transporter family. T...  69.6    7e-14


>CDD:308657 pfam03151, TPT, Triose-phosphate Transporter family.  This family 
includes transporters with a specificity for triose phosphate.
Length=290

 Score = 69.6 bits (171),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 141/294 (48%), Gaps = 16/294 (5%)

Query  41   AVYVSLWIALSSSVILFNKHILDYAQFPIILTTWHLAFATFMTQVLARTTTLLDGRKTVK  100
             +   LW  L+    ++NK IL+   +P+ +++  L   +    VL  T      RK  K
Sbjct  4    GLLFGLWYFLNIYFNIYNKKILNAFPYPMTVSSVQLFVGSVYILVLWGT----GLRKRPK  59

Query  101  MTGRVYLRAIVPIGLFFSLSLICGNVTYLYLSVAFIQMLKATTPV-AVLLATWAMGMAPV  159
            ++   +L+ I+P+ L  +L  +  NV+   ++V+F   +KA  P   V+L+   +G  P 
Sbjct  60   ISSP-FLKNILPLALCHTLGHVLANVSLGKVAVSFTHTVKAMEPFFTVILSRLFLGEYP-  117

Query  160  NLKVLFNVAVIVIGVVIASFGEIKFVFIGFLFQIGGIVFEATRLVMVQRLLSSAE-----  214
             L V  ++  IV GV +AS  E+ F +IGF+  +   +  + R +  ++L+   +     
Sbjct  118  PLLVYLSLLPIVGGVALASVTELSFNWIGFISAMISNLGFSLRNIFSKKLMKGKDNLDNL  177

Query  215  --FKMDPLVSLYYFAPVCAVMNGVTALFVEVPNLTMGHIYNVGIWTLLANAVVAFLLNVS  272
              F +  ++SL    PV  ++ G    F  +       + +V    LL + V   L N  
Sbjct  178  NLFAIITILSLLLLLPVWLLVEGF-KKFPSLLQSGKVGLKDV-YMLLLLSGVCFHLYNQV  235

Query  273  VVFLIGKTSSLVMTLCGVLKDILLVAASMMIWQTPVTPLQFFGYSIALIGLVYY  326
               ++ + S +  ++   +K ++++ +S++++  PV+PL   G +IA+ G+  Y
Sbjct  236  AYMILERVSPVTHSVANTVKRVVVIVSSILVFGNPVSPLNAIGTAIAIAGVFLY  289



Lambda      K        H        a         alpha
   0.326    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00022878

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:308657 pfam03151, TPT, Triose-phosphate Transporter family. T...  61.5    4e-11


>CDD:308657 pfam03151, TPT, Triose-phosphate Transporter family.  This family 
includes transporters with a specificity for triose phosphate.
Length=290

 Score = 61.5 bits (150),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 70/296 (24%), Positives = 140/296 (47%), Gaps = 18/296 (6%)

Query  41   AVYVSLWIALSSSVILFNKHILDYAQFRPAIILTTWHLAFATFMTQVLARTTTLLDGRKT  100
             +   LW  L+    ++NK IL+   +   + +++  L   +    VL  T      RK 
Sbjct  4    GLLFGLWYFLNIYFNIYNKKILNAFPY--PMTVSSVQLFVGSVYILVLWGT----GLRKR  57

Query  101  VKMTGRVYLRAIVPIGLFFSLSLICGNVTYLYLSVAFIQMLKATTPV-AVLLATWAMGMA  159
             K++   +L+ I+P+ L  +L  +  NV+   ++V+F   +KA  P   V+L+   +G  
Sbjct  58   PKISSP-FLKNILPLALCHTLGHVLANVSLGKVAVSFTHTVKAMEPFFTVILSRLFLGEY  116

Query  160  PVNLKVLFNVAVIVIGVVIASFGEIKFVFIGFLFQIGGIVFEATRLVMVQRLLSSAE---  216
            P  L V  ++  IV GV +AS  E+ F +IGF+  +   +  + R +  ++L+   +   
Sbjct  117  P-PLLVYLSLLPIVGGVALASVTELSFNWIGFISAMISNLGFSLRNIFSKKLMKGKDNLD  175

Query  217  ----FKMDPLVSLYYFAPVCAVMNGVTALFVEVPNLTMGHIYNVGIWTLLANAVVAFLLN  272
                F +  ++SL    PV  ++ G    F  +       + +V    LL + V   L N
Sbjct  176  NLNLFAIITILSLLLLLPVWLLVEGF-KKFPSLLQSGKVGLKDV-YMLLLLSGVCFHLYN  233

Query  273  VSVVFLIGKTSSLVMTLCGVLKDILLVAASMMIWQTPVTPLQFFGYSIALIGLVYY  328
                 ++ + S +  ++   +K ++++ +S++++  PV+PL   G +IA+ G+  Y
Sbjct  234  QVAYMILERVSPVTHSVANTVKRVVVIVSSILVFGNPVSPLNAIGTAIAIAGVFLY  289



Lambda      K        H        a         alpha
   0.326    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00027373

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00022876

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00022875

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00022877

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:308657 pfam03151, TPT, Triose-phosphate Transporter family. T...  66.9    5e-13


>CDD:308657 pfam03151, TPT, Triose-phosphate Transporter family.  This family 
includes transporters with a specificity for triose phosphate.
Length=290

 Score = 66.9 bits (164),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 142/296 (48%), Gaps = 18/296 (6%)

Query  41   AVYVSLWIALSSSVILFNKHILDYAQFRFPIILTTWHLAFATFMTQVLARTTTLLDGRKT  100
             +   LW  L+    ++NK IL+   F +P+ +++  L   +    VL  T      RK 
Sbjct  4    GLLFGLWYFLNIYFNIYNKKILNA--FPYPMTVSSVQLFVGSVYILVLWGT----GLRKR  57

Query  101  VKMTGRVYLRAIVPIGLFFSLSLICGNVTYLYLSVAFIQMLKATTPV-AVLLATWAMGMA  159
             K++   +L+ I+P+ L  +L  +  NV+   ++V+F   +KA  P   V+L+   +G  
Sbjct  58   PKISSP-FLKNILPLALCHTLGHVLANVSLGKVAVSFTHTVKAMEPFFTVILSRLFLGEY  116

Query  160  PVNLKVLFNVAVIVIGVVIASFGEIKFVFIGFLFQIGGIVFEATRLVMVQRLLSSAE---  216
            P  L V  ++  IV GV +AS  E+ F +IGF+  +   +  + R +  ++L+   +   
Sbjct  117  P-PLLVYLSLLPIVGGVALASVTELSFNWIGFISAMISNLGFSLRNIFSKKLMKGKDNLD  175

Query  217  ----FKMDPLVSLYYFAPVCAVMNGVTALFVEVPNLTMGHIYNVGIWTLLANAVVAFLLN  272
                F +  ++SL    PV  ++ G    F  +       + +V    LL + V   L N
Sbjct  176  NLNLFAIITILSLLLLLPVWLLVEGF-KKFPSLLQSGKVGLKDV-YMLLLLSGVCFHLYN  233

Query  273  VSVVFLIGKTSSLVMTLCGVLKDILLVAASMMIWQTPVTPLQFFGYSIALIGLVYY  328
                 ++ + S +  ++   +K ++++ +S++++  PV+PL   G +IA+ G+  Y
Sbjct  234  QVAYMILERVSPVTHSVANTVKRVVVIVSSILVFGNPVSPLNAIGTAIAIAGVFLY  289



Lambda      K        H        a         alpha
   0.326    0.139    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00022880

Length=317


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00027374

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.146    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00022881

Length=384


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00022882

Length=384


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00027375

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462250 pfam07741, BRF1, Brf1-like TBP-binding domain. This re...  118     7e-33


>CDD:462250 pfam07741, BRF1, Brf1-like TBP-binding domain.  This region covers 
both the Brf homology II and III regions. This region 
is involved in binding TATA binding protein.
Length=98

 Score = 118 bits (298),  Expect = 7e-33, Method: Composition-based stats.
 Identities = 50/115 (43%), Positives = 66/115 (57%), Gaps = 17/115 (15%)

Query  225  SEFEDDPEVANCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAEADSQPGMRKPRK  284
            S+ +DD E+ N +LS  EV+IKERIWV  NKDYL  Q  K LK   AEA  +P  ++ RK
Sbjct  1    SDLDDD-ELDNYILSEEEVKIKERIWVELNKDYLEEQAEKRLKAEAAEAAGKPKKKRKRK  59

Query  285  RRRGRLGDVTYLEGDGEDADGRSTRASTPAEATRRMLERRGFSKKINYRLLESLF  339
            ++  +                    AST AEA + ML+++ FSKKINY  L+SLF
Sbjct  60   KKEKK----------------NIGPASTAAEAAKNMLKKKKFSKKINYDALKSLF  98



Lambda      K        H        a         alpha
   0.308    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00022884

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00027376

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426945 pfam02732, ERCC4, ERCC4 domain. This domain is a famil...  97.5    5e-26


>CDD:426945 pfam02732, ERCC4, ERCC4 domain.  This domain is a family of nucleases. 
The family includes EME1 which is an essential component 
of a Holliday junction resolvase. EME1 interacts with 
MUS81 to form a DNA structure-specific endonuclease.
Length=139

 Score = 97.5 bits (243),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 59/117 (50%), Gaps = 11/117 (9%)

Query  1    MWVARCNDPTFLSQYGEECNEVMLDWIVERKRMDDLLGSIKDGRFHEQKFRLRRSGIKNV  60
            +WV R  D            EV+LD IVERK +DDL+ SI DGR  EQK RL+R G K  
Sbjct  33   LWVPREYDLE---------LEVVLDVIVERKSLDDLVSSIIDGRLFEQKSRLKR-GYKKP  82

Query  61   IYLIEEFAITHDVGSASAMKY-QEMMASAIASTQVVNGYFVKQTRNLDDTIRYLARM  116
            I L+E   +                +  A+AS QV  G  + +TR+ ++T  +LA +
Sbjct  83   ILLVEGLDLFSRKLKNKRRDINPNAIEGALASLQVDYGVRIIRTRSAEETAEWLASL  139



Lambda      K        H        a         alpha
   0.322    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00022890

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426945 pfam02732, ERCC4, ERCC4 domain. This domain is a famil...  97.5    5e-26


>CDD:426945 pfam02732, ERCC4, ERCC4 domain.  This domain is a family of nucleases. 
The family includes EME1 which is an essential component 
of a Holliday junction resolvase. EME1 interacts with 
MUS81 to form a DNA structure-specific endonuclease.
Length=139

 Score = 97.5 bits (243),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 59/117 (50%), Gaps = 11/117 (9%)

Query  1    MWVARCNDPTFLSQYGEECNEVMLDWIVERKRMDDLLGSIKDGRFHEQKFRLRRSGIKNV  60
            +WV R  D            EV+LD IVERK +DDL+ SI DGR  EQK RL+R G K  
Sbjct  33   LWVPREYDLE---------LEVVLDVIVERKSLDDLVSSIIDGRLFEQKSRLKR-GYKKP  82

Query  61   IYLIEEFAITHDVGSASAMKY-QEMMASAIASTQVVNGYFVKQTRNLDDTIRYLARM  116
            I L+E   +                +  A+AS QV  G  + +TR+ ++T  +LA +
Sbjct  83   ILLVEGLDLFSRKLKNKRRDINPNAIEGALASLQVDYGVRIIRTRSAEETAEWLASL  139



Lambda      K        H        a         alpha
   0.322    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00022885

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426945 pfam02732, ERCC4, ERCC4 domain. This domain is a famil...  97.5    5e-26


>CDD:426945 pfam02732, ERCC4, ERCC4 domain.  This domain is a family of nucleases. 
The family includes EME1 which is an essential component 
of a Holliday junction resolvase. EME1 interacts with 
MUS81 to form a DNA structure-specific endonuclease.
Length=139

 Score = 97.5 bits (243),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 59/117 (50%), Gaps = 11/117 (9%)

Query  1    MWVARCNDPTFLSQYGEECNEVMLDWIVERKRMDDLLGSIKDGRFHEQKFRLRRSGIKNV  60
            +WV R  D            EV+LD IVERK +DDL+ SI DGR  EQK RL+R G K  
Sbjct  33   LWVPREYDLE---------LEVVLDVIVERKSLDDLVSSIIDGRLFEQKSRLKR-GYKKP  82

Query  61   IYLIEEFAITHDVGSASAMKY-QEMMASAIASTQVVNGYFVKQTRNLDDTIRYLARM  116
            I L+E   +                +  A+AS QV  G  + +TR+ ++T  +LA +
Sbjct  83   ILLVEGLDLFSRKLKNKRRDINPNAIEGALASLQVDYGVRIIRTRSAEETAEWLASL  139



Lambda      K        H        a         alpha
   0.322    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0602    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00022886

Length=1190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      173     5e-50
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  71.5    2e-14
CDD:459804 pfam00403, HMA, Heavy-metal-associated domain              62.6    7e-13


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 173 bits (440),  Expect = 5e-50, Method: Composition-based stats.
 Identities = 71/184 (39%), Positives = 97/184 (53%), Gaps = 16/184 (9%)

Query  594  NQQRIAVDLLEIGDVVSIPHGASPPADGVIIGPNTYQFDESSLTGESRWVRKSAGDQVFT  653
             ++ +  D L  GD+V +  G   PADG I+  +    DES LTGES  V K  GD V++
Sbjct  14   TEEEVPADELVPGDIVLLKPGERVPADGRIVEGSA-SVDESLLTGESLPVEKKKGDMVYS  72

Query  654  GSVNVGQPVKIKITALGGSSMLDQIINVVREGQSRRAPLERVADVLTSHFVPVITLIAIL  713
            G+V V    K  +TA G  + L +I  +V E +S++ PL+R+ D L  +F PV+ LIA+ 
Sbjct  73   GTVVVSGSAKAVVTATGEDTELGRIARLVEEAKSKKTPLQRLLDRLGKYFSPVVLLIALA  132

Query  714  TFLIWLSLGLSGALPPDYLDTARGGWAFWSLEFAIAVFVVACPCGLALAAPTALFVGGGL  773
             FL+WL                 GG    +L  A+AV V ACPC L LA P AL VG   
Sbjct  133  VFLLWLF---------------VGGPPLRALLRALAVLVAACPCALPLATPLALAVGARR  177

Query  774  AARH  777
             A+ 
Sbjct  178  LAKK  181


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 71.5 bits (175),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 55/278 (20%), Positives = 92/278 (33%), Gaps = 96/278 (35%)

Query  794   LNAIVFDKTGTLTEGGSLKVSDHEVLATDADQIQVAWKLAQQLEESSNHPIAQAVSAFCK  853
             + A+VFD  GTLT+G                 +  A         +S HP+A+A+ A  +
Sbjct  1     IKAVVFDLDGTLTDG--------------EPVVTEAIAEL-----ASEHPLAKAIVAAAE  41

Query  854   GRSEIPVAASDIVEKSGRGMMGTFTISINDPASNSSTTVVYEAAIGNEALLQSLTSAVDT  913
                ++P+   D   +                             +G    L+ L      
Sbjct  42    ---DLPIPVEDFTARLL---------------------------LGKRDWLEELDI----  67

Query  914   YRLSGLLEEYQSAGKSTAILSLRKIDPTSPDKPSFTPAIVFAATDAIRPQASEIISRLRK  973
               L GL+E  ++ G +  ++ L  +             I  A    + P A+E +  L++
Sbjct  68    --LRGLVETLEAEGLTVVLVELLGV-------------IALADELKLYPGAAEALKALKE  112

Query  974   RDVDVFMCTGDNQTTAYAVADVVGIPR---------SNVMANVMPAGKADFVRKVQAGLY  1024
             R + V + TGDN   A A+  ++G+              +    P      + ++     
Sbjct  113   RGIKVAILTGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIYLAALERLGV---  169

Query  1025  PVRNEDDAESQTNRSGSRPIVAFVGDGVNDSPALAAAD  1062
                                 V  VGDGVND PA  AA 
Sbjct  170   --------------KPEE--VLMVGDGVNDIPAAKAAG  191


>CDD:459804 pfam00403, HMA, Heavy-metal-associated domain.  
Length=58

 Score = 62.6 bits (153),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 0/58 (0%)

Query  143  RISIGGMTCASCVNTVTKEVQQLDFVREVTVNLLTNSATLRYTGPQTNIDKIVDLIED  200
               + GM C  C   V K + +L  V  V+V+L T + T+      T ++K+V+ IE 
Sbjct  1    TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58



Lambda      K        H        a         alpha
   0.318    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1526088134


Query= TCONS_00027377

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426945 pfam02732, ERCC4, ERCC4 domain. This domain is a famil...  97.5    5e-26


>CDD:426945 pfam02732, ERCC4, ERCC4 domain.  This domain is a family of nucleases. 
The family includes EME1 which is an essential component 
of a Holliday junction resolvase. EME1 interacts with 
MUS81 to form a DNA structure-specific endonuclease.
Length=139

 Score = 97.5 bits (243),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 59/117 (50%), Gaps = 11/117 (9%)

Query  1    MWVARCNDPTFLSQYGEECNEVMLDWIVERKRMDDLLGSIKDGRFHEQKFRLRRSGIKNV  60
            +WV R  D            EV+LD IVERK +DDL+ SI DGR  EQK RL+R G K  
Sbjct  33   LWVPREYDLE---------LEVVLDVIVERKSLDDLVSSIIDGRLFEQKSRLKR-GYKKP  82

Query  61   IYLIEEFAITHDVGSASAMKY-QEMMASAIASTQVVNGYFVKQTRNLDDTIRYLARM  116
            I L+E   +                +  A+AS QV  G  + +TR+ ++T  +LA +
Sbjct  83   ILLVEGLDLFSRKLKNKRRDINPNAIEGALASLQVDYGVRIIRTRSAEETAEWLASL  139



Lambda      K        H        a         alpha
   0.322    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00022887

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426945 pfam02732, ERCC4, ERCC4 domain. This domain is a famil...  97.5    5e-26


>CDD:426945 pfam02732, ERCC4, ERCC4 domain.  This domain is a family of nucleases. 
The family includes EME1 which is an essential component 
of a Holliday junction resolvase. EME1 interacts with 
MUS81 to form a DNA structure-specific endonuclease.
Length=139

 Score = 97.5 bits (243),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 59/117 (50%), Gaps = 11/117 (9%)

Query  1    MWVARCNDPTFLSQYGEECNEVMLDWIVERKRMDDLLGSIKDGRFHEQKFRLRRSGIKNV  60
            +WV R  D            EV+LD IVERK +DDL+ SI DGR  EQK RL+R G K  
Sbjct  33   LWVPREYDLE---------LEVVLDVIVERKSLDDLVSSIIDGRLFEQKSRLKR-GYKKP  82

Query  61   IYLIEEFAITHDVGSASAMKY-QEMMASAIASTQVVNGYFVKQTRNLDDTIRYLARM  116
            I L+E   +                +  A+AS QV  G  + +TR+ ++T  +LA +
Sbjct  83   ILLVEGLDLFSRKLKNKRRDINPNAIEGALASLQVDYGVRIIRTRSAEETAEWLASL  139



Lambda      K        H        a         alpha
   0.322    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00022888

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426945 pfam02732, ERCC4, ERCC4 domain. This domain is a famil...  97.5    5e-26


>CDD:426945 pfam02732, ERCC4, ERCC4 domain.  This domain is a family of nucleases. 
The family includes EME1 which is an essential component 
of a Holliday junction resolvase. EME1 interacts with 
MUS81 to form a DNA structure-specific endonuclease.
Length=139

 Score = 97.5 bits (243),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 43/117 (37%), Positives = 59/117 (50%), Gaps = 11/117 (9%)

Query  1    MWVARCNDPTFLSQYGEECNEVMLDWIVERKRMDDLLGSIKDGRFHEQKFRLRRSGIKNV  60
            +WV R  D            EV+LD IVERK +DDL+ SI DGR  EQK RL+R G K  
Sbjct  33   LWVPREYDLE---------LEVVLDVIVERKSLDDLVSSIIDGRLFEQKSRLKR-GYKKP  82

Query  61   IYLIEEFAITHDVGSASAMKY-QEMMASAIASTQVVNGYFVKQTRNLDDTIRYLARM  116
            I L+E   +                +  A+AS QV  G  + +TR+ ++T  +LA +
Sbjct  83   ILLVEGLDLFSRKLKNKRRDINPNAIEGALASLQVDYGVRIIRTRSAEETAEWLASL  139



Lambda      K        H        a         alpha
   0.322    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00022889

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00027378

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF32...  829     0.0  


>CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF3292).  This 
eukaryotic family of proteins has no known function.
Length=648

 Score = 829 bits (2143),  Expect = 0.0, Method: Composition-based stats.
 Identities = 291/519 (56%), Positives = 363/519 (70%), Gaps = 17/519 (3%)

Query  9    VYSVAWLLDFLVPTLFGTMLVLVVWPQSRKVLFPPAPLALVDKSTGGVQKPKAGVLGSHD  68
            VY VAWLLD LVPTL   ++ L+++P SR++LFPPAPLALVD  TGGVQKPKAGVLGSHD
Sbjct  133  VYFVAWLLDLLVPTLVAFLIALILYPPSREILFPPAPLALVDSKTGGVQKPKAGVLGSHD  192

Query  69   SVTGAPEKYKGEAAEQEASNLIASVATVAVGSAAGKHDQGTPEDA-PMESSVPDAMDIVS  127
            S TGAPE +KGEA EQEASN + S+A+VA+ SAAGKH QG P+DA  M+ SVPD   + +
Sbjct  193  SATGAPENHKGEAVEQEASNFVNSIASVAISSAAGKHPQGDPDDAEGMDDSVPDPTALAT  252

Query  128  KTADAQAAAGGEVPADTHDKTRQPMKETVLNGANLAMRVLSDIIDTYERFGNALSPTPPF  187
              ADA+  A G  P  +HDKT+ PM+  V +     M  +SDI DT+ERF NALSPTPPF
Sbjct  253  SAADAKDKAAGGKPDPSHDKTKVPMETAVWSKMRPVMHAISDITDTWERFANALSPTPPF  312

Query  188  PASTPCLRLSSVLVAGFLGSLPTSSYVFVKLGTFLFGFVFFGDPVLQRFINYLNHAFPHW  247
            P  TP LRL++VL+   L SL TSSY+F+K  TF  GF FFGDP++ R + +LN  +P+W
Sbjct  313  PQDTPRLRLAAVLLPLLLISLFTSSYMFIKGVTFGVGFGFFGDPIITRGLAWLNRKYPNW  372

Query  248  QKLLNLQNSLLKRVPTNAQLTLTLLRIGESNAAPLPPPPSSSLHKAPSRPAPIH------  301
            QKLL L+N+LLK VPTNAQLT+TLLRIGE+N A   PPP SS    P +PA +       
Sbjct  373  QKLLELRNTLLKGVPTNAQLTITLLRIGEANKA-PLPPPPSSTEPPPDKPADLTDDDLRA  431

Query  302  --HDQLALGASTEEISRAAAPEPKQDAAQEPHKD---EEPKKKSLGARIVGFFKGTTATG  356
                   LGAS EEI  A AP+P+  A +    D   E+ KKK  G++I+GFFKGTT  G
Sbjct  432  SAGADEPLGASDEEIDEAIAPDPEAAATKHEEIDADKEKKKKKKKGSKILGFFKGTTKGG  491

Query  357  IEAKLAVDRVRAQAGSTHAKNHVGILRKKGEETLPYGPVEFDARYKGKRGNVVIDSSKQP  416
            ++  L  DR +A+AGS HAKN +G+L KK       GPVEFDARYKGK+G+V I SS  P
Sbjct  492  VKTALGADRAKAKAGSEHAKNRLGVLPKKKTAPQTSGPVEFDARYKGKKGHVYITSSATP  551

Query  417  PLLYFTTDPTVIQGDYRLDSRKKGTVLFTIPVTEIQEMRKIGGMGWKGKLAAGWAVGCKE  476
            P+L FTTD      D RL+SR+    L+TIPV +I+E++K+GG+GWKGKL  GWA+  +E
Sbjct  552  PVLSFTTDAG--LDDLRLESREDLHPLWTIPVADIKELKKVGGLGWKGKLVVGWALE-RE  608

Query  477  VVDGLVIIGEHPHDSYQLTAMSTRNELFNRLVAIDGQFW  515
            V DGLVI+ + P  SY LTAM  R+ELFNRL+A+ GQ W
Sbjct  609  VADGLVIVDK-PGQSYHLTAMPLRDELFNRLIAMGGQKW  646



Lambda      K        H        a         alpha
   0.316    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00022891

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF32...  832     0.0  


>CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF3292).  This 
eukaryotic family of proteins has no known function.
Length=648

 Score = 832 bits (2152),  Expect = 0.0, Method: Composition-based stats.
 Identities = 293/521 (56%), Positives = 365/521 (70%), Gaps = 17/521 (3%)

Query  9    VYSVAWLLDFLVPTLFGTMLVLVVWPQSRKVLFPPAPLALVDKSTGGVQKPKAGVLGSHD  68
            VY VAWLLD LVPTL   ++ L+++P SR++LFPPAPLALVD  TGGVQKPKAGVLGSHD
Sbjct  133  VYFVAWLLDLLVPTLVAFLIALILYPPSREILFPPAPLALVDSKTGGVQKPKAGVLGSHD  192

Query  69   SVTGAPEKYKGEAAEQEASNLIASVATVAVGSAAGKHDQGTPEDA-PMESSVPDAMDIVS  127
            S TGAPE +KGEA EQEASN + S+A+VA+ SAAGKH QG P+DA  M+ SVPD   + +
Sbjct  193  SATGAPENHKGEAVEQEASNFVNSIASVAISSAAGKHPQGDPDDAEGMDDSVPDPTALAT  252

Query  128  KTADAQAAAGGEVPADTHDKTRQPMKETVLNGANLAMRVLSDIIDTYERFGNALSPTPPF  187
              ADA+  A G  P  +HDKT+ PM+  V +     M  +SDI DT+ERF NALSPTPPF
Sbjct  253  SAADAKDKAAGGKPDPSHDKTKVPMETAVWSKMRPVMHAISDITDTWERFANALSPTPPF  312

Query  188  PASTPCLRLSSVLVAGFLGSLPTSSYVFVKLGTFLFGFVFFGDPVLQRFINYLNHAFPHW  247
            P  TP LRL++VL+   L SL TSSY+F+K  TF  GF FFGDP++ R + +LN  +P+W
Sbjct  313  PQDTPRLRLAAVLLPLLLISLFTSSYMFIKGVTFGVGFGFFGDPIITRGLAWLNRKYPNW  372

Query  248  QKLLNLQNSLLKRVPTNAQLTLTLLRIGESNAAPLPPPPSSSLHKAPSRPAPIH------  301
            QKLL L+N+LLK VPTNAQLT+TLLRIGE+N A   PPP SS    P +PA +       
Sbjct  373  QKLLELRNTLLKGVPTNAQLTITLLRIGEANKA-PLPPPPSSTEPPPDKPADLTDDDLRA  431

Query  302  --HDQLALGASTEEISRAAAPEPKQDAAQEPHKD---EEPKKKSLGARIVGFFKGTTATG  356
                   LGAS EEI  A AP+P+  A +    D   E+ KKK  G++I+GFFKGTT  G
Sbjct  432  SAGADEPLGASDEEIDEAIAPDPEAAATKHEEIDADKEKKKKKKKGSKILGFFKGTTKGG  491

Query  357  IEAKLAVDRVRAQAGSTHAKNHVGILRKKGEETLPYGPVEFDARYKGKRGNVVIDSSKQP  416
            ++  L  DR +A+AGS HAKN +G+L KK       GPVEFDARYKGK+G+V I SS  P
Sbjct  492  VKTALGADRAKAKAGSEHAKNRLGVLPKKKTAPQTSGPVEFDARYKGKKGHVYITSSATP  551

Query  417  PLLYFTTDPTVIQGDYRLDSRKKGTVLFTIPVTEIQEMRKIGGMGWKGKLAAGWAVGCKE  476
            P+L FTTD      D RL+SR+    L+TIPV +I+E++K+GG+GWKGKL  GWA+  +E
Sbjct  552  PVLSFTTDAG--LDDLRLESREDLHPLWTIPVADIKELKKVGGLGWKGKLVVGWALE-RE  608

Query  477  VVDGLVIIGEHPHDSYQLTAMSTRNELFNRLVAIDGQVWES  517
            V DGLVI+ + P  SY LTAM  R+ELFNRL+A+ GQ WES
Sbjct  609  VADGLVIVDK-PGQSYHLTAMPLRDELFNRLIAMGGQKWES  648



Lambda      K        H        a         alpha
   0.316    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00022892

Length=682
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF32...  1080    0.0  


>CDD:432008 pfam11696, DUF3292, Protein of unknown function (DUF3292).  This 
eukaryotic family of proteins has no known function.
Length=648

 Score = 1080 bits (2795),  Expect = 0.0, Method: Composition-based stats.
 Identities = 386/660 (58%), Positives = 470/660 (71%), Gaps = 25/660 (4%)

Query  35   PTDSHVLSQVKPEEEDRGLAQKAGVTNDVSDIGWGES-DKIEERIVTGLSNEDLWMLIRR  93
            PTDSH L+Q    EE +G AQKA  T +V D+GW ES D I E +V GLSNEDLWMLIRR
Sbjct  1    PTDSHALAQEDVHEE-KGAAQKAHHTTEVKDLGWNESPDNIPEPLVGGLSNEDLWMLIRR  59

Query  94   FNKQIYCVKAVPNPPLQRLDLNRAEDENFSPDKLRATLERFYTTVVIGLTSLVKHIARLR  153
            FNKQIY VKA+P+PPL  LDLN A++E FSPDKLRA LER Y TV++GL +  KHIARLR
Sbjct  60   FNKQIYHVKAIPDPPLGGLDLNIADEEEFSPDKLRANLERLYMTVIVGLIAFWKHIARLR  119

Query  154  SWREPRRTAAFCATEQYIQVYSVAWLLDFLVPTLFGTMLVLVVWPQSRKVLFPPAPLALV  213
            SWREPRRTAAFCA      VY VAWLLD LVPTL   ++ L+++P SR++LFPPAPLALV
Sbjct  120  SWREPRRTAAFCA------VYFVAWLLDLLVPTLVAFLIALILYPPSREILFPPAPLALV  173

Query  214  DKSTGGVQKPKAGVLGSHDSVTGAPEKYKGEAAEQEASNLIASVATVAVGSAAGKHDQGT  273
            D  TGGVQKPKAGVLGSHDS TGAPE +KGEA EQEASN + S+A+VA+ SAAGKH QG 
Sbjct  174  DSKTGGVQKPKAGVLGSHDSATGAPENHKGEAVEQEASNFVNSIASVAISSAAGKHPQGD  233

Query  274  PEDA-PMESSVPDAMDIVSKTADAQAAAGGEVPADTHDKTRQPMKETVLNGANLAMRVLS  332
            P+DA  M+ SVPD   + +  ADA+  A G  P  +HDKT+ PM+  V +     M  +S
Sbjct  234  PDDAEGMDDSVPDPTALATSAADAKDKAAGGKPDPSHDKTKVPMETAVWSKMRPVMHAIS  293

Query  333  DIIDTYERFGNALSPTPPFPASTPCLRLSSVLVAGFLGSLPTSSYVFVKLGTFLFGFVFF  392
            DI DT+ERF NALSPTPPFP  TP LRL++VL+   L SL TSSY+F+K  TF  GF FF
Sbjct  294  DITDTWERFANALSPTPPFPQDTPRLRLAAVLLPLLLISLFTSSYMFIKGVTFGVGFGFF  353

Query  393  GDPVLQRFINYLNHAFPHWQKLLNLQNSLLKRVPTNAQLTLTLLRIGESNAAPLPPPPSS  452
            GDP++ R + +LN  +P+WQKLL L+N+LLK VPTNAQLT+TLLRIGE+N A   PPP S
Sbjct  354  GDPIITRGLAWLNRKYPNWQKLLELRNTLLKGVPTNAQLTITLLRIGEANKA-PLPPPPS  412

Query  453  SLHKAPSRPAPIH--------HDQLALGASTEEISRAAAPEPKQDAAQEPHKD---EEPK  501
            S    P +PA +              LGAS EEI  A AP+P+  A +    D   E+ K
Sbjct  413  STEPPPDKPADLTDDDLRASAGADEPLGASDEEIDEAIAPDPEAAATKHEEIDADKEKKK  472

Query  502  KKSLGARIVGFFKGTTATGIEAKLAVDRVRAQAGSTHAKNHVGILRKKGEETLPYGPVEF  561
            KK  G++I+GFFKGTT  G++  L  DR +A+AGS HAKN +G+L KK       GPVEF
Sbjct  473  KKKKGSKILGFFKGTTKGGVKTALGADRAKAKAGSEHAKNRLGVLPKKKTAPQTSGPVEF  532

Query  562  DARYKGKRGNVVIDSSKQPPLLYFTTDPTVIQGDYRLDSRKKGTVLFTIPVTEIQEMRKI  621
            DARYKGK+G+V I SS  PP+L FTTD      D RL+SR+    L+TIPV +I+E++K+
Sbjct  533  DARYKGKKGHVYITSSATPPVLSFTTDAG--LDDLRLESREDLHPLWTIPVADIKELKKV  590

Query  622  GGMGWKGKLAAGWAVGCKEVVDGLVIIGEHPHDSYQLTAMSTRNELFNRLVAIDGQVWES  681
            GG+GWKGKL  GWA+  +EV DGLVI+ + P  SY LTAM  R+ELFNRL+A+ GQ WES
Sbjct  591  GGLGWKGKLVVGWALE-REVADGLVIVDK-PGQSYHLTAMPLRDELFNRLIAMGGQKWES  648



Lambda      K        H        a         alpha
   0.316    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 868651310


Query= TCONS_00022894

Length=458


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 564403072


Query= TCONS_00027379

Length=514


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00022893

Length=670


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 850953830


Query= TCONS_00022895

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00027380

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.293    0.105    0.259    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00022897

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.295    0.108    0.269    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00022896

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401292 pfam09295, ChAPs, ChAPs (Chs5p-Arf1p-binding proteins)...  304     2e-103


>CDD:401292 pfam09295, ChAPs, ChAPs (Chs5p-Arf1p-binding proteins).  ChAPs 
(Chs5p-Arf1p-binding proteins) are required for the export 
of specialized cargo from the Golgi. They physically interact 
with Chs3, Chs5 and the small GTPase Arf1, and they form 
also interactions with each other.
Length=395

 Score = 304 bits (781),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 102/184 (55%), Positives = 127/184 (69%), Gaps = 5/184 (3%)

Query  1    MADEEVQAVRLMYDALQDVPMDYALLDCQAAFCMSKGEGELALECAKRAVTAAPSEFSTW  60
            + DEE+ AV+LM DALQ+ PMD  LL  QA F +SK   ELALECAKRAV +APSEF TW
Sbjct  212  LMDEEIDAVKLMNDALQENPMDAELLCLQAEFLLSKKRYELALECAKRAVNSAPSEFKTW  271

Query  61   ARLAEVYVSLEQWDLALLTLNSCPMFTYQDKDTPRMPQPSR----IMLPILAESILDEID  116
            A L +VY+ L  W+ ALLTLNSCPMFTY++K   R P P++    + LP+  + +LDE+ 
Sbjct  272  ALLVKVYIKLGDWENALLTLNSCPMFTYKEKYVLRRPVPAKSNNNLHLPLPLDVVLDEVT  331

Query  117  EGQPKQ-GDPHDYIHPSLRKLHAASYQGTFLKAYNLLTKIAASIGWDQLLKIRSEVFVME  175
                    + H  + PSL  L AA+ + TF KAY LLT+I A IGW+QLLK RS+VFVME
Sbjct  332  NLNSSDVTEEHKSVDPSLLNLPAANLKSTFAKAYELLTEIVAKIGWEQLLKYRSKVFVME  391

Query  176  EEYR  179
            EEYR
Sbjct  392  EEYR  395



Lambda      K        H        a         alpha
   0.312    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00027381

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00027382

Length=1445


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1826470852


Query= TCONS_00022899

Length=2019


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2527321748


Query= TCONS_00022900

Length=1532


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0758    0.140     1.90     42.6     43.6 

Effective search space used: 1944526546


Query= TCONS_00022901

Length=2019


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2527321748


Query= TCONS_00027383

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00027384

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00027385

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  129     1e-37


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 129 bits (328),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 57/207 (28%), Positives = 91/207 (44%), Gaps = 13/207 (6%)

Query  2    RTIGAFGHWDDLSIFIASNVLLLVGPPVYEGANFFTLGRLLYYV-PYHSPIHPGRVFSTF  60
            R +    +   L  FI   VLLL+ P     A + TLGR++  +    S + P      F
Sbjct  15   RILSHN-NPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRALGESLSRLRPRWYTWIF  73

Query  61   VALGIVIEVITANGASLVANTGNSISKQNTGKALLKAALILQIALMAGFVALAIKFYFNC  120
            V   ++  V+ A G  L A + +S S+  TG+ ++ A L  Q+A +  F+ LA  F+   
Sbjct  74   VTGDVLSLVLQAAGGGLAA-SADSSSEAKTGENIMIAGLAFQVAFLGIFIILAADFHRRV  132

Query  121  RRGGVLSNKVKRP-LYVLLCSCTLITVRTIYRTVEYFTAASLNIYNVSDLSPILKDEWFF  179
            RR  +  ++  +  L  L  +  LI +R+IYR  E                 ++  E +F
Sbjct  133  RRSTLRLSRRWKLFLLALYAASLLILIRSIYRVAELAQGWD---------GYLMTHEVYF  183

Query  180  WVFETAVMFTNTTLLNVLHPMQWLPRS  206
            +V +  +M     LLNV HP    P  
Sbjct  184  YVLDGLMMLLAVVLLNVFHPGFLFPGR  210



Lambda      K        H        a         alpha
   0.324    0.141    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00022902

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  135     4e-39


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 135 bits (343),  Expect = 4e-39, Method: Composition-based stats.
 Identities = 60/215 (28%), Positives = 95/215 (44%), Gaps = 13/215 (6%)

Query  59   LFTAGFIMRTIGAFGHWDDLSIFIASNVLLLVGPPVYEGANFFTLGRLLYYV-PYHSPIH  117
            L   G+I R +    +   L  FI   VLLL+ P     A + TLGR++  +    S + 
Sbjct  7    LEVIGYIGRILSHN-NPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRALGESLSRLR  65

Query  118  PGRVFSTFVALGIVIEVITANGASLVANTGNSISKQNTGKALLKAALILQIALMAGFVAL  177
            P      FV   ++  V+ A G  L A + +S S+  TG+ ++ A L  Q+A +  F+ L
Sbjct  66   PRWYTWIFVTGDVLSLVLQAAGGGLAA-SADSSSEAKTGENIMIAGLAFQVAFLGIFIIL  124

Query  178  AIKFYFNCRRGGVLSNKVKRP-LYVLLCSCTLITVRTIYRTVEYFTAASLNIYNVSDLSP  236
            A  F+   RR  +  ++  +  L  L  +  LI +R+IYR  E                 
Sbjct  125  AADFHRRVRRSTLRLSRRWKLFLLALYAASLLILIRSIYRVAELAQGWD---------GY  175

Query  237  ILKDEWFFWVFETAVMFTNTTLLNVLHPMQWLPRS  271
            ++  E +F+V +  +M     LLNV HP    P  
Sbjct  176  LMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPGR  210



Lambda      K        H        a         alpha
   0.325    0.140    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00022903

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  77.1    1e-18


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 77.1 bits (191),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 10/102 (10%)

Query  1    MAGFVALAIKFYFNCRRGGVLSNKVKRP-LYVLLCSCTLITVRTIYRTVEYFTAASLNIY  59
            +  F+ LA  F+   RR  +  ++  +  L  L  +  LI +R+IYR  E          
Sbjct  118  LGIFIILAADFHRRVRRSTLRLSRRWKLFLLALYAASLLILIRSIYRVAELAQGWD----  173

Query  60   NVSDLSPILKDEWFFWVFETAVMFTNTTLLNVLHPMQWLPRS  101
                   ++  E +F+V +  +M     LLNV HP    P  
Sbjct  174  -----GYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPGR  210



Lambda      K        H        a         alpha
   0.324    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00027386

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  77.1    1e-18


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 77.1 bits (191),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 10/102 (10%)

Query  1    MAGFVALAIKFYFNCRRGGVLSNKVKRP-LYVLLCSCTLITVRTIYRTVEYFTAASLNIY  59
            +  F+ LA  F+   RR  +  ++  +  L  L  +  LI +R+IYR  E          
Sbjct  118  LGIFIILAADFHRRVRRSTLRLSRRWKLFLLALYAASLLILIRSIYRVAELAQGWD----  173

Query  60   NVSDLSPILKDEWFFWVFETAVMFTNTTLLNVLHPMQWLPRS  101
                   ++  E +F+V +  +M     LLNV HP    P  
Sbjct  174  -----GYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPGR  210



Lambda      K        H        a         alpha
   0.324    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00027387

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00022906

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00027388

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00022907

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00022908

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00022904

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00022909

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00022910

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00027389

Length=153
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  170     5e-56


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 170 bits (433),  Expect = 5e-56, Method: Composition-based stats.
 Identities = 62/142 (44%), Positives = 89/142 (63%), Gaps = 3/142 (2%)

Query  6    RIAKELAELTESPPAGITVELVDESNLYEWKVYMEGPEGSPYHKGKFHVKLVLPTEYPFK  65
            R+ KEL EL + PP GI+   VD+ NL+EWKV + GP+G+PY  G F + +  P +YPFK
Sbjct  1    RLQKELKELLKDPPPGISAGPVDD-NLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFK  59

Query  66   PPTVSFATKIYHPNVTNDDKGSMCLGMLRPDEWKPSSRISAVLEFARQLLKEPMPDDAVE  125
            PP V F TKIYHPNV  D  G +CL +L+ + W P+  +  VL   + LL EP P+D + 
Sbjct  60   PPKVKFTTKIYHPNV--DSSGEVCLDILKDERWSPALTLEQVLLSIQSLLSEPNPEDPLN  117

Query  126  GRIAEQYKNDPKRYEEIAREWT  147
               A+ Y+ + + +E+  RE+ 
Sbjct  118  AEAAKLYRKNREEFEKKVREYV  139



Lambda      K        H        a         alpha
   0.313    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00022911

Length=66
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  65.3    4e-16


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 65.3 bits (160),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 18/59 (31%), Positives = 33/59 (56%), Gaps = 0/59 (0%)

Query  2    CLGMLRPDEWKPSSRISAVLEFARQLLKEPMPDDAVEGRIAEQYKNDPKRYEEIAREWT  60
            CL +L+ + W P+  +  VL   + LL EP P+D +    A+ Y+ + + +E+  RE+ 
Sbjct  81   CLDILKDERWSPALTLEQVLLSIQSLLSEPNPEDPLNAEAAKLYRKNREEFEKKVREYV  139



Lambda      K        H        a         alpha
   0.316    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00022912

Length=153
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  170     5e-56


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 170 bits (433),  Expect = 5e-56, Method: Composition-based stats.
 Identities = 62/142 (44%), Positives = 89/142 (63%), Gaps = 3/142 (2%)

Query  6    RIAKELAELTESPPAGITVELVDESNLYEWKVYMEGPEGSPYHKGKFHVKLVLPTEYPFK  65
            R+ KEL EL + PP GI+   VD+ NL+EWKV + GP+G+PY  G F + +  P +YPFK
Sbjct  1    RLQKELKELLKDPPPGISAGPVDD-NLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFK  59

Query  66   PPTVSFATKIYHPNVTNDDKGSMCLGMLRPDEWKPSSRISAVLEFARQLLKEPMPDDAVE  125
            PP V F TKIYHPNV  D  G +CL +L+ + W P+  +  VL   + LL EP P+D + 
Sbjct  60   PPKVKFTTKIYHPNV--DSSGEVCLDILKDERWSPALTLEQVLLSIQSLLSEPNPEDPLN  117

Query  126  GRIAEQYKNDPKRYEEIAREWT  147
               A+ Y+ + + +E+  RE+ 
Sbjct  118  AEAAKLYRKNREEFEKKVREYV  139



Lambda      K        H        a         alpha
   0.313    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00022913

Length=178
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  165     1e-53


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 165 bits (419),  Expect = 1e-53, Method: Composition-based stats.
 Identities = 60/141 (43%), Positives = 88/141 (62%), Gaps = 3/141 (2%)

Query  32   VLQELAELTESPPAGITVELVDESNLYEWKVYMEGPEGSPYHKGKFHVKLVLPTEYPFKP  91
            + +EL EL + PP GI+   VD+ NL+EWKV + GP+G+PY  G F + +  P +YPFKP
Sbjct  2    LQKELKELLKDPPPGISAGPVDD-NLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKP  60

Query  92   PTVSFATKIYHPNVTNDDKGSMCLGMLRPDEWKPSSRISAVLEFARQLLKEPMPDDAVEG  151
            P V F TKIYHPNV  D  G +CL +L+ + W P+  +  VL   + LL EP P+D +  
Sbjct  61   PKVKFTTKIYHPNV--DSSGEVCLDILKDERWSPALTLEQVLLSIQSLLSEPNPEDPLNA  118

Query  152  RIAEQYKNDPKRYEEIAREWT  172
              A+ Y+ + + +E+  RE+ 
Sbjct  119  EAAKLYRKNREEFEKKVREYV  139



Lambda      K        H        a         alpha
   0.315    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00022916

Length=789
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  154     6e-44


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 154 bits (392),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 71/210 (34%), Positives = 97/210 (46%), Gaps = 43/210 (20%)

Query  479  KEHIERDLHRTFPDNVHFKPEFVDEAMTSGTSSGSSNPKYSSVTVETQMIQSLRRVLYAF  538
             E IE+D+ RTFP +  F                                 SLRR+L A+
Sbjct  9    PEQIEKDVPRTFPHSFFFD--------------------------NGPGQNSLRRILKAY  42

Query  539  SLYNPRVGYTQSLNFITGMLLL-FLPEEKAFWML-HIVTSVYLPGTHEISLEGANIDLWI  596
            S+YNP VGY Q +NFI   LLL +L EE AFW    ++ +  L   +     G   DL++
Sbjct  43   SIYNPDVGYCQGMNFIAAPLLLVYLDEEDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYV  102

Query  597  LMVLLKETLPHIYNKIAGNPGRSKTPALTVDSRLPDITLGLTNWLMSLFIGSLPLETTLR  656
               LLK+ LP +Y  +              +  L D  L  + W ++LF    PL T LR
Sbjct  103  FEELLKKKLPKLYKHLK-------------ELGL-DPDLFASQWFLTLFAREFPLSTVLR  148

Query  657  VWDVFFFEGSKTF-FRVSLAIFKACEKDIL  685
            +WD FF EG K   FRV+LAI K   +++L
Sbjct  149  IWDYFFLEGEKFVLFRVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.314    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1011330640


Query= TCONS_00027390

Length=789
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  154     6e-44


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 154 bits (392),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 71/210 (34%), Positives = 97/210 (46%), Gaps = 43/210 (20%)

Query  479  KEHIERDLHRTFPDNVHFKPEFVDEAMTSGTSSGSSNPKYSSVTVETQMIQSLRRVLYAF  538
             E IE+D+ RTFP +  F                                 SLRR+L A+
Sbjct  9    PEQIEKDVPRTFPHSFFFD--------------------------NGPGQNSLRRILKAY  42

Query  539  SLYNPRVGYTQSLNFITGMLLL-FLPEEKAFWML-HIVTSVYLPGTHEISLEGANIDLWI  596
            S+YNP VGY Q +NFI   LLL +L EE AFW    ++ +  L   +     G   DL++
Sbjct  43   SIYNPDVGYCQGMNFIAAPLLLVYLDEEDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYV  102

Query  597  LMVLLKETLPHIYNKIAGNPGRSKTPALTVDSRLPDITLGLTNWLMSLFIGSLPLETTLR  656
               LLK+ LP +Y  +              +  L D  L  + W ++LF    PL T LR
Sbjct  103  FEELLKKKLPKLYKHLK-------------ELGL-DPDLFASQWFLTLFAREFPLSTVLR  148

Query  657  VWDVFFFEGSKTF-FRVSLAIFKACEKDIL  685
            +WD FF EG K   FRV+LAI K   +++L
Sbjct  149  IWDYFFLEGEKFVLFRVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.314    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1011330640


Query= TCONS_00022914

Length=789
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  154     6e-44


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 154 bits (392),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 71/210 (34%), Positives = 97/210 (46%), Gaps = 43/210 (20%)

Query  479  KEHIERDLHRTFPDNVHFKPEFVDEAMTSGTSSGSSNPKYSSVTVETQMIQSLRRVLYAF  538
             E IE+D+ RTFP +  F                                 SLRR+L A+
Sbjct  9    PEQIEKDVPRTFPHSFFFD--------------------------NGPGQNSLRRILKAY  42

Query  539  SLYNPRVGYTQSLNFITGMLLL-FLPEEKAFWML-HIVTSVYLPGTHEISLEGANIDLWI  596
            S+YNP VGY Q +NFI   LLL +L EE AFW    ++ +  L   +     G   DL++
Sbjct  43   SIYNPDVGYCQGMNFIAAPLLLVYLDEEDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYV  102

Query  597  LMVLLKETLPHIYNKIAGNPGRSKTPALTVDSRLPDITLGLTNWLMSLFIGSLPLETTLR  656
               LLK+ LP +Y  +              +  L D  L  + W ++LF    PL T LR
Sbjct  103  FEELLKKKLPKLYKHLK-------------ELGL-DPDLFASQWFLTLFAREFPLSTVLR  148

Query  657  VWDVFFFEGSKTF-FRVSLAIFKACEKDIL  685
            +WD FF EG K   FRV+LAI K   +++L
Sbjct  149  IWDYFFLEGEKFVLFRVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.314    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1011330640


Query= TCONS_00027391

Length=789
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  154     6e-44


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 154 bits (392),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 71/210 (34%), Positives = 97/210 (46%), Gaps = 43/210 (20%)

Query  479  KEHIERDLHRTFPDNVHFKPEFVDEAMTSGTSSGSSNPKYSSVTVETQMIQSLRRVLYAF  538
             E IE+D+ RTFP +  F                                 SLRR+L A+
Sbjct  9    PEQIEKDVPRTFPHSFFFD--------------------------NGPGQNSLRRILKAY  42

Query  539  SLYNPRVGYTQSLNFITGMLLL-FLPEEKAFWML-HIVTSVYLPGTHEISLEGANIDLWI  596
            S+YNP VGY Q +NFI   LLL +L EE AFW    ++ +  L   +     G   DL++
Sbjct  43   SIYNPDVGYCQGMNFIAAPLLLVYLDEEDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYV  102

Query  597  LMVLLKETLPHIYNKIAGNPGRSKTPALTVDSRLPDITLGLTNWLMSLFIGSLPLETTLR  656
               LLK+ LP +Y  +              +  L D  L  + W ++LF    PL T LR
Sbjct  103  FEELLKKKLPKLYKHLK-------------ELGL-DPDLFASQWFLTLFAREFPLSTVLR  148

Query  657  VWDVFFFEGSKTF-FRVSLAIFKACEKDIL  685
            +WD FF EG K   FRV+LAI K   +++L
Sbjct  149  IWDYFFLEGEKFVLFRVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.314    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1011330640


Query= TCONS_00022915

Length=789
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  154     6e-44


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 154 bits (392),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 71/210 (34%), Positives = 97/210 (46%), Gaps = 43/210 (20%)

Query  479  KEHIERDLHRTFPDNVHFKPEFVDEAMTSGTSSGSSNPKYSSVTVETQMIQSLRRVLYAF  538
             E IE+D+ RTFP +  F                                 SLRR+L A+
Sbjct  9    PEQIEKDVPRTFPHSFFFD--------------------------NGPGQNSLRRILKAY  42

Query  539  SLYNPRVGYTQSLNFITGMLLL-FLPEEKAFWML-HIVTSVYLPGTHEISLEGANIDLWI  596
            S+YNP VGY Q +NFI   LLL +L EE AFW    ++ +  L   +     G   DL++
Sbjct  43   SIYNPDVGYCQGMNFIAAPLLLVYLDEEDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYV  102

Query  597  LMVLLKETLPHIYNKIAGNPGRSKTPALTVDSRLPDITLGLTNWLMSLFIGSLPLETTLR  656
               LLK+ LP +Y  +              +  L D  L  + W ++LF    PL T LR
Sbjct  103  FEELLKKKLPKLYKHLK-------------ELGL-DPDLFASQWFLTLFAREFPLSTVLR  148

Query  657  VWDVFFFEGSKTF-FRVSLAIFKACEKDIL  685
            +WD FF EG K   FRV+LAI K   +++L
Sbjct  149  IWDYFFLEGEKFVLFRVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.314    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1011330640


Query= TCONS_00027392

Length=789
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  154     6e-44


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 154 bits (392),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 71/210 (34%), Positives = 97/210 (46%), Gaps = 43/210 (20%)

Query  479  KEHIERDLHRTFPDNVHFKPEFVDEAMTSGTSSGSSNPKYSSVTVETQMIQSLRRVLYAF  538
             E IE+D+ RTFP +  F                                 SLRR+L A+
Sbjct  9    PEQIEKDVPRTFPHSFFFD--------------------------NGPGQNSLRRILKAY  42

Query  539  SLYNPRVGYTQSLNFITGMLLL-FLPEEKAFWML-HIVTSVYLPGTHEISLEGANIDLWI  596
            S+YNP VGY Q +NFI   LLL +L EE AFW    ++ +  L   +     G   DL++
Sbjct  43   SIYNPDVGYCQGMNFIAAPLLLVYLDEEDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYV  102

Query  597  LMVLLKETLPHIYNKIAGNPGRSKTPALTVDSRLPDITLGLTNWLMSLFIGSLPLETTLR  656
               LLK+ LP +Y  +              +  L D  L  + W ++LF    PL T LR
Sbjct  103  FEELLKKKLPKLYKHLK-------------ELGL-DPDLFASQWFLTLFAREFPLSTVLR  148

Query  657  VWDVFFFEGSKTF-FRVSLAIFKACEKDIL  685
            +WD FF EG K   FRV+LAI K   +++L
Sbjct  149  IWDYFFLEGEKFVLFRVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.314    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0718    0.140     1.90     42.6     43.6 

Effective search space used: 1011330640


Query= TCONS_00027393

Length=789
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  154     6e-44


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 154 bits (392),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 71/210 (34%), Positives = 97/210 (46%), Gaps = 43/210 (20%)

Query  479  KEHIERDLHRTFPDNVHFKPEFVDEAMTSGTSSGSSNPKYSSVTVETQMIQSLRRVLYAF  538
             E IE+D+ RTFP +  F                                 SLRR+L A+
Sbjct  9    PEQIEKDVPRTFPHSFFFD--------------------------NGPGQNSLRRILKAY  42

Query  539  SLYNPRVGYTQSLNFITGMLLL-FLPEEKAFWML-HIVTSVYLPGTHEISLEGANIDLWI  596
            S+YNP VGY Q +NFI   LLL +L EE AFW    ++ +  L   +     G   DL++
Sbjct  43   SIYNPDVGYCQGMNFIAAPLLLVYLDEEDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYV  102

Query  597  LMVLLKETLPHIYNKIAGNPGRSKTPALTVDSRLPDITLGLTNWLMSLFIGSLPLETTLR  656
               LLK+ LP +Y  +              +  L D  L  + W ++LF    PL T LR
Sbjct  103  FEELLKKKLPKLYKHLK-------------ELGL-DPDLFASQWFLTLFAREFPLSTVLR  148

Query  657  VWDVFFFEGSKTF-FRVSLAIFKACEKDIL  685
            +WD FF EG K   FRV+LAI K   +++L
Sbjct  149  IWDYFFLEGEKFVLFRVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.314    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1011330640


Query= TCONS_00022917

Length=789
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  154     6e-44


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 154 bits (392),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 71/210 (34%), Positives = 97/210 (46%), Gaps = 43/210 (20%)

Query  479  KEHIERDLHRTFPDNVHFKPEFVDEAMTSGTSSGSSNPKYSSVTVETQMIQSLRRVLYAF  538
             E IE+D+ RTFP +  F                                 SLRR+L A+
Sbjct  9    PEQIEKDVPRTFPHSFFFD--------------------------NGPGQNSLRRILKAY  42

Query  539  SLYNPRVGYTQSLNFITGMLLL-FLPEEKAFWML-HIVTSVYLPGTHEISLEGANIDLWI  596
            S+YNP VGY Q +NFI   LLL +L EE AFW    ++ +  L   +     G   DL++
Sbjct  43   SIYNPDVGYCQGMNFIAAPLLLVYLDEEDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYV  102

Query  597  LMVLLKETLPHIYNKIAGNPGRSKTPALTVDSRLPDITLGLTNWLMSLFIGSLPLETTLR  656
               LLK+ LP +Y  +              +  L D  L  + W ++LF    PL T LR
Sbjct  103  FEELLKKKLPKLYKHLK-------------ELGL-DPDLFASQWFLTLFAREFPLSTVLR  148

Query  657  VWDVFFFEGSKTF-FRVSLAIFKACEKDIL  685
            +WD FF EG K   FRV+LAI K   +++L
Sbjct  149  IWDYFFLEGEKFVLFRVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.314    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1011330640


Query= TCONS_00022918

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00022920

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00022919

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            87.9    1e-19


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 87.9 bits (218),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 125/328 (38%), Gaps = 14/328 (4%)

Query  52   FCSFGYVNACGIFQLYYQETMLKD--QTSSALAWITTLQIFLLFMFGPAVGKMIDVYGCR  109
              +F       +        + +D   + + +  + TL      +  P  G++ D +G R
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRR  62

Query  110  RTLPPFSIGAVFSVCMLSLCTKYWQVMLAQGVAFGLAAAGLSLPAMATATQWFSTKK-GL  168
            R L    +     + +L   +  W +++   V  GL A  L   A+A    WF  ++ G 
Sbjct  63   RVLLIGLLLFALGLLLLLFASSLWLLLVL-RVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  169  AVGIVSAGSSLGGVIYPCMLPRLIEQVGFASAVRWTALMQGILLFIANLLCSSPYPPLGR  228
            A+G+VSAG  LG  + P +   L    G+    R   L+  IL  +A +L   P PP   
Sbjct  122  ALGLVSAGFGLGAALGPLLGGLLASLFGW----RAAFLILAILSLLAAVLLLLPRPPPES  177

Query  229  ASKEASAEKDATEPTPRRSGLRGFKSLPWGFFVLGCFFTMWGLFAPLNYLPEMAALHGYQ  288
               + + E             +     P  + +L      +  F  L YLP    + G  
Sbjct  178  KRPKPAEEA----RLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLS  233

Query  289  SF-ARYTLAIANAGSLVGRIVPGWVSDIIGQFNTMCIVTSLSGVLVLAFWLPLEFHTSLA  347
            +  A   L +      +GR++ G +SD +G+   + ++  L  +L     L L    S  
Sbjct  234  ALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRL-LLALLLLILAALGLLLLSLTLSSL  292

Query  348  GIIVFALLFGFVSGGFVSLGPPCVVSLA  375
             +++  LL GF  G         V  LA
Sbjct  293  WLLLALLLLGFGFGLVFPALNALVSDLA  320



Lambda      K        H        a         alpha
   0.325    0.141    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 550599736


Query= TCONS_00022921

Length=2202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 265     1e-78
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  169     4e-45


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 265 bits (680),  Expect = 1e-78, Method: Composition-based stats.
 Identities = 112/424 (26%), Positives = 184/424 (43%), Gaps = 49/424 (12%)

Query  1084  IENSIQAHPDIYAVE-GLTGRLTYREFGRMTEHISQRLLQH-IQPGSVACMISDGSLLWL  1141
             +E      PD  A+E G   RLTYRE       ++  L    +  G    ++   S  W+
Sbjct  1     LERQAARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWV  60

Query  1142  LAMVAIIRAGAIYCPVDEKLPRDRKDYMVRNSRAALILYANSSQ-EPLCNGVPSLNMESI  1200
             +A +A ++AGA+Y P++ +LP +   Y++ +S A +++  ++ + E L   +  L +  +
Sbjct  61    VAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKL  120

Query  1201  M-------------QEISSSSGSPIATSRNRPSGDTVACLVYTSGSTGLPKAVQLQHKGI  1247
             +                 +            P  D +A ++YTSG+TG PK V L H+ +
Sbjct  121   VLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNL  180

Query  1248  LNVISQ----PEGRLYSRPGQRNAQMLSLGFDC-CIKEVFSTICFGATLVLKDPENP---  1299
             +  +              P  R    L L  D      +   +  GAT+VL         
Sbjct  181   VANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDP  240

Query  1300  ------ISHLARVDATMATPSLLATL------EPTDYPNLKVITVAGEAVSQVLNDKWAA  1347
                   I    +V      P+LL  L      +     +L+++   G  +   L  ++  
Sbjct  241   AALLELIERY-KVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFRE  299

Query  1348  --GRTLINGYGPAECTLISTTAILHPGNRV---SIGKPLPGLSCYLLD-SNKRPVPMGVS  1401
               G  L+NGYG  E T + TT +    +     S+G+PLPG    ++D     PVP G  
Sbjct  300   LFGGALVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPGEP  359

Query  1402  GEIYISGVQVTPGYLHNEQETSKRFLSDSFNPGQVMYRTGDIGRMLEDGNIEYIGREDNQ  1461
             GE+ + G  V  GYL++ + T++ F  D        YRTGD+GR  EDG +E +GR+ +Q
Sbjct  360   GELCVRGPGVMKGYLNDPELTAEAFDEDG------WYRTGDLGRRDEDGYLEIVGRKKDQ  413

Query  1462  IKLR  1465
             IKL 
Sbjct  414   IKLG  417


 Score = 242 bits (620),  Expect = 1e-70, Method: Composition-based stats.
 Identities = 113/428 (26%), Positives = 172/428 (40%), Gaps = 47/428 (11%)

Query  29   FHDQLQKHSSSVAIEDGTQSADQGAWERVTYAQLDALSDSWSKRLRQAGVGAGCIVPLLS  88
               Q  +     A+E G          R+TY +LD  ++  +  LR  GVG G  V +L 
Sbjct  1    LERQAARTPDKTALEVGE-------GRRLTYRELDERANRLAAGLRALGVGKGDRVAILL  53

Query  89   KRSVAMVAATLAILKLRAAYVSIDIDSWGKDRIDTVLKTVNPQIIVSTSPC---------  139
              S   V A LA LK  A YV ++      + +  +L+    +++++             
Sbjct  54   PNSPEWVVAFLACLKAGAVYVPLN-PRLPAEELAYILEDSGAKVLITDDALKLEELLEAL  112

Query  140  PKDHYPYPVVALERNDFDETVTSNGTQWTRND---EDSIDRGNDLAYIIFTSGTTGIPKG  196
             K      V+ L+R+   +           +           +DLAYII+TSGTTG PKG
Sbjct  113  GKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKG  172

Query  197  VKIGQRSISRYVKEGGDLPF-NFNTTHGTRVLLICSIAFDV-CAGVMFNTLCNGGTLVLA  254
            V +  R++   V     +    F      RVL    +  D   +  +   L  G T+VL 
Sbjct  173  VMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLP  232

Query  255  DPSTFETAAKT--------CHVLPLTPSILVTL-----DPKAGFDTVEKIFLGGESPSPS  301
                    A            VL   P++L  L       +A   ++  +  GG    P 
Sbjct  233  PGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPE  292

Query  302  LIEAWSS-PRRRLYNAYGPTETT---CTAFMGELLPGSPITIGYPISYSTVTLLDEDGME  357
            L   +       L N YG TETT    T    +    S  ++G P+  + V ++D++  E
Sbjct  293  LARRFRELFGGALVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGE  352

Query  358  SV----EGEICIAGLGLALGYFHDPERTNSAFVEWNGVRIYKTGDYGRRTKHG-LQFCGR  412
             V     GE+C+ G G+  GY +DPE T  AF E      Y+TGD GRR + G L+  GR
Sbjct  353  PVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDE---DGWYRTGDLGRRDEDGYLEIVGR  409

Query  413  RDSVVKNR  420
            +   +K  
Sbjct  410  KKDQIKLG  417


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 169 bits (429),  Expect = 4e-45, Method: Composition-based stats.
 Identities = 117/457 (26%), Positives = 180/457 (39%), Gaps = 45/457 (10%)

Query  624   TIAPMTDMQTRLLGASVATPGLSFIKTSFTLDHPEKEDLTSTLRAAWVRLHQTHEILRTA  683
                P++  Q R+       P  S       L     E     L  A   L   H+ LRT 
Sbjct  3     DEYPLSPAQKRMWFLEKLEPHSSAYNMPAVL-KLTGELDPERLEKALQELINRHDALRTV  61

Query  684   FVLTASNGT--QIISQEPDFSWKE---KFVTESEWESVCRREEHLDVADFPDFDAENRAS  738
             F+    NG   Q+I +E  F  +      ++ESE E         D+     FD E    
Sbjct  62    FIR-QENGEPVQVILEERPFELEIIDISDLSESEEEEAIEAFIQRDLQS--PFDLEK-GP  117

Query  739   LSRVVLIIAPRRRTRFVWTVHHSLIDGWSMATLMRDFA----SCLDGKPIPAPP--QFAQ  792
             L R  L      R   + ++HH ++DG S+  L+RD A      L G+P+P PP   +  
Sbjct  118   LFRAGLFRIAENRHHLLLSMHHIIVDGVSLGILLRDLADLYQQLLKGEPLPLPPKTPYKD  177

Query  793   VAQAIGQLKAESSD--RAVSFWKEYLDGYTPAQRLRVSPPSDVSDYTQAALSR----KLT  846
              A+ + Q   +S D  +  ++W E L+G  P  +L   P     DY + A       +L+
Sbjct  178   YAEWL-QQYLQSEDYQKDAAYWLEQLEGELPVLQL---PK----DYARPADRSFKGDRLS  229

Query  847   VSVSALEDAARDRFA----VTPATLLYAAWGLLLSRYSGTDRAALGAVLSGRSLPIPGVE  902
              ++    +    + A     T   +L AA+GLLLSRY+G D   +G   SGR  P P +E
Sbjct  230   FTLDEDTEELLRKLAKAHGTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGSGR--PSPDIE  287

Query  903   NIIGPLINTLPLAINTQEAQSTYSFVQSVFRRLCDILEFQWSPVALIQEGCGCNPSELFE  962
              ++G  +NTLPL I+ +  ++    ++ V   L      Q  P   +             
Sbjct  288   RMVGMFVNTLPLRIDPKGGKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRH  347

Query  963   TLFALQYDFPQTPWKSSEVPEP--------RDIRYEEATQVPLTVLLDNANGQFEVRFIY  1014
              LF   + F     + S+  E              EE  +  L++      G   ++  Y
Sbjct  348   PLFDPMFSFQNYLGQDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDY  407

Query  1015  RRSHFGDATVQRMIGQFGNLLENLIAAQPDTDLSNVT  1051
               S F + T++R    F  LLE    A P   LS + 
Sbjct  408   NTSLFDEETIERFAEHFKELLEQ-AIAHPSQPLSELD  443


 Score = 139 bits (353),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 90/413 (22%), Positives = 148/413 (36%), Gaps = 29/413 (7%)

Query  1664  GQLPLSYLEKEMLLNHLISGGSPAGNMNFVCKIRGDINAETLADAFQRVTADVEVFRTRY  1723
              + PLS  +K M     +   S A NM  V K+ G+++ E L  A Q +    +  RT +
Sbjct  3     DEYPLSPAQKRMWFLEKLEPHSSAYNMPAVLKLTGELDPERLEKALQELINRHDALRTVF  62

Query  1724  SVIEGTLFRQQAPGSVKVP----------RVVQTGNLSSFVHGRITKSFDLSTEPPVDVS  1773
                E     Q                      +   + +F+   +   FDL   P     
Sbjct  63    IRQENGEPVQVILEERPFELEIIDISDLSESEEEEAIEAFIQRDLQSPFDLEKGPLFRAG  122

Query  1774  IIIGTPMQAMLVVVMSHVVGDAATMATYLNRVSRTYDLLRSNSQTTNTSTVPDNLTYIDW  1833
             +      +  L++ M H++ D  ++   L  ++  Y  L            P    Y D+
Sbjct  123   LFRIAENRHHLLLSMHHIIVDGVSLGILLRDLADLYQQLLKGEPLPLPPKTP----YKDY  178

Query  1834  AHWASTLQPNPR---ALTFWSSYLSNPPSPLTFGNPSPAPA--TYIGLTRSWTLPPSMYR  1888
             A W      +        +W   L      L        PA  ++ G   S+TL      
Sbjct  179   AEWLQQYLQSEDYQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSFTLDEDTEE  238

Query  1889  KLSDLAAKASVTMHQLILAAVFFSLQCVDRRDDILVAAPFTHRTEPGTESLPGLFLDRLL  1948
              L  LA     T++ ++LAA    L     +DDI+V  P + R  P  E + G+F++ L 
Sbjct  239   LLRKLAKAHGTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGSGRPSPDIERMVGMFVNTLP  298

Query  1949  LRIQRSPHQSSIF-DFLSSVRETSQQALAHV-IPFHTLRHSLAHKPSLID-PLFKVMVTY  2005
             LRI     ++  F + +  V+E    A  H   PF  L + L     L   PLF  M ++
Sbjct  299   LRIDPKGGKT--FSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSF  356

Query  2006  HTAADQRP---LLDLSGAEVQPIPWRHTGGSKFPLKFEFTEMATQDLEVDMEY  2055
                  Q        LS  ++          +K+ L    +E     L + ++Y
Sbjct  357   QNYLGQDSQEEEFQLSELDLSVSSVIEE-EAKYDLSLTASE-RGGGLTIKIDY  407



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2768458286


Query= TCONS_00022922

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463422 pfam11991, Trp_DMAT, Tryptophan dimethylallyltransfera...  404     5e-140


>CDD:463422 pfam11991, Trp_DMAT, Tryptophan dimethylallyltransferase.  This 
family of proteins represents tryptophan dimethylallyltransferase 
(EC:2.5.1.34), which catalyzes the first step of ergot 
alkaloid biosynthesis. Ergot alkaloids, which are produced 
by endophyte fungi, can enhance plant host fitness, but also 
cause livestock toxicosis to host plants. This protein is 
found in bacteria and eukaryotes. Proteins in this family 
are typically between 390 to 465 amino acids in length.
Length=356

 Score = 404 bits (1040),  Expect = 5e-140, Method: Composition-based stats.
 Identities = 144/367 (39%), Positives = 206/367 (56%), Gaps = 22/367 (6%)

Query  69   FWWRETGPVMSKLLAKANYPLYTHYKYLMLYHTHILPLLGPRPPLENSTHPSPSNAPWRS  128
            FWW  TGP++++LL +A Y +   Y++L+ +   ++P LG         +P+     W+S
Sbjct  4    FWWHATGPMLARLLEEAGYSVEQQYEHLLFFRHVVVPALG--------PYPASPRPRWKS  55

Query  129  FLTDDFTPLEPSWNVNGNSEAQSTIRLGIEPIGFEAGAAADPFNQAAVTQFMHSYEATEV  188
             LTDD +P E SWN  G+ +   T+R   EPIG  AG  ADPFNQ A  + +        
Sbjct  56   LLTDDGSPFELSWNFQGSGK--PTVRFAFEPIGPLAGTPADPFNQQATRELLDRLARLGP  113

Query  189  GATLTLFEHFRNDMFV-GPETYAALRAKIPEGEHTTQSFLAFDLDAGRVTTKAYFFPILM  247
            G  LT F+HF + + +   E  A      P G   +Q+FLAFDL  G++  KAYF+P L 
Sbjct  114  GVDLTWFDHFADALLLSDEEAAALAEKSPPGGARRSQAFLAFDLKGGKIVLKAYFYPRLK  173

Query  248  SLKTGQSTTKVVSDSILHLALKSEVWGVQTIAAMSVMEAWIGSYGGAAKTEMISVDCVNE  307
            +L TG S  ++V D+I  L             A+ ++E ++ S       EM+S+DCV+ 
Sbjct  174  ALATGVSPLELVFDAIRRLD-----KPANLEPALDLLEEYLASLNPDLPPEMLSIDCVDP  228

Query  308  ADSRIKIYVRMPHTSLRKVKEAYCLGGRLTDENTKEGLKLLDELWRTVFGIDDEDAELPQ  367
            + SR+KIYVR P TS   V++ + LGGRL D+ T +GL+LL ELW  + G+ +   + P+
Sbjct  229  SKSRLKIYVRTPSTSFASVRDVWTLGGRLNDDETLKGLELLRELWHLLLGLPEGFRDDPE  288

Query  368  ------NSHRTAGTIFNFELRPGKWFPEPKVYLPVRHYCESDMQIASRLQTFFGRLGWHN  421
                    H T+G ++NFELRPG+  PEPKVY+PVRHY  +D+ IA  L  FF RLGW  
Sbjct  289  LPLLRDPPHETSGLLYNFELRPGRPLPEPKVYIPVRHYGRNDLAIAEALTEFFERLGWGE  348

Query  422  MEKDYCK  428
            M   Y  
Sbjct  349  MADSYLD  355



Lambda      K        H        a         alpha
   0.318    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00027395

Length=434
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463422 pfam11991, Trp_DMAT, Tryptophan dimethylallyltransfera...  405     8e-141


>CDD:463422 pfam11991, Trp_DMAT, Tryptophan dimethylallyltransferase.  This 
family of proteins represents tryptophan dimethylallyltransferase 
(EC:2.5.1.34), which catalyzes the first step of ergot 
alkaloid biosynthesis. Ergot alkaloids, which are produced 
by endophyte fungi, can enhance plant host fitness, but also 
cause livestock toxicosis to host plants. This protein is 
found in bacteria and eukaryotes. Proteins in this family 
are typically between 390 to 465 amino acids in length.
Length=356

 Score = 405 bits (1042),  Expect = 8e-141, Method: Composition-based stats.
 Identities = 144/367 (39%), Positives = 206/367 (56%), Gaps = 22/367 (6%)

Query  69   FWWRETGPVMSKLLAKANYPLYTHYKYLMLYHTHILPLLGPRPPLENSTHPSPSNAPWRS  128
            FWW  TGP++++LL +A Y +   Y++L+ +   ++P LG         +P+     W+S
Sbjct  4    FWWHATGPMLARLLEEAGYSVEQQYEHLLFFRHVVVPALG--------PYPASPRPRWKS  55

Query  129  FLTDDFTPLEPSWNVNGNSEAQSTIRLGIEPIGFEAGAAADPFNQAAVTQFMHSYEATEV  188
             LTDD +P E SWN  G+ +   T+R   EPIG  AG  ADPFNQ A  + +        
Sbjct  56   LLTDDGSPFELSWNFQGSGK--PTVRFAFEPIGPLAGTPADPFNQQATRELLDRLARLGP  113

Query  189  GATLTLFEHFRNDMFV-GPETYAALRAKIPEGEHTTQSFLAFDLDAGRVTTKAYFFPILM  247
            G  LT F+HF + + +   E  A      P G   +Q+FLAFDL  G++  KAYF+P L 
Sbjct  114  GVDLTWFDHFADALLLSDEEAAALAEKSPPGGARRSQAFLAFDLKGGKIVLKAYFYPRLK  173

Query  248  SLKTGQSTTKVVSDSILHLALKSEVWGVQTIAAMSVMEAWIGSYGGAAKTEMISVDCVNE  307
            +L TG S  ++V D+I  L             A+ ++E ++ S       EM+S+DCV+ 
Sbjct  174  ALATGVSPLELVFDAIRRLD-----KPANLEPALDLLEEYLASLNPDLPPEMLSIDCVDP  228

Query  308  ADSRIKIYVRMPHTSLRKVKEAYCLGGRLTDENTKEGLKLLDELWRTVFGIDDEDAELPQ  367
            + SR+KIYVR P TS   V++ + LGGRL D+ T +GL+LL ELW  + G+ +   + P+
Sbjct  229  SKSRLKIYVRTPSTSFASVRDVWTLGGRLNDDETLKGLELLRELWHLLLGLPEGFRDDPE  288

Query  368  ------NSHRTAGTIFNFELRPGKWFPEPKVYLPVRHYCESDMQIASRLQTFFGRLGWHN  421
                    H T+G ++NFELRPG+  PEPKVY+PVRHY  +D+ IA  L  FF RLGW  
Sbjct  289  LPLLRDPPHETSGLLYNFELRPGRPLPEPKVYIPVRHYGRNDLAIAEALTEFFERLGWGE  348

Query  422  MEKDYCK  428
            M   Y  
Sbjct  349  MADSYLD  355



Lambda      K        H        a         alpha
   0.318    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 527594176


Query= TCONS_00022924

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00022927

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00027396

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00022925

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461337 pfam04515, Choline_transpo, Plasma-membrane choline tr...  301     2e-99


>CDD:461337 pfam04515, Choline_transpo, Plasma-membrane choline transporter. 
 This family represents a high-affinity plasma-membrane 
choline transporter in C.elegans which is thought to be rate-limiting 
for ACh synthesis in cholinergic nerve terminals.
Length=325

 Score = 301 bits (774),  Expect = 2e-99, Method: Composition-based stats.
 Identities = 111/328 (34%), Positives = 177/328 (54%), Gaps = 9/328 (3%)

Query  188  IVFLLFGVFAIICFISWIPRIPFSAFMLQTSIDVSRKYGHMFIVSTIGGLVAVAFAAWFS  247
            IVFL+  V  ++  I    RIP +  +L+ +    +    + +V  +  L+ +AF+A++ 
Sbjct  1    IVFLIIAVILLLLLIFLRKRIPLAIALLKEASKAIKSNPSLLLVPLLTFLILLAFSAYWI  60

Query  248  VTLVSIYVA---YEPSSSGSNPSCSDGGC---SRARVIGLVVYVTFAMYWFSEWLKNTIH  301
            V  V++Y+A     P       S   GG    S ++VI L++Y  F + W SE++     
Sbjct  61   VVAVALYLASSGGPPYKVNDGNSSGGGGVEFESDSKVIYLLLYHLFGLLWTSEFILAVQQ  120

Query  302  TTIAGVYGSWYFWSQSPNGMPRGSTRGAFRRATTYSFGSVSFGSLIIAIINMLRQACSVA  361
             TIAG   SWYF  + P G P+    G+F+RA TY  GS++FGSLI+AI+ +LR      
Sbjct  121  MTIAGAVASWYFAKKDP-GTPKFPVLGSFKRALTYHLGSIAFGSLILAIVQILRLILEYL  179

Query  362  QRNEAAEGSIVGSIMFWILGCFIAILDWLVTLFNRYAFCHIALYGKAYIPAAKDTWTMMR  421
             R      + +   +   L C +  L+  +   N+ A+  IA+YGK++  +AKD + +++
Sbjct  180  DRKLKKAENKIARCLLCCLQCCLWCLEKFLKYLNKNAYIMIAIYGKSFCTSAKDAFELLK  239

Query  422  DRGIDALVNDCLIGPVLTMGSVFVSYVCALLAYLYLQFTKPSYNADGNFTAVIMAFAFVI  481
              G+   VNDCL   VL +G +FV+ +  L+AYLYL+FT  +  A  N   V +  AF+I
Sbjct  240  RNGLRVAVNDCLGDFVLFLGKLFVALLTGLIAYLYLRFT--TNPASLNSPVVPLLVAFLI  297

Query  482  GLQICQIFMTPVSSGIETIFVAMGWDPQ  509
            G  I  IFM+   SG++TIF+    DP+
Sbjct  298  GYLIASIFMSVYESGVDTIFLCFAEDPE  325



Lambda      K        H        a         alpha
   0.327    0.141    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00022926

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00027397

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00027398

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461337 pfam04515, Choline_transpo, Plasma-membrane choline tr...  302     1e-99


>CDD:461337 pfam04515, Choline_transpo, Plasma-membrane choline transporter. 
 This family represents a high-affinity plasma-membrane 
choline transporter in C.elegans which is thought to be rate-limiting 
for ACh synthesis in cholinergic nerve terminals.
Length=325

 Score = 302 bits (775),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 111/328 (34%), Positives = 177/328 (54%), Gaps = 9/328 (3%)

Query  188  IVFLLFGVFAIICFISWIPRIPFSAFMLQTSIDVSRKYGHMFIVSTIGGLVAVAFAAWFS  247
            IVFL+  V  ++  I    RIP +  +L+ +    +    + +V  +  L+ +AF+A++ 
Sbjct  1    IVFLIIAVILLLLLIFLRKRIPLAIALLKEASKAIKSNPSLLLVPLLTFLILLAFSAYWI  60

Query  248  VTLVSIYVA---YEPSSSGSNPSCSDGGC---SRARVIGLVVYVTFAMYWFSEWLKNTIH  301
            V  V++Y+A     P       S   GG    S ++VI L++Y  F + W SE++     
Sbjct  61   VVAVALYLASSGGPPYKVNDGNSSGGGGVEFESDSKVIYLLLYHLFGLLWTSEFILAVQQ  120

Query  302  TTIAGVYGSWYFWSQSPNGMPRGSTRGAFRRATTYSFGSVSFGSLIIAIINMLRQACSVA  361
             TIAG   SWYF  + P G P+    G+F+RA TY  GS++FGSLI+AI+ +LR      
Sbjct  121  MTIAGAVASWYFAKKDP-GTPKFPVLGSFKRALTYHLGSIAFGSLILAIVQILRLILEYL  179

Query  362  QRNEAAEGSIVGSIMFWILGCFIAILDWLVTLFNRYAFCHIALYGKAYIPAAKDTWTMMR  421
             R      + +   +   L C +  L+  +   N+ A+  IA+YGK++  +AKD + +++
Sbjct  180  DRKLKKAENKIARCLLCCLQCCLWCLEKFLKYLNKNAYIMIAIYGKSFCTSAKDAFELLK  239

Query  422  DRGIDALVNDCLIGPVLTMGSVFVSYVCALLAYLYLQFTKPSYNADGNFTAVIMAFAFVI  481
              G+   VNDCL   VL +G +FV+ +  L+AYLYL+FT  +  A  N   V +  AF+I
Sbjct  240  RNGLRVAVNDCLGDFVLFLGKLFVALLTGLIAYLYLRFT--TNPASLNSPVVPLLVAFLI  297

Query  482  GLQICQIFMTPVSSGIETIFVAMGWDPQ  509
            G  I  IFM+   SG++TIF+    DP+
Sbjct  298  GYLIASIFMSVYESGVDTIFLCFAEDPE  325



Lambda      K        H        a         alpha
   0.327    0.141    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00027399

Length=474


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00022928

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432732 pfam12706, Lactamase_B_2, Beta-lactamase superfamily d...  115     5e-31


>CDD:432732 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain. 
 This family is part of the beta-lactamase superfamily and is 
related to pfam00753.
Length=196

 Score = 115 bits (291),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 63/253 (25%), Positives = 96/253 (38%), Gaps = 67/253 (26%)

Query  136  RVLFDPVFEDRCSPFSWLGPKRYTEVPCQIKDIPFIDAVVISHNHYDHLSHPTVKEIAKL  195
            R+L DP                    P +++D P IDAV+++H+HYDHL+   + ++ + 
Sbjct  2    RILIDPGP-------DLRQQALPALQPGRLRDDP-IDAVLLTHDHYDHLA--GLLDLREG  51

Query  196  HPNCHFFAPLGN----KEWFSSSGIK-----NMTEMDWWEERDVVLSPSKKPDTTVEEAT  246
             P    +APLG     +  F    +       + E+DW E   V                
Sbjct  52   RPR-PLYAPLGVLAHLRRNFPYLFLLEHYGVRVHEIDWGESFTV----------------  94

Query  247  GDLKSKPADIKARIGCLPCQHTSARGLLDREKTLWSSWYVESGGRKVYFAGDTGYRAVPE  306
                    D    +   P +H S RGL D        + +E  G++VY+AGDTGY     
Sbjct  95   -------GDGGLTVTATPARHGSPRGL-DPNPGDTLGFRIEGPGKRVYYAGDTGY-----  141

Query  307  LPDGVDDHAPEYDYPSCPAFKQVGEFRGPFDLGLIPIGAYAPRFIMSPMHADPHDAVEIF  366
                  D               +GE  G  DL L+  GA+    ++   H  P +AVE  
Sbjct  142  ----FPDE--------------IGERLGGADLLLLDGGAWRDDEMIHMGHMTPEEAVEAA  183

Query  367  RDTKCKRATAMHW  379
             D   +R   +H 
Sbjct  184  ADLGARRKVLIHI  196



Lambda      K        H        a         alpha
   0.319    0.136    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00022929

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432732 pfam12706, Lactamase_B_2, Beta-lactamase superfamily d...  79.7    4e-19


>CDD:432732 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain. 
 This family is part of the beta-lactamase superfamily and is 
related to pfam00753.
Length=196

 Score = 79.7 bits (197),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 50/128 (39%), Gaps = 24/128 (19%)

Query  34   KPADIKARIGCLPCQHTSARGLLDREKTLWSSWYVESGGRKVYFAGDTGYRAVPELPDGV  93
               D    +   P +H S RGL D        + +E  G++VY+AGDTGY          
Sbjct  93   TVGDGGLTVTATPARHGSPRGL-DPNPGDTLGFRIEGPGKRVYYAGDTGY---------F  142

Query  94   DDHAPEYDYPSCPAFKQVGEFRGPFDLGLIPIGAYAPRFIMSPMHADPHDAVEIFRDTKC  153
             D               +GE  G  DL L+  GA+    ++   H  P +AVE   D   
Sbjct  143  PDE--------------IGERLGGADLLLLDGGAWRDDEMIHMGHMTPEEAVEAAADLGA  188

Query  154  KRATAMHW  161
            +R   +H 
Sbjct  189  RRKVLIHI  196



Lambda      K        H        a         alpha
   0.317    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00022930

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432732 pfam12706, Lactamase_B_2, Beta-lactamase superfamily d...  76.6    3e-17


>CDD:432732 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain. 
 This family is part of the beta-lactamase superfamily and is 
related to pfam00753.
Length=196

 Score = 76.6 bits (189),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 42/171 (25%), Positives = 67/171 (39%), Gaps = 44/171 (26%)

Query  136  RVLFDPVFEDRCSPFSWLGPKRYTEVPCQIKDIPFIDAVVISHNHYDHLSHPTVKEIAKL  195
            R+L DP                    P +++D P IDAV+++H+HYDHL+   + ++ + 
Sbjct  2    RILIDPGP-------DLRQQALPALQPGRLRDDP-IDAVLLTHDHYDHLA--GLLDLREG  51

Query  196  HPNCHFFAPLGN----KEWFSSSGIK-----NMTEMDWWEERDVVLSPSKKPDTTVEEAT  246
             P    +APLG     +  F    +       + E+DW E   V                
Sbjct  52   RPR-PLYAPLGVLAHLRRNFPYLFLLEHYGVRVHEIDWGESFTV----------------  94

Query  247  GDLKSKPADIKARIGCLPCQHTSARGLLDREKTLWSSWYVESGGRKVYFAG  297
                    D    +   P +H S RG LD        + +E  G++VY+AG
Sbjct  95   -------GDGGLTVTATPARHGSPRG-LDPNPGDTLGFRIEGPGKRVYYAG  137



Lambda      K        H        a         alpha
   0.319    0.134    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00027400

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00022931

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432732 pfam12706, Lactamase_B_2, Beta-lactamase superfamily d...  115     5e-31


>CDD:432732 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain. 
 This family is part of the beta-lactamase superfamily and is 
related to pfam00753.
Length=196

 Score = 115 bits (290),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 63/253 (25%), Positives = 96/253 (38%), Gaps = 67/253 (26%)

Query  121  RVLFDPVFEDRCSPFSWLGPKRYTEVPCQIKDIPFIDAVVISHNHYDHLSHPTVKEIAKL  180
            R+L DP                    P +++D P IDAV+++H+HYDHL+   + ++ + 
Sbjct  2    RILIDPGP-------DLRQQALPALQPGRLRDDP-IDAVLLTHDHYDHLA--GLLDLREG  51

Query  181  HPNCHFFAPLGN----KEWFSSSGIK-----NMTEMDWWEERDVVLSPSKKPDTTVEEAT  231
             P    +APLG     +  F    +       + E+DW E   V                
Sbjct  52   RPR-PLYAPLGVLAHLRRNFPYLFLLEHYGVRVHEIDWGESFTV----------------  94

Query  232  GDLKSKPADIKARIGCLPCQHTSARGLLDREKTLWSSWYVESGGRKVYFAGDTGYRAVPE  291
                    D    +   P +H S RGL D        + +E  G++VY+AGDTGY     
Sbjct  95   -------GDGGLTVTATPARHGSPRGL-DPNPGDTLGFRIEGPGKRVYYAGDTGY-----  141

Query  292  LPDGVDDHAPEYDYPSCPAFKQVGEFRGPFDLGLIPIGAYAPRFIMSPMHADPHDAVEIF  351
                  D               +GE  G  DL L+  GA+    ++   H  P +AVE  
Sbjct  142  ----FPDE--------------IGERLGGADLLLLDGGAWRDDEMIHMGHMTPEEAVEAA  183

Query  352  RDTKCKRATAMHW  364
             D   +R   +H 
Sbjct  184  ADLGARRKVLIHI  196



Lambda      K        H        a         alpha
   0.319    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00022932

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  593     0.0  


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 593 bits (1532),  Expect = 0.0, Method: Composition-based stats.
 Identities = 215/481 (45%), Positives = 324/481 (67%), Gaps = 7/481 (1%)

Query  32   VADIIRSCLGPKAMLKMLLDPMGGIVLTNDGHAILREIEVSHPAAKSMIELSRTQDEEVG  91
            +ADI+R+ LGPK M KML++  G + +TNDG  IL+E+E+ HPAAK ++E ++ QDEEVG
Sbjct  1    LADIVRTSLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVG  60

Query  92   DGTTTVIILAGEILAQALPQLERNIHPVVIIQAFKRALADALAIVEEV-SLPVDIDDDKA  150
            DGTTTV++LAGE+L +A   L   +HP  II+ +++AL  AL I++ + S+PV+  D + 
Sbjct  61   DGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSIISIPVEDVDRED  120

Query  151  MYTLIQSSIGTKFVSRWSELMCSLALKAVRTVSFDAGGGKREVDIKRYARIEKIPGGQIE  210
            +  + ++S+ +K +SR S+ +  L + AV  +  +        D+     + KI GG +E
Sbjct  121  LLKVARTSLSSKIISRESDFLAKLVVDAVLAIPKND----GSFDLGN-IGVVKILGGSLE  175

Query  211  DSEVIDGVMINKDITHPKMRRRIENPRIILLDCPLEYKKGESQTNIEISKEDDWNRILQI  270
            DSE++DGV+++K   HP M +R+EN +++LL+C LEY+K E++  + +S  +   R L+ 
Sbjct  176  DSELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKA  235

Query  271  EEEQVKHMCDAILALKPDVVFTEKGVSDLAQHFLMKANVTAIRRVRKTDNNRIARATGAT  330
            EEEQ+  + + I+    +VV  +KG+ DLA HFL K  + A+RRV+K D  R+A+ATGA 
Sbjct  236  EEEQILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRVKKRDLERLAKATGAR  295

Query  331  IVNRVDDLQESDVGTRCGLFEIEKIGDEYFTFLRKCQEPKACTILLRGPSKDILNEIERN  390
             V+ +DDL   D+GT  G  E EKIGDE +TF+  C+ PKA TILLRG +  +L+EIER+
Sbjct  296  AVSSLDDLTPDDLGT-AGKVEEEKIGDEKYTFIEGCKSPKAATILLRGATDHVLDEIERS  354

Query  391  LQDAMSVARNVIFHPRLCPGGGAIEMAVSVKLSQLAKSIEGVQQWPYKAVADAMEVIPRT  450
            + DA+ V +N I  PR+ PGGGA+EM ++  L + AKS+ G +Q   +A A+A+EVIP+T
Sbjct  355  IHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEALEVIPKT  414

Query  451  LAQNAGASPIRVLTRLRAKHVEGQHTWGLDGDSGNLVDMKEYGVWEPEAVKLQSIKTAVE  510
            LA+NAG  PI VL  LRA H  G+   G+D ++G ++DMKE GV +P  VK Q++K+A E
Sbjct  415  LAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEIIDMKEAGVVDPLKVKRQALKSATE  474

Query  511  V  511
             
Sbjct  475  A  475



Lambda      K        H        a         alpha
   0.319    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0791    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00022933

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  456     1e-159


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 456 bits (1175),  Expect = 1e-159, Method: Composition-based stats.
 Identities = 163/375 (43%), Positives = 246/375 (66%), Gaps = 6/375 (2%)

Query  1    MYTLIQSSIGTKFVSRWSELMCSLALKAVRTVSFDAGGGKREVDIKRYARIEKIPGGQIE  60
            +  + ++S+ +K +SR S+ +  L + AV  +  +        D+     + KI GG +E
Sbjct  121  LLKVARTSLSSKIISRESDFLAKLVVDAVLAIPKND----GSFDLGN-IGVVKILGGSLE  175

Query  61   DSEVIDGVMINKDITHPKMRRRIENPRIILLDCPLEYKKGESQTNIEISKEDDWNRILQI  120
            DSE++DGV+++K   HP M +R+EN +++LL+C LEY+K E++  + +S  +   R L+ 
Sbjct  176  DSELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKA  235

Query  121  EEEQVKHMCDAILALKPDVVFTEKGVSDLAQHFLMKANVTAIRRVRKTDNNRIARATGAT  180
            EEEQ+  + + I+    +VV  +KG+ DLA HFL K  + A+RRV+K D  R+A+ATGA 
Sbjct  236  EEEQILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRVKKRDLERLAKATGAR  295

Query  181  IVNRVDDLQESDVGTRCGLFEIEKIGDEYFTFLRKCQEPKACTILLRGPSKDILNEIERN  240
             V+ +DDL   D+GT  G  E EKIGDE +TF+  C+ PKA TILLRG +  +L+EIER+
Sbjct  296  AVSSLDDLTPDDLGT-AGKVEEEKIGDEKYTFIEGCKSPKAATILLRGATDHVLDEIERS  354

Query  241  LQDAMSVARNVIFHPRLCPGGGAIEMAVSVKLSQLAKSIEGVQQWPYKAVADAMEVIPRT  300
            + DA+ V +N I  PR+ PGGGA+EM ++  L + AKS+ G +Q   +A A+A+EVIP+T
Sbjct  355  IHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEALEVIPKT  414

Query  301  LAQNAGASPIRVLTRLRAKHVEGQHTWGLDGDSGNLVDMKEYGVWEPEAVKLQSIKTAVE  360
            LA+NAG  PI VL  LRA H  G+   G+D ++G ++DMKE GV +P  VK Q++K+A E
Sbjct  415  LAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEIIDMKEAGVVDPLKVKRQALKSATE  474

Query  361  SACLLLRVDDICSGK  375
            +A  +LR+DDI   K
Sbjct  475  AASTILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.318    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00022934

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  456     1e-159


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 456 bits (1175),  Expect = 1e-159, Method: Composition-based stats.
 Identities = 163/375 (43%), Positives = 246/375 (66%), Gaps = 6/375 (2%)

Query  1    MYTLIQSSIGTKFVSRWSELMCSLALKAVRTVSFDAGGGKREVDIKRYARIEKIPGGQIE  60
            +  + ++S+ +K +SR S+ +  L + AV  +  +        D+     + KI GG +E
Sbjct  121  LLKVARTSLSSKIISRESDFLAKLVVDAVLAIPKND----GSFDLGN-IGVVKILGGSLE  175

Query  61   DSEVIDGVMINKDITHPKMRRRIENPRIILLDCPLEYKKGESQTNIEISKEDDWNRILQI  120
            DSE++DGV+++K   HP M +R+EN +++LL+C LEY+K E++  + +S  +   R L+ 
Sbjct  176  DSELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKA  235

Query  121  EEEQVKHMCDAILALKPDVVFTEKGVSDLAQHFLMKANVTAIRRVRKTDNNRIARATGAT  180
            EEEQ+  + + I+    +VV  +KG+ DLA HFL K  + A+RRV+K D  R+A+ATGA 
Sbjct  236  EEEQILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRVKKRDLERLAKATGAR  295

Query  181  IVNRVDDLQESDVGTRCGLFEIEKIGDEYFTFLRKCQEPKACTILLRGPSKDILNEIERN  240
             V+ +DDL   D+GT  G  E EKIGDE +TF+  C+ PKA TILLRG +  +L+EIER+
Sbjct  296  AVSSLDDLTPDDLGT-AGKVEEEKIGDEKYTFIEGCKSPKAATILLRGATDHVLDEIERS  354

Query  241  LQDAMSVARNVIFHPRLCPGGGAIEMAVSVKLSQLAKSIEGVQQWPYKAVADAMEVIPRT  300
            + DA+ V +N I  PR+ PGGGA+EM ++  L + AKS+ G +Q   +A A+A+EVIP+T
Sbjct  355  IHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEALEVIPKT  414

Query  301  LAQNAGASPIRVLTRLRAKHVEGQHTWGLDGDSGNLVDMKEYGVWEPEAVKLQSIKTAVE  360
            LA+NAG  PI VL  LRA H  G+   G+D ++G ++DMKE GV +P  VK Q++K+A E
Sbjct  415  LAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEIIDMKEAGVVDPLKVKRQALKSATE  474

Query  361  SACLLLRVDDICSGK  375
            +A  +LR+DDI   K
Sbjct  475  AASTILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.318    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00022935

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  613     0.0  


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 613 bits (1584),  Expect = 0.0, Method: Composition-based stats.
 Identities = 222/495 (45%), Positives = 334/495 (67%), Gaps = 7/495 (1%)

Query  32   VADIIRSCLGPKAMLKMLLDPMGGIVLTNDGHAILREIEVSHPAAKSMIELSRTQDEEVG  91
            +ADI+R+ LGPK M KML++  G + +TNDG  IL+E+E+ HPAAK ++E ++ QDEEVG
Sbjct  1    LADIVRTSLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVG  60

Query  92   DGTTTVIILAGEILAQALPQLERNIHPVVIIQAFKRALADALAIVEEV-SLPVDIDDDKA  150
            DGTTTV++LAGE+L +A   L   +HP  II+ +++AL  AL I++ + S+PV+  D + 
Sbjct  61   DGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSIISIPVEDVDRED  120

Query  151  MYTLIQSSIGTKFVSRWSELMCSLALKAVRTVSFDAGGGKREVDIKRYARIEKIPGGQIE  210
            +  + ++S+ +K +SR S+ +  L + AV  +  +        D+     + KI GG +E
Sbjct  121  LLKVARTSLSSKIISRESDFLAKLVVDAVLAIPKND----GSFDLGN-IGVVKILGGSLE  175

Query  211  DSEVIDGVMINKDITHPKMRRRIENPRIILLDCPLEYKKGESQTNIEISKEDDWNRILQI  270
            DSE++DGV+++K   HP M +R+EN +++LL+C LEY+K E++  + +S  +   R L+ 
Sbjct  176  DSELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKA  235

Query  271  EEEQVKHMCDAILALKPDVVFTEKGVSDLAQHFLMKANVTAIRRVRKTDNNRIARATGAT  330
            EEEQ+  + + I+    +VV  +KG+ DLA HFL K  + A+RRV+K D  R+A+ATGA 
Sbjct  236  EEEQILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRVKKRDLERLAKATGAR  295

Query  331  IVNRVDDLQESDVGTRCGLFEIEKIGDEYFTFLRKCQEPKACTILLRGPSKDILNEIERN  390
             V+ +DDL   D+GT  G  E EKIGDE +TF+  C+ PKA TILLRG +  +L+EIER+
Sbjct  296  AVSSLDDLTPDDLGT-AGKVEEEKIGDEKYTFIEGCKSPKAATILLRGATDHVLDEIERS  354

Query  391  LQDAMSVARNVIFHPRLCPGGGAIEMAVSVKLSQLAKSIEGVQQWPYKAVADAMEVIPRT  450
            + DA+ V +N I  PR+ PGGGA+EM ++  L + AKS+ G +Q   +A A+A+EVIP+T
Sbjct  355  IHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEALEVIPKT  414

Query  451  LAQNAGASPIRVLTRLRAKHVEGQHTWGLDGDSGNLVDMKEYGVWEPEAVKLQSIKTAVE  510
            LA+NAG  PI VL  LRA H  G+   G+D ++G ++DMKE GV +P  VK Q++K+A E
Sbjct  415  LAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEIIDMKEAGVVDPLKVKRQALKSATE  474

Query  511  SACLLLRVDDICSGK  525
            +A  +LR+DDI   K
Sbjct  475  AASTILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.318    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 679815634


Query= TCONS_00022936

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  290     2e-96


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 290 bits (745),  Expect = 2e-96, Method: Composition-based stats.
 Identities = 99/257 (39%), Positives = 165/257 (64%), Gaps = 6/257 (2%)

Query  1    MLKMLLDPMGGIVLTNDGHAILREIEVSHPAAKSMIELSRTQDEEVGDGTTTVIILAGEI  60
            M KML++  G + +TNDG  IL+E+E+ HPAAK ++E ++ QDEEVGDGTTTV++LAGE+
Sbjct  14   MDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVGDGTTTVVVLAGEL  73

Query  61   LAQALPQLERNIHPVVIIQAFKRALADALAIVEEV-SLPVDIDDDKAMYTLIQSSIGTKF  119
            L +A   L   +HP  II+ +++AL  AL I++ + S+PV+  D + +  + ++S+ +K 
Sbjct  74   LEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSIISIPVEDVDREDLLKVARTSLSSKI  133

Query  120  VSRWSELMCSLALKAVRTVSFDAGGGKREVDIKRYARIEKIPGGQIEDSEVIDGVMINKD  179
            +SR S+ +  L + AV  +  +        D+     + KI GG +EDSE++DGV+++K 
Sbjct  134  ISRESDFLAKLVVDAVLAIPKND----GSFDLGN-IGVVKILGGSLEDSELVDGVVLDKG  188

Query  180  ITHPKMRRRIENPRIILLDCPLEYKKGESQTNIEISKEDDWNRILQIEEEQVKHMCDAIL  239
              HP M +R+EN +++LL+C LEY+K E++  + +S  +   R L+ EEEQ+  + + I+
Sbjct  189  PLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKAEEEQILEIVEKII  248

Query  240  ALKPDVVFTEKGVSGKA  256
                +VV  +KG+   A
Sbjct  249  DSGVNVVVCQKGIDDLA  265



Lambda      K        H        a         alpha
   0.318    0.136    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00027404

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  311     3e-104


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 311 bits (800),  Expect = 3e-104, Method: Composition-based stats.
 Identities = 107/270 (40%), Positives = 176/270 (65%), Gaps = 6/270 (2%)

Query  32   VADIIRSCLGPKAMLKMLLDPMGGIVLTNDGHAILREIEVSHPAAKSMIELSRTQDEEVG  91
            +ADI+R+ LGPK M KML++  G + +TNDG  IL+E+E+ HPAAK ++E ++ QDEEVG
Sbjct  1    LADIVRTSLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVG  60

Query  92   DGTTTVIILAGEILAQALPQLERNIHPVVIIQAFKRALADALAIVEEV-SLPVDIDDDKA  150
            DGTTTV++LAGE+L +A   L   +HP  II+ +++AL  AL I++ + S+PV+  D + 
Sbjct  61   DGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSIISIPVEDVDRED  120

Query  151  MYTLIQSSIGTKFVSRWSELMCSLALKAVRTVSFDAGGGKREVDIKRYARIEKIPGGQIE  210
            +  + ++S+ +K +SR S+ +  L + AV  +  +        D+     + KI GG +E
Sbjct  121  LLKVARTSLSSKIISRESDFLAKLVVDAVLAIPKND----GSFDLGN-IGVVKILGGSLE  175

Query  211  DSEVIDGVMINKDITHPKMRRRIENPRIILLDCPLEYKKGESQTNIEISKEDDWNRILQI  270
            DSE++DGV+++K   HP M +R+EN +++LL+C LEY+K E++  + +S  +   R L+ 
Sbjct  176  DSELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKA  235

Query  271  EEEQVKHMCDAILALKPDVVFTEKGVSGKA  300
            EEEQ+  + + I+    +VV  +KG+   A
Sbjct  236  EEEQILEIVEKIIDSGVNVVVCQKGIDDLA  265



Lambda      K        H        a         alpha
   0.318    0.135    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00027405

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  153     3e-45


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 153 bits (388),  Expect = 3e-45, Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 88/150 (59%), Gaps = 5/150 (3%)

Query  1    MYTLIQSSIGTKFVSRWSELMCSLALKAVRTVSFDAGGGKREVDIKRYARIEKIPGGQIE  60
            +  + ++S+ +K +SR S+ +  L + AV  +  +        D+     + KI GG +E
Sbjct  121  LLKVARTSLSSKIISRESDFLAKLVVDAVLAIPKND----GSFDLGN-IGVVKILGGSLE  175

Query  61   DSEVIDGVMINKDITHPKMRRRIENPRIILLDCPLEYKKGESQTNIEISKEDDWNRILQI  120
            DSE++DGV+++K   HP M +R+EN +++LL+C LEY+K E++  + +S  +   R L+ 
Sbjct  176  DSELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKA  235

Query  121  EEEQVKHMCDAILALKPDVVFTEKGVSGKA  150
            EEEQ+  + + I+    +VV  +KG+   A
Sbjct  236  EEEQILEIVEKIIDSGVNVVVCQKGIDDLA  265



Lambda      K        H        a         alpha
   0.319    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00022937

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  617     0.0  


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 617 bits (1593),  Expect = 0.0, Method: Composition-based stats.
 Identities = 222/495 (45%), Positives = 334/495 (67%), Gaps = 7/495 (1%)

Query  41   VADIIRSCLGPKAMLKMLLDPMGGIVLTNDGHAILREIEVSHPAAKSMIELSRTQDEEVG  100
            +ADI+R+ LGPK M KML++  G + +TNDG  IL+E+E+ HPAAK ++E ++ QDEEVG
Sbjct  1    LADIVRTSLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVG  60

Query  101  DGTTTVIILAGEILAQALPQLERNIHPVVIIQAFKRALADALAIVEEV-SLPVDIDDDKA  159
            DGTTTV++LAGE+L +A   L   +HP  II+ +++AL  AL I++ + S+PV+  D + 
Sbjct  61   DGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSIISIPVEDVDRED  120

Query  160  MYTLIQSSIGTKFVSRWSELMCSLALKAVRTVSFDAGGGKREVDIKRYARIEKIPGGQIE  219
            +  + ++S+ +K +SR S+ +  L + AV  +  +        D+     + KI GG +E
Sbjct  121  LLKVARTSLSSKIISRESDFLAKLVVDAVLAIPKND----GSFDLGN-IGVVKILGGSLE  175

Query  220  DSEVIDGVMINKDITHPKMRRRIENPRIILLDCPLEYKKGESQTNIEISKEDDWNRILQI  279
            DSE++DGV+++K   HP M +R+EN +++LL+C LEY+K E++  + +S  +   R L+ 
Sbjct  176  DSELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKA  235

Query  280  EEEQVKHMCDAILALKPDVVFTEKGVSDLAQHFLMKANVTAIRRVRKTDNNRIARATGAT  339
            EEEQ+  + + I+    +VV  +KG+ DLA HFL K  + A+RRV+K D  R+A+ATGA 
Sbjct  236  EEEQILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRVKKRDLERLAKATGAR  295

Query  340  IVNRVDDLQESDVGTRCGLFEIEKIGDEYFTFLRKCQEPKACTILLRGPSKDILNEIERN  399
             V+ +DDL   D+GT  G  E EKIGDE +TF+  C+ PKA TILLRG +  +L+EIER+
Sbjct  296  AVSSLDDLTPDDLGT-AGKVEEEKIGDEKYTFIEGCKSPKAATILLRGATDHVLDEIERS  354

Query  400  LQDAMSVARNVIFHPRLCPGGGAIEMAVSVKLSQLAKSIEGVQQWPYKAVADAMEVIPRT  459
            + DA+ V +N I  PR+ PGGGA+EM ++  L + AKS+ G +Q   +A A+A+EVIP+T
Sbjct  355  IHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEALEVIPKT  414

Query  460  LAQNAGASPIRVLTRLRAKHVEGQHTWGLDGDSGNLVDMKEYGVWEPEAVKLQSIKTAVE  519
            LA+NAG  PI VL  LRA H  G+   G+D ++G ++DMKE GV +P  VK Q++K+A E
Sbjct  415  LAENAGLDPIEVLAELRAAHASGEKHAGIDVETGEIIDMKEAGVVDPLKVKRQALKSATE  474

Query  520  SACLLLRVDDICSGK  534
            +A  +LR+DDI   K
Sbjct  475  AASTILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.319    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00022938

Length=1078
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  111     5e-29


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 111 bits (279),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 48/130 (37%), Positives = 63/130 (48%), Gaps = 23/130 (18%)

Query  820  RIRKEYEILETSLPPGIFVRTWESRIDILRVLIIGPQGTPYEYAPFVIDFQFPEDYPNKP  879
            R++KE + L    PPGI     +  +   +V IIGP GTPYE   F +  +FPEDYP KP
Sbjct  1    RLQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKP  60

Query  880  P-----ASFFHSWTNGQGKVNPNLYEDGRICLSILGTWPTKSPEESWSPVKSTALQILVS  934
            P        +H          PN+   G +CL IL        +E WSP   T  Q+L+S
Sbjct  61   PKVKFTTKIYH----------PNVDSSGEVCLDILK-------DERWSPA-LTLEQVLLS  102

Query  935  IMGLVLVKNP  944
            I  L+   NP
Sbjct  103  IQSLLSEPNP  112



Lambda      K        H        a         alpha
   0.315    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390390232


Query= TCONS_00027407

Length=846
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  111     4e-29


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 111 bits (279),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 48/130 (37%), Positives = 63/130 (48%), Gaps = 23/130 (18%)

Query  588  RIRKEYEILETSLPPGIFVRTWESRIDILRVLIIGPQGTPYEYAPFVIDFQFPEDYPNKP  647
            R++KE + L    PPGI     +  +   +V IIGP GTPYE   F +  +FPEDYP KP
Sbjct  1    RLQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKP  60

Query  648  P-----ASFFHSWTNGQGKVNPNLYEDGRICLSILGTWPTKSPEESWSPVKSTALQILVS  702
            P        +H          PN+   G +CL IL        +E WSP   T  Q+L+S
Sbjct  61   PKVKFTTKIYH----------PNVDSSGEVCLDILK-------DERWSPA-LTLEQVLLS  102

Query  703  IMGLVLVKNP  712
            I  L+   NP
Sbjct  103  IQSLLSEPNP  112



Lambda      K        H        a         alpha
   0.316    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1078071014


Query= TCONS_00022942

Length=846
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  111     4e-29


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 111 bits (279),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 48/130 (37%), Positives = 63/130 (48%), Gaps = 23/130 (18%)

Query  588  RIRKEYEILETSLPPGIFVRTWESRIDILRVLIIGPQGTPYEYAPFVIDFQFPEDYPNKP  647
            R++KE + L    PPGI     +  +   +V IIGP GTPYE   F +  +FPEDYP KP
Sbjct  1    RLQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKP  60

Query  648  P-----ASFFHSWTNGQGKVNPNLYEDGRICLSILGTWPTKSPEESWSPVKSTALQILVS  702
            P        +H          PN+   G +CL IL        +E WSP   T  Q+L+S
Sbjct  61   PKVKFTTKIYH----------PNVDSSGEVCLDILK-------DERWSPA-LTLEQVLLS  102

Query  703  IMGLVLVKNP  712
            I  L+   NP
Sbjct  103  IQSLLSEPNP  112



Lambda      K        H        a         alpha
   0.316    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1078071014


Query= TCONS_00027409

Length=1078
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  111     5e-29


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 111 bits (279),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 48/130 (37%), Positives = 63/130 (48%), Gaps = 23/130 (18%)

Query  820  RIRKEYEILETSLPPGIFVRTWESRIDILRVLIIGPQGTPYEYAPFVIDFQFPEDYPNKP  879
            R++KE + L    PPGI     +  +   +V IIGP GTPYE   F +  +FPEDYP KP
Sbjct  1    RLQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKP  60

Query  880  P-----ASFFHSWTNGQGKVNPNLYEDGRICLSILGTWPTKSPEESWSPVKSTALQILVS  934
            P        +H          PN+   G +CL IL        +E WSP   T  Q+L+S
Sbjct  61   PKVKFTTKIYH----------PNVDSSGEVCLDILK-------DERWSPA-LTLEQVLLS  102

Query  935  IMGLVLVKNP  944
            I  L+   NP
Sbjct  103  IQSLLSEPNP  112



Lambda      K        H        a         alpha
   0.315    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390390232


Query= TCONS_00027408

Length=1062
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  111     4e-29


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 111 bits (280),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 48/130 (37%), Positives = 63/130 (48%), Gaps = 23/130 (18%)

Query  804  RIRKEYEILETSLPPGIFVRTWESRIDILRVLIIGPQGTPYEYAPFVIDFQFPEDYPNKP  863
            R++KE + L    PPGI     +  +   +V IIGP GTPYE   F +  +FPEDYP KP
Sbjct  1    RLQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKP  60

Query  864  P-----ASFFHSWTNGQGKVNPNLYEDGRICLSILGTWPTKSPEESWSPVKSTALQILVS  918
            P        +H          PN+   G +CL IL        +E WSP   T  Q+L+S
Sbjct  61   PKVKFTTKIYH----------PNVDSSGEVCLDILK-------DERWSPA-LTLEQVLLS  102

Query  919  IMGLVLVKNP  928
            I  L+   NP
Sbjct  103  IQSLLSEPNP  112



Lambda      K        H        a         alpha
   0.315    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1367736216


Query= TCONS_00022939

Length=1040
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  111     5e-29


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 111 bits (279),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 48/130 (37%), Positives = 63/130 (48%), Gaps = 23/130 (18%)

Query  804  RIRKEYEILETSLPPGIFVRTWESRIDILRVLIIGPQGTPYEYAPFVIDFQFPEDYPNKP  863
            R++KE + L    PPGI     +  +   +V IIGP GTPYE   F +  +FPEDYP KP
Sbjct  1    RLQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKP  60

Query  864  P-----ASFFHSWTNGQGKVNPNLYEDGRICLSILGTWPTKSPEESWSPVKSTALQILVS  918
            P        +H          PN+   G +CL IL        +E WSP   T  Q+L+S
Sbjct  61   PKVKFTTKIYH----------PNVDSSGEVCLDILK-------DERWSPA-LTLEQVLLS  102

Query  919  IMGLVLVKNP  928
            I  L+   NP
Sbjct  103  IQSLLSEPNP  112



Lambda      K        H        a         alpha
   0.315    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1336586944


Query= TCONS_00022941

Length=758
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  110     8e-29


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 110 bits (277),  Expect = 8e-29, Method: Composition-based stats.
 Identities = 48/130 (37%), Positives = 63/130 (48%), Gaps = 23/130 (18%)

Query  588  RIRKEYEILETSLPPGIFVRTWESRIDILRVLIIGPQGTPYEYAPFVIDFQFPEDYPNKP  647
            R++KE + L    PPGI     +  +   +V IIGP GTPYE   F +  +FPEDYP KP
Sbjct  1    RLQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKP  60

Query  648  P-----ASFFHSWTNGQGKVNPNLYEDGRICLSILGTWPTKSPEESWSPVKSTALQILVS  702
            P        +H          PN+   G +CL IL        +E WSP   T  Q+L+S
Sbjct  61   PKVKFTTKIYH----------PNVDSSGEVCLDILK-------DERWSPA-LTLEQVLLS  102

Query  703  IMGLVLVKNP  712
            I  L+   NP
Sbjct  103  IQSLLSEPNP  112



Lambda      K        H        a         alpha
   0.317    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 966220928


Query= TCONS_00022940

Length=990
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  110     8e-29


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 110 bits (277),  Expect = 8e-29, Method: Composition-based stats.
 Identities = 48/130 (37%), Positives = 63/130 (48%), Gaps = 23/130 (18%)

Query  820  RIRKEYEILETSLPPGIFVRTWESRIDILRVLIIGPQGTPYEYAPFVIDFQFPEDYPNKP  879
            R++KE + L    PPGI     +  +   +V IIGP GTPYE   F +  +FPEDYP KP
Sbjct  1    RLQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKP  60

Query  880  P-----ASFFHSWTNGQGKVNPNLYEDGRICLSILGTWPTKSPEESWSPVKSTALQILVS  934
            P        +H          PN+   G +CL IL        +E WSP   T  Q+L+S
Sbjct  61   PKVKFTTKIYH----------PNVDSSGEVCLDILK-------DERWSPA-LTLEQVLLS  102

Query  935  IMGLVLVKNP  944
            I  L+   NP
Sbjct  103  IQSLLSEPNP  112



Lambda      K        H        a         alpha
   0.316    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1265793144


Query= TCONS_00022943

Length=846
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  111     4e-29


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 111 bits (279),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 48/130 (37%), Positives = 63/130 (48%), Gaps = 23/130 (18%)

Query  588  RIRKEYEILETSLPPGIFVRTWESRIDILRVLIIGPQGTPYEYAPFVIDFQFPEDYPNKP  647
            R++KE + L    PPGI     +  +   +V IIGP GTPYE   F +  +FPEDYP KP
Sbjct  1    RLQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKP  60

Query  648  P-----ASFFHSWTNGQGKVNPNLYEDGRICLSILGTWPTKSPEESWSPVKSTALQILVS  702
            P        +H          PN+   G +CL IL        +E WSP   T  Q+L+S
Sbjct  61   PKVKFTTKIYH----------PNVDSSGEVCLDILK-------DERWSPA-LTLEQVLLS  102

Query  703  IMGLVLVKNP  712
            I  L+   NP
Sbjct  103  IQSLLSEPNP  112



Lambda      K        H        a         alpha
   0.316    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0725    0.140     1.90     42.6     43.6 

Effective search space used: 1078071014


Query= TCONS_00022945

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459887 pfam00645, zf-PARP, Poly(ADP-ribose) polymerase and DN...  97.8    1e-26


>CDD:459887 pfam00645, zf-PARP, Poly(ADP-ribose) polymerase and DNA-Ligase 
Zn-finger region.  Poly(ADP-ribose) polymerase is an important 
regulatory component of the cellular response to DNA damage. 
The amino-terminal region of Poly(ADP-ribose) polymerase 
consists of two PARP-type zinc fingers. This region acts 
as a DNA nick sensor.
Length=87

 Score = 97.8 bits (244),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 44/97 (45%), Positives = 52/97 (54%), Gaps = 15/97 (15%)

Query  7   EAASTGRAGCQNKECKEEKIKIGKGELRLGTWVDTERF-----QSFFWRHWGCVTPKIIA  61
           E A +GRA C  K CK+   KI KGELR+G  VD          S  W HWGC T K + 
Sbjct  1   EYAKSGRAKC--KGCKK---KIEKGELRIGKVVDFVPSPFFDGGSKRWYHWGCFTKKQLK  55

Query  62  NLNEAVEEASGDSKDLDAIDGFEELPSEYQEKVRKAL  98
           N  E  E       D D +DGF+EL  E QEK+RKA+
Sbjct  56  NRKETKEID-----DADDLDGFDELKDEDQEKIRKAI  87



Lambda      K        H        a         alpha
   0.305    0.125    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00022947

Length=140
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459887 pfam00645, zf-PARP, Poly(ADP-ribose) polymerase and DN...  102     4e-30


>CDD:459887 pfam00645, zf-PARP, Poly(ADP-ribose) polymerase and DNA-Ligase 
Zn-finger region.  Poly(ADP-ribose) polymerase is an important 
regulatory component of the cellular response to DNA damage. 
The amino-terminal region of Poly(ADP-ribose) polymerase 
consists of two PARP-type zinc fingers. This region acts 
as a DNA nick sensor.
Length=87

 Score = 102 bits (256),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 44/97 (45%), Positives = 52/97 (54%), Gaps = 15/97 (15%)

Query  7   EAASTGRAGCQNKECKEEKIKIGKGELRLGTWVDTERF-----QSFFWRHWGCVTPKIIA  61
           E A +GRA C  K CK+   KI KGELR+G  VD          S  W HWGC T K + 
Sbjct  1   EYAKSGRAKC--KGCKK---KIEKGELRIGKVVDFVPSPFFDGGSKRWYHWGCFTKKQLK  55

Query  62  NLNEAVEEASGDSKDLDAIDGFEELPSEYQEKVRKAL  98
           N  E  E       D D +DGF+EL  E QEK+RKA+
Sbjct  56  NRKETKEID-----DADDLDGFDELKDEDQEKIRKAI  87



Lambda      K        H        a         alpha
   0.312    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00022946

Length=148
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459887 pfam00645, zf-PARP, Poly(ADP-ribose) polymerase and DN...  101     1e-29


>CDD:459887 pfam00645, zf-PARP, Poly(ADP-ribose) polymerase and DNA-Ligase 
Zn-finger region.  Poly(ADP-ribose) polymerase is an important 
regulatory component of the cellular response to DNA damage. 
The amino-terminal region of Poly(ADP-ribose) polymerase 
consists of two PARP-type zinc fingers. This region acts 
as a DNA nick sensor.
Length=87

 Score = 101 bits (254),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 44/97 (45%), Positives = 52/97 (54%), Gaps = 15/97 (15%)

Query  7   EAASTGRAGCQNKECKEEKIKIGKGELRLGTWVDTERF-----QSFFWRHWGCVTPKIIA  61
           E A +GRA C  K CK+   KI KGELR+G  VD          S  W HWGC T K + 
Sbjct  1   EYAKSGRAKC--KGCKK---KIEKGELRIGKVVDFVPSPFFDGGSKRWYHWGCFTKKQLK  55

Query  62  NLNEAVEEASGDSKDLDAIDGFEELPSEYQEKVRKAL  98
           N  E  E       D D +DGF+EL  E QEK+RKA+
Sbjct  56  NRKETKEID-----DADDLDGFDELKDEDQEKIRKAI  87



Lambda      K        H        a         alpha
   0.313    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00022948

Length=268


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.122    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00022949

Length=363


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00022950

Length=446


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00027410

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00027411

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00022955

Length=391


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00022956

Length=648


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 818508450


Query= TCONS_00022953

Length=648


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 818508450


Query= TCONS_00022954

Length=391


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00027413

Length=764


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.119    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 974951840


Query= TCONS_00027414

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.342    0.147    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00022959

Length=764


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.119    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 974951840


Query= TCONS_00022958

Length=764


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.119    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 974951840


Query= TCONS_00022960

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00022961

Length=313


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00027415

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00022962

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00022963

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00022964

Length=109
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase. This...  110     3e-31


>CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase.  This is a 
family of glycosylphosphatidylinositol-anchored beta(1-3)glucanosyltransferases. 
The active site residues in the Aspergillus 
fumigatus example are the two glutamate residues at 160 
and 261.
Length=315

 Score = 110 bits (277),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 52/105 (50%), Positives = 65/105 (62%), Gaps = 2/105 (2%)

Query  3    ELGANAIRVYHVDPHANHDGCMKVLADAGIYLFVDLDTFDTQIEQTDPH--WNETQYDRF  60
            ELG N IRVY VDP  NHD CMK L+DAGIY+ +DL+T    I + DP   +N    +R+
Sbjct  65   ELGINTIRVYAVDPSLNHDECMKALSDAGIYVILDLNTPKESINRADPAGSYNVDYLERY  124

Query  61   KQVLDEFQKYENTAGVFVGNEVLTTKEGSAAAPYVLAAARDIKAY  105
              V+D F+ Y N  G F GNEV      + A+PYV AA RD+K Y
Sbjct  125  FAVIDAFKNYTNVLGFFAGNEVTNDASNTDASPYVKAAIRDMKQY  169



Lambda      K        H        a         alpha
   0.319    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00027416

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase. This...  330     9e-112


>CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase.  This is a 
family of glycosylphosphatidylinositol-anchored beta(1-3)glucanosyltransferases. 
The active site residues in the Aspergillus 
fumigatus example are the two glutamate residues at 160 
and 261.
Length=315

 Score = 330 bits (848),  Expect = 9e-112, Method: Composition-based stats.
 Identities = 138/336 (41%), Positives = 188/336 (56%), Gaps = 34/336 (10%)

Query  19   SPVAVEAVRTISAVGSRFFY-EDGTQYFLKGIAYQLVPD---------DPLINTEQCTRD  68
            +  A  A   I   G++FF  ++G Q+++KG+ YQ  P          DPL + + C RD
Sbjct  2    TSAAFAATPPIEIKGNKFFDSKNGEQFYIKGVDYQ--PGGSSENSTLVDPLADADVCKRD  59

Query  69   VKLMAELGANAIRVYHVDPHANHDGCMKVLADAGIYLFVDLDTFDTQIEQTDPH--WNET  126
            +    ELG N IRVY VDP  NHD CMK L+DAGIY+ +DL+T    I + DP   +N  
Sbjct  60   IPYFKELGINTIRVYAVDPSLNHDECMKALSDAGIYVILDLNTPKESINRADPAGSYNVD  119

Query  127  QYDRFKQVLDEFQKYENTAGVFVGNEVLTTKEGSAAAPYVLAAARDIKAYRDAQNYRNIP  186
              +R+  V+D F+ Y N  G F GNEV      + A+PYV AA RD+K Y     YR IP
Sbjct  120  YLERYFAVIDAFKNYTNVLGFFAGNEVTNDASNTDASPYVKAAIRDMKQYISKHKYRTIP  179

Query  187  VGYSAADIAELRPMLQNFLACAENPSDRLDFFALNAYEWCGDSGYVQSGYRELQRNASGY  246
            VGYSAAD A+ R  L ++ AC  +  +R DFF +N YEWCG S +  SGY +  +    Y
Sbjct  180  VGYSAADDADTRVQLADYFACG-DDDERADFFGINMYEWCGYSSFKTSGYDDRTKEFENY  238

Query  247  PIPIFFSETGCNAARPRTFDDQAAIFGEHMSDTWSGSMVYEWIQEVNDYGLVSYGPPAPN  306
             IP+FFSE GCN   PR F + +A++   M+  +SG +VYE+ +E N+YGLVS       
Sbjct  239  SIPVFFSEYGCNKVTPRPFTEVSALYSSDMTSVFSGGLVYEYSEEANNYGLVS-------  291

Query  307  APPTDTLVYDGFTRKGVPTPVSPDFHNLKTQWATLS  342
                     DG     V      DF+NLK+++A +S
Sbjct  292  --------IDG---DDV-VTTLADFNNLKSEYAKIS  315



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00027417

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase. This...  330     9e-112


>CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase.  This is a 
family of glycosylphosphatidylinositol-anchored beta(1-3)glucanosyltransferases. 
The active site residues in the Aspergillus 
fumigatus example are the two glutamate residues at 160 
and 261.
Length=315

 Score = 330 bits (848),  Expect = 9e-112, Method: Composition-based stats.
 Identities = 138/336 (41%), Positives = 188/336 (56%), Gaps = 34/336 (10%)

Query  19   SPVAVEAVRTISAVGSRFFY-EDGTQYFLKGIAYQLVPD---------DPLINTEQCTRD  68
            +  A  A   I   G++FF  ++G Q+++KG+ YQ  P          DPL + + C RD
Sbjct  2    TSAAFAATPPIEIKGNKFFDSKNGEQFYIKGVDYQ--PGGSSENSTLVDPLADADVCKRD  59

Query  69   VKLMAELGANAIRVYHVDPHANHDGCMKVLADAGIYLFVDLDTFDTQIEQTDPH--WNET  126
            +    ELG N IRVY VDP  NHD CMK L+DAGIY+ +DL+T    I + DP   +N  
Sbjct  60   IPYFKELGINTIRVYAVDPSLNHDECMKALSDAGIYVILDLNTPKESINRADPAGSYNVD  119

Query  127  QYDRFKQVLDEFQKYENTAGVFVGNEVLTTKEGSAAAPYVLAAARDIKAYRDAQNYRNIP  186
              +R+  V+D F+ Y N  G F GNEV      + A+PYV AA RD+K Y     YR IP
Sbjct  120  YLERYFAVIDAFKNYTNVLGFFAGNEVTNDASNTDASPYVKAAIRDMKQYISKHKYRTIP  179

Query  187  VGYSAADIAELRPMLQNFLACAENPSDRLDFFALNAYEWCGDSGYVQSGYRELQRNASGY  246
            VGYSAAD A+ R  L ++ AC  +  +R DFF +N YEWCG S +  SGY +  +    Y
Sbjct  180  VGYSAADDADTRVQLADYFACG-DDDERADFFGINMYEWCGYSSFKTSGYDDRTKEFENY  238

Query  247  PIPIFFSETGCNAARPRTFDDQAAIFGEHMSDTWSGSMVYEWIQEVNDYGLVSYGPPAPN  306
             IP+FFSE GCN   PR F + +A++   M+  +SG +VYE+ +E N+YGLVS       
Sbjct  239  SIPVFFSEYGCNKVTPRPFTEVSALYSSDMTSVFSGGLVYEYSEEANNYGLVS-------  291

Query  307  APPTDTLVYDGFTRKGVPTPVSPDFHNLKTQWATLS  342
                     DG     V      DF+NLK+++A +S
Sbjct  292  --------IDG---DDV-VTTLADFNNLKSEYAKIS  315



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00022966

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase. This...  330     9e-112


>CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase.  This is a 
family of glycosylphosphatidylinositol-anchored beta(1-3)glucanosyltransferases. 
The active site residues in the Aspergillus 
fumigatus example are the two glutamate residues at 160 
and 261.
Length=315

 Score = 330 bits (848),  Expect = 9e-112, Method: Composition-based stats.
 Identities = 138/336 (41%), Positives = 188/336 (56%), Gaps = 34/336 (10%)

Query  19   SPVAVEAVRTISAVGSRFFY-EDGTQYFLKGIAYQLVPD---------DPLINTEQCTRD  68
            +  A  A   I   G++FF  ++G Q+++KG+ YQ  P          DPL + + C RD
Sbjct  2    TSAAFAATPPIEIKGNKFFDSKNGEQFYIKGVDYQ--PGGSSENSTLVDPLADADVCKRD  59

Query  69   VKLMAELGANAIRVYHVDPHANHDGCMKVLADAGIYLFVDLDTFDTQIEQTDPH--WNET  126
            +    ELG N IRVY VDP  NHD CMK L+DAGIY+ +DL+T    I + DP   +N  
Sbjct  60   IPYFKELGINTIRVYAVDPSLNHDECMKALSDAGIYVILDLNTPKESINRADPAGSYNVD  119

Query  127  QYDRFKQVLDEFQKYENTAGVFVGNEVLTTKEGSAAAPYVLAAARDIKAYRDAQNYRNIP  186
              +R+  V+D F+ Y N  G F GNEV      + A+PYV AA RD+K Y     YR IP
Sbjct  120  YLERYFAVIDAFKNYTNVLGFFAGNEVTNDASNTDASPYVKAAIRDMKQYISKHKYRTIP  179

Query  187  VGYSAADIAELRPMLQNFLACAENPSDRLDFFALNAYEWCGDSGYVQSGYRELQRNASGY  246
            VGYSAAD A+ R  L ++ AC  +  +R DFF +N YEWCG S +  SGY +  +    Y
Sbjct  180  VGYSAADDADTRVQLADYFACG-DDDERADFFGINMYEWCGYSSFKTSGYDDRTKEFENY  238

Query  247  PIPIFFSETGCNAARPRTFDDQAAIFGEHMSDTWSGSMVYEWIQEVNDYGLVSYGPPAPN  306
             IP+FFSE GCN   PR F + +A++   M+  +SG +VYE+ +E N+YGLVS       
Sbjct  239  SIPVFFSEYGCNKVTPRPFTEVSALYSSDMTSVFSGGLVYEYSEEANNYGLVS-------  291

Query  307  APPTDTLVYDGFTRKGVPTPVSPDFHNLKTQWATLS  342
                     DG     V      DF+NLK+++A +S
Sbjct  292  --------IDG---DDV-VTTLADFNNLKSEYAKIS  315



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00022965

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase. This...  330     9e-112


>CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase.  This is a 
family of glycosylphosphatidylinositol-anchored beta(1-3)glucanosyltransferases. 
The active site residues in the Aspergillus 
fumigatus example are the two glutamate residues at 160 
and 261.
Length=315

 Score = 330 bits (848),  Expect = 9e-112, Method: Composition-based stats.
 Identities = 138/336 (41%), Positives = 188/336 (56%), Gaps = 34/336 (10%)

Query  19   SPVAVEAVRTISAVGSRFFY-EDGTQYFLKGIAYQLVPD---------DPLINTEQCTRD  68
            +  A  A   I   G++FF  ++G Q+++KG+ YQ  P          DPL + + C RD
Sbjct  2    TSAAFAATPPIEIKGNKFFDSKNGEQFYIKGVDYQ--PGGSSENSTLVDPLADADVCKRD  59

Query  69   VKLMAELGANAIRVYHVDPHANHDGCMKVLADAGIYLFVDLDTFDTQIEQTDPH--WNET  126
            +    ELG N IRVY VDP  NHD CMK L+DAGIY+ +DL+T    I + DP   +N  
Sbjct  60   IPYFKELGINTIRVYAVDPSLNHDECMKALSDAGIYVILDLNTPKESINRADPAGSYNVD  119

Query  127  QYDRFKQVLDEFQKYENTAGVFVGNEVLTTKEGSAAAPYVLAAARDIKAYRDAQNYRNIP  186
              +R+  V+D F+ Y N  G F GNEV      + A+PYV AA RD+K Y     YR IP
Sbjct  120  YLERYFAVIDAFKNYTNVLGFFAGNEVTNDASNTDASPYVKAAIRDMKQYISKHKYRTIP  179

Query  187  VGYSAADIAELRPMLQNFLACAENPSDRLDFFALNAYEWCGDSGYVQSGYRELQRNASGY  246
            VGYSAAD A+ R  L ++ AC  +  +R DFF +N YEWCG S +  SGY +  +    Y
Sbjct  180  VGYSAADDADTRVQLADYFACG-DDDERADFFGINMYEWCGYSSFKTSGYDDRTKEFENY  238

Query  247  PIPIFFSETGCNAARPRTFDDQAAIFGEHMSDTWSGSMVYEWIQEVNDYGLVSYGPPAPN  306
             IP+FFSE GCN   PR F + +A++   M+  +SG +VYE+ +E N+YGLVS       
Sbjct  239  SIPVFFSEYGCNKVTPRPFTEVSALYSSDMTSVFSGGLVYEYSEEANNYGLVS-------  291

Query  307  APPTDTLVYDGFTRKGVPTPVSPDFHNLKTQWATLS  342
                     DG     V      DF+NLK+++A +S
Sbjct  292  --------IDG---DDV-VTTLADFNNLKSEYAKIS  315



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00022967

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase. This...  330     9e-112


>CDD:397351 pfam03198, Glyco_hydro_72, Glucanosyltransferase.  This is a 
family of glycosylphosphatidylinositol-anchored beta(1-3)glucanosyltransferases. 
The active site residues in the Aspergillus 
fumigatus example are the two glutamate residues at 160 
and 261.
Length=315

 Score = 330 bits (848),  Expect = 9e-112, Method: Composition-based stats.
 Identities = 138/336 (41%), Positives = 188/336 (56%), Gaps = 34/336 (10%)

Query  19   SPVAVEAVRTISAVGSRFFY-EDGTQYFLKGIAYQLVPD---------DPLINTEQCTRD  68
            +  A  A   I   G++FF  ++G Q+++KG+ YQ  P          DPL + + C RD
Sbjct  2    TSAAFAATPPIEIKGNKFFDSKNGEQFYIKGVDYQ--PGGSSENSTLVDPLADADVCKRD  59

Query  69   VKLMAELGANAIRVYHVDPHANHDGCMKVLADAGIYLFVDLDTFDTQIEQTDPH--WNET  126
            +    ELG N IRVY VDP  NHD CMK L+DAGIY+ +DL+T    I + DP   +N  
Sbjct  60   IPYFKELGINTIRVYAVDPSLNHDECMKALSDAGIYVILDLNTPKESINRADPAGSYNVD  119

Query  127  QYDRFKQVLDEFQKYENTAGVFVGNEVLTTKEGSAAAPYVLAAARDIKAYRDAQNYRNIP  186
              +R+  V+D F+ Y N  G F GNEV      + A+PYV AA RD+K Y     YR IP
Sbjct  120  YLERYFAVIDAFKNYTNVLGFFAGNEVTNDASNTDASPYVKAAIRDMKQYISKHKYRTIP  179

Query  187  VGYSAADIAELRPMLQNFLACAENPSDRLDFFALNAYEWCGDSGYVQSGYRELQRNASGY  246
            VGYSAAD A+ R  L ++ AC  +  +R DFF +N YEWCG S +  SGY +  +    Y
Sbjct  180  VGYSAADDADTRVQLADYFACG-DDDERADFFGINMYEWCGYSSFKTSGYDDRTKEFENY  238

Query  247  PIPIFFSETGCNAARPRTFDDQAAIFGEHMSDTWSGSMVYEWIQEVNDYGLVSYGPPAPN  306
             IP+FFSE GCN   PR F + +A++   M+  +SG +VYE+ +E N+YGLVS       
Sbjct  239  SIPVFFSEYGCNKVTPRPFTEVSALYSSDMTSVFSGGLVYEYSEEANNYGLVS-------  291

Query  307  APPTDTLVYDGFTRKGVPTPVSPDFHNLKTQWATLS  342
                     DG     V      DF+NLK+++A +S
Sbjct  292  --------IDG---DDV-VTTLADFNNLKSEYAKIS  315



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00022968

Length=729


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 924021520


Query= TCONS_00022969

Length=729


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 924021520


Query= TCONS_00027419

Length=197


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00027420

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00027418

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00022970

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00022972

Length=557


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 694909020


Query= TCONS_00022971

Length=1180


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1512125754


Query= TCONS_00027421

Length=1180


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1512125754


Query= TCONS_00022975

Length=557


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 694909020


Query= TCONS_00022974

Length=557


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 694909020


Query= TCONS_00022973

Length=557


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 694909020


Query= TCONS_00022978

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  155     1e-47


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 155 bits (393),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 77/201 (38%), Positives = 113/201 (56%), Gaps = 36/201 (18%)

Query  38   TPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPIKKHHVGAIIISPTR  97
            TP+QA AIP  +  +DV+V+A TGSGKTL+FL+P +E L +L+   +     A++++PTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQ-----ALVLAPTR  55

Query  98   ELASQIYNVLSSLLAFHPPSAAAINPSEDDDAPRPKFPSSTLKVVPQLLLGGSTTPAEDL  157
            ELA QIY  L  L        A++                         LGG +   ++ 
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASL-------------------------LGGDSR--KEQ  88

Query  158  STFLKRSPNVLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKETLQNILRR  217
               LK  P++LV TPGRLL+LL    +     + ++LVLDEA RLLD+GF   L+ ILRR
Sbjct  89   LEKLKG-PDILVGTPGRLLDLLQERKLL---KNLKLLVLDEAHRLLDMGFGPDLEEILRR  144

Query  218  LPKQRRTGLFSASVSEAVDQI  238
            LPK+R+  L SA++   ++ +
Sbjct  145  LPKKRQILLLSATLPRNLEDL  165



Lambda      K        H        a         alpha
   0.318    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00022977

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396013 pfam01263, Aldose_epim, Aldose 1-epimerase                 166     2e-48


>CDD:396013 pfam01263, Aldose_epim, Aldose 1-epimerase.  
Length=300

 Score = 166 bits (423),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 102/359 (28%), Positives = 156/359 (43%), Gaps = 76/359 (21%)

Query  87   KVYTISAEN-ITAKLIPYGARLISLMVPDRDGKEQDVVIGYDDPKAYLNDTETVHTFFGA  145
             + T++  N ++A +  YGA L+SL VP +    ++V++G DD + YL D+     +FGA
Sbjct  1    DLITLTNGNGLSATISLYGATLLSLKVPGKL---REVLLGSDDAEGYLKDS----NYFGA  53

Query  146  VVGRYANRIKNGTFTIRSNEYHVPKNENNGIDTLHGGKVGYDQRNWTVTAHS---KSSVT  202
             +G YANRI NG F +    Y +P+N       LHGG  G   R W V         +VT
Sbjct  54   TLGPYANRIANGRFELDGIPYCLPQNGPGKN-PLHGGARG---RIWEVEEVKPDDGVTVT  109

Query  203  FTLYDQGWEDFPGDVITHAVYSVDTAVTPQNPKGLPQLTTKLISLALTEATPIMLSNHIY  262
              L   G E +PGD+     Y+++      N     +LT +  +    + TP  L NH Y
Sbjct  110  LVLDPDGEEGYPGDLEARVTYTLN----EDN-----ELTIEYEATNDGKPTPFNLGNHPY  160

Query  263  WNLNAFKAPNVLNDTFLQLPYSNRLIATDGILIPNGTILTVDAFNGAP-DFTEGKLIGAD  321
            +NL+       ++   LQ+  ++  +  D  LIP G +  V    G P DF +   IG D
Sbjct  161  FNLS-----GDIDIHELQI-EADEYLEVDDDLIPTGELKDV---KGTPFDFRQPTPIGED  211

Query  322  LKDTYGMCGTDCTGYDTCWLVDRPPQYAAPDSLVPIVRMNSSATGISLEVSSNMPALQIY  381
            +            GYD  +L+         D L  ++      +GI LEVS+  P L +Y
Sbjct  212  IL-----------GYDHVYLL---------DPLKAVIIDPDPGSGIVLEVSTTQPGLVVY  251

Query  382  TCDNAKMDYLPIKPSQEKRNKEEGKEGAKNVMQYGCVVIEPEGWIDGINHPEWGQLPLQ  440
            T +  K  YL  +                         +E +   D  NHPE+  + L+
Sbjct  252  TPNFLKGKYLSDEG----------------------FALETQFLPDEPNHPEFPSIILK  288



Lambda      K        H        a         alpha
   0.318    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00027422

Length=386


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00022979

Length=386


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00022980

Length=869
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:408180 pfam18380, GEN1_C, Holliday junction resolvase Gen1 C-...  112     5e-30
CDD:459970 pfam00867, XPG_I, XPG I-region                             109     3e-29


>CDD:408180 pfam18380, GEN1_C, Holliday junction resolvase Gen1 C-terminal 
domain.  This is the C-terminal domain found in GEN1 resolvase. 
It is composed of three-strand antiparallel beta sheets 
and four alpha helices. GEN1 protein, a member of the XPG/Rad2 
family of structure-selective endonucleases, is specialized 
for the cleavage of Holliday junction recombination intermediates. 
Structural comparison indicates that the C-terminal 
domain is similar to a series of chromobox homology proteins. 
Functional analysis indicates that the chromodomain provides 
an additional DNA binding site necessary for efficient 
HJ cleavage, and its truncation severely hampers GEN1's catalytic 
activity.
Length=104

 Score = 112 bits (282),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 64/108 (59%), Gaps = 4/108 (4%)

Query  358  MLQRIYKSRTSFSTDGLTELQLEIVPIDVVGLDLLAEEPNPPIPSQETTIVSGDEDEDAE  417
            ++++I+  RT  STDGL E ++E +P ++V +DL  EE   P PS    + + + D++ +
Sbjct  1    LVKKIHGRRTHASTDGLPEYRVEFIPAELVPIDLSGEEGTRPPPSGRDGL-ALNSDDEDD  59

Query  418  VYTEATGQPPTKNRTGKRFDPYAAEKVWIFETIATIGVPEVVRTWKKE  465
                ++   P K R  K +DP + E++WI E++  +G P +V  W+++
Sbjct  60   EAEPSS---PPKKRKKKPYDPTSPERIWIPESLVRLGAPLLVEDWEEK  104


>CDD:459970 pfam00867, XPG_I, XPG I-region.  
Length=87

 Score = 109 bits (276),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 32/92 (35%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query  100  KFPRHDAPGEAEAECARLQRAGVVDAVMSNDVDALMFGSTLTVMNFSKESGSGTSAATHI  159
              P   APGEAEA+CA LQ++G+VDAV+S D D L+FG+   + N + +S     +   +
Sbjct  1    GIPYVVAPGEAEAQCAYLQKSGLVDAVISEDSDVLLFGAPRLLRNLTGKSKK--KSKVPV  58

Query  160  TCYRMCGDGHHPSNVPLDRAGMILFAMLSGGD  191
                +         + L R  +I  A+L G D
Sbjct  59   EEIDLEKIL---KELGLTREQLIDLAILLGCD  87



Lambda      K        H        a         alpha
   0.313    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1111087836


Query= TCONS_00027423

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464056 pfam13959, DUF4217, Domain of unknown function (DUF421...  90.1    2e-23
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  76.1    1e-17


>CDD:464056 pfam13959, DUF4217, Domain of unknown function (DUF4217).  This 
short domain is found at the C-terminus of many helicase 
proteins.
Length=59

 Score = 90.1 bits (225),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 38/55 (69%), Gaps = 0/55 (0%)

Query  175  RKAVLADRALHDRGQKAFVSWLRSYSKHQASSIFRVSDLDWEALGKAWGLLKLPK  229
             K VL DR L +  QKAFVS++R+YSKH A SIF V  LD   L K++GLL+ PK
Sbjct  5    EKLVLKDRELKELAQKAFVSYVRAYSKHLAKSIFNVKKLDLGHLAKSFGLLRAPK  59


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 76.1 bits (188),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 35/110 (32%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query  11   KFAALKRIVSSVQPTPLKTIFFVSTCSGVDYLSAILPLLLGDDFLLIPLHGKHQANVRQK  70
            K  AL  ++   +    K + F  T   ++    +L    G       LHG      R++
Sbjct  2    KLEALLELLKKERGG--KVLIFSQTKKTLEA--ELLLEKEGIKVA--RLHGDLSQEEREE  55

Query  71   NFNRFINSHDPAILLTTDVAARGLDIPSVDLVVQIDPPSDPKSFIHRCGR  120
                F       +L+ TDVA RGLD+P VDLV+  D P +P S+I R GR
Sbjct  56   ILEDFRKGKID-VLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGR  104



Lambda      K        H        a         alpha
   0.315    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00022981

Length=640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  157     1e-45
CDD:464056 pfam13959, DUF4217, Domain of unknown function (DUF421...  92.5    1e-23
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  76.9    1e-17


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 157 bits (400),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 77/201 (38%), Positives = 113/201 (56%), Gaps = 36/201 (18%)

Query  38   TPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPIKKHHVGAIIISPTR  97
            TP+QA AIP  +  +DV+V+A TGSGKTL+FL+P +E L +L+   +     A++++PTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQ-----ALVLAPTR  55

Query  98   ELASQIYNVLSSLLAFHPPSAAAINPSEDDDAPRPKFPSSTLKVVPQLLLGGSTTPAEDL  157
            ELA QIY  L  L        A++                         LGG +   ++ 
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASL-------------------------LGGDSR--KEQ  88

Query  158  STFLKRSPNVLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKETLQNILRR  217
               LK  P++LV TPGRLL+LL    +     + ++LVLDEA RLLD+GF   L+ ILRR
Sbjct  89   LEKLKG-PDILVGTPGRLLDLLQERKLL---KNLKLLVLDEAHRLLDMGFGPDLEEILRR  144

Query  218  LPKQRRTGLFSASVSEAVDQI  238
            LPK+R+  L SA++   ++ +
Sbjct  145  LPKKRQILLLSATLPRNLEDL  165


>CDD:464056 pfam13959, DUF4217, Domain of unknown function (DUF4217).  This 
short domain is found at the C-terminus of many helicase 
proteins.
Length=59

 Score = 92.5 bits (231),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 38/55 (69%), Gaps = 0/55 (0%)

Query  444  RKAVLADRALHDRGQKAFVSWLRSYSKHQASSIFRVSDLDWEALGKAWGLLKLPK  498
             K VL DR L +  QKAFVS++R+YSKH A SIF V  LD   L K++GLL+ PK
Sbjct  5    EKLVLKDRELKELAQKAFVSYVRAYSKHLAKSIFNVKKLDLGHLAKSFGLLRAPK  59


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 76.9 bits (190),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 35/110 (32%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query  280  KFAALKRIVSSVQPTPLKTIFFVSTCSGVDYLSAILPLLLGDDFLLIPLHGKHQANVRQK  339
            K  AL  ++   +    K + F  T   ++    +L    G       LHG      R++
Sbjct  2    KLEALLELLKKERGG--KVLIFSQTKKTLEA--ELLLEKEGIKVA--RLHGDLSQEEREE  55

Query  340  NFNRFINSHDPAILLTTDVAARGLDIPSVDLVVQIDPPSDPKSFIHRCGR  389
                F       +L+ TDVA RGLD+P VDLV+  D P +P S+I R GR
Sbjct  56   ILEDFRKGKID-VLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGR  104



Lambda      K        H        a         alpha
   0.316    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 806710130


Query= TCONS_00022982

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  157     2e-45
CDD:464056 pfam13959, DUF4217, Domain of unknown function (DUF421...  92.1    2e-23
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  76.5    2e-17


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 157 bits (399),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 77/201 (38%), Positives = 113/201 (56%), Gaps = 36/201 (18%)

Query  38   TPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPIKKHHVGAIIISPTR  97
            TP+QA AIP  +  +DV+V+A TGSGKTL+FL+P +E L +L+   +     A++++PTR
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQ-----ALVLAPTR  55

Query  98   ELASQIYNVLSSLLAFHPPSAAAINPSEDDDAPRPKFPSSTLKVVPQLLLGGSTTPAEDL  157
            ELA QIY  L  L        A++                         LGG +   ++ 
Sbjct  56   ELAEQIYEELKKLGKGLGLKVASL-------------------------LGGDSR--KEQ  88

Query  158  STFLKRSPNVLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKETLQNILRR  217
               LK  P++LV TPGRLL+LL    +     + ++LVLDEA RLLD+GF   L+ ILRR
Sbjct  89   LEKLKG-PDILVGTPGRLLDLLQERKLL---KNLKLLVLDEAHRLLDMGFGPDLEEILRR  144

Query  218  LPKQRRTGLFSASVSEAVDQI  238
            LPK+R+  L SA++   ++ +
Sbjct  145  LPKKRQILLLSATLPRNLEDL  165


>CDD:464056 pfam13959, DUF4217, Domain of unknown function (DUF4217).  This 
short domain is found at the C-terminus of many helicase 
proteins.
Length=59

 Score = 92.1 bits (230),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 38/55 (69%), Gaps = 0/55 (0%)

Query  455  RKAVLADRALHDRGQKAFVSWLRSYSKHQASSIFRVSDLDWEALGKAWGLLKLPK  509
             K VL DR L +  QKAFVS++R+YSKH A SIF V  LD   L K++GLL+ PK
Sbjct  5    EKLVLKDRELKELAQKAFVSYVRAYSKHLAKSIFNVKKLDLGHLAKSFGLLRAPK  59


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 76.5 bits (189),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 35/110 (32%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query  291  KFAALKRIVSSVQPTPLKTIFFVSTCSGVDYLSAILPLLLGDDFLLIPLHGKHQANVRQK  350
            K  AL  ++   +    K + F  T   ++    +L    G       LHG      R++
Sbjct  2    KLEALLELLKKERGG--KVLIFSQTKKTLEA--ELLLEKEGIKVA--RLHGDLSQEEREE  55

Query  351  NFNRFINSHDPAILLTTDVAARGLDIPSVDLVVQIDPPSDPKSFIHRCGR  400
                F       +L+ TDVA RGLD+P VDLV+  D P +P S+I R GR
Sbjct  56   ILEDFRKGKID-VLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGR  104



Lambda      K        H        a         alpha
   0.316    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0772    0.140     1.90     42.6     43.6 

Effective search space used: 822932820


Query= TCONS_00027424

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464056 pfam13959, DUF4217, Domain of unknown function (DUF421...  90.9    2e-23
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  74.9    4e-17
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  63.8    1e-12


>CDD:464056 pfam13959, DUF4217, Domain of unknown function (DUF4217).  This 
short domain is found at the C-terminus of many helicase 
proteins.
Length=59

 Score = 90.9 bits (227),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 38/55 (69%), Gaps = 0/55 (0%)

Query  252  RKAVLADRALHDRGQKAFVSWLRSYSKHQASSIFRVSDLDWEALGKAWGLLKLPK  306
             K VL DR L +  QKAFVS++R+YSKH A SIF V  LD   L K++GLL+ PK
Sbjct  5    EKLVLKDRELKELAQKAFVSYVRAYSKHLAKSIFNVKKLDLGHLAKSFGLLRAPK  59


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 74.9 bits (185),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 35/110 (32%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query  88   KFAALKRIVSSVQPTPLKTIFFVSTCSGVDYLSAILPLLLGDDFLLIPLHGKHQANVRQK  147
            K  AL  ++   +    K + F  T   ++    +L    G       LHG      R++
Sbjct  2    KLEALLELLKKERGG--KVLIFSQTKKTLEA--ELLLEKEGIKVA--RLHGDLSQEEREE  55

Query  148  NFNRFINSHDPAILLTTDVAARGLDIPSVDLVVQIDPPSDPKSFIHRCGR  197
                F       +L+ TDVA RGLD+P VDLV+  D P +P S+I R GR
Sbjct  56   ILEDFRKGKID-VLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGR  104


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 63.8 bits (156),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 34/46 (74%), Gaps = 0/46 (0%)

Query  1    MLVLDEADRLLDLGFKETLQNILRRLPKQRRTGLFSASVSEAVDQI  46
            +LVLDEA RLLD+GF   L+ ILRRLPK+R+  L SA++   ++ +
Sbjct  120  LLVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLPRNLEDL  165



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00022983

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459759 pfam00318, Ribosomal_S2, Ribosomal protein S2              76.3    4e-17
CDD:465029 pfam16122, 40S_SA_C, 40S ribosomal protein SA C-termin...  56.1    8e-11


>CDD:459759 pfam00318, Ribosomal_S2, Ribosomal protein S2.  
Length=216

 Score = 76.3 bits (189),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 86/222 (39%), Gaps = 62/222 (28%)

Query  20   LLAAQCHLGSKNLQVH--------MEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAI-  70
            LL A  H G      H        M+PY++  R +G+++I++ KT   +  A +++  + 
Sbjct  1    LLEAGVHFG------HQTRRWNPKMKPYIFGER-NGIHIIDLEKTLPLLRRAYKVVREVA  53

Query  71   ENPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYIT---------------  115
                 I  +  +   Q A+ + A   G   +  R+  G  TN+ T               
Sbjct  54   AKGGKILFVGTKKQAQEAIKEAAKRCGMYYVNERWLGGMLTNFKTIRKSIKRLKELEEME  113

Query  116  -------RSFKE------------------------PRLIIVTDPRTDAQAIKEASYVNI  144
                    + KE                        P L+ V DP  +  A+KEA  + I
Sbjct  114  EDGTFEDLTKKEALTLKREREKLEKNLGGIKDMKRLPDLLFVLDPNKEKIAVKEARKLGI  173

Query  145  PVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWLLAREVLR  186
            PVI + DT+   + VD  IP N+    +I LI  +LA  ++ 
Sbjct  174  PVIGIVDTNCDPDLVDYPIPGNDDAIRSIKLILGVLADAIIE  215


>CDD:465029 pfam16122, 40S_SA_C, 40S ribosomal protein SA C-terminus.  This 
domain is found at the C-terminus of 40S ribosomal protein 
SA.
Length=98

 Score = 56.1 bits (135),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 32/98 (33%), Positives = 38/98 (39%), Gaps = 14/98 (14%)

Query  205  YFYRDPEAEENKEI-ADEAKVPGAEEIGA------GAVESGFAGENWDTQAPGAGVPGTA  257
            +FYRDPE  E +E  A EA V  AEE  A          +     +W    P       A
Sbjct  1    FFYRDPEEAEKEEQAAAEAAVVKAEEWTAPVTPEPAWANTAAEVADWADDGPAVP----A  56

Query  258  FSAATAAPTSWEADGGDWAASSAAPAGESWAETQPAEA  295
              A  AA  +      DW   SA PA E W+    A A
Sbjct  57   APAPQAAAGAQAQAAEDW---SAQPATEDWSAAPTAAA  91



Lambda      K        H        a         alpha
   0.316    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00022984

Length=652
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460204 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthas...  136     1e-38


>CDD:460204 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthase.  Involved 
in the formation of pseudouridine at the anticodon stem 
and loop of transfer-RNAs Pseudouridine is an isomer of uridine 
(5-(beta-D-ribofuranosyl) uracil, and id the most abundant 
modified nucleoside found in all cellular RNAs. The TruA-like 
proteins also exhibit a conserved sequence with a strictly 
conserved aspartic acid, likely involved in catalysis.
Length=108

 Score = 136 bits (344),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 48/144 (33%), Positives = 63/144 (44%), Gaps = 36/144 (25%)

Query  367  AARYFEGVHDFRNFCKLDTSKQIENFERIIYHADIELLDPKDHPLGYVNQPGFQALQDAP  426
            AA+ + G HDF NFCK D  K  +N  R I  A +  +  +D  L               
Sbjct  1    AAKLYVGTHDFGNFCKQDQPK--KNTVRTILEAAVSRVGGEDGDL---------------  43

Query  427  ARTSAESGTFTSPAAAKVYVFNLHGSAFLWHQVRHMVSILFLVGQGLEPPTIVRDLLDVS  486
                               VF + GS FL H VR MV +LFLVGQG EPP  + +LL+ +
Sbjct  44   ------------------IVFEVRGSGFLDHMVRAMVGVLFLVGQGKEPPEWIAELLN-A  84

Query  487  KNPCKPTYEMASDAPLVLWDCIFP  510
            K+P K     A    L L+   +P
Sbjct  85   KDPRKIAGPTAPPVGLYLFHVRYP  108



Lambda      K        H        a         alpha
   0.317    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00022986

Length=652
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460204 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthas...  136     1e-38


>CDD:460204 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthase.  Involved 
in the formation of pseudouridine at the anticodon stem 
and loop of transfer-RNAs Pseudouridine is an isomer of uridine 
(5-(beta-D-ribofuranosyl) uracil, and id the most abundant 
modified nucleoside found in all cellular RNAs. The TruA-like 
proteins also exhibit a conserved sequence with a strictly 
conserved aspartic acid, likely involved in catalysis.
Length=108

 Score = 136 bits (344),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 48/144 (33%), Positives = 63/144 (44%), Gaps = 36/144 (25%)

Query  367  AARYFEGVHDFRNFCKLDTSKQIENFERIIYHADIELLDPKDHPLGYVNQPGFQALQDAP  426
            AA+ + G HDF NFCK D  K  +N  R I  A +  +  +D  L               
Sbjct  1    AAKLYVGTHDFGNFCKQDQPK--KNTVRTILEAAVSRVGGEDGDL---------------  43

Query  427  ARTSAESGTFTSPAAAKVYVFNLHGSAFLWHQVRHMVSILFLVGQGLEPPTIVRDLLDVS  486
                               VF + GS FL H VR MV +LFLVGQG EPP  + +LL+ +
Sbjct  44   ------------------IVFEVRGSGFLDHMVRAMVGVLFLVGQGKEPPEWIAELLN-A  84

Query  487  KNPCKPTYEMASDAPLVLWDCIFP  510
            K+P K     A    L L+   +P
Sbjct  85   KDPRKIAGPTAPPVGLYLFHVRYP  108



Lambda      K        H        a         alpha
   0.317    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00022985

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose...  152     6e-46
CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-a...  114     1e-30


>CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose phosphate 
pyrophosphokinase.  This family is frequently found N-terminal 
to the Pribosyltran, pfam00156.
Length=117

 Score = 152 bits (388),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 51/94 (54%), Positives = 65/94 (69%), Gaps = 0/94 (0%)

Query  5   IVVIGGTSHPQLTQTICNVLGIPPADVLLSKFAVGETRVEIKESVREKDVYIIQSGGLKV  64
           + +  G S+P+L + I   LGIP     +S+F+ GE  V I+ESVR KDV+IIQS    V
Sbjct  1   LKIFSGNSNPELAEKIAKRLGIPLGKATVSRFSDGEIYVRIEESVRGKDVFIIQSTCPPV  60

Query  65  NDSLMELLITISACKTASAKRVTAVLPLFPYSRQ  98
           ND+LMELLI I A K ASAKR+TAV+P F Y+RQ
Sbjct  61  NDNLMELLIMIDALKRASAKRITAVIPYFGYARQ  94


>CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-associated 
domain.  This family includes several examples of enzymes 
from class EC:2.7.6.1, phosphoribosyl-pyrophosphate transferase.
Length=184

 Score = 114 bits (288),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 56/171 (33%), Positives = 93/171 (54%), Gaps = 26/171 (15%)

Query  277  NYKHAVIVSPDAGGAKRATAIADSMGMEFALIHKERR-------------PTK-------  316
            +Y++AVIV+   G AKRAT+ A+ + +  A+IH E++             P         
Sbjct  1    DYRNAVIVARSPGSAKRATSFAERLRLGIAVIHGEQKEAESDEVDGRQSPPPYRSRTVSR  60

Query  317  ------ITDRQNATMMLVGDVKDRTTILIDDLADTSNTITRAAKLLKKEGASQVYALVTH  370
                  I  ++   M +VGDV  R  I++DD+ D  ++   AA+LLK+ GA ++Y + TH
Sbjct  61   SLGLPEIIPKEKPPMTVVGDVGGRIAIIVDDMIDDVDSFVAAAELLKERGAYKIYVMATH  120

Query  371  GILSGDAIDRINASALDKVVVTNSVDQSDHLRRCPKLEVLEVGHVFAEVSR  421
            G+LS DA   + AS +D+VVVTN++       +C K++ +++  + AE  R
Sbjct  121  GLLSSDAPRLLEASPIDEVVVTNTIPHEIQKMQCHKIKTIDISQLIAEAIR  171



Lambda      K        H        a         alpha
   0.315    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00027425

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose...  152     8e-46
CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-a...  140     3e-40


>CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose phosphate 
pyrophosphokinase.  This family is frequently found N-terminal 
to the Pribosyltran, pfam00156.
Length=117

 Score = 152 bits (387),  Expect = 8e-46, Method: Composition-based stats.
 Identities = 51/94 (54%), Positives = 65/94 (69%), Gaps = 0/94 (0%)

Query  5   IVVIGGTSHPQLTQTICNVLGIPPADVLLSKFAVGETRVEIKESVREKDVYIIQSGGLKV  64
           + +  G S+P+L + I   LGIP     +S+F+ GE  V I+ESVR KDV+IIQS    V
Sbjct  1   LKIFSGNSNPELAEKIAKRLGIPLGKATVSRFSDGEIYVRIEESVRGKDVFIIQSTCPPV  60

Query  65  NDSLMELLITISACKTASAKRVTAVLPLFPYSRQ  98
           ND+LMELLI I A K ASAKR+TAV+P F Y+RQ
Sbjct  61  NDNLMELLIMIDALKRASAKRITAVIPYFGYARQ  94


>CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-associated 
domain.  This family includes several examples of enzymes 
from class EC:2.7.6.1, phosphoribosyl-pyrophosphate transferase.
Length=184

 Score = 140 bits (354),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 66/184 (36%), Positives = 107/184 (58%), Gaps = 26/184 (14%)

Query  277  NYKHAVIVSPDAGGAKRATAIADSMGMEFALIHKERR-------------PTK-------  316
            +Y++AVIV+   G AKRAT+ A+ + +  A+IH E++             P         
Sbjct  1    DYRNAVIVARSPGSAKRATSFAERLRLGIAVIHGEQKEAESDEVDGRQSPPPYRSRTVSR  60

Query  317  ------ITDRQNATMMLVGDVKDRTTILIDDLADTSNTITRAAKLLKKEGASQVYALVTH  370
                  I  ++   M +VGDV  R  I++DD+ D  ++   AA+LLK+ GA ++Y + TH
Sbjct  61   SLGLPEIIPKEKPPMTVVGDVGGRIAIIVDDMIDDVDSFVAAAELLKERGAYKIYVMATH  120

Query  371  GILSGDAIDRINASALDKVVVTNSVDQSDHLRRCPKLEVLEVGHVFAEAIRRVHHGESIS  430
            G+LS DA   + AS +D+VVVTN++       +C K++ +++  + AEAIRR+H+GES+S
Sbjct  121  GLLSSDAPRLLEASPIDEVVVTNTIPHEIQKMQCHKIKTIDISQLIAEAIRRIHNGESMS  180

Query  431  VLFQ  434
             LF+
Sbjct  181  YLFR  184



Lambda      K        H        a         alpha
   0.316    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00027426

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426553 pfam01992, vATP-synt_AC39, ATP synthase (C/AC39) subun...  195     2e-61


>CDD:426553 pfam01992, vATP-synt_AC39, ATP synthase (C/AC39) subunit.  This 
family includes the AC39 subunit from vacuolar ATP synthase, 
and the C subunit from archaebacterial ATP synthase. The 
family also includes subunit C from the Sodium transporting 
ATP synthase from Enterococcus hirae.
Length=333

 Score = 195 bits (499),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 82/274 (30%), Positives = 121/274 (44%), Gaps = 27/274 (10%)

Query  1    MTDKLVAEFRYLLAQATGSTAKFLQYLTYGYMIDNIALLITGTLHERDTRELLERCHPLG  60
            +  +L   F  L   A G + +FL    Y Y I N+ LL+ G L   D  ELLE   PLG
Sbjct  59   LRRELAKTFEKLRRFAPGLSREFLDLYLYRYDIHNLKLLLRGKLSGLDLEELLEFLIPLG  118

Query  61   WFETLPVLCV-----ATNIEELYNSVLIETPLADYFKGSLSHQDLDELNIEIVRNTLYKN  115
               TL  L +     A ++EEL  ++L  TP A+  + +L   + +  +++++ N L K 
Sbjct  119  ---TLSALDLDKLIEAKDVEELVEALL-GTPYAEALEEALDELE-ETGDLQLIENALDKA  173

Query  116  YLEDFHNFVNTHPDFKGTPTQEVMSELLQFEADRRAINITLNSFG-TELSKQERRKLYPE  174
            Y ED + F        G  T E++ E L FE D R I I L S    +LS ++  KL   
Sbjct  174  YYEDLYKFCKK----LGGKTAEILREYLGFEIDLRNIKIILRSKKYGKLSPEDIYKLLIP  229

Query  175  FGKLYPEGSLMLSRADDLEGVSLAVSVNADYKAFFDAVGLSQGGGGGFGMGGGSDGKSLE  234
             G L PE    L+ A+D+E V  A+     Y                          +LE
Sbjct  230  GGSLSPEELKALAEAEDVEEVLAALE-GTPYGELLSEA----------LEELTGSLSALE  278

Query  235  DLFYQKEMELCK-IVFTRQFTPAVVYAWMRLKEQ  267
                   +EL K +   + F+   V A+++LKEQ
Sbjct  279  RALDNYLLELAKKLARYQPFSIGPVLAYLKLKEQ  312



Lambda      K        H        a         alpha
   0.320    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00027427

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose...  152     8e-46
CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-a...  140     3e-40


>CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose phosphate 
pyrophosphokinase.  This family is frequently found N-terminal 
to the Pribosyltran, pfam00156.
Length=117

 Score = 152 bits (387),  Expect = 8e-46, Method: Composition-based stats.
 Identities = 51/94 (54%), Positives = 65/94 (69%), Gaps = 0/94 (0%)

Query  5   IVVIGGTSHPQLTQTICNVLGIPPADVLLSKFAVGETRVEIKESVREKDVYIIQSGGLKV  64
           + +  G S+P+L + I   LGIP     +S+F+ GE  V I+ESVR KDV+IIQS    V
Sbjct  1   LKIFSGNSNPELAEKIAKRLGIPLGKATVSRFSDGEIYVRIEESVRGKDVFIIQSTCPPV  60

Query  65  NDSLMELLITISACKTASAKRVTAVLPLFPYSRQ  98
           ND+LMELLI I A K ASAKR+TAV+P F Y+RQ
Sbjct  61  NDNLMELLIMIDALKRASAKRITAVIPYFGYARQ  94


>CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-associated 
domain.  This family includes several examples of enzymes 
from class EC:2.7.6.1, phosphoribosyl-pyrophosphate transferase.
Length=184

 Score = 140 bits (354),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 66/184 (36%), Positives = 107/184 (58%), Gaps = 26/184 (14%)

Query  277  NYKHAVIVSPDAGGAKRATAIADSMGMEFALIHKERR-------------PTK-------  316
            +Y++AVIV+   G AKRAT+ A+ + +  A+IH E++             P         
Sbjct  1    DYRNAVIVARSPGSAKRATSFAERLRLGIAVIHGEQKEAESDEVDGRQSPPPYRSRTVSR  60

Query  317  ------ITDRQNATMMLVGDVKDRTTILIDDLADTSNTITRAAKLLKKEGASQVYALVTH  370
                  I  ++   M +VGDV  R  I++DD+ D  ++   AA+LLK+ GA ++Y + TH
Sbjct  61   SLGLPEIIPKEKPPMTVVGDVGGRIAIIVDDMIDDVDSFVAAAELLKERGAYKIYVMATH  120

Query  371  GILSGDAIDRINASALDKVVVTNSVDQSDHLRRCPKLEVLEVGHVFAEAIRRVHHGESIS  430
            G+LS DA   + AS +D+VVVTN++       +C K++ +++  + AEAIRR+H+GES+S
Sbjct  121  GLLSSDAPRLLEASPIDEVVVTNTIPHEIQKMQCHKIKTIDISQLIAEAIRRIHNGESMS  180

Query  431  VLFQ  434
             LF+
Sbjct  181  YLFR  184



Lambda      K        H        a         alpha
   0.316    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00027428

Length=314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose...  154     1e-47


>CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose phosphate 
pyrophosphokinase.  This family is frequently found N-terminal 
to the Pribosyltran, pfam00156.
Length=117

 Score = 154 bits (391),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 51/94 (54%), Positives = 65/94 (69%), Gaps = 0/94 (0%)

Query  5   IVVIGGTSHPQLTQTICNVLGIPPADVLLSKFAVGETRVEIKESVREKDVYIIQSGGLKV  64
           + +  G S+P+L + I   LGIP     +S+F+ GE  V I+ESVR KDV+IIQS    V
Sbjct  1   LKIFSGNSNPELAEKIAKRLGIPLGKATVSRFSDGEIYVRIEESVRGKDVFIIQSTCPPV  60

Query  65  NDSLMELLITISACKTASAKRVTAVLPLFPYSRQ  98
           ND+LMELLI I A K ASAKR+TAV+P F Y+RQ
Sbjct  61  NDNLMELLIMIDALKRASAKRITAVIPYFGYARQ  94



Lambda      K        H        a         alpha
   0.315    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00022989

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426553 pfam01992, vATP-synt_AC39, ATP synthase (C/AC39) subun...  195     2e-61


>CDD:426553 pfam01992, vATP-synt_AC39, ATP synthase (C/AC39) subunit.  This 
family includes the AC39 subunit from vacuolar ATP synthase, 
and the C subunit from archaebacterial ATP synthase. The 
family also includes subunit C from the Sodium transporting 
ATP synthase from Enterococcus hirae.
Length=333

 Score = 195 bits (499),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 82/274 (30%), Positives = 121/274 (44%), Gaps = 27/274 (10%)

Query  1    MTDKLVAEFRYLLAQATGSTAKFLQYLTYGYMIDNIALLITGTLHERDTRELLERCHPLG  60
            +  +L   F  L   A G + +FL    Y Y I N+ LL+ G L   D  ELLE   PLG
Sbjct  59   LRRELAKTFEKLRRFAPGLSREFLDLYLYRYDIHNLKLLLRGKLSGLDLEELLEFLIPLG  118

Query  61   WFETLPVLCV-----ATNIEELYNSVLIETPLADYFKGSLSHQDLDELNIEIVRNTLYKN  115
               TL  L +     A ++EEL  ++L  TP A+  + +L   + +  +++++ N L K 
Sbjct  119  ---TLSALDLDKLIEAKDVEELVEALL-GTPYAEALEEALDELE-ETGDLQLIENALDKA  173

Query  116  YLEDFHNFVNTHPDFKGTPTQEVMSELLQFEADRRAINITLNSFG-TELSKQERRKLYPE  174
            Y ED + F        G  T E++ E L FE D R I I L S    +LS ++  KL   
Sbjct  174  YYEDLYKFCKK----LGGKTAEILREYLGFEIDLRNIKIILRSKKYGKLSPEDIYKLLIP  229

Query  175  FGKLYPEGSLMLSRADDLEGVSLAVSVNADYKAFFDAVGLSQGGGGGFGMGGGSDGKSLE  234
             G L PE    L+ A+D+E V  A+     Y                          +LE
Sbjct  230  GGSLSPEELKALAEAEDVEEVLAALE-GTPYGELLSEA----------LEELTGSLSALE  278

Query  235  DLFYQKEMELCK-IVFTRQFTPAVVYAWMRLKEQ  267
                   +EL K +   + F+   V A+++LKEQ
Sbjct  279  RALDNYLLELAKKLARYQPFSIGPVLAYLKLKEQ  312



Lambda      K        H        a         alpha
   0.320    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00027429

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin. Th...  328     2e-110
CDD:462382 pfam08156, NOP5NT, NOP5NT (NUC127) domain. This N term...  58.2    2e-11 


>CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin.  This family 
consists of various Pre RNA processing ribonucleoproteins. 
The function of the aligned region is unknown however it 
may be a common RNA or snoRNA or Nop1p binding domain. Nop5p 
(Nop58p) from yeast is the protein component of a ribonucleoprotein 
required for pre-18s rRNA processing and is suggested 
to function with Nop1p in a snoRNA complex. Nop56p and Nop5p 
interact with Nop1p and are required for ribosome biogenesis. 
Prp31p is required for pre-mRNA splicing in S. cerevisiae. 
Fibrillarin, or Nop, is the catalytic subunit responsible 
for the methyl transfer reaction of the site-specific 2'-O-methylation 
of ribosomal and spliceosomal RNA.
Length=229

 Score = 328 bits (843),  Expect = 2e-110, Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 157/235 (67%), Gaps = 9/235 (4%)

Query  172  LDDLDKELNTYAMRVKEWYGWHFPELAKILNDNIAYAKLVLKMG-MRSNWETADLTEILP  230
            LDD+DKE+N   MR++EWY WHFPEL  ++ D + YAK+V  +G  R +    D    L 
Sbjct  1    LDDIDKEINLVHMRIREWYSWHFPELESLVPDPLDYAKVVKLIGNDREDLTKIDPDLELA  60

Query  231  EELEATVKAAADRSMGTEISQEDLENIQALAEQVVGFAEYRQQLAGYLTARMNAIAPNLT  290
            + +       A  SMGTE+S+EDLENI    ++V+   EYR++L  YL +RM+AIAPNLT
Sbjct  61   KAIIMAASVTASTSMGTELSEEDLENILEACDRVLELDEYRKKLLEYLESRMSAIAPNLT  120

Query  291  ALVGELVGARLIAHAGSLTNLSKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLI  350
            ALVG LV ARLI+HAG LTNL+K PAS IQILGAEKALFRALKT  +TPKYGLIYH+ L+
Sbjct  121  ALVGPLVAARLISHAGGLTNLAKMPASNIQILGAEKALFRALKTGFNTPKYGLIYHSPLV  180

Query  351  GQATGKNKGKMARVLAAKASLGLRVDALAEWDDDATEEDKAALGTEARYNLERKL  405
                 K +GK AR+LAAK +L  RVDA +E D           G + R  +E++L
Sbjct  181  QATPPKLRGKAARLLAAKCALAARVDAFSEPDGS--------YGEKLREEIEKRL  227


>CDD:462382 pfam08156, NOP5NT, NOP5NT (NUC127) domain.  This N terminal domain 
is found in RNA-binding proteins of the NOP5 family.
Length=66

 Score = 58.2 bits (142),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/66 (38%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query  4   FILTETSAGYA--LLKAKDKKLLKRDDLATEASTAEGVSNLVKLKSFQKFDSAATALEEV  61
            +L ET+AGYA   +K +++   K  ++       E  S +VKLK+F  F SAA ALE  
Sbjct  1   LVLFETAAGYALFKVKDEEEIGKKLKEVQESFQDLEKFSKMVKLKAFSPFKSAAEALENA  60

Query  62  ASLVEG  67
            ++ EG
Sbjct  61  NAISEG  66



Lambda      K        H        a         alpha
   0.309    0.127    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 745719572


Query= TCONS_00027430

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin. Th...  327     6e-111


>CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin.  This family 
consists of various Pre RNA processing ribonucleoproteins. 
The function of the aligned region is unknown however it 
may be a common RNA or snoRNA or Nop1p binding domain. Nop5p 
(Nop58p) from yeast is the protein component of a ribonucleoprotein 
required for pre-18s rRNA processing and is suggested 
to function with Nop1p in a snoRNA complex. Nop56p and Nop5p 
interact with Nop1p and are required for ribosome biogenesis. 
Prp31p is required for pre-mRNA splicing in S. cerevisiae. 
Fibrillarin, or Nop, is the catalytic subunit responsible 
for the methyl transfer reaction of the site-specific 2'-O-methylation 
of ribosomal and spliceosomal RNA.
Length=229

 Score = 327 bits (842),  Expect = 6e-111, Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 157/235 (67%), Gaps = 9/235 (4%)

Query  128  LDDLDKELNTYAMRVKEWYGWHFPELAKILNDNIAYAKLVLKMG-MRSNWETADLTEILP  186
            LDD+DKE+N   MR++EWY WHFPEL  ++ D + YAK+V  +G  R +    D    L 
Sbjct  1    LDDIDKEINLVHMRIREWYSWHFPELESLVPDPLDYAKVVKLIGNDREDLTKIDPDLELA  60

Query  187  EELEATVKAAADRSMGTEISQEDLENIQALAEQVVGFAEYRQQLAGYLTARMNAIAPNLT  246
            + +       A  SMGTE+S+EDLENI    ++V+   EYR++L  YL +RM+AIAPNLT
Sbjct  61   KAIIMAASVTASTSMGTELSEEDLENILEACDRVLELDEYRKKLLEYLESRMSAIAPNLT  120

Query  247  ALVGELVGARLIAHAGSLTNLSKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLI  306
            ALVG LV ARLI+HAG LTNL+K PAS IQILGAEKALFRALKT  +TPKYGLIYH+ L+
Sbjct  121  ALVGPLVAARLISHAGGLTNLAKMPASNIQILGAEKALFRALKTGFNTPKYGLIYHSPLV  180

Query  307  GQATGKNKGKMARVLAAKASLGLRVDALAEWDDDATEEDKAALGTEARYNLERKL  361
                 K +GK AR+LAAK +L  RVDA +E D           G + R  +E++L
Sbjct  181  QATPPKLRGKAARLLAAKCALAARVDAFSEPDGS--------YGEKLREEIEKRL  227



Lambda      K        H        a         alpha
   0.309    0.127    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690414096


Query= TCONS_00022990

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin. Th...  328     2e-110
CDD:462382 pfam08156, NOP5NT, NOP5NT (NUC127) domain. This N term...  58.2    2e-11 


>CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin.  This family 
consists of various Pre RNA processing ribonucleoproteins. 
The function of the aligned region is unknown however it 
may be a common RNA or snoRNA or Nop1p binding domain. Nop5p 
(Nop58p) from yeast is the protein component of a ribonucleoprotein 
required for pre-18s rRNA processing and is suggested 
to function with Nop1p in a snoRNA complex. Nop56p and Nop5p 
interact with Nop1p and are required for ribosome biogenesis. 
Prp31p is required for pre-mRNA splicing in S. cerevisiae. 
Fibrillarin, or Nop, is the catalytic subunit responsible 
for the methyl transfer reaction of the site-specific 2'-O-methylation 
of ribosomal and spliceosomal RNA.
Length=229

 Score = 328 bits (843),  Expect = 2e-110, Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 157/235 (67%), Gaps = 9/235 (4%)

Query  172  LDDLDKELNTYAMRVKEWYGWHFPELAKILNDNIAYAKLVLKMG-MRSNWETADLTEILP  230
            LDD+DKE+N   MR++EWY WHFPEL  ++ D + YAK+V  +G  R +    D    L 
Sbjct  1    LDDIDKEINLVHMRIREWYSWHFPELESLVPDPLDYAKVVKLIGNDREDLTKIDPDLELA  60

Query  231  EELEATVKAAADRSMGTEISQEDLENIQALAEQVVGFAEYRQQLAGYLTARMNAIAPNLT  290
            + +       A  SMGTE+S+EDLENI    ++V+   EYR++L  YL +RM+AIAPNLT
Sbjct  61   KAIIMAASVTASTSMGTELSEEDLENILEACDRVLELDEYRKKLLEYLESRMSAIAPNLT  120

Query  291  ALVGELVGARLIAHAGSLTNLSKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLI  350
            ALVG LV ARLI+HAG LTNL+K PAS IQILGAEKALFRALKT  +TPKYGLIYH+ L+
Sbjct  121  ALVGPLVAARLISHAGGLTNLAKMPASNIQILGAEKALFRALKTGFNTPKYGLIYHSPLV  180

Query  351  GQATGKNKGKMARVLAAKASLGLRVDALAEWDDDATEEDKAALGTEARYNLERKL  405
                 K +GK AR+LAAK +L  RVDA +E D           G + R  +E++L
Sbjct  181  QATPPKLRGKAARLLAAKCALAARVDAFSEPDGS--------YGEKLREEIEKRL  227


>CDD:462382 pfam08156, NOP5NT, NOP5NT (NUC127) domain.  This N terminal domain 
is found in RNA-binding proteins of the NOP5 family.
Length=66

 Score = 58.2 bits (142),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/66 (38%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query  4   FILTETSAGYA--LLKAKDKKLLKRDDLATEASTAEGVSNLVKLKSFQKFDSAATALEEV  61
            +L ET+AGYA   +K +++   K  ++       E  S +VKLK+F  F SAA ALE  
Sbjct  1   LVLFETAAGYALFKVKDEEEIGKKLKEVQESFQDLEKFSKMVKLKAFSPFKSAAEALENA  60

Query  62  ASLVEG  67
            ++ EG
Sbjct  61  NAISEG  66



Lambda      K        H        a         alpha
   0.309    0.127    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 745719572


Query= TCONS_00022991

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin. Th...  216     2e-71


>CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin.  This family 
consists of various Pre RNA processing ribonucleoproteins. 
The function of the aligned region is unknown however it 
may be a common RNA or snoRNA or Nop1p binding domain. Nop5p 
(Nop58p) from yeast is the protein component of a ribonucleoprotein 
required for pre-18s rRNA processing and is suggested 
to function with Nop1p in a snoRNA complex. Nop56p and Nop5p 
interact with Nop1p and are required for ribosome biogenesis. 
Prp31p is required for pre-mRNA splicing in S. cerevisiae. 
Fibrillarin, or Nop, is the catalytic subunit responsible 
for the methyl transfer reaction of the site-specific 2'-O-methylation 
of ribosomal and spliceosomal RNA.
Length=229

 Score = 216 bits (553),  Expect = 2e-71, Method: Composition-based stats.
 Identities = 75/145 (52%), Positives = 98/145 (68%), Gaps = 1/145 (1%)

Query  116  LDDLDKELNTYAMRVKEWYGWHFPELAKILNDNIAYAKLVLKMG-MRSNWETADLTEILP  174
            LDD+DKE+N   MR++EWY WHFPEL  ++ D + YAK+V  +G  R +    D    L 
Sbjct  1    LDDIDKEINLVHMRIREWYSWHFPELESLVPDPLDYAKVVKLIGNDREDLTKIDPDLELA  60

Query  175  EELEATVKAAADRSMGTEISQEDLENIQALAEQVVGFAEYRQQLAGYLTARMNAIAPNLT  234
            + +       A  SMGTE+S+EDLENI    ++V+   EYR++L  YL +RM+AIAPNLT
Sbjct  61   KAIIMAASVTASTSMGTELSEEDLENILEACDRVLELDEYRKKLLEYLESRMSAIAPNLT  120

Query  235  ALVGELVGARLIAHAGSLTNLSKSP  259
            ALVG LV ARLI+HAG LTNL+K P
Sbjct  121  ALVGPLVAARLISHAGGLTNLAKMP  145



Lambda      K        H        a         alpha
   0.320    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00022992

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin. Th...  330     7e-112


>CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin.  This family 
consists of various Pre RNA processing ribonucleoproteins. 
The function of the aligned region is unknown however it 
may be a common RNA or snoRNA or Nop1p binding domain. Nop5p 
(Nop58p) from yeast is the protein component of a ribonucleoprotein 
required for pre-18s rRNA processing and is suggested 
to function with Nop1p in a snoRNA complex. Nop56p and Nop5p 
interact with Nop1p and are required for ribosome biogenesis. 
Prp31p is required for pre-mRNA splicing in S. cerevisiae. 
Fibrillarin, or Nop, is the catalytic subunit responsible 
for the methyl transfer reaction of the site-specific 2'-O-methylation 
of ribosomal and spliceosomal RNA.
Length=229

 Score = 330 bits (848),  Expect = 7e-112, Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 157/235 (67%), Gaps = 9/235 (4%)

Query  116  LDDLDKELNTYAMRVKEWYGWHFPELAKILNDNIAYAKLVLKMG-MRSNWETADLTEILP  174
            LDD+DKE+N   MR++EWY WHFPEL  ++ D + YAK+V  +G  R +    D    L 
Sbjct  1    LDDIDKEINLVHMRIREWYSWHFPELESLVPDPLDYAKVVKLIGNDREDLTKIDPDLELA  60

Query  175  EELEATVKAAADRSMGTEISQEDLENIQALAEQVVGFAEYRQQLAGYLTARMNAIAPNLT  234
            + +       A  SMGTE+S+EDLENI    ++V+   EYR++L  YL +RM+AIAPNLT
Sbjct  61   KAIIMAASVTASTSMGTELSEEDLENILEACDRVLELDEYRKKLLEYLESRMSAIAPNLT  120

Query  235  ALVGELVGARLIAHAGSLTNLSKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLI  294
            ALVG LV ARLI+HAG LTNL+K PAS IQILGAEKALFRALKT  +TPKYGLIYH+ L+
Sbjct  121  ALVGPLVAARLISHAGGLTNLAKMPASNIQILGAEKALFRALKTGFNTPKYGLIYHSPLV  180

Query  295  GQATGKNKGKMARVLAAKASLGLRVDALAEWDDDATEEDKAALGTEARYNLERKL  349
                 K +GK AR+LAAK +L  RVDA +E D           G + R  +E++L
Sbjct  181  QATPPKLRGKAARLLAAKCALAARVDAFSEPDGS--------YGEKLREEIEKRL  227



Lambda      K        H        a         alpha
   0.311    0.129    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00022993

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin. Th...  328     2e-110
CDD:462382 pfam08156, NOP5NT, NOP5NT (NUC127) domain. This N term...  58.2    2e-11 


>CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin.  This family 
consists of various Pre RNA processing ribonucleoproteins. 
The function of the aligned region is unknown however it 
may be a common RNA or snoRNA or Nop1p binding domain. Nop5p 
(Nop58p) from yeast is the protein component of a ribonucleoprotein 
required for pre-18s rRNA processing and is suggested 
to function with Nop1p in a snoRNA complex. Nop56p and Nop5p 
interact with Nop1p and are required for ribosome biogenesis. 
Prp31p is required for pre-mRNA splicing in S. cerevisiae. 
Fibrillarin, or Nop, is the catalytic subunit responsible 
for the methyl transfer reaction of the site-specific 2'-O-methylation 
of ribosomal and spliceosomal RNA.
Length=229

 Score = 328 bits (843),  Expect = 2e-110, Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 157/235 (67%), Gaps = 9/235 (4%)

Query  172  LDDLDKELNTYAMRVKEWYGWHFPELAKILNDNIAYAKLVLKMG-MRSNWETADLTEILP  230
            LDD+DKE+N   MR++EWY WHFPEL  ++ D + YAK+V  +G  R +    D    L 
Sbjct  1    LDDIDKEINLVHMRIREWYSWHFPELESLVPDPLDYAKVVKLIGNDREDLTKIDPDLELA  60

Query  231  EELEATVKAAADRSMGTEISQEDLENIQALAEQVVGFAEYRQQLAGYLTARMNAIAPNLT  290
            + +       A  SMGTE+S+EDLENI    ++V+   EYR++L  YL +RM+AIAPNLT
Sbjct  61   KAIIMAASVTASTSMGTELSEEDLENILEACDRVLELDEYRKKLLEYLESRMSAIAPNLT  120

Query  291  ALVGELVGARLIAHAGSLTNLSKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLI  350
            ALVG LV ARLI+HAG LTNL+K PAS IQILGAEKALFRALKT  +TPKYGLIYH+ L+
Sbjct  121  ALVGPLVAARLISHAGGLTNLAKMPASNIQILGAEKALFRALKTGFNTPKYGLIYHSPLV  180

Query  351  GQATGKNKGKMARVLAAKASLGLRVDALAEWDDDATEEDKAALGTEARYNLERKL  405
                 K +GK AR+LAAK +L  RVDA +E D           G + R  +E++L
Sbjct  181  QATPPKLRGKAARLLAAKCALAARVDAFSEPDGS--------YGEKLREEIEKRL  227


>CDD:462382 pfam08156, NOP5NT, NOP5NT (NUC127) domain.  This N terminal domain 
is found in RNA-binding proteins of the NOP5 family.
Length=66

 Score = 58.2 bits (142),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 25/66 (38%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query  4   FILTETSAGYA--LLKAKDKKLLKRDDLATEASTAEGVSNLVKLKSFQKFDSAATALEEV  61
            +L ET+AGYA   +K +++   K  ++       E  S +VKLK+F  F SAA ALE  
Sbjct  1   LVLFETAAGYALFKVKDEEEIGKKLKEVQESFQDLEKFSKMVKLKAFSPFKSAAEALENA  60

Query  62  ASLVEG  67
            ++ EG
Sbjct  61  NAISEG  66



Lambda      K        H        a         alpha
   0.309    0.127    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 745719572


Query= TCONS_00027431

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin. Th...  328     5e-112


>CDD:460335 pfam01798, Nop, snoRNA binding domain, fibrillarin.  This family 
consists of various Pre RNA processing ribonucleoproteins. 
The function of the aligned region is unknown however it 
may be a common RNA or snoRNA or Nop1p binding domain. Nop5p 
(Nop58p) from yeast is the protein component of a ribonucleoprotein 
required for pre-18s rRNA processing and is suggested 
to function with Nop1p in a snoRNA complex. Nop56p and Nop5p 
interact with Nop1p and are required for ribosome biogenesis. 
Prp31p is required for pre-mRNA splicing in S. cerevisiae. 
Fibrillarin, or Nop, is the catalytic subunit responsible 
for the methyl transfer reaction of the site-specific 2'-O-methylation 
of ribosomal and spliceosomal RNA.
Length=229

 Score = 328 bits (844),  Expect = 5e-112, Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 157/235 (67%), Gaps = 9/235 (4%)

Query  68   LDDLDKELNTYAMRVKEWYGWHFPELAKILNDNIAYAKLVLKMG-MRSNWETADLTEILP  126
            LDD+DKE+N   MR++EWY WHFPEL  ++ D + YAK+V  +G  R +    D    L 
Sbjct  1    LDDIDKEINLVHMRIREWYSWHFPELESLVPDPLDYAKVVKLIGNDREDLTKIDPDLELA  60

Query  127  EELEATVKAAADRSMGTEISQEDLENIQALAEQVVGFAEYRQQLAGYLTARMNAIAPNLT  186
            + +       A  SMGTE+S+EDLENI    ++V+   EYR++L  YL +RM+AIAPNLT
Sbjct  61   KAIIMAASVTASTSMGTELSEEDLENILEACDRVLELDEYRKKLLEYLESRMSAIAPNLT  120

Query  187  ALVGELVGARLIAHAGSLTNLSKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLI  246
            ALVG LV ARLI+HAG LTNL+K PAS IQILGAEKALFRALKT  +TPKYGLIYH+ L+
Sbjct  121  ALVGPLVAARLISHAGGLTNLAKMPASNIQILGAEKALFRALKTGFNTPKYGLIYHSPLV  180

Query  247  GQATGKNKGKMARVLAAKASLGLRVDALAEWDDDATEEDKAALGTEARYNLERKL  301
                 K +GK AR+LAAK +L  RVDA +E D           G + R  +E++L
Sbjct  181  QATPPKLRGKAARLLAAKCALAARVDAFSEPDGS--------YGEKLREEIEKRL  227



Lambda      K        H        a         alpha
   0.308    0.127    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00027432

Length=553


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00022994

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00022999

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426078 pfam01145, Band_7, SPFH domain / Band 7 family. This f...  67.7    8e-16


>CDD:426078 pfam01145, Band_7, SPFH domain / Band 7 family.  This family 
has been called SPFH, Band 7 or PHB domain. Recent phylogenetic 
analysis has shown this domain to be a slipin or Stomatin-like 
integral membrane domain conserved from protozoa to mammals.
Length=177

 Score = 67.7 bits (166),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 28/124 (23%), Positives = 64/124 (52%), Gaps = 5/124 (4%)

Query  1    MTKDNVTLNLTSVIYYQIISP-----HKAAFGISNIRQALIERTQTTLRHVIGARVLQDV  55
            +TKD V +N+   + Y++         +  FG  ++++ L    ++ LR +I    L+++
Sbjct  53   LTKDGVPVNVDVTVIYRVNPDDPPKLVQNVFGSDDLQELLRRVLESALREIIARYTLEEL  112

Query  56   IERREEIAQSTSEIIEEVAAGWGVLVESMLIKDIIFSNDLQDSLSMAAQSKRIGESKVIA  115
            +  REE+A+     ++E  A +GV +  + I DI    ++ +++     +++  E+++  
Sbjct  113  LSNREELAEEIKNALQEELAKYGVEIIDVQITDIDPPPEIAEAIEAKQTAEQEAEAEIAR  172

Query  116  ARAE  119
            A AE
Sbjct  173  AEAE  176



Lambda      K        H        a         alpha
   0.317    0.130    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00027433

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426078 pfam01145, Band_7, SPFH domain / Band 7 family. This f...  67.7    8e-16


>CDD:426078 pfam01145, Band_7, SPFH domain / Band 7 family.  This family 
has been called SPFH, Band 7 or PHB domain. Recent phylogenetic 
analysis has shown this domain to be a slipin or Stomatin-like 
integral membrane domain conserved from protozoa to mammals.
Length=177

 Score = 67.7 bits (166),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 28/124 (23%), Positives = 64/124 (52%), Gaps = 5/124 (4%)

Query  1    MTKDNVTLNLTSVIYYQIISP-----HKAAFGISNIRQALIERTQTTLRHVIGARVLQDV  55
            +TKD V +N+   + Y++         +  FG  ++++ L    ++ LR +I    L+++
Sbjct  53   LTKDGVPVNVDVTVIYRVNPDDPPKLVQNVFGSDDLQELLRRVLESALREIIARYTLEEL  112

Query  56   IERREEIAQSTSEIIEEVAAGWGVLVESMLIKDIIFSNDLQDSLSMAAQSKRIGESKVIA  115
            +  REE+A+     ++E  A +GV +  + I DI    ++ +++     +++  E+++  
Sbjct  113  LSNREELAEEIKNALQEELAKYGVEIIDVQITDIDPPPEIAEAIEAKQTAEQEAEAEIAR  172

Query  116  ARAE  119
            A AE
Sbjct  173  AEAE  176



Lambda      K        H        a         alpha
   0.317    0.130    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00022996

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  75.0    2e-17


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 75.0 bits (185),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 88/207 (43%), Gaps = 30/207 (14%)

Query  3    NNILIVGASRGLGASL-RHLYASQASTTCVFATCRSSAPPEDSAESRVSWIPNI------  55
               L+ GAS G+G ++ + L    A    V    RS    E  A+     +  +      
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGA---KVVLVDRSEEKLEAVAKE----LGALGGKALF  53

Query  56   ---DVSQPNVGETLVSQLPSST-KLSCVIITAG---YFGFETFDDPDWEKEVRMYTTSAI  108
               DV+     + LV Q      +L  ++  AG      F    D DWE   R+   +  
Sbjct  54   IQGDVTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWE---RVIDVNLT  110

Query  109  GPVFVVQRLVKAGLLDKGSKVILVSSESGSITLRHEKEGGGNYGHHASKAALNMVGKLLS  168
            G   + + ++ A +   G +++ +SS +G +       GG  Y   ASKAA+    + L+
Sbjct  111  GVFNLTRAVLPAMIKGSGGRIVNISSVAGLVPY----PGGSAYS--ASKAAVIGFTRSLA  164

Query  169  LDLKENGIAVGLVHPGFMRTEMTKSVG  195
            L+L  +GI V  V PG + T+MTK + 
Sbjct  165  LELAPHGIRVNAVAPGGVDTDMTKELR  191



Lambda      K        H        a         alpha
   0.315    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00027434

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  75.0    2e-17


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 75.0 bits (185),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 88/207 (43%), Gaps = 30/207 (14%)

Query  3    NNILIVGASRGLGASL-RHLYASQASTTCVFATCRSSAPPEDSAESRVSWIPNI------  55
               L+ GAS G+G ++ + L    A    V    RS    E  A+     +  +      
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGA---KVVLVDRSEEKLEAVAKE----LGALGGKALF  53

Query  56   ---DVSQPNVGETLVSQLPSST-KLSCVIITAG---YFGFETFDDPDWEKEVRMYTTSAI  108
               DV+     + LV Q      +L  ++  AG      F    D DWE   R+   +  
Sbjct  54   IQGDVTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWE---RVIDVNLT  110

Query  109  GPVFVVQRLVKAGLLDKGSKVILVSSESGSITLRHEKEGGGNYGHHASKAALNMVGKLLS  168
            G   + + ++ A +   G +++ +SS +G +       GG  Y   ASKAA+    + L+
Sbjct  111  GVFNLTRAVLPAMIKGSGGRIVNISSVAGLVPY----PGGSAYS--ASKAAVIGFTRSLA  164

Query  169  LDLKENGIAVGLVHPGFMRTEMTKSVG  195
            L+L  +GI V  V PG + T+MTK + 
Sbjct  165  LELAPHGIRVNAVAPGGVDTDMTKELR  191



Lambda      K        H        a         alpha
   0.315    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00022997

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  74.6    2e-17


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 74.6 bits (184),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 88/207 (43%), Gaps = 30/207 (14%)

Query  3    NNILIVGASRGLGASL-RHLYASQASTTCVFATCRSSAPPEDSAESRVSWIPNI------  55
               L+ GAS G+G ++ + L    A    V    RS    E  A+     +  +      
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGA---KVVLVDRSEEKLEAVAKE----LGALGGKALF  53

Query  56   ---DVSQPNVGETLVSQLPSST-KLSCVIITAG---YFGFETFDDPDWEKEVRMYTTSAI  108
               DV+     + LV Q      +L  ++  AG      F    D DWE   R+   +  
Sbjct  54   IQGDVTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWE---RVIDVNLT  110

Query  109  GPVFVVQRLVKAGLLDKGSKVILVSSESGSITLRHEKEGGGNYGHHASKAALNMVGKLLS  168
            G   + + ++ A +   G +++ +SS +G +       GG  Y   ASKAA+    + L+
Sbjct  111  GVFNLTRAVLPAMIKGSGGRIVNISSVAGLVPY----PGGSAYS--ASKAAVIGFTRSLA  164

Query  169  LDLKENGIAVGLVHPGFMRTEMTKSVG  195
            L+L  +GI V  V PG + T+MTK + 
Sbjct  165  LELAPHGIRVNAVAPGGVDTDMTKELR  191



Lambda      K        H        a         alpha
   0.315    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00022998

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  75.0    2e-17


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 75.0 bits (185),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 88/207 (43%), Gaps = 30/207 (14%)

Query  3    NNILIVGASRGLGASL-RHLYASQASTTCVFATCRSSAPPEDSAESRVSWIPNI------  55
               L+ GAS G+G ++ + L    A    V    RS    E  A+     +  +      
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGA---KVVLVDRSEEKLEAVAKE----LGALGGKALF  53

Query  56   ---DVSQPNVGETLVSQLPSST-KLSCVIITAG---YFGFETFDDPDWEKEVRMYTTSAI  108
               DV+     + LV Q      +L  ++  AG      F    D DWE   R+   +  
Sbjct  54   IQGDVTDRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWE---RVIDVNLT  110

Query  109  GPVFVVQRLVKAGLLDKGSKVILVSSESGSITLRHEKEGGGNYGHHASKAALNMVGKLLS  168
            G   + + ++ A +   G +++ +SS +G +       GG  Y   ASKAA+    + L+
Sbjct  111  GVFNLTRAVLPAMIKGSGGRIVNISSVAGLVPY----PGGSAYS--ASKAAVIGFTRSLA  164

Query  169  LDLKENGIAVGLVHPGFMRTEMTKSVG  195
            L+L  +GI V  V PG + T+MTK + 
Sbjct  165  LELAPHGIRVNAVAPGGVDTDMTKELR  191



Lambda      K        H        a         alpha
   0.315    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0736    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00027435

Length=249


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00023000

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426404 pfam01740, STAS, STAS domain. The STAS (after Sulphate...  56.1    5e-11


>CDD:426404 pfam01740, STAS, STAS domain.  The STAS (after Sulphate Transporter 
and AntiSigma factor antagonist) domain is found in the 
C terminal region of Sulphate transporters and bacterial 
antisigma factor antagonists. It has been suggested that this 
domain may have a general NTP binding function.
Length=106

 Score = 56.1 bits (136),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 32/124 (26%), Positives = 54/124 (44%), Gaps = 20/124 (16%)

Query  89   NVQLIEGALIVKIPEPLTFANTGDLKNRLRRLELYGSSRVHPSFPRMRSPENNKNIIFDV  148
              + I G LI+++  PL FAN   L+ RL R    G  +               +++ D+
Sbjct  3    EAEEIPGILILRLDGPLDFANAESLRERLLRALEEGEIK---------------HVVLDL  47

Query  149  HGVTSIDGSGTQVLSEIVEGYVDQGTRVFFCRLPNRDVFRMFERSGIVEQCGGMTHFVPS  208
              V  ID SG   L E+ +    +G  +     P+ +V R  E++G+ +    +    P+
Sbjct  48   SAVPFIDSSGLGALEELYKELRRRGVELVLVG-PSPEVARTLEKTGLDD----IIKIFPT  102

Query  209  VDEA  212
            V EA
Sbjct  103  VAEA  106



Lambda      K        H        a         alpha
   0.323    0.141    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00023002

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426404 pfam01740, STAS, STAS domain. The STAS (after Sulphate...  56.1    5e-11


>CDD:426404 pfam01740, STAS, STAS domain.  The STAS (after Sulphate Transporter 
and AntiSigma factor antagonist) domain is found in the 
C terminal region of Sulphate transporters and bacterial 
antisigma factor antagonists. It has been suggested that this 
domain may have a general NTP binding function.
Length=106

 Score = 56.1 bits (136),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 32/124 (26%), Positives = 54/124 (44%), Gaps = 20/124 (16%)

Query  89   NVQLIEGALIVKIPEPLTFANTGDLKNRLRRLELYGSSRVHPSFPRMRSPENNKNIIFDV  148
              + I G LI+++  PL FAN   L+ RL R    G  +               +++ D+
Sbjct  3    EAEEIPGILILRLDGPLDFANAESLRERLLRALEEGEIK---------------HVVLDL  47

Query  149  HGVTSIDGSGTQVLSEIVEGYVDQGTRVFFCRLPNRDVFRMFERSGIVEQCGGMTHFVPS  208
              V  ID SG   L E+ +    +G  +     P+ +V R  E++G+ +    +    P+
Sbjct  48   SAVPFIDSSGLGALEELYKELRRRGVELVLVG-PSPEVARTLEKTGLDD----IIKIFPT  102

Query  209  VDEA  212
            V EA
Sbjct  103  VAEA  106



Lambda      K        H        a         alpha
   0.323    0.141    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00027436

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462200 pfam07541, EIF_2_alpha, Eukaryotic translation initiat...  106     7e-31


>CDD:462200 pfam07541, EIF_2_alpha, Eukaryotic translation initiation factor 
2 alpha subunit.  These proteins share a region of similarity 
that falls towards the C-terminus from pfam00575.
Length=112

 Score = 106 bits (266),  Expect = 7e-31, Method: Composition-based stats.
 Identities = 33/88 (38%), Positives = 49/88 (56%), Gaps = 5/88 (6%)

Query  8    NPDVWQDVEFPSEAVKKELTQYISKKLTPSPTKVRADIEVTCFGYEGIDAVKNALRTAEA  67
             P+V  D+  P E   + L +   ++LTP P K+RADIE+TCF  +GI+A+K AL+    
Sbjct  26   GPEVLDDLGIP-EEWIEALLEIAKERLTPPPVKIRADIELTCFAPDGIEAIKKALKAGAE  84

Query  68   NNT----PENQIKVKLVAPPLYVLTSQC  91
            +       +  IK+KLV  P Y +T   
Sbjct  85   STEEIKGEDVPIKIKLVGAPRYRITVTA  112



Lambda      K        H        a         alpha
   0.310    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00023001

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462200 pfam07541, EIF_2_alpha, Eukaryotic translation initiat...  141     6e-43


>CDD:462200 pfam07541, EIF_2_alpha, Eukaryotic translation initiation factor 
2 alpha subunit.  These proteins share a region of similarity 
that falls towards the C-terminus from pfam00575.
Length=112

 Score = 141 bits (358),  Expect = 6e-43, Method: Composition-based stats.
 Identities = 47/113 (42%), Positives = 67/113 (59%), Gaps = 6/113 (5%)

Query  127  YQKIGWPLNRKYGHAHDAF-KISITNPDVWQDVEFPSEAVKKELTQYISKKLTPSPTKVR  185
            Y++IGWPL  KYG  +DAF K +I  P+V  D+  P E   + L +   ++LTP P K+R
Sbjct  1    YEEIGWPLEEKYGSLYDAFEKAAIEGPEVLDDLGIP-EEWIEALLEIAKERLTPPPVKIR  59

Query  186  ADIEVTCFGYEGIDAVKNALRTAEANNT----PENQIKVKLVAPPLYVLTSQC  234
            ADIE+TCF  +GI+A+K AL+    +       +  IK+KLV  P Y +T   
Sbjct  60   ADIELTCFAPDGIEAIKKALKAGAESTEEIKGEDVPIKIKLVGAPRYRITVTA  112



Lambda      K        H        a         alpha
   0.314    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00023003

Length=116
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462200 pfam07541, EIF_2_alpha, Eukaryotic translation initiat...  104     5e-31


>CDD:462200 pfam07541, EIF_2_alpha, Eukaryotic translation initiation factor 
2 alpha subunit.  These proteins share a region of similarity 
that falls towards the C-terminus from pfam00575.
Length=112

 Score = 104 bits (262),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 33/88 (38%), Positives = 49/88 (56%), Gaps = 5/88 (6%)

Query  8    NPDVWQDVEFPSEAVKKELTQYISKKLTPSPTKVRADIEVTCFGYEGIDAVKNALRTAEA  67
             P+V  D+  P E   + L +   ++LTP P K+RADIE+TCF  +GI+A+K AL+    
Sbjct  26   GPEVLDDLGIP-EEWIEALLEIAKERLTPPPVKIRADIELTCFAPDGIEAIKKALKAGAE  84

Query  68   NNT----PENQIKVKLVAPPLYVLTSQC  91
            +       +  IK+KLV  P Y +T   
Sbjct  85   STEEIKGEDVPIKIKLVGAPRYRITVTA  112



Lambda      K        H        a         alpha
   0.313    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00023004

Length=310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462200 pfam07541, EIF_2_alpha, Eukaryotic translation initiat...  141     6e-43


>CDD:462200 pfam07541, EIF_2_alpha, Eukaryotic translation initiation factor 
2 alpha subunit.  These proteins share a region of similarity 
that falls towards the C-terminus from pfam00575.
Length=112

 Score = 141 bits (359),  Expect = 6e-43, Method: Composition-based stats.
 Identities = 47/113 (42%), Positives = 67/113 (59%), Gaps = 6/113 (5%)

Query  129  YQKIGWPLNRKYGHAHDAF-KISITNPDVWQDVEFPSEAVKKELTQYISKKLTPSPTKVR  187
            Y++IGWPL  KYG  +DAF K +I  P+V  D+  P E   + L +   ++LTP P K+R
Sbjct  1    YEEIGWPLEEKYGSLYDAFEKAAIEGPEVLDDLGIP-EEWIEALLEIAKERLTPPPVKIR  59

Query  188  ADIEVTCFGYEGIDAVKNALRTAEANNT----PENQIKVKLVAPPLYVLTSQC  236
            ADIE+TCF  +GI+A+K AL+    +       +  IK+KLV  P Y +T   
Sbjct  60   ADIELTCFAPDGIEAIKKALKAGAESTEEIKGEDVPIKIKLVGAPRYRITVTA  112



Lambda      K        H        a         alpha
   0.314    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 355153814


Query= TCONS_00023005

Length=670


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 850953830


Query= TCONS_00023006

Length=313


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00027437

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00023007

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00027438

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00023008

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00027440

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00027439

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00023009

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00023010

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00023011

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396255 pfam01593, Amino_oxidase, Flavin containing amine oxid...  76.8    1e-17
CDD:433218 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like...  52.5    1e-10


>CDD:396255 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase. 
 This family consists of various amine oxidases, including 
maze polyamine oxidase (PAO) and various flavin containing 
monoamine oxidases (MAO). The aligned region includes the 
flavin binding site of these enzymes. The family also contains 
phytoene dehydrogenases and related enzymes. In vertebrates 
MAO plays an important role regulating the intracellular 
levels of amines via there oxidation; these include various 
neurotransmitters, neurotoxins and trace amines. In lower eukaryotes 
such as aspergillus and in bacteria the main role 
of amine oxidases is to provide a source of ammonium. PAOs in 
plants, bacteria and protozoa oxidase spermidine and spermine 
to an aminobutyral, diaminopropane and hydrogen peroxide 
and are involved in the catabolism of polyamines. Other members 
of this family include tryptophan 2-monooxygenase, putrescine 
oxidase, corticosteroid binding proteins and antibacterial 
glycoproteins.
Length=446

 Score = 76.8 bits (189),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 26/69 (38%), Positives = 39/69 (57%), Gaps = 1/69 (1%)

Query  49   FAGLTVARDLGFKGKKVLLIEARDRIGGRCWTVDTGETAKLEMGGTWVHWIQPHVFSELQ  108
             AGL  AR+L   G  V ++EARDR+GGR  TV   +   +E+G  W H  QP + + L+
Sbjct  1    LAGLAAARELLRAGHDVTVLEARDRVGGRIRTV-RDDGFLIELGAMWFHGAQPPLLALLK  59

Query  109  RCDLDEFVE  117
               L++ + 
Sbjct  60   ELGLEDRLV  68


>CDD:433218 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain. 
 
Length=67

 Score = 52.5 bits (127),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (45%), Gaps = 6/67 (9%)

Query  44   VIGAGFAGLTVARDLGFKGKKVLLIEARDRIGGRCWT-VDTGETAKLEMGGTWVHWIQPH  102
            ++GAG AGL  A  L  +G +VL++E RDR+GG  ++    G            H     
Sbjct  1    IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLGGNAYSYRVPGYVFDYGA-----HIFHGS  55

Query  103  VFSELQR  109
                ++ 
Sbjct  56   DEPNVRD  62



Lambda      K        H        a         alpha
   0.318    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00023012

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396255 pfam01593, Amino_oxidase, Flavin containing amine oxid...  154     2e-42


>CDD:396255 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase. 
 This family consists of various amine oxidases, including 
maze polyamine oxidase (PAO) and various flavin containing 
monoamine oxidases (MAO). The aligned region includes the 
flavin binding site of these enzymes. The family also contains 
phytoene dehydrogenases and related enzymes. In vertebrates 
MAO plays an important role regulating the intracellular 
levels of amines via there oxidation; these include various 
neurotransmitters, neurotoxins and trace amines. In lower eukaryotes 
such as aspergillus and in bacteria the main role 
of amine oxidases is to provide a source of ammonium. PAOs in 
plants, bacteria and protozoa oxidase spermidine and spermine 
to an aminobutyral, diaminopropane and hydrogen peroxide 
and are involved in the catabolism of polyamines. Other members 
of this family include tryptophan 2-monooxygenase, putrescine 
oxidase, corticosteroid binding proteins and antibacterial 
glycoproteins.
Length=446

 Score = 154 bits (391),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 96/462 (21%), Positives = 157/462 (34%), Gaps = 44/462 (10%)

Query  43   FAGLTVARDLGFKGKKVLLIEARDRIGGRCWTVDTGETAKLEMGGTWVHWIQPHVFSELQ  102
             AGL  AR+L   G  V ++EARDR+GGR  TV   +   +E+G  W H  QP + + L+
Sbjct  1    LAGLAAARELLRAGHDVTVLEARDRVGGRIRTV-RDDGFLIELGAMWFHGAQPPLLALLK  59

Query  103  RCDLDEFVETVAFPENCESVKKASRQDPAVVHD-PAEGQAMMEQLEGLMAKFFDIDGQGG  161
               L++ +           +    R+ P      PA  + ++E       +   I  +  
Sbjct  60   ELGLEDRLVLPDPAPFYTVLFAGGRRYPGDFRRVPAGWEGLLE-----FGRLLSIPEKLR  114

Query  162  RSVIPFPFNMASSTNHNPEYLELDKLSIADRVAQMPDCDEEQRAVLG-AQAASFYGIAPE  220
              +           +   +  +LD  S+A+ +  +         V         +   P 
Sbjct  115  LGLAALA-------SDALDEFDLDDFSLAESLLFLGRRGPGDVEVWDRLIDPELFAALPF  167

Query  221  KGAFTEVLHTQALCNFDPAMTEIATMKYK-----IAEGTTAFALAILNDFKGDRI-FSSP  274
                     ++            A +           G  A   A+     G  +  ++ 
Sbjct  168  ASGAFAGDPSELSAGLA-LPLLWALLGEGGSLLLPRGGLGALPDALAAQLLGGDVRLNTR  226

Query  275  VQSISQPSDHAPVAVTLKNGEQFTSNSVVSTIPVNVLSSITFNPPLSPLKKEAFSDAVTP  334
            V+SI +  D   V VTL +GE   +++V+ T+P+ VL  I F PPL P K  A  +    
Sbjct  227  VRSIDREGD--GVTVTLTDGEVIEADAVIVTVPLGVLKRILFTPPLPPEKARAIRNLGYG  284

Query  335  ARIDKLLVCTPTKF--ANGFTVSCE-------GGDMPFASGFLDGTHGSHNLLTLLTHPD  385
              ++K+ +    KF    G                                LL  +   D
Sbjct  285  P-VNKVHLEFDRKFWPDLGLLGLLSELLTGLGTAFSWLTFPNRAPPGKGLLLLVYVGPGD  343

Query  386  --NKFDSAEDNIRL------VETLHPSGV-EVHSVYGHIWSDDPYAGGVMPVRKPG-FLG  435
               + +   D   L      +  L      E   V    W  DP+  G   + + G    
Sbjct  344  RARELEGLSDEELLQAVLRDLRKLFGEEAPEPLRVLVSDWHTDPWPRGSYSLPQYGPGHD  403

Query  436  KYHDEIRKPHGNVHFCGSDFADGWRGFISGAFEDAYRVTREV  477
             Y    R P   + F G   + G+ G + GA E   R  R V
Sbjct  404  DYRPLARTPDPGLFFAGEHTSTGYPGTVEGAIESGRRAARAV  445



Lambda      K        H        a         alpha
   0.318    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595027938


Query= TCONS_00027441

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.150    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00023013

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.150    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00023014

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00023015

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.148    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00023016

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.148    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00027442

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462514 pfam08546, ApbA_C, Ketopantoate reductase PanE/ApbA C ...  110     9e-30
CDD:426831 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA. Thi...  105     1e-27


>CDD:462514 pfam08546, ApbA_C, Ketopantoate reductase PanE/ApbA C terminal. 
 This is a family of 2-dehydropantoate 2-reductases also 
known as ketopantoate reductases, EC:1.1.1.169. The reaction 
catalyzed by this enzyme is: (R)-pantoate + NADP(+) <=> 2-dehydropantoate 
+ NADPH. AbpA catalyzes the NADPH reduction of 
ketopantoic acid to pantoic acid in the alternative pyrimidine 
biosynthetic (APB) pathway. ApbA and PanE are allelic. 
ApbA, the ketopantoate reductase enzyme is required for the 
synthesis of thiamine via the APB biosynthetic pathway.
Length=125

 Score = 110 bits (276),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 44/130 (34%), Positives = 66/130 (51%), Gaps = 6/130 (5%)

Query  275  EILQVQLEKLAVNAFCNPLCALNDAKNEFLFSVPDTRRAILTEISNVVLALPELKGVQGL  334
            +I   + EKL VNA  NPL AL    N  L   P+ R  ++  +    +A+ + +GV   
Sbjct  1    DIRLARWEKLLVNAAINPLTALTGCTNGELLDSPEARA-LIRALMREAVAVAQAEGV---  56

Query  335  EERFSVARLEKTVNDIIAKTANTTCSMVWDLRAGRETAIQFINGSWSRMGKMVGVDTPVN  394
                S  RL + V  ++ KT +   SM+ D+ AGR T I +ING   R+ +  GV TP N
Sbjct  57   --ALSEDRLIEYVLAVLRKTPDNKSSMLQDVEAGRPTEIDYINGYVVRLARKHGVPTPTN  114

Query  395  DALVEQIKMR  404
            + L   +K +
Sbjct  115  ETLYALLKAK  124


>CDD:426831 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA.  This is a 
family of 2-dehydropantoate 2-reductases also known as ketopantoate 
reductases, EC:1.1.1.169. The reaction catalyzed by 
this enzyme is: (R)-pantoate + NADP(+) <=> 2-dehydropantoate 
+ NADPH. AbpA catalyzes the NADPH reduction of ketopantoic 
acid to pantoic acid in the alternative pyrimidine biosynthetic 
(APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate 
reductase enzyme is required for the synthesis of 
thiamine via the APB biosynthetic pathway.
Length=147

 Score = 105 bits (263),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 41/173 (24%), Positives = 66/173 (38%), Gaps = 26/173 (15%)

Query  65   VHILGLGSIGTFVAHSVSEIPNGPSVILLLHRRSLLDHYRQNRNQIFFESRHGVHQSSTG  124
            + ILG G+IG+ +   +++   G  V L+L            +N +   S  G       
Sbjct  1    IAILGAGAIGSLLGARLAK--AGHDVTLILRGAE---LAAIKKNGLRLTSPGGERI----  51

Query  125  YGLEMTQDNQWYPVSDESPSDCPITSHISNLIICVKATQTVSALRPLVHRLNSTSNILFL  184
                        P    +         I  +I+ VKA QT  AL  +   L   + +L L
Sbjct  52   ---------VPPPAVTSASES---LGPIDLVIVTVKAYQTEEALEDIAPLLGPNTVVLLL  99

Query  185  QNGSGMIEEVDAHLFQDPLTRPNYLIGVISHGVTLNSPFNITHTGFSATSIGP  237
            QNG G  E +   + ++ +     L GV +HG     P ++ H G    +IG 
Sbjct  100  QNGLGHEEVLREAVPRERV-----LGGVTTHGAFREGPGHVHHAGPGRITIGE  147



Lambda      K        H        a         alpha
   0.319    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00027443

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            63.2    2e-12


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 63.2 bits (154),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 40/176 (23%), Positives = 72/176 (41%), Gaps = 4/176 (2%)

Query  32   LDICIAFNSALGSSLPSGASSEIVSAFDLDKDHVPLVLLNSVYLAGFAVGPLVFGPLSEY  91
            L +     +   S L       +     +    + L+L  +++  G+A+   + G LS+ 
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLL--TLFSLGYALAQPLAGRLSDR  58

Query  92   LGRQPVLIGTYIGYTIFTTACALAPTYASLPAFRSLCGIHAAAPKAVLGGLYSDIYDEHG  151
             GR+ VL+   + + +       A +   L   R L G+ A A       L +D +    
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE-  117

Query  152  ERGTAMGFFMLMRTLGPQLSPIISGY-AALLSWRRVFRVALVIAGGGMPVVLLLPE  206
            ERG A+G       LG  L P++ G  A+L  WR  F +  +++     ++LL   
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRP  173



Lambda      K        H        a         alpha
   0.325    0.141    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00023017

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            62.1    3e-11


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 62.1 bits (151),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 4/172 (2%)

Query  32   LDICIAFNSALGSSLPSGASSEIVSAFDLDKDHVPLVLLNSVYLAGFAVGPLVFGPLSEY  91
            L +     +   S L       +     +    + L+L  +++  G+A+   + G LS+ 
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLL--TLFSLGYALAQPLAGRLSDR  58

Query  92   LGRQPVLIGTYIGYTIFTTACALAPTYASLPAFRSLCGIHAAAPKAVLGGLYSDIYDEHG  151
             GR+ VL+   + + +       A +   L   R L G+ A A       L +D +    
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE-  117

Query  152  ERGTAMGFFMLMRTLGPQLSPIISGY-AALLSWRRVFRVALVIAGVSMARIF  202
            ERG A+G       LG  L P++ G  A+L  WR  F +  +++ ++   + 
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLL  169



Lambda      K        H        a         alpha
   0.327    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00023018

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            63.2    6e-12


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 63.2 bits (154),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 4/172 (2%)

Query  32   LDICIAFNSALGSSLPSGASSEIVSAFDLDKDHVPLVLLNSVYLAGFAVGPLVFGPLSEY  91
            L +     +   S L       +     +    + L+L  +++  G+A+   + G LS+ 
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLL--TLFSLGYALAQPLAGRLSDR  58

Query  92   LGRQPVLIGTYIGYTIFTTACALAPTYASLPAFRSLCGIHAAAPKAVLGGLYSDIYDEHG  151
             GR+ VL+   + + +       A +   L   R L G+ A A       L +D +    
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE-  117

Query  152  ERGTAMGFFMLMRTLGPQLSPIISGY-AALLSWRRVFRVALVIAGVSMARIF  202
            ERG A+G       LG  L P++ G  A+L  WR  F +  +++ ++   + 
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLL  169



Lambda      K        H        a         alpha
   0.326    0.141    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00023019

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462514 pfam08546, ApbA_C, Ketopantoate reductase PanE/ApbA C ...  110     9e-30
CDD:426831 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA. Thi...  105     1e-27


>CDD:462514 pfam08546, ApbA_C, Ketopantoate reductase PanE/ApbA C terminal. 
 This is a family of 2-dehydropantoate 2-reductases also 
known as ketopantoate reductases, EC:1.1.1.169. The reaction 
catalyzed by this enzyme is: (R)-pantoate + NADP(+) <=> 2-dehydropantoate 
+ NADPH. AbpA catalyzes the NADPH reduction of 
ketopantoic acid to pantoic acid in the alternative pyrimidine 
biosynthetic (APB) pathway. ApbA and PanE are allelic. 
ApbA, the ketopantoate reductase enzyme is required for the 
synthesis of thiamine via the APB biosynthetic pathway.
Length=125

 Score = 110 bits (276),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 44/130 (34%), Positives = 66/130 (51%), Gaps = 6/130 (5%)

Query  275  EILQVQLEKLAVNAFCNPLCALNDAKNEFLFSVPDTRRAILTEISNVVLALPELKGVQGL  334
            +I   + EKL VNA  NPL AL    N  L   P+ R  ++  +    +A+ + +GV   
Sbjct  1    DIRLARWEKLLVNAAINPLTALTGCTNGELLDSPEARA-LIRALMREAVAVAQAEGV---  56

Query  335  EERFSVARLEKTVNDIIAKTANTTCSMVWDLRAGRETAIQFINGSWSRMGKMVGVDTPVN  394
                S  RL + V  ++ KT +   SM+ D+ AGR T I +ING   R+ +  GV TP N
Sbjct  57   --ALSEDRLIEYVLAVLRKTPDNKSSMLQDVEAGRPTEIDYINGYVVRLARKHGVPTPTN  114

Query  395  DALVEQIKMR  404
            + L   +K +
Sbjct  115  ETLYALLKAK  124


>CDD:426831 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA.  This is a 
family of 2-dehydropantoate 2-reductases also known as ketopantoate 
reductases, EC:1.1.1.169. The reaction catalyzed by 
this enzyme is: (R)-pantoate + NADP(+) <=> 2-dehydropantoate 
+ NADPH. AbpA catalyzes the NADPH reduction of ketopantoic 
acid to pantoic acid in the alternative pyrimidine biosynthetic 
(APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate 
reductase enzyme is required for the synthesis of 
thiamine via the APB biosynthetic pathway.
Length=147

 Score = 105 bits (263),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 41/173 (24%), Positives = 66/173 (38%), Gaps = 26/173 (15%)

Query  65   VHILGLGSIGTFVAHSVSEIPNGPSVILLLHRRSLLDHYRQNRNQIFFESRHGVHQSSTG  124
            + ILG G+IG+ +   +++   G  V L+L            +N +   S  G       
Sbjct  1    IAILGAGAIGSLLGARLAK--AGHDVTLILRGAE---LAAIKKNGLRLTSPGGERI----  51

Query  125  YGLEMTQDNQWYPVSDESPSDCPITSHISNLIICVKATQTVSALRPLVHRLNSTSNILFL  184
                        P    +         I  +I+ VKA QT  AL  +   L   + +L L
Sbjct  52   ---------VPPPAVTSASES---LGPIDLVIVTVKAYQTEEALEDIAPLLGPNTVVLLL  99

Query  185  QNGSGMIEEVDAHLFQDPLTRPNYLIGVISHGVTLNSPFNITHTGFSATSIGP  237
            QNG G  E +   + ++ +     L GV +HG     P ++ H G    +IG 
Sbjct  100  QNGLGHEEVLREAVPRERV-----LGGVTTHGAFREGPGHVHHAGPGRITIGE  147



Lambda      K        H        a         alpha
   0.319    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00027444

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00023021

Length=542


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682843766


Query= TCONS_00023024

Length=606


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 768135992


Query= TCONS_00027445

Length=405


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00023023

Length=629


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790487440


Query= TCONS_00023025

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        83.1    4e-20


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 83.1 bits (206),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 36/134 (27%), Positives = 64/134 (48%), Gaps = 8/134 (6%)

Query  217  LGADEVVEYAALG--ENVDG-SFDLIVDTVGGKILRRCWAWVAGHGTLISVDSASFDFVN  273
            LGADEV++Y      +   G   D+++DTVGG+        + G G L+++         
Sbjct  1    LGADEVIDYRTTDFVQATGGEGVDVVLDTVGGEAFEASLRVLPGGGRLVTIGGPPLSAGL  60

Query  274  EHSKCGLNKGKEDVRALFFIVQSD--AEALRKLATLADSGRLKLFVLQTYDLSQAQAAYE  331
                    +G   V+ LF  V+ +  A+ L++LA L + G+L+  + + + L +A  A+ 
Sbjct  61   --LLPARKRGGRGVKYLFLFVRPNLGADILQELADLIEEGKLRPVIDRVFPLEEAAEAHR  118

Query  332  QASSKASGYGKVVI  345
               S     GK+V+
Sbjct  119  YLES-GRARGKIVL  131



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00027446

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00023026

Length=222


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00027447

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose de...  101     2e-26


>CDD:435066 pfam16010, CDH-cyt, Cytochrome domain of cellobiose dehydrogenase. 
 CDH-cyt is the cytochrome domain, at the N-terminus, 
of cellobiose dehydrogenase. CDH-cyt folds as a beta sandwich 
with the topology of the antibody Fab V(H) domain and binds 
iron. The haem iron is ligated by Met83 and His181 in UniProtKB:Q01738.
Length=175

 Score = 101 bits (255),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 33/168 (20%), Positives = 60/168 (36%), Gaps = 10/168 (6%)

Query  22   QTFTPAAETAIAYSVNVPASTAGSGSSGSGPIFIQ-MRSTKEVQWFAWGQGAVMQGANIF  80
            Q +T +      + + +P        +     FI  + +   V W     G  M    + 
Sbjct  11   QRWTDST-GGFTFGIALPEDA-----TTDADEFIGQLVAPLTVGWAGVSLGGSMTNNLLL  64

Query  81   VVYANGTGITVSPRLGVEHVEP-LHNPQARFSILNGSGISNGILTANIRCDSCITW--PG  137
            V + NG  +  S R    +V P ++   A  + + G+ +++   T   RC  C +W   G
Sbjct  65   VAWPNGGNVVTSFRWATGYVSPPVYTGDATLTQIPGTSVNSTHFTLTFRCQGCTSWDGGG  124

Query  138  GHEDVTSTSSPWIWAVKHGPMLDSDSVSATITIHDFSGVATVNMKQAT  185
                 +  ++   WA       D  S  +T   HD  G    ++  A 
Sbjct  125  TSGSASGGNAVLGWAQSTTAPTDPSSPDSTFGQHDNFGQFGADLAAAR  172



Lambda      K        H        a         alpha
   0.322    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00023028

Length=585


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0795    0.140     1.90     42.6     43.6 

Effective search space used: 736753004


Query= TCONS_00023029

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461559 pfam05141, DIT1_PvcA, Pyoverdine/dityrosine biosynthes...  395     2e-137


>CDD:461559 pfam05141, DIT1_PvcA, Pyoverdine/dityrosine biosynthesis protein. 
 DIT1 is involved in synthesising dityrosine. Dityrosine 
is a sporulation-specific component of the yeast ascospore 
wall that is essential for the resistance of the spores to 
adverse environmental conditions. Pyoverdine biosynthesis protein 
PvcA is involved in the biosynthesis of pyoverdine, a 
cyclized isocyano derivative of tyrosine. It has a modified 
Rossmann fold.
Length=270

 Score = 395 bits (1018),  Expect = 2e-137, Method: Composition-based stats.
 Identities = 135/274 (49%), Positives = 172/274 (63%), Gaps = 14/274 (5%)

Query  42   IERFVAAGTRIEACLPAFPFKSANKVYKVLGSLPDKAEELALDRLNTMCARVREVYPPGL  101
            +  FV+ G  IE  LPAFPFKS N   KVLG LPDK EELAL RLN +C  ++EVYPPG 
Sbjct  1    VRYFVSRGEPIEMVLPAFPFKSPNP-DKVLGKLPDKGEELALARLNGLCEDIKEVYPPGA  59

Query  102  QVAIISDGITYND--------TWAYGEALRQMAAQKQFMYIVFSRIKDLLDIPLPEQMSE  153
            +V I+SDG  +ND         WAYGEALR++AA+K   +I FSR+KDLL +       +
Sbjct  60   KVTIVSDGHVFNDLLGVSDEDVWAYGEALRELAAEKGLTHIRFSRLKDLLGLGEYLP-ED  118

Query  154  IVYVANCTTFRRLLLNKYERADLDIDHEIASNPDTKLTYLGYRRFLESDLKYIFPRGAHR  213
              Y AN    RR L+ +Y   D D+  EI  +PDT LTY GY RFLE DL+ + P G   
Sbjct  119  TKYTANADLCRRELMERYGPDDFDLRKEIKEDPDTLLTYRGYSRFLEEDLR-LLPPGQGL  177

Query  214  SAHSYKRDCKYLAKQMLIRGDAFAQAIKTSYPNHLRLSIHES-VAGTKLSISLLNTKTGF  272
            S  +YK+D K +AK+M+ RGDAF+  ++  +P+H+RLSIH S   G K  ISLL TK GF
Sbjct  178  SKKAYKKDVKKVAKEMIQRGDAFSNLVELRFPDHVRLSIHPSNNGGPKFGISLLPTKDGF  237

Query  273  -TTPWHCSVAQLANGEWISAPMGEFRKDDRLELV  305
              TPWH SV  LA+GE+ +    +  + D  ELV
Sbjct  238  GPTPWHSSVVVLADGEFRTLHRSDVDE-DAHELV  270



Lambda      K        H        a         alpha
   0.319    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00027449

Length=306


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00023030

Length=640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 75.0    8e-15


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 75.0 bits (185),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 86/206 (42%), Gaps = 12/206 (6%)

Query  6    LPQLDELLDAVSTDPFPYTKKFDEAINDPFCFLHTSGTTGVPKPIPWSHG-LIGTMDAVR  64
            + + + L +       P         +D    ++TSGTTG PK +  +H  L+  + +++
Sbjct  129  VLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIK  188

Query  65   LLPPGADGDLPPWTTDWKTGDTIYSSFPMSHGAGIIMNILMPALFNLHCVFGPAGVLPNI  124
             + P   G  P         D + S+ P+ H  G+ + +L P L     V  P     + 
Sbjct  189  RVRPRGFGLGP--------DDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDP  240

Query  125  NLVDALAVSTRIDIWSMVPSLVDELGETPAVLSKLKSS-KFICASGGPVSPVSAGKVNEV  183
              +  L    ++ +   VP+L++ L E  A    L SS + + + G P+ P  A +  E+
Sbjct  241  AALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFREL  300

Query  184  --IRVLNLTGTTEGLFMGNLIPPRED  207
                ++N  G TE   +     P ++
Sbjct  301  FGGALVNGYGLTETTGVVTTPLPLDE  326



Lambda      K        H        a         alpha
   0.321    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 806710130


Query= TCONS_00023031

Length=993
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 74.7    2e-14
CDD:460564 pfam02458, Transferase, Transferase family. This famil...  70.9    3e-13


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 74.7 bits (184),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 86/206 (42%), Gaps = 12/206 (6%)

Query  6    LPQLDELLDAVSTDPFPYTKKFDEAINDPFCFLHTSGTTGVPKPIPWSHG-LIGTMDAVR  64
            + + + L +       P         +D    ++TSGTTG PK +  +H  L+  + +++
Sbjct  129  VLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIK  188

Query  65   LLPPGADGDLPPWTTDWKTGDTIYSSFPMSHGAGIIMNILMPALFNLHCVFGPAGVLPNI  124
             + P   G  P         D + S+ P+ H  G+ + +L P L     V  P     + 
Sbjct  189  RVRPRGFGLGP--------DDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDP  240

Query  125  NLVDALAVSTRIDIWSMVPSLVDELGETPAVLSKLKSS-KFICASGGPVSPVSAGKVNEV  183
              +  L    ++ +   VP+L++ L E  A    L SS + + + G P+ P  A +  E+
Sbjct  241  AALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFREL  300

Query  184  --IRVLNLTGTTEGLFMGNLIPPRED  207
                ++N  G TE   +     P ++
Sbjct  301  FGGALVNGYGLTETTGVVTTPLPLDE  326


>CDD:460564 pfam02458, Transferase, Transferase family.  This family includes 
a number of transferase enzymes. These include anthranilate 
N-hydroxycinnamoyl/benzoyltransferase that catalyzes the 
first committed reaction of phytoalexin biosynthesis. Deacetylvindoline 
4-O-acetyltransferase EC:2.3.1.107 catalyzes the 
last step in vindoline biosynthesis is also a member of this 
family. The motif HXXXD is probably part of the active site. 
The family also includes trichothecene 3-O-acetyltransferase.
Length=434

 Score = 70.9 bits (174),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 101/500 (20%), Positives = 167/500 (33%), Gaps = 98/500 (20%)

Query  503  AQHKARQSFSLNAFDYVNPNHGMGLVLYFPIRDGVSYEQVFANLQAGLNRTFDLIPALSG  562
            A+   +Q+  L+  D + P   +    ++        E V   L+  L+ T      L+G
Sbjct  14   AEPTPQQTLPLSNLDLLLPPVIVKACYFYKKNLEFPQENVSEKLKTSLSETLVHFYPLAG  73

Query  563  KMT---------DCSEQGIGYTKGDLCVTIPPLAKADSARNRLVYKDLSAVLPSFDDLRK  613
            ++           C+++G  + +    V +  L         L   D +        ++ 
Sbjct  74   RLKTQPSGRLELSCNDEGADFVEARADVELSDL-------KDLEPDDSAENFLPQLAVKN  126

Query  614  GGFAPSAFSDTLANFVSGGCILAVDLNHCCLDGLGAMVALKAWAENCRYLQGDQSATCGW  673
             G A   F+  +  F  GG  L   ++H   DG      + +WAE  R   G +  T   
Sbjct  127  PGHAWPLFAVQVTKFKCGGFALGCSVSHAICDGYSLGTFICSWAELAR---GKKPPTV--  181

Query  674  YDPESFNHSLPEILHRQEGWARPLHEIDPGTWGFLPFFPPEDEETNPRCEKATEGSLPAR  733
                 F   L  +  R E    P    DP   G    FP  +  T               
Sbjct  182  --TPIFRREL--LYPRPE---PPSVPFDP---GEERDFPASETTTTD-------------  218

Query  734  PIFPLHPVWPLPRAERCLKTTMF-LVTPEKLELLQQDVIADPATNGITPSISDIVQAFFW  792
                          E  LK  +F  ++  +L+ L+    A+ ++NG   +  + V A  W
Sbjct  219  --------------EWVLKKIVFEALSISQLKELKTK--ANSSSNGKPVTRFESVTALLW  262

Query  793  RAAIKARYRVATEIRKQKFSPDAVSILELPTDTRPHFSSRLPPTYMGSMLILNRTSMPIE  852
            R A KAR             PD  ++L +  D R     +LPP Y G+        + ++
Sbjct  263  RCAAKAR----------ALDPDGPTVLGIAVDIRSRLPPKLPPGYFGNAYS----DVYVK  308

Query  853  TLCSA---ETSIAKVALLLRQSAARITPSLVHD--AFTLLQSLPGHRRFSTANMGLEHMH  907
            +       E     V L+       IT   + +   +T    L  +  +     G +   
Sbjct  309  STAGEVLSEELSWIVELIKEAVKNAITKEYLSNEIDWTENSILMANLTYK----GKKDGG  364

Query  908  AMI-SNMLLFPTSEI--GFGDAFFANGGVPETMRPQLERGNGRFRFLAVFPLRKD-GGVE  963
                S+    P  E+  G+G   +    VP       E  N       +FP R D GGVE
Sbjct  365  LFTVSSWRRLPFYEVDFGWGSPVYVVPVVPS------ETDNTVL----LFPSRDDDGGVE  414

Query  964  LVLGTHREELEMLVTDEEFT  983
            LV+    E +     + E  
Sbjct  415  LVVTLPEEAMSKFEEEFELL  434



Lambda      K        H        a         alpha
   0.321    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1270040772


Query= TCONS_00023032

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00023033

Length=1290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 195     8e-55
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  75.4    2e-14


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 195 bits (498),  Expect = 8e-55, Method: Composition-based stats.
 Identities = 103/433 (24%), Positives = 172/433 (40%), Gaps = 46/433 (11%)

Query  239  IQRTCQQQPHAMAVCAWDG-SWSYQELDCQASHLASQLCDHGIEPEKFVGLLFEKSKWTT  297
            ++R   + P   A+   +G   +Y+ELD +A+ LA+ L   G+     V +L   S    
Sbjct  1    LERQAARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWV  60

Query  298  VAILAVLKAGGAFVLLDPTQPAAYLSAICTMTRTALLLCSSHNQ-------RLAAELRQT  350
            VA LA LKAG  +V L+P  PA  L+ I   +   +L+     +           E+ + 
Sbjct  61   VAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKL  120

Query  351  TIQVPRDP------YHGAMPTSDFRRQSSPAVQPHHTLYACFTSGSTGRPKGFIIDH---  401
             + + RDP             +D      P   P    Y  +TSG+TG+PKG ++ H   
Sbjct  121  VLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNL  180

Query  402  VAFNSGLQT-YAHATGLGCDSRVFQFASYSFAPS-ITDQLASLIVGASICVPAEEELQND  459
            VA    ++       GLG D RV                L  L+ GA++ +P      + 
Sbjct  181  VANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDP  240

Query  460  VE--GSISQLQATWLKLTPSVARTL------DPGRLPCVKTLILVGEEAQVSDVAAWQDH  511
                  I + + T L   P++   L          L  ++ ++  G          +++ 
Sbjct  241  AALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFREL  300

Query  512  -GITVLGLYGQSENAKGTMVS-RKSSEDADPGNIGSPFCAVGW-VVDPDDYHRLMPIGAT  568
             G  ++  YG +E             +    G++G P       +VD +     +P G  
Sbjct  301  FGGALVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDET-GEPVPPGEP  359

Query  569  GELLLESPCLCRGYIDNEDETKLAFVSKPSWLTQVRGQGTAQPLLRTGDIVRYNCVDGTF  628
            GEL +  P + +GY+++ + T  AF     W              RTGD+ R +  DG  
Sbjct  360  GELCVRGPGVMKGYLNDPELTAEAFDED-GW-------------YRTGDLGRRDE-DGYL  404

Query  629  CLVGRKGNRVKLR  641
             +VGRK +++KL 
Sbjct  405  EIVGRKKDQIKLG  417


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 75.4 bits (186),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 76/338 (22%), Positives = 121/338 (36%), Gaps = 57/338 (17%)

Query  915   GQLDPEQLRLAWTRVIQAFPILRTVFPR-FRGRFIQLVVRDIGDSNFY-----RVVEAPS  968
             G+LDPE+L  A   +I     LRTVF R   G  +Q V+ +             + E+  
Sbjct  37    GELDPERLEKALQELINRHDALRTVFIRQENGEPVQ-VILEERPFELEIIDISDLSESEE  95

Query  969   GQTAEEWARALCTEAIQFRCPVDR-PVAQLTLIQ-AAGSSALVLRLCHAQYDGSCLEHLV  1026
              +  E + +            +++ P+ +  L + A     L+L + H   DG  L  L+
Sbjct  96    EEAIEAFIQRDLQSPF----DLEKGPLFRAGLFRIAENRHHLLLSMHHIIVDGVSLGILL  151

Query  1027  RSLMMAY----HGRPLVVESDFQAYTRTCLRL-------RIPEVLDFWRRFLAGSSP-TQ  1074
             R L   Y     G PL        Y      L          +   +W   L G  P  Q
Sbjct  152   RDLADLYQQLLKGEPL-PLPPKTPYKDYAEWLQQYLQSEDYQKDAAYWLEQLEGELPVLQ  210

Query  1075  LASSMTGDREAARKINRSF------------FRREVNSLAAPAGFTLATVVKAAWSWVLR  1122
             L       ++ AR  +RSF                +  LA   G TL  V+ AA+  +L 
Sbjct  211   LP------KDYARPADRSFKGDRLSFTLDEDTEELLRKLAKAHGTTLNDVLLAAYGLLLS  264

Query  1123  NETRSEDVVFGQLVSCRGSVPLPHADTIIGPCMNIIPVRVG-------RDLLGAVQAQHA  1175
               T  +D+V G   S R   P P  + ++G  +N +P+R+         +L+  VQ    
Sbjct  265   RYTGQDDIVVGTPGSGR---PSPDIERMVGMFVNTLPLRIDPKGGKTFSELIKRVQEDLL  321

Query  1176  QTMEFDMIGMDEIVRHCTSW-PAGTEP--DSIIIHENF  1210
                        ++V            P  D +   +N+
Sbjct  322   SAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSFQNY  359



Lambda      K        H        a         alpha
   0.322    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1640907200


Query= TCONS_00023036

Length=391
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372989 pfam14269, Arylsulfotran_2, Arylsulfotransferase (ASST)    171     4e-51


>CDD:372989 pfam14269, Arylsulfotran_2, Arylsulfotransferase (ASST).  
Length=301

 Score = 171 bits (436),  Expect = 4e-51, Method: Composition-based stats.
 Identities = 91/298 (31%), Positives = 138/298 (46%), Gaps = 43/298 (14%)

Query  11   EGSDHLCYHQGVQTEGYTRGYYTILDDAYQETTTVHSGNGMFPG---------DLHELRV  61
            +    + + +G    G+  G  TILD +Y+E  TV                  D HE  +
Sbjct  6    DDGPVITFWEGDGNPGFGYGTLTILDSSYEEIWTVTLPGNFVTPDHETFDSYIDHHESEI  65

Query  62   IDGKTALISVYQTEPYNLAAYGIGPGNGWVISGAFQEVDIKTGRVLFEWKSLDHV---PL  118
             D  T  ++ Y     +L + G GP +GWV+ G   E+DI+T  VLF W +L+HV   PL
Sbjct  66   TDDGTIWVTAYNVTQADLTSVG-GPRDGWVLDGLIYEIDIETNEVLFRWSALEHVDQIPL  124

Query  119  SATLTPLQLDGVVGDGRTNGSAWD----------------------SCIYKVSGATGSII  156
              ++ PL        G +    WD                        ++ +  + G ++
Sbjct  125  ELSVQPL-----GDFGGSEKFPWDYFHLNSVPKFGDGDYLISLRYYCSLFLIRPSNGKVM  179

Query  157  WQLGG-TQSSFQLS-GYNFSYQHDARFHEENETTTVLSFFDNASNLHQNTSSASSGKIVS  214
            WQL G T   F+L     FSYQHDARF  + E   V+S F+NA N   N  + ++G I+ 
Sbjct  180  WQLNGPTGGDFELGPNSTFSYQHDARFVNQTEDKIVISLFNNA-NTPFNGRAPTTGLILD  238

Query  215  IDHQTNTSTLTRQYHAPGNGLLSLFQGNTQVLPNKHVLIGWGNHPAISEHTEDGTAIF  272
            +D Q  T TL R+     + + S+ QG+ Q+LPN HVL+G G+   I E+  +G  + 
Sbjct  239  VDLQNKTVTLLRKLWDAEDPIHSVSQGSYQLLPNGHVLVGHGSIGRIEEYDANGKIVM  296



Lambda      K        H        a         alpha
   0.314    0.130    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00023034

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372989 pfam14269, Arylsulfotran_2, Arylsulfotransferase (ASST)    219     4e-69
CDD:399139 pfam05935, Arylsulfotrans, Arylsulfotransferase (ASST)...  93.2    2e-21


>CDD:372989 pfam14269, Arylsulfotran_2, Arylsulfotransferase (ASST).  
Length=301

 Score = 219 bits (559),  Expect = 4e-69, Method: Composition-based stats.
 Identities = 105/298 (35%), Positives = 155/298 (52%), Gaps = 21/298 (7%)

Query  11   EGSDHLCYHQGVQTEGYTRGYYTILDDAYQETTTVHSGNGMFPG---------DLHELRV  61
            +    + + +G    G+  G  TILD +Y+E  TV                  D HE  +
Sbjct  6    DDGPVITFWEGDGNPGFGYGTLTILDSSYEEIWTVTLPGNFVTPDHETFDSYIDHHESEI  65

Query  62   IDGKTALISVYQTEPYNLAAYGIGPGNGWVISGAFQEVDIKTGRVLFEWKSLDHV---PL  118
             D  T  ++ Y     +L + G GP +GWV+ G   E+DI+T  VLF W +L+HV   PL
Sbjct  66   TDDGTIWVTAYNVTQADLTSVG-GPRDGWVLDGLIYEIDIETNEVLFRWSALEHVDQIPL  124

Query  119  SATLTPLQLDGVVGDGRTNGSAWDYFHINSVDKNRDGDYLVSARHTSCIYKVSGATGSII  178
              ++ PL        G +    WDYFH+NSV K  DGDYL+S R+   ++ +  + G ++
Sbjct  125  ELSVQPL-----GDFGGSEKFPWDYFHLNSVPKFGDGDYLISLRYYCSLFLIRPSNGKVM  179

Query  179  WQLGG-TQSSFQLS-GYNFSYQHDARFHEENETTTVLSFFDNASNLHQNTSSASSGKIVS  236
            WQL G T   F+L     FSYQHDARF  + E   V+S F+NA N   N  + ++G I+ 
Sbjct  180  WQLNGPTGGDFELGPNSTFSYQHDARFVNQTEDKIVISLFNNA-NTPFNGRAPTTGLILD  238

Query  237  IDHQTNTSTLTRQYHAPGNGLLSLFQGNTQVLPNKHVLIGWGNHPAISEHTEDGTAIF  294
            +D Q  T TL R+     + + S+ QG+ Q+LPN HVL+G G+   I E+  +G  + 
Sbjct  239  VDLQNKTVTLLRKLWDAEDPIHSVSQGSYQLLPNGHVLVGHGSIGRIEEYDANGKIVM  296


>CDD:399139 pfam05935, Arylsulfotrans, Arylsulfotransferase (ASST).  This 
family consists of several bacterial Arylsulfotransferase proteins. 
Arylsulfotransferase (ASST) transfers a sulfate group 
from phenolic sulfate esters to a phenolic acceptor substrate.
Length=368

 Score = 93.2 bits (232),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 108/344 (31%), Gaps = 63/344 (18%)

Query  21   GVQTEGYTRGYYTILDDAYQETTTVHSGNGMF-PGDLHELRVIDGKTALISVY-------  72
             V T+G  R Y     D+  +       NG F  G    L   D    +I  Y       
Sbjct  31   AVDTDGEVRWYLDQ--DSISDNRFKRLKNGHFLSGSGQRLYEFDLLGRVIKNYRLPGGYI  88

Query  73   -------QTEPYNLAA------YGIGPGNGWVISGAFQEVDIKTGRVLFEWKSLDHVPLS  119
                   +    NL        Y         +     E+D+KTG V+  W     +   
Sbjct  89   DFHHDIVELPNGNLLVLVAEYNYKRPGDGVKTVEDFIIEIDLKTGEVVDVWDLFKILDPY  148

Query  120  ATLTPLQLDGVVGDGRTNGSAWDYFHINSVDKN-RDGDYLVSARHTSCIYKVSGATGSII  178
                   LD   GD    G   D+ HINS+  + +D   +VS+RH S + K+   TG + 
Sbjct  149  RDALLKALDAPFGDIPGVGGGRDWAHINSIQYDEKDDSIIVSSRHQSAVVKIDYRTGKVK  208

Query  179  WQLG---GTQSSFQ-------LSGYNFSY---QHDARFHEENETTTVLSFFDN-------  218
            W LG   G     Q        S  +F +   QH A           L  FDN       
Sbjct  209  WILGDPEGWSKELQKKLLTPVDSEGDFDWTWGQHTAVLIPNGS----LMVFDNGDGRSLE  264

Query  219  ASNLHQNTSSASSGKIVSIDHQTNTSTLTRQYHAP-GNGLLSLFQGNTQVLPNK-HVLIG  276
                     + S      ID    T     +Y    G    S    + + L +K + L+ 
Sbjct  265  QPAYPSPKDNYSRAVEYKIDENNMTVEQVWEYGKERGAEWYSPITSSVEYLSDKGNYLVY  324

Query  277  WGN-------HPAISEHTE----DGTAIFFATLES--PGSQNYR  307
             G         P   E  E        +F  T+ S  P +  YR
Sbjct  325  SGGAGLDENGKPIRLEIIEIDYETKEVVFEITVTSATPNTTGYR  368



Lambda      K        H        a         alpha
   0.315    0.130    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00023035

Length=391
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372989 pfam14269, Arylsulfotran_2, Arylsulfotransferase (ASST)    171     4e-51


>CDD:372989 pfam14269, Arylsulfotran_2, Arylsulfotransferase (ASST).  
Length=301

 Score = 171 bits (436),  Expect = 4e-51, Method: Composition-based stats.
 Identities = 91/298 (31%), Positives = 138/298 (46%), Gaps = 43/298 (14%)

Query  11   EGSDHLCYHQGVQTEGYTRGYYTILDDAYQETTTVHSGNGMFPG---------DLHELRV  61
            +    + + +G    G+  G  TILD +Y+E  TV                  D HE  +
Sbjct  6    DDGPVITFWEGDGNPGFGYGTLTILDSSYEEIWTVTLPGNFVTPDHETFDSYIDHHESEI  65

Query  62   IDGKTALISVYQTEPYNLAAYGIGPGNGWVISGAFQEVDIKTGRVLFEWKSLDHV---PL  118
             D  T  ++ Y     +L + G GP +GWV+ G   E+DI+T  VLF W +L+HV   PL
Sbjct  66   TDDGTIWVTAYNVTQADLTSVG-GPRDGWVLDGLIYEIDIETNEVLFRWSALEHVDQIPL  124

Query  119  SATLTPLQLDGVVGDGRTNGSAWD----------------------SCIYKVSGATGSII  156
              ++ PL        G +    WD                        ++ +  + G ++
Sbjct  125  ELSVQPL-----GDFGGSEKFPWDYFHLNSVPKFGDGDYLISLRYYCSLFLIRPSNGKVM  179

Query  157  WQLGG-TQSSFQLS-GYNFSYQHDARFHEENETTTVLSFFDNASNLHQNTSSASSGKIVS  214
            WQL G T   F+L     FSYQHDARF  + E   V+S F+NA N   N  + ++G I+ 
Sbjct  180  WQLNGPTGGDFELGPNSTFSYQHDARFVNQTEDKIVISLFNNA-NTPFNGRAPTTGLILD  238

Query  215  IDHQTNTSTLTRQYHAPGNGLLSLFQGNTQVLPNKHVLIGWGNHPAISEHTEDGTAIF  272
            +D Q  T TL R+     + + S+ QG+ Q+LPN HVL+G G+   I E+  +G  + 
Sbjct  239  VDLQNKTVTLLRKLWDAEDPIHSVSQGSYQLLPNGHVLVGHGSIGRIEEYDANGKIVM  296



Lambda      K        H        a         alpha
   0.314    0.130    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00027450

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00023037

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00023038

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00027451

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426221 pfam01363, FYVE, FYVE zinc finger. The FYVE zinc finge...  60.5    6e-14


>CDD:426221 pfam01363, FYVE, FYVE zinc finger.  The FYVE zinc finger is named 
after four proteins that it has been found in: Fab1, YOTB/ZK632.12, 
Vac1, and EEA1. The FYVE finger has been shown 
to bind two Zn++ ions. The FYVE finger has eight potential zinc 
coordinating cysteine positions. Many members of this family 
also include two histidines in a motif R+HHC+XCG, where 
+ represents a charged residue and X any residue. We have included 
members which do not conserve these histidine residues 
but are clearly related.
Length=68

 Score = 60.5 bits (147),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 19/53 (36%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query  64   VSWQDDAGVPRCPFCQQEFTSYTFRRHHCRTCGRVVCGDPATGCSNEVPLSIT  116
              W  D+    C  C + FT +  RRHHCR CGRV C      CS++    + 
Sbjct  1    PVWVPDSSATVCMICSKPFT-FFRRRHHCRNCGRVFCSA----CSSKKISLLP  48



Lambda      K        H        a         alpha
   0.324    0.136    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00023040

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426221 pfam01363, FYVE, FYVE zinc finger. The FYVE zinc finge...  60.5    6e-14


>CDD:426221 pfam01363, FYVE, FYVE zinc finger.  The FYVE zinc finger is named 
after four proteins that it has been found in: Fab1, YOTB/ZK632.12, 
Vac1, and EEA1. The FYVE finger has been shown 
to bind two Zn++ ions. The FYVE finger has eight potential zinc 
coordinating cysteine positions. Many members of this family 
also include two histidines in a motif R+HHC+XCG, where 
+ represents a charged residue and X any residue. We have included 
members which do not conserve these histidine residues 
but are clearly related.
Length=68

 Score = 60.5 bits (147),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 19/53 (36%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query  64   VSWQDDAGVPRCPFCQQEFTSYTFRRHHCRTCGRVVCGDPATGCSNEVPLSIT  116
              W  D+    C  C + FT +  RRHHCR CGRV C      CS++    + 
Sbjct  1    PVWVPDSSATVCMICSKPFT-FFRRRHHCRNCGRVFCSA----CSSKKISLLP  48



Lambda      K        H        a         alpha
   0.324    0.136    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00027452

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426221 pfam01363, FYVE, FYVE zinc finger. The FYVE zinc finge...  60.5    6e-14


>CDD:426221 pfam01363, FYVE, FYVE zinc finger.  The FYVE zinc finger is named 
after four proteins that it has been found in: Fab1, YOTB/ZK632.12, 
Vac1, and EEA1. The FYVE finger has been shown 
to bind two Zn++ ions. The FYVE finger has eight potential zinc 
coordinating cysteine positions. Many members of this family 
also include two histidines in a motif R+HHC+XCG, where 
+ represents a charged residue and X any residue. We have included 
members which do not conserve these histidine residues 
but are clearly related.
Length=68

 Score = 60.5 bits (147),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 19/53 (36%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query  64   VSWQDDAGVPRCPFCQQEFTSYTFRRHHCRTCGRVVCGDPATGCSNEVPLSIT  116
              W  D+    C  C + FT +  RRHHCR CGRV C      CS++    + 
Sbjct  1    PVWVPDSSATVCMICSKPFT-FFRRRHHCRNCGRVFCSA----CSSKKISLLP  48



Lambda      K        H        a         alpha
   0.324    0.136    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00023039

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426221 pfam01363, FYVE, FYVE zinc finger. The FYVE zinc finge...  60.5    6e-14


>CDD:426221 pfam01363, FYVE, FYVE zinc finger.  The FYVE zinc finger is named 
after four proteins that it has been found in: Fab1, YOTB/ZK632.12, 
Vac1, and EEA1. The FYVE finger has been shown 
to bind two Zn++ ions. The FYVE finger has eight potential zinc 
coordinating cysteine positions. Many members of this family 
also include two histidines in a motif R+HHC+XCG, where 
+ represents a charged residue and X any residue. We have included 
members which do not conserve these histidine residues 
but are clearly related.
Length=68

 Score = 60.5 bits (147),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 19/53 (36%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query  64   VSWQDDAGVPRCPFCQQEFTSYTFRRHHCRTCGRVVCGDPATGCSNEVPLSIT  116
              W  D+    C  C + FT +  RRHHCR CGRV C      CS++    + 
Sbjct  1    PVWVPDSSATVCMICSKPFT-FFRRRHHCRNCGRVFCSA----CSSKKISLLP  48



Lambda      K        H        a         alpha
   0.324    0.136    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00023041

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426221 pfam01363, FYVE, FYVE zinc finger. The FYVE zinc finge...  60.5    6e-14


>CDD:426221 pfam01363, FYVE, FYVE zinc finger.  The FYVE zinc finger is named 
after four proteins that it has been found in: Fab1, YOTB/ZK632.12, 
Vac1, and EEA1. The FYVE finger has been shown 
to bind two Zn++ ions. The FYVE finger has eight potential zinc 
coordinating cysteine positions. Many members of this family 
also include two histidines in a motif R+HHC+XCG, where 
+ represents a charged residue and X any residue. We have included 
members which do not conserve these histidine residues 
but are clearly related.
Length=68

 Score = 60.5 bits (147),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 19/53 (36%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query  64   VSWQDDAGVPRCPFCQQEFTSYTFRRHHCRTCGRVVCGDPATGCSNEVPLSIT  116
              W  D+    C  C + FT +  RRHHCR CGRV C      CS++    + 
Sbjct  1    PVWVPDSSATVCMICSKPFT-FFRRRHHCRNCGRVFCSA----CSSKKISLLP  48



Lambda      K        H        a         alpha
   0.324    0.136    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00023042

Length=350


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00023043

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00023044

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00027453

Length=1168
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      61.0    4e-11


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 61.0 bits (149),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 39/140 (28%), Positives = 59/140 (42%), Gaps = 47/140 (34%)

Query  262  VWVYRQKKWQELTSDKLLPGDLMSVNRTKEDSGVACDILLIEGSAIVNEAMLSGESTPLL  321
              V R    +E+ +D+L+PGD++ +   K    V  D  ++EGSA V+E++L+GES P+ 
Sbjct  7    ATVLRDGTEEEVPADELVPGDIVLL---KPGERVPADGRIVEGSASVDESLLTGESLPVE  63

Query  322  KESIQLRPGDDLIDPDGLDKNAFVHGGTKVLQITHHNSNGEDGSEKARKLSSGVPLPPDN  381
            K+      GD             V+ GT V+           GS                
Sbjct  64   KK-----KGD------------MVYSGTVVVS----------GS----------------  80

Query  382  GAVGVVVKTGFETSQGSLVR  401
             A  VV  TG +T  G + R
Sbjct  81   -AKAVVTATGEDTELGRIAR  99



Lambda      K        H        a         alpha
   0.320    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1495370898


Query= TCONS_00023045

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00027454

Length=882
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:434700 pfam15407, Spo7_2_N, Sporulation protein family 7. Spo...   99     5e-26


>CDD:434700 pfam15407, Spo7_2_N, Sporulation protein family 7.  Spo7_2 constitutes 
a different set of fungal and related species from 
those found in Spo7. This domain is found in general at the 
N-terminus. In many members the domain is associated with a 
Pleckstrin-homology - PH - domain.
Length=64

 Score =  99 bits (250),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 40/60 (67%), Gaps = 0/60 (0%)

Query  28  HGLEPWSFTAERLRYASGYHLHMTSRRFFIGPIPEGWLQHHRKHWYKTRLKFHNYTSRAV  87
            G+   SFTA RL YAS   L +TSRR F+GPIPE WLQ HRK WYK+ LK  NY SR  
Sbjct  2   FGIPRSSFTAFRLSYASPEELSLTSRRVFLGPIPELWLQEHRKSWYKSLLKLSNYKSRKR  61



Lambda      K        H        a         alpha
   0.316    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1129749518


Query= TCONS_00023046

Length=1064
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:434699 pfam15404, PH_4, Pleckstrin homology domain. This Plec...  230     2e-70
CDD:434700 pfam15407, Spo7_2_N, Sporulation protein family 7. Spo...  98.8    1e-25


>CDD:434699 pfam15404, PH_4, Pleckstrin homology domain.  This Pleckstrin 
homology domain is found in some fungal species.
Length=184

 Score = 230 bits (589),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 77/186 (41%), Positives = 110/186 (59%), Gaps = 20/186 (11%)

Query  878   MSGHLFLKPRRHSTFKRCDVILAGGKLLIFHSSLRKRTGVEIPHVHQSLENTLDLEDCYI  937
             MSG+L+ KP++HSTFK+  V+L  G LL+F+   R +TG   P +H     T+ L DCY+
Sbjct  1     MSGYLYQKPKKHSTFKKYFVVLIPGFLLLFNLFKRSKTGFAKPTIHYEHYLTIPLSDCYV  60

Query  938   YSGLMTESDLLYANRTFDSNHPGHHTLPRIYLSSDVYTTCDEDTAITFVVWQPLRKNYFR  997
             YSGL+TE DLLY N+TFD N+PG H+LPR+Y  SD + + +E+++  F +W   ++   R
Sbjct  61    YSGLITELDLLYRNQTFDPNNPGSHSLPRVY--SDGWKSSEEESSRCFTLWFGKKRAISR  118

Query  998   AEELSKKGKTKQ------------------KLRQVSTLGVPGRTVVFKARSRIERDRWVM  1039
                  +K                        L+ VS LGV G+++VF ARSR ERD WV+
Sbjct  119   YSLSKRKQTLSPYSDPASSSAAENNEKNPGLLKMVSRLGVTGKSMVFMARSRQERDLWVL  178

Query  1040  SISSEI  1045
             +I  EI
Sbjct  179   AIQYEI  184


>CDD:434700 pfam15407, Spo7_2_N, Sporulation protein family 7.  Spo7_2 constitutes 
a different set of fungal and related species from 
those found in Spo7. This domain is found in general at the 
N-terminus. In many members the domain is associated with a 
Pleckstrin-homology - PH - domain.
Length=64

 Score = 98.8 bits (247),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 40/60 (67%), Gaps = 0/60 (0%)

Query  28  HGLEPWSFTAERLRYASGYHLHMTSRRFFIGPIPEGWLQHHRKHWYKTRLKFHNYTSRAV  87
            G+   SFTA RL YAS   L +TSRR F+GPIPE WLQ HRK WYK+ LK  NY SR  
Sbjct  2   FGIPRSSFTAFRLSYASPEELSLTSRRVFLGPIPELWLQEHRKSWYKSLLKLSNYKSRKR  61



Lambda      K        H        a         alpha
   0.316    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1370567968


Query= TCONS_00023047

Length=1064
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:434699 pfam15404, PH_4, Pleckstrin homology domain. This Plec...  230     2e-70
CDD:434700 pfam15407, Spo7_2_N, Sporulation protein family 7. Spo...  98.8    1e-25


>CDD:434699 pfam15404, PH_4, Pleckstrin homology domain.  This Pleckstrin 
homology domain is found in some fungal species.
Length=184

 Score = 230 bits (589),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 77/186 (41%), Positives = 110/186 (59%), Gaps = 20/186 (11%)

Query  878   MSGHLFLKPRRHSTFKRCDVILAGGKLLIFHSSLRKRTGVEIPHVHQSLENTLDLEDCYI  937
             MSG+L+ KP++HSTFK+  V+L  G LL+F+   R +TG   P +H     T+ L DCY+
Sbjct  1     MSGYLYQKPKKHSTFKKYFVVLIPGFLLLFNLFKRSKTGFAKPTIHYEHYLTIPLSDCYV  60

Query  938   YSGLMTESDLLYANRTFDSNHPGHHTLPRIYLSSDVYTTCDEDTAITFVVWQPLRKNYFR  997
             YSGL+TE DLLY N+TFD N+PG H+LPR+Y  SD + + +E+++  F +W   ++   R
Sbjct  61    YSGLITELDLLYRNQTFDPNNPGSHSLPRVY--SDGWKSSEEESSRCFTLWFGKKRAISR  118

Query  998   AEELSKKGKTKQ------------------KLRQVSTLGVPGRTVVFKARSRIERDRWVM  1039
                  +K                        L+ VS LGV G+++VF ARSR ERD WV+
Sbjct  119   YSLSKRKQTLSPYSDPASSSAAENNEKNPGLLKMVSRLGVTGKSMVFMARSRQERDLWVL  178

Query  1040  SISSEI  1045
             +I  EI
Sbjct  179   AIQYEI  184


>CDD:434700 pfam15407, Spo7_2_N, Sporulation protein family 7.  Spo7_2 constitutes 
a different set of fungal and related species from 
those found in Spo7. This domain is found in general at the 
N-terminus. In many members the domain is associated with a 
Pleckstrin-homology - PH - domain.
Length=64

 Score = 98.8 bits (247),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 40/60 (67%), Gaps = 0/60 (0%)

Query  28  HGLEPWSFTAERLRYASGYHLHMTSRRFFIGPIPEGWLQHHRKHWYKTRLKFHNYTSRAV  87
            G+   SFTA RL YAS   L +TSRR F+GPIPE WLQ HRK WYK+ LK  NY SR  
Sbjct  2   FGIPRSSFTAFRLSYASPEELSLTSRRVFLGPIPELWLQEHRKSWYKSLLKLSNYKSRKR  61



Lambda      K        H        a         alpha
   0.316    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0818    0.140     1.90     42.6     43.6 

Effective search space used: 1370567968


Query= TCONS_00023048

Length=1040
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:434699 pfam15404, PH_4, Pleckstrin homology domain. This Plec...  230     3e-70
CDD:434700 pfam15407, Spo7_2_N, Sporulation protein family 7. Spo...  79.9    6e-19


>CDD:434699 pfam15404, PH_4, Pleckstrin homology domain.  This Pleckstrin 
homology domain is found in some fungal species.
Length=184

 Score = 230 bits (588),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 77/186 (41%), Positives = 110/186 (59%), Gaps = 20/186 (11%)

Query  854   MSGHLFLKPRRHSTFKRCDVILAGGKLLIFHSSLRKRTGVEIPHVHQSLENTLDLEDCYI  913
             MSG+L+ KP++HSTFK+  V+L  G LL+F+   R +TG   P +H     T+ L DCY+
Sbjct  1     MSGYLYQKPKKHSTFKKYFVVLIPGFLLLFNLFKRSKTGFAKPTIHYEHYLTIPLSDCYV  60

Query  914   YSGLMTESDLLYANRTFDSNHPGHHTLPRIYLSSDVYTTCDEDTAITFVVWQPLRKNYFR  973
             YSGL+TE DLLY N+TFD N+PG H+LPR+Y  SD + + +E+++  F +W   ++   R
Sbjct  61    YSGLITELDLLYRNQTFDPNNPGSHSLPRVY--SDGWKSSEEESSRCFTLWFGKKRAISR  118

Query  974   AEELSKKGKTKQ------------------KLRQVSTLGVPGRTVVFKARSRIERDRWVM  1015
                  +K                        L+ VS LGV G+++VF ARSR ERD WV+
Sbjct  119   YSLSKRKQTLSPYSDPASSSAAENNEKNPGLLKMVSRLGVTGKSMVFMARSRQERDLWVL  178

Query  1016  SISSEI  1021
             +I  EI
Sbjct  179   AIQYEI  184


>CDD:434700 pfam15407, Spo7_2_N, Sporulation protein family 7.  Spo7_2 constitutes 
a different set of fungal and related species from 
those found in Spo7. This domain is found in general at the 
N-terminus. In many members the domain is associated with a 
Pleckstrin-homology - PH - domain.
Length=64

 Score = 79.9 bits (198),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 29/47 (62%), Positives = 32/47 (68%), Gaps = 0/47 (0%)

Query  17  RYASGYHLHMTSRRFFIGPIPEGWLQHHRKHWYKTRLKFHNYTSRAV  63
            YAS   L +TSRR F+GPIPE WLQ HRK WYK+ LK  NY SR  
Sbjct  15  SYASPEELSLTSRRVFLGPIPELWLQEHRKSWYKSLLKLSNYKSRKR  61



Lambda      K        H        a         alpha
   0.317    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1336586944


Query= TCONS_00027455

Length=1040
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:434699 pfam15404, PH_4, Pleckstrin homology domain. This Plec...  230     3e-70
CDD:434700 pfam15407, Spo7_2_N, Sporulation protein family 7. Spo...  79.9    6e-19


>CDD:434699 pfam15404, PH_4, Pleckstrin homology domain.  This Pleckstrin 
homology domain is found in some fungal species.
Length=184

 Score = 230 bits (588),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 77/186 (41%), Positives = 110/186 (59%), Gaps = 20/186 (11%)

Query  854   MSGHLFLKPRRHSTFKRCDVILAGGKLLIFHSSLRKRTGVEIPHVHQSLENTLDLEDCYI  913
             MSG+L+ KP++HSTFK+  V+L  G LL+F+   R +TG   P +H     T+ L DCY+
Sbjct  1     MSGYLYQKPKKHSTFKKYFVVLIPGFLLLFNLFKRSKTGFAKPTIHYEHYLTIPLSDCYV  60

Query  914   YSGLMTESDLLYANRTFDSNHPGHHTLPRIYLSSDVYTTCDEDTAITFVVWQPLRKNYFR  973
             YSGL+TE DLLY N+TFD N+PG H+LPR+Y  SD + + +E+++  F +W   ++   R
Sbjct  61    YSGLITELDLLYRNQTFDPNNPGSHSLPRVY--SDGWKSSEEESSRCFTLWFGKKRAISR  118

Query  974   AEELSKKGKTKQ------------------KLRQVSTLGVPGRTVVFKARSRIERDRWVM  1015
                  +K                        L+ VS LGV G+++VF ARSR ERD WV+
Sbjct  119   YSLSKRKQTLSPYSDPASSSAAENNEKNPGLLKMVSRLGVTGKSMVFMARSRQERDLWVL  178

Query  1016  SISSEI  1021
             +I  EI
Sbjct  179   AIQYEI  184


>CDD:434700 pfam15407, Spo7_2_N, Sporulation protein family 7.  Spo7_2 constitutes 
a different set of fungal and related species from 
those found in Spo7. This domain is found in general at the 
N-terminus. In many members the domain is associated with a 
Pleckstrin-homology - PH - domain.
Length=64

 Score = 79.9 bits (198),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 29/47 (62%), Positives = 32/47 (68%), Gaps = 0/47 (0%)

Query  17  RYASGYHLHMTSRRFFIGPIPEGWLQHHRKHWYKTRLKFHNYTSRAV  63
            YAS   L +TSRR F+GPIPE WLQ HRK WYK+ LK  NY SR  
Sbjct  15  SYASPEELSLTSRRVFLGPIPELWLQEHRKSWYKSLLKLSNYKSRKR  61



Lambda      K        H        a         alpha
   0.317    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1336586944


Query= TCONS_00023049

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460286 pfam01661, Macro, Macro domain. This domain is an ADP-...  181     9e-58


>CDD:460286 pfam01661, Macro, Macro domain.  This domain is an ADP-ribose 
binding module. It is found in a number of otherwise unrelated 
proteins. It is found at the C-terminus of the macro-H2A 
histone protein. This domain is found in the non-structural 
proteins of several types of ssRNA viruses such as NSP3 from 
alphaviruses. This domain is also found on its own in a family 
of proteins from bacteria, archaebacteria and eukaryotes.
Length=116

 Score = 181 bits (461),  Expect = 9e-58, Method: Composition-based stats.
 Identities = 72/116 (62%), Positives = 80/116 (69%), Gaps = 5/116 (4%)

Query  58   VNAANESLLGGGGVDGAIHRAAGPDLLRECRTLK--GCRTGDAKITSAYELPCKKVIHTV  115
            VNAAN  LLGGGGV GAIHRAAGP+LL ECR LK  GC TG+A +T    LP K VIHTV
Sbjct  1    VNAANSRLLGGGGVAGAIHRAAGPELLEECRELKKGGCPTGEAVVTPGGNLPAKYVIHTV  60

Query  116  GPIYHFELRKGDDRPEMLLRSCYRRSLELAVENNMKSIAFAAISTGVYGYPSSEAA  171
            GP +      G    E LL SCYR +L LA E  +KSIAF AISTG+YG+P  EAA
Sbjct  61   GPTWR---HGGSHGEEELLESCYRNALALAEELGIKSIAFPAISTGIYGFPWEEAA  113



Lambda      K        H        a         alpha
   0.313    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00023052

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00023051

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00023050

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00027456

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00027457

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00027458

Length=328


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00023053

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425605 pfam00320, GATA, GATA zinc finger. This domain uses fo...  66.6    7e-15


>CDD:425605 pfam00320, GATA, GATA zinc finger.  This domain uses four cysteine 
residues to coordinate a zinc ion. This domain binds to 
DNA. Two GATA zinc fingers are found in the GATA transcription 
factors. However there are several proteins which only 
contain a single copy of the domain.
Length=36

 Score = 66.6 bits (163),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 22/36 (61%), Positives = 26/36 (72%), Gaps = 0/36 (0%)

Query  431  CHSCNRAETPEWRRGPDGARTLCNACGLHYAKLTRK  466
            C +C   +TP WRRGP+G RTLCNACGL+Y K   K
Sbjct  1    CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKKKGLK  36



Lambda      K        H        a         alpha
   0.310    0.127    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00027460

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425605 pfam00320, GATA, GATA zinc finger. This domain uses fo...  66.6    7e-15


>CDD:425605 pfam00320, GATA, GATA zinc finger.  This domain uses four cysteine 
residues to coordinate a zinc ion. This domain binds to 
DNA. Two GATA zinc fingers are found in the GATA transcription 
factors. However there are several proteins which only 
contain a single copy of the domain.
Length=36

 Score = 66.6 bits (163),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 22/36 (61%), Positives = 26/36 (72%), Gaps = 0/36 (0%)

Query  431  CHSCNRAETPEWRRGPDGARTLCNACGLHYAKLTRK  466
            C +C   +TP WRRGP+G RTLCNACGL+Y K   K
Sbjct  1    CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKKKGLK  36



Lambda      K        H        a         alpha
   0.310    0.127    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00027459

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425605 pfam00320, GATA, GATA zinc finger. This domain uses fo...  66.6    7e-15


>CDD:425605 pfam00320, GATA, GATA zinc finger.  This domain uses four cysteine 
residues to coordinate a zinc ion. This domain binds to 
DNA. Two GATA zinc fingers are found in the GATA transcription 
factors. However there are several proteins which only 
contain a single copy of the domain.
Length=36

 Score = 66.6 bits (163),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 22/36 (61%), Positives = 26/36 (72%), Gaps = 0/36 (0%)

Query  431  CHSCNRAETPEWRRGPDGARTLCNACGLHYAKLTRK  466
            C +C   +TP WRRGP+G RTLCNACGL+Y K   K
Sbjct  1    CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKKKGLK  36



Lambda      K        H        a         alpha
   0.310    0.127    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00023055

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00027461

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00027462

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00027463

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00027464

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00023056

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460796 pfam03074, GCS, Glutamate-cysteine ligase. This family...  462     8e-166


>CDD:460796 pfam03074, GCS, Glutamate-cysteine ligase.  This family represents 
the catalytic subunit of glutamate-cysteine ligase (E.C. 
6.3.2.2), also known as gamma-glutamylcysteine synthetase 
(GCS). This enzyme catalyzes the rate limiting step in the 
biosynthesis of glutathione. The eukaryotic enzyme is a dimer 
of a heavy chain and a light chain with all the catalytic 
activity exhibited by the heavy chain (this family).
Length=369

 Score = 462 bits (1192),  Expect = 8e-166, Method: Composition-based stats.
 Identities = 163/265 (62%), Positives = 195/265 (74%), Gaps = 24/265 (9%)

Query  1    MDDLLATHFAHLFIRDPLVIFSEDLDELDLNKADHFENLQSTNWQHMRFKPPPPDKADIG  60
            +D+LLA HFAHLFIRDPLVIFSE +++ D    DHFEN+QSTNWQ MRFKPPPP+   IG
Sbjct  129  VDELLAKHFAHLFIRDPLVIFSEKIEQDDETSTDHFENIQSTNWQTMRFKPPPPNSDKIG  188

Query  61   WRVEFRSMEIQMTDFENAAFSIFIVLVTRAILSFDLNFYIPIQRTTENMETAHARNAVLD  120
            WRVEFR ME+Q+TDFENAA+S+FIVL+TRAILSF LNFYIPI +  ENME AH R+AVL+
Sbjct  189  WRVEFRPMEVQLTDFENAAYSVFIVLLTRAILSFKLNFYIPISKVDENMERAHKRDAVLN  248

Query  121  QKFYFRKDPFSRRVPRASHRSTSASEASSATSSASNTPPSSPPLGPVDLEYDLMTIDEIV  180
            +KFYFRK+ FS                       + +P        V+ EY+LMTIDEI+
Sbjct  249  EKFYFRKNIFS-----------------------NGSPAEDGCSSSVEDEYELMTIDEII  285

Query  181  NGSADGSFPGLIPLVESYLNSVNVDVETRCSLATYLDLIRKRANGTLWTGARWIREFVAS  240
            NG  +G FPGLIPL+ SYL+SVNVDV+TRC L  YL LI KRA+G L T ARWIR FV +
Sbjct  286  NGK-EGGFPGLIPLIRSYLDSVNVDVDTRCRLYQYLKLISKRASGELPTAARWIRNFVLN  344

Query  241  HPSYKQDSVVSEEICYDLVKAVEEM  265
            HP YKQDSVVS+EI YDL+KA + +
Sbjct  345  HPDYKQDSVVSDEINYDLLKACDRI  369



Lambda      K        H        a         alpha
   0.319    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00023058

Length=697


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 890773160


Query= TCONS_00027465

Length=868
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter. T...  250     8e-78


>CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter.  ThrE is 
a family of bacterial and Archaeal proteins that catalyze the 
export of L-threonine from the cell. UniProtKB:Q79VD1 has 
been characterized as being necessary for this export. The 
domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent 
efflux of threonine and serine.
Length=241

 Score = 250 bits (641),  Expect = 8e-78, Method: Composition-based stats.
 Identities = 89/248 (36%), Positives = 138/248 (56%), Gaps = 8/248 (3%)

Query  419  RYLIRLCRALMKYGAPTHRLEEYMTMTARVLEI-DGQFLYIPGCMIISFDDASTHTTEVK  477
             + +R  R L++ GA T+R+E+ M   AR L I + +    P  +IISFDD     T V+
Sbjct  1    DFALRAGRILLESGAETYRVEDTMNRIARALGIDECEVFVTPTGIIISFDDDDESITTVR  60

Query  478  VVRSAQGVDLGKLSDVHIVYKEVIHDVIGVEEAIQRLEEIMKKKNKYSVWMLILVHGFAS  537
             VRS +G++L KLS+V+ + + ++H  I +EEA +RL+EI +   +Y  W+++L  G AS
Sbjct  61   RVRS-RGINLEKLSEVNELSRRIVHGEISLEEAEKRLDEIERSPPRYPRWLVVLAAGLAS  119

Query  538  ASVGPFAFNARPIDLPIAFLLGCLLGILQLVLSPRSNLYSNVFEISAAVMTSFLARAFGS  597
            A+     F    ID  +AFL G L G+L+LVL  R  L S  FE  AA + S LA    S
Sbjct  120  AAFALL-FGGDWIDFLVAFLAGGLGGLLRLVL-NRRGLNSFFFEAVAAFVASLLALLAVS  177

Query  598  IRYEGERLFCFSALAQSSIALILPGYLVLCASLELQSRSIVAGSVRMVYAIIYSMFLGFG  657
            +           A+   SI L++PG  +  A  +L +  +V+G  R+V AI+ ++ + FG
Sbjct  178  LGLGIN----PDAIIIGSIMLLVPGLPLTNAVRDLIAGDLVSGLARLVEAILIALAIAFG  233

Query  658  ITIGTAVY  665
            I +  A+ 
Sbjct  234  IALALALL  241



Lambda      K        H        a         alpha
   0.318    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1109652322


Query= TCONS_00023059

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter. T...  175     3e-53


>CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter.  ThrE is 
a family of bacterial and Archaeal proteins that catalyze the 
export of L-threonine from the cell. UniProtKB:Q79VD1 has 
been characterized as being necessary for this export. The 
domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent 
efflux of threonine and serine.
Length=241

 Score = 175 bits (447),  Expect = 3e-53, Method: Composition-based stats.
 Identities = 75/204 (37%), Positives = 115/204 (56%), Gaps = 7/204 (3%)

Query  1    MIISFDDASTHTTEVKVVRSAQGVDLGKLSDVHIVYKEVIHDVIGVEEAIQRLEEIMKKK  60
            +IISFDD     T V+ VRS +G++L KLS+V+ + + ++H  I +EEA +RL+EI +  
Sbjct  45   IIISFDDDDESITTVRRVRS-RGINLEKLSEVNELSRRIVHGEISLEEAEKRLDEIERSP  103

Query  61   NKYSVWMLILVHGFASASVGPFAFNARPIDLPIAFLLGCLLGILQLVLSPRSNLYSNVFE  120
             +Y  W+++L  G ASA+     F    ID  +AFL G L G+L+LVL  R  L S  FE
Sbjct  104  PRYPRWLVVLAAGLASAAFALL-FGGDWIDFLVAFLAGGLGGLLRLVL-NRRGLNSFFFE  161

Query  121  ISAAVMTSFLARAFGSIRYEGERLFCFSALAQSSIALILPGYLVLCASLELQSRSIVAGS  180
              AA + S LA    S+           A+   SI L++PG  +  A  +L +  +V+G 
Sbjct  162  AVAAFVASLLALLAVSLGLGIN----PDAIIIGSIMLLVPGLPLTNAVRDLIAGDLVSGL  217

Query  181  VRMVYAIIYSMFLGFGITIGTAVY  204
             R+V AI+ ++ + FGI +  A+ 
Sbjct  218  ARLVEAILIALAIAFGIALALALL  241



Lambda      K        H        a         alpha
   0.326    0.140    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00023060

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00023061

Length=119
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  65.0    1e-14


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 65.0 bits (159),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 43/77 (56%), Gaps = 6/77 (8%)

Query  41   YHIVGFISSGTYGRVYKAIGKDGRKGEYAIKKFKPDKEGEIIQYTGLSQSAIREMALCSE  100
            Y ++  + SG++G VYKA  +D  K   AIKK K +K  +        ++ +RE+ +  +
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGK-IVAIKKIKKEKIKKKKD-----KNILREIKILKK  54

Query  101  LDHPNVVQLAEIILEDK  117
            L+HPN+V+L +   +  
Sbjct  55   LNHPNIVRLYDAFEDKD  71



Lambda      K        H        a         alpha
   0.320    0.140    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00027466

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  75.7    2e-18


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 75.7 bits (187),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 27/85 (32%), Positives = 49/85 (58%), Gaps = 6/85 (7%)

Query  41   YHIVGFISSGTYGRVYKAIGKDGRKGEYAIKKFKPDKEGEIIQYTGLSQSAIREMALCSE  100
            Y ++  + SG++G VYKA  +D  K   AIKK K +K  +        ++ +RE+ +  +
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGK-IVAIKKIKKEKIKKKKD-----KNILREIKILKK  54

Query  101  LDHPNVVQLAEIILEDKCIFMVFEY  125
            L+HPN+V+L +   +   +++V EY
Sbjct  55   LNHPNIVRLYDAFEDKDNLYLVLEY  79



Lambda      K        H        a         alpha
   0.321    0.141    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00023062

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  116     2e-31
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            100     7e-25


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 116 bits (294),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 63/281 (22%), Positives = 102/281 (36%), Gaps = 107/281 (38%)

Query  45   QSAIREMALCSELDHPNVVQLAEIILEDKCIFMVFEYTEHDLL-QIIHHHTQPQRHAIPA  103
            ++ +RE+ +  +L+HPN+V+L +   +   +++V EY E   L  ++         A   
Sbjct  43   KNILREIKILKKLNHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKG-----AFSE  97

Query  104  PMIKSILFQLLNGLLYLHTNWVLHRDLKPANILVTSSGAVRIGDLGLARLFYKPLNSLYS  163
               K I+ Q+L GL                                      +  +SL +
Sbjct  98   REAKFIMKQILEGL--------------------------------------ESGSSLTT  119

Query  164  GDKVVVTIWYRAPELLMGSRHYTPAVDLWAVGCIFAELLSLRPIFKGEEAKMDSKKTVPF  223
                V T WY APE+L G   Y P VD+W++GCI  ELL+ +P F             P 
Sbjct  120  ---FVGTPWYMAPEVL-GGNPYGPKVDVWSLGCILYELLTGKPPF-------------PG  162

Query  224  QRNQMMKIIDIMGLPRKETWPGLVSMPEFSQLQSLAMSRGYINRQCNLEGWYQSCLKNNG  283
                 +  + I         P  +S                           +       
Sbjct  163  INGNEIYELIIDQPYAFPELPSNLS---------------------------EEAK----  191

Query  284  YSPGSAAGTPGAEGFDLLSRLLEYDPTKRISAREALEHPYF  324
                           DLL +LL+ DP+KR++A +AL+HP+F
Sbjct  192  ---------------DLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 100 bits (251),  Expect = 7e-25, Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 9/150 (6%)

Query  48   IREMALCSELDHPNVVQLAEIILEDKCIFMVFEYTEH-DLLQIIHHHTQPQRHAIPAPMI  106
            + E ++  +LDHPN+V+L  +  + + +++V EY    DLL  +  H +     +    +
Sbjct  49   LEEASIMKKLDHPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRK----LTLKDL  104

Query  107  KSILFQLLNGLLYLHTNWVLHRDLKPANILVTSSGAVRIGDLGLARLFYKPLNSLYSGDK  166
             S+  Q+  G+ YL +   +HRDL   N LV+ +  V+I D GL+R  Y   +       
Sbjct  105  LSMALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDD-DYYRKRGG  163

Query  167  VVVTI-WYRAPELLMGSRHYTPAVDLWAVG  195
              + I W  APE L     +T   D+W+ G
Sbjct  164  GKLPIKWM-APESLK-DGKFTSKSDVWSFG  191



Lambda      K        H        a         alpha
   0.320    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00023063

Length=896
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459830 pfam00493, MCM, MCM2/3/5 family                            411     4e-139
CDD:465381 pfam17207, MCM_OB, MCM OB domain. This family contains...  173     3e-51 
CDD:403724 pfam12619, MCM2_N, Mini-chromosome maintenance protein...  147     1e-41 
CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain. This entry rep...  115     3e-31 
CDD:464206 pfam14551, MCM_N, MCM N-terminal domain. This family c...  75.0    5e-17 


>CDD:459830 pfam00493, MCM, MCM2/3/5 family.  
Length=224

 Score = 411 bits (1058),  Expect = 4e-139, Method: Composition-based stats.
 Identities = 139/224 (62%), Positives = 175/224 (78%), Gaps = 0/224 (0%)

Query  473  DERQIRALSRDPDIVDKIVRSIAPSIYGHQDVKTAVALSLFGGVSKEAQGKMAIRGDINV  532
            DE +I+ L++ PDI DK+  SIAPSIYGH+DVK A+ L LFGGV K       +RGDINV
Sbjct  1    DEEEIKELAKRPDIYDKLADSIAPSIYGHEDVKKAILLQLFGGVKKILPDGTRLRGDINV  60

Query  533  LLLGDPGTAKSQVLKYVEKTAHRAVFATGQGASAVGLTASVRRDPLTSEWTLEGGALVLA  592
            LL+GDPGTAKSQ+LKYVEK A RAV+ +G+G+SA GLTA+V RDP+T E+ LE GALVLA
Sbjct  61   LLVGDPGTAKSQLLKYVEKIAPRAVYTSGKGSSAAGLTAAVVRDPVTGEFVLEAGALVLA  120

Query  593  DRGTCLIDEFDKMNDQDRTSIHEAMEQQTISISKAGIVTTLQARCAVVAAANPIGGRYNS  652
            D G C IDEFDKMND+DR ++HEAMEQQTISI+KAGIV TL ARC+++AAANPI GRY+ 
Sbjct  121  DGGVCCIDEFDKMNDEDRVALHEAMEQQTISIAKAGIVATLNARCSILAAANPIFGRYDP  180

Query  653  TIPFSQNVELTEPILSRFDILCVVRDTVDPNEDERLANFVIESH  696
                ++N+ L  P+LSRFD++ V+ D  D  +DERLA  +++ H
Sbjct  181  KKSIAENINLPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH  224


>CDD:465381 pfam17207, MCM_OB, MCM OB domain.  This family contains an OB-fold 
found within MCM proteins. This domain contains an insertion 
at the zinc binding motif.
Length=126

 Score = 173 bits (442),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 61/134 (46%), Positives = 82/134 (61%), Gaps = 14/134 (10%)

Query  307  LRQLRQQHLNCLVRVSGVVTRRTGVFPQLKYVMFICQKCNITLGPFQQEASAEVKI---S  363
            +R LR +H+  LV VSG+VTR + V P+LK   F C+KC  T+G         VKI   +
Sbjct  2    IRDLRSEHIGKLVSVSGIVTRTSEVRPKLKKATFTCRKCGHTVG---------VKITEPT  52

Query  364  YCQN--CQSKGPFTINSEKTVYRNYQKLTLQESPGSVPAGRLPRQREVVLLADLIDSAKP  421
             C N  C +K PF +  EK+ + ++QK+ +QESP  VPAG LPR  +V+L  DL+D  KP
Sbjct  53   KCPNPECGNKDPFKLVHEKSKFVDFQKIKIQESPEEVPAGELPRSLDVILDDDLVDRVKP  112

Query  422  GDEIEVTGIYRNSY  435
            GD + VTGIYR   
Sbjct  113  GDRVTVTGIYRVVP  126


>CDD:403724 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2.  This 
domain family is found in eukaryotes, and is typically between 
138 and 153 amino acids in length. The family is found 
in association with pfam00493. Mini-chromosome maintenance 
(MCM) proteins are essential for DNA replication. These proteins 
use ATPase activity to perform this function.
Length=148

 Score = 147 bits (373),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 78/140 (56%), Positives = 95/140 (68%), Gaps = 13/140 (9%)

Query  67   DIDDIDEMAEDEDGIDLFGDNFERDYR-DVGNDRYEGEYIDDDGDHEELDIATRRQLEAR  125
            DIDD+D   E+EDG DLFGDN E DYR +   DRY+ + IDD+GD+EE+D A RR+ EA+
Sbjct  11   DIDDLDPDEEEEDGEDLFGDNMEDDYRQNPELDRYDLDDIDDEGDYEEMDAAERRRAEAQ  70

Query  126  LNRR-DRELERRRRMPAAFLQDDDE-----GDMDLTRQPRRRRHHYDEDREDIEMGDDAM  179
            LNRR       RRR PAAFLQDDD+     GD  L  Q RRRR HYDED+++    D+ +
Sbjct  71   LNRRDRELGAARRRRPAAFLQDDDDEDDLDGDYGLPIQRRRRRRHYDEDQDE--DMDEDI  128

Query  180  ----EELSLEELADVKAANI  195
                EELSLE LADVKA +I
Sbjct  129  DPFEEELSLESLADVKADSI  148


>CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain.  This entry represents 
the AAA-lid domain found in MCM proteins.
Length=86

 Score = 115 bits (290),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 40/86 (47%), Positives = 60/86 (70%), Gaps = 1/86 (1%)

Query  762  ELLRKYILYAREKCHPKLYQIDQDKVARLFADMRRESL-ATGAYPITVRHLEAIMRIAEA  820
            ELLRKYI YAREK  PKL +  ++K+   + ++R+ES  +  + PITVR LE+++R++EA
Sbjct  1    ELLRKYIAYAREKIKPKLSEEAREKLVDAYVELRKESTGSGSSIPITVRQLESLIRLSEA  60

Query  821  FCKMRLSEYCSAQDIDRAIAVTVESF  846
              KMRLSE  + +D++ AI +  ES 
Sbjct  61   HAKMRLSEIVTEEDVEEAIRLLKESL  86


>CDD:464206 pfam14551, MCM_N, MCM N-terminal domain.  This family contains 
the N-terminal domain of MCM proteins.
Length=95

 Score = 75.0 bits (185),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 30/94 (32%), Positives = 43/94 (46%), Gaps = 3/94 (3%)

Query  210  REFKAFLTEFT-DQAGQSVYGHKIKTLGEVNSASLEVSYVHLSSTKAALSYFLANEPTEV  268
            R+FK FL EF  D  G+  Y  +++ + E    SLEV    L      L+  L   P E 
Sbjct  2    RKFKDFLEEFREDGDGEFKYRDQLREMIEREQRSLEVDLDDLREFDPDLAEALLENPYEY  61

Query  269  LKVFDQVALDV--TLFHYPQYQDIHKEIHVRISD  300
            L +F++   +V   L   P Y +  KE  VR  +
Sbjct  62   LPLFEEALKEVVKELSEDPDYAEEEKEFQVRFYN  95



Lambda      K        H        a         alpha
   0.317    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1149846714


Query= TCONS_00023064

Length=864
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459830 pfam00493, MCM, MCM2/3/5 family                            409     4e-139
CDD:465381 pfam17207, MCM_OB, MCM OB domain. This family contains...  173     2e-51 
CDD:403724 pfam12619, MCM2_N, Mini-chromosome maintenance protein...  145     4e-41 
CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain. This entry rep...  115     3e-31 
CDD:464206 pfam14551, MCM_N, MCM N-terminal domain. This family c...  74.6    7e-17 


>CDD:459830 pfam00493, MCM, MCM2/3/5 family.  
Length=224

 Score = 409 bits (1055),  Expect = 4e-139, Method: Composition-based stats.
 Identities = 139/224 (62%), Positives = 175/224 (78%), Gaps = 0/224 (0%)

Query  473  DERQIRALSRDPDIVDKIVRSIAPSIYGHQDVKTAVALSLFGGVSKEAQGKMAIRGDINV  532
            DE +I+ L++ PDI DK+  SIAPSIYGH+DVK A+ L LFGGV K       +RGDINV
Sbjct  1    DEEEIKELAKRPDIYDKLADSIAPSIYGHEDVKKAILLQLFGGVKKILPDGTRLRGDINV  60

Query  533  LLLGDPGTAKSQVLKYVEKTAHRAVFATGQGASAVGLTASVRRDPLTSEWTLEGGALVLA  592
            LL+GDPGTAKSQ+LKYVEK A RAV+ +G+G+SA GLTA+V RDP+T E+ LE GALVLA
Sbjct  61   LLVGDPGTAKSQLLKYVEKIAPRAVYTSGKGSSAAGLTAAVVRDPVTGEFVLEAGALVLA  120

Query  593  DRGTCLIDEFDKMNDQDRTSIHEAMEQQTISISKAGIVTTLQARCAVVAAANPIGGRYNS  652
            D G C IDEFDKMND+DR ++HEAMEQQTISI+KAGIV TL ARC+++AAANPI GRY+ 
Sbjct  121  DGGVCCIDEFDKMNDEDRVALHEAMEQQTISIAKAGIVATLNARCSILAAANPIFGRYDP  180

Query  653  TIPFSQNVELTEPILSRFDILCVVRDTVDPNEDERLANFVIESH  696
                ++N+ L  P+LSRFD++ V+ D  D  +DERLA  +++ H
Sbjct  181  KKSIAENINLPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH  224


>CDD:465381 pfam17207, MCM_OB, MCM OB domain.  This family contains an OB-fold 
found within MCM proteins. This domain contains an insertion 
at the zinc binding motif.
Length=126

 Score = 173 bits (442),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 61/134 (46%), Positives = 82/134 (61%), Gaps = 14/134 (10%)

Query  307  LRQLRQQHLNCLVRVSGVVTRRTGVFPQLKYVMFICQKCNITLGPFQQEASAEVKI---S  363
            +R LR +H+  LV VSG+VTR + V P+LK   F C+KC  T+G         VKI   +
Sbjct  2    IRDLRSEHIGKLVSVSGIVTRTSEVRPKLKKATFTCRKCGHTVG---------VKITEPT  52

Query  364  YCQN--CQSKGPFTINSEKTVYRNYQKLTLQESPGSVPAGRLPRQREVVLLADLIDSAKP  421
             C N  C +K PF +  EK+ + ++QK+ +QESP  VPAG LPR  +V+L  DL+D  KP
Sbjct  53   KCPNPECGNKDPFKLVHEKSKFVDFQKIKIQESPEEVPAGELPRSLDVILDDDLVDRVKP  112

Query  422  GDEIEVTGIYRNSY  435
            GD + VTGIYR   
Sbjct  113  GDRVTVTGIYRVVP  126


>CDD:403724 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2.  This 
domain family is found in eukaryotes, and is typically between 
138 and 153 amino acids in length. The family is found 
in association with pfam00493. Mini-chromosome maintenance 
(MCM) proteins are essential for DNA replication. These proteins 
use ATPase activity to perform this function.
Length=148

 Score = 145 bits (368),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 78/140 (56%), Positives = 95/140 (68%), Gaps = 13/140 (9%)

Query  67   DIDDIDEMAEDEDGIDLFGDNFERDYR-DVGNDRYEGEYIDDDGDHEELDIATRRQLEAR  125
            DIDD+D   E+EDG DLFGDN E DYR +   DRY+ + IDD+GD+EE+D A RR+ EA+
Sbjct  11   DIDDLDPDEEEEDGEDLFGDNMEDDYRQNPELDRYDLDDIDDEGDYEEMDAAERRRAEAQ  70

Query  126  LNRR-DRELERRRRMPAAFLQDDDE-----GDMDLTRQPRRRRHHYDEDREDIEMGDDAM  179
            LNRR       RRR PAAFLQDDD+     GD  L  Q RRRR HYDED+++    D+ +
Sbjct  71   LNRRDRELGAARRRRPAAFLQDDDDEDDLDGDYGLPIQRRRRRRHYDEDQDE--DMDEDI  128

Query  180  ----EELSLEELADVKAANI  195
                EELSLE LADVKA +I
Sbjct  129  DPFEEELSLESLADVKADSI  148


>CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain.  This entry represents 
the AAA-lid domain found in MCM proteins.
Length=86

 Score = 115 bits (290),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 40/86 (47%), Positives = 60/86 (70%), Gaps = 1/86 (1%)

Query  762  ELLRKYILYAREKCHPKLYQIDQDKVARLFADMRRESL-ATGAYPITVRHLEAIMRIAEA  820
            ELLRKYI YAREK  PKL +  ++K+   + ++R+ES  +  + PITVR LE+++R++EA
Sbjct  1    ELLRKYIAYAREKIKPKLSEEAREKLVDAYVELRKESTGSGSSIPITVRQLESLIRLSEA  60

Query  821  FCKMRLSEYCSAQDIDRAIAVTVESF  846
              KMRLSE  + +D++ AI +  ES 
Sbjct  61   HAKMRLSEIVTEEDVEEAIRLLKESL  86


>CDD:464206 pfam14551, MCM_N, MCM N-terminal domain.  This family contains 
the N-terminal domain of MCM proteins.
Length=95

 Score = 74.6 bits (184),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 30/94 (32%), Positives = 43/94 (46%), Gaps = 3/94 (3%)

Query  210  REFKAFLTEFT-DQAGQSVYGHKIKTLGEVNSASLEVSYVHLSSTKAALSYFLANEPTEV  268
            R+FK FL EF  D  G+  Y  +++ + E    SLEV    L      L+  L   P E 
Sbjct  2    RKFKDFLEEFREDGDGEFKYRDQLREMIEREQRSLEVDLDDLREFDPDLAEALLENPYEY  61

Query  269  LKVFDQVALDV--TLFHYPQYQDIHKEIHVRISD  300
            L +F++   +V   L   P Y +  KE  VR  +
Sbjct  62   LPLFEEALKEVVKELSEDPDYAEEEKEFQVRFYN  95



Lambda      K        H        a         alpha
   0.317    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0767    0.140     1.90     42.6     43.6 

Effective search space used: 1103910266


Query= TCONS_00027467

Length=892
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459830 pfam00493, MCM, MCM2/3/5 family                            411     3e-139
CDD:465381 pfam17207, MCM_OB, MCM OB domain. This family contains...  173     3e-51 
CDD:403724 pfam12619, MCM2_N, Mini-chromosome maintenance protein...  147     1e-41 
CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain. This entry rep...  115     3e-31 
CDD:464206 pfam14551, MCM_N, MCM N-terminal domain. This family c...  75.0    5e-17 


>CDD:459830 pfam00493, MCM, MCM2/3/5 family.  
Length=224

 Score = 411 bits (1058),  Expect = 3e-139, Method: Composition-based stats.
 Identities = 139/224 (62%), Positives = 175/224 (78%), Gaps = 0/224 (0%)

Query  473  DERQIRALSRDPDIVDKIVRSIAPSIYGHQDVKTAVALSLFGGVSKEAQGKMAIRGDINV  532
            DE +I+ L++ PDI DK+  SIAPSIYGH+DVK A+ L LFGGV K       +RGDINV
Sbjct  1    DEEEIKELAKRPDIYDKLADSIAPSIYGHEDVKKAILLQLFGGVKKILPDGTRLRGDINV  60

Query  533  LLLGDPGTAKSQVLKYVEKTAHRAVFATGQGASAVGLTASVRRDPLTSEWTLEGGALVLA  592
            LL+GDPGTAKSQ+LKYVEK A RAV+ +G+G+SA GLTA+V RDP+T E+ LE GALVLA
Sbjct  61   LLVGDPGTAKSQLLKYVEKIAPRAVYTSGKGSSAAGLTAAVVRDPVTGEFVLEAGALVLA  120

Query  593  DRGTCLIDEFDKMNDQDRTSIHEAMEQQTISISKAGIVTTLQARCAVVAAANPIGGRYNS  652
            D G C IDEFDKMND+DR ++HEAMEQQTISI+KAGIV TL ARC+++AAANPI GRY+ 
Sbjct  121  DGGVCCIDEFDKMNDEDRVALHEAMEQQTISIAKAGIVATLNARCSILAAANPIFGRYDP  180

Query  653  TIPFSQNVELTEPILSRFDILCVVRDTVDPNEDERLANFVIESH  696
                ++N+ L  P+LSRFD++ V+ D  D  +DERLA  +++ H
Sbjct  181  KKSIAENINLPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH  224


>CDD:465381 pfam17207, MCM_OB, MCM OB domain.  This family contains an OB-fold 
found within MCM proteins. This domain contains an insertion 
at the zinc binding motif.
Length=126

 Score = 173 bits (442),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 61/134 (46%), Positives = 82/134 (61%), Gaps = 14/134 (10%)

Query  307  LRQLRQQHLNCLVRVSGVVTRRTGVFPQLKYVMFICQKCNITLGPFQQEASAEVKI---S  363
            +R LR +H+  LV VSG+VTR + V P+LK   F C+KC  T+G         VKI   +
Sbjct  2    IRDLRSEHIGKLVSVSGIVTRTSEVRPKLKKATFTCRKCGHTVG---------VKITEPT  52

Query  364  YCQN--CQSKGPFTINSEKTVYRNYQKLTLQESPGSVPAGRLPRQREVVLLADLIDSAKP  421
             C N  C +K PF +  EK+ + ++QK+ +QESP  VPAG LPR  +V+L  DL+D  KP
Sbjct  53   KCPNPECGNKDPFKLVHEKSKFVDFQKIKIQESPEEVPAGELPRSLDVILDDDLVDRVKP  112

Query  422  GDEIEVTGIYRNSY  435
            GD + VTGIYR   
Sbjct  113  GDRVTVTGIYRVVP  126


>CDD:403724 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2.  This 
domain family is found in eukaryotes, and is typically between 
138 and 153 amino acids in length. The family is found 
in association with pfam00493. Mini-chromosome maintenance 
(MCM) proteins are essential for DNA replication. These proteins 
use ATPase activity to perform this function.
Length=148

 Score = 147 bits (373),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 78/140 (56%), Positives = 95/140 (68%), Gaps = 13/140 (9%)

Query  67   DIDDIDEMAEDEDGIDLFGDNFERDYR-DVGNDRYEGEYIDDDGDHEELDIATRRQLEAR  125
            DIDD+D   E+EDG DLFGDN E DYR +   DRY+ + IDD+GD+EE+D A RR+ EA+
Sbjct  11   DIDDLDPDEEEEDGEDLFGDNMEDDYRQNPELDRYDLDDIDDEGDYEEMDAAERRRAEAQ  70

Query  126  LNRR-DRELERRRRMPAAFLQDDDE-----GDMDLTRQPRRRRHHYDEDREDIEMGDDAM  179
            LNRR       RRR PAAFLQDDD+     GD  L  Q RRRR HYDED+++    D+ +
Sbjct  71   LNRRDRELGAARRRRPAAFLQDDDDEDDLDGDYGLPIQRRRRRRHYDEDQDE--DMDEDI  128

Query  180  ----EELSLEELADVKAANI  195
                EELSLE LADVKA +I
Sbjct  129  DPFEEELSLESLADVKADSI  148


>CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain.  This entry represents 
the AAA-lid domain found in MCM proteins.
Length=86

 Score = 115 bits (290),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 40/86 (47%), Positives = 60/86 (70%), Gaps = 1/86 (1%)

Query  762  ELLRKYILYAREKCHPKLYQIDQDKVARLFADMRRESL-ATGAYPITVRHLEAIMRIAEA  820
            ELLRKYI YAREK  PKL +  ++K+   + ++R+ES  +  + PITVR LE+++R++EA
Sbjct  1    ELLRKYIAYAREKIKPKLSEEAREKLVDAYVELRKESTGSGSSIPITVRQLESLIRLSEA  60

Query  821  FCKMRLSEYCSAQDIDRAIAVTVESF  846
              KMRLSE  + +D++ AI +  ES 
Sbjct  61   HAKMRLSEIVTEEDVEEAIRLLKESL  86


>CDD:464206 pfam14551, MCM_N, MCM N-terminal domain.  This family contains 
the N-terminal domain of MCM proteins.
Length=95

 Score = 75.0 bits (185),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 30/94 (32%), Positives = 43/94 (46%), Gaps = 3/94 (3%)

Query  210  REFKAFLTEFT-DQAGQSVYGHKIKTLGEVNSASLEVSYVHLSSTKAALSYFLANEPTEV  268
            R+FK FL EF  D  G+  Y  +++ + E    SLEV    L      L+  L   P E 
Sbjct  2    RKFKDFLEEFREDGDGEFKYRDQLREMIEREQRSLEVDLDDLREFDPDLAEALLENPYEY  61

Query  269  LKVFDQVALDV--TLFHYPQYQDIHKEIHVRISD  300
            L +F++   +V   L   P Y +  KE  VR  +
Sbjct  62   LPLFEEALKEVVKELSEDPDYAEEEKEFQVRFYN  95



Lambda      K        H        a         alpha
   0.317    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1144104658


Query= TCONS_00023065

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428575 pfam05669, Med31, SOH1. The family consists of Sacchar...  122     2e-37


>CDD:428575 pfam05669, Med31, SOH1.  The family consists of Saccharomyces 
cerevisiae SOH1 homologs. SOH1 is responsible for the repression 
of temperature sensitive growth of the HPR1 mutant and 
has been found to be a component of the RNA polymerase II transcription 
complex. SOH1 not only interacts with factors involved 
in DNA repair, but transcription as well. Thus, the 
SOH1 protein may serve to couple these two processes.
Length=95

 Score = 122 bits (308),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 49/114 (43%), Positives = 56/114 (49%), Gaps = 22/114 (19%)

Query  19   NPRFTLELEFVSSLANPYYLSHLAVTYPNLLGISKSSDDSNTSTEGPDPEAQAFAAYLAY  78
              RF LELEFV SLANP YL+HLA      L                  E  AF  YL Y
Sbjct  1    KTRFELELEFVQSLANPQYLNHLAQN--GYL------------------EDPAFINYLKY  40

Query  79   LYSYWKTPEYAQFLTHPGATLRALRLLQEESFRRDIIRPQVIEALAGNGLENVQ  132
            L  YWK PEYA+FLT+P   L  L LLQ E FR++I  P   + L      + Q
Sbjct  41   L-QYWKEPEYAKFLTYPH-CLHFLDLLQNEEFRQEISNPDFAKFLMDQQYLHWQ  92



Lambda      K        H        a         alpha
   0.312    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00023066

Length=1170


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1498163374


Query= TCONS_00023067

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460441 pfam02089, Palm_thioest, Palmitoyl protein thioesterase    336     4e-118


>CDD:460441 pfam02089, Palm_thioest, Palmitoyl protein thioesterase.  
Length=248

 Score = 336 bits (865),  Expect = 4e-118, Method: Composition-based stats.
 Identities = 121/242 (50%), Positives = 150/242 (62%), Gaps = 12/242 (5%)

Query  1    MKEVAALAESTNPGTYVHLIHLGDTASADRQATFIGNLTEQIALVCDQLRADPILSTAPA  60
            M+ +A L +  +PGTYVH I +GD  S DR+A+F GN+ EQ+  VC+QL+  P L     
Sbjct  17   MQSLAELIKEAHPGTYVHSIDIGDGPSEDRKASFFGNMNEQVEAVCEQLK--PELPANG-  73

Query  61   VNALGFSQGGQFLRGYVERCNDPPVRNLVTFGSQHNGIAEFQECAWSDWICRGAEALLRA  120
             NA+GFSQGG FLRG VERC DPPV NL++ G  H G+        +         LL  
Sbjct  74   FNAIGFSQGGLFLRGLVERCPDPPVHNLISLGGPHMGVFGLPFACCNA-------LLLGG  126

Query  121  GRWSSLAQSRFVPAQYFRDPEELDAYLEHSNFLADINNER-VLKNKRYAENLAGLNRFAM  179
              +S   Q   V AQY+RDP +LD YL+ S FLADINNER   KN+ Y ENL  L    +
Sbjct  127  LVYSDWVQKHLVQAQYWRDPTDLDEYLKKSKFLADINNERPHRKNETYKENLLSLENLVL  186

Query  180  YMFEDDTMVNPKESAWFAEVNR-TNGEVTPLKERRLYKEDWLGLKALDEQGKLDFRTVPG  238
              F DDT V PKES+WF   +  T+G V PL+E  LYKEDW+GLK LDEQGKL F ++PG
Sbjct  187  VGFPDDTTVVPKESSWFGFYDDGTSGVVVPLEETPLYKEDWIGLKTLDEQGKLHFLSIPG  246

Query  239  GH  240
             H
Sbjct  247  DH  248



Lambda      K        H        a         alpha
   0.318    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00023068

Length=331


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00023069

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400643 pfam08433, KTI12, Chromatin associated protein KTI12. ...  101     6e-26


>CDD:400643 pfam08433, KTI12, Chromatin associated protein KTI12.  This is 
a family of chromatin associated proteins which interact with 
the Elongator complex, a component of the elongating form 
of RNA polymerase II. The Elongator complex has histone acetyltransferase 
activity.
Length=269

 Score = 101 bits (255),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 85/237 (36%), Gaps = 85/237 (36%)

Query  67   DTEEPYPPDLLKNLIFRYEEPSTYSRWDKPLFTVLWSDPEPPIAEIWTALTGIPHPSTST  126
              +  YP +LL  LI RYEEP++ +RWD PLFTVL  D   P+ EIW AL          
Sbjct  118  GQKSRYPDELLDALIQRYEEPNSKNRWDSPLFTVLSDDETLPLDEIWKAL----------  167

Query  127  EPETPVTSLTSVLASSALLSDTASINTSATARTPRTAALHRPKIKPHQATVQPTATDSSA  186
                                                  + +  + P+QAT     ++++ 
Sbjct  168  --------------------------------------IEKQPLPPNQATQLKPLSETNF  189

Query  187  LYAMEKCTSAIVSAIRSYALTNPSAEAALAQNPDARGIAIPVPEASSPIFIPAHVATSGT  246
            L  ++K T  IVS I            A         + IP P   S +           
Sbjct  190  LQELDKETQDIVSEILK----------AQQSAVAIGLVTIPGPPEPSALPAA--------  231

Query  247  TDELAGAGGILALPRLQRLRRQWIGLNRAYVGVNHASAVKGGLAPDQVGDAFVRFLN  303
                      + L  LQRLRRQ++ +N+    V+           D++   FV +LN
Sbjct  232  ---------PVTLAELQRLRRQFVQMNKKLRPVD----------LDRIAPLFVDYLN  269



Lambda      K        H        a         alpha
   0.311    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00023070

Length=586


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 738247432


Query= TCONS_00023073

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00023072

Length=26


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82037150


Query= TCONS_00023071

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00027468

Length=391


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00023074

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400643 pfam08433, KTI12, Chromatin associated protein KTI12. ...  101     6e-26


>CDD:400643 pfam08433, KTI12, Chromatin associated protein KTI12.  This is 
a family of chromatin associated proteins which interact with 
the Elongator complex, a component of the elongating form 
of RNA polymerase II. The Elongator complex has histone acetyltransferase 
activity.
Length=269

 Score = 101 bits (255),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 85/237 (36%), Gaps = 85/237 (36%)

Query  67   DTEEPYPPDLLKNLIFRYEEPSTYSRWDKPLFTVLWSDPEPPIAEIWTALTGIPHPSTST  126
              +  YP +LL  LI RYEEP++ +RWD PLFTVL  D   P+ EIW AL          
Sbjct  118  GQKSRYPDELLDALIQRYEEPNSKNRWDSPLFTVLSDDETLPLDEIWKAL----------  167

Query  127  EPETPVTSLTSVLASSALLSDTASINTSATARTPRTAALHRPKIKPHQATVQPTATDSSA  186
                                                  + +  + P+QAT     ++++ 
Sbjct  168  --------------------------------------IEKQPLPPNQATQLKPLSETNF  189

Query  187  LYAMEKCTSAIVSAIRSYALTNPSAEAALAQNPDARGIAIPVPEASSPIFIPAHVATSGT  246
            L  ++K T  IVS I            A         + IP P   S +           
Sbjct  190  LQELDKETQDIVSEILK----------AQQSAVAIGLVTIPGPPEPSALPAA--------  231

Query  247  TDELAGAGGILALPRLQRLRRQWIGLNRAYVGVNHASAVKGGLAPDQVGDAFVRFLN  303
                      + L  LQRLRRQ++ +N+    V+           D++   FV +LN
Sbjct  232  ---------PVTLAELQRLRRQFVQMNKKLRPVD----------LDRIAPLFVDYLN  269



Lambda      K        H        a         alpha
   0.311    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00023075

Length=291


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00023077

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400643 pfam08433, KTI12, Chromatin associated protein KTI12. ...  101     6e-26


>CDD:400643 pfam08433, KTI12, Chromatin associated protein KTI12.  This is 
a family of chromatin associated proteins which interact with 
the Elongator complex, a component of the elongating form 
of RNA polymerase II. The Elongator complex has histone acetyltransferase 
activity.
Length=269

 Score = 101 bits (255),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 85/237 (36%), Gaps = 85/237 (36%)

Query  67   DTEEPYPPDLLKNLIFRYEEPSTYSRWDKPLFTVLWSDPEPPIAEIWTALTGIPHPSTST  126
              +  YP +LL  LI RYEEP++ +RWD PLFTVL  D   P+ EIW AL          
Sbjct  118  GQKSRYPDELLDALIQRYEEPNSKNRWDSPLFTVLSDDETLPLDEIWKAL----------  167

Query  127  EPETPVTSLTSVLASSALLSDTASINTSATARTPRTAALHRPKIKPHQATVQPTATDSSA  186
                                                  + +  + P+QAT     ++++ 
Sbjct  168  --------------------------------------IEKQPLPPNQATQLKPLSETNF  189

Query  187  LYAMEKCTSAIVSAIRSYALTNPSAEAALAQNPDARGIAIPVPEASSPIFIPAHVATSGT  246
            L  ++K T  IVS I            A         + IP P   S +           
Sbjct  190  LQELDKETQDIVSEILK----------AQQSAVAIGLVTIPGPPEPSALPAA--------  231

Query  247  TDELAGAGGILALPRLQRLRRQWIGLNRAYVGVNHASAVKGGLAPDQVGDAFVRFLN  303
                      + L  LQRLRRQ++ +N+    V+           D++   FV +LN
Sbjct  232  ---------PVTLAELQRLRRQFVQMNKKLRPVD----------LDRIAPLFVDYLN  269



Lambda      K        H        a         alpha
   0.311    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00023076

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400643 pfam08433, KTI12, Chromatin associated protein KTI12. ...  101     6e-26


>CDD:400643 pfam08433, KTI12, Chromatin associated protein KTI12.  This is 
a family of chromatin associated proteins which interact with 
the Elongator complex, a component of the elongating form 
of RNA polymerase II. The Elongator complex has histone acetyltransferase 
activity.
Length=269

 Score = 101 bits (255),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 85/237 (36%), Gaps = 85/237 (36%)

Query  67   DTEEPYPPDLLKNLIFRYEEPSTYSRWDKPLFTVLWSDPEPPIAEIWTALTGIPHPSTST  126
              +  YP +LL  LI RYEEP++ +RWD PLFTVL  D   P+ EIW AL          
Sbjct  118  GQKSRYPDELLDALIQRYEEPNSKNRWDSPLFTVLSDDETLPLDEIWKAL----------  167

Query  127  EPETPVTSLTSVLASSALLSDTASINTSATARTPRTAALHRPKIKPHQATVQPTATDSSA  186
                                                  + +  + P+QAT     ++++ 
Sbjct  168  --------------------------------------IEKQPLPPNQATQLKPLSETNF  189

Query  187  LYAMEKCTSAIVSAIRSYALTNPSAEAALAQNPDARGIAIPVPEASSPIFIPAHVATSGT  246
            L  ++K T  IVS I            A         + IP P   S +           
Sbjct  190  LQELDKETQDIVSEILK----------AQQSAVAIGLVTIPGPPEPSALPAA--------  231

Query  247  TDELAGAGGILALPRLQRLRRQWIGLNRAYVGVNHASAVKGGLAPDQVGDAFVRFLN  303
                      + L  LQRLRRQ++ +N+    V+           D++   FV +LN
Sbjct  232  ---------PVTLAELQRLRRQFVQMNKKLRPVD----------LDRIAPLFVDYLN  269



Lambda      K        H        a         alpha
   0.311    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00023078

Length=291


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00023079

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.122    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00023080

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.116    0.314    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00027469

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.116    0.314    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00027470

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00023082

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00023081

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00023083

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00027471

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00023084

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00023085

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00027472

Length=655


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00027473

Length=655


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00023086

Length=655


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00023087

Length=472


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0814    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00023088

Length=472


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00023090

Length=655


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00023089

Length=655


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00027474

Length=655


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00027476

Length=472


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00023091

Length=362


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00023092

Length=268


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00023093

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved ...  162     8e-50


>CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved in bacteria 
(DUF2236).  This domain, found in various hypothetical 
bacterial proteins, has no known function. This family contains 
a highly conserved arginine and histidine that may be active 
site residues for an as yet unknown catalytic activity.
Length=223

 Score = 162 bits (412),  Expect = 8e-50, Method: Composition-based stats.
 Identities = 81/233 (35%), Positives = 114/233 (49%), Gaps = 20/233 (9%)

Query  38   QILQEGILFAGSGTALLLQAATPEIR---NDHDKANNGPNLATELGNALQAMMSYVSCLV  94
                EGIL AG   ALLLQAA P +     DH       N  T+    L+  ++YV+ + 
Sbjct  3    VHGDEGILLAGGLRALLLQAAHPLVGAGVADHS------NFRTDPWGRLRRTLTYVATVT  56

Query  95   FATRQEKKTLLDMLNRGQPPLRG----SEHYYAAAPDVQLWIAATLYATATDFYQRIYGR  150
            F T +E + L + + R    +RG       Y A  P++ LW+ ATLYA+  D Y+R  G 
Sbjct  57   FGTGEEAEALAERVRRMHARVRGTDDSGRRYSALDPELLLWVHATLYASFLDAYERFGGP  116

Query  151  VDYRTAEKAYAEFGLLVHTLGLPSGVWPETRQKFWTYWDDRI-ERLTVTPDANKFAKDLL  209
            +    A++ YAE+  L   LG+P   WP TR +FW YWDD +   L VTP+    A++L 
Sbjct  117  LTDAEADRYYAEWRRLGRLLGVPPRDWPATRAEFWAYWDDMLRPELEVTPE----ARELA  172

Query  210  HDKAVPRWVQMLKPFLRVVTIEMLPPRLREEYGLKSTMGTRGLYRSTMGFSNA  262
              + +P         LR +T+ +LPP  RE  GL  T   R   R+      A
Sbjct  173  PVRFLPARP--AGRLLRALTVGLLPPWARELLGLPWTARDRRRLRALARLVRA  223



Lambda      K        H        a         alpha
   0.319    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00023094

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00023095

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425567 pfam00266, Aminotran_5, Aminotransferase class-V. This...  357     7e-121


>CDD:425567 pfam00266, Aminotran_5, Aminotransferase class-V.  This domain 
is found in amino transferases, and other enzymes including 
cysteine desulphurase EC:4.4.1.-.
Length=368

 Score = 357 bits (919),  Expect = 7e-121, Method: Composition-based stats.
 Identities = 126/384 (33%), Positives = 184/384 (48%), Gaps = 35/384 (9%)

Query  118  IYLDMQATTPVDPRVLDAMLPYLTGIYGNPHSRTHAYGWESEKAVEQAREYIAKLIGA-D  176
            IYLD  ATT     VLDA+  Y T   GN H   H  G E+ +A E+ARE +A+ I A  
Sbjct  1    IYLDSAATTQKPQEVLDAIQEYYTDYNGNVHRGVHTLGKEATQAYEEAREKVAEFINAPS  60

Query  177  PKEIIFTSGATESNNMSIKGVARFFGRSGKKKHIITSQTEHKCVLDSCRHL-QDEGFEVT  235
              EIIFTSG TE+ N+    + R          I+ ++ EH   L   + L +  G  V 
Sbjct  61   NDEIIFTSGTTEAINLVALSLGRSLK---PGDEIVITEMEHHANLVPWQELAKRTGARVR  117

Query  236  YLPVQNNGLIRMEDLEAAIRPDTALVSIMAVNNEIGVIQPLEEIGKLCRAKKVFFHTDAA  295
             LP+  +GL+ +++LE  I P T LV+I  V+N  G IQP+ EIGKL          DAA
Sbjct  118  VLPLDEDGLLDLDELEKLITPKTKLVAITHVSNVTGTIQPVPEIGKLAHQYGALVLVDAA  177

Query  296  QAVGKIPLDVNKLNIDLMSISSHKIYGPKGIGACYVRRRPRVRLEPIISGGG-------Q  348
            QA+G  P+DV KL +D ++ S HK+YGP GIG  Y RR    ++ P++ GGG       Q
Sbjct  178  QAIGHRPIDVQKLGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKMPPLLGGGGMIETVSLQ  237

Query  349  ERGL-------RSGTLAPHLVVGFGEACR-IASQDMEYDRKHVERLSKRLLDGLLAMEHT  400
            E           +GT     ++G G A   ++   +E   KH   L++ L + LL++   
Sbjct  238  ESTFADAPWKFEAGTPNIAGIIGLGAALEYLSEIGLEAIEKHEHELAQYLYERLLSLPGI  297

Query  401  TLNGDAERHYPGCVNVSFAYIEGESLLMALKD--IALSSGSACTSASLEPSYVLRALGSS  458
             L G   R     ++ +F  +    +   L +  IA+ SG  C     +P  V   L   
Sbjct  298  RLYGPERR--ASIISFNFKGVHPHDVATLLDESGIAVRSGHHCA----QPLMVRLGL---  348

Query  459  DESAHSSIRFGIGRFTTDSEIDYV  482
                  ++R     + T  ++D +
Sbjct  349  ----GGTVRASFYIYNTQEDVDRL  368



Lambda      K        H        a         alpha
   0.317    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00027477

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425567 pfam00266, Aminotran_5, Aminotransferase class-V. This...  357     7e-121


>CDD:425567 pfam00266, Aminotran_5, Aminotransferase class-V.  This domain 
is found in amino transferases, and other enzymes including 
cysteine desulphurase EC:4.4.1.-.
Length=368

 Score = 357 bits (919),  Expect = 7e-121, Method: Composition-based stats.
 Identities = 126/384 (33%), Positives = 184/384 (48%), Gaps = 35/384 (9%)

Query  118  IYLDMQATTPVDPRVLDAMLPYLTGIYGNPHSRTHAYGWESEKAVEQAREYIAKLIGA-D  176
            IYLD  ATT     VLDA+  Y T   GN H   H  G E+ +A E+ARE +A+ I A  
Sbjct  1    IYLDSAATTQKPQEVLDAIQEYYTDYNGNVHRGVHTLGKEATQAYEEAREKVAEFINAPS  60

Query  177  PKEIIFTSGATESNNMSIKGVARFFGRSGKKKHIITSQTEHKCVLDSCRHL-QDEGFEVT  235
              EIIFTSG TE+ N+    + R          I+ ++ EH   L   + L +  G  V 
Sbjct  61   NDEIIFTSGTTEAINLVALSLGRSLK---PGDEIVITEMEHHANLVPWQELAKRTGARVR  117

Query  236  YLPVQNNGLIRMEDLEAAIRPDTALVSIMAVNNEIGVIQPLEEIGKLCRAKKVFFHTDAA  295
             LP+  +GL+ +++LE  I P T LV+I  V+N  G IQP+ EIGKL          DAA
Sbjct  118  VLPLDEDGLLDLDELEKLITPKTKLVAITHVSNVTGTIQPVPEIGKLAHQYGALVLVDAA  177

Query  296  QAVGKIPLDVNKLNIDLMSISSHKIYGPKGIGACYVRRRPRVRLEPIISGGG-------Q  348
            QA+G  P+DV KL +D ++ S HK+YGP GIG  Y RR    ++ P++ GGG       Q
Sbjct  178  QAIGHRPIDVQKLGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKMPPLLGGGGMIETVSLQ  237

Query  349  ERGL-------RSGTLAPHLVVGFGEACR-IASQDMEYDRKHVERLSKRLLDGLLAMEHT  400
            E           +GT     ++G G A   ++   +E   KH   L++ L + LL++   
Sbjct  238  ESTFADAPWKFEAGTPNIAGIIGLGAALEYLSEIGLEAIEKHEHELAQYLYERLLSLPGI  297

Query  401  TLNGDAERHYPGCVNVSFAYIEGESLLMALKD--IALSSGSACTSASLEPSYVLRALGSS  458
             L G   R     ++ +F  +    +   L +  IA+ SG  C     +P  V   L   
Sbjct  298  RLYGPERR--ASIISFNFKGVHPHDVATLLDESGIAVRSGHHCA----QPLMVRLGL---  348

Query  459  DESAHSSIRFGIGRFTTDSEIDYV  482
                  ++R     + T  ++D +
Sbjct  349  ----GGTVRASFYIYNTQEDVDRL  368



Lambda      K        H        a         alpha
   0.317    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00023096

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425567 pfam00266, Aminotran_5, Aminotransferase class-V. This...  295     2e-98


>CDD:425567 pfam00266, Aminotran_5, Aminotransferase class-V.  This domain 
is found in amino transferases, and other enzymes including 
cysteine desulphurase EC:4.4.1.-.
Length=368

 Score = 295 bits (758),  Expect = 2e-98, Method: Composition-based stats.
 Identities = 104/280 (37%), Positives = 143/280 (51%), Gaps = 20/280 (7%)

Query  118  IYLDMQATTPVDPRVLDAMLPYLTGIYGNPHSRTHAYGWESEKAVEQAREYIAKLIGA-D  176
            IYLD  ATT     VLDA+  Y T   GN H   H  G E+ +A E+ARE +A+ I A  
Sbjct  1    IYLDSAATTQKPQEVLDAIQEYYTDYNGNVHRGVHTLGKEATQAYEEAREKVAEFINAPS  60

Query  177  PKEIIFTSGATESNNMSIKGVARFFGRSGKKKHIITSQTEHKCVLDSCRHL-QDEGFEVT  235
              EIIFTSG TE+ N+    + R          I+ ++ EH   L   + L +  G  V 
Sbjct  61   NDEIIFTSGTTEAINLVALSLGRSLK---PGDEIVITEMEHHANLVPWQELAKRTGARVR  117

Query  236  YLPVQNNGLIRMEDLEAAIRPDTALVSIMAVNNEIGVIQPLEEIGKLCRAKKVFFHTDAA  295
             LP+  +GL+ +++LE  I P T LV+I  V+N  G IQP+ EIGKL          DAA
Sbjct  118  VLPLDEDGLLDLDELEKLITPKTKLVAITHVSNVTGTIQPVPEIGKLAHQYGALVLVDAA  177

Query  296  QAVGKIPLDVNKLNIDLMSISSHKIYGPKGIGACYVRRRPRVRLEPIISGGG-------Q  348
            QA+G  P+DV KL +D ++ S HK+YGP GIG  Y RR    ++ P++ GGG       Q
Sbjct  178  QAIGHRPIDVQKLGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKMPPLLGGGGMIETVSLQ  237

Query  349  ERGL-------RSGTLAPHLVVGFGEACR-IASQDMEEAR  380
            E           +GT     ++G G A   ++   +E   
Sbjct  238  ESTFADAPWKFEAGTPNIAGIIGLGAALEYLSEIGLEAIE  277



Lambda      K        H        a         alpha
   0.316    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00027479

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425567 pfam00266, Aminotran_5, Aminotransferase class-V. This...  294     5e-98


>CDD:425567 pfam00266, Aminotran_5, Aminotransferase class-V.  This domain 
is found in amino transferases, and other enzymes including 
cysteine desulphurase EC:4.4.1.-.
Length=368

 Score = 294 bits (755),  Expect = 5e-98, Method: Composition-based stats.
 Identities = 104/277 (38%), Positives = 143/277 (52%), Gaps = 20/277 (7%)

Query  118  IYLDMQATTPVDPRVLDAMLPYLTGIYGNPHSRTHAYGWESEKAVEQAREYIAKLIGA-D  176
            IYLD  ATT     VLDA+  Y T   GN H   H  G E+ +A E+ARE +A+ I A  
Sbjct  1    IYLDSAATTQKPQEVLDAIQEYYTDYNGNVHRGVHTLGKEATQAYEEAREKVAEFINAPS  60

Query  177  PKEIIFTSGATESNNMSIKGVARFFGRSGKKKHIITSQTEHKCVLDSCRHL-QDEGFEVT  235
              EIIFTSG TE+ N+    + R          I+ ++ EH   L   + L +  G  V 
Sbjct  61   NDEIIFTSGTTEAINLVALSLGRSLK---PGDEIVITEMEHHANLVPWQELAKRTGARVR  117

Query  236  YLPVQNNGLIRMEDLEAAIRPDTALVSIMAVNNEIGVIQPLEEIGKLCRAKKVFFHTDAA  295
             LP+  +GL+ +++LE  I P T LV+I  V+N  G IQP+ EIGKL          DAA
Sbjct  118  VLPLDEDGLLDLDELEKLITPKTKLVAITHVSNVTGTIQPVPEIGKLAHQYGALVLVDAA  177

Query  296  QAVGKIPLDVNKLNIDLMSISSHKIYGPKGIGACYVRRRPRVRLEPIISGGG-------Q  348
            QA+G  P+DV KL +D ++ S HK+YGP GIG  Y RR    ++ P++ GGG       Q
Sbjct  178  QAIGHRPIDVQKLGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKMPPLLGGGGMIETVSLQ  237

Query  349  ERGL-------RSGTLAPHLVVGFGEACR-IASQDME  377
            E           +GT     ++G G A   ++   +E
Sbjct  238  ESTFADAPWKFEAGTPNIAGIIGLGAALEYLSEIGLE  274



Lambda      K        H        a         alpha
   0.316    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00027478

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425567 pfam00266, Aminotran_5, Aminotransferase class-V. This...  314     2e-105


>CDD:425567 pfam00266, Aminotran_5, Aminotransferase class-V.  This domain 
is found in amino transferases, and other enzymes including 
cysteine desulphurase EC:4.4.1.-.
Length=368

 Score = 314 bits (807),  Expect = 2e-105, Method: Composition-based stats.
 Identities = 112/305 (37%), Positives = 156/305 (51%), Gaps = 20/305 (7%)

Query  118  IYLDMQATTPVDPRVLDAMLPYLTGIYGNPHSRTHAYGWESEKAVEQAREYIAKLIGA-D  176
            IYLD  ATT     VLDA+  Y T   GN H   H  G E+ +A E+ARE +A+ I A  
Sbjct  1    IYLDSAATTQKPQEVLDAIQEYYTDYNGNVHRGVHTLGKEATQAYEEAREKVAEFINAPS  60

Query  177  PKEIIFTSGATESNNMSIKGVARFFGRSGKKKHIITSQTEHKCVLDSCRHL-QDEGFEVT  235
              EIIFTSG TE+ N+    + R          I+ ++ EH   L   + L +  G  V 
Sbjct  61   NDEIIFTSGTTEAINLVALSLGRSLK---PGDEIVITEMEHHANLVPWQELAKRTGARVR  117

Query  236  YLPVQNNGLIRMEDLEAAIRPDTALVSIMAVNNEIGVIQPLEEIGKLCRAKKVFFHTDAA  295
             LP+  +GL+ +++LE  I P T LV+I  V+N  G IQP+ EIGKL          DAA
Sbjct  118  VLPLDEDGLLDLDELEKLITPKTKLVAITHVSNVTGTIQPVPEIGKLAHQYGALVLVDAA  177

Query  296  QAVGKIPLDVNKLNIDLMSISSHKIYGPKGIGACYVRRRPRVRLEPIISGGG-------Q  348
            QA+G  P+DV KL +D ++ S HK+YGP GIG  Y RR    ++ P++ GGG       Q
Sbjct  178  QAIGHRPIDVQKLGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKMPPLLGGGGMIETVSLQ  237

Query  349  ERGL-------RSGTLAPHLVVGFGEACR-IASQDMEYDRKHVERLSKRLLDGLLAMEHT  400
            E           +GT     ++G G A   ++   +E   KH   L++ L + LL++   
Sbjct  238  ESTFADAPWKFEAGTPNIAGIIGLGAALEYLSEIGLEAIEKHEHELAQYLYERLLSLPGI  297

Query  401  TLNGD  405
             L G 
Sbjct  298  RLYGP  302



Lambda      K        H        a         alpha
   0.317    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00023097

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00023098

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460123 pfam01231, IDO, Indoleamine 2,3-dioxygenase                661     0.0  


>CDD:460123 pfam01231, IDO, Indoleamine 2,3-dioxygenase.  
Length=406

 Score = 661 bits (1708),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/427 (59%), Positives = 305/427 (71%), Gaps = 22/427 (5%)

Query  7    ALADYGVSPDHGFLPPEPPLEALPDPYYAKWEWIASNLQSLLHSGRIRDVVNCLPILQTR  66
            AL DY VSP+ GFLPPE PLE LPD YY  WE IA NL +L+ SGR+R VV+ LP+L T 
Sbjct  1    ALEDYDVSPETGFLPPELPLERLPD-YYEPWEAIADNLPALILSGRLRAVVDKLPVLSTD  59

Query  67   YLHSEDEWRRAYVVLTFMLHGYVWG-GKTPEERIPPQLTIPLLEVCDHLELPPVATYAAV  125
             L SE E RRA++VL F+ H YVWG G  P E +PP + +PLLEV +HL LPPV TYA +
Sbjct  60   QLESELELRRAHLVLAFLTHAYVWGEGDKPSEVLPPSIAVPLLEVSEHLGLPPVLTYADL  119

Query  126  CLWNYKPIFPDEPAYDLDNLACINTLTGSLDERWFYLVSVGIEARGAPAIPLVLQAISAA  185
             LWN+KPI   E   DLDNL  +NT TG+ DE WFYLVSV IEARGAPA+PL+LQAI AA
Sbjct  120  VLWNWKPIDGPEDPMDLDNLRILNTFTGTEDESWFYLVSVAIEARGAPALPLMLQAIDAA  179

Query  186  RTGNSRVVTECLQSIAEILDQIGVLLERMYEHCDPYVFYHRIRPYLAGSKNMADAGLPNG  245
            R G++  VT  LQS+AE++D++G+LL RMYEHCDP+VFYHRIRP+LAGSKNMADAGLPNG
Sbjct  180  RDGDAARVTSALQSLAEVIDELGLLLMRMYEHCDPHVFYHRIRPFLAGSKNMADAGLPNG  239

Query  246  LLYDDGSEEPEYRQYGGGSNAQSSLIQFFDIALGIEHRPTGETRPASTPSEDEKEGVTGA  305
            ++Y+    E E RQY GGS AQSSLIQFFDI LG+EH PT  +  +S             
Sbjct  240  VIYEGV--EGEPRQYSGGSAAQSSLIQFFDIFLGVEHSPTSPSPKSS-------------  284

Query  306  PRHGFIQEMRTYMPGPHRRFLEHVSAVANIREYVEARRSDKALCLAYDACLAMLRAMRDK  365
                F+Q MR YMPGPHRRFLEH+ +V +IRE+V +    K+L  AY+AC+A L+  RDK
Sbjct  285  -SASFLQRMRDYMPGPHRRFLEHLESVPSIREFVLSCGDLKSLREAYNACVAALKRFRDK  343

Query  366  HIQMVSRYIIIPARDARNRTPETSNARRPSITMNLANVRPGSKKLRGTGGTALIPFLKQA  425
            HIQ+V+RYIIIPAR A  +     ++   + T   A   P  K+L+GTGGT LIPFLKQ 
Sbjct  344  HIQIVTRYIIIPARRAPPK----QSSDLETSTRAPAAAEPSEKELKGTGGTDLIPFLKQV  399

Query  426  RDETGEP  432
            RDETGE 
Sbjct  400  RDETGEA  406



Lambda      K        H        a         alpha
   0.319    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00023099

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460123 pfam01231, IDO, Indoleamine 2,3-dioxygenase                549     0.0  


>CDD:460123 pfam01231, IDO, Indoleamine 2,3-dioxygenase.  
Length=406

 Score = 549 bits (1417),  Expect = 0.0, Method: Composition-based stats.
 Identities = 197/337 (58%), Positives = 242/337 (72%), Gaps = 20/337 (6%)

Query  8    SQRIPPQLTIPLLEVCDHLELPPVATYAAVCLWNYKPIFPDEPAYDLDNLACINTLTGSL  67
            S+ +PP + +PLLEV +HL LPPV TYA + LWN+KPI   E   DLDNL  +NT TG+ 
Sbjct  90   SEVLPPSIAVPLLEVSEHLGLPPVLTYADLVLWNWKPIDGPEDPMDLDNLRILNTFTGTE  149

Query  68   DERWFYLVSVGIEARGAPAIPLVLQAISAARTGNSRVVTECLQSIAEILDQIGVLLERMY  127
            DE WFYLVSV IEARGAPA+PL+LQAI AAR G++  VT  LQS+AE++D++G+LL RMY
Sbjct  150  DESWFYLVSVAIEARGAPALPLMLQAIDAARDGDAARVTSALQSLAEVIDELGLLLMRMY  209

Query  128  EHCDPYVFYHRIRPYLAGSKNMADAGLPNGLLYDDGSEEPEYRQYGGGSNAQSSLIQFFD  187
            EHCDP+VFYHRIRP+LAGSKNMADAGLPNG++Y+    E E RQY GGS AQSSLIQFFD
Sbjct  210  EHCDPHVFYHRIRPFLAGSKNMADAGLPNGVIYEGV--EGEPRQYSGGSAAQSSLIQFFD  267

Query  188  IALGIEHRPTGETRPASTPSEDEKEGVTGAPRHGFIQEMRTYMPGPHRRFLEHVSAVANI  247
            I LG+EH PT  +  +S                 F+Q MR YMPGPHRRFLEH+ +V +I
Sbjct  268  IFLGVEHSPTSPSPKSS--------------SASFLQRMRDYMPGPHRRFLEHLESVPSI  313

Query  248  REYVEARRSDKALCLAYDACLAMLRAMRDKHIQMVSRYIIIPARDARNRTPETSNARRPS  307
            RE+V +    K+L  AY+AC+A L+  RDKHIQ+V+RYIIIPAR A  +     ++   +
Sbjct  314  REFVLSCGDLKSLREAYNACVAALKRFRDKHIQIVTRYIIIPARRAPPK----QSSDLET  369

Query  308  ITMNLANVRPGSKKLRGTGGTALIPFLKQARDETGEP  344
             T   A   P  K+L+GTGGT LIPFLKQ RDETGE 
Sbjct  370  STRAPAAAEPSEKELKGTGGTDLIPFLKQVRDETGEA  406



Lambda      K        H        a         alpha
   0.319    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00027480

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460123 pfam01231, IDO, Indoleamine 2,3-dioxygenase                549     0.0  


>CDD:460123 pfam01231, IDO, Indoleamine 2,3-dioxygenase.  
Length=406

 Score = 549 bits (1417),  Expect = 0.0, Method: Composition-based stats.
 Identities = 197/337 (58%), Positives = 242/337 (72%), Gaps = 20/337 (6%)

Query  8    SQRIPPQLTIPLLEVCDHLELPPVATYAAVCLWNYKPIFPDEPAYDLDNLACINTLTGSL  67
            S+ +PP + +PLLEV +HL LPPV TYA + LWN+KPI   E   DLDNL  +NT TG+ 
Sbjct  90   SEVLPPSIAVPLLEVSEHLGLPPVLTYADLVLWNWKPIDGPEDPMDLDNLRILNTFTGTE  149

Query  68   DERWFYLVSVGIEARGAPAIPLVLQAISAARTGNSRVVTECLQSIAEILDQIGVLLERMY  127
            DE WFYLVSV IEARGAPA+PL+LQAI AAR G++  VT  LQS+AE++D++G+LL RMY
Sbjct  150  DESWFYLVSVAIEARGAPALPLMLQAIDAARDGDAARVTSALQSLAEVIDELGLLLMRMY  209

Query  128  EHCDPYVFYHRIRPYLAGSKNMADAGLPNGLLYDDGSEEPEYRQYGGGSNAQSSLIQFFD  187
            EHCDP+VFYHRIRP+LAGSKNMADAGLPNG++Y+    E E RQY GGS AQSSLIQFFD
Sbjct  210  EHCDPHVFYHRIRPFLAGSKNMADAGLPNGVIYEGV--EGEPRQYSGGSAAQSSLIQFFD  267

Query  188  IALGIEHRPTGETRPASTPSEDEKEGVTGAPRHGFIQEMRTYMPGPHRRFLEHVSAVANI  247
            I LG+EH PT  +  +S                 F+Q MR YMPGPHRRFLEH+ +V +I
Sbjct  268  IFLGVEHSPTSPSPKSS--------------SASFLQRMRDYMPGPHRRFLEHLESVPSI  313

Query  248  REYVEARRSDKALCLAYDACLAMLRAMRDKHIQMVSRYIIIPARDARNRTPETSNARRPS  307
            RE+V +    K+L  AY+AC+A L+  RDKHIQ+V+RYIIIPAR A  +     ++   +
Sbjct  314  REFVLSCGDLKSLREAYNACVAALKRFRDKHIQIVTRYIIIPARRAPPK----QSSDLET  369

Query  308  ITMNLANVRPGSKKLRGTGGTALIPFLKQARDETGEP  344
             T   A   P  K+L+GTGGT LIPFLKQ RDETGE 
Sbjct  370  STRAPAAAEPSEKELKGTGGTDLIPFLKQVRDETGEA  406



Lambda      K        H        a         alpha
   0.319    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00023100

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460123 pfam01231, IDO, Indoleamine 2,3-dioxygenase                549     0.0  


>CDD:460123 pfam01231, IDO, Indoleamine 2,3-dioxygenase.  
Length=406

 Score = 549 bits (1417),  Expect = 0.0, Method: Composition-based stats.
 Identities = 197/337 (58%), Positives = 242/337 (72%), Gaps = 20/337 (6%)

Query  8    SQRIPPQLTIPLLEVCDHLELPPVATYAAVCLWNYKPIFPDEPAYDLDNLACINTLTGSL  67
            S+ +PP + +PLLEV +HL LPPV TYA + LWN+KPI   E   DLDNL  +NT TG+ 
Sbjct  90   SEVLPPSIAVPLLEVSEHLGLPPVLTYADLVLWNWKPIDGPEDPMDLDNLRILNTFTGTE  149

Query  68   DERWFYLVSVGIEARGAPAIPLVLQAISAARTGNSRVVTECLQSIAEILDQIGVLLERMY  127
            DE WFYLVSV IEARGAPA+PL+LQAI AAR G++  VT  LQS+AE++D++G+LL RMY
Sbjct  150  DESWFYLVSVAIEARGAPALPLMLQAIDAARDGDAARVTSALQSLAEVIDELGLLLMRMY  209

Query  128  EHCDPYVFYHRIRPYLAGSKNMADAGLPNGLLYDDGSEEPEYRQYGGGSNAQSSLIQFFD  187
            EHCDP+VFYHRIRP+LAGSKNMADAGLPNG++Y+    E E RQY GGS AQSSLIQFFD
Sbjct  210  EHCDPHVFYHRIRPFLAGSKNMADAGLPNGVIYEGV--EGEPRQYSGGSAAQSSLIQFFD  267

Query  188  IALGIEHRPTGETRPASTPSEDEKEGVTGAPRHGFIQEMRTYMPGPHRRFLEHVSAVANI  247
            I LG+EH PT  +  +S                 F+Q MR YMPGPHRRFLEH+ +V +I
Sbjct  268  IFLGVEHSPTSPSPKSS--------------SASFLQRMRDYMPGPHRRFLEHLESVPSI  313

Query  248  REYVEARRSDKALCLAYDACLAMLRAMRDKHIQMVSRYIIIPARDARNRTPETSNARRPS  307
            RE+V +    K+L  AY+AC+A L+  RDKHIQ+V+RYIIIPAR A  +     ++   +
Sbjct  314  REFVLSCGDLKSLREAYNACVAALKRFRDKHIQIVTRYIIIPARRAPPK----QSSDLET  369

Query  308  ITMNLANVRPGSKKLRGTGGTALIPFLKQARDETGEP  344
             T   A   P  K+L+GTGGT LIPFLKQ RDETGE 
Sbjct  370  STRAPAAAEPSEKELKGTGGTDLIPFLKQVRDETGEA  406



Lambda      K        H        a         alpha
   0.319    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00023101

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460123 pfam01231, IDO, Indoleamine 2,3-dioxygenase                549     0.0  


>CDD:460123 pfam01231, IDO, Indoleamine 2,3-dioxygenase.  
Length=406

 Score = 549 bits (1417),  Expect = 0.0, Method: Composition-based stats.
 Identities = 197/337 (58%), Positives = 242/337 (72%), Gaps = 20/337 (6%)

Query  8    SQRIPPQLTIPLLEVCDHLELPPVATYAAVCLWNYKPIFPDEPAYDLDNLACINTLTGSL  67
            S+ +PP + +PLLEV +HL LPPV TYA + LWN+KPI   E   DLDNL  +NT TG+ 
Sbjct  90   SEVLPPSIAVPLLEVSEHLGLPPVLTYADLVLWNWKPIDGPEDPMDLDNLRILNTFTGTE  149

Query  68   DERWFYLVSVGIEARGAPAIPLVLQAISAARTGNSRVVTECLQSIAEILDQIGVLLERMY  127
            DE WFYLVSV IEARGAPA+PL+LQAI AAR G++  VT  LQS+AE++D++G+LL RMY
Sbjct  150  DESWFYLVSVAIEARGAPALPLMLQAIDAARDGDAARVTSALQSLAEVIDELGLLLMRMY  209

Query  128  EHCDPYVFYHRIRPYLAGSKNMADAGLPNGLLYDDGSEEPEYRQYGGGSNAQSSLIQFFD  187
            EHCDP+VFYHRIRP+LAGSKNMADAGLPNG++Y+    E E RQY GGS AQSSLIQFFD
Sbjct  210  EHCDPHVFYHRIRPFLAGSKNMADAGLPNGVIYEGV--EGEPRQYSGGSAAQSSLIQFFD  267

Query  188  IALGIEHRPTGETRPASTPSEDEKEGVTGAPRHGFIQEMRTYMPGPHRRFLEHVSAVANI  247
            I LG+EH PT  +  +S                 F+Q MR YMPGPHRRFLEH+ +V +I
Sbjct  268  IFLGVEHSPTSPSPKSS--------------SASFLQRMRDYMPGPHRRFLEHLESVPSI  313

Query  248  REYVEARRSDKALCLAYDACLAMLRAMRDKHIQMVSRYIIIPARDARNRTPETSNARRPS  307
            RE+V +    K+L  AY+AC+A L+  RDKHIQ+V+RYIIIPAR A  +     ++   +
Sbjct  314  REFVLSCGDLKSLREAYNACVAALKRFRDKHIQIVTRYIIIPARRAPPK----QSSDLET  369

Query  308  ITMNLANVRPGSKKLRGTGGTALIPFLKQARDETGEP  344
             T   A   P  K+L+GTGGT LIPFLKQ RDETGE 
Sbjct  370  STRAPAAAEPSEKELKGTGGTDLIPFLKQVRDETGEA  406



Lambda      K        H        a         alpha
   0.319    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00023103

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460123 pfam01231, IDO, Indoleamine 2,3-dioxygenase                661     0.0  


>CDD:460123 pfam01231, IDO, Indoleamine 2,3-dioxygenase.  
Length=406

 Score = 661 bits (1708),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/427 (59%), Positives = 305/427 (71%), Gaps = 22/427 (5%)

Query  7    ALADYGVSPDHGFLPPEPPLEALPDPYYAKWEWIASNLQSLLHSGRIRDVVNCLPILQTR  66
            AL DY VSP+ GFLPPE PLE LPD YY  WE IA NL +L+ SGR+R VV+ LP+L T 
Sbjct  1    ALEDYDVSPETGFLPPELPLERLPD-YYEPWEAIADNLPALILSGRLRAVVDKLPVLSTD  59

Query  67   YLHSEDEWRRAYVVLTFMLHGYVWG-GKTPEERIPPQLTIPLLEVCDHLELPPVATYAAV  125
             L SE E RRA++VL F+ H YVWG G  P E +PP + +PLLEV +HL LPPV TYA +
Sbjct  60   QLESELELRRAHLVLAFLTHAYVWGEGDKPSEVLPPSIAVPLLEVSEHLGLPPVLTYADL  119

Query  126  CLWNYKPIFPDEPAYDLDNLACINTLTGSLDERWFYLVSVGIEARGAPAIPLVLQAISAA  185
             LWN+KPI   E   DLDNL  +NT TG+ DE WFYLVSV IEARGAPA+PL+LQAI AA
Sbjct  120  VLWNWKPIDGPEDPMDLDNLRILNTFTGTEDESWFYLVSVAIEARGAPALPLMLQAIDAA  179

Query  186  RTGNSRVVTECLQSIAEILDQIGVLLERMYEHCDPYVFYHRIRPYLAGSKNMADAGLPNG  245
            R G++  VT  LQS+AE++D++G+LL RMYEHCDP+VFYHRIRP+LAGSKNMADAGLPNG
Sbjct  180  RDGDAARVTSALQSLAEVIDELGLLLMRMYEHCDPHVFYHRIRPFLAGSKNMADAGLPNG  239

Query  246  LLYDDGSEEPEYRQYGGGSNAQSSLIQFFDIALGIEHRPTGETRPASTPSEDEKEGVTGA  305
            ++Y+    E E RQY GGS AQSSLIQFFDI LG+EH PT  +  +S             
Sbjct  240  VIYEGV--EGEPRQYSGGSAAQSSLIQFFDIFLGVEHSPTSPSPKSS-------------  284

Query  306  PRHGFIQEMRTYMPGPHRRFLEHVSAVANIREYVEARRSDKALCLAYDACLAMLRAMRDK  365
                F+Q MR YMPGPHRRFLEH+ +V +IRE+V +    K+L  AY+AC+A L+  RDK
Sbjct  285  -SASFLQRMRDYMPGPHRRFLEHLESVPSIREFVLSCGDLKSLREAYNACVAALKRFRDK  343

Query  366  HIQMVSRYIIIPARDARNRTPETSNARRPSITMNLANVRPGSKKLRGTGGTALIPFLKQA  425
            HIQ+V+RYIIIPAR A  +     ++   + T   A   P  K+L+GTGGT LIPFLKQ 
Sbjct  344  HIQIVTRYIIIPARRAPPK----QSSDLETSTRAPAAAEPSEKELKGTGGTDLIPFLKQV  399

Query  426  RDETGEP  432
            RDETGE 
Sbjct  400  RDETGEA  406



Lambda      K        H        a         alpha
   0.319    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00023102

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460123 pfam01231, IDO, Indoleamine 2,3-dioxygenase                661     0.0  


>CDD:460123 pfam01231, IDO, Indoleamine 2,3-dioxygenase.  
Length=406

 Score = 661 bits (1708),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/427 (59%), Positives = 305/427 (71%), Gaps = 22/427 (5%)

Query  7    ALADYGVSPDHGFLPPEPPLEALPDPYYAKWEWIASNLQSLLHSGRIRDVVNCLPILQTR  66
            AL DY VSP+ GFLPPE PLE LPD YY  WE IA NL +L+ SGR+R VV+ LP+L T 
Sbjct  1    ALEDYDVSPETGFLPPELPLERLPD-YYEPWEAIADNLPALILSGRLRAVVDKLPVLSTD  59

Query  67   YLHSEDEWRRAYVVLTFMLHGYVWG-GKTPEERIPPQLTIPLLEVCDHLELPPVATYAAV  125
             L SE E RRA++VL F+ H YVWG G  P E +PP + +PLLEV +HL LPPV TYA +
Sbjct  60   QLESELELRRAHLVLAFLTHAYVWGEGDKPSEVLPPSIAVPLLEVSEHLGLPPVLTYADL  119

Query  126  CLWNYKPIFPDEPAYDLDNLACINTLTGSLDERWFYLVSVGIEARGAPAIPLVLQAISAA  185
             LWN+KPI   E   DLDNL  +NT TG+ DE WFYLVSV IEARGAPA+PL+LQAI AA
Sbjct  120  VLWNWKPIDGPEDPMDLDNLRILNTFTGTEDESWFYLVSVAIEARGAPALPLMLQAIDAA  179

Query  186  RTGNSRVVTECLQSIAEILDQIGVLLERMYEHCDPYVFYHRIRPYLAGSKNMADAGLPNG  245
            R G++  VT  LQS+AE++D++G+LL RMYEHCDP+VFYHRIRP+LAGSKNMADAGLPNG
Sbjct  180  RDGDAARVTSALQSLAEVIDELGLLLMRMYEHCDPHVFYHRIRPFLAGSKNMADAGLPNG  239

Query  246  LLYDDGSEEPEYRQYGGGSNAQSSLIQFFDIALGIEHRPTGETRPASTPSEDEKEGVTGA  305
            ++Y+    E E RQY GGS AQSSLIQFFDI LG+EH PT  +  +S             
Sbjct  240  VIYEGV--EGEPRQYSGGSAAQSSLIQFFDIFLGVEHSPTSPSPKSS-------------  284

Query  306  PRHGFIQEMRTYMPGPHRRFLEHVSAVANIREYVEARRSDKALCLAYDACLAMLRAMRDK  365
                F+Q MR YMPGPHRRFLEH+ +V +IRE+V +    K+L  AY+AC+A L+  RDK
Sbjct  285  -SASFLQRMRDYMPGPHRRFLEHLESVPSIREFVLSCGDLKSLREAYNACVAALKRFRDK  343

Query  366  HIQMVSRYIIIPARDARNRTPETSNARRPSITMNLANVRPGSKKLRGTGGTALIPFLKQA  425
            HIQ+V+RYIIIPAR A  +     ++   + T   A   P  K+L+GTGGT LIPFLKQ 
Sbjct  344  HIQIVTRYIIIPARRAPPK----QSSDLETSTRAPAAAEPSEKELKGTGGTDLIPFLKQV  399

Query  426  RDETGEP  432
            RDETGE 
Sbjct  400  RDETGEA  406



Lambda      K        H        a         alpha
   0.319    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00023104

Length=497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460123 pfam01231, IDO, Indoleamine 2,3-dioxygenase                652     0.0  


>CDD:460123 pfam01231, IDO, Indoleamine 2,3-dioxygenase.  
Length=406

 Score = 652 bits (1685),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/438 (58%), Positives = 305/438 (70%), Gaps = 33/438 (8%)

Query  7    ALADYGVSPDHGFLPPEPPLEALPDPYYAKWEWIASNLQSLLHSGRIRDVVNCLPILQTR  66
            AL DY VSP+ GFLPPE PLE LPD YY  WE IA NL +L+ SGR+R VV+ LP+L T 
Sbjct  1    ALEDYDVSPETGFLPPELPLERLPD-YYEPWEAIADNLPALILSGRLRAVVDKLPVLSTD  59

Query  67   YLHSEDEWRRAYVVLTFMLHGYVWG-GKTPEEVHMLTLMVDSQRIPPQLTIPLLEVCDHL  125
             L SE E RRA++VL F+ H YVWG G  P E            +PP + +PLLEV +HL
Sbjct  60   QLESELELRRAHLVLAFLTHAYVWGEGDKPSE-----------VLPPSIAVPLLEVSEHL  108

Query  126  ELPPVATYAAVCLWNYKPIFPDEPAYDLDNLACINTLTGSLDERWFYLVSVGIEARGAPA  185
             LPPV TYA + LWN+KPI   E   DLDNL  +NT TG+ DE WFYLVSV IEARGAPA
Sbjct  109  GLPPVLTYADLVLWNWKPIDGPEDPMDLDNLRILNTFTGTEDESWFYLVSVAIEARGAPA  168

Query  186  IPLVLQAISAARTGNSRVVTECLQSIAEILDQIGVLLERMYEHCDPYVFYHRIRPYLAGS  245
            +PL+LQAI AAR G++  VT  LQS+AE++D++G+LL RMYEHCDP+VFYHRIRP+LAGS
Sbjct  169  LPLMLQAIDAARDGDAARVTSALQSLAEVIDELGLLLMRMYEHCDPHVFYHRIRPFLAGS  228

Query  246  KNMADAGLPNGLLYDDGSEEPEYRQYGGGSNAQSSLIQFFDIALGIEHRPTGETRPASTP  305
            KNMADAGLPNG++Y+    E E RQY GGS AQSSLIQFFDI LG+EH PT  +  +S  
Sbjct  229  KNMADAGLPNGVIYEGV--EGEPRQYSGGSAAQSSLIQFFDIFLGVEHSPTSPSPKSS--  284

Query  306  SEDEKEGVTGAPRHGFIQEMRTYMPGPHRRFLEHVSAVANIREYVEARRSDKALCLAYDA  365
                           F+Q MR YMPGPHRRFLEH+ +V +IRE+V +    K+L  AY+A
Sbjct  285  ------------SASFLQRMRDYMPGPHRRFLEHLESVPSIREFVLSCGDLKSLREAYNA  332

Query  366  CLAMLRAMRDKHIQMVSRYIIIPARDARNRTPETSNARRPSITMNLANVRPGSKKLRGTG  425
            C+A L+  RDKHIQ+V+RYIIIPAR A  +     ++   + T   A   P  K+L+GTG
Sbjct  333  CVAALKRFRDKHIQIVTRYIIIPARRAPPK----QSSDLETSTRAPAAAEPSEKELKGTG  388

Query  426  GTALIPFLKQARDETGEP  443
            GT LIPFLKQ RDETGE 
Sbjct  389  GTDLIPFLKQVRDETGEA  406



Lambda      K        H        a         alpha
   0.320    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 614710796


Query= TCONS_00023105

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0733    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00027482

Length=277


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00027483

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  130     5e-37


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 130 bits (328),  Expect = 5e-37, Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 108/237 (46%), Gaps = 44/237 (19%)

Query  45   ALKTGYRHVDSAIMYR---NEKACGRAIQNSGLDRSEVFFTTKIPPGSMGY------ERT  95
            AL+ G   +D+A +Y    +E+  G A+++  + R +V   TK+P G   +      E  
Sbjct  27   ALEAGINFIDTAEVYGDGKSEELLGEALKDYPVKRDKVVIATKVPDGDGPWPSGGSKENI  86

Query  96   KRAVDASLQEAEVDYFDLILIHAPYGGKDARLGSWRALVEAQKAGKTRSIGVSNYGIHHL  155
            +++++ SL+    DY DL  +H P         +W AL E +K GK R+IGVSN+    +
Sbjct  87   RKSLEESLKRLGTDYIDLYYLHWPDPDTP-IEETWDALEELKKEGKIRAIGVSNFDAEQI  145

Query  156  DELEEYIKGGEGRGKIDVGQYELHPWLDR--SEIVEWLKKRDIVVEAYSPLAHG-----Y  208
            ++        +G+  I   Q E +    R   E++E+ KK  I + AYSPL  G     Y
Sbjct  146  EKALT-----KGKIPIVAVQVEYNLLRRRQEEELLEYCKKNGIPLIAYSPLGGGLLTGKY  200

Query  209  RLNEP----------------------ILKTLGKKHGKSPAQIMIRWSLQKVSVLSV  243
              +                         L+ + K+HG SPAQ+ +RW+L K  V   
Sbjct  201  TRDPDKGPGERRRLLKKGTPLNLEALEALEEIAKEHGVSPAQVALRWALSKPGVTIP  257



Lambda      K        H        a         alpha
   0.317    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00027484

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  154     3e-46


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 154 bits (392),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 75/263 (29%), Positives = 125/263 (48%), Gaps = 46/263 (17%)

Query  45   ALKTGYRHVDSAIMYR---NEKACGRAIQNSGLDRSEVFFTTKIPPGSMGY------ERT  95
            AL+ G   +D+A +Y    +E+  G A+++  + R +V   TK+P G   +      E  
Sbjct  27   ALEAGINFIDTAEVYGDGKSEELLGEALKDYPVKRDKVVIATKVPDGDGPWPSGGSKENI  86

Query  96   KRAVDASLQEAEVDYFDLILIHAPYGGKDARLGSWRALVEAQKAGKTRSIGVSNYGIHHL  155
            +++++ SL+    DY DL  +H P         +W AL E +K GK R+IGVSN+    +
Sbjct  87   RKSLEESLKRLGTDYIDLYYLHWPDPDTP-IEETWDALEELKKEGKIRAIGVSNFDAEQI  145

Query  156  DELEEYIKGGEGRGKIDVGQYELHPWLDR--SEIVEWLKKRDIVVEAYSPLAHG-----Y  208
            ++        +G+  I   Q E +    R   E++E+ KK  I + AYSPL  G     Y
Sbjct  146  EKALT-----KGKIPIVAVQVEYNLLRRRQEEELLEYCKKNGIPLIAYSPLGGGLLTGKY  200

Query  209  RLNEP----------------------ILKTLGKKHGKSPAQIMIRWSLQKGFV--PLPK  244
              +                         L+ + K+HG SPAQ+ +RW+L K  V  P+P 
Sbjct  201  TRDPDKGPGERRRLLKKGTPLNLEALEALEEIAKEHGVSPAQVALRWALSKPGVTIPIPG  260

Query  245  SVTPARILENADVFDFELSEEDM  267
            +  P ++ +N    +F LS+E++
Sbjct  261  ASNPEQLEDNLGALEFPLSDEEV  283



Lambda      K        H        a         alpha
   0.317    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00023106

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  142     3e-42


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 142 bits (361),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 69/247 (28%), Positives = 116/247 (47%), Gaps = 43/247 (17%)

Query  4    NEKACGRAIQNSGLDRSEVFFTTKIPPGSMGY------ERTKRAVDASLQEAEVDYFDLI  57
            +E+  G A+++  + R +V   TK+P G   +      E  +++++ SL+    DY DL 
Sbjct  46   SEELLGEALKDYPVKRDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLY  105

Query  58   LIHAPYGGKDARLGSWRALVEAQKAGKTRSIGVSNYGIHHLDELEEYIKGGEGRGKIDVG  117
             +H P         +W AL E +K GK R+IGVSN+    +++        +G+  I   
Sbjct  106  YLHWPDPDTP-IEETWDALEELKKEGKIRAIGVSNFDAEQIEKALT-----KGKIPIVAV  159

Query  118  QYELHPWLDR--SEIVEWLKKRDIVVEAYSPLAHG-----YRLNEP--------------  156
            Q E +    R   E++E+ KK  I + AYSPL  G     Y  +                
Sbjct  160  QVEYNLLRRRQEEELLEYCKKNGIPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGT  219

Query  157  --------ILKTLGKKHGKSPAQIMIRWSLQKGFV--PLPKSVTPARILENADVFDFELS  206
                     L+ + K+HG SPAQ+ +RW+L K  V  P+P +  P ++ +N    +F LS
Sbjct  220  PLNLEALEALEEIAKEHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLS  279

Query  207  EEDMQTL  213
            +E++  +
Sbjct  280  DEEVARI  286



Lambda      K        H        a         alpha
   0.316    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00027485

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00023107

Length=277


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00023108

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  142     3e-42


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 142 bits (361),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 69/247 (28%), Positives = 116/247 (47%), Gaps = 43/247 (17%)

Query  4    NEKACGRAIQNSGLDRSEVFFTTKIPPGSMGY------ERTKRAVDASLQEAEVDYFDLI  57
            +E+  G A+++  + R +V   TK+P G   +      E  +++++ SL+    DY DL 
Sbjct  46   SEELLGEALKDYPVKRDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLY  105

Query  58   LIHAPYGGKDARLGSWRALVEAQKAGKTRSIGVSNYGIHHLDELEEYIKGGEGRGKIDVG  117
             +H P         +W AL E +K GK R+IGVSN+    +++        +G+  I   
Sbjct  106  YLHWPDPDTP-IEETWDALEELKKEGKIRAIGVSNFDAEQIEKALT-----KGKIPIVAV  159

Query  118  QYELHPWLDR--SEIVEWLKKRDIVVEAYSPLAHG-----YRLNEP--------------  156
            Q E +    R   E++E+ KK  I + AYSPL  G     Y  +                
Sbjct  160  QVEYNLLRRRQEEELLEYCKKNGIPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGT  219

Query  157  --------ILKTLGKKHGKSPAQIMIRWSLQKGFV--PLPKSVTPARILENADVFDFELS  206
                     L+ + K+HG SPAQ+ +RW+L K  V  P+P +  P ++ +N    +F LS
Sbjct  220  PLNLEALEALEEIAKEHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLS  279

Query  207  EEDMQTL  213
            +E++  +
Sbjct  280  DEEVARI  286



Lambda      K        H        a         alpha
   0.316    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00023109

Length=277


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00027486

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  140     1e-41


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 140 bits (356),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 43/244 (18%)

Query  4    NEKACGRAIQNSGLDRSEVFFTTKIPPGSMGY------ERTKRAVDASLQEAEVDYFDLI  57
            +E+  G A+++  + R +V   TK+P G   +      E  +++++ SL+    DY DL 
Sbjct  46   SEELLGEALKDYPVKRDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLY  105

Query  58   LIHAPYGGKDARLGSWRALVEAQKAGKTRSIGVSNYGIHHLDELEEYIKGGEGRGKIDVG  117
             +H P         +W AL E +K GK R+IGVSN+    +++        +G+  I   
Sbjct  106  YLHWPDPDTP-IEETWDALEELKKEGKIRAIGVSNFDAEQIEKALT-----KGKIPIVAV  159

Query  118  QYELHPWLDR--SEIVEWLKKRDIVVEAYSPLAHG-----YRLNEP--------------  156
            Q E +    R   E++E+ KK  I + AYSPL  G     Y  +                
Sbjct  160  QVEYNLLRRRQEEELLEYCKKNGIPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGT  219

Query  157  --------ILKTLGKKHGKSPAQIMIRWSLQKGFV--PLPKSVTPARILENADVFDFELS  206
                     L+ + K+HG SPAQ+ +RW+L K  V  P+P +  P ++ +N    +F LS
Sbjct  220  PLNLEALEALEEIAKEHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDNLGALEFPLS  279

Query  207  EEDM  210
            +E++
Sbjct  280  DEEV  283



Lambda      K        H        a         alpha
   0.317    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00023111

Length=277


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00023113

Length=497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460020 pfam00995, Sec1, Sec1 family                               259     3e-81


>CDD:460020 pfam00995, Sec1, Sec1 family.  
Length=506

 Score = 259 bits (664),  Expect = 3e-81, Method: Composition-based stats.
 Identities = 123/473 (26%), Positives = 180/473 (38%), Gaps = 148/473 (31%)

Query  23   LDRKLRDHILNSKDNLFSGNKKTAAGVPSSRPVLIIVDRNVDLVPMLSHSWTYQSLVQDV  82
            L  KLRD I +                  SRPVLII+DR+VDLV  L H WTYQ+LV D+
Sbjct  175  LADKLRDKIDSFAKLS-----------SDSRPVLIILDRSVDLVTPLLHQWTYQALVHDL  223

Query  83   L-QMRLNRITVETPIDETNPAKGVTKKVYDLNSNDFFWKRNAGAPFPQVAEDIDAELTRY  141
            L  ++LNR+T+ET   E        KKV  L+S+D FW  N    F  V E +  +L  Y
Sbjct  224  LGILKLNRVTLETGGKEE------EKKVELLDSSDPFWVENRHLHFADVGEKLKKKLKEY  277

Query  142  KEDANEITKKTGASSIEDLQNDTSASAQHLKAAITLLPELRERKAILDMHMNIATALLKG  201
            K    E  K  G +SI DL           K  +  LPEL+E K  L +H N+A  LLK 
Sbjct  278  KAKNKETRKTKGIASIADL-----------KDFVAKLPELQEEKRKLSLHTNLAEELLKI  326

Query  202  IKDRQLDNFFELEENI-----TKQSKTQIMELINDPAKGSNPTDKLRLFLIWFLSTESDL  256
            IK R+LD   ELE+++     +KQ    I ELI       +P DKLRL L++ L+     
Sbjct  327  IKKRKLDELLELEQDLATGEDSKQKDKLIEELIALLDADVSPLDKLRLLLLYSLT-----  381

Query  257  SRADLSQFEEALRRAGVEDISPLTYVRQVRELTRMTMMTTAAPQQQSSDLFRGFSSLSNR  316
                  + E+  R                                               
Sbjct  382  ENGKSKELEDLKR-----------------------------------------------  394

Query  317  LTDRITSGALGANFDSLISGVKNFLPANKDLTLTKITESIMDPSSASSSAIAKTENYLYF  376
                            L+  +  ++P      LT++ E+++            +  +   
Sbjct  395  ---------------ELLQAIYGYVPL-----LTRLVEALIKGGLL-------SSEFPSL  427

Query  377  DPRSANARGAIPPASAARNPQAPGALGGVERGTSATFGQRRQAFNE-AIVFTVGGGSMDE  435
             P            SA              +  +++ G RR +F +  IVF VGG +  E
Sbjct  428  KPPDPLGADLSGSVSARS------------KSGASSGGSRRSSFRQRVIVFVVGGVTYSE  475

Query  436  YGNLQDWVRQTSGQPGDGSGAGIRAGVGAMGGARRRVVYGSTELMNANEFLTE  488
               L++  ++ +                      + ++ GST ++N N FL  
Sbjct  476  IRALRELAKKKN----------------------KEIIIGSTSILNPNSFLES  506



Lambda      K        H        a         alpha
   0.315    0.130    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 614710796


Query= TCONS_00023115

Length=98
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460020 pfam00995, Sec1, Sec1 family                               105     1e-28


>CDD:460020 pfam00995, Sec1, Sec1 family.  
Length=506

 Score = 105 bits (263),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 49/99 (49%), Positives = 61/99 (62%), Gaps = 13/99 (13%)

Query  1    MGAIPIIRCPKGGAAELIATKLDRKLRDHILNSKDNLFSGNKKTAAGVPSSRPVLIIVDR  60
            +G IPIIR  KG AAE++A KL  KLRD I +                  SRPVLII+DR
Sbjct  155  LGEIPIIRY-KGPAAEMVAKKLADKLRDKIDSFAKLS-----------SDSRPVLIILDR  202

Query  61   NVDLVPMLSHSWTYQSLVQDVL-QMRLNRITVETPIDET  98
            +VDLV  L H WTYQ+LV D+L  ++LNR+T+ET   E 
Sbjct  203  SVDLVTPLLHQWTYQALVHDLLGILKLNRVTLETGGKEE  241



Lambda      K        H        a         alpha
   0.319    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00023112

Length=646
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460020 pfam00995, Sec1, Sec1 family                               424     4e-143


>CDD:460020 pfam00995, Sec1, Sec1 family.  
Length=506

 Score = 424 bits (1092),  Expect = 4e-143, Method: Composition-based stats.
 Identities = 190/647 (29%), Positives = 271/647 (42%), Gaps = 160/647 (25%)

Query  2    GRDVISSVLRVNDLRAWGVTIHLNLNSTRYPIPDVPVVYLVEPTPANIQAITNDLSR--G  59
               ++SSVL V+DL   GVT+   +   R P+PDVP +Y V PT  NI  I  D      
Sbjct  9    TLKILSSVLTVSDLLEEGVTLVEKIEKLREPLPDVPAIYFVRPTKENIDRIAADFISSRP  68

Query  60   LYSPAYVNFLSSIPRPLLEDFASQIASTGTAEHVAQVYDQYLNFIVAEPDLFSLGLGN-D  118
             Y   ++ F S + R LLE  A         E V +V +  L+FI  E DLFSL      
Sbjct  69   KYKSYHIFFTSRLSRELLEGLAEG------DEVVKKVKEINLDFIPLESDLFSLNDPELP  122

Query  119  AYWKINSAKTSDEELDGIVDKIVSGLFSVSVTMGAIPIIRCPKGGAAELIATKLDRKLRD  178
             Y+       +D      +D+I  GL SV +T+G IPIIR  KG AAE++A KL  KLRD
Sbjct  123  LYFPSYYLDLNDPVWLDELDRIAKGLLSVCLTLGEIPIIRY-KGPAAEMVAKKLADKLRD  181

Query  179  HILNSKDNLFSGNKKTAAGVPSSRPVLIIVDRNVDLVPMLSHSWTYQSLVQDVL-QMRLN  237
             I +                  SRPVLII+DR+VDLV  L H WTYQ+LV D+L  ++LN
Sbjct  182  KIDSFAKLS-----------SDSRPVLIILDRSVDLVTPLLHQWTYQALVHDLLGILKLN  230

Query  238  RITVETPIDETNPAKGVTKKVYDLNSNDFFWKRNAGAPFPQVAEDIDAELTRYKEDANEI  297
            R+T+ET   E        KKV  L+S+D FW  N    F  V E +  +L  YK    E 
Sbjct  231  RVTLETGGKEE------EKKVELLDSSDPFWVENRHLHFADVGEKLKKKLKEYKAKNKET  284

Query  298  TKKTGASSIEDLQNDTSASAQHLKAAITLLPELRERKAILDMHMNIATALLKGIKDRQLD  357
             K  G +SI DL           K  +  LPEL+E K  L +H N+A  LLK IK R+LD
Sbjct  285  RKTKGIASIADL-----------KDFVAKLPELQEEKRKLSLHTNLAEELLKIIKKRKLD  333

Query  358  NFFELEENI-----TKQSKTQIMELINDPAKGSNPTDKLRLFLIWFLSTESDLSRADLSQ  412
               ELE+++     +KQ    I ELI       +P DKLRL L++ L+           +
Sbjct  334  ELLELEQDLATGEDSKQKDKLIEELIALLDADVSPLDKLRLLLLYSLT-----ENGKSKE  388

Query  413  FEEALRRAGVEDISPLTYVRQVRELTRMTMMTTAAPQQQSSDLFRGFSSLSNRLTDRITS  472
             E+  R                                                      
Sbjct  389  LEDLKR------------------------------------------------------  394

Query  473  GALGANFDSLISGVKNFLPANKDLTLTKITESIMD-PSSASSSAIAKTENYLYFDPRSAN  531
                     L+  +  ++P      LT++ E+++     +S     K  + L  D   + 
Sbjct  395  --------ELLQAIYGYVPL-----LTRLVEALIKGGLLSSEFPSLKPPDPLGADLSGSV  441

Query  532  ARGAIPPASAARNPQAPGALGGVERGTSATFGQRRQAFNE-AIVFTVGGGSMDEYGNLQD  590
            +  +                    +  +++ G RR +F +  IVF VGG +  E   L++
Sbjct  442  SARS--------------------KSGASSGGSRRSSFRQRVIVFVVGGVTYSEIRALRE  481

Query  591  WVRQTSGQPGDGSGAGIRAGVGAMGGARRRVVYGSTELMNANEFLTE  637
              ++ +                      + ++ GST ++N N FL  
Sbjct  482  LAKKKN----------------------KEIIIGSTSILNPNSFLES  506



Lambda      K        H        a         alpha
   0.315    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 815558870


Query= TCONS_00023114

Length=712
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460020 pfam00995, Sec1, Sec1 family                               435     1e-146


>CDD:460020 pfam00995, Sec1, Sec1 family.  
Length=506

 Score = 435 bits (1121),  Expect = 1e-146, Method: Composition-based stats.
 Identities = 194/654 (30%), Positives = 272/654 (42%), Gaps = 158/654 (24%)

Query  60   KVLVFDNMGRDVISSVLRVNDLRAWGVTIHLNLNSTRYPIPDVPVVYLVEPTPANIQAIT  119
            KVLV D     ++SSVL V+DL   GVT+   +   R P+PDVP +Y V PT  NI  I 
Sbjct  1    KVLVLDKETLKILSSVLTVSDLLEEGVTLVEKIEKLREPLPDVPAIYFVRPTKENIDRIA  60

Query  120  NDLSR--GLYSPAYVNFLSSIPRPLLEDFASQIASTGTAEHVAQVYDQYLNFIVAEPDLF  177
             D       Y   ++ F S + R LLE  A         E V +V +  L+FI  E DLF
Sbjct  61   ADFISSRPKYKSYHIFFTSRLSRELLEGLAEG------DEVVKKVKEINLDFIPLESDLF  114

Query  178  SLGLGN-DAYWKINSAKTSDEELDGIVDKIVSGLFSVSVTMGAIPIIRCPKGGAAELIAT  236
            SL       Y+       +D      +D+I  GL SV +T+G IPIIR  KG AAE++A 
Sbjct  115  SLNDPELPLYFPSYYLDLNDPVWLDELDRIAKGLLSVCLTLGEIPIIRY-KGPAAEMVAK  173

Query  237  KLDRKLRDHILNSKDNLFSGNKKTAAGVPSSRPVLIIVDRNVDLVPMLSHSWTYQSLVQD  296
            KL  KLRD I +                  SRPVLII+DR+VDLV  L H WTYQ+LV D
Sbjct  174  KLADKLRDKIDSFAKLS-----------SDSRPVLIILDRSVDLVTPLLHQWTYQALVHD  222

Query  297  VL-QMRLNRITVETPIDETNPAKGVTKKVYDLNSNDFFWKRNAGAPFPQVAEDIDAELTR  355
            +L  ++LNR+T+ET   E        KKV  L+S+D FW  N    F  V E +  +L  
Sbjct  223  LLGILKLNRVTLETGGKEE------EKKVELLDSSDPFWVENRHLHFADVGEKLKKKLKE  276

Query  356  YKEDANEITKKTGASSIEDLQNDTSASAQHLKAAITLLPELRERKAILDMHMNIATALLK  415
            YK    E  K  G +SI D           LK  +  LPEL+E K  L +H N+A  LLK
Sbjct  277  YKAKNKETRKTKGIASIAD-----------LKDFVAKLPELQEEKRKLSLHTNLAEELLK  325

Query  416  GIKDRQLDNFFELEENI-----TKQSKTQIMELINDPAKGSNPTDKLRLFLIWFLSTESD  470
             IK R+LD   ELE+++     +KQ    I ELI       +P DKLRL L++ L+    
Sbjct  326  IIKKRKLDELLELEQDLATGEDSKQKDKLIEELIALLDADVSPLDKLRLLLLYSLT----  381

Query  471  LSRADLSQFEEALRRAGVEDISPLTYVRQVRELTRMTMMTTAAPQQQSSDLFRGFSSLSN  530
                   + E+  R                                              
Sbjct  382  -ENGKSKELEDLKR----------------------------------------------  394

Query  531  RLTDRITSGALGANFDSLISGVKNFLPANKDLTLTKITESIMDPSSASSSAIAKTENYLY  590
                             L+  +  ++P      LT++ E+++            +  +  
Sbjct  395  ----------------ELLQAIYGYVPL-----LTRLVEALIKGGLL-------SSEFPS  426

Query  591  FDPRSANARGAIPPASAARNPQAPGALGGVERGTSATFGQRRQAFNE-AIVFTVGGGSMD  649
              P            SA              +  +++ G RR +F +  IVF VGG +  
Sbjct  427  LKPPDPLGADLSGSVSARS------------KSGASSGGSRRSSFRQRVIVFVVGGVTYS  474

Query  650  EYGNLQDWVRQTSGQPGDGSGAGIRAGVGAMGGARRRVVYGSTELMNANEFLTE  703
            E   L++  ++ +                      + ++ GST ++N N FL  
Sbjct  475  EIRALRELAKKKN----------------------KEIIIGSTSILNPNSFLES  506



Lambda      K        H        a         alpha
   0.315    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 912895010


Query= TCONS_00027487

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460020 pfam00995, Sec1, Sec1 family                               157     6e-46


>CDD:460020 pfam00995, Sec1, Sec1 family.  
Length=506

 Score = 157 bits (399),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 78/162 (48%), Gaps = 9/162 (6%)

Query  60   KVLVFDNMGRDVISSVLRVNDLRAWGVTIHLNLNSTRYPIPDVPVVYLVEPTPANIQAIT  119
            KVLV D     ++SSVL V+DL   GVT+   +   R P+PDVP +Y V PT  NI  I 
Sbjct  1    KVLVLDKETLKILSSVLTVSDLLEEGVTLVEKIEKLREPLPDVPAIYFVRPTKENIDRIA  60

Query  120  NDLSR--GLYSPAYVNFLSSIPRPLLEDFASQIASTGTAEHVAQVYDQYLNFIVAEPDLF  177
             D       Y   ++ F S + R LLE  A         E V +V +  L+FI  E DLF
Sbjct  61   ADFISSRPKYKSYHIFFTSRLSRELLEGLAEG------DEVVKKVKEINLDFIPLESDLF  114

Query  178  SLGLGN-DAYWKINSAKTSDEELDGIVDKIVSGLFSVSVTMG  218
            SL       Y+       +D      +D+I  GL SV +T+G
Sbjct  115  SLNDPELPLYFPSYYLDLNDPVWLDELDRIAKGLLSVCLTLG  156



Lambda      K        H        a         alpha
   0.317    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00023116

Length=89
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426608 pfam02116, STE2, Fungal pheromone mating factor STE2 GPCR  117     8e-35


>CDD:426608 pfam02116, STE2, Fungal pheromone mating factor STE2 GPCR.  
Length=276

 Score = 117 bits (296),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 51/73 (70%), Gaps = 0/73 (0%)

Query  1    MNCMVIMHAGTMDHLDWLESATNIVTTVSICFFCAVFVVKLGLAIKMRKRLGVKKFGPMR  60
            +N   I++A       WL SA+ I+   SI FF A+FVVKLGLAI+ R+ LG+K+FGPM 
Sbjct  168  LNIRAILNASDTVSYSWLYSASLILFAASINFFSAIFVVKLGLAIRTRRYLGLKQFGPMH  227

Query  61   VIFIMGCQTMTIP  73
            ++FIM CQTM IP
Sbjct  228  ILFIMSCQTMIIP  240



Lambda      K        H        a         alpha
   0.332    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00023118

Length=89
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426608 pfam02116, STE2, Fungal pheromone mating factor STE2 GPCR  117     8e-35


>CDD:426608 pfam02116, STE2, Fungal pheromone mating factor STE2 GPCR.  
Length=276

 Score = 117 bits (296),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 51/73 (70%), Gaps = 0/73 (0%)

Query  1    MNCMVIMHAGTMDHLDWLESATNIVTTVSICFFCAVFVVKLGLAIKMRKRLGVKKFGPMR  60
            +N   I++A       WL SA+ I+   SI FF A+FVVKLGLAI+ R+ LG+K+FGPM 
Sbjct  168  LNIRAILNASDTVSYSWLYSASLILFAASINFFSAIFVVKLGLAIRTRRYLGLKQFGPMH  227

Query  61   VIFIMGCQTMTIP  73
            ++FIM CQTM IP
Sbjct  228  ILFIMSCQTMIIP  240



Lambda      K        H        a         alpha
   0.332    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00023117

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426608 pfam02116, STE2, Fungal pheromone mating factor STE2 GPCR  289     3e-99


>CDD:426608 pfam02116, STE2, Fungal pheromone mating factor STE2 GPCR.  
Length=276

 Score = 289 bits (742),  Expect = 3e-99, Method: Composition-based stats.
 Identities = 124/240 (52%), Positives = 159/240 (66%), Gaps = 0/240 (0%)

Query  9    TQNITLTQSDGTTVVSSLALADDYLHYMIRLGINYGAQLGACAVLFLVLLLLTRPEKRVS  68
             QNIT T  DGT +    A  D++++Y IR  INYG Q+GAC VL LVLLLLT  EKR S
Sbjct  1    NQNITFTSPDGTPIPVPFADLDEFVNYNIRTAINYGVQIGACLVLLLVLLLLTSKEKRRS  60

Query  69   SVFVLNVSALLANIIRLGCQLSYFSTGFARMYALLAGDFSRVSRGAYAGQVMASVFFTIV  128
             VF+LN ++LL NIIR    L YF++ F+  YA   GD+SRV R  YA  + A+VF  ++
Sbjct  61   PVFILNQASLLLNIIRSILLLLYFTSPFSSFYAYFTGDYSRVPRSDYAVSIAANVFSVLL  120

Query  129  LICVEASLVLQVQVVCSNLLRQYRILLLGASTLAALVPIGVRLTYSVMNCMVIMHAGTMD  188
            +  +EASLVLQV VV S L R +RI+L   S L ALV +G R   +V+N   I++A    
Sbjct  121  VALIEASLVLQVWVVFSTLPRLWRIILTAVSALLALVTVGFRFASAVLNIRAILNASDTV  180

Query  189  HLDWLESATNIVTTVSICFFCAVFVVKLGLAIKMRKRLGVKKFGPMRVIFIMGCQTMTIP  248
               WL SA+ I+   SI FF A+FVVKLGLAI+ R+ LG+K+FGPM ++FIM CQTM IP
Sbjct  181  SYSWLYSASLILFAASINFFSAIFVVKLGLAIRTRRYLGLKQFGPMHILFIMSCQTMIIP  240



Lambda      K        H        a         alpha
   0.330    0.139    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00023119

Length=1453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain...  324     3e-101
CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain...  310     1e-93 
CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain...  285     2e-89 
CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain...  145     2e-40 
CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain...  112     1e-29 


>CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 1, represents the clamp 
domain, which a mobile domain involved in positioning the 
DNA, maintenance of the transcription bubble and positioning 
of the nascent RNA strand.
Length=320

 Score = 324 bits (833),  Expect = 3e-101, Method: Composition-based stats.
 Identities = 131/353 (37%), Positives = 186/353 (53%), Gaps = 36/353 (10%)

Query  21   PKIIKELKFGVLSNDDIVSQAVVEVSDRKFFDLEHDRAVVPHGPLDGRMGISSKTATCQT  80
             K IKE++FG+ S ++I   +V EV+  + ++          G LD RMG   K   C+T
Sbjct  1    LKKIKEIQFGIASPEEIRKWSVGEVTKPETYN-YGSLKPEEGGLLDERMGTIDKDYECET  59

Query  81   CGGSLQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSRILLPEAERRAFLREMRR  140
            CG   + C GHFGH+ L  P FH+G+FK+ + IL+ +CK CS++LL   + + F ++ +R
Sbjct  60   CGKKKKDCPGHFGHIELAKPVFHIGFFKKTLKILECVCKYCSKLLLDPGKPKLFNKDKKR  119

Query  141  PGLDNLRRLQIAKRVNERCRKTRTCEACGAINGVVKKAGNSALKITHDKFRAFNVSTSVK  200
             GL+NL+    AK + E C+K   CE CG  NGV                          
Sbjct  120  LGLENLK--MGAKAILELCKKKDLCEHCGGKNGVCGSQ----------------------  155

Query  201  KVPPPSKIVFDRSFDEARTSNPEVEKHYKKAQDDMNALRVLNLFKKVSDTDCELLGLNPK  260
               P S+         A   + E E+      + +N  +VL +FK++SD D E+LG NP 
Sbjct  156  --QPVSRKEG-LKLKAAIKKSKEEEEK-----EILNPEKVLKIFKRISDEDVEILGFNPS  207

Query  261  EARPEMFLWQFIPAPPVCIRPSVGQDAAST-EDDLTAKLGDIVQSNINLKNALMKGAPVQ  319
             +RPE  +   +P PP CIRPSV  D     EDDLT KL DI++ N  LK  L  GAP  
Sbjct  208  GSRPEWMILTVLPVPPPCIRPSVQLDGGRRAEDDLTHKLRDIIKRNNRLKKLLELGAPSH  267

Query  320  TIVECWDYMQLQIAVYINSDVPGLNKADL--GKPIRGFVQRLKGKQGRFRGNL  370
             I E W  +Q  +A   ++++PGL  A     +P++   QRLKGK+GRFRGNL
Sbjct  268  IIREEWRLLQEHVATLFDNEIPGLPPALQKSKRPLKSISQRLKGKEGRFRGNL  320


>CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 5, represents the discontinuous 
cleft domain that is required to from the central 
cleft or channel where the DNA is bound.
Length=516

 Score = 310 bits (797),  Expect = 1e-93, Method: Composition-based stats.
 Identities = 167/551 (30%), Positives = 235/551 (43%), Gaps = 78/551 (14%)

Query  856   GLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSDAIVQF  915
             GL P EF FH M GREGL+DTAVKTAE+GY+ RRL+K+LEDL   YDDTVRNS   IVQF
Sbjct  1     GLTPQEFFFHTMGGREGLIDTAVKTAESGYLQRRLVKALEDLVVTYDDTVRNSGGEIVQF  60

Query  916   QYGDDKLDPVDMEGKAKPVHFDRTFIHAESITYDNDERSLLPHEIMEVCEEMLSKERAKL  975
              YG+D LDP+ +E + +               + ND        ++     +  K+   +
Sbjct  61    LYGEDGLDPLKIEKQGRFTIEFSD--LKLEDKFKNDLLD---DLLLLSEFSLSYKKEILV  115

Query  976   VREDLLGNKLAYMDRSDHGVDQFESARDFLESIQQYISSKADKLISRGGDIDPSDERSQK  1035
                 L  ++L           +    R  L       S    K +           RS+ 
Sbjct  116   RDSKLGRDRL----------SKEAQERATLLFELLLKSGLESKRV-----------RSEL  154

Query  1036  GLNHTGKLTEKTLRTFITSCLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGV  1095
                       K     +    + Y+++ + PG AVG + AQSIGEPGTQMTL TFHFAGV
Sbjct  155   ------TCNSKAFVCLLCYGRLLYQQSLINPGEAVGIIAAQSIGEPGTQMTLNTFHFAGV  208

Query  1096  AGMSITQGVPRIKEIINASKEISTPVISCDLV--TKDNVIAARIVKGRIEKTYLRDII--  1151
             A  ++T GVPR+KEIIN SK I +P ++  L       +  A+ V G IEK  L  ++  
Sbjct  209   ASKNVTLGVPRLKEIINVSKNIKSPSLTVYLFDEVGRELEKAKKVYGAIEKVTLGSVVES  268

Query  1152  -----------HYVREAWTGKEAYLTVKINWET---IQNLALELKIRNIVDAIKNHKRFK  1197
                          +     G   +  +         I      L +   +  I N    K
Sbjct  269   GEILYDPDPFNTPIISDVKGVVKFFDIIDEVTNEEEIDPETGLLILVIRLLKILNKSIKK  328

Query  1198  ---------ADDLKFRSTNSHIHIYMDIDPASKASLSKTEI----------AATSADPFL  1238
                      +   K       I I             K                  DP L
Sbjct  329   VVKSEVIPRSIRNKVDEGRD-IAIGEIT-AFIIKISKKIRQDTGGLRRVDELFMEEDPKL  386

Query  1239  RLKHLKRILPDIQVLGHPQANRAIIRTDD---TSSTNTLLVEGYGLKECMTTLG-VNGLR  1294
                 +  +L +I + G P   R ++  DD         L  EG  L   +   G V+  R
Sbjct  387   A-ILVASLLGNITLRGIPGIKRILVNEDDKGKVEPDWVLETEGVNLLRVLLVPGFVDAGR  445

Query  1295  TSTNNVMEMRDVLGIEAARVTIVQEISEVMKDMG--IDPRHMQLLADVMTYKGEVLGITR  1352
               +N++ E+ ++LGIEAAR  ++ EI  V +  G  I+ RH++L+AD MT KG ++ I R
Sbjct  446   ILSNDIHEILEILGIEAARNALLNEIRNVYRFQGIYINDRHLELIADQMTRKGYIMAIGR  505

Query  1353  FGLAKMRDSVL  1363
              G+ K   S L
Sbjct  506   HGINKAELSAL  516


>CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 2, contains the active 
site. The invariant motif -NADFDGD- binds the active site 
magnesium ion.
Length=166

 Score = 285 bits (731),  Expect = 2e-89, Method: Composition-based stats.
 Identities = 103/168 (61%), Positives = 129/168 (77%), Gaps = 2/168 (1%)

Query  372  GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG  431
            GKRVDFS RTVISPDPNL++DEV VP   AK +T+PE+VT YN ++L+Q V NG   +PG
Sbjct  1    GKRVDFSARTVISPDPNLKLDEVGVPISFAKTLTFPEIVTPYNIKRLRQLVENGPNVYPG  60

Query  432  ANYIIKKGSDFKLFLKYGNLNMIADQIQEGDVIERHIEDGDIVLFNRQPSLHKLSILSHF  491
            ANYII+  +  +  L+Y    +   +++ GD++ERH+ DGD+VLFNRQPSLH+LSI+ H 
Sbjct  61   ANYIIRI-NGARRDLRYQKRRL-DKELEIGDIVERHVIDGDVVLFNRQPSLHRLSIMGHR  118

Query  492  AKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGV  539
             +V P +TFRLN  V  PYNADFDGDEMNLHVPQ+EEARAEA ELM V
Sbjct  119  VRVLPGKTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAEAEELMLV  166


>CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 3, represents the pore 
domain. The 3' end of RNA is positioned close to this domain. 
The pore delimited by this domain is thought to act as 
a channel through which nucleotides enter the active site and/or 
where the 3' end of the RNA may be extruded during back-tracking.
Length=158

 Score = 145 bits (367),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 65/178 (37%), Positives = 101/178 (57%), Gaps = 21/178 (12%)

Query  542  NLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPETRFDLPPPAVLK  601
            N+ +P+NG+PII   QD +  AY+L+ +D FFDR    Q+ +Y         LP PA+LK
Sbjct  1    NILSPQNGKPIIGPSQDMVLGAYLLTREDTFFDREEVMQLLMYG------IVLPHPAILK  54

Query  602  P-QMLWTGKQVFNILMRPNKDDPVLVNLDAACREFKPPKDGRPKDLDPNDGWLVIRNSEV  660
            P + LWTGKQ F+ L+         +N     +          +DL  ND +++I N E+
Sbjct  55   PIKPLWTGKQTFSRLLPNE------INPKGKPKT-------NEEDLCENDSYVLINNGEL  101

Query  661  MCGVMDKATIGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFTNMGFSIGITDV  718
            + GV+DK T+G     ++ +I+ +++GP   A+ ++RL KL  R+ T  GFSIGI D+
Sbjct  102  ISGVIDKKTVG-KSLGSLIHIIYKEYGPEETAKFLDRLQKLGFRYLTKSGFSIGIDDI  158


>CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 4, represents the funnel 
domain. The funnel contain the binding site for some elongation 
factors.
Length=108

 Score = 112 bits (282),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 44/103 (43%), Positives = 60/103 (58%), Gaps = 0/103 (0%)

Query  747  KAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECIAQLSKYNSPLIMATSGSKGSSIN  806
            + G LE   G    ++ E  ++ IL+K R  AG+     L   NS  +MA SG+KGS IN
Sbjct  6    RYGKLEDIWGMTLEESFEALINNILNKARDPAGNIASKSLDPNNSIYMMADSGAKGSIIN  65

Query  807  VSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFV  849
            +SQ+    GQQ + G+R+  GF  RTLPHF K+   P S+GFV
Sbjct  66   ISQIAGCRGQQNVEGKRIPFGFSGRTLPHFKKDDEGPESRGFV  108



Lambda      K        H        a         alpha
   0.319    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1837326548


Query= TCONS_00027488

Length=794
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  221     3e-68
CDD:461905 pfam06421, LepA_C, GTP-binding protein LepA C-terminus...  203     1e-62
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  86.1    5e-21


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 221 bits (566),  Expect = 3e-68, Method: Composition-based stats.
 Identities = 77/191 (40%), Positives = 106/191 (55%), Gaps = 16/191 (8%)

Query  196  ERYRNFCIVAHVDHGKSTLSDRLLELTGTIEPGSNKQ-----VLDKLDVERERGITVKAQ  250
            +R+RN  I+ HVDHGK+TL+DRLL  TG I      +      LD L  ERERGIT+K+ 
Sbjct  1    KRHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSA  60

Query  251  TCSMIYNHNGEDYLLHLVDTPGHVDFRAEVSRSYASCGGALLLVDASQGIQAQTVANFYL  310
              S       +DYL++L+DTPGHVDF  EV R  A   GA+L+VDA +G+  QT  +  L
Sbjct  61   AVSFET----KDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVEGVMPQTREHLRL  116

Query  311  AFAQGLELIPVINKVDLPS-AEPERALEQMKNSF------ELDTENAVMVSAKTGLNVEK  363
            A   G+ +I  INK+D    AE E  +E++          + +    V  SA  G  V+ 
Sbjct  117  ARQLGVPIIVFINKMDRVDGAELEEVVEEVSRELLEKYGEDGEFVPVVPGSALKGEGVQT  176

Query  364  LLPTVIEKIPA  374
            LL  + E +P+
Sbjct  177  LLDALDEYLPS  187


>CDD:461905 pfam06421, LepA_C, GTP-binding protein LepA C-terminus.  This 
family consists of the C-terminal region of several pro- and 
eukaryotic GTP-binding LepA proteins.
Length=107

 Score = 203 bits (519),  Expect = 1e-62, Method: Composition-based stats.
 Identities = 62/106 (58%), Positives = 78/106 (74%), Gaps = 0/106 (0%)

Query  687  VNKAPVDAVARIVHSSQVERLGRQWVTKFKEHVDRQLFEVVIQAAVGKKIIARETVKPYR  746
            +N  PVDA++ IVH S+  R GR  V K KE + RQ FEV IQAA+G KIIARET+K  R
Sbjct  1    INGEPVDALSFIVHRSKAYRRGRALVEKLKELIPRQQFEVPIQAAIGGKIIARETIKALR  60

Query  747  KDVLAKLHASDVSRRRKLLEKQKEGRKRLRAVGNVVIEHKAFQAFL  792
            KDV AK +  D+SR++KLLEKQKEG+KR++ +GNV I  +AF A L
Sbjct  61   KDVTAKCYGGDISRKKKLLEKQKEGKKRMKQIGNVEIPQEAFLAVL  106


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 86.1 bits (214),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 29/88 (33%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query  597  EIQEPYVLATLTFPEEYLGKVIELCEANRGEQKSLEYFTPTQVILKYELPLAQLVDDFFG  656
             + EP    T+  PEEY+G VI    + RGE   ++     +V+++ E+PLA+L   F  
Sbjct  1    VLLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGGRVVIEAEVPLAELF-GFAT  59

Query  657  KLKGSTKGYASLDYEESAWQTGNIVKLQ  684
            +L+  TKG  S   E S +Q      L 
Sbjct  60   ELRSLTKGRGSFSMEFSGYQPVPGDILD  87



Lambda      K        H        a         alpha
   0.320    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1018606400


Query= TCONS_00023120

Length=741
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  220     2e-68
CDD:461905 pfam06421, LepA_C, GTP-binding protein LepA C-terminus...  202     2e-62
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  86.1    5e-21


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 220 bits (564),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 77/191 (40%), Positives = 106/191 (55%), Gaps = 16/191 (8%)

Query  143  ERYRNFCIVAHVDHGKSTLSDRLLELTGTIEPGSNKQ-----VLDKLDVERERGITVKAQ  197
            +R+RN  I+ HVDHGK+TL+DRLL  TG I      +      LD L  ERERGIT+K+ 
Sbjct  1    KRHRNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSA  60

Query  198  TCSMIYNHNGEDYLLHLVDTPGHVDFRAEVSRSYASCGGALLLVDASQGIQAQTVANFYL  257
              S       +DYL++L+DTPGHVDF  EV R  A   GA+L+VDA +G+  QT  +  L
Sbjct  61   AVSFET----KDYLINLIDTPGHVDFVKEVIRGLAQADGAILVVDAVEGVMPQTREHLRL  116

Query  258  AFAQGLELIPVINKVDLPS-AEPERALEQMKNSF------ELDTENAVMVSAKTGLNVEK  310
            A   G+ +I  INK+D    AE E  +E++          + +    V  SA  G  V+ 
Sbjct  117  ARQLGVPIIVFINKMDRVDGAELEEVVEEVSRELLEKYGEDGEFVPVVPGSALKGEGVQT  176

Query  311  LLPTVIEKIPA  321
            LL  + E +P+
Sbjct  177  LLDALDEYLPS  187


>CDD:461905 pfam06421, LepA_C, GTP-binding protein LepA C-terminus.  This 
family consists of the C-terminal region of several pro- and 
eukaryotic GTP-binding LepA proteins.
Length=107

 Score = 202 bits (516),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 62/106 (58%), Positives = 78/106 (74%), Gaps = 0/106 (0%)

Query  634  VNKAPVDAVARIVHSSQVERLGRQWVTKFKEHVDRQLFEVVIQAAVGKKIIARETVKPYR  693
            +N  PVDA++ IVH S+  R GR  V K KE + RQ FEV IQAA+G KIIARET+K  R
Sbjct  1    INGEPVDALSFIVHRSKAYRRGRALVEKLKELIPRQQFEVPIQAAIGGKIIARETIKALR  60

Query  694  KDVLAKLHASDVSRRRKLLEKQKEGRKRLRAVGNVVIEHKAFQAFL  739
            KDV AK +  D+SR++KLLEKQKEG+KR++ +GNV I  +AF A L
Sbjct  61   KDVTAKCYGGDISRKKKLLEKQKEGKKRMKQIGNVEIPQEAFLAVL  106


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 86.1 bits (214),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 29/88 (33%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query  544  EIQEPYVLATLTFPEEYLGKVIELCEANRGEQKSLEYFTPTQVILKYELPLAQLVDDFFG  603
             + EP    T+  PEEY+G VI    + RGE   ++     +V+++ E+PLA+L   F  
Sbjct  1    VLLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGGRVVIEAEVPLAELF-GFAT  59

Query  604  KLKGSTKGYASLDYEESAWQTGNIVKLQ  631
            +L+  TKG  S   E S +Q      L 
Sbjct  60   ELRSLTKGRGSFSMEFSGYQPVPGDILD  87



Lambda      K        H        a         alpha
   0.319    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 941483344


Query= TCONS_00023121

Length=1453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain...  324     3e-101
CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain...  310     1e-93 
CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain...  285     2e-89 
CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain...  145     2e-40 
CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain...  112     1e-29 


>CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 1, represents the clamp 
domain, which a mobile domain involved in positioning the 
DNA, maintenance of the transcription bubble and positioning 
of the nascent RNA strand.
Length=320

 Score = 324 bits (833),  Expect = 3e-101, Method: Composition-based stats.
 Identities = 131/353 (37%), Positives = 186/353 (53%), Gaps = 36/353 (10%)

Query  21   PKIIKELKFGVLSNDDIVSQAVVEVSDRKFFDLEHDRAVVPHGPLDGRMGISSKTATCQT  80
             K IKE++FG+ S ++I   +V EV+  + ++          G LD RMG   K   C+T
Sbjct  1    LKKIKEIQFGIASPEEIRKWSVGEVTKPETYN-YGSLKPEEGGLLDERMGTIDKDYECET  59

Query  81   CGGSLQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSRILLPEAERRAFLREMRR  140
            CG   + C GHFGH+ L  P FH+G+FK+ + IL+ +CK CS++LL   + + F ++ +R
Sbjct  60   CGKKKKDCPGHFGHIELAKPVFHIGFFKKTLKILECVCKYCSKLLLDPGKPKLFNKDKKR  119

Query  141  PGLDNLRRLQIAKRVNERCRKTRTCEACGAINGVVKKAGNSALKITHDKFRAFNVSTSVK  200
             GL+NL+    AK + E C+K   CE CG  NGV                          
Sbjct  120  LGLENLK--MGAKAILELCKKKDLCEHCGGKNGVCGSQ----------------------  155

Query  201  KVPPPSKIVFDRSFDEARTSNPEVEKHYKKAQDDMNALRVLNLFKKVSDTDCELLGLNPK  260
               P S+         A   + E E+      + +N  +VL +FK++SD D E+LG NP 
Sbjct  156  --QPVSRKEG-LKLKAAIKKSKEEEEK-----EILNPEKVLKIFKRISDEDVEILGFNPS  207

Query  261  EARPEMFLWQFIPAPPVCIRPSVGQDAAST-EDDLTAKLGDIVQSNINLKNALMKGAPVQ  319
             +RPE  +   +P PP CIRPSV  D     EDDLT KL DI++ N  LK  L  GAP  
Sbjct  208  GSRPEWMILTVLPVPPPCIRPSVQLDGGRRAEDDLTHKLRDIIKRNNRLKKLLELGAPSH  267

Query  320  TIVECWDYMQLQIAVYINSDVPGLNKADL--GKPIRGFVQRLKGKQGRFRGNL  370
             I E W  +Q  +A   ++++PGL  A     +P++   QRLKGK+GRFRGNL
Sbjct  268  IIREEWRLLQEHVATLFDNEIPGLPPALQKSKRPLKSISQRLKGKEGRFRGNL  320


>CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 5, represents the discontinuous 
cleft domain that is required to from the central 
cleft or channel where the DNA is bound.
Length=516

 Score = 310 bits (797),  Expect = 1e-93, Method: Composition-based stats.
 Identities = 167/551 (30%), Positives = 235/551 (43%), Gaps = 78/551 (14%)

Query  856   GLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSDAIVQF  915
             GL P EF FH M GREGL+DTAVKTAE+GY+ RRL+K+LEDL   YDDTVRNS   IVQF
Sbjct  1     GLTPQEFFFHTMGGREGLIDTAVKTAESGYLQRRLVKALEDLVVTYDDTVRNSGGEIVQF  60

Query  916   QYGDDKLDPVDMEGKAKPVHFDRTFIHAESITYDNDERSLLPHEIMEVCEEMLSKERAKL  975
              YG+D LDP+ +E + +               + ND        ++     +  K+   +
Sbjct  61    LYGEDGLDPLKIEKQGRFTIEFSD--LKLEDKFKNDLLD---DLLLLSEFSLSYKKEILV  115

Query  976   VREDLLGNKLAYMDRSDHGVDQFESARDFLESIQQYISSKADKLISRGGDIDPSDERSQK  1035
                 L  ++L           +    R  L       S    K +           RS+ 
Sbjct  116   RDSKLGRDRL----------SKEAQERATLLFELLLKSGLESKRV-----------RSEL  154

Query  1036  GLNHTGKLTEKTLRTFITSCLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGV  1095
                       K     +    + Y+++ + PG AVG + AQSIGEPGTQMTL TFHFAGV
Sbjct  155   ------TCNSKAFVCLLCYGRLLYQQSLINPGEAVGIIAAQSIGEPGTQMTLNTFHFAGV  208

Query  1096  AGMSITQGVPRIKEIINASKEISTPVISCDLV--TKDNVIAARIVKGRIEKTYLRDII--  1151
             A  ++T GVPR+KEIIN SK I +P ++  L       +  A+ V G IEK  L  ++  
Sbjct  209   ASKNVTLGVPRLKEIINVSKNIKSPSLTVYLFDEVGRELEKAKKVYGAIEKVTLGSVVES  268

Query  1152  -----------HYVREAWTGKEAYLTVKINWET---IQNLALELKIRNIVDAIKNHKRFK  1197
                          +     G   +  +         I      L +   +  I N    K
Sbjct  269   GEILYDPDPFNTPIISDVKGVVKFFDIIDEVTNEEEIDPETGLLILVIRLLKILNKSIKK  328

Query  1198  ---------ADDLKFRSTNSHIHIYMDIDPASKASLSKTEI----------AATSADPFL  1238
                      +   K       I I             K                  DP L
Sbjct  329   VVKSEVIPRSIRNKVDEGRD-IAIGEIT-AFIIKISKKIRQDTGGLRRVDELFMEEDPKL  386

Query  1239  RLKHLKRILPDIQVLGHPQANRAIIRTDD---TSSTNTLLVEGYGLKECMTTLG-VNGLR  1294
                 +  +L +I + G P   R ++  DD         L  EG  L   +   G V+  R
Sbjct  387   A-ILVASLLGNITLRGIPGIKRILVNEDDKGKVEPDWVLETEGVNLLRVLLVPGFVDAGR  445

Query  1295  TSTNNVMEMRDVLGIEAARVTIVQEISEVMKDMG--IDPRHMQLLADVMTYKGEVLGITR  1352
               +N++ E+ ++LGIEAAR  ++ EI  V +  G  I+ RH++L+AD MT KG ++ I R
Sbjct  446   ILSNDIHEILEILGIEAARNALLNEIRNVYRFQGIYINDRHLELIADQMTRKGYIMAIGR  505

Query  1353  FGLAKMRDSVL  1363
              G+ K   S L
Sbjct  506   HGINKAELSAL  516


>CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 2, contains the active 
site. The invariant motif -NADFDGD- binds the active site 
magnesium ion.
Length=166

 Score = 285 bits (731),  Expect = 2e-89, Method: Composition-based stats.
 Identities = 103/168 (61%), Positives = 129/168 (77%), Gaps = 2/168 (1%)

Query  372  GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG  431
            GKRVDFS RTVISPDPNL++DEV VP   AK +T+PE+VT YN ++L+Q V NG   +PG
Sbjct  1    GKRVDFSARTVISPDPNLKLDEVGVPISFAKTLTFPEIVTPYNIKRLRQLVENGPNVYPG  60

Query  432  ANYIIKKGSDFKLFLKYGNLNMIADQIQEGDVIERHIEDGDIVLFNRQPSLHKLSILSHF  491
            ANYII+  +  +  L+Y    +   +++ GD++ERH+ DGD+VLFNRQPSLH+LSI+ H 
Sbjct  61   ANYIIRI-NGARRDLRYQKRRL-DKELEIGDIVERHVIDGDVVLFNRQPSLHRLSIMGHR  118

Query  492  AKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGV  539
             +V P +TFRLN  V  PYNADFDGDEMNLHVPQ+EEARAEA ELM V
Sbjct  119  VRVLPGKTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAEAEELMLV  166


>CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 3, represents the pore 
domain. The 3' end of RNA is positioned close to this domain. 
The pore delimited by this domain is thought to act as 
a channel through which nucleotides enter the active site and/or 
where the 3' end of the RNA may be extruded during back-tracking.
Length=158

 Score = 145 bits (367),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 65/178 (37%), Positives = 101/178 (57%), Gaps = 21/178 (12%)

Query  542  NLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPETRFDLPPPAVLK  601
            N+ +P+NG+PII   QD +  AY+L+ +D FFDR    Q+ +Y         LP PA+LK
Sbjct  1    NILSPQNGKPIIGPSQDMVLGAYLLTREDTFFDREEVMQLLMYG------IVLPHPAILK  54

Query  602  P-QMLWTGKQVFNILMRPNKDDPVLVNLDAACREFKPPKDGRPKDLDPNDGWLVIRNSEV  660
            P + LWTGKQ F+ L+         +N     +          +DL  ND +++I N E+
Sbjct  55   PIKPLWTGKQTFSRLLPNE------INPKGKPKT-------NEEDLCENDSYVLINNGEL  101

Query  661  MCGVMDKATIGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFTNMGFSIGITDV  718
            + GV+DK T+G     ++ +I+ +++GP   A+ ++RL KL  R+ T  GFSIGI D+
Sbjct  102  ISGVIDKKTVG-KSLGSLIHIIYKEYGPEETAKFLDRLQKLGFRYLTKSGFSIGIDDI  158


>CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 4, represents the funnel 
domain. The funnel contain the binding site for some elongation 
factors.
Length=108

 Score = 112 bits (282),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 44/103 (43%), Positives = 60/103 (58%), Gaps = 0/103 (0%)

Query  747  KAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECIAQLSKYNSPLIMATSGSKGSSIN  806
            + G LE   G    ++ E  ++ IL+K R  AG+     L   NS  +MA SG+KGS IN
Sbjct  6    RYGKLEDIWGMTLEESFEALINNILNKARDPAGNIASKSLDPNNSIYMMADSGAKGSIIN  65

Query  807  VSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFV  849
            +SQ+    GQQ + G+R+  GF  RTLPHF K+   P S+GFV
Sbjct  66   ISQIAGCRGQQNVEGKRIPFGFSGRTLPHFKKDDEGPESRGFV  108



Lambda      K        H        a         alpha
   0.319    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1837326548


Query= TCONS_00023122

Length=1453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain...  324     3e-101
CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain...  310     1e-93 
CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain...  285     2e-89 
CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain...  145     2e-40 
CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain...  112     1e-29 


>CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 1, represents the clamp 
domain, which a mobile domain involved in positioning the 
DNA, maintenance of the transcription bubble and positioning 
of the nascent RNA strand.
Length=320

 Score = 324 bits (833),  Expect = 3e-101, Method: Composition-based stats.
 Identities = 131/353 (37%), Positives = 186/353 (53%), Gaps = 36/353 (10%)

Query  21   PKIIKELKFGVLSNDDIVSQAVVEVSDRKFFDLEHDRAVVPHGPLDGRMGISSKTATCQT  80
             K IKE++FG+ S ++I   +V EV+  + ++          G LD RMG   K   C+T
Sbjct  1    LKKIKEIQFGIASPEEIRKWSVGEVTKPETYN-YGSLKPEEGGLLDERMGTIDKDYECET  59

Query  81   CGGSLQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSRILLPEAERRAFLREMRR  140
            CG   + C GHFGH+ L  P FH+G+FK+ + IL+ +CK CS++LL   + + F ++ +R
Sbjct  60   CGKKKKDCPGHFGHIELAKPVFHIGFFKKTLKILECVCKYCSKLLLDPGKPKLFNKDKKR  119

Query  141  PGLDNLRRLQIAKRVNERCRKTRTCEACGAINGVVKKAGNSALKITHDKFRAFNVSTSVK  200
             GL+NL+    AK + E C+K   CE CG  NGV                          
Sbjct  120  LGLENLK--MGAKAILELCKKKDLCEHCGGKNGVCGSQ----------------------  155

Query  201  KVPPPSKIVFDRSFDEARTSNPEVEKHYKKAQDDMNALRVLNLFKKVSDTDCELLGLNPK  260
               P S+         A   + E E+      + +N  +VL +FK++SD D E+LG NP 
Sbjct  156  --QPVSRKEG-LKLKAAIKKSKEEEEK-----EILNPEKVLKIFKRISDEDVEILGFNPS  207

Query  261  EARPEMFLWQFIPAPPVCIRPSVGQDAAST-EDDLTAKLGDIVQSNINLKNALMKGAPVQ  319
             +RPE  +   +P PP CIRPSV  D     EDDLT KL DI++ N  LK  L  GAP  
Sbjct  208  GSRPEWMILTVLPVPPPCIRPSVQLDGGRRAEDDLTHKLRDIIKRNNRLKKLLELGAPSH  267

Query  320  TIVECWDYMQLQIAVYINSDVPGLNKADL--GKPIRGFVQRLKGKQGRFRGNL  370
             I E W  +Q  +A   ++++PGL  A     +P++   QRLKGK+GRFRGNL
Sbjct  268  IIREEWRLLQEHVATLFDNEIPGLPPALQKSKRPLKSISQRLKGKEGRFRGNL  320


>CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 5, represents the discontinuous 
cleft domain that is required to from the central 
cleft or channel where the DNA is bound.
Length=516

 Score = 310 bits (797),  Expect = 1e-93, Method: Composition-based stats.
 Identities = 167/551 (30%), Positives = 235/551 (43%), Gaps = 78/551 (14%)

Query  856   GLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSDAIVQF  915
             GL P EF FH M GREGL+DTAVKTAE+GY+ RRL+K+LEDL   YDDTVRNS   IVQF
Sbjct  1     GLTPQEFFFHTMGGREGLIDTAVKTAESGYLQRRLVKALEDLVVTYDDTVRNSGGEIVQF  60

Query  916   QYGDDKLDPVDMEGKAKPVHFDRTFIHAESITYDNDERSLLPHEIMEVCEEMLSKERAKL  975
              YG+D LDP+ +E + +               + ND        ++     +  K+   +
Sbjct  61    LYGEDGLDPLKIEKQGRFTIEFSD--LKLEDKFKNDLLD---DLLLLSEFSLSYKKEILV  115

Query  976   VREDLLGNKLAYMDRSDHGVDQFESARDFLESIQQYISSKADKLISRGGDIDPSDERSQK  1035
                 L  ++L           +    R  L       S    K +           RS+ 
Sbjct  116   RDSKLGRDRL----------SKEAQERATLLFELLLKSGLESKRV-----------RSEL  154

Query  1036  GLNHTGKLTEKTLRTFITSCLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGV  1095
                       K     +    + Y+++ + PG AVG + AQSIGEPGTQMTL TFHFAGV
Sbjct  155   ------TCNSKAFVCLLCYGRLLYQQSLINPGEAVGIIAAQSIGEPGTQMTLNTFHFAGV  208

Query  1096  AGMSITQGVPRIKEIINASKEISTPVISCDLV--TKDNVIAARIVKGRIEKTYLRDII--  1151
             A  ++T GVPR+KEIIN SK I +P ++  L       +  A+ V G IEK  L  ++  
Sbjct  209   ASKNVTLGVPRLKEIINVSKNIKSPSLTVYLFDEVGRELEKAKKVYGAIEKVTLGSVVES  268

Query  1152  -----------HYVREAWTGKEAYLTVKINWET---IQNLALELKIRNIVDAIKNHKRFK  1197
                          +     G   +  +         I      L +   +  I N    K
Sbjct  269   GEILYDPDPFNTPIISDVKGVVKFFDIIDEVTNEEEIDPETGLLILVIRLLKILNKSIKK  328

Query  1198  ---------ADDLKFRSTNSHIHIYMDIDPASKASLSKTEI----------AATSADPFL  1238
                      +   K       I I             K                  DP L
Sbjct  329   VVKSEVIPRSIRNKVDEGRD-IAIGEIT-AFIIKISKKIRQDTGGLRRVDELFMEEDPKL  386

Query  1239  RLKHLKRILPDIQVLGHPQANRAIIRTDD---TSSTNTLLVEGYGLKECMTTLG-VNGLR  1294
                 +  +L +I + G P   R ++  DD         L  EG  L   +   G V+  R
Sbjct  387   A-ILVASLLGNITLRGIPGIKRILVNEDDKGKVEPDWVLETEGVNLLRVLLVPGFVDAGR  445

Query  1295  TSTNNVMEMRDVLGIEAARVTIVQEISEVMKDMG--IDPRHMQLLADVMTYKGEVLGITR  1352
               +N++ E+ ++LGIEAAR  ++ EI  V +  G  I+ RH++L+AD MT KG ++ I R
Sbjct  446   ILSNDIHEILEILGIEAARNALLNEIRNVYRFQGIYINDRHLELIADQMTRKGYIMAIGR  505

Query  1353  FGLAKMRDSVL  1363
              G+ K   S L
Sbjct  506   HGINKAELSAL  516


>CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 2, contains the active 
site. The invariant motif -NADFDGD- binds the active site 
magnesium ion.
Length=166

 Score = 285 bits (731),  Expect = 2e-89, Method: Composition-based stats.
 Identities = 103/168 (61%), Positives = 129/168 (77%), Gaps = 2/168 (1%)

Query  372  GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG  431
            GKRVDFS RTVISPDPNL++DEV VP   AK +T+PE+VT YN ++L+Q V NG   +PG
Sbjct  1    GKRVDFSARTVISPDPNLKLDEVGVPISFAKTLTFPEIVTPYNIKRLRQLVENGPNVYPG  60

Query  432  ANYIIKKGSDFKLFLKYGNLNMIADQIQEGDVIERHIEDGDIVLFNRQPSLHKLSILSHF  491
            ANYII+  +  +  L+Y    +   +++ GD++ERH+ DGD+VLFNRQPSLH+LSI+ H 
Sbjct  61   ANYIIRI-NGARRDLRYQKRRL-DKELEIGDIVERHVIDGDVVLFNRQPSLHRLSIMGHR  118

Query  492  AKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGV  539
             +V P +TFRLN  V  PYNADFDGDEMNLHVPQ+EEARAEA ELM V
Sbjct  119  VRVLPGKTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAEAEELMLV  166


>CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 3, represents the pore 
domain. The 3' end of RNA is positioned close to this domain. 
The pore delimited by this domain is thought to act as 
a channel through which nucleotides enter the active site and/or 
where the 3' end of the RNA may be extruded during back-tracking.
Length=158

 Score = 145 bits (367),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 65/178 (37%), Positives = 101/178 (57%), Gaps = 21/178 (12%)

Query  542  NLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPETRFDLPPPAVLK  601
            N+ +P+NG+PII   QD +  AY+L+ +D FFDR    Q+ +Y         LP PA+LK
Sbjct  1    NILSPQNGKPIIGPSQDMVLGAYLLTREDTFFDREEVMQLLMYG------IVLPHPAILK  54

Query  602  P-QMLWTGKQVFNILMRPNKDDPVLVNLDAACREFKPPKDGRPKDLDPNDGWLVIRNSEV  660
            P + LWTGKQ F+ L+         +N     +          +DL  ND +++I N E+
Sbjct  55   PIKPLWTGKQTFSRLLPNE------INPKGKPKT-------NEEDLCENDSYVLINNGEL  101

Query  661  MCGVMDKATIGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFTNMGFSIGITDV  718
            + GV+DK T+G     ++ +I+ +++GP   A+ ++RL KL  R+ T  GFSIGI D+
Sbjct  102  ISGVIDKKTVG-KSLGSLIHIIYKEYGPEETAKFLDRLQKLGFRYLTKSGFSIGIDDI  158


>CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 4, represents the funnel 
domain. The funnel contain the binding site for some elongation 
factors.
Length=108

 Score = 112 bits (282),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 44/103 (43%), Positives = 60/103 (58%), Gaps = 0/103 (0%)

Query  747  KAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECIAQLSKYNSPLIMATSGSKGSSIN  806
            + G LE   G    ++ E  ++ IL+K R  AG+     L   NS  +MA SG+KGS IN
Sbjct  6    RYGKLEDIWGMTLEESFEALINNILNKARDPAGNIASKSLDPNNSIYMMADSGAKGSIIN  65

Query  807  VSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFV  849
            +SQ+    GQQ + G+R+  GF  RTLPHF K+   P S+GFV
Sbjct  66   ISQIAGCRGQQNVEGKRIPFGFSGRTLPHFKKDDEGPESRGFV  108



Lambda      K        H        a         alpha
   0.319    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1837326548


Query= TCONS_00023124

Length=1446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain...  324     4e-101
CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain...  310     1e-93 
CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain...  285     2e-89 
CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain...  145     2e-40 
CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain...  112     1e-29 


>CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 1, represents the clamp 
domain, which a mobile domain involved in positioning the 
DNA, maintenance of the transcription bubble and positioning 
of the nascent RNA strand.
Length=320

 Score = 324 bits (832),  Expect = 4e-101, Method: Composition-based stats.
 Identities = 131/353 (37%), Positives = 186/353 (53%), Gaps = 36/353 (10%)

Query  14   PKIIKELKFGVLSNDDIVSQAVVEVSDRKFFDLEHDRAVVPHGPLDGRMGISSKTATCQT  73
             K IKE++FG+ S ++I   +V EV+  + ++          G LD RMG   K   C+T
Sbjct  1    LKKIKEIQFGIASPEEIRKWSVGEVTKPETYN-YGSLKPEEGGLLDERMGTIDKDYECET  59

Query  74   CGGSLQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSRILLPEAERRAFLREMRR  133
            CG   + C GHFGH+ L  P FH+G+FK+ + IL+ +CK CS++LL   + + F ++ +R
Sbjct  60   CGKKKKDCPGHFGHIELAKPVFHIGFFKKTLKILECVCKYCSKLLLDPGKPKLFNKDKKR  119

Query  134  PGLDNLRRLQIAKRVNERCRKTRTCEACGAINGVVKKAGNSALKITHDKFRAFNVSTSVK  193
             GL+NL+    AK + E C+K   CE CG  NGV                          
Sbjct  120  LGLENLK--MGAKAILELCKKKDLCEHCGGKNGVCGSQ----------------------  155

Query  194  KVPPPSKIVFDRSFDEARTSNPEVEKHYKKAQDDMNALRVLNLFKKVSDTDCELLGLNPK  253
               P S+         A   + E E+      + +N  +VL +FK++SD D E+LG NP 
Sbjct  156  --QPVSRKEG-LKLKAAIKKSKEEEEK-----EILNPEKVLKIFKRISDEDVEILGFNPS  207

Query  254  EARPEMFLWQFIPAPPVCIRPSVGQDAAST-EDDLTAKLGDIVQSNINLKNALMKGAPVQ  312
             +RPE  +   +P PP CIRPSV  D     EDDLT KL DI++ N  LK  L  GAP  
Sbjct  208  GSRPEWMILTVLPVPPPCIRPSVQLDGGRRAEDDLTHKLRDIIKRNNRLKKLLELGAPSH  267

Query  313  TIVECWDYMQLQIAVYINSDVPGLNKADL--GKPIRGFVQRLKGKQGRFRGNL  363
             I E W  +Q  +A   ++++PGL  A     +P++   QRLKGK+GRFRGNL
Sbjct  268  IIREEWRLLQEHVATLFDNEIPGLPPALQKSKRPLKSISQRLKGKEGRFRGNL  320


>CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 5, represents the discontinuous 
cleft domain that is required to from the central 
cleft or channel where the DNA is bound.
Length=516

 Score = 310 bits (796),  Expect = 1e-93, Method: Composition-based stats.
 Identities = 167/551 (30%), Positives = 235/551 (43%), Gaps = 78/551 (14%)

Query  849   GLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSDAIVQF  908
             GL P EF FH M GREGL+DTAVKTAE+GY+ RRL+K+LEDL   YDDTVRNS   IVQF
Sbjct  1     GLTPQEFFFHTMGGREGLIDTAVKTAESGYLQRRLVKALEDLVVTYDDTVRNSGGEIVQF  60

Query  909   QYGDDKLDPVDMEGKAKPVHFDRTFIHAESITYDNDERSLLPHEIMEVCEEMLSKERAKL  968
              YG+D LDP+ +E + +               + ND        ++     +  K+   +
Sbjct  61    LYGEDGLDPLKIEKQGRFTIEFSD--LKLEDKFKNDLLD---DLLLLSEFSLSYKKEILV  115

Query  969   VREDLLGNKLAYMDRSDHGVDQFESARDFLESIQQYISSKADKLISRGGDIDPSDERSQK  1028
                 L  ++L           +    R  L       S    K +           RS+ 
Sbjct  116   RDSKLGRDRL----------SKEAQERATLLFELLLKSGLESKRV-----------RSEL  154

Query  1029  GLNHTGKLTEKTLRTFITSCLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGV  1088
                       K     +    + Y+++ + PG AVG + AQSIGEPGTQMTL TFHFAGV
Sbjct  155   ------TCNSKAFVCLLCYGRLLYQQSLINPGEAVGIIAAQSIGEPGTQMTLNTFHFAGV  208

Query  1089  AGMSITQGVPRIKEIINASKEISTPVISCDLV--TKDNVIAARIVKGRIEKTYLRDII--  1144
             A  ++T GVPR+KEIIN SK I +P ++  L       +  A+ V G IEK  L  ++  
Sbjct  209   ASKNVTLGVPRLKEIINVSKNIKSPSLTVYLFDEVGRELEKAKKVYGAIEKVTLGSVVES  268

Query  1145  -----------HYVREAWTGKEAYLTVKINWET---IQNLALELKIRNIVDAIKNHKRFK  1190
                          +     G   +  +         I      L +   +  I N    K
Sbjct  269   GEILYDPDPFNTPIISDVKGVVKFFDIIDEVTNEEEIDPETGLLILVIRLLKILNKSIKK  328

Query  1191  ---------ADDLKFRSTNSHIHIYMDIDPASKASLSKTEI----------AATSADPFL  1231
                      +   K       I I             K                  DP L
Sbjct  329   VVKSEVIPRSIRNKVDEGRD-IAIGEIT-AFIIKISKKIRQDTGGLRRVDELFMEEDPKL  386

Query  1232  RLKHLKRILPDIQVLGHPQANRAIIRTDD---TSSTNTLLVEGYGLKECMTTLG-VNGLR  1287
                 +  +L +I + G P   R ++  DD         L  EG  L   +   G V+  R
Sbjct  387   A-ILVASLLGNITLRGIPGIKRILVNEDDKGKVEPDWVLETEGVNLLRVLLVPGFVDAGR  445

Query  1288  TSTNNVMEMRDVLGIEAARVTIVQEISEVMKDMG--IDPRHMQLLADVMTYKGEVLGITR  1345
               +N++ E+ ++LGIEAAR  ++ EI  V +  G  I+ RH++L+AD MT KG ++ I R
Sbjct  446   ILSNDIHEILEILGIEAARNALLNEIRNVYRFQGIYINDRHLELIADQMTRKGYIMAIGR  505

Query  1346  FGLAKMRDSVL  1356
              G+ K   S L
Sbjct  506   HGINKAELSAL  516


>CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 2, contains the active 
site. The invariant motif -NADFDGD- binds the active site 
magnesium ion.
Length=166

 Score = 285 bits (731),  Expect = 2e-89, Method: Composition-based stats.
 Identities = 103/168 (61%), Positives = 129/168 (77%), Gaps = 2/168 (1%)

Query  365  GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG  424
            GKRVDFS RTVISPDPNL++DEV VP   AK +T+PE+VT YN ++L+Q V NG   +PG
Sbjct  1    GKRVDFSARTVISPDPNLKLDEVGVPISFAKTLTFPEIVTPYNIKRLRQLVENGPNVYPG  60

Query  425  ANYIIKKGSDFKLFLKYGNLNMIADQIQEGDVIERHIEDGDIVLFNRQPSLHKLSILSHF  484
            ANYII+  +  +  L+Y    +   +++ GD++ERH+ DGD+VLFNRQPSLH+LSI+ H 
Sbjct  61   ANYIIRI-NGARRDLRYQKRRL-DKELEIGDIVERHVIDGDVVLFNRQPSLHRLSIMGHR  118

Query  485  AKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGV  532
             +V P +TFRLN  V  PYNADFDGDEMNLHVPQ+EEARAEA ELM V
Sbjct  119  VRVLPGKTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAEAEELMLV  166


>CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 3, represents the pore 
domain. The 3' end of RNA is positioned close to this domain. 
The pore delimited by this domain is thought to act as 
a channel through which nucleotides enter the active site and/or 
where the 3' end of the RNA may be extruded during back-tracking.
Length=158

 Score = 145 bits (367),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 65/178 (37%), Positives = 101/178 (57%), Gaps = 21/178 (12%)

Query  535  NLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPETRFDLPPPAVLK  594
            N+ +P+NG+PII   QD +  AY+L+ +D FFDR    Q+ +Y         LP PA+LK
Sbjct  1    NILSPQNGKPIIGPSQDMVLGAYLLTREDTFFDREEVMQLLMYG------IVLPHPAILK  54

Query  595  P-QMLWTGKQVFNILMRPNKDDPVLVNLDAACREFKPPKDGRPKDLDPNDGWLVIRNSEV  653
            P + LWTGKQ F+ L+         +N     +          +DL  ND +++I N E+
Sbjct  55   PIKPLWTGKQTFSRLLPNE------INPKGKPKT-------NEEDLCENDSYVLINNGEL  101

Query  654  MCGVMDKATIGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFTNMGFSIGITDV  711
            + GV+DK T+G     ++ +I+ +++GP   A+ ++RL KL  R+ T  GFSIGI D+
Sbjct  102  ISGVIDKKTVG-KSLGSLIHIIYKEYGPEETAKFLDRLQKLGFRYLTKSGFSIGIDDI  158


>CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 4, represents the funnel 
domain. The funnel contain the binding site for some elongation 
factors.
Length=108

 Score = 112 bits (282),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 44/103 (43%), Positives = 60/103 (58%), Gaps = 0/103 (0%)

Query  740  KAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECIAQLSKYNSPLIMATSGSKGSSIN  799
            + G LE   G    ++ E  ++ IL+K R  AG+     L   NS  +MA SG+KGS IN
Sbjct  6    RYGKLEDIWGMTLEESFEALINNILNKARDPAGNIASKSLDPNNSIYMMADSGAKGSIIN  65

Query  800  VSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFV  842
            +SQ+    GQQ + G+R+  GF  RTLPHF K+   P S+GFV
Sbjct  66   ISQIAGCRGQQNVEGKRIPFGFSGRTLPHFKKDDEGPESRGFV  108



Lambda      K        H        a         alpha
   0.319    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0802    0.140     1.90     42.6     43.6 

Effective search space used: 1827827814


Query= TCONS_00023123

Length=1446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain...  317     1e-98
CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain...  310     1e-93
CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain...  285     2e-89
CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain...  145     2e-40
CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain...  112     1e-29


>CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 1, represents the clamp 
domain, which a mobile domain involved in positioning the 
DNA, maintenance of the transcription bubble and positioning 
of the nascent RNA strand.
Length=320

 Score = 317 bits (814),  Expect = 1e-98, Method: Composition-based stats.
 Identities = 130/353 (37%), Positives = 184/353 (52%), Gaps = 36/353 (10%)

Query  14   PKIIKELKFGVLYECDIVSQAVVEVSDRKFFDLEHDRAVVPHGPLDGRMGISSKTATCQT  73
             K IKE++FG+    +I   +V EV+  + ++          G LD RMG   K   C+T
Sbjct  1    LKKIKEIQFGIASPEEIRKWSVGEVTKPETYN-YGSLKPEEGGLLDERMGTIDKDYECET  59

Query  74   CGGSLQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSRILLPEAERRAFLREMRR  133
            CG   + C GHFGH+ L  P FH+G+FK+ + IL+ +CK CS++LL   + + F ++ +R
Sbjct  60   CGKKKKDCPGHFGHIELAKPVFHIGFFKKTLKILECVCKYCSKLLLDPGKPKLFNKDKKR  119

Query  134  PGLDNLRRLQIAKRVNERCRKTRTCEACGAINGVVKKAGNSALKITHDKFRAFNVSTSVK  193
             GL+NL+    AK + E C+K   CE CG  NGV                          
Sbjct  120  LGLENLK--MGAKAILELCKKKDLCEHCGGKNGVCGSQ----------------------  155

Query  194  KVPPPSKIVFDRSFDEARTSNPEVEKHYKKAQDDMNALRVLNLFKKVSDTDCELLGLNPK  253
               P S+         A   + E E+      + +N  +VL +FK++SD D E+LG NP 
Sbjct  156  --QPVSRKEG-LKLKAAIKKSKEEEEK-----EILNPEKVLKIFKRISDEDVEILGFNPS  207

Query  254  EARPEMFLWQFIPAPPVCIRPSVGQDAAST-EDDLTAKLGDIVQSNINLKNALMKGAPVQ  312
             +RPE  +   +P PP CIRPSV  D     EDDLT KL DI++ N  LK  L  GAP  
Sbjct  208  GSRPEWMILTVLPVPPPCIRPSVQLDGGRRAEDDLTHKLRDIIKRNNRLKKLLELGAPSH  267

Query  313  TIVECWDYMQLQIAVYINSDVPGLNKADL--GKPIRGFVQRLKGKQGRFRGNL  363
             I E W  +Q  +A   ++++PGL  A     +P++   QRLKGK+GRFRGNL
Sbjct  268  IIREEWRLLQEHVATLFDNEIPGLPPALQKSKRPLKSISQRLKGKEGRFRGNL  320


>CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 5, represents the discontinuous 
cleft domain that is required to from the central 
cleft or channel where the DNA is bound.
Length=516

 Score = 310 bits (797),  Expect = 1e-93, Method: Composition-based stats.
 Identities = 167/551 (30%), Positives = 235/551 (43%), Gaps = 78/551 (14%)

Query  849   GLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSDAIVQF  908
             GL P EF FH M GREGL+DTAVKTAE+GY+ RRL+K+LEDL   YDDTVRNS   IVQF
Sbjct  1     GLTPQEFFFHTMGGREGLIDTAVKTAESGYLQRRLVKALEDLVVTYDDTVRNSGGEIVQF  60

Query  909   QYGDDKLDPVDMEGKAKPVHFDRTFIHAESITYDNDERSLLPHEIMEVCEEMLSKERAKL  968
              YG+D LDP+ +E + +               + ND        ++     +  K+   +
Sbjct  61    LYGEDGLDPLKIEKQGRFTIEFSD--LKLEDKFKNDLLD---DLLLLSEFSLSYKKEILV  115

Query  969   VREDLLGNKLAYMDRSDHGVDQFESARDFLESIQQYISSKADKLISRGGDIDPSDERSQK  1028
                 L  ++L           +    R  L       S    K +           RS+ 
Sbjct  116   RDSKLGRDRL----------SKEAQERATLLFELLLKSGLESKRV-----------RSEL  154

Query  1029  GLNHTGKLTEKTLRTFITSCLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGV  1088
                       K     +    + Y+++ + PG AVG + AQSIGEPGTQMTL TFHFAGV
Sbjct  155   ------TCNSKAFVCLLCYGRLLYQQSLINPGEAVGIIAAQSIGEPGTQMTLNTFHFAGV  208

Query  1089  AGMSITQGVPRIKEIINASKEISTPVISCDLV--TKDNVIAARIVKGRIEKTYLRDII--  1144
             A  ++T GVPR+KEIIN SK I +P ++  L       +  A+ V G IEK  L  ++  
Sbjct  209   ASKNVTLGVPRLKEIINVSKNIKSPSLTVYLFDEVGRELEKAKKVYGAIEKVTLGSVVES  268

Query  1145  -----------HYVREAWTGKEAYLTVKINWET---IQNLALELKIRNIVDAIKNHKRFK  1190
                          +     G   +  +         I      L +   +  I N    K
Sbjct  269   GEILYDPDPFNTPIISDVKGVVKFFDIIDEVTNEEEIDPETGLLILVIRLLKILNKSIKK  328

Query  1191  ---------ADDLKFRSTNSHIHIYMDIDPASKASLSKTEI----------AATSADPFL  1231
                      +   K       I I             K                  DP L
Sbjct  329   VVKSEVIPRSIRNKVDEGRD-IAIGEIT-AFIIKISKKIRQDTGGLRRVDELFMEEDPKL  386

Query  1232  RLKHLKRILPDIQVLGHPQANRAIIRTDD---TSSTNTLLVEGYGLKECMTTLG-VNGLR  1287
                 +  +L +I + G P   R ++  DD         L  EG  L   +   G V+  R
Sbjct  387   A-ILVASLLGNITLRGIPGIKRILVNEDDKGKVEPDWVLETEGVNLLRVLLVPGFVDAGR  445

Query  1288  TSTNNVMEMRDVLGIEAARVTIVQEISEVMKDMG--IDPRHMQLLADVMTYKGEVLGITR  1345
               +N++ E+ ++LGIEAAR  ++ EI  V +  G  I+ RH++L+AD MT KG ++ I R
Sbjct  446   ILSNDIHEILEILGIEAARNALLNEIRNVYRFQGIYINDRHLELIADQMTRKGYIMAIGR  505

Query  1346  FGLAKMRDSVL  1356
              G+ K   S L
Sbjct  506   HGINKAELSAL  516


>CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 2, contains the active 
site. The invariant motif -NADFDGD- binds the active site 
magnesium ion.
Length=166

 Score = 285 bits (731),  Expect = 2e-89, Method: Composition-based stats.
 Identities = 103/168 (61%), Positives = 129/168 (77%), Gaps = 2/168 (1%)

Query  365  GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG  424
            GKRVDFS RTVISPDPNL++DEV VP   AK +T+PE+VT YN ++L+Q V NG   +PG
Sbjct  1    GKRVDFSARTVISPDPNLKLDEVGVPISFAKTLTFPEIVTPYNIKRLRQLVENGPNVYPG  60

Query  425  ANYIIKKGSDFKLFLKYGNLNMIADQIQEGDVIERHIEDGDIVLFNRQPSLHKLSILSHF  484
            ANYII+  +  +  L+Y    +   +++ GD++ERH+ DGD+VLFNRQPSLH+LSI+ H 
Sbjct  61   ANYIIRI-NGARRDLRYQKRRL-DKELEIGDIVERHVIDGDVVLFNRQPSLHRLSIMGHR  118

Query  485  AKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGV  532
             +V P +TFRLN  V  PYNADFDGDEMNLHVPQ+EEARAEA ELM V
Sbjct  119  VRVLPGKTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAEAEELMLV  166


>CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 3, represents the pore 
domain. The 3' end of RNA is positioned close to this domain. 
The pore delimited by this domain is thought to act as 
a channel through which nucleotides enter the active site and/or 
where the 3' end of the RNA may be extruded during back-tracking.
Length=158

 Score = 145 bits (367),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 65/178 (37%), Positives = 101/178 (57%), Gaps = 21/178 (12%)

Query  535  NLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPETRFDLPPPAVLK  594
            N+ +P+NG+PII   QD +  AY+L+ +D FFDR    Q+ +Y         LP PA+LK
Sbjct  1    NILSPQNGKPIIGPSQDMVLGAYLLTREDTFFDREEVMQLLMYG------IVLPHPAILK  54

Query  595  P-QMLWTGKQVFNILMRPNKDDPVLVNLDAACREFKPPKDGRPKDLDPNDGWLVIRNSEV  653
            P + LWTGKQ F+ L+         +N     +          +DL  ND +++I N E+
Sbjct  55   PIKPLWTGKQTFSRLLPNE------INPKGKPKT-------NEEDLCENDSYVLINNGEL  101

Query  654  MCGVMDKATIGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFTNMGFSIGITDV  711
            + GV+DK T+G     ++ +I+ +++GP   A+ ++RL KL  R+ T  GFSIGI D+
Sbjct  102  ISGVIDKKTVG-KSLGSLIHIIYKEYGPEETAKFLDRLQKLGFRYLTKSGFSIGIDDI  158


>CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 4, represents the funnel 
domain. The funnel contain the binding site for some elongation 
factors.
Length=108

 Score = 112 bits (282),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 44/103 (43%), Positives = 60/103 (58%), Gaps = 0/103 (0%)

Query  740  KAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECIAQLSKYNSPLIMATSGSKGSSIN  799
            + G LE   G    ++ E  ++ IL+K R  AG+     L   NS  +MA SG+KGS IN
Sbjct  6    RYGKLEDIWGMTLEESFEALINNILNKARDPAGNIASKSLDPNNSIYMMADSGAKGSIIN  65

Query  800  VSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFV  842
            +SQ+    GQQ + G+R+  GF  RTLPHF K+   P S+GFV
Sbjct  66   ISQIAGCRGQQNVEGKRIPFGFSGRTLPHFKKDDEGPESRGFV  108



Lambda      K        H        a         alpha
   0.319    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1827827814


Query= TCONS_00027489

Length=1385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain...  310     1e-93
CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain...  285     9e-90
CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain...  287     6e-88
CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain...  145     2e-40
CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain...  112     1e-29


>CDD:398596 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 5, represents the discontinuous 
cleft domain that is required to from the central 
cleft or channel where the DNA is bound.
Length=516

 Score = 310 bits (796),  Expect = 1e-93, Method: Composition-based stats.
 Identities = 167/551 (30%), Positives = 235/551 (43%), Gaps = 78/551 (14%)

Query  788   GLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSDAIVQF  847
             GL P EF FH M GREGL+DTAVKTAE+GY+ RRL+K+LEDL   YDDTVRNS   IVQF
Sbjct  1     GLTPQEFFFHTMGGREGLIDTAVKTAESGYLQRRLVKALEDLVVTYDDTVRNSGGEIVQF  60

Query  848   QYGDDKLDPVDMEGKAKPVHFDRTFIHAESITYDNDERSLLPHEIMEVCEEMLSKERAKL  907
              YG+D LDP+ +E + +               + ND        ++     +  K+   +
Sbjct  61    LYGEDGLDPLKIEKQGRFTIEFSD--LKLEDKFKNDLLD---DLLLLSEFSLSYKKEILV  115

Query  908   VREDLLGNKLAYMDRSDHGVDQFESARDFLESIQQYISSKADKLISRGGDIDPSDERSQK  967
                 L  ++L           +    R  L       S    K +           RS+ 
Sbjct  116   RDSKLGRDRL----------SKEAQERATLLFELLLKSGLESKRV-----------RSEL  154

Query  968   GLNHTGKLTEKTLRTFITSCLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGV  1027
                       K     +    + Y+++ + PG AVG + AQSIGEPGTQMTL TFHFAGV
Sbjct  155   ------TCNSKAFVCLLCYGRLLYQQSLINPGEAVGIIAAQSIGEPGTQMTLNTFHFAGV  208

Query  1028  AGMSITQGVPRIKEIINASKEISTPVISCDLV--TKDNVIAARIVKGRIEKTYLRDII--  1083
             A  ++T GVPR+KEIIN SK I +P ++  L       +  A+ V G IEK  L  ++  
Sbjct  209   ASKNVTLGVPRLKEIINVSKNIKSPSLTVYLFDEVGRELEKAKKVYGAIEKVTLGSVVES  268

Query  1084  -----------HYVREAWTGKEAYLTVKINWET---IQNLALELKIRNIVDAIKNHKRFK  1129
                          +     G   +  +         I      L +   +  I N    K
Sbjct  269   GEILYDPDPFNTPIISDVKGVVKFFDIIDEVTNEEEIDPETGLLILVIRLLKILNKSIKK  328

Query  1130  ---------ADDLKFRSTNSHIHIYMDIDPASKASLSKTEI----------AATSADPFL  1170
                      +   K       I I             K                  DP L
Sbjct  329   VVKSEVIPRSIRNKVDEGRD-IAIGEIT-AFIIKISKKIRQDTGGLRRVDELFMEEDPKL  386

Query  1171  RLKHLKRILPDIQVLGHPQANRAIIRTDD---TSSTNTLLVEGYGLKECMTTLG-VNGLR  1226
                 +  +L +I + G P   R ++  DD         L  EG  L   +   G V+  R
Sbjct  387   A-ILVASLLGNITLRGIPGIKRILVNEDDKGKVEPDWVLETEGVNLLRVLLVPGFVDAGR  445

Query  1227  TSTNNVMEMRDVLGIEAARVTIVQEISEVMKDMG--IDPRHMQLLADVMTYKGEVLGITR  1284
               +N++ E+ ++LGIEAAR  ++ EI  V +  G  I+ RH++L+AD MT KG ++ I R
Sbjct  446   ILSNDIHEILEILGIEAARNALLNEIRNVYRFQGIYINDRHLELIADQMTRKGYIMAIGR  505

Query  1285  FGLAKMRDSVL  1295
              G+ K   S L
Sbjct  506   HGINKAELSAL  516


>CDD:395498 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 2, contains the active 
site. The invariant motif -NADFDGD- binds the active site 
magnesium ion.
Length=166

 Score = 285 bits (732),  Expect = 9e-90, Method: Composition-based stats.
 Identities = 103/168 (61%), Positives = 129/168 (77%), Gaps = 2/168 (1%)

Query  304  GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG  363
            GKRVDFS RTVISPDPNL++DEV VP   AK +T+PE+VT YN ++L+Q V NG   +PG
Sbjct  1    GKRVDFSARTVISPDPNLKLDEVGVPISFAKTLTFPEIVTPYNIKRLRQLVENGPNVYPG  60

Query  364  ANYIIKKGSDFKLFLKYGNLNMIADQIQEGDVIERHIEDGDIVLFNRQPSLHKLSILSHF  423
            ANYII+  +  +  L+Y    +   +++ GD++ERH+ DGD+VLFNRQPSLH+LSI+ H 
Sbjct  61   ANYIIRI-NGARRDLRYQKRRL-DKELEIGDIVERHVIDGDVVLFNRQPSLHRLSIMGHR  118

Query  424  AKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGV  471
             +V P +TFRLN  V  PYNADFDGDEMNLHVPQ+EEARAEA ELM V
Sbjct  119  VRVLPGKTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAEAEELMLV  166


>CDD:398595 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 1, represents the clamp 
domain, which a mobile domain involved in positioning the 
DNA, maintenance of the transcription bubble and positioning 
of the nascent RNA strand.
Length=320

 Score = 287 bits (736),  Expect = 6e-88, Method: Composition-based stats.
 Identities = 116/305 (38%), Positives = 161/305 (53%), Gaps = 35/305 (11%)

Query  1    MGISSKTATCQTCGGSLQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSRILLPE  60
            MG   K   C+TCG   + C GHFGH+ L  P FH+G+FK+ + IL+ +CK CS++LL  
Sbjct  48   MGTIDKDYECETCGKKKKDCPGHFGHIELAKPVFHIGFFKKTLKILECVCKYCSKLLLDP  107

Query  61   AERRAFLREMRRPGLDNLRRLQIAKRVNERCRKTRTCEACGAINGVVKKAGNSALKITHD  120
             + + F ++ +R GL+NL+    AK + E C+K   CE CG  NGV              
Sbjct  108  GKPKLFNKDKKRLGLENLK--MGAKAILELCKKKDLCEHCGGKNGVCGSQ----------  155

Query  121  KFRAFNVSTSVKKVPPPSKIVFDRSFDEARTSNPEVEKHYKKAQDDMNALRVLNLFKKVS  180
                           P S+         A   + E E+      + +N  +VL +FK++S
Sbjct  156  --------------QPVSRKEG-LKLKAAIKKSKEEEEK-----EILNPEKVLKIFKRIS  195

Query  181  DTDCELLGLNPKEARPEMFLWQFIPAPPVCIRPSVGQDAAST-EDDLTAKLGDIVQSNIN  239
            D D E+LG NP  +RPE  +   +P PP CIRPSV  D     EDDLT KL DI++ N  
Sbjct  196  DEDVEILGFNPSGSRPEWMILTVLPVPPPCIRPSVQLDGGRRAEDDLTHKLRDIIKRNNR  255

Query  240  LKNALMKGAPVQTIVECWDYMQLQIAVYINSDVPGLNKADL--GKPIRGFVQRLKGKQGR  297
            LK  L  GAP   I E W  +Q  +A   ++++PGL  A     +P++   QRLKGK+GR
Sbjct  256  LKKLLELGAPSHIIREEWRLLQEHVATLFDNEIPGLPPALQKSKRPLKSISQRLKGKEGR  315

Query  298  FRGNL  302
            FRGNL
Sbjct  316  FRGNL  320


>CDD:461507 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 3, represents the pore 
domain. The 3' end of RNA is positioned close to this domain. 
The pore delimited by this domain is thought to act as 
a channel through which nucleotides enter the active site and/or 
where the 3' end of the RNA may be extruded during back-tracking.
Length=158

 Score = 145 bits (367),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 65/178 (37%), Positives = 101/178 (57%), Gaps = 21/178 (12%)

Query  474  NLATPKNGEPIISAIQDFISAAYILSSKDNFFDRRSFTQICLYMLGPETRFDLPPPAVLK  533
            N+ +P+NG+PII   QD +  AY+L+ +D FFDR    Q+ +Y         LP PA+LK
Sbjct  1    NILSPQNGKPIIGPSQDMVLGAYLLTREDTFFDREEVMQLLMYG------IVLPHPAILK  54

Query  534  P-QMLWTGKQVFNILMRPNKDDPVLVNLDAACREFKPPKDGRPKDLDPNDGWLVIRNSEV  592
            P + LWTGKQ F+ L+         +N     +          +DL  ND +++I N E+
Sbjct  55   PIKPLWTGKQTFSRLLPNE------INPKGKPKT-------NEEDLCENDSYVLINNGEL  101

Query  593  MCGVMDKATIGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSARWFTNMGFSIGITDV  650
            + GV+DK T+G     ++ +I+ +++GP   A+ ++RL KL  R+ T  GFSIGI D+
Sbjct  102  ISGVIDKKTVG-KSLGSLIHIIYKEYGPEETAKFLDRLQKLGFRYLTKSGFSIGIDDI  158


>CDD:398598 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4.  RNA 
polymerases catalyze the DNA dependent polymerization of RNA. 
Prokaryotes contain a single RNA polymerase compared to 
three in eukaryotes (not including mitochondrial. and chloroplast 
polymerases). This domain, domain 4, represents the funnel 
domain. The funnel contain the binding site for some elongation 
factors.
Length=108

 Score = 112 bits (281),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 44/103 (43%), Positives = 60/103 (58%), Gaps = 0/103 (0%)

Query  679  KAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECIAQLSKYNSPLIMATSGSKGSSIN  738
            + G LE   G    ++ E  ++ IL+K R  AG+     L   NS  +MA SG+KGS IN
Sbjct  6    RYGKLEDIWGMTLEESFEALINNILNKARDPAGNIASKSLDPNNSIYMMADSGAKGSIIN  65

Query  739  VSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFV  781
            +SQ+    GQQ + G+R+  GF  RTLPHF K+   P S+GFV
Sbjct  66   ISQIAGCRGQQNVEGKRIPFGFSGRTLPHFKKDDEGPESRGFV  108



Lambda      K        H        a         alpha
   0.319    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1771684200


Query= TCONS_00023125

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399041 pfam05743, UEV, UEV domain. This family includes the e...  159     8e-48


>CDD:399041 pfam05743, UEV, UEV domain.  This family includes the eukaryotic 
tumor susceptibility gene 101 protein (TSG101). Altered 
transcripts of this gene have been detected in sporadic breast 
cancers and many other human malignancies. However, the involvement 
of this gene in neoplastic transformation and tumorigenesis 
is still elusive. TSG101 is required for normal cell 
function of embryonic and adult tissues but that this gene 
is not a tumor suppressor for sporadic forms of breast cancer. 
This family is related to the ubiquitin conjugating enzymes.
Length=119

 Score = 159 bits (404),  Expect = 8e-48, Method: Composition-based stats.
 Identities = 60/121 (50%), Positives = 82/121 (68%), Gaps = 2/121 (2%)

Query  33   TYYDVANVLAQYPSLSPRTDVYTYETGFSALLLHLTGTIPVSFRGTVYKFPIAVWIPNTY  92
            T+ D+ NVL ++P+L PRTDVYT+  G S LLL+L GTIPV+++G  Y  PI +W+P+TY
Sbjct  1    TFKDLVNVLRKFPNLKPRTDVYTFNDGSSKLLLNLYGTIPVTYKGNTYNIPILIWLPDTY  60

Query  93   PREPPMVYVTPTQDMAVRVGQHVTLEGRVYHHYLAHWAEAWDRSNLVDFLMILREVFAKE  152
            P  PP+ YV PT  M ++V  HV  +GRVY  YL +W      SNLVD +  L +VF ++
Sbjct  61   PFSPPICYVKPTASMVIKVNHHVDAQGRVYLPYLHNWNHP--SSNLVDLVQELAQVFQED  118

Query  153  P  153
            P
Sbjct  119  P  119



Lambda      K        H        a         alpha
   0.313    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00027490

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399041 pfam05743, UEV, UEV domain. This family includes the e...  152     8e-45


>CDD:399041 pfam05743, UEV, UEV domain.  This family includes the eukaryotic 
tumor susceptibility gene 101 protein (TSG101). Altered 
transcripts of this gene have been detected in sporadic breast 
cancers and many other human malignancies. However, the involvement 
of this gene in neoplastic transformation and tumorigenesis 
is still elusive. TSG101 is required for normal cell 
function of embryonic and adult tissues but that this gene 
is not a tumor suppressor for sporadic forms of breast cancer. 
This family is related to the ubiquitin conjugating enzymes.
Length=119

 Score = 152 bits (385),  Expect = 8e-45, Method: Composition-based stats.
 Identities = 60/145 (41%), Positives = 82/145 (57%), Gaps = 26/145 (18%)

Query  33   TYYDVANVLAQYPSLSPRTDVYTYETGFSALLLHLTGTIPVSFRGTVYKFPIAVWIPNTY  92
            T+ D+ NVL ++P+L PRTDVYT+  G S LLL+L GTIPV+++G  Y  PI +W+P+TY
Sbjct  1    TFKDLVNVLRKFPNLKPRTDVYTFNDGSSKLLLNLYGTIPVTYKGNTYNIPILIWLPDTY  60

Query  93   PREPPMVYVTPTQDMAVRVGQHVTLEGRVYHHYLAHWAEAWDVRLPDTFHQIFRQVNVTD  152
            P  PP+ YV PT  M ++V  HV  +GRVY  YL +W                       
Sbjct  61   PFSPPICYVKPTASMVIKVNHHVDAQGRVYLPYLHNW-----------------------  97

Query  153  LCFRMQRSNLVDFLMILREVFAKEP  177
                   SNLVD +  L +VF ++P
Sbjct  98   ---NHPSSNLVDLVQELAQVFQEDP  119



Lambda      K        H        a         alpha
   0.314    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 661646842


Query= TCONS_00023126

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399041 pfam05743, UEV, UEV domain. This family includes the e...  162     2e-48
CDD:462803 pfam09454, Vps23_core, Vps23 core domain. ESCRT comple...  91.0    4e-23


>CDD:399041 pfam05743, UEV, UEV domain.  This family includes the eukaryotic 
tumor susceptibility gene 101 protein (TSG101). Altered 
transcripts of this gene have been detected in sporadic breast 
cancers and many other human malignancies. However, the involvement 
of this gene in neoplastic transformation and tumorigenesis 
is still elusive. TSG101 is required for normal cell 
function of embryonic and adult tissues but that this gene 
is not a tumor suppressor for sporadic forms of breast cancer. 
This family is related to the ubiquitin conjugating enzymes.
Length=119

 Score = 162 bits (413),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 60/121 (50%), Positives = 82/121 (68%), Gaps = 2/121 (2%)

Query  33   TYYDVANVLAQYPSLSPRTDVYTYETGFSALLLHLTGTIPVSFRGTVYKFPIAVWIPNTY  92
            T+ D+ NVL ++P+L PRTDVYT+  G S LLL+L GTIPV+++G  Y  PI +W+P+TY
Sbjct  1    TFKDLVNVLRKFPNLKPRTDVYTFNDGSSKLLLNLYGTIPVTYKGNTYNIPILIWLPDTY  60

Query  93   PREPPMVYVTPTQDMAVRVGQHVTLEGRVYHHYLAHWAEAWDRSNLVDFLMILREVFAKE  152
            P  PP+ YV PT  M ++V  HV  +GRVY  YL +W      SNLVD +  L +VF ++
Sbjct  61   PFSPPICYVKPTASMVIKVNHHVDAQGRVYLPYLHNWNHP--SSNLVDLVQELAQVFQED  118

Query  153  P  153
            P
Sbjct  119  P  119


>CDD:462803 pfam09454, Vps23_core, Vps23 core domain.  ESCRT complexes form 
the main machinery driving protein sorting from endosomes 
to lysosomes. The core domain of the Vps23 subunit of the heterotrimeric 
ESCRT-I complex is a helical hairpin sandwiched 
in a fan-like formation between two other helical hairpins 
from Vps28 (pfam03997) and Vps37. Vps23 gives ESCRT-I complex 
its stability.
Length=60

 Score = 91.0 bits (227),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 31/60 (52%), Positives = 42/60 (70%), Gaps = 0/60 (0%)

Query  506  EVLVAPTVVGKQLYDLVSEERGIQQAIYALQAALVKGVIGVDTWSRHTRSLAREAFLKRA  565
            EV+VA T +  QL +LV+E++ I+  IY L  AL +GVI +DT+ +  R LARE FLKRA
Sbjct  1    EVVVATTPLSNQLLELVAEDKAIEDTIYLLDKALDRGVIDLDTFLKQVRELAREQFLKRA  60



Lambda      K        H        a         alpha
   0.313    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 727786436


Query= TCONS_00027491

Length=362


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00023127

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462803 pfam09454, Vps23_core, Vps23 core domain. ESCRT comple...  91.0    2e-23


>CDD:462803 pfam09454, Vps23_core, Vps23 core domain.  ESCRT complexes form 
the main machinery driving protein sorting from endosomes 
to lysosomes. The core domain of the Vps23 subunit of the heterotrimeric 
ESCRT-I complex is a helical hairpin sandwiched 
in a fan-like formation between two other helical hairpins 
from Vps28 (pfam03997) and Vps37. Vps23 gives ESCRT-I complex 
its stability.
Length=60

 Score = 91.0 bits (227),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 31/60 (52%), Positives = 42/60 (70%), Gaps = 0/60 (0%)

Query  383  EVLVAPTVVGKQLYDLVSEERGIQQAIYALQAALVKGVIGVDTWSRHTRSLAREAFLKRA  442
            EV+VA T +  QL +LV+E++ I+  IY L  AL +GVI +DT+ +  R LARE FLKRA
Sbjct  1    EVVVATTPLSNQLLELVAEDKAIEDTIYLLDKALDRGVIDLDTFLKQVRELAREQFLKRA  60



Lambda      K        H        a         alpha
   0.311    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00023130

Length=292


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00023129

Length=292


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00027492

Length=292


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00023131

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00023132

Length=365


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00023133

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase. This regio...  214     3e-70
CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal...  119     1e-34


>CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase.  This region is found 
commonly in chitin synthases classes I, II and III. Chitin 
a linear homopolymer of GlcNAc residues, it is an important 
component of the cell wall of fungi and is synthesized on 
the cytoplasmic surface of the cell membrane by membrane bound 
chitin synthases.
Length=163

 Score = 214 bits (548),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 63/128 (49%), Positives = 88/128 (69%), Gaps = 6/128 (5%)

Query  222  YYNEDKTLTSRTLHGVMQNIRDIVNLKKSEFWNKGGPAWQKIVVCLVFDGIDPCDKDTLD  281
             YNED+ L +RTLHGVM+NI  + + K+S+ W   G  W+K+VVC+V DG +  +  TLD
Sbjct  1    MYNEDEILLARTLHGVMKNIAHLCSRKRSKTWGPDG--WKKVVVCIVSDGRNKINPRTLD  58

Query  282  VLATIGVYQDGVMKRDVDGKETVAHIFEYTTQLSVTPNQQLIRPTDDGPSTLPPVQMMFC  341
            +LA +GVYQ+G+ K DV+GK   AH+FEYTTQLSV  + +           + PVQ++FC
Sbjct  59   LLAALGVYQEGIAKNDVNGKPVTAHLFEYTTQLSVDEDLKF----KGNEKGIVPVQIIFC  114

Query  342  LKQKNSKK  349
            LK+KN+KK
Sbjct  115  LKEKNAKK  122


>CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal.  This 
is the N-terminal domain of Chitin synthase (pfam01644).
Length=70

 Score = 119 bits (301),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 43/78 (55%), Positives = 53/78 (68%), Gaps = 8/78 (10%)

Query  144  KVKLVQGSVLSVDYPVPSAIQNAIQAKYRNDLEGGSEEFTHMRYTAATCDPNEFTLHNGY  203
            KVKL  G+++ +D PVPS + NA+  +       GS EFTHMRYTA TCDP++FT  NGY
Sbjct  1    KVKLTNGNLV-LDCPVPSRLLNALPRR------KGSREFTHMRYTAVTCDPDDFT-KNGY  52

Query  204  NLRPAMYNRHTELLIAIT  221
             LR A+Y R TEL I IT
Sbjct  53   TLRQALYGRETELFIVIT  70



Lambda      K        H        a         alpha
   0.314    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00023134

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase. This regio...  126     2e-34
CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  89.0    3e-19


>CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase.  This region is found 
commonly in chitin synthases classes I, II and III. Chitin 
a linear homopolymer of GlcNAc residues, it is an important 
component of the cell wall of fungi and is synthesized on 
the cytoplasmic surface of the cell membrane by membrane bound 
chitin synthases.
Length=163

 Score = 126 bits (318),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 37/53 (70%), Positives = 45/53 (85%), Gaps = 0/53 (0%)

Query  1    MMFCLKQKNSKKINSHRWLFNAFGRILNPEVCILLDAGTKPGPKSLLSLWEAF  53
            ++FCLK+KN+KKINSHRW FNAFG +L P VC+LLD GTKPGP S+  LW+AF
Sbjct  111  IIFCLKEKNAKKINSHRWFFNAFGPLLQPNVCVLLDVGTKPGPTSIYHLWKAF  163


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 89.0 bits (221),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 135/306 (44%), Gaps = 39/306 (13%)

Query  19   LFNAFGRI--LNP---EVCILLDAGTKPGPKSLLSLWEAFYNDKDLGGACGEIH-AMLGK  72
            LF+    +  ++P   E  +++DA TK  P SL  +     +D ++ G CGE   A   +
Sbjct  187  LFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETKIANKRQ  246

Query  73   GWKNLINPLVAAQNFEYKISNILDKPLESSFGYVSVLPGAFSAYRFRAIMGRPLEQYFHG  132
             W   I      Q FEY IS+ L K  ES FG V+ LPG FS YR +A  G        G
Sbjct  247  SWVTAI------QVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKG--------G  292

Query  133  DHTLSKQLGKKGIEGM-------NIFKKNMF-LAEDRILCFELVAKAGSKWHLTYVKASK  184
            D      L    I           + KKN+  L EDR L   L+ K   K    +V  + 
Sbjct  293  DGYWVPILASPDIVEHYSENVVDTLHKKNLLLLGEDRYLT-TLMLKTFPKRKTVFVPQAV  351

Query  185  AETDVPEGAPEFISQRRRWLNGSFAAGIYSLMHFGRMYK-SGHNIVRM-FFLHIQMLYNI  242
             +T  P+     +SQRRRW+N +    +++LM    +    G     M F + I+++  +
Sbjct  352  CKTIAPDTFKVLLSQRRRWINST----VHNLMELVLVRDLCGTFCFSMQFVVFIELIGTV  407

Query  243  FSTVLTWFSLASYWLTTTVIMDLVGTPSDNNGNKAFPFGKTATPIINTIVKYVYLGFLLL  302
                   F++   +L    I+     P       A   G  A  I+ T  K+VY+G++L+
Sbjct  408  VLPAAIAFTV---YLIVISILTPDPVPVIPLVLLAAILGLPAILILLTTRKWVYIGWMLV  464

Query  303  QFILAL  308
             ++LAL
Sbjct  465  -YLLAL  469



Lambda      K        H        a         alpha
   0.325    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 720314296


Query= TCONS_00023135

Length=737
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase. This regio...  307     1e-101
CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal...  82.1    8e-20 
CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  89.8    4e-19 


>CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase.  This region is found 
commonly in chitin synthases classes I, II and III. Chitin 
a linear homopolymer of GlcNAc residues, it is an important 
component of the cell wall of fungi and is synthesized on 
the cytoplasmic surface of the cell membrane by membrane bound 
chitin synthases.
Length=163

 Score = 307 bits (788),  Expect = 1e-101, Method: Composition-based stats.
 Identities = 92/169 (54%), Positives = 121/169 (72%), Gaps = 6/169 (4%)

Query  38   YYNEDKTLTSRTLHGVMQNIRDIVNLKKSEFWNKGGPAWQKIVVCLVFDGIDPCDKDTLD  97
             YNED+ L +RTLHGVM+NI  + + K+S+ W   G  W+K+VVC+V DG +  +  TLD
Sbjct  1    MYNEDEILLARTLHGVMKNIAHLCSRKRSKTWGPDG--WKKVVVCIVSDGRNKINPRTLD  58

Query  98   VLATIGVYQDGVMKRDVDGKETVAHIFEYTTQLSVTPNQQLIRPTDDGPSTLPPVQMMFC  157
            +LA +GVYQ+G+ K DV+GK   AH+FEYTTQLSV  + +           + PVQ++FC
Sbjct  59   LLAALGVYQEGIAKNDVNGKPVTAHLFEYTTQLSVDEDLKF----KGNEKGIVPVQIIFC  114

Query  158  LKQKNSKKINSHRWLFNAFGRILNPEVCILLDAGTKPGPKSLLSLWEAF  206
            LK+KN+KKINSHRW FNAFG +L P VC+LLD GTKPGP S+  LW+AF
Sbjct  115  LKEKNAKKINSHRWFFNAFGPLLQPNVCVLLDVGTKPGPTSIYHLWKAF  163


>CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal.  This 
is the N-terminal domain of Chitin synthase (pfam01644).
Length=70

 Score = 82.1 bits (204),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 25/37 (68%), Positives = 28/37 (76%), Gaps = 1/37 (3%)

Query  1   MRYTAATCDPNEFTLHNGYNLRPAMYNRHTELLIAIT  37
           MRYTA TCDP++FT  NGY LR A+Y R TEL I IT
Sbjct  35  MRYTAVTCDPDDFT-KNGYTLRQALYGRETELFIVIT  70


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 89.8 bits (223),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 135/306 (44%), Gaps = 39/306 (13%)

Query  172  LFNAFGRI--LNP---EVCILLDAGTKPGPKSLLSLWEAFYNDKDLGGACGEIH-AMLGK  225
            LF+    +  ++P   E  +++DA TK  P SL  +     +D ++ G CGE   A   +
Sbjct  187  LFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETKIANKRQ  246

Query  226  GWKNLINPLVAAQNFEYKISNILDKPLESSFGYVSVLPGAFSAYRFRAIMGRPLEQYFHG  285
             W   I      Q FEY IS+ L K  ES FG V+ LPG FS YR +A  G        G
Sbjct  247  SWVTAI------QVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKG--------G  292

Query  286  DHTLSKQLGKKGIEGM-------NIFKKNMF-LAEDRILCFELVAKAGSKWHLTYVKASK  337
            D      L    I           + KKN+  L EDR L   L+ K   K    +V  + 
Sbjct  293  DGYWVPILASPDIVEHYSENVVDTLHKKNLLLLGEDRYLT-TLMLKTFPKRKTVFVPQAV  351

Query  338  AETDVPEGAPEFISQRRRWLNGSFAAGIYSLMHFGRMYK-SGHNIVRM-FFLHIQMLYNI  395
             +T  P+     +SQRRRW+N +    +++LM    +    G     M F + I+++  +
Sbjct  352  CKTIAPDTFKVLLSQRRRWINST----VHNLMELVLVRDLCGTFCFSMQFVVFIELIGTV  407

Query  396  FSTVLTWFSLASYWLTTTVIMDLVGTPSDNNGNKAFPFGKTATPIINTIVKYVYLGFLLL  455
                   F++   +L    I+     P       A   G  A  I+ T  K+VY+G++L+
Sbjct  408  VLPAAIAFTV---YLIVISILTPDPVPVIPLVLLAAILGLPAILILLTTRKWVYIGWMLV  464

Query  456  QFILAL  461
             ++LAL
Sbjct  465  -YLLAL  469



Lambda      K        H        a         alpha
   0.323    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 935662736


Query= TCONS_00023137

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase. This regio...  309     5e-104
CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal...  120     1e-33 
CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  91.4    7e-20 


>CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase.  This region is found 
commonly in chitin synthases classes I, II and III. Chitin 
a linear homopolymer of GlcNAc residues, it is an important 
component of the cell wall of fungi and is synthesized on 
the cytoplasmic surface of the cell membrane by membrane bound 
chitin synthases.
Length=163

 Score = 309 bits (795),  Expect = 5e-104, Method: Composition-based stats.
 Identities = 92/169 (54%), Positives = 121/169 (72%), Gaps = 6/169 (4%)

Query  222  YYNEDKTLTSRTLHGVMQNIRDIVNLKKSEFWNKGGPAWQKIVVCLVFDGIDPCDKDTLD  281
             YNED+ L +RTLHGVM+NI  + + K+S+ W   G  W+K+VVC+V DG +  +  TLD
Sbjct  1    MYNEDEILLARTLHGVMKNIAHLCSRKRSKTWGPDG--WKKVVVCIVSDGRNKINPRTLD  58

Query  282  VLATIGVYQDGVMKRDVDGKETVAHIFEYTTQLSVTPNQQLIRPTDDGPSTLPPVQMMFC  341
            +LA +GVYQ+G+ K DV+GK   AH+FEYTTQLSV  + +           + PVQ++FC
Sbjct  59   LLAALGVYQEGIAKNDVNGKPVTAHLFEYTTQLSVDEDLKF----KGNEKGIVPVQIIFC  114

Query  342  LKQKNSKKINSHRWLFNAFGRILNPEVCILLDAGTKPGPKSLLSLWEAF  390
            LK+KN+KKINSHRW FNAFG +L P VC+LLD GTKPGP S+  LW+AF
Sbjct  115  LKEKNAKKINSHRWFFNAFGPLLQPNVCVLLDVGTKPGPTSIYHLWKAF  163


>CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal.  This 
is the N-terminal domain of Chitin synthase (pfam01644).
Length=70

 Score = 120 bits (304),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 43/78 (55%), Positives = 53/78 (68%), Gaps = 8/78 (10%)

Query  144  KVKLVQGSVLSVDYPVPSAIQNAIQAKYRNDLEGGSEEFTHMRYTAATCDPNEFTLHNGY  203
            KVKL  G+++ +D PVPS + NA+  +       GS EFTHMRYTA TCDP++FT  NGY
Sbjct  1    KVKLTNGNLV-LDCPVPSRLLNALPRR------KGSREFTHMRYTAVTCDPDDFT-KNGY  52

Query  204  NLRPAMYNRHTELLIAIT  221
             LR A+Y R TEL I IT
Sbjct  53   TLRQALYGRETELFIVIT  70


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 91.4 bits (227),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 76/267 (28%), Positives = 115/267 (43%), Gaps = 35/267 (13%)

Query  356  LFNAFGRI--LNP---EVCILLDAGTKPGPKSLLSLWEAFYNDKDLGGACGEIH-AMLGK  409
            LF+    +  ++P   E  +++DA TK  P SL  +     +D ++ G CGE   A   +
Sbjct  187  LFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETKIANKRQ  246

Query  410  GWKNLINPLVAAQNFEYKISNILDKPLESSFGYVSVLPGAFSAYRFRAIMGRPLEQYFHG  469
             W   I      Q FEY IS+ L K  ES FG V+ LPG FS YR +A  G        G
Sbjct  247  SWVTAI------QVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKG--------G  292

Query  470  DHTLSKQLGKKGIEGM-------NIFKKNMF-LAEDRILCFELVAKAGSKWHLTYVKASK  521
            D      L    I           + KKN+  L EDR L   L+ K   K    +V  + 
Sbjct  293  DGYWVPILASPDIVEHYSENVVDTLHKKNLLLLGEDRYLT-TLMLKTFPKRKTVFVPQAV  351

Query  522  AETDVPEGAPEFISQRRRWLNGSFAAGIYSLMHFGRMYK-SGHNIVRM-FFLHIQMLYNI  579
             +T  P+     +SQRRRW+N +    +++LM    +    G     M F + I+++  +
Sbjct  352  CKTIAPDTFKVLLSQRRRWINST----VHNLMELVLVRDLCGTFCFSMQFVVFIELIGTV  407

Query  580  FSTVLTWFSLGKLIFILSKRVPPPTGP  606
                   F++  ++  +    P P  P
Sbjct  408  VLPAAIAFTVYLIVISILTPDPVPVIP  434



Lambda      K        H        a         alpha
   0.318    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 772619276


Query= TCONS_00023136

Length=911
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase. This regio...  309     6e-101
CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal...  120     3e-33 
CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  91.0    2e-19 


>CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase.  This region is found 
commonly in chitin synthases classes I, II and III. Chitin 
a linear homopolymer of GlcNAc residues, it is an important 
component of the cell wall of fungi and is synthesized on 
the cytoplasmic surface of the cell membrane by membrane bound 
chitin synthases.
Length=163

 Score = 309 bits (795),  Expect = 6e-101, Method: Composition-based stats.
 Identities = 92/169 (54%), Positives = 121/169 (72%), Gaps = 6/169 (4%)

Query  222  YYNEDKTLTSRTLHGVMQNIRDIVNLKKSEFWNKGGPAWQKIVVCLVFDGIDPCDKDTLD  281
             YNED+ L +RTLHGVM+NI  + + K+S+ W   G  W+K+VVC+V DG +  +  TLD
Sbjct  1    MYNEDEILLARTLHGVMKNIAHLCSRKRSKTWGPDG--WKKVVVCIVSDGRNKINPRTLD  58

Query  282  VLATIGVYQDGVMKRDVDGKETVAHIFEYTTQLSVTPNQQLIRPTDDGPSTLPPVQMMFC  341
            +LA +GVYQ+G+ K DV+GK   AH+FEYTTQLSV  + +           + PVQ++FC
Sbjct  59   LLAALGVYQEGIAKNDVNGKPVTAHLFEYTTQLSVDEDLKF----KGNEKGIVPVQIIFC  114

Query  342  LKQKNSKKINSHRWLFNAFGRILNPEVCILLDAGTKPGPKSLLSLWEAF  390
            LK+KN+KKINSHRW FNAFG +L P VC+LLD GTKPGP S+  LW+AF
Sbjct  115  LKEKNAKKINSHRWFFNAFGPLLQPNVCVLLDVGTKPGPTSIYHLWKAF  163


>CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal.  This 
is the N-terminal domain of Chitin synthase (pfam01644).
Length=70

 Score = 120 bits (303),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 43/78 (55%), Positives = 53/78 (68%), Gaps = 8/78 (10%)

Query  144  KVKLVQGSVLSVDYPVPSAIQNAIQAKYRNDLEGGSEEFTHMRYTAATCDPNEFTLHNGY  203
            KVKL  G+++ +D PVPS + NA+  +       GS EFTHMRYTA TCDP++FT  NGY
Sbjct  1    KVKLTNGNLV-LDCPVPSRLLNALPRR------KGSREFTHMRYTAVTCDPDDFT-KNGY  52

Query  204  NLRPAMYNRHTELLIAIT  221
             LR A+Y R TEL I IT
Sbjct  53   TLRQALYGRETELFIVIT  70


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 91.0 bits (226),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 135/306 (44%), Gaps = 39/306 (13%)

Query  356  LFNAFGRI--LNP---EVCILLDAGTKPGPKSLLSLWEAFYNDKDLGGACGEIH-AMLGK  409
            LF+    +  ++P   E  +++DA TK  P SL  +     +D ++ G CGE   A   +
Sbjct  187  LFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETKIANKRQ  246

Query  410  GWKNLINPLVAAQNFEYKISNILDKPLESSFGYVSVLPGAFSAYRFRAIMGRPLEQYFHG  469
             W   I      Q FEY IS+ L K  ES FG V+ LPG FS YR +A  G        G
Sbjct  247  SWVTAI------QVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKG--------G  292

Query  470  DHTLSKQLGKKGIEGM-------NIFKKNMF-LAEDRILCFELVAKAGSKWHLTYVKASK  521
            D      L    I           + KKN+  L EDR L   L+ K   K    +V  + 
Sbjct  293  DGYWVPILASPDIVEHYSENVVDTLHKKNLLLLGEDRYLT-TLMLKTFPKRKTVFVPQAV  351

Query  522  AETDVPEGAPEFISQRRRWLNGSFAAGIYSLMHFGRMYK-SGHNIVRM-FFLHIQMLYNI  579
             +T  P+     +SQRRRW+N +    +++LM    +    G     M F + I+++  +
Sbjct  352  CKTIAPDTFKVLLSQRRRWINST----VHNLMELVLVRDLCGTFCFSMQFVVFIELIGTV  407

Query  580  FSTVLTWFSLASYWLTTTVIMDLVGTPSDNNGNKAFPFGKTATPIINTIVKYVYLGFLLL  639
                   F++   +L    I+     P       A   G  A  I+ T  K+VY+G++L+
Sbjct  408  VLPAAIAFTV---YLIVISILTPDPVPVIPLVLLAAILGLPAILILLTTRKWVYIGWMLV  464

Query  640  QFILAL  645
             ++LAL
Sbjct  465  -YLLAL  469



Lambda      K        H        a         alpha
   0.321    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0861    0.140     1.90     42.6     43.6 

Effective search space used: 1171379424


Query= TCONS_00027493

Length=772
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase. This regio...  306     6e-101
CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  89.4    5e-19 
CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal...  71.0    6e-16 


>CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase.  This region is found 
commonly in chitin synthases classes I, II and III. Chitin 
a linear homopolymer of GlcNAc residues, it is an important 
component of the cell wall of fungi and is synthesized on 
the cytoplasmic surface of the cell membrane by membrane bound 
chitin synthases.
Length=163

 Score = 306 bits (786),  Expect = 6e-101, Method: Composition-based stats.
 Identities = 92/169 (54%), Positives = 121/169 (72%), Gaps = 6/169 (4%)

Query  83   YYNEDKTLTSRTLHGVMQNIRDIVNLKKSEFWNKGGPAWQKIVVCLVFDGIDPCDKDTLD  142
             YNED+ L +RTLHGVM+NI  + + K+S+ W   G  W+K+VVC+V DG +  +  TLD
Sbjct  1    MYNEDEILLARTLHGVMKNIAHLCSRKRSKTWGPDG--WKKVVVCIVSDGRNKINPRTLD  58

Query  143  VLATIGVYQDGVMKRDVDGKETVAHIFEYTTQLSVTPNQQLIRPTDDGPSTLPPVQMMFC  202
            +LA +GVYQ+G+ K DV+GK   AH+FEYTTQLSV  + +           + PVQ++FC
Sbjct  59   LLAALGVYQEGIAKNDVNGKPVTAHLFEYTTQLSVDEDLKF----KGNEKGIVPVQIIFC  114

Query  203  LKQKNSKKINSHRWLFNAFGRILNPEVCILLDAGTKPGPKSLLSLWEAF  251
            LK+KN+KKINSHRW FNAFG +L P VC+LLD GTKPGP S+  LW+AF
Sbjct  115  LKEKNAKKINSHRWFFNAFGPLLQPNVCVLLDVGTKPGPTSIYHLWKAF  163


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 89.4 bits (222),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 135/306 (44%), Gaps = 39/306 (13%)

Query  217  LFNAFGRI--LNP---EVCILLDAGTKPGPKSLLSLWEAFYNDKDLGGACGEIH-AMLGK  270
            LF+    +  ++P   E  +++DA TK  P SL  +     +D ++ G CGE   A   +
Sbjct  187  LFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETKIANKRQ  246

Query  271  GWKNLINPLVAAQNFEYKISNILDKPLESSFGYVSVLPGAFSAYRFRAIMGRPLEQYFHG  330
             W   I      Q FEY IS+ L K  ES FG V+ LPG FS YR +A  G        G
Sbjct  247  SWVTAI------QVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKG--------G  292

Query  331  DHTLSKQLGKKGIEGM-------NIFKKNMF-LAEDRILCFELVAKAGSKWHLTYVKASK  382
            D      L    I           + KKN+  L EDR L   L+ K   K    +V  + 
Sbjct  293  DGYWVPILASPDIVEHYSENVVDTLHKKNLLLLGEDRYLT-TLMLKTFPKRKTVFVPQAV  351

Query  383  AETDVPEGAPEFISQRRRWLNGSFAAGIYSLMHFGRMYK-SGHNIVRM-FFLHIQMLYNI  440
             +T  P+     +SQRRRW+N +    +++LM    +    G     M F + I+++  +
Sbjct  352  CKTIAPDTFKVLLSQRRRWINST----VHNLMELVLVRDLCGTFCFSMQFVVFIELIGTV  407

Query  441  FSTVLTWFSLASYWLTTTVIMDLVGTPSDNNGNKAFPFGKTATPIINTIVKYVYLGFLLL  500
                   F++   +L    I+     P       A   G  A  I+ T  K+VY+G++L+
Sbjct  408  VLPAAIAFTV---YLIVISILTPDPVPVIPLVLLAAILGLPAILILLTTRKWVYIGWMLV  464

Query  501  QFILAL  506
             ++LAL
Sbjct  465  -YLLAL  469


>CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal.  This 
is the N-terminal domain of Chitin synthase (pfam01644).
Length=70

 Score = 71.0 bits (175),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 22/34 (65%), Positives = 25/34 (74%), Gaps = 1/34 (3%)

Query  49  TAATCDPNEFTLHNGYNLRPAMYNRHTELLIAIT  82
           TA TCDP++FT  NGY LR A+Y R TEL I IT
Sbjct  38  TAVTCDPDDFT-KNGYTLRQALYGRETELFIVIT  70



Lambda      K        H        a         alpha
   0.324    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 986593056


Query= TCONS_00027494

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase. This regio...  126     2e-34
CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  89.0    3e-19


>CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase.  This region is found 
commonly in chitin synthases classes I, II and III. Chitin 
a linear homopolymer of GlcNAc residues, it is an important 
component of the cell wall of fungi and is synthesized on 
the cytoplasmic surface of the cell membrane by membrane bound 
chitin synthases.
Length=163

 Score = 126 bits (318),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 37/53 (70%), Positives = 45/53 (85%), Gaps = 0/53 (0%)

Query  1    MMFCLKQKNSKKINSHRWLFNAFGRILNPEVCILLDAGTKPGPKSLLSLWEAF  53
            ++FCLK+KN+KKINSHRW FNAFG +L P VC+LLD GTKPGP S+  LW+AF
Sbjct  111  IIFCLKEKNAKKINSHRWFFNAFGPLLQPNVCVLLDVGTKPGPTSIYHLWKAF  163


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 89.0 bits (221),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 135/306 (44%), Gaps = 39/306 (13%)

Query  19   LFNAFGRI--LNP---EVCILLDAGTKPGPKSLLSLWEAFYNDKDLGGACGEIH-AMLGK  72
            LF+    +  ++P   E  +++DA TK  P SL  +     +D ++ G CGE   A   +
Sbjct  187  LFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETKIANKRQ  246

Query  73   GWKNLINPLVAAQNFEYKISNILDKPLESSFGYVSVLPGAFSAYRFRAIMGRPLEQYFHG  132
             W   I      Q FEY IS+ L K  ES FG V+ LPG FS YR +A  G        G
Sbjct  247  SWVTAI------QVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKG--------G  292

Query  133  DHTLSKQLGKKGIEGM-------NIFKKNMF-LAEDRILCFELVAKAGSKWHLTYVKASK  184
            D      L    I           + KKN+  L EDR L   L+ K   K    +V  + 
Sbjct  293  DGYWVPILASPDIVEHYSENVVDTLHKKNLLLLGEDRYLT-TLMLKTFPKRKTVFVPQAV  351

Query  185  AETDVPEGAPEFISQRRRWLNGSFAAGIYSLMHFGRMYK-SGHNIVRM-FFLHIQMLYNI  242
             +T  P+     +SQRRRW+N +    +++LM    +    G     M F + I+++  +
Sbjct  352  CKTIAPDTFKVLLSQRRRWINST----VHNLMELVLVRDLCGTFCFSMQFVVFIELIGTV  407

Query  243  FSTVLTWFSLASYWLTTTVIMDLVGTPSDNNGNKAFPFGKTATPIINTIVKYVYLGFLLL  302
                   F++   +L    I+     P       A   G  A  I+ T  K+VY+G++L+
Sbjct  408  VLPAAIAFTV---YLIVISILTPDPVPVIPLVLLAAILGLPAILILLTTRKWVYIGWMLV  464

Query  303  QFILAL  308
             ++LAL
Sbjct  465  -YLLAL  469



Lambda      K        H        a         alpha
   0.325    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 720314296


Query= TCONS_00023138

Length=921
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase. This regio...  309     7e-101
CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal...  120     3e-33 
CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  91.0    2e-19 


>CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase.  This region is found 
commonly in chitin synthases classes I, II and III. Chitin 
a linear homopolymer of GlcNAc residues, it is an important 
component of the cell wall of fungi and is synthesized on 
the cytoplasmic surface of the cell membrane by membrane bound 
chitin synthases.
Length=163

 Score = 309 bits (795),  Expect = 7e-101, Method: Composition-based stats.
 Identities = 92/169 (54%), Positives = 121/169 (72%), Gaps = 6/169 (4%)

Query  222  YYNEDKTLTSRTLHGVMQNIRDIVNLKKSEFWNKGGPAWQKIVVCLVFDGIDPCDKDTLD  281
             YNED+ L +RTLHGVM+NI  + + K+S+ W   G  W+K+VVC+V DG +  +  TLD
Sbjct  1    MYNEDEILLARTLHGVMKNIAHLCSRKRSKTWGPDG--WKKVVVCIVSDGRNKINPRTLD  58

Query  282  VLATIGVYQDGVMKRDVDGKETVAHIFEYTTQLSVTPNQQLIRPTDDGPSTLPPVQMMFC  341
            +LA +GVYQ+G+ K DV+GK   AH+FEYTTQLSV  + +           + PVQ++FC
Sbjct  59   LLAALGVYQEGIAKNDVNGKPVTAHLFEYTTQLSVDEDLKF----KGNEKGIVPVQIIFC  114

Query  342  LKQKNSKKINSHRWLFNAFGRILNPEVCILLDAGTKPGPKSLLSLWEAF  390
            LK+KN+KKINSHRW FNAFG +L P VC+LLD GTKPGP S+  LW+AF
Sbjct  115  LKEKNAKKINSHRWFFNAFGPLLQPNVCVLLDVGTKPGPTSIYHLWKAF  163


>CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal.  This 
is the N-terminal domain of Chitin synthase (pfam01644).
Length=70

 Score = 120 bits (303),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 43/78 (55%), Positives = 53/78 (68%), Gaps = 8/78 (10%)

Query  144  KVKLVQGSVLSVDYPVPSAIQNAIQAKYRNDLEGGSEEFTHMRYTAATCDPNEFTLHNGY  203
            KVKL  G+++ +D PVPS + NA+  +       GS EFTHMRYTA TCDP++FT  NGY
Sbjct  1    KVKLTNGNLV-LDCPVPSRLLNALPRR------KGSREFTHMRYTAVTCDPDDFT-KNGY  52

Query  204  NLRPAMYNRHTELLIAIT  221
             LR A+Y R TEL I IT
Sbjct  53   TLRQALYGRETELFIVIT  70


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 91.0 bits (226),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 135/306 (44%), Gaps = 39/306 (13%)

Query  356  LFNAFGRI--LNP---EVCILLDAGTKPGPKSLLSLWEAFYNDKDLGGACGEIH-AMLGK  409
            LF+    +  ++P   E  +++DA TK  P SL  +     +D ++ G CGE   A   +
Sbjct  187  LFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETKIANKRQ  246

Query  410  GWKNLINPLVAAQNFEYKISNILDKPLESSFGYVSVLPGAFSAYRFRAIMGRPLEQYFHG  469
             W   I      Q FEY IS+ L K  ES FG V+ LPG FS YR +A  G        G
Sbjct  247  SWVTAI------QVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKG--------G  292

Query  470  DHTLSKQLGKKGIEGM-------NIFKKNMF-LAEDRILCFELVAKAGSKWHLTYVKASK  521
            D      L    I           + KKN+  L EDR L   L+ K   K    +V  + 
Sbjct  293  DGYWVPILASPDIVEHYSENVVDTLHKKNLLLLGEDRYLT-TLMLKTFPKRKTVFVPQAV  351

Query  522  AETDVPEGAPEFISQRRRWLNGSFAAGIYSLMHFGRMYK-SGHNIVRM-FFLHIQMLYNI  579
             +T  P+     +SQRRRW+N +    +++LM    +    G     M F + I+++  +
Sbjct  352  CKTIAPDTFKVLLSQRRRWINST----VHNLMELVLVRDLCGTFCFSMQFVVFIELIGTV  407

Query  580  FSTVLTWFSLASYWLTTTVIMDLVGTPSDNNGNKAFPFGKTATPIINTIVKYVYLGFLLL  639
                   F++   +L    I+     P       A   G  A  I+ T  K+VY+G++L+
Sbjct  408  VLPAAIAFTV---YLIVISILTPDPVPVIPLVLLAAILGLPAILILLTTRKWVYIGWMLV  464

Query  640  QFILAL  645
             ++LAL
Sbjct  465  -YLLAL  469



Lambda      K        H        a         alpha
   0.320    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1185734564


Query= TCONS_00027495

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  104     2e-30


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 104 bits (262),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 14/111 (13%)

Query  34   RVQRDLQELT-LGSTMKMNFPNPDDILNFTLTIE-PDEGMYKGGAFHFNFSVNQNFPHDP  91
            R+Q++L+EL           P  D++  + +TI  PD   Y+GG F  +    +++P  P
Sbjct  1    RLQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKP  60

Query  92   PKVKCTQKIYHPNIDLEGNVCLN------------LNAVIVGMQFLFLEPN  130
            PKVK T KIYHPN+D  G VCL+            L  V++ +Q L  EPN
Sbjct  61   PKVKFTTKIYHPNVDSSGEVCLDILKDERWSPALTLEQVLLSIQSLLSEPN  111



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00027496

Length=159
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  145     6e-46


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 145 bits (367),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 52/111 (47%), Positives = 67/111 (60%), Gaps = 2/111 (2%)

Query  51   NFPNPDDILNFTLTIE-PDEGMYKGGAFHFNFSVNQNFPHDPPKVKCTQKIYHPNIDLEG  109
              P  D++  + +TI  PD   Y+GG F  +    +++P  PPKVK T KIYHPN+D  G
Sbjct  19   AGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVDSSG  78

Query  110  NVCLNILR-EDWKPVLNLNAVIVGMQFLFLEPNASDPLNKEAADDLRTNRE  159
             VCL+IL+ E W P L L  V++ +Q L  EPN  DPLN EAA   R NRE
Sbjct  79   EVCLDILKDERWSPALTLEQVLLSIQSLLSEPNPEDPLNAEAAKLYRKNRE  129



Lambda      K        H        a         alpha
   0.317    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00023139

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  146     9e-47


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 146 bits (370),  Expect = 9e-47, Method: Composition-based stats.
 Identities = 53/115 (46%), Positives = 70/115 (61%), Gaps = 2/115 (2%)

Query  24   NFPNPDDILNFTLTIE-PDEGMYKGGAFHFNFSVNQNFPHDPPKVKCTQKIYHPNIDLEG  82
              P  D++  + +TI  PD   Y+GG F  +    +++P  PPKVK T KIYHPN+D  G
Sbjct  19   AGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVDSSG  78

Query  83   NVCLNILR-EDWKPVLNLNAVIVGMQFLFLEPNASDPLNKEAADDLRTNREGFKR  136
             VCL+IL+ E W P L L  V++ +Q L  EPN  DPLN EAA   R NRE F++
Sbjct  79   EVCLDILKDERWSPALTLEQVLLSIQSLLSEPNPEDPLNAEAAKLYRKNREEFEK  133



Lambda      K        H        a         alpha
   0.321    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00027497

Length=98
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  112     5e-34


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 112 bits (282),  Expect = 5e-34, Method: Composition-based stats.
 Identities = 38/91 (42%), Positives = 54/91 (59%), Gaps = 2/91 (2%)

Query  4    NFPNPDDILNFTLTIE-PDEGMYKGGAFHFNFSVNQNFPHDPPKVKCTQKIYHPNIDLEG  62
              P  D++  + +TI  PD   Y+GG F  +    +++P  PPKVK T KIYHPN+D  G
Sbjct  19   AGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVDSSG  78

Query  63   NVCLNILR-EDWKPVLNLNAVIVGMQVGLRD  92
             VCL+IL+ E W P L L  V++ +Q  L +
Sbjct  79   EVCLDILKDERWSPALTLEQVLLSIQSLLSE  109



Lambda      K        H        a         alpha
   0.324    0.144    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00023143

Length=184
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  164     3e-53


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 164 bits (417),  Expect = 3e-53, Method: Composition-based stats.
 Identities = 60/139 (43%), Positives = 82/139 (59%), Gaps = 3/139 (2%)

Query  34   RVQRDLQELT-LGSTMKMNFPNPDDILNFTLTIE-PDEGMYKGGAFHFNFSVNQNFPHDP  91
            R+Q++L+EL           P  D++  + +TI  PD   Y+GG F  +    +++P  P
Sbjct  1    RLQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKP  60

Query  92   PKVKCTQKIYHPNIDLEGNVCLNILR-EDWKPVLNLNAVIVGMQFLFLEPNASDPLNKEA  150
            PKVK T KIYHPN+D  G VCL+IL+ E W P L L  V++ +Q L  EPN  DPLN EA
Sbjct  61   PKVKFTTKIYHPNVDSSGEVCLDILKDERWSPALTLEQVLLSIQSLLSEPNPEDPLNAEA  120

Query  151  ADDLRTNREGFKRNVRTAM  169
            A   R NRE F++ VR  +
Sbjct  121  AKLYRKNREEFEKKVREYV  139



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00027498

Length=184
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  164     3e-53


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 164 bits (417),  Expect = 3e-53, Method: Composition-based stats.
 Identities = 60/139 (43%), Positives = 82/139 (59%), Gaps = 3/139 (2%)

Query  34   RVQRDLQELT-LGSTMKMNFPNPDDILNFTLTIE-PDEGMYKGGAFHFNFSVNQNFPHDP  91
            R+Q++L+EL           P  D++  + +TI  PD   Y+GG F  +    +++P  P
Sbjct  1    RLQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKP  60

Query  92   PKVKCTQKIYHPNIDLEGNVCLNILR-EDWKPVLNLNAVIVGMQFLFLEPNASDPLNKEA  150
            PKVK T KIYHPN+D  G VCL+IL+ E W P L L  V++ +Q L  EPN  DPLN EA
Sbjct  61   PKVKFTTKIYHPNVDSSGEVCLDILKDERWSPALTLEQVLLSIQSLLSEPNPEDPLNAEA  120

Query  151  ADDLRTNREGFKRNVRTAM  169
            A   R NRE F++ VR  +
Sbjct  121  AKLYRKNREEFEKKVREYV  139



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00023140

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:285265 pfam07991, IlvN, Acetohydroxy acid isomeroreductase, N...  193     4e-60
CDD:460215 pfam01450, IlvC, Acetohydroxy acid isomeroreductase, c...  159     1e-47


>CDD:285265 pfam07991, IlvN, Acetohydroxy acid isomeroreductase, NADPH-binding 
domain.  Acetohydroxy acid isomeroreductase catalyzes 
the conversion of acetohydroxy acids into dihydroxy valerates. 
This reaction is the second in the synthetic pathway of the 
essential branched side chain amino acids valine and isoleucine. 
This N-terminal region of the enzyme carries the binding-site 
for NADPH. The active-site for enzymatic activity 
lies in the C-terminal part, IlvC, pfam01450.
Length=165

 Score = 193 bits (493),  Expect = 4e-60, Method: Composition-based stats.
 Identities = 74/169 (44%), Positives = 107/169 (63%), Gaps = 8/169 (5%)

Query  186  YFKNDTLALIGYGSQGHGQGLNLRDQGLNVIVGVRKDGASWKEAIQDGWIPGKNLFDLTE  245
              K   +A+IGYGSQGH   LNLRD G+NVIVG+R+   SWK+A +DG+     ++ + E
Sbjct  1    VLKGKKIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSKSWKKAKKDGF----EVYTVAE  56

Query  246  AVQKGTIVMNLLSDAAQSETWPT-LKPLITKGKTLYFSHGFSPVFKELTKVDVPKDVDVI  304
            A +K  ++M L+ D  Q+E +   + P + +G  L F+HGF+  F +   +  PKDVDVI
Sbjct  57   AAKKADVIMILIPDEVQAEVYEEEIAPNLKEGAALAFAHGFNIHFGQ---IKPPKDVDVI  113

Query  305  LVAPKGSGRTVRTLFREGRGINSSIAVYQDVTGKAKEKAIAMGVAVGSG  353
            +VAPKG G  VR  + EG G+ + IAV+QD +GKAK+ A+A    +G  
Sbjct  114  MVAPKGPGHLVRREYEEGGGVPALIAVHQDASGKAKDLALAYAKGIGGT  162


>CDD:460215 pfam01450, IlvC, Acetohydroxy acid isomeroreductase, catalytic 
domain.  Acetohydroxy acid isomeroreductase catalyzes the 
conversion of acetohydroxy acids into dihydroxy valerates. This 
reaction is the second in the synthetic pathway of the essential 
branched side chain amino acids valine and isoleucine.
Length=138

 Score = 159 bits (406),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 38/141 (27%), Positives = 67/141 (48%), Gaps = 4/141 (3%)

Query  361  EKEVYSDLYGERGCLMGGIHGMFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGANG  420
            ++E  +DL+GE+  L GG+ G+  A +E L E G+ P  A+ E + E  + +  LI   G
Sbjct  1    KEETETDLFGEQAVLCGGVTGLVKAGFETLVEAGYQPEAAYFECLHE-LKLIVDLIYEGG  59

Query  421  MDWMYAACSTTARRGAIDWSSRF-KDTLKPIFNELYDSVRDGTETKRSLEYNSQKDYREK  479
            +  M  + S TA  G +    R   D  K +  E+ D ++ G   K  +     +  R +
Sbjct  60   IAGMRYSISDTAEYGDLTRGPRVIYDATKELMKEILDEIQSGEFAKEWILEY--QAGRPE  117

Query  480  YEKEMQDIRDLEIWRAGKAVR  500
             +   ++  +  I + GK +R
Sbjct  118  LKALRREEAEHPIEKVGKELR  138



Lambda      K        H        a         alpha
   0.317    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 619252994


Query= TCONS_00023142

Length=179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  164     2e-53


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 164 bits (418),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 60/139 (43%), Positives = 82/139 (59%), Gaps = 3/139 (2%)

Query  29   RVQRDLQELT-LGSTMKMNFPNPDDILNFTLTIE-PDEGMYKGGAFHFNFSVNQNFPHDP  86
            R+Q++L+EL           P  D++  + +TI  PD   Y+GG F  +    +++P  P
Sbjct  1    RLQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKP  60

Query  87   PKVKCTQKIYHPNIDLEGNVCLNILR-EDWKPVLNLNAVIVGMQFLFLEPNASDPLNKEA  145
            PKVK T KIYHPN+D  G VCL+IL+ E W P L L  V++ +Q L  EPN  DPLN EA
Sbjct  61   PKVKFTTKIYHPNVDSSGEVCLDILKDERWSPALTLEQVLLSIQSLLSEPNPEDPLNAEA  120

Query  146  ADDLRTNREGFKRNVRTAM  164
            A   R NRE F++ VR  +
Sbjct  121  AKLYRKNREEFEKKVREYV  139



Lambda      K        H        a         alpha
   0.319    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00023141

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  155     2e-50


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 155 bits (395),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 55/121 (45%), Positives = 73/121 (60%), Gaps = 2/121 (2%)

Query  4    NFPNPDDILNFTLTIE-PDEGMYKGGAFHFNFSVNQNFPHDPPKVKCTQKIYHPNIDLEG  62
              P  D++  + +TI  PD   Y+GG F  +    +++P  PPKVK T KIYHPN+D  G
Sbjct  19   AGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVDSSG  78

Query  63   NVCLNILR-EDWKPVLNLNAVIVGMQFLFLEPNASDPLNKEAADDLRTNREGFKRNVRTA  121
             VCL+IL+ E W P L L  V++ +Q L  EPN  DPLN EAA   R NRE F++ VR  
Sbjct  79   EVCLDILKDERWSPALTLEQVLLSIQSLLSEPNPEDPLNAEAAKLYRKNREEFEKKVREY  138

Query  122  M  122
            +
Sbjct  139  V  139



Lambda      K        H        a         alpha
   0.321    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00023144

Length=184
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  158     6e-51


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 158 bits (403),  Expect = 6e-51, Method: Composition-based stats.
 Identities = 59/139 (42%), Positives = 80/139 (58%), Gaps = 3/139 (2%)

Query  34   RVQRGTEELT-LGSTMKMNFPNPDDILNFTLTIE-PDEGMYKGGAFHFNFSVNQNFPHDP  91
            R+Q+  +EL           P  D++  + +TI  PD   Y+GG F  +    +++P  P
Sbjct  1    RLQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKP  60

Query  92   PKVKCTQKIYHPNIDLEGNVCLNILR-EDWKPVLNLNAVIVGMQFLFLEPNASDPLNKEA  150
            PKVK T KIYHPN+D  G VCL+IL+ E W P L L  V++ +Q L  EPN  DPLN EA
Sbjct  61   PKVKFTTKIYHPNVDSSGEVCLDILKDERWSPALTLEQVLLSIQSLLSEPNPEDPLNAEA  120

Query  151  ADDLRTNREGFKRNVRTAM  169
            A   R NRE F++ VR  +
Sbjct  121  AKLYRKNREEFEKKVREYV  139



Lambda      K        H        a         alpha
   0.318    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00027499

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  155     2e-50


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 155 bits (395),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 55/121 (45%), Positives = 73/121 (60%), Gaps = 2/121 (2%)

Query  4    NFPNPDDILNFTLTIE-PDEGMYKGGAFHFNFSVNQNFPHDPPKVKCTQKIYHPNIDLEG  62
              P  D++  + +TI  PD   Y+GG F  +    +++P  PPKVK T KIYHPN+D  G
Sbjct  19   AGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVDSSG  78

Query  63   NVCLNILR-EDWKPVLNLNAVIVGMQFLFLEPNASDPLNKEAADDLRTNREGFKRNVRTA  121
             VCL+IL+ E W P L L  V++ +Q L  EPN  DPLN EAA   R NRE F++ VR  
Sbjct  79   EVCLDILKDERWSPALTLEQVLLSIQSLLSEPNPEDPLNAEAAKLYRKNREEFEKKVREY  138

Query  122  M  122
            +
Sbjct  139  V  139



Lambda      K        H        a         alpha
   0.321    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00023145

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  164     3e-53


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 164 bits (417),  Expect = 3e-53, Method: Composition-based stats.
 Identities = 60/139 (43%), Positives = 82/139 (59%), Gaps = 3/139 (2%)

Query  33   RVQRDLQELT-LGSTMKMNFPNPDDILNFTLTIE-PDEGMYKGGAFHFNFSVNQNFPHDP  90
            R+Q++L+EL           P  D++  + +TI  PD   Y+GG F  +    +++P  P
Sbjct  1    RLQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKP  60

Query  91   PKVKCTQKIYHPNIDLEGNVCLNILR-EDWKPVLNLNAVIVGMQFLFLEPNASDPLNKEA  149
            PKVK T KIYHPN+D  G VCL+IL+ E W P L L  V++ +Q L  EPN  DPLN EA
Sbjct  61   PKVKFTTKIYHPNVDSSGEVCLDILKDERWSPALTLEQVLLSIQSLLSEPNPEDPLNAEA  120

Query  150  ADDLRTNREGFKRNVRTAM  168
            A   R NRE F++ VR  +
Sbjct  121  AKLYRKNREEFEKKVREYV  139



Lambda      K        H        a         alpha
   0.318    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00023146

Length=159
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  151     1e-48


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 151 bits (384),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 57/129 (44%), Positives = 76/129 (59%), Gaps = 3/129 (2%)

Query  34   RVQRDLQELT-LGSTMKMNFPNPDDILNFTLTIE-PDEGMYKGGAFHFNFSVNQNFPHDP  91
            R+Q++L+EL           P  D++  + +TI  PD   Y+GG F  +    +++P  P
Sbjct  1    RLQKELKELLKDPPPGISAGPVDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKP  60

Query  92   PKVKCTQKIYHPNIDLEGNVCLNILR-EDWKPVLNLNAVIVGMQVLFLEPNASDPLNKEA  150
            PKVK T KIYHPN+D  G VCL+IL+ E W P L L  V++ +Q L  EPN  DPLN EA
Sbjct  61   PKVKFTTKIYHPNVDSSGEVCLDILKDERWSPALTLEQVLLSIQSLLSEPNPEDPLNAEA  120

Query  151  ADDLRTNRE  159
            A   R NRE
Sbjct  121  AKLYRKNRE  129



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00023147

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431262 pfam10406, TAF8_C, Transcription factor TFIID complex ...  86.8    2e-22


>CDD:431262 pfam10406, TAF8_C, Transcription factor TFIID complex subunit 
8 C-term.  This is the C-terminal, Delta, part of the TAF8 
protein. The N-terminal is generally the histone fold domain, 
Bromo_TP (pfam07524). TAF8 is one of the key subunits of the 
transcription factor for pol II, TFIID. TAF8 is one of the 
several general cofactors which are typically involved in 
gene activation to bring about the communication between gene-specific 
transcription factors and components of the general 
transcription machinery.
Length=49

 Score = 86.8 bits (216),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 35/49 (71%), Gaps = 0/49 (0%)

Query  177  YIPKHFPQFPSKHTYRHTPVFTQREQDPRKIRERATEEGRHGEEALRKL  225
            YIP   P FP  HTY+ TPV+ +R  DP+KIRE+A E+ R  E+ALRKL
Sbjct  1    YIPSWLPPFPPPHTYKRTPVYPERITDPKKIREKAAEQSRLAEKALRKL  49



Lambda      K        H        a         alpha
   0.316    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00023148

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00023149

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  95.7    4e-25
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  70.7    1e-15


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 95.7 bits (239),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 52/90 (58%), Gaps = 1/90 (1%)

Query  88   LNIHGGGFLGGLPEGQTSFCQKVAHETGAIVVSTSHRYAPRYTFPTAHEDVQDVAEWLIE  147
            +  HGGGF+ G  +     C+++A E GA+VVS  +R AP + FP A++D      WL E
Sbjct  2    VYFHGGGFVLGSADTHDRLCRRLAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLAE  61

Query  148  NAERLWGTNPRSMTVSGFSAGGNLALGVAQ  177
             A    G +P  + V+G SAGGNLA  VA 
Sbjct  62   QAA-ELGADPSRIAVAGDSAGGNLAAAVAL  90


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 70.7 bits (174),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 52/127 (41%), Gaps = 20/127 (16%)

Query  89   NIHGGGFLGGLPEGQTSFCQKVAHE---TGAIVVSTSHRYAPRYTFPTAHEDVQDVAEWL  145
             IHGGG+  G  E    F           G  V S ++R +    FP   +DV+    +L
Sbjct  18   WIHGGGWNSGDKEADMGFMTNTVKALLKAGYAVASINYRLSTDAKFPAQIQDVKAAIRFL  77

Query  146  IENAERLWGTNPRSMTVSGFSAGGNLAL--GVAQGLAHTE--------------FSIKAS  189
              NA +  G +   + + GFSAGG+LAL  G++      E              F + A 
Sbjct  78   RANAAKY-GIDTNKIALMGFSAGGHLALLAGLSNNNKEFEGNVGDYTPESSKESFKVNAV  136

Query  190  VTFYAPV  196
            V FY P 
Sbjct  137  VDFYGPT  143



Lambda      K        H        a         alpha
   0.325    0.138    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00023150

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459629 pfam00011, HSP20, Hsp20/alpha crystallin family. Not o...  65.3    5e-15


>CDD:459629 pfam00011, HSP20, Hsp20/alpha crystallin family.  Not only do 
small heat-shock-proteins occur in eukaryotes and prokaryotes 
but they have also now been shown to occur in cyanobacterial 
phages as well as their bacterial hosts.
Length=100

 Score = 65.3 bits (160),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 39/136 (29%), Positives = 59/136 (43%), Gaps = 37/136 (27%)

Query  44   DVRETNDAYLLDGELPGIANKDIEIEFSDNDTLVIKGRSEREYHSGTPEQATQESSDDKQ  103
            D++E  DA+ +  ++PG   ++++++  DN  L++KG  E E                  
Sbjct  1    DIKEDEDAFEVRLDVPGFKPEELKVKVEDN-RLLVKGEHEEE------------------  41

Query  104  KESTEVVKSGDKQVSKSDNKKHRFWVSERSVGEFHRTFQFPTPVDQDNVKASLKNGILSI  163
                   K  D               SERS G F R F  P   D D VKASLK+G+L++
Sbjct  42   -------KEDDH-----------GLRSERSYGSFSRKFTLPENADPDKVKASLKDGVLTV  83

Query  164  VVPKKVVNTGARKITV  179
             VPK       R+I +
Sbjct  84   TVPKLEPEPKERRIQI  99



Lambda      K        H        a         alpha
   0.314    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00027501

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459629 pfam00011, HSP20, Hsp20/alpha crystallin family. Not o...  65.3    5e-15


>CDD:459629 pfam00011, HSP20, Hsp20/alpha crystallin family.  Not only do 
small heat-shock-proteins occur in eukaryotes and prokaryotes 
but they have also now been shown to occur in cyanobacterial 
phages as well as their bacterial hosts.
Length=100

 Score = 65.3 bits (160),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 39/136 (29%), Positives = 59/136 (43%), Gaps = 37/136 (27%)

Query  44   DVRETNDAYLLDGELPGIANKDIEIEFSDNDTLVIKGRSEREYHSGTPEQATQESSDDKQ  103
            D++E  DA+ +  ++PG   ++++++  DN  L++KG  E E                  
Sbjct  1    DIKEDEDAFEVRLDVPGFKPEELKVKVEDN-RLLVKGEHEEE------------------  41

Query  104  KESTEVVKSGDKQVSKSDNKKHRFWVSERSVGEFHRTFQFPTPVDQDNVKASLKNGILSI  163
                   K  D               SERS G F R F  P   D D VKASLK+G+L++
Sbjct  42   -------KEDDH-----------GLRSERSYGSFSRKFTLPENADPDKVKASLKDGVLTV  83

Query  164  VVPKKVVNTGARKITV  179
             VPK       R+I +
Sbjct  84   TVPKLEPEPKERRIQI  99



Lambda      K        H        a         alpha
   0.314    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00023152

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  120     2e-33
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  76.1    8e-17


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 120 bits (304),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 67/233 (29%), Positives = 93/233 (40%), Gaps = 30/233 (13%)

Query  88   LNIHGGGFLGGLPEGQTSFCQKVAHETGAIVVSTSHRYAPRYTFPTAHEDVQDVAEWLIE  147
            +  HGGGF+ G  +     C+++A E GA+VVS  +R AP + FP A++D      WL E
Sbjct  2    VYFHGGGFVLGSADTHDRLCRRLAAEAGAVVVSVDYRLAPEHPFPAAYDDAYAALRWLAE  61

Query  148  NAERLWGTNPRSMTVSGFSAGGNLALGVAQGL-AHTEFSIKASVTFYAPVDLRLPPWEKP  206
             A    G +P  + V+G SAGGNLA  VA              V  Y   DLR       
Sbjct  62   QAA-ELGADPSRIAVAGDSAGGNLAAAVALRARDEGLPKPAGQVLIYPGTDLR-TESPSY  119

Query  207  LPAGFPEKDPL--AFLQPLMDAYAGPGREKNLTNPLLHPILA-DIGCLPRNMMFVVPKMD  263
            L   F +   L  A +      Y       +  +PL  P+ A D+  LP   + VV + D
Sbjct  120  LAREFADGPLLTRAAMDWFWRLYLP---GADRDDPLASPLFASDLSGLPP-ALVVVAEFD  175

Query  264  ILLHEQTTFVERLKEEAAAINRGLADQQDSAESQLQPYRIESRFDEGQIHGWL  316
             L  E   + ERL+                         +E     G  HG+ 
Sbjct  176  PLRDEGEAYAERLRAAGV--------------------PVELIEYPGMPHGFH  208


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 76.1 bits (188),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 54/129 (42%), Gaps = 20/129 (16%)

Query  89   NIHGGGFLGGLPEGQTSFCQKVAHE---TGAIVVSTSHRYAPRYTFPTAHEDVQDVAEWL  145
             IHGGG+  G  E    F           G  V S ++R +    FP   +DV+    +L
Sbjct  18   WIHGGGWNSGDKEADMGFMTNTVKALLKAGYAVASINYRLSTDAKFPAQIQDVKAAIRFL  77

Query  146  IENAERLWGTNPRSMTVSGFSAGGNLAL--GVAQGLAHTE--------------FSIKAS  189
              NA +  G +   + + GFSAGG+LAL  G++      E              F + A 
Sbjct  78   RANAAKY-GIDTNKIALMGFSAGGHLALLAGLSNNNKEFEGNVGDYTPESSKESFKVNAV  136

Query  190  VTFYAPVDL  198
            V FY P DL
Sbjct  137  VDFYGPTDL  145



Lambda      K        H        a         alpha
   0.321    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00023153

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459629 pfam00011, HSP20, Hsp20/alpha crystallin family. Not o...  65.3    5e-15


>CDD:459629 pfam00011, HSP20, Hsp20/alpha crystallin family.  Not only do 
small heat-shock-proteins occur in eukaryotes and prokaryotes 
but they have also now been shown to occur in cyanobacterial 
phages as well as their bacterial hosts.
Length=100

 Score = 65.3 bits (160),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 39/136 (29%), Positives = 59/136 (43%), Gaps = 37/136 (27%)

Query  44   DVRETNDAYLLDGELPGIANKDIEIEFSDNDTLVIKGRSEREYHSGTPEQATQESSDDKQ  103
            D++E  DA+ +  ++PG   ++++++  DN  L++KG  E E                  
Sbjct  1    DIKEDEDAFEVRLDVPGFKPEELKVKVEDN-RLLVKGEHEEE------------------  41

Query  104  KESTEVVKSGDKQVSKSDNKKHRFWVSERSVGEFHRTFQFPTPVDQDNVKASLKNGILSI  163
                   K  D               SERS G F R F  P   D D VKASLK+G+L++
Sbjct  42   -------KEDDH-----------GLRSERSYGSFSRKFTLPENADPDKVKASLKDGVLTV  83

Query  164  VVPKKVVNTGARKITV  179
             VPK       R+I +
Sbjct  84   TVPKLEPEPKERRIQI  99



Lambda      K        H        a         alpha
   0.314    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00023154

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00023156

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00023155

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00023157

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00023158

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00023159

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme...  602     0.0  


>CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme domain. 
 Copper amine oxidases are a ubiquitous and novel group of 
quinoenzymes that catalyze the oxidative deamination of primary 
amines to the corresponding aldehydes, with concomitant 
reduction of molecular oxygen to hydrogen peroxide. The enzymes 
are dimers of identical 70-90 kDa subunits, each of which 
contains a single copper ion and a covalently bound cofactor 
formed by the post-translational modification of a tyrosine 
side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). 
This family corresponds to the catalytic domain of the enzyme.
Length=403

 Score = 602 bits (1555),  Expect = 0.0, Method: Composition-based stats.
 Identities = 212/385 (55%), Positives = 263/385 (68%), Gaps = 7/385 (2%)

Query  247  LNVVQPEGPSFRITNESLVEWQKWSFRVGFNPREGATIHDVWYDGRSVMHRLSISEMTVP  306
             N+VQPEGPSF + + + VEWQ WSFRVGFNPREG  +HDV Y GR +++RLS+SEM VP
Sbjct  1    PNIVQPEGPSFTV-DGNYVEWQGWSFRVGFNPREGLVLHDVRYKGRRILYRLSLSEMVVP  59

Query  307  YADPRPPYHRKQAFDFGDGGGGNMANNLSIGCDCLGVIKYFDAIVTGPDGSAKKLPNAIC  366
            Y DP PP+HRK AFD G+ G G +AN+L +GCDC G I Y DA+    DG    +PNAIC
Sbjct  60   YGDPDPPHHRKAAFDSGEYGFGRLANSLVLGCDCPGNITYLDAVFADSDGEPVTIPNAIC  119

Query  367  LHEQDNGIGWKHSNWRTGRAVVTRNRELVVQFIITLANYEYIFAYKFDQSGGITVESRAT  426
            +HE+D G  WKH+++RTGRA VTRNR LVV+ I T+ NY+YIF + F Q G I VE RAT
Sbjct  120  IHEEDAGPLWKHTDFRTGRAEVTRNRRLVVRSIATVGNYDYIFDWIFYQDGTIEVEVRAT  179

Query  427  GILNVVNIDPG-KVSDYGNVVSGGVLAQNHQHIFCVRMDPAIDGPNNSVVVEESHPVPMN  485
            GIL+   IDPG   S YG  V+ GVL  NHQH F  R+DP IDG  NSVV  +  P P+ 
Sbjct  180  GILSTAAIDPGEDGSPYGTRVAPGVLGSNHQHFFNFRLDPDIDGTKNSVVEVDVVPWPVG  239

Query  486  DVTNPKGNFYKVTQQTL--ERACYLDAAPQLNRTIKMINPHKKNPISGHPVGYKFIP-LA  542
               NP GN +KV +  L  E+    D  P   R  K++NP+KKN  SG PVGYK +P  A
Sbjct  240  PE-NPYGNAFKVERTVLETEKEAARDLDPSNPRYWKIVNPNKKN-KSGKPVGYKLVPGPA  297

Query  543  TQLLLADPNSVQAKRAQFAQHHVWVTKHRDGELYAGGRYTLQSQQEVDGVADAVKRGESV  602
             Q LLADP+S  AKRA FA+HH+WVTK++D ELYA G Y  QS+    G+A  +   ES+
Sbjct  298  HQPLLADPDSSVAKRAAFARHHLWVTKYKDDELYAAGDYNNQSRGPPVGLAKWIADNESI  357

Query  603  VDTDVVVWSTFGITHNPRVEDWPVM  627
             + D+V+W TFG+TH PR ED+PVM
Sbjct  358  ENEDIVLWVTFGLTHIPRPEDFPVM  382



Lambda      K        H        a         alpha
   0.319    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787537860


Query= TCONS_00027502

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme...  639     0.0  


>CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme domain. 
 Copper amine oxidases are a ubiquitous and novel group of 
quinoenzymes that catalyze the oxidative deamination of primary 
amines to the corresponding aldehydes, with concomitant 
reduction of molecular oxygen to hydrogen peroxide. The enzymes 
are dimers of identical 70-90 kDa subunits, each of which 
contains a single copper ion and a covalently bound cofactor 
formed by the post-translational modification of a tyrosine 
side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). 
This family corresponds to the catalytic domain of the enzyme.
Length=403

 Score = 639 bits (1650),  Expect = 0.0, Method: Composition-based stats.
 Identities = 221/406 (54%), Positives = 277/406 (68%), Gaps = 7/406 (2%)

Query  137  LNVVQPEGPSFRITNESLVEWQKWSFRVGFNPREGATIHDVWYDGRSVMHRLSISEMTVP  196
             N+VQPEGPSF + + + VEWQ WSFRVGFNPREG  +HDV Y GR +++RLS+SEM VP
Sbjct  1    PNIVQPEGPSFTV-DGNYVEWQGWSFRVGFNPREGLVLHDVRYKGRRILYRLSLSEMVVP  59

Query  197  YADPRPPYHRKQAFDFGDGGGGNMANNLSIGCDCLGVIKYFDAIVTGPDGSAKKLPNAIC  256
            Y DP PP+HRK AFD G+ G G +AN+L +GCDC G I Y DA+    DG    +PNAIC
Sbjct  60   YGDPDPPHHRKAAFDSGEYGFGRLANSLVLGCDCPGNITYLDAVFADSDGEPVTIPNAIC  119

Query  257  LHEQDNGIGWKHSNWRTGRAVVTRNRELVVQFIITLANYEYIFAYKFDQSGGITVESRAT  316
            +HE+D G  WKH+++RTGRA VTRNR LVV+ I T+ NY+YIF + F Q G I VE RAT
Sbjct  120  IHEEDAGPLWKHTDFRTGRAEVTRNRRLVVRSIATVGNYDYIFDWIFYQDGTIEVEVRAT  179

Query  317  GILNVVNIDPG-KVSDYGNVVSGGVLAQNHQHIFCVRMDPAIDGPNNSVVVEESHPVPMN  375
            GIL+   IDPG   S YG  V+ GVL  NHQH F  R+DP IDG  NSVV  +  P P+ 
Sbjct  180  GILSTAAIDPGEDGSPYGTRVAPGVLGSNHQHFFNFRLDPDIDGTKNSVVEVDVVPWPVG  239

Query  376  DVTNPKGNFYKVTQQTL--ERACYLDAAPQLNRTIKMINPHKKNPISGHPVGYKFIP-LA  432
               NP GN +KV +  L  E+    D  P   R  K++NP+KKN  SG PVGYK +P  A
Sbjct  240  PE-NPYGNAFKVERTVLETEKEAARDLDPSNPRYWKIVNPNKKN-KSGKPVGYKLVPGPA  297

Query  433  TQLLLADPNSVQAKRAQFAQHHVWVTKHRDGELYAGGRYTLQSQQEVDGVADAVKRGESV  492
             Q LLADP+S  AKRA FA+HH+WVTK++D ELYA G Y  QS+    G+A  +   ES+
Sbjct  298  HQPLLADPDSSVAKRAAFARHHLWVTKYKDDELYAAGDYNNQSRGPPVGLAKWIADNESI  357

Query  493  VDTDVVVWSTFGITHNPRVEDWPVMPVEIFQLMIKPADFFTANPSL  538
             + D+V+W TFG+TH PR ED+PVMPVE    +++P +FF  NP+L
Sbjct  358  ENEDIVLWVTFGLTHIPRPEDFPVMPVEHSGFLLRPFNFFDRNPAL  403



Lambda      K        H        a         alpha
   0.319    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00023160

Length=671
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme...  638     0.0  


>CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme domain. 
 Copper amine oxidases are a ubiquitous and novel group of 
quinoenzymes that catalyze the oxidative deamination of primary 
amines to the corresponding aldehydes, with concomitant 
reduction of molecular oxygen to hydrogen peroxide. The enzymes 
are dimers of identical 70-90 kDa subunits, each of which 
contains a single copper ion and a covalently bound cofactor 
formed by the post-translational modification of a tyrosine 
side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). 
This family corresponds to the catalytic domain of the enzyme.
Length=403

 Score = 638 bits (1649),  Expect = 0.0, Method: Composition-based stats.
 Identities = 221/406 (54%), Positives = 277/406 (68%), Gaps = 7/406 (2%)

Query  247  LNVVQPEGPSFRITNESLVEWQKWSFRVGFNPREGATIHDVWYDGRSVMHRLSISEMTVP  306
             N+VQPEGPSF + + + VEWQ WSFRVGFNPREG  +HDV Y GR +++RLS+SEM VP
Sbjct  1    PNIVQPEGPSFTV-DGNYVEWQGWSFRVGFNPREGLVLHDVRYKGRRILYRLSLSEMVVP  59

Query  307  YADPRPPYHRKQAFDFGDGGGGNMANNLSIGCDCLGVIKYFDAIVTGPDGSAKKLPNAIC  366
            Y DP PP+HRK AFD G+ G G +AN+L +GCDC G I Y DA+    DG    +PNAIC
Sbjct  60   YGDPDPPHHRKAAFDSGEYGFGRLANSLVLGCDCPGNITYLDAVFADSDGEPVTIPNAIC  119

Query  367  LHEQDNGIGWKHSNWRTGRAVVTRNRELVVQFIITLANYEYIFAYKFDQSGGITVESRAT  426
            +HE+D G  WKH+++RTGRA VTRNR LVV+ I T+ NY+YIF + F Q G I VE RAT
Sbjct  120  IHEEDAGPLWKHTDFRTGRAEVTRNRRLVVRSIATVGNYDYIFDWIFYQDGTIEVEVRAT  179

Query  427  GILNVVNIDPG-KVSDYGNVVSGGVLAQNHQHIFCVRMDPAIDGPNNSVVVEESHPVPMN  485
            GIL+   IDPG   S YG  V+ GVL  NHQH F  R+DP IDG  NSVV  +  P P+ 
Sbjct  180  GILSTAAIDPGEDGSPYGTRVAPGVLGSNHQHFFNFRLDPDIDGTKNSVVEVDVVPWPVG  239

Query  486  DVTNPKGNFYKVTQQTL--ERACYLDAAPQLNRTIKMINPHKKNPISGHPVGYKFIP-LA  542
               NP GN +KV +  L  E+    D  P   R  K++NP+KKN  SG PVGYK +P  A
Sbjct  240  PE-NPYGNAFKVERTVLETEKEAARDLDPSNPRYWKIVNPNKKN-KSGKPVGYKLVPGPA  297

Query  543  TQLLLADPNSVQAKRAQFAQHHVWVTKHRDGELYAGGRYTLQSQQEVDGVADAVKRGESV  602
             Q LLADP+S  AKRA FA+HH+WVTK++D ELYA G Y  QS+    G+A  +   ES+
Sbjct  298  HQPLLADPDSSVAKRAAFARHHLWVTKYKDDELYAAGDYNNQSRGPPVGLAKWIADNESI  357

Query  603  VDTDVVVWSTFGITHNPRVEDWPVMPVEIFQLMIKPADFFTANPSL  648
             + D+V+W TFG+TH PR ED+PVMPVE    +++P +FF  NP+L
Sbjct  358  ENEDIVLWVTFGLTHIPRPEDFPVMPVEHSGFLLRPFNFFDRNPAL  403



Lambda      K        H        a         alpha
   0.319    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 852428620


Query= TCONS_00027503

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme...  639     0.0  


>CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme domain. 
 Copper amine oxidases are a ubiquitous and novel group of 
quinoenzymes that catalyze the oxidative deamination of primary 
amines to the corresponding aldehydes, with concomitant 
reduction of molecular oxygen to hydrogen peroxide. The enzymes 
are dimers of identical 70-90 kDa subunits, each of which 
contains a single copper ion and a covalently bound cofactor 
formed by the post-translational modification of a tyrosine 
side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). 
This family corresponds to the catalytic domain of the enzyme.
Length=403

 Score = 639 bits (1650),  Expect = 0.0, Method: Composition-based stats.
 Identities = 221/406 (54%), Positives = 277/406 (68%), Gaps = 7/406 (2%)

Query  137  LNVVQPEGPSFRITNESLVEWQKWSFRVGFNPREGATIHDVWYDGRSVMHRLSISEMTVP  196
             N+VQPEGPSF + + + VEWQ WSFRVGFNPREG  +HDV Y GR +++RLS+SEM VP
Sbjct  1    PNIVQPEGPSFTV-DGNYVEWQGWSFRVGFNPREGLVLHDVRYKGRRILYRLSLSEMVVP  59

Query  197  YADPRPPYHRKQAFDFGDGGGGNMANNLSIGCDCLGVIKYFDAIVTGPDGSAKKLPNAIC  256
            Y DP PP+HRK AFD G+ G G +AN+L +GCDC G I Y DA+    DG    +PNAIC
Sbjct  60   YGDPDPPHHRKAAFDSGEYGFGRLANSLVLGCDCPGNITYLDAVFADSDGEPVTIPNAIC  119

Query  257  LHEQDNGIGWKHSNWRTGRAVVTRNRELVVQFIITLANYEYIFAYKFDQSGGITVESRAT  316
            +HE+D G  WKH+++RTGRA VTRNR LVV+ I T+ NY+YIF + F Q G I VE RAT
Sbjct  120  IHEEDAGPLWKHTDFRTGRAEVTRNRRLVVRSIATVGNYDYIFDWIFYQDGTIEVEVRAT  179

Query  317  GILNVVNIDPG-KVSDYGNVVSGGVLAQNHQHIFCVRMDPAIDGPNNSVVVEESHPVPMN  375
            GIL+   IDPG   S YG  V+ GVL  NHQH F  R+DP IDG  NSVV  +  P P+ 
Sbjct  180  GILSTAAIDPGEDGSPYGTRVAPGVLGSNHQHFFNFRLDPDIDGTKNSVVEVDVVPWPVG  239

Query  376  DVTNPKGNFYKVTQQTL--ERACYLDAAPQLNRTIKMINPHKKNPISGHPVGYKFIP-LA  432
               NP GN +KV +  L  E+    D  P   R  K++NP+KKN  SG PVGYK +P  A
Sbjct  240  PE-NPYGNAFKVERTVLETEKEAARDLDPSNPRYWKIVNPNKKN-KSGKPVGYKLVPGPA  297

Query  433  TQLLLADPNSVQAKRAQFAQHHVWVTKHRDGELYAGGRYTLQSQQEVDGVADAVKRGESV  492
             Q LLADP+S  AKRA FA+HH+WVTK++D ELYA G Y  QS+    G+A  +   ES+
Sbjct  298  HQPLLADPDSSVAKRAAFARHHLWVTKYKDDELYAAGDYNNQSRGPPVGLAKWIADNESI  357

Query  493  VDTDVVVWSTFGITHNPRVEDWPVMPVEIFQLMIKPADFFTANPSL  538
             + D+V+W TFG+TH PR ED+PVMPVE    +++P +FF  NP+L
Sbjct  358  ENEDIVLWVTFGLTHIPRPEDFPVMPVEHSGFLLRPFNFFDRNPAL  403



Lambda      K        H        a         alpha
   0.319    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00027504

Length=754
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  76.0    1e-15


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 76.0 bits (187),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query  308  ILTLLSIFHSYRDDEVISWRLIGMAVRGAMQLGLHCQETWQKTGGVFPGELQSEYASRLF  367
             L LL ++     D  + WR  G+A+R A  LGLH ++    +        ++E   RLF
Sbjct  96   ALLLLELYELGTGDRKLHWRYHGLAIRLARSLGLH-RDPSYVSPSWKLWIEEAELRRRLF  154

Query  368  WCIYVLDRKWSFGTGLPFAIQDSDMDTNLPE  398
            W  + LDR  S   G P  + DSD+D  LP 
Sbjct  155  WACFYLDRLISLILGRPPLLSDSDIDLPLPC  185



Lambda      K        H        a         alpha
   0.318    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0861    0.140     1.90     42.6     43.6 

Effective search space used: 960400320


Query= TCONS_00023161

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme...  639     0.0  


>CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme domain. 
 Copper amine oxidases are a ubiquitous and novel group of 
quinoenzymes that catalyze the oxidative deamination of primary 
amines to the corresponding aldehydes, with concomitant 
reduction of molecular oxygen to hydrogen peroxide. The enzymes 
are dimers of identical 70-90 kDa subunits, each of which 
contains a single copper ion and a covalently bound cofactor 
formed by the post-translational modification of a tyrosine 
side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). 
This family corresponds to the catalytic domain of the enzyme.
Length=403

 Score = 639 bits (1650),  Expect = 0.0, Method: Composition-based stats.
 Identities = 221/406 (54%), Positives = 277/406 (68%), Gaps = 7/406 (2%)

Query  137  LNVVQPEGPSFRITNESLVEWQKWSFRVGFNPREGATIHDVWYDGRSVMHRLSISEMTVP  196
             N+VQPEGPSF + + + VEWQ WSFRVGFNPREG  +HDV Y GR +++RLS+SEM VP
Sbjct  1    PNIVQPEGPSFTV-DGNYVEWQGWSFRVGFNPREGLVLHDVRYKGRRILYRLSLSEMVVP  59

Query  197  YADPRPPYHRKQAFDFGDGGGGNMANNLSIGCDCLGVIKYFDAIVTGPDGSAKKLPNAIC  256
            Y DP PP+HRK AFD G+ G G +AN+L +GCDC G I Y DA+    DG    +PNAIC
Sbjct  60   YGDPDPPHHRKAAFDSGEYGFGRLANSLVLGCDCPGNITYLDAVFADSDGEPVTIPNAIC  119

Query  257  LHEQDNGIGWKHSNWRTGRAVVTRNRELVVQFIITLANYEYIFAYKFDQSGGITVESRAT  316
            +HE+D G  WKH+++RTGRA VTRNR LVV+ I T+ NY+YIF + F Q G I VE RAT
Sbjct  120  IHEEDAGPLWKHTDFRTGRAEVTRNRRLVVRSIATVGNYDYIFDWIFYQDGTIEVEVRAT  179

Query  317  GILNVVNIDPG-KVSDYGNVVSGGVLAQNHQHIFCVRMDPAIDGPNNSVVVEESHPVPMN  375
            GIL+   IDPG   S YG  V+ GVL  NHQH F  R+DP IDG  NSVV  +  P P+ 
Sbjct  180  GILSTAAIDPGEDGSPYGTRVAPGVLGSNHQHFFNFRLDPDIDGTKNSVVEVDVVPWPVG  239

Query  376  DVTNPKGNFYKVTQQTL--ERACYLDAAPQLNRTIKMINPHKKNPISGHPVGYKFIP-LA  432
               NP GN +KV +  L  E+    D  P   R  K++NP+KKN  SG PVGYK +P  A
Sbjct  240  PE-NPYGNAFKVERTVLETEKEAARDLDPSNPRYWKIVNPNKKN-KSGKPVGYKLVPGPA  297

Query  433  TQLLLADPNSVQAKRAQFAQHHVWVTKHRDGELYAGGRYTLQSQQEVDGVADAVKRGESV  492
             Q LLADP+S  AKRA FA+HH+WVTK++D ELYA G Y  QS+    G+A  +   ES+
Sbjct  298  HQPLLADPDSSVAKRAAFARHHLWVTKYKDDELYAAGDYNNQSRGPPVGLAKWIADNESI  357

Query  493  VDTDVVVWSTFGITHNPRVEDWPVMPVEIFQLMIKPADFFTANPSL  538
             + D+V+W TFG+TH PR ED+PVMPVE    +++P +FF  NP+L
Sbjct  358  ENEDIVLWVTFGLTHIPRPEDFPVMPVEHSGFLLRPFNFFDRNPAL  403



Lambda      K        H        a         alpha
   0.319    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00027505

Length=754
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  76.0    1e-15


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 76.0 bits (187),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query  308  ILTLLSIFHSYRDDEVISWRLIGMAVRGAMQLGLHCQETWQKTGGVFPGELQSEYASRLF  367
             L LL ++     D  + WR  G+A+R A  LGLH ++    +        ++E   RLF
Sbjct  96   ALLLLELYELGTGDRKLHWRYHGLAIRLARSLGLH-RDPSYVSPSWKLWIEEAELRRRLF  154

Query  368  WCIYVLDRKWSFGTGLPFAIQDSDMDTNLPE  398
            W  + LDR  S   G P  + DSD+D  LP 
Sbjct  155  WACFYLDRLISLILGRPPLLSDSDIDLPLPC  185



Lambda      K        H        a         alpha
   0.318    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 960400320


Query= TCONS_00023163

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00023164

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  91.6    4e-22


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 91.6 bits (228),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 93/226 (41%), Gaps = 36/226 (16%)

Query  64   HDPALIRRESDGKYFRFST---GNKISYASSSSIEGPWTVLGSVLPSGSSIDLPGNDDLW  120
             DP+++R   D  Y   S+      I    S  +   W ++G VL   S +   G++  W
Sbjct  11   PDPSILRVGDD-YYLTTSSFEWFPGIPIFHSKDLVN-WKLVGPVLVRRSQLSGRGSNASW  68

Query  121  APDVSLVNGVYHVYYSVSTFGSQSSAIGLATSSTMDLNSWTDHGSTGIQSSSSKPYNAID  180
            APD+S  +G Y++YY+       +  I +AT+ + D   W+D G              ID
Sbjct  69   APDISYHDGKYYLYYTAV-----AHGIFVATADSPD-GPWSDPGKLK------SGGGGID  116

Query  181  GNLFKDG-GTYYMNFGSFWHD-----IYQAPMNSAATSVASSSYNIAYN---PSGTHAVE  231
             +LF D  G  Y+ +G +        IY   +++    +      + Y      G    E
Sbjct  117  PSLFHDDDGKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVGPVTKLIYPGTRWVGGKVTE  176

Query  232  GAFMYKYGNYYYLFFSAGICCGYDTSRPASGEEYKIKVCRSTSATG  277
            G  +YK   YYYL ++AG           +G  Y + V RS S  G
Sbjct  177  GPHLYKRNGYYYLTYAAG----------GTGGPYAVGVARSRSPLG  212



Lambda      K        H        a         alpha
   0.316    0.130    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00023165

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00027506

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00027507

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  102     2e-25


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 102 bits (255),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 71/300 (24%), Positives = 113/300 (38%), Gaps = 42/300 (14%)

Query  64   HDPALIRRESDGKYFRFST---GNKISYASSSSIEGPWTVLGSVLPSGSSIDLPGNDDLW  120
             DP+++R   D  Y   S+      I    S  +   W ++G VL   S +   G++  W
Sbjct  11   PDPSILRVGDD-YYLTTSSFEWFPGIPIFHSKDLVN-WKLVGPVLVRRSQLSGRGSNASW  68

Query  121  APDVSLVNGVYHVYYSVSTFGSQSSAIGLATSSTMDLNSWTDHGSTGIQSSSSKPYNAID  180
            APD+S  +G Y++YY+       +  I +AT+ + D   W+D G              ID
Sbjct  69   APDISYHDGKYYLYYTAV-----AHGIFVATADSPD-GPWSDPGKLK------SGGGGID  116

Query  181  GNLFKDG-GTYYMNFGSFWHD-----IYQAPMNSAATSVASSSYNIAYN---PSGTHAVE  231
             +LF D  G  Y+ +G +        IY   +++    +      + Y      G    E
Sbjct  117  PSLFHDDDGKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVGPVTKLIYPGTRWVGGKVTE  176

Query  232  GAFMYKYGNYYYLFFSAGICCGYDTSRPASGEEYKIKVCRSTSATGNFVDANGVACTNGG  291
            G  +YK   YYYL ++AG           +G  Y + V RS S  G +    G       
Sbjct  177  GPHLYKRNGYYYLTYAAG----------GTGGPYAVGVARSRSPLGPYEWHPGNPILTSR  226

Query  292  GTVVLESHGNVYGPGGQGVFTDPSLGPILYYHYVDTTIGYADSQKLFGWNKIDFS-SGWP  350
                      +YGPG   +   P     + YH      G     +      +++   GWP
Sbjct  227  S-----PENPIYGPGHASLVETPDGEWWIVYHAGRPGDGGYGLGRETRIQPVEWRADGWP  281



Lambda      K        H        a         alpha
   0.316    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00023166

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00027508

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  102     2e-25


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 102 bits (255),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 71/300 (24%), Positives = 113/300 (38%), Gaps = 42/300 (14%)

Query  64   HDPALIRRESDGKYFRFST---GNKISYASSSSIEGPWTVLGSVLPSGSSIDLPGNDDLW  120
             DP+++R   D  Y   S+      I    S  +   W ++G VL   S +   G++  W
Sbjct  11   PDPSILRVGDD-YYLTTSSFEWFPGIPIFHSKDLVN-WKLVGPVLVRRSQLSGRGSNASW  68

Query  121  APDVSLVNGVYHVYYSVSTFGSQSSAIGLATSSTMDLNSWTDHGSTGIQSSSSKPYNAID  180
            APD+S  +G Y++YY+       +  I +AT+ + D   W+D G              ID
Sbjct  69   APDISYHDGKYYLYYTAV-----AHGIFVATADSPD-GPWSDPGKLK------SGGGGID  116

Query  181  GNLFKDG-GTYYMNFGSFWHD-----IYQAPMNSAATSVASSSYNIAYN---PSGTHAVE  231
             +LF D  G  Y+ +G +        IY   +++    +      + Y      G    E
Sbjct  117  PSLFHDDDGKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVGPVTKLIYPGTRWVGGKVTE  176

Query  232  GAFMYKYGNYYYLFFSAGICCGYDTSRPASGEEYKIKVCRSTSATGNFVDANGVACTNGG  291
            G  +YK   YYYL ++AG           +G  Y + V RS S  G +    G       
Sbjct  177  GPHLYKRNGYYYLTYAAG----------GTGGPYAVGVARSRSPLGPYEWHPGNPILTSR  226

Query  292  GTVVLESHGNVYGPGGQGVFTDPSLGPILYYHYVDTTIGYADSQKLFGWNKIDFS-SGWP  350
                      +YGPG   +   P     + YH      G     +      +++   GWP
Sbjct  227  S-----PENPIYGPGHASLVETPDGEWWIVYHAGRPGDGGYGLGRETRIQPVEWRADGWP  281



Lambda      K        H        a         alpha
   0.316    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00023167

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00023168

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  94.3    5e-23


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 94.3 bits (235),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 64/258 (25%), Positives = 100/258 (39%), Gaps = 41/258 (16%)

Query  64   HDPALIRRESDGKYFRFST---GNKISYASSSSIEGPWTVLGSVLPSGSSIDLPGNDDLW  120
             DP+++R   D  Y   S+      I    S  +   W ++G VL   S +   G++  W
Sbjct  11   PDPSILRVGDD-YYLTTSSFEWFPGIPIFHSKDLVN-WKLVGPVLVRRSQLSGRGSNASW  68

Query  121  APDVSLVNGVYHVYYSVSTFGSQSSAIGLATSSTMDLNSWTDHGSTGIQSSSSKPYNAID  180
            APD+S  +G Y++YY+       +  I +AT+ + D   W+D G              ID
Sbjct  69   APDISYHDGKYYLYYTAV-----AHGIFVATADSPD-GPWSDPGKLK------SGGGGID  116

Query  181  GNLFKDG-GTYYMNFGSFWHD-----IYQAPMNSAATSVASSSYNIAYN---PSGTHAVE  231
             +LF D  G  Y+ +G +        IY   +++    +      + Y      G    E
Sbjct  117  PSLFHDDDGKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVGPVTKLIYPGTRWVGGKVTE  176

Query  232  GAFMYKYGNYYYLFFSAGICCGYDTSRPASGEEYKIKVCRSTSATGNFVDANGVACTNGG  291
            G  +YK   YYYL ++AG           +G  Y + V RS S  G +    G       
Sbjct  177  GPHLYKRNGYYYLTYAAG----------GTGGPYAVGVARSRSPLGPYEWHPGNPILTSR  226

Query  292  GTVVLESHGNVYGPGGQG  309
                      +YGPG   
Sbjct  227  S-----PENPIYGPGHAS  239



Lambda      K        H        a         alpha
   0.316    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00023169

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  91.6    4e-22


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 91.6 bits (228),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 93/226 (41%), Gaps = 36/226 (16%)

Query  64   HDPALIRRESDGKYFRFST---GNKISYASSSSIEGPWTVLGSVLPSGSSIDLPGNDDLW  120
             DP+++R   D  Y   S+      I    S  +   W ++G VL   S +   G++  W
Sbjct  11   PDPSILRVGDD-YYLTTSSFEWFPGIPIFHSKDLVN-WKLVGPVLVRRSQLSGRGSNASW  68

Query  121  APDVSLVNGVYHVYYSVSTFGSQSSAIGLATSSTMDLNSWTDHGSTGIQSSSSKPYNAID  180
            APD+S  +G Y++YY+       +  I +AT+ + D   W+D G              ID
Sbjct  69   APDISYHDGKYYLYYTAV-----AHGIFVATADSPD-GPWSDPGKLK------SGGGGID  116

Query  181  GNLFKDG-GTYYMNFGSFWHD-----IYQAPMNSAATSVASSSYNIAYN---PSGTHAVE  231
             +LF D  G  Y+ +G +        IY   +++    +      + Y      G    E
Sbjct  117  PSLFHDDDGKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVGPVTKLIYPGTRWVGGKVTE  176

Query  232  GAFMYKYGNYYYLFFSAGICCGYDTSRPASGEEYKIKVCRSTSATG  277
            G  +YK   YYYL ++AG           +G  Y + V RS S  G
Sbjct  177  GPHLYKRNGYYYLTYAAG----------GTGGPYAVGVARSRSPLG  212



Lambda      K        H        a         alpha
   0.316    0.130    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00023170

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  93.5    1e-22


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 93.5 bits (233),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 100/255 (39%), Gaps = 41/255 (16%)

Query  64   HDPALIRRESDGKYFRFST---GNKISYASSSSIEGPWTVLGSVLPSGSSIDLPGNDDLW  120
             DP+++R   D  Y   S+      I    S  +   W ++G VL   S +   G++  W
Sbjct  11   PDPSILRVGDD-YYLTTSSFEWFPGIPIFHSKDLVN-WKLVGPVLVRRSQLSGRGSNASW  68

Query  121  APDVSLVNGVYHVYYSVSTFGSQSSAIGLATSSTMDLNSWTDHGSTGIQSSSSKPYNAID  180
            APD+S  +G Y++YY+       +  I +AT+ + D   W+D G              ID
Sbjct  69   APDISYHDGKYYLYYTAV-----AHGIFVATADSPD-GPWSDPGKLK------SGGGGID  116

Query  181  GNLFKDG-GTYYMNFGSFWHD-----IYQAPMNSAATSVASSSYNIAYN---PSGTHAVE  231
             +LF D  G  Y+ +G +        IY   +++    +      + Y      G    E
Sbjct  117  PSLFHDDDGKKYLVWGGWDPRHGHGGIYLQELDNDGLKLVGPVTKLIYPGTRWVGGKVTE  176

Query  232  GAFMYKYGNYYYLFFSAGICCGYDTSRPASGEEYKIKVCRSTSATGNFVDANGVACTNGG  291
            G  +YK   YYYL ++AG           +G  Y + V RS S  G +    G       
Sbjct  177  GPHLYKRNGYYYLTYAAG----------GTGGPYAVGVARSRSPLGPYEWHPGNPILTSR  226

Query  292  GTVVLESHGNVYGPG  306
                      +YGPG
Sbjct  227  S-----PENPIYGPG  236



Lambda      K        H        a         alpha
   0.316    0.131    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 372672612


Query= TCONS_00027509

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family ...  64.3    4e-13


>CDD:398349 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43.  The 
glycosyl hydrolase family 43 contains members that are arabinanases. 
Arabinanases hydrolyze the alpha-1,5-linked L-arabinofuranoside 
backbone of plant cell wall arabinans. The structure 
of arabinanase Arb43A from Cellvibrio japonicus reveals 
a five-bladed beta-propeller fold. A long V-shaped groove, 
partially enclosed at one end, forms a single extended substrate-binding 
surface across the face of the propeller.
Length=281

 Score = 64.3 bits (157),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 41/182 (23%), Positives = 60/182 (33%), Gaps = 30/182 (16%)

Query  5    SWTDHGSTGIQSSSSKPYNAIDGNLFKDG-GTYYMNFGSFWHD-----IYQAPMNSAATS  58
             W+D G              ID +LF D  G  Y+ +G +        IY   +++    
Sbjct  101  PWSDPGKLK------SGGGGIDPSLFHDDDGKKYLVWGGWDPRHGHGGIYLQELDNDGLK  154

Query  59   VASSSYNIAYN---PSGTHAVEGAFMYKYGNYYYLFFSAGICCGYDTSRPASGEEYKIKV  115
            +      + Y      G    EG  +YK   YYYL ++AG           +G  Y + V
Sbjct  155  LVGPVTKLIYPGTRWVGGKVTEGPHLYKRNGYYYLTYAAG----------GTGGPYAVGV  204

Query  116  CRSTSATGNFVDANGVACTNGGGTVVLESHGNVYGPGGQGVFTDPSLGPILYYHYVDTTI  175
             RS S  G +    G                 +YGPG   +   P     + YH      
Sbjct  205  ARSRSPLGPYEWHPGNPILTSRS-----PENPIYGPGHASLVETPDGEWWIVYHAGRPGD  259

Query  176  GY  177
            G 
Sbjct  260  GG  261



Lambda      K        H        a         alpha
   0.316    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00023174

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  201     2e-62


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 201 bits (514),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 137/329 (42%), Positives = 190/329 (58%), Gaps = 18/329 (5%)

Query  26   HFSPSWFSTTMGTGIVAILFHLIPFGHTYLHYVSIVFFIFNVVLFAVVLSMSILRYTLYP  85
            HF+P+WF+  MGTG +A+L H +P+G   L  + ++ FI N+VLF ++L + +LR+ LYP
Sbjct  1    HFTPAWFAIVMGTGGLALLLHHLPYGR-GLRTIGLILFILNLVLFLLLLLLYLLRFILYP  59

Query  86   EIWAVMIQDPTNSLFLATCPMGFATLIEMWVFVCVPAWGDWARTVAWVLW-IVDAVAAAS  144
            E     ++ P  SLFL T PMGFAT+I   V V VP  G W  T+AWVLW  +    A +
Sbjct  60   EAVRAELRHPVESLFLGTFPMGFATIINGLVLVPVP--GPWLVTLAWVLWWWIGVALALA  117

Query  145  VTVSLSFILISQSYITSLERITALQLLPIAATIVAAGAGAEVAEILPNPQHAMGTVLVSY  204
              V + F+L ++     LE +T   LLP+   +V A  GA +A         +  ++VSY
Sbjct  118  FAVGVPFLLFTRH--HLLEAMTPAWLLPVVPLMVVAALGALLA------ALLLPILVVSY  169

Query  205  ILWGMGTPLAMTILVIYYQRLAVHKLPSRETIVSCFLPLGPLGFGGFGILYLGKVLRKVV  264
            +LWG+G  LA+ IL IY  RL  H LP  E   S F+PLGP G G   +L LG     ++
Sbjct  170  LLWGLGLFLALVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTIL  229

Query  265  ESHEAIDPIAGSIAYTMGLFISLLMWSFGLIWLVFALATIYHA---SPFPFNMGWWGFTF  321
                A+  +AG I Y + L ++L +W FGL W   A  ++  A      PFN+GWW FTF
Sbjct  230  P---ALTALAGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTF  286

Query  322  PLGVYAANTLLLGQQLDLMFFRIFGMILS  350
            PLG +A  T+ LG+ LD  FFR+ G ILS
Sbjct  287  PLGAFALATIELGKALDSPFFRVLGTILS  315



Lambda      K        H        a         alpha
   0.330    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00023173

Length=535


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00023172

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  201     2e-62


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 201 bits (514),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 137/329 (42%), Positives = 190/329 (58%), Gaps = 18/329 (5%)

Query  26   HFSPSWFSTTMGTGIVAILFHLIPFGHTYLHYVSIVFFIFNVVLFAVVLSMSILRYTLYP  85
            HF+P+WF+  MGTG +A+L H +P+G   L  + ++ FI N+VLF ++L + +LR+ LYP
Sbjct  1    HFTPAWFAIVMGTGGLALLLHHLPYGR-GLRTIGLILFILNLVLFLLLLLLYLLRFILYP  59

Query  86   EIWAVMIQDPTNSLFLATCPMGFATLIEMWVFVCVPAWGDWARTVAWVLW-IVDAVAAAS  144
            E     ++ P  SLFL T PMGFAT+I   V V VP  G W  T+AWVLW  +    A +
Sbjct  60   EAVRAELRHPVESLFLGTFPMGFATIINGLVLVPVP--GPWLVTLAWVLWWWIGVALALA  117

Query  145  VTVSLSFILISQSYITSLERITALQLLPIAATIVAAGAGAEVAEILPNPQHAMGTVLVSY  204
              V + F+L ++     LE +T   LLP+   +V A  GA +A         +  ++VSY
Sbjct  118  FAVGVPFLLFTRH--HLLEAMTPAWLLPVVPLMVVAALGALLA------ALLLPILVVSY  169

Query  205  ILWGMGTPLAMTILVIYYQRLAVHKLPSRETIVSCFLPLGPLGFGGFGILYLGKVLRKVV  264
            +LWG+G  LA+ IL IY  RL  H LP  E   S F+PLGP G G   +L LG     ++
Sbjct  170  LLWGLGLFLALVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTIL  229

Query  265  ESHEAIDPIAGSIAYTMGLFISLLMWSFGLIWLVFALATIYHA---SPFPFNMGWWGFTF  321
                A+  +AG I Y + L ++L +W FGL W   A  ++  A      PFN+GWW FTF
Sbjct  230  P---ALTALAGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTF  286

Query  322  PLGVYAANTLLLGQQLDLMFFRIFGMILS  350
            PLG +A  T+ LG+ LD  FFR+ G ILS
Sbjct  287  PLGAFALATIELGKALDSPFFRVLGTILS  315



Lambda      K        H        a         alpha
   0.330    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00023175

Length=367


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00027511

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  105     6e-28


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 105 bits (263),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 69/157 (44%), Positives = 92/157 (59%), Gaps = 6/157 (4%)

Query  1    MGTVLVSYILWGMGTPLAMTILVIYYQRLAVHKLPSRETIVSCFLPLGPLGFGGFGILYL  60
            +  ++VSY+LWG+G  LA+ IL IY  RL  H LP  E   S F+PLGP G G   +L L
Sbjct  162  LPILVVSYLLWGLGLFLALVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLL  221

Query  61   GKVLRKVVESHEAIDPIAGSIAYTMGLFISLLMWSFGLIWLVFALATIYHA---SPFPFN  117
            G     ++    A+  +AG I Y + L ++L +W FGL W   A  ++  A      PFN
Sbjct  222  GGAAPTILP---ALTALAGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFN  278

Query  118  MGWWGFTFPLGVYAANTLLLGQQLDLMFFRIFGMILS  154
            +GWW FTFPLG +A  T+ LG+ LD  FFR+ G ILS
Sbjct  279  LGWWAFTFPLGAFALATIELGKALDSPFFRVLGTILS  315



Lambda      K        H        a         alpha
   0.330    0.145    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00023177

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  105     6e-28


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 105 bits (263),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 69/157 (44%), Positives = 92/157 (59%), Gaps = 6/157 (4%)

Query  1    MGTVLVSYILWGMGTPLAMTILVIYYQRLAVHKLPSRETIVSCFLPLGPLGFGGFGILYL  60
            +  ++VSY+LWG+G  LA+ IL IY  RL  H LP  E   S F+PLGP G G   +L L
Sbjct  162  LPILVVSYLLWGLGLFLALVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLL  221

Query  61   GKVLRKVVESHEAIDPIAGSIAYTMGLFISLLMWSFGLIWLVFALATIYHA---SPFPFN  117
            G     ++    A+  +AG I Y + L ++L +W FGL W   A  ++  A      PFN
Sbjct  222  GGAAPTILP---ALTALAGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFN  278

Query  118  MGWWGFTFPLGVYAANTLLLGQQLDLMFFRIFGMILS  154
            +GWW FTFPLG +A  T+ LG+ LD  FFR+ G ILS
Sbjct  279  LGWWAFTFPLGAFALATIELGKALDSPFFRVLGTILS  315



Lambda      K        H        a         alpha
   0.330    0.145    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00023176

Length=310


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 355153814


Query= TCONS_00023178

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  105     6e-28


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 105 bits (263),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 69/157 (44%), Positives = 92/157 (59%), Gaps = 6/157 (4%)

Query  1    MGTVLVSYILWGMGTPLAMTILVIYYQRLAVHKLPSRETIVSCFLPLGPLGFGGFGILYL  60
            +  ++VSY+LWG+G  LA+ IL IY  RL  H LP  E   S F+PLGP G G   +L L
Sbjct  162  LPILVVSYLLWGLGLFLALVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLL  221

Query  61   GKVLRKVVESHEAIDPIAGSIAYTMGLFISLLMWSFGLIWLVFALATIYHA---SPFPFN  117
            G     ++    A+  +AG I Y + L ++L +W FGL W   A  ++  A      PFN
Sbjct  222  GGAAPTILP---ALTALAGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFN  278

Query  118  MGWWGFTFPLGVYAANTLLLGQQLDLMFFRIFGMILS  154
            +GWW FTFPLG +A  T+ LG+ LD  FFR+ G ILS
Sbjct  279  LGWWAFTFPLGAFALATIELGKALDSPFFRVLGTILS  315



Lambda      K        H        a         alpha
   0.330    0.145    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00027512

Length=501


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 620767060


Query= TCONS_00023179

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  176     4e-53


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 176 bits (449),  Expect = 4e-53, Method: Composition-based stats.
 Identities = 131/321 (41%), Positives = 177/321 (55%), Gaps = 19/321 (6%)

Query  1    MGTGIVAILFHLIPFGHTYLHYVSIVFFIFNVVLFAVVLSMSILRYTLYPEIWAVMIQDP  60
            MGTG +A+L H +P+G   L  + ++ FI N+VLF ++L + +LR+ LYPE     ++ P
Sbjct  11   MGTGGLALLLHHLPYGR-GLRTIGLILFILNLVLFLLLLLLYLLRFILYPEAVRAELRHP  69

Query  61   TNSLFLATCPMGFATLIEMWVFVCVPAWGDWARTVAWVLWIVDAVAAAHWSFAWQKADED  120
              SLFL T PMGFAT+I   V V VP  G W  T+AWVLW    VA A            
Sbjct  70   VESLFLGTFPMGFATIINGLVLVPVP--GPWLVTLAWVLWWWIGVALALAFAVGVP----  123

Query  121  RISQSYITSLERITALQLLPIAATIVAAGAGAEVAEILPNPQHAMGTVLVSYILWGMGTP  180
             +  +    LE +T   LLP+   +V A  GA +A         +  ++VSY+LWG+G  
Sbjct  124  FLLFTRHHLLEAMTPAWLLPVVPLMVVAALGALLA------ALLLPILVVSYLLWGLGLF  177

Query  181  LAMTILVIYYQRLAVHKLPSRETIVSCFLPLGPLGFGGFGILYLGKVLRKVVESHEAIDP  240
            LA+ IL IY  RL  H LP  E   S F+PLGP G G   +L LG     ++    A+  
Sbjct  178  LALVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILP---ALTA  234

Query  241  IAGSIAYTMGLFISLLMWSFGLIWLVFALATIYHA---SPFPFNMGWWGFTFPLGVYAAN  297
            +AG I Y + L ++L +W FGL W   A  ++  A      PFN+GWW FTFPLG +A  
Sbjct  235  LAGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTFPLGAFALA  294

Query  298  TLLLGQQLDLMFFRIFGMILS  318
            T+ LG+ LD  FFR+ G ILS
Sbjct  295  TIELGKALDSPFFRVLGTILS  315



Lambda      K        H        a         alpha
   0.330    0.142    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00023180

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  141     2e-40


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 141 bits (357),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 109/264 (41%), Positives = 146/264 (55%), Gaps = 17/264 (6%)

Query  1    MIQDPTNSLFLATCPMGFATLIEMWVFVCVPAWGDWARTVAWVLW-IVDAVAAASVTVSL  59
             ++ P  SLFL T PMGFAT+I   V V VP  G W  T+AWVLW  +    A +  V +
Sbjct  65   ELRHPVESLFLGTFPMGFATIINGLVLVPVP--GPWLVTLAWVLWWWIGVALALAFAVGV  122

Query  60   SFILISQSYITSLERITALQLLPIAATIVAAGAGAEVAEILPNPQHAMGTVLVSYILWGM  119
             F+L ++     LE +T   LLP+   +V A  GA +A         +  ++VSY+LWG+
Sbjct  123  PFLLFTRH--HLLEAMTPAWLLPVVPLMVVAALGALLA------ALLLPILVVSYLLWGL  174

Query  120  GTPLAMTILVIYYQRLAVHKLPSRETIVSCFLPLGPLGFGGFGILYLGKVLRKVVESHEA  179
            G  LA+ IL IY  RL  H LP  E   S F+PLGP G G   +L LG     ++    A
Sbjct  175  GLFLALVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILP---A  231

Query  180  IDPIAGSIAYTMGLFISLLMWSFGLIWLVFALATIYHA---SPFPFNMGWWGFTFPLGVY  236
            +  +AG I Y + L ++L +W FGL W   A  ++  A      PFN+GWW FTFPLG +
Sbjct  232  LTALAGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTFPLGAF  291

Query  237  AANTLLLGQQLDLMFFRIFGMILS  260
            A  T+ LG+ LD  FFR+ G ILS
Sbjct  292  ALATIELGKALDSPFFRVLGTILS  315



Lambda      K        H        a         alpha
   0.329    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00027513

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  105     6e-28


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 105 bits (263),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 69/157 (44%), Positives = 92/157 (59%), Gaps = 6/157 (4%)

Query  1    MGTVLVSYILWGMGTPLAMTILVIYYQRLAVHKLPSRETIVSCFLPLGPLGFGGFGILYL  60
            +  ++VSY+LWG+G  LA+ IL IY  RL  H LP  E   S F+PLGP G G   +L L
Sbjct  162  LPILVVSYLLWGLGLFLALVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLL  221

Query  61   GKVLRKVVESHEAIDPIAGSIAYTMGLFISLLMWSFGLIWLVFALATIYHA---SPFPFN  117
            G     ++    A+  +AG I Y + L ++L +W FGL W   A  ++  A      PFN
Sbjct  222  GGAAPTILP---ALTALAGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFN  278

Query  118  MGWWGFTFPLGVYAANTLLLGQQLDLMFFRIFGMILS  154
            +GWW FTFPLG +A  T+ LG+ LD  FFR+ G ILS
Sbjct  279  LGWWAFTFPLGAFALATIELGKALDSPFFRVLGTILS  315



Lambda      K        H        a         alpha
   0.330    0.145    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00027514

Length=501


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 620767060


Query= TCONS_00023181

Length=661


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 837680720


Query= TCONS_00027515

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00023182

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00027516

Length=334


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0775    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00027517

Length=416


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 507942834


Query= TCONS_00027518

Length=368


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00023183

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00023184

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            67.1    1e-12


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 67.1 bits (164),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 52/280 (19%), Positives = 97/280 (35%), Gaps = 38/280 (14%)

Query  113  ILPGVCGGAFLPGG-----DHVDLSHR---IAWFYAGSSLANAFGGLIGAGVLGNLDGAH  164
            +L G+  GA  P       D      R   +    AG  L  A G L+G  +        
Sbjct  93   VLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLF----  148

Query  165  GIAGWRWLFIIEGSITVGISLFSAISLPNYPATTSWLDETEQAYAQWRLINDAGEADDTN  224
               GWR  F+I   +++  ++   +  P  P  +      E+A                 
Sbjct  149  ---GWRAAFLILAILSLLAAVLLLLPRP--PPESKRPKPAEEARL---------------  188

Query  225  AVRIKDALVMVFRDRRIYLFILLQHCSLLSQTFQYFFPTIVKTLGYGSIETLLITAPVWV  284
               +  A   + RD  ++L + L            + P   + LG  ++   L+     +
Sbjct  189  --SLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGL  246

Query  285  ATFLVSLLVTWTSGRTNDRS--WHIVGLMSVSAVGCIICTATTNIGARFFAMFLMPMGAV  342
               +  LL+   S R   R      + L+ ++A+G ++ + T +      A+ L+  G  
Sbjct  247  LGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFG  306

Query  343  SAYQIIIAWVANSFPRPLVKRSAAIATANMIGNTATIYGS  382
              +  + A V++  P+   +R  A    N  G+     G 
Sbjct  307  LVFPALNALVSDLAPKE--ERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.321    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00023185

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366778 pfam01735, PLA2_B, Lysophospholipase catalytic domain....  660     0.0  


>CDD:366778 pfam01735, PLA2_B, Lysophospholipase catalytic domain.  This 
family consists of Lysophospholipase / phospholipase B EC:3.1.1.5 
and cytosolic phospholipase A2 EC:3.1.4 which also has 
a C2 domain pfam00168. Phospholipase B enzymes catalyze the 
release of fatty acids from lysophsopholipids and are capable 
in vitro of hydrolysing all phospholipids extractable form 
yeast cells. Cytosolic phospholipase A2 associates with natural 
membranes in response to physiological increases in Ca2+ 
and selectively hydrolyzes arachidonyl phospholipids, the 
aligned region corresponds the the carboxy-terminal Ca2+-independent 
catalytic domain of the protein as discussed in.
Length=490

 Score = 660 bits (1705),  Expect = 0.0, Method: Composition-based stats.
 Identities = 258/499 (52%), Positives = 325/499 (65%), Gaps = 23/499 (5%)

Query  102  IAIAVSGGGYRALTNGAGAIKAFDSRTQGSTQSGHLGGLLQSATYVSGLSGGGWLVGSVY  161
            I IA SGGGYRA+  GAG + A D+RT   T    LGGLLQSATY++GLSGG WLVGS+ 
Sbjct  1    IGIAGSGGGYRAMLGGAGVLAALDNRTDNET---GLGGLLQSATYLAGLSGGSWLVGSLA  57

Query  162  LNNFTTIADLQSG-DHGNVWQFSTSILEGPKAKHLQFLSTADYWKDLLKAVDGKSDAGFN  220
            +NNFT++ D     +  ++W  + SI        L        + D++ AV  K +AGFN
Sbjct  58   VNNFTSVQDFPDKPEDISIWDLNHSIFNPGG---LNIPQNIKRYDDIVDAVWKKKNAGFN  114

Query  221  TSLTDYWGRALSYQFINDRTGNGGLSYTWSSIALTDPFRRGEMPLPILVADGRNPGELLI  280
             SLTD WGRALSY  I   +  GG +YTWSS+   + F+  EMP PI+VADGR PG  +I
Sbjct  115  VSLTDIWGRALSYTLIP--SLRGGPNYTWSSLRDAEWFQNAEMPFPIIVADGRKPGTTVI  172

Query  281  GSNSTVYEFNPWEFGSFDPSIFGFAPLEYLGSRFDNGQLPRGEPCVRGFDNAGFVMGTSS  340
              N+TV+EF+P+EFGS+DP++  F P EYLG++F NG   +   CV GFDNAGFVMGTSS
Sbjct  173  NLNATVFEFSPYEFGSWDPTLNSFTPTEYLGTKFFNGTPVKKGKCVPGFDNAGFVMGTSS  232

Query  341  SLFNQFILRLNKTD-LPDLAKDVFSKILTAIGRDGDDIAVYGPNPFYG----YRNSTAAY  395
            +LFNQF+L +N T  LP     +   IL  +  D DDI+ Y PNPF       +N+T + 
Sbjct  233  TLFNQFLLVINSTSSLPSFLNIIIKHILKDLSEDSDDISQYPPNPFQDANDINQNATNSI  292

Query  396  SRSRELDVVDGGEDGQNIPLHPLIQPVRHVDVIFAVDSSADGPYSWPNGSALVATYERSL  455
              S  L +VDGGEDGQNIPL PL+QP R VDVIFAVD+SAD    WP+G +LV TYER  
Sbjct  293  VDSDTLFLVDGGEDGQNIPLWPLLQPERDVDVIFAVDNSADTDNDWPDGVSLVDTYERQF  352

Query  456  NSSGIGNGTVFPAVPDVNTFVNLGLNTRPTFFGCDPANLSAPA--------PLVVYLPNA  507
                   G  FP VPD NTFVNLGLNTRPTFFGCD  NL+  +        PLVVYLPN 
Sbjct  353  -EPLQVKGKKFPYVPDGNTFVNLGLNTRPTFFGCDARNLTDLSARVSDSTPPLVVYLPNE  411

Query  508  PYSTHSNTSTFQLAYSDSERDEIITNGYNVVTRGNATVDKSWPSCVGCAILQRSMYRTNT  567
            P+S  SN STF+++Y+DSER  +I NG+   T+ N T D ++  CV CAI++R + R N 
Sbjct  412  PWSYMSNLSTFKISYNDSERQGLIENGFEAATQDNETDDPTFAHCVACAIIRRKLERLNI  471

Query  568  SMPAVCNSCFKEYCWNGTV  586
            ++P+ C  CF+ YCWNGTV
Sbjct  472  TLPSECEQCFENYCWNGTV  490



Lambda      K        H        a         alpha
   0.317    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00027519

Length=2283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  240     3e-73
CDD:434191 pfam14765, PS-DH, Polyketide synthase dehydratase. Thi...  236     4e-70
CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          190     7e-54
CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  139     7e-39
CDD:465059 pfam16197, KAsynt_C_assoc, Ketoacyl-synthetase C-termi...  124     1e-33
CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  107     6e-26
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          61.9    1e-11
CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        62.0    1e-11


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 240 bits (614),  Expect = 3e-73, Method: Composition-based stats.
 Identities = 74/182 (41%), Positives = 111/182 (61%), Gaps = 5/182 (3%)

Query  1889  ASYLMVGGLGGIGRAVSTWMVDHGARELVYLSRSAGRTPKDDDFVTELQSMGCAVRLVSG  1948
              +YL+ GGLGG+GR ++ W+ + GAR LV LSRSA   P     + EL++ G  V +V+ 
Sbjct  1     GTYLITGGLGGLGRELARWLAERGARHLVLLSRSAAPRPDAQALIAELEARGVEVVVVAC  60

Query  1949  DTTKLADVQRAIAAA---TYPLKGIVQMSMVVANENFTRMSFAEWTASTAPKVQGTWNLH  2005
             D +    V   +A       P++G++  + V+ +     M+  +W    APKV GTWNLH
Sbjct  61    DVSDPDAVAALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLH  120

Query  2006  DASVAAGINLDFFVMFSSVSGIVGQAGQANYASGNSFLDAFAQYRNGLGLPASVVDMGAV  2065
             +A+      LDFFV+FSS++G++G  GQANYA+ N+FLDA A+YR   GLPA+ ++ G  
Sbjct  121   EAT--PDEPLDFFVLFSSIAGLLGSPGQANYAAANAFLDALAEYRRSQGLPATSINWGPW  178

Query  2066  ED  2067
              +
Sbjct  179   AE  180


>CDD:434191 pfam14765, PS-DH, Polyketide synthase dehydratase.  This is the 
dehydratase domain of polyketide synthases. Structural analysis 
shows these DH domains are double hotdogs in which the 
active site contains a histidine from the N-terminal hotdog 
and an aspartate from the C-terminal hotdog. Studies have 
uncovered that a substrate tunnel formed between the DH domains 
may be essential for loading substrates and unloading products.
Length=296

 Score = 236 bits (604),  Expect = 4e-70, Method: Composition-based stats.
 Identities = 93/289 (32%), Positives = 137/289 (47%), Gaps = 18/289 (6%)

Query  719  HDLLGARVAESSDGEPAWRNMFHVTNTPWMRDHKVGEHIVFPFCGYIALAGEAIRQLTNV  778
            H LLG+RV   SD EP WRN   + + PW+RDH+VG  +V P  GY+ +A EA RQL   
Sbjct  1    HPLLGSRVPSPSDLEPVWRNRLRLADLPWLRDHRVGGTVVLPGAGYLEMALEAARQLFGG  60

Query  779  EEGFSVRNIIVSTALVLSEGKPTEMMATFRPHRLTNFLNSAWWEFTVSAYNGR--NWTKH  836
                ++R++ +  ALVL E  P E+  +  P         +WWEF + +  G    WT H
Sbjct  61   SGAVALRDVSILKALVLPEDDPVEVQTSLTPEED---GADSWWEFEIFSRAGGGWEWTLH  117

Query  837  CTGEVCAQSSAPEQTQDPAGLP---------RTLNVRKWYEKMGKGGLNLGGSFQTLETM  887
             TG V      P    D   LP         R+++  ++YE++   GL  G +FQ L  +
Sbjct  118  ATGTVRLAPGEPAAPVDLESLPARCAQPADPRSVSSAEFYERLAARGLFYGPAFQGLRRI  177

Query  888  TTSTSEQRAVGKVVNGRQGDEANYHIHPTVLDATLQILGAAAVKGYARKTKTWLPTSIDK  947
                 E  A  ++     G E+ Y +HP +LDA LQ+LGAA         + +LP  I++
Sbjct  178  WRGDGEALAEARLPEAAAGGESPYLLHPALLDAALQLLGAALPAEAEHADQAYLPVGIER  237

Query  948  FTVHRC-ASDMVTSVSAQLSS--NFSVVGDGRCT-SGGTTVVDAVGIRM  992
              ++R         V A+L      ++VGD       G  V    G+R+
Sbjct  238  LRIYRSLPPGEPLWVHARLERRGGRTIVGDLTLVDEDGRVVARIEGLRL  286


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 190 bits (484),  Expect = 7e-54, Method: Composition-based stats.
 Identities = 113/332 (34%), Positives = 158/332 (48%), Gaps = 17/332 (5%)

Query  348  VMVFTGQGAQWPQMGRDLLRSNDVFRSSIRLLDQHLQTIAGEKPQYSIE-EELKKPAKKS  406
            V VF+GQG+QW  MG  LL+++  F + I   D+        KPQY     ++ +   + 
Sbjct  1    VFVFSGQGSQWAGMGMQLLKTSPAFAAVIDRADEAF------KPQYGFSVSDVLRNNPEG  54

Query  407  RLSLAEFSQPLCTAVQIALVDTLASAGIHPDAVVGHSSGEIAAAYAAGALSAGEAITAAH  466
             L   +F QP   A+QIAL   L S G+ PDAVVGHS GE AAA  AGALS  EA+ AA 
Sbjct  55   TLDGTQFVQPALFAMQIALAALLQSYGVRPDAVVGHSLGEYAAAVVAGALSPEEALLAAV  114

Query  467  HRGAVTSRQKRVGTMAAIGMSWAETEKYLVPNVTIACDNSPRSVTISGDVDAVKSVVAAI  526
             R  +  +    G MAA+ +S  E E+    +V  A  NSPRSV ISG  +AV+ +V  +
Sbjct  115  LRSRLMMQLAGPGGMAAVELSAEEVEQRWPDDVVGAVVNSPRSVVISGPQEAVRELVERV  174

Query  527  KEAQPQMLARLLQVDKAYHSYHMKEIGEDYQSLINEEVVGREPSALFFSSVTGQVLGPDH  586
               +  + A +  V+ A HS  M  I     S +  ++  R P   F SS +        
Sbjct  175  S--KEGVGALVENVNYAVHSPQMDAIAPALLSAL-ADIAPRTPRVPFISSTSIDPSDQRT  231

Query  587  STWSKYWQENLESPVRFREAVTAILKHDVGKNAVFLEVGPHGALAGPLRQIFTQATSSAP  646
             + ++YW  NL SPVRF EA+ +  +       VF+E+ PH  L   L      A+    
Sbjct  232  LS-AEYWVRNLRSPVRFAEAILSAAE---PGPLVFIEISPHPLLLAALIDTLKSASDGKV  287

Query  647  YVSV--MARNQDCNAS-FLAAIGALHSLNVDV  675
               V  + R+Q      FL  +   H      
Sbjct  288  ATLVGTLIRDQTDFLVTFLYILAVAHLTGSAP  319


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 139 bits (353),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 53/118 (45%), Positives = 71/118 (60%), Gaps = 5/118 (4%)

Query  94   AVVRATSHNADGKTPTLSQPSTDAQEALMRRAYELGGITDYAETAMVECHGTGTPTGDPI  153
            AV++ ++ N DG+   L+ P+ + Q   +RRA    G+ D  +   VE HGTGTP GDPI
Sbjct  2    AVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGV-DPEDVDYVEAHGTGTPLGDPI  60

Query  154  EAAAVARVFGDKG----VYIGSVKPNLGHTEAASGLVSLLKMVKALEHRVIPPNIKFT  207
            EA A+ RVFG       + IGSVK N+GH E A+G   L+K+V AL H VIPP +   
Sbjct  61   EAEALKRVFGSGARKQPLAIGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTLNLE  118


>CDD:465059 pfam16197, KAsynt_C_assoc, Ketoacyl-synthetase C-terminal extension. 
 KAsynt_C_assoc represents the very C-terminus of a 
subset of proteins from the keto-acyl-synthetase 2 family. It 
is found in proteins ranging from bacteria to human.
Length=111

 Score = 124 bits (313),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 62/117 (53%), Gaps = 7/117 (6%)

Query  209  PNPNIP-FAEGKLTVPTDPLPWPKDRLERVSVNSFGIGGANAHVILESAATYNVPVAVHE  267
            PNP+IP   +G+L V T+P PWP      V VNSFG GGANAHVIL+S       +    
Sbjct  1    PNPDIPALLDGRLKVVTEPTPWPGGI---VGVNSFGFGGANAHVILKSN--PKPKIPPES  55

Query  268  TPETPQLLLFTANSSKSITRMIDGYKAWVEQNPDKVSDLAYTLARRREHLPHRAFAI  324
                P+L+L +  + +++  +++  +  +  + + +S L    +      P+R +AI
Sbjct  56   PDNLPRLVLLSGRTEEAVKALLEKLENHL-DDAEFLSLLNDIHSLPISGHPYRGYAI  111


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 107 bits (269),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 55/85 (65%), Gaps = 0/85 (0%)

Query  1    MTIRTACSSALVALNEACAAISRGDCGSALVGGVNLILAPGMSMAMQEQGVLSSDGSCKA  60
            +T+ TACSS+LVA++ A  +I  G+   AL GGVNL+L P         G+LS DG CKA
Sbjct  167  VTVDTACSSSLVAIHAAVQSIRSGEADVALAGGVNLLLTPLGFAGFSAAGMLSPDGPCKA  226

Query  61   FSADANGYARGEAVTAIFIKPLADA  85
            F   A+G+ RGE V A+ +K L+DA
Sbjct  227  FDPFADGFVRGEGVGAVVLKRLSDA  251


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 61.9 bits (151),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query  1688  GVGLAAIQVAQMLEADVYVTVGSEEKVKYLMENYHIPRHKIFHSRDRSFVDGVMRETKGR  1747
             GVGLAAIQ+A+   A V    GSEEK++   E        + + ++   V+ +   T G+
Sbjct  1     GVGLAAIQLAKAAGAKVIAVDGSEEKLELAKELGA---DHVINPKETDLVEEIKELTGGK  57

Query  1748  GMDFILNSL-SGELLHATWSCVAEFGTLLEIGKRDLIGDGKLDMRPFLANR  1797
             G+D + + + S   L      +   G ++ +G     G   L + P L   
Sbjct  58    GVDVVFDCVGSPATLEQALKLLRPGGRVVVVGL--PGGPLPLPLAPLLLKE  106


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 62.0 bits (151),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 28/122 (23%), Positives = 57/122 (47%), Gaps = 4/122 (3%)

Query  1738  DGVMRETKGRGMDFILNSLSGELLHATWSCVAEFGTLLEIGKRDLIGDGKLDMRPFLANR  1797
                ++ T G G+D +L+++ GE   A+   +   G L+ IG    +  G L        R
Sbjct  12    TDFVQATGGEGVDVVLDTVGGEAFEASLRVLPGGGRLVTIG-GPPLSAGLLLPARKRGGR  70

Query  1798  NYCCVDIDGLWKRIHVARALIFSILDFYDKGYITPLPMTIFPATQTQDAFRFMEKGQHIG  1857
                 V    L+ R ++   ++  + D  ++G + P+   +FP  +  +A R++E G+  G
Sbjct  71    G---VKYLFLFVRPNLGADILQELADLIEEGKLRPVIDRVFPLEEAAEAHRYLESGRARG  127

Query  1858  RV  1859
             ++
Sbjct  128   KI  129



Lambda      K        H        a         alpha
   0.319    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2831042688


Query= TCONS_00023186

Length=1926
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  234     3e-70
CDD:434191 pfam14765, PS-DH, Polyketide synthase dehydratase. Thi...  236     3e-70
CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          190     4e-54
CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  140     3e-39
CDD:465059 pfam16197, KAsynt_C_assoc, Ketoacyl-synthetase C-termi...  124     1e-33


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 234 bits (600),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 104/255 (41%), Positives = 142/255 (56%), Gaps = 11/255 (4%)

Query  68   PIAICGMACRLPGGLTTPDELWDFLLAKKDARCRVPHSRYDIDSYY-SDTKKPGTVSTEY  126
            P+AI GM CR PGG   P+E W+ LL  +D    +P  R+D D  Y   ++  G + T++
Sbjct  2    PVAIVGMGCRFPGGND-PEEFWENLLEGRDGISEIPADRWDPDKLYDPPSRIAGKIYTKW  60

Query  127  GYFLDESVDVGALDTSFFSMTRTEVERADPQQRLMLEVAREAFEDAGVT--HWRGKTIGT  184
            G       D+   D  FF ++  E ER DPQQRL+LE A EA EDAG+T     G   G 
Sbjct  61   GGL----DDIFDFDPLFFGISPREAERMDPQQRLLLEAAWEALEDAGITPDSLDGSRTGV  116

Query  185  YIGNFGEDWLEM---FGKETQPWGIHRISGSGDFVVANRLSYEFDLQGPSMTIRTACSSA  241
            +IG+   D+  +           G     G+   V+A R+SY   L+GPS+T+ TACSS+
Sbjct  117  FIGSGIGDYAALLLLDEDGGPRRGSPFAVGTMPSVIAGRISYFLGLRGPSVTVDTACSSS  176

Query  242  LVALNEACAAISRGDCGSALVGGVNLILAPGMSMAMQEQGVLSSDGSCKAFSADANGYAR  301
            LVA++ A  +I  G+   AL GGVNL+L P         G+LS DG CKAF   A+G+ R
Sbjct  177  LVAIHAAVQSIRSGEADVALAGGVNLLLTPLGFAGFSAAGMLSPDGPCKAFDPFADGFVR  236

Query  302  GEAVTAIFIKPLADA  316
            GE V A+ +K L+DA
Sbjct  237  GEGVGAVVLKRLSDA  251


>CDD:434191 pfam14765, PS-DH, Polyketide synthase dehydratase.  This is the 
dehydratase domain of polyketide synthases. Structural analysis 
shows these DH domains are double hotdogs in which the 
active site contains a histidine from the N-terminal hotdog 
and an aspartate from the C-terminal hotdog. Studies have 
uncovered that a substrate tunnel formed between the DH domains 
may be essential for loading substrates and unloading products.
Length=296

 Score = 236 bits (604),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 93/289 (32%), Positives = 137/289 (47%), Gaps = 18/289 (6%)

Query  950   HDLLGARVAESSDGEPAWRNMFHVTNTPWMRDHKVGEHIVFPFCGYIALAGEAIRQLTNV  1009
             H LLG+RV   SD EP WRN   + + PW+RDH+VG  +V P  GY+ +A EA RQL   
Sbjct  1     HPLLGSRVPSPSDLEPVWRNRLRLADLPWLRDHRVGGTVVLPGAGYLEMALEAARQLFGG  60

Query  1010  EEGFSVRNIIVSTALVLSEGKPTEMMATFRPHRLTNFLNSAWWEFTVSAYNGR--NWTKH  1067
                 ++R++ +  ALVL E  P E+  +  P         +WWEF + +  G    WT H
Sbjct  61    SGAVALRDVSILKALVLPEDDPVEVQTSLTPEED---GADSWWEFEIFSRAGGGWEWTLH  117

Query  1068  CTGEVCAQSSAPEQTQDPAGLP---------RTLNVRKWYEKMGKGGLNLGGSFQTLETM  1118
              TG V      P    D   LP         R+++  ++YE++   GL  G +FQ L  +
Sbjct  118   ATGTVRLAPGEPAAPVDLESLPARCAQPADPRSVSSAEFYERLAARGLFYGPAFQGLRRI  177

Query  1119  TTSTSEQRAVGKVVNGRQGDEANYHIHPTVLDATLQILGAAAVKGYARKTKTWLPTSIDK  1178
                  E  A  ++     G E+ Y +HP +LDA LQ+LGAA         + +LP  I++
Sbjct  178   WRGDGEALAEARLPEAAAGGESPYLLHPALLDAALQLLGAALPAEAEHADQAYLPVGIER  237

Query  1179  FTVHRC-ASDMVTSVSAQLSS--NFSVVGDGRCT-SGGTTVVDAVGIRM  1223
               ++R         V A+L      ++VGD       G  V    G+R+
Sbjct  238   LRIYRSLPPGEPLWVHARLERRGGRTIVGDLTLVDEDGRVVARIEGLRL  286


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 190 bits (485),  Expect = 4e-54, Method: Composition-based stats.
 Identities = 113/332 (34%), Positives = 158/332 (48%), Gaps = 17/332 (5%)

Query  579  VMVFTGQGAQWPQMGRDLLRSNDVFRSSIRLLDQHLQTIAGEKPQYSIE-EELKKPAKKS  637
            V VF+GQG+QW  MG  LL+++  F + I   D+        KPQY     ++ +   + 
Sbjct  1    VFVFSGQGSQWAGMGMQLLKTSPAFAAVIDRADEAF------KPQYGFSVSDVLRNNPEG  54

Query  638  RLSLAEFSQPLCTAVQIALVDTLASAGIHPDAVVGHSSGEIAAAYAAGALSAGEAITAAH  697
             L   +F QP   A+QIAL   L S G+ PDAVVGHS GE AAA  AGALS  EA+ AA 
Sbjct  55   TLDGTQFVQPALFAMQIALAALLQSYGVRPDAVVGHSLGEYAAAVVAGALSPEEALLAAV  114

Query  698  HRGAVTSRQKRVGTMAAIGMSWAETEKYLVPNVTIACDNSPRSVTISGDVDAVKSVVAAI  757
             R  +  +    G MAA+ +S  E E+    +V  A  NSPRSV ISG  +AV+ +V  +
Sbjct  115  LRSRLMMQLAGPGGMAAVELSAEEVEQRWPDDVVGAVVNSPRSVVISGPQEAVRELVERV  174

Query  758  KEAQPQMLARLLQVDKAYHSYHMKEIGEDYQSLINEEVVGREPSALFFSSVTGQVLGPDH  817
               +  + A +  V+ A HS  M  I     S +  ++  R P   F SS +        
Sbjct  175  S--KEGVGALVENVNYAVHSPQMDAIAPALLSAL-ADIAPRTPRVPFISSTSIDPSDQRT  231

Query  818  STWSKYWQENLESPVRFREAVTAILKHDVGKNAVFLEVGPHGALAGPLRQIFTQATSSAP  877
             + ++YW  NL SPVRF EA+ +  +       VF+E+ PH  L   L      A+    
Sbjct  232  LS-AEYWVRNLRSPVRFAEAILSAAE---PGPLVFIEISPHPLLLAALIDTLKSASDGKV  287

Query  878  YVSV--MARNQDCNAS-FLAAIGALHSLNVDV  906
               V  + R+Q      FL  +   H      
Sbjct  288  ATLVGTLIRDQTDFLVTFLYILAVAHLTGSAP  319


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 140 bits (355),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 54/122 (44%), Positives = 71/122 (58%), Gaps = 13/122 (11%)

Query  325  AVVRATSHNADGKTPTLSQPSTDAQEALMRRAYELGGIT----DYAETAMVECHGTGTPT  380
            AV++ ++ N DG+   L+ P+ + Q   +RRA    G+     DY     VE HGTGTP 
Sbjct  2    AVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDPEDVDY-----VEAHGTGTPL  56

Query  381  GDPIEAAAVARVFGDKG----VYIGSVKPNLGHTEAASGLVSLLKMVKALEHRVIPPNIK  436
            GDPIEA A+ RVFG       + IGSVK N+GH E A+G   L+K+V AL H VIPP + 
Sbjct  57   GDPIEAEALKRVFGSGARKQPLAIGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTLN  116

Query  437  FT  438
              
Sbjct  117  LE  118


>CDD:465059 pfam16197, KAsynt_C_assoc, Ketoacyl-synthetase C-terminal extension. 
 KAsynt_C_assoc represents the very C-terminus of a 
subset of proteins from the keto-acyl-synthetase 2 family. It 
is found in proteins ranging from bacteria to human.
Length=111

 Score = 124 bits (313),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 62/117 (53%), Gaps = 7/117 (6%)

Query  440  PNPNIP-FAEGKLTVPTDPLPWPKDRLERVSVNSFGIGGANAHVILESAATYNVPVAVHE  498
            PNP+IP   +G+L V T+P PWP      V VNSFG GGANAHVIL+S       +    
Sbjct  1    PNPDIPALLDGRLKVVTEPTPWPGGI---VGVNSFGFGGANAHVILKSN--PKPKIPPES  55

Query  499  TPETPQLLLFTANSSKSITRMIDGYKAWVEQNPDKVSDLAYTLARRREHLPHRAFAI  555
                P+L+L +  + +++  +++  +  +  + + +S L    +      P+R +AI
Sbjct  56   PDNLPRLVLLSGRTEEAVKALLEKLENHL-DDAEFLSLLNDIHSLPISGHPYRGYAI  111



Lambda      K        H        a         alpha
   0.318    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2441953624


Query= TCONS_00023187

Length=2514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  240     2e-73
CDD:434191 pfam14765, PS-DH, Polyketide synthase dehydratase. Thi...  237     2e-70
CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  233     8e-70
CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          190     5e-54
CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  140     6e-39
CDD:465059 pfam16197, KAsynt_C_assoc, Ketoacyl-synthetase C-termi...  124     1e-33
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          62.2    1e-11
CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        62.3    1e-11


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 240 bits (616),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 74/182 (41%), Positives = 111/182 (61%), Gaps = 5/182 (3%)

Query  2120  ASYLMVGGLGGIGRAVSTWMVDHGARELVYLSRSAGRTPKDDDFVTELQSMGCAVRLVSG  2179
              +YL+ GGLGG+GR ++ W+ + GAR LV LSRSA   P     + EL++ G  V +V+ 
Sbjct  1     GTYLITGGLGGLGRELARWLAERGARHLVLLSRSAAPRPDAQALIAELEARGVEVVVVAC  60

Query  2180  DTTKLADVQRAIAAA---TYPLKGIVQMSMVVANENFTRMSFAEWTASTAPKVQGTWNLH  2236
             D +    V   +A       P++G++  + V+ +     M+  +W    APKV GTWNLH
Sbjct  61    DVSDPDAVAALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLH  120

Query  2237  DASVAAGINLDFFVMFSSVSGIVGQAGQANYASGNSFLDAFAQYRNGLGLPASVVDMGAV  2296
             +A+      LDFFV+FSS++G++G  GQANYA+ N+FLDA A+YR   GLPA+ ++ G  
Sbjct  121   EAT--PDEPLDFFVLFSSIAGLLGSPGQANYAAANAFLDALAEYRRSQGLPATSINWGPW  178

Query  2297  ED  2298
              +
Sbjct  179   AE  180


>CDD:434191 pfam14765, PS-DH, Polyketide synthase dehydratase.  This is the 
dehydratase domain of polyketide synthases. Structural analysis 
shows these DH domains are double hotdogs in which the 
active site contains a histidine from the N-terminal hotdog 
and an aspartate from the C-terminal hotdog. Studies have 
uncovered that a substrate tunnel formed between the DH domains 
may be essential for loading substrates and unloading products.
Length=296

 Score = 237 bits (606),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 139/299 (46%), Gaps = 19/299 (6%)

Query  950   HDLLGARVAESSDGEPAWRNMFHVTNTPWMRDHKVGEHIVFPFCGYIALAGEAIRQLTNV  1009
             H LLG+RV   SD EP WRN   + + PW+RDH+VG  +V P  GY+ +A EA RQL   
Sbjct  1     HPLLGSRVPSPSDLEPVWRNRLRLADLPWLRDHRVGGTVVLPGAGYLEMALEAARQLFGG  60

Query  1010  EEGFSVRNIIVSTALVLSEGKPTEMMATFRPHRLTNFLNSAWWEFTVSAYNGR--NWTKH  1067
                 ++R++ +  ALVL E  P E+  +  P         +WWEF + +  G    WT H
Sbjct  61    SGAVALRDVSILKALVLPEDDPVEVQTSLTPEED---GADSWWEFEIFSRAGGGWEWTLH  117

Query  1068  CTGEVCAQSSAPEQTQDPAGLP---------RTLNVRKWYEKMGKGGLNLGGSFQTLETM  1118
              TG V      P    D   LP         R+++  ++YE++   GL  G +FQ L  +
Sbjct  118   ATGTVRLAPGEPAAPVDLESLPARCAQPADPRSVSSAEFYERLAARGLFYGPAFQGLRRI  177

Query  1119  TTSTSEQRAVGKVVNGRQGDEANYHIHPTVLDATLQILGAAAVKGYARKTKTWLPTSIDK  1178
                  E  A  ++     G E+ Y +HP +LDA LQ+LGAA         + +LP  I++
Sbjct  178   WRGDGEALAEARLPEAAAGGESPYLLHPALLDAALQLLGAALPAEAEHADQAYLPVGIER  237

Query  1179  FTVHRC-ASDMVTSVSAQLSS--NFSVVGDGRCT-SGGTTVVDAVGIRM-SLADGAGAA  1232
               ++R         V A+L      ++VGD       G  V    G+R+  +   A   
Sbjct  238   LRIYRSLPPGEPLWVHARLERRGGRTIVGDLTLVDEDGRVVARIEGLRLRRVEREALLR  296


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 233 bits (597),  Expect = 8e-70, Method: Composition-based stats.
 Identities = 104/255 (41%), Positives = 142/255 (56%), Gaps = 11/255 (4%)

Query  68   PIAICGMACRLPGGLTTPDELWDFLLAKKDARCRVPHSRYDIDSYY-SDTKKPGTVSTEY  126
            P+AI GM CR PGG   P+E W+ LL  +D    +P  R+D D  Y   ++  G + T++
Sbjct  2    PVAIVGMGCRFPGGND-PEEFWENLLEGRDGISEIPADRWDPDKLYDPPSRIAGKIYTKW  60

Query  127  GYFLDESVDVGALDTSFFSMTRTEVERADPQQRLMLEVAREAFEDAGVT--HWRGKTIGT  184
            G       D+   D  FF ++  E ER DPQQRL+LE A EA EDAG+T     G   G 
Sbjct  61   GGL----DDIFDFDPLFFGISPREAERMDPQQRLLLEAAWEALEDAGITPDSLDGSRTGV  116

Query  185  YIGNFGEDWLEM---FGKETQPWGIHRISGSGDFVVANRLSYEFDLQGPSMTIRTACSSA  241
            +IG+   D+  +           G     G+   V+A R+SY   L+GPS+T+ TACSS+
Sbjct  117  FIGSGIGDYAALLLLDEDGGPRRGSPFAVGTMPSVIAGRISYFLGLRGPSVTVDTACSSS  176

Query  242  LVALNEACAAISRGDCGSALVGGVNLILAPGMSMAMQEQGVLSSDGSCKAFSADANGYAR  301
            LVA++ A  +I  G+   AL GGVNL+L P         G+LS DG CKAF   A+G+ R
Sbjct  177  LVAIHAAVQSIRSGEADVALAGGVNLLLTPLGFAGFSAAGMLSPDGPCKAFDPFADGFVR  236

Query  302  GEAVTAIFIKPLADA  316
            GE V A+ +K L+DA
Sbjct  237  GEGVGAVVLKRLSDA  251


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 190 bits (485),  Expect = 5e-54, Method: Composition-based stats.
 Identities = 113/332 (34%), Positives = 158/332 (48%), Gaps = 17/332 (5%)

Query  579  VMVFTGQGAQWPQMGRDLLRSNDVFRSSIRLLDQHLQTIAGEKPQYSIE-EELKKPAKKS  637
            V VF+GQG+QW  MG  LL+++  F + I   D+        KPQY     ++ +   + 
Sbjct  1    VFVFSGQGSQWAGMGMQLLKTSPAFAAVIDRADEAF------KPQYGFSVSDVLRNNPEG  54

Query  638  RLSLAEFSQPLCTAVQIALVDTLASAGIHPDAVVGHSSGEIAAAYAAGALSAGEAITAAH  697
             L   +F QP   A+QIAL   L S G+ PDAVVGHS GE AAA  AGALS  EA+ AA 
Sbjct  55   TLDGTQFVQPALFAMQIALAALLQSYGVRPDAVVGHSLGEYAAAVVAGALSPEEALLAAV  114

Query  698  HRGAVTSRQKRVGTMAAIGMSWAETEKYLVPNVTIACDNSPRSVTISGDVDAVKSVVAAI  757
             R  +  +    G MAA+ +S  E E+    +V  A  NSPRSV ISG  +AV+ +V  +
Sbjct  115  LRSRLMMQLAGPGGMAAVELSAEEVEQRWPDDVVGAVVNSPRSVVISGPQEAVRELVERV  174

Query  758  KEAQPQMLARLLQVDKAYHSYHMKEIGEDYQSLINEEVVGREPSALFFSSVTGQVLGPDH  817
               +  + A +  V+ A HS  M  I     S +  ++  R P   F SS +        
Sbjct  175  S--KEGVGALVENVNYAVHSPQMDAIAPALLSAL-ADIAPRTPRVPFISSTSIDPSDQRT  231

Query  818  STWSKYWQENLESPVRFREAVTAILKHDVGKNAVFLEVGPHGALAGPLRQIFTQATSSAP  877
             + ++YW  NL SPVRF EA+ +  +       VF+E+ PH  L   L      A+    
Sbjct  232  LS-AEYWVRNLRSPVRFAEAILSAAE---PGPLVFIEISPHPLLLAALIDTLKSASDGKV  287

Query  878  YVSV--MARNQDCNAS-FLAAIGALHSLNVDV  906
               V  + R+Q      FL  +   H      
Sbjct  288  ATLVGTLIRDQTDFLVTFLYILAVAHLTGSAP  319


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 140 bits (354),  Expect = 6e-39, Method: Composition-based stats.
 Identities = 53/118 (45%), Positives = 71/118 (60%), Gaps = 5/118 (4%)

Query  325  AVVRATSHNADGKTPTLSQPSTDAQEALMRRAYELGGITDYAETAMVECHGTGTPTGDPI  384
            AV++ ++ N DG+   L+ P+ + Q   +RRA    G+ D  +   VE HGTGTP GDPI
Sbjct  2    AVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGV-DPEDVDYVEAHGTGTPLGDPI  60

Query  385  EAAAVARVFGDKG----VYIGSVKPNLGHTEAASGLVSLLKMVKALEHRVIPPNIKFT  438
            EA A+ RVFG       + IGSVK N+GH E A+G   L+K+V AL H VIPP +   
Sbjct  61   EAEALKRVFGSGARKQPLAIGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTLNLE  118


>CDD:465059 pfam16197, KAsynt_C_assoc, Ketoacyl-synthetase C-terminal extension. 
 KAsynt_C_assoc represents the very C-terminus of a 
subset of proteins from the keto-acyl-synthetase 2 family. It 
is found in proteins ranging from bacteria to human.
Length=111

 Score = 124 bits (313),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 62/117 (53%), Gaps = 7/117 (6%)

Query  440  PNPNIP-FAEGKLTVPTDPLPWPKDRLERVSVNSFGIGGANAHVILESAATYNVPVAVHE  498
            PNP+IP   +G+L V T+P PWP      V VNSFG GGANAHVIL+S       +    
Sbjct  1    PNPDIPALLDGRLKVVTEPTPWPGGI---VGVNSFGFGGANAHVILKSN--PKPKIPPES  55

Query  499  TPETPQLLLFTANSSKSITRMIDGYKAWVEQNPDKVSDLAYTLARRREHLPHRAFAI  555
                P+L+L +  + +++  +++  +  +  + + +S L    +      P+R +AI
Sbjct  56   PDNLPRLVLLSGRTEEAVKALLEKLENHL-DDAEFLSLLNDIHSLPISGHPYRGYAI  111


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 62.2 bits (152),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 31/112 (28%), Positives = 51/112 (46%), Gaps = 8/112 (7%)

Query  1919  GVGLAAIQVAQMLEADVYVTVGSEEKVKYLMENYHIPRHKIFHSRDRSFVDGVMRETKGR  1978
             GVGLAAIQ+A+   A V    GSEEK++   E        + + ++   V+ +   T G+
Sbjct  1     GVGLAAIQLAKAAGAKVIAVDGSEEKLELAKELGA---DHVINPKETDLVEEIKELTGGK  57

Query  1979  GMDFILNSL-SGELLHATWSCVAEFGTLLEIGKRDLIGDG-KLDMRPFLANR  2028
             G+D + + + S   L      +   G ++ +G   L G    L + P L   
Sbjct  58    GVDVVFDCVGSPATLEQALKLLRPGGRVVVVG---LPGGPLPLPLAPLLLKE  106


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 62.3 bits (152),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 28/122 (23%), Positives = 57/122 (47%), Gaps = 4/122 (3%)

Query  1969  DGVMRETKGRGMDFILNSLSGELLHATWSCVAEFGTLLEIGKRDLIGDGKLDMRPFLANR  2028
                ++ T G G+D +L+++ GE   A+   +   G L+ IG    +  G L        R
Sbjct  12    TDFVQATGGEGVDVVLDTVGGEAFEASLRVLPGGGRLVTIG-GPPLSAGLLLPARKRGGR  70

Query  2029  NYCCVDIDGLWKRIHVARALIFSILDFYDKGYITPLPMTIFPATQTQDAFRFMEKGQHIG  2088
                 V    L+ R ++   ++  + D  ++G + P+   +FP  +  +A R++E G+  G
Sbjct  71    G---VKYLFLFVRPNLGADILQELADLIEEGKLRPVIDRVFPLEEAAEAHRYLESGRARG  127

Query  2089  RV  2090
             ++
Sbjct  128   KI  129



Lambda      K        H        a         alpha
   0.318    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3130891776


Query= TCONS_00023188

Length=515


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00027520

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00023190

Length=786


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1006965184


Query= TCONS_00027521

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0736    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00023191

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  243     4e-76


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 243 bits (623),  Expect = 4e-76, Method: Composition-based stats.
 Identities = 111/429 (26%), Positives = 193/429 (45%), Gaps = 32/429 (7%)

Query  13   ILRYYIVGNMERLTVTSPAVLREILVSKAYEFA---KPLVIQQTLRRVLGNGILIAEGEE  69
            I R Y +G    + ++ P  ++E+L+ K  EF+          +    LG GI+ A G  
Sbjct  36   IFRLY-LGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGIVFANGPR  94

Query  70   HKFQRKNLKPAFAYRHVKDLYSVFWSKGTEMTKLIRNDLQSRKAPDDNTIQVRTWASRSS  129
             +  R+ L P F              +  ++ + +R     + A +   I +     R++
Sbjct  95   WRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLR-----KTAGEPGVIDITDLLFRAA  149

Query  130  LDIIGLAGMGRDFGSLQDPENSLSRSYEMIFATPGLGTKILFILGMLLGNTTWLAKLPTK  189
            L++I     G  FGSL+DP+       E++ A   L + +      LL     L   P  
Sbjct  150  LNVICSILFGERFGSLEDPKFL-----ELVKAVQELSSLLSSPSPQLLDLFPILKYFPGP  204

Query  190  QNRLIDTGCRNIRDATRRMIREQKAKMEDPNAAAEVDIISVAM------RSGNFDDDNLV  243
              R +    + I+D   ++I E++  + D    +  D +   +            D+ L 
Sbjct  205  HGRKLKRARKKIKDLLDKLIEERRETL-DSAKKSPRDFLDALLLAKEEEDGSKLTDEELR  263

Query  244  DQLMTFLGAGHETTAGALQWAIYALCKHPDVQSRLREEVRANLPPIHGENPGPIDAATID  303
              ++    AG +TT+  L WA+Y L KHP+VQ +LREE+   +               + 
Sbjct  264  ATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDK-----RSPTYDDLQ  318

Query  304  SLPYLNAVCNEVIRFHPSVPNTV-RVALNDTTLMGHPIPKGTQVVISPELVNHMPALWGP  362
            ++PYL+AV  E +R HP VP  + R    DT + G+ IPKGT V+++   ++  P ++ P
Sbjct  319  NMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNLYALHRDPEVF-P  377

Query  363  DAERFNPDRWMGPGKANTGGAASNYAFLSFLHGPRSCIGQVFAKAELACLLAAVVGSFAF  422
            + E F+P+R++            ++AFL F  GPR+C+G+  A+ E+   LA ++ +F  
Sbjct  378  NPEEFDPERFL-DENGKFR---KSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEV  433

Query  423  ELKSPDAPL  431
            EL     P 
Sbjct  434  ELPPGTDPP  442



Lambda      K        H        a         alpha
   0.319    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00023192

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  251     4e-78


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 251 bits (644),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 119/468 (25%), Positives = 205/468 (44%), Gaps = 39/468 (8%)

Query  65   PAPPNRHWLTGNTGSLLVDT---PHALMKEWAKTIPNDGILRYYIVGNMERLTVTSPAVL  121
            P  P    L GN   L +      H++  +  K      I R Y +G    + ++ P  +
Sbjct  1    PPGPPPLPLFGN--LLQLGRKGNLHSVFTKLQKKY--GPIFRLY-LGPKPVVVLSGPEAV  55

Query  122  REILVSKAYEFA---KPLVIQQTLRRVLGNGILIAEGEEHKFQRKNLKPAFAYRHVKDLY  178
            +E+L+ K  EF+          +    LG GI+ A G   +  R+ L P F         
Sbjct  56   KEVLIKKGEEFSGRPDEPWFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGKLSFE  115

Query  179  SVFWSKGTEMTKLIRNDLQSRKAPDDNTIQVRTWASRSSLDIIGLAGMGRDFGSLQDPEN  238
                 +  ++ + +R     + A +   I +     R++L++I     G  FGSL+DP+ 
Sbjct  116  PRVEEEARDLVEKLR-----KTAGEPGVIDITDLLFRAALNVICSILFGERFGSLEDPKF  170

Query  239  SLSRSYEMIFATPGLGTKILFILGMLLGNTTWLAKLPTKQNRLIDTGCRNIRDATRRMIR  298
                  E++ A   L + +      LL     L   P    R +    + I+D   ++I 
Sbjct  171  L-----ELVKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDLLDKLIE  225

Query  299  EQKAKMEDPNAAAEVDIISVAM------RSGNFDDDNLVDQLMTFLGAGHETTAGALQWA  352
            E++  + D    +  D +   +            D+ L   ++    AG +TT+  L WA
Sbjct  226  ERRETL-DSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWA  284

Query  353  IYALCKHPDVQSRLREEVRANLPPIHGENPGPIDAATIDSLPYLNAVCNEVIRFHPSVPN  412
            +Y L KHP+VQ +LREE+   +               + ++PYL+AV  E +R HP VP 
Sbjct  285  LYELAKHPEVQEKLREEIDEVIGDK-----RSPTYDDLQNMPYLDAVIKETLRLHPVVPL  339

Query  413  TV-RVALNDTTLMGHPIPKGTQVVISPELVNHMPALWGPDAERFNPDRWMGPGKANTGGA  471
             + R    DT + G+ IPKGT V+++   ++  P ++ P+ E F+P+R++          
Sbjct  340  LLPREVTKDTVIPGYLIPKGTLVIVNLYALHRDPEVF-PNPEEFDPERFL-DENGKFR--  395

Query  472  ASNYAFLSFLHGPRSCIGQVFAKAELACLLAAVVGSFAFELKSPDAPL  519
              ++AFL F  GPR+C+G+  A+ E+   LA ++ +F  EL     P 
Sbjct  396  -KSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPGTDPP  442



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684357832


Query= TCONS_00027522

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  80.4    6e-18


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 80.4 bits (199),  Expect = 6e-18, Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 90/273 (33%), Gaps = 48/273 (18%)

Query  49   VFITGATGFLGSATAVAALKAGYRLRICVRKPSDELQNLLSGYSEQVEFVTVADWTAEGA  108
            + +TGATGF+GS      L+ GY +    R  S      L      + FV   D T   A
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARL----ADLRFVEG-DLTDRDA  55

Query  109  FRGLLD--GADYVIHLA---HPIPSGPEKEYYFTPAVKATTALLREAARVPSIKKVVVTS  163
               LL     D VIHLA       S  + E +    V  T  LL EAAR   +K+ +  S
Sbjct  56   LEKLLADVRPDAVIHLAAVGGVGASIEDPEDFIEANVLGTLNLL-EAARKAGVKRFLFAS  114

Query  164  SIAALMPLDGIPSGGVIKEDNDWDFDVDETEDFAASNDPRGIPMRLYHASKLLANQTAWE  223
            S         IP             +   T   A        P   Y A+KL        
Sbjct  115  SSEVYGDGAEIP-----------QEETTLTGPLA--------PNSPYAAAKLAGEWLVLA  155

Query  224  FRKTAKPPYALVTLHPAFVYGRNPVQTT--------AEAIQESSNGLLWHAIMTGVPHHS  275
            +          V L    VYG    +             I E    LLW     G     
Sbjct  156  YAAAYGLRA--VILRLFNVYGPGDNEGFVSRVIPALIRRILEGKPILLWG---DGTQRRD  210

Query  276  YSRVPGVHIDDVVEAHLRALDPAIPDGSKYLLA  308
            +     +++DDV  A L AL+     G  Y + 
Sbjct  211  F-----LYVDDVARAILLALEHGAVKGEIYNIG  238



Lambda      K        H        a         alpha
   0.318    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453018240


Query= TCONS_00023193

Length=289
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  70.8    5e-15


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 70.8 bits (174),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 69/292 (24%), Positives = 90/292 (31%), Gaps = 67/292 (23%)

Query  6    VFITGATGFLGSATAVAALKAGYRLRICVRKPSDELQNLLSGYSEQVEFVTVADWTAEGA  65
            + +TGATGF+GS      L+ GY +    R  S      L      + FV   D T   A
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARL----ADLRFVEG-DLTDRDA  55

Query  66   FRGLLD--GADYVIHLA---HPIPSGPEKEYYFTPAVKATTALLREAARVPSIKKVVVTS  120
               LL     D VIHLA       S  + E +    V  T  LL EAAR   +K+ +  S
Sbjct  56   LEKLLADVRPDAVIHLAAVGGVGASIEDPEDFIEANVLGTLNLL-EAARKAGVKRFLFAS  114

Query  121  SIAALMPLDGIPSGGVIKGAFSGLLGRAYRTWTDIIPEDNDWDFDVDETEDFAASNDPRG  180
            S         IP                                +   T   A       
Sbjct  115  SSEVYGDGAEIP------------------------------QEETTLTGPLA-------  137

Query  181  IPMRLYHASKLLANQTAWEFRKTAKPPYALVTLHPAFVYGRNPVQTT--------AEAIQ  232
             P   Y A+KL        +          V L    VYG    +             I 
Sbjct  138  -PNSPYAAAKLAGEWLVLAYAAAYGLRA--VILRLFNVYGPGDNEGFVSRVIPALIRRIL  194

Query  233  ESSNGLLWHAIMTGVPHHSYSRVPGVHIDDVVEAHLRALDPAIPDGSKYLLA  284
            E    LLW     G     +     +++DDV  A L AL+     G  Y + 
Sbjct  195  EGKPILLWG---DGTQRRDF-----LYVDDVARAILLALEHGAVKGEIYNIG  238



Lambda      K        H        a         alpha
   0.319    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 327287968


Query= TCONS_00023194

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase sub...  74.9    8e-18


>CDD:400688 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate 
binding domain.  This domain is the substrate binding domain 
of shikimate dehydrogenase.
Length=83

 Score = 74.9 bits (185),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 28/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query  12  LVGVGVTHSIAPGMHTHIARSLQLPWTFHATECP--SLADALALARSPATAGLVVTMPYK  69
           ++G  ++HS++P +H    ++L L   + A E P  +L D +   R+    GL VT+P+K
Sbjct  1   VIGNPISHSLSPAIHNAAFKALGLNGVYVAFEVPPDNLPDFVEGLRALGFRGLNVTIPHK  60

Query  70  NSIIPHLDEPDDLVTMIGACNNV  92
            + IP LDE       IGA N +
Sbjct  61  EAAIPLLDELSPEAKAIGAVNTI  83



Lambda      K        H        a         alpha
   0.319    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00023195

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00023196

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  55.4    8e-11


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 55.4 bits (134),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 20/32 (63%), Gaps = 0/32 (0%)

Query  14  RACDQCRRRKSKCDGAQPVCGICRSAGRTCTY  45
            ACD CR+RK KCDG +P C  C   G  CTY
Sbjct  1   TACDNCRKRKVKCDGKKPACSRCIKNGLECTY  32



Lambda      K        H        a         alpha
   0.321    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00027523

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460118 pfam01220, DHquinase_II, Dehydroquinase class II           244     1e-85


>CDD:460118 pfam01220, DHquinase_II, Dehydroquinase class II.  
Length=138

 Score = 244 bits (627),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 88/138 (64%), Positives = 104/138 (75%), Gaps = 0/138 (0%)

Query  3    SILLINGPNLNLLGTREPHLYGRTTLPQLEDNAKALAAAKGVKLESFHSNHEGRIIDRIH  62
             IL++NGPNLNLLGTREP +YG TTL  +E   + LAA  GV+LE F SNHEG +IDRIH
Sbjct  1    KILVLNGPNLNLLGTREPEIYGSTTLADIEAALRELAAELGVELEFFQSNHEGELIDRIH  60

Query  63   EARGHTDAIIINPGAFTHTSVAIRDALIGVSVPFIEVHITNVHAREEFRHHSYLSDKAAA  122
            EARG  D IIINPGA+THTSVA+RDAL  V +P +EVH++N+HAREEFRHHSY+S  A  
Sbjct  61   EARGGVDGIIINPGAYTHTSVALRDALAAVEIPVVEVHLSNIHAREEFRHHSYISPVAVG  120

Query  123  CIIGLGTYGYEAAIEYAA  140
             I G G  GY  A+E  A
Sbjct  121  VIAGFGADGYLLALEALA  138



Lambda      K        H        a         alpha
   0.320    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00023197

Length=646


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 815558870


Query= TCONS_00023198

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00023199

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00027524

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00023200

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464110 pfam14226, DIOX_N, non-haem dioxygenase in morphine sy...  127     1e-36
CDD:397334 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfam...  69.4    3e-15


>CDD:464110 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis 
N-terminal.  This is the highly conserved N-terminal region 
of proteins with 2-oxoglutarate/Fe(II)-dependent dioxygenase 
activity.
Length=116

 Score = 127 bits (320),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 50/123 (41%), Positives = 67/123 (54%), Gaps = 8/123 (7%)

Query  12   IPVLDFSLSASPDTKPRFLSELRNAVVNVGFFYLVHTPIAPHVQQAFIKKSLELFDLPLE  71
            IPV+D S    P+ +    ++LR A    GFF LV+  +   +     + + E F LPLE
Sbjct  1    IPVIDLSPLGDPEDRAAVAAQLREACREWGFFQLVNHGVPEELIDELFEAAREFFALPLE  60

Query  72   KKLEIEMVNSKHFLGYSRLGAETTAS-KTDYREQFDFATELPAPGPDEPVYRNIRGPNQW  130
            +KL+    N   F GY RLG E+T   K D++E FD  TELPA  P       +RGPNQW
Sbjct  61   EKLKY--ANPPSFRGYGRLGVESTDGKKLDWKEFFDLGTELPADPPL-----PLRGPNQW  113

Query  131  PDE  133
            P+E
Sbjct  114  PEE  116


>CDD:397334 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily.  This 
family contains members of the 2-oxoglutarate (2OG) and 
Fe(II)-dependent oxygenase superfamily. This family includes 
the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme 
has the activity EC:1.14.11.2 catalyzing the reaction: 
Procollagen L-proline + 2-oxoglutarate + O2 <=> procollagen 
trans- 4-hydroxy-L-proline + succinate + CO2. The full 
enzyme consists of a alpha2 beta2 complex with the alpha subunit 
contributing most of the parts of the active site. The 
family also includes lysyl hydrolases, isopenicillin synthases 
and AlkB.
Length=101

 Score = 69.4 bits (170),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 49/105 (47%), Gaps = 11/105 (10%)

Query  184  LKLIKYPPPRSASQAQGVGAHKDSEFLTFLLQATPHSGLEVQNKSGDWIPAPPLDGSLVV  243
            L L  YPP        G+G H D+  LT LLQ     GL+V  K G WI  PPL G+LVV
Sbjct  5    LVLNYYPPHPDPDLTLGLGPHTDASILTILLQ-DDVGGLQVF-KDGKWIDVPPLPGALVV  62

Query  244  NIGRALEAVTGGVCTATTHRVNLRPENFIDAEGKPLGPRFSFPVF  288
            NIG  LE ++ G   +  HRV   P N           R S   F
Sbjct  63   NIGDQLELLSNGRYKSVLHRV--LPVN-------KGKERISIAFF  98



Lambda      K        H        a         alpha
   0.318    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00023201

Length=399


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 481536020


Query= TCONS_00027526

Length=238


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00027527

Length=477


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593543448


Query= TCONS_00023205

Length=250


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00027528

Length=477


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593543448


Query= TCONS_00027529

Length=250


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00027530

Length=486


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00027531

Length=486


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00023203

Length=477


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593543448


Query= TCONS_00023204

Length=250


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00023207

Length=261


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00023206

Length=486


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00023202

Length=315


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00023210

Length=486


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00023209

Length=440


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0703    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00023211

Length=492


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00023208

Length=315


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00027532

Length=315


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00023213

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023215

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  98.3    1e-26
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  61.8    2e-13


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 98.3 bits (245),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 47/176 (27%), Positives = 68/176 (39%), Gaps = 18/176 (10%)

Query  13   LHHHIHRLKLDGQLFRSPIPRDVSRILDLGTGTGIWAIEMADEFPTAKVIGNDLSPIQPT  72
              H   RL  D  L   P      R+LD G GTGI+   +  +  +  V G D SPI   
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAIE  58

Query  73   WVPPNLSFEVDDFESDWEYSKPFDFIHARDLQGSVSDYNRLVAQAFANLAPGGWFEFADA  132
                N+ F+  D +     +  FD I AR++   V D   L+ Q  A L PGG    +  
Sbjct  59   RALLNVRFDQFDEQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLLLST-  117

Query  133  DLLVCCDDETIKEAKN---MLEVNRLVCDASARFGKLMGTAKQHKQRLEDAGLVNV  185
                   DE  +       +   N  +          + +A+  K+ LE+AG   V
Sbjct  118  ---PLASDEADRLLLEWPYLRPRNGHIS---------LFSARSLKRLLEEAGFEVV  161


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 61.8 bits (151),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 26/97 (27%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query  38   ILDLGTGTGIWAIEMADEFPTAKVIGNDLSPIQPTWV-------PPNLSFEVDDFESDWE  90
            +LDLG GTG   + +A     A+V G DLSP               N+ F   D E    
Sbjct  1    VLDLGCGTGRLTLALARRGG-ARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAEDLPF  59

Query  91   YSKPFDFIHARDLQG--SVSDYNRLVAQAFANLAPGG  125
                FD + +  +       D    + +    L PGG
Sbjct  60   PDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96



Lambda      K        H        a         alpha
   0.320    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00023214

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  100     1e-26
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  62.6    2e-13


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 100 bits (250),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 47/176 (27%), Positives = 68/176 (39%), Gaps = 18/176 (10%)

Query  80   LHHHIHRLKLDGQLFRSPIPRDVSRILDLGTGTGIWAIEMADEFPTAKVIGNDLSPIQPT  139
              H   RL  D  L   P      R+LD G GTGI+   +  +  +  V G D SPI   
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAIE  58

Query  140  WVPPNLSFEVDDFESDWEYSKPFDFIHARDLQGSVSDYNRLVAQAFANLAPGGWFEFADA  199
                N+ F+  D +     +  FD I AR++   V D   L+ Q  A L PGG    +  
Sbjct  59   RALLNVRFDQFDEQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLLLST-  117

Query  200  DLLVCCDDETIKEAKN---MLEVNRLVCDASARFGKLMGTAKQHKQRLEDAGLVNV  252
                   DE  +       +   N  +          + +A+  K+ LE+AG   V
Sbjct  118  ---PLASDEADRLLLEWPYLRPRNGHIS---------LFSARSLKRLLEEAGFEVV  161


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 62.6 bits (153),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 26/97 (27%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query  105  ILDLGTGTGIWAIEMADEFPTAKVIGNDLSPIQPTWV-------PPNLSFEVDDFESDWE  157
            +LDLG GTG   + +A     A+V G DLSP               N+ F   D E    
Sbjct  1    VLDLGCGTGRLTLALARRGG-ARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAEDLPF  59

Query  158  YSKPFDFIHARDLQG--SVSDYNRLVAQAFANLAPGG  192
                FD + +  +       D    + +    L PGG
Sbjct  60   PDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96



Lambda      K        H        a         alpha
   0.316    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00023216

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  63.6    2e-13


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 63.6 bits (155),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 49/130 (38%), Gaps = 16/130 (12%)

Query  8    AKVIGNDLSPIQPTWVPPNLSFEVDDFESDWEYSKPFDFIHARDLQGSVSDYNRLVAQAF  67
              V G D SPI       N+ F+  D +     +  FD I AR++   V D   L+ Q  
Sbjct  45   FSVTGVDPSPIAIERALLNVRFDQFDEQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIA  104

Query  68   ANLAPGGWFEFADADLLVCCDDETIKEAKN---MLEVNRLVCDASARFGKLMGTAKQHKQ  124
            A L PGG    +         DE  +       +   N  +          + +A+  K+
Sbjct  105  ALLKPGGLLLLST----PLASDEADRLLLEWPYLRPRNGHIS---------LFSARSLKR  151

Query  125  RLEDAGLVNV  134
             LE+AG   V
Sbjct  152  LLEEAGFEVV  161



Lambda      K        H        a         alpha
   0.320    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00027533

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  98.3    2e-25
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  62.6    4e-13


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 98.3 bits (245),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 47/176 (27%), Positives = 68/176 (39%), Gaps = 18/176 (10%)

Query  80   LHHHIHRLKLDGQLFRSPIPRDVSRILDLGTGTGIWAIEMADEFPTAKVIGNDLSPIQPT  139
              H   RL  D  L   P      R+LD G GTGI+   +  +  +  V G D SPI   
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAIE  58

Query  140  WVPPNLSFEVDDFESDWEYSKPFDFIHARDLQGSVSDYNRLVAQAFANLAPGGWFEFADA  199
                N+ F+  D +     +  FD I AR++   V D   L+ Q  A L PGG    +  
Sbjct  59   RALLNVRFDQFDEQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLLLST-  117

Query  200  DLLVCCDDETIKEAKN---MLEVNRLVCDASARFGKLMGTAKQHKQRLEDAGLVNV  252
                   DE  +       +   N  +          + +A+  K+ LE+AG   V
Sbjct  118  ---PLASDEADRLLLEWPYLRPRNGHIS---------LFSARSLKRLLEEAGFEVV  161


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 62.6 bits (153),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 26/97 (27%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query  105  ILDLGTGTGIWAIEMADEFPTAKVIGNDLSPIQPTWV-------PPNLSFEVDDFESDWE  157
            +LDLG GTG   + +A     A+V G DLSP               N+ F   D E    
Sbjct  1    VLDLGCGTGRLTLALARRGG-ARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAEDLPF  59

Query  158  YSKPFDFIHARDLQG--SVSDYNRLVAQAFANLAPGG  192
                FD + +  +       D    + +    L PGG
Sbjct  60   PDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96



Lambda      K        H        a         alpha
   0.318    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00027534

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  100     2e-26
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  62.6    3e-13


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 100 bits (250),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 47/176 (27%), Positives = 68/176 (39%), Gaps = 18/176 (10%)

Query  80   LHHHIHRLKLDGQLFRSPIPRDVSRILDLGTGTGIWAIEMADEFPTAKVIGNDLSPIQPT  139
              H   RL  D  L   P      R+LD G GTGI+   +  +  +  V G D SPI   
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAIE  58

Query  140  WVPPNLSFEVDDFESDWEYSKPFDFIHARDLQGSVSDYNRLVAQAFANLAPGGWFEFADA  199
                N+ F+  D +     +  FD I AR++   V D   L+ Q  A L PGG    +  
Sbjct  59   RALLNVRFDQFDEQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLLLST-  117

Query  200  DLLVCCDDETIKEAKN---MLEVNRLVCDASARFGKLMGTAKQHKQRLEDAGLVNV  252
                   DE  +       +   N  +          + +A+  K+ LE+AG   V
Sbjct  118  ---PLASDEADRLLLEWPYLRPRNGHIS---------LFSARSLKRLLEEAGFEVV  161


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 62.6 bits (153),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 26/97 (27%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query  105  ILDLGTGTGIWAIEMADEFPTAKVIGNDLSPIQPTWV-------PPNLSFEVDDFESDWE  157
            +LDLG GTG   + +A     A+V G DLSP               N+ F   D E    
Sbjct  1    VLDLGCGTGRLTLALARRGG-ARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAEDLPF  59

Query  158  YSKPFDFIHARDLQG--SVSDYNRLVAQAFANLAPGG  192
                FD + +  +       D    + +    L PGG
Sbjct  60   PDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96



Lambda      K        H        a         alpha
   0.316    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00027535

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  96.3    3e-25
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  61.4    6e-13


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 96.3 bits (240),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 47/176 (27%), Positives = 68/176 (39%), Gaps = 18/176 (10%)

Query  13   LHHHIHRLKLDGQLFRSPIPRDVSRILDLGTGTGIWAIEMADEFPTAKVIGNDLSPIQPT  72
              H   RL  D  L   P      R+LD G GTGI+   +  +  +  V G D SPI   
Sbjct  1    YAHQRERLLADLLLRLLPKLPSPGRVLDFGCGTGIFLRLLRAQGFS--VTGVDPSPIAIE  58

Query  73   WVPPNLSFEVDDFESDWEYSKPFDFIHARDLQGSVSDYNRLVAQAFANLAPGGWFEFADA  132
                N+ F+  D +     +  FD I AR++   V D   L+ Q  A L PGG    +  
Sbjct  59   RALLNVRFDQFDEQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLLLST-  117

Query  133  DLLVCCDDETIKEAKN---MLEVNRLVCDASARFGKLMGTAKQHKQRLEDAGLVNV  185
                   DE  +       +   N  +          + +A+  K+ LE+AG   V
Sbjct  118  ---PLASDEADRLLLEWPYLRPRNGHIS---------LFSARSLKRLLEEAGFEVV  161


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 61.4 bits (150),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 26/97 (27%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query  38   ILDLGTGTGIWAIEMADEFPTAKVIGNDLSPIQPTWV-------PPNLSFEVDDFESDWE  90
            +LDLG GTG   + +A     A+V G DLSP               N+ F   D E    
Sbjct  1    VLDLGCGTGRLTLALARRGG-ARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAEDLPF  59

Query  91   YSKPFDFIHARDLQG--SVSDYNRLVAQAFANLAPGG  125
                FD + +  +       D    + +    L PGG
Sbjct  60   PDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96



Lambda      K        H        a         alpha
   0.321    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00023217

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  63.6    2e-13


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 63.6 bits (155),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 49/130 (38%), Gaps = 16/130 (12%)

Query  8    AKVIGNDLSPIQPTWVPPNLSFEVDDFESDWEYSKPFDFIHARDLQGSVSDYNRLVAQAF  67
              V G D SPI       N+ F+  D +     +  FD I AR++   V D   L+ Q  
Sbjct  45   FSVTGVDPSPIAIERALLNVRFDQFDEQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIA  104

Query  68   ANLAPGGWFEFADADLLVCCDDETIKEAKN---MLEVNRLVCDASARFGKLMGTAKQHKQ  124
            A L PGG    +         DE  +       +   N  +          + +A+  K+
Sbjct  105  ALLKPGGLLLLST----PLASDEADRLLLEWPYLRPRNGHIS---------LFSARSLKR  151

Query  125  RLEDAGLVNV  134
             LE+AG   V
Sbjct  152  LLEEAGFEVV  161



Lambda      K        H        a         alpha
   0.320    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00023218

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  63.6    2e-13


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 63.6 bits (155),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 49/130 (38%), Gaps = 16/130 (12%)

Query  8    AKVIGNDLSPIQPTWVPPNLSFEVDDFESDWEYSKPFDFIHARDLQGSVSDYNRLVAQAF  67
              V G D SPI       N+ F+  D +     +  FD I AR++   V D   L+ Q  
Sbjct  45   FSVTGVDPSPIAIERALLNVRFDQFDEQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIA  104

Query  68   ANLAPGGWFEFADADLLVCCDDETIKEAKN---MLEVNRLVCDASARFGKLMGTAKQHKQ  124
            A L PGG    +         DE  +       +   N  +          + +A+  K+
Sbjct  105  ALLKPGGLLLLST----PLASDEADRLLLEWPYLRPRNGHIS---------LFSARSLKR  151

Query  125  RLEDAGLVNV  134
             LE+AG   V
Sbjct  152  LLEEAGFEVV  161



Lambda      K        H        a         alpha
   0.320    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00027536

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00023219

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00023220

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00023221

Length=191


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.139    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00023223

Length=263


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 290477132


Query= TCONS_00023222

Length=310


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 355153814


Query= TCONS_00023224

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00023226

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  138     9e-41


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 138 bits (349),  Expect = 9e-41, Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 105/223 (47%), Gaps = 28/223 (13%)

Query  48   LHLHGGGFLFGTLASEDAICSRIVATLATENTPVVVVNVNYRHTPEYKYPVPWNDAADAL  107
            ++ HGGGF+ G+  + D +C R+ A         VVV+V+YR  PE+ +P  ++DA  AL
Sbjct  2    VYFHGGGFVLGSADTHDRLCRRLAA-----EAGAVVVSVDYRLAPEHPFPAAYDDAYAAL  56

Query  108  HWVHDHLAELGGDGDNVVVGGISAGAWMTASLTLAQHLGTDEQLAKRPKIRGQVLMIPPL  167
             W+ +  AELG D   + V G SAG  + A++ L      DE L   PK  GQVL I P 
Sbjct  57   RWLAEQAAELGADPSRIAVAGDSAGGNLAAAVALRAR---DEGL---PKPAGQVL-IYPG  109

Query  168  VGPGCYAPQLKYLKDPKLSSYVDSE--HAPILPVTRINSFMDLLEAKGHETDLVLNPGNA  225
                            +  SY+  E    P+L    ++ F  L        D + +P   
Sbjct  110  TDL-----------RTESPSYLAREFADGPLLTRAAMDWFWRLYLPGADRDDPLASPLF-  157

Query  226  TAEQVRGLPPTTFGIAGRDPLRDEGLFYAKLLTDNGWVRVEQR  268
             A  + GLPP    +A  DPLRDEG  YA+ L   G V VE  
Sbjct  158  -ASDLSGLPPALVVVAEFDPLRDEGEAYAERLRAAG-VPVELI  198



Lambda      K        H        a         alpha
   0.319    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00023225

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  140     6e-41


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 140 bits (354),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 105/223 (47%), Gaps = 28/223 (13%)

Query  93   LHLHGGGFLFGTLASEDAICSRIVATLATENTPVVVVNVNYRHTPEYKYPVPWNDAADAL  152
            ++ HGGGF+ G+  + D +C R+ A         VVV+V+YR  PE+ +P  ++DA  AL
Sbjct  2    VYFHGGGFVLGSADTHDRLCRRLAA-----EAGAVVVSVDYRLAPEHPFPAAYDDAYAAL  56

Query  153  HWVHDHLAELGGDGDNVVVGGISAGAWMTASLTLAQHLGTDEQLAKRPKIRGQVLMIPPL  212
             W+ +  AELG D   + V G SAG  + A++ L      DE L   PK  GQVL I P 
Sbjct  57   RWLAEQAAELGADPSRIAVAGDSAGGNLAAAVALRAR---DEGL---PKPAGQVL-IYPG  109

Query  213  VGPGCYAPQLKYLKDPKLSSYVDSE--HAPILPVTRINSFMDLLEAKGHETDLVLNPGNA  270
                            +  SY+  E    P+L    ++ F  L        D + +P   
Sbjct  110  TDL-----------RTESPSYLAREFADGPLLTRAAMDWFWRLYLPGADRDDPLASPLF-  157

Query  271  TAEQVRGLPPTTFGIAGRDPLRDEGLFYAKLLTDNGWVRVEQR  313
             A  + GLPP    +A  DPLRDEG  YA+ L   G V VE  
Sbjct  158  -ASDLSGLPPALVVVAEFDPLRDEGEAYAERLRAAG-VPVELI  198



Lambda      K        H        a         alpha
   0.318    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00023227

Length=359
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  162     4e-49


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 162 bits (412),  Expect = 4e-49, Method: Composition-based stats.
 Identities = 81/231 (35%), Positives = 114/231 (49%), Gaps = 27/231 (12%)

Query  93   LHLHGGGFLFGTLASEDAICSRIVATLATENTPVVVVNVNYRHTPEYKYPVPWNDAADAL  152
            ++ HGGGF+ G+  + D +C R+ A         VVV+V+YR  PE+ +P  ++DA  AL
Sbjct  2    VYFHGGGFVLGSADTHDRLCRRLAA-----EAGAVVVSVDYRLAPEHPFPAAYDDAYAAL  56

Query  153  HWVHDHLAELGGDGDNVVVGGISAGAWMTASLTLAQHLGTDEQLAKRPKIRGQVLMIPPL  212
             W+ +  AELG D   + V G SAG  + A++ L      DE L   PK  GQVL I P 
Sbjct  57   RWLAEQAAELGADPSRIAVAGDSAGGNLAAAVALRAR---DEGL---PKPAGQVL-IYPG  109

Query  213  VGPGCYAPQLKYLKDPKLSSYVDSE--HAPILPVTRINSFMDLLEAKGHETDLVLNPGNA  270
                            +  SY+  E    P+L    ++ F  L        D + +P   
Sbjct  110  TDL-----------RTESPSYLAREFADGPLLTRAAMDWFWRLYLPGADRDDPLASPLF-  157

Query  271  TAEQVRGLPPTTFGIAGRDPLRDEGLFYAKLLTDNGVPTDVHVFPGLPHGF  321
             A  + GLPP    +A  DPLRDEG  YA+ L   GVP ++  +PG+PHGF
Sbjct  158  -ASDLSGLPPALVVVAEFDPLRDEGEAYAERLRAAGVPVELIEYPGMPHGF  207



Lambda      K        H        a         alpha
   0.318    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00023228

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429415 pfam07335, Glyco_hydro_75, Fungal chitosanase of glyco...  107     2e-30


>CDD:429415 pfam07335, Glyco_hydro_75, Fungal chitosanase of glycosyl hydrolase 
group 75.  This family consists of several fungal chitosanase 
proteins. Chitin, xylan, 6-O-sulphated chitosan and 
O-carboxymethyl chitin are indigestible by chitosanase. EC:3.2.1.132. 
The mechanism is likely to be inverting, and the 
probable catalytic neutrophile base is Asp, with the probable 
catalytic proton donor being Glu. (see the Chitosanase web-page 
from CAZY).
Length=166

 Score = 107 bits (269),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 40/103 (39%), Positives = 55/103 (53%), Gaps = 20/103 (19%)

Query  1    MFYGILGDSNGDSP--QVTGEASWLMARTCFPNEGLNGNNGHTGVDVTCMFFSAIALPAL  58
            +FYGI GD+NGD     +TGEAS  +A  CF N+GLNGNNGH   DV             
Sbjct  79   LFYGIWGDTNGDDGPKPMTGEASISLATACFGNDGLNGNNGHDEKDVLY-----------  127

Query  59   MQADIVFTGKNAV--LPSSALTKNYITNF-TTLRSMGDKLVNA  98
                I FTG +AV     +       T+F ++++++GD+LV  
Sbjct  128  ----IAFTGSDAVPGADGANWKAKSFTDFESSIKALGDRLVAR  166



Lambda      K        H        a         alpha
   0.316    0.129    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00023229

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00027537

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00027538

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463473 pfam12146, Hydrolase_4, Serine aminopeptidase, S33. Th...  153     4e-46
CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  64.1    1e-12


>CDD:463473 pfam12146, Hydrolase_4, Serine aminopeptidase, S33.  This domain 
is found in bacteria and eukaryotes and is approximately 
110 amino acids in length. It is found in association with 
pfam00561. The majority of the members in this family carry 
the exopeptidase active-site residues of Ser-122, Asp-239 and 
His-269 as in UniProtKB:Q7ZWC2.
Length=238

 Score = 153 bits (390),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 109/253 (43%), Gaps = 18/253 (7%)

Query  28   TPPVAKLIHFHGFSDHINNTYDLFPSLARRGIFCTGIDQRGWGRSAQTKADRGNTGPTAA  87
              P A ++  HG  +H      L  +LA +G      D RG GRS      RG+      
Sbjct  1    GEPRAVVVLVHGLGEHSGRYAHLADALAAQGFAVYAYDHRGHGRSDGK---RGHVPSFDD  57

Query  88   ILADMAAFIEAQFEVPPDVPVFVMGHSMGGGLVATLASTPKYQELVSRLGGILLEAPFIG  147
             + D+  F++   E  P +P+F++GHSMGG + A  A   +Y + V    G++L AP + 
Sbjct  58   YVDDLDTFVDKIREEHPGLPLFLLGHSMGGLIAALYA--LRYPDKVD---GLILSAPALK  112

Query  148  LDPKQKPSIITVFLGRLAGRLLPRFQIVQPIKVETVVRDPVVQKTLKEDPLNHATGTLEM  207
            + P      I   L +L G+L PR ++   +  +++ RDP V      DPL H   +   
Sbjct  113  IKPY-LAPPILKLLAKLLGKLFPRLRVPNNLLPDSLSRDPEVVAAYAADPLVHGGISART  171

Query  208  FAHMLGRAADLTS--GKLVLNDGVKSVYVAHGTADQVTSYDASKHWFDAQTGKVADRQFK  265
               +L     L      + +      + + HG AD+V     S+ +++       D+  K
Sbjct  172  LYELLDAGERLLRRAAAITV-----PLLLLHGGADRVVDPAGSREFYERA--GSTDKTLK  224

Query  266  SYEGWSHLLHADL  278
             Y G  H L  + 
Sbjct  225  LYPGLYHELLNEP  237


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 64.1 bits (156),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 89/258 (34%), Gaps = 31/258 (12%)

Query  34   LIHFHGFSDHINNTYDLFPSLARRGIFCTGIDQRGWGRSAQTKADRGNTGPTAAILADMA  93
            ++  HG     +    L P+LAR G     +D RG+G+S  ++    +   T  +  D+ 
Sbjct  3    VLLLHGLPGSSDLWRKLAPALARDGFRVIALDLRGFGKS--SRPKAQDDYRTDDLAEDLE  60

Query  94   AFIEAQFEVPPDVPVFVMGHSMGGGLVATLASTPKYQELVSRLGGILLEAP---------  144
              +EA         V ++GHSMGG +    A+  KY + V  L  +LL A          
Sbjct  61   YILEAL----GLEKVNLVGHSMGGLIALAYAA--KYPDRVKAL--VLLGALDPPHELDEA  112

Query  145  ---FIGLDPKQKPSIITVFLGRLAGRLLPRFQ--IVQPIKVETVVRDPVVQKTLKEDPLN  199
                + L P      +  F     GRL+ +    ++  +++   +   + ++    D   
Sbjct  113  DRFILALFPGFFDGFVADFAPNPLGRLVAKLLALLLLRLRLLKALPL-LNKRFPSGDYAL  171

Query  200  HATGTLEMFAHMLGRAADLTSGKLVLNDGVKSVYVAHGTADQVTSYDASKHWFDAQTGKV  259
              +        +   + +L +    L    +   +  G  D +    A +          
Sbjct  172  AKSLVTGALLFIETWSTELRAKF--LGRLDEPTLIIWGDQDPLVPPQALEKL----AQLF  225

Query  260  ADRQFKSYEGWSHLLHAD  277
             + +        H    +
Sbjct  226  PNARLVVIPDAGHFAFLE  243



Lambda      K        H        a         alpha
   0.321    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00023230

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463473 pfam12146, Hydrolase_4, Serine aminopeptidase, S33. Th...  153     4e-46
CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  64.1    1e-12


>CDD:463473 pfam12146, Hydrolase_4, Serine aminopeptidase, S33.  This domain 
is found in bacteria and eukaryotes and is approximately 
110 amino acids in length. It is found in association with 
pfam00561. The majority of the members in this family carry 
the exopeptidase active-site residues of Ser-122, Asp-239 and 
His-269 as in UniProtKB:Q7ZWC2.
Length=238

 Score = 153 bits (390),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 109/253 (43%), Gaps = 18/253 (7%)

Query  28   TPPVAKLIHFHGFSDHINNTYDLFPSLARRGIFCTGIDQRGWGRSAQTKADRGNTGPTAA  87
              P A ++  HG  +H      L  +LA +G      D RG GRS      RG+      
Sbjct  1    GEPRAVVVLVHGLGEHSGRYAHLADALAAQGFAVYAYDHRGHGRSDGK---RGHVPSFDD  57

Query  88   ILADMAAFIEAQFEVPPDVPVFVMGHSMGGGLVATLASTPKYQELVSRLGGILLEAPFIG  147
             + D+  F++   E  P +P+F++GHSMGG + A  A   +Y + V    G++L AP + 
Sbjct  58   YVDDLDTFVDKIREEHPGLPLFLLGHSMGGLIAALYA--LRYPDKVD---GLILSAPALK  112

Query  148  LDPKQKPSIITVFLGRLAGRLLPRFQIVQPIKVETVVRDPVVQKTLKEDPLNHATGTLEM  207
            + P      I   L +L G+L PR ++   +  +++ RDP V      DPL H   +   
Sbjct  113  IKPY-LAPPILKLLAKLLGKLFPRLRVPNNLLPDSLSRDPEVVAAYAADPLVHGGISART  171

Query  208  FAHMLGRAADLTS--GKLVLNDGVKSVYVAHGTADQVTSYDASKHWFDAQTGKVADRQFK  265
               +L     L      + +      + + HG AD+V     S+ +++       D+  K
Sbjct  172  LYELLDAGERLLRRAAAITV-----PLLLLHGGADRVVDPAGSREFYERA--GSTDKTLK  224

Query  266  SYEGWSHLLHADL  278
             Y G  H L  + 
Sbjct  225  LYPGLYHELLNEP  237


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 64.1 bits (156),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 89/258 (34%), Gaps = 31/258 (12%)

Query  34   LIHFHGFSDHINNTYDLFPSLARRGIFCTGIDQRGWGRSAQTKADRGNTGPTAAILADMA  93
            ++  HG     +    L P+LAR G     +D RG+G+S  ++    +   T  +  D+ 
Sbjct  3    VLLLHGLPGSSDLWRKLAPALARDGFRVIALDLRGFGKS--SRPKAQDDYRTDDLAEDLE  60

Query  94   AFIEAQFEVPPDVPVFVMGHSMGGGLVATLASTPKYQELVSRLGGILLEAP---------  144
              +EA         V ++GHSMGG +    A+  KY + V  L  +LL A          
Sbjct  61   YILEAL----GLEKVNLVGHSMGGLIALAYAA--KYPDRVKAL--VLLGALDPPHELDEA  112

Query  145  ---FIGLDPKQKPSIITVFLGRLAGRLLPRFQ--IVQPIKVETVVRDPVVQKTLKEDPLN  199
                + L P      +  F     GRL+ +    ++  +++   +   + ++    D   
Sbjct  113  DRFILALFPGFFDGFVADFAPNPLGRLVAKLLALLLLRLRLLKALPL-LNKRFPSGDYAL  171

Query  200  HATGTLEMFAHMLGRAADLTSGKLVLNDGVKSVYVAHGTADQVTSYDASKHWFDAQTGKV  259
              +        +   + +L +    L    +   +  G  D +    A +          
Sbjct  172  AKSLVTGALLFIETWSTELRAKF--LGRLDEPTLIIWGDQDPLVPPQALEKL----AQLF  225

Query  260  ADRQFKSYEGWSHLLHAD  277
             + +        H    +
Sbjct  226  PNARLVVIPDAGHFAFLE  243



Lambda      K        H        a         alpha
   0.321    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00027539

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463473 pfam12146, Hydrolase_4, Serine aminopeptidase, S33. Th...  153     4e-46
CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  64.1    1e-12


>CDD:463473 pfam12146, Hydrolase_4, Serine aminopeptidase, S33.  This domain 
is found in bacteria and eukaryotes and is approximately 
110 amino acids in length. It is found in association with 
pfam00561. The majority of the members in this family carry 
the exopeptidase active-site residues of Ser-122, Asp-239 and 
His-269 as in UniProtKB:Q7ZWC2.
Length=238

 Score = 153 bits (390),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 109/253 (43%), Gaps = 18/253 (7%)

Query  28   TPPVAKLIHFHGFSDHINNTYDLFPSLARRGIFCTGIDQRGWGRSAQTKADRGNTGPTAA  87
              P A ++  HG  +H      L  +LA +G      D RG GRS      RG+      
Sbjct  1    GEPRAVVVLVHGLGEHSGRYAHLADALAAQGFAVYAYDHRGHGRSDGK---RGHVPSFDD  57

Query  88   ILADMAAFIEAQFEVPPDVPVFVMGHSMGGGLVATLASTPKYQELVSRLGGILLEAPFIG  147
             + D+  F++   E  P +P+F++GHSMGG + A  A   +Y + V    G++L AP + 
Sbjct  58   YVDDLDTFVDKIREEHPGLPLFLLGHSMGGLIAALYA--LRYPDKVD---GLILSAPALK  112

Query  148  LDPKQKPSIITVFLGRLAGRLLPRFQIVQPIKVETVVRDPVVQKTLKEDPLNHATGTLEM  207
            + P      I   L +L G+L PR ++   +  +++ RDP V      DPL H   +   
Sbjct  113  IKPY-LAPPILKLLAKLLGKLFPRLRVPNNLLPDSLSRDPEVVAAYAADPLVHGGISART  171

Query  208  FAHMLGRAADLTS--GKLVLNDGVKSVYVAHGTADQVTSYDASKHWFDAQTGKVADRQFK  265
               +L     L      + +      + + HG AD+V     S+ +++       D+  K
Sbjct  172  LYELLDAGERLLRRAAAITV-----PLLLLHGGADRVVDPAGSREFYERA--GSTDKTLK  224

Query  266  SYEGWSHLLHADL  278
             Y G  H L  + 
Sbjct  225  LYPGLYHELLNEP  237


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 64.1 bits (156),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 89/258 (34%), Gaps = 31/258 (12%)

Query  34   LIHFHGFSDHINNTYDLFPSLARRGIFCTGIDQRGWGRSAQTKADRGNTGPTAAILADMA  93
            ++  HG     +    L P+LAR G     +D RG+G+S  ++    +   T  +  D+ 
Sbjct  3    VLLLHGLPGSSDLWRKLAPALARDGFRVIALDLRGFGKS--SRPKAQDDYRTDDLAEDLE  60

Query  94   AFIEAQFEVPPDVPVFVMGHSMGGGLVATLASTPKYQELVSRLGGILLEAP---------  144
              +EA         V ++GHSMGG +    A+  KY + V  L  +LL A          
Sbjct  61   YILEAL----GLEKVNLVGHSMGGLIALAYAA--KYPDRVKAL--VLLGALDPPHELDEA  112

Query  145  ---FIGLDPKQKPSIITVFLGRLAGRLLPRFQ--IVQPIKVETVVRDPVVQKTLKEDPLN  199
                + L P      +  F     GRL+ +    ++  +++   +   + ++    D   
Sbjct  113  DRFILALFPGFFDGFVADFAPNPLGRLVAKLLALLLLRLRLLKALPL-LNKRFPSGDYAL  171

Query  200  HATGTLEMFAHMLGRAADLTSGKLVLNDGVKSVYVAHGTADQVTSYDASKHWFDAQTGKV  259
              +        +   + +L +    L    +   +  G  D +    A +          
Sbjct  172  AKSLVTGALLFIETWSTELRAKF--LGRLDEPTLIIWGDQDPLVPPQALEKL----AQLF  225

Query  260  ADRQFKSYEGWSHLLHAD  277
             + +        H    +
Sbjct  226  PNARLVVIPDAGHFAFLE  243



Lambda      K        H        a         alpha
   0.321    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00023231

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463473 pfam12146, Hydrolase_4, Serine aminopeptidase, S33. Th...  153     4e-46
CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  64.1    1e-12


>CDD:463473 pfam12146, Hydrolase_4, Serine aminopeptidase, S33.  This domain 
is found in bacteria and eukaryotes and is approximately 
110 amino acids in length. It is found in association with 
pfam00561. The majority of the members in this family carry 
the exopeptidase active-site residues of Ser-122, Asp-239 and 
His-269 as in UniProtKB:Q7ZWC2.
Length=238

 Score = 153 bits (390),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 109/253 (43%), Gaps = 18/253 (7%)

Query  28   TPPVAKLIHFHGFSDHINNTYDLFPSLARRGIFCTGIDQRGWGRSAQTKADRGNTGPTAA  87
              P A ++  HG  +H      L  +LA +G      D RG GRS      RG+      
Sbjct  1    GEPRAVVVLVHGLGEHSGRYAHLADALAAQGFAVYAYDHRGHGRSDGK---RGHVPSFDD  57

Query  88   ILADMAAFIEAQFEVPPDVPVFVMGHSMGGGLVATLASTPKYQELVSRLGGILLEAPFIG  147
             + D+  F++   E  P +P+F++GHSMGG + A  A   +Y + V    G++L AP + 
Sbjct  58   YVDDLDTFVDKIREEHPGLPLFLLGHSMGGLIAALYA--LRYPDKVD---GLILSAPALK  112

Query  148  LDPKQKPSIITVFLGRLAGRLLPRFQIVQPIKVETVVRDPVVQKTLKEDPLNHATGTLEM  207
            + P      I   L +L G+L PR ++   +  +++ RDP V      DPL H   +   
Sbjct  113  IKPY-LAPPILKLLAKLLGKLFPRLRVPNNLLPDSLSRDPEVVAAYAADPLVHGGISART  171

Query  208  FAHMLGRAADLTS--GKLVLNDGVKSVYVAHGTADQVTSYDASKHWFDAQTGKVADRQFK  265
               +L     L      + +      + + HG AD+V     S+ +++       D+  K
Sbjct  172  LYELLDAGERLLRRAAAITV-----PLLLLHGGADRVVDPAGSREFYERA--GSTDKTLK  224

Query  266  SYEGWSHLLHADL  278
             Y G  H L  + 
Sbjct  225  LYPGLYHELLNEP  237


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 64.1 bits (156),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 89/258 (34%), Gaps = 31/258 (12%)

Query  34   LIHFHGFSDHINNTYDLFPSLARRGIFCTGIDQRGWGRSAQTKADRGNTGPTAAILADMA  93
            ++  HG     +    L P+LAR G     +D RG+G+S  ++    +   T  +  D+ 
Sbjct  3    VLLLHGLPGSSDLWRKLAPALARDGFRVIALDLRGFGKS--SRPKAQDDYRTDDLAEDLE  60

Query  94   AFIEAQFEVPPDVPVFVMGHSMGGGLVATLASTPKYQELVSRLGGILLEAP---------  144
              +EA         V ++GHSMGG +    A+  KY + V  L  +LL A          
Sbjct  61   YILEAL----GLEKVNLVGHSMGGLIALAYAA--KYPDRVKAL--VLLGALDPPHELDEA  112

Query  145  ---FIGLDPKQKPSIITVFLGRLAGRLLPRFQ--IVQPIKVETVVRDPVVQKTLKEDPLN  199
                + L P      +  F     GRL+ +    ++  +++   +   + ++    D   
Sbjct  113  DRFILALFPGFFDGFVADFAPNPLGRLVAKLLALLLLRLRLLKALPL-LNKRFPSGDYAL  171

Query  200  HATGTLEMFAHMLGRAADLTSGKLVLNDGVKSVYVAHGTADQVTSYDASKHWFDAQTGKV  259
              +        +   + +L +    L    +   +  G  D +    A +          
Sbjct  172  AKSLVTGALLFIETWSTELRAKF--LGRLDEPTLIIWGDQDPLVPPQALEKL----AQLF  225

Query  260  ADRQFKSYEGWSHLLHAD  277
             + +        H    +
Sbjct  226  PNARLVVIPDAGHFAFLE  243



Lambda      K        H        a         alpha
   0.321    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00023232

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00023233

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425589 pfam00296, Bac_luciferase, Luciferase-like monooxygenase   159     1e-45


>CDD:425589 pfam00296, Bac_luciferase, Luciferase-like monooxygenase.  
Length=313

 Score = 159 bits (405),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 90/366 (25%), Positives = 137/366 (37%), Gaps = 86/366 (23%)

Query  39   SIKHWIALAQKLEAAKFHAIFFADVLGGYDVYKGPANLEPTIPAGAQFPINDPLYSVSAM  98
            S+++ + LA+  E   F  ++ A+  GG                       DP   ++A+
Sbjct  21   SLRYLVELARAAEELGFDGVWLAEHHGGPGGP-------------------DPFVVLAAL  61

Query  99   AAATESIGFGITASTTYD-APYALARRFSTVDHLSNGRVGWNIVTSYLDSAARNFGLNTQ  157
            AAAT  I  G          P  LA + +T+DHLS GR    + T       R FG    
Sbjct  62   AAATSRIRLGTAVVPLPTRHPAVLAEQAATLDHLSGGRFDLGLGTGGPAVEFRRFG----  117

Query  158  VEHDERYRIADEYLHVTYKLWEGSWRDGAVNRKDGVAGYADPKAVRQVHHRGKYFNVPGP  217
            V+HDERY    E+L V  +LW G                        V   G++F + G 
Sbjct  118  VDHDERYARLREFLEVLRRLWRG----------------------EPVDFEGEFFTLDGA  155

Query  218  HLCEPSPQRTPFLLQAGTSSAGKAFAAQHAEAIFLNGQKP-ELVRPSVDSIRAQAKELGR  276
             L     Q  P +  A +S A    AA+HA+ + L G  P       ++ +RA A E GR
Sbjct  156  FLLPRPVQGIP-VWVAASSPAMLELAARHADGLLLWGFAPPAAAAELIERVRAGAAEAGR  214

Query  277  DPASIKIIAGLLVIVAETDEAAQAKFDELASYGDPEGALALFGGW------SGYDLSKYE  330
            DPA I++ A L VIVA+T+E A+A+   L +        +   G        G +    +
Sbjct  215  DPADIRVGASLTVIVADTEEEARAEARALIAGLPFYRMDSEGAGRLAEAREIGEEYDAGD  274

Query  331  DDQDFRFVEQPAIRSMVNHWASTVPGTDGRKWDKKTIAEYLRLGGNGAKVIGSAQTVADE  390
                   V    +R+                                  ++G+ + VA+ 
Sbjct  275  WAGAADAVPDELVRAFA--------------------------------LVGTPEQVAER  302

Query  391  LERWVE  396
            L  + E
Sbjct  303  LAAYAE  308



Lambda      K        H        a         alpha
   0.317    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598144560


Query= TCONS_00023234

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00023235

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00027540

Length=388


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00027541

Length=378


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00027542

Length=378


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00023238

Length=392


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00023237

Length=531


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 666189040


Query= TCONS_00023239

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425964 pfam00962, A_deaminase, Adenosine/AMP deaminase            66.7    6e-14


>CDD:425964 pfam00962, A_deaminase, Adenosine/AMP deaminase.  
Length=330

 Score = 66.7 bits (163),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 38/119 (32%), Positives = 57/119 (48%), Gaps = 9/119 (8%)

Query  56   HAGETLGDGNSTDYNLV-DAILF-NSRRIGHGFSLYKHPTLIDEVIEKAVMVEVCPISNE  113
            HAGE  G         V +A+    + RIGHG    + P L+D + ++ + +E+CP SN 
Sbjct  194  HAGEAGGP------QSVWEALDDLGAERIGHGVRSAEDPRLLDRLADRQIPLEICPTSNV  247

Query  114  VLRLATDILHHPLPAMIAHGVPTAISNDDPAILGQDIAGLSYDFYQAIQGFDNIGLAGL  172
                   +  HPL   +  GVP +++ DDP + G D+    Y   +   GFD   LA L
Sbjct  248  QTGAVASLAEHPLKTFLRAGVPVSLNTDDPLMFGSDLL-DEYQVAKRAPGFDEEELARL  305



Lambda      K        H        a         alpha
   0.323    0.142    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0718    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00023240

Length=345


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00023241

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425964 pfam00962, A_deaminase, Adenosine/AMP deaminase            74.0    6e-15


>CDD:425964 pfam00962, A_deaminase, Adenosine/AMP deaminase.  
Length=330

 Score = 74.0 bits (182),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 120/299 (40%), Gaps = 44/299 (15%)

Query  195  WRRFQACFGPA-DTMISYEPIVRTFYQKLFEGLADDGINWVEIRSGGSSGKLVHTGQEDI  253
             + F   +      + S E I R  ++   E +A DG+ + E+R                
Sbjct  50   LQDFLDKYDIGVAVLRSPEDIRRLAFE-YAEDVAKDGVVYAEVR---------------Y  93

Query  254  DPNLDVWWNVMIEEIEK--FQATEKGKNFWG--ARVIWSDTRSKNREKITQSMKIALERK  309
            DP       +  + +      A +  +  +G   R+I        R +  +  +   E  
Sbjct  94   DPQSHASRGLSPDTVVDAVLDAVDAAEREFGITVRLI----VCAMRHEHPECSREIAELA  149

Query  310  QRF-PELFSGYDLVAQEDLGRPLSDLAPELIWFREQTEY-LNLTIPFFFHAGETLGDGNS  367
             R+  +    + L A ++ G P S     +  F    +  L+LT+    HAGE  G    
Sbjct  150  PRYRDQGIVAFGL-AGDEKGFPPSLFRDHVEAFARARDAGLHLTV----HAGEAGGP---  201

Query  368  TDYNLV-DAILF-NSRRIGHGFSLYKHPTLIDEVIEKAVMVEVCPISNEVLRLATDILHH  425
                 V +A+    + RIGHG    + P L+D + ++ + +E+CP SN        +  H
Sbjct  202  ---QSVWEALDDLGAERIGHGVRSAEDPRLLDRLADRQIPLEICPTSNVQTGAVASLAEH  258

Query  426  PLPAMIAHGVPTAISNDDPAILGQDIAGLSYDFYQAIQGFDNIGLAGLGALAQNSLRWS  484
            PL   +  GVP +++ DDP + G D+    Y   +   GFD      L  LA+N+++ S
Sbjct  259  PLKTFLRAGVPVSLNTDDPLMFGSDLL-DEYQVAKRAPGFDE---EELARLAKNAVKGS  313



Lambda      K        H        a         alpha
   0.320    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00023242

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463715 pfam12804, NTP_transf_3, MobA-like NTP transferase dom...  84.6    1e-21


>CDD:463715 pfam12804, NTP_transf_3, MobA-like NTP transferase domain.  This 
family includes the MobA protein (Molybdopterin-guanine 
dinucleotide biosynthesis protein A). The family also includes 
a wide range of other NTP transferase domain.
Length=159

 Score = 84.6 bits (210),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 67/180 (37%), Gaps = 38/180 (21%)

Query  7    LLLAGGHSSRMGTRKELLRVAGDVPLFVHLLIILHEACPESEVVFLSLRDHNSLKAIEND  66
            ++LAGG SSRMG  K LL + G  PL   +L  L  A  E   V +   D   L A+   
Sbjct  2    VILAGGRSSRMGGDKALLPLGG-KPLLERVLERLRPAGDE---VVVVANDEEVLAALA--  55

Query  67   RHITAVPDNRLILTNGTTTFPVHVVYDGPGVPSEHDSAGIGPGAGLLAA-HHQDQSAHWL  125
                                 V VV D           G GP AGLLAA      +   L
Sbjct  56   ------------------GLGVPVVPD--------PDPGQGPLAGLLAALRAAPGADAVL  89

Query  126  VVACDYPFISTAALSQLRREWT---APVTCFENRDCFCEPLLGIWSPEALRALRQNIQDG  182
            V+ACD PF++   L +L        A +           PLL  +    L AL   + D 
Sbjct  90   VLACDMPFLTPELLRRLLAAAEESGADIVVPVYDGGRGHPLL--YRRRLLPALEALLGDR  147



Lambda      K        H        a         alpha
   0.322    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00023243

Length=587
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425964 pfam00962, A_deaminase, Adenosine/AMP deaminase            73.6    1e-14


>CDD:425964 pfam00962, A_deaminase, Adenosine/AMP deaminase.  
Length=330

 Score = 73.6 bits (181),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 120/299 (40%), Gaps = 44/299 (15%)

Query  238  WRRFQACFGPA-DTMISYEPIVRTFYQKLFEGLADDGINWVEIRSGGSSGKLVHTGQEDI  296
             + F   +      + S E I R  ++   E +A DG+ + E+R                
Sbjct  50   LQDFLDKYDIGVAVLRSPEDIRRLAFE-YAEDVAKDGVVYAEVR---------------Y  93

Query  297  DPNLDVWWNVMIEEIEK--FQATEKGKNFWG--ARVIWSDTRSKNREKITQSMKIALERK  352
            DP       +  + +      A +  +  +G   R+I        R +  +  +   E  
Sbjct  94   DPQSHASRGLSPDTVVDAVLDAVDAAEREFGITVRLI----VCAMRHEHPECSREIAELA  149

Query  353  QRF-PELFSGYDLVAQEDLGRPLSDLAPELIWFREQTEY-LNLTIPFFFHAGETLGDGNS  410
             R+  +    + L A ++ G P S     +  F    +  L+LT+    HAGE  G    
Sbjct  150  PRYRDQGIVAFGL-AGDEKGFPPSLFRDHVEAFARARDAGLHLTV----HAGEAGGP---  201

Query  411  TDYNLV-DAILF-NSRRIGHGFSLYKHPTLIDEVIEKAVMVEVCPISNEVLRLATDILHH  468
                 V +A+    + RIGHG    + P L+D + ++ + +E+CP SN        +  H
Sbjct  202  ---QSVWEALDDLGAERIGHGVRSAEDPRLLDRLADRQIPLEICPTSNVQTGAVASLAEH  258

Query  469  PLPAMIAHGVPTAISNDDPAILGQDIAGLSYDFYQAIQGFDNIGLAGLGALAQNSLRWS  527
            PL   +  GVP +++ DDP + G D+    Y   +   GFD      L  LA+N+++ S
Sbjct  259  PLKTFLRAGVPVSLNTDDPLMFGSDLL-DEYQVAKRAPGFDE---EELARLAKNAVKGS  313



Lambda      K        H        a         alpha
   0.320    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 739741860


Query= TCONS_00023244

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425964 pfam00962, A_deaminase, Adenosine/AMP deaminase            66.7    6e-14


>CDD:425964 pfam00962, A_deaminase, Adenosine/AMP deaminase.  
Length=330

 Score = 66.7 bits (163),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 38/119 (32%), Positives = 57/119 (48%), Gaps = 9/119 (8%)

Query  56   HAGETLGDGNSTDYNLV-DAILF-NSRRIGHGFSLYKHPTLIDEVIEKAVMVEVCPISNE  113
            HAGE  G         V +A+    + RIGHG    + P L+D + ++ + +E+CP SN 
Sbjct  194  HAGEAGGP------QSVWEALDDLGAERIGHGVRSAEDPRLLDRLADRQIPLEICPTSNV  247

Query  114  VLRLATDILHHPLPAMIAHGVPTAISNDDPAILGQDIAGLSYDFYQAIQGFDNIGLAGL  172
                   +  HPL   +  GVP +++ DDP + G D+    Y   +   GFD   LA L
Sbjct  248  QTGAVASLAEHPLKTFLRAGVPVSLNTDDPLMFGSDLL-DEYQVAKRAPGFDEEELARL  305



Lambda      K        H        a         alpha
   0.323    0.142    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00023245

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425964 pfam00962, A_deaminase, Adenosine/AMP deaminase            71.3    1e-14


>CDD:425964 pfam00962, A_deaminase, Adenosine/AMP deaminase.  
Length=330

 Score = 71.3 bits (175),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 114/288 (40%), Gaps = 41/288 (14%)

Query  26   WRRFQACFGPA-DTMISYEPIVRTFYQKLFEGLADDGINWVEIRSGGSSGKLVHTGQEDI  84
             + F   +      + S E I R  ++   E +A DG+ + E+R                
Sbjct  50   LQDFLDKYDIGVAVLRSPEDIRRLAFE-YAEDVAKDGVVYAEVR---------------Y  93

Query  85   DPNLDVWWNVMIEEIEK--FQATEKGKNFWG--ARVIWSDTRSKNREKITQSMKIALERK  140
            DP       +  + +      A +  +  +G   R+I        R +  +  +   E  
Sbjct  94   DPQSHASRGLSPDTVVDAVLDAVDAAEREFGITVRLI----VCAMRHEHPECSREIAELA  149

Query  141  QRF-PELFSGYDLVAQEDLGRPLSDLAPELIWFREQTEY-LNLTIPFFFHAGETLGDGNS  198
             R+  +    + L A ++ G P S     +  F    +  L+LT+    HAGE  G    
Sbjct  150  PRYRDQGIVAFGL-AGDEKGFPPSLFRDHVEAFARARDAGLHLTV----HAGEAGGP---  201

Query  199  TDYNLV-DAILF-NSRRIGHGFSLYKHPTLIDEVIEKAVMVEVCPISNEVLRLATDILHH  256
                 V +A+    + RIGHG    + P L+D + ++ + +E+CP SN        +  H
Sbjct  202  ---QSVWEALDDLGAERIGHGVRSAEDPRLLDRLADRQIPLEICPTSNVQTGAVASLAEH  258

Query  257  PLPAMIAHGVPTAISNDDPAILGQDIAGLSYDFYQAIQGFDNIGLAGL  304
            PL   +  GVP +++ DDP + G D+    Y   +   GFD   LA L
Sbjct  259  PLKTFLRAGVPVSLNTDDPLMFGSDLL-DEYQVAKRAPGFDEEELARL  305



Lambda      K        H        a         alpha
   0.321    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00023246

Length=345


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00027543

Length=721
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395308 pfam00384, Molybdopterin, Molybdopterin oxidoreductase     145     8e-39
CDD:426328 pfam01568, Molydop_binding, Molydopterin dinucleotide ...  106     6e-28


>CDD:395308 pfam00384, Molybdopterin, Molybdopterin oxidoreductase.  
Length=359

 Score = 145 bits (368),  Expect = 8e-39, Method: Composition-based stats.
 Identities = 86/335 (26%), Positives = 128/335 (38%), Gaps = 78/335 (23%)

Query  13   SYTDIDFTDCIFMVGHNMANTQTVLWSRVLDRLAGPDPPKLVVVDPRESETARHATVHLA  72
            S  DI+  D I ++G N      +L +R+          K++V+ PR   T  +A  HL 
Sbjct  102  SIADIENADLILLIGTNPREEAPILNARIRKAALKGKA-KVIVIGPRLDLT--YADEHLG  158

Query  73   PKGGTNVALLNGLQHLLFENGWLNEEWVEQHTVGRQELEKTVAKYTPEYVENITGVPADM  132
             K GT++AL     H+  +    ++                                 D 
Sbjct  159  IKPGTDLALALAGAHVFIKELKKDK---------------------------------DF  185

Query  133  LKDAAEIIGTSGSLLSTALQGVYQSNQATAAACQINNINLLLGHIGKPGSGILQMNGQPT  192
                  I+G           GV Q     A    I N+  L G+IG+PG           
Sbjct  186  APKPIIIVG----------AGVLQRQDGEAIFRAIANLADLTGNIGRPG-----------  224

Query  193  AQNNRETGCNGEYPGFRNFQNEKHMKEIADVWKIDLVQTPHWNQPTHIQNMLNYIEDGSI  252
                      G + G    Q        + V  +DL   P          M+N I+ G I
Sbjct  225  ----------GGWNGLNILQGAA-----SPVGALDLGLVP----GIKSVEMINAIKKGGI  265

Query  253  QMFWVSGTNPLVSLPHLYRVRELLTKPELFLVVQDIFV-TETAAIADVVLPAAQWGEKTG  311
            ++ ++ G NP V+     RV + L K +LF VV D     +TA  ADV+LPAA + EK G
Sbjct  266  KVLYLLGNNPFVTHADENRVVKALQKLDLF-VVYDGHHGDKTAKYADVILPAAAYTEKNG  324

Query  312  CFTNVDRTMHLSLKAVDPPGEARADLDIWLDYAKR  346
             + N +  +  + +AV PPGEAR D  I    ++ 
Sbjct  325  TYVNTEGRVQSTKQAVPPPGEAREDWKILRALSEV  359


>CDD:426328 pfam01568, Molydop_binding, Molydopterin dinucleotide binding 
domain.  This domain is found in various molybdopterin - containing 
oxidoreductases and tungsten formylmethanofuran dehydrogenase 
subunit d (FwdD) and molybdenum formylmethanofuran 
dehydrogenase subunit (FmdD); where the domain constitutes 
almost the entire subunit. The formylmethanofuran dehydrogenase 
catalyzes the first step in methane formation from CO2 
in methanogenic archaea and has a molybdopterin dinucleotide 
cofactor. This domain corresponds to the C-terminal domain 
IV in dimethyl sulfoxide (DMSO)reductase which interacts with 
the 2-amino pyrimidone ring of both molybdopterin guanine 
dinucleotide molecules.
Length=110

 Score = 106 bits (267),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 45/134 (34%), Positives = 66/134 (49%), Gaps = 25/134 (19%)

Query  470  LLLSTGRNVFHFHTRTKTGRARRLQQADQEPIVQISVEDAQALHVTEGEMVVVRSRRGSV  529
            L L TGR +  +H++T+T R  RL    +  +V+I  EDA AL + +G++V V SRRGSV
Sbjct  1    LYLITGRVLGQYHSQTRTRRVLRLA-KPEPEVVEIHPEDAAALGIKDGDLVEVTSRRGSV  59

Query  530  ELPVRIG-GINDGHVFIPFHFGYWDATDGRARAANELTIGRYNVEKTDWLEYRILTNAEQ  588
             +  ++   +  G VF+PF + Y      R   AN LT                    + 
Sbjct  60   VVRAKVTDRVRPGVVFMPFGWWYEP----RGGNANALT-------------------DDA  96

Query  589  WDPVSKQPMFKSGA  602
             DP+S  P FK+ A
Sbjct  97   TDPLSGGPEFKTCA  110



Lambda      K        H        a         alpha
   0.318    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 912380304


Query= TCONS_00023247

Length=257


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00023248

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463715 pfam12804, NTP_transf_3, MobA-like NTP transferase dom...  73.8    9e-18


>CDD:463715 pfam12804, NTP_transf_3, MobA-like NTP transferase domain.  This 
family includes the MobA protein (Molybdopterin-guanine 
dinucleotide biosynthesis protein A). The family also includes 
a wide range of other NTP transferase domain.
Length=159

 Score = 73.8 bits (182),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 56/143 (39%), Gaps = 33/143 (23%)

Query  7    LLLAGGHSSRMGTRKELLRVAGDVPLFVHLLIILHEACPESEVVFLSLRDHNSLKAIEND  66
            ++LAGG SSRMG  K LL + G  PL   +L  L  A  E   V +   D   L A+   
Sbjct  2    VILAGGRSSRMGGDKALLPLGG-KPLLERVLERLRPAGDE---VVVVANDEEVLAALA--  55

Query  67   RHITAVPDNRLILTNGTTTFPVHVVYDGPGVPSEHDSAGIGPGAGLLAA-HHQDQSAHWL  125
                                 V VV D           G GP AGLLAA      +   L
Sbjct  56   ------------------GLGVPVVPD--------PDPGQGPLAGLLAALRAAPGADAVL  89

Query  126  VVACDYPFISTAALSQLRREWTA  148
            V+ACD PF++   L +L      
Sbjct  90   VLACDMPFLTPELLRRLLAAAEE  112



Lambda      K        H        a         alpha
   0.323    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00023249

Length=890
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395308 pfam00384, Molybdopterin, Molybdopterin oxidoreductase     191     2e-54
CDD:426328 pfam01568, Molydop_binding, Molydopterin dinucleotide ...  118     5e-32


>CDD:395308 pfam00384, Molybdopterin, Molybdopterin oxidoreductase.  
Length=359

 Score = 191 bits (486),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 122/441 (28%), Positives = 175/441 (40%), Gaps = 93/441 (21%)

Query  6    RPKHPLIRRN-GKLEPASWDEAMSLIVHQTKDVQKRLTNHGIGFYT-TGQLF-LEEYYVL  62
            R K+P++RR  GK    SWDEA+ LI  + K + K+     I     +G L  +E  Y L
Sbjct  1    RLKYPMVRRGDGKFVRVSWDEALDLIAKKLKRIIKKYGPDAIAINGGSGGLTDVESLYAL  60

Query  63   A--MIGKAGLNTLHMDGNTRLCTATAAASMRESFGSDGQPG-----SYTDIDFTDCIFMV  115
               +      N    D N  LCTA AAA     FGSD +       S  DI+  D I ++
Sbjct  61   KKLLNRLGSKNGNTEDHNGDLCTAAAAA-----FGSDLRSNYLFNSSIADIENADLILLI  115

Query  116  GHNMANTQTVLWSRVLDRLAGPDPPKLVVVDPRESETARHATVHLAPKGGTNVALLNGLQ  175
            G N      +L +R+          K++V+ PR   T  +A  HL  K GT++AL     
Sbjct  116  GTNPREEAPILNARIRKAALKGK-AKVIVIGPRLDLT--YADEHLGIKPGTDLALALAGA  172

Query  176  HLLFENGWLNEEWVEQHTVGRQELEKTVAKYTPEYVENITGVPADMLKDAAEIIGTSGSL  235
            H+  +    ++                                 D       I+G     
Sbjct  173  HVFIKELKKDK---------------------------------DFAPKPIIIVG-----  194

Query  236  LSTALQGVYQSNQATAAACQINNINLLLGHIGKPGSGILQMNGQPTAQNNRETGCNGEYP  295
                  GV Q     A    I N+  L G+IG+PG                     G + 
Sbjct  195  -----AGVLQRQDGEAIFRAIANLADLTGNIGRPG---------------------GGWN  228

Query  296  GFRNFQNEKHMKEIADVWKIDLVQTPHWNQPTHIQNMLNYIEDGSIQMFWVSGTNPLVSL  355
            G    Q        + V  +DL   P          M+N I+ G I++ ++ G NP V+ 
Sbjct  229  GLNILQGAA-----SPVGALDLGLVP----GIKSVEMINAIKKGGIKVLYLLGNNPFVTH  279

Query  356  PHLYRVRELLTKPELFLVVQDIFV-TETAAIADVVLPAAQWGEKTGCFTNVDRTMHLSLK  414
                RV + L K +LF VV D     +TA  ADV+LPAA + EK G + N +  +  + +
Sbjct  280  ADENRVVKALQKLDLF-VVYDGHHGDKTAKYADVILPAAAYTEKNGTYVNTEGRVQSTKQ  338

Query  415  AVDPPGEARADLDIWLDYAKR  435
            AV PPGEAR D  I    ++ 
Sbjct  339  AVPPPGEAREDWKILRALSEV  359


>CDD:426328 pfam01568, Molydop_binding, Molydopterin dinucleotide binding 
domain.  This domain is found in various molybdopterin - containing 
oxidoreductases and tungsten formylmethanofuran dehydrogenase 
subunit d (FwdD) and molybdenum formylmethanofuran 
dehydrogenase subunit (FmdD); where the domain constitutes 
almost the entire subunit. The formylmethanofuran dehydrogenase 
catalyzes the first step in methane formation from CO2 
in methanogenic archaea and has a molybdopterin dinucleotide 
cofactor. This domain corresponds to the C-terminal domain 
IV in dimethyl sulfoxide (DMSO)reductase which interacts with 
the 2-amino pyrimidone ring of both molybdopterin guanine 
dinucleotide molecules.
Length=110

 Score = 118 bits (298),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 6/115 (5%)

Query  559  LLLSTGRNVFHFHTRTKTGRARRLQQADQEPIVQISVEDAQALHVTEGEMVVVRSRRGSV  618
            L L TGR +  +H++T+T R  RL    +  +V+I  EDA AL + +G++V V SRRGSV
Sbjct  1    LYLITGRVLGQYHSQTRTRRVLRLA-KPEPEVVEIHPEDAAALGIKDGDLVEVTSRRGSV  59

Query  619  ELPVRIG-GINDGHVFIPFHFGYWDATDGRARAANELTIEQWDPVSKQPMFKSGA  672
             +  ++   +  G VF+PF + Y      R   AN LT +  DP+S  P FK+ A
Sbjct  60   VVRAKVTDRVRPGVVFMPFGWWYEP----RGGNANALTDDATDPLSGGPEFKTCA  110



Lambda      K        H        a         alpha
   0.318    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1141233630


Query= TCONS_00023250

Length=307


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00023251

Length=307


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00023252

Length=307


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00023253

Length=359
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425613 pfam00331, Glyco_hydro_10, Glycosyl hydrolase family 10    325     4e-111


>CDD:425613 pfam00331, Glyco_hydro_10, Glycosyl hydrolase family 10.  
Length=310

 Score = 325 bits (834),  Expect = 4e-111, Method: Composition-based stats.
 Identities = 130/324 (40%), Positives = 178/324 (55%), Gaps = 16/324 (5%)

Query  28   LDKLARRNGMLWFGTAADIPGTSETTDKSYLSILRKKFGEMTPANALKFMYTEPEQNVFN  87
            L   A+  G   FGTA          +  Y +IL+ +F ++TP N +K+   EP +  F 
Sbjct  1    LKDAAKAKGKY-FGTAVSAGEL--LGNSQYTAILKAEFNQVTPENEMKWDALEPSRGNFT  57

Query  88   FTQGDYFMDLADHYGHAVRCHNLVWASQVSDWVTSRNWTATELKEVMKNHIFKTVQHFGK  147
            F   D  ++ A   G AVR H LVW SQ+ DWV + N +  +L +V++NHI   V H+  
Sbjct  58   FANADRIVNFAKQNGMAVRGHTLVWHSQLPDWVFNINGSKADLLQVLENHITTVVGHYKG  117

Query  148  RCYAWDVVNEAV--NGDGTFSSSVWYDTIGEEYFYLAFQYAQEALAQIHANQVKLYYNDY  205
            + YAWDVVNEA   +G G   SSVWY  +GE+Y  +AF+ A+EA         KLYYNDY
Sbjct  118  KIYAWDVVNEAFDDDGSGGLRSSVWYQVLGEDYIEIAFRAAREADP-----DAKLYYNDY  172

Query  206  GIENPGPKADAVLKLVAELRKRGIRIDGVGLESHFIVGETPSLADQLATKKAYIEAGLEV  265
             IE  G K DAV  LV +L+ +G+ IDG+G +SH   G  PS+++  A  + +   GLEV
Sbjct  173  NIEEDGAKRDAVYNLVKDLKAKGVPIDGIGFQSHLSAG-GPSISNIRAALQRFAALGLEV  231

Query  266  AITELDVRFSQAPFYTAEAQKQQAADYYASVASCKHAGPRCVGVVVWDFDDAYSWIPGTF  325
            AITELD+R         EA + QAA Y     +C  A P C G+ VW   D YSW+ G F
Sbjct  232  AITELDIR--GPDPSDEEALQAQAARYKEVFKACL-AVPNCTGITVWGVTDKYSWLSGFF  288

Query  326  EGQGGACLYNETLEVKPAFYAAAE  349
               G   L++   + KPA+ A  +
Sbjct  289  P--GAPLLFDSNYQPKPAYNAVVD  310



Lambda      K        H        a         alpha
   0.319    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00023254

Length=413


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00023255

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            92.1    9e-21


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 92.1 bits (229),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 73/401 (18%), Positives = 141/401 (35%), Gaps = 67/401 (17%)

Query  68   IYSSQFLFALDNTIVANVQPVIVG-HFN-SVEKLPWISVAFLIGAAGTNLIWGKVFGQFN  125
            ++ + FL AL  +++    P+++      S  ++  +   F +G A    + G++  +F 
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  126  AKWTYILSVFVFEVGSAVCGAAPNMNALIIGRAICGVSGSGMYVGLMTLLAATTTIQERP  185
             +   ++ + +F +G  +   A ++  L++ R + G+    ++   + L+A     +ER 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  186  LYVGGGGFIWGVGTVLGPIIGGAFTDSSAGWRWAFYINLCVGAVCAPVYLFLLPNKDPRP  245
              +G     +G+G  LGP++GG       GWR AF I   +  + A + L   P  + + 
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLAS-LFGWRAAFLILAILSLLAAVLLLLPRPPPESKR  179

Query  246  GVSLQERANTMDHIGGILTIGAMVTGVMAVSFGGVMYPWNSGRIIGLFCCSGALFILLGI  305
                +E                                                      
Sbjct  180  PKPAEEA-----------------------------------------------------  186

Query  306  QQVFTIYTSVAHRVVPVEFFKSRTVLILFAATAAGGTAIFVPVYMAPLYFQFTRGDSTLE  365
                         +V  +      VL L  A    G A F  +   PLY Q   G S L 
Sbjct  187  ---------RLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLY-QEVLGLSALL  236

Query  366  SGVRLLPFIILMIVAVMTNGALLSKFGLYMPWYLVGGVLVVIGAALMYTVGLTTSVAHVY  425
            +G+ L    +L  +  +  G L  + G      L   +L++    L+      +S+  + 
Sbjct  237  AGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLL  296

Query  426  GYTILIGVGVGFFAQASFSVAQATVAPELVPSAVGFISLAQ  466
               +L+G G G    A  ++       E   +A G  + A 
Sbjct  297  AL-LLLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAG  336



Lambda      K        H        a         alpha
   0.324    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00023256

Length=2353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 294     7e-89
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  103     5e-23


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 294 bits (756),  Expect = 7e-89, Method: Composition-based stats.
 Identities = 135/419 (32%), Positives = 199/419 (47%), Gaps = 37/419 (9%)

Query  1316  LQRMAASHPSRTAVEDISGARITYAGLAIKMNQLAGLLRERGLELEQIVPIMLEKSINTI  1375
             L+R AA  P +TA+E   G R+TY  L  + N+LA  LR  G+     V I+L  S   +
Sbjct  1     LERQAARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWV  60

Query  1376  VAMFGILVAGGAFLPLGPENPRERNLGILEDCGAKLVIADQ-------LNADFFKGTSYE  1428
             VA    L AG  ++PL P  P E    ILED GAK++I D        L A         
Sbjct  61    VAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKL  120

Query  1429  VIVIDAIAWDT----------IPLQRQVVPGLNPNSLAYVIYTSGSTGKPKGTLIPHSAI  1478
             V+V+D                  +     P  +P+ LAY+IYTSG+TGKPKG ++ H  +
Sbjct  121   VLVLDRDPVLKEEPLPEEAKPADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNL  180

Query  1479  VAALDGILYATTQD----NSRRIMWSLNYTFDGSF-YPLFPTLATGRTLCVAPQNT--IV  1531
             VA +  I     +        R++ +L    D      L   L  G T+ + P       
Sbjct  181   VANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDP  240

Query  1532  GNLADVITKLRVDQINLTPTMASLL------HPDDVPTLEILATGGEPVTHHMLNVWAPR  1585
               L ++I + +V  +   PT+ ++L          + +L ++ +GG P+   +   +   
Sbjct  241   AALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFREL  300

Query  1586  --IKVYTSYGPTEATICVTTR--QVTPDMNIRNVGRPFPNTTALILDPDTMEELPSGSVG  1641
                 +   YG TE T  VTT         ++ +VGRP P T   I+D +T E +P G  G
Sbjct  301   FGGALVNGYGLTETTGVVTTPLPLDEDLRSLGSVGRPLPGTEVKIVDDETGEPVPPGEPG  360

Query  1642  ELCIAGPQLARGYLNRPEATNKAFQGTADQRFYRTGDLARLLPNGEIELFGRKDDQVKI  1700
             ELC+ GP + +GYLN PE T +AF    +  +YRTGDL R   +G +E+ GRK DQ+K+
Sbjct  361   ELCVRGPGVMKGYLNDPELTAEAFD---EDGWYRTGDLGRRDEDGYLEIVGRKKDQIKL  416


 Score = 232 bits (593),  Expect = 4e-67, Method: Composition-based stats.
 Identities = 111/427 (26%), Positives = 177/427 (41%), Gaps = 61/427 (14%)

Query  283  IEEQAKARPDAAAVQYETEPPLTFSALNTRANQLARQIRPYGTK---YIAVHLRMSTDFI  339
            +E QA   PD  A++      LT+  L+ RAN+LA  +R  G      +A+ L  S +++
Sbjct  1    LERQAARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWV  60

Query  340  VALLAILKSGAAYVILDPDAPAARKSFILDDLQPGLVLVD--------------------  379
            VA LA LK+GA YV L+P  PA   ++IL+D    +++ D                    
Sbjct  61   VAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKL  120

Query  380  ---ISTAGELANEVQLGSLLSQASSHDTGDLLHVQDPSSVAYVIYTSGSTGKPKPTLLEH  436
               +     L  E                      DP  +AY+IYTSG+TGKPK  +L H
Sbjct  121  VLVLDRDPVLKEEPLPEEAKPADVPPPPPPPP---DPDDLAYIIYTSGTTGKPKGVMLTH  177

Query  437  QAVFNGLLAFPPI--------EGLRQLLFFNPAFSAAQRS-IWATLAVGGCLCLASKENL  487
            + +   +L+   +           R L              +   L  G  + L      
Sbjct  178  RNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPA  237

Query  488  TVHTAKMINTMDINSVDMTSS---------AAALISPDDVPSLRRMVLGGEMVNPAVIQR  538
                A ++  ++   V +             A       + SLR ++ GG  + P + +R
Sbjct  238  L-DPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARR  296

Query  539  WE--HRVELLSSYGLSECT----QLNWRHRLQSNVSSRLIGQPYDTTTSYILLPGTTELA  592
            +       L++ YGL+E T              ++ S  +G+P   T   I+   T E  
Sbjct  297  FRELFGGALVNGYGLTETTGVVTTPLPLDEDLRSLGS--VGRPLPGTEVKIVDDETGEPV  354

Query  593  PLLVPGELCLGGAQLARGYLHRPDETAKRFIPNPFGKGKLYRTGDMAVRHADGSVELIGR  652
            P   PGELC+ G  + +GYL+ P+ TA+ F  + +     YRTGD+  R  DG +E++GR
Sbjct  355  PPGEPGELCVRGPGVMKGYLNDPELTAEAFDEDGW-----YRTGDLGRRDEDGYLEIVGR  409

Query  653  IDFQVKI  659
               Q+K+
Sbjct  410  KKDQIKL  416


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 103 bits (258),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 135/360 (38%), Gaps = 52/360 (14%)

Query  884   IEDAFPVTPFQEAAIANTMMGGTSYIYSRSYSFE---GYSPDDVRAAFETLMKSDGWLRT  940
             ++D +P++P Q+       +   S  Y+     +      P+ +  A + L+     LRT
Sbjct  1     VQDEYPLSPAQKRMWFLEKLEPHSSAYNMPAVLKLTGELDPERLEKALQELINRHDALRT  60

Query  941   TYVPHGTS-FLQVVKKTADLPWETSDM----------DVTEYLQKQTSKGM--YPGELWW  987
              ++       +QV+ +      E  D+           +  ++Q+          G L+ 
Sbjct  61    VFIRQENGEPVQVILEERPFELEIIDISDLSESEEEEAIEAFIQRDLQSPFDLEKGPLF-  119

Query  988   TAAAL----PNNV-LVITAHHALFDFWSNEFLIQDLTSVLQG------TPRIQRRGFRPY  1036
               A L     N   L+++ HH + D  S   L++DL  + Q        P   +  ++ Y
Sbjct  120   -RAGLFRIAENRHHLLLSMHHIIVDGVSLGILLRDLADLYQQLLKGEPLPLPPKTPYKDY  178

Query  1037  VE----YLQQHDPVAMQEFWQGYLEGAVPSH--------LGSQIAPENTV----AAEVHC  1080
              E    YLQ  D      +W   LEG +P             +    + +      +   
Sbjct  179   AEWLQQYLQSEDYQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSFTLDEDTEE  238

Query  1081  DLKRTASQRRVTPGVLLYAAWAIVLGLANSTEDVVMGVTFSGRDVPLAGVLQMSGPTLMV  1140
              L++ A     T   +L AA+ ++L      +D+V+G   SGR  P   + +M G  +  
Sbjct  239   LLRKLAKAHGTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGSGR--PSPDIERMVGMFVNT  296

Query  1141  APLRVKVNKVTPLDKHLEDVQSNLWAVARNAPYGLRKILKASGQAKD-----LFDTMVNF  1195
              PLR+         + ++ VQ +L +   +  Y    ++      +D     LFD M +F
Sbjct  297   LPLRIDPKGGKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSF  356


 Score = 89.7 bits (223),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 93/428 (22%), Positives = 158/428 (37%), Gaps = 50/428 (12%)

Query  1938  VEDIYPCSPGQ--IEFFTQGEKPDRFWQLMAVRTLPDDLDFDRWIYLTTQLTKTNQILRA  1995
             V+D YP SP Q  + F  + E     + + AV  L  +LD +R      +L   +  LR 
Sbjct  1     VQDEYPLSPAQKRMWFLEKLEPHSSAYNMPAVLKLTGELDPERLEKALQELINRHDALRT  60

Query  1996  LYLQTDAENPQTLVQVVLKHPVLNLAY--RSYRTEEEKQSILEA----EWQRPFDPAK-P  2048
             ++++   +     VQV+L+     L     S  +E E++  +EA    + Q PFD  K P
Sbjct  61    VFIR---QENGEPVQVILEERPFELEIIDISDLSESEEEEAIEAFIQRDLQSPFDLEKGP  117

Query  2049  FVRYTLLEDSQGTRSLVINLHHSSYDGTLLHIFDDQFQALHQ------NQPIQQPTPFKD  2102
               R  L   ++    L++++HH   DG  L I       L+Q        P+   TP+KD
Sbjct  118   LFRAGLFRIAENRHHLLLSMHHIIVDGVSLGILLRDLADLYQQLLKGEPLPLPPKTPYKD  177

Query  2103  FITHFLR----TPKQPQLDYWTRLLQ--NHSFDFPSAVIEPKLSS----TEVAKIDASLG  2152
             +     +       Q    YW   L+        P     P   S         +D    
Sbjct  178   YAEWLQQYLQSEDYQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSFTLDEDTE  237

Query  2153  --INGLASSTGVTAPIVFQTAYSLLLAHLSGARDVIYDNLVTGRNVALDNPQLINGNCAN  2210
               +  LA + G T   V   AY LLL+  +G  D++     +GR     + + + G   N
Sbjct  238   ELLRKLAKAHGTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGSGRPSP--DIERMVGMFVN  295

Query  2211  FLPYHSYVADDIPIETLLRSTQADFWTSTENGLVSLGEIYEALGRDRSTAAAKCLFCFQP  2270
              LP             L++  Q D  ++  +     G++   L   R  +       F P
Sbjct  296   TLPLRIDPKGGKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRH---PLFDP  352

Query  2271  ---FEPVTAQQDPMRWVVMKMSKNRMTFNYAIQME-------VVKAAAKGEYL-VRFGYD  2319
                F+    Q         +   + +  + +  +E        + A+ +G  L ++  Y+
Sbjct  353   MFSFQNYLGQDS----QEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYN  408

Query  2320  ERAFSAEE  2327
                F  E 
Sbjct  409   TSLFDEET  416



Lambda      K        H        a         alpha
   0.318    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2921906048


Query= TCONS_00023257

Length=412


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 501729466


Query= TCONS_00023258

Length=414


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00023259

Length=709
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  200     3e-58


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 200 bits (510),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 116/419 (28%), Positives = 185/419 (44%), Gaps = 43/419 (10%)

Query  296  LFMHYLDRVFYIQFPFYLSRNPRGRACLFSIIRMVKPAYLATLALGERDLLSFHPQQGDV  355
            L  +YLD V  +  PF  S NP  R  L  +         A LAL      +FH Q    
Sbjct  2    LLDYYLDNVSPLLSPFPESSNP-FRKVLLPLALSNPALLHALLALS-----AFHLQSSGP  55

Query  356  AISLTQLRANGGYHDLAAQATQRLLQESHTWNRSAYMVHNIESLASILQLLFWELFAGGR  415
                 +      Y  LA +  QR L E    +R +      + LA+IL L  +E+ +G  
Sbjct  56   PDLWEREAQR--YKSLALRLLQRALAE--LSSRLSSNSKYDDVLAAILLLCSFEISSGDV  111

Query  416  GNWQVLLLEAARLIPGLLETRTPPIPRPASFDHTTSTPHIETLSPDDPCATGVLLGSFIS  475
             +W+V L  A  LI      R  P    +                        LL +F  
Sbjct  112  SDWRVHLEGAKDLI----RLRGGPSKTSSGLSSLLRF----------------LLRNFAY  151

Query  476  LDIIASASTRR-PPFLNIDHAQVLRNP----CISLESIIGCSNSVMGLIFEISSLDRWKE  530
             DI++S +T R P F + ++  +  +        L+ ++GCSNS+  LI EIS L R K 
Sbjct  152  HDILSSTTTGRGPSFPSEEYLDLFGDELELGSSGLDPLMGCSNSLFLLISEISDLAREKR  211

Query  531  ESQAIRKLSIIDLAERGRQIEERLRQELADMDTLPETSPSLLNRSKVLSVPADPDVNRLF  590
              ++  +L  ++   R +++E+RL       D L          S++L       +  L+
Sbjct  212  SLRSDNELLPLEFLSRAQELEQRLSSWEPRSDDLEIPLDGEDPLSELLL-----TLTELY  266

Query  591  ALSALIYLHVVISGAHPELPEIADAVSQVIAVFKRLWDPRLLQSVLVWPFCVAGCLAL-E  649
             L+ALIYL+  I G  P  PE+ + VS+++ +   L D  L  S L+WP  +AGC A+ +
Sbjct  267  RLAALIYLYRRILGLPPSSPEVQELVSKLLELLDLLPDSPLAISSLLWPLFIAGCEAVDD  326

Query  650  EQQNFFRALFSASEITESTVGTCFEAFRIMEKCWEARRSGPFNCDWASIMKQQGYYVLL  708
            + ++F      + E  +S +G    A  I+E+ W+ R  G  + DW  +M++ G+ +LL
Sbjct  327  DDRDFVLDRLDSLE--KSRLGNVRRAREILEEVWKRRDDGELSIDWRDVMERLGWDLLL  383



Lambda      K        H        a         alpha
   0.320    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 908470640


Query= TCONS_00023260

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  154     6e-44


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 154 bits (390),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 85/327 (26%), Positives = 145/327 (44%), Gaps = 34/327 (10%)

Query  42   CSGRYVTSTSFLVG-LNCSTIKLFAGGRGNWQVLLLEAARLIPGLLETRTPPIPRPASFD  100
                       L   L   + ++ +G   +W+V L  A  LI      R  P    +   
Sbjct  84   RLSSNSKYDDVLAAILLLCSFEISSGDVSDWRVHLEGAKDLI----RLRGGPSKTSSGLS  139

Query  101  HTTSTPHIETLSPDDPCATGVLLGSFISLDIIASASTRR-PPFLNIDHAQVLRNP----C  155
                                 LL +F   DI++S +T R P F + ++  +  +      
Sbjct  140  SLLRF----------------LLRNFAYHDILSSTTTGRGPSFPSEEYLDLFGDELELGS  183

Query  156  ISLESIIGCSNSVMGLIFEISSLDRWKEESQAIRKLSIIDLAERGRQIEERLRQELADMD  215
              L+ ++GCSNS+  LI EIS L R K   ++  +L  ++   R +++E+RL       D
Sbjct  184  SGLDPLMGCSNSLFLLISEISDLAREKRSLRSDNELLPLEFLSRAQELEQRLSSWEPRSD  243

Query  216  TLPETSPSLLNRSKVLSVPADPDVNRLFALSALIYLHVVISGAHPELPEIADAVSQVIAV  275
             L          S++L       +  L+ L+ALIYL+  I G  P  PE+ + VS+++ +
Sbjct  244  DLEIPLDGEDPLSELLL-----TLTELYRLAALIYLYRRILGLPPSSPEVQELVSKLLEL  298

Query  276  FKRLWDPRLLQSVLVWPFCVAGCLAL-EEQQNFFRALFSASEITESTVGTCFEAFRIMEK  334
               L D  L  S L+WP  +AGC A+ ++ ++F      + E  +S +G    A  I+E+
Sbjct  299  LDLLPDSPLAISSLLWPLFIAGCEAVDDDDRDFVLDRLDSLE--KSRLGNVRRAREILEE  356

Query  335  CWEARRSGPFNCDWASIMKQQGYYVLL  361
             W+ R  G  + DW  +M++ G+ +LL
Sbjct  357  VWKRRDDGELSIDWRDVMERLGWDLLL  383



Lambda      K        H        a         alpha
   0.322    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00023261

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            104     5e-25


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 104 bits (260),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 125/308 (41%), Gaps = 35/308 (11%)

Query  41   SMVTFLSPVSGSIYYPAL-QSLSQDLGVSINTIYLTITVYMIFQGFTPLLTGTLSDQNGR  99
             +  FL+ +  S+  PAL   L++DLG+S   I L +T++ +       L G LSD+ GR
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  100  RPVFVACLIVYIGVNIGLCVQDSVLILFVLRCLQSVGSNGVSVVATATIADLITRAERRK  159
            R V +  L+++    + L    S+ +L VLR LQ +G+  +   A A IAD     ER +
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  160  YMAYGSLGFTFGPAVGPVLGSVLTQFLGWRSIFAFLAIVAATLLTLILAFLPETCRAMVG  219
             +   S GF  G A+GP+LG +L    GWR+ F  LAI++     L+L   P        
Sbjct  122  ALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK---  178

Query  220  NGSVPAPWWNRSCLQWLRLSFQSGTIAEDRGTLVSPCHRPSLWDSIRITRQRSTGLLILA  279
                             R                +    P LW             L+LA
Sbjct  179  -----------------RPKPAEEARLSLIVAWKALLRDPVLW-------------LLLA  208

Query  280  STTLSSGSTAILANIPALFEDHYRFNALQVGLCYLPDAIGALSAPWTVGTLADRNFRRCC  339
                      +L  +P L+++    +AL  GL      +        +G L+DR  RR  
Sbjct  209  LLLFGFAFFGLLTYLP-LYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRR  267

Query  340  RLAGITVA  347
             L  + + 
Sbjct  268  LLLALLLL  275



Lambda      K        H        a         alpha
   0.325    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00023262

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            108     1e-26


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 108 bits (271),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 67/378 (18%), Positives = 128/378 (34%), Gaps = 37/378 (10%)

Query  58   LVVIYMLQYLDKNSLNFASVYGLKQGTHLHGQDYAWLGSIFYFGYLIAQYPAGYTLQRLP  117
            L +   L  L ++ L  A    L +   +   +   L ++F  GY +AQ  AG    R  
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  118  MGKVLSITTIMWGALLMTTPACHNFAGIAANRFLLGLLEAVVNPGFVLLMSTWYTAKEQP  177
              +VL I  +++   L+      +   +   R L GL    + P  + L++ W+  +E+ 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  178  LRLEAYYCTNGIATMFGGKEQDRLIGYAVGHITSGLPRWMYVFIIFGAVSVATGIISLLL  237
              L       G+    G      L+G  +  +      W   F+I   +S+   ++    
Sbjct  121  RALGLVSAGFGLGAALGP-----LLGGLLASLFG----WRAAFLILAILSLLAAVLL---  168

Query  238  LPDLPSTARFLNPRERAIAVDRVSRNQQGVKNHHFKWEQVWQAARDPKTWLLFVMAVGAQ  297
                        P E              +          W+A        L +  +   
Sbjct  169  -------LLPRPPPESKRPKPAEEARLSLIV--------AWKALLRDPVLWLLLALLLFG  213

Query  298  VPNSALTSFTSIIVGSFGFDTLGTQYLQIPGGAVQFLALLVGGWIATKFSNRFHSRSACM  357
                 L ++  +     G   L    L   GG +  +  L+ G ++ +   R       +
Sbjct  214  FAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRR-----RL  268

Query  358  IVANSICIIGSGLLVGLPDTNKWGRLVALWLCYFQGLGFSMSLTMVSSNIAGYTKKQVTG  417
            ++A  + I+ +  L+ L  T     L  L      G GF +    +++ ++    K+  G
Sbjct  269  LLALLLLILAALGLLLLSLT--LSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERG  326

Query  418  ---ALLFTGYCVGNIIGP  432
                L  T   +G  +GP
Sbjct  327  TASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.323    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 550599736


Query= TCONS_00023263

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00023264

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00023265

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00023266

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00023269

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00027544

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00023267

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00027545

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00027546

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00023270

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00023268

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00027547

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00023274

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00027548

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00023273

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00023277

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00023272

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00023271

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00023275

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00023276

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00023278

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00027549

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00027550

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00027551

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00027552

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00023280

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00023281

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00023283

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00027553

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00027554

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00023285

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00023282

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00023286

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00023287

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00023288

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00023289

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00023290

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00023291

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00027555

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00023292

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00027556

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00027557

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00027558

Length=271


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00023293

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.124    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00027559

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00023294

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00027561

Length=215


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00023295

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00023296

Length=215


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00023298

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00023297

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00027562

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00023299

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00027564

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00027563

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00023300

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00027565

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00023301

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00023302

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00023303

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00027566

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00023304

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023305

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00027567

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023306

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00023307

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00023309

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00023308

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00023310

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00027569

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00023311

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00023312

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00023313

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00023314

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.328    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00023315

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023316

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00027570

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00023317

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00023318

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00023319

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00023320

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00023321

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00023322

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00023324

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00023323

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00023326

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00023325

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00027573

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00027575

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00023328

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00023329

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00023330

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00027577

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00023336

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.143    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00027579

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00027580

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00027581

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00023337

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00023338

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.116    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023339

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.116    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023340

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.116    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00027582

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00023341

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.502    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00023342

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00023343

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00027583

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00023345

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00027584

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00027585

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00023346

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00023347

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00023348

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00023349

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00027586

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00023351

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00027587

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00023350

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00027588

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00023352

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00027589

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00023353

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00023354

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00023357

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00023358

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.339    0.149    0.522    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00023359

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00023360

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00027590

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00027591

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00023363

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00023364

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.148    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00023365

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00027593

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00027594

Length=20


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.145    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 66022480


Query= TCONS_00023367

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00023366

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00023368

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00027595

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00023370

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00023371

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00023372

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00027596

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00023375

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.493    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00027597

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00023377

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00027598

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00027599

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.112    0.294    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00023378

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.112    0.294    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00027600

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.112    0.294    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00027601

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.112    0.294    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00027602

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.112    0.294    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00023379

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.112    0.294    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00023380

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00023381

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.112    0.294    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00027603

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00023382

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00023383

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00027605

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00027604

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00023386

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00023387

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.513    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023388

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00027606

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00027607

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00023390

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00027608

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00027609

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.126    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00023392

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00023396

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.134    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00023393

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00027610

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023394

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023395

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00027611

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00027612

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023397

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.134    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00023398

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023399

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023400

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00023401

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.151    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00023402

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00023403

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00023404

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00023405

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00027613

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00023406

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00023407

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00023409

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00023408

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00027616

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00023411

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00027617

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00023412

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00023415

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00023413

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00023414

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00027619

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00023416

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00023417

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00023418

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00023419

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00023420

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00023421

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00023422

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00023424

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00027620

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00023425

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00027621

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00027623

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00027622

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00023426

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00023427

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00023430

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00023439

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00027626

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00027625

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023432

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023431

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023435

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023434

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023433

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023438

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.145    0.564    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00023437

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023436

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00027627

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023440

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023441

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00027629

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00027628

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00027630

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00027631

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023442

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00027634

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00027633

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00027632

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00027635

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023443

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023446

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023445

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023444

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023447

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00023448

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00027639

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00023451

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00023450

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00023452

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00023453

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00023454

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00023457

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00023456

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00023455

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00027640

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023458

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023459

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023460

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00027641

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00023461

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00023462

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.533    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00023463

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00023464

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00023465

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00023468

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00023466

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00027642

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00023467

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00023469

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00023470

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00023471

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00027645

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00023472

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00027646

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023473

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023474

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00023475

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00027647

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00023479

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00023476

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00023478

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00027648

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00023480

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00023481

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00023484

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00023483

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00023482

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00023477

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00027649

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00023485

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.299    0.106    0.275    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023486

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.299    0.106    0.275    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023487

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00023488

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00023490

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00027651

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00023491

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00027652

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00023492

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00027653

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00027654

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00027655

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00023493

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00023494

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.118    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00023495

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.118    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00027656

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00023496

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00023497

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00027657

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023499

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023500

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023502

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00023501

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00027658

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00027659

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00023503

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00027660

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00027661

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023504

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00023505

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00023506

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00027665

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00027664

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00023508

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00027666

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00027667

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00023510

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00023511

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00023512

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00023513

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00023514

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00023515

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023516

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023517

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00023518

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00027670

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00027669

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00023519

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00023520

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00023521

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00027672

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00027673

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00023522

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00023523

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00027674

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00023526

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00023527

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00027675

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00027676

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00023528

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00027677

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023529

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00027678

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00023532

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00027679

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023531

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023533

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00023534

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00023536

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00023538

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00023539

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00023540

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00027681

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00027682

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00027683

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00027684

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00027685

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00023542

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00027686

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00027687

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00023543

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00023544

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.147    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00023545

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00023546

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00023547

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.147    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00023548

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.150    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00023550

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00023552

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00023553

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00027691

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00023551

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00023555

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00027692

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00027693

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00023556

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00023557

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00023558

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00027694

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00027695

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00023560

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00023561

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00027696

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00023562

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00027697

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00023563

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00023564

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00023565

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00023567

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00023568

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.118    0.305    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00023569

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.118    0.305    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00023570

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023571

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00027699

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00023572

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00023574

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00023573

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00023575

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00027701

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00027700

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00023576

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00023578

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00023579

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00023580

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00027702

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00027703

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00023582

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00023581

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00023585

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00023584

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00027704

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00023586

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00027705

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00023587

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00027706

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00023588

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00027707

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00023589

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00023590

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00023592

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00027708

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00023593

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00023595

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00023596

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00027710

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00023597

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00023599

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00023598

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00023600

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00023601

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00027711

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00027712

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00023604

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00023602

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00027713

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00023603

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00027714

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00027715

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00023605

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00023606

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00023607

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00027716

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00023613

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.339    0.147    0.502    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00023614

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00023615

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00023618

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00023619

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00023617

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00023616

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00023621

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00023622

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.119    0.321    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00023623

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00027717

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.119    0.321    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00023624

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00027718

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00023627

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023626

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023628

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00027719

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00023629

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00023630

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00023631

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00023632

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.127    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00023633

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00023634

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.127    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00027720

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00027721

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00027722

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00027724

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00023636

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.148    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00027726

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.148    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00027727

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.146    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00023637

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00023638

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00023639

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00023640

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00023641

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00023642

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00023643

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00023644

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.125    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023645

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00023646

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00027728

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00023647

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.146    0.502    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00023648

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.146    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00027730

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00027731

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00023650

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00023653

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00023654

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.133    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00023655

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00023656

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00027734

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.128    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00027735

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00023658

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00023659

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00027736

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00023660

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00027737

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00023662

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00023663

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00023664

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00027738

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00027739

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00027740

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00027741

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.143    0.508    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00023665

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00023666

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00023667

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00027742

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.143    0.508    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00027743

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00023668

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.143    0.508    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00023669

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.143    0.508    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00023670

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.143    0.508    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00027744

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.143    0.508    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00023671

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00023672

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00027747

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.141    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00023679

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.141    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00023680

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.148    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00023681

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.328    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00023682

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00023683

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.148    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00023684

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00023685

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00023686

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.143    0.492    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00023687

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00027748

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00023689

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00023688

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00027749

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00023691

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00027751

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00027750

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00023692

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00023690

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00027752

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00023693

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00023694

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.122    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00023695

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00023696

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00023697

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00023698

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00023699

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00023707

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.125    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00027758

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00023708

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00023709

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00023710

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00023711

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00027759

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00023712

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00023713

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00027760

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00023714

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00023716

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00027762

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00027761

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00027763

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00023717

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00023718

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00023715

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00023719

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00023720

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00027765

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00027764

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00023722

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00027767

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00023721

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00023724

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00023723

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00027768

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00023729

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00023726

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00023730

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00023731

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00023733

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.146    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023735

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.123    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00023737

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00023738

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00023739

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00023740

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.141    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00023741

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00027769

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023742

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023743

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023744

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00027770

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00023757

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00023746

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00023745

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00027771

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00023748

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00023750

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00023755

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00023752

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00023751

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00023753

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00023754

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00027772

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00027773

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.573    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00027774

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00027775

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00023756

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00027776

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00023758

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00027777

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00023759

Length=22


***** No hits found *****



Lambda      K        H        a         alpha
   0.343    0.143    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 72624728


Query= TCONS_00023760

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00023761

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00023762

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00023763

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00023764

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00023765

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00023766

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00027778

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00027779

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00027780

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00023767

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00023768

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00023769

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00023771

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00023770

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00023773

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00023777

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00023779

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00023780

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00023781

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00027785

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00027786

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00027787

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00023782

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00023783

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00027788

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00023785

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00023786

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00023787

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00023788

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00023789

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00023790

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00023791

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00027790

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00027791

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.122    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00023792

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.122    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00027792

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.122    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00027793

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00023793

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00027794

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00023795

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00023796

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00023797

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00023798

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00023799

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00027795

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.113    0.302    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00023800

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.113    0.302    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00027796

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.113    0.302    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00023801

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.113    0.302    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00023802

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.113    0.302    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00023803

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00023804

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00027798

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00023805

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00023806

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00023807

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00023808

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00023809

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00027799

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.133    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00027800

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.133    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00023810

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00023811

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00023812

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00027801

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00027802

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00023814

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00027803

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.117    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00027804

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.117    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00023818

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.117    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00023815

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.117    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00023816

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.117    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00023817

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.117    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00023819

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.117    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00027805

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.117    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00027806

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.117    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00027807

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00023820

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00023821

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00023822

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00027808

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00027809

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00023823

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00023824

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00023825

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00023826

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00023827

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00023828

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00023829

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00027811

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00023830

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00023831

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00027812

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00023833

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00023834

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00023835

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00023836

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00023837

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00023838

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00023839

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00027815

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00027816

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00027817

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00023840

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00027818

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00023841

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00023842

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00023845

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00027820

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00027821

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00027822

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.129    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00027823

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.117    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00027824

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00023846

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00027825

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00023849

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00023850

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00023851

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00023852

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00027826

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00027827

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00023853

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00023854

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00023855

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00023856

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00023857

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00027829

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00023858

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00023859

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00023860

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00027830

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00027831

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023862

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00023863

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00023864

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.118    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00023865

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00023866

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00023867

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00027832

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00023869

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00023868

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00023870

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00027833

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00023871

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00023872

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00023873

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00023875

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00023874

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00023877

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00023878

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.122    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00023879

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00023881

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00023880

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00023882

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00023884

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00027835

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00027836

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00023883

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00027837

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00023888

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00023887

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00027839

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00027838

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00027841

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00027840

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00027842

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00023889

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00027843

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023890

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00023892

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00023893

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00023894

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00023895

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00027844

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00027845

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00023896

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00027846

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00027847

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00023898

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00027848

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00023899

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00027849

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00027850

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00027851

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00027852

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00023900

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00023901

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00023902

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00023903

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00023905

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00023904

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00023907

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00023908

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00023909

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.121    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00023910

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00027854

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.121    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00023911

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00023912

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00023913

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00027855

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00027856

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00023914

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00023915

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00027857

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00027858

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00023917

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.145    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00023918

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00023920

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00023919

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00027860

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00027861

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00023922

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00023921

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00023925

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00023924

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00023923

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00023926

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00027862

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00023927

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00023928

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00027863

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00027864

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00023929

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00027865

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00027866

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00027867

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00023932

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00027868

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00023933

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00023935

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00027870

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00023934

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00027874

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00027875

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00023939

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00023941

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00023940

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00023942

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00023943

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00027877

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00027876

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00023944

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023945

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.119    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00023946

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00023947

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00027878

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00023949

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00027879

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00023950

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00027881

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00027883

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00027882

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023948

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00023951

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00027884

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00027886

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00027885

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00027887

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00023952

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00027888

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00023953

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00027889

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00023955

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00023954

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00027890

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00023956

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00027891

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00023957

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.143    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00023959

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00023960

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.145    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00023958

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.143    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023961

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00023962

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00023963

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00023964

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00027892

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00027893

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00023965

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00027895

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00027894

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00027896

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00027898

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00027899

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00027897

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00023966

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00023967

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00027900

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023968

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00023969

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00023970

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00023974

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00023972

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00023973

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00027901

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00023975

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00023976

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.313    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00023977

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00027902

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00027904

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00023979

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00027905

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00023980

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00023981

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00027906

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00023982

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00027907

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00023983

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00023985

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00023984

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00023986

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00027909

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00027908

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00027910

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00023987

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00023988

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00023989

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00027913

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00027912

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00027911

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00023990

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00023992

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00023991

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00027914

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00027916

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00027915

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023993

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00027918

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00027919

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00027917

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023994

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00023995

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00023996

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00027920

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00023998

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00023999

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00027921

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00024000

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00027922

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00024002

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00024001

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00027923

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00024003

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00027925

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00027924

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00024004

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00027926

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00027927

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00024005

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00024006

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00027928

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00027930

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00024009

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00024010

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00027932

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00027931

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00027933

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00024011

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00024012

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00027934

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00027935

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00024014

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00024016

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.143    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00024018

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00024020

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00024021

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00027937

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00027938

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00024022

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00024023

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00024024

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00024025

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00024026

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00024027

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00024034

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00024035

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00024036

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00024037

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00024028

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.148    0.499    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00024029

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00027939

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00024030

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00024031

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00027940

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00027941

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00027942

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00024032

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00024038

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00024039

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00024040

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00024041

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00024042

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00024043

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00024044

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.143    0.516    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00024045

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00024046

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.143    0.516    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00024048

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00024047

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00024049

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00027945

Length=220


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00024050

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00024051

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00027946

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00024052

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00024053

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00027947

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00027948

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00024054

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00024055

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00027949

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00024058

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00024057

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00024056

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00024060

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00024061

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00024067

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00027950

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00027951

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00024062

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00024063

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00024064

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00024065

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00024066

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00027952

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00027953

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00024068

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00024069

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00024070

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00027954

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00027956

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00027955

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00024071

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00024072

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00027957

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00027958

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00027959

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00024074

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00024075

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00024076

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00024077

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00024078

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00024079

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00027961

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00027960

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00027962

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00027963

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00024081

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00024082

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00024084

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00027964

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00027965

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00027966

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00024090

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00024086

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00027967

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00027969

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00027968

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00024087

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00024085

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00027970

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00027971

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00024088

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00027972

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00024089

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00027973

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00027974

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00027975

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00024092

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00024091

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00027976

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00027977

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00024093

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00024094

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00024095

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00024096

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00024097

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00027978

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00027979

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00027980

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00027981

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00027982

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00027983

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00024098

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00027984

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00024099

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00024101

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00024102

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00027986

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.297    0.112    0.276    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00024104

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00027988

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00024108

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.148    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00024106

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.148    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00024110

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.148    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00024107

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.148    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00024109

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.148    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00024111

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.148    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00027989

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.148    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00024112

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.148    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00024113

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.148    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00027990

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00024119

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00024116

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00024114

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00024115

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00024117

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00024118

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00027991

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00024120

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00024121

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00024127

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00024122

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00024123

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00024126

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00024125

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00024124

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00027993

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00024128

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00024129

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00024132

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00024130

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00024131

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00024133

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00027994

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00027995

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00024134

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00024135

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00027996

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00024137

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00024136

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00024138

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00027997

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00024139

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00024140

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00024141

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00024142

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00027998

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00027999

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00028000

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00024143

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00024144

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00028001

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00024145

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00024148

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00024146

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00028002

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00024149

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00024150

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00028003

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00028005

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00028004

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00024152

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00024155

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00024154

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00028006

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00024157

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00024158

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00024159

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.135    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024160

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00028007

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00024162

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00024163

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00024165

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00024167

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00024166

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00024168

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00024180

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00024169

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00024172

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00024171

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00024170

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00028008

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00024173

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00028009

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00024176

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00024175

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00024174

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00028010

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00024178

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00024177

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00024179

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00024181

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00028011

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00024182

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00028012

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00028013

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00024184

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00024185

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00024186

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00028014

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00028015

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00024187

Length=24


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 79226976


Query= TCONS_00024188

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00024190

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00024189

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00024191

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00024192

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00024193

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00024194

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00024195

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00024196

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00024197

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00024198

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00028016

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00028018

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00024199

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00024200

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00028019

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00024201

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00028020

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.151    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00024202

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.151    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00024203

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.151    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00028022

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.151    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00024204

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.151    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00024205

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.117    0.294    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00024206

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00024207

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00024208

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00024209

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00024210

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00024211

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00024212

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00024213

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028024

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00024214

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028025

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00028026

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00028027

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00028028

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00028029

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00028030

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00028031

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00028032

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00024216

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00024215

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00028033

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00028034

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00028035

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00028036

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00024217

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00024218

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00024219

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00028037

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00024220

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.142    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00024221

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.142    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00024223

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.142    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00028038

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.142    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00024222

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00024224

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00024225

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00024226

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00024227

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00028039

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00024228

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00024229

Length=258


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00024233

Length=258


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00024230

Length=258


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00024231

Length=258


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00028040

Length=258


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00024232

Length=258


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00028041

Length=258


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00028042

Length=258


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00024234

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00024235

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00024236

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00024237

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00024238

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.134    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00028043

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024239

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00024241

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.129    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00024240

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.129    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00024243

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00024242

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00024244

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.129    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00024245

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.129    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00028044

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.130    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00024246

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00024247

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00024248

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00024249

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00024250

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00024251

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00028045

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00024252

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00024253

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00024255

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00024257

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00024256

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00024258

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00028047

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00028048

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00024259

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00028049

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00028050

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00024260

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00024261

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024262

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00024263

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00028051

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00028052

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00024264

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00028053

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024265

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00028054

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00024266

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00028055

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00028056

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00024267

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00028057

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00024268

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00028058

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00024269

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00024271

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00028059

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00028061

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00024272

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00024273

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00024274

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.121    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00028062

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.121    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00028063

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00024276

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00024277

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00028064

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.151    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00024278

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00024281

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00024279

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.151    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00024280

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00028068

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00028069

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00024282

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00024283

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.151    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00024285

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00024286

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00028071

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00024287

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00024288

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00024289

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00024290

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00028073

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00024292

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00028074

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00028075

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.339    0.148    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00028077

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00024297

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00028080

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00024300

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00024301

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00024302

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00024304

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00024303

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00028081

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00024305

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00024306

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00024307

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00024308

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00024309

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00024310

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.129    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00024311

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00028082

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00028083

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00024312

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00028084

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00024313

Length=23


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 75925852


Query= TCONS_00024314

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.139    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00024316

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00028085

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00024317

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00024318

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00024319

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00028086

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00024320

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00028087

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00028088

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00028089

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00024321

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00028091

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00024322

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00024323

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00024325

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00024326

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00024327

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00028092

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00024328

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00028093

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00024330

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00024331

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00024332

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00024333

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00028095

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00028096

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00028098

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00024336

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00024337

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00024338

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00028100

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00028101

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00024339

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00024340

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00024342

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00024341

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00028102

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00028103

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00024344

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00024343

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00028104

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00024345

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00028105

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00028106

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00024351

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00024348

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00024349

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00024347

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00024346

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00028107

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00024352

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028109

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.143    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00028108

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.143    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00024354

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00028110

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00024353

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00024355

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00024356

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00024357

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00024360

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00024359

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00024358

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00028111

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00024362

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00024363

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00028112

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00028113

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00028114

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00024364

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00028115

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00024365

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.146    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00024366

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.146    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00024368

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.526    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00024369

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00024370

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00024371

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.125    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00028116

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00028117

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00024372

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00024374

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00024373

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00028118

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00024375

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00024376

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00024377

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00028120

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024378

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00028121

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024379

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024380

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024381

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024382

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024383

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.139    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00024384

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.145    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00024385

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.145    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00024386

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00024387

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00024388

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00024389

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00024390

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00028124

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00028123

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00028125

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00024394

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00024391

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.128    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00028126

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.128    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00024393

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00024392

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.128    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00024395

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00024396

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00028127

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024398

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024399

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.129    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00024400

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00028128

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00024401

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00028129

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00028130

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00024403

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00024402

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00024404

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00024405

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00028132

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00024406

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00028133

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00024407

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00024409

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00024408

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00024410

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00028135

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00028136

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00024417

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.150    0.508    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00024416

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.150    0.512    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00024412

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.150    0.508    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00024413

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.150    0.511    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00024415

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.151    0.523    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00024414

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.151    0.523    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00024418

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.150    0.512    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00024419

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00024421

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00024420

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00024422

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00024423

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00028138

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00024424

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00024426

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00024425

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00024429

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00028139

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00028140

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00024427

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00024428

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00024430

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00024431

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00024432

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00028141

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00024433

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00028142

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00024434

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00024435

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00024436

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00024439

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00024440

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.119    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00024441

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00028144

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00024442

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.125    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00024443

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00024444

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00024445

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00024446

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00024447

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00028145

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00024448

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00024449

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00028146

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00024450

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00028148

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00028149

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00024452

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00024453

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00028151

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00028150

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00024454

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00028152

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00028153

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00028154

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00024455

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00024456

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00024457

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00028155

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00028156

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00028157

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00024458

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00024460

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00024461

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00024462

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00024463

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00028158

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00024464

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00024465

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00024466

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00024467

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00028159

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00024468

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00028161

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00028160

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00028162

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00028163

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00028164

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00024469

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00028165

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00024470

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00024471

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00024472

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00028166

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00024473

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00024474

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00024475

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00024476

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00028167

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00028168

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00024477

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00028169

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024479

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024480

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024478

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00028170

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00028171

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024481

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00024482

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00028172

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00028173

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00028174

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00024483

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00024484

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00024485

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00028176

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00028177

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00028178

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00024486

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00028179

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00028180

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00024488

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00024490

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00024491

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00028181

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00028183

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00024492

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00024495

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00024493

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00024494

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00024496

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.118    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00024497

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00024498

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00024499

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00028184

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00024500

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00028185

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00024501

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00028186

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00024502

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00024503

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00024504

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00024505

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00024506

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00024507

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00028187

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024508

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024509

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024510

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00024511

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00024512

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.118    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00028189

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.149    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00028190

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.149    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00024513

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00024514

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.149    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00028191

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.149    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00024515

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.149    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00028192

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.149    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00024517

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00028193

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00028194

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00024516

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00024518

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00024519

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00024520

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00024521

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00024522

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00024523

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00028196

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00028197

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00028198

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00028199

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00028201

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00028200

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00024524

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00028202

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00024525

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00024526

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00024527

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00028203

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00028204

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00024528

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00028205

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00028206

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00028207

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00024529

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00028208

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00024533

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.124    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00028209

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.124    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00024534

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00028210

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.124    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00024535

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00024536

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.124    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00028211

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.120    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00024537

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00024538

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00024539

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00024540

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00024541

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00028213

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00028212

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00024542

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00024543

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00024545

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00024544

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00028214

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00024547

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00028215

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.133    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00024546

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00024548

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00028217

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00028218

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00024550

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00028219

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00024549

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00028220

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00024552

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00024554

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00024553

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00024555

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00028221

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00028222

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00024559

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00028223

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00024556

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00028224

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00024558

Length=21


***** No hits found *****



Lambda      K        H        a         alpha
   0.343    0.150    0.492    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 69323604


Query= TCONS_00028226

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00028227

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00028228

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00024560

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00024561

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00024562

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00024563

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00024564

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00028229

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.144    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00024565

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00024566

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00028230

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.123    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00024568

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00024567

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.123    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00024571

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.123    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00028232

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00024572

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00024573

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00024574

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00028233

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00028234

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00024575

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00024578

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00024577

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00024576

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00024579

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00028236

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00028239

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024580

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024581

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00028241

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00024582

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00024583

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00024584

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00024585

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00028243

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00028244

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00028245

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00024586

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00024587

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00024589

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00024588

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00024590

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00024591

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00024592

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00024593

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00028246

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00028247

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.120    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00024594

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00024595

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00028249

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00024596

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028250

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00024602

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00028251

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00024598

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00028252

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00024599

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00028253

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.119    0.316    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00024600

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00024601

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00024604

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00024605

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00024606

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.134    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00028255

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00024607

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00024608

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00028256

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00028257

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00024610

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00024611

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00024612

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00028258

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00028259

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00028260

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00024613

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00028261

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00024614

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00028262

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00024615

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.124    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00024616

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00028263

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00024618

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00024620

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.124    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00024619

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00028265

Length=751


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 956034864


Query= TCONS_00024621

Length=751


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 956034864


Query= TCONS_00024622

Length=751


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 956034864


Query= TCONS_00024624

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00028266

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.146    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00024625

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.503    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00024626

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.146    0.512    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00024627

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.145    0.504    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00024653

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00024654

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00024655

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00024657

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00028280

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.139    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00024658

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.139    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00028281

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.139    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00024659

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.146    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00024660

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00028282

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.139    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00028283

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.146    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00024661

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.146    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00028295

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00028296

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00024683

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.145    0.504    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00024628

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00024629

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00024631

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00028267

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00028268

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.145    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00028269

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00028270

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00024633

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00028271

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.118    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00024634

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.118    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00024635

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00024636

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00028273

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00024637

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00024638

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00024641

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00024640

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00024639

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00024644

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00024643

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00028274

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00024642

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00024645

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00024647

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00024648

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00028275

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028276

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00028277

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.143    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00024651

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00024652

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00024664

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00028284

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00024665

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00028285

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00028286

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00024666

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00024667

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.561    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00024668

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.561    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00024669

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00028287

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00028288

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00028289

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00028290

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00028291

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00024671

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00024672

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00024673

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00024675

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00024676

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00024677

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00024678

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00024679

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00028292

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00024680

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00028293

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00024681

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00024682

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00028294

Length=212


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00024685

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00024686

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00024688

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00024687

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028297

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028298

Length=290


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00028299

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00024689

Length=290


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00024691

Length=290


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00028300

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00024690

Length=282


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.128    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00028301

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.320    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00024692

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.318    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00024693

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.318    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00028302

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00028303

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.318    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00024694

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.318    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00024696

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00024697

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00024698

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00024699

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00028304

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00024700

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00024701

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00024702

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00028305

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00024703

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00028306

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00024705

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00024704

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00024707

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.123    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00024706

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00028308

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00028307

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00024708

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00028309

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00024709

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00028310

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00028311

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00028312

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00028313

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00024710

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00028314

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00028316

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00028315

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00028317

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00028318

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00024712

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00024713

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.342    0.153    0.504    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00024711

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00024716

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00024715

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00024717

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00024718

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00024719

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00028321

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00028322

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00024720

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00024722

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.143    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00024726

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00024728

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.143    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00024729

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00028323

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00028324

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00024730

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00024731

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00028326

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00024732

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00024733

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00028327

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00028328

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00024735

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00024736

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00024738

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00024739

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00024747

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00024743

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00024744

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00024742

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00024746

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00024748

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00028329

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00024750

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00024749

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00024751

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00024752

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00024753

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00024754

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00024758

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00024755

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00024756

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00028330

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00024757

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00028331

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00024759

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00028332

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00028333

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00024760

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00024761

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00024763

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.129    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00028334

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00024764

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.126    0.316    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00028335

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00024765

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00024767

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00028336

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00024768

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00024769

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00024770

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00024771

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.125    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00024772

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00028338

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00028339

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00024773

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00028340

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00028341

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00024777

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00028342

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00028343

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00024775

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00024776

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00028344

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00028345

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00028346

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00024778

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00024779

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00028347

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00028350

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00028351

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00024782

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00024783

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00024784

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00024785

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00024786

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00024787

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00024788

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028352

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00024789

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028353

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028354

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00024790

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00024791

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028357

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028358

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00024792

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028359

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028360

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.144    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00028361

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00024793

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.155    0.524    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00024794

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00024795

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.150    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00028363

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.150    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00024796

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00024797

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00024798

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00028364

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00024799

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00024800

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00024801

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00024802

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00024803

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00028365

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00024804

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00024807

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00028366

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00024805

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00024806

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00024808

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00024809

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00024810

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00028367

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00024811

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00024812

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00028368

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00024813

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00028369

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00024817

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00028371

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00024819

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00028372

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00024820

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00024821

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00024822

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00024823

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00024824

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.147    0.519    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00024825

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.147    0.519    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00028373

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00024855

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00024860

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00024862

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00024856

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00024857

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00028393

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00024858

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00028394

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00024859

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00024861

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00024863

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00024864

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00024865

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00024866

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.140    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00028395

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00024867

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.140    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00024868

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00024869

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00024870

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00028396

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00028397

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00028398

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00024871

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00024872

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00028399

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00024875

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00024874

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00028400

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00028401

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00028402

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00024876

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00024877

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00024878

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00028404

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00028403

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00028406

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00024881

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00024882

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.123    0.311    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00028374

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00024827

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00028375

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00024828

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00024829

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00024830

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.148    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00024832

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00024839

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00024833

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00024834

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00024835

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00024836

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00028376

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00028378

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00024838

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00024837

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00024840

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00028379

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00024841

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00028380

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00028381

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00028382

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00028383

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00024843

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00024844

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00028384

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00024845

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00028385

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00028386

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00028387

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00024846

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00028388

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00028390

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00028389

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00024848

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00024847

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00028392

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00024849

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00024851

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00024853

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00024883

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00024884

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00024885

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00024886

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00024888

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00028407

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00028408

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00024889

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00024890

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00024891

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00024892

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00024895

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.146    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00024894

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.146    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00028409

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.146    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00024896

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.146    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00024898

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00024899

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00024900

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00024901

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.121    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00024902

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00024903

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00024904

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00028414

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00028415

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00024907

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00028416

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.143    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00028417

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00028418

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00024908

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00024909

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00024910

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00024911

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00024912

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00024913

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00024914

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00024915

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00028419

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00024917

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.113    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00028420

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00024919

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00024918

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00024920

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00024921

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00028421

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00028423

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00028424

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00024922

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00024923

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00028425

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00024924

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00028426

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00024925

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00024926

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00024927

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00028427

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00028428

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00024928

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00024929

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00024931

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.510    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00024930

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.510    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00024932

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.510    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00024933

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00028431

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00024935

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00024936

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00024937

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00024938

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00028432

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00024939

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00024934

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00028433

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00024941

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00028435

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00024943

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00024944

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00024945

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00024946

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00028436

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00024947

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00024948

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00028437

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00024949

Length=317


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00024950

Length=317


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00028438

Length=317


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00028439

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.126    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00028440

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.142    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00028441

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.142    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00028442

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.126    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00024951

Length=23


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 75925852


Query= TCONS_00024952

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.142    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00024953

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.126    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00028444

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00024956

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00024957

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00028445

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00028446

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00024959

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00024960

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00028448

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00024962

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00024963

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00024964

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.125    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00024965

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.125    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00024966

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00028449

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00024968

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00024969

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00024971

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00024972

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00024973

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00024974

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00024975

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00024976

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00024977

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00028454

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00028453

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00024979

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.144    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00024980

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00024981

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00024982

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00028456

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00028457

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00024983

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00024984

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00024985

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00028458

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00028459

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00028460

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00028461

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00024986

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.136    0.517    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00028462

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00028463

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00024988

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00028464

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024990

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024993

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00024991

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00028466

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00024995

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.147    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00024997

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.149    0.531    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00024998

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.153    0.517    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00024999

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00025000

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.153    0.517    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00025001

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.153    0.517    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00028467

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.153    0.517    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00025002

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00028470

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00028469

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00028468

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00025003

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00028471

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00025006

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00025005

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00028472

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00028473

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00028474

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00028476

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00028475

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00025007

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00028477

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00025008

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00025010

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00025009

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00025011

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00028478

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00025012

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00025014

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00025013

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00028479

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00025017

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00025016

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00025015

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00028480

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00028481

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00028482

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00025020

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00025019

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00025018

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00028483

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00028484

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00025021

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00025022

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00028485

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00025025

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00025024

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00028486

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00028487

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.139    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00025026

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00025029

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00025028

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00025030

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00028489

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00025031

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00028490

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00028491

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00025032

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00025033

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00025035

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00025034

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00025036

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00028493

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00025038

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00025039

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00025040

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00025041

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.146    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00025042

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.146    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00025044

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.141    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00028495

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.141    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00025046

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00025045

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00025047

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00025048

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.128    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00025049

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.128    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00028498

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.128    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00025052

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00025054

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00025053

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00025055

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00025056

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00028500

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.121    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00028502

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.121    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00028501

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00025057

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.121    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00025058

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.121    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00028503

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00025060

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00025061

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00025063

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00025062

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00025065

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00025064

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00025066

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00025067

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00025068

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00028505

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00025069

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00025070

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00028507

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00025072

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00025071

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00025073

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00025074

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00028513

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00025087

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00028514

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00028515

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00025088

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00025089

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00028516

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00025090

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00025091

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00025092

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00025093

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00025094

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00025095

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00028517

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00028518

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00025096

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00025097

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00025098

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00025099

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00028519

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00028521

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00028522

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00025101

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00025102

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00025103

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00025104

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00028524

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00025105

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00028525

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00025106

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00025110

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00028527

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00025113

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00025114

Length=23


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 75925852


Query= TCONS_00025115

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00025116

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00028528

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00025117

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00025120

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00025119

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00025118

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00025121

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00028529

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00028530

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00025123

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00025122

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00028532

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00028531

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00025124

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00025125

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00025126

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00028533

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00028534

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00025127

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.118    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00028535

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.118    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00025128

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00028536

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00028538

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00028539

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00028540

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00028541

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00025130

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00025075

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00025076

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00028510

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00028511

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.123    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00025081

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.122    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00025079

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00025077

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00025078

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00028512

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00025080

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00025084

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00025082

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00025083

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00025085

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00025108

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00025109

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00028542

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00028543

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00028544

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00025131

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00025132

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.130    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00025133

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.130    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00025134

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.121    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00025135

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.130    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00025136

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00025137

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00025138

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00028547

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00028548

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00025139

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.130    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00025140

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.132    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00025141

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.130    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00025142

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00028550

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.130    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00025143

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.130    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00025144

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00025145

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00025147

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00025146

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00025148

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00025150

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00025149

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00028554

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00025151

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00025152

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00028555

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00028556

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025156

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00025155

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00025153

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00025154

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00025157

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00028557

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00025158

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00025159

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00028558

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00025160

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00025162

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00025163

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00028560

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00025161

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00028561

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00025164

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00025165

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00025166

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00025167

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00025168

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00025169

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00025170

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00028565

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00025171

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00028566

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00025172

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00025173

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00028567

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00025174

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.143    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00025179

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00028568

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00025175

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00025176

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00025177

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00025178

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00025180

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00025181

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00028569

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00025182

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.147    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00025183

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.146    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00025184

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00025186

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00025187

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00025188

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00025189

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00028572

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00028573

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00028574

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00025190

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00028575

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00025191

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00025192

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00028576

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00028577

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00025193

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00025194

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00028579

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00025195

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00025196

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025198

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00025197

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.504    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00025199

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00028582

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00028584

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00025200

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00025201

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00025202

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00028585

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.125    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00025203

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00025206

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00025207

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00028586

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00028587

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00028589

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00025210

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00025211

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00028590

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00025214

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00025213

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00025215

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00025216

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00025217

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025219

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00025220

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00028592

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00025221

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00028593

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025224

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025225

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028594

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025223

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028595

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028596

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028597

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.136    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00028598

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00028599

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00025231

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.141    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025232

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00028601

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00028602

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00028603

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00025233

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00025235

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00025234

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00028604

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00025236

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00028605

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00028606

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00028607

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025238

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00025239

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.141    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025240

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00025241

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00028609

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00025242

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00025243

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00025244

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00028610

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00025245

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00025246

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00025247

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00025248

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00028611

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00025249

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00025250

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00025251

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00025252

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00025253

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.121    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00028612

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00025254

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00028613

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00025255

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.118    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00025256

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00025257

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00025258

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00028614

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00028615

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00028617

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.493    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00025260

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00028618

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.136    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00025261

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00028619

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00025262

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00025263

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00025264

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00028620

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00028621

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00025265

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00025266

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00025267

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00025268

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00028623

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00025269

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00025270

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00025271

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00025272

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00028624

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00025276

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.147    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00025274

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00025273

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00025275

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00025278

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00025277

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00028625

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00028626

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00025279

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00025281

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00028627

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00025282

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00025283

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00025285

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00025284

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00025287

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00025288

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00025286

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00025289

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00028628

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00028629

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00028630

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00025294

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00025290

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00025291

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00025292

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00025293

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00028631

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00025295

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00025296

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00028634

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00028633

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00025301

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00028636

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00028635

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00025304

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00025306

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00025307

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00025308

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00028637

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00025310

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00025309

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00025311

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00025312

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00028638

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00025313

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00025314

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00025315

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00025316

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00025317

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00025318

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00028639

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00028640

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00028641

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00025319

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00028642

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00025320

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00028643

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00028644

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00028645

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00028646

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00025322

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00025323

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00025324

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00025325

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025328

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00025327

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00025329

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00025330

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00025331

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00025339

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00025332

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00025335

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00025334

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00025333

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00028647

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00025337

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00025336

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00028648

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00025338

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00028649

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00025340

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00025341

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00025342

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00025343

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00025344

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00025345

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00025347

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00025346

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00025349

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00025348

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00025351

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00025350

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00025353

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00025352

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00025355

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00025354

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00028651

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00025356

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00025357

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00028654

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00028653

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00028652

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00028655

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00025358

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00025359

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00025360

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00025361

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00028656

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00025364

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00025363

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00028657

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00025365

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00025367

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025366

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00025369

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025368

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00025370

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00028658

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025371

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00028659

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00028660

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00028661

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00028662

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00025372

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00025373

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00028664

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00025376

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00025375

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00025377

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00028666

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.145    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00025378

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.145    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00028667

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00025379

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00028668

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.145    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00025380

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00025381

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00025382

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00025383

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00028669

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00028670

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00025385

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00025386

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00028671

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00025387

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00025388

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00025389

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00028672

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00025391

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00028673

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00028674

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00028675

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025393

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00028676

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025394

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00028677

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00028678

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00025395

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00028679

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00025397

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00028680

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00025396

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00028681

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00028682

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00025398

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00025399

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00025400

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00028683

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.506    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00028684

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.506    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00025401

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00028685

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00025402

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00025404

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00025405

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.148    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00028686

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00025406

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00025407

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00025408

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00025409

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00028687

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00025410

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00025411

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00025412

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00025413

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00028688

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00025414

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00025417

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00028690

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00025415

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00025416

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00025418

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00025419

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00028691

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00025420

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00025421

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00025422

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00025424

Length=302


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00028693

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00028694

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00025425

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00025426

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00025427

Length=334


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00025428

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00025429

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00025430

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00028697

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00028698

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00025431

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00025432

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00025433

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00025434

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00025435

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00028701

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00028700

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00028702

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00028703

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00028704

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00025436

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00025437

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025438

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00028705

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00025439

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00025440

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00028706

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00025441

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00025442

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00028707

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025444

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025443

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00028708

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00028709

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025446

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00025445

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025447

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00025449

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025448

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025450

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025451

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00025453

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025452

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00028710

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00025454

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025455

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00028711

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025461

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00025458

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00025457

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00025459

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00025464

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00025465

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00028712

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025463

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00028713

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00025462

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00028714

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.125    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00025466

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00028715

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.124    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00028716

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00028718

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00028719

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00025468

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00025470

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00028720

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00025469

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00028721

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00025471

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.129    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00028722

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00025472

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.123    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00025473

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00025474

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00028723

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00025475

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00025476

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00028724

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00025477

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00025481

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00025480

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00025482

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00025483

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00025484

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00025485

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00025486

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00028726

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00028727

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00028728

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00025487

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00025488

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00025490

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00028729

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00028730

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00025491

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00025493

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.145    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00025494

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.145    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00025496

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00028732

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00028733

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00025497

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00025498

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00025499

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00028735

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00028734

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00025504

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00028736

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00025500

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00025501

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00028737

Length=235


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00025502

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00025503

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00028739

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00028738

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00028741

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00028740

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.145    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00025505

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.149    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00025506

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00028742

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00025507

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00025508

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00025509

Length=23


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.133    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 75925852


Query= TCONS_00025510

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00025511

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00025512

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.127    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00028743

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00025513

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00028744

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00025514

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00025516

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00028745

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.127    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00025517

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.128    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00025519

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.128    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00028748

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00025521

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00028750

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00025523

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00025524

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00028751

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00028752

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00028753

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00025525

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00028754

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00025526

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00028755

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00025527

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00025528

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00028757

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00028759

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00028758

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00025529

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00025531

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00028760

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00025532

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00028761

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00025533

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00028762

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00028763

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00028764

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00025530

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00025534

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00025535

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00025536

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00025537

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00025539

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00025538

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00025540

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00028767

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00028766

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00025542

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00025545

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00025544

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00025543

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00025546

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00025547

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00025550

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025549

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025552

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025551

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028769

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.122    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00028768

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00025554

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025553

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00028770

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025555

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025556

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025557

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028773

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.122    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00028774

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028775

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025558

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025559

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028776

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.117    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025560

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00025563

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00025562

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00025561

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00025564

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00025565

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00028778

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00028777

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00025566

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00025567

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00025568

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00025570

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00025571

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00025572

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00025573

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00028783

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00025574

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00025575

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.124    0.310    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00028785

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.121    0.319    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00028786

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.124    0.310    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00028787

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.124    0.310    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00028788

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.124    0.310    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00025576

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00025577

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00025578

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.138    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00025581

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025582

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00025584

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00025583

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00025585

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00025586

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00028796

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00028795

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00025587

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00025588

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00028797

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00028798

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00028799

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00028800

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00025589

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.123    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00028801

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.123    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00028802

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.123    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00025590

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.123    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00028803

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.123    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00025591

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.145    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00025592

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00025593

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00025594

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00025595

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00025596

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00025597

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00028804

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.124    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00025598

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00028805

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00025599

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00028806

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00025600

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00028807

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00028808

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00025602

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00025603

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00025604

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00025605

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00028809

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00028810

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00025606

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00028811

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00028812

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00025608

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00025609

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00025610

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00025611

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00025612

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.146    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00025613

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00028813

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00025615

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00028814

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00025618

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00025617

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00025616

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00028815

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00025619

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00025620

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00025621

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025623

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00025622

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00025624

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00025625

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00025627

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00028818

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00025628

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00025630

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00025629

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00025631

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00028819

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.347    0.149    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00025633

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.147    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00025635

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00028820

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00025637

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00025636

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00028821

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00028822

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00025638

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.147    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00028823

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00028824

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00025639

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00025640

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00025641

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00028825

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00028826

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00028827

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00028828

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00025642

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00025643

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00028829

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00028830

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00028831

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00028832

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.503    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00025647

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00025648

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.154    0.534    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00028833

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.149    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00025649

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.151    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00025650

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00025651

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00025652

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00028834

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00028835

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00025653

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00025654

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00025655

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00028836

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00025656

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00025660

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00025657

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00025658

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00025659

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00028837

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00028838

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00025661

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00028839

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00025663

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.137    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00025662

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.137    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00028841

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00025664

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00025665

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.153    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00028842

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00028843

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00028844

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00028845

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00025667

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00025666

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00028846

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00028847

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00028849

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00025670

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00025669

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00025671

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.144    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00028850

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00025675

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00025674

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00025673

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00028851

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00025676

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00025677

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00025678

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00025679

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00025680

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00025682

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00025681

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00025683

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00025684

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00025685

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00025687

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00028852

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00025689

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00028853

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00025690

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00025692

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00025691

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00028854

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00028855

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00025693

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00025694

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00025695

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00025697

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00028857

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00028856

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00025698

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00028858

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00028859

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00028860

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00025699

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00025700

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00025701

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00028861

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00025702

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00025703

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00025705

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00028862

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00028863

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00025706

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00028864

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00025707

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00025708

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00028865

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00025709

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00028866

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00025710

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00025711

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00025712

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00025713

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00025714

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00028868

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.147    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00025715

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00028869

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00025721

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00028870

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00025716

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00025717

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00025718

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00025720

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00025719

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00028871

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00025722

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028872

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025725

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00025723

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00025724

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00028873

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00028874

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028875

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00025727

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00028878

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00028877

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028879

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028880

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025728

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00028881

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028882

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00025729

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025732

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00025731

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025730

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00028883

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00028884

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025733

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00025735

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00025734

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028885

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028887

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00028886

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00025736

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00028888

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00025737

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00028890

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00025738

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.149    0.522    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00025741

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00025740

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00025739

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00028891

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00025743

Length=197


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00025742

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00028893

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00028894

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00025745

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00025744

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00025746

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00028895

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00025747

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025748

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00025749

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00025754

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00025755

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00025756

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00025760

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00025759

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00025758

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00025757

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00025761

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00025762

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00025763

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00028899

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00025764

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025766

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00025765

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00025767

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00028901

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00025768

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028902

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028903

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025770

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025771

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025772

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00028904

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00025774

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00025773

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00028905

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00028906

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00028907

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00028908

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00025775

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00025776

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00025777

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00028911

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00028910

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00025778

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.139    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00025779

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.141    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028912

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00025780

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00025782

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00028913

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00025783

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00025784

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00028914

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00025785

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00025787

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00025788

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00025790

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00025794

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00025791

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.145    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00025792

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00025793

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00025796

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00028916

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00025797

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00025798

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00028917

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00025799

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.145    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00025800

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.133    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00028918

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.122    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00025801

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.122    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00028919

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.122    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00025802

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00025803

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00028920

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00025804

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00025810

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00025806

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00028922

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00025808

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00025807

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00025809

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00025811

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00025815

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00025812

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.146    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00025813

Length=22


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.144    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 72624728


Query= TCONS_00028923

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.146    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00028924

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.146    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00025814

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.146    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00025817

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00025818

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00025819

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00028925

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00028927

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00025821

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00028929

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00028930

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00025823

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00025824

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00025825

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00025826

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00025827

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00028932

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00028931

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00025828

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00025829

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00025830

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00028933

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00028934

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00028935

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00028936

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00028937

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00028938

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00028939

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00028941

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00025832

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00025833

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00028942

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00025835

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025836

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00025838

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00028944

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00025840

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00025841

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00028945

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00025843

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028946

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00025844

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00025845

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00025846

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00025849

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00025848

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028947

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00025847

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00025850

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028948

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00025852

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028949

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028951

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00028950

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00025851

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00025853

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00025854

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00025855

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00028952

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00028953

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00025857

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00025856

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00025858

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00025859

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00025860

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00028955

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00025861

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00028956

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00025862

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00025863

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00025864

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00025865

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00025867

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00025866

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00028957

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00025868

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00028958

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00025870

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00028960

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00025869

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025871

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00025872

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.132    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00025873

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00028961

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00025880

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025874

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025875

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025877

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00025876

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.122    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00025878

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00028963

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00028962

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00028965

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00028964

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00028966

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025879

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00025881

Length=23


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.131    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 75925852


Query= TCONS_00025882

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025883

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00028967

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00028968

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.147    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00028969

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00025885

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00025886

Length=24


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 79226976


Query= TCONS_00025887

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00025888

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00025890

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00025891

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00028971

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00028972

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00025892

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00025893

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00025894

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00028974

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00025895

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00028975

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00025896

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00025897

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00025898

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00028978

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.145    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00028980

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00025899

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00025901

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.145    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00025902

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00028981

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.147    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00025904

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00025905

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00025906

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00025909

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00025908

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00025907

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00025913

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00025912

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00025911

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00025910

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00028984

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00028983

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00028982

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00025914

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00028985

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00028986

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00025917

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00025918

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00025916

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00025915

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00025920

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00028988

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00028989

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00028990

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00025922

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00025923

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00025924

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00025926

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00025927

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00025928

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00028991

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00028992

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00025929

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00028993

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00025930

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00028996

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00028995

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00028997

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00025931

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00025932

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00025933

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00025934

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00028998

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00028999

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00025935

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00029000

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00029001

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00029002

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00029003

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00025936

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00025937

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00029004

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00025938

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00025939

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00025940

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00025941

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00029005

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00025943

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00025945

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00025946

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00025947

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00025948

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00025949

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00029007

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00029008

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.137    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00025952

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00025953

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00025955

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00025954

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00029009

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00029011

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00029012

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00025956

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00029014

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00029013

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00029015

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.145    0.518    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00025958

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.145    0.518    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00025959

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00029016

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00025960

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00025961

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00025962

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00025963

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00025964

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00029018

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00025965

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00025969

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025968

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025967

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00025970

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.143    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00029021

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.144    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00029022

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.144    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00029023

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.144    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00025971

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.144    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00025972

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00025974

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00025973

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00025975

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00029024

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00029027

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00029028

Length=256


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00025976

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00029029

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00029030

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00025978

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00025977

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00029031

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00025979

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00029032

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00029033

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00025980

Length=256


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00025981

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00025982

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00025983

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00025984

Length=256


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00029034

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00029035

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00029036

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00029037

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00029038

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00025987

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00029039

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00025985

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00025986

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00025988

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00025989

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.504    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00025991

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00029040

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00029041

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025992

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00025993

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00025994

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00025995

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00025996

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.122    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00025997

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.122    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00025998

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.122    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00026000

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00026001

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00029042

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00026002

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00026003

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00026004

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00029043

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00026005

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00026007

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00026006

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00029044

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00026008

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00026009

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00026012

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00026013

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00026014

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00026015

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00029045

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00026018

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00026017

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00029046

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.142    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00026019

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00026022

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.142    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00026021

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00029047

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00026025

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00026023

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00026024

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00029048

Length=306


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00029049

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.147    0.542    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00026026

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.147    0.542    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00026027

Length=306


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00026028

Length=20


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.140    0.513    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 66022480


Query= TCONS_00029051

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00029050

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00029052

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00026029

Length=20


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.140    0.513    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 66022480


Query= TCONS_00026030

Length=306


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00029053

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00029054

Length=306


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00026031

Length=306


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00026032

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00029055

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00029056

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00026033

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00029057

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00026034

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00026037

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00026035

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00029058

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00026038

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00029059

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00026040

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00026039

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00026041

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00026042

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00026043

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00026044

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00026045

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00026046

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.123    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00029060

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00026047

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00026048

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00026050

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00026049

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00026052

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00026051

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00029062

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00029061

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00026053

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00026054

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00026055

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.142    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00026057

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00026058

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00026062

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00026061

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00029065

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00029067

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00029066

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00026060

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00029068

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00029069

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00026064

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00026065

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00026066

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00029071

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.146    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00029072

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00029073

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00029074

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00029076

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00029075

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00026068

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00026069

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00026070

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00026071

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00026073

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00026072

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00026077

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00026079

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00026080

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.146    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00026081

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00029081

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00026082

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00026083

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00026084

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00026085

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.144    0.503    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00029082

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00029083

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00026089

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00029084

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00029085

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00026091

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00029086

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00029087

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00026094

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00029088

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00026092

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00026093

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00029089

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00026095

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00026096

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00026097

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00029090

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00026099

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00026101

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00029091

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00026102

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00026104

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.120    0.323    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00026103

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.120    0.323    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00026105

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00029093

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00026107

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00029094

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00026109

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00026110

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00026111

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00029096

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00029098

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029099

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029097

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00026113

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00029100

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029101

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00026114

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00026115

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00026116

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.152    0.539    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00026118

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00026117

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029103

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029102

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029106

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029105

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029104

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029107

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00026120

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00026119

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00026121

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029109

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029108

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029111

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029112

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029110

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00026124

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00026123

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029113

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00026125

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00026128

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00029114

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00026131

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00026133

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00026132

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00026135

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00026134

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00026137

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00026138

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00029115

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00029116

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00026139

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00026141

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00026144

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00026143

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00026145

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00029118

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00026147

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00026149

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00026148

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00026150

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00026151

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00026152

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00026153

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00026154

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00026155

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00026156

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00026157

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00026158

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00029120

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00029121

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00026160

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00029122

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00029123

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.127    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00029125

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.144    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00029127

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.139    0.499    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00026161

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00026162

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00029128

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00029129

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.127    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00029130

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00029131

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.504    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00026163

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00029132

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00026164

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.134    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00026165

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00026166

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.143    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00029134

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0772    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00029135

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00029137

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00029139

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.127    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00026168

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00029140

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00029141

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00026172

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.145    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00026173

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00026174

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00029143

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00029144

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00029145

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00026176

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00026177

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00026179

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00026180

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00026181

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00029147

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00026182

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00029149

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00026183

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00026184

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00026185

Length=25


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.124    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82528100


Query= TCONS_00029150

Length=23


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.149    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 75925852


Query= TCONS_00029151

Length=23


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.149    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 75925852


Query= TCONS_00029152

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00026188

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00029155

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.154    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00029158

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00029159

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00026193

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00029160

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00026194

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00026196

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00026197

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00029165

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00026199

Length=70
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:407941 pfam18107, HTH_ABP1_N, Fission yeast centromere protei...  68.1    5e-18


>CDD:407941 pfam18107, HTH_ABP1_N, Fission yeast centromere protein N-terminal 
domain.  This domain is found in the fission yeast centromere 
protein (Abp1) in species such as Shizosaccharomyces 
pombe. The domain, referred to as Domain 1, is DNA-binding 
and makes up half of the N-terminal region.
Length=61

 Score = 68.1 bits (167),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 30/58 (52%), Positives = 36/58 (62%), Gaps = 1/58 (2%)

Query  3   QRKPISMSQKAALRAQKCLH-PNVTQKDLRKWFQETYDHTLSSGLISDILSRKYDYLD  59
           +RKPIS  QK ALRA      P  +QK LR WF++ Y   +S   +S ILS KYDYLD
Sbjct  1   RRKPISNEQKKALRAWYFRQNPRPSQKALRTWFEQRYGQPISQSTVSRILSSKYDYLD  58



Lambda      K        H        a         alpha
   0.315    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00029166

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00026200

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00029169

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.120    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00026201

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00029170

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00029171

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00029172

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.121    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00029173

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00029174

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00029175

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.141    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00026202

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00029176

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00029177

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00026203

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00026204

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00026205

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00026206

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00029179

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00029180

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00029181

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  65.7    2e-13


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 65.7 bits (161),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 37/113 (33%), Positives = 56/113 (50%), Gaps = 8/113 (7%)

Query  23   KTILITGANTGLGREAARHALALGAGTVILGVRSLSKGEDAKANIDASTG-----CTDKG  77
            K  L+TGA++G+GR  A+     GA  V+L  RS  K E     + A  G       D  
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGA-KVVLVDRSEEKLEAVAKELGALGGKALFIQGDVT  59

Query  78   KRSRLRSASSQICHRGGRLDMAIMNAGIASV--TYAVTRDGWERGIQVNVLST  128
             R+++++   Q   R GRLD+ + NAGI  +     ++ + WER I VN+   
Sbjct  60   DRAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGV  112



Lambda      K        H        a         alpha
   0.316    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 379043084


Query= TCONS_00029182

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00029183

Length=228


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00029184

Length=1136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           152     3e-39


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 152 bits (386),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 125/569 (22%), Positives = 199/569 (35%), Gaps = 185/569 (33%)

Query  173  YRSADGSYNNPTLPRLGAANTEYARTTEA------SKMRPAS----MPDPGLIFDSIFAR  222
            YR+ DGS NN   P  GAA T +AR          S  R +S    +P P L+ + +FA 
Sbjct  1    YRTIDGSCNNLKNPSWGAAGTPFARLLPPAYEDGVSAPRGSSSGSPLPSPRLVSNKLFAG  60

Query  223  ETFKPHANNVSSIFFTWASLIIHDVFQT--------------------------------  250
            ++  P   N++ +   W   I HD+  T                                
Sbjct  61   DSGIPD-PNLTLLLMQWGQFIDHDLTLTPESTSPNGSSCDCCCPPENLHPPCFPIPIPPD  119

Query  251  -----------------------GYPDQSINKTSSYLDLSTLYGDNQDEQNMIRTFEDGK  287
                                   G P + IN+ +S+LD S +YG +++    +R+F  G 
Sbjct  120  DPFFSPFGVRCMPFVRSAPGCGLGNPREQINQVTSFLDGSQVYGSSEETARSLRSFSGGL  179

Query  288  IK----------------PDCFSEPRLHILPAASG-------VILIMLN----RFHNYVA  320
            +K                  C       +    +G         L  L+    R HN +A
Sbjct  180  LKVNRSDDGKELLPFDPDGPCCCNSSGGVPCFLAGDSRANENPGLTALHTLFLREHNRIA  239

Query  321  EQLAIINENGRFTKPKAEIIDPVEARLAWAKYDNDLFQTARLITCGMYINITLYDYLRTI  380
            ++LA +N +                   W+  D  LFQ AR I      +IT  ++L  I
Sbjct  240  DELAKLNPH-------------------WS--DETLFQEARKIVIAQIQHITYNEWLPAI  278

Query  381  INLNRDNSTWNLDPRTHDDQDE--IPTAQGNQCSVEF-NLAYRW-HSTIGRQDEAWTEKT  436
            +  +  N  + L P  ++  D    P+      S EF   A+R+ HS I        E  
Sbjct  279  LGEDNMNW-FGLLPLPYNGYDPNVDPSI-----SNEFATAAFRFGHSLIPPFLYRLDENN  332

Query  437  YREIV--------GKPG--QEATLQDLMDGM-----RKFNARMDKDPSKRTFAGLQRQGN  481
              E            P    E  +  L+ G+     +  +    ++ +   F        
Sbjct  333  VPEEPSLRLHDSFFNPDRLYEGGIDPLLRGLATQPAQAVDNNFTEELTNHLF-----GPP  387

Query  482  GTFRDVDLVDILTRAIEEVSGSFGPNNVPKVLRSVEILGIQQARKWNIGSLNEFRKFFDL  541
            G F  +DL      A+                       IQ+ R   +   N++R+F  L
Sbjct  388  GEFSGLDLA-----ALN----------------------IQRGRDHGLPGYNDYREFCGL  420

Query  542  KPYESFEEINP--DPYVADQLRHLYEHPDYVELYPGIVAEEPKEPMVPG--VGIAPGYTV  597
             P +SFE++       V  +LR LY   D ++L+ G +AE+P    +PG  VG       
Sbjct  421  PPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP----LPGGLVG-----PT  471

Query  598  SRAVLSDA-VTLVRGDRFYTKEFNARNLT  625
               ++ D    L  GDRF+ +  N  + T
Sbjct  472  FACIIGDQFRRLRDGDRFWYENGNQGSFT  500



Lambda      K        H        a         alpha
   0.319    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1450691282


Query= TCONS_00029186

Length=628
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           152     3e-40


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 152 bits (386),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 124/567 (22%), Positives = 196/567 (35%), Gaps = 185/567 (33%)

Query  173  YRSADGSYNNPTLPRLGAANTEYARTTEA------SKMRPAS----MPDPGLIFDSIFAR  222
            YR+ DGS NN   P  GAA T +AR          S  R +S    +P P L+ + +FA 
Sbjct  1    YRTIDGSCNNLKNPSWGAAGTPFARLLPPAYEDGVSAPRGSSSGSPLPSPRLVSNKLFAG  60

Query  223  ETFKPHANNVSSIFFTWASLIIHDVFQT--------------------------------  250
            ++  P   N++ +   W   I HD+  T                                
Sbjct  61   DSGIPD-PNLTLLLMQWGQFIDHDLTLTPESTSPNGSSCDCCCPPENLHPPCFPIPIPPD  119

Query  251  -----------------------GYPDQSINKTSSYLDLSTLYGDNQDEQNMIRTFEDGK  287
                                   G P + IN+ +S+LD S +YG +++    +R+F  G 
Sbjct  120  DPFFSPFGVRCMPFVRSAPGCGLGNPREQINQVTSFLDGSQVYGSSEETARSLRSFSGGL  179

Query  288  IK----------------PDCFSEPRLHILPAASG-------VILIMLN----RFHNYVA  320
            +K                  C       +    +G         L  L+    R HN +A
Sbjct  180  LKVNRSDDGKELLPFDPDGPCCCNSSGGVPCFLAGDSRANENPGLTALHTLFLREHNRIA  239

Query  321  EQLAIINENGRFTKPKAEIIDPVEARLAWAKYDNDLFQTARLITCGMYINITLYDYLRTI  380
            ++LA +N +                   W+  D  LFQ AR I      +IT  ++L  I
Sbjct  240  DELAKLNPH-------------------WS--DETLFQEARKIVIAQIQHITYNEWLPAI  278

Query  381  INLNRDNSTWNLDPRTHDDQDE--IPTAQGNQCSVEF-NLAYRW-HSTIGRQDEAWTEKT  436
            +  +  N  + L P  ++  D    P+      S EF   A+R+ HS I        E  
Sbjct  279  LGEDNMNW-FGLLPLPYNGYDPNVDPSI-----SNEFATAAFRFGHSLIPPFLYRLDENN  332

Query  437  YREIV--------GKPG--QEATLQDLMDGM-----RKFNARMDKDPSKRTFAGLQRQGN  481
              E            P    E  +  L+ G+     +  +    ++ +   F        
Sbjct  333  VPEEPSLRLHDSFFNPDRLYEGGIDPLLRGLATQPAQAVDNNFTEELTNHLF-----GPP  387

Query  482  GTFRDVDLVDILTRAIEEVSGSFGPNNVPKVLRSVEILGIQQARKWNIGSLNEFRKFFDL  541
            G F  +DL      A+                       IQ+ R   +   N++R+F  L
Sbjct  388  GEFSGLDLA-----ALN----------------------IQRGRDHGLPGYNDYREFCGL  420

Query  542  KPYESFEEINP--DPYVADQLRHLYEHPDYVELYPGIVAEEPKEPMVPG--VGIAPGYTV  597
             P +SFE++       V  +LR LY   D ++L+ G +AE+P    +PG  VG       
Sbjct  421  PPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP----LPGGLVG-----PT  471

Query  598  SRAVLSDA-VTLVRGDRFYTVRDESHS  623
               ++ D    L  GDRF+       S
Sbjct  472  FACIIGDQFRRLRDGDRFWYENGNQGS  498



Lambda      K        H        a         alpha
   0.317    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789012650


Query= TCONS_00029185

Length=425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           119     6e-30


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 119 bits (301),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 107/520 (21%), Positives = 175/520 (34%), Gaps = 175/520 (34%)

Query  7    PDPGLIFDSIFARETFKPHANNVSSIFFTWASLIIHDVFQT-------------------  47
            P P L+ + +FA ++  P   N++ +   W   I HD+  T                   
Sbjct  48   PSPRLVSNKLFAGDSGIPD-PNLTLLLMQWGQFIDHDLTLTPESTSPNGSSCDCCCPPEN  106

Query  48   ------------------------------------GYPDQSINKTSSYLDLSTLYGDNQ  71
                                                G P + IN+ +S+LD S +YG ++
Sbjct  107  LHPPCFPIPIPPDDPFFSPFGVRCMPFVRSAPGCGLGNPREQINQVTSFLDGSQVYGSSE  166

Query  72   DEQNMIRTFEDGKIK----------------PDCFSEPRLHILPAASG-------VILIM  108
            +    +R+F  G +K                  C       +    +G         L  
Sbjct  167  ETARSLRSFSGGLLKVNRSDDGKELLPFDPDGPCCCNSSGGVPCFLAGDSRANENPGLTA  226

Query  109  LN----RFHNYVAEQLAIINENGRFTKPKAEIIDPVEARLAWAKYDNDLFQTARLITCGM  164
            L+    R HN +A++LA +N +                   W+  D  LFQ AR I    
Sbjct  227  LHTLFLREHNRIADELAKLNPH-------------------WS--DETLFQEARKIVIAQ  265

Query  165  YINITLYDYLRTIINLNRDNSTWNLDPRTHDDQDE--IPTAQGNQCSVEF-NLAYRW-HS  220
              +IT  ++L  I+  +  N  + L P  ++  D    P+      S EF   A+R+ HS
Sbjct  266  IQHITYNEWLPAILGEDNMNW-FGLLPLPYNGYDPNVDPSI-----SNEFATAAFRFGHS  319

Query  221  TIGRQDEAWTEKTYREIV--------GKPG--QEATLQDLMDGM-----RKFNARMDKDP  265
             I        E    E            P    E  +  L+ G+     +  +    ++ 
Sbjct  320  LIPPFLYRLDENNVPEEPSLRLHDSFFNPDRLYEGGIDPLLRGLATQPAQAVDNNFTEEL  379

Query  266  SKRTFAGLQRQGNGTFRDVDLVDILTRAIEEVSGSFGPNNVPKVLRSVEILGIQQARKWN  325
            +   F        G F  +DL      A+                       IQ+ R   
Sbjct  380  TNHLF-----GPPGEFSGLDLA-----ALN----------------------IQRGRDHG  407

Query  326  IGSLNEFRKFFDLKPYESFEEINP--DPYVADQLRHLYEHPDYVELYPGIVAEEPKEPMV  383
            +   N++R+F  L P +SFE++       V  +LR LY   D ++L+ G +AE+P    +
Sbjct  408  LPGYNDYREFCGLPPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP----L  463

Query  384  PG--VGIAPGYTVSRAVLSDA-VTLVRGDRFYTVRDESHS  420
            PG  VG          ++ D    L  GDRF+       S
Sbjct  464  PGGLVG-----PTFACIIGDQFRRLRDGDRFWYENGNQGS  498



Lambda      K        H        a         alpha
   0.319    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521922912


Query= TCONS_00034289

Length=470


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00034290

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           150     3e-40


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 150 bits (381),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 124/567 (22%), Positives = 196/567 (35%), Gaps = 185/567 (33%)

Query  41   YRSADGSYNNPTLPRLGAANTEYARTTEA------SKMRPAS----MPDPGLIFDSIFAR  90
            YR+ DGS NN   P  GAA T +AR          S  R +S    +P P L+ + +FA 
Sbjct  1    YRTIDGSCNNLKNPSWGAAGTPFARLLPPAYEDGVSAPRGSSSGSPLPSPRLVSNKLFAG  60

Query  91   ETFKPHANNVSSIFFTWASLIIHDVFQT--------------------------------  118
            ++  P   N++ +   W   I HD+  T                                
Sbjct  61   DSGIPD-PNLTLLLMQWGQFIDHDLTLTPESTSPNGSSCDCCCPPENLHPPCFPIPIPPD  119

Query  119  -----------------------GYPDQSINKTSSYLDLSTLYGDNQDEQNMIRTFEDGK  155
                                   G P + IN+ +S+LD S +YG +++    +R+F  G 
Sbjct  120  DPFFSPFGVRCMPFVRSAPGCGLGNPREQINQVTSFLDGSQVYGSSEETARSLRSFSGGL  179

Query  156  IK----------------PDCFSEPRLHILPAASG-------VILIMLN----RFHNYVA  188
            +K                  C       +    +G         L  L+    R HN +A
Sbjct  180  LKVNRSDDGKELLPFDPDGPCCCNSSGGVPCFLAGDSRANENPGLTALHTLFLREHNRIA  239

Query  189  EQLAIINENGRFTKPKAEIIDPVEARLAWAKYDNDLFQTARLITCGMYINITLYDYLRTI  248
            ++LA +N +                   W+  D  LFQ AR I      +IT  ++L  I
Sbjct  240  DELAKLNPH-------------------WS--DETLFQEARKIVIAQIQHITYNEWLPAI  278

Query  249  INLNRDNSTWNLDPRTHDDQDE--IPTAQGNQCSVEF-NLAYRW-HSTIGRQDEAWTEKT  304
            +  +  N  + L P  ++  D    P+      S EF   A+R+ HS I        E  
Sbjct  279  LGEDNMNW-FGLLPLPYNGYDPNVDPSI-----SNEFATAAFRFGHSLIPPFLYRLDENN  332

Query  305  YREIV--------GKPG--QEATLQDLMDGM-----RKFNARMDKDPSKRTFAGLQRQGN  349
              E            P    E  +  L+ G+     +  +    ++ +   F        
Sbjct  333  VPEEPSLRLHDSFFNPDRLYEGGIDPLLRGLATQPAQAVDNNFTEELTNHLF-----GPP  387

Query  350  GTFRDVDLVDILTRAIEEVSGSFGPNNVPKVLRSVEILGIQQARKWNIGSLNEFRKFFDL  409
            G F  +DL      A+                       IQ+ R   +   N++R+F  L
Sbjct  388  GEFSGLDLA-----ALN----------------------IQRGRDHGLPGYNDYREFCGL  420

Query  410  KPYESFEEINP--DPYVADQLRHLYEHPDYVELYPGIVAEEPKEPMVPG--VGIAPGYTV  465
             P +SFE++       V  +LR LY   D ++L+ G +AE+P    +PG  VG       
Sbjct  421  PPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP----LPGGLVG-----PT  471

Query  466  SRAVLSDA-VTLVRGDRFYTVRDESHS  491
               ++ D    L  GDRF+       S
Sbjct  472  FACIIGDQFRRLRDGDRFWYENGNQGS  498



Lambda      K        H        a         alpha
   0.318    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00034291

Length=425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           119     6e-30


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 119 bits (301),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 107/520 (21%), Positives = 175/520 (34%), Gaps = 175/520 (34%)

Query  7    PDPGLIFDSIFARETFKPHANNVSSIFFTWASLIIHDVFQT-------------------  47
            P P L+ + +FA ++  P   N++ +   W   I HD+  T                   
Sbjct  48   PSPRLVSNKLFAGDSGIPD-PNLTLLLMQWGQFIDHDLTLTPESTSPNGSSCDCCCPPEN  106

Query  48   ------------------------------------GYPDQSINKTSSYLDLSTLYGDNQ  71
                                                G P + IN+ +S+LD S +YG ++
Sbjct  107  LHPPCFPIPIPPDDPFFSPFGVRCMPFVRSAPGCGLGNPREQINQVTSFLDGSQVYGSSE  166

Query  72   DEQNMIRTFEDGKIK----------------PDCFSEPRLHILPAASG-------VILIM  108
            +    +R+F  G +K                  C       +    +G         L  
Sbjct  167  ETARSLRSFSGGLLKVNRSDDGKELLPFDPDGPCCCNSSGGVPCFLAGDSRANENPGLTA  226

Query  109  LN----RFHNYVAEQLAIINENGRFTKPKAEIIDPVEARLAWAKYDNDLFQTARLITCGM  164
            L+    R HN +A++LA +N +                   W+  D  LFQ AR I    
Sbjct  227  LHTLFLREHNRIADELAKLNPH-------------------WS--DETLFQEARKIVIAQ  265

Query  165  YINITLYDYLRTIINLNRDNSTWNLDPRTHDDQDE--IPTAQGNQCSVEF-NLAYRW-HS  220
              +IT  ++L  I+  +  N  + L P  ++  D    P+      S EF   A+R+ HS
Sbjct  266  IQHITYNEWLPAILGEDNMNW-FGLLPLPYNGYDPNVDPSI-----SNEFATAAFRFGHS  319

Query  221  TIGRQDEAWTEKTYREIV--------GKPG--QEATLQDLMDGM-----RKFNARMDKDP  265
             I        E    E            P    E  +  L+ G+     +  +    ++ 
Sbjct  320  LIPPFLYRLDENNVPEEPSLRLHDSFFNPDRLYEGGIDPLLRGLATQPAQAVDNNFTEEL  379

Query  266  SKRTFAGLQRQGNGTFRDVDLVDILTRAIEEVSGSFGPNNVPKVLRSVEILGIQQARKWN  325
            +   F        G F  +DL      A+                       IQ+ R   
Sbjct  380  TNHLF-----GPPGEFSGLDLA-----ALN----------------------IQRGRDHG  407

Query  326  IGSLNEFRKFFDLKPYESFEEINP--DPYVADQLRHLYEHPDYVELYPGIVAEEPKEPMV  383
            +   N++R+F  L P +SFE++       V  +LR LY   D ++L+ G +AE+P    +
Sbjct  408  LPGYNDYREFCGLPPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP----L  463

Query  384  PG--VGIAPGYTVSRAVLSDA-VTLVRGDRFYTVRDESHS  420
            PG  VG          ++ D    L  GDRF+       S
Sbjct  464  PGGLVG-----PTFACIIGDQFRRLRDGDRFWYENGNQGS  498



Lambda      K        H        a         alpha
   0.319    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521922912


Query= TCONS_00029187

Length=858
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           94.9    9e-21


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 94.9 bits (237),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 78/336 (23%), Positives = 125/336 (37%), Gaps = 92/336 (27%)

Query  36   RFHNYVAEQLAIINENGRFTKPKAEIIDPVEARLAWAKYDNDLFQTARLITCGMYINITL  95
            R HN +A++LA +N +                   W+  D  LFQ AR I      +IT 
Sbjct  233  REHNRIADELAKLNPH-------------------WS--DETLFQEARKIVIAQIQHITY  271

Query  96   YDYLRTIINLNRDNSTWNLDPRTHDDQDE--IPTAQGNQCSVEF-NLAYRW-HSTIGRQD  151
             ++L  I+  +  N  + L P  ++  D    P+      S EF   A+R+ HS I    
Sbjct  272  NEWLPAILGEDNMNW-FGLLPLPYNGYDPNVDPSI-----SNEFATAAFRFGHSLIPPFL  325

Query  152  EAWTEKTYREIV--------GKPG--QEATLQDLMDGM-----RKFNARMDKDPSKRTFA  196
                E    E            P    E  +  L+ G+     +  +    ++ +   F 
Sbjct  326  YRLDENNVPEEPSLRLHDSFFNPDRLYEGGIDPLLRGLATQPAQAVDNNFTEELTNHLF-  384

Query  197  GLQRQGNGTFRDVDLVDILTRAIEEVSGSFGPNNVPKVLRSVEILGIQQARKWNIGSLNE  256
                   G F  +DL      A+                       IQ+ R   +   N+
Sbjct  385  ----GPPGEFSGLDLA-----ALN----------------------IQRGRDHGLPGYND  413

Query  257  FRKFFDLKPYESFEEINP--DPYVADQLRHLYEHPDYVELYPGIVAEEPKEPMVPG--VG  312
            +R+F  L P +SFE++       V  +LR LY   D ++L+ G +AE+P    +PG  VG
Sbjct  414  YREFCGLPPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP----LPGGLVG  469

Query  313  IAPGYTVSRAVLSDA-VTLVRGDRFYTKEFNARNLT  347
                      ++ D    L  GDRF+ +  N  + T
Sbjct  470  -----PTFACIIGDQFRRLRDGDRFWYENGNQGSFT  500



Lambda      K        H        a         alpha
   0.321    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1095297182


Query= TCONS_00029188

Length=425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           119     6e-30


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 119 bits (301),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 107/520 (21%), Positives = 175/520 (34%), Gaps = 175/520 (34%)

Query  7    PDPGLIFDSIFARETFKPHANNVSSIFFTWASLIIHDVFQT-------------------  47
            P P L+ + +FA ++  P   N++ +   W   I HD+  T                   
Sbjct  48   PSPRLVSNKLFAGDSGIPD-PNLTLLLMQWGQFIDHDLTLTPESTSPNGSSCDCCCPPEN  106

Query  48   ------------------------------------GYPDQSINKTSSYLDLSTLYGDNQ  71
                                                G P + IN+ +S+LD S +YG ++
Sbjct  107  LHPPCFPIPIPPDDPFFSPFGVRCMPFVRSAPGCGLGNPREQINQVTSFLDGSQVYGSSE  166

Query  72   DEQNMIRTFEDGKIK----------------PDCFSEPRLHILPAASG-------VILIM  108
            +    +R+F  G +K                  C       +    +G         L  
Sbjct  167  ETARSLRSFSGGLLKVNRSDDGKELLPFDPDGPCCCNSSGGVPCFLAGDSRANENPGLTA  226

Query  109  LN----RFHNYVAEQLAIINENGRFTKPKAEIIDPVEARLAWAKYDNDLFQTARLITCGM  164
            L+    R HN +A++LA +N +                   W+  D  LFQ AR I    
Sbjct  227  LHTLFLREHNRIADELAKLNPH-------------------WS--DETLFQEARKIVIAQ  265

Query  165  YINITLYDYLRTIINLNRDNSTWNLDPRTHDDQDE--IPTAQGNQCSVEF-NLAYRW-HS  220
              +IT  ++L  I+  +  N  + L P  ++  D    P+      S EF   A+R+ HS
Sbjct  266  IQHITYNEWLPAILGEDNMNW-FGLLPLPYNGYDPNVDPSI-----SNEFATAAFRFGHS  319

Query  221  TIGRQDEAWTEKTYREIV--------GKPG--QEATLQDLMDGM-----RKFNARMDKDP  265
             I        E    E            P    E  +  L+ G+     +  +    ++ 
Sbjct  320  LIPPFLYRLDENNVPEEPSLRLHDSFFNPDRLYEGGIDPLLRGLATQPAQAVDNNFTEEL  379

Query  266  SKRTFAGLQRQGNGTFRDVDLVDILTRAIEEVSGSFGPNNVPKVLRSVEILGIQQARKWN  325
            +   F        G F  +DL      A+                       IQ+ R   
Sbjct  380  TNHLF-----GPPGEFSGLDLA-----ALN----------------------IQRGRDHG  407

Query  326  IGSLNEFRKFFDLKPYESFEEINP--DPYVADQLRHLYEHPDYVELYPGIVAEEPKEPMV  383
            +   N++R+F  L P +SFE++       V  +LR LY   D ++L+ G +AE+P    +
Sbjct  408  LPGYNDYREFCGLPPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP----L  463

Query  384  PG--VGIAPGYTVSRAVLSDA-VTLVRGDRFYTVRDESHS  420
            PG  VG          ++ D    L  GDRF+       S
Sbjct  464  PGGLVG-----PTFACIIGDQFRRLRDGDRFWYENGNQGS  498



Lambda      K        H        a         alpha
   0.319    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521922912


Query= TCONS_00029190

Length=794
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           151     3e-39


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 151 bits (383),  Expect = 3e-39, Method: Composition-based stats.
 Identities = 125/569 (22%), Positives = 199/569 (35%), Gaps = 185/569 (33%)

Query  173  YRSADGSYNNPTLPRLGAANTEYARTTEA------SKMRPAS----MPDPGLIFDSIFAR  222
            YR+ DGS NN   P  GAA T +AR          S  R +S    +P P L+ + +FA 
Sbjct  1    YRTIDGSCNNLKNPSWGAAGTPFARLLPPAYEDGVSAPRGSSSGSPLPSPRLVSNKLFAG  60

Query  223  ETFKPHANNVSSIFFTWASLIIHDVFQT--------------------------------  250
            ++  P   N++ +   W   I HD+  T                                
Sbjct  61   DSGIPD-PNLTLLLMQWGQFIDHDLTLTPESTSPNGSSCDCCCPPENLHPPCFPIPIPPD  119

Query  251  -----------------------GYPDQSINKTSSYLDLSTLYGDNQDEQNMIRTFEDGK  287
                                   G P + IN+ +S+LD S +YG +++    +R+F  G 
Sbjct  120  DPFFSPFGVRCMPFVRSAPGCGLGNPREQINQVTSFLDGSQVYGSSEETARSLRSFSGGL  179

Query  288  IK----------------PDCFSEPRLHILPAASG-------VILIMLN----RFHNYVA  320
            +K                  C       +    +G         L  L+    R HN +A
Sbjct  180  LKVNRSDDGKELLPFDPDGPCCCNSSGGVPCFLAGDSRANENPGLTALHTLFLREHNRIA  239

Query  321  EQLAIINENGRFTKPKAEIIDPVEARLAWAKYDNDLFQTARLITCGMYINITLYDYLRTI  380
            ++LA +N +                   W+  D  LFQ AR I      +IT  ++L  I
Sbjct  240  DELAKLNPH-------------------WS--DETLFQEARKIVIAQIQHITYNEWLPAI  278

Query  381  INLNRDNSTWNLDPRTHDDQDE--IPTAQGNQCSVEF-NLAYRW-HSTIGRQDEAWTEKT  436
            +  +  N  + L P  ++  D    P+      S EF   A+R+ HS I        E  
Sbjct  279  LGEDNMNW-FGLLPLPYNGYDPNVDPSI-----SNEFATAAFRFGHSLIPPFLYRLDENN  332

Query  437  YREIV--------GKPG--QEATLQDLMDGM-----RKFNARMDKDPSKRTFAGLQRQGN  481
              E            P    E  +  L+ G+     +  +    ++ +   F        
Sbjct  333  VPEEPSLRLHDSFFNPDRLYEGGIDPLLRGLATQPAQAVDNNFTEELTNHLF-----GPP  387

Query  482  GTFRDVDLVDILTRAIEEVSGSFGPNNVPKVLRSVEILGIQQARKWNIGSLNEFRKFFDL  541
            G F  +DL      A+                       IQ+ R   +   N++R+F  L
Sbjct  388  GEFSGLDLA-----ALN----------------------IQRGRDHGLPGYNDYREFCGL  420

Query  542  KPYESFEEINP--DPYVADQLRHLYEHPDYVELYPGIVAEEPKEPMVPG--VGIAPGYTV  597
             P +SFE++       V  +LR LY   D ++L+ G +AE+P    +PG  VG       
Sbjct  421  PPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP----LPGGLVG-----PT  471

Query  598  SRAVLSDA-VTLVRGDRFYTKEFNARNLT  625
               ++ D    L  GDRF+ +  N  + T
Sbjct  472  FACIIGDQFRRLRDGDRFWYENGNQGSFT  500



Lambda      K        H        a         alpha
   0.318    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1018606400


Query= TCONS_00029189

Length=766
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           145     2e-37


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 145 bits (369),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 115/529 (22%), Positives = 184/529 (35%), Gaps = 177/529 (33%)

Query  173  YRSADGSYNNPTLPRLGAANTEYARTTEA------SKMRPAS----MPDPGLIFDSIFAR  222
            YR+ DGS NN   P  GAA T +AR          S  R +S    +P P L+ + +FA 
Sbjct  1    YRTIDGSCNNLKNPSWGAAGTPFARLLPPAYEDGVSAPRGSSSGSPLPSPRLVSNKLFAG  60

Query  223  ETFKPHANNVSSIFFTWASLIIHDVFQT--------------------------------  250
            ++  P   N++ +   W   I HD+  T                                
Sbjct  61   DSGIPD-PNLTLLLMQWGQFIDHDLTLTPESTSPNGSSCDCCCPPENLHPPCFPIPIPPD  119

Query  251  -----------------------GYPDQSINKTSSYLDLSTLYGDNQDEQNMIRTFEDGK  287
                                   G P + IN+ +S+LD S +YG +++    +R+F  G 
Sbjct  120  DPFFSPFGVRCMPFVRSAPGCGLGNPREQINQVTSFLDGSQVYGSSEETARSLRSFSGGL  179

Query  288  IK----------------PDCFSEPRLHILPAASG-------VILIMLN----RFHNYVA  320
            +K                  C       +    +G         L  L+    R HN +A
Sbjct  180  LKVNRSDDGKELLPFDPDGPCCCNSSGGVPCFLAGDSRANENPGLTALHTLFLREHNRIA  239

Query  321  EQLAIINENGRFTKPKAEIIDPVEARLAWAKYDNDLFQTARLITCGMYINITLYDYLRTI  380
            ++LA +N +                   W+  D  LFQ AR I      +IT  ++L  I
Sbjct  240  DELAKLNPH-------------------WS--DETLFQEARKIVIAQIQHITYNEWLPAI  278

Query  381  INLNRDNSTWNLDPRTHDDQDE--IPTAQGNQCSVEF-NLAYRW-HSTIGRQDEAWTEKT  436
            +  +  N  + L P  ++  D    P+      S EF   A+R+ HS I        E  
Sbjct  279  LGEDNMNW-FGLLPLPYNGYDPNVDPSI-----SNEFATAAFRFGHSLIPPFLYRLDENN  332

Query  437  YREIV--------GKPG--QEATLQDLMDGM-----RKFNARMDKDPSKRTFAGLQRQGN  481
              E            P    E  +  L+ G+     +  +    ++ +   F        
Sbjct  333  VPEEPSLRLHDSFFNPDRLYEGGIDPLLRGLATQPAQAVDNNFTEELTNHLF-----GPP  387

Query  482  GTFRDVDLVDILTRAIEEVSGSFGPNNVPKVLRSVEILGIQQARKWNIGSLNEFRKFFDL  541
            G F  +DL      A+                       IQ+ R   +   N++R+F  L
Sbjct  388  GEFSGLDLA-----ALN----------------------IQRGRDHGLPGYNDYREFCGL  420

Query  542  KPYESFEEINP--DPYVADQLRHLYEHPDYVELYPGIVAEEPKEPMVPG  588
             P +SFE++       V  +LR LY   D ++L+ G +AE+P    +PG
Sbjct  421  PPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP----LPG  465



Lambda      K        H        a         alpha
   0.318    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0756    0.140     1.90     42.6     43.6 

Effective search space used: 977862144


Query= TCONS_00029191

Length=830
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           89.9    4e-19


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 89.9 bits (224),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 68/296 (23%), Positives = 110/296 (37%), Gaps = 84/296 (28%)

Query  36   RFHNYVAEQLAIINENGRFTKPKAEIIDPVEARLAWAKYDNDLFQTARLITCGMYINITL  95
            R HN +A++LA +N +                   W+  D  LFQ AR I      +IT 
Sbjct  233  REHNRIADELAKLNPH-------------------WS--DETLFQEARKIVIAQIQHITY  271

Query  96   YDYLRTIINLNRDNSTWNLDPRTHDDQDE--IPTAQGNQCSVEF-NLAYRW-HSTIGRQD  151
             ++L  I+  +  N  + L P  ++  D    P+      S EF   A+R+ HS I    
Sbjct  272  NEWLPAILGEDNMNW-FGLLPLPYNGYDPNVDPSI-----SNEFATAAFRFGHSLIPPFL  325

Query  152  EAWTEKTYREIV--------GKPG--QEATLQDLMDGM-----RKFNARMDKDPSKRTFA  196
                E    E            P    E  +  L+ G+     +  +    ++ +   F 
Sbjct  326  YRLDENNVPEEPSLRLHDSFFNPDRLYEGGIDPLLRGLATQPAQAVDNNFTEELTNHLF-  384

Query  197  GLQRQGNGTFRDVDLVDILTRAIEEVSGSFGPNNVPKVLRSVEILGIQQARKWNIGSLNE  256
                   G F  +DL      A+                       IQ+ R   +   N+
Sbjct  385  ----GPPGEFSGLDLA-----ALN----------------------IQRGRDHGLPGYND  413

Query  257  FRKFFDLKPYESFEEINP--DPYVADQLRHLYEHPDYVELYPGIVAEEPKEPMVPG  310
            +R+F  L P +SFE++       V  +LR LY   D ++L+ G +AE+P    +PG
Sbjct  414  YREFCGLPPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP----LPG  465



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1055102790


Query= TCONS_00029194

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00029192

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00029193

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00029197

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00029195

Length=283


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00034292

Length=319


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00029196

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00034293

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  162     7e-47
CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  143     3e-41


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 162 bits (412),  Expect = 7e-47, Method: Composition-based stats.
 Identities = 70/168 (42%), Positives = 90/168 (54%), Gaps = 8/168 (5%)

Query  1    MHRLALMTAYEALEQAGFVPNRTESTHLKRIGTFYGQSCDDYRE----ANAGQEVDTY-Y  55
              RL L  A+EALE AG  P+  + +   R G F G    DY         G       +
Sbjct  87   QQRLLLEAAWEALEDAGITPDSLDGS---RTGVFIGSGIGDYAALLLLDEDGGPRRGSPF  143

Query  56   IPGGCRAFAPGRINYFFKFSGPSFDCDTACSSSLATIQMACTSLQHGDTNMAVAGGLNIL  115
              G   +   GRI+YF    GPS   DTACSSSL  I  A  S++ G+ ++A+AGG+N+L
Sbjct  144  AVGTMPSVIAGRISYFLGLRGPSVTVDTACSSSLVAIHAAVQSIRSGEADVALAGGVNLL  203

Query  116  TNSDGFAGLSRGHFLSKTGGCKTFDCNADGYCRADGIGSIVLKRLDDA  163
                GFAG S    LS  G CK FD  ADG+ R +G+G++VLKRL DA
Sbjct  204  LTPLGFAGFSAAGMLSPDGPCKAFDPFADGFVRGEGVGAVVLKRLSDA  251


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 143 bits (362),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 54/120 (45%), Positives = 71/120 (59%), Gaps = 2/120 (2%)

Query  171  FGIILAAATNHSARAISITHPHAPSQAELYRDILTRAGVSPLDVDFIEMHGTGTQAGDST  230
            + +I  +A NH  R   +T P+   QA   R  L  AGV P DVD++E HGTGT  GD  
Sbjct  1    YAVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDPEDVDYVEAHGTGTPLGDPI  60

Query  231  EMESITSVFSPGVPKRSRPLYIGSVKANVGHGEAAAGVMSLIKVLLVLQRQAIPKHVGIK  290
            E E++  VF  G   R +PL IGSVK+N+GH E AAG   LIKV+L L+   IP  + ++
Sbjct  61   EAEALKRVFGSG--ARKQPLAIGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTLNLE  118



Lambda      K        H        a         alpha
   0.320    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00029199

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-te...  243     9e-78
CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-...  145     2e-42


>CDD:425468 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains. The N-terminal domain 
contains most of the structures involved in dimer formation 
and also the active site cysteine.
Length=251

 Score = 243 bits (622),  Expect = 9e-78, Method: Composition-based stats.
 Identities = 108/256 (42%), Positives = 140/256 (55%), Gaps = 10/256 (4%)

Query  121  SSIAIVGMACRFPGGANDLNQFWDLLEQGADVHRRVPADRYDVESHTDTSGKSRNTSLTP  180
              +AIVGM CRFPGG ND  +FW+ L +G D    +PADR+D +   D   +      T 
Sbjct  1    EPVAIVGMGCRFPGG-NDPEEFWENLLEGRDGISEIPADRWDPDKLYDPPSRIAGKIYTK  59

Query  181  FGCFIDQPGLFDAGFFDMSPREAMQTDPMHRLALMTAYEALEQAGFVPNRTESTHLKRIG  240
            +G  +D    FD  FF +SPREA + DP  RL L  A+EALE AG  P+  + +   R G
Sbjct  60   WGG-LDDIFDFDPLFFGISPREAERMDPQQRLLLEAAWEALEDAGITPDSLDGS---RTG  115

Query  241  TFYGQSCDDYRE----ANAGQEVDTY-YIPGGCRAFAPGRINYFFKFSGPSFDCDTACSS  295
             F G    DY         G       +  G   +   GRI+YF    GPS   DTACSS
Sbjct  116  VFIGSGIGDYAALLLLDEDGGPRRGSPFAVGTMPSVIAGRISYFLGLRGPSVTVDTACSS  175

Query  296  SLATIQMACTSLQHGDTNMAVAGGLNILTNSDGFAGLSRGHFLSKTGGCKTFDCNADGYC  355
            SL  I  A  S++ G+ ++A+AGG+N+L    GFAG S    LS  G CK FD  ADG+ 
Sbjct  176  SLVAIHAAVQSIRSGEADVALAGGVNLLLTPLGFAGFSAAGMLSPDGPCKAFDPFADGFV  235

Query  356  RADGIGSIVLKRLDDA  371
            R +G+G++VLKRL DA
Sbjct  236  RGEGVGAVVLKRLSDA  251


>CDD:426989 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal 
domain.  The structure of beta-ketoacyl synthase is similar 
to that of the thiolase family (pfam00108) and also chalcone 
synthase. The active site of beta-ketoacyl synthase is located 
between the N and C-terminal domains.
Length=118

 Score = 145 bits (369),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 54/120 (45%), Positives = 71/120 (59%), Gaps = 2/120 (2%)

Query  379  FGIILAAATNHSARAISITHPHAPSQAELYRDILTRAGVSPLDVDFIEMHGTGTQAGDST  438
            + +I  +A NH  R   +T P+   QA   R  L  AGV P DVD++E HGTGT  GD  
Sbjct  1    YAVIKGSAVNHDGRHNGLTAPNGEGQARAIRRALADAGVDPEDVDYVEAHGTGTPLGDPI  60

Query  439  EMESITSVFSPGVPKRSRPLYIGSVKANVGHGEAAAGVMSLIKVLLVLQRQAIPKHVGIK  498
            E E++  VF  G   R +PL IGSVK+N+GH E AAG   LIKV+L L+   IP  + ++
Sbjct  61   EAEALKRVFGSG--ARKQPLAIGSVKSNIGHLEGAAGAAGLIKVVLALRHGVIPPTLNLE  118



Lambda      K        H        a         alpha
   0.321    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00029200

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00029201

Length=194
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397334 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfam...  95.6    2e-26


>CDD:397334 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily.  This 
family contains members of the 2-oxoglutarate (2OG) and 
Fe(II)-dependent oxygenase superfamily. This family includes 
the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme 
has the activity EC:1.14.11.2 catalyzing the reaction: 
Procollagen L-proline + 2-oxoglutarate + O2 <=> procollagen 
trans- 4-hydroxy-L-proline + succinate + CO2. The full 
enzyme consists of a alpha2 beta2 complex with the alpha subunit 
contributing most of the parts of the active site. The 
family also includes lysyl hydrolases, isopenicillin synthases 
and AlkB.
Length=101

 Score = 95.6 bits (238),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 48/120 (40%), Positives = 62/120 (52%), Gaps = 26/120 (22%)

Query  19   LRYLHYPPQPVGDAEAGLGTGAHRDYSCITLLLQDGTGGLQVLDEPTGQWLDVRCSLSNG  78
            L   +YPP P  D +  LG G H D S +T+LLQD  GGLQV  +  G+W+D        
Sbjct  5    LVLNYYPPHP--DPDLTLGLGPHTDASILTILLQDDVGGLQVFKD--GKWID--------  52

Query  79   NLVQCVAYSCNLQVKPVPGAYIVNLANVFARMTNGHYKSALHRVV-NKSGMERYSIPFFF  137
                         V P+PGA +VN+ +    ++NG YKS LHRV+    G ER SI FF 
Sbjct  53   -------------VPPLPGALVVNIGDQLELLSNGRYKSVLHRVLPVNKGKERISIAFFL  99



Lambda      K        H        a         alpha
   0.320    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00029202

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.144    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00029204

Length=1124


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1433936426


Query= TCONS_00029205

Length=241


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00034295

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   127     3e-36
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  104     2e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 127 bits (322),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 53/141 (38%), Positives = 83/141 (59%), Gaps = 4/141 (3%)

Query  3    ANRPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTFDRERYSPV  62
            A  PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  DR    PV
Sbjct  62   AKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVLDRASKGPV  121

Query  63   ILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEMPTIESIIR  118
            I+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +     II+
Sbjct  122  IIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELIKQAADIIK  181

Query  119  QMIKLFEERDAILLELNPLVR  139
            ++ KLF E DA L+E+NPLV 
Sbjct  182  KLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 104 bits (262),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  198  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  256
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  257  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  310
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  311  LEKAAKRI  318
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.322    0.138    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00034294

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   139     1e-40
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  103     6e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 139 bits (352),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 56/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query  5    GK-GGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  63
            GK GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  54   GKAGGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  64   DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  119
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  120  PTIESIIRQMIKLFEERDAILLELNPLVR  148
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 103 bits (260),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  207  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  265
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  266  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  319
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  320  LEKAAKRI  327
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.321    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00034297

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   139     1e-40
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  103     6e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 139 bits (352),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 56/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query  5    GK-GGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  63
            GK GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  54   GKAGGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  64   DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  119
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  120  PTIESIIRQMIKLFEERDAILLELNPLVR  148
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 103 bits (260),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  207  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  265
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  266  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  319
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  320  LEKAAKRI  327
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.321    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00034296

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   199     4e-63
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  104     1e-27


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 199 bits (509),  Expect = 4e-63, Method: Composition-based stats.
 Identities = 79/209 (38%), Positives = 126/209 (60%), Gaps = 12/209 (6%)

Query  25   SLLEHHSHKLLEQYSIPVPRGYVVTNPGDAEAVVSSIGAP-SVLKSQILAGGRGKGKMSS  83
            +L E+ + ++  +Y IPVPRG V T+P +AE +   +G    V+K+Q+LAGGRGK     
Sbjct  1    NLHEYQAKEIFAKYGIPVPRGEVATSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKA----  56

Query  84   DGKGGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  143
               GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  57   ---GGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  144  DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  199
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  200  PTIESIIRQMIKLFEERDAILLELNPLVR  228
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 104 bits (261),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  287  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  345
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  346  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  399
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  400  LEKAAKRI  407
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.321    0.137    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00029206

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   199     4e-63
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  104     1e-27


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 199 bits (509),  Expect = 4e-63, Method: Composition-based stats.
 Identities = 79/209 (38%), Positives = 126/209 (60%), Gaps = 12/209 (6%)

Query  25   SLLEHHSHKLLEQYSIPVPRGYVVTNPGDAEAVVSSIGAP-SVLKSQILAGGRGKGKMSS  83
            +L E+ + ++  +Y IPVPRG V T+P +AE +   +G    V+K+Q+LAGGRGK     
Sbjct  1    NLHEYQAKEIFAKYGIPVPRGEVATSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKA----  56

Query  84   DGKGGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  143
               GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  57   ---GGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  144  DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  199
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  200  PTIESIIRQMIKLFEERDAILLELNPLVR  228
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 104 bits (261),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  287  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  345
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  346  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  399
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  400  LEKAAKRI  407
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.321    0.137    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00034298

Length=818
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  93.0    4e-23
CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  89.7    5e-22
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  71.9    4e-16


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 93.0 bits (232),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 46/128 (36%), Positives = 64/128 (50%), Gaps = 17/128 (13%)

Query  687  VLLVDDNDVNLKLLVAFMKKAKFPYYTASNGLEALEVYKANAGYIPVVLMDISMPVMDGL  746
            VL+VDD+ +  +LL   ++K  +    A +G EALE+ K       ++L+DI+MP MDGL
Sbjct  1    VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLKEER--PDLILLDINMPGMDGL  58

Query  747  EATREIRLFEKMHREGSTNAGHSCFKPTTVIVLSGLGSAPVRQEAFNSGIDLFLSKPIRF  806
            E  + IR      R   T         T VI+L+  G      EA  +G D FLSKP   
Sbjct  59   ELLKRIR------RRDPT---------TPVIILTAHGDEDDAVEALEAGADDFLSKPFDP  103

Query  807  QELVKQID  814
             EL+  I 
Sbjct  104  DELLAAIR  111


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 89.7 bits (223),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 49/125 (39%), Positives = 65/125 (52%), Gaps = 24/125 (19%)

Query  336  RRILMNLFGNALKYT-QSGYISVTLRCSSTPSNAKMKRLARGDGTREGMGSVTLTVRDTG  394
            R++L NL  NALK+  ++G I+VTL                        G +TLTV D G
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEG---------------------GELTLTVEDNG  45

Query  395  QGIDKQYLQSNVFKPFSQEDPLS-PGSGLGLSIVHQTVVSLGGKVDITSTKGIGTEVTVT  453
             GI  + L   +F+PFS  D     G+GLGLSIV + V  LGG + + S  G GT VT+T
Sbjct  46   IGIPPEDLP-RIFEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLT  104

Query  454  LDLPR  458
            L L +
Sbjct  105  LPLAQ  109


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 71.9 bits (177),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 24/65 (37%), Positives = 36/65 (55%), Gaps = 0/65 (0%)

Query  148  AHATLVGSISHELRSPLHGILGSTELLTDSTMKPAQVALVNTIEHCGRSLLDIINNMLDF  207
            A +  + ++SHELR+PL  I G  ELL D  +   Q   + TI      LL +IN++LD 
Sbjct  1    AKSEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQREYLETILRSAERLLRLINDLLDL  60

Query  208  AKINQ  212
            ++I  
Sbjct  61   SRIEA  65



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1037876622


Query= TCONS_00029210

Length=314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   128     1e-36
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  103     4e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 128 bits (324),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 53/141 (38%), Positives = 83/141 (59%), Gaps = 4/141 (3%)

Query  3    ANRPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTFDRERYSPV  62
            A  PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  DR    PV
Sbjct  62   AKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVLDRASKGPV  121

Query  63   ILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEMPTIESIIR  118
            I+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +     II+
Sbjct  122  IIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELIKQAADIIK  181

Query  119  QMIKLFEERDAILLELNPLVR  139
            ++ KLF E DA L+E+NPLV 
Sbjct  182  KLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 103 bits (260),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 36/96 (38%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query  198  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  256
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  257  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD  292
            G   C+  A  +++A        +PVV R+ GT  D
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEAD  96



Lambda      K        H        a         alpha
   0.323    0.138    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00029209

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   139     8e-41
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  103     9e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 139 bits (353),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 56/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query  5    GK-GGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  63
            GK GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  54   GKAGGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  64   DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  119
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  120  PTIESIIRQMIKLFEERDAILLELNPLVR  148
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 103 bits (258),  Expect = 9e-28, Method: Composition-based stats.
 Identities = 36/96 (38%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query  207  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  265
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  266  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD  301
            G   C+  A  +++A        +PVV R+ GT  D
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEAD  96



Lambda      K        H        a         alpha
   0.322    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00029208

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   139     8e-41
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  103     9e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 139 bits (353),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 56/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query  5    GK-GGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  63
            GK GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  54   GKAGGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  64   DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  119
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  120  PTIESIIRQMIKLFEERDAILLELNPLVR  148
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 103 bits (258),  Expect = 9e-28, Method: Composition-based stats.
 Identities = 36/96 (38%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query  207  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  265
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  266  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD  301
            G   C+  A  +++A        +PVV R+ GT  D
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEAD  96



Lambda      K        H        a         alpha
   0.322    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00029207

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   139     1e-40
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  103     6e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 139 bits (352),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 56/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query  5    GK-GGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  63
            GK GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  54   GKAGGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  64   DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  119
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  120  PTIESIIRQMIKLFEERDAILLELNPLVR  148
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 103 bits (260),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  207  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  265
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  266  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  319
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  320  LEKAAKRI  327
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.321    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00034300

Length=271
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   140     1e-41
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  70.4    7e-16


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 140 bits (355),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 56/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query  5    GK-GGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  63
            GK GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  54   GKAGGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  64   DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  119
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  120  PTIESIIRQMIKLFEERDAILLELNPLVR  148
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 70.4 bits (173),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 26/61 (43%), Positives = 37/61 (61%), Gaps = 1/61 (2%)

Query  207  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  265
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  266  G  266
            G
Sbjct  61   G  61



Lambda      K        H        a         alpha
   0.321    0.139    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00034299

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   127     3e-36
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  104     2e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 127 bits (322),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 53/141 (38%), Positives = 83/141 (59%), Gaps = 4/141 (3%)

Query  3    ANRPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTFDRERYSPV  62
            A  PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  DR    PV
Sbjct  62   AKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVLDRASKGPV  121

Query  63   ILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEMPTIESIIR  118
            I+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +     II+
Sbjct  122  IIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELIKQAADIIK  181

Query  119  QMIKLFEERDAILLELNPLVR  139
            ++ KLF E DA L+E+NPLV 
Sbjct  182  KLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 104 bits (262),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  198  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  256
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  257  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  310
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  311  LEKAAKRI  318
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.322    0.138    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0781    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00029213

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   139     1e-40
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  103     6e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 139 bits (352),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 56/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query  5    GK-GGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  63
            GK GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  54   GKAGGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  64   DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  119
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  120  PTIESIIRQMIKLFEERDAILLELNPLVR  148
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 103 bits (260),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  207  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  265
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  266  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  319
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  320  LEKAAKRI  327
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.321    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00029212

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   139     1e-40
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  103     6e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 139 bits (352),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 56/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query  5    GK-GGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  63
            GK GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  54   GKAGGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  64   DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  119
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  120  PTIESIIRQMIKLFEERDAILLELNPLVR  148
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 103 bits (260),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  207  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  265
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  266  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  319
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  320  LEKAAKRI  327
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.321    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00029214

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   179     2e-55
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  103     3e-27


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 179 bits (457),  Expect = 2e-55, Method: Composition-based stats.
 Identities = 74/192 (39%), Positives = 115/192 (60%), Gaps = 12/192 (6%)

Query  36   VPRGYVVTNPGDAEAVVSSIGAP-SVLKSQILAGGRGKGKMSSDGKGGIRIVATPEQAFQ  94
            VPRG V T+P +AE +   +G    V+K+Q+LAGGRGK        GG+++  +PE+A +
Sbjct  18   VPRGEVATSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKA-------GGVKLAKSPEEAKE  70

Query  95   NASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTFDRERYSPVILISDQGGV  154
             A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  DR    PVI+ S +GGV
Sbjct  71   VAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVLDRASKGPVIIASTEGGV  130

Query  155  NIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEMPTIESIIRQMIKLFEER  210
            +IE     N +K+H+F  +  +G+T      I  +     + +     II+++ KLF E 
Sbjct  131  DIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELIKQAADIIKKLYKLFVEY  190

Query  211  DAILLELNPLVR  222
            DA L+E+NPLV 
Sbjct  191  DATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 103 bits (258),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  281  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  339
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  340  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  393
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  394  LEKAAKRI  401
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.319    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00034301

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   128     1e-36
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  79.6    5e-19


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 128 bits (324),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 53/141 (38%), Positives = 83/141 (59%), Gaps = 4/141 (3%)

Query  3    ANRPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTFDRERYSPV  62
            A  PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  DR    PV
Sbjct  62   AKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVLDRASKGPV  121

Query  63   ILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEMPTIESIIR  118
            I+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +     II+
Sbjct  122  IIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELIKQAADIIK  181

Query  119  QMIKLFEERDAILLELNPLVR  139
            ++ KLF E DA L+E+NPLV 
Sbjct  182  KLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 79.6 bits (197),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 22/128 (17%)

Query  198  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIF-  255
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  256  --GAHT------------LGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  295
              GA                   +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  296  LEKAAKRI  303
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.321    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00029215

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   139     1e-40
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  103     6e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 139 bits (352),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 56/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query  5    GK-GGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  63
            GK GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  54   GKAGGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  64   DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  119
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  120  PTIESIIRQMIKLFEERDAILLELNPLVR  148
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 103 bits (260),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  207  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  265
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  266  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  319
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  320  LEKAAKRI  327
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.321    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00029216

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   127     3e-36
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  104     2e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 127 bits (322),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 53/141 (38%), Positives = 83/141 (59%), Gaps = 4/141 (3%)

Query  3    ANRPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTFDRERYSPV  62
            A  PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  DR    PV
Sbjct  62   AKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVLDRASKGPV  121

Query  63   ILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEMPTIESIIR  118
            I+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +     II+
Sbjct  122  IIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELIKQAADIIK  181

Query  119  QMIKLFEERDAILLELNPLVR  139
            ++ KLF E DA L+E+NPLV 
Sbjct  182  KLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 104 bits (262),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  198  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  256
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  257  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  310
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  311  LEKAAKRI  318
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.322    0.138    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00034303

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   127     3e-36
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  104     2e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 127 bits (322),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 53/141 (38%), Positives = 83/141 (59%), Gaps = 4/141 (3%)

Query  3    ANRPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTFDRERYSPV  62
            A  PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  DR    PV
Sbjct  62   AKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVLDRASKGPV  121

Query  63   ILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEMPTIESIIR  118
            I+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +     II+
Sbjct  122  IIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELIKQAADIIK  181

Query  119  QMIKLFEERDAILLELNPLVR  139
            ++ KLF E DA L+E+NPLV 
Sbjct  182  KLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 104 bits (262),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  198  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  256
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  257  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  310
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  311  LEKAAKRI  318
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.322    0.138    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00034302

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   139     1e-40
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  103     6e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 139 bits (352),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 56/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query  5    GK-GGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  63
            GK GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  54   GKAGGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  64   DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  119
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  120  PTIESIIRQMIKLFEERDAILLELNPLVR  148
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 103 bits (260),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  207  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  265
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  266  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  319
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  320  LEKAAKRI  327
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.321    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00029211

Length=262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   128     3e-37
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  71.1    4e-16


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 128 bits (325),  Expect = 3e-37, Method: Composition-based stats.
 Identities = 53/141 (38%), Positives = 83/141 (59%), Gaps = 4/141 (3%)

Query  3    ANRPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTFDRERYSPV  62
            A  PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  DR    PV
Sbjct  62   AKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVLDRASKGPV  121

Query  63   ILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEMPTIESIIR  118
            I+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +     II+
Sbjct  122  IIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELIKQAADIIK  181

Query  119  QMIKLFEERDAILLELNPLVR  139
            ++ KLF E DA L+E+NPLV 
Sbjct  182  KLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 71.1 bits (175),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 26/61 (43%), Positives = 37/61 (61%), Gaps = 1/61 (2%)

Query  198  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  256
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  257  G  257
            G
Sbjct  61   G  61



Lambda      K        H        a         alpha
   0.322    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00029218

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   199     4e-63
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  104     1e-27


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 199 bits (509),  Expect = 4e-63, Method: Composition-based stats.
 Identities = 79/209 (38%), Positives = 126/209 (60%), Gaps = 12/209 (6%)

Query  25   SLLEHHSHKLLEQYSIPVPRGYVVTNPGDAEAVVSSIGAP-SVLKSQILAGGRGKGKMSS  83
            +L E+ + ++  +Y IPVPRG V T+P +AE +   +G    V+K+Q+LAGGRGK     
Sbjct  1    NLHEYQAKEIFAKYGIPVPRGEVATSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKA----  56

Query  84   DGKGGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  143
               GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  57   ---GGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  144  DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  199
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  200  PTIESIIRQMIKLFEERDAILLELNPLVR  228
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 104 bits (261),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  287  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  345
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  346  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  399
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  400  LEKAAKRI  407
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.321    0.137    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00029217

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   139     1e-40
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  103     6e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 139 bits (352),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 56/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query  5    GK-GGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  63
            GK GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  54   GKAGGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  64   DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  119
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  120  PTIESIIRQMIKLFEERDAILLELNPLVR  148
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 103 bits (260),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  207  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  265
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  266  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  319
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  320  LEKAAKRI  327
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.321    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00029219

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   139     1e-40
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  103     6e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 139 bits (352),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 56/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query  5    GK-GGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  63
            GK GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  54   GKAGGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  64   DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  119
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  120  PTIESIIRQMIKLFEERDAILLELNPLVR  148
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 103 bits (260),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  207  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  265
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  266  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  319
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  320  LEKAAKRI  327
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.321    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00034304

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   200     4e-64
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  70.4    2e-15


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 200 bits (511),  Expect = 4e-64, Method: Composition-based stats.
 Identities = 79/209 (38%), Positives = 126/209 (60%), Gaps = 12/209 (6%)

Query  25   SLLEHHSHKLLEQYSIPVPRGYVVTNPGDAEAVVSSIGAP-SVLKSQILAGGRGKGKMSS  83
            +L E+ + ++  +Y IPVPRG V T+P +AE +   +G    V+K+Q+LAGGRGK     
Sbjct  1    NLHEYQAKEIFAKYGIPVPRGEVATSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKA----  56

Query  84   DGKGGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  143
               GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  57   ---GGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  144  DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  199
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  200  PTIESIIRQMIKLFEERDAILLELNPLVR  228
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 70.4 bits (173),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 26/61 (43%), Positives = 37/61 (61%), Gaps = 1/61 (2%)

Query  287  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  345
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  346  G  346
            G
Sbjct  61   G  61



Lambda      K        H        a         alpha
   0.321    0.138    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00034305

Length=271
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   140     1e-41
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  70.4    7e-16


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 140 bits (355),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 56/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query  5    GK-GGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  63
            GK GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  54   GKAGGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  64   DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  119
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  120  PTIESIIRQMIKLFEERDAILLELNPLVR  148
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 70.4 bits (173),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 26/61 (43%), Positives = 37/61 (61%), Gaps = 1/61 (2%)

Query  207  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  265
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  266  G  266
            G
Sbjct  61   G  61



Lambda      K        H        a         alpha
   0.321    0.139    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00034306

Length=818
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  93.0    4e-23
CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  89.7    5e-22
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  71.9    4e-16


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 93.0 bits (232),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 46/128 (36%), Positives = 64/128 (50%), Gaps = 17/128 (13%)

Query  687  VLLVDDNDVNLKLLVAFMKKAKFPYYTASNGLEALEVYKANAGYIPVVLMDISMPVMDGL  746
            VL+VDD+ +  +LL   ++K  +    A +G EALE+ K       ++L+DI+MP MDGL
Sbjct  1    VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLKEER--PDLILLDINMPGMDGL  58

Query  747  EATREIRLFEKMHREGSTNAGHSCFKPTTVIVLSGLGSAPVRQEAFNSGIDLFLSKPIRF  806
            E  + IR      R   T         T VI+L+  G      EA  +G D FLSKP   
Sbjct  59   ELLKRIR------RRDPT---------TPVIILTAHGDEDDAVEALEAGADDFLSKPFDP  103

Query  807  QELVKQID  814
             EL+  I 
Sbjct  104  DELLAAIR  111


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 89.7 bits (223),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 49/125 (39%), Positives = 65/125 (52%), Gaps = 24/125 (19%)

Query  336  RRILMNLFGNALKYT-QSGYISVTLRCSSTPSNAKMKRLARGDGTREGMGSVTLTVRDTG  394
            R++L NL  NALK+  ++G I+VTL                        G +TLTV D G
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEG---------------------GELTLTVEDNG  45

Query  395  QGIDKQYLQSNVFKPFSQEDPLS-PGSGLGLSIVHQTVVSLGGKVDITSTKGIGTEVTVT  453
             GI  + L   +F+PFS  D     G+GLGLSIV + V  LGG + + S  G GT VT+T
Sbjct  46   IGIPPEDLP-RIFEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLT  104

Query  454  LDLPR  458
            L L +
Sbjct  105  LPLAQ  109


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 71.9 bits (177),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 24/65 (37%), Positives = 36/65 (55%), Gaps = 0/65 (0%)

Query  148  AHATLVGSISHELRSPLHGILGSTELLTDSTMKPAQVALVNTIEHCGRSLLDIINNMLDF  207
            A +  + ++SHELR+PL  I G  ELL D  +   Q   + TI      LL +IN++LD 
Sbjct  1    AKSEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQREYLETILRSAERLLRLINDLLDL  60

Query  208  AKINQ  212
            ++I  
Sbjct  61   SRIEA  65



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1037876622


Query= TCONS_00029220

Length=271
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   140     1e-41
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  70.4    7e-16


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 140 bits (355),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 56/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query  5    GK-GGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  63
            GK GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  54   GKAGGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  64   DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  119
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  120  PTIESIIRQMIKLFEERDAILLELNPLVR  148
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 70.4 bits (173),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 26/61 (43%), Positives = 37/61 (61%), Gaps = 1/61 (2%)

Query  207  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  265
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  266  G  266
            G
Sbjct  61   G  61



Lambda      K        H        a         alpha
   0.321    0.139    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00034307

Length=314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   139     8e-41
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  102     1e-27


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 139 bits (352),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 56/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query  5    GK-GGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  63
            GK GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  54   GKAGGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  64   DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  119
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  120  PTIESIIRQMIKLFEERDAILLELNPLVR  148
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 102 bits (257),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 36/96 (38%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query  207  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  265
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  266  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD  301
            G   C+  A  +++A        +PVV R+ GT  D
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEAD  96



Lambda      K        H        a         alpha
   0.322    0.139    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00034308

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   139     1e-40
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  103     6e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 139 bits (352),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 56/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query  5    GK-GGIRIVATPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTF  63
            GK GG+++  +PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  
Sbjct  54   GKAGGVKLAKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVL  113

Query  64   DRERYSPVILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEM  119
            DR    PVI+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +
Sbjct  114  DRASKGPVIIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELI  173

Query  120  PTIESIIRQMIKLFEERDAILLELNPLVR  148
                 II+++ KLF E DA L+E+NPLV 
Sbjct  174  KQAADIIKKLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 103 bits (260),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 43/128 (34%), Positives = 65/128 (51%), Gaps = 7/128 (5%)

Query  207  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  265
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  266  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD-----AAMKRLSTSELDI-STETD  319
            G   C+  A  +++A        +PVV R+ GT  D        K L+ S + I S+   
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ  120

Query  320  LEKAAKRI  327
              +AA  +
Sbjct  121  ALRAAGAV  128



Lambda      K        H        a         alpha
   0.321    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00029221

Length=743
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  90.5    3e-22
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  72.2    2e-16


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 90.5 bits (225),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 49/125 (39%), Positives = 65/125 (52%), Gaps = 24/125 (19%)

Query  336  RRILMNLFGNALKYT-QSGYISVTLRCSSTPSNAKMKRLARGDGTREGMGSVTLTVRDTG  394
            R++L NL  NALK+  ++G I+VTL                        G +TLTV D G
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEG---------------------GELTLTVEDNG  45

Query  395  QGIDKQYLQSNVFKPFSQEDPLS-PGSGLGLSIVHQTVVSLGGKVDITSTKGIGTEVTVT  453
             GI  + L   +F+PFS  D     G+GLGLSIV + V  LGG + + S  G GT VT+T
Sbjct  46   IGIPPEDLP-RIFEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLT  104

Query  454  LDLPR  458
            L L +
Sbjct  105  LPLAQ  109


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 72.2 bits (178),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 24/65 (37%), Positives = 36/65 (55%), Gaps = 0/65 (0%)

Query  148  AHATLVGSISHELRSPLHGILGSTELLTDSTMKPAQVALVNTIEHCGRSLLDIINNMLDF  207
            A +  + ++SHELR+PL  I G  ELL D  +   Q   + TI      LL +IN++LD 
Sbjct  1    AKSEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQREYLETILRSAERLLRLINDLLDL  60

Query  208  AKINQ  212
            ++I  
Sbjct  61   SRIEA  65



Lambda      K        H        a         alpha
   0.318    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 944393648


Query= TCONS_00029222

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain                   127     3e-36
CDD:395434 pfam00549, Ligase_CoA, CoA-ligase. This family include...  103     8e-28


>CDD:400651 pfam08442, ATP-grasp_2, ATP-grasp domain.  
Length=202

 Score = 127 bits (322),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 53/141 (38%), Positives = 83/141 (59%), Gaps = 4/141 (3%)

Query  3    ANRPEQAFQNASRMLGHYLATQQTPPHGLLVKKLYIYKAVDVEQEFYLALTFDRERYSPV  62
            A  PE+A + A  MLG  L T+QT P G  V K+ + +A+D+++E+YL++  DR    PV
Sbjct  62   AKSPEEAKEVAKEMLGKNLVTKQTGPDGQPVNKVLVEEALDIKKEYYLSIVLDRASKGPV  121

Query  63   ILISDQGGVNIE----SNQDKLHRFWFNLSRGITGETMAGIQKQSCFTDKEMPTIESIIR  118
            I+ S +GGV+IE     N +K+H+F  +  +G+T      I  +     + +     II+
Sbjct  122  IIASTEGGVDIEEVAAKNPEKIHKFPIDPLKGLTPYQAREIAFKLGLPGELIKQAADIIK  181

Query  119  QMIKLFEERDAILLELNPLVR  139
            ++ KLF E DA L+E+NPLV 
Sbjct  182  KLYKLFVEYDATLVEINPLVE  202


>CDD:395434 pfam00549, Ligase_CoA, CoA-ligase.  This family includes the 
CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate 
CoA ligase and ATP-citrate lyase. Some members of the 
family utilize ATP others use GTP.
Length=128

 Score = 103 bits (258),  Expect = 8e-28, Method: Composition-based stats.
 Identities = 36/96 (38%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query  198  IVNGAGLAMATNDLINLHGGKCANFLDIGGKATTETL-LKAFEILSRDQQVRGIFVNIFG  256
            +VNG  LAM   DLI L GG   NF+D+GG A T T  + A ++ + D +V+ I ++I  
Sbjct  1    LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL  60

Query  257  GIVRCDMIAESIIQAAHTLGGFRVPVVVRLQGTNCD  292
            G   C+  A  +++A        +PVV R+ GT  D
Sbjct  61   GYGACEDPAGGLLKAIKEARARELPVVARVCGTEAD  96



Lambda      K        H        a         alpha
   0.322    0.138    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00029224

Length=1175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  90.5    4e-22
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  72.2    3e-16


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 90.5 bits (225),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 49/125 (39%), Positives = 65/125 (52%), Gaps = 24/125 (19%)

Query  768  RRILMNLFGNALKYT-QSGYISVTLRCSSTPSNAKMKRLARGDGTREGMGSVTLTVRDTG  826
            R++L NL  NALK+  ++G I+VTL                        G +TLTV D G
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEG---------------------GELTLTVEDNG  45

Query  827  QGIDKQYLQSNVFKPFSQEDPLS-PGSGLGLSIVHQTVVSLGGKVDITSTKGIGTEVTVT  885
             GI  + L   +F+PFS  D     G+GLGLSIV + V  LGG + + S  G GT VT+T
Sbjct  46   IGIPPEDLP-RIFEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLT  104

Query  886  LDLPR  890
            L L +
Sbjct  105  LPLAQ  109


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 72.2 bits (178),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 24/65 (37%), Positives = 36/65 (55%), Gaps = 0/65 (0%)

Query  580  AHATLVGSISHELRSPLHGILGSTELLTDSTMKPAQVALVNTIEHCGRSLLDIINNMLDF  639
            A +  + ++SHELR+PL  I G  ELL D  +   Q   + TI      LL +IN++LD 
Sbjct  1    AKSEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQREYLETILRSAERLLRLINDLLDL  60

Query  640  AKINQ  644
            ++I  
Sbjct  61   SRIEA  65



Lambda      K        H        a         alpha
   0.316    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1505144564


Query= TCONS_00034310

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00034311

Length=436


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00029225

Length=436


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00034312

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00029226

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  85.9    8e-22


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 85.9 bits (213),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 52/150 (35%), Positives = 76/150 (51%), Gaps = 17/150 (11%)

Query  81   VGLYGIVLDFWFYWYHRLMHDVSFLWK-YHRTHHLTKHPNPLLTAYADHEQEFGDMVGVP  139
            V L  ++ DF FYW HRL+H + +LW+ +H+ HH ++ PN  LTA   H     + +   
Sbjct  1    VLLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNA-LTALRFH---PLEALLFA  56

Query  140  MMTYFTLRLLGLPMGFYEWWICHEYVVFAEVFGHSGLRLHLTVPSPLSWLMQWLDAEIVI  199
            ++    L LLGLP+    + +         +F HSGL        PL WL++ L      
Sbjct  57   LLVLLPLLLLGLPL--LAFLLGLLLGTLWYLFIHSGLLF------PLPWLLKRLL--GTP  106

Query  200  EDHDLHHRKGWRKSHNYGKQTRLWDRIFGT  229
              H LHH K   + +N+G    LWDR+FGT
Sbjct  107  RFHRLHHSKN--EEYNFGVTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.327    0.142    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0824    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00029227

Length=436


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00034313

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.518    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00029228

Length=436


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00029229

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                249     2e-78


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 249 bits (638),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 129/418 (31%), Positives = 181/418 (43%), Gaps = 49/418 (12%)

Query  80   EVTTAFCKRAAIAQQLTFCLTETFFDQALARARQLDDHLTATGQTVGPLHGLPISLKDCF  139
            E+  AF  R   A          FFD+ALA+A   D    A     GPLHG+PI++KD  
Sbjct  1    ELVEAFLDRIEAANPKLNAFVTVFFDEALAQAAAADKQRAAGDPK-GPLHGVPIAVKDNI  59

Query  140  NVAGVPTSLGFVSYLDRPAPTTNSSLVDILLAAGAVLYVKTNVPQTMMTADSHNNVFGRV  199
            +V GVPT+ G  +  + PAP  ++++V+ L  AGAV+  KTN+ +  M + + N+VFG  
Sbjct  60   DVKGVPTTAGSKALENYPAPY-DATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPT  118

Query  200  LNPYRRNLTAGGSSGGEGALIALRGSVLGIGTDIAGSIRIPALCCGTTGFKPSVRRVPYG  259
             NP+  + T GGSSGG  A +A     L IGTD  GSIRIPA  CG  G KP+  RV   
Sbjct  119  RNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPASFCGLVGLKPTYGRVS--  176

Query  260  GQTAAGRAGMVG---ITAVAGPLCRSLRDAELLLRTVFDSKPEDLDDGVVGFPWCDAPAK  316
                  R G+VG        GPL RS+ DA LLLR +    P+D        P    P K
Sbjct  177  ------RYGVVGYASSLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPPVPDYAEPVK  230

Query  317  ---DVLTVGVMAEDPNYPIHPPMQRTLALAAKKLAAAGHRIVDLTGRLPSISDACELSF-  372
                 L +GV  ED  + + P ++R +  A  +L A GH +V++    PS+  A  L + 
Sbjct  231  KSLKGLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVVEVD--PPSLDYALPLYYL  288

Query  373  ----------RYFNMDPDQTA-----LKKISDSGEPPIPSLR------ATYNVNEPGPEP  411
                        ++  P           +    G       R      A           
Sbjct  289  IAPAEASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRRIILGNYALSAGYYDKYYL  348

Query  412  TLQELYDMNVTRDEVMEKVRKTFLENQLDVIIGPAFQSCAVPHDEYGKPPYTVFWNLL  469
              Q+       R  +  +    F   +LDV++ P   + A    E       V +NL 
Sbjct  349  KAQK------VRRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEPDD-SPLVMYNLD  397



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593543448


Query= TCONS_00029230

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                269     4e-85


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 269 bits (689),  Expect = 4e-85, Method: Composition-based stats.
 Identities = 144/472 (31%), Positives = 205/472 (43%), Gaps = 59/472 (13%)

Query  80   EVTTAFCKRAAIAQQLTFCLTETFFDQALARARQLDDHLTATGQTVGPLHGLPISLKDCF  139
            E+  AF  R   A          FFD+ALA+A   D    A     GPLHG+PI++KD  
Sbjct  1    ELVEAFLDRIEAANPKLNAFVTVFFDEALAQAAAADKQRAAGDPK-GPLHGVPIAVKDNI  59

Query  140  NVAGVPTSLGFVSYLDRPAPTTNSSLVDILLAAGAVLYVKTNVPQTMMTADSHNNVFGRV  199
            +V GVPT+ G  +  + PAP  ++++V+ L  AGAV+  KTN+ +  M + + N+VFG  
Sbjct  60   DVKGVPTTAGSKALENYPAPY-DATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPT  118

Query  200  LNPYRRNLTAGGSSGGEGALIALRGSVLGIGTDIAGSIRIPALCCGTTGFKPSVRRVPYG  259
             NP+  + T GGSSGG  A +A     L IGTD  GSIRIPA  CG  G KP+  RV   
Sbjct  119  RNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPASFCGLVGLKPTYGRVS--  176

Query  260  GQTAAGRAGMVG---ITAVAGPLCRSLRDAELLLRTVFDSKPEDLDDGVVGFPWCDAPAK  316
                  R G+VG        GPL RS+ DA LLLR +    P+D        P    P K
Sbjct  177  ------RYGVVGYASSLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPPVPDYAEPVK  230

Query  317  ---DVLTVGVMAEDPNYPIHPPMQRTLALAAKKLAAAGHRIVDLTGRLPSISDACELSF-  372
                 L +GV  ED  + + P ++R +  A  +L A GH +V++    PS+  A  L + 
Sbjct  231  KSLKGLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVVEVD--PPSLDYALPLYYL  288

Query  373  ----------RYFNMDPDQTA-----LKKISDSGEPPIPSLR------ATYNVNEPGPEP  411
                        ++  P           +    G       R      A           
Sbjct  289  IAPAEASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRRIILGNYALSAGYYDKYYL  348

Query  412  TLQELYDMNVTRDEVMEKVRKTFLENQLDVIIGPAFQSCAVPHDEYGKPPYTVFWNLLEY  471
              Q+       R  +  +    F   +LDV++ P   + A    E       V +NL ++
Sbjct  349  KAQK------VRRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEPDD-SPLVMYNLDDF  399

Query  472  PSCVLPFGKAEEAADAEFVRDVQYIPAYKPKEVEGAPCHVQIIGRKLKDEAL  523
             + V+P   A   A +        +PA      +G P  VQIIG+   +E L
Sbjct  400  TAGVVPVNLAGLPAIS--------LPAGFTA--DGLPVGVQIIGKPGDEETL  441



Lambda      K        H        a         alpha
   0.319    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00034314

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                145     2e-40


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 145 bits (368),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 103/366 (28%), Positives = 146/366 (40%), Gaps = 57/366 (16%)

Query  1    MMTADSHNNVFGRVLNPYRRNLTAGGSSGGEGALIALRGSVLGIGTDIAGSIRIPALCCG  60
             M + + N+VFG   NP+  + T GGSSGG  A +A     L IGTD  GSIRIPA  CG
Sbjct  105  AMGSSTENSVFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPASFCG  164

Query  61   TTGFKPSVRRVPYGGQTAAGRAGMVG---ITAVAGPLCRSLRDAELLLRTVFDSKPEDLD  117
              G KP+  RV         R G+VG        GPL RS+ DA LLLR +    P+D  
Sbjct  165  LVGLKPTYGRVS--------RYGVVGYASSLDQVGPLARSVEDAALLLRVISGYDPKDST  216

Query  118  DGVVGFPWCDAPAK---DVLTVGVMAEDPNYPIHPPMQRTLALAAKKLAAAGHRIVDLTG  174
                  P    P K     L +GV  ED  + + P ++R +  A  +L A GH +V++  
Sbjct  217  SLPPPVPDYAEPVKKSLKGLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVVEVD-  275

Query  175  RLPSISDACELSF-----------RYFNMDPDQTA-----LKKISDSGEPPIPSLR----  214
              PS+  A  L +             ++  P           +    G       R    
Sbjct  276  -PPSLDYALPLYYLIAPAEASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRRIILG  334

Query  215  --ATYNVNEPGPEPTLQELYDMNVTRDEVMEKVRKTFLENQLDVIIGPAFQSCAVPHDEY  272
              A             Q+       R  +  +    F   +LDV++ P   + A    E 
Sbjct  335  NYALSAGYYDKYYLKAQK------VRRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEP  386

Query  273  GKPPYTVFWNLLEYPSCVLPFGKAEEAADAEFVRDVQYIPAYKPKEVEGAPCHVQIIGRK  332
                  V +NL ++ + V+P   A   A +        +PA      +G P  VQIIG+ 
Sbjct  387  DD-SPLVMYNLDDFTAGVVPVNLAGLPAIS--------LPAGFTA--DGLPVGVQIIGKP  435

Query  333  LKDEAL  338
              +E L
Sbjct  436  GDEETL  441



Lambda      K        H        a         alpha
   0.319    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00034315

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                145     2e-40


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 145 bits (368),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 103/366 (28%), Positives = 146/366 (40%), Gaps = 57/366 (16%)

Query  1    MMTADSHNNVFGRVLNPYRRNLTAGGSSGGEGALIALRGSVLGIGTDIAGSIRIPALCCG  60
             M + + N+VFG   NP+  + T GGSSGG  A +A     L IGTD  GSIRIPA  CG
Sbjct  105  AMGSSTENSVFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPASFCG  164

Query  61   TTGFKPSVRRVPYGGQTAAGRAGMVG---ITAVAGPLCRSLRDAELLLRTVFDSKPEDLD  117
              G KP+  RV         R G+VG        GPL RS+ DA LLLR +    P+D  
Sbjct  165  LVGLKPTYGRVS--------RYGVVGYASSLDQVGPLARSVEDAALLLRVISGYDPKDST  216

Query  118  DGVVGFPWCDAPAK---DVLTVGVMAEDPNYPIHPPMQRTLALAAKKLAAAGHRIVDLTG  174
                  P    P K     L +GV  ED  + + P ++R +  A  +L A GH +V++  
Sbjct  217  SLPPPVPDYAEPVKKSLKGLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVVEVD-  275

Query  175  RLPSISDACELSF-----------RYFNMDPDQTA-----LKKISDSGEPPIPSLR----  214
              PS+  A  L +             ++  P           +    G       R    
Sbjct  276  -PPSLDYALPLYYLIAPAEASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRRIILG  334

Query  215  --ATYNVNEPGPEPTLQELYDMNVTRDEVMEKVRKTFLENQLDVIIGPAFQSCAVPHDEY  272
              A             Q+       R  +  +    F   +LDV++ P   + A    E 
Sbjct  335  NYALSAGYYDKYYLKAQK------VRRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEP  386

Query  273  GKPPYTVFWNLLEYPSCVLPFGKAEEAADAEFVRDVQYIPAYKPKEVEGAPCHVQIIGRK  332
                  V +NL ++ + V+P   A   A +        +PA      +G P  VQIIG+ 
Sbjct  387  DD-SPLVMYNLDDFTAGVVPVNLAGLPAIS--------LPAGFTA--DGLPVGVQIIGKP  435

Query  333  LKDEAL  338
              +E L
Sbjct  436  GDEETL  441



Lambda      K        H        a         alpha
   0.319    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00029232

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465727 pfam18368, Ig_GlcNase, Exo-beta-D-glucosaminidase Ig-f...  136     1e-39


>CDD:465727 pfam18368, Ig_GlcNase, Exo-beta-D-glucosaminidase Ig-fold domain. 
 This domain can be found in 2 glycoside hydrolase subfamily 
of beta-glucosaminidases (EC:3.2.1.165) such as CsxA, 
from Amycolatopsis orientalis that has exo-beta-D-glucosaminidase 
(exo-chitosanase) activity. It has an immunoglobulin-like 
topology.
Length=102

 Score = 136 bits (344),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 52/107 (49%), Positives = 67/107 (63%), Gaps = 5/107 (5%)

Query  331  WYYTPVTKYVDYKALISMPTAAVTASLKRLPAKDGLSQVQVVLKNPSATPAVFMHLSAIN  390
            WYYTPVTKY DY AL  +P A V+ + K    K G   V V L+NPS  PA F+ L+ ++
Sbjct  1    WYYTPVTKYADYTALNKLPPATVSVTAK----KTGEGTVTVTLENPSDVPAFFVRLNLVD  56

Query  391  KDTQEEITPVFWSDNYVTVFKGESVTLTAAFPGGRSNWEVILSGANV  437
                E + PVFWSDNYVT++ GES+TLT ++P       V +SG NV
Sbjct  57   AA-GERVLPVFWSDNYVTLWPGESLTLTVSYPAADLGGAVEVSGWNV  102



Lambda      K        H        a         alpha
   0.318    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00029231

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465727 pfam18368, Ig_GlcNase, Exo-beta-D-glucosaminidase Ig-f...  136     1e-39


>CDD:465727 pfam18368, Ig_GlcNase, Exo-beta-D-glucosaminidase Ig-fold domain. 
 This domain can be found in 2 glycoside hydrolase subfamily 
of beta-glucosaminidases (EC:3.2.1.165) such as CsxA, 
from Amycolatopsis orientalis that has exo-beta-D-glucosaminidase 
(exo-chitosanase) activity. It has an immunoglobulin-like 
topology.
Length=102

 Score = 136 bits (344),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 52/107 (49%), Positives = 67/107 (63%), Gaps = 5/107 (5%)

Query  331  WYYTPVTKYVDYKALISMPTAAVTASLKRLPAKDGLSQVQVVLKNPSATPAVFMHLSAIN  390
            WYYTPVTKY DY AL  +P A V+ + K    K G   V V L+NPS  PA F+ L+ ++
Sbjct  1    WYYTPVTKYADYTALNKLPPATVSVTAK----KTGEGTVTVTLENPSDVPAFFVRLNLVD  56

Query  391  KDTQEEITPVFWSDNYVTVFKGESVTLTAAFPGGRSNWEVILSGANV  437
                E + PVFWSDNYVT++ GES+TLT ++P       V +SG NV
Sbjct  57   AA-GERVLPVFWSDNYVTLWPGESLTLTVSYPAADLGGAVEVSGWNV  102



Lambda      K        H        a         alpha
   0.318    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00029233

Length=316
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465727 pfam18368, Ig_GlcNase, Exo-beta-D-glucosaminidase Ig-f...  133     1e-39


>CDD:465727 pfam18368, Ig_GlcNase, Exo-beta-D-glucosaminidase Ig-fold domain. 
 This domain can be found in 2 glycoside hydrolase subfamily 
of beta-glucosaminidases (EC:3.2.1.165) such as CsxA, 
from Amycolatopsis orientalis that has exo-beta-D-glucosaminidase 
(exo-chitosanase) activity. It has an immunoglobulin-like 
topology.
Length=102

 Score = 133 bits (336),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 52/107 (49%), Positives = 67/107 (63%), Gaps = 5/107 (5%)

Query  204  WYYTPVTKYVDYKALISMPTAAVTASLKRLPAKDGLSQVQVVLKNPSATPAVFMHLSAIN  263
            WYYTPVTKY DY AL  +P A V+ + K    K G   V V L+NPS  PA F+ L+ ++
Sbjct  1    WYYTPVTKYADYTALNKLPPATVSVTAK----KTGEGTVTVTLENPSDVPAFFVRLNLVD  56

Query  264  KDTQEEITPVFWSDNYVTVFKGESVTLTAAFPGGRSNWEVILSGANV  310
                E + PVFWSDNYVT++ GES+TLT ++P       V +SG NV
Sbjct  57   AA-GERVLPVFWSDNYVTLWPGESLTLTVSYPAADLGGAVEVSGWNV  102



Lambda      K        H        a         alpha
   0.318    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00029234

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  105     7e-30
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  88.5    2e-23
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  68.2    1e-15
CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain. ...  56.7    8e-11


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 105 bits (264),  Expect = 7e-30, Method: Composition-based stats.
 Identities = 39/96 (41%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query  54   VLELGCGSGQPCTAILASDPAMKVTANDISPVQLALAKEHLPSA--NVALIEGDMMELSF  111
            VL+LGCG+G+  T  LA     +VT  D+SP  L  A+E    A  NV  ++GD  +L F
Sbjct  1    VLDLGCGTGR-LTLALARRGGARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAEDLPF  59

Query  112  GDHSFDAVIAMYSILHLPKEEQVTLLKRIYKWLKPG  147
             D SFD V++   + HLP  +    L+ I + LKPG
Sbjct  60   PDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPG  95


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 88.5 bits (220),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 37/97 (38%), Positives = 56/97 (58%), Gaps = 4/97 (4%)

Query  55   LELGCGSGQPCTAILASDPAMKVTANDISPVQLALAKEHLPSANVALIEGDMMELSFGDH  114
            L++GCG+G   T +LA   A +VT  DISP  L LA+E  P   +  + GD  +L F D+
Sbjct  1    LDVGCGTGLL-TELLARLGA-RVTGVDISPEMLELAREKAPREGLTFVVGDAEDLPFPDN  58

Query  115  SFDAVIAMYSILHLPKEEQVTLLKRIYKWLKPGALFL  151
            SFD V++   + H+  E+    L+ I + LKPG + +
Sbjct  59   SFDLVLSSEVLHHV--EDPERALREIARVLKPGGILI  93


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 68.2 bits (167),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 38/102 (37%), Positives = 53/102 (52%), Gaps = 10/102 (10%)

Query  55   LELGCGSGQPCTAILASDPAMKVTANDISPVQLALAKEHLPS------ANVALIEGDMME  108
            LE+GCG+G    A+L + P ++ T  DISP  L  A+E L +        V L + D+ E
Sbjct  1    LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAALGLLNAVRVELFQLDLGE  60

Query  109  LSFGDHSFDAVIAMYSILHLPKEEQVTLLKRIYKWLKPGALF  150
            L  G  SFD V+A   + HL     V  L+ I + LKPG + 
Sbjct  61   LDPG--SFDVVVASNVLHHLADPRAV--LRNIRRLLKPGGVL  98


>CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain.  This family 
appears to have methyltransferase activity.
Length=150

 Score = 56.7 bits (137),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 36/125 (29%), Positives = 55/125 (44%), Gaps = 11/125 (9%)

Query  52   KSVLELGCGSGQPCTAILASDPAM-KVTANDISPVQLALAKEH---LPSANVALIEGDM-  106
              VL+LGCG+G     +        +V   DIS   +  A+E+   L   NV   +GD+ 
Sbjct  5    MRVLDLGCGTGHLSFELAEELGPNAEVVGIDISEEAIEKARENAQKLGFDNVEFEQGDIE  64

Query  107  -MELSFGDHSFDAVIAMYSILHLPKEEQVTLLKRIYKWLKPGALFLGSFAAGLKEEDLFD  165
             +     D  FD VI+   + H+P  ++V  L+ I + LKPG   + S    L E     
Sbjct  65   ELPELLEDDKFDVVISNCVLNHIPDPDKV--LQEILRVLKPGGRLIISDPDSLAE---LP  119

Query  166  KHWLD  170
             H  +
Sbjct  120  AHVKE  124



Lambda      K        H        a         alpha
   0.317    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00029235

Length=327


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00029239

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               62.1    9e-13


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 62.1 bits (151),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 33/90 (37%), Positives = 54/90 (60%), Gaps = 8/90 (9%)

Query  297  LHFAALSGNPELVAFLLYNGADAHVENTSGENALHLAMISPREEEHVELARLLVEKGQVD  356
            LH AA +GN ELV  LL NGADA++++ +G  ALHLA  +     H+E+ +LL+E   V+
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKN----GHLEIVKLLLEHADVN  56

Query  357  PMGSVRQTGVVH--SYAGPVEAFRYLIHQD  384
             +    +T  +H  + +G +E  + L+ + 
Sbjct  57   -LKDNGRT-ALHYAARSGHLEIVKLLLEKG  84


 Score = 57.4 bits (139),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 33/92 (36%), Positives = 50/92 (54%), Gaps = 8/92 (9%)

Query  262  LLFAFCREGDLRNIQRLFSKGLASPFDITPDGDMALHFAALSGNPELVAFLLYNGADAHV  321
            L  A  + G+L  ++ L   G A       +G  ALH AA +G+ E+V  LL   AD ++
Sbjct  1    LHLA-AKNGNLELVKLLLENG-ADANLQDKNGRTALHLAAKNGHLEIVKLLL-EHADVNL  57

Query  322  ENTSGENALHLAMISPREEEHVELARLLVEKG  353
            ++ +G  ALH A  S     H+E+ +LL+EKG
Sbjct  58   KD-NGRTALHYAARS----GHLEIVKLLLEKG  84



Lambda      K        H        a         alpha
   0.318    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00029236

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00029237

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               62.1    1e-12


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 62.1 bits (151),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 33/90 (37%), Positives = 54/90 (60%), Gaps = 8/90 (9%)

Query  150  LHFAALSGNPELVAFLLYNGADAHVENTSGENALHLAMISPREEEHVELARLLVEKGQVD  209
            LH AA +GN ELV  LL NGADA++++ +G  ALHLA  +     H+E+ +LL+E   V+
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKN----GHLEIVKLLLEHADVN  56

Query  210  PMGSVRQTGVVH--SYAGPVEAFRYLIHQD  237
             +    +T  +H  + +G +E  + L+ + 
Sbjct  57   -LKDNGRT-ALHYAARSGHLEIVKLLLEKG  84


 Score = 57.4 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 33/92 (36%), Positives = 50/92 (54%), Gaps = 8/92 (9%)

Query  115  LLFAFCREGDLRNIQRLFSKGLASPFDITPDGDMALHFAALSGNPELVAFLLYNGADAHV  174
            L  A  + G+L  ++ L   G A       +G  ALH AA +G+ E+V  LL   AD ++
Sbjct  1    LHLA-AKNGNLELVKLLLENG-ADANLQDKNGRTALHLAAKNGHLEIVKLLL-EHADVNL  57

Query  175  ENTSGENALHLAMISPREEEHVELARLLVEKG  206
            ++ +G  ALH A  S     H+E+ +LL+EKG
Sbjct  58   KD-NGRTALHYAARS----GHLEIVKLLLEKG  84



Lambda      K        H        a         alpha
   0.321    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00029238

Length=327


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00034316

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00029240

Length=345


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00034317

Length=263


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 290477132


Query= TCONS_00029242

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00029243

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00029245

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00029246

Length=263


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 290477132


Query= TCONS_00029249

Length=401


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00029247

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00029248

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00029250

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00029251

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.146    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00029252

Length=1036


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.120    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1330923440


Query= TCONS_00029253

Length=356


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00034318

Length=697
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459775 pfam00350, Dynamin_N, Dynamin family                       145     5e-41


>CDD:459775 pfam00350, Dynamin_N, Dynamin family.  
Length=168

 Score = 145 bits (368),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 65/191 (34%), Positives = 87/191 (46%), Gaps = 24/191 (13%)

Query  113  IIVCGDQSSGKSSVLEAISGVSFPIRSSL-CTRFPTELVLRKSSQVGVCVSIVPHRSRSE  171
            I V GDQSSGKSSVL A+ G     R     TR PT L L +S         V ++    
Sbjct  1    IAVVGDQSSGKSSVLNALLGRDILPRGPGPTTRRPTVLRLGESPGASEGAVKVEYKD---  57

Query  172  SEREALAQFHEELDSFEGLPQLIENAKSAMGIYTNAKSFSNDLLRVEVSGPDRPHLTIVD  231
                      ++ + F  L + IE       I    K  S++ + +E+  P  P LT+VD
Sbjct  58   --------GEKKFEDFSELREEIEKETEK--IAGTGKGISSEPIVLEILSPLVPGLTLVD  107

Query  232  LPGLIHSETKQQSAADVELVHDVVKSYMEEPRSIILAVVSAKNDVPNQIVLKLARAADPH  291
             PGL       Q         ++ K Y++ P  IILAV  A  D+     L LAR  DP+
Sbjct  108  TPGLDSVAVGDQ---------ELTKEYIK-PADIILAVTPANVDLSTSEALFLAREVDPN  157

Query  292  GTRTLGVITKP  302
            G RT+GV+TK 
Sbjct  158  GKRTIGVLTKA  168



Lambda      K        H        a         alpha
   0.318    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 890773160


Query= TCONS_00029255

Length=818
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459775 pfam00350, Dynamin_N, Dynamin family                       143     3e-40


>CDD:459775 pfam00350, Dynamin_N, Dynamin family.  
Length=168

 Score = 143 bits (364),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 65/191 (34%), Positives = 87/191 (46%), Gaps = 24/191 (13%)

Query  113  IIVCGDQSSGKSSVLEAISGVSFPIRSSL-CTRFPTELVLRKSSQVGVCVSIVPHRSRSE  171
            I V GDQSSGKSSVL A+ G     R     TR PT L L +S         V ++    
Sbjct  1    IAVVGDQSSGKSSVLNALLGRDILPRGPGPTTRRPTVLRLGESPGASEGAVKVEYKD---  57

Query  172  SEREALAQFHEELDSFEGLPQLIENAKSAMGIYTNAKSFSNDLLRVEVSGPDRPHLTIVD  231
                      ++ + F  L + IE       I    K  S++ + +E+  P  P LT+VD
Sbjct  58   --------GEKKFEDFSELREEIEKETEK--IAGTGKGISSEPIVLEILSPLVPGLTLVD  107

Query  232  LPGLIHSETKQQSAADVELVHDVVKSYMEEPRSIILAVVSAKNDVPNQIVLKLARAADPH  291
             PGL       Q         ++ K Y++ P  IILAV  A  D+     L LAR  DP+
Sbjct  108  TPGLDSVAVGDQ---------ELTKEYIK-PADIILAVTPANVDLSTSEALFLAREVDPN  157

Query  292  GTRTLGVITKP  302
            G RT+GV+TK 
Sbjct  158  GKRTIGVLTKA  168



Lambda      K        H        a         alpha
   0.317    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0593    0.140     1.90     42.6     43.6 

Effective search space used: 1037876622


Query= TCONS_00034319

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  133     2e-36
CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  93.6    4e-23


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 133 bits (337),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 75/259 (29%), Positives = 110/259 (42%), Gaps = 72/259 (28%)

Query  72   VNNRQIAQPRGRVVGGSSALNFSVVLYPPASDFEAW-KALGNQGWGAEDMAPYLRKFHTF  130
            VN R++  P G  VGG S++N+S  +  PA+  + W    G +GWG +D  PY+ K    
Sbjct  14   VNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKV---  70

Query  131  SPPSKSTADLLGVDSYMKASSQGCDGPVPVS-LPDVYGPFNEAWDKTFEKLGWRTDADP-  188
                                    +GP+ V+       P N+A  K  E+LG+  +A P 
Sbjct  71   ------------------------EGPLGVTTKGIEESPLNQALLKAAEELGYPVEAVPR  106

Query  189  -----------IAGRKLGAFTPPLTVDAKTGKRGYAAAYYSPEVAARPNLRLLAETMVER  237
                         G   GA            K+  A  +  P +    NLR+L     E+
Sbjct  107  NSNGCHYCGFCGLGCPTGA------------KQSTARTWLRPALER--NLRILTGAKAEK  152

Query  238  VLLTRQDGDVLATGVLVKDKDG--AREIHAKKEVIICAGSLNTPQILELSGIGNAGLLQK  295
            +++  + G   A GV  +D  G   R I A KEV++ AG+LNTP +L  SG+G      K
Sbjct  153  IIILGRGGR--AVGVEARDGGGGIKRLITAAKEVVVAAGALNTPPLLLRSGLG------K  204

Query  296  HDIPVVIDNPGVGENLQDH  314
            +  P       VG+NLQ H
Sbjct  205  NPHP-------VGKNLQLH  216


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 93.6 bits (233),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 38/116 (33%), Positives = 49/116 (42%), Gaps = 3/116 (3%)

Query  454  PFSRGSVHISSPKAEDKPIYDPNFLSHPLDLEILARHTQFLETIAATEPFKSLLKERRIP  513
            P SRG V +SS      P+ DPN+LS P DL  L    +    I A       ++    P
Sbjct  1    PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGVELTPGP  60

Query  514  ENARDLGDLERAKEL---VKDRLFTCFHPAGTCAMLPREMGGVVDDQLRVYGTRNL  566
                    +    EL   ++    T +HP GTC M       VVD  LRV+G  NL
Sbjct  61   VPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPDDAVVDPDLRVHGVDNL  116



Lambda      K        H        a         alpha
   0.318    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00029257

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            79.8    7e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 79.8 bits (197),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 115/352 (33%), Gaps = 45/352 (13%)

Query  81   MFTYLIGQGIGSIVFPPYSEAFGRKKLYIVSTAMYSLSCIIIAIVPSVAGVVVGRLLSGF  140
            +  + +G  +   +    S+ FGR+++ ++   +++L  +++    S+  ++V R+L G 
Sbjct  38   LTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL  97

Query  141  LSAIPTNVVAGSIEDMFNAKDRIWFLSLWMMLAPWGLALGPIYSTYITYALNWRWVFYVA  200
             +          I D F  ++R   L L       G ALGP+    +     WR  F + 
Sbjct  98   GAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLIL  157

Query  201  AIVTGFIACLLLGIRESRPPLLLDQEVRRLCQALGKETQMVVQSLNPDRIPDLRTFFTMA  260
            AI+   +A +LL +    P     +                                 ++
Sbjct  158  AIL-SLLAAVLLLLPRPPPESKRPKPAEEA---------------------------RLS  189

Query  261  LFRPIYLFFTEPIIFLVSIISAIPFTLIYMFTEALPPIYQSFGMTPTHSCLPFLGLGLGC  320
            L         +P+++L+  +        +     LP   +  G++   + L     GL  
Sbjct  190  LIVAWKALLRDPVLWLLLALLLF-GFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLG  248

Query  321  MLGMLTRIHDYKLIVSHHRQRLPLRPEDKLLGFMIGSPVFALGLWLFAWTIPPAITSVHW  380
             +G         L++     RL  R         +   +  L L      +     S  W
Sbjct  249  AIGR--------LLLGRLSDRLGRR-------RRLLLALLLLILAALGLLLLSLTLSSLW  293

Query  381  MVSTVALVAIGYAATEFGSVLTGYLADSYLSYAASGFAAQTILRTSMSAAFP  432
            ++  + L+  G+    F ++       +      +         +   A  P
Sbjct  294  LLLALLLLGFGFGLV-FPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.142    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00034320

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  107     2e-26


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 107 bits (268),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 78/339 (23%), Positives = 119/339 (35%), Gaps = 45/339 (13%)

Query  10   VIIIGAGATGLSLAQGLKKAGIAYTIYEQHDDEAYARRAG---QWTMALHSSLPYLDSIL  66
            V+I+G G  GL LA  L +AG+   + E+H   +   RA    Q TM L       D IL
Sbjct  4    VLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAHGLNQRTMELLRQAGLEDRIL  63

Query  67   PSDLRAKLNSTTTNPWAEPDPTIAAAIPFVNGATGELMAKIPMPSPKRVIRGKLRDLLRT  126
               +  +        +                 +   +   P    + ++          
Sbjct  64   AEGVPHEGMGLA---FYNTRRRADLDFLT----SPPRVTVYPQTELEPILVEHAE---AR  113

Query  127  GVEVRFGRRLTDIRVEDDGVIAVF----DGEE--VRGNVLVGADGVHSVVRGRLVDEDVA  180
            G +VRFG  +  +  + DGV AV     DGEE  VR   LVG DG  S VR + +  +  
Sbjct  114  GAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVR-KTLGIEFE  172

Query  181  ALQKPNILVLNAFPSFTREQALFIHGKSHPIVQLAPHPHQKTSIFSN--VANVVDPVRPE  238
              +      L+            +   +  +            I++      +V P R  
Sbjct  173  GFEGVPFGSLD------------VLFDAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSA  220

Query  239  TWVFHYCLSIWTADDAPETAEE-RRALFKHYMSQYCEPYRSAGEWLSQATPIRAEKFHYW  297
                +Y    W  +      E     L +             G  L+    +    +   
Sbjct  221  GRERYYVQVPWDEEVEERPEEFTDEELKQRLR-------SIVGIDLALVEILWKSIWGVA  273

Query  298  KNI-TRWRNFGGKVTLAGDAAHPMVPFTAQGLNTALEDV  335
              + TR+R   G+V LAGDAAH   P   QGLNTA++D 
Sbjct  274  SRVATRYRK--GRVFLAGDAAHIHPPTGGQGLNTAIQDA  310



Lambda      K        H        a         alpha
   0.320    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00034321

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  133     2e-36
CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  84.8    5e-20


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 133 bits (337),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 75/259 (29%), Positives = 110/259 (42%), Gaps = 72/259 (28%)

Query  72   VNNRQIAQPRGRVVGGSSALNFSVVLYPPASDFEAW-KALGNQGWGAEDMAPYLRKFHTF  130
            VN R++  P G  VGG S++N+S  +  PA+  + W    G +GWG +D  PY+ K    
Sbjct  14   VNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKV---  70

Query  131  SPPSKSTADLLGVDSYMKASSQGCDGPVPVS-LPDVYGPFNEAWDKTFEKLGWRTDADP-  188
                                    +GP+ V+       P N+A  K  E+LG+  +A P 
Sbjct  71   ------------------------EGPLGVTTKGIEESPLNQALLKAAEELGYPVEAVPR  106

Query  189  -----------IAGRKLGAFTPPLTVDAKTGKRGYAAAYYSPEVAARPNLRLLAETMVER  237
                         G   GA            K+  A  +  P +    NLR+L     E+
Sbjct  107  NSNGCHYCGFCGLGCPTGA------------KQSTARTWLRPALER--NLRILTGAKAEK  152

Query  238  VLLTRQDGDVLATGVLVKDKDG--AREIHAKKEVIICAGSLNTPQILELSGIGNAGLLQK  295
            +++  + G   A GV  +D  G   R I A KEV++ AG+LNTP +L  SG+G      K
Sbjct  153  IIILGRGGR--AVGVEARDGGGGIKRLITAAKEVVVAAGALNTPPLLLRSGLG------K  204

Query  296  HDIPVVIDNPGVGENLQDH  314
            +  P       VG+NLQ H
Sbjct  205  NPHP-------VGKNLQLH  216


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 84.8 bits (210),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 35/111 (32%), Positives = 46/111 (41%), Gaps = 3/111 (3%)

Query  454  PFSRGSVHISSPKAEDKPIYDPNFLSHPLDLEILARHTQFLETIAATEPFKSLLKERRIP  513
            P SRG V +SS      P+ DPN+LS P DL  L    +    I A       ++    P
Sbjct  1    PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGVELTPGP  60

Query  514  ENARDLGDLERAKEL---VKDRLFTCFHPAGTCAMLPREMGGVVDDQLRVY  561
                    +    EL   ++    T +HP GTC M       VVD  LRV+
Sbjct  61   VPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPDDAVVDPDLRVH  111



Lambda      K        H        a         alpha
   0.318    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00029259

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  133     2e-36
CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  84.8    5e-20


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 133 bits (337),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 75/259 (29%), Positives = 110/259 (42%), Gaps = 72/259 (28%)

Query  72   VNNRQIAQPRGRVVGGSSALNFSVVLYPPASDFEAW-KALGNQGWGAEDMAPYLRKFHTF  130
            VN R++  P G  VGG S++N+S  +  PA+  + W    G +GWG +D  PY+ K    
Sbjct  14   VNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKV---  70

Query  131  SPPSKSTADLLGVDSYMKASSQGCDGPVPVS-LPDVYGPFNEAWDKTFEKLGWRTDADP-  188
                                    +GP+ V+       P N+A  K  E+LG+  +A P 
Sbjct  71   ------------------------EGPLGVTTKGIEESPLNQALLKAAEELGYPVEAVPR  106

Query  189  -----------IAGRKLGAFTPPLTVDAKTGKRGYAAAYYSPEVAARPNLRLLAETMVER  237
                         G   GA            K+  A  +  P +    NLR+L     E+
Sbjct  107  NSNGCHYCGFCGLGCPTGA------------KQSTARTWLRPALER--NLRILTGAKAEK  152

Query  238  VLLTRQDGDVLATGVLVKDKDG--AREIHAKKEVIICAGSLNTPQILELSGIGNAGLLQK  295
            +++  + G   A GV  +D  G   R I A KEV++ AG+LNTP +L  SG+G      K
Sbjct  153  IIILGRGGR--AVGVEARDGGGGIKRLITAAKEVVVAAGALNTPPLLLRSGLG------K  204

Query  296  HDIPVVIDNPGVGENLQDH  314
            +  P       VG+NLQ H
Sbjct  205  NPHP-------VGKNLQLH  216


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 84.8 bits (210),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 35/111 (32%), Positives = 46/111 (41%), Gaps = 3/111 (3%)

Query  454  PFSRGSVHISSPKAEDKPIYDPNFLSHPLDLEILARHTQFLETIAATEPFKSLLKERRIP  513
            P SRG V +SS      P+ DPN+LS P DL  L    +    I A       ++    P
Sbjct  1    PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGVELTPGP  60

Query  514  ENARDLGDLERAKEL---VKDRLFTCFHPAGTCAMLPREMGGVVDDQLRVY  561
                    +    EL   ++    T +HP GTC M       VVD  LRV+
Sbjct  61   VPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPDDAVVDPDLRVH  111



Lambda      K        H        a         alpha
   0.318    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00029260

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  133     2e-36
CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  88.6    2e-21


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 133 bits (337),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 75/259 (29%), Positives = 110/259 (42%), Gaps = 72/259 (28%)

Query  72   VNNRQIAQPRGRVVGGSSALNFSVVLYPPASDFEAW-KALGNQGWGAEDMAPYLRKFHTF  130
            VN R++  P G  VGG S++N+S  +  PA+  + W    G +GWG +D  PY+ K    
Sbjct  14   VNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKV---  70

Query  131  SPPSKSTADLLGVDSYMKASSQGCDGPVPVS-LPDVYGPFNEAWDKTFEKLGWRTDADP-  188
                                    +GP+ V+       P N+A  K  E+LG+  +A P 
Sbjct  71   ------------------------EGPLGVTTKGIEESPLNQALLKAAEELGYPVEAVPR  106

Query  189  -----------IAGRKLGAFTPPLTVDAKTGKRGYAAAYYSPEVAARPNLRLLAETMVER  237
                         G   GA            K+  A  +  P +    NLR+L     E+
Sbjct  107  NSNGCHYCGFCGLGCPTGA------------KQSTARTWLRPALER--NLRILTGAKAEK  152

Query  238  VLLTRQDGDVLATGVLVKDKDG--AREIHAKKEVIICAGSLNTPQILELSGIGNAGLLQK  295
            +++  + G   A GV  +D  G   R I A KEV++ AG+LNTP +L  SG+G      K
Sbjct  153  IIILGRGGR--AVGVEARDGGGGIKRLITAAKEVVVAAGALNTPPLLLRSGLG------K  204

Query  296  HDIPVVIDNPGVGENLQDH  314
            +  P       VG+NLQ H
Sbjct  205  NPHP-------VGKNLQLH  216


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 88.6 bits (220),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 36/114 (32%), Positives = 47/114 (41%), Gaps = 3/114 (3%)

Query  454  PFSRGSVHISSPKAEDKPIYDPNFLSHPLDLEILARHTQFLETIAATEPFKSLLKERRIP  513
            P SRG V +SS      P+ DPN+LS P DL  L    +    I A       ++    P
Sbjct  1    PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGVELTPGP  60

Query  514  ENARDLGDLERAKEL---VKDRLFTCFHPAGTCAMLPREMGGVVDDQLRVYGTR  564
                    +    EL   ++    T +HP GTC M       VVD  LRV+G  
Sbjct  61   VPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPDDAVVDPDLRVHGVD  114



Lambda      K        H        a         alpha
   0.318    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 705370016


Query= TCONS_00034322

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00034323

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00029261

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 7...  378     6e-133


>CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76.  Family 
of alpha-1,6-mannanases.
Length=348

 Score = 378 bits (972),  Expect = 6e-133, Method: Composition-based stats.
 Identities = 159/235 (68%), Positives = 188/235 (80%), Gaps = 3/235 (1%)

Query  27   SIKQAAHHVAANMLSHYTGMKPGDNPGNLPPPYYWWEAGAMFNALIDYWYLTGDSTWNAI  86
            SIK AA  +A  ++ +Y G +PG  PG LP PYYWWEAGAMF ALIDYWY TGDST+N +
Sbjct  1    SIKSAAATIAQGLMDYYNGNEPGGTPGMLPDPYYWWEAGAMFGALIDYWYYTGDSTYNDL  60

Query  87   TTQALTWQAGHTGTFMPTNQTKTEGNDDQAFWAFAAMSAAERNFPDPDPDHGPGWLAMAQ  146
             TQAL +QAG    +MP NQ+ TEGNDDQ FW  AAM+AAERNFP P  +  P WLA+AQ
Sbjct  61   ITQALLYQAGPNYDYMPANQSTTEGNDDQGFWGLAAMTAAERNFPPPTDE--PSWLALAQ  118

Query  147  AVFNTQAARWDEDTCGGGLRWQIFSFNNGWNYKNTISNGCFFHLAARLARYTGNRTYAEW  206
            AVFNTQA+RWD +TCGGGLRWQIF +N+G++YKN+ISNGC F LAARLARYTGN+TY +W
Sbjct  119  AVFNTQASRWDTETCGGGLRWQIFPWNSGYDYKNSISNGCLFQLAARLARYTGNQTYLDW  178

Query  207  AERVWDWTVDVGFI-TDDWLFYDGADVLLNCSDLNRIEWTYNSGVYLLGAANMYN  260
            AE+VWDW+VDVG I  DDWL YDGADV  NC+D+N+++WTYN G YL GAA MYN
Sbjct  179  AEKVWDWSVDVGLIDDDDWLVYDGADVNDNCTDINKLQWTYNQGTYLSGAAYMYN  233



Lambda      K        H        a         alpha
   0.322    0.136    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00029262

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00029263

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  133     2e-36
CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  84.8    5e-20


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 133 bits (337),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 75/259 (29%), Positives = 110/259 (42%), Gaps = 72/259 (28%)

Query  72   VNNRQIAQPRGRVVGGSSALNFSVVLYPPASDFEAW-KALGNQGWGAEDMAPYLRKFHTF  130
            VN R++  P G  VGG S++N+S  +  PA+  + W    G +GWG +D  PY+ K    
Sbjct  14   VNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKV---  70

Query  131  SPPSKSTADLLGVDSYMKASSQGCDGPVPVS-LPDVYGPFNEAWDKTFEKLGWRTDADP-  188
                                    +GP+ V+       P N+A  K  E+LG+  +A P 
Sbjct  71   ------------------------EGPLGVTTKGIEESPLNQALLKAAEELGYPVEAVPR  106

Query  189  -----------IAGRKLGAFTPPLTVDAKTGKRGYAAAYYSPEVAARPNLRLLAETMVER  237
                         G   GA            K+  A  +  P +    NLR+L     E+
Sbjct  107  NSNGCHYCGFCGLGCPTGA------------KQSTARTWLRPALER--NLRILTGAKAEK  152

Query  238  VLLTRQDGDVLATGVLVKDKDG--AREIHAKKEVIICAGSLNTPQILELSGIGNAGLLQK  295
            +++  + G   A GV  +D  G   R I A KEV++ AG+LNTP +L  SG+G      K
Sbjct  153  IIILGRGGR--AVGVEARDGGGGIKRLITAAKEVVVAAGALNTPPLLLRSGLG------K  204

Query  296  HDIPVVIDNPGVGENLQDH  314
            +  P       VG+NLQ H
Sbjct  205  NPHP-------VGKNLQLH  216


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 84.8 bits (210),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 35/111 (32%), Positives = 46/111 (41%), Gaps = 3/111 (3%)

Query  454  PFSRGSVHISSPKAEDKPIYDPNFLSHPLDLEILARHTQFLETIAATEPFKSLLKERRIP  513
            P SRG V +SS      P+ DPN+LS P DL  L    +    I A       ++    P
Sbjct  1    PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGLVLGVELTPGP  60

Query  514  ENARDLGDLERAKEL---VKDRLFTCFHPAGTCAMLPREMGGVVDDQLRVY  561
                    +    EL   ++    T +HP GTC M       VVD  LRV+
Sbjct  61   VPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPDDAVVDPDLRVH  111



Lambda      K        H        a         alpha
   0.318    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00029264

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  70.4    5e-14


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 70.4 bits (173),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 79/236 (33%), Gaps = 47/236 (20%)

Query  73   RTGVEVRFGRRLTDIRVEDDGVIAVF----DGEE--VRGNVLVGADGAWCEGDSSTRTLP  126
              G +VRFG  +  +  + DGV AV     DGEE  VR   LVG DG             
Sbjct  112  ARGAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGR-----------  160

Query  127  RCRSRTSWSWWVPRHPFSRECAKEERKNAFPSFTREQALFIHGKSHPIVQLAPHPHQKTS  186
                    S         R+    E +          +L +   +  +            
Sbjct  161  --------SP-------VRKTLGIEFEG--FEGVPFGSLDVLFDAPDLSDPVERAFVHYL  203

Query  187  IFSN--VANVVDPVRPETWVFHYCLSIWTADDAPETAEE-RRALFKHYMSQYCEPYRSAG  243
            I++      +V P R      +Y    W  +      E     L +             G
Sbjct  204  IYAPHSRGFMVGPWRSAGRERYYVQVPWDEEVEERPEEFTDEELKQRLR-------SIVG  256

Query  244  EWLSQATPIRAEKFHYWKNI-TRWRNFGGKVTLAGDAAHPMVPFTAQGLNTALEDV  298
              L+    +    +     + TR+R   G+V LAGDAAH   P   QGLNTA++D 
Sbjct  257  IDLALVEILWKSIWGVASRVATRYRK--GRVFLAGDAAHIHPPTGGQGLNTAIQDA  310



Lambda      K        H        a         alpha
   0.320    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00029265

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 7...  512     0.0  


>CDD:397638 pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76.  Family 
of alpha-1,6-mannanases.
Length=348

 Score = 512 bits (1321),  Expect = 0.0, Method: Composition-based stats.
 Identities = 219/354 (62%), Positives = 265/354 (75%), Gaps = 7/354 (2%)

Query  27   SIKQAAHHVAANMLSHYTGMKPGDNPGNLPPPYYWWEAGAMFNALIDYWYLTGDSTWNAI  86
            SIK AA  +A  ++ +Y G +PG  PG LP PYYWWEAGAMF ALIDYWY TGDST+N +
Sbjct  1    SIKSAAATIAQGLMDYYNGNEPGGTPGMLPDPYYWWEAGAMFGALIDYWYYTGDSTYNDL  60

Query  87   TTQALTWQAGHTGTFMPTNQTKTEGNDDQAFWAFAAMSAAERNFPDPDPDHGPGWLAMAQ  146
             TQAL +QAG    +MP NQ+ TEGNDDQ FW  AAM+AAERNFP P  +  P WLA+AQ
Sbjct  61   ITQALLYQAGPNYDYMPANQSTTEGNDDQGFWGLAAMTAAERNFPPPTDE--PSWLALAQ  118

Query  147  AVFNTQAARWDEDTCGGGLRWQIFSFNNGWNYKNTISNGCFFHLAARLARYTGNRTYAEW  206
            AVFNTQA+RWD +TCGGGLRWQIF +N+G++YKN+ISNGC F LAARLARYTGN+TY +W
Sbjct  119  AVFNTQASRWDTETCGGGLRWQIFPWNSGYDYKNSISNGCLFQLAARLARYTGNQTYLDW  178

Query  207  AERVWDWTVDVGFI-TDDWLFYDGADVLLNCSDLNRIEWTYNSGVYLLGAANMYNCYKTE  265
            AE+VWDW+VDVG I  DDWL YDGADV  NC+D+N+++WTYN G YL GAA MYN     
Sbjct  179  AEKVWDWSVDVGLIDDDDWLVYDGADVNDNCTDINKLQWTYNQGTYLSGAAYMYNYT---  235

Query  266  GDSRWEARTKHILQATDAFFAEDPAMVMYERACELVDTCQVDQRAFKGFLARWMAAATQV  325
            GD +W  R + +L AT + F      +MYE ACE   TC  DQR+FKG L+RW+A   Q+
Sbjct  236  GDEKWLDRAEGLLNATLSHFF-PDGNIMYEVACEPSTTCNNDQRSFKGILSRWLALTAQL  294

Query  326  APFTYDWVMPRLRASAAAAARTCTGGPDGAACGLKWTTGVWDGSEDVGLQMSAL  379
            APFT D ++P+LRASA AAA++C+GG DG  CGL+W  G WDG   +G QMSAL
Sbjct  295  APFTADTILPKLRASAEAAAKSCSGGSDGTTCGLRWLKGTWDGDYGLGEQMSAL  348



Lambda      K        H        a         alpha
   0.320    0.134    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00034325

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00034326

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00029268

Length=249


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00029269

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395174 pfam00230, MIP, Major intrinsic protein. MIP (Major In...  102     7e-27


>CDD:395174 pfam00230, MIP, Major intrinsic protein.  MIP (Major Intrinsic 
Protein) family proteins exhibit essentially two distinct 
types of channel properties: (1) specific water transport by 
the aquaporins, and (2) small neutral solutes transport, such 
as glycerol by the glycerol facilitators.
Length=223

 Score = 102 bits (256),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 17/172 (10%)

Query  100  REPLAEWLGTT--VAMTLGLCAGLQTYTSQNQAGSFSSLAPAWGFAFMIAIYMAGGVSGG  157
            R  +AE+L T   V   +G   G++   S        ++A A+G A    +Y AG +SG 
Sbjct  9    RAVIAEFLATLLFVFFGVGSALGVKKLVSSLAVSGLLAVALAFGLALATLVYCAGHISGA  68

Query  158  HLNPAITISMAVWRGFPARKCMVYVAAQIVGSIPAGGIAYALYHDAIVDSALANHVTQGE  217
            HLNPA+T+++ V R F   + + Y+ AQ++G+I    + Y +          AN +  G 
Sbjct  69   HLNPAVTLALLVGRRFSLLRAIFYIVAQLLGAIAGAALLYGVTVGLQRAGLFANTLAPGV  128

Query  218  SPARQALLTAPKDFAHPVTAFFNEFVGTAILVGTIMALGDDTNAPPGGGHAG  269
            +  +               AF  E + T  LV  + A  DD      G  A 
Sbjct  129  NAGQ---------------AFVVEIILTFQLVYCVFATTDDRRNGSLGTVAP  165



Lambda      K        H        a         alpha
   0.318    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00029270

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00029267

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395174 pfam00230, MIP, Major intrinsic protein. MIP (Major In...  102     7e-27


>CDD:395174 pfam00230, MIP, Major intrinsic protein.  MIP (Major Intrinsic 
Protein) family proteins exhibit essentially two distinct 
types of channel properties: (1) specific water transport by 
the aquaporins, and (2) small neutral solutes transport, such 
as glycerol by the glycerol facilitators.
Length=223

 Score = 102 bits (256),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 17/172 (10%)

Query  100  REPLAEWLGTT--VAMTLGLCAGLQTYTSQNQAGSFSSLAPAWGFAFMIAIYMAGGVSGG  157
            R  +AE+L T   V   +G   G++   S        ++A A+G A    +Y AG +SG 
Sbjct  9    RAVIAEFLATLLFVFFGVGSALGVKKLVSSLAVSGLLAVALAFGLALATLVYCAGHISGA  68

Query  158  HLNPAITISMAVWRGFPARKCMVYVAAQIVGSIPAGGIAYALYHDAIVDSALANHVTQGE  217
            HLNPA+T+++ V R F   + + Y+ AQ++G+I    + Y +          AN +  G 
Sbjct  69   HLNPAVTLALLVGRRFSLLRAIFYIVAQLLGAIAGAALLYGVTVGLQRAGLFANTLAPGV  128

Query  218  SPARQALLTAPKDFAHPVTAFFNEFVGTAILVGTIMALGDDTNAPPGGGHAG  269
            +  +               AF  E + T  LV  + A  DD      G  A 
Sbjct  129  NAGQ---------------AFVVEIILTFQLVYCVFATTDDRRNGSLGTVAP  165



Lambda      K        H        a         alpha
   0.318    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00029272

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00029271

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395174 pfam00230, MIP, Major intrinsic protein. MIP (Major In...  102     7e-27


>CDD:395174 pfam00230, MIP, Major intrinsic protein.  MIP (Major Intrinsic 
Protein) family proteins exhibit essentially two distinct 
types of channel properties: (1) specific water transport by 
the aquaporins, and (2) small neutral solutes transport, such 
as glycerol by the glycerol facilitators.
Length=223

 Score = 102 bits (256),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 17/172 (10%)

Query  100  REPLAEWLGTT--VAMTLGLCAGLQTYTSQNQAGSFSSLAPAWGFAFMIAIYMAGGVSGG  157
            R  +AE+L T   V   +G   G++   S        ++A A+G A    +Y AG +SG 
Sbjct  9    RAVIAEFLATLLFVFFGVGSALGVKKLVSSLAVSGLLAVALAFGLALATLVYCAGHISGA  68

Query  158  HLNPAITISMAVWRGFPARKCMVYVAAQIVGSIPAGGIAYALYHDAIVDSALANHVTQGE  217
            HLNPA+T+++ V R F   + + Y+ AQ++G+I    + Y +          AN +  G 
Sbjct  69   HLNPAVTLALLVGRRFSLLRAIFYIVAQLLGAIAGAALLYGVTVGLQRAGLFANTLAPGV  128

Query  218  SPARQALLTAPKDFAHPVTAFFNEFVGTAILVGTIMALGDDTNAPPGGGHAG  269
            +  +               AF  E + T  LV  + A  DD      G  A 
Sbjct  129  NAGQ---------------AFVVEIILTFQLVYCVFATTDDRRNGSLGTVAP  165



Lambda      K        H        a         alpha
   0.318    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00034327

Length=253


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00029273

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00029274

Length=382


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00029275

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00034328

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00029276

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00034329

Length=372


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 446726320


Query= TCONS_00029278

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396400 pfam01814, Hemerythrin, Hemerythrin HHE cation binding...  60.7    2e-12


>CDD:396400 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain. 
 Iteration of the HHE family found it to be related to Hemerythrin. 
It also demonstrated that what has been described 
as a single domain in fact consists of two cation binding domains. 
Members of this family occur all across nature and are 
involved in a variety of processes. For instance, in Nereis 
diversicolor hemerythrin binds Cadmium so as to protect the 
organism from toxicity. However Hemerythrin is classically 
described as Oxygen-binding through two attached Fe2+ ions. 
And the bacterial NorA is a regulator of response to NO, which 
suggests yet another set-up for its metal ligands. In Staphylococcus 
aureus the iron-sulfur cluster repair protein ScdA 
has been noted to be important when the organism switches 
to living in environments with low oxygen concentrations; 
perhaps this protein acts as an oxygen store or scavenger.
Length=128

 Score = 60.7 bits (147),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 30/121 (25%), Positives = 52/121 (43%), Gaps = 9/121 (7%)

Query  40   RITDTVKQDHREIEACYQRIINAKD------RDEQTRYQNLFTWELARHSIGEELVVYPA  93
             I + +  +HR +      +    D        +     +    EL  H   EE +++PA
Sbjct  1    TIIELLDAEHRRLRELLALLRALADALGDSHLRKLAELLDELVDELEAHHAAEEELLFPA  60

Query  94   FEKHLPDGISIAEKDRREHQTVKEKLKKFQNL---DPSNADFIPTIKSLMADLAEHIKEE  150
             E+  P G +  E  R+EH  ++E L++ + L       A F   +++L   L EHI +E
Sbjct  61   LERRSPGGEAPIEVLRKEHDEIRELLEELEALLKGAEPGAAFAELLEALAEWLREHIAKE  120

Query  151  E  151
            E
Sbjct  121  E  121



Lambda      K        H        a         alpha
   0.318    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00029279

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0933    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00034330

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00034331

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429333 pfam07173, GRDP-like, Glycine-rich domain-containing p...  60.8    3e-13


>CDD:429333 pfam07173, GRDP-like, Glycine-rich domain-containing protein-like. 
 This entry includes Arabidopsis Glycine-rich domain- 
containing protein 1 and 2 (GRDP1/2). They are involved in development 
and stress responses.
Length=139

 Score = 60.8 bits (148),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 26/46 (57%), Gaps = 2/46 (4%)

Query  16   LSRAITRYEYFLQLFKLRPGTT--LVPTLDIDLVWHTHQCSASMYK  59
            L  A+ RY+ FL L K  P     LVPT DIDL+WHTHQ     Y 
Sbjct  93   LEAAVQRYKGFLYLLKRNPEEFSFLVPTYDIDLIWHTHQLHPISYA  138



Lambda      K        H        a         alpha
   0.325    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029280

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429333 pfam07173, GRDP-like, Glycine-rich domain-containing p...  60.8    3e-13


>CDD:429333 pfam07173, GRDP-like, Glycine-rich domain-containing protein-like. 
 This entry includes Arabidopsis Glycine-rich domain- 
containing protein 1 and 2 (GRDP1/2). They are involved in development 
and stress responses.
Length=139

 Score = 60.8 bits (148),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 26/46 (57%), Gaps = 2/46 (4%)

Query  16   LSRAITRYEYFLQLFKLRPGTT--LVPTLDIDLVWHTHQCSASMYK  59
            L  A+ RY+ FL L K  P     LVPT DIDL+WHTHQ     Y 
Sbjct  93   LEAAVQRYKGFLYLLKRNPEEFSFLVPTYDIDLIWHTHQLHPISYA  138



Lambda      K        H        a         alpha
   0.325    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00034333

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429333 pfam07173, GRDP-like, Glycine-rich domain-containing p...  68.5    5e-15


>CDD:429333 pfam07173, GRDP-like, Glycine-rich domain-containing protein-like. 
 This entry includes Arabidopsis Glycine-rich domain- 
containing protein 1 and 2 (GRDP1/2). They are involved in development 
and stress responses.
Length=139

 Score = 68.5 bits (168),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 30/77 (39%), Positives = 37/77 (48%), Gaps = 10/77 (13%)

Query  107  LFDAIERQRVFVDKMVGYLWIRSPGVHGT--LSRAITRYEYFLQLFKLRPGTT--LVPTL  162
            L  A++RQR F  ++        P       L  A+ RY+ FL L K  P     LVPT 
Sbjct  68   LVSAVKRQRDFYYQVS------LPHYSDEVFLEAAVQRYKGFLYLLKRNPEEFSFLVPTY  121

Query  163  DIDLVWHTHQCSASMYK  179
            DIDL+WHTHQ     Y 
Sbjct  122  DIDLIWHTHQLHPISYA  138



Lambda      K        H        a         alpha
   0.323    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00034332

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429333 pfam07173, GRDP-like, Glycine-rich domain-containing p...  60.8    3e-13


>CDD:429333 pfam07173, GRDP-like, Glycine-rich domain-containing protein-like. 
 This entry includes Arabidopsis Glycine-rich domain- 
containing protein 1 and 2 (GRDP1/2). They are involved in development 
and stress responses.
Length=139

 Score = 60.8 bits (148),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 26/46 (57%), Gaps = 2/46 (4%)

Query  16   LSRAITRYEYFLQLFKLRPGTT--LVPTLDIDLVWHTHQCSASMYK  59
            L  A+ RY+ FL L K  P     LVPT DIDL+WHTHQ     Y 
Sbjct  93   LEAAVQRYKGFLYLLKRNPEEFSFLVPTYDIDLIWHTHQLHPISYA  138



Lambda      K        H        a         alpha
   0.325    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029281

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429333 pfam07173, GRDP-like, Glycine-rich domain-containing p...  60.8    3e-13


>CDD:429333 pfam07173, GRDP-like, Glycine-rich domain-containing protein-like. 
 This entry includes Arabidopsis Glycine-rich domain- 
containing protein 1 and 2 (GRDP1/2). They are involved in development 
and stress responses.
Length=139

 Score = 60.8 bits (148),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 26/46 (57%), Gaps = 2/46 (4%)

Query  16   LSRAITRYEYFLQLFKLRPGTT--LVPTLDIDLVWHTHQCSASMYK  59
            L  A+ RY+ FL L K  P     LVPT DIDL+WHTHQ     Y 
Sbjct  93   LEAAVQRYKGFLYLLKRNPEEFSFLVPTYDIDLIWHTHQLHPISYA  138



Lambda      K        H        a         alpha
   0.325    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00029284

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         82.3    1e-19


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 82.3 bits (204),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 46/124 (37%), Positives = 63/124 (51%), Gaps = 7/124 (6%)

Query  23   LFVAFGGVLFGYDTGTISGILAMP-YWQELFSTGYRDPTGHPNITSSQSAAIVSILSAGT  81
            L  A GG LFGYDTG I   L +  +++    +            S  S  IVSI S G 
Sbjct  3    LVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAAL---SVLSGLIVSIFSVGC  59

Query  82   FFGALGAAPMGDRIGRRWGLIASAQVFNLGVILQTAATG---IPLFLAGRFFAGLGVGLI  138
            F G+L A  +GDR GR+  L+ +  +F +G +LQ AA G   +   + GR   G+GVG  
Sbjct  60   FIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGA  119

Query  139  SALS  142
            S L+
Sbjct  120  SVLA  123



Lambda      K        H        a         alpha
   0.324    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00029283

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         368     1e-123
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            65.1    5e-12 


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 368 bits (947),  Expect = 1e-123, Method: Composition-based stats.
 Identities = 170/473 (36%), Positives = 253/473 (53%), Gaps = 30/473 (6%)

Query  23   LFVAFGGVLFGYDTGTISGILAMP-YWQELFSTGYRDPTGHPNITSSQSAAIVSILSAGT  81
            L  A GG LFGYDTG I   L +  +++    +            S  S  IVSI S G 
Sbjct  3    LVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAAL---SVLSGLIVSIFSVGC  59

Query  82   FFGALGAAPMGDRIGRRWGLIASAQVFNLGVILQTAATG---IPLFLAGRFFAGLGVGLI  138
            F G+L A  +GDR GR+  L+ +  +F +G +LQ AA G   +   + GR   G+GVG  
Sbjct  60   FIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGA  119

Query  139  SALIPLYQSETAPKWIRGTIVGAYQLSITIGLLLASIVNNSTQNRMDTGCYRIPIAVQFA  198
            S L P+Y SE APK +RG +   YQL+IT G+LLA I         ++  +RIP+ +Q  
Sbjct  120  SVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLV  179

Query  199  WSIILVGGMLILPDTPRYLIKRGNIDGAARALGRLRRLPADDPAVREELAEIQANHEYEL  258
             +++L+ G+L LP++PR+L+++G ++ A   L +LR +P  D  + E    ++A      
Sbjct  180  PALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAG-----  234

Query  259  SLGKSTYLDCFKG--NLLKRLLTGCGLQALQQLTGINFIFYYGTQFFKNSGFKNSFTISL  316
               +              +RLL G  LQ  QQLTGIN IFYY T  F+N G  +SF +++
Sbjct  235  QEAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTI  294

Query  317  ITNCVNVGSTLPGLYAIEKWGRRPVLFWGAVGMCVSQFVVAIIGTTTTGQDAHGVIIVHN  376
            I   VN   T   ++ ++++GRRP+L  GA GM +   ++ I+           ++ V  
Sbjct  295  IVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIV----------ALLGVSK  344

Query  377  EPAQK-AAIAFICFYIFFFASTWGPSAWVVTGEIFPLKIRAKSLSMTTATNWLLNWAIAY  435
                   AI FI  +I FFA  WGP  WV+  E+FPL +R+K++++ TA NWL N+ I +
Sbjct  345  SDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGF  404

Query  436  STPYLVDYGPGNANLQSKIFFVWGGCCFLCISFVYFLIYETKGLTLEQVDELY  488
              P + D            FF++ G   L I FV+F + ETKG TLE++DEL+
Sbjct  405  LFPIITDAIGL-----GYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 65.1 bits (159),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 57/152 (38%), Gaps = 12/152 (8%)

Query  25   VAFGGVLFGYDTGTISGILAMPYWQELFSTGYRDPTGHPNITSSQSAAIVSILSAGTFFG  84
            +     L       +   L +   ++L             I+ ++   ++++ S G    
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDL------------GISPTEIGLLLTLFSLGYALA  48

Query  85   ALGAAPMGDRIGRRWGLIASAQVFNLGVILQTAATGIPLFLAGRFFAGLGVGLISALIPL  144
               A  + DR GRR  L+    +F LG++L   A+ + L L  R   GLG G +      
Sbjct  49   QPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALA  108

Query  145  YQSETAPKWIRGTIVGAYQLSITIGLLLASIV  176
              ++  P   RG  +G       +G  L  ++
Sbjct  109  LIADWFPPEERGRALGLVSAGFGLGAALGPLL  140



Lambda      K        H        a         alpha
   0.324    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 664674974


Query= TCONS_00029285

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00029286

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00029287

Length=246


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.124    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00034335

Length=696


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 889298370


Query= TCONS_00029288

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.500    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00029289

Length=671


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 852428620


Query= TCONS_00034336

Length=684


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 871600890


Query= TCONS_00029290

Length=588


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 741236288


Query= TCONS_00029291

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00029292

Length=791
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459783 pfam00365, PFK, Phosphofructokinase                        409     7e-139


>CDD:459783 pfam00365, PFK, Phosphofructokinase.  
Length=271

 Score = 409 bits (1053),  Expect = 7e-139, Method: Composition-based stats.
 Identities = 148/307 (48%), Positives = 194/307 (63%), Gaps = 36/307 (12%)

Query  15   RIGVLTSGGDAPGMNGAVRAVVRMAIYSDCEAYAVFEGYEGLVHGGHMIRQLHWEDVRGW  74
            RIG+LTSGGDAPGMN A+RAVVR AIY   E Y +  GYEGLV G   I +L W DV G 
Sbjct  1    RIGILTSGGDAPGMNAAIRAVVRTAIYRGHEVYGIRNGYEGLVEG--DIDELTWRDVSGI  58

Query  75   LSKGGTLIGSARSMAFRERAGRLKAAKNMVLRGIDALVVCGGDGSLTGADVFRSEWPGLL  134
            L++GGT++G++RS  F+   GR K A+N+   GIDALVV GGDGSLTGA+    E     
Sbjct  59   LNRGGTILGTSRSKPFKTEEGREKIAENLKKLGIDALVVIGGDGSLTGANKLSEER----  114

Query  135  EELVKNGELTEEQIEPYKVLNIVGLVGSIDNDMSGTDATIGCYSSLTRICDAVDDVFDTA  194
                               + +VG+  +IDND+ GTD TIG  ++L  I +A+D + DTA
Sbjct  115  ------------------GIPVVGIPKTIDNDIPGTDYTIGFDTALNTIVEAIDRIRDTA  156

Query  195  FSHQRGFVIEVMGRHCGWLALMSAISTGADWLFIPEMPPRDGWEDDMCSIITKNRKERGK  254
             SH R FV+EVMGRHCGWLALM+ ++ GAD + IPE+P      +++C  I + RK  GK
Sbjct  157  SSHNRVFVVEVMGRHCGWLALMAGLAGGADAILIPEIPFD---IEELCEKIKELRK--GK  211

Query  255  RRTIVIVAEGAQDRSLNKISSSTVKDILTQRLGLDTRVTVLGHTQRGGPACAYDRWLSTL  314
            R +I++VAEGA D          +  ++ +  G++TRVTVLGH QRGG   A+DR L+T 
Sbjct  212  RFSIIVVAEGASD-------GEFLAKLIEEGTGIETRVTVLGHVQRGGTPSAFDRILATR  264

Query  315  QGVEAVR  321
             GV+AV 
Sbjct  265  LGVKAVE  271


 Score = 313 bits (804),  Expect = 1e-101, Method: Composition-based stats.
 Identities = 110/297 (37%), Positives = 156/297 (53%), Gaps = 30/297 (10%)

Query  404  RIAIIHVGAPAGGMNQATRAAVGYCLTRGHTPLAIHNGFPGLCRHHDDQPVGSVREVKWL  463
            RI I+  G  A GMN A RA V   + RGH    I NG+ GL         G + E+ W 
Sbjct  1    RIGILTSGGDAPGMNAAIRAVVRTAIYRGHEVYGIRNGYEGLVE-------GDIDELTWR  53

Query  464  ESDAWVNEGGSDIGTNRSLPSEDFETTAMC---FEKYKFDALFVVGGFEAFTAVSQLRQA  520
            +    +N GG+ +GT+RS P +  E         +K   DAL V+GG  + T  ++L + 
Sbjct  54   DVSGILNRGGTILGTSRSKPFKTEEGREKIAENLKKLGIDALVVIGGDGSLTGANKLSEE  113

Query  521  RDKYPAFKIPMVVLPATISNNVPGTEYSLGSDTCLNTLIDFCDAIRQSASSSRRRVFVIE  580
            R       IP+V +P TI N++PGT+Y++G DT LNT+++  D I +  +SS  RVFV+E
Sbjct  114  RG------IPVVGIPKTIDNDIPGTDYTIGFDTALNTIVEAIDRI-RDTASSHNRVFVVE  166

Query  581  TQGGKSGYIATTAGLAVGATAVYIPEEGIDIKMLSNDIDFLRENFARDKGANRAGKLILR  640
              G   G++A  AGLA GA A+ IPE   DI+ L   I  LR+         +   +I+ 
Sbjct  167  VMGRHCGWLALMAGLAGGADAILIPEIPFDIEELCEKIKELRK--------GKRFSIIVV  218

Query  641  NECASSTYTTQVIADIFKEEAKGRFESRSAVPGHFQQGGKPSPMDRIRALRMAVKCM  697
             E AS     + +A + +E      E+R  V GH Q+GG PS  DRI A R+ VK +
Sbjct  219  AEGAS---DGEFLAKLIEE--GTGIETRVTVLGHVQRGGTPSAFDRILATRLGVKAV  270



Lambda      K        H        a         alpha
   0.319    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1014240944


Query= TCONS_00034338

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459783 pfam00365, PFK, Phosphofructokinase                        320     6e-111


>CDD:459783 pfam00365, PFK, Phosphofructokinase.  
Length=271

 Score = 320 bits (824),  Expect = 6e-111, Method: Composition-based stats.
 Identities = 114/233 (49%), Positives = 148/233 (64%), Gaps = 27/233 (12%)

Query  15   RIGVLTSGGDAPGMNGAVRAVVRMAIYSDCEAYAVFEGYEGLVHGGHMIRQLHWEDVRGW  74
            RIG+LTSGGDAPGMN A+RAVVR AIY   E Y +  GYEGLV G   I +L W DV G 
Sbjct  1    RIGILTSGGDAPGMNAAIRAVVRTAIYRGHEVYGIRNGYEGLVEG--DIDELTWRDVSGI  58

Query  75   LSKGGTLIGSARSMAFRERAGRLKAAKNMVLRGIDALVVCGGDGSLTGADVFRSEWPGLL  134
            L++GGT++G++RS  F+   GR K A+N+   GIDALVV GGDGSLTGA+    E     
Sbjct  59   LNRGGTILGTSRSKPFKTEEGREKIAENLKKLGIDALVVIGGDGSLTGANKLSEER----  114

Query  135  EELVKNGELTEEQIEPYKVLNIVGLVGSIDNDMSGTDATIGCYSSLTRICDAVDDVFDTA  194
                               + +VG+  +IDND+ GTD TIG  ++L  I +A+D + DTA
Sbjct  115  ------------------GIPVVGIPKTIDNDIPGTDYTIGFDTALNTIVEAIDRIRDTA  156

Query  195  FSHQRGFVIEVMGRHCGWLALMSAISTGADWLFIPEMPPRDGWEDDMCSIITK  247
             SH R FV+EVMGRHCGWLALM+ ++ GAD + IPE+P      +++C  I +
Sbjct  157  SSHNRVFVVEVMGRHCGWLALMAGLAGGADAILIPEIPFD---IEELCEKIKE  206



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00029293

Length=412
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459783 pfam00365, PFK, Phosphofructokinase                        408     7e-144


>CDD:459783 pfam00365, PFK, Phosphofructokinase.  
Length=271

 Score = 408 bits (1052),  Expect = 7e-144, Method: Composition-based stats.
 Identities = 148/307 (48%), Positives = 194/307 (63%), Gaps = 36/307 (12%)

Query  15   RIGVLTSGGDAPGMNGAVRAVVRMAIYSDCEAYAVFEGYEGLVHGGHMIRQLHWEDVRGW  74
            RIG+LTSGGDAPGMN A+RAVVR AIY   E Y +  GYEGLV G   I +L W DV G 
Sbjct  1    RIGILTSGGDAPGMNAAIRAVVRTAIYRGHEVYGIRNGYEGLVEG--DIDELTWRDVSGI  58

Query  75   LSKGGTLIGSARSMAFRERAGRLKAAKNMVLRGIDALVVCGGDGSLTGADVFRSEWPGLL  134
            L++GGT++G++RS  F+   GR K A+N+   GIDALVV GGDGSLTGA+    E     
Sbjct  59   LNRGGTILGTSRSKPFKTEEGREKIAENLKKLGIDALVVIGGDGSLTGANKLSEER----  114

Query  135  EELVKNGELTEEQIEPYKVLNIVGLVGSIDNDMSGTDATIGCYSSLTRICDAVDDVFDTA  194
                               + +VG+  +IDND+ GTD TIG  ++L  I +A+D + DTA
Sbjct  115  ------------------GIPVVGIPKTIDNDIPGTDYTIGFDTALNTIVEAIDRIRDTA  156

Query  195  FSHQRGFVIEVMGRHCGWLALMSAISTGADWLFIPEMPPRDGWEDDMCSIITKNRKERGK  254
             SH R FV+EVMGRHCGWLALM+ ++ GAD + IPE+P      +++C  I + RK  GK
Sbjct  157  SSHNRVFVVEVMGRHCGWLALMAGLAGGADAILIPEIPFD---IEELCEKIKELRK--GK  211

Query  255  RRTIVIVAEGAQDRSLNKISSSTVKDILTQRLGLDTRVTVLGHTQRGGPACAYDRWLSTL  314
            R +I++VAEGA D          +  ++ +  G++TRVTVLGH QRGG   A+DR L+T 
Sbjct  212  RFSIIVVAEGASD-------GEFLAKLIEEGTGIETRVTVLGHVQRGGTPSAFDRILATR  264

Query  315  QGVEAVR  321
             GV+AV 
Sbjct  265  LGVKAVE  271



Lambda      K        H        a         alpha
   0.320    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 501729466


Query= TCONS_00034339

Length=743
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459783 pfam00365, PFK, Phosphofructokinase                        405     3e-138


>CDD:459783 pfam00365, PFK, Phosphofructokinase.  
Length=271

 Score = 405 bits (1045),  Expect = 3e-138, Method: Composition-based stats.
 Identities = 148/307 (48%), Positives = 194/307 (63%), Gaps = 36/307 (12%)

Query  15   RIGVLTSGGDAPGMNGAVRAVVRMAIYSDCEAYAVFEGYEGLVHGGHMIRQLHWEDVRGW  74
            RIG+LTSGGDAPGMN A+RAVVR AIY   E Y +  GYEGLV G   I +L W DV G 
Sbjct  1    RIGILTSGGDAPGMNAAIRAVVRTAIYRGHEVYGIRNGYEGLVEG--DIDELTWRDVSGI  58

Query  75   LSKGGTLIGSARSMAFRERAGRLKAAKNMVLRGIDALVVCGGDGSLTGADVFRSEWPGLL  134
            L++GGT++G++RS  F+   GR K A+N+   GIDALVV GGDGSLTGA+    E     
Sbjct  59   LNRGGTILGTSRSKPFKTEEGREKIAENLKKLGIDALVVIGGDGSLTGANKLSEER----  114

Query  135  EELVKNGELTEEQIEPYKVLNIVGLVGSIDNDMSGTDATIGCYSSLTRICDAVDDVFDTA  194
                               + +VG+  +IDND+ GTD TIG  ++L  I +A+D + DTA
Sbjct  115  ------------------GIPVVGIPKTIDNDIPGTDYTIGFDTALNTIVEAIDRIRDTA  156

Query  195  FSHQRGFVIEVMGRHCGWLALMSAISTGADWLFIPEMPPRDGWEDDMCSIITKNRKERGK  254
             SH R FV+EVMGRHCGWLALM+ ++ GAD + IPE+P      +++C  I + RK  GK
Sbjct  157  SSHNRVFVVEVMGRHCGWLALMAGLAGGADAILIPEIPFD---IEELCEKIKELRK--GK  211

Query  255  RRTIVIVAEGAQDRSLNKISSSTVKDILTQRLGLDTRVTVLGHTQRGGPACAYDRWLSTL  314
            R +I++VAEGA D          +  ++ +  G++TRVTVLGH QRGG   A+DR L+T 
Sbjct  212  RFSIIVVAEGASD-------GEFLAKLIEEGTGIETRVTVLGHVQRGGTPSAFDRILATR  264

Query  315  QGVEAVR  321
             GV+AV 
Sbjct  265  LGVKAVE  271


 Score = 310 bits (798),  Expect = 3e-101, Method: Composition-based stats.
 Identities = 110/297 (37%), Positives = 156/297 (53%), Gaps = 30/297 (10%)

Query  404  RIAIIHVGAPAGGMNQATRAAVGYCLTRGHTPLAIHNGFPGLCRHHDDQPVGSVREVKWL  463
            RI I+  G  A GMN A RA V   + RGH    I NG+ GL         G + E+ W 
Sbjct  1    RIGILTSGGDAPGMNAAIRAVVRTAIYRGHEVYGIRNGYEGLVE-------GDIDELTWR  53

Query  464  ESDAWVNEGGSDIGTNRSLPSEDFETTAMC---FEKYKFDALFVVGGFEAFTAVSQLRQA  520
            +    +N GG+ +GT+RS P +  E         +K   DAL V+GG  + T  ++L + 
Sbjct  54   DVSGILNRGGTILGTSRSKPFKTEEGREKIAENLKKLGIDALVVIGGDGSLTGANKLSEE  113

Query  521  RDKYPAFKIPMVVLPATISNNVPGTEYSLGSDTCLNTLIDFCDAIRQSASSSRRRVFVIE  580
            R       IP+V +P TI N++PGT+Y++G DT LNT+++  D I +  +SS  RVFV+E
Sbjct  114  RG------IPVVGIPKTIDNDIPGTDYTIGFDTALNTIVEAIDRI-RDTASSHNRVFVVE  166

Query  581  TQGGKSGYIATTAGLAVGATAVYIPEEGIDIKMLSNDIDFLRENFARDKGANRAGKLILR  640
              G   G++A  AGLA GA A+ IPE   DI+ L   I  LR+         +   +I+ 
Sbjct  167  VMGRHCGWLALMAGLAGGADAILIPEIPFDIEELCEKIKELRK--------GKRFSIIVV  218

Query  641  NECASSTYTTQVIADIFKEEAKGRFESRSAVPGHFQQGGKPSPMDRIRALRMAVKCM  697
             E AS     + +A + +E      E+R  V GH Q+GG PS  DRI A R+ VK +
Sbjct  219  AEGAS---DGEFLAKLIEE--GTGIETRVTVLGHVQRGGTPSAFDRILATRLGVKAV  270



Lambda      K        H        a         alpha
   0.319    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 944393648


Query= TCONS_00029294

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459783 pfam00365, PFK, Phosphofructokinase                        313     1e-106


>CDD:459783 pfam00365, PFK, Phosphofructokinase.  
Length=271

 Score = 313 bits (806),  Expect = 1e-106, Method: Composition-based stats.
 Identities = 110/297 (37%), Positives = 156/297 (53%), Gaps = 30/297 (10%)

Query  79   RIAIIHVGAPAGGMNQATRAAVGYCLTRGHTPLAIHNGFPGLCRHHDDQPVGSVREVKWL  138
            RI I+  G  A GMN A RA V   + RGH    I NG+ GL         G + E+ W 
Sbjct  1    RIGILTSGGDAPGMNAAIRAVVRTAIYRGHEVYGIRNGYEGLVE-------GDIDELTWR  53

Query  139  ESDAWVNEGGSDIGTNRSLPSEDFETTAMC---FEKYKFDALFVVGGFEAFTAVSQLRQA  195
            +    +N GG+ +GT+RS P +  E         +K   DAL V+GG  + T  ++L + 
Sbjct  54   DVSGILNRGGTILGTSRSKPFKTEEGREKIAENLKKLGIDALVVIGGDGSLTGANKLSEE  113

Query  196  RDKYPAFKIPMVVLPATISNNVPGTEYSLGSDTCLNTLIDFCDAIRQSASSSRRRVFVIE  255
            R       IP+V +P TI N++PGT+Y++G DT LNT+++  D I +  +SS  RVFV+E
Sbjct  114  RG------IPVVGIPKTIDNDIPGTDYTIGFDTALNTIVEAIDRI-RDTASSHNRVFVVE  166

Query  256  TQGGKSGYIATTAGLAVGATAVYIPEEGIDIKMLSNDIDFLRENFARDKGANRAGKLILR  315
              G   G++A  AGLA GA A+ IPE   DI+ L   I  LR+         +   +I+ 
Sbjct  167  VMGRHCGWLALMAGLAGGADAILIPEIPFDIEELCEKIKELRK--------GKRFSIIVV  218

Query  316  NECASSTYTTQVIADIFKEEAKGRFESRSAVPGHFQQGGKPSPMDRIRALRMAVKCM  372
             E AS     + +A + +E      E+R  V GH Q+GG PS  DRI A R+ VK +
Sbjct  219  AEGAS---DGEFLAKLIEE--GTGIETRVTVLGHVQRGGTPSAFDRILATRLGVKAV  270



Lambda      K        H        a         alpha
   0.319    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00029295

Length=808
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459783 pfam00365, PFK, Phosphofructokinase                        410     5e-139


>CDD:459783 pfam00365, PFK, Phosphofructokinase.  
Length=271

 Score = 410 bits (1056),  Expect = 5e-139, Method: Composition-based stats.
 Identities = 148/307 (48%), Positives = 194/307 (63%), Gaps = 36/307 (12%)

Query  15   RIGVLTSGGDAPGMNGAVRAVVRMAIYSDCEAYAVFEGYEGLVHGGHMIRQLHWEDVRGW  74
            RIG+LTSGGDAPGMN A+RAVVR AIY   E Y +  GYEGLV G   I +L W DV G 
Sbjct  1    RIGILTSGGDAPGMNAAIRAVVRTAIYRGHEVYGIRNGYEGLVEG--DIDELTWRDVSGI  58

Query  75   LSKGGTLIGSARSMAFRERAGRLKAAKNMVLRGIDALVVCGGDGSLTGADVFRSEWPGLL  134
            L++GGT++G++RS  F+   GR K A+N+   GIDALVV GGDGSLTGA+    E     
Sbjct  59   LNRGGTILGTSRSKPFKTEEGREKIAENLKKLGIDALVVIGGDGSLTGANKLSEER----  114

Query  135  EELVKNGELTEEQIEPYKVLNIVGLVGSIDNDMSGTDATIGCYSSLTRICDAVDDVFDTA  194
                               + +VG+  +IDND+ GTD TIG  ++L  I +A+D + DTA
Sbjct  115  ------------------GIPVVGIPKTIDNDIPGTDYTIGFDTALNTIVEAIDRIRDTA  156

Query  195  FSHQRGFVIEVMGRHCGWLALMSAISTGADWLFIPEMPPRDGWEDDMCSIITKNRKERGK  254
             SH R FV+EVMGRHCGWLALM+ ++ GAD + IPE+P      +++C  I + RK  GK
Sbjct  157  SSHNRVFVVEVMGRHCGWLALMAGLAGGADAILIPEIPFD---IEELCEKIKELRK--GK  211

Query  255  RRTIVIVAEGAQDRSLNKISSSTVKDILTQRLGLDTRVTVLGHTQRGGPACAYDRWLSTL  314
            R +I++VAEGA D          +  ++ +  G++TRVTVLGH QRGG   A+DR L+T 
Sbjct  212  RFSIIVVAEGASD-------GEFLAKLIEEGTGIETRVTVLGHVQRGGTPSAFDRILATR  264

Query  315  QGVEAVR  321
             GV+AV 
Sbjct  265  LGVKAVE  271


 Score = 313 bits (806),  Expect = 7e-102, Method: Composition-based stats.
 Identities = 110/297 (37%), Positives = 156/297 (53%), Gaps = 30/297 (10%)

Query  404  RIAIIHVGAPAGGMNQATRAAVGYCLTRGHTPLAIHNGFPGLCRHHDDQPVGSVREVKWL  463
            RI I+  G  A GMN A RA V   + RGH    I NG+ GL         G + E+ W 
Sbjct  1    RIGILTSGGDAPGMNAAIRAVVRTAIYRGHEVYGIRNGYEGLVE-------GDIDELTWR  53

Query  464  ESDAWVNEGGSDIGTNRSLPSEDFETTAMC---FEKYKFDALFVVGGFEAFTAVSQLRQA  520
            +    +N GG+ +GT+RS P +  E         +K   DAL V+GG  + T  ++L + 
Sbjct  54   DVSGILNRGGTILGTSRSKPFKTEEGREKIAENLKKLGIDALVVIGGDGSLTGANKLSEE  113

Query  521  RDKYPAFKIPMVVLPATISNNVPGTEYSLGSDTCLNTLIDFCDAIRQSASSSRRRVFVIE  580
            R       IP+V +P TI N++PGT+Y++G DT LNT+++  D I +  +SS  RVFV+E
Sbjct  114  RG------IPVVGIPKTIDNDIPGTDYTIGFDTALNTIVEAIDRI-RDTASSHNRVFVVE  166

Query  581  TQGGKSGYIATTAGLAVGATAVYIPEEGIDIKMLSNDIDFLRENFARDKGANRAGKLILR  640
              G   G++A  AGLA GA A+ IPE   DI+ L   I  LR+         +   +I+ 
Sbjct  167  VMGRHCGWLALMAGLAGGADAILIPEIPFDIEELCEKIKELRK--------GKRFSIIVV  218

Query  641  NECASSTYTTQVIADIFKEEAKGRFESRSAVPGHFQQGGKPSPMDRIRALRMAVKCM  697
             E AS     + +A + +E      E+R  V GH Q+GG PS  DRI A R+ VK +
Sbjct  219  AEGAS---DGEFLAKLIEE--GTGIETRVTVLGHVQRGGTPSAFDRILATRLGVKAV  270



Lambda      K        H        a         alpha
   0.319    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1038978528


Query= TCONS_00029296

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459783 pfam00365, PFK, Phosphofructokinase                        231     7e-76


>CDD:459783 pfam00365, PFK, Phosphofructokinase.  
Length=271

 Score = 231 bits (592),  Expect = 7e-76, Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 113/204 (55%), Gaps = 20/204 (10%)

Query  3    FEKYKFDALFVVGGFEAFTAVSQLRQARDKYPAFKIPMVVLPATISNNVPGTEYSLGSDT  62
             +K   DAL V+GG  + T  ++L + R       IP+V +P TI N++PGT+Y++G DT
Sbjct  87   LKKLGIDALVVIGGDGSLTGANKLSEERG------IPVVGIPKTIDNDIPGTDYTIGFDT  140

Query  63   CLNTLIDFCDAIRQSASSSRRRVFVIETQGGKSGYIATTAGLAVGATAVYIPEEGIDIKM  122
             LNT+++  D I +  +SS  RVFV+E  G   G++A  AGLA GA A+ IPE   DI+ 
Sbjct  141  ALNTIVEAIDRI-RDTASSHNRVFVVEVMGRHCGWLALMAGLAGGADAILIPEIPFDIEE  199

Query  123  LSNDIDFLRENFARDKGANRAGKLILRNECASSTYTTQVIADIFKEEAKGRFESRSAVPG  182
            L   I  LR+         +   +I+  E AS     + +A + +E      E+R  V G
Sbjct  200  LCEKIKELRK--------GKRFSIIVVAEGAS---DGEFLAKLIEE--GTGIETRVTVLG  246

Query  183  HFQQGGKPSPMDRIRALRMAVKCM  206
            H Q+GG PS  DRI A R+ VK +
Sbjct  247  HVQRGGTPSAFDRILATRLGVKAV  270



Lambda      K        H        a         alpha
   0.319    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00029297

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00034340

Length=382


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00029298

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00034341

Length=324


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0814    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00029299

Length=334


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00034342

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00034343

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00029300

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00029301

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00029302

Length=442
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  70.2    4e-14


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 70.2 bits (172),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 69/190 (36%), Gaps = 21/190 (11%)

Query  92   LQRFLSTLYHLVPFWSKELYERQLETLYLPSSGTGSDTCTNSILLMALAMGSLGTQ----  147
            L  F    +   P     L+       Y     + S+  +  +LL  LA+G+L ++    
Sbjct  1    LDLFFKNFHPQFPI----LHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA  56

Query  148  ----------RYRWGDILFERVKASCPSWDDVVNLETVQLSLMMAHYQTEQGRPNSSFLY  197
                             L   +           +L  +Q  L++  Y+   G     + Y
Sbjct  57   RSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRY  116

Query  198  LGTAARKAISAGLHKESPTEGGEGR---EMVEQRRLTFWSLFFYETWICFHLGRPSSLSS  254
             G A R A S GLH++        +   E  E RR  FW+ F+ +  I   LGRP  LS 
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSD  176

Query  255  RDVGIAPPKD  264
             D+ +  P D
Sbjct  177  SDIDLPLPCD  186



Lambda      K        H        a         alpha
   0.322    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 539863808


Query= TCONS_00029304

Length=705
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  72.5    1e-14


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 72.5 bits (178),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 69/190 (36%), Gaps = 21/190 (11%)

Query  200  LQRFLSTLYHLVPFWSKELYERQLETLYLPSSGTGSDTCTNSILLMALAMGSLGTQ----  255
            L  F    +   P     L+       Y     + S+  +  +LL  LA+G+L ++    
Sbjct  1    LDLFFKNFHPQFPI----LHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA  56

Query  256  ----------RYRWGDILFERVKASCPSWDDVVNLETVQLSLMMAHYQTEQGRPNSSFLY  305
                             L   +           +L  +Q  L++  Y+   G     + Y
Sbjct  57   RSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRY  116

Query  306  LGTAARKAISAGLHKESPTEGGEGR---EMVEQRRLTFWSLFFYETWICFHLGRPSSLSS  362
             G A R A S GLH++        +   E  E RR  FW+ F+ +  I   LGRP  LS 
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSD  176

Query  363  RDVGIAPPKD  372
             D+ +  P D
Sbjct  177  SDIDLPLPCD  186



Lambda      K        H        a         alpha
   0.320    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 902571480


Query= TCONS_00029305

Length=588


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 741236288


Query= TCONS_00034345

Length=475


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 590476040


Query= TCONS_00034344

Length=469


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581273816


Query= TCONS_00034346

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  62.1    1e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 62.1 bits (151),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 36/174 (21%), Positives = 60/174 (34%), Gaps = 24/174 (14%)

Query  200  LQRFLSTLYHLVPFWSKELYERQLETLYLPSSGTGSDTCTNSILLMALAMGSLGTQ----  255
            L  F    +   P     L+       Y     + S+  +  +LL  LA+G+L ++    
Sbjct  1    LDLFFKNFHPQFPI----LHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA  56

Query  256  ----------RYRWGDILFERVKASCPSWDDVVNLETVQLSLMMAHYQTEQGRPNSSFLY  305
                             L   +           +L  +Q  L++  Y+   G     + Y
Sbjct  57   RSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRY  116

Query  306  LGTAARKAISAGLHKESPTEGGEGR---EMVEQRRLTFWSLFFYETF---VLGH  353
             G A R A S GLH++        +   E  E RR  FW+ F+ +     +LG 
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGR  170



Lambda      K        H        a         alpha
   0.319    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00029306

Length=811
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  99.0    3e-25
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  81.0    7e-19
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  61.1    2e-12


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 99.0 bits (247),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 12/112 (11%)

Query  361  RRIVMNLLGNSFKFT-KSGFIEVTLARKMEGTGGTKRVYAHLTITDTGCGIAPEYLEHKL  419
            R+++ NLL N+ K   K+G I VTL+   E T         LT+ D G GI PE L   +
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEGGELT---------LTVEDNGIGIPPEDLPR-I  56

Query  420  FQPFTQED-ILTEGVGLGLSIVDRLVTNAGGQIDVKSTVGIGTQFEVYIPVE  470
            F+PF+  D     G GLGLSIV +LV   GG I V+S  G GT   + +P+ 
Sbjct  57   FEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLA  108


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 81.0 bits (201),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 58/129 (45%), Gaps = 22/129 (17%)

Query  676  VLIVDDNDINLKILATFMRRIGCSYETATNGLVALEKYQQAQRQFNYVLMGRLPLLGVMV  735
            VLIVDD+ +  ++L   + + G     A +G  ALE  +  + + + +L+          
Sbjct  1    VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLK--EERPDLILL----------  48

Query  736  QLTAIDLSMPVMDGIISTSKIREYEEENSLPRAAIMAVTGVASATMQQQAFAAGIDDFLV  795
                 D++MP MDG+    +IR    + + P   ++ +T         +A  AG DDFL 
Sbjct  49   -----DINMPGMDGLELLKRIR--RRDPTTP---VIILTAHGDEDDAVEALEAGADDFLS  98

Query  796  KPLSLRDLK  804
            KP    +L 
Sbjct  99   KPFDPDELL  107


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 61.1 bits (149),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/65 (37%), Positives = 37/65 (57%), Gaps = 0/65 (0%)

Query  202  SKSDLLSSVSHELRSPLHGMLASVELLRTTDLQPAQLDMLTMIETCGLTLMDTLNYLLDF  261
            +KS+ L+++SHELR+PL  +   +ELLR   L   Q + L  I      L+  +N LLD 
Sbjct  1    AKSEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQREYLETILRSAERLLRLINDLLDL  60

Query  262  TKINN  266
            ++I  
Sbjct  61   SRIEA  65



Lambda      K        H        a         alpha
   0.317    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1043343984


Query= TCONS_00034348

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  62.1    1e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 62.1 bits (151),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 36/174 (21%), Positives = 60/174 (34%), Gaps = 24/174 (14%)

Query  200  LQRFLSTLYHLVPFWSKELYERQLETLYLPSSGTGSDTCTNSILLMALAMGSLGTQ----  255
            L  F    +   P     L+       Y     + S+  +  +LL  LA+G+L ++    
Sbjct  1    LDLFFKNFHPQFPI----LHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA  56

Query  256  ----------RYRWGDILFERVKASCPSWDDVVNLETVQLSLMMAHYQTEQGRPNSSFLY  305
                             L   +           +L  +Q  L++  Y+   G     + Y
Sbjct  57   RSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRY  116

Query  306  LGTAARKAISAGLHKESPTEGGEGR---EMVEQRRLTFWSLFFYETF---VLGH  353
             G A R A S GLH++        +   E  E RR  FW+ F+ +     +LG 
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGR  170



Lambda      K        H        a         alpha
   0.319    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00034349

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00034350

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  72.1    1e-14


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 72.1 bits (177),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 69/190 (36%), Gaps = 21/190 (11%)

Query  200  LQRFLSTLYHLVPFWSKELYERQLETLYLPSSGTGSDTCTNSILLMALAMGSLGTQ----  255
            L  F    +   P     L+       Y     + S+  +  +LL  LA+G+L ++    
Sbjct  1    LDLFFKNFHPQFPI----LHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA  56

Query  256  ----------RYRWGDILFERVKASCPSWDDVVNLETVQLSLMMAHYQTEQGRPNSSFLY  305
                             L   +           +L  +Q  L++  Y+   G     + Y
Sbjct  57   RSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRY  116

Query  306  LGTAARKAISAGLHKESPTEGGEGR---EMVEQRRLTFWSLFFYETWICFHLGRPSSLSS  362
             G A R A S GLH++        +   E  E RR  FW+ F+ +  I   LGRP  LS 
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSD  176

Query  363  RDVGIAPPKD  372
             D+ +  P D
Sbjct  177  SDIDLPLPCD  186



Lambda      K        H        a         alpha
   0.321    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00034351

Length=811
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  99.0    3e-25
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  81.0    7e-19
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  61.1    2e-12


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 99.0 bits (247),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 12/112 (11%)

Query  361  RRIVMNLLGNSFKFT-KSGFIEVTLARKMEGTGGTKRVYAHLTITDTGCGIAPEYLEHKL  419
            R+++ NLL N+ K   K+G I VTL+   E T         LT+ D G GI PE L   +
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEGGELT---------LTVEDNGIGIPPEDLPR-I  56

Query  420  FQPFTQED-ILTEGVGLGLSIVDRLVTNAGGQIDVKSTVGIGTQFEVYIPVE  470
            F+PF+  D     G GLGLSIV +LV   GG I V+S  G GT   + +P+ 
Sbjct  57   FEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLA  108


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 81.0 bits (201),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 58/129 (45%), Gaps = 22/129 (17%)

Query  676  VLIVDDNDINLKILATFMRRIGCSYETATNGLVALEKYQQAQRQFNYVLMGRLPLLGVMV  735
            VLIVDD+ +  ++L   + + G     A +G  ALE  +  + + + +L+          
Sbjct  1    VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLK--EERPDLILL----------  48

Query  736  QLTAIDLSMPVMDGIISTSKIREYEEENSLPRAAIMAVTGVASATMQQQAFAAGIDDFLV  795
                 D++MP MDG+    +IR    + + P   ++ +T         +A  AG DDFL 
Sbjct  49   -----DINMPGMDGLELLKRIR--RRDPTTP---VIILTAHGDEDDAVEALEAGADDFLS  98

Query  796  KPLSLRDLK  804
            KP    +L 
Sbjct  99   KPFDPDELL  107


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 61.1 bits (149),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/65 (37%), Positives = 37/65 (57%), Gaps = 0/65 (0%)

Query  202  SKSDLLSSVSHELRSPLHGMLASVELLRTTDLQPAQLDMLTMIETCGLTLMDTLNYLLDF  261
            +KS+ L+++SHELR+PL  +   +ELLR   L   Q + L  I      L+  +N LLD 
Sbjct  1    AKSEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQREYLETILRSAERLLRLINDLLDL  60

Query  262  TKINN  266
            ++I  
Sbjct  61   SRIEA  65



Lambda      K        H        a         alpha
   0.317    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1043343984


Query= TCONS_00029307

Length=811
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  99.0    3e-25
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  81.0    7e-19
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  61.1    2e-12


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 99.0 bits (247),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 12/112 (11%)

Query  361  RRIVMNLLGNSFKFT-KSGFIEVTLARKMEGTGGTKRVYAHLTITDTGCGIAPEYLEHKL  419
            R+++ NLL N+ K   K+G I VTL+   E T         LT+ D G GI PE L   +
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEGGELT---------LTVEDNGIGIPPEDLPR-I  56

Query  420  FQPFTQED-ILTEGVGLGLSIVDRLVTNAGGQIDVKSTVGIGTQFEVYIPVE  470
            F+PF+  D     G GLGLSIV +LV   GG I V+S  G GT   + +P+ 
Sbjct  57   FEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLA  108


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 81.0 bits (201),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 58/129 (45%), Gaps = 22/129 (17%)

Query  676  VLIVDDNDINLKILATFMRRIGCSYETATNGLVALEKYQQAQRQFNYVLMGRLPLLGVMV  735
            VLIVDD+ +  ++L   + + G     A +G  ALE  +  + + + +L+          
Sbjct  1    VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLK--EERPDLILL----------  48

Query  736  QLTAIDLSMPVMDGIISTSKIREYEEENSLPRAAIMAVTGVASATMQQQAFAAGIDDFLV  795
                 D++MP MDG+    +IR    + + P   ++ +T         +A  AG DDFL 
Sbjct  49   -----DINMPGMDGLELLKRIR--RRDPTTP---VIILTAHGDEDDAVEALEAGADDFLS  98

Query  796  KPLSLRDLK  804
            KP    +L 
Sbjct  99   KPFDPDELL  107


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 61.1 bits (149),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/65 (37%), Positives = 37/65 (57%), Gaps = 0/65 (0%)

Query  202  SKSDLLSSVSHELRSPLHGMLASVELLRTTDLQPAQLDMLTMIETCGLTLMDTLNYLLDF  261
            +KS+ L+++SHELR+PL  +   +ELLR   L   Q + L  I      L+  +N LLD 
Sbjct  1    AKSEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQREYLETILRSAERLLRLINDLLDL  60

Query  262  TKINN  266
            ++I  
Sbjct  61   SRIEA  65



Lambda      K        H        a         alpha
   0.317    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1043343984


Query= TCONS_00029308

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00029310

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  95.5    2e-24
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  79.9    1e-18


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 95.5 bits (238),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 12/112 (11%)

Query  39   RRIVMNLLGNSFKFT-KSGFIEVTLARKMEGTGGTKRVYAHLTITDTGCGIAPEYLEHKL  97
            R+++ NLL N+ K   K+G I VTL+   E T         LT+ D G GI PE L   +
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEGGELT---------LTVEDNGIGIPPEDLPR-I  56

Query  98   FQPFTQED-ILTEGVGLGLSIVDRLVTNAGGQIDVKSTVGIGTQFEVYIPVE  148
            F+PF+  D     G GLGLSIV +LV   GG I V+S  G GT   + +P+ 
Sbjct  57   FEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLA  108


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 79.9 bits (198),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 58/129 (45%), Gaps = 22/129 (17%)

Query  354  VLIVDDNDINLKILATFMRRIGCSYETATNGLVALEKYQQAQRQFNYVLMGRLPLLGVMV  413
            VLIVDD+ +  ++L   + + G     A +G  ALE  +  + + + +L+          
Sbjct  1    VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLK--EERPDLILL----------  48

Query  414  QLTAIDLSMPVMDGIISTSKIREYEEENSLPRAAIMAVTGVASATMQQQAFAAGIDDFLV  473
                 D++MP MDG+    +IR    + + P   ++ +T         +A  AG DDFL 
Sbjct  49   -----DINMPGMDGLELLKRIR--RRDPTTP---VIILTAHGDEDDAVEALEAGADDFLS  98

Query  474  KPLSLRDLK  482
            KP    +L 
Sbjct  99   KPFDPDELL  107



Lambda      K        H        a         alpha
   0.316    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00029309

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  95.5    2e-24
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  79.9    1e-18


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 95.5 bits (238),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 12/112 (11%)

Query  39   RRIVMNLLGNSFKFT-KSGFIEVTLARKMEGTGGTKRVYAHLTITDTGCGIAPEYLEHKL  97
            R+++ NLL N+ K   K+G I VTL+   E T         LT+ D G GI PE L   +
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEGGELT---------LTVEDNGIGIPPEDLPR-I  56

Query  98   FQPFTQED-ILTEGVGLGLSIVDRLVTNAGGQIDVKSTVGIGTQFEVYIPVE  148
            F+PF+  D     G GLGLSIV +LV   GG I V+S  G GT   + +P+ 
Sbjct  57   FEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLA  108


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 79.9 bits (198),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 58/129 (45%), Gaps = 22/129 (17%)

Query  354  VLIVDDNDINLKILATFMRRIGCSYETATNGLVALEKYQQAQRQFNYVLMGRLPLLGVMV  413
            VLIVDD+ +  ++L   + + G     A +G  ALE  +  + + + +L+          
Sbjct  1    VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLK--EERPDLILL----------  48

Query  414  QLTAIDLSMPVMDGIISTSKIREYEEENSLPRAAIMAVTGVASATMQQQAFAAGIDDFLV  473
                 D++MP MDG+    +IR    + + P   ++ +T         +A  AG DDFL 
Sbjct  49   -----DINMPGMDGLELLKRIR--RRDPTTP---VIILTAHGDEDDAVEALEAGADDFLS  98

Query  474  KPLSLRDLK  482
            KP    +L 
Sbjct  99   KPFDPDELL  107



Lambda      K        H        a         alpha
   0.316    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00029311

Length=642


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 809659710


Query= TCONS_00034352

Length=588


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 741236288


Query= TCONS_00029313

Length=296


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0814    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00029312

Length=658


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 833256350


Query= TCONS_00029314

Length=538
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  72.5    1e-14


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 72.5 bits (178),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 69/190 (36%), Gaps = 21/190 (11%)

Query  200  LQRFLSTLYHLVPFWSKELYERQLETLYLPSSGTGSDTCTNSILLMALAMGSLGTQ----  255
            L  F    +   P     L+       Y     + S+  +  +LL  LA+G+L ++    
Sbjct  1    LDLFFKNFHPQFPI----LHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTA  56

Query  256  ----------RYRWGDILFERVKASCPSWDDVVNLETVQLSLMMAHYQTEQGRPNSSFLY  305
                             L   +           +L  +Q  L++  Y+   G     + Y
Sbjct  57   RSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRY  116

Query  306  LGTAARKAISAGLHKESPTEGGEGR---EMVEQRRLTFWSLFFYETWICFHLGRPSSLSS  362
             G A R A S GLH++        +   E  E RR  FW+ F+ +  I   LGRP  LS 
Sbjct  117  HGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSD  176

Query  363  RDVGIAPPKD  372
             D+ +  P D
Sbjct  177  SDIDLPLPCD  186



Lambda      K        H        a         alpha
   0.321    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 676787502


Query= TCONS_00034354

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  95.5    2e-24
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  79.9    1e-18


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 95.5 bits (238),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 12/112 (11%)

Query  39   RRIVMNLLGNSFKFT-KSGFIEVTLARKMEGTGGTKRVYAHLTITDTGCGIAPEYLEHKL  97
            R+++ NLL N+ K   K+G I VTL+   E T         LT+ D G GI PE L   +
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEGGELT---------LTVEDNGIGIPPEDLPR-I  56

Query  98   FQPFTQED-ILTEGVGLGLSIVDRLVTNAGGQIDVKSTVGIGTQFEVYIPVE  148
            F+PF+  D     G GLGLSIV +LV   GG I V+S  G GT   + +P+ 
Sbjct  57   FEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLA  108


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 79.9 bits (198),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 58/129 (45%), Gaps = 22/129 (17%)

Query  354  VLIVDDNDINLKILATFMRRIGCSYETATNGLVALEKYQQAQRQFNYVLMGRLPLLGVMV  413
            VLIVDD+ +  ++L   + + G     A +G  ALE  +  + + + +L+          
Sbjct  1    VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLK--EERPDLILL----------  48

Query  414  QLTAIDLSMPVMDGIISTSKIREYEEENSLPRAAIMAVTGVASATMQQQAFAAGIDDFLV  473
                 D++MP MDG+    +IR    + + P   ++ +T         +A  AG DDFL 
Sbjct  49   -----DINMPGMDGLELLKRIR--RRDPTTP---VIILTAHGDEDDAVEALEAGADDFLS  98

Query  474  KPLSLRDLK  482
            KP    +L 
Sbjct  99   KPFDPDELL  107



Lambda      K        H        a         alpha
   0.316    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00034353

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  95.5    2e-24
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  79.9    1e-18


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 95.5 bits (238),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 12/112 (11%)

Query  39   RRIVMNLLGNSFKFT-KSGFIEVTLARKMEGTGGTKRVYAHLTITDTGCGIAPEYLEHKL  97
            R+++ NLL N+ K   K+G I VTL+   E T         LT+ D G GI PE L   +
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEGGELT---------LTVEDNGIGIPPEDLPR-I  56

Query  98   FQPFTQED-ILTEGVGLGLSIVDRLVTNAGGQIDVKSTVGIGTQFEVYIPVE  148
            F+PF+  D     G GLGLSIV +LV   GG I V+S  G GT   + +P+ 
Sbjct  57   FEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLA  108


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 79.9 bits (198),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 58/129 (45%), Gaps = 22/129 (17%)

Query  354  VLIVDDNDINLKILATFMRRIGCSYETATNGLVALEKYQQAQRQFNYVLMGRLPLLGVMV  413
            VLIVDD+ +  ++L   + + G     A +G  ALE  +  + + + +L+          
Sbjct  1    VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLK--EERPDLILL----------  48

Query  414  QLTAIDLSMPVMDGIISTSKIREYEEENSLPRAAIMAVTGVASATMQQQAFAAGIDDFLV  473
                 D++MP MDG+    +IR    + + P   ++ +T         +A  AG DDFL 
Sbjct  49   -----DINMPGMDGLELLKRIR--RRDPTTP---VIILTAHGDEDDAVEALEAGADDFLS  98

Query  474  KPLSLRDLK  482
            KP    +L 
Sbjct  99   KPFDPDELL  107



Lambda      K        H        a         alpha
   0.316    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00029315

Length=658


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 833256350


Query= TCONS_00029316

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00029317

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00029318

Length=1141
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  99.7    3e-25
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  81.8    5e-19
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  61.1    3e-12


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 99.7 bits (249),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 12/112 (11%)

Query  691  RRIVMNLLGNSFKFT-KSGFIEVTLARKMEGTGGTKRVYAHLTITDTGCGIAPEYLEHKL  749
            R+++ NLL N+ K   K+G I VTL+   E T         LT+ D G GI PE L   +
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEGGELT---------LTVEDNGIGIPPEDLPR-I  56

Query  750  FQPFTQED-ILTEGVGLGLSIVDRLVTNAGGQIDVKSTVGIGTQFEVYIPVE  800
            F+PF+  D     G GLGLSIV +LV   GG I V+S  G GT   + +P+ 
Sbjct  57   FEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLA  108


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 81.8 bits (203),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 58/129 (45%), Gaps = 22/129 (17%)

Query  1006  VLIVDDNDINLKILATFMRRIGCSYETATNGLVALEKYQQAQRQFNYVLMGRLPLLGVMV  1065
             VLIVDD+ +  ++L   + + G     A +G  ALE  +  + + + +L+          
Sbjct  1     VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLK--EERPDLILL----------  48

Query  1066  QLTAIDLSMPVMDGIISTSKIREYEEENSLPRAAIMAVTGVASATMQQQAFAAGIDDFLV  1125
                  D++MP MDG+    +IR    + + P   ++ +T         +A  AG DDFL 
Sbjct  49    -----DINMPGMDGLELLKRIR--RRDPTTP---VIILTAHGDEDDAVEALEAGADDFLS  98

Query  1126  KPLSLRDLK  1134
             KP    +L 
Sbjct  99    KPFDPDELL  107


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 61.1 bits (149),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 24/65 (37%), Positives = 37/65 (57%), Gaps = 0/65 (0%)

Query  532  SKSDLLSSVSHELRSPLHGMLASVELLRTTDLQPAQLDMLTMIETCGLTLMDTLNYLLDF  591
            +KS+ L+++SHELR+PL  +   +ELLR   L   Q + L  I      L+  +N LLD 
Sbjct  1    AKSEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQREYLETILRSAERLLRLINDLLDL  60

Query  592  TKINN  596
            ++I  
Sbjct  61   SRIEA  65



Lambda      K        H        a         alpha
   0.317    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1457672472


Query= TCONS_00029319

Length=1126
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  99.7    3e-25
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  92.2    1e-22
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  61.1    2e-12


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 99.7 bits (249),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 12/112 (11%)

Query  691  RRIVMNLLGNSFKFT-KSGFIEVTLARKMEGTGGTKRVYAHLTITDTGCGIAPEYLEHKL  749
            R+++ NLL N+ K   K+G I VTL+   E T         LT+ D G GI PE L   +
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEGGELT---------LTVEDNGIGIPPEDLPR-I  56

Query  750  FQPFTQED-ILTEGVGLGLSIVDRLVTNAGGQIDVKSTVGIGTQFEVYIPVE  800
            F+PF+  D     G GLGLSIV +LV   GG I V+S  G GT   + +P+ 
Sbjct  57   FEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLA  108


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 92.2 bits (230),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 34/114 (30%), Positives = 58/114 (51%), Gaps = 7/114 (6%)

Query  1006  VLIVDDNDINLKILATFMRRIGCSYETATNGLVALEKYQQAQRQFNYVLMDLSMPVMDGI  1065
             VLIVDD+ +  ++L   + + G     A +G  ALE  +  + + + +L+D++MP MDG+
Sbjct  1     VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLK--EERPDLILLDINMPGMDGL  58

Query  1066  ISTSKIREYEEENSLPRAAIMAVTGVASATMQQQAFAAGIDDFLVKPLSLRDLK  1119
                 +IR    + + P   ++ +T         +A  AG DDFL KP    +L 
Sbjct  59    ELLKRIR--RRDPTTP---VIILTAHGDEDDAVEALEAGADDFLSKPFDPDELL  107


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 61.1 bits (149),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/65 (37%), Positives = 37/65 (57%), Gaps = 0/65 (0%)

Query  532  SKSDLLSSVSHELRSPLHGMLASVELLRTTDLQPAQLDMLTMIETCGLTLMDTLNYLLDF  591
            +KS+ L+++SHELR+PL  +   +ELLR   L   Q + L  I      L+  +N LLD 
Sbjct  1    AKSEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQREYLETILRSAERLLRLINDLLDL  60

Query  592  TKINN  596
            ++I  
Sbjct  61   SRIEA  65



Lambda      K        H        a         alpha
   0.317    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1436728902


Query= TCONS_00034355

Length=946
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  99.4    3e-25
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  81.4    5e-19
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  61.1    2e-12


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 99.4 bits (248),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 12/112 (11%)

Query  496  RRIVMNLLGNSFKFT-KSGFIEVTLARKMEGTGGTKRVYAHLTITDTGCGIAPEYLEHKL  554
            R+++ NLL N+ K   K+G I VTL+   E T         LT+ D G GI PE L   +
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEGGELT---------LTVEDNGIGIPPEDLPR-I  56

Query  555  FQPFTQED-ILTEGVGLGLSIVDRLVTNAGGQIDVKSTVGIGTQFEVYIPVE  605
            F+PF+  D     G GLGLSIV +LV   GG I V+S  G GT   + +P+ 
Sbjct  57   FEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLA  108


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 81.4 bits (202),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 58/129 (45%), Gaps = 22/129 (17%)

Query  811  VLIVDDNDINLKILATFMRRIGCSYETATNGLVALEKYQQAQRQFNYVLMGRLPLLGVMV  870
            VLIVDD+ +  ++L   + + G     A +G  ALE  +  + + + +L+          
Sbjct  1    VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLK--EERPDLILL----------  48

Query  871  QLTAIDLSMPVMDGIISTSKIREYEEENSLPRAAIMAVTGVASATMQQQAFAAGIDDFLV  930
                 D++MP MDG+    +IR    + + P   ++ +T         +A  AG DDFL 
Sbjct  49   -----DINMPGMDGLELLKRIR--RRDPTTP---VIILTAHGDEDDAVEALEAGADDFLS  98

Query  931  KPLSLRDLK  939
            KP    +L 
Sbjct  99   KPFDPDELL  107


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 61.1 bits (149),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 24/65 (37%), Positives = 37/65 (57%), Gaps = 0/65 (0%)

Query  337  SKSDLLSSVSHELRSPLHGMLASVELLRTTDLQPAQLDMLTMIETCGLTLMDTLNYLLDF  396
            +KS+ L+++SHELR+PL  +   +ELLR   L   Q + L  I      L+  +N LLD 
Sbjct  1    AKSEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQREYLETILRSAERLLRLINDLLDL  60

Query  397  TKINN  401
            ++I  
Sbjct  61   SRIEA  65



Lambda      K        H        a         alpha
   0.317    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1203494600


Query= TCONS_00034356

Length=561


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00034357

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  94.0    8e-25


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 94.0 bits (234),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 12/112 (11%)

Query  39   RRIVMNLLGNSFKFT-KSGFIEVTLARKMEGTGGTKRVYAHLTITDTGCGIAPEYLEHKL  97
            R+++ NLL N+ K   K+G I VTL+   E T         LT+ D G GI PE L   +
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEGGELT---------LTVEDNGIGIPPEDLPR-I  56

Query  98   FQPFTQED-ILTEGVGLGLSIVDRLVTNAGGQIDVKSTVGIGTQFEVYIPVE  148
            F+PF+  D     G GLGLSIV +LV   GG I V+S  G GT   + +P+ 
Sbjct  57   FEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLA  108



Lambda      K        H        a         alpha
   0.314    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00034358

Length=1099
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  99.7    2e-25
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  91.8    1e-22
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  60.7    3e-12


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 99.7 bits (249),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 12/112 (11%)

Query  664  RRIVMNLLGNSFKFT-KSGFIEVTLARKMEGTGGTKRVYAHLTITDTGCGIAPEYLEHKL  722
            R+++ NLL N+ K   K+G I VTL+   E T         LT+ D G GI PE L   +
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEGGELT---------LTVEDNGIGIPPEDLPR-I  56

Query  723  FQPFTQED-ILTEGVGLGLSIVDRLVTNAGGQIDVKSTVGIGTQFEVYIPVE  773
            F+PF+  D     G GLGLSIV +LV   GG I V+S  G GT   + +P+ 
Sbjct  57   FEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLA  108


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 91.8 bits (229),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 34/114 (30%), Positives = 58/114 (51%), Gaps = 7/114 (6%)

Query  979   VLIVDDNDINLKILATFMRRIGCSYETATNGLVALEKYQQAQRQFNYVLMDLSMPVMDGI  1038
             VLIVDD+ +  ++L   + + G     A +G  ALE  +  + + + +L+D++MP MDG+
Sbjct  1     VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLK--EERPDLILLDINMPGMDGL  58

Query  1039  ISTSKIREYEEENSLPRAAIMAVTGVASATMQQQAFAAGIDDFLVKPLSLRDLK  1092
                 +IR    + + P   ++ +T         +A  AG DDFL KP    +L 
Sbjct  59    ELLKRIR--RRDPTTP---VIILTAHGDEDDAVEALEAGADDFLSKPFDPDELL  107


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 60.7 bits (148),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 24/65 (37%), Positives = 37/65 (57%), Gaps = 0/65 (0%)

Query  505  SKSDLLSSVSHELRSPLHGMLASVELLRTTDLQPAQLDMLTMIETCGLTLMDTLNYLLDF  564
            +KS+ L+++SHELR+PL  +   +ELLR   L   Q + L  I      L+  +N LLD 
Sbjct  1    AKSEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQREYLETILRSAERLLRLINDLLDL  60

Query  565  TKINN  569
            ++I  
Sbjct  61   SRIEA  65



Lambda      K        H        a         alpha
   0.316    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1399030476


Query= TCONS_00034359

Length=1114
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  99.4    3e-25
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  81.4    6e-19
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  60.7    3e-12


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 99.4 bits (248),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 12/112 (11%)

Query  664  RRIVMNLLGNSFKFT-KSGFIEVTLARKMEGTGGTKRVYAHLTITDTGCGIAPEYLEHKL  722
            R+++ NLL N+ K   K+G I VTL+   E T         LT+ D G GI PE L   +
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEGGELT---------LTVEDNGIGIPPEDLPR-I  56

Query  723  FQPFTQED-ILTEGVGLGLSIVDRLVTNAGGQIDVKSTVGIGTQFEVYIPVE  773
            F+PF+  D     G GLGLSIV +LV   GG I V+S  G GT   + +P+ 
Sbjct  57   FEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLA  108


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 81.4 bits (202),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 58/129 (45%), Gaps = 22/129 (17%)

Query  979   VLIVDDNDINLKILATFMRRIGCSYETATNGLVALEKYQQAQRQFNYVLMGRLPLLGVMV  1038
             VLIVDD+ +  ++L   + + G     A +G  ALE  +  + + + +L+          
Sbjct  1     VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLK--EERPDLILL----------  48

Query  1039  QLTAIDLSMPVMDGIISTSKIREYEEENSLPRAAIMAVTGVASATMQQQAFAAGIDDFLV  1098
                  D++MP MDG+    +IR    + + P   ++ +T         +A  AG DDFL 
Sbjct  49    -----DINMPGMDGLELLKRIR--RRDPTTP---VIILTAHGDEDDAVEALEAGADDFLS  98

Query  1099  KPLSLRDLK  1107
             KP    +L 
Sbjct  99    KPFDPDELL  107


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 60.7 bits (148),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 24/65 (37%), Positives = 37/65 (57%), Gaps = 0/65 (0%)

Query  505  SKSDLLSSVSHELRSPLHGMLASVELLRTTDLQPAQLDMLTMIETCGLTLMDTLNYLLDF  564
            +KS+ L+++SHELR+PL  +   +ELLR   L   Q + L  I      L+  +N LLD 
Sbjct  1    AKSEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQREYLETILRSAERLLRLINDLLDL  60

Query  565  TKINN  569
            ++I  
Sbjct  61   SRIEA  65



Lambda      K        H        a         alpha
   0.317    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1419974046


Query= TCONS_00029320

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  95.9    2e-24
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  90.3    2e-22


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 95.9 bits (239),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 61/112 (54%), Gaps = 12/112 (11%)

Query  39   RRIVMNLLGNSFKFT-KSGFIEVTLARKMEGTGGTKRVYAHLTITDTGCGIAPEYLEHKL  97
            R+++ NLL N+ K   K+G I VTL+   E T         LT+ D G GI PE L   +
Sbjct  7    RQVLSNLLDNALKHAAKAGEITVTLSEGGELT---------LTVEDNGIGIPPEDLPR-I  56

Query  98   FQPFTQED-ILTEGVGLGLSIVDRLVTNAGGQIDVKSTVGIGTQFEVYIPVE  148
            F+PF+  D     G GLGLSIV +LV   GG I V+S  G GT   + +P+ 
Sbjct  57   FEPFSTADKRGGGGTGLGLSIVRKLVELLGGTITVESEPGGGTTVTLTLPLA  108


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 90.3 bits (225),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 34/114 (30%), Positives = 58/114 (51%), Gaps = 7/114 (6%)

Query  354  VLIVDDNDINLKILATFMRRIGCSYETATNGLVALEKYQQAQRQFNYVLMDLSMPVMDGI  413
            VLIVDD+ +  ++L   + + G     A +G  ALE  +  + + + +L+D++MP MDG+
Sbjct  1    VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLK--EERPDLILLDINMPGMDGL  58

Query  414  ISTSKIREYEEENSLPRAAIMAVTGVASATMQQQAFAAGIDDFLVKPLSLRDLK  467
                +IR    + + P   ++ +T         +A  AG DDFL KP    +L 
Sbjct  59   ELLKRIR--RRDPTTP---VIILTAHGDEDDAVEALEAGADDFLSKPFDPDELL  107



Lambda      K        H        a         alpha
   0.316    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00034360

Length=104
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  65.6    6e-16


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 65.6 bits (161),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 7/93 (8%)

Query  5    GCSYETATNGLVALEKYQQAQRQFNYVLMDLSMPVMDGIISTSKIREYEEENSLPRAAIM  64
            G     A +G  ALE  ++   + + +L+D++MP MDG+    +IR    + + P   ++
Sbjct  22   GYVVAEADDGKEALELLKE--ERPDLILLDINMPGMDGLELLKRIRR--RDPTTP---VI  74

Query  65   AVTGVASATMQQQAFAAGIDDFLVKPLSLRDLK  97
             +T         +A  AG DDFL KP    +L 
Sbjct  75   ILTAHGDEDDAVEALEAGADDFLSKPFDPDELL  107



Lambda      K        H        a         alpha
   0.321    0.131    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00029321

Length=1349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           179     1e-51
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  119     1e-32
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  104     2e-26


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 179 bits (455),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 68/205 (33%), Positives = 111/205 (54%), Gaps = 2/205 (1%)

Query  394  CTIRQFQIMAGDRLSLIIKVVSAILQALVCGSLFYNLKDDSSSIFLRPGALFFPVLYFLL  453
               R+F     D    + +++  IL AL+ G+LF NL +       RPG LFF +L+   
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGN-QQGGLNRPGLLFFSILFNAF  59

Query  454  ESMSETTASF-MGRPILSRQKRFGFYRPTAFCIANAITDIPVVLVQVSCFCIILYFMAAL  512
             ++S  +  F   R +L R+     Y P+A+ +A  ++++P+ L+Q   F +I+YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  513  QMDAGRFFTYWIIVIANTLCFMQMFRAVGALCKRFGNASKITGLLSTIFFVYGGYLIPYE  572
               AGRFF + ++++   L    +   + AL   F +AS++  L+     +  G+ IP +
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  573  KMHVWFRWIFYLNPGAYAFEALMAN  597
             M VW++WI+YLNP  YA EAL AN
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


 Score = 147 bits (373),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 55/206 (27%), Positives = 98/206 (48%), Gaps = 3/206 (1%)

Query  1037  VTKRLMVQLWRSPDYVWNKVILHVFAALFSGFTFWKIGDGAFDLQLRLFAIFNFIFVAPG  1096
             + KR  ++ WR P     ++I  +  AL  G  F  +G+    L       F+ +F A  
Sbjct  1     LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNRPGLLFFSILFNAFS  60

Query  1097  CINQMQPFFLHNRDIFEAREKKSKIYHWLAFIGAQTVSEIPYLILCATLYFACWYFTAGF  1156
              ++ + P F   R +   RE  S +Y   A++ A+ +SE+P  +L + ++    YF  G 
Sbjct  61    ALSGISPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  1157  PTTASISGHMYLQMIFYEFLYTSIGQGIAAYAPNEYFAAVMNPVLIGAGLVSFCGVVVPF  1216
             P +A       L ++      +S+G  I+A AP+   A+ + P+++   L+   G  +P 
Sbjct  120   PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLP-LLLLSGFFIPI  178

Query  1217  SQMQPFWRDWLYYLDPFTYLVGGLLG  1242
               M  +W+ W+YYL+P TY +  L  
Sbjct  179   DSMPVWWQ-WIYYLNPLTYAIEALRA  203


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 119 bits (302),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 30/89 (34%), Positives = 50/89 (56%), Gaps = 3/89 (3%)

Query  612  IPYGSGYPGSESPYRGCSIPGSE-G-DVILGAAYIRAQYNYSWHHIWRSFGVIIGFWVFF  669
            +P G GY       + C++ G+  G   + G  Y+ A Y YS+ H+WR+FG++I FW+FF
Sbjct  1    VPSGPGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFF  60

Query  670  IVLTALGLELLNS-QGGSSVLLYKRGSQK  697
            + L  +  E  ++ +    VL++KRG   
Sbjct  61   LALYLIATEYNSAAKSKGEVLVFKRGKAP  89


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 104 bits (262),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 54/151 (36%), Positives = 83/151 (55%), Gaps = 15/151 (10%)

Query  747  VKPGNLVALMGCSGAGKTTLLDVLAQRKDSGEIY---GSILIDGRP----QGISFQRTTG  799
            + PG ++AL+G +GAGK+TLL ++     +G +    G+IL+DG+     +  S ++  G
Sbjct  8    LNPGEILALVGPNGAGKSTLLKLI-----AGLLSPTEGTILLDGQDLTDDERKSLRKEIG  62

Query  800  YCEQMDVHEPTATVREALVFSALLRQPAHVPREEKLAYVDHIIDLLELRDISDALIGVPG  859
            Y  Q     P  TVRE L    LL+    + + EK A  +  ++ L L D++D  +G   
Sbjct  63   YVFQDPQLFPRLTVRENLRLGLLLK---GLSKREKDARAEEALEKLGLGDLADRPVGERP  119

Query  860  AGLSIEQRKRVTLGVELVAKPTLLFLDEPTS  890
              LS  QR+RV +   L+ KP LL LDEPT+
Sbjct  120  GTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 101 bits (255),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 75/161 (47%), Gaps = 14/161 (9%)

Query  67   LKDVSGQVKPGEMLLVLGRPGSGCTSLLRVLSNDRESFDEVIGETRY--GSMDHVAARRF  124
            LK+VS  + PGE+L ++G  G+G ++LL++++    S  E  G        +     +  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAG-LLSPTE--GTILLDGQDLTDDERKSL  57

Query  125  RQQIMFNNEDDVHFPTLTVNRTMKFALRNKVPRERPDGQGSKEFVQEQRDNILSALGIRH  184
            R++I +  +D   FP LTV   ++  L  K   +R            + +  L  LG+  
Sbjct  58   RKEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREK--------DARAEEALEKLGLGD  109

Query  185  TTKTLVGNEFIRGVSGGERKRVSLAEVIAGQSPIQVWDNPT  225
                 VG      +SGG+R+RV++A  +  +  + + D PT
Sbjct  110  LADRPVGE-RPGTLSGGQRQRVAIARALLTKPKLLLLDEPT  149



Lambda      K        H        a         alpha
   0.324    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1722126600


Query= TCONS_00029322

Length=178
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           88.5    7e-23


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 88.5 bits (220),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 48/166 (29%), Positives = 85/166 (51%), Gaps = 2/166 (1%)

Query  1    MAGDRLSLIIKVVSAILQALVCGSLFYNLKDDSSSIFLRPGALFFPVLYFLLESMSETTA  60
               D    + +++  IL AL+ G+LF NL +       RPG LFF +L+    ++S  + 
Sbjct  9    RWRDPSLGLWRLIQPILMALIFGTLFGNLGN-QQGGLNRPGLLFFSILFNAFSALSGISP  67

Query  61   SF-MGRPILSRQKRFGFYRPTAFCIANAITDIPVVLVQVSCFCIILYFMAALQMDAGRFF  119
             F   R +L R+     Y P+A+ +A  ++++P+ L+Q   F +I+YFM  L   AGRFF
Sbjct  68   VFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGLPPSAGRFF  127

Query  120  TYWIIVIANTLCFMQMFRAVGALCKRFGNASKITGLLSTIFFVYGG  165
             + ++++   L    +   + AL   F +AS++  L+     +  G
Sbjct  128  LFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSG  173



Lambda      K        H        a         alpha
   0.335    0.144    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00029323

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.148    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00029324

Length=268


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00029325

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460400 pfam01975, SurE, Survival protein SurE. E. coli cells ...  122     7e-35


>CDD:460400 pfam01975, SurE, Survival protein SurE.  E. coli cells with the 
surE gene disrupted are found to survive poorly in stationary 
phase. It is suggested that SurE may be involved in stress 
response. Yeast also contains a member of the family. Yarrowia 
lipolytica PHO2 can complement a mutation in acid phosphatase, 
suggesting that members of this family could be phosphatases.
Length=187

 Score = 122 bits (310),  Expect = 7e-35, Method: Composition-based stats.
 Identities = 67/196 (34%), Positives = 89/196 (45%), Gaps = 30/196 (15%)

Query  21   SNDDGWAEINIRQFYKALTAAGHSVVVSAPAENQSGKGSSDKTPTTRTKPCEFNSCPSGS  80
            +NDDG     IR   +AL AA H V V AP   +SG G S     T  +P          
Sbjct  4    TNDDGIDAPGIRALVEAL-AAAHDVTVVAPDSERSGVGHS----ITLHEPLRATEVVEID  58

Query  81   PATGFNASDPRLNYVNSYPVTSMKYGISTAAPPFFNDAPPALAVSGPNVGSNLGLAVYFS  140
             A  +         V+  P   +K  +S           P L VSG N G+NLG  V +S
Sbjct  59   GAEAY--------AVSGTPADCVKLALSG-----LLLRKPDLVVSGINHGANLGTDVLYS  105

Query  141  GTVGAAHYAAEAGIPAIAFSGSSGSPTA-WNAAVPAYSRVYAQLATKITNQIVASGTPYL  199
            GTVGAA  AA  GIP+IA S +S S    + AA        A+ A ++  +++ +    L
Sbjct  106  GTVGAAMEAALLGIPSIAVSLASFSDDEDFEAA--------ARFAARLVEKLIEAL---L  154

Query  200  PDQVWLNVNFPEVSSE  215
            P    LNVN P+V +E
Sbjct  155  PGGDLLNVNVPDVPAE  170



Lambda      K        H        a         alpha
   0.315    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00029327

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00029326

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00029328

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00029329

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432732 pfam12706, Lactamase_B_2, Beta-lactamase superfamily d...  69.6    7e-15


>CDD:432732 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain. 
 This family is part of the beta-lactamase superfamily and is 
related to pfam00753.
Length=196

 Score = 69.6 bits (171),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 44/197 (22%)

Query  70   PALQLHDLPPIDAVLLSHE--DHLDNLD--PEGRKLLDGRRVFTTMDGASNLRPRPG---  122
            P     D  PIDAVLL+H+  DHL  L    EGR     R ++  +   ++LR       
Sbjct  21   PGRLRDD--PIDAVLLTHDHYDHLAGLLDLREGR----PRPLYAPLGVLAHLRRNFPYLF  74

Query  123  --------VVGLRPWQTVTATIGGKVFRITGTPCKHF-------PVGEVTGFILETDSFG  167
                    V  +   ++ T  +G     +T TP +H          G+  GF +E     
Sbjct  75   LLEHYGVRVHEIDWGESFT--VGDGGLTVTATPARHGSPRGLDPNPGDTLGFRIEGPGK-  131

Query  168  VDATGKPNAIYFSGDTVYIDELREIGKKWH-ISAAILNLGNATFDFPTGPIQITMDGKQA  226
                     +Y++GDT Y  +  EIG++       +L+ G    D       +T +  +A
Sbjct  132  --------RVYYAGDTGYFPD--EIGERLGGADLLLLDGGAWRDDEMIHMGHMTPE--EA  179

Query  227  VQLTRDIGADVMIPIHF  243
            V+   D+GA   + IH 
Sbjct  180  VEAAADLGARRKVLIHI  196



Lambda      K        H        a         alpha
   0.320    0.140    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00034361

Length=221


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00029330

Length=384


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00029331

Length=336


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00029332

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00029333

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00034362

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00029334

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00034363

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00034364

Length=25


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82528100


Query= TCONS_00029335

Length=239


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00029336

Length=239


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00029337

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396343 pfam01738, DLH, Dienelactone hydrolase family              94.7    2e-24


>CDD:396343 pfam01738, DLH, Dienelactone hydrolase family.  
Length=213

 Score = 94.7 bits (236),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 86/202 (43%), Gaps = 9/202 (4%)

Query  29   GVLILTDVIGHRFINSQLIADQFAANGYIVAMPDLFHGDSVKLNRPETFNLMSWL-EGHP  87
             V++  ++ G    N + IAD+ A  GY+   PDL+       +  +    M  L     
Sbjct  14   VVVVFQEIFGVN-DNIREIADRLADEGYVALAPDLYFRQGDPNDEADAARAMFELVSKRV  72

Query  88   IERVDPVVDSVLKYMRTR--LGCEKIGAVGYCFGAKYVVRFLRPEEGKVDVGYIAHPGFV  145
            +E+V   +++ + Y++++  +  +K+G VGYC G    V  L  +   VD     +    
Sbjct  73   MEKVLDDLEAAVNYLKSQPEVSPKKVGVVGYCMGGALAV-LLAAKGPLVDAAVGFYGVGP  131

Query  146  ELDELSA--ITGPLSIAAAETDDVFPTSKRHQSEGILRDSGLPYQINLYGRVEHGFAIRA  203
            E   + A  I  P+     E D   P   R   E  L+ + + +QI+ Y    H FA   
Sbjct  132  EPPLIEAPDIKAPILFHFGEEDHFVPADSRELIEEALKAANVDHQIHSYPGAGHAFA--N  189

Query  204  DLTDKAKKFAKEQAFLQAVQWF  225
            D        A E A+ + +++F
Sbjct  190  DSRPSYNAAAAEDAWERTLEFF  211



Lambda      K        H        a         alpha
   0.321    0.139    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00029339

Length=556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            114     2e-28


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 114 bits (287),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 83/385 (22%), Positives = 144/385 (37%), Gaps = 46/385 (12%)

Query  129  MLVVCVAYGSAFVTGGL--GLIEDKYHVSLEVATLTVSIMVCGFAVGPLLWSPLSEIIGR  186
             L   +A     + G     L+ +   +S     L +++   G+A+   L   LS+  GR
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  187  RPVYVISLGLYTIFQIPCALSPNIGGLLACRFLSGVFSSSGLSLAGGTIADVWNIEERGM  246
            R V +I L L+ +  +    + ++  LL  R L G+ + +    A   IAD +  EERG 
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  247  AIAFFAAAPYCGPVVGPIVCGWINVGSHRLDLFFWTNMAFAGVVMIVVGLVPETYAPVIL  306
            A+   +A    G  +GP++ G +          F      + +  +++ L          
Sbjct  122  ALGLVSAGFGLGAALGPLLGGLL-ASLFGWRAAFLILAILSLLAAVLLLLPRP-------  173

Query  307  KRRAKKLRQETGNPNIITEQEKVKLSFREIVRTNLVRPITMILTEPVLDLMCMYIVLIYA  366
                                E  +    E  R +L+     +L +PVL L+   ++L   
Sbjct  174  ------------------PPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLA-LLLFGF  214

Query  367  MLYGFFFAFPVIFGELYGYNDGQIGLMF-IPILIGAGFALLVTPLMEKQFRRICQSRAPT  425
              +G     P+ + E+ G +    GL+  +  L+GA   LL+  L ++  RR        
Sbjct  215  AFFGLLTYLPL-YQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRR-------  266

Query  426  PEDRLIAALLGAPFIPIAMFILGATSFKHIIWVGPASSGIAFGFGMVLCYYAVNNYIIDS  485
               RL+ ALL      + + +L  T     + +     G  FG        A+N  + D 
Sbjct  267  ---RLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFP----ALNALVSDL  319

Query  486  YHK-YAASALAAKVFLRSGGGAAFP  509
              K    +A        S GGA  P
Sbjct  320  APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.142    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 693414592


Query= TCONS_00029338

Length=556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            114     2e-28


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 114 bits (287),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 83/385 (22%), Positives = 144/385 (37%), Gaps = 46/385 (12%)

Query  129  MLVVCVAYGSAFVTGGL--GLIEDKYHVSLEVATLTVSIMVCGFAVGPLLWSPLSEIIGR  186
             L   +A     + G     L+ +   +S     L +++   G+A+   L   LS+  GR
Sbjct  2    FLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  187  RPVYVISLGLYTIFQIPCALSPNIGGLLACRFLSGVFSSSGLSLAGGTIADVWNIEERGM  246
            R V +I L L+ +  +    + ++  LL  R L G+ + +    A   IAD +  EERG 
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  247  AIAFFAAAPYCGPVVGPIVCGWINVGSHRLDLFFWTNMAFAGVVMIVVGLVPETYAPVIL  306
            A+   +A    G  +GP++ G +          F      + +  +++ L          
Sbjct  122  ALGLVSAGFGLGAALGPLLGGLL-ASLFGWRAAFLILAILSLLAAVLLLLPRP-------  173

Query  307  KRRAKKLRQETGNPNIITEQEKVKLSFREIVRTNLVRPITMILTEPVLDLMCMYIVLIYA  366
                                E  +    E  R +L+     +L +PVL L+   ++L   
Sbjct  174  ------------------PPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLA-LLLFGF  214

Query  367  MLYGFFFAFPVIFGELYGYNDGQIGLMF-IPILIGAGFALLVTPLMEKQFRRICQSRAPT  425
              +G     P+ + E+ G +    GL+  +  L+GA   LL+  L ++  RR        
Sbjct  215  AFFGLLTYLPL-YQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRR-------  266

Query  426  PEDRLIAALLGAPFIPIAMFILGATSFKHIIWVGPASSGIAFGFGMVLCYYAVNNYIIDS  485
               RL+ ALL      + + +L  T     + +     G  FG        A+N  + D 
Sbjct  267  ---RLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFP----ALNALVSDL  319

Query  486  YHK-YAASALAAKVFLRSGGGAAFP  509
              K    +A        S GGA  P
Sbjct  320  APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.326    0.142    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 693414592


Query= TCONS_00034366

Length=432


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00034365

Length=506


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00029340

Length=634


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 797861390


Query= TCONS_00034367

Length=432


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00034368

Length=377


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 447362496


Query= TCONS_00029341

Length=459


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00034369

Length=432


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00029342

Length=416


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 507942834


Query= TCONS_00029343

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00029344

Length=432


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0752    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00029345

Length=432


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00029347

Length=336


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00029346

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00034370

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00029348

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432471 pfam12311, DUF3632, Protein of unknown function (DUF36...  134     2e-39


>CDD:432471 pfam12311, DUF3632, Protein of unknown function (DUF3632).  This 
domain family is found in eukaryotes, and is approximately 
170 amino acids in length. There is a conserved ALE sequence 
motif.
Length=183

 Score = 134 bits (339),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 81/208 (39%), Gaps = 37/208 (18%)

Query  65   AVMELAQRREPAEHTKLAKFVSHLQKQIAIDPSTNEPLTVQRDILWTDMPSFGYTELETW  124
             ++E A ++ PA   +L   +  L++            T   D LW+D+P  G    E+W
Sbjct  3    LIIEAA-KQIPAAQDRLVDLLLALRELP--PLEVWGAKTEDGDRLWSDLPFLGADLRESW  59

Query  125  SEFGGDYKDPCDITLASEQRDRWTKLNAFLAQLTQAADIHYPPPGEEVRFFPLDKSLRAI  184
            +               S +   W  LNAFLA+LT A  +              D SL A+
Sbjct  60   TA-----------DSRSMEAAEWINLNAFLARLTAAGVLD-------------DWSLYAL  95

Query  185  WVMAMAFE------NERPPSSLGDTAAMEAACLWFIYAAKRLWANVVNNRTYPAVAGAG-  237
            W +  A E       ER  S     A + AA  W IYA +RL+   V         G G 
Sbjct  96   WALRDALEEPDEEDEERASSEETLDALLPAAAQWIIYAGERLYELCVRGGAKDPKDGEGR  155

Query  238  ---PGKRYEAAGWTGYTRERWGIWEDAL  262
                G  Y   GW G++ ERW  W++  
Sbjct  156  GGRGGPLYGGKGWKGFSPERWAFWKERF  183



Lambda      K        H        a         alpha
   0.318    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00029349

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              83.5    5e-19


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 83.5 bits (207),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 111/227 (49%), Gaps = 9/227 (4%)

Query  1    MSEEVKDAGRYVPIAIAWGYFSNGVMAIVVVISFLFAIPSVEDALDDATGFPFIYVFKNA  60
            +SEEVK   R VP AI  G    GV+ I+V I+F   +P  E AL    G     +F+  
Sbjct  210  VSEEVKK--RNVPKAIFIGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAV  267

Query  61   TSVAGVNGLTAIILIPVIFSNILFNASTSRQTFAFARDKGLPFARWIAKVDPRRKIPVNA  120
                G   +  ++ + ++ +        SR  +A ARD  LPF+R+ AKV+     P+ A
Sbjct  268  GGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNK-FGSPIRA  326

Query  121  IALSCIISCLLSLINIGSLTAFNAIISLNVAALMYTYIISISCIIYRKIWHPDTLPPRRW  180
            I L+ I+S +L L+ + S  A+NA++SL+    + +Y++ I  +    +      P    
Sbjct  327  IILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGL----LILRKKRPDLGR  382

Query  181  DLGRWGLTVNIVGLLYCMFALFWALWPSETPVTVDNFNWSVVIFGVV  227
              GRW   V I G+L+ +F +    +P   P T  + N+++++    
Sbjct  383  IPGRW--PVAIFGILFSLFLIVALFFPPVGPATGSSLNYAIILIVAF  427



Lambda      K        H        a         alpha
   0.329    0.142    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00034371

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00034372

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00029350

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              83.5    5e-19


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 83.5 bits (207),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 111/227 (49%), Gaps = 9/227 (4%)

Query  1    MSEEVKDAGRYVPIAIAWGYFSNGVMAIVVVISFLFAIPSVEDALDDATGFPFIYVFKNA  60
            +SEEVK   R VP AI  G    GV+ I+V I+F   +P  E AL    G     +F+  
Sbjct  210  VSEEVKK--RNVPKAIFIGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAV  267

Query  61   TSVAGVNGLTAIILIPVIFSNILFNASTSRQTFAFARDKGLPFARWIAKVDPRRKIPVNA  120
                G   +  ++ + ++ +        SR  +A ARD  LPF+R+ AKV+     P+ A
Sbjct  268  GGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNK-FGSPIRA  326

Query  121  IALSCIISCLLSLINIGSLTAFNAIISLNVAALMYTYIISISCIIYRKIWHPDTLPPRRW  180
            I L+ I+S +L L+ + S  A+NA++SL+    + +Y++ I  +    +      P    
Sbjct  327  IILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGL----LILRKKRPDLGR  382

Query  181  DLGRWGLTVNIVGLLYCMFALFWALWPSETPVTVDNFNWSVVIFGVV  227
              GRW   V I G+L+ +F +    +P   P T  + N+++++    
Sbjct  383  IPGRW--PVAIFGILFSLFLIVALFFPPVGPATGSSLNYAIILIVAF  427



Lambda      K        H        a         alpha
   0.329    0.142    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00034373

Length=366


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00034374

Length=360


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00029352

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00029351

Length=228


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00029353

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.143    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00029355

Length=226


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00029354

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00034375

Length=366


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00034376

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00034377

Length=237


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00029357

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462583 pfam08740, BCS1_N, BCS1 N terminal. This domain is fou...  180     6e-55
CDD:459627 pfam00004, AAA, ATPase family associated with various ...  81.1    5e-19


>CDD:462583 pfam08740, BCS1_N, BCS1 N terminal.  This domain is found at 
the N terminal of the mitochondrial ATPase BSC1. It encodes 
the import and intramitochondrial sorting for the protein.
Length=178

 Score = 180 bits (459),  Expect = 6e-55, Method: Composition-based stats.
 Identities = 69/204 (34%), Positives = 103/204 (50%), Gaps = 28/204 (14%)

Query  21   LAVGSWVAKRLLDEYADLPLHLLCSSIEVHSYDEAYNYLLYWLMKQKLDANKNRLLALTS  80
            L       +R L     L      S++E+ S DE+Y+++L WL +Q        L A T 
Sbjct  1    LGALLAALRRGLRSLWSLLRRRFLSTVEIRSDDESYDWVLAWLSQQPFWRRSRSLSAETR  60

Query  81   LTSGQGGFFGEDTNKDNDAAEEDELEVHADAEYKASLANTRPLLWTPSAGTHWFRYRGRF  140
              S                         +D +     +  +PL +TP  GTH+F Y+GR+
Sbjct  61   TNS------------------------RSDDDDDDDGSKKKPLRYTPGFGTHYFWYKGRW  96

Query  141  LALTREVEENRQTVYTRT--EKLRVSCLGWDPAILKELMQDARVAFSQKEKGRTVIYRAM  198
             A++RE E +   + T +  E L +SCLG  P  LKEL+++AR  + +K++G+TVIYRA 
Sbjct  97   FAVSRERESSSSDLATGSPRETLTLSCLGRSPEPLKELLEEARELYLKKDEGKTVIYRAW  156

Query  199  KSIYDGELAWKRLTSRPARPLSTV  222
            +  Y G   W+R+ SRP RPLSTV
Sbjct  157  RDGYGGS--WRRVGSRPKRPLSTV  178


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 81.1 bits (201),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 67/137 (49%), Gaps = 15/137 (11%)

Query  259  YLFYGPPGTGKSSLAFAAAGFLGLNVYMVNLNS-----QQLTEDALTQLFLTL--PRRCL  311
             L YGPPGTGK++LA A A  LG     ++ +         +E  L +LF        C+
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  312  VLLEDIDANEVTGRRKPAARRRKGKNGISLSALLNIIDGVAAQEGRV-LIMTTNHHEHLD  370
            + +++IDA  + G R         +    ++ LL  +DG  +   +V +I  TN  + LD
Sbjct  61   IFIDEIDA--LAGSRGSGGDSESRR---VVNQLLTELDGFTSSNSKVIVIAATNRPDKLD  115

Query  371  PALIRPGRVDYKLEFQL  387
            PAL+  GR D  +EF L
Sbjct  116  PALL--GRFDRIIEFPL  130



Lambda      K        H        a         alpha
   0.316    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 649534314


Query= TCONS_00029358

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463266 pfam11374, DUF3176, Protein of unknown function (DUF31...  142     1e-44


>CDD:463266 pfam11374, DUF3176, Protein of unknown function (DUF3176).  This 
eukaryotic family of proteins has no known function.
Length=107

 Score = 142 bits (360),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 55/107 (51%), Positives = 65/107 (61%), Gaps = 2/107 (2%)

Query  63   IIFWYMDNKPLSAWRGPISLNATISILTTACTAMLMHGVSTFIGQSKWLHFKNRPRKLAD  122
             I    D KPL  W   ISLNA +SIL+T   A L+  VS  + Q KWL F  RPR L+D
Sbjct  2    AILLVYDGKPLPDWPYGISLNALLSILSTIARAALLFAVSEGLSQLKWLWFSRRPRPLSD  61

Query  123  LETFDGASRGVWGSILLLTTIKWNLATIGAFITILRLAFSPFTQQVV  169
            L  FD ASRG WGS+ LL    +  A++GA +TIL LA  PFTQQ V
Sbjct  62   LHRFDEASRGPWGSLKLLFR--FRGASLGALLTILALAIGPFTQQAV  106



Lambda      K        H        a         alpha
   0.322    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00034378

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463266 pfam11374, DUF3176, Protein of unknown function (DUF31...  151     1e-44


>CDD:463266 pfam11374, DUF3176, Protein of unknown function (DUF3176).  This 
eukaryotic family of proteins has no known function.
Length=107

 Score = 151 bits (385),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 55/107 (51%), Positives = 65/107 (61%), Gaps = 2/107 (2%)

Query  63   IIFWYMDNKPLSAWRGPISLNATISILTTACTAMLMHGVSTFIGQSKWLHFKNRPRKLAD  122
             I    D KPL  W   ISLNA +SIL+T   A L+  VS  + Q KWL F  RPR L+D
Sbjct  2    AILLVYDGKPLPDWPYGISLNALLSILSTIARAALLFAVSEGLSQLKWLWFSRRPRPLSD  61

Query  123  LETFDGASRGVWGSILLLTTIKWNLATIGAFITILRLAFSPFTQQVV  169
            L  FD ASRG WGS+ LL    +  A++GA +TIL LA  PFTQQ V
Sbjct  62   LHRFDEASRGPWGSLKLLFR--FRGASLGALLTILALAIGPFTQQAV  106



Lambda      K        H        a         alpha
   0.320    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00029360

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00029361

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00034379

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00029362

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00029363

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00029364

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429415 pfam07335, Glyco_hydro_75, Fungal chitosanase of glyco...  285     1e-99


>CDD:429415 pfam07335, Glyco_hydro_75, Fungal chitosanase of glycosyl hydrolase 
group 75.  This family consists of several fungal chitosanase 
proteins. Chitin, xylan, 6-O-sulphated chitosan and 
O-carboxymethyl chitin are indigestible by chitosanase. EC:3.2.1.132. 
The mechanism is likely to be inverting, and the 
probable catalytic neutrophile base is Asp, with the probable 
catalytic proton donor being Glu. (see the Chitosanase web-page 
from CAZY).
Length=166

 Score = 285 bits (731),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 106/165 (64%), Positives = 124/165 (75%), Gaps = 5/165 (3%)

Query  75   MDIDCDGANNSAGKCANDPSGQGETAFKSDVKKFGISDLDANIHPYVVFGNEDHSPKFKP  134
            MDIDCDGA    G+C   P GQ +T+FK  VK +GISDLDANIHPYVVFGNE   P F P
Sbjct  1    MDIDCDGAQGGPGRCGGSPDGQPQTSFKDTVKGYGISDLDANIHPYVVFGNEGKWPTFDP  60

Query  135  QSHGMQPLSVMAVVCNGQLHYGIWGDTNGG----VSTGEASISLADLCFPNEHLDGNHGH  190
            Q++G++PLSVMAVVCN +L YGIWGDTNG       TGEASISLA  CF N+ L+GN+GH
Sbjct  61   QAYGVEPLSVMAVVCNNKLFYGIWGDTNGDDGPKPMTGEASISLATACFGNDGLNGNNGH  120

Query  191  DPNDVLFIGFTSKDAVPGA-TAKWKAKNAKEFEDSIKSIGDKLVA  234
            D  DVL+I FT  DAVPGA  A WKAK+  +FE SIK++GD+LVA
Sbjct  121  DEKDVLYIAFTGSDAVPGADGANWKAKSFTDFESSIKALGDRLVA  165



Lambda      K        H        a         alpha
   0.314    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00029365

Length=173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429415 pfam07335, Glyco_hydro_75, Fungal chitosanase of glyco...  153     1e-48


>CDD:429415 pfam07335, Glyco_hydro_75, Fungal chitosanase of glycosyl hydrolase 
group 75.  This family consists of several fungal chitosanase 
proteins. Chitin, xylan, 6-O-sulphated chitosan and 
O-carboxymethyl chitin are indigestible by chitosanase. EC:3.2.1.132. 
The mechanism is likely to be inverting, and the 
probable catalytic neutrophile base is Asp, with the probable 
catalytic proton donor being Glu. (see the Chitosanase web-page 
from CAZY).
Length=166

 Score = 153 bits (389),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 52/80 (65%), Positives = 61/80 (76%), Gaps = 0/80 (0%)

Query  75   MDIDCDGANNSAGKCANDPSGQGETAFKSDVKKFGISDLDANIHPYVVFGNEDHSPKFKP  134
            MDIDCDGA    G+C   P GQ +T+FK  VK +GISDLDANIHPYVVFGNE   P F P
Sbjct  1    MDIDCDGAQGGPGRCGGSPDGQPQTSFKDTVKGYGISDLDANIHPYVVFGNEGKWPTFDP  60

Query  135  QSHGMQPLSVMAVVCNGQLV  154
            Q++G++PLSVMAVVCN +L 
Sbjct  61   QAYGVEPLSVMAVVCNNKLF  80



Lambda      K        H        a         alpha
   0.316    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00034380

Length=178
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429415 pfam07335, Glyco_hydro_75, Fungal chitosanase of glyco...  175     2e-57


>CDD:429415 pfam07335, Glyco_hydro_75, Fungal chitosanase of glycosyl hydrolase 
group 75.  This family consists of several fungal chitosanase 
proteins. Chitin, xylan, 6-O-sulphated chitosan and 
O-carboxymethyl chitin are indigestible by chitosanase. EC:3.2.1.132. 
The mechanism is likely to be inverting, and the 
probable catalytic neutrophile base is Asp, with the probable 
catalytic proton donor being Glu. (see the Chitosanase web-page 
from CAZY).
Length=166

 Score = 175 bits (447),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 60/88 (68%), Positives = 69/88 (78%), Gaps = 0/88 (0%)

Query  75   MDIDCDGANNSAGKCANDPSGQGETAFKSDVKKFGISDLDANIHPYVVFGNEDHSPKFKP  134
            MDIDCDGA    G+C   P GQ +T+FK  VK +GISDLDANIHPYVVFGNE   P F P
Sbjct  1    MDIDCDGAQGGPGRCGGSPDGQPQTSFKDTVKGYGISDLDANIHPYVVFGNEGKWPTFDP  60

Query  135  QSHGMQPLSVMAVVCNGQLHYGIWGDTN  162
            Q++G++PLSVMAVVCN +L YGIWGDTN
Sbjct  61   QAYGVEPLSVMAVVCNNKLFYGIWGDTN  88



Lambda      K        H        a         alpha
   0.317    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00029366

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429415 pfam07335, Glyco_hydro_75, Fungal chitosanase of glyco...  234     4e-80


>CDD:429415 pfam07335, Glyco_hydro_75, Fungal chitosanase of glycosyl hydrolase 
group 75.  This family consists of several fungal chitosanase 
proteins. Chitin, xylan, 6-O-sulphated chitosan and 
O-carboxymethyl chitin are indigestible by chitosanase. EC:3.2.1.132. 
The mechanism is likely to be inverting, and the 
probable catalytic neutrophile base is Asp, with the probable 
catalytic proton donor being Glu. (see the Chitosanase web-page 
from CAZY).
Length=166

 Score = 234 bits (599),  Expect = 4e-80, Method: Composition-based stats.
 Identities = 85/131 (65%), Positives = 98/131 (75%), Gaps = 4/131 (3%)

Query  75   MDIDCDGANNSAGKCANDPSGQGETAFKSDVKKFGISDLDANIHPYVVFGNEDHSPKFKP  134
            MDIDCDGA    G+C   P GQ +T+FK  VK +GISDLDANIHPYVVFGNE   P F P
Sbjct  1    MDIDCDGAQGGPGRCGGSPDGQPQTSFKDTVKGYGISDLDANIHPYVVFGNEGKWPTFDP  60

Query  135  QSHGMQPLSVMAVVCNGQLVYGIWGDTNGG----VSTGEASISLADLCFPNEHLDGNHGH  190
            Q++G++PLSVMAVVCN +L YGIWGDTNG       TGEASISLA  CF N+ L+GN+GH
Sbjct  61   QAYGVEPLSVMAVVCNNKLFYGIWGDTNGDDGPKPMTGEASISLATACFGNDGLNGNNGH  120

Query  191  DPNDVLFIGFT  201
            D  DVL+I FT
Sbjct  121  DEKDVLYIAFT  131



Lambda      K        H        a         alpha
   0.315    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00034381

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396496 pfam01937, DUF89, Protein of unknown function DUF89. T...  251     1e-80


>CDD:396496 pfam01937, DUF89, Protein of unknown function DUF89.  This family 
has no known function.
Length=303

 Score = 251 bits (642),  Expect = 1e-80, Method: Composition-based stats.
 Identities = 111/300 (37%), Positives = 144/300 (48%), Gaps = 62/300 (21%)

Query  155  RSIQRMLNSSKHWQNYDVFKRQKDSTFVKSRAAVEELASRYMQIVADTRLAQDESKEAAQ  214
            R +   L       NYD FK QK+ +  K+ AAV ELA R                    
Sbjct  59   RRLLEALG------NYDPFKEQKELSNEKALAAVPELAERL-------------------  93

Query  215  KLLFIEMTEIALWGNATDLSLLANLTLEDLQNLQGREAIQKSQRNIVDNDTDDVWAYLQR  274
            + LF E+ +I+LWGNA DL LLA     D Q  Q  E  +  +R ++ +DTD +W  L+ 
Sbjct  94   EELFKELLKISLWGNAIDLGLLAGA---DSQKDQESELREALERPLLVDDTDALWELLK-  149

Query  275  TAGQTRRQIDIILDNAGFEFFTDVLYAAYLLEAGIATSIRLHTKEFPWFVSDVIPSDVAS  334
              G+  +++D +LDNAGFE   D+L A +LL +G+AT + LH K  P FV+DV   D   
Sbjct  150  --GKRAKRVDYVLDNAGFELVFDLLLAEFLLRSGLATKVVLHVKGIP-FVNDVTMEDAEW  206

Query  335  LFEHLESSECFPVRKHLDQLVPRLRKLFQSAAITTTSDPFWTTPFSFHEMPTKAPALFKE  394
            L E             L  L   L +L     +  T   FWT    F EM    P L++E
Sbjct  207  LLE------------QLSALGAGLDELLALGKLIDTGSDFWTPGTDFWEMS---PELYEE  251

Query  395  LQNSYLVIFKGDLNYRKLTRDGLWPHTTTFETALGPLGKESGVKILALRTNKSDVCVGIP  454
            L+ + LVIFKGDLNYRKLT D  WP T                 IL LRT K DV  G+ 
Sbjct  252  LEKADLVIFKGDLNYRKLTGDRDWPPT---------------CPILFLRTAKCDVVAGLL  296



Lambda      K        H        a         alpha
   0.317    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00029367

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396496 pfam01937, DUF89, Protein of unknown function DUF89. T...  251     1e-81


>CDD:396496 pfam01937, DUF89, Protein of unknown function DUF89.  This family 
has no known function.
Length=303

 Score = 251 bits (644),  Expect = 1e-81, Method: Composition-based stats.
 Identities = 111/300 (37%), Positives = 144/300 (48%), Gaps = 62/300 (21%)

Query  98   RSIQRMLNSSKHWQNYDVFKRQKDSTFVKSRAAVEELASRYMQIVADTRLAQDESKEAAQ  157
            R +   L       NYD FK QK+ +  K+ AAV ELA R                    
Sbjct  59   RRLLEALG------NYDPFKEQKELSNEKALAAVPELAERL-------------------  93

Query  158  KLLFIEMTEIALWGNATDLSLLANLTLEDLQNLQGREAIQKSQRNIVDNDTDDVWAYLQR  217
            + LF E+ +I+LWGNA DL LLA     D Q  Q  E  +  +R ++ +DTD +W  L+ 
Sbjct  94   EELFKELLKISLWGNAIDLGLLAGA---DSQKDQESELREALERPLLVDDTDALWELLK-  149

Query  218  TAGQTRRQIDIILDNAGFEFFTDVLYAAYLLEAGIATSIRLHTKEFPWFVSDVIPSDVAS  277
              G+  +++D +LDNAGFE   D+L A +LL +G+AT + LH K  P FV+DV   D   
Sbjct  150  --GKRAKRVDYVLDNAGFELVFDLLLAEFLLRSGLATKVVLHVKGIP-FVNDVTMEDAEW  206

Query  278  LFEHLESSECFPVRKHLDQLVPRLRKLFQSAAITTTSDPFWTTPFSFHEMPTKAPALFKE  337
            L E             L  L   L +L     +  T   FWT    F EM    P L++E
Sbjct  207  LLE------------QLSALGAGLDELLALGKLIDTGSDFWTPGTDFWEMS---PELYEE  251

Query  338  LQNSYLVIFKGDLNYRKLTRDGLWPHTTTFETALGPLGKESGVKILALRTNKSDVCVGIP  397
            L+ + LVIFKGDLNYRKLT D  WP T                 IL LRT K DV  G+ 
Sbjct  252  LEKADLVIFKGDLNYRKLTGDRDWPPT---------------CPILFLRTAKCDVVAGLL  296



Lambda      K        H        a         alpha
   0.318    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 519925656


Query= TCONS_00034382

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396496 pfam01937, DUF89, Protein of unknown function DUF89. T...  275     2e-90


>CDD:396496 pfam01937, DUF89, Protein of unknown function DUF89.  This family 
has no known function.
Length=303

 Score = 275 bits (705),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 132/393 (34%), Positives = 178/393 (45%), Gaps = 97/393 (25%)

Query  26   TAETRWAKIIQGVIDDIGETAGAQDVGCQKRAESIAIQIALKDIKTGIEQNKPLTPLPDD  85
            TA  R   I+   IDD+           ++  + I  ++A  ++K  ++ +KPL PLP  
Sbjct  1    TAPERLPCILTQAIDDL-----ELATDDEEELKKIIGELA--ELKAELQTDKPLPPLP--  51

Query  86   GKLDIQEWNKQLAAIGECSWTNCPWLFGECYMYRSIQRMLNSSKHWQNYDVFKRQKDSTF  145
                                      F ECY+YR +   L       NYD FK QK+ + 
Sbjct  52   --------------------------FAECYLYRRLLEALG------NYDPFKEQKELSN  79

Query  146  VKSRAAVEELASRYMQIVADTRLAQDESKEAAQKLLFIEMTEIALWGNATDLSLLANLTL  205
             K+ AAV ELA R                    + LF E+ +I+LWGNA DL LLA    
Sbjct  80   EKALAAVPELAERL-------------------EELFKELLKISLWGNAIDLGLLAGA--  118

Query  206  EDLQNLQGREAIQKSQRNIVDNDTDDVWAYLQRTAGQTRRQIDIILDNAGFEFFTDVLYA  265
             D Q  Q  E  +  +R ++ +DTD +W  L+   G+  +++D +LDNAGFE   D+L A
Sbjct  119  -DSQKDQESELREALERPLLVDDTDALWELLK---GKRAKRVDYVLDNAGFELVFDLLLA  174

Query  266  AYLLEAGIATSIRLHTKEFPWFVSDVIPSDVASLFEHLESSECFPVRKHLDQLVPRLRKL  325
             +LL +G+AT + LH K  P FV+DV   D   L E             L  L   L +L
Sbjct  175  EFLLRSGLATKVVLHVKGIP-FVNDVTMEDAEWLLE------------QLSALGAGLDEL  221

Query  326  FQSAAITTTSDPFWTTPFSFHEMPTKAPALFKELQNSYLVIFKGDLNYRKLTRDGLWPHT  385
                 +  T   FWT    F EM    P L++EL+ + LVIFKGDLNYRKLT D  WP T
Sbjct  222  LALGKLIDTGSDFWTPGTDFWEMS---PELYEELEKADLVIFKGDLNYRKLTGDRDWPPT  278

Query  386  TTFETALGPLGKESGVKILALRTNKSDVCVGIP  418
                             IL LRT K DV  G+ 
Sbjct  279  ---------------CPILFLRTAKCDVVAGLL  296



Lambda      K        H        a         alpha
   0.318    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00029369

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396496 pfam01937, DUF89, Protein of unknown function DUF89. T...  249     6e-82


>CDD:396496 pfam01937, DUF89, Protein of unknown function DUF89.  This family 
has no known function.
Length=303

 Score = 249 bits (637),  Expect = 6e-82, Method: Composition-based stats.
 Identities = 112/302 (37%), Positives = 146/302 (48%), Gaps = 62/302 (21%)

Query  1    MYRSIQRMLNSSKHWQNYDVFKRQKDSTFVKSRAAVEELASRYMQIVADTRLAQDESKEA  60
            +YR +   L       NYD FK QK+ +  K+ AAV ELA R                  
Sbjct  57   LYRRLLEALG------NYDPFKEQKELSNEKALAAVPELAERL-----------------  93

Query  61   AQKLLFIEMTEIALWGNATDLSLLANLTLEDLQNLQGREAIQKSQRNIVDNDTDDVWAYL  120
              + LF E+ +I+LWGNA DL LLA     D Q  Q  E  +  +R ++ +DTD +W  L
Sbjct  94   --EELFKELLKISLWGNAIDLGLLAGA---DSQKDQESELREALERPLLVDDTDALWELL  148

Query  121  QRTAGQTRRQIDIILDNAGFEFFTDVLYAAYLLEAGIATSIRLHTKEFPWFVSDVIPSDV  180
            +   G+  +++D +LDNAGFE   D+L A +LL +G+AT + LH K  P FV+DV   D 
Sbjct  149  K---GKRAKRVDYVLDNAGFELVFDLLLAEFLLRSGLATKVVLHVKGIP-FVNDVTMEDA  204

Query  181  ASLFEHLESSECFPVRKHLDQLVPRLRKLFQSAAITTTSDPFWTTPFSFHEMPTKAPALF  240
              L E             L  L   L +L     +  T   FWT    F EM    P L+
Sbjct  205  EWLLE------------QLSALGAGLDELLALGKLIDTGSDFWTPGTDFWEMS---PELY  249

Query  241  KELQNSYLVIFKGDLNYRKLTRDGLWPHTTTFETALGPLGKESGVKILALRTNKSDVCVG  300
            +EL+ + LVIFKGDLNYRKLT D  WP T                 IL LRT K DV  G
Sbjct  250  EELEKADLVIFKGDLNYRKLTGDRDWPPT---------------CPILFLRTAKCDVVAG  294

Query  301  IP  302
            + 
Sbjct  295  LL  296



Lambda      K        H        a         alpha
   0.319    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00029370

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396496 pfam01937, DUF89, Protein of unknown function DUF89. T...  275     2e-90


>CDD:396496 pfam01937, DUF89, Protein of unknown function DUF89.  This family 
has no known function.
Length=303

 Score = 275 bits (705),  Expect = 2e-90, Method: Composition-based stats.
 Identities = 132/393 (34%), Positives = 178/393 (45%), Gaps = 97/393 (25%)

Query  26   TAETRWAKIIQGVIDDIGETAGAQDVGCQKRAESIAIQIALKDIKTGIEQNKPLTPLPDD  85
            TA  R   I+   IDD+           ++  + I  ++A  ++K  ++ +KPL PLP  
Sbjct  1    TAPERLPCILTQAIDDL-----ELATDDEEELKKIIGELA--ELKAELQTDKPLPPLP--  51

Query  86   GKLDIQEWNKQLAAIGECSWTNCPWLFGECYMYRSIQRMLNSSKHWQNYDVFKRQKDSTF  145
                                      F ECY+YR +   L       NYD FK QK+ + 
Sbjct  52   --------------------------FAECYLYRRLLEALG------NYDPFKEQKELSN  79

Query  146  VKSRAAVEELASRYMQIVADTRLAQDESKEAAQKLLFIEMTEIALWGNATDLSLLANLTL  205
             K+ AAV ELA R                    + LF E+ +I+LWGNA DL LLA    
Sbjct  80   EKALAAVPELAERL-------------------EELFKELLKISLWGNAIDLGLLAGA--  118

Query  206  EDLQNLQGREAIQKSQRNIVDNDTDDVWAYLQRTAGQTRRQIDIILDNAGFEFFTDVLYA  265
             D Q  Q  E  +  +R ++ +DTD +W  L+   G+  +++D +LDNAGFE   D+L A
Sbjct  119  -DSQKDQESELREALERPLLVDDTDALWELLK---GKRAKRVDYVLDNAGFELVFDLLLA  174

Query  266  AYLLEAGIATSIRLHTKEFPWFVSDVIPSDVASLFEHLESSECFPVRKHLDQLVPRLRKL  325
             +LL +G+AT + LH K  P FV+DV   D   L E             L  L   L +L
Sbjct  175  EFLLRSGLATKVVLHVKGIP-FVNDVTMEDAEWLLE------------QLSALGAGLDEL  221

Query  326  FQSAAITTTSDPFWTTPFSFHEMPTKAPALFKELQNSYLVIFKGDLNYRKLTRDGLWPHT  385
                 +  T   FWT    F EM    P L++EL+ + LVIFKGDLNYRKLT D  WP T
Sbjct  222  LALGKLIDTGSDFWTPGTDFWEMS---PELYEELEKADLVIFKGDLNYRKLTGDRDWPPT  278

Query  386  TTFETALGPLGKESGVKILALRTNKSDVCVGIP  418
                             IL LRT K DV  G+ 
Sbjct  279  ---------------CPILFLRTAKCDVVAGLL  296



Lambda      K        H        a         alpha
   0.318    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00029371

Length=482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         230     7e-71


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 230 bits (589),  Expect = 7e-71, Method: Composition-based stats.
 Identities = 134/426 (31%), Positives = 215/426 (50%), Gaps = 23/426 (5%)

Query  14   SLQGGIAAMYYLGALFGAFWAGSFSDAYGRIKGIWLACAWCLVGAILQASAVNLAH--ML  71
             L G I +++ +G   G+ +AG   D +GR K + +A    ++GA+LQ +A        L
Sbjct  46   VLSGLIVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQL  105

Query  72   CA-RVVAGVGVAFIIVIAPSWTAELAPAAHRGQMIAVTFLANFGGIALSSWIGFATSFTD  130
               RV+ G+GV    V+AP + +E+AP   RG + ++  LA   GI L+   G   + T 
Sbjct  106  IVGRVLVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTS  165

Query  131  YAGGAFRWRFCFACQVIPIFFLVIGTLLIPESPRWLVKVGRNDEAFEIITKLRGDGDRAH  190
             + G   WR     Q++P   L+IG L +PESPRWLV+ GR +EA E++ KLRG  D   
Sbjct  166  NSDG---WRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPD---  219

Query  191  PNVQKEIREIVAVVQMEHESQSSSYLQMFLGIGSGDIHIGRRIQLAFWLQVLMQYGTGIA  250
              V +E+ EI   ++   E++ +S+ ++F           +R+ +   LQ+  Q  TGI 
Sbjct  220  --VDRELDEIKDSLEAGQEAEKASWKELFSTKTR-----RQRLLIGVMLQIFQQL-TGIN  271

Query  251  AVVIYSGNIYRTAGFDDFKSNWLSAVCMTCGILGTGIAALTLDRVGRRWTLYWGAVVLSV  310
            A+  YS  I+   G  D  S  ++ +      + T IA   +DR GRR  L  GA  +++
Sbjct  272  AIFYYSTTIFENLGLSD--SFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAI  329

Query  311  ILFTLGGLNRGAVNNPDKAEQYGTGAAAMVFLYVVVFSSSWLMIPFIYPTEIFPTWLRAK  370
                LG     A+    K++  G  A   + L++  F+  W  +P++  +E+FP  +R+K
Sbjct  330  CFVILGI---VALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSK  386

Query  371  GNAFGVAGWAVGYGAGSLLVPVMFAGIQE-KTFYVFGAAMFAYIPIIYCFFPETAGRTLE  429
              A   A   +       L P++   I    TF++F   +  +I  ++ F PET GRTLE
Sbjct  387  AMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLE  446

Query  430  QIDFLF  435
            +ID LF
Sbjct  447  EIDELF  452



Lambda      K        H        a         alpha
   0.327    0.141    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0757    0.140     1.90     42.6     43.6 

Effective search space used: 591999806


Query= TCONS_00034383

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         166     8e-48


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 166 bits (422),  Expect = 8e-48, Method: Composition-based stats.
 Identities = 105/344 (31%), Positives = 170/344 (49%), Gaps = 20/344 (6%)

Query  20   TVVSAVAISYEGMSQGVMGAVNVAPEYGHRMGFADEQGKVIKP-SLQGGIAAMYYLGALF  78
             +V+A+     G   GV+GA     ++    G +     +     L G I +++ +G   
Sbjct  2    ALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFI  61

Query  79   GAFWAGSFSDAYGRIKGIWLACAWCLVGAILQASAVNLAH--MLCA-RVVAGVGVAFIIV  135
            G+ +AG   D +GR K + +A    ++GA+LQ +A        L   RV+ G+GV    V
Sbjct  62   GSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASV  121

Query  136  IAPSWTAELAPAAHRGQMIAVTFLANFGGIALSSWIGFATSFTDYAGGAFRWRFCFACQV  195
            +AP + +E+AP   RG + ++  LA   GI L+   G   + T  + G   WR     Q+
Sbjct  122  LAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDG---WRIPLGLQL  178

Query  196  IPIFFLVIGTLLIPESPRWLVKVGRNDEAFEIITKLRGDGDRAHPNVQKEIREIVAVVQM  255
            +P   L+IG L +PESPRWLV+ GR +EA E++ KLRG  D     V +E+ EI   ++ 
Sbjct  179  VPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPD-----VDRELDEIKDSLEA  233

Query  256  EHESQSSSYLQMFLGIGSGDIHIGRRIQLAFWLQVLMQYGTGIAAVVIYSGNIYRTAGFD  315
              E++ +S+ ++F           +R+ +   LQ+  Q  TGI A+  YS  I+   G  
Sbjct  234  GQEAEKASWKELFSTKTR-----RQRLLIGVMLQIFQQL-TGINAIFYYSTTIFENLGLS  287

Query  316  DFKSNWLSAVCMTCGILGTGIAALTLDRVGRRWTLYWGAVVLSV  359
            D  S  ++ +      + T IA   +DR GRR  L  GA  +++
Sbjct  288  D--SFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAI  329



Lambda      K        H        a         alpha
   0.328    0.141    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00029372

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         162     8e-47


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 162 bits (411),  Expect = 8e-47, Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 154/300 (51%), Gaps = 19/300 (6%)

Query  14   SLQGGIAAMYYLGALFGAFWAGSFSDAYGRIKGIWLACAWCLVGAILQASAVNLAH--ML  71
             L G I +++ +G   G+ +AG   D +GR K + +A    ++GA+LQ +A        L
Sbjct  46   VLSGLIVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQL  105

Query  72   CA-RVVAGVGVAFIIVIAPSWTAELAPAAHRGQMIAVTFLANFGGIALSSWIGFATSFTD  130
               RV+ G+GV    V+AP + +E+AP   RG + ++  LA   GI L+   G   + T 
Sbjct  106  IVGRVLVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTS  165

Query  131  YAGGAFRWRFCFACQVIPIFFLVIGTLLIPESPRWLVKVGRNDEAFEIITKLRGDGDRAH  190
             + G   WR     Q++P   L+IG L +PESPRWLV+ GR +EA E++ KLRG  D   
Sbjct  166  NSDG---WRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPD---  219

Query  191  PNVQKEIREIVAVVQMEHESQSSSYLQMFLGIGSGDIHIGRRIQLAFWLQVLMQYGTGIA  250
              V +E+ EI   ++   E++ +S+ ++F           +R+ +   LQ+  Q  TGI 
Sbjct  220  --VDRELDEIKDSLEAGQEAEKASWKELFSTKTR-----RQRLLIGVMLQIFQQL-TGIN  271

Query  251  AVVIYSGNIYRTAGFDDFKSNWLSAVCMTCGILGTGIAALTLDRVGRRWTLYWGAVVLSV  310
            A+  YS  I+   G  D  S  ++ +      + T IA   +DR GRR  L  GA  +++
Sbjct  272  AIFYYSTTIFENLGLSD--SFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAI  329



Lambda      K        H        a         alpha
   0.328    0.141    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00029373

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         234     9e-72


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 234 bits (598),  Expect = 9e-72, Method: Composition-based stats.
 Identities = 142/470 (30%), Positives = 231/470 (49%), Gaps = 24/470 (5%)

Query  20   TVVSAVAISYEGMSQGVMGAVNVAPEYGHRMGFADEQGKVIKP-SLQGGIAAMYYLGALF  78
             +V+A+     G   GV+GA     ++    G +     +     L G I +++ +G   
Sbjct  2    ALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFI  61

Query  79   GAFWAGSFSDAYGRIKGIWLACAWCLVGAILQASAVNLAH--MLCA-RVVAGVGVAFIIV  135
            G+ +AG   D +GR K + +A    ++GA+LQ +A        L   RV+ G+GV    V
Sbjct  62   GSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASV  121

Query  136  IAPSWTAELAPAAHRGQMIAVTFLANFGGIALSSWIGFATSFTDYAGGAFRWRFCFACQV  195
            +AP + +E+AP   RG + ++  LA   GI L+   G   + T  + G   WR     Q+
Sbjct  122  LAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDG---WRIPLGLQL  178

Query  196  IPIFFLVIGTLLIPESPRWLVKVGRNDEAFEIITKLRGDGDRAHPNVQKEIREIVAVVQM  255
            +P   L+IG L +PESPRWLV+ GR +EA E++ KLRG  D     V +E+ EI   ++ 
Sbjct  179  VPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPD-----VDRELDEIKDSLEA  233

Query  256  EHESQSSSYLQMFLGIGSGDIHIGRRIQLAFWLQVLMQYGTGIAAVVIYSGNIYRTAGFD  315
              E++ +S+ ++F           +R+ +   LQ+  Q  TGI A+  YS  I+   G  
Sbjct  234  GQEAEKASWKELFSTKTR-----RQRLLIGVMLQIFQQL-TGINAIFYYSTTIFENLGLS  287

Query  316  DFKSNWLSAVCMTCGILGTGIAALTLDRVGRRWTLYWGAVVLSVILFTLGGLNRGAVNNP  375
            D  S  ++ +      + T IA   +DR GRR  L  GA  +++    LG     A+   
Sbjct  288  D--SFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGI---VALLGV  342

Query  376  DKAEQYGTGAAAMVFLYVVVFSSSWLMIPFIYPTEIFPTWLRAKGNAFGVAGWAVGYGAG  435
             K++  G  A   + L++  F+  W  +P++  +E+FP  +R+K  A   A   +     
Sbjct  343  SKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLI  402

Query  436  SLLVPVMFAGIQE-KTFYVFGAAMFAYIPIIYCFFPETAGRTLEQIDFLF  484
              L P++   I    TF++F   +  +I  ++ F PET GRTLE+ID LF
Sbjct  403  GFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.327    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 666189040


Query= TCONS_00029374

Length=265


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00029376

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            81.7    2e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 81.7 bits (202),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 70/401 (17%), Positives = 129/401 (32%), Gaps = 58/401 (14%)

Query  58   IGLSQLFSVGGLGNAAFSVQEIGRSLNATSNGQMSWFLSAYSLCGGVFVLVTGRLGDHFG  117
            + L+   +  G      ++  +       S  ++   L+ +SL   +   + GRL D FG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  118  HKYVFLFGWMWMALWSLVSGFAKDVILFDIARGMTGIGNGALVPNSFALLARAFPAFSVK  177
             + V L G +  AL  L+  FA  + L  + R + G+G GAL P + AL+A  FP    +
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPP--EE  118

Query  178  KNIAFAFLGFCAPSGYIFGGLIGAAFAEKVTWRWGFWFWAIGCLVIGAVTYFIVPHSVGS  237
            +  A   +      G   G L+G   A    WR  F   AI  L+   +     P     
Sbjct  119  RGRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  238  PIPGLSIKQFDYLGSVLGISGLILFSFAWNQASVVGWEEPYVYALLIVGILLIVAFAFSQ  297
                                                                      ++
Sbjct  179  RPKP------------------------------------------------------AE  184

Query  298  SRVQAPVLPNPLWTRKGFAPVVTAMSFGWMSFGIFLYYTTIYILTIHKAQPLTAVAQMVP  357
                + ++      R     ++ A+     +F   L Y  +Y   +     L A   +  
Sbjct  185  EARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLG-LSALLAGLLLGL  243

Query  358  LVIGGLFATASVGIFIAKVPAQYIFGVSMFSFFIGCLLMSFANYSSVYWAFIFPSCLLVV  417
              + G      +G    ++  +    +++    +  L +   + +      +    LL  
Sbjct  244  GGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGF  303

Query  418  GGPDLSFASSGILISNAVLPEEQGIAGSFISTVVQYSISIG  458
            G   L F +   L+S+    EE+G A    +T      ++G
Sbjct  304  GFG-LVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG  343



Lambda      K        H        a         alpha
   0.326    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00034384

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433132 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hyd...  131     6e-40


>CDD:433132 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase. 
 This family is part of the HAD superfamily.
Length=101

 Score = 131 bits (331),  Expect = 6e-40, Method: Composition-based stats.
 Identities = 47/104 (45%), Positives = 63/104 (61%), Gaps = 3/104 (3%)

Query  23   WLFDCDGVIWSGDHATEGASKAIDFLRDHGKRVVFVTNNAARSRKMLKTKFDRLRIAASE  82
            +LFD DGV+W G     GA++A+  LR  GK VVFVTNN++RSR+    K  +L     E
Sbjct  1    FLFDIDGVLWRGGEPIPGAAEALRALRAAGKPVVFVTNNSSRSREEYAEKLRKLGFDIDE  60

Query  83   DEIVSSSFAAAVYLKEVLKFPADRKVFVMGMEGVEAELDAVHIK  126
            DEI++S  AAA YLKE       +KV V+G EG+  EL+    +
Sbjct  61   DEIITSGTAAADYLKER---KFGKKVLVIGSEGLREELEEAGFE  101



Lambda      K        H        a         alpha
   0.319    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00029377

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like               83.4    2e-21


>CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like.  
Length=75

 Score = 83.4 bits (207),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 0/73 (0%)

Query  164  VIGKPHAPMLDTVKSLYNIDPTRTIFVGDNLYTDILFAREGRVDSLLVLTGVTKEEDCQT  223
            V GKP+  ML+   +   +DP RT+ +GD L TDIL ARE    ++LVLTGVT+  D + 
Sbjct  1    VCGKPNPGMLERALARLGLDPERTVMIGDRLDTDILGAREAGARTILVLTGVTRPADLEK  60

Query  224  EGIWPTFIAPSIS  236
              I P ++   ++
Sbjct  61   APIRPDYVVDDLA  73



Lambda      K        H        a         alpha
   0.318    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00034385

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00029379

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433132 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hyd...  131     7e-39
CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like               83.0    9e-21


>CDD:433132 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase. 
 This family is part of the HAD superfamily.
Length=101

 Score = 131 bits (332),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 47/104 (45%), Positives = 63/104 (61%), Gaps = 3/104 (3%)

Query  23   WLFDCDGVIWSGDHATEGASKAIDFLRDHGKRVVFVTNNAARSRKMLKTKFDRLRIAASE  82
            +LFD DGV+W G     GA++A+  LR  GK VVFVTNN++RSR+    K  +L     E
Sbjct  1    FLFDIDGVLWRGGEPIPGAAEALRALRAAGKPVVFVTNNSSRSREEYAEKLRKLGFDIDE  60

Query  83   DEIVSSSFAAAVYLKEVLKFPADRKVFVMGMEGVEAELDAVHIK  126
            DEI++S  AAA YLKE       +KV V+G EG+  EL+    +
Sbjct  61   DEIITSGTAAADYLKER---KFGKKVLVIGSEGLREELEEAGFE  101


>CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like.  
Length=75

 Score = 83.0 bits (206),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 0/73 (0%)

Query  236  VIGKPHAPMLDTVKSLYNIDPTRTIFVGDNLYTDILFAREGRVDSLLVLTGVTKEEDCQT  295
            V GKP+  ML+   +   +DP RT+ +GD L TDIL ARE    ++LVLTGVT+  D + 
Sbjct  1    VCGKPNPGMLERALARLGLDPERTVMIGDRLDTDILGAREAGARTILVLTGVTRPADLEK  60

Query  296  EGIWPTFIAPSIS  308
              I P ++   ++
Sbjct  61   APIRPDYVVDDLA  73



Lambda      K        H        a         alpha
   0.319    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00029380

Length=202


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198869230


Query= TCONS_00029383

Length=669


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 849479040


Query= TCONS_00029382

Length=779


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 996779120


Query= TCONS_00029381

Length=819


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1039312136


Query= TCONS_00034386

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396514 pfam01965, DJ-1_PfpI, DJ-1/PfpI family. The family inc...  79.6    6e-19


>CDD:396514 pfam01965, DJ-1_PfpI, DJ-1/PfpI family.  The family includes 
the protease PfpI. This domain is also found in transcriptional 
regulators.
Length=165

 Score = 79.6 bits (197),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 43/200 (22%), Positives = 75/200 (38%), Gaps = 37/200 (19%)

Query  5    HRILALVYNEFEALDLFGPLGAIVPRSDYYTLALVSLHNLDSPHGVETSMKNGIGVIPTL  64
             ++L L+ + FE ++L  P   +  R+      +       S  G E     G+ V    
Sbjct  1    KKVLVLLADGFEDIELIYPADVLR-RAGIKVTVV-------SVDGGEVKGSRGVKVTVDA  52

Query  65   SLAEALREDQQFDTLFIPGGFGMMPLVWD-PILLQRIGQLVDRAPNVFSVCTGSILLAAT  123
            SL +   +   +D L +PGG      + D   L++ +    ++   V ++C G  +LAA 
Sbjct  53   SLDDV--KPDDYDALVLPGGRAGPERLRDNEKLVEFVKDFYEKGKPVAAICHGPQVLAAA  110

Query  124  GRLDGRKATTNKRLYDELTPKRIIPPSCFQISRAHANIFFFNRLDPGVQWQKRARWVQDG  183
            G L GRK T++  + D+L                          + G  +  +   V DG
Sbjct  111  GVLKGRKVTSHPAVKDDLI-------------------------NAGATYVDK-PVVVDG  144

Query  184  KFLTSSGVTAGIDAGFAFLA  203
              +TS G     +     L 
Sbjct  145  NLVTSRGPGDAPEFALEILE  164



Lambda      K        H        a         alpha
   0.322    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00034387

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396514 pfam01965, DJ-1_PfpI, DJ-1/PfpI family. The family inc...  79.6    6e-19


>CDD:396514 pfam01965, DJ-1_PfpI, DJ-1/PfpI family.  The family includes 
the protease PfpI. This domain is also found in transcriptional 
regulators.
Length=165

 Score = 79.6 bits (197),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 43/200 (22%), Positives = 75/200 (38%), Gaps = 37/200 (19%)

Query  5    HRILALVYNEFEALDLFGPLGAIVPRSDYYTLALVSLHNLDSPHGVETSMKNGIGVIPTL  64
             ++L L+ + FE ++L  P   +  R+      +       S  G E     G+ V    
Sbjct  1    KKVLVLLADGFEDIELIYPADVLR-RAGIKVTVV-------SVDGGEVKGSRGVKVTVDA  52

Query  65   SLAEALREDQQFDTLFIPGGFGMMPLVWD-PILLQRIGQLVDRAPNVFSVCTGSILLAAT  123
            SL +   +   +D L +PGG      + D   L++ +    ++   V ++C G  +LAA 
Sbjct  53   SLDDV--KPDDYDALVLPGGRAGPERLRDNEKLVEFVKDFYEKGKPVAAICHGPQVLAAA  110

Query  124  GRLDGRKATTNKRLYDELTPKRIIPPSCFQISRAHANIFFFNRLDPGVQWQKRARWVQDG  183
            G L GRK T++  + D+L                          + G  +  +   V DG
Sbjct  111  GVLKGRKVTSHPAVKDDLI-------------------------NAGATYVDK-PVVVDG  144

Query  184  KFLTSSGVTAGIDAGFAFLA  203
              +TS G     +     L 
Sbjct  145  NLVTSRGPGDAPEFALEILE  164



Lambda      K        H        a         alpha
   0.322    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00034388

Length=669


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 849479040


Query= TCONS_00034389

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396514 pfam01965, DJ-1_PfpI, DJ-1/PfpI family. The family inc...  79.6    6e-19


>CDD:396514 pfam01965, DJ-1_PfpI, DJ-1/PfpI family.  The family includes 
the protease PfpI. This domain is also found in transcriptional 
regulators.
Length=165

 Score = 79.6 bits (197),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 43/200 (22%), Positives = 75/200 (38%), Gaps = 37/200 (19%)

Query  5    HRILALVYNEFEALDLFGPLGAIVPRSDYYTLALVSLHNLDSPHGVETSMKNGIGVIPTL  64
             ++L L+ + FE ++L  P   +  R+      +       S  G E     G+ V    
Sbjct  1    KKVLVLLADGFEDIELIYPADVLR-RAGIKVTVV-------SVDGGEVKGSRGVKVTVDA  52

Query  65   SLAEALREDQQFDTLFIPGGFGMMPLVWD-PILLQRIGQLVDRAPNVFSVCTGSILLAAT  123
            SL +   +   +D L +PGG      + D   L++ +    ++   V ++C G  +LAA 
Sbjct  53   SLDDV--KPDDYDALVLPGGRAGPERLRDNEKLVEFVKDFYEKGKPVAAICHGPQVLAAA  110

Query  124  GRLDGRKATTNKRLYDELTPKRIIPPSCFQISRAHANIFFFNRLDPGVQWQKRARWVQDG  183
            G L GRK T++  + D+L                          + G  +  +   V DG
Sbjct  111  GVLKGRKVTSHPAVKDDLI-------------------------NAGATYVDK-PVVVDG  144

Query  184  KFLTSSGVTAGIDAGFAFLA  203
              +TS G     +     L 
Sbjct  145  NLVTSRGPGDAPEFALEILE  164



Lambda      K        H        a         alpha
   0.322    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00029385

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396514 pfam01965, DJ-1_PfpI, DJ-1/PfpI family. The family inc...  79.6    6e-19


>CDD:396514 pfam01965, DJ-1_PfpI, DJ-1/PfpI family.  The family includes 
the protease PfpI. This domain is also found in transcriptional 
regulators.
Length=165

 Score = 79.6 bits (197),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 43/200 (22%), Positives = 75/200 (38%), Gaps = 37/200 (19%)

Query  5    HRILALVYNEFEALDLFGPLGAIVPRSDYYTLALVSLHNLDSPHGVETSMKNGIGVIPTL  64
             ++L L+ + FE ++L  P   +  R+      +       S  G E     G+ V    
Sbjct  1    KKVLVLLADGFEDIELIYPADVLR-RAGIKVTVV-------SVDGGEVKGSRGVKVTVDA  52

Query  65   SLAEALREDQQFDTLFIPGGFGMMPLVWD-PILLQRIGQLVDRAPNVFSVCTGSILLAAT  123
            SL +   +   +D L +PGG      + D   L++ +    ++   V ++C G  +LAA 
Sbjct  53   SLDDV--KPDDYDALVLPGGRAGPERLRDNEKLVEFVKDFYEKGKPVAAICHGPQVLAAA  110

Query  124  GRLDGRKATTNKRLYDELTPKRIIPPSCFQISRAHANIFFFNRLDPGVQWQKRARWVQDG  183
            G L GRK T++  + D+L                          + G  +  +   V DG
Sbjct  111  GVLKGRKVTSHPAVKDDLI-------------------------NAGATYVDK-PVVVDG  144

Query  184  KFLTSSGVTAGIDAGFAFLA  203
              +TS G     +     L 
Sbjct  145  NLVTSRGPGDAPEFALEILE  164



Lambda      K        H        a         alpha
   0.322    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00029384

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00034390

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00029386

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00034391

Length=568


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 711347728


Query= TCONS_00034392

Length=568


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 711347728


Query= TCONS_00029387

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00029388

Length=287


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00029389

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00029390

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00029391

Length=722


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 913835456


Query= TCONS_00034393

Length=123
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460788 pfam03055, RPE65, Retinal pigment epithelial membrane ...  125     5e-36


>CDD:460788 pfam03055, RPE65, Retinal pigment epithelial membrane protein. 
 This family represents a retinal pigment epithelial membrane 
receptor which is abundantly expressed in retinal pigment 
epithelium, and binds plasma retinal binding protein. The 
family also includes the sequence related neoxanthin cleavage 
enzyme in plants and lignostilbene-alpha,beta-dioxygenase 
in bacteria.
Length=449

 Score = 125 bits (317),  Expect = 5e-36, Method: Composition-based stats.
 Identities = 34/95 (36%), Positives = 51/95 (54%), Gaps = 0/95 (0%)

Query  17   GGGYPLYNSLAHFDNATGQTEVYFPGNTHLVQEPVFIPRKDSTTEGDGWVLALVNNYATM  76
                 L++ L   D  TG+ +V+  G      EP+F+PR     E DGW+L++V +  T 
Sbjct  355  PSDNALFDGLVKVDLETGEEQVFSFGPGWYPGEPIFVPRPGDAEEDDGWLLSVVYDGDTG  414

Query  77   ASELHLLDTRDFTHAQAKILLPIRLRHGLHGSWVD  111
             SEL +LD +D     A+  LP R+ +G HG+WV 
Sbjct  415  RSELLVLDAKDLEEGVARAELPHRVPYGFHGTWVP  449



Lambda      K        H        a         alpha
   0.319    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0722    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00034394

Length=355
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460788 pfam03055, RPE65, Retinal pigment epithelial membrane ...  358     1e-122


>CDD:460788 pfam03055, RPE65, Retinal pigment epithelial membrane protein. 
 This family represents a retinal pigment epithelial membrane 
receptor which is abundantly expressed in retinal pigment 
epithelium, and binds plasma retinal binding protein. The 
family also includes the sequence related neoxanthin cleavage 
enzyme in plants and lignostilbene-alpha,beta-dioxygenase 
in bacteria.
Length=449

 Score = 358 bits (922),  Expect = 1e-122, Method: Composition-based stats.
 Identities = 135/345 (39%), Positives = 185/345 (54%), Gaps = 25/345 (7%)

Query  1    MDPITLETKGLYDFEGQLPALTFTAHPKFDPVTGEMVCFGYEARGDGTPDVCYYRVSPTG  60
            +DP TLET G  DF+GQ    TFTAHPK DP TGE+  FGY A   G P + YY   P G
Sbjct  128  LDPETLETLGRDDFDGQ-LGKTFTAHPKVDPETGELYNFGYSA---GGPPLTYYVFDPDG  183

Query  61   QFKEVVWLVAPVVAMIHDFAVTDNWVVFPIIPQVCDIE-RMKQGGEHWQWSPETPLYLGV  119
            +    VW+  P  A IHDFA+T+N+VVF   P V D+E R+K GG+  +W PE P   GV
Sbjct  184  KLTREVWIPLPGPAYIHDFAITENYVVFVEQPLVFDLEERLKSGGDALEWDPEKPTRFGV  243

Query  120  IPRRGAKGEDVKWFQYKNSFPGHTANAYEDKEGHLVIDLGLSEKNVF-FWWPDAQGNAPE  178
            IPRRG   ++V+WF+    F  HTANAYE++ G +V+DL   + +VF   + DA+   P 
Sbjct  244  IPRRG---KEVRWFETPPFFVFHTANAYEEEGGEVVVDLCRYDDDVFDPLYLDAKDFDPL  300

Query  179  PSSIHSQLVRFTLNPHAEDLALPEPKILHQGNSEFYRIDDRFATHSYRHCYFDLMDPQLG  238
            P    S+L R+ L+     +    P+ L     EF RI+ R+    YR+ Y         
Sbjct  301  P---PSRLRRYRLDLKTGGVTRETPEALSDRPCEFPRINPRYVGRKYRYVYGAAARG---  354

Query  239  TDFERIRPNLGGGYPLYNSLAHFDNATGQTEVYFPGNTHLVQEPVFIPRKDSTTEGDGWV  298
                           L++ L   D  TG+ +V+  G      EP+F+PR     E DGW+
Sbjct  355  ----------PSDNALFDGLVKVDLETGEEQVFSFGPGWYPGEPIFVPRPGDAEEDDGWL  404

Query  299  LALVNNYATMASELHLLDTRDFTHAQAKILLPIRLRHGLHGSWVD  343
            L++V +  T  SEL +LD +D     A+  LP R+ +G HG+WV 
Sbjct  405  LSVVYDGDTGRSELLVLDAKDLEEGVARAELPHRVPYGFHGTWVP  449



Lambda      K        H        a         alpha
   0.321    0.140    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00029392

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460788 pfam03055, RPE65, Retinal pigment epithelial membrane ...  516     0.0  


>CDD:460788 pfam03055, RPE65, Retinal pigment epithelial membrane protein. 
 This family represents a retinal pigment epithelial membrane 
receptor which is abundantly expressed in retinal pigment 
epithelium, and binds plasma retinal binding protein. The 
family also includes the sequence related neoxanthin cleavage 
enzyme in plants and lignostilbene-alpha,beta-dioxygenase 
in bacteria.
Length=449

 Score = 516 bits (1332),  Expect = 0.0, Method: Composition-based stats.
 Identities = 194/471 (41%), Positives = 258/471 (55%), Gaps = 28/471 (6%)

Query  20   PCRVEGDISQLEVYGEIPKEIDGVFYRVMPDPQLPPFIENDPWFNGDGNVTAFRIQDGRA  79
            P R EG      + GEIP  +DG  YR  P P   PF     WF+GDG V AFR +DGR 
Sbjct  3    PVREEGPEPLEVIEGEIPAWLDGTLYRNGPGPLFGPFRYYH-WFDGDGMVHAFRFKDGRV  61

Query  80   SFRQRYVRTEKFMRERKAQRALLGKYRNKFTD--AVEFRVRSTANTNVVFFNGQLLALKE  137
            ++R RYVRT+++  ER A  AL G Y    T   AV  +V++ ANTNVV+  G+LLAL E
Sbjct  62   TYRNRYVRTDRYKAERAAGGALFGGYGGPATGGPAVRGKVKNNANTNVVYHGGRLLALTE  121

Query  138  DSPPYAMDPITLETKGLYDFEGQLPALTFTAHPKFDPVTGEMVCFGYEARGDGTPDVCYY  197
               PY +DP TLET G  DF+GQ    TFTAHPK DP TGE+  FGY A   G P + YY
Sbjct  122  AGLPYELDPETLETLGRDDFDGQ-LGKTFTAHPKVDPETGELYNFGYSA---GGPPLTYY  177

Query  198  RVSPTGQFKEVVWLVAPVVAMIHDFAVTDNWVVFPIIPQVCDIE-RMKQGGEHWQWSPET  256
               P G+    VW+  P  A IHDFA+T+N+VVF   P V D+E R+K GG+  +W PE 
Sbjct  178  VFDPDGKLTREVWIPLPGPAYIHDFAITENYVVFVEQPLVFDLEERLKSGGDALEWDPEK  237

Query  257  PLYLGVIPRRGAKGEDVKWFQYKNSFPGHTANAYEDKEGHLVIDLGLSEKNVF-FWWPDA  315
            P   GVIPRRG   ++V+WF+    F  HTANAYE++ G +V+DL   + +VF   + DA
Sbjct  238  PTRFGVIPRRG---KEVRWFETPPFFVFHTANAYEEEGGEVVVDLCRYDDDVFDPLYLDA  294

Query  316  QGNAPEPSSIHSQLVRFTLNPHAEDLALPEPKILHQGNSEFYRIDDRFATHSYRHCYFDL  375
            +   P P    S+L R+ L+     +    P+ L     EF RI+ R+    YR+ Y   
Sbjct  295  KDFDPLP---PSRLRRYRLDLKTGGVTRETPEALSDRPCEFPRINPRYVGRKYRYVYGAA  351

Query  376  MDPQLGTDFERIRPNLGGGYPLYNSLAHFDNATGQTEVYFPGNTHLVQEPVFIPRKDSTT  435
                                 L++ L   D  TG+ +V+  G      EP+F+PR     
Sbjct  352  ARG-------------PSDNALFDGLVKVDLETGEEQVFSFGPGWYPGEPIFVPRPGDAE  398

Query  436  EGDGWVLALVNNYATMASELHLLDTRDFTHAQAKILLPIRLRHGLHGSWVD  486
            E DGW+L++V +  T  SEL +LD +D     A+  LP R+ +G HG+WV 
Sbjct  399  EDDGWLLSVVYDGDTGRSELLVLDAKDLEEGVARAELPHRVPYGFHGTWVP  449



Lambda      K        H        a         alpha
   0.321    0.140    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00029393

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00034396

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00029394

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00034397

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462300 pfam07883, Cupin_2, Cupin domain. This family represen...  54.6    9e-11


>CDD:462300 pfam07883, Cupin_2, Cupin domain.  This family represents the 
conserved barrel domain of the 'cupin' superfamily ('cupa' 
is the Latin term for a small barrel).
Length=71

 Score = 54.6 bits (132),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 29/65 (45%), Gaps = 2/65 (3%)

Query  1   MPNETAPAHRHT-AFAMRYIIEGNGGFTAVHGRRIRMQKGDVILTPTWNYHDHGKDGSGP  59
            P E++P HRH       Y++EG G  T V G  + ++ GD +  P    H     G  P
Sbjct  6   PPGESSPPHRHPGEDEFFYVLEGEGELT-VDGEEVVLKAGDSVYFPAGVPHRFRNTGDEP  64

Query  60  MIWLD  64
              LD
Sbjct  65  ARLLD  69



Lambda      K        H        a         alpha
   0.321    0.138    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 277421980


Query= TCONS_00029395

Length=307


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00034399

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00034398

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  68.5    4e-13


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 68.5 bits (168),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 51/222 (23%), Positives = 87/222 (39%), Gaps = 32/222 (14%)

Query  166  GIDIRLGARVV----DYDPVLGSITLKDGTSH---RGDLVVAADGIKSVARKVVLNGEDM  218
            G  +R G  V+    D D V   +  +        R   +V  DG +S  RK       +
Sbjct  114  GAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRK------TL  167

Query  219  PFIKPGFAAYRA-VVDVNQMRNDPEVSWILERPALNVWIG--DSRHVMTYTIGAGNAFNM  275
                 GF       +DV    + P++S  +ER  ++  I    SR  M     +      
Sbjct  168  GIEFEGFEGVPFGSLDVLF--DAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSAGRERY  225

Query  276  V------LSHRDTSDPATWDKQTALQDMKAEFQGWDPVLTKIIGMVEKTIKWPLMSGSLL  329
                       +  +  T ++    Q +++   G D  L +I+    K+I W  ++  + 
Sbjct  226  YVQVPWDEEVEERPEEFTDEE--LKQRLRSIV-GIDLALVEIL---WKSI-WG-VASRVA  277

Query  330  TRWTRGKLVILGDAAHAMLPYMSQGAAMAVEDGVALARSLSH  371
            TR+ +G++ + GDAAH   P   QG   A++D   LA  L+ 
Sbjct  278  TRYRKGRVFLAGDAAHIHPPTGGQGLNTAIQDAFNLAWKLAA  319



Lambda      K        H        a         alpha
   0.319    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00029396

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00029398

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  255     2e-82


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 255 bits (655),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 122/344 (35%), Positives = 182/344 (53%), Gaps = 33/344 (10%)

Query  1    MILGLRAVVAPIAAGNVAILKACALRQADAEREIVSGLNISQGSELSPQTHYLVASLFQE  60
            ++L    +   +AAGN  +LK                      SEL+P T  L+A LF+E
Sbjct  140  LLLPAWKIAPALAAGNTVVLKP---------------------SELTPLTALLLAELFEE  178

Query  61   AGFPPGVLNFLLYRPQDAPDIFDVLINHPAIKKCNFTGSTQVGRIIASQAALALKPVLLE  120
            AG P GVLN +        ++ + L+ HP ++K +FTGST VGR IA  AA  LK V LE
Sbjct  179  AGLPAGVLNVV---TGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLE  235

Query  121  LGGKNFAVVLDDADLDLAAREITKGAFLNNGQICMSTDLVLVTTAVASALEDKILAILQD  180
            LGGKN  +VL+DADLD A      GAF N GQ+C +T  +LV  ++     +K++   + 
Sbjct  236  LGGKNPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKK  295

Query  181  IN-----TPSV----LISPAAKSKVEMLVSDAHDRGAQIHAHPMGHDASPRSFPPTVVTG  231
            +       P      LIS A   +V   V DA + GA++         +     PTV+  
Sbjct  296  LKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLDNGYFVEPTVLAN  355

Query  232  LTPEMKLYEIESFAPVVGIMAVEREEQFMAIIEAAKYGLSSSIFSRNHYRSLDLAGTIKA  291
            +TP+M++ + E F PV+ ++  + EE+ + I    +YGL++ +F+ +  R+L +A  ++A
Sbjct  356  VTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEA  415

Query  292  GAVHINSMTVHDEPTLPHGGYGDSGWGRFGARWGLEEFIQTKIV  335
            G V IN  T  D   LP GG+  SG+GR G  +GLEE+ + K V
Sbjct  416  GMVWINDYTTGDADGLPFGGFKQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.320    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00029397

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  255     2e-82


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 255 bits (655),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 122/344 (35%), Positives = 182/344 (53%), Gaps = 33/344 (10%)

Query  1    MILGLRAVVAPIAAGNVAILKACALRQADAEREIVSGLNISQGSELSPQTHYLVASLFQE  60
            ++L    +   +AAGN  +LK                      SEL+P T  L+A LF+E
Sbjct  140  LLLPAWKIAPALAAGNTVVLKP---------------------SELTPLTALLLAELFEE  178

Query  61   AGFPPGVLNFLLYRPQDAPDIFDVLINHPAIKKCNFTGSTQVGRIIASQAALALKPVLLE  120
            AG P GVLN +        ++ + L+ HP ++K +FTGST VGR IA  AA  LK V LE
Sbjct  179  AGLPAGVLNVV---TGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLE  235

Query  121  LGGKNFAVVLDDADLDLAAREITKGAFLNNGQICMSTDLVLVTTAVASALEDKILAILQD  180
            LGGKN  +VL+DADLD A      GAF N GQ+C +T  +LV  ++     +K++   + 
Sbjct  236  LGGKNPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKK  295

Query  181  IN-----TPSV----LISPAAKSKVEMLVSDAHDRGAQIHAHPMGHDASPRSFPPTVVTG  231
            +       P      LIS A   +V   V DA + GA++         +     PTV+  
Sbjct  296  LKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLDNGYFVEPTVLAN  355

Query  232  LTPEMKLYEIESFAPVVGIMAVEREEQFMAIIEAAKYGLSSSIFSRNHYRSLDLAGTIKA  291
            +TP+M++ + E F PV+ ++  + EE+ + I    +YGL++ +F+ +  R+L +A  ++A
Sbjct  356  VTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEA  415

Query  292  GAVHINSMTVHDEPTLPHGGYGDSGWGRFGARWGLEEFIQTKIV  335
            G V IN  T  D   LP GG+  SG+GR G  +GLEE+ + K V
Sbjct  416  GMVWINDYTTGDADGLPFGGFKQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.320    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00034400

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00034402

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  326     2e-107


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 326 bits (839),  Expect = 2e-107, Method: Composition-based stats.
 Identities = 154/443 (35%), Positives = 226/443 (51%), Gaps = 41/443 (9%)

Query  97   WSKTTPIERRTLLFKLAQVLRNRAKEIKRVCDEEIHCG-PRW---AEIITNDAIGLIEEY  152
            W KT   ER  +L K A +L  R  E+  +  E +  G P      E+  + AI ++  Y
Sbjct  45   WRKTPAAERAAILRKAADLLEERKDELAEL--ETLENGKPLAEARGEV--DRAIDVLRYY  100

Query  153  GALTTSIATGSLPFIQHGHGLVLKEPLGVVLGIAPWNAPMILGLRAVVAPIAAGNVAILK  212
              L   +   +LP          +EPLGVV  I PWN P++L    +   +AAGN  +LK
Sbjct  101  AGLARRLDGETLPSDPGRLAYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLK  160

Query  213  ACALRQADAEREIVSGLNISQGSELSPQTHYLVASLFQEAGFPPGVLNFLLYRPQDAPDI  272
                                  SEL+P T  L+A LF+EAG P GVLN +        ++
Sbjct  161  P---------------------SELTPLTALLLAELFEEAGLPAGVLNVV---TGSGAEV  196

Query  273  FDVLINHPAIKKCNFTGSTQVGRIIASQAALALKPVLLELGGKNFAVVLDDADLDLAARE  332
             + L+ HP ++K +FTGST VGR IA  AA  LK V LELGGKN  +VL+DADLD A   
Sbjct  197  GEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIVLEDADLDAAVEA  256

Query  333  ITKGAFLNNGQICMSTDLVLVTTAVASALEDKILAILQDIN-----TPSV----LISPAA  383
               GAF N GQ+C +T  +LV  ++     +K++   + +       P      LIS A 
Sbjct  257  AVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKLKVGDPLDPDTDMGPLISKAQ  316

Query  384  KSKVEMLVSDAHDRGAQIHAHPMGHDASPRSFPPTVVTGLTPEMKLYEIESFAPVVGIMA  443
              +V   V DA + GA++         +     PTV+  +TP+M++ + E F PV+ ++ 
Sbjct  317  LERVLKYVEDAKEEGAKLLTGGEAGLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIR  376

Query  444  VEREEQFMAIIEAAKYGLSSSIFSRNHYRSLDLAGTIKAGAVHINSMTVHDEPTLPHGGY  503
             + EE+ + I    +YGL++ +F+ +  R+L +A  ++AG V IN  T  D   LP GG+
Sbjct  377  FKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFGGF  436

Query  504  GDSGWGRFGARWGLEEFIQTKIV  526
              SG+GR G  +GLEE+ + K V
Sbjct  437  KQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 664674974


Query= TCONS_00034401

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  268     1e-87


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 268 bits (687),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 122/323 (38%), Positives = 182/323 (56%), Gaps = 12/323 (4%)

Query  1    MILGLRAVVAPIAAGNVAILKGSELSPQTHYLVASLFQEAGFPPGVLNFLLYRPQDAPDI  60
            ++L    +   +AAGN  +LK SEL+P T  L+A LF+EAG P GVLN +        ++
Sbjct  140  LLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVV---TGSGAEV  196

Query  61   FDVLINHPAIKKCNFTGSTQVGRIIASQAALALKPVLLELGGKNFAVVLDDADLDLAARE  120
             + L+ HP ++K +FTGST VGR IA  AA  LK V LELGGKN  +VL+DADLD A   
Sbjct  197  GEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIVLEDADLDAAVEA  256

Query  121  ITKGAFLNNGQICMSTDLVLVTTAVASALEDKILAILQDIN-----TPSV----LISPAA  171
               GAF N GQ+C +T  +LV  ++     +K++   + +       P      LIS A 
Sbjct  257  AVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKLKVGDPLDPDTDMGPLISKAQ  316

Query  172  KSKVEMLVSDAHDRGAQIHAHPMGHDASPRSFPPTVVTGLTPEMKLYEIESFAPVVGIMA  231
              +V   V DA + GA++         +     PTV+  +TP+M++ + E F PV+ ++ 
Sbjct  317  LERVLKYVEDAKEEGAKLLTGGEAGLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIR  376

Query  232  VEREEQFMAIIEAAKYGLSSSIFSRNHYRSLDLAGTIKAGAVHINSMTVHDEPTLPHGGY  291
             + EE+ + I    +YGL++ +F+ +  R+L +A  ++AG V IN  T  D   LP GG+
Sbjct  377  FKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFGGF  436

Query  292  GDSGWGRFGARWGLEEFIQTKIV  314
              SG+GR G  +GLEE+ + K V
Sbjct  437  KQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.320    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00029399

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  68.5    4e-13


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 68.5 bits (168),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 51/222 (23%), Positives = 87/222 (39%), Gaps = 32/222 (14%)

Query  166  GIDIRLGARVV----DYDPVLGSITLKDGTSH---RGDLVVAADGIKSVARKVVLNGEDM  218
            G  +R G  V+    D D V   +  +        R   +V  DG +S  RK       +
Sbjct  114  GAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRK------TL  167

Query  219  PFIKPGFAAYRA-VVDVNQMRNDPEVSWILERPALNVWIG--DSRHVMTYTIGAGNAFNM  275
                 GF       +DV    + P++S  +ER  ++  I    SR  M     +      
Sbjct  168  GIEFEGFEGVPFGSLDVLF--DAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSAGRERY  225

Query  276  V------LSHRDTSDPATWDKQTALQDMKAEFQGWDPVLTKIIGMVEKTIKWPLMSGSLL  329
                       +  +  T ++    Q +++   G D  L +I+    K+I W  ++  + 
Sbjct  226  YVQVPWDEEVEERPEEFTDEE--LKQRLRSIV-GIDLALVEIL---WKSI-WG-VASRVA  277

Query  330  TRWTRGKLVILGDAAHAMLPYMSQGAAMAVEDGVALARSLSH  371
            TR+ +G++ + GDAAH   P   QG   A++D   LA  L+ 
Sbjct  278  TRYRKGRVFLAGDAAHIHPPTGGQGLNTAIQDAFNLAWKLAA  319



Lambda      K        H        a         alpha
   0.319    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00034403

Length=362


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00029401

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00029400

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  68.5    4e-13


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 68.5 bits (168),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 51/222 (23%), Positives = 87/222 (39%), Gaps = 32/222 (14%)

Query  166  GIDIRLGARVV----DYDPVLGSITLKDGTSH---RGDLVVAADGIKSVARKVVLNGEDM  218
            G  +R G  V+    D D V   +  +        R   +V  DG +S  RK       +
Sbjct  114  GAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRK------TL  167

Query  219  PFIKPGFAAYRA-VVDVNQMRNDPEVSWILERPALNVWIG--DSRHVMTYTIGAGNAFNM  275
                 GF       +DV    + P++S  +ER  ++  I    SR  M     +      
Sbjct  168  GIEFEGFEGVPFGSLDVLF--DAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSAGRERY  225

Query  276  V------LSHRDTSDPATWDKQTALQDMKAEFQGWDPVLTKIIGMVEKTIKWPLMSGSLL  329
                       +  +  T ++    Q +++   G D  L +I+    K+I W  ++  + 
Sbjct  226  YVQVPWDEEVEERPEEFTDEE--LKQRLRSIV-GIDLALVEIL---WKSI-WG-VASRVA  277

Query  330  TRWTRGKLVILGDAAHAMLPYMSQGAAMAVEDGVALARSLSH  371
            TR+ +G++ + GDAAH   P   QG   A++D   LA  L+ 
Sbjct  278  TRYRKGRVFLAGDAAHIHPPTGGQGLNTAIQDAFNLAWKLAA  319



Lambda      K        H        a         alpha
   0.319    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00034404

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00029402

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00034405

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462300 pfam07883, Cupin_2, Cupin domain. This family represen...  54.6    9e-11


>CDD:462300 pfam07883, Cupin_2, Cupin domain.  This family represents the 
conserved barrel domain of the 'cupin' superfamily ('cupa' 
is the Latin term for a small barrel).
Length=71

 Score = 54.6 bits (132),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 29/65 (45%), Gaps = 2/65 (3%)

Query  1   MPNETAPAHRHT-AFAMRYIIEGNGGFTAVHGRRIRMQKGDVILTPTWNYHDHGKDGSGP  59
            P E++P HRH       Y++EG G  T V G  + ++ GD +  P    H     G  P
Sbjct  6   PPGESSPPHRHPGEDEFFYVLEGEGELT-VDGEEVVLKAGDSVYFPAGVPHRFRNTGDEP  64

Query  60  MIWLD  64
              LD
Sbjct  65  ARLLD  69



Lambda      K        H        a         alpha
   0.320    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 277421980


Query= TCONS_00029405

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  68.5    4e-13


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 68.5 bits (168),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 51/222 (23%), Positives = 87/222 (39%), Gaps = 32/222 (14%)

Query  166  GIDIRLGARVV----DYDPVLGSITLKDGTSH---RGDLVVAADGIKSVARKVVLNGEDM  218
            G  +R G  V+    D D V   +  +        R   +V  DG +S  RK       +
Sbjct  114  GAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRK------TL  167

Query  219  PFIKPGFAAYRA-VVDVNQMRNDPEVSWILERPALNVWIG--DSRHVMTYTIGAGNAFNM  275
                 GF       +DV    + P++S  +ER  ++  I    SR  M     +      
Sbjct  168  GIEFEGFEGVPFGSLDVLF--DAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSAGRERY  225

Query  276  V------LSHRDTSDPATWDKQTALQDMKAEFQGWDPVLTKIIGMVEKTIKWPLMSGSLL  329
                       +  +  T ++    Q +++   G D  L +I+    K+I W  ++  + 
Sbjct  226  YVQVPWDEEVEERPEEFTDEE--LKQRLRSIV-GIDLALVEIL---WKSI-WG-VASRVA  277

Query  330  TRWTRGKLVILGDAAHAMLPYMSQGAAMAVEDGVALARSLSH  371
            TR+ +G++ + GDAAH   P   QG   A++D   LA  L+ 
Sbjct  278  TRYRKGRVFLAGDAAHIHPPTGGQGLNTAIQDAFNLAWKLAA  319



Lambda      K        H        a         alpha
   0.319    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00029404

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462300 pfam07883, Cupin_2, Cupin domain. This family represen...  54.6    9e-11


>CDD:462300 pfam07883, Cupin_2, Cupin domain.  This family represents the 
conserved barrel domain of the 'cupin' superfamily ('cupa' 
is the Latin term for a small barrel).
Length=71

 Score = 54.6 bits (132),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 29/65 (45%), Gaps = 2/65 (3%)

Query  1   MPNETAPAHRHT-AFAMRYIIEGNGGFTAVHGRRIRMQKGDVILTPTWNYHDHGKDGSGP  59
            P E++P HRH       Y++EG G  T V G  + ++ GD +  P    H     G  P
Sbjct  6   PPGESSPPHRHPGEDEFFYVLEGEGELT-VDGEEVVLKAGDSVYFPAGVPHRFRNTGDEP  64

Query  60  MIWLD  64
              LD
Sbjct  65  ARLLD  69



Lambda      K        H        a         alpha
   0.320    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 277421980


Query= TCONS_00034406

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462300 pfam07883, Cupin_2, Cupin domain. This family represen...  54.6    9e-11


>CDD:462300 pfam07883, Cupin_2, Cupin domain.  This family represents the 
conserved barrel domain of the 'cupin' superfamily ('cupa' 
is the Latin term for a small barrel).
Length=71

 Score = 54.6 bits (132),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 29/65 (45%), Gaps = 2/65 (3%)

Query  1   MPNETAPAHRHT-AFAMRYIIEGNGGFTAVHGRRIRMQKGDVILTPTWNYHDHGKDGSGP  59
            P E++P HRH       Y++EG G  T V G  + ++ GD +  P    H     G  P
Sbjct  6   PPGESSPPHRHPGEDEFFYVLEGEGELT-VDGEEVVLKAGDSVYFPAGVPHRFRNTGDEP  64

Query  60  MIWLD  64
              LD
Sbjct  65  ARLLD  69



Lambda      K        H        a         alpha
   0.320    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 277421980


Query= TCONS_00029406

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  67.4    1e-12


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 67.4 bits (165),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 51/222 (23%), Positives = 87/222 (39%), Gaps = 32/222 (14%)

Query  156  GIDIRLGARVV----DYDPVLGSITLKDGTSH---RGDLVVAADGIKSVARKVVLNGEDM  208
            G  +R G  V+    D D V   +  +        R   +V  DG +S  RK       +
Sbjct  114  GAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRK------TL  167

Query  209  PFIKPGFAAYRA-VVDVNQMRNDPEVSWILERPALNVWIG--DSRHVMTYTIGAGNAFNM  265
                 GF       +DV    + P++S  +ER  ++  I    SR  M     +      
Sbjct  168  GIEFEGFEGVPFGSLDVLF--DAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSAGRERY  225

Query  266  V------LSHRDTSDPATWDKQTALQDMKAEFQGWDPVLTKIIGMVEKTIKWPLMSGSLL  319
                       +  +  T ++    Q +++   G D  L +I+    K+I W  ++  + 
Sbjct  226  YVQVPWDEEVEERPEEFTDEE--LKQRLRSIV-GIDLALVEIL---WKSI-WG-VASRVA  277

Query  320  TRWTRGKLVILGDAAHAMLPYMSQGRTMAVEDGVALARSLSH  361
            TR+ +G++ + GDAAH   P   QG   A++D   LA  L+ 
Sbjct  278  TRYRKGRVFLAGDAAHIHPPTGGQGLNTAIQDAFNLAWKLAA  319



Lambda      K        H        a         alpha
   0.319    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00029408

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00029409

Length=255


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 277421980


Query= TCONS_00029407

Length=362


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00029410

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00029411

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396193 pfam01494, FAD_binding_3, FAD binding domain. This dom...  68.1    6e-13


>CDD:396193 pfam01494, FAD_binding_3, FAD binding domain.  This domain is 
involved in FAD binding in a number of enzymes.
Length=348

 Score = 68.1 bits (167),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 51/222 (23%), Positives = 87/222 (39%), Gaps = 32/222 (14%)

Query  156  GIDIRLGARVV----DYDPVLGSITLKDGTSH---RGDLVVAADGIKSVARKVVLNGEDM  208
            G  +R G  V+    D D V   +  +        R   +V  DG +S  RK       +
Sbjct  114  GAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRK------TL  167

Query  209  PFIKPGFAAYRA-VVDVNQMRNDPEVSWILERPALNVWIG--DSRHVMTYTIGAGNAFNM  265
                 GF       +DV    + P++S  +ER  ++  I    SR  M     +      
Sbjct  168  GIEFEGFEGVPFGSLDVLF--DAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSAGRERY  225

Query  266  V------LSHRDTSDPATWDKQTALQDMKAEFQGWDPVLTKIIGMVEKTIKWPLMSGSLL  319
                       +  +  T ++    Q +++   G D  L +I+    K+I W  ++  + 
Sbjct  226  YVQVPWDEEVEERPEEFTDEE--LKQRLRSIV-GIDLALVEIL---WKSI-WG-VASRVA  277

Query  320  TRWTRGKLVILGDAAHAMLPYMSQGAAMAVEDGVALARSLSH  361
            TR+ +G++ + GDAAH   P   QG   A++D   LA  L+ 
Sbjct  278  TRYRKGRVFLAGDAAHIHPPTGGQGLNTAIQDAFNLAWKLAA  319



Lambda      K        H        a         alpha
   0.319    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00034407

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0731    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00034409

Length=158
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  118     1e-32


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 118 bits (298),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 50/125 (40%), Positives = 66/125 (53%), Gaps = 24/125 (19%)

Query  1    MILGLRAVVAPIAAGNVAILKACALRQADAEREIVSGLNISQGSELSPQTHYLVASLFQE  60
            ++L    +   +AAGN  +LK                      SEL+P T  L+A LF+E
Sbjct  140  LLLPAWKIAPALAAGNTVVLKP---------------------SELTPLTALLLAELFEE  178

Query  61   AGFPPGVLNFLLYRPQDAPDIFDVLINHPAIKKCNFTGSTQVGRIIASQAALALKPVLLE  120
            AG P GVLN +        ++ + L+ HP ++K +FTGST VGR IA  AA  LK V LE
Sbjct  179  AGLPAGVLNVV---TGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLE  235

Query  121  LGGKN  125
            LGGKN
Sbjct  236  LGGKN  240



Lambda      K        H        a         alpha
   0.322    0.139    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00034411

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00034412

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00029416

Length=222


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00029415

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00029414

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00034413

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00034414

Length=222


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00029417

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00034415

Length=222


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00034416

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00029418

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.519    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00029419

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.128    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00029420

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00029423

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         271     5e-85


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 271 bits (694),  Expect = 5e-85, Method: Composition-based stats.
 Identities = 117/403 (29%), Positives = 188/403 (47%), Gaps = 14/403 (3%)

Query  172  AVIGCWTTAPLNRWFGRRGCIFISCFISFASSFWMAAAH---TWWNLLLGRFLLGFAVGA  228
              IG      L   FGR+  + I+  +    +    AA    + + L++GR L+G  VG 
Sbjct  59   CFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGG  118

Query  229  KSTTTPVYGAECSPANIRGALVMMWQMWTAFGIMLGYIASVAFMDVTHPTIPGFNWRLML  288
             S   P+Y +E +P  +RGAL  ++Q+   FGI+L YI  +     ++       WR+ L
Sbjct  119  ASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSD----GWRIPL  174

Query  289  GSTAIPPFFVCIQVYFCPESPRWYMMRNRYHDAYKALCKFRPSTFQAARDLYYIHAALKV  348
            G   +P   + I + F PESPRW + + R  +A + L K R        D         +
Sbjct  175  GLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGV---PDVDRELDEIKDSL  231

Query  349  EEKLREGKHLFREMFTIPRNRRAAQSSFFVMFMQQFCGVNAIMYYSSSMFREAGFDTRMA  408
            E      K  ++E+F+    R+       +   QQ  G+NAI YYS+++F   G     +
Sbjct  232  EAGQEAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSD--S  289

Query  409  LITSLGCGITNWIFALPAVYTIDTFGRRNLLLTTFPLMCIFLLFTG--FSFYIPDQTSRT  466
             + ++  G+ N++F   A++ +D FGRR LLL     M I  +  G      +       
Sbjct  290  FLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAG  349

Query  467  ACVATGIYLFMIVYSPGEGPVPFTYSAEAFPLYIRDIGMSFATATTWGFNFIVSLTWPSL  526
                  I LF+  ++ G GPVP+   +E FPL +R   M+ ATA  W  NF++   +P +
Sbjct  350  IVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPII  409

Query  527  NKSFTPTGAFGWYAAWNFFGWIFCYFCLPETKALSLEELDQVF  569
              +      F  +A       IF +F +PETK  +LEE+D++F
Sbjct  410  TDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.327    0.137    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00034417

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         86.2    2e-19


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 86.2 bits (214),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 60/126 (48%), Gaps = 7/126 (6%)

Query  172  AVIGCWTTAPLNRWFGRRGCIFISCFISFASSFWMAAAH---TWWNLLLGRFLLGFAVGA  228
              IG      L   FGR+  + I+  +    +    AA    + + L++GR L+G  VG 
Sbjct  59   CFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGG  118

Query  229  KSTTTPVYGAECSPANIRGALVMMWQMWTAFGIMLGYIASVAFMDVTHPTIPGFNWRLML  288
             S   P+Y +E +P  +RGAL  ++Q+   FGI+L YI  +     ++       WR+ L
Sbjct  119  ASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSD----GWRIPL  174

Query  289  GSTAIP  294
            G   +P
Sbjct  175  GLQLVP  180



Lambda      K        H        a         alpha
   0.322    0.133    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00034418

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         129     1e-33


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 129 bits (326),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 58/215 (27%), Positives = 94/215 (44%), Gaps = 10/215 (5%)

Query  205  AVIGCWTTAPLNRWFGRRGCIFISCFISFASSFWMAAAH---TWWNLLLGRFLLGFAVGA  261
              IG      L   FGR+  + I+  +    +    AA    + + L++GR L+G  VG 
Sbjct  59   CFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGG  118

Query  262  KSTTTPVYGAECSPANIRGALVMMWQMWTAFGIMLGYIASVAFMDVTHPTIPGFNWRLML  321
             S   P+Y +E +P  +RGAL  ++Q+   FGI+L YI  +     ++       WR+ L
Sbjct  119  ASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSD----GWRIPL  174

Query  322  GSTAIPPFFVCIQVYFCPESPRWYMMRNRYHDAYKALCKFRPSTFQAARDLYYIHAALKV  381
            G   +P   + I + F PESPRW + + R  +A + L K R        D         +
Sbjct  175  GLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGV---PDVDRELDEIKDSL  231

Query  382  EEKLREGKHLFREMFTIPRNRRAAQSSFFVMFMQQ  416
            E      K  ++E+F+    R+       +   QQ
Sbjct  232  EAGQEAEKASWKELFSTKTRRQRLLIGVMLQIFQQ  266



Lambda      K        H        a         alpha
   0.324    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00034419

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         161     5e-47


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 161 bits (410),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 72/259 (28%), Positives = 118/259 (46%), Gaps = 7/259 (3%)

Query  1    MMRNRYHDAYKALCKFRPSTFQAARDLYYIHAALKVEEKLREGKHLFREMFTIPRNRRAA  60
            + + R  +A + L K R        D         +E      K  ++E+F+    R+  
Sbjct  199  VEKGRLEEAREVLAKLRGV---PDVDRELDEIKDSLEAGQEAEKASWKELFSTKTRRQRL  255

Query  61   QSSFFVMFMQQFCGVNAIMYYSSSMFREAGFDTRMALITSLGCGITNWIFALPAVYTIDT  120
                 +   QQ  G+NAI YYS+++F   G     + + ++  G+ N++F   A++ +D 
Sbjct  256  LIGVMLQIFQQLTGINAIFYYSTTIFENLGLSD--SFLVTIIVGVVNFVFTFIAIFLVDR  313

Query  121  FGRRNLLLTTFPLMCIFLLFTG--FSFYIPDQTSRTACVATGIYLFMIVYSPGEGPVPFT  178
            FGRR LLL     M I  +  G      +             I LF+  ++ G GPVP+ 
Sbjct  314  FGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVPWV  373

Query  179  YSAEAFPLYIRDIGMSFATATTWGFNFIVSLTWPSLNKSFTPTGAFGWYAAWNFFGWIFC  238
              +E FPL +R   M+ ATA  W  NF++   +P +  +      F  +A       IF 
Sbjct  374  IVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFV  433

Query  239  YFCLPETKALSLEELDQVF  257
            +F +PETK  +LEE+D++F
Sbjct  434  FFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.330    0.141    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00029421

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         212     2e-63


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 212 bits (541),  Expect = 2e-63, Method: Composition-based stats.
 Identities = 92/330 (28%), Positives = 149/330 (45%), Gaps = 14/330 (4%)

Query  172  AVIGCWTTAPLNRWFGRRGCIFISCFISFASSFWMAAAH---TWWNLLLGRFLLGFAVGA  228
              IG      L   FGR+  + I+  +    +    AA    + + L++GR L+G  VG 
Sbjct  59   CFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGG  118

Query  229  KSTTTPVYGAECSPANIRGALVMMWQMWTAFGIMLGYIASVAFMDVTHPTIPGFNWRLML  288
             S   P+Y +E +P  +RGAL  ++Q+   FGI+L YI  +     ++       WR+ L
Sbjct  119  ASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSD----GWRIPL  174

Query  289  GSTAIPPFFVCIQVYFCPESPRWYMMRNRYHDAYKALCKFRPSTFQAARDLYYIHAALKV  348
            G   +P   + I + F PESPRW + + R  +A + L K R        D         +
Sbjct  175  GLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGV---PDVDRELDEIKDSL  231

Query  349  EEKLREGKHLFREMFTIPRNRRAAQSSFFVMFMQQFCGVNAIMYYSSSMFREAGFDTRMA  408
            E      K  ++E+F+    R+       +   QQ  G+NAI YYS+++F   G     +
Sbjct  232  EAGQEAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSD--S  289

Query  409  LITSLGCGITNWIFALPAVYTIDTFGRRNLLLTTFPLMCIFLLFTG--FSFYIPDQTSRT  466
             + ++  G+ N++F   A++ +D FGRR LLL     M I  +  G      +       
Sbjct  290  FLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAG  349

Query  467  ACVATGIYLFMIVYSPGEGPVPFTYSAEAF  496
                  I LF+  ++ G GPVP+   +E F
Sbjct  350  IVAIVFIALFIAFFAMGWGPVPWVIVSELF  379



Lambda      K        H        a         alpha
   0.327    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00029422

Length=412
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         199     6e-60


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 199 bits (508),  Expect = 6e-60, Method: Composition-based stats.
 Identities = 92/330 (28%), Positives = 149/330 (45%), Gaps = 14/330 (4%)

Query  41   AVIGCWTTAPLNRWFGRRGCIFISCFISFASSFWMAAAH---TWWNLLLGRFLLGFAVGA  97
              IG      L   FGR+  + I+  +    +    AA    + + L++GR L+G  VG 
Sbjct  59   CFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGG  118

Query  98   KSTTTPVYGAECSPANIRGALVMMWQMWTAFGIMLGYIASVAFMDVTHPTIPGFNWRLML  157
             S   P+Y +E +P  +RGAL  ++Q+   FGI+L YI  +     ++       WR+ L
Sbjct  119  ASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSD----GWRIPL  174

Query  158  GSTAIPPFFVCIQVYFCPESPRWYMMRNRYHDAYKALCKFRPSTFQAARDLYYIHAALKV  217
            G   +P   + I + F PESPRW + + R  +A + L K R        D         +
Sbjct  175  GLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGV---PDVDRELDEIKDSL  231

Query  218  EEKLREGKHLFREMFTIPRNRRAAQSSFFVMFMQQFCGVNAIMYYSSSMFREAGFDTRMA  277
            E      K  ++E+F+    R+       +   QQ  G+NAI YYS+++F   G     +
Sbjct  232  EAGQEAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSD--S  289

Query  278  LITSLGCGITNWIFALPAVYTIDTFGRRNLLLTTFPLMCIFLLFTG--FSFYIPDQTSRT  335
             + ++  G+ N++F   A++ +D FGRR LLL     M I  +  G      +       
Sbjct  290  FLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAG  349

Query  336  ACVATGIYLFMIVYSPGEGPVPFTYSAEAF  365
                  I LF+  ++ G GPVP+   +E F
Sbjct  350  IVAIVFIALFIAFFAMGWGPVPWVIVSELF  379



Lambda      K        H        a         alpha
   0.331    0.140    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 501729466


Query= TCONS_00034421

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         214     4e-66


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 214 bits (548),  Expect = 4e-66, Method: Composition-based stats.
 Identities = 102/351 (29%), Positives = 161/351 (46%), Gaps = 14/351 (4%)

Query  41   AVIGCWTTAPLNRWFGRRGCIFISCFISFASSFWMAAAH---TWWNLLLGRFLLGFAVGA  97
              IG      L   FGR+  + I+  +    +    AA    + + L++GR L+G  VG 
Sbjct  59   CFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGG  118

Query  98   KSTTTPVYGAECSPANIRGALVMMWQMWTAFGIMLGYIASVAFMDVTHPTIPGFNWRLML  157
             S   P+Y +E +P  +RGAL  ++Q+   FGI+L YI  +     ++       WR+ L
Sbjct  119  ASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSD----GWRIPL  174

Query  158  GSTAIPPFFVCIQVYFCPESPRWYMMRNRYHDAYKALCKFRPSTFQAARDLYYIHAALKV  217
            G   +P   + I + F PESPRW + + R  +A + L K R        D         +
Sbjct  175  GLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGV---PDVDRELDEIKDSL  231

Query  218  EEKLREGKHLFREMFTIPRNRRAAQSSFFVMFMQQFCGVNAIMYYSSSMFREAGFDTRMA  277
            E      K  ++E+F+    R+       +   QQ  G+NAI YYS+++F   G     +
Sbjct  232  EAGQEAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSD--S  289

Query  278  LITSLGCGITNWIFALPAVYTIDTFGRRNLLLTTFPLMCIFLLFTG--FSFYIPDQTSRT  335
             + ++  G+ N++F   A++ +D FGRR LLL     M I  +  G      +       
Sbjct  290  FLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAG  349

Query  336  ACVATGIYLFMIVYSPGEGPVPFTYSAEAFPLYIRDIGMSFATATTWGFNF  386
                  I LF+  ++ G GPVP+   +E FPL +R   M+ ATA  W  NF
Sbjct  350  IVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANF  400



Lambda      K        H        a         alpha
   0.331    0.140    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00034420

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         128     2e-33


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 128 bits (323),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 65/274 (24%), Positives = 111/274 (41%), Gaps = 21/274 (8%)

Query  123  MTILCAGSAIVQGMDQTAVNGAQEFY--FAEFNV--------TDTWMQGLLNGAPYLCSA  172
            + ++ A    + G D   +         F  F +          + + GL+     +   
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSV-GC  59

Query  173  VIGCWTTAPLNRWFGRRGCIFISCFISFASSFWMAAAH---TWWNLLLGRFLLGFAVGAK  229
             IG      L   FGR+  + I+  +    +    AA    + + L++GR L+G  VG  
Sbjct  60   FIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGA  119

Query  230  STTTPVYGAECSPANIRGALVMMWQMWTAFGIMLGYIASVAFMDVTHPTIPGFNWRLMLG  289
            S   P+Y +E +P  +RGAL  ++Q+   FGI+L YI  +     ++       WR+ LG
Sbjct  120  SVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSD----GWRIPLG  175

Query  290  STAIPPFFVCIQVYFCPESPRWYMMRNRYHDAYKALCKFRPSTFQAARDLYYIHAALKVE  349
               +P   + I + F PESPRW + + R  +A + L K R        D         +E
Sbjct  176  LQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGV---PDVDRELDEIKDSLE  232

Query  350  EKLREGKHLFREMFTIPRNRRAAQSSFFVMFMQQ  383
                  K  ++E+F+    R+       +   QQ
Sbjct  233  AGQEAEKASWKELFSTKTRRQRLLIGVMLQIFQQ  266



Lambda      K        H        a         alpha
   0.325    0.134    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00029424

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         199     5e-60


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 199 bits (509),  Expect = 5e-60, Method: Composition-based stats.
 Identities = 92/330 (28%), Positives = 149/330 (45%), Gaps = 14/330 (4%)

Query  37   AVIGCWTTAPLNRWFGRRGCIFISCFISFASSFWMAAAH---TWWNLLLGRFLLGFAVGA  93
              IG      L   FGR+  + I+  +    +    AA    + + L++GR L+G  VG 
Sbjct  59   CFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGG  118

Query  94   KSTTTPVYGAECSPANIRGALVMMWQMWTAFGIMLGYIASVAFMDVTHPTIPGFNWRLML  153
             S   P+Y +E +P  +RGAL  ++Q+   FGI+L YI  +     ++       WR+ L
Sbjct  119  ASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSD----GWRIPL  174

Query  154  GSTAIPPFFVCIQVYFCPESPRWYMMRNRYHDAYKALCKFRPSTFQAARDLYYIHAALKV  213
            G   +P   + I + F PESPRW + + R  +A + L K R        D         +
Sbjct  175  GLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGV---PDVDRELDEIKDSL  231

Query  214  EEKLREGKHLFREMFTIPRNRRAAQSSFFVMFMQQFCGVNAIMYYSSSMFREAGFDTRMA  273
            E      K  ++E+F+    R+       +   QQ  G+NAI YYS+++F   G     +
Sbjct  232  EAGQEAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSD--S  289

Query  274  LITSLGCGITNWIFALPAVYTIDTFGRRNLLLTTFPLMCIFLLFTG--FSFYIPDQTSRT  331
             + ++  G+ N++F   A++ +D FGRR LLL     M I  +  G      +       
Sbjct  290  FLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAG  349

Query  332  ACVATGIYLFMIVYSPGEGPVPFTYSAEAF  361
                  I LF+  ++ G GPVP+   +E F
Sbjct  350  IVAIVFIALFIAFFAMGWGPVPWVIVSELF  379



Lambda      K        H        a         alpha
   0.331    0.141    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00029425

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         104     1e-26


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 104 bits (261),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 7/186 (4%)

Query  1    MMRNRYHDAYKALCKFRPSTFQAARDLYYIHAALKVEEKLREGKHLFREMFTIPRNRRAA  60
            + + R  +A + L K R        D         +E      K  ++E+F+    R+  
Sbjct  199  VEKGRLEEAREVLAKLRGV---PDVDRELDEIKDSLEAGQEAEKASWKELFSTKTRRQRL  255

Query  61   QSSFFVMFMQQFCGVNAIMYYSSSMFREAGFDTRMALITSLGCGITNWIFALPAVYTIDT  120
                 +   QQ  G+NAI YYS+++F   G     + + ++  G+ N++F   A++ +D 
Sbjct  256  LIGVMLQIFQQLTGINAIFYYSTTIFENLGLSD--SFLVTIIVGVVNFVFTFIAIFLVDR  313

Query  121  FGRRNLLLTTFPLMCIFLLFTG--FSFYIPDQTSRTACVATGIYLFMIVYSPGEGPVPFT  178
            FGRR LLL     M I  +  G      +             I LF+  ++ G GPVP+ 
Sbjct  314  FGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVPWV  373

Query  179  YSAEAF  184
              +E F
Sbjct  374  IVSELF  379



Lambda      K        H        a         alpha
   0.332    0.142    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00029427

Length=640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         273     2e-85


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 273 bits (700),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 117/403 (29%), Positives = 188/403 (47%), Gaps = 14/403 (3%)

Query  205  AVIGCWTTAPLNRWFGRRGCIFISCFISFASSFWMAAAH---TWWNLLLGRFLLGFAVGA  261
              IG      L   FGR+  + I+  +    +    AA    + + L++GR L+G  VG 
Sbjct  59   CFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGG  118

Query  262  KSTTTPVYGAECSPANIRGALVMMWQMWTAFGIMLGYIASVAFMDVTHPTIPGFNWRLML  321
             S   P+Y +E +P  +RGAL  ++Q+   FGI+L YI  +     ++       WR+ L
Sbjct  119  ASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSD----GWRIPL  174

Query  322  GSTAIPPFFVCIQVYFCPESPRWYMMRNRYHDAYKALCKFRPSTFQAARDLYYIHAALKV  381
            G   +P   + I + F PESPRW + + R  +A + L K R        D         +
Sbjct  175  GLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGV---PDVDRELDEIKDSL  231

Query  382  EEKLREGKHLFREMFTIPRNRRAAQSSFFVMFMQQFCGVNAIMYYSSSMFREAGFDTRMA  441
            E      K  ++E+F+    R+       +   QQ  G+NAI YYS+++F   G     +
Sbjct  232  EAGQEAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSD--S  289

Query  442  LITSLGCGITNWIFALPAVYTIDTFGRRNLLLTTFPLMCIFLLFTG--FSFYIPDQTSRT  499
             + ++  G+ N++F   A++ +D FGRR LLL     M I  +  G      +       
Sbjct  290  FLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAG  349

Query  500  ACVATGIYLFMIVYSPGEGPVPFTYSAEAFPLYIRDIGMSFATATTWGFNFIVSLTWPSL  559
                  I LF+  ++ G GPVP+   +E FPL +R   M+ ATA  W  NF++   +P +
Sbjct  350  IVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPII  409

Query  560  NKSFTPTGAFGWYAAWNFFGWIFCYFCLPETKALSLEELDQVF  602
              +      F  +A       IF +F +PETK  +LEE+D++F
Sbjct  410  TDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.326    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 806710130


Query= TCONS_00029426

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         214     8e-64


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 214 bits (547),  Expect = 8e-64, Method: Composition-based stats.
 Identities = 92/330 (28%), Positives = 149/330 (45%), Gaps = 14/330 (4%)

Query  205  AVIGCWTTAPLNRWFGRRGCIFISCFISFASSFWMAAAH---TWWNLLLGRFLLGFAVGA  261
              IG      L   FGR+  + I+  +    +    AA    + + L++GR L+G  VG 
Sbjct  59   CFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGG  118

Query  262  KSTTTPVYGAECSPANIRGALVMMWQMWTAFGIMLGYIASVAFMDVTHPTIPGFNWRLML  321
             S   P+Y +E +P  +RGAL  ++Q+   FGI+L YI  +     ++       WR+ L
Sbjct  119  ASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSD----GWRIPL  174

Query  322  GSTAIPPFFVCIQVYFCPESPRWYMMRNRYHDAYKALCKFRPSTFQAARDLYYIHAALKV  381
            G   +P   + I + F PESPRW + + R  +A + L K R        D         +
Sbjct  175  GLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGV---PDVDRELDEIKDSL  231

Query  382  EEKLREGKHLFREMFTIPRNRRAAQSSFFVMFMQQFCGVNAIMYYSSSMFREAGFDTRMA  441
            E      K  ++E+F+    R+       +   QQ  G+NAI YYS+++F   G     +
Sbjct  232  EAGQEAEKASWKELFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSD--S  289

Query  442  LITSLGCGITNWIFALPAVYTIDTFGRRNLLLTTFPLMCIFLLFTG--FSFYIPDQTSRT  499
             + ++  G+ N++F   A++ +D FGRR LLL     M I  +  G      +       
Sbjct  290  FLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAG  349

Query  500  ACVATGIYLFMIVYSPGEGPVPFTYSAEAF  529
                  I LF+  ++ G GPVP+   +E F
Sbjct  350  IVAIVFIALFIAFFAMGWGPVPWVIVSELF  379



Lambda      K        H        a         alpha
   0.326    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 723303152


Query= TCONS_00029428

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00029430

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  112     3e-28


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 112 bits (283),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 91/397 (23%), Positives = 165/397 (42%), Gaps = 27/397 (7%)

Query  4    ETVSLGILSLPAVVAALGLVPAIILLVALGLMSTYTGYTIGQFKWAYPHIH----SMGDA  59
              +  G+LSLP     LG +P +ILL+ +GL+S YT + + +     P       S GD 
Sbjct  15   AIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKEVPVTGKRNKSYGDL  74

Query  60   GEVIMGRFGRELFGTGQLLLVVFIMASHILTFTVAMNSI-----TDHGTCSIVFGVVGLV  114
            G  ++G  GR L     LL +  +  S+++     + +I            + F ++  +
Sbjct  75   GYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIFGL  134

Query  115  ISFVLCLPRTLAKVSFLSVASFISVFSAVLIVMIAV---GVQRPWHGGLNATV-DTNLYK  170
            I   L     L+ +S LS+ + +S    ++I++++V    V      G   +  +  L  
Sbjct  135  IFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAG  194

Query  171  AFLAVCNIVFSFSGHVAFFGFMAELRNPRDYP---KSLFLLQGIDTCLYIIAAVVIYCYA  227
             FLA+  IVF+F GH        E++NP  +    K L     I T LYI+  +V Y   
Sbjct  195  TFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLAF  254

Query  228  GDDVTSPALGS-----ASTIVKKVAYGIALPTIIIGGVVNGHVACKYI---YVRMWRHSD  279
            GD+V    L +         +  +   +    +I+   +      + +     R      
Sbjct  255  GDNVKGNILLNLPKSAWLIDIANLLLVLH---VILSFPLQLFPIRQIVENLLFRKEAPFG  311

Query  280  RMHKRDLVATGSWVLIGLATWIVAWIIAEAIPVFNNLLSLVASLFASWFTYGFSALFWLY  339
               K +  +    V+I     ++ ++IA ++P F +LLSLV +   +  ++    LF L 
Sbjct  312  ASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFILPPLFHLK  371

Query  340  LNKGRFFSTPMKTALTILNVVIMGVACCICGLGLYVS  376
            L K +  S        IL+V+ + +   +   G+   
Sbjct  372  LKKTKKKSQEKLWKPDILDVICIVIGLLLMAYGVAGL  408



Lambda      K        H        a         alpha
   0.329    0.141    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00029429

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  104     2e-25


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 104 bits (262),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 86/384 (22%), Positives = 155/384 (40%), Gaps = 33/384 (9%)

Query  4    ETVSLGILSLPAVVAALGLVPAIILLVALGLMSTYTGYTIGQFKWAYPHIH----SMGDA  59
              +  G+LSLP     LG +P +ILL+ +GL+S YT + + +     P       S GD 
Sbjct  15   AIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKEVPVTGKRNKSYGDL  74

Query  60   GEVIMGRFGRELFGTGQLLLVVFIMASHILTFTVAMNSI-----TDHGTCSIVFGVVGLV  114
            G  ++G  GR L     LL +  +  S+++     + +I            + F ++  +
Sbjct  75   GYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFIIIFGL  134

Query  115  ISFVLCLPRTLAKVSFLSVASFISVFSAVLIVMIAV---GVQRPWHGGLNATV-DTNLYK  170
            I   L     L+ +S LS+ + +S    ++I++++V    V      G   +  +  L  
Sbjct  135  IFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAG  194

Query  171  AFLAVCNIVFSFSGHVAFFGFMAELRNPRDYP---KSLFLLQGIDTCLYIIAAVVIYCYA  227
             FLA+  IVF+F GH        E++NP  +    K L     I T LYI+  +V Y   
Sbjct  195  TFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLAF  254

Query  228  GDDVTSPALGS-----ASTIVKKVAYGIALPTIIIGGVVNGHVACKYI---YVRMWRHSD  279
            GD+V    L +         +  +   +    +I+   +      + +     R      
Sbjct  255  GDNVKGNILLNLPKSAWLIDIANLLLVLH---VILSFPLQLFPIRQIVENLLFRKEAPFG  311

Query  280  RMHKRDLVATGSWVLIGLATWIVAWIIAEAIPVFNNLLSLVREVLVVICTMIWERVLIAP  339
               K +  +    V+I     ++ ++IA ++P F +LLSLV        + I       P
Sbjct  312  ASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFIL------P  365

Query  340  SVTAFRQPGTPDQPTEHLFPLALF  363
             +   +   T  +  E L+   + 
Sbjct  366  PLFHLKLKKTKKKSQEKLWKPDIL  389



Lambda      K        H        a         alpha
   0.329    0.142    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00034422

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  62.7    6e-12


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 62.7 bits (153),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 44/211 (21%), Positives = 79/211 (37%), Gaps = 24/211 (11%)

Query  62   WCVFSAVLIVMIAVGV---------QRPWHGGLNATV-DTNLYKAFLAVCNIVFSFSGHV  111
              + +AV  +   V +               G   +  +  L   FLA+  IVF+F GH 
Sbjct  151  LSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAGTFLAIGIIVFAFEGHA  210

Query  112  AFFGFMAELRNPRDYP---KSLFLLQGIDTCLYIIAAVVIYCYAGDDVTSPALGS-----  163
                   E++NP  +    K L     I T LYI+  +V Y   GD+V    L +     
Sbjct  211  VLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLAFGDNVKGNILLNLPKSA  270

Query  164  ASTIVKKVAYGIALPTIIIGGVVNGHVACKYI---YVRMWRHSDRMHKRDLVATGSWVLI  220
                +  +   +    +I+   +      + +     R         K +  +    V+I
Sbjct  271  WLIDIANLLLVLH---VILSFPLQLFPIRQIVENLLFRKEAPFGASGKNNPKSKLLRVVI  327

Query  221  GLATWIVAWIIAEAIPVFNNLLSLVASLFAS  251
                 ++ ++IA ++P F +LLSLV +   +
Sbjct  328  RSGLVVITYLIAISVPFFGDLLSLVGATSCA  358



Lambda      K        H        a         alpha
   0.324    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00029431

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  132     6e-35


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 132 bits (335),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 96/411 (23%), Positives = 173/411 (42%), Gaps = 27/411 (7%)

Query  58   KTLSWWQCGFLMVAETVSLGILSLPAVVAALGLVPAIILLVALGLMSTYTGYTIGQFKWA  117
             T+S WQ  F ++   +  G+LSLP     LG +P +ILL+ +GL+S YT + + +    
Sbjct  1    GTISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKE  60

Query  118  YPHIH----SMGDAGEVIMGRFGRELFGTGQLLLVVFIMASHILTFTVAMNSI-----TD  168
             P       S GD G  ++G  GR L     LL +  +  S+++     + +I       
Sbjct  61   VPVTGKRNKSYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDT  120

Query  169  HGTCSIVFGVVGLVISFVLCLPRTLAKVSFLSVASFISVFSAVLIVMIAV---GVQRPWH  225
                 + F ++  +I   L     L+ +S LS+ + +S    ++I++++V    V     
Sbjct  121  CPISLVYFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQG  180

Query  226  GGLNATV-DTNLYKAFLAVCNIVFSFSGHVAFFGFMAELRNPRDYP---KSLFLLQGIDT  281
             G   +  +  L   FLA+  IVF+F GH        E++NP  +    K L     I T
Sbjct  181  VGHLGSKTNIKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIAT  240

Query  282  CLYIIAAVVIYCYAGDDVTSPALGS-----ASTIVKKVAYGIALPTIIIGGVVNGHVACK  336
             LYI+  +V Y   GD+V    L +         +  +   +    +I+   +      +
Sbjct  241  VLYILIGLVGYLAFGDNVKGNILLNLPKSAWLIDIANLLLVLH---VILSFPLQLFPIRQ  297

Query  337  YI---YVRMWRHSDRMHKRDLVATGSWVLIGLATWIVAWIIAEAIPVFNNLLSLVASLFA  393
             +     R         K +  +    V+I     ++ ++IA ++P F +LLSLV +   
Sbjct  298  IVENLLFRKEAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSC  357

Query  394  SWFTYGFSALFWLYLNKGRFFSTPMKTALTILNVVIMGVACCICGLGLYVS  444
            +  ++    LF L L K +  S        IL+V+ + +   +   G+   
Sbjct  358  APLSFILPPLFHLKLKKTKKKSQEKLWKPDILDVICIVIGLLLMAYGVAGL  408



Lambda      K        H        a         alpha
   0.327    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00029432

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  62.7    2e-11


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 62.7 bits (153),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 99/275 (36%), Gaps = 43/275 (16%)

Query  62   WCVFSAVLIVMIAVGV---------QRPWHGGLNATV-DTNLYKAFLAVCNIVFSFCRLF  111
              + +AV  +   V +               G   +  +  L   FLA+  IVF+F    
Sbjct  151  LSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAGTFLAIGIIVFAF----  206

Query  112  LHFSSFMDRTNKTAGHVAFFGFMAELRNPRDYP---KSLFLLQGIDTCLYIIAAVVIYCY  168
                          GH        E++NP  +    K L     I T LYI+  +V Y  
Sbjct  207  -------------EGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLA  253

Query  169  AGDDVTSPALGS-----ASTIVKKVAYGIALPTIIIGGVVNGHVACKYI---YVRMWRHS  220
             GD+V    L +         +  +   +    +I+   +      + +     R     
Sbjct  254  FGDNVKGNILLNLPKSAWLIDIANLLLVLH---VILSFPLQLFPIRQIVENLLFRKEAPF  310

Query  221  DRMHKRDLVATGSWVLIGLATWIVAWIIAEAIPVFNNLLSLVASLFASWFTYGFSALFWL  280
                K +  +    V+I     ++ ++IA ++P F +LLSLV +   +  ++    LF L
Sbjct  311  GASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFILPPLFHL  370

Query  281  YLNKGRFFSTPMKTALTILNV--VIMGVACCICGL  313
             L K +  S        IL+V  +++G+     G+
Sbjct  371  KLKKTKKKSQEKLWKPDILDVICIVIGLLLMAYGV  405



Lambda      K        H        a         alpha
   0.326    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00034424

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  115     4e-29


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 115 bits (291),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 89/377 (24%), Positives = 155/377 (41%), Gaps = 44/377 (12%)

Query  58   KTLSWWQCGFLMVAETVSLGILSLPAVVAALGLVPAIILLVALGLMSTYTGYTIGQFKWA  117
             T+S WQ  F ++   +  G+LSLP     LG +P +ILL+ +GL+S YT + + +    
Sbjct  1    GTISAWQAVFNLINAIIGAGVLSLPYAFKQLGWIPGLILLLIVGLISLYTAHLLVRCSKE  60

Query  118  YPHIH----SMGDAGEVIMGRFGRELFGTGQLLLVVFIMASHILTFTVAMNSI-----TD  168
             P       S GD G  ++G  GR L     LL +  +  S+++     + +I       
Sbjct  61   VPVTGKRNKSYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDT  120

Query  169  HGTCSIVFGVVGLVISFVLCLPRTLAKVSFLSVASFISVFSAVLIVMIAV---GVQRPWH  225
                 + F ++  +I   L     L+ +S LS+ + +S    ++I++++V    V     
Sbjct  121  CPISLVYFIIIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQG  180

Query  226  GGLNATV-DTNLYKAFLAVCNIVFSFCRLFLHFSSFMDRTNKTAGHVAFFGFMAELRNPR  284
             G   +  +  L   FLA+  IVF+F                  GH        E++NP 
Sbjct  181  VGHLGSKTNIKLAGTFLAIGIIVFAF-----------------EGHAVLLPIQNEMKNPS  223

Query  285  DYP---KSLFLLQGIDTCLYIIAAVVIYCYAGDDVTSPALGS-----ASTIVKKVAYGIA  336
             +    K L     I T LYI+  +V Y   GD+V    L +         +  +   + 
Sbjct  224  KFKAMTKILLTAIIIATVLYILIGLVGYLAFGDNVKGNILLNLPKSAWLIDIANLLLVLH  283

Query  337  LPTIIIGGVVNGHVACKYI---YVRMWRHSDRMHKRDLVATGSWVLIGLATWIVAWIIAE  393
               +I+   +      + +     R         K +  +    V+I     ++ ++IA 
Sbjct  284  ---VILSFPLQLFPIRQIVENLLFRKEAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAI  340

Query  394  AIPVFNNLLSLVGVTFC  410
            ++P F +LLSLVG T C
Sbjct  341  SVPFFGDLLSLVGATSC  357



Lambda      K        H        a         alpha
   0.327    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0751    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00034423

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00029433

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  73.5    4e-15


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 73.5 bits (181),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 99/258 (38%), Gaps = 26/258 (10%)

Query  62   WCVFSAVLIVMIAVGV---------QRPWHGGLNATV-DTNLYKAFLAVCNIVFSFSGHV  111
              + +AV  +   V +               G   +  +  L   FLA+  IVF+F GH 
Sbjct  151  LSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTNIKLAGTFLAIGIIVFAFEGHA  210

Query  112  AFFGFMAELRNPRDYP---KSLFLLQGIDTCLYIIAAVVIYCYAGDDVTSPALGS-----  163
                   E++NP  +    K L     I T LYI+  +V Y   GD+V    L +     
Sbjct  211  VLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLVGYLAFGDNVKGNILLNLPKSA  270

Query  164  ASTIVKKVAYGIALPTIIIGGVVNGHVACKYI---YVRMWRHSDRMHKRDLVATGSWVLI  220
                +  +   +    +I+   +      + +     R         K +  +    V+I
Sbjct  271  WLIDIANLLLVLH---VILSFPLQLFPIRQIVENLLFRKEAPFGASGKNNPKSKLLRVVI  327

Query  221  GLATWIVAWIIAEAIPVFNNLLSLVASLFASWFTYGFSALFWLYLNKGRFFSTPMKTALT  280
                 ++ ++IA ++P F +LLSLV +   +  ++    LF L L K +  S        
Sbjct  328  RSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFILPPLFHLKLKKTKKKSQEKLWKPD  387

Query  281  ILNV--VIMGVACCICGL  296
            IL+V  +++G+     G+
Sbjct  388  ILDVICIVIGLLLMAYGV  405



Lambda      K        H        a         alpha
   0.325    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00029434

Length=315


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00034425

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  93.9    9e-22


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 93.9 bits (234),  Expect = 9e-22, Method: Composition-based stats.
 Identities = 74/342 (22%), Positives = 138/342 (40%), Gaps = 23/342 (7%)

Query  21   SMGDAGEVIMGRFGRELFGTGQLLLVVFIMASHILTFTVAMNSI-----TDHGTCSIVFG  75
            S GD G  ++G  GR L     LL +  +  S+++     + +I            + F 
Sbjct  70   SYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFI  129

Query  76   VVGLVISFVLCLPRTLAKVSFLSVASFISVFSAVLIVMIAV---GVQRPWHGGLNATV-D  131
            ++  +I   L     L+ +S LS+ + +S    ++I++++V    V      G   +  +
Sbjct  130  IIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTN  189

Query  132  TNLYKAFLAVCNIVFSFSGHVAFFGFMAELRNPRDYP---KSLFLLQGIDTCLYIIAAVV  188
              L   FLA+  IVF+F GH        E++NP  +    K L     I T LYI+  +V
Sbjct  190  IKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLV  249

Query  189  IYCYAGDDVTSPALGS-----ASTIVKKVAYGIALPTIIIGGVVNGHVACKYI---YVRM  240
             Y   GD+V    L +         +  +   +    +I+   +      + +     R 
Sbjct  250  GYLAFGDNVKGNILLNLPKSAWLIDIANLLLVLH---VILSFPLQLFPIRQIVENLLFRK  306

Query  241  WRHSDRMHKRDLVATGSWVLIGLATWIVAWIIAEAIPVFNNLLSLVASLFASWFTYGFSA  300
                    K +  +    V+I     ++ ++IA ++P F +LLSLV +   +  ++    
Sbjct  307  EAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFILPP  366

Query  301  LFWLYLNKGRFFSTPMKTALTILNVVIMGVACCICGLGLYVS  342
            LF L L K +  S        IL+V+ + +   +   G+   
Sbjct  367  LFHLKLKKTKKKSQEKLWKPDILDVICIVIGLLLMAYGVAGL  408



Lambda      K        H        a         alpha
   0.329    0.141    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00034426

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  83.5    4e-18


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 83.5 bits (207),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 74/359 (21%), Positives = 138/359 (38%), Gaps = 40/359 (11%)

Query  21   SMGDAGEVIMGRFGRELFGTGQLLLVVFIMASHILTFTVAMNSI-----TDHGTCSIVFG  75
            S GD G  ++G  GR L     LL +  +  S+++     + +I            + F 
Sbjct  70   SYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFI  129

Query  76   VVGLVISFVLCLPRTLAKVSFLSVASFISVFSAVLIVMIAV---GVQRPWHGGLNATV-D  131
            ++  +I   L     L+ +S LS+ + +S    ++I++++V    V      G   +  +
Sbjct  130  IIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTN  189

Query  132  TNLYKAFLAVCNIVFSFCRLFLHFSSFMDRTNKTAGHVAFFGFMAELRNPRDYP---KSL  188
              L   FLA+  IVF+F                  GH        E++NP  +    K L
Sbjct  190  IKLAGTFLAIGIIVFAF-----------------EGHAVLLPIQNEMKNPSKFKAMTKIL  232

Query  189  FLLQGIDTCLYIIAAVVIYCYAGDDVTSPALGS-----ASTIVKKVAYGIALPTIIIGGV  243
                 I T LYI+  +V Y   GD+V    L +         +  +   +    +I+   
Sbjct  233  LTAIIIATVLYILIGLVGYLAFGDNVKGNILLNLPKSAWLIDIANLLLVLH---VILSFP  289

Query  244  VNGHVACKYI---YVRMWRHSDRMHKRDLVATGSWVLIGLATWIVAWIIAEAIPVFNNLL  300
            +      + +     R         K +  +    V+I     ++ ++IA ++P F +LL
Sbjct  290  LQLFPIRQIVENLLFRKEAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLL  349

Query  301  SLVASLFASWFTYGFSALFWLYLNKGRFFSTPMKTALTILNVVIMGVACCICGLGLYVS  359
            SLV +   +  ++    LF L L K +  S        IL+V+ + +   +   G+   
Sbjct  350  SLVGATSCAPLSFILPPLFHLKLKKTKKKSQEKLWKPDILDVICIVIGLLLMAYGVAGL  408



Lambda      K        H        a         alpha
   0.330    0.141    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00029435

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  85.1    6e-19


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 85.1 bits (211),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 69/329 (21%), Positives = 128/329 (39%), Gaps = 29/329 (9%)

Query  21   SMGDAGEVIMGRFGRELFGTGQLLLVVFIMASHILTFTVAMNSI-----TDHGTCSIVFG  75
            S GD G  ++G  GR L     LL +  +  S+++     + +I            + F 
Sbjct  70   SYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFI  129

Query  76   VVGLVISFVLCLPRTLAKVSFLSVASFISVFSAVLIVMIAV---GVQRPWHGGLNATV-D  131
            ++  +I   L     L+ +S LS+ + +S    ++I++++V    V      G   +  +
Sbjct  130  IIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTN  189

Query  132  TNLYKAFLAVCNIVFSFSGHVAFFGFMAELRNPRDYP---KSLFLLQGIDTCLYIIAAVV  188
              L   FLA+  IVF+F GH        E++NP  +    K L     I T LYI+  +V
Sbjct  190  IKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLV  249

Query  189  IYCYAGDDVTSPALGS-----ASTIVKKVAYGIALPTIIIGGVVNGHVACKYI---YVRM  240
             Y   GD+V    L +         +  +   +    +I+   +      + +     R 
Sbjct  250  GYLAFGDNVKGNILLNLPKSAWLIDIANLLLVLH---VILSFPLQLFPIRQIVENLLFRK  306

Query  241  WRHSDRMHKRDLVATGSWVLIGLATWIVAWIIAEAIPVFNNLLSLVREVLVVICTMIWER  300
                    K +  +    V+I     ++ ++IA ++P F +LLSLV        + I   
Sbjct  307  EAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFIL--  364

Query  301  VLIAPSVTAFRQPGTPDQPTEHLFPLALF  329
                P +   +   T  +  E L+   + 
Sbjct  365  ----PPLFHLKLKKTKKKSQEKLWKPDIL  389



Lambda      K        H        a         alpha
   0.329    0.142    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00034427

Length=244


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00029436

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transpor...  85.1    6e-19


>CDD:279788 pfam01490, Aa_trans, Transmembrane amino acid transporter protein. 
 This transmembrane region is found in many amino acid 
transporters including UNC-47 and MTR. UNC-47 encodes a vesicular 
amino butyric acid (GABA) transporter, (VGAT). UNC-47 
is predicted to have 10 transmembrane domains. MTR is a N system 
amino acid transporter system protein involved in methyltryptophan 
resistance. Other members of this family include 
proline transporters and amino acid permeases.
Length=410

 Score = 85.1 bits (211),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 69/329 (21%), Positives = 128/329 (39%), Gaps = 29/329 (9%)

Query  21   SMGDAGEVIMGRFGRELFGTGQLLLVVFIMASHILTFTVAMNSI-----TDHGTCSIVFG  75
            S GD G  ++G  GR L     LL +  +  S+++     + +I            + F 
Sbjct  70   SYGDLGYRLLGPKGRLLILFAILLNLFGVCISYLIFAGDNLPAIFDSFFDTCPISLVYFI  129

Query  76   VVGLVISFVLCLPRTLAKVSFLSVASFISVFSAVLIVMIAV---GVQRPWHGGLNATV-D  131
            ++  +I   L     L+ +S LS+ + +S    ++I++++V    V      G   +  +
Sbjct  130  IIFGLIFIPLSFIPNLSALSILSLLAAVSSLYYIVILVLSVAEGIVLTAQGVGHLGSKTN  189

Query  132  TNLYKAFLAVCNIVFSFSGHVAFFGFMAELRNPRDYP---KSLFLLQGIDTCLYIIAAVV  188
              L   FLA+  IVF+F GH        E++NP  +    K L     I T LYI+  +V
Sbjct  190  IKLAGTFLAIGIIVFAFEGHAVLLPIQNEMKNPSKFKAMTKILLTAIIIATVLYILIGLV  249

Query  189  IYCYAGDDVTSPALGS-----ASTIVKKVAYGIALPTIIIGGVVNGHVACKYI---YVRM  240
             Y   GD+V    L +         +  +   +    +I+   +      + +     R 
Sbjct  250  GYLAFGDNVKGNILLNLPKSAWLIDIANLLLVLH---VILSFPLQLFPIRQIVENLLFRK  306

Query  241  WRHSDRMHKRDLVATGSWVLIGLATWIVAWIIAEAIPVFNNLLSLVREVLVVICTMIWER  300
                    K +  +    V+I     ++ ++IA ++P F +LLSLV        + I   
Sbjct  307  EAPFGASGKNNPKSKLLRVVIRSGLVVITYLIAISVPFFGDLLSLVGATSCAPLSFIL--  364

Query  301  VLIAPSVTAFRQPGTPDQPTEHLFPLALF  329
                P +   +   T  +  E L+   + 
Sbjct  365  ----PPLFHLKLKKTKKKSQEKLWKPDIL  389



Lambda      K        H        a         alpha
   0.329    0.142    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00034428

Length=266


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00029437

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00034429

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00029438

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00029439

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00029441

Length=434
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF42...  268     2e-86


>CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF4246).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and fungi. Proteins 
in this family are typically between 392 and 644 amino acids 
in length.
Length=421

 Score = 268 bits (688),  Expect = 2e-86, Method: Composition-based stats.
 Identities = 84/215 (39%), Positives = 115/215 (53%), Gaps = 30/215 (14%)

Query  158  RPPRITPPPHKYYTIQLQDKFREHGLQIIVKMENIELTPDSGSYKGTDWRIEGQLNEHLV  217
              P      H+ Y + L++ FR+ GLQ+IVK+ NIELTP+   Y G  W +EGQLNEH+V
Sbjct  237  VLPEPGTAFHEPYPVDLREDFRDRGLQVIVKLANIELTPEKPEYPGGSWHVEGQLNEHIV  296

Query  218  AAAVFAYDVANITEPRIAFRQNTKLDERFYRCSEDREQRRKVHPRHDVPAQQCGKYGSTE  277
            A A++ YD  NITE R++FRQ T  ++ F                         +Y   +
Sbjct  297  ATALYYYDSENITESRLSFRQQTDAEDLFEE----------------------LEYEQDD  334

Query  278  FAAVAEILGFSTADLDPCCNHAVKTWQDKGTVRVLQGRLVTFPNLLEHRYEPFALADPSR  337
               +  + G          N      Q+ G+V   +GRL+ FPN L+HR  PF LAD ++
Sbjct  335  HDWLERVFG--------IENGEGSAVQELGSVETKEGRLLAFPNTLQHRVSPFELADKTK  386

Query  338  PGCFRFIVLYLVDPHYRVCSTRNVPPQQHHWWAES  372
            PG  + + L+LVDPH R+ ST NVPPQQ  WWAE 
Sbjct  387  PGHRKILALFLVDPHIRIISTANVPPQQRDWWAEE  421



Lambda      K        H        a         alpha
   0.321    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 527594176


Query= TCONS_00034431

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00034432

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00029444

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00029445

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00029446

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00034434

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395031 pfam00078, RVT_1, Reverse transcriptase (RNA-dependent...  93.1    3e-23


>CDD:395031 pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA polymerase). 
 A reverse transcriptase gene is usually indicative 
of a mobile element such as a retrotransposon or retrovirus. 
Reverse transcriptases occur in a variety of mobile elements, 
including retrotransposons, retroviruses, group II introns, 
bacterial msDNAs, hepadnaviruses, and caulimoviruses.
Length=189

 Score = 93.1 bits (232),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 67/198 (34%), Gaps = 43/198 (22%)

Query  17   VPKA----YRPIALLNTLSKLLETLIASRMSYLAEAHGLLPDNHFGGRRGQGTETALHAA  72
            +PK     YRPI+LL+   K L  +I  R+    +   L      G R G          
Sbjct  1    IPKKGKGKYRPISLLSIDYKALNKIIVKRL----KPENLDSPPQPGFRPGL---------  47

Query  73   LEAIHSGWKNGKVVSALLLDISGAFDNVSHDRLLHNLRTRRIPQAYVTWLGSFLRGRSTS  132
                    K  K    L LD+  AFD V  D L   L     P   + W G    GR   
Sbjct  48   -------AKLKKAKWFLKLDLKKAFDQVPLDELDRKLTAFTTPPININWNGELSGGRYEW  100

Query  133  LVLPEYTLPTRRVETGIPQGSPLSPILYIFYNAGLMGRGAPEWGTDNIGYIDDTTMLATG  192
              L              PQG  LSP L+  +   L+       G   + Y DD  + +  
Sbjct  101  KGL--------------PQGLVLSPALFQLFMNELLRPLRKRAGLTLVRYADDILIFSKS  146

Query  193  DSEHANC-----QRLREH  205
            + EH        + L+E 
Sbjct  147  EEEHQEALEEVLEWLKES  164



Lambda      K        H        a         alpha
   0.321    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00029449

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00029448

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00029450

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00034435

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00029459

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00029451

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00029453

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00029452

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00034436

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00034437

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00029456

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00029455

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00029454

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00029457

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00029458

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00034438

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00029460

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00029461

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00029462

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00029464

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00029463

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00029465

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00034439

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00029466

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00029467

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00029468

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00029469

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461719 pfam05705, DUF829, Eukaryotic protein of unknown funct...  231     4e-76


>CDD:461719 pfam05705, DUF829, Eukaryotic protein of unknown function (DUF829). 
 This family consists of several uncharacterized eukaryotic 
proteins.
Length=241

 Score = 231 bits (592),  Expect = 4e-76, Method: Composition-based stats.
 Identities = 85/252 (34%), Positives = 122/252 (48%), Gaps = 20/252 (8%)

Query  70   LVIVCTWLGASAKHITKYTDLHRSIAPHARILLIESEVSILVSSYARQRRLIRPAVDVVL  129
            LVI+  WLGA  KH+ KY+DL+R   P    + I +    L+    R    + PA+D +L
Sbjct  2    LVILLGWLGARPKHLAKYSDLYRD--PGYTTVRITAPSKDLLWRTKR----LAPALDKLL  55

Query  130  ETLADRTESDAPRILLHTFSNGGTNTATQLL--ITLAKTVSQPLPLV-GLVLDSTPARGT  186
            E L++   S+   IL H FSNGG      LL  +    +  +PLP + G+V DS P  G 
Sbjct  56   ELLSESQRSEYWPILFHVFSNGGGFLYLALLKALQEQYSFKKPLPKIKGIVFDSAPGIGH  115

Query  187  YWKSYNAMVFSLPPSSR-----LVGSVVVHFLLILLYTWIACGNENPASLMRRTLLDEET  241
            + ++  A   +LP SS       + S++   L + L   +     + AS  R+ L D  T
Sbjct  116  FLQNAKAFSAALPKSSSVWSSHKLRSLLALALALTLLVLLILFLPSVASYSRKALNDLAT  175

Query  242  VGPAPQRDAPGYVCYMYSKEDRMTDWRDVWDHAQEAEEKGWKVDKVLFEGTGHCAHMPDN  301
                  +       Y+YSK DR+  WRDV   A EA ++G  VD V FE + H  HM  +
Sbjct  176  GPLPCPQ------LYLYSKADRVIPWRDVESFADEARQRGVSVDAVCFEDSPHVGHMRSH  229

Query  302  PARYAEAVEKAW  313
            P RY   V + W
Sbjct  230  PERYWPKVVEFW  241



Lambda      K        H        a         alpha
   0.319    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00034441

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426203 pfam01328, Peroxidase_2, Peroxidase, family 2. The per...  93.9    4e-24


>CDD:426203 pfam01328, Peroxidase_2, Peroxidase, family 2.  The peroxidases 
in this family do not have similarity to other peroxidases.
Length=186

 Score = 93.9 bits (234),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 62/185 (34%), Positives = 81/185 (44%), Gaps = 49/185 (26%)

Query  75   FNGSGENGEYRRSSCPAVNALANRGYINRSGRNITYAELAHAVRKVWNFGDDNVILPPEE  134
            F   G      R  CP +N LAN GY+ R G+NIT++EL  A+R+ +N   D        
Sbjct  3    FRPPGPG--DSRGPCPGLNTLANHGYLPRDGKNITFSELIAALREGYNMSPD--------  52

Query  135  SLVLHSTNSFPQSMLVLAPTFAMHGWPETIDLDYFNARYCSRFLEEYELTLAQDDLVQYV  194
                            LA  F       T DLD  N                       V
Sbjct  53   ----------------LA-AFLALLGVLTFDLDDLN--------------------RHNV  75

Query  195  INCPAAPTRND-RAVGDNINLNMTLFESLLSFSKDGETLSLEDLAEHHHLRHNQSKAENP  253
            I   A+ TR D    GDN++ N TLF+ LLS+   G+TL+L+DLAE    R+ +S+A NP
Sbjct  76   IEHDASLTREDAYFGGDNVHFNPTLFDQLLSYG-TGDTLTLDDLAEARVRRYAESRANNP  134

Query  254  NFVFG  258
             F FG
Sbjct  135  YFTFG  139



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00034442

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426203 pfam01328, Peroxidase_2, Peroxidase, family 2. The per...  125     8e-36


>CDD:426203 pfam01328, Peroxidase_2, Peroxidase, family 2.  The peroxidases 
in this family do not have similarity to other peroxidases.
Length=186

 Score = 125 bits (317),  Expect = 8e-36, Method: Composition-based stats.
 Identities = 71/199 (36%), Positives = 101/199 (51%), Gaps = 18/199 (9%)

Query  75   FNGSGENGEYRRSSCPAVNALANRGYINRSGRNITYAELAHAVRKVWNFGDDNSMLVLAP  134
            F   G      R  CP +N LAN GY+ R G+NIT++EL  A+R+ +N   D +  +   
Sbjct  3    FRPPGPG--DSRGPCPGLNTLANHGYLPRDGKNITFSELIAALREGYNMSPDLAAFLALL  60

Query  135  TFAMHGWPETIDLDYFNDDLVQYVINCPAAPTRND-RAVGDNINLNMTLFESLLSFSKDG  193
                     T DLD  N      VI   A+ TR D    GDN++ N TLF+ LLS+   G
Sbjct  61   GVL------TFDLDDLN---RHNVIEHDASLTREDAYFGGDNVHFNPTLFDQLLSYG-TG  110

Query  194  ETLSLEDLAEHHHLRHNQSKAENPNFVFGNQGAICSLAQYTNMVGVLGKFGKHGRTTLFI  253
            +TL+L+DLAE    R+ +S+A NP F F   G + +L  Y      L  FG  G      
Sbjct  111  DTLTLDDLAEARVRRYAESRANNPYFTF---GPVHALIAYGEAALFLEVFGDEGTVDK--  165

Query  254  DDVKTFYLDEDIPRNYERR  272
            + +++F+ +E IP  + RR
Sbjct  166  EVLRSFFGEERIPEGWYRR  184



Lambda      K        H        a         alpha
   0.321    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00034443

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426203 pfam01328, Peroxidase_2, Peroxidase, family 2. The per...  93.9    4e-24


>CDD:426203 pfam01328, Peroxidase_2, Peroxidase, family 2.  The peroxidases 
in this family do not have similarity to other peroxidases.
Length=186

 Score = 93.9 bits (234),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 62/185 (34%), Positives = 81/185 (44%), Gaps = 49/185 (26%)

Query  75   FNGSGENGEYRRSSCPAVNALANRGYINRSGRNITYAELAHAVRKVWNFGDDNVILPPEE  134
            F   G      R  CP +N LAN GY+ R G+NIT++EL  A+R+ +N   D        
Sbjct  3    FRPPGPG--DSRGPCPGLNTLANHGYLPRDGKNITFSELIAALREGYNMSPD--------  52

Query  135  SLVLHSTNSFPQSMLVLAPTFAMHGWPETIDLDYFNARYCSRFLEEYELTLAQDDLVQYV  194
                            LA  F       T DLD  N                       V
Sbjct  53   ----------------LA-AFLALLGVLTFDLDDLN--------------------RHNV  75

Query  195  INCPAAPTRND-RAVGDNINLNMTLFESLLSFSKDGETLSLEDLAEHHHLRHNQSKAENP  253
            I   A+ TR D    GDN++ N TLF+ LLS+   G+TL+L+DLAE    R+ +S+A NP
Sbjct  76   IEHDASLTREDAYFGGDNVHFNPTLFDQLLSYG-TGDTLTLDDLAEARVRRYAESRANNP  134

Query  254  NFVFG  258
             F FG
Sbjct  135  YFTFG  139



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00029470

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426203 pfam01328, Peroxidase_2, Peroxidase, family 2. The per...  111     3e-30


>CDD:426203 pfam01328, Peroxidase_2, Peroxidase, family 2.  The peroxidases 
in this family do not have similarity to other peroxidases.
Length=186

 Score = 111 bits (281),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 102/235 (43%), Gaps = 54/235 (23%)

Query  75   FNGSGENGEYRRSSCPAVNALANRGYINRSGRNITYAELAHAVRKVWNFGDDNVILPPEE  134
            F   G      R  CP +N LAN GY+ R G+NIT++EL  A+R+ +N   D        
Sbjct  3    FRPPGPG--DSRGPCPGLNTLANHGYLPRDGKNITFSELIAALREGYNMSPD--------  52

Query  135  SLVLHSTNSFPQSMLVLAPTFAMHGWPETIDLDYFNARYCSRFLEEYELTLAQDDLVQYV  194
                            LA  F       T DLD  N                       V
Sbjct  53   ----------------LA-AFLALLGVLTFDLDDLN--------------------RHNV  75

Query  195  INCPAAPTRND-RAVGDNINLNMTLFESLLSFSKDGETLSLEDLAEHHHLRHNQSKAENP  253
            I   A+ TR D    GDN++ N TLF+ LLS+   G+TL+L+DLAE    R+ +S+A NP
Sbjct  76   IEHDASLTREDAYFGGDNVHFNPTLFDQLLSYG-TGDTLTLDDLAEARVRRYAESRANNP  134

Query  254  NFVFGNQGAICSLAQYTNMVGVLGKFGKHGRTTLFIDDVKTFYLDEDIPRNYERR  308
             F F   G + +L  Y      L  FG  G      + +++F+ +E IP  + RR
Sbjct  135  YFTF---GPVHALIAYGEAALFLEVFGDEGTVDK--EVLRSFFGEERIPEGWYRR  184



Lambda      K        H        a         alpha
   0.321    0.137    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00029471

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427098 pfam03006, HlyIII, Haemolysin-III related. Members of ...  99.7    1e-25


>CDD:427098 pfam03006, HlyIII, Haemolysin-III related.  Members of this family 
are integral membrane proteins. This family includes a 
protein with hemolytic activity from Bacillus cereus. It has 
been proposed that YOL002c encodes a Saccharomyces cerevisiae 
protein that plays a key role in metabolic pathways that 
regulate lipid and phosphate metabolism. In eukaryotes, members 
are seven-transmembrane pass molecules found to encode 
functional receptors with a broad range of apparent ligand specificities, 
including progestin and adipoQ receptors, and 
hence have been named PAQR proteins. The mammalian members include 
progesterone binding proteins. Unlike the case with GPCR 
receptor proteins, the evolutionary ancestry of the members 
of this family can be traced back to the Archaea. This family 
belongs to the CREST superfamily, which are distantly 
related to GPCRs.
Length=222

 Score = 99.7 bits (249),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 63/227 (28%), Positives = 101/227 (44%), Gaps = 25/227 (11%)

Query  73   FYLHNESVNTWSHIIPGMYFLTLLLAIDYWIIQLPLEVPVMDILAIQTYVAGTAGCLIFS  132
            F +HNE++N W+H++  + F+ LL+   + +    ++  +  +L    ++     CL  S
Sbjct  1    FQIHNETLNIWTHLLGAILFIALLI---FLLALATIDSQLSAVLPFLIFLLSACLCLGCS  57

Query  133  AAFHATNAHSPEVAHAFLKLDYLGIVMTITTTCISVTYFALYSYPILQVTYIFLTVLCAA  192
            A +H  + HS +V   F KLDY GI + I  +   V Y+A Y  P L    I+L+ + A 
Sbjct  58   ALYHTFSCHSEKVRKLFRKLDYSGIFLLIAGSYTPVIYYAFYCAPKLG--TIYLSFIWAL  115

Query  193  TIFWVALDPRMDGARAGPWRSVFAMPLLALQRPDSANLLCRAAVFFLLATSGLAPIFHVI  252
             I  +                 F+ P              R AV+ L+  SG+ PI H  
Sbjct  116  AILGIIS----------KLLWCFSKPAPR---------WLRTAVYILMGWSGIIPIAHRA  156

Query  253  WAEASYG-LIRIPLDSLTVTCSSYAVGTAVYVTRFPERFWPARFDLI  298
             A    G  + I L  L +    Y +G   Y  R PER +P +FD++
Sbjct  157  LALGGAGEALEIALVLLVLGGVLYIIGAVFYALRVPERLFPGKFDIV  203



Lambda      K        H        a         alpha
   0.328    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0781    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00029472

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00029474

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00029473

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  98.9    8e-25
CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase      78.0    8e-17


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 98.9 bits (247),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 56/236 (24%), Positives = 101/236 (43%), Gaps = 25/236 (11%)

Query  6    VLVTGSAGHLGTALMLSLPELGFTPFGIDILPSSTTTRV--------GSITNRAFISSVL  57
            +LVTG+ G +G+ L+  L E G+   G+D L S++ T          G +T+R  +  +L
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARLADLRFVEGDLTDRDALEKLL  60

Query  58   MSHPIKHILHAATLHKPHICSHQNEDFVATNILGTLVLLEESAKSPRQIESFIFFSTTST  117
                   ++H A +          EDF+  N+LGTL LLE + K+   ++ F+F S++  
Sbjct  61   ADVRPDAVIHLAAVGGVGASIEDPEDFIEANVLGTLNLLEAARKAG--VKRFLFASSSEV  118

Query  118  FGMALSPKPGSPAAWIDETVVPEPKNIYGVTKVAAEDLCALIHKQSGMPVLVLRTSRFF-  176
            +G         P      T    P + Y   K+A E L        G+  ++LR    + 
Sbjct  119  YG----DGAEIPQEETTLTGPLAPNSPYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174

Query  177  PEEDDDEGR-------RAAMSDENLKVL-ELAYRR--CDIEDIVRAAVCAMAKARD  222
            P +++           R  +  + + +  +   RR    ++D+ RA + A+     
Sbjct  175  PGDNEGFVSRVIPALIRRILEGKPILLWGDGTQRRDFLYVDDVARAILLALEHGAV  230


>CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase.  
Length=327

 Score = 78.0 bits (193),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 74/356 (21%), Positives = 121/356 (34%), Gaps = 87/356 (24%)

Query  7    LVTGSAGHLGTALMLSLPELGFTPFGIDILPSSTTTRV-----------------GSITN  49
            L+TG  G  G+ L   L E G+   GI    SS  T                   G +T+
Sbjct  1    LITGITGQDGSYLAELLLEKGYEVHGIVRRSSSFNTGRLEHLYDDHLNGNLVLHYGDLTD  60

Query  50   RAFISSVLMSHPIKHILH-AA------TLHKPHICSHQNEDFVATNILGTLVLLEESAKS  102
             + +  +L       I + AA      +  +P       E    TN+LGTL LLE + +S
Sbjct  61   SSNLVRLLAEVQPDEIYNLAAQSHVDVSFEQP-------EYTADTNVLGTLRLLE-AIRS  112

Query  103  PRQIESFIFF--STTSTFGMALSPKPGSPAAWIDETVVPEPKNIYGVTKVAAEDLCALIH  160
                +   F+  ST+  +G     K         ET    P++ Y   K+ A+ +     
Sbjct  113  LGLEKKVRFYQASTSEVYG-----KVQEVP--QTETTPFYPRSPYAAAKLYADWIVVNYR  165

Query  161  KQSGMPVLVLRTS--------RFFPEEDDDEGR-------RAAMSDENLKVL-ELAYRRC  204
            +  G+                  F        R       R  +  +    L  L  +R 
Sbjct  166  ESYGLFACNGILFNHESPRRGERFVT------RKITRGVARIKLGKQEKLYLGNLDAKRD  219

Query  205  --DIEDIVRAAVCAMAKARDIRWGKYIISAPPLFKNDARTL-DQLDRNPAEVFNELCPEL  261
                 D V A    + + +      Y+I+       +  T+ + +++   E+   +  E 
Sbjct  220  WGHARDYVEAMWLMLQQDKP---DDYVIAT-----GETHTVREFVEKAFLELGLTITWEG  271

Query  262  GAV--FEKKGWKHLSRIDRVY-----------DSSKAMRELGWEPQYTFAKTVERL  304
                 + K   K    ID  Y           D SKA  ELGW+P+ +F + V  +
Sbjct  272  KGEIGYFKASGKVHVLIDPRYFRPGEVDRLLGDPSKAKEELGWKPKVSFEELVREM  327



Lambda      K        H        a         alpha
   0.319    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00029476

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00029477

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00029478

Length=88
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399391 pfam06355, Aegerolysin, Aegerolysin. This family consi...  108     8e-33


>CDD:399391 pfam06355, Aegerolysin, Aegerolysin.  This family consists of 
several bacterial and fungal Aegerolysin-like proteins. It 
has been found that aegerolysin and ostreolysin are expressed 
during formation of primordia and fruiting bodies. It has 
been suggested that these haemolysins play an important role 
in initial phase of fungal fruiting. The bacterial members 
of this family are expressed during sporulation. Ostreolysin 
was found cytolytic to various erythrocytes and tumor cells. 
It forms transmembrane pores 4 nm in diameter. The activity 
is inhibited by total membrane lipids, and modulated by lysophosphatides. 
The potential use of aegerolysins is reviewed 
with special emphasis on their properties which would allow 
their use in therapeutics. Aegerolysin is part of the pleurotolysin 
pore-forming (Pleurotolysin) transporter superfamily. 
Member proteins assemble into a transmembrane pore complex.
Length=131

 Score = 108 bits (272),  Expect = 8e-33, Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 51/89 (57%), Gaps = 5/89 (6%)

Query  1    MIIRHNGGLRHVCSCGEEKGFKGLQGTIDLIDDVKDAKICTLEWNAPMEPGKRNTFMLRD  60
            M I   GG   +CSCG E    G +GT DL D   + KICTL W+ P    K N F +RD
Sbjct  47   MNIPP-GGSGEICSCGRENAASGTEGTFDLYDG--ETKICTLYWDCPWG-SKSNKFEVRD  102

Query  61   QDPRYHIDIGQWNES-GILGKVPVTISDE  88
             D +Y ++ G WNES G LG V VTIS +
Sbjct  103  SDDKYKVETGGWNESSGALGHVTVTISRK  131



Lambda      K        H        a         alpha
   0.320    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00029475

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399391 pfam06355, Aegerolysin, Aegerolysin. This family consi...  98.9    9e-29


>CDD:399391 pfam06355, Aegerolysin, Aegerolysin.  This family consists of 
several bacterial and fungal Aegerolysin-like proteins. It 
has been found that aegerolysin and ostreolysin are expressed 
during formation of primordia and fruiting bodies. It has 
been suggested that these haemolysins play an important role 
in initial phase of fungal fruiting. The bacterial members 
of this family are expressed during sporulation. Ostreolysin 
was found cytolytic to various erythrocytes and tumor cells. 
It forms transmembrane pores 4 nm in diameter. The activity 
is inhibited by total membrane lipids, and modulated by lysophosphatides. 
The potential use of aegerolysins is reviewed 
with special emphasis on their properties which would allow 
their use in therapeutics. Aegerolysin is part of the pleurotolysin 
pore-forming (Pleurotolysin) transporter superfamily. 
Member proteins assemble into a transmembrane pore complex.
Length=131

 Score = 98.9 bits (247),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 34/76 (45%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query  1    MIIRHNGGLRHVCSCGEEKGFKGLQGTIDLIDDVKDAKICTLEWNAPMEPGKRNTFMLRD  60
            M I   GG   +CSCG E    G +GT DL D   + KICTL W+ P    K N F +RD
Sbjct  47   MNIPP-GGSGEICSCGRENAASGTEGTFDLYDG--ETKICTLYWDCPWG-SKSNKFEVRD  102

Query  61   QDPRYHIDIGQWNESG  76
             D +Y ++ G WNES 
Sbjct  103  SDDKYKVETGGWNESS  118



Lambda      K        H        a         alpha
   0.324    0.140    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00029479

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399391 pfam06355, Aegerolysin, Aegerolysin. This family consi...  98.9    9e-29


>CDD:399391 pfam06355, Aegerolysin, Aegerolysin.  This family consists of 
several bacterial and fungal Aegerolysin-like proteins. It 
has been found that aegerolysin and ostreolysin are expressed 
during formation of primordia and fruiting bodies. It has 
been suggested that these haemolysins play an important role 
in initial phase of fungal fruiting. The bacterial members 
of this family are expressed during sporulation. Ostreolysin 
was found cytolytic to various erythrocytes and tumor cells. 
It forms transmembrane pores 4 nm in diameter. The activity 
is inhibited by total membrane lipids, and modulated by lysophosphatides. 
The potential use of aegerolysins is reviewed 
with special emphasis on their properties which would allow 
their use in therapeutics. Aegerolysin is part of the pleurotolysin 
pore-forming (Pleurotolysin) transporter superfamily. 
Member proteins assemble into a transmembrane pore complex.
Length=131

 Score = 98.9 bits (247),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 34/76 (45%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query  1    MIIRHNGGLRHVCSCGEEKGFKGLQGTIDLIDDVKDAKICTLEWNAPMEPGKRNTFMLRD  60
            M I   GG   +CSCG E    G +GT DL D   + KICTL W+ P    K N F +RD
Sbjct  47   MNIPP-GGSGEICSCGRENAASGTEGTFDLYDG--ETKICTLYWDCPWG-SKSNKFEVRD  102

Query  61   QDPRYHIDIGQWNESG  76
             D +Y ++ G WNES 
Sbjct  103  SDDKYKVETGGWNESS  118



Lambda      K        H        a         alpha
   0.324    0.140    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00029480

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  98.9    8e-25
CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase      78.0    8e-17


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 98.9 bits (247),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 56/236 (24%), Positives = 101/236 (43%), Gaps = 25/236 (11%)

Query  6    VLVTGSAGHLGTALMLSLPELGFTPFGIDILPSSTTTRV--------GSITNRAFISSVL  57
            +LVTG+ G +G+ L+  L E G+   G+D L S++ T          G +T+R  +  +L
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARLADLRFVEGDLTDRDALEKLL  60

Query  58   MSHPIKHILHAATLHKPHICSHQNEDFVATNILGTLVLLEESAKSPRQIESFIFFSTTST  117
                   ++H A +          EDF+  N+LGTL LLE + K+   ++ F+F S++  
Sbjct  61   ADVRPDAVIHLAAVGGVGASIEDPEDFIEANVLGTLNLLEAARKAG--VKRFLFASSSEV  118

Query  118  FGMALSPKPGSPAAWIDETVVPEPKNIYGVTKVAAEDLCALIHKQSGMPVLVLRTSRFF-  176
            +G         P      T    P + Y   K+A E L        G+  ++LR    + 
Sbjct  119  YG----DGAEIPQEETTLTGPLAPNSPYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174

Query  177  PEEDDDEGR-------RAAMSDENLKVL-ELAYRR--CDIEDIVRAAVCAMAKARD  222
            P +++           R  +  + + +  +   RR    ++D+ RA + A+     
Sbjct  175  PGDNEGFVSRVIPALIRRILEGKPILLWGDGTQRRDFLYVDDVARAILLALEHGAV  230


>CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase.  
Length=327

 Score = 78.0 bits (193),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 74/356 (21%), Positives = 121/356 (34%), Gaps = 87/356 (24%)

Query  7    LVTGSAGHLGTALMLSLPELGFTPFGIDILPSSTTTRV-----------------GSITN  49
            L+TG  G  G+ L   L E G+   GI    SS  T                   G +T+
Sbjct  1    LITGITGQDGSYLAELLLEKGYEVHGIVRRSSSFNTGRLEHLYDDHLNGNLVLHYGDLTD  60

Query  50   RAFISSVLMSHPIKHILH-AA------TLHKPHICSHQNEDFVATNILGTLVLLEESAKS  102
             + +  +L       I + AA      +  +P       E    TN+LGTL LLE + +S
Sbjct  61   SSNLVRLLAEVQPDEIYNLAAQSHVDVSFEQP-------EYTADTNVLGTLRLLE-AIRS  112

Query  103  PRQIESFIFF--STTSTFGMALSPKPGSPAAWIDETVVPEPKNIYGVTKVAAEDLCALIH  160
                +   F+  ST+  +G     K         ET    P++ Y   K+ A+ +     
Sbjct  113  LGLEKKVRFYQASTSEVYG-----KVQEVP--QTETTPFYPRSPYAAAKLYADWIVVNYR  165

Query  161  KQSGMPVLVLRTS--------RFFPEEDDDEGR-------RAAMSDENLKVL-ELAYRRC  204
            +  G+                  F        R       R  +  +    L  L  +R 
Sbjct  166  ESYGLFACNGILFNHESPRRGERFVT------RKITRGVARIKLGKQEKLYLGNLDAKRD  219

Query  205  --DIEDIVRAAVCAMAKARDIRWGKYIISAPPLFKNDARTL-DQLDRNPAEVFNELCPEL  261
                 D V A    + + +      Y+I+       +  T+ + +++   E+   +  E 
Sbjct  220  WGHARDYVEAMWLMLQQDKP---DDYVIAT-----GETHTVREFVEKAFLELGLTITWEG  271

Query  262  GAV--FEKKGWKHLSRIDRVY-----------DSSKAMRELGWEPQYTFAKTVERL  304
                 + K   K    ID  Y           D SKA  ELGW+P+ +F + V  +
Sbjct  272  KGEIGYFKASGKVHVLIDPRYFRPGEVDRLLGDPSKAKEELGWKPKVSFEELVREM  327



Lambda      K        H        a         alpha
   0.319    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00029481

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  98.9    8e-25
CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase      78.0    8e-17


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 98.9 bits (247),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 56/236 (24%), Positives = 101/236 (43%), Gaps = 25/236 (11%)

Query  6    VLVTGSAGHLGTALMLSLPELGFTPFGIDILPSSTTTRV--------GSITNRAFISSVL  57
            +LVTG+ G +G+ L+  L E G+   G+D L S++ T          G +T+R  +  +L
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARLADLRFVEGDLTDRDALEKLL  60

Query  58   MSHPIKHILHAATLHKPHICSHQNEDFVATNILGTLVLLEESAKSPRQIESFIFFSTTST  117
                   ++H A +          EDF+  N+LGTL LLE + K+   ++ F+F S++  
Sbjct  61   ADVRPDAVIHLAAVGGVGASIEDPEDFIEANVLGTLNLLEAARKAG--VKRFLFASSSEV  118

Query  118  FGMALSPKPGSPAAWIDETVVPEPKNIYGVTKVAAEDLCALIHKQSGMPVLVLRTSRFF-  176
            +G         P      T    P + Y   K+A E L        G+  ++LR    + 
Sbjct  119  YG----DGAEIPQEETTLTGPLAPNSPYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174

Query  177  PEEDDDEGR-------RAAMSDENLKVL-ELAYRR--CDIEDIVRAAVCAMAKARD  222
            P +++           R  +  + + +  +   RR    ++D+ RA + A+     
Sbjct  175  PGDNEGFVSRVIPALIRRILEGKPILLWGDGTQRRDFLYVDDVARAILLALEHGAV  230


>CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase.  
Length=327

 Score = 78.0 bits (193),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 74/356 (21%), Positives = 121/356 (34%), Gaps = 87/356 (24%)

Query  7    LVTGSAGHLGTALMLSLPELGFTPFGIDILPSSTTTRV-----------------GSITN  49
            L+TG  G  G+ L   L E G+   GI    SS  T                   G +T+
Sbjct  1    LITGITGQDGSYLAELLLEKGYEVHGIVRRSSSFNTGRLEHLYDDHLNGNLVLHYGDLTD  60

Query  50   RAFISSVLMSHPIKHILH-AA------TLHKPHICSHQNEDFVATNILGTLVLLEESAKS  102
             + +  +L       I + AA      +  +P       E    TN+LGTL LLE + +S
Sbjct  61   SSNLVRLLAEVQPDEIYNLAAQSHVDVSFEQP-------EYTADTNVLGTLRLLE-AIRS  112

Query  103  PRQIESFIFF--STTSTFGMALSPKPGSPAAWIDETVVPEPKNIYGVTKVAAEDLCALIH  160
                +   F+  ST+  +G     K         ET    P++ Y   K+ A+ +     
Sbjct  113  LGLEKKVRFYQASTSEVYG-----KVQEVP--QTETTPFYPRSPYAAAKLYADWIVVNYR  165

Query  161  KQSGMPVLVLRTS--------RFFPEEDDDEGR-------RAAMSDENLKVL-ELAYRRC  204
            +  G+                  F        R       R  +  +    L  L  +R 
Sbjct  166  ESYGLFACNGILFNHESPRRGERFVT------RKITRGVARIKLGKQEKLYLGNLDAKRD  219

Query  205  --DIEDIVRAAVCAMAKARDIRWGKYIISAPPLFKNDARTL-DQLDRNPAEVFNELCPEL  261
                 D V A    + + +      Y+I+       +  T+ + +++   E+   +  E 
Sbjct  220  WGHARDYVEAMWLMLQQDKP---DDYVIAT-----GETHTVREFVEKAFLELGLTITWEG  271

Query  262  GAV--FEKKGWKHLSRIDRVY-----------DSSKAMRELGWEPQYTFAKTVERL  304
                 + K   K    ID  Y           D SKA  ELGW+P+ +F + V  +
Sbjct  272  KGEIGYFKASGKVHVLIDPRYFRPGEVDRLLGDPSKAKEELGWKPKVSFEELVREM  327



Lambda      K        H        a         alpha
   0.319    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00029482

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00034444

Length=184
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  216     2e-69


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 216 bits (552),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 106/185 (57%), Gaps = 4/185 (2%)

Query  1    MTQEQGKPLSQSTVEVGMAVQWARTIPT--IEIPETVIEDTDEHQIIQRYTPLGVCGAIV  58
             T E GKPL+++  EV  A+   R        +    +          R  PLGV GAI 
Sbjct  75   ETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSDPGRLAYTRREPLGVVGAIT  134

Query  59   PWNFPVLLAVGKIVPAVYTGNTVIVKPSPFTPYCGLKLAELAAQC-FPPGVVQALSG-GD  116
            PWNFP+LL   KI PA+  GNTV++KPS  TP   L LAEL  +   P GV+  ++G G 
Sbjct  135  PWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGA  194

Query  117  DLGPMITEHPGIDKISFTGSILTGKRVMASCAKTLKRVTLELGGNDPAIVCDDVNIDAVI  176
            ++G  + EHP + K+SFTGS   G+ +  + A+ LKRVTLELGG +P IV +D ++DA +
Sbjct  195  EVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIVLEDADLDAAV  254

Query  177  PKVMY  181
               ++
Sbjct  255  EAAVF  259



Lambda      K        H        a         alpha
   0.320    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00029483

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  513     0.0  


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 513 bits (1323),  Expect = 0.0, Method: Composition-based stats.
 Identities = 188/457 (41%), Positives = 250/457 (55%), Gaps = 15/457 (3%)

Query  26   INPANRQPNPEVPVSTQEDLDRAVESARQAFRKWSKTSFAERRTALNHFADKIEANKEAL  85
            INPA  +    VP +T ED+D A+ +AR AF  W KT  AER   L   AD +E  K+ L
Sbjct  12   INPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRKAADLLEERKDEL  71

Query  86   ARLMTQEQGKPLSQSTVEVGMAVQWARTIPT--IEIPETVIEDTDEHQIIQRYTPLGVCG  143
            A L T E GKPL+++  EV  A+   R        +    +          R  PLGV G
Sbjct  72   AELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSDPGRLAYTRREPLGVVG  131

Query  144  AIVPWNFPVLLAVGKIVPAVYTGNTVIVKPSPFTPYCGLKLAELAAQC-FPPGVVQALSG  202
            AI PWNFP+LL   KI PA+  GNTV++KPS  TP   L LAEL  +   P GV+  ++G
Sbjct  132  AITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTG  191

Query  203  -GDDLGPMITEHPGIDKISFTGSILTGKRVMASCAKTLKRVTLELGGNDPAIVCDDVNID  261
             G ++G  + EHP + K+SFTGS   G+ +  + A+ LKRVTLELGG +P IV +D ++D
Sbjct  192  SGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIVLEDADLD  251

Query  262  AVIPKLMRIRLTFAKIGILSFLCSSQICMMVKRLYVHEKIYDEFREKLVAFVGSLKVGEG  321
            A +   +     F      +F  + Q+C    RL VHE IYDEF EKLV     LKVG+ 
Sbjct  252  AAVEAAV-----FG-----AFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKLKVGDP  301

Query  322  TDPDVFFGPVQNSMQYDKAKDLWQSLSAEGLTTALGGTIQDSGGYFVPPTIVDNPPESAR  381
             DPD   GP+ +  Q ++     +    EG     GG      GYFV PT++ N     R
Sbjct  302  LDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLDNGYFVEPTVLANVTPDMR  361

Query  382  VVQEEPFAPILPMLKWSDEADVIARANGTDTGLGASVWSKDMTRARRIADQLEAGSVWIN  441
            + QEE F P+L ++++ DE + I  AN T+ GL A V++ D+ RA R+A +LEAG VWIN
Sbjct  362  IAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWIN  421

Query  442  SHFDVSPK-APFGGHKTSGIGTEWGLNGLIGYCNSQT  477
             +        PFGG K SG G E G  GL  Y   +T
Sbjct  422  DYTTGDADGLPFGGFKQSGFGREGGPYGLEEYTEVKT  458



Lambda      K        H        a         alpha
   0.318    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595027938


Query= TCONS_00029484

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  436     2e-152


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 436 bits (1124),  Expect = 2e-152, Method: Composition-based stats.
 Identities = 159/394 (40%), Positives = 214/394 (54%), Gaps = 15/394 (4%)

Query  1    MTQEQGKPLSQSTVEVGMAVQWARTIPT--IEIPETVIEDTDEHQIIQRYTPLGVCGAIV  58
             T E GKPL+++  EV  A+   R        +    +          R  PLGV GAI 
Sbjct  75   ETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSDPGRLAYTRREPLGVVGAIT  134

Query  59   PWNFPVLLAVGKIVPAVYTGNTVIVKPSPFTPYCGLKLAELAAQC-FPPGVVQALSG-GD  116
            PWNFP+LL   KI PA+  GNTV++KPS  TP   L LAEL  +   P GV+  ++G G 
Sbjct  135  PWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGA  194

Query  117  DLGPMITEHPGIDKISFTGSILTGKRVMASCAKTLKRVTLELGGNDPAIVCDDVNIDAVI  176
            ++G  + EHP + K+SFTGS   G+ +  + A+ LKRVTLELGG +P IV +D ++DA +
Sbjct  195  EVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIVLEDADLDAAV  254

Query  177  PKLMRIRLTFAKIGILSFLCSSQICMMVKRLYVHEKIYDEFREKLVAFVGSLKVGEGTDP  236
               +     F      +F  + Q+C    RL VHE IYDEF EKLV     LKVG+  DP
Sbjct  255  EAAV-----FG-----AFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKLKVGDPLDP  304

Query  237  DVFFGPVQNSMQYDKAKDLWQSLSAEGLTTALGGTIQDSGGYFVPPTIVDNPPESARVVQ  296
            D   GP+ +  Q ++     +    EG     GG      GYFV PT++ N     R+ Q
Sbjct  305  DTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLDNGYFVEPTVLANVTPDMRIAQ  364

Query  297  EEPFAPILPMLKWSDEADVIARANGTDTGLGASVWSKDMTRARRIADQLEAGSVWINSHF  356
            EE F P+L ++++ DE + I  AN T+ GL A V++ D+ RA R+A +LEAG VWIN + 
Sbjct  365  EEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYT  424

Query  357  DVSPK-APFGGHKTSGIGTEWGLNGLIGYCNSQT  389
                   PFGG K SG G E G  GL  Y   +T
Sbjct  425  TGDADGLPFGGFKQSGFGREGGPYGLEEYTEVKT  458



Lambda      K        H        a         alpha
   0.319    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00029485

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00029487

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            94.4    3e-22


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 94.4 bits (235),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 56/299 (19%), Positives = 111/299 (37%), Gaps = 25/299 (8%)

Query  84   MILTYFLQALDKGTLSFASIMGIRTDLHLQNGQKYSWLTTCIYIAVLIVEYPTNWIIQRV  143
            + L  FL AL +  L  A  + +  DL +   +    L T   +   + +     +  R 
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTE-IGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  144  PIAKYLGINICLWGSVLALHAASKNFTHMVVLRTLLGIFEACCQPTFVLLSSMWYKREEQ  203
               + L I + L+   L L   + +   ++VLR L G+      P  + L + W+  EE+
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  204  AATVTYWYMMNGGQQIVGGLLAYCFSLIGKDKAIHSWQALFITYGVISVLWGLFVIFWMP  263
               +       G    +G LL     L+    ++  W+A F+   ++S+L  + ++   P
Sbjct  120  GRALGLVSAGFGLGAALGPLLG---GLLA---SLFGWRAAFLILAILSLLAAVLLLLPRP  173

Query  264  DSPMRAKCFSEEDKHLMVERVRANQTGMQNKKFRAYQMWEAFRDPQMYCYCAIQIFTTLP  323
                +    +EE +  ++   +A                   RDP ++   A+ +     
Sbjct  174  PPESKRPKPAEEARLSLIVAWKA-----------------LLRDPVLWLLLAL-LLFGFA  215

Query  324  TSGLGAFANIIISGFNFTVLQTQLLAMVLGFYIIIVLLGSAWLVKKTGQNLFVMLGFVI  382
              GL  +  +       + L   LL  + G    I  L    L  + G+   ++L  ++
Sbjct  216  FFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLL  274



Lambda      K        H        a         alpha
   0.326    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00029486

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.139    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00029488

Length=212


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00029489

Length=212


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00029490

Length=624
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            110     4e-27


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 110 bits (278),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 68/382 (18%), Positives = 138/382 (36%), Gaps = 38/382 (10%)

Query  84   MILTYFLQALDKGTLSFASIMGIRTDLHLQNGQKYSWLTTCIYIAVLIVEYPTNWIIQRV  143
            + L  FL AL +  L  A  + +  DL +   +    L T   +   + +     +  R 
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTE-IGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  144  PIAKYLGINICLWGSVLALHAASKNFTHMVVLRTLLGIFEACCQPTFVLLSSMWYKREEQ  203
               + L I + L+   L L   + +   ++VLR L G+      P  + L + W+  EE+
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  204  AATVTYWYMMNGGQQIVGGLLAYCFSLIGKDKAIHSWQALFITYGVISVLWGLFVIFWMP  263
               +       G    +G LL     L+    ++  W+A F+   ++S+L  + ++   P
Sbjct  120  GRALGLVSAGFGLGAALGPLLG---GLLA---SLFGWRAAFLILAILSLLAAVLLLLPRP  173

Query  264  DSPMRAKCFSEEDKHLMVERVRANQTGMQNKKFRAYQMWEAFRDPQMYCYCAIQIFTTLP  323
                +    +EE +  ++   +A                   RDP ++   A+ +     
Sbjct  174  PPESKRPKPAEEARLSLIVAWKA-----------------LLRDPVLWLLLAL-LLFGFA  215

Query  324  TSGLGAFANIIISGFNFTVLQTQLLAMVLGFYIIIVLLGSAWLVKKTGQNLFVMLGFVIP  383
              GL  +  +       + L   LL  + G    I  L    L  + G+   ++L  ++ 
Sbjct  216  FFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLL  275

Query  384  APSTDIHDPRSYIGTIVLMTVENKNLGTKVGLLISYYITLSFWSAQTLCLSMVSRNIAGA  443
              +         +G ++L    +        LL+ +   L F +   L   +  +   G 
Sbjct  276  ILAA--------LGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERG-  326

Query  444  TKKSTVVAATFVSWAVGNSIGP  465
                T       + ++G ++GP
Sbjct  327  ----TASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.324    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 795035696


Query= TCONS_00034446

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            105     2e-25


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 105 bits (264),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 70/374 (19%), Positives = 138/374 (37%), Gaps = 32/374 (9%)

Query  1    MILTYFLQALDKGTLSFASIMGIRTDLHLQNGQKYSWLTTCIYIAVLIVEYPTNWIIQRV  60
            + L  FL AL +  L  A  + +  DL +   +    L T   +   + +     +  R 
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTE-IGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  61   PIAKYLGINICLWGSVLALHAASKNFTHMVVLRTLLGIFEACCQPTFVLLSSMWYKREEQ  120
               + L I + L+   L L   + +   ++VLR L G+      P  + L + W+  EE+
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  121  AATVTYWYMMNGGQQIVGGLLAYCFSLIGKDKAIHSWQALFITYGVISVLWGLFVIFWMP  180
               +       G    +G LL     L+    ++  W+A F+   ++S+L  + ++   P
Sbjct  120  GRALGLVSAGFGLGAALGPLLG---GLLA---SLFGWRAAFLILAILSLLAAVLLLLPRP  173

Query  181  DSPMRAKCFSEEDKHLMVERVRANQTGMQNKKFRAYQMWEAFRDPQMYCYCAIQIFTTLP  240
                +    +EE +  ++   +A                   RDP ++   A+ +     
Sbjct  174  PPESKRPKPAEEARLSLIVAWKA-----------------LLRDPVLWLLLAL-LLFGFA  215

Query  241  TSGLGAFANIIISGFNFTVLQTQLLAMVLGFYIIIVLLGSAWLVKKTGQN--LFVMLGFV  298
              GL  +  +       + L   LL  + G    I  L    L  + G+   L + L  +
Sbjct  216  FFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLL  275

Query  299  IPSYIGTIVLMTVENKNLGTKVGLLISYYITLSFWSAQTLCLSMVSRNIAGATKKSTVVA  358
            I + +G ++L    +        LL+ +   L F +   L   +  +   G     T   
Sbjct  276  ILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERG-----TASG  330

Query  359  ATFVSWAVGNSIGP  372
                + ++G ++GP
Sbjct  331  LYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 666189040


Query= TCONS_00029491

Length=1375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425635 pfam00360, PHY, Phytochrome region. Phytochromes are r...  111     2e-28
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  84.5    7e-20
CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  79.7    3e-18
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  64.2    2e-13


>CDD:425635 pfam00360, PHY, Phytochrome region.  Phytochromes are red/far-red 
photochromic biliprotein photoreceptors which regulate 
plant development. They are widely represented in both photosynthetic 
and non-photosynthetic bacteria and are known in a 
variety of fungi. Although sequence similarities are low, this 
domain is structurally related to pfam01590, which is generally 
located immediately N-terminal to this domain. Compared 
with pfam01590, this domain carries an additional tongue-like 
hairpin loop between the fifth beta-sheet and the sixth 
alpha-helix which functions to seal the chromophore pocket 
and stabilize the photoactivated far-red-absorbing state (Pfr). 
The tongue carries a conserved PRxSF motif, from which 
an arginine finger points into the chromophore pocket close 
to ring D forming a salt bridge with a conserved aspartate residue.
Length=178

 Score = 111 bits (279),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 74/149 (50%), Gaps = 7/149 (5%)

Query  585  IIATSDDLLKLFDADYGALSIRNETKLLGKMTHSQEILALLEYLRMQRMNSVVASHHITK  644
            ++  S +LL L  AD  AL        LG+    + I  L ++L     + V ++  +++
Sbjct  22   LVDQSPNLLDLVKADGAALCFGGNLLTLGETPPEEAIRDLAQWLGRNHDSEVFSTDSLSQ  81

Query  645  DFPDLFYAPGFK-HISGMLYVPLSAGGTDFMVFFRRGHLTEIKWAGNP---YDKKPQNGH  700
             +P+   A       SG+L +P+S    +++++FR   +  + W G+P    +  P    
Sbjct  82   AYPE---AAALADVASGLLAIPISRKPGNYLLWFRPEVVRTVNWGGDPHKAVEIDPGGVR  138

Query  701  LEPRKSFQTWRETVLDQSREWTESDVETA  729
            L PRKSF  W+ETV  +S  W+E ++E A
Sbjct  139  LSPRKSFDAWKETVRGRSLPWSEVEIEAA  167


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 84.5 bits (210),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 36/122 (30%), Positives = 63/122 (52%), Gaps = 16/122 (13%)

Query  1219  VLVAEDDPVNSKIVEKRLSKLGHAVILTGNGEECAAAFRRDSTKVDVVLMDIQMPIVDGT  1278
             VL+ +DDP+  +++ + L K G+ V    +G+E     + +  + D++L+DI MP +DG 
Sbjct  1     VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLKEE--RPDLILLDINMPGMDGL  58

Query  1279  ESTRMIRQFEQEFQPPLSEKASRNGHVPVFAVSASLLEKDAQLYIEAGFDGWIMKPINFN  1338
             E  + IR+              R+   PV  ++A   E DA   +EAG D ++ KP + +
Sbjct  59    ELLKRIRR--------------RDPTTPVIILTAHGDEDDAVEALEAGADDFLSKPFDPD  104

Query  1339  RL  1340
              L
Sbjct  105   EL  106


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 79.7 bits (197),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 27/135 (20%)

Query  867   GDQRRVRQVFTNLISNAVRHTTAGSVTTEIWRSLEQAQPGCVVVQMTVLDTGSGMSQSTL  926
             GD+ R+RQV +NL+ NA++H        EI  +L +       + +TV D G G+    L
Sbjct  1     GDELRLRQVLSNLLDNALKHAAKA---GEITVTLSEGG----ELTLTVEDNGIGIPPEDL  53

Query  927   EALFQELEQVSTDDDNYWFDPEDQTHPLDSCSQDKRVLGLGLALVARIVRNMHGQLSVRS  986
               +F+                                 GLGL++V ++V  + G ++V S
Sbjct  54    PRIFEPFSTADKRG--------------------GGGTGLGLSIVRKLVELLGGTITVES  93

Query  987   EKGKGSYFEISLNFP  1001
             E G G+   ++L   
Sbjct  94    EPGGGTTVTLTLPLA  108


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 64.2 bits (157),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 28/64 (44%), Positives = 39/64 (61%), Gaps = 0/64 (0%)

Query  757  RLLLANSAHEFRTPLNAVINYLEIALEGSLDPETRDNLTKSYSASKSLIYVINDLLDLTN  816
               LAN +HE RTPL A+  YLE+  +  LD E R+ L     +++ L+ +INDLLDL+ 
Sbjct  3    SEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQREYLETILRSAERLLRLINDLLDLSR  62

Query  817  AEKG  820
             E G
Sbjct  63   IEAG  66



Lambda      K        H        a         alpha
   0.315    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1757918200


Query= TCONS_00034447

Length=1375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425635 pfam00360, PHY, Phytochrome region. Phytochromes are r...  111     2e-28
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  84.5    7e-20
CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  79.7    3e-18
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  64.2    2e-13


>CDD:425635 pfam00360, PHY, Phytochrome region.  Phytochromes are red/far-red 
photochromic biliprotein photoreceptors which regulate 
plant development. They are widely represented in both photosynthetic 
and non-photosynthetic bacteria and are known in a 
variety of fungi. Although sequence similarities are low, this 
domain is structurally related to pfam01590, which is generally 
located immediately N-terminal to this domain. Compared 
with pfam01590, this domain carries an additional tongue-like 
hairpin loop between the fifth beta-sheet and the sixth 
alpha-helix which functions to seal the chromophore pocket 
and stabilize the photoactivated far-red-absorbing state (Pfr). 
The tongue carries a conserved PRxSF motif, from which 
an arginine finger points into the chromophore pocket close 
to ring D forming a salt bridge with a conserved aspartate residue.
Length=178

 Score = 111 bits (279),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 74/149 (50%), Gaps = 7/149 (5%)

Query  585  IIATSDDLLKLFDADYGALSIRNETKLLGKMTHSQEILALLEYLRMQRMNSVVASHHITK  644
            ++  S +LL L  AD  AL        LG+    + I  L ++L     + V ++  +++
Sbjct  22   LVDQSPNLLDLVKADGAALCFGGNLLTLGETPPEEAIRDLAQWLGRNHDSEVFSTDSLSQ  81

Query  645  DFPDLFYAPGFK-HISGMLYVPLSAGGTDFMVFFRRGHLTEIKWAGNP---YDKKPQNGH  700
             +P+   A       SG+L +P+S    +++++FR   +  + W G+P    +  P    
Sbjct  82   AYPE---AAALADVASGLLAIPISRKPGNYLLWFRPEVVRTVNWGGDPHKAVEIDPGGVR  138

Query  701  LEPRKSFQTWRETVLDQSREWTESDVETA  729
            L PRKSF  W+ETV  +S  W+E ++E A
Sbjct  139  LSPRKSFDAWKETVRGRSLPWSEVEIEAA  167


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 84.5 bits (210),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 36/122 (30%), Positives = 63/122 (52%), Gaps = 16/122 (13%)

Query  1219  VLVAEDDPVNSKIVEKRLSKLGHAVILTGNGEECAAAFRRDSTKVDVVLMDIQMPIVDGT  1278
             VL+ +DDP+  +++ + L K G+ V    +G+E     + +  + D++L+DI MP +DG 
Sbjct  1     VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLKEE--RPDLILLDINMPGMDGL  58

Query  1279  ESTRMIRQFEQEFQPPLSEKASRNGHVPVFAVSASLLEKDAQLYIEAGFDGWIMKPINFN  1338
             E  + IR+              R+   PV  ++A   E DA   +EAG D ++ KP + +
Sbjct  59    ELLKRIRR--------------RDPTTPVIILTAHGDEDDAVEALEAGADDFLSKPFDPD  104

Query  1339  RL  1340
              L
Sbjct  105   EL  106


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 79.7 bits (197),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 27/135 (20%)

Query  867   GDQRRVRQVFTNLISNAVRHTTAGSVTTEIWRSLEQAQPGCVVVQMTVLDTGSGMSQSTL  926
             GD+ R+RQV +NL+ NA++H        EI  +L +       + +TV D G G+    L
Sbjct  1     GDELRLRQVLSNLLDNALKHAAKA---GEITVTLSEGG----ELTLTVEDNGIGIPPEDL  53

Query  927   EALFQELEQVSTDDDNYWFDPEDQTHPLDSCSQDKRVLGLGLALVARIVRNMHGQLSVRS  986
               +F+                                 GLGL++V ++V  + G ++V S
Sbjct  54    PRIFEPFSTADKRG--------------------GGGTGLGLSIVRKLVELLGGTITVES  93

Query  987   EKGKGSYFEISLNFP  1001
             E G G+   ++L   
Sbjct  94    EPGGGTTVTLTLPLA  108


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 64.2 bits (157),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 28/64 (44%), Positives = 39/64 (61%), Gaps = 0/64 (0%)

Query  757  RLLLANSAHEFRTPLNAVINYLEIALEGSLDPETRDNLTKSYSASKSLIYVINDLLDLTN  816
               LAN +HE RTPL A+  YLE+  +  LD E R+ L     +++ L+ +INDLLDL+ 
Sbjct  3    SEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQREYLETILRSAERLLRLINDLLDLSR  62

Query  817  AEKG  820
             E G
Sbjct  63   IEAG  66



Lambda      K        H        a         alpha
   0.315    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1757918200


Query= TCONS_00029492

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00029493

Length=363


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00029494

Length=1375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425635 pfam00360, PHY, Phytochrome region. Phytochromes are r...  111     2e-28
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  84.5    7e-20
CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  79.7    3e-18
CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) doma...  64.2    2e-13


>CDD:425635 pfam00360, PHY, Phytochrome region.  Phytochromes are red/far-red 
photochromic biliprotein photoreceptors which regulate 
plant development. They are widely represented in both photosynthetic 
and non-photosynthetic bacteria and are known in a 
variety of fungi. Although sequence similarities are low, this 
domain is structurally related to pfam01590, which is generally 
located immediately N-terminal to this domain. Compared 
with pfam01590, this domain carries an additional tongue-like 
hairpin loop between the fifth beta-sheet and the sixth 
alpha-helix which functions to seal the chromophore pocket 
and stabilize the photoactivated far-red-absorbing state (Pfr). 
The tongue carries a conserved PRxSF motif, from which 
an arginine finger points into the chromophore pocket close 
to ring D forming a salt bridge with a conserved aspartate residue.
Length=178

 Score = 111 bits (279),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 74/149 (50%), Gaps = 7/149 (5%)

Query  585  IIATSDDLLKLFDADYGALSIRNETKLLGKMTHSQEILALLEYLRMQRMNSVVASHHITK  644
            ++  S +LL L  AD  AL        LG+    + I  L ++L     + V ++  +++
Sbjct  22   LVDQSPNLLDLVKADGAALCFGGNLLTLGETPPEEAIRDLAQWLGRNHDSEVFSTDSLSQ  81

Query  645  DFPDLFYAPGFK-HISGMLYVPLSAGGTDFMVFFRRGHLTEIKWAGNP---YDKKPQNGH  700
             +P+   A       SG+L +P+S    +++++FR   +  + W G+P    +  P    
Sbjct  82   AYPE---AAALADVASGLLAIPISRKPGNYLLWFRPEVVRTVNWGGDPHKAVEIDPGGVR  138

Query  701  LEPRKSFQTWRETVLDQSREWTESDVETA  729
            L PRKSF  W+ETV  +S  W+E ++E A
Sbjct  139  LSPRKSFDAWKETVRGRSLPWSEVEIEAA  167


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 84.5 bits (210),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 36/122 (30%), Positives = 63/122 (52%), Gaps = 16/122 (13%)

Query  1219  VLVAEDDPVNSKIVEKRLSKLGHAVILTGNGEECAAAFRRDSTKVDVVLMDIQMPIVDGT  1278
             VL+ +DDP+  +++ + L K G+ V    +G+E     + +  + D++L+DI MP +DG 
Sbjct  1     VLIVDDDPLIRELLRQLLEKEGYVVAEADDGKEALELLKEE--RPDLILLDINMPGMDGL  58

Query  1279  ESTRMIRQFEQEFQPPLSEKASRNGHVPVFAVSASLLEKDAQLYIEAGFDGWIMKPINFN  1338
             E  + IR+              R+   PV  ++A   E DA   +EAG D ++ KP + +
Sbjct  59    ELLKRIRR--------------RDPTTPVIILTAHGDEDDAVEALEAGADDFLSKPFDPD  104

Query  1339  RL  1340
              L
Sbjct  105   EL  106


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 79.7 bits (197),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 27/135 (20%)

Query  867   GDQRRVRQVFTNLISNAVRHTTAGSVTTEIWRSLEQAQPGCVVVQMTVLDTGSGMSQSTL  926
             GD+ R+RQV +NL+ NA++H        EI  +L +       + +TV D G G+    L
Sbjct  1     GDELRLRQVLSNLLDNALKHAAKA---GEITVTLSEGG----ELTLTVEDNGIGIPPEDL  53

Query  927   EALFQELEQVSTDDDNYWFDPEDQTHPLDSCSQDKRVLGLGLALVARIVRNMHGQLSVRS  986
               +F+                                 GLGL++V ++V  + G ++V S
Sbjct  54    PRIFEPFSTADKRG--------------------GGGTGLGLSIVRKLVELLGGTITVES  93

Query  987   EKGKGSYFEISLNFP  1001
             E G G+   ++L   
Sbjct  94    EPGGGTTVTLTLPLA  108


>CDD:459839 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain.  dimerization 
and phospho-acceptor domain of histidine kinases.
Length=66

 Score = 64.2 bits (157),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 28/64 (44%), Positives = 39/64 (61%), Gaps = 0/64 (0%)

Query  757  RLLLANSAHEFRTPLNAVINYLEIALEGSLDPETRDNLTKSYSASKSLIYVINDLLDLTN  816
               LAN +HE RTPL A+  YLE+  +  LD E R+ L     +++ L+ +INDLLDL+ 
Sbjct  3    SEFLANLSHELRTPLTAIRGYLELLRDEKLDEEQREYLETILRSAERLLRLINDLLDLSR  62

Query  817  AEKG  820
             E G
Sbjct  63   IEAG  66



Lambda      K        H        a         alpha
   0.315    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1757918200


Query= TCONS_00029495

Length=323


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00029496

Length=826
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460900 pfam03368, Dicer_dimer, Dicer dimerization domain. Thi...  124     1e-34
CDD:459883 pfam00636, Ribonuclease_3, Ribonuclease III domain         103     1e-26
CDD:434075 pfam14622, Ribonucleas_3_3, Ribonuclease-III-like. Mem...  88.0    4e-21


>CDD:460900 pfam03368, Dicer_dimer, Dicer dimerization domain.  This domain 
is found in members of the Dicer protein family which function 
in RNA interference, an evolutionarily conserved mechanism 
for gene silencing using double-stranded RNA (dsRNA) molecules. 
It is essential for the activity of Dicer. It is a 
divergent double stranded RNA-binding domain. The N-terminal 
alpha helix of this domain is in a different orientation to 
that found in canonical dsRNA-binding domains. This results 
in a change of charge distribution at the potential dsRNA-binding 
surface and in the N- and C-termini of the domain being 
in close proximity. This domain has weak dsRNA-binding activity. 
It mediates heterodimerization of Dicer proteins with 
their respective protein partners.
Length=89

 Score = 124 bits (315),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 56/92 (61%), Gaps = 3/92 (3%)

Query  2   AMAHLHHFCAVLPPQPYVDMRPVFSFETNEDGLLKGTVILPSCVHPKVRRTEGRRWWRTE  61
           A++ L+H+C+ LP   + D+RP +     E G    TV LP      +R  EG   WR++
Sbjct  1   AISLLNHYCSTLPSDEFTDLRPEYEVTEVEGGKFVCTVTLPINSP--LRSIEG-PPWRSK  57

Query  62  RAAMKETAFQAYKSLYEFGLVNDHLLPLTKKP  93
           + A +  AF+A K+L++ GL++DHLLPLTKK 
Sbjct  58  KLAKRSAAFEACKALHKAGLLDDHLLPLTKKK  89


>CDD:459883 pfam00636, Ribonuclease_3, Ribonuclease III domain.  
Length=101

 Score = 103 bits (258),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 43/106 (41%), Positives = 59/106 (56%), Gaps = 5/106 (5%)

Query  392  QRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRDMIVQNPRLAKAALDTGLDAYIVTK  451
            +R EFLGD++L+  V   LF + P+  EG L   R  +V N  LAK A   GL+ ++  +
Sbjct  1    ERLEFLGDAVLELYVREYLFEKFPDLREGDLHRLRSALVSNEALAKLARKLGLEKFLTEE  60

Query  452  RLASRKWSAPLISEKLGRVPAKRQMSTKVLADVVEALIGAAYVDGG  497
             L  R+ +       LG+ P +     KVLAD  EALIGA Y+DGG
Sbjct  61   ELDIRRRNN-----ALGKGPKRADGKEKVLADAFEALIGALYLDGG  101


 Score = 67.3 bits (165),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 29/148 (20%), Positives = 58/148 (39%), Gaps = 47/148 (32%)

Query  572  QRLEYLGDAVLDMVIVSAIFNHRIQRPQGDMTKIKHAVVNANLLAFLCMEFAISEEKLDV  631
            +RLE+LGDAVL++ +   +F       +GD+ +++ A+V+   LA L  +          
Sbjct  1    ERLEFLGDAVLELYVREYLFEKFPDLREGDLHRLRSALVSNEALAKLARKL---------  51

Query  632  AQTSKDSFAVTSSQESVELWRFMRYRGQGLKAARDASLARHRALRDEIASSLLQAPHYPW  691
                              L +F+      ++  R+ +L +     D              
Sbjct  52   -----------------GLEKFLTEEELDIR-RRNNALGKGPKRADG-------------  80

Query  692  HALSRLNADKFFSDIIESVLGAIFVDSG  719
                    +K  +D  E+++GA+++D G
Sbjct  81   -------KEKVLADAFEALIGALYLDGG  101


>CDD:434075 pfam14622, Ribonucleas_3_3, Ribonuclease-III-like.  Members of 
this family are involved in rDNA transcription and rRNA processing. 
They probably also cleave a stem-loop structure at 
the 3' end of U2 snRNA to ensure formation of the correct U2 
3' end; they are involved in polyadenylation-independent transcription 
termination. Some members may be mitochondrial 
ribosomal protein subunit L15, others may be 60S ribosomal protein 
L3.
Length=127

 Score = 88.0 bits (219),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 20/125 (16%)

Query  387  RLTNYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRDMIVQNPRLAKAALDTGLDA  446
            R    +R EFLGD++L+ SVS +  F+ P+  EG L++ R  IV    LA+ A + GL  
Sbjct  17   RKPYNERLEFLGDAVLELSVS-EYLFKKPDLDEGGLTKLRASIVSEESLAEIAREIGLGK  75

Query  447  YIVTKRLASRKWSAPLISEKLGRVPAKRQMS--TKVLADVVEALIGAAYVDGGHSTAQAC  504
            Y+                 +LG+   +   S    +LAD +EALIGA Y+DGG   A+  
Sbjct  76   YL-----------------RLGKGEEETGGSGRESILADALEALIGAIYLDGGFEVAKEF  118

Query  505  IRRFL  509
            I + +
Sbjct  119  ILKKI  123



Lambda      K        H        a         alpha
   0.321    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 1049360734


Query= TCONS_00029497

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00029498

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00029499

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00034451

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427027 pfam02872, 5_nucleotid_C, 5'-nucleotidase, C-terminal ...  139     2e-42


>CDD:427027 pfam02872, 5_nucleotid_C, 5'-nucleotidase, C-terminal domain. 
 
Length=155

 Score = 139 bits (353),  Expect = 2e-42, Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 11/160 (7%)

Query  19   HTTTPLDGRCSVIRSSETNLGNMLADAYRAYYGADIALVNSGSIRCDRIIDPSSSPLHVK  78
             T   L  R       ETNLGN++ADA RA  GADIAL N G IR     D  +  +   
Sbjct  4    TTDVLLFDRRCRTG--ETNLGNLIADAQRAAAGADIALTNGGGIR----ADIPAGEITYG  57

Query  79   DIIEICPFENPVVVKRVSGRALHEALENSVSDL-HVDGRFMQCSGLHVVADWQQQEGHRI  137
            D+  + PF N +VV  ++G  + +ALE+SV       G F+Q SGL    D  +  G+R+
Sbjct  58   DLYTVLPFGNTLVVVELTGSQIKDALEHSVKTSSASPGGFLQVSGLRYTYDPSRPPGNRV  117

Query  138  LQLSLVQSSFAPPKRIIPSQLYSVVMSSFIAAGFDGYTCF  177
              + LV +     K + P + Y+V  + ++A+G DG+   
Sbjct  118  TSICLVING----KPLDPDKTYTVATNDYLASGGDGFPML  153



Lambda      K        H        a         alpha
   0.320    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00034452

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427027 pfam02872, 5_nucleotid_C, 5'-nucleotidase, C-terminal ...  141     3e-40


>CDD:427027 pfam02872, 5_nucleotid_C, 5'-nucleotidase, C-terminal domain. 
 
Length=155

 Score = 141 bits (358),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 11/160 (7%)

Query  338  HTTTPLDGRCSVIRSSETNLGNMLADAYRAYYGADIALVNSGSIRCDRIIDPSSSPLHVK  397
             T   L  R       ETNLGN++ADA RA  GADIAL N G IR     D  +  +   
Sbjct  4    TTDVLLFDRRCRTG--ETNLGNLIADAQRAAAGADIALTNGGGIR----ADIPAGEITYG  57

Query  398  DIIEICPFENPVVVKRVSGRALHEALENSVSDL-HVDGRFMQCSGLHVVADWQQQEGHRI  456
            D+  + PF N +VV  ++G  + +ALE+SV       G F+Q SGL    D  +  G+R+
Sbjct  58   DLYTVLPFGNTLVVVELTGSQIKDALEHSVKTSSASPGGFLQVSGLRYTYDPSRPPGNRV  117

Query  457  LQLSLVQSSFAPPKRIIPSQLYSVVMSSFIAAGFDGYTCF  496
              + LV +     K + P + Y+V  + ++A+G DG+   
Sbjct  118  TSICLVING----KPLDPDKTYTVATNDYLASGGDGFPML  153



Lambda      K        H        a         alpha
   0.321    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00029500

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427027 pfam02872, 5_nucleotid_C, 5'-nucleotidase, C-terminal ...  140     8e-41


>CDD:427027 pfam02872, 5_nucleotid_C, 5'-nucleotidase, C-terminal domain. 
 
Length=155

 Score = 140 bits (354),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 11/160 (7%)

Query  168  HTTTPLDGRCSVIRSSETNLGNMLADAYRAYYGADIALVNSGSIRCDRIIDPSSSPLHVK  227
             T   L  R       ETNLGN++ADA RA  GADIAL N G IR     D  +  +   
Sbjct  4    TTDVLLFDRRCRTG--ETNLGNLIADAQRAAAGADIALTNGGGIR----ADIPAGEITYG  57

Query  228  DIIEICPFENPVVVKRVSGRALHEALENSVSDL-HVDGRFMQCSGLHVVADWQQQEGHRI  286
            D+  + PF N +VV  ++G  + +ALE+SV       G F+Q SGL    D  +  G+R+
Sbjct  58   DLYTVLPFGNTLVVVELTGSQIKDALEHSVKTSSASPGGFLQVSGLRYTYDPSRPPGNRV  117

Query  287  LQLSLVQSSFAPPKRIIPSQLYSVVMSSFIAAGFDGYTCF  326
              + LV +     K + P + Y+V  + ++A+G DG+   
Sbjct  118  TSICLVING----KPLDPDKTYTVATNDYLASGGDGFPML  153



Lambda      K        H        a         alpha
   0.320    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00029501

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427027 pfam02872, 5_nucleotid_C, 5'-nucleotidase, C-terminal ...  141     4e-40


>CDD:427027 pfam02872, 5_nucleotid_C, 5'-nucleotidase, C-terminal domain. 
 
Length=155

 Score = 141 bits (357),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 11/160 (7%)

Query  325  HTTTPLDGRCSVIRSSETNLGNMLADAYRAYYGADIALVNSGSIRCDRIIDPSSSPLHVK  384
             T   L  R       ETNLGN++ADA RA  GADIAL N G IR     D  +  +   
Sbjct  4    TTDVLLFDRRCRTG--ETNLGNLIADAQRAAAGADIALTNGGGIR----ADIPAGEITYG  57

Query  385  DIIEICPFENPVVVKRVSGRALHEALENSVSDL-HVDGRFMQCSGLHVVADWQQQEGHRI  443
            D+  + PF N +VV  ++G  + +ALE+SV       G F+Q SGL    D  +  G+R+
Sbjct  58   DLYTVLPFGNTLVVVELTGSQIKDALEHSVKTSSASPGGFLQVSGLRYTYDPSRPPGNRV  117

Query  444  LQLSLVQSSFAPPKRIIPSQLYSVVMSSFIAAGFDGYTCF  483
              + LV +     K + P + Y+V  + ++A+G DG+   
Sbjct  118  TSICLVING----KPLDPDKTYTVATNDYLASGGDGFPML  153



Lambda      K        H        a         alpha
   0.321    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00029502

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00029503

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00029504

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427027 pfam02872, 5_nucleotid_C, 5'-nucleotidase, C-terminal ...  140     8e-41


>CDD:427027 pfam02872, 5_nucleotid_C, 5'-nucleotidase, C-terminal domain. 
 
Length=155

 Score = 140 bits (354),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 11/160 (7%)

Query  168  HTTTPLDGRCSVIRSSETNLGNMLADAYRAYYGADIALVNSGSIRCDRIIDPSSSPLHVK  227
             T   L  R       ETNLGN++ADA RA  GADIAL N G IR     D  +  +   
Sbjct  4    TTDVLLFDRRCRTG--ETNLGNLIADAQRAAAGADIALTNGGGIR----ADIPAGEITYG  57

Query  228  DIIEICPFENPVVVKRVSGRALHEALENSVSDL-HVDGRFMQCSGLHVVADWQQQEGHRI  286
            D+  + PF N +VV  ++G  + +ALE+SV       G F+Q SGL    D  +  G+R+
Sbjct  58   DLYTVLPFGNTLVVVELTGSQIKDALEHSVKTSSASPGGFLQVSGLRYTYDPSRPPGNRV  117

Query  287  LQLSLVQSSFAPPKRIIPSQLYSVVMSSFIAAGFDGYTCF  326
              + LV +     K + P + Y+V  + ++A+G DG+   
Sbjct  118  TSICLVING----KPLDPDKTYTVATNDYLASGGDGFPML  153



Lambda      K        H        a         alpha
   0.320    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00034453

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00029505

Length=1522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396341 pfam01734, Patatin, Patatin-like phospholipase. This f...  86.5    1e-19
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  82.3    2e-19


>CDD:396341 pfam01734, Patatin, Patatin-like phospholipase.  This family 
consists of various patatin glycoproteins from plants. The patatin 
protein accounts for up to 40% of the total soluble protein 
in potato tubers. Patatin is a storage protein but it 
also has the enzymatic activity of lipid acyl hydrolase, catalyzing 
the cleavage of fatty acids from membrane lipids. Members 
of this family have been found also in vertebrates.
Length=190

 Score = 86.5 bits (214),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 47/181 (26%), Positives = 68/181 (38%), Gaps = 25/181 (14%)

Query  1225  GARGIAHVGVIKALEEAGIPVDIIGGTSIGSFIGALYARDADVVPMY-----GRAKKFAG  1279
             GARG  H+GV+KAL EAGI  D+I GTS G+   AL A   D   +           F  
Sbjct  7     GARGAYHLGVLKALGEAGIRFDVISGTSAGAINAALLALGRDPEEIEDLLLELDLNLFLS  66

Query  1280  RMGSMWRFALDLTYPTVSYTT---GHEFNRGIFKTFGDSQIEDFWLEFYC----------  1326
              +       L L    +       G      + K  GD  +E+                 
Sbjct  67    LIRKRALSLLALLRGLIGEGGLFDGDALRELLRKLLGDLTLEELAARLSLLLVVALRALL  126

Query  1327  -------NTTNISKSRPEYHSSGYVWRYVRASMSLAGLIPPICDEGSMLLDGGYIDNLTV  1379
                     T        +      +   V AS +L G+ PP+  +G + +DGG +DN+ V
Sbjct  127   TVISTALGTRARILLPDDLDDDEDLADAVLASSALPGVFPPVRLDGELYVDGGLVDNVPV  186

Query  1380  D  1380
             +
Sbjct  187   E  187


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 82.3 bits (204),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 28/88 (32%), Positives = 49/88 (56%), Gaps = 0/88 (0%)

Query  859  VQVNAGQVIYRQGDESDAIYLVLNGRLRSVLESPGNKLAVVGEYGQGESVGELEVMTEST  918
                AG+VI+R+GD +D++Y+VL+G+++        +  ++   G G+  GEL ++    
Sbjct  2    RSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGREQILAVLGPGDFFGELALLGGEP  61

Query  919  RPATLHAIRDTELAKFPRSLFNSLAQEH  946
            R AT+ A+ D+EL   PR  F  L +  
Sbjct  62   RSATVVALTDSELLVIPREDFLELLERD  89



Lambda      K        H        a         alpha
   0.318    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1930956926


Query= TCONS_00029506

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domai...  65.5    1e-15


>CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domain.  This 
domain is found in proteins of the YL1 family. These proteins 
have been shown to be DNA-binding and may be a transcription 
factor. This domain is found in proteins that are not YL1 
proteins.
Length=29

 Score = 65.5 bits (161),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 19/29 (66%), Positives = 21/29 (72%), Gaps = 0/29 (0%)

Query  135  YCDITGLPAPYTDPKTRLRYHDKEVFGVI  163
            YCDITGLPA Y DPKT L Y + E + VI
Sbjct  1    YCDITGLPAKYRDPKTGLPYANVEAYKVI  29



Lambda      K        H        a         alpha
   0.311    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00029507

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domai...  65.5    1e-15


>CDD:462412 pfam08265, YL1_C, YL1 nuclear protein C-terminal domain.  This 
domain is found in proteins of the YL1 family. These proteins 
have been shown to be DNA-binding and may be a transcription 
factor. This domain is found in proteins that are not YL1 
proteins.
Length=29

 Score = 65.5 bits (161),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 19/29 (66%), Positives = 21/29 (72%), Gaps = 0/29 (0%)

Query  135  YCDITGLPAPYTDPKTRLRYHDKEVFGVI  163
            YCDITGLPA Y DPKT L Y + E + VI
Sbjct  1    YCDITGLPAKYRDPKTGLPYANVEAYKVI  29



Lambda      K        H        a         alpha
   0.311    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00034455

Length=2003
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460740 pfam02889, Sec63, Sec63 Brl domain. This domain (also ...  414     3e-132
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  122     2e-32 


>CDD:460740 pfam02889, Sec63, Sec63 Brl domain.  This domain (also known 
as the Brl domain) is required for assembly of functional endoplasmic 
reticulum translocons.
Length=307

 Score = 414 bits (1066),  Expect = 3e-132, Method: Composition-based stats.
 Identities = 138/308 (45%), Positives = 201/308 (65%), Gaps = 2/308 (1%)

Query  794   AKDVGRIASQYYVLQTSIEIFNEMMRPRAGEADVLRMISMSGEFDNIQARENESKELDRL  853
               D+GRIAS YY+   +IE FN+ ++P    AD+LR++S + EF+ I  R+ E KEL +L
Sbjct  1     PTDLGRIASHYYISYETIETFNQSLKPNTTLADLLRILSSASEFEQIPVRQEEKKELKKL  60

Query  854   RDEAIQTEVEGGNDSPHAKTNILLQSYISRAKLEDFALVSDMGYVAQNAARICRALFMIA  913
              ++     V+G  + PHAK NILLQ+YISR KL  FALVSDM Y+ QNA RI RALF I 
Sbjct  61    LEKV-PIPVKGDIEDPHAKVNILLQAYISRLKLPGFALVSDMNYILQNAGRILRALFEIL  119

Query  914   LNRRWGYQCQVLLSLCKSIEKQIWPFDHPFHQFDLPQP-ILKNLDEKLPTSSLESMREMD  972
             L++ W       L LCK IE+++W  D P  QF    P ++K L++K   S  + +   D
Sbjct  120   LSKGWLSAALTALDLCKMIEQRMWDSDSPLRQFPGIPPELIKKLEKKGVESVRDILELDD  179

Query  973   VAEIGQLVHNQRMGKTLSKLLDNFPTLSVEAEIAPLNRDVLRIRLSLYPEFSWNDRHHGA  1032
               E+G+L+ N +MGK +++ ++ FP + +EAE+ P+ R VLR+ +++ P+F W+ R HG 
Sbjct  180   AEELGELIRNPKMGKDIAQFVNRFPKIEIEAEVQPITRSVLRVEVTITPDFPWDKRVHGK  239

Query  1033  SEAYWIWVENSETSEIYHHEYFILSRKKLHDEHELNFTIPLSDPLPSQIYVRAISDRWLG  1092
             SE +W+ V +S+ +EI H E F L+++ L  EH+L FT+P SDP P Q++VR ISD WLG
Sbjct  240   SEGFWLVVGDSDGNEILHIERFTLTKRTLAGEHKLEFTVPPSDPGPPQLFVRLISDSWLG  299

Query  1093  AETVTPVS  1100
             A+   P+S
Sbjct  300   ADQEVPIS  307


 Score = 172 bits (438),  Expect = 8e-48, Method: Composition-based stats.
 Identities = 77/284 (27%), Positives = 130/284 (46%), Gaps = 35/284 (12%)

Query  1636  STPFGKIMSYYYLSHKTVRYLMSHAKPNPTFHDVFSWLCSATEFDELPVRHNEDLINAEL  1695
              T  G+I S+YY+S++T+       KPN T  D+   L SA+EF+++PVR  E     +L
Sbjct  1     PTDLGRIASHYYISYETIETFNQSLKPNTTLADLLRILSSASEFEQIPVRQEEKKELKKL  60

Query  1696  ARNLPLSVESMGDLPLWDPHVKAFLLLQAYMSRIDLPISDYVGDQTSVLDQGIRIIQASI  1755
                +P+ V       + DPH K  +LLQAY+SR+ LP    V D   +L    RI++A  
Sbjct  61    LEKVPIPV----KGDIEDPHAKVNILLQAYISRLKLPGFALVSDMNYILQNAGRILRALF  116

Query  1756  DIMAELGYVRACETLVSLLQSIKSARWPEDNALSILPGIEPT--SKLQ--GLPGSLVALS  1811
             +I+   G++ A  T + L + I+   W  D+ L   PGI P    KL+  G+      L 
Sbjct  117   EILLSKGWLSAALTALDLCKMIEQRMWDSDSPLRQFPGIPPELIKKLEKKGVESVRDILE  176

Query  1812  SLPTASVSGLARKLQLPAEFTKAASYLPQVSVSVANVSSTG----ITVSLSRRNPPTNAE  1867
                   +  L R  ++  +  +  +  P++ +       T     + V+++         
Sbjct  177   LDDAEELGELIRNPKMGKDIAQFVNRFPKIEIEAEVQPITRSVLRVEVTIT---------  227

Query  1868  HRVYAPRFPKPQ-----TEGYFLIVCSASADGKDGELLALKRVS  1906
                  P FP  +     +EG++L+V     D    E+L ++R +
Sbjct  228   -----PDFPWDKRVHGKSEGFWLVV----GDSDGNEILHIERFT  262


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 122 bits (309),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 46/177 (26%), Positives = 86/177 (49%), Gaps = 31/177 (18%)

Query  298  ENMLICAPTGAGKTDAAMLTILNTIGKNTVPNPIEQPDAIEFAVQVDDFKIVYVAPMKAL  357
             ++L+ APTG+GKT A +L  L  + K                   +  + + +AP + L
Sbjct  15   RDVLVQAPTGSGKTLAFLLPALEALDKLD-----------------NGPQALVLAPTREL  57

Query  358  AAEVTEKLGKRLAWLGIRVRELTGDMQLTK--REIVETQIIVTTPEKWDVVTRKSTGDTE  415
            A ++ E+L K    LG++V  L G     +   ++    I+V TP +   + ++     +
Sbjct  58   AEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE----RK  113

Query  416  LVQKVRLLIIDEVHMLHDE-RGAVIESLVARTQRQVESTQSLIRIVGLSATLPNYVD  471
            L++ ++LL++DE H L D   G  +E ++ R  ++        +I+ LSATLP  ++
Sbjct  114  LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKR-------QILLLSATLPRNLE  163


 Score = 118 bits (299),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 17/177 (10%)

Query  1144  NPMQTQIFHLLYHTSANVLLGSPTGSGKTVACELAMWWAFREK-PGSKVVYIAPMKALVR  1202
              P+Q +    +     +VL+ +PTGSGKT+A  L    A  +   G + + +AP + L  
Sbjct  1     TPIQAEAIPAILEGR-DVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAE  59

Query  1203  ERVMDWGKRLAAPMGLKLV-ELTGDNTPDTRT-IRDADIIITTPEKWDGISRSWQTRDYV  1260
             +   +  K+L   +GLK+   L GD+  +    ++  DI++ TP +   +    Q R  +
Sbjct  60    QIYEEL-KKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDL---LQERKLL  115

Query  1261  RKVSLVIIDEIHLLGG-DRGPILEIIVSRMNYIASQSKGSVRLMGMS-TACANATDL  1315
             + + L+++DE H L     GP LE I+ R+           +++ +S T   N  DL
Sbjct  116   KNLKLLVLDEAHRLLDMGFGPDLEEILRRLPK-------KRQILLLSATLPRNLEDL  165



Lambda      K        H        a         alpha
   0.318    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2506238772


Query= TCONS_00029508

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.152    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00034456

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.148    0.514    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00029509

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.151    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00029510

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.150    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00029512

Length=322


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00029511

Length=322


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00034458

Length=2003
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460740 pfam02889, Sec63, Sec63 Brl domain. This domain (also ...  414     3e-132
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  122     2e-32 


>CDD:460740 pfam02889, Sec63, Sec63 Brl domain.  This domain (also known 
as the Brl domain) is required for assembly of functional endoplasmic 
reticulum translocons.
Length=307

 Score = 414 bits (1066),  Expect = 3e-132, Method: Composition-based stats.
 Identities = 138/308 (45%), Positives = 201/308 (65%), Gaps = 2/308 (1%)

Query  794   AKDVGRIASQYYVLQTSIEIFNEMMRPRAGEADVLRMISMSGEFDNIQARENESKELDRL  853
               D+GRIAS YY+   +IE FN+ ++P    AD+LR++S + EF+ I  R+ E KEL +L
Sbjct  1     PTDLGRIASHYYISYETIETFNQSLKPNTTLADLLRILSSASEFEQIPVRQEEKKELKKL  60

Query  854   RDEAIQTEVEGGNDSPHAKTNILLQSYISRAKLEDFALVSDMGYVAQNAARICRALFMIA  913
              ++     V+G  + PHAK NILLQ+YISR KL  FALVSDM Y+ QNA RI RALF I 
Sbjct  61    LEKV-PIPVKGDIEDPHAKVNILLQAYISRLKLPGFALVSDMNYILQNAGRILRALFEIL  119

Query  914   LNRRWGYQCQVLLSLCKSIEKQIWPFDHPFHQFDLPQP-ILKNLDEKLPTSSLESMREMD  972
             L++ W       L LCK IE+++W  D P  QF    P ++K L++K   S  + +   D
Sbjct  120   LSKGWLSAALTALDLCKMIEQRMWDSDSPLRQFPGIPPELIKKLEKKGVESVRDILELDD  179

Query  973   VAEIGQLVHNQRMGKTLSKLLDNFPTLSVEAEIAPLNRDVLRIRLSLYPEFSWNDRHHGA  1032
               E+G+L+ N +MGK +++ ++ FP + +EAE+ P+ R VLR+ +++ P+F W+ R HG 
Sbjct  180   AEELGELIRNPKMGKDIAQFVNRFPKIEIEAEVQPITRSVLRVEVTITPDFPWDKRVHGK  239

Query  1033  SEAYWIWVENSETSEIYHHEYFILSRKKLHDEHELNFTIPLSDPLPSQIYVRAISDRWLG  1092
             SE +W+ V +S+ +EI H E F L+++ L  EH+L FT+P SDP P Q++VR ISD WLG
Sbjct  240   SEGFWLVVGDSDGNEILHIERFTLTKRTLAGEHKLEFTVPPSDPGPPQLFVRLISDSWLG  299

Query  1093  AETVTPVS  1100
             A+   P+S
Sbjct  300   ADQEVPIS  307


 Score = 172 bits (438),  Expect = 8e-48, Method: Composition-based stats.
 Identities = 77/284 (27%), Positives = 130/284 (46%), Gaps = 35/284 (12%)

Query  1636  STPFGKIMSYYYLSHKTVRYLMSHAKPNPTFHDVFSWLCSATEFDELPVRHNEDLINAEL  1695
              T  G+I S+YY+S++T+       KPN T  D+   L SA+EF+++PVR  E     +L
Sbjct  1     PTDLGRIASHYYISYETIETFNQSLKPNTTLADLLRILSSASEFEQIPVRQEEKKELKKL  60

Query  1696  ARNLPLSVESMGDLPLWDPHVKAFLLLQAYMSRIDLPISDYVGDQTSVLDQGIRIIQASI  1755
                +P+ V       + DPH K  +LLQAY+SR+ LP    V D   +L    RI++A  
Sbjct  61    LEKVPIPV----KGDIEDPHAKVNILLQAYISRLKLPGFALVSDMNYILQNAGRILRALF  116

Query  1756  DIMAELGYVRACETLVSLLQSIKSARWPEDNALSILPGIEPT--SKLQ--GLPGSLVALS  1811
             +I+   G++ A  T + L + I+   W  D+ L   PGI P    KL+  G+      L 
Sbjct  117   EILLSKGWLSAALTALDLCKMIEQRMWDSDSPLRQFPGIPPELIKKLEKKGVESVRDILE  176

Query  1812  SLPTASVSGLARKLQLPAEFTKAASYLPQVSVSVANVSSTG----ITVSLSRRNPPTNAE  1867
                   +  L R  ++  +  +  +  P++ +       T     + V+++         
Sbjct  177   LDDAEELGELIRNPKMGKDIAQFVNRFPKIEIEAEVQPITRSVLRVEVTIT---------  227

Query  1868  HRVYAPRFPKPQ-----TEGYFLIVCSASADGKDGELLALKRVS  1906
                  P FP  +     +EG++L+V     D    E+L ++R +
Sbjct  228   -----PDFPWDKRVHGKSEGFWLVV----GDSDGNEILHIERFT  262


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 122 bits (309),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 46/177 (26%), Positives = 86/177 (49%), Gaps = 31/177 (18%)

Query  298  ENMLICAPTGAGKTDAAMLTILNTIGKNTVPNPIEQPDAIEFAVQVDDFKIVYVAPMKAL  357
             ++L+ APTG+GKT A +L  L  + K                   +  + + +AP + L
Sbjct  15   RDVLVQAPTGSGKTLAFLLPALEALDKLD-----------------NGPQALVLAPTREL  57

Query  358  AAEVTEKLGKRLAWLGIRVRELTGDMQLTK--REIVETQIIVTTPEKWDVVTRKSTGDTE  415
            A ++ E+L K    LG++V  L G     +   ++    I+V TP +   + ++     +
Sbjct  58   AEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE----RK  113

Query  416  LVQKVRLLIIDEVHMLHDE-RGAVIESLVARTQRQVESTQSLIRIVGLSATLPNYVD  471
            L++ ++LL++DE H L D   G  +E ++ R  ++        +I+ LSATLP  ++
Sbjct  114  LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKR-------QILLLSATLPRNLE  163


 Score = 118 bits (299),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 17/177 (10%)

Query  1144  NPMQTQIFHLLYHTSANVLLGSPTGSGKTVACELAMWWAFREK-PGSKVVYIAPMKALVR  1202
              P+Q +    +     +VL+ +PTGSGKT+A  L    A  +   G + + +AP + L  
Sbjct  1     TPIQAEAIPAILEGR-DVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAE  59

Query  1203  ERVMDWGKRLAAPMGLKLV-ELTGDNTPDTRT-IRDADIIITTPEKWDGISRSWQTRDYV  1260
             +   +  K+L   +GLK+   L GD+  +    ++  DI++ TP +   +    Q R  +
Sbjct  60    QIYEEL-KKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDL---LQERKLL  115

Query  1261  RKVSLVIIDEIHLLGG-DRGPILEIIVSRMNYIASQSKGSVRLMGMS-TACANATDL  1315
             + + L+++DE H L     GP LE I+ R+           +++ +S T   N  DL
Sbjct  116   KNLKLLVLDEAHRLLDMGFGPDLEEILRRLPK-------KRQILLLSATLPRNLEDL  165



Lambda      K        H        a         alpha
   0.318    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2506238772


Query= TCONS_00034457

Length=2003
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460740 pfam02889, Sec63, Sec63 Brl domain. This domain (also ...  414     3e-132
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  122     2e-32 


>CDD:460740 pfam02889, Sec63, Sec63 Brl domain.  This domain (also known 
as the Brl domain) is required for assembly of functional endoplasmic 
reticulum translocons.
Length=307

 Score = 414 bits (1066),  Expect = 3e-132, Method: Composition-based stats.
 Identities = 138/308 (45%), Positives = 201/308 (65%), Gaps = 2/308 (1%)

Query  794   AKDVGRIASQYYVLQTSIEIFNEMMRPRAGEADVLRMISMSGEFDNIQARENESKELDRL  853
               D+GRIAS YY+   +IE FN+ ++P    AD+LR++S + EF+ I  R+ E KEL +L
Sbjct  1     PTDLGRIASHYYISYETIETFNQSLKPNTTLADLLRILSSASEFEQIPVRQEEKKELKKL  60

Query  854   RDEAIQTEVEGGNDSPHAKTNILLQSYISRAKLEDFALVSDMGYVAQNAARICRALFMIA  913
              ++     V+G  + PHAK NILLQ+YISR KL  FALVSDM Y+ QNA RI RALF I 
Sbjct  61    LEKV-PIPVKGDIEDPHAKVNILLQAYISRLKLPGFALVSDMNYILQNAGRILRALFEIL  119

Query  914   LNRRWGYQCQVLLSLCKSIEKQIWPFDHPFHQFDLPQP-ILKNLDEKLPTSSLESMREMD  972
             L++ W       L LCK IE+++W  D P  QF    P ++K L++K   S  + +   D
Sbjct  120   LSKGWLSAALTALDLCKMIEQRMWDSDSPLRQFPGIPPELIKKLEKKGVESVRDILELDD  179

Query  973   VAEIGQLVHNQRMGKTLSKLLDNFPTLSVEAEIAPLNRDVLRIRLSLYPEFSWNDRHHGA  1032
               E+G+L+ N +MGK +++ ++ FP + +EAE+ P+ R VLR+ +++ P+F W+ R HG 
Sbjct  180   AEELGELIRNPKMGKDIAQFVNRFPKIEIEAEVQPITRSVLRVEVTITPDFPWDKRVHGK  239

Query  1033  SEAYWIWVENSETSEIYHHEYFILSRKKLHDEHELNFTIPLSDPLPSQIYVRAISDRWLG  1092
             SE +W+ V +S+ +EI H E F L+++ L  EH+L FT+P SDP P Q++VR ISD WLG
Sbjct  240   SEGFWLVVGDSDGNEILHIERFTLTKRTLAGEHKLEFTVPPSDPGPPQLFVRLISDSWLG  299

Query  1093  AETVTPVS  1100
             A+   P+S
Sbjct  300   ADQEVPIS  307


 Score = 172 bits (438),  Expect = 8e-48, Method: Composition-based stats.
 Identities = 77/284 (27%), Positives = 130/284 (46%), Gaps = 35/284 (12%)

Query  1636  STPFGKIMSYYYLSHKTVRYLMSHAKPNPTFHDVFSWLCSATEFDELPVRHNEDLINAEL  1695
              T  G+I S+YY+S++T+       KPN T  D+   L SA+EF+++PVR  E     +L
Sbjct  1     PTDLGRIASHYYISYETIETFNQSLKPNTTLADLLRILSSASEFEQIPVRQEEKKELKKL  60

Query  1696  ARNLPLSVESMGDLPLWDPHVKAFLLLQAYMSRIDLPISDYVGDQTSVLDQGIRIIQASI  1755
                +P+ V       + DPH K  +LLQAY+SR+ LP    V D   +L    RI++A  
Sbjct  61    LEKVPIPV----KGDIEDPHAKVNILLQAYISRLKLPGFALVSDMNYILQNAGRILRALF  116

Query  1756  DIMAELGYVRACETLVSLLQSIKSARWPEDNALSILPGIEPT--SKLQ--GLPGSLVALS  1811
             +I+   G++ A  T + L + I+   W  D+ L   PGI P    KL+  G+      L 
Sbjct  117   EILLSKGWLSAALTALDLCKMIEQRMWDSDSPLRQFPGIPPELIKKLEKKGVESVRDILE  176

Query  1812  SLPTASVSGLARKLQLPAEFTKAASYLPQVSVSVANVSSTG----ITVSLSRRNPPTNAE  1867
                   +  L R  ++  +  +  +  P++ +       T     + V+++         
Sbjct  177   LDDAEELGELIRNPKMGKDIAQFVNRFPKIEIEAEVQPITRSVLRVEVTIT---------  227

Query  1868  HRVYAPRFPKPQ-----TEGYFLIVCSASADGKDGELLALKRVS  1906
                  P FP  +     +EG++L+V     D    E+L ++R +
Sbjct  228   -----PDFPWDKRVHGKSEGFWLVV----GDSDGNEILHIERFT  262


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 122 bits (309),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 46/177 (26%), Positives = 86/177 (49%), Gaps = 31/177 (18%)

Query  298  ENMLICAPTGAGKTDAAMLTILNTIGKNTVPNPIEQPDAIEFAVQVDDFKIVYVAPMKAL  357
             ++L+ APTG+GKT A +L  L  + K                   +  + + +AP + L
Sbjct  15   RDVLVQAPTGSGKTLAFLLPALEALDKLD-----------------NGPQALVLAPTREL  57

Query  358  AAEVTEKLGKRLAWLGIRVRELTGDMQLTK--REIVETQIIVTTPEKWDVVTRKSTGDTE  415
            A ++ E+L K    LG++V  L G     +   ++    I+V TP +   + ++     +
Sbjct  58   AEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE----RK  113

Query  416  LVQKVRLLIIDEVHMLHDE-RGAVIESLVARTQRQVESTQSLIRIVGLSATLPNYVD  471
            L++ ++LL++DE H L D   G  +E ++ R  ++        +I+ LSATLP  ++
Sbjct  114  LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKR-------QILLLSATLPRNLE  163


 Score = 118 bits (299),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 17/177 (10%)

Query  1144  NPMQTQIFHLLYHTSANVLLGSPTGSGKTVACELAMWWAFREK-PGSKVVYIAPMKALVR  1202
              P+Q +    +     +VL+ +PTGSGKT+A  L    A  +   G + + +AP + L  
Sbjct  1     TPIQAEAIPAILEGR-DVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAE  59

Query  1203  ERVMDWGKRLAAPMGLKLV-ELTGDNTPDTRT-IRDADIIITTPEKWDGISRSWQTRDYV  1260
             +   +  K+L   +GLK+   L GD+  +    ++  DI++ TP +   +    Q R  +
Sbjct  60    QIYEEL-KKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDL---LQERKLL  115

Query  1261  RKVSLVIIDEIHLLGG-DRGPILEIIVSRMNYIASQSKGSVRLMGMS-TACANATDL  1315
             + + L+++DE H L     GP LE I+ R+           +++ +S T   N  DL
Sbjct  116   KNLKLLVLDEAHRLLDMGFGPDLEEILRRLPK-------KRQILLLSATLPRNLEDL  165



Lambda      K        H        a         alpha
   0.318    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 2506238772


Query= TCONS_00029513

Length=2003
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460740 pfam02889, Sec63, Sec63 Brl domain. This domain (also ...  414     3e-132
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  122     2e-32 


>CDD:460740 pfam02889, Sec63, Sec63 Brl domain.  This domain (also known 
as the Brl domain) is required for assembly of functional endoplasmic 
reticulum translocons.
Length=307

 Score = 414 bits (1066),  Expect = 3e-132, Method: Composition-based stats.
 Identities = 138/308 (45%), Positives = 201/308 (65%), Gaps = 2/308 (1%)

Query  794   AKDVGRIASQYYVLQTSIEIFNEMMRPRAGEADVLRMISMSGEFDNIQARENESKELDRL  853
               D+GRIAS YY+   +IE FN+ ++P    AD+LR++S + EF+ I  R+ E KEL +L
Sbjct  1     PTDLGRIASHYYISYETIETFNQSLKPNTTLADLLRILSSASEFEQIPVRQEEKKELKKL  60

Query  854   RDEAIQTEVEGGNDSPHAKTNILLQSYISRAKLEDFALVSDMGYVAQNAARICRALFMIA  913
              ++     V+G  + PHAK NILLQ+YISR KL  FALVSDM Y+ QNA RI RALF I 
Sbjct  61    LEKV-PIPVKGDIEDPHAKVNILLQAYISRLKLPGFALVSDMNYILQNAGRILRALFEIL  119

Query  914   LNRRWGYQCQVLLSLCKSIEKQIWPFDHPFHQFDLPQP-ILKNLDEKLPTSSLESMREMD  972
             L++ W       L LCK IE+++W  D P  QF    P ++K L++K   S  + +   D
Sbjct  120   LSKGWLSAALTALDLCKMIEQRMWDSDSPLRQFPGIPPELIKKLEKKGVESVRDILELDD  179

Query  973   VAEIGQLVHNQRMGKTLSKLLDNFPTLSVEAEIAPLNRDVLRIRLSLYPEFSWNDRHHGA  1032
               E+G+L+ N +MGK +++ ++ FP + +EAE+ P+ R VLR+ +++ P+F W+ R HG 
Sbjct  180   AEELGELIRNPKMGKDIAQFVNRFPKIEIEAEVQPITRSVLRVEVTITPDFPWDKRVHGK  239

Query  1033  SEAYWIWVENSETSEIYHHEYFILSRKKLHDEHELNFTIPLSDPLPSQIYVRAISDRWLG  1092
             SE +W+ V +S+ +EI H E F L+++ L  EH+L FT+P SDP P Q++VR ISD WLG
Sbjct  240   SEGFWLVVGDSDGNEILHIERFTLTKRTLAGEHKLEFTVPPSDPGPPQLFVRLISDSWLG  299

Query  1093  AETVTPVS  1100
             A+   P+S
Sbjct  300   ADQEVPIS  307


 Score = 172 bits (438),  Expect = 8e-48, Method: Composition-based stats.
 Identities = 77/284 (27%), Positives = 130/284 (46%), Gaps = 35/284 (12%)

Query  1636  STPFGKIMSYYYLSHKTVRYLMSHAKPNPTFHDVFSWLCSATEFDELPVRHNEDLINAEL  1695
              T  G+I S+YY+S++T+       KPN T  D+   L SA+EF+++PVR  E     +L
Sbjct  1     PTDLGRIASHYYISYETIETFNQSLKPNTTLADLLRILSSASEFEQIPVRQEEKKELKKL  60

Query  1696  ARNLPLSVESMGDLPLWDPHVKAFLLLQAYMSRIDLPISDYVGDQTSVLDQGIRIIQASI  1755
                +P+ V       + DPH K  +LLQAY+SR+ LP    V D   +L    RI++A  
Sbjct  61    LEKVPIPV----KGDIEDPHAKVNILLQAYISRLKLPGFALVSDMNYILQNAGRILRALF  116

Query  1756  DIMAELGYVRACETLVSLLQSIKSARWPEDNALSILPGIEPT--SKLQ--GLPGSLVALS  1811
             +I+   G++ A  T + L + I+   W  D+ L   PGI P    KL+  G+      L 
Sbjct  117   EILLSKGWLSAALTALDLCKMIEQRMWDSDSPLRQFPGIPPELIKKLEKKGVESVRDILE  176

Query  1812  SLPTASVSGLARKLQLPAEFTKAASYLPQVSVSVANVSSTG----ITVSLSRRNPPTNAE  1867
                   +  L R  ++  +  +  +  P++ +       T     + V+++         
Sbjct  177   LDDAEELGELIRNPKMGKDIAQFVNRFPKIEIEAEVQPITRSVLRVEVTIT---------  227

Query  1868  HRVYAPRFPKPQ-----TEGYFLIVCSASADGKDGELLALKRVS  1906
                  P FP  +     +EG++L+V     D    E+L ++R +
Sbjct  228   -----PDFPWDKRVHGKSEGFWLVV----GDSDGNEILHIERFT  262


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 122 bits (309),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 46/177 (26%), Positives = 86/177 (49%), Gaps = 31/177 (18%)

Query  298  ENMLICAPTGAGKTDAAMLTILNTIGKNTVPNPIEQPDAIEFAVQVDDFKIVYVAPMKAL  357
             ++L+ APTG+GKT A +L  L  + K                   +  + + +AP + L
Sbjct  15   RDVLVQAPTGSGKTLAFLLPALEALDKLD-----------------NGPQALVLAPTREL  57

Query  358  AAEVTEKLGKRLAWLGIRVRELTGDMQLTK--REIVETQIIVTTPEKWDVVTRKSTGDTE  415
            A ++ E+L K    LG++V  L G     +   ++    I+V TP +   + ++     +
Sbjct  58   AEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE----RK  113

Query  416  LVQKVRLLIIDEVHMLHDE-RGAVIESLVARTQRQVESTQSLIRIVGLSATLPNYVD  471
            L++ ++LL++DE H L D   G  +E ++ R  ++        +I+ LSATLP  ++
Sbjct  114  LLKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKKR-------QILLLSATLPRNLE  163


 Score = 118 bits (299),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 17/177 (10%)

Query  1144  NPMQTQIFHLLYHTSANVLLGSPTGSGKTVACELAMWWAFREK-PGSKVVYIAPMKALVR  1202
              P+Q +    +     +VL+ +PTGSGKT+A  L    A  +   G + + +AP + L  
Sbjct  1     TPIQAEAIPAILEGR-DVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAE  59

Query  1203  ERVMDWGKRLAAPMGLKLV-ELTGDNTPDTRT-IRDADIIITTPEKWDGISRSWQTRDYV  1260
             +   +  K+L   +GLK+   L GD+  +    ++  DI++ TP +   +    Q R  +
Sbjct  60    QIYEEL-KKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDL---LQERKLL  115

Query  1261  RKVSLVIIDEIHLLGG-DRGPILEIIVSRMNYIASQSKGSVRLMGMS-TACANATDL  1315
             + + L+++DE H L     GP LE I+ R+           +++ +S T   N  DL
Sbjct  116   KNLKLLVLDEAHRLLDMGFGPDLEEILRRLPK-------KRQILLLSATLPRNLEDL  165



Lambda      K        H        a         alpha
   0.318    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2506238772


Query= TCONS_00034459

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00029515

Length=178
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         116     8e-32


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 116 bits (294),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 45/122 (37%), Positives = 69/122 (57%), Gaps = 4/122 (3%)

Query  1    MVITFACLIPG---DEQTSKGAVFGLFLYMAAFGAAWLPLPWLYPAELSPIKTRAKANAV  57
             VI     + G    +     A+  + L++A F   W P+PW+  +EL P+  R+KA A+
Sbjct  331  FVILGIVALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMAL  390

Query  58   STCSNWLFNFTVVMITPVMVAHIGWG-TYLLFAALNASFIPVIWLFYPETANRSLEEIDL  116
            +T +NWL NF +  + P++   IG G T+ +FA L   FI  ++ F PET  R+LEEID 
Sbjct  391  ATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDE  450

Query  117  IF  118
            +F
Sbjct  451  LF  452



Lambda      K        H        a         alpha
   0.322    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00029516

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00034460

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         171     3e-51


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 171 bits (435),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 74/201 (37%), Positives = 111/201 (55%), Gaps = 7/201 (3%)

Query  1    MLIGSSSQIFQQLGGCNAVIYYLPVLLKESLHQSNDMALLIGGINMIVYSLFATFSWFFI  60
            +LIG   QIFQQL G NA+ YY   +  E+L  S+    L+  I  +V  +F   + F +
Sbjct  255  LLIGVMLQIFQQLTGINAIFYYSTTIF-ENLGLSDSF--LVTIIVGVVNFVFTFIAIFLV  311

Query  61   EKIGRRKLFLGGSFLQTISMVITFACLIPG---DEQTSKGAVFGLFLYMAAFGAAWLPLP  117
            ++ GRR L L G+    I  VI     + G    +     A+  + L++A F   W P+P
Sbjct  312  DRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVP  371

Query  118  WLYPAELSPIKTRAKANAVSTCSNWLFNFTVVMITPVMVAHIGWG-TYLLFAALNASFIP  176
            W+  +EL P+  R+KA A++T +NWL NF +  + P++   IG G T+ +FA L   FI 
Sbjct  372  WVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFII  431

Query  177  VIWLFYPETANRSLEEIDLIF  197
             ++ F PET  R+LEEID +F
Sbjct  432  FVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.324    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00029517

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         93.5    2e-23


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 93.5 bits (233),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query  1    MIFSGAIVMIVGVIIQVTSFVGHIPLLQFFIGRVITGIGNGMNTSTIPTYQAECSKTSNR  60
            ++ +  +  ++G ++Q  +      + Q  +GRV+ GIG G  +   P Y +E +    R
Sbjct  79   LLIANVL-FVIGAVLQGAAKGKW-SVYQLIVGRVLVGIGVGGASVLAPMYISEIAPKKLR  136

Query  61   GLLICIEGGVIAIGTAIAYWIDFGAHYGPDDLVWRFPIAFQIFFGLIIIIGMFFLPDSPR  120
            G L  +    I  G  +AY    G +   +   WR P+  Q+   L++IIG+ FLP+SPR
Sbjct  137  GALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVPALLLIIGLLFLPESPR  196

Query  121  YLISKDRIQEGEYVLAALAG  140
            +L+ K R++E   VLA L G
Sbjct  197  WLVEKGRLEEAREVLAKLRG  216



Lambda      K        H        a         alpha
   0.329    0.146    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00029519

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00029520

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             455     6e-161


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 455 bits (1173),  Expect = 6e-161, Method: Composition-based stats.
 Identities = 149/356 (42%), Positives = 217/356 (61%), Gaps = 19/356 (5%)

Query  41   ARSVMKKTAWAYYSSGADDEITMRENHNAFHKIWFRPRVLVNVENVDFSTTMLGTKVSVP  100
            AR  + + A+ Y   GA DE+T+R N  AF +I  RPRVL +V N D STT+LG ++S+P
Sbjct  1    ARKRLPRFAFDYLDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSNRDLSTTLLGQRLSLP  60

Query  101  FYVTATALGKLGNPEGEVVLTRAAYKHNVIQMIPTLASCSFDEIVDAKQGDQVQWLQLYV  160
            F +    +  L +P+GE+ L RAA    +  ++ T++S S +E+  A       W QLYV
Sbjct  61   FGIAPVGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEV--AAAAGGPLWFQLYV  118

Query  161  NKDRNITKRIVQHAEARGCKGLFITVDAPQLGRREKDMRSKFS------------DVGAS  208
             +DR +T+ +++ AEA G K L +TVD P LGRRE+D+R+ F+                 
Sbjct  119  PRDRELTEDLLERAEAAGYKALVLTVDTPVLGRRERDLRNGFTLPPRLTPRNLLDLALHP  178

Query  209  VQASGGDEVDRSQGAARAISSFIDPSLSWKDIPWFQSITKMPIILKGVQCVEDVLRAVEM  268
              A G      + GAA  + S  DP+L+W D+ W +   K P+++KG+   ED  RAVE 
Sbjct  179  RWALGVLRRGGAGGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAVEA  238

Query  269  GVDGVVLSNHGGRQLEFARSAIEVLAEVMPALRERGWENKIEVYIDGGVRRATDILKALC  328
            GVDG+V+SNHGGRQL+ A + I+ L E++ A+  R     I V +DGG+RR TD+LKAL 
Sbjct  239  GVDGIVVSNHGGRQLDGAPATIDALPEIVAAVGGR-----IPVLVDGGIRRGTDVLKALA  293

Query  329  LGAKGVGIGRPFLFAMSAYGQPGVERAMQLLKDEMEMNMRLIGVSKIEELNPSLID  384
            LGA  V +GRPFL+ ++A G+ GV  A+++L+DE+E  M L+G   I +L PSL+ 
Sbjct  294  LGADAVLLGRPFLYGLAAGGEAGVAHALEILRDELERTMALLGCKSIADLTPSLLR  349



Lambda      K        H        a         alpha
   0.319    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00034461

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             458     7e-161
CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  98.8    6e-26 


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 458 bits (1180),  Expect = 7e-161, Method: Composition-based stats.
 Identities = 149/356 (42%), Positives = 217/356 (61%), Gaps = 19/356 (5%)

Query  121  ARSVMKKTAWAYYSSGADDEITMRENHNAFHKIWFRPRVLVNVENVDFSTTMLGTKVSVP  180
            AR  + + A+ Y   GA DE+T+R N  AF +I  RPRVL +V N D STT+LG ++S+P
Sbjct  1    ARKRLPRFAFDYLDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSNRDLSTTLLGQRLSLP  60

Query  181  FYVTATALGKLGNPEGEVVLTRAAYKHNVIQMIPTLASCSFDEIVDAKQGDQVQWLQLYV  240
            F +    +  L +P+GE+ L RAA    +  ++ T++S S +E+  A       W QLYV
Sbjct  61   FGIAPVGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEV--AAAAGGPLWFQLYV  118

Query  241  NKDRNITKRIVQHAEARGCKGLFITVDAPQLGRREKDMRSKFS------------DVGAS  288
             +DR +T+ +++ AEA G K L +TVD P LGRRE+D+R+ F+                 
Sbjct  119  PRDRELTEDLLERAEAAGYKALVLTVDTPVLGRRERDLRNGFTLPPRLTPRNLLDLALHP  178

Query  289  VQASGGDEVDRSQGAARAISSFIDPSLSWKDIPWFQSITKMPIILKGVQCVEDVLRAVEM  348
              A G      + GAA  + S  DP+L+W D+ W +   K P+++KG+   ED  RAVE 
Sbjct  179  RWALGVLRRGGAGGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAVEA  238

Query  349  GVDGVVLSNHGGRQLEFARSAIEVLAEVMPALRERGWENKIEVYIDGGVRRATDILKALC  408
            GVDG+V+SNHGGRQL+ A + I+ L E++ A+  R     I V +DGG+RR TD+LKAL 
Sbjct  239  GVDGIVVSNHGGRQLDGAPATIDALPEIVAAVGGR-----IPVLVDGGIRRGTDVLKALA  293

Query  409  LGAKGVGIGRPFLFAMSAYGQPGVERAMQLLKDEMEMNMRLIGVSKIEELNPSLID  464
            LGA  V +GRPFL+ ++A G+ GV  A+++L+DE+E  M L+G   I +L PSL+ 
Sbjct  294  LGADAVLLGRPFLYGLAAGGEAGVAHALEILRDELERTMALLGCKSIADLTPSLLR  349


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 98.8 bits (247),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 34/73 (47%), Positives = 47/73 (64%), Gaps = 2/73 (3%)

Query  9   AEVAKHSSKDSCWVIVHGKAYDVTEFLPEHPGGQKIILKYAGKDATEEF-DPIHPRDTLD  67
            E++KH+    CWV ++GK YDVT+FL EHPGG+ +IL  AGKDAT+ F    H  D  +
Sbjct  3   EELSKHNGDGDCWVAINGKVYDVTKFLKEHPGGEDVILSAAGKDATDAFEAIGHSEDAAE  62

Query  68  KYLDRSKHLGEVD  80
           K L +   +GE+ 
Sbjct  63  KLLKKY-RIGELA  74



Lambda      K        H        a         alpha
   0.318    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 619252994


Query= TCONS_00029523

Length=581
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  77.3    1e-16


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 77.3 bits (191),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 41/126 (33%), Positives = 63/126 (50%), Gaps = 18/126 (14%)

Query  115  YVVVRKLGWGHFSTVWLSRDTTTGKHVALKVV--RSAAH-YTETAIDEIKLLNKIVQAKP  171
            Y V+RKLG G F TV+ ++   TGK VA+K +          +  + EIK+L K+     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKL-----  55

Query  172  SHPGRKHVVSLLDSFEHKGPNGVHVCMVFE-VLGENLLGLIKRWNHRGIPMPLVKQITKQ  230
            +HP   ++V L D+FE    +  ++ +V E V G +L  L+             K I KQ
Sbjct  56   NHP---NIVRLYDAFE----DKDNLYLVLEYVEGGSLFDLLSE--KGAFSEREAKFIMKQ  106

Query  231  VLLGLD  236
            +L GL+
Sbjct  107  ILEGLE  112



Lambda      K        H        a         alpha
   0.314    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00029522

Length=581
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  77.3    1e-16


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 77.3 bits (191),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 41/126 (33%), Positives = 63/126 (50%), Gaps = 18/126 (14%)

Query  115  YVVVRKLGWGHFSTVWLSRDTTTGKHVALKVV--RSAAH-YTETAIDEIKLLNKIVQAKP  171
            Y V+RKLG G F TV+ ++   TGK VA+K +          +  + EIK+L K+     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKL-----  55

Query  172  SHPGRKHVVSLLDSFEHKGPNGVHVCMVFE-VLGENLLGLIKRWNHRGIPMPLVKQITKQ  230
            +HP   ++V L D+FE    +  ++ +V E V G +L  L+             K I KQ
Sbjct  56   NHP---NIVRLYDAFE----DKDNLYLVLEYVEGGSLFDLLSE--KGAFSEREAKFIMKQ  106

Query  231  VLLGLD  236
            +L GL+
Sbjct  107  ILEGLE  112



Lambda      K        H        a         alpha
   0.314    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00029521

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             458     7e-161
CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  98.8    6e-26 


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 458 bits (1180),  Expect = 7e-161, Method: Composition-based stats.
 Identities = 149/356 (42%), Positives = 217/356 (61%), Gaps = 19/356 (5%)

Query  121  ARSVMKKTAWAYYSSGADDEITMRENHNAFHKIWFRPRVLVNVENVDFSTTMLGTKVSVP  180
            AR  + + A+ Y   GA DE+T+R N  AF +I  RPRVL +V N D STT+LG ++S+P
Sbjct  1    ARKRLPRFAFDYLDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSNRDLSTTLLGQRLSLP  60

Query  181  FYVTATALGKLGNPEGEVVLTRAAYKHNVIQMIPTLASCSFDEIVDAKQGDQVQWLQLYV  240
            F +    +  L +P+GE+ L RAA    +  ++ T++S S +E+  A       W QLYV
Sbjct  61   FGIAPVGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEV--AAAAGGPLWFQLYV  118

Query  241  NKDRNITKRIVQHAEARGCKGLFITVDAPQLGRREKDMRSKFS------------DVGAS  288
             +DR +T+ +++ AEA G K L +TVD P LGRRE+D+R+ F+                 
Sbjct  119  PRDRELTEDLLERAEAAGYKALVLTVDTPVLGRRERDLRNGFTLPPRLTPRNLLDLALHP  178

Query  289  VQASGGDEVDRSQGAARAISSFIDPSLSWKDIPWFQSITKMPIILKGVQCVEDVLRAVEM  348
              A G      + GAA  + S  DP+L+W D+ W +   K P+++KG+   ED  RAVE 
Sbjct  179  RWALGVLRRGGAGGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAVEA  238

Query  349  GVDGVVLSNHGGRQLEFARSAIEVLAEVMPALRERGWENKIEVYIDGGVRRATDILKALC  408
            GVDG+V+SNHGGRQL+ A + I+ L E++ A+  R     I V +DGG+RR TD+LKAL 
Sbjct  239  GVDGIVVSNHGGRQLDGAPATIDALPEIVAAVGGR-----IPVLVDGGIRRGTDVLKALA  293

Query  409  LGAKGVGIGRPFLFAMSAYGQPGVERAMQLLKDEMEMNMRLIGVSKIEELNPSLID  464
            LGA  V +GRPFL+ ++A G+ GV  A+++L+DE+E  M L+G   I +L PSL+ 
Sbjct  294  LGADAVLLGRPFLYGLAAGGEAGVAHALEILRDELERTMALLGCKSIADLTPSLLR  349


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 98.8 bits (247),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 34/73 (47%), Positives = 47/73 (64%), Gaps = 2/73 (3%)

Query  9   AEVAKHSSKDSCWVIVHGKAYDVTEFLPEHPGGQKIILKYAGKDATEEF-DPIHPRDTLD  67
            E++KH+    CWV ++GK YDVT+FL EHPGG+ +IL  AGKDAT+ F    H  D  +
Sbjct  3   EELSKHNGDGDCWVAINGKVYDVTKFLKEHPGGEDVILSAAGKDATDAFEAIGHSEDAAE  62

Query  68  KYLDRSKHLGEVD  80
           K L +   +GE+ 
Sbjct  63  KLLKKY-RIGELA  74



Lambda      K        H        a         alpha
   0.318    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 619252994


Query= TCONS_00034462

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             455     6e-161


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 455 bits (1173),  Expect = 6e-161, Method: Composition-based stats.
 Identities = 149/356 (42%), Positives = 217/356 (61%), Gaps = 19/356 (5%)

Query  41   ARSVMKKTAWAYYSSGADDEITMRENHNAFHKIWFRPRVLVNVENVDFSTTMLGTKVSVP  100
            AR  + + A+ Y   GA DE+T+R N  AF +I  RPRVL +V N D STT+LG ++S+P
Sbjct  1    ARKRLPRFAFDYLDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSNRDLSTTLLGQRLSLP  60

Query  101  FYVTATALGKLGNPEGEVVLTRAAYKHNVIQMIPTLASCSFDEIVDAKQGDQVQWLQLYV  160
            F +    +  L +P+GE+ L RAA    +  ++ T++S S +E+  A       W QLYV
Sbjct  61   FGIAPVGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEV--AAAAGGPLWFQLYV  118

Query  161  NKDRNITKRIVQHAEARGCKGLFITVDAPQLGRREKDMRSKFS------------DVGAS  208
             +DR +T+ +++ AEA G K L +TVD P LGRRE+D+R+ F+                 
Sbjct  119  PRDRELTEDLLERAEAAGYKALVLTVDTPVLGRRERDLRNGFTLPPRLTPRNLLDLALHP  178

Query  209  VQASGGDEVDRSQGAARAISSFIDPSLSWKDIPWFQSITKMPIILKGVQCVEDVLRAVEM  268
              A G      + GAA  + S  DP+L+W D+ W +   K P+++KG+   ED  RAVE 
Sbjct  179  RWALGVLRRGGAGGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAVEA  238

Query  269  GVDGVVLSNHGGRQLEFARSAIEVLAEVMPALRERGWENKIEVYIDGGVRRATDILKALC  328
            GVDG+V+SNHGGRQL+ A + I+ L E++ A+  R     I V +DGG+RR TD+LKAL 
Sbjct  239  GVDGIVVSNHGGRQLDGAPATIDALPEIVAAVGGR-----IPVLVDGGIRRGTDVLKALA  293

Query  329  LGAKGVGIGRPFLFAMSAYGQPGVERAMQLLKDEMEMNMRLIGVSKIEELNPSLID  384
            LGA  V +GRPFL+ ++A G+ GV  A+++L+DE+E  M L+G   I +L PSL+ 
Sbjct  294  LGADAVLLGRPFLYGLAAGGEAGVAHALEILRDELERTMALLGCKSIADLTPSLLR  349



Lambda      K        H        a         alpha
   0.319    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00029524

Length=581
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  77.3    1e-16


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 77.3 bits (191),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 41/126 (33%), Positives = 63/126 (50%), Gaps = 18/126 (14%)

Query  115  YVVVRKLGWGHFSTVWLSRDTTTGKHVALKVV--RSAAH-YTETAIDEIKLLNKIVQAKP  171
            Y V+RKLG G F TV+ ++   TGK VA+K +          +  + EIK+L K+     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKL-----  55

Query  172  SHPGRKHVVSLLDSFEHKGPNGVHVCMVFE-VLGENLLGLIKRWNHRGIPMPLVKQITKQ  230
            +HP   ++V L D+FE    +  ++ +V E V G +L  L+             K I KQ
Sbjct  56   NHP---NIVRLYDAFE----DKDNLYLVLEYVEGGSLFDLLSE--KGAFSEREAKFIMKQ  106

Query  231  VLLGLD  236
            +L GL+
Sbjct  107  ILEGLE  112



Lambda      K        H        a         alpha
   0.314    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00029525

Length=583
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  77.7    9e-17


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 77.7 bits (192),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 41/126 (33%), Positives = 63/126 (50%), Gaps = 18/126 (14%)

Query  117  YVVVRKLGWGHFSTVWLSRDTTTGKHVALKVV--RSAAH-YTETAIDEIKLLNKIVQAKP  173
            Y V+RKLG G F TV+ ++   TGK VA+K +          +  + EIK+L K+     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKL-----  55

Query  174  SHPGRKHVVSLLDSFEHKGPNGVHVCMVFE-VLGENLLGLIKRWNHRGIPMPLVKQITKQ  232
            +HP   ++V L D+FE    +  ++ +V E V G +L  L+             K I KQ
Sbjct  56   NHP---NIVRLYDAFE----DKDNLYLVLEYVEGGSLFDLLSE--KGAFSEREAKFIMKQ  106

Query  233  VLLGLD  238
            +L GL+
Sbjct  107  ILEGLE  112



Lambda      K        H        a         alpha
   0.314    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 733764148


Query= TCONS_00029526

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  76.9    1e-16


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 76.9 bits (190),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 41/126 (33%), Positives = 63/126 (50%), Gaps = 18/126 (14%)

Query  58   YVVVRKLGWGHFSTVWLSRDTTTGKHVALKVV--RSAAH-YTETAIDEIKLLNKIVQAKP  114
            Y V+RKLG G F TV+ ++   TGK VA+K +          +  + EIK+L K+     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKL-----  55

Query  115  SHPGRKHVVSLLDSFEHKGPNGVHVCMVFE-VLGENLLGLIKRWNHRGIPMPLVKQITKQ  173
            +HP   ++V L D+FE    +  ++ +V E V G +L  L+             K I KQ
Sbjct  56   NHP---NIVRLYDAFE----DKDNLYLVLEYVEGGSLFDLLSE--KGAFSEREAKFIMKQ  106

Query  174  VLLGLD  179
            +L GL+
Sbjct  107  ILEGLE  112



Lambda      K        H        a         alpha
   0.315    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00029527

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00029528

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00029529

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462867 pfam09736, Bud13, Pre-mRNA-splicing factor of RES comp...  207     1e-67


>CDD:462867 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex.  This 
entry is characterized by proteins with alternating conserved 
and low-complexity regions. Bud13 together with Snu17p 
and a newly identified factor, Pml1p/Ylr016c, form a novel 
trimeric complex. called The RES complex, pre-mRNA retention 
and splicing complex. Subunits of this complex are not essential 
for viability of yeasts but they are required for efficient 
splicing in vitro and in vivo. Furthermore, inactivation 
of this complex causes pre-mRNA leakage from the nucleus. 
Bud13 contains a unique, phylogenetically conserved C-terminal 
region of unknown function.
Length=144

 Score = 207 bits (529),  Expect = 1e-67, Method: Composition-based stats.
 Identities = 85/144 (59%), Positives = 105/144 (73%), Gaps = 3/144 (2%)

Query  188  ETIYRDASGRIINVALKRAEARRAEQEKREKEEAAKEALMGDVQRAEREARRQQIQEARA  247
            ET+YRD SGR I++  +RAEARR  +E+ EKEE  KE   G VQ+ E E RR++++E ++
Sbjct  1    ETVYRDKSGRRIDIEEERAEARRKAEEEEEKEEKYKEWGKGLVQKEEAEERREELEEEKS  60

Query  248  MPLARTIEDDALNEELKAQQRWNDPAAGFLTKTKGPGVSVT---GKPLYKGAFQPNRYGI  304
             PLAR  +D+ LNEELK Q+RW DP A FLTK K  G   T   GKPLYKG   PNR+GI
Sbjct  61   KPLARYADDEDLNEELKEQERWGDPMAAFLTKKKSKGKKKTGFQGKPLYKGPAPPNRFGI  120

Query  305  RPGHRWDGVDRGNGFEKEWFAARN  328
            RPG+RWDGVDR NGFEK+WF A+N
Sbjct  121  RPGYRWDGVDRSNGFEKKWFKAQN  144



Lambda      K        H        a         alpha
   0.309    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00034463

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462867 pfam09736, Bud13, Pre-mRNA-splicing factor of RES comp...  207     1e-67


>CDD:462867 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex.  This 
entry is characterized by proteins with alternating conserved 
and low-complexity regions. Bud13 together with Snu17p 
and a newly identified factor, Pml1p/Ylr016c, form a novel 
trimeric complex. called The RES complex, pre-mRNA retention 
and splicing complex. Subunits of this complex are not essential 
for viability of yeasts but they are required for efficient 
splicing in vitro and in vivo. Furthermore, inactivation 
of this complex causes pre-mRNA leakage from the nucleus. 
Bud13 contains a unique, phylogenetically conserved C-terminal 
region of unknown function.
Length=144

 Score = 207 bits (529),  Expect = 1e-67, Method: Composition-based stats.
 Identities = 85/144 (59%), Positives = 105/144 (73%), Gaps = 3/144 (2%)

Query  188  ETIYRDASGRIINVALKRAEARRAEQEKREKEEAAKEALMGDVQRAEREARRQQIQEARA  247
            ET+YRD SGR I++  +RAEARR  +E+ EKEE  KE   G VQ+ E E RR++++E ++
Sbjct  1    ETVYRDKSGRRIDIEEERAEARRKAEEEEEKEEKYKEWGKGLVQKEEAEERREELEEEKS  60

Query  248  MPLARTIEDDALNEELKAQQRWNDPAAGFLTKTKGPGVSVT---GKPLYKGAFQPNRYGI  304
             PLAR  +D+ LNEELK Q+RW DP A FLTK K  G   T   GKPLYKG   PNR+GI
Sbjct  61   KPLARYADDEDLNEELKEQERWGDPMAAFLTKKKSKGKKKTGFQGKPLYKGPAPPNRFGI  120

Query  305  RPGHRWDGVDRGNGFEKEWFAARN  328
            RPG+RWDGVDR NGFEK+WF A+N
Sbjct  121  RPGYRWDGVDRSNGFEKKWFKAQN  144



Lambda      K        H        a         alpha
   0.309    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0724    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00034464

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462867 pfam09736, Bud13, Pre-mRNA-splicing factor of RES comp...  207     1e-67


>CDD:462867 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex.  This 
entry is characterized by proteins with alternating conserved 
and low-complexity regions. Bud13 together with Snu17p 
and a newly identified factor, Pml1p/Ylr016c, form a novel 
trimeric complex. called The RES complex, pre-mRNA retention 
and splicing complex. Subunits of this complex are not essential 
for viability of yeasts but they are required for efficient 
splicing in vitro and in vivo. Furthermore, inactivation 
of this complex causes pre-mRNA leakage from the nucleus. 
Bud13 contains a unique, phylogenetically conserved C-terminal 
region of unknown function.
Length=144

 Score = 207 bits (529),  Expect = 1e-67, Method: Composition-based stats.
 Identities = 85/144 (59%), Positives = 105/144 (73%), Gaps = 3/144 (2%)

Query  188  ETIYRDASGRIINVALKRAEARRAEQEKREKEEAAKEALMGDVQRAEREARRQQIQEARA  247
            ET+YRD SGR I++  +RAEARR  +E+ EKEE  KE   G VQ+ E E RR++++E ++
Sbjct  1    ETVYRDKSGRRIDIEEERAEARRKAEEEEEKEEKYKEWGKGLVQKEEAEERREELEEEKS  60

Query  248  MPLARTIEDDALNEELKAQQRWNDPAAGFLTKTKGPGVSVT---GKPLYKGAFQPNRYGI  304
             PLAR  +D+ LNEELK Q+RW DP A FLTK K  G   T   GKPLYKG   PNR+GI
Sbjct  61   KPLARYADDEDLNEELKEQERWGDPMAAFLTKKKSKGKKKTGFQGKPLYKGPAPPNRFGI  120

Query  305  RPGHRWDGVDRGNGFEKEWFAARN  328
            RPG+RWDGVDR NGFEK+WF A+N
Sbjct  121  RPGYRWDGVDRSNGFEKKWFKAQN  144



Lambda      K        H        a         alpha
   0.309    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00029530

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462867 pfam09736, Bud13, Pre-mRNA-splicing factor of RES comp...  207     1e-67


>CDD:462867 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex.  This 
entry is characterized by proteins with alternating conserved 
and low-complexity regions. Bud13 together with Snu17p 
and a newly identified factor, Pml1p/Ylr016c, form a novel 
trimeric complex. called The RES complex, pre-mRNA retention 
and splicing complex. Subunits of this complex are not essential 
for viability of yeasts but they are required for efficient 
splicing in vitro and in vivo. Furthermore, inactivation 
of this complex causes pre-mRNA leakage from the nucleus. 
Bud13 contains a unique, phylogenetically conserved C-terminal 
region of unknown function.
Length=144

 Score = 207 bits (529),  Expect = 1e-67, Method: Composition-based stats.
 Identities = 85/144 (59%), Positives = 105/144 (73%), Gaps = 3/144 (2%)

Query  188  ETIYRDASGRIINVALKRAEARRAEQEKREKEEAAKEALMGDVQRAEREARRQQIQEARA  247
            ET+YRD SGR I++  +RAEARR  +E+ EKEE  KE   G VQ+ E E RR++++E ++
Sbjct  1    ETVYRDKSGRRIDIEEERAEARRKAEEEEEKEEKYKEWGKGLVQKEEAEERREELEEEKS  60

Query  248  MPLARTIEDDALNEELKAQQRWNDPAAGFLTKTKGPGVSVT---GKPLYKGAFQPNRYGI  304
             PLAR  +D+ LNEELK Q+RW DP A FLTK K  G   T   GKPLYKG   PNR+GI
Sbjct  61   KPLARYADDEDLNEELKEQERWGDPMAAFLTKKKSKGKKKTGFQGKPLYKGPAPPNRFGI  120

Query  305  RPGHRWDGVDRGNGFEKEWFAARN  328
            RPG+RWDGVDR NGFEK+WF A+N
Sbjct  121  RPGYRWDGVDRSNGFEKKWFKAQN  144



Lambda      K        H        a         alpha
   0.309    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00034465

Length=458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431057 pfam10104, Brr6_like_C_C, Di-sulfide bridge nucleocyto...  197     2e-62


>CDD:431057 pfam10104, Brr6_like_C_C, Di-sulfide bridge nucleocytoplasmic 
transport domain.  Brr6_like_C_C is the highly conserved C-terminal 
region of a group of proteins found in fungi. It carries 
four highly conserved cysteine residues. It is suggested 
that members of the family interact with each other via di-sulfide 
bridges to form a complex which is involved in nucleocytoplasmic 
transport. Brr6 in yeast is an essential integral 
membrane protein of the NE-ER, wit two predicted transmembrane 
domains, and is a dosage suppressor of Apq12, pfam12716.
Length=133

 Score = 197 bits (502),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 64/133 (48%), Positives = 92/133 (69%), Gaps = 1/133 (1%)

Query  231  SWWAQLVVNLSLFSLAVYVVFGFVSAIRAEFEQAAEEVSDTILAEMAVCAKSYVDNKCAG  290
            S + QL+ NL L S+ +Y+V+ FVS IR++ +   EE    +LAE+A C + Y +N+C  
Sbjct  1    SSYLQLLFNLFLVSIILYLVYSFVSTIRSDIDHKIEEYKAELLAEIAECKREYTENRCDP  60

Query  291  GERLPALETICENWERCMNRDPAK-VGRAKVSAHTMAIIINSFIDPISWKAIMFFLATIS  349
            G R+PALE  C+ WE+CMNRDP   VGR+K+SA T+A IINSF++PISWK ++F L  + 
Sbjct  61   GTRVPALEEQCDEWEKCMNRDPTSFVGRSKLSAETLAEIINSFVEPISWKTLIFILLLLL  120

Query  350  TVTVVSNWSFRSF  362
             V  VSN++F  +
Sbjct  121  GVIFVSNFAFGFY  133



Lambda      K        H        a         alpha
   0.316    0.130    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 564403072


Query= TCONS_00034466

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431057 pfam10104, Brr6_like_C_C, Di-sulfide bridge nucleocyto...  173     2e-54


>CDD:431057 pfam10104, Brr6_like_C_C, Di-sulfide bridge nucleocytoplasmic 
transport domain.  Brr6_like_C_C is the highly conserved C-terminal 
region of a group of proteins found in fungi. It carries 
four highly conserved cysteine residues. It is suggested 
that members of the family interact with each other via di-sulfide 
bridges to form a complex which is involved in nucleocytoplasmic 
transport. Brr6 in yeast is an essential integral 
membrane protein of the NE-ER, wit two predicted transmembrane 
domains, and is a dosage suppressor of Apq12, pfam12716.
Length=133

 Score = 173 bits (440),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 57/113 (50%), Positives = 81/113 (72%), Gaps = 1/113 (1%)

Query  231  SWWAQLVVNLSLFSLAVYVVFGFVSAIRAEFEQAAEEVSDTILAEMAVCAKSYVDNKCAG  290
            S + QL+ NL L S+ +Y+V+ FVS IR++ +   EE    +LAE+A C + Y +N+C  
Sbjct  1    SSYLQLLFNLFLVSIILYLVYSFVSTIRSDIDHKIEEYKAELLAEIAECKREYTENRCDP  60

Query  291  GERLPALETICENWERCMNRDPAK-VGRAKVSAHTMAIIINSFIDPISWKAIV  342
            G R+PALE  C+ WE+CMNRDP   VGR+K+SA T+A IINSF++PISWK ++
Sbjct  61   GTRVPALEEQCDEWEKCMNRDPTSFVGRSKLSAETLAEIINSFVEPISWKTLI  113



Lambda      K        H        a         alpha
   0.315    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00029531

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431057 pfam10104, Brr6_like_C_C, Di-sulfide bridge nucleocyto...  197     1e-63


>CDD:431057 pfam10104, Brr6_like_C_C, Di-sulfide bridge nucleocytoplasmic 
transport domain.  Brr6_like_C_C is the highly conserved C-terminal 
region of a group of proteins found in fungi. It carries 
four highly conserved cysteine residues. It is suggested 
that members of the family interact with each other via di-sulfide 
bridges to form a complex which is involved in nucleocytoplasmic 
transport. Brr6 in yeast is an essential integral 
membrane protein of the NE-ER, wit two predicted transmembrane 
domains, and is a dosage suppressor of Apq12, pfam12716.
Length=133

 Score = 197 bits (502),  Expect = 1e-63, Method: Composition-based stats.
 Identities = 64/133 (48%), Positives = 92/133 (69%), Gaps = 1/133 (1%)

Query  129  SWWAQLVVNLSLFSLAVYVVFGFVSAIRAEFEQAAEEVSDTILAEMAVCAKSYVDNKCAG  188
            S + QL+ NL L S+ +Y+V+ FVS IR++ +   EE    +LAE+A C + Y +N+C  
Sbjct  1    SSYLQLLFNLFLVSIILYLVYSFVSTIRSDIDHKIEEYKAELLAEIAECKREYTENRCDP  60

Query  189  GERLPALETICENWERCMNRDPAK-VGRAKVSAHTMAIIINSFIDPISWKAIMFFLATIS  247
            G R+PALE  C+ WE+CMNRDP   VGR+K+SA T+A IINSF++PISWK ++F L  + 
Sbjct  61   GTRVPALEEQCDEWEKCMNRDPTSFVGRSKLSAETLAEIINSFVEPISWKTLIFILLLLL  120

Query  248  TVTVVSNWSFRSF  260
             V  VSN++F  +
Sbjct  121  GVIFVSNFAFGFY  133



Lambda      K        H        a         alpha
   0.317    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00029532

Length=458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431057 pfam10104, Brr6_like_C_C, Di-sulfide bridge nucleocyto...  197     2e-62


>CDD:431057 pfam10104, Brr6_like_C_C, Di-sulfide bridge nucleocytoplasmic 
transport domain.  Brr6_like_C_C is the highly conserved C-terminal 
region of a group of proteins found in fungi. It carries 
four highly conserved cysteine residues. It is suggested 
that members of the family interact with each other via di-sulfide 
bridges to form a complex which is involved in nucleocytoplasmic 
transport. Brr6 in yeast is an essential integral 
membrane protein of the NE-ER, wit two predicted transmembrane 
domains, and is a dosage suppressor of Apq12, pfam12716.
Length=133

 Score = 197 bits (502),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 64/133 (48%), Positives = 92/133 (69%), Gaps = 1/133 (1%)

Query  231  SWWAQLVVNLSLFSLAVYVVFGFVSAIRAEFEQAAEEVSDTILAEMAVCAKSYVDNKCAG  290
            S + QL+ NL L S+ +Y+V+ FVS IR++ +   EE    +LAE+A C + Y +N+C  
Sbjct  1    SSYLQLLFNLFLVSIILYLVYSFVSTIRSDIDHKIEEYKAELLAEIAECKREYTENRCDP  60

Query  291  GERLPALETICENWERCMNRDPAK-VGRAKVSAHTMAIIINSFIDPISWKAIMFFLATIS  349
            G R+PALE  C+ WE+CMNRDP   VGR+K+SA T+A IINSF++PISWK ++F L  + 
Sbjct  61   GTRVPALEEQCDEWEKCMNRDPTSFVGRSKLSAETLAEIINSFVEPISWKTLIFILLLLL  120

Query  350  TVTVVSNWSFRSF  362
             V  VSN++F  +
Sbjct  121  GVIFVSNFAFGFY  133



Lambda      K        H        a         alpha
   0.316    0.130    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 564403072


Query= TCONS_00034467

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431057 pfam10104, Brr6_like_C_C, Di-sulfide bridge nucleocyto...  170     1e-54


>CDD:431057 pfam10104, Brr6_like_C_C, Di-sulfide bridge nucleocytoplasmic 
transport domain.  Brr6_like_C_C is the highly conserved C-terminal 
region of a group of proteins found in fungi. It carries 
four highly conserved cysteine residues. It is suggested 
that members of the family interact with each other via di-sulfide 
bridges to form a complex which is involved in nucleocytoplasmic 
transport. Brr6 in yeast is an essential integral 
membrane protein of the NE-ER, wit two predicted transmembrane 
domains, and is a dosage suppressor of Apq12, pfam12716.
Length=133

 Score = 170 bits (433),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 57/113 (50%), Positives = 81/113 (72%), Gaps = 1/113 (1%)

Query  129  SWWAQLVVNLSLFSLAVYVVFGFVSAIRAEFEQAAEEVSDTILAEMAVCAKSYVDNKCAG  188
            S + QL+ NL L S+ +Y+V+ FVS IR++ +   EE    +LAE+A C + Y +N+C  
Sbjct  1    SSYLQLLFNLFLVSIILYLVYSFVSTIRSDIDHKIEEYKAELLAEIAECKREYTENRCDP  60

Query  189  GERLPALETICENWERCMNRDPAK-VGRAKVSAHTMAIIINSFIDPISWKAIV  240
            G R+PALE  C+ WE+CMNRDP   VGR+K+SA T+A IINSF++PISWK ++
Sbjct  61   GTRVPALEEQCDEWEKCMNRDPTSFVGRSKLSAETLAEIINSFVEPISWKTLI  113



Lambda      K        H        a         alpha
   0.316    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00029533

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family...  579     0.0  


>CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family 20.  Members 
of this family belong to glycosyl transferase family 
20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions 
in the subunits of yeast trehalose-6-phosphate synthase/phosphate 
complex,.
Length=471

 Score = 579 bits (1495),  Expect = 0.0, Method: Composition-based stats.
 Identities = 225/471 (48%), Positives = 327/471 (69%), Gaps = 13/471 (3%)

Query  11   NLIIVSNRLPVSVKRT--DGSYKS--SLSSGGLVTSLSGLTKSTEFRWFGWPGLDVTEKK  66
             L++VSNRLPV+  R   DG ++    +SSGGLV++L+GL+ +TE  W GWPG+ V E +
Sbjct  2    RLVVVSNRLPVTAVRDEEDGKWEFSIKMSSGGLVSALNGLSAATEGVWVGWPGVPVDESE  61

Query  67   DRELVAQSL-DEHNAVAVFLDANLANEHYNKFSNSILWPILHYQ----SGVVYDDGPWQA  121
             ++ V+QSL ++ N V VFL   L + +YN FSNSILWP+ HY     +   +D   W A
Sbjct  62   PKDKVSQSLKEKFNCVPVFLSDELFDSYYNGFSNSILWPLFHYMIPPNNEDAFDRSWWDA  121

Query  122  YRRVNELFADAVAEAATRGSLIWVHDYHLMLLPKLLRQRLNKEKPCAIGFSLHTPFPAGD  181
            Y +VN+LFAD + E    G LIW+HDYHLMLLP++LR+RL   K   IGF LHTPFP+ +
Sbjct  122  YVKVNKLFADKIVEVYKDGDLIWIHDYHLMLLPQMLRKRLPDAK---IGFFLHTPFPSSE  178

Query  182  FWRALPVRNDLLEGMLASDLIGFHTDEYKSNFIQTCAQVLGARTEIPGRIQYKDRLVETD  241
             +R LPVR ++LEG+L +DLIGFHT +Y  +F+  C+++LG  T   G ++Y  R V   
Sbjct  179  IFRCLPVREEILEGLLGADLIGFHTYDYARHFLSCCSRLLGLETRSDGGVEYGGRTVSVK  238

Query  242  KFIVGIDPQKFKDTLQKQEVQDRIKQLEEKY-KGITVIIGVDRLDYIKGLTQKLKGYDHF  300
             F +GIDP + +  L    VQ++IK+L+E++     +I+GVDRLDYIKG+ QKL  ++ F
Sbjct  239  AFPIGIDPGRIESGLASPSVQEKIKELKERFGNKKKLIVGVDRLDYIKGIPQKLLAFERF  298

Query  301  LDRHPELRNKVILIQVAVPSREDVKEYQELETELSTIAGKINGKHSTPDGVPLLYMHRSV  360
            L+ +PE R KV+L+Q+AVPSR DV+EYQ L +++  + G+ING+  T D  P+ ++HR +
Sbjct  299  LEEYPEWRGKVVLVQIAVPSRGDVEEYQNLRSQIEELVGRINGEFGTLDYTPVHFLHRPL  358

Query  361  PFTELTALYSIADACLLTSTRDGMNLVSFEYIACQEQRHGVLVLSEFAGAASFMKEGSIS  420
             F EL ALY++AD CL+TS RDGMNLV++EY+ACQ+ R GVL+LSEFAGAA  + +G+I 
Sbjct  359  DFDELIALYAVADVCLVTSLRDGMNLVAYEYVACQQGRKGVLILSEFAGAAQSLNDGAIL  418

Query  421  FHPANTTELADAVYKAVMMGEDEKKKKYEYLRNFIETNTSARWGETFIDRL  471
             +P +  E+A+A+ +A+ M E+E+KK+++ L  +I  + S  W E+F+  L
Sbjct  419  VNPWDIDEVAEAINEALTMSEEERKKRHKKLYKYISKHDSQHWAESFLSDL  469



Lambda      K        H        a         alpha
   0.319    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 590476040


Query= TCONS_00029534

Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family...  162     8e-50


>CDD:425972 pfam00982, Glyco_transf_20, Glycosyltransferase family 20.  Members 
of this family belong to glycosyl transferase family 
20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions 
in the subunits of yeast trehalose-6-phosphate synthase/phosphate 
complex,.
Length=471

 Score = 162 bits (412),  Expect = 8e-50, Method: Composition-based stats.
 Identities = 57/116 (49%), Positives = 86/116 (74%), Gaps = 0/116 (0%)

Query  1    MHRSVPFTELTALYSIADACLLTSTRDGMNLVSFEYIACQEQRHGVLVLSEFAGAASFMK  60
            +HR + F EL ALY++AD CL+TS RDGMNLV++EY+ACQ+ R GVL+LSEFAGAA  + 
Sbjct  354  LHRPLDFDELIALYAVADVCLVTSLRDGMNLVAYEYVACQQGRKGVLILSEFAGAAQSLN  413

Query  61   EGSISFHPANTTELADAVYKAVMMGEDEKKKKYEYLRNFIETNTSARWGETFIDRL  116
            +G+I  +P +  E+A+A+ +A+ M E+E+KK+++ L  +I  + S  W E+F+  L
Sbjct  414  DGAILVNPWDIDEVAEAINEALTMSEEERKKRHKKLYKYISKHDSQHWAESFLSDL  469



Lambda      K        H        a         alpha
   0.319    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00034468

Length=229


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00029535

Length=449


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 550599736


Query= TCONS_00034469

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00029536

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00029537

Length=217
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395860 pfam01083, Cutinase, Cutinase                              179     5e-58


>CDD:395860 pfam01083, Cutinase, Cutinase.  
Length=173

 Score = 179 bits (456),  Expect = 5e-58, Method: Composition-based stats.
 Identities = 82/179 (46%), Positives = 101/179 (56%), Gaps = 7/179 (4%)

Query  38   PCRDVTFIFARGSTEQGNMGLIVGPGVCSSLKKDLGSDKVACQGVGGAYTAQLAPNFLSQ  97
             C DV  IFARG+TE G +G  VGP V S+L+   GS  VA QGV   Y A L    L  
Sbjct  1    SCPDVHVIFARGTTEPGGLGS-VGPAVVSALESAPGSTSVAVQGVN--YPADLGQ--LYA  55

Query  98   NTNQASINAATDMFDLANTKCPNTKIVAGGYSQGSAVIDNTIQALGSDLKAKVKGVVLFG  157
             +  A  NAA  + + AN+KCP+TKIV GGYSQG+ V+DN I  L + +  KV  VVLFG
Sbjct  56   GSASAGANAAAALINSANSKCPDTKIVLGGYSQGAQVMDNAICGLPAAVADKVAAVVLFG  115

Query  158  FTRNVADKGQIPGYPKDQTKIYCAVGDMVCVNTLIITPAHLTYGADAG-DAAKFLASKV  215
               N      I   P  +T  YC  GD +C  T    PAHL+YG+D    AA F+ SK+
Sbjct  116  DPSNGQGLPGISPLPASKTISYCDAGDPIC-GTGNNLPAHLSYGSDYTTQAAAFVVSKL  173



Lambda      K        H        a         alpha
   0.317    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00029542

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                215     3e-67
CDD:404414 pfam13520, AA_permease_2, Amino acid permease              63.5    8e-12


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 215 bits (549),  Expect = 3e-67, Method: Composition-based stats.
 Identities = 108/240 (45%), Positives = 145/240 (60%), Gaps = 7/240 (3%)

Query  57   HLHMIAIGGIIGPGLLVGSGNALSKGGPAGVLISFSLVGIIVFFVMQSLGEMATLIPVTG  116
            H+ MIA+GG+IG GL VGSG+ L + GPAG L+ + + G+++F VM SLGE++T  PV+G
Sbjct  1    HVQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSG  60

Query  117  SFTEYAQRFIDDSLAFGLGWAYWYLWVTVLANEYNAISLVIGYW---TDAVPQWGWILIF  173
             F  YA RF+  SL F  GW YW  W+TVLA E  A S++I +W    D    W W  +F
Sbjct  61   GFYTYASRFLGPSLGFATGWNYWLSWITVLALELTAASILIQFWELVPDIPYLWVWGAVF  120

Query  174  WFLFLGLSNLGVLAYGEMEFWLSLIKILALIAFFILAVCISTGGIGPQPIGFKYWHDPGP  233
              L   ++ +GV  YGE EFW +LIKI+A+I F I+ + + +GG       F+Y  D G 
Sbjct  121  LVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGG  180

Query  234  FADSING----VARTFVVAGTLYAGTEMVGITAGESANPRKAVPTAIRQVFWRILIFYIG  289
              +   G        FV+A   + G E+VGI AGE  NP K++P AI QV WRI IFYI 
Sbjct  181  KNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYIL  240


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 63.5 bits (155),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 13/220 (6%)

Query  76   GNALSKGGPAGVLISFSLVGIIVFFVMQSLGEMATLIPVTGSFTEYAQRFIDDSLAFGLG  135
               ++ GGPA ++  +    I    V     E+++ +P +G    Y +      +AF  G
Sbjct  22   APLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGGIYVYLENAFGKFVAFLAG  81

Query  136  WAYWYLWVTVLA-NEYNAISLVIGYWTDAVPQWGW------ILIFWFLFLGLSNLGVLAY  188
            W+ W+ +V  LA +   A S ++      +    W      I I     + ++  GV   
Sbjct  82   WSNWFAYVLGLASSASVAASYLLSALGPDLVPTTWLTYGIAIAILIIFAI-INIRGVRES  140

Query  189  GEMEFWLSLIKILALIAFFILAVCISTGGIGPQPIGFKYWHDPGPFADSINGVARTFVVA  248
             +++  L ++K+L  +   I+   + T   G   +    WH    F D   GV   F+  
Sbjct  141  AKIQNILGILKLLLPLILIIILGLV-TADGGGFNLLSGEWHT--FFPDGWPGVFAGFLGV  197

Query  249  GTLYAGTEMVGITAGESANPRKAVPTAIRQVFWRILIFYI  288
               + G E     + E    ++ VP AI      + + YI
Sbjct  198  LWSFTGFESAANVSEE--VKKRNVPKAIFIGVIIVGVLYI  235



Lambda      K        H        a         alpha
   0.325    0.142    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00029539

Length=367
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                281     4e-92
CDD:404414 pfam13520, AA_permease_2, Amino acid permease              75.8    1e-15


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 281 bits (722),  Expect = 4e-92, Method: Composition-based stats.
 Identities = 149/355 (42%), Positives = 212/355 (60%), Gaps = 8/355 (2%)

Query  8    GIIGPGLLVGSGNALSKGGPAGVLISFSLVGIIVFFVMQSLGEMATLIPVTGSFTEYAQR  67
            G+IG GL VGSG+ L + GPAG L+ + + G+++F VM SLGE++T  PV+G F  YA R
Sbjct  9    GVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASR  68

Query  68   FIDDSLAFGLGWAYWYLWVTVLANEYNAISLVIGYW---TDAVPQWGWILIFWFLFLGLS  124
            F+  SL F  GW YW  W+TVLA E  A S++I +W    D    W W  +F  L   ++
Sbjct  69   FLGPSLGFATGWNYWLSWITVLALELTAASILIQFWELVPDIPYLWVWGAVFLVLLTIIN  128

Query  125  NLGVLAYGEMEFWLSLIKILALIAFFILAVCISTGGIGPQPIGFKYWHDPGPFADSING-  183
             +GV  YGE EFW +LIKI+A+I F I+ + + +GG       F+Y  D G   +   G 
Sbjct  129  LVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGF  188

Query  184  ---VARTFVVAGTLYAGTEMVGITAGESANPRKAVPTAIRQVFWRILIFYIGTMFFIGIL  240
                   FV+A   + G E+VGI AGE  NP K++P AI QV WRI IFYI ++  IG+L
Sbjct  189  GKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLL  248

Query  241  LPYNDKRLLGSSSNAASSPLTIALTDAGILPAAHLINALIVISVISAGNGSLYVASRTLL  300
            +P+ND  LL + S +A+SP  I     GI   A LINA+I+ + +SA N SLY  SR L 
Sbjct  249  VPWNDPGLL-NDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLY  307

Query  301  FMARNGKAPRFIGRTNGAGVPWVALIFSNLFTCIVFLTQSSGAGKIYSALITLSG  355
             +AR+G AP+F+ + +  GVP  A++ S + + +  L  S     +++ L+ +SG
Sbjct  308  SLARDGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLASLNPAIVFNFLLAISG  362


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 75.8 bits (187),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 78/346 (23%), Positives = 142/346 (41%), Gaps = 20/346 (6%)

Query  19   GNALSKGGPAGVLISFSLVGIIVFFVMQSLGEMATLIPVTGSFTEYAQRFIDDSLAFGLG  78
               ++ GGPA ++  +    I    V     E+++ +P +G    Y +      +AF  G
Sbjct  22   APLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGGIYVYLENAFGKFVAFLAG  81

Query  79   WAYWYLWVTVLA-NEYNAISLVIGYWTDAVPQWGW------ILIFWFLFLGLSNLGVLAY  131
            W+ W+ +V  LA +   A S ++      +    W      I I     + ++  GV   
Sbjct  82   WSNWFAYVLGLASSASVAASYLLSALGPDLVPTTWLTYGIAIAILIIFAI-INIRGVRES  140

Query  132  GEMEFWLSLIKILALIAFFILAVCISTGGIGPQPIGFKYWHDPGPFADSINGVARTFVVA  191
             +++  L ++K+L  +   I+   + T   G   +    WH    F D   GV   F+  
Sbjct  141  AKIQNILGILKLLLPLILIIILGLV-TADGGGFNLLSGEWHT--FFPDGWPGVFAGFLGV  197

Query  192  GTLYAGTEMVGITAGESANPRKAVPTAIRQVFWRILIFYIGTMFFIGILLPYNDKRLLGS  251
               + G E     + E    ++ VP AI      + + YI        ++P ++  L   
Sbjct  198  LWSFTGFESAANVSEE--VKKRNVPKAIFIGVIIVGVLYILVNIAFFGVVPDDEIALSSG  255

Query  252  SSNAASSPLTIALTDAGILPAAHLINALIVISVISAGNGSLYVASRTLLFMARNGKAP--  309
                A+          G    A ++  L+ +S++ A N ++  ASR L  +AR+G  P  
Sbjct  256  LGQVAALLFQAVGGKWG----AIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFS  311

Query  310  RFIGRTNGAGVPWVALIFSNLFTCIVFLTQSSGAGKIYSALITLSG  355
            RF  + N  G P  A+I + + + I+ L     +   Y+AL++LS 
Sbjct  312  RFFAKVNKFGSPIRAIILTAILSLILLLL-FLLSPAAYNALLSLSA  356



Lambda      K        H        a         alpha
   0.326    0.142    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00034470

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                368     3e-123
CDD:404414 pfam13520, AA_permease_2, Amino acid permease              103     4e-24 


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 368 bits (947),  Expect = 3e-123, Method: Composition-based stats.
 Identities = 186/463 (40%), Positives = 269/463 (58%), Gaps = 14/463 (3%)

Query  57   HLHMIAIGGIIGPGLLVGSGNALSKGGPAGVLISFSLVGIIVFFVMQSLGEMATLIPVTG  116
            H+ MIA+GG+IG GL VGSG+ L + GPAG L+ + + G+++F VM SLGE++T  PV+G
Sbjct  1    HVQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSG  60

Query  117  SFTEYAQRFIDDSLAFGLGWAYWYLWVTVLANEYNAISLVIGYW---TDAVPQWGWILIF  173
             F  YA RF+  SL F  GW YW  W+TVLA E  A S++I +W    D    W W  +F
Sbjct  61   GFYTYASRFLGPSLGFATGWNYWLSWITVLALELTAASILIQFWELVPDIPYLWVWGAVF  120

Query  174  WFLFLGLSNLGVLAYGEMEFWLSLIKILALIAFFILAVCISTGGIGPQPIGFKYWHDPGP  233
              L   ++ +GV  YGE EFW +LIKI+A+I F I+ + + +GG       F+Y  D G 
Sbjct  121  LVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGG  180

Query  234  FADSING----VARTFVVAGTLYAGTEMVGITAGESANPRKAVPTAIRQVFWRILIFYIG  289
              +   G        FV+A   + G E+VGI AGE  NP K++P AI QV WRI IFYI 
Sbjct  181  KNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYIL  240

Query  290  TMFFIGILLPYNDKRLLGSSSNAASSPLTIALTDAGILPAAHLINALIVISVISAGNGSL  349
            ++  IG+L+P+ND  LL + S +A+SP  I     GI   A LINA+I+ + +SA N SL
Sbjct  241  SLLAIGLLVPWNDPGLL-NDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSL  299

Query  350  YVASRTLLFMARNGKAPRFIGRTNGAGVPWVALIFSNLFTCIVFLTQSSGAGKIYSALIT  409
            Y  SR L  +AR+G AP+F+ + +  GVP  A++ S + + +  L  S     +++ L+ 
Sbjct  300  YSGSRMLYSLARDGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLASLNPAIVFNFLLA  359

Query  410  LSGVATFIVWAVIGICHIRFRRALVVQGEDPAKLPFKAWLYPWGTYFSVALNIFLVFFQG  469
            +SG++  IVW +I + H+RFR+A   QG    +LPFKA L P G    +A  I ++  Q 
Sbjct  360  ISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILIIQF  419

Query  470  YTAFL------NPFSADDFVINYILLPVFALFVLGYKFWHKTR  506
              AFL        + A  F   Y+++ +F + ++G K   K  
Sbjct  420  LYAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILIGVKLHVKNW  462


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 103 bits (258),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 86/401 (21%), Positives = 160/401 (40%), Gaps = 28/401 (7%)

Query  76   GNALSKGGPAGVLISFSLVGIIVFFVMQSLGEMATLIPVTGSFTEYAQRFIDDSLAFGLG  135
               ++ GGPA ++  +    I    V     E+++ +P +G    Y +      +AF  G
Sbjct  22   APLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGGIYVYLENAFGKFVAFLAG  81

Query  136  WAYWYLWVTVLA-NEYNAISLVIGYWTDAVPQWGW------ILIFWFLFLGLSNLGVLAY  188
            W+ W+ +V  LA +   A S ++      +    W      I I     + ++  GV   
Sbjct  82   WSNWFAYVLGLASSASVAASYLLSALGPDLVPTTWLTYGIAIAILIIFAI-INIRGVRES  140

Query  189  GEMEFWLSLIKILALIAFFILAVCISTGGIGPQPIGFKYWHDPGPFADSINGVARTFVVA  248
             +++  L ++K+L  +   I+   + T   G   +    WH    F D   GV   F+  
Sbjct  141  AKIQNILGILKLLLPLILIIILGLV-TADGGGFNLLSGEWHT--FFPDGWPGVFAGFLGV  197

Query  249  GTLYAGTEMVGITAGESANPRKAVPTAIRQVFWRILIFYIGTMFFIGILLPYNDKRLLGS  308
               + G E     + E    ++ VP AI      + + YI        ++P ++  L   
Sbjct  198  LWSFTGFESAANVSEE--VKKRNVPKAIFIGVIIVGVLYILVNIAFFGVVPDDEIALSSG  255

Query  309  SSNAASSPLTIALTDAGILPAAHLINALIVISVISAGNGSLYVASRTLLFMARNGKAP--  366
                A+          G    A ++  L+ +S++ A N ++  ASR L  +AR+G  P  
Sbjct  256  LGQVAALLFQAVGGKWG----AIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFS  311

Query  367  RFIGRTNGAGVPWVALIFSNLFTCIVFLTQSSGAGKIYSALITLSGVATFIVWAVIGICH  426
            RF  + N  G P  A+I + + + I+ L     +   Y+AL++LS     + + +  I  
Sbjct  312  RFFAKVNKFGSPIRAIILTAILSLILLLL-FLLSPAAYNALLSLSAYGYLLSYLLPIIGL  370

Query  427  IRFRRALVVQGEDPAKLPFKAWLYPWGTYFSVALNIFLVFF  467
            +  R+     G  P + P           F +  ++FL+  
Sbjct  371  LILRKKRPDLGRIPGRWPV--------AIFGILFSLFLIVA  403



Lambda      K        H        a         alpha
   0.327    0.142    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00034471

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                158     3e-46


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 158 bits (402),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 7/222 (3%)

Query  1    MFFIGILLPYNDKRLLGSSSNAASSPLTIALTDAGILPAAHLINALIVISVISAGNGSLY  60
            +  IG+L+P+ND  LL + S +A+SP  I     GI   A LINA+I+ + +SA N SLY
Sbjct  242  LLAIGLLVPWNDPGLL-NDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLY  300

Query  61   VASRTLLFMARNGKAPRFIGRTNGAGVPWVALIFSNLFTCIVFLTQSSGAGKIYSALITL  120
              SR L  +AR+G AP+F+ + +  GVP  A++ S + + +  L  S     +++ L+ +
Sbjct  301  SGSRMLYSLARDGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLASLNPAIVFNFLLAI  360

Query  121  SGVATFIVWAVIGICHIRFRRALVVQGEDPAKLPFKAWLYPWGTYFSVALNIFLVFFQGY  180
            SG++  IVW +I + H+RFR+A   QG    +LPFKA L P G    +A  I ++  Q  
Sbjct  361  SGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILIIQFL  420

Query  181  TAFL------NPFSADDFVINYILLPVFALFVLGYKFWHKTR  216
             AFL        + A  F   Y+++ +F + ++G K   K  
Sbjct  421  YAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILIGVKLHVKNW  462



Lambda      K        H        a         alpha
   0.327    0.141    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00029540

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                199     8e-61


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 199 bits (507),  Expect = 8e-61, Method: Composition-based stats.
 Identities = 94/249 (38%), Positives = 142/249 (57%), Gaps = 7/249 (3%)

Query  30   ESANPRKAVPTAIRQVFWRILIFYIGTMFFIGILLPYNDKRLLGSSSNAASSPLTIALTD  89
            E  NP K++P AI QV WRI IFYI ++  IG+L+P+ND  LL + S +A+SP  I    
Sbjct  215  EVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPWNDPGLL-NDSASAASPFVIFFKF  273

Query  90   AGILPAAHLINALIVISVISAGNGSLYVASRTLLFMARNGKAPRFIGRTNGAGVPWVALI  149
             GI   A LINA+I+ + +SA N SLY  SR L  +AR+G AP+F+ + +  GVP  A++
Sbjct  274  LGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLARDGLAPKFLKKVDKRGVPLRAIL  333

Query  150  FSNLFTCIVFLTQSSGAGKIYSALITLSGVATFIVWAVIGICHIRFRRALVVQGEDPAKL  209
             S + + +  L  S     +++ L+ +SG++  IVW +I + H+RFR+A   QG    +L
Sbjct  334  VSMVISLLALLLASLNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDEL  393

Query  210  PFKAWLYPWGTYFSVALNIFLVFFQGYTAFL------NPFSADDFVINYILLPVFALFVL  263
            PFKA L P G    +A  I ++  Q   AFL        + A  F   Y+++ +F + ++
Sbjct  394  PFKAPLGPLGVILGLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILI  453

Query  264  GYKFWHKTR  272
            G K   K  
Sbjct  454  GVKLHVKNW  462



Lambda      K        H        a         alpha
   0.327    0.141    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00029541

Length=110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                88.1    2e-22


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 88.1 bits (219),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 44/103 (43%), Positives = 58/103 (56%), Gaps = 4/103 (4%)

Query  1    MEFWLSLIKILALIAFFILAVCISTGGIGPQPIGFKYWHDPGPFADSING----VARTFV  56
             EFW +LIKI+A+I F I+ + + +GG       F+Y  D G   +   G        FV
Sbjct  138  AEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGFGKGFISVFV  197

Query  57   VAGTLYAGTEMVGITAGESANPRKAVPTAIRQVFWRILIFYIG  99
            +A   + G E+VGI AGE  NP K++P AI QV WRI IFYI 
Sbjct  198  IAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYIL  240



Lambda      K        H        a         alpha
   0.326    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00029543

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                355     6e-119
CDD:404414 pfam13520, AA_permease_2, Amino acid permease              90.8    3e-20 


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 355 bits (913),  Expect = 6e-119, Method: Composition-based stats.
 Identities = 181/455 (40%), Positives = 260/455 (57%), Gaps = 14/455 (3%)

Query  8    GIIGPGLLVGSGNALSKGGPAGVLISFSLVGIIVFFVMQSLGEMATLIPVTGSFTEYAQR  67
            G+IG GL VGSG+ L + GPAG L+ + + G+++F VM SLGE++T  PV+G F  YA R
Sbjct  9    GVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASR  68

Query  68   FIDDSLAFGLGWAYWYLWVTVLANEYNAISLVIGYW---TDAVPQWGWILIFWFLFLGLS  124
            F+  SL F  GW YW  W+TVLA E  A S++I +W    D    W W  +F  L   ++
Sbjct  69   FLGPSLGFATGWNYWLSWITVLALELTAASILIQFWELVPDIPYLWVWGAVFLVLLTIIN  128

Query  125  NLGVLAYGEMEFWLSLIKILALIAFFILAVCISTGGIGPQPIGFKYWHDPGPFADSING-  183
             +GV  YGE EFW +LIKI+A+I F I+ + + +GG       F+Y  D G   +   G 
Sbjct  129  LVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGF  188

Query  184  ---VARTFVVAGTLYAGTEMVGITAGESANPRKAVPTAIRQVFWRILIFYIGEKFFIGIL  240
                   FV+A   + G E+VGI AGE  NP K++P AI QV WRI IFYI     IG+L
Sbjct  189  GKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLL  248

Query  241  LPYNDKRLLGSSSNAASSPLTIALTDAGILPAAHLINALIVISVISAGNGSLYVASRTLL  300
            +P+ND  LL + S +A+SP  I     GI   A LINA+I+ + +SA N SLY  SR L 
Sbjct  249  VPWNDPGLL-NDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLY  307

Query  301  FMARNGKAPRFIGRTNGAGVPWVALIFSNLFTCIVFLTQSSGAGKIYSALITLSGVATFI  360
             +AR+G AP+F+ + +  GVP  A++ S + + +  L  S     +++ L+ +SG++  I
Sbjct  308  SLARDGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLASLNPAIVFNFLLAISGLSGLI  367

Query  361  VWAVIGICHIRFRRALVVQGEDPAKLPFKAWLYPWGTYFSVALNIFLVFFQGYTAFL---  417
            VW +I + H+RFR+A   QG    +LPFKA L P G    +A  I ++  Q   AFL   
Sbjct  368  VWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILIIQFLYAFLPVP  427

Query  418  ---NPFSADDFVINYILLPVFALFVLGYKFWHKTR  449
                 + A  F   Y+++ +F + ++G K   K  
Sbjct  428  GGPKNWGAGSFAAAYLIVLLFLIILIGVKLHVKNW  462


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 90.8 bits (226),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 91/411 (22%), Positives = 165/411 (40%), Gaps = 30/411 (7%)

Query  9    IIGPGLLVGSGNALSKGGPAGVLISFSLVGIIVFFVMQSLGEMATLIPVTGSFTEYAQRF  68
            +IG G+ V    A   GGPA ++  +    I    V     E+++ +P +G    Y +  
Sbjct  14   VIGSGIFVAPLVA--SGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGGIYVYLENA  71

Query  69   IDDSLAFGLGWAYWYLWVTVLA-NEYNAISLVIGYWTDAVPQWGW------ILIFWFLFL  121
                +AF  GW+ W+ +V  LA +   A S ++      +    W      I I     +
Sbjct  72   FGKFVAFLAGWSNWFAYVLGLASSASVAASYLLSALGPDLVPTTWLTYGIAIAILIIFAI  131

Query  122  GLSNLGVLAYGEMEFWLSLIKILALIAFFILAVCISTGGIGPQPIGFKYWHDPGPFADSI  181
             ++  GV    +++  L ++K+L  +   I+   + T   G   +    WH    F D  
Sbjct  132  -INIRGVRESAKIQNILGILKLLLPLILIIILGLV-TADGGGFNLLSGEWHT--FFPDGW  187

Query  182  NGVARTFVVAGTLYAGTEMVGITAGESANPRKAVPTAIRQVFWRILIFYIGEKFFIGILL  241
             GV   F+     + G E     + E    ++ VP AI      + + YI        ++
Sbjct  188  PGVFAGFLGVLWSFTGFESAANVSEE--VKKRNVPKAIFIGVIIVGVLYILVNIAFFGVV  245

Query  242  PYNDKRLLGSSSNAASSPLTIALTDAGILPAAHLINALIVISVISAGNGSLYVASRTLLF  301
            P ++  L       A+          G    A ++  L+ +S++ A N ++  ASR L  
Sbjct  246  PDDEIALSSGLGQVAALLFQAVGGKWG----AIIVVILLALSLLGAVNTAIVGASRLLYA  301

Query  302  MARNGKAP--RFIGRTNGAGVPWVALIFSNLFTCIVFLTQSSGAGKIYSALITLSGVATF  359
            +AR+G  P  RF  + N  G P  A+I + + + I+ L     +   Y+AL++LS     
Sbjct  302  LARDGVLPFSRFFAKVNKFGSPIRAIILTAILSLILLLL-FLLSPAAYNALLSLSAYGYL  360

Query  360  IVWAVIGICHIRFRRALVVQGEDPAKLPFKAWLYPWGTYFSVALNIFLVFF  410
            + + +  I  +  R+     G  P + P           F +  ++FL+  
Sbjct  361  LSYLLPIIGLLILRKKRPDLGRIPGRWPV--------AIFGILFSLFLIVA  403



Lambda      K        H        a         alpha
   0.327    0.143    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00029545

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                158     3e-46


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 158 bits (402),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 7/222 (3%)

Query  1    MFFIGILLPYNDKRLLGSSSNAASSPLTIALTDAGILPAAHLINALIVISVISAGNGSLY  60
            +  IG+L+P+ND  LL + S +A+SP  I     GI   A LINA+I+ + +SA N SLY
Sbjct  242  LLAIGLLVPWNDPGLL-NDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLY  300

Query  61   VASRTLLFMARNGKAPRFIGRTNGAGVPWVALIFSNLFTCIVFLTQSSGAGKIYSALITL  120
              SR L  +AR+G AP+F+ + +  GVP  A++ S + + +  L  S     +++ L+ +
Sbjct  301  SGSRMLYSLARDGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLASLNPAIVFNFLLAI  360

Query  121  SGVATFIVWAVIGICHIRFRRALVVQGEDPAKLPFKAWLYPWGTYFSVALNIFLVFFQGY  180
            SG++  IVW +I + H+RFR+A   QG    +LPFKA L P G    +A  I ++  Q  
Sbjct  361  SGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILIIQFL  420

Query  181  TAFL------NPFSADDFVINYILLPVFALFVLGYKFWHKTR  216
             AFL        + A  F   Y+++ +F + ++G K   K  
Sbjct  421  YAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILIGVKLHVKNW  462



Lambda      K        H        a         alpha
   0.327    0.141    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00029544

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                355     4e-119
CDD:404414 pfam13520, AA_permease_2, Amino acid permease              92.8    9e-21 


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 355 bits (914),  Expect = 4e-119, Method: Composition-based stats.
 Identities = 181/455 (40%), Positives = 262/455 (58%), Gaps = 14/455 (3%)

Query  8    GIIGPGLLVGSGNALSKGGPAGVLISFSLVGIIVFFVMQSLGEMATLIPVTGSFTEYAQR  67
            G+IG GL VGSG+ L + GPAG L+ + + G+++F VM SLGE++T  PV+G F  YA R
Sbjct  9    GVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASR  68

Query  68   FIDDSLAFGLGWAYWYLWVTVLANEYNAISLVIGYW---TDAVPQWGWILIFWFLFLGLS  124
            F+  SL F  GW YW  W+TVLA E  A S++I +W    D    W W  +F  L   ++
Sbjct  69   FLGPSLGFATGWNYWLSWITVLALELTAASILIQFWELVPDIPYLWVWGAVFLVLLTIIN  128

Query  125  NLGVLAYGEMEFWLSLIKILALIAFFILAVCISTGGIGPQPIGFKYWHDPGPFADSING-  183
             +GV  YGE EFW +LIKI+A+I F I+ + + +GG       F+Y  D G   +   G 
Sbjct  129  LVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGF  188

Query  184  ---VARTFVVAGTLYAGTEMVGITAGESANPRKAVPTAIRQVFWRILIFYIGTMFFIGIL  240
                   FV+A   + G E+VGI AGE  NP K++P AI QV WRI IFYI ++  IG+L
Sbjct  189  GKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLL  248

Query  241  LPYNDKRLLGSSSNAASSPLTIALTDAGILPAAHLINALIVISVISAGNGSLYVASRTLL  300
            +P+ND  LL + S +A+SP  I     GI   A LINA+I+ + +SA N SLY  SR L 
Sbjct  249  VPWNDPGLL-NDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLY  307

Query  301  FMARNGKAPRFIGRTNGAGVPWVALIFSNLFTCIVFLTQSSGAGKIYSALITLSGVATFI  360
             +AR+G AP+F+ + +  GVP  A++ S + + +  L  S     +++ L+ +SG++  I
Sbjct  308  SLARDGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLASLNPAIVFNFLLAISGLSGLI  367

Query  361  VWAVIGICHIRFRRALVVQGEDPAKLPFKAWLYPWGTYFSVALNIFLVFFQGYTAFL---  417
            VW +I + H+RFR+A   QG    +LPFKA L P G    +A  I ++  Q   AFL   
Sbjct  368  VWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILIIQFLYAFLPVP  427

Query  418  ---NPFSADDFVINYILLPVFALFVLGYKFWHKTR  449
                 + A  F   Y+++ +F + ++G K   K  
Sbjct  428  GGPKNWGAGSFAAAYLIVLLFLIILIGVKLHVKNW  462


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 92.8 bits (231),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 91/411 (22%), Positives = 165/411 (40%), Gaps = 30/411 (7%)

Query  9    IIGPGLLVGSGNALSKGGPAGVLISFSLVGIIVFFVMQSLGEMATLIPVTGSFTEYAQRF  68
            +IG G+ V    A   GGPA ++  +    I    V     E+++ +P +G    Y +  
Sbjct  14   VIGSGIFVAPLVA--SGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGGIYVYLENA  71

Query  69   IDDSLAFGLGWAYWYLWVTVLA-NEYNAISLVIGYWTDAVPQWGW------ILIFWFLFL  121
                +AF  GW+ W+ +V  LA +   A S ++      +    W      I I     +
Sbjct  72   FGKFVAFLAGWSNWFAYVLGLASSASVAASYLLSALGPDLVPTTWLTYGIAIAILIIFAI  131

Query  122  GLSNLGVLAYGEMEFWLSLIKILALIAFFILAVCISTGGIGPQPIGFKYWHDPGPFADSI  181
             ++  GV    +++  L ++K+L  +   I+   + T   G   +    WH    F D  
Sbjct  132  -INIRGVRESAKIQNILGILKLLLPLILIIILGLV-TADGGGFNLLSGEWHT--FFPDGW  187

Query  182  NGVARTFVVAGTLYAGTEMVGITAGESANPRKAVPTAIRQVFWRILIFYIGTMFFIGILL  241
             GV   F+     + G E     + E    ++ VP AI      + + YI        ++
Sbjct  188  PGVFAGFLGVLWSFTGFESAANVSEE--VKKRNVPKAIFIGVIIVGVLYILVNIAFFGVV  245

Query  242  PYNDKRLLGSSSNAASSPLTIALTDAGILPAAHLINALIVISVISAGNGSLYVASRTLLF  301
            P ++  L       A+          G    A ++  L+ +S++ A N ++  ASR L  
Sbjct  246  PDDEIALSSGLGQVAALLFQAVGGKWG----AIIVVILLALSLLGAVNTAIVGASRLLYA  301

Query  302  MARNGKAP--RFIGRTNGAGVPWVALIFSNLFTCIVFLTQSSGAGKIYSALITLSGVATF  359
            +AR+G  P  RF  + N  G P  A+I + + + I+ L     +   Y+AL++LS     
Sbjct  302  LARDGVLPFSRFFAKVNKFGSPIRAIILTAILSLILLLL-FLLSPAAYNALLSLSAYGYL  360

Query  360  IVWAVIGICHIRFRRALVVQGEDPAKLPFKAWLYPWGTYFSVALNIFLVFF  410
            + + +  I  +  R+     G  P + P           F +  ++FL+  
Sbjct  361  LSYLLPIIGLLILRKKRPDLGRIPGRWPV--------AIFGILFSLFLIVA  403



Lambda      K        H        a         alpha
   0.327    0.143    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00029546

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                199     4e-62


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 199 bits (509),  Expect = 4e-62, Method: Composition-based stats.
 Identities = 103/232 (44%), Positives = 138/232 (59%), Gaps = 7/232 (3%)

Query  8    GIIGPGLLVGSGNALSKGGPAGVLISFSLVGIIVFFVMQSLGEMATLIPVTGSFTEYAQR  67
            G+IG GL VGSG+ L + GPAG L+ + + G+++F VM SLGE++T  PV+G F  YA R
Sbjct  9    GVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASR  68

Query  68   FIDDSLAFGLGWAYWYLWVTVLANEYNAISLVIGYW---TDAVPQWGWILIFWFLFLGLS  124
            F+  SL F  GW YW  W+TVLA E  A S++I +W    D    W W  +F  L   ++
Sbjct  69   FLGPSLGFATGWNYWLSWITVLALELTAASILIQFWELVPDIPYLWVWGAVFLVLLTIIN  128

Query  125  NLGVLAYGEMEFWLSLIKILALIAFFILAVCISTGGIGPQPIGFKYWHDPGPFADSING-  183
             +GV  YGE EFW +LIKI+A+I F I+ + + +GG       F+Y  D G   +   G 
Sbjct  129  LVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGF  188

Query  184  ---VARTFVVAGTLYAGTEMVGITAGESANPRKAVPTAIRQVFWRILIFYIG  232
                   FV+A   + G E+VGI AGE  NP K++P AI QV WRI IFYI 
Sbjct  189  GKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYIL  240



Lambda      K        H        a         alpha
   0.326    0.143    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00034474

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                199     8e-61


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 199 bits (507),  Expect = 8e-61, Method: Composition-based stats.
 Identities = 94/249 (38%), Positives = 142/249 (57%), Gaps = 7/249 (3%)

Query  30   ESANPRKAVPTAIRQVFWRILIFYIGTMFFIGILLPYNDKRLLGSSSNAASSPLTIALTD  89
            E  NP K++P AI QV WRI IFYI ++  IG+L+P+ND  LL + S +A+SP  I    
Sbjct  215  EVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPWNDPGLL-NDSASAASPFVIFFKF  273

Query  90   AGILPAAHLINALIVISVISAGNGSLYVASRTLLFMARNGKAPRFIGRTNGAGVPWVALI  149
             GI   A LINA+I+ + +SA N SLY  SR L  +AR+G AP+F+ + +  GVP  A++
Sbjct  274  LGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLARDGLAPKFLKKVDKRGVPLRAIL  333

Query  150  FSNLFTCIVFLTQSSGAGKIYSALITLSGVATFIVWAVIGICHIRFRRALVVQGEDPAKL  209
             S + + +  L  S     +++ L+ +SG++  IVW +I + H+RFR+A   QG    +L
Sbjct  334  VSMVISLLALLLASLNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDEL  393

Query  210  PFKAWLYPWGTYFSVALNIFLVFFQGYTAFL------NPFSADDFVINYILLPVFALFVL  263
            PFKA L P G    +A  I ++  Q   AFL        + A  F   Y+++ +F + ++
Sbjct  394  PFKAPLGPLGVILGLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILI  453

Query  264  GYKFWHKTR  272
            G K   K  
Sbjct  454  GVKLHVKNW  462



Lambda      K        H        a         alpha
   0.327    0.141    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00034473

Length=244
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                196     1e-60


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 196 bits (499),  Expect = 1e-60, Method: Composition-based stats.
 Identities = 100/232 (43%), Positives = 135/232 (58%), Gaps = 7/232 (3%)

Query  8    GIIGPGLLVGSGNALSKGGPAGVLISFSLVGIIVFFVMQSLGEMATLIPVTGSFTEYAQR  67
            G+IG GL VGSG+ L + GPAG L+ + + G+++F VM SLGE++T  PV+G F  YA R
Sbjct  9    GVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASR  68

Query  68   FIDDSLAFGLGWAYWYLWVTVSRNLYNAISLVIGYW---TDAVPQWGWILIFWFLFLGLS  124
            F+  SL F  GW YW  W+TV      A S++I +W    D    W W  +F  L   ++
Sbjct  69   FLGPSLGFATGWNYWLSWITVLALELTAASILIQFWELVPDIPYLWVWGAVFLVLLTIIN  128

Query  125  NLGVLAYGEMEFWLSLIKILALIAFFILAVCISTGGIGPQPIGFKYWHDPGPFADSING-  183
             +GV  YGE EFW +LIKI+A+I F I+ + + +GG       F+Y  D G   +   G 
Sbjct  129  LVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGF  188

Query  184  ---VARTFVVAGTLYAGTEMVGITAGESANPRKAVPTAIRQVFWRILIFYIG  232
                   FV+A   + G E+VGI AGE  NP K++P AI QV WRI IFYI 
Sbjct  189  GKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYIL  240



Lambda      K        H        a         alpha
   0.327    0.144    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00034472

Length=367
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                281     4e-92
CDD:404414 pfam13520, AA_permease_2, Amino acid permease              75.8    1e-15


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 281 bits (722),  Expect = 4e-92, Method: Composition-based stats.
 Identities = 149/355 (42%), Positives = 212/355 (60%), Gaps = 8/355 (2%)

Query  8    GIIGPGLLVGSGNALSKGGPAGVLISFSLVGIIVFFVMQSLGEMATLIPVTGSFTEYAQR  67
            G+IG GL VGSG+ L + GPAG L+ + + G+++F VM SLGE++T  PV+G F  YA R
Sbjct  9    GVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASR  68

Query  68   FIDDSLAFGLGWAYWYLWVTVLANEYNAISLVIGYW---TDAVPQWGWILIFWFLFLGLS  124
            F+  SL F  GW YW  W+TVLA E  A S++I +W    D    W W  +F  L   ++
Sbjct  69   FLGPSLGFATGWNYWLSWITVLALELTAASILIQFWELVPDIPYLWVWGAVFLVLLTIIN  128

Query  125  NLGVLAYGEMEFWLSLIKILALIAFFILAVCISTGGIGPQPIGFKYWHDPGPFADSING-  183
             +GV  YGE EFW +LIKI+A+I F I+ + + +GG       F+Y  D G   +   G 
Sbjct  129  LVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGF  188

Query  184  ---VARTFVVAGTLYAGTEMVGITAGESANPRKAVPTAIRQVFWRILIFYIGTMFFIGIL  240
                   FV+A   + G E+VGI AGE  NP K++P AI QV WRI IFYI ++  IG+L
Sbjct  189  GKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLL  248

Query  241  LPYNDKRLLGSSSNAASSPLTIALTDAGILPAAHLINALIVISVISAGNGSLYVASRTLL  300
            +P+ND  LL + S +A+SP  I     GI   A LINA+I+ + +SA N SLY  SR L 
Sbjct  249  VPWNDPGLL-NDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLY  307

Query  301  FMARNGKAPRFIGRTNGAGVPWVALIFSNLFTCIVFLTQSSGAGKIYSALITLSG  355
             +AR+G AP+F+ + +  GVP  A++ S + + +  L  S     +++ L+ +SG
Sbjct  308  SLARDGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLASLNPAIVFNFLLAISG  362


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 75.8 bits (187),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 78/346 (23%), Positives = 142/346 (41%), Gaps = 20/346 (6%)

Query  19   GNALSKGGPAGVLISFSLVGIIVFFVMQSLGEMATLIPVTGSFTEYAQRFIDDSLAFGLG  78
               ++ GGPA ++  +    I    V     E+++ +P +G    Y +      +AF  G
Sbjct  22   APLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGGIYVYLENAFGKFVAFLAG  81

Query  79   WAYWYLWVTVLA-NEYNAISLVIGYWTDAVPQWGW------ILIFWFLFLGLSNLGVLAY  131
            W+ W+ +V  LA +   A S ++      +    W      I I     + ++  GV   
Sbjct  82   WSNWFAYVLGLASSASVAASYLLSALGPDLVPTTWLTYGIAIAILIIFAI-INIRGVRES  140

Query  132  GEMEFWLSLIKILALIAFFILAVCISTGGIGPQPIGFKYWHDPGPFADSINGVARTFVVA  191
             +++  L ++K+L  +   I+   + T   G   +    WH    F D   GV   F+  
Sbjct  141  AKIQNILGILKLLLPLILIIILGLV-TADGGGFNLLSGEWHT--FFPDGWPGVFAGFLGV  197

Query  192  GTLYAGTEMVGITAGESANPRKAVPTAIRQVFWRILIFYIGTMFFIGILLPYNDKRLLGS  251
               + G E     + E    ++ VP AI      + + YI        ++P ++  L   
Sbjct  198  LWSFTGFESAANVSEE--VKKRNVPKAIFIGVIIVGVLYILVNIAFFGVVPDDEIALSSG  255

Query  252  SSNAASSPLTIALTDAGILPAAHLINALIVISVISAGNGSLYVASRTLLFMARNGKAP--  309
                A+          G    A ++  L+ +S++ A N ++  ASR L  +AR+G  P  
Sbjct  256  LGQVAALLFQAVGGKWG----AIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFS  311

Query  310  RFIGRTNGAGVPWVALIFSNLFTCIVFLTQSSGAGKIYSALITLSG  355
            RF  + N  G P  A+I + + + I+ L     +   Y+AL++LS 
Sbjct  312  RFFAKVNKFGSPIRAIILTAILSLILLLL-FLLSPAAYNALLSLSA  356



Lambda      K        H        a         alpha
   0.326    0.142    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00034475

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                173     2e-52


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 173 bits (441),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 92/214 (43%), Positives = 125/214 (58%), Gaps = 7/214 (3%)

Query  1    MATLIPVTGSFTEYAQRFIDDSLAFGLGWAYWYLWVTVLANEYNAISLVIGYW---TDAV  57
            ++T  PV+G F  YA RF+  SL F  GW YW  W+TVLA E  A S++I +W    D  
Sbjct  52   ISTNGPVSGGFYTYASRFLGPSLGFATGWNYWLSWITVLALELTAASILIQFWELVPDIP  111

Query  58   PQWGWILIFWFLFLGLSNLGVLAYGEMEFWLSLIKILALIAFFILAVCISTGGIGPQPIG  117
              W W  +F  L   ++ +GV  YGE EFW +LIKI+A+I F I+ + + +GG       
Sbjct  112  YLWVWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAI  171

Query  118  FKYWHDPGPFADSING----VARTFVVAGTLYAGTEMVGITAGESANPRKAVPTAIRQVF  173
            F+Y  D G   +   G        FV+A   + G E+VGI AGE  NP K++P AI QV 
Sbjct  172  FRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVI  231

Query  174  WRILIFYIGTMFFIGILLPYNDKRLLGSSSNAAS  207
            WRI IFYI ++  IG+L+P+ND  LL  S++AAS
Sbjct  232  WRITIFYILSLLAIGLLVPWNDPGLLNDSASAAS  265



Lambda      K        H        a         alpha
   0.327    0.143    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00034476

Length=134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                87.4    1e-21


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 87.4 bits (217),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 46/122 (38%), Positives = 73/122 (60%), Gaps = 1/122 (1%)

Query  1    MFFIGILLPYNDKRLLGSSSNAASSPLTIALTDAGILPAAHLINALIVISVISAGNGSLY  60
            +  IG+L+P+ND  LL + S +A+SP  I     GI   A LINA+I+ + +SA N SLY
Sbjct  242  LLAIGLLVPWNDPGLL-NDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLY  300

Query  61   VASRTLLFMARNGKAPRFIGRTNGAGVPWVALIFSNLFTCIVFLTQSSGAGKIYSALITL  120
              SR L  +AR+G AP+F+ + +  GVP  A++ S + + +  L  S     +++ L+ +
Sbjct  301  SGSRMLYSLARDGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLASLNPAIVFNFLLAI  360

Query  121  SG  122
            SG
Sbjct  361  SG  362



Lambda      K        H        a         alpha
   0.324    0.139    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00029548

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00029549

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00029550

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00029551

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00029552

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A...  86.2    1e-21


>CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A.  This 
protein is found in eukaryotes. Proteins in this family are 
typically between 171 to 275 amino acids in length. Although 
the HsbA amino acid sequence suggests that HsbA may be hydrophilic, 
HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) 
surfaces in the presence of NaCl or CaCl2. 
When HsbA was adsorbed on the hydrophobic PBSA surfaces, 
it promoted PBSA degradation via the CutL1 polyesterase. CutL1 
interacts directly with HsbA attached to the hydrophobic 
QCM electrode surface. These results suggest that when HsbA 
is adsorbed onto the PBSA surface, it recruits CutL1, and that 
when CutL1 is accumulated on the PBSA surface, it stimulates 
PBSA degradation.
Length=123

 Score = 86.2 bits (214),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 67/122 (55%), Gaps = 4/122 (3%)

Query  26   APAVGVISDISAQTSALASAVSSYNGGD----PSAVKSASEKLVSTINSGVDTVKSGPAL  81
            A  +  ++ IS   +AL +AV++YNGG        + SAS  L+S I       ++ P L
Sbjct  2    ATVISDLTTISTAVTALDTAVNAYNGGLGLLSALPILSASNALLSAIKKATTDAQASPPL  61

Query  82   STADALALTSPVQDLTKQVEGVIDDLISKKDKFVAANAGGTVYEDLKAQYTAADSLAKAI  141
            + A+ALAL   VQ LT  ++  +D LI+KK  F AA  G  V   L+   TA+D+L+ A+
Sbjct  62   TLAEALALAQAVQTLTPDIKAALDALIAKKPAFDAAGLGSVVLSSLQLLKTASDALSDAL  121

Query  142  SA  143
             +
Sbjct  122  VS  123



Lambda      K        H        a         alpha
   0.302    0.115    0.292    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00034477

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00034478

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00029553

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00029554

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0667    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00034479

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A...  86.2    1e-21


>CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A.  This 
protein is found in eukaryotes. Proteins in this family are 
typically between 171 to 275 amino acids in length. Although 
the HsbA amino acid sequence suggests that HsbA may be hydrophilic, 
HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) 
surfaces in the presence of NaCl or CaCl2. 
When HsbA was adsorbed on the hydrophobic PBSA surfaces, 
it promoted PBSA degradation via the CutL1 polyesterase. CutL1 
interacts directly with HsbA attached to the hydrophobic 
QCM electrode surface. These results suggest that when HsbA 
is adsorbed onto the PBSA surface, it recruits CutL1, and that 
when CutL1 is accumulated on the PBSA surface, it stimulates 
PBSA degradation.
Length=123

 Score = 86.2 bits (214),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 67/122 (55%), Gaps = 4/122 (3%)

Query  26   APAVGVISDISAQTSALASAVSSYNGGD----PSAVKSASEKLVSTINSGVDTVKSGPAL  81
            A  +  ++ IS   +AL +AV++YNGG        + SAS  L+S I       ++ P L
Sbjct  2    ATVISDLTTISTAVTALDTAVNAYNGGLGLLSALPILSASNALLSAIKKATTDAQASPPL  61

Query  82   STADALALTSPVQDLTKQVEGVIDDLISKKDKFVAANAGGTVYEDLKAQYTAADSLAKAI  141
            + A+ALAL   VQ LT  ++  +D LI+KK  F AA  G  V   L+   TA+D+L+ A+
Sbjct  62   TLAEALALAQAVQTLTPDIKAALDALIAKKPAFDAAGLGSVVLSSLQLLKTASDALSDAL  121

Query  142  SA  143
             +
Sbjct  122  VS  123



Lambda      K        H        a         alpha
   0.302    0.115    0.292    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00034480

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00029556

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A...  86.2    1e-21


>CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A.  This 
protein is found in eukaryotes. Proteins in this family are 
typically between 171 to 275 amino acids in length. Although 
the HsbA amino acid sequence suggests that HsbA may be hydrophilic, 
HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) 
surfaces in the presence of NaCl or CaCl2. 
When HsbA was adsorbed on the hydrophobic PBSA surfaces, 
it promoted PBSA degradation via the CutL1 polyesterase. CutL1 
interacts directly with HsbA attached to the hydrophobic 
QCM electrode surface. These results suggest that when HsbA 
is adsorbed onto the PBSA surface, it recruits CutL1, and that 
when CutL1 is accumulated on the PBSA surface, it stimulates 
PBSA degradation.
Length=123

 Score = 86.2 bits (214),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 67/122 (55%), Gaps = 4/122 (3%)

Query  26   APAVGVISDISAQTSALASAVSSYNGGD----PSAVKSASEKLVSTINSGVDTVKSGPAL  81
            A  +  ++ IS   +AL +AV++YNGG        + SAS  L+S I       ++ P L
Sbjct  2    ATVISDLTTISTAVTALDTAVNAYNGGLGLLSALPILSASNALLSAIKKATTDAQASPPL  61

Query  82   STADALALTSPVQDLTKQVEGVIDDLISKKDKFVAANAGGTVYEDLKAQYTAADSLAKAI  141
            + A+ALAL   VQ LT  ++  +D LI+KK  F AA  G  V   L+   TA+D+L+ A+
Sbjct  62   TLAEALALAQAVQTLTPDIKAALDALIAKKPAFDAAGLGSVVLSSLQLLKTASDALSDAL  121

Query  142  SA  143
             +
Sbjct  122  VS  123



Lambda      K        H        a         alpha
   0.302    0.115    0.292    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00029555

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A...  86.2    1e-21


>CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A.  This 
protein is found in eukaryotes. Proteins in this family are 
typically between 171 to 275 amino acids in length. Although 
the HsbA amino acid sequence suggests that HsbA may be hydrophilic, 
HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) 
surfaces in the presence of NaCl or CaCl2. 
When HsbA was adsorbed on the hydrophobic PBSA surfaces, 
it promoted PBSA degradation via the CutL1 polyesterase. CutL1 
interacts directly with HsbA attached to the hydrophobic 
QCM electrode surface. These results suggest that when HsbA 
is adsorbed onto the PBSA surface, it recruits CutL1, and that 
when CutL1 is accumulated on the PBSA surface, it stimulates 
PBSA degradation.
Length=123

 Score = 86.2 bits (214),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 67/122 (55%), Gaps = 4/122 (3%)

Query  26   APAVGVISDISAQTSALASAVSSYNGGD----PSAVKSASEKLVSTINSGVDTVKSGPAL  81
            A  +  ++ IS   +AL +AV++YNGG        + SAS  L+S I       ++ P L
Sbjct  2    ATVISDLTTISTAVTALDTAVNAYNGGLGLLSALPILSASNALLSAIKKATTDAQASPPL  61

Query  82   STADALALTSPVQDLTKQVEGVIDDLISKKDKFVAANAGGTVYEDLKAQYTAADSLAKAI  141
            + A+ALAL   VQ LT  ++  +D LI+KK  F AA  G  V   L+   TA+D+L+ A+
Sbjct  62   TLAEALALAQAVQTLTPDIKAALDALIAKKPAFDAAGLGSVVLSSLQLLKTASDALSDAL  121

Query  142  SA  143
             +
Sbjct  122  VS  123



Lambda      K        H        a         alpha
   0.302    0.115    0.292    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00029558

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A...  86.2    1e-21


>CDD:463524 pfam12296, HsbA, Hydrophobic surface binding protein A.  This 
protein is found in eukaryotes. Proteins in this family are 
typically between 171 to 275 amino acids in length. Although 
the HsbA amino acid sequence suggests that HsbA may be hydrophilic, 
HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) 
surfaces in the presence of NaCl or CaCl2. 
When HsbA was adsorbed on the hydrophobic PBSA surfaces, 
it promoted PBSA degradation via the CutL1 polyesterase. CutL1 
interacts directly with HsbA attached to the hydrophobic 
QCM electrode surface. These results suggest that when HsbA 
is adsorbed onto the PBSA surface, it recruits CutL1, and that 
when CutL1 is accumulated on the PBSA surface, it stimulates 
PBSA degradation.
Length=123

 Score = 86.2 bits (214),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 67/122 (55%), Gaps = 4/122 (3%)

Query  26   APAVGVISDISAQTSALASAVSSYNGGD----PSAVKSASEKLVSTINSGVDTVKSGPAL  81
            A  +  ++ IS   +AL +AV++YNGG        + SAS  L+S I       ++ P L
Sbjct  2    ATVISDLTTISTAVTALDTAVNAYNGGLGLLSALPILSASNALLSAIKKATTDAQASPPL  61

Query  82   STADALALTSPVQDLTKQVEGVIDDLISKKDKFVAANAGGTVYEDLKAQYTAADSLAKAI  141
            + A+ALAL   VQ LT  ++  +D LI+KK  F AA  G  V   L+   TA+D+L+ A+
Sbjct  62   TLAEALALAQAVQTLTPDIKAALDALIAKKPAFDAAGLGSVVLSSLQLLKTASDALSDAL  121

Query  142  SA  143
             +
Sbjct  122  VS  123



Lambda      K        H        a         alpha
   0.302    0.115    0.292    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00029559

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00029560

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00029561

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus. This fam...  138     8e-42


>CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus.  This family represents 
the N-terminal region of the eukaryotic epoxide hydrolase 
protein. Epoxide hydrolases (EC:3.3.2.3) comprise a group 
of functionally related enzymes that catalyze the addition 
of water to oxirane compounds (epoxides), thereby usually 
generating vicinal trans-diols. EHs have been found in all 
types of living organisms, including mammals, invertebrates, 
plants, fungi and bacteria. In animals, the major interest 
in EH is directed towards their detoxification capacity for 
epoxides since they are important safeguards against the cytotoxic 
and genotoxic potential of oxirane derivatives that 
are often reactive electrophiles because of the high tension 
of the three-membered ring system and the strong polarization 
of the C--O bonds. This is of significant relevance because 
epoxides are frequent intermediary metabolites which arise 
during the biotransformation of foreign compounds. This family 
is often found in conjunction with pfam00561.
Length=106

 Score = 138 bits (350),  Expect = 8e-42, Method: Composition-based stats.
 Identities = 44/108 (41%), Positives = 66/108 (61%), Gaps = 3/108 (3%)

Query  16   KPFRVSIPEEELDEFQALLKLSKIAPPTFENSRPSGQYGITSDWLTTLRKQWQKDFDWRA  75
            +PF + +P+EELD+ +  L L++              YG+  D+L  L   W+  +DWRA
Sbjct  2    RPFTIHVPDEELDDLRQRLALTRWPDE---LEGDDWWYGVPLDYLRELVDYWRDGYDWRA  58

Query  76   CEAKANLFPQFTVDIEDIKLKFAALYSKKPDAVPITLIHGWPGSYTEF  123
             EA+ N FPQFT +I+ + + F  + S KPDA+P+ L+HGWPGS+ EF
Sbjct  59   QEARLNSFPQFTTEIDGLDIHFVHVRSNKPDAIPLLLLHGWPGSFLEF  106



Lambda      K        H        a         alpha
   0.321    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00029562

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus. This fam...  138     8e-42


>CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus.  This family represents 
the N-terminal region of the eukaryotic epoxide hydrolase 
protein. Epoxide hydrolases (EC:3.3.2.3) comprise a group 
of functionally related enzymes that catalyze the addition 
of water to oxirane compounds (epoxides), thereby usually 
generating vicinal trans-diols. EHs have been found in all 
types of living organisms, including mammals, invertebrates, 
plants, fungi and bacteria. In animals, the major interest 
in EH is directed towards their detoxification capacity for 
epoxides since they are important safeguards against the cytotoxic 
and genotoxic potential of oxirane derivatives that 
are often reactive electrophiles because of the high tension 
of the three-membered ring system and the strong polarization 
of the C--O bonds. This is of significant relevance because 
epoxides are frequent intermediary metabolites which arise 
during the biotransformation of foreign compounds. This family 
is often found in conjunction with pfam00561.
Length=106

 Score = 138 bits (350),  Expect = 8e-42, Method: Composition-based stats.
 Identities = 44/108 (41%), Positives = 66/108 (61%), Gaps = 3/108 (3%)

Query  16   KPFRVSIPEEELDEFQALLKLSKIAPPTFENSRPSGQYGITSDWLTTLRKQWQKDFDWRA  75
            +PF + +P+EELD+ +  L L++              YG+  D+L  L   W+  +DWRA
Sbjct  2    RPFTIHVPDEELDDLRQRLALTRWPDE---LEGDDWWYGVPLDYLRELVDYWRDGYDWRA  58

Query  76   CEAKANLFPQFTVDIEDIKLKFAALYSKKPDAVPITLIHGWPGSYTEF  123
             EA+ N FPQFT +I+ + + F  + S KPDA+P+ L+HGWPGS+ EF
Sbjct  59   QEARLNSFPQFTTEIDGLDIHFVHVRSNKPDAIPLLLLHGWPGSFLEF  106



Lambda      K        H        a         alpha
   0.321    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00029563

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus. This fam...  137     1e-42


>CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus.  This family represents 
the N-terminal region of the eukaryotic epoxide hydrolase 
protein. Epoxide hydrolases (EC:3.3.2.3) comprise a group 
of functionally related enzymes that catalyze the addition 
of water to oxirane compounds (epoxides), thereby usually 
generating vicinal trans-diols. EHs have been found in all 
types of living organisms, including mammals, invertebrates, 
plants, fungi and bacteria. In animals, the major interest 
in EH is directed towards their detoxification capacity for 
epoxides since they are important safeguards against the cytotoxic 
and genotoxic potential of oxirane derivatives that 
are often reactive electrophiles because of the high tension 
of the three-membered ring system and the strong polarization 
of the C--O bonds. This is of significant relevance because 
epoxides are frequent intermediary metabolites which arise 
during the biotransformation of foreign compounds. This family 
is often found in conjunction with pfam00561.
Length=106

 Score = 137 bits (349),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 44/108 (41%), Positives = 66/108 (61%), Gaps = 3/108 (3%)

Query  16   KPFRVSIPEEELDEFQALLKLSKIAPPTFENSRPSGQYGITSDWLTTLRKQWQKDFDWRA  75
            +PF + +P+EELD+ +  L L++              YG+  D+L  L   W+  +DWRA
Sbjct  2    RPFTIHVPDEELDDLRQRLALTRWPDE---LEGDDWWYGVPLDYLRELVDYWRDGYDWRA  58

Query  76   CEAKANLFPQFTVDIEDIKLKFAALYSKKPDAVPITLIHGWPGSYTEF  123
             EA+ N FPQFT +I+ + + F  + S KPDA+P+ L+HGWPGS+ EF
Sbjct  59   QEARLNSFPQFTTEIDGLDIHFVHVRSNKPDAIPLLLLHGWPGSFLEF  106



Lambda      K        H        a         alpha
   0.322    0.138    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00034481

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus. This fam...  136     1e-39


>CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus.  This family represents 
the N-terminal region of the eukaryotic epoxide hydrolase 
protein. Epoxide hydrolases (EC:3.3.2.3) comprise a group 
of functionally related enzymes that catalyze the addition 
of water to oxirane compounds (epoxides), thereby usually 
generating vicinal trans-diols. EHs have been found in all 
types of living organisms, including mammals, invertebrates, 
plants, fungi and bacteria. In animals, the major interest 
in EH is directed towards their detoxification capacity for 
epoxides since they are important safeguards against the cytotoxic 
and genotoxic potential of oxirane derivatives that 
are often reactive electrophiles because of the high tension 
of the three-membered ring system and the strong polarization 
of the C--O bonds. This is of significant relevance because 
epoxides are frequent intermediary metabolites which arise 
during the biotransformation of foreign compounds. This family 
is often found in conjunction with pfam00561.
Length=106

 Score = 136 bits (344),  Expect = 1e-39, Method: Composition-based stats.
 Identities = 44/108 (41%), Positives = 66/108 (61%), Gaps = 3/108 (3%)

Query  16   KPFRVSIPEEELDEFQALLKLSKIAPPTFENSRPSGQYGITSDWLTTLRKQWQKDFDWRA  75
            +PF + +P+EELD+ +  L L++              YG+  D+L  L   W+  +DWRA
Sbjct  2    RPFTIHVPDEELDDLRQRLALTRWPDE---LEGDDWWYGVPLDYLRELVDYWRDGYDWRA  58

Query  76   CEAKANLFPQFTVDIEDIKLKFAALYSKKPDAVPITLIHGWPGSYTEF  123
             EA+ N FPQFT +I+ + + F  + S KPDA+P+ L+HGWPGS+ EF
Sbjct  59   QEARLNSFPQFTTEIDGLDIHFVHVRSNKPDAIPLLLLHGWPGSFLEF  106



Lambda      K        H        a         alpha
   0.321    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 519925656


Query= TCONS_00029565

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00034482

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  55.0    8e-11


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 55.0 bits (133),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 19/34 (56%), Gaps = 0/34 (0%)

Query  25  KACQNCTKSKVRCGLEKPICSRCRSKGHSCQYPP  58
            AC NC K KV+C  +KP CSRC   G  C Y  
Sbjct  1   TACDNCRKRKVKCDGKKPACSRCIKNGLECTYSR  34



Lambda      K        H        a         alpha
   0.320    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00029566

Length=401


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00029567

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain. ...  114     3e-32
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  108     1e-30
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  101     7e-28
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  78.9    2e-19
CDD:395966 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferas...  72.5    1e-15
CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain. ...  65.9    7e-14


>CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain.  This family 
appears to have methyltransferase activity.
Length=150

 Score = 114 bits (286),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 47/157 (30%), Positives = 72/157 (46%), Gaps = 10/157 (6%)

Query  35   IKPSMKILDIGCGPGSISIDFARLV-PQGHVTAIEYVADPLDAARSLASAHGLTNIDFRV  93
            I   M++LD+GCG G +S + A  + P   V  I+   + ++ AR  A   G  N++F  
Sbjct  1    IDKGMRVLDLGCGTGHLSFELAEELGPNAEVVGIDISEEAIEKARENAQKLGFDNVEFEQ  60

Query  94   GDIHSLD--FPDDTFDIVHVHQVLQHIADPVRALREMRRVAKSDGGIVAARESASMTWYP  151
            GDI  L     DD FD+V  + VL HI DP + L+E+ RV K  GG +   +  S+   P
Sbjct  61   GDIEELPELLEDDKFDVVISNCVLNHIPDPDKVLQEILRVLKP-GGRLIISDPDSLAELP  119

Query  152  DNAGIAGWKEVTDRMCKAKGSNPHPGRYIHVWAEEAG  188
             +       +                + ++   EEAG
Sbjct  120  AHV------KEDSTYYAGCVGGAILKKKLYELLEEAG  150


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 108 bits (271),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 40/98 (41%), Positives = 56/98 (57%), Gaps = 4/98 (4%)

Query  41   ILDIGCGPGSISIDFARLVPQGHVTAIEYVADPLDAARSLASAHGLTNIDFRVGDIHSLD  100
            +LD+GCG G +++  AR      VT ++   + L+ AR  A+  GL N++F  GD   L 
Sbjct  1    VLDLGCGTGRLTLALARRG-GARVTGVDLSPEMLERARERAAEAGL-NVEFVQGDAEDLP  58

Query  101  FPDDTFDIVHVHQVLQHIADP--VRALREMRRVAKSDG  136
            FPD +FD+V    VL H+ DP    ALRE+ RV K  G
Sbjct  59   FPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 101 bits (253),  Expect = 7e-28, Method: Composition-based stats.
 Identities = 43/95 (45%), Positives = 57/95 (60%), Gaps = 5/95 (5%)

Query  42   LDIGCGPGSISIDFARLVPQGHVTAIEYVADPLDAARSLASAHGLTNIDFRVGDIHSLDF  101
            LD+GCG G ++   ARL  +  VT ++   + L+ AR  A   GLT   F VGD   L F
Sbjct  1    LDVGCGTGLLTELLARLGAR--VTGVDISPEMLELAREKAPREGLT---FVVGDAEDLPF  55

Query  102  PDDTFDIVHVHQVLQHIADPVRALREMRRVAKSDG  136
            PD++FD+V   +VL H+ DP RALRE+ RV K  G
Sbjct  56   PDNSFDLVLSSEVLHHVEDPERALREIARVLKPGG  90


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 78.9 bits (195),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 34/101 (34%), Positives = 52/101 (51%), Gaps = 6/101 (6%)

Query  42   LDIGCGPGSISIDFARLVPQGHVTAIEYVADPLDAARSLASAHGL---TNIDFRVGDIHS  98
            L+IGCG G++       +P    T ++     L+AAR   +A GL     ++    D+  
Sbjct  1    LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAALGLLNAVRVELFQLDLGE  60

Query  99   LDFPDDTFDIVHVHQVLQHIADPVRALREMRRVAKSDGGIV  139
            LD    +FD+V    VL H+ADP   LR +RR+ K  GG++
Sbjct  61   LDPG--SFDVVVASNVLHHLADPRAVLRNIRRLLK-PGGVL  98


>CDD:395966 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family. 
 
Length=228

 Score = 72.5 bits (178),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 34/114 (30%), Positives = 50/114 (44%), Gaps = 2/114 (2%)

Query  36   KPSMKILDIGCGPGSISIDFARLV-PQGHVTAIEYVADPLDAARSLASAHGLTNIDFRVG  94
            K   K LD+  G G  +   +      G V  ++   + L      A   G  NI+F  G
Sbjct  41   KRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQG  100

Query  95   DIHSLDFPDDTFDIVHVHQVLQHIADPVRALREMRRVAKSDGGIVAARESASMT  148
            +   L F DD+FDIV +   L++  D ++ L+E  RV K  GG V   E +   
Sbjct  101  NAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKP-GGRVVCLEFSKPE  153


>CDD:404385 pfam13489, Methyltransf_23, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=162

 Score = 65.9 bits (161),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 34/165 (21%), Positives = 55/165 (33%), Gaps = 22/165 (13%)

Query  29   AYLVPYIKPSMKILDIGCGPGSISIDFARLVPQGHVTAIEYVADPLDAARSLASAHGLTN  88
              L+P +    ++LD GCG G                      DP   A   A    L N
Sbjct  14   LRLLPKLPSPGRVLDFGCGTGIFLRLLRAQGFSV------TGVDPSPIAIERA----LLN  63

Query  89   IDFRVGDIHSLDFPDDTFDIVHVHQVLQHIADPVRALREMRRVAKSDGGIV---AARESA  145
            + F   D      P   FD++   +VL+H+ DP   LR++  + K  G ++         
Sbjct  64   VRFDQFDEQEAAVPAGKFDVIVAREVLEHVPDPPALLRQIAALLKPGGLLLLSTPLASDE  123

Query  146  SMTWYPDNAGIAGWKEVTDRMCKAKGSNPHPGRYIHVWAEEAGFQ  190
            +     +       +     +           R +    EEAGF+
Sbjct  124  ADRLLLEW---PYLRPRNGHIS------LFSARSLKRLLEEAGFE  159



Lambda      K        H        a         alpha
   0.319    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00029568

Length=864
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter. T...  258     8e-81


>CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter.  ThrE is 
a family of bacterial and Archaeal proteins that catalyze the 
export of L-threonine from the cell. UniProtKB:Q79VD1 has 
been characterized as being necessary for this export. The 
domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent 
efflux of threonine and serine.
Length=241

 Score = 258 bits (662),  Expect = 8e-81, Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 133/253 (53%), Gaps = 13/253 (5%)

Query  421  RYIMQLCKALMTFGAPTHRLEEYMQMTAKVLEV-DSQYLYFPGCMIMSFDDPSTRTTEVK  479
             + ++  + L+  GA T+R+E+ M   A+ L + + +    P  +I+SFDD     T V+
Sbjct  1    DFALRAGRILLESGAETYRVEDTMNRIARALGIDECEVFVTPTGIIISFDDDDESITTVR  60

Query  480  LVRVAQGINLQKLANTHRIYKNVVHDVIGVEEAIQELEDIQKKPPRFNKWIVVLVYGLAS  539
             VR  +GINL+KL+  + + + +VH  I +EEA + L++I++ PPR+ +W+VVL  GLAS
Sbjct  61   RVRS-RGINLEKLSEVNELSRRIVHGEISLEEAEKRLDEIERSPPRYPRWLVVLAAGLAS  119

Query  540  ATVGPFAFNARPIDMPIIFFNGCLLGLMQQVFAPRSALYSNVFEVTAAVLTSFLARAFGS  599
            A      F    ID  + F  G L GL++ V   R  L S  FE  AA + S LA    S
Sbjct  120  AAFALL-FGGDWIDFLVAFLAGGLGGLLRLVL-NRRGLNSFFFEAVAAFVASLLALLAVS  177

Query  600  IPKAVIDGKRQFLFCFSAIAQSSIALILPGFLVLCSSLELQSHQIIAGSIRMVYAIIYSL  659
            +                AI   SI L++PG  +  +  +L +  +++G  R+V AI+ +L
Sbjct  178  LG---------LGINPDAIIIGSIMLLVPGLPLTNAVRDLIAGDLVSGLARLVEAILIAL  228

Query  660  FLGYGITVGTTIY  672
             + +GI +   + 
Sbjct  229  AIAFGIALALALL  241



Lambda      K        H        a         alpha
   0.315    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1103910266


Query= TCONS_00029569

Length=864
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter. T...  258     8e-81


>CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter.  ThrE is 
a family of bacterial and Archaeal proteins that catalyze the 
export of L-threonine from the cell. UniProtKB:Q79VD1 has 
been characterized as being necessary for this export. The 
domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent 
efflux of threonine and serine.
Length=241

 Score = 258 bits (662),  Expect = 8e-81, Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 133/253 (53%), Gaps = 13/253 (5%)

Query  421  RYIMQLCKALMTFGAPTHRLEEYMQMTAKVLEV-DSQYLYFPGCMIMSFDDPSTRTTEVK  479
             + ++  + L+  GA T+R+E+ M   A+ L + + +    P  +I+SFDD     T V+
Sbjct  1    DFALRAGRILLESGAETYRVEDTMNRIARALGIDECEVFVTPTGIIISFDDDDESITTVR  60

Query  480  LVRVAQGINLQKLANTHRIYKNVVHDVIGVEEAIQELEDIQKKPPRFNKWIVVLVYGLAS  539
             VR  +GINL+KL+  + + + +VH  I +EEA + L++I++ PPR+ +W+VVL  GLAS
Sbjct  61   RVRS-RGINLEKLSEVNELSRRIVHGEISLEEAEKRLDEIERSPPRYPRWLVVLAAGLAS  119

Query  540  ATVGPFAFNARPIDMPIIFFNGCLLGLMQQVFAPRSALYSNVFEVTAAVLTSFLARAFGS  599
            A      F    ID  + F  G L GL++ V   R  L S  FE  AA + S LA    S
Sbjct  120  AAFALL-FGGDWIDFLVAFLAGGLGGLLRLVL-NRRGLNSFFFEAVAAFVASLLALLAVS  177

Query  600  IPKAVIDGKRQFLFCFSAIAQSSIALILPGFLVLCSSLELQSHQIIAGSIRMVYAIIYSL  659
            +                AI   SI L++PG  +  +  +L +  +++G  R+V AI+ +L
Sbjct  178  LG---------LGINPDAIIIGSIMLLVPGLPLTNAVRDLIAGDLVSGLARLVEAILIAL  228

Query  660  FLGYGITVGTTIY  672
             + +GI +   + 
Sbjct  229  AIAFGIALALALL  241



Lambda      K        H        a         alpha
   0.315    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1103910266


Query= TCONS_00034483

Length=864
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter. T...  258     8e-81


>CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter.  ThrE is 
a family of bacterial and Archaeal proteins that catalyze the 
export of L-threonine from the cell. UniProtKB:Q79VD1 has 
been characterized as being necessary for this export. The 
domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent 
efflux of threonine and serine.
Length=241

 Score = 258 bits (662),  Expect = 8e-81, Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 133/253 (53%), Gaps = 13/253 (5%)

Query  421  RYIMQLCKALMTFGAPTHRLEEYMQMTAKVLEV-DSQYLYFPGCMIMSFDDPSTRTTEVK  479
             + ++  + L+  GA T+R+E+ M   A+ L + + +    P  +I+SFDD     T V+
Sbjct  1    DFALRAGRILLESGAETYRVEDTMNRIARALGIDECEVFVTPTGIIISFDDDDESITTVR  60

Query  480  LVRVAQGINLQKLANTHRIYKNVVHDVIGVEEAIQELEDIQKKPPRFNKWIVVLVYGLAS  539
             VR  +GINL+KL+  + + + +VH  I +EEA + L++I++ PPR+ +W+VVL  GLAS
Sbjct  61   RVRS-RGINLEKLSEVNELSRRIVHGEISLEEAEKRLDEIERSPPRYPRWLVVLAAGLAS  119

Query  540  ATVGPFAFNARPIDMPIIFFNGCLLGLMQQVFAPRSALYSNVFEVTAAVLTSFLARAFGS  599
            A      F    ID  + F  G L GL++ V   R  L S  FE  AA + S LA    S
Sbjct  120  AAFALL-FGGDWIDFLVAFLAGGLGGLLRLVL-NRRGLNSFFFEAVAAFVASLLALLAVS  177

Query  600  IPKAVIDGKRQFLFCFSAIAQSSIALILPGFLVLCSSLELQSHQIIAGSIRMVYAIIYSL  659
            +                AI   SI L++PG  +  +  +L +  +++G  R+V AI+ +L
Sbjct  178  LG---------LGINPDAIIIGSIMLLVPGLPLTNAVRDLIAGDLVSGLARLVEAILIAL  228

Query  660  FLGYGITVGTTIY  672
             + +GI +   + 
Sbjct  229  AIAFGIALALALL  241



Lambda      K        H        a         alpha
   0.315    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1103910266


Query= TCONS_00034484

Length=813
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403800 pfam12708, Pectate_lyase_3, Pectate lyase superfamily ...  184     3e-54


>CDD:403800 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein. 
 This family of proteins possesses a beta helical structure 
like Pectate lyase. This family is most closely related to 
glycosyl hydrolase family 28.
Length=213

 Score = 184 bits (470),  Expect = 3e-54, Method: Composition-based stats.
 Identities = 90/224 (40%), Positives = 116/224 (52%), Gaps = 16/224 (7%)

Query  105  WRNVLDYGAKNDGSGDQTASLQKAINDNGSGGSRESSGVTRYPAQVYLPSGTYQLGSTLN  164
            +RNV DYGAK DG  D TA++QKAI+D G+         T  PA VY P GTY + S + 
Sbjct  1    FRNVKDYGAKGDGVTDDTAAIQKAIDDGGA---------TTTPAVVYFPPGTYLVSSPII  51

Query  165  LRVGTLIVGDPINPPVIKAVAGFNGNTLVNGYDSKNGPPE----TSFMTLMKNVVLDTTA  220
            L  GT++VGD  NPPV+KA   F G  L++G     G P      +F   ++N+V+D T 
Sbjct  52   LYSGTVLVGDGNNPPVLKAAPNFVGAGLIDGDPYTGGGPGIINTNNFYRQIRNLVIDITG  111

Query  221  LRPDTRITALQWGVAQGAGLTNVQINMPNYS-TGHTGIHVQAGSTIAITDVQINGGVVGI  279
            + P    T + W VAQ   L NV   M   S   H GI ++ GS   + D+  NGG +GI
Sbjct  112  VAPGA--TGIHWQVAQATSLQNVVFEMSFGSGNKHQGIFMENGSGGFLNDLVFNGGDIGI  169

Query  280  DNSNQQVNFKNIHFNGCTTAFRASGGHTALLQGATFENCGVGID  323
               NQQ   +NI F+ C T      G           NCGVGID
Sbjct  170  AVGNQQFTTRNITFHNCGTGIDVLWGWGWTYSNNNINNCGVGID  213



Lambda      K        H        a         alpha
   0.314    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1046254288


Query= TCONS_00029570

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.122    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00029571

Length=864
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter. T...  258     8e-81


>CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter.  ThrE is 
a family of bacterial and Archaeal proteins that catalyze the 
export of L-threonine from the cell. UniProtKB:Q79VD1 has 
been characterized as being necessary for this export. The 
domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent 
efflux of threonine and serine.
Length=241

 Score = 258 bits (662),  Expect = 8e-81, Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 133/253 (53%), Gaps = 13/253 (5%)

Query  421  RYIMQLCKALMTFGAPTHRLEEYMQMTAKVLEV-DSQYLYFPGCMIMSFDDPSTRTTEVK  479
             + ++  + L+  GA T+R+E+ M   A+ L + + +    P  +I+SFDD     T V+
Sbjct  1    DFALRAGRILLESGAETYRVEDTMNRIARALGIDECEVFVTPTGIIISFDDDDESITTVR  60

Query  480  LVRVAQGINLQKLANTHRIYKNVVHDVIGVEEAIQELEDIQKKPPRFNKWIVVLVYGLAS  539
             VR  +GINL+KL+  + + + +VH  I +EEA + L++I++ PPR+ +W+VVL  GLAS
Sbjct  61   RVRS-RGINLEKLSEVNELSRRIVHGEISLEEAEKRLDEIERSPPRYPRWLVVLAAGLAS  119

Query  540  ATVGPFAFNARPIDMPIIFFNGCLLGLMQQVFAPRSALYSNVFEVTAAVLTSFLARAFGS  599
            A      F    ID  + F  G L GL++ V   R  L S  FE  AA + S LA    S
Sbjct  120  AAFALL-FGGDWIDFLVAFLAGGLGGLLRLVL-NRRGLNSFFFEAVAAFVASLLALLAVS  177

Query  600  IPKAVIDGKRQFLFCFSAIAQSSIALILPGFLVLCSSLELQSHQIIAGSIRMVYAIIYSL  659
            +                AI   SI L++PG  +  +  +L +  +++G  R+V AI+ +L
Sbjct  178  LG---------LGINPDAIIIGSIMLLVPGLPLTNAVRDLIAGDLVSGLARLVEAILIAL  228

Query  660  FLGYGITVGTTIY  672
             + +GI +   + 
Sbjct  229  AIAFGIALALALL  241



Lambda      K        H        a         alpha
   0.315    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1103910266


Query= TCONS_00029572

Length=571
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461349 pfam04547, Anoctamin, Calcium-activated chloride chann...  338     3e-112


>CDD:461349 pfam04547, Anoctamin, Calcium-activated chloride channel.  The 
family carries eight putative transmembrane domains, and, 
although it has no similarity to other known channel proteins, 
it is clearly a calcium-activated ionic channel. It is expressed 
in various secretory epithelia, the retina and sensory 
neurons, and mediates receptor-activated chloride currents 
in diverse physiological processes.
Length=377

 Score = 338 bits (868),  Expect = 3e-112, Method: Composition-based stats.
 Identities = 132/469 (28%), Positives = 225/469 (48%), Gaps = 97/469 (21%)

Query  15   IRALFGEKTAFYFAFIHSYSSFLVVPAVWGIICWSY-----FGPYSVNCAVVNCLWCIVF  69
            IR  FGEK AFYFAF+  Y+ +L+ PA+ G++ + Y     F PY+V  A+   LW  +F
Sbjct  1    IRDYFGEKIAFYFAFLGFYTKWLLPPAIVGLLVFLYGLATLFDPYTVFFAIFMSLWATLF  60

Query  70   VEYWKIRETDLSLQWNVKGVGALKVNRPQYVWDKEIQDPITGETVRVFSMRKQLLRQLLL  129
            +E+WK RE +L+ +W   G    +  RP++  +KE  +P+TGE    +   K+ LR+   
Sbjct  61   LEFWKRREAELAYRWGTTGFEEEEEPRPEFKGEKERINPVTGEKEPYYPPWKRRLRRY--  118

Query  130  IPFATVAAVALGSLIVVTFALEVFISEVYVGPLKGYLEFLPTVLFSLSLPTITSKLTDIA  189
                ++  V L   ++V   + ++++ VY                           T +A
Sbjct  119  --LLSIPLVLLLIALLVLGVI-IYLNFVY---------------------------TKLA  148

Query  190  TQLTEYENYRTQDQYDLAQTAKTFVMNFITAFLPTLLTAFVYVPFGAKIIPYLDVFHVRG  249
             +LT++EN+RTQ +Y+ +   K F+                                   
Sbjct  149  KKLTDWENHRTQSEYENSLILKVFLD----------------------------------  174

Query  250  LHSSISTEFQVDTSRFQQEVIYLSVTGQVVSFGEEVILPYVKKVIWRKWRDYRLQKTQAG  309
                          R + ++  + VT Q+++   EV+LPY+K+   +K +          
Sbjct  175  --------------RLRIQLAIIMVTKQIINNITEVVLPYLKRKRRKKRKK---------  211

Query  310  RPRRHSKMTDLLLIDSPSEAAFLTRIRNEAEADEYNVHEDTLEMCVQYGYLALFGVAWPL  369
              ++  +   + + D P E+ FL R+  E E + Y+  +D LEM +Q+GY+ LF  A+PL
Sbjct  212  --KKKKEEPSVSIKDEPEESEFLERVEKEYELEPYDGLDDYLEMVIQFGYVTLFSAAFPL  269

Query  370  VPLLFLINNWLELRGDFFKLTLECQRPPPIRADSIGPSLQGLEFLTWLGTLSTASIVYLY  429
             PL  L+NN +E+R D FKL  E +RP P RADSIGP L  LEFL+WL  ++ A+++Y +
Sbjct  270  APLFALLNNIIEIRSDAFKLCTELRRPVPERADSIGPWLNILEFLSWLAVITNAALIYAF  329

Query  430  RDGMKEVHMSSLLLVLFIAQQVYLAVRFAVRTGLQKLGSGTLRREAAKR  478
                    ++ LL  + + + V L ++F +   +  +    +R+E  + 
Sbjct  330  TSDQYWSLLALLLAFVIVFEHVVLLLKFLIAWLIPDV-PEWVRKERKRE  377



Lambda      K        H        a         alpha
   0.323    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 715831012


Query= TCONS_00029573

Length=864
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter. T...  258     8e-81


>CDD:461997 pfam06738, ThrE, Putative threonine/serine exporter.  ThrE is 
a family of bacterial and Archaeal proteins that catalyze the 
export of L-threonine from the cell. UniProtKB:Q79VD1 has 
been characterized as being necessary for this export. The 
domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent 
efflux of threonine and serine.
Length=241

 Score = 258 bits (662),  Expect = 8e-81, Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 133/253 (53%), Gaps = 13/253 (5%)

Query  421  RYIMQLCKALMTFGAPTHRLEEYMQMTAKVLEV-DSQYLYFPGCMIMSFDDPSTRTTEVK  479
             + ++  + L+  GA T+R+E+ M   A+ L + + +    P  +I+SFDD     T V+
Sbjct  1    DFALRAGRILLESGAETYRVEDTMNRIARALGIDECEVFVTPTGIIISFDDDDESITTVR  60

Query  480  LVRVAQGINLQKLANTHRIYKNVVHDVIGVEEAIQELEDIQKKPPRFNKWIVVLVYGLAS  539
             VR  +GINL+KL+  + + + +VH  I +EEA + L++I++ PPR+ +W+VVL  GLAS
Sbjct  61   RVRS-RGINLEKLSEVNELSRRIVHGEISLEEAEKRLDEIERSPPRYPRWLVVLAAGLAS  119

Query  540  ATVGPFAFNARPIDMPIIFFNGCLLGLMQQVFAPRSALYSNVFEVTAAVLTSFLARAFGS  599
            A      F    ID  + F  G L GL++ V   R  L S  FE  AA + S LA    S
Sbjct  120  AAFALL-FGGDWIDFLVAFLAGGLGGLLRLVL-NRRGLNSFFFEAVAAFVASLLALLAVS  177

Query  600  IPKAVIDGKRQFLFCFSAIAQSSIALILPGFLVLCSSLELQSHQIIAGSIRMVYAIIYSL  659
            +                AI   SI L++PG  +  +  +L +  +++G  R+V AI+ +L
Sbjct  178  LG---------LGINPDAIIIGSIMLLVPGLPLTNAVRDLIAGDLVSGLARLVEAILIAL  228

Query  660  FLGYGITVGTTIY  672
             + +GI +   + 
Sbjct  229  AIAFGIALALALL  241



Lambda      K        H        a         alpha
   0.315    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1103910266


Query= TCONS_00034485

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.110    0.279    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00029575

Length=271


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.117    0.315    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00029577

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.301    0.109    0.276    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0736    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00029578

Length=443


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00029579

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425503 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding d...  70.0    2e-15
CDD:459646 pfam00042, Globin, Globin                                  56.9    9e-11


>CDD:425503 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain. 
 Xanthine dehydrogenases, that also bind FAD/NAD, have essentially 
no similarity.
Length=109

 Score = 70.0 bits (172),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query  276  LLSAGVGLTPMTSILNTLTSQA-PERKVSFIHGARNARARAFKNHITSLEQKLPNLKSTF  334
            +++ G G+ P+ S+L  +        +V  + G RN     ++  +  L +K P      
Sbjct  1    MIAGGTGIAPVRSMLRAILEDPKDPTQVVLVFGNRNEDDILYREELDELAEKHPGR----  56

Query  335  FTSHPTEEDKEGDDYQFRGRVDLSQLDSNRDLFLDDATTEYYVCGPDTFMTD  386
             T        E      +GRV  + L+    L L D  T  YVCGP   +  
Sbjct  57   LTVVYVVSRPEAGWTGGKGRVQDALLE--DHLSLPDEETHVYVCGPPGMIKA  106


>CDD:459646 pfam00042, Globin, Globin.  
Length=117

 Score = 56.9 bits (138),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 11/116 (9%)

Query  29   FYKNMLTAHPELNNVFNTTHQVTG---------HQARALAGALFAYASNIDNLGALGPAV  79
                + TA+P+    F    +               + +  AL     ++D+L AL  A+
Sbjct  3    ILARLFTAYPDTKAYFPRFEKSADDLKGSPKFKAHGKKVLAALGEAVKHLDDLAALNAAL  62

Query  80   ELMCHKHA-SLYIKPDDYKIVGKFLLEAMGQVLGDALTPEILDAWATAYWQLADIM  134
            + +  +H     + P ++K+ G+ LL  + + LG+  TPE   AW  A   +A  +
Sbjct  63   KKLGARHKEKRGVDPANFKLFGEALLVVLAEHLGEF-TPETKAAWDKALDVIAAAL  117



Lambda      K        H        a         alpha
   0.318    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00034486

Length=397


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00029580

Length=397


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00029581

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425503 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding d...  70.0    2e-15
CDD:459646 pfam00042, Globin, Globin                                  56.9    9e-11


>CDD:425503 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain. 
 Xanthine dehydrogenases, that also bind FAD/NAD, have essentially 
no similarity.
Length=109

 Score = 70.0 bits (172),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query  276  LLSAGVGLTPMTSILNTLTSQA-PERKVSFIHGARNARARAFKNHITSLEQKLPNLKSTF  334
            +++ G G+ P+ S+L  +        +V  + G RN     ++  +  L +K P      
Sbjct  1    MIAGGTGIAPVRSMLRAILEDPKDPTQVVLVFGNRNEDDILYREELDELAEKHPGR----  56

Query  335  FTSHPTEEDKEGDDYQFRGRVDLSQLDSNRDLFLDDATTEYYVCGPDTFMTD  386
             T        E      +GRV  + L+    L L D  T  YVCGP   +  
Sbjct  57   LTVVYVVSRPEAGWTGGKGRVQDALLE--DHLSLPDEETHVYVCGPPGMIKA  106


>CDD:459646 pfam00042, Globin, Globin.  
Length=117

 Score = 56.9 bits (138),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 11/116 (9%)

Query  29   FYKNMLTAHPELNNVFNTTHQVTG---------HQARALAGALFAYASNIDNLGALGPAV  79
                + TA+P+    F    +               + +  AL     ++D+L AL  A+
Sbjct  3    ILARLFTAYPDTKAYFPRFEKSADDLKGSPKFKAHGKKVLAALGEAVKHLDDLAALNAAL  62

Query  80   ELMCHKHA-SLYIKPDDYKIVGKFLLEAMGQVLGDALTPEILDAWATAYWQLADIM  134
            + +  +H     + P ++K+ G+ LL  + + LG+  TPE   AW  A   +A  +
Sbjct  63   KKLGARHKEKRGVDPANFKLFGEALLVVLAEHLGEF-TPETKAAWDKALDVIAAAL  117



Lambda      K        H        a         alpha
   0.318    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00029583

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00029582

Length=397


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 478429336


Query= TCONS_00029584

Length=641
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  114     6e-29
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  60.8    1e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 114 bits (286),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 67/264 (25%), Positives = 115/264 (44%), Gaps = 32/264 (12%)

Query  174  IDLYFAWEQPWYQIVDEDLFRDSM----ANRGRYFTPLLLYSILAMGSRYSDRIETRTDA  229
            +DL+F    P + I+    F        ++   Y +PLLL +ILA+G+ +S+    R+ +
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  230  NDPNTAG---RFFLEQAKTLLHREME--RPSLTTIQALGLIGMFYIATGADAAGWLHHGM  284
            +  + A     FFL +A  L+H +      SL  +QAL L+ ++ + TG     W +HG+
Sbjct  61   SLTDEAADGIHFFL-RALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGL  119

Query  285  ANRLSLDMGLNLDPAAFEGAVSMSSKEMQLRRQIYWTLYCHDKLSASYTGR----VCSML  340
            A RL+  +GL+ DP+    +  +  +E +LRR+++W  +  D+L +   GR      S +
Sbjct  120  AIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDI  179

Query  341  DVQ--------------GAVNLPSHAEASCSRQQTILSLQIALIRICQ-VHERILMSLWA  385
            D+                 V LP  +  S S +       I L +I   +   +L     
Sbjct  180  DLPLPCDDDDLWESDSADEVTLPLISLESKSIK--PPLFLIKLSKILSKILGSLLSIRST  237

Query  386  PKPSLNQHQRPAFLELCLLDLKTW  409
                  Q +     EL    L  W
Sbjct  238  LDQRDLQLKLSWVREL-ERALDNW  260


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 60.8 bits (148),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 19/33 (58%), Positives = 26/33 (79%), Gaps = 0/33 (0%)

Query  16  KACEECRRRRAKCDGKKPSCSRCLQWSISCQYS  48
            AC+ CR+R+ KCDGKKP+CSRC++  + C YS
Sbjct  1   TACDNCRKRKVKCDGKKPACSRCIKNGLECTYS  33



Lambda      K        H        a         alpha
   0.320    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 808184920


Query= TCONS_00029585

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  112     1e-28


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 112 bits (283),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 67/264 (25%), Positives = 115/264 (44%), Gaps = 32/264 (12%)

Query  76   IDLYFAWEQPWYQIVDEDLFRDSM----ANRGRYFTPLLLYSILAMGSRYSDRIETRTDA  131
            +DL+F    P + I+    F        ++   Y +PLLL +ILA+G+ +S+    R+ +
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  132  NDPNTAG---RFFLEQAKTLLHREME--RPSLTTIQALGLIGMFYIATGADAAGWLHHGM  186
            +  + A     FFL +A  L+H +      SL  +QAL L+ ++ + TG     W +HG+
Sbjct  61   SLTDEAADGIHFFL-RALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGL  119

Query  187  ANRLSLDMGLNLDPAAFEGAVSMSSKEMQLRRQIYWTLYCHDKLSASYTGR----VCSML  242
            A RL+  +GL+ DP+    +  +  +E +LRR+++W  +  D+L +   GR      S +
Sbjct  120  AIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDI  179

Query  243  DVQ--------------GAVNLPSHAEASCSRQQTILSLQIALIRICQ-VHERILMSLWA  287
            D+                 V LP  +  S S +       I L +I   +   +L     
Sbjct  180  DLPLPCDDDDLWESDSADEVTLPLISLESKSIK--PPLFLIKLSKILSKILGSLLSIRST  237

Query  288  PKPSLNQHQRPAFLELCLLDLKTW  311
                  Q +     EL    L  W
Sbjct  238  LDQRDLQLKLSWVREL-ERALDNW  260



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684357832


Query= TCONS_00029586

Length=179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  58.7    2e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 58.7 bits (142),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 30/109 (28%), Positives = 55/109 (50%), Gaps = 10/109 (9%)

Query  76   IDLYFAWEQPWYQIVDEDLFRDSM----ANRGRYFTPLLLYSILAMGSRYSDRIETRTDA  131
            +DL+F    P + I+    F        ++   Y +PLLL +ILA+G+ +S+    R+ +
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSS  60

Query  132  NDPNTAG---RFFLEQAKTLLHREME--RPSLTTIQALGLIGMFYIVSS  175
            +  + A     FFL +A  L+H +      SL  +QAL L+ ++ + + 
Sbjct  61   SLTDEAADGIHFFL-RALILIHEDFSSPSSSLWILQALLLLELYELGTG  108



Lambda      K        H        a         alpha
   0.321    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00029587

Length=299


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00029588

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00029589

Length=299


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00029590

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398829 pfam05368, NmrA, NmrA-like family. NmrA is a negative ...  85.9    3e-20
CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding                 59.9    2e-11


>CDD:398829 pfam05368, NmrA, NmrA-like family.  NmrA is a negative transcriptional 
regulator involved in the post-translational modification 
of the transcription factor AreA. NmrA is part of a 
system controlling nitrogen metabolite repression in fungi. 
This family only contains a few sequences as iteration results 
in significant matches to other Rossmann fold families.
Length=236

 Score = 85.9 bits (213),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 62/251 (25%), Positives = 100/251 (40%), Gaps = 32/251 (13%)

Query  5    IGIFPASGGLGTSIINHLVKL---VPASQLILIARNPEK--LASFSRDGATIRRADYDDR  59
            I +F A+G  G S++   +K    V A     + R+P+     S    G  + + D DD+
Sbjct  1    ILVFGATGQQGGSVVRASLKAGHKVRA-----LVRDPKSELAKSLKEAGVELVKGDLDDK  55

Query  60   ASLERVFDGVGVLMLISYASFEIQHRVEAHKAAIDAARRSGVKHIFYSSLAFAGDLGESS  119
             SL     GV V+   S   F     +E  K   DAA+ +GVKH   SS     D+    
Sbjct  56   ESLVEALKGVDVV--FSVTGFWAGKEIEDGKKLADAAKEAGVKHFIPSSFGNDNDISNGV  113

Query  120  LAHVMGAHLAT----EKYLAELPGHFTYTAIREGLYSESF-PIYTAWF--DPHQPVEEIT  172
               V   H  +    E+Y+  L     YT +  G + ++F  +    F  D   P ++ T
Sbjct  114  EPAV--PHFDSKAEIERYIRALG--IPYTFVYAGFFMQNFLSLLAPLFPGDLSPPEDKFT  169

Query  173  IPHPGTGPGV--AWAKRDELGEATAKMIYAYAKNTAGFPYLNRVVLLSGPREVSLAETAE  230
            +  PG    V        ++G     ++    K         + + L+G   +S  E AE
Sbjct  170  LLGPGNPKAVPLWMDDEHDIGTFVIAILDDPRK------LKGKRIKLAG-NTLSGNEIAE  222

Query  231  VLGRAVGKPVR  241
            +  +  GK V+
Sbjct  223  LFSKKTGKTVK  233


>CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding.  
Length=183

 Score = 59.9 bits (146),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 35/148 (24%), Positives = 53/148 (36%), Gaps = 18/148 (12%)

Query  10   ASGGLGTSIINHLVKLVPAS-QLILIARNPEKLASF-SRDGATIRRADYDDRASLERVFD  67
            A+G +G  ++  L+       ++  + RNPEKLA      G  +   D  D   L     
Sbjct  2    ATGKIGRLLVKQLLA---RGHEVTALVRNPEKLADLEDHPGVEVVDGDVLDPDDLAEALA  58

Query  68   GVGVLMLISYASFEIQHRVEAHKAAIDAARRSGVKHIFYSSLAFAGD--------LGESS  119
            G   + + +             K  IDAA+ +GVK     S    GD          +  
Sbjct  59   GQDAV-ISALGGGGT--DETGAKNIIDAAKAAGVKRFVLVSSLGVGDEVPGPFGPWNKEM  115

Query  120  LAHVMGAHLATEKYLAELPGHFTYTAIR  147
            L   + A  A E+ L        YT +R
Sbjct  116  LGPYLAAKRAAEELLRA--SGLDYTIVR  141



Lambda      K        H        a         alpha
   0.319    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00029591

Length=282


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00029592

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:284851 pfam07519, Tannase, Tannase and feruloyl esterase. Thi...  501     1e-174


>CDD:284851 pfam07519, Tannase, Tannase and feruloyl esterase.  This family 
includes fungal tannase and feruloyl esterase. It also includes 
several bacterial homologs of unknown function.
Length=460

 Score = 501 bits (1291),  Expect = 1e-174, Method: Composition-based stats.
 Identities = 194/513 (38%), Positives = 259/513 (50%), Gaps = 70/513 (14%)

Query  78   CNVTVTYTHPGKGDKVVVKYAFPQPSDFKNRFYVAGGGGYSLSSDATGG--------LEY  129
            C VT     P  G    + +    PSD+  RF   GGGG++ +   T G        L  
Sbjct  1    CRVT-GNISPVDGSAPQIGFEVWLPSDWNGRFLQVGGGGFAGNIQTTTGQVGMLPFALAR  59

Query  130  GAASGATDAGYDAFSYSYDEVVLYGNGSINWDATYMFAYQALGEMTTLGKTLTRNFYGLS  189
            G A+  TDAG+DA        V    G +N +A   FAY+AL + T +GK LT+ FYG S
Sbjct  60   GFATAGTDAGHDAS-------VDASFG-LNPEARADFAYRALHKTTVVGKALTKAFYGKS  111

Query  190  SDAKIYTYYEGCSDGGREGMSQVQRYGDLYDGAITGAPAFRYAQQQVHHVFSSVVEKT--  247
             D   Y+Y+EGCSDGGREG++  QR+ D YDG I GAPAF + Q Q+   FS+   +   
Sbjct  112  PD---YSYFEGCSDGGREGLTAAQRWPDDYDGIIAGAPAFNFVQLQLWGAFSARATQGDD  168

Query  248  LDYYPPPCELAKIVNATIEACDPLDGRTDGVVSRTDLCKLHFDLSKIIGEPYYCAAKTST  307
            LD + PP EL  I NA + ACD LDG  DG+V   DLC+  F       E  YC+     
Sbjct  169  LDGWIPPAELKVIHNAILAACDALDGVADGLVQDPDLCRFAFA-----VEVLYCSGSNGD  223

Query  308  SLGFGFSKRQAAGSTTSYQPAQNGTVTKEGVAVAKAIYDGLHNTQGQRAYLSWQIASEFS  367
            S                        +T   +AV  AIY G  N+ G+R Y  W  A E S
Sbjct  224  S-----------------------CLTAAQIAVVNAIYAGPVNSSGERLYPGWNYAGELS  260

Query  368  DATTEWNNDTGSWELSI----PSTGGEFVTKFVQLLDLDNLSTLDNVTYDTLVEWMNTAM  423
            DA  E  +D   WEL       S   E V KF + L+LD   +L   T   L + MNT +
Sbjct  261  DAAGEEPSDWAKWELGSQVPHYSRAEEAVRKFARDLNLDT-LSLKLET---LKDRMNTGL  316

Query  424  VRYMDSLQTTVPDLTTFKSSGGKLLHYHGESDPSIPAASSVHYWQSVRSIMYPGVSAAKS  483
            V   D +  T PDL+ F+S GGKL+ YHG +DPS+    S+HY++SV + M        +
Sbjct  317  VPLSDLIDATDPDLSPFRSRGGKLILYHGTADPSVSPLDSIHYYESVEAKM------GAA  370

Query  484  LKELQEWYQFYLIPGAAHCGANSLQPGPYPQNNMDIMIDWVENGVQPSRLNTTVSSGDY-  542
            L   +++Y+FYL+PG AHCG  S   G    +N+  M+DWVENG  PSR+  T +S    
Sbjct  371  LAATEDFYRFYLVPGMAHCGGGSGTSGI---DNLTAMVDWVENGKAPSRIVATKASVGGT  427

Query  543  --AGETQMLCQWPTRPLWKDNSTFDCVNDEKSI  573
              AG T+ LC++P  PL+K N +    +     
Sbjct  428  WSAGRTRPLCRYPKWPLYKGNGSSTDASSFTCA  460



Lambda      K        H        a         alpha
   0.315    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 741236288


Query= TCONS_00034490

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00029593

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation...  173     6e-52


>CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation domain. 
 Members of this family are found in various subtilase propeptides, 
and adopt a ferredoxin-like fold, with an alpha+beta 
sandwich. Cleavage of the domain results in activation of 
the peptide.
Length=142

 Score = 173 bits (440),  Expect = 6e-52, Method: Composition-based stats.
 Identities = 59/143 (41%), Positives = 83/143 (58%), Gaps = 3/143 (2%)

Query  35   QGWKYSHTPSDRDPIRLQIALKQHDVEGFETALLEMSDPYHPNYGKHFQTHEEMKRMLLP  94
             GW         + IRL+IALKQ +++  E  L+++S P  PNYGKH  + EE+  +  P
Sbjct  1    PGWVKVGRADPSETIRLRIALKQRNLDQLEQLLMDVSTPGSPNYGKHL-SPEEVASLFAP  59

Query  95   TQEAVESVRGWLESAGISDIEE--DADWIKFRTTVGVANDLLDADFKWYVNEVGHVERLR  152
            + E V +V  WLESAGI+      + DWI F  TV  A  L   +F +Y ++ G   RLR
Sbjct  60   SDETVNAVLAWLESAGITITRISANGDWITFTGTVAQAESLFGTEFHYYSHKNGGTTRLR  119

Query  153  TLAYSLPQSVASHVNMVQPTTRF  175
            TL  S+P ++A HV+ +QP TRF
Sbjct  120  TLEPSVPAALADHVDGIQPLTRF  142



Lambda      K        H        a         alpha
   0.316    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 762158280


Query= TCONS_00034491

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation...  173     6e-52


>CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation domain. 
 Members of this family are found in various subtilase propeptides, 
and adopt a ferredoxin-like fold, with an alpha+beta 
sandwich. Cleavage of the domain results in activation of 
the peptide.
Length=142

 Score = 173 bits (440),  Expect = 6e-52, Method: Composition-based stats.
 Identities = 59/143 (41%), Positives = 83/143 (58%), Gaps = 3/143 (2%)

Query  35   QGWKYSHTPSDRDPIRLQIALKQHDVEGFETALLEMSDPYHPNYGKHFQTHEEMKRMLLP  94
             GW         + IRL+IALKQ +++  E  L+++S P  PNYGKH  + EE+  +  P
Sbjct  1    PGWVKVGRADPSETIRLRIALKQRNLDQLEQLLMDVSTPGSPNYGKHL-SPEEVASLFAP  59

Query  95   TQEAVESVRGWLESAGISDIEE--DADWIKFRTTVGVANDLLDADFKWYVNEVGHVERLR  152
            + E V +V  WLESAGI+      + DWI F  TV  A  L   +F +Y ++ G   RLR
Sbjct  60   SDETVNAVLAWLESAGITITRISANGDWITFTGTVAQAESLFGTEFHYYSHKNGGTTRLR  119

Query  153  TLAYSLPQSVASHVNMVQPTTRF  175
            TL  S+P ++A HV+ +QP TRF
Sbjct  120  TLEPSVPAALADHVDGIQPLTRF  142



Lambda      K        H        a         alpha
   0.316    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 762158280


Query= TCONS_00029594

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation...  173     6e-52


>CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation domain. 
 Members of this family are found in various subtilase propeptides, 
and adopt a ferredoxin-like fold, with an alpha+beta 
sandwich. Cleavage of the domain results in activation of 
the peptide.
Length=142

 Score = 173 bits (440),  Expect = 6e-52, Method: Composition-based stats.
 Identities = 59/143 (41%), Positives = 83/143 (58%), Gaps = 3/143 (2%)

Query  35   QGWKYSHTPSDRDPIRLQIALKQHDVEGFETALLEMSDPYHPNYGKHFQTHEEMKRMLLP  94
             GW         + IRL+IALKQ +++  E  L+++S P  PNYGKH  + EE+  +  P
Sbjct  1    PGWVKVGRADPSETIRLRIALKQRNLDQLEQLLMDVSTPGSPNYGKHL-SPEEVASLFAP  59

Query  95   TQEAVESVRGWLESAGISDIEE--DADWIKFRTTVGVANDLLDADFKWYVNEVGHVERLR  152
            + E V +V  WLESAGI+      + DWI F  TV  A  L   +F +Y ++ G   RLR
Sbjct  60   SDETVNAVLAWLESAGITITRISANGDWITFTGTVAQAESLFGTEFHYYSHKNGGTTRLR  119

Query  153  TLAYSLPQSVASHVNMVQPTTRF  175
            TL  S+P ++A HV+ +QP TRF
Sbjct  120  TLEPSVPAALADHVDGIQPLTRF  142



Lambda      K        H        a         alpha
   0.316    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 762158280


Query= TCONS_00029595

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation...  173     6e-52


>CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation domain. 
 Members of this family are found in various subtilase propeptides, 
and adopt a ferredoxin-like fold, with an alpha+beta 
sandwich. Cleavage of the domain results in activation of 
the peptide.
Length=142

 Score = 173 bits (440),  Expect = 6e-52, Method: Composition-based stats.
 Identities = 59/143 (41%), Positives = 83/143 (58%), Gaps = 3/143 (2%)

Query  35   QGWKYSHTPSDRDPIRLQIALKQHDVEGFETALLEMSDPYHPNYGKHFQTHEEMKRMLLP  94
             GW         + IRL+IALKQ +++  E  L+++S P  PNYGKH  + EE+  +  P
Sbjct  1    PGWVKVGRADPSETIRLRIALKQRNLDQLEQLLMDVSTPGSPNYGKHL-SPEEVASLFAP  59

Query  95   TQEAVESVRGWLESAGISDIEE--DADWIKFRTTVGVANDLLDADFKWYVNEVGHVERLR  152
            + E V +V  WLESAGI+      + DWI F  TV  A  L   +F +Y ++ G   RLR
Sbjct  60   SDETVNAVLAWLESAGITITRISANGDWITFTGTVAQAESLFGTEFHYYSHKNGGTTRLR  119

Query  153  TLAYSLPQSVASHVNMVQPTTRF  175
            TL  S+P ++A HV+ +QP TRF
Sbjct  120  TLEPSVPAALADHVDGIQPLTRF  142



Lambda      K        H        a         alpha
   0.316    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 762158280


Query= TCONS_00029596

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation...  173     6e-52


>CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation domain. 
 Members of this family are found in various subtilase propeptides, 
and adopt a ferredoxin-like fold, with an alpha+beta 
sandwich. Cleavage of the domain results in activation of 
the peptide.
Length=142

 Score = 173 bits (440),  Expect = 6e-52, Method: Composition-based stats.
 Identities = 59/143 (41%), Positives = 83/143 (58%), Gaps = 3/143 (2%)

Query  35   QGWKYSHTPSDRDPIRLQIALKQHDVEGFETALLEMSDPYHPNYGKHFQTHEEMKRMLLP  94
             GW         + IRL+IALKQ +++  E  L+++S P  PNYGKH  + EE+  +  P
Sbjct  1    PGWVKVGRADPSETIRLRIALKQRNLDQLEQLLMDVSTPGSPNYGKHL-SPEEVASLFAP  59

Query  95   TQEAVESVRGWLESAGISDIEE--DADWIKFRTTVGVANDLLDADFKWYVNEVGHVERLR  152
            + E V +V  WLESAGI+      + DWI F  TV  A  L   +F +Y ++ G   RLR
Sbjct  60   SDETVNAVLAWLESAGITITRISANGDWITFTGTVAQAESLFGTEFHYYSHKNGGTTRLR  119

Query  153  TLAYSLPQSVASHVNMVQPTTRF  175
            TL  S+P ++A HV+ +QP TRF
Sbjct  120  TLEPSVPAALADHVDGIQPLTRF  142



Lambda      K        H        a         alpha
   0.316    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 762158280


Query= TCONS_00034492

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation...  173     6e-52


>CDD:401284 pfam09286, Pro-kuma_activ, Pro-kumamolisin, activation domain. 
 Members of this family are found in various subtilase propeptides, 
and adopt a ferredoxin-like fold, with an alpha+beta 
sandwich. Cleavage of the domain results in activation of 
the peptide.
Length=142

 Score = 173 bits (440),  Expect = 6e-52, Method: Composition-based stats.
 Identities = 59/143 (41%), Positives = 83/143 (58%), Gaps = 3/143 (2%)

Query  35   QGWKYSHTPSDRDPIRLQIALKQHDVEGFETALLEMSDPYHPNYGKHFQTHEEMKRMLLP  94
             GW         + IRL+IALKQ +++  E  L+++S P  PNYGKH  + EE+  +  P
Sbjct  1    PGWVKVGRADPSETIRLRIALKQRNLDQLEQLLMDVSTPGSPNYGKHL-SPEEVASLFAP  59

Query  95   TQEAVESVRGWLESAGISDIEE--DADWIKFRTTVGVANDLLDADFKWYVNEVGHVERLR  152
            + E V +V  WLESAGI+      + DWI F  TV  A  L   +F +Y ++ G   RLR
Sbjct  60   SDETVNAVLAWLESAGITITRISANGDWITFTGTVAQAESLFGTEFHYYSHKNGGTTRLR  119

Query  153  TLAYSLPQSVASHVNMVQPTTRF  175
            TL  S+P ++A HV+ +QP TRF
Sbjct  120  TLEPSVPAALADHVDGIQPLTRF  142



Lambda      K        H        a         alpha
   0.316    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 762158280


Query= TCONS_00034493

Length=335


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00029597

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00029599

Length=335


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00029598

Length=228


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00034494

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00029600

Length=290


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00034495

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00029601

Length=335


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00029602

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00029603

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00029604

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00029605

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  123     7e-35


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 123 bits (312),  Expect = 7e-35, Method: Composition-based stats.
 Identities = 59/174 (34%), Positives = 73/174 (42%), Gaps = 28/174 (16%)

Query  67   LYLIRHAETVDNVAHRLAGVKDSPLTNHGALQIIRLGRYFASQNIKFSHIFSSDLSRAIR  126
            LYL+RH ET  N+  R  G  DSPLT  G  Q   L    A     F  I+SS L RA +
Sbjct  1    LYLVRHGETEWNLEGRFQGRTDSPLTELGREQAEALAERLA--GEPFDAIYSSPLKRARQ  58

Query  127  TAEGLSSHQPELSPVLLPSLRERDFGSFEGQ-------------KWHSTWESSIVPKQPE  173
            TAE ++     L   + P LRE DFG +EG                     +   P   E
Sbjct  59   TAEIIAEALG-LPVEIDPRLREIDFGDWEGLTFEEIAERYPEEYDAWLADPADYRPPGGE  117

Query  174  SEASMRQRANTFLTDYLVPLLLAGDEAGDEAGDEAVVAVVSHGLLLRSLWRALL  227
            S A +R R    L +      LA    G        V VVSHG ++R+L   LL
Sbjct  118  SLADVRARVRAALEE------LAARHPGKT------VLVVSHGGVIRALLAHLL  159



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00029606

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfami...  123     7e-35


>CDD:459751 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 
1).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches. The larger 
branch 1 contains a wide variety of catalytic functions, 
the best known being fructose 2,6-bisphosphatase (found in 
a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent 
phosphoglycerate mutase. The latter is an unusual 
example of a mutase activity in the superfamily: the vast 
majority of members appear to be phosphatases. The bacterial 
regulatory protein phosphatase SixA is also in branch 1 
and has a minimal, and possible ancestral-like structure, lacking 
the large domain insertions that contribute to binding 
of small molecules in branch 1 members.
Length=194

 Score = 123 bits (312),  Expect = 7e-35, Method: Composition-based stats.
 Identities = 59/174 (34%), Positives = 73/174 (42%), Gaps = 28/174 (16%)

Query  67   LYLIRHAETVDNVAHRLAGVKDSPLTNHGALQIIRLGRYFASQNIKFSHIFSSDLSRAIR  126
            LYL+RH ET  N+  R  G  DSPLT  G  Q   L    A     F  I+SS L RA +
Sbjct  1    LYLVRHGETEWNLEGRFQGRTDSPLTELGREQAEALAERLA--GEPFDAIYSSPLKRARQ  58

Query  127  TAEGLSSHQPELSPVLLPSLRERDFGSFEGQ-------------KWHSTWESSIVPKQPE  173
            TAE ++     L   + P LRE DFG +EG                     +   P   E
Sbjct  59   TAEIIAEALG-LPVEIDPRLREIDFGDWEGLTFEEIAERYPEEYDAWLADPADYRPPGGE  117

Query  174  SEASMRQRANTFLTDYLVPLLLAGDEAGDEAGDEAVVAVVSHGLLLRSLWRALL  227
            S A +R R    L +      LA    G        V VVSHG ++R+L   LL
Sbjct  118  SLADVRARVRAALEE------LAARHPGKT------VLVVSHGGVIRALLAHLL  159



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00029608

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A              136     4e-37
CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal...  63.4    2e-13


>CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A.  
Length=284

 Score = 136 bits (345),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 103/205 (50%), Gaps = 31/205 (15%)

Query  1    MGTREPSCAGVPQT-KLAACDAKTFAEWGADSLKYDNCYSDAATNYPNVNYEPSTSPRPR  59
            +GT+  +CAG P +      DAKTFA+WG D LK+D CYS+                   
Sbjct  99   VGTK--TCAGYPGSLGYYDIDAKTFADWGVDLLKFDGCYSN-----------LEDLVEG-  144

Query  60   YEIMSSALARVGRPILFQICEW----GIDFPALWAPALG---NSWRIGNDIIPAWRSIFR  112
            Y  MS AL + GRPI++  CEW    G     +    +    N WR  +DI  +W S+  
Sbjct  145  YPNMSFALNKTGRPIVYS-CEWPLYMGGLPQQVNYTEIRKYCNHWRNYDDIQDSWDSVKS  203

Query  113  TLNQAVPNTD----FAGPGQWADLDMLYVGNGVFSLPEEQTHFSLWAILKSPLTIGAALK  168
             ++    N D     AGPG W D DML +GN   S  +++T  +LWAI+ +PL +   L+
Sbjct  204  IVDWFADNQDVFVPAAGPGGWNDPDMLIIGNFGLSYDQQRTQMALWAIMAAPLFMSNDLR  263

Query  169  DDDTSISQASLEVLKQKDVIGFNQD  193
                SIS  +  +L+ KDVI  NQD
Sbjct  264  ----SISPEAKAILQNKDVIAINQD  284


>CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal beta sandwich 
domain.  This domain is found at the C-terminus of alpha 
galactosidase enzymes.
Length=74

 Score = 63.4 bits (155),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query  207  DEGYEVWSGPLSGNRTVVAVINWRNESRDLTLDLPDVGLQYAQV--ARNIWGKTVVRDVR  264
            D   +VW+ PLS     VA+ N R     +T+DL D+GL  A     R++W    +    
Sbjct  1    DGDLQVWAKPLSNGDVAVALFN-RGGPSTVTVDLSDLGLPGASSYSVRDLWTGKDL--GT  57

Query  265  TSYTAGVAGHGTILLEL  281
             S +A V  HG  LL L
Sbjct  58   GSTSATVPPHGVALLRL  74



Lambda      K        H        a         alpha
   0.314    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 663160908


Query= TCONS_00029607

Length=663
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A              214     2e-65
CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal...  63.8    2e-13


>CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A.  
Length=284

 Score = 214 bits (548),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 106/304 (35%), Positives = 146/304 (48%), Gaps = 41/304 (13%)

Query  45   TPQMGWNSYNYYSCS------PN----EAIIRSNAKALVDLGLAELGYRYVTTDCGWSVA  94
            TP MGW  +  + C+      P     E +    A  + + G  + GY YV  D  W   
Sbjct  1    TPPMGWLHWERFRCNIDCDDDPENCISEQLFMQMADRMAEDGWKDAGYEYVCIDDCWMSK  60

Query  95   DRLPNGTLTWNETLFPSGFPAMGEYLHELGLLFGVYGDSGTKLCGSPPDQVGSLYHEEQD  154
            +R   G L  +   FPSG   + +Y+H  GL  G+Y D GTK C   P   GSL + + D
Sbjct  61   ERDKQGRLQADPKRFPSGIKKLADYVHSKGLKLGIYADVGTKTCAGYP---GSLGYYDID  117

Query  155  AKTFAEWGADSLKYDNCYSDAATNYPNVNYEPSTSPRPRYEIMSSALARVGRPILFQICE  214
            AKTFA+WG D LK+D CYS+                   Y  MS AL + GRPI++  CE
Sbjct  118  AKTFADWGVDLLKFDGCYSN-----------LEDLVEG-YPNMSFALNKTGRPIVYS-CE  164

Query  215  W----GIDFPALWAPALG---NSWRIGNDIIPAWRSIFRTLNQAVPNTD----FAGPGQW  263
            W    G     +    +    N WR  +DI  +W S+   ++    N D     AGPG W
Sbjct  165  WPLYMGGLPQQVNYTEIRKYCNHWRNYDDIQDSWDSVKSIVDWFADNQDVFVPAAGPGGW  224

Query  264  ADLDMLYVGNGVFSLPEEQTHFSLWAILKSPLTIGAALKDDDTSISQASLEVLKQKDVIG  323
             D DML +GN   S  +++T  +LWAI+ +PL +   L+    SIS  +  +L+ KDVI 
Sbjct  225  NDPDMLIIGNFGLSYDQQRTQMALWAIMAAPLFMSNDLR----SISPEAKAILQNKDVIA  280

Query  324  FNQD  327
             NQD
Sbjct  281  INQD  284


>CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal beta sandwich 
domain.  This domain is found at the C-terminus of alpha 
galactosidase enzymes.
Length=74

 Score = 63.8 bits (156),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query  341  DEGYEVWSGPLSGNRTVVAVINWRNESRDLTLDLPDVGLQYAQV--ARNIWGKTVVRDVR  398
            D   +VW+ PLS     VA+ N R     +T+DL D+GL  A     R++W    +    
Sbjct  1    DGDLQVWAKPLSNGDVAVALFN-RGGPSTVTVDLSDLGLPGASSYSVRDLWTGKDL--GT  57

Query  399  TSYTAGVAGHGTILLEL  415
             S +A V  HG  LL L
Sbjct  58   GSTSATVPPHGVALLRL  74



Lambda      K        H        a         alpha
   0.315    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 840630300


Query= TCONS_00029609

Length=610
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A              201     2e-60
CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal...  63.0    3e-13


>CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A.  
Length=284

 Score = 201 bits (512),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 98/270 (36%), Positives = 134/270 (50%), Gaps = 31/270 (11%)

Query  16   AKALVDLGLAELGYRYVTTDCGWSVADRLPNGTLTWNETLFPSGFPAMGEYLHELGLLFG  75
            A  + + G  + GY YV  D  W   +R   G L  +   FPSG   + +Y+H  GL  G
Sbjct  35   ADRMAEDGWKDAGYEYVCIDDCWMSKERDKQGRLQADPKRFPSGIKKLADYVHSKGLKLG  94

Query  76   VYGDSGTKLCGSPPDQVGSLYHEEQDAKTFAEWGADSLKYDNCYSDAATNYPNVNYEPST  135
            +Y D GTK C   P   GSL + + DAKTFA+WG D LK+D CYS+              
Sbjct  95   IYADVGTKTCAGYP---GSLGYYDIDAKTFADWGVDLLKFDGCYSN-----------LED  140

Query  136  SPRPRYEIMSSALARVGRPILFQICEW----GIDFPALWAPALG---NSWRIGNDIIPAW  188
                 Y  MS AL + GRPI++  CEW    G     +    +    N WR  +DI  +W
Sbjct  141  LVEG-YPNMSFALNKTGRPIVYS-CEWPLYMGGLPQQVNYTEIRKYCNHWRNYDDIQDSW  198

Query  189  RSIFRTLNQAVPNTD----FAGPGQWADLDMLYVGNGVFSLPEEQTHFSLWAILKSPLTI  244
             S+   ++    N D     AGPG W D DML +GN   S  +++T  +LWAI+ +PL +
Sbjct  199  DSVKSIVDWFADNQDVFVPAAGPGGWNDPDMLIIGNFGLSYDQQRTQMALWAIMAAPLFM  258

Query  245  GAALKDDDTSISQASLEVLKQKDVIGFNQD  274
               L+    SIS  +  +L+ KDVI  NQD
Sbjct  259  SNDLR----SISPEAKAILQNKDVIAINQD  284


>CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal beta sandwich 
domain.  This domain is found at the C-terminus of alpha 
galactosidase enzymes.
Length=74

 Score = 63.0 bits (154),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query  288  DEGYEVWSGPLSGNRTVVAVINWRNESRDLTLDLPDVGLQYAQV--ARNIWGKTVVRDVR  345
            D   +VW+ PLS     VA+ N R     +T+DL D+GL  A     R++W    +    
Sbjct  1    DGDLQVWAKPLSNGDVAVALFN-RGGPSTVTVDLSDLGLPGASSYSVRDLWTGKDL--GT  57

Query  346  TSYTAGVAGHGTILLEL  362
             S +A V  HG  LL L
Sbjct  58   GSTSATVPPHGVALLRL  74



Lambda      K        H        a         alpha
   0.315    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 774113704


Query= TCONS_00029612

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A              113     1e-31


>CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A.  
Length=284

 Score = 113 bits (285),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 85/189 (45%), Gaps = 44/189 (23%)

Query  1    MGEYLHELGLLFGVYGDSGTKLCGSPPDQVGSLCKSPSSMILTLANVPDHEEQDAKTFAE  60
            + +Y+H  GL  G+Y D GTK C   P   GSL                + + DAKTFA+
Sbjct  82   LADYVHSKGLKLGIYADVGTKTCAGYP---GSL---------------GYYDIDAKTFAD  123

Query  61   WGADSLKYDNCYSDAATNYPNVNYEPSTSPRPRYEIMSSALARVGRPILFQICEW----G  116
            WG D LK+D CYS+                   Y  MS AL + GRPI++  CEW    G
Sbjct  124  WGVDLLKFDGCYSN-----------LEDLVEG-YPNMSFALNKTGRPIVYS-CEWPLYMG  170

Query  117  IDFPALWAPALG---NSWRIGNDIIPAWRSIFRTLNQAVPNTD----FAGPGQWADLDML  169
                 +    +    N WR  +DI  +W S+   ++    N D     AGPG W D DML
Sbjct  171  GLPQQVNYTEIRKYCNHWRNYDDIQDSWDSVKSIVDWFADNQDVFVPAAGPGGWNDPDML  230

Query  170  YVGNGVFSL  178
             +GN  F L
Sbjct  231  IIGN--FGL  237



Lambda      K        H        a         alpha
   0.318    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00029610

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A              205     2e-61
CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal...  64.2    2e-13


>CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A.  
Length=284

 Score = 205 bits (523),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 146/319 (46%), Gaps = 56/319 (18%)

Query  45   TPQMGWNSYNYYSCS------PN----EAIIRSNAKALVDLGLAELGYRYVTTDCGWSVA  94
            TP MGW  +  + C+      P     E +    A  + + G  + GY YV  D  W   
Sbjct  1    TPPMGWLHWERFRCNIDCDDDPENCISEQLFMQMADRMAEDGWKDAGYEYVCIDDCWMSK  60

Query  95   DRLPNGTLTWNETLFPSGFPAMGEYLHELGLLFGVYGDSGTKLCGSPPDQVGSLCKSPSS  154
            +R   G L  +   FPSG   + +Y+H  GL  G+Y D GTK C   P   GSL      
Sbjct  61   ERDKQGRLQADPKRFPSGIKKLADYVHSKGLKLGIYADVGTKTCAGYP---GSL------  111

Query  155  MILTLANVPDHEEQDAKTFAEWGADSLKYDNCYSDAATNYPNVNYEPSTSPRPRYEIMSS  214
                      + + DAKTFA+WG D LK+D CYS+                   Y  MS 
Sbjct  112  ---------GYYDIDAKTFADWGVDLLKFDGCYSN-----------LEDLVEG-YPNMSF  150

Query  215  ALARVGRPILFQICEW----GIDFPALWAPALG---NSWRIGNDIIPAWRSIFRTLNQAV  267
            AL + GRPI++  CEW    G     +    +    N WR  +DI  +W S+   ++   
Sbjct  151  ALNKTGRPIVYS-CEWPLYMGGLPQQVNYTEIRKYCNHWRNYDDIQDSWDSVKSIVDWFA  209

Query  268  PNTD----FAGPGQWADLDMLYVGNGVFSLPEEQTHFSLWAILKSPLTIGAALKDDDTSI  323
             N D     AGPG W D DML +GN   S  +++T  +LWAI+ +PL +   L+    SI
Sbjct  210  DNQDVFVPAAGPGGWNDPDMLIIGNFGLSYDQQRTQMALWAIMAAPLFMSNDLR----SI  265

Query  324  SQASLEVLKQKDVIGFNQD  342
            S  +  +L+ KDVI  NQD
Sbjct  266  SPEAKAILQNKDVIAINQD  284


>CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal beta sandwich 
domain.  This domain is found at the C-terminus of alpha 
galactosidase enzymes.
Length=74

 Score = 64.2 bits (157),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query  356  DEGYEVWSGPLSGNRTVVAVINWRNESRDLTLDLPDVGLQYAQV--ARNIWGKTVVRDVR  413
            D   +VW+ PLS     VA+ N R     +T+DL D+GL  A     R++W    +    
Sbjct  1    DGDLQVWAKPLSNGDVAVALFN-RGGPSTVTVDLSDLGLPGASSYSVRDLWTGKDL--GT  57

Query  414  TSYTAGVAGHGTILLEL  430
             S +A V  HG  LL L
Sbjct  58   GSTSATVPPHGVALLRL  74



Lambda      K        H        a         alpha
   0.315    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 862752150


Query= TCONS_00029611

Length=663
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A              214     2e-65
CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal...  63.8    2e-13


>CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A.  
Length=284

 Score = 214 bits (548),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 106/304 (35%), Positives = 146/304 (48%), Gaps = 41/304 (13%)

Query  45   TPQMGWNSYNYYSCS------PN----EAIIRSNAKALVDLGLAELGYRYVTTDCGWSVA  94
            TP MGW  +  + C+      P     E +    A  + + G  + GY YV  D  W   
Sbjct  1    TPPMGWLHWERFRCNIDCDDDPENCISEQLFMQMADRMAEDGWKDAGYEYVCIDDCWMSK  60

Query  95   DRLPNGTLTWNETLFPSGFPAMGEYLHELGLLFGVYGDSGTKLCGSPPDQVGSLYHEEQD  154
            +R   G L  +   FPSG   + +Y+H  GL  G+Y D GTK C   P   GSL + + D
Sbjct  61   ERDKQGRLQADPKRFPSGIKKLADYVHSKGLKLGIYADVGTKTCAGYP---GSLGYYDID  117

Query  155  AKTFAEWGADSLKYDNCYSDAATNYPNVNYEPSTSPRPRYEIMSSALARVGRPILFQICE  214
            AKTFA+WG D LK+D CYS+                   Y  MS AL + GRPI++  CE
Sbjct  118  AKTFADWGVDLLKFDGCYSN-----------LEDLVEG-YPNMSFALNKTGRPIVYS-CE  164

Query  215  W----GIDFPALWAPALG---NSWRIGNDIIPAWRSIFRTLNQAVPNTD----FAGPGQW  263
            W    G     +    +    N WR  +DI  +W S+   ++    N D     AGPG W
Sbjct  165  WPLYMGGLPQQVNYTEIRKYCNHWRNYDDIQDSWDSVKSIVDWFADNQDVFVPAAGPGGW  224

Query  264  ADLDMLYVGNGVFSLPEEQTHFSLWAILKSPLTIGAALKDDDTSISQASLEVLKQKDVIG  323
             D DML +GN   S  +++T  +LWAI+ +PL +   L+    SIS  +  +L+ KDVI 
Sbjct  225  NDPDMLIIGNFGLSYDQQRTQMALWAIMAAPLFMSNDLR----SISPEAKAILQNKDVIA  280

Query  324  FNQD  327
             NQD
Sbjct  281  INQD  284


>CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal beta sandwich 
domain.  This domain is found at the C-terminus of alpha 
galactosidase enzymes.
Length=74

 Score = 63.8 bits (156),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query  341  DEGYEVWSGPLSGNRTVVAVINWRNESRDLTLDLPDVGLQYAQV--ARNIWGKTVVRDVR  398
            D   +VW+ PLS     VA+ N R     +T+DL D+GL  A     R++W    +    
Sbjct  1    DGDLQVWAKPLSNGDVAVALFN-RGGPSTVTVDLSDLGLPGASSYSVRDLWTGKDL--GT  57

Query  399  TSYTAGVAGHGTILLEL  415
             S +A V  HG  LL L
Sbjct  58   GSTSATVPPHGVALLRL  74



Lambda      K        H        a         alpha
   0.315    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 840630300


Query= TCONS_00029613

Length=663
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A              214     2e-65
CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal...  63.8    2e-13


>CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A.  
Length=284

 Score = 214 bits (548),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 106/304 (35%), Positives = 146/304 (48%), Gaps = 41/304 (13%)

Query  45   TPQMGWNSYNYYSCS------PN----EAIIRSNAKALVDLGLAELGYRYVTTDCGWSVA  94
            TP MGW  +  + C+      P     E +    A  + + G  + GY YV  D  W   
Sbjct  1    TPPMGWLHWERFRCNIDCDDDPENCISEQLFMQMADRMAEDGWKDAGYEYVCIDDCWMSK  60

Query  95   DRLPNGTLTWNETLFPSGFPAMGEYLHELGLLFGVYGDSGTKLCGSPPDQVGSLYHEEQD  154
            +R   G L  +   FPSG   + +Y+H  GL  G+Y D GTK C   P   GSL + + D
Sbjct  61   ERDKQGRLQADPKRFPSGIKKLADYVHSKGLKLGIYADVGTKTCAGYP---GSLGYYDID  117

Query  155  AKTFAEWGADSLKYDNCYSDAATNYPNVNYEPSTSPRPRYEIMSSALARVGRPILFQICE  214
            AKTFA+WG D LK+D CYS+                   Y  MS AL + GRPI++  CE
Sbjct  118  AKTFADWGVDLLKFDGCYSN-----------LEDLVEG-YPNMSFALNKTGRPIVYS-CE  164

Query  215  W----GIDFPALWAPALG---NSWRIGNDIIPAWRSIFRTLNQAVPNTD----FAGPGQW  263
            W    G     +    +    N WR  +DI  +W S+   ++    N D     AGPG W
Sbjct  165  WPLYMGGLPQQVNYTEIRKYCNHWRNYDDIQDSWDSVKSIVDWFADNQDVFVPAAGPGGW  224

Query  264  ADLDMLYVGNGVFSLPEEQTHFSLWAILKSPLTIGAALKDDDTSISQASLEVLKQKDVIG  323
             D DML +GN   S  +++T  +LWAI+ +PL +   L+    SIS  +  +L+ KDVI 
Sbjct  225  NDPDMLIIGNFGLSYDQQRTQMALWAIMAAPLFMSNDLR----SISPEAKAILQNKDVIA  280

Query  324  FNQD  327
             NQD
Sbjct  281  INQD  284


>CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal beta sandwich 
domain.  This domain is found at the C-terminus of alpha 
galactosidase enzymes.
Length=74

 Score = 63.8 bits (156),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query  341  DEGYEVWSGPLSGNRTVVAVINWRNESRDLTLDLPDVGLQYAQV--ARNIWGKTVVRDVR  398
            D   +VW+ PLS     VA+ N R     +T+DL D+GL  A     R++W    +    
Sbjct  1    DGDLQVWAKPLSNGDVAVALFN-RGGPSTVTVDLSDLGLPGASSYSVRDLWTGKDL--GT  57

Query  399  TSYTAGVAGHGTILLEL  415
             S +A V  HG  LL L
Sbjct  58   GSTSATVPPHGVALLRL  74



Lambda      K        H        a         alpha
   0.315    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 840630300


Query= TCONS_00029614

Length=467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A              97.9    2e-23
CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal...  62.3    4e-13


>CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A.  
Length=284

 Score = 97.9 bits (244),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 52/142 (37%), Positives = 74/142 (52%), Gaps = 16/142 (11%)

Query  1    MSSALARVGRPILFQICEW----GIDFPALWAPALG---NSWRIGNDIIPAWRSIFRTLN  53
            MS AL + GRPI++  CEW    G     +    +    N WR  +DI  +W S+   ++
Sbjct  148  MSFALNKTGRPIVYS-CEWPLYMGGLPQQVNYTEIRKYCNHWRNYDDIQDSWDSVKSIVD  206

Query  54   QAVPNTD----FAGPGQWADLDMLYVGNGVFSLPEEQTHFSLWAILKSPLTIGAALKDDD  109
                N D     AGPG W D DML +GN   S  +++T  +LWAI+ +PL +   L+   
Sbjct  207  WFADNQDVFVPAAGPGGWNDPDMLIIGNFGLSYDQQRTQMALWAIMAAPLFMSNDLR---  263

Query  110  TSISQASLEVLKQKDVIGFNQD  131
             SIS  +  +L+ KDVI  NQD
Sbjct  264  -SISPEAKAILQNKDVIAINQD  284


>CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal beta sandwich 
domain.  This domain is found at the C-terminus of alpha 
galactosidase enzymes.
Length=74

 Score = 62.3 bits (152),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query  145  DEGYEVWSGPLSGNRTVVAVINWRNESRDLTLDLPDVGLQYAQV--ARNIWGKTVVRDVR  202
            D   +VW+ PLS     VA+ N R     +T+DL D+GL  A     R++W    +    
Sbjct  1    DGDLQVWAKPLSNGDVAVALFN-RGGPSTVTVDLSDLGLPGASSYSVRDLWTGKDL--GT  57

Query  203  TSYTAGVAGHGTILLEL  219
             S +A V  HG  LL L
Sbjct  58   GSTSATVPPHGVALLRL  74



Lambda      K        H        a         alpha
   0.315    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 578206408


Query= TCONS_00029615

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A              167     2e-48
CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal...  63.8    2e-13


>CDD:374582 pfam16499, Melibiase_2, Alpha galactosidase A.  
Length=284

 Score = 167 bits (425),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 114/223 (51%), Gaps = 31/223 (14%)

Query  1    MGEYLHELGLLFGVYGDSGTKLCGSPPDQVGSLYHEEQDAKTFAEWGADSLKYDNCYSDA  60
            + +Y+H  GL  G+Y D GTK C   P   GSL + + DAKTFA+WG D LK+D CYS+ 
Sbjct  82   LADYVHSKGLKLGIYADVGTKTCAGYP---GSLGYYDIDAKTFADWGVDLLKFDGCYSN-  137

Query  61   ATNYPNVNYEPSTSPRPRYEIMSSALARVGRPILFQICEW----GIDFPALWAPALG---  113
                              Y  MS AL + GRPI++  CEW    G     +    +    
Sbjct  138  ----------LEDLVEG-YPNMSFALNKTGRPIVYS-CEWPLYMGGLPQQVNYTEIRKYC  185

Query  114  NSWRIGNDIIPAWRSIFRTLNQAVPNTD----FAGPGQWADLDMLYVGNGVFSLPEEQTH  169
            N WR  +DI  +W S+   ++    N D     AGPG W D DML +GN   S  +++T 
Sbjct  186  NHWRNYDDIQDSWDSVKSIVDWFADNQDVFVPAAGPGGWNDPDMLIIGNFGLSYDQQRTQ  245

Query  170  FSLWAILKSPLTIGAALKDDDTSISQASLEVLKQKDVIGFNQD  212
             +LWAI+ +PL +   L+    SIS  +  +L+ KDVI  NQD
Sbjct  246  MALWAIMAAPLFMSNDLR----SISPEAKAILQNKDVIAINQD  284


>CDD:465512 pfam17801, Melibiase_C, Alpha galactosidase C-terminal beta sandwich 
domain.  This domain is found at the C-terminus of alpha 
galactosidase enzymes.
Length=74

 Score = 63.8 bits (156),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query  226  DEGYEVWSGPLSGNRTVVAVINWRNESRDLTLDLPDVGLQYAQV--ARNIWGKTVVRDVR  283
            D   +VW+ PLS     VA+ N R     +T+DL D+GL  A     R++W    +    
Sbjct  1    DGDLQVWAKPLSNGDVAVALFN-RGGPSTVTVDLSDLGLPGASSYSVRDLWTGKDL--GT  57

Query  284  TSYTAGVAGHGTILLEL  300
             S +A V  HG  LL L
Sbjct  58   GSTSATVPPHGVALLRL  74



Lambda      K        H        a         alpha
   0.314    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00029616

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00029617

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00034497

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00034498

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            76.3    9e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 76.3 bits (188),  Expect = 9e-16, Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 107/309 (35%), Gaps = 16/309 (5%)

Query  69   TFWCFLVMGANDAAYGPLIP-YLEQHYSLTYTIVSLVFLSPLGGYALAALTNNHIHLRFG  127
             F    +     +  GP +P  L +   ++ T + L+      GYALA      +  RFG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  128  RRGVAIIAPSCHVISYIINCLHPPYPVLVVSFIFAGFGNGLADSGWNAWIGNMADANQ--  185
            RR V +I      +  ++        +L+V  +  G G G       A I +     +  
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  186  -VLGLLHGFYGAGAVLAPLVATALVTKAEVGWWYFYYIMIGCAVIELTTSVYCFWDDTGA  244
              LGL+   +G GA L PL+   L +      + +    +  A++ L  +V         
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLAS-----LFGWRAAFLILAILSLLAAVLLLLPRP--  173

Query  245  VFRRDTQHSTGGTGSGGGSLRKALFTKHAGRITWLCAVFLLLYVGVEVALGGWIVTFMMR  304
                                 KAL       +     +F   + G+   L          
Sbjct  174  PPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYL-----PLYQE  228

Query  305  VRHGEPFASGMAATGFWLGITVGRVVLGFVTPRLGEKLAISVASSLFLFLGISCMLTVAD  364
            V       +G+      L   +GR++LG ++ RLG +  + +A  L +   +  +L    
Sbjct  229  VLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLT  288

Query  365  LSHLLHRLG  373
            LS L   L 
Sbjct  289  LSSLWLLLA  297



Lambda      K        H        a         alpha
   0.325    0.138    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 590476040


Query= TCONS_00029623

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            59.0    9e-11


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 59.0 bits (143),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 39/159 (25%), Positives = 63/159 (40%), Gaps = 6/159 (4%)

Query  69   TFWCFLVMGANDAAYGPLIP-YLEQHYSLTYTIVSLVFLSPLGGYALAALTNNHIHLRFG  127
             F    +     +  GP +P  L +   ++ T + L+      GYALA      +  RFG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  128  RRGVAIIAPSCHVISYIINCLHPPYPVLVVSFIFAGFGNGLADSGWNAWIGNMADANQ--  185
            RR V +I      +  ++        +L+V  +  G G G       A I +     +  
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  186  -VLGLLHGFYGAGAVLAPLVATALVTKAEVGWWYFYYIM  223
              LGL+   +G GA L PL+   L +    GW   + I+
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLAS--LFGWRAAFLIL  157



Lambda      K        H        a         alpha
   0.323    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00029618

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            69.8    1e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 69.8 bits (171),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 58/287 (20%), Positives = 100/287 (35%), Gaps = 15/287 (5%)

Query  85   LEQHYSLTYTIVSLVFLSPLGGYALAALTNNHIHLRFGRRGVAIIAPSCHVISYIINCLH  144
            L +   ++ T + L+      GYALA      +  RFGRR V +I      +  ++    
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  145  PPYPVLVVSFIFAGFGNGLADSGWNAWIGNMADANQ---VLGLLHGFYGAGAVLAPLVAT  201
                +L+V  +  G G G       A I +     +    LGL+   +G GA L PL+  
Sbjct  83   SSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGG  142

Query  202  ALVTKAEVGWWYFYYIMIGCAVIELTTSVYCFWDDTGAVFRRDTQHSTGGTGSGGGSLRK  261
             L +      + +    +  A++ L  +V                              K
Sbjct  143  LLAS-----LFGWRAAFLILAILSLLAAVLLLLPRP--PPESKRPKPAEEARLSLIVAWK  195

Query  262  ALFTKHAGRITWLCAVFLLLYVGVEVALGGWIVTFMMRVRHGEPFASGMAATGFWLGITV  321
            AL       +     +F   + G+   L          V       +G+      L   +
Sbjct  196  ALLRDPVLWLLLALLLFGFAFFGLLTYL-----PLYQEVLGLSALLAGLLLGLGGLLGAI  250

Query  322  GRVVLGFVTPRLGEKLAISVASSLFLFLGISCMLTVADLSHLLHRLG  368
            GR++LG ++ RLG +  + +A  L +   +  +L    LS L   L 
Sbjct  251  GRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLA  297



Lambda      K        H        a         alpha
   0.325    0.138    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00029619

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            68.6    3e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 68.6 bits (168),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 116/317 (37%), Gaps = 18/317 (6%)

Query  85   LEQHYSLTYTIVSLVFLSPLGGYALAALTNNHIHLRFGRRGVAIIAPSCHVISYIINCLH  144
            L +   ++ T + L+      GYALA      +  RFGRR V +I      +  ++    
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  145  PPYPVLVVSFIFAGFGNGLADSGWNAWIGNMADANQ---VLGLLHGFYGAGAVLAPLVAT  201
                +L+V  +  G G G       A I +     +    LGL+   +G GA L PL+  
Sbjct  83   SSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGG  142

Query  202  ALVTKAEVGWWYFYYIMIGCAVIELTTSVYCFWDDTGAVFRRDTQHSTGGTGSGGGSLRK  261
             L +      + +    +  A++ L  +V                              K
Sbjct  143  LLAS-----LFGWRAAFLILAILSLLAAVLLLLPRP--PPESKRPKPAEEARLSLIVAWK  195

Query  262  ALFTKHAGRITWLCAVFLLLYVGVEVALGGWIVTFMMRVRHGEPFASGMAATGFWLGITV  321
            AL       +     +F   + G+   L          V       +G+      L   +
Sbjct  196  ALLRDPVLWLLLALLLFGFAFFGLLTYL-----PLYQEVLGLSALLAGLLLGLGGLLGAI  250

Query  322  GRVVLGFVTPRLGEKLAISIYLISSIALGLILWLVP---NFYVSTVAVSLQGFFLGPLFP  378
            GR++LG ++ RLG +  + + L+  I   L L L+    +     +A+ L GF  G +FP
Sbjct  251  GRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFP  310

Query  379  AVVVVATKLLPRGLHVT  395
            A+  + + L P+    T
Sbjct  311  ALNALVSDLAPKEERGT  327



Lambda      K        H        a         alpha
   0.325    0.139    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 558268256


Query= TCONS_00029620

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            59.0    9e-11


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 59.0 bits (143),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 39/159 (25%), Positives = 63/159 (40%), Gaps = 6/159 (4%)

Query  69   TFWCFLVMGANDAAYGPLIP-YLEQHYSLTYTIVSLVFLSPLGGYALAALTNNHIHLRFG  127
             F    +     +  GP +P  L +   ++ T + L+      GYALA      +  RFG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  128  RRGVAIIAPSCHVISYIINCLHPPYPVLVVSFIFAGFGNGLADSGWNAWIGNMADANQ--  185
            RR V +I      +  ++        +L+V  +  G G G       A I +     +  
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  186  -VLGLLHGFYGAGAVLAPLVATALVTKAEVGWWYFYYIM  223
              LGL+   +G GA L PL+   L +    GW   + I+
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLAS--LFGWRAAFLIL  157



Lambda      K        H        a         alpha
   0.323    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00029621

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            74.4    4e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 74.4 bits (183),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 71/339 (21%), Positives = 123/339 (36%), Gaps = 19/339 (6%)

Query  69   TFWCFLVMGANDAAYGPLIP-YLEQHYSLTYTIVSLVFLSPLGGYALAALTNNHIHLRFG  127
             F    +     +  GP +P  L +   ++ T + L+      GYALA      +  RFG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  128  RRGVAIIAPSCHVISYIINCLHPPYPVLVVSFIFAGFGNGLADSGWNAWIGNMADANQ--  185
            RR V +I      +  ++        +L+V  +  G G G       A I +     +  
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  186  -VLGLLHGFYGAGAVLAPLVATALVTKAEVGWWYFYYIMIGCAVIELTTSVYCFWDDTGA  244
              LGL+   +G GA L PL+   L +      + +    +  A++ L  +V         
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLAS-----LFGWRAAFLILAILSLLAAVLLLLPRP--  173

Query  245  VFRRDTQHSTGGTGSGGGSLRKALFTKHAGRITWLCAVFLLLYVGVEVALGGWIVTFMMR  304
                                 KAL       +     +F   + G+   L          
Sbjct  174  PPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYL-----PLYQE  228

Query  305  VRHGEPFASGMAATGFWLGITVGRVVLGFVTPRLGEKLAISIYLISSIALGLILWLVP--  362
            V       +G+      L   +GR++LG ++ RLG +  + + L+  I   L L L+   
Sbjct  229  VLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLT  288

Query  363  -NFYVSTVAVSLQGFFLGPLFPAVVVVATKLLPRGLHVT  400
             +     +A+ L GF  G +FPA+  + + L P+    T
Sbjct  289  LSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGT  327



Lambda      K        H        a         alpha
   0.325    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0774    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00029622

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            74.4    4e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 74.4 bits (183),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 71/339 (21%), Positives = 123/339 (36%), Gaps = 19/339 (6%)

Query  69   TFWCFLVMGANDAAYGPLIP-YLEQHYSLTYTIVSLVFLSPLGGYALAALTNNHIHLRFG  127
             F    +     +  GP +P  L +   ++ T + L+      GYALA      +  RFG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  128  RRGVAIIAPSCHVISYIINCLHPPYPVLVVSFIFAGFGNGLADSGWNAWIGNMADANQ--  185
            RR V +I      +  ++        +L+V  +  G G G       A I +     +  
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  186  -VLGLLHGFYGAGAVLAPLVATALVTKAEVGWWYFYYIMIGCAVIELTTSVYCFWDDTGA  244
              LGL+   +G GA L PL+   L +      + +    +  A++ L  +V         
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLAS-----LFGWRAAFLILAILSLLAAVLLLLPRP--  173

Query  245  VFRRDTQHSTGGTGSGGGSLRKALFTKHAGRITWLCAVFLLLYVGVEVALGGWIVTFMMR  304
                                 KAL       +     +F   + G+   L          
Sbjct  174  PPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYL-----PLYQE  228

Query  305  VRHGEPFASGMAATGFWLGITVGRVVLGFVTPRLGEKLAISIYLISSIALGLILWLVP--  362
            V       +G+      L   +GR++LG ++ RLG +  + + L+  I   L L L+   
Sbjct  229  VLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLT  288

Query  363  -NFYVSTVAVSLQGFFLGPLFPAVVVVATKLLPRGLHVT  400
             +     +A+ L GF  G +FPA+  + + L P+    T
Sbjct  289  LSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEERGT  327



Lambda      K        H        a         alpha
   0.325    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00029624

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00029625

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00034499

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00029626

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00034500

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00029627

Length=103
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431224 pfam10346, Con-6, Conidiation protein 6. Con-6 is the ...  58.5    5e-14


>CDD:431224 pfam10346, Con-6, Conidiation protein 6.  Con-6 is the conserved 
N-terminal region of a family of small proteins found in 
fungi. It is expressed at approximately 6 hours after the induction 
of development and is induced just prior to major constriction-chain 
growth.
Length=33

 Score = 58.5 bits (143),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 19/30 (63%), Positives = 26/30 (87%), Gaps = 0/30 (0%)

Query  17  PENVMRGYKATLHNPNVSQQAKQHAQQELD  46
           P NV  GYKA LHNPNVS++AK+HA+++L+
Sbjct  1   PGNVAGGYKAALHNPNVSEEAKEHAREKLE  30



Lambda      K        H        a         alpha
   0.305    0.121    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00034501

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432289 pfam12051, DUF3533, Protein of unknown function (DUF35...  216     7e-69


>CDD:432289 pfam12051, DUF3533, Protein of unknown function (DUF3533).  This 
family of transmembrane proteins is functionally uncharacterized. 
This protein is found in bacteria and eukaryotes. 
Proteins in this family are typically between 393 to 772 amino 
acids in length.
Length=381

 Score = 216 bits (552),  Expect = 7e-69, Method: Composition-based stats.
 Identities = 79/204 (39%), Positives = 110/204 (54%), Gaps = 23/204 (11%)

Query  2    DISRVPQAVN---PAIGFYKVDLRPFGPAAATPSVTIGLIYLIIIAFFNTPFLMPVHMQF  58
            + S+     N     + F  +D+RPF        + +GLIYLII+ FF   FL P+H Q 
Sbjct  171  NPSQAALLANLLASPLAFNSIDIRPFTDGVLLAPLQVGLIYLIILTFFQFMFLGPLHAQM  230

Query  59   IKGDHPPLKNAQWLIWRLCSSILAYFFLSLFYSFVSLAFQIPFAHSPAPDTLPADDPNAY  118
                   LK    L++R+ +S ++YFFLSLF+S VSLAFQ+ F               A+
Sbjct  231  G---SRKLKFRHLLVYRILASGISYFFLSLFFSTVSLAFQVDF-------------TVAF  274

Query  119  GHGSFVVFWMLNWVGMTALGLPCENMGMIL---GFPYSALFLIFWVITNVATGFYALDLA  175
            G   FVV+WM  W+ M A+G   EN+  IL   G PY   +L+FW+I NV+  F+ L+L+
Sbjct  275  GRAGFVVYWMFTWLVMAAVGGANENVASILIAYGPPYLPFWLLFWIILNVSPTFFPLELS  334

Query  176  PGFFAWGYAFPLHRSKSSILRTAL  199
            PGF+ +GYA PLH     I R   
Sbjct  335  PGFYRYGYAMPLHNI-VEIYRVIF  357



Lambda      K        H        a         alpha
   0.331    0.143    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00029628

Length=383


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00034502

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  79.4    3e-19


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 79.4 bits (197),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 44/69 (64%), Gaps = 6/69 (9%)

Query  161  DHYAVLGLSKYRWRATPEQIKRAHRKKVLRHHPDKKAALGDRDENDNFFKCIQKAHELLT  220
            D+Y +LG+S     A+ E+IK+A+RK  L++HPDK        E +  FK I +A+E+L+
Sbjct  1    DYYEILGVSP---DASDEEIKKAYRKLALKYHPDKNP---GDPEAEEKFKEINEAYEVLS  54

Query  221  DPVKRRQFD  229
            DP KR  +D
Sbjct  55   DPEKRAIYD  63



Lambda      K        H        a         alpha
   0.318    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00034503

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  76.0    2e-18


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 76.0 bits (188),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 44/69 (64%), Gaps = 6/69 (9%)

Query  100  DHYAVLGLSKYRWRATPEQIKRAHRKKVLRHHPDKKAALGDRDENDNFFKCIQKAHELLT  159
            D+Y +LG+S     A+ E+IK+A+RK  L++HPDK        E +  FK I +A+E+L+
Sbjct  1    DYYEILGVSP---DASDEEIKKAYRKLALKYHPDKNP---GDPEAEEKFKEINEAYEVLS  54

Query  160  DPVKRRQFD  168
            DP KR  +D
Sbjct  55   DPEKRAIYD  63



Lambda      K        H        a         alpha
   0.315    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00029629

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435537 pfam16717, RAC_head, Ribosome-associated complex head ...  90.4    8e-23
CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  75.2    8e-18


>CDD:435537 pfam16717, RAC_head, Ribosome-associated complex head domain. 
 The RAC head domain is involved in ribosome binding.
Length=87

 Score = 90.4 bits (225),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 51/82 (62%), Positives = 59/82 (72%), Gaps = 1/82 (1%)

Query  357  KKNKRILKGSVKDVNYFAESGEPSPAQVDSVLTDVDSIIAKIDSEELAALAERLTTAGKD  416
            KKNKR+L+GSVKD NYFA+      A +D VL DVD +  K+D EELA LAE+L    KD
Sbjct  7    KKNKRVLRGSVKDANYFADGEAEKAAVIDGVLADVDLLCEKLDDEELAELAEKL-EGAKD  65

Query  417  AAAVKGVWTEEVKRLVDAGKLK  438
            A AVK V+ EEVK LVDAGKLK
Sbjct  66   AEAVKAVFEEEVKELVDAGKLK  87


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 75.2 bits (186),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 44/69 (64%), Gaps = 6/69 (9%)

Query  100  DHYAVLGLSKYRWRATPEQIKRAHRKKVLRHHPDKKAALGDRDENDNFFKCIQKAHELLT  159
            D+Y +LG+S     A+ E+IK+A+RK  L++HPDK        E +  FK I +A+E+L+
Sbjct  1    DYYEILGVSP---DASDEEIKKAYRKLALKYHPDKNP---GDPEAEEKFKEINEAYEVLS  54

Query  160  DPVKRRQFD  168
            DP KR  +D
Sbjct  55   DPEKRAIYD  63



Lambda      K        H        a         alpha
   0.312    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00029631

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435537 pfam16717, RAC_head, Ribosome-associated complex head ...  92.3    1e-23
CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  76.7    2e-18


>CDD:435537 pfam16717, RAC_head, Ribosome-associated complex head domain. 
 The RAC head domain is involved in ribosome binding.
Length=87

 Score = 92.3 bits (230),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 51/82 (62%), Positives = 59/82 (72%), Gaps = 1/82 (1%)

Query  334  KKNKRILKGSVKDVNYFAESGEPSPAQVDSVLTDVDSIIAKIDSEELAALAERLTTAGKD  393
            KKNKR+L+GSVKD NYFA+      A +D VL DVD +  K+D EELA LAE+L    KD
Sbjct  7    KKNKRVLRGSVKDANYFADGEAEKAAVIDGVLADVDLLCEKLDDEELAELAEKL-EGAKD  65

Query  394  AAAVKGVWTEEVKRLVDAGKLK  415
            A AVK V+ EEVK LVDAGKLK
Sbjct  66   AEAVKAVFEEEVKELVDAGKLK  87


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 76.7 bits (190),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 44/69 (64%), Gaps = 6/69 (9%)

Query  100  DHYAVLGLSKYRWRATPEQIKRAHRKKVLRHHPDKKAALGDRDENDNFFKCIQKAHELLT  159
            D+Y +LG+S     A+ E+IK+A+RK  L++HPDK        E +  FK I +A+E+L+
Sbjct  1    DYYEILGVSP---DASDEEIKKAYRKLALKYHPDKNP---GDPEAEEKFKEINEAYEVLS  54

Query  160  DPVKRRQFD  168
            DP KR  +D
Sbjct  55   DPEKRAIYD  63



Lambda      K        H        a         alpha
   0.313    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00034504

Length=355
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435537 pfam16717, RAC_head, Ribosome-associated complex head ...  87.7    3e-22
CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  73.3    3e-17


>CDD:435537 pfam16717, RAC_head, Ribosome-associated complex head domain. 
 The RAC head domain is involved in ribosome binding.
Length=87

 Score = 87.7 bits (218),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 51/82 (62%), Positives = 59/82 (72%), Gaps = 1/82 (1%)

Query  266  KKNKRILKGSVKDVNYFAESGEPSPAQVDSVLTDVDSIIAKIDSEELAALAERLTTAGKD  325
            KKNKR+L+GSVKD NYFA+      A +D VL DVD +  K+D EELA LAE+L    KD
Sbjct  7    KKNKRVLRGSVKDANYFADGEAEKAAVIDGVLADVDLLCEKLDDEELAELAEKL-EGAKD  65

Query  326  AAAVKGVWTEEVKRLVDAGKLK  347
            A AVK V+ EEVK LVDAGKLK
Sbjct  66   AEAVKAVFEEEVKELVDAGKLK  87


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 73.3 bits (181),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 44/69 (64%), Gaps = 6/69 (9%)

Query  9   DHYAVLGLSKYRWRATPEQIKRAHRKKVLRHHPDKKAALGDRDENDNFFKCIQKAHELLT  68
           D+Y +LG+S     A+ E+IK+A+RK  L++HPDK        E +  FK I +A+E+L+
Sbjct  1   DYYEILGVSP---DASDEEIKKAYRKLALKYHPDKNP---GDPEAEEKFKEINEAYEVLS  54

Query  69  DPVKRRQFD  77
           DP KR  +D
Sbjct  55  DPEKRAIYD  63



Lambda      K        H        a         alpha
   0.312    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00029632

Length=359
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435537 pfam16717, RAC_head, Ribosome-associated complex head ...  86.9    6e-22
CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  72.9    4e-17


>CDD:435537 pfam16717, RAC_head, Ribosome-associated complex head domain. 
 The RAC head domain is involved in ribosome binding.
Length=87

 Score = 86.9 bits (216),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 51/82 (62%), Positives = 59/82 (72%), Gaps = 1/82 (1%)

Query  270  KKNKRILKGSVKDVNYFAESGEPSPAQVDSVLTDVDSIIAKIDSEELAALAERLTTAGKD  329
            KKNKR+L+GSVKD NYFA+      A +D VL DVD +  K+D EELA LAE+L    KD
Sbjct  7    KKNKRVLRGSVKDANYFADGEAEKAAVIDGVLADVDLLCEKLDDEELAELAEKL-EGAKD  65

Query  330  AAAVKGVWTEEVKRLVDAGKLK  351
            A AVK V+ EEVK LVDAGKLK
Sbjct  66   AEAVKAVFEEEVKELVDAGKLK  87


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 72.9 bits (180),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 44/69 (64%), Gaps = 6/69 (9%)

Query  13  DHYAVLGLSKYRWRATPEQIKRAHRKKVLRHHPDKKAALGDRDENDNFFKCIQKAHELLT  72
           D+Y +LG+S     A+ E+IK+A+RK  L++HPDK        E +  FK I +A+E+L+
Sbjct  1   DYYEILGVSP---DASDEEIKKAYRKLALKYHPDKNP---GDPEAEEKFKEINEAYEVLS  54

Query  73  DPVKRRQFD  81
           DP KR  +D
Sbjct  55  DPEKRAIYD  63



Lambda      K        H        a         alpha
   0.312    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00029634

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family. Th...  135     6e-37


>CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family.  This family 
includes both bacterial phospholipase C enzymes EC:3.1.4.3, 
but also eukaryotic acid phosphatases EC:3.1.3.2.
Length=348

 Score = 135 bits (342),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 69/250 (28%), Positives = 104/250 (42%), Gaps = 41/250 (16%)

Query  77   ALAKKGLLLTN-FWAVTHPSEPNY----CAAAGGDTFG---MDNDNFNQV-PANVSTIAD  127
             LA++  L    F +V  P++PN        +   + G   + + N   V      TI D
Sbjct  112  LLAQEFTLCDRYFCSVPGPTQPNRLYLVSGTSDPGSHGGPSLVDPNTTPVKGFPWPTIPD  171

Query  128  LFDTKNIAWGEYQEHLPYPGYQGFRYPESGPNDYVRKHNPAILFDSVTQDATRLRQIKNF  187
                  I+WG YQE      +Q F       N YVRKHNP   F               F
Sbjct  172  RLSQAGISWGIYQEAFLDNHHQPF-------NYYVRKHNPLPSFRDALHQYGLAPH--YF  222

Query  188  TSFYDDLKNHRLPQHMFITPNMTNDAHDT-NITFAATWSWNFLSELLENDYFTKDTLILL  246
            + F  D+KN +LPQ  ++ PN  ND H   +I     W  N L  LL +      TL+++
Sbjct  223  SDFKKDVKNGKLPQVSWVIPNGANDEHPGHDIAAGQKWIKNVLEALLSSPQ-WNKTLLIV  281

Query  247  TFDENGTY------------------KLGNKIYSILLGGAVPKHLIGKEDNTYYNHYSVI  288
            T+DENG +                   LGN++ ++++         G  D+T ++H SV+
Sbjct  282  TYDENGGFYDHVPPPKAPVPGIPGPYGLGNRVPTLVISPWAKP---GTVDHTTFDHTSVL  338

Query  289  ASLSANWGLP  298
              +   +GLP
Sbjct  339  RFIEKRFGLP  348



Lambda      K        H        a         alpha
   0.316    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00034505

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family. Th...  133     1e-36


>CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family.  This family 
includes both bacterial phospholipase C enzymes EC:3.1.4.3, 
but also eukaryotic acid phosphatases EC:3.1.3.2.
Length=348

 Score = 133 bits (336),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 103/250 (41%), Gaps = 41/250 (16%)

Query  3    ALAKKGLLLTN-FWAVTHPSEPNY----CAAAGGDTFG----MDNDNFNQVPANVSTIAD  53
             LA++  L    F +V  P++PN        +   + G    +D +          TI D
Sbjct  112  LLAQEFTLCDRYFCSVPGPTQPNRLYLVSGTSDPGSHGGPSLVDPNTTPVKGFPWPTIPD  171

Query  54   LFDTKNIAWGEYQEHLPYPGYQGFRYPESGPNDYVRKHNPAILFDSVTQDATRLRQIKNF  113
                  I+WG YQE      +Q F       N YVRKHNP   F               F
Sbjct  172  RLSQAGISWGIYQEAFLDNHHQPF-------NYYVRKHNPLPSFRDALHQYGLAPH--YF  222

Query  114  TSFYDDLKNHRLPQHMFITPNMTNDAHDT-NITFAATWSWNFLSELLENDYFTKDTLILL  172
            + F  D+KN +LPQ  ++ PN  ND H   +I     W  N L  LL +      TL+++
Sbjct  223  SDFKKDVKNGKLPQVSWVIPNGANDEHPGHDIAAGQKWIKNVLEALLSSPQ-WNKTLLIV  281

Query  173  TFDENGTY------------------KLGNKIYSILLGGAVPKHLIGKEDNTYYNHYSVI  214
            T+DENG +                   LGN++ ++++         G  D+T ++H SV+
Sbjct  282  TYDENGGFYDHVPPPKAPVPGIPGPYGLGNRVPTLVISPWAKP---GTVDHTTFDHTSVL  338

Query  215  ASLSANWGLP  224
              +   +GLP
Sbjct  339  RFIEKRFGLP  348



Lambda      K        H        a         alpha
   0.316    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00034506

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family. Th...  135     6e-37


>CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family.  This family 
includes both bacterial phospholipase C enzymes EC:3.1.4.3, 
but also eukaryotic acid phosphatases EC:3.1.3.2.
Length=348

 Score = 135 bits (342),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 69/250 (28%), Positives = 104/250 (42%), Gaps = 41/250 (16%)

Query  77   ALAKKGLLLTN-FWAVTHPSEPNY----CAAAGGDTFG---MDNDNFNQV-PANVSTIAD  127
             LA++  L    F +V  P++PN        +   + G   + + N   V      TI D
Sbjct  112  LLAQEFTLCDRYFCSVPGPTQPNRLYLVSGTSDPGSHGGPSLVDPNTTPVKGFPWPTIPD  171

Query  128  LFDTKNIAWGEYQEHLPYPGYQGFRYPESGPNDYVRKHNPAILFDSVTQDATRLRQIKNF  187
                  I+WG YQE      +Q F       N YVRKHNP   F               F
Sbjct  172  RLSQAGISWGIYQEAFLDNHHQPF-------NYYVRKHNPLPSFRDALHQYGLAPH--YF  222

Query  188  TSFYDDLKNHRLPQHMFITPNMTNDAHDT-NITFAATWSWNFLSELLENDYFTKDTLILL  246
            + F  D+KN +LPQ  ++ PN  ND H   +I     W  N L  LL +      TL+++
Sbjct  223  SDFKKDVKNGKLPQVSWVIPNGANDEHPGHDIAAGQKWIKNVLEALLSSPQ-WNKTLLIV  281

Query  247  TFDENGTY------------------KLGNKIYSILLGGAVPKHLIGKEDNTYYNHYSVI  288
            T+DENG +                   LGN++ ++++         G  D+T ++H SV+
Sbjct  282  TYDENGGFYDHVPPPKAPVPGIPGPYGLGNRVPTLVISPWAKP---GTVDHTTFDHTSVL  338

Query  289  ASLSANWGLP  298
              +   +GLP
Sbjct  339  RFIEKRFGLP  348



Lambda      K        H        a         alpha
   0.316    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00029635

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family. Th...  135     6e-37


>CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family.  This family 
includes both bacterial phospholipase C enzymes EC:3.1.4.3, 
but also eukaryotic acid phosphatases EC:3.1.3.2.
Length=348

 Score = 135 bits (342),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 69/250 (28%), Positives = 104/250 (42%), Gaps = 41/250 (16%)

Query  77   ALAKKGLLLTN-FWAVTHPSEPNY----CAAAGGDTFG---MDNDNFNQV-PANVSTIAD  127
             LA++  L    F +V  P++PN        +   + G   + + N   V      TI D
Sbjct  112  LLAQEFTLCDRYFCSVPGPTQPNRLYLVSGTSDPGSHGGPSLVDPNTTPVKGFPWPTIPD  171

Query  128  LFDTKNIAWGEYQEHLPYPGYQGFRYPESGPNDYVRKHNPAILFDSVTQDATRLRQIKNF  187
                  I+WG YQE      +Q F       N YVRKHNP   F               F
Sbjct  172  RLSQAGISWGIYQEAFLDNHHQPF-------NYYVRKHNPLPSFRDALHQYGLAPH--YF  222

Query  188  TSFYDDLKNHRLPQHMFITPNMTNDAHDT-NITFAATWSWNFLSELLENDYFTKDTLILL  246
            + F  D+KN +LPQ  ++ PN  ND H   +I     W  N L  LL +      TL+++
Sbjct  223  SDFKKDVKNGKLPQVSWVIPNGANDEHPGHDIAAGQKWIKNVLEALLSSPQ-WNKTLLIV  281

Query  247  TFDENGTY------------------KLGNKIYSILLGGAVPKHLIGKEDNTYYNHYSVI  288
            T+DENG +                   LGN++ ++++         G  D+T ++H SV+
Sbjct  282  TYDENGGFYDHVPPPKAPVPGIPGPYGLGNRVPTLVISPWAKP---GTVDHTTFDHTSVL  338

Query  289  ASLSANWGLP  298
              +   +GLP
Sbjct  339  RFIEKRFGLP  348



Lambda      K        H        a         alpha
   0.316    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00029636

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family. Th...  135     7e-37


>CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family.  This family 
includes both bacterial phospholipase C enzymes EC:3.1.4.3, 
but also eukaryotic acid phosphatases EC:3.1.3.2.
Length=348

 Score = 135 bits (342),  Expect = 7e-37, Method: Composition-based stats.
 Identities = 69/250 (28%), Positives = 104/250 (42%), Gaps = 41/250 (16%)

Query  77   ALAKKGLLLTN-FWAVTHPSEPNY----CAAAGGDTFG---MDNDNFNQV-PANVSTIAD  127
             LA++  L    F +V  P++PN        +   + G   + + N   V      TI D
Sbjct  112  LLAQEFTLCDRYFCSVPGPTQPNRLYLVSGTSDPGSHGGPSLVDPNTTPVKGFPWPTIPD  171

Query  128  LFDTKNIAWGEYQEHLPYPGYQGFRYPESGPNDYVRKHNPAILFDSVTQDATRLRQIKNF  187
                  I+WG YQE      +Q F       N YVRKHNP   F               F
Sbjct  172  RLSQAGISWGIYQEAFLDNHHQPF-------NYYVRKHNPLPSFRDALHQYGLAPH--YF  222

Query  188  TSFYDDLKNHRLPQHMFITPNMTNDAHDT-NITFAATWSWNFLSELLENDYFTKDTLILL  246
            + F  D+KN +LPQ  ++ PN  ND H   +I     W  N L  LL +      TL+++
Sbjct  223  SDFKKDVKNGKLPQVSWVIPNGANDEHPGHDIAAGQKWIKNVLEALLSSPQ-WNKTLLIV  281

Query  247  TFDENGTY------------------KLGNKIYSILLGGAVPKHLIGKEDNTYYNHYSVI  288
            T+DENG +                   LGN++ ++++         G  D+T ++H SV+
Sbjct  282  TYDENGGFYDHVPPPKAPVPGIPGPYGLGNRVPTLVISPWAKP---GTVDHTTFDHTSVL  338

Query  289  ASLSANWGLP  298
              +   +GLP
Sbjct  339  RFIEKRFGLP  348



Lambda      K        H        a         alpha
   0.316    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500176124


Query= TCONS_00029637

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family. Th...  135     6e-37


>CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family.  This family 
includes both bacterial phospholipase C enzymes EC:3.1.4.3, 
but also eukaryotic acid phosphatases EC:3.1.3.2.
Length=348

 Score = 135 bits (342),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 69/250 (28%), Positives = 104/250 (42%), Gaps = 41/250 (16%)

Query  77   ALAKKGLLLTN-FWAVTHPSEPNY----CAAAGGDTFG---MDNDNFNQV-PANVSTIAD  127
             LA++  L    F +V  P++PN        +   + G   + + N   V      TI D
Sbjct  112  LLAQEFTLCDRYFCSVPGPTQPNRLYLVSGTSDPGSHGGPSLVDPNTTPVKGFPWPTIPD  171

Query  128  LFDTKNIAWGEYQEHLPYPGYQGFRYPESGPNDYVRKHNPAILFDSVTQDATRLRQIKNF  187
                  I+WG YQE      +Q F       N YVRKHNP   F               F
Sbjct  172  RLSQAGISWGIYQEAFLDNHHQPF-------NYYVRKHNPLPSFRDALHQYGLAPH--YF  222

Query  188  TSFYDDLKNHRLPQHMFITPNMTNDAHDT-NITFAATWSWNFLSELLENDYFTKDTLILL  246
            + F  D+KN +LPQ  ++ PN  ND H   +I     W  N L  LL +      TL+++
Sbjct  223  SDFKKDVKNGKLPQVSWVIPNGANDEHPGHDIAAGQKWIKNVLEALLSSPQ-WNKTLLIV  281

Query  247  TFDENGTY------------------KLGNKIYSILLGGAVPKHLIGKEDNTYYNHYSVI  288
            T+DENG +                   LGN++ ++++         G  D+T ++H SV+
Sbjct  282  TYDENGGFYDHVPPPKAPVPGIPGPYGLGNRVPTLVISPWAKP---GTVDHTTFDHTSVL  338

Query  289  ASLSANWGLP  298
              +   +GLP
Sbjct  339  RFIEKRFGLP  348



Lambda      K        H        a         alpha
   0.316    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00034507

Length=413
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family. Th...  135     6e-37


>CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family.  This family 
includes both bacterial phospholipase C enzymes EC:3.1.4.3, 
but also eukaryotic acid phosphatases EC:3.1.3.2.
Length=348

 Score = 135 bits (342),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 69/250 (28%), Positives = 104/250 (42%), Gaps = 41/250 (16%)

Query  77   ALAKKGLLLTN-FWAVTHPSEPNY----CAAAGGDTFG---MDNDNFNQV-PANVSTIAD  127
             LA++  L    F +V  P++PN        +   + G   + + N   V      TI D
Sbjct  112  LLAQEFTLCDRYFCSVPGPTQPNRLYLVSGTSDPGSHGGPSLVDPNTTPVKGFPWPTIPD  171

Query  128  LFDTKNIAWGEYQEHLPYPGYQGFRYPESGPNDYVRKHNPAILFDSVTQDATRLRQIKNF  187
                  I+WG YQE      +Q F       N YVRKHNP   F               F
Sbjct  172  RLSQAGISWGIYQEAFLDNHHQPF-------NYYVRKHNPLPSFRDALHQYGLAPH--YF  222

Query  188  TSFYDDLKNHRLPQHMFITPNMTNDAHDT-NITFAATWSWNFLSELLENDYFTKDTLILL  246
            + F  D+KN +LPQ  ++ PN  ND H   +I     W  N L  LL +      TL+++
Sbjct  223  SDFKKDVKNGKLPQVSWVIPNGANDEHPGHDIAAGQKWIKNVLEALLSSPQ-WNKTLLIV  281

Query  247  TFDENGTY------------------KLGNKIYSILLGGAVPKHLIGKEDNTYYNHYSVI  288
            T+DENG +                   LGN++ ++++         G  D+T ++H SV+
Sbjct  282  TYDENGGFYDHVPPPKAPVPGIPGPYGLGNRVPTLVISPWAKP---GTVDHTTFDHTSVL  338

Query  289  ASLSANWGLP  298
              +   +GLP
Sbjct  339  RFIEKRFGLP  348



Lambda      K        H        a         alpha
   0.316    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00029638

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family. Th...  136     6e-37


>CDD:309350 pfam04185, Phosphoesterase, Phosphoesterase family.  This family 
includes both bacterial phospholipase C enzymes EC:3.1.4.3, 
but also eukaryotic acid phosphatases EC:3.1.3.2.
Length=348

 Score = 136 bits (343),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 69/250 (28%), Positives = 104/250 (42%), Gaps = 41/250 (16%)

Query  77   ALAKKGLLLTN-FWAVTHPSEPNY----CAAAGGDTFG---MDNDNFNQV-PANVSTIAD  127
             LA++  L    F +V  P++PN        +   + G   + + N   V      TI D
Sbjct  112  LLAQEFTLCDRYFCSVPGPTQPNRLYLVSGTSDPGSHGGPSLVDPNTTPVKGFPWPTIPD  171

Query  128  LFDTKNIAWGEYQEHLPYPGYQGFRYPESGPNDYVRKHNPAILFDSVTQDATRLRQIKNF  187
                  I+WG YQE      +Q F       N YVRKHNP   F               F
Sbjct  172  RLSQAGISWGIYQEAFLDNHHQPF-------NYYVRKHNPLPSFRDALHQYGLAPH--YF  222

Query  188  TSFYDDLKNHRLPQHMFITPNMTNDAHDT-NITFAATWSWNFLSELLENDYFTKDTLILL  246
            + F  D+KN +LPQ  ++ PN  ND H   +I     W  N L  LL +      TL+++
Sbjct  223  SDFKKDVKNGKLPQVSWVIPNGANDEHPGHDIAAGQKWIKNVLEALLSSPQ-WNKTLLIV  281

Query  247  TFDENGTY------------------KLGNKIYSILLGGAVPKHLIGKEDNTYYNHYSVI  288
            T+DENG +                   LGN++ ++++         G  D+T ++H SV+
Sbjct  282  TYDENGGFYDHVPPPKAPVPGIPGPYGLGNRVPTLVISPWAKP---GTVDHTTFDHTSVL  338

Query  289  ASLSANWGLP  298
              +   +GLP
Sbjct  339  RFIEKRFGLP  348



Lambda      K        H        a         alpha
   0.316    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00029639

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  156     3e-48
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  147     3e-45


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 156 bits (398),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 61/185 (33%), Positives = 98/185 (53%), Gaps = 12/185 (6%)

Query  39   NDSGIGLETTILMLREGASVLMTDISAAGLERAIAKVHEVVPQHDGRVEYRVVDVSKESE  98
            N+SGIG      +  EGA V++TD++ A  +R    V E+  +    V     DV+ E +
Sbjct  4    NESGIGWAIARALAEEGAEVVLTDLNEALAKR----VEELAEELGAAV--LPCDVTDEEQ  57

Query  99   VEAAVAHL-DAWGGLDVMFNNAGIMHPKDGDSEETPEEIWDLTMNINVKGVWYGSKHAVK  157
            VEA VA   + +G LD++ NNAG      G   +T  E +D  +++N+  ++  +K A+ 
Sbjct  58   VEALVAAAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALP  117

Query  158  SLRRHGKKKGSIINTASMVALVGAATPQLAYTASKGAVLAMTRELAIVHAREGFRFNSLC  217
             +    K+ GSI+N +S+ A         AY A+K A+ A+TR LA+     G R N++ 
Sbjct  118  LM----KEGGSIVNLSSIGAERVVPNYN-AYGAAKAALEALTRYLAVELGPRGIRVNAIS  172

Query  218  PAPLK  222
            P P+K
Sbjct  173  PGPIK  177


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 147 bits (374),  Expect = 3e-45, Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 101/216 (47%), Gaps = 34/216 (16%)

Query  8    KNAIVTGAAGYVYHVPELCLVDQGQREQLTRNDSGIGLETTILMLREGASVLMTDISAAG  67
            K A+VTGA+                        SGIG      + +EGA V++ D S   
Sbjct  1    KVALVTGAS------------------------SGIGRAIAKRLAKEGAKVVLVDRSEEK  36

Query  68   LERAIAKVHEVVPQHDGRVEYRVVDVSKESEVEAAVAH-LDAWGGLDVMFNNAGIMHPKD  126
            LE    ++        G+  +   DV+  ++V+A V   ++  G LD++ NNAGI     
Sbjct  37   LEAVAKELGA----LGGKALFIQGDVTDRAQVKALVEQAVERLGRLDILVNNAGITGL--  90

Query  127  GDSEETPEEIWDLTMNINVKGVWYGSKHAVKSLRRHGKKKGSIINTASMVALVGAATPQL  186
            G   E  +E W+  +++N+ GV+  ++  + ++ +     G I+N +S+  LV       
Sbjct  91   GPFSELSDEDWERVIDVNLTGVFNLTRAVLPAMIK--GSGGRIVNISSVAGLVPYPG-GS  147

Query  187  AYTASKGAVLAMTRELAIVHAREGFRFNSLCPAPLK  222
            AY+ASK AV+  TR LA+  A  G R N++ P  + 
Sbjct  148  AYSASKAAVIGFTRSLALELAPHGIRVNAVAPGGVD  183



Lambda      K        H        a         alpha
   0.318    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00034508

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  156     3e-48
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  147     3e-45


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 156 bits (398),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 61/185 (33%), Positives = 98/185 (53%), Gaps = 12/185 (6%)

Query  39   NDSGIGLETTILMLREGASVLMTDISAAGLERAIAKVHEVVPQHDGRVEYRVVDVSKESE  98
            N+SGIG      +  EGA V++TD++ A  +R    V E+  +    V     DV+ E +
Sbjct  4    NESGIGWAIARALAEEGAEVVLTDLNEALAKR----VEELAEELGAAV--LPCDVTDEEQ  57

Query  99   VEAAVAHL-DAWGGLDVMFNNAGIMHPKDGDSEETPEEIWDLTMNINVKGVWYGSKHAVK  157
            VEA VA   + +G LD++ NNAG      G   +T  E +D  +++N+  ++  +K A+ 
Sbjct  58   VEALVAAAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALP  117

Query  158  SLRRHGKKKGSIINTASMVALVGAATPQLAYTASKGAVLAMTRELAIVHAREGFRFNSLC  217
             +    K+ GSI+N +S+ A         AY A+K A+ A+TR LA+     G R N++ 
Sbjct  118  LM----KEGGSIVNLSSIGAERVVPNYN-AYGAAKAALEALTRYLAVELGPRGIRVNAIS  172

Query  218  PAPLK  222
            P P+K
Sbjct  173  PGPIK  177


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 147 bits (374),  Expect = 3e-45, Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 101/216 (47%), Gaps = 34/216 (16%)

Query  8    KNAIVTGAAGYVYHVPELCLVDQGQREQLTRNDSGIGLETTILMLREGASVLMTDISAAG  67
            K A+VTGA+                        SGIG      + +EGA V++ D S   
Sbjct  1    KVALVTGAS------------------------SGIGRAIAKRLAKEGAKVVLVDRSEEK  36

Query  68   LERAIAKVHEVVPQHDGRVEYRVVDVSKESEVEAAVAH-LDAWGGLDVMFNNAGIMHPKD  126
            LE    ++        G+  +   DV+  ++V+A V   ++  G LD++ NNAGI     
Sbjct  37   LEAVAKELGA----LGGKALFIQGDVTDRAQVKALVEQAVERLGRLDILVNNAGITGL--  90

Query  127  GDSEETPEEIWDLTMNINVKGVWYGSKHAVKSLRRHGKKKGSIINTASMVALVGAATPQL  186
            G   E  +E W+  +++N+ GV+  ++  + ++ +     G I+N +S+  LV       
Sbjct  91   GPFSELSDEDWERVIDVNLTGVFNLTRAVLPAMIK--GSGGRIVNISSVAGLVPYPG-GS  147

Query  187  AYTASKGAVLAMTRELAIVHAREGFRFNSLCPAPLK  222
            AY+ASK AV+  TR LA+  A  G R N++ P  + 
Sbjct  148  AYSASKAAVIGFTRSLALELAPHGIRVNAVAPGGVD  183



Lambda      K        H        a         alpha
   0.318    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00029640

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00034509

Length=244
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425473 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic...  245     3e-81


>CDD:425473 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain. 
 
Length=343

 Score = 245 bits (628),  Expect = 3e-81, Method: Composition-based stats.
 Identities = 98/246 (40%), Positives = 139/246 (57%), Gaps = 20/246 (8%)

Query  1    MADRVSLFKLLAKSIGVEHGITPCFMAKPMYGQPGSSGHIHISLCDLEGKNLFARDTPDP  60
             AD    FK + K++  +HG+T  FM KP +G  GS  H+H SL   +GKNLFA    DP
Sbjct  112  AADNAQTFKYVVKNVARKHGLTATFMPKPFFGDNGSGMHVHQSLW-KDGKNLFA----DP  166

Query  61   NALWSDAACLSDMGRQFLAGLLEALPDIMPLFAPTINSYKRLVENYWAPVNISWGLEDRM  120
            +        LS+  R F+AG+L+  P +  L  PT+NSYKRLV  Y APV ++WG  +R 
Sbjct  167  D----GEYGLSETARHFIAGILKHAPALTALTNPTVNSYKRLVPGYEAPVYLAWGARNRS  222

Query  121  ASIRIITPPVCKPGATRMEVRIPGADLHPHYALSVILAAGWRGIEKKLDIKVPPMS----  176
            A++RI       P A R+EVR P  D +P+ A + +LAAG  GIE K+D    P+     
Sbjct  223  AALRIPAGS---PKARRVEVRSPDPDANPYLAFAALLAAGLDGIENKIDPG-EPVDGNLY  278

Query  177  ALKQGERPEL--LPNTLEEAIKRFSAPESIAREILDGEFVDFFTATRQHELKVWREAVTD  234
             L   ER  +  LP++LEEA+      E + +E L   F++ + A ++ E + +R AV  
Sbjct  279  ELTPEERKGIPTLPSSLEEALDALEEDE-LLKEALGEHFIEAYIAVKRAEWEEFRTAVHP  337

Query  235  WEFKRY  240
            WEF+RY
Sbjct  338  WEFERY  343



Lambda      K        H        a         alpha
   0.321    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00034510

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425473 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic...  284     2e-93


>CDD:425473 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain. 
 
Length=343

 Score = 284 bits (730),  Expect = 2e-93, Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 185/367 (50%), Gaps = 31/367 (8%)

Query  116  ADGRSMLRAITDKLAEANCQAMAGVELEFMNFQTPSQDGYSNGSQTRDIAAFLERNAPSA  175
             D RS+L+    +LA     A  G ELEF  F    +DG  NG        F   ++   
Sbjct  1    RDPRSILKRALARLASLGLTAYVGPELEFFLFDRV-EDGNPNGP-------FYPPDSEGG  52

Query  176  LRPMTAGSFSYSATRPV-AFKKYFWDIFNTSARFNCGIEGWHTEGGPGVYEAALKVCNVA  234
             RP   G   Y    PV + +    +I +        +E  H E  PG +E   +  +  
Sbjct  53   YRPADKGG--YFDVAPVDSAQDLRREIVDALEAMGIEVEASHHEVAPGQHEIDFRFDDAL  110

Query  235  EMADRVSLFKLLAKSIGVEHGITPCFMAKPMYGQPGSSGHIHISLCDLEGKNLFARDTPD  294
            + AD    FK + K++  +HG+T  FM KP +G  GS  H+H SL   +GKNLFA    D
Sbjct  111  KAADNAQTFKYVVKNVARKHGLTATFMPKPFFGDNGSGMHVHQSLW-KDGKNLFA----D  165

Query  295  PNALWSDAACLSDMGRQFLAGLLEALPDIMPLFAPTINSYKRLVENYWAPVNISWGLEDR  354
            P+        LS+  R F+AG+L+  P +  L  PT+NSYKRLV  Y APV ++WG  +R
Sbjct  166  PD----GEYGLSETARHFIAGILKHAPALTALTNPTVNSYKRLVPGYEAPVYLAWGARNR  221

Query  355  MASIRIITPPVCKPGATRMEVRIPGADLHPHYALSVILAAGWRGIEKKLDIKVPPMS---  411
             A++RI       P A R+EVR P  D +P+ A + +LAAG  GIE K+D    P+    
Sbjct  222  SAALRIPAGS---PKARRVEVRSPDPDANPYLAFAALLAAGLDGIENKIDPG-EPVDGNL  277

Query  412  -ALKQGERPEL--LPNTLEEAIKRFSAPESIAREILDGEFVDFFTATRQHELKVWREAVT  468
              L   ER  +  LP++LEEA+      E + +E L   F++ + A ++ E + +R AV 
Sbjct  278  YELTPEERKGIPTLPSSLEEALDALEEDE-LLKEALGEHFIEAYIAVKRAEWEEFRTAVH  336

Query  469  DWEFKRY  475
             WEF+RY
Sbjct  337  PWEFERY  343



Lambda      K        H        a         alpha
   0.321    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00029642

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433659 pfam14031, D-ser_dehydrat, Putative serine dehydratase...  107     1e-29
CDD:460095 pfam01168, Ala_racemase_N, Alanine racemase, N-termina...  60.7    2e-11


>CDD:433659 pfam14031, D-ser_dehydrat, Putative serine dehydratase domain. 
 This domain is found at the C-terminus of yeast D-serine 
dehydratase. Structures have been solved for two bacterial members 
of this family. The yeast protein has been shown to be 
a zinc dependant enzyme.
Length=96

 Score = 107 bits (269),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 59/102 (58%), Gaps = 9/102 (9%)

Query  217  AVRVLVEVCSVYPERNEALINAGTVALTKE-TSDVVGFGRVTD--RPGWAVVRMAQEHGI  273
            A+ VL  V SV P R  AL++AG+ AL+++      G+G V D   PGW VVR++QEHGI
Sbjct  1    ALTVLATVVSVPPPRR-ALVDAGSKALSRDPGGGYPGYGEVVDGLPPGWGVVRLSQEHGI  59

Query  274  LGLANASGVQRVEETFRVGQKVMLYIQHACITAAQHHVYHVV  315
            L L +        +  +VG +V +   HAC T A H  Y+VV
Sbjct  60   LTLPDGGA-----DDLKVGDRVRIIPNHACPTVALHDWYYVV  96


>CDD:460095 pfam01168, Ala_racemase_N, Alanine racemase, N-terminal domain. 
 
Length=220

 Score = 60.7 bits (148),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 62/175 (35%), Gaps = 16/175 (9%)

Query  1    MMLGNGTHRRIVASTLCEIRGALPLAEEGILDEALYGIPIYPSALPQLAALSSKLKIVLM  60
              L  G       +TL E   AL L E GI    L      P  L   A    +  +   
Sbjct  41   RALLEGGADGFAVATLDE---ALELREAGITAPILVLGGFPPEELALAA----EYDLTPT  93

Query  61   VDNEAQIDALESFAQSTGRTAPWPVFIKVDVGSHRAGLESSSSAMRLLVEKVESSHAAEV  120
            VD+  Q++AL + A+  G+     V +K+D G  R G          L+ ++ +     +
Sbjct  94   VDSLEQLEALAAAARRLGKPLR--VHLKIDTGMGRLGF--RPEEALALLARLAALPGLRL  149

Query  121  YGFYCHAGHSYACRTEEAAAAVLKSELEGVVRAAGYLDRKEGRKVVVSFGSTPTA  175
             G   H   +     +E       ++L     AA  L+    R  VV   ++   
Sbjct  150  EGLMTHFACA-----DEPDDPYTNAQLARFREAAAALEAAGLRPPVVHLANSAAI  199



Lambda      K        H        a         alpha
   0.318    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00029643

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433659 pfam14031, D-ser_dehydrat, Putative serine dehydratase...  109     7e-30
CDD:460095 pfam01168, Ala_racemase_N, Alanine racemase, N-termina...  66.9    2e-13


>CDD:433659 pfam14031, D-ser_dehydrat, Putative serine dehydratase domain. 
 This domain is found at the C-terminus of yeast D-serine 
dehydratase. Structures have been solved for two bacterial members 
of this family. The yeast protein has been shown to be 
a zinc dependant enzyme.
Length=96

 Score = 109 bits (274),  Expect = 7e-30, Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 59/102 (58%), Gaps = 9/102 (9%)

Query  280  AVRVLVEVCSVYPERNEALINAGTVALTKE-TSDVVGFGRVTD--RPGWAVVRMAQEHGI  336
            A+ VL  V SV P R  AL++AG+ AL+++      G+G V D   PGW VVR++QEHGI
Sbjct  1    ALTVLATVVSVPPPRR-ALVDAGSKALSRDPGGGYPGYGEVVDGLPPGWGVVRLSQEHGI  59

Query  337  LGLANASGVQRVEETFRVGQKVMLYIQHACITAAQHHVYHVV  378
            L L +        +  +VG +V +   HAC T A H  Y+VV
Sbjct  60   LTLPDGGA-----DDLKVGDRVRIIPNHACPTVALHDWYYVV  96


>CDD:460095 pfam01168, Ala_racemase_N, Alanine racemase, N-terminal domain. 
 
Length=220

 Score = 66.9 bits (164),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 77/212 (36%), Gaps = 22/212 (10%)

Query  31   LERNIKQLLQDVKDLEISFRPHVKT----LKSIEVTRMMLGNGTHRRIVASTLCEIRGAL  86
            L  N+++L +            VK       ++EV R +L  G       +TL E   AL
Sbjct  6    LRHNLRRL-RRRAGPGAKLMAVVKANAYGHGAVEVARALLEGG-ADGFAVATLDE---AL  60

Query  87   PLAEEGILDEALYGIPIYPSALPQLAALSSKLKIVLMVDNEAQIDALESFAQSTGRTAPW  146
             L E GI    L      P  L   A    +  +   VD+  Q++AL + A+  G+    
Sbjct  61   ELREAGITAPILVLGGFPPEELALAA----EYDLTPTVDSLEQLEALAAAARRLGKPLR-  115

Query  147  PVFIKVDVGSHRAGLESSSSAMRLLVEKVESSHAAEVYGFYCHAGHSYACRTEEAAAAVL  206
             V +K+D G  R G          L+ ++ +     + G   H   +     +E      
Sbjct  116  -VHLKIDTGMGRLGF--RPEEALALLARLAALPGLRLEGLMTHFACA-----DEPDDPYT  167

Query  207  KSELEGVVRAAGYLDRKEGRKVVVSFGSTPTA  238
             ++L     AA  L+    R  VV   ++   
Sbjct  168  NAQLARFREAAAALEAAGLRPPVVHLANSAAI  199



Lambda      K        H        a         alpha
   0.319    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00029644

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00029645

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00029651

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00029647

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00034511

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00029648

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00029653

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00034512

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00029650

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00029649

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00029652

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00029654

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00029656

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00034514

Length=571


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 715831012


Query= TCONS_00034515

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00029655

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00029657

Length=581


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00029658

Length=581


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00034516

Length=409


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 497069440


Query= TCONS_00029660

Length=581


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00029659

Length=581


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00034517

Length=409


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 497069440


Query= TCONS_00029661

Length=581


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00029662

Length=581


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00029663

Length=309


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00029664

Length=581


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00034518

Length=309


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00029665

Length=279


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00029666

Length=208


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00034519

Length=353


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00029669

Length=467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            102     2e-24


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 102 bits (255),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 141/373 (38%), Gaps = 33/373 (9%)

Query  54   LAYCISLMDRTNLSMAAVAGMTKELGLHIGTRYSVIVLIFFVPYVIFQPIMTVITRKLGP  113
            LA  ++ + R+ L  A    + ++LG+       +++ +F + Y + QP+   ++ + G 
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLGISPTE-IGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  114  TFFLGAIVISWGAILIGMGFTKDWKQMTVCRALLGLLEAGYFPGCVYLLSSWYVRYDVQK  173
               L   ++ +   L+ + F      + V R L GL     FP  + L++ W+   +  +
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  174  RFSVFYLIGCVASALAGILAFGLSQMGGIQGLGGWRWIFIMEGVITGVIGVLTLLLLVDF  233
               +      + +AL  +L       G +  L GWR  F++  +++ +  VL L      
Sbjct  122  ALGLVSAGFGLGAALGPLLG------GLLASLFGWRAAFLILAILSLLAAVLLL-----L  170

Query  234  PDRAHKSWRFLSEKECAFVVRRINRDRSDADDEPFSLIRFLTPALDPKIWGFAMIFLCTT  293
            P    +S R    +E                    SLI      L   +    +  L   
Sbjct  171  PRPPPESKRPKPAEE-----------------ARLSLIVAWKALLRDPVLWLLLALLLFG  213

Query  294  TVTYAIAYFLPIILQQGMGYSVGASQCLVAPPFVFAGIVMFSSAWVGDKY--RVRGVLVA  351
               + +  +LP + Q+ +G S   +  L+    +   I       + D+   R R +L  
Sbjct  214  FAFFGLLTYLP-LYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLAL  272

Query  352  VNSILCLIGLPILGFHSNNAVRYFGVFLATAGANANIPAIMAYQANNVRGQWTRALSSAT  411
            +  IL  +GL +L    ++      + L   G     PA+ A  ++    +  R  +S  
Sbjct  273  LLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEE-RGTASGL  331

Query  412  LVGFGGIGGILSS  424
                G +GG L  
Sbjct  332  YNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.143    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 578206408


Query= TCONS_00034520

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00034522

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            75.9    9e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 75.9 bits (187),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 73/166 (44%), Gaps = 7/166 (4%)

Query  54   LAYCISLMDRTNLSMAAVAGMTKELGLHIGTRYSVIVLIFFVPYVIFQPIMTVITRKLGP  113
            LA  ++ + R+ L  A    + ++LG+       +++ +F + Y + QP+   ++ + G 
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLGISPTE-IGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  114  TFFLGAIVISWGAILIGMGFTKDWKQMTVCRALLGLLEAGYFPGCVYLLSSWYVRYDVQK  173
               L   ++ +   L+ + F      + V R L GL     FP  + L++ W+   +  +
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  174  RFSVFYLIGCVASALAGILAFGLSQMGGIQGLGGWRWIFIMEGVVS  219
               +      + +AL  +L       G +  L GWR  F++  ++S
Sbjct  122  ALGLVSAGFGLGAALGPLLG------GLLASLFGWRAAFLILAILS  161



Lambda      K        H        a         alpha
   0.327    0.143    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00034524

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00034523

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            75.9    9e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 75.9 bits (187),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 73/166 (44%), Gaps = 7/166 (4%)

Query  54   LAYCISLMDRTNLSMAAVAGMTKELGLHIGTRYSVIVLIFFVPYVIFQPIMTVITRKLGP  113
            LA  ++ + R+ L  A    + ++LG+       +++ +F + Y + QP+   ++ + G 
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLGISPTE-IGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  114  TFFLGAIVISWGAILIGMGFTKDWKQMTVCRALLGLLEAGYFPGCVYLLSSWYVRYDVQK  173
               L   ++ +   L+ + F      + V R L GL     FP  + L++ W+   +  +
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  174  RFSVFYLIGCVASALAGILAFGLSQMGGIQGLGGWRWIFIMEGVVS  219
               +      + +AL  +L       G +  L GWR  F++  ++S
Sbjct  122  ALGLVSAGFGLGAALGPLLG------GLLASLFGWRAAFLILAILS  161



Lambda      K        H        a         alpha
   0.327    0.143    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00034521

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            74.0    6e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 74.0 bits (182),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 128/374 (34%), Gaps = 46/374 (12%)

Query  54   LAYCISLMDRTNLSMAAVAGMTKELGLHIGTRYSVIVLIFFVPYVIFQPIMTVITRKLGP  113
            LA  ++ + R+ L  A    + ++LG+       +++ +F + Y + QP+   ++ + G 
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLGISPTE-IGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  114  TFFLGAIVISWGAILIVCFPVQVE------------GHQPNHKTGNGLHERLEANDYDVQ  161
               L   ++ +   L++                   G          L         +  
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADW-FPPEERG  120

Query  162  KRFSVFYLIGCVASALAGILAFGLSQMGGIQGLGGWRWIFIMEGVITGVIGVLTLLLLVD  221
            +   +      + +AL  +L       G +  L GWR  F++  +++ +  VL L     
Sbjct  121  RALGLVSAGFGLGAALGPLLG------GLLASLFGWRAAFLILAILSLLAAVLLL-----  169

Query  222  FPDRAHKSWRFLSEKECAFVVRRINRDRSDADDEPFSLIRFLTPALDPKIWGFAMIFLCT  281
             P    +S R    +E                    SLI      L   +    +  L  
Sbjct  170  LPRPPPESKRPKPAEE-----------------ARLSLIVAWKALLRDPVLWLLLALLLF  212

Query  282  TTVTYAIAYFLPIILQQGMGYSVGASQCLVAPPFVFAGIVMFSSAWVGDKY--RVRGVLV  339
                + +  +LP+  Q+ +G S   +  L+    +   I       + D+   R R +L 
Sbjct  213  GFAFFGLLTYLPL-YQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLA  271

Query  340  AVNSILCLIGLPILGFHSNNAVRYFGVFLATAGANANIPAIMAYQANNVRGQWTRALSSA  399
             +  IL  +GL +L    ++      + L   G     PA+ A  ++    +  R  +S 
Sbjct  272  LLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEE-RGTASG  330

Query  400  TLVGFGGIGGILSS  413
                 G +GG L  
Sbjct  331  LYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.142    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 587408632


Query= TCONS_00034525

Length=286


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00029667

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            106     6e-26


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 106 bits (266),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 141/373 (38%), Gaps = 33/373 (9%)

Query  54   LAYCISLMDRTNLSMAAVAGMTKELGLHIGTRYSVIVLIFFVPYVIFQPIMTVITRKLGP  113
            LA  ++ + R+ L  A    + ++LG+       +++ +F + Y + QP+   ++ + G 
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLGISPTE-IGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  114  TFFLGAIVISWGAILIGMGFTKDWKQMTVCRALLGLLEAGYFPGCVYLLSSWYVRYDVQK  173
               L   ++ +   L+ + F      + V R L GL     FP  + L++ W+   +  +
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  174  RFSVFYLIGCVASALAGILAFGLSQMGGIQGLGGWRWIFIMEGVITGVIGVLTLLLLVDF  233
               +      + +AL  +L       G +  L GWR  F++  +++ +  VL L      
Sbjct  122  ALGLVSAGFGLGAALGPLLG------GLLASLFGWRAAFLILAILSLLAAVLLL-----L  170

Query  234  PDRAHKSWRFLSEKECAFVVRRINRDRSDADDEPFSLIRFLTPALDPKIWGFAMIFLCTT  293
            P    +S R    +E                    SLI      L   +    +  L   
Sbjct  171  PRPPPESKRPKPAEE-----------------ARLSLIVAWKALLRDPVLWLLLALLLFG  213

Query  294  TVTYAIAYFLPIILQQGMGYSVGASQCLVAPPFVFAGIVMFSSAWVGDKY--RVRGVLVA  351
               + +  +LP + Q+ +G S   +  L+    +   I       + D+   R R +L  
Sbjct  214  FAFFGLLTYLP-LYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLAL  272

Query  352  VNSILCLIGLPILGFHSNNAVRYFGVFLATAGANANIPAIMAYQANNVRGQWTRALSSAT  411
            +  IL  +GL +L    ++      + L   G     PA+ A  ++    +  R  +S  
Sbjct  273  LLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEE-RGTASGL  331

Query  412  LVGFGGIGGILSS  424
                G +GG L  
Sbjct  332  YNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.143    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0698    0.140     1.90     42.6     43.6 

Effective search space used: 595027938


Query= TCONS_00034527

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            66.7    7e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 66.7 bits (163),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 56/296 (19%), Positives = 103/296 (35%), Gaps = 32/296 (11%)

Query  1    MGFTKDWKQMTVCRALLGLLEAGYFPGCVYLLSSWYVRYDVQKRFSVFYLIGCVASALAG  60
            + F      + V R L GL     FP  + L++ W+   +  +   +      + +AL  
Sbjct  79   LLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGP  138

Query  61   ILAFGLSQMGGIQGLGGWRWIFIMEGVITGVIGVLTLLLLVDFPDRAHKSWRFLSEKECA  120
            +L       G +  L GWR  F++  +++ +  VL LL       +  K           
Sbjct  139  LLG------GLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAE--------  184

Query  121  FVVRRINRDRSDADDEPFSLIRFLTPALDPKIWGFAMIFLCTTTVTYAIAYFLPIILQQG  180
                          +   SLI      L   +    +  L      + +  +LP + Q+ 
Sbjct  185  --------------EARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLP-LYQEV  229

Query  181  MGYSVGASQCLVAPPFVFAGIVMFSSAWVGDKY--RVRGVLVAVNSILCLIGLPILGFHS  238
            +G S   +  L+    +   I       + D+   R R +L  +  IL  +GL +L    
Sbjct  230  LGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTL  289

Query  239  NNAVRYFGVFLATAGANANIPAIMAYQANNVRGQWTRALSSATLVGFGGIGGILSS  294
            ++      + L   G     PA+ A  ++    +  R  +S      G +GG L  
Sbjct  290  SSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEE-RGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.329    0.143    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00034526

Length=370


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00029670

Length=175


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.146    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160781924


Query= TCONS_00029668

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            64.7    3e-12


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 64.7 bits (158),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 53/316 (17%), Positives = 108/316 (34%), Gaps = 45/316 (14%)

Query  54   LAYCISLMDRTNLSMAAVAGMTKELGLHIGTRYSVIVLIFFVPYVIFQPIMTVITRKLGP  113
            LA  ++ + R+ L  A    + ++LG+       +++ +F + Y + QP+   ++ + G 
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLGISPTE-IGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  114  TFFLGAIVISWGAILIVCFPVQVE------------GHQPNHKTGNGLHERLEANDYDVQ  161
               L   ++ +   L++                   G          L         +  
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADW-FPPEERG  120

Query  162  KRFSVFYLIGCVASALAGILAFGLSQMGGIQGLGGWRWIFIMEGVITGVIGVLTLLLLVD  221
            +   +      + +AL  +L       G +  L GWR  F++  +++ +  VL L     
Sbjct  121  RALGLVSAGFGLGAALGPLLG------GLLASLFGWRAAFLILAILSLLAAVLLL-----  169

Query  222  FPDRAHKSWRFLSEKECAFVVRRINRDRSDADDEPFSLIRFLTPALDPKIWGFAMIFLCT  281
             P    +S R    +E                    SLI      L   +    +  L  
Sbjct  170  LPRPPPESKRPKPAEE-----------------ARLSLIVAWKALLRDPVLWLLLALLLF  212

Query  282  TTVTYAIAYFLPIILQQGMGYSVGASQCLVAPPFVFAGIVMFSSAWVGDKY--RVRGVLV  339
                + +  +LP + Q+ +G S   +  L+    +   I       + D+   R R +L 
Sbjct  213  GFAFFGLLTYLP-LYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLA  271

Query  340  AVNSILCLIGLPILGF  355
             +  IL  +GL +L  
Sbjct  272  LLLLILAALGLLLLSL  287



Lambda      K        H        a         alpha
   0.328    0.143    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00034528

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00029671

Length=261


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00029673

Length=286


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00029672

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            74.8    2e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 74.8 bits (184),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 59/317 (19%), Positives = 111/317 (35%), Gaps = 32/317 (10%)

Query  7    KLGPTFFLGAIVISWGAILIGMGFTKDWKQMTVCRALLGLLEAGYFPGCVYLLSSWYVRY  66
            + G    L   ++ +   L+ + F      + V R L GL     FP  + L++ W+   
Sbjct  58   RFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE  117

Query  67   DVQKRFSVFYLIGCVASALAGILAFGLSQMGGIQGLGGWRWIFIMEGVITGVIGVLTLLL  126
            +  +   +      + +AL  +L       G +  L GWR  F++  +++ +  VL LL 
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLG------GLLASLFGWRAAFLILAILSLLAAVLLLLP  171

Query  127  LVDFPDRAHKSWRFLSEKECAFVVRRINRDRSDADDEPFSLIRFLTPALDPKIWGFAMIF  186
                  +  K                         +   SLI      L   +    +  
Sbjct  172  RPPPESKRPKPAE----------------------EARLSLIVAWKALLRDPVLWLLLAL  209

Query  187  LCTTTVTYAIAYFLPIILQQGMGYSVGASQCLVAPPFVFAGIVMFSSAWVGDKY--RVRG  244
            L      + +  +LP + Q+ +G S   +  L+    +   I       + D+   R R 
Sbjct  210  LLFGFAFFGLLTYLP-LYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRL  268

Query  245  VLVAVNSILCLIGLPILGFHSNNAVRYFGVFLATAGANANIPAIMAYQANNVRGQWTRAL  304
            +L  +  IL  +GL +L    ++      + L   G     PA+ A  ++    +  R  
Sbjct  269  LLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEE-RGT  327

Query  305  SSATLVGFGGIGGILSS  321
            +S      G +GG L  
Sbjct  328  ASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.330    0.144    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00029675

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            106     6e-26


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 106 bits (266),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 141/373 (38%), Gaps = 33/373 (9%)

Query  54   LAYCISLMDRTNLSMAAVAGMTKELGLHIGTRYSVIVLIFFVPYVIFQPIMTVITRKLGP  113
            LA  ++ + R+ L  A    + ++LG+       +++ +F + Y + QP+   ++ + G 
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLGISPTE-IGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  114  TFFLGAIVISWGAILIGMGFTKDWKQMTVCRALLGLLEAGYFPGCVYLLSSWYVRYDVQK  173
               L   ++ +   L+ + F      + V R L GL     FP  + L++ W+   +  +
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGR  121

Query  174  RFSVFYLIGCVASALAGILAFGLSQMGGIQGLGGWRWIFIMEGVITGVIGVLTLLLLVDF  233
               +      + +AL  +L       G +  L GWR  F++  +++ +  VL L      
Sbjct  122  ALGLVSAGFGLGAALGPLLG------GLLASLFGWRAAFLILAILSLLAAVLLL-----L  170

Query  234  PDRAHKSWRFLSEKECAFVVRRINRDRSDADDEPFSLIRFLTPALDPKIWGFAMIFLCTT  293
            P    +S R    +E                    SLI      L   +    +  L   
Sbjct  171  PRPPPESKRPKPAEE-----------------ARLSLIVAWKALLRDPVLWLLLALLLFG  213

Query  294  TVTYAIAYFLPIILQQGMGYSVGASQCLVAPPFVFAGIVMFSSAWVGDKY--RVRGVLVA  351
               + +  +LP + Q+ +G S   +  L+    +   I       + D+   R R +L  
Sbjct  214  FAFFGLLTYLP-LYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLAL  272

Query  352  VNSILCLIGLPILGFHSNNAVRYFGVFLATAGANANIPAIMAYQANNVRGQWTRALSSAT  411
            +  IL  +GL +L    ++      + L   G     PA+ A  ++    +  R  +S  
Sbjct  273  LLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEE-RGTASGL  331

Query  412  LVGFGGIGGILSS  424
                G +GG L  
Sbjct  332  YNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.328    0.143    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595027938


Query= TCONS_00034530

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.5    7e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.5 bits (173),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 128/374 (34%), Gaps = 46/374 (12%)

Query  54   LAYCISLMDRTNLSMAAVAGMTKELGLHIGTRYSVIVLIFFVPYVIFQPIMTVITRKLGP  113
            LA  ++ + R+ L  A    + ++LG+       +++ +F + Y + QP+   ++ + G 
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLGISPTE-IGLLLTLFSLGYALAQPLAGRLSDRFGR  61

Query  114  TFFLGAIVISWGAILIVCFPVQVE------------GHQPNHKTGNGLHERLEANDYDVQ  161
               L   ++ +   L++                   G          L         +  
Sbjct  62   RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADW-FPPEERG  120

Query  162  KRFSVFYLIGCVASALAGILAFGLSQMGGIQGLGGWRWIFIMEGVITGVIGVLTLLLLVD  221
            +   +      + +AL  +L       G +  L GWR  F++  +++ +  VL L     
Sbjct  121  RALGLVSAGFGLGAALGPLLG------GLLASLFGWRAAFLILAILSLLAAVLLL-----  169

Query  222  FPDRAHKSWRFLSEKECAFVVRRINRDRSDADDEPFSLIRFLTPALDPKIWGFAMIFLCT  281
             P    +S R    +E                    SLI      L   +    +  L  
Sbjct  170  LPRPPPESKRPKPAEE-----------------ARLSLIVAWKALLRDPVLWLLLALLLF  212

Query  282  TTVTYAIAYFLPIILQQGMGYSVGASQCLVAPPFVFAGIVMFSSAWVGDKY--RVRGVLV  339
                + +  +LP+  Q+ +G S   +  L+    +   I       + D+   R R +L 
Sbjct  213  GFAFFGLLTYLPL-YQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLA  271

Query  340  AVNSILCLIGLPILGFHSNNAVRYFGVFLATAGANANIPAIMAYQANNVRGQWTRALSSA  399
             +  IL  +GL +L    ++      + L   G     PA+ A  ++    +  R  +S 
Sbjct  272  LLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEE-RGTASG  330

Query  400  TLVGFGGIGGILSS  413
                 G +GG L  
Sbjct  331  LYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.142    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00034529

Length=279


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00034531

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00029676

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00029678

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            74.8    2e-15


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 74.8 bits (184),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 59/317 (19%), Positives = 111/317 (35%), Gaps = 32/317 (10%)

Query  7    KLGPTFFLGAIVISWGAILIGMGFTKDWKQMTVCRALLGLLEAGYFPGCVYLLSSWYVRY  66
            + G    L   ++ +   L+ + F      + V R L GL     FP  + L++ W+   
Sbjct  58   RFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPE  117

Query  67   DVQKRFSVFYLIGCVASALAGILAFGLSQMGGIQGLGGWRWIFIMEGVITGVIGVLTLLL  126
            +  +   +      + +AL  +L       G +  L GWR  F++  +++ +  VL LL 
Sbjct  118  ERGRALGLVSAGFGLGAALGPLLG------GLLASLFGWRAAFLILAILSLLAAVLLLLP  171

Query  127  LVDFPDRAHKSWRFLSEKECAFVVRRINRDRSDADDEPFSLIRFLTPALDPKIWGFAMIF  186
                  +  K                         +   SLI      L   +    +  
Sbjct  172  RPPPESKRPKPAE----------------------EARLSLIVAWKALLRDPVLWLLLAL  209

Query  187  LCTTTVTYAIAYFLPIILQQGMGYSVGASQCLVAPPFVFAGIVMFSSAWVGDKY--RVRG  244
            L      + +  +LP + Q+ +G S   +  L+    +   I       + D+   R R 
Sbjct  210  LLFGFAFFGLLTYLP-LYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRL  268

Query  245  VLVAVNSILCLIGLPILGFHSNNAVRYFGVFLATAGANANIPAIMAYQANNVRGQWTRAL  304
            +L  +  IL  +GL +L    ++      + L   G     PA+ A  ++    +  R  
Sbjct  269  LLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEE-RGT  327

Query  305  SSATLVGFGGIGGILSS  321
            +S      G +GG L  
Sbjct  328  ASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.330    0.144    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00029679

Length=407


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00029682

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00029683

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00029684

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00029685

Length=1060
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396772 pfam02347, GDC-P, Glycine cleavage system P-protein. T...  546     0.0  


>CDD:396772 pfam02347, GDC-P, Glycine cleavage system P-protein.  This family 
consists of Glycine cleavage system P-proteins EC:1.4.4.2 
from bacterial, mammalian and plant sources. The P protein 
is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 
(GDC) also annotated as glycine cleavage system or 
glycine synthase. GDC consists of four proteins P, H, L and 
T. The reaction catalyzed by this protein is:- Glycine + lipoylprotein 
<=> S-aminomethyldihydrolipoylprotein + CO2.
Length=428

 Score = 546 bits (1409),  Expect = 0.0, Method: Composition-based stats.
 Identities = 239/457 (52%), Positives = 302/457 (66%), Gaps = 29/457 (6%)

Query  83   RRHIGPSPEAAQEMLAALDPPVATLDEFVKQVLPADILSKKDLTVTPPSADINLPRSSVH  142
             RHIGPS +  QEMLA L    ++LD+ + + +P +I   K L +  P            
Sbjct  1    DRHIGPSEKDQQEMLATLG--YSSLDDLIGKAVPKNIRFAKPLQLPAP------------  46

Query  143  GGLGETDMLKLLETYRKQIDISGKSYLGTGYYPTIVPPVILRNILENPAWYTSYTPYQPE  202
                E + L  LE    + +   +S++G GYY TI+PPVILRNILENP WYT+YTPYQPE
Sbjct  47   --KSEYEALAELEAIASK-NTVYRSFIGMGYYDTILPPVILRNILENPEWYTAYTPYQPE  103

Query  203  ISQGRLESLLNFQTLTADLTGLPFANASVLDEATAAAEAMTMSLATLPMAKQKKPGKAYV  262
            ISQGRLE+LLNFQT+  DLTGL  ANAS+LDE TAAAEA       L     KK GK +V
Sbjct  104  ISQGRLEALLNFQTMICDLTGLDIANASLLDEGTAAAEA-----MALAARASKKKGKKFV  158

Query  263  VSHLCHPQTIAVMQSRAEGFGINLVVGDIMANDFELVKKQGDNLIGVLAQYPDTEGGVYD  322
            V    HPQT+ V+++RA+ FGI +V  D        +K    ++ GVL QYP+T+G + D
Sbjct  159  VDKDVHPQTLEVLKTRAKPFGIEIVEVDYTEEGVTDLK----DVFGVLVQYPNTDGRIED  214

Query  323  FQALSDSIHAAGGTFSVATDLLALTLLKAPGEFGADIAFGNAQRFGVPMGFGGPHAAFFA  382
            ++ L +  H       VA DLLALTLLK PGEFGADIA G+AQRFGVP+G+GGPHA FFA
Sbjct  215  YKELIELAHQRKSLVVVAADLLALTLLKPPGEFGADIAVGSAQRFGVPLGYGGPHAGFFA  274

Query  383  CADKYKRKVPGRVVGVSKDRLGNRALRLALQTREQHIRREKATSNICTAQALLANMSAMY  442
               +  RK+PGR+VGVSKD  G RALRLALQTREQHIRR+KATSNICTAQALLANM++MY
Sbjct  275  VKKELVRKMPGRLVGVSKDANGKRALRLALQTREQHIRRDKATSNICTAQALLANMASMY  334

Query  443  AVYHGPAGLKSIAQRVMAMTSTLQEKLTALGYNVPVKGSAIFDTLTVEFGSSEEADALIA  502
            AVYHGP GLK IA+R+ ++T  L + L  LG+   +     FDTL +E    +  + ++A
Sbjct  335  AVYHGPNGLKEIARRIHSLTLYLAKALKKLGHE--LVHKHFFDTLLIEVE-DKAVEEVLA  391

Query  503  AAQEQNIFLRRVSSSKVGISLDETVGREEVKSLLQVF  539
             A+ + I LR V    VGI+LDETV +E++  LLQVF
Sbjct  392  RAEARGINLRYVDLGHVGIALDETVTKEDIDDLLQVF  428



Lambda      K        H        a         alpha
   0.317    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1364904464


Query= TCONS_00034532

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00029686

Length=1059
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396772 pfam02347, GDC-P, Glycine cleavage system P-protein. T...  546     0.0  


>CDD:396772 pfam02347, GDC-P, Glycine cleavage system P-protein.  This family 
consists of Glycine cleavage system P-proteins EC:1.4.4.2 
from bacterial, mammalian and plant sources. The P protein 
is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 
(GDC) also annotated as glycine cleavage system or 
glycine synthase. GDC consists of four proteins P, H, L and 
T. The reaction catalyzed by this protein is:- Glycine + lipoylprotein 
<=> S-aminomethyldihydrolipoylprotein + CO2.
Length=428

 Score = 546 bits (1408),  Expect = 0.0, Method: Composition-based stats.
 Identities = 239/457 (52%), Positives = 302/457 (66%), Gaps = 29/457 (6%)

Query  83   RRHIGPSPEAAQEMLAALDPPVATLDEFVKQVLPADILSKKDLTVTPPSADINLPRSSVH  142
             RHIGPS +  QEMLA L    ++LD+ + + +P +I   K L +  P            
Sbjct  1    DRHIGPSEKDQQEMLATLG--YSSLDDLIGKAVPKNIRFAKPLQLPAP------------  46

Query  143  GGLGETDMLKLLETYRKQIDISGKSYLGTGYYPTIVPPVILRNILENPAWYTSYTPYQPE  202
                E + L  LE    + +   +S++G GYY TI+PPVILRNILENP WYT+YTPYQPE
Sbjct  47   --KSEYEALAELEAIASK-NTVYRSFIGMGYYDTILPPVILRNILENPEWYTAYTPYQPE  103

Query  203  ISQGRLESLLNFQTLTADLTGLPFANASVLDEATAAAEAMTMSLATLPMAKQKKPGKAYV  262
            ISQGRLE+LLNFQT+  DLTGL  ANAS+LDE TAAAEA       L     KK GK +V
Sbjct  104  ISQGRLEALLNFQTMICDLTGLDIANASLLDEGTAAAEA-----MALAARASKKKGKKFV  158

Query  263  VSHLCHPQTIAVMQSRAEGFGINLVVGDIMANDFELVKKQGDNLIGVLAQYPDTEGGVYD  322
            V    HPQT+ V+++RA+ FGI +V  D        +K    ++ GVL QYP+T+G + D
Sbjct  159  VDKDVHPQTLEVLKTRAKPFGIEIVEVDYTEEGVTDLK----DVFGVLVQYPNTDGRIED  214

Query  323  FQALSDSIHAAGGTFSVATDLLALTLLKAPGEFGADIAFGNAQRFGVPMGFGGPHAAFFA  382
            ++ L +  H       VA DLLALTLLK PGEFGADIA G+AQRFGVP+G+GGPHA FFA
Sbjct  215  YKELIELAHQRKSLVVVAADLLALTLLKPPGEFGADIAVGSAQRFGVPLGYGGPHAGFFA  274

Query  383  CADKYKRKVPGRVVGVSKDRLGNRALRLALQTREQHIRREKATSNICTAQALLANMSAMY  442
               +  RK+PGR+VGVSKD  G RALRLALQTREQHIRR+KATSNICTAQALLANM++MY
Sbjct  275  VKKELVRKMPGRLVGVSKDANGKRALRLALQTREQHIRRDKATSNICTAQALLANMASMY  334

Query  443  AVYHGPAGLKSIAQRVMAMTSTLQEKLTALGYNVPVKGSAIFDTLTVEFGSSEEADALIA  502
            AVYHGP GLK IA+R+ ++T  L + L  LG+   +     FDTL +E    +  + ++A
Sbjct  335  AVYHGPNGLKEIARRIHSLTLYLAKALKKLGHE--LVHKHFFDTLLIEVE-DKAVEEVLA  391

Query  503  AAQEQNIFLRRVSSSKVGISLDETVGREEVKSLLQVF  539
             A+ + I LR V    VGI+LDETV +E++  LLQVF
Sbjct  392  RAEARGINLRYVDLGHVGIALDETVTKEDIDDLLQVF  428



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1363488588


Query= TCONS_00029687

Length=1060
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396772 pfam02347, GDC-P, Glycine cleavage system P-protein. T...  546     0.0  


>CDD:396772 pfam02347, GDC-P, Glycine cleavage system P-protein.  This family 
consists of Glycine cleavage system P-proteins EC:1.4.4.2 
from bacterial, mammalian and plant sources. The P protein 
is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 
(GDC) also annotated as glycine cleavage system or 
glycine synthase. GDC consists of four proteins P, H, L and 
T. The reaction catalyzed by this protein is:- Glycine + lipoylprotein 
<=> S-aminomethyldihydrolipoylprotein + CO2.
Length=428

 Score = 546 bits (1408),  Expect = 0.0, Method: Composition-based stats.
 Identities = 239/457 (52%), Positives = 302/457 (66%), Gaps = 29/457 (6%)

Query  83   RRHIGPSPEAAQEMLAALDPPVATLDEFVKQVLPADILSKKDLTVTPPSADINLPRSSVH  142
             RHIGPS +  QEMLA L    ++LD+ + + +P +I   K L +  P            
Sbjct  1    DRHIGPSEKDQQEMLATLG--YSSLDDLIGKAVPKNIRFAKPLQLPAP------------  46

Query  143  GGLGETDMLKLLETYRKQIDISGKSYLGTGYYPTIVPPVILRNILENPAWYTSYTPYQPE  202
                E + L  LE    + +   +S++G GYY TI+PPVILRNILENP WYT+YTPYQPE
Sbjct  47   --KSEYEALAELEAIASK-NTVYRSFIGMGYYDTILPPVILRNILENPEWYTAYTPYQPE  103

Query  203  ISQGRLESLLNFQTLTADLTGLPFANASVLDEATAAAEAMTMSLATLPMAKQKKPGKAYV  262
            ISQGRLE+LLNFQT+  DLTGL  ANAS+LDE TAAAEA       L     KK GK +V
Sbjct  104  ISQGRLEALLNFQTMICDLTGLDIANASLLDEGTAAAEA-----MALAARASKKKGKKFV  158

Query  263  VSHLCHPQTIAVMQSRAEGFGINLVVGDIMANDFELVKKQGDNLIGVLAQYPDTEGGVYD  322
            V    HPQT+ V+++RA+ FGI +V  D        +K    ++ GVL QYP+T+G + D
Sbjct  159  VDKDVHPQTLEVLKTRAKPFGIEIVEVDYTEEGVTDLK----DVFGVLVQYPNTDGRIED  214

Query  323  FQALSDSIHAAGGTFSVATDLLALTLLKAPGEFGADIAFGNAQRFGVPMGFGGPHAAFFA  382
            ++ L +  H       VA DLLALTLLK PGEFGADIA G+AQRFGVP+G+GGPHA FFA
Sbjct  215  YKELIELAHQRKSLVVVAADLLALTLLKPPGEFGADIAVGSAQRFGVPLGYGGPHAGFFA  274

Query  383  CADKYKRKVPGRVVGVSKDRLGNRALRLALQTREQHIRREKATSNICTAQALLANMSAMY  442
               +  RK+PGR+VGVSKD  G RALRLALQTREQHIRR+KATSNICTAQALLANM++MY
Sbjct  275  VKKELVRKMPGRLVGVSKDANGKRALRLALQTREQHIRRDKATSNICTAQALLANMASMY  334

Query  443  AVYHGPAGLKSIAQRVMAMTSTLQEKLTALGYNVPVKGSAIFDTLTVEFGSSEEADALIA  502
            AVYHGP GLK IA+R+ ++T  L + L  LG+   +     FDTL +E    +  + ++A
Sbjct  335  AVYHGPNGLKEIARRIHSLTLYLAKALKKLGHE--LVHKHFFDTLLIEVE-DKAVEEVLA  391

Query  503  AAQEQNIFLRRVSSSKVGISLDETVGREEVKSLLQVF  539
             A+ + I LR V    VGI+LDETV +E++  LLQVF
Sbjct  392  RAEARGINLRYVDLGHVGIALDETVTKEDIDDLLQVF  428



Lambda      K        H        a         alpha
   0.317    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1364904464


Query= TCONS_00034533

Length=986
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396772 pfam02347, GDC-P, Glycine cleavage system P-protein. T...  504     4e-171


>CDD:396772 pfam02347, GDC-P, Glycine cleavage system P-protein.  This family 
consists of Glycine cleavage system P-proteins EC:1.4.4.2 
from bacterial, mammalian and plant sources. The P protein 
is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 
(GDC) also annotated as glycine cleavage system or 
glycine synthase. GDC consists of four proteins P, H, L and 
T. The reaction catalyzed by this protein is:- Glycine + lipoylprotein 
<=> S-aminomethyldihydrolipoylprotein + CO2.
Length=428

 Score = 504 bits (1299),  Expect = 4e-171, Method: Composition-based stats.
 Identities = 216/394 (55%), Positives = 263/394 (67%), Gaps = 26/394 (7%)

Query  83   RRHIGPSPEAAQEMLAALDPPVATLDEFVKQVLPADILSKKDLTVTPPSADINLPRSSVH  142
             RHIGPS +  QEMLA L    ++LD+ + + +P +I   K L +  P            
Sbjct  1    DRHIGPSEKDQQEMLATLG--YSSLDDLIGKAVPKNIRFAKPLQLPAP------------  46

Query  143  GGLGETDMLKLLETYRKQIDISGKSYLGTGYYPTIVPPVILRNILENPAWYTSYTPYQPE  202
                E + L  LE    + +   +S++G GYY TI+PPVILRNILENP WYT+YTPYQPE
Sbjct  47   --KSEYEALAELEAIASK-NTVYRSFIGMGYYDTILPPVILRNILENPEWYTAYTPYQPE  103

Query  203  ISQGRLESLLNFQTLTADLTGLPFANASVLDEATAAAEAMTMSLATLPMAKQKKPGKAYV  262
            ISQGRLE+LLNFQT+  DLTGL  ANAS+LDE TAAAEA       L     KK GK +V
Sbjct  104  ISQGRLEALLNFQTMICDLTGLDIANASLLDEGTAAAEA-----MALAARASKKKGKKFV  158

Query  263  VSHLCHPQTIAVMQSRAEGFGINLVVGDIMANDFELVKKQGDNLIGVLAQYPDTEGGVYD  322
            V    HPQT+ V+++RA+ FGI +V  D        +K    ++ GVL QYP+T+G + D
Sbjct  159  VDKDVHPQTLEVLKTRAKPFGIEIVEVDYTEEGVTDLK----DVFGVLVQYPNTDGRIED  214

Query  323  FQALSDSIHAAGGTFSVATDLLALTLLKAPGEFGADIAFGNAQRFGVPMGFGGPHAAFFA  382
            ++ L +  H       VA DLLALTLLK PGEFGADIA G+AQRFGVP+G+GGPHA FFA
Sbjct  215  YKELIELAHQRKSLVVVAADLLALTLLKPPGEFGADIAVGSAQRFGVPLGYGGPHAGFFA  274

Query  383  CADKYKRKVPGRVVGVSKDRLGNRALRLALQTREQHIRREKATSNICTAQALLANMSAMY  442
               +  RK+PGR+VGVSKD  G RALRLALQTREQHIRR+KATSNICTAQALLANM++MY
Sbjct  275  VKKELVRKMPGRLVGVSKDANGKRALRLALQTREQHIRRDKATSNICTAQALLANMASMY  334

Query  443  AVYHGPAGLKSIAQRVKSLLQVFAKHAGKGEVEL  476
            AVYHGP GLK IA+R+ SL    AK   K   EL
Sbjct  335  AVYHGPNGLKEIARRIHSLTLYLAKALKKLGHEL  368



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1260129640


Query= TCONS_00029688

Length=1060
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396772 pfam02347, GDC-P, Glycine cleavage system P-protein. T...  546     0.0  


>CDD:396772 pfam02347, GDC-P, Glycine cleavage system P-protein.  This family 
consists of Glycine cleavage system P-proteins EC:1.4.4.2 
from bacterial, mammalian and plant sources. The P protein 
is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 
(GDC) also annotated as glycine cleavage system or 
glycine synthase. GDC consists of four proteins P, H, L and 
T. The reaction catalyzed by this protein is:- Glycine + lipoylprotein 
<=> S-aminomethyldihydrolipoylprotein + CO2.
Length=428

 Score = 546 bits (1409),  Expect = 0.0, Method: Composition-based stats.
 Identities = 239/457 (52%), Positives = 302/457 (66%), Gaps = 29/457 (6%)

Query  83   RRHIGPSPEAAQEMLAALDPPVATLDEFVKQVLPADILSKKDLTVTPPSADINLPRSSVH  142
             RHIGPS +  QEMLA L    ++LD+ + + +P +I   K L +  P            
Sbjct  1    DRHIGPSEKDQQEMLATLG--YSSLDDLIGKAVPKNIRFAKPLQLPAP------------  46

Query  143  GGLGETDMLKLLETYRKQIDISGKSYLGTGYYPTIVPPVILRNILENPAWYTSYTPYQPE  202
                E + L  LE    + +   +S++G GYY TI+PPVILRNILENP WYT+YTPYQPE
Sbjct  47   --KSEYEALAELEAIASK-NTVYRSFIGMGYYDTILPPVILRNILENPEWYTAYTPYQPE  103

Query  203  ISQGRLESLLNFQTLTADLTGLPFANASVLDEATAAAEAMTMSLATLPMAKQKKPGKAYV  262
            ISQGRLE+LLNFQT+  DLTGL  ANAS+LDE TAAAEA       L     KK GK +V
Sbjct  104  ISQGRLEALLNFQTMICDLTGLDIANASLLDEGTAAAEA-----MALAARASKKKGKKFV  158

Query  263  VSHLCHPQTIAVMQSRAEGFGINLVVGDIMANDFELVKKQGDNLIGVLAQYPDTEGGVYD  322
            V    HPQT+ V+++RA+ FGI +V  D        +K    ++ GVL QYP+T+G + D
Sbjct  159  VDKDVHPQTLEVLKTRAKPFGIEIVEVDYTEEGVTDLK----DVFGVLVQYPNTDGRIED  214

Query  323  FQALSDSIHAAGGTFSVATDLLALTLLKAPGEFGADIAFGNAQRFGVPMGFGGPHAAFFA  382
            ++ L +  H       VA DLLALTLLK PGEFGADIA G+AQRFGVP+G+GGPHA FFA
Sbjct  215  YKELIELAHQRKSLVVVAADLLALTLLKPPGEFGADIAVGSAQRFGVPLGYGGPHAGFFA  274

Query  383  CADKYKRKVPGRVVGVSKDRLGNRALRLALQTREQHIRREKATSNICTAQALLANMSAMY  442
               +  RK+PGR+VGVSKD  G RALRLALQTREQHIRR+KATSNICTAQALLANM++MY
Sbjct  275  VKKELVRKMPGRLVGVSKDANGKRALRLALQTREQHIRRDKATSNICTAQALLANMASMY  334

Query  443  AVYHGPAGLKSIAQRVMAMTSTLQEKLTALGYNVPVKGSAIFDTLTVEFGSSEEADALIA  502
            AVYHGP GLK IA+R+ ++T  L + L  LG+   +     FDTL +E    +  + ++A
Sbjct  335  AVYHGPNGLKEIARRIHSLTLYLAKALKKLGHE--LVHKHFFDTLLIEVE-DKAVEEVLA  391

Query  503  AAQEQNIFLRRVSSSKVGISLDETVGREEVKSLLQVF  539
             A+ + I LR V    VGI+LDETV +E++  LLQVF
Sbjct  392  RAEARGINLRYVDLGHVGIALDETVTKEDIDDLLQVF  428



Lambda      K        H        a         alpha
   0.317    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1364904464


Query= TCONS_00029690

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00029691

Length=539
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family. This f...  154     7e-43


>CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family.  This family 
of enzymes are a a large metal dependent hydrolase superfamily. 
The family includes Adenine deaminase EC:3.5.4.2 that hydrolyzes 
adenine to form hypoxanthine and ammonia. Adenine deaminases 
reaction is important for adenine utilisation as a 
purine and also as a nitrogen source. This family also includes 
dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, 
EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 
6-phosphate + H2O <=> D-glucosamine 6-phosphate 
+ acetate. This family includes the catalytic domain 
of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are 
also included.
Length=334

 Score = 154 bits (390),  Expect = 7e-43, Method: Composition-based stats.
 Identities = 112/402 (28%), Positives = 150/402 (37%), Gaps = 80/402 (20%)

Query  94   FPGFIDTHIHAPQYPNSGIFGSSTLLDWLETYTFPLESSFGDASKARAVYSRVIARTLAN  153
             PG ID H+H       GI               P E        A       I   L +
Sbjct  3    LPGLIDAHVHLEMGLLRGI-------------PVPPEF-------AYEALRLGITTMLKS  42

Query  154  GTTCASYFATIHVPATNLLASLCHS--RGQRALIGRVCMDNPSFCPDYYLDSSPESSVSK  211
            GTT               L         G R L     +D          D   E   + 
Sbjct  43   GTTTVLDMGATTSTGIEALLEAAEELPLGLRFLGPGCSLDT---------DGELEGRKAL  93

Query  212  SKETIAHIHSI-DPAGTLIHPILTPRFAPTCSPPALHGLAQLAQSYNPPLHIQTHLSENT  270
             ++  A    I   A  ++   L P  APT S   L    + A+ Y   L +  H  E  
Sbjct  94   REKLKAGAEFIKGMADGVVFVGLAPHGAPTFSDDELKAALEEAKKYG--LPVAIHALETK  151

Query  271  GEISLVRELFP---QSKDYTSVYDDFGLLTP-RTILAHAVHLSPSERELIAAR--GAKVS  324
            GE+      F    +   +  V +  GLL   + ILAH VHLSP+E  L+A    GA V+
Sbjct  152  GEVEDAIAAFGGGIEHGTHLEVAESGGLLDIIKLILAHGVHLSPTEANLLAEHLKGAGVA  211

Query  325  HCPASNSALGSGLCAVRKLLEAGVEVGLGTDVSG-GYNCSVLEAVRQGCLVSRLLRHSGT  383
            HCP SNS L SG  A+RK LE GV+VGLGTD +G G + ++LE +R    +         
Sbjct  212  HCPFSNSKLRSGRIALRKALEDGVKVGLGTDGAGSGNSLNMLEELRLALELQF-------  264

Query  384  DDPGDGDDGEEVLSVEEGLYLATRGGAAVVDLAGEIGGFEVGMSFDAQMVRLGHSHTSSS  443
                   D E  LS  E L +AT   A  + L  ++G  EVG   D  +V L        
Sbjct  265  -------DPEGGLSPLEALRMATINPAKALGLDDKVGSIEVGKDADLVVVDL--------  309

Query  444  PTAEHGVVDVFGWESWTEKVHKWVWTGDDRNVKAVWVRGRLV  485
                             + +  +     D NVK V V+G++V
Sbjct  310  -----------------DPLAAFFGLKPDGNVKKVIVKGKIV  334



Lambda      K        H        a         alpha
   0.318    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 678301568


Query= TCONS_00034534

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464260 pfam14683, CBM-like, Polysaccharide lyase family 4, do...  91.5    2e-25


>CDD:464260 pfam14683, CBM-like, Polysaccharide lyase family 4, domain III. 
 CBM-like is domain III of rhamnogalacturonan lyase (RG-lyase). 
The full-length protein specifically recognizes and cleaves 
alpha-1,4 glycosidic bonds between l-rhamnose and d-galacturonic 
acids in the backbone of rhamnogalacturonan-I, a 
major component of the plant cell wall polysaccharide, pectin. 
This domain possesses a jelly roll beta-sandwich fold structurally 
homologous to carbohydrate binding modules (CBMs), 
and it carries two sulfate ions and a hexa-coordinated calcium 
ion.
Length=158

 Score = 91.5 bits (228),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 42/73 (58%), Gaps = 12/73 (16%)

Query  1   MHPSDSRMSSWGPLTYTVGSSSLSDFPMAIFKSVNS-PVTIKFTASSSQ-TGAATLRIGT  58
           MHPSD        LTYTVG+S  SD+    F  VN    TIKFT  S Q  GAATLRI  
Sbjct  27  MHPSD-------DLTYTVGTSDYSDW---FFAQVNRGTWTIKFTLDSVQAAGAATLRIAL  76

Query  59  TLSFAGGRPQVTV  71
             +FAGGR QV V
Sbjct  77  AGAFAGGRLQVRV  89



Lambda      K        H        a         alpha
   0.318    0.128    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00029689

Length=539
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family. This f...  154     7e-43


>CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family.  This family 
of enzymes are a a large metal dependent hydrolase superfamily. 
The family includes Adenine deaminase EC:3.5.4.2 that hydrolyzes 
adenine to form hypoxanthine and ammonia. Adenine deaminases 
reaction is important for adenine utilisation as a 
purine and also as a nitrogen source. This family also includes 
dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, 
EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 
6-phosphate + H2O <=> D-glucosamine 6-phosphate 
+ acetate. This family includes the catalytic domain 
of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are 
also included.
Length=334

 Score = 154 bits (390),  Expect = 7e-43, Method: Composition-based stats.
 Identities = 112/402 (28%), Positives = 150/402 (37%), Gaps = 80/402 (20%)

Query  94   FPGFIDTHIHAPQYPNSGIFGSSTLLDWLETYTFPLESSFGDASKARAVYSRVIARTLAN  153
             PG ID H+H       GI               P E        A       I   L +
Sbjct  3    LPGLIDAHVHLEMGLLRGI-------------PVPPEF-------AYEALRLGITTMLKS  42

Query  154  GTTCASYFATIHVPATNLLASLCHS--RGQRALIGRVCMDNPSFCPDYYLDSSPESSVSK  211
            GTT               L         G R L     +D          D   E   + 
Sbjct  43   GTTTVLDMGATTSTGIEALLEAAEELPLGLRFLGPGCSLDT---------DGELEGRKAL  93

Query  212  SKETIAHIHSI-DPAGTLIHPILTPRFAPTCSPPALHGLAQLAQSYNPPLHIQTHLSENT  270
             ++  A    I   A  ++   L P  APT S   L    + A+ Y   L +  H  E  
Sbjct  94   REKLKAGAEFIKGMADGVVFVGLAPHGAPTFSDDELKAALEEAKKYG--LPVAIHALETK  151

Query  271  GEISLVRELFP---QSKDYTSVYDDFGLLTP-RTILAHAVHLSPSERELIAAR--GAKVS  324
            GE+      F    +   +  V +  GLL   + ILAH VHLSP+E  L+A    GA V+
Sbjct  152  GEVEDAIAAFGGGIEHGTHLEVAESGGLLDIIKLILAHGVHLSPTEANLLAEHLKGAGVA  211

Query  325  HCPASNSALGSGLCAVRKLLEAGVEVGLGTDVSG-GYNCSVLEAVRQGCLVSRLLRHSGT  383
            HCP SNS L SG  A+RK LE GV+VGLGTD +G G + ++LE +R    +         
Sbjct  212  HCPFSNSKLRSGRIALRKALEDGVKVGLGTDGAGSGNSLNMLEELRLALELQF-------  264

Query  384  DDPGDGDDGEEVLSVEEGLYLATRGGAAVVDLAGEIGGFEVGMSFDAQMVRLGHSHTSSS  443
                   D E  LS  E L +AT   A  + L  ++G  EVG   D  +V L        
Sbjct  265  -------DPEGGLSPLEALRMATINPAKALGLDDKVGSIEVGKDADLVVVDL--------  309

Query  444  PTAEHGVVDVFGWESWTEKVHKWVWTGDDRNVKAVWVRGRLV  485
                             + +  +     D NVK V V+G++V
Sbjct  310  -----------------DPLAAFFGLKPDGNVKKVIVKGKIV  334



Lambda      K        H        a         alpha
   0.318    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 678301568


Query= TCONS_00029692

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family. This f...  148     9e-41


>CDD:460401 pfam01979, Amidohydro_1, Amidohydrolase family.  This family 
of enzymes are a a large metal dependent hydrolase superfamily. 
The family includes Adenine deaminase EC:3.5.4.2 that hydrolyzes 
adenine to form hypoxanthine and ammonia. Adenine deaminases 
reaction is important for adenine utilisation as a 
purine and also as a nitrogen source. This family also includes 
dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, 
EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 
6-phosphate + H2O <=> D-glucosamine 6-phosphate 
+ acetate. This family includes the catalytic domain 
of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are 
also included.
Length=334

 Score = 148 bits (375),  Expect = 9e-41, Method: Composition-based stats.
 Identities = 112/406 (28%), Positives = 150/406 (37%), Gaps = 84/406 (21%)

Query  94   FPGFIADRQDTHIHAPQYPNSGIFGSSTLLDWLETYTFPLESSFGDASKARAVYSRVIAR  153
             PG I    D H+H       GI               P E        A       I  
Sbjct  3    LPGLI----DAHVHLEMGLLRGI-------------PVPPEF-------AYEALRLGITT  38

Query  154  TLANGTTCASYFATIHVPATNLLASLCHS--RGQRALIGRVCMDNPSFCPDYYLDSSPES  211
             L +GTT               L         G R L     +D          D   E 
Sbjct  39   MLKSGTTTVLDMGATTSTGIEALLEAAEELPLGLRFLGPGCSLDT---------DGELEG  89

Query  212  SVSKSKETIAHIHSI-DPAGTLIHPILTPRFAPTCSPPALHGLAQLAQSYNPPLHIQTHL  270
              +  ++  A    I   A  ++   L P  APT S   L    + A+ Y   L +  H 
Sbjct  90   RKALREKLKAGAEFIKGMADGVVFVGLAPHGAPTFSDDELKAALEEAKKYG--LPVAIHA  147

Query  271  SENTGEISLVRELFP---QSKDYTSVYDDFGLLTP-RTILAHAVHLSPSERELIAAR--G  324
             E  GE+      F    +   +  V +  GLL   + ILAH VHLSP+E  L+A    G
Sbjct  148  LETKGEVEDAIAAFGGGIEHGTHLEVAESGGLLDIIKLILAHGVHLSPTEANLLAEHLKG  207

Query  325  AKVSHCPASNSALGSGLCAVRKLLEAGVEVGLGTDVSG-GYNCSVLEAVRQGCLVSRLLR  383
            A V+HCP SNS L SG  A+RK LE GV+VGLGTD +G G + ++LE +R    +     
Sbjct  208  AGVAHCPFSNSKLRSGRIALRKALEDGVKVGLGTDGAGSGNSLNMLEELRLALELQF---  264

Query  384  HSGTDDPGDGDDGEEVLSVEEGLYLATRGGAAVVDLAGEIGGFEVGMSFDAQMVRLGHSH  443
                       D E  LS  E L +AT   A  + L  ++G  EVG   D  +V L    
Sbjct  265  -----------DPEGGLSPLEALRMATINPAKALGLDDKVGSIEVGKDADLVVVDL----  309

Query  444  TSSSPTAEHGVVDVFGWESWTEKVHKWVWTGDDRNVKAVWVRGRLV  489
                                 + +  +     D NVK V V+G++V
Sbjct  310  ---------------------DPLAAFFGLKPDGNVKKVIVKGKIV  334



Lambda      K        H        a         alpha
   0.318    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684357832


Query= TCONS_00034535

Length=560
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:310284 pfam05577, Peptidase_S28, Serine carboxypeptidase S28....  190     3e-55


>CDD:310284 pfam05577, Peptidase_S28, Serine carboxypeptidase S28.  These 
serine proteases include several eukaryotic enzymes such as 
lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, 
and thymus-specific serine peptidase.
Length=434

 Score = 190 bits (485),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 117/477 (25%), Positives = 181/477 (38%), Gaps = 85/477 (18%)

Query  75   IDHEDPSV-GTYRNRFWVNEDFYISGSPIMVYDIGEATAEYSVSLLTNSSSWLSLLLQEF  133
            +DH DPS   T++ R++ N+  Y +G PI +   GE     S       +     L +EF
Sbjct  3    LDHFDPSNNRTFQQRYFYNDQHYRNGGPIFLMIGGEGPESAS----WVRNGHWLDLAKEF  58

Query  134  NAMGIVWEHRYYGGSLPYPVSQDMPVEHLKYLTTEQALADIPYFAANFSRLNHPDFDLTP  193
             A+    EHR+YG S P     D+  E+L+YL++ QALAD+  F    ++          
Sbjct  59   GALVFSLEHRFYGQSRPIG---DLSTENLRYLSSLQALADLASFIKAMNQ-KFNGLS---  111

Query  194  RGTPWIMIGGSYPGIRAAITRNKYPDTIFAAYASSAPVQAQLNMSVYYEQIYRAIVGNGY  253
              + WI  GGSY G  AA  R KYP  +  A ASSAP+ A+++   Y   +  ++   G 
Sbjct  112  -SSKWITFGGSYSGSLAAWFRKKYPHLVVGAVASSAPLLAKVDFKEYNMVVETSLRQTG-  169

Query  254  SNCTKDIQAALKYIDGQLSNKR-TFALIKRLFLGPDAEKNSNEDFTTALVTLYGPFQA--  310
              C   I+     ++  L  K    AL   L L P  ++ ++ D       +Y  FQ   
Sbjct  170  GECADAIEQGFAEVEQLLLTKEGRQALSSELQLCPPLDQTTDLDQLNFFSNIYSNFQGVV  229

Query  311  ------HGLWSGNQ-SLPDFCNYLELDPATNQSAGPEGLSPIHGSKYVAERWASFPYFIS  363
                   G  + N  ++PD C  +      N +     L                   I 
Sbjct  230  QYTYDGQGNSTLNGYTIPDMCKIM-----LNATTTDLIL--------------RVEVLI-  269

Query  364  LVNRMYGTNC----------NGLNASEPLSCDFSQTNTIPELISWTWQYCTEWGFFQSNN  413
             +                     NA      D S  +   +   WTWQ CTE+GF+Q+ +
Sbjct  270  QLFNYLNQKSGNNSTADISYQLANADY---GDSSYGSYADDR-QWTWQTCTEFGFYQTTD  325

Query  414  FGSHALLSSYQTLEYQQELCYRQFPNAVQAGVLPPRP-QTESLNEKFGGW-TIRPSNVYF  471
             G+     S   +    ++C   F  +  +  +  R   T   N  +GG      +NV F
Sbjct  326  SGNQ-PFGSPFPVTLYIDMCMDVFGASYNSTKISLRVLAT---NYYYGGADNPNATNVVF  381

Query  472  SGGQFDPWRTFSVLSDEDWAPQGVNFTTEIPACGVPTSKDAIFGYIMENAVHCPDFR  528
              G  DPW    +    D        ++ +P             Y++  A HC D  
Sbjct  382  VNGDLDPWHALGLGDSTD--------SSVVP-------------YLIPGAAHCADMY  417



Lambda      K        H        a         alpha
   0.319    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 699392304


Query= TCONS_00029693

Length=91
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462742 pfam09284, RhgB_N, Rhamnogalacturonan lyase B, N-termi...   99     4e-28


>CDD:462742 pfam09284, RhgB_N, Rhamnogalacturonan lyase B, N-terminal.  Members 
of this family are found in both fungi, bacteria and 
wood-eating arthropods. The domain is found at the N-terminus 
of rhamnogalacturonase B, a member of the polysaccharide lyase 
family 4. The domain adopts a structure consisting of a 
beta super-sandwich, with eighteen strands in two beta-sheets. 
The three domains of the whole protein rhamnogalacturonan 
lyase (RGL4), are involved in the degradation of rhamnogalacturonan-I, 
RG-I, an important pectic plant cell-wall polysaccharide. 
The active-site residues are a lysine at position 
169 in UniProtKB:Q00019 and a histidine at 229, Lys169 is likely 
to be a proton abstractor, His229 a proton donor in the 
mechanism. The substrate is a disaccharide, and RGL4, in contrast 
to other rhamnogalacturonan hydrolases, cleaves the 
alpha-1,4 linkages of RG-I between Rha and GalUA through a beta-elimination 
resulting in a double bond in the nonreducing 
GalUA residue, and is thus classified as a polysaccharide 
lyase (PL).
Length=249

 Score =  99 bits (250),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 2/63 (3%)

Query  24  ITTTSSSYVIDANSPNPLKFTVNRSNCDITSINFYGAELQYQGTGSHIGSGLGSASVSAT  83
            T + S+YV+D  S   L FTV++SN DITSI + G E QY   GSHI SGLGSA+V+  
Sbjct  1   YTDSGSNYVVDTGSG--LVFTVSKSNGDITSIKYNGTEYQYSSKGSHIESGLGSATVTIE  58

Query  84  QSG  86
             G
Sbjct  59  TIG  61



Lambda      K        H        a         alpha
   0.318    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00029694

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:310284 pfam05577, Peptidase_S28, Serine carboxypeptidase S28....  187     9e-55


>CDD:310284 pfam05577, Peptidase_S28, Serine carboxypeptidase S28.  These 
serine proteases include several eukaryotic enzymes such as 
lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, 
and thymus-specific serine peptidase.
Length=434

 Score = 187 bits (477),  Expect = 9e-55, Method: Composition-based stats.
 Identities = 117/477 (25%), Positives = 181/477 (38%), Gaps = 85/477 (18%)

Query  3    IDHEDPSV-GTYRNRFWVNEDFYISGSPIMVYDIGEATAEYSVSLLTNSSSWLSLLLQEF  61
            +DH DPS   T++ R++ N+  Y +G PI +   GE     S       +     L +EF
Sbjct  3    LDHFDPSNNRTFQQRYFYNDQHYRNGGPIFLMIGGEGPESAS----WVRNGHWLDLAKEF  58

Query  62   NAMGIVWEHRYYGGSLPYPVSQDMPVEHLKYLTTEQALADIPYFAANFSRLNHPDFDLTP  121
             A+    EHR+YG S P     D+  E+L+YL++ QALAD+  F    ++          
Sbjct  59   GALVFSLEHRFYGQSRPIG---DLSTENLRYLSSLQALADLASFIKAMNQ-KFNGLS---  111

Query  122  RGTPWIMIGGSYPGIRAAITRNKYPDTIFAAYASSAPVQAQLNMSVYYEQIYRAIVGNGY  181
              + WI  GGSY G  AA  R KYP  +  A ASSAP+ A+++   Y   +  ++   G 
Sbjct  112  -SSKWITFGGSYSGSLAAWFRKKYPHLVVGAVASSAPLLAKVDFKEYNMVVETSLRQTG-  169

Query  182  SNCTKDIQAALKYIDGQLSNKR-TFALIKRLFLGPDAEKNSNEDFTTALVTLYGPFQA--  238
              C   I+     ++  L  K    AL   L L P  ++ ++ D       +Y  FQ   
Sbjct  170  GECADAIEQGFAEVEQLLLTKEGRQALSSELQLCPPLDQTTDLDQLNFFSNIYSNFQGVV  229

Query  239  ------HGLWSGNQ-SLPDFCNYLELDPATNQSAGPEGLSPIHGSKYVAERWASFPYFIS  291
                   G  + N  ++PD C  +      N +     L                   I 
Sbjct  230  QYTYDGQGNSTLNGYTIPDMCKIM-----LNATTTDLIL--------------RVEVLI-  269

Query  292  LVNRMYGTNC----------NGLNASEPLSCDFSQTNTIPELISWTWQYCTEWGFFQSNN  341
             +                     NA      D S  +   +   WTWQ CTE+GF+Q+ +
Sbjct  270  QLFNYLNQKSGNNSTADISYQLANADY---GDSSYGSYADDR-QWTWQTCTEFGFYQTTD  325

Query  342  FGSHALLSSYQTLEYQQELCYRQFPNAVQAGVLPPRP-QTESLNEKFGGW-TIRPSNVYF  399
             G+     S   +    ++C   F  +  +  +  R   T   N  +GG      +NV F
Sbjct  326  SGNQ-PFGSPFPVTLYIDMCMDVFGASYNSTKISLRVLAT---NYYYGGADNPNATNVVF  381

Query  400  SGGQFDPWRTFSVLSDEDWAPQGVNFTTEIPACGVPTSKDAIFGYIMENAVHCPDFR  456
              G  DPW    +    D        ++ +P             Y++  A HC D  
Sbjct  382  VNGDLDPWHALGLGDSTD--------SSVVP-------------YLIPGAAHCADMY  417



Lambda      K        H        a         alpha
   0.319    0.135    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 601084202


Query= TCONS_00029696

Length=560
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:310284 pfam05577, Peptidase_S28, Serine carboxypeptidase S28....  190     3e-55


>CDD:310284 pfam05577, Peptidase_S28, Serine carboxypeptidase S28.  These 
serine proteases include several eukaryotic enzymes such as 
lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, 
and thymus-specific serine peptidase.
Length=434

 Score = 190 bits (485),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 117/477 (25%), Positives = 181/477 (38%), Gaps = 85/477 (18%)

Query  75   IDHEDPSV-GTYRNRFWVNEDFYISGSPIMVYDIGEATAEYSVSLLTNSSSWLSLLLQEF  133
            +DH DPS   T++ R++ N+  Y +G PI +   GE     S       +     L +EF
Sbjct  3    LDHFDPSNNRTFQQRYFYNDQHYRNGGPIFLMIGGEGPESAS----WVRNGHWLDLAKEF  58

Query  134  NAMGIVWEHRYYGGSLPYPVSQDMPVEHLKYLTTEQALADIPYFAANFSRLNHPDFDLTP  193
             A+    EHR+YG S P     D+  E+L+YL++ QALAD+  F    ++          
Sbjct  59   GALVFSLEHRFYGQSRPIG---DLSTENLRYLSSLQALADLASFIKAMNQ-KFNGLS---  111

Query  194  RGTPWIMIGGSYPGIRAAITRNKYPDTIFAAYASSAPVQAQLNMSVYYEQIYRAIVGNGY  253
              + WI  GGSY G  AA  R KYP  +  A ASSAP+ A+++   Y   +  ++   G 
Sbjct  112  -SSKWITFGGSYSGSLAAWFRKKYPHLVVGAVASSAPLLAKVDFKEYNMVVETSLRQTG-  169

Query  254  SNCTKDIQAALKYIDGQLSNKR-TFALIKRLFLGPDAEKNSNEDFTTALVTLYGPFQA--  310
              C   I+     ++  L  K    AL   L L P  ++ ++ D       +Y  FQ   
Sbjct  170  GECADAIEQGFAEVEQLLLTKEGRQALSSELQLCPPLDQTTDLDQLNFFSNIYSNFQGVV  229

Query  311  ------HGLWSGNQ-SLPDFCNYLELDPATNQSAGPEGLSPIHGSKYVAERWASFPYFIS  363
                   G  + N  ++PD C  +      N +     L                   I 
Sbjct  230  QYTYDGQGNSTLNGYTIPDMCKIM-----LNATTTDLIL--------------RVEVLI-  269

Query  364  LVNRMYGTNC----------NGLNASEPLSCDFSQTNTIPELISWTWQYCTEWGFFQSNN  413
             +                     NA      D S  +   +   WTWQ CTE+GF+Q+ +
Sbjct  270  QLFNYLNQKSGNNSTADISYQLANADY---GDSSYGSYADDR-QWTWQTCTEFGFYQTTD  325

Query  414  FGSHALLSSYQTLEYQQELCYRQFPNAVQAGVLPPRP-QTESLNEKFGGW-TIRPSNVYF  471
             G+     S   +    ++C   F  +  +  +  R   T   N  +GG      +NV F
Sbjct  326  SGNQ-PFGSPFPVTLYIDMCMDVFGASYNSTKISLRVLAT---NYYYGGADNPNATNVVF  381

Query  472  SGGQFDPWRTFSVLSDEDWAPQGVNFTTEIPACGVPTSKDAIFGYIMENAVHCPDFR  528
              G  DPW    +    D        ++ +P             Y++  A HC D  
Sbjct  382  VNGDLDPWHALGLGDSTD--------SSVVP-------------YLIPGAAHCADMY  417



Lambda      K        H        a         alpha
   0.319    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 699392304


Query= TCONS_00029697

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:310284 pfam05577, Peptidase_S28, Serine carboxypeptidase S28....  142     9e-39


>CDD:310284 pfam05577, Peptidase_S28, Serine carboxypeptidase S28.  These 
serine proteases include several eukaryotic enzymes such as 
lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, 
and thymus-specific serine peptidase.
Length=434

 Score = 142 bits (360),  Expect = 9e-39, Method: Composition-based stats.
 Identities = 90/394 (23%), Positives = 142/394 (36%), Gaps = 77/394 (20%)

Query  1    MPVEHLKYLTTEQALADIPYFAANFSRLNHPDFDLTPRGTPWIMIGGSYPGIRAAITRNK  60
            +  E+L+YL++ QALAD+  F    ++            + WI  GGSY G  AA  R K
Sbjct  79   LSTENLRYLSSLQALADLASFIKAMNQ-KFNGLS----SSKWITFGGSYSGSLAAWFRKK  133

Query  61   YPDTIFAAYASSAPVQAQLNMSVYYEQIYRAIVGNGYSNCTKDIQAALKYIDGQLSNKR-  119
            YP  +  A ASSAP+ A+++   Y   +  ++   G   C   I+     ++  L  K  
Sbjct  134  YPHLVVGAVASSAPLLAKVDFKEYNMVVETSLRQTG-GECADAIEQGFAEVEQLLLTKEG  192

Query  120  TFALIKRLFLGPDAEKNSNEDFTTALVTLYGPFQA--------HGLWSGNQ-SLPDFCNY  170
              AL   L L P  ++ ++ D       +Y  FQ          G  + N  ++PD C  
Sbjct  193  RQALSSELQLCPPLDQTTDLDQLNFFSNIYSNFQGVVQYTYDGQGNSTLNGYTIPDMCKI  252

Query  171  LELDPATNQSAGPEGLSPIHGSKYVAERWASFPYFISLVNRMYGTNC----------NGL  220
            +      N +     L                   I  +                     
Sbjct  253  M-----LNATTTDLIL--------------RVEVLI-QLFNYLNQKSGNNSTADISYQLA  292

Query  221  NASEPLSCDFSQTNTIPELISWTWQYCTEWGFFQSNNFGSHALLSSYQTLEYQQELCYRQ  280
            NA      D S  +   +   WTWQ CTE+GF+Q+ + G+     S   +    ++C   
Sbjct  293  NADY---GDSSYGSYADDR-QWTWQTCTEFGFYQTTDSGNQ-PFGSPFPVTLYIDMCMDV  347

Query  281  FPNAVQAGVLPPRP-QTESLNEKFGGW-TIRPSNVYFSGGQFDPWRTFSVLSDEDWAPQG  338
            F  +  +  +  R   T   N  +GG      +NV F  G  DPW    +    D     
Sbjct  348  FGASYNSTKISLRVLAT---NYYYGGADNPNATNVVFVNGDLDPWHALGLGDSTD-----  399

Query  339  VNFTTEIPACGVPTSKDAIFGYIMENAVHCPDFR  372
               ++ +P             Y++  A HC D  
Sbjct  400  ---SSVVP-------------YLIPGAAHCADMY  417



Lambda      K        H        a         alpha
   0.320    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00034538

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:310284 pfam05577, Peptidase_S28, Serine carboxypeptidase S28....  184     3e-53


>CDD:310284 pfam05577, Peptidase_S28, Serine carboxypeptidase S28.  These 
serine proteases include several eukaryotic enzymes such as 
lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, 
and thymus-specific serine peptidase.
Length=434

 Score = 184 bits (470),  Expect = 3e-53, Method: Composition-based stats.
 Identities = 115/473 (24%), Positives = 178/473 (38%), Gaps = 85/473 (18%)

Query  73   DPSV-GTYRNRFWVNEDFYISGSPIMVYDIGEATAEYSVSLLTNSSSWLSLLLQEFNAMG  131
            DPS   T++ R++ N+  Y +G PI +   GE     S       +     L +EF A+ 
Sbjct  7    DPSNNRTFQQRYFYNDQHYRNGGPIFLMIGGEGPESAS----WVRNGHWLDLAKEFGALV  62

Query  132  IVWEHRYYGGSLPYPVSQDMPVEHLKYLTTEQALADIPYFAANFSRLNHPDFDLTPRGTP  191
               EHR+YG S P     D+  E+L+YL++ QALAD+  F    ++            + 
Sbjct  63   FSLEHRFYGQSRPIG---DLSTENLRYLSSLQALADLASFIKAMNQ-KFNGLS----SSK  114

Query  192  WIMIGGSYPGIRAAITRNKYPDTIFAAYASSAPVQAQLNMSVYYEQIYRAIVGNGYSNCT  251
            WI  GGSY G  AA  R KYP  +  A ASSAP+ A+++   Y   +  ++   G   C 
Sbjct  115  WITFGGSYSGSLAAWFRKKYPHLVVGAVASSAPLLAKVDFKEYNMVVETSLRQTG-GECA  173

Query  252  KDIQAALKYIDGQLSNKR-TFALIKRLFLGPDAEKNSNEDFTTALVTLYGPFQA------  304
              I+     ++  L  K    AL   L L P  ++ ++ D       +Y  FQ       
Sbjct  174  DAIEQGFAEVEQLLLTKEGRQALSSELQLCPPLDQTTDLDQLNFFSNIYSNFQGVVQYTY  233

Query  305  --HGLWSGNQ-SLPDFCNYLELDPATNQSAGPEGLSPIHGSKYVAERWASFPYFISLVNR  361
               G  + N  ++PD C  +      N +     L                   I  +  
Sbjct  234  DGQGNSTLNGYTIPDMCKIM-----LNATTTDLIL--------------RVEVLI-QLFN  273

Query  362  MYGTNC----------NGLNASEPLSCDFSQTNTIPELISWTWQYCTEWGFFQSNNFGSH  411
                               NA      D S  +   +   WTWQ CTE+GF+Q+ + G+ 
Sbjct  274  YLNQKSGNNSTADISYQLANADY---GDSSYGSYADDR-QWTWQTCTEFGFYQTTDSGNQ  329

Query  412  ALLSSYQTLEYQQELCYRQFPNAVQAGVLPPRP-QTESLNEKFGGW-TIRPSNVYFSGGQ  469
                S   +    ++C   F  +  +  +  R   T   N  +GG      +NV F  G 
Sbjct  330  -PFGSPFPVTLYIDMCMDVFGASYNSTKISLRVLAT---NYYYGGADNPNATNVVFVNGD  385

Query  470  FDPWRTFSVLSDEDWAPQGVNFTTEIPACGVPTSKDAIFGYIMENAVHCPDFR  522
             DPW    +    D        ++ +P             Y++  A HC D  
Sbjct  386  LDPWHALGLGDSTD--------SSVVP-------------YLIPGAAHCADMY  417



Lambda      K        H        a         alpha
   0.319    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690425736


Query= TCONS_00034537

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:310284 pfam05577, Peptidase_S28, Serine carboxypeptidase S28....  142     9e-39


>CDD:310284 pfam05577, Peptidase_S28, Serine carboxypeptidase S28.  These 
serine proteases include several eukaryotic enzymes such as 
lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, 
and thymus-specific serine peptidase.
Length=434

 Score = 142 bits (360),  Expect = 9e-39, Method: Composition-based stats.
 Identities = 90/394 (23%), Positives = 142/394 (36%), Gaps = 77/394 (20%)

Query  1    MPVEHLKYLTTEQALADIPYFAANFSRLNHPDFDLTPRGTPWIMIGGSYPGIRAAITRNK  60
            +  E+L+YL++ QALAD+  F    ++            + WI  GGSY G  AA  R K
Sbjct  79   LSTENLRYLSSLQALADLASFIKAMNQ-KFNGLS----SSKWITFGGSYSGSLAAWFRKK  133

Query  61   YPDTIFAAYASSAPVQAQLNMSVYYEQIYRAIVGNGYSNCTKDIQAALKYIDGQLSNKR-  119
            YP  +  A ASSAP+ A+++   Y   +  ++   G   C   I+     ++  L  K  
Sbjct  134  YPHLVVGAVASSAPLLAKVDFKEYNMVVETSLRQTG-GECADAIEQGFAEVEQLLLTKEG  192

Query  120  TFALIKRLFLGPDAEKNSNEDFTTALVTLYGPFQA--------HGLWSGNQ-SLPDFCNY  170
              AL   L L P  ++ ++ D       +Y  FQ          G  + N  ++PD C  
Sbjct  193  RQALSSELQLCPPLDQTTDLDQLNFFSNIYSNFQGVVQYTYDGQGNSTLNGYTIPDMCKI  252

Query  171  LELDPATNQSAGPEGLSPIHGSKYVAERWASFPYFISLVNRMYGTNC----------NGL  220
            +      N +     L                   I  +                     
Sbjct  253  M-----LNATTTDLIL--------------RVEVLI-QLFNYLNQKSGNNSTADISYQLA  292

Query  221  NASEPLSCDFSQTNTIPELISWTWQYCTEWGFFQSNNFGSHALLSSYQTLEYQQELCYRQ  280
            NA      D S  +   +   WTWQ CTE+GF+Q+ + G+     S   +    ++C   
Sbjct  293  NADY---GDSSYGSYADDR-QWTWQTCTEFGFYQTTDSGNQ-PFGSPFPVTLYIDMCMDV  347

Query  281  FPNAVQAGVLPPRP-QTESLNEKFGGW-TIRPSNVYFSGGQFDPWRTFSVLSDEDWAPQG  338
            F  +  +  +  R   T   N  +GG      +NV F  G  DPW    +    D     
Sbjct  348  FGASYNSTKISLRVLAT---NYYYGGADNPNATNVVFVNGDLDPWHALGLGDSTD-----  399

Query  339  VNFTTEIPACGVPTSKDAIFGYIMENAVHCPDFR  372
               ++ +P             Y++  A HC D  
Sbjct  400  ---SSVVP-------------YLIPGAAHCADMY  417



Lambda      K        H        a         alpha
   0.320    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00034539

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:310284 pfam05577, Peptidase_S28, Serine carboxypeptidase S28....  142     9e-39


>CDD:310284 pfam05577, Peptidase_S28, Serine carboxypeptidase S28.  These 
serine proteases include several eukaryotic enzymes such as 
lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, 
and thymus-specific serine peptidase.
Length=434

 Score = 142 bits (360),  Expect = 9e-39, Method: Composition-based stats.
 Identities = 90/394 (23%), Positives = 142/394 (36%), Gaps = 77/394 (20%)

Query  1    MPVEHLKYLTTEQALADIPYFAANFSRLNHPDFDLTPRGTPWIMIGGSYPGIRAAITRNK  60
            +  E+L+YL++ QALAD+  F    ++            + WI  GGSY G  AA  R K
Sbjct  79   LSTENLRYLSSLQALADLASFIKAMNQ-KFNGLS----SSKWITFGGSYSGSLAAWFRKK  133

Query  61   YPDTIFAAYASSAPVQAQLNMSVYYEQIYRAIVGNGYSNCTKDIQAALKYIDGQLSNKR-  119
            YP  +  A ASSAP+ A+++   Y   +  ++   G   C   I+     ++  L  K  
Sbjct  134  YPHLVVGAVASSAPLLAKVDFKEYNMVVETSLRQTG-GECADAIEQGFAEVEQLLLTKEG  192

Query  120  TFALIKRLFLGPDAEKNSNEDFTTALVTLYGPFQA--------HGLWSGNQ-SLPDFCNY  170
              AL   L L P  ++ ++ D       +Y  FQ          G  + N  ++PD C  
Sbjct  193  RQALSSELQLCPPLDQTTDLDQLNFFSNIYSNFQGVVQYTYDGQGNSTLNGYTIPDMCKI  252

Query  171  LELDPATNQSAGPEGLSPIHGSKYVAERWASFPYFISLVNRMYGTNC----------NGL  220
            +      N +     L                   I  +                     
Sbjct  253  M-----LNATTTDLIL--------------RVEVLI-QLFNYLNQKSGNNSTADISYQLA  292

Query  221  NASEPLSCDFSQTNTIPELISWTWQYCTEWGFFQSNNFGSHALLSSYQTLEYQQELCYRQ  280
            NA      D S  +   +   WTWQ CTE+GF+Q+ + G+     S   +    ++C   
Sbjct  293  NADY---GDSSYGSYADDR-QWTWQTCTEFGFYQTTDSGNQ-PFGSPFPVTLYIDMCMDV  347

Query  281  FPNAVQAGVLPPRP-QTESLNEKFGGW-TIRPSNVYFSGGQFDPWRTFSVLSDEDWAPQG  338
            F  +  +  +  R   T   N  +GG      +NV F  G  DPW    +    D     
Sbjct  348  FGASYNSTKISLRVLAT---NYYYGGADNPNATNVVFVNGDLDPWHALGLGDSTD-----  399

Query  339  VNFTTEIPACGVPTSKDAIFGYIMENAVHCPDFR  372
               ++ +P             Y++  A HC D  
Sbjct  400  ---SSVVP-------------YLIPGAAHCADMY  417



Lambda      K        H        a         alpha
   0.320    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00034540

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  76.5    2e-16


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 76.5 bits (189),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 92/214 (43%), Gaps = 34/214 (16%)

Query  16   GSAFDIQRLFFLLTIDSATHFLFGESVGSLHAGTDTGLLGRSAVGNAEGFAEAFNKAQEY  75
                DI  L F   ++     LFGE  GSL    D                +A  +    
Sbjct  136  PGVIDITDLLFRAALNVICSILFGERFGSL---ED---------PKFLELVKAVQELSSL  183

Query  76   LAARSRAVVFY-----WMINP--KEFRDANKRVHEVVDHYVQLALESRRNPEKKQPGGRY  128
            L++ S  ++       +   P  ++ + A K++ +++D  ++   E+  + +K       
Sbjct  184  LSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKS----PR  239

Query  129  IFAEAL--AAENDNPKVLRD-----NMLNILLAGRDTTASLLSSTFFYLARHPNVWIKLR  181
             F +AL  A E ++   L D      +L +  AG DTT+S LS   + LA+HP V  KLR
Sbjct  240  DFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLR  299

Query  182  QVIVDAFGDAEHPKEEITQTKLKDIPYLRYVLNE  215
            + I +  GD    K   T   L+++PYL  V+ E
Sbjct  300  EEIDEVIGD----KRSPTYDDLQNMPYLDAVIKE  329



Lambda      K        H        a         alpha
   0.320    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00029698

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  157     5e-44


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 157 bits (398),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 107/337 (32%), Positives = 155/337 (46%), Gaps = 36/337 (11%)

Query  44   EAGFLGIASFL--RLRKAAKEKRWIELIAEQYGKYG-NTFTQTIFGQPLVSTIEPENLKA  100
            E      A  L  +LRK A E   I+ I +   +   N     +FG+   S  +P+ L+ 
Sbjct  115  EPRVEEEARDLVEKLRKTAGEPGVID-ITDLLFRAALNVICSILFGERFGSLEDPKFLEL  173

Query  101  LLATQ-FNDFELGTRHR--EFYPLLGDGIFTLDGAGWSHARALLRPQFTRDQLALESRRN  157
            + A Q  +        +  + +P+L        G     AR  ++         +E RR 
Sbjct  174  VKAVQELSSLLSSPSPQLLDLFPIL-KYFPGPHGRKLKRARKKIK-DLLDK--LIEERRE  229

Query  158  PEKKQPGGRYIFAEAL--AAENDNPKVLRD-----NMLNILLAGRDTTASLLSSTFFYLA  210
                       F +AL  A E ++   L D      +L +  AG DTT+S LS   + LA
Sbjct  230  TLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELA  289

Query  211  RHPNVWIKLRQVIVDAFGDAEHPKEEITQTKLKDIPYLRYVLNEVLRLLPPVPAN-FRVA  269
            +HP V  KLR+ I +  GD    K   T   L+++PYL  V+ E LRL P VP    R  
Sbjct  290  KHPEVQEKLREEIDEVIGD----KRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREV  345

Query  270  NKDTTLPVGGGPDQKSPVYIRKGTIVTYSVYAMHRRTDFYGPDANEFRPERW-EENGKRG  328
             KDT +P G          I KGT+V  ++YA+HR  + + P+  EF PER+ +ENGK  
Sbjct  346  TKDTVIP-G--------YLIPKGTLVIVNLYALHRDPEVF-PNPEEFDPERFLDENGKFR  395

Query  329  --WEYLPFNGGPRICLGQQYALTEASFTIVKLLQRFD  363
              + +LPF  GPR CLG++ A  E    +  LLQ F+
Sbjct  396  KSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFE  432



Lambda      K        H        a         alpha
   0.322    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 481536020


Query= TCONS_00034541

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  174     7e-50


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 174 bits (443),  Expect = 7e-50, Method: Composition-based stats.
 Identities = 122/419 (29%), Positives = 184/419 (44%), Gaps = 70/419 (17%)

Query  75   KYGNTFTQTIFGQPLVSTIEPENLKALLATQFNDF-----ELGTRHREFYPLLGDGIFTL  129
            KYG  F   +  +P+V    PE +K +L  +  +F     E          L G GI   
Sbjct  32   KYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFL-GKGIVFA  90

Query  130  DGAGWSHARALLRPQFT----------RDQVADLDLMDGHVSRLIDLVPKDGSAFDIQRL  179
            +G  W   R  L P FT           ++ A  DL++      +     +    DI  L
Sbjct  91   NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEAR-DLVE-----KLRKTAGEPGVIDITDL  144

Query  180  FFLLTIDSATHFLFGESVGSLHAGTDTGLLGRSAVGNAEGFAEAFNKAQEYLAARSRAVV  239
             F   ++     LFGE  GSL    D                +A  +    L++ S  ++
Sbjct  145  LFRAALNVICSILFGERFGSL---ED---------PKFLELVKAVQELSSLLSSPSPQLL  192

Query  240  FY-----WMINP--KEFRDANKRVHEVVDHYVQLALESRRNPEKKQPGGRYIFAEAL--A  290
                   +   P  ++ + A K++ +++D  ++   E+  + +K        F +AL  A
Sbjct  193  DLFPILKYFPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKS----PRDFLDALLLA  248

Query  291  AENDNPKVLRD-----NMLNILLAGRDTTASLLSSTFFYLARHPNVWIKLRQVIVDAFGD  345
             E ++   L D      +L +  AG DTT+S LS   + LA+HP V  KLR+ I +  GD
Sbjct  249  KEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGD  308

Query  346  AEHPKEEITQTKLKDIPYLRYVLNEVLRLLPPVPAN-FRVANKDTTLPVGGGPDQKSPVY  404
                K   T   L+++PYL  V+ E LRL P VP    R   KDT +P G          
Sbjct  309  ----KRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIP-G--------YL  355

Query  405  IRKGTIVTYSVYAMHRRTDFYGPDANEFRPERW-EENGKRG--WEYLPFNGGPRICLGR  460
            I KGT+V  ++YA+HR  + + P+  EF PER+ +ENGK    + +LPF  GPR CLG 
Sbjct  356  IPKGTLVIVNLYALHRDPEVF-PNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGE  413



Lambda      K        H        a         alpha
   0.322    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00029700

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463298 pfam11571, Med27, Mediator complex subunit 27. Mediato...  118     4e-34


>CDD:463298 pfam11571, Med27, Mediator complex subunit 27.  Mediator is a 
large complex of up to 33 proteins that is conserved from plants 
to fungi to humans - the number and representation of 
individual subunits varying with species {1-2]. It is arranged 
into four different sections, a core, a head, a tail and 
a kinase-activity part, and the number of subunits within each 
of these is what varies with species. Overall, Mediator regulates 
the transcriptional activity of RNA polymerase II but 
it would appear that each of the four different sections 
has a slightly different function. Mediator exists in two major 
forms in human cells: a smaller form that interacts strongly 
with pol II and activates transcription, and a large form 
that does not interact strongly with pol II and does not 
directly activate transcription. The ubiquitous expression of 
Med27 mRNA suggests a universal requirement for Med27 in transcriptional 
initiation. Loss of Crsp34/Med27 decreases amacrine 
cell number, but increases the number of rod photoreceptor 
cells.
Length=85

 Score = 118 bits (299),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 35/93 (38%), Positives = 45/93 (48%), Gaps = 8/93 (9%)

Query  242  MVDWRVQELAAPGRPKTKLETAVAACLNARPRQWDLAYLLDMIASYSDVKQTPCVKCGKM  301
            +  W         +      TA+   LN+RP Q DL   LD I+SYS++  TPC KCGK+
Sbjct  1    VDLWSPSRYKVFRKLTEHANTAILHFLNSRPPQLDLKSFLDWISSYSNLFSTPCKKCGKL  60

Query  302  TDNAAQLPSVRRPNPLQSSQGQPVLWEAYHPTC  334
             D+ + LP VRR             WEAYH  C
Sbjct  61   LDSDSFLPPVRRDFRST--------WEAYHEEC  85



Lambda      K        H        a         alpha
   0.315    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00034543

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00029702

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00029701

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00029703

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00029704

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00029705

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00029706

Length=878
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  128     3e-34
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            89.1    4e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 128 bits (324),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 116/336 (35%), Gaps = 123/336 (37%)

Query  329  YLILDVLGQGTFGQVVKCQNLKTQEVVAVKVIKNKTA---YFNQSMMEVSVLDLLNSKYD  385
            Y +L  LG G+FG V K ++  T ++VA+K IK +          + E+ +L  LN    
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHP--  58

Query  386  KNDDHHLLRLKDTFIHRQHLCLVFELLS-VNLYELIKQNQFRGLSTTLVRVFAQQLLNAL  444
                 +++RL D F  + +L LV E +   +L++L+ +      S    +   +Q+L  L
Sbjct  59   -----NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEK--GAFSEREAKFIMKQILEGL  111

Query  445  SLLNKAHLIHCDLKPENILLKNLESPIIKVIDFGSACDERQTVYTYIQSRFYRSPEVLLG  504
                                                 +   ++ T++ + +Y +PEVL G
Sbjct  112  -------------------------------------ESGSSLTTFVGTPWYMAPEVLGG  134

Query  505  LPYSSAIDMWSLGCIVVELFLGLPLFPGSSEYNQVCRIVEMLGLPPTWMLEMGKQSGEFF  564
             PY   +D+WSLGCI+ EL  G P FPG +       I+                     
Sbjct  135  NPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII---------------------  173

Query  565  EKTQDEFGRKTYRLKSLEQYSREHNTKEQPSKKYFQASTLEEIIRSYPMPRKNMKQAEIE  624
                                       +QP       S L E                  
Sbjct  174  ---------------------------DQPYAFPELPSNLSE------------------  188

Query  625  RELNNRVAFIDFVRGLLSINPLERWSPQQAKLHPFI  660
                      D ++ LL  +P +R +  QA  HP+ 
Sbjct  189  -------EAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 89.1 bits (222),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 27/217 (12%)

Query  331  ILDVLGQGTFGQVVKC----QNLKTQEVVAVKVIKNKT-AYFNQSMM-EVSVLDLLNSKY  384
            + + LG+G FG+V K     +   T+  VAVK +K        +  + E S++     K 
Sbjct  3    LGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIM----KKL  58

Query  385  DKNDDH-HLLRLKDTFIHRQHLCLVFELLS-VNLYELIKQNQFRGLST-TLVRVFAQQLL  441
            D    H ++++L       + L +V E +   +L + +++++ R L+   L+   A Q+ 
Sbjct  59   D----HPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHK-RKLTLKDLLS-MALQIA  112

Query  442  NALSLLNKAHLIHCDLKPENILLKNLESPIIKVIDFGSACDERQTVYTYIQSR-----FY  496
              +  L   + +H DL   N L+   E+ ++K+ DFG + D     Y   +        +
Sbjct  113  KGMEYLESKNFVHRDLAARNCLVS--ENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  497  RSPEVLLGLPYSSAIDMWSLGCIVVELF-LGLPLFPG  532
             +PE L    ++S  D+WS G ++ E+F LG   +PG
Sbjct  171  MAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPG  207



Lambda      K        H        a         alpha
   0.315    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1124007462


Query= TCONS_00029707

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  90.0    4e-21
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            62.9    1e-11


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 90.0 bits (224),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 93/291 (32%), Gaps = 120/291 (41%)

Query  1    MMEVSVLDLLNSKYDKNDDHHLLRLKDTFIHRQHLCLVFELLS-VNLYELIKQNQFRGLS  59
            + E+ +L  LN         +++RL D F  + +L LV E +   +L++L+ +      S
Sbjct  46   LREIKILKKLNHP-------NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEK--GAFS  96

Query  60   TTLVRVFAQQLLNALSLLNKAHLIHCDLKPENILLKNLESPIIKVIDFGSACDERQTVYT  119
                +   +Q+L  L                                     +   ++ T
Sbjct  97   EREAKFIMKQILEGL-------------------------------------ESGSSLTT  119

Query  120  YIQSRFYRSPEVLLGLPYSSAIDMWSLGCIVVELFLGLPLFPGSSEYNQVCRIVEMLGLP  179
            ++ + +Y +PEVL G PY   +D+WSLGCI+ EL  G P FPG +       I+      
Sbjct  120  FVGTPWYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII------  173

Query  180  PTWMLEMGKQSGEFFEKTQDEFGRKTYRLKSLEQYSREHNTKEQPSKKYFQASTLEEIIR  239
                                                      +QP       S L E   
Sbjct  174  ------------------------------------------DQPYAFPELPSNLSE---  188

Query  240  SYPMPRKNMKQAEIERELNNRVAFIDFVRGLLSINPLERWSPQQAKLHPFI  290
                                     D ++ LL  +P +R +  QA  HP+ 
Sbjct  189  ----------------------EAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 62.9 bits (154),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 42/171 (25%), Positives = 81/171 (47%), Gaps = 21/171 (12%)

Query  1    MMEVSVLDLLNSKYDKNDDH-HLLRLKDTFIHRQHLCLVFELLS-VNLYELIKQNQFRGL  58
            + E S++     K D    H ++++L       + L +V E +   +L + +++++ R L
Sbjct  49   LEEASIM----KKLD----HPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHK-RKL  99

Query  59   ST-TLVRVFAQQLLNALSLLNKAHLIHCDLKPENILLKNLESPIIKVIDFGSACDERQTV  117
            +   L+   A Q+   +  L   + +H DL   N L+   E+ ++K+ DFG + D     
Sbjct  100  TLKDLLS-MALQIAKGMEYLESKNFVHRDLAARNCLVS--ENLVVKISDFGLSRDIYDDD  156

Query  118  YTYIQSR-----FYRSPEVLLGLPYSSAIDMWSLGCIVVELF-LGLPLFPG  162
            Y   +        + +PE L    ++S  D+WS G ++ E+F LG   +PG
Sbjct  157  YYRKRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPG  207



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00029708

Length=366


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00034544

Length=862
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428482 pfam05470, eIF-3c_N, Eukaryotic translation initiation...  582     0.0  


>CDD:428482 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 
3 subunit 8 N-terminus.  The largest of the mammalian translation 
initiation factors, eIF3, consists of at least eight 
subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 
40 S ribosome in an early step of translation initiation 
and promotes the binding of methionyl-tRNAi and mRNA.
Length=593

 Score = 582 bits (1503),  Expect = 0.0, Method: Composition-based stats.
 Identities = 251/601 (42%), Positives = 360/601 (60%), Gaps = 39/601 (6%)

Query  59   KFLKDVASDSEEEEEEEKVTVVKSAKDKRLDELENTIKLIENAKKINDWAVISTEFDKLN  118
            KFL+D +SD   +EE+ K  VVKSAKDKR +E+ + IK I NA KINDW  +  EFD LN
Sbjct  1    KFLRDDSSDESSDEEDTK-RVVKSAKDKRFEEMTSIIKTIRNAMKINDWVTLLEEFDLLN  59

Query  119  RQVAK---ITQSGPTPKIYIKAVADLEDFVNETVAKQKSGDKKLNASQAKGFNAAKQRIK  175
            +   K   + ++  TP+ YIK +A+LEDF+NE     K G KKL+ + AK  N  +Q++K
Sbjct  60   KAYQKAKTVQENVGTPRFYIKTLAELEDFLNELWD-DKEGKKKLSKNNAKALNTLRQKVK  118

Query  176  KNNKDYGNLIDKYRKDKEDFMESDDEEAIP--------------VIAAPRITKL--ERIE  219
            K N+ + + I +YR+D E   + + E+                 V+A   +      R+ 
Sbjct  119  KYNRQFEDDITRYREDPEQEDKEEPEDEDDDDDGDDISDEDEDGVVATRGVVAPTESRVI  178

Query  220  APAAAIDDDGFATVGRGGKTL---------QYTPESILKHLRVIVESRGKKNTDRMEQIR  270
                A ++D  A   +              + T   + K L  I+ +RGKK TDR EQI 
Sbjct  179  RVKEADEEDEDADWTKVNVEEKPKMFQKPEEITHADVFKKLNEIMSARGKKTTDRSEQID  238

Query  271  TMEKLLEVAQTPYQRIRVYLTLISTRFDLTSTSSANYMAVDQWKSAEQDFSSLLSVLENN  330
             +E+LL +A+TPY ++++   +IS RFD  +   + YM +DQWK    + +SLL +L+ N
Sbjct  239  LLEELLTIAETPYLKVKIKFNIISARFDY-NAGLSGYMPIDQWKKCLNNMNSLLDILDAN  297

Query  331  RDHVVFEG-AEEWEDDEKQPTIAPGETLYIPGSIVSFAERLDDELTRSLQHIDPHTAEYI  389
             + VV E  A+E E+ E +        + + GSI++F ERLDDE T+SLQ+IDPH+ +Y+
Sbjct  298  PNIVVVEEVADEVEELEDETPEDADGVIRVQGSILAFVERLDDEFTKSLQNIDPHSNDYV  357

Query  390  ERLSDEKLLYTDLVRAQAYVEGLNEVEKTDPRQDSVNRVVMRRLEHVYFKPSQVITILED  449
            ERL DE  +Y  + R Q Y E   + E       +V RV +RR+EH+Y+KP +VI   E 
Sbjct  358  ERLKDEPSVYALIERVQDYFERTGDSE-------AVCRVYLRRIEHIYYKPQEVIDTEEW  410

Query  450  ATWKSLPSELDSSITPRASSGNVENLVLSLCNYLFKYSDGIIRARAMLCQIYFLALHDQY  509
                S     ++     A++   + L+  LC Y++K     +R RAMLC IY  ALHD +
Sbjct  411  NIIPSFIVSKETVPRKPATAETSDALMDGLCKYIYKDGTDRLRTRAMLCHIYHHALHDNF  470

Query  510  YRSRDLMLMSHLTENISNFDVSTQILFNRTLVQIGLCAFRSGLIYEAQNTLSEVCGSGRQ  569
            Y +RDL+LMSHL +NI + D+STQILFNRT+VQ+GLCAFR G+I EA   LS++  +GR 
Sbjct  471  YTARDLLLMSHLQDNIQHADISTQILFNRTMVQLGLCAFRQGMIKEAHQCLSDLQSTGRV  530

Query  570  KELLAQGIIMQRYSTVSPEQERLERQRQLPFHMHINLELLECIYLTSSMFLEVPLMAQTS  629
            KELL QG++ +R    + EQE++ER+RQLP+HMHINLELLEC+YLT +M LE+P MA   
Sbjct  531  KELLGQGVLQRRQHEKTAEQEKIERRRQLPYHMHINLELLECVYLTCAMLLEIPYMAAHE  590

Query  630  S  630
            S
Sbjct  591  S  591



Lambda      K        H        a         alpha
   0.313    0.130    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1101039238


Query= TCONS_00029709

Length=894
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  128     4e-34
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            89.1    4e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 128 bits (324),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 116/336 (35%), Gaps = 123/336 (37%)

Query  345  YLILDVLGQGTFGQVVKCQNLKTQEVVAVKVIKNKTA---YFNQSMMEVSVLDLLNSKYD  401
            Y +L  LG G+FG V K ++  T ++VA+K IK +          + E+ +L  LN    
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHP--  58

Query  402  KNDDHHLLRLKDTFIHRQHLCLVFELLS-VNLYELIKQNQFRGLSTTLVRVFAQQLLNAL  460
                 +++RL D F  + +L LV E +   +L++L+ +      S    +   +Q+L  L
Sbjct  59   -----NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEK--GAFSEREAKFIMKQILEGL  111

Query  461  SLLNKAHLIHCDLKPENILLKNLESPIIKVIDFGSACDERQTVYTYIQSRFYRSPEVLLG  520
                                                 +   ++ T++ + +Y +PEVL G
Sbjct  112  -------------------------------------ESGSSLTTFVGTPWYMAPEVLGG  134

Query  521  LPYSSAIDMWSLGCIVVELFLGLPLFPGSSEYNQVCRIVEMLGLPPTWMLEMGKQSGEFF  580
             PY   +D+WSLGCI+ EL  G P FPG +       I+                     
Sbjct  135  NPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII---------------------  173

Query  581  EKTQDEFGRKTYRLKSLEQYSREHNTKEQPSKKYFQASTLEEIIRSYPMPRKNMKQAEIE  640
                                       +QP       S L E                  
Sbjct  174  ---------------------------DQPYAFPELPSNLSE------------------  188

Query  641  RELNNRVAFIDFVRGLLSINPLERWSPQQAKLHPFI  676
                      D ++ LL  +P +R +  QA  HP+ 
Sbjct  189  -------EAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 89.1 bits (222),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 27/217 (12%)

Query  347  ILDVLGQGTFGQVVKC----QNLKTQEVVAVKVIKNKT-AYFNQSMM-EVSVLDLLNSKY  400
            + + LG+G FG+V K     +   T+  VAVK +K        +  + E S++     K 
Sbjct  3    LGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIM----KKL  58

Query  401  DKNDDH-HLLRLKDTFIHRQHLCLVFELLS-VNLYELIKQNQFRGLST-TLVRVFAQQLL  457
            D    H ++++L       + L +V E +   +L + +++++ R L+   L+   A Q+ 
Sbjct  59   D----HPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHK-RKLTLKDLLS-MALQIA  112

Query  458  NALSLLNKAHLIHCDLKPENILLKNLESPIIKVIDFGSACDERQTVYTYIQSR-----FY  512
              +  L   + +H DL   N L+   E+ ++K+ DFG + D     Y   +        +
Sbjct  113  KGMEYLESKNFVHRDLAARNCLVS--ENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  513  RSPEVLLGLPYSSAIDMWSLGCIVVELF-LGLPLFPG  548
             +PE L    ++S  D+WS G ++ E+F LG   +PG
Sbjct  171  MAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPG  207



Lambda      K        H        a         alpha
   0.315    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1146975686


Query= TCONS_00034545

Length=665
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  126     1e-33
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            89.1    2e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 126 bits (319),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 97/232 (42%), Gaps = 54/232 (23%)

Query  329  YLILDVLGQGTFGQVVKCQNLKTQEVVAVKVIKNKTA---YFNQSMMEVSVLDLLNSKYD  385
            Y +L  LG G+FG V K ++  T ++VA+K IK +          + E+ +L  LN    
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHP--  58

Query  386  KNDDHHLLRLKDTFIHRQHLCLVFELLS-VNLYELIKQNQFRGLSTTLVRVFAQQLLNAL  444
                 +++RL D F  + +L LV E +   +L++L+ +      S    +   +Q+L  L
Sbjct  59   -----NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEK--GAFSEREAKFIMKQILEGL  111

Query  445  SLLNKAHLIHCDLKPENILLKNLESPIIKVIDFGSACDERQTVYTYIQSRFYRSPEVLLG  504
                                                 +   ++ T++ + +Y +PEVL G
Sbjct  112  -------------------------------------ESGSSLTTFVGTPWYMAPEVLGG  134

Query  505  LPYSSAIDMWSLGCIVVELFLGLPLFPGSSE----YNQVCRIVEMLGLPPTW  552
             PY   +D+WSLGCI+ EL  G P FPG +        + +      LP   
Sbjct  135  NPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNL  186


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 89.1 bits (222),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 27/217 (12%)

Query  331  ILDVLGQGTFGQVVKC----QNLKTQEVVAVKVIKNKT-AYFNQSMM-EVSVLDLLNSKY  384
            + + LG+G FG+V K     +   T+  VAVK +K        +  + E S++     K 
Sbjct  3    LGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIM----KKL  58

Query  385  DKNDDH-HLLRLKDTFIHRQHLCLVFELLS-VNLYELIKQNQFRGLST-TLVRVFAQQLL  441
            D    H ++++L       + L +V E +   +L + +++++ R L+   L+   A Q+ 
Sbjct  59   D----HPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHK-RKLTLKDLLS-MALQIA  112

Query  442  NALSLLNKAHLIHCDLKPENILLKNLESPIIKVIDFGSACDERQTVYTYIQSR-----FY  496
              +  L   + +H DL   N L+   E+ ++K+ DFG + D     Y   +        +
Sbjct  113  KGMEYLESKNFVHRDLAARNCLVS--ENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  497  RSPEVLLGLPYSSAIDMWSLGCIVVELF-LGLPLFPG  532
             +PE L    ++S  D+WS G ++ E+F LG   +PG
Sbjct  171  MAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPG  207



Lambda      K        H        a         alpha
   0.315    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0715    0.140     1.90     42.6     43.6 

Effective search space used: 843579880


Query= TCONS_00029710

Length=482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  77.7    5e-17
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            64.4    4e-12


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 77.7 bits (192),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 33/120 (28%), Positives = 58/120 (48%), Gaps = 13/120 (11%)

Query  345  YLILDVLGQGTFGQVVKCQNLKTQEVVAVKVIKNKTA---YFNQSMMEVSVLDLLNSKYD  401
            Y +L  LG G+FG V K ++  T ++VA+K IK +          + E+ +L  LN    
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHP--  58

Query  402  KNDDHHLLRLKDTFIHRQHLCLVFELLS-VNLYELIKQNQFRGLSTTLVRVFAQQLLNAL  460
                 +++RL D F  + +L LV E +   +L++L+ +      S    +   +Q+L  L
Sbjct  59   -----NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEK--GAFSEREAKFIMKQILEGL  111


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 64.4 bits (158),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 19/145 (13%)

Query  347  ILDVLGQGTFGQVVKC----QNLKTQEVVAVKVIKNKT-AYFNQSMM-EVSVLDLLNSKY  400
            + + LG+G FG+V K     +   T+  VAVK +K        +  + E S++     K 
Sbjct  3    LGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIM----KKL  58

Query  401  DKNDDH-HLLRLKDTFIHRQHLCLVFELLS-VNLYELIKQNQFRGLST-TLVRVFAQQLL  457
                DH ++++L       + L +V E +   +L + +++++ R L+   L+   A Q+ 
Sbjct  59   ----DHPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHK-RKLTLKDLLS-MALQIA  112

Query  458  NALSLLNKAHLIHCDLKPENILLKK  482
              +  L   + +H DL   N L+ +
Sbjct  113  KGMEYLESKNFVHRDLAARNCLVSE  137



Lambda      K        H        a         alpha
   0.313    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 591999806


Query= TCONS_00034546

Length=862
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428482 pfam05470, eIF-3c_N, Eukaryotic translation initiation...  582     0.0  


>CDD:428482 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 
3 subunit 8 N-terminus.  The largest of the mammalian translation 
initiation factors, eIF3, consists of at least eight 
subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 
40 S ribosome in an early step of translation initiation 
and promotes the binding of methionyl-tRNAi and mRNA.
Length=593

 Score = 582 bits (1503),  Expect = 0.0, Method: Composition-based stats.
 Identities = 251/601 (42%), Positives = 360/601 (60%), Gaps = 39/601 (6%)

Query  59   KFLKDVASDSEEEEEEEKVTVVKSAKDKRLDELENTIKLIENAKKINDWAVISTEFDKLN  118
            KFL+D +SD   +EE+ K  VVKSAKDKR +E+ + IK I NA KINDW  +  EFD LN
Sbjct  1    KFLRDDSSDESSDEEDTK-RVVKSAKDKRFEEMTSIIKTIRNAMKINDWVTLLEEFDLLN  59

Query  119  RQVAK---ITQSGPTPKIYIKAVADLEDFVNETVAKQKSGDKKLNASQAKGFNAAKQRIK  175
            +   K   + ++  TP+ YIK +A+LEDF+NE     K G KKL+ + AK  N  +Q++K
Sbjct  60   KAYQKAKTVQENVGTPRFYIKTLAELEDFLNELWD-DKEGKKKLSKNNAKALNTLRQKVK  118

Query  176  KNNKDYGNLIDKYRKDKEDFMESDDEEAIP--------------VIAAPRITKL--ERIE  219
            K N+ + + I +YR+D E   + + E+                 V+A   +      R+ 
Sbjct  119  KYNRQFEDDITRYREDPEQEDKEEPEDEDDDDDGDDISDEDEDGVVATRGVVAPTESRVI  178

Query  220  APAAAIDDDGFATVGRGGKTL---------QYTPESILKHLRVIVESRGKKNTDRMEQIR  270
                A ++D  A   +              + T   + K L  I+ +RGKK TDR EQI 
Sbjct  179  RVKEADEEDEDADWTKVNVEEKPKMFQKPEEITHADVFKKLNEIMSARGKKTTDRSEQID  238

Query  271  TMEKLLEVAQTPYQRIRVYLTLISTRFDLTSTSSANYMAVDQWKSAEQDFSSLLSVLENN  330
             +E+LL +A+TPY ++++   +IS RFD  +   + YM +DQWK    + +SLL +L+ N
Sbjct  239  LLEELLTIAETPYLKVKIKFNIISARFDY-NAGLSGYMPIDQWKKCLNNMNSLLDILDAN  297

Query  331  RDHVVFEG-AEEWEDDEKQPTIAPGETLYIPGSIVSFAERLDDELTRSLQHIDPHTAEYI  389
             + VV E  A+E E+ E +        + + GSI++F ERLDDE T+SLQ+IDPH+ +Y+
Sbjct  298  PNIVVVEEVADEVEELEDETPEDADGVIRVQGSILAFVERLDDEFTKSLQNIDPHSNDYV  357

Query  390  ERLSDEKLLYTDLVRAQAYVEGLNEVEKTDPRQDSVNRVVMRRLEHVYFKPSQVITILED  449
            ERL DE  +Y  + R Q Y E   + E       +V RV +RR+EH+Y+KP +VI   E 
Sbjct  358  ERLKDEPSVYALIERVQDYFERTGDSE-------AVCRVYLRRIEHIYYKPQEVIDTEEW  410

Query  450  ATWKSLPSELDSSITPRASSGNVENLVLSLCNYLFKYSDGIIRARAMLCQIYFLALHDQY  509
                S     ++     A++   + L+  LC Y++K     +R RAMLC IY  ALHD +
Sbjct  411  NIIPSFIVSKETVPRKPATAETSDALMDGLCKYIYKDGTDRLRTRAMLCHIYHHALHDNF  470

Query  510  YRSRDLMLMSHLTENISNFDVSTQILFNRTLVQIGLCAFRSGLIYEAQNTLSEVCGSGRQ  569
            Y +RDL+LMSHL +NI + D+STQILFNRT+VQ+GLCAFR G+I EA   LS++  +GR 
Sbjct  471  YTARDLLLMSHLQDNIQHADISTQILFNRTMVQLGLCAFRQGMIKEAHQCLSDLQSTGRV  530

Query  570  KELLAQGIIMQRYSTVSPEQERLERQRQLPFHMHINLELLECIYLTSSMFLEVPLMAQTS  629
            KELL QG++ +R    + EQE++ER+RQLP+HMHINLELLEC+YLT +M LE+P MA   
Sbjct  531  KELLGQGVLQRRQHEKTAEQEKIERRRQLPYHMHINLELLECVYLTCAMLLEIPYMAAHE  590

Query  630  S  630
            S
Sbjct  591  S  591



Lambda      K        H        a         alpha
   0.313    0.130    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1101039238


Query= TCONS_00029711

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  90.0    4e-21
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            62.9    1e-11


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 90.0 bits (224),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 93/291 (32%), Gaps = 120/291 (41%)

Query  1    MMEVSVLDLLNSKYDKNDDHHLLRLKDTFIHRQHLCLVFELLS-VNLYELIKQNQFRGLS  59
            + E+ +L  LN         +++RL D F  + +L LV E +   +L++L+ +      S
Sbjct  46   LREIKILKKLNHP-------NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEK--GAFS  96

Query  60   TTLVRVFAQQLLNALSLLNKAHLIHCDLKPENILLKNLESPIIKVIDFGSACDERQTVYT  119
                +   +Q+L  L                                     +   ++ T
Sbjct  97   EREAKFIMKQILEGL-------------------------------------ESGSSLTT  119

Query  120  YIQSRFYRSPEVLLGLPYSSAIDMWSLGCIVVELFLGLPLFPGSSEYNQVCRIVEMLGLP  179
            ++ + +Y +PEVL G PY   +D+WSLGCI+ EL  G P FPG +       I+      
Sbjct  120  FVGTPWYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII------  173

Query  180  PTWMLEMGKQSGEFFEKTQDEFGRKTYRLKSLEQYSREHNTKEQPSKKYFQASTLEEIIR  239
                                                      +QP       S L E   
Sbjct  174  ------------------------------------------DQPYAFPELPSNLSE---  188

Query  240  SYPMPRKNMKQAEIERELNNRVAFIDFVRGLLSINPLERWSPQQAKLHPFI  290
                                     D ++ LL  +P +R +  QA  HP+ 
Sbjct  189  ----------------------EAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 62.9 bits (154),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 42/171 (25%), Positives = 81/171 (47%), Gaps = 21/171 (12%)

Query  1    MMEVSVLDLLNSKYDKNDDH-HLLRLKDTFIHRQHLCLVFELLS-VNLYELIKQNQFRGL  58
            + E S++     K D    H ++++L       + L +V E +   +L + +++++ R L
Sbjct  49   LEEASIM----KKLD----HPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHK-RKL  99

Query  59   ST-TLVRVFAQQLLNALSLLNKAHLIHCDLKPENILLKNLESPIIKVIDFGSACDERQTV  117
            +   L+   A Q+   +  L   + +H DL   N L+   E+ ++K+ DFG + D     
Sbjct  100  TLKDLLS-MALQIAKGMEYLESKNFVHRDLAARNCLVS--ENLVVKISDFGLSRDIYDDD  156

Query  118  YTYIQSR-----FYRSPEVLLGLPYSSAIDMWSLGCIVVELF-LGLPLFPG  162
            Y   +        + +PE L    ++S  D+WS G ++ E+F LG   +PG
Sbjct  157  YYRKRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPG  207



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00034547

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  90.0    4e-21
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            62.9    1e-11


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 90.0 bits (224),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 93/291 (32%), Gaps = 120/291 (41%)

Query  1    MMEVSVLDLLNSKYDKNDDHHLLRLKDTFIHRQHLCLVFELLS-VNLYELIKQNQFRGLS  59
            + E+ +L  LN         +++RL D F  + +L LV E +   +L++L+ +      S
Sbjct  46   LREIKILKKLNHP-------NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEK--GAFS  96

Query  60   TTLVRVFAQQLLNALSLLNKAHLIHCDLKPENILLKNLESPIIKVIDFGSACDERQTVYT  119
                +   +Q+L  L                                     +   ++ T
Sbjct  97   EREAKFIMKQILEGL-------------------------------------ESGSSLTT  119

Query  120  YIQSRFYRSPEVLLGLPYSSAIDMWSLGCIVVELFLGLPLFPGSSEYNQVCRIVEMLGLP  179
            ++ + +Y +PEVL G PY   +D+WSLGCI+ EL  G P FPG +       I+      
Sbjct  120  FVGTPWYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII------  173

Query  180  PTWMLEMGKQSGEFFEKTQDEFGRKTYRLKSLEQYSREHNTKEQPSKKYFQASTLEEIIR  239
                                                      +QP       S L E   
Sbjct  174  ------------------------------------------DQPYAFPELPSNLSE---  188

Query  240  SYPMPRKNMKQAEIERELNNRVAFIDFVRGLLSINPLERWSPQQAKLHPFI  290
                                     D ++ LL  +P +R +  QA  HP+ 
Sbjct  189  ----------------------EAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 62.9 bits (154),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 42/171 (25%), Positives = 81/171 (47%), Gaps = 21/171 (12%)

Query  1    MMEVSVLDLLNSKYDKNDDH-HLLRLKDTFIHRQHLCLVFELLS-VNLYELIKQNQFRGL  58
            + E S++     K D    H ++++L       + L +V E +   +L + +++++ R L
Sbjct  49   LEEASIM----KKLD----HPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHK-RKL  99

Query  59   ST-TLVRVFAQQLLNALSLLNKAHLIHCDLKPENILLKNLESPIIKVIDFGSACDERQTV  117
            +   L+   A Q+   +  L   + +H DL   N L+   E+ ++K+ DFG + D     
Sbjct  100  TLKDLLS-MALQIAKGMEYLESKNFVHRDLAARNCLVS--ENLVVKISDFGLSRDIYDDD  156

Query  118  YTYIQSR-----FYRSPEVLLGLPYSSAIDMWSLGCIVVELF-LGLPLFPG  162
            Y   +        + +PE L    ++S  D+WS G ++ E+F LG   +PG
Sbjct  157  YYRKRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPG  207



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00029712

Length=894
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  128     4e-34
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            89.1    4e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 128 bits (324),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 116/336 (35%), Gaps = 123/336 (37%)

Query  345  YLILDVLGQGTFGQVVKCQNLKTQEVVAVKVIKNKTA---YFNQSMMEVSVLDLLNSKYD  401
            Y +L  LG G+FG V K ++  T ++VA+K IK +          + E+ +L  LN    
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHP--  58

Query  402  KNDDHHLLRLKDTFIHRQHLCLVFELLS-VNLYELIKQNQFRGLSTTLVRVFAQQLLNAL  460
                 +++RL D F  + +L LV E +   +L++L+ +      S    +   +Q+L  L
Sbjct  59   -----NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEK--GAFSEREAKFIMKQILEGL  111

Query  461  SLLNKAHLIHCDLKPENILLKNLESPIIKVIDFGSACDERQTVYTYIQSRFYRSPEVLLG  520
                                                 +   ++ T++ + +Y +PEVL G
Sbjct  112  -------------------------------------ESGSSLTTFVGTPWYMAPEVLGG  134

Query  521  LPYSSAIDMWSLGCIVVELFLGLPLFPGSSEYNQVCRIVEMLGLPPTWMLEMGKQSGEFF  580
             PY   +D+WSLGCI+ EL  G P FPG +       I+                     
Sbjct  135  NPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII---------------------  173

Query  581  EKTQDEFGRKTYRLKSLEQYSREHNTKEQPSKKYFQASTLEEIIRSYPMPRKNMKQAEIE  640
                                       +QP       S L E                  
Sbjct  174  ---------------------------DQPYAFPELPSNLSE------------------  188

Query  641  RELNNRVAFIDFVRGLLSINPLERWSPQQAKLHPFI  676
                      D ++ LL  +P +R +  QA  HP+ 
Sbjct  189  -------EAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 89.1 bits (222),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 27/217 (12%)

Query  347  ILDVLGQGTFGQVVKC----QNLKTQEVVAVKVIKNKT-AYFNQSMM-EVSVLDLLNSKY  400
            + + LG+G FG+V K     +   T+  VAVK +K        +  + E S++     K 
Sbjct  3    LGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIM----KKL  58

Query  401  DKNDDH-HLLRLKDTFIHRQHLCLVFELLS-VNLYELIKQNQFRGLST-TLVRVFAQQLL  457
            D    H ++++L       + L +V E +   +L + +++++ R L+   L+   A Q+ 
Sbjct  59   D----HPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHK-RKLTLKDLLS-MALQIA  112

Query  458  NALSLLNKAHLIHCDLKPENILLKNLESPIIKVIDFGSACDERQTVYTYIQSR-----FY  512
              +  L   + +H DL   N L+   E+ ++K+ DFG + D     Y   +        +
Sbjct  113  KGMEYLESKNFVHRDLAARNCLVS--ENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKW  170

Query  513  RSPEVLLGLPYSSAIDMWSLGCIVVELF-LGLPLFPG  548
             +PE L    ++S  D+WS G ++ E+F LG   +PG
Sbjct  171  MAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPG  207



Lambda      K        H        a         alpha
   0.315    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1146975686


Query= TCONS_00034548

Length=862
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428482 pfam05470, eIF-3c_N, Eukaryotic translation initiation...  582     0.0  


>CDD:428482 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 
3 subunit 8 N-terminus.  The largest of the mammalian translation 
initiation factors, eIF3, consists of at least eight 
subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 
40 S ribosome in an early step of translation initiation 
and promotes the binding of methionyl-tRNAi and mRNA.
Length=593

 Score = 582 bits (1503),  Expect = 0.0, Method: Composition-based stats.
 Identities = 251/601 (42%), Positives = 360/601 (60%), Gaps = 39/601 (6%)

Query  59   KFLKDVASDSEEEEEEEKVTVVKSAKDKRLDELENTIKLIENAKKINDWAVISTEFDKLN  118
            KFL+D +SD   +EE+ K  VVKSAKDKR +E+ + IK I NA KINDW  +  EFD LN
Sbjct  1    KFLRDDSSDESSDEEDTK-RVVKSAKDKRFEEMTSIIKTIRNAMKINDWVTLLEEFDLLN  59

Query  119  RQVAK---ITQSGPTPKIYIKAVADLEDFVNETVAKQKSGDKKLNASQAKGFNAAKQRIK  175
            +   K   + ++  TP+ YIK +A+LEDF+NE     K G KKL+ + AK  N  +Q++K
Sbjct  60   KAYQKAKTVQENVGTPRFYIKTLAELEDFLNELWD-DKEGKKKLSKNNAKALNTLRQKVK  118

Query  176  KNNKDYGNLIDKYRKDKEDFMESDDEEAIP--------------VIAAPRITKL--ERIE  219
            K N+ + + I +YR+D E   + + E+                 V+A   +      R+ 
Sbjct  119  KYNRQFEDDITRYREDPEQEDKEEPEDEDDDDDGDDISDEDEDGVVATRGVVAPTESRVI  178

Query  220  APAAAIDDDGFATVGRGGKTL---------QYTPESILKHLRVIVESRGKKNTDRMEQIR  270
                A ++D  A   +              + T   + K L  I+ +RGKK TDR EQI 
Sbjct  179  RVKEADEEDEDADWTKVNVEEKPKMFQKPEEITHADVFKKLNEIMSARGKKTTDRSEQID  238

Query  271  TMEKLLEVAQTPYQRIRVYLTLISTRFDLTSTSSANYMAVDQWKSAEQDFSSLLSVLENN  330
             +E+LL +A+TPY ++++   +IS RFD  +   + YM +DQWK    + +SLL +L+ N
Sbjct  239  LLEELLTIAETPYLKVKIKFNIISARFDY-NAGLSGYMPIDQWKKCLNNMNSLLDILDAN  297

Query  331  RDHVVFEG-AEEWEDDEKQPTIAPGETLYIPGSIVSFAERLDDELTRSLQHIDPHTAEYI  389
             + VV E  A+E E+ E +        + + GSI++F ERLDDE T+SLQ+IDPH+ +Y+
Sbjct  298  PNIVVVEEVADEVEELEDETPEDADGVIRVQGSILAFVERLDDEFTKSLQNIDPHSNDYV  357

Query  390  ERLSDEKLLYTDLVRAQAYVEGLNEVEKTDPRQDSVNRVVMRRLEHVYFKPSQVITILED  449
            ERL DE  +Y  + R Q Y E   + E       +V RV +RR+EH+Y+KP +VI   E 
Sbjct  358  ERLKDEPSVYALIERVQDYFERTGDSE-------AVCRVYLRRIEHIYYKPQEVIDTEEW  410

Query  450  ATWKSLPSELDSSITPRASSGNVENLVLSLCNYLFKYSDGIIRARAMLCQIYFLALHDQY  509
                S     ++     A++   + L+  LC Y++K     +R RAMLC IY  ALHD +
Sbjct  411  NIIPSFIVSKETVPRKPATAETSDALMDGLCKYIYKDGTDRLRTRAMLCHIYHHALHDNF  470

Query  510  YRSRDLMLMSHLTENISNFDVSTQILFNRTLVQIGLCAFRSGLIYEAQNTLSEVCGSGRQ  569
            Y +RDL+LMSHL +NI + D+STQILFNRT+VQ+GLCAFR G+I EA   LS++  +GR 
Sbjct  471  YTARDLLLMSHLQDNIQHADISTQILFNRTMVQLGLCAFRQGMIKEAHQCLSDLQSTGRV  530

Query  570  KELLAQGIIMQRYSTVSPEQERLERQRQLPFHMHINLELLECIYLTSSMFLEVPLMAQTS  629
            KELL QG++ +R    + EQE++ER+RQLP+HMHINLELLEC+YLT +M LE+P MA   
Sbjct  531  KELLGQGVLQRRQHEKTAEQEKIERRRQLPYHMHINLELLECVYLTCAMLLEIPYMAAHE  590

Query  630  S  630
            S
Sbjct  591  S  591



Lambda      K        H        a         alpha
   0.313    0.130    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1101039238


Query= TCONS_00029713

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428482 pfam05470, eIF-3c_N, Eukaryotic translation initiation...  449     2e-151


>CDD:428482 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 
3 subunit 8 N-terminus.  The largest of the mammalian translation 
initiation factors, eIF3, consists of at least eight 
subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 
40 S ribosome in an early step of translation initiation 
and promotes the binding of methionyl-tRNAi and mRNA.
Length=593

 Score = 449 bits (1157),  Expect = 2e-151, Method: Composition-based stats.
 Identities = 187/442 (42%), Positives = 263/442 (60%), Gaps = 16/442 (4%)

Query  2    ESDDEEAIPVIAAPRITKLERIEAPAAAIDDDGFATVGRG-------GKTLQYTPESILK  54
            E +D                     A   D+D   T            K  + T   + K
Sbjct  158  EDEDGVVATRGVVAPTESRVIRVKEADEEDEDADWTKVNVEEKPKMFQKPEEITHADVFK  217

Query  55   HLRVIVESRGKKNTDRMEQIRTMEKLLEVAQTPYQRIRVYLTLISTRFDLTSTSSANYMA  114
             L  I+ +RGKK TDR EQI  +E+LL +A+TPY ++++   +IS RFD  +   + YM 
Sbjct  218  KLNEIMSARGKKTTDRSEQIDLLEELLTIAETPYLKVKIKFNIISARFDY-NAGLSGYMP  276

Query  115  VDQWKSAEQDFSSLLSVLENNRDHVVFEG-AEEWEDDEKQPTIAPGETLYIPGSIVSFAE  173
            +DQWK    + +SLL +L+ N + VV E  A+E E+ E +        + + GSI++F E
Sbjct  277  IDQWKKCLNNMNSLLDILDANPNIVVVEEVADEVEELEDETPEDADGVIRVQGSILAFVE  336

Query  174  RLDDELTRSLQHIDPHTAEYIERLSDEKLLYTDLVRAQAYVEGLNEVEKTDPRQDSVNRV  233
            RLDDE T+SLQ+IDPH+ +Y+ERL DE  +Y  + R Q Y E   + E       +V RV
Sbjct  337  RLDDEFTKSLQNIDPHSNDYVERLKDEPSVYALIERVQDYFERTGDSE-------AVCRV  389

Query  234  VMRRLEHVYFKPSQVITILEDATWKSLPSELDSSITPRASSGNVENLVLSLCNYLFKYSD  293
             +RR+EH+Y+KP +VI   E     S     ++     A++   + L+  LC Y++K   
Sbjct  390  YLRRIEHIYYKPQEVIDTEEWNIIPSFIVSKETVPRKPATAETSDALMDGLCKYIYKDGT  449

Query  294  GIIRARAMLCQIYFLALHDQYYRSRDLMLMSHLTENISNFDVSTQILFNRTLVQIGLCAF  353
              +R RAMLC IY  ALHD +Y +RDL+LMSHL +NI + D+STQILFNRT+VQ+GLCAF
Sbjct  450  DRLRTRAMLCHIYHHALHDNFYTARDLLLMSHLQDNIQHADISTQILFNRTMVQLGLCAF  509

Query  354  RSGLIYEAQNTLSEVCGSGRQKELLAQGIIMQRYSTVSPEQERLERQRQLPFHMHINLEL  413
            R G+I EA   LS++  +GR KELL QG++ +R    + EQE++ER+RQLP+HMHINLEL
Sbjct  510  RQGMIKEAHQCLSDLQSTGRVKELLGQGVLQRRQHEKTAEQEKIERRRQLPYHMHINLEL  569

Query  414  LECIYLTSSMFLEVPLMAQTSS  435
            LEC+YLT +M LE+P MA   S
Sbjct  570  LECVYLTCAMLLEIPYMAAHES  591



Lambda      K        H        a         alpha
   0.317    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 846529460


Query= TCONS_00029714

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428482 pfam05470, eIF-3c_N, Eukaryotic translation initiation...  449     2e-151


>CDD:428482 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 
3 subunit 8 N-terminus.  The largest of the mammalian translation 
initiation factors, eIF3, consists of at least eight 
subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 
40 S ribosome in an early step of translation initiation 
and promotes the binding of methionyl-tRNAi and mRNA.
Length=593

 Score = 449 bits (1157),  Expect = 2e-151, Method: Composition-based stats.
 Identities = 187/442 (42%), Positives = 263/442 (60%), Gaps = 16/442 (4%)

Query  2    ESDDEEAIPVIAAPRITKLERIEAPAAAIDDDGFATVGRG-------GKTLQYTPESILK  54
            E +D                     A   D+D   T            K  + T   + K
Sbjct  158  EDEDGVVATRGVVAPTESRVIRVKEADEEDEDADWTKVNVEEKPKMFQKPEEITHADVFK  217

Query  55   HLRVIVESRGKKNTDRMEQIRTMEKLLEVAQTPYQRIRVYLTLISTRFDLTSTSSANYMA  114
             L  I+ +RGKK TDR EQI  +E+LL +A+TPY ++++   +IS RFD  +   + YM 
Sbjct  218  KLNEIMSARGKKTTDRSEQIDLLEELLTIAETPYLKVKIKFNIISARFDY-NAGLSGYMP  276

Query  115  VDQWKSAEQDFSSLLSVLENNRDHVVFEG-AEEWEDDEKQPTIAPGETLYIPGSIVSFAE  173
            +DQWK    + +SLL +L+ N + VV E  A+E E+ E +        + + GSI++F E
Sbjct  277  IDQWKKCLNNMNSLLDILDANPNIVVVEEVADEVEELEDETPEDADGVIRVQGSILAFVE  336

Query  174  RLDDELTRSLQHIDPHTAEYIERLSDEKLLYTDLVRAQAYVEGLNEVEKTDPRQDSVNRV  233
            RLDDE T+SLQ+IDPH+ +Y+ERL DE  +Y  + R Q Y E   + E       +V RV
Sbjct  337  RLDDEFTKSLQNIDPHSNDYVERLKDEPSVYALIERVQDYFERTGDSE-------AVCRV  389

Query  234  VMRRLEHVYFKPSQVITILEDATWKSLPSELDSSITPRASSGNVENLVLSLCNYLFKYSD  293
             +RR+EH+Y+KP +VI   E     S     ++     A++   + L+  LC Y++K   
Sbjct  390  YLRRIEHIYYKPQEVIDTEEWNIIPSFIVSKETVPRKPATAETSDALMDGLCKYIYKDGT  449

Query  294  GIIRARAMLCQIYFLALHDQYYRSRDLMLMSHLTENISNFDVSTQILFNRTLVQIGLCAF  353
              +R RAMLC IY  ALHD +Y +RDL+LMSHL +NI + D+STQILFNRT+VQ+GLCAF
Sbjct  450  DRLRTRAMLCHIYHHALHDNFYTARDLLLMSHLQDNIQHADISTQILFNRTMVQLGLCAF  509

Query  354  RSGLIYEAQNTLSEVCGSGRQKELLAQGIIMQRYSTVSPEQERLERQRQLPFHMHINLEL  413
            R G+I EA   LS++  +GR KELL QG++ +R    + EQE++ER+RQLP+HMHINLEL
Sbjct  510  RQGMIKEAHQCLSDLQSTGRVKELLGQGVLQRRQHEKTAEQEKIERRRQLPYHMHINLEL  569

Query  414  LECIYLTSSMFLEVPLMAQTSS  435
            LEC+YLT +M LE+P MA   S
Sbjct  570  LECVYLTCAMLLEIPYMAAHES  591



Lambda      K        H        a         alpha
   0.317    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 846529460


Query= TCONS_00029715

Length=862
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428482 pfam05470, eIF-3c_N, Eukaryotic translation initiation...  582     0.0  


>CDD:428482 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 
3 subunit 8 N-terminus.  The largest of the mammalian translation 
initiation factors, eIF3, consists of at least eight 
subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 
40 S ribosome in an early step of translation initiation 
and promotes the binding of methionyl-tRNAi and mRNA.
Length=593

 Score = 582 bits (1503),  Expect = 0.0, Method: Composition-based stats.
 Identities = 251/601 (42%), Positives = 360/601 (60%), Gaps = 39/601 (6%)

Query  59   KFLKDVASDSEEEEEEEKVTVVKSAKDKRLDELENTIKLIENAKKINDWAVISTEFDKLN  118
            KFL+D +SD   +EE+ K  VVKSAKDKR +E+ + IK I NA KINDW  +  EFD LN
Sbjct  1    KFLRDDSSDESSDEEDTK-RVVKSAKDKRFEEMTSIIKTIRNAMKINDWVTLLEEFDLLN  59

Query  119  RQVAK---ITQSGPTPKIYIKAVADLEDFVNETVAKQKSGDKKLNASQAKGFNAAKQRIK  175
            +   K   + ++  TP+ YIK +A+LEDF+NE     K G KKL+ + AK  N  +Q++K
Sbjct  60   KAYQKAKTVQENVGTPRFYIKTLAELEDFLNELWD-DKEGKKKLSKNNAKALNTLRQKVK  118

Query  176  KNNKDYGNLIDKYRKDKEDFMESDDEEAIP--------------VIAAPRITKL--ERIE  219
            K N+ + + I +YR+D E   + + E+                 V+A   +      R+ 
Sbjct  119  KYNRQFEDDITRYREDPEQEDKEEPEDEDDDDDGDDISDEDEDGVVATRGVVAPTESRVI  178

Query  220  APAAAIDDDGFATVGRGGKTL---------QYTPESILKHLRVIVESRGKKNTDRMEQIR  270
                A ++D  A   +              + T   + K L  I+ +RGKK TDR EQI 
Sbjct  179  RVKEADEEDEDADWTKVNVEEKPKMFQKPEEITHADVFKKLNEIMSARGKKTTDRSEQID  238

Query  271  TMEKLLEVAQTPYQRIRVYLTLISTRFDLTSTSSANYMAVDQWKSAEQDFSSLLSVLENN  330
             +E+LL +A+TPY ++++   +IS RFD  +   + YM +DQWK    + +SLL +L+ N
Sbjct  239  LLEELLTIAETPYLKVKIKFNIISARFDY-NAGLSGYMPIDQWKKCLNNMNSLLDILDAN  297

Query  331  RDHVVFEG-AEEWEDDEKQPTIAPGETLYIPGSIVSFAERLDDELTRSLQHIDPHTAEYI  389
             + VV E  A+E E+ E +        + + GSI++F ERLDDE T+SLQ+IDPH+ +Y+
Sbjct  298  PNIVVVEEVADEVEELEDETPEDADGVIRVQGSILAFVERLDDEFTKSLQNIDPHSNDYV  357

Query  390  ERLSDEKLLYTDLVRAQAYVEGLNEVEKTDPRQDSVNRVVMRRLEHVYFKPSQVITILED  449
            ERL DE  +Y  + R Q Y E   + E       +V RV +RR+EH+Y+KP +VI   E 
Sbjct  358  ERLKDEPSVYALIERVQDYFERTGDSE-------AVCRVYLRRIEHIYYKPQEVIDTEEW  410

Query  450  ATWKSLPSELDSSITPRASSGNVENLVLSLCNYLFKYSDGIIRARAMLCQIYFLALHDQY  509
                S     ++     A++   + L+  LC Y++K     +R RAMLC IY  ALHD +
Sbjct  411  NIIPSFIVSKETVPRKPATAETSDALMDGLCKYIYKDGTDRLRTRAMLCHIYHHALHDNF  470

Query  510  YRSRDLMLMSHLTENISNFDVSTQILFNRTLVQIGLCAFRSGLIYEAQNTLSEVCGSGRQ  569
            Y +RDL+LMSHL +NI + D+STQILFNRT+VQ+GLCAFR G+I EA   LS++  +GR 
Sbjct  471  YTARDLLLMSHLQDNIQHADISTQILFNRTMVQLGLCAFRQGMIKEAHQCLSDLQSTGRV  530

Query  570  KELLAQGIIMQRYSTVSPEQERLERQRQLPFHMHINLELLECIYLTSSMFLEVPLMAQTS  629
            KELL QG++ +R    + EQE++ER+RQLP+HMHINLELLEC+YLT +M LE+P MA   
Sbjct  531  KELLGQGVLQRRQHEKTAEQEKIERRRQLPYHMHINLELLECVYLTCAMLLEIPYMAAHE  590

Query  630  S  630
            S
Sbjct  591  S  591



Lambda      K        H        a         alpha
   0.313    0.130    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1101039238


Query= TCONS_00029716

Length=815
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428482 pfam05470, eIF-3c_N, Eukaryotic translation initiation...  505     4e-171


>CDD:428482 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 
3 subunit 8 N-terminus.  The largest of the mammalian translation 
initiation factors, eIF3, consists of at least eight 
subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 
40 S ribosome in an early step of translation initiation 
and promotes the binding of methionyl-tRNAi and mRNA.
Length=593

 Score = 505 bits (1302),  Expect = 4e-171, Method: Composition-based stats.
 Identities = 229/601 (38%), Positives = 328/601 (55%), Gaps = 86/601 (14%)

Query  59   KFLKDVASDSEEEEEEEKVTVVKSAKDKRLDELENTIKLIENAKKINDWAVISTEFDKLN  118
            KFL+D +SD   +EE+ K  VVKSAKDKR +E+ + IK I NA KINDW  +  EFD LN
Sbjct  1    KFLRDDSSDESSDEEDTK-RVVKSAKDKRFEEMTSIIKTIRNAMKINDWVTLLEEFDLLN  59

Query  119  RQVAK---ITQSGPTPKIYIKAVADLEDFVNETVAKQKSGDKKLNASQAKGFNAAKQRIK  175
            +   K   + ++  TP+ YIK +A+LEDF+NE     K G KKL+ + AK  N  +Q++K
Sbjct  60   KAYQKAKTVQENVGTPRFYIKTLAELEDFLNELWD-DKEGKKKLSKNNAKALNTLRQKVK  118

Query  176  KNNKDYGNLIDKYRKDKEDFMESDDEEAIP--------------VIAAPRITKL--ERIE  219
            K N+ + + I +YR+D E   + + E+                 V+A   +      R+ 
Sbjct  119  KYNRQFEDDITRYREDPEQEDKEEPEDEDDDDDGDDISDEDEDGVVATRGVVAPTESRVI  178

Query  220  APAAAIDDDGFATVGRGGKTL---------QYTPESILKHLRVIVESRGKKNTDRMEQIR  270
                A ++D  A   +              + T   + K L  I+ +RGKK TDR EQI 
Sbjct  179  RVKEADEEDEDADWTKVNVEEKPKMFQKPEEITHADVFKKLNEIMSARGKKTTDRSEQID  238

Query  271  TMEKLLEVAQTPYQRIRVYLTLISTRFDLTSTSSANYMAVDQWKSAEQDFSSLLSVLENN  330
             +E+LL +A+TPY ++++   +IS RFD  +   + YM +DQWK    + +SLL +L+ N
Sbjct  239  LLEELLTIAETPYLKVKIKFNIISARFDY-NAGLSGYMPIDQWKKCLNNMNSLLDILDAN  297

Query  331  RDHVVFEG-AEEWEDDEKQPTIAPGETLYIPGSIVSFAERLDDELTRSLQHIDPHTAEYI  389
             + VV E  A+E E+ E +        + + GSI++F ERLDDE T+SLQ+IDPH+ +Y+
Sbjct  298  PNIVVVEEVADEVEELEDETPEDADGVIRVQGSILAFVERLDDEFTKSLQNIDPHSNDYV  357

Query  390  ERLSDEKLLYTDLVRAQAYVEGLNEVEKTDPRQDSVNRVVMRRLEHVYFKPSQVITILED  449
            ERL DE  +Y  + R Q Y E   + E       +V RV +RR+EH+Y+KP +VI   E 
Sbjct  358  ERLKDEPSVYALIERVQDYFERTGDSE-------AVCRVYLRRIEHIYYKPQEVIDTEEW  410

Query  450  ATWKSLPSELDSSITPRASSGNVENLVLSLCNYLFKYSDGIIRARAMLCQIYFLALHDQY  509
                S     ++     A++   + L+  LC Y++K     +R RAMLC IY  ALHD +
Sbjct  411  NIIPSFIVSKETVPRKPATAETSDALMDGLCKYIYKDGTDRLRTRAMLCHIYHHALHDNF  470

Query  510  YRSRDLMLMSHLTENISNFDVSTQILFNRTLVQIGLC-----------------------  546
            Y +RDL+LMSHL +NI + D+STQILFNRT+VQ+GLC                       
Sbjct  471  YTARDLLLMSHLQDNIQHADISTQILFNRTMVQLGLCAFRQGMIKEAHQCLSDLQSTGRV  530

Query  547  ------------------------RQRQLPFHMHINLELLECIYLTSSMFLEVPLMAQTS  582
                                    R+RQLP+HMHINLELLEC+YLT +M LE+P MA   
Sbjct  531  KELLGQGVLQRRQHEKTAEQEKIERRRQLPYHMHINLELLECVYLTCAMLLEIPYMAAHE  590

Query  583  S  583
            S
Sbjct  591  S  591



Lambda      K        H        a         alpha
   0.313    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1049164592


Query= TCONS_00029717

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.141    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00029718

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462360 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal d...  93.8    2e-25


>CDD:462360 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain. 
 This presumed domain is found at the N-terminus of Ribosomal 
L30 proteins and has been termed RL30NT or NUC018.
Length=72

 Score = 93.8 bits (234),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 45/72 (63%), Positives = 56/72 (78%), Gaps = 0/72 (0%)

Query  16  VPETLLKKRKSQEQARAAAREEAQKRKEANKKKREAIFKRAEAYVKEYRDAEREKIRLAR  75
           VPE+LLKKRK  E+ +A   ++A  RK+ANKKKR+ IFKRAE YVKEYR  ER++IRL R
Sbjct  1   VPESLLKKRKRNEKLKAERAKKALARKKANKKKRKLIFKRAEKYVKEYRRKERDEIRLKR  60

Query  76  VARQQGNFYVPD  87
            A++ GNFYVP 
Sbjct  61  EAKKAGNFYVPA  72



Lambda      K        H        a         alpha
   0.318    0.135    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00029719

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.141    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00029720

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462360 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal d...  97.3    2e-26


>CDD:462360 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain. 
 This presumed domain is found at the N-terminus of Ribosomal 
L30 proteins and has been termed RL30NT or NUC018.
Length=72

 Score = 97.3 bits (243),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 45/72 (63%), Positives = 56/72 (78%), Gaps = 0/72 (0%)

Query  62   VPETLLKKRKSQEQARAAAREEAQKRKEANKKKREAIFKRAEAYVKEYRDAEREKIRLAR  121
            VPE+LLKKRK  E+ +A   ++A  RK+ANKKKR+ IFKRAE YVKEYR  ER++IRL R
Sbjct  1    VPESLLKKRKRNEKLKAERAKKALARKKANKKKRKLIFKRAEKYVKEYRRKERDEIRLKR  60

Query  122  VARQQGNFYVPD  133
             A++ GNFYVP 
Sbjct  61   EAKKAGNFYVPA  72



Lambda      K        H        a         alpha
   0.318    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00034549

Length=578
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  195     5e-60
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  152     3e-43
CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  69.1    4e-14


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 195 bits (499),  Expect = 5e-60, Method: Composition-based stats.
 Identities = 79/194 (41%), Positives = 120/194 (62%), Gaps = 6/194 (3%)

Query  116  KVALVTGGGNGLGRSYCLLFAKLGASVVVNDLV--DPEPVVQEIKKMGGKA---VGNKAS  170
            KVALVTG  +G+GR+     AK GA VV+ D      E V +E+  +GGKA    G+   
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  171  CEDGDAVVKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVTKAAW  230
                 A+V+ A++  GR+DILVNNAGI     F+ ++D+ W  VI+V+L G + +T+A  
Sbjct  61   RAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVL  120

Query  231  PHMLKQKYGRIVNTTSTSGIYGNFGQANYAAAKLGILGFSRALAIEGAKYNIKVNTIAPN  290
            P M+K   GRIVN +S +G+    G + Y+A+K  ++GF+R+LA+E A + I+VN +AP 
Sbjct  121  PAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVAPG  180

Query  291  A-GTNMTRTIMPEE  303
               T+MT+ +  +E
Sbjct  181  GVDTDMTKELREDE  194


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 152 bits (387),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 67/219 (31%), Positives = 105/219 (48%), Gaps = 23/219 (11%)

Query  125  NGLGRSYCLLFAKLGASVVVNDLVDPE-PVVQEIKKMGGKAV--GNKASCEDGDAVVKTA  181
            +G+G +     A+ GA VV+ DL +     V+E+ +  G AV   +    E  +A+V  A
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVAAA  65

Query  182  IDAFGRIDILVNNAGILR--DKAFTNMNDDLWNAVINVHLRGTYKVTKAAWPHMLKQKYG  239
            ++ FGR+DILVNNAG        F + + + ++  ++V+L   + + KAA P M  ++ G
Sbjct  66   VEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM--KEGG  123

Query  240  RIVNTTSTSGIYGNFGQANYAAAKLGILGFSRALAIEGAKYNIKVNTIAPNAG---TNMT  296
             IVN +S            Y AAK  +   +R LA+E     I+VN I+P  G   T   
Sbjct  124  SIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAISP--GPIKTLAA  181

Query  297  RTI-MPEEMVQAF----------KPDYVAPMVALLCSDM  324
              I   +E++ A            P+ VA   A L SD+
Sbjct  182  SGIPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDL  220


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 69.1 bits (170),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 71/156 (46%), Gaps = 19/156 (12%)

Query  119  LVTGGGNGLGRSYCLLFAKLGASVVV----NDLVDPEPV--VQEIKKMGGKA------VG  166
            L+TGG  GLGR      A+ GA  +V    +    P+    + E++  G +       V 
Sbjct  4    LITGGLGGLGRELARWLAERGARHLVLLSRSAAPRPDAQALIAELEARGVEVVVVACDVS  63

Query  167  NKASCEDGDAVVKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVT  226
            +  +     A++         I  +++ AG+LRD    NM D+ W  V+   + GT+ + 
Sbjct  64   DPDAVA---ALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLH  120

Query  227  KAAWPHMLKQKYGRIVNTTSTSGIYGNFGQANYAAA  262
            +A     L       V  +S +G+ G+ GQANYAAA
Sbjct  121  EATPDEPLDF----FVLFSSIAGLLGSPGQANYAAA  152



Lambda      K        H        a         alpha
   0.316    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 726292008


Query= TCONS_00029721

Length=701
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  195     4e-59
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  153     6e-43
CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain. The maoC...  132     6e-37
CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  69.1    5e-14


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 195 bits (499),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 79/194 (41%), Positives = 120/194 (62%), Gaps = 6/194 (3%)

Query  116  KVALVTGGGNGLGRSYCLLFAKLGASVVVNDLV--DPEPVVQEIKKMGGKA---VGNKAS  170
            KVALVTG  +G+GR+     AK GA VV+ D      E V +E+  +GGKA    G+   
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  171  CEDGDAVVKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVTKAAW  230
                 A+V+ A++  GR+DILVNNAGI     F+ ++D+ W  VI+V+L G + +T+A  
Sbjct  61   RAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVL  120

Query  231  PHMLKQKYGRIVNTTSTSGIYGNFGQANYAAAKLGILGFSRALAIEGAKYNIKVNTIAPN  290
            P M+K   GRIVN +S +G+    G + Y+A+K  ++GF+R+LA+E A + I+VN +AP 
Sbjct  121  PAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVAPG  180

Query  291  A-GTNMTRTIMPEE  303
               T+MT+ +  +E
Sbjct  181  GVDTDMTKELREDE  194


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 153 bits (389),  Expect = 6e-43, Method: Composition-based stats.
 Identities = 67/219 (31%), Positives = 105/219 (48%), Gaps = 23/219 (11%)

Query  125  NGLGRSYCLLFAKLGASVVVNDLVDP-EPVVQEIKKMGGKAV--GNKASCEDGDAVVKTA  181
            +G+G +     A+ GA VV+ DL +     V+E+ +  G AV   +    E  +A+V  A
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVAAA  65

Query  182  IDAFGRIDILVNNAGILR--DKAFTNMNDDLWNAVINVHLRGTYKVTKAAWPHMLKQKYG  239
            ++ FGR+DILVNNAG        F + + + ++  ++V+L   + + KAA P M  ++ G
Sbjct  66   VEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM--KEGG  123

Query  240  RIVNTTSTSGIYGNFGQANYAAAKLGILGFSRALAIEGAKYNIKVNTIAPNAG---TNMT  296
             IVN +S            Y AAK  +   +R LA+E     I+VN I+P  G   T   
Sbjct  124  SIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAISP--GPIKTLAA  181

Query  297  RTI-MPEEMVQAF----------KPDYVAPMVALLCSDM  324
              I   +E++ A            P+ VA   A L SD+
Sbjct  182  SGIPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDL  220


>CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain.  The maoC gene 
is part of a operon with maoA which is involved in the synthesis 
of monoamine oxidase. The MaoC protein is found to share 
similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 
4, peroxisomal hydratase-dehydrogenase-epimerase, 
fatty acid synthase beta subunit. Several bacterial proteins 
that are composed solely of this domain have (R)-specific 
enoyl-CoA hydratase activity. This domain is also present 
in the NodN nodulation protein N.
Length=123

 Score = 132 bits (334),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 57/120 (48%), Gaps = 6/120 (5%)

Query  576  NPPKRQPDVVIEEKTSEDQAALYRL-NGDRNPLHIDPEFSKVGGFKTPILHGLCSLGISG  634
            N P   PD       +E   AL+ L +GD NP+H+DPEF+K  GF  PI HG+ +L I  
Sbjct  4    NAPGEPPDTEKPRTVTEADIALFALVSGDHNPIHVDPEFAKKAGFGGPIAHGMLTLAIVA  63

Query  635  KHVFNKFG-----AFKSLKVRFAGVVLPGQTLKTEMWKEGNTVIFQTTVVETGKPAILGA  689
              V    G      F  +KVRF   V PG TL+TE    G     QT VVE        A
Sbjct  64   GLVEEWGGDNVIARFGEIKVRFTKPVFPGDTLRTEAEVVGKRDGRQTKVVEVTVEVTEVA  123


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 69.1 bits (170),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 71/156 (46%), Gaps = 19/156 (12%)

Query  119  LVTGGGNGLGRSYCLLFAKLGASVVV----NDLVDPEPV--VQEIKKMGGKA------VG  166
            L+TGG  GLGR      A+ GA  +V    +    P+    + E++  G +       V 
Sbjct  4    LITGGLGGLGRELARWLAERGARHLVLLSRSAAPRPDAQALIAELEARGVEVVVVACDVS  63

Query  167  NKASCEDGDAVVKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVT  226
            +  +     A++         I  +++ AG+LRD    NM D+ W  V+   + GT+ + 
Sbjct  64   DPDAVA---ALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLH  120

Query  227  KAAWPHMLKQKYGRIVNTTSTSGIYGNFGQANYAAA  262
            +A     L       V  +S +G+ G+ GQANYAAA
Sbjct  121  EATPDEPLDF----FVLFSSIAGLLGSPGQANYAAA  152



Lambda      K        H        a         alpha
   0.316    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 896672320


Query= TCONS_00029722

Length=701
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  195     4e-59
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  153     6e-43
CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain. The maoC...  132     6e-37
CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  69.1    5e-14


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 195 bits (499),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 79/194 (41%), Positives = 120/194 (62%), Gaps = 6/194 (3%)

Query  116  KVALVTGGGNGLGRSYCLLFAKLGASVVVNDLV--DPEPVVQEIKKMGGKA---VGNKAS  170
            KVALVTG  +G+GR+     AK GA VV+ D      E V +E+  +GGKA    G+   
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  171  CEDGDAVVKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVTKAAW  230
                 A+V+ A++  GR+DILVNNAGI     F+ ++D+ W  VI+V+L G + +T+A  
Sbjct  61   RAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVL  120

Query  231  PHMLKQKYGRIVNTTSTSGIYGNFGQANYAAAKLGILGFSRALAIEGAKYNIKVNTIAPN  290
            P M+K   GRIVN +S +G+    G + Y+A+K  ++GF+R+LA+E A + I+VN +AP 
Sbjct  121  PAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVAPG  180

Query  291  A-GTNMTRTIMPEE  303
               T+MT+ +  +E
Sbjct  181  GVDTDMTKELREDE  194


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 153 bits (389),  Expect = 6e-43, Method: Composition-based stats.
 Identities = 67/219 (31%), Positives = 105/219 (48%), Gaps = 23/219 (11%)

Query  125  NGLGRSYCLLFAKLGASVVVNDLVDP-EPVVQEIKKMGGKAV--GNKASCEDGDAVVKTA  181
            +G+G +     A+ GA VV+ DL +     V+E+ +  G AV   +    E  +A+V  A
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVAAA  65

Query  182  IDAFGRIDILVNNAGILR--DKAFTNMNDDLWNAVINVHLRGTYKVTKAAWPHMLKQKYG  239
            ++ FGR+DILVNNAG        F + + + ++  ++V+L   + + KAA P M  ++ G
Sbjct  66   VEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM--KEGG  123

Query  240  RIVNTTSTSGIYGNFGQANYAAAKLGILGFSRALAIEGAKYNIKVNTIAPNAG---TNMT  296
             IVN +S            Y AAK  +   +R LA+E     I+VN I+P  G   T   
Sbjct  124  SIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAISP--GPIKTLAA  181

Query  297  RTI-MPEEMVQAF----------KPDYVAPMVALLCSDM  324
              I   +E++ A            P+ VA   A L SD+
Sbjct  182  SGIPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDL  220


>CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain.  The maoC gene 
is part of a operon with maoA which is involved in the synthesis 
of monoamine oxidase. The MaoC protein is found to share 
similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 
4, peroxisomal hydratase-dehydrogenase-epimerase, 
fatty acid synthase beta subunit. Several bacterial proteins 
that are composed solely of this domain have (R)-specific 
enoyl-CoA hydratase activity. This domain is also present 
in the NodN nodulation protein N.
Length=123

 Score = 132 bits (334),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 57/120 (48%), Gaps = 6/120 (5%)

Query  576  NPPKRQPDVVIEEKTSEDQAALYRL-NGDRNPLHIDPEFSKVGGFKTPILHGLCSLGISG  634
            N P   PD       +E   AL+ L +GD NP+H+DPEF+K  GF  PI HG+ +L I  
Sbjct  4    NAPGEPPDTEKPRTVTEADIALFALVSGDHNPIHVDPEFAKKAGFGGPIAHGMLTLAIVA  63

Query  635  KHVFNKFG-----AFKSLKVRFAGVVLPGQTLKTEMWKEGNTVIFQTTVVETGKPAILGA  689
              V    G      F  +KVRF   V PG TL+TE    G     QT VVE        A
Sbjct  64   GLVEEWGGDNVIARFGEIKVRFTKPVFPGDTLRTEAEVVGKRDGRQTKVVEVTVEVTEVA  123


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 69.1 bits (170),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 71/156 (46%), Gaps = 19/156 (12%)

Query  119  LVTGGGNGLGRSYCLLFAKLGASVVV----NDLVDPEPV--VQEIKKMGGKA------VG  166
            L+TGG  GLGR      A+ GA  +V    +    P+    + E++  G +       V 
Sbjct  4    LITGGLGGLGRELARWLAERGARHLVLLSRSAAPRPDAQALIAELEARGVEVVVVACDVS  63

Query  167  NKASCEDGDAVVKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVT  226
            +  +     A++         I  +++ AG+LRD    NM D+ W  V+   + GT+ + 
Sbjct  64   DPDAVA---ALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLH  120

Query  227  KAAWPHMLKQKYGRIVNTTSTSGIYGNFGQANYAAA  262
            +A     L       V  +S +G+ G+ GQANYAAA
Sbjct  121  EATPDEPLDF----FVLFSSIAGLLGSPGQANYAAA  152



Lambda      K        H        a         alpha
   0.316    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 896672320


Query= TCONS_00034550

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  184     2e-56
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  136     9e-38
CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  76.1    1e-16


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 184 bits (469),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 78/188 (41%), Positives = 117/188 (62%), Gaps = 6/188 (3%)

Query  306  KVALVTGGGNGLGRSYCLLFAKLGASVVVND--LVDPEPVVQEIKKMGGKA---VGNKAS  360
            KVALVTG  +G+GR+     AK GA VV+ D      E V +E+  +GGKA    G+   
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  361  CEDGDAVVKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVTKAAW  420
                 A+V+ A++  GR+DILVNNAGI     F+ ++D+ W  VI+V+L G + +T+A  
Sbjct  61   RAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVL  120

Query  421  PHMLKQKYGRIVNTTSTSGIYGNFGQANYAAAKLGILGFSRALAIEGAKYNIKVNTIAPN  480
            P M+K   GRIVN +S +G+    G + Y+A+K  ++GF+R+LA+E A + I+VN +AP 
Sbjct  121  PAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVAPG  180

Query  481  A-GTNMTR  487
               T+MT+
Sbjct  181  GVDTDMTK  188


 Score = 165 bits (419),  Expect = 4e-49, Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 107/206 (52%), Gaps = 19/206 (9%)

Query  9    QTVVVTGAGGGLGKAYATFFASRGANVVVNDLGVSHSGEGASSKAADVVVEEIRAAGGKA  68
            +  +VTGA  G+G+A A   A  GA VV+ D          S +  + V +E+ A GGKA
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDR---------SEEKLEAVAKELGALGGKA  51

Query  69   ------VANYDSVENGEAIIETAIKNFGRIDVLINNAGILRDVSFKNMKDQDWDLINKVH  122
                  V +   V+   A++E A++  GR+D+L+NNAGI     F  + D+DW+ +  V+
Sbjct  52   LFIQGDVTDRAQVK---ALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVN  108

Query  123  TYGAYKCARAAWPHFRKQKYGRIINTASAAGLFGNFGQANYSAAKLGQVGFTETLAKEGA  182
              G +   RA  P   K   GRI+N +S AGL    G + YSA+K   +GFT +LA E A
Sbjct  109  LTGVFNLTRAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELA  168

Query  183  KYNIIANVIAP-IAASRMTATIMPPE  207
             + I  N +AP    + MT  +   E
Sbjct  169  PHGIRVNAVAPGGVDTDMTKELREDE  194


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 136 bits (345),  Expect = 9e-38, Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 88/170 (52%), Gaps = 7/170 (4%)

Query  315  NGLGRSYCLLFAKLGASVVVNDLVDPE-PVVQEIKKMGGKAV--GNKASCEDGDAVVKTA  371
            +G+G +     A+ GA VV+ DL +     V+E+ +  G AV   +    E  +A+V  A
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVAAA  65

Query  372  IDAFGRIDILVNNAGILR--DKAFTNMNDDLWNAVINVHLRGTYKVTKAAWPHMLKQKYG  429
            ++ FGR+DILVNNAG        F + + + ++  ++V+L   + + KAA P M  ++ G
Sbjct  66   VEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM--KEGG  123

Query  430  RIVNTTSTSGIYGNFGQANYAAAKLGILGFSRALAIEGAKYNIKVNTIAP  479
             IVN +S            Y AAK  +   +R LA+E     I+VN I+P
Sbjct  124  SIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAISP  173


 Score = 119 bits (300),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 56/182 (31%), Positives = 81/182 (45%), Gaps = 22/182 (12%)

Query  19   GLGKAYATFFASRGANVVVNDLGVSHSGEGASSKAADVVVEEIRAAGGKA-----VANYD  73
            G+G A A   A  GA VV+ DL           +A    VEE+    G A     V + +
Sbjct  7    GIGWAIARALAEEGAEVVLTDLN----------EALAKRVEELAEELGAAVLPCDVTDEE  56

Query  74   SVENGEAIIETAIKNFGRIDVLINNAGILRDV--SFKNMKDQDWDLINKVHTYGAYKCAR  131
             VE   A++  A++ FGR+D+L+NNAG    +   F +   +D+D    V+ Y  +  A+
Sbjct  57   QVE---ALVAAAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAK  113

Query  132  AAWPHFRKQKYGRIINTASAAGLFGNFGQANYSAAKLGQVGFTETLAKEGAKYNIIANVI  191
            AA P  ++   G I+N +S            Y AAK      T  LA E     I  N I
Sbjct  114  AALPLMKEG--GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAI  171

Query  192  AP  193
            +P
Sbjct  172  SP  173


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 76.1 bits (188),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 24/166 (14%)

Query  10   TVVVTGAGGGLGKAYATFFASRGA-NVVVNDLGVSHSGEGASSKAADVVVEEIRAAGGKA  68
            T ++TG  GGLG+  A + A RGA ++V+    +S S   A    A  ++ E+ A G + 
Sbjct  2    TYLITGGLGGLGRELARWLAERGARHLVL----LSRSA--APRPDAQALIAELEARGVEV  55

Query  69   ------VANYDSVENGEAIIETAIKNFGRIDVLINNAGILRDVSFKNMKDQDWDLINKVH  122
                  V++ D+V    A++         I  +I+ AG+LRD   +NM D+DW       
Sbjct  56   VVVACDVSDPDAVA---ALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWR-----R  107

Query  123  TYGAYKCARAAWPH--FRKQKYGRIINTASAAGLFGNFGQANYSAA  166
                 K       H     +     +  +S AGL G+ GQANY+AA
Sbjct  108  VLAP-KVTGTWNLHEATPDEPLDFFVLFSSIAGLLGSPGQANYAAA  152


 Score = 65.7 bits (161),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 47/153 (31%), Positives = 71/153 (46%), Gaps = 13/153 (8%)

Query  309  LVTGGGNGLGRSYCLLFAKLGASVVV----NDLVDPEPV--VQEIKKMGGKAVGNKASCE  362
            L+TGG  GLGR      A+ GA  +V    +    P+    + E++  G + V       
Sbjct  4    LITGGLGGLGRELARWLAERGARHLVLLSRSAAPRPDAQALIAELEARGVEVVVVACDVS  63

Query  363  DGDAV---VKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVTKAA  419
            D DAV   +         I  +++ AG+LRD    NM D+ W  V+   + GT+ + +A 
Sbjct  64   DPDAVAALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLHEAT  123

Query  420  WPHMLKQKYGRIVNTTSTSGIYGNFGQANYAAA  452
                L       V  +S +G+ G+ GQANYAAA
Sbjct  124  PDEPLDF----FVLFSSIAGLLGSPGQANYAAA  152



Lambda      K        H        a         alpha
   0.316    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0751    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00029723

Length=790
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  195     2e-58
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  151     3e-42
CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain. The maoC...  132     6e-37
CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  68.7    7e-14


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 195 bits (497),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 79/194 (41%), Positives = 120/194 (62%), Gaps = 6/194 (3%)

Query  205  KVALVTGGGNGLGRSYCLLFAKLGASVVVNDLV--DPEPVVQEIKKMGGKA---VGNKAS  259
            KVALVTG  +G+GR+     AK GA VV+ D      E V +E+  +GGKA    G+   
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  260  CEDGDAVVKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVTKAAW  319
                 A+V+ A++  GR+DILVNNAGI     F+ ++D+ W  VI+V+L G + +T+A  
Sbjct  61   RAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVL  120

Query  320  PHMLKQKYGRIVNTTSTSGIYGNFGQANYAAAKLGILGFSRALAIEGAKYNIKVNTIAPN  379
            P M+K   GRIVN +S +G+    G + Y+A+K  ++GF+R+LA+E A + I+VN +AP 
Sbjct  121  PAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVAPG  180

Query  380  A-GTNMTRTIMPEE  392
               T+MT+ +  +E
Sbjct  181  GVDTDMTKELREDE  194


 Score = 91.9 bits (229),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 52/99 (53%), Gaps = 1/99 (1%)

Query  1    MKDQDWDLINKVHTYGAYKCARAAWPHFRKQKYGRIINTASAAGLFGNFGQANYSAAKLG  60
            + D+DW+ +  V+  G +   RA  P   K   GRI+N +S AGL    G + YSA+K  
Sbjct  96   LSDEDWERVIDVNLTGVFNLTRAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAA  155

Query  61   QVGFTETLAKEGAKYNIIANVIAP-IAASRMTATIMPPE  98
             +GFT +LA E A + I  N +AP    + MT  +   E
Sbjct  156  VIGFTRSLALELAPHGIRVNAVAPGGVDTDMTKELREDE  194


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 151 bits (385),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 67/219 (31%), Positives = 105/219 (48%), Gaps = 23/219 (11%)

Query  214  NGLGRSYCLLFAKLGASVVVNDLVDPE-PVVQEIKKMGGKAV--GNKASCEDGDAVVKTA  270
            +G+G +     A+ GA VV+ DL +     V+E+ +  G AV   +    E  +A+V  A
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVAAA  65

Query  271  IDAFGRIDILVNNAGILR--DKAFTNMNDDLWNAVINVHLRGTYKVTKAAWPHMLKQKYG  328
            ++ FGR+DILVNNAG        F + + + ++  ++V+L   + + KAA P M  ++ G
Sbjct  66   VEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM--KEGG  123

Query  329  RIVNTTSTSGIYGNFGQANYAAAKLGILGFSRALAIEGAKYNIKVNTIAPNAG---TNMT  385
             IVN +S            Y AAK  +   +R LA+E     I+VN I+P  G   T   
Sbjct  124  SIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAISP--GPIKTLAA  181

Query  386  RTI-MPEEMVQAF----------KPDYVAPMVALLCSDM  413
              I   +E++ A            P+ VA   A L SD+
Sbjct  182  SGIPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDL  220


 Score = 73.2 bits (181),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 24/84 (29%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query  1    MKDQDWDLINKVHTYGAYKCARAAWPHFRKQKYGRIINTASAAGLFGNFGQANYSAAKLG  60
               +D+D    V+ Y  +  A+AA P  ++   G I+N +S            Y AAK  
Sbjct  92   TSREDFDRALDVNLYSLFLLAKAALPLMKEG--GSIVNLSSIGAERVVPNYNAYGAAKAA  149

Query  61   QVGFTETLAKEGAKYNIIANVIAP  84
                T  LA E     I  N I+P
Sbjct  150  LEALTRYLAVELGPRGIRVNAISP  173


>CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain.  The maoC gene 
is part of a operon with maoA which is involved in the synthesis 
of monoamine oxidase. The MaoC protein is found to share 
similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 
4, peroxisomal hydratase-dehydrogenase-epimerase, 
fatty acid synthase beta subunit. Several bacterial proteins 
that are composed solely of this domain have (R)-specific 
enoyl-CoA hydratase activity. This domain is also present 
in the NodN nodulation protein N.
Length=123

 Score = 132 bits (335),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 57/120 (48%), Gaps = 6/120 (5%)

Query  665  NPPKRQPDVVIEEKTSEDQAALYRL-NGDRNPLHIDPEFSKVGGFKTPILHGLCSLGISG  723
            N P   PD       +E   AL+ L +GD NP+H+DPEF+K  GF  PI HG+ +L I  
Sbjct  4    NAPGEPPDTEKPRTVTEADIALFALVSGDHNPIHVDPEFAKKAGFGGPIAHGMLTLAIVA  63

Query  724  KHVFNKFG-----AFKSLKVRFAGVVLPGQTLKTEMWKEGNTVIFQTTVVETGKPAILGA  778
              V    G      F  +KVRF   V PG TL+TE    G     QT VVE        A
Sbjct  64   GLVEEWGGDNVIARFGEIKVRFTKPVFPGDTLRTEAEVVGKRDGRQTKVVEVTVEVTEVA  123


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 68.7 bits (169),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 71/156 (46%), Gaps = 19/156 (12%)

Query  208  LVTGGGNGLGRSYCLLFAKLGASVVV----NDLVDPEPV--VQEIKKMGGKA------VG  255
            L+TGG  GLGR      A+ GA  +V    +    P+    + E++  G +       V 
Sbjct  4    LITGGLGGLGRELARWLAERGARHLVLLSRSAAPRPDAQALIAELEARGVEVVVVACDVS  63

Query  256  NKASCEDGDAVVKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVT  315
            +  +     A++         I  +++ AG+LRD    NM D+ W  V+   + GT+ + 
Sbjct  64   DPDAVA---ALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLH  120

Query  316  KAAWPHMLKQKYGRIVNTTSTSGIYGNFGQANYAAA  351
            +A     L       V  +S +G+ G+ GQANYAAA
Sbjct  121  EATPDEPLDF----FVLFSSIAGLLGSPGQANYAAA  152



Lambda      K        H        a         alpha
   0.316    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1012785792


Query= TCONS_00034551

Length=577
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  188     3e-57
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  146     8e-41
CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  77.6    4e-17


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 188 bits (480),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 79/194 (41%), Positives = 120/194 (62%), Gaps = 6/194 (3%)

Query  240  KVALVTGGGNGLGRSYCLLFAKLGASVVVNDLV--DPEPVVQEIKKMGGKA---VGNKAS  294
            KVALVTG  +G+GR+     AK GA VV+ D      E V +E+  +GGKA    G+   
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  295  CEDGDAVVKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVTKAAW  354
                 A+V+ A++  GR+DILVNNAGI     F+ ++D+ W  VI+V+L G + +T+A  
Sbjct  61   RAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVL  120

Query  355  PHMLKQKYGRIVNTTSTSGIYGNFGQANYAAAKLGILGFSRALAIEGAKYNIKVNTIAPN  414
            P M+K   GRIVN +S +G+    G + Y+A+K  ++GF+R+LA+E A + I+VN +AP 
Sbjct  121  PAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVAPG  180

Query  415  A-GTNMTRTIMPEE  427
               T+MT+ +  +E
Sbjct  181  GVDTDMTKELREDE  194


 Score = 168 bits (427),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 107/206 (52%), Gaps = 19/206 (9%)

Query  9    QTVVVTGAGGGLGKAYATFFASRGANVVVNDLGVSHSGEGASSKAADVVVEEIRAAGGKA  68
            +  +VTGA  G+G+A A   A  GA VV+ D          S +  + V +E+ A GGKA
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDR---------SEEKLEAVAKELGALGGKA  51

Query  69   ------VANYDSVENGEAIIETAIKNFGRIDVLINNAGILRDVSFKNMKDQDWDLINKVH  122
                  V +   V+   A++E A++  GR+D+L+NNAGI     F  + D+DW+ +  V+
Sbjct  52   LFIQGDVTDRAQVK---ALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVN  108

Query  123  TYGAYKCARAAWPHFRKQKYGRIINTASAAGLFGNFGQANYSAAKLGQVGFTETLAKEGA  182
              G +   RA  P   K   GRI+N +S AGL    G + YSA+K   +GFT +LA E A
Sbjct  109  LTGVFNLTRAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELA  168

Query  183  KYNIIANVIAP-IAASRMTATIMPPE  207
             + I  N +AP    + MT  +   E
Sbjct  169  PHGIRVNAVAPGGVDTDMTKELREDE  194


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 146 bits (370),  Expect = 8e-41, Method: Composition-based stats.
 Identities = 66/217 (30%), Positives = 104/217 (48%), Gaps = 19/217 (9%)

Query  249  NGLGRSYCLLFAKLGASVVVNDLVDP-EPVVQEIKKMGGKAV--GNKASCEDGDAVVKTA  305
            +G+G +     A+ GA VV+ DL +     V+E+ +  G AV   +    E  +A+V  A
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVAAA  65

Query  306  IDAFGRIDILVNNAGILR--DKAFTNMNDDLWNAVINVHLRGTYKVTKAAWPHMLKQKYG  363
            ++ FGR+DILVNNAG        F + + + ++  ++V+L   + + KAA P M  ++ G
Sbjct  66   VEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM--KEGG  123

Query  364  RIVNTTSTSGIYGNFGQANYAAAKLGILGFSRALAIEGAKYNIKVNTIAPNA-GTNMTRT  422
             IVN +S            Y AAK  +   +R LA+E     I+VN I+P    T     
Sbjct  124  SIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAISPGPIKTLAASG  183

Query  423  I-MPEEMVQAF----------KPDYVAPMVALLCSDM  448
            I   +E++ A            P+ VA   A L SD+
Sbjct  184  IPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDL  220


 Score = 122 bits (308),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 56/182 (31%), Positives = 81/182 (45%), Gaps = 22/182 (12%)

Query  19   GLGKAYATFFASRGANVVVNDLGVSHSGEGASSKAADVVVEEIRAAGGKA-----VANYD  73
            G+G A A   A  GA VV+ DL           +A    VEE+    G A     V + +
Sbjct  7    GIGWAIARALAEEGAEVVLTDLN----------EALAKRVEELAEELGAAVLPCDVTDEE  56

Query  74   SVENGEAIIETAIKNFGRIDVLINNAGILRDV--SFKNMKDQDWDLINKVHTYGAYKCAR  131
             VE   A++  A++ FGR+D+L+NNAG    +   F +   +D+D    V+ Y  +  A+
Sbjct  57   QVE---ALVAAAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAK  113

Query  132  AAWPHFRKQKYGRIINTASAAGLFGNFGQANYSAAKLGQVGFTETLAKEGAKYNIIANVI  191
            AA P  ++   G I+N +S            Y AAK      T  LA E     I  N I
Sbjct  114  AALPLMKEG--GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAI  171

Query  192  AP  193
            +P
Sbjct  172  SP  173


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 77.6 bits (192),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 24/166 (14%)

Query  10   TVVVTGAGGGLGKAYATFFASRGA-NVVVNDLGVSHSGEGASSKAADVVVEEIRAAGGKA  68
            T ++TG  GGLG+  A + A RGA ++V+    +S S   A    A  ++ E+ A G + 
Sbjct  2    TYLITGGLGGLGRELARWLAERGARHLVL----LSRSA--APRPDAQALIAELEARGVEV  55

Query  69   ------VANYDSVENGEAIIETAIKNFGRIDVLINNAGILRDVSFKNMKDQDWDLINKVH  122
                  V++ D+V    A++         I  +I+ AG+LRD   +NM D+DW       
Sbjct  56   VVVACDVSDPDAVA---ALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWR-----R  107

Query  123  TYGAYKCARAAWPH--FRKQKYGRIINTASAAGLFGNFGQANYSAA  166
                 K       H     +     +  +S AGL G+ GQANY+AA
Sbjct  108  VLAP-KVTGTWNLHEATPDEPLDFFVLFSSIAGLLGSPGQANYAAA  152


 Score = 66.8 bits (164),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 47/153 (31%), Positives = 71/153 (46%), Gaps = 13/153 (8%)

Query  243  LVTGGGNGLGRSYCLLFAKLGASVVV----NDLVDPEPV--VQEIKKMGGKAVGNKASCE  296
            L+TGG  GLGR      A+ GA  +V    +    P+    + E++  G + V       
Sbjct  4    LITGGLGGLGRELARWLAERGARHLVLLSRSAAPRPDAQALIAELEARGVEVVVVACDVS  63

Query  297  DGDAV---VKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVTKAA  353
            D DAV   +         I  +++ AG+LRD    NM D+ W  V+   + GT+ + +A 
Sbjct  64   DPDAVAALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLHEAT  123

Query  354  WPHMLKQKYGRIVNTTSTSGIYGNFGQANYAAA  386
                L       V  +S +G+ G+ GQANYAAA
Sbjct  124  PDEPLDF----FVLFSSIAGLLGSPGQANYAAA  152



Lambda      K        H        a         alpha
   0.316    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 724797580


Query= TCONS_00034552

Length=509
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  157     6e-46
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  110     4e-28
CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  71.8    4e-15


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 157 bits (399),  Expect = 6e-46, Method: Composition-based stats.
 Identities = 73/222 (33%), Positives = 107/222 (48%), Gaps = 35/222 (16%)

Query  9    QTVVVTGAGGGLGKAYATFFASRGANVVVNDLGVSHSGEGASSKAADVVVEEIRAAGGKA  68
            +  +VTGA  G+G+A A   A  GA VV+ D          S +  + V +E+ A GGKA
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDR---------SEEKLEAVAKELGALGGKA  51

Query  69   ------VANYDSVENGEAIIETAIKNFGRIDVLINNAGILRDVSFKNMKDQDWDLINKVH  122
                  V +   V+   A++E A++  GR+D+L+NNAGI     F  + D+DW+ +  V+
Sbjct  52   LFIQGDVTDRAQVK---ALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVN  108

Query  123  TYGAYKCARAAWPHFRKQKYGRIINTASAAGLFGNFGQANYSGELLIADTVTEANDSEAA  182
              G +   RA  P   K   GRI+N +S AGL    G + YS                A+
Sbjct  109  LTGVFNLTRAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYS----------------AS  152

Query  183  KLGQVGFTETLAKEGAKYNIIANVIAP-IAASRMTATIMPPE  223
            K   +GFT +LA E A + I  N +AP    + MT  +   E
Sbjct  153  KAAVIGFTRSLALELAPHGIRVNAVAPGGVDTDMTKELREDE  194


 Score = 151 bits (383),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 62/152 (41%), Positives = 91/152 (60%), Gaps = 5/152 (3%)

Query  330  KVALVTGGGNGLGRSYCLLFAKLGASVVVNDLV--DPEPVVQEIKKMGGKA---VGNKAS  384
            KVALVTG  +G+GR+     AK GA VV+ D      E V +E+  +GGKA    G+   
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  385  CEDGDAVVKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVTKAAW  444
                 A+V+ A++  GR+DILVNNAGI     F+ ++D+ W  VI+V+L G + +T+A  
Sbjct  61   RAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVL  120

Query  445  PHMLKQKYGRIVNTTSTSGIYGNFGQANYAAA  476
            P M+K   GRIVN +S +G+    G + Y+A+
Sbjct  121  PAMIKGSGGRIVNISSVAGLVPYPGGSAYSAS  152


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 110 bits (277),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 81/198 (41%), Gaps = 38/198 (19%)

Query  19   GLGKAYATFFASRGANVVVNDLGVSHSGEGASSKAADVVVEEIRAAGGKA-----VANYD  73
            G+G A A   A  GA VV+ DL           +A    VEE+    G A     V + +
Sbjct  7    GIGWAIARALAEEGAEVVLTDLN----------EALAKRVEELAEELGAAVLPCDVTDEE  56

Query  74   SVENGEAIIETAIKNFGRIDVLINNAGILRDV--SFKNMKDQDWDLINKVHTYGAYKCAR  131
             VE   A++  A++ FGR+D+L+NNAG    +   F +   +D+D    V+ Y  +  A+
Sbjct  57   QVE---ALVAAAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAK  113

Query  132  AAWPHFRKQKYGRIINTASAAGLFGNFGQANYSGELLIADTVTEANDSEAAKLGQVGFTE  191
            AA P  ++   G I+N +S            Y                 AAK      T 
Sbjct  114  AALPLMKEG--GSIVNLSSIGAERVVPNYNAYG----------------AAKAALEALTR  155

Query  192  TLAKEGAKYNIIANVIAP  209
             LA E     I  N I+P
Sbjct  156  YLAVELGPRGIRVNAISP  173


 Score = 105 bits (266),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 7/143 (5%)

Query  339  NGLGRSYCLLFAKLGASVVVNDLVDP-EPVVQEIKKMGGKAV--GNKASCEDGDAVVKTA  395
            +G+G +     A+ GA VV+ DL +     V+E+ +  G AV   +    E  +A+V  A
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVAAA  65

Query  396  IDAFGRIDILVNNAGILR--DKAFTNMNDDLWNAVINVHLRGTYKVTKAAWPHMLKQKYG  453
            ++ FGR+DILVNNAG        F + + + ++  ++V+L   + + KAA P M  ++ G
Sbjct  66   VEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM--KEGG  123

Query  454  RIVNTTSTSGIYGNFGQANYAAA  476
             IVN +S            Y AA
Sbjct  124  SIVNLSSIGAERVVPNYNAYGAA  146


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 71.8 bits (177),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 75/164 (46%), Gaps = 24/164 (15%)

Query  10   TVVVTGAGGGLGKAYATFFASRGA-NVVVNDLGVSHSGEGASSKAADVVVEEIRAAGGKA  68
            T ++TG  GGLG+  A + A RGA ++V+    +S S   A    A  ++ E+ A G + 
Sbjct  2    TYLITGGLGGLGRELARWLAERGARHLVL----LSRSA--APRPDAQALIAELEARGVEV  55

Query  69   ------VANYDSVENGEAIIETAIKNFGRIDVLINNAGILRDVSFKNMKDQDWDLINKVH  122
                  V++ D+V    A++         I  +I+ AG+LRD   +NM D+DW       
Sbjct  56   VVVACDVSDPDAVA---ALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWR-----R  107

Query  123  TYGAYKCARAAWPH--FRKQKYGRIINTASAAGLFGNFGQANYS  164
                 K       H     +     +  +S AGL G+ GQANY+
Sbjct  108  VLAP-KVTGTWNLHEATPDEPLDFFVLFSSIAGLLGSPGQANYA  150


 Score = 66.0 bits (162),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 47/153 (31%), Positives = 71/153 (46%), Gaps = 13/153 (8%)

Query  333  LVTGGGNGLGRSYCLLFAKLGASVVV----NDLVDPEPV--VQEIKKMGGKAVGNKASCE  386
            L+TGG  GLGR      A+ GA  +V    +    P+    + E++  G + V       
Sbjct  4    LITGGLGGLGRELARWLAERGARHLVLLSRSAAPRPDAQALIAELEARGVEVVVVACDVS  63

Query  387  DGDAV---VKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVTKAA  443
            D DAV   +         I  +++ AG+LRD    NM D+ W  V+   + GT+ + +A 
Sbjct  64   DPDAVAALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLHEAT  123

Query  444  WPHMLKQKYGRIVNTTSTSGIYGNFGQANYAAA  476
                L       V  +S +G+ G+ GQANYAAA
Sbjct  124  PDEPLDF----FVLFSSIAGLLGSPGQANYAAA  152



Lambda      K        H        a         alpha
   0.316    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 632879588


Query= TCONS_00029724

Length=701
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  195     4e-59
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  153     6e-43
CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain. The maoC...  132     6e-37
CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  69.1    5e-14


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 195 bits (499),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 79/194 (41%), Positives = 120/194 (62%), Gaps = 6/194 (3%)

Query  116  KVALVTGGGNGLGRSYCLLFAKLGASVVVNDLV--DPEPVVQEIKKMGGKA---VGNKAS  170
            KVALVTG  +G+GR+     AK GA VV+ D      E V +E+  +GGKA    G+   
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  171  CEDGDAVVKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVTKAAW  230
                 A+V+ A++  GR+DILVNNAGI     F+ ++D+ W  VI+V+L G + +T+A  
Sbjct  61   RAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVL  120

Query  231  PHMLKQKYGRIVNTTSTSGIYGNFGQANYAAAKLGILGFSRALAIEGAKYNIKVNTIAPN  290
            P M+K   GRIVN +S +G+    G + Y+A+K  ++GF+R+LA+E A + I+VN +AP 
Sbjct  121  PAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVAPG  180

Query  291  A-GTNMTRTIMPEE  303
               T+MT+ +  +E
Sbjct  181  GVDTDMTKELREDE  194


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 153 bits (389),  Expect = 6e-43, Method: Composition-based stats.
 Identities = 67/219 (31%), Positives = 105/219 (48%), Gaps = 23/219 (11%)

Query  125  NGLGRSYCLLFAKLGASVVVNDLVDP-EPVVQEIKKMGGKAV--GNKASCEDGDAVVKTA  181
            +G+G +     A+ GA VV+ DL +     V+E+ +  G AV   +    E  +A+V  A
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVAAA  65

Query  182  IDAFGRIDILVNNAGILR--DKAFTNMNDDLWNAVINVHLRGTYKVTKAAWPHMLKQKYG  239
            ++ FGR+DILVNNAG        F + + + ++  ++V+L   + + KAA P M  ++ G
Sbjct  66   VEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM--KEGG  123

Query  240  RIVNTTSTSGIYGNFGQANYAAAKLGILGFSRALAIEGAKYNIKVNTIAPNAG---TNMT  296
             IVN +S            Y AAK  +   +R LA+E     I+VN I+P  G   T   
Sbjct  124  SIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAISP--GPIKTLAA  181

Query  297  RTI-MPEEMVQAF----------KPDYVAPMVALLCSDM  324
              I   +E++ A            P+ VA   A L SD+
Sbjct  182  SGIPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDL  220


>CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain.  The maoC gene 
is part of a operon with maoA which is involved in the synthesis 
of monoamine oxidase. The MaoC protein is found to share 
similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 
4, peroxisomal hydratase-dehydrogenase-epimerase, 
fatty acid synthase beta subunit. Several bacterial proteins 
that are composed solely of this domain have (R)-specific 
enoyl-CoA hydratase activity. This domain is also present 
in the NodN nodulation protein N.
Length=123

 Score = 132 bits (334),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 57/120 (48%), Gaps = 6/120 (5%)

Query  576  NPPKRQPDVVIEEKTSEDQAALYRL-NGDRNPLHIDPEFSKVGGFKTPILHGLCSLGISG  634
            N P   PD       +E   AL+ L +GD NP+H+DPEF+K  GF  PI HG+ +L I  
Sbjct  4    NAPGEPPDTEKPRTVTEADIALFALVSGDHNPIHVDPEFAKKAGFGGPIAHGMLTLAIVA  63

Query  635  KHVFNKFG-----AFKSLKVRFAGVVLPGQTLKTEMWKEGNTVIFQTTVVETGKPAILGA  689
              V    G      F  +KVRF   V PG TL+TE    G     QT VVE        A
Sbjct  64   GLVEEWGGDNVIARFGEIKVRFTKPVFPGDTLRTEAEVVGKRDGRQTKVVEVTVEVTEVA  123


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 69.1 bits (170),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 71/156 (46%), Gaps = 19/156 (12%)

Query  119  LVTGGGNGLGRSYCLLFAKLGASVVV----NDLVDPEPV--VQEIKKMGGKA------VG  166
            L+TGG  GLGR      A+ GA  +V    +    P+    + E++  G +       V 
Sbjct  4    LITGGLGGLGRELARWLAERGARHLVLLSRSAAPRPDAQALIAELEARGVEVVVVACDVS  63

Query  167  NKASCEDGDAVVKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVT  226
            +  +     A++         I  +++ AG+LRD    NM D+ W  V+   + GT+ + 
Sbjct  64   DPDAVA---ALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLH  120

Query  227  KAAWPHMLKQKYGRIVNTTSTSGIYGNFGQANYAAA  262
            +A     L       V  +S +G+ G+ GQANYAAA
Sbjct  121  EATPDEPLDF----FVLFSSIAGLLGSPGQANYAAA  152



Lambda      K        H        a         alpha
   0.316    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 896672320


Query= TCONS_00034553

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  167     6e-50
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  120     6e-32
CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  76.4    8e-17


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 167 bits (425),  Expect = 6e-50, Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 107/206 (52%), Gaps = 19/206 (9%)

Query  9    QTVVVTGAGGGLGKAYATFFASRGANVVVNDLGVSHSGEGASSKAADVVVEEIRAAGGKA  68
            +  +VTGA  G+G+A A   A  GA VV+ D          S +  + V +E+ A GGKA
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDR---------SEEKLEAVAKELGALGGKA  51

Query  69   ------VANYDSVENGEAIIETAIKNFGRIDVLINNAGILRDVSFKNMKDQDWDLINKVH  122
                  V +   V+   A++E A++  GR+D+L+NNAGI     F  + D+DW+ +  V+
Sbjct  52   LFIQGDVTDRAQVK---ALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVN  108

Query  123  TYGAYKCARAAWPHFRKQKYGRIINTASAAGLFGNFGQANYSAAKLGQVGFTETLAKEGA  182
              G +   RA  P   K   GRI+N +S AGL    G + YSA+K   +GFT +LA E A
Sbjct  109  LTGVFNLTRAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELA  168

Query  183  KYNIIANVIAP-IAASRMTATIMPPE  207
             + I  N +AP    + MT  +   E
Sbjct  169  PHGIRVNAVAPGGVDTDMTKELREDE  194


 Score = 151 bits (383),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 62/152 (41%), Positives = 91/152 (60%), Gaps = 5/152 (3%)

Query  314  KVALVTGGGNGLGRSYCLLFAKLGASVVVNDLV--DPEPVVQEIKKMGGKA---VGNKAS  368
            KVALVTG  +G+GR+     AK GA VV+ D      E V +E+  +GGKA    G+   
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  369  CEDGDAVVKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVTKAAW  428
                 A+V+ A++  GR+DILVNNAGI     F+ ++D+ W  VI+V+L G + +T+A  
Sbjct  61   RAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVL  120

Query  429  PHMLKQKYGRIVNTTSTSGIYGNFGQANYAAA  460
            P M+K   GRIVN +S +G+    G + Y+A+
Sbjct  121  PAMIKGSGGRIVNISSVAGLVPYPGGSAYSAS  152


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 120 bits (304),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 56/182 (31%), Positives = 81/182 (45%), Gaps = 22/182 (12%)

Query  19   GLGKAYATFFASRGANVVVNDLGVSHSGEGASSKAADVVVEEIRAAGGKA-----VANYD  73
            G+G A A   A  GA VV+ DL           +A    VEE+    G A     V + +
Sbjct  7    GIGWAIARALAEEGAEVVLTDLN----------EALAKRVEELAEELGAAVLPCDVTDEE  56

Query  74   SVENGEAIIETAIKNFGRIDVLINNAGILRDV--SFKNMKDQDWDLINKVHTYGAYKCAR  131
             VE   A++  A++ FGR+D+L+NNAG    +   F +   +D+D    V+ Y  +  A+
Sbjct  57   QVE---ALVAAAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAK  113

Query  132  AAWPHFRKQKYGRIINTASAAGLFGNFGQANYSAAKLGQVGFTETLAKEGAKYNIIANVI  191
            AA P  ++   G I+N +S            Y AAK      T  LA E     I  N I
Sbjct  114  AALPLMKEG--GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAI  171

Query  192  AP  193
            +P
Sbjct  172  SP  173


 Score = 105 bits (266),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 7/143 (5%)

Query  323  NGLGRSYCLLFAKLGASVVVNDLVDP-EPVVQEIKKMGGKAV--GNKASCEDGDAVVKTA  379
            +G+G +     A+ GA VV+ DL +     V+E+ +  G AV   +    E  +A+V  A
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVAAA  65

Query  380  IDAFGRIDILVNNAGILR--DKAFTNMNDDLWNAVINVHLRGTYKVTKAAWPHMLKQKYG  437
            ++ FGR+DILVNNAG        F + + + ++  ++V+L   + + KAA P M  ++ G
Sbjct  66   VEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM--KEGG  123

Query  438  RIVNTTSTSGIYGNFGQANYAAA  460
             IVN +S            Y AA
Sbjct  124  SIVNLSSIGAERVVPNYNAYGAA  146


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 76.4 bits (189),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 24/166 (14%)

Query  10   TVVVTGAGGGLGKAYATFFASRGA-NVVVNDLGVSHSGEGASSKAADVVVEEIRAAGGKA  68
            T ++TG  GGLG+  A + A RGA ++V+    +S S   A    A  ++ E+ A G + 
Sbjct  2    TYLITGGLGGLGRELARWLAERGARHLVL----LSRSA--APRPDAQALIAELEARGVEV  55

Query  69   ------VANYDSVENGEAIIETAIKNFGRIDVLINNAGILRDVSFKNMKDQDWDLINKVH  122
                  V++ D+V    A++         I  +I+ AG+LRD   +NM D+DW       
Sbjct  56   VVVACDVSDPDAVA---ALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWR-----R  107

Query  123  TYGAYKCARAAWPH--FRKQKYGRIINTASAAGLFGNFGQANYSAA  166
                 K       H     +     +  +S AGL G+ GQANY+AA
Sbjct  108  VLAP-KVTGTWNLHEATPDEPLDFFVLFSSIAGLLGSPGQANYAAA  152


 Score = 66.0 bits (162),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 47/153 (31%), Positives = 71/153 (46%), Gaps = 13/153 (8%)

Query  317  LVTGGGNGLGRSYCLLFAKLGASVVV----NDLVDPEPV--VQEIKKMGGKAVGNKASCE  370
            L+TGG  GLGR      A+ GA  +V    +    P+    + E++  G + V       
Sbjct  4    LITGGLGGLGRELARWLAERGARHLVLLSRSAAPRPDAQALIAELEARGVEVVVVACDVS  63

Query  371  DGDAV---VKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVTKAA  427
            D DAV   +         I  +++ AG+LRD    NM D+ W  V+   + GT+ + +A 
Sbjct  64   DPDAVAALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLHEAT  123

Query  428  WPHMLKQKYGRIVNTTSTSGIYGNFGQANYAAA  460
                L       V  +S +G+ G+ GQANYAAA
Sbjct  124  PDEPLDF----FVLFSSIAGLLGSPGQANYAAA  152



Lambda      K        H        a         alpha
   0.317    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00029726

Length=899
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  192     5e-57
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  149     4e-41
CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain. The maoC...  132     2e-36
CDD:430138 pfam08659, KR, KR domain. This enzymatic domain is par...  78.8    2e-17


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 192 bits (490),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 79/194 (41%), Positives = 120/194 (62%), Gaps = 6/194 (3%)

Query  314  KVALVTGGGNGLGRSYCLLFAKLGASVVVNDLV--DPEPVVQEIKKMGGKA---VGNKAS  368
            KVALVTG  +G+GR+     AK GA VV+ D      E V +E+  +GGKA    G+   
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  369  CEDGDAVVKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVTKAAW  428
                 A+V+ A++  GR+DILVNNAGI     F+ ++D+ W  VI+V+L G + +T+A  
Sbjct  61   RAQVKALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVL  120

Query  429  PHMLKQKYGRIVNTTSTSGIYGNFGQANYAAAKLGILGFSRALAIEGAKYNIKVNTIAPN  488
            P M+K   GRIVN +S +G+    G + Y+A+K  ++GF+R+LA+E A + I+VN +AP 
Sbjct  121  PAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVAPG  180

Query  489  A-GTNMTRTIMPEE  501
               T+MT+ +  +E
Sbjct  181  GVDTDMTKELREDE  194


 Score = 171 bits (436),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 107/206 (52%), Gaps = 19/206 (9%)

Query  9    QTVVVTGAGGGLGKAYATFFASRGANVVVNDLGVSHSGEGASSKAADVVVEEIRAAGGKA  68
            +  +VTGA  G+G+A A   A  GA VV+ D          S +  + V +E+ A GGKA
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDR---------SEEKLEAVAKELGALGGKA  51

Query  69   ------VANYDSVENGEAIIETAIKNFGRIDVLINNAGILRDVSFKNMKDQDWDLINKVH  122
                  V +   V+   A++E A++  GR+D+L+NNAGI     F  + D+DW+ +  V+
Sbjct  52   LFIQGDVTDRAQVK---ALVEQAVERLGRLDILVNNAGITGLGPFSELSDEDWERVIDVN  108

Query  123  TYGAYKCARAAWPHFRKQKYGRIINTASAAGLFGNFGQANYSAAKLGQVGFTETLAKEGA  182
              G +   RA  P   K   GRI+N +S AGL    G + YSA+K   +GFT +LA E A
Sbjct  109  LTGVFNLTRAVLPAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELA  168

Query  183  KYNIIANVIAP-IAASRMTATIMPPE  207
             + I  N +AP    + MT  +   E
Sbjct  169  PHGIRVNAVAPGGVDTDMTKELREDE  194


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 149 bits (379),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 67/219 (31%), Positives = 105/219 (48%), Gaps = 23/219 (11%)

Query  323  NGLGRSYCLLFAKLGASVVVNDLVDPE-PVVQEIKKMGGKAV--GNKASCEDGDAVVKTA  379
            +G+G +     A+ GA VV+ DL +     V+E+ +  G AV   +    E  +A+V  A
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAAVLPCDVTDEEQVEALVAAA  65

Query  380  IDAFGRIDILVNNAGILR--DKAFTNMNDDLWNAVINVHLRGTYKVTKAAWPHMLKQKYG  437
            ++ FGR+DILVNNAG        F + + + ++  ++V+L   + + KAA P M  ++ G
Sbjct  66   VEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKAALPLM--KEGG  123

Query  438  RIVNTTSTSGIYGNFGQANYAAAKLGILGFSRALAIEGAKYNIKVNTIAPNAG---TNMT  494
             IVN +S            Y AAK  +   +R LA+E     I+VN I+P  G   T   
Sbjct  124  SIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAISP--GPIKTLAA  181

Query  495  RTI-MPEEMVQAF----------KPDYVAPMVALLCSDM  522
              I   +E++ A            P+ VA   A L SD+
Sbjct  182  SGIPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDL  220


 Score = 124 bits (314),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 56/182 (31%), Positives = 81/182 (45%), Gaps = 22/182 (12%)

Query  19   GLGKAYATFFASRGANVVVNDLGVSHSGEGASSKAADVVVEEIRAAGGKA-----VANYD  73
            G+G A A   A  GA VV+ DL           +A    VEE+    G A     V + +
Sbjct  7    GIGWAIARALAEEGAEVVLTDLN----------EALAKRVEELAEELGAAVLPCDVTDEE  56

Query  74   SVENGEAIIETAIKNFGRIDVLINNAGILRDV--SFKNMKDQDWDLINKVHTYGAYKCAR  131
             VE   A++  A++ FGR+D+L+NNAG    +   F +   +D+D    V+ Y  +  A+
Sbjct  57   QVE---ALVAAAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAK  113

Query  132  AAWPHFRKQKYGRIINTASAAGLFGNFGQANYSAAKLGQVGFTETLAKEGAKYNIIANVI  191
            AA P  ++   G I+N +S            Y AAK      T  LA E     I  N I
Sbjct  114  AALPLMKEG--GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAI  171

Query  192  AP  193
            +P
Sbjct  172  SP  173


>CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain.  The maoC gene 
is part of a operon with maoA which is involved in the synthesis 
of monoamine oxidase. The MaoC protein is found to share 
similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 
4, peroxisomal hydratase-dehydrogenase-epimerase, 
fatty acid synthase beta subunit. Several bacterial proteins 
that are composed solely of this domain have (R)-specific 
enoyl-CoA hydratase activity. This domain is also present 
in the NodN nodulation protein N.
Length=123

 Score = 132 bits (333),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 57/120 (48%), Gaps = 6/120 (5%)

Query  774  NPPKRQPDVVIEEKTSEDQAALYRL-NGDRNPLHIDPEFSKVGGFKTPILHGLCSLGISG  832
            N P   PD       +E   AL+ L +GD NP+H+DPEF+K  GF  PI HG+ +L I  
Sbjct  4    NAPGEPPDTEKPRTVTEADIALFALVSGDHNPIHVDPEFAKKAGFGGPIAHGMLTLAIVA  63

Query  833  KHVFNKFG-----AFKSLKVRFAGVVLPGQTLKTEMWKEGNTVIFQTTVVETGKPAILGA  887
              V    G      F  +KVRF   V PG TL+TE    G     QT VVE        A
Sbjct  64   GLVEEWGGDNVIARFGEIKVRFTKPVFPGDTLRTEAEVVGKRDGRQTKVVEVTVEVTEVA  123


>CDD:430138 pfam08659, KR, KR domain.  This enzymatic domain is part of bacterial 
polyketide synthases and catalyzes the first step in 
the reductive modification of the beta-carbonyl centers in 
the growing polyketide chain. It uses NADPH to reduce the keto 
group to a hydroxy group.
Length=180

 Score = 78.8 bits (195),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 24/166 (14%)

Query  10   TVVVTGAGGGLGKAYATFFASRGA-NVVVNDLGVSHSGEGASSKAADVVVEEIRAAGGKA  68
            T ++TG  GGLG+  A + A RGA ++V+    +S S   A    A  ++ E+ A G + 
Sbjct  2    TYLITGGLGGLGRELARWLAERGARHLVL----LSRSA--APRPDAQALIAELEARGVEV  55

Query  69   ------VANYDSVENGEAIIETAIKNFGRIDVLINNAGILRDVSFKNMKDQDWDLINKVH  122
                  V++ D+V    A++         I  +I+ AG+LRD   +NM D+DW       
Sbjct  56   VVVACDVSDPDAVA---ALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWR-----R  107

Query  123  TYGAYKCARAAWPH--FRKQKYGRIINTASAAGLFGNFGQANYSAA  166
                 K       H     +     +  +S AGL G+ GQANY+AA
Sbjct  108  VLAP-KVTGTWNLHEATPDEPLDFFVLFSSIAGLLGSPGQANYAAA  152


 Score = 68.0 bits (167),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 71/156 (46%), Gaps = 19/156 (12%)

Query  317  LVTGGGNGLGRSYCLLFAKLGASVVV----NDLVDPEPV--VQEIKKMGGKA------VG  364
            L+TGG  GLGR      A+ GA  +V    +    P+    + E++  G +       V 
Sbjct  4    LITGGLGGLGRELARWLAERGARHLVLLSRSAAPRPDAQALIAELEARGVEVVVVACDVS  63

Query  365  NKASCEDGDAVVKTAIDAFGRIDILVNNAGILRDKAFTNMNDDLWNAVINVHLRGTYKVT  424
            +  +     A++         I  +++ AG+LRD    NM D+ W  V+   + GT+ + 
Sbjct  64   DPDAVA---ALLAEIKAEGPPIRGVIHAAGVLRDALLENMTDEDWRRVLAPKVTGTWNLH  120

Query  425  KAAWPHMLKQKYGRIVNTTSTSGIYGNFGQANYAAA  460
            +A     L       V  +S +G+ G+ GQANYAAA
Sbjct  121  EATPDEPLDF----FVLFSSIAGLLGSPGQANYAAA  152



Lambda      K        H        a         alpha
   0.316    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1154153256


Query= TCONS_00029727

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain. The maoC...  133     1e-38


>CDD:396243 pfam01575, MaoC_dehydratas, MaoC like domain.  The maoC gene 
is part of a operon with maoA which is involved in the synthesis 
of monoamine oxidase. The MaoC protein is found to share 
similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 
4, peroxisomal hydratase-dehydrogenase-epimerase, 
fatty acid synthase beta subunit. Several bacterial proteins 
that are composed solely of this domain have (R)-specific 
enoyl-CoA hydratase activity. This domain is also present 
in the NodN nodulation protein N.
Length=123

 Score = 133 bits (336),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 57/120 (48%), Gaps = 6/120 (5%)

Query  282  NPPKRQPDVVIEEKTSEDQAALYRL-NGDRNPLHIDPEFSKVGGFKTPILHGLCSLGISG  340
            N P   PD       +E   AL+ L +GD NP+H+DPEF+K  GF  PI HG+ +L I  
Sbjct  4    NAPGEPPDTEKPRTVTEADIALFALVSGDHNPIHVDPEFAKKAGFGGPIAHGMLTLAIVA  63

Query  341  KHVFNKFG-----AFKSLKVRFAGVVLPGQTLKTEMWKEGNTVIFQTTVVETGKPAILGA  395
              V    G      F  +KVRF   V PG TL+TE    G     QT VVE        A
Sbjct  64   GLVEEWGGDNVIARFGEIKVRFTKPVFPGDTLRTEAEVVGKRDGRQTKVVEVTVEVTEVA  123



Lambda      K        H        a         alpha
   0.316    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00029728

Length=736


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 934207584


Query= TCONS_00034554

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  148     3e-41
CDD:425764 pfam00581, Rhodanese, Rhodanese-like domain. Rhodanese...  62.5    8e-13


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 148 bits (376),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 80/311 (26%), Positives = 121/311 (39%), Gaps = 46/311 (15%)

Query  28   PLVEVPEYLNPYHPDGVRIYAKMMSMHPANNVKAMPALNMLEKKVVPGKTKTIIEYSSGS  87
            PLV +P         GV +Y K+ S++P  + K   ALN+L +       KT++E SSG+
Sbjct  9    PLVRLP---RLSKELGVDVYLKLESLNPTGSFKDRGALNLLLRLKEGEGGKTVVEASSGN  65

Query  88   TVISMSMIARIMHGIHDTRAFLSNKTSDAKLKLMQFFGLDITLFGGPSQPEPFDDRGGIQ  147
               +++  A    G+      +       KL LM+  G ++ L GG       D    + 
Sbjct  66   HGRALAAAAA-RLGL-KVTIVVPEDAPPGKLLLMRALGAEVVLVGG-------DYDEAVA  116

Query  148  RARKMGLESDEILNPNQYENNDNWGAHVRWTGPQILKQL-PEINVLCAGMGTSGTMTGLG  206
             AR++  E       NQY+N  N   +    G +IL+QL  + + +   +G  G + G+ 
Sbjct  117  AARELAAEGPGAYYINQYDNPLNIEGYG-TIGLEILEQLGGDPDAVVVPVGGGGLIAGIA  175

Query  207  MFFKENKPSVLRLGVCTAAGD------------RVPGPRSLA-----LLKPVEFPW---R  246
               KE  P V  +GV                   VP   ++A       +P         
Sbjct  176  RGLKELGPDVRVIGVEPEGAPALARSLAAGRPVPVPVADTIADGLGVGDEPGALALDLLD  235

Query  247  EAVDAIEEVNSYDSFSLSLDLCR-EGIVCGPSSGFNLQGLFQLLGKRKQAGTLAELAGPD  305
            E V  +  V+  ++      L R EGIV  PSS   L  L     K   AG   EL G D
Sbjct  236  EYVGEVVTVSDEEALEAMRLLARREGIVVEPSSAAALAAL-----KLALAG---ELKGGD  287

Query  306  GLIHCVFICCD  316
                 V +   
Sbjct  288  ---RVVVVLTG  295


>CDD:425764 pfam00581, Rhodanese, Rhodanese-like domain.  Rhodanese has an 
internal duplication. This Pfam represents a single copy of 
this duplicated domain. The domain is found as a single copy 
in other proteins, including phosphatases and ubiquitin C-terminal 
hydrolases.
Length=92

 Score = 62.5 bits (152),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 17/99 (17%)

Query  388  VLDLRTAADYSTWHLPGSVNIPLRSLDSHTPKPFADPGVLEAQWLELETLFKTEEALSKL  447
            ++D+R   +Y+  H+PG+VN+PL SL    P P  +                 E+ L  L
Sbjct  8    LIDVRPPEEYAKGHIPGAVNVPLSSLSLP-PLPLLE---------------LLEKLLELL  51

Query  448  RGQHVLVICYHGDTARVATSVLRAKGI-EADSLRGGYQA  485
            + + ++V C  G+ A  A ++L+A G      L GG++A
Sbjct  52   KDKPIVVYCNSGNRAAAAAALLKALGYKNVYVLDGGFEA  90



Lambda      K        H        a         alpha
   0.319    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00029729

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  148     3e-41
CDD:425764 pfam00581, Rhodanese, Rhodanese-like domain. Rhodanese...  62.5    8e-13


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 148 bits (376),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 80/311 (26%), Positives = 121/311 (39%), Gaps = 46/311 (15%)

Query  28   PLVEVPEYLNPYHPDGVRIYAKMMSMHPANNVKAMPALNMLEKKVVPGKTKTIIEYSSGS  87
            PLV +P         GV +Y K+ S++P  + K   ALN+L +       KT++E SSG+
Sbjct  9    PLVRLP---RLSKELGVDVYLKLESLNPTGSFKDRGALNLLLRLKEGEGGKTVVEASSGN  65

Query  88   TVISMSMIARIMHGIHDTRAFLSNKTSDAKLKLMQFFGLDITLFGGPSQPEPFDDRGGIQ  147
               +++  A    G+      +       KL LM+  G ++ L GG       D    + 
Sbjct  66   HGRALAAAAA-RLGL-KVTIVVPEDAPPGKLLLMRALGAEVVLVGG-------DYDEAVA  116

Query  148  RARKMGLESDEILNPNQYENNDNWGAHVRWTGPQILKQL-PEINVLCAGMGTSGTMTGLG  206
             AR++  E       NQY+N  N   +    G +IL+QL  + + +   +G  G + G+ 
Sbjct  117  AARELAAEGPGAYYINQYDNPLNIEGYG-TIGLEILEQLGGDPDAVVVPVGGGGLIAGIA  175

Query  207  MFFKENKPSVLRLGVCTAAGD------------RVPGPRSLA-----LLKPVEFPW---R  246
               KE  P V  +GV                   VP   ++A       +P         
Sbjct  176  RGLKELGPDVRVIGVEPEGAPALARSLAAGRPVPVPVADTIADGLGVGDEPGALALDLLD  235

Query  247  EAVDAIEEVNSYDSFSLSLDLCR-EGIVCGPSSGFNLQGLFQLLGKRKQAGTLAELAGPD  305
            E V  +  V+  ++      L R EGIV  PSS   L  L     K   AG   EL G D
Sbjct  236  EYVGEVVTVSDEEALEAMRLLARREGIVVEPSSAAALAAL-----KLALAG---ELKGGD  287

Query  306  GLIHCVFICCD  316
                 V +   
Sbjct  288  ---RVVVVLTG  295


>CDD:425764 pfam00581, Rhodanese, Rhodanese-like domain.  Rhodanese has an 
internal duplication. This Pfam represents a single copy of 
this duplicated domain. The domain is found as a single copy 
in other proteins, including phosphatases and ubiquitin C-terminal 
hydrolases.
Length=92

 Score = 62.5 bits (152),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 17/99 (17%)

Query  388  VLDLRTAADYSTWHLPGSVNIPLRSLDSHTPKPFADPGVLEAQWLELETLFKTEEALSKL  447
            ++D+R   +Y+  H+PG+VN+PL SL    P P  +                 E+ L  L
Sbjct  8    LIDVRPPEEYAKGHIPGAVNVPLSSLSLP-PLPLLE---------------LLEKLLELL  51

Query  448  RGQHVLVICYHGDTARVATSVLRAKGI-EADSLRGGYQA  485
            + + ++V C  G+ A  A ++L+A G      L GG++A
Sbjct  52   KDKPIVVYCNSGNRAAAAAALLKALGYKNVYVLDGGFEA  90



Lambda      K        H        a         alpha
   0.319    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00029730

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  148     3e-42


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 148 bits (376),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 80/311 (26%), Positives = 121/311 (39%), Gaps = 46/311 (15%)

Query  28   PLVEVPEYLNPYHPDGVRIYAKMMSMHPANNVKAMPALNMLEKKVVPGKTKTIIEYSSGS  87
            PLV +P         GV +Y K+ S++P  + K   ALN+L +       KT++E SSG+
Sbjct  9    PLVRLP---RLSKELGVDVYLKLESLNPTGSFKDRGALNLLLRLKEGEGGKTVVEASSGN  65

Query  88   TVISMSMIARIMHGIHDTRAFLSNKTSDAKLKLMQFFGLDITLFGGPSQPEPFDDRGGIQ  147
               +++  A    G+      +       KL LM+  G ++ L GG       D    + 
Sbjct  66   HGRALAAAAA-RLGL-KVTIVVPEDAPPGKLLLMRALGAEVVLVGG-------DYDEAVA  116

Query  148  RARKMGLESDEILNPNQYENNDNWGAHVRWTGPQILKQL-PEINVLCAGMGTSGTMTGLG  206
             AR++  E       NQY+N  N   +    G +IL+QL  + + +   +G  G + G+ 
Sbjct  117  AARELAAEGPGAYYINQYDNPLNIEGYG-TIGLEILEQLGGDPDAVVVPVGGGGLIAGIA  175

Query  207  MFFKENKPSVLRLGVCTAAGD------------RVPGPRSLA-----LLKPVEFPW---R  246
               KE  P V  +GV                   VP   ++A       +P         
Sbjct  176  RGLKELGPDVRVIGVEPEGAPALARSLAAGRPVPVPVADTIADGLGVGDEPGALALDLLD  235

Query  247  EAVDAIEEVNSYDSFSLSLDLCR-EGIVCGPSSGFNLQGLFQLLGKRKQAGTLAELAGPD  305
            E V  +  V+  ++      L R EGIV  PSS   L  L     K   AG   EL G D
Sbjct  236  EYVGEVVTVSDEEALEAMRLLARREGIVVEPSSAAALAAL-----KLALAG---ELKGGD  287

Query  306  GLIHCVFICCD  316
                 V +   
Sbjct  288  ---RVVVVLTG  295



Lambda      K        H        a         alpha
   0.320    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00029731

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  133     5e-36
CDD:425764 pfam00581, Rhodanese, Rhodanese-like domain. Rhodanese...  62.5    7e-13


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 133 bits (337),  Expect = 5e-36, Method: Composition-based stats.
 Identities = 72/289 (25%), Positives = 111/289 (38%), Gaps = 43/289 (15%)

Query  1    MMSMHPANNVKAMPALNMLEKKVVPGKTKTIIEYSSGSTVISMSMIARIMHGIHDTRAFL  60
            + S++P  + K   ALN+L +       KT++E SSG+   +++  A    G+      +
Sbjct  28   LESLNPTGSFKDRGALNLLLRLKEGEGGKTVVEASSGNHGRALAAAAA-RLGL-KVTIVV  85

Query  61   SNKTSDAKLKLMQFFGLDITLFGGPSQPEPFDDRGGIQRARKMGLESDEILNPNQYENND  120
                   KL LM+  G ++ L GG       D    +  AR++  E       NQY+N  
Sbjct  86   PEDAPPGKLLLMRALGAEVVLVGG-------DYDEAVAAARELAAEGPGAYYINQYDNPL  138

Query  121  NWGAHVRWTGPQILKQL-PEINVLCAGMGTSGTMTGLGMFFKENKPSVLRLGVCTAAGD-  178
            N   +    G +IL+QL  + + +   +G  G + G+    KE  P V  +GV       
Sbjct  139  NIEGYG-TIGLEILEQLGGDPDAVVVPVGGGGLIAGIARGLKELGPDVRVIGVEPEGAPA  197

Query  179  -----------RVPGPRSLA-----LLKPVEFPW---REAVDAIEEVNSYDSFSLSLDLC  219
                        VP   ++A       +P         E V  +  V+  ++      L 
Sbjct  198  LARSLAAGRPVPVPVADTIADGLGVGDEPGALALDLLDEYVGEVVTVSDEEALEAMRLLA  257

Query  220  R-EGIVCGPSSGFNLQGLFQLLGKRKQAGTLAELAGPDGLIHCVFICCD  267
            R EGIV  PSS   L  L     K   AG   EL G D     V +   
Sbjct  258  RREGIVVEPSSAAALAAL-----KLALAG---ELKGGD---RVVVVLTG  295


>CDD:425764 pfam00581, Rhodanese, Rhodanese-like domain.  Rhodanese has an 
internal duplication. This Pfam represents a single copy of 
this duplicated domain. The domain is found as a single copy 
in other proteins, including phosphatases and ubiquitin C-terminal 
hydrolases.
Length=92

 Score = 62.5 bits (152),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 17/99 (17%)

Query  339  VLDLRTAADYSTWHLPGSVNIPLRSLDSHTPKPFADPGVLEAQWLELETLFKTEEALSKL  398
            ++D+R   +Y+  H+PG+VN+PL SL    P P  +                 E+ L  L
Sbjct  8    LIDVRPPEEYAKGHIPGAVNVPLSSLSLP-PLPLLE---------------LLEKLLELL  51

Query  399  RGQHVLVICYHGDTARVATSVLRAKGI-EADSLRGGYQA  436
            + + ++V C  G+ A  A ++L+A G      L GG++A
Sbjct  52   KDKPIVVYCNSGNRAAAAAALLKALGYKNVYVLDGGFEA  90



Lambda      K        H        a         alpha
   0.319    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593543448


Query= TCONS_00034555

Length=605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  94.6    1e-23
CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               72.8    3e-16


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 94.6 bits (236),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 36/114 (32%), Positives = 56/114 (49%), Gaps = 2/114 (2%)

Query  158  TGWMALGLLPFVLVLGTKANLISMLTGVPHEKLQVFHHWASYAMFVLALIHTFPFII--V  215
             G +AL LLP +L+L  + N +  LTG+ +++L +FH W     F+LAL+H   ++I  +
Sbjct  1    LGILALALLPLLLLLALRNNPLEWLTGLSYDRLLLFHRWLGRLAFLLALLHVILYLIYWL  60

Query  216  HIDKGDMVKQWKTEVTYWTGVAALIPQAYLTFMSLPAIRNRYYEFFKATHITVA  269
                  ++           G+ AL+    L   SLP  R   YE F   HI +A
Sbjct  61   RFSLEGILDLLLKRPYNILGIIALVLLVLLAITSLPPFRRLSYELFLYLHILLA  114


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 72.8 bits (179),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 35/114 (31%), Positives = 58/114 (51%), Gaps = 21/114 (18%)

Query  313  GRHKATLDVLPCGLVRIKIP---TFITWSPGQHVFLRFLNASQLGLHSLTAHPFTITSIA  369
            G  KA + +LP  ++++++        + PGQ++F+ FL      L  L +HPFTITS  
Sbjct  3    GVPKAKVALLPDNVLKLRVSKPKKPFKYKPGQYMFINFLPP----LSFLQSHPFTITSAP  58

Query  370  HDAASLSKHNELVFYIQPRGGITARLASLAAQRPG-------TEQTVLLEGPYG  416
             D       ++L  +I+ +GG T +LA+  +            +  VL+EGPYG
Sbjct  59   SD-------DKLSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIEGPYG  105



Lambda      K        H        a         alpha
   0.324    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 766641564


Query= TCONS_00034556

Length=606
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  94.3    1e-23
CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               72.8    3e-16


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 94.3 bits (235),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 36/114 (32%), Positives = 56/114 (49%), Gaps = 2/114 (2%)

Query  158  TGWMALGLLPFVLVLGTKANLISMLTGVPHEKLQVFHHWASYAMFVLALIHTFPFII--V  215
             G +AL LLP +L+L  + N +  LTG+ +++L +FH W     F+LAL+H   ++I  +
Sbjct  1    LGILALALLPLLLLLALRNNPLEWLTGLSYDRLLLFHRWLGRLAFLLALLHVILYLIYWL  60

Query  216  HIDKGDMVKQWKTEVTYWTGVAALIPQAYLTFMSLPAIRNRYYEFFKATHITVA  269
                  ++           G+ AL+    L   SLP  R   YE F   HI +A
Sbjct  61   RFSLEGILDLLLKRPYNILGIIALVLLVLLAITSLPPFRRLSYELFLYLHILLA  114


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 72.8 bits (179),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 35/114 (31%), Positives = 58/114 (51%), Gaps = 21/114 (18%)

Query  313  GRHKATLDVLPCGLVRIKIP---TFITWSPGQHVFLRFLNASQLGLHSLTAHPFTITSIA  369
            G  KA + +LP  ++++++        + PGQ++F+ FL      L  L +HPFTITS  
Sbjct  3    GVPKAKVALLPDNVLKLRVSKPKKPFKYKPGQYMFINFLPP----LSFLQSHPFTITSAP  58

Query  370  HDAASLSKHNELVFYIQPRGGITARLASLAAQRPG-------TEQTVLLEGPYG  416
             D       ++L  +I+ +GG T +LA+  +            +  VL+EGPYG
Sbjct  59   SD-------DKLSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIEGPYG  105



Lambda      K        H        a         alpha
   0.324    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 768135992


Query= TCONS_00029732

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  69.2    1e-15


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 69.2 bits (170),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query  158  TGWMALGLLPFVLVLGTKANLISMLTGVPHEKLQVFHHWASYAMFVLALIHTFPFII--V  215
             G +AL LLP +L+L  + N +  LTG+ +++L +FH W     F+LAL+H   ++I  +
Sbjct  1    LGILALALLPLLLLLALRNNPLEWLTGLSYDRLLLFHRWLGRLAFLLALLHVILYLIYWL  60

Query  216  HIDKGDMVKQWKTEVTYWTGVAALIPQAYLTFMSLPAIR  254
                  ++           G+ AL+    L   SLP  R
Sbjct  61   RFSLEGILDLLLKRPYNILGIIALVLLVLLAITSLPPFR  99



Lambda      K        H        a         alpha
   0.327    0.139    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00034557

Length=425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               74.3    7e-17
CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  72.7    3e-16


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 74.3 bits (183),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 35/114 (31%), Positives = 58/114 (51%), Gaps = 21/114 (18%)

Query  133  GRHKATLDVLPCGLVRIKIP---TFITWSPGQHVFLRFLNASQLGLHSLTAHPFTITSIA  189
            G  KA + +LP  ++++++        + PGQ++F+ FL      L  L +HPFTITS  
Sbjct  3    GVPKAKVALLPDNVLKLRVSKPKKPFKYKPGQYMFINFLPP----LSFLQSHPFTITSAP  58

Query  190  HDAASLSKHNELVFYIQPRGGITARLASLAAQRPG-------TEQTVLLEGPYG  236
             D       ++L  +I+ +GG T +LA+  +            +  VL+EGPYG
Sbjct  59   SD-------DKLSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIEGPYG  105


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 72.7 bits (179),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (47%), Gaps = 2/90 (2%)

Query  2    LTGVPHEKLQVFHHWASYAMFVLALIHTFPFII--VHIDKGDMVKQWKTEVTYWTGVAAL  59
            LTG+ +++L +FH W     F+LAL+H   ++I  +      ++           G+ AL
Sbjct  25   LTGLSYDRLLLFHRWLGRLAFLLALLHVILYLIYWLRFSLEGILDLLLKRPYNILGIIAL  84

Query  60   IPQAYLTFMSLPAIRNRYYEFFKATHITVA  89
            +    L   SLP  R   YE F   HI +A
Sbjct  85   VLLVLLAITSLPPFRRLSYELFLYLHILLA  114



Lambda      K        H        a         alpha
   0.323    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521922912


Query= TCONS_00034558

Length=299
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  86.6    8e-22


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 86.6 bits (215),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 36/114 (32%), Positives = 56/114 (49%), Gaps = 2/114 (2%)

Query  158  TGWMALGLLPFVLVLGTKANLISMLTGVPHEKLQVFHHWASYAMFVLALIHTFPFII--V  215
             G +AL LLP +L+L  + N +  LTG+ +++L +FH W     F+LAL+H   ++I  +
Sbjct  1    LGILALALLPLLLLLALRNNPLEWLTGLSYDRLLLFHRWLGRLAFLLALLHVILYLIYWL  60

Query  216  HIDKGDMVKQWKTEVTYWTGVAALIPQAYLTFMSLPAIRNRYYEFFKATHITVA  269
                  ++           G+ AL+    L   SLP  R   YE F   HI +A
Sbjct  61   RFSLEGILDLLLKRPYNILGIIALVLLVLLAITSLPPFRRLSYELFLYLHILLA  114



Lambda      K        H        a         alpha
   0.330    0.141    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00029733

Length=605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  94.6    1e-23
CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               72.8    3e-16


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 94.6 bits (236),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 36/114 (32%), Positives = 56/114 (49%), Gaps = 2/114 (2%)

Query  158  TGWMALGLLPFVLVLGTKANLISMLTGVPHEKLQVFHHWASYAMFVLALIHTFPFII--V  215
             G +AL LLP +L+L  + N +  LTG+ +++L +FH W     F+LAL+H   ++I  +
Sbjct  1    LGILALALLPLLLLLALRNNPLEWLTGLSYDRLLLFHRWLGRLAFLLALLHVILYLIYWL  60

Query  216  HIDKGDMVKQWKTEVTYWTGVAALIPQAYLTFMSLPAIRNRYYEFFKATHITVA  269
                  ++           G+ AL+    L   SLP  R   YE F   HI +A
Sbjct  61   RFSLEGILDLLLKRPYNILGIIALVLLVLLAITSLPPFRRLSYELFLYLHILLA  114


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 72.8 bits (179),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 35/114 (31%), Positives = 58/114 (51%), Gaps = 21/114 (18%)

Query  313  GRHKATLDVLPCGLVRIKIP---TFITWSPGQHVFLRFLNASQLGLHSLTAHPFTITSIA  369
            G  KA + +LP  ++++++        + PGQ++F+ FL      L  L +HPFTITS  
Sbjct  3    GVPKAKVALLPDNVLKLRVSKPKKPFKYKPGQYMFINFLPP----LSFLQSHPFTITSAP  58

Query  370  HDAASLSKHNELVFYIQPRGGITARLASLAAQRPG-------TEQTVLLEGPYG  416
             D       ++L  +I+ +GG T +LA+  +            +  VL+EGPYG
Sbjct  59   SD-------DKLSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIEGPYG  105



Lambda      K        H        a         alpha
   0.324    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 766641564


Query= TCONS_00029736

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0731    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00034559

Length=458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transm...  79.2    2e-18
CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain               74.3    8e-17


>CDD:426438 pfam01794, Ferric_reduct, Ferric reductase like transmembrane 
component.  This family includes a common region in the transmembrane 
proteins mammalian cytochrome B-245 heavy chain (gp91-phox), 
ferric reductase transmembrane component in yeast 
and respiratory burst oxidase from mouse-ear cress. This may 
be a family of flavocytochromes capable of moving electrons 
across the plasma membrane. The Frp1 protein from S. pombe 
is a ferric reductase component and is required for cell surface 
ferric reductase activity, mutants in frp1 are deficient 
in ferric iron uptake. Cytochrome B-245 heavy chain is a 
FAD-dependent dehydrogenase it is also has electron transferase 
activity which reduces molecular oxygen to superoxide anion, 
a precursor in the production of microbicidal oxidants. 
Mutations in the sequence of cytochrome B-245 heavy chain 
(gp91-phox) lead to the X-linked chronic granulomatous disease. 
The bacteriocidal ability of phagocytic cells is reduced 
and is characterized by the absence of a functional plasma 
membrane associated NADPH oxidase. The chronic granulomatous 
disease gene codes for the beta chain of cytochrome B-245 and 
cytochrome B-245 is missing from patients with the disease.
Length=121

 Score = 79.2 bits (196),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 30/104 (29%), Positives = 48/104 (46%), Gaps = 2/104 (2%)

Query  21   LCWVLGTKANLISMLTGVPHEKLQVFHHWASYAMFVLALIHTFPFII--VHIDKGDMVKQ  78
            L  +L  + N +  LTG+ +++L +FH W     F+LAL+H   ++I  +      ++  
Sbjct  11   LLLLLALRNNPLEWLTGLSYDRLLLFHRWLGRLAFLLALLHVILYLIYWLRFSLEGILDL  70

Query  79   WKTEVTYWTGVAALIPQAYLTFMSLPAIRNRYYEFFKATHITVA  122
                     G+ AL+    L   SLP  R   YE F   HI +A
Sbjct  71   LLKRPYNILGIIALVLLVLLAITSLPPFRRLSYELFLYLHILLA  114


>CDD:285293 pfam08022, FAD_binding_8, FAD-binding domain.  
Length=108

 Score = 74.3 bits (183),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 35/114 (31%), Positives = 58/114 (51%), Gaps = 21/114 (18%)

Query  166  GRHKATLDVLPCGLVRIKIP---TFITWSPGQHVFLRFLNASQLGLHSLTAHPFTITSIA  222
            G  KA + +LP  ++++++        + PGQ++F+ FL      L  L +HPFTITS  
Sbjct  3    GVPKAKVALLPDNVLKLRVSKPKKPFKYKPGQYMFINFLPP----LSFLQSHPFTITSAP  58

Query  223  HDAASLSKHNELVFYIQPRGGITARLASLAAQRPG-------TEQTVLLEGPYG  269
             D       ++L  +I+ +GG T +LA+  +            +  VL+EGPYG
Sbjct  59   SD-------DKLSLHIKVKGGWTRKLANYLSSSCPKSPENGKDKPRVLIEGPYG  105



Lambda      K        H        a         alpha
   0.324    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 564403072


Query= TCONS_00029737

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00029738

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461508 pfam04987, PigN, Phosphatidylinositolglycan class N (P...  56.1    5e-11


>CDD:461508 pfam04987, PigN, Phosphatidylinositolglycan class N (PIG-N). 
 Phosphatidylinositolglycan class N (PIG-N) is a mammalian homolog 
of the yeast protein MCD4P and is expressed in the endoplasmic 
reticulum. PIG-N is essential for glycosylphosphatidylinositol 
anchor synthesis. Glycosylphosphatidylinositol 
(GPI)-anchored proteins are cell surface-localized proteins 
that serve many important cellular functions.
Length=454

 Score = 56.1 bits (136),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 17/23 (74%), Positives = 22/23 (96%), Gaps = 0/23 (0%)

Query  1    MVVMSISDVMTLNFFYMVRDEGS  23
            ++V+ ISDVMTLNFF++VRDEGS
Sbjct  432  LLVLLISDVMTLNFFFLVRDEGS  454



Lambda      K        H        a         alpha
   0.316    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00034560

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461508 pfam04987, PigN, Phosphatidylinositolglycan class N (P...  162     2e-46


>CDD:461508 pfam04987, PigN, Phosphatidylinositolglycan class N (PIG-N). 
 Phosphatidylinositolglycan class N (PIG-N) is a mammalian homolog 
of the yeast protein MCD4P and is expressed in the endoplasmic 
reticulum. PIG-N is essential for glycosylphosphatidylinositol 
anchor synthesis. Glycosylphosphatidylinositol 
(GPI)-anchored proteins are cell surface-localized proteins 
that serve many important cellular functions.
Length=454

 Score = 162 bits (413),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 58/115 (50%), Positives = 74/115 (64%), Gaps = 5/115 (4%)

Query  265  EGLRYLQTYDWLFLRTIITFGYLGWIAYALTTVIDLHVLHRTSDSKRTVGSTIFF-----  319
            EGLRY QTYDWLFLRTI+T GYLGWIAY L TV+ LHVL  +  S RT  ST+       
Sbjct  1    EGLRYYQTYDWLFLRTIVTLGYLGWIAYLLLTVLKLHVLLGSKPSSRTTLSTLLGYKFSS  60

Query  320  TSILAALFSVLLYQKSSWQYYVYGAFPIFFWEEVFARRKALIAGREILLGHVRSF  374
            T +L  L++ L  Q+S   YY+Y  FP++FW ++ A R  L AG + L  H++S 
Sbjct  61   TLLLVLLYAFLFLQRSPLTYYLYLLFPVYFWYQILAERPILQAGLKELFSHIKSS  115



Lambda      K        H        a         alpha
   0.322    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00029739

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  163     8e-50


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 163 bits (414),  Expect = 8e-50, Method: Composition-based stats.
 Identities = 62/135 (46%), Positives = 83/135 (61%), Gaps = 5/135 (4%)

Query  149  VLLYGPPGCGKTMLAKALAHESGACFINLHISTLTEKWYGDSNKLVNAVFSLARKLQPSI  208
            +LLYGPPG GKT LAKA+A E GA FI +  S L  K+ G+S K +  +F  A+KL P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  209  VFIDEIDAVLGTRRSGEHEASGMVKAEFMTHWDGLTSANSLGEPQRVVVLGATNRIQDID  268
            +FIDEIDA+ G+R SG    S  V  + +T  DG TS+NS     +V+V+ ATNR   +D
Sbjct  61   IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNS-----KVIVIAATNRPDKLD  115

Query  269  EAILRRMPKKFPVTL  283
             A+L R  +     L
Sbjct  116  PALLGRFDRIIEFPL  130



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00029740

Length=315


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.122    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00034562

Length=652


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00034561

Length=652


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00034563

Length=652


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00034564

Length=652


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00029742

Length=652


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00029743

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             153     8e-44
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  61.4    5e-12


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 153 bits (388),  Expect = 8e-44, Method: Composition-based stats.
 Identities = 76/204 (37%), Positives = 107/204 (52%), Gaps = 48/204 (24%)

Query  64   FLGIKYADQPI---RFTPSSLKTSYAANDSNSGPYDASGTGLALSKGTVLYNATQYGHEC  120
            FLGI YA+ P+   RF P      +            +G            +AT++G  C
Sbjct  28   FLGIPYAEPPVGELRFQPPEPPEPW------------TGV----------RDATKFGPRC  65

Query  121  PGYG---SDETKLVDMGLITLHEDCLNLNIIRPTRKSDNEELLPVMIWIFGGGWQQGATA  177
            P  G   S  +  ++       EDCL LN+  P    +N+  LPVM+WI GGG+  G+ +
Sbjct  66   PQNGDLTSPGSSGLEGS-----EDCLYLNVYTPKELKENKNKLPVMVWIHGGGFMFGSGS  120

Query  178  DPRYNMSYILRQGALNGKPVLGVSINYRVAAFGFL---DSEEVRATGNNNLGLRDQRVAM  234
               Y+ SY+  +G      V+ V+INYR+   GFL   D E   A GN   GL DQ +A+
Sbjct  121  --LYDGSYLAAEGD-----VIVVTINYRLGPLGFLSTGDDE---APGN--YGLLDQVLAL  168

Query  235  RWVKENIKAFGGDPDKVTIWGESA  258
            RWV+ENI +FGGDP++VT++GESA
Sbjct  169  RWVQENIASFGGDPNRVTLFGESA  192


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 61.4 bits (150),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query  145  LNIIRPTRKSDNEELLPVMIWIFGGGWQQGATADPRYNMSYILRQGALNGKPVLGVSINY  204
            L+I  P    + +   PV+IWI GGGW  G        M+  ++     G  V   SINY
Sbjct  1    LDIYLP---KNAKGPYPVVIWIHGGGWNSGDKEADMGFMTNTVKALLKAGYAV--ASINY  55

Query  205  RVAAFGFLDSEEVRATGNNNLGLRDQRVAMRWVKENIKAFGGDPDKVTIWGESA  258
            R++        + +        ++D + A+R+++ N   +G D +K+ + G SA
Sbjct  56   RLST-------DAKFPAQ----IQDVKAAIRFLRANAAKYGIDTNKIALMGFSA  98



Lambda      K        H        a         alpha
   0.316    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00029745

Length=584
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             285     3e-90
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  66.0    7e-13


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 285 bits (732),  Expect = 3e-90, Method: Composition-based stats.
 Identities = 150/522 (29%), Positives = 217/522 (42%), Gaps = 99/522 (19%)

Query  64   FLGIKYADQPI---RFTPSSLKTSYAANDSNSGPYDASGTGLALSKGTVLYNATQYGHEC  120
            FLGI YA+ P+   RF P      +            +G            +AT++G  C
Sbjct  28   FLGIPYAEPPVGELRFQPPEPPEPW------------TGV----------RDATKFGPRC  65

Query  121  PGYG---SDETKLVDMGLITLHEDCLNLNIIRPTRKSDNEELLPVMIWIFGGGWQQGATA  177
            P  G   S  +  ++       EDCL LN+  P    +N+  LPVM+WI GGG+  G+ +
Sbjct  66   PQNGDLTSPGSSGLEGS-----EDCLYLNVYTPKELKENKNKLPVMVWIHGGGFMFGSGS  120

Query  178  DPRYNMSYILRQGALNGKPVLGVSINYRVAAFGFLDSEEVRATGNNNLGLRDQRVAMRWV  237
               Y+ SY+  +G      V+ V+INYR+   GFL + +  A GN   GL DQ +A+RWV
Sbjct  121  --LYDGSYLAAEGD-----VIVVTINYRLGPLGFLSTGDDEAPGN--YGLLDQVLALRWV  171

Query  238  KENIKAFGGDPDKVTIWGESAGAYSVGAHLVANGGDNEGLFRAAIMESGNAVGP------  291
            +ENI +FGGDP++VT++GESAGA SV   L++    ++GLF  AI+ SG+A+ P      
Sbjct  172  QENIASFGGDPNRVTLFGESAGAASVSLLLLSP--LSKGLFHRAILMSGSALSPWAIQSN  229

Query  292  PWNGTDWHQPMYDRIVNKAGC--STSSDTLQCLREVPYQ-------SLYDIAYEGLEWFA  342
                          +    GC  S S++ ++CLR  P +        L          F 
Sbjct  230  ARQRA-------KELAKLVGCPTSDSAELVECLRSKPAEELLDAQLKLLVYGSVPFVPFG  282

Query  343  -AIDGSFIKEYPQISYTEGRLAKVPILLGSNTDEGTSFGTTGTNTDEECINQLISSKRWV  401
              +DG F+ E+P+     G   KVP+L+G   DEG  F     +        ++ +    
Sbjct  283  PVVDGDFLPEHPEELLKSGNFPKVPLLIGVTKDEGLLFAAYILDNV-----DILKALEEK  337

Query  402  LTREEATRLLTYYPNDPALGCPYGWGNVTWPKLGLMY-------------KRYESMAGDL  448
            L R     LL     D                L   Y             +    +  D 
Sbjct  338  LLRSLLIDLLYLLLVD--------LPEEISAALREEYLDWGDRDDPETSRRALVELLTDY  389

Query  449  TMVAPRRLLAQTMAKYTKQVYSYRWDVPALNTSS--TIGVGHFAEIPFVFANPVQNITPL  506
                P    A   A     VY Y +D    +      +GV H  E+P+VF  P   +  L
Sbjct  390  LFNCPVIRFADLHASRGTPVYMYSFDYRGSSLRYPKWVGVDHGDELPYVFGTPF--VGAL  447

Query  507  GTDPSRLELGNMAARMWTSFVTDLNPNGHGVPRIPQWPKYTP  548
                   +L       WT+F    NPNG      P+WP YT 
Sbjct  448  LFTEEDEKLSRKMMTYWTNFAKTGNPNGPEGL--PKWPPYTD  487


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 66.0 bits (162),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 57/128 (45%), Gaps = 21/128 (16%)

Query  145  LNIIRPTRKSDNEELLPVMIWIFGGGWQQGATADPRYNMSYILRQGALNGKPVLGVSINY  204
            L+I  P    + +   PV+IWI GGGW  G        M+  ++     G  V   SINY
Sbjct  1    LDIYLP---KNAKGPYPVVIWIHGGGWNSGDKEADMGFMTNTVKALLKAGYAV--ASINY  55

Query  205  RVAAFGFLDSEEVRATGNNNLGLRDQRVAMRWVKENIKAFGGDPDKVTIWGESAGAYSVG  264
            R+       S + +        ++D + A+R+++ N   +G D +K+ + G SA     G
Sbjct  56   RL-------STDAKFPAQ----IQDVKAAIRFLRANAAKYGIDTNKIALMGFSA-----G  99

Query  265  AHLVANGG  272
             HL    G
Sbjct  100  GHLALLAG  107



Lambda      K        H        a         alpha
   0.317    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 735258576


Query= TCONS_00029744

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             118     2e-30


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 118 bits (297),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 101/303 (33%), Gaps = 47/303 (16%)

Query  4    AIMESGNAVGP------PWNGTDWHQPMYDRIVNKAGC--STSSDTLQCLREVPYQ----  51
            AI+ SG+A+ P                    +    GC  S S++ ++CLR  P +    
Sbjct  213  AILMSGSALSPWAIQSNARQRAK-------ELAKLVGCPTSDSAELVECLRSKPAEELLD  265

Query  52   ---SLYDIAYEGLEWFA-AIDGSFIKEYPQISYTEGRLAKVPILLGSNTDEGTSFGTTGT  107
                L          F   +DG F+ E+P+     G   KVP+L+G   DEG  F     
Sbjct  266  AQLKLLVYGSVPFVPFGPVVDGDFLPEHPEELLKSGNFPKVPLLIGVTKDEGLLFAAYIL  325

Query  108  NTDEECINQLICGFFCRPRQRLVLTMTASKRWVLTREEATR-LLTYYPNDPALGCPYGWG  166
            +      N  I         R +L        V   EE +  L   Y +           
Sbjct  326  D------NVDILKALEEKLLRSLLIDLLYLLLVDLPEEISAALREEYLDWGDRD-----D  374

Query  167  NVTWPKLGLMYKRYESMAGDLTMVAPRRLLAQTMAKYTKQVYSYRWDVPALNTSS--TIG  224
              T        +    +  D     P    A   A     VY Y +D    +      +G
Sbjct  375  PETS------RRALVELLTDYLFNCPVIRFADLHASRGTPVYMYSFDYRGSSLRYPKWVG  428

Query  225  VGHFAEIPFVFANPVQNITPLGTDPSRLELGNMAARMWTSFVTDLNPNGHGVPRIPQWPK  284
            V H  E+P+VF  P   +  L       +L       WT+F    NPNG      P+WP 
Sbjct  429  VDHGDELPYVFGTPF--VGALLFTEEDEKLSRKMMTYWTNFAKTGNPNGPEGL--PKWPP  484

Query  285  YTP  287
            YT 
Sbjct  485  YTD  487



Lambda      K        H        a         alpha
   0.319    0.136    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00034565

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             267     1e-83
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  66.4    5e-13


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 267 bits (684),  Expect = 1e-83, Method: Composition-based stats.
 Identities = 144/513 (28%), Positives = 208/513 (41%), Gaps = 99/513 (19%)

Query  64   FLGIKYADQPI---RFTPSSLKTSYAANDSNSGPYDASGTGLALSKGTVLYNATQYGHEC  120
            FLGI YA+ P+   RF P      +            +G            +AT++G  C
Sbjct  28   FLGIPYAEPPVGELRFQPPEPPEPW------------TGV----------RDATKFGPRC  65

Query  121  PGYG---SDETKLVDMGLITLHEDCLNLNIIRPTRKSDNEELLPVMIWIFGGGWQQGATA  177
            P  G   S  +  ++       EDCL LN+  P    +N+  LPVM+WI GGG+  G+ +
Sbjct  66   PQNGDLTSPGSSGLEGS-----EDCLYLNVYTPKELKENKNKLPVMVWIHGGGFMFGSGS  120

Query  178  DPRYNMSYILRQGALNGKPVLGVSINYRVAAFGFLDSEEVRATGNNNLGLRDQRVAMRWV  237
               Y+ SY+  +G      V+ V+INYR+   GFL + +  A GN   GL DQ +A+RWV
Sbjct  121  --LYDGSYLAAEGD-----VIVVTINYRLGPLGFLSTGDDEAPGN--YGLLDQVLALRWV  171

Query  238  KENIKAFGGDPDKVTIWGESAGAYSVGAHLVANGGDNEGLFRAAIMESGNAVGP------  291
            +ENI +FGGDP++VT++GESAGA SV   L++    ++GLF  AI+ SG+A+ P      
Sbjct  172  QENIASFGGDPNRVTLFGESAGAASVSLLLLSP--LSKGLFHRAILMSGSALSPWAIQSN  229

Query  292  PWNGTDWHQPMYDRIVNKAGYLNRSSP---LQCLREVPYQ-------SLYDIAYEGLEWF  341
                          +    G    S     ++CLR  P +        L          F
Sbjct  230  ARQRA-------KELAKLVGC-PTSDSAELVECLRSKPAEELLDAQLKLLVYGSVPFVPF  281

Query  342  A-AIDGSFIKEYPQISYTEGRLAKVPILLGSNTDEGTSFGTTGTNTDEECINQLISSKRW  400
               +DG F+ E+P+     G   KVP+L+G   DEG  F     +        ++ +   
Sbjct  282  GPVVDGDFLPEHPEELLKSGNFPKVPLLIGVTKDEGLLFAAYILDNV-----DILKALEE  336

Query  401  VLTREEATRLLTYYPNDPALGCPYGWGNVTWPKLGLMY-------------KRYESMAGD  447
             L R     LL     D                L   Y             +    +  D
Sbjct  337  KLLRSLLIDLLYLLLVD--------LPEEISAALREEYLDWGDRDDPETSRRALVELLTD  388

Query  448  LTMVAPRRLLAQTMAKYTKQVYSYRWDVPALNTSS--TIGVGHFAEIPFVFANPVQNITP  505
                 P    A   A     VY Y +D    +      +GV H  E+P+VF  P   +  
Sbjct  389  YLFNCPVIRFADLHASRGTPVYMYSFDYRGSSLRYPKWVGVDHGDELPYVFGTPF--VGA  446

Query  506  LGTDPSRLELGNMAARMWTSFVTDLNPNGHGGT  538
            L       +L       WT+F    NPNG  G 
Sbjct  447  LLFTEEDEKLSRKMMTYWTNFAKTGNPNGPEGL  479


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 66.4 bits (163),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 57/128 (45%), Gaps = 21/128 (16%)

Query  145  LNIIRPTRKSDNEELLPVMIWIFGGGWQQGATADPRYNMSYILRQGALNGKPVLGVSINY  204
            L+I  P    + +   PV+IWI GGGW  G        M+  ++     G  V   SINY
Sbjct  1    LDIYLP---KNAKGPYPVVIWIHGGGWNSGDKEADMGFMTNTVKALLKAGYAV--ASINY  55

Query  205  RVAAFGFLDSEEVRATGNNNLGLRDQRVAMRWVKENIKAFGGDPDKVTIWGESAGAYSVG  264
            R++        + +        ++D + A+R+++ N   +G D +K+ + G SA     G
Sbjct  56   RLST-------DAKFPAQ----IQDVKAAIRFLRANAAKYGIDTNKIALMGFSA-----G  99

Query  265  AHLVANGG  272
             HL    G
Sbjct  100  GHLALLAG  107



Lambda      K        H        a         alpha
   0.317    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00029746

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             66.6    1e-13


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 66.6 bits (163),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 54/126 (43%), Gaps = 35/126 (28%)

Query  64   FLGIKYADQPI---RFTPSSLKTSYAANDSNSGPYDASGTGLALSKGTVLYNATQYGHEC  120
            FLGI YA+ P+   RF P      +            +G            +AT++G  C
Sbjct  28   FLGIPYAEPPVGELRFQPPEPPEPW------------TGV----------RDATKFGPRC  65

Query  121  PGYG---SDETKLVDMGLITLHEDCLNLNIIRPTRKSDNEELLPVMIWIFGGGWQQG--A  175
            P  G   S  +  ++       EDCL LN+  P    +N+  LPVM+WI GGG+  G  +
Sbjct  66   PQNGDLTSPGSSGLEGS-----EDCLYLNVYTPKELKENKNKLPVMVWIHGGGFMFGSGS  120

Query  176  TADPRY  181
              D  Y
Sbjct  121  LYDGSY  126



Lambda      K        H        a         alpha
   0.315    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00034566

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             279     1e-87
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  66.8    5e-13


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 279 bits (716),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 153/526 (29%), Positives = 220/526 (42%), Gaps = 91/526 (17%)

Query  64   FLGIKYADQPI---RFTPSSLKTSYAANDSNSGPYDASGTGLALSKGTVLYNATQYGHEC  120
            FLGI YA+ P+   RF P      +            +G            +AT++G  C
Sbjct  28   FLGIPYAEPPVGELRFQPPEPPEPW------------TGV----------RDATKFGPRC  65

Query  121  PGYG---SDETKLVDMGLITLHEDCLNLNIIRPTRKSDNEELLPVMIWIFGGGWQQGATA  177
            P  G   S  +  ++       EDCL LN+  P    +N+  LPVM+WI GGG+  G+ +
Sbjct  66   PQNGDLTSPGSSGLEGS-----EDCLYLNVYTPKELKENKNKLPVMVWIHGGGFMFGSGS  120

Query  178  DPRYNMSYILRQGALNGKPVLGVSINYRVAAFGFLDSEEVRATGNNNLGLRDQRVAMRWV  237
               Y+ SY+  +G      V+ V+INYR+   GFL + +  A GN   GL DQ +A+RWV
Sbjct  121  --LYDGSYLAAEGD-----VIVVTINYRLGPLGFLSTGDDEAPGN--YGLLDQVLALRWV  171

Query  238  KENIKAFGGDPDKVTIWGESAGAYSVGAHLVANGGDNEGLFRAAIMESGNAVGP------  291
            +ENI +FGGDP++VT++GESAGA SV   L++    ++GLF  AI+ SG+A+ P      
Sbjct  172  QENIASFGGDPNRVTLFGESAGAASVSLLLLSP--LSKGLFHRAILMSGSALSPWAIQSN  229

Query  292  PWNGTDWHQPMYDRIVNKAGC--STSSDTLQCLREVPYQ-------SLYDIAYEGLEWFA  342
                          +    GC  S S++ ++CLR  P +        L          F 
Sbjct  230  ARQRA-------KELAKLVGCPTSDSAELVECLRSKPAEELLDAQLKLLVYGSVPFVPFG  282

Query  343  -AIDGSFIKEYPQISYTEGRLAKVPILLGSNTDEGTSFGTTGTNTDEECINQLICGFFCR  401
              +DG F+ E+P+     G   KVP+L+G   DEG  F     +      N  I      
Sbjct  283  PVVDGDFLPEHPEELLKSGNFPKVPLLIGVTKDEGLLFAAYILD------NVDILKALEE  336

Query  402  PRQRLVLTMTASKRWVLTREEATR-LLTYYPNDPALGCPYGWGNVTWPKLGLMYKRYESM  460
               R +L        V   EE +  L   Y +             T        +    +
Sbjct  337  KLLRSLLIDLLYLLLVDLPEEISAALREEYLDWGDRD-----DPETS------RRALVEL  385

Query  461  AGDLTMVAPRRLLAQTMAKYTKQVYSYRWDVPALNTSS--TIGVGHFAEVPFVFANPVQN  518
              D     P    A   A     VY Y +D    +      +GV H  E+P+VF  P   
Sbjct  386  LTDYLFNCPVIRFADLHASRGTPVYMYSFDYRGSSLRYPKWVGVDHGDELPYVFGTPF--  443

Query  519  ITPLGTDPSRLELGNMAARMWTSFVTDLNPNGHGVPRIPQWPKYTP  564
            +  L       +L       WT+F    NPNG      P+WP YT 
Sbjct  444  VGALLFTEEDEKLSRKMMTYWTNFAKTGNPNGPEGL--PKWPPYTD  487


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 66.8 bits (164),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 57/128 (45%), Gaps = 21/128 (16%)

Query  145  LNIIRPTRKSDNEELLPVMIWIFGGGWQQGATADPRYNMSYILRQGALNGKPVLGVSINY  204
            L+I  P    + +   PV+IWI GGGW  G        M+  ++     G  V   SINY
Sbjct  1    LDIYLP---KNAKGPYPVVIWIHGGGWNSGDKEADMGFMTNTVKALLKAGYAV--ASINY  55

Query  205  RVAAFGFLDSEEVRATGNNNLGLRDQRVAMRWVKENIKAFGGDPDKVTIWGESAGAYSVG  264
            R++        + +        ++D + A+R+++ N   +G D +K+ + G SA     G
Sbjct  56   RLST-------DAKFPAQ----IQDVKAAIRFLRANAAKYGIDTNKIALMGFSA-----G  99

Query  265  AHLVANGG  272
             HL    G
Sbjct  100  GHLALLAG  107



Lambda      K        H        a         alpha
   0.318    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 759169424


Query= TCONS_00034567

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             266     6e-83
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  66.8    4e-13


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 266 bits (683),  Expect = 6e-83, Method: Composition-based stats.
 Identities = 150/526 (29%), Positives = 213/526 (40%), Gaps = 101/526 (19%)

Query  64   FLGIKYADQPI---RFTPSSLKTSYAANDSNSGPYDASGTGLALSKGTVLYNATQYGHEC  120
            FLGI YA+ P+   RF P      +            +G            +AT++G  C
Sbjct  28   FLGIPYAEPPVGELRFQPPEPPEPW------------TGV----------RDATKFGPRC  65

Query  121  PGYG---SDETKLVDMGLITLHEDCLNLNIIRPTRKSDNEELLPVMIWIFGGGWQQGATA  177
            P  G   S  +  ++       EDCL LN+  P    +N+  LPVM+WI GGG+  G+ +
Sbjct  66   PQNGDLTSPGSSGLEGS-----EDCLYLNVYTPKELKENKNKLPVMVWIHGGGFMFGSGS  120

Query  178  DPRYNMSYILRQGALNGKPVLGVSINYRVAAFGFL--DSEEVRATGNNNLGLRDQRVAMR  235
               Y+ SY+  +G      V+ V+INYR+   GFL    +E    GN   GL DQ +A+R
Sbjct  121  --LYDGSYLAAEGD-----VIVVTINYRLGPLGFLSTGDDEAP--GN--YGLLDQVLALR  169

Query  236  WVKENIKAFGGDPDKVTIWGESAGAYSVGAHLVANGGDNEGLFRAAIMESGNAVGP----  291
            WV+ENI +FGGDP++VT++GESAGA SV   L++    ++GLF  AI+ SG+A+ P    
Sbjct  170  WVQENIASFGGDPNRVTLFGESAGAASVSLLLLSP--LSKGLFHRAILMSGSALSPWAIQ  227

Query  292  --PWNGTDWHQPMYDRIVNKAGC--STSSDTLQCLREVPYQ-------SLYDIAYEGLEW  340
                            +    GC  S S++ ++CLR  P +        L          
Sbjct  228  SNARQRA-------KELAKLVGCPTSDSAELVECLRSKPAEELLDAQLKLLVYGSVPFVP  280

Query  341  FA-AIDGSFIKEYPQISYTEGRLAKVPILLGSNTDEGTSFGTTGTNTDEECINQLICGFF  399
            F   +DG F+ E+P+     G   KVP+L+G   DEG  F     +      N  I    
Sbjct  281  FGPVVDGDFLPEHPEELLKSGNFPKVPLLIGVTKDEGLLFAAYILD------NVDILKAL  334

Query  400  CRPRQRLVLTMTASKRWVLTREEATR-LLTYYPNDPALGCPYGWGNVTWPKLGLMYKRYE  458
                 R +L        V   EE +  L   Y +             T        +   
Sbjct  335  EEKLLRSLLIDLLYLLLVDLPEEISAALREEYLDWGDRD-----DPETS------RRALV  383

Query  459  SMAGDLTMVAPRRLLAQTMAKYTKQVYSYRWDVPALNTSS--TIGVGHFAENI----TPL  512
             +  D     P    A   A     VY Y +D    +      +GV H  E      TP 
Sbjct  384  ELLTDYLFNCPVIRFADLHASRGTPVYMYSFDYRGSSLRYPKWVGVDHGDELPYVFGTPF  443

Query  513  GTDPSR----LELGNMAARMWTSFVTDLNPNGHGVPRIPQWPKYTP  554
                       +L       WT+F    NPNG      P+WP YT 
Sbjct  444  VGALLFTEEDEKLSRKMMTYWTNFAKTGNPNGPEGL--PKWPPYTD  487


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 66.8 bits (164),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 57/128 (45%), Gaps = 21/128 (16%)

Query  145  LNIIRPTRKSDNEELLPVMIWIFGGGWQQGATADPRYNMSYILRQGALNGKPVLGVSINY  204
            L+I  P    + +   PV+IWI GGGW  G        M+  ++     G  V   SINY
Sbjct  1    LDIYLP---KNAKGPYPVVIWIHGGGWNSGDKEADMGFMTNTVKALLKAGYAV--ASINY  55

Query  205  RVAAFGFLDSEEVRATGNNNLGLRDQRVAMRWVKENIKAFGGDPDKVTIWGESAGAYSVG  264
            R++        + +        ++D + A+R+++ N   +G D +K+ + G SA     G
Sbjct  56   RLST-------DAKFPAQ----IQDVKAAIRFLRANAAKYGIDTNKIALMGFSA-----G  99

Query  265  AHLVANGG  272
             HL    G
Sbjct  100  GHLALLAG  107



Lambda      K        H        a         alpha
   0.318    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 744225144


Query= TCONS_00029748

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             193     1e-57


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 193 bits (492),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 93/346 (27%), Positives = 134/346 (39%), Gaps = 57/346 (16%)

Query  1    MRWVKENIKAFGGDPDKVTIWGESAGAYSVGAHLVANGGDNEGLFRAAIMESGNAVGP--  58
            +RWV+ENI +FGGDP++VT++GESAGA SV   L++    ++GLF  AI+ SG+A+ P  
Sbjct  168  LRWVQENIASFGGDPNRVTLFGESAGAASVSLLLLSP--LSKGLFHRAILMSGSALSPWA  225

Query  59   ----PWNGTDWHQPMYDRIVNKAGC--STSSDTLQCLREVPYQ-------SLYDIAYEGL  105
                              +    GC  S S++ ++CLR  P +        L        
Sbjct  226  IQSNARQRA-------KELAKLVGCPTSDSAELVECLRSKPAEELLDAQLKLLVYGSVPF  278

Query  106  EWFA-AIDGSFIKEYPQISYTEGRLAKVPILLGSNTDEGTSFGTTGTNTDEECINQLISS  164
              F   +DG F+ E+P+     G   KVP+L+G   DEG  F     +        ++ +
Sbjct  279  VPFGPVVDGDFLPEHPEELLKSGNFPKVPLLIGVTKDEGLLFAAYILDNV-----DILKA  333

Query  165  KRWVLTREEATRLLTYYPNDPALGCPYGWGNVTWPKLGLMY-------------KRYESM  211
                L R     LL     D                L   Y             +    +
Sbjct  334  LEEKLLRSLLIDLLYLLLVD--------LPEEISAALREEYLDWGDRDDPETSRRALVEL  385

Query  212  AGDLTMVAPRRLLAQTMAKYTKQVYSYRWDVPALNTSS--TIGVGHFAEIPFVFANPVQN  269
              D     P    A   A     VY Y +D    +      +GV H  E+P+VF  P   
Sbjct  386  LTDYLFNCPVIRFADLHASRGTPVYMYSFDYRGSSLRYPKWVGVDHGDELPYVFGTPF--  443

Query  270  ITPLGTDPSRLELGNMAARMWTSFVTDLNPNGHGVPRIPQWPKYTP  315
            +  L       +L       WT+F    NPNG      P+WP YT 
Sbjct  444  VGALLFTEEDEKLSRKMMTYWTNFAKTGNPNGPEGL--PKWPPYTD  487



Lambda      K        H        a         alpha
   0.317    0.135    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00029747

Length=168
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             139     4e-40


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 139 bits (353),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 56/162 (35%), Positives = 82/162 (51%), Gaps = 25/162 (15%)

Query  1    MRWVKENIKAFGGDPDKVTIWGESAGAYSVGAHLVANGGDNEGLFRAAIMESGNAVGP--  58
            +RWV+ENI +FGGDP++VT++GESAGA SV   L++    ++GLF  AI+ SG+A+ P  
Sbjct  168  LRWVQENIASFGGDPNRVTLFGESAGAASVSLLLLSP--LSKGLFHRAILMSGSALSPWA  225

Query  59   ----PWNGTDWHQPMYDRIVNKAGC--STSSDTLQCLREVPYQ-------SLYDIAYEGL  105
                              +    GC  S S++ ++CLR  P +        L        
Sbjct  226  IQSNARQRA-------KELAKLVGCPTSDSAELVECLRSKPAEELLDAQLKLLVYGSVPF  278

Query  106  EWFA-AIDGSFIKEYPQISYTEGRLAKVPILLGSNTDEGTSF  146
              F   +DG F+ E+P+     G   KVP+L+G   DEG  F
Sbjct  279  VPFGPVVDGDFLPEHPEELLKSGNFPKVPLLIGVTKDEGLLF  320



Lambda      K        H        a         alpha
   0.315    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00034568

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             88.1    1e-20


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 88.1 bits (219),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 49/155 (32%), Positives = 72/155 (46%), Gaps = 40/155 (26%)

Query  64   FLGIKYADQPI---RFTPSSLKTSYAANDSNSGPYDASGTGLALSKGTVLYNATQYGHEC  120
            FLGI YA+ P+   RF P      +            +G            +AT++G  C
Sbjct  28   FLGIPYAEPPVGELRFQPPEPPEPW------------TGV----------RDATKFGPRC  65

Query  121  PGYG---SDETKLVDMGLITLHEDCLNLNIIRPTRKSDNEELLPVMIWIFGGGWQQGATA  177
            P  G   S  +  ++       EDCL LN+  P    +N+  LPVM+WI GGG+  G+ +
Sbjct  66   PQNGDLTSPGSSGLEGS-----EDCLYLNVYTPKELKENKNKLPVMVWIHGGGFMFGSGS  120

Query  178  DPRYNMSYILRQGALNGKPVLGVSINYRVAAFGFL  212
               Y+ SY+  +G      V+ V+INYR+   GFL
Sbjct  121  --LYDGSYLAAEGD-----VIVVTINYRLGPLGFL  148



Lambda      K        H        a         alpha
   0.318    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00034569

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             165     2e-48
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  66.0    2e-13


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 165 bits (421),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 84/225 (37%), Positives = 119/225 (53%), Gaps = 50/225 (22%)

Query  64   FLGIKYADQPI---RFTPSSLKTSYAANDSNSGPYDASGTGLALSKGTVLYNATQYGHEC  120
            FLGI YA+ P+   RF P      +            +G            +AT++G  C
Sbjct  28   FLGIPYAEPPVGELRFQPPEPPEPW------------TGV----------RDATKFGPRC  65

Query  121  PGYG---SDETKLVDMGLITLHEDCLNLNIIRPTRKSDNEELLPVMIWIFGGGWQQGATA  177
            P  G   S  +  ++       EDCL LN+  P    +N+  LPVM+WI GGG+  G+ +
Sbjct  66   PQNGDLTSPGSSGLEGS-----EDCLYLNVYTPKELKENKNKLPVMVWIHGGGFMFGSGS  120

Query  178  DPRYNMSYILRQGALNGKPVLGVSINYRVAAFGFL---DSEEVRATGNNNLGLRDQRVAM  234
               Y+ SY+  +G      V+ V+INYR+   GFL   D E   A GN   GL DQ +A+
Sbjct  121  --LYDGSYLAAEGD-----VIVVTINYRLGPLGFLSTGDDE---APGN--YGLLDQVLAL  168

Query  235  RWVKENIKAFGGDPDKVTIWGESAGAYSVGAHLVANGGDNEGLFR  279
            RWV+ENI +FGGDP++VT++GESAGA SV   L++    ++GLF 
Sbjct  169  RWVQENIASFGGDPNRVTLFGESAGAASVSLLLLSP--LSKGLFH  211


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 66.0 bits (162),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 57/128 (45%), Gaps = 21/128 (16%)

Query  145  LNIIRPTRKSDNEELLPVMIWIFGGGWQQGATADPRYNMSYILRQGALNGKPVLGVSINY  204
            L+I  P    + +   PV+IWI GGGW  G        M+  ++     G  V   SINY
Sbjct  1    LDIYLP---KNAKGPYPVVIWIHGGGWNSGDKEADMGFMTNTVKALLKAGYAV--ASINY  55

Query  205  RVAAFGFLDSEEVRATGNNNLGLRDQRVAMRWVKENIKAFGGDPDKVTIWGESAGAYSVG  264
            R+       S + +        ++D + A+R+++ N   +G D +K+ + G SA     G
Sbjct  56   RL-------STDAKFPAQ----IQDVKAAIRFLRANAAKYGIDTNKIALMGFSA-----G  99

Query  265  AHLVANGG  272
             HL    G
Sbjct  100  GHLALLAG  107



Lambda      K        H        a         alpha
   0.316    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00034570

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             153     8e-44
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  61.4    5e-12


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 153 bits (388),  Expect = 8e-44, Method: Composition-based stats.
 Identities = 76/204 (37%), Positives = 107/204 (52%), Gaps = 48/204 (24%)

Query  64   FLGIKYADQPI---RFTPSSLKTSYAANDSNSGPYDASGTGLALSKGTVLYNATQYGHEC  120
            FLGI YA+ P+   RF P      +            +G            +AT++G  C
Sbjct  28   FLGIPYAEPPVGELRFQPPEPPEPW------------TGV----------RDATKFGPRC  65

Query  121  PGYG---SDETKLVDMGLITLHEDCLNLNIIRPTRKSDNEELLPVMIWIFGGGWQQGATA  177
            P  G   S  +  ++       EDCL LN+  P    +N+  LPVM+WI GGG+  G+ +
Sbjct  66   PQNGDLTSPGSSGLEGS-----EDCLYLNVYTPKELKENKNKLPVMVWIHGGGFMFGSGS  120

Query  178  DPRYNMSYILRQGALNGKPVLGVSINYRVAAFGFL---DSEEVRATGNNNLGLRDQRVAM  234
               Y+ SY+  +G      V+ V+INYR+   GFL   D E   A GN   GL DQ +A+
Sbjct  121  --LYDGSYLAAEGD-----VIVVTINYRLGPLGFLSTGDDE---APGN--YGLLDQVLAL  168

Query  235  RWVKENIKAFGGDPDKVTIWGESA  258
            RWV+ENI +FGGDP++VT++GESA
Sbjct  169  RWVQENIASFGGDPNRVTLFGESA  192


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 61.4 bits (150),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query  145  LNIIRPTRKSDNEELLPVMIWIFGGGWQQGATADPRYNMSYILRQGALNGKPVLGVSINY  204
            L+I  P    + +   PV+IWI GGGW  G        M+  ++     G  V   SINY
Sbjct  1    LDIYLP---KNAKGPYPVVIWIHGGGWNSGDKEADMGFMTNTVKALLKAGYAV--ASINY  55

Query  205  RVAAFGFLDSEEVRATGNNNLGLRDQRVAMRWVKENIKAFGGDPDKVTIWGESA  258
            R++        + +        ++D + A+R+++ N   +G D +K+ + G SA
Sbjct  56   RLST-------DAKFPAQ----IQDVKAAIRFLRANAAKYGIDTNKIALMGFSA  98



Lambda      K        H        a         alpha
   0.316    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00034571

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             165     2e-48
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  66.0    2e-13


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 165 bits (421),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 84/225 (37%), Positives = 119/225 (53%), Gaps = 50/225 (22%)

Query  64   FLGIKYADQPI---RFTPSSLKTSYAANDSNSGPYDASGTGLALSKGTVLYNATQYGHEC  120
            FLGI YA+ P+   RF P      +            +G            +AT++G  C
Sbjct  28   FLGIPYAEPPVGELRFQPPEPPEPW------------TGV----------RDATKFGPRC  65

Query  121  PGYG---SDETKLVDMGLITLHEDCLNLNIIRPTRKSDNEELLPVMIWIFGGGWQQGATA  177
            P  G   S  +  ++       EDCL LN+  P    +N+  LPVM+WI GGG+  G+ +
Sbjct  66   PQNGDLTSPGSSGLEGS-----EDCLYLNVYTPKELKENKNKLPVMVWIHGGGFMFGSGS  120

Query  178  DPRYNMSYILRQGALNGKPVLGVSINYRVAAFGFL---DSEEVRATGNNNLGLRDQRVAM  234
               Y+ SY+  +G      V+ V+INYR+   GFL   D E   A GN   GL DQ +A+
Sbjct  121  --LYDGSYLAAEGD-----VIVVTINYRLGPLGFLSTGDDE---APGN--YGLLDQVLAL  168

Query  235  RWVKENIKAFGGDPDKVTIWGESAGAYSVGAHLVANGGDNEGLFR  279
            RWV+ENI +FGGDP++VT++GESAGA SV   L++    ++GLF 
Sbjct  169  RWVQENIASFGGDPNRVTLFGESAGAASVSLLLLSP--LSKGLFH  211


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 66.0 bits (162),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 57/128 (45%), Gaps = 21/128 (16%)

Query  145  LNIIRPTRKSDNEELLPVMIWIFGGGWQQGATADPRYNMSYILRQGALNGKPVLGVSINY  204
            L+I  P    + +   PV+IWI GGGW  G        M+  ++     G  V   SINY
Sbjct  1    LDIYLP---KNAKGPYPVVIWIHGGGWNSGDKEADMGFMTNTVKALLKAGYAV--ASINY  55

Query  205  RVAAFGFLDSEEVRATGNNNLGLRDQRVAMRWVKENIKAFGGDPDKVTIWGESAGAYSVG  264
            R+       S + +        ++D + A+R+++ N   +G D +K+ + G SA     G
Sbjct  56   RL-------STDAKFPAQ----IQDVKAAIRFLRANAAKYGIDTNKIALMGFSA-----G  99

Query  265  AHLVANGG  272
             HL    G
Sbjct  100  GHLALLAG  107



Lambda      K        H        a         alpha
   0.316    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00029749

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             183     3e-54
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  66.0    3e-13


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 183 bits (466),  Expect = 3e-54, Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 127/236 (54%), Gaps = 48/236 (20%)

Query  64   FLGIKYADQPI---RFTPSSLKTSYAANDSNSGPYDASGTGLALSKGTVLYNATQYGHEC  120
            FLGI YA+ P+   RF P      +            +G            +AT++G  C
Sbjct  28   FLGIPYAEPPVGELRFQPPEPPEPW------------TGV----------RDATKFGPRC  65

Query  121  PGYG---SDETKLVDMGLITLHEDCLNLNIIRPTRKSDNEELLPVMIWIFGGGWQQGATA  177
            P  G   S  +  ++       EDCL LN+  P    +N+  LPVM+WI GGG+  G+ +
Sbjct  66   PQNGDLTSPGSSGLEGS-----EDCLYLNVYTPKELKENKNKLPVMVWIHGGGFMFGSGS  120

Query  178  DPRYNMSYILRQGALNGKPVLGVSINYRVAAFGFL--DSEEVRATGNNNLGLRDQRVAMR  235
               Y+ SY+  +G      V+ V+INYR+   GFL    +E    GN   GL DQ +A+R
Sbjct  121  --LYDGSYLAAEGD-----VIVVTINYRLGPLGFLSTGDDEAP--GN--YGLLDQVLALR  169

Query  236  WVKENIKAFGGDPDKVTIWGESAGAYSVGAHLVANGGDNEGLFRAAIMESGNAVGP  291
            WV+ENI +FGGDP++VT++GESAGA SV   L++    ++GLF  AI+ SG+A+ P
Sbjct  170  WVQENIASFGGDPNRVTLFGESAGAASVSLLLLSP--LSKGLFHRAILMSGSALSP  223


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 66.0 bits (162),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 57/128 (45%), Gaps = 21/128 (16%)

Query  145  LNIIRPTRKSDNEELLPVMIWIFGGGWQQGATADPRYNMSYILRQGALNGKPVLGVSINY  204
            L+I  P    + +   PV+IWI GGGW  G        M+  ++     G  V   SINY
Sbjct  1    LDIYLP---KNAKGPYPVVIWIHGGGWNSGDKEADMGFMTNTVKALLKAGYAV--ASINY  55

Query  205  RVAAFGFLDSEEVRATGNNNLGLRDQRVAMRWVKENIKAFGGDPDKVTIWGESAGAYSVG  264
            R++        + +        ++D + A+R+++ N   +G D +K+ + G SA     G
Sbjct  56   RLST-------DAKFPAQ----IQDVKAAIRFLRANAAKYGIDTNKIALMGFSA-----G  99

Query  265  AHLVANGG  272
             HL    G
Sbjct  100  GHLALLAG  107



Lambda      K        H        a         alpha
   0.316    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00029750

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395084 pfam00135, COesterase, Carboxylesterase family             280     6e-88
CDD:466583 pfam20434, BD-FAE, BD-FAE. This family represents a no...  66.8    5e-13


>CDD:395084 pfam00135, COesterase, Carboxylesterase family.  
Length=513

 Score = 280 bits (718),  Expect = 6e-88, Method: Composition-based stats.
 Identities = 153/526 (29%), Positives = 220/526 (42%), Gaps = 91/526 (17%)

Query  64   FLGIKYADQPI---RFTPSSLKTSYAANDSNSGPYDASGTGLALSKGTVLYNATQYGHEC  120
            FLGI YA+ P+   RF P      +            +G            +AT++G  C
Sbjct  28   FLGIPYAEPPVGELRFQPPEPPEPW------------TGV----------RDATKFGPRC  65

Query  121  PGYG---SDETKLVDMGLITLHEDCLNLNIIRPTRKSDNEELLPVMIWIFGGGWQQGATA  177
            P  G   S  +  ++       EDCL LN+  P    +N+  LPVM+WI GGG+  G+ +
Sbjct  66   PQNGDLTSPGSSGLEGS-----EDCLYLNVYTPKELKENKNKLPVMVWIHGGGFMFGSGS  120

Query  178  DPRYNMSYILRQGALNGKPVLGVSINYRVAAFGFLDSEEVRATGNNNLGLRDQRVAMRWV  237
               Y+ SY+  +G      V+ V+INYR+   GFL + +  A GN   GL DQ +A+RWV
Sbjct  121  --LYDGSYLAAEGD-----VIVVTINYRLGPLGFLSTGDDEAPGN--YGLLDQVLALRWV  171

Query  238  KENIKAFGGDPDKVTIWGESAGAYSVGAHLVANGGDNEGLFRAAIMESGNAVGP------  291
            +ENI +FGGDP++VT++GESAGA SV   L++    ++GLF  AI+ SG+A+ P      
Sbjct  172  QENIASFGGDPNRVTLFGESAGAASVSLLLLSP--LSKGLFHRAILMSGSALSPWAIQSN  229

Query  292  PWNGTDWHQPMYDRIVNKAGC--STSSDTLQCLREVPYQ-------SLYDIAYEGLEWFA  342
                          +    GC  S S++ ++CLR  P +        L          F 
Sbjct  230  ARQRA-------KELAKLVGCPTSDSAELVECLRSKPAEELLDAQLKLLVYGSVPFVPFG  282

Query  343  -AIDGSFIKEYPQISYTEGRLAKVPILLGSNTDEGTSFGTTGTNTDEECINQLICGFFCR  401
              +DG F+ E+P+     G   KVP+L+G   DEG  F     +      N  I      
Sbjct  283  PVVDGDFLPEHPEELLKSGNFPKVPLLIGVTKDEGLLFAAYILD------NVDILKALEE  336

Query  402  PRQRLVLTMTASKRWVLTREEATR-LLTYYPNDPALGCPYGWGNVTWPKLGLMYKRYESM  460
               R +L        V   EE +  L   Y +             T        +    +
Sbjct  337  KLLRSLLIDLLYLLLVDLPEEISAALREEYLDWGDRD-----DPETS------RRALVEL  385

Query  461  AGDLTMVAPRRLLAQTMAKYTKQVYSYRWDVPALNTSS--TIGVGHFAEIPFVFANPVQN  518
              D     P    A   A     VY Y +D    +      +GV H  E+P+VF  P   
Sbjct  386  LTDYLFNCPVIRFADLHASRGTPVYMYSFDYRGSSLRYPKWVGVDHGDELPYVFGTPF--  443

Query  519  ITPLGTDPSRLELGNMAARMWTSFVTDLNPNGHGVPRIPQWPKYTP  564
            +  L       +L       WT+F    NPNG      P+WP YT 
Sbjct  444  VGALLFTEEDEKLSRKMMTYWTNFAKTGNPNGPEGL--PKWPPYTD  487


>CDD:466583 pfam20434, BD-FAE, BD-FAE.  This family represents a novel bifunctional 
feruloyl and acetyl xylan esterase (BD-FAE, previously 
known as bifunctional carbohydrate esterase (CE)), which 
is active on complex natural xylans and was identified as 
the basis of a monophyletic clade gathering all homologs identified 
in PULs (polysaccharide utilisation loci) predicted 
to act on xylan. It adopts an alpha-beta-hydrolase fold with 
the catalytic triad Ser-Asp-His. This new family of proteins 
is a new candidate for biomass processing due to its capacity 
to remove ferulic acid and acetic acid from natural corn 
and birchwood xylan substrates.
Length=215

 Score = 66.8 bits (164),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 57/128 (45%), Gaps = 21/128 (16%)

Query  145  LNIIRPTRKSDNEELLPVMIWIFGGGWQQGATADPRYNMSYILRQGALNGKPVLGVSINY  204
            L+I  P    + +   PV+IWI GGGW  G        M+  ++     G  V   SINY
Sbjct  1    LDIYLP---KNAKGPYPVVIWIHGGGWNSGDKEADMGFMTNTVKALLKAGYAV--ASINY  55

Query  205  RVAAFGFLDSEEVRATGNNNLGLRDQRVAMRWVKENIKAFGGDPDKVTIWGESAGAYSVG  264
            R++        + +        ++D + A+R+++ N   +G D +K+ + G SA     G
Sbjct  56   RLST-------DAKFPAQ----IQDVKAAIRFLRANAAKYGIDTNKIALMGFSA-----G  99

Query  265  AHLVANGG  272
             HL    G
Sbjct  100  GHLALLAG  107



Lambda      K        H        a         alpha
   0.318    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0785    0.140     1.90     42.6     43.6 

Effective search space used: 759169424


Query= TCONS_00034572

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00029751

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00029752

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431357 pfam10558, MTP18, Mitochondrial 18 KDa protein (MTP18)...  326     4e-113


>CDD:431357 pfam10558, MTP18, Mitochondrial 18 KDa protein (MTP18).  This 
family of proteins are mitochondrial 18KDa proteins that are 
often misannotated as carbonic anhydrases. It was shown that 
knockdown of MTP18 protein results in a cytochrome c release 
from mitochondria and consequently leads to apoptosis. Overexpression 
studies suggest that MTP18 is required for mitochondrial 
fission.
Length=169

 Score = 326 bits (837),  Expect = 4e-113, Method: Composition-based stats.
 Identities = 125/192 (65%), Positives = 141/192 (73%), Gaps = 23/192 (12%)

Query  96   YRYAGYVNRIRTILLSAHRYVAYTSDIGESFRPVAHPYLVRTAYGISWTYLFGDVAHEGY  155
             RYA Y NR+RTILLSAHRYVAYTSDIGESFRPVAHPYLVR AYG+SW Y+ GDV++EGY
Sbjct  1    LRYAAYANRLRTILLSAHRYVAYTSDIGESFRPVAHPYLVRAAYGVSWAYILGDVSYEGY  60

Query  156  KAYLRNRHVLAPPGEAYKDAKDLSANEVVMGMATGDMGSPSAGTDAELAPWPTTRIPLIE  215
            KAYLRN+  L P  E +KDA                          +LAP P +++PL+E
Sbjct  61   KAYLRNQRPLDPSLEPWKDA-----------------------PPDDLAPLPPSKVPLLE  97

Query  216  DYRMVMVKRAVFQSIASMGLPAFTIHSVVKYSGQMMKNNKNVFVRTWTPIGLGLAVVPFL  275
            DYR VM KRAVFQSIASMGLPAFTIHSVV+YSG+  KN KN  +RTW PIGLGLAVVP L
Sbjct  98   DYRTVMAKRAVFQSIASMGLPAFTIHSVVRYSGRAFKNVKNPRIRTWGPIGLGLAVVPAL  157

Query  276  PYIFDEPVGEAV  287
            PY+FDEPV  AV
Sbjct  158  PYLFDEPVEHAV  169



Lambda      K        H        a         alpha
   0.317    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00034573

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00029753

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00029754

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00029756

Length=309


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00029758

Length=502


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00029757

Length=521


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 651048380


Query= TCONS_00029759

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460911 pfam03399, SAC3_GANP, SAC3/GANP family. This family in...  91.4    5e-21


>CDD:460911 pfam03399, SAC3_GANP, SAC3/GANP family.  This family includes 
diverse proteins involved in large complexes. The alignment 
contains one highly conserved negatively charged residue and 
one highly conserved positively charged residue that are probably 
important for the function of these proteins. The family 
includes the yeast nuclear export factor Sac3, and mammalian 
GANP/MCM3-associated proteins, which facilitate the nuclear 
localization of MCM3, a protein that associates with chromatin 
in the G1 phase of the cell-cycle.
Length=287

 Score = 91.4 bits (228),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 86/202 (43%), Gaps = 29/202 (14%)

Query  309  YGYICDQFKSLRQDLTVQHIRNEFTVSVYEIHARIAL-------EKGDLGEYNQ------  355
            + +I D+ +S+RQD T+Q++     V   E   R  +       E+    E++       
Sbjct  82   HDFIWDRTRSIRQDFTIQNLSGPEAVDCLERIVRFHILSLHRLCEEPV--EFDPQQNLEQ  139

Query  356  ---CQTQLRALYAQNLGGHPT-----EFKAYRILYFIHTRNWTAMNDALADLTAADKRDP  407
               C   L  +Y    G         EF+AY +L   +  +   + +    L +  ++ P
Sbjct  140  LQKCLQSLLEIYDDLRGKGIPCPNEAEFRAYYLLL--NLGDPDILREVQ-QLPSEIRKSP  196

Query  408  AVKHALDVRSALALGNYHRFFQLYLDTPNMGAYLMDMFVDRERLSALAAICKAYKP---D  464
             V+ AL +R AL   NY RFF+L      + A L++   +  R  AL A+ +AY      
Sbjct  197  EVQFALKLRRALQNNNYVRFFRLVRQVSYLMACLLERHFNEVRRYALKALNRAYSSKNKP  256

Query  465  VKIRFITEELGFESDEQSARFI  486
              +  +   LGF+ +E++  F 
Sbjct  257  FPLSDLARLLGFDDEEEAIEFC  278



Lambda      K        H        a         alpha
   0.317    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 666189040


Query= TCONS_00029760

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460911 pfam03399, SAC3_GANP, SAC3/GANP family. This family in...  91.8    4e-21


>CDD:460911 pfam03399, SAC3_GANP, SAC3/GANP family.  This family includes 
diverse proteins involved in large complexes. The alignment 
contains one highly conserved negatively charged residue and 
one highly conserved positively charged residue that are probably 
important for the function of these proteins. The family 
includes the yeast nuclear export factor Sac3, and mammalian 
GANP/MCM3-associated proteins, which facilitate the nuclear 
localization of MCM3, a protein that associates with chromatin 
in the G1 phase of the cell-cycle.
Length=287

 Score = 91.8 bits (229),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 86/202 (43%), Gaps = 29/202 (14%)

Query  291  YGYICDQFKSLRQDLTVQHIRNEFTVSVYEIHARIAL-------EKGDLGEYNQ------  337
            + +I D+ +S+RQD T+Q++     V   E   R  +       E+    E++       
Sbjct  82   HDFIWDRTRSIRQDFTIQNLSGPEAVDCLERIVRFHILSLHRLCEEPV--EFDPQQNLEQ  139

Query  338  ---CQTQLRALYAQNLGGHPT-----EFKAYRILYFIHTRNWTAMNDALADLTAADKRDP  389
               C   L  +Y    G         EF+AY +L   +  +   + +    L +  ++ P
Sbjct  140  LQKCLQSLLEIYDDLRGKGIPCPNEAEFRAYYLLL--NLGDPDILREVQ-QLPSEIRKSP  196

Query  390  AVKHALDVRSALALGNYHRFFQLYLDTPNMGAYLMDMFVDRERLSALAAICKAYKP---D  446
             V+ AL +R AL   NY RFF+L      + A L++   +  R  AL A+ +AY      
Sbjct  197  EVQFALKLRRALQNNNYVRFFRLVRQVSYLMACLLERHFNEVRRYALKALNRAYSSKNKP  256

Query  447  VKIRFITEELGFESDEQSARFI  468
              +  +   LGF+ +E++  F 
Sbjct  257  FPLSDLARLLGFDDEEEAIEFC  278



Lambda      K        H        a         alpha
   0.316    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 638935852


Query= TCONS_00029762

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460911 pfam03399, SAC3_GANP, SAC3/GANP family. This family in...  78.7    7e-17


>CDD:460911 pfam03399, SAC3_GANP, SAC3/GANP family.  This family includes 
diverse proteins involved in large complexes. The alignment 
contains one highly conserved negatively charged residue and 
one highly conserved positively charged residue that are probably 
important for the function of these proteins. The family 
includes the yeast nuclear export factor Sac3, and mammalian 
GANP/MCM3-associated proteins, which facilitate the nuclear 
localization of MCM3, a protein that associates with chromatin 
in the G1 phase of the cell-cycle.
Length=287

 Score = 78.7 bits (195),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 43/173 (25%), Positives = 74/173 (43%), Gaps = 26/173 (15%)

Query  309  YGYICDQFKSLRQDLTVQHIRNEFTVSVYEIHARIAL-------EKGDLGEYNQ------  355
            + +I D+ +S+RQD T+Q++     V   E   R  +       E+    E++       
Sbjct  82   HDFIWDRTRSIRQDFTIQNLSGPEAVDCLERIVRFHILSLHRLCEEPV--EFDPQQNLEQ  139

Query  356  ---CQTQLRALYAQNLGGHPT-----EFKAYRILYFIHTRNWTAMNDALADLTAADKRDP  407
               C   L  +Y    G         EF+AY +L   +  +   + +    L +  ++ P
Sbjct  140  LQKCLQSLLEIYDDLRGKGIPCPNEAEFRAYYLLL--NLGDPDILREVQ-QLPSEIRKSP  196

Query  408  AVKHALDVRSALALGNYHRFFQLYLDTPNMGAYLMDMFVDRERLSALAAICKA  460
             V+ AL +R AL   NY RFF+L      + A L++   +  R  AL A+ +A
Sbjct  197  EVQFALKLRRALQNNNYVRFFRLVRQVSYLMACLLERHFNEVRRYALKALNRA  249



Lambda      K        H        a         alpha
   0.317    0.130    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00034576

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460911 pfam03399, SAC3_GANP, SAC3/GANP family. This family in...  91.4    5e-21


>CDD:460911 pfam03399, SAC3_GANP, SAC3/GANP family.  This family includes 
diverse proteins involved in large complexes. The alignment 
contains one highly conserved negatively charged residue and 
one highly conserved positively charged residue that are probably 
important for the function of these proteins. The family 
includes the yeast nuclear export factor Sac3, and mammalian 
GANP/MCM3-associated proteins, which facilitate the nuclear 
localization of MCM3, a protein that associates with chromatin 
in the G1 phase of the cell-cycle.
Length=287

 Score = 91.4 bits (228),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 86/202 (43%), Gaps = 29/202 (14%)

Query  309  YGYICDQFKSLRQDLTVQHIRNEFTVSVYEIHARIAL-------EKGDLGEYNQ------  355
            + +I D+ +S+RQD T+Q++     V   E   R  +       E+    E++       
Sbjct  82   HDFIWDRTRSIRQDFTIQNLSGPEAVDCLERIVRFHILSLHRLCEEPV--EFDPQQNLEQ  139

Query  356  ---CQTQLRALYAQNLGGHPT-----EFKAYRILYFIHTRNWTAMNDALADLTAADKRDP  407
               C   L  +Y    G         EF+AY +L   +  +   + +    L +  ++ P
Sbjct  140  LQKCLQSLLEIYDDLRGKGIPCPNEAEFRAYYLLL--NLGDPDILREVQ-QLPSEIRKSP  196

Query  408  AVKHALDVRSALALGNYHRFFQLYLDTPNMGAYLMDMFVDRERLSALAAICKAYKP---D  464
             V+ AL +R AL   NY RFF+L      + A L++   +  R  AL A+ +AY      
Sbjct  197  EVQFALKLRRALQNNNYVRFFRLVRQVSYLMACLLERHFNEVRRYALKALNRAYSSKNKP  256

Query  465  VKIRFITEELGFESDEQSARFI  486
              +  +   LGF+ +E++  F 
Sbjct  257  FPLSDLARLLGFDDEEEAIEFC  278



Lambda      K        H        a         alpha
   0.317    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 666189040


Query= TCONS_00034577

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460911 pfam03399, SAC3_GANP, SAC3/GANP family. This family in...  66.8    8e-13


>CDD:460911 pfam03399, SAC3_GANP, SAC3/GANP family.  This family includes 
diverse proteins involved in large complexes. The alignment 
contains one highly conserved negatively charged residue and 
one highly conserved positively charged residue that are probably 
important for the function of these proteins. The family 
includes the yeast nuclear export factor Sac3, and mammalian 
GANP/MCM3-associated proteins, which facilitate the nuclear 
localization of MCM3, a protein that associates with chromatin 
in the G1 phase of the cell-cycle.
Length=287

 Score = 66.8 bits (164),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 39/197 (20%), Positives = 66/197 (34%), Gaps = 71/197 (36%)

Query  309  YGYICDQFKSLRQDLTVQHIRNEFTVSVYE------IHAR--------------------  342
            + +I D+ +S+RQD T+Q++     V   E      I +                     
Sbjct  82   HDFIWDRTRSIRQDFTIQNLSGPEAVDCLERIVRFHILSLHRLCEEPVEFDPQQNLEQLQ  141

Query  343  --------------------------------IALEKGDLDKR----------DPAVKHA  360
                                            + L   D+ +            P V+ A
Sbjct  142  KCLQSLLEIYDDLRGKGIPCPNEAEFRAYYLLLNLGDPDILREVQQLPSEIRKSPEVQFA  201

Query  361  LDVRSALALGNYHRFFQLYLDTPNMGAYLMDMFVDRERLSALAAICKAYKP---DVKIRF  417
            L +R AL   NY RFF+L      + A L++   +  R  AL A+ +AY        +  
Sbjct  202  LKLRRALQNNNYVRFFRLVRQVSYLMACLLERHFNEVRRYALKALNRAYSSKNKPFPLSD  261

Query  418  ITEELGFESDEQSARFI  434
            +   LGF+ +E++  F 
Sbjct  262  LARLLGFDDEEEAIEFC  278



Lambda      K        H        a         alpha
   0.316    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00029761

Length=442
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460911 pfam03399, SAC3_GANP, SAC3/GANP family. This family in...  79.1    5e-17


>CDD:460911 pfam03399, SAC3_GANP, SAC3/GANP family.  This family includes 
diverse proteins involved in large complexes. The alignment 
contains one highly conserved negatively charged residue and 
one highly conserved positively charged residue that are probably 
important for the function of these proteins. The family 
includes the yeast nuclear export factor Sac3, and mammalian 
GANP/MCM3-associated proteins, which facilitate the nuclear 
localization of MCM3, a protein that associates with chromatin 
in the G1 phase of the cell-cycle.
Length=287

 Score = 79.1 bits (196),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 43/173 (25%), Positives = 74/173 (43%), Gaps = 26/173 (15%)

Query  291  YGYICDQFKSLRQDLTVQHIRNEFTVSVYEIHARIAL-------EKGDLGEYNQ------  337
            + +I D+ +S+RQD T+Q++     V   E   R  +       E+    E++       
Sbjct  82   HDFIWDRTRSIRQDFTIQNLSGPEAVDCLERIVRFHILSLHRLCEEPV--EFDPQQNLEQ  139

Query  338  ---CQTQLRALYAQNLGGHPT-----EFKAYRILYFIHTRNWTAMNDALADLTAADKRDP  389
               C   L  +Y    G         EF+AY +L   +  +   + +    L +  ++ P
Sbjct  140  LQKCLQSLLEIYDDLRGKGIPCPNEAEFRAYYLLL--NLGDPDILREVQ-QLPSEIRKSP  196

Query  390  AVKHALDVRSALALGNYHRFFQLYLDTPNMGAYLMDMFVDRERLSALAAICKA  442
             V+ AL +R AL   NY RFF+L      + A L++   +  R  AL A+ +A
Sbjct  197  EVQFALKLRRALQNNNYVRFFRLVRQVSYLMACLLERHFNEVRRYALKALNRA  249



Lambda      K        H        a         alpha
   0.316    0.130    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 539863808


Query= TCONS_00029763

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397872 pfam03969, AFG1_ATPase, AFG1-like ATPase. This P-loop ...  242     3e-79


>CDD:397872 pfam03969, AFG1_ATPase, AFG1-like ATPase.  This P-loop motif-containing 
family of proteins includes AFG1, LACE1 and ZapE. 
ATPase family gene 1 (AFG1) is a 377 amino acid yeast protein 
with an ATPase motif typical of the family. LACE1, the mammalian 
homolog of AFG1, is a mitochondrial integral membrane 
protein that is essential for maintenance of fused mitochondrial 
reticulum and lamellar cristae morphology. It has also 
been demonstrated that LACE1 mediates degradation of nuclear-encoded 
complex IV subunits COX4 (cytochrome c oxidase 4), 
COX5A and COX6A, and is required for normal activity of complexes 
III and IV of the respiratory chain. ZapE is a cell 
division protein found in Gram-negative bacteria. The bacterial 
cell division process relies on the assembly, positioning, 
and constriction of FtsZ ring (the so-called Z-ring), a ring-like 
network that marks the future site of the septum of 
bacterial cell division. ZapE is a Z-ring associated protein 
required for cell division under low-oxygen conditions. It 
is an ATPase that appears at the constricting Z-ring late in 
cell division. It reduces the stability of FtsZ polymers in 
the presence of ATP in vitro.
Length=361

 Score = 242 bits (618),  Expect = 3e-79, Method: Composition-based stats.
 Identities = 101/261 (39%), Positives = 143/261 (55%), Gaps = 7/261 (3%)

Query  1    MYGDVGCGKTMLMDLFYETLPANIKSKSRIHFHNFMQDVHKRMHVVKMQYGNDFDALPLV  60
            ++G VG GKT LMDLF+E+LP   + K R HFH FM  VH  +  ++       D L ++
Sbjct  66   LWGGVGRGKTWLMDLFFESLP--GEKKRRTHFHRFMFRVHDELTTLQGGV----DPLAII  119

Query  61   AANIADLSSVLCFDEFQCTDVADAMILRRLLESLMSHGVVLVTTSNRHPDDLYKNGIQRK  120
            A  +A  + +LCFDEF  +D+ DAM+L RL E+L + GV LV TSN  P+ LYKNG+QR 
Sbjct  120  ADRLAGEARLLCFDEFFVSDIGDAMLLGRLFEALFARGVTLVATSNIAPEQLYKNGLQRA  179

Query  121  SFIPCINLLKTALTVINLNSPTDYRKMPRPPAAVYHHPLGPEADRHAQKWYEFLGDPNDP  180
             F+P I+LLK+   V+N++   DYR      A ++ +PL         + ++ LG     
Sbjct  180  RFLPAIDLLKSHCEVVNVDGGVDYRLRTLRQAELWLYPLDGYCWAAMDRLWDALGLGEPE  239

Query  181  PHPETQEVWGRKIKVPSASGKAARFTFQELIGSATGAADYLELVRNYEAFIVTDVPGMTL  240
            P   T EV  R ++  +  G    F+F  L  +A    DYL L   +    + DVP MT 
Sbjct  240  PLS-TLEVNARALRARAVGGDLVWFSFACLCQAARSQNDYLALAERFHTVFLEDVPQMTR  298

Query  241  QQRDLARRFITFIDAVYESRV  261
               D ARRFI  +D +Y+  V
Sbjct  299  CSDDAARRFIALVDELYDRDV  319



Lambda      K        H        a         alpha
   0.322    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00034578

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  57.6    1e-11


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 57.6 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 20/49 (41%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query  161  IVQYDFQAERPDELDAKAGEAIIVIAQSNPEWFVAKPIGRLGGPGLIPV  209
            +  YD+ A+ PDEL  K G+ IIV+ +S   W+  +  G  G  GLIP 
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKG--GKEGLIPS  47



Lambda      K        H        a         alpha
   0.315    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00029764

Length=316
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  57.6    6e-12


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 57.6 bits (140),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 20/49 (41%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query  161  IVQYDFQAERPDELDAKAGEAIIVIAQSNPEWFVAKPIGRLGGPGLIPV  209
            +  YD+ A+ PDEL  K G+ IIV+ +S   W+  +  G  G  GLIP 
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKG--GKEGLIPS  47



Lambda      K        H        a         alpha
   0.315    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00029765

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.151    0.502    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00034579

Length=170
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  57.6    1e-12


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 57.6 bits (140),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 20/49 (41%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query  15  IVQYDFQAERPDELDAKAGEAIIVIAQSNPEWFVAKPIGRLGGPGLIPV  63
           +  YD+ A+ PDEL  K G+ IIV+ +S   W+  +  G  G  GLIP 
Sbjct  1   VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKG--GKEGLIPS  47



Lambda      K        H        a         alpha
   0.316    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00029766

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  57.6    1e-11


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 57.6 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 20/49 (41%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query  161  IVQYDFQAERPDELDAKAGEAIIVIAQSNPEWFVAKPIGRLGGPGLIPV  209
            +  YD+ A+ PDEL  K G+ IIV+ +S   W+  +  G  G  GLIP 
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKG--GKEGLIPS  47



Lambda      K        H        a         alpha
   0.315    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00029767

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  57.6    1e-11


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 57.6 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 20/49 (41%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query  161  IVQYDFQAERPDELDAKAGEAIIVIAQSNPEWFVAKPIGRLGGPGLIPV  209
            +  YD+ A+ PDEL  K G+ IIV+ +S   W+  +  G  G  GLIP 
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKG--GKEGLIPS  47



Lambda      K        H        a         alpha
   0.315    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00029768

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  57.6    1e-11


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 57.6 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 20/49 (41%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query  161  IVQYDFQAERPDELDAKAGEAIIVIAQSNPEWFVAKPIGRLGGPGLIPV  209
            +  YD+ A+ PDEL  K G+ IIV+ +S   W+  +  G  G  GLIP 
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKG--GKEGLIPS  47



Lambda      K        H        a         alpha
   0.315    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00034580

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  57.6    1e-11


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 57.6 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 20/49 (41%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query  161  IVQYDFQAERPDELDAKAGEAIIVIAQSNPEWFVAKPIGRLGGPGLIPV  209
            +  YD+ A+ PDEL  K G+ IIV+ +S   W+  +  G  G  GLIP 
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKG--GKEGLIPS  47



Lambda      K        H        a         alpha
   0.315    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00029769

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397872 pfam03969, AFG1_ATPase, AFG1-like ATPase. This P-loop ...  274     6e-88


>CDD:397872 pfam03969, AFG1_ATPase, AFG1-like ATPase.  This P-loop motif-containing 
family of proteins includes AFG1, LACE1 and ZapE. 
ATPase family gene 1 (AFG1) is a 377 amino acid yeast protein 
with an ATPase motif typical of the family. LACE1, the mammalian 
homolog of AFG1, is a mitochondrial integral membrane 
protein that is essential for maintenance of fused mitochondrial 
reticulum and lamellar cristae morphology. It has also 
been demonstrated that LACE1 mediates degradation of nuclear-encoded 
complex IV subunits COX4 (cytochrome c oxidase 4), 
COX5A and COX6A, and is required for normal activity of complexes 
III and IV of the respiratory chain. ZapE is a cell 
division protein found in Gram-negative bacteria. The bacterial 
cell division process relies on the assembly, positioning, 
and constriction of FtsZ ring (the so-called Z-ring), a ring-like 
network that marks the future site of the septum of 
bacterial cell division. ZapE is a Z-ring associated protein 
required for cell division under low-oxygen conditions. It 
is an ATPase that appears at the constricting Z-ring late in 
cell division. It reduces the stability of FtsZ polymers in 
the presence of ATP in vitro.
Length=361

 Score = 274 bits (702),  Expect = 6e-88, Method: Composition-based stats.
 Identities = 138/428 (32%), Positives = 194/428 (45%), Gaps = 70/428 (16%)

Query  106  PLQEYEGRVQQGRLRDDPHQREIVQKLQDLHNVLKGYTPPTVVHPSVESLDPKPKSSFFG  165
            P   Y   +Q+     D  Q   V  L  L+  L     P               +   G
Sbjct  3    PPVRYIADLQRPDFFPDVAQANAVPHLDRLYQDLAAQDFPR-------------PARAGG  49

Query  166  SLFGRQSAKAETEIPENLPKGLYMYGDVGCGKTMLMDLFYETLPANIKSKSRIHFHNFMQ  225
             L+GR+     +  P   P+GLY++G VG GKT LMDLF+E+LP   + K R HFH FM 
Sbjct  50   KLWGRK----PSVQP---PRGLYLWGGVGRGKTWLMDLFFESLP--GEKKRRTHFHRFMF  100

Query  226  DVHKRMHVVKMQYGNDFDALPLVAANIADLSSVLCFDEFQCTDVADAMILRRLLESLMSH  285
             VH  +  ++       D L ++A  +A  + +LCFDEF  +D+ DAM+L RL E+L + 
Sbjct  101  RVHDELTTLQGGV----DPLAIIADRLAGEARLLCFDEFFVSDIGDAMLLGRLFEALFAR  156

Query  286  GVVLVTTSNRHPDDLYKNGIQRKSFIPCINLLKTALTVINLNSPTDYRKMPRPPAAVYHH  345
            GV LV TSN  P+ LYKNG+QR  F+P I+LLK+   V+N++   DYR      A ++ +
Sbjct  157  GVTLVATSNIAPEQLYKNGLQRARFLPAIDLLKSHCEVVNVDGGVDYRLRTLRQAELWLY  216

Query  346  PLGPEADRHAQKWYEFLGDPNDPPHPETQEVWGRKIKVPSASGKAARFTFQELIGSATGA  405
            PL         + ++ LG     P   T EV  R ++  +  G    F+F  L  +A   
Sbjct  217  PLDGYCWAAMDRLWDALGLGEPEPLS-TLEVNARALRARAVGGDLVWFSFACLCQAARSQ  275

Query  406  ADYLELVRNYEAFIVTDVPGMTLQQRDLARRFITFIDAVYESRAKLVLTTAVPLTNLFMS  465
             DYL L   +    + DVP MT    D ARRFI  +D +Y+   KLV +  V L++L   
Sbjct  276  NDYLALAERFHTVFLEDVPQMTRCSDDAARRFIALVDELYDRDVKLVASAEVELSDL---  332

Query  466  EQEVRTSLEENGDHSDLSDAMRMMMDDLGLSVQALKSTSIFSGDEERFAFARALSRLFEM  525
                                                    + G    F F R LSRL EM
Sbjct  333  ----------------------------------------YLGGRLEFEFQRTLSRLLEM  352

Query  526  GSKDWVER  533
             S D++ R
Sbjct  353  QSHDYLAR  360



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 703875588


Query= TCONS_00034581

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397872 pfam03969, AFG1_ATPase, AFG1-like ATPase. This P-loop ...  256     2e-83


>CDD:397872 pfam03969, AFG1_ATPase, AFG1-like ATPase.  This P-loop motif-containing 
family of proteins includes AFG1, LACE1 and ZapE. 
ATPase family gene 1 (AFG1) is a 377 amino acid yeast protein 
with an ATPase motif typical of the family. LACE1, the mammalian 
homolog of AFG1, is a mitochondrial integral membrane 
protein that is essential for maintenance of fused mitochondrial 
reticulum and lamellar cristae morphology. It has also 
been demonstrated that LACE1 mediates degradation of nuclear-encoded 
complex IV subunits COX4 (cytochrome c oxidase 4), 
COX5A and COX6A, and is required for normal activity of complexes 
III and IV of the respiratory chain. ZapE is a cell 
division protein found in Gram-negative bacteria. The bacterial 
cell division process relies on the assembly, positioning, 
and constriction of FtsZ ring (the so-called Z-ring), a ring-like 
network that marks the future site of the septum of 
bacterial cell division. ZapE is a Z-ring associated protein 
required for cell division under low-oxygen conditions. It 
is an ATPase that appears at the constricting Z-ring late in 
cell division. It reduces the stability of FtsZ polymers in 
the presence of ATP in vitro.
Length=361

 Score = 256 bits (656),  Expect = 2e-83, Method: Composition-based stats.
 Identities = 119/345 (34%), Positives = 167/345 (48%), Gaps = 50/345 (14%)

Query  1    MYGDVGCGKTMLMDLFYETLPANIKSKSRIHFHNFMQDVHKRMHVVKMQYGNDFDALPLV  60
            ++G VG GKT LMDLF+E+LP   + K R HFH FM  VH  +  ++       D L ++
Sbjct  66   LWGGVGRGKTWLMDLFFESLP--GEKKRRTHFHRFMFRVHDELTTLQGGV----DPLAII  119

Query  61   AANIADLSSVLCFDEFQCTDVADAMILRRLLESLMSHGVVLVTTSNRHPDDLYKNGIQRK  120
            A  +A  + +LCFDEF  +D+ DAM+L RL E+L + GV LV TSN  P+ LYKNG+QR 
Sbjct  120  ADRLAGEARLLCFDEFFVSDIGDAMLLGRLFEALFARGVTLVATSNIAPEQLYKNGLQRA  179

Query  121  SFIPCINLLKTALTVINLNSPTDYRKMPRPPAAVYHHPLGPEADRHAQKWYEFLGDPNDP  180
             F+P I+LLK+   V+N++   DYR      A ++ +PL         + ++ LG     
Sbjct  180  RFLPAIDLLKSHCEVVNVDGGVDYRLRTLRQAELWLYPLDGYCWAAMDRLWDALGLGEPE  239

Query  181  PHPETQEVWGRKIKVPSASGKAARFTFQELIGSATGAADYLELVRNYEAFIVTDVPGMTL  240
            P   T EV  R ++  +  G    F+F  L  +A    DYL L   +    + DVP MT 
Sbjct  240  PLS-TLEVNARALRARAVGGDLVWFSFACLCQAARSQNDYLALAERFHTVFLEDVPQMTR  298

Query  241  QQRDLARRFITFIDAVYESRAKLVLTTAVPLTNLFMSEQEVRTSLEENGDHSDLSDAMRM  300
               D ARRFI  +D +Y+   KLV +  V L++L                          
Sbjct  299  CSDDAARRFIALVDELYDRDVKLVASAEVELSDL--------------------------  332

Query  301  MMDDLGLSVQALKSTSIFSGDEERFAFARALSRLFEMGSKDWVER  345
                             + G    F F R LSRL EM S D++ R
Sbjct  333  -----------------YLGGRLEFEFQRTLSRLLEMQSHDYLAR  360



Lambda      K        H        a         alpha
   0.320    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0712    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00029770

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397872 pfam03969, AFG1_ATPase, AFG1-like ATPase. This P-loop ...  170     5e-51


>CDD:397872 pfam03969, AFG1_ATPase, AFG1-like ATPase.  This P-loop motif-containing 
family of proteins includes AFG1, LACE1 and ZapE. 
ATPase family gene 1 (AFG1) is a 377 amino acid yeast protein 
with an ATPase motif typical of the family. LACE1, the mammalian 
homolog of AFG1, is a mitochondrial integral membrane 
protein that is essential for maintenance of fused mitochondrial 
reticulum and lamellar cristae morphology. It has also 
been demonstrated that LACE1 mediates degradation of nuclear-encoded 
complex IV subunits COX4 (cytochrome c oxidase 4), 
COX5A and COX6A, and is required for normal activity of complexes 
III and IV of the respiratory chain. ZapE is a cell 
division protein found in Gram-negative bacteria. The bacterial 
cell division process relies on the assembly, positioning, 
and constriction of FtsZ ring (the so-called Z-ring), a ring-like 
network that marks the future site of the septum of 
bacterial cell division. ZapE is a Z-ring associated protein 
required for cell division under low-oxygen conditions. It 
is an ATPase that appears at the constricting Z-ring late in 
cell division. It reduces the stability of FtsZ polymers in 
the presence of ATP in vitro.
Length=361

 Score = 170 bits (432),  Expect = 5e-51, Method: Composition-based stats.
 Identities = 81/257 (32%), Positives = 113/257 (44%), Gaps = 44/257 (17%)

Query  16   RLLESLMSHGVVLVTTSNRHPDDLYKNGIQRKSFIPCINLLKTALTVINLNSPTDYRKMP  75
            RL E+L + GV LV TSN  P+ LYKNG+QR  F+P I+LLK+   V+N++   DYR   
Sbjct  148  RLFEALFARGVTLVATSNIAPEQLYKNGLQRARFLPAIDLLKSHCEVVNVDGGVDYRLRT  207

Query  76   RPPAAVYHHPLGPEADRHAQKWYEFLGDPNDPPHPETQEVWGRKIKVPSASGKAARFTFQ  135
               A ++ +PL         + ++ LG     P   T EV  R ++  +  G    F+F 
Sbjct  208  LRQAELWLYPLDGYCWAAMDRLWDALGLGEPEPLS-TLEVNARALRARAVGGDLVWFSFA  266

Query  136  ELIGSATGAADYLELVRNYEAFIVTDVPGMTLQQRDLARRFITFIDAVYESRAKLVLTTA  195
             L  +A    DYL L   +    + DVP MT    D ARRFI  +D +Y+   KLV +  
Sbjct  267  CLCQAARSQNDYLALAERFHTVFLEDVPQMTRCSDDAARRFIALVDELYDRDVKLVASAE  326

Query  196  VPLTNLFMSEQEVRTSLEENGDHSDLSDAMRMMMDDLGLSVQALKSTSIFSGDEERFAFA  255
            V L++L                                           + G    F F 
Sbjct  327  VELSDL-------------------------------------------YLGGRLEFEFQ  343

Query  256  RALSRLFEMGSKDWVER  272
            R LSRL EM S D++ R
Sbjct  344  RTLSRLLEMQSHDYLAR  360



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00034582

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  57.6    1e-11


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 57.6 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 20/49 (41%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query  161  IVQYDFQAERPDELDAKAGEAIIVIAQSNPEWFVAKPIGRLGGPGLIPV  209
            +  YD+ A+ PDEL  K G+ IIV+ +S   W+  +  G  G  GLIP 
Sbjct  1    VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKG--GKEGLIPS  47



Lambda      K        H        a         alpha
   0.315    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00034583

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  57.6    1e-11


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 57.6 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 20/49 (41%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query  15  IVQYDFQAERPDELDAKAGEAIIVIAQSNPEWFVAKPIGRLGGPGLIPV  63
           +  YD+ A+ PDEL  K G+ IIV+ +S   W+  +  G  G  GLIP 
Sbjct  1   VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKG--GKEGLIPS  47



Lambda      K        H        a         alpha
   0.315    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00034584

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397872 pfam03969, AFG1_ATPase, AFG1-like ATPase. This P-loop ...  245     7e-81


>CDD:397872 pfam03969, AFG1_ATPase, AFG1-like ATPase.  This P-loop motif-containing 
family of proteins includes AFG1, LACE1 and ZapE. 
ATPase family gene 1 (AFG1) is a 377 amino acid yeast protein 
with an ATPase motif typical of the family. LACE1, the mammalian 
homolog of AFG1, is a mitochondrial integral membrane 
protein that is essential for maintenance of fused mitochondrial 
reticulum and lamellar cristae morphology. It has also 
been demonstrated that LACE1 mediates degradation of nuclear-encoded 
complex IV subunits COX4 (cytochrome c oxidase 4), 
COX5A and COX6A, and is required for normal activity of complexes 
III and IV of the respiratory chain. ZapE is a cell 
division protein found in Gram-negative bacteria. The bacterial 
cell division process relies on the assembly, positioning, 
and constriction of FtsZ ring (the so-called Z-ring), a ring-like 
network that marks the future site of the septum of 
bacterial cell division. ZapE is a Z-ring associated protein 
required for cell division under low-oxygen conditions. It 
is an ATPase that appears at the constricting Z-ring late in 
cell division. It reduces the stability of FtsZ polymers in 
the presence of ATP in vitro.
Length=361

 Score = 245 bits (628),  Expect = 7e-81, Method: Composition-based stats.
 Identities = 104/270 (39%), Positives = 147/270 (54%), Gaps = 7/270 (3%)

Query  1    MYGDVGCGKTMLMDLFYETLPANIKSKSRIHFHNFMQDVHKRMHVVKMQYGNDFDALPLV  60
            ++G VG GKT LMDLF+E+LP   + K R HFH FM  VH  +  ++       D L ++
Sbjct  66   LWGGVGRGKTWLMDLFFESLP--GEKKRRTHFHRFMFRVHDELTTLQGGV----DPLAII  119

Query  61   AANIADLSSVLCFDEFQCTDVADAMILRRLLESLMSHGVVLVTTSNRHPDDLYKNGIQRK  120
            A  +A  + +LCFDEF  +D+ DAM+L RL E+L + GV LV TSN  P+ LYKNG+QR 
Sbjct  120  ADRLAGEARLLCFDEFFVSDIGDAMLLGRLFEALFARGVTLVATSNIAPEQLYKNGLQRA  179

Query  121  SFIPCINLLKTALTVINLNSPTDYRKMPRPPAAVYHHPLGPEADRHAQKWYEFLGDPNDP  180
             F+P I+LLK+   V+N++   DYR      A ++ +PL         + ++ LG     
Sbjct  180  RFLPAIDLLKSHCEVVNVDGGVDYRLRTLRQAELWLYPLDGYCWAAMDRLWDALGLGEPE  239

Query  181  PHPETQEVWGRKIKVPSASGKAARFTFQELIGSATGAADYLELVRNYEAFIVTDVPGMTL  240
            P   T EV  R ++  +  G    F+F  L  +A    DYL L   +    + DVP MT 
Sbjct  240  PLS-TLEVNARALRARAVGGDLVWFSFACLCQAARSQNDYLALAERFHTVFLEDVPQMTR  298

Query  241  QQRDLARRFITFIDAVYESRAKLVLTTAVP  270
               D ARRFI  +D +Y+   KLV +  V 
Sbjct  299  CSDDAARRFIALVDELYDRDVKLVASAEVE  328



Lambda      K        H        a         alpha
   0.323    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00034585

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394975 pfam00018, SH3_1, SH3 domain. SH3 (Src homology 3) dom...  57.6    1e-11


>CDD:394975 pfam00018, SH3_1, SH3 domain.  SH3 (Src homology 3) domains are 
often indicative of a protein involved in signal transduction 
related to cytoskeletal organisation. First described in 
the Src cytoplasmic tyrosine kinase. The structure is a partly 
opened beta barrel.
Length=47

 Score = 57.6 bits (140),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 20/49 (41%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query  15  IVQYDFQAERPDELDAKAGEAIIVIAQSNPEWFVAKPIGRLGGPGLIPV  63
           +  YD+ A+ PDEL  K G+ IIV+ +S   W+  +  G  G  GLIP 
Sbjct  1   VALYDYTAQEPDELSFKKGDIIIVLEKSEDGWWKGRNKG--GKEGLIPS  47



Lambda      K        H        a         alpha
   0.315    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00029772

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397872 pfam03969, AFG1_ATPase, AFG1-like ATPase. This P-loop ...  272     6e-88


>CDD:397872 pfam03969, AFG1_ATPase, AFG1-like ATPase.  This P-loop motif-containing 
family of proteins includes AFG1, LACE1 and ZapE. 
ATPase family gene 1 (AFG1) is a 377 amino acid yeast protein 
with an ATPase motif typical of the family. LACE1, the mammalian 
homolog of AFG1, is a mitochondrial integral membrane 
protein that is essential for maintenance of fused mitochondrial 
reticulum and lamellar cristae morphology. It has also 
been demonstrated that LACE1 mediates degradation of nuclear-encoded 
complex IV subunits COX4 (cytochrome c oxidase 4), 
COX5A and COX6A, and is required for normal activity of complexes 
III and IV of the respiratory chain. ZapE is a cell 
division protein found in Gram-negative bacteria. The bacterial 
cell division process relies on the assembly, positioning, 
and constriction of FtsZ ring (the so-called Z-ring), a ring-like 
network that marks the future site of the septum of 
bacterial cell division. ZapE is a Z-ring associated protein 
required for cell division under low-oxygen conditions. It 
is an ATPase that appears at the constricting Z-ring late in 
cell division. It reduces the stability of FtsZ polymers in 
the presence of ATP in vitro.
Length=361

 Score = 272 bits (697),  Expect = 6e-88, Method: Composition-based stats.
 Identities = 129/378 (34%), Positives = 182/378 (48%), Gaps = 57/378 (15%)

Query  89   DPKPKSSFFGSLFGRQSAKAETEIPENLPKGLYMYGDVGCGKTMLMDLFYETLPANIKSK  148
            D    +   G L+GR+     +  P   P+GLY++G VG GKT LMDLF+E+LP   + K
Sbjct  40   DFPRPARAGGKLWGRK----PSVQP---PRGLYLWGGVGRGKTWLMDLFFESLP--GEKK  90

Query  149  SRIHFHNFMQDVHKRMHVVKMQYGNDFDALPLVAANIADLSSVLCFDEFQCTDVADAMIL  208
             R HFH FM  VH  +  ++       D L ++A  +A  + +LCFDEF  +D+ DAM+L
Sbjct  91   RRTHFHRFMFRVHDELTTLQGGV----DPLAIIADRLAGEARLLCFDEFFVSDIGDAMLL  146

Query  209  RRLLESLMSHGVVLVTTSNRHPDDLYKNGIQRKSFIPCINLLKTALTVINLNSPTDYRKM  268
             RL E+L + GV LV TSN  P+ LYKNG+QR  F+P I+LLK+   V+N++   DYR  
Sbjct  147  GRLFEALFARGVTLVATSNIAPEQLYKNGLQRARFLPAIDLLKSHCEVVNVDGGVDYRLR  206

Query  269  PRPPAAVYHHPLGPEADRHAQKWYEFLGDPNDPPHPETQEVWGRKIKVPSASGKAARFTF  328
                A ++ +PL         + ++ LG     P   T EV  R ++  +  G    F+F
Sbjct  207  TLRQAELWLYPLDGYCWAAMDRLWDALGLGEPEPLS-TLEVNARALRARAVGGDLVWFSF  265

Query  329  QELIGSATGAADYLELVRNYEAFIVTDVPGMTLQQRDLARRFITFIDAVYESRAKLVLTT  388
              L  +A    DYL L   +    + DVP MT    D ARRFI  +D +Y+   KLV + 
Sbjct  266  ACLCQAARSQNDYLALAERFHTVFLEDVPQMTRCSDDAARRFIALVDELYDRDVKLVASA  325

Query  389  AVPLTNLFMSEQEVRTSLEENGDHSDLSDAMRMMMDDLGLSVQALKSTSIFSGDEERFAF  448
             V L++L                                           + G    F F
Sbjct  326  EVELSDL-------------------------------------------YLGGRLEFEF  342

Query  449  ARALSRLFEMGSKDWVER  466
             R LSRL EM S D++ R
Sbjct  343  QRTLSRLLEMQSHDYLAR  360



Lambda      K        H        a         alpha
   0.321    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00029773

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397872 pfam03969, AFG1_ATPase, AFG1-like ATPase. This P-loop ...  242     3e-79


>CDD:397872 pfam03969, AFG1_ATPase, AFG1-like ATPase.  This P-loop motif-containing 
family of proteins includes AFG1, LACE1 and ZapE. 
ATPase family gene 1 (AFG1) is a 377 amino acid yeast protein 
with an ATPase motif typical of the family. LACE1, the mammalian 
homolog of AFG1, is a mitochondrial integral membrane 
protein that is essential for maintenance of fused mitochondrial 
reticulum and lamellar cristae morphology. It has also 
been demonstrated that LACE1 mediates degradation of nuclear-encoded 
complex IV subunits COX4 (cytochrome c oxidase 4), 
COX5A and COX6A, and is required for normal activity of complexes 
III and IV of the respiratory chain. ZapE is a cell 
division protein found in Gram-negative bacteria. The bacterial 
cell division process relies on the assembly, positioning, 
and constriction of FtsZ ring (the so-called Z-ring), a ring-like 
network that marks the future site of the septum of 
bacterial cell division. ZapE is a Z-ring associated protein 
required for cell division under low-oxygen conditions. It 
is an ATPase that appears at the constricting Z-ring late in 
cell division. It reduces the stability of FtsZ polymers in 
the presence of ATP in vitro.
Length=361

 Score = 242 bits (618),  Expect = 3e-79, Method: Composition-based stats.
 Identities = 101/261 (39%), Positives = 143/261 (55%), Gaps = 7/261 (3%)

Query  1    MYGDVGCGKTMLMDLFYETLPANIKSKSRIHFHNFMQDVHKRMHVVKMQYGNDFDALPLV  60
            ++G VG GKT LMDLF+E+LP   + K R HFH FM  VH  +  ++       D L ++
Sbjct  66   LWGGVGRGKTWLMDLFFESLP--GEKKRRTHFHRFMFRVHDELTTLQGGV----DPLAII  119

Query  61   AANIADLSSVLCFDEFQCTDVADAMILRRLLESLMSHGVVLVTTSNRHPDDLYKNGIQRK  120
            A  +A  + +LCFDEF  +D+ DAM+L RL E+L + GV LV TSN  P+ LYKNG+QR 
Sbjct  120  ADRLAGEARLLCFDEFFVSDIGDAMLLGRLFEALFARGVTLVATSNIAPEQLYKNGLQRA  179

Query  121  SFIPCINLLKTALTVINLNSPTDYRKMPRPPAAVYHHPLGPEADRHAQKWYEFLGDPNDP  180
             F+P I+LLK+   V+N++   DYR      A ++ +PL         + ++ LG     
Sbjct  180  RFLPAIDLLKSHCEVVNVDGGVDYRLRTLRQAELWLYPLDGYCWAAMDRLWDALGLGEPE  239

Query  181  PHPETQEVWGRKIKVPSASGKAARFTFQELIGSATGAADYLELVRNYEAFIVTDVPGMTL  240
            P   T EV  R ++  +  G    F+F  L  +A    DYL L   +    + DVP MT 
Sbjct  240  PLS-TLEVNARALRARAVGGDLVWFSFACLCQAARSQNDYLALAERFHTVFLEDVPQMTR  298

Query  241  QQRDLARRFITFIDAVYESRV  261
               D ARRFI  +D +Y+  V
Sbjct  299  CSDDAARRFIALVDELYDRDV  319



Lambda      K        H        a         alpha
   0.322    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00029774

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397872 pfam03969, AFG1_ATPase, AFG1-like ATPase. This P-loop ...  258     4e-83


>CDD:397872 pfam03969, AFG1_ATPase, AFG1-like ATPase.  This P-loop motif-containing 
family of proteins includes AFG1, LACE1 and ZapE. 
ATPase family gene 1 (AFG1) is a 377 amino acid yeast protein 
with an ATPase motif typical of the family. LACE1, the mammalian 
homolog of AFG1, is a mitochondrial integral membrane 
protein that is essential for maintenance of fused mitochondrial 
reticulum and lamellar cristae morphology. It has also 
been demonstrated that LACE1 mediates degradation of nuclear-encoded 
complex IV subunits COX4 (cytochrome c oxidase 4), 
COX5A and COX6A, and is required for normal activity of complexes 
III and IV of the respiratory chain. ZapE is a cell 
division protein found in Gram-negative bacteria. The bacterial 
cell division process relies on the assembly, positioning, 
and constriction of FtsZ ring (the so-called Z-ring), a ring-like 
network that marks the future site of the septum of 
bacterial cell division. ZapE is a Z-ring associated protein 
required for cell division under low-oxygen conditions. It 
is an ATPase that appears at the constricting Z-ring late in 
cell division. It reduces the stability of FtsZ polymers in 
the presence of ATP in vitro.
Length=361

 Score = 258 bits (662),  Expect = 4e-83, Method: Composition-based stats.
 Identities = 120/344 (35%), Positives = 170/344 (49%), Gaps = 27/344 (8%)

Query  106  PLQEYEGRVQQGRLRDDPHQREIVQKLQDLHNVLKGYTPPTVVHPSVESLDPKPKSSFFG  165
            P   Y   +Q+     D  Q   V  L  L+  L     P               +   G
Sbjct  3    PPVRYIADLQRPDFFPDVAQANAVPHLDRLYQDLAAQDFPR-------------PARAGG  49

Query  166  SLFGRQSAKAETEIPENLPKGLYMYGDVGCGKTMLMDLFYETLPANIKSKSRIHFHNFMQ  225
             L+GR+     +  P   P+GLY++G VG GKT LMDLF+E+LP   + K R HFH FM 
Sbjct  50   KLWGRK----PSVQP---PRGLYLWGGVGRGKTWLMDLFFESLP--GEKKRRTHFHRFMF  100

Query  226  DVHKRMHVVKMQYGNDFDALPLVAANIADLSSVLCFDEFQCTDVADAMILRRLLESLMSH  285
             VH  +  ++       D L ++A  +A  + +LCFDEF  +D+ DAM+L RL E+L + 
Sbjct  101  RVHDELTTLQGGV----DPLAIIADRLAGEARLLCFDEFFVSDIGDAMLLGRLFEALFAR  156

Query  286  GVVLVTTSNRHPDDLYKNGIQRKSFIPCINLLKTALTVINLNSPTDYRKMPRPPAAVYHH  345
            GV LV TSN  P+ LYKNG+QR  F+P I+LLK+   V+N++   DYR      A ++ +
Sbjct  157  GVTLVATSNIAPEQLYKNGLQRARFLPAIDLLKSHCEVVNVDGGVDYRLRTLRQAELWLY  216

Query  346  PLGPEADRHAQKWYEFLGDPNDPPHPETQEVWGRKIKVPSASGKAARFTFQELIGSATGA  405
            PL         + ++ LG     P   T EV  R ++  +  G    F+F  L  +A   
Sbjct  217  PLDGYCWAAMDRLWDALGLGEPEPLS-TLEVNARALRARAVGGDLVWFSFACLCQAARSQ  275

Query  406  ADYLELVRNYEAFIVTDVPGMTLQQRDLARRFITFIDAVYESRV  449
             DYL L   +    + DVP MT    D ARRFI  +D +Y+  V
Sbjct  276  NDYLALAERFHTVFLEDVPQMTRCSDDAARRFIALVDELYDRDV  319



Lambda      K        H        a         alpha
   0.319    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00029776

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00034589

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00034588

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426316 pfam01545, Cation_efflux, Cation efflux family. Member...  69.2    2e-15


>CDD:426316 pfam01545, Cation_efflux, Cation efflux family.  Members of this 
family are integral membrane proteins, that are found to 
increase tolerance to divalent metal ions such as cadmium, 
zinc, and cobalt. These proteins are thought to be efflux pumps 
that remove these ions from cells.
Length=189

 Score = 69.2 bits (170),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 48/149 (32%), Positives = 70/149 (47%), Gaps = 18/149 (12%)

Query  21   FFLTEISFGLYTHSLALVADAFHYLTDLIGLVVALLALKLSEIDDPPKILAFGWQRAPVL  80
              L +++ GL T SLAL+ADA H L DLI  ++ALLAL+LS    P +   FG  R   L
Sbjct  2    LALVKLAAGLLTGSLALLADAVHSLIDLISSLLALLALRLS-RKPPDERFPFGHGRLEPL  60

Query  81   GAFFNGALLFALGISILLHSVERFISLHSSCLPSTCRRLTDILQRSRIPDSCSLLDALAW  140
             A   G LL   G+ +L  S++R +S                     I    +L+ AL  
Sbjct  61   AALVVGILLLGGGVFLLYESIQRLLSPGEE-----------------IDPGLALILALVS  103

Query  141  VLISSALLFFMAGLSFWMCSPVANVKALE  169
            +L++  LL ++   +  + SP     AL 
Sbjct  104  LLVNLFLLLYLRRAARRIRSPALKADALH  132



Lambda      K        H        a         alpha
   0.328    0.138    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00029780

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00034590

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF42...  689     0.0  


>CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF4246).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and fungi. Proteins 
in this family are typically between 392 and 644 amino acids 
in length.
Length=421

 Score = 689 bits (1781),  Expect = 0.0, Method: Composition-based stats.
 Identities = 255/480 (53%), Positives = 321/480 (67%), Gaps = 62/480 (13%)

Query  63   TTHREILMMRALNSITDKLDWEKKVFDEEITAKWRKEIIGSGEDITPNMMDWIIKEAQWK  122
             T RE+ M+R +N+ITDK DW +KVFDEEI AKWRKE +    DIT  M DW I E + K
Sbjct  1    LTVRELAMLRFMNAITDKPDWHRKVFDEEIVAKWRKEALADPWDITEKMWDWCIAELRDK  60

Query  123  AKVFQDTKHVVAFD--AGVVKSDIAIGEDLRQVLKDAVRPLEDVPEGLKNYHPGSDDKVV  180
            AK+F++T  V   D  +GVVKSD  + E+LR+ LK AV PLEDVPEG K++HPGSD++V+
Sbjct  61   AKIFEETGLVPVLDSSSGVVKSDTLVPEELREELKAAVAPLEDVPEGQKDWHPGSDEQVL  120

Query  181  DLVHPSLFPVVYGRTRILHRKLIGLEDFLNYVGEGKILAIPPEEEATATIDRDWGGVRRP  240
            DLVHPSLFP+VYGRTR+L   ++GLED L   G+G+++ +P E E    I        RP
Sbjct  121  DLVHPSLFPLVYGRTRVLPDGVVGLEDALESAGQGEVIPVPSETE----IKSRADIPPRP  176

Query  241  YSRKFQWLPCDVHFTDNGECRIASYINNLHPNKHRQLYQVIEKILEQTIPLWNTTLTLVR  300
            +S KFQWLPCDV F+++G  RI SYINNLHP KH++LY VIEK++ + IPLWN TLT   
Sbjct  177  WSDKFQWLPCDVEFSEDGGVRITSYINNLHPVKHKELYPVIEKLISKAIPLWNETLT---  233

Query  301  DKYKRIPYNEVQYDEHPEPEPQPENEEDEHSDEYYQRYDEWQKREPIRRPEPGEFAPHVT  360
                                                             PEPG       
Sbjct  234  --------------------------------------------PKFVLPEPGTAFHE--  247

Query  361  EAKKQVNLHKDFAERGLQVIIKLANIELTPEKPEYEGGSWHVEGQLNEHICASAIYYYDS  420
                 V+L +DF +RGLQVI+KLANIELTPEKPEY GGSWHVEGQLNEHI A+A+YYYDS
Sbjct  248  --PYPVDLREDFRDRGLQVIVKLANIELTPEKPEYPGGSWHVEGQLNEHIVATALYYYDS  305

Query  421  QNITDSRLAFRQRADTEEVSY-ISYDQSRHEFLHEIFGLDNEAGWNEGNVTQFLGGVDTR  479
            +NIT+SRL+FRQ+ D E++   + Y+Q  H++L  +FG++N     EG+  Q LG V+T+
Sbjct  306  ENITESRLSFRQQTDAEDLFEELEYEQDDHDWLERVFGIENG----EGSAVQELGSVETK  361

Query  480  QGRLLTFPNSLQHQVSPFALADRSKPGHRKILAFFLVDPHLSIISSANVPPQQEDWWKER  539
            +GRLL FPN+LQH+VSPF LAD++KPGHRKILA FLVDPH+ IIS+ANVPPQQ DWW E 
Sbjct  362  EGRLLAFPNTLQHRVSPFELADKTKPGHRKILALFLVDPHIRIISTANVPPQQRDWWAEE  421



Lambda      K        H        a         alpha
   0.317    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 754686140


Query= TCONS_00029778

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00029777

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426316 pfam01545, Cation_efflux, Cation efflux family. Member...  69.2    2e-15


>CDD:426316 pfam01545, Cation_efflux, Cation efflux family.  Members of this 
family are integral membrane proteins, that are found to 
increase tolerance to divalent metal ions such as cadmium, 
zinc, and cobalt. These proteins are thought to be efflux pumps 
that remove these ions from cells.
Length=189

 Score = 69.2 bits (170),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 48/149 (32%), Positives = 70/149 (47%), Gaps = 18/149 (12%)

Query  21   FFLTEISFGLYTHSLALVADAFHYLTDLIGLVVALLALKLSEIDDPPKILAFGWQRAPVL  80
              L +++ GL T SLAL+ADA H L DLI  ++ALLAL+LS    P +   FG  R   L
Sbjct  2    LALVKLAAGLLTGSLALLADAVHSLIDLISSLLALLALRLS-RKPPDERFPFGHGRLEPL  60

Query  81   GAFFNGALLFALGISILLHSVERFISLHSSCLPSTCRRLTDILQRSRIPDSCSLLDALAW  140
             A   G LL   G+ +L  S++R +S                     I    +L+ AL  
Sbjct  61   AALVVGILLLGGGVFLLYESIQRLLSPGEE-----------------IDPGLALILALVS  103

Query  141  VLISSALLFFMAGLSFWMCSPVANVKALE  169
            +L++  LL ++   +  + SP     AL 
Sbjct  104  LLVNLFLLLYLRRAARRIRSPALKADALH  132



Lambda      K        H        a         alpha
   0.328    0.138    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00034591

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426316 pfam01545, Cation_efflux, Cation efflux family. Member...  69.2    2e-15


>CDD:426316 pfam01545, Cation_efflux, Cation efflux family.  Members of this 
family are integral membrane proteins, that are found to 
increase tolerance to divalent metal ions such as cadmium, 
zinc, and cobalt. These proteins are thought to be efflux pumps 
that remove these ions from cells.
Length=189

 Score = 69.2 bits (170),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 48/149 (32%), Positives = 70/149 (47%), Gaps = 18/149 (12%)

Query  21   FFLTEISFGLYTHSLALVADAFHYLTDLIGLVVALLALKLSEIDDPPKILAFGWQRAPVL  80
              L +++ GL T SLAL+ADA H L DLI  ++ALLAL+LS    P +   FG  R   L
Sbjct  2    LALVKLAAGLLTGSLALLADAVHSLIDLISSLLALLALRLS-RKPPDERFPFGHGRLEPL  60

Query  81   GAFFNGALLFALGISILLHSVERFISLHSSCLPSTCRRLTDILQRSRIPDSCSLLDALAW  140
             A   G LL   G+ +L  S++R +S                     I    +L+ AL  
Sbjct  61   AALVVGILLLGGGVFLLYESIQRLLSPGEE-----------------IDPGLALILALVS  103

Query  141  VLISSALLFFMAGLSFWMCSPVANVKALE  169
            +L++  LL ++   +  + SP     AL 
Sbjct  104  LLVNLFLLLYLRRAARRIRSPALKADALH  132



Lambda      K        H        a         alpha
   0.328    0.138    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00029779

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF42...  449     2e-157


>CDD:433661 pfam14033, DUF4246, Protein of unknown function (DUF4246).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and fungi. Proteins 
in this family are typically between 392 and 644 amino acids 
in length.
Length=421

 Score = 449 bits (1157),  Expect = 2e-157, Method: Composition-based stats.
 Identities = 173/346 (50%), Positives = 214/346 (62%), Gaps = 57/346 (16%)

Query  63   TTHREILMMRALNSITDKLDWEKKVFDEEITAKWRKEIIGSGEDITPNMMDWIIKEAQWK  122
             T RE+ M+R +N+ITDK DW +KVFDEEI AKWRKE +    DIT  M DW I E + K
Sbjct  1    LTVRELAMLRFMNAITDKPDWHRKVFDEEIVAKWRKEALADPWDITEKMWDWCIAELRDK  60

Query  123  AKVFQDTKHVVAFD--AGVVKSDIAIGEDLRQVLKDAVRPLEDVPEGLKNYHPGSDDKVV  180
            AK+F++T  V   D  +GVVKSD  + E+LR+ LK AV PLEDVPEG K++HPGSD++V+
Sbjct  61   AKIFEETGLVPVLDSSSGVVKSDTLVPEELREELKAAVAPLEDVPEGQKDWHPGSDEQVL  120

Query  181  DLVHPSLFPVVYGRTRILHRKLIGLEDFLNYVGEGKILAIPPEEEATATIDRDWGGVRRP  240
            DLVHPSLFP+VYGRTR+L   ++GLED L   G+G+++ +P E E    I        RP
Sbjct  121  DLVHPSLFPLVYGRTRVLPDGVVGLEDALESAGQGEVIPVPSETE----IKSRADIPPRP  176

Query  241  YSRKFQWLPCDVHFTDNGECRIASYINNLHPNKHRQLYQVIEKILEQTIPLWNTTLTLVR  300
            +S KFQWLPCDV F+++G  RI SYINNLHP KH++LY VIEK++ + IPLWN TLT   
Sbjct  177  WSDKFQWLPCDVEFSEDGGVRITSYINNLHPVKHKELYPVIEKLISKAIPLWNETLT---  233

Query  301  DKYKRIPYNEVQYDEHPEPEPQPENEEDEHSDEYYQRYDEWQKREPIRRPEPGEFAPHVT  360
                                                             PEPG       
Sbjct  234  --------------------------------------------PKFVLPEPGTAFHE--  247

Query  361  EAKKQVNLHKDFAERGLQVIIKLANIELTPEKPEYEGGSWHVEGQL  406
                 V+L +DF +RGLQVI+KLANIELTPEKPEY GGSWHVEGQL
Sbjct  248  --PYPVDLREDFRDRGLQVIVKLANIELTPEKPEYPGGSWHVEGQL  291



Lambda      K        H        a         alpha
   0.318    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00029782

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00034592

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00029783

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426316 pfam01545, Cation_efflux, Cation efflux family. Member...  103     6e-27


>CDD:426316 pfam01545, Cation_efflux, Cation efflux family.  Members of this 
family are integral membrane proteins, that are found to 
increase tolerance to divalent metal ions such as cadmium, 
zinc, and cobalt. These proteins are thought to be efflux pumps 
that remove these ions from cells.
Length=189

 Score = 103 bits (258),  Expect = 6e-27, Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 111/237 (47%), Gaps = 53/237 (22%)

Query  9    FFLTEISFGLYTHSLALVADAFHYLTDLIGLVVALLALKLSEIDDPPKILAFGWQRAPVL  68
              L +++ GL T SLAL+ADA H L DLI  ++ALLAL+LS    P +   FG  R   L
Sbjct  2    LALVKLAAGLLTGSLALLADAVHSLIDLISSLLALLALRLS-RKPPDERFPFGHGRLEPL  60

Query  69   GAFFNGALLFALGISILLHSVERFIS----LHNSCSLLDALAWVLISSALLFFMAGLSFW  124
             A   G LL   G+ +L  S++R +S    +    +L+ AL  +L++  LL ++   +  
Sbjct  61   AALVVGILLLGGGVFLLYESIQRLLSPGEEIDPGLALILALVSLLVNLFLLLYLRRAARR  120

Query  125  MCSPVANVKALEKSSHTHRHALDTSTDSSIGAHDEGSIRLPPERTGSSCRDVGMLGVLLH  184
            + SP                                                 +    LH
Sbjct  121  IRSPA------------------------------------------------LKADALH  132

Query  185  VIGDAVNNLGVMIAALVIWFTEYEGRYYADPGASLWIGVIIILSSLPLLRKAGSILL  241
             + D + +LGV+I+AL+I+     G   ADP ASL IG++I+ ++L LL+++ SILL
Sbjct  133  ALSDVLASLGVLISALLIYLGPITGGLLADPLASLLIGLLILYTALRLLKESLSILL  189



Lambda      K        H        a         alpha
   0.324    0.139    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00034593

Length=121
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                96.6    3e-25


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 96.6 bits (241),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 56/108 (52%), Gaps = 8/108 (7%)

Query  6    AALGVGTDIGGSIRAPAGFCGAYGFRPTALRMPATGIKVPGPGQESIHGTAGPLASQSVE  65
              L +GTD GGSIR PA FCG  G +PT  R+   G+     G  S     GPLA +SVE
Sbjct  144  VPLAIGTDTGGSIRIPASFCGLVGLKPTYGRVSRYGV----VGYASSLDQVGPLA-RSVE  198

Query  66   DLNLFQRAVIDQEPWETETSLVPLP---WRQVKATKNMTVGIMWDDGY  110
            D  L  R +   +P ++ +   P+P       K+ K + +G+  +DGY
Sbjct  199  DAALLLRVISGYDPKDSTSLPPPVPDYAEPVKKSLKGLRIGVYREDGY  246



Lambda      K        H        a         alpha
   0.318    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00029784

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                112     1e-30


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 112 bits (283),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 58/154 (38%), Positives = 80/154 (52%), Gaps = 24/154 (16%)

Query  1    MHLCCDNNLTGPTRNPYNRTLTPGGSSGGEGASMGFKCAA--------LGVGTDIGGSIR  52
            M    +N++ GPTRNP++ + TPGGSSGG         AA        L +GTD GGSIR
Sbjct  106  MGSSTENSVFGPTRNPWDLSRTPGGSSGG--------SAAAVAAGLVPLAIGTDTGGSIR  157

Query  53   APAGFCGAYGFRPTALRMPATGIKVPGPGQESIHGTAGPLASQSVEDLNLFQRAVIDQEP  112
             PA FCG  G +PT  R+   G+     G  S     GPLA +SVED  L  R +   +P
Sbjct  158  IPASFCGLVGLKPTYGRVSRYGV----VGYASSLDQVGPLA-RSVEDAALLLRVISGYDP  212

Query  113  WETETSLVPLP---WRQVKATKNMTVGIMWDDGY  143
             ++ +   P+P       K+ K + +G+  +DGY
Sbjct  213  KDSTSLPPPVPDYAEPVKKSLKGLRIGVYREDGY  246



Lambda      K        H        a         alpha
   0.317    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00029785

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                217     5e-68


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 217 bits (556),  Expect = 5e-68, Method: Composition-based stats.
 Identities = 96/260 (37%), Positives = 137/260 (53%), Gaps = 25/260 (10%)

Query  78   EVVVAFLKRAVLGHQLLNFATEFMAERAISRAKKLDEYFKRTGKLVGPLHGVPISVKEHI  137
            E+V AFL R    +  LN       + A+++A   D+     G   GPLHGVPI+VK++I
Sbjct  1    ELVEAFLDRIEAANPKLNAFVTVFFDEALAQAAAADKQRAA-GDPKGPLHGVPIAVKDNI  59

Query  138  EIKGRTCNAGFVAWVDDIANEDALLVQYLERAGAIFHVRTNQPQSLMHLCCDNNLTGPTR  197
            ++KG    AG  A  +  A  DA +V+ L +AGA+   +TN  +  M    +N++ GPTR
Sbjct  60   DVKGVPTTAGSKALENYPAPYDATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTR  119

Query  198  NPYNRTLTPGGSSGGEGASMGFKCAA--------LGVGTDIGGSIRAPAGFCGAYGFRPT  249
            NP++ + TPGGSSGG         AA        L +GTD GGSIR PA FCG  G +PT
Sbjct  120  NPWDLSRTPGGSSGG--------SAAAVAAGLVPLAIGTDTGGSIRIPASFCGLVGLKPT  171

Query  250  ALRMPATGIKVPGPGQESIHGTAGPLASQSVEDLNLFQRAVIDQEPWETETSLVPLP---  306
              R+   G+     G  S     GPLA +SVED  L  R +   +P ++ +   P+P   
Sbjct  172  YGRVSRYGV----VGYASSLDQVGPLA-RSVEDAALLLRVISGYDPKDSTSLPPPVPDYA  226

Query  307  WRQVKATKNMTVGIMWDDGY  326
                K+ K + +G+  +DGY
Sbjct  227  EPVKKSLKGLRIGVYREDGY  246



Lambda      K        H        a         alpha
   0.318    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00029786

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                259     4e-83


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 259 bits (663),  Expect = 4e-83, Method: Composition-based stats.
 Identities = 107/301 (36%), Positives = 160/301 (53%), Gaps = 9/301 (3%)

Query  78   EVVVAFLKRAVLGHQLLNFATEFMAERAISRAKKLDEYFKRTGKLVGPLHGVPISVKEHI  137
            E+V AFL R    +  LN       + A+++A   D+     G   GPLHGVPI+VK++I
Sbjct  1    ELVEAFLDRIEAANPKLNAFVTVFFDEALAQAAAADKQRAA-GDPKGPLHGVPIAVKDNI  59

Query  138  EIKGRTCNAGFVAWVDDIANEDALLVQYLERAGAIFHVRTNQPQSLMHLCCDNNLTGPTR  197
            ++KG    AG  A  +  A  DA +V+ L +AGA+   +TN  +  M    +N++ GPTR
Sbjct  60   DVKGVPTTAGSKALENYPAPYDATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTR  119

Query  198  NPYNRTLTPGGSSGGEGASMGFKCAALGVGTDIGGSIRAPAGFCGAYGFRPTALRMPATG  257
            NP++ + TPGGSSGG  A++      L +GTD GGSIR PA FCG  G +PT  R+   G
Sbjct  120  NPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPASFCGLVGLKPTYGRVSRYG  179

Query  258  IKVPGPGQESIHGTAGPLASQSVEDLNLFQRAVIDQEPWETETSLVPLP---WRQVKATK  314
            +     G  S     GPLA +SVED  L  R +   +P ++ +   P+P       K+ K
Sbjct  180  V----VGYASSLDQVGPLA-RSVEDAALLLRVISGYDPKDSTSLPPPVPDYAEPVKKSLK  234

Query  315  NMTVGIMWDDGCVRPHPPVTRALRHAKEKLLAAGLKVVDWEPYRHDHGWEIISSLYFPDA  374
             + +G+  +DG     P V RA+  A  +L A G +VV+ +P   D+   +   +   +A
Sbjct  235  GLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVVEVDPPSLDYALPLYYLIAPAEA  294

Query  375  A  375
            +
Sbjct  295  S  295



Lambda      K        H        a         alpha
   0.319    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00029787

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                112     1e-30


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 112 bits (283),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 58/154 (38%), Positives = 80/154 (52%), Gaps = 24/154 (16%)

Query  1    MHLCCDNNLTGPTRNPYNRTLTPGGSSGGEGASMGFKCAA--------LGVGTDIGGSIR  52
            M    +N++ GPTRNP++ + TPGGSSGG         AA        L +GTD GGSIR
Sbjct  106  MGSSTENSVFGPTRNPWDLSRTPGGSSGG--------SAAAVAAGLVPLAIGTDTGGSIR  157

Query  53   APAGFCGAYGFRPTALRMPATGIKVPGPGQESIHGTAGPLASQSVEDLNLFQRAVIDQEP  112
             PA FCG  G +PT  R+   G+     G  S     GPLA +SVED  L  R +   +P
Sbjct  158  IPASFCGLVGLKPTYGRVSRYGV----VGYASSLDQVGPLA-RSVEDAALLLRVISGYDP  212

Query  113  WETETSLVPLP---WRQVKATKNMTVGIMWDDGY  143
             ++ +   P+P       K+ K + +G+  +DGY
Sbjct  213  KDSTSLPPPVPDYAEPVKKSLKGLRIGVYREDGY  246



Lambda      K        H        a         alpha
   0.317    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00029788

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00029789

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                154     4e-45


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 154 bits (392),  Expect = 4e-45, Method: Composition-based stats.
 Identities = 70/203 (34%), Positives = 102/203 (50%), Gaps = 24/203 (12%)

Query  1    MHLCCDNNLTGPTRNPYNRTLTPGGSSGGEGASMGFKCAA--------LGVGTDIGGSIR  52
            M    +N++ GPTRNP++ + TPGGSSGG         AA        L +GTD GGSIR
Sbjct  106  MGSSTENSVFGPTRNPWDLSRTPGGSSGG--------SAAAVAAGLVPLAIGTDTGGSIR  157

Query  53   APAGFCGAYGFRPTALRMPATGIKVPGPGQESIHGTAGPLASQSVEDLNLFQRAVIDQEP  112
             PA FCG  G +PT  R+   G+     G  S     GPLA +SVED  L  R +   +P
Sbjct  158  IPASFCGLVGLKPTYGRVSRYGV----VGYASSLDQVGPLA-RSVEDAALLLRVISGYDP  212

Query  113  WETETSLVPLP---WRQVKATKNMTVGIMWDDGCVRPHPPVTRALRHAKEKLLAAGLKVV  169
             ++ +   P+P       K+ K + +G+  +DG     P V RA+  A  +L A G +VV
Sbjct  213  KDSTSLPPPVPDYAEPVKKSLKGLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVV  272

Query  170  DWEPYRHDHGWEIISSLYFPDAA  192
            + +P   D+   +   +   +A+
Sbjct  273  EVDPPSLDYALPLYYLIAPAEAS  295



Lambda      K        H        a         alpha
   0.318    0.135    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00029790

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                96.6    8e-24


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 96.6 bits (241),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 41/220 (19%), Positives = 70/220 (32%), Gaps = 44/220 (20%)

Query  5    VRPHPPVTRALRHAKEKLLAAGLKVVDWEPYRHDHGWEIISSLYFPDAA-----------  53
                P V RA+  A  +L A G +VV+ +P   D+   +   +   +A+           
Sbjct  247  FDLDPEVRRAVEEALAQLEALGHEVVEVDPPSLDYALPLYYLIAPAEASSNLARYDGVPS  306

Query  54   ---NSQRTVLSQSGEPLLPLT-----EWAFAYSRASPLSIPENWALNCK-RDAYRDTYHA  104
               +          E L            +A S A         A   K R   R  +  
Sbjct  307  GPDDLSELYPRTRAEGLGDEVKRRIILGNYALS-AGYYDKYYLKA--QKVRRLIRREFAG  363

Query  105  LMKSRDVDFILCPVYVGAAAVMGESQYWNYTAIWNILDYPGVVFPSGLIVDPELDPVDGG  164
            L    ++D +L P      A        +   ++N+ D+   V P  L        +  G
Sbjct  364  LF--EELDVLLSPT-APTPAPRLGEPDDSPLVMYNLDDFTAGVVPVNL-AGLPAISLPAG  419

Query  165  YRPRSEVDAREWAKYRPERYEGAPIGLQLVGKRFKDEETL  204
            +                   +G P+G+Q++GK   +E  L
Sbjct  420  FTA-----------------DGLPVGVQIIGKPGDEETLL  442



Lambda      K        H        a         alpha
   0.319    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00034595

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459820 pfam00459, Inositol_P, Inositol monophosphatase family     100     3e-25


>CDD:459820 pfam00459, Inositol_P, Inositol monophosphatase family.  
Length=271

 Score = 100 bits (252),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 81/342 (24%), Positives = 125/342 (37%), Gaps = 86/342 (25%)

Query  17   TVQRAALLTKKLLEAVDKGSFDKSDST---PVTIADFAAQALIIGAIHKAFPEDEFVGEE  73
             +   A    +   +      +K  S     VT AD AA+ LI+ A+   FP  + +GEE
Sbjct  11   ELAAKAGEILREAFSNKLTIEEKGKSGANDLVTAADKAAEELILEALAALFPSHKIIGEE  70

Query  74   DSKALRADPELLERTWELASTTHLDDKDSEALLYAPKSKEEMLDLIDLGARGRCSLENRA  133
                                 T L D                                  
Sbjct  71   GGAK--------------GDQTELTDDG------------------------------PT  86

Query  134  WVLDPVDGTATFMQG-QQYAVCLALVENGCQKVGVLGCPNLNLATGRLREDVVDRDGYGS  192
            W++DP+DGT  F+ G  Q+AV + L  NG   +GV+  P      G+L            
Sbjct  87   WIIDPIDGTKNFVHGIPQFAVSIGLAVNGEPVLGVIYQP----FAGQL------------  130

Query  193  QVFAVAGQGAWIRKMGRGGLLAAESIPQRPQITDPKDLDFVDCGSATSSNTSLHARVASK  252
               A  G+GA++           + +P        + L     G ++  +TS  + +A  
Sbjct  131  -YSAAKGKGAFLN---------GQPLPVSRAPPLSEALLVTLFGVSSRKDTSEASFLAKL  180

Query  253  LGA-PWPYSTDLWAAQLRYIAIAVGGCNALIKIPHKALYRSKIWDHAGGMLIAEEVGVKV  311
            L     P    + +A L+   +A G  +A I+       R K WDHA G+ I  E G  V
Sbjct  181  LKLVRAPGVRRVGSAALKLAMVAAGKADAYIEFG-----RLKPWDHAAGVAILREAGGVV  235

Query  312  TDLAGNPVDCSLGRTLAGCYGMIVAPPSIHERIVEAVKEVMQ  353
            TD  G P D   GR +A        P  +HE +  A++E+++
Sbjct  236  TDADGGPFDLLAGRVIAA------NPKVLHELLAAALEEIIE  271



Lambda      K        H        a         alpha
   0.318    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00034596

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459820 pfam00459, Inositol_P, Inositol monophosphatase family     100     3e-25


>CDD:459820 pfam00459, Inositol_P, Inositol monophosphatase family.  
Length=271

 Score = 100 bits (252),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 81/342 (24%), Positives = 125/342 (37%), Gaps = 86/342 (25%)

Query  17   TVQRAALLTKKLLEAVDKGSFDKSDST---PVTIADFAAQALIIGAIHKAFPEDEFVGEE  73
             +   A    +   +      +K  S     VT AD AA+ LI+ A+   FP  + +GEE
Sbjct  11   ELAAKAGEILREAFSNKLTIEEKGKSGANDLVTAADKAAEELILEALAALFPSHKIIGEE  70

Query  74   DSKALRADPELLERTWELASTTHLDDKDSEALLYAPKSKEEMLDLIDLGARGRCSLENRA  133
                                 T L D                                  
Sbjct  71   GGAK--------------GDQTELTDDG------------------------------PT  86

Query  134  WVLDPVDGTATFMQG-QQYAVCLALVENGCQKVGVLGCPNLNLATGRLREDVVDRDGYGS  192
            W++DP+DGT  F+ G  Q+AV + L  NG   +GV+  P      G+L            
Sbjct  87   WIIDPIDGTKNFVHGIPQFAVSIGLAVNGEPVLGVIYQP----FAGQL------------  130

Query  193  QVFAVAGQGAWIRKMGRGGLLAAESIPQRPQITDPKDLDFVDCGSATSSNTSLHARVASK  252
               A  G+GA++           + +P        + L     G ++  +TS  + +A  
Sbjct  131  -YSAAKGKGAFLN---------GQPLPVSRAPPLSEALLVTLFGVSSRKDTSEASFLAKL  180

Query  253  LGA-PWPYSTDLWAAQLRYIAIAVGGCNALIKIPHKALYRSKIWDHAGGMLIAEEVGVKV  311
            L     P    + +A L+   +A G  +A I+       R K WDHA G+ I  E G  V
Sbjct  181  LKLVRAPGVRRVGSAALKLAMVAAGKADAYIEFG-----RLKPWDHAAGVAILREAGGVV  235

Query  312  TDLAGNPVDCSLGRTLAGCYGMIVAPPSIHERIVEAVKEVMQ  353
            TD  G P D   GR +A        P  +HE +  A++E+++
Sbjct  236  TDADGGPFDLLAGRVIAA------NPKVLHELLAAALEEIIE  271



Lambda      K        H        a         alpha
   0.318    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00034597

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459820 pfam00459, Inositol_P, Inositol monophosphatase family     100     3e-25


>CDD:459820 pfam00459, Inositol_P, Inositol monophosphatase family.  
Length=271

 Score = 100 bits (252),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 81/342 (24%), Positives = 125/342 (37%), Gaps = 86/342 (25%)

Query  17   TVQRAALLTKKLLEAVDKGSFDKSDST---PVTIADFAAQALIIGAIHKAFPEDEFVGEE  73
             +   A    +   +      +K  S     VT AD AA+ LI+ A+   FP  + +GEE
Sbjct  11   ELAAKAGEILREAFSNKLTIEEKGKSGANDLVTAADKAAEELILEALAALFPSHKIIGEE  70

Query  74   DSKALRADPELLERTWELASTTHLDDKDSEALLYAPKSKEEMLDLIDLGARGRCSLENRA  133
                                 T L D                                  
Sbjct  71   GGAK--------------GDQTELTDDG------------------------------PT  86

Query  134  WVLDPVDGTATFMQG-QQYAVCLALVENGCQKVGVLGCPNLNLATGRLREDVVDRDGYGS  192
            W++DP+DGT  F+ G  Q+AV + L  NG   +GV+  P      G+L            
Sbjct  87   WIIDPIDGTKNFVHGIPQFAVSIGLAVNGEPVLGVIYQP----FAGQL------------  130

Query  193  QVFAVAGQGAWIRKMGRGGLLAAESIPQRPQITDPKDLDFVDCGSATSSNTSLHARVASK  252
               A  G+GA++           + +P        + L     G ++  +TS  + +A  
Sbjct  131  -YSAAKGKGAFLN---------GQPLPVSRAPPLSEALLVTLFGVSSRKDTSEASFLAKL  180

Query  253  LGA-PWPYSTDLWAAQLRYIAIAVGGCNALIKIPHKALYRSKIWDHAGGMLIAEEVGVKV  311
            L     P    + +A L+   +A G  +A I+       R K WDHA G+ I  E G  V
Sbjct  181  LKLVRAPGVRRVGSAALKLAMVAAGKADAYIEFG-----RLKPWDHAAGVAILREAGGVV  235

Query  312  TDLAGNPVDCSLGRTLAGCYGMIVAPPSIHERIVEAVKEVMQ  353
            TD  G P D   GR +A        P  +HE +  A++E+++
Sbjct  236  TDADGGPFDLLAGRVIAA------NPKVLHELLAAALEEIIE  271



Lambda      K        H        a         alpha
   0.318    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00029791

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00034598

Length=417


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00034599

Length=417


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00029793

Length=309


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0768    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00029794

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00029795

Length=417


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00034601

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00029797

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00034602

Length=362


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00034603

Length=358


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00034604

Length=417


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00034605

Length=417


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00029799

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00029800

Length=417


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00029801

Length=417


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00029803

Length=448


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00034608

Length=451
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase. This ...  557     0.0  


>CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase.  This is a family 
of queuine tRNA-ribosyltransferases EC:2.4.2.29, also 
known as tRNA-guanine transglycosylase and guanine insertion 
enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for 
asparagine, aspartic acid, histidine and tyrosine with queuine. 
It catalyzes the exchange of guanine-34 at the wobble position 
with 7-aminomethyl-7-deazaguanine, and the addition of 
a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 
tRNA; giving a hypermodified base queuine in the wobble position. 
The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, 
and important tRNA and 7-aminomethyl-7deazaguanine 
binding residues.
Length=358

 Score = 557 bits (1439),  Expect = 0.0, Method: Composition-based stats.
 Identities = 193/381 (51%), Positives = 242/381 (64%), Gaps = 27/381 (7%)

Query  69   KARASTLHLPHGSVPLPIFMPVATQASLKGLTYDQLKQTGCMLCLNNTYHLGLKPGQEVL  128
             AR   L  PHG +  P FMPV TQ ++KGLT D+LK+ G  + L NTYHL L+PG E++
Sbjct  3    AARLGRLTTPHGVIETPAFMPVGTQGTVKGLTPDELKELGAQIILGNTYHLYLRPGLELV  62

Query  129  DQVGGAHKLQGWDRNILTDSGGFQMVSLLKLAKVTEEGVRFLSPHDGTPMLLTPEHSISL  188
             + GG HK  GWD  ILTDSGGFQ+ SL KL K+TEEGV F S  DG+   LTPE S+ +
Sbjct  63   AKAGGLHKFMGWDGPILTDSGGFQVFSLAKLRKITEEGVTFRSHIDGSKHFLTPEESMEI  122

Query  189  QNSIGSDIIMQLDDVIATTSPDHARIHEAMERSVRWLDRCIDAHKYPERQNLFCIIQGGL  248
            Q ++GSDI M LD+     +    R  +++ER++RW +RC++AHK PE Q LF I+QGGL
Sbjct  123  QEALGSDIAMALDECTPYPA-SRKRAEKSVERTLRWAERCLEAHKRPEDQALFGIVQGGL  181

Query  249  DLELRKQCCAEMVARDTPGIAIGGLSGGEAKEEFCKVVDTCTGLLPEHKPRYVMGVVSTR  308
              +LR++   E+   D  G AIGGLS GE KEE  ++V+  T LLPE KPRY+MGV    
Sbjct  182  YPDLREESAEELAELDFDGYAIGGLSVGEPKEEMYEIVEATTPLLPEDKPRYLMGV----  237

Query  309  WPIRLAVSFIDAAQGYPEDLVVAVALGADMFDCVWPTRTARFGNAVVPSGNLNLRHKSFA  368
                          G PED++ AVALG DMFDCV+PTR AR G A+   G LNLR+  +A
Sbjct  238  --------------GTPEDILEAVALGVDMFDCVYPTRNARNGRALTSEGTLNLRNAKYA  283

Query  369  EDFRPIQEGCSCSCCRPRDQGGLGITRAYLHHL-AAKETVGAHLLTIHNVHYLLNLMGSA  427
            EDFRP+ EGCSC  CR         +RAYL HL  AKE +GA LLTIHN+H+ L LM   
Sbjct  284  EDFRPLDEGCSCYTCR-------NYSRAYLRHLLKAKEMLGARLLTIHNLHFYLELMREI  336

Query  428  RQAILEDRYPAFLREFFDNLY  448
            RQAI E R+  F+ EF     
Sbjct  337  RQAIKEGRFEEFVEEFLRKYP  357



Lambda      K        H        a         alpha
   0.322    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 553667144


Query= TCONS_00034609

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase. This ...  304     4e-105


>CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase.  This is a family 
of queuine tRNA-ribosyltransferases EC:2.4.2.29, also 
known as tRNA-guanine transglycosylase and guanine insertion 
enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for 
asparagine, aspartic acid, histidine and tyrosine with queuine. 
It catalyzes the exchange of guanine-34 at the wobble position 
with 7-aminomethyl-7-deazaguanine, and the addition of 
a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 
tRNA; giving a hypermodified base queuine in the wobble position. 
The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, 
and important tRNA and 7-aminomethyl-7deazaguanine 
binding residues.
Length=358

 Score = 304 bits (781),  Expect = 4e-105, Method: Composition-based stats.
 Identities = 107/200 (54%), Positives = 135/200 (68%), Gaps = 9/200 (5%)

Query  1    MQLDDVIATTSPDHARIHEAMERSVRWLDRCIDAHKYPERQNLFCIIQGGLDLELRKQCC  60
            M LD+     +    R  +++ER++RW +RC++AHK PE Q LF I+QGGL  +LR++  
Sbjct  132  MALDECTPYPA-SRKRAEKSVERTLRWAERCLEAHKRPEDQALFGIVQGGLYPDLREESA  190

Query  61   AEMVARDTPGIAIGGLSGGEAKEEFCKVVDTCTGLLPEHKPRYVMGVGYPEDLVVAVALG  120
             E+   D  G AIGGLS GE KEE  ++V+  T LLPE KPRY+MGVG PED++ AVALG
Sbjct  191  EELAELDFDGYAIGGLSVGEPKEEMYEIVEATTPLLPEDKPRYLMGVGTPEDILEAVALG  250

Query  121  ADMFDCVWPTRTARFGNAVVPSGNLNLRHKSFAEDFRPIQEGCSCSCCRPRDQGGLGITR  180
             DMFDCV+PTR AR G A+   G LNLR+  +AEDFRP+ EGCSC  CR         +R
Sbjct  251  VDMFDCVYPTRNARNGRALTSEGTLNLRNAKYAEDFRPLDEGCSCYTCR-------NYSR  303

Query  181  AYLHHL-AAKETVGAHLLTI  199
            AYL HL  AKE +GA LLTI
Sbjct  304  AYLRHLLKAKEMLGARLLTI  323



Lambda      K        H        a         alpha
   0.324    0.140    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00029805

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase. This ...  343     2e-119


>CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase.  This is a family 
of queuine tRNA-ribosyltransferases EC:2.4.2.29, also 
known as tRNA-guanine transglycosylase and guanine insertion 
enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for 
asparagine, aspartic acid, histidine and tyrosine with queuine. 
It catalyzes the exchange of guanine-34 at the wobble position 
with 7-aminomethyl-7-deazaguanine, and the addition of 
a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 
tRNA; giving a hypermodified base queuine in the wobble position. 
The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, 
and important tRNA and 7-aminomethyl-7deazaguanine 
binding residues.
Length=358

 Score = 343 bits (882),  Expect = 2e-119, Method: Composition-based stats.
 Identities = 122/252 (48%), Positives = 154/252 (61%), Gaps = 27/252 (11%)

Query  1    MQLDDVIATTSPDHARIHEAMERSVRWLDRCIDAHKYPERQNLFCIIQGGLDLELRKQCC  60
            M LD+     +    R  +++ER++RW +RC++AHK PE Q LF I+QGGL  +LR++  
Sbjct  132  MALDECTPYPA-SRKRAEKSVERTLRWAERCLEAHKRPEDQALFGIVQGGLYPDLREESA  190

Query  61   AEMVARDTPGIAIGGLSGGEAKEEFCKVVDTCTGLLPEHKPRYVMGVVSTRWPIRLAVSF  120
             E+   D  G AIGGLS GE KEE  ++V+  T LLPE KPRY+MGV             
Sbjct  191  EELAELDFDGYAIGGLSVGEPKEEMYEIVEATTPLLPEDKPRYLMGV-------------  237

Query  121  IDAAQGYPEDLVVAVALGADMFDCVWPTRTARFGNAVVPSGNLNLRHKSFAEDFRPIQEG  180
                 G PED++ AVALG DMFDCV+PTR AR G A+   G LNLR+  +AEDFRP+ EG
Sbjct  238  -----GTPEDILEAVALGVDMFDCVYPTRNARNGRALTSEGTLNLRNAKYAEDFRPLDEG  292

Query  181  CSCSCCRPRDQGGLGITRAYLHHL-AAKETVGAHLLTIHNVHYLLNLMGSARQAILEDRY  239
            CSC  CR         +RAYL HL  AKE +GA LLTIHN+H+ L LM   RQAI E R+
Sbjct  293  CSCYTCR-------NYSRAYLRHLLKAKEMLGARLLTIHNLHFYLELMREIRQAIKEGRF  345

Query  240  PAFLREFFDNLY  251
              F+ EF     
Sbjct  346  EEFVEEFLRKYP  357



Lambda      K        H        a         alpha
   0.325    0.140    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 277421980


Query= TCONS_00034610

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase. This ...  414     7e-147


>CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase.  This is a family 
of queuine tRNA-ribosyltransferases EC:2.4.2.29, also 
known as tRNA-guanine transglycosylase and guanine insertion 
enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for 
asparagine, aspartic acid, histidine and tyrosine with queuine. 
It catalyzes the exchange of guanine-34 at the wobble position 
with 7-aminomethyl-7-deazaguanine, and the addition of 
a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 
tRNA; giving a hypermodified base queuine in the wobble position. 
The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, 
and important tRNA and 7-aminomethyl-7deazaguanine 
binding residues.
Length=358

 Score = 414 bits (1068),  Expect = 7e-147, Method: Composition-based stats.
 Identities = 146/297 (49%), Positives = 185/297 (62%), Gaps = 27/297 (9%)

Query  1    MVSLLKLAKVTEEGVRFLSPHDGTPMLLTPEHSISLQNSIGSDIIMQLDDVIATTSPDHA  60
            + SL KL K+TEEGV F S  DG+   LTPE S+ +Q ++GSDI M LD+     +    
Sbjct  87   VFSLAKLRKITEEGVTFRSHIDGSKHFLTPEESMEIQEALGSDIAMALDECTPYPA-SRK  145

Query  61   RIHEAMERSVRWLDRCIDAHKYPERQNLFCIIQGGLDLELRKQCCAEMVARDTPGIAIGG  120
            R  +++ER++RW +RC++AHK PE Q LF I+QGGL  +LR++   E+   D  G AIGG
Sbjct  146  RAEKSVERTLRWAERCLEAHKRPEDQALFGIVQGGLYPDLREESAEELAELDFDGYAIGG  205

Query  121  LSGGEAKEEFCKVVDTCTGLLPEHKPRYVMGVVSTRWPIRLAVSFIDAAQGYPEDLVVAV  180
            LS GE KEE  ++V+  T LLPE KPRY+MGV                  G PED++ AV
Sbjct  206  LSVGEPKEEMYEIVEATTPLLPEDKPRYLMGV------------------GTPEDILEAV  247

Query  181  ALGADMFDCVWPTRTARFGNAVVPSGNLNLRHKSFAEDFRPIQEGCSCSCCRPRDQGGLG  240
            ALG DMFDCV+PTR AR G A+   G LNLR+  +AEDFRP+ EGCSC  CR        
Sbjct  248  ALGVDMFDCVYPTRNARNGRALTSEGTLNLRNAKYAEDFRPLDEGCSCYTCR-------N  300

Query  241  ITRAYLHHL-AAKETVGAHLLTIHNVHYLLNLMGSARQAILEDRYPAFLREFFDNLY  296
             +RAYL HL  AKE +GA LLTIHN+H+ L LM   RQAI E R+  F+ EF     
Sbjct  301  YSRAYLRHLLKAKEMLGARLLTIHNLHFYLELMREIRQAIKEGRFEEFVEEFLRKYP  357



Lambda      K        H        a         alpha
   0.323    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00029806

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase. This ...  568     0.0  


>CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase.  This is a family 
of queuine tRNA-ribosyltransferases EC:2.4.2.29, also 
known as tRNA-guanine transglycosylase and guanine insertion 
enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for 
asparagine, aspartic acid, histidine and tyrosine with queuine. 
It catalyzes the exchange of guanine-34 at the wobble position 
with 7-aminomethyl-7-deazaguanine, and the addition of 
a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 
tRNA; giving a hypermodified base queuine in the wobble position. 
The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, 
and important tRNA and 7-aminomethyl-7deazaguanine 
binding residues.
Length=358

 Score = 568 bits (1467),  Expect = 0.0, Method: Composition-based stats.
 Identities = 193/363 (53%), Positives = 242/363 (67%), Gaps = 9/363 (2%)

Query  69   KARASTLHLPHGSVPLPIFMPVATQASLKGLTYDQLKQTGCMLCLNNTYHLGLKPGQEVL  128
             AR   L  PHG +  P FMPV TQ ++KGLT D+LK+ G  + L NTYHL L+PG E++
Sbjct  3    AARLGRLTTPHGVIETPAFMPVGTQGTVKGLTPDELKELGAQIILGNTYHLYLRPGLELV  62

Query  129  DQVGGAHKLQGWDRNILTDSGGFQMVSLLKLAKVTEEGVRFLSPHDGTPMLLTPEHSISL  188
             + GG HK  GWD  ILTDSGGFQ+ SL KL K+TEEGV F S  DG+   LTPE S+ +
Sbjct  63   AKAGGLHKFMGWDGPILTDSGGFQVFSLAKLRKITEEGVTFRSHIDGSKHFLTPEESMEI  122

Query  189  QNSIGSDIIMQLDDVIATTSPDHARIHEAMERSVRWLDRCIDAHKYPERQNLFCIIQGGL  248
            Q ++GSDI M LD+     +    R  +++ER++RW +RC++AHK PE Q LF I+QGGL
Sbjct  123  QEALGSDIAMALDECTPYPA-SRKRAEKSVERTLRWAERCLEAHKRPEDQALFGIVQGGL  181

Query  249  DLELRKQCCAEMVARDTPGIAIGGLSGGEAKEEFCKVVDTCTGLLPEHKPRYVMGVGYPE  308
              +LR++   E+   D  G AIGGLS GE KEE  ++V+  T LLPE KPRY+MGVG PE
Sbjct  182  YPDLREESAEELAELDFDGYAIGGLSVGEPKEEMYEIVEATTPLLPEDKPRYLMGVGTPE  241

Query  309  DLVVAVALGADMFDCVWPTRTARFGNAVVPSGNLNLRHKSFAEDFRPIQEGCSCSCCRPR  368
            D++ AVALG DMFDCV+PTR AR G A+   G LNLR+  +AEDFRP+ EGCSC  CR  
Sbjct  242  DILEAVALGVDMFDCVYPTRNARNGRALTSEGTLNLRNAKYAEDFRPLDEGCSCYTCR--  299

Query  369  DQGGLGITRAYLHHL-AAKETVGAHLLTIHNVHYLLNLMGSARQAILEDRYPAFLREFFD  427
                   +RAYL HL  AKE +GA LLTIHN+H+ L LM   RQAI E R+  F+ EF  
Sbjct  300  -----NYSRAYLRHLLKAKEMLGARLLTIHNLHFYLELMREIRQAIKEGRFEEFVEEFLR  354

Query  428  NLY  430
               
Sbjct  355  KYP  357



Lambda      K        H        a         alpha
   0.322    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 529127880


Query= TCONS_00034611

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase. This ...  384     5e-134


>CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase.  This is a family 
of queuine tRNA-ribosyltransferases EC:2.4.2.29, also 
known as tRNA-guanine transglycosylase and guanine insertion 
enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for 
asparagine, aspartic acid, histidine and tyrosine with queuine. 
It catalyzes the exchange of guanine-34 at the wobble position 
with 7-aminomethyl-7-deazaguanine, and the addition of 
a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 
tRNA; giving a hypermodified base queuine in the wobble position. 
The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, 
and important tRNA and 7-aminomethyl-7deazaguanine 
binding residues.
Length=358

 Score = 384 bits (988),  Expect = 5e-134, Method: Composition-based stats.
 Identities = 124/237 (52%), Positives = 160/237 (68%), Gaps = 1/237 (0%)

Query  69   KARASTLHLPHGSVPLPIFMPVATQASLKGLTYDQLKQTGCMLCLNNTYHLGLKPGQEVL  128
             AR   L  PHG +  P FMPV TQ ++KGLT D+LK+ G  + L NTYHL L+PG E++
Sbjct  3    AARLGRLTTPHGVIETPAFMPVGTQGTVKGLTPDELKELGAQIILGNTYHLYLRPGLELV  62

Query  129  DQVGGAHKLQGWDRNILTDSGGFQMVSLLKLAKVTEEGVRFLSPHDGTPMLLTPEHSISL  188
             + GG HK  GWD  ILTDSGGFQ+ SL KL K+TEEGV F S  DG+   LTPE S+ +
Sbjct  63   AKAGGLHKFMGWDGPILTDSGGFQVFSLAKLRKITEEGVTFRSHIDGSKHFLTPEESMEI  122

Query  189  QNSIGSDIIMQLDDVIATTSPDHARIHEAMERSVRWLDRCIDAHKYPERQNLFCIIQGGL  248
            Q ++GSDI M LD+     +    R  +++ER++RW +RC++AHK PE Q LF I+QGGL
Sbjct  123  QEALGSDIAMALDECTPYPA-SRKRAEKSVERTLRWAERCLEAHKRPEDQALFGIVQGGL  181

Query  249  DLELRKQCCAEMVARDTPGIAIGGLSGGEAKEEFCKVVDTCTGLLPEHKPRYVMGVG  305
              +LR++   E+   D  G AIGGLS GE KEE  ++V+  T LLPE KPRY+MGVG
Sbjct  182  YPDLREESAEELAELDFDGYAIGGLSVGEPKEEMYEIVEATTPLLPEDKPRYLMGVG  238



Lambda      K        H        a         alpha
   0.320    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00034612

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase. This ...  343     2e-119


>CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase.  This is a family 
of queuine tRNA-ribosyltransferases EC:2.4.2.29, also 
known as tRNA-guanine transglycosylase and guanine insertion 
enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for 
asparagine, aspartic acid, histidine and tyrosine with queuine. 
It catalyzes the exchange of guanine-34 at the wobble position 
with 7-aminomethyl-7-deazaguanine, and the addition of 
a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 
tRNA; giving a hypermodified base queuine in the wobble position. 
The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, 
and important tRNA and 7-aminomethyl-7deazaguanine 
binding residues.
Length=358

 Score = 343 bits (882),  Expect = 2e-119, Method: Composition-based stats.
 Identities = 122/252 (48%), Positives = 154/252 (61%), Gaps = 27/252 (11%)

Query  1    MQLDDVIATTSPDHARIHEAMERSVRWLDRCIDAHKYPERQNLFCIIQGGLDLELRKQCC  60
            M LD+     +    R  +++ER++RW +RC++AHK PE Q LF I+QGGL  +LR++  
Sbjct  132  MALDECTPYPA-SRKRAEKSVERTLRWAERCLEAHKRPEDQALFGIVQGGLYPDLREESA  190

Query  61   AEMVARDTPGIAIGGLSGGEAKEEFCKVVDTCTGLLPEHKPRYVMGVVSTRWPIRLAVSF  120
             E+   D  G AIGGLS GE KEE  ++V+  T LLPE KPRY+MGV             
Sbjct  191  EELAELDFDGYAIGGLSVGEPKEEMYEIVEATTPLLPEDKPRYLMGV-------------  237

Query  121  IDAAQGYPEDLVVAVALGADMFDCVWPTRTARFGNAVVPSGNLNLRHKSFAEDFRPIQEG  180
                 G PED++ AVALG DMFDCV+PTR AR G A+   G LNLR+  +AEDFRP+ EG
Sbjct  238  -----GTPEDILEAVALGVDMFDCVYPTRNARNGRALTSEGTLNLRNAKYAEDFRPLDEG  292

Query  181  CSCSCCRPRDQGGLGITRAYLHHL-AAKETVGAHLLTIHNVHYLLNLMGSARQAILEDRY  239
            CSC  CR         +RAYL HL  AKE +GA LLTIHN+H+ L LM   RQAI E R+
Sbjct  293  CSCYTCR-------NYSRAYLRHLLKAKEMLGARLLTIHNLHFYLELMREIRQAIKEGRF  345

Query  240  PAFLREFFDNLY  251
              F+ EF     
Sbjct  346  EEFVEEFLRKYP  357



Lambda      K        H        a         alpha
   0.325    0.140    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 277421980


Query= TCONS_00034614

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase. This ...  425     3e-151


>CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase.  This is a family 
of queuine tRNA-ribosyltransferases EC:2.4.2.29, also 
known as tRNA-guanine transglycosylase and guanine insertion 
enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for 
asparagine, aspartic acid, histidine and tyrosine with queuine. 
It catalyzes the exchange of guanine-34 at the wobble position 
with 7-aminomethyl-7-deazaguanine, and the addition of 
a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 
tRNA; giving a hypermodified base queuine in the wobble position. 
The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, 
and important tRNA and 7-aminomethyl-7deazaguanine 
binding residues.
Length=358

 Score = 425 bits (1096),  Expect = 3e-151, Method: Composition-based stats.
 Identities = 146/279 (52%), Positives = 185/279 (66%), Gaps = 9/279 (3%)

Query  1    MVSLLKLAKVTEEGVRFLSPHDGTPMLLTPEHSISLQNSIGSDIIMQLDDVIATTSPDHA  60
            + SL KL K+TEEGV F S  DG+   LTPE S+ +Q ++GSDI M LD+     +    
Sbjct  87   VFSLAKLRKITEEGVTFRSHIDGSKHFLTPEESMEIQEALGSDIAMALDECTPYPA-SRK  145

Query  61   RIHEAMERSVRWLDRCIDAHKYPERQNLFCIIQGGLDLELRKQCCAEMVARDTPGIAIGG  120
            R  +++ER++RW +RC++AHK PE Q LF I+QGGL  +LR++   E+   D  G AIGG
Sbjct  146  RAEKSVERTLRWAERCLEAHKRPEDQALFGIVQGGLYPDLREESAEELAELDFDGYAIGG  205

Query  121  LSGGEAKEEFCKVVDTCTGLLPEHKPRYVMGVGYPEDLVVAVALGADMFDCVWPTRTARF  180
            LS GE KEE  ++V+  T LLPE KPRY+MGVG PED++ AVALG DMFDCV+PTR AR 
Sbjct  206  LSVGEPKEEMYEIVEATTPLLPEDKPRYLMGVGTPEDILEAVALGVDMFDCVYPTRNARN  265

Query  181  GNAVVPSGNLNLRHKSFAEDFRPIQEGCSCSCCRPRDQGGLGITRAYLHHL-AAKETVGA  239
            G A+   G LNLR+  +AEDFRP+ EGCSC  CR         +RAYL HL  AKE +GA
Sbjct  266  GRALTSEGTLNLRNAKYAEDFRPLDEGCSCYTCR-------NYSRAYLRHLLKAKEMLGA  318

Query  240  HLLTIHNVHYLLNLMGSARQAILEDRYPAFLREFFDNLY  278
             LLTIHN+H+ L LM   RQAI E R+  F+ EF     
Sbjct  319  RLLTIHNLHFYLELMREIRQAIKEGRFEEFVEEFLRKYP  357



Lambda      K        H        a         alpha
   0.323    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 342412870


Query= TCONS_00034613

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase. This ...  546     0.0  


>CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase.  This is a family 
of queuine tRNA-ribosyltransferases EC:2.4.2.29, also 
known as tRNA-guanine transglycosylase and guanine insertion 
enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for 
asparagine, aspartic acid, histidine and tyrosine with queuine. 
It catalyzes the exchange of guanine-34 at the wobble position 
with 7-aminomethyl-7-deazaguanine, and the addition of 
a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 
tRNA; giving a hypermodified base queuine in the wobble position. 
The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, 
and important tRNA and 7-aminomethyl-7deazaguanine 
binding residues.
Length=358

 Score = 546 bits (1410),  Expect = 0.0, Method: Composition-based stats.
 Identities = 191/381 (50%), Positives = 240/381 (63%), Gaps = 27/381 (7%)

Query  69   KARASTLHLPHGSVPLPIFMPVATQASLKGLTYDQLKQTGCMLCLNNTYHLGLKPGQEVL  128
             AR   L  PHG +  P FMPV TQ ++KGLT D+LK+ G  + L NTYHL L+PG E++
Sbjct  3    AARLGRLTTPHGVIETPAFMPVGTQGTVKGLTPDELKELGAQIILGNTYHLYLRPGLELV  62

Query  129  DQVGGAHKLQGWDRNILTDSGGFQMVSLLKLAKVTEEGVRFLSPHDGTPMLLTPEHSISL  188
             + GG HK  GWD  ILTDSGGFQ+ SL KL K+TEEGV F S  DG+   LTPE S+ +
Sbjct  63   AKAGGLHKFMGWDGPILTDSGGFQVFSLAKLRKITEEGVTFRSHIDGSKHFLTPEESMEI  122

Query  189  QNSIGSDIIMQLDDVIATTSPDHARIHEAMERSVRWLDRCIDAHKYPERQNLFCIIQGGL  248
            Q ++GSDI M LD+     +    R  +++ER++RW +RC++AHK PE Q LF I+QGGL
Sbjct  123  QEALGSDIAMALDECTPYPA-SRKRAEKSVERTLRWAERCLEAHKRPEDQALFGIVQGGL  181

Query  249  DLELRKQCCAEMVARDTPGIAIGGLSGGEAKEEFCKVVDTCTGLLPEHKPRYVMGVVSTR  308
              +LR++   E+   D  G AIGGLS GE KEE  ++V+  T LLPE KPRY+MGV    
Sbjct  182  YPDLREESAEELAELDFDGYAIGGLSVGEPKEEMYEIVEATTPLLPEDKPRYLMGV----  237

Query  309  WPIRLAVSFIDAAQGYPEDLVVAVALGADMFDCVWPTRTAVRTNAVVPSGNLNLRHKSFA  368
                          G PED++ AVALG DMFDCV+PTR A    A+   G LNLR+  +A
Sbjct  238  --------------GTPEDILEAVALGVDMFDCVYPTRNARNGRALTSEGTLNLRNAKYA  283

Query  369  EDFRPIQEGCSCSCCRPRDQGGLGITRAYLHHL-AAKETVGAHLLTIHNVHYLLNLMGSA  427
            EDFRP+ EGCSC  CR         +RAYL HL  AKE +GA LLTIHN+H+ L LM   
Sbjct  284  EDFRPLDEGCSCYTCR-------NYSRAYLRHLLKAKEMLGARLLTIHNLHFYLELMREI  336

Query  428  RQAILEDRYPAFLREFFDNLY  448
            RQAI E R+  F+ EF     
Sbjct  337  RQAIKEGRFEEFVEEFLRKYP  357



Lambda      K        H        a         alpha
   0.322    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 585874928


Query= TCONS_00029807

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase. This ...  183     2e-58


>CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase.  This is a family 
of queuine tRNA-ribosyltransferases EC:2.4.2.29, also 
known as tRNA-guanine transglycosylase and guanine insertion 
enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for 
asparagine, aspartic acid, histidine and tyrosine with queuine. 
It catalyzes the exchange of guanine-34 at the wobble position 
with 7-aminomethyl-7-deazaguanine, and the addition of 
a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 
tRNA; giving a hypermodified base queuine in the wobble position. 
The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, 
and important tRNA and 7-aminomethyl-7deazaguanine 
binding residues.
Length=358

 Score = 183 bits (466),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 61/113 (54%), Positives = 76/113 (67%), Gaps = 0/113 (0%)

Query  17   KARASTLHLPHGSVPLPIFMPVATQASLKGLTYDQLKQTGCMLCLNNTYHLGLKPGQEVL  76
             AR   L  PHG +  P FMPV TQ ++KGLT D+LK+ G  + L NTYHL L+PG E++
Sbjct  3    AARLGRLTTPHGVIETPAFMPVGTQGTVKGLTPDELKELGAQIILGNTYHLYLRPGLELV  62

Query  77   DQVGGAHKLQGWDRNILTDSGGFQMVSLLKLAKVTEEGVRFLSPHDGTPMCVS  129
             + GG HK  GWD  ILTDSGGFQ+ SL KL K+TEEGV F S  DG+   ++
Sbjct  63   AKAGGLHKFMGWDGPILTDSGGFQVFSLAKLRKITEEGVTFRSHIDGSKHFLT  115



Lambda      K        H        a         alpha
   0.320    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00034615

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase. This ...  527     0.0  


>CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase.  This is a family 
of queuine tRNA-ribosyltransferases EC:2.4.2.29, also 
known as tRNA-guanine transglycosylase and guanine insertion 
enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for 
asparagine, aspartic acid, histidine and tyrosine with queuine. 
It catalyzes the exchange of guanine-34 at the wobble position 
with 7-aminomethyl-7-deazaguanine, and the addition of 
a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 
tRNA; giving a hypermodified base queuine in the wobble position. 
The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, 
and important tRNA and 7-aminomethyl-7deazaguanine 
binding residues.
Length=358

 Score = 527 bits (1359),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/362 (51%), Positives = 233/362 (64%), Gaps = 27/362 (7%)

Query  1    MPVATQASLKGLTYDQLKQTGCMLCLNNTYHLGLKPGQEVLDQVGGAHKLQGWDRNILTD  60
            MPV TQ ++KGLT D+LK+ G  + L NTYHL L+PG E++ + GG HK  GWD  ILTD
Sbjct  22   MPVGTQGTVKGLTPDELKELGAQIILGNTYHLYLRPGLELVAKAGGLHKFMGWDGPILTD  81

Query  61   SGGFQMVSLLKLAKVTEEGVRFLSPHDGTPMLLTPEHSISLQNSIGSDIIMQLDDVIATT  120
            SGGFQ+ SL KL K+TEEGV F S  DG+   LTPE S+ +Q ++GSDI M LD+     
Sbjct  82   SGGFQVFSLAKLRKITEEGVTFRSHIDGSKHFLTPEESMEIQEALGSDIAMALDECTPYP  141

Query  121  SPDHARIHEAMERSVRWLDRCIDAHKYPERQNLFCIIQGGLDLELRKQCCAEMVARDTPG  180
            +    R  +++ER++RW +RC++AHK PE Q LF I+QGGL  +LR++   E+   D  G
Sbjct  142  A-SRKRAEKSVERTLRWAERCLEAHKRPEDQALFGIVQGGLYPDLREESAEELAELDFDG  200

Query  181  IAIGGLSGGEAKEEFCKVVDTCTGLLPEHKPRYVMGVVSTRWPIRLAVSFIDAAQGYPED  240
             AIGGLS GE KEE  ++V+  T LLPE KPRY+MGV                  G PED
Sbjct  201  YAIGGLSVGEPKEEMYEIVEATTPLLPEDKPRYLMGV------------------GTPED  242

Query  241  LVVAVALGADMFDCVWPTRTARFGNAVVPSGNLNLRHKSFAEDFRPIQEGCSCSCCRPRD  300
            ++ AVALG DMFDCV+PTR AR G A+   G LNLR+  +AEDFRP+ EGCSC  CR   
Sbjct  243  ILEAVALGVDMFDCVYPTRNARNGRALTSEGTLNLRNAKYAEDFRPLDEGCSCYTCR---  299

Query  301  QGGLGITRAYLHHL-AAKETVGAHLLTIHNVHYLLNLMGSARQAILEDRYPAFLREFFDN  359
                  +RAYL HL  AKE +GA LLTIHN+H+ L LM   RQAI E R+  F+ EF   
Sbjct  300  ----NYSRAYLRHLLKAKEMLGARLLTIHNLHFYLELMREIRQAIKEGRFEEFVEEFLRK  355

Query  360  LY  361
              
Sbjct  356  YP  357



Lambda      K        H        a         alpha
   0.322    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00029808

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase. This ...  528     0.0  


>CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase.  This is a family 
of queuine tRNA-ribosyltransferases EC:2.4.2.29, also 
known as tRNA-guanine transglycosylase and guanine insertion 
enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for 
asparagine, aspartic acid, histidine and tyrosine with queuine. 
It catalyzes the exchange of guanine-34 at the wobble position 
with 7-aminomethyl-7-deazaguanine, and the addition of 
a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 
tRNA; giving a hypermodified base queuine in the wobble position. 
The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, 
and important tRNA and 7-aminomethyl-7deazaguanine 
binding residues.
Length=358

 Score = 528 bits (1362),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/362 (51%), Positives = 233/362 (64%), Gaps = 27/362 (7%)

Query  1    MPVATQASLKGLTYDQLKQTGCMLCLNNTYHLGLKPGQEVLDQVGGAHKLQGWDRNILTD  60
            MPV TQ ++KGLT D+LK+ G  + L NTYHL L+PG E++ + GG HK  GWD  ILTD
Sbjct  22   MPVGTQGTVKGLTPDELKELGAQIILGNTYHLYLRPGLELVAKAGGLHKFMGWDGPILTD  81

Query  61   SGGFQMVSLLKLAKVTEEGVRFLSPHDGTPMLLTPEHSISLQNSIGSDIIMQLDDVIATT  120
            SGGFQ+ SL KL K+TEEGV F S  DG+   LTPE S+ +Q ++GSDI M LD+     
Sbjct  82   SGGFQVFSLAKLRKITEEGVTFRSHIDGSKHFLTPEESMEIQEALGSDIAMALDECTPYP  141

Query  121  SPDHARIHEAMERSVRWLDRCIDAHKYPERQNLFCIIQGGLDLELRKQCCAEMVARDTPG  180
            +    R  +++ER++RW +RC++AHK PE Q LF I+QGGL  +LR++   E+   D  G
Sbjct  142  A-SRKRAEKSVERTLRWAERCLEAHKRPEDQALFGIVQGGLYPDLREESAEELAELDFDG  200

Query  181  IAIGGLSGGEAKEEFCKVVDTCTGLLPEHKPRYVMGVVSTRWPIRLAVSFIDAAQGYPED  240
             AIGGLS GE KEE  ++V+  T LLPE KPRY+MGV                  G PED
Sbjct  201  YAIGGLSVGEPKEEMYEIVEATTPLLPEDKPRYLMGV------------------GTPED  242

Query  241  LVVAVALGADMFDCVWPTRTARFGNAVVPSGNLNLRHKSFAEDFRPIQEGCSCSCCRPRD  300
            ++ AVALG DMFDCV+PTR AR G A+   G LNLR+  +AEDFRP+ EGCSC  CR   
Sbjct  243  ILEAVALGVDMFDCVYPTRNARNGRALTSEGTLNLRNAKYAEDFRPLDEGCSCYTCR---  299

Query  301  QGGLGITRAYLHHL-AAKETVGAHLLTIHNVHYLLNLMGSARQAILEDRYPAFLREFFDN  359
                  +RAYL HL  AKE +GA LLTIHN+H+ L LM   RQAI E R+  F+ EF   
Sbjct  300  ----NYSRAYLRHLLKAKEMLGARLLTIHNLHFYLELMREIRQAIKEGRFEEFVEEFLRK  355

Query  360  LY  361
              
Sbjct  356  YP  357



Lambda      K        H        a         alpha
   0.322    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 459789232


Query= TCONS_00034617

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459753 pfam00303, Thymidylat_synt, Thymidylate synthase. This...  462     3e-166


>CDD:459753 pfam00303, Thymidylat_synt, Thymidylate synthase.  This is a 
family of proteins that are flavin-dependent thymidylate synthases.
Length=259

 Score = 462 bits (1191),  Expect = 3e-166, Method: Composition-based stats.
 Identities = 155/301 (51%), Positives = 190/301 (63%), Gaps = 42/301 (14%)

Query  40   HQYLNLIRTILAEGEHRPDRTGTGTRSIFAPPQLRFSLSKPGATPSSDPIPILPLLTTKR  99
             QYL+L+R IL  G  + DRTGTGT S+F   Q+RF LS              PLLTTK+
Sbjct  1    KQYLDLLRDILENGTEKEDRTGTGTLSVFGY-QMRFDLSDGE----------FPLLTTKK  49

Query  100  VFLRAVIAELLWFISGCTSSIPLSEAGIKIWDGNGSREFLDKVGLGHREVGDLGPVYGFQ  159
            VF +++I ELLWF+ G T+   L E G+ IWD     E+ D       E GDLGPVYGFQ
Sbjct  50   VFWKSIIHELLWFLRGDTNIKYLQENGVHIWD-----EWAD-------ENGDLGPVYGFQ  97

Query  160  WRHFGAEYIDAKTDYTGQGVDQLAEVVRKLKETPFDRRIIMSAWNPADLKKMALPPCHMF  219
            WRH+GA          G G+DQLA+V+ +LK  P  RRII+SAWNPADL KMALPPCH  
Sbjct  98   WRHWGAP--------DGGGIDQLAQVIDQLKNNPDSRRIIVSAWNPADLPKMALPPCHYL  149

Query  220  AQFYVSYPNGLDNKGSLSCLLYQRSCDMGLGVPFNIASYALLTHILAHATDLNPGTLIHT  279
             QFYV       + G LSC LYQRS D+ LGVPFNIASYALLTH++A  T L PG  +HT
Sbjct  150  FQFYV-------DGGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQVTGLEPGEFVHT  202

Query  280  MGDAHVYLDHVDALNEQLKREPTEFPELRIKRNDRGSGVVDGWKEEEFEVVGYQPHKAIK  339
            +GDAH+Y +HV+ + EQL REP   P+L+I R       +  +  E+FE+ GYQPH  IK
Sbjct  203  IGDAHIYDNHVEQVKEQLTREPRPLPKLKINRKVS----IFDFTFEDFELEGYQPHPKIK  258

Query  340  M  340
             
Sbjct  259  A  259



Lambda      K        H        a         alpha
   0.319    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00029810

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459753 pfam00303, Thymidylat_synt, Thymidylate synthase. This...  461     2e-166


>CDD:459753 pfam00303, Thymidylat_synt, Thymidylate synthase.  This is a 
family of proteins that are flavin-dependent thymidylate synthases.
Length=259

 Score = 461 bits (1190),  Expect = 2e-166, Method: Composition-based stats.
 Identities = 155/301 (51%), Positives = 190/301 (63%), Gaps = 42/301 (14%)

Query  29   HQYLNLIRTILAEGEHRPDRTGTGTRSIFAPPQLRFSLSKPGATPSSDPIPILPLLTTKR  88
             QYL+L+R IL  G  + DRTGTGT S+F   Q+RF LS              PLLTTK+
Sbjct  1    KQYLDLLRDILENGTEKEDRTGTGTLSVFGY-QMRFDLSDGE----------FPLLTTKK  49

Query  89   VFLRAVIAELLWFISGCTSSIPLSEAGIKIWDGNGSREFLDKVGLGHREVGDLGPVYGFQ  148
            VF +++I ELLWF+ G T+   L E G+ IWD     E+ D       E GDLGPVYGFQ
Sbjct  50   VFWKSIIHELLWFLRGDTNIKYLQENGVHIWD-----EWAD-------ENGDLGPVYGFQ  97

Query  149  WRHFGAEYIDAKTDYTGQGVDQLAEVVRKLKETPFDRRIIMSAWNPADLKKMALPPCHMF  208
            WRH+GA          G G+DQLA+V+ +LK  P  RRII+SAWNPADL KMALPPCH  
Sbjct  98   WRHWGAP--------DGGGIDQLAQVIDQLKNNPDSRRIIVSAWNPADLPKMALPPCHYL  149

Query  209  AQFYVSYPNGLDNKGSLSCLLYQRSCDMGLGVPFNIASYALLTHILAHATDLNPGTLIHT  268
             QFYV       + G LSC LYQRS D+ LGVPFNIASYALLTH++A  T L PG  +HT
Sbjct  150  FQFYV-------DGGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQVTGLEPGEFVHT  202

Query  269  MGDAHVYLDHVDALNEQLKREPTEFPELRIKRNDRGSGVVDGWKEEEFEVVGYQPHKAIK  328
            +GDAH+Y +HV+ + EQL REP   P+L+I R       +  +  E+FE+ GYQPH  IK
Sbjct  203  IGDAHIYDNHVEQVKEQLTREPRPLPKLKINRKVS----IFDFTFEDFELEGYQPHPKIK  258

Query  329  M  329
             
Sbjct  259  A  259



Lambda      K        H        a         alpha
   0.319    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00029812

Length=1191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain. ...  202     2e-58


>CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain.  Histones 
can be reversibly acetylated on several lysine residues. 
Regulation of transcription is caused in part by this mechanism. 
Histone deacetylases catalyze the removal of the acetyl 
group. Histone deacetylases are related to other proteins.
Length=298

 Score = 202 bits (515),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 93/339 (27%), Positives = 133/339 (39%), Gaps = 73/339 (22%)

Query  260  PITSAAVTHVHGTKWMDELKTMCDAAESRLALNGKELVRPRSSGKDGDSAKKAPLNDGDL  319
            P T   +  VH  ++++ L+       + L L+                       D D 
Sbjct  31   PATEEELLLVHSPEYLEFLEEAAPEGGALLLLSYL-------------------SGDDDT  71

Query  320  YLCSESLNAFEGALGGVCEGVDAVFNSNTTKRAFVCIRPPGHHCSTSHPSGFCWINNVHV  379
             +   S  A   A GG     DAV  S   + AF  +RPPGHH      SGFC  NNV +
Sbjct  72   PVSPGSYEAALLAAGGTLAAADAV-LSGEARNAFALVRPPGHHAERDRASGFCIFNNVAI  130

Query  380  GITYAAMTHGLTHAAILDFDLHHGDGSQDIAWEQNQKAVSAAWNAANHKKTRIGYFSLH-  438
               Y    +GL   AI+DFD+HHG+G+Q+I ++                   +   S+H 
Sbjct  131  AAKYLREKYGLKRVAIVDFDVHHGNGTQEIFYDDP----------------SVLTLSIHQ  174

Query  439  -DINSFPCEYGDVEKVRNASVCIDKAHGQSIWNVHLETWKSDAEFWEIYAAKYTILLEKA  497
                 +P   G  ++         K  G    NV L     DAE+   +     ILL   
Sbjct  175  YPGGFYPGT-GFADETG-----EGKGKG-YTLNVPLPPGTGDAEYLAAF---EEILLPAL  224

Query  498  RAFLRLHTERLLDSAPGDTPPKAAIFISAGFDASEWEGSGMQRHQVNVPTEFYAKFTADV  557
              F            P        I +SAGFDA      G     +N+ TE +A+ T  +
Sbjct  225  EEF-----------QPD------LILVSAGFDAHA----GDPLGGLNLTTEGFAEITRIL  263

Query  558  VQMAEEEGLGVDGRVISVLEGGYSNRALTSGVLSHLAAL  596
            +++A      +  RV+SVLEGGY+  AL     + LAAL
Sbjct  264  LELA----DPLCIRVVSVLEGGYNLDALARSATAVLAAL  298



Lambda      K        H        a         alpha
   0.310    0.123    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1527484372


Query= TCONS_00034618

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00034619

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region. This ...  219     1e-64
CDD:426707 pfam02296, Alpha_adaptin_C, Alpha adaptin AP2, C-termi...  165     2e-49
CDD:460735 pfam02883, Alpha_adaptinC2, Adaptin C-terminal domain....  83.1    8e-20


>CDD:396262 pfam01602, Adaptin_N, Adaptin N terminal region.  This family 
consists of the N terminal region of various alpha, beta and 
gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein 
complexes. The adaptor protein (AP) complexes are involved in 
the formation of clathrin-coated pits and vesicles. The N-terminal 
region of the various adaptor proteins (APs) is constant 
by comparison to the C-terminal which is variable within 
members of the AP-2 family; and it has been proposed that 
this constant region interacts with another uniform component 
of the coated vesicles.
Length=523

 Score = 219 bits (561),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 91/291 (31%), Positives = 155/291 (53%), Gaps = 13/291 (4%)

Query  14   NNAQNAILFEAINLLIHLDTEHNLMMQISSRLGKYIQSRETNVRYLGLEAMTHFAA-RAE  72
             N+ NA+L+E  N ++HL     L++   + LG+ + S + N+RY+ L  +        +
Sbjct  238  QNSNNAVLYETANTIVHLAPAPELIVLAVNALGRLLSSPDENLRYVALRNLNKIVMKEPK  297

Query  73   TLDPIKKHQNIILGSLR-DRDISVRRKGLDLIYSMCDTTNAAPIVNELLRYLQ-TADYAI  130
             +    +H ++I+  L+ D DIS+R + LDL+Y++ + +N   IV ELL+Y+   AD   
Sbjct  298  AV----QHLDLIIFCLKTDDDISIRLRALDLLYALVNESNVKEIVKELLKYVHEIADPDF  353

Query  131  REEMVLKVAILTEKYATDAQWYIDITLKLLSLAGDHVNDEVWQRVIQIVTNNEELQAYAA  190
            + E+V  +  L EK+ TDA+WY+D+ L LLSLAG +V DE+ + +  I+ N  EL+ Y  
Sbjct  354  KIELVRAIGRLAEKFPTDAEWYLDVLLDLLSLAGSYVVDEIVEVIRDIIQNVPELREYIL  413

Query  191  HTLLGYLKTDCHESLVKIGCYVLGEFGHLIADNEGSSPIEQFLALQGKMITSNDNTRAMI  250
              L   L+       +    ++LGE+G LI +  GSSP +   ++    +  +   RA  
Sbjct  414  EHLCELLEDIESPEALAAALWILGEYGELIPN--GSSPPDLLRSILEVFVLESAKVRAAA  471

Query  251  LSSFIKFVNLFPE--IKPQLLHIFRLYS--HSPDTELQQRAFEYLTLATLP  297
            L++  K     PE   +  ++ +    +   S D E++ RA EYL L +L 
Sbjct  472  LTALAKLGLTSPEETTQNLIIQLLLTLATQDSLDLEVRDRAVEYLRLLSLA  522


>CDD:426707 pfam02296, Alpha_adaptin_C, Alpha adaptin AP2, C-terminal domain. 
 Alpha adaptin is a hetero tetramer which regulates clathrin-bud 
formation. The carboxyl-terminal appendage of the 
alpha subunit regulates translocation of endocytic accessory 
proteins to the bud site.
Length=113

 Score = 165 bits (421),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 54/93 (58%), Positives = 66/93 (71%), Gaps = 1/93 (1%)

Query  533  YMEPSTLSAEEFFKRWRQIGGPPLEAQHTFGVTAKAKNVSETFTRRLVEGFHWRILENVD  592
            + EP+ LS+E+FFKRW+QIGG P EAQ  F +    K + E FTRR++EGF W IL+ VD
Sbjct  1    FFEPTELSSEDFFKRWKQIGGAPREAQKIFKLQDANKPIDEAFTRRVLEGFGWGILDGVD  60

Query  593  PNPNNIVGCAVYQSH-GGKTGCLLRLEPNYERK  624
            PNP NIVG  V  +   GK GCLLRLEPNY+ K
Sbjct  61   PNPENIVGAGVIHTSVSGKIGCLLRLEPNYQAK  93


>CDD:460735 pfam02883, Alpha_adaptinC2, Adaptin C-terminal domain.  Alpha 
adaptin is a heterotetramer which regulates clathrin-bud formation. 
The carboxyl-terminal appendage of the alpha subunit 
regulates translocation of endocytic accessory proteins to 
the bud site. This ig-fold domain is found in alpha, beta and 
gamma adaptins.
Length=111

 Score = 83.1 bits (206),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 45/111 (41%), Gaps = 5/111 (5%)

Query  422  DEGVLFEDAQIQVGLRSEY--RGHMGVVKIYISNKSSFAIGSLTTTLDNPAAPNLKIDSK  479
               VL+E   +Q+G   E   R     + +  +NKSS  I + +     P +  L++   
Sbjct  1    PPVVLYESDGLQIGFSFERSRRPGQIRITLTFTNKSSSPISNFSFQAAVPKSLKLQLQPP  60

Query  480  SLPEPSVPAAGQTQQTLLVEAHGPFSDAPTIRISYL---AGALQAYTLQLP  527
            S         GQ  Q LL+E  G       ++ISYL   A   Q   L+ P
Sbjct  61   SSNVLPPNPGGQITQVLLIENPGKKPLRMRLKISYLNGGAVQEQGDVLKFP  111



Lambda      K        H        a         alpha
   0.318    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0778    0.140     1.90     42.6     43.6 

Effective search space used: 791962230


Query= TCONS_00034620

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00034621

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00034622

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00034623

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00034624

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00029815

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00029816

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00034625

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00034626

Length=23


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 75925852


Query= TCONS_00029818

Length=1418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435319 pfam16399, Aquarius_N, Intron-binding protein aquarius...  1330    0.0  
CDD:463780 pfam13087, AAA_12, AAA domain. This family of domains ...  109     2e-27


>CDD:435319 pfam16399, Aquarius_N, Intron-binding protein aquarius N-terminus. 
 This family represents the N-terminus of intron-binding 
protein aquarius, a splicing factor which links excision 
of introns from pre-mRNA with snoRP assembly.
Length=791

 Score = 1330 bits (3444),  Expect = 0.0, Method: Composition-based stats.
 Identities = 465/793 (59%), Positives = 580/793 (73%), Gaps = 10/793 (1%)

Query  23   REDSSWVQLAKTHWL--GASTVRKAKQDVIRQGLWEPLEAENFSLRSLLTLENLNILEKY  80
             ++    QLA+ HWL    S   K K +V+++  W+ LE E FSLRSLL LE L  LE Y
Sbjct  1    IQEDRIAQLARKHWLKSKKSKKVKVKPEVVKKIYWDELEKEGFSLRSLLLLEFLQYLENY  60

Query  81   LWPTYSEDASNHHVLLIALIVSIKQRDHLPIWETFSDRPGDFSNLFHRILSMSVDNSLST  140
            LWP Y+EDASN HVLLI L+V+ K R+HLP WE FSDRP DFS+ F R+LS+S+D SLST
Sbjct  61   LWPNYTEDASNAHVLLIVLMVNEKFREHLPAWELFSDRPDDFSSFFRRVLSLSLDRSLST  120

Query  141  FSRQSILSFIISAFQSLENVLIRKECAPLVSISIWHNLSSEELRDRIFAKVPSLKKAWRA  200
              R ++LSF+I AFQSLEN L+RKECAPLVSISIWHNLSSE  R++   K P L+KAWRA
Sbjct  121  AERTALLSFLIHAFQSLENELVRKECAPLVSISIWHNLSSEGRREQELDKNPQLRKAWRA  180

Query  201  AGKRYEAGDETAKARMRFERSWLFTMLLDFLRRLNGSEQEL---SDNLRYCERFLEYLVD  257
            A KRY+A D+  KAR+RFERSWL+T+LLDFL  L    ++     DN+RYCERFLE L+D
Sbjct  181  AQKRYDAADDATKARLRFERSWLYTLLLDFLDVLYDIPEDGEVDDDNVRYCERFLELLID  240

Query  258  LESQLPTRRYVNTLLKDLNLLPVIRLSQMYRSPGNALFRDLVELLNHFSGFAIDDYTGEP  317
            LESQLPTRRYVNTLL+DL+LLP  RLS +Y      LFR L++LL H++ F IDD TGE 
Sbjct  241  LESQLPTRRYVNTLLQDLHLLPACRLSPLYNDEEGGLFRQLLDLLKHYTYFEIDDQTGEQ  300

Query  318  LDPQAIYESHSRELAHLQRTAMKHFKDKLMILALSNYGSIEQRSELEGQLSALNDSELQS  377
            L  Q +Y++H   LA LQRTA KHFK+KL ILALSNYGSI++R ELE  LSAL+D EL+ 
Sbjct  301  LSDQEVYDAHYARLARLQRTAFKHFKEKLTILALSNYGSIDKREELEKHLSALSDEELRE  360

Query  378  LCMHLGFRT-DYPKQSGVIPTRHLYLEILLSFYERKVPFQETASRLSIVPTEKDLYDPSF  436
            LC  LG RT  YP+   ++  R   LE+LLS +E++   QE A+ L + PTEK L+D + 
Sbjct  361  LCSLLGLRTVPYPESDNIVYDRKFLLEVLLSRFEKRPSQQEAANELPLYPTEKTLWDENL  420

Query  437  LRNETYDGSRPLAIPKLNLQYLSLGDFLWRSFLLYRSEAFFQVRKDMEAIIKRMQPRSSR  496
            +R E YDGSRPLA+PKLNLQYL+LGDFL R+F L+R E+F+++R+D+E  +KR++PR   
Sbjct  421  VRTEYYDGSRPLALPKLNLQYLTLGDFLLRNFNLFRLESFYEIRQDIEDAVKRLKPRLGE  480

Query  497  DGKTLTFDGFSRMAIPISKPAIIEVAPPKVGSSDPAFVRAEIAIEVGRLADHIRKEWDSL  556
            DG+T  F G+SRMA+PISKPAI+EVAPP VG S P+ VRAE+ I+V RL D+IR+EW+SL
Sbjct  481  DGET-RFGGWSRMALPISKPAIVEVAPPNVGESKPSRVRAEVTIDVSRLRDNIRREWESL  539

Query  557  RPDDVVFLLAVQP--GTANNSVFRDSSVETPSLMHLRTATVVQVLDEQGRPLREPVVGHT  614
            RP DVVFLLAV+P   T N      S  E   L+++R A V+QVLDE GR LREP  G T
Sbjct  540  RPHDVVFLLAVRPPDETYNKLTGSQSFAEQLGLVYVRGAEVIQVLDENGRVLREP-QGQT  598

Query  615  NGYQSRPRLRRLLLNLDPSAFKADKDRTSQGKQDIYPLINVIARRKGRENNFRSILENMQ  674
            NG + RPR RRL + LD + +KAD DR ++GK D+Y   NV+ RRK RENNF+++LE ++
Sbjct  599  NGPEPRPRQRRLRVRLDANQYKADMDRAAEGKPDVYETFNVLVRRKPRENNFKAVLETIR  658

Query  675  RLIVSDVTLPSWIQDIFLGYGDPAGARYTELPNRLKSVDFRDTFLDWQHLVESFPGCTIE  734
             L+ SD  +P W+ D+FLGYGDPA A Y  LPNRLK+VDFRDTFLDWQHL+ESFPG TIE
Sbjct  659  DLMNSDCVVPDWLHDVFLGYGDPAAAHYKNLPNRLKTVDFRDTFLDWQHLIESFPGKTIE  718

Query  735  PSGNEASSFGPPYVIEYVENTSKAPSETSLKKRRRDPVEKEGTSARVIRVSTYKQPNPGP  794
            PS + + SFGPPYV+E+ ++  +       KKRRRD           IRVSTYK PN GP
Sbjct  719  PSDDVSGSFGPPYVLEFPDSPPEPAPAKPSKKRRRDQEPAPQAEPETIRVSTYKPPNRGP  778

Query  795  YPVDAPKLNTIRF  807
            YPVDAPKLN++RF
Sbjct  779  YPVDAPKLNSVRF  791


>CDD:463780 pfam13087, AAA_12, AAA domain.  This family of domains contain 
a P-loop motif that is characteristic of the AAA superfamily. 
Many of the proteins in this family are conjugative transfer 
proteins.
Length=196

 Score = 109 bits (274),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 86/216 (40%), Gaps = 42/216 (19%)

Query  1118  FEQSLFLRLVRLG-VPVINLDQQGRARPSLAEL----------------FRWRYHQLGDL  1160
              ++SLF RL  LG   V+ LD Q R  P + E                           L
Sbjct  1     LDRSLFERLQELGPSAVVMLDTQYRMHPEIMEFPSKLFYGGKLKDGPSVAERPLPDDFHL  60

Query  1161  PIVHTAQEYKHANAGFQYDYQFINVPDYQGSGEREPTPHFIQNLGEAEYAVAIYQYMRLL  1220
             P                    FI+V   +       T     N  EAE  V + + +   
Sbjct  61    PD-------------PLGPLVFIDVDGSEEEESDGGTS--YSNEAEAELVVQLVEKLIKS  105

Query  1221  GYPA-SKISILATYAGQTALIKDVLAHRCAKNALFGMPKI-VTTVDKYQGEQNDYVILSL  1278
             G    S I ++  Y  Q  LI+ +L     K  L G  +I V TVD +QG + D +I S 
Sbjct  106   GPEEPSDIGVITPYRAQVRLIRKLL-----KRKLGGKLEIEVNTVDGFQGREKDVIIFSC  160

Query  1279  TRTR---TVGYLRDVRRLTVALSRSRLGLYILGRRE  1311
              R+     +G+L D RRL VAL+R++ GL I+G  +
Sbjct  161   VRSNEKGGIGFLSDPRRLNVALTRAKRGLIIVGNAK  196



Lambda      K        H        a         alpha
   0.320    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1817112000


Query= TCONS_00034627

Length=1287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435319 pfam16399, Aquarius_N, Intron-binding protein aquarius...  1144    0.0  
CDD:463780 pfam13087, AAA_12, AAA domain. This family of domains ...  108     2e-27


>CDD:435319 pfam16399, Aquarius_N, Intron-binding protein aquarius N-terminus. 
 This family represents the N-terminus of intron-binding 
protein aquarius, a splicing factor which links excision 
of introns from pre-mRNA with snoRP assembly.
Length=791

 Score = 1144 bits (2961),  Expect = 0.0, Method: Composition-based stats.
 Identities = 403/682 (59%), Positives = 504/682 (74%), Gaps = 8/682 (1%)

Query  1    MSVDNSLSTFSRQSILSFIISAFQSLENVLIRKECAPLVSISIWHNLSSEELRDRIFAKV  60
            +S+D SLST  R ++LSF+I AFQSLEN L+RKECAPLVSISIWHNLSSE  R++   K 
Sbjct  112  LSLDRSLSTAERTALLSFLIHAFQSLENELVRKECAPLVSISIWHNLSSEGRREQELDKN  171

Query  61   PSLKKAWRAAGKRYEAGDETAKARMRFERSWLFTMLLDFLRRLNGSEQEL---SDNLRYC  117
            P L+KAWRAA KRY+A D+  KAR+RFERSWL+T+LLDFL  L    ++     DN+RYC
Sbjct  172  PQLRKAWRAAQKRYDAADDATKARLRFERSWLYTLLLDFLDVLYDIPEDGEVDDDNVRYC  231

Query  118  ERFLEYLVDLESQLPTRRYVNTLLKDLNLLPVIRLSQMYRSPGNALFRDLVELLNHFSGF  177
            ERFLE L+DLESQLPTRRYVNTLL+DL+LLP  RLS +Y      LFR L++LL H++ F
Sbjct  232  ERFLELLIDLESQLPTRRYVNTLLQDLHLLPACRLSPLYNDEEGGLFRQLLDLLKHYTYF  291

Query  178  AIDDYTGEPLDPQAIYESHSRELAHLQRTAMKHFKDKLMILALSNYGSIEQRSELEGQLS  237
             IDD TGE L  Q +Y++H   LA LQRTA KHFK+KL ILALSNYGSI++R ELE  LS
Sbjct  292  EIDDQTGEQLSDQEVYDAHYARLARLQRTAFKHFKEKLTILALSNYGSIDKREELEKHLS  351

Query  238  ALNDSELQSLCMHLGFRT-DYPKQSGVIPTRHLYLEILLSFYERKVPFQETASRLSIVPT  296
            AL+D EL+ LC  LG RT  YP+   ++  R   LE+LLS +E++   QE A+ L + PT
Sbjct  352  ALSDEELRELCSLLGLRTVPYPESDNIVYDRKFLLEVLLSRFEKRPSQQEAANELPLYPT  411

Query  297  EKDLYDPSFLRNETYDGSRPLAIPKLNLQYLSLGDFLWRSFLLYRSEAFFQVRKDMEAII  356
            EK L+D + +R E YDGSRPLA+PKLNLQYL+LGDFL R+F L+R E+F+++R+D+E  +
Sbjct  412  EKTLWDENLVRTEYYDGSRPLALPKLNLQYLTLGDFLLRNFNLFRLESFYEIRQDIEDAV  471

Query  357  KRMQPRSSRDGKTLTFDGFSRMAIPISKPAIIEVAPPKVGSSDPAFVRAEIAIEVGRLAD  416
            KR++PR   DG+T  F G+SRMA+PISKPAI+EVAPP VG S P+ VRAE+ I+V RL D
Sbjct  472  KRLKPRLGEDGET-RFGGWSRMALPISKPAIVEVAPPNVGESKPSRVRAEVTIDVSRLRD  530

Query  417  HIRKEWDSLRPDDVVFLLAVQP--GTANNSVFRDSSVETPSLMHLRTATVVQVLDEQGRP  474
            +IR+EW+SLRP DVVFLLAV+P   T N      S  E   L+++R A V+QVLDE GR 
Sbjct  531  NIRREWESLRPHDVVFLLAVRPPDETYNKLTGSQSFAEQLGLVYVRGAEVIQVLDENGRV  590

Query  475  LREPVVGHTNGYQSRPRLRRLLLNLDPSAFKADKDRTSQGKQDIYPLINVIARRKGRENN  534
            LREP  G TNG + RPR RRL + LD + +KAD DR ++GK D+Y   NV+ RRK RENN
Sbjct  591  LREPQ-GQTNGPEPRPRQRRLRVRLDANQYKADMDRAAEGKPDVYETFNVLVRRKPRENN  649

Query  535  FRSILENMQRLIVSDVTLPSWIQDIFLGYGDPAGARYTELPNRLKSVDFRDTFLDWQHLV  594
            F+++LE ++ L+ SD  +P W+ D+FLGYGDPA A Y  LPNRLK+VDFRDTFLDWQHL+
Sbjct  650  FKAVLETIRDLMNSDCVVPDWLHDVFLGYGDPAAAHYKNLPNRLKTVDFRDTFLDWQHLI  709

Query  595  ESFPGCTIEPSGNEASSFGPPYVIEYVENTSKAPSETSLKKRRRDPVEKEGTSARVIRVS  654
            ESFPG TIEPS + + SFGPPYV+E+ ++  +       KKRRRD           IRVS
Sbjct  710  ESFPGKTIEPSDDVSGSFGPPYVLEFPDSPPEPAPAKPSKKRRRDQEPAPQAEPETIRVS  769

Query  655  TYKQPNPGPYPVDAPKLNTIRF  676
            TYK PN GPYPVDAPKLN++RF
Sbjct  770  TYKPPNRGPYPVDAPKLNSVRF  791


>CDD:463780 pfam13087, AAA_12, AAA domain.  This family of domains contain 
a P-loop motif that is characteristic of the AAA superfamily. 
Many of the proteins in this family are conjugative transfer 
proteins.
Length=196

 Score = 108 bits (273),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 86/216 (40%), Gaps = 42/216 (19%)

Query  987   FEQSLFLRLVRLG-VPVINLDQQGRARPSLAEL----------------FRWRYHQLGDL  1029
              ++SLF RL  LG   V+ LD Q R  P + E                           L
Sbjct  1     LDRSLFERLQELGPSAVVMLDTQYRMHPEIMEFPSKLFYGGKLKDGPSVAERPLPDDFHL  60

Query  1030  PIVHTAQEYKHANAGFQYDYQFINVPDYQGSGEREPTPHFIQNLGEAEYAVAIYQYMRLL  1089
             P                    FI+V   +       T     N  EAE  V + + +   
Sbjct  61    PD-------------PLGPLVFIDVDGSEEEESDGGTS--YSNEAEAELVVQLVEKLIKS  105

Query  1090  GYPA-SKISILATYAGQTALIKDVLAHRCAKNALFGMPKI-VTTVDKYQGEQNDYVILSL  1147
             G    S I ++  Y  Q  LI+ +L     K  L G  +I V TVD +QG + D +I S 
Sbjct  106   GPEEPSDIGVITPYRAQVRLIRKLL-----KRKLGGKLEIEVNTVDGFQGREKDVIIFSC  160

Query  1148  TRTR---TVGYLRDVRRLTVALSRSRLGLYILGRRE  1180
              R+     +G+L D RRL VAL+R++ GL I+G  +
Sbjct  161   VRSNEKGGIGFLSDPRRLNVALTRAKRGLIIVGNAK  196



Lambda      K        H        a         alpha
   0.320    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1636777400


Query= TCONS_00029819

Length=1418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435319 pfam16399, Aquarius_N, Intron-binding protein aquarius...  1330    0.0  
CDD:463780 pfam13087, AAA_12, AAA domain. This family of domains ...  109     2e-27


>CDD:435319 pfam16399, Aquarius_N, Intron-binding protein aquarius N-terminus. 
 This family represents the N-terminus of intron-binding 
protein aquarius, a splicing factor which links excision 
of introns from pre-mRNA with snoRP assembly.
Length=791

 Score = 1330 bits (3444),  Expect = 0.0, Method: Composition-based stats.
 Identities = 465/793 (59%), Positives = 580/793 (73%), Gaps = 10/793 (1%)

Query  23   REDSSWVQLAKTHWL--GASTVRKAKQDVIRQGLWEPLEAENFSLRSLLTLENLNILEKY  80
             ++    QLA+ HWL    S   K K +V+++  W+ LE E FSLRSLL LE L  LE Y
Sbjct  1    IQEDRIAQLARKHWLKSKKSKKVKVKPEVVKKIYWDELEKEGFSLRSLLLLEFLQYLENY  60

Query  81   LWPTYSEDASNHHVLLIALIVSIKQRDHLPIWETFSDRPGDFSNLFHRILSMSVDNSLST  140
            LWP Y+EDASN HVLLI L+V+ K R+HLP WE FSDRP DFS+ F R+LS+S+D SLST
Sbjct  61   LWPNYTEDASNAHVLLIVLMVNEKFREHLPAWELFSDRPDDFSSFFRRVLSLSLDRSLST  120

Query  141  FSRQSILSFIISAFQSLENVLIRKECAPLVSISIWHNLSSEELRDRIFAKVPSLKKAWRA  200
              R ++LSF+I AFQSLEN L+RKECAPLVSISIWHNLSSE  R++   K P L+KAWRA
Sbjct  121  AERTALLSFLIHAFQSLENELVRKECAPLVSISIWHNLSSEGRREQELDKNPQLRKAWRA  180

Query  201  AGKRYEAGDETAKARMRFERSWLFTMLLDFLRRLNGSEQEL---SDNLRYCERFLEYLVD  257
            A KRY+A D+  KAR+RFERSWL+T+LLDFL  L    ++     DN+RYCERFLE L+D
Sbjct  181  AQKRYDAADDATKARLRFERSWLYTLLLDFLDVLYDIPEDGEVDDDNVRYCERFLELLID  240

Query  258  LESQLPTRRYVNTLLKDLNLLPVIRLSQMYRSPGNALFRDLVELLNHFSGFAIDDYTGEP  317
            LESQLPTRRYVNTLL+DL+LLP  RLS +Y      LFR L++LL H++ F IDD TGE 
Sbjct  241  LESQLPTRRYVNTLLQDLHLLPACRLSPLYNDEEGGLFRQLLDLLKHYTYFEIDDQTGEQ  300

Query  318  LDPQAIYESHSRELAHLQRTAMKHFKDKLMILALSNYGSIEQRSELEGQLSALNDSELQS  377
            L  Q +Y++H   LA LQRTA KHFK+KL ILALSNYGSI++R ELE  LSAL+D EL+ 
Sbjct  301  LSDQEVYDAHYARLARLQRTAFKHFKEKLTILALSNYGSIDKREELEKHLSALSDEELRE  360

Query  378  LCMHLGFRT-DYPKQSGVIPTRHLYLEILLSFYERKVPFQETASRLSIVPTEKDLYDPSF  436
            LC  LG RT  YP+   ++  R   LE+LLS +E++   QE A+ L + PTEK L+D + 
Sbjct  361  LCSLLGLRTVPYPESDNIVYDRKFLLEVLLSRFEKRPSQQEAANELPLYPTEKTLWDENL  420

Query  437  LRNETYDGSRPLAIPKLNLQYLSLGDFLWRSFLLYRSEAFFQVRKDMEAIIKRMQPRSSR  496
            +R E YDGSRPLA+PKLNLQYL+LGDFL R+F L+R E+F+++R+D+E  +KR++PR   
Sbjct  421  VRTEYYDGSRPLALPKLNLQYLTLGDFLLRNFNLFRLESFYEIRQDIEDAVKRLKPRLGE  480

Query  497  DGKTLTFDGFSRMAIPISKPAIIEVAPPKVGSSDPAFVRAEIAIEVGRLADHIRKEWDSL  556
            DG+T  F G+SRMA+PISKPAI+EVAPP VG S P+ VRAE+ I+V RL D+IR+EW+SL
Sbjct  481  DGET-RFGGWSRMALPISKPAIVEVAPPNVGESKPSRVRAEVTIDVSRLRDNIRREWESL  539

Query  557  RPDDVVFLLAVQP--GTANNSVFRDSSVETPSLMHLRTATVVQVLDEQGRPLREPVVGHT  614
            RP DVVFLLAV+P   T N      S  E   L+++R A V+QVLDE GR LREP  G T
Sbjct  540  RPHDVVFLLAVRPPDETYNKLTGSQSFAEQLGLVYVRGAEVIQVLDENGRVLREP-QGQT  598

Query  615  NGYQSRPRLRRLLLNLDPSAFKADKDRTSQGKQDIYPLINVIARRKGRENNFRSILENMQ  674
            NG + RPR RRL + LD + +KAD DR ++GK D+Y   NV+ RRK RENNF+++LE ++
Sbjct  599  NGPEPRPRQRRLRVRLDANQYKADMDRAAEGKPDVYETFNVLVRRKPRENNFKAVLETIR  658

Query  675  RLIVSDVTLPSWIQDIFLGYGDPAGARYTELPNRLKSVDFRDTFLDWQHLVESFPGCTIE  734
             L+ SD  +P W+ D+FLGYGDPA A Y  LPNRLK+VDFRDTFLDWQHL+ESFPG TIE
Sbjct  659  DLMNSDCVVPDWLHDVFLGYGDPAAAHYKNLPNRLKTVDFRDTFLDWQHLIESFPGKTIE  718

Query  735  PSGNEASSFGPPYVIEYVENTSKAPSETSLKKRRRDPVEKEGTSARVIRVSTYKQPNPGP  794
            PS + + SFGPPYV+E+ ++  +       KKRRRD           IRVSTYK PN GP
Sbjct  719  PSDDVSGSFGPPYVLEFPDSPPEPAPAKPSKKRRRDQEPAPQAEPETIRVSTYKPPNRGP  778

Query  795  YPVDAPKLNTIRF  807
            YPVDAPKLN++RF
Sbjct  779  YPVDAPKLNSVRF  791


>CDD:463780 pfam13087, AAA_12, AAA domain.  This family of domains contain 
a P-loop motif that is characteristic of the AAA superfamily. 
Many of the proteins in this family are conjugative transfer 
proteins.
Length=196

 Score = 109 bits (274),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 86/216 (40%), Gaps = 42/216 (19%)

Query  1118  FEQSLFLRLVRLG-VPVINLDQQGRARPSLAEL----------------FRWRYHQLGDL  1160
              ++SLF RL  LG   V+ LD Q R  P + E                           L
Sbjct  1     LDRSLFERLQELGPSAVVMLDTQYRMHPEIMEFPSKLFYGGKLKDGPSVAERPLPDDFHL  60

Query  1161  PIVHTAQEYKHANAGFQYDYQFINVPDYQGSGEREPTPHFIQNLGEAEYAVAIYQYMRLL  1220
             P                    FI+V   +       T     N  EAE  V + + +   
Sbjct  61    PD-------------PLGPLVFIDVDGSEEEESDGGTS--YSNEAEAELVVQLVEKLIKS  105

Query  1221  GYPA-SKISILATYAGQTALIKDVLAHRCAKNALFGMPKI-VTTVDKYQGEQNDYVILSL  1278
             G    S I ++  Y  Q  LI+ +L     K  L G  +I V TVD +QG + D +I S 
Sbjct  106   GPEEPSDIGVITPYRAQVRLIRKLL-----KRKLGGKLEIEVNTVDGFQGREKDVIIFSC  160

Query  1279  TRTR---TVGYLRDVRRLTVALSRSRLGLYILGRRE  1311
              R+     +G+L D RRL VAL+R++ GL I+G  +
Sbjct  161   VRSNEKGGIGFLSDPRRLNVALTRAKRGLIIVGNAK  196



Lambda      K        H        a         alpha
   0.320    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1817112000


Query= TCONS_00034628

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461075 pfam03849, Tfb2, Transcription factor Tfb2                 523     0.0  
CDD:465701 pfam18307, Tfb2_C, Transcription factor Tfb2 (p52) C-t...  107     4e-29


>CDD:461075 pfam03849, Tfb2, Transcription factor Tfb2.  
Length=360

 Score = 523 bits (1349),  Expect = 0.0, Method: Composition-based stats.
 Identities = 201/375 (54%), Positives = 251/375 (67%), Gaps = 17/375 (5%)

Query  67   DYLESLPGTVFNKLYQQPSTALAIFRRMLPDLAKCFVMALLYLKDPLPAADLEAWVRPGS  126
            +YLE LP T  ++LYQ P+T LAIFR +LP LAK +VM LLYL+ P+P ADL++WV+P S
Sbjct  1    EYLEKLPPTTLDRLYQSPATCLAIFR-LLPPLAKQYVMRLLYLEQPVPLADLDSWVKPDS  59

Query  127  LKERDNALSILGRLHIMTSTTTSDNIKAYTVTDPFASSLRQALTGAEQTQSFGVLSQISD  186
             KE D AL  L  LHI+   +     +A T+   F  SLR ALTG  +  SF       D
Sbjct  60   KKEHDEALKRLKSLHILQ-ESEPGGGQAITLNPTFKKSLRLALTGGGKHNSFVPSDLPDD  118

Query  187  KEAVSIADLDEYSRRQWEGVLGYMVGTSGLGMQRDVSLSKGVKELLQAGHLVEIR-DRRV  245
            K+AV IA LDEY+R QWE +L YMVG+S  G     ++S+ V +LLQA  L+E      +
Sbjct  119  KKAVDIAFLDEYAREQWEAILHYMVGSSEAGGP--SAISEDVLKLLQASGLMEDESGGSL  176

Query  246  EITQDGFAFALQDVGTQVWHILVLYVESAAAIGMDSVEVLSFVFFLSSLELGKSYEKKQL  305
             IT  GF F LQD   QVW +L+ Y+E A + GMD VEVLSF+F LSSLELGK+Y  + L
Sbjct  177  GITSAGFQFLLQDTNAQVWTLLLQYLELAESRGMDLVEVLSFLFMLSSLELGKAYSTEGL  236

Query  306  TSNQLRTLTDLADFGIVYQETPDAT-HFYPTRLATTLTSDSSTLSNPLAGSLSGPTGTSS  364
            +  Q   L DL DFG+VYQ    +  +FYPTRLATTLTSD+S+               SS
Sbjct  237  SETQRTMLQDLRDFGLVYQRKRKSKRYFYPTRLATTLTSDASS-----------ALRGSS  285

Query  365  SKAGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAVEMGI  424
            S    GFII+ETN+R+YAYTSSPLQI+L++LF  LKYRFPNL+ G+ITR+SVRRA+  GI
Sbjct  286  SSDKEGFIIVETNFRVYAYTSSPLQIALLSLFVRLKYRFPNLVVGQITRESVRRALANGI  345

Query  425  TADQIISYLSTHAHP  439
            TADQIIS+L THAHP
Sbjct  346  TADQIISFLRTHAHP  360


>CDD:465701 pfam18307, Tfb2_C, Transcription factor Tfb2 (p52) C-terminal 
domain.  This is the C-terminal domain of Transcription factor 
Tfb2 present in Saccharomyces cerevisiae. Tfb2 is referred 
to as p52 in humans. The interaction between p8-Tfb5 and 
p52-Tfb2 has a key role in the maintenance of the transcription 
factor TFIIH architecture and TFIIHs function in nucleotide-excision 
repair (NER) pathway. The C-terminal domain of 
Tfb2 is thought to have a crucial role in DNA repair.
Length=68

 Score = 107 bits (270),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 2/68 (3%)

Query  467  DQIRLWQLERDRVKATHGFLFRDFNTLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR--H  524
            DQIRLW+LER+R+KAT G+L+ DF + A+YEA   YA+E+GVL+W+ + KRM  V+   H
Sbjct  1    DQIRLWELERNRIKATPGYLYSDFPSQADYEAVLDYAKELGVLLWEDEEKRMLVVSEEGH  60

Query  525  HQVAAFLK  532
             QV  F+K
Sbjct  61   EQVKEFIK  68



Lambda      K        H        a         alpha
   0.320    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00029820

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461075 pfam03849, Tfb2, Transcription factor Tfb2                 450     9e-159
CDD:465701 pfam18307, Tfb2_C, Transcription factor Tfb2 (p52) C-t...  107     2e-29 


>CDD:461075 pfam03849, Tfb2, Transcription factor Tfb2.  
Length=360

 Score = 450 bits (1160),  Expect = 9e-159, Method: Composition-based stats.
 Identities = 179/338 (53%), Positives = 223/338 (66%), Gaps = 16/338 (5%)

Query  1    MALLYLKDPLPAADLEAWVRPGSLKERDNALSILGRLHIMTSTTTSDNIKAYTVTDPFAS  60
            M LLYL+ P+P ADL++WV+P S KE D AL  L  LHI+   +     +A T+   F  
Sbjct  37   MRLLYLEQPVPLADLDSWVKPDSKKEHDEALKRLKSLHILQ-ESEPGGGQAITLNPTFKK  95

Query  61   SLRQALTGAEQTQSFGVLSQISDKEAVSIADLDEYSRRQWEGVLGYMVGTSGLGMQRDVS  120
            SLR ALTG  +  SF       DK+AV IA LDEY+R QWE +L YMVG+S  G     +
Sbjct  96   SLRLALTGGGKHNSFVPSDLPDDKKAVDIAFLDEYAREQWEAILHYMVGSSEAGGP--SA  153

Query  121  LSKGVKELLQAGHLVEIR-DRRVEITQDGFAFALQDVGTQVWHILVLYVESAAAIGMDSV  179
            +S+ V +LLQA  L+E      + IT  GF F LQD   QVW +L+ Y+E A + GMD V
Sbjct  154  ISEDVLKLLQASGLMEDESGGSLGITSAGFQFLLQDTNAQVWTLLLQYLELAESRGMDLV  213

Query  180  EVLSFVFFLSSLELGKSYEKKQLTSNQLRTLTDLADFGIVYQETPDAT-HFYPTRLATTL  238
            EVLSF+F LSSLELGK+Y  + L+  Q   L DL DFG+VYQ    +  +FYPTRLATTL
Sbjct  214  EVLSFLFMLSSLELGKAYSTEGLSETQRTMLQDLRDFGLVYQRKRKSKRYFYPTRLATTL  273

Query  239  TSDSSTLSNPLAGSLSGPTGTSSSKAGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKY  298
            TSD+S+               SSS    GFII+ETN+R+YAYTSSPLQI+L++LF  LKY
Sbjct  274  TSDASS-----------ALRGSSSSDKEGFIIVETNFRVYAYTSSPLQIALLSLFVRLKY  322

Query  299  RFPNLITGKITRQSVRRAVEMGITADQIISYLSTHAHP  336
            RFPNL+ G+ITR+SVRRA+  GITADQIIS+L THAHP
Sbjct  323  RFPNLVVGQITRESVRRALANGITADQIISFLRTHAHP  360


>CDD:465701 pfam18307, Tfb2_C, Transcription factor Tfb2 (p52) C-terminal 
domain.  This is the C-terminal domain of Transcription factor 
Tfb2 present in Saccharomyces cerevisiae. Tfb2 is referred 
to as p52 in humans. The interaction between p8-Tfb5 and 
p52-Tfb2 has a key role in the maintenance of the transcription 
factor TFIIH architecture and TFIIHs function in nucleotide-excision 
repair (NER) pathway. The C-terminal domain of 
Tfb2 is thought to have a crucial role in DNA repair.
Length=68

 Score = 107 bits (269),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 2/68 (3%)

Query  364  DQIRLWQLERDRVKATHGFLFRDFNTLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR--H  421
            DQIRLW+LER+R+KAT G+L+ DF + A+YEA   YA+E+GVL+W+ + KRM  V+   H
Sbjct  1    DQIRLWELERNRIKATPGYLYSDFPSQADYEAVLDYAKELGVLLWEDEEKRMLVVSEEGH  60

Query  422  HQVAAFLK  429
             QV  F+K
Sbjct  61   EQVKEFIK  68



Lambda      K        H        a         alpha
   0.319    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00034629

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461075 pfam03849, Tfb2, Transcription factor Tfb2                 398     9e-139
CDD:465701 pfam18307, Tfb2_C, Transcription factor Tfb2 (p52) C-t...  107     1e-29 


>CDD:461075 pfam03849, Tfb2, Transcription factor Tfb2.  
Length=360

 Score = 398 bits (1025),  Expect = 9e-139, Method: Composition-based stats.
 Identities = 156/295 (53%), Positives = 194/295 (66%), Gaps = 15/295 (5%)

Query  5    TTSDNIKAYTVTDPFASSLRQALTGAEQTQSFGVLSQISDKEAVSIADLDEYSRRQWEGV  64
            +     +A T+   F  SLR ALTG  +  SF       DK+AV IA LDEY+R QWE +
Sbjct  79   SEPGGGQAITLNPTFKKSLRLALTGGGKHNSFVPSDLPDDKKAVDIAFLDEYAREQWEAI  138

Query  65   LGYMVGTSGLGMQRDVSLSKGVKELLQAGHLVEIR-DRRVEITQDGFAFALQDVGTQVWH  123
            L YMVG+S  G     ++S+ V +LLQA  L+E      + IT  GF F LQD   QVW 
Sbjct  139  LHYMVGSSEAGGP--SAISEDVLKLLQASGLMEDESGGSLGITSAGFQFLLQDTNAQVWT  196

Query  124  ILVLYVESAAAIGMDSVEVLSFVFFLSSLELGKSYEKKQLTSNQLRTLTDLADFGIVYQE  183
            +L+ Y+E A + GMD VEVLSF+F LSSLELGK+Y  + L+  Q   L DL DFG+VYQ 
Sbjct  197  LLLQYLELAESRGMDLVEVLSFLFMLSSLELGKAYSTEGLSETQRTMLQDLRDFGLVYQR  256

Query  184  TPDAT-HFYPTRLATTLTSDSSTLSNPLAGSLSGPTGTSSSKAGSGFIIIETNYRLYAYT  242
               +  +FYPTRLATTLTSD+S+               SSS    GFII+ETN+R+YAYT
Sbjct  257  KRKSKRYFYPTRLATTLTSDASS-----------ALRGSSSSDKEGFIIVETNFRVYAYT  305

Query  243  SSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAVEMGITADQIISYLSTHAHP  297
            SSPLQI+L++LF  LKYRFPNL+ G+ITR+SVRRA+  GITADQIIS+L THAHP
Sbjct  306  SSPLQIALLSLFVRLKYRFPNLVVGQITRESVRRALANGITADQIISFLRTHAHP  360


>CDD:465701 pfam18307, Tfb2_C, Transcription factor Tfb2 (p52) C-terminal 
domain.  This is the C-terminal domain of Transcription factor 
Tfb2 present in Saccharomyces cerevisiae. Tfb2 is referred 
to as p52 in humans. The interaction between p8-Tfb5 and 
p52-Tfb2 has a key role in the maintenance of the transcription 
factor TFIIH architecture and TFIIHs function in nucleotide-excision 
repair (NER) pathway. The C-terminal domain of 
Tfb2 is thought to have a crucial role in DNA repair.
Length=68

 Score = 107 bits (269),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 2/68 (3%)

Query  325  DQIRLWQLERDRVKATHGFLFRDFNTLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR--H  382
            DQIRLW+LER+R+KAT G+L+ DF + A+YEA   YA+E+GVL+W+ + KRM  V+   H
Sbjct  1    DQIRLWELERNRIKATPGYLYSDFPSQADYEAVLDYAKELGVLLWEDEEKRMLVVSEEGH  60

Query  383  HQVAAFLK  390
             QV  F+K
Sbjct  61   EQVKEFIK  68



Lambda      K        H        a         alpha
   0.319    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00029821

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461075 pfam03849, Tfb2, Transcription factor Tfb2                 520     0.0  
CDD:465701 pfam18307, Tfb2_C, Transcription factor Tfb2 (p52) C-t...  108     2e-29


>CDD:461075 pfam03849, Tfb2, Transcription factor Tfb2.  
Length=360

 Score = 520 bits (1342),  Expect = 0.0, Method: Composition-based stats.
 Identities = 201/375 (54%), Positives = 251/375 (67%), Gaps = 17/375 (5%)

Query  10   DYLESLPGTVFNKLYQQPSTALAIFRRMLPDLAKCFVMALLYLKDPLPAADLEAWVRPGS  69
            +YLE LP T  ++LYQ P+T LAIFR +LP LAK +VM LLYL+ P+P ADL++WV+P S
Sbjct  1    EYLEKLPPTTLDRLYQSPATCLAIFR-LLPPLAKQYVMRLLYLEQPVPLADLDSWVKPDS  59

Query  70   LKERDNALSILGRLHIMTSTTTSDNIKAYTVTDPFASSLRQALTGAEQTQSFGVLSQISD  129
             KE D AL  L  LHI+   +     +A T+   F  SLR ALTG  +  SF       D
Sbjct  60   KKEHDEALKRLKSLHILQ-ESEPGGGQAITLNPTFKKSLRLALTGGGKHNSFVPSDLPDD  118

Query  130  KEAVSIADLDEYSRRQWEGVLGYMVGTSGLGMQRDVSLSKGVKELLQAGHLVEIR-DRRV  188
            K+AV IA LDEY+R QWE +L YMVG+S  G     ++S+ V +LLQA  L+E      +
Sbjct  119  KKAVDIAFLDEYAREQWEAILHYMVGSSEAGGP--SAISEDVLKLLQASGLMEDESGGSL  176

Query  189  EITQDGFAFALQDVGTQVWHILVLYVESAAAIGMDSVEVLSFVFFLSSLELGKSYEKKQL  248
             IT  GF F LQD   QVW +L+ Y+E A + GMD VEVLSF+F LSSLELGK+Y  + L
Sbjct  177  GITSAGFQFLLQDTNAQVWTLLLQYLELAESRGMDLVEVLSFLFMLSSLELGKAYSTEGL  236

Query  249  TSNQLRTLTDLADFGIVYQETPDAT-HFYPTRLATTLTSDSSTLSNPLAGSLSGPTGTSS  307
            +  Q   L DL DFG+VYQ    +  +FYPTRLATTLTSD+S+               SS
Sbjct  237  SETQRTMLQDLRDFGLVYQRKRKSKRYFYPTRLATTLTSDASS-----------ALRGSS  285

Query  308  SKAGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAVEMGI  367
            S    GFII+ETN+R+YAYTSSPLQI+L++LF  LKYRFPNL+ G+ITR+SVRRA+  GI
Sbjct  286  SSDKEGFIIVETNFRVYAYTSSPLQIALLSLFVRLKYRFPNLVVGQITRESVRRALANGI  345

Query  368  TADQIISYLSTHAHP  382
            TADQIIS+L THAHP
Sbjct  346  TADQIISFLRTHAHP  360


>CDD:465701 pfam18307, Tfb2_C, Transcription factor Tfb2 (p52) C-terminal 
domain.  This is the C-terminal domain of Transcription factor 
Tfb2 present in Saccharomyces cerevisiae. Tfb2 is referred 
to as p52 in humans. The interaction between p8-Tfb5 and 
p52-Tfb2 has a key role in the maintenance of the transcription 
factor TFIIH architecture and TFIIHs function in nucleotide-excision 
repair (NER) pathway. The C-terminal domain of 
Tfb2 is thought to have a crucial role in DNA repair.
Length=68

 Score = 108 bits (271),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 2/68 (3%)

Query  410  DQIRLWQLERDRVKATHGFLFRDFNTLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR--H  467
            DQIRLW+LER+R+KAT G+L+ DF + A+YEA   YA+E+GVL+W+ + KRM  V+   H
Sbjct  1    DQIRLWELERNRIKATPGYLYSDFPSQADYEAVLDYAKELGVLLWEDEEKRMLVVSEEGH  60

Query  468  HQVAAFLK  475
             QV  F+K
Sbjct  61   EQVKEFIK  68



Lambda      K        H        a         alpha
   0.320    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00034630

Length=699
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461444 pfam04821, TIMELESS, Timeless protein. The timeless ge...  231     3e-71


>CDD:461444 pfam04821, TIMELESS, Timeless protein.  The timeless gene in 
Drosophila melanogaster and its homologs in a number of other 
insects and mammals (including human) are involved in circadian 
rhythm control. This family includes a related proteins 
from a number of fungal species.
Length=273

 Score = 231 bits (591),  Expect = 3e-71, Method: Composition-based stats.
 Identities = 81/196 (41%), Positives = 121/196 (62%), Gaps = 15/196 (8%)

Query  1    MTVNHHRHTPYLQQAQVLYKRGILSHGSGSILRTIIRIGLPSMAVPRSERTTRDEGILKL  60
             TVN  RH P LQ+AQ+ YKR IL +    +L+ ++R+ LP +A PR +RT RD GI++L
Sbjct  81   ETVNQRRHYPQLQKAQLGYKRAILDYK---VLKAVVRLLLPPLAKPREDRTERDNGIIEL  137

Query  61   MLYFLRNIAVISP---NARLAAEGDEEETSRSATINAFQNQDAFALLLTMCSNVGEDFSL  117
            +LY +RNI  I P   N + +++G E++   SA I AF  Q    LLLT+ S++G DF  
Sbjct  138  VLYLIRNILAIPPPPENEKRSSDGAEDDILHSAVIWAFHEQGVLDLLLTLASSIGSDFEF  197

Query  118  Q--DVVLLEILFHIVKGVNVEKLF----MNDAQR---KAKRTDELGELLQKESSLRREYA  168
            Q  +V+LLEI++ + KG + E L      ++ +    K +  DEL +LL+KE  ++R  A
Sbjct  198  QQWNVLLLEIIYLLFKGQDPESLASASSPDEERSTSEKKRDGDELSDLLEKEKKMKRAQA  257

Query  169  KNAPTRHGRFGTMIWV  184
            +NA +RH RFG  + V
Sbjct  258  RNASSRHSRFGGTLSV  273



Lambda      K        H        a         alpha
   0.320    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 893722740


Query= TCONS_00034631

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461075 pfam03849, Tfb2, Transcription factor Tfb2                 398     9e-139
CDD:465701 pfam18307, Tfb2_C, Transcription factor Tfb2 (p52) C-t...  107     1e-29 


>CDD:461075 pfam03849, Tfb2, Transcription factor Tfb2.  
Length=360

 Score = 398 bits (1025),  Expect = 9e-139, Method: Composition-based stats.
 Identities = 156/295 (53%), Positives = 194/295 (66%), Gaps = 15/295 (5%)

Query  5    TTSDNIKAYTVTDPFASSLRQALTGAEQTQSFGVLSQISDKEAVSIADLDEYSRRQWEGV  64
            +     +A T+   F  SLR ALTG  +  SF       DK+AV IA LDEY+R QWE +
Sbjct  79   SEPGGGQAITLNPTFKKSLRLALTGGGKHNSFVPSDLPDDKKAVDIAFLDEYAREQWEAI  138

Query  65   LGYMVGTSGLGMQRDVSLSKGVKELLQAGHLVEIR-DRRVEITQDGFAFALQDVGTQVWH  123
            L YMVG+S  G     ++S+ V +LLQA  L+E      + IT  GF F LQD   QVW 
Sbjct  139  LHYMVGSSEAGGP--SAISEDVLKLLQASGLMEDESGGSLGITSAGFQFLLQDTNAQVWT  196

Query  124  ILVLYVESAAAIGMDSVEVLSFVFFLSSLELGKSYEKKQLTSNQLRTLTDLADFGIVYQE  183
            +L+ Y+E A + GMD VEVLSF+F LSSLELGK+Y  + L+  Q   L DL DFG+VYQ 
Sbjct  197  LLLQYLELAESRGMDLVEVLSFLFMLSSLELGKAYSTEGLSETQRTMLQDLRDFGLVYQR  256

Query  184  TPDAT-HFYPTRLATTLTSDSSTLSNPLAGSLSGPTGTSSSKAGSGFIIIETNYRLYAYT  242
               +  +FYPTRLATTLTSD+S+               SSS    GFII+ETN+R+YAYT
Sbjct  257  KRKSKRYFYPTRLATTLTSDASS-----------ALRGSSSSDKEGFIIVETNFRVYAYT  305

Query  243  SSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAVEMGITADQIISYLSTHAHP  297
            SSPLQI+L++LF  LKYRFPNL+ G+ITR+SVRRA+  GITADQIIS+L THAHP
Sbjct  306  SSPLQIALLSLFVRLKYRFPNLVVGQITRESVRRALANGITADQIISFLRTHAHP  360


>CDD:465701 pfam18307, Tfb2_C, Transcription factor Tfb2 (p52) C-terminal 
domain.  This is the C-terminal domain of Transcription factor 
Tfb2 present in Saccharomyces cerevisiae. Tfb2 is referred 
to as p52 in humans. The interaction between p8-Tfb5 and 
p52-Tfb2 has a key role in the maintenance of the transcription 
factor TFIIH architecture and TFIIHs function in nucleotide-excision 
repair (NER) pathway. The C-terminal domain of 
Tfb2 is thought to have a crucial role in DNA repair.
Length=68

 Score = 107 bits (269),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 2/68 (3%)

Query  325  DQIRLWQLERDRVKATHGFLFRDFNTLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR--H  382
            DQIRLW+LER+R+KAT G+L+ DF + A+YEA   YA+E+GVL+W+ + KRM  V+   H
Sbjct  1    DQIRLWELERNRIKATPGYLYSDFPSQADYEAVLDYAKELGVLLWEDEEKRMLVVSEEGH  60

Query  383  HQVAAFLK  390
             QV  F+K
Sbjct  61   EQVKEFIK  68



Lambda      K        H        a         alpha
   0.319    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00029822

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461075 pfam03849, Tfb2, Transcription factor Tfb2                 450     9e-159
CDD:465701 pfam18307, Tfb2_C, Transcription factor Tfb2 (p52) C-t...  107     2e-29 


>CDD:461075 pfam03849, Tfb2, Transcription factor Tfb2.  
Length=360

 Score = 450 bits (1160),  Expect = 9e-159, Method: Composition-based stats.
 Identities = 179/338 (53%), Positives = 223/338 (66%), Gaps = 16/338 (5%)

Query  1    MALLYLKDPLPAADLEAWVRPGSLKERDNALSILGRLHIMTSTTTSDNIKAYTVTDPFAS  60
            M LLYL+ P+P ADL++WV+P S KE D AL  L  LHI+   +     +A T+   F  
Sbjct  37   MRLLYLEQPVPLADLDSWVKPDSKKEHDEALKRLKSLHILQ-ESEPGGGQAITLNPTFKK  95

Query  61   SLRQALTGAEQTQSFGVLSQISDKEAVSIADLDEYSRRQWEGVLGYMVGTSGLGMQRDVS  120
            SLR ALTG  +  SF       DK+AV IA LDEY+R QWE +L YMVG+S  G     +
Sbjct  96   SLRLALTGGGKHNSFVPSDLPDDKKAVDIAFLDEYAREQWEAILHYMVGSSEAGGP--SA  153

Query  121  LSKGVKELLQAGHLVEIR-DRRVEITQDGFAFALQDVGTQVWHILVLYVESAAAIGMDSV  179
            +S+ V +LLQA  L+E      + IT  GF F LQD   QVW +L+ Y+E A + GMD V
Sbjct  154  ISEDVLKLLQASGLMEDESGGSLGITSAGFQFLLQDTNAQVWTLLLQYLELAESRGMDLV  213

Query  180  EVLSFVFFLSSLELGKSYEKKQLTSNQLRTLTDLADFGIVYQETPDAT-HFYPTRLATTL  238
            EVLSF+F LSSLELGK+Y  + L+  Q   L DL DFG+VYQ    +  +FYPTRLATTL
Sbjct  214  EVLSFLFMLSSLELGKAYSTEGLSETQRTMLQDLRDFGLVYQRKRKSKRYFYPTRLATTL  273

Query  239  TSDSSTLSNPLAGSLSGPTGTSSSKAGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKY  298
            TSD+S+               SSS    GFII+ETN+R+YAYTSSPLQI+L++LF  LKY
Sbjct  274  TSDASS-----------ALRGSSSSDKEGFIIVETNFRVYAYTSSPLQIALLSLFVRLKY  322

Query  299  RFPNLITGKITRQSVRRAVEMGITADQIISYLSTHAHP  336
            RFPNL+ G+ITR+SVRRA+  GITADQIIS+L THAHP
Sbjct  323  RFPNLVVGQITRESVRRALANGITADQIISFLRTHAHP  360


>CDD:465701 pfam18307, Tfb2_C, Transcription factor Tfb2 (p52) C-terminal 
domain.  This is the C-terminal domain of Transcription factor 
Tfb2 present in Saccharomyces cerevisiae. Tfb2 is referred 
to as p52 in humans. The interaction between p8-Tfb5 and 
p52-Tfb2 has a key role in the maintenance of the transcription 
factor TFIIH architecture and TFIIHs function in nucleotide-excision 
repair (NER) pathway. The C-terminal domain of 
Tfb2 is thought to have a crucial role in DNA repair.
Length=68

 Score = 107 bits (269),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 2/68 (3%)

Query  364  DQIRLWQLERDRVKATHGFLFRDFNTLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR--H  421
            DQIRLW+LER+R+KAT G+L+ DF + A+YEA   YA+E+GVL+W+ + KRM  V+   H
Sbjct  1    DQIRLWELERNRIKATPGYLYSDFPSQADYEAVLDYAKELGVLLWEDEEKRMLVVSEEGH  60

Query  422  HQVAAFLK  429
             QV  F+K
Sbjct  61   EQVKEFIK  68



Lambda      K        H        a         alpha
   0.319    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00029823

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461075 pfam03849, Tfb2, Transcription factor Tfb2                 398     9e-139
CDD:465701 pfam18307, Tfb2_C, Transcription factor Tfb2 (p52) C-t...  107     1e-29 


>CDD:461075 pfam03849, Tfb2, Transcription factor Tfb2.  
Length=360

 Score = 398 bits (1025),  Expect = 9e-139, Method: Composition-based stats.
 Identities = 156/295 (53%), Positives = 194/295 (66%), Gaps = 15/295 (5%)

Query  5    TTSDNIKAYTVTDPFASSLRQALTGAEQTQSFGVLSQISDKEAVSIADLDEYSRRQWEGV  64
            +     +A T+   F  SLR ALTG  +  SF       DK+AV IA LDEY+R QWE +
Sbjct  79   SEPGGGQAITLNPTFKKSLRLALTGGGKHNSFVPSDLPDDKKAVDIAFLDEYAREQWEAI  138

Query  65   LGYMVGTSGLGMQRDVSLSKGVKELLQAGHLVEIR-DRRVEITQDGFAFALQDVGTQVWH  123
            L YMVG+S  G     ++S+ V +LLQA  L+E      + IT  GF F LQD   QVW 
Sbjct  139  LHYMVGSSEAGGP--SAISEDVLKLLQASGLMEDESGGSLGITSAGFQFLLQDTNAQVWT  196

Query  124  ILVLYVESAAAIGMDSVEVLSFVFFLSSLELGKSYEKKQLTSNQLRTLTDLADFGIVYQE  183
            +L+ Y+E A + GMD VEVLSF+F LSSLELGK+Y  + L+  Q   L DL DFG+VYQ 
Sbjct  197  LLLQYLELAESRGMDLVEVLSFLFMLSSLELGKAYSTEGLSETQRTMLQDLRDFGLVYQR  256

Query  184  TPDAT-HFYPTRLATTLTSDSSTLSNPLAGSLSGPTGTSSSKAGSGFIIIETNYRLYAYT  242
               +  +FYPTRLATTLTSD+S+               SSS    GFII+ETN+R+YAYT
Sbjct  257  KRKSKRYFYPTRLATTLTSDASS-----------ALRGSSSSDKEGFIIVETNFRVYAYT  305

Query  243  SSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAVEMGITADQIISYLSTHAHP  297
            SSPLQI+L++LF  LKYRFPNL+ G+ITR+SVRRA+  GITADQIIS+L THAHP
Sbjct  306  SSPLQIALLSLFVRLKYRFPNLVVGQITRESVRRALANGITADQIISFLRTHAHP  360


>CDD:465701 pfam18307, Tfb2_C, Transcription factor Tfb2 (p52) C-terminal 
domain.  This is the C-terminal domain of Transcription factor 
Tfb2 present in Saccharomyces cerevisiae. Tfb2 is referred 
to as p52 in humans. The interaction between p8-Tfb5 and 
p52-Tfb2 has a key role in the maintenance of the transcription 
factor TFIIH architecture and TFIIHs function in nucleotide-excision 
repair (NER) pathway. The C-terminal domain of 
Tfb2 is thought to have a crucial role in DNA repair.
Length=68

 Score = 107 bits (269),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 2/68 (3%)

Query  325  DQIRLWQLERDRVKATHGFLFRDFNTLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR--H  382
            DQIRLW+LER+R+KAT G+L+ DF + A+YEA   YA+E+GVL+W+ + KRM  V+   H
Sbjct  1    DQIRLWELERNRIKATPGYLYSDFPSQADYEAVLDYAKELGVLLWEDEEKRMLVVSEEGH  60

Query  383  HQVAAFLK  390
             QV  F+K
Sbjct  61   EQVKEFIK  68



Lambda      K        H        a         alpha
   0.319    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00029825

Length=699
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461444 pfam04821, TIMELESS, Timeless protein. The timeless ge...  231     3e-71


>CDD:461444 pfam04821, TIMELESS, Timeless protein.  The timeless gene in 
Drosophila melanogaster and its homologs in a number of other 
insects and mammals (including human) are involved in circadian 
rhythm control. This family includes a related proteins 
from a number of fungal species.
Length=273

 Score = 231 bits (591),  Expect = 3e-71, Method: Composition-based stats.
 Identities = 81/196 (41%), Positives = 121/196 (62%), Gaps = 15/196 (8%)

Query  1    MTVNHHRHTPYLQQAQVLYKRGILSHGSGSILRTIIRIGLPSMAVPRSERTTRDEGILKL  60
             TVN  RH P LQ+AQ+ YKR IL +    +L+ ++R+ LP +A PR +RT RD GI++L
Sbjct  81   ETVNQRRHYPQLQKAQLGYKRAILDYK---VLKAVVRLLLPPLAKPREDRTERDNGIIEL  137

Query  61   MLYFLRNIAVISP---NARLAAEGDEEETSRSATINAFQNQDAFALLLTMCSNVGEDFSL  117
            +LY +RNI  I P   N + +++G E++   SA I AF  Q    LLLT+ S++G DF  
Sbjct  138  VLYLIRNILAIPPPPENEKRSSDGAEDDILHSAVIWAFHEQGVLDLLLTLASSIGSDFEF  197

Query  118  Q--DVVLLEILFHIVKGVNVEKLF----MNDAQR---KAKRTDELGELLQKESSLRREYA  168
            Q  +V+LLEI++ + KG + E L      ++ +    K +  DEL +LL+KE  ++R  A
Sbjct  198  QQWNVLLLEIIYLLFKGQDPESLASASSPDEERSTSEKKRDGDELSDLLEKEKKMKRAQA  257

Query  169  KNAPTRHGRFGTMIWV  184
            +NA +RH RFG  + V
Sbjct  258  RNASSRHSRFGGTLSV  273



Lambda      K        H        a         alpha
   0.320    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 893722740


Query= TCONS_00029826

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397037 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, N...  206     5e-67
CDD:395588 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-t...  151     8e-47


>CDD:397037 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding 
domain.  This family also includes lambda crystallin.
Length=180

 Score = 206 bits (526),  Expect = 5e-67, Method: Composition-based stats.
 Identities = 81/188 (43%), Positives = 113/188 (60%), Gaps = 8/188 (4%)

Query  34   SLGVIGAGQMGLGIALVAASKAQVPVTLIDNTQAALDKGLSFADKLLQKDVSKERLTQEA  93
             + VIGAG MG GIA V A  A + V L+D ++ AL+K L   +  L++ V K R+T+E 
Sbjct  1    KVAVIGAGTMGAGIAQVFAL-AGLEVVLVDISEEALEKALERIESSLERLVEKGRITEEE  59

Query  94   ADAVRARITPSLNMDDLSSVDFVIEAVPEIPDLKTSIFSKLAQIAPKHAILATNTSSIPI  153
             DA  ARI+ + ++      D VIEAVPE  +LK  +F++L  IAP  AILATNTSS+ I
Sbjct  60   VDAALARISFTTDLAAAVDADLVIEAVPENLELKRKLFAELDAIAPPDAILATNTSSLSI  119

Query  154  TKIAAATSTDPTDLQAPSRVISTHFMNPVPVQKGVEIIAGLQTSKETMDTAIAFVQRMGK  213
            T++AAAT         P R I  HF NP P+   VE++ G +TS ET+ T +   +++GK
Sbjct  120  TELAAATKR-------PERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATTVELAKKIGK  172

Query  214  IAAVSADS  221
               V  D+
Sbjct  173  TPVVVKDT  180


>CDD:395588 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal 
domain.  This family also includes lambda crystallin. Some 
proteins include two copies of this domain.
Length=97

 Score = 151 bits (384),  Expect = 8e-47, Method: Composition-based stats.
 Identities = 52/97 (54%), Positives = 69/97 (71%), Gaps = 0/97 (0%)

Query  223  GFLANRILMPYINEAIICLETGVGAREDIDSIMKNGTNVPMGPLTLADFIGLDTCLAIMN  282
            GF+ NR+L PY+NEAI  +E GV   EDID+ M+ G  +PMGP  L+D +GLD    I+ 
Sbjct  1    GFVVNRLLAPYLNEAIRLVEEGVATPEDIDAAMRLGLGLPMGPFELSDLVGLDVGYHILE  60

Query  283  VLHQETGDSKYRPSGLLKRMVDAGWLGKKSGKGFYDY  319
            VL +E GD  YRP  LL+++V+AG LG+K+GKGFY Y
Sbjct  61   VLAEEFGDRAYRPPPLLEKLVEAGRLGRKTGKGFYKY  97



Lambda      K        H        a         alpha
   0.316    0.131    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00029827

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397037 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, N...  197     3e-63
CDD:395588 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-t...  152     6e-47


>CDD:397037 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding 
domain.  This family also includes lambda crystallin.
Length=180

 Score = 197 bits (503),  Expect = 3e-63, Method: Composition-based stats.
 Identities = 81/207 (39%), Positives = 113/207 (55%), Gaps = 27/207 (13%)

Query  34   SLGVIGAGQMVSMLPYCNFLSSQMLSDLQGLGIALVAASKAQVPVTLIDNTQAALDKGLS  93
             + VIGAG M                   G GIA V A  A + V L+D ++ AL+K L 
Sbjct  1    KVAVIGAGTM-------------------GAGIAQVFAL-AGLEVVLVDISEEALEKALE  40

Query  94   FADKLLQKDVSKERLTQEAADAVRARITPSLNMDDLSSVDFVIEAVPEIPDLKTSIFSKL  153
              +  L++ V K R+T+E  DA  ARI+ + ++      D VIEAVPE  +LK  +F++L
Sbjct  41   RIESSLERLVEKGRITEEEVDAALARISFTTDLAAAVDADLVIEAVPENLELKRKLFAEL  100

Query  154  AQIAPKHAILATNTSSIPITKIAAATSTDPTDLQAPSRVISTHFMNPVPVQKGVEIIAGL  213
              IAP  AILATNTSS+ IT++AAAT         P R I  HF NP P+   VE++ G 
Sbjct  101  DAIAPPDAILATNTSSLSITELAAATKR-------PERFIGLHFFNPPPLMPLVEVVRGE  153

Query  214  QTSKETMDTAIAFVQRMGKIAAVSADS  240
            +TS ET+ T +   +++GK   V  D+
Sbjct  154  KTSPETVATTVELAKKIGKTPVVVKDT  180


>CDD:395588 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal 
domain.  This family also includes lambda crystallin. Some 
proteins include two copies of this domain.
Length=97

 Score = 152 bits (386),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 52/97 (54%), Positives = 69/97 (71%), Gaps = 0/97 (0%)

Query  242  GFLANRILMPYINEAIICLETGVGAREDIDSIMKNGTNVPMGPLTLADFIGLDTCLAIMN  301
            GF+ NR+L PY+NEAI  +E GV   EDID+ M+ G  +PMGP  L+D +GLD    I+ 
Sbjct  1    GFVVNRLLAPYLNEAIRLVEEGVATPEDIDAAMRLGLGLPMGPFELSDLVGLDVGYHILE  60

Query  302  VLHQETGDSKYRPSGLLKRMVDAGWLGKKSGKGFYDY  338
            VL +E GD  YRP  LL+++V+AG LG+K+GKGFY Y
Sbjct  61   VLAEEFGDRAYRPPPLLEKLVEAGRLGRKTGKGFYKY  97



Lambda      K        H        a         alpha
   0.317    0.131    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0806    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00029828

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394979 pfam00022, Actin, Actin                                    129     7e-37


>CDD:394979 pfam00022, Actin, Actin.  
Length=407

 Score = 129 bits (326),  Expect = 7e-37, Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 75/167 (45%), Gaps = 54/167 (32%)

Query  6    QYNMVDETYIMNEVKEAVCFVSNNFAGDLEQTWQGNRKRGLTDAAEGITVDYVLPDPNTG  65
             Y    E  ++ E+KE+VC+VS++  GD               ++   T  Y LPD +T 
Sbjct  222  SYKTYQERRVLEEIKESVCYVSDDPFGDETT------------SSSIPTRVYELPDGST-  268

Query  66   KKGFMRPHDPLSNAKKRKSILSGGNAEALSEDVLILGNERFTVPEILFTPSDIGMKQA--  123
                                             +ILG ERF VPEILF PS IG +    
Sbjct  269  ---------------------------------IILGAERFRVPEILFNPSLIGSESELP  295

Query  124  ------GIPDIILQSLSVLPTGLHPSFLANVLVVGGNTLIPGFLERL  164
                  GIP++I+ +++     L PS LAN++V GGN+L PGF ERL
Sbjct  296  PPQTAVGIPELIVDAINACDVDLRPSLLANIVVTGGNSLFPGFTERL  342



Lambda      K        H        a         alpha
   0.317    0.137    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00029829

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460150 pfam01294, Ribosomal_L13e, Ribosomal protein L13e          239     2e-81


>CDD:460150 pfam01294, Ribosomal_L13e, Ribosomal protein L13e.  
Length=180

 Score = 239 bits (612),  Expect = 2e-81, Method: Composition-based stats.
 Identities = 109/195 (56%), Positives = 133/195 (68%), Gaps = 15/195 (8%)

Query  8    QLQKHHFHKDWQRRVRVHFDQPGRKHRRREARLAKAAAVAPRPVDKLRPVVRCPTVKYNR  67
             +  +HF KDWQRRV+  F+QPGRK RRR AR AKAAA+APRPV+ LRPVVRCPTV+YN 
Sbjct  1    VIPNNHFRKDWQRRVKTWFNQPGRKKRRRLARQAKAAAIAPRPVELLRPVVRCPTVRYNT  60

Query  68   RVRVGRGFTLAELKEAGIPKKLARTVGIAVDHRRVNYSKESLVANVARLKDYKARLILFP  127
            +VR GRGFTL ELK AGI KK ART+GIAVDHRR N S+ESL ANV RLK+YK++LILFP
Sbjct  61   KVRAGRGFTLEELKAAGINKKYARTIGIAVDHRRRNRSEESLQANVQRLKEYKSKLILFP  120

Query  128  RKSGQFKKLDSSADEVNAAKAAFAAEGKTEGYATKLGATFPVKNISAAEAVTEVKRDELP  187
            RK+ + KK DSSA+E+ AA                  A  P+      E    +  +E  
Sbjct  121  RKAKKPKKGDSSAEELKAATQL------------SGAAVMPIVQTKKKEKARAITEEE--  166

Query  188  KGEEAAYRRLREARS  202
              + +AYR LR+AR+
Sbjct  167  -KKFSAYRTLRKARA  180



Lambda      K        H        a         alpha
   0.317    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00029830

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460150 pfam01294, Ribosomal_L13e, Ribosomal protein L13e          239     2e-81


>CDD:460150 pfam01294, Ribosomal_L13e, Ribosomal protein L13e.  
Length=180

 Score = 239 bits (612),  Expect = 2e-81, Method: Composition-based stats.
 Identities = 109/195 (56%), Positives = 133/195 (68%), Gaps = 15/195 (8%)

Query  8    QLQKHHFHKDWQRRVRVHFDQPGRKHRRREARLAKAAAVAPRPVDKLRPVVRCPTVKYNR  67
             +  +HF KDWQRRV+  F+QPGRK RRR AR AKAAA+APRPV+ LRPVVRCPTV+YN 
Sbjct  1    VIPNNHFRKDWQRRVKTWFNQPGRKKRRRLARQAKAAAIAPRPVELLRPVVRCPTVRYNT  60

Query  68   RVRVGRGFTLAELKEAGIPKKLARTVGIAVDHRRVNYSKESLVANVARLKDYKARLILFP  127
            +VR GRGFTL ELK AGI KK ART+GIAVDHRR N S+ESL ANV RLK+YK++LILFP
Sbjct  61   KVRAGRGFTLEELKAAGINKKYARTIGIAVDHRRRNRSEESLQANVQRLKEYKSKLILFP  120

Query  128  RKSGQFKKLDSSADEVNAAKAAFAAEGKTEGYATKLGATFPVKNISAAEAVTEVKRDELP  187
            RK+ + KK DSSA+E+ AA                  A  P+      E    +  +E  
Sbjct  121  RKAKKPKKGDSSAEELKAATQL------------SGAAVMPIVQTKKKEKARAITEEE--  166

Query  188  KGEEAAYRRLREARS  202
              + +AYR LR+AR+
Sbjct  167  -KKFSAYRTLRKARA  180



Lambda      K        H        a         alpha
   0.317    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00029832

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460150 pfam01294, Ribosomal_L13e, Ribosomal protein L13e          239     2e-81


>CDD:460150 pfam01294, Ribosomal_L13e, Ribosomal protein L13e.  
Length=180

 Score = 239 bits (612),  Expect = 2e-81, Method: Composition-based stats.
 Identities = 109/195 (56%), Positives = 133/195 (68%), Gaps = 15/195 (8%)

Query  8    QLQKHHFHKDWQRRVRVHFDQPGRKHRRREARLAKAAAVAPRPVDKLRPVVRCPTVKYNR  67
             +  +HF KDWQRRV+  F+QPGRK RRR AR AKAAA+APRPV+ LRPVVRCPTV+YN 
Sbjct  1    VIPNNHFRKDWQRRVKTWFNQPGRKKRRRLARQAKAAAIAPRPVELLRPVVRCPTVRYNT  60

Query  68   RVRVGRGFTLAELKEAGIPKKLARTVGIAVDHRRVNYSKESLVANVARLKDYKARLILFP  127
            +VR GRGFTL ELK AGI KK ART+GIAVDHRR N S+ESL ANV RLK+YK++LILFP
Sbjct  61   KVRAGRGFTLEELKAAGINKKYARTIGIAVDHRRRNRSEESLQANVQRLKEYKSKLILFP  120

Query  128  RKSGQFKKLDSSADEVNAAKAAFAAEGKTEGYATKLGATFPVKNISAAEAVTEVKRDELP  187
            RK+ + KK DSSA+E+ AA                  A  P+      E    +  +E  
Sbjct  121  RKAKKPKKGDSSAEELKAATQL------------SGAAVMPIVQTKKKEKARAITEEE--  166

Query  188  KGEEAAYRRLREARS  202
              + +AYR LR+AR+
Sbjct  167  -KKFSAYRTLRKARA  180



Lambda      K        H        a         alpha
   0.317    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00029833

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460150 pfam01294, Ribosomal_L13e, Ribosomal protein L13e          234     1e-79


>CDD:460150 pfam01294, Ribosomal_L13e, Ribosomal protein L13e.  
Length=180

 Score = 234 bits (599),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 108/189 (57%), Positives = 130/189 (69%), Gaps = 15/189 (8%)

Query  14   FHKDWQRRVRVHFDQPGRKHRRREARLAKAAAVAPRPVDKLRPVVRCPTVKYNRRVRVGR  73
            F KDWQRRV+  F+QPGRK RRR AR AKAAA+APRPV+ LRPVVRCPTV+YN +VR GR
Sbjct  7    FRKDWQRRVKTWFNQPGRKKRRRLARQAKAAAIAPRPVELLRPVVRCPTVRYNTKVRAGR  66

Query  74   GFTLAELKEAGIPKKLARTVGIAVDHRRVNYSKESLVANVARLKDYKARLILFPRKSGQF  133
            GFTL ELK AGI KK ART+GIAVDHRR N S+ESL ANV RLK+YK++LILFPRK+ + 
Sbjct  67   GFTLEELKAAGINKKYARTIGIAVDHRRRNRSEESLQANVQRLKEYKSKLILFPRKAKKP  126

Query  134  KKLDSSADEVNAAKAAFAAEGKTEGYATKLGATFPVKNISAAEAVTEVKRDELPKGEEAA  193
            KK DSSA+E+ AA                  A  P+      E    +  +E    + +A
Sbjct  127  KKGDSSAEELKAATQL------------SGAAVMPIVQTKKKEKARAITEEE---KKFSA  171

Query  194  YRRLREARS  202
            YR LR+AR+
Sbjct  172  YRTLRKARA  180



Lambda      K        H        a         alpha
   0.318    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00029834

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460150 pfam01294, Ribosomal_L13e, Ribosomal protein L13e          230     5e-78


>CDD:460150 pfam01294, Ribosomal_L13e, Ribosomal protein L13e.  
Length=180

 Score = 230 bits (589),  Expect = 5e-78, Method: Composition-based stats.
 Identities = 107/189 (57%), Positives = 129/189 (68%), Gaps = 15/189 (8%)

Query  14   FHKDWQRRVRVHFDQVGRKHRRREARLAKAAAVAPRPVDKLRPVVRCPTVKYNRRVRVGR  73
            F KDWQRRV+  F+Q GRK RRR AR AKAAA+APRPV+ LRPVVRCPTV+YN +VR GR
Sbjct  7    FRKDWQRRVKTWFNQPGRKKRRRLARQAKAAAIAPRPVELLRPVVRCPTVRYNTKVRAGR  66

Query  74   GFTLAELKEAGIPKKLARTVGIAVDHRRVNYSKESLVANVARLKDYKARLILFPRKSGQF  133
            GFTL ELK AGI KK ART+GIAVDHRR N S+ESL ANV RLK+YK++LILFPRK+ + 
Sbjct  67   GFTLEELKAAGINKKYARTIGIAVDHRRRNRSEESLQANVQRLKEYKSKLILFPRKAKKP  126

Query  134  KKLDSSADEVNAAKAAFAAEGKTEGYATKLGATFPVKNISAAEAVTEVKRDELPKGEEAA  193
            KK DSSA+E+ AA                  A  P+      E    +  +E    + +A
Sbjct  127  KKGDSSAEELKAATQL------------SGAAVMPIVQTKKKEKARAITEEE---KKFSA  171

Query  194  YRRLREARS  202
            YR LR+AR+
Sbjct  172  YRTLRKARA  180



Lambda      K        H        a         alpha
   0.318    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00029835

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462904 pfam09791, Oxidored-like, Oxidoreductase-like protein,...  99.2    1e-27


>CDD:462904 pfam09791, Oxidored-like, Oxidoreductase-like protein, N-terminal. 
 Members of this family are found in the N terminal region 
of various oxidoreductase like proteins. Their exact function 
is, as yet, unknown.
Length=45

 Score = 99.2 bits (248),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 30/45 (67%), Positives = 39/45 (87%), Gaps = 0/45 (0%)

Query  149  INGVAIPPRPEEPDNCCMSGCVHCVWDDYRDEMEEWASRVEKAKA  193
            I GV +PP+PEEPDNCCMSGCV+CVWD YR+++EEWA   ++A+A
Sbjct  1    IAGVLVPPKPEEPDNCCMSGCVNCVWDLYREDLEEWAEARKEARA  45



Lambda      K        H        a         alpha
   0.313    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00029843

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462904 pfam09791, Oxidored-like, Oxidoreductase-like protein,...  99.2    1e-27


>CDD:462904 pfam09791, Oxidored-like, Oxidoreductase-like protein, N-terminal. 
 Members of this family are found in the N terminal region 
of various oxidoreductase like proteins. Their exact function 
is, as yet, unknown.
Length=45

 Score = 99.2 bits (248),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 30/45 (67%), Positives = 39/45 (87%), Gaps = 0/45 (0%)

Query  149  INGVAIPPRPEEPDNCCMSGCVHCVWDDYRDEMEEWASRVEKAKA  193
            I GV +PP+PEEPDNCCMSGCV+CVWD YR+++EEWA   ++A+A
Sbjct  1    IAGVLVPPKPEEPDNCCMSGCVNCVWDLYREDLEEWAEARKEARA  45



Lambda      K        H        a         alpha
   0.313    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00029840

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462904 pfam09791, Oxidored-like, Oxidoreductase-like protein,...  99.2    1e-27


>CDD:462904 pfam09791, Oxidored-like, Oxidoreductase-like protein, N-terminal. 
 Members of this family are found in the N terminal region 
of various oxidoreductase like proteins. Their exact function 
is, as yet, unknown.
Length=45

 Score = 99.2 bits (248),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 30/45 (67%), Positives = 39/45 (87%), Gaps = 0/45 (0%)

Query  149  INGVAIPPRPEEPDNCCMSGCVHCVWDDYRDEMEEWASRVEKAKA  193
            I GV +PP+PEEPDNCCMSGCV+CVWD YR+++EEWA   ++A+A
Sbjct  1    IAGVLVPPKPEEPDNCCMSGCVNCVWDLYREDLEEWAEARKEARA  45



Lambda      K        H        a         alpha
   0.313    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00029837

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00029839

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00029838

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00029842

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00034632

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00029841

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00029844

Length=246


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00029846

Length=246


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00029845

Length=246


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00034633

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.549    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00034634

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.549    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00034635

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  152     5e-44


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 152 bits (386),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 63/206 (31%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query  98   RWSTQTFTIAQMTPIWIFPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTIQGIGLLVT  157
               T+   +  MTP W+ P  P++++     +L+A L     LPI++    + G+GL + 
Sbjct  125  LLFTRHHLLEAMTPAWLLPVVPLMVVAALGALLAALL-----LPILVVSYLLWGLGLFLA  179

Query  158  LTVYSAYVYRLFSQKLPRENLRPGMFVSVGPSAFTVSGLVTMAAHAKRCFPDDFMGNGAL  217
            L + + Y+YRLF+  LP   LRP +F+ +GP       L+ +   A    P       AL
Sbjct  180  LVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILPALT----AL  235

Query  218  AANILEVVVNFACLWLWGLAIFFFFIATFAHWSTIGPGRMNFSMAWFSFVFPNTALITAT  277
            A  IL VV     L+LWG  +++FFIA  +  S +  G + F++ W++F FP  A   AT
Sbjct  236  AGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTFPLGAFALAT  295

Query  278  FAIGNAFSCKPILIIGCAMIFPLILM  303
              +G A       ++G  +   L+L+
Sbjct  296  IELGKALDSPFFRVLGTILSVLLVLV  321



Lambda      K        H        a         alpha
   0.331    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00029847

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  151     8e-44


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 151 bits (384),  Expect = 8e-44, Method: Composition-based stats.
 Identities = 63/206 (31%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query  98   RWSTQTFTIAQMTPIWIFPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTIQGIGLLVT  157
               T+   +  MTP W+ P  P++++     +L+A L     LPI++    + G+GL + 
Sbjct  125  LLFTRHHLLEAMTPAWLLPVVPLMVVAALGALLAALL-----LPILVVSYLLWGLGLFLA  179

Query  158  LTVYSAYVYRLFSQKLPRENLRPGMFVSVGPSAFTVSGLVTMAAHAKRCFPDDFMGNGAL  217
            L + + Y+YRLF+  LP   LRP +F+ +GP       L+ +   A    P       AL
Sbjct  180  LVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILPALT----AL  235

Query  218  AANILEVVVNFACLWLWGLAIFFFFIATFAHWSTIGPGRMNFSMAWFSFVFPNTALITAT  277
            A  IL VV     L+LWG  +++FFIA  +  S +  G + F++ W++F FP  A   AT
Sbjct  236  AGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTFPLGAFALAT  295

Query  278  FAIGNAFSCKPILIIGCAMIFPLILM  303
              +G A       ++G  +   L+L+
Sbjct  296  IELGKALDSPFFRVLGTILSVLLVLV  321



Lambda      K        H        a         alpha
   0.331    0.142    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00029848

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  203     6e-64


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 203 bits (519),  Expect = 6e-64, Method: Composition-based stats.
 Identities = 96/266 (36%), Positives = 144/266 (54%), Gaps = 14/266 (5%)

Query  70   HFTWAFFTLSMSTGGIANALYNVPYKFRGLEMIGTIVFLFNIVLYITIWCILLLRFYLYP  129
            HFT A+F + M TGG+A  L+++PY  RGL  IG I+F+ N+VL++ +  + LLRF LYP
Sbjct  1    HFTPAWFAIVMGTGGLALLLHHLPY-GRGLRTIGLILFILNLVLFLLLLLLYLLRFILYP  59

Query  130  YTFKLSLTHPTESLFVPASIVSFGTMLINISQYGPEATGPWLSHAVGVLFW-IDAALAVI  188
               +  L HP ESLF+    + F T++  +        GPWL     VL+W I  ALA+ 
Sbjct  60   EAVRAELRHPVESLFLGTFPMGFATIINGLVLVP--VPGPWLVTLAWVLWWWIGVALALA  117

Query  189  LSAGIYLLLWSTQTFTIAQMTPIWIFPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTI  248
             + G+  LL++     +  MTP W+ P  P++++     +L+A L     LPI++    +
Sbjct  118  FAVGVPFLLFTRHHL-LEAMTPAWLLPVVPLMVVAALGALLAALL-----LPILVVSYLL  171

Query  249  QGIGLLVTLTVYSAYVYRLFSQKLPRENLRPGMFVSVGPSAFTVSGLVTMAAHAKRCFPD  308
             G+GL + L + + Y+YRLF+  LP   LRP +F+ +GP       L+ +   A    P 
Sbjct  172  WGLGLFLALVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILPA  231

Query  309  DFMGNGALAANILEVVVNFACLWLWG  334
                  ALA  IL VV     L+LWG
Sbjct  232  LT----ALAGEILYVVALLLALFLWG  253



Lambda      K        H        a         alpha
   0.326    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00034636

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  152     5e-44


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 152 bits (386),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 63/206 (31%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query  98   RWSTQTFTIAQMTPIWIFPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTIQGIGLLVT  157
               T+   +  MTP W+ P  P++++     +L+A L     LPI++    + G+GL + 
Sbjct  125  LLFTRHHLLEAMTPAWLLPVVPLMVVAALGALLAALL-----LPILVVSYLLWGLGLFLA  179

Query  158  LTVYSAYVYRLFSQKLPRENLRPGMFVSVGPSAFTVSGLVTMAAHAKRCFPDDFMGNGAL  217
            L + + Y+YRLF+  LP   LRP +F+ +GP       L+ +   A    P       AL
Sbjct  180  LVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILPALT----AL  235

Query  218  AANILEVVVNFACLWLWGLAIFFFFIATFAHWSTIGPGRMNFSMAWFSFVFPNTALITAT  277
            A  IL VV     L+LWG  +++FFIA  +  S +  G + F++ W++F FP  A   AT
Sbjct  236  AGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTFPLGAFALAT  295

Query  278  FAIGNAFSCKPILIIGCAMIFPLILM  303
              +G A       ++G  +   L+L+
Sbjct  296  IELGKALDSPFFRVLGTILSVLLVLV  321



Lambda      K        H        a         alpha
   0.331    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00029849

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  152     5e-44


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 152 bits (386),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 63/206 (31%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query  98   RWSTQTFTIAQMTPIWIFPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTIQGIGLLVT  157
               T+   +  MTP W+ P  P++++     +L+A L     LPI++    + G+GL + 
Sbjct  125  LLFTRHHLLEAMTPAWLLPVVPLMVVAALGALLAALL-----LPILVVSYLLWGLGLFLA  179

Query  158  LTVYSAYVYRLFSQKLPRENLRPGMFVSVGPSAFTVSGLVTMAAHAKRCFPDDFMGNGAL  217
            L + + Y+YRLF+  LP   LRP +F+ +GP       L+ +   A    P       AL
Sbjct  180  LVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILPALT----AL  235

Query  218  AANILEVVVNFACLWLWGLAIFFFFIATFAHWSTIGPGRMNFSMAWFSFVFPNTALITAT  277
            A  IL VV     L+LWG  +++FFIA  +  S +  G + F++ W++F FP  A   AT
Sbjct  236  AGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTFPLGAFALAT  295

Query  278  FAIGNAFSCKPILIIGCAMIFPLILM  303
              +G A       ++G  +   L+L+
Sbjct  296  IELGKALDSPFFRVLGTILSVLLVLV  321



Lambda      K        H        a         alpha
   0.331    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00029850

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  152     5e-44


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 152 bits (386),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 63/206 (31%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query  98   RWSTQTFTIAQMTPIWIFPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTIQGIGLLVT  157
               T+   +  MTP W+ P  P++++     +L+A L     LPI++    + G+GL + 
Sbjct  125  LLFTRHHLLEAMTPAWLLPVVPLMVVAALGALLAALL-----LPILVVSYLLWGLGLFLA  179

Query  158  LTVYSAYVYRLFSQKLPRENLRPGMFVSVGPSAFTVSGLVTMAAHAKRCFPDDFMGNGAL  217
            L + + Y+YRLF+  LP   LRP +F+ +GP       L+ +   A    P       AL
Sbjct  180  LVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILPALT----AL  235

Query  218  AANILEVVVNFACLWLWGLAIFFFFIATFAHWSTIGPGRMNFSMAWFSFVFPNTALITAT  277
            A  IL VV     L+LWG  +++FFIA  +  S +  G + F++ W++F FP  A   AT
Sbjct  236  AGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTFPLGAFALAT  295

Query  278  FAIGNAFSCKPILIIGCAMIFPLILM  303
              +G A       ++G  +   L+L+
Sbjct  296  IELGKALDSPFFRVLGTILSVLLVLV  321



Lambda      K        H        a         alpha
   0.331    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00034637

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  170     5e-52


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 170 bits (434),  Expect = 5e-52, Method: Composition-based stats.
 Identities = 78/210 (37%), Positives = 120/210 (57%), Gaps = 10/210 (5%)

Query  70   HFTWAFFTLSMSTGGIANALYNVPYKFRGLEMIGTIVFLFNIVLYITIWCILLLRFYLYP  129
            HFT A+F + M TGG+A  L+++PY  RGL  IG I+F+ N+VL++ +  + LLRF LYP
Sbjct  1    HFTPAWFAIVMGTGGLALLLHHLPY-GRGLRTIGLILFILNLVLFLLLLLLYLLRFILYP  59

Query  130  YTFKLSLTHPTESLFVPASIVSFGTMLINISQYGPEATGPWLSHAVGVLFW-IDAALAVI  188
               +  L HP ESLF+    + F T++  +        GPWL     VL+W I  ALA+ 
Sbjct  60   EAVRAELRHPVESLFLGTFPMGFATIINGLVLVP--VPGPWLVTLAWVLWWWIGVALALA  117

Query  189  LSAGIYLLLWSTQTFTIAQMTPIWIFPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTI  248
             + G+  LL++     +  MTP W+ P  P++++     +L+A L     LPI++    +
Sbjct  118  FAVGVPFLLFTRHHL-LEAMTPAWLLPVVPLMVVAALGALLAALL-----LPILVVSYLL  171

Query  249  QGIGLLVTLTVYSAYVYRLFSQKLPRENLR  278
             G+GL + L + + Y+YRLF+  LP   LR
Sbjct  172  WGLGLFLALVILAIYLYRLFTHGLPPAELR  201



Lambda      K        H        a         alpha
   0.325    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00034638

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  152     5e-44


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 152 bits (386),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 63/206 (31%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query  98   RWSTQTFTIAQMTPIWIFPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTIQGIGLLVT  157
               T+   +  MTP W+ P  P++++     +L+A L     LPI++    + G+GL + 
Sbjct  125  LLFTRHHLLEAMTPAWLLPVVPLMVVAALGALLAALL-----LPILVVSYLLWGLGLFLA  179

Query  158  LTVYSAYVYRLFSQKLPRENLRPGMFVSVGPSAFTVSGLVTMAAHAKRCFPDDFMGNGAL  217
            L + + Y+YRLF+  LP   LRP +F+ +GP       L+ +   A    P       AL
Sbjct  180  LVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILPALT----AL  235

Query  218  AANILEVVVNFACLWLWGLAIFFFFIATFAHWSTIGPGRMNFSMAWFSFVFPNTALITAT  277
            A  IL VV     L+LWG  +++FFIA  +  S +  G + F++ W++F FP  A   AT
Sbjct  236  AGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTFPLGAFALAT  295

Query  278  FAIGNAFSCKPILIIGCAMIFPLILM  303
              +G A       ++G  +   L+L+
Sbjct  296  IELGKALDSPFFRVLGTILSVLLVLV  321



Lambda      K        H        a         alpha
   0.331    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00029851

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  152     5e-44


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 152 bits (386),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 63/206 (31%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query  98   RWSTQTFTIAQMTPIWIFPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTIQGIGLLVT  157
               T+   +  MTP W+ P  P++++     +L+A L     LPI++    + G+GL + 
Sbjct  125  LLFTRHHLLEAMTPAWLLPVVPLMVVAALGALLAALL-----LPILVVSYLLWGLGLFLA  179

Query  158  LTVYSAYVYRLFSQKLPRENLRPGMFVSVGPSAFTVSGLVTMAAHAKRCFPDDFMGNGAL  217
            L + + Y+YRLF+  LP   LRP +F+ +GP       L+ +   A    P       AL
Sbjct  180  LVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILPALT----AL  235

Query  218  AANILEVVVNFACLWLWGLAIFFFFIATFAHWSTIGPGRMNFSMAWFSFVFPNTALITAT  277
            A  IL VV     L+LWG  +++FFIA  +  S +  G + F++ W++F FP  A   AT
Sbjct  236  AGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTFPLGAFALAT  295

Query  278  FAIGNAFSCKPILIIGCAMIFPLILM  303
              +G A       ++G  +   L+L+
Sbjct  296  IELGKALDSPFFRVLGTILSVLLVLV  321



Lambda      K        H        a         alpha
   0.331    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00034639

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  152     5e-44


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 152 bits (386),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 63/206 (31%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query  98   RWSTQTFTIAQMTPIWIFPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTIQGIGLLVT  157
               T+   +  MTP W+ P  P++++     +L+A L     LPI++    + G+GL + 
Sbjct  125  LLFTRHHLLEAMTPAWLLPVVPLMVVAALGALLAALL-----LPILVVSYLLWGLGLFLA  179

Query  158  LTVYSAYVYRLFSQKLPRENLRPGMFVSVGPSAFTVSGLVTMAAHAKRCFPDDFMGNGAL  217
            L + + Y+YRLF+  LP   LRP +F+ +GP       L+ +   A    P       AL
Sbjct  180  LVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILPALT----AL  235

Query  218  AANILEVVVNFACLWLWGLAIFFFFIATFAHWSTIGPGRMNFSMAWFSFVFPNTALITAT  277
            A  IL VV     L+LWG  +++FFIA  +  S +  G + F++ W++F FP  A   AT
Sbjct  236  AGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTFPLGAFALAT  295

Query  278  FAIGNAFSCKPILIIGCAMIFPLILM  303
              +G A       ++G  +   L+L+
Sbjct  296  IELGKALDSPFFRVLGTILSVLLVLV  321



Lambda      K        H        a         alpha
   0.331    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00029852

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  152     5e-44


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 152 bits (386),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 63/206 (31%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query  98   RWSTQTFTIAQMTPIWIFPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTIQGIGLLVT  157
               T+   +  MTP W+ P  P++++     +L+A L     LPI++    + G+GL + 
Sbjct  125  LLFTRHHLLEAMTPAWLLPVVPLMVVAALGALLAALL-----LPILVVSYLLWGLGLFLA  179

Query  158  LTVYSAYVYRLFSQKLPRENLRPGMFVSVGPSAFTVSGLVTMAAHAKRCFPDDFMGNGAL  217
            L + + Y+YRLF+  LP   LRP +F+ +GP       L+ +   A    P       AL
Sbjct  180  LVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILPALT----AL  235

Query  218  AANILEVVVNFACLWLWGLAIFFFFIATFAHWSTIGPGRMNFSMAWFSFVFPNTALITAT  277
            A  IL VV     L+LWG  +++FFIA  +  S +  G + F++ W++F FP  A   AT
Sbjct  236  AGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTFPLGAFALAT  295

Query  278  FAIGNAFSCKPILIIGCAMIFPLILM  303
              +G A       ++G  +   L+L+
Sbjct  296  IELGKALDSPFFRVLGTILSVLLVLV  321



Lambda      K        H        a         alpha
   0.331    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00029853

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  151     8e-44


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 151 bits (384),  Expect = 8e-44, Method: Composition-based stats.
 Identities = 63/206 (31%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query  98   RWSTQTFTIAQMTPIWIFPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTIQGIGLLVT  157
               T+   +  MTP W+ P  P++++     +L+A L     LPI++    + G+GL + 
Sbjct  125  LLFTRHHLLEAMTPAWLLPVVPLMVVAALGALLAALL-----LPILVVSYLLWGLGLFLA  179

Query  158  LTVYSAYVYRLFSQKLPRENLRPGMFVSVGPSAFTVSGLVTMAAHAKRCFPDDFMGNGAL  217
            L + + Y+YRLF+  LP   LRP +F+ +GP       L+ +   A    P       AL
Sbjct  180  LVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILPALT----AL  235

Query  218  AANILEVVVNFACLWLWGLAIFFFFIATFAHWSTIGPGRMNFSMAWFSFVFPNTALITAT  277
            A  IL VV     L+LWG  +++FFIA  +  S +  G + F++ W++F FP  A   AT
Sbjct  236  AGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTFPLGAFALAT  295

Query  278  FAIGNAFSCKPILIIGCAMIFPLILM  303
              +G A       ++G  +   L+L+
Sbjct  296  IELGKALDSPFFRVLGTILSVLLVLV  321



Lambda      K        H        a         alpha
   0.331    0.142    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00029854

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  203     6e-64


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 203 bits (519),  Expect = 6e-64, Method: Composition-based stats.
 Identities = 96/266 (36%), Positives = 144/266 (54%), Gaps = 14/266 (5%)

Query  70   HFTWAFFTLSMSTGGIANALYNVPYKFRGLEMIGTIVFLFNIVLYITIWCILLLRFYLYP  129
            HFT A+F + M TGG+A  L+++PY  RGL  IG I+F+ N+VL++ +  + LLRF LYP
Sbjct  1    HFTPAWFAIVMGTGGLALLLHHLPY-GRGLRTIGLILFILNLVLFLLLLLLYLLRFILYP  59

Query  130  YTFKLSLTHPTESLFVPASIVSFGTMLINISQYGPEATGPWLSHAVGVLFW-IDAALAVI  188
               +  L HP ESLF+    + F T++  +        GPWL     VL+W I  ALA+ 
Sbjct  60   EAVRAELRHPVESLFLGTFPMGFATIINGLVLVP--VPGPWLVTLAWVLWWWIGVALALA  117

Query  189  LSAGIYLLLWSTQTFTIAQMTPIWIFPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTI  248
             + G+  LL++     +  MTP W+ P  P++++     +L+A L     LPI++    +
Sbjct  118  FAVGVPFLLFTRHHL-LEAMTPAWLLPVVPLMVVAALGALLAALL-----LPILVVSYLL  171

Query  249  QGIGLLVTLTVYSAYVYRLFSQKLPRENLRPGMFVSVGPSAFTVSGLVTMAAHAKRCFPD  308
             G+GL + L + + Y+YRLF+  LP   LRP +F+ +GP       L+ +   A    P 
Sbjct  172  WGLGLFLALVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILPA  231

Query  309  DFMGNGALAANILEVVVNFACLWLWG  334
                  ALA  IL VV     L+LWG
Sbjct  232  LT----ALAGEILYVVALLLALFLWG  253



Lambda      K        H        a         alpha
   0.326    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00034640

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  152     5e-44


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 152 bits (386),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 63/206 (31%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query  98   RWSTQTFTIAQMTPIWIFPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTIQGIGLLVT  157
               T+   +  MTP W+ P  P++++     +L+A L     LPI++    + G+GL + 
Sbjct  125  LLFTRHHLLEAMTPAWLLPVVPLMVVAALGALLAALL-----LPILVVSYLLWGLGLFLA  179

Query  158  LTVYSAYVYRLFSQKLPRENLRPGMFVSVGPSAFTVSGLVTMAAHAKRCFPDDFMGNGAL  217
            L + + Y+YRLF+  LP   LRP +F+ +GP       L+ +   A    P       AL
Sbjct  180  LVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILPALT----AL  235

Query  218  AANILEVVVNFACLWLWGLAIFFFFIATFAHWSTIGPGRMNFSMAWFSFVFPNTALITAT  277
            A  IL VV     L+LWG  +++FFIA  +  S +  G + F++ W++F FP  A   AT
Sbjct  236  AGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTFPLGAFALAT  295

Query  278  FAIGNAFSCKPILIIGCAMIFPLILM  303
              +G A       ++G  +   L+L+
Sbjct  296  IELGKALDSPFFRVLGTILSVLLVLV  321



Lambda      K        H        a         alpha
   0.331    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00029855

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  152     5e-44


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 152 bits (386),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 63/206 (31%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query  98   RWSTQTFTIAQMTPIWIFPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTIQGIGLLVT  157
               T+   +  MTP W+ P  P++++     +L+A L     LPI++    + G+GL + 
Sbjct  125  LLFTRHHLLEAMTPAWLLPVVPLMVVAALGALLAALL-----LPILVVSYLLWGLGLFLA  179

Query  158  LTVYSAYVYRLFSQKLPRENLRPGMFVSVGPSAFTVSGLVTMAAHAKRCFPDDFMGNGAL  217
            L + + Y+YRLF+  LP   LRP +F+ +GP       L+ +   A    P       AL
Sbjct  180  LVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILPALT----AL  235

Query  218  AANILEVVVNFACLWLWGLAIFFFFIATFAHWSTIGPGRMNFSMAWFSFVFPNTALITAT  277
            A  IL VV     L+LWG  +++FFIA  +  S +  G + F++ W++F FP  A   AT
Sbjct  236  AGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTFPLGAFALAT  295

Query  278  FAIGNAFSCKPILIIGCAMIFPLILM  303
              +G A       ++G  +   L+L+
Sbjct  296  IELGKALDSPFFRVLGTILSVLLVLV  321



Lambda      K        H        a         alpha
   0.331    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00034641

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  152     5e-44


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 152 bits (386),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 63/206 (31%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query  98   RWSTQTFTIAQMTPIWIFPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTIQGIGLLVT  157
               T+   +  MTP W+ P  P++++     +L+A L     LPI++    + G+GL + 
Sbjct  125  LLFTRHHLLEAMTPAWLLPVVPLMVVAALGALLAALL-----LPILVVSYLLWGLGLFLA  179

Query  158  LTVYSAYVYRLFSQKLPRENLRPGMFVSVGPSAFTVSGLVTMAAHAKRCFPDDFMGNGAL  217
            L + + Y+YRLF+  LP   LRP +F+ +GP       L+ +   A    P       AL
Sbjct  180  LVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILPALT----AL  235

Query  218  AANILEVVVNFACLWLWGLAIFFFFIATFAHWSTIGPGRMNFSMAWFSFVFPNTALITAT  277
            A  IL VV     L+LWG  +++FFIA  +  S +  G + F++ W++F FP  A   AT
Sbjct  236  AGEILYVVALLLALFLWGFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTFPLGAFALAT  295

Query  278  FAIGNAFSCKPILIIGCAMIFPLILM  303
              +G A       ++G  +   L+L+
Sbjct  296  IELGKALDSPFFRVLGTILSVLLVLV  321



Lambda      K        H        a         alpha
   0.331    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0783    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00034642

Length=206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  115     1e-31


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 115 bits (289),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 55/136 (40%), Positives = 79/136 (58%), Gaps = 4/136 (3%)

Query  70   HFTWAFFTLSMSTGGIANALYNVPYKFRGLEMIGTIVFLFNIVLYITIWCILLLRFYLYP  129
            HFT A+F + M TGG+A  L+++PY  RGL  IG I+F+ N+VL++ +  + LLRF LYP
Sbjct  1    HFTPAWFAIVMGTGGLALLLHHLPY-GRGLRTIGLILFILNLVLFLLLLLLYLLRFILYP  59

Query  130  YTFKLSLTHPTESLFVPASIVSFGTMLINISQYGPEATGPWLSHAVGVLFW-IDAALAVI  188
               +  L HP ESLF+    + F T++  +        GPWL     VL+W I  ALA+ 
Sbjct  60   EAVRAELRHPVESLFLGTFPMGFATIINGLVLVP--VPGPWLVTLAWVLWWWIGVALALA  117

Query  189  LSAGIYLLLYVTFFLL  204
             + G+  LL+    LL
Sbjct  118  FAVGVPFLLFTRHHLL  133



Lambda      K        H        a         alpha
   0.326    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00034643

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00029856

Length=206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  115     1e-31


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 115 bits (289),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 55/136 (40%), Positives = 79/136 (58%), Gaps = 4/136 (3%)

Query  70   HFTWAFFTLSMSTGGIANALYNVPYKFRGLEMIGTIVFLFNIVLYITIWCILLLRFYLYP  129
            HFT A+F + M TGG+A  L+++PY  RGL  IG I+F+ N+VL++ +  + LLRF LYP
Sbjct  1    HFTPAWFAIVMGTGGLALLLHHLPY-GRGLRTIGLILFILNLVLFLLLLLLYLLRFILYP  59

Query  130  YTFKLSLTHPTESLFVPASIVSFGTMLINISQYGPEATGPWLSHAVGVLFW-IDAALAVI  188
               +  L HP ESLF+    + F T++  +        GPWL     VL+W I  ALA+ 
Sbjct  60   EAVRAELRHPVESLFLGTFPMGFATIINGLVLVP--VPGPWLVTLAWVLWWWIGVALALA  117

Query  189  LSAGIYLLLYVTFFLL  204
             + G+  LL+    LL
Sbjct  118  FAVGVPFLLFTRHHLL  133



Lambda      K        H        a         alpha
   0.326    0.139    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00029857

Length=179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  105     2e-28


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 105 bits (265),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 57/180 (32%), Positives = 86/180 (48%), Gaps = 11/180 (6%)

Query  1    MLINISQYGPEATGPWLSHAVGVLFW-IDAALAVILSAGIYLLLWSTQTFTIAQMTPIWI  59
              I          GPWL     VL+W I  ALA+  + G+  LL++     +  MTP W+
Sbjct  83   ATIINGLVLVPVPGPWLVTLAWVLWWWIGVALALAFAVGVPFLLFTRHHL-LEAMTPAWL  141

Query  60   FPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTIQGIGLLVTLTVYSAYVYRLFSQKLP  119
             P  P++++     +L+A L     LPI++    + G+GL + L + + Y+YRLF+  LP
Sbjct  142  LPVVPLMVVAALGALLAALL-----LPILVVSYLLWGLGLFLALVILAIYLYRLFTHGLP  196

Query  120  RENLRPGMFVSVGPSAFTVSGLVTMAAHAKRCFPDDFMGNGALAANILEVVVNFACLWLW  179
               LRP +F+ +GP       L+ +   A    P       ALA  IL VV     L+LW
Sbjct  197  PAELRPSLFIPLGPPGQGALALLLLGGAAPTILPALT----ALAGEILYVVALLLALFLW  252



Lambda      K        H        a         alpha
   0.327    0.141    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00029858

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  158     7e-47


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 158 bits (401),  Expect = 7e-47, Method: Composition-based stats.
 Identities = 77/249 (31%), Positives = 122/249 (49%), Gaps = 11/249 (4%)

Query  1    MLINISQYGPEATGPWLSHAVGVLFW-IDAALAVILSAGIYLLLWSTQTFTIAQMTPIWI  59
              I          GPWL     VL+W I  ALA+  + G+  LL++     +  MTP W+
Sbjct  83   ATIINGLVLVPVPGPWLVTLAWVLWWWIGVALALAFAVGVPFLLFTRHHL-LEAMTPAWL  141

Query  60   FPAYPMLIIGPHAGILSAKLEPSRALPIIIGGTTIQGIGLLVTLTVYSAYVYRLFSQKLP  119
             P  P++++     +L+A L     LPI++    + G+GL + L + + Y+YRLF+  LP
Sbjct  142  LPVVPLMVVAALGALLAALL-----LPILVVSYLLWGLGLFLALVILAIYLYRLFTHGLP  196

Query  120  RENLRPGMFVSVGPSAFTVSGLVTMAAHAKRCFPDDFMGNGALAANILEVVVNFACLWLW  179
               LRP +F+ +GP       L+ +   A    P       ALA  IL VV     L+LW
Sbjct  197  PAELRPSLFIPLGPPGQGALALLLLGGAAPTILPALT----ALAGEILYVVALLLALFLW  252

Query  180  GLAIFFFFIATFAHWSTIGPGRMNFSMAWFSFVFPNTALITATFAIGNAFSCKPILIIGC  239
            G  +++FFIA  +  S +  G + F++ W++F FP  A   AT  +G A       ++G 
Sbjct  253  GFGLWWFFIAALSVLSALRRGGLPFNLGWWAFTFPLGAFALATIELGKALDSPFFRVLGT  312

Query  240  AMIFPLILM  248
             +   L+L+
Sbjct  313  ILSVLLVLV  321



Lambda      K        H        a         alpha
   0.329    0.142    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00029859

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00029860

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00029861

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00034645

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00029862

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00034646

Length=229


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00034647

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00029864

Length=655


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 828831980


Query= TCONS_00029863

Length=580


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 729280864


Query= TCONS_00034648

Length=629
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427143 pfam03109, ABC1, ABC1 family. This family includes ABC...  138     1e-37


>CDD:427143 pfam03109, ABC1, ABC1 family.  This family includes ABC1 from 
yeast and AarF from E. coli. These proteins have a nuclear 
or mitochondrial subcellular location in eukaryotes. The exact 
molecular functions of these proteins is not clear, however 
yeast ABC1 suppresses a cytochrome b mRNA translation defect 
and is essential for the electron transfer in the bc 1 complex 
and E. coli AarF is required for ubiquinone production. 
It has been suggested that members of the ABC1 family are 
novel chaperonins. These proteins are unrelated to the ABC 
transporter proteins.
Length=245

 Score = 138 bits (349),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 78/245 (32%), Positives = 108/245 (44%), Gaps = 48/245 (20%)

Query  203  SLHSHAPAHSLHQTKKTISKAFNGLPFEEIFEEFYEEPLGVGAIAQVYRAKLKPSLAVMD  262
             L   AP     Q KK I +   G P EEIF EF EEP+   +IAQV+RA+LK       
Sbjct  1    KLQDRAPPFPFEQAKKVIEEEL-GAPVEEIFAEFDEEPIAAASIAQVHRARLKDG-----  54

Query  263  DQALTLEDRSFRGKVRKNVDVLVKSSPRRVPSSYVAIKVLHPKVERVIRRDLRIMSFFAS  322
                                              VA+KV  P V++ IR DL ++ F A 
Sbjct  55   --------------------------------EEVAVKVQRPGVKKRIRSDLLLLRFLAK  82

Query  323  LINAIP----TMHWLSLPDEVQQFGEMMKLQLDLRIEASNLVIFRQKFKSRTTAWFPYPY  378
            +          + WL     V +F + +  +LD   EA+N   FR+ F      + P  Y
Sbjct  83   VAKRFFPGFRRLDWL-----VDEFRKSLPQELDFLREAANAEKFRENFADDPDVYVPKVY  137

Query  379  LEYTTREVLVEEFAQGIPLETFLDV-GGGVYQQEIANEGLDAFLHMLLIDNFVHADLHPG  437
             E TT  VL  E+  GI ++    +   G+ ++EIA   ++ FL  +  D F HAD HPG
Sbjct  138  WELTTERVLTMEYVDGIKIDDLDALSEAGIDRKEIARRLVELFLEQIFRDGFFHADPHPG  197

Query  438  NIMVR  442
            NI+VR
Sbjct  198  NILVR  202



Lambda      K        H        a         alpha
   0.325    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790487440


Query= TCONS_00029865

Length=629
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427143 pfam03109, ABC1, ABC1 family. This family includes ABC...  138     1e-37


>CDD:427143 pfam03109, ABC1, ABC1 family.  This family includes ABC1 from 
yeast and AarF from E. coli. These proteins have a nuclear 
or mitochondrial subcellular location in eukaryotes. The exact 
molecular functions of these proteins is not clear, however 
yeast ABC1 suppresses a cytochrome b mRNA translation defect 
and is essential for the electron transfer in the bc 1 complex 
and E. coli AarF is required for ubiquinone production. 
It has been suggested that members of the ABC1 family are 
novel chaperonins. These proteins are unrelated to the ABC 
transporter proteins.
Length=245

 Score = 138 bits (349),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 78/245 (32%), Positives = 108/245 (44%), Gaps = 48/245 (20%)

Query  203  SLHSHAPAHSLHQTKKTISKAFNGLPFEEIFEEFYEEPLGVGAIAQVYRAKLKPSLAVMD  262
             L   AP     Q KK I +   G P EEIF EF EEP+   +IAQV+RA+LK       
Sbjct  1    KLQDRAPPFPFEQAKKVIEEEL-GAPVEEIFAEFDEEPIAAASIAQVHRARLKDG-----  54

Query  263  DQALTLEDRSFRGKVRKNVDVLVKSSPRRVPSSYVAIKVLHPKVERVIRRDLRIMSFFAS  322
                                              VA+KV  P V++ IR DL ++ F A 
Sbjct  55   --------------------------------EEVAVKVQRPGVKKRIRSDLLLLRFLAK  82

Query  323  LINAIP----TMHWLSLPDEVQQFGEMMKLQLDLRIEASNLVIFRQKFKSRTTAWFPYPY  378
            +          + WL     V +F + +  +LD   EA+N   FR+ F      + P  Y
Sbjct  83   VAKRFFPGFRRLDWL-----VDEFRKSLPQELDFLREAANAEKFRENFADDPDVYVPKVY  137

Query  379  LEYTTREVLVEEFAQGIPLETFLDV-GGGVYQQEIANEGLDAFLHMLLIDNFVHADLHPG  437
             E TT  VL  E+  GI ++    +   G+ ++EIA   ++ FL  +  D F HAD HPG
Sbjct  138  WELTTERVLTMEYVDGIKIDDLDALSEAGIDRKEIARRLVELFLEQIFRDGFFHADPHPG  197

Query  438  NIMVR  442
            NI+VR
Sbjct  198  NILVR  202



Lambda      K        H        a         alpha
   0.325    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790487440


Query= TCONS_00029866

Length=687
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427143 pfam03109, ABC1, ABC1 family. This family includes ABC...  138     1e-37


>CDD:427143 pfam03109, ABC1, ABC1 family.  This family includes ABC1 from 
yeast and AarF from E. coli. These proteins have a nuclear 
or mitochondrial subcellular location in eukaryotes. The exact 
molecular functions of these proteins is not clear, however 
yeast ABC1 suppresses a cytochrome b mRNA translation defect 
and is essential for the electron transfer in the bc 1 complex 
and E. coli AarF is required for ubiquinone production. 
It has been suggested that members of the ABC1 family are 
novel chaperonins. These proteins are unrelated to the ABC 
transporter proteins.
Length=245

 Score = 138 bits (351),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 78/245 (32%), Positives = 108/245 (44%), Gaps = 48/245 (20%)

Query  203  SLHSHAPAHSLHQTKKTISKAFNGLPFEEIFEEFYEEPLGVGAIAQVYRAKLKPSLAVMD  262
             L   AP     Q KK I +   G P EEIF EF EEP+   +IAQV+RA+LK       
Sbjct  1    KLQDRAPPFPFEQAKKVIEEEL-GAPVEEIFAEFDEEPIAAASIAQVHRARLKDG-----  54

Query  263  DQALTLEDRSFRGKVRKNVDVLVKSSPRRVPSSYVAIKVLHPKVERVIRRDLRIMSFFAS  322
                                              VA+KV  P V++ IR DL ++ F A 
Sbjct  55   --------------------------------EEVAVKVQRPGVKKRIRSDLLLLRFLAK  82

Query  323  LINAIP----TMHWLSLPDEVQQFGEMMKLQLDLRIEASNLVIFRQKFKSRTTAWFPYPY  378
            +          + WL     V +F + +  +LD   EA+N   FR+ F      + P  Y
Sbjct  83   VAKRFFPGFRRLDWL-----VDEFRKSLPQELDFLREAANAEKFRENFADDPDVYVPKVY  137

Query  379  LEYTTREVLVEEFAQGIPLETFLDV-GGGVYQQEIANEGLDAFLHMLLIDNFVHADLHPG  437
             E TT  VL  E+  GI ++    +   G+ ++EIA   ++ FL  +  D F HAD HPG
Sbjct  138  WELTTERVLTMEYVDGIKIDDLDALSEAGIDRKEIARRLVELFLEQIFRDGFFHADPHPG  197

Query  438  NIMVR  442
            NI+VR
Sbjct  198  NILVR  202



Lambda      K        H        a         alpha
   0.324    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 876025260


Query= TCONS_00029867

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427143 pfam03109, ABC1, ABC1 family. This family includes ABC...  136     6e-38


>CDD:427143 pfam03109, ABC1, ABC1 family.  This family includes ABC1 from 
yeast and AarF from E. coli. These proteins have a nuclear 
or mitochondrial subcellular location in eukaryotes. The exact 
molecular functions of these proteins is not clear, however 
yeast ABC1 suppresses a cytochrome b mRNA translation defect 
and is essential for the electron transfer in the bc 1 complex 
and E. coli AarF is required for ubiquinone production. 
It has been suggested that members of the ABC1 family are 
novel chaperonins. These proteins are unrelated to the ABC 
transporter proteins.
Length=245

 Score = 136 bits (344),  Expect = 6e-38, Method: Composition-based stats.
 Identities = 78/245 (32%), Positives = 108/245 (44%), Gaps = 48/245 (20%)

Query  7    SLHSHAPAHSLHQTKKTISKAFNGLPFEEIFEEFYEEPLGVGAIAQVYRAKLKPSLAVMD  66
             L   AP     Q KK I +   G P EEIF EF EEP+   +IAQV+RA+LK       
Sbjct  1    KLQDRAPPFPFEQAKKVIEEEL-GAPVEEIFAEFDEEPIAAASIAQVHRARLKDG-----  54

Query  67   DQALTLEDRSFRGKVRKNVDVLVKSSPRRVPSSYVAIKVLHPKVERVIRRDLRIMSFFAS  126
                                              VA+KV  P V++ IR DL ++ F A 
Sbjct  55   --------------------------------EEVAVKVQRPGVKKRIRSDLLLLRFLAK  82

Query  127  LINAIP----TMHWLSLPDEVQQFGEMMKLQLDLRIEASNLVIFRQKFKSRTTAWFPYPY  182
            +          + WL     V +F + +  +LD   EA+N   FR+ F      + P  Y
Sbjct  83   VAKRFFPGFRRLDWL-----VDEFRKSLPQELDFLREAANAEKFRENFADDPDVYVPKVY  137

Query  183  LEYTTREVLVEEFAQGIPLETFLDV-GGGVYQQEIANEGLDAFLHMLLIDNFVHADLHPG  241
             E TT  VL  E+  GI ++    +   G+ ++EIA   ++ FL  +  D F HAD HPG
Sbjct  138  WELTTERVLTMEYVDGIKIDDLDALSEAGIDRKEIARRLVELFLEQIFRDGFFHADPHPG  197

Query  242  NIMVR  246
            NI+VR
Sbjct  198  NILVR  202



Lambda      K        H        a         alpha
   0.323    0.138    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00029868

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00034651

Length=687
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427143 pfam03109, ABC1, ABC1 family. This family includes ABC...  138     1e-37


>CDD:427143 pfam03109, ABC1, ABC1 family.  This family includes ABC1 from 
yeast and AarF from E. coli. These proteins have a nuclear 
or mitochondrial subcellular location in eukaryotes. The exact 
molecular functions of these proteins is not clear, however 
yeast ABC1 suppresses a cytochrome b mRNA translation defect 
and is essential for the electron transfer in the bc 1 complex 
and E. coli AarF is required for ubiquinone production. 
It has been suggested that members of the ABC1 family are 
novel chaperonins. These proteins are unrelated to the ABC 
transporter proteins.
Length=245

 Score = 138 bits (351),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 78/245 (32%), Positives = 108/245 (44%), Gaps = 48/245 (20%)

Query  203  SLHSHAPAHSLHQTKKTISKAFNGLPFEEIFEEFYEEPLGVGAIAQVYRAKLKPSLAVMD  262
             L   AP     Q KK I +   G P EEIF EF EEP+   +IAQV+RA+LK       
Sbjct  1    KLQDRAPPFPFEQAKKVIEEEL-GAPVEEIFAEFDEEPIAAASIAQVHRARLKDG-----  54

Query  263  DQALTLEDRSFRGKVRKNVDVLVKSSPRRVPSSYVAIKVLHPKVERVIRRDLRIMSFFAS  322
                                              VA+KV  P V++ IR DL ++ F A 
Sbjct  55   --------------------------------EEVAVKVQRPGVKKRIRSDLLLLRFLAK  82

Query  323  LINAIP----TMHWLSLPDEVQQFGEMMKLQLDLRIEASNLVIFRQKFKSRTTAWFPYPY  378
            +          + WL     V +F + +  +LD   EA+N   FR+ F      + P  Y
Sbjct  83   VAKRFFPGFRRLDWL-----VDEFRKSLPQELDFLREAANAEKFRENFADDPDVYVPKVY  137

Query  379  LEYTTREVLVEEFAQGIPLETFLDV-GGGVYQQEIANEGLDAFLHMLLIDNFVHADLHPG  437
             E TT  VL  E+  GI ++    +   G+ ++EIA   ++ FL  +  D F HAD HPG
Sbjct  138  WELTTERVLTMEYVDGIKIDDLDALSEAGIDRKEIARRLVELFLEQIFRDGFFHADPHPG  197

Query  438  NIMVR  442
            NI+VR
Sbjct  198  NILVR  202



Lambda      K        H        a         alpha
   0.324    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 876025260


Query= TCONS_00034652

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00034653

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00029869

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00029870

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460065 pfam01103, Bac_surface_Ag, Surface antigen. This entry...  129     5e-35


>CDD:460065 pfam01103, Bac_surface_Ag, Surface antigen.  This entry includes 
the following surface antigens; D15 antigen from H.influenzae, 
OMA87 from P.multocida, OMP85 from N.meningitidis and 
N.gonorrhoeae. The family also includes a number of eukaryotic 
proteins that are members of the UPF0140 family. There also 
appears to be a relationship to pfam03865 (personal obs: 
C Yeats). In eukaryotes, it appears that these proteins are 
not surface antigens; S. cerevisiae YNL026W (SAM50) is an essential 
component of the Sorting and Assembly Machinery (SAM) 
of the mitochondrial outer membrane. The protein was localized 
to the mitochondria.
Length=319

 Score = 129 bits (327),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 86/351 (25%), Positives = 133/351 (38%), Gaps = 44/351 (13%)

Query  64   NVFGGAETLNLNAAMGTRTRSAYQAAFETPILSDPDFRFELGGIAS-----STQKSWANH  118
            N+ G  ++L++NA+ G+   S +  +F  P          LGG        S + S  ++
Sbjct  1    NLLGRGQSLSVNASRGSYETS-FSLSFTDPYFLGDGVS--LGGSLFYNSYDSDRDSSDSY  57

Query  119  EEVLKGGWSKLRWLSQSGHRHEIGYNGFWRQVTGLAENASPTVRADA------GDSVKSS  172
                 G    L           +G    ++    L E+ SP +R         G S+  S
Sbjct  58   RITTYGFSVSLGRPITENWSLSLGLG--YQHNKILDESGSPNIRNYYPSASGTGKSLTFS  115

Query  173  IFHSWVADRRDNPLLPSRGYYAKAFNELAGWGPLKGDVSFWKSEVEAQGAIPIPIPGIKG  232
            + + W  D RD+ L P+RG Y K   E  G   L GDVS++K   +     P     +  
Sbjct  116  LSYGWTYDTRDDGLFPTRGSYLKFNLEFTG-PFLGGDVSYYKLTADGSYYYP-----LGK  169

Query  233  DSGISFTTGFRAGLLYPLGLDSDSRPQLSRINDRFVLGGPTDVRGFRLCGLGPHDGA-DA  291
            D     +     G L   G             +RF  GG   VRGF   G+GP D   DA
Sbjct  170  DDSFVLSARVALGYLDGYGTK------DLPFYERFYAGGSNSVRGFEYGGIGPRDEDGDA  223

Query  292  VGGDVYAAGSANLFLPLPRVGADKPLRLQAFVNGGRLLPLRTLQKEAPTNSTEVKDAMTA  351
            +GG+ Y   S  L  PLP V   + +R   F + G +            N+        +
Sbjct  224  LGGNSYVVASLELRFPLPFVP-KQSVRGVLFFDAGNVW-----------NTG--STDPGS  269

Query  352  TISELGNGLPSVAAGIGLVYAHPVARFELNFSLPLVLRKGEEGRKGLQLGI  402
            +           + G+GL +  P+     +++ PL    G+E +   Q GI
Sbjct  270  SRGARSKAGIRASVGVGLRWLSPLGPLRFDYAFPLKKPDGDETQ-RFQFGI  319



Lambda      K        H        a         alpha
   0.317    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00029871

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460065 pfam01103, Bac_surface_Ag, Surface antigen. This entry...  129     5e-35


>CDD:460065 pfam01103, Bac_surface_Ag, Surface antigen.  This entry includes 
the following surface antigens; D15 antigen from H.influenzae, 
OMA87 from P.multocida, OMP85 from N.meningitidis and 
N.gonorrhoeae. The family also includes a number of eukaryotic 
proteins that are members of the UPF0140 family. There also 
appears to be a relationship to pfam03865 (personal obs: 
C Yeats). In eukaryotes, it appears that these proteins are 
not surface antigens; S. cerevisiae YNL026W (SAM50) is an essential 
component of the Sorting and Assembly Machinery (SAM) 
of the mitochondrial outer membrane. The protein was localized 
to the mitochondria.
Length=319

 Score = 129 bits (327),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 86/351 (25%), Positives = 133/351 (38%), Gaps = 44/351 (13%)

Query  64   NVFGGAETLNLNAAMGTRTRSAYQAAFETPILSDPDFRFELGGIAS-----STQKSWANH  118
            N+ G  ++L++NA+ G+   S +  +F  P          LGG        S + S  ++
Sbjct  1    NLLGRGQSLSVNASRGSYETS-FSLSFTDPYFLGDGVS--LGGSLFYNSYDSDRDSSDSY  57

Query  119  EEVLKGGWSKLRWLSQSGHRHEIGYNGFWRQVTGLAENASPTVRADA------GDSVKSS  172
                 G    L           +G    ++    L E+ SP +R         G S+  S
Sbjct  58   RITTYGFSVSLGRPITENWSLSLGLG--YQHNKILDESGSPNIRNYYPSASGTGKSLTFS  115

Query  173  IFHSWVADRRDNPLLPSRGYYAKAFNELAGWGPLKGDVSFWKSEVEAQGAIPIPIPGIKG  232
            + + W  D RD+ L P+RG Y K   E  G   L GDVS++K   +     P     +  
Sbjct  116  LSYGWTYDTRDDGLFPTRGSYLKFNLEFTG-PFLGGDVSYYKLTADGSYYYP-----LGK  169

Query  233  DSGISFTTGFRAGLLYPLGLDSDSRPQLSRINDRFVLGGPTDVRGFRLCGLGPHDGA-DA  291
            D     +     G L   G             +RF  GG   VRGF   G+GP D   DA
Sbjct  170  DDSFVLSARVALGYLDGYGTK------DLPFYERFYAGGSNSVRGFEYGGIGPRDEDGDA  223

Query  292  VGGDVYAAGSANLFLPLPRVGADKPLRLQAFVNGGRLLPLRTLQKEAPTNSTEVKDAMTA  351
            +GG+ Y   S  L  PLP V   + +R   F + G +            N+        +
Sbjct  224  LGGNSYVVASLELRFPLPFVP-KQSVRGVLFFDAGNVW-----------NTG--STDPGS  269

Query  352  TISELGNGLPSVAAGIGLVYAHPVARFELNFSLPLVLRKGEEGRKGLQLGI  402
            +           + G+GL +  P+     +++ PL    G+E +   Q GI
Sbjct  270  SRGARSKAGIRASVGVGLRWLSPLGPLRFDYAFPLKKPDGDETQ-RFQFGI  319



Lambda      K        H        a         alpha
   0.317    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00034655

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460065 pfam01103, Bac_surface_Ag, Surface antigen. This entry...  129     5e-35


>CDD:460065 pfam01103, Bac_surface_Ag, Surface antigen.  This entry includes 
the following surface antigens; D15 antigen from H.influenzae, 
OMA87 from P.multocida, OMP85 from N.meningitidis and 
N.gonorrhoeae. The family also includes a number of eukaryotic 
proteins that are members of the UPF0140 family. There also 
appears to be a relationship to pfam03865 (personal obs: 
C Yeats). In eukaryotes, it appears that these proteins are 
not surface antigens; S. cerevisiae YNL026W (SAM50) is an essential 
component of the Sorting and Assembly Machinery (SAM) 
of the mitochondrial outer membrane. The protein was localized 
to the mitochondria.
Length=319

 Score = 129 bits (327),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 86/351 (25%), Positives = 133/351 (38%), Gaps = 44/351 (13%)

Query  64   NVFGGAETLNLNAAMGTRTRSAYQAAFETPILSDPDFRFELGGIAS-----STQKSWANH  118
            N+ G  ++L++NA+ G+   S +  +F  P          LGG        S + S  ++
Sbjct  1    NLLGRGQSLSVNASRGSYETS-FSLSFTDPYFLGDGVS--LGGSLFYNSYDSDRDSSDSY  57

Query  119  EEVLKGGWSKLRWLSQSGHRHEIGYNGFWRQVTGLAENASPTVRADA------GDSVKSS  172
                 G    L           +G    ++    L E+ SP +R         G S+  S
Sbjct  58   RITTYGFSVSLGRPITENWSLSLGLG--YQHNKILDESGSPNIRNYYPSASGTGKSLTFS  115

Query  173  IFHSWVADRRDNPLLPSRGYYAKAFNELAGWGPLKGDVSFWKSEVEAQGAIPIPIPGIKG  232
            + + W  D RD+ L P+RG Y K   E  G   L GDVS++K   +     P     +  
Sbjct  116  LSYGWTYDTRDDGLFPTRGSYLKFNLEFTG-PFLGGDVSYYKLTADGSYYYP-----LGK  169

Query  233  DSGISFTTGFRAGLLYPLGLDSDSRPQLSRINDRFVLGGPTDVRGFRLCGLGPHDGA-DA  291
            D     +     G L   G             +RF  GG   VRGF   G+GP D   DA
Sbjct  170  DDSFVLSARVALGYLDGYGTK------DLPFYERFYAGGSNSVRGFEYGGIGPRDEDGDA  223

Query  292  VGGDVYAAGSANLFLPLPRVGADKPLRLQAFVNGGRLLPLRTLQKEAPTNSTEVKDAMTA  351
            +GG+ Y   S  L  PLP V   + +R   F + G +            N+        +
Sbjct  224  LGGNSYVVASLELRFPLPFVP-KQSVRGVLFFDAGNVW-----------NTG--STDPGS  269

Query  352  TISELGNGLPSVAAGIGLVYAHPVARFELNFSLPLVLRKGEEGRKGLQLGI  402
            +           + G+GL +  P+     +++ PL    G+E +   Q GI
Sbjct  270  SRGARSKAGIRASVGVGLRWLSPLGPLRFDYAFPLKKPDGDETQ-RFQFGI  319



Lambda      K        H        a         alpha
   0.317    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00029872

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460065 pfam01103, Bac_surface_Ag, Surface antigen. This entry...  136     1e-36


>CDD:460065 pfam01103, Bac_surface_Ag, Surface antigen.  This entry includes 
the following surface antigens; D15 antigen from H.influenzae, 
OMA87 from P.multocida, OMP85 from N.meningitidis and 
N.gonorrhoeae. The family also includes a number of eukaryotic 
proteins that are members of the UPF0140 family. There also 
appears to be a relationship to pfam03865 (personal obs: 
C Yeats). In eukaryotes, it appears that these proteins are 
not surface antigens; S. cerevisiae YNL026W (SAM50) is an essential 
component of the Sorting and Assembly Machinery (SAM) 
of the mitochondrial outer membrane. The protein was localized 
to the mitochondria.
Length=319

 Score = 136 bits (344),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 88/354 (25%), Positives = 136/354 (38%), Gaps = 50/354 (14%)

Query  201  NVFGGAETLNLNAAMGTRTRSAYQAAFETPILSDPDF---RFELGGIAS-----STQKSW  252
            N+ G  ++L++NA+ G+   S +  +F     +DP F      LGG        S + S 
Sbjct  1    NLLGRGQSLSVNASRGSYETS-FSLSF-----TDPYFLGDGVSLGGSLFYNSYDSDRDSS  54

Query  253  ANHEEVLKGGWSKLRWLSQSGHRHEIGYNGFWRQVTGLAENASPTVRADA------GDSV  306
             ++     G    L           +G    ++    L E+ SP +R         G S+
Sbjct  55   DSYRITTYGFSVSLGRPITENWSLSLGLG--YQHNKILDESGSPNIRNYYPSASGTGKSL  112

Query  307  KSSIFHSWVADRRDNPLLPSRGYYAKAFNELAGWGPLKGDVSFWKSEVEAQGAIPIPIPG  366
              S+ + W  D RD+ L P+RG Y K   E  G   L GDVS++K   +     P     
Sbjct  113  TFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTG-PFLGGDVSYYKLTADGSYYYP-----  166

Query  367  IKGDSGISFTTGFRAGLLYPLGLDSDSRPQLSRINDRFVLGGPTDVRGFRLCGLGPHDGA  426
            +  D     +     G L   G             +RF  GG   VRGF   G+GP D  
Sbjct  167  LGKDDSFVLSARVALGYLDGYGTK------DLPFYERFYAGGSNSVRGFEYGGIGPRDED  220

Query  427  -DAVGGDVYAAGSANLFLPLPRVGADKPLRLQAFVNGGRLLPLRTLQKEAPTNSTEVKDA  485
             DA+GG+ Y   S  L  PLP V   + +R   F + G +            N+      
Sbjct  221  GDALGGNSYVVASLELRFPLPFVP-KQSVRGVLFFDAGNVW-----------NTG--STD  266

Query  486  MTATISELGNGLPSVAAGIGLVYAHPVARFELNFSLPLVLRKGEEGRKGLQLGI  539
              ++           + G+GL +  P+     +++ PL    G+E +   Q GI
Sbjct  267  PGSSRGARSKAGIRASVGVGLRWLSPLGPLRFDYAFPLKKPDGDETQ-RFQFGI  319



Lambda      K        H        a         alpha
   0.317    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00029873

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00029874

Length=549


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682953596


Query= TCONS_00034656

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  167     2e-54
CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily...  56.5    3e-11


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 167 bits (426),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 74/134 (55%), Positives = 92/134 (69%), Gaps = 6/134 (4%)

Query  61   VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI  120
            +LLYGPPGTGKT LA+AVA      FI +SGSELV KY+GE  + +RELF  A++ AP +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  121  IFMDEIDSIGSSRIDSAGSGDSEVQRTMLELLNQLDGFE-PTKNIKIIMATNRLDILDPA  179
            IF+DEID++  SR      GDSE +R + +LL +LDGF      + +I ATNR D LDPA
Sbjct  61   IFIDEIDALAGSR---GSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPA  117

Query  180  LLRPGRIDRKIEFP  193
            LL  GR DR IEFP
Sbjct  118  LL--GRFDRIIEFP  129


>CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily).  This 
Pfam entry includes some of the AAA proteins not detected 
by the pfam00004 model.
Length=135

 Score = 56.5 bits (137),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 58/146 (40%), Gaps = 36/146 (25%)

Query  60   GVLLYGPPGTGKTLLARAVAHHTDCRFIRV-------SGSELVQKYI---GEGSRMVREL  109
            GVLL GPPGTGKT LA  +A     R +         +  +L  +     G  S +   L
Sbjct  1    GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLFGRRNIDPGGASWVDGPL  60

Query  110  FVMAREHAPSIIFMDEIDSIGSSRIDSAGSGDSEVQRTMLELLN-----QLDGFEPTK--  162
               ARE    I  +DEI+             + +V  ++L LL+       DG E  K  
Sbjct  61   VRAARE--GEIAVLDEINRA-----------NPDVLNSLLSLLDERRLLLPDGGELVKAA  107

Query  163  --NIKIIMATNRLDI----LDPALLR  182
                ++I   N LD     L PAL  
Sbjct  108  PDGFRLIATMNPLDRGLNELSPALRS  133



Lambda      K        H        a         alpha
   0.319    0.139    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00034657

Length=71
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  63.8    1e-15


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 63.8 bits (156),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 34/86 (40%), Positives = 42/86 (49%), Gaps = 21/86 (24%)

Query  2    VRELFVMAREHAPSIIFMDEIDSIGSSRIDSAGSGDSEVQRTMLE---------------  46
            +RELF  A++ AP +IF+DEID++  SR     S    V   +L                
Sbjct  46   LRELFEAAKKLAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVI  105

Query  47   ----RLDILDPALLRPGRIDRKIEFP  68
                R D LDPALL  GR DR IEFP
Sbjct  106  AATNRPDKLDPALL--GRFDRIIEFP  129



Lambda      K        H        a         alpha
   0.321    0.140    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0778    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00034658

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  167     2e-54
CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily...  56.5    3e-11


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 167 bits (426),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 74/134 (55%), Positives = 92/134 (69%), Gaps = 6/134 (4%)

Query  61   VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI  120
            +LLYGPPGTGKT LA+AVA      FI +SGSELV KY+GE  + +RELF  A++ AP +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  121  IFMDEIDSIGSSRIDSAGSGDSEVQRTMLELLNQLDGFE-PTKNIKIIMATNRLDILDPA  179
            IF+DEID++  SR      GDSE +R + +LL +LDGF      + +I ATNR D LDPA
Sbjct  61   IFIDEIDALAGSR---GSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPA  117

Query  180  LLRPGRIDRKIEFP  193
            LL  GR DR IEFP
Sbjct  118  LL--GRFDRIIEFP  129


>CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily).  This 
Pfam entry includes some of the AAA proteins not detected 
by the pfam00004 model.
Length=135

 Score = 56.5 bits (137),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 58/146 (40%), Gaps = 36/146 (25%)

Query  60   GVLLYGPPGTGKTLLARAVAHHTDCRFIRV-------SGSELVQKYI---GEGSRMVREL  109
            GVLL GPPGTGKT LA  +A     R +         +  +L  +     G  S +   L
Sbjct  1    GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLFGRRNIDPGGASWVDGPL  60

Query  110  FVMAREHAPSIIFMDEIDSIGSSRIDSAGSGDSEVQRTMLELLN-----QLDGFEPTK--  162
               ARE    I  +DEI+             + +V  ++L LL+       DG E  K  
Sbjct  61   VRAARE--GEIAVLDEINRA-----------NPDVLNSLLSLLDERRLLLPDGGELVKAA  107

Query  163  --NIKIIMATNRLDI----LDPALLR  182
                ++I   N LD     L PAL  
Sbjct  108  PDGFRLIATMNPLDRGLNELSPALRS  133



Lambda      K        H        a         alpha
   0.319    0.139    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00034659

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  167     2e-54
CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily...  56.5    3e-11


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 167 bits (426),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 74/134 (55%), Positives = 92/134 (69%), Gaps = 6/134 (4%)

Query  61   VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI  120
            +LLYGPPGTGKT LA+AVA      FI +SGSELV KY+GE  + +RELF  A++ AP +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  121  IFMDEIDSIGSSRIDSAGSGDSEVQRTMLELLNQLDGFE-PTKNIKIIMATNRLDILDPA  179
            IF+DEID++  SR      GDSE +R + +LL +LDGF      + +I ATNR D LDPA
Sbjct  61   IFIDEIDALAGSR---GSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPA  117

Query  180  LLRPGRIDRKIEFP  193
            LL  GR DR IEFP
Sbjct  118  LL--GRFDRIIEFP  129


>CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily).  This 
Pfam entry includes some of the AAA proteins not detected 
by the pfam00004 model.
Length=135

 Score = 56.5 bits (137),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 58/146 (40%), Gaps = 36/146 (25%)

Query  60   GVLLYGPPGTGKTLLARAVAHHTDCRFIRV-------SGSELVQKYI---GEGSRMVREL  109
            GVLL GPPGTGKT LA  +A     R +         +  +L  +     G  S +   L
Sbjct  1    GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLFGRRNIDPGGASWVDGPL  60

Query  110  FVMAREHAPSIIFMDEIDSIGSSRIDSAGSGDSEVQRTMLELLN-----QLDGFEPTK--  162
               ARE    I  +DEI+             + +V  ++L LL+       DG E  K  
Sbjct  61   VRAARE--GEIAVLDEINRA-----------NPDVLNSLLSLLDERRLLLPDGGELVKAA  107

Query  163  --NIKIIMATNRLDI----LDPALLR  182
                ++I   N LD     L PAL  
Sbjct  108  PDGFRLIATMNPLDRGLNELSPALRS  133



Lambda      K        H        a         alpha
   0.319    0.139    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00029875

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  167     2e-54
CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily...  56.5    3e-11


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 167 bits (426),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 74/134 (55%), Positives = 92/134 (69%), Gaps = 6/134 (4%)

Query  61   VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI  120
            +LLYGPPGTGKT LA+AVA      FI +SGSELV KY+GE  + +RELF  A++ AP +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  121  IFMDEIDSIGSSRIDSAGSGDSEVQRTMLELLNQLDGFE-PTKNIKIIMATNRLDILDPA  179
            IF+DEID++  SR      GDSE +R + +LL +LDGF      + +I ATNR D LDPA
Sbjct  61   IFIDEIDALAGSR---GSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPA  117

Query  180  LLRPGRIDRKIEFP  193
            LL  GR DR IEFP
Sbjct  118  LL--GRFDRIIEFP  129


>CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily).  This 
Pfam entry includes some of the AAA proteins not detected 
by the pfam00004 model.
Length=135

 Score = 56.5 bits (137),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 58/146 (40%), Gaps = 36/146 (25%)

Query  60   GVLLYGPPGTGKTLLARAVAHHTDCRFIRV-------SGSELVQKYI---GEGSRMVREL  109
            GVLL GPPGTGKT LA  +A     R +         +  +L  +     G  S +   L
Sbjct  1    GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLFGRRNIDPGGASWVDGPL  60

Query  110  FVMAREHAPSIIFMDEIDSIGSSRIDSAGSGDSEVQRTMLELLN-----QLDGFEPTK--  162
               ARE    I  +DEI+             + +V  ++L LL+       DG E  K  
Sbjct  61   VRAARE--GEIAVLDEINRA-----------NPDVLNSLLSLLDERRLLLPDGGELVKAA  107

Query  163  --NIKIIMATNRLDI----LDPALLR  182
                ++I   N LD     L PAL  
Sbjct  108  PDGFRLIATMNPLDRGLNELSPALRS  133



Lambda      K        H        a         alpha
   0.319    0.139    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00034661

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  167     2e-54
CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily...  56.5    3e-11


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 167 bits (426),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 74/134 (55%), Positives = 92/134 (69%), Gaps = 6/134 (4%)

Query  61   VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI  120
            +LLYGPPGTGKT LA+AVA      FI +SGSELV KY+GE  + +RELF  A++ AP +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  121  IFMDEIDSIGSSRIDSAGSGDSEVQRTMLELLNQLDGFE-PTKNIKIIMATNRLDILDPA  179
            IF+DEID++  SR      GDSE +R + +LL +LDGF      + +I ATNR D LDPA
Sbjct  61   IFIDEIDALAGSR---GSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPA  117

Query  180  LLRPGRIDRKIEFP  193
            LL  GR DR IEFP
Sbjct  118  LL--GRFDRIIEFP  129


>CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily).  This 
Pfam entry includes some of the AAA proteins not detected 
by the pfam00004 model.
Length=135

 Score = 56.5 bits (137),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 58/146 (40%), Gaps = 36/146 (25%)

Query  60   GVLLYGPPGTGKTLLARAVAHHTDCRFIRV-------SGSELVQKYI---GEGSRMVREL  109
            GVLL GPPGTGKT LA  +A     R +         +  +L  +     G  S +   L
Sbjct  1    GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLFGRRNIDPGGASWVDGPL  60

Query  110  FVMAREHAPSIIFMDEIDSIGSSRIDSAGSGDSEVQRTMLELLN-----QLDGFEPTK--  162
               ARE    I  +DEI+             + +V  ++L LL+       DG E  K  
Sbjct  61   VRAARE--GEIAVLDEINRA-----------NPDVLNSLLSLLDERRLLLPDGGELVKAA  107

Query  163  --NIKIIMATNRLDI----LDPALLR  182
                ++I   N LD     L PAL  
Sbjct  108  PDGFRLIATMNPLDRGLNELSPALRS  133



Lambda      K        H        a         alpha
   0.319    0.139    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00029876

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426979 pfam02782, FGGY_C, FGGY family of carbohydrate kinases...  219     5e-70


>CDD:426979 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal 
domain.  This domain adopts a ribonuclease H-like fold 
and is structurally related to the N-terminal domain.
Length=197

 Score = 219 bits (560),  Expect = 5e-70, Method: Composition-based stats.
 Identities = 84/215 (39%), Positives = 117/215 (54%), Gaps = 20/215 (9%)

Query  192  LAAVAGTSTCHIAMSPNPV-FVPGVWGPYRDTIQPGYWMAEGGQSATGELLKYVIETHPA  250
            LA  AGTS+  +  +P PV  V GVWGPY + + PGYW  EGGQSA G LL ++++ H  
Sbjct  1    LAISAGTSSFVLVETPEPVLSVHGVWGPYTNEMLPGYWGLEGGQSAAGSLLAWLLQFHGL  60

Query  251  FNQAISIAESYNTNIYEYLNEHLKEMAQEQKAPSVSYLGRHVFFYGDLWGNRSPIAEPNM  310
              + +  A                E   E  A +       + FY D  GNR+P A+P  
Sbjct  61   -REELRDAG-------------NVESLAELAALAAVAPAGGLLFYPDFSGNRAPGADPGA  106

Query  311  KGSIIGMANDKTVDGLAIYYYATLEFIALQTRQIVETMNK-AGHSITSIFMSGSQCQNDV  369
            +GSI G+++  T   LA  Y A LE +ALQ RQI+E + K  GH I +I +SG   +N +
Sbjct  107  RGSITGLSSPTT---LAHLYRAILESLALQLRQILEALTKQEGHPIDTIHVSGGGSRNPL  163

Query  370  LVRLIASACDMPVLIPRYIHAAVCHGAAMLGAKAA  404
            L++L+A A  +PV++P     A   GAA+L A AA
Sbjct  164  LLQLLADALGLPVVVPGP-DEATALGAALLAAVAA  197



Lambda      K        H        a         alpha
   0.317    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00029877

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  167     2e-54
CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily...  56.5    3e-11


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 167 bits (426),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 74/134 (55%), Positives = 92/134 (69%), Gaps = 6/134 (4%)

Query  61   VLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI  120
            +LLYGPPGTGKT LA+AVA      FI +SGSELV KY+GE  + +RELF  A++ AP +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  121  IFMDEIDSIGSSRIDSAGSGDSEVQRTMLELLNQLDGFE-PTKNIKIIMATNRLDILDPA  179
            IF+DEID++  SR      GDSE +R + +LL +LDGF      + +I ATNR D LDPA
Sbjct  61   IFIDEIDALAGSR---GSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPA  117

Query  180  LLRPGRIDRKIEFP  193
            LL  GR DR IEFP
Sbjct  118  LL--GRFDRIIEFP  129


>CDD:400191 pfam07728, AAA_5, AAA domain (dynein-related subfamily).  This 
Pfam entry includes some of the AAA proteins not detected 
by the pfam00004 model.
Length=135

 Score = 56.5 bits (137),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 58/146 (40%), Gaps = 36/146 (25%)

Query  60   GVLLYGPPGTGKTLLARAVAHHTDCRFIRV-------SGSELVQKYI---GEGSRMVREL  109
            GVLL GPPGTGKT LA  +A     R +         +  +L  +     G  S +   L
Sbjct  1    GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLFGRRNIDPGGASWVDGPL  60

Query  110  FVMAREHAPSIIFMDEIDSIGSSRIDSAGSGDSEVQRTMLELLN-----QLDGFEPTK--  162
               ARE    I  +DEI+             + +V  ++L LL+       DG E  K  
Sbjct  61   VRAARE--GEIAVLDEINRA-----------NPDVLNSLLSLLDERRLLLPDGGELVKAA  107

Query  163  --NIKIIMATNRLDI----LDPALLR  182
                ++I   N LD     L PAL  
Sbjct  108  PDGFRLIATMNPLDRGLNELSPALRS  133



Lambda      K        H        a         alpha
   0.319    0.139    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00029878

Length=986
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461030 pfam03733, YccF, Inner membrane component domain. Doma...  77.5    2e-18


>CDD:461030 pfam03733, YccF, Inner membrane component domain.  Domain occurs 
as one or more copies in bacterial and eukaryotic proteins. 
These are membrane proteins of four TM regions, two appearing 
in each of the two copies when both are present. Many 
of the latter members also carry the sodium/calcium exchanger 
protein family pfam01699, which have multipass membrane regions.
Length=51

 Score = 77.5 bits (192),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 29/53 (55%), Gaps = 3/53 (6%)

Query  271  LANLLWTAFFGWWLALAALFGAIACFIFAYSPSAVEYGKVFWGLSWYLLYPFG  323
            L N+LW  FFGWWLAL  L   +   I       + YG   + L+ YLL+PFG
Sbjct  1    LGNILWLIFFGWWLALGHLLAGLLLCIT---IIGIPYGLQCFKLAGYLLWPFG  50



Lambda      K        H        a         alpha
   0.319    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1260129640


Query= TCONS_00034662

Length=1117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein....  88.8    5e-21
CDD:461030 pfam03733, YccF, Inner membrane component domain. Doma...  76.0    1e-17


>CDD:426387 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein.  This 
is a family of sodium/calcium exchanger integral membrane proteins. 
This family covers the integral membrane regions of 
the proteins. Sodium/calcium exchangers regulate intracellular 
Ca2+ concentrations in many cells; cardiac myocytes, epithelial 
cells, neurons retinal rod photoreceptors and smooth 
muscle cells. Ca2+ is moved into or out of the cytosol depending 
on Na+ concentration. In humans and rats there are 3 isoforms; 
NCX1 NCX2 and NCX3.
Length=149

 Score = 88.8 bits (221),  Expect = 5e-21, Method: Composition-based stats.
 Identities = 36/157 (23%), Positives = 78/157 (50%), Gaps = 9/157 (6%)

Query  923   KSSIILLVATILYAIIAEILVNTVDVVLESVDIDEKFLGITLFALVPNTTEFLNAISFAM  982
              S ++ ++  +L ++ A++LV++ +V+   + I    LG+T+ AL  +  E +++I  A+
Sbjct  1     LSLLLFILGLLLISVAADLLVDSAEVLARVLGISGTVLGLTILALGTSLPELVSSIIAAL  60

Query  983   NGNIALSMEIGSAYALQVCLLQIPALVLFSALYSRILDPSDLLTHSFNLIFPQWDMVSVI  1042
              G   L++       +   LL +      SAL   +   S LL     +      +V+++
Sbjct  61    RGEPDLALGNVIGSNIFNILLVLG----LSALIGPVKVDSLLLKLDLGV----LLLVALL  112

Query  1043  LCVFLLSYVYGE-GKSNYFKGSILVLTYLVVVIGFYL  1078
             L + LL  +    G+ + F+G +L+L Y+V ++   +
Sbjct  113   LLLLLLLLLLPLFGRLSRFEGLVLLLLYIVYLVFQIV  149


>CDD:461030 pfam03733, YccF, Inner membrane component domain.  Domain occurs 
as one or more copies in bacterial and eukaryotic proteins. 
These are membrane proteins of four TM regions, two appearing 
in each of the two copies when both are present. Many 
of the latter members also carry the sodium/calcium exchanger 
protein family pfam01699, which have multipass membrane regions.
Length=51

 Score = 76.0 bits (188),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 29/53 (55%), Gaps = 3/53 (6%)

Query  271  LANLLWTAFFGWWLALAALFGAIACFIFAYSPSAVEYGKVFWGLSWYLLYPFG  323
            L N+LW  FFGWWLAL  L   +   I       + YG   + L+ YLL+PFG
Sbjct  1    LGNILWLIFFGWWLALGHLLAGLLLCIT---IIGIPYGLQCFKLAGYLLWPFG  50



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1424162760


Query= TCONS_00034663

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00029879

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00034664

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00029880

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00029881

Length=261


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00034665

Length=226


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00029882

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00029883

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00029884

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00029885

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00029910

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  87.9    4e-22


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 87.9 bits (218),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 41/142 (29%), Positives = 61/142 (43%), Gaps = 12/142 (8%)

Query  139  IAIFFVLEDTWHYFSHRALHWGP-LYKAIHKIHHQYSAPFGMAAEYASPIEVMILGFGTV  197
            + +  +L D   Y+ HR LH  P L++  HK+HH   AP  + A    P+E ++      
Sbjct  1    VLLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLFALL--  58

Query  198  GCPILWCALTGDLHIFTMYVWIVLRLFQAIDAHSG--YEFPWSLHHFLPFWAGADHHDLH  255
               +L   L G L +    + ++L     +  HSG  +  PW L   L        H LH
Sbjct  59   --VLLPLLLLG-LPLLAFLLGLLLGTLWYLFIHSGLLFPLPWLLKRLL---GTPRFHRLH  112

Query  256  HEKFV-GNYSSSFRWWDYLLDT  276
            H K    N+  +F  WD L  T
Sbjct  113  HSKNEEYNFGVTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.327    0.138    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00034683

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  81.7    7e-21


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 81.7 bits (202),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 41/142 (29%), Positives = 61/142 (43%), Gaps = 12/142 (8%)

Query  23   IAIFFVLEDTWHYFSHRALHWGP-LYKAIHKIHHQYSAPFGMAAEYASPIEVMILGFGTV  81
            + +  +L D   Y+ HR LH  P L++  HK+HH   AP  + A    P+E ++      
Sbjct  1    VLLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLFALL--  58

Query  82   GCPILWCALTGDLHIFTMYVWIVLRLFQAIDAHSG--YEFPWSLHHFLPFWAGADHHDLH  139
               +L   L G L +    + ++L     +  HSG  +  PW L   L        H LH
Sbjct  59   --VLLPLLLLG-LPLLAFLLGLLLGTLWYLFIHSGLLFPLPWLLKRLL---GTPRFHRLH  112

Query  140  HEKFV-GNYSSSFRWWDYLLDT  160
            H K    N+  +F  WD L  T
Sbjct  113  HSKNEEYNFGVTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.328    0.140    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00029913

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  81.7    7e-21


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 81.7 bits (202),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 41/142 (29%), Positives = 61/142 (43%), Gaps = 12/142 (8%)

Query  23   IAIFFVLEDTWHYFSHRALHWGP-LYKAIHKIHHQYSAPFGMAAEYASPIEVMILGFGTV  81
            + +  +L D   Y+ HR LH  P L++  HK+HH   AP  + A    P+E ++      
Sbjct  1    VLLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLFALL--  58

Query  82   GCPILWCALTGDLHIFTMYVWIVLRLFQAIDAHSG--YEFPWSLHHFLPFWAGADHHDLH  139
               +L   L G L +    + ++L     +  HSG  +  PW L   L        H LH
Sbjct  59   --VLLPLLLLG-LPLLAFLLGLLLGTLWYLFIHSGLLFPLPWLLKRLL---GTPRFHRLH  112

Query  140  HEKFV-GNYSSSFRWWDYLLDT  160
            H K    N+  +F  WD L  T
Sbjct  113  HSKNEEYNFGVTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.328    0.140    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00029911

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  80.2    3e-20


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 80.2 bits (198),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 41/142 (29%), Positives = 61/142 (43%), Gaps = 12/142 (8%)

Query  28   IAIFFVLEDTWHYFSHRALHWGP-LYKAIHKIHHQYSAPFGMAAEYASPIEVMILGFGTV  86
            + +  +L D   Y+ HR LH  P L++  HK+HH   AP  + A    P+E ++      
Sbjct  1    VLLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLFALL--  58

Query  87   GCPILWCALTGDLHIFTMYVWIVLRLFQAIDAHSG--YEFPWSLHHFLPFWAGADHHDLH  144
               +L   L G L +    + ++L     +  HSG  +  PW L   L        H LH
Sbjct  59   --VLLPLLLLG-LPLLAFLLGLLLGTLWYLFIHSGLLFPLPWLLKRLL---GTPRFHRLH  112

Query  145  HEKFV-GNYSSSFRWWDYLLDT  165
            H K    N+  +F  WD L  T
Sbjct  113  HSKNEEYNFGVTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.329    0.141    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00034685

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  81.7    7e-21


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 81.7 bits (202),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 41/142 (29%), Positives = 61/142 (43%), Gaps = 12/142 (8%)

Query  23   IAIFFVLEDTWHYFSHRALHWGP-LYKAIHKIHHQYSAPFGMAAEYASPIEVMILGFGTV  81
            + +  +L D   Y+ HR LH  P L++  HK+HH   AP  + A    P+E ++      
Sbjct  1    VLLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLFALL--  58

Query  82   GCPILWCALTGDLHIFTMYVWIVLRLFQAIDAHSG--YEFPWSLHHFLPFWAGADHHDLH  139
               +L   L G L +    + ++L     +  HSG  +  PW L   L        H LH
Sbjct  59   --VLLPLLLLG-LPLLAFLLGLLLGTLWYLFIHSGLLFPLPWLLKRLL---GTPRFHRLH  112

Query  140  HEKFV-GNYSSSFRWWDYLLDT  160
            H K    N+  +F  WD L  T
Sbjct  113  HSKNEEYNFGVTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.328    0.140    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00034684

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  86.7    1e-21


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 86.7 bits (215),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 41/142 (29%), Positives = 61/142 (43%), Gaps = 12/142 (8%)

Query  139  IAIFFVLEDTWHYFSHRALHWGP-LYKAIHKIHHQYSAPFGMAAEYASPIEVMILGFGTV  197
            + +  +L D   Y+ HR LH  P L++  HK+HH   AP  + A    P+E ++      
Sbjct  1    VLLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLFALL--  58

Query  198  GCPILWCALTGDLHIFTMYVWIVLRLFQAIDAHSG--YEFPWSLHHFLPFWAGADHHDLH  255
               +L   L G L +    + ++L     +  HSG  +  PW L   L        H LH
Sbjct  59   --VLLPLLLLG-LPLLAFLLGLLLGTLWYLFIHSGLLFPLPWLLKRLL---GTPRFHRLH  112

Query  256  HEKFV-GNYSSSFRWWDYLLDT  276
            H K    N+  +F  WD L  T
Sbjct  113  HSKNEEYNFGVTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.327    0.138    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00029912

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00034686

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00034687

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  81.3    2e-20


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 81.3 bits (201),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 41/142 (29%), Positives = 61/142 (43%), Gaps = 12/142 (8%)

Query  50   IAIFFVLEDTWHYFSHRALHWGP-LYKAIHKIHHQYSAPFGMAAEYASPIEVMILGFGTV  108
            + +  +L D   Y+ HR LH  P L++  HK+HH   AP  + A    P+E ++      
Sbjct  1    VLLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLFALL--  58

Query  109  GCPILWCALTGDLHIFTMYVWIVLRLFQAIDAHSG--YEFPWSLHHFLPFWAGADHHDLH  166
               +L   L G L +    + ++L     +  HSG  +  PW L   L        H LH
Sbjct  59   --VLLPLLLLG-LPLLAFLLGLLLGTLWYLFIHSGLLFPLPWLLKRLL---GTPRFHRLH  112

Query  167  HEKFV-GNYSSSFRWWDYLLDT  187
            H K    N+  +F  WD L  T
Sbjct  113  HSKNEEYNFGVTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.329    0.141    0.504    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00034688

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00029914

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase supe...  81.7    7e-21


>CDD:397991 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. 
 This superfamily includes fatty acid and carotene hydroxylases 
and sterol desaturases. Beta-carotene hydroxylase is involved 
in zeaxanthin synthesis by hydroxylating beta-carotene, 
but the enzyme may be involved in other pathways. This family 
includes C-5 sterol desaturase and C-4 sterol methyl oxidase. 
Members of this family are involved in cholesterol biosynthesis 
and biosynthesis a plant cuticular wax. These enzymes 
contain two copies of a HXHH motif. Members of this family 
are integral membrane proteins.
Length=134

 Score = 81.7 bits (202),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 41/142 (29%), Positives = 61/142 (43%), Gaps = 12/142 (8%)

Query  23   IAIFFVLEDTWHYFSHRALHWGP-LYKAIHKIHHQYSAPFGMAAEYASPIEVMILGFGTV  81
            + +  +L D   Y+ HR LH  P L++  HK+HH   AP  + A    P+E ++      
Sbjct  1    VLLGLLLFDFLFYWVHRLLHRLPWLWRRFHKVHHSSEAPNALTALRFHPLEALLFALL--  58

Query  82   GCPILWCALTGDLHIFTMYVWIVLRLFQAIDAHSG--YEFPWSLHHFLPFWAGADHHDLH  139
               +L   L G L +    + ++L     +  HSG  +  PW L   L        H LH
Sbjct  59   --VLLPLLLLG-LPLLAFLLGLLLGTLWYLFIHSGLLFPLPWLLKRLL---GTPRFHRLH  112

Query  140  HEKFV-GNYSSSFRWWDYLLDT  160
            H K    N+  +F  WD L  T
Sbjct  113  HSKNEEYNFGVTFPLWDRLFGT  134



Lambda      K        H        a         alpha
   0.328    0.140    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00034689

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00030012

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein...  226     9e-76


>CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein Ercc1 
(rad10/Swi10).  Ercc1 and XPF (xeroderma pigmentosum group F-complementing 
protein) are two structure-specific endonucleases 
of a class of seven containing an ERCC4 domain. Together 
they form an obligate complex that functions primarily in 
nucleotide excision repair (NER), a versatile pathway able to 
detect and remove a variety of DNA lesions induced by UV light 
and environmental carcinogens, and secondarily in DNA interstrand 
cross-link repair and telomere maintenance. This 
domain in fact binds simultaneously to both XPF and single-stranded 
DNA; this ternary complex explains the important role 
of Ercc1 in targeting its catalytic XPF partner to the NER 
pre-incision complex.
Length=114

 Score = 226 bits (580),  Expect = 9e-76, Method: Composition-based stats.
 Identities = 77/114 (68%), Positives = 94/114 (82%), Gaps = 0/114 (0%)

Query  58   AILVSTRQKGNPILNHIKLLPWEYADIPADYVVGATTCALFLSLKYHRLHPEYIYSRIKA  117
             ILV+ RQKGNP+L HI+ +PWEY DI  DYV+G+TTC LFLSLKYHRLHPEYI++RIK 
Sbjct  1    TILVNPRQKGNPLLKHIRNVPWEYGDIVPDYVIGSTTCVLFLSLKYHRLHPEYIHTRIKK  60

Query  118  LGGKYMLRIILVMVDIENHEDSLKELSKTSIINNYTLMLCWSAPEAAHYLELYK  171
            LG  Y LRI+LV+VD+E+HED+L+EL+K  I+NN TL+L WS  EAA YLE YK
Sbjct  61   LGKSYKLRILLVLVDVEDHEDALRELTKICILNNLTLILAWSFEEAARYLETYK  114



Lambda      K        H        a         alpha
   0.310    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00030008

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein...  226     9e-76


>CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein Ercc1 
(rad10/Swi10).  Ercc1 and XPF (xeroderma pigmentosum group F-complementing 
protein) are two structure-specific endonucleases 
of a class of seven containing an ERCC4 domain. Together 
they form an obligate complex that functions primarily in 
nucleotide excision repair (NER), a versatile pathway able to 
detect and remove a variety of DNA lesions induced by UV light 
and environmental carcinogens, and secondarily in DNA interstrand 
cross-link repair and telomere maintenance. This 
domain in fact binds simultaneously to both XPF and single-stranded 
DNA; this ternary complex explains the important role 
of Ercc1 in targeting its catalytic XPF partner to the NER 
pre-incision complex.
Length=114

 Score = 226 bits (580),  Expect = 9e-76, Method: Composition-based stats.
 Identities = 77/114 (68%), Positives = 94/114 (82%), Gaps = 0/114 (0%)

Query  58   AILVSTRQKGNPILNHIKLLPWEYADIPADYVVGATTCALFLSLKYHRLHPEYIYSRIKA  117
             ILV+ RQKGNP+L HI+ +PWEY DI  DYV+G+TTC LFLSLKYHRLHPEYI++RIK 
Sbjct  1    TILVNPRQKGNPLLKHIRNVPWEYGDIVPDYVIGSTTCVLFLSLKYHRLHPEYIHTRIKK  60

Query  118  LGGKYMLRIILVMVDIENHEDSLKELSKTSIINNYTLMLCWSAPEAAHYLELYK  171
            LG  Y LRI+LV+VD+E+HED+L+EL+K  I+NN TL+L WS  EAA YLE YK
Sbjct  61   LGKSYKLRILLVLVDVEDHEDALRELTKICILNNLTLILAWSFEEAARYLETYK  114



Lambda      K        H        a         alpha
   0.310    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00034739

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein...  226     9e-76


>CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein Ercc1 
(rad10/Swi10).  Ercc1 and XPF (xeroderma pigmentosum group F-complementing 
protein) are two structure-specific endonucleases 
of a class of seven containing an ERCC4 domain. Together 
they form an obligate complex that functions primarily in 
nucleotide excision repair (NER), a versatile pathway able to 
detect and remove a variety of DNA lesions induced by UV light 
and environmental carcinogens, and secondarily in DNA interstrand 
cross-link repair and telomere maintenance. This 
domain in fact binds simultaneously to both XPF and single-stranded 
DNA; this ternary complex explains the important role 
of Ercc1 in targeting its catalytic XPF partner to the NER 
pre-incision complex.
Length=114

 Score = 226 bits (580),  Expect = 9e-76, Method: Composition-based stats.
 Identities = 77/114 (68%), Positives = 94/114 (82%), Gaps = 0/114 (0%)

Query  58   AILVSTRQKGNPILNHIKLLPWEYADIPADYVVGATTCALFLSLKYHRLHPEYIYSRIKA  117
             ILV+ RQKGNP+L HI+ +PWEY DI  DYV+G+TTC LFLSLKYHRLHPEYI++RIK 
Sbjct  1    TILVNPRQKGNPLLKHIRNVPWEYGDIVPDYVIGSTTCVLFLSLKYHRLHPEYIHTRIKK  60

Query  118  LGGKYMLRIILVMVDIENHEDSLKELSKTSIINNYTLMLCWSAPEAAHYLELYK  171
            LG  Y LRI+LV+VD+E+HED+L+EL+K  I+NN TL+L WS  EAA YLE YK
Sbjct  61   LGKSYKLRILLVLVDVEDHEDALRELTKICILNNLTLILAWSFEEAARYLETYK  114



Lambda      K        H        a         alpha
   0.310    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00034740

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein...  226     9e-76


>CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein Ercc1 
(rad10/Swi10).  Ercc1 and XPF (xeroderma pigmentosum group F-complementing 
protein) are two structure-specific endonucleases 
of a class of seven containing an ERCC4 domain. Together 
they form an obligate complex that functions primarily in 
nucleotide excision repair (NER), a versatile pathway able to 
detect and remove a variety of DNA lesions induced by UV light 
and environmental carcinogens, and secondarily in DNA interstrand 
cross-link repair and telomere maintenance. This 
domain in fact binds simultaneously to both XPF and single-stranded 
DNA; this ternary complex explains the important role 
of Ercc1 in targeting its catalytic XPF partner to the NER 
pre-incision complex.
Length=114

 Score = 226 bits (580),  Expect = 9e-76, Method: Composition-based stats.
 Identities = 77/114 (68%), Positives = 94/114 (82%), Gaps = 0/114 (0%)

Query  58   AILVSTRQKGNPILNHIKLLPWEYADIPADYVVGATTCALFLSLKYHRLHPEYIYSRIKA  117
             ILV+ RQKGNP+L HI+ +PWEY DI  DYV+G+TTC LFLSLKYHRLHPEYI++RIK 
Sbjct  1    TILVNPRQKGNPLLKHIRNVPWEYGDIVPDYVIGSTTCVLFLSLKYHRLHPEYIHTRIKK  60

Query  118  LGGKYMLRIILVMVDIENHEDSLKELSKTSIINNYTLMLCWSAPEAAHYLELYK  171
            LG  Y LRI+LV+VD+E+HED+L+EL+K  I+NN TL+L WS  EAA YLE YK
Sbjct  61   LGKSYKLRILLVLVDVEDHEDALRELTKICILNNLTLILAWSFEEAARYLETYK  114



Lambda      K        H        a         alpha
   0.310    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00030013

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein...  226     9e-76


>CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein Ercc1 
(rad10/Swi10).  Ercc1 and XPF (xeroderma pigmentosum group F-complementing 
protein) are two structure-specific endonucleases 
of a class of seven containing an ERCC4 domain. Together 
they form an obligate complex that functions primarily in 
nucleotide excision repair (NER), a versatile pathway able to 
detect and remove a variety of DNA lesions induced by UV light 
and environmental carcinogens, and secondarily in DNA interstrand 
cross-link repair and telomere maintenance. This 
domain in fact binds simultaneously to both XPF and single-stranded 
DNA; this ternary complex explains the important role 
of Ercc1 in targeting its catalytic XPF partner to the NER 
pre-incision complex.
Length=114

 Score = 226 bits (580),  Expect = 9e-76, Method: Composition-based stats.
 Identities = 77/114 (68%), Positives = 94/114 (82%), Gaps = 0/114 (0%)

Query  58   AILVSTRQKGNPILNHIKLLPWEYADIPADYVVGATTCALFLSLKYHRLHPEYIYSRIKA  117
             ILV+ RQKGNP+L HI+ +PWEY DI  DYV+G+TTC LFLSLKYHRLHPEYI++RIK 
Sbjct  1    TILVNPRQKGNPLLKHIRNVPWEYGDIVPDYVIGSTTCVLFLSLKYHRLHPEYIHTRIKK  60

Query  118  LGGKYMLRIILVMVDIENHEDSLKELSKTSIINNYTLMLCWSAPEAAHYLELYK  171
            LG  Y LRI+LV+VD+E+HED+L+EL+K  I+NN TL+L WS  EAA YLE YK
Sbjct  61   LGKSYKLRILLVLVDVEDHEDALRELTKICILNNLTLILAWSFEEAARYLETYK  114



Lambda      K        H        a         alpha
   0.310    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00030007

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein...  226     9e-76


>CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein Ercc1 
(rad10/Swi10).  Ercc1 and XPF (xeroderma pigmentosum group F-complementing 
protein) are two structure-specific endonucleases 
of a class of seven containing an ERCC4 domain. Together 
they form an obligate complex that functions primarily in 
nucleotide excision repair (NER), a versatile pathway able to 
detect and remove a variety of DNA lesions induced by UV light 
and environmental carcinogens, and secondarily in DNA interstrand 
cross-link repair and telomere maintenance. This 
domain in fact binds simultaneously to both XPF and single-stranded 
DNA; this ternary complex explains the important role 
of Ercc1 in targeting its catalytic XPF partner to the NER 
pre-incision complex.
Length=114

 Score = 226 bits (580),  Expect = 9e-76, Method: Composition-based stats.
 Identities = 77/114 (68%), Positives = 94/114 (82%), Gaps = 0/114 (0%)

Query  58   AILVSTRQKGNPILNHIKLLPWEYADIPADYVVGATTCALFLSLKYHRLHPEYIYSRIKA  117
             ILV+ RQKGNP+L HI+ +PWEY DI  DYV+G+TTC LFLSLKYHRLHPEYI++RIK 
Sbjct  1    TILVNPRQKGNPLLKHIRNVPWEYGDIVPDYVIGSTTCVLFLSLKYHRLHPEYIHTRIKK  60

Query  118  LGGKYMLRIILVMVDIENHEDSLKELSKTSIINNYTLMLCWSAPEAAHYLELYK  171
            LG  Y LRI+LV+VD+E+HED+L+EL+K  I+NN TL+L WS  EAA YLE YK
Sbjct  61   LGKSYKLRILLVLVDVEDHEDALRELTKICILNNLTLILAWSFEEAARYLETYK  114



Lambda      K        H        a         alpha
   0.310    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00034741

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein...  226     9e-76


>CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein Ercc1 
(rad10/Swi10).  Ercc1 and XPF (xeroderma pigmentosum group F-complementing 
protein) are two structure-specific endonucleases 
of a class of seven containing an ERCC4 domain. Together 
they form an obligate complex that functions primarily in 
nucleotide excision repair (NER), a versatile pathway able to 
detect and remove a variety of DNA lesions induced by UV light 
and environmental carcinogens, and secondarily in DNA interstrand 
cross-link repair and telomere maintenance. This 
domain in fact binds simultaneously to both XPF and single-stranded 
DNA; this ternary complex explains the important role 
of Ercc1 in targeting its catalytic XPF partner to the NER 
pre-incision complex.
Length=114

 Score = 226 bits (580),  Expect = 9e-76, Method: Composition-based stats.
 Identities = 77/114 (68%), Positives = 94/114 (82%), Gaps = 0/114 (0%)

Query  58   AILVSTRQKGNPILNHIKLLPWEYADIPADYVVGATTCALFLSLKYHRLHPEYIYSRIKA  117
             ILV+ RQKGNP+L HI+ +PWEY DI  DYV+G+TTC LFLSLKYHRLHPEYI++RIK 
Sbjct  1    TILVNPRQKGNPLLKHIRNVPWEYGDIVPDYVIGSTTCVLFLSLKYHRLHPEYIHTRIKK  60

Query  118  LGGKYMLRIILVMVDIENHEDSLKELSKTSIINNYTLMLCWSAPEAAHYLELYK  171
            LG  Y LRI+LV+VD+E+HED+L+EL+K  I+NN TL+L WS  EAA YLE YK
Sbjct  61   LGKSYKLRILLVLVDVEDHEDALRELTKICILNNLTLILAWSFEEAARYLETYK  114



Lambda      K        H        a         alpha
   0.310    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00034742

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein...  226     9e-76


>CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein Ercc1 
(rad10/Swi10).  Ercc1 and XPF (xeroderma pigmentosum group F-complementing 
protein) are two structure-specific endonucleases 
of a class of seven containing an ERCC4 domain. Together 
they form an obligate complex that functions primarily in 
nucleotide excision repair (NER), a versatile pathway able to 
detect and remove a variety of DNA lesions induced by UV light 
and environmental carcinogens, and secondarily in DNA interstrand 
cross-link repair and telomere maintenance. This 
domain in fact binds simultaneously to both XPF and single-stranded 
DNA; this ternary complex explains the important role 
of Ercc1 in targeting its catalytic XPF partner to the NER 
pre-incision complex.
Length=114

 Score = 226 bits (580),  Expect = 9e-76, Method: Composition-based stats.
 Identities = 77/114 (68%), Positives = 94/114 (82%), Gaps = 0/114 (0%)

Query  58   AILVSTRQKGNPILNHIKLLPWEYADIPADYVVGATTCALFLSLKYHRLHPEYIYSRIKA  117
             ILV+ RQKGNP+L HI+ +PWEY DI  DYV+G+TTC LFLSLKYHRLHPEYI++RIK 
Sbjct  1    TILVNPRQKGNPLLKHIRNVPWEYGDIVPDYVIGSTTCVLFLSLKYHRLHPEYIHTRIKK  60

Query  118  LGGKYMLRIILVMVDIENHEDSLKELSKTSIINNYTLMLCWSAPEAAHYLELYK  171
            LG  Y LRI+LV+VD+E+HED+L+EL+K  I+NN TL+L WS  EAA YLE YK
Sbjct  61   LGKSYKLRILLVLVDVEDHEDALRELTKICILNNLTLILAWSFEEAARYLETYK  114



Lambda      K        H        a         alpha
   0.310    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0708    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00030009

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein...  226     9e-76


>CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein Ercc1 
(rad10/Swi10).  Ercc1 and XPF (xeroderma pigmentosum group F-complementing 
protein) are two structure-specific endonucleases 
of a class of seven containing an ERCC4 domain. Together 
they form an obligate complex that functions primarily in 
nucleotide excision repair (NER), a versatile pathway able to 
detect and remove a variety of DNA lesions induced by UV light 
and environmental carcinogens, and secondarily in DNA interstrand 
cross-link repair and telomere maintenance. This 
domain in fact binds simultaneously to both XPF and single-stranded 
DNA; this ternary complex explains the important role 
of Ercc1 in targeting its catalytic XPF partner to the NER 
pre-incision complex.
Length=114

 Score = 226 bits (580),  Expect = 9e-76, Method: Composition-based stats.
 Identities = 77/114 (68%), Positives = 94/114 (82%), Gaps = 0/114 (0%)

Query  58   AILVSTRQKGNPILNHIKLLPWEYADIPADYVVGATTCALFLSLKYHRLHPEYIYSRIKA  117
             ILV+ RQKGNP+L HI+ +PWEY DI  DYV+G+TTC LFLSLKYHRLHPEYI++RIK 
Sbjct  1    TILVNPRQKGNPLLKHIRNVPWEYGDIVPDYVIGSTTCVLFLSLKYHRLHPEYIHTRIKK  60

Query  118  LGGKYMLRIILVMVDIENHEDSLKELSKTSIINNYTLMLCWSAPEAAHYLELYK  171
            LG  Y LRI+LV+VD+E+HED+L+EL+K  I+NN TL+L WS  EAA YLE YK
Sbjct  61   LGKSYKLRILLVLVDVEDHEDALRELTKICILNNLTLILAWSFEEAARYLETYK  114



Lambda      K        H        a         alpha
   0.310    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00030011

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein...  226     9e-76


>CDD:461070 pfam03834, Rad10, Binding domain of DNA repair protein Ercc1 
(rad10/Swi10).  Ercc1 and XPF (xeroderma pigmentosum group F-complementing 
protein) are two structure-specific endonucleases 
of a class of seven containing an ERCC4 domain. Together 
they form an obligate complex that functions primarily in 
nucleotide excision repair (NER), a versatile pathway able to 
detect and remove a variety of DNA lesions induced by UV light 
and environmental carcinogens, and secondarily in DNA interstrand 
cross-link repair and telomere maintenance. This 
domain in fact binds simultaneously to both XPF and single-stranded 
DNA; this ternary complex explains the important role 
of Ercc1 in targeting its catalytic XPF partner to the NER 
pre-incision complex.
Length=114

 Score = 226 bits (580),  Expect = 9e-76, Method: Composition-based stats.
 Identities = 77/114 (68%), Positives = 94/114 (82%), Gaps = 0/114 (0%)

Query  58   AILVSTRQKGNPILNHIKLLPWEYADIPADYVVGATTCALFLSLKYHRLHPEYIYSRIKA  117
             ILV+ RQKGNP+L HI+ +PWEY DI  DYV+G+TTC LFLSLKYHRLHPEYI++RIK 
Sbjct  1    TILVNPRQKGNPLLKHIRNVPWEYGDIVPDYVIGSTTCVLFLSLKYHRLHPEYIHTRIKK  60

Query  118  LGGKYMLRIILVMVDIENHEDSLKELSKTSIINNYTLMLCWSAPEAAHYLELYK  171
            LG  Y LRI+LV+VD+E+HED+L+EL+K  I+NN TL+L WS  EAA YLE YK
Sbjct  61   LGKSYKLRILLVLVDVEDHEDALRELTKICILNNLTLILAWSFEEAARYLETYK  114



Lambda      K        H        a         alpha
   0.310    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00030010

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00030015

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00034666

Length=957
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461172 pfam04097, Nic96, Nup93/Nic96. Nup93/Nic96 is a compon...  724     0.0  


>CDD:461172 pfam04097, Nic96, Nup93/Nic96.  Nup93/Nic96 is a component of 
the nuclear pore complex. It is required for the correct assembly 
of the nuclear pore complex. In Saccharomyces cerevisiae, 
Nic96 has been shown to be involved in the distribution 
and cellular concentration of the GTPase Gsp1. The structure 
of Nic96 has revealed a mostly alpha helical structure.
Length=613

 Score = 724 bits (1871),  Expect = 0.0, Method: Composition-based stats.
 Identities = 274/578 (47%), Positives = 355/578 (61%), Gaps = 63/578 (11%)

Query  369  QLFDAYRALISIVKEPPNTTSPSDPSMVRERQFSEDYLDETPNSRRTTNLKKRILEGSRS  428
            QL DA++AL  I  E P   S   P                   R++  L+KRI+EGSR 
Sbjct  2    QLVDAWKALAEITGEKPAARSDDPPG------------------RKSRALRKRIVEGSRR  43

Query  429  FLEKAFYSEIENMIVKNPREAQLGGIPTVINKIRAYIRLRAARKDLAPDGTELQMVGQDY  488
            +LEK F   +E +I KNPREAQLGG+P   NK+RA++R+R   KD A D   LQ+V  D 
Sbjct  44   YLEKQFLEYVEELIAKNPREAQLGGVPGNYNKVRAFVRVRLGLKDGAWDNDNLQIVNGDP  103

Query  489  CWILIFYLLRCGFITEAAEYVSQD-PGFRSLDHKFVTYMTTYAQS--RRLPRDLQQKING  545
             W LIFYLLRCG + EA EYV+++   FR +D  F  Y+  YA S  RRLP DL+ ++  
Sbjct  104  LWALIFYLLRCGDLDEALEYVNENGSSFRKIDRSFALYLKAYASSPDRRLPPDLEDRLKL  163

Query  546  EYQQRSRNAPDNTVDPYRMACYKIIGRCDLARRRLEGINQSVEDWMWLQFSLAREDD-RA  604
            EY QR RNAP    DPY+MA YKIIGRCDL+RR LE +  ++EDW+WLQ SL REDD R+
Sbjct  164  EYNQRIRNAPSI--DPYKMAVYKIIGRCDLSRRHLESVTLTIEDWLWLQLSLIREDDSRS  221

Query  605  EEIAGDVFGLEDIQTDIAEIGQRIFGKGQEASGGYGIFFLLQILGGMFEQAVSYLGS-YA  663
             E A + + L D+Q+ I E G+  F     AS   G++F + +L G FE A+ YL     
Sbjct  222  SEPASERYTLSDLQSLILEYGESYFN----ASSQPGLYFQVLLLTGQFEAAIEYLYRIDN  277

Query  664  PVSAVHFAIALAYYGLLRVSDFYTSAEEILSFTVKQYPQINFGHLITQYTREFRTGYVEA  723
             V AVHFAIALAYYGLLRVSD  +S+        +   +INF  LI  YTR+FR      
Sbjct  278  YVDAVHFAIALAYYGLLRVSDPSSSS----PLLSQPMRRINFARLIGLYTRDFRASDPRE  333

Query  724  AIDYFCLLCLNADLPGSLGKSQASVCHEALREFVLETRDFAKLLGDIRSDGTRIKGLIEQ  783
            A+DY  L+CLNADL    G  Q ++CHEALRE VLETR+FA LLGDIR DGTRI GLIE+
Sbjct  334  ALDYLYLICLNADL----GPEQRNLCHEALRELVLETREFALLLGDIRPDGTRIPGLIEE  389

Query  784  RMSLIKLVDQEEFLKTITIQAAAIADDKGLVTDAVLLYHLAEDYDRVIDIINRALSDAVA  843
            R+ LIKL D+++FL+TIT QAA  AD+KG   DA+LLYHLA +YD+V+ ++NR LS  ++
Sbjct  390  RLPLIKLDDEDDFLRTITEQAAREADEKGRTEDAILLYHLAGEYDKVLSLLNRLLSQVLS  449

Query  844  LELGSPGMKLQPLRPRTDLQQHANDEHEEAVEPGSSLSLTAVDDPVVLAKNMIGLYNTNA  903
                    +LQPL+PR                     S  +VDDP++LA+ ++  Y +NA
Sbjct  450  QT-----DRLQPLKPR---------------------SDRSVDDPILLAQRILERYESNA  483

Query  904  LYYQRIRQINRDACGLLLRMMEAKGEVEAGQWTPALDV  941
               +++   NR+ C LLL ++EA     AGQW  ALD 
Sbjct  484  EISEKVSAKNRETCRLLLDLLEAFDLYHAGQWDEALDT  521



Lambda      K        H        a         alpha
   0.318    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1219069236


Query= TCONS_00034667

Length=913
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461172 pfam04097, Nic96, Nup93/Nic96. Nup93/Nic96 is a compon...  834     0.0  


>CDD:461172 pfam04097, Nic96, Nup93/Nic96.  Nup93/Nic96 is a component of 
the nuclear pore complex. It is required for the correct assembly 
of the nuclear pore complex. In Saccharomyces cerevisiae, 
Nic96 has been shown to be involved in the distribution 
and cellular concentration of the GTPase Gsp1. The structure 
of Nic96 has revealed a mostly alpha helical structure.
Length=613

 Score = 834 bits (2157),  Expect = 0.0, Method: Composition-based stats.
 Identities = 307/674 (46%), Positives = 415/674 (62%), Gaps = 67/674 (10%)

Query  234  QLFDAYRALISIVKEPPNTTSPSDPSMVRERQFSEDYLDETPNSRRTTNLKKRILEGSRS  293
            QL DA++AL  I  E P   S   P                   R++  L+KRI+EGSR 
Sbjct  2    QLVDAWKALAEITGEKPAARSDDPPG------------------RKSRALRKRIVEGSRR  43

Query  294  FLEKAFYSEIENMIVKNPREAQLGGIPTVINKIRAYIRLRAARKDLAPDGTELQMVGQDY  353
            +LEK F   +E +I KNPREAQLGG+P   NK+RA++R+R   KD A D   LQ+V  D 
Sbjct  44   YLEKQFLEYVEELIAKNPREAQLGGVPGNYNKVRAFVRVRLGLKDGAWDNDNLQIVNGDP  103

Query  354  CWILIFYLLRCGFITEAAEYVSQD-PGFRSLDHKFVTYMTTYAQS--RRLPRDLQQKING  410
             W LIFYLLRCG + EA EYV+++   FR +D  F  Y+  YA S  RRLP DL+ ++  
Sbjct  104  LWALIFYLLRCGDLDEALEYVNENGSSFRKIDRSFALYLKAYASSPDRRLPPDLEDRLKL  163

Query  411  EYQQRSRNAPDNTVDPYRMACYKIIGRCDLARRRLEGINQSVEDWMWLQFSLAREDD-RA  469
            EY QR RNAP    DPY+MA YKIIGRCDL+RR LE +  ++EDW+WLQ SL REDD R+
Sbjct  164  EYNQRIRNAPSI--DPYKMAVYKIIGRCDLSRRHLESVTLTIEDWLWLQLSLIREDDSRS  221

Query  470  EEIAGDVFGLEDIQTDIAEIGQRIFGKGQEASGGYGIFFLLQILGGMFEQAVSYLGS-YA  528
             E A + + L D+Q+ I E G+  F     AS   G++F + +L G FE A+ YL     
Sbjct  222  SEPASERYTLSDLQSLILEYGESYFN----ASSQPGLYFQVLLLTGQFEAAIEYLYRIDN  277

Query  529  PVSAVHFAIALAYYGLLRVSDFYTSAEEILSFTVKQYPQINFGHLITQYTREFRTGYVEA  588
             V AVHFAIALAYYGLLRVSD  +S+        +   +INF  LI  YTR+FR      
Sbjct  278  YVDAVHFAIALAYYGLLRVSDPSSSS----PLLSQPMRRINFARLIGLYTRDFRASDPRE  333

Query  589  AIDYFCLLCLNADLPGSLGKSQASVCHEALREFVLETRDFAKLLGDIRSDGTRIKGLIEQ  648
            A+DY  L+CLNADL    G  Q ++CHEALRE VLETR+FA LLGDIR DGTRI GLIE+
Sbjct  334  ALDYLYLICLNADL----GPEQRNLCHEALRELVLETREFALLLGDIRPDGTRIPGLIEE  389

Query  649  RMSLIKLVDQEEFLKTITIQAAAIADDKGLVTDAVLLYHLAEDYDRVIDIINRALSDAVA  708
            R+ LIKL D+++FL+TIT QAA  AD+KG   DA+LLYHLA +YD+V+ ++NR LS  ++
Sbjct  390  RLPLIKLDDEDDFLRTITEQAAREADEKGRTEDAILLYHLAGEYDKVLSLLNRLLSQVLS  449

Query  709  LELGSPGMKLQPLRPRTDLQQHANDEHEEAVEPGSSLSLTAVDDPVVLAKNMIGLYNTNA  768
                    +LQPL+PR                     S  +VDDP++LA+ ++  Y +NA
Sbjct  450  QT-----DRLQPLKPR---------------------SDRSVDDPILLAQRILERYESNA  483

Query  769  LYYQRIRQINRDACGLLLRMMEAKGEVEAGQWTPALDAINELNILPLRARGSVSFIRSAA  828
               +++   NR+ C LLL ++EA     AGQW  ALD I +L++LPL      S +R+ A
Sbjct  484  EISEKVSAKNRETCRLLLDLLEAFDLYHAGQWDEALDTIEKLDLLPL----DPSEVRAKA  539

Query  829  QAFSSFPPIIARNVGHVIMWSITCIGHERARLSSGVYENETRQGLADELLVMAKDLMIFS  888
            QAF + P  +A+N+  +++ ++TC+ ++  +L +  Y NE ++   D+L   AK LM+F+
Sbjct  540  QAFKNLPDEVAKNIPDLLLATMTCLSNQYKQLKNSQYSNEGKRQQLDQLRQKAKALMVFA  599

Query  889  GMVKYKLPPRVYET  902
            GM+ Y++P   YE 
Sbjct  600  GMIPYRMPRDTYER  613



Lambda      K        H        a         alpha
   0.321    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1174250452


Query= TCONS_00029886

Length=1048
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461172 pfam04097, Nic96, Nup93/Nic96. Nup93/Nic96 is a compon...  842     0.0  


>CDD:461172 pfam04097, Nic96, Nup93/Nic96.  Nup93/Nic96 is a component of 
the nuclear pore complex. It is required for the correct assembly 
of the nuclear pore complex. In Saccharomyces cerevisiae, 
Nic96 has been shown to be involved in the distribution 
and cellular concentration of the GTPase Gsp1. The structure 
of Nic96 has revealed a mostly alpha helical structure.
Length=613

 Score = 842 bits (2177),  Expect = 0.0, Method: Composition-based stats.
 Identities = 307/674 (46%), Positives = 415/674 (62%), Gaps = 67/674 (10%)

Query  369   QLFDAYRALISIVKEPPNTTSPSDPSMVRERQFSEDYLDETPNSRRTTNLKKRILEGSRS  428
             QL DA++AL  I  E P   S   P                   R++  L+KRI+EGSR 
Sbjct  2     QLVDAWKALAEITGEKPAARSDDPPG------------------RKSRALRKRIVEGSRR  43

Query  429   FLEKAFYSEIENMIVKNPREAQLGGIPTVINKIRAYIRLRAARKDLAPDGTELQMVGQDY  488
             +LEK F   +E +I KNPREAQLGG+P   NK+RA++R+R   KD A D   LQ+V  D 
Sbjct  44    YLEKQFLEYVEELIAKNPREAQLGGVPGNYNKVRAFVRVRLGLKDGAWDNDNLQIVNGDP  103

Query  489   CWILIFYLLRCGFITEAAEYVSQD-PGFRSLDHKFVTYMTTYAQS--RRLPRDLQQKING  545
              W LIFYLLRCG + EA EYV+++   FR +D  F  Y+  YA S  RRLP DL+ ++  
Sbjct  104   LWALIFYLLRCGDLDEALEYVNENGSSFRKIDRSFALYLKAYASSPDRRLPPDLEDRLKL  163

Query  546   EYQQRSRNAPDNTVDPYRMACYKIIGRCDLARRRLEGINQSVEDWMWLQFSLAREDD-RA  604
             EY QR RNAP    DPY+MA YKIIGRCDL+RR LE +  ++EDW+WLQ SL REDD R+
Sbjct  164   EYNQRIRNAPSI--DPYKMAVYKIIGRCDLSRRHLESVTLTIEDWLWLQLSLIREDDSRS  221

Query  605   EEIAGDVFGLEDIQTDIAEIGQRIFGKGQEASGGYGIFFLLQILGGMFEQAVSYLGS-YA  663
              E A + + L D+Q+ I E G+  F     AS   G++F + +L G FE A+ YL     
Sbjct  222   SEPASERYTLSDLQSLILEYGESYFN----ASSQPGLYFQVLLLTGQFEAAIEYLYRIDN  277

Query  664   PVSAVHFAIALAYYGLLRVSDFYTSAEEILSFTVKQYPQINFGHLITQYTREFRTGYVEA  723
              V AVHFAIALAYYGLLRVSD  +S+        +   +INF  LI  YTR+FR      
Sbjct  278   YVDAVHFAIALAYYGLLRVSDPSSSS----PLLSQPMRRINFARLIGLYTRDFRASDPRE  333

Query  724   AIDYFCLLCLNADLPGSLGKSQASVCHEALREFVLETRDFAKLLGDIRSDGTRIKGLIEQ  783
             A+DY  L+CLNADL    G  Q ++CHEALRE VLETR+FA LLGDIR DGTRI GLIE+
Sbjct  334   ALDYLYLICLNADL----GPEQRNLCHEALRELVLETREFALLLGDIRPDGTRIPGLIEE  389

Query  784   RMSLIKLVDQEEFLKTITIQAAAIADDKGLVTDAVLLYHLAEDYDRVIDIINRALSDAVA  843
             R+ LIKL D+++FL+TIT QAA  AD+KG   DA+LLYHLA +YD+V+ ++NR LS  ++
Sbjct  390   RLPLIKLDDEDDFLRTITEQAAREADEKGRTEDAILLYHLAGEYDKVLSLLNRLLSQVLS  449

Query  844   LELGSPGMKLQPLRPRTDLQQHANDEHEEAVEPGSSLSLTAVDDPVVLAKNMIGLYNTNA  903
                     +LQPL+PR                     S  +VDDP++LA+ ++  Y +NA
Sbjct  450   QT-----DRLQPLKPR---------------------SDRSVDDPILLAQRILERYESNA  483

Query  904   LYYQRIRQINRDACGLLLRMMEAKGEVEAGQWTPALDAINELNILPLRARGSVSFIRSAA  963
                +++   NR+ C LLL ++EA     AGQW  ALD I +L++LPL      S +R+ A
Sbjct  484   EISEKVSAKNRETCRLLLDLLEAFDLYHAGQWDEALDTIEKLDLLPL----DPSEVRAKA  539

Query  964   QAFSSFPPIIARNVGHVIMWSITCIGHERARLSSGVYENETRQGLADELLVMAKDLMIFS  1023
             QAF + P  +A+N+  +++ ++TC+ ++  +L +  Y NE ++   D+L   AK LM+F+
Sbjct  540   QAFKNLPDEVAKNIPDLLLATMTCLSNQYKQLKNSQYSNEGKRQQLDQLRQKAKALMVFA  599

Query  1024  GMVKYKLPPRVYET  1037
             GM+ Y++P   YE 
Sbjct  600   GMIPYRMPRDTYER  613



Lambda      K        H        a         alpha
   0.319    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1347913952


Query= TCONS_00029889

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461172 pfam04097, Nic96, Nup93/Nic96. Nup93/Nic96 is a compon...  401     1e-137


>CDD:461172 pfam04097, Nic96, Nup93/Nic96.  Nup93/Nic96 is a component of 
the nuclear pore complex. It is required for the correct assembly 
of the nuclear pore complex. In Saccharomyces cerevisiae, 
Nic96 has been shown to be involved in the distribution 
and cellular concentration of the GTPase Gsp1. The structure 
of Nic96 has revealed a mostly alpha helical structure.
Length=613

 Score = 401 bits (1032),  Expect = 1e-137, Method: Composition-based stats.
 Identities = 149/287 (52%), Positives = 190/287 (66%), Gaps = 11/287 (4%)

Query  14   ETPNSRRTTNLKKRILEGSRSFLEKAFYSEIENMIVKNPREAQLGGIPTVINKIRAYIRL  73
            + P  R++  L+KRI+EGSR +LEK F   +E +I KNPREAQLGG+P   NK+RA++R+
Sbjct  23   DDPPGRKSRALRKRIVEGSRRYLEKQFLEYVEELIAKNPREAQLGGVPGNYNKVRAFVRV  82

Query  74   RAARKDLAPDGTELQMVGQDYCWILIFYLLRCGFITEAAEYVSQ-DPGFRSLDHKFVTYM  132
            R   KD A D   LQ+V  D  W LIFYLLRCG + EA EYV++    FR +D  F  Y+
Sbjct  83   RLGLKDGAWDNDNLQIVNGDPLWALIFYLLRCGDLDEALEYVNENGSSFRKIDRSFALYL  142

Query  133  TTYAQS--RRLPRDLQQKINGEYQQRSRNAPDNTVDPYRMACYKIIGRCDLARRRLEGIN  190
              YA S  RRLP DL+ ++  EY QR RNAP    DPY+MA YKIIGRCDL+RR LE + 
Sbjct  143  KAYASSPDRRLPPDLEDRLKLEYNQRIRNAPSI--DPYKMAVYKIIGRCDLSRRHLESVT  200

Query  191  QSVEDWMWLQFSLAREDD-RAEEIAGDVFGLEDIQTDIAEIGQRIFGKGQEASGGYGIFF  249
             ++EDW+WLQ SL REDD R+ E A + + L D+Q+ I E G+  F     AS   G++F
Sbjct  201  LTIEDWLWLQLSLIREDDSRSSEPASERYTLSDLQSLILEYGESYFN----ASSQPGLYF  256

Query  250  LLQILGGMFEQAVSYLGS-YAPVSAVHFAIALAYYGLLRVSDFYTSA  295
             + +L G FE A+ YL      V AVHFAIALAYYGLLRVSD  +S+
Sbjct  257  QVLLLTGQFEAAIEYLYRIDNYVDAVHFAIALAYYGLLRVSDPSSSS  303



Lambda      K        H        a         alpha
   0.323    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00029887

Length=702
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461172 pfam04097, Nic96, Nup93/Nic96. Nup93/Nic96 is a compon...  427     5e-142


>CDD:461172 pfam04097, Nic96, Nup93/Nic96.  Nup93/Nic96 is a component of 
the nuclear pore complex. It is required for the correct assembly 
of the nuclear pore complex. In Saccharomyces cerevisiae, 
Nic96 has been shown to be involved in the distribution 
and cellular concentration of the GTPase Gsp1. The structure 
of Nic96 has revealed a mostly alpha helical structure.
Length=613

 Score = 427 bits (1100),  Expect = 5e-142, Method: Composition-based stats.
 Identities = 159/326 (49%), Positives = 201/326 (62%), Gaps = 29/326 (9%)

Query  369  QLFDAYRALISIVKEPPNTTSPSDPSMVRERQFSEDYLDETPNSRRTTNLKKRILEGSRS  428
            QL DA++AL  I  E P   S   P                   R++  L+KRI+EGSR 
Sbjct  2    QLVDAWKALAEITGEKPAARSDDPPG------------------RKSRALRKRIVEGSRR  43

Query  429  FLEKAFYSEIENMIVKNPREAQLGGIPTVINKIRAYIRLRAARKDLAPDGTELQMVGQDY  488
            +LEK F   +E +I KNPREAQLGG+P   NK+RA++R+R   KD A D   LQ+V  D 
Sbjct  44   YLEKQFLEYVEELIAKNPREAQLGGVPGNYNKVRAFVRVRLGLKDGAWDNDNLQIVNGDP  103

Query  489  CWILIFYLLRCGFITEAAEYVSQ-DPGFRSLDHKFVTYMTTYAQS--RRLPRDLQQKING  545
             W LIFYLLRCG + EA EYV++    FR +D  F  Y+  YA S  RRLP DL+ ++  
Sbjct  104  LWALIFYLLRCGDLDEALEYVNENGSSFRKIDRSFALYLKAYASSPDRRLPPDLEDRLKL  163

Query  546  EYQQRSRNAPDNTVDPYRMACYKIIGRCDLARRRLEGINQSVEDWMWLQFSLAREDD-RA  604
            EY QR RNAP    DPY+MA YKIIGRCDL+RR LE +  ++EDW+WLQ SL REDD R+
Sbjct  164  EYNQRIRNAPSI--DPYKMAVYKIIGRCDLSRRHLESVTLTIEDWLWLQLSLIREDDSRS  221

Query  605  EEIAGDVFGLEDIQTDIAEIGQRIFGKGQEASGGYGIFFLLQILGGMFEQAVSYLGS-YA  663
             E A + + L D+Q+ I E G+  F     AS   G++F + +L G FE A+ YL     
Sbjct  222  SEPASERYTLSDLQSLILEYGESYFN----ASSQPGLYFQVLLLTGQFEAAIEYLYRIDN  277

Query  664  PVSAVHFAIALAYYGLLRVSDFYTSA  689
             V AVHFAIALAYYGLLRVSD  +S+
Sbjct  278  YVDAVHFAIALAYYGLLRVSDPSSSS  303



Lambda      K        H        a         alpha
   0.318    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 898147110


Query= TCONS_00029888

Length=845
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461172 pfam04097, Nic96, Nup93/Nic96. Nup93/Nic96 is a compon...  833     0.0  


>CDD:461172 pfam04097, Nic96, Nup93/Nic96.  Nup93/Nic96 is a component of 
the nuclear pore complex. It is required for the correct assembly 
of the nuclear pore complex. In Saccharomyces cerevisiae, 
Nic96 has been shown to be involved in the distribution 
and cellular concentration of the GTPase Gsp1. The structure 
of Nic96 has revealed a mostly alpha helical structure.
Length=613

 Score = 833 bits (2155),  Expect = 0.0, Method: Composition-based stats.
 Identities = 307/674 (46%), Positives = 415/674 (62%), Gaps = 67/674 (10%)

Query  166  QLFDAYRALISIVKEPPNTTSPSDPSMVRERQFSEDYLDETPNSRRTTNLKKRILEGSRS  225
            QL DA++AL  I  E P   S   P                   R++  L+KRI+EGSR 
Sbjct  2    QLVDAWKALAEITGEKPAARSDDPPG------------------RKSRALRKRIVEGSRR  43

Query  226  FLEKAFYSEIENMIVKNPREAQLGGIPTVINKIRAYIRLRAARKDLAPDGTELQMVGQDY  285
            +LEK F   +E +I KNPREAQLGG+P   NK+RA++R+R   KD A D   LQ+V  D 
Sbjct  44   YLEKQFLEYVEELIAKNPREAQLGGVPGNYNKVRAFVRVRLGLKDGAWDNDNLQIVNGDP  103

Query  286  CWILIFYLLRCGFITEAAEYVSQD-PGFRSLDHKFVTYMTTYAQS--RRLPRDLQQKING  342
             W LIFYLLRCG + EA EYV+++   FR +D  F  Y+  YA S  RRLP DL+ ++  
Sbjct  104  LWALIFYLLRCGDLDEALEYVNENGSSFRKIDRSFALYLKAYASSPDRRLPPDLEDRLKL  163

Query  343  EYQQRSRNAPDNTVDPYRMACYKIIGRCDLARRRLEGINQSVEDWMWLQFSLAREDD-RA  401
            EY QR RNAP    DPY+MA YKIIGRCDL+RR LE +  ++EDW+WLQ SL REDD R+
Sbjct  164  EYNQRIRNAPSI--DPYKMAVYKIIGRCDLSRRHLESVTLTIEDWLWLQLSLIREDDSRS  221

Query  402  EEIAGDVFGLEDIQTDIAEIGQRIFGKGQEASGGYGIFFLLQILGGMFEQAVSYLGS-YA  460
             E A + + L D+Q+ I E G+  F     AS   G++F + +L G FE A+ YL     
Sbjct  222  SEPASERYTLSDLQSLILEYGESYFN----ASSQPGLYFQVLLLTGQFEAAIEYLYRIDN  277

Query  461  PVSAVHFAIALAYYGLLRVSDFYTSAEEILSFTVKQYPQINFGHLITQYTREFRTGYVEA  520
             V AVHFAIALAYYGLLRVSD  +S+        +   +INF  LI  YTR+FR      
Sbjct  278  YVDAVHFAIALAYYGLLRVSDPSSSS----PLLSQPMRRINFARLIGLYTRDFRASDPRE  333

Query  521  AIDYFCLLCLNADLPGSLGKSQASVCHEALREFVLETRDFAKLLGDIRSDGTRIKGLIEQ  580
            A+DY  L+CLNADL    G  Q ++CHEALRE VLETR+FA LLGDIR DGTRI GLIE+
Sbjct  334  ALDYLYLICLNADL----GPEQRNLCHEALRELVLETREFALLLGDIRPDGTRIPGLIEE  389

Query  581  RMSLIKLVDQEEFLKTITIQAAAIADDKGLVTDAVLLYHLAEDYDRVIDIINRALSDAVA  640
            R+ LIKL D+++FL+TIT QAA  AD+KG   DA+LLYHLA +YD+V+ ++NR LS  ++
Sbjct  390  RLPLIKLDDEDDFLRTITEQAAREADEKGRTEDAILLYHLAGEYDKVLSLLNRLLSQVLS  449

Query  641  LELGSPGMKLQPLRPRTDLQQHANDEHEEAVEPGSSLSLTAVDDPVVLAKNMIGLYNTNA  700
                    +LQPL+PR                     S  +VDDP++LA+ ++  Y +NA
Sbjct  450  QT-----DRLQPLKPR---------------------SDRSVDDPILLAQRILERYESNA  483

Query  701  LYYQRIRQINRDACGLLLRMMEAKGEVEAGQWTPALDAINELNILPLRARGSVSFIRSAA  760
               +++   NR+ C LLL ++EA     AGQW  ALD I +L++LPL      S +R+ A
Sbjct  484  EISEKVSAKNRETCRLLLDLLEAFDLYHAGQWDEALDTIEKLDLLPL----DPSEVRAKA  539

Query  761  QAFSSFPPIIARNVGHVIMWSITCIGHERARLSSGVYENETRQGLADELLVMAKDLMIFS  820
            QAF + P  +A+N+  +++ ++TC+ ++  +L +  Y NE ++   D+L   AK LM+F+
Sbjct  540  QAFKNLPDEVAKNIPDLLLATMTCLSNQYKQLKNSQYSNEGKRQQLDQLRQKAKALMVFA  599

Query  821  GMVKYKLPPRVYET  834
            GM+ Y++P   YE 
Sbjct  600  GMIPYRMPRDTYER  613



Lambda      K        H        a         alpha
   0.321    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1076635500


Query= TCONS_00029891

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461172 pfam04097, Nic96, Nup93/Nic96. Nup93/Nic96 is a compon...  811     0.0  


>CDD:461172 pfam04097, Nic96, Nup93/Nic96.  Nup93/Nic96 is a component of 
the nuclear pore complex. It is required for the correct assembly 
of the nuclear pore complex. In Saccharomyces cerevisiae, 
Nic96 has been shown to be involved in the distribution 
and cellular concentration of the GTPase Gsp1. The structure 
of Nic96 has revealed a mostly alpha helical structure.
Length=613

 Score = 811 bits (2097),  Expect = 0.0, Method: Composition-based stats.
 Identities = 297/635 (47%), Positives = 404/635 (64%), Gaps = 49/635 (8%)

Query  14   ETPNSRRTTNLKKRILEGSRSFLEKAFYSEIENMIVKNPREAQLGGIPTVINKIRAYIRL  73
            + P  R++  L+KRI+EGSR +LEK F   +E +I KNPREAQLGG+P   NK+RA++R+
Sbjct  23   DDPPGRKSRALRKRIVEGSRRYLEKQFLEYVEELIAKNPREAQLGGVPGNYNKVRAFVRV  82

Query  74   RAARKDLAPDGTELQMVGQDYCWILIFYLLRCGFITEAAEYVSQD-PGFRSLDHKFVTYM  132
            R   KD A D   LQ+V  D  W LIFYLLRCG + EA EYV+++   FR +D  F  Y+
Sbjct  83   RLGLKDGAWDNDNLQIVNGDPLWALIFYLLRCGDLDEALEYVNENGSSFRKIDRSFALYL  142

Query  133  TTYAQS--RRLPRDLQQKINGEYQQRSRNAPDNTVDPYRMACYKIIGRCDLARRRLEGIN  190
              YA S  RRLP DL+ ++  EY QR RNAP    DPY+MA YKIIGRCDL+RR LE + 
Sbjct  143  KAYASSPDRRLPPDLEDRLKLEYNQRIRNAPSI--DPYKMAVYKIIGRCDLSRRHLESVT  200

Query  191  QSVEDWMWLQFSLAREDD-RAEEIAGDVFGLEDIQTDIAEIGQRIFGKGQEASGGYGIFF  249
             ++EDW+WLQ SL REDD R+ E A + + L D+Q+ I E G+  F     AS   G++F
Sbjct  201  LTIEDWLWLQLSLIREDDSRSSEPASERYTLSDLQSLILEYGESYFN----ASSQPGLYF  256

Query  250  LLQILGGMFEQAVSYLGS-YAPVSAVHFAIALAYYGLLRVSDFYTSAEEILSFTVKQYPQ  308
             + +L G FE A+ YL      V AVHFAIALAYYGLLRVSD  +S+        +   +
Sbjct  257  QVLLLTGQFEAAIEYLYRIDNYVDAVHFAIALAYYGLLRVSDPSSSS----PLLSQPMRR  312

Query  309  INFGHLITQYTREFRTGYVEAAIDYFCLLCLNADLPGSLGKSQASVCHEALREFVLETRD  368
            INF  LI  YTR+FR      A+DY  L+CLNADL    G  Q ++CHEALRE VLETR+
Sbjct  313  INFARLIGLYTRDFRASDPREALDYLYLICLNADL----GPEQRNLCHEALRELVLETRE  368

Query  369  FAKLLGDIRSDGTRIKGLIEQRMSLIKLVDQEEFLKTITIQAAAIADDKGLVTDAVLLYH  428
            FA LLGDIR DGTRI GLIE+R+ LIKL D+++FL+TIT QAA  AD+KG   DA+LLYH
Sbjct  369  FALLLGDIRPDGTRIPGLIEERLPLIKLDDEDDFLRTITEQAAREADEKGRTEDAILLYH  428

Query  429  LAEDYDRVIDIINRALSDAVALELGSPGMKLQPLRPRTDLQQHANDEHEEAVEPGSSLSL  488
            LA +YD+V+ ++NR LS  ++        +LQPL+PR                     S 
Sbjct  429  LAGEYDKVLSLLNRLLSQVLSQT-----DRLQPLKPR---------------------SD  462

Query  489  TAVDDPVVLAKNMIGLYNTNALYYQRIRQINRDACGLLLRMMEAKGEVEAGQWTPALDAI  548
             +VDDP++LA+ ++  Y +NA   +++   NR+ C LLL ++EA     AGQW  ALD I
Sbjct  463  RSVDDPILLAQRILERYESNAEISEKVSAKNRETCRLLLDLLEAFDLYHAGQWDEALDTI  522

Query  549  NELNILPLRARGSVSFIRSAAQAFSSFPPIIARNVGHVIMWSITCIGHERARLSSGVYEN  608
             +L++LPL      S +R+ AQAF + P  +A+N+  +++ ++TC+ ++  +L +  Y N
Sbjct  523  EKLDLLPL----DPSEVRAKAQAFKNLPDEVAKNIPDLLLATMTCLSNQYKQLKNSQYSN  578

Query  609  ETRQGLADELLVMAKDLMIFSGMVKYKLPPRVYET  643
            E ++   D+L   AK LM+F+GM+ Y++P   YE 
Sbjct  579  EGKRQQLDQLRQKAKALMVFAGMIPYRMPRDTYER  613



Lambda      K        H        a         alpha
   0.322    0.138    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 827357190


Query= TCONS_00034668

Length=1048
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461172 pfam04097, Nic96, Nup93/Nic96. Nup93/Nic96 is a compon...  842     0.0  


>CDD:461172 pfam04097, Nic96, Nup93/Nic96.  Nup93/Nic96 is a component of 
the nuclear pore complex. It is required for the correct assembly 
of the nuclear pore complex. In Saccharomyces cerevisiae, 
Nic96 has been shown to be involved in the distribution 
and cellular concentration of the GTPase Gsp1. The structure 
of Nic96 has revealed a mostly alpha helical structure.
Length=613

 Score = 842 bits (2177),  Expect = 0.0, Method: Composition-based stats.
 Identities = 307/674 (46%), Positives = 415/674 (62%), Gaps = 67/674 (10%)

Query  369   QLFDAYRALISIVKEPPNTTSPSDPSMVRERQFSEDYLDETPNSRRTTNLKKRILEGSRS  428
             QL DA++AL  I  E P   S   P                   R++  L+KRI+EGSR 
Sbjct  2     QLVDAWKALAEITGEKPAARSDDPPG------------------RKSRALRKRIVEGSRR  43

Query  429   FLEKAFYSEIENMIVKNPREAQLGGIPTVINKIRAYIRLRAARKDLAPDGTELQMVGQDY  488
             +LEK F   +E +I KNPREAQLGG+P   NK+RA++R+R   KD A D   LQ+V  D 
Sbjct  44    YLEKQFLEYVEELIAKNPREAQLGGVPGNYNKVRAFVRVRLGLKDGAWDNDNLQIVNGDP  103

Query  489   CWILIFYLLRCGFITEAAEYVSQD-PGFRSLDHKFVTYMTTYAQS--RRLPRDLQQKING  545
              W LIFYLLRCG + EA EYV+++   FR +D  F  Y+  YA S  RRLP DL+ ++  
Sbjct  104   LWALIFYLLRCGDLDEALEYVNENGSSFRKIDRSFALYLKAYASSPDRRLPPDLEDRLKL  163

Query  546   EYQQRSRNAPDNTVDPYRMACYKIIGRCDLARRRLEGINQSVEDWMWLQFSLAREDD-RA  604
             EY QR RNAP    DPY+MA YKIIGRCDL+RR LE +  ++EDW+WLQ SL REDD R+
Sbjct  164   EYNQRIRNAPSI--DPYKMAVYKIIGRCDLSRRHLESVTLTIEDWLWLQLSLIREDDSRS  221

Query  605   EEIAGDVFGLEDIQTDIAEIGQRIFGKGQEASGGYGIFFLLQILGGMFEQAVSYLGS-YA  663
              E A + + L D+Q+ I E G+  F     AS   G++F + +L G FE A+ YL     
Sbjct  222   SEPASERYTLSDLQSLILEYGESYFN----ASSQPGLYFQVLLLTGQFEAAIEYLYRIDN  277

Query  664   PVSAVHFAIALAYYGLLRVSDFYTSAEEILSFTVKQYPQINFGHLITQYTREFRTGYVEA  723
              V AVHFAIALAYYGLLRVSD  +S+        +   +INF  LI  YTR+FR      
Sbjct  278   YVDAVHFAIALAYYGLLRVSDPSSSS----PLLSQPMRRINFARLIGLYTRDFRASDPRE  333

Query  724   AIDYFCLLCLNADLPGSLGKSQASVCHEALREFVLETRDFAKLLGDIRSDGTRIKGLIEQ  783
             A+DY  L+CLNADL    G  Q ++CHEALRE VLETR+FA LLGDIR DGTRI GLIE+
Sbjct  334   ALDYLYLICLNADL----GPEQRNLCHEALRELVLETREFALLLGDIRPDGTRIPGLIEE  389

Query  784   RMSLIKLVDQEEFLKTITIQAAAIADDKGLVTDAVLLYHLAEDYDRVIDIINRALSDAVA  843
             R+ LIKL D+++FL+TIT QAA  AD+KG   DA+LLYHLA +YD+V+ ++NR LS  ++
Sbjct  390   RLPLIKLDDEDDFLRTITEQAAREADEKGRTEDAILLYHLAGEYDKVLSLLNRLLSQVLS  449

Query  844   LELGSPGMKLQPLRPRTDLQQHANDEHEEAVEPGSSLSLTAVDDPVVLAKNMIGLYNTNA  903
                     +LQPL+PR                     S  +VDDP++LA+ ++  Y +NA
Sbjct  450   QT-----DRLQPLKPR---------------------SDRSVDDPILLAQRILERYESNA  483

Query  904   LYYQRIRQINRDACGLLLRMMEAKGEVEAGQWTPALDAINELNILPLRARGSVSFIRSAA  963
                +++   NR+ C LLL ++EA     AGQW  ALD I +L++LPL      S +R+ A
Sbjct  484   EISEKVSAKNRETCRLLLDLLEAFDLYHAGQWDEALDTIEKLDLLPL----DPSEVRAKA  539

Query  964   QAFSSFPPIIARNVGHVIMWSITCIGHERARLSSGVYENETRQGLADELLVMAKDLMIFS  1023
             QAF + P  +A+N+  +++ ++TC+ ++  +L +  Y NE ++   D+L   AK LM+F+
Sbjct  540   QAFKNLPDEVAKNIPDLLLATMTCLSNQYKQLKNSQYSNEGKRQQLDQLRQKAKALMVFA  599

Query  1024  GMVKYKLPPRVYET  1037
             GM+ Y++P   YE 
Sbjct  600   GMIPYRMPRDTYER  613



Lambda      K        H        a         alpha
   0.319    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1347913952


Query= TCONS_00034669

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396444 pfam01872, RibD_C, RibD C-terminal domain. The functio...  129     2e-35


>CDD:396444 pfam01872, RibD_C, RibD C-terminal domain.  The function of this 
domain is not known, but it is thought to be involved in 
riboflavin biosynthesis. This domain is found in the C-terminus 
of RibD/RibG, in combination with pfam00383, as well as 
in isolation in some archaebacterial proteins. This family 
appears to be related to pfam00186.
Length=196

 Score = 129 bits (325),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 101/233 (43%), Gaps = 38/233 (16%)

Query  249  PHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGLNC  308
            P+V L +A S+D KI+   G    ++G EA+   H LR+  DAIL+G GTV ADNP L  
Sbjct  1    PYVILKFAISLDGKIAAAGGSSQWITGEEARADVHQLRAEADAILVGRGTVRADNPSLTV  60

Query  309  RLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKGKAPWVIVSPGAQIHP  368
            R        G     QP  VV+D T R P   + R+L            V  +       
Sbjct  61   RW-----VKGRAAERQPPRVVVDSTLRVP--LDARVLND-----DAPTLVATT--EPADK  106

Query  369  QKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGIKSVMIEGGGTVLSELLNPEYT  428
            +K+  LK                R+  + +LR L   GI+S+++EGG T+   LL     
Sbjct  107  EKVEKLK--------------VLRVDLKELLRELKERGIRSLLVEGGATLAGSLLR---A  149

Query  429  EFIDSIIVTVAPTYLGRGGVGVSPESKRDEQGKPNAALNPREIKWVPLGQNVI  481
              +D + + +AP  LG GG  +        +G     L  + +    +G  V+
Sbjct  150  GLVDELRLYIAPKLLGGGGRTL-----FGGEGFLALKL--KLVSSEAIGNGVV  195



Lambda      K        H        a         alpha
   0.318    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00029892

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00029893

Length=622
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396444 pfam01872, RibD_C, RibD C-terminal domain. The functio...  129     6e-35


>CDD:396444 pfam01872, RibD_C, RibD C-terminal domain.  The function of this 
domain is not known, but it is thought to be involved in 
riboflavin biosynthesis. This domain is found in the C-terminus 
of RibD/RibG, in combination with pfam00383, as well as 
in isolation in some archaebacterial proteins. This family 
appears to be related to pfam00186.
Length=196

 Score = 129 bits (325),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 101/233 (43%), Gaps = 38/233 (16%)

Query  378  PHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGLNC  437
            P+V L +A S+D KI+   G    ++G EA+   H LR+  DAIL+G GTV ADNP L  
Sbjct  1    PYVILKFAISLDGKIAAAGGSSQWITGEEARADVHQLRAEADAILVGRGTVRADNPSLTV  60

Query  438  RLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKGKAPWVIVSPGAQIHP  497
            R        G     QP  VV+D T R P   + R+L            V  +       
Sbjct  61   RW-----VKGRAAERQPPRVVVDSTLRVP--LDARVLND-----DAPTLVATT--EPADK  106

Query  498  QKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGIKSVMIEGGGTVLSELLNPEYT  557
            +K+  LK                R+  + +LR L   GI+S+++EGG T+   LL     
Sbjct  107  EKVEKLK--------------VLRVDLKELLRELKERGIRSLLVEGGATLAGSLLR---A  149

Query  558  EFIDSIIVTVAPTYLGRGGVGVSPESKRDEQGKPNAALNPREIKWVPLGQNVI  610
              +D + + +AP  LG GG  +        +G     L  + +    +G  V+
Sbjct  150  GLVDELRLYIAPKLLGGGGRTL-----FGGEGFLALKL--KLVSSEAIGNGVV  195



Lambda      K        H        a         alpha
   0.315    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 792046840


Query= TCONS_00034670

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.127    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00029894

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.127    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00034671

Length=386


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00029896

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463187 pfam10785, NADH-u_ox-rdase, NADH-ubiquinone oxidoreduc...  139     5e-44
CDD:372344 pfam12853, NADH_u_ox_C, C-terminal of NADH-ubiquinone ...  101     3e-29


>CDD:463187 pfam10785, NADH-u_ox-rdase, NADH-ubiquinone oxidoreductase complex 
I, 21 kDa subunit.  This family is the N-terminal domain 
of NADH-ubiquinone oxidoreductase 21 kDa subunits from fungi, 
lower metazoa and plants.
Length=85

 Score = 139 bits (352),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 49/86 (57%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query  17   TDYPLIDSDPHLRRVFGYARPSDYAVAGGMAAASPLAFWAMERVSPSHVGRGGFAPVMRL  76
              YP+IDSDPH  RV  Y RPSDYAV  G  AA P  ++A E++SPS  G   FAP MRL
Sbjct  1    PPYPVIDSDPHFSRVVRYFRPSDYAVWAGATAAFPAGYYAWEKLSPSRAGP-SFAPAMRL  59

Query  77   ATAIGLIGGLHILYQRSCNRFYGFTE  102
            A  +G IGG  + YQRS  R YGFTE
Sbjct  60   AGLLGFIGGFLLAYQRSSLRLYGFTE  85


>CDD:372344 pfam12853, NADH_u_ox_C, C-terminal of NADH-ubiquinone oxidoreductase 
21 kDa subunit.  This family is the C-terminal domain 
of NADH-ubiquinone oxidoreductase 21 kDa subunits from fungi.
Length=89

 Score = 101 bits (254),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 39/71 (55%), Gaps = 2/71 (3%)

Query  111  MREMVDKVKKGEPLY--GTSQVSSYLQGVAARNSRYSQLFIHVLPWFNIVNHDQHGVDTA  168
              E+   + +G+  Y    S +   L+ VA RNS+YS L + +LPWFN  NH  HGVD A
Sbjct  1    RYEIKKLLSQGKLPYHENESVLDDRLKDVANRNSQYSFLLLAILPWFNFANHPYHGVDLA  60

Query  169  KYYQQAERELE  179
            KYY     E E
Sbjct  61   KYYVNRPGEEE  71



Lambda      K        H        a         alpha
   0.320    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00029897

Length=1725
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462350 pfam08064, UME, UME (NUC010) domain. This domain is ch...  151     3e-43
CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  70.1    6e-13


>CDD:462350 pfam08064, UME, UME (NUC010) domain.  This domain is characteristic 
of UVSB PI-3 kinase, MEI-41 and ESR1.
Length=102

 Score = 151 bits (383),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 49/102 (48%), Positives = 73/102 (72%), Gaps = 0/102 (0%)

Query  908   FIEEHVLGIITQFAHAINDFQIRQPLIEKRRNILAIGEMIKVARGHISSALPQICACLRS  967
             F+E H+LGI+ +F+  +ND + ++P+ EK+R + +I E+IK+    ISSALPQI ACL+S
Sbjct  1     FLENHILGILARFSDVLNDLRGKKPVEEKKRALRSIEELIKLMGSAISSALPQIMACLQS  60

Query  968   ALSIEELSDHAFSAWSVLVSSLHEEELEPLIDQTFSIVIRYW  1009
             AL I EL + A S W   V +L EE+L PL+DQTF+ +++ W
Sbjct  61    ALEIPELREVALSCWDAFVKTLDEEDLGPLLDQTFAAILQLW  102


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 70.1 bits (172),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 59/156 (38%), Gaps = 6/156 (4%)

Query  1571  PFAVEASWITGNWDKLRSYLQMRSPENTGDFNIGVGSALCALRLGNKTEFRNIIHDLQLS  1630
             P A EA+W  G WD +R YL +   +++ D       A+ AL      E    I   +  
Sbjct  2     PLAAEAAWRLGQWDLMREYLSL-MKKDSPDKAFF--EAILALHRNQFDEAERYIEKARQL  58

Query  1631  VAKSLTVNSVTSLQSCHDSILKLHALTEMELIS---DCEGTENSSLTSIHDVLNRRLDVL  1687
             +   L+  S  S    +  +++L  L E+E I       G  +  L S+      RL   
Sbjct  59    LDTELSALSGESYNRAYPLLVRLQQLAELEEIIQYKQKLGQSSEELKSLLQTWRNRLPGC  118

Query  1688  GGYIADKQYLLGLRRATMELTWDSFLQCSSEGMLTR  1723
                +   Q +L +R   +    D +L      M  +
Sbjct  119   QDDVEIWQDILTVRSLVLSPIEDVYLGGYHAEMWLK  154



Lambda      K        H        a         alpha
   0.321    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2173151500


Query= TCONS_00029898

Length=2449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  233     8e-70
CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  185     6e-52
CDD:462350 pfam08064, UME, UME (NUC010) domain. This domain is ch...  153     6e-44


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 233 bits (596),  Expect = 8e-70, Method: Composition-based stats.
 Identities = 88/246 (36%), Positives = 130/246 (53%), Gaps = 9/246 (4%)

Query  2162  IYNVLCKPKDDLRKDQRLMEFNNTINRFLKKDVESSKRRMYIKTYAVTPLNEECGLIEWV  2221
              Y  + K  DDLR+D+ +++    ++  L KD    +R   +K Y+V PL  +CG+IEWV
Sbjct  1     GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  2222  DNLRTLREIIIKLLKERGIMPNYNEIRHYLNEACSEASKLHL-FTTKVLMKFPPVLHEWF  2280
              N  TL  I+ +  +         +I H          KL L F +++ +     L +WF
Sbjct  58    PNSETLAYILDEYGENGVPPTAMVKILHS----ALNYPKLKLEFESRISLPPKVGLLQWF  113

Query  2281  VEMFPETGAWFAARLRYTRSCAVMSMVGYVLGLGDRHGENILFEEGTGGVIHVDFN-CLF  2339
             V+  P+   W  AR  + RSCA  S++ Y+LG GDRH +NIL ++ TG + H+DF  CL 
Sbjct  114   VKKSPDAEEWGEARKNFVRSCAGYSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCLP  173

Query  2340  DKGLTFEKPELVPFRLTQNMIDAFGAYGYNGPFRRTCEISLRLLRQNEDALMTVLETFLH  2399
             D G     PE VPFRLT+ M+ A G  G  G FR  CE +   LR+N + L  +L+  + 
Sbjct  174   DAGKDLPFPEKVPFRLTREMVYAMGPSGDEGLFRELCETAYEALRRNLNLLTNLLKLMVA  233

Query  2400  DPTTDF  2405
             D   D+
Sbjct  234   DGLPDW  239


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 185 bits (472),  Expect = 6e-52, Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 136/347 (39%), Gaps = 23/347 (7%)

Query  1593  PFAVEASWITGNWDKLRSYLQMRSPENTGDFNIGVGSALCALRLGNKTEFRNIIHDLQLS  1652
             P A EA+W  G WD +R YL +   +++ D       A+ AL      E    I   +  
Sbjct  2     PLAAEAAWRLGQWDLMREYLSL-MKKDSPDKAFF--EAILALHRNQFDEAERYIEKARQL  58

Query  1653  VAKSLTVNSVTSLQSCHDSILKLHALTEMELIS---DCEGTENSSLTSIHDVLNRRLDVL  1709
             +   L+  S  S    +  +++L  L E+E I       G  +  L S+      RL   
Sbjct  59    LDTELSALSGESYNRAYPLLVRLQQLAELEEIIQYKQKLGQSSEELKSLLQTWRNRLPGC  118

Query  1710  GGYIADKQYLLGLRRATME-LTHGFMESDIAGSWLTSARLSRKGNYTNQAYHSMLRAARL  1768
                +   Q +L +R   +  +   ++    A  WL  A L+RK    + A  ++L+    
Sbjct  119   QDDVEIWQDILTVRSLVLSPIEDVYLGGYHAEMWLKFANLARKSGRFSLAEKALLKLLGE  178

Query  1769  KDRS----ATIEHARLLWKDGHHRKAIQTLEGAIAANEFASDTSSSG----GLKN-EKQQ  1819
                         +A+ LW  G  ++A+  L   ++     +    SG       N E+  
Sbjct  179   DPEEWLPEVVYAYAKYLWPTGEQQEALLKLREFLSCYLQKNGELLSGLEVINPTNLEEFT  238

Query  1820  NLIAARAHLLLAKWTDRAGQ----TQSDVIVQRYREAIKLHSRWEKAHYYLGKHYDKILE  1875
              L+A R +LL  KW    GQ     +S+ I+Q Y  A +    W KA +       ++L 
Sbjct  239   ELLA-RCYLLKGKWQAALGQNWAEEKSEEILQAYLLATQFDPSWYKAWHTWALFNFEVLR  297

Query  1876  SEKAKPLGKEAQIYLSGEASKLVIDNYLRSLAHGNKYVFQSLPRILT  1922
              E+     +  +           ++ YLRSL+  ++   Q   R+LT
Sbjct  298   KEEQGKEEEGPEDL--SRYVVPAVEGYLRSLSLSSENSLQDTLRLLT  342


>CDD:462350 pfam08064, UME, UME (NUC010) domain.  This domain is characteristic 
of UVSB PI-3 kinase, MEI-41 and ESR1.
Length=102

 Score = 153 bits (389),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 49/102 (48%), Positives = 73/102 (72%), Gaps = 0/102 (0%)

Query  908   FIEEHVLGIITQFAHAINDFQIRQPLIEKRRNILAIGEMIKVARGHISSALPQICACLRS  967
             F+E H+LGI+ +F+  +ND + ++P+ EK+R + +I E+IK+    ISSALPQI ACL+S
Sbjct  1     FLENHILGILARFSDVLNDLRGKKPVEEKKRALRSIEELIKLMGSAISSALPQIMACLQS  60

Query  968   ALSIEELSDHAFSAWSVLVSSLHEEELEPLIDQTFSIVIRYW  1009
             AL I EL + A S W   V +L EE+L PL+DQTF+ +++ W
Sbjct  61    ALEIPELREVALSCWDAFVKTLDEEDLGPLLDQTFAAILQLW  102



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0708    0.140     1.90     42.6     43.6 

Effective search space used: 3046518656


Query= TCONS_00034673

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  227     3e-73


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 227 bits (580),  Expect = 3e-73, Method: Composition-based stats.
 Identities = 88/246 (36%), Positives = 130/246 (53%), Gaps = 9/246 (4%)

Query  109  IYNVLCKPKDDLRKDQRLMEFNNTINRFLKKDVESSKRRMYIKTYAVTPLNEECGLIEWV  168
             Y  + K  DDLR+D+ +++    ++  L KD    +R   +K Y+V PL  +CG+IEWV
Sbjct  1    GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  169  DNLRTLREIIIKLLKERGIMPNYNEIRHYLNEACSEASKLHL-FTTKVLMKFPPVLHEWF  227
             N  TL  I+ +  +         +I H          KL L F +++ +     L +WF
Sbjct  58   PNSETLAYILDEYGENGVPPTAMVKILHS----ALNYPKLKLEFESRISLPPKVGLLQWF  113

Query  228  VEMFPETGAWFAARLRYTRSCAVMSMVGYVLGLGDRHGENILFEEGTGGVIHVDFN-CLF  286
            V+  P+   W  AR  + RSCA  S++ Y+LG GDRH +NIL ++ TG + H+DF  CL 
Sbjct  114  VKKSPDAEEWGEARKNFVRSCAGYSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCLP  173

Query  287  DKGLTFEKPELVPFRLTQNMIDAFGAYGYNGPFRRTCEISLRLLRQNEDALMTVLETFLH  346
            D G     PE VPFRLT+ M+ A G  G  G FR  CE +   LR+N + L  +L+  + 
Sbjct  174  DAGKDLPFPEKVPFRLTREMVYAMGPSGDEGLFRELCETAYEALRRNLNLLTNLLKLMVA  233

Query  347  DPTTDF  352
            D   D+
Sbjct  234  DGLPDW  239



Lambda      K        H        a         alpha
   0.323    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00029899

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  227     3e-73
CDD:460514 pfam02260, FATC, FATC domain. The FATC domain is named...  66.6    5e-15


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 227 bits (581),  Expect = 3e-73, Method: Composition-based stats.
 Identities = 88/246 (36%), Positives = 130/246 (53%), Gaps = 9/246 (4%)

Query  109  IYNVLCKPKDDLRKDQRLMEFNNTINRFLKKDVESSKRRMYIKTYAVTPLNEECGLIEWV  168
             Y  + K  DDLR+D+ +++    ++  L KD    +R   +K Y+V PL  +CG+IEWV
Sbjct  1    GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  169  DNLRTLREIIIKLLKERGIMPNYNEIRHYLNEACSEASKLHL-FTTKVLMKFPPVLHEWF  227
             N  TL  I+ +  +         +I H          KL L F +++ +     L +WF
Sbjct  58   PNSETLAYILDEYGENGVPPTAMVKILHS----ALNYPKLKLEFESRISLPPKVGLLQWF  113

Query  228  VEMFPETGAWFAARLRYTRSCAVMSMVGYVLGLGDRHGENILFEEGTGGVIHVDFN-CLF  286
            V+  P+   W  AR  + RSCA  S++ Y+LG GDRH +NIL ++ TG + H+DF  CL 
Sbjct  114  VKKSPDAEEWGEARKNFVRSCAGYSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCLP  173

Query  287  DKGLTFEKPELVPFRLTQNMIDAFGAYGYNGPFRRTCEISLRLLRQNEDALMTVLETFLH  346
            D G     PE VPFRLT+ M+ A G  G  G FR  CE +   LR+N + L  +L+  + 
Sbjct  174  DAGKDLPFPEKVPFRLTREMVYAMGPSGDEGLFRELCETAYEALRRNLNLLTNLLKLMVA  233

Query  347  DPTTDF  352
            D   D+
Sbjct  234  DGLPDW  239


>CDD:460514 pfam02260, FATC, FATC domain.  The FATC domain is named after 
FRAP, ATM, TRRAP C-terminal. The solution structure of the 
FATC domain suggests it plays a role in redox-dependent structural 
and cellular stability.
Length=32

 Score = 66.6 bits (164),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 22/32 (69%), Positives = 26/32 (81%), Gaps = 0/32 (0%)

Query  388  PLSVDGHVDELITQATDKRNLAAMYIGWCAFF  419
            PLSV+G VDELI +ATD  NLA MYIGWC ++
Sbjct  1    PLSVEGQVDELIQEATDPENLAQMYIGWCPWW  32



Lambda      K        H        a         alpha
   0.323    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00029901

Length=2428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  233     7e-70
CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  185     7e-52
CDD:462350 pfam08064, UME, UME (NUC010) domain. This domain is ch...  153     5e-44


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 233 bits (596),  Expect = 7e-70, Method: Composition-based stats.
 Identities = 88/246 (36%), Positives = 130/246 (53%), Gaps = 9/246 (4%)

Query  2134  IYNVLCKPKDDLRKDQRLMEFNNTINRFLKKDVESSKRRMYIKTYAVTPLNEECGLIEWV  2193
              Y  + K  DDLR+D+ +++    ++  L KD    +R   +K Y+V PL  +CG+IEWV
Sbjct  1     GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  2194  DNLRTLREIIIKLLKERGIMPNYNEIRHYLNEACSEASKLHL-FTTKVLMKFPPVLHEWF  2252
              N  TL  I+ +  +         +I H          KL L F +++ +     L +WF
Sbjct  58    PNSETLAYILDEYGENGVPPTAMVKILHS----ALNYPKLKLEFESRISLPPKVGLLQWF  113

Query  2253  VEMFPETGAWFAARLRYTRSCAVMSMVGYVLGLGDRHGENILFEEGTGGVIHVDFN-CLF  2311
             V+  P+   W  AR  + RSCA  S++ Y+LG GDRH +NIL ++ TG + H+DF  CL 
Sbjct  114   VKKSPDAEEWGEARKNFVRSCAGYSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCLP  173

Query  2312  DKGLTFEKPELVPFRLTQNMIDAFGAYGYNGPFRRTCEISLRLLRQNEDALMTVLETFLH  2371
             D G     PE VPFRLT+ M+ A G  G  G FR  CE +   LR+N + L  +L+  + 
Sbjct  174   DAGKDLPFPEKVPFRLTREMVYAMGPSGDEGLFRELCETAYEALRRNLNLLTNLLKLMVA  233

Query  2372  DPTTDF  2377
             D   D+
Sbjct  234   DGLPDW  239


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 185 bits (471),  Expect = 7e-52, Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 136/347 (39%), Gaps = 23/347 (7%)

Query  1571  PFAVEASWITGNWDKLRSYLQMRSPENTGDFNIGVGSALCALRLGNKTEFRNIIHDLQLS  1630
             P A EA+W  G WD +R YL +   +++ D       A+ AL      E    I   +  
Sbjct  2     PLAAEAAWRLGQWDLMREYLSL-MKKDSPDKAFF--EAILALHRNQFDEAERYIEKARQL  58

Query  1631  VAKSLTVNSVTSLQSCHDSILKLHALTEMELIS---DCEGTENSSLTSIHDVLNRRLDVL  1687
             +   L+  S  S    +  +++L  L E+E I       G  +  L S+      RL   
Sbjct  59    LDTELSALSGESYNRAYPLLVRLQQLAELEEIIQYKQKLGQSSEELKSLLQTWRNRLPGC  118

Query  1688  GGYIADKQYLLGLRRATME-LTHGFMESDIAGSWLTSARLSRKGNYTNQAYHSMLRAARL  1746
                +   Q +L +R   +  +   ++    A  WL  A L+RK    + A  ++L+    
Sbjct  119   QDDVEIWQDILTVRSLVLSPIEDVYLGGYHAEMWLKFANLARKSGRFSLAEKALLKLLGE  178

Query  1747  KDRS----ATIEHARLLWKDGHHRKAIQTLEGAIAANEFASDTSSSG----GLKN-EKQQ  1797
                         +A+ LW  G  ++A+  L   ++     +    SG       N E+  
Sbjct  179   DPEEWLPEVVYAYAKYLWPTGEQQEALLKLREFLSCYLQKNGELLSGLEVINPTNLEEFT  238

Query  1798  NLIAARAHLLLAKWTDRAGQ----TQSDVIVQRYREAIKLHSRWEKAHYYLGKHYDKILE  1853
              L+A R +LL  KW    GQ     +S+ I+Q Y  A +    W KA +       ++L 
Sbjct  239   ELLA-RCYLLKGKWQAALGQNWAEEKSEEILQAYLLATQFDPSWYKAWHTWALFNFEVLR  297

Query  1854  SEKAKPLGKEAQIYLSGEASKLVIDNYLRSLAHGNKYVFQSLPRILT  1900
              E+     +  +           ++ YLRSL+  ++   Q   R+LT
Sbjct  298   KEEQGKEEEGPEDL--SRYVVPAVEGYLRSLSLSSENSLQDTLRLLT  342


>CDD:462350 pfam08064, UME, UME (NUC010) domain.  This domain is characteristic 
of UVSB PI-3 kinase, MEI-41 and ESR1.
Length=102

 Score = 153 bits (390),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 49/102 (48%), Positives = 73/102 (72%), Gaps = 0/102 (0%)

Query  908   FIEEHVLGIITQFAHAINDFQIRQPLIEKRRNILAIGEMIKVARGHISSALPQICACLRS  967
             F+E H+LGI+ +F+  +ND + ++P+ EK+R + +I E+IK+    ISSALPQI ACL+S
Sbjct  1     FLENHILGILARFSDVLNDLRGKKPVEEKKRALRSIEELIKLMGSAISSALPQIMACLQS  60

Query  968   ALSIEELSDHAFSAWSVLVSSLHEEELEPLIDQTFSIVIRYW  1009
             AL I EL + A S W   V +L EE+L PL+DQTF+ +++ W
Sbjct  61    ALEIPELREVALSCWDAFVKTLDEEDLGPLLDQTFAAILQLW  102



Lambda      K        H        a         alpha
   0.321    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3019259648


Query= TCONS_00029900

Length=2421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  233     8e-70
CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  185     9e-52
CDD:462350 pfam08064, UME, UME (NUC010) domain. This domain is ch...  153     6e-44


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 233 bits (596),  Expect = 8e-70, Method: Composition-based stats.
 Identities = 88/246 (36%), Positives = 130/246 (53%), Gaps = 9/246 (4%)

Query  2127  IYNVLCKPKDDLRKDQRLMEFNNTINRFLKKDVESSKRRMYIKTYAVTPLNEECGLIEWV  2186
              Y  + K  DDLR+D+ +++    ++  L KD    +R   +K Y+V PL  +CG+IEWV
Sbjct  1     GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  2187  DNLRTLREIIIKLLKERGIMPNYNEIRHYLNEACSEASKLHL-FTTKVLMKFPPVLHEWF  2245
              N  TL  I+ +  +         +I H          KL L F +++ +     L +WF
Sbjct  58    PNSETLAYILDEYGENGVPPTAMVKILHS----ALNYPKLKLEFESRISLPPKVGLLQWF  113

Query  2246  VEMFPETGAWFAARLRYTRSCAVMSMVGYVLGLGDRHGENILFEEGTGGVIHVDFN-CLF  2304
             V+  P+   W  AR  + RSCA  S++ Y+LG GDRH +NIL ++ TG + H+DF  CL 
Sbjct  114   VKKSPDAEEWGEARKNFVRSCAGYSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCLP  173

Query  2305  DKGLTFEKPELVPFRLTQNMIDAFGAYGYNGPFRRTCEISLRLLRQNEDALMTVLETFLH  2364
             D G     PE VPFRLT+ M+ A G  G  G FR  CE +   LR+N + L  +L+  + 
Sbjct  174   DAGKDLPFPEKVPFRLTREMVYAMGPSGDEGLFRELCETAYEALRRNLNLLTNLLKLMVA  233

Query  2365  DPTTDF  2370
             D   D+
Sbjct  234   DGLPDW  239


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 185 bits (471),  Expect = 9e-52, Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 136/347 (39%), Gaps = 23/347 (7%)

Query  1558  PFAVEASWITGNWDKLRSYLQMRSPENTGDFNIGVGSALCALRLGNKTEFRNIIHDLQLS  1617
             P A EA+W  G WD +R YL +   +++ D       A+ AL      E    I   +  
Sbjct  2     PLAAEAAWRLGQWDLMREYLSL-MKKDSPDKAFF--EAILALHRNQFDEAERYIEKARQL  58

Query  1618  VAKSLTVNSVTSLQSCHDSILKLHALTEMELIS---DCEGTENSSLTSIHDVLNRRLDVL  1674
             +   L+  S  S    +  +++L  L E+E I       G  +  L S+      RL   
Sbjct  59    LDTELSALSGESYNRAYPLLVRLQQLAELEEIIQYKQKLGQSSEELKSLLQTWRNRLPGC  118

Query  1675  GGYIADKQYLLGLRRATME-LTHGFMESDIAGSWLTSARLSRKGNYTNQAYHSMLRAARL  1733
                +   Q +L +R   +  +   ++    A  WL  A L+RK    + A  ++L+    
Sbjct  119   QDDVEIWQDILTVRSLVLSPIEDVYLGGYHAEMWLKFANLARKSGRFSLAEKALLKLLGE  178

Query  1734  KDRS----ATIEHARLLWKDGHHRKAIQTLEGAIAANEFASDTSSSG----GLKN-EKQQ  1784
                         +A+ LW  G  ++A+  L   ++     +    SG       N E+  
Sbjct  179   DPEEWLPEVVYAYAKYLWPTGEQQEALLKLREFLSCYLQKNGELLSGLEVINPTNLEEFT  238

Query  1785  NLIAARAHLLLAKWTDRAGQ----TQSDVIVQRYREAIKLHSRWEKAHYYLGKHYDKILE  1840
              L+A R +LL  KW    GQ     +S+ I+Q Y  A +    W KA +       ++L 
Sbjct  239   ELLA-RCYLLKGKWQAALGQNWAEEKSEEILQAYLLATQFDPSWYKAWHTWALFNFEVLR  297

Query  1841  SEKAKPLGKEAQIYLSGEASKLVIDNYLRSLAHGNKYVFQSLPRILT  1887
              E+     +  +           ++ YLRSL+  ++   Q   R+LT
Sbjct  298   KEEQGKEEEGPEDL--SRYVVPAVEGYLRSLSLSSENSLQDTLRLLT  342


>CDD:462350 pfam08064, UME, UME (NUC010) domain.  This domain is characteristic 
of UVSB PI-3 kinase, MEI-41 and ESR1.
Length=102

 Score = 153 bits (389),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 49/102 (48%), Positives = 73/102 (72%), Gaps = 0/102 (0%)

Query  895  FIEEHVLGIITQFAHAINDFQIRQPLIEKRRNILAIGEMIKVARGHISSALPQICACLRS  954
            F+E H+LGI+ +F+  +ND + ++P+ EK+R + +I E+IK+    ISSALPQI ACL+S
Sbjct  1    FLENHILGILARFSDVLNDLRGKKPVEEKKRALRSIEELIKLMGSAISSALPQIMACLQS  60

Query  955  ALSIEELSDHAFSAWSVLVSSLHEEELEPLIDQTFSIVIRYW  996
            AL I EL + A S W   V +L EE+L PL+DQTF+ +++ W
Sbjct  61   ALEIPELREVALSCWDAFVKTLDEEDLGPLLDQTFAAILQLW  102



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3010173312


Query= TCONS_00029902

Length=730
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  224     4e-69
CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  127     1e-32


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 224 bits (574),  Expect = 4e-69, Method: Composition-based stats.
 Identities = 88/264 (33%), Positives = 130/264 (49%), Gaps = 27/264 (10%)

Query  429  IYNVLCKPKDDLRKDQRLMEFNNTINRFLKKDVESSKRRMYIKTYAVTPLNEECGLIEWV  488
             Y  + K  DDLR+D+ +++    ++  L KD    +R   +K Y+V PL  +CG+IEWV
Sbjct  1    GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  489  DNLRTLREIIIKLLKERGIMPNYNEIRHYLNEACSEASKLHL-FTTKVLMKFPPVLHEWF  547
             N  TL  I+ +  +         +I H          KL L F +++ +     L +WF
Sbjct  58   PNSETLAYILDEYGENGVPPTAMVKILHS----ALNYPKLKLEFESRISLPPKVGLLQWF  113

Query  548  VEMFPETGAWFAARLRYTRSCAVMSMVGYVLGLGDRHGENILFEEGTGGVIHVDFN-CLF  606
            V+  P+   W  AR  + RSCA  S++ Y+LG GDRH +NIL ++ TG + H+DF  CL 
Sbjct  114  VKKSPDAEEWGEARKNFVRSCAGYSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCLP  173

Query  607  DKGLTFEKPELVPFRLTQNMIDAFGAYGYNGLFPKSLKDEAFAQLLFTGPFRRTCEISLR  666
            D G     PE VPFRLT+ M+ A G             DE          FR  CE +  
Sbjct  174  DAGKDLPFPEKVPFRLTREMVYAMG----------PSGDEGL--------FRELCETAYE  215

Query  667  LLRQNEDALMTVLETFLHDPTTDF  690
             LR+N + L  +L+  + D   D+
Sbjct  216  ALRRNLNLLTNLLKLMVADGLPDW  239


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 127 bits (321),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 80/202 (40%), Gaps = 16/202 (8%)

Query  1    MESDIAGSWLTSARLSRKGNYTNQAYHSMLRAARLKDRS----ATIEHARLLWKDGHHRK  56
            +    A  WL  A L+RK    + A  ++L+                +A+ LW  G  ++
Sbjct  144  LGGYHAEMWLKFANLARKSGRFSLAEKALLKLLGEDPEEWLPEVVYAYAKYLWPTGEQQE  203

Query  57   AIQTLEGAIAANEFASDTSSSG----GLKN-EKQQNLIAARAHLLLAKWTDRAGQ----T  107
            A+  L   ++     +    SG       N E+   L+A R +LL  KW    GQ     
Sbjct  204  ALLKLREFLSCYLQKNGELLSGLEVINPTNLEEFTELLA-RCYLLKGKWQAALGQNWAEE  262

Query  108  QSDVIVQRYREAIKLHSRWEKAHYYLGKHYDKILESEKAKPLGKEAQIYLSGEASKLVID  167
            +S+ I+Q Y  A +    W KA +       ++L  E+     +  +           ++
Sbjct  263  KSEEILQAYLLATQFDPSWYKAWHTWALFNFEVLRKEEQGKEEEGPEDL--SRYVVPAVE  320

Query  168  NYLRSLAHGNKYVFQSLPRILT  189
             YLRSL+  ++   Q   R+LT
Sbjct  321  GYLRSLSLSSENSLQDTLRLLT  342



Lambda      K        H        a         alpha
   0.321    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 925476672


Query= TCONS_00029904

Length=2165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  184     1e-51
CDD:462350 pfam08064, UME, UME (NUC010) domain. This domain is ch...  152     1e-43


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 184 bits (469),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 136/347 (39%), Gaps = 23/347 (7%)

Query  1593  PFAVEASWITGNWDKLRSYLQMRSPENTGDFNIGVGSALCALRLGNKTEFRNIIHDLQLS  1652
             P A EA+W  G WD +R YL +   +++ D       A+ AL      E    I   +  
Sbjct  2     PLAAEAAWRLGQWDLMREYLSL-MKKDSPDKAFF--EAILALHRNQFDEAERYIEKARQL  58

Query  1653  VAKSLTVNSVTSLQSCHDSILKLHALTEMELIS---DCEGTENSSLTSIHDVLNRRLDVL  1709
             +   L+  S  S    +  +++L  L E+E I       G  +  L S+      RL   
Sbjct  59    LDTELSALSGESYNRAYPLLVRLQQLAELEEIIQYKQKLGQSSEELKSLLQTWRNRLPGC  118

Query  1710  GGYIADKQYLLGLRRATME-LTHGFMESDIAGSWLTSARLSRKGNYTNQAYHSMLRAARL  1768
                +   Q +L +R   +  +   ++    A  WL  A L+RK    + A  ++L+    
Sbjct  119   QDDVEIWQDILTVRSLVLSPIEDVYLGGYHAEMWLKFANLARKSGRFSLAEKALLKLLGE  178

Query  1769  KDRS----ATIEHARLLWKDGHHRKAIQTLEGAIAANEFASDTSSSG----GLKN-EKQQ  1819
                         +A+ LW  G  ++A+  L   ++     +    SG       N E+  
Sbjct  179   DPEEWLPEVVYAYAKYLWPTGEQQEALLKLREFLSCYLQKNGELLSGLEVINPTNLEEFT  238

Query  1820  NLIAARAHLLLAKWTDRAGQ----TQSDVIVQRYREAIKLHSRWEKAHYYLGKHYDKILE  1875
              L+A R +LL  KW    GQ     +S+ I+Q Y  A +    W KA +       ++L 
Sbjct  239   ELLA-RCYLLKGKWQAALGQNWAEEKSEEILQAYLLATQFDPSWYKAWHTWALFNFEVLR  297

Query  1876  SEKAKPLGKEAQIYLSGEASKLVIDNYLRSLAHGNKYVFQSLPRILT  1922
              E+     +  +           ++ YLRSL+  ++   Q   R+LT
Sbjct  298   KEEQGKEEEGPEDL--SRYVVPAVEGYLRSLSLSSENSLQDTLRLLT  342


>CDD:462350 pfam08064, UME, UME (NUC010) domain.  This domain is characteristic 
of UVSB PI-3 kinase, MEI-41 and ESR1.
Length=102

 Score = 152 bits (387),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 49/102 (48%), Positives = 73/102 (72%), Gaps = 0/102 (0%)

Query  908   FIEEHVLGIITQFAHAINDFQIRQPLIEKRRNILAIGEMIKVARGHISSALPQICACLRS  967
             F+E H+LGI+ +F+  +ND + ++P+ EK+R + +I E+IK+    ISSALPQI ACL+S
Sbjct  1     FLENHILGILARFSDVLNDLRGKKPVEEKKRALRSIEELIKLMGSAISSALPQIMACLQS  60

Query  968   ALSIEELSDHAFSAWSVLVSSLHEEELEPLIDQTFSIVIRYW  1009
             AL I EL + A S W   V +L EE+L PL+DQTF+ +++ W
Sbjct  61    ALEIPELREVALSCWDAFVKTLDEEDLGPLLDQTFAAILQLW  102



Lambda      K        H        a         alpha
   0.321    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2719703904


Query= TCONS_00029903

Length=1226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  182     4e-51
CDD:462350 pfam08064, UME, UME (NUC010) domain. This domain is ch...  103     7e-27


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 182 bits (463),  Expect = 4e-51, Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 136/347 (39%), Gaps = 23/347 (7%)

Query  648  PFAVEASWITGNWDKLRSYLQMRSPENTGDFNIGVGSALCALRLGNKTEFRNIIHDLQLS  707
            P A EA+W  G WD +R YL +   +++ D       A+ AL      E    I   +  
Sbjct  2    PLAAEAAWRLGQWDLMREYLSL-MKKDSPDKAFF--EAILALHRNQFDEAERYIEKARQL  58

Query  708  VAKSLTVNSVTSLQSCHDSILKLHALTEMELIS---DCEGTENSSLTSIHDVLNRRLDVL  764
            +   L+  S  S    +  +++L  L E+E I       G  +  L S+      RL   
Sbjct  59   LDTELSALSGESYNRAYPLLVRLQQLAELEEIIQYKQKLGQSSEELKSLLQTWRNRLPGC  118

Query  765  GGYIADKQYLLGLRRATME-LTHGFMESDIAGSWLTSARLSRKGNYTNQAYHSMLRAARL  823
               +   Q +L +R   +  +   ++    A  WL  A L+RK    + A  ++L+    
Sbjct  119  QDDVEIWQDILTVRSLVLSPIEDVYLGGYHAEMWLKFANLARKSGRFSLAEKALLKLLGE  178

Query  824  KDRS----ATIEHARLLWKDGHHRKAIQTLEGAIAANEFASDTSSSG----GLKN-EKQQ  874
                        +A+ LW  G  ++A+  L   ++     +    SG       N E+  
Sbjct  179  DPEEWLPEVVYAYAKYLWPTGEQQEALLKLREFLSCYLQKNGELLSGLEVINPTNLEEFT  238

Query  875  NLIAARAHLLLAKWTDRAGQ----TQSDVIVQRYREAIKLHSRWEKAHYYLGKHYDKILE  930
             L+A R +LL  KW    GQ     +S+ I+Q Y  A +    W KA +       ++L 
Sbjct  239  ELLA-RCYLLKGKWQAALGQNWAEEKSEEILQAYLLATQFDPSWYKAWHTWALFNFEVLR  297

Query  931  SEKAKPLGKEAQIYLSGEASKLVIDNYLRSLAHGNKYVFQSLPRILT  977
             E+     +  +           ++ YLRSL+  ++   Q   R+LT
Sbjct  298  KEEQGKEEEGPEDL--SRYVVPAVEGYLRSLSLSSENSLQDTLRLLT  342


>CDD:462350 pfam08064, UME, UME (NUC010) domain.  This domain is characteristic 
of UVSB PI-3 kinase, MEI-41 and ESR1.
Length=102

 Score = 103 bits (260),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 0/64 (0%)

Query  1    MIKVARGHISSALPQICACLRSALSIEELSDHAFSAWSVLVSSLHEEELEPLIDQTFSIV  60
            +IK+    ISSALPQI ACL+SAL I EL + A S W   V +L EE+L PL+DQTF+ +
Sbjct  39   LIKLMGSAISSALPQIMACLQSALEIPELREVALSCWDAFVKTLDEEDLGPLLDQTFAAI  98

Query  61   IRYW  64
            ++ W
Sbjct  99   LQLW  102



Lambda      K        H        a         alpha
   0.319    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0720    0.140     1.90     42.6     43.6 

Effective search space used: 1576352702


Query= TCONS_00034675

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  229     5e-73


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 229 bits (586),  Expect = 5e-73, Method: Composition-based stats.
 Identities = 88/246 (36%), Positives = 130/246 (53%), Gaps = 9/246 (4%)

Query  203  IYNVLCKPKDDLRKDQRLMEFNNTINRFLKKDVESSKRRMYIKTYAVTPLNEECGLIEWV  262
             Y  + K  DDLR+D+ +++    ++  L KD    +R   +K Y+V PL  +CG+IEWV
Sbjct  1    GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  263  DNLRTLREIIIKLLKERGIMPNYNEIRHYLNEACSEASKLHL-FTTKVLMKFPPVLHEWF  321
             N  TL  I+ +  +         +I H          KL L F +++ +     L +WF
Sbjct  58   PNSETLAYILDEYGENGVPPTAMVKILHS----ALNYPKLKLEFESRISLPPKVGLLQWF  113

Query  322  VEMFPETGAWFAARLRYTRSCAVMSMVGYVLGLGDRHGENILFEEGTGGVIHVDFN-CLF  380
            V+  P+   W  AR  + RSCA  S++ Y+LG GDRH +NIL ++ TG + H+DF  CL 
Sbjct  114  VKKSPDAEEWGEARKNFVRSCAGYSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCLP  173

Query  381  DKGLTFEKPELVPFRLTQNMIDAFGAYGYNGPFRRTCEISLRLLRQNEDALMTVLETFLH  440
            D G     PE VPFRLT+ M+ A G  G  G FR  CE +   LR+N + L  +L+  + 
Sbjct  174  DAGKDLPFPEKVPFRLTREMVYAMGPSGDEGLFRELCETAYEALRRNLNLLTNLLKLMVA  233

Query  441  DPTTDF  446
            D   D+
Sbjct  234  DGLPDW  239



Lambda      K        H        a         alpha
   0.322    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00034674

Length=1782
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  184     1e-51
CDD:462350 pfam08064, UME, UME (NUC010) domain. This domain is ch...  154     3e-44


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 184 bits (469),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 136/347 (39%), Gaps = 23/347 (7%)

Query  1169  PFAVEASWITGNWDKLRSYLQMRSPENTGDFNIGVGSALCALRLGNKTEFRNIIHDLQLS  1228
             P A EA+W  G WD +R YL +   +++ D       A+ AL      E    I   +  
Sbjct  2     PLAAEAAWRLGQWDLMREYLSL-MKKDSPDKAFF--EAILALHRNQFDEAERYIEKARQL  58

Query  1229  VAKSLTVNSVTSLQSCHDSILKLHALTEMELIS---DCEGTENSSLTSIHDVLNRRLDVL  1285
             +   L+  S  S    +  +++L  L E+E I       G  +  L S+      RL   
Sbjct  59    LDTELSALSGESYNRAYPLLVRLQQLAELEEIIQYKQKLGQSSEELKSLLQTWRNRLPGC  118

Query  1286  GGYIADKQYLLGLRRATME-LTHGFMESDIAGSWLTSARLSRKGNYTNQAYHSMLRAARL  1344
                +   Q +L +R   +  +   ++    A  WL  A L+RK    + A  ++L+    
Sbjct  119   QDDVEIWQDILTVRSLVLSPIEDVYLGGYHAEMWLKFANLARKSGRFSLAEKALLKLLGE  178

Query  1345  KDRS----ATIEHARLLWKDGHHRKAIQTLEGAIAANEFASDTSSSG----GLKN-EKQQ  1395
                         +A+ LW  G  ++A+  L   ++     +    SG       N E+  
Sbjct  179   DPEEWLPEVVYAYAKYLWPTGEQQEALLKLREFLSCYLQKNGELLSGLEVINPTNLEEFT  238

Query  1396  NLIAARAHLLLAKWTDRAGQ----TQSDVIVQRYREAIKLHSRWEKAHYYLGKHYDKILE  1451
              L+A R +LL  KW    GQ     +S+ I+Q Y  A +    W KA +       ++L 
Sbjct  239   ELLA-RCYLLKGKWQAALGQNWAEEKSEEILQAYLLATQFDPSWYKAWHTWALFNFEVLR  297

Query  1452  SEKAKPLGKEAQIYLSGEASKLVIDNYLRSLAHGNKYVFQSLPRILT  1498
              E+     +  +           ++ YLRSL+  ++   Q   R+LT
Sbjct  298   KEEQGKEEEGPEDL--SRYVVPAVEGYLRSLSLSSENSLQDTLRLLT  342


>CDD:462350 pfam08064, UME, UME (NUC010) domain.  This domain is characteristic 
of UVSB PI-3 kinase, MEI-41 and ESR1.
Length=102

 Score = 154 bits (391),  Expect = 3e-44, Method: Composition-based stats.
 Identities = 49/102 (48%), Positives = 73/102 (72%), Gaps = 0/102 (0%)

Query  484  FIEEHVLGIITQFAHAINDFQIRQPLIEKRRNILAIGEMIKVARGHISSALPQICACLRS  543
            F+E H+LGI+ +F+  +ND + ++P+ EK+R + +I E+IK+    ISSALPQI ACL+S
Sbjct  1    FLENHILGILARFSDVLNDLRGKKPVEEKKRALRSIEELIKLMGSAISSALPQIMACLQS  60

Query  544  ALSIEELSDHAFSAWSVLVSSLHEEELEPLIDQTFSIVIRYW  585
            AL I EL + A S W   V +L EE+L PL+DQTF+ +++ W
Sbjct  61   ALEIPELREVALSCWDAFVKTLDEEDLGPLLDQTFAAILQLW  102



Lambda      K        H        a         alpha
   0.320    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2249378968


Query= TCONS_00029905

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  227     3e-73
CDD:460514 pfam02260, FATC, FATC domain. The FATC domain is named...  66.6    5e-15


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 227 bits (581),  Expect = 3e-73, Method: Composition-based stats.
 Identities = 88/246 (36%), Positives = 130/246 (53%), Gaps = 9/246 (4%)

Query  109  IYNVLCKPKDDLRKDQRLMEFNNTINRFLKKDVESSKRRMYIKTYAVTPLNEECGLIEWV  168
             Y  + K  DDLR+D+ +++    ++  L KD    +R   +K Y+V PL  +CG+IEWV
Sbjct  1    GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  169  DNLRTLREIIIKLLKERGIMPNYNEIRHYLNEACSEASKLHL-FTTKVLMKFPPVLHEWF  227
             N  TL  I+ +  +         +I H          KL L F +++ +     L +WF
Sbjct  58   PNSETLAYILDEYGENGVPPTAMVKILHS----ALNYPKLKLEFESRISLPPKVGLLQWF  113

Query  228  VEMFPETGAWFAARLRYTRSCAVMSMVGYVLGLGDRHGENILFEEGTGGVIHVDFN-CLF  286
            V+  P+   W  AR  + RSCA  S++ Y+LG GDRH +NIL ++ TG + H+DF  CL 
Sbjct  114  VKKSPDAEEWGEARKNFVRSCAGYSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCLP  173

Query  287  DKGLTFEKPELVPFRLTQNMIDAFGAYGYNGPFRRTCEISLRLLRQNEDALMTVLETFLH  346
            D G     PE VPFRLT+ M+ A G  G  G FR  CE +   LR+N + L  +L+  + 
Sbjct  174  DAGKDLPFPEKVPFRLTREMVYAMGPSGDEGLFRELCETAYEALRRNLNLLTNLLKLMVA  233

Query  347  DPTTDF  352
            D   D+
Sbjct  234  DGLPDW  239


>CDD:460514 pfam02260, FATC, FATC domain.  The FATC domain is named after 
FRAP, ATM, TRRAP C-terminal. The solution structure of the 
FATC domain suggests it plays a role in redox-dependent structural 
and cellular stability.
Length=32

 Score = 66.6 bits (164),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 22/32 (69%), Positives = 26/32 (81%), Gaps = 0/32 (0%)

Query  388  PLSVDGHVDELITQATDKRNLAAMYIGWCAFF  419
            PLSV+G VDELI +ATD  NLA MYIGWC ++
Sbjct  1    PLSVEGQVDELIQEATDPENLAQMYIGWCPWW  32



Lambda      K        H        a         alpha
   0.323    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00034676

Length=2455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  225     4e-67
CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  185     7e-52
CDD:462350 pfam08064, UME, UME (NUC010) domain. This domain is ch...  153     6e-44


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 225 bits (576),  Expect = 4e-67, Method: Composition-based stats.
 Identities = 88/264 (33%), Positives = 130/264 (49%), Gaps = 27/264 (10%)

Query  2156  IYNVLCKPKDDLRKDQRLMEFNNTINRFLKKDVESSKRRMYIKTYAVTPLNEECGLIEWV  2215
              Y  + K  DDLR+D+ +++    ++  L KD    +R   +K Y+V PL  +CG+IEWV
Sbjct  1     GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  2216  DNLRTLREIIIKLLKERGIMPNYNEIRHYLNEACSEASKLHL-FTTKVLMKFPPVLHEWF  2274
              N  TL  I+ +  +         +I H          KL L F +++ +     L +WF
Sbjct  58    PNSETLAYILDEYGENGVPPTAMVKILHS----ALNYPKLKLEFESRISLPPKVGLLQWF  113

Query  2275  VEMFPETGAWFAARLRYTRSCAVMSMVGYVLGLGDRHGENILFEEGTGGVIHVDFN-CLF  2333
             V+  P+   W  AR  + RSCA  S++ Y+LG GDRH +NIL ++ TG + H+DF  CL 
Sbjct  114   VKKSPDAEEWGEARKNFVRSCAGYSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCLP  173

Query  2334  DKGLTFEKPELVPFRLTQNMIDAFGAYGYNGLFPKSLKDEAFAQLLFTGPFRRTCEISLR  2393
             D G     PE VPFRLT+ M+ A G             DE          FR  CE +  
Sbjct  174   DAGKDLPFPEKVPFRLTREMVYAMG----------PSGDEGL--------FRELCETAYE  215

Query  2394  LLRQNEDALMTVLETFLHDPTTDF  2417
              LR+N + L  +L+  + D   D+
Sbjct  216   ALRRNLNLLTNLLKLMVADGLPDW  239


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 185 bits (472),  Expect = 7e-52, Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 136/347 (39%), Gaps = 23/347 (7%)

Query  1593  PFAVEASWITGNWDKLRSYLQMRSPENTGDFNIGVGSALCALRLGNKTEFRNIIHDLQLS  1652
             P A EA+W  G WD +R YL +   +++ D       A+ AL      E    I   +  
Sbjct  2     PLAAEAAWRLGQWDLMREYLSL-MKKDSPDKAFF--EAILALHRNQFDEAERYIEKARQL  58

Query  1653  VAKSLTVNSVTSLQSCHDSILKLHALTEMELIS---DCEGTENSSLTSIHDVLNRRLDVL  1709
             +   L+  S  S    +  +++L  L E+E I       G  +  L S+      RL   
Sbjct  59    LDTELSALSGESYNRAYPLLVRLQQLAELEEIIQYKQKLGQSSEELKSLLQTWRNRLPGC  118

Query  1710  GGYIADKQYLLGLRRATME-LTHGFMESDIAGSWLTSARLSRKGNYTNQAYHSMLRAARL  1768
                +   Q +L +R   +  +   ++    A  WL  A L+RK    + A  ++L+    
Sbjct  119   QDDVEIWQDILTVRSLVLSPIEDVYLGGYHAEMWLKFANLARKSGRFSLAEKALLKLLGE  178

Query  1769  KDRS----ATIEHARLLWKDGHHRKAIQTLEGAIAANEFASDTSSSG----GLKN-EKQQ  1819
                         +A+ LW  G  ++A+  L   ++     +    SG       N E+  
Sbjct  179   DPEEWLPEVVYAYAKYLWPTGEQQEALLKLREFLSCYLQKNGELLSGLEVINPTNLEEFT  238

Query  1820  NLIAARAHLLLAKWTDRAGQ----TQSDVIVQRYREAIKLHSRWEKAHYYLGKHYDKILE  1875
              L+A R +LL  KW    GQ     +S+ I+Q Y  A +    W KA +       ++L 
Sbjct  239   ELLA-RCYLLKGKWQAALGQNWAEEKSEEILQAYLLATQFDPSWYKAWHTWALFNFEVLR  297

Query  1876  SEKAKPLGKEAQIYLSGEASKLVIDNYLRSLAHGNKYVFQSLPRILT  1922
              E+     +  +           ++ YLRSL+  ++   Q   R+LT
Sbjct  298   KEEQGKEEEGPEDL--SRYVVPAVEGYLRSLSLSSENSLQDTLRLLT  342


>CDD:462350 pfam08064, UME, UME (NUC010) domain.  This domain is characteristic 
of UVSB PI-3 kinase, MEI-41 and ESR1.
Length=102

 Score = 153 bits (389),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 49/102 (48%), Positives = 73/102 (72%), Gaps = 0/102 (0%)

Query  908   FIEEHVLGIITQFAHAINDFQIRQPLIEKRRNILAIGEMIKVARGHISSALPQICACLRS  967
             F+E H+LGI+ +F+  +ND + ++P+ EK+R + +I E+IK+    ISSALPQI ACL+S
Sbjct  1     FLENHILGILARFSDVLNDLRGKKPVEEKKRALRSIEELIKLMGSAISSALPQIMACLQS  60

Query  968   ALSIEELSDHAFSAWSVLVSSLHEEELEPLIDQTFSIVIRYW  1009
             AL I EL + A S W   V +L EE+L PL+DQTF+ +++ W
Sbjct  61    ALEIPELREVALSCWDAFVKTLDEEDLGPLLDQTFAAILQLW  102



Lambda      K        H        a         alpha
   0.321    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3054306944


Query= TCONS_00034677

Length=2348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  184     1e-51
CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  165     4e-46
CDD:462350 pfam08064, UME, UME (NUC010) domain. This domain is ch...  153     8e-44


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 184 bits (470),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 136/347 (39%), Gaps = 23/347 (7%)

Query  1593  PFAVEASWITGNWDKLRSYLQMRSPENTGDFNIGVGSALCALRLGNKTEFRNIIHDLQLS  1652
             P A EA+W  G WD +R YL +   +++ D       A+ AL      E    I   +  
Sbjct  2     PLAAEAAWRLGQWDLMREYLSL-MKKDSPDKAFF--EAILALHRNQFDEAERYIEKARQL  58

Query  1653  VAKSLTVNSVTSLQSCHDSILKLHALTEMELIS---DCEGTENSSLTSIHDVLNRRLDVL  1709
             +   L+  S  S    +  +++L  L E+E I       G  +  L S+      RL   
Sbjct  59    LDTELSALSGESYNRAYPLLVRLQQLAELEEIIQYKQKLGQSSEELKSLLQTWRNRLPGC  118

Query  1710  GGYIADKQYLLGLRRATME-LTHGFMESDIAGSWLTSARLSRKGNYTNQAYHSMLRAARL  1768
                +   Q +L +R   +  +   ++    A  WL  A L+RK    + A  ++L+    
Sbjct  119   QDDVEIWQDILTVRSLVLSPIEDVYLGGYHAEMWLKFANLARKSGRFSLAEKALLKLLGE  178

Query  1769  KDRS----ATIEHARLLWKDGHHRKAIQTLEGAIAANEFASDTSSSG----GLKN-EKQQ  1819
                         +A+ LW  G  ++A+  L   ++     +    SG       N E+  
Sbjct  179   DPEEWLPEVVYAYAKYLWPTGEQQEALLKLREFLSCYLQKNGELLSGLEVINPTNLEEFT  238

Query  1820  NLIAARAHLLLAKWTDRAGQ----TQSDVIVQRYREAIKLHSRWEKAHYYLGKHYDKILE  1875
              L+A R +LL  KW    GQ     +S+ I+Q Y  A +    W KA +       ++L 
Sbjct  239   ELLA-RCYLLKGKWQAALGQNWAEEKSEEILQAYLLATQFDPSWYKAWHTWALFNFEVLR  297

Query  1876  SEKAKPLGKEAQIYLSGEASKLVIDNYLRSLAHGNKYVFQSLPRILT  1922
              E+     +  +           ++ YLRSL+  ++   Q   R+LT
Sbjct  298   KEEQGKEEEGPEDL--SRYVVPAVEGYLRSLSLSSENSLQDTLRLLT  342


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 165 bits (419),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 64/183 (35%), Positives = 97/183 (53%), Gaps = 9/183 (5%)

Query  2162  IYNVLCKPKDDLRKDQRLMEFNNTINRFLKKDVESSKRRMYIKTYAVTPLNEECGLIEWV  2221
              Y  + K  DDLR+D+ +++    ++  L KD    +R   +K Y+V PL  +CG+IEWV
Sbjct  1     GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  2222  DNLRTLREIIIKLLKERGIMPNYNEIRHYLNEACSEASKLHL-FTTKVLMKFPPVLHEWF  2280
              N  TL  I+ +  +         +I H          KL L F +++ +     L +WF
Sbjct  58    PNSETLAYILDEYGENGVPPTAMVKILHS----ALNYPKLKLEFESRISLPPKVGLLQWF  113

Query  2281  VEMFPETGAWFAARLRYTRSCAVMSMVGYVLGLGDRHGENILFEEGTGGVIHVDFN-CLF  2339
             V+  P+   W  AR  + RSCA  S++ Y+LG GDRH +NIL ++ TG + H+DF  CL 
Sbjct  114   VKKSPDAEEWGEARKNFVRSCAGYSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCLP  173

Query  2340  DKG  2342
             D G
Sbjct  174   DAG  176


>CDD:462350 pfam08064, UME, UME (NUC010) domain.  This domain is characteristic 
of UVSB PI-3 kinase, MEI-41 and ESR1.
Length=102

 Score = 153 bits (388),  Expect = 8e-44, Method: Composition-based stats.
 Identities = 49/102 (48%), Positives = 73/102 (72%), Gaps = 0/102 (0%)

Query  908   FIEEHVLGIITQFAHAINDFQIRQPLIEKRRNILAIGEMIKVARGHISSALPQICACLRS  967
             F+E H+LGI+ +F+  +ND + ++P+ EK+R + +I E+IK+    ISSALPQI ACL+S
Sbjct  1     FLENHILGILARFSDVLNDLRGKKPVEEKKRALRSIEELIKLMGSAISSALPQIMACLQS  60

Query  968   ALSIEELSDHAFSAWSVLVSSLHEEELEPLIDQTFSIVIRYW  1009
             AL I EL + A S W   V +L EE+L PL+DQTF+ +++ W
Sbjct  61    ALEIPELREVALSCWDAFVKTLDEEDLGPLLDQTFAAILQLW  102



Lambda      K        H        a         alpha
   0.321    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2915415808


Query= TCONS_00034679

Length=953
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  127     2e-32
CDD:462350 pfam08064, UME, UME (NUC010) domain. This domain is ch...  103     8e-27


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 127 bits (321),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 66/281 (23%), Positives = 110/281 (39%), Gaps = 21/281 (7%)

Query  648  PFAVEASWITGNWDKLRSYLQMRSPENTGDFNIGVGSALCALRLGNKTEFRNIIHDLQLS  707
            P A EA+W  G WD +R YL +   +++ D       A+ AL      E    I   +  
Sbjct  2    PLAAEAAWRLGQWDLMREYLSL-MKKDSPDKAFF--EAILALHRNQFDEAERYIEKARQL  58

Query  708  VAKSLTVNSVTSLQSCHDSILKLHALTEMELIS---DCEGTENSSLTSIHDVLNRRLDVL  764
            +   L+  S  S    +  +++L  L E+E I       G  +  L S+      RL   
Sbjct  59   LDTELSALSGESYNRAYPLLVRLQQLAELEEIIQYKQKLGQSSEELKSLLQTWRNRLPGC  118

Query  765  GGYIADKQYLLGLRRATME-LTHGFMESDIAGSWLTSARLSRKGNYTNQAYHSMLRAARL  823
               +   Q +L +R   +  +   ++    A  WL  A L+RK    + A  ++L+    
Sbjct  119  QDDVEIWQDILTVRSLVLSPIEDVYLGGYHAEMWLKFANLARKSGRFSLAEKALLKLLGE  178

Query  824  KDRS----ATIEHARLLWKDGHHRKAIQTLEGAIAANEFASDTSSSG----GLKN-EKQQ  874
                        +A+ LW  G  ++A+  L   ++     +    SG       N E+  
Sbjct  179  DPEEWLPEVVYAYAKYLWPTGEQQEALLKLREFLSCYLQKNGELLSGLEVINPTNLEEFT  238

Query  875  NLIAARAHLLLAKWTDRAGQ----TQSDVIVQRYREAIKLH  911
             L+ AR +LL  KW    GQ     +S+ I+Q Y  A +  
Sbjct  239  ELL-ARCYLLKGKWQAALGQNWAEEKSEEILQAYLLATQFD  278


>CDD:462350 pfam08064, UME, UME (NUC010) domain.  This domain is characteristic 
of UVSB PI-3 kinase, MEI-41 and ESR1.
Length=102

 Score = 103 bits (259),  Expect = 8e-27, Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 0/64 (0%)

Query  1    MIKVARGHISSALPQICACLRSALSIEELSDHAFSAWSVLVSSLHEEELEPLIDQTFSIV  60
            +IK+    ISSALPQI ACL+SAL I EL + A S W   V +L EE+L PL+DQTF+ +
Sbjct  39   LIKLMGSAISSALPQIMACLQSALEIPELREVALSCWDAFVKTLDEEDLGPLLDQTFAAI  98

Query  61   IRYW  64
            ++ W
Sbjct  99   LQLW  102



Lambda      K        H        a         alpha
   0.319    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1213405732


Query= TCONS_00034678

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  221     1e-69


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 221 bits (565),  Expect = 1e-69, Method: Composition-based stats.
 Identities = 88/264 (33%), Positives = 130/264 (49%), Gaps = 27/264 (10%)

Query  203  IYNVLCKPKDDLRKDQRLMEFNNTINRFLKKDVESSKRRMYIKTYAVTPLNEECGLIEWV  262
             Y  + K  DDLR+D+ +++    ++  L KD    +R   +K Y+V PL  +CG+IEWV
Sbjct  1    GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  263  DNLRTLREIIIKLLKERGIMPNYNEIRHYLNEACSEASKLHL-FTTKVLMKFPPVLHEWF  321
             N  TL  I+ +  +         +I H          KL L F +++ +     L +WF
Sbjct  58   PNSETLAYILDEYGENGVPPTAMVKILHS----ALNYPKLKLEFESRISLPPKVGLLQWF  113

Query  322  VEMFPETGAWFAARLRYTRSCAVMSMVGYVLGLGDRHGENILFEEGTGGVIHVDFN-CLF  380
            V+  P+   W  AR  + RSCA  S++ Y+LG GDRH +NIL ++ TG + H+DF  CL 
Sbjct  114  VKKSPDAEEWGEARKNFVRSCAGYSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCLP  173

Query  381  DKGLTFEKPELVPFRLTQNMIDAFGAYGYNGLFPKSLKDEAFAQLLFTGPFRRTCEISLR  440
            D G     PE VPFRLT+ M+ A G             DE          FR  CE +  
Sbjct  174  DAGKDLPFPEKVPFRLTREMVYAMG----------PSGDEGL--------FRELCETAYE  215

Query  441  LLRQNEDALMTVLETFLHDPTTDF  464
             LR+N + L  +L+  + D   D+
Sbjct  216  ALRRNLNLLTNLLKLMVADGLPDW  239



Lambda      K        H        a         alpha
   0.322    0.138    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 648020248


Query= TCONS_00029906

Length=2449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  225     4e-67
CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  185     9e-52
CDD:462350 pfam08064, UME, UME (NUC010) domain. This domain is ch...  153     6e-44
CDD:460514 pfam02260, FATC, FATC domain. The FATC domain is named...  65.9    5e-14


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 225 bits (576),  Expect = 4e-67, Method: Composition-based stats.
 Identities = 88/264 (33%), Positives = 130/264 (49%), Gaps = 27/264 (10%)

Query  2121  IYNVLCKPKDDLRKDQRLMEFNNTINRFLKKDVESSKRRMYIKTYAVTPLNEECGLIEWV  2180
              Y  + K  DDLR+D+ +++    ++  L KD    +R   +K Y+V PL  +CG+IEWV
Sbjct  1     GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  2181  DNLRTLREIIIKLLKERGIMPNYNEIRHYLNEACSEASKLHL-FTTKVLMKFPPVLHEWF  2239
              N  TL  I+ +  +         +I H          KL L F +++ +     L +WF
Sbjct  58    PNSETLAYILDEYGENGVPPTAMVKILHS----ALNYPKLKLEFESRISLPPKVGLLQWF  113

Query  2240  VEMFPETGAWFAARLRYTRSCAVMSMVGYVLGLGDRHGENILFEEGTGGVIHVDFN-CLF  2298
             V+  P+   W  AR  + RSCA  S++ Y+LG GDRH +NIL ++ TG + H+DF  CL 
Sbjct  114   VKKSPDAEEWGEARKNFVRSCAGYSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCLP  173

Query  2299  DKGLTFEKPELVPFRLTQNMIDAFGAYGYNGLFPKSLKDEAFAQLLFTGPFRRTCEISLR  2358
             D G     PE VPFRLT+ M+ A G             DE          FR  CE +  
Sbjct  174   DAGKDLPFPEKVPFRLTREMVYAMG----------PSGDEGL--------FRELCETAYE  215

Query  2359  LLRQNEDALMTVLETFLHDPTTDF  2382
              LR+N + L  +L+  + D   D+
Sbjct  216   ALRRNLNLLTNLLKLMVADGLPDW  239


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 185 bits (471),  Expect = 9e-52, Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 136/347 (39%), Gaps = 23/347 (7%)

Query  1558  PFAVEASWITGNWDKLRSYLQMRSPENTGDFNIGVGSALCALRLGNKTEFRNIIHDLQLS  1617
             P A EA+W  G WD +R YL +   +++ D       A+ AL      E    I   +  
Sbjct  2     PLAAEAAWRLGQWDLMREYLSL-MKKDSPDKAFF--EAILALHRNQFDEAERYIEKARQL  58

Query  1618  VAKSLTVNSVTSLQSCHDSILKLHALTEMELIS---DCEGTENSSLTSIHDVLNRRLDVL  1674
             +   L+  S  S    +  +++L  L E+E I       G  +  L S+      RL   
Sbjct  59    LDTELSALSGESYNRAYPLLVRLQQLAELEEIIQYKQKLGQSSEELKSLLQTWRNRLPGC  118

Query  1675  GGYIADKQYLLGLRRATME-LTHGFMESDIAGSWLTSARLSRKGNYTNQAYHSMLRAARL  1733
                +   Q +L +R   +  +   ++    A  WL  A L+RK    + A  ++L+    
Sbjct  119   QDDVEIWQDILTVRSLVLSPIEDVYLGGYHAEMWLKFANLARKSGRFSLAEKALLKLLGE  178

Query  1734  KDRS----ATIEHARLLWKDGHHRKAIQTLEGAIAANEFASDTSSSG----GLKN-EKQQ  1784
                         +A+ LW  G  ++A+  L   ++     +    SG       N E+  
Sbjct  179   DPEEWLPEVVYAYAKYLWPTGEQQEALLKLREFLSCYLQKNGELLSGLEVINPTNLEEFT  238

Query  1785  NLIAARAHLLLAKWTDRAGQ----TQSDVIVQRYREAIKLHSRWEKAHYYLGKHYDKILE  1840
              L+A R +LL  KW    GQ     +S+ I+Q Y  A +    W KA +       ++L 
Sbjct  239   ELLA-RCYLLKGKWQAALGQNWAEEKSEEILQAYLLATQFDPSWYKAWHTWALFNFEVLR  297

Query  1841  SEKAKPLGKEAQIYLSGEASKLVIDNYLRSLAHGNKYVFQSLPRILT  1887
              E+     +  +           ++ YLRSL+  ++   Q   R+LT
Sbjct  298   KEEQGKEEEGPEDL--SRYVVPAVEGYLRSLSLSSENSLQDTLRLLT  342


>CDD:462350 pfam08064, UME, UME (NUC010) domain.  This domain is characteristic 
of UVSB PI-3 kinase, MEI-41 and ESR1.
Length=102

 Score = 153 bits (390),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 49/102 (48%), Positives = 73/102 (72%), Gaps = 0/102 (0%)

Query  895  FIEEHVLGIITQFAHAINDFQIRQPLIEKRRNILAIGEMIKVARGHISSALPQICACLRS  954
            F+E H+LGI+ +F+  +ND + ++P+ EK+R + +I E+IK+    ISSALPQI ACL+S
Sbjct  1    FLENHILGILARFSDVLNDLRGKKPVEEKKRALRSIEELIKLMGSAISSALPQIMACLQS  60

Query  955  ALSIEELSDHAFSAWSVLVSSLHEEELEPLIDQTFSIVIRYW  996
            AL I EL + A S W   V +L EE+L PL+DQTF+ +++ W
Sbjct  61   ALEIPELREVALSCWDAFVKTLDEEDLGPLLDQTFAAILQLW  102


>CDD:460514 pfam02260, FATC, FATC domain.  The FATC domain is named after 
FRAP, ATM, TRRAP C-terminal. The solution structure of the 
FATC domain suggests it plays a role in redox-dependent structural 
and cellular stability.
Length=32

 Score = 65.9 bits (162),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 22/32 (69%), Positives = 26/32 (81%), Gaps = 0/32 (0%)

Query  2418  PLSVDGHVDELITQATDKRNLAAMYIGWCAFF  2449
             PLSV+G VDELI +ATD  NLA MYIGWC ++
Sbjct  1     PLSVEGQVDELIQEATDPENLAQMYIGWCPWW  32



Lambda      K        H        a         alpha
   0.321    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0652    0.140     1.90     42.6     43.6 

Effective search space used: 3046518656


Query= TCONS_00029907

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  226     2e-73


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 226 bits (579),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 88/246 (36%), Positives = 130/246 (53%), Gaps = 9/246 (4%)

Query  109  IYNVLCKPKDDLRKDQRLMEFNNTINRFLKKDVESSKRRMYIKTYAVTPLNEECGLIEWV  168
             Y  + K  DDLR+D+ +++    ++  L KD    +R   +K Y+V PL  +CG+IEWV
Sbjct  1    GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  169  DNLRTLREIIIKLLKERGIMPNYNEIRHYLNEACSEASKLHL-FTTKVLMKFPPVLHEWF  227
             N  TL  I+ +  +         +I H          KL L F +++ +     L +WF
Sbjct  58   PNSETLAYILDEYGENGVPPTAMVKILHS----ALNYPKLKLEFESRISLPPKVGLLQWF  113

Query  228  VEMFPETGAWFAARLRYTRSCAVMSMVGYVLGLGDRHGENILFEEGTGGVIHVDFN-CLF  286
            V+  P+   W  AR  + RSCA  S++ Y+LG GDRH +NIL ++ TG + H+DF  CL 
Sbjct  114  VKKSPDAEEWGEARKNFVRSCAGYSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCLP  173

Query  287  DKGLTFEKPELVPFRLTQNMIDAFGAYGYNGPFRRTCEISLRLLRQNEDALMTVLETFLH  346
            D G     PE VPFRLT+ M+ A G  G  G FR  CE +   LR+N + L  +L+  + 
Sbjct  174  DAGKDLPFPEKVPFRLTREMVYAMGPSGDEGLFRELCETAYEALRRNLNLLTNLLKLMVA  233

Query  347  DPTTDF  352
            D   D+
Sbjct  234  DGLPDW  239



Lambda      K        H        a         alpha
   0.323    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00034681

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  232     3e-71
CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  165     9e-46


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 232 bits (594),  Expect = 3e-71, Method: Composition-based stats.
 Identities = 88/246 (36%), Positives = 130/246 (53%), Gaps = 9/246 (4%)

Query  543  IYNVLCKPKDDLRKDQRLMEFNNTINRFLKKDVESSKRRMYIKTYAVTPLNEECGLIEWV  602
             Y  + K  DDLR+D+ +++    ++  L KD    +R   +K Y+V PL  +CG+IEWV
Sbjct  1    GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  603  DNLRTLREIIIKLLKERGIMPNYNEIRHYLNEACSEASKLHL-FTTKVLMKFPPVLHEWF  661
             N  TL  I+ +  +         +I H          KL L F +++ +     L +WF
Sbjct  58   PNSETLAYILDEYGENGVPPTAMVKILHS----ALNYPKLKLEFESRISLPPKVGLLQWF  113

Query  662  VEMFPETGAWFAARLRYTRSCAVMSMVGYVLGLGDRHGENILFEEGTGGVIHVDFN-CLF  720
            V+  P+   W  AR  + RSCA  S++ Y+LG GDRH +NIL ++ TG + H+DF  CL 
Sbjct  114  VKKSPDAEEWGEARKNFVRSCAGYSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCLP  173

Query  721  DKGLTFEKPELVPFRLTQNMIDAFGAYGYNGPFRRTCEISLRLLRQNEDALMTVLETFLH  780
            D G     PE VPFRLT+ M+ A G  G  G FR  CE +   LR+N + L  +L+  + 
Sbjct  174  DAGKDLPFPEKVPFRLTREMVYAMGPSGDEGLFRELCETAYEALRRNLNLLTNLLKLMVA  233

Query  781  DPTTDF  786
            D   D+
Sbjct  234  DGLPDW  239


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 165 bits (420),  Expect = 9e-46, Method: Composition-based stats.
 Identities = 70/310 (23%), Positives = 119/310 (38%), Gaps = 20/310 (6%)

Query  17   ALCALRLGNKTEFRNIIHDLQLSVAKSLTVNSVTSLQSCHDSILKLHALTEMELIS---D  73
            A+ AL      E    I   +  +   L+  S  S    +  +++L  L E+E I     
Sbjct  36   AILALHRNQFDEAERYIEKARQLLDTELSALSGESYNRAYPLLVRLQQLAELEEIIQYKQ  95

Query  74   CEGTENSSLTSIHDVLNRRLDVLGGYIADKQYLLGLRRATME-LTHGFMESDIAGSWLTS  132
              G  +  L S+      RL      +   Q +L +R   +  +   ++    A  WL  
Sbjct  96   KLGQSSEELKSLLQTWRNRLPGCQDDVEIWQDILTVRSLVLSPIEDVYLGGYHAEMWLKF  155

Query  133  ARLSRKGNYTNQAYHSMLRAARLKDRS----ATIEHARLLWKDGHHRKAIQTLEGAIAAN  188
            A L+RK    + A  ++L+                +A+ LW  G  ++A+  L   ++  
Sbjct  156  ANLARKSGRFSLAEKALLKLLGEDPEEWLPEVVYAYAKYLWPTGEQQEALLKLREFLSCY  215

Query  189  EFASDTSSSG----GLKN-EKQQNLIAARAHLLLAKWTDRAGQ----TQSDVIVQRYREA  239
               +    SG       N E+   L+A R +LL  KW    GQ     +S+ I+Q Y  A
Sbjct  216  LQKNGELLSGLEVINPTNLEEFTELLA-RCYLLKGKWQAALGQNWAEEKSEEILQAYLLA  274

Query  240  IKLHSRWEKAHYYLGKHYDKILESEKAKPLGKEAQIYLSGEASKLVIDNYLRSLAHGNKY  299
             +    W KA +       ++L  E+     +     LS       ++ YLRSL+  ++ 
Sbjct  275  TQFDPSWYKAWHTWALFNFEVLRKEEQGKEEEG-PEDLS-RYVVPAVEGYLRSLSLSSEN  332

Query  300  VFQSLPRILT  309
              Q   R+LT
Sbjct  333  SLQDTLRLLT  342



Lambda      K        H        a         alpha
   0.320    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1060844846


Query= TCONS_00029908

Length=712
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  232     3e-72
CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  127     1e-32


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 232 bits (595),  Expect = 3e-72, Method: Composition-based stats.
 Identities = 88/246 (36%), Positives = 130/246 (53%), Gaps = 9/246 (4%)

Query  429  IYNVLCKPKDDLRKDQRLMEFNNTINRFLKKDVESSKRRMYIKTYAVTPLNEECGLIEWV  488
             Y  + K  DDLR+D+ +++    ++  L KD    +R   +K Y+V PL  +CG+IEWV
Sbjct  1    GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  489  DNLRTLREIIIKLLKERGIMPNYNEIRHYLNEACSEASKLHL-FTTKVLMKFPPVLHEWF  547
             N  TL  I+ +  +         +I H          KL L F +++ +     L +WF
Sbjct  58   PNSETLAYILDEYGENGVPPTAMVKILHS----ALNYPKLKLEFESRISLPPKVGLLQWF  113

Query  548  VEMFPETGAWFAARLRYTRSCAVMSMVGYVLGLGDRHGENILFEEGTGGVIHVDFN-CLF  606
            V+  P+   W  AR  + RSCA  S++ Y+LG GDRH +NIL ++ TG + H+DF  CL 
Sbjct  114  VKKSPDAEEWGEARKNFVRSCAGYSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCLP  173

Query  607  DKGLTFEKPELVPFRLTQNMIDAFGAYGYNGPFRRTCEISLRLLRQNEDALMTVLETFLH  666
            D G     PE VPFRLT+ M+ A G  G  G FR  CE +   LR+N + L  +L+  + 
Sbjct  174  DAGKDLPFPEKVPFRLTREMVYAMGPSGDEGLFRELCETAYEALRRNLNLLTNLLKLMVA  233

Query  667  DPTTDF  672
            D   D+
Sbjct  234  DGLPDW  239


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 127 bits (321),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 80/202 (40%), Gaps = 16/202 (8%)

Query  1    MESDIAGSWLTSARLSRKGNYTNQAYHSMLRAARLKDRS----ATIEHARLLWKDGHHRK  56
            +    A  WL  A L+RK    + A  ++L+                +A+ LW  G  ++
Sbjct  144  LGGYHAEMWLKFANLARKSGRFSLAEKALLKLLGEDPEEWLPEVVYAYAKYLWPTGEQQE  203

Query  57   AIQTLEGAIAANEFASDTSSSG----GLKN-EKQQNLIAARAHLLLAKWTDRAGQ----T  107
            A+  L   ++     +    SG       N E+   L+A R +LL  KW    GQ     
Sbjct  204  ALLKLREFLSCYLQKNGELLSGLEVINPTNLEEFTELLA-RCYLLKGKWQAALGQNWAEE  262

Query  108  QSDVIVQRYREAIKLHSRWEKAHYYLGKHYDKILESEKAKPLGKEAQIYLSGEASKLVID  167
            +S+ I+Q Y  A +    W KA +       ++L  E+     +  +           ++
Sbjct  263  KSEEILQAYLLATQFDPSWYKAWHTWALFNFEVLRKEEQGKEEEGPEDL--SRYVVPAVE  320

Query  168  NYLRSLAHGNKYVFQSLPRILT  189
             YLRSL+  ++   Q   R+LT
Sbjct  321  GYLRSLSLSSENSLQDTLRLLT  342



Lambda      K        H        a         alpha
   0.320    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 912895010


Query= TCONS_00034682

Length=728
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  232     5e-72
CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  128     5e-33


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 232 bits (594),  Expect = 5e-72, Method: Composition-based stats.
 Identities = 88/246 (36%), Positives = 130/246 (53%), Gaps = 9/246 (4%)

Query  430  IYNVLCKPKDDLRKDQRLMEFNNTINRFLKKDVESSKRRMYIKTYAVTPLNEECGLIEWV  489
             Y  + K  DDLR+D+ +++    ++  L KD    +R   +K Y+V PL  +CG+IEWV
Sbjct  1    GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  490  DNLRTLREIIIKLLKERGIMPNYNEIRHYLNEACSEASKLHL-FTTKVLMKFPPVLHEWF  548
             N  TL  I+ +  +         +I H          KL L F +++ +     L +WF
Sbjct  58   PNSETLAYILDEYGENGVPPTAMVKILHS----ALNYPKLKLEFESRISLPPKVGLLQWF  113

Query  549  VEMFPETGAWFAARLRYTRSCAVMSMVGYVLGLGDRHGENILFEEGTGGVIHVDFN-CLF  607
            V+  P+   W  AR  + RSCA  S++ Y+LG GDRH +NIL ++ TG + H+DF  CL 
Sbjct  114  VKKSPDAEEWGEARKNFVRSCAGYSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCLP  173

Query  608  DKGLTFEKPELVPFRLTQNMIDAFGAYGYNGPFRRTCEISLRLLRQNEDALMTVLETFLH  667
            D G     PE VPFRLT+ M+ A G  G  G FR  CE +   LR+N + L  +L+  + 
Sbjct  174  DAGKDLPFPEKVPFRLTREMVYAMGPSGDEGLFRELCETAYEALRRNLNLLTNLLKLMVA  233

Query  668  DPTTDF  673
            D   D+
Sbjct  234  DGLPDW  239


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 128 bits (324),  Expect = 5e-33, Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 81/203 (40%), Gaps = 16/203 (8%)

Query  7    FMESDIAGSWLTSARLSRKGNYTNQAYHSMLRAARLKDRS----ATIEHARLLWKDGHHR  62
            ++    A  WL  A L+RK    + A  ++L+                +A+ LW  G  +
Sbjct  143  YLGGYHAEMWLKFANLARKSGRFSLAEKALLKLLGEDPEEWLPEVVYAYAKYLWPTGEQQ  202

Query  63   KAIQTLEGAIAANEFASDTSSSG----GLKN-EKQQNLIAARAHLLLAKWTDRAGQ----  113
            +A+  L   ++     +    SG       N E+   L+A R +LL  KW    GQ    
Sbjct  203  EALLKLREFLSCYLQKNGELLSGLEVINPTNLEEFTELLA-RCYLLKGKWQAALGQNWAE  261

Query  114  TQSDVIVQRYREAIKLHSRWEKAHYYLGKHYDKILESEKAKPLGKEAQIYLSGEASKLVI  173
             +S+ I+Q Y  A +    W KA +       ++L  E+     +  +           +
Sbjct  262  EKSEEILQAYLLATQFDPSWYKAWHTWALFNFEVLRKEEQGKEEEGPEDL--SRYVVPAV  319

Query  174  DNYLRSLAHGNKYVFQSLPRILT  196
            + YLRSL+  ++   Q   R+LT
Sbjct  320  EGYLRSLSLSSENSLQDTLRLLT  342



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 922566368


Query= TCONS_00029909

Length=112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425451 pfam00071, Ras, Ras family. Includes sub-families Ras,...  112     2e-33


>CDD:425451 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, 
Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, 
arf and myosin_head. See pfam00009 pfam00025, pfam00063. 
As regards Rab GTPases, these are important regulators 
of vesicle formation, motility and fusion. They share a fold 
in common with all Ras GTPases: this is a six-stranded beta-sheet 
surrounded by five alpha-helices.
Length=162

 Score = 112 bits (282),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 0/73 (0%)

Query  7    IRTWFSNVEQHASEGVHKILIGNKCDWEEKRAVSTEQGQQLADELGIPFLEVSAKNNINI  66
            ++ W   + +HA E V  +L+GNKCD E++R VSTE+G+ LA ELG+PF+E SAK N N+
Sbjct  90   VKKWVEEILRHADENVPIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENV  149

Query  67   EKAFYSLASAIKK  79
            E+AF  LA  I K
Sbjct  150  EEAFEELAREILK  162



Lambda      K        H        a         alpha
   0.312    0.129    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00029915

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395798 pfam01008, IF-2B, Initiation factor 2 subunit family. ...  244     1e-79


>CDD:395798 pfam01008, IF-2B, Initiation factor 2 subunit family.  This family 
includes initiation factor 2B alpha, beta and delta subunits 
from eukaryotes, initiation factor 2B subunits 1 and 
2 from archaebacteria and some proteins of unknown function 
from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP 
and the small ribosomal subunit. Members of this family have 
also been characterized as 5-methylthioribose- 1-phosphate 
isomerases, an enzyme of the methionine salvage pathway. The 
crystal structure of Ypr118w, a non-essential, low-copy number 
gene product from Saccharomyces cerevisiae, reveals a dimeric 
protein with two domains and a putative active site cleft.
Length=281

 Score = 244 bits (625),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 120/301 (40%), Positives = 154/301 (51%), Gaps = 38/301 (13%)

Query  68   LIIHDKLSSRAEEVKLFIREKLDYLVSSRPTAVNLSDAARKLESTISGHADTPGATGRTV  127
            L+I D  +    E+K  +R  +++L+S+RPTAV+L +A  +L   +   A    +     
Sbjct  18   LVIQDARTPTVAELKEQLRSAIEFLISARPTAVSLGNAIDRLLRIVL--ALHSSSDVEEA  75

Query  128  AEAFIRAAEEMMTKDLDDNMKIGQNGAEWIIKHALARHKSTATVLTHCNTGSLATSGYGT  187
             E+ I AA+E + +  +   KIG   AE I        K   T+LTHCN+G        T
Sbjct  76   KESLIEAADEFIDEIEEARRKIGAIAAELI--------KDGDTILTHCNSG--------T  119

Query  188  ALGVIRSLASKKALEHAYCTETRPYNQGSRLTAFELVHDRLPATLITDSMVAALLASTKA  247
             LGV+R+   +        TE+RP  QG RLTA ELV   +P TLITDS V  ++     
Sbjct  120  VLGVLRAAHKEGKRFRVIVTESRPRLQG-RLTAKELVQAGIPVTLITDSAVGYVMQ----  174

Query  248  EVDAIVVGADRVAANGDTANKIGTYGLAVLAKYHGVKFLVAAPLTTIDLGTKSGEDIVIE  307
            EVD ++VGADR+ ANG  ANKIGTY LA+LAK H V F V A     D      EDI IE
Sbjct  175  EVDKVIVGADRILANGGIANKIGTYQLALLAKAHNVPFYVVAETYKFDPRFPLDEDIFIE  234

Query  308  ERPSAEVTKIRGPVDGDHPADIVKLETVHIAAKGIDVWNPAFDVTPSTLIDGIITEVGVI  367
            ER   EV    G                 IA   + V NPAFD TP  LI  IITEVGV+
Sbjct  235  ERDPEEVLYRTGVR---------------IAPPNLKVRNPAFDYTPPELITLIITEVGVL  279

Query  368  E  368
             
Sbjct  280  P  280



Lambda      K        H        a         alpha
   0.317    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00029917

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395798 pfam01008, IF-2B, Initiation factor 2 subunit family. ...  244     1e-79


>CDD:395798 pfam01008, IF-2B, Initiation factor 2 subunit family.  This family 
includes initiation factor 2B alpha, beta and delta subunits 
from eukaryotes, initiation factor 2B subunits 1 and 
2 from archaebacteria and some proteins of unknown function 
from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP 
and the small ribosomal subunit. Members of this family have 
also been characterized as 5-methylthioribose- 1-phosphate 
isomerases, an enzyme of the methionine salvage pathway. The 
crystal structure of Ypr118w, a non-essential, low-copy number 
gene product from Saccharomyces cerevisiae, reveals a dimeric 
protein with two domains and a putative active site cleft.
Length=281

 Score = 244 bits (625),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 120/301 (40%), Positives = 154/301 (51%), Gaps = 38/301 (13%)

Query  68   LIIHDKLSSRAEEVKLFIREKLDYLVSSRPTAVNLSDAARKLESTISGHADTPGATGRTV  127
            L+I D  +    E+K  +R  +++L+S+RPTAV+L +A  +L   +   A    +     
Sbjct  18   LVIQDARTPTVAELKEQLRSAIEFLISARPTAVSLGNAIDRLLRIVL--ALHSSSDVEEA  75

Query  128  AEAFIRAAEEMMTKDLDDNMKIGQNGAEWIIKHALARHKSTATVLTHCNTGSLATSGYGT  187
             E+ I AA+E + +  +   KIG   AE I        K   T+LTHCN+G        T
Sbjct  76   KESLIEAADEFIDEIEEARRKIGAIAAELI--------KDGDTILTHCNSG--------T  119

Query  188  ALGVIRSLASKKALEHAYCTETRPYNQGSRLTAFELVHDRLPATLITDSMVAALLASTKA  247
             LGV+R+   +        TE+RP  QG RLTA ELV   +P TLITDS V  ++     
Sbjct  120  VLGVLRAAHKEGKRFRVIVTESRPRLQG-RLTAKELVQAGIPVTLITDSAVGYVMQ----  174

Query  248  EVDAIVVGADRVAANGDTANKIGTYGLAVLAKYHGVKFLVAAPLTTIDLGTKSGEDIVIE  307
            EVD ++VGADR+ ANG  ANKIGTY LA+LAK H V F V A     D      EDI IE
Sbjct  175  EVDKVIVGADRILANGGIANKIGTYQLALLAKAHNVPFYVVAETYKFDPRFPLDEDIFIE  234

Query  308  ERPSAEVTKIRGPVDGDHPADIVKLETVHIAAKGIDVWNPAFDVTPSTLIDGIITEVGVI  367
            ER   EV    G                 IA   + V NPAFD TP  LI  IITEVGV+
Sbjct  235  ERDPEEVLYRTGVR---------------IAPPNLKVRNPAFDYTPPELITLIITEVGVL  279

Query  368  E  368
             
Sbjct  280  P  280



Lambda      K        H        a         alpha
   0.317    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00029918

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395798 pfam01008, IF-2B, Initiation factor 2 subunit family. ...  244     1e-79


>CDD:395798 pfam01008, IF-2B, Initiation factor 2 subunit family.  This family 
includes initiation factor 2B alpha, beta and delta subunits 
from eukaryotes, initiation factor 2B subunits 1 and 
2 from archaebacteria and some proteins of unknown function 
from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP 
and the small ribosomal subunit. Members of this family have 
also been characterized as 5-methylthioribose- 1-phosphate 
isomerases, an enzyme of the methionine salvage pathway. The 
crystal structure of Ypr118w, a non-essential, low-copy number 
gene product from Saccharomyces cerevisiae, reveals a dimeric 
protein with two domains and a putative active site cleft.
Length=281

 Score = 244 bits (625),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 120/301 (40%), Positives = 154/301 (51%), Gaps = 38/301 (13%)

Query  68   LIIHDKLSSRAEEVKLFIREKLDYLVSSRPTAVNLSDAARKLESTISGHADTPGATGRTV  127
            L+I D  +    E+K  +R  +++L+S+RPTAV+L +A  +L   +   A    +     
Sbjct  18   LVIQDARTPTVAELKEQLRSAIEFLISARPTAVSLGNAIDRLLRIVL--ALHSSSDVEEA  75

Query  128  AEAFIRAAEEMMTKDLDDNMKIGQNGAEWIIKHALARHKSTATVLTHCNTGSLATSGYGT  187
             E+ I AA+E + +  +   KIG   AE I        K   T+LTHCN+G        T
Sbjct  76   KESLIEAADEFIDEIEEARRKIGAIAAELI--------KDGDTILTHCNSG--------T  119

Query  188  ALGVIRSLASKKALEHAYCTETRPYNQGSRLTAFELVHDRLPATLITDSMVAALLASTKA  247
             LGV+R+   +        TE+RP  QG RLTA ELV   +P TLITDS V  ++     
Sbjct  120  VLGVLRAAHKEGKRFRVIVTESRPRLQG-RLTAKELVQAGIPVTLITDSAVGYVMQ----  174

Query  248  EVDAIVVGADRVAANGDTANKIGTYGLAVLAKYHGVKFLVAAPLTTIDLGTKSGEDIVIE  307
            EVD ++VGADR+ ANG  ANKIGTY LA+LAK H V F V A     D      EDI IE
Sbjct  175  EVDKVIVGADRILANGGIANKIGTYQLALLAKAHNVPFYVVAETYKFDPRFPLDEDIFIE  234

Query  308  ERPSAEVTKIRGPVDGDHPADIVKLETVHIAAKGIDVWNPAFDVTPSTLIDGIITEVGVI  367
            ER   EV    G                 IA   + V NPAFD TP  LI  IITEVGV+
Sbjct  235  ERDPEEVLYRTGVR---------------IAPPNLKVRNPAFDYTPPELITLIITEVGVL  279

Query  368  E  368
             
Sbjct  280  P  280



Lambda      K        H        a         alpha
   0.317    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00029919

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395798 pfam01008, IF-2B, Initiation factor 2 subunit family. ...  244     1e-79


>CDD:395798 pfam01008, IF-2B, Initiation factor 2 subunit family.  This family 
includes initiation factor 2B alpha, beta and delta subunits 
from eukaryotes, initiation factor 2B subunits 1 and 
2 from archaebacteria and some proteins of unknown function 
from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP 
and the small ribosomal subunit. Members of this family have 
also been characterized as 5-methylthioribose- 1-phosphate 
isomerases, an enzyme of the methionine salvage pathway. The 
crystal structure of Ypr118w, a non-essential, low-copy number 
gene product from Saccharomyces cerevisiae, reveals a dimeric 
protein with two domains and a putative active site cleft.
Length=281

 Score = 244 bits (625),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 120/301 (40%), Positives = 154/301 (51%), Gaps = 38/301 (13%)

Query  68   LIIHDKLSSRAEEVKLFIREKLDYLVSSRPTAVNLSDAARKLESTISGHADTPGATGRTV  127
            L+I D  +    E+K  +R  +++L+S+RPTAV+L +A  +L   +   A    +     
Sbjct  18   LVIQDARTPTVAELKEQLRSAIEFLISARPTAVSLGNAIDRLLRIVL--ALHSSSDVEEA  75

Query  128  AEAFIRAAEEMMTKDLDDNMKIGQNGAEWIIKHALARHKSTATVLTHCNTGSLATSGYGT  187
             E+ I AA+E + +  +   KIG   AE I        K   T+LTHCN+G        T
Sbjct  76   KESLIEAADEFIDEIEEARRKIGAIAAELI--------KDGDTILTHCNSG--------T  119

Query  188  ALGVIRSLASKKALEHAYCTETRPYNQGSRLTAFELVHDRLPATLITDSMVAALLASTKA  247
             LGV+R+   +        TE+RP  QG RLTA ELV   +P TLITDS V  ++     
Sbjct  120  VLGVLRAAHKEGKRFRVIVTESRPRLQG-RLTAKELVQAGIPVTLITDSAVGYVMQ----  174

Query  248  EVDAIVVGADRVAANGDTANKIGTYGLAVLAKYHGVKFLVAAPLTTIDLGTKSGEDIVIE  307
            EVD ++VGADR+ ANG  ANKIGTY LA+LAK H V F V A     D      EDI IE
Sbjct  175  EVDKVIVGADRILANGGIANKIGTYQLALLAKAHNVPFYVVAETYKFDPRFPLDEDIFIE  234

Query  308  ERPSAEVTKIRGPVDGDHPADIVKLETVHIAAKGIDVWNPAFDVTPSTLIDGIITEVGVI  367
            ER   EV    G                 IA   + V NPAFD TP  LI  IITEVGV+
Sbjct  235  ERDPEEVLYRTGVR---------------IAPPNLKVRNPAFDYTPPELITLIITEVGVL  279

Query  368  E  368
             
Sbjct  280  P  280



Lambda      K        H        a         alpha
   0.317    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00034690

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395798 pfam01008, IF-2B, Initiation factor 2 subunit family. ...  194     1e-62


>CDD:395798 pfam01008, IF-2B, Initiation factor 2 subunit family.  This family 
includes initiation factor 2B alpha, beta and delta subunits 
from eukaryotes, initiation factor 2B subunits 1 and 
2 from archaebacteria and some proteins of unknown function 
from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP 
and the small ribosomal subunit. Members of this family have 
also been characterized as 5-methylthioribose- 1-phosphate 
isomerases, an enzyme of the methionine salvage pathway. The 
crystal structure of Ypr118w, a non-essential, low-copy number 
gene product from Saccharomyces cerevisiae, reveals a dimeric 
protein with two domains and a putative active site cleft.
Length=281

 Score = 194 bits (496),  Expect = 1e-62, Method: Composition-based stats.
 Identities = 85/183 (46%), Positives = 98/183 (54%), Gaps = 20/183 (11%)

Query  13   GTALGVIRSLASKKALEHAYCTETRPYNQGSRLTAFELVHDRLPATLITDSMVAALLAST  72
            GT LGV+R+   +        TE+RP  QG RLTA ELV   +P TLITDS V  ++   
Sbjct  118  GTVLGVLRAAHKEGKRFRVIVTESRPRLQG-RLTAKELVQAGIPVTLITDSAVGYVMQ--  174

Query  73   KAEVDAIVVGADRVAANGDTANKIGTYGLAVLAKYHGVKFLVAAPLTTIDLGTKSGEDIV  132
              EVD ++VGADR+ ANG  ANKIGTY LA+LAK H V F V A     D      EDI 
Sbjct  175  --EVDKVIVGADRILANGGIANKIGTYQLALLAKAHNVPFYVVAETYKFDPRFPLDEDIF  232

Query  133  IEERPSAEVTKIRGPVDGDHPADIVKLETVHIAAKGIDVWNPAFDVTPSTLIDGIITEVG  192
            IEER   EV    G                 IA   + V NPAFD TP  LI  IITEVG
Sbjct  233  IEERDPEEVLYRTGVR---------------IAPPNLKVRNPAFDYTPPELITLIITEVG  277

Query  193  VIE  195
            V+ 
Sbjct  278  VLP  280



Lambda      K        H        a         alpha
   0.315    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00029916

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395798 pfam01008, IF-2B, Initiation factor 2 subunit family. ...  194     1e-62


>CDD:395798 pfam01008, IF-2B, Initiation factor 2 subunit family.  This family 
includes initiation factor 2B alpha, beta and delta subunits 
from eukaryotes, initiation factor 2B subunits 1 and 
2 from archaebacteria and some proteins of unknown function 
from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP 
and the small ribosomal subunit. Members of this family have 
also been characterized as 5-methylthioribose- 1-phosphate 
isomerases, an enzyme of the methionine salvage pathway. The 
crystal structure of Ypr118w, a non-essential, low-copy number 
gene product from Saccharomyces cerevisiae, reveals a dimeric 
protein with two domains and a putative active site cleft.
Length=281

 Score = 194 bits (496),  Expect = 1e-62, Method: Composition-based stats.
 Identities = 85/183 (46%), Positives = 98/183 (54%), Gaps = 20/183 (11%)

Query  13   GTALGVIRSLASKKALEHAYCTETRPYNQGSRLTAFELVHDRLPATLITDSMVAALLAST  72
            GT LGV+R+   +        TE+RP  QG RLTA ELV   +P TLITDS V  ++   
Sbjct  118  GTVLGVLRAAHKEGKRFRVIVTESRPRLQG-RLTAKELVQAGIPVTLITDSAVGYVMQ--  174

Query  73   KAEVDAIVVGADRVAANGDTANKIGTYGLAVLAKYHGVKFLVAAPLTTIDLGTKSGEDIV  132
              EVD ++VGADR+ ANG  ANKIGTY LA+LAK H V F V A     D      EDI 
Sbjct  175  --EVDKVIVGADRILANGGIANKIGTYQLALLAKAHNVPFYVVAETYKFDPRFPLDEDIF  232

Query  133  IEERPSAEVTKIRGPVDGDHPADIVKLETVHIAAKGIDVWNPAFDVTPSTLIDGIITEVG  192
            IEER   EV    G                 IA   + V NPAFD TP  LI  IITEVG
Sbjct  233  IEERDPEEVLYRTGVR---------------IAPPNLKVRNPAFDYTPPELITLIITEVG  277

Query  193  VIE  195
            V+ 
Sbjct  278  VLP  280



Lambda      K        H        a         alpha
   0.315    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00034691

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395798 pfam01008, IF-2B, Initiation factor 2 subunit family. ...  244     1e-79


>CDD:395798 pfam01008, IF-2B, Initiation factor 2 subunit family.  This family 
includes initiation factor 2B alpha, beta and delta subunits 
from eukaryotes, initiation factor 2B subunits 1 and 
2 from archaebacteria and some proteins of unknown function 
from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP 
and the small ribosomal subunit. Members of this family have 
also been characterized as 5-methylthioribose- 1-phosphate 
isomerases, an enzyme of the methionine salvage pathway. The 
crystal structure of Ypr118w, a non-essential, low-copy number 
gene product from Saccharomyces cerevisiae, reveals a dimeric 
protein with two domains and a putative active site cleft.
Length=281

 Score = 244 bits (625),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 120/301 (40%), Positives = 154/301 (51%), Gaps = 38/301 (13%)

Query  68   LIIHDKLSSRAEEVKLFIREKLDYLVSSRPTAVNLSDAARKLESTISGHADTPGATGRTV  127
            L+I D  +    E+K  +R  +++L+S+RPTAV+L +A  +L   +   A    +     
Sbjct  18   LVIQDARTPTVAELKEQLRSAIEFLISARPTAVSLGNAIDRLLRIVL--ALHSSSDVEEA  75

Query  128  AEAFIRAAEEMMTKDLDDNMKIGQNGAEWIIKHALARHKSTATVLTHCNTGSLATSGYGT  187
             E+ I AA+E + +  +   KIG   AE I        K   T+LTHCN+G        T
Sbjct  76   KESLIEAADEFIDEIEEARRKIGAIAAELI--------KDGDTILTHCNSG--------T  119

Query  188  ALGVIRSLASKKALEHAYCTETRPYNQGSRLTAFELVHDRLPATLITDSMVAALLASTKA  247
             LGV+R+   +        TE+RP  QG RLTA ELV   +P TLITDS V  ++     
Sbjct  120  VLGVLRAAHKEGKRFRVIVTESRPRLQG-RLTAKELVQAGIPVTLITDSAVGYVMQ----  174

Query  248  EVDAIVVGADRVAANGDTANKIGTYGLAVLAKYHGVKFLVAAPLTTIDLGTKSGEDIVIE  307
            EVD ++VGADR+ ANG  ANKIGTY LA+LAK H V F V A     D      EDI IE
Sbjct  175  EVDKVIVGADRILANGGIANKIGTYQLALLAKAHNVPFYVVAETYKFDPRFPLDEDIFIE  234

Query  308  ERPSAEVTKIRGPVDGDHPADIVKLETVHIAAKGIDVWNPAFDVTPSTLIDGIITEVGVI  367
            ER   EV    G                 IA   + V NPAFD TP  LI  IITEVGV+
Sbjct  235  ERDPEEVLYRTGVR---------------IAPPNLKVRNPAFDYTPPELITLIITEVGVL  279

Query  368  E  368
             
Sbjct  280  P  280



Lambda      K        H        a         alpha
   0.317    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00029920

Length=1032
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427181 pfam03177, Nucleoporin_C, Non-repetitive/WGA-negative ...  615     0.0  
CDD:400932 pfam08801, Nucleoporin_N, Nup133 N terminal like. Nup1...  284     8e-87


>CDD:427181 pfam03177, Nucleoporin_C, Non-repetitive/WGA-negative nucleoporin 
C-terminal.  This is the C-termainl half of a family of 
nucleoporin proteins. Nucleoporins are the main components 
of the nuclear pore complex in eukaryotic cells, and mediate 
bidirectional nucleocytoplasmic transport, especially of mRNA 
and proteins. Two nucleoporin classes are known: one is characterized 
by the FG repeat pfam03093; the other is represented 
by this family, and lacks any repeats. RNA undergoing 
nuclear export first encounters the basket of the nuclear pore 
and many nucleoporins are accessible on the basket side of 
the pore.
Length=559

 Score = 615 bits (1587),  Expect = 0.0, Method: Composition-based stats.
 Identities = 224/604 (37%), Positives = 321/604 (53%), Gaps = 63/604 (10%)

Query  415   SVTLEQNLKLRAKALDDLASLLLQHKKPLHRQTWYELLWGAEKLAAQRALWKSEDKARRA  474
               +LEQNL+LR  ALDDLA  L  +   + R T +ELLW AEK+AA  ALWK  +     
Sbjct  1     LASLEQNLELRLSALDDLAEFLKSNGVSIDRDTRWELLWQAEKIAAATALWKKHEAFLAE  60

Query  475   MGQGNTFLAHVIGSMNEKFKTKSEDYEDKDNVRDWFLFDTFRMEHIIPWIFKALKLQKGI  534
               +  T L  +I  +N                                            
Sbjct  61    RPEKRTLLNSIIKLIN--------------------------------------------  76

Query  535   STKQGRRVLEEIVQASELSLAVLETAFRFRDEHARQYGLEDEHIEDGVLSSGYDGLSEFW  594
             S K+    L  + +A+E+SLA LE AF FRDE+A  YG+ DE +EDG+     +GL E W
Sbjct  77    SMKEALSFLNVLYEANEISLAALEEAFGFRDENAAFYGIGDELLEDGI-----EGLPEPW  131

Query  595   TSRDIVFLETGHLLDLELDTCRAWTQQATTS-LDLREQKLVRQIAENSARQLRVLSLMHY  653
             TS   ++      LDL L   +      T       +  L+++I  +      VL     
Sbjct  132   TSTSYIYSNLKRQLDLTLLWFKDLFAPNTRGGSIEPDATLLQEICGSFCSLTDVLGFSAI  191

Query  654   ERVRWLSSQDNPKSVDEGIELEQTYTKQRRWQLFKLAGIGQLEDAISLAEKFRDMSALVE  713
             ER+RW   Q +PK  + G  LE+ Y   R+WQ+FKLA IG+LE+AI LAEK RD  ALVE
Sbjct  192   ERLRWAKEQLDPKLQNAGKLLEEAYDSDRKWQIFKLASIGKLEEAIELAEKLRDYPALVE  251

Query  714   LIIELQDQTLADS----EHAENVTNYESEQLGRRISTYFEKFGEPWADAFFTRQISMGQS  769
             L++E+ +Q    +    +         +E+L +RIS YFE+FGE +A AF+   IS GQ 
Sbjct  252   LLLEIANQLEDKAPDSGDDERKEYYNRAEELDKRISLYFERFGELFAYAFYDWLISQGQV  311

Query  770   EILFTMRRFQPFINRFLHKNPTYARLCWINDAIGEDNYEAAARSLETLALERESDLWCHR  829
             E L   +   PFI  FL + P YA+L WIND   E +Y+ AA  L +LAL +E D+W  R
Sbjct  312   ERLLDFKDNTPFITPFLREKPEYAKLSWINDVTKEKDYDHAAEILYSLALSQEQDVWSKR  371

Query  830   VELSLSKLATLAAWEESSAAAKPIFGNEIKRLEDLAELDAVQEVVYAYMMPALQGAIDQK  889
             +ELSL+KLA L A  E S         +++R++DL E+  +Q+ +Y+ ++P++QGAID+K
Sbjct  372   IELSLAKLALL-AELEESDTPDVGLETDLERIDDLLEVINIQDDLYSLILPSIQGAIDEK  430

Query  890   AETELAIDQFGRFVNDTPSLHEVLSALLTKVISRQILRVDQLVDLLTLIDGGQVSEETQN  949
             AE +LA++QFG  ++D P+L ++L   L K++  +IL    L+DLLTL+D        ++
Sbjct  431   AEVQLAMEQFGNVLDDRPALRQLLKDGLKKLLKHKILDASDLIDLLTLMDLRP----GED  486

Query  950   EFIGKEFYLALRVIRLNSSTQEGPLYCIPLQKLVWRRCMIRDDWQLEKNADN-TDHEPGD  1008
             E     FYLALRV++L+    E       L++L+WRRCMIRDDW+   +     D E   
Sbjct  487   EDPLGYFYLALRVLKLSDLRNEDED---ALERLIWRRCMIRDDWEELNDTLKKEDAEVEA  543

Query  1009  HMHC  1012
              +  
Sbjct  544   QLRS  547


>CDD:400932 pfam08801, Nucleoporin_N, Nup133 N terminal like.  Nup133 is 
a nucleoporin that is crucial for nuclear pore complex (NPC) 
biogenesis. The N terminal forms a seven-bladed beta propeller 
structure. This family now contains other sized nucleoporins, 
including Nup155, Nup8, Nuo132, Nup15 and Nup170.
Length=426

 Score = 284 bits (728),  Expect = 8e-87, Method: Composition-based stats.
 Identities = 104/345 (30%), Positives = 178/345 (52%), Gaps = 19/345 (6%)

Query  1    MVVMPYTGRIIYWETISHAGSLGLPRQKQSGLQGHVPGLLPSEYVTDVINCEPSG-VIVT  59
            ++V+  TG I+YWE+IS AG+L L   +  GL+  +  L   EYVTD++N EP+G + + 
Sbjct  95   VLVVATTGDIVYWESISSAGAL-LSLNELQGLETDLSVLSDGEYVTDLVNSEPAGRIFLA  153

Query  60   FSSGRVAHITFRDSQGRPTVMANFLRNSSSSSGLLNGIKSVFSGGCWRKDVAAVKAARSH  119
             S+GR+  +T+RDS G+P++    +R+ S     L+ I SVF GG  R+++ +++     
Sbjct  154  GSTGRLYELTYRDSSGKPSLKCRKIRSPSGGFSSLSIIPSVFGGGSEREEIVSLRV--DP  211

Query  120  QRGQRDIIVGTTTGVFEIWDTHWSNGSIMKKQFDIRQDLCRSLGRKHTEVASDTDLKILD  179
             RG+R +   T+ GV ++WD   S GS +K   DIRQ +  ++    T   +   LKILD
Sbjct  212  SRGERLLYTLTSKGVIQVWDLSSSGGSDLKSDADIRQIILEAISLISTAPLASKSLKILD  271

Query  180  FALLSCGDN-AQDLQHSGAESWRLCLVVAPSRETGRRCISVVQLLLSEEVHVLAASSIDL  238
             + +   ++    L    +   RL  +++         +S+  +     ++         
Sbjct  272  ISPIDSDESSLLHLVAITSNGVRLYYLLSTILLDSPSVLSLSSVRFPPRLN---------  322

Query  239  SFSTLSNAPQPNIKLHVATVSQ--TAFIVIDQSVLLLSLGSYGDSPTSQLLLDSGRLP--  294
            ++S+     +   +L + + S     F+V D SV+L+SL  YG  P  +L+ D+   P  
Sbjct  323  TYSSKLLEGKKKPRLLIPSYSPGTFLFVVFDSSVVLVSLSDYGF-PHGKLVEDTSFYPLD  381

Query  295  SPFNDHITFRSGADYKLLGSGCEDETGEGSSSACLVMVRNFGVIR  339
             P+ D I+ R   D  +LGSG E+ +    S A  V++ NFGV+ 
Sbjct  382  GPWEDIISLRPVLDATILGSGYENVSASQYSPAKFVLLTNFGVVI  426



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1325259936


Query= TCONS_00029921

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00034692

Length=341


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00034693

Length=396


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00034695

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          78.7    6e-17


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 78.7 bits (194),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 63/247 (26%), Positives = 98/247 (40%), Gaps = 24/247 (10%)

Query  46   FPGHGVQRVGMANSWVDNFPGTARPFLDEMD----DTLGFNLSRTIANGPNCELNKTENS  101
            F G G Q  GM    +   P      +D  D       GF++S  + N P   L+ T+  
Sbjct  4    FSGQGSQWAGMGMQLLKTSP-AFAAVIDRADEAFKPQYGFSVSDVLRNNPEGTLDGTQFV  62

Query  102  QPAIMATSILILRILEKEFGFDTKSRVNVTLGHSLGEFSALVAGGYLKFRDALRLVRRRA  161
            QPA+ A  I +  +L + +G     R +  +GHSLGE++A V  G L   +AL     R 
Sbjct  63   QPALFAMQIALAALL-QSYGV----RPDAVVGHSLGEYAAAVVAGALSPEEALLAAVLR-  116

Query  162  EIMAECTRQASKQSGEDYGMVALIYLKDDSSHGLPTIQQVMIANINSKNQIVLSGSIHRI  221
               +    Q +   G     V L                V+ A +NS   +V+SG    +
Sbjct  117  ---SRLMMQLAGPGGM--AAVEL----SAEEVEQRWPDDVVGAVVNSPRSVVISGPQEAV  167

Query  222  TTLLIQLRQFGGHDPRAVRLKSESPFHNPIMAPAAGYMRHELEHIDIEFPSQLPCISNVS  281
              L+ ++ +       A+        H+P M   A  +   L  I    P ++P IS+ S
Sbjct  168  RELVERVSK---EGVGALVENVNYAVHSPQMDAIAPALLSALADIAPRTP-RVPFISSTS  223

Query  282  GLPFESR  288
              P + R
Sbjct  224  IDPSDQR  230



Lambda      K        H        a         alpha
   0.321    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00034694

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00029922

Length=396


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0735    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00029923

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain          69.0    6e-14


>CDD:395567 pfam00698, Acyl_transf_1, Acyl transferase domain.  
Length=319

 Score = 69.0 bits (169),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 86/212 (41%), Gaps = 30/212 (14%)

Query  20   MDDTLGFNLSRTIANGPNCELNKTENSQPAIMATSILILRILEKEFGFDTKSRVNVTLGH  79
                 GF++S  + N P   L+ T+  QPA+ A  I +  +L + +G     R +  +GH
Sbjct  36   FKPQYGFSVSDVLRNNPEGTLDGTQFVQPALFAMQIALAALL-QSYGV----RPDAVVGH  90

Query  80   SLGEFSALVAGGYLKFRDALRLVRRRAEIMAECTRQ-----------ASKQSGED--YGM  126
            SLGE++A V  G L   +AL     R+ +M +                 +Q   D   G 
Sbjct  91   SLGEYAAAVVAGALSPEEALLAAVLRSRLMMQLAGPGGMAAVELSAEEVEQRWPDDVVGA  150

Query  127  VALIFMIANINSKNQIVLSGSIHRITTLLIQLRQFGGHDPRAVRLKSESPFHNPIMAPAA  186
            V         NS   +V+SG    +  L+ ++ +       A+        H+P M   A
Sbjct  151  VV--------NSPRSVVISGPQEAVRELVERVSK---EGVGALVENVNYAVHSPQMDAIA  199

Query  187  GYMRHELEHIDIEFPSQLPCISNVSGLPFESR  218
              +   L  I    P ++P IS+ S  P + R
Sbjct  200  PALLSALADIAPRTP-RVPFISSTSIDPSDQR  230



Lambda      K        H        a         alpha
   0.320    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00029924

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00029925

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426021 pfam01058, Oxidored_q6, NADH ubiquinone oxidoreductase...  122     3e-36


>CDD:426021 pfam01058, Oxidored_q6, NADH ubiquinone oxidoreductase, 20 Kd 
subunit.  
Length=124

 Score = 122 bits (309),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 14/122 (11%)

Query  104  CAVEMMHLSTPRYD-----QDRLGIIFRASPR----QSDVMIVAGTLTNKMAPALRQVYD  154
            C + ++ L  P  D       R GI   ASPR     +DV++V G +T K   AL ++Y+
Sbjct  4    CTISLLALHPPLLDLLDLISLRYGIPLMASPREIPEGADVLLVEGAVTRKPKEALERLYE  63

Query  155  QMPDPRWVISMGSCANGGGYYH----YSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIF  210
              P  ++VI++G+CA  GG        SY  VR    +VPVD+ +PGCPP  EA++  + 
Sbjct  64   AAPKAKYVIAVGTCAAFGGIPAAGNNPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLL  122

Query  211  QL  212
             L
Sbjct  123  AL  124



Lambda      K        H        a         alpha
   0.322    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00029926

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426021 pfam01058, Oxidored_q6, NADH ubiquinone oxidoreductase...  122     3e-36


>CDD:426021 pfam01058, Oxidored_q6, NADH ubiquinone oxidoreductase, 20 Kd 
subunit.  
Length=124

 Score = 122 bits (309),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 14/122 (11%)

Query  104  CAVEMMHLSTPRYD-----QDRLGIIFRASPR----QSDVMIVAGTLTNKMAPALRQVYD  154
            C + ++ L  P  D       R GI   ASPR     +DV++V G +T K   AL ++Y+
Sbjct  4    CTISLLALHPPLLDLLDLISLRYGIPLMASPREIPEGADVLLVEGAVTRKPKEALERLYE  63

Query  155  QMPDPRWVISMGSCANGGGYYH----YSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIF  210
              P  ++VI++G+CA  GG        SY  VR    +VPVD+ +PGCPP  EA++  + 
Sbjct  64   AAPKAKYVIAVGTCAAFGGIPAAGNNPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLL  122

Query  211  QL  212
             L
Sbjct  123  AL  124



Lambda      K        H        a         alpha
   0.322    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00034696

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00034697

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00034698

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426021 pfam01058, Oxidored_q6, NADH ubiquinone oxidoreductase...  122     3e-36


>CDD:426021 pfam01058, Oxidored_q6, NADH ubiquinone oxidoreductase, 20 Kd 
subunit.  
Length=124

 Score = 122 bits (309),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 14/122 (11%)

Query  104  CAVEMMHLSTPRYD-----QDRLGIIFRASPR----QSDVMIVAGTLTNKMAPALRQVYD  154
            C + ++ L  P  D       R GI   ASPR     +DV++V G +T K   AL ++Y+
Sbjct  4    CTISLLALHPPLLDLLDLISLRYGIPLMASPREIPEGADVLLVEGAVTRKPKEALERLYE  63

Query  155  QMPDPRWVISMGSCANGGGYYH----YSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIF  210
              P  ++VI++G+CA  GG        SY  VR    +VPVD+ +PGCPP  EA++  + 
Sbjct  64   AAPKAKYVIAVGTCAAFGGIPAAGNNPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLL  122

Query  211  QL  212
             L
Sbjct  123  AL  124



Lambda      K        H        a         alpha
   0.322    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00034699

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00034700

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426021 pfam01058, Oxidored_q6, NADH ubiquinone oxidoreductase...  122     3e-36


>CDD:426021 pfam01058, Oxidored_q6, NADH ubiquinone oxidoreductase, 20 Kd 
subunit.  
Length=124

 Score = 122 bits (309),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 14/122 (11%)

Query  104  CAVEMMHLSTPRYD-----QDRLGIIFRASPR----QSDVMIVAGTLTNKMAPALRQVYD  154
            C + ++ L  P  D       R GI   ASPR     +DV++V G +T K   AL ++Y+
Sbjct  4    CTISLLALHPPLLDLLDLISLRYGIPLMASPREIPEGADVLLVEGAVTRKPKEALERLYE  63

Query  155  QMPDPRWVISMGSCANGGGYYH----YSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIF  210
              P  ++VI++G+CA  GG        SY  VR    +VPVD+ +PGCPP  EA++  + 
Sbjct  64   AAPKAKYVIAVGTCAAFGGIPAAGNNPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLL  122

Query  211  QL  212
             L
Sbjct  123  AL  124



Lambda      K        H        a         alpha
   0.322    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00034701

Length=244
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426021 pfam01058, Oxidored_q6, NADH ubiquinone oxidoreductase...  122     5e-36


>CDD:426021 pfam01058, Oxidored_q6, NADH ubiquinone oxidoreductase, 20 Kd 
subunit.  
Length=124

 Score = 122 bits (308),  Expect = 5e-36, Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 14/122 (11%)

Query  120  CAVEMMHLSTPRYD-----QDRLGIIFRASPR----QSDVMIVAGTLTNKMAPALRQVYD  170
            C + ++ L  P  D       R GI   ASPR     +DV++V G +T K   AL ++Y+
Sbjct  4    CTISLLALHPPLLDLLDLISLRYGIPLMASPREIPEGADVLLVEGAVTRKPKEALERLYE  63

Query  171  QMPDPRWVISMGSCANGGGYYH----YSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIF  226
              P  ++VI++G+CA  GG        SY  VR    +VPVD+ +PGCPP  EA++  + 
Sbjct  64   AAPKAKYVIAVGTCAAFGGIPAAGNNPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLL  122

Query  227  QL  228
             L
Sbjct  123  AL  124



Lambda      K        H        a         alpha
   0.323    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00029927

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426021 pfam01058, Oxidored_q6, NADH ubiquinone oxidoreductase...  122     3e-36


>CDD:426021 pfam01058, Oxidored_q6, NADH ubiquinone oxidoreductase, 20 Kd 
subunit.  
Length=124

 Score = 122 bits (308),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 14/122 (11%)

Query  99   CAVEMMHLSTPRYD-----QDRLGIIFRASPR----QSDVMIVAGTLTNKMAPALRQVYD  149
            C + ++ L  P  D       R GI   ASPR     +DV++V G +T K   AL ++Y+
Sbjct  4    CTISLLALHPPLLDLLDLISLRYGIPLMASPREIPEGADVLLVEGAVTRKPKEALERLYE  63

Query  150  QMPDPRWVISMGSCANGGGYYH----YSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIF  205
              P  ++VI++G+CA  GG        SY  VR    +VPVD+ +PGCPP  EA++  + 
Sbjct  64   AAPKAKYVIAVGTCAAFGGIPAAGNNPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLL  122

Query  206  QL  207
             L
Sbjct  123  AL  124



Lambda      K        H        a         alpha
   0.322    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00034702

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  85.7    1e-21
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  68.6    6e-15


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 85.7 bits (213),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 35/101 (35%), Positives = 53/101 (52%), Gaps = 3/101 (3%)

Query  63   KRAIITGGDSGIGRAVAILFAMEGASSLIVYLPEEEIDAQETKRRVQETGKECHCLAVDI  122
            K A++TG  SGIGRA+A   A EGA  ++V   EE    +   + +   G +   +  D+
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEE--KLEAVAKELGALGGKALFIQGDV  58

Query  123  RKRENCQKVVDVALRCLGGIDILVNNAAFQNMVQDISELDE  163
              R   + +V+ A+  LG +DILVNNA     +   SEL +
Sbjct  59   TDRAQVKALVEQAVERLGRLDILVNNAG-ITGLGPFSELSD  98


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 68.6 bits (169),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 42/83 (51%), Gaps = 8/83 (10%)

Query  71   DSGIGRAVAILFAMEGASSLIVYLPEEEIDAQETKRRVQETGKECHC--LAVDIRKRENC  128
            +SGIG A+A   A EGA  ++  L E         +RV+E  +E     L  D+   E  
Sbjct  5    ESGIGWAIARALAEEGAEVVLTDLNEAL------AKRVEELAEELGAAVLPCDVTDEEQV  58

Query  129  QKVVDVALRCLGGIDILVNNAAF  151
            + +V  A+   G +DILVNNA F
Sbjct  59   EALVAAAVEKFGRLDILVNNAGF  81



Lambda      K        H        a         alpha
   0.314    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00029928

Length=717
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461128 pfam04006, Mpp10, Mpp10 protein. This family includes ...  268     3e-82


>CDD:461128 pfam04006, Mpp10, Mpp10 protein.  This family includes proteins 
related to Mpp10 (M phase phosphoprotein 10). The U3 small 
nucleolar ribonucleoprotein (snoRNP) is required for three 
cleavage events that generate the mature 18S rRNA from the 
pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a 
U3 snoRNP-specific protein, halts 18S rRNA production and impairs 
cleavage at the three U3 snoRNP-dependent sites.
Length=506

 Score = 268 bits (687),  Expect = 3e-82, Method: Composition-based stats.
 Identities = 145/557 (26%), Positives = 244/557 (44%), Gaps = 97/557 (17%)

Query  96   LKELFVQGFTSDQIWEQATRILDSAKQEIEQDSALIAQHVEPAFLDARASPFLSQEANSE  155
            L+EL V+GF  +QIW+Q     +    ++ +    + +  +   L       L  E + E
Sbjct  40   LEELVVEGFDEEQIWQQLELQNEPVLDQLLKKIGSLLKDEKELRLL------LDSEQDDE  93

Query  156  DISNFSDISDSAADRSDRDSASDDEREDMGSVPESPSMAEGRSDGDSRTDVEESDNDNHN  215
            +  +  +  +   D  + +   ++E E+     E     E  SD +   + +  + +   
Sbjct  94   EDEDEEEDEEDEEDEEEDEDEEEEEEEE-----EEDDEDED-SDDEGLEEEDVKELEQKT  147

Query  216  SRGTYVQDPFGLNDGFFSIDEFNKQSEFLERQDAKGEIDDDLESDEEEIDWHVDPLAGGV  275
             +         ++D FF +DE  K   FLE ++ K                         
Sbjct  148  KKDAKKGRKSVVDDKFFKLDEMEK---FLEDEEKKE------------------------  180

Query  276  SVPSQTTRPTAQRSKRSFENGSESSSDEEGPTFDNVAIENDIDSEDDDAYAISADTTNWM  335
                              E   +   DE     D++    D DSEDD+            
Sbjct  181  ------------------ERKDKGKEDE-----DDIDYFEDDDSEDDED----------D  207

Query  336  NTSDIKYSDFFEPPPRRATSTKTRPLPKTQP----HGAPVETDIDRAIADVRRDLLEDDE  391
               ++KY DFF+PP         +   K +          E + D A+ + + D   +DE
Sbjct  208  GARNLKYEDFFDPPEEEDEKETKKKKDKKKEEDEKDDEEEEDEEDDAMEEEKEDEFAEDE  267

Query  392  S---LDGNDSSDNELAGSKQQHSAHEKQRARIADEIRRLEAANVAKKDWMLAGEARGAER  448
                 D  DS D E   S ++ S+ EK++ ++ + IR+LE  N+A+K W L GE    +R
Sbjct  268  DEEEDDDEDSDDEEEEASPEELSSFEKRQEKLQERIRKLEEENLAEKPWQLKGEVTAKDR  327

Query  449  PMNSLIEEDLDFERVGKPVPVVTTELSGYIEELVKRRILAKEFDEVIRRRPGIPEAQTAK  508
            P NSL+EEDLDF+   KP PV+T E +  +E+++K+RI  K FD+V+R+          K
Sbjct  328  PQNSLLEEDLDFDHTAKPAPVITEETTETLEDIIKQRIKDKAFDDVVRKVKPDETPFEYK  387

Query  509  KVRFELEDTKPQQSLAELFESDHLRATDPNYVDPKNHKLLREHTEISNLWREISDRLDTL  568
            K R EL+  K ++SLAE++E ++L+       D K+ +  +EH EI  L   +  +LD L
Sbjct  388  K-RLELDQEKSKESLAEIYEKEYLKQL--ADQDEKDEEENKEHEEIKKLMDSLFLKLDAL  444

Query  569  SNWHYRPKAPQANINVITDVPTIMMEDAQPAASSAVGGSATLAPQEIYAPGDNGKVAGEV  628
            SN+H+ PK     + +++++P I ME+  P A S    ++ LAP+E+Y            
Sbjct  445  SNFHFTPKPAVPEVKIVSNLPAISMEEVAPVAVSD---ASLLAPEEVYKKPK--------  493

Query  629  TLKSGESIAKDEMTRDE  645
                G+  +K E TR +
Sbjct  494  ----GDEKSKTERTRTD  506



Lambda      K        H        a         alpha
   0.310    0.127    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906559696


Query= TCONS_00029931

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00029930

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430081 pfam08570, DUF1761, Protein of unknown function (DUF17...  109     2e-32


>CDD:430081 pfam08570, DUF1761, Protein of unknown function (DUF1761).  Family 
of conserved fungal and bacterial membrane proteins with 
unknown function.
Length=122

 Score = 109 bits (275),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 56/128 (44%), Positives = 70/128 (55%), Gaps = 6/128 (5%)

Query  14   AIAMGTIFTHTASLGILAPVFGDTYHRAQAANSKEEFIKSKEAAGAAAAWGSSLVGSAVQ  73
            A+ + TI           P+FG  + R       EEF  S      A A GSS VGS VQ
Sbjct  1    AVLVATIAAFVLGALWYGPLFGKAWMRGMTPEKLEEFGNS------ALAMGSSFVGSLVQ  54

Query  74   TYGVAALINATGTLSYKGAAYLGSLIFMASSAPSVISQIFTEKRPLDTVAVGAVSRVFET  133
             YG+AAL+NATGT SYKGAAYLG LI++   AP+++S    EKRPL  V + A   + E 
Sbjct  55   AYGLAALLNATGTDSYKGAAYLGLLIWLGFIAPTLVSNALFEKRPLKLVLIDAGYWLVEL  114

Query  134  VGLSLFLT  141
            V + L L 
Sbjct  115  VIMGLVLG  122



Lambda      K        H        a         alpha
   0.318    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00029932

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430081 pfam08570, DUF1761, Protein of unknown function (DUF17...  110     1e-32


>CDD:430081 pfam08570, DUF1761, Protein of unknown function (DUF1761).  Family 
of conserved fungal and bacterial membrane proteins with 
unknown function.
Length=122

 Score = 110 bits (277),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 56/128 (44%), Positives = 69/128 (54%), Gaps = 6/128 (5%)

Query  14   AIAMGTIFTHTASLGILAPVFGDTYHRAQAANSKEEFIKSKEAAGAAAAWGSSLVGSAVQ  73
            A+ + TI           P+FG  + R       EEF  S      A A GSS VGS VQ
Sbjct  1    AVLVATIAAFVLGALWYGPLFGKAWMRGMTPEKLEEFGNS------ALAMGSSFVGSLVQ  54

Query  74   TYGVAALINATGTLSYKGAAYLGSLIFMASSAPSFISQIFTEKRPLDTVAVGAVSRVFET  133
             YG+AAL+NATGT SYKGAAYLG LI++   AP+ +S    EKRPL  V + A   + E 
Sbjct  55   AYGLAALLNATGTDSYKGAAYLGLLIWLGFIAPTLVSNALFEKRPLKLVLIDAGYWLVEL  114

Query  134  VGLSLFLT  141
            V + L L 
Sbjct  115  VIMGLVLG  122



Lambda      K        H        a         alpha
   0.318    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00029929

Length=173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430081 pfam08570, DUF1761, Protein of unknown function (DUF17...  82.3    2e-21


>CDD:430081 pfam08570, DUF1761, Protein of unknown function (DUF1761).  Family 
of conserved fungal and bacterial membrane proteins with 
unknown function.
Length=122

 Score = 82.3 bits (204),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 45/100 (45%), Positives = 55/100 (55%), Gaps = 6/100 (6%)

Query  14   AIAMGTIFTHTASLGILAPVFGDTYHRAQAANSKEEFIKSKEAAGAAAAWGSSLVGSAVQ  73
            A+ + TI           P+FG  + R       EEF  S      A A GSS VGS VQ
Sbjct  1    AVLVATIAAFVLGALWYGPLFGKAWMRGMTPEKLEEFGNS------ALAMGSSFVGSLVQ  54

Query  74   TYGVAALINATGTLSYKGAAYLGSLIFMASSAPSVSIPIL  113
             YG+AAL+NATGT SYKGAAYLG LI++   AP++    L
Sbjct  55   AYGLAALLNATGTDSYKGAAYLGLLIWLGFIAPTLVSNAL  94



Lambda      K        H        a         alpha
   0.318    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00034703

Length=114
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430081 pfam08570, DUF1761, Protein of unknown function (DUF17...  80.3    2e-21


>CDD:430081 pfam08570, DUF1761, Protein of unknown function (DUF1761).  Family 
of conserved fungal and bacterial membrane proteins with 
unknown function.
Length=122

 Score = 80.3 bits (199),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 45/95 (47%), Positives = 54/95 (57%), Gaps = 6/95 (6%)

Query  14   AIAMGTIFTHTASLGILAPVFGDTYHRAQAANSKEEFIKSKEAAGAAAAWGSSLVGSAVQ  73
            A+ + TI           P+FG  + R       EEF  S      A A GSS VGS VQ
Sbjct  1    AVLVATIAAFVLGALWYGPLFGKAWMRGMTPEKLEEFGNS------ALAMGSSFVGSLVQ  54

Query  74   TYGVAALINATGTLSYKGAAYLGSLIFMASSAPSL  108
             YG+AAL+NATGT SYKGAAYLG LI++   AP+L
Sbjct  55   AYGLAALLNATGTDSYKGAAYLGLLIWLGFIAPTL  89



Lambda      K        H        a         alpha
   0.313    0.124    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00034704

Length=118
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430081 pfam08570, DUF1761, Protein of unknown function (DUF17...  83.0    2e-22


>CDD:430081 pfam08570, DUF1761, Protein of unknown function (DUF1761).  Family 
of conserved fungal and bacterial membrane proteins with 
unknown function.
Length=122

 Score = 83.0 bits (206),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 44/95 (46%), Positives = 52/95 (55%), Gaps = 6/95 (6%)

Query  14   AIAMGTIFTHTASLGILAPVFGDTYHRAQAANSKEEFIKSKEAAGAAAAWGSSLVGSAVQ  73
            A+ + TI           P+FG  + R       EEF  S      A A GSS VGS VQ
Sbjct  1    AVLVATIAAFVLGALWYGPLFGKAWMRGMTPEKLEEFGNS------ALAMGSSFVGSLVQ  54

Query  74   TYGVAALINATGTLSYKGAAYLGSLIFMASSAPIY  108
             YG+AAL+NATGT SYKGAAYLG LI++   AP  
Sbjct  55   AYGLAALLNATGTDSYKGAAYLGLLIWLGFIAPTL  89



Lambda      K        H        a         alpha
   0.316    0.127    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00034705

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.125    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00034706

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.125    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00029935

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398400 pfam04707, PRELI, PRELI-like family. This family inclu...  155     4e-49


>CDD:398400 pfam04707, PRELI, PRELI-like family.  This family includes a 
conserved region found in the PRELI protein and yeast YLR168C 
gene MSF1 product. The function of this protein is unknown, 
though it is thought to be involved in intra-mitochondrial 
protein sorting. This region is also found in a number of other 
eukaryotic proteins.
Length=156

 Score = 155 bits (393),  Expect = 4e-49, Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 98/158 (62%), Gaps = 6/158 (4%)

Query  15   EEVSTANWRKYCPWNDKSTHVVAVDTISRTVDPKTGILRTERLITCDQSVPQWVLSLFGG  74
            E+V+ A WR+Y P N  S HV++VD + R +D   G L TERL+T    +P+W+  L G 
Sbjct  1    EQVTAAFWRRY-P-NPYSPHVISVDVLERELDD-DGKLHTERLLTKQGRLPRWLKKLIGV  57

Query  75   SATSHVYEISYVDPGAKKVTMCSTNLTWSNVLNVRETVIYQPSSSKPELVTDFSQEAKIT  134
            + T +V E+S VDP  + +T+ + NLT+SN L+V E   Y P    P   T F QEA I+
Sbjct  58   AHTVYVVEVSVVDPKKRTLTLETRNLTFSNRLSVDERCRYTPHPENPN-WTIFDQEASIS  116

Query  135  ALCGGWQKIKNKVEEASIERFSQNAKRGREGFETVLEM  172
                G+    +KVE+ S++RFSQNAK+GREG E VL+ 
Sbjct  117  IS--GFFGFSSKVEKWSLKRFSQNAKKGREGMEYVLQK  152



Lambda      K        H        a         alpha
   0.315    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00034707

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like....  89.7    5e-22


>CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like.  This 
family includes: Cholinephosphate cytidylyltransferase; glycerol-3-phosphate 
cytidylyltransferase. It also includes putative 
adenylyltransferases, and FAD synthases.
Length=134

 Score = 89.7 bits (223),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 39/135 (29%), Positives = 57/135 (42%), Gaps = 9/135 (7%)

Query  31   WVDGCFDFSHHGHAGAMLQARRLGNE-LYVGVHSDEAILENKGPTVMTLKERVAAVEACR  89
               G FD  H GH   + QA+ L +E L VGV SDE         + + +ER+  +E  +
Sbjct  1    LFGGTFDPIHLGHLRLLEQAKELFDEDLIVGVPSDEP-PHKLKRPLFSAEERLEMLELAK  59

Query  90   WATRCIPRAPYVTSLSWVSHYGCKYVVHGDDITSD--SNGEDCYRFVKAAGR-----FRV  142
            W    I  AP+  +   +       +V G D   D     ++    VK         F  
Sbjct  60   WVDEVIVVAPWELTRELLKELNPDVLVIGADSLLDFWYELDEILGNVKLVVVVRPVFFIP  119

Query  143  VKRTPGISTTDLVGR  157
            +K T GIS+TD+  R
Sbjct  120  LKPTNGISSTDIRER  134



Lambda      K        H        a         alpha
   0.320    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 550599736


Query= TCONS_00029933

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00029934

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398400 pfam04707, PRELI, PRELI-like family. This family inclu...  155     4e-49


>CDD:398400 pfam04707, PRELI, PRELI-like family.  This family includes a 
conserved region found in the PRELI protein and yeast YLR168C 
gene MSF1 product. The function of this protein is unknown, 
though it is thought to be involved in intra-mitochondrial 
protein sorting. This region is also found in a number of other 
eukaryotic proteins.
Length=156

 Score = 155 bits (393),  Expect = 4e-49, Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 98/158 (62%), Gaps = 6/158 (4%)

Query  15   EEVSTANWRKYCPWNDKSTHVVAVDTISRTVDPKTGILRTERLITCDQSVPQWVLSLFGG  74
            E+V+ A WR+Y P N  S HV++VD + R +D   G L TERL+T    +P+W+  L G 
Sbjct  1    EQVTAAFWRRY-P-NPYSPHVISVDVLERELDD-DGKLHTERLLTKQGRLPRWLKKLIGV  57

Query  75   SATSHVYEISYVDPGAKKVTMCSTNLTWSNVLNVRETVIYQPSSSKPELVTDFSQEAKIT  134
            + T +V E+S VDP  + +T+ + NLT+SN L+V E   Y P    P   T F QEA I+
Sbjct  58   AHTVYVVEVSVVDPKKRTLTLETRNLTFSNRLSVDERCRYTPHPENPN-WTIFDQEASIS  116

Query  135  ALCGGWQKIKNKVEEASIERFSQNAKRGREGFETVLEM  172
                G+    +KVE+ S++RFSQNAK+GREG E VL+ 
Sbjct  117  IS--GFFGFSSKVEKWSLKRFSQNAKKGREGMEYVLQK  152



Lambda      K        H        a         alpha
   0.315    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00029936

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00034708

Length=292


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00029937

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398400 pfam04707, PRELI, PRELI-like family. This family inclu...  155     4e-49


>CDD:398400 pfam04707, PRELI, PRELI-like family.  This family includes a 
conserved region found in the PRELI protein and yeast YLR168C 
gene MSF1 product. The function of this protein is unknown, 
though it is thought to be involved in intra-mitochondrial 
protein sorting. This region is also found in a number of other 
eukaryotic proteins.
Length=156

 Score = 155 bits (393),  Expect = 4e-49, Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 98/158 (62%), Gaps = 6/158 (4%)

Query  15   EEVSTANWRKYCPWNDKSTHVVAVDTISRTVDPKTGILRTERLITCDQSVPQWVLSLFGG  74
            E+V+ A WR+Y P N  S HV++VD + R +D   G L TERL+T    +P+W+  L G 
Sbjct  1    EQVTAAFWRRY-P-NPYSPHVISVDVLERELDD-DGKLHTERLLTKQGRLPRWLKKLIGV  57

Query  75   SATSHVYEISYVDPGAKKVTMCSTNLTWSNVLNVRETVIYQPSSSKPELVTDFSQEAKIT  134
            + T +V E+S VDP  + +T+ + NLT+SN L+V E   Y P    P   T F QEA I+
Sbjct  58   AHTVYVVEVSVVDPKKRTLTLETRNLTFSNRLSVDERCRYTPHPENPN-WTIFDQEASIS  116

Query  135  ALCGGWQKIKNKVEEASIERFSQNAKRGREGFETVLEM  172
                G+    +KVE+ S++RFSQNAK+GREG E VL+ 
Sbjct  117  IS--GFFGFSSKVEKWSLKRFSQNAKKGREGMEYVLQK  152



Lambda      K        H        a         alpha
   0.315    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00029939

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family             148     1e-42


>CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family.  
Length=250

 Score = 148 bits (376),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 107/250 (43%), Gaps = 7/250 (3%)

Query  137  VFSTLIAAPMASATPMQILGTTGLFFTGALIMRGAGCAINDLWDRNLDPYVERTKFRPIA  196
            +    +A    +A  +  L    L   G ++ R A  A+ND +DR++D  + RT  RP+ 
Sbjct  1    LLIPALAGLALAAGGVPDLLLLLLALLGTVLARAAANALNDYYDRDIDAIMPRTPNRPLP  60

Query  197  RGALSPKKALVFTCSQLLAGLAVLLQFPSQCLWYGIPSLLLVTTYPL-AKRVTYYPQAVL  255
             G +SP++AL+F    L  GL +LL         G+ +LLL   Y L  KR T   Q V 
Sbjct  61   SGRISPREALIFALVLLALGLLLLLLLNPLTALLGLAALLLYVLYTLRLKRRTLLGQLVG  120

Query  256  GLTFSWGAIMGFPALGVDLFSNHAALEAAAALYSSCVAWTVLYDMIYAHMDIKDDVAAGI  315
            GL F    ++G+ A+   L         A  L  +   WT    +     D +DD  AGI
Sbjct  121  GLAFGLPPLLGWAAVTGSL------SPLALLLALALFLWTWAIALANDLRDREDDRKAGI  174

Query  316  KSIALRHEHNTKTVLSGLAAVQVALLATAGVAAGAGPLFYVGTCGSAAVSLGIMIWKVQL  375
            K++ +        +L  L      LL    +    G L+ +     AA++L      ++L
Sbjct  175  KTLPVVLGRKAARILLALLLAVALLLLLLLLLLLLGGLYLLLALLLAALALLYAARLLRL  234

Query  376  KNVKNCWWWF  385
            ++ K     F
Sbjct  235  RDPKKDAKAF  244



Lambda      K        H        a         alpha
   0.323    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00029940

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like....  90.5    9e-23


>CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like.  This 
family includes: Cholinephosphate cytidylyltransferase; glycerol-3-phosphate 
cytidylyltransferase. It also includes putative 
adenylyltransferases, and FAD synthases.
Length=134

 Score = 90.5 bits (225),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 39/135 (29%), Positives = 57/135 (42%), Gaps = 9/135 (7%)

Query  31   WVDGCFDFSHHGHAGAMLQARRLGNE-LYVGVHSDEAILENKGPTVMTLKERVAAVEACR  89
               G FD  H GH   + QA+ L +E L VGV SDE         + + +ER+  +E  +
Sbjct  1    LFGGTFDPIHLGHLRLLEQAKELFDEDLIVGVPSDEP-PHKLKRPLFSAEERLEMLELAK  59

Query  90   WATRCIPRAPYVTSLSWVSHYGCKYVVHGDDITSD--SNGEDCYRFVKAAGR-----FRV  142
            W    I  AP+  +   +       +V G D   D     ++    VK         F  
Sbjct  60   WVDEVIVVAPWELTRELLKELNPDVLVIGADSLLDFWYELDEILGNVKLVVVVRPVFFIP  119

Query  143  VKRTPGISTTDLVGR  157
            +K T GIS+TD+  R
Sbjct  120  LKPTNGISSTDIRER  134



Lambda      K        H        a         alpha
   0.320    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00034709

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like....  90.5    9e-23


>CDD:396172 pfam01467, CTP_transf_like, Cytidylyltransferase-like.  This 
family includes: Cholinephosphate cytidylyltransferase; glycerol-3-phosphate 
cytidylyltransferase. It also includes putative 
adenylyltransferases, and FAD synthases.
Length=134

 Score = 90.5 bits (225),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 39/135 (29%), Positives = 57/135 (42%), Gaps = 9/135 (7%)

Query  31   WVDGCFDFSHHGHAGAMLQARRLGNE-LYVGVHSDEAILENKGPTVMTLKERVAAVEACR  89
               G FD  H GH   + QA+ L +E L VGV SDE         + + +ER+  +E  +
Sbjct  1    LFGGTFDPIHLGHLRLLEQAKELFDEDLIVGVPSDEP-PHKLKRPLFSAEERLEMLELAK  59

Query  90   WATRCIPRAPYVTSLSWVSHYGCKYVVHGDDITSD--SNGEDCYRFVKAAGR-----FRV  142
            W    I  AP+  +   +       +V G D   D     ++    VK         F  
Sbjct  60   WVDEVIVVAPWELTRELLKELNPDVLVIGADSLLDFWYELDEILGNVKLVVVVRPVFFIP  119

Query  143  VKRTPGISTTDLVGR  157
            +K T GIS+TD+  R
Sbjct  120  LKPTNGISSTDIRER  134



Lambda      K        H        a         alpha
   0.320    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00029942

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426775 pfam02441, Flavoprotein, Flavoprotein. This family con...  98.2    6e-27


>CDD:426775 pfam02441, Flavoprotein, Flavoprotein.  This family contains 
diverse flavoprotein enzymes. This family includes epidermin 
biosynthesis protein, EpiD, which has been shown to be a flavoprotein 
that binds FMN. This enzyme catalyzes the removal 
of two reducing equivalents from the cysteine residue of the 
C-terminal meso-lanthionine of epidermin to form a --C==C-- 
double bond. This family also includes the B chain of dipicolinate 
synthase a small polar molecule that accumulates to 
high concentrations in bacterial endospores, and is thought 
to play a role in spore heat resistance, or the maintenance 
of heat resistance. dipicolinate synthase catalyzes the formation 
of dipicolinic acid from dihydroxydipicolinic acid. This 
family also includes phenyl-acrylic acid decarboxylase (EC:4.1.1.-).
Length=177

 Score = 98.2 bits (245),  Expect = 6e-27, Method: Composition-based stats.
 Identities = 48/130 (37%), Positives = 68/130 (52%), Gaps = 21/130 (16%)

Query  19   HILLAASGSVAAIKLPNIAEALGRHKNVCIRIIVTKSAEKFLSGQSSEQPLLNALEQLPG  78
             IL+  +GS AAIK   + E L + +   +R+I+TK+A+K ++     + L    E    
Sbjct  2    RILVGITGSSAAIKALRLLEEL-KKEGAEVRVIMTKAAKKVIT----PETLAALSE----  52

Query  79   VDAIYRDEDEWKDPWTRGEPILHIEL---RKWAHVLLVAPLSANTLAKMTMGIADNLLLS  135
                  + DE        + ILHIEL    +WA  +++AP SANTLAK+  GIADNLL  
Sbjct  53   ------NVDEDLTWRELDDDILHIELASGARWADAMVIAPASANTLAKIANGIADNLLT-  105

Query  136  VIRAWDTTGK  145
              RA D   K
Sbjct  106  --RAADVALK  113



Lambda      K        H        a         alpha
   0.316    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00029944

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family             148     1e-42


>CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family.  
Length=250

 Score = 148 bits (376),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 107/250 (43%), Gaps = 7/250 (3%)

Query  137  VFSTLIAAPMASATPMQILGTTGLFFTGALIMRGAGCAINDLWDRNLDPYVERTKFRPIA  196
            +    +A    +A  +  L    L   G ++ R A  A+ND +DR++D  + RT  RP+ 
Sbjct  1    LLIPALAGLALAAGGVPDLLLLLLALLGTVLARAAANALNDYYDRDIDAIMPRTPNRPLP  60

Query  197  RGALSPKKALVFTCSQLLAGLAVLLQFPSQCLWYGIPSLLLVTTYPL-AKRVTYYPQAVL  255
             G +SP++AL+F    L  GL +LL         G+ +LLL   Y L  KR T   Q V 
Sbjct  61   SGRISPREALIFALVLLALGLLLLLLLNPLTALLGLAALLLYVLYTLRLKRRTLLGQLVG  120

Query  256  GLTFSWGAIMGFPALGVDLFSNHAALEAAAALYSSCVAWTVLYDMIYAHMDIKDDVAAGI  315
            GL F    ++G+ A+   L         A  L  +   WT    +     D +DD  AGI
Sbjct  121  GLAFGLPPLLGWAAVTGSL------SPLALLLALALFLWTWAIALANDLRDREDDRKAGI  174

Query  316  KSIALRHEHNTKTVLSGLAAVQVALLATAGVAAGAGPLFYVGTCGSAAVSLGIMIWKVQL  375
            K++ +        +L  L      LL    +    G L+ +     AA++L      ++L
Sbjct  175  KTLPVVLGRKAARILLALLLAVALLLLLLLLLLLLGGLYLLLALLLAALALLYAARLLRL  234

Query  376  KNVKNCWWWF  385
            ++ K     F
Sbjct  235  RDPKKDAKAF  244



Lambda      K        H        a         alpha
   0.323    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00034710

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family             148     1e-42


>CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family.  
Length=250

 Score = 148 bits (376),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 107/250 (43%), Gaps = 7/250 (3%)

Query  137  VFSTLIAAPMASATPMQILGTTGLFFTGALIMRGAGCAINDLWDRNLDPYVERTKFRPIA  196
            +    +A    +A  +  L    L   G ++ R A  A+ND +DR++D  + RT  RP+ 
Sbjct  1    LLIPALAGLALAAGGVPDLLLLLLALLGTVLARAAANALNDYYDRDIDAIMPRTPNRPLP  60

Query  197  RGALSPKKALVFTCSQLLAGLAVLLQFPSQCLWYGIPSLLLVTTYPL-AKRVTYYPQAVL  255
             G +SP++AL+F    L  GL +LL         G+ +LLL   Y L  KR T   Q V 
Sbjct  61   SGRISPREALIFALVLLALGLLLLLLLNPLTALLGLAALLLYVLYTLRLKRRTLLGQLVG  120

Query  256  GLTFSWGAIMGFPALGVDLFSNHAALEAAAALYSSCVAWTVLYDMIYAHMDIKDDVAAGI  315
            GL F    ++G+ A+   L         A  L  +   WT    +     D +DD  AGI
Sbjct  121  GLAFGLPPLLGWAAVTGSL------SPLALLLALALFLWTWAIALANDLRDREDDRKAGI  174

Query  316  KSIALRHEHNTKTVLSGLAAVQVALLATAGVAAGAGPLFYVGTCGSAAVSLGIMIWKVQL  375
            K++ +        +L  L      LL    +    G L+ +     AA++L      ++L
Sbjct  175  KTLPVVLGRKAARILLALLLAVALLLLLLLLLLLLGGLYLLLALLLAALALLYAARLLRL  234

Query  376  KNVKNCWWWF  385
            ++ K     F
Sbjct  235  RDPKKDAKAF  244



Lambda      K        H        a         alpha
   0.323    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00029945

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family             148     1e-42


>CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family.  
Length=250

 Score = 148 bits (376),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 107/250 (43%), Gaps = 7/250 (3%)

Query  137  VFSTLIAAPMASATPMQILGTTGLFFTGALIMRGAGCAINDLWDRNLDPYVERTKFRPIA  196
            +    +A    +A  +  L    L   G ++ R A  A+ND +DR++D  + RT  RP+ 
Sbjct  1    LLIPALAGLALAAGGVPDLLLLLLALLGTVLARAAANALNDYYDRDIDAIMPRTPNRPLP  60

Query  197  RGALSPKKALVFTCSQLLAGLAVLLQFPSQCLWYGIPSLLLVTTYPL-AKRVTYYPQAVL  255
             G +SP++AL+F    L  GL +LL         G+ +LLL   Y L  KR T   Q V 
Sbjct  61   SGRISPREALIFALVLLALGLLLLLLLNPLTALLGLAALLLYVLYTLRLKRRTLLGQLVG  120

Query  256  GLTFSWGAIMGFPALGVDLFSNHAALEAAAALYSSCVAWTVLYDMIYAHMDIKDDVAAGI  315
            GL F    ++G+ A+   L         A  L  +   WT    +     D +DD  AGI
Sbjct  121  GLAFGLPPLLGWAAVTGSL------SPLALLLALALFLWTWAIALANDLRDREDDRKAGI  174

Query  316  KSIALRHEHNTKTVLSGLAAVQVALLATAGVAAGAGPLFYVGTCGSAAVSLGIMIWKVQL  375
            K++ +        +L  L      LL    +    G L+ +     AA++L      ++L
Sbjct  175  KTLPVVLGRKAARILLALLLAVALLLLLLLLLLLLGGLYLLLALLLAALALLYAARLLRL  234

Query  376  KNVKNCWWWF  385
            ++ K     F
Sbjct  235  RDPKKDAKAF  244



Lambda      K        H        a         alpha
   0.323    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00034711

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family             148     1e-42


>CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family.  
Length=250

 Score = 148 bits (376),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 107/250 (43%), Gaps = 7/250 (3%)

Query  137  VFSTLIAAPMASATPMQILGTTGLFFTGALIMRGAGCAINDLWDRNLDPYVERTKFRPIA  196
            +    +A    +A  +  L    L   G ++ R A  A+ND +DR++D  + RT  RP+ 
Sbjct  1    LLIPALAGLALAAGGVPDLLLLLLALLGTVLARAAANALNDYYDRDIDAIMPRTPNRPLP  60

Query  197  RGALSPKKALVFTCSQLLAGLAVLLQFPSQCLWYGIPSLLLVTTYPL-AKRVTYYPQAVL  255
             G +SP++AL+F    L  GL +LL         G+ +LLL   Y L  KR T   Q V 
Sbjct  61   SGRISPREALIFALVLLALGLLLLLLLNPLTALLGLAALLLYVLYTLRLKRRTLLGQLVG  120

Query  256  GLTFSWGAIMGFPALGVDLFSNHAALEAAAALYSSCVAWTVLYDMIYAHMDIKDDVAAGI  315
            GL F    ++G+ A+   L         A  L  +   WT    +     D +DD  AGI
Sbjct  121  GLAFGLPPLLGWAAVTGSL------SPLALLLALALFLWTWAIALANDLRDREDDRKAGI  174

Query  316  KSIALRHEHNTKTVLSGLAAVQVALLATAGVAAGAGPLFYVGTCGSAAVSLGIMIWKVQL  375
            K++ +        +L  L      LL    +    G L+ +     AA++L      ++L
Sbjct  175  KTLPVVLGRKAARILLALLLAVALLLLLLLLLLLLGGLYLLLALLLAALALLYAARLLRL  234

Query  376  KNVKNCWWWF  385
            ++ K     F
Sbjct  235  RDPKKDAKAF  244



Lambda      K        H        a         alpha
   0.323    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00029947

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426775 pfam02441, Flavoprotein, Flavoprotein. This family con...  100     9e-28


>CDD:426775 pfam02441, Flavoprotein, Flavoprotein.  This family contains 
diverse flavoprotein enzymes. This family includes epidermin 
biosynthesis protein, EpiD, which has been shown to be a flavoprotein 
that binds FMN. This enzyme catalyzes the removal 
of two reducing equivalents from the cysteine residue of the 
C-terminal meso-lanthionine of epidermin to form a --C==C-- 
double bond. This family also includes the B chain of dipicolinate 
synthase a small polar molecule that accumulates to 
high concentrations in bacterial endospores, and is thought 
to play a role in spore heat resistance, or the maintenance 
of heat resistance. dipicolinate synthase catalyzes the formation 
of dipicolinic acid from dihydroxydipicolinic acid. This 
family also includes phenyl-acrylic acid decarboxylase (EC:4.1.1.-).
Length=177

 Score = 100 bits (251),  Expect = 9e-28, Method: Composition-based stats.
 Identities = 51/151 (34%), Positives = 74/151 (49%), Gaps = 28/151 (19%)

Query  19   HILLAASGSVAAIKLPNIAEALGRHKNVCIRIIVTKSAEKFLSGQSSEQPLLNALEQLPG  78
             IL+  +GS AAIK   + E L + +   +R+I+TK+A+K ++     + L    E    
Sbjct  2    RILVGITGSSAAIKALRLLEEL-KKEGAEVRVIMTKAAKKVIT----PETLAALSE----  52

Query  79   VDAIYRDEDEWKDPWTRGEPILHIEL---RKWAHVLLVAPLSANTLAKMTMGIADNLLLS  135
                  + DE        + ILHIEL    +WA  +++AP SANTLAK+  GIADNLL  
Sbjct  53   ------NVDEDLTWRELDDDILHIELASGARWADAMVIAPASANTLAKIANGIADNLLT-  105

Query  136  VIRAWDTTGKVDSG-------LKDRKPVVFV  159
              RA D   K           L  +KP++  
Sbjct  106  --RAADVALKERRPHLENMLTLTAKKPIIIA  134



Lambda      K        H        a         alpha
   0.318    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00029946

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426775 pfam02441, Flavoprotein, Flavoprotein. This family con...  120     2e-35


>CDD:426775 pfam02441, Flavoprotein, Flavoprotein.  This family contains 
diverse flavoprotein enzymes. This family includes epidermin 
biosynthesis protein, EpiD, which has been shown to be a flavoprotein 
that binds FMN. This enzyme catalyzes the removal 
of two reducing equivalents from the cysteine residue of the 
C-terminal meso-lanthionine of epidermin to form a --C==C-- 
double bond. This family also includes the B chain of dipicolinate 
synthase a small polar molecule that accumulates to 
high concentrations in bacterial endospores, and is thought 
to play a role in spore heat resistance, or the maintenance 
of heat resistance. dipicolinate synthase catalyzes the formation 
of dipicolinic acid from dihydroxydipicolinic acid. This 
family also includes phenyl-acrylic acid decarboxylase (EC:4.1.1.-).
Length=177

 Score = 120 bits (303),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 63/177 (36%), Positives = 90/177 (51%), Gaps = 29/177 (16%)

Query  19   HILLAASGSVAAIKLPNIAEALGRHKNVCIRIIVTKSAEKFLSGQSSEQPLLNALEQLPG  78
             IL+  +GS AAIK   + E L + +   +R+I+TK+A+K ++     + L    E    
Sbjct  2    RILVGITGSSAAIKALRLLEEL-KKEGAEVRVIMTKAAKKVIT----PETLAALSE----  52

Query  79   VDAIYRDEDEWKDPWTRGEPILHIEL---RKWAHVLLVAPLSANTLAKMTMGIADNLLLS  135
                  + DE        + ILHIEL    +WA  +++AP SANTLAK+  GIADNLL  
Sbjct  53   ------NVDEDLTWRELDDDILHIELASGARWADAMVIAPASANTLAKIANGIADNLLT-  105

Query  136  VIRAWDTTGKVDSG-------LKDRKPVVFVAPGENTAMWNHPATKRQLKILTDEWG  185
              RA D   K           L  +KP++  AP  NTAM+ +PAT   L+ L  + G
Sbjct  106  --RAADVALKERRPHLENMLTLTAKKPIII-APAMNTAMYENPATLENLEDLKADGG  159



Lambda      K        H        a         alpha
   0.317    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00029948

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family             148     1e-42


>CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family.  
Length=250

 Score = 148 bits (376),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 107/250 (43%), Gaps = 7/250 (3%)

Query  137  VFSTLIAAPMASATPMQILGTTGLFFTGALIMRGAGCAINDLWDRNLDPYVERTKFRPIA  196
            +    +A    +A  +  L    L   G ++ R A  A+ND +DR++D  + RT  RP+ 
Sbjct  1    LLIPALAGLALAAGGVPDLLLLLLALLGTVLARAAANALNDYYDRDIDAIMPRTPNRPLP  60

Query  197  RGALSPKKALVFTCSQLLAGLAVLLQFPSQCLWYGIPSLLLVTTYPL-AKRVTYYPQAVL  255
             G +SP++AL+F    L  GL +LL         G+ +LLL   Y L  KR T   Q V 
Sbjct  61   SGRISPREALIFALVLLALGLLLLLLLNPLTALLGLAALLLYVLYTLRLKRRTLLGQLVG  120

Query  256  GLTFSWGAIMGFPALGVDLFSNHAALEAAAALYSSCVAWTVLYDMIYAHMDIKDDVAAGI  315
            GL F    ++G+ A+   L         A  L  +   WT    +     D +DD  AGI
Sbjct  121  GLAFGLPPLLGWAAVTGSL------SPLALLLALALFLWTWAIALANDLRDREDDRKAGI  174

Query  316  KSIALRHEHNTKTVLSGLAAVQVALLATAGVAAGAGPLFYVGTCGSAAVSLGIMIWKVQL  375
            K++ +        +L  L      LL    +    G L+ +     AA++L      ++L
Sbjct  175  KTLPVVLGRKAARILLALLLAVALLLLLLLLLLLLGGLYLLLALLLAALALLYAARLLRL  234

Query  376  KNVKNCWWWF  385
            ++ K     F
Sbjct  235  RDPKKDAKAF  244



Lambda      K        H        a         alpha
   0.323    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00029949

Length=755


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 961855472


Query= TCONS_00034712

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3              77.7    1e-16


>CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3.  
Length=369

 Score = 77.7 bits (191),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 30/104 (29%), Positives = 46/104 (44%), Gaps = 4/104 (4%)

Query  192  ADWFQEGQYVDARSYSKGKGFAGVMKRHGFHGQDRSHGVSLTHRSLGSAGPSQGGGSRVY  251
            A  F++G+ +D    +KGKGF GV KR G     R        R +   G      +RV+
Sbjct  209  AAVFRQGEMIDVIGVTKGKGFQGVTKRWGVKKLPRKTH--RGLRKVACIGA--WHPARVW  264

Query  252  PGKKMAGNMGNEQNTVQNLKVLKVDADNGIVVVNGMFSATQRSI  295
            P    AG MG    T  N K+ ++   +     +  F  T+++I
Sbjct  265  PTVARAGQMGYHHRTELNKKIYRIGTGDDGKNASTEFDLTEKTI  308



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00029950

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3              77.7    1e-16


>CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3.  
Length=369

 Score = 77.7 bits (191),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 30/104 (29%), Positives = 46/104 (44%), Gaps = 4/104 (4%)

Query  192  ADWFQEGQYVDARSYSKGKGFAGVMKRHGFHGQDRSHGVSLTHRSLGSAGPSQGGGSRVY  251
            A  F++G+ +D    +KGKGF GV KR G     R        R +   G      +RV+
Sbjct  209  AAVFRQGEMIDVIGVTKGKGFQGVTKRWGVKKLPRKTH--RGLRKVACIGA--WHPARVW  264

Query  252  PGKKMAGNMGNEQNTVQNLKVLKVDADNGIVVVNGMFSATQRSI  295
            P    AG MG    T  N K+ ++   +     +  F  T+++I
Sbjct  265  PTVARAGQMGYHHRTELNKKIYRIGTGDDGKNASTEFDLTEKTI  308



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00029951

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430157 pfam08695, Coa1, Cytochrome oxidase complex assembly p...  141     8e-45


>CDD:430157 pfam08695, Coa1, Cytochrome oxidase complex assembly protein 
1.  Coa1 is an inner mitochondrial membrane protein that associates 
with Shy1 and is required for cytochrome oxidase complex 
IV assembly. It contains a conserved hydrophobic segment 
(amino acids 74-92) with the potential to form a membrane-spanning 
helix. The N-terminus of Coa1 is rich in positively 
charged amino acids and could form an amphipathic alpha helix, 
characteristic of a mitochondrial presequence. A cleavage 
site for the mitochondrial processing peptidase is predicted 
adjacent to the presequence. Upon in vitro import into mitochondria, 
Coa1 is processed to a mature form, indicating that 
it possesses a cleavable presequence. The eukaryotic cytochrome 
oxidase complex consists of 12-13 subunits, with three 
mitochondrial encoded subunits, Cox1-Cox3, forming the core 
enzyme. Translation of the Cox1 transcript requires the two 
promoters, Pet309 and Mss51, and the latter has an additional 
role in translational elongation. Coa1 is necessary for 
linking the activity of Mss51 to Cox1 insertion into the assembly 
complex.
Length=117

 Score = 141 bits (358),  Expect = 8e-45, Method: Composition-based stats.
 Identities = 52/96 (54%), Positives = 64/96 (67%), Gaps = 0/96 (0%)

Query  60   IKTLPIFVVVVGAAMLGIFNYQKSSSSVVSSTLYALRTSPRAREILGDEIYFAQKIPWIS  119
              T  IFV+ VGAA+  IFNY+K+SS +  STLY LR SP ARE+LGD I F    PWIS
Sbjct  1    RVTFAIFVIGVGAALAYIFNYEKTSSPIYRSTLYQLRRSPEARELLGDNIPFKSGWPWIS  60

Query  120  GEMNQLHGRIDISFWVKGTKGQGKMRFRSIRPDRMS  155
            GE+N + GRIDISF VKG+KG G +   + R  +  
Sbjct  61   GELNTVQGRIDISFPVKGSKGSGTVYLTATRESKRH  96



Lambda      K        H        a         alpha
   0.326    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00029952

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3              77.7    1e-16


>CDD:395233 pfam00297, Ribosomal_L3, Ribosomal protein L3.  
Length=369

 Score = 77.7 bits (191),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 30/104 (29%), Positives = 46/104 (44%), Gaps = 4/104 (4%)

Query  192  ADWFQEGQYVDARSYSKGKGFAGVMKRHGFHGQDRSHGVSLTHRSLGSAGPSQGGGSRVY  251
            A  F++G+ +D    +KGKGF GV KR G     R        R +   G      +RV+
Sbjct  209  AAVFRQGEMIDVIGVTKGKGFQGVTKRWGVKKLPRKTH--RGLRKVACIGA--WHPARVW  264

Query  252  PGKKMAGNMGNEQNTVQNLKVLKVDADNGIVVVNGMFSATQRSI  295
            P    AG MG    T  N K+ ++   +     +  F  T+++I
Sbjct  265  PTVARAGQMGYHHRTELNKKIYRIGTGDDGKNASTEFDLTEKTI  308



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00034713

Length=581
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               67.8    1e-14
CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies)            56.1    6e-11


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 67.8 bits (166),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 29/95 (31%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query  63   LNLACQHGSIPIVRMLLERNAQL-LPDAEGLYPQHMVARASQPPELLLLLKQHGADMNQR  121
            L+LA ++G++ +V++LLE  A   L D  G    H+ A+      + LLL+      +  
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH----ADVN  56

Query  122  DKLYQWTPLFHAASEGCVNCLRTLLELGVDASAVD  156
             K    T L +AA  G +  ++ LLE G D +  D
Sbjct  57   LKDNGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 60.5 bits (147),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 30/82 (37%), Positives = 45/82 (55%), Gaps = 3/82 (4%)

Query  97   MVARASQPPELLLLLKQHGADMNQRDKLYQWTPLFHAASEGCVNCLRTLLELGVDASAVD  156
             +A  +   EL+ LL ++GAD N +DK    T L  AA  G +  ++ LLE       + 
Sbjct  2    HLAAKNGNLELVKLLLENGADANLQDKNG-RTALHLAAKNGHLEIVKLLLEHA--DVNLK  58

Query  157  EKGLSAMYYAAWEGHLECMLLL  178
            + G +A++YAA  GHLE + LL
Sbjct  59   DNGRTALHYAARSGHLEIVKLL  80


 Score = 56.7 bits (137),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 3/85 (4%)

Query  1   MHGRVDMVRELLAVGPDTVDTADHNNFTPLIHSIVKDQLACAEQLLQHNARIGPASESDH  60
            +G +++V+ LL  G D  +  D N  T L  +     L   + LL+H        ++  
Sbjct  6   KNGNLELVKLLLENGAD-ANLQDKNGRTALHLAAKNGHLEIVKLLLEHAD--VNLKDNGR  62

Query  61  IPLNLACQHGSIPIVRMLLERNAQL  85
             L+ A + G + IV++LLE+ A +
Sbjct  63  TALHYAARSGHLEIVKLLLEKGADI  87


>CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies).  
Length=54

 Score = 56.1 bits (136),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 0/53 (0%)

Query  126  QWTPLFHAASEGCVNCLRTLLELGVDASAVDEKGLSAMYYAAWEGHLECMLLL  178
            + T L  AA+ G +  LR LLE G D +AVD  G +A+++AA  G++E + LL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLL  53



Lambda      K        H        a         alpha
   0.321    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00029953

Length=581
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               67.8    1e-14
CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies)            56.1    6e-11


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 67.8 bits (166),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 29/95 (31%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query  63   LNLACQHGSIPIVRMLLERNAQL-LPDAEGLYPQHMVARASQPPELLLLLKQHGADMNQR  121
            L+LA ++G++ +V++LLE  A   L D  G    H+ A+      + LLL+      +  
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH----ADVN  56

Query  122  DKLYQWTPLFHAASEGCVNCLRTLLELGVDASAVD  156
             K    T L +AA  G +  ++ LLE G D +  D
Sbjct  57   LKDNGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 60.5 bits (147),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 30/82 (37%), Positives = 45/82 (55%), Gaps = 3/82 (4%)

Query  97   MVARASQPPELLLLLKQHGADMNQRDKLYQWTPLFHAASEGCVNCLRTLLELGVDASAVD  156
             +A  +   EL+ LL ++GAD N +DK    T L  AA  G +  ++ LLE       + 
Sbjct  2    HLAAKNGNLELVKLLLENGADANLQDKNG-RTALHLAAKNGHLEIVKLLLEHA--DVNLK  58

Query  157  EKGLSAMYYAAWEGHLECMLLL  178
            + G +A++YAA  GHLE + LL
Sbjct  59   DNGRTALHYAARSGHLEIVKLL  80


 Score = 56.7 bits (137),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 3/85 (4%)

Query  1   MHGRVDMVRELLAVGPDTVDTADHNNFTPLIHSIVKDQLACAEQLLQHNARIGPASESDH  60
            +G +++V+ LL  G D  +  D N  T L  +     L   + LL+H        ++  
Sbjct  6   KNGNLELVKLLLENGAD-ANLQDKNGRTALHLAAKNGHLEIVKLLLEHAD--VNLKDNGR  62

Query  61  IPLNLACQHGSIPIVRMLLERNAQL  85
             L+ A + G + IV++LLE+ A +
Sbjct  63  TALHYAARSGHLEIVKLLLEKGADI  87


>CDD:372654 pfam13637, Ank_4, Ankyrin repeats (many copies).  
Length=54

 Score = 56.1 bits (136),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 0/53 (0%)

Query  126  QWTPLFHAASEGCVNCLRTLLELGVDASAVDEKGLSAMYYAAWEGHLECMLLL  178
            + T L  AA+ G +  LR LLE G D +AVD  G +A+++AA  G++E + LL
Sbjct  1    ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLL  53



Lambda      K        H        a         alpha
   0.321    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00029954

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429191 pfam06916, DUF1279, Protein of unknown function (DUF12...  56.5    2e-11


>CDD:429191 pfam06916, DUF1279, Protein of unknown function (DUF1279).  This 
family represents the C-terminus (approx. 120 residues) 
of a number of eukaryotic proteins of unknown function.
Length=88

 Score = 56.5 bits (137),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query  113  QRLKKLSREYGWAALGVYLLLSAMDFPFCFIAVRHLGAERIGHYEHVV  160
            QRLK+L ++YG+ ALGV+  +S   F   ++ V   G + +      +
Sbjct  1    QRLKELFKKYGYVALGVHFSISLASFGIFYLLV-SSGVD-VIALLEKL  46



Lambda      K        H        a         alpha
   0.317    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00029955

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.125    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00029956

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.124    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00029958

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.122    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00029959

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            106     1e-25


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 106 bits (267),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 134/385 (35%), Gaps = 46/385 (12%)

Query  154  TTFNATFTSSIYSTANSVVSSRFHVSTEVGTLGLSLYVLGFACGPTFFSPLSELQGRRLP  213
                A   S +      +++    +S     L L+L+ LG+A        LS+  GRR  
Sbjct  5    AFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRV  64

Query  214  ILVGMFGFAVFQFGVATAENLQTIIICRFFGGFFGSCPIAVVAAVFSDIYDNRHRGLAIT  273
            +L+G+  FA+    +  A +L  +++ R   G           A+ +D +    RG A+ 
Sbjct  65   LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALG  124

Query  274  VFTMTVFTGPLFAPFIGGFIVESYLGWRWTEYLTGIMGASAFVLDLFFLEETYPPVVLVG  333
            + +     G    P +GG +  S  GWR    +  I+   A VL L              
Sbjct  125  LVSAGFGLGAALGPLLGGLLA-SLFGWRAAFLILAILSLLAAVLLLLPRPPPESK-----  178

Query  334  KAAELRRRTRNWGIHAKQEEIEVEFGELIRKNFSRPLRILFTEPIVLLLSIYMAFLYGLL  393
                                   +  E  R +     + L  +P++ L  +    L+G  
Sbjct  179  ---------------------RPKPAEEARLSLIVAWKALLRDPVLWL--LLALLLFGFA  215

Query  394  YLFLTAYPIVFQRIHGFNKGVGGLPYFGIIIGEFLGGIFIMLLQPWYNRQLSAYKDIPIP  453
            +  L  Y  ++Q + G +  + GL      +G  LG I  +LL    +R           
Sbjct  216  FFGLLTYLPLYQEVLGLSALLAGLLLG---LGGLLGAIGRLLLGRLSDR--------LGR  264

Query  454  EWRLPPAIIGGVAFSGGLFWFGWSGYRSDIHWIVPTLSGLLTGFGLFCIFLQCLNYIVDA  513
              RL  A++  +  + GL     +     +   +     LL GFG   +F      + D 
Sbjct  265  RRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-----LLLGFGFGLVFPALNALVSDL  319

Query  514  YLV-FAASALAANSVLRSIAGAGFP  537
                   +A    +   S+ GA  P
Sbjct  320  APKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 759169424


Query= TCONS_00034715

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00029963

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463731 pfam12848, ABC_tran_Xtn, ABC transporter. This domain ...  115     7e-33
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  117     1e-32


>CDD:463731 pfam12848, ABC_tran_Xtn, ABC transporter.  This domain is an 
extension of some members of pfam00005 and other ABC-transporter 
families.
Length=85

 Score = 115 bits (291),  Expect = 7e-33, Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query  39   VHQHSERLDYYKGANFDSFYATKEERKKIAKREYEKQMAERAHLQAFIDKFRYNAAKSSE  98
            V     +L  YKG N+ +F   KEER +  ++ YEKQ  E   L+ FID+FR  A+K+ +
Sbjct  1    VELERGKLTTYKG-NYSTFLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQ  59

Query  99   AQSRIKKLERMPVLEPPESDY-VVHF  123
            AQSRIK LE+M  +E PE D   + F
Sbjct  60   AQSRIKALEKMERIEKPERDKPKLRF  85


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 117 bits (295),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 52/150 (35%), Positives = 68/150 (45%), Gaps = 18/150 (12%)

Query  152  LRNVELDVQLDSRIGIVGPNGAGKTTVLKLLTGQLQPTSGLIS-----------THARLR  200
            L+NV L +     + +VGPNGAGK+T+LKL+ G L PT G I               R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  201  IGYFAQHHVDALDLT-------TSAVSFMAKTYPGKTDEEYRRHLGAFGITGTTGLQRME  253
            IGY  Q       LT          +  ++K       EE    LG   +      +R  
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGERPG  120

Query  254  LLSGGQKSRVAFACLSLTNPHILVLDEPSN  283
             LSGGQ+ RVA A   LT P +L+LDEP+ 
Sbjct  121  TLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.318    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00029965

Length=457
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  104     3e-27


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 104 bits (262),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 75/185 (41%), Gaps = 38/185 (21%)

Query  214  LTDASLTLAYGRRYGLVGQNGIGKSTLLRALSRREVAIPSHISILHVEQEITGDDTPAIQ  273
            L + SLTL  G    LVG NG GKSTLL+ ++         I +    Q++T D+  +  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDG--QDLTDDERKS--  56

Query  274  AVLDADVWRKRLLAEQEKISKQLAAIEAERSSMADTSKDAARLDHEREGLDITLNDIHSK  333
                    RK            +  +  +       +         RE L + L      
Sbjct  57   -------LRKE-----------IGYVFQDPQLFPRLTV--------RENLRLGLL-----  85

Query  334  LAEMESDKAESRAASILAGLG---FSPERQQYPTKTFSGGWRMRLALARALFCEPDLLLL  390
            L  +   + ++RA   L  LG    +         T SGG R R+A+ARAL  +P LLLL
Sbjct  86   LKGLSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLL  145

Query  391  DEPSN  395
            DEP+ 
Sbjct  146  DEPTA  150



Lambda      K        H        a         alpha
   0.313    0.129    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 562869368


Query= TCONS_00029960

Length=668
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463731 pfam12848, ABC_tran_Xtn, ABC transporter. This domain ...  109     3e-29
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  105     5e-27


>CDD:463731 pfam12848, ABC_tran_Xtn, ABC transporter.  This domain is an 
extension of some members of pfam00005 and other ABC-transporter 
families.
Length=85

 Score = 109 bits (274),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query  434  VHQHSERLDYYKGANFDSFYATKEERKKIAKREYEKQMAERAHLQAFIDKFRYNAAKSSE  493
            V     +L  YKG N+ +F   KEER +  ++ YEKQ  E   L+ FID+FR  A+K+ +
Sbjct  1    VELERGKLTTYKG-NYSTFLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQ  59

Query  494  AQSRIKKLERMPVLEPPESDY-VVHF  518
            AQSRIK LE+M  +E PE D   + F
Sbjct  60   AQSRIKALEKMERIEKPERDKPKLRF  85


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 105 bits (264),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 75/185 (41%), Gaps = 38/185 (21%)

Query  214  LTDASLTLAYGRRYGLVGQNGIGKSTLLRALSRREVAIPSHISILHVEQEITGDDTPAIQ  273
            L + SLTL  G    LVG NG GKSTLL+ ++         I +    Q++T D+  +  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDG--QDLTDDERKS--  56

Query  274  AVLDADVWRKRLLAEQEKISKQLAAIEAERSSMADTSKDAARLDHEREGLDITLNDIHSK  333
                    RK            +  +  +       +         RE L + L      
Sbjct  57   -------LRKE-----------IGYVFQDPQLFPRLTV--------RENLRLGLL-----  85

Query  334  LAEMESDKAESRAASILAGLG---FSPERQQYPTKTFSGGWRMRLALARALFCEPDLLLL  390
            L  +   + ++RA   L  LG    +         T SGG R R+A+ARAL  +P LLLL
Sbjct  86   LKGLSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLL  145

Query  391  DEPSN  395
            DEP+ 
Sbjct  146  DEPTA  150


 Score = 98.1 bits (245),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 47/140 (34%), Positives = 60/140 (43%), Gaps = 18/140 (13%)

Query  547  LRNVELDVQLDSRIGIVGPNGAGKTTVLKLLTGQLQPTSGLIS-----------THARLR  595
            L+NV L +     + +VGPNGAGK+T+LKL+ G L PT G I               R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  596  IGYFAQHHVDALDLT-------TSAVSFMAKTYPGKTDEEYRRHLGACGITGTTGLQRME  648
            IGY  Q       LT          +  ++K       EE    LG   +      +R  
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGERPG  120

Query  649  LLSGGQKSRVAFACLSLTNP  668
             LSGGQ+ RVA A   LT P
Sbjct  121  TLSGGQRQRVAIARALLTKP  140



Lambda      K        H        a         alpha
   0.315    0.130    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 848004250


Query= TCONS_00034716

Length=749
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  115     1e-30
CDD:463731 pfam12848, ABC_tran_Xtn, ABC transporter. This domain ...  111     6e-30


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 115 bits (291),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 52/150 (35%), Positives = 68/150 (45%), Gaps = 18/150 (12%)

Query  547  LRNVELDVQLDSRIGIVGPNGAGKTTVLKLLTGQLQPTSGLIS-----------THARLR  595
            L+NV L +     + +VGPNGAGK+T+LKL+ G L PT G I               R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  596  IGYFAQHHVDALDLT-------TSAVSFMAKTYPGKTDEEYRRHLGAFGITGTTGLQRME  648
            IGY  Q       LT          +  ++K       EE    LG   +      +R  
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGERPG  120

Query  649  LLSGGQKSRVAFACLSLTNPHILVLDEPSN  678
             LSGGQ+ RVA A   LT P +L+LDEP+ 
Sbjct  121  TLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 105 bits (264),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 78/187 (42%), Gaps = 42/187 (22%)

Query  214  LTDASLTLAYGRRYGLVGQNGIGKSTLLRALSRREVAIPSHISILHVEQEVTGDDTPAIQ  273
            L + SLTL  G    LVG NG GKSTLL+ ++         I +    Q++T D+  +  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDG--QDLTDDERKS--  56

Query  274  AVLDADVWRKRL--LAEQEEISKQLAAIEAERSSMADTSKDAARLDHEREGLDITLNDIH  331
                    RK +  + +  ++  +L                       RE L + L    
Sbjct  57   -------LRKEIGYVFQDPQLFPRLTV---------------------RENLRLGLL---  85

Query  332  SKLAEMESDKAESRAASILAGLG---FSPERQQYPTKTFSGGWRMRLALARALFCEPDLL  388
              L  +   + ++RA   L  LG    +         T SGG R R+A+ARAL  +P LL
Sbjct  86   --LKGLSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLL  143

Query  389  LLDEPSN  395
            LLDEP+ 
Sbjct  144  LLDEPTA  150


>CDD:463731 pfam12848, ABC_tran_Xtn, ABC transporter.  This domain is an 
extension of some members of pfam00005 and other ABC-transporter 
families.
Length=85

 Score = 111 bits (280),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query  434  VHQHSERLDYYKGANFDSFYATKEERKKIAKREYEKQMAERAHLQAFIDKFRYNAAKSSE  493
            V     +L  YKG N+ +F   KEER +  ++ YEKQ  E   L+ FID+FR  A+K+ +
Sbjct  1    VELERGKLTTYKG-NYSTFLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQ  59

Query  494  AQSRIKKLERMPVLEPPESDY-VVHF  518
            AQSRIK LE+M  +E PE D   + F
Sbjct  60   AQSRIKALEKMERIEKPERDKPKLRF  85



Lambda      K        H        a         alpha
   0.315    0.130    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 953124560


Query= TCONS_00029962

Length=751
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  115     1e-30
CDD:463731 pfam12848, ABC_tran_Xtn, ABC transporter. This domain ...  111     8e-30


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 115 bits (291),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 52/150 (35%), Positives = 68/150 (45%), Gaps = 18/150 (12%)

Query  547  LRNVELDVQLDSRIGIVGPNGAGKTTVLKLLTGQLQPTSGLIS-----------THARLR  595
            L+NV L +     + +VGPNGAGK+T+LKL+ G L PT G I               R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  596  IGYFAQHHVDALDLT-------TSAVSFMAKTYPGKTDEEYRRHLGAFGITGTTGLQRME  648
            IGY  Q       LT          +  ++K       EE    LG   +      +R  
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGERPG  120

Query  649  LLSGGQKSRVAFACLSLTNPHILVLDEPSN  678
             LSGGQ+ RVA A   LT P +L+LDEP+ 
Sbjct  121  TLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 105 bits (265),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 75/185 (41%), Gaps = 38/185 (21%)

Query  214  LTDASLTLAYGRRYGLVGQNGIGKSTLLRALSRREVAIPSHISILHVEQEITGDDTPAIQ  273
            L + SLTL  G    LVG NG GKSTLL+ ++         I +    Q++T D+  +  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDG--QDLTDDERKS--  56

Query  274  AVLDADVWRKRLLAEQEKISKQLAAIEAERSSMADTSKDAARLDHEREGLDITLNDIHSK  333
                    RK            +  +  +       +         RE L + L      
Sbjct  57   -------LRKE-----------IGYVFQDPQLFPRLTV--------RENLRLGLL-----  85

Query  334  LAEMESDKAESRAASILAGLG---FSPERQQYPTKTFSGGWRMRLALARALFCEPDLLLL  390
            L  +   + ++RA   L  LG    +         T SGG R R+A+ARAL  +P LLLL
Sbjct  86   LKGLSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLL  145

Query  391  DEPSN  395
            DEP+ 
Sbjct  146  DEPTA  150


>CDD:463731 pfam12848, ABC_tran_Xtn, ABC transporter.  This domain is an 
extension of some members of pfam00005 and other ABC-transporter 
families.
Length=85

 Score = 111 bits (279),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query  434  VHQHSERLDYYKGANFDSFYATKEERKKIAKREYEKQMAERAHLQAFIDKFRYNAAKSSE  493
            V     +L  YKG N+ +F   KEER +  ++ YEKQ  E   L+ FID+FR  A+K+ +
Sbjct  1    VELERGKLTTYKG-NYSTFLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQ  59

Query  494  AQSRIKKLERMPVLEPPESDY-VVHF  518
            AQSRIK LE+M  +E PE D   + F
Sbjct  60   AQSRIKALEKMERIEKPERDKPKLRF  85



Lambda      K        H        a         alpha
   0.315    0.130    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 956034864


Query= TCONS_00029961

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  105     3e-27


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 105 bits (263),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 75/185 (41%), Gaps = 38/185 (21%)

Query  214  LTDASLTLAYGRRYGLVGQNGIGKSTLLRALSRREVAIPSHISILHVEQEITGDDTPAIQ  273
            L + SLTL  G    LVG NG GKSTLL+ ++         I +    Q++T D+  +  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDG--QDLTDDERKS--  56

Query  274  AVLDADVWRKRLLAEQEKISKQLAAIEAERSSMADTSKDAARLDHEREGLDITLNDIHSK  333
                    RK            +  +  +       +         RE L + L      
Sbjct  57   -------LRKE-----------IGYVFQDPQLFPRLTV--------RENLRLGLL-----  85

Query  334  LAEMESDKAESRAASILAGLG---FSPERQQYPTKTFSGGWRMRLALARALFCEPDLLLL  390
            L  +   + ++RA   L  LG    +         T SGG R R+A+ARAL  +P LLLL
Sbjct  86   LKGLSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLL  145

Query  391  DEPSN  395
            DEP+ 
Sbjct  146  DEPTA  150



Lambda      K        H        a         alpha
   0.314    0.129    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 620767060


Query= TCONS_00029964

Length=295


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00034717

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463731 pfam12848, ABC_tran_Xtn, ABC transporter. This domain ...  114     6e-32
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  116     8e-32


>CDD:463731 pfam12848, ABC_tran_Xtn, ABC transporter.  This domain is an 
extension of some members of pfam00005 and other ABC-transporter 
families.
Length=85

 Score = 114 bits (289),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query  129  VHQHSERLDYYKGANFDSFYATKEERKKIAKREYEKQMAERAHLQAFIDKFRYNAAKSSE  188
            V     +L  YKG N+ +F   KEER +  ++ YEKQ  E   L+ FID+FR  A+K+ +
Sbjct  1    VELERGKLTTYKG-NYSTFLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQ  59

Query  189  AQSRIKKLERMPVLEPPESDY-VVHF  213
            AQSRIK LE+M  +E PE D   + F
Sbjct  60   AQSRIKALEKMERIEKPERDKPKLRF  85


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 116 bits (294),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 52/150 (35%), Positives = 68/150 (45%), Gaps = 18/150 (12%)

Query  242  LRNVELDVQLDSRIGIVGPNGAGKTTVLKLLTGQLQPTSGLIS-----------THARLR  290
            L+NV L +     + +VGPNGAGK+T+LKL+ G L PT G I               R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  291  IGYFAQHHVDALDLT-------TSAVSFMAKTYPGKTDEEYRRHLGAFGITGTTGLQRME  343
            IGY  Q       LT          +  ++K       EE    LG   +      +R  
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGERPG  120

Query  344  LLSGGQKSRVAFACLSLTNPHILVLDEPSN  373
             LSGGQ+ RVA A   LT P +L+LDEP+ 
Sbjct  121  TLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 72.3 bits (178),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (5%)

Query  29   LAEMESDKAESRAASILAGLG---FSPERQQYPTKTFSGGWRMRLALARALFCEPDLLLL  85
            L  +   + ++RA   L  LG    +         T SGG R R+A+ARAL  +P LLLL
Sbjct  86   LKGLSKREKDARAEEALEKLGLGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLL  145

Query  86   DEPSN  90
            DEP+ 
Sbjct  146  DEPTA  150



Lambda      K        H        a         alpha
   0.318    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00029966

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         160     7e-47


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 160 bits (407),  Expect = 7e-47, Method: Composition-based stats.
 Identities = 87/247 (35%), Positives = 124/247 (50%), Gaps = 27/247 (11%)

Query  1    MDRIKPSVDATRIPWLRKVAQRAQDLFLVGGNRRALIIATMLQGLQQLCGFNSLMYFSAT  60
             D ++   +A +  W          LF     R+ L+I  MLQ  QQL G N++ Y+S T
Sbjct  228  KDSLEAGQEAEKASWKE--------LFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTT  279

Query  61   IFSMLAFSSPTLTSLSVAVTNFIFTLLAFALIDRIGRRRILLYSIPVMSASLIVCALAFG  120
            IF  L  S   L ++ V V NF+FT +A  L+DR GRR +LL     M+    +C +  G
Sbjct  280  IFENLGLSDSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMA----ICFVILG  335

Query  121  SMELPGFSSEPRSQTQADNGATDKSFLPIAVLLCLTVYTASYAFGLGNVPWQQ-SELFPL  179
             + L G S                  + I  +    ++ A +A G G VPW   SELFPL
Sbjct  336  IVALLGVSKSD-----------WAGIVAIVFIA---LFIAFFAMGWGPVPWVIVSELFPL  381

Query  180  NVRSLGSALATATNWASNFIVGLTFLPMMDWLSPGWTFTAYAGVCVVGWFGVWAIYPEMS  239
            +VRS   ALATA NW +NF++G  F  + D +  G+TF  +AG+ V+    V+   PE  
Sbjct  382  SVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETK  441

Query  240  GLSLEEV  246
            G +LEE+
Sbjct  442  GRTLEEI  448



Lambda      K        H        a         alpha
   0.325    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00029967

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         315     7e-103
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            69.0    4e-13 


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 315 bits (809),  Expect = 7e-103, Method: Composition-based stats.
 Identities = 172/489 (35%), Positives = 254/489 (52%), Gaps = 55/489 (11%)

Query  52   LTFSAGISGLLFGYDTGVISSTLVSIG--------TDLSNRVLTTLDKSLITSCTSLFAL  103
            +   A + G LFGYDTGVI + L  I           +S+    ++   LI S  S+   
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  104  LASPLAGILADKLGRRRVILVADVLFTLGALVQA---VTGQVWGMVLGRSVVGLAVGAAS  160
            + S  AG L D+ GR++ +L+A+VLF +GA++Q        V+ +++GR +VG+ VG AS
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  161  LVTPLYISELAPSHARGRLVTILCLFITGGQVVAYIVGWLFSTI--TSGWRWIVGLGTLP  218
            ++ P+YISE+AP   RG L ++  L IT G ++AYI G   +    + GWR  +GL  +P
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVP  180

Query  219  AVLQFVIVVALPETPRWLVQAGLEAEALHVLSKVYQGQSDNHQIAKQVVRSIQLEVAEEQ  278
            A+L  + ++ LPE+PRWLV+ G   EA  VL+K+               R +     E  
Sbjct  181  ALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKL---------------RGVPDVDRELD  225

Query  279  EEMDRIKPSVDATRIPWLRKVAQRAQDLFLVGGNRRALIIATMLQGLQQLCGFNSLMYFS  338
            E  D ++   +A +  W          LF     R+ L+I  MLQ  QQL G N++ Y+S
Sbjct  226  EIKDSLEAGQEAEKASWKE--------LFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYS  277

Query  339  ATIFSMLAFSSPTLTSLSVAVTNFIFTLLAFALIDRIGRRRILLYSIPVMSASLIVCALA  398
             TIF  L  S   L ++ V V NF+FT +A  L+DR GRR +LL     M+    +C + 
Sbjct  278  TTIFENLGLSDSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMA----ICFVI  333

Query  399  FGSMELPGFSSEPRSQTQADNGATDKSFLPIAVLLCLTVYTASYAFGLGNVPWQQ-SELF  457
             G + L G S                  + I  +    ++ A +A G G VPW   SELF
Sbjct  334  LGIVALLGVSKSD-----------WAGIVAIVFIA---LFIAFFAMGWGPVPWVIVSELF  379

Query  458  PLNVRSLGSALATATNWASNFIVGLTFLPMMDWLSPGWTFTAYAGVCVVGWFGVWAIYPE  517
            PL+VRS   ALATA NW +NF++G  F  + D +  G+TF  +AG+ V+    V+   PE
Sbjct  380  PLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPE  439

Query  518  MSGLSLEEV  526
              G +LEE+
Sbjct  440  TKGRTLEEI  448


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 69.0 bits (169),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 46/178 (26%), Positives = 85/178 (48%), Gaps = 5/178 (3%)

Query  58   ISGLLFGYDTGVISSTLVS-IGTDLSNRVLTTLDKSLITSCTSLFALLASPLAGILADKL  116
            ++  L      ++   L   +  DL    ++  +  L+ +  SL   LA PLAG L+D+ 
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLG---ISPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  117  GRRRVILVADVLFTLGALVQAVTGQVWGMVLGRSVVGLAVGAASLVTPLYISELAPSHAR  176
            GRRRV+L+  +LF LG L+      +W +++ R + GL  GA        I++  P   R
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  177  GRLVTILCLFITGGQVVAYIVGWLFSTITSGWRWIVGLGTLPAVLQFVIVVALPETPR  234
            GR + ++      G  +  ++G L +++  GWR    +  + ++L  V+++     P 
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASL-FGWRAAFLILAILSLLAAVLLLLPRPPPE  176



Lambda      K        H        a         alpha
   0.323    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00034718

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         160     7e-47


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 160 bits (407),  Expect = 7e-47, Method: Composition-based stats.
 Identities = 87/247 (35%), Positives = 124/247 (50%), Gaps = 27/247 (11%)

Query  1    MDRIKPSVDATRIPWLRKVAQRAQDLFLVGGNRRALIIATMLQGLQQLCGFNSLMYFSAT  60
             D ++   +A +  W          LF     R+ L+I  MLQ  QQL G N++ Y+S T
Sbjct  228  KDSLEAGQEAEKASWKE--------LFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTT  279

Query  61   IFSMLAFSSPTLTSLSVAVTNFIFTLLAFALIDRIGRRRILLYSIPVMSASLIVCALAFG  120
            IF  L  S   L ++ V V NF+FT +A  L+DR GRR +LL     M+    +C +  G
Sbjct  280  IFENLGLSDSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMA----ICFVILG  335

Query  121  SMELPGFSSEPRSQTQADNGATDKSFLPIAVLLCLTVYTASYAFGLGNVPWQQ-SELFPL  179
             + L G S                  + I  +    ++ A +A G G VPW   SELFPL
Sbjct  336  IVALLGVSKSD-----------WAGIVAIVFIA---LFIAFFAMGWGPVPWVIVSELFPL  381

Query  180  NVRSLGSALATATNWASNFIVGLTFLPMMDWLSPGWTFTAYAGVCVVGWFGVWAIYPEMS  239
            +VRS   ALATA NW +NF++G  F  + D +  G+TF  +AG+ V+    V+   PE  
Sbjct  382  SVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETK  441

Query  240  GLSLEEV  246
            G +LEE+
Sbjct  442  GRTLEEI  448



Lambda      K        H        a         alpha
   0.325    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00029968

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         160     7e-47


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 160 bits (407),  Expect = 7e-47, Method: Composition-based stats.
 Identities = 87/247 (35%), Positives = 124/247 (50%), Gaps = 27/247 (11%)

Query  1    MDRIKPSVDATRIPWLRKVAQRAQDLFLVGGNRRALIIATMLQGLQQLCGFNSLMYFSAT  60
             D ++   +A +  W          LF     R+ L+I  MLQ  QQL G N++ Y+S T
Sbjct  228  KDSLEAGQEAEKASWKE--------LFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYSTT  279

Query  61   IFSMLAFSSPTLTSLSVAVTNFIFTLLAFALIDRIGRRRILLYSIPVMSASLIVCALAFG  120
            IF  L  S   L ++ V V NF+FT +A  L+DR GRR +LL     M+    +C +  G
Sbjct  280  IFENLGLSDSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMA----ICFVILG  335

Query  121  SMELPGFSSEPRSQTQADNGATDKSFLPIAVLLCLTVYTASYAFGLGNVPWQQ-SELFPL  179
             + L G S                  + I  +    ++ A +A G G VPW   SELFPL
Sbjct  336  IVALLGVSKSD-----------WAGIVAIVFIA---LFIAFFAMGWGPVPWVIVSELFPL  381

Query  180  NVRSLGSALATATNWASNFIVGLTFLPMMDWLSPGWTFTAYAGVCVVGWFGVWAIYPEMS  239
            +VRS   ALATA NW +NF++G  F  + D +  G+TF  +AG+ V+    V+   PE  
Sbjct  382  SVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETK  441

Query  240  GLSLEEV  246
            G +LEE+
Sbjct  442  GRTLEEI  448



Lambda      K        H        a         alpha
   0.325    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00029969

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         292     8e-95
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            66.7    1e-12


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 292 bits (749),  Expect = 8e-95, Method: Composition-based stats.
 Identities = 158/445 (36%), Positives = 235/445 (53%), Gaps = 47/445 (11%)

Query  22   TLDKSLITSCTSLFALLASPLAGILADKLGRRRVILVADVLFTLGALVQA---VTGQVWG  78
            ++   LI S  S+   + S  AG L D+ GR++ +L+A+VLF +GA++Q        V+ 
Sbjct  45   SVLSGLIVSIFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQ  104

Query  79   MVLGRSVVGLAVGAASLVTPLYISELAPSHARGRLVTILCLFITGGQVVAYIVGWLFSTI  138
            +++GR +VG+ VG AS++ P+YISE+AP   RG L ++  L IT G ++AYI G   +  
Sbjct  105  LIVGRVLVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKT  164

Query  139  --TSGWRWIVGLGTLPAVLQFVIVVALPETPRWLVQAGLEAEALHVLSKVYQGQSDNHQI  196
              + GWR  +GL  +PA+L  + ++ LPE+PRWLV+ G   EA  VL+K+          
Sbjct  165  SNSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKL----------  214

Query  197  AKQVVRSIQLEVAEEQEEMDRIKPSVDATRIPWLRKVAQRAQDLFLVGGNRRALIIATML  256
                 R +     E  E  D ++   +A +  W          LF     R+ L+I  ML
Sbjct  215  -----RGVPDVDRELDEIKDSLEAGQEAEKASWKE--------LFSTKTRRQRLLIGVML  261

Query  257  QGLQQLCGFNSLMYFSATIFSMLAFSSPTLTSLSVAVTNFIFTLLAFALIDRIGRRRILL  316
            Q  QQL G N++ Y+S TIF  L  S   L ++ V V NF+FT +A  L+DR GRR +LL
Sbjct  262  QIFQQLTGINAIFYYSTTIFENLGLSDSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLL  321

Query  317  YSIPVMSASLIVCALAFGSMELPGFSSEPRSQTQADNGATDKSFLPIAVLLCLTVYTASY  376
                 M+    +C +  G + L G S                  + I  +    ++ A +
Sbjct  322  LGAAGMA----ICFVILGIVALLGVSKSD-----------WAGIVAIVFIA---LFIAFF  363

Query  377  AFGLGNVPWQQ-SELFPLNVRSLGSALATATNWASNFIVGLTFLPMMDWLSPGWTFTAYA  435
            A G G VPW   SELFPL+VRS   ALATA NW +NF++G  F  + D +  G+TF  +A
Sbjct  364  AMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFA  423

Query  436  GVCVVGWFGVWAIYPEMSGLSLEEV  460
            G+ V+    V+   PE  G +LEE+
Sbjct  424  GLLVLFIIFVFFFVPETKGRTLEEI  448


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 66.7 bits (163),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 1/143 (1%)

Query  26   SLITSCTSLFALLASPLAGILADKLGRRRVILVADVLFTLGALVQAVTGQVWGMVLGRSV  85
             L+ +  SL   LA PLAG L+D+ GRRRV+L+  +LF LG L+      +W +++ R +
Sbjct  35   GLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL  94

Query  86   VGLAVGAASLVTPLYISELAPSHARGRLVTILCLFITGGQVVAYIVGWLFSTITSGWRWI  145
             GL  GA        I++  P   RGR + ++      G  +  ++G L +++  GWR  
Sbjct  95   QGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASL-FGWRAA  153

Query  146  VGLGTLPAVLQFVIVVALPETPR  168
              +  + ++L  V+++     P 
Sbjct  154  FLILAILSLLAAVLLLLPRPPPE  176



Lambda      K        H        a         alpha
   0.324    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00034719

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         298     1e-96
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            68.6    4e-13


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 298 bits (766),  Expect = 1e-96, Method: Composition-based stats.
 Identities = 166/489 (34%), Positives = 243/489 (50%), Gaps = 77/489 (16%)

Query  52   LTFSAGISGLLFGYDT------------------------------DKSLITSCTSLFAL  81
            +   A + G LFGYDT                                 LI S  S+   
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  82   LASPLAGILADKLGRRRVILVADVLFTLGALVQA---VTGQVWGMVLGRSVVGLAVGAAS  138
            + S  AG L D+ GR++ +L+A+VLF +GA++Q        V+ +++GR +VG+ VG AS
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  139  LVTPLYISELAPSHARGRLVTILCLFITGGQVVAYIVGWLFSTI--TSGWRWIVGLGTLP  196
            ++ P+YISE+AP   RG L ++  L IT G ++AYI G   +    + GWR  +GL  +P
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVP  180

Query  197  AVLQFVIVVALPETPRWLVQAGLEAEALHVLSKVYQGQSDNHQIAKQVVRSIQLEVAEEQ  256
            A+L  + ++ LPE+PRWLV+ G   EA  VL+K               +R +     E  
Sbjct  181  ALLLIIGLLFLPESPRWLVEKGRLEEAREVLAK---------------LRGVPDVDRELD  225

Query  257  EEMDRIKPSVDATRIPWLRKVAQRAQDLFLVGGNRRALIIATMLQGLQQLCGFNSLMYFS  316
            E  D ++   +A +  W          LF     R+ L+I  MLQ  QQL G N++ Y+S
Sbjct  226  EIKDSLEAGQEAEKASWKE--------LFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYS  277

Query  317  ATIFSMLAFSSPTLTSLSVAVTNFIFTLLAFALIDRIGRRRILLYSIPVMSASLIVCALA  376
             TIF  L  S   L ++ V V NF+FT +A  L+DR GRR +LL     M+    +C + 
Sbjct  278  TTIFENLGLSDSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMA----ICFVI  333

Query  377  FGSMELPGFSSEPRSQTQADNGATDKSFLPIAVLLCLTVYTASYAFGLGNVPWQQ-SELF  435
             G + L G S                  + I  +    ++ A +A G G VPW   SELF
Sbjct  334  LGIVALLGVSKSD-----------WAGIVAIVFIA---LFIAFFAMGWGPVPWVIVSELF  379

Query  436  PLNVRSLGSALATATNWASNFIVGLTFLPMMDWLSPGWTFTAYAGVCVVGWFGVWAIYPE  495
            PL+VRS   ALATA NW +NF++G  F  + D +  G+TF  +AG+ V+    V+   PE
Sbjct  380  PLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPE  439

Query  496  MSGLSLEEV  504
              G +LEE+
Sbjct  440  TKGRTLEEI  448


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 68.6 bits (168),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 48/168 (29%), Positives = 79/168 (47%), Gaps = 7/168 (4%)

Query  45   GSLFIWALTFSAGISGLLFGYDTDKSLITSCTSLFALLASPLAGILADKLGRRRVILVAD  104
            G      L    GIS    G      L+ +  SL   LA PLAG L+D+ GRRRV+L+  
Sbjct  16   GPALPLLLAEDLGISPTEIG------LLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGL  69

Query  105  VLFTLGALVQAVTGQVWGMVLGRSVVGLAVGAASLVTPLYISELAPSHARGRLVTILCLF  164
            +LF LG L+      +W +++ R + GL  GA        I++  P   RGR + ++   
Sbjct  70   LLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAG  129

Query  165  ITGGQVVAYIVGWLFSTITSGWRWIVGLGTLPAVLQFVIVVALPETPR  212
               G  +  ++G L +++  GWR    +  + ++L  V+++     P 
Sbjct  130  FGLGAALGPLLGGLLASL-FGWRAAFLILAILSLLAAVLLLLPRPPPE  176



Lambda      K        H        a         alpha
   0.323    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00034720

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         262     5e-84


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 262 bits (671),  Expect = 5e-84, Method: Composition-based stats.
 Identities = 138/383 (36%), Positives = 199/383 (52%), Gaps = 44/383 (11%)

Query  3    LGRSVVGLAVGAASLVTPLYISELAPSHARGRLVTILCLFITGGQVVAYIVGWLFSTI--  60
            +GR +VG+ VG AS++ P+YISE+AP   RG L ++  L IT G ++AYI G   +    
Sbjct  107  VGRVLVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSN  166

Query  61   TSGWRWIVGLGTLPAVLQFVIVVALPETPRWLVQAGLEAEALHVLSKVYQGQSDNHQIAK  120
            + GWR  +GL  +PA+L  + ++ LPE+PRWLV+ G   EA  VL+K+            
Sbjct  167  SDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKL------------  214

Query  121  QVVRSIQLEVAEEQEEMDRIKPSVDATRIPWLRKVAQRAQDLFLVGGNRRALIIATMLQG  180
               R +     E  E  D ++   +A +  W          LF     R+ L+I  MLQ 
Sbjct  215  ---RGVPDVDRELDEIKDSLEAGQEAEKASWKE--------LFSTKTRRQRLLIGVMLQI  263

Query  181  LQQLCGFNSLMYFSATIFSMLAFSSPTLTSLSVAVTNFIFTLLAFALIDRIGRRRILLYS  240
             QQL G N++ Y+S TIF  L  S   L ++ V V NF+FT +A  L+DR GRR +LL  
Sbjct  264  FQQLTGINAIFYYSTTIFENLGLSDSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLG  323

Query  241  IPVMSASLIVCALAFGSMELPGFSSEPRSQTQADNGATDKSFLPIAVLLCLTVYTASYAF  300
               M+    +C +  G + L G S                  + I  +    ++ A +A 
Sbjct  324  AAGMA----ICFVILGIVALLGVSKSD-----------WAGIVAIVFIA---LFIAFFAM  365

Query  301  GLGNVPWQQ-SELFPLNVRSLGSALATATNWASNFIVGLTFLPMMDWLSPGWTFTAYAGV  359
            G G VPW   SELFPL+VRS   ALATA NW +NF++G  F  + D +  G+TF  +AG+
Sbjct  366  GWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGL  425

Query  360  CVVGWFGVWAIYPEMSGLSLEEV  382
             V+    V+   PE  G +LEE+
Sbjct  426  LVLFIIFVFFFVPETKGRTLEEI  448



Lambda      K        H        a         alpha
   0.324    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0847    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00034721

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         315     7e-103
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            69.0    4e-13 


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 315 bits (809),  Expect = 7e-103, Method: Composition-based stats.
 Identities = 172/489 (35%), Positives = 254/489 (52%), Gaps = 55/489 (11%)

Query  52   LTFSAGISGLLFGYDTGVISSTLVSIG--------TDLSNRVLTTLDKSLITSCTSLFAL  103
            +   A + G LFGYDTGVI + L  I           +S+    ++   LI S  S+   
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  104  LASPLAGILADKLGRRRVILVADVLFTLGALVQA---VTGQVWGMVLGRSVVGLAVGAAS  160
            + S  AG L D+ GR++ +L+A+VLF +GA++Q        V+ +++GR +VG+ VG AS
Sbjct  61   IGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGAS  120

Query  161  LVTPLYISELAPSHARGRLVTILCLFITGGQVVAYIVGWLFSTI--TSGWRWIVGLGTLP  218
            ++ P+YISE+AP   RG L ++  L IT G ++AYI G   +    + GWR  +GL  +P
Sbjct  121  VLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDGWRIPLGLQLVP  180

Query  219  AVLQFVIVVALPETPRWLVQAGLEAEALHVLSKVYQGQSDNHQIAKQVVRSIQLEVAEEQ  278
            A+L  + ++ LPE+PRWLV+ G   EA  VL+K+               R +     E  
Sbjct  181  ALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKL---------------RGVPDVDRELD  225

Query  279  EEMDRIKPSVDATRIPWLRKVAQRAQDLFLVGGNRRALIIATMLQGLQQLCGFNSLMYFS  338
            E  D ++   +A +  W          LF     R+ L+I  MLQ  QQL G N++ Y+S
Sbjct  226  EIKDSLEAGQEAEKASWKE--------LFSTKTRRQRLLIGVMLQIFQQLTGINAIFYYS  277

Query  339  ATIFSMLAFSSPTLTSLSVAVTNFIFTLLAFALIDRIGRRRILLYSIPVMSASLIVCALA  398
             TIF  L  S   L ++ V V NF+FT +A  L+DR GRR +LL     M+    +C + 
Sbjct  278  TTIFENLGLSDSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMA----ICFVI  333

Query  399  FGSMELPGFSSEPRSQTQADNGATDKSFLPIAVLLCLTVYTASYAFGLGNVPWQQ-SELF  457
             G + L G S                  + I  +    ++ A +A G G VPW   SELF
Sbjct  334  LGIVALLGVSKSD-----------WAGIVAIVFIA---LFIAFFAMGWGPVPWVIVSELF  379

Query  458  PLNVRSLGSALATATNWASNFIVGLTFLPMMDWLSPGWTFTAYAGVCVVGWFGVWAIYPE  517
            PL+VRS   ALATA NW +NF++G  F  + D +  G+TF  +AG+ V+    V+   PE
Sbjct  380  PLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPE  439

Query  518  MSGLSLEEV  526
              G +LEE+
Sbjct  440  TKGRTLEEI  448


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 69.0 bits (169),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 46/178 (26%), Positives = 85/178 (48%), Gaps = 5/178 (3%)

Query  58   ISGLLFGYDTGVISSTLVS-IGTDLSNRVLTTLDKSLITSCTSLFALLASPLAGILADKL  116
            ++  L      ++   L   +  DL    ++  +  L+ +  SL   LA PLAG L+D+ 
Sbjct  3    LAAFLAALGRSLLGPALPLLLAEDLG---ISPTEIGLLLTLFSLGYALAQPLAGRLSDRF  59

Query  117  GRRRVILVADVLFTLGALVQAVTGQVWGMVLGRSVVGLAVGAASLVTPLYISELAPSHAR  176
            GRRRV+L+  +LF LG L+      +W +++ R + GL  GA        I++  P   R
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  177  GRLVTILCLFITGGQVVAYIVGWLFSTITSGWRWIVGLGTLPAVLQFVIVVALPETPR  234
            GR + ++      G  +  ++G L +++  GWR    +  + ++L  V+++     P 
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASL-FGWRAAFLILAILSLLAAVLLLLPRPPPE  176



Lambda      K        H        a         alpha
   0.323    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00029970

Length=435


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 529127880


Query= TCONS_00034722

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00034723

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00029972

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00029971

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00029975

Length=312


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00029973

Length=363


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00029976

Length=399


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 481536020


Query= TCONS_00034724

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00029974

Length=312


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00029978

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00029977

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00029979

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00029980

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00034725

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00034727

Length=312


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00034726

Length=312


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00034728

Length=363


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00029981

Length=405


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00029982

Length=250


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00029984

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460976 pfam03571, Peptidase_M49, Peptidase family M49             333     5e-114


>CDD:460976 pfam03571, Peptidase_M49, Peptidase family M49.  
Length=550

 Score = 333 bits (856),  Expect = 5e-114, Method: Composition-based stats.
 Identities = 116/192 (60%), Positives = 146/192 (76%), Gaps = 8/192 (4%)

Query  1    MVLSCDFEILKIFGFGDGQVDLNNEAGDVLFVAYLQMARAGLVALEFWDPKTQKWGQAHM  60
            + LS + E+L+IFGF D       EA DV++V +LQMARAGL+ALEF+DP+T+KWGQAHM
Sbjct  365  LYLSLNKEVLEIFGFTD-----KEEADDVIYVNWLQMARAGLLALEFYDPETKKWGQAHM  419

Query  61   QARYSILRTFLDAGD-DFVRLVYTKEDLSDLEIHLDRSKILTHGRPAVERYLQQLHIYKS  119
            QAR++IL+  L+AGD  FV+L  TK++ SDL I LDRSKILT G+PA+  +L +L +YKS
Sbjct  420  QARFAILKVLLEAGDAGFVKLEETKDEDSDLTIRLDRSKILTVGKPAIGDFLLKLQVYKS  479

Query  120  TADIDAGKKLYSDITFVDEWWGTKVRDIVLKNKIPRKIFVQGNTILN-GDEVTLKEYEPT  178
            TAD++AG + Y D T VDE +  K RDIVL  K PRK+FVQ NT+LN G +V LKEYE T
Sbjct  480  TADVEAGTEFYEDYTTVDEEFL-KWRDIVLAKKQPRKVFVQANTVLNDGGKVELKEYEET  538

Query  179  LEGMIQSFVERN  190
             EGMIQSFVER 
Sbjct  539  PEGMIQSFVERF  550



Lambda      K        H        a         alpha
   0.322    0.140    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00034729

Length=316


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00029985

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460976 pfam03571, Peptidase_M49, Peptidase family M49             700     0.0  


>CDD:460976 pfam03571, Peptidase_M49, Peptidase family M49.  
Length=550

 Score = 700 bits (1809),  Expect = 0.0, Method: Composition-based stats.
 Identities = 243/354 (69%), Positives = 290/354 (82%), Gaps = 9/354 (3%)

Query  1    MIPKLPWSKDFEKDKFLSPDFTSLEVLSFQSSGVPAGINLPNYDDIRQNLGFKNVSLGNV  60
             IP LPW KDFEKDKFL PDFTSLEVL+F  SG+PAGIN+PNYDDIRQN GFKNVSLGNV
Sbjct  204  FIPLLPWPKDFEKDKFLKPDFTSLEVLTFAGSGIPAGINIPNYDDIRQNEGFKNVSLGNV  263

Query  61   LSAKAPNEPVPFIPEKDLEVYRRYRDPAFEVQVGIHELLGHGTGKLLQETAPGKYNFDVS  120
            LSAKAPNE + FI E+D E+Y++YRDPAFEVQVG+HELLGHG+GKLLQETA GK+NFD  
Sbjct  264  LSAKAPNEKITFISEEDQELYKKYRDPAFEVQVGLHELLGHGSGKLLQETADGKFNFDKE  323

Query  121  NPPVSPITNKPVTTWYKPGQTWSSVFGAIASSYEECRAECVAMVLSCDFEILKIFGFGDG  180
            NPP  P+T KP+T+WYKPG+TW SVFG++ASSYEECRAECVA+ LS + E+L+IFGF D 
Sbjct  324  NPPN-PLTGKPITSWYKPGETWGSVFGSLASSYEECRAECVALYLSLNKEVLEIFGFTD-  381

Query  181  QVDLNNEAGDVLFVAYLQMARAGLVALEFWDPKTQKWGQAHMQARYSILRTFLDAGD-DF  239
                  EA DV++V +LQMARAGL+ALEF+DP+T+KWGQAHMQAR++IL+  L+AGD  F
Sbjct  382  ----KEEADDVIYVNWLQMARAGLLALEFYDPETKKWGQAHMQARFAILKVLLEAGDAGF  437

Query  240  VRLVYTKEDLSDLEIHLDRSKILTHGRPAVERYLQQLHIYKSTADIDAGKKLYSDITFVD  299
            V+L  TK++ SDL I LDRSKILT G+PA+  +L +L +YKSTAD++AG + Y D T VD
Sbjct  438  VKLEETKDEDSDLTIRLDRSKILTVGKPAIGDFLLKLQVYKSTADVEAGTEFYEDYTTVD  497

Query  300  EWWGTKVRDIVLKNKIPRKIFVQGNTILN-GDEVTLKEYEPTLEGMIQSFVERN  352
            E +  K RDIVL  K PRK+FVQ NT+LN G +V LKEYE T EGMIQSFVER 
Sbjct  498  EEFL-KWRDIVLAKKQPRKVFVQANTVLNDGGKVELKEYEETPEGMIQSFVERF  550



Lambda      K        H        a         alpha
   0.319    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00029988

Length=316


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00029986

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV. Th...  87.8    6e-22


>CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV.  The D-amino 
acid transferases (D-AAT) are required by bacteria to catalyze 
the synthesis of D-glutamic acid and D-alanine, which 
are essential constituents of bacterial cell wall and are the 
building block for other D-amino acids. Despite the difference 
in the structure of the substrates, D-AATs and L-ATTs 
have strong similarity.
Length=221

 Score = 87.8 bits (218),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 69/171 (40%), Gaps = 23/171 (13%)

Query  11   GPPGSALLFVIASPVGPYYPTGFKAISLEATDYAVRAWPGGVGDKKLGANYAPCIVPQLK  70
                +  +FV A P  P                 VR  P          NY   ++ + +
Sbjct  74   TSDPTLAIFVSALPPPPES------KKKGVISSLVRRNPPSPLPGAKTLNYLENVLARRE  127

Query  71   AASRGFQQNLWLFGDEEYVTEVGTMNLFIALKNKETGQKELVTAPLDGTILEGVTRDSVL  130
            A ++G    L L  ++  VTE  T N+F+           L T PL+  IL G+TR ++L
Sbjct  128  AKAQGADDAL-LLDEDGNVTEGSTSNVFLVKGGT------LYTPPLESGILPGITRQALL  180

Query  131  ALARERLVPKGWTVSERKIRMSEVAEASEEGRLIEVFGAGTAAIVSPVRTI  181
             LA+      G  V ER I ++++ EA       E F   +   V+PV +I
Sbjct  181  DLAKAL----GLEVEERPITLADLQEAD------EAFLTNSLRGVTPVSSI  221



Lambda      K        H        a         alpha
   0.316    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00029987

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV. Th...  116     4e-31


>CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV.  The D-amino 
acid transferases (D-AAT) are required by bacteria to catalyze 
the synthesis of D-glutamic acid and D-alanine, which 
are essential constituents of bacterial cell wall and are the 
building block for other D-amino acids. Despite the difference 
in the structure of the substrates, D-AATs and L-ATTs 
have strong similarity.
Length=221

 Score = 116 bits (293),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 66/255 (26%), Positives = 109/255 (43%), Gaps = 37/255 (15%)

Query  118  CFEGMKAYKDKKGQIRLFRPDKNMARLNKSSERIALP-TFDGDALIKLIGEFVRLDSRFI  176
             FE ++ Y       ++F  D+++ARL +S++ + +P  FD + L K+I E ++ +   +
Sbjct  2    VFETLRVY-----NGKIFFLDEHLARLRRSAKLLGIPLPFDEEDLRKIIEELLKANGLGV  56

Query  177  PDARGYSLYLRPTMIGTQNTLGVGPPGSAL-LFVIASPVGPYYPTGFKAISLEATDYAVR  235
                     LR T+       G+      L +FV A P  P                 VR
Sbjct  57   G-------RLRLTVSRGPGGFGLPTSDPTLAIFVSALPPPPES------KKKGVISSLVR  103

Query  236  AWPGGVGDKKLGANYAPCIVPQLKAASRGFQQNLWLFGDEEYVTEVGTMNLFIALKNKET  295
              P          NY   ++ + +A ++G    L L  ++  VTE  T N+F+       
Sbjct  104  RNPPSPLPGAKTLNYLENVLARREAKAQGADDAL-LLDEDGNVTEGSTSNVFLVKGGT--  160

Query  296  GQKELVTAPLDGTILEGVTRDSVLALARERLVPKGWTVSERKIRMSEVAEASEEGRLIEV  355
                L T PL+  IL G+TR ++L LA+      G  V ER I ++++ EA       E 
Sbjct  161  ----LYTPPLESGILPGITRQALLDLAKAL----GLEVEERPITLADLQEAD------EA  206

Query  356  FGAGTAAIVSPVRTI  370
            F   +   V+PV +I
Sbjct  207  FLTNSLRGVTPVSSI  221



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500176124


Query= TCONS_00029989

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV. Th...  87.8    6e-22


>CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV.  The D-amino 
acid transferases (D-AAT) are required by bacteria to catalyze 
the synthesis of D-glutamic acid and D-alanine, which 
are essential constituents of bacterial cell wall and are the 
building block for other D-amino acids. Despite the difference 
in the structure of the substrates, D-AATs and L-ATTs 
have strong similarity.
Length=221

 Score = 87.8 bits (218),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 69/171 (40%), Gaps = 23/171 (13%)

Query  11   GPPGSALLFVIASPVGPYYPTGFKAISLEATDYAVRAWPGGVGDKKLGANYAPCIVPQLK  70
                +  +FV A P  P                 VR  P          NY   ++ + +
Sbjct  74   TSDPTLAIFVSALPPPPES------KKKGVISSLVRRNPPSPLPGAKTLNYLENVLARRE  127

Query  71   AASRGFQQNLWLFGDEEYVTEVGTMNLFIALKNKETGQKELVTAPLDGTILEGVTRDSVL  130
            A ++G    L L  ++  VTE  T N+F+           L T PL+  IL G+TR ++L
Sbjct  128  AKAQGADDAL-LLDEDGNVTEGSTSNVFLVKGGT------LYTPPLESGILPGITRQALL  180

Query  131  ALARERLVPKGWTVSERKIRMSEVAEASEEGRLIEVFGAGTAAIVSPVRTI  181
             LA+      G  V ER I ++++ EA       E F   +   V+PV +I
Sbjct  181  DLAKAL----GLEVEERPITLADLQEAD------EAFLTNSLRGVTPVSSI  221



Lambda      K        H        a         alpha
   0.316    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00029990

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV. Th...  116     4e-31


>CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV.  The D-amino 
acid transferases (D-AAT) are required by bacteria to catalyze 
the synthesis of D-glutamic acid and D-alanine, which 
are essential constituents of bacterial cell wall and are the 
building block for other D-amino acids. Despite the difference 
in the structure of the substrates, D-AATs and L-ATTs 
have strong similarity.
Length=221

 Score = 116 bits (293),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 66/255 (26%), Positives = 109/255 (43%), Gaps = 37/255 (15%)

Query  118  CFEGMKAYKDKKGQIRLFRPDKNMARLNKSSERIALP-TFDGDALIKLIGEFVRLDSRFI  176
             FE ++ Y       ++F  D+++ARL +S++ + +P  FD + L K+I E ++ +   +
Sbjct  2    VFETLRVY-----NGKIFFLDEHLARLRRSAKLLGIPLPFDEEDLRKIIEELLKANGLGV  56

Query  177  PDARGYSLYLRPTMIGTQNTLGVGPPGSAL-LFVIASPVGPYYPTGFKAISLEATDYAVR  235
                     LR T+       G+      L +FV A P  P                 VR
Sbjct  57   G-------RLRLTVSRGPGGFGLPTSDPTLAIFVSALPPPPES------KKKGVISSLVR  103

Query  236  AWPGGVGDKKLGANYAPCIVPQLKAASRGFQQNLWLFGDEEYVTEVGTMNLFIALKNKET  295
              P          NY   ++ + +A ++G    L L  ++  VTE  T N+F+       
Sbjct  104  RNPPSPLPGAKTLNYLENVLARREAKAQGADDAL-LLDEDGNVTEGSTSNVFLVKGGT--  160

Query  296  GQKELVTAPLDGTILEGVTRDSVLALARERLVPKGWTVSERKIRMSEVAEASEEGRLIEV  355
                L T PL+  IL G+TR ++L LA+      G  V ER I ++++ EA       E 
Sbjct  161  ----LYTPPLESGILPGITRQALLDLAKAL----GLEVEERPITLADLQEAD------EA  206

Query  356  FGAGTAAIVSPVRTI  370
            F   +   V+PV +I
Sbjct  207  FLTNSLRGVTPVSSI  221



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500176124


Query= TCONS_00029992

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV. Th...  87.8    6e-22


>CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV.  The D-amino 
acid transferases (D-AAT) are required by bacteria to catalyze 
the synthesis of D-glutamic acid and D-alanine, which 
are essential constituents of bacterial cell wall and are the 
building block for other D-amino acids. Despite the difference 
in the structure of the substrates, D-AATs and L-ATTs 
have strong similarity.
Length=221

 Score = 87.8 bits (218),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 69/171 (40%), Gaps = 23/171 (13%)

Query  11   GPPGSALLFVIASPVGPYYPTGFKAISLEATDYAVRAWPGGVGDKKLGANYAPCIVPQLK  70
                +  +FV A P  P                 VR  P          NY   ++ + +
Sbjct  74   TSDPTLAIFVSALPPPPES------KKKGVISSLVRRNPPSPLPGAKTLNYLENVLARRE  127

Query  71   AASRGFQQNLWLFGDEEYVTEVGTMNLFIALKNKETGQKELVTAPLDGTILEGVTRDSVL  130
            A ++G    L L  ++  VTE  T N+F+           L T PL+  IL G+TR ++L
Sbjct  128  AKAQGADDAL-LLDEDGNVTEGSTSNVFLVKGGT------LYTPPLESGILPGITRQALL  180

Query  131  ALARERLVPKGWTVSERKIRMSEVAEASEEGRLIEVFGAGTAAIVSPVRTI  181
             LA+      G  V ER I ++++ EA       E F   +   V+PV +I
Sbjct  181  DLAKAL----GLEVEERPITLADLQEAD------EAFLTNSLRGVTPVSSI  221



Lambda      K        H        a         alpha
   0.316    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00029993

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV. Th...  87.8    6e-22


>CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV.  The D-amino 
acid transferases (D-AAT) are required by bacteria to catalyze 
the synthesis of D-glutamic acid and D-alanine, which 
are essential constituents of bacterial cell wall and are the 
building block for other D-amino acids. Despite the difference 
in the structure of the substrates, D-AATs and L-ATTs 
have strong similarity.
Length=221

 Score = 87.8 bits (218),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 69/171 (40%), Gaps = 23/171 (13%)

Query  11   GPPGSALLFVIASPVGPYYPTGFKAISLEATDYAVRAWPGGVGDKKLGANYAPCIVPQLK  70
                +  +FV A P  P                 VR  P          NY   ++ + +
Sbjct  74   TSDPTLAIFVSALPPPPES------KKKGVISSLVRRNPPSPLPGAKTLNYLENVLARRE  127

Query  71   AASRGFQQNLWLFGDEEYVTEVGTMNLFIALKNKETGQKELVTAPLDGTILEGVTRDSVL  130
            A ++G    L L  ++  VTE  T N+F+           L T PL+  IL G+TR ++L
Sbjct  128  AKAQGADDAL-LLDEDGNVTEGSTSNVFLVKGGT------LYTPPLESGILPGITRQALL  180

Query  131  ALARERLVPKGWTVSERKIRMSEVAEASEEGRLIEVFGAGTAAIVSPVRTI  181
             LA+      G  V ER I ++++ EA       E F   +   V+PV +I
Sbjct  181  DLAKAL----GLEVEERPITLADLQEAD------EAFLTNSLRGVTPVSSI  221



Lambda      K        H        a         alpha
   0.316    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00029991

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV. Th...  117     3e-31


>CDD:395844 pfam01063, Aminotran_4, Amino-transferase class IV.  The D-amino 
acid transferases (D-AAT) are required by bacteria to catalyze 
the synthesis of D-glutamic acid and D-alanine, which 
are essential constituents of bacterial cell wall and are the 
building block for other D-amino acids. Despite the difference 
in the structure of the substrates, D-AATs and L-ATTs 
have strong similarity.
Length=221

 Score = 117 bits (294),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 66/255 (26%), Positives = 109/255 (43%), Gaps = 37/255 (15%)

Query  118  CFEGMKAYKDKKGQIRLFRPDKNMARLNKSSERIALP-TFDGDALIKLIGEFVRLDSRFI  176
             FE ++ Y       ++F  D+++ARL +S++ + +P  FD + L K+I E ++ +   +
Sbjct  2    VFETLRVY-----NGKIFFLDEHLARLRRSAKLLGIPLPFDEEDLRKIIEELLKANGLGV  56

Query  177  PDARGYSLYLRPTMIGTQNTLGVGPPGSAL-LFVIASPVGPYYPTGFKAISLEATDYAVR  235
                     LR T+       G+      L +FV A P  P                 VR
Sbjct  57   G-------RLRLTVSRGPGGFGLPTSDPTLAIFVSALPPPPES------KKKGVISSLVR  103

Query  236  AWPGGVGDKKLGANYAPCIVPQLKAASRGFQQNLWLFGDEEYVTEVGTMNLFIALKNKET  295
              P          NY   ++ + +A ++G    L L  ++  VTE  T N+F+       
Sbjct  104  RNPPSPLPGAKTLNYLENVLARREAKAQGADDAL-LLDEDGNVTEGSTSNVFLVKGGT--  160

Query  296  GQKELVTAPLDGTILEGVTRDSVLALARERLVPKGWTVSERKIRMSEVAEASEEGRLIEV  355
                L T PL+  IL G+TR ++L LA+      G  V ER I ++++ EA       E 
Sbjct  161  ----LYTPPLESGILPGITRQALLDLAKAL----GLEVEERPITLADLQEAD------EA  206

Query  356  FGAGTAAIVSPVRTI  370
            F   +   V+PV +I
Sbjct  207  FLTNSLRGVTPVSSI  221



Lambda      K        H        a         alpha
   0.318    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 504836150


Query= TCONS_00034731

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00034732

Length=309


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00029995

Length=289


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 327287968


Query= TCONS_00029996

Length=289


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 327287968


Query= TCONS_00029997

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460114 pfam01214, CK_II_beta, Casein kinase II regulatory sub...  307     5e-106


>CDD:460114 pfam01214, CK_II_beta, Casein kinase II regulatory subunit.  

Length=182

 Score = 307 bits (788),  Expect = 5e-106, Method: Composition-based stats.
 Identities = 109/201 (54%), Positives = 127/201 (63%), Gaps = 35/201 (17%)

Query  10   SWISSFCSLMGHEFFAEVSEDFIEDDFNLTGLQSQVPMYKEALEMILDVEPEEDEDEEEE  69
            SWIS FCSL G+EFF EV EDFIEDDFNLTGL +QVP YKEALEMILDVE          
Sbjct  1    SWISWFCSLKGNEFFCEVDEDFIEDDFNLTGLSAQVPNYKEALEMILDVED---------  51

Query  70   EEEEEEDDDEILGDERPPGYRRAGDRRHARVASDLSVIESSAELLYGLIHQRYITSRPGI  129
                                             D S +ESSAELLYGLIH RYI +  G+
Sbjct  52   --------------------------EEKLDDEDRSEVESSAELLYGLIHARYILTPRGL  85

Query  130  QQMLEKYEMQHFGVCPRTYCNGSKVLPVGCSDTPGQETVKLFCPSCQDLYTPPNSRFHSV  189
            Q+MLEKYE   FG CPR YCNG  +LPVG SD PG+ TVKL+CP C D+Y P +SR  ++
Sbjct  86   QKMLEKYERGDFGRCPRVYCNGQPLLPVGLSDIPGESTVKLYCPRCNDVYLPKSSRSRNI  145

Query  190  DGAFFGTTFGYLFFMTFPDLD  210
            DGAFFGT+F +LF +T+P+L 
Sbjct  146  DGAFFGTSFPHLFLLTYPELV  166



Lambda      K        H        a         alpha
   0.315    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00034733

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00029999

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460114 pfam01214, CK_II_beta, Casein kinase II regulatory sub...  307     5e-106


>CDD:460114 pfam01214, CK_II_beta, Casein kinase II regulatory subunit.  

Length=182

 Score = 307 bits (788),  Expect = 5e-106, Method: Composition-based stats.
 Identities = 109/201 (54%), Positives = 127/201 (63%), Gaps = 35/201 (17%)

Query  10   SWISSFCSLMGHEFFAEVSEDFIEDDFNLTGLQSQVPMYKEALEMILDVEPEEDEDEEEE  69
            SWIS FCSL G+EFF EV EDFIEDDFNLTGL +QVP YKEALEMILDVE          
Sbjct  1    SWISWFCSLKGNEFFCEVDEDFIEDDFNLTGLSAQVPNYKEALEMILDVED---------  51

Query  70   EEEEEEDDDEILGDERPPGYRRAGDRRHARVASDLSVIESSAELLYGLIHQRYITSRPGI  129
                                             D S +ESSAELLYGLIH RYI +  G+
Sbjct  52   --------------------------EEKLDDEDRSEVESSAELLYGLIHARYILTPRGL  85

Query  130  QQMLEKYEMQHFGVCPRTYCNGSKVLPVGCSDTPGQETVKLFCPSCQDLYTPPNSRFHSV  189
            Q+MLEKYE   FG CPR YCNG  +LPVG SD PG+ TVKL+CP C D+Y P +SR  ++
Sbjct  86   QKMLEKYERGDFGRCPRVYCNGQPLLPVGLSDIPGESTVKLYCPRCNDVYLPKSSRSRNI  145

Query  190  DGAFFGTTFGYLFFMTFPDLD  210
            DGAFFGT+F +LF +T+P+L 
Sbjct  146  DGAFFGTSFPHLFLLTYPELV  166



Lambda      K        H        a         alpha
   0.315    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00029998

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460114 pfam01214, CK_II_beta, Casein kinase II regulatory sub...  307     5e-106


>CDD:460114 pfam01214, CK_II_beta, Casein kinase II regulatory subunit.  

Length=182

 Score = 307 bits (788),  Expect = 5e-106, Method: Composition-based stats.
 Identities = 109/201 (54%), Positives = 127/201 (63%), Gaps = 35/201 (17%)

Query  10   SWISSFCSLMGHEFFAEVSEDFIEDDFNLTGLQSQVPMYKEALEMILDVEPEEDEDEEEE  69
            SWIS FCSL G+EFF EV EDFIEDDFNLTGL +QVP YKEALEMILDVE          
Sbjct  1    SWISWFCSLKGNEFFCEVDEDFIEDDFNLTGLSAQVPNYKEALEMILDVED---------  51

Query  70   EEEEEEDDDEILGDERPPGYRRAGDRRHARVASDLSVIESSAELLYGLIHQRYITSRPGI  129
                                             D S +ESSAELLYGLIH RYI +  G+
Sbjct  52   --------------------------EEKLDDEDRSEVESSAELLYGLIHARYILTPRGL  85

Query  130  QQMLEKYEMQHFGVCPRTYCNGSKVLPVGCSDTPGQETVKLFCPSCQDLYTPPNSRFHSV  189
            Q+MLEKYE   FG CPR YCNG  +LPVG SD PG+ TVKL+CP C D+Y P +SR  ++
Sbjct  86   QKMLEKYERGDFGRCPRVYCNGQPLLPVGLSDIPGESTVKLYCPRCNDVYLPKSSRSRNI  145

Query  190  DGAFFGTTFGYLFFMTFPDLD  210
            DGAFFGT+F +LF +T+P+L 
Sbjct  146  DGAFFGTSFPHLFLLTYPELV  166



Lambda      K        H        a         alpha
   0.315    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0749    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00034734

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460114 pfam01214, CK_II_beta, Casein kinase II regulatory sub...  307     5e-106


>CDD:460114 pfam01214, CK_II_beta, Casein kinase II regulatory subunit.  

Length=182

 Score = 307 bits (788),  Expect = 5e-106, Method: Composition-based stats.
 Identities = 109/201 (54%), Positives = 127/201 (63%), Gaps = 35/201 (17%)

Query  10   SWISSFCSLMGHEFFAEVSEDFIEDDFNLTGLQSQVPMYKEALEMILDVEPEEDEDEEEE  69
            SWIS FCSL G+EFF EV EDFIEDDFNLTGL +QVP YKEALEMILDVE          
Sbjct  1    SWISWFCSLKGNEFFCEVDEDFIEDDFNLTGLSAQVPNYKEALEMILDVED---------  51

Query  70   EEEEEEDDDEILGDERPPGYRRAGDRRHARVASDLSVIESSAELLYGLIHQRYITSRPGI  129
                                             D S +ESSAELLYGLIH RYI +  G+
Sbjct  52   --------------------------EEKLDDEDRSEVESSAELLYGLIHARYILTPRGL  85

Query  130  QQMLEKYEMQHFGVCPRTYCNGSKVLPVGCSDTPGQETVKLFCPSCQDLYTPPNSRFHSV  189
            Q+MLEKYE   FG CPR YCNG  +LPVG SD PG+ TVKL+CP C D+Y P +SR  ++
Sbjct  86   QKMLEKYERGDFGRCPRVYCNGQPLLPVGLSDIPGESTVKLYCPRCNDVYLPKSSRSRNI  145

Query  190  DGAFFGTTFGYLFFMTFPDLD  210
            DGAFFGT+F +LF +T+P+L 
Sbjct  146  DGAFFGTSFPHLFLLTYPELV  166



Lambda      K        H        a         alpha
   0.315    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00034735

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460114 pfam01214, CK_II_beta, Casein kinase II regulatory sub...  305     9e-107


>CDD:460114 pfam01214, CK_II_beta, Casein kinase II regulatory subunit.  

Length=182

 Score = 305 bits (785),  Expect = 9e-107, Method: Composition-based stats.
 Identities = 109/201 (54%), Positives = 127/201 (63%), Gaps = 35/201 (17%)

Query  10   SWISSFCSLMGHEFFAEVSEDFIEDDFNLTGLQSQVPMYKEALEMILDVEPEEDEDEEEE  69
            SWIS FCSL G+EFF EV EDFIEDDFNLTGL +QVP YKEALEMILDVE          
Sbjct  1    SWISWFCSLKGNEFFCEVDEDFIEDDFNLTGLSAQVPNYKEALEMILDVED---------  51

Query  70   EEEEEEDDDEILGDERPPGYRRAGDRRHARVASDLSVIESSAELLYGLIHQRYITSRPGI  129
                                             D S +ESSAELLYGLIH RYI +  G+
Sbjct  52   --------------------------EEKLDDEDRSEVESSAELLYGLIHARYILTPRGL  85

Query  130  QQMLEKYEMQHFGVCPRTYCNGSKVLPVGCSDTPGQETVKLFCPSCQDLYTPPNSRFHSV  189
            Q+MLEKYE   FG CPR YCNG  +LPVG SD PG+ TVKL+CP C D+Y P +SR  ++
Sbjct  86   QKMLEKYERGDFGRCPRVYCNGQPLLPVGLSDIPGESTVKLYCPRCNDVYLPKSSRSRNI  145

Query  190  DGAFFGTTFGYLFFMTFPDLD  210
            DGAFFGT+F +LF +T+P+L 
Sbjct  146  DGAFFGTSFPHLFLLTYPELV  166



Lambda      K        H        a         alpha
   0.315    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00030000

Length=415


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00034736

Length=415


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00030002

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00030005

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.492    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00030003

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00030004

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00030006

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  74.6    3e-17


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 74.6 bits (184),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 29/71 (41%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query  50   LFVRSLPTSATTESLTEYFSQSYVIKHAIVVNDPETKLCKGYGFVTFADLEDAQAALKEF  109
            LFV +LP   T E L + FS+   IK   +V D ET   KG+ FV F D EDA+ A++  
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  110  NGSVFEGKTIR  120
            NG    G+ ++
Sbjct  60   NGKELGGRELK  70


 Score = 68.0 bits (167),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 24/64 (38%), Positives = 37/64 (58%), Gaps = 1/64 (2%)

Query  327  IFIRNLPFSCTDEALYEHFTQFGPLRYARIVVDPETERPRGTGFVCFWKVEDAALCVREA  386
            +F+ NLP   T+E L + F++FGP++  R+V D ET R +G  FV F   EDA   +   
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  387  PKQQ  390
              ++
Sbjct  60   NGKE  63


 Score = 66.9 bits (164),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 30/70 (43%), Positives = 41/70 (59%), Gaps = 2/70 (3%)

Query  163  LIVRNLPWSIKEPEDLAVHFRSFGKVKYVTLPKKGDKLA-GFGFVVLRGKKNAEKALQAV  221
            L V NLP    E EDL   F  FG +K + L +     + GF FV    +++AEKA++A+
Sbjct  1    LFVGNLPPDTTE-EDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  222  NGKEVDGRTL  231
            NGKE+ GR L
Sbjct  60   NGKELGGREL  69



Lambda      K        H        a         alpha
   0.310    0.128    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00034738

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425453 pfam00076, RRM_1, RNA recognition motif. (a.k.a. RRM, ...  74.6    3e-17


>CDD:425453 pfam00076, RRM_1, RNA recognition motif.  (a.k.a. RRM, RBD, or 
RNP domain). The RRM motif is probably diagnostic of an RNA 
binding protein. RRMs are found in a variety of RNA binding 
proteins, including various hnRNP proteins, proteins implicated 
in regulation of alternative splicing, and protein components 
of snRNPs. The motif also appears in a few single stranded 
DNA binding proteins. The RRM structure consists of four 
strands and two helices arranged in an alpha/beta sandwich, 
with a third helix present during RNA binding in some cases 
The C-terminal beta strand (4th strand) and final helix 
are hard to align and have been omitted in the SEED alignment 
The LA proteins have an N terminal rrm which is included in 
the seed. There is a second region towards the C-terminus 
that has some features characteristic of a rrm but does not 
appear to have the important structural core of a rrm. The LA 
proteins are one of the main autoantigens in Systemic lupus 
erythematosus (SLE), an autoimmune disease.
Length=70

 Score = 74.6 bits (184),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 29/71 (41%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query  50   LFVRSLPTSATTESLTEYFSQSYVIKHAIVVNDPETKLCKGYGFVTFADLEDAQAALKEF  109
            LFV +LP   T E L + FS+   IK   +V D ET   KG+ FV F D EDA+ A++  
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  110  NGSVFEGKTIR  120
            NG    G+ ++
Sbjct  60   NGKELGGRELK  70


 Score = 68.0 bits (167),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 24/64 (38%), Positives = 37/64 (58%), Gaps = 1/64 (2%)

Query  327  IFIRNLPFSCTDEALYEHFTQFGPLRYARIVVDPETERPRGTGFVCFWKVEDAALCVREA  386
            +F+ NLP   T+E L + F++FGP++  R+V D ET R +G  FV F   EDA   +   
Sbjct  1    LFVGNLPPDTTEEDLKDLFSKFGPIKSIRLVRD-ETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  387  PKQQ  390
              ++
Sbjct  60   NGKE  63


 Score = 66.9 bits (164),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 30/70 (43%), Positives = 41/70 (59%), Gaps = 2/70 (3%)

Query  163  LIVRNLPWSIKEPEDLAVHFRSFGKVKYVTLPKKGDKLA-GFGFVVLRGKKNAEKALQAV  221
            L V NLP    E EDL   F  FG +K + L +     + GF FV    +++AEKA++A+
Sbjct  1    LFVGNLPPDTTE-EDLKDLFSKFGPIKSIRLVRDETGRSKGFAFVEFEDEEDAEKAIEAL  59

Query  222  NGKEVDGRTL  231
            NGKE+ GR L
Sbjct  60   NGKELGGREL  69



Lambda      K        H        a         alpha
   0.310    0.128    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 940028192


Query= TCONS_00030016

Length=383


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00030017

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427938 pfam04420, CHD5, CHD5-like protein. Members of this fa...  235     1e-80


>CDD:427938 pfam04420, CHD5, CHD5-like protein.  Members of this family are 
probably coiled-coil proteins that are similar to the CHD5 
(Congenital heart disease 5) protein. In Saccharomyces cerevisiae 
this protein localizes to the ER and is thought to play 
a homeostatic role.
Length=158

 Score = 235 bits (602),  Expect = 1e-80, Method: Composition-based stats.
 Identities = 90/160 (56%), Positives = 120/160 (75%), Gaps = 2/160 (1%)

Query  7    TIFFVHVAIYLVNTVGATTIDTLLWILYLKLPTSTSRNARQQSRLKREVVQLKREMNNTS  66
             +F + + I L+NT+G  TI+ LLW+LYLKL  STS+ A++Q +LK E+++LK E+N TS
Sbjct  1    VVFLLILLIKLINTIGKDTINNLLWLLYLKL--STSKLAKEQRKLKAEILKLKEELNATS  58

Query  67   SQDEFAKWAKLRRKHDKAMDEYEAMNKKLTAQKTSFDWSVKIARWLSTNGLKIFLQFYYS  126
            +QDEFAKWAKL RKHDK ++E E + K L++ K+SFD  +K  RW+ T G + FL+F+Y 
Sbjct  59   AQDEFAKWAKLNRKHDKLLEELEKLKKSLSSAKSSFDKLLKKVRWVLTTGPQFFLKFWYR  118

Query  127  KTPVFALPAGWFPFYVEWVLSFPRAPRGSVSVQVWNSVCA  166
            KTPVF LP GWFP+YVEW+LSFP AP GSVS+ VW   C 
Sbjct  119  KTPVFWLPKGWFPYYVEWLLSFPTAPLGSVSLTVWLFACN  158



Lambda      K        H        a         alpha
   0.322    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00030018

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.123    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00030019

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00030020

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.113    0.276    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00030021

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427938 pfam04420, CHD5, CHD5-like protein. Members of this fa...  235     1e-80


>CDD:427938 pfam04420, CHD5, CHD5-like protein.  Members of this family are 
probably coiled-coil proteins that are similar to the CHD5 
(Congenital heart disease 5) protein. In Saccharomyces cerevisiae 
this protein localizes to the ER and is thought to play 
a homeostatic role.
Length=158

 Score = 235 bits (602),  Expect = 1e-80, Method: Composition-based stats.
 Identities = 90/160 (56%), Positives = 120/160 (75%), Gaps = 2/160 (1%)

Query  7    TIFFVHVAIYLVNTVGATTIDTLLWILYLKLPTSTSRNARQQSRLKREVVQLKREMNNTS  66
             +F + + I L+NT+G  TI+ LLW+LYLKL  STS+ A++Q +LK E+++LK E+N TS
Sbjct  1    VVFLLILLIKLINTIGKDTINNLLWLLYLKL--STSKLAKEQRKLKAEILKLKEELNATS  58

Query  67   SQDEFAKWAKLRRKHDKAMDEYEAMNKKLTAQKTSFDWSVKIARWLSTNGLKIFLQFYYS  126
            +QDEFAKWAKL RKHDK ++E E + K L++ K+SFD  +K  RW+ T G + FL+F+Y 
Sbjct  59   AQDEFAKWAKLNRKHDKLLEELEKLKKSLSSAKSSFDKLLKKVRWVLTTGPQFFLKFWYR  118

Query  127  KTPVFALPAGWFPFYVEWVLSFPRAPRGSVSVQVWNSVCA  166
            KTPVF LP GWFP+YVEW+LSFP AP GSVS+ VW   C 
Sbjct  119  KTPVFWLPKGWFPYYVEWLLSFPTAPLGSVSLTVWLFACN  158



Lambda      K        H        a         alpha
   0.322    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00030022

Length=119
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427938 pfam04420, CHD5, CHD5-like protein. Members of this fa...  124     3e-38


>CDD:427938 pfam04420, CHD5, CHD5-like protein.  Members of this family are 
probably coiled-coil proteins that are similar to the CHD5 
(Congenital heart disease 5) protein. In Saccharomyces cerevisiae 
this protein localizes to the ER and is thought to play 
a homeostatic role.
Length=158

 Score = 124 bits (314),  Expect = 3e-38, Method: Composition-based stats.
 Identities = 47/87 (54%), Positives = 66/87 (76%), Gaps = 2/87 (2%)

Query  7   TIFFVHVAIYLVNTVGATTIDTLLWILYLKLPTSTSRNARQQSRLKREVVQLKREMNNTS  66
            +F + + I L+NT+G  TI+ LLW+LYLKL  STS+ A++Q +LK E+++LK E+N TS
Sbjct  1   VVFLLILLIKLINTIGKDTINNLLWLLYLKL--STSKLAKEQRKLKAEILKLKEELNATS  58

Query  67  SQDEFAKWAKLRRKHDKAMDEYEAMSS  93
           +QDEFAKWAKL RKHDK ++E E +  
Sbjct  59  AQDEFAKWAKLNRKHDKLLEELEKLKK  85



Lambda      K        H        a         alpha
   0.326    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00030023

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00034743

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00030024

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00030025

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00034744

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00034745

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00034746

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00034747

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.122    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00030026

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.118    0.328    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00030027

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00034749

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00034750

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        68.8    2e-15


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 68.8 bits (169),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 22/85 (26%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query  48   VASATSTICATLSVTPLENIKTRMQTHN------FQNVFQCVRYLWRTEGPRGYVAGALP  101
            +A   +   A     PL+ +KTR+Q          + +  C + +++ EG RG   G LP
Sbjct  10   LAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLLP  69

Query  102  PLASVTAVRVVNFSTYNVAKHRISE  126
             L  V     + F TY   K  + +
Sbjct  70   NLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 65.4 bits (160),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 25/97 (26%), Positives = 40/97 (41%), Gaps = 16/97 (16%)

Query  158  AGFIAGLITSPLACPFELAKNVVQTSVLVAHRSQASPDAVRDPSLRTRPRLGTIEAIRQI  217
            AG IAG I   +  P ++ K  +Q                           G ++  ++I
Sbjct  11   AGGIAGAIAVTVTYPLDVVKTRLQV----------------QGGSGKSKGRGILDCFKKI  54

Query  218  VRRYGFRGLYTGFHLHAMRDTIGSGLYFSVYETVKQL  254
             +  G RGLY G   + +R    + +YF  YET+K+L
Sbjct  55   YKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKRL  91



Lambda      K        H        a         alpha
   0.320    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00030030

Length=418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460803 pfam03097, BRO1, BRO1-like domain. This domain is foun...  447     2e-157


>CDD:460803 pfam03097, BRO1, BRO1-like domain.  This domain is found in a 
number proteins including Rhophilin and BRO1. It is known to 
have a role in endosomal targeting. ESCRT-III subunit Snf7 
binds to a conserved hydrophobic patch in the BRO1 domain that 
is required for protein complex formation and for the protein-sorting 
function of BRO1.
Length=366

 Score = 447 bits (1151),  Expect = 2e-157, Method: Composition-based stats.
 Identities = 176/381 (46%), Positives = 240/381 (63%), Gaps = 18/381 (5%)

Query  11   ILQVPFRRSHAVSLSDAITQYISSKYD-QRPDMFADDLLIIDRLRNEAINVQEPHVSGIS  69
            +L +P +++  V L   +  YISS Y  Q P  F DDL  +++LR +A+       SG+ 
Sbjct  1    LLSIPLKKTEEVDLKKPLKNYISSTYGSQDPSSFEDDLAELNKLRQDAVRGANEDESGLD  60

Query  70   RLVTYAAQLKWLGGKFPVD--VGVEFPWYPAFGFNTTRPISQNNLRFELANILFNLAALY  127
             L  Y AQL+ L  +FP+D  +G+EF WY AFG  +++ +SQ++L FE A++LFN+AALY
Sbjct  61   LLYKYYAQLELLELRFPIDIQIGIEFTWYDAFG-TSSKKVSQSSLAFEKASVLFNIAALY  119

Query  128  SQLAFSVNRTTSDGLKQACNYFCQSAGVLLHLRADILPDLRTSPPEDMDEMTLQSLEQLL  187
            SQLA S NR+T +GLK+AC YF Q+AG   +L+ + L     +P  D+   TL++L  L+
Sbjct  120  SQLAASQNRSTDEGLKRACKYFQQAAGCFQYLKENFLH----APSPDLSPETLKALSNLM  175

Query  188  LAQAQECFWQKAVKDGLKDASIARLAAKVSDFYAEAGDCAVKSNAVSPEWIHHMTAKHHH  247
            LAQAQECFW+KA+ D  KD+ IA+LAA+VS+ Y EA +    S  +  EWI H+ AK HH
Sbjct  176  LAQAQECFWEKAINDNKKDSLIAKLAAQVSELYEEALEALKLSGLIDKEWISHVQAKAHH  235

Query  248  FAAAAQYRQSLDCLEKRKYGEEVARLRDSEACVNEALKESRWINRAVLGDLNGLKSRVSE  307
            F A AQYRQ+LD  E +KYGEE+ARL+ + + + EALK  R+  + VL DL GL   V E
Sbjct  236  FKALAQYRQALDDEEAKKYGEEIARLQLALSLLKEALKSDRY--KKVLEDLKGLLDVVEE  293

Query  308  DLKRATKDNDVIYLNPVPPKSELKIIDRACMVAAKAPSQVTDAISMLGENGPLGQPLFAK  367
             LKRA KDND IY   VP +S L  I  A MV    P ++            +G  LF K
Sbjct  294  KLKRAEKDNDFIYHERVPSESSLPPIKPASMVKPIPPLEL--------YPFQIGPDLFKK  345

Query  368  LVPYAVHIAASIYSDRRDRLV  388
            LVP +VH AAS YS+R+ +LV
Sbjct  346  LVPLSVHEAASAYSERKAKLV  366



Lambda      K        H        a         alpha
   0.322    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00030028

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00030029

Length=779
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460803 pfam03097, BRO1, BRO1-like domain. This domain is foun...  446     6e-152
CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain bindin...  331     1e-108


>CDD:460803 pfam03097, BRO1, BRO1-like domain.  This domain is found in a 
number proteins including Rhophilin and BRO1. It is known to 
have a role in endosomal targeting. ESCRT-III subunit Snf7 
binds to a conserved hydrophobic patch in the BRO1 domain that 
is required for protein complex formation and for the protein-sorting 
function of BRO1.
Length=366

 Score = 446 bits (1149),  Expect = 6e-152, Method: Composition-based stats.
 Identities = 176/381 (46%), Positives = 239/381 (63%), Gaps = 18/381 (5%)

Query  52   ILQVPFRRSHAVSLSDAITQYISSKYD-QRPDMFADDLLIIDRLRNEAINVQEPHVSGIS  110
            +L +P +++  V L   +  YISS Y  Q P  F DDL  +++LR +A+       SG+ 
Sbjct  1    LLSIPLKKTEEVDLKKPLKNYISSTYGSQDPSSFEDDLAELNKLRQDAVRGANEDESGLD  60

Query  111  RLVTYAAQLKWLGGKFPVD--VGVEFPWYPAFGFNTTRPISQNNLRFELANILFNLAALY  168
             L  Y AQL+ L  +FP+D  +G+EF WY AFG  +++ +SQ++L FE A++LFN+AALY
Sbjct  61   LLYKYYAQLELLELRFPIDIQIGIEFTWYDAFG-TSSKKVSQSSLAFEKASVLFNIAALY  119

Query  169  SQLAFSVNRTTSDGLKQACNYFCQSAGVLLHLRADILPDLRTSPPEDMDEMTLQSLEQLL  228
            SQLA S NR+T +GLK+AC YF Q+AG   +L+ + L     +P  D+   TL++L  L+
Sbjct  120  SQLAASQNRSTDEGLKRACKYFQQAAGCFQYLKENFLH----APSPDLSPETLKALSNLM  175

Query  229  LAQAQECFWQKAVKDGLKDASIARLAAKVSDFYAEAGDCAVKSNAVSPEWIHHMTAKHHH  288
            LAQAQECFW+KA+ D  KD+ IA+LAA+VS+ Y EA +    S  +  EWI H+ AK HH
Sbjct  176  LAQAQECFWEKAINDNKKDSLIAKLAAQVSELYEEALEALKLSGLIDKEWISHVQAKAHH  235

Query  289  FAAAAQYRQSLDCLEKRKYGEEVARLRDSEACVNEALKESRWINRAVLGDLNGLKSRVSE  348
            F A AQYRQ+LD  E +KYGEE+ARL+ + + + EALK  R+    VL DL GL   V E
Sbjct  236  FKALAQYRQALDDEEAKKYGEEIARLQLALSLLKEALKSDRYKK--VLEDLKGLLDVVEE  293

Query  349  DLKRATKDNDVIYLNPVPPKSELKIIDRACMVAAKAPSQVTDAISMLGENGPLGQPLFAK  408
             LKRA KDND IY   VP +S L  I  A MV    P ++            +G  LF K
Sbjct  294  KLKRAEKDNDFIYHERVPSESSLPPIKPASMVKPIPPLEL--------YPFQIGPDLFKK  345

Query  409  LVPYAVHIAASIYSDRRDRLV  429
            LVP +VH AAS YS+R+ +LV
Sbjct  346  LVPLSVHEAASAYSERKAKLV  366


>CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV. 
 The binding of the LYPxL motif of late HIV p6Gag and EIAV 
p9Gag to this domain is necessary for viral budding.This domain 
is generally central between an N-terminal Bro1 domain, 
pfam03097 and a C-terminal proline-rich domain. The retroviruses 
thus used this domain to hijack the ESCRT system of the 
cell.
Length=294

 Score = 331 bits (851),  Expect = 1e-108, Method: Composition-based stats.
 Identities = 123/303 (41%), Positives = 182/303 (60%), Gaps = 10/303 (3%)

Query  465  GLPPTLVAHAEEMRQQDGLHRLRRSLEDIAKVKANDKAVYNEGVELLAAEKAEDEASRRK  524
            GLPP+L   AEE+RQQ G+ RL +SL+D+ K+K  ++ + +E  +LL  E++EDE  R K
Sbjct  1    GLPPSLREKAEEVRQQGGIERLEKSLDDLPKLKQRNREILDEAEKLLDEEESEDEQLRAK  60

Query  525  YGTDRWTRQTSEAAAPKLYTTSSEISGYFTSAQSSDNLVEQKLRDSEAVFRVLTGTNRDL  584
            YGT RWTR  S      L     +       A  SD+ V  K R+ E    +L+G + DL
Sbjct  61   YGT-RWTRPPSSELTATLRAEIRKYREILEQASESDSQVRSKFREHEEDLELLSGPDEDL  119

Query  585  EMYVPSSRRAAIPPEVERELIRLRGCLSEVSRLESRRKRRAQALKEKARADDVTQALLKE  644
            E ++PSSRRA   P VE ++ +LR  L++++ L+  R++  + LKEKAR DD++  LL E
Sbjct  120  EAFLPSSRRAKNSPSVEEQVAKLRELLNKLNELKREREQLLKDLKEKARNDDISPKLLLE  179

Query  645  TARLEREFPMQPIQASQFEDLFEDQLHLYDSDLEMVAQEQHDQDQIAAQVREANRAFTRA  704
             ARL        I  +Q E LFE++L  YD     + Q  H Q+++  ++ EAN  F + 
Sbjct  180  KARL--------IAPNQEEQLFEEELEKYDPLQNRLEQNLHKQEELLKEITEANNEFLQD  231

Query  705  HKGDAST-KEREKALQELENGYLKYKEIISNIEVGRKFYNDLAKIVGRFRDDCKAFVHQR  763
             + D+   ++RE+ALQ+LEN Y KYKE++SN++ G KFYNDL +I+ +     K FV+ R
Sbjct  232  KRVDSEKQRQREEALQKLENAYDKYKELVSNLQEGLKFYNDLTEILEKLLKKVKDFVNAR  291

Query  764  RME  766
            R E
Sbjct  292  RSE  294



Lambda      K        H        a         alpha
   0.317    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 996779120


Query= TCONS_00030031

Length=148
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460803 pfam03097, BRO1, BRO1-like domain. This domain is foun...  109     3e-30


>CDD:460803 pfam03097, BRO1, BRO1-like domain.  This domain is found in a 
number proteins including Rhophilin and BRO1. It is known to 
have a role in endosomal targeting. ESCRT-III subunit Snf7 
binds to a conserved hydrophobic patch in the BRO1 domain that 
is required for protein complex formation and for the protein-sorting 
function of BRO1.
Length=366

 Score = 109 bits (276),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 37/93 (40%), Positives = 54/93 (58%), Gaps = 3/93 (3%)

Query  52   ILQVPFRRSHAVSLSDAITQYISSKYD-QRPDMFADDLLIIDRLRNEAINVQEPHVSGIS  110
            +L +P +++  V L   +  YISS Y  Q P  F DDL  +++LR +A+       SG+ 
Sbjct  1    LLSIPLKKTEEVDLKKPLKNYISSTYGSQDPSSFEDDLAELNKLRQDAVRGANEDESGLD  60

Query  111  RLVTYAAQLKWLGGKFPVD--VGVEFPWYPAFG  141
             L  Y AQL+ L  +FP+D  +G+EF WY AFG
Sbjct  61   LLYKYYAQLELLELRFPIDIQIGIEFTWYDAFG  93



Lambda      K        H        a         alpha
   0.321    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00030033

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain bindin...  284     3e-96


>CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV. 
 The binding of the LYPxL motif of late HIV p6Gag and EIAV 
p9Gag to this domain is necessary for viral budding.This domain 
is generally central between an N-terminal Bro1 domain, 
pfam03097 and a C-terminal proline-rich domain. The retroviruses 
thus used this domain to hijack the ESCRT system of the 
cell.
Length=294

 Score = 284 bits (728),  Expect = 3e-96, Method: Composition-based stats.
 Identities = 115/291 (40%), Positives = 173/291 (59%), Gaps = 10/291 (3%)

Query  1    MRQQDGLHRLRRSLEDIAKVKANDKAVYNEGVELLAAEKAEDEASRRKYGTDRWTRQTSE  60
            +RQQ G+ RL +SL+D+ K+K  ++ + +E  +LL  E++EDE  R KYGT RWTR  S 
Sbjct  13   VRQQGGIERLEKSLDDLPKLKQRNREILDEAEKLLDEEESEDEQLRAKYGT-RWTRPPSS  71

Query  61   AAAPKLYTTSSEISGYFTSAQSSDNLVEQKLRDSEAVFRVLTGTNRDLEMYVPSSRRAAI  120
                 L     +       A  SD+ V  K R+ E    +L+G + DLE ++PSSRRA  
Sbjct  72   ELTATLRAEIRKYREILEQASESDSQVRSKFREHEEDLELLSGPDEDLEAFLPSSRRAKN  131

Query  121  PPEVERELIRLRGCLSEVSRLESRRKRRAQALKEKARADDVTQALLKETARLEREFPMQP  180
             P VE ++ +LR  L++++ L+  R++  + LKEKAR DD++  LL E ARL        
Sbjct  132  SPSVEEQVAKLRELLNKLNELKREREQLLKDLKEKARNDDISPKLLLEKARL--------  183

Query  181  IQASQFEDLFEDQLHLYDSDLEMVAQEQHDQDQIAAQVREANRAFTRAHKGDAST-KERE  239
            I  +Q E LFE++L  YD     + Q  H Q+++  ++ EAN  F +  + D+   ++RE
Sbjct  184  IAPNQEEQLFEEELEKYDPLQNRLEQNLHKQEELLKEITEANNEFLQDKRVDSEKQRQRE  243

Query  240  KALQELENGYLKYKEIISNIEVGRKFYNDLAKIVGRFRDDCKAFVHQRRME  290
            +ALQ+LEN Y KYKE++SN++ G KFYNDL +I+ +     K FV+ RR E
Sbjct  244  EALQKLENAYDKYKELVSNLQEGLKFYNDLTEILEKLLKKVKDFVNARRSE  294



Lambda      K        H        a         alpha
   0.315    0.129    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00030032

Length=418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460803 pfam03097, BRO1, BRO1-like domain. This domain is foun...  447     2e-157


>CDD:460803 pfam03097, BRO1, BRO1-like domain.  This domain is found in a 
number proteins including Rhophilin and BRO1. It is known to 
have a role in endosomal targeting. ESCRT-III subunit Snf7 
binds to a conserved hydrophobic patch in the BRO1 domain that 
is required for protein complex formation and for the protein-sorting 
function of BRO1.
Length=366

 Score = 447 bits (1151),  Expect = 2e-157, Method: Composition-based stats.
 Identities = 176/381 (46%), Positives = 240/381 (63%), Gaps = 18/381 (5%)

Query  11   ILQVPFRRSHAVSLSDAITQYISSKYD-QRPDMFADDLLIIDRLRNEAINVQEPHVSGIS  69
            +L +P +++  V L   +  YISS Y  Q P  F DDL  +++LR +A+       SG+ 
Sbjct  1    LLSIPLKKTEEVDLKKPLKNYISSTYGSQDPSSFEDDLAELNKLRQDAVRGANEDESGLD  60

Query  70   RLVTYAAQLKWLGGKFPVD--VGVEFPWYPAFGFNTTRPISQNNLRFELANILFNLAALY  127
             L  Y AQL+ L  +FP+D  +G+EF WY AFG  +++ +SQ++L FE A++LFN+AALY
Sbjct  61   LLYKYYAQLELLELRFPIDIQIGIEFTWYDAFG-TSSKKVSQSSLAFEKASVLFNIAALY  119

Query  128  SQLAFSVNRTTSDGLKQACNYFCQSAGVLLHLRADILPDLRTSPPEDMDEMTLQSLEQLL  187
            SQLA S NR+T +GLK+AC YF Q+AG   +L+ + L     +P  D+   TL++L  L+
Sbjct  120  SQLAASQNRSTDEGLKRACKYFQQAAGCFQYLKENFLH----APSPDLSPETLKALSNLM  175

Query  188  LAQAQECFWQKAVKDGLKDASIARLAAKVSDFYAEAGDCAVKSNAVSPEWIHHMTAKHHH  247
            LAQAQECFW+KA+ D  KD+ IA+LAA+VS+ Y EA +    S  +  EWI H+ AK HH
Sbjct  176  LAQAQECFWEKAINDNKKDSLIAKLAAQVSELYEEALEALKLSGLIDKEWISHVQAKAHH  235

Query  248  FAAAAQYRQSLDCLEKRKYGEEVARLRDSEACVNEALKESRWINRAVLGDLNGLKSRVSE  307
            F A AQYRQ+LD  E +KYGEE+ARL+ + + + EALK  R+  + VL DL GL   V E
Sbjct  236  FKALAQYRQALDDEEAKKYGEEIARLQLALSLLKEALKSDRY--KKVLEDLKGLLDVVEE  293

Query  308  DLKRATKDNDVIYLNPVPPKSELKIIDRACMVAAKAPSQVTDAISMLGENGPLGQPLFAK  367
             LKRA KDND IY   VP +S L  I  A MV    P ++            +G  LF K
Sbjct  294  KLKRAEKDNDFIYHERVPSESSLPPIKPASMVKPIPPLEL--------YPFQIGPDLFKK  345

Query  368  LVPYAVHIAASIYSDRRDRLV  388
            LVP +VH AAS YS+R+ +LV
Sbjct  346  LVPLSVHEAASAYSERKAKLV  366



Lambda      K        H        a         alpha
   0.322    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00030034

Length=660
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain bindin...  328     2e-108
CDD:460803 pfam03097, BRO1, BRO1-like domain. This domain is foun...  254     2e-79 


>CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV. 
 The binding of the LYPxL motif of late HIV p6Gag and EIAV 
p9Gag to this domain is necessary for viral budding.This domain 
is generally central between an N-terminal Bro1 domain, 
pfam03097 and a C-terminal proline-rich domain. The retroviruses 
thus used this domain to hijack the ESCRT system of the 
cell.
Length=294

 Score = 328 bits (842),  Expect = 2e-108, Method: Composition-based stats.
 Identities = 123/303 (41%), Positives = 182/303 (60%), Gaps = 10/303 (3%)

Query  250  GLPPTLVAHAEEMRQQDGLHRLRRSLEDIAKVKANDKAVYNEGVELLAAEKAEDEASRRK  309
            GLPP+L   AEE+RQQ G+ RL +SL+D+ K+K  ++ + +E  +LL  E++EDE  R K
Sbjct  1    GLPPSLREKAEEVRQQGGIERLEKSLDDLPKLKQRNREILDEAEKLLDEEESEDEQLRAK  60

Query  310  YGTDRWTRQTSEAAAPKLYTTSSEISGYFTSAQSSDNLVEQKLRDSEAVFRVLTGTNRDL  369
            YGT RWTR  S      L     +       A  SD+ V  K R+ E    +L+G + DL
Sbjct  61   YGT-RWTRPPSSELTATLRAEIRKYREILEQASESDSQVRSKFREHEEDLELLSGPDEDL  119

Query  370  EMYVPSSRRAAIPPEVERELIRLRGCLSEVSRLESRRKRRAQALKEKARADDVTQALLKE  429
            E ++PSSRRA   P VE ++ +LR  L++++ L+  R++  + LKEKAR DD++  LL E
Sbjct  120  EAFLPSSRRAKNSPSVEEQVAKLRELLNKLNELKREREQLLKDLKEKARNDDISPKLLLE  179

Query  430  TARLEREFPMQPIQASQFEDLFEDQLHLYDSDLEMVAQEQHDQDQIAAQVREANRAFTRA  489
             ARL        I  +Q E LFE++L  YD     + Q  H Q+++  ++ EAN  F + 
Sbjct  180  KARL--------IAPNQEEQLFEEELEKYDPLQNRLEQNLHKQEELLKEITEANNEFLQD  231

Query  490  HKGDAST-KEREKALQELENGYLKYKEIISNIEVGRKFYNDLAKIVGRFRDDCKAFVHQR  548
             + D+   ++RE+ALQ+LEN Y KYKE++SN++ G KFYNDL +I+ +     K FV+ R
Sbjct  232  KRVDSEKQRQREEALQKLENAYDKYKELVSNLQEGLKFYNDLTEILEKLLKKVKDFVNAR  291

Query  549  RME  551
            R E
Sbjct  292  RSE  294


>CDD:460803 pfam03097, BRO1, BRO1-like domain.  This domain is found in a 
number proteins including Rhophilin and BRO1. It is known to 
have a role in endosomal targeting. ESCRT-III subunit Snf7 
binds to a conserved hydrophobic patch in the BRO1 domain that 
is required for protein complex formation and for the protein-sorting 
function of BRO1.
Length=366

 Score = 254 bits (652),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 104/214 (49%), Positives = 134/214 (63%), Gaps = 10/214 (5%)

Query  1    MDEMTLQSLEQLLLAQAQECFWQKAVKDGLKDASIARLAAKVSDFYAEAGDCAVKSNAVS  60
            +   TL++L  L+LAQAQECFW+KA+ D  KD+ IA+LAA+VS+ Y EA +    S  + 
Sbjct  163  LSPETLKALSNLMLAQAQECFWEKAINDNKKDSLIAKLAAQVSELYEEALEALKLSGLID  222

Query  61   PEWIHHMTAKHHHFAAAAQYRQSLDCLEKRKYGEEVARLRDSEACVNEALKESRWINRAV  120
             EWI H+ AK HHF A AQYRQ+LD  E +KYGEE+ARL+ + + + EALK  R+  + V
Sbjct  223  KEWISHVQAKAHHFKALAQYRQALDDEEAKKYGEEIARLQLALSLLKEALKSDRY--KKV  280

Query  121  LGDLNGLKSRVSEDLKRATKDNDVIYLNPVPPKSELKIIDRACMVAAKAPSQVTDAISML  180
            L DL GL   V E LKRA KDND IY   VP +S L  I  A MV    P ++       
Sbjct  281  LEDLKGLLDVVEEKLKRAEKDNDFIYHERVPSESSLPPIKPASMVKPIPPLEL-------  333

Query  181  GENGPLGQPLFAKLVPYAVHIAASIYSDRRDRLV  214
                 +G  LF KLVP +VH AAS YS+R+ +LV
Sbjct  334  -YPFQIGPDLFKKLVPLSVHEAASAYSERKAKLV  366



Lambda      K        H        a         alpha
   0.315    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 836205930


Query= TCONS_00030035

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        65.0    5e-14


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 65.0 bits (159),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 25/97 (26%), Positives = 40/97 (41%), Gaps = 16/97 (16%)

Query  140  AGFIAGLITSPLACPFELAKNVVQTSVLVAHRSQASPDAVRDPSLRTRPRLGTIEAIRQI  199
            AG IAG I   +  P ++ K  +Q                           G ++  ++I
Sbjct  11   AGGIAGAIAVTVTYPLDVVKTRLQV----------------QGGSGKSKGRGILDCFKKI  54

Query  200  VRRYGFRGLYTGFHLHAMRDTIGSGLYFSVYETVKQL  236
             +  G RGLY G   + +R    + +YF  YET+K+L
Sbjct  55   YKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKRL  91



Lambda      K        H        a         alpha
   0.319    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0794    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00034751

Length=244
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460803 pfam03097, BRO1, BRO1-like domain. This domain is foun...  250     3e-83


>CDD:460803 pfam03097, BRO1, BRO1-like domain.  This domain is found in a 
number proteins including Rhophilin and BRO1. It is known to 
have a role in endosomal targeting. ESCRT-III subunit Snf7 
binds to a conserved hydrophobic patch in the BRO1 domain that 
is required for protein complex formation and for the protein-sorting 
function of BRO1.
Length=366

 Score = 250 bits (642),  Expect = 3e-83, Method: Composition-based stats.
 Identities = 104/214 (49%), Positives = 133/214 (62%), Gaps = 10/214 (5%)

Query  1    MDEMTLQSLEQLLLAQAQECFWQKAVKDGLKDASIARLAAKVSDFYAEAGDCAVKSNAVS  60
            +   TL++L  L+LAQAQECFW+KA+ D  KD+ IA+LAA+VS+ Y EA +    S  + 
Sbjct  163  LSPETLKALSNLMLAQAQECFWEKAINDNKKDSLIAKLAAQVSELYEEALEALKLSGLID  222

Query  61   PEWIHHMTAKHHHFAAAAQYRQSLDCLEKRKYGEEVARLRDSEACVNEALKESRWINRAV  120
             EWI H+ AK HHF A AQYRQ+LD  E +KYGEE+ARL+ + + + EALK  R+    V
Sbjct  223  KEWISHVQAKAHHFKALAQYRQALDDEEAKKYGEEIARLQLALSLLKEALKSDRYKK--V  280

Query  121  LGDLNGLKSRVSEDLKRATKDNDVIYLNPVPPKSELKIIDRACMVAAKAPSQVTDAISML  180
            L DL GL   V E LKRA KDND IY   VP +S L  I  A MV    P ++       
Sbjct  281  LEDLKGLLDVVEEKLKRAEKDNDFIYHERVPSESSLPPIKPASMVKPIPPLEL-------  333

Query  181  GENGPLGQPLFAKLVPYAVHIAASIYSDRRDRLV  214
                 +G  LF KLVP +VH AAS YS+R+ +LV
Sbjct  334  -YPFQIGPDLFKKLVPLSVHEAASAYSERKAKLV  366



Lambda      K        H        a         alpha
   0.318    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00034752

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain bindin...  317     2e-105
CDD:460803 pfam03097, BRO1, BRO1-like domain. This domain is foun...  250     1e-78 


>CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV. 
 The binding of the LYPxL motif of late HIV p6Gag and EIAV 
p9Gag to this domain is necessary for viral budding.This domain 
is generally central between an N-terminal Bro1 domain, 
pfam03097 and a C-terminal proline-rich domain. The retroviruses 
thus used this domain to hijack the ESCRT system of the 
cell.
Length=294

 Score = 317 bits (814),  Expect = 2e-105, Method: Composition-based stats.
 Identities = 123/303 (41%), Positives = 182/303 (60%), Gaps = 10/303 (3%)

Query  250  GLPPTLVAHAEEMRQQDGLHRLRRSLEDIAKVKANDKAVYNEGVELLAAEKAEDEASRRK  309
            GLPP+L   AEE+RQQ G+ RL +SL+D+ K+K  ++ + +E  +LL  E++EDE  R K
Sbjct  1    GLPPSLREKAEEVRQQGGIERLEKSLDDLPKLKQRNREILDEAEKLLDEEESEDEQLRAK  60

Query  310  YGTDRWTRQTSEAAAPKLYTTSSEISGYFTSAQSSDNLVEQKLRDSEAVFRVLTGTNRDL  369
            YGT RWTR  S      L     +       A  SD+ V  K R+ E    +L+G + DL
Sbjct  61   YGT-RWTRPPSSELTATLRAEIRKYREILEQASESDSQVRSKFREHEEDLELLSGPDEDL  119

Query  370  EMYVPSSRRAAIPPEVERELIRLRGCLSEVSRLESRRKRRAQALKEKARADDVTQALLKE  429
            E ++PSSRRA   P VE ++ +LR  L++++ L+  R++  + LKEKAR DD++  LL E
Sbjct  120  EAFLPSSRRAKNSPSVEEQVAKLRELLNKLNELKREREQLLKDLKEKARNDDISPKLLLE  179

Query  430  TARLEREFPMQPIQASQFEDLFEDQLHLYDSDLEMVAQEQHDQDQIAAQVREANRAFTRA  489
             ARL        I  +Q E LFE++L  YD     + Q  H Q+++  ++ EAN  F + 
Sbjct  180  KARL--------IAPNQEEQLFEEELEKYDPLQNRLEQNLHKQEELLKEITEANNEFLQD  231

Query  490  HKGDAST-KEREKALQELENGYLKYKEIISNIEVGRKFYNDLAKIVGRFRDDCKAFVHQR  548
             + D+   ++RE+ALQ+LEN Y KYKE++SN++ G KFYNDL +I+ +     K FV+ R
Sbjct  232  KRVDSEKQRQREEALQKLENAYDKYKELVSNLQEGLKFYNDLTEILEKLLKKVKDFVNAR  291

Query  549  RME  551
            R E
Sbjct  292  RSE  294


>CDD:460803 pfam03097, BRO1, BRO1-like domain.  This domain is found in a 
number proteins including Rhophilin and BRO1. It is known to 
have a role in endosomal targeting. ESCRT-III subunit Snf7 
binds to a conserved hydrophobic patch in the BRO1 domain that 
is required for protein complex formation and for the protein-sorting 
function of BRO1.
Length=366

 Score = 250 bits (640),  Expect = 1e-78, Method: Composition-based stats.
 Identities = 104/214 (49%), Positives = 133/214 (62%), Gaps = 10/214 (5%)

Query  1    MDEMTLQSLEQLLLAQAQECFWQKAVKDGLKDASIARLAAKVSDFYAEAGDCAVKSNAVS  60
            +   TL++L  L+LAQAQECFW+KA+ D  KD+ IA+LAA+VS+ Y EA +    S  + 
Sbjct  163  LSPETLKALSNLMLAQAQECFWEKAINDNKKDSLIAKLAAQVSELYEEALEALKLSGLID  222

Query  61   PEWIHHMTAKHHHFAAAAQYRQSLDCLEKRKYGEEVARLRDSEACVNEALKESRWINRAV  120
             EWI H+ AK HHF A AQYRQ+LD  E +KYGEE+ARL+ + + + EALK  R+    V
Sbjct  223  KEWISHVQAKAHHFKALAQYRQALDDEEAKKYGEEIARLQLALSLLKEALKSDRYKK--V  280

Query  121  LGDLNGLKSRVSEDLKRATKDNDVIYLNPVPPKSELKIIDRACMVAAKAPSQVTDAISML  180
            L DL GL   V E LKRA KDND IY   VP +S L  I  A MV    P ++       
Sbjct  281  LEDLKGLLDVVEEKLKRAEKDNDFIYHERVPSESSLPPIKPASMVKPIPPLEL-------  333

Query  181  GENGPLGQPLFAKLVPYAVHIAASIYSDRRDRLV  214
                 +G  LF KLVP +VH AAS YS+R+ +LV
Sbjct  334  -YPFQIGPDLFKKLVPLSVHEAASAYSERKAKLV  366



Lambda      K        H        a         alpha
   0.316    0.130    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 705370016


Query= TCONS_00034753

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain bindin...  284     3e-96


>CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV. 
 The binding of the LYPxL motif of late HIV p6Gag and EIAV 
p9Gag to this domain is necessary for viral budding.This domain 
is generally central between an N-terminal Bro1 domain, 
pfam03097 and a C-terminal proline-rich domain. The retroviruses 
thus used this domain to hijack the ESCRT system of the 
cell.
Length=294

 Score = 284 bits (728),  Expect = 3e-96, Method: Composition-based stats.
 Identities = 115/291 (40%), Positives = 173/291 (59%), Gaps = 10/291 (3%)

Query  1    MRQQDGLHRLRRSLEDIAKVKANDKAVYNEGVELLAAEKAEDEASRRKYGTDRWTRQTSE  60
            +RQQ G+ RL +SL+D+ K+K  ++ + +E  +LL  E++EDE  R KYGT RWTR  S 
Sbjct  13   VRQQGGIERLEKSLDDLPKLKQRNREILDEAEKLLDEEESEDEQLRAKYGT-RWTRPPSS  71

Query  61   AAAPKLYTTSSEISGYFTSAQSSDNLVEQKLRDSEAVFRVLTGTNRDLEMYVPSSRRAAI  120
                 L     +       A  SD+ V  K R+ E    +L+G + DLE ++PSSRRA  
Sbjct  72   ELTATLRAEIRKYREILEQASESDSQVRSKFREHEEDLELLSGPDEDLEAFLPSSRRAKN  131

Query  121  PPEVERELIRLRGCLSEVSRLESRRKRRAQALKEKARADDVTQALLKETARLEREFPMQP  180
             P VE ++ +LR  L++++ L+  R++  + LKEKAR DD++  LL E ARL        
Sbjct  132  SPSVEEQVAKLRELLNKLNELKREREQLLKDLKEKARNDDISPKLLLEKARL--------  183

Query  181  IQASQFEDLFEDQLHLYDSDLEMVAQEQHDQDQIAAQVREANRAFTRAHKGDAST-KERE  239
            I  +Q E LFE++L  YD     + Q  H Q+++  ++ EAN  F +  + D+   ++RE
Sbjct  184  IAPNQEEQLFEEELEKYDPLQNRLEQNLHKQEELLKEITEANNEFLQDKRVDSEKQRQRE  243

Query  240  KALQELENGYLKYKEIISNIEVGRKFYNDLAKIVGRFRDDCKAFVHQRRME  290
            +ALQ+LEN Y KYKE++SN++ G KFYNDL +I+ +     K FV+ RR E
Sbjct  244  EALQKLENAYDKYKELVSNLQEGLKFYNDLTEILEKLLKKVKDFVNARRSE  294



Lambda      K        H        a         alpha
   0.315    0.129    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00030036

Length=412
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460803 pfam03097, BRO1, BRO1-like domain. This domain is foun...  447     2e-157


>CDD:460803 pfam03097, BRO1, BRO1-like domain.  This domain is found in a 
number proteins including Rhophilin and BRO1. It is known to 
have a role in endosomal targeting. ESCRT-III subunit Snf7 
binds to a conserved hydrophobic patch in the BRO1 domain that 
is required for protein complex formation and for the protein-sorting 
function of BRO1.
Length=366

 Score = 447 bits (1151),  Expect = 2e-157, Method: Composition-based stats.
 Identities = 176/381 (46%), Positives = 240/381 (63%), Gaps = 18/381 (5%)

Query  5    ILQVPFRRSHAVSLSDAITQYISSKYD-QRPDMFADDLLIIDRLRNEAINVQEPHVSGIS  63
            +L +P +++  V L   +  YISS Y  Q P  F DDL  +++LR +A+       SG+ 
Sbjct  1    LLSIPLKKTEEVDLKKPLKNYISSTYGSQDPSSFEDDLAELNKLRQDAVRGANEDESGLD  60

Query  64   RLVTYAAQLKWLGGKFPVD--VGVEFPWYPAFGFNTTRPISQNNLRFELANILFNLAALY  121
             L  Y AQL+ L  +FP+D  +G+EF WY AFG  +++ +SQ++L FE A++LFN+AALY
Sbjct  61   LLYKYYAQLELLELRFPIDIQIGIEFTWYDAFG-TSSKKVSQSSLAFEKASVLFNIAALY  119

Query  122  SQLAFSVNRTTSDGLKQACNYFCQSAGVLLHLRADILPDLRTSPPEDMDEMTLQSLEQLL  181
            SQLA S NR+T +GLK+AC YF Q+AG   +L+ + L     +P  D+   TL++L  L+
Sbjct  120  SQLAASQNRSTDEGLKRACKYFQQAAGCFQYLKENFLH----APSPDLSPETLKALSNLM  175

Query  182  LAQAQECFWQKAVKDGLKDASIARLAAKVSDFYAEAGDCAVKSNAVSPEWIHHMTAKHHH  241
            LAQAQECFW+KA+ D  KD+ IA+LAA+VS+ Y EA +    S  +  EWI H+ AK HH
Sbjct  176  LAQAQECFWEKAINDNKKDSLIAKLAAQVSELYEEALEALKLSGLIDKEWISHVQAKAHH  235

Query  242  FAAAAQYRQSLDCLEKRKYGEEVARLRDSEACVNEALKESRWINRAVLGDLNGLKSRVSE  301
            F A AQYRQ+LD  E +KYGEE+ARL+ + + + EALK  R+  + VL DL GL   V E
Sbjct  236  FKALAQYRQALDDEEAKKYGEEIARLQLALSLLKEALKSDRY--KKVLEDLKGLLDVVEE  293

Query  302  DLKRATKDNDVIYLNPVPPKSELKIIDRACMVAAKAPSQVTDAISMLGENGPLGQPLFAK  361
             LKRA KDND IY   VP +S L  I  A MV    P ++            +G  LF K
Sbjct  294  KLKRAEKDNDFIYHERVPSESSLPPIKPASMVKPIPPLEL--------YPFQIGPDLFKK  345

Query  362  LVPYAVHIAASIYSDRRDRLV  382
            LVP +VH AAS YS+R+ +LV
Sbjct  346  LVPLSVHEAASAYSERKAKLV  366



Lambda      K        H        a         alpha
   0.320    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 501729466


Query= TCONS_00034754

Length=412
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460803 pfam03097, BRO1, BRO1-like domain. This domain is foun...  447     2e-157


>CDD:460803 pfam03097, BRO1, BRO1-like domain.  This domain is found in a 
number proteins including Rhophilin and BRO1. It is known to 
have a role in endosomal targeting. ESCRT-III subunit Snf7 
binds to a conserved hydrophobic patch in the BRO1 domain that 
is required for protein complex formation and for the protein-sorting 
function of BRO1.
Length=366

 Score = 447 bits (1151),  Expect = 2e-157, Method: Composition-based stats.
 Identities = 176/381 (46%), Positives = 240/381 (63%), Gaps = 18/381 (5%)

Query  5    ILQVPFRRSHAVSLSDAITQYISSKYD-QRPDMFADDLLIIDRLRNEAINVQEPHVSGIS  63
            +L +P +++  V L   +  YISS Y  Q P  F DDL  +++LR +A+       SG+ 
Sbjct  1    LLSIPLKKTEEVDLKKPLKNYISSTYGSQDPSSFEDDLAELNKLRQDAVRGANEDESGLD  60

Query  64   RLVTYAAQLKWLGGKFPVD--VGVEFPWYPAFGFNTTRPISQNNLRFELANILFNLAALY  121
             L  Y AQL+ L  +FP+D  +G+EF WY AFG  +++ +SQ++L FE A++LFN+AALY
Sbjct  61   LLYKYYAQLELLELRFPIDIQIGIEFTWYDAFG-TSSKKVSQSSLAFEKASVLFNIAALY  119

Query  122  SQLAFSVNRTTSDGLKQACNYFCQSAGVLLHLRADILPDLRTSPPEDMDEMTLQSLEQLL  181
            SQLA S NR+T +GLK+AC YF Q+AG   +L+ + L     +P  D+   TL++L  L+
Sbjct  120  SQLAASQNRSTDEGLKRACKYFQQAAGCFQYLKENFLH----APSPDLSPETLKALSNLM  175

Query  182  LAQAQECFWQKAVKDGLKDASIARLAAKVSDFYAEAGDCAVKSNAVSPEWIHHMTAKHHH  241
            LAQAQECFW+KA+ D  KD+ IA+LAA+VS+ Y EA +    S  +  EWI H+ AK HH
Sbjct  176  LAQAQECFWEKAINDNKKDSLIAKLAAQVSELYEEALEALKLSGLIDKEWISHVQAKAHH  235

Query  242  FAAAAQYRQSLDCLEKRKYGEEVARLRDSEACVNEALKESRWINRAVLGDLNGLKSRVSE  301
            F A AQYRQ+LD  E +KYGEE+ARL+ + + + EALK  R+  + VL DL GL   V E
Sbjct  236  FKALAQYRQALDDEEAKKYGEEIARLQLALSLLKEALKSDRY--KKVLEDLKGLLDVVEE  293

Query  302  DLKRATKDNDVIYLNPVPPKSELKIIDRACMVAAKAPSQVTDAISMLGENGPLGQPLFAK  361
             LKRA KDND IY   VP +S L  I  A MV    P ++            +G  LF K
Sbjct  294  KLKRAEKDNDFIYHERVPSESSLPPIKPASMVKPIPPLEL--------YPFQIGPDLFKK  345

Query  362  LVPYAVHIAASIYSDRRDRLV  382
            LVP +VH AAS YS+R+ +LV
Sbjct  346  LVPLSVHEAASAYSERKAKLV  366



Lambda      K        H        a         alpha
   0.320    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 501729466


Query= TCONS_00030037

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460803 pfam03097, BRO1, BRO1-like domain. This domain is foun...  450     6e-153
CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain bindin...  336     5e-110


>CDD:460803 pfam03097, BRO1, BRO1-like domain.  This domain is found in a 
number proteins including Rhophilin and BRO1. It is known to 
have a role in endosomal targeting. ESCRT-III subunit Snf7 
binds to a conserved hydrophobic patch in the BRO1 domain that 
is required for protein complex formation and for the protein-sorting 
function of BRO1.
Length=366

 Score = 450 bits (1160),  Expect = 6e-153, Method: Composition-based stats.
 Identities = 176/381 (46%), Positives = 240/381 (63%), Gaps = 18/381 (5%)

Query  11   ILQVPFRRSHAVSLSDAITQYISSKYD-QRPDMFADDLLIIDRLRNEAINVQEPHVSGIS  69
            +L +P +++  V L   +  YISS Y  Q P  F DDL  +++LR +A+       SG+ 
Sbjct  1    LLSIPLKKTEEVDLKKPLKNYISSTYGSQDPSSFEDDLAELNKLRQDAVRGANEDESGLD  60

Query  70   RLVTYAAQLKWLGGKFPVD--VGVEFPWYPAFGFNTTRPISQNNLRFELANILFNLAALY  127
             L  Y AQL+ L  +FP+D  +G+EF WY AFG  +++ +SQ++L FE A++LFN+AALY
Sbjct  61   LLYKYYAQLELLELRFPIDIQIGIEFTWYDAFG-TSSKKVSQSSLAFEKASVLFNIAALY  119

Query  128  SQLAFSVNRTTSDGLKQACNYFCQSAGVLLHLRADILPDLRTSPPEDMDEMTLQSLEQLL  187
            SQLA S NR+T +GLK+AC YF Q+AG   +L+ + L     +P  D+   TL++L  L+
Sbjct  120  SQLAASQNRSTDEGLKRACKYFQQAAGCFQYLKENFLH----APSPDLSPETLKALSNLM  175

Query  188  LAQAQECFWQKAVKDGLKDASIARLAAKVSDFYAEAGDCAVKSNAVSPEWIHHMTAKHHH  247
            LAQAQECFW+KA+ D  KD+ IA+LAA+VS+ Y EA +    S  +  EWI H+ AK HH
Sbjct  176  LAQAQECFWEKAINDNKKDSLIAKLAAQVSELYEEALEALKLSGLIDKEWISHVQAKAHH  235

Query  248  FAAAAQYRQSLDCLEKRKYGEEVARLRDSEACVNEALKESRWINRAVLGDLNGLKSRVSE  307
            F A AQYRQ+LD  E +KYGEE+ARL+ + + + EALK  R+  + VL DL GL   V E
Sbjct  236  FKALAQYRQALDDEEAKKYGEEIARLQLALSLLKEALKSDRY--KKVLEDLKGLLDVVEE  293

Query  308  DLKRATKDNDVIYLNPVPPKSELKIIDRACMVAAKAPSQVTDAISMLGENGPLGQPLFAK  367
             LKRA KDND IY   VP +S L  I  A MV    P ++            +G  LF K
Sbjct  294  KLKRAEKDNDFIYHERVPSESSLPPIKPASMVKPIPPLEL--------YPFQIGPDLFKK  345

Query  368  LVPYAVHIAASIYSDRRDRLV  388
            LVP +VH AAS YS+R+ +LV
Sbjct  346  LVPLSVHEAASAYSERKAKLV  366


>CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV. 
 The binding of the LYPxL motif of late HIV p6Gag and EIAV 
p9Gag to this domain is necessary for viral budding.This domain 
is generally central between an N-terminal Bro1 domain, 
pfam03097 and a C-terminal proline-rich domain. The retroviruses 
thus used this domain to hijack the ESCRT system of the 
cell.
Length=294

 Score = 336 bits (865),  Expect = 5e-110, Method: Composition-based stats.
 Identities = 123/303 (41%), Positives = 182/303 (60%), Gaps = 10/303 (3%)

Query  424  GLPPTLVAHAEEMRQQDGLHRLRRSLEDIAKVKANDKAVYNEGVELLAAEKAEDEASRRK  483
            GLPP+L   AEE+RQQ G+ RL +SL+D+ K+K  ++ + +E  +LL  E++EDE  R K
Sbjct  1    GLPPSLREKAEEVRQQGGIERLEKSLDDLPKLKQRNREILDEAEKLLDEEESEDEQLRAK  60

Query  484  YGTDRWTRQTSEAAAPKLYTTSSEISGYFTSAQSSDNLVEQKLRDSEAVFRVLTGTNRDL  543
            YGT RWTR  S      L     +       A  SD+ V  K R+ E    +L+G + DL
Sbjct  61   YGT-RWTRPPSSELTATLRAEIRKYREILEQASESDSQVRSKFREHEEDLELLSGPDEDL  119

Query  544  EMYVPSSRRAAIPPEVERELIRLRGCLSEVSRLESRRKRRAQALKEKARADDVTQALLKE  603
            E ++PSSRRA   P VE ++ +LR  L++++ L+  R++  + LKEKAR DD++  LL E
Sbjct  120  EAFLPSSRRAKNSPSVEEQVAKLRELLNKLNELKREREQLLKDLKEKARNDDISPKLLLE  179

Query  604  TARLEREFPMQPIQASQFEDLFEDQLHLYDSDLEMVAQEQHDQDQIAAQVREANRAFTRA  663
             ARL        I  +Q E LFE++L  YD     + Q  H Q+++  ++ EAN  F + 
Sbjct  180  KARL--------IAPNQEEQLFEEELEKYDPLQNRLEQNLHKQEELLKEITEANNEFLQD  231

Query  664  HKGDAST-KEREKALQELENGYLKYKEIISNIEVGRKFYNDLAKIVGRFRDDCKAFVHQR  722
             + D+   ++RE+ALQ+LEN Y KYKE++SN++ G KFYNDL +I+ +     K FV+ R
Sbjct  232  KRVDSEKQRQREEALQKLENAYDKYKELVSNLQEGLKFYNDLTEILEKLLKKVKDFVNAR  291

Query  723  RME  725
            R E
Sbjct  292  RSE  294



Lambda      K        H        a         alpha
   0.317    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1060844846


Query= TCONS_00030038

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain bindin...  313     2e-106


>CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV. 
 The binding of the LYPxL motif of late HIV p6Gag and EIAV 
p9Gag to this domain is necessary for viral budding.This domain 
is generally central between an N-terminal Bro1 domain, 
pfam03097 and a C-terminal proline-rich domain. The retroviruses 
thus used this domain to hijack the ESCRT system of the 
cell.
Length=294

 Score = 313 bits (805),  Expect = 2e-106, Method: Composition-based stats.
 Identities = 123/303 (41%), Positives = 182/303 (60%), Gaps = 10/303 (3%)

Query  87   GLPPTLVAHAEEMRQQDGLHRLRRSLEDIAKVKANDKAVYNEGVELLAAEKAEDEASRRK  146
            GLPP+L   AEE+RQQ G+ RL +SL+D+ K+K  ++ + +E  +LL  E++EDE  R K
Sbjct  1    GLPPSLREKAEEVRQQGGIERLEKSLDDLPKLKQRNREILDEAEKLLDEEESEDEQLRAK  60

Query  147  YGTDRWTRQTSEAAAPKLYTTSSEISGYFTSAQSSDNLVEQKLRDSEAVFRVLTGTNRDL  206
            YGT RWTR  S      L     +       A  SD+ V  K R+ E    +L+G + DL
Sbjct  61   YGT-RWTRPPSSELTATLRAEIRKYREILEQASESDSQVRSKFREHEEDLELLSGPDEDL  119

Query  207  EMYVPSSRRAAIPPEVERELIRLRGCLSEVSRLESRRKRRAQALKEKARADDVTQALLKE  266
            E ++PSSRRA   P VE ++ +LR  L++++ L+  R++  + LKEKAR DD++  LL E
Sbjct  120  EAFLPSSRRAKNSPSVEEQVAKLRELLNKLNELKREREQLLKDLKEKARNDDISPKLLLE  179

Query  267  TARLEREFPMQPIQASQFEDLFEDQLHLYDSDLEMVAQEQHDQDQIAAQVREANRAFTRA  326
             ARL        I  +Q E LFE++L  YD     + Q  H Q+++  ++ EAN  F + 
Sbjct  180  KARL--------IAPNQEEQLFEEELEKYDPLQNRLEQNLHKQEELLKEITEANNEFLQD  231

Query  327  HKGDAST-KEREKALQELENGYLKYKEIISNIEVGRKFYNDLAKIVGRFRDDCKAFVHQR  385
             + D+   ++RE+ALQ+LEN Y KYKE++SN++ G KFYNDL +I+ +     K FV+ R
Sbjct  232  KRVDSEKQRQREEALQKLENAYDKYKELVSNLQEGLKFYNDLTEILEKLLKKVKDFVNAR  291

Query  386  RME  388
            R E
Sbjct  292  RSE  294



Lambda      K        H        a         alpha
   0.315    0.130    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00030039

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain bindin...  121     2e-34


>CDD:464053 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV. 
 The binding of the LYPxL motif of late HIV p6Gag and EIAV 
p9Gag to this domain is necessary for viral budding.This domain 
is generally central between an N-terminal Bro1 domain, 
pfam03097 and a C-terminal proline-rich domain. The retroviruses 
thus used this domain to hijack the ESCRT system of the 
cell.
Length=294

 Score = 121 bits (306),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 37/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query  1    MVAQEQHDQDQIAAQVREANRAFTRAHKGDAST-KEREKALQELENGYLKYKEIISNIEV  59
             + Q  H Q+++  ++ EAN  F +  + D+   ++RE+ALQ+LEN Y KYKE++SN++ 
Sbjct  206  RLEQNLHKQEELLKEITEANNEFLQDKRVDSEKQRQREEALQKLENAYDKYKELVSNLQE  265

Query  60   GRKFYNDLAKIVGRFRDDCKAFVHQRRME  88
            G KFYNDL +I+ +     K FV+ RR E
Sbjct  266  GLKFYNDLTEILEKLLKKVKDFVNARRSE  294



Lambda      K        H        a         alpha
   0.314    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00030040

Length=730
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  205     7e-62


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 205 bits (523),  Expect = 7e-62, Method: Composition-based stats.
 Identities = 91/242 (38%), Positives = 128/242 (53%), Gaps = 23/242 (10%)

Query  188  FISTTFPDVHAALPNLDILSVGSDAVEIRVDLLVEPSPQGVVSPVPSLRYVGQQVMLLRQ  247
             +  T   +   L  L+    G+D VE+RVDLL EP        V     V +Q+ LLR+
Sbjct  1    CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEP--------VEDAEDVSEQLALLRR  52

Query  248  HTELPIIFTTRCTKENGKFPMDDPMLFYRYLRRAIQWGCEYIDVELWLPEEIRRRLAEQK  307
              +LP+IFT R   E G+    +   +   LR A++ G +Y+DVEL+LPEEI + L E K
Sbjct  53   VGDLPLIFTFRTKSEGGEPDGSEE-EYLELLRLALRLGVDYVDVELFLPEEILKELIEAK  111

Query  308  --GHS-VIMSAFHDFSGTWKWTSPEAARIFAESARY-ADIVKMIAMVHTIEANYELEYFR  363
              G + VI S +HDF GT  W   E    + +     ADIVK+  M  +IE    L  F 
Sbjct  112  HEGGTKVIGS-YHDFEGTPSWE--ELISRYEKMQALGADIVKIAVMAKSIEDVLALLRFT  168

Query  364  STVKARGAGDSSPLLSAVNMGQMGQLSRALNTVF-SPITHPLL--PMIAAPGQLTAAEIN  420
            S +K+         L A++MG++G++SR L  +F SP+T   L     +APGQLTA E+ 
Sbjct  169  SEMKSLADKP----LIAMSMGELGRISRVLGPIFGSPVTFAALGLAEKSAPGQLTAKELR  224

Query  421  EA  422
            EA
Sbjct  225  EA  226



Lambda      K        H        a         alpha
   0.317    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 925476672


Query= TCONS_00030041

Length=730
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  205     7e-62


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 205 bits (523),  Expect = 7e-62, Method: Composition-based stats.
 Identities = 91/242 (38%), Positives = 128/242 (53%), Gaps = 23/242 (10%)

Query  188  FISTTFPDVHAALPNLDILSVGSDAVEIRVDLLVEPSPQGVVSPVPSLRYVGQQVMLLRQ  247
             +  T   +   L  L+    G+D VE+RVDLL EP        V     V +Q+ LLR+
Sbjct  1    CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEP--------VEDAEDVSEQLALLRR  52

Query  248  HTELPIIFTTRCTKENGKFPMDDPMLFYRYLRRAIQWGCEYIDVELWLPEEIRRRLAEQK  307
              +LP+IFT R   E G+    +   +   LR A++ G +Y+DVEL+LPEEI + L E K
Sbjct  53   VGDLPLIFTFRTKSEGGEPDGSEE-EYLELLRLALRLGVDYVDVELFLPEEILKELIEAK  111

Query  308  --GHS-VIMSAFHDFSGTWKWTSPEAARIFAESARY-ADIVKMIAMVHTIEANYELEYFR  363
              G + VI S +HDF GT  W   E    + +     ADIVK+  M  +IE    L  F 
Sbjct  112  HEGGTKVIGS-YHDFEGTPSWE--ELISRYEKMQALGADIVKIAVMAKSIEDVLALLRFT  168

Query  364  STVKARGAGDSSPLLSAVNMGQMGQLSRALNTVF-SPITHPLL--PMIAAPGQLTAAEIN  420
            S +K+         L A++MG++G++SR L  +F SP+T   L     +APGQLTA E+ 
Sbjct  169  SEMKSLADKP----LIAMSMGELGRISRVLGPIFGSPVTFAALGLAEKSAPGQLTAKELR  224

Query  421  EA  422
            EA
Sbjct  225  EA  226



Lambda      K        H        a         alpha
   0.317    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 925476672


Query= TCONS_00030042

Length=729
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type ...  205     6e-62


>CDD:426287 pfam01487, DHquinase_I, Type I 3-dehydroquinase.  Type I 3-dehydroquinase, 
(3-dehydroquinate dehydratase or DHQase.) catalyzes 
the cis-dehydration of 3-dehydroquinate via a covalent 
imine intermediate giving dehydroshikimate. Dehydroquinase 
functions in the shikimate pathway which is involved in the 
biosynthesis of aromatic amino acids. Type II 3-dehydroquinase 
catalyzes the trans-dehydration of 3-dehydroshikimate see 
pfam01220.
Length=227

 Score = 205 bits (524),  Expect = 6e-62, Method: Composition-based stats.
 Identities = 91/242 (38%), Positives = 128/242 (53%), Gaps = 23/242 (10%)

Query  188  FISTTFPDVHAALPNLDILSVGSDAVEIRVDLLVEPSPQGVVSPVPSLRYVGQQVMLLRQ  247
             +  T   +   L  L+    G+D VE+RVDLL EP        V     V +Q+ LLR+
Sbjct  1    CVPLTGKTLEEILEELESGKEGADLVELRVDLLEEP--------VEDAEDVSEQLALLRR  52

Query  248  HTELPIIFTTRCTKENGKFPMDDPMLFYRYLRRAIQWGCEYIDVELWLPEEIRRRLAEQK  307
              +LP+IFT R   E G+    +   +   LR A++ G +Y+DVEL+LPEEI + L E K
Sbjct  53   VGDLPLIFTFRTKSEGGEPDGSEE-EYLELLRLALRLGVDYVDVELFLPEEILKELIEAK  111

Query  308  --GHS-VIMSAFHDFSGTWKWTSPEAARIFAESARY-ADIVKMIAMVHTIEANYELEYFR  363
              G + VI S +HDF GT  W   E    + +     ADIVK+  M  +IE    L  F 
Sbjct  112  HEGGTKVIGS-YHDFEGTPSWE--ELISRYEKMQALGADIVKIAVMAKSIEDVLALLRFT  168

Query  364  STVKARGAGDSSPLLSAVNMGQMGQLSRALNTVF-SPITHPLL--PMIAAPGQLTAAEIN  420
            S +K+         L A++MG++G++SR L  +F SP+T   L     +APGQLTA E+ 
Sbjct  169  SEMKSLADKP----LIAMSMGELGRISRVLGPIFGSPVTFAALGLAEKSAPGQLTAKELR  224

Query  421  EA  422
            EA
Sbjct  225  EA  226



Lambda      K        H        a         alpha
   0.317    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 924021520


Query= TCONS_00030043

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460461 pfam02141, DENN, DENN (AEX-3) domain. DENN (after diff...  214     2e-68
CDD:460926 pfam03456, uDENN, uDENN domain. This region is always ...  75.3    9e-18


>CDD:460461 pfam02141, DENN, DENN (AEX-3) domain.  DENN (after differentially 
expressed in neoplastic vs normal cells) is a domain which 
occurs in several proteins involved in Rab- mediated processes 
or regulation of MAPK signalling pathways.
Length=186

 Score = 214 bits (548),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 82/201 (41%), Positives = 104/201 (52%), Gaps = 18/201 (9%)

Query  183  WIPRAYGILGREENMTSFWKEWLKAIIVPMTDGGVQRVPPSSPRMGVWQPLERYVMNLCT  242
             IP+AY I+ R      F K++L  +    T   +              P+ER++ NL  
Sbjct  1    RIPKAYCIISRLPFFNLF-KKFLDELYRRRTISPL------------PNPIERFIANLLY  47

Query  243  EAFSPNSSKTQVE--LAVRELRLFARKEAVNELPGSRNTDLYALFRTLSLSNIIILFEYA  300
            E   P   +TQ    L   E  L  R E  +ELP     DL+ LFR LS  NI+ LFE A
Sbjct  48   EVPFPPPGRTQKLKPLGGTEPILLQRPED-SELPLE-GVDLHLLFRCLSPENILQLFEAA  105

Query  301  LTESRIIFLSSHTSMLYLATRALVDLLFPLQWTGVLIPVLPARLIQALEAPCPYIVGIER  360
            L E RIIFLSS  + L L   A+V LL+P  W  + IPVLPA L+  L AP P+I+G+  
Sbjct  106  LLERRIIFLSSDLARLTLVAEAVVALLYPFVWQHIYIPVLPASLLDVLSAPTPFIIGVHS  165

Query  361  RYEK-VELPSDDFVLVDLDAD  380
            RY   +E P DD VLVDLD  
Sbjct  166  RYFDLLEDPLDDVVLVDLDTG  186


>CDD:460926 pfam03456, uDENN, uDENN domain.  This region is always found 
associated with pfam02141. It is predicted to form an all beta 
domain.
Length=59

 Score = 75.3 bits (186),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (12%)

Query  10  PVLLDRYPTKGMTEELKQRGTFPDYVPMFAFPNDINIVSSDQRPRSTWHGFTMTTDNGSR  69
           P +LDRYP              PD +PMF FP  +  +SS      T+  F +T ++GSR
Sbjct  1   PEVLDRYPEDDW-----SDPPLPDGIPMFCFPEGLETLSSR---EPTFFSFVLTDEDGSR  52

Query  70  LHAICVI  76
           L+  C+ 
Sbjct  53  LYGACLT  59



Lambda      K        H        a         alpha
   0.320    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 587408632


Query= TCONS_00034756

Length=775
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460461 pfam02141, DENN, DENN (AEX-3) domain. DENN (after diff...  220     9e-68
CDD:460926 pfam03456, uDENN, uDENN domain. This region is always ...  74.6    3e-17


>CDD:460461 pfam02141, DENN, DENN (AEX-3) domain.  DENN (after differentially 
expressed in neoplastic vs normal cells) is a domain which 
occurs in several proteins involved in Rab- mediated processes 
or regulation of MAPK signalling pathways.
Length=186

 Score = 220 bits (562),  Expect = 9e-68, Method: Composition-based stats.
 Identities = 82/201 (41%), Positives = 104/201 (52%), Gaps = 18/201 (9%)

Query  183  WIPRAYGILGREENMTSFWKEWLKAIIVPMTDGGVQRVPPSSPRMGVWQPLERYVMNLCT  242
             IP+AY I+ R      F K++L  +    T   +              P+ER++ NL  
Sbjct  1    RIPKAYCIISRLPFFNLF-KKFLDELYRRRTISPL------------PNPIERFIANLLY  47

Query  243  EAFSPNSSKTQVE--LAVRELRLFARKEAVNELPGSRNTDLYALFRTLSLSNIIILFEYA  300
            E   P   +TQ    L   E  L  R E  +ELP     DL+ LFR LS  NI+ LFE A
Sbjct  48   EVPFPPPGRTQKLKPLGGTEPILLQRPED-SELPLE-GVDLHLLFRCLSPENILQLFEAA  105

Query  301  LTESRIIFLSSHTSMLYLATRALVDLLFPLQWTGVLIPVLPARLIQALEAPCPYIVGIER  360
            L E RIIFLSS  + L L   A+V LL+P  W  + IPVLPA L+  L AP P+I+G+  
Sbjct  106  LLERRIIFLSSDLARLTLVAEAVVALLYPFVWQHIYIPVLPASLLDVLSAPTPFIIGVHS  165

Query  361  RYEK-VELPSDDFVLVDLDAD  380
            RY   +E P DD VLVDLD  
Sbjct  166  RYFDLLEDPLDDVVLVDLDTG  186


>CDD:460926 pfam03456, uDENN, uDENN domain.  This region is always found 
associated with pfam02141. It is predicted to form an all beta 
domain.
Length=59

 Score = 74.6 bits (184),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (12%)

Query  10  PVLLDRYPTKGMTEELKQRGTFPDYVPMFAFPNDINIVSSDQRPRSTWHGFTMTTDNGSR  69
           P +LDRYP              PD +PMF FP  +  +SS      T+  F +T ++GSR
Sbjct  1   PEVLDRYPEDDW-----SDPPLPDGIPMFCFPEGLETLSSR---EPTFFSFVLTDEDGSR  52

Query  70  LHAICVI  76
           L+  C+ 
Sbjct  53  LYGACLT  59



Lambda      K        H        a         alpha
   0.318    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 990958512


Query= TCONS_00034755

Length=744
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460461 pfam02141, DENN, DENN (AEX-3) domain. DENN (after diff...  218     2e-67
CDD:460926 pfam03456, uDENN, uDENN domain. This region is always ...  74.2    4e-17


>CDD:460461 pfam02141, DENN, DENN (AEX-3) domain.  DENN (after differentially 
expressed in neoplastic vs normal cells) is a domain which 
occurs in several proteins involved in Rab- mediated processes 
or regulation of MAPK signalling pathways.
Length=186

 Score = 218 bits (558),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 82/201 (41%), Positives = 104/201 (52%), Gaps = 18/201 (9%)

Query  183  WIPRAYGILGREENMTSFWKEWLKAIIVPMTDGGVQRVPPSSPRMGVWQPLERYVMNLCT  242
             IP+AY I+ R      F K++L  +    T   +              P+ER++ NL  
Sbjct  1    RIPKAYCIISRLPFFNLF-KKFLDELYRRRTISPL------------PNPIERFIANLLY  47

Query  243  EAFSPNSSKTQVE--LAVRELRLFARKEAVNELPGSRNTDLYALFRTLSLSNIIILFEYA  300
            E   P   +TQ    L   E  L  R E  +ELP     DL+ LFR LS  NI+ LFE A
Sbjct  48   EVPFPPPGRTQKLKPLGGTEPILLQRPED-SELPLE-GVDLHLLFRCLSPENILQLFEAA  105

Query  301  LTESRIIFLSSHTSMLYLATRALVDLLFPLQWTGVLIPVLPARLIQALEAPCPYIVGIER  360
            L E RIIFLSS  + L L   A+V LL+P  W  + IPVLPA L+  L AP P+I+G+  
Sbjct  106  LLERRIIFLSSDLARLTLVAEAVVALLYPFVWQHIYIPVLPASLLDVLSAPTPFIIGVHS  165

Query  361  RYEK-VELPSDDFVLVDLDAD  380
            RY   +E P DD VLVDLD  
Sbjct  166  RYFDLLEDPLDDVVLVDLDTG  186


>CDD:460926 pfam03456, uDENN, uDENN domain.  This region is always found 
associated with pfam02141. It is predicted to form an all beta 
domain.
Length=59

 Score = 74.2 bits (183),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (12%)

Query  10  PVLLDRYPTKGMTEELKQRGTFPDYVPMFAFPNDINIVSSDQRPRSTWHGFTMTTDNGSR  69
           P +LDRYP              PD +PMF FP  +  +SS      T+  F +T ++GSR
Sbjct  1   PEVLDRYPEDDW-----SDPPLPDGIPMFCFPEGLETLSSR---EPTFFSFVLTDEDGSR  52

Query  70  LHAICVI  76
           L+  C+ 
Sbjct  53  LYGACLT  59



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 945848800


Query= TCONS_00030044

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00030045

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain...  71.9    2e-15


>CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain.  MutL 
and MutS are key components of the DNA repair machinery that 
corrects replication errors. MutS recognizes mispaired or 
unpaired bases in a DNA duplex and in the presence of ATP, recruits 
MutL to form a DNA signaling complex for repair. The 
N terminal region of MutL contains the ATPase domain and the 
C terminal is involved in dimerization.
Length=145

 Score = 71.9 bits (177),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 51/193 (26%)

Query  446  IAQVDRKFILVKLADGRSSRSALVLIDQHAADERCRIESLFGAMFADGHRQVQSIRIDPI  505
            + QV   +IL +  DG      L LIDQHAA ER   E L     A+G    Q + I P+
Sbjct  4    LGQVHGTYILAENEDG------LYLIDQHAAHERILYEKLK-RALAEGGLAAQPLLI-PL  55

Query  506  TFDIPLMEAALFGKHADSFASWGVGYTVERKSSARAALVVVTSLPTLIAERCRLEPDLVS  565
              ++   EAAL  +H +  A   +G+ +E         V+V S+P L+ +  +   +L+ 
Sbjct  56   VLELSPEEAALLEEHKEELAQ--LGFELEEFGPNS---VIVRSVPALLRQ--QNLQELIR  108

Query  566  DMIRGEIWKHEENGQGALALSDQRAQRSKVHRDELGVETEGNWVDRLTSCPQGIIDLLNS  625
            +++                L+++     +   +E                      LL +
Sbjct  109  ELLDE--------------LAEKGGSSLEESLEE----------------------LLAT  132

Query  626  RACRTAIMFNDML  638
             AC +A+     L
Sbjct  133  MACHSAVRAGRRL  145



Lambda      K        H        a         alpha
   0.317    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00034757

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00034758

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain...  71.1    3e-15


>CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain.  MutL 
and MutS are key components of the DNA repair machinery that 
corrects replication errors. MutS recognizes mispaired or 
unpaired bases in a DNA duplex and in the presence of ATP, recruits 
MutL to form a DNA signaling complex for repair. The 
N terminal region of MutL contains the ATPase domain and the 
C terminal is involved in dimerization.
Length=145

 Score = 71.1 bits (175),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 51/193 (26%)

Query  323  IAQVDRKFILVKLADGRSSRSALVLIDQHAADERCRIESLFGAMFADGHRQVQSIRIDPI  382
            + QV   +IL +  DG      L LIDQHAA ER   E L     A+G    Q + I P+
Sbjct  4    LGQVHGTYILAENEDG------LYLIDQHAAHERILYEKLK-RALAEGGLAAQPLLI-PL  55

Query  383  TFDIPLMEAALFGKHADSFASWGVGYTVERKSSARAALVVVTSLPTLIAERCRLEPDLVS  442
              ++   EAAL  +H +  A   +G+ +E         V+V S+P L+ +  +   +L+ 
Sbjct  56   VLELSPEEAALLEEHKEELAQ--LGFELEEFGPNS---VIVRSVPALLRQ--QNLQELIR  108

Query  443  DMIRGEIWKHEENGQGALALSDQRAQRSKVHRDELGVETEGNWVDRLTSCPQGIIDLLNS  502
            +++                L+++     +   +E                      LL +
Sbjct  109  ELLDE--------------LAEKGGSSLEESLEE----------------------LLAT  132

Query  503  RACRTAIMFNDML  515
             AC +A+     L
Sbjct  133  MACHSAVRAGRRL  145



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 744225144


Query= TCONS_00030047

Length=766
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain...  71.1    4e-15


>CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain.  MutL 
and MutS are key components of the DNA repair machinery that 
corrects replication errors. MutS recognizes mispaired or 
unpaired bases in a DNA duplex and in the presence of ATP, recruits 
MutL to form a DNA signaling complex for repair. The 
N terminal region of MutL contains the ATPase domain and the 
C terminal is involved in dimerization.
Length=145

 Score = 71.1 bits (175),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 51/193 (26%)

Query  499  IAQVDRKFILVKLADGRSSRSALVLIDQHAADERCRIESLFGAMFADGHRQVQSIRIDPI  558
            + QV   +IL +  DG      L LIDQHAA ER   E L     A+G    Q + I P+
Sbjct  4    LGQVHGTYILAENEDG------LYLIDQHAAHERILYEKLK-RALAEGGLAAQPLLI-PL  55

Query  559  TFDIPLMEAALFGKHADSFASWGVGYTVERKSSARAALVVVTSLPTLIAERCRLEPDLVS  618
              ++   EAAL  +H +  A   +G+ +E         V+V S+P L+ +  +   +L+ 
Sbjct  56   VLELSPEEAALLEEHKEELAQ--LGFELEEFGPNS---VIVRSVPALLRQ--QNLQELIR  108

Query  619  DMIRGEIWKHEENGQGALALSDQRAQRSKVHRDELGVETEGNWVDRLTSCPQGIIDLLNS  678
            +++                L+++     +   +E                      LL +
Sbjct  109  ELLDE--------------LAEKGGSSLEESLEE----------------------LLAT  132

Query  679  RACRTAIMFNDML  691
             AC +A+     L
Sbjct  133  MACHSAVRAGRRL  145



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 977862144


Query= TCONS_00034759

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain...  71.1    3e-15


>CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain.  MutL 
and MutS are key components of the DNA repair machinery that 
corrects replication errors. MutS recognizes mispaired or 
unpaired bases in a DNA duplex and in the presence of ATP, recruits 
MutL to form a DNA signaling complex for repair. The 
N terminal region of MutL contains the ATPase domain and the 
C terminal is involved in dimerization.
Length=145

 Score = 71.1 bits (175),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 51/193 (26%)

Query  323  IAQVDRKFILVKLADGRSSRSALVLIDQHAADERCRIESLFGAMFADGHRQVQSIRIDPI  382
            + QV   +IL +  DG      L LIDQHAA ER   E L     A+G    Q + I P+
Sbjct  4    LGQVHGTYILAENEDG------LYLIDQHAAHERILYEKLK-RALAEGGLAAQPLLI-PL  55

Query  383  TFDIPLMEAALFGKHADSFASWGVGYTVERKSSARAALVVVTSLPTLIAERCRLEPDLVS  442
              ++   EAAL  +H +  A   +G+ +E         V+V S+P L+ +  +   +L+ 
Sbjct  56   VLELSPEEAALLEEHKEELAQ--LGFELEEFGPNS---VIVRSVPALLRQ--QNLQELIR  108

Query  443  DMIRGEIWKHEENGQGALALSDQRAQRSKVHRDELGVETEGNWVDRLTSCPQGIIDLLNS  502
            +++                L+++     +   +E                      LL +
Sbjct  109  ELLDE--------------LAEKGGSSLEESLEE----------------------LLAT  132

Query  503  RACRTAIMFNDML  515
             AC +A+     L
Sbjct  133  MACHSAVRAGRRL  145



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0732    0.140     1.90     42.6     43.6 

Effective search space used: 744225144


Query= TCONS_00030046

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain...  71.1    3e-15


>CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain.  MutL 
and MutS are key components of the DNA repair machinery that 
corrects replication errors. MutS recognizes mispaired or 
unpaired bases in a DNA duplex and in the presence of ATP, recruits 
MutL to form a DNA signaling complex for repair. The 
N terminal region of MutL contains the ATPase domain and the 
C terminal is involved in dimerization.
Length=145

 Score = 71.1 bits (175),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 51/193 (26%)

Query  323  IAQVDRKFILVKLADGRSSRSALVLIDQHAADERCRIESLFGAMFADGHRQVQSIRIDPI  382
            + QV   +IL +  DG      L LIDQHAA ER   E L     A+G    Q + I P+
Sbjct  4    LGQVHGTYILAENEDG------LYLIDQHAAHERILYEKLK-RALAEGGLAAQPLLI-PL  55

Query  383  TFDIPLMEAALFGKHADSFASWGVGYTVERKSSARAALVVVTSLPTLIAERCRLEPDLVS  442
              ++   EAAL  +H +  A   +G+ +E         V+V S+P L+ +  +   +L+ 
Sbjct  56   VLELSPEEAALLEEHKEELAQ--LGFELEEFGPNS---VIVRSVPALLRQ--QNLQELIR  108

Query  443  DMIRGEIWKHEENGQGALALSDQRAQRSKVHRDELGVETEGNWVDRLTSCPQGIIDLLNS  502
            +++                L+++     +   +E                      LL +
Sbjct  109  ELLDE--------------LAEKGGSSLEESLEE----------------------LLAT  132

Query  503  RACRTAIMFNDML  515
             AC +A+     L
Sbjct  133  MACHSAVRAGRRL  145



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 744225144


Query= TCONS_00034760

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00034761

Length=766
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain...  71.1    4e-15


>CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain.  MutL 
and MutS are key components of the DNA repair machinery that 
corrects replication errors. MutS recognizes mispaired or 
unpaired bases in a DNA duplex and in the presence of ATP, recruits 
MutL to form a DNA signaling complex for repair. The 
N terminal region of MutL contains the ATPase domain and the 
C terminal is involved in dimerization.
Length=145

 Score = 71.1 bits (175),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 51/193 (26%)

Query  499  IAQVDRKFILVKLADGRSSRSALVLIDQHAADERCRIESLFGAMFADGHRQVQSIRIDPI  558
            + QV   +IL +  DG      L LIDQHAA ER   E L     A+G    Q + I P+
Sbjct  4    LGQVHGTYILAENEDG------LYLIDQHAAHERILYEKLK-RALAEGGLAAQPLLI-PL  55

Query  559  TFDIPLMEAALFGKHADSFASWGVGYTVERKSSARAALVVVTSLPTLIAERCRLEPDLVS  618
              ++   EAAL  +H +  A   +G+ +E         V+V S+P L+ +  +   +L+ 
Sbjct  56   VLELSPEEAALLEEHKEELAQ--LGFELEEFGPNS---VIVRSVPALLRQ--QNLQELIR  108

Query  619  DMIRGEIWKHEENGQGALALSDQRAQRSKVHRDELGVETEGNWVDRLTSCPQGIIDLLNS  678
            +++                L+++     +   +E                      LL +
Sbjct  109  ELLDE--------------LAEKGGSSLEESLEE----------------------LLAT  132

Query  679  RACRTAIMFNDML  691
             AC +A+     L
Sbjct  133  MACHSAVRAGRRL  145



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 977862144


Query= TCONS_00030048

Length=766
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain...  71.1    4e-15


>CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain.  MutL 
and MutS are key components of the DNA repair machinery that 
corrects replication errors. MutS recognizes mispaired or 
unpaired bases in a DNA duplex and in the presence of ATP, recruits 
MutL to form a DNA signaling complex for repair. The 
N terminal region of MutL contains the ATPase domain and the 
C terminal is involved in dimerization.
Length=145

 Score = 71.1 bits (175),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 51/193 (26%)

Query  499  IAQVDRKFILVKLADGRSSRSALVLIDQHAADERCRIESLFGAMFADGHRQVQSIRIDPI  558
            + QV   +IL +  DG      L LIDQHAA ER   E L     A+G    Q + I P+
Sbjct  4    LGQVHGTYILAENEDG------LYLIDQHAAHERILYEKLK-RALAEGGLAAQPLLI-PL  55

Query  559  TFDIPLMEAALFGKHADSFASWGVGYTVERKSSARAALVVVTSLPTLIAERCRLEPDLVS  618
              ++   EAAL  +H +  A   +G+ +E         V+V S+P L+ +  +   +L+ 
Sbjct  56   VLELSPEEAALLEEHKEELAQ--LGFELEEFGPNS---VIVRSVPALLRQ--QNLQELIR  108

Query  619  DMIRGEIWKHEENGQGALALSDQRAQRSKVHRDELGVETEGNWVDRLTSCPQGIIDLLNS  678
            +++                L+++     +   +E                      LL +
Sbjct  109  ELLDE--------------LAEKGGSSLEESLEE----------------------LLAT  132

Query  679  RACRTAIMFNDML  691
             AC +A+     L
Sbjct  133  MACHSAVRAGRRL  145



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 977862144


Query= TCONS_00030051

Length=766
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain...  71.1    4e-15


>CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain.  MutL 
and MutS are key components of the DNA repair machinery that 
corrects replication errors. MutS recognizes mispaired or 
unpaired bases in a DNA duplex and in the presence of ATP, recruits 
MutL to form a DNA signaling complex for repair. The 
N terminal region of MutL contains the ATPase domain and the 
C terminal is involved in dimerization.
Length=145

 Score = 71.1 bits (175),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 51/193 (26%)

Query  499  IAQVDRKFILVKLADGRSSRSALVLIDQHAADERCRIESLFGAMFADGHRQVQSIRIDPI  558
            + QV   +IL +  DG      L LIDQHAA ER   E L     A+G    Q + I P+
Sbjct  4    LGQVHGTYILAENEDG------LYLIDQHAAHERILYEKLK-RALAEGGLAAQPLLI-PL  55

Query  559  TFDIPLMEAALFGKHADSFASWGVGYTVERKSSARAALVVVTSLPTLIAERCRLEPDLVS  618
              ++   EAAL  +H +  A   +G+ +E         V+V S+P L+ +  +   +L+ 
Sbjct  56   VLELSPEEAALLEEHKEELAQ--LGFELEEFGPNS---VIVRSVPALLRQ--QNLQELIR  108

Query  619  DMIRGEIWKHEENGQGALALSDQRAQRSKVHRDELGVETEGNWVDRLTSCPQGIIDLLNS  678
            +++                L+++     +   +E                      LL +
Sbjct  109  ELLDE--------------LAEKGGSSLEESLEE----------------------LLAT  132

Query  679  RACRTAIMFNDML  691
             AC +A+     L
Sbjct  133  MACHSAVRAGRRL  145



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 977862144


Query= TCONS_00034762

Length=766
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain...  71.1    4e-15


>CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain.  MutL 
and MutS are key components of the DNA repair machinery that 
corrects replication errors. MutS recognizes mispaired or 
unpaired bases in a DNA duplex and in the presence of ATP, recruits 
MutL to form a DNA signaling complex for repair. The 
N terminal region of MutL contains the ATPase domain and the 
C terminal is involved in dimerization.
Length=145

 Score = 71.1 bits (175),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 51/193 (26%)

Query  499  IAQVDRKFILVKLADGRSSRSALVLIDQHAADERCRIESLFGAMFADGHRQVQSIRIDPI  558
            + QV   +IL +  DG      L LIDQHAA ER   E L     A+G    Q + I P+
Sbjct  4    LGQVHGTYILAENEDG------LYLIDQHAAHERILYEKLK-RALAEGGLAAQPLLI-PL  55

Query  559  TFDIPLMEAALFGKHADSFASWGVGYTVERKSSARAALVVVTSLPTLIAERCRLEPDLVS  618
              ++   EAAL  +H +  A   +G+ +E         V+V S+P L+ +  +   +L+ 
Sbjct  56   VLELSPEEAALLEEHKEELAQ--LGFELEEFGPNS---VIVRSVPALLRQ--QNLQELIR  108

Query  619  DMIRGEIWKHEENGQGALALSDQRAQRSKVHRDELGVETEGNWVDRLTSCPQGIIDLLNS  678
            +++                L+++     +   +E                      LL +
Sbjct  109  ELLDE--------------LAEKGGSSLEESLEE----------------------LLAT  132

Query  679  RACRTAIMFNDML  691
             AC +A+     L
Sbjct  133  MACHSAVRAGRRL  145



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 977862144


Query= TCONS_00030049

Length=766
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain...  71.1    4e-15


>CDD:430147 pfam08676, MutL_C, MutL C terminal dimerization domain.  MutL 
and MutS are key components of the DNA repair machinery that 
corrects replication errors. MutS recognizes mispaired or 
unpaired bases in a DNA duplex and in the presence of ATP, recruits 
MutL to form a DNA signaling complex for repair. The 
N terminal region of MutL contains the ATPase domain and the 
C terminal is involved in dimerization.
Length=145

 Score = 71.1 bits (175),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 51/193 (26%)

Query  499  IAQVDRKFILVKLADGRSSRSALVLIDQHAADERCRIESLFGAMFADGHRQVQSIRIDPI  558
            + QV   +IL +  DG      L LIDQHAA ER   E L     A+G    Q + I P+
Sbjct  4    LGQVHGTYILAENEDG------LYLIDQHAAHERILYEKLK-RALAEGGLAAQPLLI-PL  55

Query  559  TFDIPLMEAALFGKHADSFASWGVGYTVERKSSARAALVVVTSLPTLIAERCRLEPDLVS  618
              ++   EAAL  +H +  A   +G+ +E         V+V S+P L+ +  +   +L+ 
Sbjct  56   VLELSPEEAALLEEHKEELAQ--LGFELEEFGPNS---VIVRSVPALLRQ--QNLQELIR  108

Query  619  DMIRGEIWKHEENGQGALALSDQRAQRSKVHRDELGVETEGNWVDRLTSCPQGIIDLLNS  678
            +++                L+++     +   +E                      LL +
Sbjct  109  ELLDE--------------LAEKGGSSLEESLEE----------------------LLAT  132

Query  679  RACRTAIMFNDML  691
             AC +A+     L
Sbjct  133  MACHSAVRAGRRL  145



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 977862144


Query= TCONS_00030050

Length=273


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00030052

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396255 pfam01593, Amino_oxidase, Flavin containing amine oxid...  62.9    2e-11


>CDD:396255 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase. 
 This family consists of various amine oxidases, including 
maze polyamine oxidase (PAO) and various flavin containing 
monoamine oxidases (MAO). The aligned region includes the 
flavin binding site of these enzymes. The family also contains 
phytoene dehydrogenases and related enzymes. In vertebrates 
MAO plays an important role regulating the intracellular 
levels of amines via there oxidation; these include various 
neurotransmitters, neurotoxins and trace amines. In lower eukaryotes 
such as aspergillus and in bacteria the main role 
of amine oxidases is to provide a source of ammonium. PAOs in 
plants, bacteria and protozoa oxidase spermidine and spermine 
to an aminobutyral, diaminopropane and hydrogen peroxide 
and are involved in the catabolism of polyamines. Other members 
of this family include tryptophan 2-monooxygenase, putrescine 
oxidase, corticosteroid binding proteins and antibacterial 
glycoproteins.
Length=446

 Score = 62.9 bits (153),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 60/307 (20%), Positives = 100/307 (33%), Gaps = 48/307 (16%)

Query  108  LERIRLPQYFSRRYLLPLLSSMTTCSHAELLDFPAIDVVDYATRTYRQPHYTVVGGVHRV  167
             +R+  P+ F+    LP  S       +EL    A+ ++ +A            GG+  +
Sbjct  153  WDRLIDPELFAA---LPFASGAFAGDPSELSAGLALPLL-WALLGEGGSLLLPRGGLGAL  208

Query  168  QARISD---GLAIRLHSTVTAVEAAGTRCRITWIDSQNDKVSSAEYDHVIMAVTPDVVAA  224
               ++    G  +RL++ V +++  G    +T  D         E D VI+ V   V+  
Sbjct  209  PDALAAQLLGGDVRLNTRVRSIDREGDGVTVTLTDG-----EVIEADAVIVTVPLGVLKR  263

Query  225  I-FKP--LEKPLRSI------PTVKGDCIVHCDTSILPDGGLLCTEAKKALEPPEIMYMV  275
            I F P    +  R+I      P  K    +  D    PD GLL   ++           +
Sbjct  264  ILFTPPLPPEKARAIRNLGYGPVNK--VHLEFDRKFWPDLGLLGLLSELLTGLGTAFSWL  321

Query  276  SDNNSTESVHIHRSSVMVTN---FPIEPINSNKIIHRARLTRVLR------------TVR  320
            +  N           V V            S++ +    + R LR             + 
Sbjct  322  TFPNRAPPGKGLLLLVYVGPGDRARELEGLSDEEL-LQAVLRDLRKLFGEEAPEPLRVLV  380

Query  321  SREVVNRIFSASQSQNTL----SEKEQLWRNGDGNVWLVGAWC---WDGMVLLEGCIVSA  373
            S    +     S S         +   L R  D  ++  G      + G V  EG I S 
Sbjct  381  SDWHTDPWPRGSYSLPQYGPGHDDYRPLARTPDPGLFFAGEHTSTGYPGTV--EGAIESG  438

Query  374  MRVAACL  380
             R A  +
Sbjct  439  RRAARAV  445



Lambda      K        H        a         alpha
   0.323    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00030053

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00030054

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462244 pfam07716, bZIP_2, Basic region leucine zipper             58.4    1e-12


>CDD:462244 pfam07716, bZIP_2, Basic region leucine zipper.  
Length=51

 Score = 58.4 bits (142),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 23/48 (48%), Positives = 31/48 (65%), Gaps = 0/48 (0%)

Query  99   DKRRRNTAASARFRVKKKLREQALEKTVKETTEKNAALEARVTALELE  146
            D+RR+N  A+ R R KKK +E+ LE+ VKE   +NA L  +V  LE E
Sbjct  4    DRRRKNNEAAKRSREKKKQKEEELEERVKELERENAQLRQKVEQLEKE  51



Lambda      K        H        a         alpha
   0.302    0.115    0.299    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00030055

Length=424


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.120    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00030056

Length=447


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.120    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 547532328


Query= TCONS_00030057

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462244 pfam07716, bZIP_2, Basic region leucine zipper             58.4    1e-12


>CDD:462244 pfam07716, bZIP_2, Basic region leucine zipper.  
Length=51

 Score = 58.4 bits (142),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 23/48 (48%), Positives = 31/48 (65%), Gaps = 0/48 (0%)

Query  99   DKRRRNTAASARFRVKKKLREQALEKTVKETTEKNAALEARVTALELE  146
            D+RR+N  A+ R R KKK +E+ LE+ VKE   +NA L  +V  LE E
Sbjct  4    DRRRKNNEAAKRSREKKKQKEEELEERVKELERENAQLRQKVEQLEKE  51



Lambda      K        H        a         alpha
   0.302    0.115    0.299    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00034763

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462244 pfam07716, bZIP_2, Basic region leucine zipper             58.4    1e-12


>CDD:462244 pfam07716, bZIP_2, Basic region leucine zipper.  
Length=51

 Score = 58.4 bits (142),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 23/48 (48%), Positives = 31/48 (65%), Gaps = 0/48 (0%)

Query  99   DKRRRNTAASARFRVKKKLREQALEKTVKETTEKNAALEARVTALELE  146
            D+RR+N  A+ R R KKK +E+ LE+ VKE   +NA L  +V  LE E
Sbjct  4    DRRRKNNEAAKRSREKKKQKEEELEERVKELERENAQLRQKVEQLEKE  51



Lambda      K        H        a         alpha
   0.302    0.115    0.299    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00034764

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.122    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00034765

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462244 pfam07716, bZIP_2, Basic region leucine zipper             62.2    7e-14


>CDD:462244 pfam07716, bZIP_2, Basic region leucine zipper.  
Length=51

 Score = 62.2 bits (152),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 23/48 (48%), Positives = 31/48 (65%), Gaps = 0/48 (0%)

Query  133  DKRRRNTAASARFRVKKKLREQALEKTVKETTEKNAALEARVTALELE  180
            D+RR+N  A+ R R KKK +E+ LE+ VKE   +NA L  +V  LE E
Sbjct  4    DRRRKNNEAAKRSREKKKQKEEELEERVKELERENAQLRQKVEQLEKE  51



Lambda      K        H        a         alpha
   0.306    0.119    0.321    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00030058

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.142    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00030059

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.147    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00030060

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00030061

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00030062

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398764 pfam05238, CENP-N, Kinetochore protein CHL4 like. CHL4...  479     9e-169


>CDD:398764 pfam05238, CENP-N, Kinetochore protein CHL4 like.  CHL4 is a 
protein involved in chromosome segregation. It is a component 
of the central kinetochore which mediates the attachment of 
the centromere to the mitotic spindle. CENP-N is one of the 
components that assembles onto the CENP-A-nucleosome-associated 
(NAC) centromere. The centromere, which is the basic element 
of chromosome inheritance, is epigenetically determined 
in mammals. CENP-A, the centromere-specific histone H3 variant, 
assembles an array of nucleosomes and it is this that 
seems to be the prime candidate for specifying centromere identity. 
CENP-A nucleosomes directly recruit a proximal CENP-A 
nucleosome associated complex (NAC) comprised of CENP-M, 
CENP-N and CENP-T, CENP-U(50), CENP-C and CENP-H. Assembly of 
the CENP-A NAC at centromeres is dependent on CENP-M, CENP-N 
and CENP-T. Additionally, there are seven other subunits 
which make up the CENP-A-nucleosome distal (CAD) centromere, 
CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and CENP-S, 
also assembling on the CENP-A NAC.
Length=403

 Score = 479 bits (1234),  Expect = 9e-169, Method: Composition-based stats.
 Identities = 191/443 (43%), Positives = 254/443 (57%), Gaps = 42/443 (9%)

Query  23   SSTSSLIKSFSRLSRHALLDLVFQWLDDRNAQLFPPYLQKDEIENPADDKLSPYPAAETI  82
            S+T  L +   RL R +LLDL+ +WLD RN Q          I++  D+    +    T+
Sbjct  1    STTPVLRRILLRLPRSSLLDLLQKWLDKRNTQP---------IDDGDDEDEDGFLPERTL  51

Query  83   EDVRNAYQDLQDRKGGKREVIDRILEGDWRHGITLRQLAMVDIRYMEDHPASLRWTAFEL  142
            + +R  YQ+LQ  KG KREVIDRILEGDW HG+ L QLA +DI+Y+ DHP SLRWTA +L
Sbjct  52   QTLRELYQELQ--KGPKREVIDRILEGDWPHGLNLYQLAQLDIQYLVDHPNSLRWTASQL  109

Query  143  SRIGMDGTQSAGATTPDVSACLPRIHATTFLSNLQQQISPLVKAHYHLVRSSSLPLSFLR  202
            S               D    +PR+  +TFLSNLQ+Q+SPL KAHY+L R   LPL  +R
Sbjct  110  SDS-------------DGKEVIPRLDPSTFLSNLQEQLSPLYKAHYYLFRHPELPLIIIR  156

Query  203  ILVTSSPYQNPRQPPEALMDSSRVMYVAFPDSCPFIYTSIATSPVAKSNTTTNHAVATDA  262
            I +  SPY  P Q PE L+DSS+  YVAFPD+ P+++ S             +H+ ATD 
Sbjct  157  IQLFDSPYSTPNQAPEPLLDSSKPFYVAFPDNSPYVFIS-------------SHSPATDP  203

Query  263  RSLQRIVRDALPKALSRPQERYALKATSLTAKNLQALLALRGPGRSNVAHGAFSIFADAV  322
              LQ +V  A+P+ALSR  +R  LK TSL  ++L ALLALRGP R N A GA+SI+ADA 
Sbjct  204  LLLQALVLQAVPRALSR-SKRIQLKPTSLPTRSLDALLALRGPSRYNQAMGAWSIYADAS  262

Query  323  LEGSPLDPRPSDTISPREHFYQDLDKEN-ENQEDGNTSKETEPSSHVAKKRKLAVHSRFG  381
            +EGSPL P P   I+P +      DK+        +        +     RKL    RFG
Sbjct  263  VEGSPLGPPPKHPIAPGKRKGDHEDKDPGSGSGVDSRIIYENKRTKERVHRKLTAQERFG  322

Query  382  TTGTLSSAPLDRLDVRLLDPADDEDDEHEVDHTQP-SVSLTFVGSDVISGIRKLAELGVV  440
            T    S  PL+R++  L DP   +   +  D  +P  + L F G DV +G+R+LA+ G++
Sbjct  323  T--YDSLPPLERVEYTLEDPFKSDSGGYNSDRKEPFRIKLKFSGPDVFAGLRELADAGII  380

Query  441  DPERMPSWMTGEEAVSVAVVHRG  463
            DP +MP W+TGEE VS   V  G
Sbjct  381  DPPKMPGWLTGEEGVSSGKVRDG  403



Lambda      K        H        a         alpha
   0.316    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00034767

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398764 pfam05238, CENP-N, Kinetochore protein CHL4 like. CHL4...  479     9e-169


>CDD:398764 pfam05238, CENP-N, Kinetochore protein CHL4 like.  CHL4 is a 
protein involved in chromosome segregation. It is a component 
of the central kinetochore which mediates the attachment of 
the centromere to the mitotic spindle. CENP-N is one of the 
components that assembles onto the CENP-A-nucleosome-associated 
(NAC) centromere. The centromere, which is the basic element 
of chromosome inheritance, is epigenetically determined 
in mammals. CENP-A, the centromere-specific histone H3 variant, 
assembles an array of nucleosomes and it is this that 
seems to be the prime candidate for specifying centromere identity. 
CENP-A nucleosomes directly recruit a proximal CENP-A 
nucleosome associated complex (NAC) comprised of CENP-M, 
CENP-N and CENP-T, CENP-U(50), CENP-C and CENP-H. Assembly of 
the CENP-A NAC at centromeres is dependent on CENP-M, CENP-N 
and CENP-T. Additionally, there are seven other subunits 
which make up the CENP-A-nucleosome distal (CAD) centromere, 
CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and CENP-S, 
also assembling on the CENP-A NAC.
Length=403

 Score = 479 bits (1234),  Expect = 9e-169, Method: Composition-based stats.
 Identities = 191/443 (43%), Positives = 254/443 (57%), Gaps = 42/443 (9%)

Query  23   SSTSSLIKSFSRLSRHALLDLVFQWLDDRNAQLFPPYLQKDEIENPADDKLSPYPAAETI  82
            S+T  L +   RL R +LLDL+ +WLD RN Q          I++  D+    +    T+
Sbjct  1    STTPVLRRILLRLPRSSLLDLLQKWLDKRNTQP---------IDDGDDEDEDGFLPERTL  51

Query  83   EDVRNAYQDLQDRKGGKREVIDRILEGDWRHGITLRQLAMVDIRYMEDHPASLRWTAFEL  142
            + +R  YQ+LQ  KG KREVIDRILEGDW HG+ L QLA +DI+Y+ DHP SLRWTA +L
Sbjct  52   QTLRELYQELQ--KGPKREVIDRILEGDWPHGLNLYQLAQLDIQYLVDHPNSLRWTASQL  109

Query  143  SRIGMDGTQSAGATTPDVSACLPRIHATTFLSNLQQQISPLVKAHYHLVRSSSLPLSFLR  202
            S               D    +PR+  +TFLSNLQ+Q+SPL KAHY+L R   LPL  +R
Sbjct  110  SDS-------------DGKEVIPRLDPSTFLSNLQEQLSPLYKAHYYLFRHPELPLIIIR  156

Query  203  ILVTSSPYQNPRQPPEALMDSSRVMYVAFPDSCPFIYTSIATSPVAKSNTTTNHAVATDA  262
            I +  SPY  P Q PE L+DSS+  YVAFPD+ P+++ S             +H+ ATD 
Sbjct  157  IQLFDSPYSTPNQAPEPLLDSSKPFYVAFPDNSPYVFIS-------------SHSPATDP  203

Query  263  RSLQRIVRDALPKALSRPQERYALKATSLTAKNLQALLALRGPGRSNVAHGAFSIFADAV  322
              LQ +V  A+P+ALSR  +R  LK TSL  ++L ALLALRGP R N A GA+SI+ADA 
Sbjct  204  LLLQALVLQAVPRALSR-SKRIQLKPTSLPTRSLDALLALRGPSRYNQAMGAWSIYADAS  262

Query  323  LEGSPLDPRPSDTISPREHFYQDLDKEN-ENQEDGNTSKETEPSSHVAKKRKLAVHSRFG  381
            +EGSPL P P   I+P +      DK+        +        +     RKL    RFG
Sbjct  263  VEGSPLGPPPKHPIAPGKRKGDHEDKDPGSGSGVDSRIIYENKRTKERVHRKLTAQERFG  322

Query  382  TTGTLSSAPLDRLDVRLLDPADDEDDEHEVDHTQP-SVSLTFVGSDVISGIRKLAELGVV  440
            T    S  PL+R++  L DP   +   +  D  +P  + L F G DV +G+R+LA+ G++
Sbjct  323  T--YDSLPPLERVEYTLEDPFKSDSGGYNSDRKEPFRIKLKFSGPDVFAGLRELADAGII  380

Query  441  DPERMPSWMTGEEAVSVAVVHRG  463
            DP +MP W+TGEE VS   V  G
Sbjct  381  DPPKMPGWLTGEEGVSSGKVRDG  403



Lambda      K        H        a         alpha
   0.316    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00034766

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398764 pfam05238, CENP-N, Kinetochore protein CHL4 like. CHL4...  479     9e-169


>CDD:398764 pfam05238, CENP-N, Kinetochore protein CHL4 like.  CHL4 is a 
protein involved in chromosome segregation. It is a component 
of the central kinetochore which mediates the attachment of 
the centromere to the mitotic spindle. CENP-N is one of the 
components that assembles onto the CENP-A-nucleosome-associated 
(NAC) centromere. The centromere, which is the basic element 
of chromosome inheritance, is epigenetically determined 
in mammals. CENP-A, the centromere-specific histone H3 variant, 
assembles an array of nucleosomes and it is this that 
seems to be the prime candidate for specifying centromere identity. 
CENP-A nucleosomes directly recruit a proximal CENP-A 
nucleosome associated complex (NAC) comprised of CENP-M, 
CENP-N and CENP-T, CENP-U(50), CENP-C and CENP-H. Assembly of 
the CENP-A NAC at centromeres is dependent on CENP-M, CENP-N 
and CENP-T. Additionally, there are seven other subunits 
which make up the CENP-A-nucleosome distal (CAD) centromere, 
CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and CENP-S, 
also assembling on the CENP-A NAC.
Length=403

 Score = 479 bits (1234),  Expect = 9e-169, Method: Composition-based stats.
 Identities = 191/443 (43%), Positives = 254/443 (57%), Gaps = 42/443 (9%)

Query  23   SSTSSLIKSFSRLSRHALLDLVFQWLDDRNAQLFPPYLQKDEIENPADDKLSPYPAAETI  82
            S+T  L +   RL R +LLDL+ +WLD RN Q          I++  D+    +    T+
Sbjct  1    STTPVLRRILLRLPRSSLLDLLQKWLDKRNTQP---------IDDGDDEDEDGFLPERTL  51

Query  83   EDVRNAYQDLQDRKGGKREVIDRILEGDWRHGITLRQLAMVDIRYMEDHPASLRWTAFEL  142
            + +R  YQ+LQ  KG KREVIDRILEGDW HG+ L QLA +DI+Y+ DHP SLRWTA +L
Sbjct  52   QTLRELYQELQ--KGPKREVIDRILEGDWPHGLNLYQLAQLDIQYLVDHPNSLRWTASQL  109

Query  143  SRIGMDGTQSAGATTPDVSACLPRIHATTFLSNLQQQISPLVKAHYHLVRSSSLPLSFLR  202
            S               D    +PR+  +TFLSNLQ+Q+SPL KAHY+L R   LPL  +R
Sbjct  110  SDS-------------DGKEVIPRLDPSTFLSNLQEQLSPLYKAHYYLFRHPELPLIIIR  156

Query  203  ILVTSSPYQNPRQPPEALMDSSRVMYVAFPDSCPFIYTSIATSPVAKSNTTTNHAVATDA  262
            I +  SPY  P Q PE L+DSS+  YVAFPD+ P+++ S             +H+ ATD 
Sbjct  157  IQLFDSPYSTPNQAPEPLLDSSKPFYVAFPDNSPYVFIS-------------SHSPATDP  203

Query  263  RSLQRIVRDALPKALSRPQERYALKATSLTAKNLQALLALRGPGRSNVAHGAFSIFADAV  322
              LQ +V  A+P+ALSR  +R  LK TSL  ++L ALLALRGP R N A GA+SI+ADA 
Sbjct  204  LLLQALVLQAVPRALSR-SKRIQLKPTSLPTRSLDALLALRGPSRYNQAMGAWSIYADAS  262

Query  323  LEGSPLDPRPSDTISPREHFYQDLDKEN-ENQEDGNTSKETEPSSHVAKKRKLAVHSRFG  381
            +EGSPL P P   I+P +      DK+        +        +     RKL    RFG
Sbjct  263  VEGSPLGPPPKHPIAPGKRKGDHEDKDPGSGSGVDSRIIYENKRTKERVHRKLTAQERFG  322

Query  382  TTGTLSSAPLDRLDVRLLDPADDEDDEHEVDHTQP-SVSLTFVGSDVISGIRKLAELGVV  440
            T    S  PL+R++  L DP   +   +  D  +P  + L F G DV +G+R+LA+ G++
Sbjct  323  T--YDSLPPLERVEYTLEDPFKSDSGGYNSDRKEPFRIKLKFSGPDVFAGLRELADAGII  380

Query  441  DPERMPSWMTGEEAVSVAVVHRG  463
            DP +MP W+TGEE VS   V  G
Sbjct  381  DPPKMPGWLTGEEGVSSGKVRDG  403



Lambda      K        H        a         alpha
   0.316    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00030064

Length=876
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  238     4e-74
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  87.0    4e-21


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 238 bits (609),  Expect = 4e-74, Method: Composition-based stats.
 Identities = 90/186 (48%), Positives = 120/186 (65%), Gaps = 8/186 (4%)

Query  593  ELARQLTIKESRIFCAILPEELLATEWMKKSAS-LAVNVRAMSTLSTDLAHLVADSILQL  651
            ELARQLT+ E  +F  I P ELL + W KK     + N+ AM      L++ VA  IL  
Sbjct  1    ELARQLTLIEFELFRKIKPRELLGSAWSKKDKKENSPNIEAMIARFNKLSNWVASEILSE  60

Query  652  EEPKKRAAIIKQWVKIANKCLELNNYDTLMAIICSLNSSMISRLKRTWEVVSQKTKATLE  711
            E+ KKRA +IK+++KIA  C ELNN+++LMAI+  LNSS ISRLK+TWE+VS+K K TLE
Sbjct  61   EDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELVSKKYKKTLE  120

Query  712  TLRGIVDVSRNYAVLRQRLQTHVPPCLPFVGTYLTDLTFVDHGNQPLRSLPTDDGEMTVI  771
             L  ++  SRN+   R+ L +  PPC+PF+G YLTDLTF++ GN        D  E  +I
Sbjct  121  ELEKLMSPSRNFKNYREALSSASPPCIPFLGLYLTDLTFIEEGNP-------DFLEGGLI  173

Query  772  NFDKHM  777
            NF+K  
Sbjct  174  NFEKRR  179


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 87.0 bits (216),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 37/104 (36%), Positives = 52/104 (50%), Gaps = 10/104 (10%)

Query  413  QVMGGSLRALIERLTSHGSTPDAMFVSTFYLTFRLFATPLEFAEALVERFNYIGD-----  467
            QV  G+L  L+E LTS     D  F+STF LT+R F TP E  E L+ER+N         
Sbjct  1    QVKAGTLEKLVEYLTSTRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSS  60

Query  468  ----TPHAAGPVRLRVYNVFKGWLESHWRHDCDDSAL-DFIVNF  506
                      P+R+RV +V + W+E+++    DD  L   +  F
Sbjct  61   DSYWISKKTLPIRIRVLSVLRHWVENYFSDFNDDPVLLSRLEKF  104



Lambda      K        H        a         alpha
   0.315    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1121136434


Query= TCONS_00030067

Length=930
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  237     1e-73
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  86.6    6e-21


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 237 bits (608),  Expect = 1e-73, Method: Composition-based stats.
 Identities = 90/186 (48%), Positives = 120/186 (65%), Gaps = 8/186 (4%)

Query  647  ELARQLTIKESRIFCAILPEELLATEWMKKSAS-LAVNVRAMSTLSTDLAHLVADSILQL  705
            ELARQLT+ E  +F  I P ELL + W KK     + N+ AM      L++ VA  IL  
Sbjct  1    ELARQLTLIEFELFRKIKPRELLGSAWSKKDKKENSPNIEAMIARFNKLSNWVASEILSE  60

Query  706  EEPKKRAAIIKQWVKIANKCLELNNYDTLMAIICSLNSSMISRLKRTWEVVSQKTKATLE  765
            E+ KKRA +IK+++KIA  C ELNN+++LMAI+  LNSS ISRLK+TWE+VS+K K TLE
Sbjct  61   EDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELVSKKYKKTLE  120

Query  766  TLRGIVDVSRNYAVLRQRLQTHVPPCLPFVGTYLTDLTFVDHGNQPLRSLPTDDGEMTVI  825
             L  ++  SRN+   R+ L +  PPC+PF+G YLTDLTF++ GN        D  E  +I
Sbjct  121  ELEKLMSPSRNFKNYREALSSASPPCIPFLGLYLTDLTFIEEGNP-------DFLEGGLI  173

Query  826  NFDKHM  831
            NF+K  
Sbjct  174  NFEKRR  179


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 86.6 bits (215),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 37/104 (36%), Positives = 52/104 (50%), Gaps = 10/104 (10%)

Query  467  QVMGGSLRALIERLTSHGSTPDAMFVSTFYLTFRLFATPLEFAEALVERFNYIGD-----  521
            QV  G+L  L+E LTS     D  F+STF LT+R F TP E  E L+ER+N         
Sbjct  1    QVKAGTLEKLVEYLTSTRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSS  60

Query  522  ----TPHAAGPVRLRVYNVFKGWLESHWRHDCDDSAL-DFIVNF  560
                      P+R+RV +V + W+E+++    DD  L   +  F
Sbjct  61   DSYWISKKTLPIRIRVLSVLRHWVENYFSDFNDDPVLLSRLEKF  104



Lambda      K        H        a         alpha
   0.315    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0827    0.140     1.90     42.6     43.6 

Effective search space used: 1198654190


Query= TCONS_00030065

Length=930
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  237     1e-73
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  86.6    6e-21


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 237 bits (608),  Expect = 1e-73, Method: Composition-based stats.
 Identities = 90/186 (48%), Positives = 120/186 (65%), Gaps = 8/186 (4%)

Query  647  ELARQLTIKESRIFCAILPEELLATEWMKKSAS-LAVNVRAMSTLSTDLAHLVADSILQL  705
            ELARQLT+ E  +F  I P ELL + W KK     + N+ AM      L++ VA  IL  
Sbjct  1    ELARQLTLIEFELFRKIKPRELLGSAWSKKDKKENSPNIEAMIARFNKLSNWVASEILSE  60

Query  706  EEPKKRAAIIKQWVKIANKCLELNNYDTLMAIICSLNSSMISRLKRTWEVVSQKTKATLE  765
            E+ KKRA +IK+++KIA  C ELNN+++LMAI+  LNSS ISRLK+TWE+VS+K K TLE
Sbjct  61   EDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELVSKKYKKTLE  120

Query  766  TLRGIVDVSRNYAVLRQRLQTHVPPCLPFVGTYLTDLTFVDHGNQPLRSLPTDDGEMTVI  825
             L  ++  SRN+   R+ L +  PPC+PF+G YLTDLTF++ GN        D  E  +I
Sbjct  121  ELEKLMSPSRNFKNYREALSSASPPCIPFLGLYLTDLTFIEEGNP-------DFLEGGLI  173

Query  826  NFDKHM  831
            NF+K  
Sbjct  174  NFEKRR  179


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 86.6 bits (215),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 37/104 (36%), Positives = 52/104 (50%), Gaps = 10/104 (10%)

Query  467  QVMGGSLRALIERLTSHGSTPDAMFVSTFYLTFRLFATPLEFAEALVERFNYIGD-----  521
            QV  G+L  L+E LTS     D  F+STF LT+R F TP E  E L+ER+N         
Sbjct  1    QVKAGTLEKLVEYLTSTRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSS  60

Query  522  ----TPHAAGPVRLRVYNVFKGWLESHWRHDCDDSAL-DFIVNF  560
                      P+R+RV +V + W+E+++    DD  L   +  F
Sbjct  61   DSYWISKKTLPIRIRVLSVLRHWVENYFSDFNDDPVLLSRLEKF  104



Lambda      K        H        a         alpha
   0.315    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1198654190


Query= TCONS_00030066

Length=930
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  237     1e-73
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  86.6    6e-21


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 237 bits (608),  Expect = 1e-73, Method: Composition-based stats.
 Identities = 90/186 (48%), Positives = 120/186 (65%), Gaps = 8/186 (4%)

Query  647  ELARQLTIKESRIFCAILPEELLATEWMKKSAS-LAVNVRAMSTLSTDLAHLVADSILQL  705
            ELARQLT+ E  +F  I P ELL + W KK     + N+ AM      L++ VA  IL  
Sbjct  1    ELARQLTLIEFELFRKIKPRELLGSAWSKKDKKENSPNIEAMIARFNKLSNWVASEILSE  60

Query  706  EEPKKRAAIIKQWVKIANKCLELNNYDTLMAIICSLNSSMISRLKRTWEVVSQKTKATLE  765
            E+ KKRA +IK+++KIA  C ELNN+++LMAI+  LNSS ISRLK+TWE+VS+K K TLE
Sbjct  61   EDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELVSKKYKKTLE  120

Query  766  TLRGIVDVSRNYAVLRQRLQTHVPPCLPFVGTYLTDLTFVDHGNQPLRSLPTDDGEMTVI  825
             L  ++  SRN+   R+ L +  PPC+PF+G YLTDLTF++ GN        D  E  +I
Sbjct  121  ELEKLMSPSRNFKNYREALSSASPPCIPFLGLYLTDLTFIEEGNP-------DFLEGGLI  173

Query  826  NFDKHM  831
            NF+K  
Sbjct  174  NFEKRR  179


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 86.6 bits (215),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 37/104 (36%), Positives = 52/104 (50%), Gaps = 10/104 (10%)

Query  467  QVMGGSLRALIERLTSHGSTPDAMFVSTFYLTFRLFATPLEFAEALVERFNYIGD-----  521
            QV  G+L  L+E LTS     D  F+STF LT+R F TP E  E L+ER+N         
Sbjct  1    QVKAGTLEKLVEYLTSTRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSS  60

Query  522  ----TPHAAGPVRLRVYNVFKGWLESHWRHDCDDSAL-DFIVNF  560
                      P+R+RV +V + W+E+++    DD  L   +  F
Sbjct  61   DSYWISKKTLPIRIRVLSVLRHWVENYFSDFNDDPVLLSRLEKF  104



Lambda      K        H        a         alpha
   0.315    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1198654190


Query= TCONS_00034768

Length=930
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459872 pfam00617, RasGEF, RasGEF domain. Guanine nucleotide e...  237     1e-73
CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset...  86.6    6e-21


>CDD:459872 pfam00617, RasGEF, RasGEF domain.  Guanine nucleotide exchange 
factor for Ras-like small GTPases.
Length=179

 Score = 237 bits (608),  Expect = 1e-73, Method: Composition-based stats.
 Identities = 90/186 (48%), Positives = 120/186 (65%), Gaps = 8/186 (4%)

Query  647  ELARQLTIKESRIFCAILPEELLATEWMKKSAS-LAVNVRAMSTLSTDLAHLVADSILQL  705
            ELARQLT+ E  +F  I P ELL + W KK     + N+ AM      L++ VA  IL  
Sbjct  1    ELARQLTLIEFELFRKIKPRELLGSAWSKKDKKENSPNIEAMIARFNKLSNWVASEILSE  60

Query  706  EEPKKRAAIIKQWVKIANKCLELNNYDTLMAIICSLNSSMISRLKRTWEVVSQKTKATLE  765
            E+ KKRA +IK+++KIA  C ELNN+++LMAI+  LNSS ISRLK+TWE+VS+K K TLE
Sbjct  61   EDLKKRAKVIKKFIKIAEHCRELNNFNSLMAILSGLNSSPISRLKKTWELVSKKYKKTLE  120

Query  766  TLRGIVDVSRNYAVLRQRLQTHVPPCLPFVGTYLTDLTFVDHGNQPLRSLPTDDGEMTVI  825
             L  ++  SRN+   R+ L +  PPC+PF+G YLTDLTF++ GN        D  E  +I
Sbjct  121  ELEKLMSPSRNFKNYREALSSASPPCIPFLGLYLTDLTFIEEGNP-------DFLEGGLI  173

Query  826  NFDKHM  831
            NF+K  
Sbjct  174  NFEKRR  179


>CDD:459873 pfam00618, RasGEF_N, RasGEF N-terminal motif.  A subset of guanine 
nucleotide exchange factor for Ras-like small GTPases 
appear to possess this motif/domain N-terminal to the RasGef 
(Cdc25-like) domain.
Length=104

 Score = 86.6 bits (215),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 37/104 (36%), Positives = 52/104 (50%), Gaps = 10/104 (10%)

Query  467  QVMGGSLRALIERLTSHGSTPDAMFVSTFYLTFRLFATPLEFAEALVERFNYIGD-----  521
            QV  G+L  L+E LTS     D  F+STF LT+R F TP E  E L+ER+N         
Sbjct  1    QVKAGTLEKLVEYLTSTRIMLDDSFLSTFLLTYRSFTTPAELLELLIERYNIPPPLDLSS  60

Query  522  ----TPHAAGPVRLRVYNVFKGWLESHWRHDCDDSAL-DFIVNF  560
                      P+R+RV +V + W+E+++    DD  L   +  F
Sbjct  61   DSYWISKKTLPIRIRVLSVLRHWVENYFSDFNDDPVLLSRLEKF  104



Lambda      K        H        a         alpha
   0.315    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1198654190


Query= TCONS_00030069

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00030070

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00030071

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00030072

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.130    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00034772

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.130    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00030073

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:370064 pfam08689, Med5, Mediator complex subunit Med5. The me...  219     9e-65


>CDD:370064 pfam08689, Med5, Mediator complex subunit Med5.  The mediator 
complex is required for the expression of nearly all RNA pol 
II dependent genes in Saccharomyces cerevisiae. Deletion of 
the MED5 gene leads to increased transcription of nuclear 
genes encoding components of the oxidative phosphorylation machinery, 
and decreased transcription of mitochondrial genes 
encoding components of the same machinery. There is no orthologue 
from pombe, and this subunit appears to be fungal specific.
Length=1082

 Score = 219 bits (559),  Expect = 9e-65, Method: Composition-based stats.
 Identities = 61/349 (17%), Positives = 116/349 (33%), Gaps = 74/349 (21%)

Query  1     MELDPSIP------LKVLHSLVNPSSISGEAREIHRTVLNIAARTLEEQLKDVRTRH---  51
             ++ D +        LK+L+S++NPSS++ ++R  H  VL + A  L + L+  R R    
Sbjct  747   LKNDDTDEDLLQKILKLLNSIINPSSLNEDSRAFHSAVLRLNAVRLLKVLRKFRVRQSQS  806

Query  52    ----------------------PSRTDIKPILDSLEPCLSFQLVGSSHRSEL--EGWTTH  87
                                    S  +I PI D     +S Q    S   +L    +   
Sbjct  807   NYGIYSSDSQGDPKLESLISKLESVLNISPIYDVDPRIISSQENMYSQ-KQLGYGKFLIT  865

Query  88    SSGGLLGSIRSTFQSLVLWSTNPEVSMAPPPYTHRQLIAGVRMLGASRVLPALIEELKLQ  147
             +   +   + +   S   W+ +         Y H  L   + ++   + L  ++  LK +
Sbjct  866   NENPINKIMTNQINS--FWNLHSS-----TYYNHDYLNELIDLVTPKKFLFDVLRTLKYK  918

Query  148   TEA------------GNGPLALDLAATLICAPMAET-----FSVEQNSHQPVDPNKEALP  190
               +            G     LD     +     E+     + ++   +       E  P
Sbjct  919   VTSYGVPGSRNKMSNGESEHVLDYLFYFLVLYDVESQEDASYLIQYMENGSESSVSEITP  978

Query  191   RCGILTLRDVLALQHENVPKISEKDPLRAEVLVRLYRRVNALLAPPSQVP-------NLD  243
             +   + L+        N     + D L  E          +L AP  ++         ++
Sbjct  979   QKEEVNLKPKSEQDQFN-SMDDDFDMLFGENE-------TSLQAPDEELFSQITVLEKVN  1030

Query  244   VNNIIQNMQLGGVGVGAGQMELDA-TGAADHGVGPDDAENIHRMIDNAA  291
              +N I  ++    GV   +M+LD  T   D  +  +D E +    D   
Sbjct  1031  KSNNILALKRDSFGVILHEMKLDYDTALEDGDISKEDYEKLCTYHDKYL  1079



Lambda      K        H        a         alpha
   0.315    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00030074

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:370064 pfam08689, Med5, Mediator complex subunit Med5. The me...  129     7e-35


>CDD:370064 pfam08689, Med5, Mediator complex subunit Med5.  The mediator 
complex is required for the expression of nearly all RNA pol 
II dependent genes in Saccharomyces cerevisiae. Deletion of 
the MED5 gene leads to increased transcription of nuclear 
genes encoding components of the oxidative phosphorylation machinery, 
and decreased transcription of mitochondrial genes 
encoding components of the same machinery. There is no orthologue 
from pombe, and this subunit appears to be fungal specific.
Length=1082

 Score = 129 bits (325),  Expect = 7e-35, Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 63/200 (32%), Gaps = 33/200 (17%)

Query  4     PPYTHRQLIAGVRMLGASRVLPALIEELKLQTEA------------GNGPLALDLAATLI  51
               Y H  L   + ++   + L  ++  LK +  +            G     LD     +
Sbjct  888   TYYNHDYLNELIDLVTPKKFLFDVLRTLKYKVTSYGVPGSRNKMSNGESEHVLDYLFYFL  947

Query  52    CAPMAET-----FSVEQNSHQPVDPNKEALPRCGILTLRDVLALQHENVPKISEKDPLRA  106
                  E+     + ++   +       E  P+   + L+        N     + D L  
Sbjct  948   VLYDVESQEDASYLIQYMENGSESSVSEITPQKEEVNLKPKSEQDQFN-SMDDDFDMLFG  1006

Query  107   EVLVRLYRRVNALLAPPSQVP-------NLDVNNIIQNMQLGGVGVGAGQMELDA-TGAA  158
             E          +L AP  ++         ++ +N I  ++    GV   +M+LD  T   
Sbjct  1007  ENE-------TSLQAPDEELFSQITVLEKVNKSNNILALKRDSFGVILHEMKLDYDTALE  1059

Query  159   DHGVGPDDAENIHRMIDNAA  178
             D  +  +D E +    D   
Sbjct  1060  DGDISKEDYEKLCTYHDKYL  1079



Lambda      K        H        a         alpha
   0.316    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00034774

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00034775

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.143    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00034776

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00034777

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00034778

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00034779

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalan...  315     3e-107
CDD:460706 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogen...  215     7e-70 


>CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine 
dehydrogenase.  
Length=240

 Score = 315 bits (809),  Expect = 3e-107, Method: Composition-based stats.
 Identities = 119/262 (45%), Positives = 157/262 (60%), Gaps = 34/262 (13%)

Query  188  GGSLIRPEATGYGLVYYVDHMIKYVTKGAESFAGKRVAISGSGNVAQFAALKVIELGGSV  247
            GGSL RPEATGYG+VY+V+ M+K    G +S  GKRVAI G GNV  +AALK+ ELG  V
Sbjct  1    GGSLGRPEATGYGVVYFVEEMLKK--LGGDSLEGKRVAIQGFGNVGSYAALKLHELGAKV  58

Query  248  VSLSDSKGSLVVNGEGSFTPAEIDI--IAQLKVDRKQLSEVATTEAFATKFKYIEGARPW  305
            V++SDS G+ + + +G      +DI  + +LK +R  + E A +       +YI     W
Sbjct  59   VAVSDSSGA-IYDPDG------LDIEELLELKEERGSVDEYALSG----GAEYIPNEELW  107

Query  306  VHVGKVDVALPSATQNEVSGEEAQALIDAGCKFIAEGSNMGCTQAAIDIFE---------  356
                  D+ +P ATQNE++ E A+ LI  G K + EG+NM  T  A DI E         
Sbjct  108  EL--PCDILVPCATQNEITEENAKTLIKNGAKIVVEGANMPTTPEADDILEERGVLVVPD  165

Query  357  -AANAGGVAVSGLEMAQNSARISWTAEEVDSRLKDIMESCFRNGLDTAVKYATPAEGVLP  415
             AANAGGV VS LEM QN  R+SWT EEVD +LK+IM + F   ++TA +Y         
Sbjct  166  KAANAGGVTVSYLEMVQNLQRLSWTEEEVDEKLKEIMTNAFDAVVETAQEYG-------V  218

Query  416  SLVTGSNIAGFTKVAEAMKEQG  437
             L TG+NIAGF +VA+AMK +G
Sbjct  219  DLRTGANIAGFERVADAMKARG  240


>CDD:460706 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogenase, dimerization 
domain.  
Length=129

 Score = 215 bits (551),  Expect = 7e-70, Method: Composition-based stats.
 Identities = 69/129 (53%), Positives = 88/129 (68%), Gaps = 0/129 (0%)

Query  43   PERVVQFRVVWEDDNHQVQINRGYRVQFNSALGPYKGGLRFHPSVNLSILKFLGFEQIFK  102
            PERV+Q RV  + D+ +V++ RGYRVQ N+ALGP KGG+RFHP VNL  +K L F   +K
Sbjct  1    PERVIQVRVPVKMDDGEVEVFRGYRVQHNTALGPAKGGIRFHPYVNLDEVKALAFLMTYK  60

Query  103  NALTGLNMGGGKGGSDFDPKGKSDNEIRRFCVAFMTELCKHIGADTDVPAGDIGVTGREI  162
            NAL GL  GGGKGG   DPK  SD E+ R    F+ EL ++IG DTDVPA D+G   RE+
Sbjct  61   NALAGLPFGGGKGGIIVDPKKLSDEELERLTRRFVRELARYIGPDTDVPAPDVGTGAREM  120

Query  163  GFLFGQYRK  171
             ++  +Y K
Sbjct  121  AWMADEYSK  129



Lambda      K        H        a         alpha
   0.316    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00030080

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalan...  323     8e-112
CDD:460706 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogen...  111     1e-30 


>CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine 
dehydrogenase.  
Length=240

 Score = 323 bits (830),  Expect = 8e-112, Method: Composition-based stats.
 Identities = 121/270 (45%), Positives = 160/270 (59%), Gaps = 32/270 (12%)

Query  79   GGSLIRPEATGYGLVYYVDHMIKYVTKGAESFAGKRVAISGSGNVAQFAALKVIELGGSV  138
            GGSL RPEATGYG+VY+V+ M+K    G +S  GKRVAI G GNV  +AALK+ ELG  V
Sbjct  1    GGSLGRPEATGYGVVYFVEEMLKK--LGGDSLEGKRVAIQGFGNVGSYAALKLHELGAKV  58

Query  139  VSLSDSKGSLVVNGEGSFTPAEIDI--IAQLKVDRKQLSEVATTEAFATKFKYIEGARPW  196
            V++SDS G+ + + +G      +DI  + +LK +R  + E A +       +YI     W
Sbjct  59   VAVSDSSGA-IYDPDG------LDIEELLELKEERGSVDEYALSG----GAEYIPNEELW  107

Query  197  VHVGKVDVALPSATQNEVSGEEAQALIDAGCKFIAEGSNMGCTQAAIDIFEAHRQANPGA  256
                  D+ +P ATQNE++ E A+ LI  G K + EG+NM  T  A DI E         
Sbjct  108  EL--PCDILVPCATQNEITEENAKTLIKNGAKIVVEGANMPTTPEADDILEERG------  159

Query  257  AAIWYAPGKAANAGGVAVSGLEMAQNSARISWTAEEVDSRLKDIMESCFRNGLDTAVKYA  316
              +   P KAANAGGV VS LEM QN  R+SWT EEVD +LK+IM + F   ++TA +Y 
Sbjct  160  --VLVVPDKAANAGGVTVSYLEMVQNLQRLSWTEEEVDEKLKEIMTNAFDAVVETAQEYG  217

Query  317  TPAEGVLPSLVTGSNIAGFTKVAEAMKEQG  346
                     L TG+NIAGF +VA+AMK +G
Sbjct  218  -------VDLRTGANIAGFERVADAMKARG  240


>CDD:460706 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogenase, dimerization 
domain.  
Length=129

 Score = 111 bits (281),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 39/62 (63%), Gaps = 0/62 (0%)

Query  1    MGGGKGGSDFDPKGKSDNEIRRFCVAFMTELCKHIGADTDVPAGDIGVTGREIGFLFGQY  60
             GGGKGG   DPK  SD E+ R    F+ EL ++IG DTDVPA D+G   RE+ ++  +Y
Sbjct  68   FGGGKGGIIVDPKKLSDEELERLTRRFVRELARYIGPDTDVPAPDVGTGAREMAWMADEY  127

Query  61   RK  62
             K
Sbjct  128  SK  129



Lambda      K        H        a         alpha
   0.315    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00030081

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalan...  225     2e-72
CDD:460706 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogen...  215     3e-70


>CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine 
dehydrogenase.  
Length=240

 Score = 225 bits (575),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 95/262 (36%), Positives = 130/262 (50%), Gaps = 76/262 (29%)

Query  188  GGSLIRPEATGYGLVYYVDHMIKYVTKGAESFAGKRVAISGSGNVAQFAALKVIELGGSV  247
            GGSL RPEATGYG+VY+V+ M+K    G +S  GKRVAI G GNV  +AALK+ ELG  V
Sbjct  1    GGSLGRPEATGYGVVYFVEEMLKK--LGGDSLEGKRVAIQGFGNVGSYAALKLHELGAKV  58

Query  248  VSLSDSKGSLVVNGEGSFTPAEIDI--IAQLKVDRKQLSEVATTEAFATKFKYIEGARPW  305
            V++SDS G+ + + +G      +DI  + +LK +R  + E A +       +YI     W
Sbjct  59   VAVSDSSGA-IYDPDG------LDIEELLELKEERGSVDEYALSG----GAEYIPNEELW  107

Query  306  VHVGKVDVALPSATQNEVSGE---------------------------------------  326
                  D+ +P ATQNE++ E                                       
Sbjct  108  EL--PCDILVPCATQNEITEENAKTLIKNGAKIVVEGANMPTTPEADDILEERGVLVVPD  165

Query  327  -------------EMAQNSARISWTAEEVDSRLKDIMESCFRNGLDTAVKYATPAEGVLP  373
                         EM QN  R+SWT EEVD +LK+IM + F   ++TA +Y         
Sbjct  166  KAANAGGVTVSYLEMVQNLQRLSWTEEEVDEKLKEIMTNAFDAVVETAQEYG-------V  218

Query  374  SLVTGSNIAGFTKVAEAMKEQG  395
             L TG+NIAGF +VA+AMK +G
Sbjct  219  DLRTGANIAGFERVADAMKARG  240


>CDD:460706 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogenase, dimerization 
domain.  
Length=129

 Score = 215 bits (550),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 69/129 (53%), Positives = 88/129 (68%), Gaps = 0/129 (0%)

Query  43   PERVVQFRVVWEDDNHQVQINRGYRVQFNSALGPYKGGLRFHPSVNLSILKFLGFEQIFK  102
            PERV+Q RV  + D+ +V++ RGYRVQ N+ALGP KGG+RFHP VNL  +K L F   +K
Sbjct  1    PERVIQVRVPVKMDDGEVEVFRGYRVQHNTALGPAKGGIRFHPYVNLDEVKALAFLMTYK  60

Query  103  NALTGLNMGGGKGGSDFDPKGKSDNEIRRFCVAFMTELCKHIGADTDVPAGDIGVTGREI  162
            NAL GL  GGGKGG   DPK  SD E+ R    F+ EL ++IG DTDVPA D+G   RE+
Sbjct  61   NALAGLPFGGGKGGIIVDPKKLSDEELERLTRRFVRELARYIGPDTDVPAPDVGTGAREM  120

Query  163  GFLFGQYRK  171
             ++  +Y K
Sbjct  121  AWMADEYSK  129



Lambda      K        H        a         alpha
   0.316    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00030082

Length=458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalan...  331     2e-113
CDD:460706 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogen...  215     1e-69 


>CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine 
dehydrogenase.  
Length=240

 Score = 331 bits (851),  Expect = 2e-113, Method: Composition-based stats.
 Identities = 121/270 (45%), Positives = 160/270 (59%), Gaps = 32/270 (12%)

Query  188  GGSLIRPEATGYGLVYYVDHMIKYVTKGAESFAGKRVAISGSGNVAQFAALKVIELGGSV  247
            GGSL RPEATGYG+VY+V+ M+K    G +S  GKRVAI G GNV  +AALK+ ELG  V
Sbjct  1    GGSLGRPEATGYGVVYFVEEMLKK--LGGDSLEGKRVAIQGFGNVGSYAALKLHELGAKV  58

Query  248  VSLSDSKGSLVVNGEGSFTPAEIDI--IAQLKVDRKQLSEVATTEAFATKFKYIEGARPW  305
            V++SDS G+ + + +G      +DI  + +LK +R  + E A +       +YI     W
Sbjct  59   VAVSDSSGA-IYDPDG------LDIEELLELKEERGSVDEYALSG----GAEYIPNEELW  107

Query  306  VHVGKVDVALPSATQNEVSGEEAQALIDAGCKFIAEGSNMGCTQAAIDIFEAHRQANPGA  365
                  D+ +P ATQNE++ E A+ LI  G K + EG+NM  T  A DI E         
Sbjct  108  EL--PCDILVPCATQNEITEENAKTLIKNGAKIVVEGANMPTTPEADDILEERG------  159

Query  366  AAIWYAPGKAANAGGVAVSGLEMAQNSARISWTAEEVDSRLKDIMESCFRNGLDTAVKYA  425
              +   P KAANAGGV VS LEM QN  R+SWT EEVD +LK+IM + F   ++TA +Y 
Sbjct  160  --VLVVPDKAANAGGVTVSYLEMVQNLQRLSWTEEEVDEKLKEIMTNAFDAVVETAQEYG  217

Query  426  TPAEGVLPSLVTGSNIAGFTKVAEAMKEQG  455
                     L TG+NIAGF +VA+AMK +G
Sbjct  218  -------VDLRTGANIAGFERVADAMKARG  240


>CDD:460706 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogenase, dimerization 
domain.  
Length=129

 Score = 215 bits (550),  Expect = 1e-69, Method: Composition-based stats.
 Identities = 69/129 (53%), Positives = 88/129 (68%), Gaps = 0/129 (0%)

Query  43   PERVVQFRVVWEDDNHQVQINRGYRVQFNSALGPYKGGLRFHPSVNLSILKFLGFEQIFK  102
            PERV+Q RV  + D+ +V++ RGYRVQ N+ALGP KGG+RFHP VNL  +K L F   +K
Sbjct  1    PERVIQVRVPVKMDDGEVEVFRGYRVQHNTALGPAKGGIRFHPYVNLDEVKALAFLMTYK  60

Query  103  NALTGLNMGGGKGGSDFDPKGKSDNEIRRFCVAFMTELCKHIGADTDVPAGDIGVTGREI  162
            NAL GL  GGGKGG   DPK  SD E+ R    F+ EL ++IG DTDVPA D+G   RE+
Sbjct  61   NALAGLPFGGGKGGIIVDPKKLSDEELERLTRRFVRELARYIGPDTDVPAPDVGTGAREM  120

Query  163  GFLFGQYRK  171
             ++  +Y K
Sbjct  121  AWMADEYSK  129



Lambda      K        H        a         alpha
   0.316    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 564403072


Query= TCONS_00030083

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalan...  323     8e-112
CDD:460706 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogen...  111     1e-30 


>CDD:425526 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine 
dehydrogenase.  
Length=240

 Score = 323 bits (830),  Expect = 8e-112, Method: Composition-based stats.
 Identities = 121/270 (45%), Positives = 160/270 (59%), Gaps = 32/270 (12%)

Query  79   GGSLIRPEATGYGLVYYVDHMIKYVTKGAESFAGKRVAISGSGNVAQFAALKVIELGGSV  138
            GGSL RPEATGYG+VY+V+ M+K    G +S  GKRVAI G GNV  +AALK+ ELG  V
Sbjct  1    GGSLGRPEATGYGVVYFVEEMLKK--LGGDSLEGKRVAIQGFGNVGSYAALKLHELGAKV  58

Query  139  VSLSDSKGSLVVNGEGSFTPAEIDI--IAQLKVDRKQLSEVATTEAFATKFKYIEGARPW  196
            V++SDS G+ + + +G      +DI  + +LK +R  + E A +       +YI     W
Sbjct  59   VAVSDSSGA-IYDPDG------LDIEELLELKEERGSVDEYALSG----GAEYIPNEELW  107

Query  197  VHVGKVDVALPSATQNEVSGEEAQALIDAGCKFIAEGSNMGCTQAAIDIFEAHRQANPGA  256
                  D+ +P ATQNE++ E A+ LI  G K + EG+NM  T  A DI E         
Sbjct  108  EL--PCDILVPCATQNEITEENAKTLIKNGAKIVVEGANMPTTPEADDILEERG------  159

Query  257  AAIWYAPGKAANAGGVAVSGLEMAQNSARISWTAEEVDSRLKDIMESCFRNGLDTAVKYA  316
              +   P KAANAGGV VS LEM QN  R+SWT EEVD +LK+IM + F   ++TA +Y 
Sbjct  160  --VLVVPDKAANAGGVTVSYLEMVQNLQRLSWTEEEVDEKLKEIMTNAFDAVVETAQEYG  217

Query  317  TPAEGVLPSLVTGSNIAGFTKVAEAMKEQG  346
                     L TG+NIAGF +VA+AMK +G
Sbjct  218  -------VDLRTGANIAGFERVADAMKARG  240


>CDD:460706 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogenase, dimerization 
domain.  
Length=129

 Score = 111 bits (281),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 39/62 (63%), Gaps = 0/62 (0%)

Query  1    MGGGKGGSDFDPKGKSDNEIRRFCVAFMTELCKHIGADTDVPAGDIGVTGREIGFLFGQY  60
             GGGKGG   DPK  SD E+ R    F+ EL ++IG DTDVPA D+G   RE+ ++  +Y
Sbjct  68   FGGGKGGIIVDPKKLSDEELERLTRRFVRELARYIGPDTDVPAPDVGTGAREMAWMADEY  127

Query  61   RK  62
             K
Sbjct  128  SK  129



Lambda      K        H        a         alpha
   0.315    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00034780

Length=413


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00030084

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00030085

Length=518


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00030086

Length=627


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787537860


Query= TCONS_00030087

Length=518


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00030088

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00034781

Length=518


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00030089

Length=518


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00030090

Length=518


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00034782

Length=518


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 646506182


Query= TCONS_00030091

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00030092

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460729 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, ...  446     9e-155


>CDD:460729 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel 
domain.  
Length=487

 Score = 446 bits (1149),  Expect = 9e-155, Method: Composition-based stats.
 Identities = 156/342 (46%), Positives = 206/342 (60%), Gaps = 50/342 (15%)

Query  1    MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDF  60
            +L+KDA N+K+ QK+LGTI+SSNLCTEI++ ++P E+AVCNLAS+ L  FV+   G +DF
Sbjct  189  ILFKDAVNRKNPQKHLGTIKSSNLCTEIVQPTSPSEIAVCNLASINLAKFVEF-GGTFDF  247

Query  61   GKLHEVVQVLVRNLNKIIDVNYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLPFDSAE  120
             KL EVV++ VR L+ +ID+N YPVPEA++SN RHRPI LGV GLADA   L +P+DS E
Sbjct  248  EKLREVVKLAVRALDNVIDINDYPVPEARRSNKRHRPIGLGVMGLADALAKLGIPYDSEE  307

Query  121  ARQLNIQIFETIYHGALTASCELAKEFGPYETYEGSPVSQGILQYDMWDRTPTD------  174
            AR LN +IFET+Y+ AL AS ELAKE GP+  +EGS  S+GILQ+D + +T         
Sbjct  308  ARDLNDKIFETMYYYALKASSELAKEKGPFPGFEGSKYSKGILQFDKYVKTDFAPKASKT  367

Query  175  LWDWDSLKAKIAQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVV  234
              DW+ L+  I ++G+RNS L A  PT S SQI G  E  EP  SN+YSR+VL+      
Sbjct  368  REDWEELREDIKKYGLRNSQLTAIAPTGSISQIAGATESIEPIFSNVYSRKVLS------  421

Query  235  NPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRTILQMAAD  294
                                                 + K  YKT ++I Q+  + MAA 
Sbjct  422  ------------------------------------EETKEYYKTAYDIDQKAHIDMAAA  445

Query  295  RGAFIDQSQSLNIHLKE-PTMGKLTSMHFAGWKMGLKTGMYY  335
            R  F+DQS S  + L    T   L S++   WK+GLKT  YY
Sbjct  446  RQPFVDQSISKTLFLPNDATTSDLKSLYLYAWKLGLKTIYYY  487



Lambda      K        H        a         alpha
   0.316    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00030093

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00030094

Length=437


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00034783

Length=437


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00030095

Length=421


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00030096

Length=421


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00030097

Length=425


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521922912


Query= TCONS_00030107

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  219     9e-66
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            196     4e-57


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 219 bits (559),  Expect = 9e-66, Method: Composition-based stats.
 Identities = 85/253 (34%), Positives = 128/253 (51%), Gaps = 38/253 (15%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNI  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  120  VKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVI  179
            V+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL---------  111

Query  180  HRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIW  239
                         E    L              ++ VGTP++MAPEV+  +      D+W
Sbjct  112  -------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVDVW  144

Query  240  SLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNL  297
            SLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP+ 
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  298  RVSARKLLKHPWI  310
            R++A + L+HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 196 bits (501),  Expect = 4e-57, Method: Composition-based stats.
 Identities = 79/258 (31%), Positives = 121/258 (47%), Gaps = 13/258 (5%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  117  PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  175
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  176  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  230
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  231  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  289
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  290  CFQKDPNLRVSARKLLKH  307
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390653048


Query= TCONS_00034784

Length=336


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00030098

Length=1354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  219     2e-65
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            196     5e-57


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 219 bits (559),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 85/253 (34%), Positives = 128/253 (51%), Gaps = 38/253 (15%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNI  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  120  VKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVI  179
            V+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL---------  111

Query  180  HRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIW  239
                         E    L              ++ VGTP++MAPEV+  +      D+W
Sbjct  112  -------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVDVW  144

Query  240  SLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNL  297
            SLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP+ 
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  298  RVSARKLLKHPWI  310
            R++A + L+HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 196 bits (501),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 79/258 (31%), Positives = 121/258 (47%), Gaps = 13/258 (5%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  117  PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  175
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  176  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  230
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  231  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  289
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  290  CFQKDPNLRVSARKLLKH  307
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1729009600


Query= TCONS_00034785

Length=1350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  219     2e-65
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            196     5e-57


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 219 bits (559),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 85/253 (34%), Positives = 128/253 (51%), Gaps = 38/253 (15%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNI  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  120  VKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVI  179
            V+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL---------  111

Query  180  HRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIW  239
                         E    L              ++ VGTP++MAPEV+  +      D+W
Sbjct  112  -------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVDVW  144

Query  240  SLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNL  297
            SLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP+ 
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  298  RVSARKLLKHPWI  310
            R++A + L+HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 196 bits (501),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 79/258 (31%), Positives = 121/258 (47%), Gaps = 13/258 (5%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  117  PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  175
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  176  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  230
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  231  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  289
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  290  CFQKDPNLRVSARKLLKH  307
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1723503200


Query= TCONS_00030099

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  219     9e-66
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            196     4e-57


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 219 bits (559),  Expect = 9e-66, Method: Composition-based stats.
 Identities = 85/253 (34%), Positives = 128/253 (51%), Gaps = 38/253 (15%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNI  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  120  VKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVI  179
            V+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL---------  111

Query  180  HRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIW  239
                         E    L              ++ VGTP++MAPEV+  +      D+W
Sbjct  112  -------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVDVW  144

Query  240  SLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNL  297
            SLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP+ 
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  298  RVSARKLLKHPWI  310
            R++A + L+HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 196 bits (501),  Expect = 4e-57, Method: Composition-based stats.
 Identities = 79/258 (31%), Positives = 121/258 (47%), Gaps = 13/258 (5%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  117  PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  175
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  176  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  230
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  231  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  289
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  290  CFQKDPNLRVSARKLLKH  307
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390653048


Query= TCONS_00034786

Length=604
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  219     3e-68
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            196     4e-59


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 219 bits (559),  Expect = 3e-68, Method: Composition-based stats.
 Identities = 85/253 (34%), Positives = 128/253 (51%), Gaps = 38/253 (15%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNI  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  120  VKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVI  179
            V+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL---------  111

Query  180  HRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIW  239
                         E    L              ++ VGTP++MAPEV+  +      D+W
Sbjct  112  -------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVDVW  144

Query  240  SLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNL  297
            SLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP+ 
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  298  RVSARKLLKHPWI  310
            R++A + L+HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 196 bits (501),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 79/258 (31%), Positives = 121/258 (47%), Gaps = 13/258 (5%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  117  PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  175
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  176  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  230
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  231  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  289
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  290  CFQKDPNLRVSARKLLKH  307
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.314    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 765147136


Query= TCONS_00034787

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  219     9e-66
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            196     4e-57


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 219 bits (559),  Expect = 9e-66, Method: Composition-based stats.
 Identities = 85/253 (34%), Positives = 128/253 (51%), Gaps = 38/253 (15%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNI  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  120  VKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVI  179
            V+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL---------  111

Query  180  HRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIW  239
                         E    L              ++ VGTP++MAPEV+  +      D+W
Sbjct  112  -------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVDVW  144

Query  240  SLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNL  297
            SLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP+ 
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  298  RVSARKLLKHPWI  310
            R++A + L+HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 196 bits (501),  Expect = 4e-57, Method: Composition-based stats.
 Identities = 79/258 (31%), Positives = 121/258 (47%), Gaps = 13/258 (5%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  117  PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  175
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  176  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  230
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  231  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  289
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  290  CFQKDPNLRVSARKLLKH  307
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390653048


Query= TCONS_00030100

Length=908
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  219     3e-66
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            196     2e-57


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 219 bits (559),  Expect = 3e-66, Method: Composition-based stats.
 Identities = 85/253 (34%), Positives = 128/253 (51%), Gaps = 38/253 (15%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNI  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  120  VKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVI  179
            V+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL---------  111

Query  180  HRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIW  239
                         E    L              ++ VGTP++MAPEV+  +      D+W
Sbjct  112  -------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVDVW  144

Query  240  SLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNL  297
            SLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP+ 
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  298  RVSARKLLKHPWI  310
            R++A + L+HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 196 bits (501),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 79/258 (31%), Positives = 121/258 (47%), Gaps = 13/258 (5%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  117  PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  175
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  176  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  230
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  231  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  289
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  290  CFQKDPNLRVSARKLLKH  307
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 1167072882


Query= TCONS_00030101

Length=1049
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  188     5e-55
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            184     7e-53


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 188 bits (480),  Expect = 5e-55, Method: Composition-based stats.
 Identities = 81/255 (32%), Positives = 116/255 (45%), Gaps = 45/255 (18%)

Query  37   RDEKSGEG---RVVKSSAKDVAELKDYTVAVKQIKLADLPKSELRVIMLEIDLLKNLDHP  93
               K G G    V K  AK         VA+K+IK   + K + + I+ EI +LK L+HP
Sbjct  3    VLRKLGSGSFGTVYK--AKHRD--TGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHP  58

Query  94   NIVKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQG  153
            NIV+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL       
Sbjct  59   NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL-------  111

Query  154  VIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASD  213
                           E    L              ++ VGTP++MAPEV+  +      D
Sbjct  112  ---------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVD  142

Query  214  IWSLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDP  271
            +WSLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP
Sbjct  143  VWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDP  202

Query  272  NLRVSARKLLKHPWI  286
            + R++A + L+HPW 
Sbjct  203  SKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 184 bits (469),  Expect = 7e-53, Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 117/258 (45%), Gaps = 12/258 (5%)

Query  36   KRDEKSGEG---RVVKSSAKDVAELKDYTVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  92
               EK GEG    V K + K   E     VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  93   PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  151
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  152  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  206
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  207  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  265
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  266  CFQKDPNLRVSARKLLKH  283
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1349329828


Query= TCONS_00030102

Length=1073
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  219     8e-66
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            196     3e-57


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 219 bits (559),  Expect = 8e-66, Method: Composition-based stats.
 Identities = 85/253 (34%), Positives = 128/253 (51%), Gaps = 38/253 (15%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNI  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  120  VKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVI  179
            V+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL---------  111

Query  180  HRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIW  239
                         E    L              ++ VGTP++MAPEV+  +      D+W
Sbjct  112  -------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVDVW  144

Query  240  SLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNL  297
            SLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP+ 
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  298  RVSARKLLKHPWI  310
            R++A + L+HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 196 bits (501),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 79/258 (31%), Positives = 121/258 (47%), Gaps = 13/258 (5%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  117  PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  175
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  176  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  230
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  231  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  289
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  290  CFQKDPNLRVSARKLLKH  307
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1383310852


Query= TCONS_00030103

Length=955
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  219     4e-66
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            196     2e-57


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 219 bits (559),  Expect = 4e-66, Method: Composition-based stats.
 Identities = 85/253 (34%), Positives = 128/253 (51%), Gaps = 38/253 (15%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNI  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  120  VKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVI  179
            V+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL---------  111

Query  180  HRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIW  239
                         E    L              ++ VGTP++MAPEV+  +      D+W
Sbjct  112  -------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVDVW  144

Query  240  SLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNL  297
            SLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP+ 
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  298  RVSARKLLKHPWI  310
            R++A + L+HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 196 bits (501),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 79/258 (31%), Positives = 121/258 (47%), Gaps = 13/258 (5%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  117  PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  175
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  176  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  230
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  231  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  289
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  290  CFQKDPNLRVSARKLLKH  307
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1216237484


Query= TCONS_00034788

Length=1093
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  219     9e-66
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            196     4e-57


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 219 bits (559),  Expect = 9e-66, Method: Composition-based stats.
 Identities = 85/253 (34%), Positives = 128/253 (51%), Gaps = 38/253 (15%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNI  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  120  VKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVI  179
            V+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL---------  111

Query  180  HRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIW  239
                         E    L              ++ VGTP++MAPEV+  +      D+W
Sbjct  112  -------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVDVW  144

Query  240  SLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNL  297
            SLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP+ 
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  298  RVSARKLLKHPWI  310
            R++A + L+HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 196 bits (501),  Expect = 4e-57, Method: Composition-based stats.
 Identities = 79/258 (31%), Positives = 121/258 (47%), Gaps = 13/258 (5%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  117  PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  175
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  176  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  230
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  231  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  289
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  290  CFQKDPNLRVSARKLLKH  307
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1390653048


Query= TCONS_00034789

Length=955
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  219     4e-66
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            196     2e-57


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 219 bits (559),  Expect = 4e-66, Method: Composition-based stats.
 Identities = 85/253 (34%), Positives = 128/253 (51%), Gaps = 38/253 (15%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNI  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  120  VKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVI  179
            V+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL---------  111

Query  180  HRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIW  239
                         E    L              ++ VGTP++MAPEV+  +      D+W
Sbjct  112  -------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVDVW  144

Query  240  SLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNL  297
            SLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP+ 
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  298  RVSARKLLKHPWI  310
            R++A + L+HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 196 bits (501),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 79/258 (31%), Positives = 121/258 (47%), Gaps = 13/258 (5%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  117  PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  175
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  176  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  230
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  231  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  289
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  290  CFQKDPNLRVSARKLLKH  307
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1216237484


Query= TCONS_00030104

Length=1389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  207     1e-61
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            185     5e-53


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 207 bits (530),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 85/272 (31%), Positives = 127/272 (47%), Gaps = 57/272 (21%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDVRLR  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKL-----  55

Query  120  YNKHSRPTELTEWLQHPNIVKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVG  179
                           HPNIV+ +   +  + L ++LEY E GSL  +    G F E    
Sbjct  56   --------------NHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAK  101

Query  180  LYMSQVLHGLLYLHEQGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPY  239
              M Q+L GL                      E    L              ++ VGTP+
Sbjct  102  FIMKQILEGL----------------------ESGSSL--------------TTFVGTPW  125

Query  240  WMAPEVIELSGATTASDIWSLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQG  297
            +MAPEV+  +      D+WSLGC + ELL GKPP+  +        I++     P LP  
Sbjct  126  YMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSN  185

Query  298  ASPAVKDFLMQCFQKDPNLRVSARKLLKHPWI  329
             S   KD L +  +KDP+ R++A + L+HPW 
Sbjct  186  LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 185 bits (471),  Expect = 5e-53, Method: Composition-based stats.
 Identities = 79/277 (29%), Positives = 121/277 (44%), Gaps = 32/277 (12%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDV  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LD 
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLD-  59

Query  117  RLRYNKHSRPTELTEWLQHPNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPE  175
                              HPNIVK  G     E L I+ EY   G L   + K+  +   
Sbjct  60   ------------------HPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTL  101

Query  176  NLVGLYMSQVLHGLLYLHEQGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVV  235
              +     Q+  G+ YL  +  +HRD+   N L ++  +VK++DFG+ SR     +    
Sbjct  102  KDLLSMALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRK  160

Query  236  GT----PY-WMAPEVIELSGATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVND  289
                  P  WMAPE ++    T+ SD+WS G  + E+   G+ PY  +     L  + + 
Sbjct  161  RGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDG  220

Query  290  DHPPLPQGASPAVKDFLMQCFQKDPNLRVSARKLLKH  326
               P P+     + D + QC+  DP  R +  +L++ 
Sbjct  221  YRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1777190600


Query= TCONS_00030105

Length=1389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  207     1e-61
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            185     5e-53


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 207 bits (530),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 85/272 (31%), Positives = 127/272 (47%), Gaps = 57/272 (21%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDVRLR  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L     
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKL-----  55

Query  120  YNKHSRPTELTEWLQHPNIVKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVG  179
                           HPNIV+ +   +  + L ++LEY E GSL  +    G F E    
Sbjct  56   --------------NHPNIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAK  101

Query  180  LYMSQVLHGLLYLHEQGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPY  239
              M Q+L GL                      E    L              ++ VGTP+
Sbjct  102  FIMKQILEGL----------------------ESGSSL--------------TTFVGTPW  125

Query  240  WMAPEVIELSGATTASDIWSLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQG  297
            +MAPEV+  +      D+WSLGC + ELL GKPP+  +        I++     P LP  
Sbjct  126  YMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSN  185

Query  298  ASPAVKDFLMQCFQKDPNLRVSARKLLKHPWI  329
             S   KD L +  +KDP+ R++A + L+HPW 
Sbjct  186  LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 185 bits (471),  Expect = 5e-53, Method: Composition-based stats.
 Identities = 79/277 (29%), Positives = 121/277 (44%), Gaps = 32/277 (12%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDV  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LD 
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLD-  59

Query  117  RLRYNKHSRPTELTEWLQHPNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPE  175
                              HPNIVK  G     E L I+ EY   G L   + K+  +   
Sbjct  60   ------------------HPNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTL  101

Query  176  NLVGLYMSQVLHGLLYLHEQGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVV  235
              +     Q+  G+ YL  +  +HRD+   N L ++  +VK++DFG+ SR     +    
Sbjct  102  KDLLSMALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRK  160

Query  236  GT----PY-WMAPEVIELSGATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVND  289
                  P  WMAPE ++    T+ SD+WS G  + E+   G+ PY  +     L  + + 
Sbjct  161  RGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDG  220

Query  290  DHPPLPQGASPAVKDFLMQCFQKDPNLRVSARKLLKH  326
               P P+     + D + QC+  DP  R +  +L++ 
Sbjct  221  YRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1777190600


Query= TCONS_00030106

Length=1346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  188     7e-55
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            184     1e-52


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 188 bits (480),  Expect = 7e-55, Method: Composition-based stats.
 Identities = 81/255 (32%), Positives = 116/255 (45%), Gaps = 45/255 (18%)

Query  37   RDEKSGEG---RVVKSSAKDVAELKDYTVAVKQIKLADLPKSELRVIMLEIDLLKNLDHP  93
               K G G    V K  AK         VA+K+IK   + K + + I+ EI +LK L+HP
Sbjct  3    VLRKLGSGSFGTVYK--AKHRD--TGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHP  58

Query  94   NIVKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQG  153
            NIV+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL       
Sbjct  59   NIVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL-------  111

Query  154  VIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASD  213
                           E    L              ++ VGTP++MAPEV+  +      D
Sbjct  112  ---------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVD  142

Query  214  IWSLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDP  271
            +WSLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP
Sbjct  143  VWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDP  202

Query  272  NLRVSARKLLKHPWI  286
            + R++A + L+HPW 
Sbjct  203  SKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 184 bits (469),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 117/258 (45%), Gaps = 12/258 (5%)

Query  36   KRDEKSGEG---RVVKSSAKDVAELKDYTVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  92
               EK GEG    V K + K   E     VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  93   PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  151
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  152  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  206
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  207  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  265
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  266  CFQKDPNLRVSARKLLKH  283
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1717996800


Query= TCONS_00034790

Length=430


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 521459360


Query= TCONS_00034791

Length=786


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1006965184


Query= TCONS_00034792

Length=955
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  219     4e-66
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            196     2e-57


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 219 bits (559),  Expect = 4e-66, Method: Composition-based stats.
 Identities = 85/253 (34%), Positives = 128/253 (51%), Gaps = 38/253 (15%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNI  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  120  VKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVI  179
            V+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL---------  111

Query  180  HRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIW  239
                         E    L              ++ VGTP++MAPEV+  +      D+W
Sbjct  112  -------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVDVW  144

Query  240  SLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNL  297
            SLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP+ 
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  298  RVSARKLLKHPWI  310
            R++A + L+HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 196 bits (501),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 79/258 (31%), Positives = 121/258 (47%), Gaps = 13/258 (5%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  117  PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  175
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  176  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  230
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  231  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  289
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  290  CFQKDPNLRVSARKLLKH  307
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1216237484


Query= TCONS_00034793

Length=1106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  166     4e-47
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            161     6e-45


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 166 bits (422),  Expect = 4e-47, Method: Composition-based stats.
 Identities = 81/292 (28%), Positives = 115/292 (39%), Gaps = 82/292 (28%)

Query  37   RDEKSGEG---RVVKSSAKDVAELKDYTVAVKQIKLADLPKSELRVIMLEIDLLKNLDVR  93
               K G G    V K  AK         VA+K+IK   + K + + I+ EI +LK L   
Sbjct  3    VLRKLGSGSFGTVYK--AKHRD--TGKIVAIKKIKKEKIKKKKDKNILREIKILKKL---  55

Query  94   LRYNKHSRPTELTEWLQHPNIVKYHGFVKSAETLNIILEYVSSSTDRLSIGGANKRRYCE  153
                             HPNIV+ +   +  + L ++LEY                   E
Sbjct  56   ----------------NHPNIVRLYDAFEDKDNLYLVLEY------------------VE  81

Query  154  NGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVIHRDIKGANILTTKEGLVKLAD  213
             GSL  +    G F E      M Q+L GL                      E    L  
Sbjct  82   GGSLFDLLSEKGAFSEREAKFIMKQILEGL----------------------ESGSSL--  117

Query  214  FGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIWSLGCTVIELLEGKPPYYNLQP  273
                        ++ VGTP++MAPEV+  +      D+WSLGC + ELL GKPP+  +  
Sbjct  118  ------------TTFVGTPWYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGING  165

Query  274  MPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNLRVSARKLLKHPWI  323
                  I++     P LP   S   KD L +  +KDP+ R++A + L+HPW 
Sbjct  166  NEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 161 bits (409),  Expect = 6e-45, Method: Composition-based stats.
 Identities = 76/295 (26%), Positives = 117/295 (40%), Gaps = 49/295 (17%)

Query  36   KRDEKSGEG---RVVKSSAKDVAELKDYTVAVKQIKLADLPKSELRVIMLEIDLLKNLDV  92
               EK GEG    V K + K   E     VAVK +K     + E    + E  ++K LD 
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLD-  59

Query  93   RLRYNKHSRPTELTEWLQHPNIVKYHGFVKSAETLNIILEYVSSSTDRLSIGGANKRRYC  152
                              HPNIVK  G     E L I+ EY                   
Sbjct  60   ------------------HPNIVKLLGVCTQGEPLYIVTEY------------------M  83

Query  153  ENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVIHRDIKGANILTTKEGLVKL  211
              G L   + K+  +     +     Q+  G+ YL  +  +HRD+   N L ++  +VK+
Sbjct  84   PGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKI  143

Query  212  ADFGVASRTTGLSESSVVGT----PY-WMAPEVIELSGATTASDIWSLGCTVIELLE-GK  265
            +DFG+ SR     +          P  WMAPE ++    T+ SD+WS G  + E+   G+
Sbjct  144  SDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGE  202

Query  266  PPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQCFQKDPNLRVSARKLLKH  320
             PY  +     L  + +    P P+     + D + QC+  DP  R +  +L++ 
Sbjct  203  QPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1408804142


Query= TCONS_00034794

Length=955
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  219     4e-66
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            196     2e-57


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 219 bits (559),  Expect = 4e-66, Method: Composition-based stats.
 Identities = 85/253 (34%), Positives = 128/253 (51%), Gaps = 38/253 (15%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNI  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  120  VKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVI  179
            V+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL---------  111

Query  180  HRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIW  239
                         E    L              ++ VGTP++MAPEV+  +      D+W
Sbjct  112  -------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVDVW  144

Query  240  SLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNL  297
            SLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP+ 
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  298  RVSARKLLKHPWI  310
            R++A + L+HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 196 bits (501),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 79/258 (31%), Positives = 121/258 (47%), Gaps = 13/258 (5%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  117  PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  175
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  176  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  230
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  231  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  289
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  290  CFQKDPNLRVSARKLLKH  307
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1216237484


Query= TCONS_00030108

Length=806


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1036068224


Query= TCONS_00030109

Length=1354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  219     2e-65
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            196     5e-57


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 219 bits (559),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 85/253 (34%), Positives = 128/253 (51%), Gaps = 38/253 (15%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNI  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  120  VKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVI  179
            V+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL---------  111

Query  180  HRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIW  239
                         E    L              ++ VGTP++MAPEV+  +      D+W
Sbjct  112  -------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVDVW  144

Query  240  SLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNL  297
            SLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP+ 
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  298  RVSARKLLKHPWI  310
            R++A + L+HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 196 bits (501),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 79/258 (31%), Positives = 121/258 (47%), Gaps = 13/258 (5%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  117  PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  175
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  176  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  230
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  231  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  289
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  290  CFQKDPNLRVSARKLLKH  307
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1729009600


Query= TCONS_00034795

Length=955
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  219     4e-66
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            196     2e-57


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 219 bits (559),  Expect = 4e-66, Method: Composition-based stats.
 Identities = 85/253 (34%), Positives = 128/253 (51%), Gaps = 38/253 (15%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNI  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  120  VKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVI  179
            V+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL---------  111

Query  180  HRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIW  239
                         E    L              ++ VGTP++MAPEV+  +      D+W
Sbjct  112  -------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVDVW  144

Query  240  SLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNL  297
            SLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP+ 
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  298  RVSARKLLKHPWI  310
            R++A + L+HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 196 bits (501),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 79/258 (31%), Positives = 121/258 (47%), Gaps = 13/258 (5%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  117  PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  175
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  176  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  230
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  231  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  289
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  290  CFQKDPNLRVSARKLLKH  307
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1216237484


Query= TCONS_00034796

Length=888
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  219     2e-66
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            196     1e-57


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 219 bits (559),  Expect = 2e-66, Method: Composition-based stats.
 Identities = 85/253 (34%), Positives = 128/253 (51%), Gaps = 38/253 (15%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNI  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  120  VKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVI  179
            V+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL---------  111

Query  180  HRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIW  239
                         E    L              ++ VGTP++MAPEV+  +      D+W
Sbjct  112  -------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVDVW  144

Query  240  SLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNL  297
            SLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP+ 
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  298  RVSARKLLKHPWI  310
            R++A + L+HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 196 bits (501),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 79/258 (31%), Positives = 121/258 (47%), Gaps = 13/258 (5%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  117  PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  175
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  176  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  230
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  231  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  289
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  290  CFQKDPNLRVSARKLLKH  307
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1138362602


Query= TCONS_00034797

Length=1073
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  219     8e-66
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            196     3e-57


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 219 bits (559),  Expect = 8e-66, Method: Composition-based stats.
 Identities = 85/253 (34%), Positives = 128/253 (51%), Gaps = 38/253 (15%)

Query  60   YQLGDCLGRGAFGSVYRALNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDHPNI  119
            Y++   LG G+FG+VY+A + +TG+ VA+K+IK   + K + + I+ EI +LK L+HPNI
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNI  60

Query  120  VKYHGFVKSAETLNIILEYCENGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVI  179
            V+ +   +  + L ++LEY E GSL  +    G F E      M Q+L GL         
Sbjct  61   VRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL---------  111

Query  180  HRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIW  239
                         E    L              ++ VGTP++MAPEV+  +      D+W
Sbjct  112  -------------ESGSSL--------------TTFVGTPWYMAPEVLGGNPYGPKVDVW  144

Query  240  SLGCTVIELLEGKPPYYNLQPMPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNL  297
            SLGC + ELL GKPP+  +        I++     P LP   S   KD L +  +KDP+ 
Sbjct  145  SLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSK  204

Query  298  RVSARKLLKHPWI  310
            R++A + L+HPW 
Sbjct  205  RLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 196 bits (501),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 79/258 (31%), Positives = 121/258 (47%), Gaps = 13/258 (5%)

Query  61   QLGDCLGRGAFGSVYRA----LNWNTGETVAVKQIKLADLPKSELRVIMLEIDLLKNLDH  116
             LG+ LG GAFG VY+        NT   VAVK +K     + E    + E  ++K LDH
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLDH  60

Query  117  PNIVKYHGFVKSAETLNIILEYCENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHE  175
            PNIVK  G     E L I+ EY   G L   + K+  +     +     Q+  G+ YL  
Sbjct  61   PNIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLES  120

Query  176  QGVIHRDIKGANILTTKEGLVKLADFGVASRTTGLSESSVVGT----PY-WMAPEVIELS  230
            +  +HRD+   N L ++  +VK++DFG+ SR     +          P  WMAPE ++  
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDG  179

Query  231  GATTASDIWSLGCTVIELLE-GKPPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQ  289
              T+ SD+WS G  + E+   G+ PY  +     L  + +    P P+     + D + Q
Sbjct  180  KFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQ  239

Query  290  CFQKDPNLRVSARKLLKH  307
            C+  DP  R +  +L++ 
Sbjct  240  CWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1383310852


Query= TCONS_00030110

Length=1367
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  166     5e-47
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            161     8e-45


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 166 bits (422),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 81/292 (28%), Positives = 115/292 (39%), Gaps = 82/292 (28%)

Query  37   RDEKSGEG---RVVKSSAKDVAELKDYTVAVKQIKLADLPKSELRVIMLEIDLLKNLDVR  93
               K G G    V K  AK         VA+K+IK   + K + + I+ EI +LK L   
Sbjct  3    VLRKLGSGSFGTVYK--AKHRD--TGKIVAIKKIKKEKIKKKKDKNILREIKILKKL---  55

Query  94   LRYNKHSRPTELTEWLQHPNIVKYHGFVKSAETLNIILEYVSSSTDRLSIGGANKRRYCE  153
                             HPNIV+ +   +  + L ++LEY                   E
Sbjct  56   ----------------NHPNIVRLYDAFEDKDNLYLVLEY------------------VE  81

Query  154  NGSLHSISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVIHRDIKGANILTTKEGLVKLAD  213
             GSL  +    G F E      M Q+L GL                      E    L  
Sbjct  82   GGSLFDLLSEKGAFSEREAKFIMKQILEGL----------------------ESGSSL--  117

Query  214  FGVASRTTGLSESSVVGTPYWMAPEVIELSGATTASDIWSLGCTVIELLEGKPPYYNLQP  273
                        ++ VGTP++MAPEV+  +      D+WSLGC + ELL GKPP+  +  
Sbjct  118  ------------TTFVGTPWYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGING  165

Query  274  MPALFRIVND--DHPPLPQGASPAVKDFLMQCFQKDPNLRVSARKLLKHPWI  323
                  I++     P LP   S   KD L +  +KDP+ R++A + L+HPW 
Sbjct  166  NEIYELIIDQPYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 161 bits (410),  Expect = 8e-45, Method: Composition-based stats.
 Identities = 76/295 (26%), Positives = 117/295 (40%), Gaps = 49/295 (17%)

Query  36   KRDEKSGEG---RVVKSSAKDVAELKDYTVAVKQIKLADLPKSELRVIMLEIDLLKNLDV  92
               EK GEG    V K + K   E     VAVK +K     + E    + E  ++K LD 
Sbjct  2    TLGEKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLK-EGADEEEREDFLEEASIMKKLD-  59

Query  93   RLRYNKHSRPTELTEWLQHPNIVKYHGFVKSAETLNIILEYVSSSTDRLSIGGANKRRYC  152
                              HPNIVK  G     E L I+ EY                   
Sbjct  60   ------------------HPNIVKLLGVCTQGEPLYIVTEY------------------M  83

Query  153  ENGSLHS-ISKNFGRFPENLVGLYMSQVLHGLLYLHEQGVIHRDIKGANILTTKEGLVKL  211
              G L   + K+  +     +     Q+  G+ YL  +  +HRD+   N L ++  +VK+
Sbjct  84   PGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKI  143

Query  212  ADFGVASRTTGLSESSVVGT----PY-WMAPEVIELSGATTASDIWSLGCTVIELLE-GK  265
            +DFG+ SR     +          P  WMAPE ++    T+ SD+WS G  + E+   G+
Sbjct  144  SDFGL-SRDIYDDDYYRKRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGE  202

Query  266  PPYYNLQPMPALFRIVNDDHPPLPQGASPAVKDFLMQCFQKDPNLRVSARKLLKH  320
             PY  +     L  + +    P P+     + D + QC+  DP  R +  +L++ 
Sbjct  203  QPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.316    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1746905400


Query= TCONS_00034798

Length=420


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0728    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00030111

Length=624
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427143 pfam03109, ABC1, ABC1 family. This family includes ABC...  264     4e-85


>CDD:427143 pfam03109, ABC1, ABC1 family.  This family includes ABC1 from 
yeast and AarF from E. coli. These proteins have a nuclear 
or mitochondrial subcellular location in eukaryotes. The exact 
molecular functions of these proteins is not clear, however 
yeast ABC1 suppresses a cytochrome b mRNA translation defect 
and is essential for the electron transfer in the bc 1 complex 
and E. coli AarF is required for ubiquinone production. 
It has been suggested that members of the ABC1 family are 
novel chaperonins. These proteins are unrelated to the ABC 
transporter proteins.
Length=245

 Score = 264 bits (677),  Expect = 4e-85, Method: Composition-based stats.
 Identities = 102/255 (40%), Positives = 144/255 (56%), Gaps = 14/255 (5%)

Query  216  LQDKCPVSSIESVEEMFVTDTGHRIDELFSSFEPLPIGAASLAQVHIGTLKETGQKVAVK  275
            LQD+ P    E  +++   + G  ++E+F+ F+  PI AAS+AQVH   LK  G++VAVK
Sbjct  2    LQDRAPPFPFEQAKKVIEEELGAPVEEIFAEFDEEPIAAASIAQVHRARLK-DGEEVAVK  60

Query  276  VQHPALAEWVPLDLALTRFTFSMLKRFFPEYD-LEWLSNEMDFSLPQELDFRMEAENARR  334
            VQ P + + +  DL L RF   + KRFFP +  L+WL +E   SLPQELDF  EA NA +
Sbjct  61   VQRPGVKKRIRSDLLLLRFLAKVAKRFFPGFRRLDWLVDEFRKSLPQELDFLREAANAEK  120

Query  335  ASEYFKNHSDAPLVIPEVMW--AQKRILVMEFLSGHRPDDLEYLDSNHIDRDEVSAAFAH  392
              E F +  D  + +P+V W    +R+L ME++ G + DDL+ L    IDR E++     
Sbjct  121  FRENFADDPD--VYVPKVYWELTTERVLTMEYVDGIKIDDLDALSEAGIDRKEIARRLVE  178

Query  393  IFNEMIFGDNAPLHCDPHGGNIAIRKNPNRRRHNFDIILYDHGLYRDIPRDLRRNYAKLW  452
            +F E IF D    H DPH GNI +RK+         I+L D GL   +    RR YA+L 
Sbjct  179  LFLEQIFRDGF-FHADPHPGNILVRKDG-------RIVLLDFGLMGRLDEKFRRLYAELL  230

Query  453  LAVIEADEGRMREYA  467
            LA++  D  R+ E  
Sbjct  231  LALVNRDYKRVAEML  245



Lambda      K        H        a         alpha
   0.321    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 795035696


Query= TCONS_00030112

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427143 pfam03109, ABC1, ABC1 family. This family includes ABC...  262     1e-85


>CDD:427143 pfam03109, ABC1, ABC1 family.  This family includes ABC1 from 
yeast and AarF from E. coli. These proteins have a nuclear 
or mitochondrial subcellular location in eukaryotes. The exact 
molecular functions of these proteins is not clear, however 
yeast ABC1 suppresses a cytochrome b mRNA translation defect 
and is essential for the electron transfer in the bc 1 complex 
and E. coli AarF is required for ubiquinone production. 
It has been suggested that members of the ABC1 family are 
novel chaperonins. These proteins are unrelated to the ABC 
transporter proteins.
Length=245

 Score = 262 bits (673),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 102/255 (40%), Positives = 144/255 (56%), Gaps = 14/255 (5%)

Query  112  LQDKCPVSSIESVEEMFVTDTGHRIDELFSSFEPLPIGAASLAQVHIGTLKETGQKVAVK  171
            LQD+ P    E  +++   + G  ++E+F+ F+  PI AAS+AQVH   LK  G++VAVK
Sbjct  2    LQDRAPPFPFEQAKKVIEEELGAPVEEIFAEFDEEPIAAASIAQVHRARLK-DGEEVAVK  60

Query  172  VQHPALAEWVPLDLALTRFTFSMLKRFFPEYD-LEWLSNEMDFSLPQELDFRMEAENARR  230
            VQ P + + +  DL L RF   + KRFFP +  L+WL +E   SLPQELDF  EA NA +
Sbjct  61   VQRPGVKKRIRSDLLLLRFLAKVAKRFFPGFRRLDWLVDEFRKSLPQELDFLREAANAEK  120

Query  231  ASEYFKNHSDAPLVIPEVMW--AQKRILVMEFLSGHRPDDLEYLDSNHIDRDEVSAAFAH  288
              E F +  D  + +P+V W    +R+L ME++ G + DDL+ L    IDR E++     
Sbjct  121  FRENFADDPD--VYVPKVYWELTTERVLTMEYVDGIKIDDLDALSEAGIDRKEIARRLVE  178

Query  289  IFNEMIFGDNAPLHCDPHGGNIAIRKNPNRRRHNFDIILYDHGLYRDIPRDLRRNYAKLW  348
            +F E IF D    H DPH GNI +RK+         I+L D GL   +    RR YA+L 
Sbjct  179  LFLEQIFRDGF-FHADPHPGNILVRKDG-------RIVLLDFGLMGRLDEKFRRLYAELL  230

Query  349  LAVIEADEGRMREYA  363
            LA++  D  R+ E  
Sbjct  231  LALVNRDYKRVAEML  245



Lambda      K        H        a         alpha
   0.322    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 649534314


Query= TCONS_00034799

Length=608
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427143 pfam03109, ABC1, ABC1 family. This family includes ABC...  247     1e-78


>CDD:427143 pfam03109, ABC1, ABC1 family.  This family includes ABC1 from 
yeast and AarF from E. coli. These proteins have a nuclear 
or mitochondrial subcellular location in eukaryotes. The exact 
molecular functions of these proteins is not clear, however 
yeast ABC1 suppresses a cytochrome b mRNA translation defect 
and is essential for the electron transfer in the bc 1 complex 
and E. coli AarF is required for ubiquinone production. 
It has been suggested that members of the ABC1 family are 
novel chaperonins. These proteins are unrelated to the ABC 
transporter proteins.
Length=245

 Score = 247 bits (632),  Expect = 1e-78, Method: Composition-based stats.
 Identities = 97/253 (38%), Positives = 136/253 (54%), Gaps = 26/253 (10%)

Query  216  LQDKCPVSSIESVEEMFVTDTGHRIDELFSSFEPLPIGAASLAQVHIGTLKETGQKVAVK  275
            LQD+ P    E  +++   + G  ++E+F+ F+  PI AAS+AQVH   LK  G++VAVK
Sbjct  2    LQDRAPPFPFEQAKKVIEEELGAPVEEIFAEFDEEPIAAASIAQVHRARLK-DGEEVAVK  60

Query  276  VQHPALAEWVPLDLALTRFTFSMLKRFFPEYD-LEWLSNEMDFSLPQELDFRMEAENARR  334
            VQ P + + +  DL L RF   + KRFFP +  L+WL +E   SLPQELDF  EA NA +
Sbjct  61   VQRPGVKKRIRSDLLLLRFLAKVAKRFFPGFRRLDWLVDEFRKSLPQELDFLREAANAEK  120

Query  335  A--------------IMW--AQKRILVMEFLSGHRPDDLEYLDSNHIDRDEVSAAFAHIF  378
                           + W    +R+L ME++ G + DDL+ L    IDR E++     +F
Sbjct  121  FRENFADDPDVYVPKVYWELTTERVLTMEYVDGIKIDDLDALSEAGIDRKEIARRLVELF  180

Query  379  NEMIFGDNAPLHCDPHGGNIAIRKNPNRRRHNFDIILYDHGLYRDIPRDLRRNYAKLWLA  438
             E IF D    H DPH GNI +RK+         I+L D GL   +    RR YA+L LA
Sbjct  181  LEQIFRDGF-FHADPHPGNILVRKDG-------RIVLLDFGLMGRLDEKFRRLYAELLLA  232

Query  439  VIEADEGRMREYA  451
            ++  D  R+ E  
Sbjct  233  LVNRDYKRVAEML  245



Lambda      K        H        a         alpha
   0.322    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 771124848


Query= TCONS_00034800

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427143 pfam03109, ABC1, ABC1 family. This family includes ABC...  121     4e-34


>CDD:427143 pfam03109, ABC1, ABC1 family.  This family includes ABC1 from 
yeast and AarF from E. coli. These proteins have a nuclear 
or mitochondrial subcellular location in eukaryotes. The exact 
molecular functions of these proteins is not clear, however 
yeast ABC1 suppresses a cytochrome b mRNA translation defect 
and is essential for the electron transfer in the bc 1 complex 
and E. coli AarF is required for ubiquinone production. 
It has been suggested that members of the ABC1 family are 
novel chaperonins. These proteins are unrelated to the ABC 
transporter proteins.
Length=245

 Score = 121 bits (307),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 42/111 (38%), Positives = 59/111 (53%), Gaps = 8/111 (7%)

Query  5    KRILVMEFLSGHRPDDLEYLDSNHIDRDEVSAAFAHIFNEMIFGDNAPLHCDPHGGNIAI  64
            +R+L ME++ G + DDL+ L    IDR E++     +F E IF D    H DPH GNI +
Sbjct  143  ERVLTMEYVDGIKIDDLDALSEAGIDRKEIARRLVELFLEQIFRDGF-FHADPHPGNILV  201

Query  65   RKNPNRRRHNFDIILYDHGLYRDIPRDLRRNYAKLWLAVIEADEGRMREYA  115
            RK+         I+L D GL   +    RR YA+L LA++  D  R+ E  
Sbjct  202  RKDG-------RIVLLDFGLMGRLDEKFRRLYAELLLALVNRDYKRVAEML  245



Lambda      K        H        a         alpha
   0.324    0.140    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00034801

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427143 pfam03109, ABC1, ABC1 family. This family includes ABC...  146     8e-43


>CDD:427143 pfam03109, ABC1, ABC1 family.  This family includes ABC1 from 
yeast and AarF from E. coli. These proteins have a nuclear 
or mitochondrial subcellular location in eukaryotes. The exact 
molecular functions of these proteins is not clear, however 
yeast ABC1 suppresses a cytochrome b mRNA translation defect 
and is essential for the electron transfer in the bc 1 complex 
and E. coli AarF is required for ubiquinone production. 
It has been suggested that members of the ABC1 family are 
novel chaperonins. These proteins are unrelated to the ABC 
transporter proteins.
Length=245

 Score = 146 bits (372),  Expect = 8e-43, Method: Composition-based stats.
 Identities = 60/139 (43%), Positives = 82/139 (59%), Gaps = 4/139 (3%)

Query  216  LQDKCPVSSIESVEEMFVTDTGHRIDELFSSFEPLPIGAASLAQVHIGTLKETGQKVAVK  275
            LQD+ P    E  +++   + G  ++E+F+ F+  PI AAS+AQVH   LK  G++VAVK
Sbjct  2    LQDRAPPFPFEQAKKVIEEELGAPVEEIFAEFDEEPIAAASIAQVHRARLK-DGEEVAVK  60

Query  276  VQHPALAEWVPLDLALTRFTFSMLKRFFPEYD-LEWLSNEMDFSLPQELDFRMEAENARR  334
            VQ P + + +  DL L RF   + KRFFP +  L+WL +E   SLPQELDF  EA NA +
Sbjct  61   VQRPGVKKRIRSDLLLLRFLAKVAKRFFPGFRRLDWLVDEFRKSLPQELDFLREAANAEK  120

Query  335  ASEYFKNHSD--APLVIPE  351
              E F +  D   P V  E
Sbjct  121  FRENFADDPDVYVPKVYWE  139



Lambda      K        H        a         alpha
   0.320    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00030113

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427143 pfam03109, ABC1, ABC1 family. This family includes ABC...  265     9e-86


>CDD:427143 pfam03109, ABC1, ABC1 family.  This family includes ABC1 from 
yeast and AarF from E. coli. These proteins have a nuclear 
or mitochondrial subcellular location in eukaryotes. The exact 
molecular functions of these proteins is not clear, however 
yeast ABC1 suppresses a cytochrome b mRNA translation defect 
and is essential for the electron transfer in the bc 1 complex 
and E. coli AarF is required for ubiquinone production. 
It has been suggested that members of the ABC1 family are 
novel chaperonins. These proteins are unrelated to the ABC 
transporter proteins.
Length=245

 Score = 265 bits (680),  Expect = 9e-86, Method: Composition-based stats.
 Identities = 102/255 (40%), Positives = 144/255 (56%), Gaps = 14/255 (5%)

Query  216  LQDKCPVSSIESVEEMFVTDTGHRIDELFSSFEPLPIGAASLAQVHIGTLKETGQKVAVK  275
            LQD+ P    E  +++   + G  ++E+F+ F+  PI AAS+AQVH   LK  G++VAVK
Sbjct  2    LQDRAPPFPFEQAKKVIEEELGAPVEEIFAEFDEEPIAAASIAQVHRARLK-DGEEVAVK  60

Query  276  VQHPALAEWVPLDLALTRFTFSMLKRFFPEYD-LEWLSNEMDFSLPQELDFRMEAENARR  334
            VQ P + + +  DL L RF   + KRFFP +  L+WL +E   SLPQELDF  EA NA +
Sbjct  61   VQRPGVKKRIRSDLLLLRFLAKVAKRFFPGFRRLDWLVDEFRKSLPQELDFLREAANAEK  120

Query  335  ASEYFKNHSDAPLVIPEVMW--AQKRILVMEFLSGHRPDDLEYLDSNHIDRDEVSAAFAH  392
              E F +  D  + +P+V W    +R+L ME++ G + DDL+ L    IDR E++     
Sbjct  121  FRENFADDPD--VYVPKVYWELTTERVLTMEYVDGIKIDDLDALSEAGIDRKEIARRLVE  178

Query  393  IFNEMIFGDNAPLHCDPHGGNIAIRKNPNRRRHNFDIILYDHGLYRDIPRDLRRNYAKLW  452
            +F E IF D    H DPH GNI +RK+         I+L D GL   +    RR YA+L 
Sbjct  179  LFLEQIFRDGF-FHADPHPGNILVRKDG-------RIVLLDFGLMGRLDEKFRRLYAELL  230

Query  453  LAVIEADEGRMREYA  467
            LA++  D  R+ E  
Sbjct  231  LALVNRDYKRVAEML  245



Lambda      K        H        a         alpha
   0.321    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 759169424


Query= TCONS_00030114

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427143 pfam03109, ABC1, ABC1 family. This family includes ABC...  264     7e-86


>CDD:427143 pfam03109, ABC1, ABC1 family.  This family includes ABC1 from 
yeast and AarF from E. coli. These proteins have a nuclear 
or mitochondrial subcellular location in eukaryotes. The exact 
molecular functions of these proteins is not clear, however 
yeast ABC1 suppresses a cytochrome b mRNA translation defect 
and is essential for the electron transfer in the bc 1 complex 
and E. coli AarF is required for ubiquinone production. 
It has been suggested that members of the ABC1 family are 
novel chaperonins. These proteins are unrelated to the ABC 
transporter proteins.
Length=245

 Score = 264 bits (677),  Expect = 7e-86, Method: Composition-based stats.
 Identities = 102/255 (40%), Positives = 144/255 (56%), Gaps = 14/255 (5%)

Query  216  LQDKCPVSSIESVEEMFVTDTGHRIDELFSSFEPLPIGAASLAQVHIGTLKETGQKVAVK  275
            LQD+ P    E  +++   + G  ++E+F+ F+  PI AAS+AQVH   LK  G++VAVK
Sbjct  2    LQDRAPPFPFEQAKKVIEEELGAPVEEIFAEFDEEPIAAASIAQVHRARLK-DGEEVAVK  60

Query  276  VQHPALAEWVPLDLALTRFTFSMLKRFFPEYD-LEWLSNEMDFSLPQELDFRMEAENARR  334
            VQ P + + +  DL L RF   + KRFFP +  L+WL +E   SLPQELDF  EA NA +
Sbjct  61   VQRPGVKKRIRSDLLLLRFLAKVAKRFFPGFRRLDWLVDEFRKSLPQELDFLREAANAEK  120

Query  335  ASEYFKNHSDAPLVIPEVMW--AQKRILVMEFLSGHRPDDLEYLDSNHIDRDEVSAAFAH  392
              E F +  D  + +P+V W    +R+L ME++ G + DDL+ L    IDR E++     
Sbjct  121  FRENFADDPD--VYVPKVYWELTTERVLTMEYVDGIKIDDLDALSEAGIDRKEIARRLVE  178

Query  393  IFNEMIFGDNAPLHCDPHGGNIAIRKNPNRRRHNFDIILYDHGLYRDIPRDLRRNYAKLW  452
            +F E IF D    H DPH GNI +RK+         I+L D GL   +    RR YA+L 
Sbjct  179  LFLEQIFRDGF-FHADPHPGNILVRKDG-------RIVLLDFGLMGRLDEKFRRLYAELL  230

Query  453  LAVIEADEGRMREYA  467
            LA++  D  R+ E  
Sbjct  231  LALVNRDYKRVAEML  245



Lambda      K        H        a         alpha
   0.321    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00030115

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        75.0    3e-18


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 75.0 bits (185),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 47/115 (41%), Gaps = 34/115 (30%)

Query  90   LSKVCASTLTYPHEVLRTRLQTQQRTSPAPSPEGISFRGGLDHPQDRGRPPGAASSDGMP  149
            ++   A T+TYP +V++TRLQ Q  +                                  
Sbjct  14   IAGAIAVTVTYPLDVVKTRLQVQGGSG---------------------------------  40

Query  150  NRPRYTGVIRTCQTILREEGWRAFYSGIGVNLFRAVPAAMTTMLTYEYLRKLIGH  204
             + +  G++   + I +EEG R  Y G+  NL R  PAA     TYE L++L+  
Sbjct  41   -KSKGRGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 57.3 bits (139),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 21/62 (34%), Positives = 28/62 (45%), Gaps = 1/62 (2%)

Query  9   SEGYTAPWQYSSTWDAARKMYRIEGIRSFYSGLTPALLGL-THVAIQFPLYEYLKMAFTG  67
            +G +   +     D  +K+Y+ EGIR  Y GL P LL +    AI F  YE LK     
Sbjct  35  VQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94

Query  68  YG  69
             
Sbjct  95  KL  96



Lambda      K        H        a         alpha
   0.319    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00034802

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00030116

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00030117

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        75.0    3e-18


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 75.0 bits (185),  Expect = 3e-18, Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 47/115 (41%), Gaps = 34/115 (30%)

Query  90   LSKVCASTLTYPHEVLRTRLQTQQRTSPAPSPEGISFRGGLDHPQDRGRPPGAASSDGMP  149
            ++   A T+TYP +V++TRLQ Q  +                                  
Sbjct  14   IAGAIAVTVTYPLDVVKTRLQVQGGSG---------------------------------  40

Query  150  NRPRYTGVIRTCQTILREEGWRAFYSGIGVNLFRAVPAAMTTMLTYEYLRKLIGH  204
             + +  G++   + I +EEG R  Y G+  NL R  PAA     TYE L++L+  
Sbjct  41   -KSKGRGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94


 Score = 57.3 bits (139),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 21/62 (34%), Positives = 28/62 (45%), Gaps = 1/62 (2%)

Query  9   SEGYTAPWQYSSTWDAARKMYRIEGIRSFYSGLTPALLGL-THVAIQFPLYEYLKMAFTG  67
            +G +   +     D  +K+Y+ EGIR  Y GL P LL +    AI F  YE LK     
Sbjct  35  VQGGSGKSKGRGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKRLLLK  94

Query  68  YG  69
             
Sbjct  95  KL  96



Lambda      K        H        a         alpha
   0.319    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00030118

Length=93
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460519 pfam02271, UCR_14kD, Ubiquinol-cytochrome C reductase ...  136     4e-44


>CDD:460519 pfam02271, UCR_14kD, Ubiquinol-cytochrome C reductase complex 
14kD subunit.  The ubiquinol-cytochrome C reductase complex 
(cytochrome bc1 complex) is a respiratory multienzyme complex. 
This Pfam family represents the 14kD (or VI) subunit of 
the complex which is not directly involved in electron transfer, 
but has a role in assembly of the complex.
Length=100

 Score = 136 bits (345),  Expect = 4e-44, Method: Composition-based stats.
 Identities = 50/75 (67%), Positives = 60/75 (80%), Gaps = 0/75 (0%)

Query  9   LRFDDLIPEESDVVQTALKRLPPKEAYDRVFRIRRAFQCSVSHTLLPAHEHTKPEEDVEY  68
           LR+DDL+ EE+  VQ AL+RLPPKE+YDRVFRIRRA Q S+ H LLP  + TKPEEDV Y
Sbjct  25  LRYDDLLIEENPDVQEALRRLPPKESYDRVFRIRRALQLSLKHKLLPKEQWTKPEEDVPY  84

Query  69  LSPIIREIERENKER  83
           L+P I E+E+E KER
Sbjct  85  LTPYIDEVEKEAKER  99



Lambda      K        H        a         alpha
   0.322    0.138    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00030119

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00030120

Length=301


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00030122

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00034804

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00030123

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00030125

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 293     8e-95
CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-termina...  63.3    3e-13


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 293 bits (751),  Expect = 8e-95, Method: Composition-based stats.
 Identities = 131/396 (33%), Positives = 196/396 (49%), Gaps = 14/396 (4%)

Query  61   SVSYHQLHTHVADFQAKLARLGVGHGAAVSLALVNSFEFIVSYLATSWQRAIAAPLNPAY  120
             ++Y +L        A L  LGVG G  V++ L NS E++V++LA     A+  PLNP  
Sbjct  21   RLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFLACLKAGAVYVPLNPRL  80

Query  121  KQDEFEFYIEDLSSSLVLIPRGSFAQGGPAVRAGRKYNAAIAECYWDGKEVVLDVKELGK  180
              +E  + +ED  + +++       +         +    +     D       + E  K
Sbjct  81   PAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVLDRDPVLKEEPLPEEAK  140

Query  181  LAGKGSIGILEAQPDDIALVLHTSGTTGRPKAVPLTHKNLVTTMKNIRDTYL----LTPE  236
             A           PDD+A +++TSGTTG+PK V LTH+NLV  + +I+        L P+
Sbjct  141  PADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPD  200

Query  237  DRTYLVMPLFHVHGLLAGLLAPLFSGGSVIVPLKFSA---SEFWQDFVTHQANWYTAVPT  293
            DR    +PLFH  GL  GLL PL +G +V++P  F A   +   +    ++      VPT
Sbjct  201  DRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPT  260

Query  294  IHQILLKTPLPNPI--PRIRFIRSCSSPLSPKTFEDLERTFKAPVLEAYAMTEAAHQMTS  351
            +  +LL+   P       +R + S  +PL P+        F   ++  Y +TE    +T+
Sbjct  261  LLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFRELFGGALVNGYGLTETTGVVTT  320

Query  352  NPLPPGR-RRPGSVG--IGQGVEVKILDQA-GEEVPQGKEGEICVRGENVTKGYLNNPAA  407
                    R  GSVG  +  G EVKI+D   GE VP G+ GE+CVRG  V KGYLN+P  
Sbjct  321  PLPLDEDLRSLGSVGRPLP-GTEVKIVDDETGEPVPPGEPGELCVRGPGVMKGYLNDPEL  379

Query  408  NKSSFTKDGFFRTGDQGKKDRDGYIIITGRIKELIN  443
               +F +DG++RTGD G++D DGY+ I GR K+ I 
Sbjct  380  TAEAFDEDGWYRTGDLGRRDEDGYLEIVGRKKDQIK  415


>CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-terminal domain. 
 This is a small domain that is found C terminal to pfam00501. 
It has a central beta sheet core that is flanked by alpha 
helices.
Length=76

 Score = 63.3 bits (155),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 36/68 (53%), Gaps = 1/68 (1%)

Query  453  ELDNTLLSHPQVAEAVCFAIPDEGHYGEDIGAAVVLKSAGSATEADLKAWMAGKLAKFKT  512
            E+++ L+SHP VAEA    +PDE   GE   A VVLK      E +L A +  +L  +  
Sbjct  1    EVESALVSHPAVAEAAVVGVPDE-LKGEAPVAFVVLKPGVELLEEELVAHVREELGPYAV  59

Query  513  PKQVFQCP  520
            PK+V    
Sbjct  60   PKEVVFVD  67



Lambda      K        H        a         alpha
   0.319    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 663160908


Query= TCONS_00030126

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 292     2e-94
CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-termina...  81.1    1e-19


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 292 bits (750),  Expect = 2e-94, Method: Composition-based stats.
 Identities = 131/396 (33%), Positives = 196/396 (49%), Gaps = 14/396 (4%)

Query  61   SVSYHQLHTHVADFQAKLARLGVGHGAAVSLALVNSFEFIVSYLATSWQRAIAAPLNPAY  120
             ++Y +L        A L  LGVG G  V++ L NS E++V++LA     A+  PLNP  
Sbjct  21   RLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFLACLKAGAVYVPLNPRL  80

Query  121  KQDEFEFYIEDLSSSLVLIPRGSFAQGGPAVRAGRKYNAAIAECYWDGKEVVLDVKELGK  180
              +E  + +ED  + +++       +         +    +     D       + E  K
Sbjct  81   PAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVLDRDPVLKEEPLPEEAK  140

Query  181  LAGKGSIGILEAQPDDIALVLHTSGTTGRPKAVPLTHKNLVTTMKNIRDTYL----LTPE  236
             A           PDD+A +++TSGTTG+PK V LTH+NLV  + +I+        L P+
Sbjct  141  PADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPD  200

Query  237  DRTYLVMPLFHVHGLLAGLLAPLFSGGSVIVPLKFSA---SEFWQDFVTHQANWYTAVPT  293
            DR    +PLFH  GL  GLL PL +G +V++P  F A   +   +    ++      VPT
Sbjct  201  DRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPT  260

Query  294  IHQILLKTPLPNPI--PRIRFIRSCSSPLSPKTFEDLERTFKAPVLEAYAMTEAAHQMTS  351
            +  +LL+   P       +R + S  +PL P+        F   ++  Y +TE    +T+
Sbjct  261  LLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFRELFGGALVNGYGLTETTGVVTT  320

Query  352  NPLPPGR-RRPGSVG--IGQGVEVKILDQA-GEEVPQGKEGEICVRGENVTKGYLNNPAA  407
                    R  GSVG  +  G EVKI+D   GE VP G+ GE+CVRG  V KGYLN+P  
Sbjct  321  PLPLDEDLRSLGSVGRPLP-GTEVKIVDDETGEPVPPGEPGELCVRGPGVMKGYLNDPEL  379

Query  408  NKSSFTKDGFFRTGDQGKKDRDGYIIITGRIKELIN  443
               +F +DG++RTGD G++D DGY+ I GR K+ I 
Sbjct  380  TAEAFDEDGWYRTGDLGRRDEDGYLEIVGRKKDQIK  415


>CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-terminal domain. 
 This is a small domain that is found C terminal to pfam00501. 
It has a central beta sheet core that is flanked by alpha 
helices.
Length=76

 Score = 81.1 bits (201),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query  453  ELDNTLLSHPQVAEAVCFAIPDEGHYGEDIGAAVVLKSAGSATEADLKAWMAGKLAKFKT  512
            E+++ L+SHP VAEA    +PDE   GE   A VVLK      E +L A +  +L  +  
Sbjct  1    EVESALVSHPAVAEAAVVGVPDE-LKGEAPVAFVVLKPGVELLEEELVAHVREELGPYAV  59

Query  513  PKQVWIITQIPKTATGK  529
            PK+V  + ++PKT +GK
Sbjct  60   PKEVVFVDELPKTRSGK  76



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688900030


Query= TCONS_00030124

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 293     2e-95
CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-termina...  62.6    4e-13


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 293 bits (753),  Expect = 2e-95, Method: Composition-based stats.
 Identities = 131/396 (33%), Positives = 196/396 (49%), Gaps = 14/396 (4%)

Query  27   SVSYHQLHTHVADFQAKLARLGVGHGAAVSLALVNSFEFIVSYLATSWQRAIAAPLNPAY  86
             ++Y +L        A L  LGVG G  V++ L NS E++V++LA     A+  PLNP  
Sbjct  21   RLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFLACLKAGAVYVPLNPRL  80

Query  87   KQDEFEFYIEDLSSSLVLIPRGSFAQGGPAVRAGRKYNAAIAECYWDGKEVVLDVKELGK  146
              +E  + +ED  + +++       +         +    +     D       + E  K
Sbjct  81   PAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVLDRDPVLKEEPLPEEAK  140

Query  147  LAGKGSIGILEAQPDDIALVLHTSGTTGRPKAVPLTHKNLVTTMKNIRDTYL----LTPE  202
             A           PDD+A +++TSGTTG+PK V LTH+NLV  + +I+        L P+
Sbjct  141  PADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPD  200

Query  203  DRTYLVMPLFHVHGLLAGLLAPLFSGGSVIVPLKFSA---SEFWQDFVTHQANWYTAVPT  259
            DR    +PLFH  GL  GLL PL +G +V++P  F A   +   +    ++      VPT
Sbjct  201  DRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPT  260

Query  260  IHQILLKTPLPNPI--PRIRFIRSCSSPLSPKTFEDLERTFKAPVLEAYAMTEAAHQMTS  317
            +  +LL+   P       +R + S  +PL P+        F   ++  Y +TE    +T+
Sbjct  261  LLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFRELFGGALVNGYGLTETTGVVTT  320

Query  318  NPLPPGR-RRPGSVG--IGQGVEVKILDQA-GEEVPQGKEGEICVRGENVTKGYLNNPAA  373
                    R  GSVG  +  G EVKI+D   GE VP G+ GE+CVRG  V KGYLN+P  
Sbjct  321  PLPLDEDLRSLGSVGRPLP-GTEVKIVDDETGEPVPPGEPGELCVRGPGVMKGYLNDPEL  379

Query  374  NKSSFTKDGFFRTGDQGKKDRDGYIIITGRIKELIN  409
               +F +DG++RTGD G++D DGY+ I GR K+ I 
Sbjct  380  TAEAFDEDGWYRTGDLGRRDEDGYLEIVGRKKDQIK  415


>CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-terminal domain. 
 This is a small domain that is found C terminal to pfam00501. 
It has a central beta sheet core that is flanked by alpha 
helices.
Length=76

 Score = 62.6 bits (153),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 36/68 (53%), Gaps = 1/68 (1%)

Query  419  ELDNTLLSHPQVAEAVCFAIPDEGHYGEDIGAAVVLKSAGSATEADLKAWMAGKLAKFKT  478
            E+++ L+SHP VAEA    +PDE   GE   A VVLK      E +L A +  +L  +  
Sbjct  1    EVESALVSHPAVAEAAVVGVPDE-LKGEAPVAFVVLKPGVELLEEELVAHVREELGPYAV  59

Query  479  PKQVFQCP  486
            PK+V    
Sbjct  60   PKEVVFVD  67



Lambda      K        H        a         alpha
   0.318    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00030127

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 293     4e-95
CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-termina...  80.7    2e-19


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 293 bits (751),  Expect = 4e-95, Method: Composition-based stats.
 Identities = 131/396 (33%), Positives = 196/396 (49%), Gaps = 14/396 (4%)

Query  27   SVSYHQLHTHVADFQAKLARLGVGHGAAVSLALVNSFEFIVSYLATSWQRAIAAPLNPAY  86
             ++Y +L        A L  LGVG G  V++ L NS E++V++LA     A+  PLNP  
Sbjct  21   RLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWVVAFLACLKAGAVYVPLNPRL  80

Query  87   KQDEFEFYIEDLSSSLVLIPRGSFAQGGPAVRAGRKYNAAIAECYWDGKEVVLDVKELGK  146
              +E  + +ED  + +++       +         +    +     D       + E  K
Sbjct  81   PAEELAYILEDSGAKVLITDDALKLEELLEALGKLEVVKLVLVLDRDPVLKEEPLPEEAK  140

Query  147  LAGKGSIGILEAQPDDIALVLHTSGTTGRPKAVPLTHKNLVTTMKNIRDTYL----LTPE  202
             A           PDD+A +++TSGTTG+PK V LTH+NLV  + +I+        L P+
Sbjct  141  PADVPPPPPPPPDPDDLAYIIYTSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPD  200

Query  203  DRTYLVMPLFHVHGLLAGLLAPLFSGGSVIVPLKFSA---SEFWQDFVTHQANWYTAVPT  259
            DR    +PLFH  GL  GLL PL +G +V++P  F A   +   +    ++      VPT
Sbjct  201  DRVLSTLPLFHDFGLSLGLLGPLLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPT  260

Query  260  IHQILLKTPLPNPI--PRIRFIRSCSSPLSPKTFEDLERTFKAPVLEAYAMTEAAHQMTS  317
            +  +LL+   P       +R + S  +PL P+        F   ++  Y +TE    +T+
Sbjct  261  LLNMLLEAGAPKRALLSSLRLVLSGGAPLPPELARRFRELFGGALVNGYGLTETTGVVTT  320

Query  318  NPLPPGR-RRPGSVG--IGQGVEVKILDQA-GEEVPQGKEGEICVRGENVTKGYLNNPAA  373
                    R  GSVG  +  G EVKI+D   GE VP G+ GE+CVRG  V KGYLN+P  
Sbjct  321  PLPLDEDLRSLGSVGRPLP-GTEVKIVDDETGEPVPPGEPGELCVRGPGVMKGYLNDPEL  379

Query  374  NKSSFTKDGFFRTGDQGKKDRDGYIIITGRIKELIN  409
               +F +DG++RTGD G++D DGY+ I GR K+ I 
Sbjct  380  TAEAFDEDGWYRTGDLGRRDEDGYLEIVGRKKDQIK  415


>CDD:463804 pfam13193, AMP-binding_C, AMP-binding enzyme C-terminal domain. 
 This is a small domain that is found C terminal to pfam00501. 
It has a central beta sheet core that is flanked by alpha 
helices.
Length=76

 Score = 80.7 bits (200),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query  419  ELDNTLLSHPQVAEAVCFAIPDEGHYGEDIGAAVVLKSAGSATEADLKAWMAGKLAKFKT  478
            E+++ L+SHP VAEA    +PDE   GE   A VVLK      E +L A +  +L  +  
Sbjct  1    EVESALVSHPAVAEAAVVGVPDE-LKGEAPVAFVVLKPGVELLEEELVAHVREELGPYAV  59

Query  479  PKQVWIITQIPKTATGK  495
            PK+V  + ++PKT +GK
Sbjct  60   PKEVVFVDELPKTRSGK  76



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 637421786


Query= TCONS_00034805

Length=536


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00030128

Length=504


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00034806

Length=505


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00034807

Length=505


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0765    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00030129

Length=536


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00030130

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00030131

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00030132

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00034808

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00030133

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00034809

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  176     3e-51


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 176 bits (448),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 93/392 (24%), Positives = 165/392 (42%), Gaps = 50/392 (13%)

Query  1    MEQKKFIKYGLTQSALESHVPLIEKEV---LDYLRDSPNFQGSSGRVDI----SAAMAEI  53
             + ++F+    T     S  P +E+E    ++ LR +    G  G +DI      A   +
Sbjct  96   RQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKT---AGEPGVIDITDLLFRAALNV  152

Query  54   ---TIFTAARALQGQEVRSKLTAEFADLYHDLDKGFTPINFMLPWA---PLPHNKKRDAA  107
                +F             +L     +L   L      +  + P     P PH +K   A
Sbjct  153  ICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLKRA  212

Query  108  HARMRSIYVDIITQRRLDGEKDSQKSDMIWNLMNC-----TYKNGQQVPDKEIAHMMITL  162
              +++ +   +I +RR     DS K     + ++        ++G ++ D+E+   ++ L
Sbjct  213  RKKIKDLLDKLIEERR--ETLDSAKKSPR-DFLDALLLAKEEEDGSKLTDEELRATVLEL  269

Query  163  LMAGQHSSSSISAWIMLRLASQPKVLEELYQEQLANLGPAGPDGSLPPLQYKDLDKLPFH  222
              AG  ++SS  +W +  LA  P+V E+L +E    +G            Y DL  +P+ 
Sbjct  270  FFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSP------TYDDLQNMPYL  323

Query  223  QHVIRETLRIHSSIH-SIMRKVKSPLPVPGTPYMIPPGRVLLASPGVTALSDEHFPNAGC  281
              VI+ETLR+H  +   + R+V     +PG  Y+IP G +++ +        E FPN   
Sbjct  324  DAVIKETLRLHPVVPLLLPREVTKDTVIPG--YLIPKGTLVIVNLYALHRDPEVFPNPEE  381

Query  282  WDPHRWENQATKEQENDKVVDYGYGAVSKGTSSPYLPFGAGRHRCIGEKFAYVNLGVILA  341
            +DP R+ +      EN               S  +LPFGAG   C+GE+ A + + + LA
Sbjct  382  FDPERFLD------EN----------GKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLA  425

Query  342  TIVRHLRLFNVDGKKGVPETDYSSLFSGPMKP  373
            T++++  +  +      P+ D +     P KP
Sbjct  426  TLLQNFEVE-LPPGTDPPDIDETPGLLLPPKP  456



Lambda      K        H        a         alpha
   0.318    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00030134

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  176     3e-51


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 176 bits (448),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 93/392 (24%), Positives = 165/392 (42%), Gaps = 50/392 (13%)

Query  1    MEQKKFIKYGLTQSALESHVPLIEKEV---LDYLRDSPNFQGSSGRVDI----SAAMAEI  53
             + ++F+    T     S  P +E+E    ++ LR +    G  G +DI      A   +
Sbjct  96   RQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKT---AGEPGVIDITDLLFRAALNV  152

Query  54   ---TIFTAARALQGQEVRSKLTAEFADLYHDLDKGFTPINFMLPWA---PLPHNKKRDAA  107
                +F             +L     +L   L      +  + P     P PH +K   A
Sbjct  153  ICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLKRA  212

Query  108  HARMRSIYVDIITQRRLDGEKDSQKSDMIWNLMNC-----TYKNGQQVPDKEIAHMMITL  162
              +++ +   +I +RR     DS K     + ++        ++G ++ D+E+   ++ L
Sbjct  213  RKKIKDLLDKLIEERR--ETLDSAKKSPR-DFLDALLLAKEEEDGSKLTDEELRATVLEL  269

Query  163  LMAGQHSSSSISAWIMLRLASQPKVLEELYQEQLANLGPAGPDGSLPPLQYKDLDKLPFH  222
              AG  ++SS  +W +  LA  P+V E+L +E    +G            Y DL  +P+ 
Sbjct  270  FFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSP------TYDDLQNMPYL  323

Query  223  QHVIRETLRIHSSIH-SIMRKVKSPLPVPGTPYMIPPGRVLLASPGVTALSDEHFPNAGC  281
              VI+ETLR+H  +   + R+V     +PG  Y+IP G +++ +        E FPN   
Sbjct  324  DAVIKETLRLHPVVPLLLPREVTKDTVIPG--YLIPKGTLVIVNLYALHRDPEVFPNPEE  381

Query  282  WDPHRWENQATKEQENDKVVDYGYGAVSKGTSSPYLPFGAGRHRCIGEKFAYVNLGVILA  341
            +DP R+ +      EN               S  +LPFGAG   C+GE+ A + + + LA
Sbjct  382  FDPERFLD------EN----------GKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLA  425

Query  342  TIVRHLRLFNVDGKKGVPETDYSSLFSGPMKP  373
            T++++  +  +      P+ D +     P KP
Sbjct  426  TLLQNFEVE-LPPGTDPPDIDETPGLLLPPKP  456



Lambda      K        H        a         alpha
   0.318    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00030135

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  176     3e-51


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 176 bits (448),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 93/392 (24%), Positives = 165/392 (42%), Gaps = 50/392 (13%)

Query  1    MEQKKFIKYGLTQSALESHVPLIEKEV---LDYLRDSPNFQGSSGRVDI----SAAMAEI  53
             + ++F+    T     S  P +E+E    ++ LR +    G  G +DI      A   +
Sbjct  96   RQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKT---AGEPGVIDITDLLFRAALNV  152

Query  54   ---TIFTAARALQGQEVRSKLTAEFADLYHDLDKGFTPINFMLPWA---PLPHNKKRDAA  107
                +F             +L     +L   L      +  + P     P PH +K   A
Sbjct  153  ICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLKRA  212

Query  108  HARMRSIYVDIITQRRLDGEKDSQKSDMIWNLMNC-----TYKNGQQVPDKEIAHMMITL  162
              +++ +   +I +RR     DS K     + ++        ++G ++ D+E+   ++ L
Sbjct  213  RKKIKDLLDKLIEERR--ETLDSAKKSPR-DFLDALLLAKEEEDGSKLTDEELRATVLEL  269

Query  163  LMAGQHSSSSISAWIMLRLASQPKVLEELYQEQLANLGPAGPDGSLPPLQYKDLDKLPFH  222
              AG  ++SS  +W +  LA  P+V E+L +E    +G            Y DL  +P+ 
Sbjct  270  FFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSP------TYDDLQNMPYL  323

Query  223  QHVIRETLRIHSSIH-SIMRKVKSPLPVPGTPYMIPPGRVLLASPGVTALSDEHFPNAGC  281
              VI+ETLR+H  +   + R+V     +PG  Y+IP G +++ +        E FPN   
Sbjct  324  DAVIKETLRLHPVVPLLLPREVTKDTVIPG--YLIPKGTLVIVNLYALHRDPEVFPNPEE  381

Query  282  WDPHRWENQATKEQENDKVVDYGYGAVSKGTSSPYLPFGAGRHRCIGEKFAYVNLGVILA  341
            +DP R+ +      EN               S  +LPFGAG   C+GE+ A + + + LA
Sbjct  382  FDPERFLD------EN----------GKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLA  425

Query  342  TIVRHLRLFNVDGKKGVPETDYSSLFSGPMKP  373
            T++++  +  +      P+ D +     P KP
Sbjct  426  TLLQNFEVE-LPPGTDPPDIDETPGLLLPPKP  456



Lambda      K        H        a         alpha
   0.318    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00034810

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  176     3e-51


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 176 bits (448),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 93/392 (24%), Positives = 165/392 (42%), Gaps = 50/392 (13%)

Query  1    MEQKKFIKYGLTQSALESHVPLIEKEV---LDYLRDSPNFQGSSGRVDI----SAAMAEI  53
             + ++F+    T     S  P +E+E    ++ LR +    G  G +DI      A   +
Sbjct  96   RQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKT---AGEPGVIDITDLLFRAALNV  152

Query  54   ---TIFTAARALQGQEVRSKLTAEFADLYHDLDKGFTPINFMLPWA---PLPHNKKRDAA  107
                +F             +L     +L   L      +  + P     P PH +K   A
Sbjct  153  ICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLKRA  212

Query  108  HARMRSIYVDIITQRRLDGEKDSQKSDMIWNLMNC-----TYKNGQQVPDKEIAHMMITL  162
              +++ +   +I +RR     DS K     + ++        ++G ++ D+E+   ++ L
Sbjct  213  RKKIKDLLDKLIEERR--ETLDSAKKSPR-DFLDALLLAKEEEDGSKLTDEELRATVLEL  269

Query  163  LMAGQHSSSSISAWIMLRLASQPKVLEELYQEQLANLGPAGPDGSLPPLQYKDLDKLPFH  222
              AG  ++SS  +W +  LA  P+V E+L +E    +G            Y DL  +P+ 
Sbjct  270  FFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSP------TYDDLQNMPYL  323

Query  223  QHVIRETLRIHSSIH-SIMRKVKSPLPVPGTPYMIPPGRVLLASPGVTALSDEHFPNAGC  281
              VI+ETLR+H  +   + R+V     +PG  Y+IP G +++ +        E FPN   
Sbjct  324  DAVIKETLRLHPVVPLLLPREVTKDTVIPG--YLIPKGTLVIVNLYALHRDPEVFPNPEE  381

Query  282  WDPHRWENQATKEQENDKVVDYGYGAVSKGTSSPYLPFGAGRHRCIGEKFAYVNLGVILA  341
            +DP R+ +      EN               S  +LPFGAG   C+GE+ A + + + LA
Sbjct  382  FDPERFLD------EN----------GKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLA  425

Query  342  TIVRHLRLFNVDGKKGVPETDYSSLFSGPMKP  373
            T++++  +  +      P+ D +     P KP
Sbjct  426  TLLQNFEVE-LPPGTDPPDIDETPGLLLPPKP  456



Lambda      K        H        a         alpha
   0.318    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00030136

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  176     3e-51


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 176 bits (448),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 93/392 (24%), Positives = 165/392 (42%), Gaps = 50/392 (13%)

Query  1    MEQKKFIKYGLTQSALESHVPLIEKEV---LDYLRDSPNFQGSSGRVDI----SAAMAEI  53
             + ++F+    T     S  P +E+E    ++ LR +    G  G +DI      A   +
Sbjct  96   RQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKT---AGEPGVIDITDLLFRAALNV  152

Query  54   ---TIFTAARALQGQEVRSKLTAEFADLYHDLDKGFTPINFMLPWA---PLPHNKKRDAA  107
                +F             +L     +L   L      +  + P     P PH +K   A
Sbjct  153  ICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLKRA  212

Query  108  HARMRSIYVDIITQRRLDGEKDSQKSDMIWNLMNC-----TYKNGQQVPDKEIAHMMITL  162
              +++ +   +I +RR     DS K     + ++        ++G ++ D+E+   ++ L
Sbjct  213  RKKIKDLLDKLIEERR--ETLDSAKKSPR-DFLDALLLAKEEEDGSKLTDEELRATVLEL  269

Query  163  LMAGQHSSSSISAWIMLRLASQPKVLEELYQEQLANLGPAGPDGSLPPLQYKDLDKLPFH  222
              AG  ++SS  +W +  LA  P+V E+L +E    +G            Y DL  +P+ 
Sbjct  270  FFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSP------TYDDLQNMPYL  323

Query  223  QHVIRETLRIHSSIH-SIMRKVKSPLPVPGTPYMIPPGRVLLASPGVTALSDEHFPNAGC  281
              VI+ETLR+H  +   + R+V     +PG  Y+IP G +++ +        E FPN   
Sbjct  324  DAVIKETLRLHPVVPLLLPREVTKDTVIPG--YLIPKGTLVIVNLYALHRDPEVFPNPEE  381

Query  282  WDPHRWENQATKEQENDKVVDYGYGAVSKGTSSPYLPFGAGRHRCIGEKFAYVNLGVILA  341
            +DP R+ +      EN               S  +LPFGAG   C+GE+ A + + + LA
Sbjct  382  FDPERFLD------EN----------GKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLA  425

Query  342  TIVRHLRLFNVDGKKGVPETDYSSLFSGPMKP  373
            T++++  +  +      P+ D +     P KP
Sbjct  426  TLLQNFEVE-LPPGTDPPDIDETPGLLLPPKP  456



Lambda      K        H        a         alpha
   0.318    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00030137

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395594 pfam00733, Asn_synthase, Asparagine synthase. This fam...  303     2e-100
CDD:433289 pfam13537, GATase_7, Glutamine amidotransferase domain...  175     5e-53 
CDD:433279 pfam13522, GATase_6, Glutamine amidotransferase domain...  132     6e-37 


>CDD:395594 pfam00733, Asn_synthase, Asparagine synthase.  This family is 
always found associated with pfam00310. Members of this family 
catalyze the conversion of aspartate to asparagine.
Length=279

 Score = 303 bits (779),  Expect = 2e-100, Method: Composition-based stats.
 Identities = 120/338 (36%), Positives = 165/338 (49%), Gaps = 65/338 (19%)

Query  213  IRATLEKSVRKRLMAEVPYGVLLSGGLDSSLVASIAQRETLRMQETAKNALVDQTGASDL  272
            +R  LE +V +RL A+VP G  LSGGLDSS +A++A R++                    
Sbjct  2    LRELLEDAVARRLRADVPVGAFLSGGLDSSSIAALAARQSPS------------------  43

Query  273  VGIDDTNELSTVTTFQQLHSFSIGLPGA--PDTEAALEVARFLGTKHHAFTFTIEEGLDA  330
                             LH+FSIG  G    +   A EVA  LGT HH    T E+ LDA
Sbjct  44   ----------------PLHTFSIGFEGRGYDEAPYAREVAEHLGTDHHELVVTPEDLLDA  87

Query  331  LSDVIYHLETYDVTTIRASTPMYLLSRKIKAMGVKMVLSGEGSDEIFGGYLYFHAAPNKE  390
            L DVI+HL+        ++ P+YLLSR  +  GVK+VLSGEG+DE+FGGY ++      +
Sbjct  88   LPDVIWHLDE--PFADPSAIPLYLLSRLARRKGVKVVLSGEGADELFGGYPFYKGE---D  142

Query  391  EFHKETVRRVKNLHLADCLRANKSTSAWGLEARVPFLDKEFLEAAMGVDPQEKMITKERI  450
               +     +K L   D LRA++ + A GLE RVPFLD   +E A+ + P+ K+  +  I
Sbjct  143  PLRRMLYLDLKTLLPGDLLRADRMSMAHGLEVRVPFLDHRLVEYALRLPPELKL--RGGI  200

Query  451  EKYILRKAFDTSDEPDTKPYLPEKILWRQKEQFSDGVGYSWIDG-LKDQAEKQITDEMMK  509
            EKYILR+A         +  LP++IL R KE FS  VG   + G L++ AE  ++D    
Sbjct  201  EKYILREAL--------EGILPDEILERPKEGFSAPVGDWKLRGPLRELAEDLLSDS---  249

Query  510  NPKPEWGNDIPDTKEAYWYRMMFDEHFPPTCASTVERW  547
                         KE    R    E      A  +E W
Sbjct  250  ----------RLAKEGLLDREAVRELLDEHLAGMLELW  277


>CDD:433289 pfam13537, GATase_7, Glutamine amidotransferase domain.  This 
domain is a class-II glutamine amidotransferase domain found 
in a variety of enzymes such as asparagine synthetase and 
glutamine-fructose-6-phosphate transaminase.
Length=123

 Score = 175 bits (445),  Expect = 5e-53, Method: Composition-based stats.
 Identities = 55/125 (44%), Positives = 77/125 (62%), Gaps = 5/125 (4%)

Query  47   HERLCIVGVDSGAQPLVND-DGTIALAVNGEIYNHRILRKGLKKQ-YNFKTHSDCEVVIP  104
            H RL I+ ++ GAQP+V+  DG   +  NGEIYN+R LR  L+ + Y F+THSD EV++ 
Sbjct  1    HRRLSIIDLEGGAQPMVSSEDGRYVIVFNGEIYNYRELRAELEAKGYRFRTHSDTEVILH  60

Query  105  LYM-EHGLDAPKHLDGMFSWVLYDKKEDRVVAARDPIGIISFYIGWSSETPGAVYFASEL  163
            LY  E G D    L+GMF++ ++D++  R+  ARD  GI   Y G      G + FASEL
Sbjct  61   LYEAEWGEDCVDRLNGMFAFAIWDRRRQRLFLARDRFGIKPLYYGRDDG--GRLLFASEL  118

Query  164  KSLHP  168
            K+L  
Sbjct  119  KALLA  123


>CDD:433279 pfam13522, GATase_6, Glutamine amidotransferase domain.  This 
domain is a class-II glutamine amidotransferase domain found 
in a variety of enzymes, such as asparagine synthetase and 
glutamine--fructose-6-phosphate transaminase.
Length=130

 Score = 132 bits (333),  Expect = 6e-37, Method: Composition-based stats.
 Identities = 55/133 (41%), Positives = 78/133 (59%), Gaps = 5/133 (4%)

Query  32   PDWSGNWSSEGTILAHERLCIVGV-DSGAQPLVNDDGTIALAVNGEIYNHRILRKGLK-K  89
            PD+SG W   G  L H RL IV + D+G QP+++ DG + L  NGEIYN+  LR+ L   
Sbjct  1    PDFSGIWVEGGVALGHVRLAIVDLPDAGNQPMLSRDGRLVLVHNGEIYNYGELREELADL  60

Query  90   QYNFKTHSDCEVVIPLYMEHGLDAPKHLDGMFSWVLYDKKEDRVVAARDPIGIISFYIGW  149
             + F++ SD EV++ LY E G D  + L GMF++ ++D++   +  ARD +GI   Y G 
Sbjct  61   GHAFRSRSDTEVLLALYEEWGEDCLERLRGMFAFAIWDRRRRTLFLARDRLGIKPLYYGI  120

Query  150  SSETPGAVYFASE  162
                 G   FASE
Sbjct  121  LG---GGFVFASE  130



Lambda      K        H        a         alpha
   0.318    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 718819868


Query= TCONS_00034811

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395594 pfam00733, Asn_synthase, Asparagine synthase. This fam...  302     1e-99
CDD:433289 pfam13537, GATase_7, Glutamine amidotransferase domain...  161     1e-47
CDD:433279 pfam13522, GATase_6, Glutamine amidotransferase domain...  109     8e-29


>CDD:395594 pfam00733, Asn_synthase, Asparagine synthase.  This family is 
always found associated with pfam00310. Members of this family 
catalyze the conversion of aspartate to asparagine.
Length=279

 Score = 302 bits (776),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 120/338 (36%), Positives = 165/338 (49%), Gaps = 65/338 (19%)

Query  223  IRATLEKSVRKRLMAEVPYGVLLSGGLDSSLVASIAQRETLRMQETAKNALVDQTGASDL  282
            +R  LE +V +RL A+VP G  LSGGLDSS +A++A R++                    
Sbjct  2    LRELLEDAVARRLRADVPVGAFLSGGLDSSSIAALAARQSPS------------------  43

Query  283  VGIDDTNELSTVTTFQQLHSFSIGLPGA--PDTEAALEVARFLGTKHHAFTFTIEEGLDA  340
                             LH+FSIG  G    +   A EVA  LGT HH    T E+ LDA
Sbjct  44   ----------------PLHTFSIGFEGRGYDEAPYAREVAEHLGTDHHELVVTPEDLLDA  87

Query  341  LSDVIYHLETYDVTTIRASTPMYLLSRKIKAMGVKMVLSGEGSDEIFGGYLYFHAAPNKE  400
            L DVI+HL+        ++ P+YLLSR  +  GVK+VLSGEG+DE+FGGY ++      +
Sbjct  88   LPDVIWHLDE--PFADPSAIPLYLLSRLARRKGVKVVLSGEGADELFGGYPFYKGE---D  142

Query  401  EFHKETVRRVKNLHLADCLRANKSTSAWGLEARVPFLDKEFLEAAMGVDPQEKMITKERI  460
               +     +K L   D LRA++ + A GLE RVPFLD   +E A+ + P+ K+  +  I
Sbjct  143  PLRRMLYLDLKTLLPGDLLRADRMSMAHGLEVRVPFLDHRLVEYALRLPPELKL--RGGI  200

Query  461  EKYILRKAFDTSDEPDTKPYLPEKILWRQKEQFSDGVGYSWIDG-LKDQAEKQITDEMMK  519
            EKYILR+A         +  LP++IL R KE FS  VG   + G L++ AE  ++D    
Sbjct  201  EKYILREAL--------EGILPDEILERPKEGFSAPVGDWKLRGPLRELAEDLLSDS---  249

Query  520  NPKPEWGNDIPDTKEAYWYRMMFDEHFPPTCASTVERW  557
                         KE    R    E      A  +E W
Sbjct  250  ----------RLAKEGLLDREAVRELLDEHLAGMLELW  277


>CDD:433289 pfam13537, GATase_7, Glutamine amidotransferase domain.  This 
domain is a class-II glutamine amidotransferase domain found 
in a variety of enzymes such as asparagine synthetase and 
glutamine-fructose-6-phosphate transaminase.
Length=123

 Score = 161 bits (409),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 51/116 (44%), Positives = 71/116 (61%), Gaps = 5/116 (4%)

Query  66   DSGAQPLVND-DGTIALAVNGEIYNHRILRKGLKKQ-YNFKTHSDCEVVIPLYM-EHGLD  122
            + GAQP+V+  DG   +  NGEIYN+R LR  L+ + Y F+THSD EV++ LY  E G D
Sbjct  10   EGGAQPMVSSEDGRYVIVFNGEIYNYRELRAELEAKGYRFRTHSDTEVILHLYEAEWGED  69

Query  123  APKHLDGMFSWVLYDKKEDRVVAARDPIGIISFYIGWSSETPGAVYFASELKSLHP  178
                L+GMF++ ++D++  R+  ARD  GI   Y G      G + FASELK+L  
Sbjct  70   CVDRLNGMFAFAIWDRRRQRLFLARDRFGIKPLYYGRDDG--GRLLFASELKALLA  123


>CDD:433279 pfam13522, GATase_6, Glutamine amidotransferase domain.  This 
domain is a class-II glutamine amidotransferase domain found 
in a variety of enzymes, such as asparagine synthetase and 
glutamine--fructose-6-phosphate transaminase.
Length=130

 Score = 109 bits (274),  Expect = 8e-29, Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 4/110 (4%)

Query  64   TADSGAQPLVNDDGTIALAVNGEIYNHRILRKGLK-KQYNFKTHSDCEVVIPLYMEHGLD  122
              D+G QP+++ DG + L  NGEIYN+  LR+ L    + F++ SD EV++ LY E G D
Sbjct  24   LPDAGNQPMLSRDGRLVLVHNGEIYNYGELREELADLGHAFRSRSDTEVLLALYEEWGED  83

Query  123  APKHLDGMFSWVLYDKKEDRVVAARDPIGIISFYIGWSSETPGAVYFASE  172
              + L GMF++ ++D++   +  ARD +GI   Y G      G   FASE
Sbjct  84   CLERLRGMFAFAIWDRRRRTLFLARDRLGIKPLYYGILG---GGFVFASE  130



Lambda      K        H        a         alpha
   0.319    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 763652708


Query= TCONS_00030138

Length=639
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395594 pfam00733, Asn_synthase, Asparagine synthase. This fam...  304     1e-99
CDD:433289 pfam13537, GATase_7, Glutamine amidotransferase domain...  161     2e-47
CDD:433279 pfam13522, GATase_6, Glutamine amidotransferase domain...  109     8e-29


>CDD:395594 pfam00733, Asn_synthase, Asparagine synthase.  This family is 
always found associated with pfam00310. Members of this family 
catalyze the conversion of aspartate to asparagine.
Length=279

 Score = 304 bits (780),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 120/338 (36%), Positives = 165/338 (49%), Gaps = 65/338 (19%)

Query  259  IRATLEKSVRKRLMAEVPYGVLLSGGLDSSLVASIAQRETLRMQETAKNALVDQTGASDL  318
            +R  LE +V +RL A+VP G  LSGGLDSS +A++A R++                    
Sbjct  2    LRELLEDAVARRLRADVPVGAFLSGGLDSSSIAALAARQSPS------------------  43

Query  319  VGIDDTNELSTVTTFQQLHSFSIGLPGA--PDTEAALEVARFLGTKHHAFTFTIEEGLDA  376
                             LH+FSIG  G    +   A EVA  LGT HH    T E+ LDA
Sbjct  44   ----------------PLHTFSIGFEGRGYDEAPYAREVAEHLGTDHHELVVTPEDLLDA  87

Query  377  LSDVIYHLETYDVTTIRASTPMYLLSRKIKAMGVKMVLSGEGSDEIFGGYLYFHAAPNKE  436
            L DVI+HL+        ++ P+YLLSR  +  GVK+VLSGEG+DE+FGGY ++      +
Sbjct  88   LPDVIWHLDE--PFADPSAIPLYLLSRLARRKGVKVVLSGEGADELFGGYPFYKGE---D  142

Query  437  EFHKETVRRVKNLHLADCLRANKSTSAWGLEARVPFLDKEFLEAAMGVDPQEKMITKERI  496
               +     +K L   D LRA++ + A GLE RVPFLD   +E A+ + P+ K+  +  I
Sbjct  143  PLRRMLYLDLKTLLPGDLLRADRMSMAHGLEVRVPFLDHRLVEYALRLPPELKL--RGGI  200

Query  497  EKYILRKAFDTSDEPDTKPYLPEKILWRQKEQFSDGVGYSWIDG-LKDQAEKQITDEMMK  555
            EKYILR+A         +  LP++IL R KE FS  VG   + G L++ AE  ++D    
Sbjct  201  EKYILREAL--------EGILPDEILERPKEGFSAPVGDWKLRGPLRELAEDLLSDS---  249

Query  556  NPKPEWGNDIPDTKEAYWYRMMFDEHFPPTCASTVERW  593
                         KE    R    E      A  +E W
Sbjct  250  ----------RLAKEGLLDREAVRELLDEHLAGMLELW  277


>CDD:433289 pfam13537, GATase_7, Glutamine amidotransferase domain.  This 
domain is a class-II glutamine amidotransferase domain found 
in a variety of enzymes such as asparagine synthetase and 
glutamine-fructose-6-phosphate transaminase.
Length=123

 Score = 161 bits (409),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 51/116 (44%), Positives = 71/116 (61%), Gaps = 5/116 (4%)

Query  102  DSGAQPLVND-DGTIALAVNGEIYNHRILRKGLKKQ-YNFKTHSDCEVVIPLYM-EHGLD  158
            + GAQP+V+  DG   +  NGEIYN+R LR  L+ + Y F+THSD EV++ LY  E G D
Sbjct  10   EGGAQPMVSSEDGRYVIVFNGEIYNYRELRAELEAKGYRFRTHSDTEVILHLYEAEWGED  69

Query  159  APKHLDGMFSWVLYDKKEDRVVAARDPIGIISFYIGWSSETPGAVYFASELKSLHP  214
                L+GMF++ ++D++  R+  ARD  GI   Y G      G + FASELK+L  
Sbjct  70   CVDRLNGMFAFAIWDRRRQRLFLARDRFGIKPLYYGRDDG--GRLLFASELKALLA  123


>CDD:433279 pfam13522, GATase_6, Glutamine amidotransferase domain.  This 
domain is a class-II glutamine amidotransferase domain found 
in a variety of enzymes, such as asparagine synthetase and 
glutamine--fructose-6-phosphate transaminase.
Length=130

 Score = 109 bits (275),  Expect = 8e-29, Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 4/110 (4%)

Query  100  TADSGAQPLVNDDGTIALAVNGEIYNHRILRKGLK-KQYNFKTHSDCEVVIPLYMEHGLD  158
              D+G QP+++ DG + L  NGEIYN+  LR+ L    + F++ SD EV++ LY E G D
Sbjct  24   LPDAGNQPMLSRDGRLVLVHNGEIYNYGELREELADLGHAFRSRSDTEVLLALYEEWGED  83

Query  159  APKHLDGMFSWVLYDKKEDRVVAARDPIGIISFYIGWSSETPGAVYFASE  208
              + L GMF++ ++D++   +  ARD +GI   Y G      G   FASE
Sbjct  84   CLERLRGMFAFAIWDRRRRTLFLARDRLGIKPLYYGILG---GGFVFASE  130



Lambda      K        H        a         alpha
   0.319    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 805235340


Query= TCONS_00030140

Length=619
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395594 pfam00733, Asn_synthase, Asparagine synthase. This fam...  304     5e-100
CDD:433289 pfam13537, GATase_7, Glutamine amidotransferase domain...  161     1e-47 
CDD:433279 pfam13522, GATase_6, Glutamine amidotransferase domain...  109     6e-29 


>CDD:395594 pfam00733, Asn_synthase, Asparagine synthase.  This family is 
always found associated with pfam00310. Members of this family 
catalyze the conversion of aspartate to asparagine.
Length=279

 Score = 304 bits (780),  Expect = 5e-100, Method: Composition-based stats.
 Identities = 120/338 (36%), Positives = 165/338 (49%), Gaps = 65/338 (19%)

Query  259  IRATLEKSVRKRLMAEVPYGVLLSGGLDSSLVASIAQRETLRMQETAKNALVDQTGASDL  318
            +R  LE +V +RL A+VP G  LSGGLDSS +A++A R++                    
Sbjct  2    LRELLEDAVARRLRADVPVGAFLSGGLDSSSIAALAARQSPS------------------  43

Query  319  VGIDDTNELSTVTTFQQLHSFSIGLPGA--PDTEAALEVARFLGTKHHAFTFTIEEGLDA  376
                             LH+FSIG  G    +   A EVA  LGT HH    T E+ LDA
Sbjct  44   ----------------PLHTFSIGFEGRGYDEAPYAREVAEHLGTDHHELVVTPEDLLDA  87

Query  377  LSDVIYHLETYDVTTIRASTPMYLLSRKIKAMGVKMVLSGEGSDEIFGGYLYFHAAPNKE  436
            L DVI+HL+        ++ P+YLLSR  +  GVK+VLSGEG+DE+FGGY ++      +
Sbjct  88   LPDVIWHLDE--PFADPSAIPLYLLSRLARRKGVKVVLSGEGADELFGGYPFYKGE---D  142

Query  437  EFHKETVRRVKNLHLADCLRANKSTSAWGLEARVPFLDKEFLEAAMGVDPQEKMITKERI  496
               +     +K L   D LRA++ + A GLE RVPFLD   +E A+ + P+ K+  +  I
Sbjct  143  PLRRMLYLDLKTLLPGDLLRADRMSMAHGLEVRVPFLDHRLVEYALRLPPELKL--RGGI  200

Query  497  EKYILRKAFDTSDEPDTKPYLPEKILWRQKEQFSDGVGYSWIDG-LKDQAEKQITDEMMK  555
            EKYILR+A         +  LP++IL R KE FS  VG   + G L++ AE  ++D    
Sbjct  201  EKYILREAL--------EGILPDEILERPKEGFSAPVGDWKLRGPLRELAEDLLSDS---  249

Query  556  NPKPEWGNDIPDTKEAYWYRMMFDEHFPPTCASTVERW  593
                         KE    R    E      A  +E W
Sbjct  250  ----------RLAKEGLLDREAVRELLDEHLAGMLELW  277


>CDD:433289 pfam13537, GATase_7, Glutamine amidotransferase domain.  This 
domain is a class-II glutamine amidotransferase domain found 
in a variety of enzymes such as asparagine synthetase and 
glutamine-fructose-6-phosphate transaminase.
Length=123

 Score = 161 bits (409),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 51/116 (44%), Positives = 71/116 (61%), Gaps = 5/116 (4%)

Query  102  DSGAQPLVND-DGTIALAVNGEIYNHRILRKGLKKQ-YNFKTHSDCEVVIPLYM-EHGLD  158
            + GAQP+V+  DG   +  NGEIYN+R LR  L+ + Y F+THSD EV++ LY  E G D
Sbjct  10   EGGAQPMVSSEDGRYVIVFNGEIYNYRELRAELEAKGYRFRTHSDTEVILHLYEAEWGED  69

Query  159  APKHLDGMFSWVLYDKKEDRVVAARDPIGIISFYIGWSSETPGAVYFASELKSLHP  214
                L+GMF++ ++D++  R+  ARD  GI   Y G      G + FASELK+L  
Sbjct  70   CVDRLNGMFAFAIWDRRRQRLFLARDRFGIKPLYYGRDDG--GRLLFASELKALLA  123


>CDD:433279 pfam13522, GATase_6, Glutamine amidotransferase domain.  This 
domain is a class-II glutamine amidotransferase domain found 
in a variety of enzymes, such as asparagine synthetase and 
glutamine--fructose-6-phosphate transaminase.
Length=130

 Score = 109 bits (275),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 4/110 (4%)

Query  100  TADSGAQPLVNDDGTIALAVNGEIYNHRILRKGLK-KQYNFKTHSDCEVVIPLYMEHGLD  158
              D+G QP+++ DG + L  NGEIYN+  LR+ L    + F++ SD EV++ LY E G D
Sbjct  24   LPDAGNQPMLSRDGRLVLVHNGEIYNYGELREELADLGHAFRSRSDTEVLLALYEEWGED  83

Query  159  APKHLDGMFSWVLYDKKEDRVVAARDPIGIISFYIGWSSETPGAVYFASE  208
              + L GMF++ ++D++   +  ARD +GI   Y G      G   FASE
Sbjct  84   CLERLRGMFAFAIWDRRRRTLFLARDRLGIKPLYYGILG---GGFVFASE  130



Lambda      K        H        a         alpha
   0.319    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787563556


Query= TCONS_00030139

Length=467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395594 pfam00733, Asn_synthase, Asparagine synthase. This fam...  301     5e-101
CDD:433289 pfam13537, GATase_7, Glutamine amidotransferase domain...  86.0    9e-21 


>CDD:395594 pfam00733, Asn_synthase, Asparagine synthase.  This family is 
always found associated with pfam00310. Members of this family 
catalyze the conversion of aspartate to asparagine.
Length=279

 Score = 301 bits (774),  Expect = 5e-101, Method: Composition-based stats.
 Identities = 120/338 (36%), Positives = 165/338 (49%), Gaps = 65/338 (19%)

Query  107  IRATLEKSVRKRLMAEVPYGVLLSGGLDSSLVASIAQRETLRMQETAKNALVDQTGASDL  166
            +R  LE +V +RL A+VP G  LSGGLDSS +A++A R++                    
Sbjct  2    LRELLEDAVARRLRADVPVGAFLSGGLDSSSIAALAARQSPS------------------  43

Query  167  VGIDDTNELSTVTTFQQLHSFSIGLPGA--PDTEAALEVARFLGTKHHAFTFTIEEGLDA  224
                             LH+FSIG  G    +   A EVA  LGT HH    T E+ LDA
Sbjct  44   ----------------PLHTFSIGFEGRGYDEAPYAREVAEHLGTDHHELVVTPEDLLDA  87

Query  225  LSDVIYHLETYDVTTIRASTPMYLLSRKIKAMGVKMVLSGEGSDEIFGGYLYFHAAPNKE  284
            L DVI+HL+        ++ P+YLLSR  +  GVK+VLSGEG+DE+FGGY ++      +
Sbjct  88   LPDVIWHLDE--PFADPSAIPLYLLSRLARRKGVKVVLSGEGADELFGGYPFYKGE---D  142

Query  285  EFHKETVRRVKNLHLADCLRANKSTSAWGLEARVPFLDKEFLEAAMGVDPQEKMITKERI  344
               +     +K L   D LRA++ + A GLE RVPFLD   +E A+ + P+ K+  +  I
Sbjct  143  PLRRMLYLDLKTLLPGDLLRADRMSMAHGLEVRVPFLDHRLVEYALRLPPELKL--RGGI  200

Query  345  EKYILRKAFDTSDEPDTKPYLPEKILWRQKEQFSDGVGYSWIDG-LKDQAEKQITDEMMK  403
            EKYILR+A         +  LP++IL R KE FS  VG   + G L++ AE  ++D    
Sbjct  201  EKYILREAL--------EGILPDEILERPKEGFSAPVGDWKLRGPLRELAEDLLSDS---  249

Query  404  NPKPEWGNDIPDTKEAYWYRMMFDEHFPPTCASTVERW  441
                         KE    R    E      A  +E W
Sbjct  250  ----------RLAKEGLLDREAVRELLDEHLAGMLELW  277


>CDD:433289 pfam13537, GATase_7, Glutamine amidotransferase domain.  This 
domain is a class-II glutamine amidotransferase domain found 
in a variety of enzymes such as asparagine synthetase and 
glutamine-fructose-6-phosphate transaminase.
Length=123

 Score = 86.0 bits (214),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (56%), Gaps = 2/61 (3%)

Query  2    EHGLDAPKHLDGMFSWVLYDKKEDRVVAARDPIGIISFYIGWSSETPGAVYFASELKSLH  61
            E G D    L+GMF++ ++D++  R+  ARD  GI   Y G      G + FASELK+L 
Sbjct  65   EWGEDCVDRLNGMFAFAIWDRRRQRLFLARDRFGIKPLYYGRDDG--GRLLFASELKALL  122

Query  62   P  62
             
Sbjct  123  A  123



Lambda      K        H        a         alpha
   0.317    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 578206408


Query= TCONS_00034812

Length=571
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395594 pfam00733, Asn_synthase, Asparagine synthase. This fam...  303     3e-100
CDD:433289 pfam13537, GATase_7, Glutamine amidotransferase domain...  175     5e-53 
CDD:433279 pfam13522, GATase_6, Glutamine amidotransferase domain...  131     8e-37 


>CDD:395594 pfam00733, Asn_synthase, Asparagine synthase.  This family is 
always found associated with pfam00310. Members of this family 
catalyze the conversion of aspartate to asparagine.
Length=279

 Score = 303 bits (778),  Expect = 3e-100, Method: Composition-based stats.
 Identities = 120/338 (36%), Positives = 165/338 (49%), Gaps = 65/338 (19%)

Query  191  IRATLEKSVRKRLMAEVPYGVLLSGGLDSSLVASIAQRETLRMQETAKNALVDQTGASDL  250
            +R  LE +V +RL A+VP G  LSGGLDSS +A++A R++                    
Sbjct  2    LRELLEDAVARRLRADVPVGAFLSGGLDSSSIAALAARQSPS------------------  43

Query  251  VGIDDTNELSTVTTFQQLHSFSIGLPGA--PDTEAALEVARFLGTKHHAFTFTIEEGLDA  308
                             LH+FSIG  G    +   A EVA  LGT HH    T E+ LDA
Sbjct  44   ----------------PLHTFSIGFEGRGYDEAPYAREVAEHLGTDHHELVVTPEDLLDA  87

Query  309  LSDVIYHLETYDVTTIRASTPMYLLSRKIKAMGVKMVLSGEGSDEIFGGYLYFHAAPNKE  368
            L DVI+HL+        ++ P+YLLSR  +  GVK+VLSGEG+DE+FGGY ++      +
Sbjct  88   LPDVIWHLDE--PFADPSAIPLYLLSRLARRKGVKVVLSGEGADELFGGYPFYKGE---D  142

Query  369  EFHKETVRRVKNLHLADCLRANKSTSAWGLEARVPFLDKEFLEAAMGVDPQEKMITKERI  428
               +     +K L   D LRA++ + A GLE RVPFLD   +E A+ + P+ K+  +  I
Sbjct  143  PLRRMLYLDLKTLLPGDLLRADRMSMAHGLEVRVPFLDHRLVEYALRLPPELKL--RGGI  200

Query  429  EKYILRKAFDTSDEPDTKPYLPEKILWRQKEQFSDGVGYSWIDG-LKDQAEKQITDEMMK  487
            EKYILR+A         +  LP++IL R KE FS  VG   + G L++ AE  ++D    
Sbjct  201  EKYILREAL--------EGILPDEILERPKEGFSAPVGDWKLRGPLRELAEDLLSDS---  249

Query  488  NPKPEWGNDIPDTKEAYWYRMMFDEHFPPTCASTVERW  525
                         KE    R    E      A  +E W
Sbjct  250  ----------RLAKEGLLDREAVRELLDEHLAGMLELW  277


>CDD:433289 pfam13537, GATase_7, Glutamine amidotransferase domain.  This 
domain is a class-II glutamine amidotransferase domain found 
in a variety of enzymes such as asparagine synthetase and 
glutamine-fructose-6-phosphate transaminase.
Length=123

 Score = 175 bits (445),  Expect = 5e-53, Method: Composition-based stats.
 Identities = 55/125 (44%), Positives = 77/125 (62%), Gaps = 5/125 (4%)

Query  25   HERLCIVGVDSGAQPLVND-DGTIALAVNGEIYNHRILRKGLKKQ-YNFKTHSDCEVVIP  82
            H RL I+ ++ GAQP+V+  DG   +  NGEIYN+R LR  L+ + Y F+THSD EV++ 
Sbjct  1    HRRLSIIDLEGGAQPMVSSEDGRYVIVFNGEIYNYRELRAELEAKGYRFRTHSDTEVILH  60

Query  83   LYM-EHGLDAPKHLDGMFSWVLYDKKEDRVVAARDPIGIISFYIGWSSETPGAVYFASEL  141
            LY  E G D    L+GMF++ ++D++  R+  ARD  GI   Y G      G + FASEL
Sbjct  61   LYEAEWGEDCVDRLNGMFAFAIWDRRRQRLFLARDRFGIKPLYYGRDDG--GRLLFASEL  118

Query  142  KSLHP  146
            K+L  
Sbjct  119  KALLA  123


>CDD:433279 pfam13522, GATase_6, Glutamine amidotransferase domain.  This 
domain is a class-II glutamine amidotransferase domain found 
in a variety of enzymes, such as asparagine synthetase and 
glutamine--fructose-6-phosphate transaminase.
Length=130

 Score = 131 bits (331),  Expect = 8e-37, Method: Composition-based stats.
 Identities = 55/133 (41%), Positives = 78/133 (59%), Gaps = 5/133 (4%)

Query  10   PDWSGNWSSEGTILAHERLCIVGV-DSGAQPLVNDDGTIALAVNGEIYNHRILRKGLK-K  67
            PD+SG W   G  L H RL IV + D+G QP+++ DG + L  NGEIYN+  LR+ L   
Sbjct  1    PDFSGIWVEGGVALGHVRLAIVDLPDAGNQPMLSRDGRLVLVHNGEIYNYGELREELADL  60

Query  68   QYNFKTHSDCEVVIPLYMEHGLDAPKHLDGMFSWVLYDKKEDRVVAARDPIGIISFYIGW  127
             + F++ SD EV++ LY E G D  + L GMF++ ++D++   +  ARD +GI   Y G 
Sbjct  61   GHAFRSRSDTEVLLALYEEWGEDCLERLRGMFAFAIWDRRRRTLFLARDRLGIKPLYYGI  120

Query  128  SSETPGAVYFASE  140
                 G   FASE
Sbjct  121  LG---GGFVFASE  130



Lambda      K        H        a         alpha
   0.318    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 715831012


Query= TCONS_00034814

Length=248
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460220 pfam01459, Porin_3, Eukaryotic porin                       240     2e-80


>CDD:460220 pfam01459, Porin_3, Eukaryotic porin.  
Length=269

 Score = 240 bits (615),  Expect = 2e-80, Method: Composition-based stats.
 Identities = 93/235 (40%), Positives = 128/235 (54%), Gaps = 7/235 (3%)

Query  3    APAAFSDIAKAANDLLNKDFYHTSAASLEVKSKAPNGVTFNVKG-KSAHEGPIAGSLEAK  61
             P  + DI K A DLLNKD YH   A L+V +K+  GV F V G  S   G  +G  EAK
Sbjct  1    NPGTYEDIGKEAKDLLNKD-YHFDGAKLDVTTKSGLGVAFQVSGSFSLGSGLSSGDFEAK  59

Query  62   YVDLPTGLTLTQAWTTANALDTKLELDNNIAKGLKAEILTQYLPSKQSKGAKLNLYFKQP  121
            Y D   GLTLT    T N L T   ++  +  GLK ++ TQ++P K  K  KL L +K  
Sbjct  60   YKD--KGLTLTLKGDTDNDLSTTATVNEQLTPGLKTKLSTQFVPGK--KSGKLELDYKGD  115

Query  122  NLHARAFFDLLNGPSANFDAVLGHEGFLVGAEGGYDVQKAAITKYSAAVGYSVPQYTAAI  181
            +  A     LL GP      + G  G  +GAE  YD     +TKY+AA+GY+   Y A++
Sbjct  116  DFTASLKVGLLAGPVVVGSYLQGVTGLALGAEASYDTASGKLTKYNAALGYTARDYIASL  175

Query  182  TAGNNLTVFSASYYHRVNQQVEAGAKATWDSKAGNSVGLEVASKYRLDPSSFAKA  236
            T  NN  V +ASYYH+V++++E GA+ T +  +  +  + +  KY LD S+  KA
Sbjct  176  TLVNNGGVLTASYYHKVSEKLEVGAELTLNFSSNENT-VTIGYKYDLDKSTTVKA  229



Lambda      K        H        a         alpha
   0.314    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00034813

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460220 pfam01459, Porin_3, Eukaryotic porin                       270     1e-90


>CDD:460220 pfam01459, Porin_3, Eukaryotic porin.  
Length=269

 Score = 270 bits (692),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 114/333 (34%), Positives = 151/333 (45%), Gaps = 65/333 (20%)

Query  3    APAAFSDIAKAANDLLNKDFYHTSAASLEVKSKAPNGVTFNVKG-KSAHEGPIAGSLEAK  61
             P  + DI K A DLLNKD YH   A L+V +K+  GV F V G  S   G  +G  EAK
Sbjct  1    NPGTYEDIGKEAKDLLNKD-YHFDGAKLDVTTKSGLGVAFQVSGSFSLGSGLSSGDFEAK  59

Query  62   YVDLPTGKRPITRKPPDPSTRKTGEARSMFSFTCGQVSSAYFRFLFMTRIVAHSVMLILC  121
            Y D                                                         
Sbjct  60   YKDK--------------------------------------------------------  63

Query  122  PHPGLTLTQAWTTANALDTKLELDNNIAKGLKAEILTQYLPSKQSKGAKLNLYFKQPNLH  181
               GLTLT    T N L T   ++  +  GLK ++ TQ++P K  K  KL L +K  +  
Sbjct  64   ---GLTLTLKGDTDNDLSTTATVNEQLTPGLKTKLSTQFVPGK--KSGKLELDYKGDDFT  118

Query  182  ARAFFDLLNGPSANFDAVLGHEGFLVGAEGGYDVQKAAITKYSAAVGYSVPQYTAAITAG  241
            A     LL GP      + G  G  +GAE  YD     +TKY+AA+GY+   Y A++T  
Sbjct  119  ASLKVGLLAGPVVVGSYLQGVTGLALGAEASYDTASGKLTKYNAALGYTARDYIASLTLV  178

Query  242  NNLTVFSASYYHRVNQQVEAGAKATWDSKAGNSVGLEVASKYRLDPSSFAKAKINDRGIA  301
            NN  V +ASYYH+V++++E GA+ T +  +  +  + +  KY LD S+  KAK+N  G  
Sbjct  179  NNGGVLTASYYHKVSEKLEVGAELTLNFSSNENT-VTIGYKYDLDKSTTVKAKVNSNGKV  237

Query  302  ALAYNVLLRPGVTLGLGASFDTQNLNQAAHKVG  334
             L Y   LRPGVTL L A  D + LN  AHK G
Sbjct  238  GLLYEQKLRPGVTLTLSAEVDHKKLN-GAHKFG  269



Lambda      K        H        a         alpha
   0.316    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00030141

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460220 pfam01459, Porin_3, Eukaryotic porin                       284     4e-97


>CDD:460220 pfam01459, Porin_3, Eukaryotic porin.  
Length=269

 Score = 284 bits (729),  Expect = 4e-97, Method: Composition-based stats.
 Identities = 114/276 (41%), Positives = 151/276 (55%), Gaps = 8/276 (3%)

Query  3    APAAFSDIAKAANDLLNKDFYHTSAASLEVKSKAPNGVTFNVKG-KSAHEGPIAGSLEAK  61
             P  + DI K A DLLNKD YH   A L+V +K+  GV F V G  S   G  +G  EAK
Sbjct  1    NPGTYEDIGKEAKDLLNKD-YHFDGAKLDVTTKSGLGVAFQVSGSFSLGSGLSSGDFEAK  59

Query  62   YVDLPTGLTLTQAWTTANALDTKLELDNNIAKGLKAEILTQYLPSKQSKGAKLNLYFKQP  121
            Y D   GLTLT    T N L T   ++  +  GLK ++ TQ++P K  K  KL L +K  
Sbjct  60   YKD--KGLTLTLKGDTDNDLSTTATVNEQLTPGLKTKLSTQFVPGK--KSGKLELDYKGD  115

Query  122  NLHARAFFDLLNGPSANFDAVLGHEGFLVGAEGGYDVQKAAITKYSAAVGYSVPQYTAAI  181
            +  A     LL GP      + G  G  +GAE  YD     +TKY+AA+GY+   Y A++
Sbjct  116  DFTASLKVGLLAGPVVVGSYLQGVTGLALGAEASYDTASGKLTKYNAALGYTARDYIASL  175

Query  182  TAGNNLTVFSASYYHRVNQQVEAGAKATWDSKAGNSVGLEVASKYRLDPSSFAKAKINDR  241
            T  NN  V +ASYYH+V++++E GA+ T +  +  +  + +  KY LD S+  KAK+N  
Sbjct  176  TLVNNGGVLTASYYHKVSEKLEVGAELTLNFSSNENT-VTIGYKYDLDKSTTVKAKVNSN  234

Query  242  GIAALAYNVLLRPGVTLGLGASFDTQNLNQAAHKVG  277
            G   L Y   LRPGVTL L A  D + LN  AHK G
Sbjct  235  GKVGLLYEQKLRPGVTLTLSAEVDHKKLN-GAHKFG  269



Lambda      K        H        a         alpha
   0.313    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00030142

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460220 pfam01459, Porin_3, Eukaryotic porin                       262     1e-87


>CDD:460220 pfam01459, Porin_3, Eukaryotic porin.  
Length=269

 Score = 262 bits (673),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 113/337 (34%), Positives = 150/337 (45%), Gaps = 69/337 (20%)

Query  3    APAAFSDIAKAANDLLNKDFYHTSAGILEVKSKAPNGVTFNVKG-KSAHEGPIAGSLEAK  61
             P  + DI K A DLLNKD YH     L+V +K+  GV F V G  S   G  +G  EAK
Sbjct  1    NPGTYEDIGKEAKDLLNKD-YHFDGAKLDVTTKSGLGVAFQVSGSFSLGSGLSSGDFEAK  59

Query  62   YVDLPTGKRPITRKPPDPSTRKTGEARSMFSFTCGQVSSAYFRFLFMTRIVAHSVMLILC  121
            Y D                                                         
Sbjct  60   YKDK--------------------------------------------------------  63

Query  122  PHPGLTLTQAWTTANALDTKLELDNNIAKGLKAEILTQYLPSKQSKGAKLNLYFKQPNLH  181
               GLTLT    T N L T   ++  +  GLK ++ TQ++P K  K  KL L +K  +  
Sbjct  64   ---GLTLTLKGDTDNDLSTTATVNEQLTPGLKTKLSTQFVPGK--KSGKLELDYKGDDFT  118

Query  182  ARAFFDLLNGPSANFDAVLGHEGFLVGAEGGYDVQKAAITKYSAAVGYSVPQYTAAITAG  241
            A     LL GP      + G  G  +GAE  YD     +TKY+AA+GY+   Y A++T  
Sbjct  119  ASLKVGLLAGPVVVGSYLQGVTGLALGAEASYDTASGKLTKYNAALGYTARDYIASLTLV  178

Query  242  NNLTVFSASYYHRVNQQVEAGAKATWDSKAGNSVGLEVASKYRLDPSSFAKACRSAKIND  301
            NN  V +ASYYH+V++++E GA+ T +  +  +  + +  KY LD S+  K    AK+N 
Sbjct  179  NNGGVLTASYYHKVSEKLEVGAELTLNFSSNENT-VTIGYKYDLDKSTTVK----AKVNS  233

Query  302  RGIAALAYNVLLRPGVTLGLGASFDTQNLNQAAHKVG  338
             G   L Y   LRPGVTL L A  D + LN  AHK G
Sbjct  234  NGKVGLLYEQKLRPGVTLTLSAEVDHKKLN-GAHKFG  269



Lambda      K        H        a         alpha
   0.316    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00030143

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  116     8e-31


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 116 bits (292),  Expect = 8e-31, Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 83/225 (37%), Gaps = 33/225 (15%)

Query  129  YRQAAEVHRQVRQYAQKTIKPGQTLTEIAEGIEDAVRALTGHQGLEEGDNLKGGMGFP--  186
             R+AA +     + A   I+PG T  E+A  +E A     G            G  FP  
Sbjct  3    MRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGG----------ARGPAFPPI  52

Query  187  CGLSINHCAAHYTPNAGNKMVLQQGDVMKVDFGAHINGR-IVDSAFTM---TFDPVYDPL  242
                 N    HY P   N  VL+ GD++ +D GA  +G    D   T       P    L
Sbjct  53   VASGPNAAIPHYIP---NDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVVGKPSPEQREL  109

Query  243  LEAVKDATNTGIREAGIDVRMSDIGAAIQEAMESYEVELNGTMYPVKCIRNLNGHNIDRH  302
             EAV +A    I      V   D+ AA +E +E                  L GH I   
Sbjct  110  YEAVLEAQEAAIAAVKPGVTGGDVDAAAREVLEEAG-------LGEYFPHGL-GHGIGLE  161

Query  303  IIHGGKSVPIVKGSDQTKMEEGETFAIET--FGSTGKGYVR-EDM  344
             +H G  +   +G D   +E G  F IE   +   G G VR ED 
Sbjct  162  -VHEGPYIS--RGGDDRVLEPGMVFTIEPGIYFIPGWGGVRIEDT  203



Lambda      K        H        a         alpha
   0.313    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00034816

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  115     1e-30


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 115 bits (291),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 83/225 (37%), Gaps = 33/225 (15%)

Query  157  YRQAAEVHRQVRQYAQKTIKPGQTLTEIAEGIEDAVRALTGHQGLEEGDNLKGGMGFP--  214
             R+AA +     + A   I+PG T  E+A  +E A     G            G  FP  
Sbjct  3    MRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGG----------ARGPAFPPI  52

Query  215  CGLSINHCAAHYTPNAGNKMVLQQGDVMKVDFGAHINGR-IVDSAFTM---TFDPVYDPL  270
                 N    HY P   N  VL+ GD++ +D GA  +G    D   T       P    L
Sbjct  53   VASGPNAAIPHYIP---NDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVVGKPSPEQREL  109

Query  271  LEAVKDATNTGIREAGIDVRMSDIGAAIQEAMESYEVELNGTMYPVKCIRNLNGHNIDRH  330
             EAV +A    I      V   D+ AA +E +E                  L GH I   
Sbjct  110  YEAVLEAQEAAIAAVKPGVTGGDVDAAAREVLEEAG-------LGEYFPHGL-GHGIGLE  161

Query  331  IIHGGKSVPIVKGSDQTKMEEGETFAIET--FGSTGKGYVR-EDM  372
             +H G  +   +G D   +E G  F IE   +   G G VR ED 
Sbjct  162  -VHEGPYIS--RGGDDRVLEPGMVFTIEPGIYFIPGWGGVRIEDT  203



Lambda      K        H        a         alpha
   0.314    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00034817

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  114     3e-30


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 114 bits (288),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 83/224 (37%), Gaps = 33/224 (15%)

Query  129  YRQAAEVHRQVRQYAQKTIKPGQTLTEIAEGIEDAVRALTGHQGLEEGDNLKGGMGFP--  186
             R+AA +     + A   I+PG T  E+A  +E A     G            G  FP  
Sbjct  3    MRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGG----------ARGPAFPPI  52

Query  187  CGLSINHCAAHYTPNAGNKMVLQQGDVMKVDFGAHINGR-IVDSAFTM---TFDPVYDPL  242
                 N    HY P   N  VL+ GD++ +D GA  +G    D   T       P    L
Sbjct  53   VASGPNAAIPHYIP---NDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVVGKPSPEQREL  109

Query  243  LEAVKDATNTGIREAGIDVRMSDIGAAIQEAMESYEVELNGTMYPVKCIRNLNGHNIDRH  302
             EAV +A    I      V   D+ AA +E +E                  L GH I   
Sbjct  110  YEAVLEAQEAAIAAVKPGVTGGDVDAAAREVLEEAG-------LGEYFPHGL-GHGIGLE  161

Query  303  IIHGGKSVPIVKGSDQTKMEEGETFAIET--FGSTGKGYVR-ED  343
             +H G  +   +G D   +E G  F IE   +   G G VR ED
Sbjct  162  -VHEGPYIS--RGGDDRVLEPGMVFTIEPGIYFIPGWGGVRIED  202



Lambda      K        H        a         alpha
   0.314    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00030144

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24....  114     5e-30


>CDD:459852 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This 
family contains metallopeptidases. It also contains non-peptidase 
homologs such as the N terminal domain of Spt16 which 
is a histone H3-H4 binding module.
Length=208

 Score = 114 bits (288),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 83/224 (37%), Gaps = 33/224 (15%)

Query  157  YRQAAEVHRQVRQYAQKTIKPGQTLTEIAEGIEDAVRALTGHQGLEEGDNLKGGMGFP--  214
             R+AA +     + A   I+PG T  E+A  +E A     G            G  FP  
Sbjct  3    MRKAARIAAAALEAALAAIRPGVTERELAAELEAARLRRGG----------ARGPAFPPI  52

Query  215  CGLSINHCAAHYTPNAGNKMVLQQGDVMKVDFGAHINGR-IVDSAFTM---TFDPVYDPL  270
                 N    HY P   N  VL+ GD++ +D GA  +G    D   T       P    L
Sbjct  53   VASGPNAAIPHYIP---NDRVLKPGDLVLIDVGAEYDGGYCSDITRTFVVGKPSPEQREL  109

Query  271  LEAVKDATNTGIREAGIDVRMSDIGAAIQEAMESYEVELNGTMYPVKCIRNLNGHNIDRH  330
             EAV +A    I      V   D+ AA +E +E                  L GH I   
Sbjct  110  YEAVLEAQEAAIAAVKPGVTGGDVDAAAREVLEEAG-------LGEYFPHGL-GHGIGLE  161

Query  331  IIHGGKSVPIVKGSDQTKMEEGETFAIET--FGSTGKGYVR-ED  371
             +H G  +   +G D   +E G  F IE   +   G G VR ED
Sbjct  162  -VHEGPYIS--RGGDDRVLEPGMVFTIEPGIYFIPGWGGVRIED  202



Lambda      K        H        a         alpha
   0.315    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00030147

Length=491
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425713 pfam00487, FA_desaturase, Fatty acid desaturase            83.5    1e-18
CDD:462517 pfam08557, Lipid_DES, Sphingolipid Delta4-desaturase (...  74.1    2e-17


>CDD:425713 pfam00487, FA_desaturase, Fatty acid desaturase.  
Length=252

 Score = 83.5 bits (206),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 85/273 (31%), Gaps = 29/273 (11%)

Query  169  SWSFWATAYIIGATANQNLFLAIHEISHNLAFRSAMANR----LLAIFANLPIGLPYSAA  224
            SW     A ++G           HE SH   F+    NR    LL   A LP+G+ YSA 
Sbjct  1    SWLALLLALLLGLFLLGITGSLAHEASHGALFKKRRLNRWLNDLLGRLAGLPLGISYSA-  59

Query  225  FRPYHLTHHKSLGVAGLDTDLPTAVEAF--FLDSLLGKAFFCTFQIFFYAVRPMFIYSPP  282
            +R  HL HH+       D D       F   L  LL          +  A+         
Sbjct  60   WRIAHLVHHRYTNGPDKDPDTAPLASRFRGLLRYLLRWLLGLLVLAWLLALVLPLWLRRL  119

Query  283  FTYIHLLNLITQLSFDYALTKFCGGSLQPLLYLLLSSFLAGS--LHPCAGHFIAEHYFFS  340
                  +    +     A        L   L  L    L     L P           F+
Sbjct  120  ARRKRPIKSRRRRWRLIAWLLLLAAWLGLWLGFLGLGGLLLLLWLLPLLVFGFLLALIFN  179

Query  341  RVESGGTESIEEQRKMRANSGASKQKQQPHPLDSLPPPETYSYYGPLNILTYNVGLHNEH  400
             +E  G +  E   +   +                      S    LN+LT N+  H EH
Sbjct  180  YLEHYGGDWGERPVETTRSI--------------------RSPNWWLNLLTGNLNYHIEH  219

Query  401  HDFPAIPWTRLHELHRIAKEFYEPLPCHRSWVW  433
            H FP +PW RL +LHR  +E           + 
Sbjct  220  HLFPGVPWYRLPKLHRRLREALPEHGLPYRSLG  252


>CDD:462517 pfam08557, Lipid_DES, Sphingolipid Delta4-desaturase (DES).  
Sphingolipids are important membrane signalling molecules involved 
in many different cellular functions in eukaryotes. Sphingolipid 
delta 4-desaturase catalyzes the formation of (E)-sphing-4-enine. 
Some proteins in this family have bifunctional 
delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated 
sphingolipids may play a role in early signalling 
required for entry into meiotic and spermatid differentiation 
pathways during Drosophila spermatogenesis. This small domain 
associates with FA_desaturase pfam00487 and appears to be 
specific to sphingolipid delta 4-desaturase.
Length=37

 Score = 74.1 bits (183),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 22/37 (59%), Positives = 29/37 (78%), Gaps = 0/37 (0%)

Query  107  VEDKFFWTYTEEPHRSRRQAIIKAHPEVTRLCGPEPL  143
              + F+WTYTEEPH SRR+ I+K HPE+ +L GP+PL
Sbjct  1    SRNDFYWTYTEEPHASRRKEILKKHPEIKKLMGPDPL  37



Lambda      K        H        a         alpha
   0.324    0.138    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0748    0.140     1.90     42.6     43.6 

Effective search space used: 605626400


Query= TCONS_00030146

Length=491
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425713 pfam00487, FA_desaturase, Fatty acid desaturase            83.5    1e-18
CDD:462517 pfam08557, Lipid_DES, Sphingolipid Delta4-desaturase (...  74.1    2e-17


>CDD:425713 pfam00487, FA_desaturase, Fatty acid desaturase.  
Length=252

 Score = 83.5 bits (206),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 85/273 (31%), Gaps = 29/273 (11%)

Query  169  SWSFWATAYIIGATANQNLFLAIHEISHNLAFRSAMANR----LLAIFANLPIGLPYSAA  224
            SW     A ++G           HE SH   F+    NR    LL   A LP+G+ YSA 
Sbjct  1    SWLALLLALLLGLFLLGITGSLAHEASHGALFKKRRLNRWLNDLLGRLAGLPLGISYSA-  59

Query  225  FRPYHLTHHKSLGVAGLDTDLPTAVEAF--FLDSLLGKAFFCTFQIFFYAVRPMFIYSPP  282
            +R  HL HH+       D D       F   L  LL          +  A+         
Sbjct  60   WRIAHLVHHRYTNGPDKDPDTAPLASRFRGLLRYLLRWLLGLLVLAWLLALVLPLWLRRL  119

Query  283  FTYIHLLNLITQLSFDYALTKFCGGSLQPLLYLLLSSFLAGS--LHPCAGHFIAEHYFFS  340
                  +    +     A        L   L  L    L     L P           F+
Sbjct  120  ARRKRPIKSRRRRWRLIAWLLLLAAWLGLWLGFLGLGGLLLLLWLLPLLVFGFLLALIFN  179

Query  341  RVESGGTESIEEQRKMRANSGASKQKQQPHPLDSLPPPETYSYYGPLNILTYNVGLHNEH  400
             +E  G +  E   +   +                      S    LN+LT N+  H EH
Sbjct  180  YLEHYGGDWGERPVETTRSI--------------------RSPNWWLNLLTGNLNYHIEH  219

Query  401  HDFPAIPWTRLHELHRIAKEFYEPLPCHRSWVW  433
            H FP +PW RL +LHR  +E           + 
Sbjct  220  HLFPGVPWYRLPKLHRRLREALPEHGLPYRSLG  252


>CDD:462517 pfam08557, Lipid_DES, Sphingolipid Delta4-desaturase (DES).  
Sphingolipids are important membrane signalling molecules involved 
in many different cellular functions in eukaryotes. Sphingolipid 
delta 4-desaturase catalyzes the formation of (E)-sphing-4-enine. 
Some proteins in this family have bifunctional 
delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated 
sphingolipids may play a role in early signalling 
required for entry into meiotic and spermatid differentiation 
pathways during Drosophila spermatogenesis. This small domain 
associates with FA_desaturase pfam00487 and appears to be 
specific to sphingolipid delta 4-desaturase.
Length=37

 Score = 74.1 bits (183),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 22/37 (59%), Positives = 29/37 (78%), Gaps = 0/37 (0%)

Query  107  VEDKFFWTYTEEPHRSRRQAIIKAHPEVTRLCGPEPL  143
              + F+WTYTEEPH SRR+ I+K HPE+ +L GP+PL
Sbjct  1    SRNDFYWTYTEEPHASRRKEILKKHPEIKKLMGPDPL  37



Lambda      K        H        a         alpha
   0.324    0.138    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 605626400


Query= TCONS_00034818

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00030148

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00030150

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00030149

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00034819

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00034820

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00030151

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.125    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00030152

Length=311


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00034821

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00030157

Length=580
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367812 pfam04098, Rad52_Rad22, Rad52/22 family double-strand ...  223     4e-71


>CDD:367812 pfam04098, Rad52_Rad22, Rad52/22 family double-strand break repair 
protein.  The DNA single-strand annealing proteins (SSAPs), 
such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent 
and RecA-independent DNA recombination pathways. 
This family includes proteins related to Rad52. These proteins 
contain two helix-hairpin-helix motifs.
Length=140

 Score = 223 bits (570),  Expect = 4e-71, Method: Composition-based stats.
 Identities = 97/139 (70%), Positives = 110/139 (79%), Gaps = 0/139 (0%)

Query  43   EIATLQARLDKKLGPEYISSRPGAAGQKVHYLSADKCINLANEVFGFNGWSSSIQNIQID  102
            EI TLQA+L+K LGPEYIS RPG  GQKV Y+   K INLANEVFGFNGWSS I +I++D
Sbjct  1    EIGTLQAKLEKPLGPEYISWRPGPGGQKVAYIEGWKVINLANEVFGFNGWSSEIISIEVD  60

Query  103  FVEESQNTGKISLGLSVIVRVTLKDGTYHEDIGYGHIENCKGKAAAFEKAKKEGTTDALK  162
            F++E    GK S+G + +VRVTLKDGTY EDIGYG IEN   K  AFEKAKKE  TDALK
Sbjct  61   FIDERPEGGKYSVGYTAVVRVTLKDGTYREDIGYGSIENAPSKGEAFEKAKKEAVTDALK  120

Query  163  RALRNFGNVLGNCIYDKDY  181
            RALR FGNVLGNC+YDK+Y
Sbjct  121  RALRQFGNVLGNCLYDKEY  139



Lambda      K        H        a         alpha
   0.311    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 729280864


Query= TCONS_00030153

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00030154

Length=311


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00030155

Length=306


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00030156

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00034822

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367812 pfam04098, Rad52_Rad22, Rad52/22 family double-strand ...  223     5e-76


>CDD:367812 pfam04098, Rad52_Rad22, Rad52/22 family double-strand break repair 
protein.  The DNA single-strand annealing proteins (SSAPs), 
such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent 
and RecA-independent DNA recombination pathways. 
This family includes proteins related to Rad52. These proteins 
contain two helix-hairpin-helix motifs.
Length=140

 Score = 223 bits (570),  Expect = 5e-76, Method: Composition-based stats.
 Identities = 97/139 (70%), Positives = 110/139 (79%), Gaps = 0/139 (0%)

Query  43   EIATLQARLDKKLGPEYISSRPGAAGQKVHYLSADKCINLANEVFGFNGWSSSIQNIQID  102
            EI TLQA+L+K LGPEYIS RPG  GQKV Y+   K INLANEVFGFNGWSS I +I++D
Sbjct  1    EIGTLQAKLEKPLGPEYISWRPGPGGQKVAYIEGWKVINLANEVFGFNGWSSEIISIEVD  60

Query  103  FVEESQNTGKISLGLSVIVRVTLKDGTYHEDIGYGHIENCKGKAAAFEKAKKEGTTDALK  162
            F++E    GK S+G + +VRVTLKDGTY EDIGYG IEN   K  AFEKAKKE  TDALK
Sbjct  61   FIDERPEGGKYSVGYTAVVRVTLKDGTYREDIGYGSIENAPSKGEAFEKAKKEAVTDALK  120

Query  163  RALRNFGNVLGNCIYDKDY  181
            RALR FGNVLGNC+YDK+Y
Sbjct  121  RALRQFGNVLGNCLYDKEY  139



Lambda      K        H        a         alpha
   0.315    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00034823

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367812 pfam04098, Rad52_Rad22, Rad52/22 family double-strand ...  153     2e-49


>CDD:367812 pfam04098, Rad52_Rad22, Rad52/22 family double-strand break repair 
protein.  The DNA single-strand annealing proteins (SSAPs), 
such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent 
and RecA-independent DNA recombination pathways. 
This family includes proteins related to Rad52. These proteins 
contain two helix-hairpin-helix motifs.
Length=140

 Score = 153 bits (389),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 59/90 (66%), Positives = 70/90 (78%), Gaps = 0/90 (0%)

Query  43   EIATLQARLDKKLGPEYISSRPGAAGQKVHYLSADKCINLANEVFGFNGWSSSIQNIQID  102
            EI TLQA+L+K LGPEYIS RPG  GQKV Y+   K INLANEVFGFNGWSS I +I++D
Sbjct  1    EIGTLQAKLEKPLGPEYISWRPGPGGQKVAYIEGWKVINLANEVFGFNGWSSEIISIEVD  60

Query  103  FVEESQNTGKISLGLSVIVRVTLKDGTYHE  132
            F++E    GK S+G + +VRVTLKDGTY E
Sbjct  61   FIDERPEGGKYSVGYTAVVRVTLKDGTYRE  90



Lambda      K        H        a         alpha
   0.316    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00034824

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367812 pfam04098, Rad52_Rad22, Rad52/22 family double-strand ...  153     2e-49


>CDD:367812 pfam04098, Rad52_Rad22, Rad52/22 family double-strand break repair 
protein.  The DNA single-strand annealing proteins (SSAPs), 
such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent 
and RecA-independent DNA recombination pathways. 
This family includes proteins related to Rad52. These proteins 
contain two helix-hairpin-helix motifs.
Length=140

 Score = 153 bits (389),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 59/90 (66%), Positives = 70/90 (78%), Gaps = 0/90 (0%)

Query  43   EIATLQARLDKKLGPEYISSRPGAAGQKVHYLSADKCINLANEVFGFNGWSSSIQNIQID  102
            EI TLQA+L+K LGPEYIS RPG  GQKV Y+   K INLANEVFGFNGWSS I +I++D
Sbjct  1    EIGTLQAKLEKPLGPEYISWRPGPGGQKVAYIEGWKVINLANEVFGFNGWSSEIISIEVD  60

Query  103  FVEESQNTGKISLGLSVIVRVTLKDGTYHE  132
            F++E    GK S+G + +VRVTLKDGTY E
Sbjct  61   FIDERPEGGKYSVGYTAVVRVTLKDGTYRE  90



Lambda      K        H        a         alpha
   0.316    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00034825

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367812 pfam04098, Rad52_Rad22, Rad52/22 family double-strand ...  223     5e-76


>CDD:367812 pfam04098, Rad52_Rad22, Rad52/22 family double-strand break repair 
protein.  The DNA single-strand annealing proteins (SSAPs), 
such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent 
and RecA-independent DNA recombination pathways. 
This family includes proteins related to Rad52. These proteins 
contain two helix-hairpin-helix motifs.
Length=140

 Score = 223 bits (570),  Expect = 5e-76, Method: Composition-based stats.
 Identities = 97/139 (70%), Positives = 110/139 (79%), Gaps = 0/139 (0%)

Query  43   EIATLQARLDKKLGPEYISSRPGAAGQKVHYLSADKCINLANEVFGFNGWSSSIQNIQID  102
            EI TLQA+L+K LGPEYIS RPG  GQKV Y+   K INLANEVFGFNGWSS I +I++D
Sbjct  1    EIGTLQAKLEKPLGPEYISWRPGPGGQKVAYIEGWKVINLANEVFGFNGWSSEIISIEVD  60

Query  103  FVEESQNTGKISLGLSVIVRVTLKDGTYHEDIGYGHIENCKGKAAAFEKAKKEGTTDALK  162
            F++E    GK S+G + +VRVTLKDGTY EDIGYG IEN   K  AFEKAKKE  TDALK
Sbjct  61   FIDERPEGGKYSVGYTAVVRVTLKDGTYREDIGYGSIENAPSKGEAFEKAKKEAVTDALK  120

Query  163  RALRNFGNVLGNCIYDKDY  181
            RALR FGNVLGNC+YDK+Y
Sbjct  121  RALRQFGNVLGNCLYDKEY  139



Lambda      K        H        a         alpha
   0.315    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00030158

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00034826

Length=172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             227     2e-75


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 227 bits (581),  Expect = 2e-75, Method: Composition-based stats.
 Identities = 69/161 (43%), Positives = 101/161 (63%), Gaps = 4/161 (2%)

Query  13   GGLGRVMAGFIDPGLTWDDLVWVRKHTHLPVCLKGVMSADDAILAMQAGLDGILLSNHGG  72
            GG    +    DP LTWDDL W+R+    P+ +KG++S +DA  A++AG+DGI++SNHGG
Sbjct  191  GGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAVEAGVDGIVVSNHGG  250

Query  73   RNLDTSPPSIVTLLELHKRCPEIFDKMEIYVDSGIRRGTDILKAICLGATAVGMGRSMLF  132
            R LD +P +I  L E+         ++ + VD GIRRGTD+LKA+ LGA AV +GR  L+
Sbjct  251  RQLDGAPATIDALPEIVAAVG---GRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFLY  307

Query  133  ATN-YGQEGVEHLIDIMKDELETAMRNTGITSLDEAGPHMV  172
                 G+ GV H ++I++DELE  M   G  S+ +  P ++
Sbjct  308  GLAAGGEAGVAHALEILRDELERTMALLGCKSIADLTPSLL  348



Lambda      K        H        a         alpha
   0.321    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00030159

Length=166
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             198     3e-64


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 198 bits (507),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 60/135 (44%), Positives = 86/135 (64%), Gaps = 4/135 (3%)

Query  13   GGLGRVMAGFIDPGLTWDDLVWVRKHTHLPVCLKGVMSADDAILAMQAGLDGILLSNHGG  72
            GG    +    DP LTWDDL W+R+    P+ +KG++S +DA  A++AG+DGI++SNHGG
Sbjct  191  GGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAVEAGVDGIVVSNHGG  250

Query  73   RNLDTSPPSIVTLLELHKRCPEIFDKMEIYVDSGIRRGTDILKAICLGATAVGMGRSMLF  132
            R LD +P +I  L E+         ++ + VD GIRRGTD+LKA+ LGA AV +GR  L+
Sbjct  251  RQLDGAPATIDALPEIVAAVG---GRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFLY  307

Query  133  ATN-YGQEGVEHLID  146
                 G+ GV H ++
Sbjct  308  GLAAGGEAGVAHALE  322



Lambda      K        H        a         alpha
   0.322    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00034827

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             227     1e-74


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 227 bits (580),  Expect = 1e-74, Method: Composition-based stats.
 Identities = 69/163 (42%), Positives = 101/163 (62%), Gaps = 4/163 (2%)

Query  13   GGLGRVMAGFIDPGLTWDDLVWVRKHTHLPVCLKGVMSADDAILAMQAGLDGILLSNHGG  72
            GG    +    DP LTWDDL W+R+    P+ +KG++S +DA  A++AG+DGI++SNHGG
Sbjct  191  GGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAVEAGVDGIVVSNHGG  250

Query  73   RNLDTSPPSIVTLLELHKRCPEIFDKMEIYVDSGIRRGTDILKAICLGATAVGMGRSMLF  132
            R LD +P +I  L E+         ++ + VD GIRRGTD+LKA+ LGA AV +GR  L+
Sbjct  251  RQLDGAPATIDALPEIVAAVG---GRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFLY  307

Query  133  ATN-YGQEGVEHLIDIMKDELETAMRNTGITSLDEAGPHMVHT  174
                 G+ GV H ++I++DELE  M   G  S+ +  P ++  
Sbjct  308  GLAAGGEAGVAHALEILRDELERTMALLGCKSIADLTPSLLRR  350



Lambda      K        H        a         alpha
   0.320    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00030161

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             419     9e-146
CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  90.4    6e-23 


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 419 bits (1080),  Expect = 9e-146, Method: Composition-based stats.
 Identities = 134/355 (38%), Positives = 196/355 (55%), Gaps = 17/355 (5%)

Query  122  ASKTASKKTWAFYSSASTDLITRDANKSCFDRIWFRPRVLRNVRSVDSRTKVLGVDCSMP  181
            A K   +  + +    + D +T   N++ FDRI  RPRVLR+V + D  T +LG   S+P
Sbjct  1    ARKRLPRFAFDYLDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSNRDLSTTLLGQRLSLP  60

Query  182  LFVSPAAMAKLIHPDGECAIARACERKGIIQGVSNNSSYTLDQLREAAPSANFFFQLYVN  241
              ++P  M  L HPDGE A+ARA    GI   +S  SS +L+++  AA     +FQLYV 
Sbjct  61   FGIAPVGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEVAAAA-GGPLWFQLYVP  119

Query  242  RDRTKSAALLRQCSANPNVRAIFVTVDAAWPGKREADER--------VKADENLSVPMAP  293
            RDR  +  LL +  A    +A+ +TVD    G+RE D R        +     L + + P
Sbjct  120  RDRELTEDLLERAEA-AGYKALVLTVDTPVLGRRERDLRNGFTLPPRLTPRNLLDLALHP  178

Query  294  ARAKNDKKGG---GLGRVMAGFIDPGLTWDDLVWVRKHTHLPVCLKGVMSADDAILAMQA  350
              A    + G   G    +    DP LTWDDL W+R+    P+ +KG++S +DA  A++A
Sbjct  179  RWALGVLRRGGAGGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAVEA  238

Query  351  GLDGILLSNHGGRNLDTSPPSIVTLLELHKRCPEIFDKMEIYVDSGIRRGTDILKAICLG  410
            G+DGI++SNHGGR LD +P +I  L E+         ++ + VD GIRRGTD+LKA+ LG
Sbjct  239  GVDGIVVSNHGGRQLDGAPATIDALPEIVAAVG---GRIPVLVDGGIRRGTDVLKALALG  295

Query  411  ATAVGMGRSMLFATN-YGQEGVEHLIDIMKDELETAMRNTGITSLDEAGPHMVHT  464
            A AV +GR  L+     G+ GV H ++I++DELE  M   G  S+ +  P ++  
Sbjct  296  ADAVLLGRPFLYGLAAGGEAGVAHALEILRDELERTMALLGCKSIADLTPSLLRR  350


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 90.4 bits (225),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 30/72 (42%), Positives = 42/72 (58%), Gaps = 0/72 (0%)

Query  10  KEVSKHKSPDDCWIVVNNKVWDVTDFVEEHPGGSTIILKYAGRDATKAYSEVHSPGVIKS  69
           +E+SKH    DCW+ +N KV+DVT F++EHPGG  +IL  AG+DAT A+  +        
Sbjct  3   EELSKHNGDGDCWVAINGKVYDVTKFLKEHPGGEDVILSAAGKDATDAFEAIGHSEDAAE  62

Query  70  NLPPEKYKGILD  81
            L  +   G L 
Sbjct  63  KLLKKYRIGELA  74



Lambda      K        H        a         alpha
   0.317    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00030160

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             389     1e-134
CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  91.5    2e-23 


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 389 bits (1003),  Expect = 1e-134, Method: Composition-based stats.
 Identities = 125/327 (38%), Positives = 181/327 (55%), Gaps = 17/327 (5%)

Query  122  ASKTASKKTWAFYSSASTDLITRDANKSCFDRIWFRPRVLRNVRSVDSRTKVLGVDCSMP  181
            A K   +  + +    + D +T   N++ FDRI  RPRVLR+V + D  T +LG   S+P
Sbjct  1    ARKRLPRFAFDYLDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSNRDLSTTLLGQRLSLP  60

Query  182  LFVSPAAMAKLIHPDGECAIARACERKGIIQGVSNNSSYTLDQLREAAPSANFFFQLYVN  241
              ++P  M  L HPDGE A+ARA    GI   +S  SS +L+++  AA     +FQLYV 
Sbjct  61   FGIAPVGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEVAAAA-GGPLWFQLYVP  119

Query  242  RDRTKSAALLRQCSANPNVRAIFVTVDAAWPGKREADER--------VKADENLSVPMAP  293
            RDR  +  LL +  A    +A+ +TVD    G+RE D R        +     L + + P
Sbjct  120  RDRELTEDLLERAEA-AGYKALVLTVDTPVLGRRERDLRNGFTLPPRLTPRNLLDLALHP  178

Query  294  ARAKNDKKGG---GLGRVMAGFIDPGLTWDDLVWVRKHTHLPVCLKGVMSADDAILAMQA  350
              A    + G   G    +    DP LTWDDL W+R+    P+ +KG++S +DA  A++A
Sbjct  179  RWALGVLRRGGAGGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAVEA  238

Query  351  GLDGILLSNHGGRNLDTSPPSIVTLLELHKRCPEIFDKMEIYVDSGIRRGTDILKAICLG  410
            G+DGI++SNHGGR LD +P +I  L E+         ++ + VD GIRRGTD+LKA+ LG
Sbjct  239  GVDGIVVSNHGGRQLDGAPATIDALPEIVAAVG---GRIPVLVDGGIRRGTDVLKALALG  295

Query  411  ATAVGMGRSMLFATN-YGQEGVEHLID  436
            A AV +GR  L+     G+ GV H ++
Sbjct  296  ADAVLLGRPFLYGLAAGGEAGVAHALE  322


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 91.5 bits (228),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 30/72 (42%), Positives = 42/72 (58%), Gaps = 0/72 (0%)

Query  10  KEVSKHKSPDDCWIVVNNKVWDVTDFVEEHPGGSTIILKYAGRDATKAYSEVHSPGVIKS  69
           +E+SKH    DCW+ +N KV+DVT F++EHPGG  +IL  AG+DAT A+  +        
Sbjct  3   EELSKHNGDGDCWVAINGKVYDVTKFLKEHPGGEDVILSAAGKDATDAFEAIGHSEDAAE  62

Query  70  NLPPEKYKGILD  81
            L  +   G L 
Sbjct  63  KLLKKYRIGELA  74



Lambda      K        H        a         alpha
   0.318    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00034828

Length=166
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             198     3e-64


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 198 bits (507),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 60/135 (44%), Positives = 86/135 (64%), Gaps = 4/135 (3%)

Query  13   GGLGRVMAGFIDPGLTWDDLVWVRKHTHLPVCLKGVMSADDAILAMQAGLDGILLSNHGG  72
            GG    +    DP LTWDDL W+R+    P+ +KG++S +DA  A++AG+DGI++SNHGG
Sbjct  191  GGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAVEAGVDGIVVSNHGG  250

Query  73   RNLDTSPPSIVTLLELHKRCPEIFDKMEIYVDSGIRRGTDILKAICLGATAVGMGRSMLF  132
            R LD +P +I  L E+         ++ + VD GIRRGTD+LKA+ LGA AV +GR  L+
Sbjct  251  RQLDGAPATIDALPEIVAAVG---GRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFLY  307

Query  133  ATN-YGQEGVEHLID  146
                 G+ GV H ++
Sbjct  308  GLAAGGEAGVAHALE  322



Lambda      K        H        a         alpha
   0.322    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00034829

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             393     3e-135
CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  91.9    2e-23 


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 393 bits (1011),  Expect = 3e-135, Method: Composition-based stats.
 Identities = 125/327 (38%), Positives = 181/327 (55%), Gaps = 17/327 (5%)

Query  160  ASKTASKKTWAFYSSASTDLITRDANKSCFDRIWFRPRVLRNVRSVDSRTKVLGVDCSMP  219
            A K   +  + +    + D +T   N++ FDRI  RPRVLR+V + D  T +LG   S+P
Sbjct  1    ARKRLPRFAFDYLDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSNRDLSTTLLGQRLSLP  60

Query  220  LFVSPAAMAKLIHPDGECAIARACERKGIIQGVSNNSSYTLDQLREAAPSANFFFQLYVN  279
              ++P  M  L HPDGE A+ARA    GI   +S  SS +L+++  AA     +FQLYV 
Sbjct  61   FGIAPVGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEVAAAA-GGPLWFQLYVP  119

Query  280  RDRTKSAALLRQCSANPNVRAIFVTVDAAWPGKREADER--------VKADENLSVPMAP  331
            RDR  +  LL +  A    +A+ +TVD    G+RE D R        +     L + + P
Sbjct  120  RDRELTEDLLERAEA-AGYKALVLTVDTPVLGRRERDLRNGFTLPPRLTPRNLLDLALHP  178

Query  332  ARAKNDKKGG---GLGRVMAGFIDPGLTWDDLVWVRKHTHLPVCLKGVMSADDAILAMQA  388
              A    + G   G    +    DP LTWDDL W+R+    P+ +KG++S +DA  A++A
Sbjct  179  RWALGVLRRGGAGGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAVEA  238

Query  389  GLDGILLSNHGGRNLDTSPPSIVTLLELHKRCPEIFDKMEIYVDSGIRRGTDILKAICLG  448
            G+DGI++SNHGGR LD +P +I  L E+         ++ + VD GIRRGTD+LKA+ LG
Sbjct  239  GVDGIVVSNHGGRQLDGAPATIDALPEIVAAVG---GRIPVLVDGGIRRGTDVLKALALG  295

Query  449  ATAVGMGRSMLFATN-YGQEGVEHLID  474
            A AV +GR  L+     G+ GV H ++
Sbjct  296  ADAVLLGRPFLYGLAAGGEAGVAHALE  322


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 91.9 bits (229),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 30/72 (42%), Positives = 42/72 (58%), Gaps = 0/72 (0%)

Query  48   KEVSKHKSPDDCWIVVNNKVWDVTDFVEEHPGGSTIILKYAGRDATKAYSEVHSPGVIKS  107
            +E+SKH    DCW+ +N KV+DVT F++EHPGG  +IL  AG+DAT A+  +        
Sbjct  3    EELSKHNGDGDCWVAINGKVYDVTKFLKEHPGGEDVILSAAGKDATDAFEAIGHSEDAAE  62

Query  108  NLPPEKYKGILD  119
             L  +   G L 
Sbjct  63   KLLKKYRIGELA  74



Lambda      K        H        a         alpha
   0.319    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00034830

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             316     9e-109


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 316 bits (813),  Expect = 9e-109, Method: Composition-based stats.
 Identities = 104/269 (39%), Positives = 150/269 (56%), Gaps = 17/269 (6%)

Query  1    MPLFVSPAAMAKLIHPDGECAIARACERKGIIQGVSNNSSYTLDQLREAAPSANFFFQLY  60
            +P  ++P  M  L HPDGE A+ARA    GI   +S  SS +L+++  AA     +FQLY
Sbjct  59   LPFGIAPVGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEVAAAA-GGPLWFQLY  117

Query  61   VNRDRTKSAALLRQCSANPNVRAIFVTVDAAWPGKREADER--------VKADENLSVPM  112
            V RDR  +  LL +  A    +A+ +TVD    G+RE D R        +     L + +
Sbjct  118  VPRDRELTEDLLERAEA-AGYKALVLTVDTPVLGRRERDLRNGFTLPPRLTPRNLLDLAL  176

Query  113  APARAKNDKKGG---GLGRVMAGFIDPGLTWDDLVWVRKHTHLPVCLKGVMSADDAILAM  169
             P  A    + G   G    +    DP LTWDDL W+R+    P+ +KG++S +DA  A+
Sbjct  177  HPRWALGVLRRGGAGGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAV  236

Query  170  QAGLDGILLSNHGGRNLDTSPPSIVTLLELHKRCPEIFDKMEIYVDSGIRRGTDILKAIC  229
            +AG+DGI++SNHGGR LD +P +I  L E+         ++ + VD GIRRGTD+LKA+ 
Sbjct  237  EAGVDGIVVSNHGGRQLDGAPATIDALPEIVAAVG---GRIPVLVDGGIRRGTDVLKALA  293

Query  230  LGATAVGMGRSMLFATN-YGQEGVEHLID  257
            LGA AV +GR  L+     G+ GV H ++
Sbjct  294  LGADAVLLGRPFLYGLAAGGEAGVAHALE  322



Lambda      K        H        a         alpha
   0.321    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00030162

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             423     1e-146
CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  91.1    3e-23 


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 423 bits (1090),  Expect = 1e-146, Method: Composition-based stats.
 Identities = 134/355 (38%), Positives = 196/355 (55%), Gaps = 17/355 (5%)

Query  160  ASKTASKKTWAFYSSASTDLITRDANKSCFDRIWFRPRVLRNVRSVDSRTKVLGVDCSMP  219
            A K   +  + +    + D +T   N++ FDRI  RPRVLR+V + D  T +LG   S+P
Sbjct  1    ARKRLPRFAFDYLDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSNRDLSTTLLGQRLSLP  60

Query  220  LFVSPAAMAKLIHPDGECAIARACERKGIIQGVSNNSSYTLDQLREAAPSANFFFQLYVN  279
              ++P  M  L HPDGE A+ARA    GI   +S  SS +L+++  AA     +FQLYV 
Sbjct  61   FGIAPVGMQGLAHPDGELALARAAAAAGIPFVLSTVSSTSLEEVAAAA-GGPLWFQLYVP  119

Query  280  RDRTKSAALLRQCSANPNVRAIFVTVDAAWPGKREADER--------VKADENLSVPMAP  331
            RDR  +  LL +  A    +A+ +TVD    G+RE D R        +     L + + P
Sbjct  120  RDRELTEDLLERAEA-AGYKALVLTVDTPVLGRRERDLRNGFTLPPRLTPRNLLDLALHP  178

Query  332  ARAKNDKKGG---GLGRVMAGFIDPGLTWDDLVWVRKHTHLPVCLKGVMSADDAILAMQA  388
              A    + G   G    +    DP LTWDDL W+R+    P+ +KG++S +DA  A++A
Sbjct  179  RWALGVLRRGGAGGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAVEA  238

Query  389  GLDGILLSNHGGRNLDTSPPSIVTLLELHKRCPEIFDKMEIYVDSGIRRGTDILKAICLG  448
            G+DGI++SNHGGR LD +P +I  L E+         ++ + VD GIRRGTD+LKA+ LG
Sbjct  239  GVDGIVVSNHGGRQLDGAPATIDALPEIVAAVG---GRIPVLVDGGIRRGTDVLKALALG  295

Query  449  ATAVGMGRSMLFATN-YGQEGVEHLIDIMKDELETAMRNTGITSLDEAGPHMVHT  502
            A AV +GR  L+     G+ GV H ++I++DELE  M   G  S+ +  P ++  
Sbjct  296  ADAVLLGRPFLYGLAAGGEAGVAHALEILRDELERTMALLGCKSIADLTPSLLRR  350


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 91.1 bits (227),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 30/72 (42%), Positives = 42/72 (58%), Gaps = 0/72 (0%)

Query  48   KEVSKHKSPDDCWIVVNNKVWDVTDFVEEHPGGSTIILKYAGRDATKAYSEVHSPGVIKS  107
            +E+SKH    DCW+ +N KV+DVT F++EHPGG  +IL  AG+DAT A+  +        
Sbjct  3    EELSKHNGDGDCWVAINGKVYDVTKFLKEHPGGEDVILSAAGKDATDAFEAIGHSEDAAE  62

Query  108  NLPPEKYKGILD  119
             L  +   G L 
Sbjct  63   KLLKKYRIGELA  74



Lambda      K        H        a         alpha
   0.318    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00030164

Length=166
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             198     3e-64


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 198 bits (507),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 60/135 (44%), Positives = 86/135 (64%), Gaps = 4/135 (3%)

Query  13   GGLGRVMAGFIDPGLTWDDLVWVRKHTHLPVCLKGVMSADDAILAMQAGLDGILLSNHGG  72
            GG    +    DP LTWDDL W+R+    P+ +KG++S +DA  A++AG+DGI++SNHGG
Sbjct  191  GGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAVEAGVDGIVVSNHGG  250

Query  73   RNLDTSPPSIVTLLELHKRCPEIFDKMEIYVDSGIRRGTDILKAICLGATAVGMGRSMLF  132
            R LD +P +I  L E+         ++ + VD GIRRGTD+LKA+ LGA AV +GR  L+
Sbjct  251  RQLDGAPATIDALPEIVAAVG---GRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFLY  307

Query  133  ATN-YGQEGVEHLID  146
                 G+ GV H ++
Sbjct  308  GLAAGGEAGVAHALE  322



Lambda      K        H        a         alpha
   0.322    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00030163

Length=166
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase             198     3e-64


>CDD:426029 pfam01070, FMN_dh, FMN-dependent dehydrogenase.  
Length=350

 Score = 198 bits (507),  Expect = 3e-64, Method: Composition-based stats.
 Identities = 60/135 (44%), Positives = 86/135 (64%), Gaps = 4/135 (3%)

Query  13   GGLGRVMAGFIDPGLTWDDLVWVRKHTHLPVCLKGVMSADDAILAMQAGLDGILLSNHGG  72
            GG    +    DP LTWDDL W+R+    P+ +KG++S +DA  A++AG+DGI++SNHGG
Sbjct  191  GGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAVEAGVDGIVVSNHGG  250

Query  73   RNLDTSPPSIVTLLELHKRCPEIFDKMEIYVDSGIRRGTDILKAICLGATAVGMGRSMLF  132
            R LD +P +I  L E+         ++ + VD GIRRGTD+LKA+ LGA AV +GR  L+
Sbjct  251  RQLDGAPATIDALPEIVAAVG---GRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFLY  307

Query  133  ATN-YGQEGVEHLID  146
                 G+ GV H ++
Sbjct  308  GLAAGGEAGVAHALE  322



Lambda      K        H        a         alpha
   0.322    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00030165

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00030166

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00030167

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00030168

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00030169

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00030170

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00030171

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00030172

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00030173

Length=238


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00030174

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease. Aspartyl...  209     2e-64


>CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease.  Aspartyl (acid) 
proteases include pepsins, cathepsins, and renins. Two-domain 
structure, probably arising from ancestral duplication. 
This family does not include the retroviral nor retrotransposon 
proteases (pfam00077), which are much smaller and appear 
to be homologous to a single domain of the eukaryotic asp proteases.
Length=313

 Score = 209 bits (533),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 107/318 (34%), Positives = 155/318 (49%), Gaps = 16/318 (5%)

Query  105  SYFATVRVGSQGQQMWLVLDTGGPNTWVFGSDCT-TVACQRHETFGEAASKSLKLLPLNW  163
             YF T+ +G+  Q+  ++ DTG  + WV  S CT + AC+ H TF  ++S + KL    +
Sbjct  1    EYFGTISIGTPPQKFTVIFDTGSSDLWVPSSYCTKSSACKSHGTFDPSSSSTYKLNGTTF  60

Query  164  AVGYGTGLVSGVLGTDSLSLAGLDV-NMTFGLAKNASTD-FESYPVDGILGLGRSANSNF  221
            ++ YG G  SG LG D++++ GL + N  FGLA       FE    DGILGLG  + S  
Sbjct  61   SISYGDGSASGFLGQDTVTVGGLTITNQEFGLATKEPGSFFEYAKFDGILGLGFPSISAV  120

Query  222  NTPSFMETVATQRLLKSNIIGFSFSRNSDGARDGAANFGDLDTTRFTGDIVYTNTTGDSN  281
                  + + +Q L+ S    FS   NS  A  G   FG +D +++TG + Y   T    
Sbjct  121  GATPVFDNLKSQGLIDSPA--FSVYLNSPDAAGGEIIFGGVDPSKYTGSLTYVPVT-SQG  177

Query  282  NWRIPLDDASVNG-TPCRFVNKTAVIDTGTSYAMLPPKDATVLHNLIPGAVTTSHGQNFT  340
             W+I LD  +V G T        A++DTGTS    P    + +   +  +   S    + 
Sbjct  178  YWQITLDSVTVGGSTSACSSGCQAILDTGTSLLYGPTSIVSKIAKAVGASS--SEYGEYV  235

Query  341  LPCNST---AVVQVSFSGLSYNISPKDYV--GPAYGSACLSTIVGQALYGDDVWLLGDVF  395
            + C+S      +     G    + P  YV      GS CLS        G  +W+LGDVF
Sbjct  236  VDCDSISTLPDITFVIGGAKITVPPSAYVLQNSQGGSTCLSGFQPPP--GGPLWILGDVF  293

Query  396  LKNVYSVFDYDNHRIGFA  413
            L++ Y VFD DN+RIGFA
Sbjct  294  LRSAYVVFDRDNNRIGFA  311



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00030175

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease. Aspartyl...  209     2e-64


>CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease.  Aspartyl (acid) 
proteases include pepsins, cathepsins, and renins. Two-domain 
structure, probably arising from ancestral duplication. 
This family does not include the retroviral nor retrotransposon 
proteases (pfam00077), which are much smaller and appear 
to be homologous to a single domain of the eukaryotic asp proteases.
Length=313

 Score = 209 bits (533),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 107/318 (34%), Positives = 155/318 (49%), Gaps = 16/318 (5%)

Query  105  SYFATVRVGSQGQQMWLVLDTGGPNTWVFGSDCT-TVACQRHETFGEAASKSLKLLPLNW  163
             YF T+ +G+  Q+  ++ DTG  + WV  S CT + AC+ H TF  ++S + KL    +
Sbjct  1    EYFGTISIGTPPQKFTVIFDTGSSDLWVPSSYCTKSSACKSHGTFDPSSSSTYKLNGTTF  60

Query  164  AVGYGTGLVSGVLGTDSLSLAGLDV-NMTFGLAKNASTD-FESYPVDGILGLGRSANSNF  221
            ++ YG G  SG LG D++++ GL + N  FGLA       FE    DGILGLG  + S  
Sbjct  61   SISYGDGSASGFLGQDTVTVGGLTITNQEFGLATKEPGSFFEYAKFDGILGLGFPSISAV  120

Query  222  NTPSFMETVATQRLLKSNIIGFSFSRNSDGARDGAANFGDLDTTRFTGDIVYTNTTGDSN  281
                  + + +Q L+ S    FS   NS  A  G   FG +D +++TG + Y   T    
Sbjct  121  GATPVFDNLKSQGLIDSPA--FSVYLNSPDAAGGEIIFGGVDPSKYTGSLTYVPVT-SQG  177

Query  282  NWRIPLDDASVNG-TPCRFVNKTAVIDTGTSYAMLPPKDATVLHNLIPGAVTTSHGQNFT  340
             W+I LD  +V G T        A++DTGTS    P    + +   +  +   S    + 
Sbjct  178  YWQITLDSVTVGGSTSACSSGCQAILDTGTSLLYGPTSIVSKIAKAVGASS--SEYGEYV  235

Query  341  LPCNST---AVVQVSFSGLSYNISPKDYV--GPAYGSACLSTIVGQALYGDDVWLLGDVF  395
            + C+S      +     G    + P  YV      GS CLS        G  +W+LGDVF
Sbjct  236  VDCDSISTLPDITFVIGGAKITVPPSAYVLQNSQGGSTCLSGFQPPP--GGPLWILGDVF  293

Query  396  LKNVYSVFDYDNHRIGFA  413
            L++ Y VFD DN+RIGFA
Sbjct  294  LRSAYVVFDRDNNRIGFA  311



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00034831

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease. Aspartyl...  209     2e-64


>CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease.  Aspartyl (acid) 
proteases include pepsins, cathepsins, and renins. Two-domain 
structure, probably arising from ancestral duplication. 
This family does not include the retroviral nor retrotransposon 
proteases (pfam00077), which are much smaller and appear 
to be homologous to a single domain of the eukaryotic asp proteases.
Length=313

 Score = 209 bits (533),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 107/318 (34%), Positives = 155/318 (49%), Gaps = 16/318 (5%)

Query  105  SYFATVRVGSQGQQMWLVLDTGGPNTWVFGSDCT-TVACQRHETFGEAASKSLKLLPLNW  163
             YF T+ +G+  Q+  ++ DTG  + WV  S CT + AC+ H TF  ++S + KL    +
Sbjct  1    EYFGTISIGTPPQKFTVIFDTGSSDLWVPSSYCTKSSACKSHGTFDPSSSSTYKLNGTTF  60

Query  164  AVGYGTGLVSGVLGTDSLSLAGLDV-NMTFGLAKNASTD-FESYPVDGILGLGRSANSNF  221
            ++ YG G  SG LG D++++ GL + N  FGLA       FE    DGILGLG  + S  
Sbjct  61   SISYGDGSASGFLGQDTVTVGGLTITNQEFGLATKEPGSFFEYAKFDGILGLGFPSISAV  120

Query  222  NTPSFMETVATQRLLKSNIIGFSFSRNSDGARDGAANFGDLDTTRFTGDIVYTNTTGDSN  281
                  + + +Q L+ S    FS   NS  A  G   FG +D +++TG + Y   T    
Sbjct  121  GATPVFDNLKSQGLIDSPA--FSVYLNSPDAAGGEIIFGGVDPSKYTGSLTYVPVT-SQG  177

Query  282  NWRIPLDDASVNG-TPCRFVNKTAVIDTGTSYAMLPPKDATVLHNLIPGAVTTSHGQNFT  340
             W+I LD  +V G T        A++DTGTS    P    + +   +  +   S    + 
Sbjct  178  YWQITLDSVTVGGSTSACSSGCQAILDTGTSLLYGPTSIVSKIAKAVGASS--SEYGEYV  235

Query  341  LPCNST---AVVQVSFSGLSYNISPKDYV--GPAYGSACLSTIVGQALYGDDVWLLGDVF  395
            + C+S      +     G    + P  YV      GS CLS        G  +W+LGDVF
Sbjct  236  VDCDSISTLPDITFVIGGAKITVPPSAYVLQNSQGGSTCLSGFQPPP--GGPLWILGDVF  293

Query  396  LKNVYSVFDYDNHRIGFA  413
            L++ Y VFD DN+RIGFA
Sbjct  294  LRSAYVVFDRDNNRIGFA  311



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00034832

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease. Aspartyl...  209     2e-64


>CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease.  Aspartyl (acid) 
proteases include pepsins, cathepsins, and renins. Two-domain 
structure, probably arising from ancestral duplication. 
This family does not include the retroviral nor retrotransposon 
proteases (pfam00077), which are much smaller and appear 
to be homologous to a single domain of the eukaryotic asp proteases.
Length=313

 Score = 209 bits (533),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 107/318 (34%), Positives = 155/318 (49%), Gaps = 16/318 (5%)

Query  105  SYFATVRVGSQGQQMWLVLDTGGPNTWVFGSDCT-TVACQRHETFGEAASKSLKLLPLNW  163
             YF T+ +G+  Q+  ++ DTG  + WV  S CT + AC+ H TF  ++S + KL    +
Sbjct  1    EYFGTISIGTPPQKFTVIFDTGSSDLWVPSSYCTKSSACKSHGTFDPSSSSTYKLNGTTF  60

Query  164  AVGYGTGLVSGVLGTDSLSLAGLDV-NMTFGLAKNASTD-FESYPVDGILGLGRSANSNF  221
            ++ YG G  SG LG D++++ GL + N  FGLA       FE    DGILGLG  + S  
Sbjct  61   SISYGDGSASGFLGQDTVTVGGLTITNQEFGLATKEPGSFFEYAKFDGILGLGFPSISAV  120

Query  222  NTPSFMETVATQRLLKSNIIGFSFSRNSDGARDGAANFGDLDTTRFTGDIVYTNTTGDSN  281
                  + + +Q L+ S    FS   NS  A  G   FG +D +++TG + Y   T    
Sbjct  121  GATPVFDNLKSQGLIDSPA--FSVYLNSPDAAGGEIIFGGVDPSKYTGSLTYVPVT-SQG  177

Query  282  NWRIPLDDASVNG-TPCRFVNKTAVIDTGTSYAMLPPKDATVLHNLIPGAVTTSHGQNFT  340
             W+I LD  +V G T        A++DTGTS    P    + +   +  +   S    + 
Sbjct  178  YWQITLDSVTVGGSTSACSSGCQAILDTGTSLLYGPTSIVSKIAKAVGASS--SEYGEYV  235

Query  341  LPCNST---AVVQVSFSGLSYNISPKDYV--GPAYGSACLSTIVGQALYGDDVWLLGDVF  395
            + C+S      +     G    + P  YV      GS CLS        G  +W+LGDVF
Sbjct  236  VDCDSISTLPDITFVIGGAKITVPPSAYVLQNSQGGSTCLSGFQPPP--GGPLWILGDVF  293

Query  396  LKNVYSVFDYDNHRIGFA  413
            L++ Y VFD DN+RIGFA
Sbjct  294  LRSAYVVFDRDNNRIGFA  311



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00030180

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease. Aspartyl...  209     2e-64


>CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease.  Aspartyl (acid) 
proteases include pepsins, cathepsins, and renins. Two-domain 
structure, probably arising from ancestral duplication. 
This family does not include the retroviral nor retrotransposon 
proteases (pfam00077), which are much smaller and appear 
to be homologous to a single domain of the eukaryotic asp proteases.
Length=313

 Score = 209 bits (533),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 107/318 (34%), Positives = 155/318 (49%), Gaps = 16/318 (5%)

Query  105  SYFATVRVGSQGQQMWLVLDTGGPNTWVFGSDCT-TVACQRHETFGEAASKSLKLLPLNW  163
             YF T+ +G+  Q+  ++ DTG  + WV  S CT + AC+ H TF  ++S + KL    +
Sbjct  1    EYFGTISIGTPPQKFTVIFDTGSSDLWVPSSYCTKSSACKSHGTFDPSSSSTYKLNGTTF  60

Query  164  AVGYGTGLVSGVLGTDSLSLAGLDV-NMTFGLAKNASTD-FESYPVDGILGLGRSANSNF  221
            ++ YG G  SG LG D++++ GL + N  FGLA       FE    DGILGLG  + S  
Sbjct  61   SISYGDGSASGFLGQDTVTVGGLTITNQEFGLATKEPGSFFEYAKFDGILGLGFPSISAV  120

Query  222  NTPSFMETVATQRLLKSNIIGFSFSRNSDGARDGAANFGDLDTTRFTGDIVYTNTTGDSN  281
                  + + +Q L+ S    FS   NS  A  G   FG +D +++TG + Y   T    
Sbjct  121  GATPVFDNLKSQGLIDSPA--FSVYLNSPDAAGGEIIFGGVDPSKYTGSLTYVPVT-SQG  177

Query  282  NWRIPLDDASVNG-TPCRFVNKTAVIDTGTSYAMLPPKDATVLHNLIPGAVTTSHGQNFT  340
             W+I LD  +V G T        A++DTGTS    P    + +   +  +   S    + 
Sbjct  178  YWQITLDSVTVGGSTSACSSGCQAILDTGTSLLYGPTSIVSKIAKAVGASS--SEYGEYV  235

Query  341  LPCNST---AVVQVSFSGLSYNISPKDYV--GPAYGSACLSTIVGQALYGDDVWLLGDVF  395
            + C+S      +     G    + P  YV      GS CLS        G  +W+LGDVF
Sbjct  236  VDCDSISTLPDITFVIGGAKITVPPSAYVLQNSQGGSTCLSGFQPPP--GGPLWILGDVF  293

Query  396  LKNVYSVFDYDNHRIGFA  413
            L++ Y VFD DN+RIGFA
Sbjct  294  LRSAYVVFDRDNNRIGFA  311



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00030176

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease. Aspartyl...  209     2e-64


>CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease.  Aspartyl (acid) 
proteases include pepsins, cathepsins, and renins. Two-domain 
structure, probably arising from ancestral duplication. 
This family does not include the retroviral nor retrotransposon 
proteases (pfam00077), which are much smaller and appear 
to be homologous to a single domain of the eukaryotic asp proteases.
Length=313

 Score = 209 bits (533),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 107/318 (34%), Positives = 155/318 (49%), Gaps = 16/318 (5%)

Query  105  SYFATVRVGSQGQQMWLVLDTGGPNTWVFGSDCT-TVACQRHETFGEAASKSLKLLPLNW  163
             YF T+ +G+  Q+  ++ DTG  + WV  S CT + AC+ H TF  ++S + KL    +
Sbjct  1    EYFGTISIGTPPQKFTVIFDTGSSDLWVPSSYCTKSSACKSHGTFDPSSSSTYKLNGTTF  60

Query  164  AVGYGTGLVSGVLGTDSLSLAGLDV-NMTFGLAKNASTD-FESYPVDGILGLGRSANSNF  221
            ++ YG G  SG LG D++++ GL + N  FGLA       FE    DGILGLG  + S  
Sbjct  61   SISYGDGSASGFLGQDTVTVGGLTITNQEFGLATKEPGSFFEYAKFDGILGLGFPSISAV  120

Query  222  NTPSFMETVATQRLLKSNIIGFSFSRNSDGARDGAANFGDLDTTRFTGDIVYTNTTGDSN  281
                  + + +Q L+ S    FS   NS  A  G   FG +D +++TG + Y   T    
Sbjct  121  GATPVFDNLKSQGLIDSPA--FSVYLNSPDAAGGEIIFGGVDPSKYTGSLTYVPVT-SQG  177

Query  282  NWRIPLDDASVNG-TPCRFVNKTAVIDTGTSYAMLPPKDATVLHNLIPGAVTTSHGQNFT  340
             W+I LD  +V G T        A++DTGTS    P    + +   +  +   S    + 
Sbjct  178  YWQITLDSVTVGGSTSACSSGCQAILDTGTSLLYGPTSIVSKIAKAVGASS--SEYGEYV  235

Query  341  LPCNST---AVVQVSFSGLSYNISPKDYV--GPAYGSACLSTIVGQALYGDDVWLLGDVF  395
            + C+S      +     G    + P  YV      GS CLS        G  +W+LGDVF
Sbjct  236  VDCDSISTLPDITFVIGGAKITVPPSAYVLQNSQGGSTCLSGFQPPP--GGPLWILGDVF  293

Query  396  LKNVYSVFDYDNHRIGFA  413
            L++ Y VFD DN+RIGFA
Sbjct  294  LRSAYVVFDRDNNRIGFA  311



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00030177

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease. Aspartyl...  209     2e-64


>CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease.  Aspartyl (acid) 
proteases include pepsins, cathepsins, and renins. Two-domain 
structure, probably arising from ancestral duplication. 
This family does not include the retroviral nor retrotransposon 
proteases (pfam00077), which are much smaller and appear 
to be homologous to a single domain of the eukaryotic asp proteases.
Length=313

 Score = 209 bits (533),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 107/318 (34%), Positives = 155/318 (49%), Gaps = 16/318 (5%)

Query  105  SYFATVRVGSQGQQMWLVLDTGGPNTWVFGSDCT-TVACQRHETFGEAASKSLKLLPLNW  163
             YF T+ +G+  Q+  ++ DTG  + WV  S CT + AC+ H TF  ++S + KL    +
Sbjct  1    EYFGTISIGTPPQKFTVIFDTGSSDLWVPSSYCTKSSACKSHGTFDPSSSSTYKLNGTTF  60

Query  164  AVGYGTGLVSGVLGTDSLSLAGLDV-NMTFGLAKNASTD-FESYPVDGILGLGRSANSNF  221
            ++ YG G  SG LG D++++ GL + N  FGLA       FE    DGILGLG  + S  
Sbjct  61   SISYGDGSASGFLGQDTVTVGGLTITNQEFGLATKEPGSFFEYAKFDGILGLGFPSISAV  120

Query  222  NTPSFMETVATQRLLKSNIIGFSFSRNSDGARDGAANFGDLDTTRFTGDIVYTNTTGDSN  281
                  + + +Q L+ S    FS   NS  A  G   FG +D +++TG + Y   T    
Sbjct  121  GATPVFDNLKSQGLIDSPA--FSVYLNSPDAAGGEIIFGGVDPSKYTGSLTYVPVT-SQG  177

Query  282  NWRIPLDDASVNG-TPCRFVNKTAVIDTGTSYAMLPPKDATVLHNLIPGAVTTSHGQNFT  340
             W+I LD  +V G T        A++DTGTS    P    + +   +  +   S    + 
Sbjct  178  YWQITLDSVTVGGSTSACSSGCQAILDTGTSLLYGPTSIVSKIAKAVGASS--SEYGEYV  235

Query  341  LPCNST---AVVQVSFSGLSYNISPKDYV--GPAYGSACLSTIVGQALYGDDVWLLGDVF  395
            + C+S      +     G    + P  YV      GS CLS        G  +W+LGDVF
Sbjct  236  VDCDSISTLPDITFVIGGAKITVPPSAYVLQNSQGGSTCLSGFQPPP--GGPLWILGDVF  293

Query  396  LKNVYSVFDYDNHRIGFA  413
            L++ Y VFD DN+RIGFA
Sbjct  294  LRSAYVVFDRDNNRIGFA  311



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00034833

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease. Aspartyl...  209     2e-64


>CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease.  Aspartyl (acid) 
proteases include pepsins, cathepsins, and renins. Two-domain 
structure, probably arising from ancestral duplication. 
This family does not include the retroviral nor retrotransposon 
proteases (pfam00077), which are much smaller and appear 
to be homologous to a single domain of the eukaryotic asp proteases.
Length=313

 Score = 209 bits (533),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 107/318 (34%), Positives = 155/318 (49%), Gaps = 16/318 (5%)

Query  105  SYFATVRVGSQGQQMWLVLDTGGPNTWVFGSDCT-TVACQRHETFGEAASKSLKLLPLNW  163
             YF T+ +G+  Q+  ++ DTG  + WV  S CT + AC+ H TF  ++S + KL    +
Sbjct  1    EYFGTISIGTPPQKFTVIFDTGSSDLWVPSSYCTKSSACKSHGTFDPSSSSTYKLNGTTF  60

Query  164  AVGYGTGLVSGVLGTDSLSLAGLDV-NMTFGLAKNASTD-FESYPVDGILGLGRSANSNF  221
            ++ YG G  SG LG D++++ GL + N  FGLA       FE    DGILGLG  + S  
Sbjct  61   SISYGDGSASGFLGQDTVTVGGLTITNQEFGLATKEPGSFFEYAKFDGILGLGFPSISAV  120

Query  222  NTPSFMETVATQRLLKSNIIGFSFSRNSDGARDGAANFGDLDTTRFTGDIVYTNTTGDSN  281
                  + + +Q L+ S    FS   NS  A  G   FG +D +++TG + Y   T    
Sbjct  121  GATPVFDNLKSQGLIDSPA--FSVYLNSPDAAGGEIIFGGVDPSKYTGSLTYVPVT-SQG  177

Query  282  NWRIPLDDASVNG-TPCRFVNKTAVIDTGTSYAMLPPKDATVLHNLIPGAVTTSHGQNFT  340
             W+I LD  +V G T        A++DTGTS    P    + +   +  +   S    + 
Sbjct  178  YWQITLDSVTVGGSTSACSSGCQAILDTGTSLLYGPTSIVSKIAKAVGASS--SEYGEYV  235

Query  341  LPCNST---AVVQVSFSGLSYNISPKDYV--GPAYGSACLSTIVGQALYGDDVWLLGDVF  395
            + C+S      +     G    + P  YV      GS CLS        G  +W+LGDVF
Sbjct  236  VDCDSISTLPDITFVIGGAKITVPPSAYVLQNSQGGSTCLSGFQPPP--GGPLWILGDVF  293

Query  396  LKNVYSVFDYDNHRIGFA  413
            L++ Y VFD DN+RIGFA
Sbjct  294  LRSAYVVFDRDNNRIGFA  311



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00030178

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease. Aspartyl...  209     2e-64


>CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease.  Aspartyl (acid) 
proteases include pepsins, cathepsins, and renins. Two-domain 
structure, probably arising from ancestral duplication. 
This family does not include the retroviral nor retrotransposon 
proteases (pfam00077), which are much smaller and appear 
to be homologous to a single domain of the eukaryotic asp proteases.
Length=313

 Score = 209 bits (533),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 107/318 (34%), Positives = 155/318 (49%), Gaps = 16/318 (5%)

Query  105  SYFATVRVGSQGQQMWLVLDTGGPNTWVFGSDCT-TVACQRHETFGEAASKSLKLLPLNW  163
             YF T+ +G+  Q+  ++ DTG  + WV  S CT + AC+ H TF  ++S + KL    +
Sbjct  1    EYFGTISIGTPPQKFTVIFDTGSSDLWVPSSYCTKSSACKSHGTFDPSSSSTYKLNGTTF  60

Query  164  AVGYGTGLVSGVLGTDSLSLAGLDV-NMTFGLAKNASTD-FESYPVDGILGLGRSANSNF  221
            ++ YG G  SG LG D++++ GL + N  FGLA       FE    DGILGLG  + S  
Sbjct  61   SISYGDGSASGFLGQDTVTVGGLTITNQEFGLATKEPGSFFEYAKFDGILGLGFPSISAV  120

Query  222  NTPSFMETVATQRLLKSNIIGFSFSRNSDGARDGAANFGDLDTTRFTGDIVYTNTTGDSN  281
                  + + +Q L+ S    FS   NS  A  G   FG +D +++TG + Y   T    
Sbjct  121  GATPVFDNLKSQGLIDSPA--FSVYLNSPDAAGGEIIFGGVDPSKYTGSLTYVPVT-SQG  177

Query  282  NWRIPLDDASVNG-TPCRFVNKTAVIDTGTSYAMLPPKDATVLHNLIPGAVTTSHGQNFT  340
             W+I LD  +V G T        A++DTGTS    P    + +   +  +   S    + 
Sbjct  178  YWQITLDSVTVGGSTSACSSGCQAILDTGTSLLYGPTSIVSKIAKAVGASS--SEYGEYV  235

Query  341  LPCNST---AVVQVSFSGLSYNISPKDYV--GPAYGSACLSTIVGQALYGDDVWLLGDVF  395
            + C+S      +     G    + P  YV      GS CLS        G  +W+LGDVF
Sbjct  236  VDCDSISTLPDITFVIGGAKITVPPSAYVLQNSQGGSTCLSGFQPPP--GGPLWILGDVF  293

Query  396  LKNVYSVFDYDNHRIGFA  413
            L++ Y VFD DN+RIGFA
Sbjct  294  LRSAYVVFDRDNNRIGFA  311



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00030179

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease. Aspartyl...  209     2e-64


>CDD:394983 pfam00026, Asp, Eukaryotic aspartyl protease.  Aspartyl (acid) 
proteases include pepsins, cathepsins, and renins. Two-domain 
structure, probably arising from ancestral duplication. 
This family does not include the retroviral nor retrotransposon 
proteases (pfam00077), which are much smaller and appear 
to be homologous to a single domain of the eukaryotic asp proteases.
Length=313

 Score = 209 bits (533),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 107/318 (34%), Positives = 155/318 (49%), Gaps = 16/318 (5%)

Query  105  SYFATVRVGSQGQQMWLVLDTGGPNTWVFGSDCT-TVACQRHETFGEAASKSLKLLPLNW  163
             YF T+ +G+  Q+  ++ DTG  + WV  S CT + AC+ H TF  ++S + KL    +
Sbjct  1    EYFGTISIGTPPQKFTVIFDTGSSDLWVPSSYCTKSSACKSHGTFDPSSSSTYKLNGTTF  60

Query  164  AVGYGTGLVSGVLGTDSLSLAGLDV-NMTFGLAKNASTD-FESYPVDGILGLGRSANSNF  221
            ++ YG G  SG LG D++++ GL + N  FGLA       FE    DGILGLG  + S  
Sbjct  61   SISYGDGSASGFLGQDTVTVGGLTITNQEFGLATKEPGSFFEYAKFDGILGLGFPSISAV  120

Query  222  NTPSFMETVATQRLLKSNIIGFSFSRNSDGARDGAANFGDLDTTRFTGDIVYTNTTGDSN  281
                  + + +Q L+ S    FS   NS  A  G   FG +D +++TG + Y   T    
Sbjct  121  GATPVFDNLKSQGLIDSPA--FSVYLNSPDAAGGEIIFGGVDPSKYTGSLTYVPVT-SQG  177

Query  282  NWRIPLDDASVNG-TPCRFVNKTAVIDTGTSYAMLPPKDATVLHNLIPGAVTTSHGQNFT  340
             W+I LD  +V G T        A++DTGTS    P    + +   +  +   S    + 
Sbjct  178  YWQITLDSVTVGGSTSACSSGCQAILDTGTSLLYGPTSIVSKIAKAVGASS--SEYGEYV  235

Query  341  LPCNST---AVVQVSFSGLSYNISPKDYV--GPAYGSACLSTIVGQALYGDDVWLLGDVF  395
            + C+S      +     G    + P  YV      GS CLS        G  +W+LGDVF
Sbjct  236  VDCDSISTLPDITFVIGGAKITVPPSAYVLQNSQGGSTCLSGFQPPP--GGPLWILGDVF  293

Query  396  LKNVYSVFDYDNHRIGFA  413
            L++ Y VFD DN+RIGFA
Sbjct  294  LRSAYVVFDRDNNRIGFA  311



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00030181

Length=336


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00030182

Length=167
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429993 pfam08432, Vfa1, AAA-ATPase Vps4-associated protein 1....  121     5e-36


>CDD:429993 pfam08432, Vfa1, AAA-ATPase Vps4-associated protein 1.  Vps Four-Associated 
1, Vfa1, in yeast, is an endosomal protein that 
interacts with the AAA-ATPase Vps4. It would seem to be involved 
in regulating the trafficking of other proteins to the 
endocytic vacuole. There is a CCCH zinc finger at the N-terminus.
Length=179

 Score = 121 bits (305),  Expect = 5e-36, Method: Composition-based stats.
 Identities = 70/185 (38%), Positives = 102/185 (55%), Gaps = 31/185 (17%)

Query  5    NVWHLRRVADTAAKACFVCYKPSASVLITPDNK------------------------AAA  40
            N++ LR+VA+  AK C +CYKP+ +VLITPDNK                        A A
Sbjct  1    NLYTLRKVAEKDAKPCLICYKPTTTVLITPDNKDFFYVCPSHLKDPQFATPIYDEEYAEA  60

Query  41   KAKQEALAREIEIVKKEY-EEKQRRKKEKEKEKKADDEPKNSDKKSKKSDKESDSGAKSL  99
              K++ L  EIE VKKEY E+++++K++++  KK D + K+ DK   K   +     + L
Sbjct  61   AKKKKELEEEIEKVKKEYEEKQKKKKEKEKSWKKKDKKDKDKDKDKDKDKDKEKEKLEEL  120

Query  100  EKERDEKIESLTKSASSSATDDSPRIFALHKNFYQMRVDRQCNIEMAKRNRQRLQDPSAF  159
            +KE D+ ++ L             + + LHK+FYQ R+DR+   EMAK NR+RL DP  F
Sbjct  121  KKEYDKTLDELATLEPR------VKKYKLHKDFYQSRLDRKRQAEMAKENRERLNDPGFF  174

Query  160  PSVPS  164
            PSVP 
Sbjct  175  PSVPK  179



Lambda      K        H        a         alpha
   0.307    0.122    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00034834

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00030184

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00034836

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00034835

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00030183

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00030185

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00030186

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00034838

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00034837

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00030187

Length=238


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00030188

Length=238


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00030190

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.146    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00030192

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00030191

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00030193

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462824 pfam09531, Ndc1_Nup, Nucleoporin protein Ndc1-Nup. Ndc...  357     1e-119


>CDD:462824 pfam09531, Ndc1_Nup, Nucleoporin protein Ndc1-Nup.  Ndc1 is a 
nucleoporin protein that is a component of the Nuclear Pore 
Complex, and, in fungi, also of the Spindle Pole Body. It consists 
of six transmembrane segments, three lumenal loops, 
both concentrated at the N-terminus and cytoplasmic domains 
largely at the C-terminus, all of which are well conserved.
Length=522

 Score = 357 bits (919),  Expect = 1e-119, Method: Composition-based stats.
 Identities = 162/439 (37%), Positives = 219/439 (50%), Gaps = 95/439 (22%)

Query  1    MIRGGLARSALVAAICPFAYVLLLRRPAWSFTLYFAKLFWNFPRSAADPPGVIPDLGFGL  60
            +++  L  S +   + P  Y L LR   WS  L   + F N PRS A PP         L
Sbjct  179  ILKKSLILSLISTLVSPIVYYLFLRSFIWSTALS--RPFLNLPRSNAPPPLDSLPFNLSL  236

Query  61   LIRTAISGALLTFCWQFANLFFSMFISKEPLKLGQPLTAEAKDPNGSLLTGLKAKKETVK  120
            L+RT + G LL   W+ ANL F +++++ PLK G+P+++E+KDPNG+LL+GLK+KK  VK
Sbjct  237  LLRTWLLGFLLLLLWELANLLFDIYLTEGPLKKGKPISSESKDPNGTLLSGLKSKKPFVK  296

Query  121  AFAFWELCLISQQFPDRRKAIFNDIDREGGSTWTQILQSATEVIEGVSNRINEKKNPTSN  180
             FAF EL  I+Q FPDRRKAIF+DIDR+GG  W+QIL     VI+ ++ RIN        
Sbjct  297  LFAFQELAYIAQSFPDRRKAIFSDIDRKGGPNWSQILDECLSVIKELTTRIN--------  348

Query  181  VKPEEQTDKSQPVLHTLPRLAEPPKEDNIFASSPKAVSRHEKIGEAFSSAAKKYGQSPDW  240
                                                              AK  GQSP  
Sbjct  349  --------------------------------------------------AKSPGQSPSP  358

Query  241  TPAARARARDVFDRASSVVLSPERKQKLLASSRELKMLTGPTSKPENVHPLLAQVLRSPV  300
                  RAR + + AS  +LSPE++Q LL+                             +
Sbjct  359  PARLSPRARKLLETASDRLLSPEQQQALLSPL---------------------------I  391

Query  301  GLILRQNYARRLSGIVLGTPHANLSSIIDAIESLTRLLIASLAEDQYGKVQSDVPRVVRL  360
            G + RQ   RRL  +V     AN   II+AIE+L+ LL+ASL EDQYG VQ DVP ++R 
Sbjct  392  GYLFRQTLRRRLEALV-----ANPQLIINAIEALSNLLVASLTEDQYGVVQRDVPEILRT  446

Query  361  FTETITVLEPFINGGLDAHWTDVNFPPSSDPDAQAEARRVPEVDLVLDTVRSCLRDLLSA  420
             T  I  L+ F +  L AHWTDV  P  S   A+     + EVD +LD +++ L  +++A
Sbjct  447  LTRLIEALDKFKD-QLPAHWTDVEGPAQS--SAREVPSLLDEVDALLDALKTGLYRIVTA  503

Query  421  FNLYFKDIGLVGKDLRLAK  439
            F  Y  D+GL  +DLRLAK
Sbjct  504  FGPYLNDLGLSPEDLRLAK  522



Lambda      K        H        a         alpha
   0.319    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 550599736


Query= TCONS_00030194

Length=677


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 861277360


Query= TCONS_00030195

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465732 pfam18376, MDD_C, Mevalonate 5-diphosphate decarboxyla...  288     6e-98


>CDD:465732 pfam18376, MDD_C, Mevalonate 5-diphosphate decarboxylase C-terminal 
domain.  Mevalonate diphosphate decarboxylase (EC:4.1.1.33) 
catalyzes the ATP dependent decarboxylation of mevalonate 
5-diphosphate (MVAPP) to form isopentenyl 5-diphosphate. 
The reaction is required for production of polyisoprenoids 
and sterols from acetyl-CoA. This entry represents the C-terminal 
domain of the mevalonate 5-diphosphate decarboxylase 
enzyme which is a member of the GHMP kinase superfamily.
Length=186

 Score = 288 bits (739),  Expect = 6e-98, Method: Composition-based stats.
 Identities = 98/189 (52%), Positives = 121/189 (64%), Gaps = 3/189 (2%)

Query  202  AIILVVSAEKKDVPSTEGMQTTVATSSLFATRAASVVPERMAAIETAIQNKDFATFAEIT  261
             +ILVVS EKK+V ST GMQ +V TS L   RA  VVPERM A+E AI  KDF TFAEIT
Sbjct  1    VLILVVSDEKKEVSSTSGMQRSVETSPLLKHRAEHVVPERMEAMEKAILAKDFETFAEIT  60

Query  262  MRDSNSFHATCLDSWPPIFYMNDVSRAAVRLVHDINRAVGRTVCAYTFDAGPNAVIYYLE  321
            M+DSN FHA CLD++PPIFY+ND SRA ++LVH  N   GR   AYTFDAGPNAV+Y LE
Sbjct  61   MKDSNQFHAVCLDTYPPIFYLNDTSRAIIQLVHAYNEFAGRIKVAYTFDAGPNAVLYLLE  120

Query  322  KDSEVVAGTIKAILGPNTEGFDGPFYDILKNVTASVVPLEKVDSRAVEILKNGISRVILT  381
            KD   V   +K    P+T   +G  +     V  S +  E   S A++ +  G+  +I T
Sbjct  121  KDVPKVLSLLKHFFPPST---NGDQFFKGLPVLPSELSEELKASLAMKPIPGGVKYIIHT  177

Query  382  GVGEGPISV  390
             VG+GP  +
Sbjct  178  KVGDGPRVL  186



Lambda      K        H        a         alpha
   0.315    0.129    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00030196

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465732 pfam18376, MDD_C, Mevalonate 5-diphosphate decarboxyla...  288     6e-98


>CDD:465732 pfam18376, MDD_C, Mevalonate 5-diphosphate decarboxylase C-terminal 
domain.  Mevalonate diphosphate decarboxylase (EC:4.1.1.33) 
catalyzes the ATP dependent decarboxylation of mevalonate 
5-diphosphate (MVAPP) to form isopentenyl 5-diphosphate. 
The reaction is required for production of polyisoprenoids 
and sterols from acetyl-CoA. This entry represents the C-terminal 
domain of the mevalonate 5-diphosphate decarboxylase 
enzyme which is a member of the GHMP kinase superfamily.
Length=186

 Score = 288 bits (739),  Expect = 6e-98, Method: Composition-based stats.
 Identities = 98/189 (52%), Positives = 121/189 (64%), Gaps = 3/189 (2%)

Query  202  AIILVVSAEKKDVPSTEGMQTTVATSSLFATRAASVVPERMAAIETAIQNKDFATFAEIT  261
             +ILVVS EKK+V ST GMQ +V TS L   RA  VVPERM A+E AI  KDF TFAEIT
Sbjct  1    VLILVVSDEKKEVSSTSGMQRSVETSPLLKHRAEHVVPERMEAMEKAILAKDFETFAEIT  60

Query  262  MRDSNSFHATCLDSWPPIFYMNDVSRAAVRLVHDINRAVGRTVCAYTFDAGPNAVIYYLE  321
            M+DSN FHA CLD++PPIFY+ND SRA ++LVH  N   GR   AYTFDAGPNAV+Y LE
Sbjct  61   MKDSNQFHAVCLDTYPPIFYLNDTSRAIIQLVHAYNEFAGRIKVAYTFDAGPNAVLYLLE  120

Query  322  KDSEVVAGTIKAILGPNTEGFDGPFYDILKNVTASVVPLEKVDSRAVEILKNGISRVILT  381
            KD   V   +K    P+T   +G  +     V  S +  E   S A++ +  G+  +I T
Sbjct  121  KDVPKVLSLLKHFFPPST---NGDQFFKGLPVLPSELSEELKASLAMKPIPGGVKYIIHT  177

Query  382  GVGEGPISV  390
             VG+GP  +
Sbjct  178  KVGDGPRVL  186



Lambda      K        H        a         alpha
   0.315    0.129    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00030197

Length=624
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain...  303     9e-100


>CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain.  Mtr4 
is the essential RNA helicase, and is an exosome-activating 
cofactor. This arch domain is carried in Mtr4 and Ski2 (the 
cytosolic homolog of Mtr4). The arch domain is required for 
proper 5.8S rRNA processing, and appears to function independently 
of canonical helicase activity.
Length=267

 Score = 303 bits (778),  Expect = 9e-100, Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 154/224 (69%), Gaps = 6/224 (3%)

Query  359  EFMLERCFYQFQNTAGVADLEKQLQEFEEKRANMTIPDEGTIREYYELRTQLDKYADDIQ  418
            E+ML+R F QFQN A + +LEK+L+E E++ A++ IPDE  I+EYY+LR QL+K  +DI+
Sbjct  1    EYMLKRSFSQFQNQASLPELEKKLKELEKELASIKIPDEEDIKEYYDLRQQLEKLNEDIR  60

Query  419  AVISHPDYSLPFMLPGRLVHIK-HKDKDFGWGVVVNYKQRKPPKNSTEEIPRDKRYVVDV  477
             VI HP Y LPF+ PGRLV +K + D+DFGWGVVVN+K+R   K + +  P  + Y+VDV
Sbjct  61   EVILHPPYGLPFLQPGRLVVVKDNGDQDFGWGVVVNFKKR---KKNGKAEPPQESYIVDV  117

Query  478  LLNIAEGPSVATK--TFEELPSGVRPVKEGENSRMEVVPVLTECIRAISHIRMKLPKDLN  535
            LL +A   S        +  P G RP   GE   MEVVPV    I AIS +R+KLPKDL 
Sbjct  118  LLVLALVSSPEDLDKFNDVNPEGFRPAPPGEKGEMEVVPVPLSDIEAISSVRLKLPKDLR  177

Query  536  PKEAKNGVKKSLAEIHKRFPDGIATLDPIEDMNIKDESFKKLLR  579
            P EA+  V K+L E+ +RFPDGI  LDPIEDM IKD+ FK+LLR
Sbjct  178  PAEAREAVLKALQELKRRFPDGIPLLDPIEDMKIKDDEFKELLR  221



Lambda      K        H        a         alpha
   0.321    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 795035696


Query= TCONS_00030198

Length=1105
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain...  355     6e-115
CDD:462374 pfam08148, DSHCT, DSHCT (NUC185) domain. This C termin...  208     7e-63 
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  115     5e-30 


>CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain.  Mtr4 
is the essential RNA helicase, and is an exosome-activating 
cofactor. This arch domain is carried in Mtr4 and Ski2 (the 
cytosolic homolog of Mtr4). The arch domain is required for 
proper 5.8S rRNA processing, and appears to function independently 
of canonical helicase activity.
Length=267

 Score = 355 bits (912),  Expect = 6e-115, Method: Composition-based stats.
 Identities = 144/258 (56%), Positives = 181/258 (70%), Gaps = 6/258 (2%)

Query  614  EFMLERCFYQFQNTAGVADLEKQLQEFEEKRANMTIPDEGTIREYYELRTQLDKYADDIQ  673
            E+ML+R F QFQN A + +LEK+L+E E++ A++ IPDE  I+EYY+LR QL+K  +DI+
Sbjct  1    EYMLKRSFSQFQNQASLPELEKKLKELEKELASIKIPDEEDIKEYYDLRQQLEKLNEDIR  60

Query  674  AVISHPDYSLPFMLPGRLVHIK-HKDKDFGWGVVVNYKQRKPPKNSTEEIPRDKRYVVDV  732
             VI HP Y LPF+ PGRLV +K + D+DFGWGVVVN+K+RK    + +  P  + Y+VDV
Sbjct  61   EVILHPPYGLPFLQPGRLVVVKDNGDQDFGWGVVVNFKKRK---KNGKAEPPQESYIVDV  117

Query  733  LLNIAEGPSVATKT--FEELPSGVRPVKEGENSRMEVVPVLTECIRAISHIRMKLPKDLN  790
            LL +A   S        +  P G RP   GE   MEVVPV    I AIS +R+KLPKDL 
Sbjct  118  LLVLALVSSPEDLDKFNDVNPEGFRPAPPGEKGEMEVVPVPLSDIEAISSVRLKLPKDLR  177

Query  791  PKEAKNGVKKSLAEIHKRFPDGIATLDPIEDMNIKDESFKKLLRKVEVLESRLLSNPLHN  850
            P EA+  V K+L E+ +RFPDGI  LDPIEDM IKD+ FK+LLRK+EVLESRL S+PLH 
Sbjct  178  PAEAREAVLKALQELKRRFPDGIPLLDPIEDMKIKDDEFKELLRKIEVLESRLESHPLHK  237

Query  851  SPRLPELYEQYSEKVELG  868
            SPRL ELY  Y EKVEL 
Sbjct  238  SPRLEELYALYHEKVELQ  255


>CDD:462374 pfam08148, DSHCT, DSHCT (NUC185) domain.  This C terminal domain 
is found in DOB1/SK12/helY-like DEAD box helicases.
Length=154

 Score = 208 bits (532),  Expect = 7e-63, Method: Composition-based stats.
 Identities = 82/192 (43%), Positives = 116/192 (60%), Gaps = 38/192 (20%)

Query  907   EVVQLKARVACEISTGDELMLSELLFNGFFNKLTPEQIAAVLSVFVFEEKSKETPALTRD  966
             +VV LK RVACEI + +EL+L+ELLF+G F+ L PE++AA+LS FVFEEK +E P L   
Sbjct  1     DVVTLKGRVACEIRSENELLLTELLFSGVFDDLDPEELAALLSAFVFEEKRRE-PYLPSP  59

Query  967   ELAKPLKEIQAQARIVAKVSQESKLAVNEEEYVNSFHWELMEVIYEWANGKSFADIWYVV  1026
             ELA+ L+ ++  A  +A VS+                + LMEV+Y WA G SFA+I    
Sbjct  60    ELAEALRLLEEIAHRIA-VSRF-------------LDFGLMEVVYAWARGASFAEI----  101

Query  1027  YLSALSSQSPLQKLTCLSHSGMTDVYEGSLIRVFRRLEECLRQMAQASKVMGNEELESKF  1086
                            C     +TD+ EG ++R+ RRL+E LRQ+A A+K++G+ EL  K 
Sbjct  102   ---------------C----KLTDLDEGDIVRLIRRLDELLRQIANAAKIIGDPELREKA  142

Query  1087  EEALTKVRRDIV  1098
             EEA+  ++RDIV
Sbjct  143   EEAIELIKRDIV  154


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 115 bits (289),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 41/159 (26%), Positives = 67/159 (42%), Gaps = 14/159 (9%)

Query  163  PFQQVAVASIQREESVLVSAHTSAGKTVVAEYAIAQSLKNNQ---RVIYTSPIKALSNQK  219
            P Q  A+ +I     VLV A T +GKT+       ++L       + +  +P + L+ Q 
Sbjct  2    PIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQI  61

Query  220  YREFAAEFGDVGLM----TGDVTINPTAT------CLVMTTEILRSMLYRGSEIMREVAW  269
            Y E       +GL      G  +             LV T   L  +L    ++++ +  
Sbjct  62   YEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RKLLKNLKL  120

Query  270  VIFDEIHYMRDAIRGVVWEETIILLPDKVRYVFLSATIP  308
            ++ DE H + D   G   EE +  LP K + + LSAT+P
Sbjct  121  LVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLP  159



Lambda      K        H        a         alpha
   0.317    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1407407904


Query= TCONS_00030199

Length=665
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  115     3e-30


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 115 bits (289),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 41/159 (26%), Positives = 67/159 (42%), Gaps = 14/159 (9%)

Query  163  PFQQVAVASIQREESVLVSAHTSAGKTVVAEYAIAQSLKNNQ---RVIYTSPIKALSNQK  219
            P Q  A+ +I     VLV A T +GKT+       ++L       + +  +P + L+ Q 
Sbjct  2    PIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQI  61

Query  220  YREFAAEFGDVGLM----TGDVTINPTAT------CLVMTTEILRSMLYRGSEIMREVAW  269
            Y E       +GL      G  +             LV T   L  +L    ++++ +  
Sbjct  62   YEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RKLLKNLKL  120

Query  270  VIFDEIHYMRDAIRGVVWEETIILLPDKVRYVFLSATIP  308
            ++ DE H + D   G   EE +  LP K + + LSAT+P
Sbjct  121  LVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLP  159



Lambda      K        H        a         alpha
   0.318    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0731    0.140     1.90     42.6     43.6 

Effective search space used: 843579880


Query= TCONS_00034840

Length=1082
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain...  354     5e-115
CDD:462374 pfam08148, DSHCT, DSHCT (NUC185) domain. This C termin...  225     6e-69 
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  115     5e-30 


>CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain.  Mtr4 
is the essential RNA helicase, and is an exosome-activating 
cofactor. This arch domain is carried in Mtr4 and Ski2 (the 
cytosolic homolog of Mtr4). The arch domain is required for 
proper 5.8S rRNA processing, and appears to function independently 
of canonical helicase activity.
Length=267

 Score = 354 bits (911),  Expect = 5e-115, Method: Composition-based stats.
 Identities = 144/258 (56%), Positives = 181/258 (70%), Gaps = 6/258 (2%)

Query  614  EFMLERCFYQFQNTAGVADLEKQLQEFEEKRANMTIPDEGTIREYYELRTQLDKYADDIQ  673
            E+ML+R F QFQN A + +LEK+L+E E++ A++ IPDE  I+EYY+LR QL+K  +DI+
Sbjct  1    EYMLKRSFSQFQNQASLPELEKKLKELEKELASIKIPDEEDIKEYYDLRQQLEKLNEDIR  60

Query  674  AVISHPDYSLPFMLPGRLVHIK-HKDKDFGWGVVVNYKQRKPPKNSTEEIPRDKRYVVDV  732
             VI HP Y LPF+ PGRLV +K + D+DFGWGVVVN+K+RK    + +  P  + Y+VDV
Sbjct  61   EVILHPPYGLPFLQPGRLVVVKDNGDQDFGWGVVVNFKKRK---KNGKAEPPQESYIVDV  117

Query  733  LLNIAEGPSVATKT--FEELPSGVRPVKEGENSRMEVVPVLTECIRAISHIRMKLPKDLN  790
            LL +A   S        +  P G RP   GE   MEVVPV    I AIS +R+KLPKDL 
Sbjct  118  LLVLALVSSPEDLDKFNDVNPEGFRPAPPGEKGEMEVVPVPLSDIEAISSVRLKLPKDLR  177

Query  791  PKEAKNGVKKSLAEIHKRFPDGIATLDPIEDMNIKDESFKKLLRKVEVLESRLLSNPLHN  850
            P EA+  V K+L E+ +RFPDGI  LDPIEDM IKD+ FK+LLRK+EVLESRL S+PLH 
Sbjct  178  PAEAREAVLKALQELKRRFPDGIPLLDPIEDMKIKDDEFKELLRKIEVLESRLESHPLHK  237

Query  851  SPRLPELYEQYSEKVELG  868
            SPRL ELY  Y EKVEL 
Sbjct  238  SPRLEELYALYHEKVELQ  255


>CDD:462374 pfam08148, DSHCT, DSHCT (NUC185) domain.  This C terminal domain 
is found in DOB1/SK12/helY-like DEAD box helicases.
Length=154

 Score = 225 bits (576),  Expect = 6e-69, Method: Composition-based stats.
 Identities = 82/169 (49%), Positives = 116/169 (69%), Gaps = 15/169 (9%)

Query  907   EVVQLKARVACEISTGDELMLSELLFNGFFNKLTPEQIAAVLSVFVFEEKSKETPALTRD  966
             +VV LK RVACEI + +EL+L+ELLF+G F+ L PE++AA+LS FVFEEK +E P L   
Sbjct  1     DVVTLKGRVACEIRSENELLLTELLFSGVFDDLDPEELAALLSAFVFEEKRRE-PYLPSP  59

Query  967   ELAKPLKEIQAQARIVAKVSQESKLAVNEEEYVNSFHWELMEVIYEWANGKSFADICGMT  1026
             ELA+ L+ ++  A  +A VS+                + LMEV+Y WA G SFA+IC +T
Sbjct  60    ELAEALRLLEEIAHRIA-VSRF-------------LDFGLMEVVYAWARGASFAEICKLT  105

Query  1027  DVYEGSLIRVFRRLEECLRQMAQASKVMGNEELESKFEEALTKVRRDIV  1075
             D+ EG ++R+ RRL+E LRQ+A A+K++G+ EL  K EEA+  ++RDIV
Sbjct  106   DLDEGDIVRLIRRLDELLRQIANAAKIIGDPELREKAEEAIELIKRDIV  154


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 115 bits (289),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 41/159 (26%), Positives = 67/159 (42%), Gaps = 14/159 (9%)

Query  163  PFQQVAVASIQREESVLVSAHTSAGKTVVAEYAIAQSLKNNQ---RVIYTSPIKALSNQK  219
            P Q  A+ +I     VLV A T +GKT+       ++L       + +  +P + L+ Q 
Sbjct  2    PIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQI  61

Query  220  YREFAAEFGDVGLM----TGDVTINPTAT------CLVMTTEILRSMLYRGSEIMREVAW  269
            Y E       +GL      G  +             LV T   L  +L    ++++ +  
Sbjct  62   YEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RKLLKNLKL  120

Query  270  VIFDEIHYMRDAIRGVVWEETIILLPDKVRYVFLSATIP  308
            ++ DE H + D   G   EE +  LP K + + LSAT+P
Sbjct  121  LVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLP  159



Lambda      K        H        a         alpha
   0.317    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1375294430


Query= TCONS_00030201

Length=827
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain...  351     4e-116
CDD:462374 pfam08148, DSHCT, DSHCT (NUC185) domain. This C termin...  224     2e-69 


>CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain.  Mtr4 
is the essential RNA helicase, and is an exosome-activating 
cofactor. This arch domain is carried in Mtr4 and Ski2 (the 
cytosolic homolog of Mtr4). The arch domain is required for 
proper 5.8S rRNA processing, and appears to function independently 
of canonical helicase activity.
Length=267

 Score = 351 bits (903),  Expect = 4e-116, Method: Composition-based stats.
 Identities = 144/258 (56%), Positives = 181/258 (70%), Gaps = 6/258 (2%)

Query  359  EFMLERCFYQFQNTAGVADLEKQLQEFEEKRANMTIPDEGTIREYYELRTQLDKYADDIQ  418
            E+ML+R F QFQN A + +LEK+L+E E++ A++ IPDE  I+EYY+LR QL+K  +DI+
Sbjct  1    EYMLKRSFSQFQNQASLPELEKKLKELEKELASIKIPDEEDIKEYYDLRQQLEKLNEDIR  60

Query  419  AVISHPDYSLPFMLPGRLVHIK-HKDKDFGWGVVVNYKQRKPPKNSTEEIPRDKRYVVDV  477
             VI HP Y LPF+ PGRLV +K + D+DFGWGVVVN+K+RK    + +  P  + Y+VDV
Sbjct  61   EVILHPPYGLPFLQPGRLVVVKDNGDQDFGWGVVVNFKKRK---KNGKAEPPQESYIVDV  117

Query  478  LLNIAEGPSVATKT--FEELPSGVRPVKEGENSRMEVVPVLTECIRAISHIRMKLPKDLN  535
            LL +A   S        +  P G RP   GE   MEVVPV    I AIS +R+KLPKDL 
Sbjct  118  LLVLALVSSPEDLDKFNDVNPEGFRPAPPGEKGEMEVVPVPLSDIEAISSVRLKLPKDLR  177

Query  536  PKEAKNGVKKSLAEIHKRFPDGIATLDPIEDMNIKDESFKKLLRKVEVLESRLLSNPLHN  595
            P EA+  V K+L E+ +RFPDGI  LDPIEDM IKD+ FK+LLRK+EVLESRL S+PLH 
Sbjct  178  PAEAREAVLKALQELKRRFPDGIPLLDPIEDMKIKDDEFKELLRKIEVLESRLESHPLHK  237

Query  596  SPRLPELYEQYSEKVELG  613
            SPRL ELY  Y EKVEL 
Sbjct  238  SPRLEELYALYHEKVELQ  255


>CDD:462374 pfam08148, DSHCT, DSHCT (NUC185) domain.  This C terminal domain 
is found in DOB1/SK12/helY-like DEAD box helicases.
Length=154

 Score = 224 bits (573),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 82/169 (49%), Positives = 116/169 (69%), Gaps = 15/169 (9%)

Query  652  EVVQLKARVACEISTGDELMLSELLFNGFFNKLTPEQIAAVLSVFVFEEKSKETPALTRD  711
            +VV LK RVACEI + +EL+L+ELLF+G F+ L PE++AA+LS FVFEEK +E P L   
Sbjct  1    DVVTLKGRVACEIRSENELLLTELLFSGVFDDLDPEELAALLSAFVFEEKRRE-PYLPSP  59

Query  712  ELAKPLKEIQAQARIVAKVSQESKLAVNEEEYVNSFHWELMEVIYEWANGKSFADICGMT  771
            ELA+ L+ ++  A  +A VS+                + LMEV+Y WA G SFA+IC +T
Sbjct  60   ELAEALRLLEEIAHRIA-VSRF-------------LDFGLMEVVYAWARGASFAEICKLT  105

Query  772  DVYEGSLIRVFRRLEECLRQMAQASKVMGNEELESKFEEALTKVRRDIV  820
            D+ EG ++R+ RRL+E LRQ+A A+K++G+ EL  K EEA+  ++RDIV
Sbjct  106  DLDEGDIVRLIRRLDELLRQIANAAKIIGDPELREKAEEAIELIKRDIV  154



Lambda      K        H        a         alpha
   0.319    0.136    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050796248


Query= TCONS_00030200

Length=1082
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain...  354     5e-115
CDD:462374 pfam08148, DSHCT, DSHCT (NUC185) domain. This C termin...  225     6e-69 
CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  115     5e-30 


>CDD:463813 pfam13234, rRNA_proc-arch, rRNA-processing arch domain.  Mtr4 
is the essential RNA helicase, and is an exosome-activating 
cofactor. This arch domain is carried in Mtr4 and Ski2 (the 
cytosolic homolog of Mtr4). The arch domain is required for 
proper 5.8S rRNA processing, and appears to function independently 
of canonical helicase activity.
Length=267

 Score = 354 bits (911),  Expect = 5e-115, Method: Composition-based stats.
 Identities = 144/258 (56%), Positives = 181/258 (70%), Gaps = 6/258 (2%)

Query  614  EFMLERCFYQFQNTAGVADLEKQLQEFEEKRANMTIPDEGTIREYYELRTQLDKYADDIQ  673
            E+ML+R F QFQN A + +LEK+L+E E++ A++ IPDE  I+EYY+LR QL+K  +DI+
Sbjct  1    EYMLKRSFSQFQNQASLPELEKKLKELEKELASIKIPDEEDIKEYYDLRQQLEKLNEDIR  60

Query  674  AVISHPDYSLPFMLPGRLVHIK-HKDKDFGWGVVVNYKQRKPPKNSTEEIPRDKRYVVDV  732
             VI HP Y LPF+ PGRLV +K + D+DFGWGVVVN+K+RK    + +  P  + Y+VDV
Sbjct  61   EVILHPPYGLPFLQPGRLVVVKDNGDQDFGWGVVVNFKKRK---KNGKAEPPQESYIVDV  117

Query  733  LLNIAEGPSVATKT--FEELPSGVRPVKEGENSRMEVVPVLTECIRAISHIRMKLPKDLN  790
            LL +A   S        +  P G RP   GE   MEVVPV    I AIS +R+KLPKDL 
Sbjct  118  LLVLALVSSPEDLDKFNDVNPEGFRPAPPGEKGEMEVVPVPLSDIEAISSVRLKLPKDLR  177

Query  791  PKEAKNGVKKSLAEIHKRFPDGIATLDPIEDMNIKDESFKKLLRKVEVLESRLLSNPLHN  850
            P EA+  V K+L E+ +RFPDGI  LDPIEDM IKD+ FK+LLRK+EVLESRL S+PLH 
Sbjct  178  PAEAREAVLKALQELKRRFPDGIPLLDPIEDMKIKDDEFKELLRKIEVLESRLESHPLHK  237

Query  851  SPRLPELYEQYSEKVELG  868
            SPRL ELY  Y EKVEL 
Sbjct  238  SPRLEELYALYHEKVELQ  255


>CDD:462374 pfam08148, DSHCT, DSHCT (NUC185) domain.  This C terminal domain 
is found in DOB1/SK12/helY-like DEAD box helicases.
Length=154

 Score = 225 bits (576),  Expect = 6e-69, Method: Composition-based stats.
 Identities = 82/169 (49%), Positives = 116/169 (69%), Gaps = 15/169 (9%)

Query  907   EVVQLKARVACEISTGDELMLSELLFNGFFNKLTPEQIAAVLSVFVFEEKSKETPALTRD  966
             +VV LK RVACEI + +EL+L+ELLF+G F+ L PE++AA+LS FVFEEK +E P L   
Sbjct  1     DVVTLKGRVACEIRSENELLLTELLFSGVFDDLDPEELAALLSAFVFEEKRRE-PYLPSP  59

Query  967   ELAKPLKEIQAQARIVAKVSQESKLAVNEEEYVNSFHWELMEVIYEWANGKSFADICGMT  1026
             ELA+ L+ ++  A  +A VS+                + LMEV+Y WA G SFA+IC +T
Sbjct  60    ELAEALRLLEEIAHRIA-VSRF-------------LDFGLMEVVYAWARGASFAEICKLT  105

Query  1027  DVYEGSLIRVFRRLEECLRQMAQASKVMGNEELESKFEEALTKVRRDIV  1075
             D+ EG ++R+ RRL+E LRQ+A A+K++G+ EL  K EEA+  ++RDIV
Sbjct  106   DLDEGDIVRLIRRLDELLRQIANAAKIIGDPELREKAEEAIELIKRDIV  154


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 115 bits (289),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 41/159 (26%), Positives = 67/159 (42%), Gaps = 14/159 (9%)

Query  163  PFQQVAVASIQREESVLVSAHTSAGKTVVAEYAIAQSLKNNQ---RVIYTSPIKALSNQK  219
            P Q  A+ +I     VLV A T +GKT+       ++L       + +  +P + L+ Q 
Sbjct  2    PIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEALDKLDNGPQALVLAPTRELAEQI  61

Query  220  YREFAAEFGDVGLM----TGDVTINPTAT------CLVMTTEILRSMLYRGSEIMREVAW  269
            Y E       +GL      G  +             LV T   L  +L    ++++ +  
Sbjct  62   YEELKKLGKGLGLKVASLLGGDSRKEQLEKLKGPDILVGTPGRLLDLLQE-RKLLKNLKL  120

Query  270  VIFDEIHYMRDAIRGVVWEETIILLPDKVRYVFLSATIP  308
            ++ DE H + D   G   EE +  LP K + + LSAT+P
Sbjct  121  LVLDEAHRLLDMGFGPDLEEILRRLPKKRQILLLSATLP  159



Lambda      K        H        a         alpha
   0.317    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1375294430


Query= TCONS_00030202

Length=355


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00034841

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462518 pfam08559, Cut8, Cut8, nuclear proteasome tether prote...  284     1e-97


>CDD:462518 pfam08559, Cut8, Cut8, nuclear proteasome tether protein.  In 
Schizosaccharomyces pombe, Cut8 is a nuclear envelope protein 
that physically interacts with and tethers 26S proteasome 
in the nucleus resulting in the nuclear accumulation of proteasome. 
Cut8 comprises three functional domains. An N-terminal 
lysine-rich segment which binds to the proteasome when ubiquitinated, 
a central dimerization domain and a C-terminal 
nine-helix, Structure 3q5w, bundle which shows structural similarity 
to 14-3-3 phosphoprotein-binding domains. The helical 
bundle is necessary for liposome and cholesterol binding. 
Cut8 is a proteasome substrate and the N-terminal segment 
is polyubiquitinated and functions as a degron tag. Ubiquitination 
of the amino N-terminal segment is essential for the 
function of Cut8. Lysine residues in the N-terminal segment 
of Cut8 are required for physical interaction with proteasome. 
In fission yeast the function of Cut8 has been demonstrated 
to be regulated by ubiquitin-conjugating Rhp6/Ubc2/Rad6 and 
ligating enzymes Ubr1. Cut8 homologs have been identified 
in Drosophila melanogaster, Anopheles gambiae and Dictyostelium 
discoideum.
Length=203

 Score = 284 bits (730),  Expect = 1e-97, Method: Composition-based stats.
 Identities = 110/202 (54%), Positives = 139/202 (69%), Gaps = 3/202 (1%)

Query  72   KRSRPNVSGRPLSLPRLLETLDTDALRGILRSMCERHPALADEVIHTSPRPSVSSALQVL  131
            KR R         LPRLLETLD + LR +L+S+ ERHP L  EV+  +PRP + S LQVL
Sbjct  3    KRKRLL-LSDTDPLPRLLETLDKEQLRSLLQSLVERHPELQQEVVSKAPRPDIQSLLQVL  61

Query  132  RNYQSTLQNSFPLGGNPESDYAYNRVRQPLGNLLDALSDFTPHFLPPHETQASVSLSYLD  191
               Q  +  S P  G+   DYAYNRV+  L   LDALSDFT +FLPP+ETQ S SL +LD
Sbjct  62   SEKQENIFKSLPYSGDSTDDYAYNRVKPHLLEFLDALSDFTLNFLPPNETQWSTSLKFLD  121

Query  192  GATDIIHALPRWHSPQNNIERDSAYDEICKAWILVIREAAKRGGGI--QLQYGGWDQKLA  249
            GAT+I+H LP W +  +N  +D  Y+++  AW LVI+EAAKRGGG+  QL  GGWDQKLA
Sbjct  122  GATNIVHRLPNWDNQSHNYYKDKCYEQLSNAWALVIKEAAKRGGGLLGQLHLGGWDQKLA  181

Query  250  KHNQNAGGRLQAAVNELGNSLG  271
            KHN+++GGRLQ+A+N L + LG
Sbjct  182  KHNEDSGGRLQSALNLLKSLLG  203



Lambda      K        H        a         alpha
   0.315    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00030203

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460665 pfam02729, OTCace_N, Aspartate/ornithine carbamoyltran...  203     1e-65
CDD:425511 pfam00185, OTCace, Aspartate/ornithine carbamoyltransf...  187     3e-59


>CDD:460665 pfam02729, OTCace_N, Aspartate/ornithine carbamoyltransferase, 
carbamoyl-P binding domain.  
Length=140

 Score = 203 bits (518),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 66/144 (46%), Positives = 88/144 (61%), Gaps = 4/144 (3%)

Query  47   HFLSIADLTPTEFATLVRNASSYKRSIKSGSVPQNLLGALNGKTVAMMFSKRSTRTRIST  106
            HFLS+ DL+  E   L+  A+  K + K G         L GKTVA++F + STRTR+S 
Sbjct  1    HFLSLEDLSREEIEALLDLAAELKEARKRGKKLP----LLKGKTVALLFEEPSTRTRVSF  56

Query  107  EGAVVRMGGHPMFLGKDDIQLGVNESLYDTAVVVSSMVSCIVARVGQHAEVADLAKHSTV  166
            E A  R+GGH ++L   DIQL   ESL DTA V+S  V  IV R   H ++ +LA++++V
Sbjct  57   EVAAKRLGGHVIYLSSSDIQLSSGESLADTARVLSRYVDAIVIRHFGHEDLEELAEYASV  116

Query  167  PVINALCDSFHPLQAIADFQTMHE  190
            PVINA  D  HP QA+AD  T+ E
Sbjct  117  PVINAGGDHEHPTQALADLLTIRE  140


>CDD:425511 pfam00185, OTCace, Aspartate/ornithine carbamoyltransferase, 
Asp/Orn binding domain.  
Length=154

 Score = 187 bits (476),  Expect = 3e-59, Method: Composition-based stats.
 Identities = 78/151 (52%), Positives = 99/151 (66%), Gaps = 6/151 (4%)

Query  208  KIAWVGDA-NNVLFDMAIAAAKMGIDLAVATPKGYEIPAHMLEIIEKAGEGVSSPGKLIQ  266
            KIA+VGD  NNV   + IAAAK+G+D+ +ATPKGY     +L+  +K  E   S G +  
Sbjct  1    KIAYVGDGHNNVAHSLIIAAAKLGMDVRLATPKGYPPDPEVLDKAKKIAE--KSGGSIEI  58

Query  267  TNVPEEAVKGADVLVTDTWVSMGQEAESIKRLKDFEGFQITADLAKRGGAKEGWKFMHCL  326
            T+ P EAVKGADV+ TD W SMGQE E  +RLK F+ +Q+  +L K   AK+   FMHCL
Sbjct  59   TDDPAEAVKGADVVYTDVWQSMGQEKEREERLKAFKPYQVNEELMK--LAKKDAIFMHCL  116

Query  327  PRH-PEEVNDEVFYSQRSLVFPEAENRLWAA  356
            P H  EEV D+VF   RS+VF +AENRL A 
Sbjct  117  PAHRGEEVTDDVFDGPRSVVFDQAENRLHAQ  147



Lambda      K        H        a         alpha
   0.318    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00034842

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460665 pfam02729, OTCace_N, Aspartate/ornithine carbamoyltran...  203     1e-65
CDD:425511 pfam00185, OTCace, Aspartate/ornithine carbamoyltransf...  187     3e-59


>CDD:460665 pfam02729, OTCace_N, Aspartate/ornithine carbamoyltransferase, 
carbamoyl-P binding domain.  
Length=140

 Score = 203 bits (518),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 66/144 (46%), Positives = 88/144 (61%), Gaps = 4/144 (3%)

Query  47   HFLSIADLTPTEFATLVRNASSYKRSIKSGSVPQNLLGALNGKTVAMMFSKRSTRTRIST  106
            HFLS+ DL+  E   L+  A+  K + K G         L GKTVA++F + STRTR+S 
Sbjct  1    HFLSLEDLSREEIEALLDLAAELKEARKRGKKLP----LLKGKTVALLFEEPSTRTRVSF  56

Query  107  EGAVVRMGGHPMFLGKDDIQLGVNESLYDTAVVVSSMVSCIVARVGQHAEVADLAKHSTV  166
            E A  R+GGH ++L   DIQL   ESL DTA V+S  V  IV R   H ++ +LA++++V
Sbjct  57   EVAAKRLGGHVIYLSSSDIQLSSGESLADTARVLSRYVDAIVIRHFGHEDLEELAEYASV  116

Query  167  PVINALCDSFHPLQAIADFQTMHE  190
            PVINA  D  HP QA+AD  T+ E
Sbjct  117  PVINAGGDHEHPTQALADLLTIRE  140


>CDD:425511 pfam00185, OTCace, Aspartate/ornithine carbamoyltransferase, 
Asp/Orn binding domain.  
Length=154

 Score = 187 bits (476),  Expect = 3e-59, Method: Composition-based stats.
 Identities = 78/151 (52%), Positives = 99/151 (66%), Gaps = 6/151 (4%)

Query  208  KIAWVGDA-NNVLFDMAIAAAKMGIDLAVATPKGYEIPAHMLEIIEKAGEGVSSPGKLIQ  266
            KIA+VGD  NNV   + IAAAK+G+D+ +ATPKGY     +L+  +K  E   S G +  
Sbjct  1    KIAYVGDGHNNVAHSLIIAAAKLGMDVRLATPKGYPPDPEVLDKAKKIAE--KSGGSIEI  58

Query  267  TNVPEEAVKGADVLVTDTWVSMGQEAESIKRLKDFEGFQITADLAKRGGAKEGWKFMHCL  326
            T+ P EAVKGADV+ TD W SMGQE E  +RLK F+ +Q+  +L K   AK+   FMHCL
Sbjct  59   TDDPAEAVKGADVVYTDVWQSMGQEKEREERLKAFKPYQVNEELMK--LAKKDAIFMHCL  116

Query  327  PRH-PEEVNDEVFYSQRSLVFPEAENRLWAA  356
            P H  EEV D+VF   RS+VF +AENRL A 
Sbjct  117  PAHRGEEVTDDVFDGPRSVVFDQAENRLHAQ  147



Lambda      K        H        a         alpha
   0.318    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00030204

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460665 pfam02729, OTCace_N, Aspartate/ornithine carbamoyltran...  203     1e-65
CDD:425511 pfam00185, OTCace, Aspartate/ornithine carbamoyltransf...  187     3e-59


>CDD:460665 pfam02729, OTCace_N, Aspartate/ornithine carbamoyltransferase, 
carbamoyl-P binding domain.  
Length=140

 Score = 203 bits (518),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 66/144 (46%), Positives = 88/144 (61%), Gaps = 4/144 (3%)

Query  47   HFLSIADLTPTEFATLVRNASSYKRSIKSGSVPQNLLGALNGKTVAMMFSKRSTRTRIST  106
            HFLS+ DL+  E   L+  A+  K + K G         L GKTVA++F + STRTR+S 
Sbjct  1    HFLSLEDLSREEIEALLDLAAELKEARKRGKKLP----LLKGKTVALLFEEPSTRTRVSF  56

Query  107  EGAVVRMGGHPMFLGKDDIQLGVNESLYDTAVVVSSMVSCIVARVGQHAEVADLAKHSTV  166
            E A  R+GGH ++L   DIQL   ESL DTA V+S  V  IV R   H ++ +LA++++V
Sbjct  57   EVAAKRLGGHVIYLSSSDIQLSSGESLADTARVLSRYVDAIVIRHFGHEDLEELAEYASV  116

Query  167  PVINALCDSFHPLQAIADFQTMHE  190
            PVINA  D  HP QA+AD  T+ E
Sbjct  117  PVINAGGDHEHPTQALADLLTIRE  140


>CDD:425511 pfam00185, OTCace, Aspartate/ornithine carbamoyltransferase, 
Asp/Orn binding domain.  
Length=154

 Score = 187 bits (476),  Expect = 3e-59, Method: Composition-based stats.
 Identities = 78/151 (52%), Positives = 99/151 (66%), Gaps = 6/151 (4%)

Query  208  KIAWVGDA-NNVLFDMAIAAAKMGIDLAVATPKGYEIPAHMLEIIEKAGEGVSSPGKLIQ  266
            KIA+VGD  NNV   + IAAAK+G+D+ +ATPKGY     +L+  +K  E   S G +  
Sbjct  1    KIAYVGDGHNNVAHSLIIAAAKLGMDVRLATPKGYPPDPEVLDKAKKIAE--KSGGSIEI  58

Query  267  TNVPEEAVKGADVLVTDTWVSMGQEAESIKRLKDFEGFQITADLAKRGGAKEGWKFMHCL  326
            T+ P EAVKGADV+ TD W SMGQE E  +RLK F+ +Q+  +L K   AK+   FMHCL
Sbjct  59   TDDPAEAVKGADVVYTDVWQSMGQEKEREERLKAFKPYQVNEELMK--LAKKDAIFMHCL  116

Query  327  PRH-PEEVNDEVFYSQRSLVFPEAENRLWAA  356
            P H  EEV D+VF   RS+VF +AENRL A 
Sbjct  117  PAHRGEEVTDDVFDGPRSVVFDQAENRLHAQ  147



Lambda      K        H        a         alpha
   0.318    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00030206

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460665 pfam02729, OTCace_N, Aspartate/ornithine carbamoyltran...  203     1e-65
CDD:425511 pfam00185, OTCace, Aspartate/ornithine carbamoyltransf...  187     3e-59


>CDD:460665 pfam02729, OTCace_N, Aspartate/ornithine carbamoyltransferase, 
carbamoyl-P binding domain.  
Length=140

 Score = 203 bits (518),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 66/144 (46%), Positives = 88/144 (61%), Gaps = 4/144 (3%)

Query  47   HFLSIADLTPTEFATLVRNASSYKRSIKSGSVPQNLLGALNGKTVAMMFSKRSTRTRIST  106
            HFLS+ DL+  E   L+  A+  K + K G         L GKTVA++F + STRTR+S 
Sbjct  1    HFLSLEDLSREEIEALLDLAAELKEARKRGKKLP----LLKGKTVALLFEEPSTRTRVSF  56

Query  107  EGAVVRMGGHPMFLGKDDIQLGVNESLYDTAVVVSSMVSCIVARVGQHAEVADLAKHSTV  166
            E A  R+GGH ++L   DIQL   ESL DTA V+S  V  IV R   H ++ +LA++++V
Sbjct  57   EVAAKRLGGHVIYLSSSDIQLSSGESLADTARVLSRYVDAIVIRHFGHEDLEELAEYASV  116

Query  167  PVINALCDSFHPLQAIADFQTMHE  190
            PVINA  D  HP QA+AD  T+ E
Sbjct  117  PVINAGGDHEHPTQALADLLTIRE  140


>CDD:425511 pfam00185, OTCace, Aspartate/ornithine carbamoyltransferase, 
Asp/Orn binding domain.  
Length=154

 Score = 187 bits (476),  Expect = 3e-59, Method: Composition-based stats.
 Identities = 78/151 (52%), Positives = 99/151 (66%), Gaps = 6/151 (4%)

Query  208  KIAWVGDA-NNVLFDMAIAAAKMGIDLAVATPKGYEIPAHMLEIIEKAGEGVSSPGKLIQ  266
            KIA+VGD  NNV   + IAAAK+G+D+ +ATPKGY     +L+  +K  E   S G +  
Sbjct  1    KIAYVGDGHNNVAHSLIIAAAKLGMDVRLATPKGYPPDPEVLDKAKKIAE--KSGGSIEI  58

Query  267  TNVPEEAVKGADVLVTDTWVSMGQEAESIKRLKDFEGFQITADLAKRGGAKEGWKFMHCL  326
            T+ P EAVKGADV+ TD W SMGQE E  +RLK F+ +Q+  +L K   AK+   FMHCL
Sbjct  59   TDDPAEAVKGADVVYTDVWQSMGQEKEREERLKAFKPYQVNEELMK--LAKKDAIFMHCL  116

Query  327  PRH-PEEVNDEVFYSQRSLVFPEAENRLWAA  356
            P H  EEV D+VF   RS+VF +AENRL A 
Sbjct  117  PAHRGEEVTDDVFDGPRSVVFDQAENRLHAQ  147



Lambda      K        H        a         alpha
   0.318    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00030205

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460665 pfam02729, OTCace_N, Aspartate/ornithine carbamoyltran...  203     1e-65
CDD:425511 pfam00185, OTCace, Aspartate/ornithine carbamoyltransf...  187     3e-59


>CDD:460665 pfam02729, OTCace_N, Aspartate/ornithine carbamoyltransferase, 
carbamoyl-P binding domain.  
Length=140

 Score = 203 bits (518),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 66/144 (46%), Positives = 88/144 (61%), Gaps = 4/144 (3%)

Query  47   HFLSIADLTPTEFATLVRNASSYKRSIKSGSVPQNLLGALNGKTVAMMFSKRSTRTRIST  106
            HFLS+ DL+  E   L+  A+  K + K G         L GKTVA++F + STRTR+S 
Sbjct  1    HFLSLEDLSREEIEALLDLAAELKEARKRGKKLP----LLKGKTVALLFEEPSTRTRVSF  56

Query  107  EGAVVRMGGHPMFLGKDDIQLGVNESLYDTAVVVSSMVSCIVARVGQHAEVADLAKHSTV  166
            E A  R+GGH ++L   DIQL   ESL DTA V+S  V  IV R   H ++ +LA++++V
Sbjct  57   EVAAKRLGGHVIYLSSSDIQLSSGESLADTARVLSRYVDAIVIRHFGHEDLEELAEYASV  116

Query  167  PVINALCDSFHPLQAIADFQTMHE  190
            PVINA  D  HP QA+AD  T+ E
Sbjct  117  PVINAGGDHEHPTQALADLLTIRE  140


>CDD:425511 pfam00185, OTCace, Aspartate/ornithine carbamoyltransferase, 
Asp/Orn binding domain.  
Length=154

 Score = 187 bits (476),  Expect = 3e-59, Method: Composition-based stats.
 Identities = 78/151 (52%), Positives = 99/151 (66%), Gaps = 6/151 (4%)

Query  208  KIAWVGDA-NNVLFDMAIAAAKMGIDLAVATPKGYEIPAHMLEIIEKAGEGVSSPGKLIQ  266
            KIA+VGD  NNV   + IAAAK+G+D+ +ATPKGY     +L+  +K  E   S G +  
Sbjct  1    KIAYVGDGHNNVAHSLIIAAAKLGMDVRLATPKGYPPDPEVLDKAKKIAE--KSGGSIEI  58

Query  267  TNVPEEAVKGADVLVTDTWVSMGQEAESIKRLKDFEGFQITADLAKRGGAKEGWKFMHCL  326
            T+ P EAVKGADV+ TD W SMGQE E  +RLK F+ +Q+  +L K   AK+   FMHCL
Sbjct  59   TDDPAEAVKGADVVYTDVWQSMGQEKEREERLKAFKPYQVNEELMK--LAKKDAIFMHCL  116

Query  327  PRH-PEEVNDEVFYSQRSLVFPEAENRLWAA  356
            P H  EEV D+VF   RS+VF +AENRL A 
Sbjct  117  PAHRGEEVTDDVFDGPRSVVFDQAENRLHAQ  147



Lambda      K        H        a         alpha
   0.318    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00030208

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426468 pfam01842, ACT, ACT domain. This family of domains gen...  55.4    4e-11


>CDD:426468 pfam01842, ACT, ACT domain.  This family of domains generally 
have a regulatory role. ACT domains are linked to a wide range 
of metabolic enzymes that are regulated by amino acid concentration. 
Pairs of ACT domains bind specifically to a particular 
amino acid leading to regulation of the linked enzyme. 
The ACT domain is found in: D-3-phosphoglycerate dehydrogenase 
EC:1.1.1.95, which is inhibited by serine. Aspartokinase 
EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase 
small regulatory subunit, which is inhibited by valine. 
Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated 
by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. 
formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated 
by methionine and inhibited by glycine. GTP pyrophosphokinase 
EC:2.7.6.5.
Length=66

 Score = 55.4 bits (134),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (2%)

Query  93   HILNCLVQNEPGVLSRVSGILAARGFNIDSLVVCNTEVEDLSRMTIVLQGQDGVVEQARR  152
             +L  LV + PG+L+RV G LA RG NI S+    +E +    + +V+   +  +E+   
Sbjct  1    TVLEVLVPDRPGLLARVLGALADRGINITSIEQGTSE-DKGGIVFVVIVVDEEDLEEVLE  59

Query  153  QLDDL  157
             L  L
Sbjct  60   ALKKL  64



Lambda      K        H        a         alpha
   0.317    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00030207

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426468 pfam01842, ACT, ACT domain. This family of domains gen...  55.4    4e-11


>CDD:426468 pfam01842, ACT, ACT domain.  This family of domains generally 
have a regulatory role. ACT domains are linked to a wide range 
of metabolic enzymes that are regulated by amino acid concentration. 
Pairs of ACT domains bind specifically to a particular 
amino acid leading to regulation of the linked enzyme. 
The ACT domain is found in: D-3-phosphoglycerate dehydrogenase 
EC:1.1.1.95, which is inhibited by serine. Aspartokinase 
EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase 
small regulatory subunit, which is inhibited by valine. 
Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated 
by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. 
formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated 
by methionine and inhibited by glycine. GTP pyrophosphokinase 
EC:2.7.6.5.
Length=66

 Score = 55.4 bits (134),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (2%)

Query  93   HILNCLVQNEPGVLSRVSGILAARGFNIDSLVVCNTEVEDLSRMTIVLQGQDGVVEQARR  152
             +L  LV + PG+L+RV G LA RG NI S+    +E +    + +V+   +  +E+   
Sbjct  1    TVLEVLVPDRPGLLARVLGALADRGINITSIEQGTSE-DKGGIVFVVIVVDEEDLEEVLE  59

Query  153  QLDDL  157
             L  L
Sbjct  60   ALKKL  64



Lambda      K        H        a         alpha
   0.317    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00030210

Length=405


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00030209

Length=484


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595027938


Query= TCONS_00034843

Length=598


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00034844

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426468 pfam01842, ACT, ACT domain. This family of domains gen...  55.4    4e-11


>CDD:426468 pfam01842, ACT, ACT domain.  This family of domains generally 
have a regulatory role. ACT domains are linked to a wide range 
of metabolic enzymes that are regulated by amino acid concentration. 
Pairs of ACT domains bind specifically to a particular 
amino acid leading to regulation of the linked enzyme. 
The ACT domain is found in: D-3-phosphoglycerate dehydrogenase 
EC:1.1.1.95, which is inhibited by serine. Aspartokinase 
EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase 
small regulatory subunit, which is inhibited by valine. 
Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated 
by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. 
formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated 
by methionine and inhibited by glycine. GTP pyrophosphokinase 
EC:2.7.6.5.
Length=66

 Score = 55.4 bits (134),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (2%)

Query  93   HILNCLVQNEPGVLSRVSGILAARGFNIDSLVVCNTEVEDLSRMTIVLQGQDGVVEQARR  152
             +L  LV + PG+L+RV G LA RG NI S+    +E +    + +V+   +  +E+   
Sbjct  1    TVLEVLVPDRPGLLARVLGALADRGINITSIEQGTSE-DKGGIVFVVIVVDEEDLEEVLE  59

Query  153  QLDDL  157
             L  L
Sbjct  60   ALKKL  64



Lambda      K        H        a         alpha
   0.317    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00030211

Length=767


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 979317296


Query= TCONS_00030212

Length=781


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 999689424


Query= TCONS_00030213

Length=239


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0768    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00030214

Length=532


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 667703106


Query= TCONS_00030215

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  66.5    3e-14


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 66.5 bits (163),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 25/106 (24%), Positives = 46/106 (43%), Gaps = 15/106 (14%)

Query  137  IVYVPYRIIAEQLATALTKVSDGSIRAVAYHAGLSPEDRNRVQTEWTASRPLAADEGPHP  196
            +++   +   + L   L    +G I+    H  LS E+R  +  ++   +          
Sbjct  19   LIFSQTK---KTLEAELLLEKEG-IKVARLHGDLSQEEREEILEDFRKGK----------  64

Query  197  SFYIIVATNAFGMGIDNPHVRFVVHWTPPRSFEGLVQESGRAGRDG  242
               ++VAT+    G+D P V  V+++  P +    +Q  GRAGR G
Sbjct  65   -IDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 481536020


Query= TCONS_00030217

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  66.5    3e-14


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 66.5 bits (163),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 25/106 (24%), Positives = 46/106 (43%), Gaps = 15/106 (14%)

Query  137  IVYVPYRIIAEQLATALTKVSDGSIRAVAYHAGLSPEDRNRVQTEWTASRPLAADEGPHP  196
            +++   +   + L   L    +G I+    H  LS E+R  +  ++   +          
Sbjct  19   LIFSQTK---KTLEAELLLEKEG-IKVARLHGDLSQEEREEILEDFRKGK----------  64

Query  197  SFYIIVATNAFGMGIDNPHVRFVVHWTPPRSFEGLVQESGRAGRDG  242
               ++VAT+    G+D P V  V+++  P +    +Q  GRAGR G
Sbjct  65   -IDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 481536020


Query= TCONS_00030216

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  66.5    3e-14


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 66.5 bits (163),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 25/106 (24%), Positives = 46/106 (43%), Gaps = 15/106 (14%)

Query  137  IVYVPYRIIAEQLATALTKVSDGSIRAVAYHAGLSPEDRNRVQTEWTASRPLAADEGPHP  196
            +++   +   + L   L    +G I+    H  LS E+R  +  ++   +          
Sbjct  19   LIFSQTK---KTLEAELLLEKEG-IKVARLHGDLSQEEREEILEDFRKGK----------  64

Query  197  SFYIIVATNAFGMGIDNPHVRFVVHWTPPRSFEGLVQESGRAGRDG  242
               ++VAT+    G+D P V  V+++  P +    +Q  GRAGR G
Sbjct  65   -IDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 481536020


Query= TCONS_00030219

Length=313


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00030220

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  66.5    3e-14


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 66.5 bits (163),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 25/106 (24%), Positives = 46/106 (43%), Gaps = 15/106 (14%)

Query  137  IVYVPYRIIAEQLATALTKVSDGSIRAVAYHAGLSPEDRNRVQTEWTASRPLAADEGPHP  196
            +++   +   + L   L    +G I+    H  LS E+R  +  ++   +          
Sbjct  19   LIFSQTK---KTLEAELLLEKEG-IKVARLHGDLSQEEREEILEDFRKGK----------  64

Query  197  SFYIIVATNAFGMGIDNPHVRFVVHWTPPRSFEGLVQESGRAGRDG  242
               ++VAT+    G+D P V  V+++  P +    +Q  GRAGR G
Sbjct  65   -IDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 481536020


Query= TCONS_00030218

Length=313


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00030221

Length=503


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 623795192


Query= TCONS_00030222

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  66.5    3e-14


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 66.5 bits (163),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 25/106 (24%), Positives = 46/106 (43%), Gaps = 15/106 (14%)

Query  137  IVYVPYRIIAEQLATALTKVSDGSIRAVAYHAGLSPEDRNRVQTEWTASRPLAADEGPHP  196
            +++   +   + L   L    +G I+    H  LS E+R  +  ++   +          
Sbjct  19   LIFSQTK---KTLEAELLLEKEG-IKVARLHGDLSQEEREEILEDFRKGK----------  64

Query  197  SFYIIVATNAFGMGIDNPHVRFVVHWTPPRSFEGLVQESGRAGRDG  242
               ++VAT+    G+D P V  V+++  P +    +Q  GRAGR G
Sbjct  65   -IDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.320    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 481536020


Query= TCONS_00034845

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00030223

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433447 pfam13741, MRP-S25, Mitochondrial ribosomal protein S2...  301     9e-105


>CDD:433447 pfam13741, MRP-S25, Mitochondrial ribosomal protein S25.  This 
is the family of fungal 37S mitochondrial ribosomal S25 proteins.
Length=221

 Score = 301 bits (772),  Expect = 9e-105, Method: Composition-based stats.
 Identities = 119/221 (54%), Positives = 150/221 (68%), Gaps = 2/221 (1%)

Query  8    ALRVRQTALRQHAAGKIRAPPKWLDVVADIPPAQVLVRNQAP-QHQLVRQRVKTLPGTSK  66
            A+ V +       +G ++  P W DVVA IPP+ +L R   P      RQR KTLPG S 
Sbjct  1    AVNVLERTSAYLKSGLLKKKPAWYDVVASIPPSTLLTRQPPPRSDPSTRQRTKTLPGKSN  60

Query  67   PQVVFEV-QEKRIKPKKASRMFLPTEIKYEEDQLRQEFFRDHPWELARPRVLVESTGKDS  125
             Q +++    K  + KK + +F P ++KY EDQLR++FFRDHPWELARP++LVE++GKD 
Sbjct  61   NQGLYKTRTNKSDRKKKNNPLFRPPKLKYLEDQLRKQFFRDHPWELARPKILVENSGKDH  120

Query  126  EHYDWSRLQQPGKRLDGESVVQRQLWLLNNVPDMTKSAAYDIARCEFYRLRLQEDIERRV  185
            +  DWSRL+Q GK LDGESVVQR L+LL NVPD++ S AYD AR EFYRLR+QE+IE RV
Sbjct  121  KKCDWSRLRQLGKPLDGESVVQRTLYLLKNVPDLSLSEAYDKARFEFYRLRMQEEIESRV  180

Query  186  AAEEAEATGATFGPSLLEVGMELENQEYERWKAWAKMEAQL  226
            A EEAE  GA FGPS LE G E E +  + WK  A+ E QL
Sbjct  181  AQEEAEMYGAVFGPSALERGFEKEQKVIDDWKKKAEEETQL  221



Lambda      K        H        a         alpha
   0.317    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00030224

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433447 pfam13741, MRP-S25, Mitochondrial ribosomal protein S2...  301     9e-105


>CDD:433447 pfam13741, MRP-S25, Mitochondrial ribosomal protein S25.  This 
is the family of fungal 37S mitochondrial ribosomal S25 proteins.
Length=221

 Score = 301 bits (772),  Expect = 9e-105, Method: Composition-based stats.
 Identities = 119/221 (54%), Positives = 150/221 (68%), Gaps = 2/221 (1%)

Query  8    ALRVRQTALRQHAAGKIRAPPKWLDVVADIPPAQVLVRNQAP-QHQLVRQRVKTLPGTSK  66
            A+ V +       +G ++  P W DVVA IPP+ +L R   P      RQR KTLPG S 
Sbjct  1    AVNVLERTSAYLKSGLLKKKPAWYDVVASIPPSTLLTRQPPPRSDPSTRQRTKTLPGKSN  60

Query  67   PQVVFEV-QEKRIKPKKASRMFLPTEIKYEEDQLRQEFFRDHPWELARPRVLVESTGKDS  125
             Q +++    K  + KK + +F P ++KY EDQLR++FFRDHPWELARP++LVE++GKD 
Sbjct  61   NQGLYKTRTNKSDRKKKNNPLFRPPKLKYLEDQLRKQFFRDHPWELARPKILVENSGKDH  120

Query  126  EHYDWSRLQQPGKRLDGESVVQRQLWLLNNVPDMTKSAAYDIARCEFYRLRLQEDIERRV  185
            +  DWSRL+Q GK LDGESVVQR L+LL NVPD++ S AYD AR EFYRLR+QE+IE RV
Sbjct  121  KKCDWSRLRQLGKPLDGESVVQRTLYLLKNVPDLSLSEAYDKARFEFYRLRMQEEIESRV  180

Query  186  AAEEAEATGATFGPSLLEVGMELENQEYERWKAWAKMEAQL  226
            A EEAE  GA FGPS LE G E E +  + WK  A+ E QL
Sbjct  181  AQEEAEMYGAVFGPSALERGFEKEQKVIDDWKKKAEEETQL  221



Lambda      K        H        a         alpha
   0.317    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00030225

Length=334


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00030226

Length=543


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684357832


Query= TCONS_00030227

Length=812


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1044799136


Query= TCONS_00034846

Length=528


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 661646842


Query= TCONS_00034847

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433447 pfam13741, MRP-S25, Mitochondrial ribosomal protein S2...  301     9e-105


>CDD:433447 pfam13741, MRP-S25, Mitochondrial ribosomal protein S25.  This 
is the family of fungal 37S mitochondrial ribosomal S25 proteins.
Length=221

 Score = 301 bits (772),  Expect = 9e-105, Method: Composition-based stats.
 Identities = 119/221 (54%), Positives = 150/221 (68%), Gaps = 2/221 (1%)

Query  8    ALRVRQTALRQHAAGKIRAPPKWLDVVADIPPAQVLVRNQAP-QHQLVRQRVKTLPGTSK  66
            A+ V +       +G ++  P W DVVA IPP+ +L R   P      RQR KTLPG S 
Sbjct  1    AVNVLERTSAYLKSGLLKKKPAWYDVVASIPPSTLLTRQPPPRSDPSTRQRTKTLPGKSN  60

Query  67   PQVVFEV-QEKRIKPKKASRMFLPTEIKYEEDQLRQEFFRDHPWELARPRVLVESTGKDS  125
             Q +++    K  + KK + +F P ++KY EDQLR++FFRDHPWELARP++LVE++GKD 
Sbjct  61   NQGLYKTRTNKSDRKKKNNPLFRPPKLKYLEDQLRKQFFRDHPWELARPKILVENSGKDH  120

Query  126  EHYDWSRLQQPGKRLDGESVVQRQLWLLNNVPDMTKSAAYDIARCEFYRLRLQEDIERRV  185
            +  DWSRL+Q GK LDGESVVQR L+LL NVPD++ S AYD AR EFYRLR+QE+IE RV
Sbjct  121  KKCDWSRLRQLGKPLDGESVVQRTLYLLKNVPDLSLSEAYDKARFEFYRLRMQEEIESRV  180

Query  186  AAEEAEATGATFGPSLLEVGMELENQEYERWKAWAKMEAQL  226
            A EEAE  GA FGPS LE G E E +  + WK  A+ E QL
Sbjct  181  AQEEAEMYGAVFGPSALERGFEKEQKVIDDWKKKAEEETQL  221



Lambda      K        H        a         alpha
   0.317    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00030228

Length=987
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431280 pfam10428, SOG2, RAM signalling pathway protein. SOG2 ...  473     2e-158


>CDD:431280 pfam10428, SOG2, RAM signalling pathway protein.  SOG2 proteins 
in Saccharomyces cerevisiae are involved in cell separation 
and cytokinesis.
Length=476

 Score = 473 bits (1219),  Expect = 2e-158, Method: Composition-based stats.
 Identities = 205/487 (42%), Positives = 271/487 (56%), Gaps = 65/487 (13%)

Query  452  FVNRMSSLPEHKGEREARDPVI---ESAKGILFALFQVQSHVSAVINVIKRDDSRRNSLE  508
            +  R+SSLPE   E+    P++   E+A+G+LFAL Q+   +  +IN IK +  R +SLE
Sbjct  1    YFRRLSSLPESTIEKAVPVPLLELVEAARGLLFALSQIHQAIRQLINFIKDERVR-SSLE  59

Query  509  IVFYNASTHVDRLNEALGIAESSRQDDQDVLKLTNEAVKRECETCIVAYSHVGTQLRNSL  568
             V YNAS+HVD L EAL   +S      +       AVKR CETC+ A+ HV TQLR +L
Sbjct  60   RVLYNASSHVDNLIEALERFDSMDSRRGEPSPSVCRAVKRACETCVSAFKHVVTQLRLNL  119

Query  569  EKIVANGDSRYVRSLMLMIHGSIIELRNACMSLGVPLHSEK------RLSAGKTPVTAIT  622
            +  VANGD RY+R+L+LM++GS+ ELRNA  SLG  L + +      R    K P  +IT
Sbjct  120  KAFVANGDVRYIRTLLLMLYGSMAELRNAWASLGPLLEAVRPPSPKKRAGRTKQPSPSIT  179

Query  623  K------EPALSDRFCGPTVTPSRGDRPMSVRRY-----RSDTTIQHPRITTNGPLPTTS  671
                       S R    +VTP+R  R            RSDTTI HP    + P P  +
Sbjct  180  SGGSPSSPAESSTRPSSSSVTPTRRRRHAGSFSSKLPPLRSDTTIPHPGGNLSSPAPNGA  239

Query  672  NYQSTVS---------------------------SPGFASTPYSLGTRSRSSSKSN-LIN  703
               +                              S   + +  +  +RSRSSS+SN L++
Sbjct  240  QTPTPPRSATSPGVPSSAPTLGTGSTGAISRSNHSTSGSQSSLTSSSRSRSSSRSNTLLS  299

Query  704  SSVPSSLAT---PRSGETFPPIPTSVVPRINPLTGLDEIEEERIFEKIFHQLSAAYTAAL  760
            +S PSSLAT   P SGE+F   PTS   RINPLTGLDE         +F  L++A  AAL
Sbjct  300  TSGPSSLATTPRPSSGESF--APTSTGSRINPLTGLDEQ--------LFQTLTSAVKAAL  349

Query  761  QALPLARRQFVRCLE--LAEQSRESEGLQMLWNNLIRRCRVCLEVSEALGLRLSNMKVKE  818
               P+   QF + LE   AEQ R  E L   W +LI RCR  +EV+EAL  RLSN+K+KE
Sbjct  350  VVWPMLTEQFSKSLEASSAEQQRAPEELAKKWRDLIDRCRQAMEVTEALRERLSNLKLKE  409

Query  819  -PGGGMRNQREFWQLCKAFMQSFVDLVTDMKEVRSMHLLPSDIIVVLRPVQRASREASRL  877
             PGGG RNQR+ W+LCKAF++S VDL+T +KE   MHLLP +I   LRP+ +A+REA+ L
Sbjct  410  EPGGGTRNQRKLWELCKAFLKSIVDLLTLIKEASVMHLLPPEIRPNLRPLAKATREATVL  469

Query  878  IEASPWS  884
            ++ S WS
Sbjct  470  LDLSSWS  476



Lambda      K        H        a         alpha
   0.314    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1261545516


Query= TCONS_00034848

Length=334


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00034849

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433447 pfam13741, MRP-S25, Mitochondrial ribosomal protein S2...  301     9e-105


>CDD:433447 pfam13741, MRP-S25, Mitochondrial ribosomal protein S25.  This 
is the family of fungal 37S mitochondrial ribosomal S25 proteins.
Length=221

 Score = 301 bits (772),  Expect = 9e-105, Method: Composition-based stats.
 Identities = 119/221 (54%), Positives = 150/221 (68%), Gaps = 2/221 (1%)

Query  8    ALRVRQTALRQHAAGKIRAPPKWLDVVADIPPAQVLVRNQAP-QHQLVRQRVKTLPGTSK  66
            A+ V +       +G ++  P W DVVA IPP+ +L R   P      RQR KTLPG S 
Sbjct  1    AVNVLERTSAYLKSGLLKKKPAWYDVVASIPPSTLLTRQPPPRSDPSTRQRTKTLPGKSN  60

Query  67   PQVVFEV-QEKRIKPKKASRMFLPTEIKYEEDQLRQEFFRDHPWELARPRVLVESTGKDS  125
             Q +++    K  + KK + +F P ++KY EDQLR++FFRDHPWELARP++LVE++GKD 
Sbjct  61   NQGLYKTRTNKSDRKKKNNPLFRPPKLKYLEDQLRKQFFRDHPWELARPKILVENSGKDH  120

Query  126  EHYDWSRLQQPGKRLDGESVVQRQLWLLNNVPDMTKSAAYDIARCEFYRLRLQEDIERRV  185
            +  DWSRL+Q GK LDGESVVQR L+LL NVPD++ S AYD AR EFYRLR+QE+IE RV
Sbjct  121  KKCDWSRLRQLGKPLDGESVVQRTLYLLKNVPDLSLSEAYDKARFEFYRLRMQEEIESRV  180

Query  186  AAEEAEATGATFGPSLLEVGMELENQEYERWKAWAKMEAQL  226
            A EEAE  GA FGPS LE G E E +  + WK  A+ E QL
Sbjct  181  AQEEAEMYGAVFGPSALERGFEKEQKVIDDWKKKAEEETQL  221



Lambda      K        H        a         alpha
   0.317    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00030229

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433447 pfam13741, MRP-S25, Mitochondrial ribosomal protein S2...  301     9e-105


>CDD:433447 pfam13741, MRP-S25, Mitochondrial ribosomal protein S25.  This 
is the family of fungal 37S mitochondrial ribosomal S25 proteins.
Length=221

 Score = 301 bits (772),  Expect = 9e-105, Method: Composition-based stats.
 Identities = 119/221 (54%), Positives = 150/221 (68%), Gaps = 2/221 (1%)

Query  8    ALRVRQTALRQHAAGKIRAPPKWLDVVADIPPAQVLVRNQAP-QHQLVRQRVKTLPGTSK  66
            A+ V +       +G ++  P W DVVA IPP+ +L R   P      RQR KTLPG S 
Sbjct  1    AVNVLERTSAYLKSGLLKKKPAWYDVVASIPPSTLLTRQPPPRSDPSTRQRTKTLPGKSN  60

Query  67   PQVVFEV-QEKRIKPKKASRMFLPTEIKYEEDQLRQEFFRDHPWELARPRVLVESTGKDS  125
             Q +++    K  + KK + +F P ++KY EDQLR++FFRDHPWELARP++LVE++GKD 
Sbjct  61   NQGLYKTRTNKSDRKKKNNPLFRPPKLKYLEDQLRKQFFRDHPWELARPKILVENSGKDH  120

Query  126  EHYDWSRLQQPGKRLDGESVVQRQLWLLNNVPDMTKSAAYDIARCEFYRLRLQEDIERRV  185
            +  DWSRL+Q GK LDGESVVQR L+LL NVPD++ S AYD AR EFYRLR+QE+IE RV
Sbjct  121  KKCDWSRLRQLGKPLDGESVVQRTLYLLKNVPDLSLSEAYDKARFEFYRLRMQEEIESRV  180

Query  186  AAEEAEATGATFGPSLLEVGMELENQEYERWKAWAKMEAQL  226
            A EEAE  GA FGPS LE G E E +  + WK  A+ E QL
Sbjct  181  AQEEAEMYGAVFGPSALERGFEKEQKVIDDWKKKAEEETQL  221



Lambda      K        H        a         alpha
   0.317    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00034850

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase          165     6e-47


>CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase.  
Length=404

 Score = 165 bits (419),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 100/449 (22%), Positives = 162/449 (36%), Gaps = 127/449 (28%)

Query  4    NGPVLLDSNTTHLIENPQSWTKLGHVLYVDQPAGTGFSTASNP--YPVRDNDRVTSDFYK  61
             GP  ++   T L ENP SW K+ ++L++DQP G GFS ++    Y   ++D+   D Y+
Sbjct  62   LGPFRVNPGKT-LYENPYSWNKVANILFLDQPVGVGFSYSNTSSDYKT-NDDKTAKDNYE  119

Query  62   WLQSFFSHFPNFRSKRVHMIGESYAGIYIPYFAYAI---AENQDNYPIDLRSISLGDGTL  118
            +LQ FF  FP ++S+  ++ GESYAG Y+P  A  I    +N     I+L+ +++G+G  
Sbjct  120  FLQKFFEKFPEYKSRDFYIAGESYAGHYVPALAQEILDGNKNGSKPKINLKGLAIGNG--  177

Query  119  GNPAAMTAVTVGTFLKSRKSLLQIPGEILSAFTQADQTCGFTTVLQQASQFPPKGKFEIV  178
                                       +     Q                          
Sbjct  178  ---------------------------LTDPLIQV-------------------------  185

Query  179  GDPENLNYKHRHRRHRFQQDQRRNLRNVMNETCNNHPTTPEQVSSSILNSTCYGSCATYS  238
                 + Y + H       +   +    +   C     + +Q     LN+ C        
Sbjct  186  --NSYVPYAYYHG--LISDELYES----LKRQCCGKYDSCDQ-----LNTKCA-------  225

Query  239  TAMNYLNAVSAAGTGKRCFDVYDITNDCT-----MIDP--LGLMASYLSRGDVQAALNLS  291
               N +   S         + Y+I   C+       DP        YL+R +V+ AL++ 
Sbjct  226  ---NLVENASKCIVSFGGINPYNIYTPCSTDTCGGYDPYDTSYAEKYLNRPEVRKALHV-  281

Query  292  PAPAGLAFAPCNSTILDTLLLAVPPTPPAYTILPSLVTEHNISVHVYSGDNDLLLNHLGT  351
                G  +  CN  +     L          I+P+L+ E  + V +YSGD DL+ N+LGT
Sbjct  282  NDSVG-KWEECNDDV--FNWLYDDIMKSMIPIVPNLL-EGGLRVLIYSGDVDLICNYLGT  337

Query  352  ELVLQNMTWGGAQGFSRKPSRIFYVDDAAPSLHGADACNVSVSHDSTGLSEGAQRCVPAG  411
            E  ++ + W G   F                        VS                 AG
Sbjct  338  EAWIKALNWSGKDDFR--------------------PWMVSPVDG-----------QVAG  366

Query  412  IWASERGVTYHLFRGAGHSVFIKKPREMF  440
               +   +T+   +GAGH V   +P E  
Sbjct  367  YVKTYGNLTFATVKGAGHMVPEDQPEEAL  395



Lambda      K        H        a         alpha
   0.319    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00034852

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase          165     6e-47


>CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase.  
Length=404

 Score = 165 bits (419),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 100/449 (22%), Positives = 162/449 (36%), Gaps = 127/449 (28%)

Query  4    NGPVLLDSNTTHLIENPQSWTKLGHVLYVDQPAGTGFSTASNP--YPVRDNDRVTSDFYK  61
             GP  ++   T L ENP SW K+ ++L++DQP G GFS ++    Y   ++D+   D Y+
Sbjct  62   LGPFRVNPGKT-LYENPYSWNKVANILFLDQPVGVGFSYSNTSSDYKT-NDDKTAKDNYE  119

Query  62   WLQSFFSHFPNFRSKRVHMIGESYAGIYIPYFAYAI---AENQDNYPIDLRSISLGDGTL  118
            +LQ FF  FP ++S+  ++ GESYAG Y+P  A  I    +N     I+L+ +++G+G  
Sbjct  120  FLQKFFEKFPEYKSRDFYIAGESYAGHYVPALAQEILDGNKNGSKPKINLKGLAIGNG--  177

Query  119  GNPAAMTAVTVGTFLKSRKSLLQIPGEILSAFTQADQTCGFTTVLQQASQFPPKGKFEIV  178
                                       +     Q                          
Sbjct  178  ---------------------------LTDPLIQV-------------------------  185

Query  179  GDPENLNYKHRHRRHRFQQDQRRNLRNVMNETCNNHPTTPEQVSSSILNSTCYGSCATYS  238
                 + Y + H       +   +    +   C     + +Q     LN+ C        
Sbjct  186  --NSYVPYAYYHG--LISDELYES----LKRQCCGKYDSCDQ-----LNTKCA-------  225

Query  239  TAMNYLNAVSAAGTGKRCFDVYDITNDCT-----MIDP--LGLMASYLSRGDVQAALNLS  291
               N +   S         + Y+I   C+       DP        YL+R +V+ AL++ 
Sbjct  226  ---NLVENASKCIVSFGGINPYNIYTPCSTDTCGGYDPYDTSYAEKYLNRPEVRKALHV-  281

Query  292  PAPAGLAFAPCNSTILDTLLLAVPPTPPAYTILPSLVTEHNISVHVYSGDNDLLLNHLGT  351
                G  +  CN  +     L          I+P+L+ E  + V +YSGD DL+ N+LGT
Sbjct  282  NDSVG-KWEECNDDV--FNWLYDDIMKSMIPIVPNLL-EGGLRVLIYSGDVDLICNYLGT  337

Query  352  ELVLQNMTWGGAQGFSRKPSRIFYVDDAAPSLHGADACNVSVSHDSTGLSEGAQRCVPAG  411
            E  ++ + W G   F                        VS                 AG
Sbjct  338  EAWIKALNWSGKDDFR--------------------PWMVSPVDG-----------QVAG  366

Query  412  IWASERGVTYHLFRGAGHSVFIKKPREMF  440
               +   +T+   +GAGH V   +P E  
Sbjct  367  YVKTYGNLTFATVKGAGHMVPEDQPEEAL  395



Lambda      K        H        a         alpha
   0.319    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00034851

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase          165     6e-47


>CDD:459815 pfam00450, Peptidase_S10, Serine carboxypeptidase.  
Length=404

 Score = 165 bits (419),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 100/449 (22%), Positives = 162/449 (36%), Gaps = 127/449 (28%)

Query  4    NGPVLLDSNTTHLIENPQSWTKLGHVLYVDQPAGTGFSTASNP--YPVRDNDRVTSDFYK  61
             GP  ++   T L ENP SW K+ ++L++DQP G GFS ++    Y   ++D+   D Y+
Sbjct  62   LGPFRVNPGKT-LYENPYSWNKVANILFLDQPVGVGFSYSNTSSDYKT-NDDKTAKDNYE  119

Query  62   WLQSFFSHFPNFRSKRVHMIGESYAGIYIPYFAYAI---AENQDNYPIDLRSISLGDGTL  118
            +LQ FF  FP ++S+  ++ GESYAG Y+P  A  I    +N     I+L+ +++G+G  
Sbjct  120  FLQKFFEKFPEYKSRDFYIAGESYAGHYVPALAQEILDGNKNGSKPKINLKGLAIGNG--  177

Query  119  GNPAAMTAVTVGTFLKSRKSLLQIPGEILSAFTQADQTCGFTTVLQQASQFPPKGKFEIV  178
                                       +     Q                          
Sbjct  178  ---------------------------LTDPLIQV-------------------------  185

Query  179  GDPENLNYKHRHRRHRFQQDQRRNLRNVMNETCNNHPTTPEQVSSSILNSTCYGSCATYS  238
                 + Y + H       +   +    +   C     + +Q     LN+ C        
Sbjct  186  --NSYVPYAYYHG--LISDELYES----LKRQCCGKYDSCDQ-----LNTKCA-------  225

Query  239  TAMNYLNAVSAAGTGKRCFDVYDITNDCT-----MIDP--LGLMASYLSRGDVQAALNLS  291
               N +   S         + Y+I   C+       DP        YL+R +V+ AL++ 
Sbjct  226  ---NLVENASKCIVSFGGINPYNIYTPCSTDTCGGYDPYDTSYAEKYLNRPEVRKALHV-  281

Query  292  PAPAGLAFAPCNSTILDTLLLAVPPTPPAYTILPSLVTEHNISVHVYSGDNDLLLNHLGT  351
                G  +  CN  +     L          I+P+L+ E  + V +YSGD DL+ N+LGT
Sbjct  282  NDSVG-KWEECNDDV--FNWLYDDIMKSMIPIVPNLL-EGGLRVLIYSGDVDLICNYLGT  337

Query  352  ELVLQNMTWGGAQGFSRKPSRIFYVDDAAPSLHGADACNVSVSHDSTGLSEGAQRCVPAG  411
            E  ++ + W G   F                        VS                 AG
Sbjct  338  EAWIKALNWSGKDDFR--------------------PWMVSPVDG-----------QVAG  366

Query  412  IWASERGVTYHLFRGAGHSVFIKKPREMF  440
               +   +T+   +GAGH V   +P E  
Sbjct  367  YVKTYGNLTFATVKGAGHMVPEDQPEEAL  395



Lambda      K        H        a         alpha
   0.319    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00030230

Length=987
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431280 pfam10428, SOG2, RAM signalling pathway protein. SOG2 ...  473     2e-158


>CDD:431280 pfam10428, SOG2, RAM signalling pathway protein.  SOG2 proteins 
in Saccharomyces cerevisiae are involved in cell separation 
and cytokinesis.
Length=476

 Score = 473 bits (1219),  Expect = 2e-158, Method: Composition-based stats.
 Identities = 205/487 (42%), Positives = 271/487 (56%), Gaps = 65/487 (13%)

Query  452  FVNRMSSLPEHKGEREARDPVI---ESAKGILFALFQVQSHVSAVINVIKRDDSRRNSLE  508
            +  R+SSLPE   E+    P++   E+A+G+LFAL Q+   +  +IN IK +  R +SLE
Sbjct  1    YFRRLSSLPESTIEKAVPVPLLELVEAARGLLFALSQIHQAIRQLINFIKDERVR-SSLE  59

Query  509  IVFYNASTHVDRLNEALGIAESSRQDDQDVLKLTNEAVKRECETCIVAYSHVGTQLRNSL  568
             V YNAS+HVD L EAL   +S      +       AVKR CETC+ A+ HV TQLR +L
Sbjct  60   RVLYNASSHVDNLIEALERFDSMDSRRGEPSPSVCRAVKRACETCVSAFKHVVTQLRLNL  119

Query  569  EKIVANGDSRYVRSLMLMIHGSIIELRNACMSLGVPLHSEK------RLSAGKTPVTAIT  622
            +  VANGD RY+R+L+LM++GS+ ELRNA  SLG  L + +      R    K P  +IT
Sbjct  120  KAFVANGDVRYIRTLLLMLYGSMAELRNAWASLGPLLEAVRPPSPKKRAGRTKQPSPSIT  179

Query  623  K------EPALSDRFCGPTVTPSRGDRPMSVRRY-----RSDTTIQHPRITTNGPLPTTS  671
                       S R    +VTP+R  R            RSDTTI HP    + P P  +
Sbjct  180  SGGSPSSPAESSTRPSSSSVTPTRRRRHAGSFSSKLPPLRSDTTIPHPGGNLSSPAPNGA  239

Query  672  NYQSTVS---------------------------SPGFASTPYSLGTRSRSSSKSN-LIN  703
               +                              S   + +  +  +RSRSSS+SN L++
Sbjct  240  QTPTPPRSATSPGVPSSAPTLGTGSTGAISRSNHSTSGSQSSLTSSSRSRSSSRSNTLLS  299

Query  704  SSVPSSLAT---PRSGETFPPIPTSVVPRINPLTGLDEIEEERIFEKIFHQLSAAYTAAL  760
            +S PSSLAT   P SGE+F   PTS   RINPLTGLDE         +F  L++A  AAL
Sbjct  300  TSGPSSLATTPRPSSGESF--APTSTGSRINPLTGLDEQ--------LFQTLTSAVKAAL  349

Query  761  QALPLARRQFVRCLE--LAEQSRESEGLQMLWNNLIRRCRVCLEVSEALGLRLSNMKVKE  818
               P+   QF + LE   AEQ R  E L   W +LI RCR  +EV+EAL  RLSN+K+KE
Sbjct  350  VVWPMLTEQFSKSLEASSAEQQRAPEELAKKWRDLIDRCRQAMEVTEALRERLSNLKLKE  409

Query  819  -PGGGMRNQREFWQLCKAFMQSFVDLVTDMKEVRSMHLLPSDIIVVLRPVQRASREASRL  877
             PGGG RNQR+ W+LCKAF++S VDL+T +KE   MHLLP +I   LRP+ +A+REA+ L
Sbjct  410  EPGGGTRNQRKLWELCKAFLKSIVDLLTLIKEASVMHLLPPEIRPNLRPLAKATREATVL  469

Query  878  IEASPWS  884
            ++ S WS
Sbjct  470  LDLSSWS  476



Lambda      K        H        a         alpha
   0.314    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0851    0.140     1.90     42.6     43.6 

Effective search space used: 1261545516


Query= TCONS_00030231

Length=972
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431280 pfam10428, SOG2, RAM signalling pathway protein. SOG2 ...  473     1e-158


>CDD:431280 pfam10428, SOG2, RAM signalling pathway protein.  SOG2 proteins 
in Saccharomyces cerevisiae are involved in cell separation 
and cytokinesis.
Length=476

 Score = 473 bits (1220),  Expect = 1e-158, Method: Composition-based stats.
 Identities = 205/487 (42%), Positives = 271/487 (56%), Gaps = 65/487 (13%)

Query  437  FVNRMSSLPEHKGEREARDPVI---ESAKGILFALFQVQSHVSAVINVIKRDDSRRNSLE  493
            +  R+SSLPE   E+    P++   E+A+G+LFAL Q+   +  +IN IK +  R +SLE
Sbjct  1    YFRRLSSLPESTIEKAVPVPLLELVEAARGLLFALSQIHQAIRQLINFIKDERVR-SSLE  59

Query  494  IVFYNASTHVDRLNEALGIAESSRQDDQDVLKLTNEAVKRECETCIVAYSHVGTQLRNSL  553
             V YNAS+HVD L EAL   +S      +       AVKR CETC+ A+ HV TQLR +L
Sbjct  60   RVLYNASSHVDNLIEALERFDSMDSRRGEPSPSVCRAVKRACETCVSAFKHVVTQLRLNL  119

Query  554  EKIVANGDSRYVRSLMLMIHGSIIELRNACMSLGVPLHSEK------RLSAGKTPVTAIT  607
            +  VANGD RY+R+L+LM++GS+ ELRNA  SLG  L + +      R    K P  +IT
Sbjct  120  KAFVANGDVRYIRTLLLMLYGSMAELRNAWASLGPLLEAVRPPSPKKRAGRTKQPSPSIT  179

Query  608  K------EPALSDRFCGPTVTPSRGDRPMSVRRY-----RSDTTIQHPRITTNGPLPTTS  656
                       S R    +VTP+R  R            RSDTTI HP    + P P  +
Sbjct  180  SGGSPSSPAESSTRPSSSSVTPTRRRRHAGSFSSKLPPLRSDTTIPHPGGNLSSPAPNGA  239

Query  657  NYQSTVS---------------------------SPGFASTPYSLGTRSRSSSKSN-LIN  688
               +                              S   + +  +  +RSRSSS+SN L++
Sbjct  240  QTPTPPRSATSPGVPSSAPTLGTGSTGAISRSNHSTSGSQSSLTSSSRSRSSSRSNTLLS  299

Query  689  SSVPSSLAT---PRSGETFPPIPTSVVPRINPLTGLDEIEEERIFEKIFHQLSAAYTAAL  745
            +S PSSLAT   P SGE+F   PTS   RINPLTGLDE         +F  L++A  AAL
Sbjct  300  TSGPSSLATTPRPSSGESF--APTSTGSRINPLTGLDEQ--------LFQTLTSAVKAAL  349

Query  746  QALPLARRQFVRCLE--LAEQSRESEGLQMLWNNLIRRCRVCLEVSEALGLRLSNMKVKE  803
               P+   QF + LE   AEQ R  E L   W +LI RCR  +EV+EAL  RLSN+K+KE
Sbjct  350  VVWPMLTEQFSKSLEASSAEQQRAPEELAKKWRDLIDRCRQAMEVTEALRERLSNLKLKE  409

Query  804  -PGGGMRNQREFWQLCKAFMQSFVDLVTDMKEVRSMHLLPSDIIVVLRPVQRASREASRL  862
             PGGG RNQR+ W+LCKAF++S VDL+T +KE   MHLLP +I   LRP+ +A+REA+ L
Sbjct  410  EPGGGTRNQRKLWELCKAFLKSIVDLLTLIKEASVMHLLPPEIRPNLRPLAKATREATVL  469

Query  863  IEASPWS  869
            ++ S WS
Sbjct  470  LDLSSWS  476



Lambda      K        H        a         alpha
   0.314    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1240307376


Query= TCONS_00030232

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00030233

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.144    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00030234

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461743 pfam05794, Tcp11, T-complex protein 11. This family co...  348     4e-116


>CDD:461743 pfam05794, Tcp11, T-complex protein 11.  This family consists 
of several eukaryotic T-complex protein 11 (Tcp11) related 
sequences. Tcp11 is only expressed in fertile adult mammalian 
testes and is thought to be important in sperm function and 
fertility. The family also contains the yeast Sok1 protein 
which is known to suppress cyclic AMP-dependent protein kinase 
mutants.
Length=390

 Score = 348 bits (896),  Expect = 4e-116, Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 215/466 (46%), Gaps = 92/466 (20%)

Query  126  LRMDANFDRDLHFKPDLDGEKGRRKRKEAGDYWEAMAAEIAIYAFCANQTEDTTNDDQQD  185
            LR +  FD D  F+P+LDGEKGR K   A  YW+A+  E+                    
Sbjct  1    LRHEIAFDPDFQFRPNLDGEKGRVKETMAKAYWDALREELEE------------------  42

Query  186  DPPQTFEPRLPAMFETLQDVLKTLV--PERDHPAVTQNLEVALLMQQVRKGVLDMVGIAN  243
            DPP     RLPA+ E ++D+L +L+  P R    +++ L++ L+ QQ+  GVLD+V +A 
Sbjct  43   DPPDY--SRLPALLEEIRDILLSLLLPPNRLRQQISEVLDLELIRQQLEHGVLDLVKLAE  100

Query  244  WLARLLKTHCAPMRDEWADRMVEQIRAGSESQDSMEIVRGLQTLFAILEAMKLDVANHQI  303
            +LA LLK  CAPMRDE   ++VE+I          ++V GL+ LF ILE MKLDVANHQI
Sbjct  101  FLASLLKKLCAPMRDEEVKKLVEKIL------SVDKLVDGLRALFEILELMKLDVANHQI  154

Query  304  RAFRVLLIEDTVPFLQEYFRSKIARDNFHVEASRLWYLDVRE---------QELRKLGKS  354
            R+ R LLIE  V + ++ F+ ++ +    + ++R W    RE                 S
Sbjct  155  RSLRPLLIEQAVEYERKKFQERLEKGPISLPSTRRWLRSAREELLAEADERDPEGSNHPS  214

Query  355  AHNDSFLPISLLFHGLTDILLQFH--GPEGFPETFVFDSDRLWQLRSGLQNLITLDICWF  412
            + + S  P+ +L  GL D+L        E FPET + D  RL +LR+ L+ L+ L  C  
Sbjct  215  SGDSSPSPLKILAQGLLDLLSWSDPVSEEEFPETLLLDHARLRELRADLRQLVVLAACLL  274

Query  413  IFESYVHTQKRYLSAPAQTYASFRSRIGSLMEENEACRRGSPRWLKNVRGIALEIARFAC  472
            +F++ +   KR +S+    +   +SRI +L+E+  +              IALEIAR   
Sbjct  275  VFKNLL---KRDVSSSRSFWKKLKSRILALLEDEPSSTEALE-------SIALEIAREVS  324

Query  473  AACSGDSMVSDAVIAPIEATLEWHLSNESSELFQYFQNALRQKLLASTFAFAKKYLNMSP  532
             + S   ++   +    +A L   +            + + + L +              
Sbjct  325  KSLSELGLLPL-MPEATKAWLRGQIQKLLQ-----PSDPVFKLLESE-------------  365

Query  533  LAICESQRSYSHSPLPQHYDIERISMRLAHIGVLHWRVWAPILYVH  578
                                   I+ RLA +  +HWRV+ P  Y  
Sbjct  366  -----------------------IAERLARLVNVHWRVFGP-WYEE  387



Lambda      K        H        a         alpha
   0.320    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 751697284


Query= TCONS_00034853

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00034854

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461743 pfam05794, Tcp11, T-complex protein 11. This family co...  345     2e-116


>CDD:461743 pfam05794, Tcp11, T-complex protein 11.  This family consists 
of several eukaryotic T-complex protein 11 (Tcp11) related 
sequences. Tcp11 is only expressed in fertile adult mammalian 
testes and is thought to be important in sperm function and 
fertility. The family also contains the yeast Sok1 protein 
which is known to suppress cyclic AMP-dependent protein kinase 
mutants.
Length=390

 Score = 345 bits (887),  Expect = 2e-116, Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 215/466 (46%), Gaps = 92/466 (20%)

Query  6    LRMDANFDRDLHFKPDLDGEKGRRKRKEAGDYWEAMAAEIAIYAFCANQTEDTTNDDQQD  65
            LR +  FD D  F+P+LDGEKGR K   A  YW+A+  E+                    
Sbjct  1    LRHEIAFDPDFQFRPNLDGEKGRVKETMAKAYWDALREELEE------------------  42

Query  66   DPPQTFEPRLPAMFETLQDVLKTLV--PERDHPAVTQNLEVALLMQQVRKGVLDMVGIAN  123
            DPP     RLPA+ E ++D+L +L+  P R    +++ L++ L+ QQ+  GVLD+V +A 
Sbjct  43   DPPDY--SRLPALLEEIRDILLSLLLPPNRLRQQISEVLDLELIRQQLEHGVLDLVKLAE  100

Query  124  WLARLLKTHCAPMRDEWADRMVEQIRAGSESQDSMEIVRGLQTLFAILEAMKLDVANHQI  183
            +LA LLK  CAPMRDE   ++VE+I          ++V GL+ LF ILE MKLDVANHQI
Sbjct  101  FLASLLKKLCAPMRDEEVKKLVEKIL------SVDKLVDGLRALFEILELMKLDVANHQI  154

Query  184  RAFRVLLIEDTVPFLQEYFRSKIARDNFHVEASRLWYLDVRE---------QELRKLGKS  234
            R+ R LLIE  V + ++ F+ ++ +    + ++R W    RE                 S
Sbjct  155  RSLRPLLIEQAVEYERKKFQERLEKGPISLPSTRRWLRSAREELLAEADERDPEGSNHPS  214

Query  235  AHNDSFLPISLLFHGLTDILLQFH--GPEGFPETFVFDSDRLWQLRSGLQNLITLDICWF  292
            + + S  P+ +L  GL D+L        E FPET + D  RL +LR+ L+ L+ L  C  
Sbjct  215  SGDSSPSPLKILAQGLLDLLSWSDPVSEEEFPETLLLDHARLRELRADLRQLVVLAACLL  274

Query  293  IFESYVHTQKRYLSAPAQTYASFRSRIGSLMEENEACRRGSPRWLKNVRGIALEIARFAC  352
            +F++ +   KR +S+    +   +SRI +L+E+  +              IALEIAR   
Sbjct  275  VFKNLL---KRDVSSSRSFWKKLKSRILALLEDEPSSTEALE-------SIALEIAREVS  324

Query  353  AACSGDSMVSDAVIAPIEATLEWHLSNESSELFQYFQNALRQKLLASTFAFAKKYLNMSP  412
             + S   ++   +    +A L   +            + + + L +              
Sbjct  325  KSLSELGLLPL-MPEATKAWLRGQIQKLLQ-----PSDPVFKLLESE-------------  365

Query  413  LAICESQRSYSHSPLPQHYDIERISMRLAHIGVLHWRVWAPILYVH  458
                                   I+ RLA +  +HWRV+ P  Y  
Sbjct  366  -----------------------IAERLARLVNVHWRVFGP-WYEE  387



Lambda      K        H        a         alpha
   0.322    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 590476040


Query= TCONS_00030237

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461743 pfam05794, Tcp11, T-complex protein 11. This family co...  348     4e-116


>CDD:461743 pfam05794, Tcp11, T-complex protein 11.  This family consists 
of several eukaryotic T-complex protein 11 (Tcp11) related 
sequences. Tcp11 is only expressed in fertile adult mammalian 
testes and is thought to be important in sperm function and 
fertility. The family also contains the yeast Sok1 protein 
which is known to suppress cyclic AMP-dependent protein kinase 
mutants.
Length=390

 Score = 348 bits (896),  Expect = 4e-116, Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 215/466 (46%), Gaps = 92/466 (20%)

Query  126  LRMDANFDRDLHFKPDLDGEKGRRKRKEAGDYWEAMAAEIAIYAFCANQTEDTTNDDQQD  185
            LR +  FD D  F+P+LDGEKGR K   A  YW+A+  E+                    
Sbjct  1    LRHEIAFDPDFQFRPNLDGEKGRVKETMAKAYWDALREELEE------------------  42

Query  186  DPPQTFEPRLPAMFETLQDVLKTLV--PERDHPAVTQNLEVALLMQQVRKGVLDMVGIAN  243
            DPP     RLPA+ E ++D+L +L+  P R    +++ L++ L+ QQ+  GVLD+V +A 
Sbjct  43   DPPDY--SRLPALLEEIRDILLSLLLPPNRLRQQISEVLDLELIRQQLEHGVLDLVKLAE  100

Query  244  WLARLLKTHCAPMRDEWADRMVEQIRAGSESQDSMEIVRGLQTLFAILEAMKLDVANHQI  303
            +LA LLK  CAPMRDE   ++VE+I          ++V GL+ LF ILE MKLDVANHQI
Sbjct  101  FLASLLKKLCAPMRDEEVKKLVEKIL------SVDKLVDGLRALFEILELMKLDVANHQI  154

Query  304  RAFRVLLIEDTVPFLQEYFRSKIARDNFHVEASRLWYLDVRE---------QELRKLGKS  354
            R+ R LLIE  V + ++ F+ ++ +    + ++R W    RE                 S
Sbjct  155  RSLRPLLIEQAVEYERKKFQERLEKGPISLPSTRRWLRSAREELLAEADERDPEGSNHPS  214

Query  355  AHNDSFLPISLLFHGLTDILLQFH--GPEGFPETFVFDSDRLWQLRSGLQNLITLDICWF  412
            + + S  P+ +L  GL D+L        E FPET + D  RL +LR+ L+ L+ L  C  
Sbjct  215  SGDSSPSPLKILAQGLLDLLSWSDPVSEEEFPETLLLDHARLRELRADLRQLVVLAACLL  274

Query  413  IFESYVHTQKRYLSAPAQTYASFRSRIGSLMEENEACRRGSPRWLKNVRGIALEIARFAC  472
            +F++ +   KR +S+    +   +SRI +L+E+  +              IALEIAR   
Sbjct  275  VFKNLL---KRDVSSSRSFWKKLKSRILALLEDEPSSTEALE-------SIALEIAREVS  324

Query  473  AACSGDSMVSDAVIAPIEATLEWHLSNESSELFQYFQNALRQKLLASTFAFAKKYLNMSP  532
             + S   ++   +    +A L   +            + + + L +              
Sbjct  325  KSLSELGLLPL-MPEATKAWLRGQIQKLLQ-----PSDPVFKLLESE-------------  365

Query  533  LAICESQRSYSHSPLPQHYDIERISMRLAHIGVLHWRVWAPILYVH  578
                                   I+ RLA +  +HWRV+ P  Y  
Sbjct  366  -----------------------IAERLARLVNVHWRVFGP-WYEE  387



Lambda      K        H        a         alpha
   0.320    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 751697284


Query= TCONS_00030236

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461743 pfam05794, Tcp11, T-complex protein 11. This family co...  348     4e-116


>CDD:461743 pfam05794, Tcp11, T-complex protein 11.  This family consists 
of several eukaryotic T-complex protein 11 (Tcp11) related 
sequences. Tcp11 is only expressed in fertile adult mammalian 
testes and is thought to be important in sperm function and 
fertility. The family also contains the yeast Sok1 protein 
which is known to suppress cyclic AMP-dependent protein kinase 
mutants.
Length=390

 Score = 348 bits (896),  Expect = 4e-116, Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 215/466 (46%), Gaps = 92/466 (20%)

Query  126  LRMDANFDRDLHFKPDLDGEKGRRKRKEAGDYWEAMAAEIAIYAFCANQTEDTTNDDQQD  185
            LR +  FD D  F+P+LDGEKGR K   A  YW+A+  E+                    
Sbjct  1    LRHEIAFDPDFQFRPNLDGEKGRVKETMAKAYWDALREELEE------------------  42

Query  186  DPPQTFEPRLPAMFETLQDVLKTLV--PERDHPAVTQNLEVALLMQQVRKGVLDMVGIAN  243
            DPP     RLPA+ E ++D+L +L+  P R    +++ L++ L+ QQ+  GVLD+V +A 
Sbjct  43   DPPDY--SRLPALLEEIRDILLSLLLPPNRLRQQISEVLDLELIRQQLEHGVLDLVKLAE  100

Query  244  WLARLLKTHCAPMRDEWADRMVEQIRAGSESQDSMEIVRGLQTLFAILEAMKLDVANHQI  303
            +LA LLK  CAPMRDE   ++VE+I          ++V GL+ LF ILE MKLDVANHQI
Sbjct  101  FLASLLKKLCAPMRDEEVKKLVEKIL------SVDKLVDGLRALFEILELMKLDVANHQI  154

Query  304  RAFRVLLIEDTVPFLQEYFRSKIARDNFHVEASRLWYLDVRE---------QELRKLGKS  354
            R+ R LLIE  V + ++ F+ ++ +    + ++R W    RE                 S
Sbjct  155  RSLRPLLIEQAVEYERKKFQERLEKGPISLPSTRRWLRSAREELLAEADERDPEGSNHPS  214

Query  355  AHNDSFLPISLLFHGLTDILLQFH--GPEGFPETFVFDSDRLWQLRSGLQNLITLDICWF  412
            + + S  P+ +L  GL D+L        E FPET + D  RL +LR+ L+ L+ L  C  
Sbjct  215  SGDSSPSPLKILAQGLLDLLSWSDPVSEEEFPETLLLDHARLRELRADLRQLVVLAACLL  274

Query  413  IFESYVHTQKRYLSAPAQTYASFRSRIGSLMEENEACRRGSPRWLKNVRGIALEIARFAC  472
            +F++ +   KR +S+    +   +SRI +L+E+  +              IALEIAR   
Sbjct  275  VFKNLL---KRDVSSSRSFWKKLKSRILALLEDEPSSTEALE-------SIALEIAREVS  324

Query  473  AACSGDSMVSDAVIAPIEATLEWHLSNESSELFQYFQNALRQKLLASTFAFAKKYLNMSP  532
             + S   ++   +    +A L   +            + + + L +              
Sbjct  325  KSLSELGLLPL-MPEATKAWLRGQIQKLLQ-----PSDPVFKLLESE-------------  365

Query  533  LAICESQRSYSHSPLPQHYDIERISMRLAHIGVLHWRVWAPILYVH  578
                                   I+ RLA +  +HWRV+ P  Y  
Sbjct  366  -----------------------IAERLARLVNVHWRVFGP-WYEE  387



Lambda      K        H        a         alpha
   0.320    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 751697284


Query= TCONS_00030235

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461743 pfam05794, Tcp11, T-complex protein 11. This family co...  348     4e-116


>CDD:461743 pfam05794, Tcp11, T-complex protein 11.  This family consists 
of several eukaryotic T-complex protein 11 (Tcp11) related 
sequences. Tcp11 is only expressed in fertile adult mammalian 
testes and is thought to be important in sperm function and 
fertility. The family also contains the yeast Sok1 protein 
which is known to suppress cyclic AMP-dependent protein kinase 
mutants.
Length=390

 Score = 348 bits (896),  Expect = 4e-116, Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 215/466 (46%), Gaps = 92/466 (20%)

Query  126  LRMDANFDRDLHFKPDLDGEKGRRKRKEAGDYWEAMAAEIAIYAFCANQTEDTTNDDQQD  185
            LR +  FD D  F+P+LDGEKGR K   A  YW+A+  E+                    
Sbjct  1    LRHEIAFDPDFQFRPNLDGEKGRVKETMAKAYWDALREELEE------------------  42

Query  186  DPPQTFEPRLPAMFETLQDVLKTLV--PERDHPAVTQNLEVALLMQQVRKGVLDMVGIAN  243
            DPP     RLPA+ E ++D+L +L+  P R    +++ L++ L+ QQ+  GVLD+V +A 
Sbjct  43   DPPDY--SRLPALLEEIRDILLSLLLPPNRLRQQISEVLDLELIRQQLEHGVLDLVKLAE  100

Query  244  WLARLLKTHCAPMRDEWADRMVEQIRAGSESQDSMEIVRGLQTLFAILEAMKLDVANHQI  303
            +LA LLK  CAPMRDE   ++VE+I          ++V GL+ LF ILE MKLDVANHQI
Sbjct  101  FLASLLKKLCAPMRDEEVKKLVEKIL------SVDKLVDGLRALFEILELMKLDVANHQI  154

Query  304  RAFRVLLIEDTVPFLQEYFRSKIARDNFHVEASRLWYLDVRE---------QELRKLGKS  354
            R+ R LLIE  V + ++ F+ ++ +    + ++R W    RE                 S
Sbjct  155  RSLRPLLIEQAVEYERKKFQERLEKGPISLPSTRRWLRSAREELLAEADERDPEGSNHPS  214

Query  355  AHNDSFLPISLLFHGLTDILLQFH--GPEGFPETFVFDSDRLWQLRSGLQNLITLDICWF  412
            + + S  P+ +L  GL D+L        E FPET + D  RL +LR+ L+ L+ L  C  
Sbjct  215  SGDSSPSPLKILAQGLLDLLSWSDPVSEEEFPETLLLDHARLRELRADLRQLVVLAACLL  274

Query  413  IFESYVHTQKRYLSAPAQTYASFRSRIGSLMEENEACRRGSPRWLKNVRGIALEIARFAC  472
            +F++ +   KR +S+    +   +SRI +L+E+  +              IALEIAR   
Sbjct  275  VFKNLL---KRDVSSSRSFWKKLKSRILALLEDEPSSTEALE-------SIALEIAREVS  324

Query  473  AACSGDSMVSDAVIAPIEATLEWHLSNESSELFQYFQNALRQKLLASTFAFAKKYLNMSP  532
             + S   ++   +    +A L   +            + + + L +              
Sbjct  325  KSLSELGLLPL-MPEATKAWLRGQIQKLLQ-----PSDPVFKLLESE-------------  365

Query  533  LAICESQRSYSHSPLPQHYDIERISMRLAHIGVLHWRVWAPILYVH  578
                                   I+ RLA +  +HWRV+ P  Y  
Sbjct  366  -----------------------IAERLARLVNVHWRVFGP-WYEE  387



Lambda      K        H        a         alpha
   0.320    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 751697284


Query= TCONS_00030238

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461743 pfam05794, Tcp11, T-complex protein 11. This family co...  348     4e-116


>CDD:461743 pfam05794, Tcp11, T-complex protein 11.  This family consists 
of several eukaryotic T-complex protein 11 (Tcp11) related 
sequences. Tcp11 is only expressed in fertile adult mammalian 
testes and is thought to be important in sperm function and 
fertility. The family also contains the yeast Sok1 protein 
which is known to suppress cyclic AMP-dependent protein kinase 
mutants.
Length=390

 Score = 348 bits (896),  Expect = 4e-116, Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 215/466 (46%), Gaps = 92/466 (20%)

Query  126  LRMDANFDRDLHFKPDLDGEKGRRKRKEAGDYWEAMAAEIAIYAFCANQTEDTTNDDQQD  185
            LR +  FD D  F+P+LDGEKGR K   A  YW+A+  E+                    
Sbjct  1    LRHEIAFDPDFQFRPNLDGEKGRVKETMAKAYWDALREELEE------------------  42

Query  186  DPPQTFEPRLPAMFETLQDVLKTLV--PERDHPAVTQNLEVALLMQQVRKGVLDMVGIAN  243
            DPP     RLPA+ E ++D+L +L+  P R    +++ L++ L+ QQ+  GVLD+V +A 
Sbjct  43   DPPDY--SRLPALLEEIRDILLSLLLPPNRLRQQISEVLDLELIRQQLEHGVLDLVKLAE  100

Query  244  WLARLLKTHCAPMRDEWADRMVEQIRAGSESQDSMEIVRGLQTLFAILEAMKLDVANHQI  303
            +LA LLK  CAPMRDE   ++VE+I          ++V GL+ LF ILE MKLDVANHQI
Sbjct  101  FLASLLKKLCAPMRDEEVKKLVEKIL------SVDKLVDGLRALFEILELMKLDVANHQI  154

Query  304  RAFRVLLIEDTVPFLQEYFRSKIARDNFHVEASRLWYLDVRE---------QELRKLGKS  354
            R+ R LLIE  V + ++ F+ ++ +    + ++R W    RE                 S
Sbjct  155  RSLRPLLIEQAVEYERKKFQERLEKGPISLPSTRRWLRSAREELLAEADERDPEGSNHPS  214

Query  355  AHNDSFLPISLLFHGLTDILLQFH--GPEGFPETFVFDSDRLWQLRSGLQNLITLDICWF  412
            + + S  P+ +L  GL D+L        E FPET + D  RL +LR+ L+ L+ L  C  
Sbjct  215  SGDSSPSPLKILAQGLLDLLSWSDPVSEEEFPETLLLDHARLRELRADLRQLVVLAACLL  274

Query  413  IFESYVHTQKRYLSAPAQTYASFRSRIGSLMEENEACRRGSPRWLKNVRGIALEIARFAC  472
            +F++ +   KR +S+    +   +SRI +L+E+  +              IALEIAR   
Sbjct  275  VFKNLL---KRDVSSSRSFWKKLKSRILALLEDEPSSTEALE-------SIALEIAREVS  324

Query  473  AACSGDSMVSDAVIAPIEATLEWHLSNESSELFQYFQNALRQKLLASTFAFAKKYLNMSP  532
             + S   ++   +    +A L   +            + + + L +              
Sbjct  325  KSLSELGLLPL-MPEATKAWLRGQIQKLLQ-----PSDPVFKLLESE-------------  365

Query  533  LAICESQRSYSHSPLPQHYDIERISMRLAHIGVLHWRVWAPILYVH  578
                                   I+ RLA +  +HWRV+ P  Y  
Sbjct  366  -----------------------IAERLARLVNVHWRVFGP-WYEE  387



Lambda      K        H        a         alpha
   0.320    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 751697284


Query= TCONS_00030239

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461743 pfam05794, Tcp11, T-complex protein 11. This family co...  345     2e-116


>CDD:461743 pfam05794, Tcp11, T-complex protein 11.  This family consists 
of several eukaryotic T-complex protein 11 (Tcp11) related 
sequences. Tcp11 is only expressed in fertile adult mammalian 
testes and is thought to be important in sperm function and 
fertility. The family also contains the yeast Sok1 protein 
which is known to suppress cyclic AMP-dependent protein kinase 
mutants.
Length=390

 Score = 345 bits (887),  Expect = 2e-116, Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 215/466 (46%), Gaps = 92/466 (20%)

Query  6    LRMDANFDRDLHFKPDLDGEKGRRKRKEAGDYWEAMAAEIAIYAFCANQTEDTTNDDQQD  65
            LR +  FD D  F+P+LDGEKGR K   A  YW+A+  E+                    
Sbjct  1    LRHEIAFDPDFQFRPNLDGEKGRVKETMAKAYWDALREELEE------------------  42

Query  66   DPPQTFEPRLPAMFETLQDVLKTLV--PERDHPAVTQNLEVALLMQQVRKGVLDMVGIAN  123
            DPP     RLPA+ E ++D+L +L+  P R    +++ L++ L+ QQ+  GVLD+V +A 
Sbjct  43   DPPDY--SRLPALLEEIRDILLSLLLPPNRLRQQISEVLDLELIRQQLEHGVLDLVKLAE  100

Query  124  WLARLLKTHCAPMRDEWADRMVEQIRAGSESQDSMEIVRGLQTLFAILEAMKLDVANHQI  183
            +LA LLK  CAPMRDE   ++VE+I          ++V GL+ LF ILE MKLDVANHQI
Sbjct  101  FLASLLKKLCAPMRDEEVKKLVEKIL------SVDKLVDGLRALFEILELMKLDVANHQI  154

Query  184  RAFRVLLIEDTVPFLQEYFRSKIARDNFHVEASRLWYLDVRE---------QELRKLGKS  234
            R+ R LLIE  V + ++ F+ ++ +    + ++R W    RE                 S
Sbjct  155  RSLRPLLIEQAVEYERKKFQERLEKGPISLPSTRRWLRSAREELLAEADERDPEGSNHPS  214

Query  235  AHNDSFLPISLLFHGLTDILLQFH--GPEGFPETFVFDSDRLWQLRSGLQNLITLDICWF  292
            + + S  P+ +L  GL D+L        E FPET + D  RL +LR+ L+ L+ L  C  
Sbjct  215  SGDSSPSPLKILAQGLLDLLSWSDPVSEEEFPETLLLDHARLRELRADLRQLVVLAACLL  274

Query  293  IFESYVHTQKRYLSAPAQTYASFRSRIGSLMEENEACRRGSPRWLKNVRGIALEIARFAC  352
            +F++ +   KR +S+    +   +SRI +L+E+  +              IALEIAR   
Sbjct  275  VFKNLL---KRDVSSSRSFWKKLKSRILALLEDEPSSTEALE-------SIALEIAREVS  324

Query  353  AACSGDSMVSDAVIAPIEATLEWHLSNESSELFQYFQNALRQKLLASTFAFAKKYLNMSP  412
             + S   ++   +    +A L   +            + + + L +              
Sbjct  325  KSLSELGLLPL-MPEATKAWLRGQIQKLLQ-----PSDPVFKLLESE-------------  365

Query  413  LAICESQRSYSHSPLPQHYDIERISMRLAHIGVLHWRVWAPILYVH  458
                                   I+ RLA +  +HWRV+ P  Y  
Sbjct  366  -----------------------IAERLARLVNVHWRVFGP-WYEE  387



Lambda      K        H        a         alpha
   0.322    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 590476040


Query= TCONS_00030241

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461743 pfam05794, Tcp11, T-complex protein 11. This family co...  348     4e-116


>CDD:461743 pfam05794, Tcp11, T-complex protein 11.  This family consists 
of several eukaryotic T-complex protein 11 (Tcp11) related 
sequences. Tcp11 is only expressed in fertile adult mammalian 
testes and is thought to be important in sperm function and 
fertility. The family also contains the yeast Sok1 protein 
which is known to suppress cyclic AMP-dependent protein kinase 
mutants.
Length=390

 Score = 348 bits (896),  Expect = 4e-116, Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 215/466 (46%), Gaps = 92/466 (20%)

Query  126  LRMDANFDRDLHFKPDLDGEKGRRKRKEAGDYWEAMAAEIAIYAFCANQTEDTTNDDQQD  185
            LR +  FD D  F+P+LDGEKGR K   A  YW+A+  E+                    
Sbjct  1    LRHEIAFDPDFQFRPNLDGEKGRVKETMAKAYWDALREELEE------------------  42

Query  186  DPPQTFEPRLPAMFETLQDVLKTLV--PERDHPAVTQNLEVALLMQQVRKGVLDMVGIAN  243
            DPP     RLPA+ E ++D+L +L+  P R    +++ L++ L+ QQ+  GVLD+V +A 
Sbjct  43   DPPDY--SRLPALLEEIRDILLSLLLPPNRLRQQISEVLDLELIRQQLEHGVLDLVKLAE  100

Query  244  WLARLLKTHCAPMRDEWADRMVEQIRAGSESQDSMEIVRGLQTLFAILEAMKLDVANHQI  303
            +LA LLK  CAPMRDE   ++VE+I          ++V GL+ LF ILE MKLDVANHQI
Sbjct  101  FLASLLKKLCAPMRDEEVKKLVEKIL------SVDKLVDGLRALFEILELMKLDVANHQI  154

Query  304  RAFRVLLIEDTVPFLQEYFRSKIARDNFHVEASRLWYLDVRE---------QELRKLGKS  354
            R+ R LLIE  V + ++ F+ ++ +    + ++R W    RE                 S
Sbjct  155  RSLRPLLIEQAVEYERKKFQERLEKGPISLPSTRRWLRSAREELLAEADERDPEGSNHPS  214

Query  355  AHNDSFLPISLLFHGLTDILLQFH--GPEGFPETFVFDSDRLWQLRSGLQNLITLDICWF  412
            + + S  P+ +L  GL D+L        E FPET + D  RL +LR+ L+ L+ L  C  
Sbjct  215  SGDSSPSPLKILAQGLLDLLSWSDPVSEEEFPETLLLDHARLRELRADLRQLVVLAACLL  274

Query  413  IFESYVHTQKRYLSAPAQTYASFRSRIGSLMEENEACRRGSPRWLKNVRGIALEIARFAC  472
            +F++ +   KR +S+    +   +SRI +L+E+  +              IALEIAR   
Sbjct  275  VFKNLL---KRDVSSSRSFWKKLKSRILALLEDEPSSTEALE-------SIALEIAREVS  324

Query  473  AACSGDSMVSDAVIAPIEATLEWHLSNESSELFQYFQNALRQKLLASTFAFAKKYLNMSP  532
             + S   ++   +    +A L   +            + + + L +              
Sbjct  325  KSLSELGLLPL-MPEATKAWLRGQIQKLLQ-----PSDPVFKLLESE-------------  365

Query  533  LAICESQRSYSHSPLPQHYDIERISMRLAHIGVLHWRVWAPILYVH  578
                                   I+ RLA +  +HWRV+ P  Y  
Sbjct  366  -----------------------IAERLARLVNVHWRVFGP-WYEE  387



Lambda      K        H        a         alpha
   0.320    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 751697284


Query= TCONS_00030240

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461743 pfam05794, Tcp11, T-complex protein 11. This family co...  348     4e-116


>CDD:461743 pfam05794, Tcp11, T-complex protein 11.  This family consists 
of several eukaryotic T-complex protein 11 (Tcp11) related 
sequences. Tcp11 is only expressed in fertile adult mammalian 
testes and is thought to be important in sperm function and 
fertility. The family also contains the yeast Sok1 protein 
which is known to suppress cyclic AMP-dependent protein kinase 
mutants.
Length=390

 Score = 348 bits (896),  Expect = 4e-116, Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 215/466 (46%), Gaps = 92/466 (20%)

Query  126  LRMDANFDRDLHFKPDLDGEKGRRKRKEAGDYWEAMAAEIAIYAFCANQTEDTTNDDQQD  185
            LR +  FD D  F+P+LDGEKGR K   A  YW+A+  E+                    
Sbjct  1    LRHEIAFDPDFQFRPNLDGEKGRVKETMAKAYWDALREELEE------------------  42

Query  186  DPPQTFEPRLPAMFETLQDVLKTLV--PERDHPAVTQNLEVALLMQQVRKGVLDMVGIAN  243
            DPP     RLPA+ E ++D+L +L+  P R    +++ L++ L+ QQ+  GVLD+V +A 
Sbjct  43   DPPDY--SRLPALLEEIRDILLSLLLPPNRLRQQISEVLDLELIRQQLEHGVLDLVKLAE  100

Query  244  WLARLLKTHCAPMRDEWADRMVEQIRAGSESQDSMEIVRGLQTLFAILEAMKLDVANHQI  303
            +LA LLK  CAPMRDE   ++VE+I          ++V GL+ LF ILE MKLDVANHQI
Sbjct  101  FLASLLKKLCAPMRDEEVKKLVEKIL------SVDKLVDGLRALFEILELMKLDVANHQI  154

Query  304  RAFRVLLIEDTVPFLQEYFRSKIARDNFHVEASRLWYLDVRE---------QELRKLGKS  354
            R+ R LLIE  V + ++ F+ ++ +    + ++R W    RE                 S
Sbjct  155  RSLRPLLIEQAVEYERKKFQERLEKGPISLPSTRRWLRSAREELLAEADERDPEGSNHPS  214

Query  355  AHNDSFLPISLLFHGLTDILLQFH--GPEGFPETFVFDSDRLWQLRSGLQNLITLDICWF  412
            + + S  P+ +L  GL D+L        E FPET + D  RL +LR+ L+ L+ L  C  
Sbjct  215  SGDSSPSPLKILAQGLLDLLSWSDPVSEEEFPETLLLDHARLRELRADLRQLVVLAACLL  274

Query  413  IFESYVHTQKRYLSAPAQTYASFRSRIGSLMEENEACRRGSPRWLKNVRGIALEIARFAC  472
            +F++ +   KR +S+    +   +SRI +L+E+  +              IALEIAR   
Sbjct  275  VFKNLL---KRDVSSSRSFWKKLKSRILALLEDEPSSTEALE-------SIALEIAREVS  324

Query  473  AACSGDSMVSDAVIAPIEATLEWHLSNESSELFQYFQNALRQKLLASTFAFAKKYLNMSP  532
             + S   ++   +    +A L   +            + + + L +              
Sbjct  325  KSLSELGLLPL-MPEATKAWLRGQIQKLLQ-----PSDPVFKLLESE-------------  365

Query  533  LAICESQRSYSHSPLPQHYDIERISMRLAHIGVLHWRVWAPILYVH  578
                                   I+ RLA +  +HWRV+ P  Y  
Sbjct  366  -----------------------IAERLARLVNVHWRVFGP-WYEE  387



Lambda      K        H        a         alpha
   0.320    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 751697284


Query= TCONS_00030242

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401193 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 ...  283     3e-95


>CDD:401193 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA splicing 
MRS1.  Members of this family adopt a secondary structure 
consisting of two beta sheets and one alpha helix, arranged 
as a beta-alpha-beta motif. Each beta sheet has five strands, 
arranged in a 32145 order, with the second strand being 
antiparallel to the rest. Mitochondrial resolvase Ydc2 is 
capable of resolving Holliday junctions and cleaves DNA after 
5'-CT-3' and 5'-TT-3' sequences. This family also contains 
the mitochondrial RNA-splicing protein MRS1 which is involved 
in the excision of group I introns.
Length=251

 Score = 283 bits (726),  Expect = 3e-95, Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 161/307 (52%), Gaps = 56/307 (18%)

Query  74   ILSIDMGIQNLAYAHLLVPRDSHTATAGTVVKLNAWRRLAVSDALLDLAPDSLGKIQEGR  133
            ILSID+GI+N AY  L VP     A   +   L AW +L +                   
Sbjct  1    ILSIDLGIKNFAYCKLKVPSP--KAPTRSFPTLTAWLKLNLDL-----------------  41

Query  134  ASNASKLTGKANVKRKEKEKHTFSPSEYARTAYALVTRLLHAYRPSHVLIERQRFRSGGG  193
                 +  GK      EK+K +FSP  YA  AY LV+ LL  Y P+HVLIERQRFRSGGG
Sbjct  42   -----RFGGKDAFATDEKQKISFSPRYYAFLAYKLVSTLLLPYNPTHVLIERQRFRSGGG  96

Query  194  SAVQEWTLRVGVFEGMLYAVLHALGQAGEGAEAGMRPVVLGVEPRRVGAYWEDRLGVDVD  253
            SAV EWTLRV + EGMLYAVL+AL Q  +G +A    VV+ V P+R+  YW +R  +  +
Sbjct  97   SAVLEWTLRVNILEGMLYAVLYALKQESKGKKARS--VVIPVNPKRMANYWCERTEILAE  154

Query  254  APKKKKKKASSREGKKVKINIAGEWLRAGMGGVEAGSGSALGSPFRLSVADDSELRALVN  313
            + K +KKK SS+  KK++I++ G WL   +            S    +V D       + 
Sbjct  155  STKPRKKKKSSKNSKKLRIDLVGSWLSNAI------------STLPFAVPDGE----DLE  198

Query  314  AYLRRWAGKSNAGKSVSRARAKAEGQAAVEEDGAVFEPPDVRKMDDLADCLVQGVTWLEW  373
            AYL +W  K+   KS+   +                +  D  K+DDLAD L+QG+TWLEW
Sbjct  199  AYLPKWEAKTKNKKSLKEYKD--------------IKLLDSGKLDDLADSLLQGLTWLEW  244

Query  374  QAMRQRV  380
            QA R+++
Sbjct  245  QANREKL  251



Lambda      K        H        a         alpha
   0.315    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00030243

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00030244

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00030245

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00034858

Length=289


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 327287968


Query= TCONS_00034859

Length=289


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 327287968


Query= TCONS_00030247

Length=355
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462754 pfam09320, DUF1977, Domain of unknown function (DUF197...  151     2e-46
CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  97.9    2e-26


>CDD:462754 pfam09320, DUF1977, Domain of unknown function (DUF1977).  Members 
of this family of functionally uncharacterized domains 
are predominantly found in dnaj-like proteins.
Length=108

 Score = 151 bits (384),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 47/97 (48%), Positives = 68/97 (70%), Gaps = 1/97 (1%)

Query  253  YRFDAAVPP-HTMQRTTPKYNINYFVNPRDVEDYSAKKLRQLDTKVEVDYITKLRYECES  311
            Y FD    P +T+QRTTP   + Y+VNP  V+ YS +KLR+L+ +VE DY+  LR ECE 
Sbjct  12   YSFDPPPSPKYTVQRTTPNLKVPYYVNPNFVQKYSGRKLRRLEKEVEEDYVQNLRNECER  71

Query  312  EVHARDRMMQEAQGWFFPDVEKMKEARSMELKSCRQL  348
            E   ++R+++ AQGWFF D EK+++AR+M + SC +L
Sbjct  72   ERQQKERLIERAQGWFFGDEEKLEKARAMPMPSCERL  108


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 97.9 bits (245),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 37/62 (60%), Positives = 47/62 (76%), Gaps = 1/62 (2%)

Query  48   YYEILALDKSASDGEIKKAYRKLSLLTHPDKN-GYEGADEAFKMVSRAFQVLSDPDKKSK  106
            YYEIL +   ASD EIKKAYRKL+L  HPDKN G   A+E FK ++ A++VLSDP+K++ 
Sbjct  2    YYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRAI  61

Query  107  YD  108
            YD
Sbjct  62   YD  63



Lambda      K        H        a         alpha
   0.316    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00030248

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462754 pfam09320, DUF1977, Domain of unknown function (DUF197...  153     1e-46
CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  99.1    1e-26


>CDD:462754 pfam09320, DUF1977, Domain of unknown function (DUF1977).  Members 
of this family of functionally uncharacterized domains 
are predominantly found in dnaj-like proteins.
Length=108

 Score = 153 bits (388),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 47/97 (48%), Positives = 68/97 (70%), Gaps = 1/97 (1%)

Query  274  YRFDAAVPP-HTMQRTTPKYNINYFVNPRDVEDYSAKKLRQLDTKVEVDYITKLRYECES  332
            Y FD    P +T+QRTTP   + Y+VNP  V+ YS +KLR+L+ +VE DY+  LR ECE 
Sbjct  12   YSFDPPPSPKYTVQRTTPNLKVPYYVNPNFVQKYSGRKLRRLEKEVEEDYVQNLRNECER  71

Query  333  EVHARDRMMQEAQGWFFPDVEKMKEARSMELKSCRQL  369
            E   ++R+++ AQGWFF D EK+++AR+M + SC +L
Sbjct  72   ERQQKERLIERAQGWFFGDEEKLEKARAMPMPSCERL  108


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 99.1 bits (248),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 37/62 (60%), Positives = 47/62 (76%), Gaps = 1/62 (2%)

Query  48   YYEILALDKSASDGEIKKAYRKLSLLTHPDKN-GYEGADEAFKMVSRAFQVLSDPDKKSK  106
            YYEIL +   ASD EIKKAYRKL+L  HPDKN G   A+E FK ++ A++VLSDP+K++ 
Sbjct  2    YYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRAI  61

Query  107  YD  108
            YD
Sbjct  62   YD  63



Lambda      K        H        a         alpha
   0.316    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453018240


Query= TCONS_00034860

Length=640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463080 pfam10408, Ufd2P_core, Ubiquitin elongating factor cor...  829     0.0  


>CDD:463080 pfam10408, Ufd2P_core, Ubiquitin elongating factor core.  This 
is the most conserved part of the core region of Ufd2P ubiquitin 
elongating factor or E4, running from helix alpha-11 
to alpha-38. It consists of 31 helices of variable length connected 
by loops of variable size forming a compact unit; the 
helical packing pattern of the compact unit consists of five 
structural repeats that resemble tandem Armadillo (ARM) repeats. 
This domain is involved in ubiquitination as it binds 
Cdc48p and escorts ubiquitinated proteins from Cdc48p to the 
proteasome for degradation. The core is structurally similar 
to the nuclear transporter protein importin-alpha. The core 
is associated with the U-box at the C-terminus, pfam04564, 
which has ligase activity.
Length=594

 Score = 829 bits (2145),  Expect = 0.0, Method: Composition-based stats.
 Identities = 309/615 (50%), Positives = 410/615 (67%), Gaps = 44/615 (7%)

Query  1    MTYFSSPKTRDQSYILNAQRSMRMIQQMLSSDLFDVVNHIIRANKEARDRVLDWFAAALN  60
              YFS+PKTR  + I ++Q S+R   + L   LF +VN ++RA+ E+R+RVLDWFA  +N
Sbjct  18   KKYFSNPKTRSPADIESSQSSLRQELKTLQEQLFQIVNKLLRASPESRERVLDWFAQIIN  77

Query  61   INHKRRAMQVDPTTVASDGFMFNLTTCLDKLCEPFMDATFTKIDRIDAGYL-HRNPRVDM  119
            +NHKRR MQVDP TV+SDGFM NLT  L +LCEPF+DATF+KID+ID  YL  R+ R+D+
Sbjct  78   LNHKRRKMQVDPNTVSSDGFMLNLTAVLLRLCEPFLDATFSKIDKIDPDYLLPRSSRIDI  137

Query  120  KDETKINADQHASDAFYSKQE-EGTTNFITEIFFLTVAAHHYGSESLTSKLDQLEKDLRH  178
             DET++NADQ  +D FY ++  EG  NFITE FFLT+AA H G     SK  +L ++L+ 
Sbjct  138  SDETRLNADQEEADEFYEQKAKEGEPNFITECFFLTLAALHLGILPAISKYKRLARELKR  197

Query  179  MEGTIRRFELERPRWIHNPVQLRVFEQALRKYKDKLDLGLALKYSLQGVLFDDQWQARSM  238
            ++                                      A K + + VL D     RS+
Sbjct  198  LQ--------------------------------------AEKLAYEAVLLDPSLLQRSL  219

Query  239  LFMRYVIVWLLRLVSGVN-FPKEPIKLPLPEQQPEVFKCLPEYFVDDIVSNFKFIMWCMP  297
             F+R+V  WLLR+    + +PK+P+KLPLP + PE FK LPEYF++DIV    F+    P
Sbjct  220  QFLRFVATWLLRVADPKHQYPKKPLKLPLPAEPPEPFKYLPEYFIEDIVDFLLFVTRFAP  279

Query  298  QIITA-TQGDELVMLCITFLESSDYIKNPYLKAGLVSILFRGTWPRPGGARGVLVDLLNS  356
             I+ + +Q DEL+  CI FL S +YIKNP+LKA LV +LF GT PR  G  GVL D+L S
Sbjct  280  DILESLSQLDELITFCIVFLRSPEYIKNPHLKAKLVEVLFYGTPPRQNGRPGVLGDILES  339

Query  357  FPFANEYLLHAVMKFYIEAEHTGTHTQFFDKFNIRYEIFQIIKCIWPNTLYRNKLYNQSK  416
             P A ++LL A+MKFYI+ E TG  +QF+DKFNIRY I QI+K +W N  YR +L  ++K
Sbjct  340  HPLALKHLLPALMKFYIDVEKTGASSQFYDKFNIRYNISQILKYLWKNPSYREQLKKEAK  399

Query  417  QNLDFFVRFVNLLLNDVTYVLDESFGAFITIHDTQVELSRNG--NNMDPQERQQKEEHLA  474
            +N DFFVRFVNLLLNDVT++LDES      IH+ Q E++       +  +ERQ++EE L 
Sbjct  400  ENEDFFVRFVNLLLNDVTFLLDESLSKLKEIHELQEEMADAAEWEALPEEERQEREEQLR  459

Query  475  SAQRNAKSYMQLTNETVAMLKLFTEALADSFTMPEIVQRLADMLDYNLDAMVGPKSSSLR  534
            S +R AKSY+QL NETV +LKLFT+ + + F MPEIV RLA ML+YNLD +VGPK  +L+
Sbjct  460  SLERQAKSYLQLANETVKLLKLFTKEIPEPFLMPEIVDRLAAMLNYNLDQLVGPKCKNLK  519

Query  535  VDNLQEYGFNPRALLSEIVDVYLNLMGKENFILAVARDGRSYKPANFQKAGEILRKWSLK  594
            V N ++YGFNP+ LLS+IVD+YLNL  +  F+ AVARDGRSY P  F+KA  ILR+  LK
Sbjct  520  VKNPEKYGFNPKELLSDIVDIYLNLSDQPEFVRAVARDGRSYSPELFEKAARILRRKGLK  579

Query  595  SPEELQQWEQLQAKV  609
            SPEE++++E+L  KV
Sbjct  580  SPEEIEKFEELAQKV  594



Lambda      K        H        a         alpha
   0.322    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 806710130


Query= TCONS_00034861

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463080 pfam10408, Ufd2P_core, Ubiquitin elongating factor cor...  657     0.0  


>CDD:463080 pfam10408, Ufd2P_core, Ubiquitin elongating factor core.  This 
is the most conserved part of the core region of Ufd2P ubiquitin 
elongating factor or E4, running from helix alpha-11 
to alpha-38. It consists of 31 helices of variable length connected 
by loops of variable size forming a compact unit; the 
helical packing pattern of the compact unit consists of five 
structural repeats that resemble tandem Armadillo (ARM) repeats. 
This domain is involved in ubiquitination as it binds 
Cdc48p and escorts ubiquitinated proteins from Cdc48p to the 
proteasome for degradation. The core is structurally similar 
to the nuclear transporter protein importin-alpha. The core 
is associated with the U-box at the C-terminus, pfam04564, 
which has ligase activity.
Length=594

 Score = 657 bits (1698),  Expect = 0.0, Method: Composition-based stats.
 Identities = 241/496 (49%), Positives = 321/496 (65%), Gaps = 43/496 (9%)

Query  1    MKDETKINADQHASDAFYSKQE-EGTTNFITEIFFLTVAAHHYGSESLTSKLDQLEKDLR  59
            + DET++NADQ  +D FY ++  EG  NFITE FFLT+AA H G     SK  +L ++L+
Sbjct  137  ISDETRLNADQEEADEFYEQKAKEGEPNFITECFFLTLAALHLGILPAISKYKRLARELK  196

Query  60   HMEGTIRRFELERPRWIHNPVQLRVFEQALRKYKDKLDLGLALKYSLQGVLFDDQWQARS  119
             ++                                      A K + + VL D     RS
Sbjct  197  RLQ--------------------------------------AEKLAYEAVLLDPSLLQRS  218

Query  120  MLFMRYVIVWLLRLVSGVN-FPKEPIKLPLPEQQPEVFKCLPEYFVDDIVSNFKFIMWCM  178
            + F+R+V  WLLR+    + +PK+P+KLPLP + PE FK LPEYF++DIV    F+    
Sbjct  219  LQFLRFVATWLLRVADPKHQYPKKPLKLPLPAEPPEPFKYLPEYFIEDIVDFLLFVTRFA  278

Query  179  PQIITA-TQGDELVMLCITFLESSDYIKNPYLKAGLVSILFRGTWPRPGGARGVLVDLLN  237
            P I+ + +Q DEL+  CI FL S +YIKNP+LKA LV +LF GT PR  G  GVL D+L 
Sbjct  279  PDILESLSQLDELITFCIVFLRSPEYIKNPHLKAKLVEVLFYGTPPRQNGRPGVLGDILE  338

Query  238  SFPFANEYLLHAVMKFYIEAEHTGTHTQFFDKFNIRYEIFQIIKCIWPNTLYRNKLYNQS  297
            S P A ++LL A+MKFYI+ E TG  +QF+DKFNIRY I QI+K +W N  YR +L  ++
Sbjct  339  SHPLALKHLLPALMKFYIDVEKTGASSQFYDKFNIRYNISQILKYLWKNPSYREQLKKEA  398

Query  298  KQNLDFFVRFVNLLLNDVTYVLDESFGAFITIHDTQVELSRNG--NNMDPQERQQKEEHL  355
            K+N DFFVRFVNLLLNDVT++LDES      IH+ Q E++       +  +ERQ++EE L
Sbjct  399  KENEDFFVRFVNLLLNDVTFLLDESLSKLKEIHELQEEMADAAEWEALPEEERQEREEQL  458

Query  356  ASAQRNAKSYMQLTNETVAMLKLFTEALADSFTMPEIVQRLADMLDYNLDAMVGPKSSSL  415
             S +R AKSY+QL NETV +LKLFT+ + + F MPEIV RLA ML+YNLD +VGPK  +L
Sbjct  459  RSLERQAKSYLQLANETVKLLKLFTKEIPEPFLMPEIVDRLAAMLNYNLDQLVGPKCKNL  518

Query  416  RVDNLQEYGFNPRALLSEIVDVYLNLMGKENFILAVARDGRSYKPANFQKAGEILRKWSL  475
            +V N ++YGFNP+ LLS+IVD+YLNL  +  F+ AVARDGRSY P  F+KA  ILR+  L
Sbjct  519  KVKNPEKYGFNPKELLSDIVDIYLNLSDQPEFVRAVARDGRSYSPELFEKAARILRRKGL  578

Query  476  KSPEELQQWEQLQAKV  491
            KSPEE++++E+L  KV
Sbjct  579  KSPEEIEKFEELAQKV  594



Lambda      K        H        a         alpha
   0.322    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0814    0.140     1.90     42.6     43.6 

Effective search space used: 652562446


Query= TCONS_00030250

Length=656
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366771 pfam01717, Meth_synt_2, Cobalamin-independent synthase...  516     0.0  
CDD:400526 pfam08267, Meth_synt_1, Cobalamin-independent synthase...  284     1e-91


>CDD:366771 pfam01717, Meth_synt_2, Cobalamin-independent synthase, Catalytic 
domain.  This is a family of vitamin-B12 independent methionine 
synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine 
methyltransferases, EC:2.1.1.14 from bacteria 
and plants. Plants are the only higher eukaryotes that have 
the required enzymes for methionine synthesis. This enzyme catalyzes 
the last step in the production of methionine by transferring 
a methyl group from 5-methyltetrahydrofolate to homocysteine. 
The aligned region makes up the carboxy region 
of the approximately 750 amino acid protein except in some hypothetical 
archaeal proteins present in the family, where this 
region corresponds to the entire length. This domain contains 
the catalytic residues of the enzyme.
Length=323

 Score = 516 bits (1330),  Expect = 0.0, Method: Composition-based stats.
 Identities = 214/324 (66%), Positives = 247/324 (76%), Gaps = 1/324 (0%)

Query  325  FPTTTIGSFPQTKEIRIQRNKFTKGEITAEEYEKFIEQEIAEVVKIQEELDLDVLVHGEP  384
            FPTTTIGSFPQT EIR  R +F KGEI+ EEYE  I  EI + V+ QE L LDVLVHGEP
Sbjct  1    FPTTTIGSFPQTAEIRAARVEFKKGEISLEEYELRIRGEIEDAVRRQERLGLDVLVHGEP  60

Query  385  ERNDMVQYFGERLTGYVFTTHAWVQSYGSRCVRPPIIVGDISRPAPMTVKESKYAVSISK  444
            ER DMV+YFGE L G+ FT + WVQSYGSRCVRPPII GD+SRPAPMTVK S YA S + 
Sbjct  61   ERGDMVEYFGEALGGFAFTKNGWVQSYGSRCVRPPIIYGDVSRPAPMTVKWSAYAQSTTD  120

Query  445  KPMKGMLTGPITCLRWSFPRDDVHQSVQAQQLALALRDEVIDLEAAGVKVIQVDEPALRE  504
            KP+KGMLTGP+T L WSF RDD  ++  A Q+ALALRDEV DLEAAG+ VIQ+DEPALRE
Sbjct  121  KPVKGMLTGPVTILNWSFVRDDQPRAAIAMQIALALRDEVADLEAAGIAVIQIDEPALRE  180

Query  505  GLPLRAGKEREDYLTWAVRAFRLATSGVSDGTQIHSHFCYSEFQDFFHAIAALDADVLSI  564
            GLPL+   +   YL WAV AFRL T G +D TQIH+H CYS+F D   AIAALDADV++I
Sbjct  181  GLPLKK-LDWAAYLDWAVAAFRLDTCGAADDTQIHTHMCYSDFNDILSAIAALDADVITI  239

Query  565  ENSKSDAKLLKVFVEEAYPRHIGPGVYDIHSPRVPSEQEIKDRIEEMLPYLRPDQLWINP  624
            E S+SD +LL+ F E  Y R IGPGVYDIHSPRVPS +EI   I   L  +  ++LW+NP
Sbjct  240  EASRSDMELLEAFEEWGYGRGIGPGVYDIHSPRVPSMEEIAALIVAALDVVPAERLWVNP  299

Query  625  DCGLKTRQWPETKAALTNMVNAAK  648
            DCGLKTR W E +AAL NMV+AAK
Sbjct  300  DCGLKTRGWEEARAALRNMVDAAK  323


>CDD:400526 pfam08267, Meth_synt_1, Cobalamin-independent synthase, N-terminal 
domain.  The N-terminal domain and C-terminal domains 
of cobalamin-independent synthases together define a catalytic 
cleft in the enzyme. The N-terminal domain is thought to 
bind the substrate, in particular, the negatively charged polyglutamate 
chain. The N-terminal domain is also thought to 
stabilize a loop from the C-terminal domain.
Length=310

 Score = 284 bits (730),  Expect = 1e-91, Method: Composition-based stats.
 Identities = 98/208 (47%), Positives = 141/208 (68%), Gaps = 4/208 (2%)

Query  1    MVKWFDSNYHYVKPTLQENQVFKLASNPKPVAQFLEAKEAGIITRPVILGPVSFLTLAKA  60
            M KWF++NYHY+ P L ++  FKL SN K + ++ EAK  GI T+PV+LGPV+FL L+K 
Sbjct  107  MTKWFNTNYHYIVPELDKDTEFKLNSN-KLLDEYKEAKALGIETKPVLLGPVTFLKLSKG  165

Query  61   DRGQKIDPIDKINDLVPVYVDLLAQLKAAGVEDVQIDEPVLVFDLPAKSKAAFKPVYEKI  120
             +G   D ++ +  L+PVY +LL +L AAG E VQIDEP LV DLP +  AAFK  Y+++
Sbjct  166  -KGGSFDRLELLPKLLPVYKELLKELAAAGAEWVQIDEPALVLDLPPEWLAAFKEAYQEL  224

Query  121  GALGDKAPRIVLATYFGDIVHNIDVLPALHNLHGIHVDLVRNPEQLDAVIAALGPKQVLS  180
             +     P+++LATYFG +   +++L +L  + G+ +DLVR PE L A+       +VLS
Sbjct  225  AS-AKPGPKLLLATYFGSVADALELLASL-PVAGLGLDLVRGPENLAALKKGFPADKVLS  282

Query  181  AGVVDGRNIWKTNFKAAIEKVEHAIQKL  208
            AGV+DGRNIW+ + +AA+E +E   QKL
Sbjct  283  AGVIDGRNIWRADLEAALELLETLAQKL  310



Lambda      K        H        a         alpha
   0.318    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 830306770


Query= TCONS_00030251

Length=1076
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463080 pfam10408, Ufd2P_core, Ubiquitin elongating factor cor...  864     0.0  
CDD:398320 pfam04564, U-box, U-box domain. This domain is related...  107     2e-28


>CDD:463080 pfam10408, Ufd2P_core, Ubiquitin elongating factor core.  This 
is the most conserved part of the core region of Ufd2P ubiquitin 
elongating factor or E4, running from helix alpha-11 
to alpha-38. It consists of 31 helices of variable length connected 
by loops of variable size forming a compact unit; the 
helical packing pattern of the compact unit consists of five 
structural repeats that resemble tandem Armadillo (ARM) repeats. 
This domain is involved in ubiquitination as it binds 
Cdc48p and escorts ubiquitinated proteins from Cdc48p to the 
proteasome for degradation. The core is structurally similar 
to the nuclear transporter protein importin-alpha. The core 
is associated with the U-box at the C-terminus, pfam04564, 
which has ligase activity.
Length=594

 Score = 864 bits (2236),  Expect = 0.0, Method: Composition-based stats.
 Identities = 318/632 (50%), Positives = 420/632 (66%), Gaps = 46/632 (7%)

Query  345  LGPWFRLSPLQ--GNVTMTYFSSPKTRDQSYILNAQRSMRMIQQMLSSDLFDVVNHIIRA  402
            LGP+ RLSPL     V   YFS+PKTR  + I ++Q S+R   + L   LF +VN ++RA
Sbjct  1    LGPFLRLSPLPDDPEVAKKYFSNPKTRSPADIESSQSSLRQELKTLQEQLFQIVNKLLRA  60

Query  403  NKEARDRVLDWFAAALNINHKRRAMQVDPTTVASDGFMFNLTTCLDKLCEPFMDATFTKI  462
            + E+R+RVLDWFA  +N+NHKRR MQVDP TV+SDGFM NLT  L +LCEPF+DATF+KI
Sbjct  61   SPESRERVLDWFAQIINLNHKRRKMQVDPNTVSSDGFMLNLTAVLLRLCEPFLDATFSKI  120

Query  463  DRIDAGYL-HRNPRVDMKDETKINADQHASDAFYSKQE-EGTTNFITEIFFLTVAAHHYG  520
            D+ID  YL  R+ R+D+ DET++NADQ  +D FY ++  EG  NFITE FFLT+AA H G
Sbjct  121  DKIDPDYLLPRSSRIDISDETRLNADQEEADEFYEQKAKEGEPNFITECFFLTLAALHLG  180

Query  521  SESLTSKLDQLEKDLRHMEGTIRRFELERPRWIHNPVQLRVFEQALRKYKDKLDLGLALK  580
                 SK  +L ++L+ ++                                      A K
Sbjct  181  ILPAISKYKRLARELKRLQ--------------------------------------AEK  202

Query  581  YSLQGVLFDDQWQARSMLFMRYVIVWLLRLVSGVN-FPKEPIKLPLPEQQPEVFKCLPEY  639
             + + VL D     RS+ F+R+V  WLLR+    + +PK+P+KLPLP + PE FK LPEY
Sbjct  203  LAYEAVLLDPSLLQRSLQFLRFVATWLLRVADPKHQYPKKPLKLPLPAEPPEPFKYLPEY  262

Query  640  FVDDIVSNFKFIMWCMPQIITA-TQGDELVMLCITFLESSDYIKNPYLKAGLVSILFRGT  698
            F++DIV    F+    P I+ + +Q DEL+  CI FL S +YIKNP+LKA LV +LF GT
Sbjct  263  FIEDIVDFLLFVTRFAPDILESLSQLDELITFCIVFLRSPEYIKNPHLKAKLVEVLFYGT  322

Query  699  WPRPGGARGVLVDLLNSFPFANEYLLHAVMKFYIEAEHTGTHTQFFDKFNIRYEIFQIIK  758
             PR  G  GVL D+L S P A ++LL A+MKFYI+ E TG  +QF+DKFNIRY I QI+K
Sbjct  323  PPRQNGRPGVLGDILESHPLALKHLLPALMKFYIDVEKTGASSQFYDKFNIRYNISQILK  382

Query  759  CIWPNTLYRNKLYNQSKQNLDFFVRFVNLLLNDVTYVLDESFGAFITIHDTQVELSRNG-  817
             +W N  YR +L  ++K+N DFFVRFVNLLLNDVT++LDES      IH+ Q E++    
Sbjct  383  YLWKNPSYREQLKKEAKENEDFFVRFVNLLLNDVTFLLDESLSKLKEIHELQEEMADAAE  442

Query  818  -NNMDPQERQQKEEHLASAQRNAKSYMQLTNETVAMLKLFTEALADSFTMPEIVQRLADM  876
               +  +ERQ++EE L S +R AKSY+QL NETV +LKLFT+ + + F MPEIV RLA M
Sbjct  443  WEALPEEERQEREEQLRSLERQAKSYLQLANETVKLLKLFTKEIPEPFLMPEIVDRLAAM  502

Query  877  LDYNLDAMVGPKSSSLRVDNLQEYGFNPRALLSEIVDVYLNLMGKENFILAVARDGRSYK  936
            L+YNLD +VGPK  +L+V N ++YGFNP+ LLS+IVD+YLNL  +  F+ AVARDGRSY 
Sbjct  503  LNYNLDQLVGPKCKNLKVKNPEKYGFNPKELLSDIVDIYLNLSDQPEFVRAVARDGRSYS  562

Query  937  PANFQKAGEILRKWSLKSPEELQQWEQLQAKV  968
            P  F+KA  ILR+  LKSPEE++++E+L  KV
Sbjct  563  PELFEKAARILRRKGLKSPEEIEKFEELAQKV  594


>CDD:398320 pfam04564, U-box, U-box domain.  This domain is related to the 
Ring finger pfam00097 but lacks the zinc binding residues.
Length=73

 Score = 107 bits (269),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 42/72 (58%), Positives = 53/72 (74%), Gaps = 2/72 (3%)

Query  985   IPDEFLDPLIYTLMEDPVILPGSKVSMDRSTLRSHLLS-DPHDPFNRAPLKMEDVTPDTE  1043
             IPDEFLDP+ + LM DPVILP S ++ DRST+  HLLS DP DPF R PL  + + P+ E
Sbjct  1     IPDEFLDPITFELMTDPVILP-SGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLE  59

Query  1044  LKARIDAFKAER  1055
             LKA+IDA+  E+
Sbjct  60    LKAKIDAWLEEK  71



Lambda      K        H        a         alpha
   0.319    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1387558480


Query= TCONS_00030249

Length=656
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366771 pfam01717, Meth_synt_2, Cobalamin-independent synthase...  516     0.0  
CDD:400526 pfam08267, Meth_synt_1, Cobalamin-independent synthase...  284     1e-91


>CDD:366771 pfam01717, Meth_synt_2, Cobalamin-independent synthase, Catalytic 
domain.  This is a family of vitamin-B12 independent methionine 
synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine 
methyltransferases, EC:2.1.1.14 from bacteria 
and plants. Plants are the only higher eukaryotes that have 
the required enzymes for methionine synthesis. This enzyme catalyzes 
the last step in the production of methionine by transferring 
a methyl group from 5-methyltetrahydrofolate to homocysteine. 
The aligned region makes up the carboxy region 
of the approximately 750 amino acid protein except in some hypothetical 
archaeal proteins present in the family, where this 
region corresponds to the entire length. This domain contains 
the catalytic residues of the enzyme.
Length=323

 Score = 516 bits (1330),  Expect = 0.0, Method: Composition-based stats.
 Identities = 214/324 (66%), Positives = 247/324 (76%), Gaps = 1/324 (0%)

Query  325  FPTTTIGSFPQTKEIRIQRNKFTKGEITAEEYEKFIEQEIAEVVKIQEELDLDVLVHGEP  384
            FPTTTIGSFPQT EIR  R +F KGEI+ EEYE  I  EI + V+ QE L LDVLVHGEP
Sbjct  1    FPTTTIGSFPQTAEIRAARVEFKKGEISLEEYELRIRGEIEDAVRRQERLGLDVLVHGEP  60

Query  385  ERNDMVQYFGERLTGYVFTTHAWVQSYGSRCVRPPIIVGDISRPAPMTVKESKYAVSISK  444
            ER DMV+YFGE L G+ FT + WVQSYGSRCVRPPII GD+SRPAPMTVK S YA S + 
Sbjct  61   ERGDMVEYFGEALGGFAFTKNGWVQSYGSRCVRPPIIYGDVSRPAPMTVKWSAYAQSTTD  120

Query  445  KPMKGMLTGPITCLRWSFPRDDVHQSVQAQQLALALRDEVIDLEAAGVKVIQVDEPALRE  504
            KP+KGMLTGP+T L WSF RDD  ++  A Q+ALALRDEV DLEAAG+ VIQ+DEPALRE
Sbjct  121  KPVKGMLTGPVTILNWSFVRDDQPRAAIAMQIALALRDEVADLEAAGIAVIQIDEPALRE  180

Query  505  GLPLRAGKEREDYLTWAVRAFRLATSGVSDGTQIHSHFCYSEFQDFFHAIAALDADVLSI  564
            GLPL+   +   YL WAV AFRL T G +D TQIH+H CYS+F D   AIAALDADV++I
Sbjct  181  GLPLKK-LDWAAYLDWAVAAFRLDTCGAADDTQIHTHMCYSDFNDILSAIAALDADVITI  239

Query  565  ENSKSDAKLLKVFVEEAYPRHIGPGVYDIHSPRVPSEQEIKDRIEEMLPYLRPDQLWINP  624
            E S+SD +LL+ F E  Y R IGPGVYDIHSPRVPS +EI   I   L  +  ++LW+NP
Sbjct  240  EASRSDMELLEAFEEWGYGRGIGPGVYDIHSPRVPSMEEIAALIVAALDVVPAERLWVNP  299

Query  625  DCGLKTRQWPETKAALTNMVNAAK  648
            DCGLKTR W E +AAL NMV+AAK
Sbjct  300  DCGLKTRGWEEARAALRNMVDAAK  323


>CDD:400526 pfam08267, Meth_synt_1, Cobalamin-independent synthase, N-terminal 
domain.  The N-terminal domain and C-terminal domains 
of cobalamin-independent synthases together define a catalytic 
cleft in the enzyme. The N-terminal domain is thought to 
bind the substrate, in particular, the negatively charged polyglutamate 
chain. The N-terminal domain is also thought to 
stabilize a loop from the C-terminal domain.
Length=310

 Score = 284 bits (730),  Expect = 1e-91, Method: Composition-based stats.
 Identities = 98/208 (47%), Positives = 141/208 (68%), Gaps = 4/208 (2%)

Query  1    MVKWFDSNYHYVKPTLQENQVFKLASNPKPVAQFLEAKEAGIITRPVILGPVSFLTLAKA  60
            M KWF++NYHY+ P L ++  FKL SN K + ++ EAK  GI T+PV+LGPV+FL L+K 
Sbjct  107  MTKWFNTNYHYIVPELDKDTEFKLNSN-KLLDEYKEAKALGIETKPVLLGPVTFLKLSKG  165

Query  61   DRGQKIDPIDKINDLVPVYVDLLAQLKAAGVEDVQIDEPVLVFDLPAKSKAAFKPVYEKI  120
             +G   D ++ +  L+PVY +LL +L AAG E VQIDEP LV DLP +  AAFK  Y+++
Sbjct  166  -KGGSFDRLELLPKLLPVYKELLKELAAAGAEWVQIDEPALVLDLPPEWLAAFKEAYQEL  224

Query  121  GALGDKAPRIVLATYFGDIVHNIDVLPALHNLHGIHVDLVRNPEQLDAVIAALGPKQVLS  180
             +     P+++LATYFG +   +++L +L  + G+ +DLVR PE L A+       +VLS
Sbjct  225  AS-AKPGPKLLLATYFGSVADALELLASL-PVAGLGLDLVRGPENLAALKKGFPADKVLS  282

Query  181  AGVVDGRNIWKTNFKAAIEKVEHAIQKL  208
            AGV+DGRNIW+ + +AA+E +E   QKL
Sbjct  283  AGVIDGRNIWRADLEAALELLETLAQKL  310



Lambda      K        H        a         alpha
   0.318    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 830306770


Query= TCONS_00034862

Length=717
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463080 pfam10408, Ufd2P_core, Ubiquitin elongating factor cor...  833     0.0  
CDD:398320 pfam04564, U-box, U-box domain. This domain is related...  108     3e-29


>CDD:463080 pfam10408, Ufd2P_core, Ubiquitin elongating factor core.  This 
is the most conserved part of the core region of Ufd2P ubiquitin 
elongating factor or E4, running from helix alpha-11 
to alpha-38. It consists of 31 helices of variable length connected 
by loops of variable size forming a compact unit; the 
helical packing pattern of the compact unit consists of five 
structural repeats that resemble tandem Armadillo (ARM) repeats. 
This domain is involved in ubiquitination as it binds 
Cdc48p and escorts ubiquitinated proteins from Cdc48p to the 
proteasome for degradation. The core is structurally similar 
to the nuclear transporter protein importin-alpha. The core 
is associated with the U-box at the C-terminus, pfam04564, 
which has ligase activity.
Length=594

 Score = 833 bits (2155),  Expect = 0.0, Method: Composition-based stats.
 Identities = 309/615 (50%), Positives = 410/615 (67%), Gaps = 44/615 (7%)

Query  1    MTYFSSPKTRDQSYILNAQRSMRMIQQMLSSDLFDVVNHIIRANKEARDRVLDWFAAALN  60
              YFS+PKTR  + I ++Q S+R   + L   LF +VN ++RA+ E+R+RVLDWFA  +N
Sbjct  18   KKYFSNPKTRSPADIESSQSSLRQELKTLQEQLFQIVNKLLRASPESRERVLDWFAQIIN  77

Query  61   INHKRRAMQVDPTTVASDGFMFNLTTCLDKLCEPFMDATFTKIDRIDAGYL-HRNPRVDM  119
            +NHKRR MQVDP TV+SDGFM NLT  L +LCEPF+DATF+KID+ID  YL  R+ R+D+
Sbjct  78   LNHKRRKMQVDPNTVSSDGFMLNLTAVLLRLCEPFLDATFSKIDKIDPDYLLPRSSRIDI  137

Query  120  KDETKINADQHASDAFYSKQE-EGTTNFITEIFFLTVAAHHYGSESLTSKLDQLEKDLRH  178
             DET++NADQ  +D FY ++  EG  NFITE FFLT+AA H G     SK  +L ++L+ 
Sbjct  138  SDETRLNADQEEADEFYEQKAKEGEPNFITECFFLTLAALHLGILPAISKYKRLARELKR  197

Query  179  MEGTIRRFELERPRWIHNPVQLRVFEQALRKYKDKLDLGLALKYSLQGVLFDDQWQARSM  238
            ++                                      A K + + VL D     RS+
Sbjct  198  LQ--------------------------------------AEKLAYEAVLLDPSLLQRSL  219

Query  239  LFMRYVIVWLLRLVSGVN-FPKEPIKLPLPEQQPEVFKCLPEYFVDDIVSNFKFIMWCMP  297
             F+R+V  WLLR+    + +PK+P+KLPLP + PE FK LPEYF++DIV    F+    P
Sbjct  220  QFLRFVATWLLRVADPKHQYPKKPLKLPLPAEPPEPFKYLPEYFIEDIVDFLLFVTRFAP  279

Query  298  QIITA-TQGDELVMLCITFLESSDYIKNPYLKAGLVSILFRGTWPRPGGARGVLVDLLNS  356
             I+ + +Q DEL+  CI FL S +YIKNP+LKA LV +LF GT PR  G  GVL D+L S
Sbjct  280  DILESLSQLDELITFCIVFLRSPEYIKNPHLKAKLVEVLFYGTPPRQNGRPGVLGDILES  339

Query  357  FPFANEYLLHAVMKFYIEAEHTGTHTQFFDKFNIRYEIFQIIKCIWPNTLYRNKLYNQSK  416
             P A ++LL A+MKFYI+ E TG  +QF+DKFNIRY I QI+K +W N  YR +L  ++K
Sbjct  340  HPLALKHLLPALMKFYIDVEKTGASSQFYDKFNIRYNISQILKYLWKNPSYREQLKKEAK  399

Query  417  QNLDFFVRFVNLLLNDVTYVLDESFGAFITIHDTQVELSRNG--NNMDPQERQQKEEHLA  474
            +N DFFVRFVNLLLNDVT++LDES      IH+ Q E++       +  +ERQ++EE L 
Sbjct  400  ENEDFFVRFVNLLLNDVTFLLDESLSKLKEIHELQEEMADAAEWEALPEEERQEREEQLR  459

Query  475  SAQRNAKSYMQLTNETVAMLKLFTEALADSFTMPEIVQRLADMLDYNLDAMVGPKSSSLR  534
            S +R AKSY+QL NETV +LKLFT+ + + F MPEIV RLA ML+YNLD +VGPK  +L+
Sbjct  460  SLERQAKSYLQLANETVKLLKLFTKEIPEPFLMPEIVDRLAAMLNYNLDQLVGPKCKNLK  519

Query  535  VDNLQEYGFNPRALLSEIVDVYLNLMGKENFILAVARDGRSYKPANFQKAGEILRKWSLK  594
            V N ++YGFNP+ LLS+IVD+YLNL  +  F+ AVARDGRSY P  F+KA  ILR+  LK
Sbjct  520  VKNPEKYGFNPKELLSDIVDIYLNLSDQPEFVRAVARDGRSYSPELFEKAARILRRKGLK  579

Query  595  SPEELQQWEQLQAKV  609
            SPEE++++E+L  KV
Sbjct  580  SPEEIEKFEELAQKV  594


>CDD:398320 pfam04564, U-box, U-box domain.  This domain is related to the 
Ring finger pfam00097 but lacks the zinc binding residues.
Length=73

 Score = 108 bits (273),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 42/72 (58%), Positives = 53/72 (74%), Gaps = 2/72 (3%)

Query  626  IPDEFLDPLIYTLMEDPVILPGSKVSMDRSTLRSHLLS-DPHDPFNRAPLKMEDVTPDTE  684
            IPDEFLDP+ + LM DPVILP S ++ DRST+  HLLS DP DPF R PL  + + P+ E
Sbjct  1    IPDEFLDPITFELMTDPVILP-SGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLE  59

Query  685  LKARIDAFKAER  696
            LKA+IDA+  E+
Sbjct  60   LKAKIDAWLEEK  71



Lambda      K        H        a         alpha
   0.321    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906559696


Query= TCONS_00030252

Length=771
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463080 pfam10408, Ufd2P_core, Ubiquitin elongating factor cor...  851     0.0  


>CDD:463080 pfam10408, Ufd2P_core, Ubiquitin elongating factor core.  This 
is the most conserved part of the core region of Ufd2P ubiquitin 
elongating factor or E4, running from helix alpha-11 
to alpha-38. It consists of 31 helices of variable length connected 
by loops of variable size forming a compact unit; the 
helical packing pattern of the compact unit consists of five 
structural repeats that resemble tandem Armadillo (ARM) repeats. 
This domain is involved in ubiquitination as it binds 
Cdc48p and escorts ubiquitinated proteins from Cdc48p to the 
proteasome for degradation. The core is structurally similar 
to the nuclear transporter protein importin-alpha. The core 
is associated with the U-box at the C-terminus, pfam04564, 
which has ligase activity.
Length=594

 Score = 851 bits (2202),  Expect = 0.0, Method: Composition-based stats.
 Identities = 318/632 (50%), Positives = 420/632 (66%), Gaps = 46/632 (7%)

Query  117  LGPWFRLSPLQ--GNVTMTYFSSPKTRDQSYILNAQRSMRMIQQMLSSDLFDVVNHIIRA  174
            LGP+ RLSPL     V   YFS+PKTR  + I ++Q S+R   + L   LF +VN ++RA
Sbjct  1    LGPFLRLSPLPDDPEVAKKYFSNPKTRSPADIESSQSSLRQELKTLQEQLFQIVNKLLRA  60

Query  175  NKEARDRVLDWFAAALNINHKRRAMQVDPTTVASDGFMFNLTTCLDKLCEPFMDATFTKI  234
            + E+R+RVLDWFA  +N+NHKRR MQVDP TV+SDGFM NLT  L +LCEPF+DATF+KI
Sbjct  61   SPESRERVLDWFAQIINLNHKRRKMQVDPNTVSSDGFMLNLTAVLLRLCEPFLDATFSKI  120

Query  235  DRIDAGYL-HRNPRVDMKDETKINADQHASDAFYSKQE-EGTTNFITEIFFLTVAAHHYG  292
            D+ID  YL  R+ R+D+ DET++NADQ  +D FY ++  EG  NFITE FFLT+AA H G
Sbjct  121  DKIDPDYLLPRSSRIDISDETRLNADQEEADEFYEQKAKEGEPNFITECFFLTLAALHLG  180

Query  293  SESLTSKLDQLEKDLRHMEGTIRRFELERPRWIHNPVQLRVFEQALRKYKDKLDLGLALK  352
                 SK  +L ++L+ ++                                      A K
Sbjct  181  ILPAISKYKRLARELKRLQ--------------------------------------AEK  202

Query  353  YSLQGVLFDDQWQARSMLFMRYVIVWLLRLVSGVN-FPKEPIKLPLPEQQPEVFKCLPEY  411
             + + VL D     RS+ F+R+V  WLLR+    + +PK+P+KLPLP + PE FK LPEY
Sbjct  203  LAYEAVLLDPSLLQRSLQFLRFVATWLLRVADPKHQYPKKPLKLPLPAEPPEPFKYLPEY  262

Query  412  FVDDIVSNFKFIMWCMPQIITA-TQGDELVMLCITFLESSDYIKNPYLKAGLVSILFRGT  470
            F++DIV    F+    P I+ + +Q DEL+  CI FL S +YIKNP+LKA LV +LF GT
Sbjct  263  FIEDIVDFLLFVTRFAPDILESLSQLDELITFCIVFLRSPEYIKNPHLKAKLVEVLFYGT  322

Query  471  WPRPGGARGVLVDLLNSFPFANEYLLHAVMKFYIEAEHTGTHTQFFDKFNIRYEIFQIIK  530
             PR  G  GVL D+L S P A ++LL A+MKFYI+ E TG  +QF+DKFNIRY I QI+K
Sbjct  323  PPRQNGRPGVLGDILESHPLALKHLLPALMKFYIDVEKTGASSQFYDKFNIRYNISQILK  382

Query  531  CIWPNTLYRNKLYNQSKQNLDFFVRFVNLLLNDVTYVLDESFGAFITIHDTQVELSRNG-  589
             +W N  YR +L  ++K+N DFFVRFVNLLLNDVT++LDES      IH+ Q E++    
Sbjct  383  YLWKNPSYREQLKKEAKENEDFFVRFVNLLLNDVTFLLDESLSKLKEIHELQEEMADAAE  442

Query  590  -NNMDPQERQQKEEHLASAQRNAKSYMQLTNETVAMLKLFTEALADSFTMPEIVQRLADM  648
               +  +ERQ++EE L S +R AKSY+QL NETV +LKLFT+ + + F MPEIV RLA M
Sbjct  443  WEALPEEERQEREEQLRSLERQAKSYLQLANETVKLLKLFTKEIPEPFLMPEIVDRLAAM  502

Query  649  LDYNLDAMVGPKSSSLRVDNLQEYGFNPRALLSEIVDVYLNLMGKENFILAVARDGRSYK  708
            L+YNLD +VGPK  +L+V N ++YGFNP+ LLS+IVD+YLNL  +  F+ AVARDGRSY 
Sbjct  503  LNYNLDQLVGPKCKNLKVKNPEKYGFNPKELLSDIVDIYLNLSDQPEFVRAVARDGRSYS  562

Query  709  PANFQKAGEILRKWSLKSPEELQQWEQLQAKV  740
            P  F+KA  ILR+  LKSPEE++++E+L  KV
Sbjct  563  PELFEKAARILRRKGLKSPEEIEKFEELAQKV  594



Lambda      K        H        a         alpha
   0.322    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 985137904


Query= TCONS_00034863

Length=852
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463080 pfam10408, Ufd2P_core, Ubiquitin elongating factor cor...  854     0.0  
CDD:398320 pfam04564, U-box, U-box domain. This domain is related...  108     6e-29


>CDD:463080 pfam10408, Ufd2P_core, Ubiquitin elongating factor core.  This 
is the most conserved part of the core region of Ufd2P ubiquitin 
elongating factor or E4, running from helix alpha-11 
to alpha-38. It consists of 31 helices of variable length connected 
by loops of variable size forming a compact unit; the 
helical packing pattern of the compact unit consists of five 
structural repeats that resemble tandem Armadillo (ARM) repeats. 
This domain is involved in ubiquitination as it binds 
Cdc48p and escorts ubiquitinated proteins from Cdc48p to the 
proteasome for degradation. The core is structurally similar 
to the nuclear transporter protein importin-alpha. The core 
is associated with the U-box at the C-terminus, pfam04564, 
which has ligase activity.
Length=594

 Score = 854 bits (2209),  Expect = 0.0, Method: Composition-based stats.
 Identities = 318/632 (50%), Positives = 420/632 (66%), Gaps = 46/632 (7%)

Query  121  LGPWFRLSPLQ--GNVTMTYFSSPKTRDQSYILNAQRSMRMIQQMLSSDLFDVVNHIIRA  178
            LGP+ RLSPL     V   YFS+PKTR  + I ++Q S+R   + L   LF +VN ++RA
Sbjct  1    LGPFLRLSPLPDDPEVAKKYFSNPKTRSPADIESSQSSLRQELKTLQEQLFQIVNKLLRA  60

Query  179  NKEARDRVLDWFAAALNINHKRRAMQVDPTTVASDGFMFNLTTCLDKLCEPFMDATFTKI  238
            + E+R+RVLDWFA  +N+NHKRR MQVDP TV+SDGFM NLT  L +LCEPF+DATF+KI
Sbjct  61   SPESRERVLDWFAQIINLNHKRRKMQVDPNTVSSDGFMLNLTAVLLRLCEPFLDATFSKI  120

Query  239  DRIDAGYL-HRNPRVDMKDETKINADQHASDAFYSKQE-EGTTNFITEIFFLTVAAHHYG  296
            D+ID  YL  R+ R+D+ DET++NADQ  +D FY ++  EG  NFITE FFLT+AA H G
Sbjct  121  DKIDPDYLLPRSSRIDISDETRLNADQEEADEFYEQKAKEGEPNFITECFFLTLAALHLG  180

Query  297  SESLTSKLDQLEKDLRHMEGTIRRFELERPRWIHNPVQLRVFEQALRKYKDKLDLGLALK  356
                 SK  +L ++L+ ++                                      A K
Sbjct  181  ILPAISKYKRLARELKRLQ--------------------------------------AEK  202

Query  357  YSLQGVLFDDQWQARSMLFMRYVIVWLLRLVSGVN-FPKEPIKLPLPEQQPEVFKCLPEY  415
             + + VL D     RS+ F+R+V  WLLR+    + +PK+P+KLPLP + PE FK LPEY
Sbjct  203  LAYEAVLLDPSLLQRSLQFLRFVATWLLRVADPKHQYPKKPLKLPLPAEPPEPFKYLPEY  262

Query  416  FVDDIVSNFKFIMWCMPQIITA-TQGDELVMLCITFLESSDYIKNPYLKAGLVSILFRGT  474
            F++DIV    F+    P I+ + +Q DEL+  CI FL S +YIKNP+LKA LV +LF GT
Sbjct  263  FIEDIVDFLLFVTRFAPDILESLSQLDELITFCIVFLRSPEYIKNPHLKAKLVEVLFYGT  322

Query  475  WPRPGGARGVLVDLLNSFPFANEYLLHAVMKFYIEAEHTGTHTQFFDKFNIRYEIFQIIK  534
             PR  G  GVL D+L S P A ++LL A+MKFYI+ E TG  +QF+DKFNIRY I QI+K
Sbjct  323  PPRQNGRPGVLGDILESHPLALKHLLPALMKFYIDVEKTGASSQFYDKFNIRYNISQILK  382

Query  535  CIWPNTLYRNKLYNQSKQNLDFFVRFVNLLLNDVTYVLDESFGAFITIHDTQVELSRNG-  593
             +W N  YR +L  ++K+N DFFVRFVNLLLNDVT++LDES      IH+ Q E++    
Sbjct  383  YLWKNPSYREQLKKEAKENEDFFVRFVNLLLNDVTFLLDESLSKLKEIHELQEEMADAAE  442

Query  594  -NNMDPQERQQKEEHLASAQRNAKSYMQLTNETVAMLKLFTEALADSFTMPEIVQRLADM  652
               +  +ERQ++EE L S +R AKSY+QL NETV +LKLFT+ + + F MPEIV RLA M
Sbjct  443  WEALPEEERQEREEQLRSLERQAKSYLQLANETVKLLKLFTKEIPEPFLMPEIVDRLAAM  502

Query  653  LDYNLDAMVGPKSSSLRVDNLQEYGFNPRALLSEIVDVYLNLMGKENFILAVARDGRSYK  712
            L+YNLD +VGPK  +L+V N ++YGFNP+ LLS+IVD+YLNL  +  F+ AVARDGRSY 
Sbjct  503  LNYNLDQLVGPKCKNLKVKNPEKYGFNPKELLSDIVDIYLNLSDQPEFVRAVARDGRSYS  562

Query  713  PANFQKAGEILRKWSLKSPEELQQWEQLQAKV  744
            P  F+KA  ILR+  LKSPEE++++E+L  KV
Sbjct  563  PELFEKAARILRRKGLKSPEEIEKFEELAQKV  594


>CDD:398320 pfam04564, U-box, U-box domain.  This domain is related to the 
Ring finger pfam00097 but lacks the zinc binding residues.
Length=73

 Score = 108 bits (271),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 42/72 (58%), Positives = 53/72 (74%), Gaps = 2/72 (3%)

Query  761  IPDEFLDPLIYTLMEDPVILPGSKVSMDRSTLRSHLLS-DPHDPFNRAPLKMEDVTPDTE  819
            IPDEFLDP+ + LM DPVILP S ++ DRST+  HLLS DP DPF R PL  + + P+ E
Sbjct  1    IPDEFLDPITFELMTDPVILP-SGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLE  59

Query  820  LKARIDAFKAER  831
            LKA+IDA+  E+
Sbjct  60   LKAKIDAWLEEK  71



Lambda      K        H        a         alpha
   0.321    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1086684098


Query= TCONS_00030253

Length=1088
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463080 pfam10408, Ufd2P_core, Ubiquitin elongating factor cor...  863     0.0  
CDD:398320 pfam04564, U-box, U-box domain. This domain is related...  100     3e-26


>CDD:463080 pfam10408, Ufd2P_core, Ubiquitin elongating factor core.  This 
is the most conserved part of the core region of Ufd2P ubiquitin 
elongating factor or E4, running from helix alpha-11 
to alpha-38. It consists of 31 helices of variable length connected 
by loops of variable size forming a compact unit; the 
helical packing pattern of the compact unit consists of five 
structural repeats that resemble tandem Armadillo (ARM) repeats. 
This domain is involved in ubiquitination as it binds 
Cdc48p and escorts ubiquitinated proteins from Cdc48p to the 
proteasome for degradation. The core is structurally similar 
to the nuclear transporter protein importin-alpha. The core 
is associated with the U-box at the C-terminus, pfam04564, 
which has ligase activity.
Length=594

 Score = 863 bits (2233),  Expect = 0.0, Method: Composition-based stats.
 Identities = 318/632 (50%), Positives = 420/632 (66%), Gaps = 46/632 (7%)

Query  351  LGPWFRLSPLQ--GNVTMTYFSSPKTRDQSYILNAQRSMRMIQQMLSSDLFDVVNHIIRA  408
            LGP+ RLSPL     V   YFS+PKTR  + I ++Q S+R   + L   LF +VN ++RA
Sbjct  1    LGPFLRLSPLPDDPEVAKKYFSNPKTRSPADIESSQSSLRQELKTLQEQLFQIVNKLLRA  60

Query  409  NKEARDRVLDWFAAALNINHKRRAMQVDPTTVASDGFMFNLTTCLDKLCEPFMDATFTKI  468
            + E+R+RVLDWFA  +N+NHKRR MQVDP TV+SDGFM NLT  L +LCEPF+DATF+KI
Sbjct  61   SPESRERVLDWFAQIINLNHKRRKMQVDPNTVSSDGFMLNLTAVLLRLCEPFLDATFSKI  120

Query  469  DRIDAGYL-HRNPRVDMKDETKINADQHASDAFYSKQE-EGTTNFITEIFFLTVAAHHYG  526
            D+ID  YL  R+ R+D+ DET++NADQ  +D FY ++  EG  NFITE FFLT+AA H G
Sbjct  121  DKIDPDYLLPRSSRIDISDETRLNADQEEADEFYEQKAKEGEPNFITECFFLTLAALHLG  180

Query  527  SESLTSKLDQLEKDLRHMEGTIRRFELERPRWIHNPVQLRVFEQALRKYKDKLDLGLALK  586
                 SK  +L ++L+ ++                                      A K
Sbjct  181  ILPAISKYKRLARELKRLQ--------------------------------------AEK  202

Query  587  YSLQGVLFDDQWQARSMLFMRYVIVWLLRLVSGVN-FPKEPIKLPLPEQQPEVFKCLPEY  645
             + + VL D     RS+ F+R+V  WLLR+    + +PK+P+KLPLP + PE FK LPEY
Sbjct  203  LAYEAVLLDPSLLQRSLQFLRFVATWLLRVADPKHQYPKKPLKLPLPAEPPEPFKYLPEY  262

Query  646  FVDDIVSNFKFIMWCMPQIITA-TQGDELVMLCITFLESSDYIKNPYLKAGLVSILFRGT  704
            F++DIV    F+    P I+ + +Q DEL+  CI FL S +YIKNP+LKA LV +LF GT
Sbjct  263  FIEDIVDFLLFVTRFAPDILESLSQLDELITFCIVFLRSPEYIKNPHLKAKLVEVLFYGT  322

Query  705  WPRPGGARGVLVDLLNSFPFANEYLLHAVMKFYIEAEHTGTHTQFFDKFNIRYEIFQIIK  764
             PR  G  GVL D+L S P A ++LL A+MKFYI+ E TG  +QF+DKFNIRY I QI+K
Sbjct  323  PPRQNGRPGVLGDILESHPLALKHLLPALMKFYIDVEKTGASSQFYDKFNIRYNISQILK  382

Query  765  CIWPNTLYRNKLYNQSKQNLDFFVRFVNLLLNDVTYVLDESFGAFITIHDTQVELSRNG-  823
             +W N  YR +L  ++K+N DFFVRFVNLLLNDVT++LDES      IH+ Q E++    
Sbjct  383  YLWKNPSYREQLKKEAKENEDFFVRFVNLLLNDVTFLLDESLSKLKEIHELQEEMADAAE  442

Query  824  -NNMDPQERQQKEEHLASAQRNAKSYMQLTNETVAMLKLFTEALADSFTMPEIVQRLADM  882
               +  +ERQ++EE L S +R AKSY+QL NETV +LKLFT+ + + F MPEIV RLA M
Sbjct  443  WEALPEEERQEREEQLRSLERQAKSYLQLANETVKLLKLFTKEIPEPFLMPEIVDRLAAM  502

Query  883  LDYNLDAMVGPKSSSLRVDNLQEYGFNPRALLSEIVDVYLNLMGKENFILAVARDGRSYK  942
            L+YNLD +VGPK  +L+V N ++YGFNP+ LLS+IVD+YLNL  +  F+ AVARDGRSY 
Sbjct  503  LNYNLDQLVGPKCKNLKVKNPEKYGFNPKELLSDIVDIYLNLSDQPEFVRAVARDGRSYS  562

Query  943  PANFQKAGEILRKWSLKSPEELQQWEQLQAKV  974
            P  F+KA  ILR+  LKSPEE++++E+L  KV
Sbjct  563  PELFEKAARILRRKGLKSPEEIEKFEELAQKV  594


>CDD:398320 pfam04564, U-box, U-box domain.  This domain is related to the 
Ring finger pfam00097 but lacks the zinc binding residues.
Length=73

 Score = 100 bits (252),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 42/78 (54%), Positives = 53/78 (68%), Gaps = 8/78 (10%)

Query  991   IPDEFLADGFSLDPLIYTLMEDPVILPGSKVSMDRSTLRSHLLS-DPHDPFNRAPLKMED  1049
             IPDEFL      DP+ + LM DPVILP S ++ DRST+  HLLS DP DPF R PL  + 
Sbjct  1     IPDEFL------DPITFELMTDPVILP-SGITYDRSTIERHLLSVDPTDPFTREPLTHDQ  53

Query  1050  VTPDTELKARIDAFKAER  1067
             + P+ ELKA+IDA+  E+
Sbjct  54    LIPNLELKAKIDAWLEEK  71



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1383671858


Query= TCONS_00030254

Length=700
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366771 pfam01717, Meth_synt_2, Cobalamin-independent synthase...  516     0.0  
CDD:400526 pfam08267, Meth_synt_1, Cobalamin-independent synthase...  288     1e-92


>CDD:366771 pfam01717, Meth_synt_2, Cobalamin-independent synthase, Catalytic 
domain.  This is a family of vitamin-B12 independent methionine 
synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine 
methyltransferases, EC:2.1.1.14 from bacteria 
and plants. Plants are the only higher eukaryotes that have 
the required enzymes for methionine synthesis. This enzyme catalyzes 
the last step in the production of methionine by transferring 
a methyl group from 5-methyltetrahydrofolate to homocysteine. 
The aligned region makes up the carboxy region 
of the approximately 750 amino acid protein except in some hypothetical 
archaeal proteins present in the family, where this 
region corresponds to the entire length. This domain contains 
the catalytic residues of the enzyme.
Length=323

 Score = 516 bits (1330),  Expect = 0.0, Method: Composition-based stats.
 Identities = 214/324 (66%), Positives = 247/324 (76%), Gaps = 1/324 (0%)

Query  369  FPTTTIGSFPQTKEIRIQRNKFTKGEITAEEYEKFIEQEIAEVVKIQEELDLDVLVHGEP  428
            FPTTTIGSFPQT EIR  R +F KGEI+ EEYE  I  EI + V+ QE L LDVLVHGEP
Sbjct  1    FPTTTIGSFPQTAEIRAARVEFKKGEISLEEYELRIRGEIEDAVRRQERLGLDVLVHGEP  60

Query  429  ERNDMVQYFGERLTGYVFTTHAWVQSYGSRCVRPPIIVGDISRPAPMTVKESKYAVSISK  488
            ER DMV+YFGE L G+ FT + WVQSYGSRCVRPPII GD+SRPAPMTVK S YA S + 
Sbjct  61   ERGDMVEYFGEALGGFAFTKNGWVQSYGSRCVRPPIIYGDVSRPAPMTVKWSAYAQSTTD  120

Query  489  KPMKGMLTGPITCLRWSFPRDDVHQSVQAQQLALALRDEVIDLEAAGVKVIQVDEPALRE  548
            KP+KGMLTGP+T L WSF RDD  ++  A Q+ALALRDEV DLEAAG+ VIQ+DEPALRE
Sbjct  121  KPVKGMLTGPVTILNWSFVRDDQPRAAIAMQIALALRDEVADLEAAGIAVIQIDEPALRE  180

Query  549  GLPLRAGKEREDYLTWAVRAFRLATSGVSDGTQIHSHFCYSEFQDFFHAIAALDADVLSI  608
            GLPL+   +   YL WAV AFRL T G +D TQIH+H CYS+F D   AIAALDADV++I
Sbjct  181  GLPLKK-LDWAAYLDWAVAAFRLDTCGAADDTQIHTHMCYSDFNDILSAIAALDADVITI  239

Query  609  ENSKSDAKLLKVFVEEAYPRHIGPGVYDIHSPRVPSEQEIKDRIEEMLPYLRPDQLWINP  668
            E S+SD +LL+ F E  Y R IGPGVYDIHSPRVPS +EI   I   L  +  ++LW+NP
Sbjct  240  EASRSDMELLEAFEEWGYGRGIGPGVYDIHSPRVPSMEEIAALIVAALDVVPAERLWVNP  299

Query  669  DCGLKTRQWPETKAALTNMVNAAK  692
            DCGLKTR W E +AAL NMV+AAK
Sbjct  300  DCGLKTRGWEEARAALRNMVDAAK  323


>CDD:400526 pfam08267, Meth_synt_1, Cobalamin-independent synthase, N-terminal 
domain.  The N-terminal domain and C-terminal domains 
of cobalamin-independent synthases together define a catalytic 
cleft in the enzyme. The N-terminal domain is thought to 
bind the substrate, in particular, the negatively charged polyglutamate 
chain. The N-terminal domain is also thought to 
stabilize a loop from the C-terminal domain.
Length=310

 Score = 288 bits (739),  Expect = 1e-92, Method: Composition-based stats.
 Identities = 99/209 (47%), Positives = 142/209 (68%), Gaps = 4/209 (2%)

Query  44   EMVKWFDSNYHYVKPTLQENQVFKLASNPKPVAQFLEAKEAGIITRPVILGPVSFLTLAK  103
            EM KWF++NYHY+ P L ++  FKL SN K + ++ EAK  GI T+PV+LGPV+FL L+K
Sbjct  106  EMTKWFNTNYHYIVPELDKDTEFKLNSN-KLLDEYKEAKALGIETKPVLLGPVTFLKLSK  164

Query  104  ADRGQKIDPIDKINDLVPVYVDLLAQLKAAGVEDVQIDEPVLVFDLPAKSKAAFKPVYEK  163
              +G   D ++ +  L+PVY +LL +L AAG E VQIDEP LV DLP +  AAFK  Y++
Sbjct  165  G-KGGSFDRLELLPKLLPVYKELLKELAAAGAEWVQIDEPALVLDLPPEWLAAFKEAYQE  223

Query  164  IGALGDKAPRIVLATYFGDIVHNIDVLPALHNLHGIHVDLVRNPEQLDAVIAALGPKQVL  223
            + +     P+++LATYFG +   +++L +L  + G+ +DLVR PE L A+       +VL
Sbjct  224  LAS-AKPGPKLLLATYFGSVADALELLASL-PVAGLGLDLVRGPENLAALKKGFPADKVL  281

Query  224  SAGVVDGRNIWKTNFKAAIEKVEHAIQKL  252
            SAGV+DGRNIW+ + +AA+E +E   QKL
Sbjct  282  SAGVIDGRNIWRADLEAALELLETLAQKL  310



Lambda      K        H        a         alpha
   0.318    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 895197530


Query= TCONS_00030255

Length=656
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366771 pfam01717, Meth_synt_2, Cobalamin-independent synthase...  516     0.0  
CDD:400526 pfam08267, Meth_synt_1, Cobalamin-independent synthase...  284     1e-91


>CDD:366771 pfam01717, Meth_synt_2, Cobalamin-independent synthase, Catalytic 
domain.  This is a family of vitamin-B12 independent methionine 
synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine 
methyltransferases, EC:2.1.1.14 from bacteria 
and plants. Plants are the only higher eukaryotes that have 
the required enzymes for methionine synthesis. This enzyme catalyzes 
the last step in the production of methionine by transferring 
a methyl group from 5-methyltetrahydrofolate to homocysteine. 
The aligned region makes up the carboxy region 
of the approximately 750 amino acid protein except in some hypothetical 
archaeal proteins present in the family, where this 
region corresponds to the entire length. This domain contains 
the catalytic residues of the enzyme.
Length=323

 Score = 516 bits (1330),  Expect = 0.0, Method: Composition-based stats.
 Identities = 214/324 (66%), Positives = 247/324 (76%), Gaps = 1/324 (0%)

Query  325  FPTTTIGSFPQTKEIRIQRNKFTKGEITAEEYEKFIEQEIAEVVKIQEELDLDVLVHGEP  384
            FPTTTIGSFPQT EIR  R +F KGEI+ EEYE  I  EI + V+ QE L LDVLVHGEP
Sbjct  1    FPTTTIGSFPQTAEIRAARVEFKKGEISLEEYELRIRGEIEDAVRRQERLGLDVLVHGEP  60

Query  385  ERNDMVQYFGERLTGYVFTTHAWVQSYGSRCVRPPIIVGDISRPAPMTVKESKYAVSISK  444
            ER DMV+YFGE L G+ FT + WVQSYGSRCVRPPII GD+SRPAPMTVK S YA S + 
Sbjct  61   ERGDMVEYFGEALGGFAFTKNGWVQSYGSRCVRPPIIYGDVSRPAPMTVKWSAYAQSTTD  120

Query  445  KPMKGMLTGPITCLRWSFPRDDVHQSVQAQQLALALRDEVIDLEAAGVKVIQVDEPALRE  504
            KP+KGMLTGP+T L WSF RDD  ++  A Q+ALALRDEV DLEAAG+ VIQ+DEPALRE
Sbjct  121  KPVKGMLTGPVTILNWSFVRDDQPRAAIAMQIALALRDEVADLEAAGIAVIQIDEPALRE  180

Query  505  GLPLRAGKEREDYLTWAVRAFRLATSGVSDGTQIHSHFCYSEFQDFFHAIAALDADVLSI  564
            GLPL+   +   YL WAV AFRL T G +D TQIH+H CYS+F D   AIAALDADV++I
Sbjct  181  GLPLKK-LDWAAYLDWAVAAFRLDTCGAADDTQIHTHMCYSDFNDILSAIAALDADVITI  239

Query  565  ENSKSDAKLLKVFVEEAYPRHIGPGVYDIHSPRVPSEQEIKDRIEEMLPYLRPDQLWINP  624
            E S+SD +LL+ F E  Y R IGPGVYDIHSPRVPS +EI   I   L  +  ++LW+NP
Sbjct  240  EASRSDMELLEAFEEWGYGRGIGPGVYDIHSPRVPSMEEIAALIVAALDVVPAERLWVNP  299

Query  625  DCGLKTRQWPETKAALTNMVNAAK  648
            DCGLKTR W E +AAL NMV+AAK
Sbjct  300  DCGLKTRGWEEARAALRNMVDAAK  323


>CDD:400526 pfam08267, Meth_synt_1, Cobalamin-independent synthase, N-terminal 
domain.  The N-terminal domain and C-terminal domains 
of cobalamin-independent synthases together define a catalytic 
cleft in the enzyme. The N-terminal domain is thought to 
bind the substrate, in particular, the negatively charged polyglutamate 
chain. The N-terminal domain is also thought to 
stabilize a loop from the C-terminal domain.
Length=310

 Score = 284 bits (730),  Expect = 1e-91, Method: Composition-based stats.
 Identities = 98/208 (47%), Positives = 141/208 (68%), Gaps = 4/208 (2%)

Query  1    MVKWFDSNYHYVKPTLQENQVFKLASNPKPVAQFLEAKEAGIITRPVILGPVSFLTLAKA  60
            M KWF++NYHY+ P L ++  FKL SN K + ++ EAK  GI T+PV+LGPV+FL L+K 
Sbjct  107  MTKWFNTNYHYIVPELDKDTEFKLNSN-KLLDEYKEAKALGIETKPVLLGPVTFLKLSKG  165

Query  61   DRGQKIDPIDKINDLVPVYVDLLAQLKAAGVEDVQIDEPVLVFDLPAKSKAAFKPVYEKI  120
             +G   D ++ +  L+PVY +LL +L AAG E VQIDEP LV DLP +  AAFK  Y+++
Sbjct  166  -KGGSFDRLELLPKLLPVYKELLKELAAAGAEWVQIDEPALVLDLPPEWLAAFKEAYQEL  224

Query  121  GALGDKAPRIVLATYFGDIVHNIDVLPALHNLHGIHVDLVRNPEQLDAVIAALGPKQVLS  180
             +     P+++LATYFG +   +++L +L  + G+ +DLVR PE L A+       +VLS
Sbjct  225  AS-AKPGPKLLLATYFGSVADALELLASL-PVAGLGLDLVRGPENLAALKKGFPADKVLS  282

Query  181  AGVVDGRNIWKTNFKAAIEKVEHAIQKL  208
            AGV+DGRNIW+ + +AA+E +E   QKL
Sbjct  283  AGVIDGRNIWRADLEAALELLETLAQKL  310



Lambda      K        H        a         alpha
   0.318    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 830306770


Query= TCONS_00034864

Length=355
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366771 pfam01717, Meth_synt_2, Cobalamin-independent synthase...  520     0.0  


>CDD:366771 pfam01717, Meth_synt_2, Cobalamin-independent synthase, Catalytic 
domain.  This is a family of vitamin-B12 independent methionine 
synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine 
methyltransferases, EC:2.1.1.14 from bacteria 
and plants. Plants are the only higher eukaryotes that have 
the required enzymes for methionine synthesis. This enzyme catalyzes 
the last step in the production of methionine by transferring 
a methyl group from 5-methyltetrahydrofolate to homocysteine. 
The aligned region makes up the carboxy region 
of the approximately 750 amino acid protein except in some hypothetical 
archaeal proteins present in the family, where this 
region corresponds to the entire length. This domain contains 
the catalytic residues of the enzyme.
Length=323

 Score = 520 bits (1342),  Expect = 0.0, Method: Composition-based stats.
 Identities = 214/324 (66%), Positives = 247/324 (76%), Gaps = 1/324 (0%)

Query  24   FPTTTIGSFPQTKEIRIQRNKFTKGEITAEEYEKFIEQEIAEVVKIQEELDLDVLVHGEP  83
            FPTTTIGSFPQT EIR  R +F KGEI+ EEYE  I  EI + V+ QE L LDVLVHGEP
Sbjct  1    FPTTTIGSFPQTAEIRAARVEFKKGEISLEEYELRIRGEIEDAVRRQERLGLDVLVHGEP  60

Query  84   ERNDMVQYFGERLTGYVFTTHAWVQSYGSRCVRPPIIVGDISRPAPMTVKESKYAVSISK  143
            ER DMV+YFGE L G+ FT + WVQSYGSRCVRPPII GD+SRPAPMTVK S YA S + 
Sbjct  61   ERGDMVEYFGEALGGFAFTKNGWVQSYGSRCVRPPIIYGDVSRPAPMTVKWSAYAQSTTD  120

Query  144  KPMKGMLTGPITCLRWSFPRDDVHQSVQAQQLALALRDEVIDLEAAGVKVIQVDEPALRE  203
            KP+KGMLTGP+T L WSF RDD  ++  A Q+ALALRDEV DLEAAG+ VIQ+DEPALRE
Sbjct  121  KPVKGMLTGPVTILNWSFVRDDQPRAAIAMQIALALRDEVADLEAAGIAVIQIDEPALRE  180

Query  204  GLPLRAGKEREDYLTWAVRAFRLATSGVSDGTQIHSHFCYSEFQDFFHAIAALDADVLSI  263
            GLPL+   +   YL WAV AFRL T G +D TQIH+H CYS+F D   AIAALDADV++I
Sbjct  181  GLPLKK-LDWAAYLDWAVAAFRLDTCGAADDTQIHTHMCYSDFNDILSAIAALDADVITI  239

Query  264  ENSKSDAKLLKVFVEEAYPRHIGPGVYDIHSPRVPSEQEIKDRIEEMLPYLRPDQLWINP  323
            E S+SD +LL+ F E  Y R IGPGVYDIHSPRVPS +EI   I   L  +  ++LW+NP
Sbjct  240  EASRSDMELLEAFEEWGYGRGIGPGVYDIHSPRVPSMEEIAALIVAALDVVPAERLWVNP  299

Query  324  DCGLKTRQWPETKAALTNMVNAAK  347
            DCGLKTR W E +AAL NMV+AAK
Sbjct  300  DCGLKTRGWEEARAALRNMVDAAK  323



Lambda      K        H        a         alpha
   0.319    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00030256

Length=355
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366771 pfam01717, Meth_synt_2, Cobalamin-independent synthase...  520     0.0  


>CDD:366771 pfam01717, Meth_synt_2, Cobalamin-independent synthase, Catalytic 
domain.  This is a family of vitamin-B12 independent methionine 
synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine 
methyltransferases, EC:2.1.1.14 from bacteria 
and plants. Plants are the only higher eukaryotes that have 
the required enzymes for methionine synthesis. This enzyme catalyzes 
the last step in the production of methionine by transferring 
a methyl group from 5-methyltetrahydrofolate to homocysteine. 
The aligned region makes up the carboxy region 
of the approximately 750 amino acid protein except in some hypothetical 
archaeal proteins present in the family, where this 
region corresponds to the entire length. This domain contains 
the catalytic residues of the enzyme.
Length=323

 Score = 520 bits (1342),  Expect = 0.0, Method: Composition-based stats.
 Identities = 214/324 (66%), Positives = 247/324 (76%), Gaps = 1/324 (0%)

Query  24   FPTTTIGSFPQTKEIRIQRNKFTKGEITAEEYEKFIEQEIAEVVKIQEELDLDVLVHGEP  83
            FPTTTIGSFPQT EIR  R +F KGEI+ EEYE  I  EI + V+ QE L LDVLVHGEP
Sbjct  1    FPTTTIGSFPQTAEIRAARVEFKKGEISLEEYELRIRGEIEDAVRRQERLGLDVLVHGEP  60

Query  84   ERNDMVQYFGERLTGYVFTTHAWVQSYGSRCVRPPIIVGDISRPAPMTVKESKYAVSISK  143
            ER DMV+YFGE L G+ FT + WVQSYGSRCVRPPII GD+SRPAPMTVK S YA S + 
Sbjct  61   ERGDMVEYFGEALGGFAFTKNGWVQSYGSRCVRPPIIYGDVSRPAPMTVKWSAYAQSTTD  120

Query  144  KPMKGMLTGPITCLRWSFPRDDVHQSVQAQQLALALRDEVIDLEAAGVKVIQVDEPALRE  203
            KP+KGMLTGP+T L WSF RDD  ++  A Q+ALALRDEV DLEAAG+ VIQ+DEPALRE
Sbjct  121  KPVKGMLTGPVTILNWSFVRDDQPRAAIAMQIALALRDEVADLEAAGIAVIQIDEPALRE  180

Query  204  GLPLRAGKEREDYLTWAVRAFRLATSGVSDGTQIHSHFCYSEFQDFFHAIAALDADVLSI  263
            GLPL+   +   YL WAV AFRL T G +D TQIH+H CYS+F D   AIAALDADV++I
Sbjct  181  GLPLKK-LDWAAYLDWAVAAFRLDTCGAADDTQIHTHMCYSDFNDILSAIAALDADVITI  239

Query  264  ENSKSDAKLLKVFVEEAYPRHIGPGVYDIHSPRVPSEQEIKDRIEEMLPYLRPDQLWINP  323
            E S+SD +LL+ F E  Y R IGPGVYDIHSPRVPS +EI   I   L  +  ++LW+NP
Sbjct  240  EASRSDMELLEAFEEWGYGRGIGPGVYDIHSPRVPSMEEIAALIVAALDVVPAERLWVNP  299

Query  324  DCGLKTRQWPETKAALTNMVNAAK  347
            DCGLKTR W E +AAL NMV+AAK
Sbjct  300  DCGLKTRGWEEARAALRNMVDAAK  323



Lambda      K        H        a         alpha
   0.319    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 419985660


Query= TCONS_00034865

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465084 pfam16282, SANT_DAMP1_like, SANT/Myb-like domain of DA...  150     4e-45


>CDD:465084 pfam16282, SANT_DAMP1_like, SANT/Myb-like domain of DAMP1.  This 
domain, approximately 90 residues, is mainly found in DNA 
methyltransferase 1-associated protein 1 (DAMP1) that plays 
an important role in development and maintenace of genome 
integrity in various mammalia species. It mainly consists of 
tandem repeats of three alpha-helices that are arranged in 
a helix-turn-helix motif and shows a structual similarity with 
SANT domain and Myb DNA-binding domain, indicating it contains 
a putative DNA binding site.
Length=80

 Score = 150 bits (382),  Expect = 4e-45, Method: Composition-based stats.
 Identities = 48/96 (50%), Positives = 60/96 (63%), Gaps = 16/96 (17%)

Query  19   YPFAKYNVKPRVPRRYTDEEYNRHLKSDDWSRQETDYLMDLVEEYDLRWVVIADRYDFQP  78
            YPFAK+N K  +P  YTDEEY RHLK DDW+++ETDYL DL   YDLR++VIADRYDF P
Sbjct  1    YPFAKFNKKVDIPT-YTDEEYERHLKDDDWTKEETDYLFDLCRRYDLRFIVIADRYDFPP  59

Query  79   QPIDAEANATALVPAKQYRTMEQMKARYYFIAASML  114
                              R++E +K RYY +   +L
Sbjct  60   GK---------------KRSVEDLKERYYSVCRKLL  80



Lambda      K        H        a         alpha
   0.308    0.124    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00030257

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  89.0    7e-22
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  74.9    5e-17


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 89.0 bits (221),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 40/118 (34%), Positives = 64/118 (54%), Gaps = 11/118 (9%)

Query  198  DDKDLAKLISCVFLNAVKFT-NSGMITVSAKVGSNIGEVFITVRDTGPGIPEAFLPKLFQ  256
            D+  L +++S +  NA+K    +G ITV+   G   GE+ +TV D G GIP   LP++F+
Sbjct  2    DELRLRQVLSNLLDNALKHAAKAGEITVTLSEG---GELTLTVEDNGIGIPPEDLPRIFE  58

Query  257  PFARGDASITRSKDGLGLGLLVAKGLARKMGGDLICVRSSTSGPDHGSEFEISIPVTQ  314
            PF+  D    R   G GLGL + + L   +GG +    +  S P  G+   +++P+ Q
Sbjct  59   PFSTAD---KRGGGGTGLGLSIVRKLVELLGGTI----TVESEPGGGTTVTLTLPLAQ  109


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 74.9 bits (185),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 49/154 (32%)

Query  416  LVAEDNMINRRVLVNMLKRLGYQDIYEACNGKEAVRIMQDVLAAQKPKASSRLSDCDQLG  475
            L+ +D+ + R +L  +L++ GY  + EA +GKEA+ +++                     
Sbjct  2    LIVDDDPLIRELLRQLLEKEGY-VVAEADDGKEALELLK---------------------  39

Query  476  DCGCKRMKPVDVVLMDLWMPEMDGYEATSKILRLVDDYQRRTLQEQPRSQANNLLLPLPT  535
                   +  D++L+D+ MP MDG E   +I         R                   
Sbjct  40   ------EERPDLILLDINMPGMDGLELLKRI---------RRRDPTTP------------  72

Query  536  VLAVSADVTDEALGRASKVGIKGYMTKPYKLSDL  569
            V+ ++A   ++    A + G   +++KP+   +L
Sbjct  73   VIILTAHGDEDDAVEALEAGADDFLSKPFDPDEL  106



Lambda      K        H        a         alpha
   0.315    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 744225144


Query= TCONS_00030258

Length=418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465084 pfam16282, SANT_DAMP1_like, SANT/Myb-like domain of DA...  74.4    2e-17


>CDD:465084 pfam16282, SANT_DAMP1_like, SANT/Myb-like domain of DAMP1.  This 
domain, approximately 90 residues, is mainly found in DNA 
methyltransferase 1-associated protein 1 (DAMP1) that plays 
an important role in development and maintenace of genome 
integrity in various mammalia species. It mainly consists of 
tandem repeats of three alpha-helices that are arranged in 
a helix-turn-helix motif and shows a structual similarity with 
SANT domain and Myb DNA-binding domain, indicating it contains 
a putative DNA binding site.
Length=80

 Score = 74.4 bits (184),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 22/58 (38%), Positives = 29/58 (50%), Gaps = 15/58 (26%)

Query  1   MDLVEEYDLRWVVIADRYDFQPQPIDAEANATALVPAKQYRTMEQMKARYYFIAASML  58
            DL   YDLR++VIADRYDF P                  R++E +K RYY +   +L
Sbjct  38  FDLCRRYDLRFIVIADRYDFPPGK---------------KRSVEDLKERYYSVCRKLL  80



Lambda      K        H        a         alpha
   0.308    0.124    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00034866

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-...  89.0    7e-22
CDD:395025 pfam00072, Response_reg, Response regulator receiver d...  74.9    5e-17


>CDD:460579 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like 
ATPase.  This family represents the structurally related 
ATPase domains of histidine kinase, DNA gyrase B and 
HSP90.
Length=109

 Score = 89.0 bits (221),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 40/118 (34%), Positives = 64/118 (54%), Gaps = 11/118 (9%)

Query  198  DDKDLAKLISCVFLNAVKFT-NSGMITVSAKVGSNIGEVFITVRDTGPGIPEAFLPKLFQ  256
            D+  L +++S +  NA+K    +G ITV+   G   GE+ +TV D G GIP   LP++F+
Sbjct  2    DELRLRQVLSNLLDNALKHAAKAGEITVTLSEG---GELTLTVEDNGIGIPPEDLPRIFE  58

Query  257  PFARGDASITRSKDGLGLGLLVAKGLARKMGGDLICVRSSTSGPDHGSEFEISIPVTQ  314
            PF+  D    R   G GLGL + + L   +GG +    +  S P  G+   +++P+ Q
Sbjct  59   PFSTAD---KRGGGGTGLGLSIVRKLVELLGGTI----TVESEPGGGTTVTLTLPLAQ  109


>CDD:395025 pfam00072, Response_reg, Response regulator receiver domain. 
 This domain receives the signal from the sensor partner in 
bacterial two-component systems. It is usually found N-terminal 
to a DNA binding effector domain.
Length=111

 Score = 74.9 bits (185),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 49/154 (32%)

Query  416  LVAEDNMINRRVLVNMLKRLGYQDIYEACNGKEAVRIMQDVLAAQKPKASSRLSDCDQLG  475
            L+ +D+ + R +L  +L++ GY  + EA +GKEA+ +++                     
Sbjct  2    LIVDDDPLIRELLRQLLEKEGY-VVAEADDGKEALELLK---------------------  39

Query  476  DCGCKRMKPVDVVLMDLWMPEMDGYEATSKILRLVDDYQRRTLQEQPRSQANNLLLPLPT  535
                   +  D++L+D+ MP MDG E   +I         R                   
Sbjct  40   ------EERPDLILLDINMPGMDGLELLKRI---------RRRDPTTP------------  72

Query  536  VLAVSADVTDEALGRASKVGIKGYMTKPYKLSDL  569
            V+ ++A   ++    A + G   +++KP+   +L
Sbjct  73   VIILTAHGDEDDAVEALEAGADDFLSKPFDPDEL  106



Lambda      K        H        a         alpha
   0.315    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 744225144


Query= TCONS_00030259

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD. M...  141     6e-44


>CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD.  Members 
of this family are implicated in bringing cargo forward from 
the ER and binding to coat proteins by their cytoplasmic domains. 
This domain corresponds closely to the beta-strand rich 
GOLD domain described in. The GOLD domain is always found 
combined with lipid- or membrane-association domains.
Length=181

 Score = 141 bits (357),  Expect = 6e-44, Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 13/152 (9%)

Query  3    ITVDETFDNDHRVVSKRDG-HAGRFTFSAADAGQHRICLTPDTNAAVGGWLSGAPAGAVR  61
             TV +   N + + SK+D    G F+F+A ++G+++ C     +             +  
Sbjct  40   FTVTDPDGNGNVIYSKKDRKSGGDFSFTATESGEYKFCFDNSFSTFS----------SKT  89

Query  62   VNLDIAIGETSKIETE--DKDKMKDIVQKVKDLNGRLQDIRREQVFQREREAEFRDQSEA  119
            V+ DI +G  +K   +   K+K+  + ++++ L  +L DI+REQ + REREA  RD +E+
Sbjct  90   VSFDIKVGSEAKDYDDVAKKEKLDPLEEELRKLEDQLNDIKREQKYLREREARHRDTNES  149

Query  120  TNARVVRWTLIQLAVLSATCAWQLSHLRSFFI  151
            TN+RVV W++IQL VL      Q+ +L+ FF 
Sbjct  150  TNSRVVWWSIIQLLVLVGVSVLQVYYLKRFFE  181



Lambda      K        H        a         alpha
   0.320    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0821    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00030260

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD. M...  115     4e-33


>CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD.  Members 
of this family are implicated in bringing cargo forward from 
the ER and binding to coat proteins by their cytoplasmic domains. 
This domain corresponds closely to the beta-strand rich 
GOLD domain described in. The GOLD domain is always found 
combined with lipid- or membrane-association domains.
Length=181

 Score = 115 bits (290),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 42/157 (27%), Positives = 77/157 (49%), Gaps = 23/157 (15%)

Query  29   ALYFYMDGRQTKCFYEDLPKDTLVVGNFRTEVINQQSNTYSVDPNLKMLITVDETFDNDH  88
            AL F +   + +CFYE++PK TLV G+++            VD       TV +   N +
Sbjct  1    ALTFELPAGEKECFYEEVPKGTLVTGSYQV----ISGGGLDVD------FTVTDPDGNGN  50

Query  89   RVVSKRDG-HAGRFTFSAADAGQHRICLTPDTNAAVGGWLSGAPAGAVRVNLDIAIGETS  147
             + SK+D    G F+F+A ++G+++ C     +             +  V+ DI +G  +
Sbjct  51   VIYSKKDRKSGGDFSFTATESGEYKFCFDNSFSTFS----------SKTVSFDIKVGSEA  100

Query  148  KIETE--DKDKMKDIVQKVKDLNGRLQDIRREQVFQR  182
            K   +   K+K+  + ++++ L  +L DI+REQ + R
Sbjct  101  KDYDDVAKKEKLDPLEEELRKLEDQLNDIKREQKYLR  137



Lambda      K        H        a         alpha
   0.322    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00030261

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00030262

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00030263

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus. This fam...  167     8e-52
CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  78.7    4e-17


>CDD:461913 pfam06441, EHN, Epoxide hydrolase N-terminus.  This family represents 
the N-terminal region of the eukaryotic epoxide hydrolase 
protein. Epoxide hydrolases (EC:3.3.2.3) comprise a group 
of functionally related enzymes that catalyze the addition 
of water to oxirane compounds (epoxides), thereby usually 
generating vicinal trans-diols. EHs have been found in all 
types of living organisms, including mammals, invertebrates, 
plants, fungi and bacteria. In animals, the major interest 
in EH is directed towards their detoxification capacity for 
epoxides since they are important safeguards against the cytotoxic 
and genotoxic potential of oxirane derivatives that 
are often reactive electrophiles because of the high tension 
of the three-membered ring system and the strong polarization 
of the C--O bonds. This is of significant relevance because 
epoxides are frequent intermediary metabolites which arise 
during the biotransformation of foreign compounds. This family 
is often found in conjunction with pfam00561.
Length=106

 Score = 167 bits (426),  Expect = 8e-52, Method: Composition-based stats.
 Identities = 62/111 (56%), Positives = 72/111 (65%), Gaps = 6/111 (5%)

Query  4    IRPFTISIPDSQLDLLHQKLQAATFPDELDAAGWDLGVPLDEIKRLTAYWRDGFDWRAKE  63
            IRPFTI +PD +LD L Q+L    +PDEL+   W  GVPLD ++ L  YWRDG+DWRA+E
Sbjct  1    IRPFTIHVPDEELDDLRQRLALTRWPDELEGDDWWYGVPLDYLRELVDYWRDGYDWRAQE  60

Query  64   KELNGKLHQFMVSVSVSGFVQLDIHCVHQRSPMPGAIPLLFLHGWPGSFLE  114
              LN    QF   +       LDIH VH RS  P AIPLL LHGWPGSFLE
Sbjct  61   ARLN-SFPQFTTEID-----GLDIHFVHVRSNKPDAIPLLLLHGWPGSFLE  105


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 78.7 bits (194),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 75/226 (33%), Gaps = 30/226 (13%)

Query  101  PLLFLHGWPGSFLEAVKLIPLLTKGDENQPAFDLVVPSLPNFGFSQ-GVKQRGFGLAQYA  159
            P+L LHG PGS     KL P L +       F ++   L  FG S     Q  +     A
Sbjct  2    PVLLLHGLPGSSDLWRKLAPALARDG-----FRVIALDLRGFGKSSRPKAQDDYRTDDLA  56

Query  160  EAMHSLMLNLGYEKYVIQGGDWGSIIARVMATIYPQHIKAVHLNFAPVAPPYPWRHPWIF  219
            E +  ++  LG EK  + G   G +IA   A  YP  +KA+ L    + PP+       F
Sbjct  57   EDLEYILEALGLEKVNLVGHSMGGLIALAYAAKYPDRVKALVLL-GALDPPHELDEADRF  115

Query  220  ---------------VQSILTLPFSSRSRALISTTLDYLNRGNAYMRQQETAPQTLG-YG  263
                                     ++  AL+   L  L       ++  +    L    
Sbjct  116  ILALFPGFFDGFVADFAPNPLGRLVAKLLALLLLRLRLLKALPLLNKRFPSGDYALAKSL  175

Query  264  LHDSPVALLAWVYDKLHAWADDYPW-------TDDEILTWVSVYQF  302
            +  + + +  W  +    +               D ++   ++ + 
Sbjct  176  VTGALLFIETWSTELRAKFLGRLDEPTLIIWGDQDPLVPPQALEKL  221



Lambda      K        H        a         alpha
   0.321    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00030264

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00030265

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463285 pfam11470, TUG-UBL1, TUG ubiquitin-like domain. TUG is...  100     1e-26


>CDD:463285 pfam11470, TUG-UBL1, TUG ubiquitin-like domain.  TUG is a GLUT4 
regulating protein and functions to retain membrane vesicles 
containing GLUT4 intracellularly. TUG releases the GLUT4 
containing vesicles to the cellular exocytic machinery in response 
to insulin stimulation which allows translocation to 
the plasma membrane. TUG has an N-terminal ubiquitin-like domain 
(UBL1) which in similar proteins appears to participate 
in protein-protein interactions. The region does have a area 
of negative electrostatic potential and increased backbone 
motility which leads to suggestions of a potential protein-protein 
interaction site. This domain is also found at the 
N-terminus of yeast UBX4.
Length=65

 Score = 100 bits (251),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 33/65 (51%), Positives = 41/65 (63%), Gaps = 1/65 (2%)

Query  8   LDSTARRATIKTTPGKHLTDILQEACAKLGL-NASQYGLKYKGKQLDLSLVFRLSGLASG  66
           +    RR  +K TP   L D+L+EAC K  L ++  Y LK+  K LDLSL FRLS L +G
Sbjct  1   VTYNFRRKKVKVTPNTTLNDVLEEACKKFKLDDSDSYTLKHNNKPLDLSLPFRLSNLPNG  60

Query  67  AKLEL  71
           AKLEL
Sbjct  61  AKLEL  65



Lambda      K        H        a         alpha
   0.313    0.129    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 648020248


Query= TCONS_00034867

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00030266

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00034868

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00034869

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00030267

Length=241


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00034870

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00030268

Length=372


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 446726320


Query= TCONS_00030269

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00034872

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00030270

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459721 pfam00227, Proteasome, Proteasome subunit. The proteas...  153     7e-48


>CDD:459721 pfam00227, Proteasome, Proteasome subunit.  The proteasome is 
a multisubunit structure that degrades proteins. Protein degradation 
is an essential component of regulation because proteins 
can become misfolded, damaged, or unnecessary. Proteasomes 
and their homologs vary greatly in complexity: from HslV 
(heat shock locus v), which is encoded by 1 gene in bacteria, 
to the eukaryotic 20S proteasome, which is encoded by more 
than 14 genes. Recently evidence of two novel groups of 
bacterial proteasomes was proposed. The first is Anbu, which 
is sparsely distributed among cyanobacteria and proteobacteria. 
The second is call beta-proteobacteria proteasome homolog 
(BPH).
Length=188

 Score = 153 bits (389),  Expect = 7e-48, Method: Composition-based stats.
 Identities = 56/182 (31%), Positives = 84/182 (46%), Gaps = 3/182 (2%)

Query  14   LGITGKDFVILAASKAAMRGPTILKAED-DKTRQLSQHTLMAFSGEAGDTVQFAEYIQAN  72
            +GI GKD V+LAA K A RG  +L  +  +K  ++  H  MAF+G A D     +  +A 
Sbjct  8    VGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADARTLVDRARAE  67

Query  73   VALYTMRNDTELRPNAVANFVRGELARSLRS-RNPYTVNLLLGGVDSITQEPHLYWIDYL  131
              LY +R    +     A       A +  S R P+ V+LL+ G D     PHLY ID  
Sbjct  68   AQLYRLRYGRPIPVELAARIADLLQAYTQYSGRRPFGVSLLIAGYDE-DGGPHLYQIDPS  126

Query  132  SALARVPYAAHGYAQYYCLSILDKHHHPDISLEQGMKLLQMCTDELKRRLPIDYKGVLVK  191
             +       A G    Y   +L+K + PD++LE+ ++L      E   R  +    + V 
Sbjct  127  GSYIEYKATAIGSGSQYAYGVLEKLYRPDLTLEEAVELAVKALKEAIDRDALSGGNIEVA  186

Query  192  VV  193
            V+
Sbjct  187  VI  188



Lambda      K        H        a         alpha
   0.320    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00030271

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00034874

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459721 pfam00227, Proteasome, Proteasome subunit. The proteas...  137     4e-42


>CDD:459721 pfam00227, Proteasome, Proteasome subunit.  The proteasome is 
a multisubunit structure that degrades proteins. Protein degradation 
is an essential component of regulation because proteins 
can become misfolded, damaged, or unnecessary. Proteasomes 
and their homologs vary greatly in complexity: from HslV 
(heat shock locus v), which is encoded by 1 gene in bacteria, 
to the eukaryotic 20S proteasome, which is encoded by more 
than 14 genes. Recently evidence of two novel groups of 
bacterial proteasomes was proposed. The first is Anbu, which 
is sparsely distributed among cyanobacteria and proteobacteria. 
The second is call beta-proteobacteria proteasome homolog 
(BPH).
Length=188

 Score = 137 bits (348),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 49/149 (33%), Positives = 69/149 (46%), Gaps = 3/149 (2%)

Query  14   LGITGKDFVILAASKAAMRGPTILKAED-DKTRQLSQHTLMAFSGEAGDTVQFAEYIQAN  72
            +GI GKD V+LAA K A RG  +L  +  +K  ++  H  MAF+G A D     +  +A 
Sbjct  8    VGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADARTLVDRARAE  67

Query  73   VALYTMRNDTELRPNAVANFVRGELARSLRS-RNPYTVNLLLGGVDSITQEPHLYWIDYL  131
              LY +R    +     A       A +  S R P+ V+LL+ G D     PHLY ID  
Sbjct  68   AQLYRLRYGRPIPVELAARIADLLQAYTQYSGRRPFGVSLLIAGYDE-DGGPHLYQIDPS  126

Query  132  SALARVPYAAHGYAQYYCLSILDKHHHPD  160
             +       A G    Y   +L+K + PD
Sbjct  127  GSYIEYKATAIGSGSQYAYGVLEKLYRPD  155



Lambda      K        H        a         alpha
   0.321    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00030272

Length=656


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 830306770


Query= TCONS_00030273

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459721 pfam00227, Proteasome, Proteasome subunit. The proteas...  133     4e-41


>CDD:459721 pfam00227, Proteasome, Proteasome subunit.  The proteasome is 
a multisubunit structure that degrades proteins. Protein degradation 
is an essential component of regulation because proteins 
can become misfolded, damaged, or unnecessary. Proteasomes 
and their homologs vary greatly in complexity: from HslV 
(heat shock locus v), which is encoded by 1 gene in bacteria, 
to the eukaryotic 20S proteasome, which is encoded by more 
than 14 genes. Recently evidence of two novel groups of 
bacterial proteasomes was proposed. The first is Anbu, which 
is sparsely distributed among cyanobacteria and proteobacteria. 
The second is call beta-proteobacteria proteasome homolog 
(BPH).
Length=188

 Score = 133 bits (338),  Expect = 4e-41, Method: Composition-based stats.
 Identities = 48/148 (32%), Positives = 68/148 (46%), Gaps = 3/148 (2%)

Query  5    LGITGKDFVILAASKAAMRGPTILKAED-DKTRQLSQHTLMAFSGEAGDTVQFAEYIQAN  63
            +GI GKD V+LAA K A RG  +L  +  +K  ++  H  MAF+G A D     +  +A 
Sbjct  8    VGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADARTLVDRARAE  67

Query  64   VALYTMRNDTELRPNAVANFVRGELARSLRS-RNPYTVNLLLGGVDSITQEPHLYWIDYL  122
              LY +R    +     A       A +  S R P+ V+LL+ G D     PHLY ID  
Sbjct  68   AQLYRLRYGRPIPVELAARIADLLQAYTQYSGRRPFGVSLLIAGYDE-DGGPHLYQIDPS  126

Query  123  SALARVPYAAHGYAQYYCLSILDKHHHP  150
             +       A G    Y   +L+K + P
Sbjct  127  GSYIEYKATAIGSGSQYAYGVLEKLYRP  154



Lambda      K        H        a         alpha
   0.321    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00034876

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459721 pfam00227, Proteasome, Proteasome subunit. The proteas...  153     6e-48


>CDD:459721 pfam00227, Proteasome, Proteasome subunit.  The proteasome is 
a multisubunit structure that degrades proteins. Protein degradation 
is an essential component of regulation because proteins 
can become misfolded, damaged, or unnecessary. Proteasomes 
and their homologs vary greatly in complexity: from HslV 
(heat shock locus v), which is encoded by 1 gene in bacteria, 
to the eukaryotic 20S proteasome, which is encoded by more 
than 14 genes. Recently evidence of two novel groups of 
bacterial proteasomes was proposed. The first is Anbu, which 
is sparsely distributed among cyanobacteria and proteobacteria. 
The second is call beta-proteobacteria proteasome homolog 
(BPH).
Length=188

 Score = 153 bits (389),  Expect = 6e-48, Method: Composition-based stats.
 Identities = 56/182 (31%), Positives = 84/182 (46%), Gaps = 3/182 (2%)

Query  5    LGITGKDFVILAASKAAMRGPTILKAED-DKTRQLSQHTLMAFSGEAGDTVQFAEYIQAN  63
            +GI GKD V+LAA K A RG  +L  +  +K  ++  H  MAF+G A D     +  +A 
Sbjct  8    VGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADARTLVDRARAE  67

Query  64   VALYTMRNDTELRPNAVANFVRGELARSLRS-RNPYTVNLLLGGVDSITQEPHLYWIDYL  122
              LY +R    +     A       A +  S R P+ V+LL+ G D     PHLY ID  
Sbjct  68   AQLYRLRYGRPIPVELAARIADLLQAYTQYSGRRPFGVSLLIAGYDE-DGGPHLYQIDPS  126

Query  123  SALARVPYAAHGYAQYYCLSILDKHHHPDISLEQGMKLLQMCTDELKRRLPIDYKGVLVK  182
             +       A G    Y   +L+K + PD++LE+ ++L      E   R  +    + V 
Sbjct  127  GSYIEYKATAIGSGSQYAYGVLEKLYRPDLTLEEAVELAVKALKEAIDRDALSGGNIEVA  186

Query  183  VV  184
            V+
Sbjct  187  VI  188



Lambda      K        H        a         alpha
   0.320    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00030274

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459721 pfam00227, Proteasome, Proteasome subunit. The proteas...  153     6e-48


>CDD:459721 pfam00227, Proteasome, Proteasome subunit.  The proteasome is 
a multisubunit structure that degrades proteins. Protein degradation 
is an essential component of regulation because proteins 
can become misfolded, damaged, or unnecessary. Proteasomes 
and their homologs vary greatly in complexity: from HslV 
(heat shock locus v), which is encoded by 1 gene in bacteria, 
to the eukaryotic 20S proteasome, which is encoded by more 
than 14 genes. Recently evidence of two novel groups of 
bacterial proteasomes was proposed. The first is Anbu, which 
is sparsely distributed among cyanobacteria and proteobacteria. 
The second is call beta-proteobacteria proteasome homolog 
(BPH).
Length=188

 Score = 153 bits (389),  Expect = 6e-48, Method: Composition-based stats.
 Identities = 56/182 (31%), Positives = 84/182 (46%), Gaps = 3/182 (2%)

Query  5    LGITGKDFVILAASKAAMRGPTILKAED-DKTRQLSQHTLMAFSGEAGDTVQFAEYIQAN  63
            +GI GKD V+LAA K A RG  +L  +  +K  ++  H  MAF+G A D     +  +A 
Sbjct  8    VGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADARTLVDRARAE  67

Query  64   VALYTMRNDTELRPNAVANFVRGELARSLRS-RNPYTVNLLLGGVDSITQEPHLYWIDYL  122
              LY +R    +     A       A +  S R P+ V+LL+ G D     PHLY ID  
Sbjct  68   AQLYRLRYGRPIPVELAARIADLLQAYTQYSGRRPFGVSLLIAGYDE-DGGPHLYQIDPS  126

Query  123  SALARVPYAAHGYAQYYCLSILDKHHHPDISLEQGMKLLQMCTDELKRRLPIDYKGVLVK  182
             +       A G    Y   +L+K + PD++LE+ ++L      E   R  +    + V 
Sbjct  127  GSYIEYKATAIGSGSQYAYGVLEKLYRPDLTLEEAVELAVKALKEAIDRDALSGGNIEVA  186

Query  183  VV  184
            V+
Sbjct  187  VI  188



Lambda      K        H        a         alpha
   0.320    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00030275

Length=614
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      117     1e-29
CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases a...  84.2    9e-21


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 117 bits (294),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 107/283 (38%), Gaps = 31/283 (11%)

Query  229  VGMNNIKANDYLNVVVQVLAHVLPIRNYFL-----LHQFPVPGTPELALRFSTLVRKLWN  283
             G+ N+    Y+N V+Q L  + P R+Y L                L      L + L  
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQ-  59

Query  284  PKAFRSHVSPHELLQEIALRSSKRFTLTQQSDPVEFLSWFLNNLHLSLGGSKKPSSTPTS  343
              +  S VSP    + +  + +  F+  +Q D  EFL + L+ LH  L  +   S+   S
Sbjct  60   KNSKSSSVSPKMFKKSLG-KLNPDFSGYKQQDAQEFLLFLLDGLHEDL--NGNHSTENES  116

Query  344  VIQAAFQGHLRIESQAITAHSDTQNARLVFTESGTINSQTIPFLILTLDLPPTPLFQSAN  403
            +I   F+G L+              +RL     G ++    PF  L+L +P         
Sbjct  117  LITDLFRGQLK--------------SRLKCLSCGEVSETFEPFSDLSLPIPGDSAELK-T  161

Query  404  RESIIPHVPLTTLLNKYNGIT----ASEKLAHRVRHRLLHPLPPYLLFHIKRFSKNRFVS  459
                I  +  + L    +               ++   +  LPP L+ H+KRFS NR   
Sbjct  162  ASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW  221

Query  460  ERNPTIVTFPSPRSLDMSPYVEPNPEIWPPGEPILYDLVANII  502
            E+  T V F  P  LD+S Y+              Y LVA ++
Sbjct  222  EKLNTEVEF--PLELDLSRYLAE-ELKPKTNNLQDYRLVAVVV  261


>CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other 
protein.  
Length=63

 Score = 84.2 bits (209),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 32/63 (51%), Gaps = 0/63 (0%)

Query  128  CSVSLSNINVYACLVCGKYFQGRGPRSYAYFHALEVGHHVFINISTKKVYVLPEGYEVKS  187
            CS+  +  N++ CL CG    GR   S+A  H  E GH + +N+ST  VY  P    V  
Sbjct  1    CSLCGNTSNLWLCLTCGHVGCGRYQNSHALEHYEETGHPLAVNLSTLTVYCYPCDDYVHD  60

Query  188  KSL  190
             SL
Sbjct  61   PSL  63



Lambda      K        H        a         alpha
   0.315    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 780091416


Query= TCONS_00034877

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459721 pfam00227, Proteasome, Proteasome subunit. The proteas...  151     3e-47


>CDD:459721 pfam00227, Proteasome, Proteasome subunit.  The proteasome is 
a multisubunit structure that degrades proteins. Protein degradation 
is an essential component of regulation because proteins 
can become misfolded, damaged, or unnecessary. Proteasomes 
and their homologs vary greatly in complexity: from HslV 
(heat shock locus v), which is encoded by 1 gene in bacteria, 
to the eukaryotic 20S proteasome, which is encoded by more 
than 14 genes. Recently evidence of two novel groups of 
bacterial proteasomes was proposed. The first is Anbu, which 
is sparsely distributed among cyanobacteria and proteobacteria. 
The second is call beta-proteobacteria proteasome homolog 
(BPH).
Length=188

 Score = 151 bits (383),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 54/176 (31%), Positives = 80/176 (45%), Gaps = 3/176 (2%)

Query  5    LGITGKDFVILAASKAAMRGPTILKAED-DKTRQLSQHTLMAFSGEAGDTVQFAEYIQAN  63
            +GI GKD V+LAA K A RG  +L  +  +K  ++  H  MAF+G A D     +  +A 
Sbjct  8    VGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADARTLVDRARAE  67

Query  64   VALYTMRNDTELRPNAVANFVRGELARSLRS-RNPYTVNLLLGGVDSITQEPHLYWIDYL  122
              LY +R    +     A       A +  S R P+ V+LL+ G D     PHLY ID  
Sbjct  68   AQLYRLRYGRPIPVELAARIADLLQAYTQYSGRRPFGVSLLIAGYDE-DGGPHLYQIDPS  126

Query  123  SALARVPYAAHGYAQYYCLSILDKHHHPDISLEQGMKLLQMCTDELKRRLPIDYKG  178
             +       A G    Y   +L+K + PD++LE+ ++L      E   R  +    
Sbjct  127  GSYIEYKATAIGSGSQYAYGVLEKLYRPDLTLEEAVELAVKALKEAIDRDALSGGN  182



Lambda      K        H        a         alpha
   0.320    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00034878

Length=182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459721 pfam00227, Proteasome, Proteasome subunit. The proteas...  130     2e-39


>CDD:459721 pfam00227, Proteasome, Proteasome subunit.  The proteasome is 
a multisubunit structure that degrades proteins. Protein degradation 
is an essential component of regulation because proteins 
can become misfolded, damaged, or unnecessary. Proteasomes 
and their homologs vary greatly in complexity: from HslV 
(heat shock locus v), which is encoded by 1 gene in bacteria, 
to the eukaryotic 20S proteasome, which is encoded by more 
than 14 genes. Recently evidence of two novel groups of 
bacterial proteasomes was proposed. The first is Anbu, which 
is sparsely distributed among cyanobacteria and proteobacteria. 
The second is call beta-proteobacteria proteasome homolog 
(BPH).
Length=188

 Score = 130 bits (330),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 3/164 (2%)

Query  2    RGPTILKAED-DKTRQLSQHTLMAFSGEAGDTVQFAEYIQANVALYTMRNDTELRPNAVA  60
            RG  +L  +  +K  ++  H  MAF+G A D     +  +A   LY +R    +     A
Sbjct  26   RGSKLLSKDTVEKIFKIDDHIGMAFAGLAADARTLVDRARAEAQLYRLRYGRPIPVELAA  85

Query  61   NFVRGELARSLRS-RNPYTVNLLLGGVDSITQEPHLYWIDYLSALARVPYAAHGYAQYYC  119
                   A +  S R P+ V+LL+ G D     PHLY ID   +       A G    Y 
Sbjct  86   RIADLLQAYTQYSGRRPFGVSLLIAGYDE-DGGPHLYQIDPSGSYIEYKATAIGSGSQYA  144

Query  120  LSILDKHHHPDISLEQGMKLLQMCTDELKRRLPIDYKGVLVKVV  163
              +L+K + PD++LE+ ++L      E   R  +    + V V+
Sbjct  145  YGVLEKLYRPDLTLEEAVELAVKALKEAIDRDALSGGNIEVAVI  188



Lambda      K        H        a         alpha
   0.319    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00034879

Length=614
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      117     1e-29
CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases a...  84.2    9e-21


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 117 bits (294),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 107/283 (38%), Gaps = 31/283 (11%)

Query  229  VGMNNIKANDYLNVVVQVLAHVLPIRNYFL-----LHQFPVPGTPELALRFSTLVRKLWN  283
             G+ N+    Y+N V+Q L  + P R+Y L                L      L + L  
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQ-  59

Query  284  PKAFRSHVSPHELLQEIALRSSKRFTLTQQSDPVEFLSWFLNNLHLSLGGSKKPSSTPTS  343
              +  S VSP    + +  + +  F+  +Q D  EFL + L+ LH  L  +   S+   S
Sbjct  60   KNSKSSSVSPKMFKKSLG-KLNPDFSGYKQQDAQEFLLFLLDGLHEDL--NGNHSTENES  116

Query  344  VIQAAFQGHLRIESQAITAHSDTQNARLVFTESGTINSQTIPFLILTLDLPPTPLFQSAN  403
            +I   F+G L+              +RL     G ++    PF  L+L +P         
Sbjct  117  LITDLFRGQLK--------------SRLKCLSCGEVSETFEPFSDLSLPIPGDSAELK-T  161

Query  404  RESIIPHVPLTTLLNKYNGIT----ASEKLAHRVRHRLLHPLPPYLLFHIKRFSKNRFVS  459
                I  +  + L    +               ++   +  LPP L+ H+KRFS NR   
Sbjct  162  ASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW  221

Query  460  ERNPTIVTFPSPRSLDMSPYVEPNPEIWPPGEPILYDLVANII  502
            E+  T V F  P  LD+S Y+              Y LVA ++
Sbjct  222  EKLNTEVEF--PLELDLSRYLAE-ELKPKTNNLQDYRLVAVVV  261


>CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other 
protein.  
Length=63

 Score = 84.2 bits (209),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 32/63 (51%), Gaps = 0/63 (0%)

Query  128  CSVSLSNINVYACLVCGKYFQGRGPRSYAYFHALEVGHHVFINISTKKVYVLPEGYEVKS  187
            CS+  +  N++ CL CG    GR   S+A  H  E GH + +N+ST  VY  P    V  
Sbjct  1    CSLCGNTSNLWLCLTCGHVGCGRYQNSHALEHYEETGHPLAVNLSTLTVYCYPCDDYVHD  60

Query  188  KSL  190
             SL
Sbjct  61   PSL  63



Lambda      K        H        a         alpha
   0.315    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 780091416


Query= TCONS_00030277

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432700 pfam12656, G-patch_2, G-patch domain. Yeast Spp2, a G-...  90.0    7e-23


>CDD:432700 pfam12656, G-patch_2, G-patch domain.  Yeast Spp2, a G-patch 
protein and spliceosome component, interacts with the ATP-dependent 
DExH-box splicing factor Prp2. As this interaction involves 
the G-patch sequence in Spp2 and is required for the 
recruitment of Prp2 to the spliceosome before the first catalytic 
step of splicing, it is proposed that Spp2 might be an 
accessory factor that confers spliceosome specificity on Prp2.
Length=61

 Score = 90.0 bits (224),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 44/68 (65%), Gaps = 7/68 (10%)

Query  284  PEPATLDQYNAIPVEEFGAALLRGMGWKEGQSIGRGKYGTSATDYRSQSPRIPERRPGFL  343
            P+ A+L+ Y  +PVEEFGAA+LRGMGWK GQ IG+ K G          P+  +RRPG L
Sbjct  1    PDEASLEDYEKVPVEEFGAAMLRGMGWKPGQGIGKNKKG-------DVKPKEYKRRPGGL  53

Query  344  GIGAKDVS  351
            G+GAK   
Sbjct  54   GLGAKPAE  61



Lambda      K        H        a         alpha
   0.311    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 714336584


Query= TCONS_00030278

Length=966
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462540 pfam08625, Utp13, Utp13 specific WD40 associated domai...  183     2e-54


>CDD:462540 pfam08625, Utp13, Utp13 specific WD40 associated domain.  Utp13 
is a component of the five protein Pwp2 complex that forms 
part of a stable particle subunit independent of the U3 small 
nucleolar ribonucleoprotein that is essential for the initial 
assembly steps of the 90S pre-ribosome. Pwp2 is capable 
of interacting directly with the 35 S pre-rRNA 5' end.
Length=139

 Score = 183 bits (467),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 70/165 (42%), Positives = 98/165 (59%), Gaps = 26/165 (16%)

Query  765  DQQLQNYIRAGAYREAITLALQLNHPARLLSIFTTAIDAADNPYSSDSDKDERVNSLTGD  824
            +Q+LQN +R   YREAI LAL LNHP RLL +F   + +AD+             S+TG 
Sbjct  1    EQELQNLLRNKDYREAILLALTLNHPHRLLKLFKALLTSADDE-----------GSITGL  49

Query  825  ASIDEVLQSLDPSNLRLLLLRLRDWNTNARTSRVAQRILYALFRSYPASTFVELATSSMA  884
              +DEV+++L    L  LL  +RDWNTNA+TS VAQR+L AL +SYP    +EL      
Sbjct  50   KELDEVIKTLSDEQLEKLLKYIRDWNTNAKTSHVAQRVLNALLKSYPPEELLEL------  103

Query  885  KRGSDRRTAAGMRDILQALAAYTERHYRRVEELTDESFLVEWVLG  929
                      G+++IL+AL  YTERH+ R++ L  ES+L+++ L 
Sbjct  104  ---------PGLKEILEALIPYTERHFSRLDRLVQESYLLDYTLQ  139



Lambda      K        H        a         alpha
   0.315    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1231812120


Query= TCONS_00034880

Length=893
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462540 pfam08625, Utp13, Utp13 specific WD40 associated domai...  183     2e-54


>CDD:462540 pfam08625, Utp13, Utp13 specific WD40 associated domain.  Utp13 
is a component of the five protein Pwp2 complex that forms 
part of a stable particle subunit independent of the U3 small 
nucleolar ribonucleoprotein that is essential for the initial 
assembly steps of the 90S pre-ribosome. Pwp2 is capable 
of interacting directly with the 35 S pre-rRNA 5' end.
Length=139

 Score = 183 bits (467),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 70/165 (42%), Positives = 98/165 (59%), Gaps = 26/165 (16%)

Query  692  DQQLQNYIRAGAYREAITLALQLNHPARLLSIFTTAIDAADNPYSSDSDKDERVNSLTGD  751
            +Q+LQN +R   YREAI LAL LNHP RLL +F   + +AD+             S+TG 
Sbjct  1    EQELQNLLRNKDYREAILLALTLNHPHRLLKLFKALLTSADDE-----------GSITGL  49

Query  752  ASIDEVLQSLDPSNLRLLLLRLRDWNTNARTSRVAQRILYALFRSYPASTFVELATSSMA  811
              +DEV+++L    L  LL  +RDWNTNA+TS VAQR+L AL +SYP    +EL      
Sbjct  50   KELDEVIKTLSDEQLEKLLKYIRDWNTNAKTSHVAQRVLNALLKSYPPEELLEL------  103

Query  812  KRGSDRRTAAGMRDILQALAAYTERHYRRVEELTDESFLVEWVLG  856
                      G+++IL+AL  YTERH+ R++ L  ES+L+++ L 
Sbjct  104  ---------PGLKEILEALIPYTERHFSRLDRLVQESYLLDYTLQ  139



Lambda      K        H        a         alpha
   0.315    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1145540172


Query= TCONS_00034881

Length=672
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372817 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain...  71.2    4e-16
CDD:462194 pfam07529, HSA, HSA. This domain is predicted to bind ...  57.6    3e-11


>CDD:372817 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain.  This 
family contains the DNA binding domains from Myb proteins, 
as well as the SANT domain family.
Length=60

 Score = 71.2 bits (175),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 23/72 (32%), Positives = 37/72 (51%), Gaps = 12/72 (17%)

Query  451  WTYAEDDELRRLVKEYSYNWSLISSCLTPSSQFTSGAERRTPWECFERWVGLEGLPADMS  510
            WT  ED++L +LV++Y  +W  I+  L           RRTP +CF+RW     L   +S
Sbjct  1    WTEEEDEKLLKLVEKYGNDWKQIAKELG----------RRTPKQCFDRW--RRKLNPKIS  48

Query  511  KTQYFRAYHQRI  522
            +  + +   QR+
Sbjct  49   RGPWSKEEDQRL  60


>CDD:462194 pfam07529, HSA, HSA.  This domain is predicted to bind DNA and 
is often found associated with helicases.
Length=67

 Score = 57.6 bits (140),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 28/46 (61%), Gaps = 1/46 (2%)

Query  181  VEPPR-QGTHWDVLLDHMKWMRTDYREERKWKIAAAKSCADWCAEY  225
             EP R + TH D LL+ + W   D+++ER+WK A AK  A   A+Y
Sbjct  2    DEPERREKTHHDYLLEEILWHSKDFKQERRWKRARAKKLARAVAQY  47



Lambda      K        H        a         alpha
   0.315    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 853903410


Query= TCONS_00034882

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C ter...  144     1e-42
CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...   99     6e-25
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  58.0    2e-11


>CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C terminal. 
 Members of this family, which are found in the initiation factors 
eIF2 and EF-Tu, adopt a structure consisting of a beta 
barrel with Greek key topology. They are required for formation 
of the ternary complex with GTP and initiator tRNA.
Length=86

 Score = 144 bits (367),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 58/90 (64%), Gaps = 4/90 (4%)

Query  416  TELEVNYFLLRRLLGVKTADGKQAKVAKLTKNEVLMVNIGSTATGAKVMGVKADAAKLSL  475
            TELE+ Y LL R++GVK     + KV  + K EVLM+N+G+  TG  V  VK D A++ L
Sbjct  1    TELEIEYHLLERVVGVKE----EKKVEPIKKGEVLMLNVGTATTGGVVTSVKKDEAEVEL  56

Query  476  TSPACTEIGEKIAISRRIDKHWRLIGWANI  505
              P C E GE++AISRRI   WRLIGW  I
Sbjct  57   KKPVCAEKGERVAISRRIGGRWRLIGWGII  86


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score =  99 bits (250),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 86/222 (39%), Gaps = 58/222 (26%)

Query  89   INIGTIGHVAHGKSTVV-------KAISEVQTVRFKNEL---------ERNITIKLGYAN  132
             NIG IGHV HGK+T+         AIS+   V+ + E          ER ITIK     
Sbjct  4    RNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSAAV-  62

Query  133  AKIYKCDNPGCPRPTCFKSYKSEKEIDPPCEREGCTGRYRLLRHVSFVDCPGHDILMSTM  192
                              S++++                     ++ +D PGH   +  +
Sbjct  63   ------------------SFETKD------------------YLINLIDTPGHVDFVKEV  86

Query  193  LSGAAVMDAALLLIAGNEACPQPQTSEHLAAIEIMKLSHIIILQNKVDLMRE---DGALQ  249
            + G A  D A+L++   E    PQT EHL     + +  II+  NK+D +     +  ++
Sbjct  87   IRGLAQADGAILVVDAVEG-VMPQTREHLRLARQLGV-PIIVFINKMDRVDGAELEEVVE  144

Query  250  HYQSILKFIRGTVADGSPIIPISAQLKYNIDAVNEYLVSHIP  291
                 L    G   +  P++P SA     +  + + L  ++P
Sbjct  145  EVSRELLEKYGEDGEFVPVVPGSALKGEGVQTLLDALDEYLP  186


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 58.0 bits (141),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 26/84 (31%), Positives = 33/84 (39%), Gaps = 11/84 (13%)

Query  323  GGVAGGSILTGVLKLNDEIEIRPGLVTKDENGKIQCRPIFSRVVSLFAEHNDLKFAVPGG  382
            G VA G + +G LK  D++ I P    K          I +RV SL   H  L+ AV G 
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKK--------KIVTRVTSLLMFHAPLREAVAGD  52

Query  383  LIGVGTRVDPTLCRADRLVGFVLG  406
              G+           D  VG  L 
Sbjct  53   NAGLILAGVG---LEDIRVGDTLT  73



Lambda      K        H        a         alpha
   0.318    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00030279

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C ter...  140     1e-42
CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  61.8    5e-12


>CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C terminal. 
 Members of this family, which are found in the initiation factors 
eIF2 and EF-Tu, adopt a structure consisting of a beta 
barrel with Greek key topology. They are required for formation 
of the ternary complex with GTP and initiator tRNA.
Length=86

 Score = 140 bits (355),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 59/90 (66%), Gaps = 4/90 (4%)

Query  228  TELEVNYFLLRRLLGVKTADGKQAKVAKLTKNEVLMVNIGSTATGAKVMGVKADAAKLSL  287
            TELE+ Y LL R++GVK    ++ KV  + K EVLM+N+G+  TG  V  VK D A++ L
Sbjct  1    TELEIEYHLLERVVGVK----EEKKVEPIKKGEVLMLNVGTATTGGVVTSVKKDEAEVEL  56

Query  288  TSPACTEIGEKIAISRRIDKHWRLIGWANI  317
              P C E GE++AISRRI   WRLIGW  I
Sbjct  57   KKPVCAEKGERVAISRRIGGRWRLIGWGII  86


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 61.8 bits (151),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 25/105 (24%), Positives = 46/105 (44%), Gaps = 5/105 (5%)

Query  2    STMLSGAAVMDAALLLIAGNEACPQPQTSEHLAAIEIMKLSHIIILQNKVDLMRE---DG  58
              ++ G A  D A+L++   E    PQT EHL     + +  II+  NK+D +     + 
Sbjct  84   KEVIRGLAQADGAILVVDAVEG-VMPQTREHLRLARQLGV-PIIVFINKMDRVDGAELEE  141

Query  59   ALQHYQSILKFIRGTVADGSPIIPISAQLKYNIDAVNEYLVSHIP  103
             ++     L    G   +  P++P SA     +  + + L  ++P
Sbjct  142  VVEEVSRELLEKYGEDGEFVPVVPGSALKGEGVQTLLDALDEYLP  186



Lambda      K        H        a         alpha
   0.321    0.138    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0902    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00034883

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C ter...  140     1e-42
CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  61.8    5e-12


>CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C terminal. 
 Members of this family, which are found in the initiation factors 
eIF2 and EF-Tu, adopt a structure consisting of a beta 
barrel with Greek key topology. They are required for formation 
of the ternary complex with GTP and initiator tRNA.
Length=86

 Score = 140 bits (355),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 59/90 (66%), Gaps = 4/90 (4%)

Query  228  TELEVNYFLLRRLLGVKTADGKQAKVAKLTKNEVLMVNIGSTATGAKVMGVKADAAKLSL  287
            TELE+ Y LL R++GVK    ++ KV  + K EVLM+N+G+  TG  V  VK D A++ L
Sbjct  1    TELEIEYHLLERVVGVK----EEKKVEPIKKGEVLMLNVGTATTGGVVTSVKKDEAEVEL  56

Query  288  TSPACTEIGEKIAISRRIDKHWRLIGWANI  317
              P C E GE++AISRRI   WRLIGW  I
Sbjct  57   KKPVCAEKGERVAISRRIGGRWRLIGWGII  86


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 61.8 bits (151),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 25/105 (24%), Positives = 46/105 (44%), Gaps = 5/105 (5%)

Query  2    STMLSGAAVMDAALLLIAGNEACPQPQTSEHLAAIEIMKLSHIIILQNKVDLMRE---DG  58
              ++ G A  D A+L++   E    PQT EHL     + +  II+  NK+D +     + 
Sbjct  84   KEVIRGLAQADGAILVVDAVEG-VMPQTREHLRLARQLGV-PIIVFINKMDRVDGAELEE  141

Query  59   ALQHYQSILKFIRGTVADGSPIIPISAQLKYNIDAVNEYLVSHIP  103
             ++     L    G   +  P++P SA     +  + + L  ++P
Sbjct  142  VVEEVSRELLEKYGEDGEFVPVVPGSALKGEGVQTLLDALDEYLP  186



Lambda      K        H        a         alpha
   0.320    0.138    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00030280

Length=320


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00034885

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C ter...  140     1e-42
CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  61.8    5e-12


>CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C terminal. 
 Members of this family, which are found in the initiation factors 
eIF2 and EF-Tu, adopt a structure consisting of a beta 
barrel with Greek key topology. They are required for formation 
of the ternary complex with GTP and initiator tRNA.
Length=86

 Score = 140 bits (355),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 59/90 (66%), Gaps = 4/90 (4%)

Query  228  TELEVNYFLLRRLLGVKTADGKQAKVAKLTKNEVLMVNIGSTATGAKVMGVKADAAKLSL  287
            TELE+ Y LL R++GVK    ++ KV  + K EVLM+N+G+  TG  V  VK D A++ L
Sbjct  1    TELEIEYHLLERVVGVK----EEKKVEPIKKGEVLMLNVGTATTGGVVTSVKKDEAEVEL  56

Query  288  TSPACTEIGEKIAISRRIDKHWRLIGWANI  317
              P C E GE++AISRRI   WRLIGW  I
Sbjct  57   KKPVCAEKGERVAISRRIGGRWRLIGWGII  86


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 61.8 bits (151),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 25/105 (24%), Positives = 46/105 (44%), Gaps = 5/105 (5%)

Query  2    STMLSGAAVMDAALLLIAGNEACPQPQTSEHLAAIEIMKLSHIIILQNKVDLMRE---DG  58
              ++ G A  D A+L++   E    PQT EHL     + +  II+  NK+D +     + 
Sbjct  84   KEVIRGLAQADGAILVVDAVEG-VMPQTREHLRLARQLGV-PIIVFINKMDRVDGAELEE  141

Query  59   ALQHYQSILKFIRGTVADGSPIIPISAQLKYNIDAVNEYLVSHIP  103
             ++     L    G   +  P++P SA     +  + + L  ++P
Sbjct  142  VVEEVSRELLEKYGEDGEFVPVVPGSALKGEGVQTLLDALDEYLP  186



Lambda      K        H        a         alpha
   0.320    0.138    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00030281

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C ter...  144     8e-43
CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...   99     6e-25
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  58.0    2e-11


>CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C terminal. 
 Members of this family, which are found in the initiation factors 
eIF2 and EF-Tu, adopt a structure consisting of a beta 
barrel with Greek key topology. They are required for formation 
of the ternary complex with GTP and initiator tRNA.
Length=86

 Score = 144 bits (367),  Expect = 8e-43, Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 58/90 (64%), Gaps = 4/90 (4%)

Query  416  TELEVNYFLLRRLLGVKTADGKQAKVAKLTKNEVLMVNIGSTATGAKVMGVKADAAKLSL  475
            TELE+ Y LL R++GVK     + KV  + K EVLM+N+G+  TG  V  VK D A++ L
Sbjct  1    TELEIEYHLLERVVGVKE----EKKVEPIKKGEVLMLNVGTATTGGVVTSVKKDEAEVEL  56

Query  476  TSPACTEIGEKIAISRRIDKHWRLIGWANI  505
              P C E GE++AISRRI   WRLIGW  I
Sbjct  57   KKPVCAEKGERVAISRRIGGRWRLIGWGII  86


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score =  99 bits (250),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 86/222 (39%), Gaps = 58/222 (26%)

Query  89   INIGTIGHVAHGKSTVV-------KAISEVQTVRFKNEL---------ERNITIKLGYAN  132
             NIG IGHV HGK+T+         AIS+   V+ + E          ER ITIK     
Sbjct  4    RNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSAAV-  62

Query  133  AKIYKCDNPGCPRPTCFKSYKSEKEIDPPCEREGCTGRYRLLRHVSFVDCPGHDILMSTM  192
                              S++++                     ++ +D PGH   +  +
Sbjct  63   ------------------SFETKD------------------YLINLIDTPGHVDFVKEV  86

Query  193  LSGAAVMDAALLLIAGNEACPQPQTSEHLAAIEIMKLSHIIILQNKVDLMRE---DGALQ  249
            + G A  D A+L++   E    PQT EHL     + +  II+  NK+D +     +  ++
Sbjct  87   IRGLAQADGAILVVDAVEG-VMPQTREHLRLARQLGV-PIIVFINKMDRVDGAELEEVVE  144

Query  250  HYQSILKFIRGTVADGSPIIPISAQLKYNIDAVNEYLVSHIP  291
                 L    G   +  P++P SA     +  + + L  ++P
Sbjct  145  EVSRELLEKYGEDGEFVPVVPGSALKGEGVQTLLDALDEYLP  186


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 58.0 bits (141),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 26/84 (31%), Positives = 33/84 (39%), Gaps = 11/84 (13%)

Query  323  GGVAGGSILTGVLKLNDEIEIRPGLVTKDENGKIQCRPIFSRVVSLFAEHNDLKFAVPGG  382
            G VA G + +G LK  D++ I P    K          I +RV SL   H  L+ AV G 
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKK--------KIVTRVTSLLMFHAPLREAVAGD  52

Query  383  LIGVGTRVDPTLCRADRLVGFVLG  406
              G+           D  VG  L 
Sbjct  53   NAGLILAGVG---LEDIRVGDTLT  73



Lambda      K        H        a         alpha
   0.318    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00030282

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C ter...  144     1e-42
CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...   99     6e-25
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  58.0    2e-11


>CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C terminal. 
 Members of this family, which are found in the initiation factors 
eIF2 and EF-Tu, adopt a structure consisting of a beta 
barrel with Greek key topology. They are required for formation 
of the ternary complex with GTP and initiator tRNA.
Length=86

 Score = 144 bits (367),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 58/90 (64%), Gaps = 4/90 (4%)

Query  416  TELEVNYFLLRRLLGVKTADGKQAKVAKLTKNEVLMVNIGSTATGAKVMGVKADAAKLSL  475
            TELE+ Y LL R++GVK     + KV  + K EVLM+N+G+  TG  V  VK D A++ L
Sbjct  1    TELEIEYHLLERVVGVKE----EKKVEPIKKGEVLMLNVGTATTGGVVTSVKKDEAEVEL  56

Query  476  TSPACTEIGEKIAISRRIDKHWRLIGWANI  505
              P C E GE++AISRRI   WRLIGW  I
Sbjct  57   KKPVCAEKGERVAISRRIGGRWRLIGWGII  86


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score =  99 bits (250),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 86/222 (39%), Gaps = 58/222 (26%)

Query  89   INIGTIGHVAHGKSTVV-------KAISEVQTVRFKNEL---------ERNITIKLGYAN  132
             NIG IGHV HGK+T+         AIS+   V+ + E          ER ITIK     
Sbjct  4    RNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSAAV-  62

Query  133  AKIYKCDNPGCPRPTCFKSYKSEKEIDPPCEREGCTGRYRLLRHVSFVDCPGHDILMSTM  192
                              S++++                     ++ +D PGH   +  +
Sbjct  63   ------------------SFETKD------------------YLINLIDTPGHVDFVKEV  86

Query  193  LSGAAVMDAALLLIAGNEACPQPQTSEHLAAIEIMKLSHIIILQNKVDLMRE---DGALQ  249
            + G A  D A+L++   E    PQT EHL     + +  II+  NK+D +     +  ++
Sbjct  87   IRGLAQADGAILVVDAVEG-VMPQTREHLRLARQLGV-PIIVFINKMDRVDGAELEEVVE  144

Query  250  HYQSILKFIRGTVADGSPIIPISAQLKYNIDAVNEYLVSHIP  291
                 L    G   +  P++P SA     +  + + L  ++P
Sbjct  145  EVSRELLEKYGEDGEFVPVVPGSALKGEGVQTLLDALDEYLP  186


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 58.0 bits (141),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 26/84 (31%), Positives = 33/84 (39%), Gaps = 11/84 (13%)

Query  323  GGVAGGSILTGVLKLNDEIEIRPGLVTKDENGKIQCRPIFSRVVSLFAEHNDLKFAVPGG  382
            G VA G + +G LK  D++ I P    K          I +RV SL   H  L+ AV G 
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKK--------KIVTRVTSLLMFHAPLREAVAGD  52

Query  383  LIGVGTRVDPTLCRADRLVGFVLG  406
              G+           D  VG  L 
Sbjct  53   NAGLILAGVG---LEDIRVGDTLT  73



Lambda      K        H        a         alpha
   0.318    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00030284

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C ter...  144     1e-42
CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...   99     6e-25
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  58.0    2e-11


>CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C terminal. 
 Members of this family, which are found in the initiation factors 
eIF2 and EF-Tu, adopt a structure consisting of a beta 
barrel with Greek key topology. They are required for formation 
of the ternary complex with GTP and initiator tRNA.
Length=86

 Score = 144 bits (367),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 58/90 (64%), Gaps = 4/90 (4%)

Query  416  TELEVNYFLLRRLLGVKTADGKQAKVAKLTKNEVLMVNIGSTATGAKVMGVKADAAKLSL  475
            TELE+ Y LL R++GVK     + KV  + K EVLM+N+G+  TG  V  VK D A++ L
Sbjct  1    TELEIEYHLLERVVGVKE----EKKVEPIKKGEVLMLNVGTATTGGVVTSVKKDEAEVEL  56

Query  476  TSPACTEIGEKIAISRRIDKHWRLIGWANI  505
              P C E GE++AISRRI   WRLIGW  I
Sbjct  57   KKPVCAEKGERVAISRRIGGRWRLIGWGII  86


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score =  99 bits (250),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 86/222 (39%), Gaps = 58/222 (26%)

Query  89   INIGTIGHVAHGKSTVV-------KAISEVQTVRFKNEL---------ERNITIKLGYAN  132
             NIG IGHV HGK+T+         AIS+   V+ + E          ER ITIK     
Sbjct  4    RNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSAAV-  62

Query  133  AKIYKCDNPGCPRPTCFKSYKSEKEIDPPCEREGCTGRYRLLRHVSFVDCPGHDILMSTM  192
                              S++++                     ++ +D PGH   +  +
Sbjct  63   ------------------SFETKD------------------YLINLIDTPGHVDFVKEV  86

Query  193  LSGAAVMDAALLLIAGNEACPQPQTSEHLAAIEIMKLSHIIILQNKVDLMRE---DGALQ  249
            + G A  D A+L++   E    PQT EHL     + +  II+  NK+D +     +  ++
Sbjct  87   IRGLAQADGAILVVDAVEG-VMPQTREHLRLARQLGV-PIIVFINKMDRVDGAELEEVVE  144

Query  250  HYQSILKFIRGTVADGSPIIPISAQLKYNIDAVNEYLVSHIP  291
                 L    G   +  P++P SA     +  + + L  ++P
Sbjct  145  EVSRELLEKYGEDGEFVPVVPGSALKGEGVQTLLDALDEYLP  186


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 58.0 bits (141),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 26/84 (31%), Positives = 33/84 (39%), Gaps = 11/84 (13%)

Query  323  GGVAGGSILTGVLKLNDEIEIRPGLVTKDENGKIQCRPIFSRVVSLFAEHNDLKFAVPGG  382
            G VA G + +G LK  D++ I P    K          I +RV SL   H  L+ AV G 
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKK--------KIVTRVTSLLMFHAPLREAVAGD  52

Query  383  LIGVGTRVDPTLCRADRLVGFVLG  406
              G+           D  VG  L 
Sbjct  53   NAGLILAGVG---LEDIRVGDTLT  73



Lambda      K        H        a         alpha
   0.318    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00030285

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C ter...  144     1e-42
CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...   99     6e-25
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  58.0    2e-11


>CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C terminal. 
 Members of this family, which are found in the initiation factors 
eIF2 and EF-Tu, adopt a structure consisting of a beta 
barrel with Greek key topology. They are required for formation 
of the ternary complex with GTP and initiator tRNA.
Length=86

 Score = 144 bits (367),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 58/90 (64%), Gaps = 4/90 (4%)

Query  416  TELEVNYFLLRRLLGVKTADGKQAKVAKLTKNEVLMVNIGSTATGAKVMGVKADAAKLSL  475
            TELE+ Y LL R++GVK     + KV  + K EVLM+N+G+  TG  V  VK D A++ L
Sbjct  1    TELEIEYHLLERVVGVKE----EKKVEPIKKGEVLMLNVGTATTGGVVTSVKKDEAEVEL  56

Query  476  TSPACTEIGEKIAISRRIDKHWRLIGWANI  505
              P C E GE++AISRRI   WRLIGW  I
Sbjct  57   KKPVCAEKGERVAISRRIGGRWRLIGWGII  86


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score =  99 bits (250),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 86/222 (39%), Gaps = 58/222 (26%)

Query  89   INIGTIGHVAHGKSTVV-------KAISEVQTVRFKNEL---------ERNITIKLGYAN  132
             NIG IGHV HGK+T+         AIS+   V+ + E          ER ITIK     
Sbjct  4    RNIGIIGHVDHGKTTLTDRLLYYTGAISKRGEVKGEGEAGLDNLPEERERGITIKSAAV-  62

Query  133  AKIYKCDNPGCPRPTCFKSYKSEKEIDPPCEREGCTGRYRLLRHVSFVDCPGHDILMSTM  192
                              S++++                     ++ +D PGH   +  +
Sbjct  63   ------------------SFETKD------------------YLINLIDTPGHVDFVKEV  86

Query  193  LSGAAVMDAALLLIAGNEACPQPQTSEHLAAIEIMKLSHIIILQNKVDLMRE---DGALQ  249
            + G A  D A+L++   E    PQT EHL     + +  II+  NK+D +     +  ++
Sbjct  87   IRGLAQADGAILVVDAVEG-VMPQTREHLRLARQLGV-PIIVFINKMDRVDGAELEEVVE  144

Query  250  HYQSILKFIRGTVADGSPIIPISAQLKYNIDAVNEYLVSHIP  291
                 L    G   +  P++P SA     +  + + L  ++P
Sbjct  145  EVSRELLEKYGEDGEFVPVVPGSALKGEGVQTLLDALDEYLP  186


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 58.0 bits (141),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 26/84 (31%), Positives = 33/84 (39%), Gaps = 11/84 (13%)

Query  323  GGVAGGSILTGVLKLNDEIEIRPGLVTKDENGKIQCRPIFSRVVSLFAEHNDLKFAVPGG  382
            G VA G + +G LK  D++ I P    K          I +RV SL   H  L+ AV G 
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKK--------KIVTRVTSLLMFHAPLREAVAGD  52

Query  383  LIGVGTRVDPTLCRADRLVGFVLG  406
              G+           D  VG  L 
Sbjct  53   NAGLILAGVG---LEDIRVGDTLT  73



Lambda      K        H        a         alpha
   0.318    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00034886

Length=66
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C ter...  95.6    1e-28


>CDD:462703 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C terminal. 
 Members of this family, which are found in the initiation factors 
eIF2 and EF-Tu, adopt a structure consisting of a beta 
barrel with Greek key topology. They are required for formation 
of the ternary complex with GTP and initiator tRNA.
Length=86

 Score = 95.6 bits (239),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 29/55 (53%), Positives = 36/55 (65%), Gaps = 0/55 (0%)

Query  1   MVNIGSTATGAKVMGVKADAAKLSLTSPACTEIGEKIAISRRIDKHWRLIGWANI  55
           M+N+G+  TG  V  VK D A++ L  P C E GE++AISRRI   WRLIGW  I
Sbjct  32  MLNVGTATTGGVVTSVKKDEAEVELKKPVCAEKGERVAISRRIGGRWRLIGWGII  86



Lambda      K        H        a         alpha
   0.317    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00030286

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465138 pfam16491, Peptidase_M48_N, CAAX prenyl protease N-ter...  242     2e-79
CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  148     8e-43


>CDD:465138 pfam16491, Peptidase_M48_N, CAAX prenyl protease N-terminal, 
five membrane helices.  The five N-terminal five transmembrane 
alpha-helices of peptidase_M48 family proteins including 
the CAAX prenyl proteases reside completely within the membrane 
of the endoplasmic reticulum.
Length=179

 Score = 242 bits (620),  Expect = 2e-79, Method: Composition-based stats.
 Identities = 90/186 (48%), Positives = 128/186 (69%), Gaps = 8/186 (4%)

Query  49   QYKVLQRTK-PPKVLENEVSQKVFDQSQAYGRAKAKFGFISGLYGQIQNLAFIYGDVLPK  107
            QY+ L+R +  P+ L + + Q+ F +SQ Y  AK++F  +S L+  I  LAF+    LP 
Sbjct  1    QYRHLKRHRDVPEELADIIDQETFQKSQDYTLAKSRFSLVSSLFSLILLLAFLLFGGLPW  60

Query  108  LWGLSGLLLARYFPSRFQGEISQTLLFIFGFNLISTVLSLPVSYYNTFVLEEKFGFNKQT  167
            LW LSG LL+       + EI Q+L F+   +LIST++SLP S Y+TFV+EEKFGFNKQT
Sbjct  61   LWNLSGSLLS-------ESEILQSLAFLLILSLISTLISLPFSLYSTFVIEEKFGFNKQT  113

Query  168  LKLWVTDMLKGQMLGIVLGTPIISAVLKIVQKTGNSFFYYLWLFGVFVQIFAITIYPIVI  227
             KL++TD+LK  +L +VLG P+++A+L I+QK G+ F+ YLWLF +  Q+  +TIYP +I
Sbjct  114  PKLFITDLLKSLLLSLVLGGPLLAAILWIIQKAGDYFWLYLWLFWLVFQLLLMTIYPTLI  173

Query  228  LPLFNK  233
             PLFNK
Sbjct  174  APLFNK  179


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 148 bits (375),  Expect = 8e-43, Method: Composition-based stats.
 Identities = 60/209 (29%), Positives = 89/209 (43%), Gaps = 17/209 (8%)

Query  236  PLEPGELKTGVESLARKLKFPLHELYVIDGSKRSAHSNAYFYGLPWKKHIVIYDTLIEKS  295
            PL   EL+  VE LA     P    + +   K S   NA+ YGL     +V+   L++  
Sbjct  1    PLRNAELQRVVERLAAAAGLP-LPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLL  59

Query  296  ETE-EVVAVLSHELGHWSLGHTTKLFAIAQSHMFYIFALFS-VFVNNKSLYQSFGFHQEM  353
            ETE E+ AVL HE+GH    H+ +  +I          L   +     S + +FG     
Sbjct  60   ETEDELAAVLGHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFG-----  114

Query  354  PIMIGFLLFSDALAPMDAVVKLLMNVLSRKFEFEADAFAVKLGYSEQLAAS-LLKLQ--I  410
                  ++F   + P+ A++ LL+   SR  E+EAD    +L          L+KL   I
Sbjct  115  ------IIFLLLIGPLAALLTLLLLPYSRAQEYEADRLGAELMARAGYDPRALIKLWGEI  168

Query  411  QNLSTMDADWMYASYHYSHPILTERLKAL  439
             N        +Y     +HP L ER+ AL
Sbjct  169  DNNGRASDGALYPELLSTHPSLVERIAAL  197



Lambda      K        H        a         alpha
   0.325    0.141    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 575139000


Query= TCONS_00034889

Length=133
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425699 pfam00468, Ribosomal_L34, Ribosomal protein L34            61.6    1e-14


>CDD:425699 pfam00468, Ribosomal_L34, Ribosomal protein L34.  
Length=42

 Score = 61.6 bits (151),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 33/40 (83%), Gaps = 0/40 (0%)

Query  93   TYNPSRRVQKRRHGFLARLRSRGGRKVLQHRRAKGRKSLS  132
            TY PS R +KR+HGF AR+R++ GRKVL+ RRAKGRK L+
Sbjct  3    TYQPSNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT  42



Lambda      K        H        a         alpha
   0.319    0.125    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00030290

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.141    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00034890

Length=634


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 797861390


Query= TCONS_00030287

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425699 pfam00468, Ribosomal_L34, Ribosomal protein L34            61.6    1e-14


>CDD:425699 pfam00468, Ribosomal_L34, Ribosomal protein L34.  
Length=42

 Score = 61.6 bits (151),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 33/40 (83%), Gaps = 0/40 (0%)

Query  96   TYNPSRRVQKRRHGFLARLRSRGGRKVLQHRRAKGRKSLS  135
            TY PS R +KR+HGF AR+R++ GRKVL+ RRAKGRK L+
Sbjct  3    TYQPSNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT  42



Lambda      K        H        a         alpha
   0.318    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00030288

Length=634


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 797861390


Query= TCONS_00034891

Length=634


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 797861390


Query= TCONS_00030292

Length=634


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 797861390


Query= TCONS_00034892

Length=676


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 859802570


Query= TCONS_00030293

Length=295


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00034893

Length=558


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 696403448


Query= TCONS_00030294

Length=599


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 757674996


Query= TCONS_00030295

Length=828


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1052231762


Query= TCONS_00034894

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462380 pfam08154, NLE, NLE (NUC135) domain. This domain is lo...  96.8    2e-25


>CDD:462380 pfam08154, NLE, NLE (NUC135) domain.  This domain is located 
N terminal to WD40 repeats. It is found in the microtubule-associated 
yeast ribosome biogenesis protein YTM1.
Length=66

 Score = 96.8 bits (242),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 36/68 (53%), Positives = 50/68 (74%), Gaps = 5/68 (7%)

Query  20  VRVQLTSKQEDIALPDNTGPILVPTSLRRYALSTLVNKLLGND---KPIPFEFLINGTFL  76
           V+V+  +K+ ++A+P    P+ VP SL RY LS LVN LL N+   KP+PF+FLING FL
Sbjct  1   VQVRFVTKEGELAVPGT--PLDVPVSLTRYQLSELVNSLLKNEELEKPVPFDFLINGEFL  58

Query  77  RTSIDEYL  84
           RTS++E+L
Sbjct  59  RTSLEEHL  66



Lambda      K        H        a         alpha
   0.312    0.126    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 601084202


Query= TCONS_00030297

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  186     1e-60


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 186 bits (474),  Expect = 1e-60, Method: Composition-based stats.
 Identities = 84/151 (56%), Positives = 103/151 (68%), Gaps = 12/151 (8%)

Query  49   LGRIVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKSFMIQGGDFTRGDGTGGK  108
            LGRIV+ L+G   PKT ENF  L    KGF Y+G+TFHRVI  FM+QGGD T G G GGK
Sbjct  6    LGRIVIELFGDKAPKTVENFLQLCK--KGF-YDGTTFHRVIPGFMVQGGDPT-GTGGGGK  61

Query  109  SIYGEKFADENF--KLRHTRKGLLSMANAG--KDTNGSQFFITTVPTPWLDGRHVVFGEV  164
            SI+     DE F   L+H R G LSMAN G   ++NGSQFFIT  P P LDG++ VFG+V
Sbjct  62   SIFP--IPDEIFPLLLKHKR-GALSMANTGPAPNSNGSQFFITLGPAPHLDGKYTVFGKV  118

Query  165  LEGYEVVEQIENVPKGPGDKPAETVKIVKSG  195
            +EG +V+E+IE VP   GD+P + VKI+  G
Sbjct  119  VEGMDVLEKIEKVPTD-GDRPVKPVKILSCG  148



Lambda      K        H        a         alpha
   0.317    0.138    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0841    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00030298

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  100     3e-28


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 100 bits (252),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 49/87 (56%), Positives = 56/87 (64%), Gaps = 9/87 (10%)

Query  49   LGRIVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKSFMIQGGDFTRGDGTGGK  108
            LGRIV+ L+G   PKT ENF  L    KGF Y+G+TFHRVI  FM+QGGD T G G GGK
Sbjct  6    LGRIVIELFGDKAPKTVENFLQLCK--KGF-YDGTTFHRVIPGFMVQGGDPT-GTGGGGK  61

Query  109  SIYGEKFADENF--KLRHTRKGLLSTA  133
            SI+     DE F   L+H R G LS A
Sbjct  62   SIFP--IPDEIFPLLLKHKR-GALSMA  85



Lambda      K        H        a         alpha
   0.323    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00030299

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  183     3e-60


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 183 bits (468),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 84/151 (56%), Positives = 103/151 (68%), Gaps = 12/151 (8%)

Query  49   LGRIVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKSFMIQGGDFTRGDGTGGK  108
            LGRIV+ L+G   PKT ENF  L    KGF Y+G+TFHRVI  FM+QGGD T G G GGK
Sbjct  6    LGRIVIELFGDKAPKTVENFLQLCK--KGF-YDGTTFHRVIPGFMVQGGDPT-GTGGGGK  61

Query  109  SIYGEKFADENF--KLRHTRKGLLSMANAG--KDTNGSQFFITTVPTPWLDGRHVVFGEV  164
            SI+     DE F   L+H R G LSMAN G   ++NGSQFFIT  P P LDG++ VFG+V
Sbjct  62   SIFP--IPDEIFPLLLKHKR-GALSMANTGPAPNSNGSQFFITLGPAPHLDGKYTVFGKV  118

Query  165  LEGYEVVEQIENVPKGPGDKPAETVKIVKSG  195
            +EG +V+E+IE VP   GD+P + VKI+  G
Sbjct  119  VEGMDVLEKIEKVPTD-GDRPVKPVKILSCG  148



Lambda      K        H        a         alpha
   0.317    0.139    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00034895

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  183     3e-60


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 183 bits (468),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 84/151 (56%), Positives = 103/151 (68%), Gaps = 12/151 (8%)

Query  49   LGRIVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKSFMIQGGDFTRGDGTGGK  108
            LGRIV+ L+G   PKT ENF  L    KGF Y+G+TFHRVI  FM+QGGD T G G GGK
Sbjct  6    LGRIVIELFGDKAPKTVENFLQLCK--KGF-YDGTTFHRVIPGFMVQGGDPT-GTGGGGK  61

Query  109  SIYGEKFADENF--KLRHTRKGLLSMANAG--KDTNGSQFFITTVPTPWLDGRHVVFGEV  164
            SI+     DE F   L+H R G LSMAN G   ++NGSQFFIT  P P LDG++ VFG+V
Sbjct  62   SIFP--IPDEIFPLLLKHKR-GALSMANTGPAPNSNGSQFFITLGPAPHLDGKYTVFGKV  118

Query  165  LEGYEVVEQIENVPKGPGDKPAETVKIVKSG  195
            +EG +V+E+IE VP   GD+P + VKI+  G
Sbjct  119  VEGMDVLEKIEKVPTD-GDRPVKPVKILSCG  148



Lambda      K        H        a         alpha
   0.317    0.139    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00030301

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  91.5    3e-25


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 91.5 bits (228),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 47/84 (56%), Positives = 54/84 (64%), Gaps = 9/84 (11%)

Query  49   LGRIVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKSFMIQGGDFTRGDGTGGK  108
            LGRIV+ L+G   PKT ENF  L    KGF Y+G+TFHRVI  FM+QGGD T G G GGK
Sbjct  6    LGRIVIELFGDKAPKTVENFLQLCK--KGF-YDGTTFHRVIPGFMVQGGDPT-GTGGGGK  61

Query  109  SIYGEKFADENF--KLRHTRKGLL  130
            SI+     DE F   L+H R G L
Sbjct  62   SIFP--IPDEIFPLLLKHKR-GAL  82



Lambda      K        H        a         alpha
   0.323    0.143    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00034896

Length=577
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  187     6e-57
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  140     2e-40


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 187 bits (476),  Expect = 6e-57, Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 27/191 (14%)

Query  115  TPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQASGQFGYGRQ  174
            TP+Q  +IP ++ GRD++  A TGSGKT  FL P L                       +
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL-------------------DK  41

Query  175  RKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVA  234
                P +L+LAPTREL  QI++E +K      ++   + GG     QL ++ +G D+LV 
Sbjct  42   LDNGPQALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVG  100

Query  235  TPGRLVDLI-ERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMF  293
            TPGRL+DL+ ER  +   N+K LVLDEA R+LDMGF P +  I+    +P   +RQ L+ 
Sbjct  101  TPGRLLDLLQERKLLK--NLKLLVLDEAHRLLDMGFGPDLEEIL--RRLP--KKRQILLL  154

Query  294  SATFPRDIQML  304
            SAT PR+++ L
Sbjct  155  SATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 140 bits (355),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 53/112 (47%), Positives = 69/112 (62%), Gaps = 4/112 (4%)

Query  338  DKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQR-FPATAIHGDRTQRERERAL  396
            +K   LL++L      G  LIF +TK+  +A  + LL +       +HGD +Q ERE  L
Sbjct  1    EKLEALLELLKKE-RGGKVLIFSQTKKTLEA--ELLLEKEGIKVARLHGDLSQEEREEIL  57

Query  397  EMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAG  448
            E FR G+  +LVAT VA RGLD+P+V  VINYDLP +   Y+ RIGR GRAG
Sbjct  58   EDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.318    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 724797580


Query= TCONS_00030304

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  187     8e-57
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  141     1e-40


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 187 bits (478),  Expect = 8e-57, Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 27/191 (14%)

Query  189  TPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQASGQFGYGRQ  248
            TP+Q  +IP ++ GRD++  A TGSGKT  FL P L                       +
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL-------------------DK  41

Query  249  RKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVA  308
                P +L+LAPTREL  QI++E +K      ++   + GG     QL ++ +G D+LV 
Sbjct  42   LDNGPQALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVG  100

Query  309  TPGRLVDLI-ERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMF  367
            TPGRL+DL+ ER  +   N+K LVLDEA R+LDMGF P +  I+    +P   +RQ L+ 
Sbjct  101  TPGRLLDLLQERKLLK--NLKLLVLDEAHRLLDMGFGPDLEEIL--RRLP--KKRQILLL  154

Query  368  SATFPRDIQML  378
            SAT PR+++ L
Sbjct  155  SATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 141 bits (358),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 53/112 (47%), Positives = 69/112 (62%), Gaps = 4/112 (4%)

Query  412  DKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQR-FPATAIHGDRTQRERERAL  470
            +K   LL++L      G  LIF +TK+  +A  + LL +       +HGD +Q ERE  L
Sbjct  1    EKLEALLELLKKE-RGGKVLIFSQTKKTLEA--ELLLEKEGIKVARLHGDLSQEEREEIL  57

Query  471  EMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAG  522
            E FR G+  +LVAT VA RGLD+P+V  VINYDLP +   Y+ RIGR GRAG
Sbjct  58   EDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 822932820


Query= TCONS_00030303

Length=674
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  187     1e-56
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  142     1e-40


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 187 bits (478),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 27/191 (14%)

Query  212  TPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQASGQFGYGRQ  271
            TP+Q  +IP ++ GRD++  A TGSGKT  FL P L                       +
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL-------------------DK  41

Query  272  RKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVA  331
                P +L+LAPTREL  QI++E +K      ++   + GG     QL ++ +G D+LV 
Sbjct  42   LDNGPQALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVG  100

Query  332  TPGRLVDLI-ERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMF  390
            TPGRL+DL+ ER  +   N+K LVLDEA R+LDMGF P +  I+    +P   +RQ L+ 
Sbjct  101  TPGRLLDLLQERKLLK--NLKLLVLDEAHRLLDMGFGPDLEEIL--RRLP--KKRQILLL  154

Query  391  SATFPRDIQML  401
            SAT PR+++ L
Sbjct  155  SATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 142 bits (360),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 53/112 (47%), Positives = 69/112 (62%), Gaps = 4/112 (4%)

Query  435  DKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQR-FPATAIHGDRTQRERERAL  493
            +K   LL++L      G  LIF +TK+  +A  + LL +       +HGD +Q ERE  L
Sbjct  1    EKLEALLELLKKE-RGGKVLIFSQTKKTLEA--ELLLEKEGIKVARLHGDLSQEEREEIL  57

Query  494  EMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAG  545
            E FR G+  +LVAT VA RGLD+P+V  VINYDLP +   Y+ RIGR GRAG
Sbjct  58   EDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 856852990


Query= TCONS_00030302

Length=674
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  187     1e-56
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  142     1e-40


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 187 bits (478),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 27/191 (14%)

Query  212  TPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQASGQFGYGRQ  271
            TP+Q  +IP ++ GRD++  A TGSGKT  FL P L                       +
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL-------------------DK  41

Query  272  RKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVA  331
                P +L+LAPTREL  QI++E +K      ++   + GG     QL ++ +G D+LV 
Sbjct  42   LDNGPQALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVG  100

Query  332  TPGRLVDLI-ERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMF  390
            TPGRL+DL+ ER  +   N+K LVLDEA R+LDMGF P +  I+    +P   +RQ L+ 
Sbjct  101  TPGRLLDLLQERKLLK--NLKLLVLDEAHRLLDMGFGPDLEEIL--RRLP--KKRQILLL  154

Query  391  SATFPRDIQML  401
            SAT PR+++ L
Sbjct  155  SATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 142 bits (360),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 53/112 (47%), Positives = 69/112 (62%), Gaps = 4/112 (4%)

Query  435  DKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQR-FPATAIHGDRTQRERERAL  493
            +K   LL++L      G  LIF +TK+  +A  + LL +       +HGD +Q ERE  L
Sbjct  1    EKLEALLELLKKE-RGGKVLIFSQTKKTLEA--ELLLEKEGIKVARLHGDLSQEEREEIL  57

Query  494  EMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAG  545
            E FR G+  +LVAT VA RGLD+P+V  VINYDLP +   Y+ RIGR GRAG
Sbjct  58   EDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 856852990


Query= TCONS_00034898

Length=674
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  187     1e-56
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  142     1e-40


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 187 bits (478),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 27/191 (14%)

Query  212  TPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQASGQFGYGRQ  271
            TP+Q  +IP ++ GRD++  A TGSGKT  FL P L                       +
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL-------------------DK  41

Query  272  RKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVA  331
                P +L+LAPTREL  QI++E +K      ++   + GG     QL ++ +G D+LV 
Sbjct  42   LDNGPQALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVG  100

Query  332  TPGRLVDLI-ERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMF  390
            TPGRL+DL+ ER  +   N+K LVLDEA R+LDMGF P +  I+    +P   +RQ L+ 
Sbjct  101  TPGRLLDLLQERKLLK--NLKLLVLDEAHRLLDMGFGPDLEEIL--RRLP--KKRQILLL  154

Query  391  SATFPRDIQML  401
            SAT PR+++ L
Sbjct  155  SATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 142 bits (360),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 53/112 (47%), Positives = 69/112 (62%), Gaps = 4/112 (4%)

Query  435  DKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQR-FPATAIHGDRTQRERERAL  493
            +K   LL++L      G  LIF +TK+  +A  + LL +       +HGD +Q ERE  L
Sbjct  1    EKLEALLELLKKE-RGGKVLIFSQTKKTLEA--ELLLEKEGIKVARLHGDLSQEEREEIL  57

Query  494  EMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAG  545
            E FR G+  +LVAT VA RGLD+P+V  VINYDLP +   Y+ RIGR GRAG
Sbjct  58   EDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 856852990


Query= TCONS_00034897

Length=674
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  187     1e-56
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  142     1e-40


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 187 bits (478),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 27/191 (14%)

Query  212  TPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQASGQFGYGRQ  271
            TP+Q  +IP ++ GRD++  A TGSGKT  FL P L                       +
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL-------------------DK  41

Query  272  RKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVA  331
                P +L+LAPTREL  QI++E +K      ++   + GG     QL ++ +G D+LV 
Sbjct  42   LDNGPQALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVG  100

Query  332  TPGRLVDLI-ERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMF  390
            TPGRL+DL+ ER  +   N+K LVLDEA R+LDMGF P +  I+    +P   +RQ L+ 
Sbjct  101  TPGRLLDLLQERKLLK--NLKLLVLDEAHRLLDMGFGPDLEEIL--RRLP--KKRQILLL  154

Query  391  SATFPRDIQML  401
            SAT PR+++ L
Sbjct  155  SATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 142 bits (360),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 53/112 (47%), Positives = 69/112 (62%), Gaps = 4/112 (4%)

Query  435  DKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQR-FPATAIHGDRTQRERERAL  493
            +K   LL++L      G  LIF +TK+  +A  + LL +       +HGD +Q ERE  L
Sbjct  1    EKLEALLELLKKE-RGGKVLIFSQTKKTLEA--ELLLEKEGIKVARLHGDLSQEEREEIL  57

Query  494  EMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAG  545
            E FR G+  +LVAT VA RGLD+P+V  VINYDLP +   Y+ RIGR GRAG
Sbjct  58   EDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 856852990


Query= TCONS_00034899

Length=674
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  187     1e-56
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  142     1e-40


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 187 bits (478),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 27/191 (14%)

Query  212  TPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQASGQFGYGRQ  271
            TP+Q  +IP ++ GRD++  A TGSGKT  FL P L                       +
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL-------------------DK  41

Query  272  RKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVA  331
                P +L+LAPTREL  QI++E +K      ++   + GG     QL ++ +G D+LV 
Sbjct  42   LDNGPQALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVG  100

Query  332  TPGRLVDLI-ERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMF  390
            TPGRL+DL+ ER  +   N+K LVLDEA R+LDMGF P +  I+    +P   +RQ L+ 
Sbjct  101  TPGRLLDLLQERKLLK--NLKLLVLDEAHRLLDMGFGPDLEEIL--RRLP--KKRQILLL  154

Query  391  SATFPRDIQML  401
            SAT PR+++ L
Sbjct  155  SATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 142 bits (360),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 53/112 (47%), Positives = 69/112 (62%), Gaps = 4/112 (4%)

Query  435  DKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQR-FPATAIHGDRTQRERERAL  493
            +K   LL++L      G  LIF +TK+  +A  + LL +       +HGD +Q ERE  L
Sbjct  1    EKLEALLELLKKE-RGGKVLIFSQTKKTLEA--ELLLEKEGIKVARLHGDLSQEEREEIL  57

Query  494  EMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAG  545
            E FR G+  +LVAT VA RGLD+P+V  VINYDLP +   Y+ RIGR GRAG
Sbjct  58   EDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 856852990


Query= TCONS_00030305

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  187     8e-57
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  141     1e-40


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 187 bits (478),  Expect = 8e-57, Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 27/191 (14%)

Query  189  TPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQASGQFGYGRQ  248
            TP+Q  +IP ++ GRD++  A TGSGKT  FL P L                       +
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL-------------------DK  41

Query  249  RKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVA  308
                P +L+LAPTREL  QI++E +K      ++   + GG     QL ++ +G D+LV 
Sbjct  42   LDNGPQALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVG  100

Query  309  TPGRLVDLI-ERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMF  367
            TPGRL+DL+ ER  +   N+K LVLDEA R+LDMGF P +  I+    +P   +RQ L+ 
Sbjct  101  TPGRLLDLLQERKLLK--NLKLLVLDEAHRLLDMGFGPDLEEIL--RRLP--KKRQILLL  154

Query  368  SATFPRDIQML  378
            SAT PR+++ L
Sbjct  155  SATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 141 bits (358),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 53/112 (47%), Positives = 69/112 (62%), Gaps = 4/112 (4%)

Query  412  DKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQR-FPATAIHGDRTQRERERAL  470
            +K   LL++L      G  LIF +TK+  +A  + LL +       +HGD +Q ERE  L
Sbjct  1    EKLEALLELLKKE-RGGKVLIFSQTKKTLEA--ELLLEKEGIKVARLHGDLSQEEREEIL  57

Query  471  EMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAG  522
            E FR G+  +LVAT VA RGLD+P+V  VINYDLP +   Y+ RIGR GRAG
Sbjct  58   EDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 822932820


Query= TCONS_00030306

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  187     8e-57
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  141     1e-40


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 187 bits (478),  Expect = 8e-57, Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 27/191 (14%)

Query  189  TPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQASGQFGYGRQ  248
            TP+Q  +IP ++ GRD++  A TGSGKT  FL P L                       +
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL-------------------DK  41

Query  249  RKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVA  308
                P +L+LAPTREL  QI++E +K      ++   + GG     QL ++ +G D+LV 
Sbjct  42   LDNGPQALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVG  100

Query  309  TPGRLVDLI-ERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMF  367
            TPGRL+DL+ ER  +   N+K LVLDEA R+LDMGF P +  I+    +P   +RQ L+ 
Sbjct  101  TPGRLLDLLQERKLLK--NLKLLVLDEAHRLLDMGFGPDLEEIL--RRLP--KKRQILLL  154

Query  368  SATFPRDIQML  378
            SAT PR+++ L
Sbjct  155  SATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 141 bits (358),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 53/112 (47%), Positives = 69/112 (62%), Gaps = 4/112 (4%)

Query  412  DKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQR-FPATAIHGDRTQRERERAL  470
            +K   LL++L      G  LIF +TK+  +A  + LL +       +HGD +Q ERE  L
Sbjct  1    EKLEALLELLKKE-RGGKVLIFSQTKKTLEA--ELLLEKEGIKVARLHGDLSQEEREEIL  57

Query  471  EMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAG  522
            E FR G+  +LVAT VA RGLD+P+V  VINYDLP +   Y+ RIGR GRAG
Sbjct  58   EDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.317    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 822932820


Query= TCONS_00030307

Length=822


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1043618678


Query= TCONS_00030308

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  169     2e-51
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  136     8e-40


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 169 bits (431),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 70/180 (39%), Positives = 99/180 (55%), Gaps = 27/180 (15%)

Query  1    MNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQASGQFGYGRQRKAYPTSLILA  60
            + GRD++  A TGSGKT  FL P L                       +    P +L+LA
Sbjct  12   LEGRDVLVQAPTGSGKTLAFLLPALEAL-------------------DKLDNGPQALVLA  52

Query  61   PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLI-E  119
            PTREL  QI++E +K      ++   + GG     QL ++ +G D+LV TPGRL+DL+ E
Sbjct  53   PTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKL-KGPDILVGTPGRLLDLLQE  111

Query  120  RGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMFSATFPRDIQML  179
            R  +   N+K LVLDEA R+LDMGF P +  I+    +P   +RQ L+ SAT PR+++ L
Sbjct  112  RKLLK--NLKLLVLDEAHRLLDMGFGPDLEEIL--RRLP--KKRQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 136 bits (346),  Expect = 8e-40, Method: Composition-based stats.
 Identities = 53/112 (47%), Positives = 69/112 (62%), Gaps = 4/112 (4%)

Query  213  DKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQR-FPATAIHGDRTQRERERAL  271
            +K   LL++L      G  LIF +TK+  +A  + LL +       +HGD +Q ERE  L
Sbjct  1    EKLEALLELLKKE-RGGKVLIFSQTKKTLEA--ELLLEKEGIKVARLHGDLSQEEREEIL  57

Query  272  EMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAG  323
            E FR G+  +LVAT VA RGLD+P+V  VINYDLP +   Y+ RIGR GRAG
Sbjct  58   EDFRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.319    0.140    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00034900

Length=801


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1028792464


Query= TCONS_00034901

Length=276


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00034902

Length=390


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00030310

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460341 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme....  372     1e-126
CDD:460462 pfam02142, MGS, MGS-like domain. This domain composes ...  96.4    1e-24 


>CDD:460341 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme.  This 
is a family of bifunctional enzymes catalyzing the last two 
steps in de novo purine biosynthesis. The bifunctional enzyme 
is found in both prokaryotes and eukaryotes. The second last 
step is catalyzed by 5-aminoimidazole-4-carboxamide ribonucleotide 
formyltransferase EC:2.1.2.3 (AICARFT), this enzyme 
catalyzes the formylation of AICAR with 10-formyl-tetrahydrofolate 
to yield FAICAR and tetrahydrofolate. This is catalyzed 
by a pair of C-terminal deaminase fold domains in the protein, 
where the active site is formed by the dimeric interface 
of two monomeric units. The last step is catalyzed by the 
N-terminal IMP (Inosine monophosphate) cyclohydrolase domain 
EC:3.5.4.10 (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide 
ribonucleotide) to IMP.
Length=308

 Score = 372 bits (959),  Expect = 1e-126, Method: Composition-based stats.
 Identities = 133/340 (39%), Positives = 182/340 (54%), Gaps = 43/340 (13%)

Query  135  AAKNHARVTILSDPQDYPEFLKELEA-GEISETSRKQYALKAFEHTADYDTAISGFFRKQ  193
            AAKNH  VT++ DP DY E L+EL+A G  S  +R++ A KAF HTA YD AI+ +   +
Sbjct  1    AAKNHKDVTVVVDPADYAEVLEELKANGGTSLETRRRLAAKAFAHTAAYDAAIANYLAGK  60

Query  194  -----YAGNGEQYLPLRYGANPHQKPA---SAYMLHGKLPFKALNG-SPGYINLLDALNA  244
                    + E+   LRYG NPHQK A         G    + L G    Y N+LDA  A
Sbjct  61   EFPETLTLSFEKVQDLRYGENPHQKAAFYRDPGPAGGLATAEQLQGKELSYNNILDADAA  120

Query  245  WALVKELKQALGYPAAASFKHVSPAGAAVGVPLSEKERKVYMVDDIAGIETSGLAQAYAR  304
              LVKE  +    PAA   KH +P G AVG                       LA+AY R
Sbjct  121  LELVKEFDE----PAAVIVKHANPCGVAVG---------------------DTLAEAYRR  155

Query  305  ARGADRMSSFGDLLALSDVCDVPTAKIISREVSDGVIAAGYTPEALEILSKKKGGKYLVL  364
            A  AD +S+FG ++AL+   D  TA+ IS+   + +IA G+TPEALEIL KKK     +L
Sbjct  156  ALAADPVSAFGGIIALNRPVDAATAEEISKIFLEVIIAPGFTPEALEILKKKK--NLRLL  213

Query  365  QMDENYVPASE-ETRTIYGVQLSQQRNDVVISPQKTFNTIITPKDLKALPDSALRDLTVA  423
            ++D  Y P    E R++ G  L Q R+D +I P      ++T    +A  +  LRDL  A
Sbjct  214  EIDPLYPPPPGLEFRSVSGGLLVQDRDDALIDPDDL--KVVTK---RAPTEEELRDLLFA  268

Query  424  TIALKYTQSNSVCYALNGQVIGLGAGQQSRIHCTRLAGDK  463
               +K+ +SN++ YA +GQ +G+GAGQ SR+   R+A +K
Sbjct  269  WKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAIEK  308


>CDD:460462 pfam02142, MGS, MGS-like domain.  This domain composes the whole 
protein of methylglyoxal synthetase and the domain is also 
found in Carbamoyl phosphate synthetase (CPS) where it forms 
a regulatory domain that binds to the allosteric effector 
ornithine. This family also includes inosicase. The known 
structures in this family show a common phosphate binding site.
Length=93

 Score = 96.4 bits (241),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 55/115 (48%), Gaps = 22/115 (19%)

Query  16   GLLDLAKGLVKHNVRLLASGGTARMIREAGFPVEDVSAITHAPEMLGGRVKTLHPAVHGG  75
            GL++LAK LV+    LLA+GGTA+ +REAG PV +V   T      GGRV          
Sbjct  1    GLVELAKALVELGFELLATGGTAKFLREAGIPVTEVVEKTGEG-RPGGRV----------  49

Query  76   ILARDIESDEKDLADQNISKVDFVVCNLYPFKETVNKVNVTIAEAVEEIDIGGVT  130
                        + +  I   D V+  LYPFK TV+     I  A E IDI G T
Sbjct  50   -------QIGDLIKNGEI---DLVINTLYPFKATVHDG-YAIRRAAENIDIPGPT  93



Lambda      K        H        a         alpha
   0.316    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 751697284


Query= TCONS_00030311

Length=862


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0757    0.140     1.90     42.6     43.6 

Effective search space used: 1101039238


Query= TCONS_00034904

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460341 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme....  372     1e-126
CDD:460462 pfam02142, MGS, MGS-like domain. This domain composes ...  96.4    1e-24 


>CDD:460341 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme.  This 
is a family of bifunctional enzymes catalyzing the last two 
steps in de novo purine biosynthesis. The bifunctional enzyme 
is found in both prokaryotes and eukaryotes. The second last 
step is catalyzed by 5-aminoimidazole-4-carboxamide ribonucleotide 
formyltransferase EC:2.1.2.3 (AICARFT), this enzyme 
catalyzes the formylation of AICAR with 10-formyl-tetrahydrofolate 
to yield FAICAR and tetrahydrofolate. This is catalyzed 
by a pair of C-terminal deaminase fold domains in the protein, 
where the active site is formed by the dimeric interface 
of two monomeric units. The last step is catalyzed by the 
N-terminal IMP (Inosine monophosphate) cyclohydrolase domain 
EC:3.5.4.10 (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide 
ribonucleotide) to IMP.
Length=308

 Score = 372 bits (959),  Expect = 1e-126, Method: Composition-based stats.
 Identities = 133/340 (39%), Positives = 182/340 (54%), Gaps = 43/340 (13%)

Query  135  AAKNHARVTILSDPQDYPEFLKELEA-GEISETSRKQYALKAFEHTADYDTAISGFFRKQ  193
            AAKNH  VT++ DP DY E L+EL+A G  S  +R++ A KAF HTA YD AI+ +   +
Sbjct  1    AAKNHKDVTVVVDPADYAEVLEELKANGGTSLETRRRLAAKAFAHTAAYDAAIANYLAGK  60

Query  194  -----YAGNGEQYLPLRYGANPHQKPA---SAYMLHGKLPFKALNG-SPGYINLLDALNA  244
                    + E+   LRYG NPHQK A         G    + L G    Y N+LDA  A
Sbjct  61   EFPETLTLSFEKVQDLRYGENPHQKAAFYRDPGPAGGLATAEQLQGKELSYNNILDADAA  120

Query  245  WALVKELKQALGYPAAASFKHVSPAGAAVGVPLSEKERKVYMVDDIAGIETSGLAQAYAR  304
              LVKE  +    PAA   KH +P G AVG                       LA+AY R
Sbjct  121  LELVKEFDE----PAAVIVKHANPCGVAVG---------------------DTLAEAYRR  155

Query  305  ARGADRMSSFGDLLALSDVCDVPTAKIISREVSDGVIAAGYTPEALEILSKKKGGKYLVL  364
            A  AD +S+FG ++AL+   D  TA+ IS+   + +IA G+TPEALEIL KKK     +L
Sbjct  156  ALAADPVSAFGGIIALNRPVDAATAEEISKIFLEVIIAPGFTPEALEILKKKK--NLRLL  213

Query  365  QMDENYVPASE-ETRTIYGVQLSQQRNDVVISPQKTFNTIITPKDLKALPDSALRDLTVA  423
            ++D  Y P    E R++ G  L Q R+D +I P      ++T    +A  +  LRDL  A
Sbjct  214  EIDPLYPPPPGLEFRSVSGGLLVQDRDDALIDPDDL--KVVTK---RAPTEEELRDLLFA  268

Query  424  TIALKYTQSNSVCYALNGQVIGLGAGQQSRIHCTRLAGDK  463
               +K+ +SN++ YA +GQ +G+GAGQ SR+   R+A +K
Sbjct  269  WKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAIEK  308


>CDD:460462 pfam02142, MGS, MGS-like domain.  This domain composes the whole 
protein of methylglyoxal synthetase and the domain is also 
found in Carbamoyl phosphate synthetase (CPS) where it forms 
a regulatory domain that binds to the allosteric effector 
ornithine. This family also includes inosicase. The known 
structures in this family show a common phosphate binding site.
Length=93

 Score = 96.4 bits (241),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 55/115 (48%), Gaps = 22/115 (19%)

Query  16   GLLDLAKGLVKHNVRLLASGGTARMIREAGFPVEDVSAITHAPEMLGGRVKTLHPAVHGG  75
            GL++LAK LV+    LLA+GGTA+ +REAG PV +V   T      GGRV          
Sbjct  1    GLVELAKALVELGFELLATGGTAKFLREAGIPVTEVVEKTGEG-RPGGRV----------  49

Query  76   ILARDIESDEKDLADQNISKVDFVVCNLYPFKETVNKVNVTIAEAVEEIDIGGVT  130
                        + +  I   D V+  LYPFK TV+     I  A E IDI G T
Sbjct  50   -------QIGDLIKNGEI---DLVINTLYPFKATVHDG-YAIRRAAENIDIPGPT  93



Lambda      K        H        a         alpha
   0.316    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 751697284


Query= TCONS_00030313

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460341 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme....  372     2e-127


>CDD:460341 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme.  This 
is a family of bifunctional enzymes catalyzing the last two 
steps in de novo purine biosynthesis. The bifunctional enzyme 
is found in both prokaryotes and eukaryotes. The second last 
step is catalyzed by 5-aminoimidazole-4-carboxamide ribonucleotide 
formyltransferase EC:2.1.2.3 (AICARFT), this enzyme 
catalyzes the formylation of AICAR with 10-formyl-tetrahydrofolate 
to yield FAICAR and tetrahydrofolate. This is catalyzed 
by a pair of C-terminal deaminase fold domains in the protein, 
where the active site is formed by the dimeric interface 
of two monomeric units. The last step is catalyzed by the 
N-terminal IMP (Inosine monophosphate) cyclohydrolase domain 
EC:3.5.4.10 (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide 
ribonucleotide) to IMP.
Length=308

 Score = 372 bits (959),  Expect = 2e-127, Method: Composition-based stats.
 Identities = 133/340 (39%), Positives = 182/340 (54%), Gaps = 43/340 (13%)

Query  76   AAKNHARVTILSDPQDYPEFLKELEA-GEISETSRKQYALKAFEHTADYDTAISGFFRKQ  134
            AAKNH  VT++ DP DY E L+EL+A G  S  +R++ A KAF HTA YD AI+ +   +
Sbjct  1    AAKNHKDVTVVVDPADYAEVLEELKANGGTSLETRRRLAAKAFAHTAAYDAAIANYLAGK  60

Query  135  -----YAGNGEQYLPLRYGANPHQKPA---SAYMLHGKLPFKALNG-SPGYINLLDALNA  185
                    + E+   LRYG NPHQK A         G    + L G    Y N+LDA  A
Sbjct  61   EFPETLTLSFEKVQDLRYGENPHQKAAFYRDPGPAGGLATAEQLQGKELSYNNILDADAA  120

Query  186  WALVKELKQALGYPAAASFKHVSPAGAAVGVPLSEKERKVYMVDDIAGIETSGLAQAYAR  245
              LVKE  +    PAA   KH +P G AVG                       LA+AY R
Sbjct  121  LELVKEFDE----PAAVIVKHANPCGVAVG---------------------DTLAEAYRR  155

Query  246  ARGADRMSSFGDLLALSDVCDVPTAKIISREVSDGVIAAGYTPEALEILSKKKGGKYLVL  305
            A  AD +S+FG ++AL+   D  TA+ IS+   + +IA G+TPEALEIL KKK     +L
Sbjct  156  ALAADPVSAFGGIIALNRPVDAATAEEISKIFLEVIIAPGFTPEALEILKKKK--NLRLL  213

Query  306  QMDENYVPASE-ETRTIYGVQLSQQRNDVVISPQKTFNTIITPKDLKALPDSALRDLTVA  364
            ++D  Y P    E R++ G  L Q R+D +I P      ++T    +A  +  LRDL  A
Sbjct  214  EIDPLYPPPPGLEFRSVSGGLLVQDRDDALIDPDDL--KVVTK---RAPTEEELRDLLFA  268

Query  365  TIALKYTQSNSVCYALNGQVIGLGAGQQSRIHCTRLAGDK  404
               +K+ +SN++ YA +GQ +G+GAGQ SR+   R+A +K
Sbjct  269  WKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAIEK  308



Lambda      K        H        a         alpha
   0.316    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00034905

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460341 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme....  372     2e-127


>CDD:460341 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme.  This 
is a family of bifunctional enzymes catalyzing the last two 
steps in de novo purine biosynthesis. The bifunctional enzyme 
is found in both prokaryotes and eukaryotes. The second last 
step is catalyzed by 5-aminoimidazole-4-carboxamide ribonucleotide 
formyltransferase EC:2.1.2.3 (AICARFT), this enzyme 
catalyzes the formylation of AICAR with 10-formyl-tetrahydrofolate 
to yield FAICAR and tetrahydrofolate. This is catalyzed 
by a pair of C-terminal deaminase fold domains in the protein, 
where the active site is formed by the dimeric interface 
of two monomeric units. The last step is catalyzed by the 
N-terminal IMP (Inosine monophosphate) cyclohydrolase domain 
EC:3.5.4.10 (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide 
ribonucleotide) to IMP.
Length=308

 Score = 372 bits (959),  Expect = 2e-127, Method: Composition-based stats.
 Identities = 133/340 (39%), Positives = 182/340 (54%), Gaps = 43/340 (13%)

Query  76   AAKNHARVTILSDPQDYPEFLKELEA-GEISETSRKQYALKAFEHTADYDTAISGFFRKQ  134
            AAKNH  VT++ DP DY E L+EL+A G  S  +R++ A KAF HTA YD AI+ +   +
Sbjct  1    AAKNHKDVTVVVDPADYAEVLEELKANGGTSLETRRRLAAKAFAHTAAYDAAIANYLAGK  60

Query  135  -----YAGNGEQYLPLRYGANPHQKPA---SAYMLHGKLPFKALNG-SPGYINLLDALNA  185
                    + E+   LRYG NPHQK A         G    + L G    Y N+LDA  A
Sbjct  61   EFPETLTLSFEKVQDLRYGENPHQKAAFYRDPGPAGGLATAEQLQGKELSYNNILDADAA  120

Query  186  WALVKELKQALGYPAAASFKHVSPAGAAVGVPLSEKERKVYMVDDIAGIETSGLAQAYAR  245
              LVKE  +    PAA   KH +P G AVG                       LA+AY R
Sbjct  121  LELVKEFDE----PAAVIVKHANPCGVAVG---------------------DTLAEAYRR  155

Query  246  ARGADRMSSFGDLLALSDVCDVPTAKIISREVSDGVIAAGYTPEALEILSKKKGGKYLVL  305
            A  AD +S+FG ++AL+   D  TA+ IS+   + +IA G+TPEALEIL KKK     +L
Sbjct  156  ALAADPVSAFGGIIALNRPVDAATAEEISKIFLEVIIAPGFTPEALEILKKKK--NLRLL  213

Query  306  QMDENYVPASE-ETRTIYGVQLSQQRNDVVISPQKTFNTIITPKDLKALPDSALRDLTVA  364
            ++D  Y P    E R++ G  L Q R+D +I P      ++T    +A  +  LRDL  A
Sbjct  214  EIDPLYPPPPGLEFRSVSGGLLVQDRDDALIDPDDL--KVVTK---RAPTEEELRDLLFA  268

Query  365  TIALKYTQSNSVCYALNGQVIGLGAGQQSRIHCTRLAGDK  404
               +K+ +SN++ YA +GQ +G+GAGQ SR+   R+A +K
Sbjct  269  WKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAIEK  308



Lambda      K        H        a         alpha
   0.316    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00030314

Length=581
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460341 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme....  374     2e-127
CDD:460462 pfam02142, MGS, MGS-like domain. This domain composes ...  97.2    5e-25 


>CDD:460341 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme.  This 
is a family of bifunctional enzymes catalyzing the last two 
steps in de novo purine biosynthesis. The bifunctional enzyme 
is found in both prokaryotes and eukaryotes. The second last 
step is catalyzed by 5-aminoimidazole-4-carboxamide ribonucleotide 
formyltransferase EC:2.1.2.3 (AICARFT), this enzyme 
catalyzes the formylation of AICAR with 10-formyl-tetrahydrofolate 
to yield FAICAR and tetrahydrofolate. This is catalyzed 
by a pair of C-terminal deaminase fold domains in the protein, 
where the active site is formed by the dimeric interface 
of two monomeric units. The last step is catalyzed by the 
N-terminal IMP (Inosine monophosphate) cyclohydrolase domain 
EC:3.5.4.10 (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide 
ribonucleotide) to IMP.
Length=308

 Score = 374 bits (963),  Expect = 2e-127, Method: Composition-based stats.
 Identities = 133/340 (39%), Positives = 182/340 (54%), Gaps = 43/340 (13%)

Query  135  AAKNHARVTILSDPQDYPEFLKELEA-GEISETSRKQYALKAFEHTADYDTAISGFFRKQ  193
            AAKNH  VT++ DP DY E L+EL+A G  S  +R++ A KAF HTA YD AI+ +   +
Sbjct  1    AAKNHKDVTVVVDPADYAEVLEELKANGGTSLETRRRLAAKAFAHTAAYDAAIANYLAGK  60

Query  194  -----YAGNGEQYLPLRYGANPHQKPA---SAYMLHGKLPFKALNG-SPGYINLLDALNA  244
                    + E+   LRYG NPHQK A         G    + L G    Y N+LDA  A
Sbjct  61   EFPETLTLSFEKVQDLRYGENPHQKAAFYRDPGPAGGLATAEQLQGKELSYNNILDADAA  120

Query  245  WALVKELKQALGYPAAASFKHVSPAGAAVGVPLSEKERKVYMVDDIAGIETSGLAQAYAR  304
              LVKE  +    PAA   KH +P G AVG                       LA+AY R
Sbjct  121  LELVKEFDE----PAAVIVKHANPCGVAVG---------------------DTLAEAYRR  155

Query  305  ARGADRMSSFGDLLALSDVCDVPTAKIISREVSDGVIAAGYTPEALEILSKKKGGKYLVL  364
            A  AD +S+FG ++AL+   D  TA+ IS+   + +IA G+TPEALEIL KKK     +L
Sbjct  156  ALAADPVSAFGGIIALNRPVDAATAEEISKIFLEVIIAPGFTPEALEILKKKK--NLRLL  213

Query  365  QMDENYVPASE-ETRTIYGVQLSQQRNDVVISPQKTFNTIITPKDLKALPDSALRDLTVA  423
            ++D  Y P    E R++ G  L Q R+D +I P      ++T    +A  +  LRDL  A
Sbjct  214  EIDPLYPPPPGLEFRSVSGGLLVQDRDDALIDPDDL--KVVTK---RAPTEEELRDLLFA  268

Query  424  TIALKYTQSNSVCYALNGQVIGLGAGQQSRIHCTRLAGDK  463
               +K+ +SN++ YA +GQ +G+GAGQ SR+   R+A +K
Sbjct  269  WKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAIEK  308


>CDD:460462 pfam02142, MGS, MGS-like domain.  This domain composes the whole 
protein of methylglyoxal synthetase and the domain is also 
found in Carbamoyl phosphate synthetase (CPS) where it forms 
a regulatory domain that binds to the allosteric effector 
ornithine. This family also includes inosicase. The known 
structures in this family show a common phosphate binding site.
Length=93

 Score = 97.2 bits (243),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 55/115 (48%), Gaps = 22/115 (19%)

Query  16   GLLDLAKGLVKHNVRLLASGGTARMIREAGFPVEDVSAITHAPEMLGGRVKTLHPAVHGG  75
            GL++LAK LV+    LLA+GGTA+ +REAG PV +V   T      GGRV          
Sbjct  1    GLVELAKALVELGFELLATGGTAKFLREAGIPVTEVVEKTGEG-RPGGRV----------  49

Query  76   ILARDIESDEKDLADQNISKVDFVVCNLYPFKETVNKVNVTIAEAVEEIDIGGVT  130
                        + +  I   D V+  LYPFK TV+     I  A E IDI G T
Sbjct  50   -------QIGDLIKNGEI---DLVINTLYPFKATVHDG-YAIRRAAENIDIPGPT  93



Lambda      K        H        a         alpha
   0.316    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00030315

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460341 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme....  372     1e-126
CDD:460462 pfam02142, MGS, MGS-like domain. This domain composes ...  96.4    1e-24 


>CDD:460341 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme.  This 
is a family of bifunctional enzymes catalyzing the last two 
steps in de novo purine biosynthesis. The bifunctional enzyme 
is found in both prokaryotes and eukaryotes. The second last 
step is catalyzed by 5-aminoimidazole-4-carboxamide ribonucleotide 
formyltransferase EC:2.1.2.3 (AICARFT), this enzyme 
catalyzes the formylation of AICAR with 10-formyl-tetrahydrofolate 
to yield FAICAR and tetrahydrofolate. This is catalyzed 
by a pair of C-terminal deaminase fold domains in the protein, 
where the active site is formed by the dimeric interface 
of two monomeric units. The last step is catalyzed by the 
N-terminal IMP (Inosine monophosphate) cyclohydrolase domain 
EC:3.5.4.10 (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide 
ribonucleotide) to IMP.
Length=308

 Score = 372 bits (959),  Expect = 1e-126, Method: Composition-based stats.
 Identities = 133/340 (39%), Positives = 182/340 (54%), Gaps = 43/340 (13%)

Query  135  AAKNHARVTILSDPQDYPEFLKELEA-GEISETSRKQYALKAFEHTADYDTAISGFFRKQ  193
            AAKNH  VT++ DP DY E L+EL+A G  S  +R++ A KAF HTA YD AI+ +   +
Sbjct  1    AAKNHKDVTVVVDPADYAEVLEELKANGGTSLETRRRLAAKAFAHTAAYDAAIANYLAGK  60

Query  194  -----YAGNGEQYLPLRYGANPHQKPA---SAYMLHGKLPFKALNG-SPGYINLLDALNA  244
                    + E+   LRYG NPHQK A         G    + L G    Y N+LDA  A
Sbjct  61   EFPETLTLSFEKVQDLRYGENPHQKAAFYRDPGPAGGLATAEQLQGKELSYNNILDADAA  120

Query  245  WALVKELKQALGYPAAASFKHVSPAGAAVGVPLSEKERKVYMVDDIAGIETSGLAQAYAR  304
              LVKE  +    PAA   KH +P G AVG                       LA+AY R
Sbjct  121  LELVKEFDE----PAAVIVKHANPCGVAVG---------------------DTLAEAYRR  155

Query  305  ARGADRMSSFGDLLALSDVCDVPTAKIISREVSDGVIAAGYTPEALEILSKKKGGKYLVL  364
            A  AD +S+FG ++AL+   D  TA+ IS+   + +IA G+TPEALEIL KKK     +L
Sbjct  156  ALAADPVSAFGGIIALNRPVDAATAEEISKIFLEVIIAPGFTPEALEILKKKK--NLRLL  213

Query  365  QMDENYVPASE-ETRTIYGVQLSQQRNDVVISPQKTFNTIITPKDLKALPDSALRDLTVA  423
            ++D  Y P    E R++ G  L Q R+D +I P      ++T    +A  +  LRDL  A
Sbjct  214  EIDPLYPPPPGLEFRSVSGGLLVQDRDDALIDPDDL--KVVTK---RAPTEEELRDLLFA  268

Query  424  TIALKYTQSNSVCYALNGQVIGLGAGQQSRIHCTRLAGDK  463
               +K+ +SN++ YA +GQ +G+GAGQ SR+   R+A +K
Sbjct  269  WKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAIEK  308


>CDD:460462 pfam02142, MGS, MGS-like domain.  This domain composes the whole 
protein of methylglyoxal synthetase and the domain is also 
found in Carbamoyl phosphate synthetase (CPS) where it forms 
a regulatory domain that binds to the allosteric effector 
ornithine. This family also includes inosicase. The known 
structures in this family show a common phosphate binding site.
Length=93

 Score = 96.4 bits (241),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 55/115 (48%), Gaps = 22/115 (19%)

Query  16   GLLDLAKGLVKHNVRLLASGGTARMIREAGFPVEDVSAITHAPEMLGGRVKTLHPAVHGG  75
            GL++LAK LV+    LLA+GGTA+ +REAG PV +V   T      GGRV          
Sbjct  1    GLVELAKALVELGFELLATGGTAKFLREAGIPVTEVVEKTGEG-RPGGRV----------  49

Query  76   ILARDIESDEKDLADQNISKVDFVVCNLYPFKETVNKVNVTIAEAVEEIDIGGVT  130
                        + +  I   D V+  LYPFK TV+     I  A E IDI G T
Sbjct  50   -------QIGDLIKNGEI---DLVINTLYPFKATVHDG-YAIRRAAENIDIPGPT  93



Lambda      K        H        a         alpha
   0.316    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 751697284


Query= TCONS_00034906

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460341 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme....  372     2e-127


>CDD:460341 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme.  This 
is a family of bifunctional enzymes catalyzing the last two 
steps in de novo purine biosynthesis. The bifunctional enzyme 
is found in both prokaryotes and eukaryotes. The second last 
step is catalyzed by 5-aminoimidazole-4-carboxamide ribonucleotide 
formyltransferase EC:2.1.2.3 (AICARFT), this enzyme 
catalyzes the formylation of AICAR with 10-formyl-tetrahydrofolate 
to yield FAICAR and tetrahydrofolate. This is catalyzed 
by a pair of C-terminal deaminase fold domains in the protein, 
where the active site is formed by the dimeric interface 
of two monomeric units. The last step is catalyzed by the 
N-terminal IMP (Inosine monophosphate) cyclohydrolase domain 
EC:3.5.4.10 (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide 
ribonucleotide) to IMP.
Length=308

 Score = 372 bits (959),  Expect = 2e-127, Method: Composition-based stats.
 Identities = 133/340 (39%), Positives = 182/340 (54%), Gaps = 43/340 (13%)

Query  76   AAKNHARVTILSDPQDYPEFLKELEA-GEISETSRKQYALKAFEHTADYDTAISGFFRKQ  134
            AAKNH  VT++ DP DY E L+EL+A G  S  +R++ A KAF HTA YD AI+ +   +
Sbjct  1    AAKNHKDVTVVVDPADYAEVLEELKANGGTSLETRRRLAAKAFAHTAAYDAAIANYLAGK  60

Query  135  -----YAGNGEQYLPLRYGANPHQKPA---SAYMLHGKLPFKALNG-SPGYINLLDALNA  185
                    + E+   LRYG NPHQK A         G    + L G    Y N+LDA  A
Sbjct  61   EFPETLTLSFEKVQDLRYGENPHQKAAFYRDPGPAGGLATAEQLQGKELSYNNILDADAA  120

Query  186  WALVKELKQALGYPAAASFKHVSPAGAAVGVPLSEKERKVYMVDDIAGIETSGLAQAYAR  245
              LVKE  +    PAA   KH +P G AVG                       LA+AY R
Sbjct  121  LELVKEFDE----PAAVIVKHANPCGVAVG---------------------DTLAEAYRR  155

Query  246  ARGADRMSSFGDLLALSDVCDVPTAKIISREVSDGVIAAGYTPEALEILSKKKGGKYLVL  305
            A  AD +S+FG ++AL+   D  TA+ IS+   + +IA G+TPEALEIL KKK     +L
Sbjct  156  ALAADPVSAFGGIIALNRPVDAATAEEISKIFLEVIIAPGFTPEALEILKKKK--NLRLL  213

Query  306  QMDENYVPASE-ETRTIYGVQLSQQRNDVVISPQKTFNTIITPKDLKALPDSALRDLTVA  364
            ++D  Y P    E R++ G  L Q R+D +I P      ++T    +A  +  LRDL  A
Sbjct  214  EIDPLYPPPPGLEFRSVSGGLLVQDRDDALIDPDDL--KVVTK---RAPTEEELRDLLFA  268

Query  365  TIALKYTQSNSVCYALNGQVIGLGAGQQSRIHCTRLAGDK  404
               +K+ +SN++ YA +GQ +G+GAGQ SR+   R+A +K
Sbjct  269  WKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAIEK  308



Lambda      K        H        a         alpha
   0.316    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00030316

Length=581
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460341 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme....  374     2e-127
CDD:460462 pfam02142, MGS, MGS-like domain. This domain composes ...  97.2    5e-25 


>CDD:460341 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme.  This 
is a family of bifunctional enzymes catalyzing the last two 
steps in de novo purine biosynthesis. The bifunctional enzyme 
is found in both prokaryotes and eukaryotes. The second last 
step is catalyzed by 5-aminoimidazole-4-carboxamide ribonucleotide 
formyltransferase EC:2.1.2.3 (AICARFT), this enzyme 
catalyzes the formylation of AICAR with 10-formyl-tetrahydrofolate 
to yield FAICAR and tetrahydrofolate. This is catalyzed 
by a pair of C-terminal deaminase fold domains in the protein, 
where the active site is formed by the dimeric interface 
of two monomeric units. The last step is catalyzed by the 
N-terminal IMP (Inosine monophosphate) cyclohydrolase domain 
EC:3.5.4.10 (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide 
ribonucleotide) to IMP.
Length=308

 Score = 374 bits (963),  Expect = 2e-127, Method: Composition-based stats.
 Identities = 133/340 (39%), Positives = 182/340 (54%), Gaps = 43/340 (13%)

Query  135  AAKNHARVTILSDPQDYPEFLKELEA-GEISETSRKQYALKAFEHTADYDTAISGFFRKQ  193
            AAKNH  VT++ DP DY E L+EL+A G  S  +R++ A KAF HTA YD AI+ +   +
Sbjct  1    AAKNHKDVTVVVDPADYAEVLEELKANGGTSLETRRRLAAKAFAHTAAYDAAIANYLAGK  60

Query  194  -----YAGNGEQYLPLRYGANPHQKPA---SAYMLHGKLPFKALNG-SPGYINLLDALNA  244
                    + E+   LRYG NPHQK A         G    + L G    Y N+LDA  A
Sbjct  61   EFPETLTLSFEKVQDLRYGENPHQKAAFYRDPGPAGGLATAEQLQGKELSYNNILDADAA  120

Query  245  WALVKELKQALGYPAAASFKHVSPAGAAVGVPLSEKERKVYMVDDIAGIETSGLAQAYAR  304
              LVKE  +    PAA   KH +P G AVG                       LA+AY R
Sbjct  121  LELVKEFDE----PAAVIVKHANPCGVAVG---------------------DTLAEAYRR  155

Query  305  ARGADRMSSFGDLLALSDVCDVPTAKIISREVSDGVIAAGYTPEALEILSKKKGGKYLVL  364
            A  AD +S+FG ++AL+   D  TA+ IS+   + +IA G+TPEALEIL KKK     +L
Sbjct  156  ALAADPVSAFGGIIALNRPVDAATAEEISKIFLEVIIAPGFTPEALEILKKKK--NLRLL  213

Query  365  QMDENYVPASE-ETRTIYGVQLSQQRNDVVISPQKTFNTIITPKDLKALPDSALRDLTVA  423
            ++D  Y P    E R++ G  L Q R+D +I P      ++T    +A  +  LRDL  A
Sbjct  214  EIDPLYPPPPGLEFRSVSGGLLVQDRDDALIDPDDL--KVVTK---RAPTEEELRDLLFA  268

Query  424  TIALKYTQSNSVCYALNGQVIGLGAGQQSRIHCTRLAGDK  463
               +K+ +SN++ YA +GQ +G+GAGQ SR+   R+A +K
Sbjct  269  WKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAIEK  308


>CDD:460462 pfam02142, MGS, MGS-like domain.  This domain composes the whole 
protein of methylglyoxal synthetase and the domain is also 
found in Carbamoyl phosphate synthetase (CPS) where it forms 
a regulatory domain that binds to the allosteric effector 
ornithine. This family also includes inosicase. The known 
structures in this family show a common phosphate binding site.
Length=93

 Score = 97.2 bits (243),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 55/115 (48%), Gaps = 22/115 (19%)

Query  16   GLLDLAKGLVKHNVRLLASGGTARMIREAGFPVEDVSAITHAPEMLGGRVKTLHPAVHGG  75
            GL++LAK LV+    LLA+GGTA+ +REAG PV +V   T      GGRV          
Sbjct  1    GLVELAKALVELGFELLATGGTAKFLREAGIPVTEVVEKTGEG-RPGGRV----------  49

Query  76   ILARDIESDEKDLADQNISKVDFVVCNLYPFKETVNKVNVTIAEAVEEIDIGGVT  130
                        + +  I   D V+  LYPFK TV+     I  A E IDI G T
Sbjct  50   -------QIGDLIKNGEI---DLVINTLYPFKATVHDG-YAIRRAAENIDIPGPT  93



Lambda      K        H        a         alpha
   0.316    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00030318

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00030319

Length=1679
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463995 pfam13838, Clathrin_H_link, Clathrin-H-link. This shor...  126     5e-35
CDD:459884 pfam00637, Clathrin, Region in Clathrin and VPS. Each ...  121     1e-32


>CDD:463995 pfam13838, Clathrin_H_link, Clathrin-H-link.  This short domain 
is found on clathrins, and often appears on proteins directly 
downstream from the Clathrin-link domain pfam09268.
Length=66

 Score = 126 bits (318),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 47/66 (71%), Positives = 52/66 (79%), Gaps = 0/66 (0%)

Query  359  GLPGADHLYQQQFDNLLAQGNYSEAAKIAANSPRGFLRTPETINRFKNAPQTGQQMSVIL  418
            GLPGAD LY QQF+ LL QG+Y+EAAK+AANSPRG LRTPETI RFK  P    Q+S IL
Sbjct  1    GLPGADDLYFQQFNQLLNQGDYAEAAKVAANSPRGALRTPETIQRFKQLPAQPGQLSPIL  60

Query  419  QYFGML  424
            QYFG L
Sbjct  61   QYFGTL  66


>CDD:459884 pfam00637, Clathrin, Region in Clathrin and VPS.  Each region 
is about 140 amino acids long. The regions are composed of 
multiple alpha helical repeats. They occur in the arm region 
of the Clathrin heavy chain.
Length=142

 Score = 121 bits (307),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 77/141 (55%), Gaps = 6/141 (4%)

Query  1432  TPRIDVNRVVRIFQSSDNIPLIKPFLLNVQSQNKR---AVNDAINDLLIEEEDYKTLRDS  1488
             T  IDV+RVV++F+ +  +  +  +L +   ++ R   A+  A+ +L  + +D + L + 
Sbjct  5     TDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELEEF  64

Query  1489  VDNYDNFDAVQLAQRLEKHDLIFFRQIAANIYRNNKRWEKSISLSKQDKLYKDAIETAAI  1548
             +   +N+D  ++A+  EK DL     I   +Y+    W+++ISL K+   YKDAIE A  
Sbjct  65    LKKNNNYDLEKVAKLCEKADLYEEAVI---LYKKIGNWKEAISLLKKLGDYKDAIEYAVK  121

Query  1549  SGKSDVVEELLRYFVDIGSRE  1569
             S   ++ EELL   +D G  E
Sbjct  122   SSNPELWEELLEALLDNGRFE  142


 Score = 121 bits (307),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 48/142 (34%), Positives = 75/142 (53%), Gaps = 2/142 (1%)

Query  1133  YIRANDPSNYLEVIEIATHAGKDEELVKYLKMARKTLRE--PAIDTALAFCYARLDQLPE  1190
              I + DP +   V+++   AG  EEL+ YL+ A K      PA+ TAL   YA+ D   E
Sbjct  1     LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  1191  LEDFLRTTNVADVETSGDKAYAEGYHQAAKIFYTSISNWAKLATTLVHLEDYQAAVECAR  1250
             LE+FL+  N  D+E           ++ A I Y  I NW +  + L  L DY+ A+E A 
Sbjct  61    LEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAV  120

Query  1251  KANSVKVWKEVNQACVDKKEFR  1272
             K+++ ++W+E+ +A +D   F 
Sbjct  121   KSSNPELWEELLEALLDNGRFE  142


 Score = 116 bits (292),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 40/135 (30%), Positives = 66/135 (49%), Gaps = 4/135 (3%)

Query  845  IPIDELVSEVETRNRLKLLLPFLEATLATGNQ-QQAVYNALAKIYIDSN--NNPEKFLKE  901
            I +  +V   E    L+ L+ +LE+ L   ++   A+  AL ++Y   +     E+FLK+
Sbjct  8    IDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELEEFLKK  67

Query  902  NDMYDTLTVGKYCEKRDP-NLAYIAYRKGQNDLELINITNENAMYRAQARYLVERADPEI  960
            N+ YD   V K CEK D    A I Y+K  N  E I++  +   Y+    Y V+ ++PE+
Sbjct  68   NNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPEL  127

Query  961  WSFVLSENNLHRRPL  975
            W  +L     + R  
Sbjct  128  WEELLEALLDNGRFE  142


 Score = 115 bits (290),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 78/142 (55%), Gaps = 4/142 (3%)

Query  985   PESTEPDKVSVAVKAFLDADLPGELIELLEKIILEPSPFSDNGSLQNLLMLTAAKADK-G  1043
              EST+P  VS  VK F  A L  ELI  LE  + E S   +N +LQ  L+   AK D   
Sbjct  2     IESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSR--ENPALQTALIELYAKYDDPE  59

Query  1044  RLMEYIHQLNEFSADEIAEMCISVGLYEEAFEIYKKVNNYIAAVNVLVENIVSIDRAQEF  1103
              L E++ + N +  +++A++C    LYEEA  +YKK+ N+  A+++L +       A E+
Sbjct  60    ELEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKL-GDYKDAIEY  118

Query  1104  AERVELPDVWSKVAKAQLDGLR  1125
             A +   P++W ++ +A LD  R
Sbjct  119   AVKSSNPELWEELLEALLDNGR  140


 Score = 107 bits (270),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 36/145 (25%), Positives = 65/145 (45%), Gaps = 7/145 (5%)

Query  1279  LNLIVHAEELQDLVRQYERNGYFDELISVLEAGLGL-ERAHMGMFTELGIALSKYHP-DR  1336
             L       ++  +V+ +E+ G  +ELIS LE+ L    R +  + T L    +KY   + 
Sbjct  1     LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  1337  VMEHLKLFWSRINIPKMIRACEEANLWPELVFLYCHYDEWDNAALAMMERAADAWEHHSF  1396
             + E LK   +  ++ K+ + CE+A+L+ E V LY     W  A    + +    ++    
Sbjct  61    LEEFLKKNNN-YDLEKVAKLCEKADLYEEAVILYKKIGNWKEA--ISLLKKLGDYKD--A  115

Query  1397  KDIIVKVANLEIYYRALNFYLQEQP  1421
              +  VK +N E++   L   L    
Sbjct  116   IEYAVKSSNPELWEELLEALLDNGR  140


 Score = 98.1 bits (245),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query  690  ATKFSDLLGPGQLISLFEKYRTAEGLYYYLGSIVNLS--EDPEVHFKYIEAATAMGQITE  747
              + +D +   +++ LFEK    E L  YL S +     E+P +    IE         E
Sbjct  1    LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  748  VERICRESNYYNPEKVKNFLKEAKLTEQLPLIIVCDRFNFIHDLVLYLYQNQQYK-SIEV  806
            +E   +++N Y+ EKV    ++A L E+  ++          + +  L +   YK +IE 
Sbjct  61   LEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKK--IGNWKEAISLLKKLGDYKDAIEY  118

Query  807  YVQRVNPSRTPAVVGGLLDVDCDE  830
             V+  NP     ++  LLD    E
Sbjct  119  AVKSSNPELWEELLEALLDNGRFE  142


 Score = 91.9 bits (229),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 34/143 (24%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query  543  ESGALIDLDRVVDVFLSQNMIQQATSFLLDALKDNRPEHGHLQTRLLEMNLVNAP-QVAD  601
            ES   ID+ RVV +F    ++++  S+L  ALK++  E+  LQT L+E+       +  +
Sbjct  3    ESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELE  62

Query  602  AILGNEIFTHYDRPRISQLCENAGLIQRALENTDDPAVIKR--NIVRTDKLNPEWLMNYF  659
              L      +YD  ++++LCE A L + A+         K   ++++      +  + Y 
Sbjct  63   EFLKK--NNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKD-AIEYA  119

Query  660  GRLSVEQTLDCMDTMLEVNIRQN  682
             + S  +  + +   L  N R  
Sbjct  120  VKSSNPELWEELLEALLDNGRFE  142



Lambda      K        H        a         alpha
   0.319    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2111634596


Query= TCONS_00030320

Length=1511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463995 pfam13838, Clathrin_H_link, Clathrin-H-link. This shor...  125     6e-35
CDD:459884 pfam00637, Clathrin, Region in Clathrin and VPS. Each ...  121     2e-32


>CDD:463995 pfam13838, Clathrin_H_link, Clathrin-H-link.  This short domain 
is found on clathrins, and often appears on proteins directly 
downstream from the Clathrin-link domain pfam09268.
Length=66

 Score = 125 bits (317),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 47/66 (71%), Positives = 52/66 (79%), Gaps = 0/66 (0%)

Query  191  GLPGADHLYQQQFDNLLAQGNYSEAAKIAANSPRGFLRTPETINRFKNAPQTGQQMSVIL  250
            GLPGAD LY QQF+ LL QG+Y+EAAK+AANSPRG LRTPETI RFK  P    Q+S IL
Sbjct  1    GLPGADDLYFQQFNQLLNQGDYAEAAKVAANSPRGALRTPETIQRFKQLPAQPGQLSPIL  60

Query  251  QYFGML  256
            QYFG L
Sbjct  61   QYFGTL  66


>CDD:459884 pfam00637, Clathrin, Region in Clathrin and VPS.  Each region 
is about 140 amino acids long. The regions are composed of 
multiple alpha helical repeats. They occur in the arm region 
of the Clathrin heavy chain.
Length=142

 Score = 121 bits (306),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 77/141 (55%), Gaps = 6/141 (4%)

Query  1264  TPRIDVNRVVRIFQSSDNIPLIKPFLLNVQSQNKR---AVNDAINDLLIEEEDYKTLRDS  1320
             T  IDV+RVV++F+ +  +  +  +L +   ++ R   A+  A+ +L  + +D + L + 
Sbjct  5     TDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELEEF  64

Query  1321  VDNYDNFDAVQLAQRLEKHDLIFFRQIAANIYRNNKRWEKSISLSKQDKLYKDAIETAAI  1380
             +   +N+D  ++A+  EK DL     I   +Y+    W+++ISL K+   YKDAIE A  
Sbjct  65    LKKNNNYDLEKVAKLCEKADLYEEAVI---LYKKIGNWKEAISLLKKLGDYKDAIEYAVK  121

Query  1381  SGKSDVVEELLRYFVDIGSRE  1401
             S   ++ EELL   +D G  E
Sbjct  122   SSNPELWEELLEALLDNGRFE  142


 Score = 121 bits (305),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 48/142 (34%), Positives = 75/142 (53%), Gaps = 2/142 (1%)

Query  965   YIRANDPSNYLEVIEIATHAGKDEELVKYLKMARKTLRE--PAIDTALAFCYARLDQLPE  1022
              I + DP +   V+++   AG  EEL+ YL+ A K      PA+ TAL   YA+ D   E
Sbjct  1     LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  1023  LEDFLRTTNVADVETSGDKAYAEGYHQAAKIFYTSISNWAKLATTLVHLEDYQAAVECAR  1082
             LE+FL+  N  D+E           ++ A I Y  I NW +  + L  L DY+ A+E A 
Sbjct  61    LEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAV  120

Query  1083  KANSVKVWKEVNQACVDKKEFR  1104
             K+++ ++W+E+ +A +D   F 
Sbjct  121   KSSNPELWEELLEALLDNGRFE  142


 Score = 115 bits (291),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 40/135 (30%), Positives = 66/135 (49%), Gaps = 4/135 (3%)

Query  677  IPIDELVSEVETRNRLKLLLPFLEATLATGNQ-QQAVYNALAKIYIDSN--NNPEKFLKE  733
            I +  +V   E    L+ L+ +LE+ L   ++   A+  AL ++Y   +     E+FLK+
Sbjct  8    IDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELEEFLKK  67

Query  734  NDMYDTLTVGKYCEKRDP-NLAYIAYRKGQNDLELINITNENAMYRAQARYLVERADPEI  792
            N+ YD   V K CEK D    A I Y+K  N  E I++  +   Y+    Y V+ ++PE+
Sbjct  68   NNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPEL  127

Query  793  WSFVLSENNLHRRPL  807
            W  +L     + R  
Sbjct  128  WEELLEALLDNGRFE  142


 Score = 114 bits (288),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 78/142 (55%), Gaps = 4/142 (3%)

Query  817  PESTEPDKVSVAVKAFLDADLPGELIELLEKIILEPSPFSDNGSLQNLLMLTAAKADK-G  875
             EST+P  VS  VK F  A L  ELI  LE  + E S   +N +LQ  L+   AK D   
Sbjct  2    IESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSR--ENPALQTALIELYAKYDDPE  59

Query  876  RLMEYIHQLNEFSADEIAEMCISVGLYEEAFEIYKKVNNYIAAVNVLVENIVSIDRAQEF  935
             L E++ + N +  +++A++C    LYEEA  +YKK+ N+  A+++L +       A E+
Sbjct  60   ELEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKL-GDYKDAIEY  118

Query  936  AERVELPDVWSKVAKAQLDGLR  957
            A +   P++W ++ +A LD  R
Sbjct  119  AVKSSNPELWEELLEALLDNGR  140


 Score = 107 bits (269),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 36/145 (25%), Positives = 65/145 (45%), Gaps = 7/145 (5%)

Query  1111  LNLIVHAEELQDLVRQYERNGYFDELISVLEAGLGL-ERAHMGMFTELGIALSKYHP-DR  1168
             L       ++  +V+ +E+ G  +ELIS LE+ L    R +  + T L    +KY   + 
Sbjct  1     LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  1169  VMEHLKLFWSRINIPKMIRACEEANLWPELVFLYCHYDEWDNAALAMMERAADAWEHHSF  1228
             + E LK   +  ++ K+ + CE+A+L+ E V LY     W  A    + +    ++    
Sbjct  61    LEEFLKKNNN-YDLEKVAKLCEKADLYEEAVILYKKIGNWKEA--ISLLKKLGDYKD--A  115

Query  1229  KDIIVKVANLEIYYRALNFYLQEQP  1253
              +  VK +N E++   L   L    
Sbjct  116   IEYAVKSSNPELWEELLEALLDNGR  140


 Score = 97.7 bits (244),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query  522  ATKFSDLLGPGQLISLFEKYRTAEGLYYYLGSIVNLS--EDPEVHFKYIEAATAMGQITE  579
              + +D +   +++ LFEK    E L  YL S +     E+P +    IE         E
Sbjct  1    LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  580  VERICRESNYYNPEKVKNFLKEAKLTEQLPLIIVCDRFNFIHDLVLYLYQNQQYK-SIEV  638
            +E   +++N Y+ EKV    ++A L E+  ++          + +  L +   YK +IE 
Sbjct  61   LEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKK--IGNWKEAISLLKKLGDYKDAIEY  118

Query  639  YVQRVNPSRTPAVVGGLLDVDCDE  662
             V+  NP     ++  LLD    E
Sbjct  119  AVKSSNPELWEELLEALLDNGRFE  142


 Score = 91.2 bits (227),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 34/143 (24%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query  375  ESGALIDLDRVVDVFLSQNMIQQATSFLLDALKDNRPEHGHLQTRLLEMNLVNAP-QVAD  433
            ES   ID+ RVV +F    ++++  S+L  ALK++  E+  LQT L+E+       +  +
Sbjct  3    ESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELE  62

Query  434  AILGNEIFTHYDRPRISQLCENAGLIQRALENTDDPAVIKR--NIVRTDKLNPEWLMNYF  491
              L      +YD  ++++LCE A L + A+         K   ++++      +  + Y 
Sbjct  63   EFLKK--NNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKD-AIEYA  119

Query  492  GRLSVEQTLDCMDTMLEVNIRQN  514
             + S  +  + +   L  N R  
Sbjct  120  VKSSNPELWEELLEALLDNGRFE  142



Lambda      K        H        a         alpha
   0.319    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1916030344


Query= TCONS_00030321

Length=1693
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463995 pfam13838, Clathrin_H_link, Clathrin-H-link. This shor...  126     5e-35
CDD:459884 pfam00637, Clathrin, Region in Clathrin and VPS. Each ...  122     1e-32


>CDD:463995 pfam13838, Clathrin_H_link, Clathrin-H-link.  This short domain 
is found on clathrins, and often appears on proteins directly 
downstream from the Clathrin-link domain pfam09268.
Length=66

 Score = 126 bits (318),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 47/66 (71%), Positives = 52/66 (79%), Gaps = 0/66 (0%)

Query  373  GLPGADHLYQQQFDNLLAQGNYSEAAKIAANSPRGFLRTPETINRFKNAPQTGQQMSVIL  432
            GLPGAD LY QQF+ LL QG+Y+EAAK+AANSPRG LRTPETI RFK  P    Q+S IL
Sbjct  1    GLPGADDLYFQQFNQLLNQGDYAEAAKVAANSPRGALRTPETIQRFKQLPAQPGQLSPIL  60

Query  433  QYFGML  438
            QYFG L
Sbjct  61   QYFGTL  66


>CDD:459884 pfam00637, Clathrin, Region in Clathrin and VPS.  Each region 
is about 140 amino acids long. The regions are composed of 
multiple alpha helical repeats. They occur in the arm region 
of the Clathrin heavy chain.
Length=142

 Score = 122 bits (308),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 77/141 (55%), Gaps = 6/141 (4%)

Query  1446  TPRIDVNRVVRIFQSSDNIPLIKPFLLNVQSQNKR---AVNDAINDLLIEEEDYKTLRDS  1502
             T  IDV+RVV++F+ +  +  +  +L +   ++ R   A+  A+ +L  + +D + L + 
Sbjct  5     TDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELEEF  64

Query  1503  VDNYDNFDAVQLAQRLEKHDLIFFRQIAANIYRNNKRWEKSISLSKQDKLYKDAIETAAI  1562
             +   +N+D  ++A+  EK DL     I   +Y+    W+++ISL K+   YKDAIE A  
Sbjct  65    LKKNNNYDLEKVAKLCEKADLYEEAVI---LYKKIGNWKEAISLLKKLGDYKDAIEYAVK  121

Query  1563  SGKSDVVEELLRYFVDIGSRE  1583
             S   ++ EELL   +D G  E
Sbjct  122   SSNPELWEELLEALLDNGRFE  142


 Score = 122 bits (308),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 48/142 (34%), Positives = 75/142 (53%), Gaps = 2/142 (1%)

Query  1147  YIRANDPSNYLEVIEIATHAGKDEELVKYLKMARKTLRE--PAIDTALAFCYARLDQLPE  1204
              I + DP +   V+++   AG  EEL+ YL+ A K      PA+ TAL   YA+ D   E
Sbjct  1     LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  1205  LEDFLRTTNVADVETSGDKAYAEGYHQAAKIFYTSISNWAKLATTLVHLEDYQAAVECAR  1264
             LE+FL+  N  D+E           ++ A I Y  I NW +  + L  L DY+ A+E A 
Sbjct  61    LEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAV  120

Query  1265  KANSVKVWKEVNQACVDKKEFR  1286
             K+++ ++W+E+ +A +D   F 
Sbjct  121   KSSNPELWEELLEALLDNGRFE  142


 Score = 116 bits (293),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 40/135 (30%), Positives = 66/135 (49%), Gaps = 4/135 (3%)

Query  859  IPIDELVSEVETRNRLKLLLPFLEATLATGNQ-QQAVYNALAKIYIDSN--NNPEKFLKE  915
            I +  +V   E    L+ L+ +LE+ L   ++   A+  AL ++Y   +     E+FLK+
Sbjct  8    IDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELEEFLKK  67

Query  916  NDMYDTLTVGKYCEKRDP-NLAYIAYRKGQNDLELINITNENAMYRAQARYLVERADPEI  974
            N+ YD   V K CEK D    A I Y+K  N  E I++  +   Y+    Y V+ ++PE+
Sbjct  68   NNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPEL  127

Query  975  WSFVLSENNLHRRPL  989
            W  +L     + R  
Sbjct  128  WEELLEALLDNGRFE  142


 Score = 115 bits (290),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 78/142 (55%), Gaps = 4/142 (3%)

Query  999   PESTEPDKVSVAVKAFLDADLPGELIELLEKIILEPSPFSDNGSLQNLLMLTAAKADK-G  1057
              EST+P  VS  VK F  A L  ELI  LE  + E S   +N +LQ  L+   AK D   
Sbjct  2     IESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSR--ENPALQTALIELYAKYDDPE  59

Query  1058  RLMEYIHQLNEFSADEIAEMCISVGLYEEAFEIYKKVNNYIAAVNVLVENIVSIDRAQEF  1117
              L E++ + N +  +++A++C    LYEEA  +YKK+ N+  A+++L +       A E+
Sbjct  60    ELEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKL-GDYKDAIEY  118

Query  1118  AERVELPDVWSKVAKAQLDGLR  1139
             A +   P++W ++ +A LD  R
Sbjct  119   AVKSSNPELWEELLEALLDNGR  140


 Score = 108 bits (271),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 36/145 (25%), Positives = 65/145 (45%), Gaps = 7/145 (5%)

Query  1293  LNLIVHAEELQDLVRQYERNGYFDELISVLEAGLGL-ERAHMGMFTELGIALSKYHP-DR  1350
             L       ++  +V+ +E+ G  +ELIS LE+ L    R +  + T L    +KY   + 
Sbjct  1     LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  1351  VMEHLKLFWSRINIPKMIRACEEANLWPELVFLYCHYDEWDNAALAMMERAADAWEHHSF  1410
             + E LK   +  ++ K+ + CE+A+L+ E V LY     W  A    + +    ++    
Sbjct  61    LEEFLKKNNN-YDLEKVAKLCEKADLYEEAVILYKKIGNWKEA--ISLLKKLGDYKD--A  115

Query  1411  KDIIVKVANLEIYYRALNFYLQEQP  1435
              +  VK +N E++   L   L    
Sbjct  116   IEYAVKSSNPELWEELLEALLDNGR  140


 Score = 98.5 bits (246),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query  704  ATKFSDLLGPGQLISLFEKYRTAEGLYYYLGSIVNLS--EDPEVHFKYIEAATAMGQITE  761
              + +D +   +++ LFEK    E L  YL S +     E+P +    IE         E
Sbjct  1    LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  762  VERICRESNYYNPEKVKNFLKEAKLTEQLPLIIVCDRFNFIHDLVLYLYQNQQYK-SIEV  820
            +E   +++N Y+ EKV    ++A L E+  ++          + +  L +   YK +IE 
Sbjct  61   LEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKK--IGNWKEAISLLKKLGDYKDAIEY  118

Query  821  YVQRVNPSRTPAVVGGLLDVDCDE  844
             V+  NP     ++  LLD    E
Sbjct  119  AVKSSNPELWEELLEALLDNGRFE  142


 Score = 91.9 bits (229),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 34/143 (24%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query  557  ESGALIDLDRVVDVFLSQNMIQQATSFLLDALKDNRPEHGHLQTRLLEMNLVNAP-QVAD  615
            ES   ID+ RVV +F    ++++  S+L  ALK++  E+  LQT L+E+       +  +
Sbjct  3    ESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELE  62

Query  616  AILGNEIFTHYDRPRISQLCENAGLIQRALENTDDPAVIKR--NIVRTDKLNPEWLMNYF  673
              L      +YD  ++++LCE A L + A+         K   ++++      +  + Y 
Sbjct  63   EFLKK--NNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKD-AIEYA  119

Query  674  GRLSVEQTLDCMDTMLEVNIRQN  696
             + S  +  + +   L  N R  
Sbjct  120  VKSSNPELWEELLEALLDNGRFE  142



Lambda      K        H        a         alpha
   0.319    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2130357132


Query= TCONS_00030322

Length=1679
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463995 pfam13838, Clathrin_H_link, Clathrin-H-link. This shor...  126     5e-35
CDD:459884 pfam00637, Clathrin, Region in Clathrin and VPS. Each ...  121     1e-32


>CDD:463995 pfam13838, Clathrin_H_link, Clathrin-H-link.  This short domain 
is found on clathrins, and often appears on proteins directly 
downstream from the Clathrin-link domain pfam09268.
Length=66

 Score = 126 bits (318),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 47/66 (71%), Positives = 52/66 (79%), Gaps = 0/66 (0%)

Query  359  GLPGADHLYQQQFDNLLAQGNYSEAAKIAANSPRGFLRTPETINRFKNAPQTGQQMSVIL  418
            GLPGAD LY QQF+ LL QG+Y+EAAK+AANSPRG LRTPETI RFK  P    Q+S IL
Sbjct  1    GLPGADDLYFQQFNQLLNQGDYAEAAKVAANSPRGALRTPETIQRFKQLPAQPGQLSPIL  60

Query  419  QYFGML  424
            QYFG L
Sbjct  61   QYFGTL  66


>CDD:459884 pfam00637, Clathrin, Region in Clathrin and VPS.  Each region 
is about 140 amino acids long. The regions are composed of 
multiple alpha helical repeats. They occur in the arm region 
of the Clathrin heavy chain.
Length=142

 Score = 121 bits (307),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 77/141 (55%), Gaps = 6/141 (4%)

Query  1432  TPRIDVNRVVRIFQSSDNIPLIKPFLLNVQSQNKR---AVNDAINDLLIEEEDYKTLRDS  1488
             T  IDV+RVV++F+ +  +  +  +L +   ++ R   A+  A+ +L  + +D + L + 
Sbjct  5     TDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELEEF  64

Query  1489  VDNYDNFDAVQLAQRLEKHDLIFFRQIAANIYRNNKRWEKSISLSKQDKLYKDAIETAAI  1548
             +   +N+D  ++A+  EK DL     I   +Y+    W+++ISL K+   YKDAIE A  
Sbjct  65    LKKNNNYDLEKVAKLCEKADLYEEAVI---LYKKIGNWKEAISLLKKLGDYKDAIEYAVK  121

Query  1549  SGKSDVVEELLRYFVDIGSRE  1569
             S   ++ EELL   +D G  E
Sbjct  122   SSNPELWEELLEALLDNGRFE  142


 Score = 121 bits (307),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 48/142 (34%), Positives = 75/142 (53%), Gaps = 2/142 (1%)

Query  1133  YIRANDPSNYLEVIEIATHAGKDEELVKYLKMARKTLRE--PAIDTALAFCYARLDQLPE  1190
              I + DP +   V+++   AG  EEL+ YL+ A K      PA+ TAL   YA+ D   E
Sbjct  1     LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  1191  LEDFLRTTNVADVETSGDKAYAEGYHQAAKIFYTSISNWAKLATTLVHLEDYQAAVECAR  1250
             LE+FL+  N  D+E           ++ A I Y  I NW +  + L  L DY+ A+E A 
Sbjct  61    LEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAV  120

Query  1251  KANSVKVWKEVNQACVDKKEFR  1272
             K+++ ++W+E+ +A +D   F 
Sbjct  121   KSSNPELWEELLEALLDNGRFE  142


 Score = 116 bits (292),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 40/135 (30%), Positives = 66/135 (49%), Gaps = 4/135 (3%)

Query  845  IPIDELVSEVETRNRLKLLLPFLEATLATGNQ-QQAVYNALAKIYIDSN--NNPEKFLKE  901
            I +  +V   E    L+ L+ +LE+ L   ++   A+  AL ++Y   +     E+FLK+
Sbjct  8    IDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELEEFLKK  67

Query  902  NDMYDTLTVGKYCEKRDP-NLAYIAYRKGQNDLELINITNENAMYRAQARYLVERADPEI  960
            N+ YD   V K CEK D    A I Y+K  N  E I++  +   Y+    Y V+ ++PE+
Sbjct  68   NNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPEL  127

Query  961  WSFVLSENNLHRRPL  975
            W  +L     + R  
Sbjct  128  WEELLEALLDNGRFE  142


 Score = 115 bits (290),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 78/142 (55%), Gaps = 4/142 (3%)

Query  985   PESTEPDKVSVAVKAFLDADLPGELIELLEKIILEPSPFSDNGSLQNLLMLTAAKADK-G  1043
              EST+P  VS  VK F  A L  ELI  LE  + E S   +N +LQ  L+   AK D   
Sbjct  2     IESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSR--ENPALQTALIELYAKYDDPE  59

Query  1044  RLMEYIHQLNEFSADEIAEMCISVGLYEEAFEIYKKVNNYIAAVNVLVENIVSIDRAQEF  1103
              L E++ + N +  +++A++C    LYEEA  +YKK+ N+  A+++L +       A E+
Sbjct  60    ELEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKL-GDYKDAIEY  118

Query  1104  AERVELPDVWSKVAKAQLDGLR  1125
             A +   P++W ++ +A LD  R
Sbjct  119   AVKSSNPELWEELLEALLDNGR  140


 Score = 107 bits (270),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 36/145 (25%), Positives = 65/145 (45%), Gaps = 7/145 (5%)

Query  1279  LNLIVHAEELQDLVRQYERNGYFDELISVLEAGLGL-ERAHMGMFTELGIALSKYHP-DR  1336
             L       ++  +V+ +E+ G  +ELIS LE+ L    R +  + T L    +KY   + 
Sbjct  1     LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  1337  VMEHLKLFWSRINIPKMIRACEEANLWPELVFLYCHYDEWDNAALAMMERAADAWEHHSF  1396
             + E LK   +  ++ K+ + CE+A+L+ E V LY     W  A    + +    ++    
Sbjct  61    LEEFLKKNNN-YDLEKVAKLCEKADLYEEAVILYKKIGNWKEA--ISLLKKLGDYKD--A  115

Query  1397  KDIIVKVANLEIYYRALNFYLQEQP  1421
              +  VK +N E++   L   L    
Sbjct  116   IEYAVKSSNPELWEELLEALLDNGR  140


 Score = 98.1 bits (245),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query  690  ATKFSDLLGPGQLISLFEKYRTAEGLYYYLGSIVNLS--EDPEVHFKYIEAATAMGQITE  747
              + +D +   +++ LFEK    E L  YL S +     E+P +    IE         E
Sbjct  1    LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  748  VERICRESNYYNPEKVKNFLKEAKLTEQLPLIIVCDRFNFIHDLVLYLYQNQQYK-SIEV  806
            +E   +++N Y+ EKV    ++A L E+  ++          + +  L +   YK +IE 
Sbjct  61   LEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKK--IGNWKEAISLLKKLGDYKDAIEY  118

Query  807  YVQRVNPSRTPAVVGGLLDVDCDE  830
             V+  NP     ++  LLD    E
Sbjct  119  AVKSSNPELWEELLEALLDNGRFE  142


 Score = 91.9 bits (229),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 34/143 (24%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query  543  ESGALIDLDRVVDVFLSQNMIQQATSFLLDALKDNRPEHGHLQTRLLEMNLVNAP-QVAD  601
            ES   ID+ RVV +F    ++++  S+L  ALK++  E+  LQT L+E+       +  +
Sbjct  3    ESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELE  62

Query  602  AILGNEIFTHYDRPRISQLCENAGLIQRALENTDDPAVIKR--NIVRTDKLNPEWLMNYF  659
              L      +YD  ++++LCE A L + A+         K   ++++      +  + Y 
Sbjct  63   EFLKK--NNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKD-AIEYA  119

Query  660  GRLSVEQTLDCMDTMLEVNIRQN  682
             + S  +  + +   L  N R  
Sbjct  120  VKSSNPELWEELLEALLDNGRFE  142



Lambda      K        H        a         alpha
   0.319    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2111634596


Query= TCONS_00030323

Length=1606
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463995 pfam13838, Clathrin_H_link, Clathrin-H-link. This shor...  126     5e-35
CDD:459884 pfam00637, Clathrin, Region in Clathrin and VPS. Each ...  121     1e-32


>CDD:463995 pfam13838, Clathrin_H_link, Clathrin-H-link.  This short domain 
is found on clathrins, and often appears on proteins directly 
downstream from the Clathrin-link domain pfam09268.
Length=66

 Score = 126 bits (318),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 47/66 (71%), Positives = 52/66 (79%), Gaps = 0/66 (0%)

Query  286  GLPGADHLYQQQFDNLLAQGNYSEAAKIAANSPRGFLRTPETINRFKNAPQTGQQMSVIL  345
            GLPGAD LY QQF+ LL QG+Y+EAAK+AANSPRG LRTPETI RFK  P    Q+S IL
Sbjct  1    GLPGADDLYFQQFNQLLNQGDYAEAAKVAANSPRGALRTPETIQRFKQLPAQPGQLSPIL  60

Query  346  QYFGML  351
            QYFG L
Sbjct  61   QYFGTL  66


>CDD:459884 pfam00637, Clathrin, Region in Clathrin and VPS.  Each region 
is about 140 amino acids long. The regions are composed of 
multiple alpha helical repeats. They occur in the arm region 
of the Clathrin heavy chain.
Length=142

 Score = 121 bits (307),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 77/141 (55%), Gaps = 6/141 (4%)

Query  1359  TPRIDVNRVVRIFQSSDNIPLIKPFLLNVQSQNKR---AVNDAINDLLIEEEDYKTLRDS  1415
             T  IDV+RVV++F+ +  +  +  +L +   ++ R   A+  A+ +L  + +D + L + 
Sbjct  5     TDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELEEF  64

Query  1416  VDNYDNFDAVQLAQRLEKHDLIFFRQIAANIYRNNKRWEKSISLSKQDKLYKDAIETAAI  1475
             +   +N+D  ++A+  EK DL     I   +Y+    W+++ISL K+   YKDAIE A  
Sbjct  65    LKKNNNYDLEKVAKLCEKADLYEEAVI---LYKKIGNWKEAISLLKKLGDYKDAIEYAVK  121

Query  1476  SGKSDVVEELLRYFVDIGSRE  1496
             S   ++ EELL   +D G  E
Sbjct  122   SSNPELWEELLEALLDNGRFE  142


 Score = 121 bits (306),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 48/142 (34%), Positives = 75/142 (53%), Gaps = 2/142 (1%)

Query  1060  YIRANDPSNYLEVIEIATHAGKDEELVKYLKMARKTLRE--PAIDTALAFCYARLDQLPE  1117
              I + DP +   V+++   AG  EEL+ YL+ A K      PA+ TAL   YA+ D   E
Sbjct  1     LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  1118  LEDFLRTTNVADVETSGDKAYAEGYHQAAKIFYTSISNWAKLATTLVHLEDYQAAVECAR  1177
             LE+FL+  N  D+E           ++ A I Y  I NW +  + L  L DY+ A+E A 
Sbjct  61    LEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAV  120

Query  1178  KANSVKVWKEVNQACVDKKEFR  1199
             K+++ ++W+E+ +A +D   F 
Sbjct  121   KSSNPELWEELLEALLDNGRFE  142


 Score = 116 bits (292),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 40/135 (30%), Positives = 66/135 (49%), Gaps = 4/135 (3%)

Query  772  IPIDELVSEVETRNRLKLLLPFLEATLATGNQ-QQAVYNALAKIYIDSN--NNPEKFLKE  828
            I +  +V   E    L+ L+ +LE+ L   ++   A+  AL ++Y   +     E+FLK+
Sbjct  8    IDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELEEFLKK  67

Query  829  NDMYDTLTVGKYCEKRDP-NLAYIAYRKGQNDLELINITNENAMYRAQARYLVERADPEI  887
            N+ YD   V K CEK D    A I Y+K  N  E I++  +   Y+    Y V+ ++PE+
Sbjct  68   NNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPEL  127

Query  888  WSFVLSENNLHRRPL  902
            W  +L     + R  
Sbjct  128  WEELLEALLDNGRFE  142


 Score = 115 bits (290),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 78/142 (55%), Gaps = 4/142 (3%)

Query  912   PESTEPDKVSVAVKAFLDADLPGELIELLEKIILEPSPFSDNGSLQNLLMLTAAKADK-G  970
              EST+P  VS  VK F  A L  ELI  LE  + E S   +N +LQ  L+   AK D   
Sbjct  2     IESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSR--ENPALQTALIELYAKYDDPE  59

Query  971   RLMEYIHQLNEFSADEIAEMCISVGLYEEAFEIYKKVNNYIAAVNVLVENIVSIDRAQEF  1030
              L E++ + N +  +++A++C    LYEEA  +YKK+ N+  A+++L +       A E+
Sbjct  60    ELEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKL-GDYKDAIEY  118

Query  1031  AERVELPDVWSKVAKAQLDGLR  1052
             A +   P++W ++ +A LD  R
Sbjct  119   AVKSSNPELWEELLEALLDNGR  140


 Score = 107 bits (270),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 36/145 (25%), Positives = 65/145 (45%), Gaps = 7/145 (5%)

Query  1206  LNLIVHAEELQDLVRQYERNGYFDELISVLEAGLGL-ERAHMGMFTELGIALSKYHP-DR  1263
             L       ++  +V+ +E+ G  +ELIS LE+ L    R +  + T L    +KY   + 
Sbjct  1     LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  1264  VMEHLKLFWSRINIPKMIRACEEANLWPELVFLYCHYDEWDNAALAMMERAADAWEHHSF  1323
             + E LK   +  ++ K+ + CE+A+L+ E V LY     W  A    + +    ++    
Sbjct  61    LEEFLKKNNN-YDLEKVAKLCEKADLYEEAVILYKKIGNWKEA--ISLLKKLGDYKD--A  115

Query  1324  KDIIVKVANLEIYYRALNFYLQEQP  1348
              +  VK +N E++   L   L    
Sbjct  116   IEYAVKSSNPELWEELLEALLDNGR  140


 Score = 98.1 bits (245),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query  617  ATKFSDLLGPGQLISLFEKYRTAEGLYYYLGSIVNLS--EDPEVHFKYIEAATAMGQITE  674
              + +D +   +++ LFEK    E L  YL S +     E+P +    IE         E
Sbjct  1    LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  675  VERICRESNYYNPEKVKNFLKEAKLTEQLPLIIVCDRFNFIHDLVLYLYQNQQYK-SIEV  733
            +E   +++N Y+ EKV    ++A L E+  ++          + +  L +   YK +IE 
Sbjct  61   LEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKK--IGNWKEAISLLKKLGDYKDAIEY  118

Query  734  YVQRVNPSRTPAVVGGLLDVDCDE  757
             V+  NP     ++  LLD    E
Sbjct  119  AVKSSNPELWEELLEALLDNGRFE  142


 Score = 91.9 bits (229),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 34/143 (24%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query  470  ESGALIDLDRVVDVFLSQNMIQQATSFLLDALKDNRPEHGHLQTRLLEMNLVNAP-QVAD  528
            ES   ID+ RVV +F    ++++  S+L  ALK++  E+  LQT L+E+       +  +
Sbjct  3    ESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELE  62

Query  529  AILGNEIFTHYDRPRISQLCENAGLIQRALENTDDPAVIKR--NIVRTDKLNPEWLMNYF  586
              L      +YD  ++++LCE A L + A+         K   ++++      +  + Y 
Sbjct  63   EFLKK--NNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKD-AIEYA  119

Query  587  GRLSVEQTLDCMDTMLEVNIRQN  609
             + S  +  + +   L  N R  
Sbjct  120  VKSSNPELWEELLEALLDNGRFE  142



Lambda      K        H        a         alpha
   0.319    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0779    0.140     1.90     42.6     43.6 

Effective search space used: 2044941734


Query= TCONS_00030324

Length=1405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463995 pfam13838, Clathrin_H_link, Clathrin-H-link. This shor...  125     8e-35
CDD:459884 pfam00637, Clathrin, Region in Clathrin and VPS. Each ...  120     6e-32


>CDD:463995 pfam13838, Clathrin_H_link, Clathrin-H-link.  This short domain 
is found on clathrins, and often appears on proteins directly 
downstream from the Clathrin-link domain pfam09268.
Length=66

 Score = 125 bits (316),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 47/66 (71%), Positives = 52/66 (79%), Gaps = 0/66 (0%)

Query  191  GLPGADHLYQQQFDNLLAQGNYSEAAKIAANSPRGFLRTPETINRFKNAPQTGQQMSVIL  250
            GLPGAD LY QQF+ LL QG+Y+EAAK+AANSPRG LRTPETI RFK  P    Q+S IL
Sbjct  1    GLPGADDLYFQQFNQLLNQGDYAEAAKVAANSPRGALRTPETIQRFKQLPAQPGQLSPIL  60

Query  251  QYFGML  256
            QYFG L
Sbjct  61   QYFGTL  66


>CDD:459884 pfam00637, Clathrin, Region in Clathrin and VPS.  Each region 
is about 140 amino acids long. The regions are composed of 
multiple alpha helical repeats. They occur in the arm region 
of the Clathrin heavy chain.
Length=142

 Score = 120 bits (302),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 48/142 (34%), Positives = 75/142 (53%), Gaps = 2/142 (1%)

Query  965   YIRANDPSNYLEVIEIATHAGKDEELVKYLKMARKTLRE--PAIDTALAFCYARLDQLPE  1022
              I + DP +   V+++   AG  EEL+ YL+ A K      PA+ TAL   YA+ D   E
Sbjct  1     LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  1023  LEDFLRTTNVADVETSGDKAYAEGYHQAAKIFYTSISNWAKLATTLVHLEDYQAAVECAR  1082
             LE+FL+  N  D+E           ++ A I Y  I NW +  + L  L DY+ A+E A 
Sbjct  61    LEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAV  120

Query  1083  KANSVKVWKEVNQACVDKKEFR  1104
             K+++ ++W+E+ +A +D   F 
Sbjct  121   KSSNPELWEELLEALLDNGRFE  142


 Score = 114 bits (288),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 41/133 (31%), Positives = 73/133 (55%), Gaps = 6/133 (5%)

Query  1264  TPRIDVNRVVRIFQSSDNIPLIKPFLLNVQSQNKR---AVNDAINDLLIEEEDYKTLRDS  1320
             T  IDV+RVV++F+ +  +  +  +L +   ++ R   A+  A+ +L  + +D + L + 
Sbjct  5     TDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELEEF  64

Query  1321  VDNYDNFDAVQLAQRLEKHDLIFFRQIAANIYRNNKRWEKSISLSKQDKLYKDAIETAAI  1380
             +   +N+D  ++A+  EK DL     I   +Y+    W+++ISL K+   YKDAIE A  
Sbjct  65    LKKNNNYDLEKVAKLCEKADLYEEAVI---LYKKIGNWKEAISLLKKLGDYKDAIEYAVK  121

Query  1381  SGKSDVVEELLRY  1393
             S   ++ EELL  
Sbjct  122   SSNPELWEELLEA  134


 Score = 114 bits (288),  Expect = 5e-30, Method: Composition-based stats.
 Identities = 40/135 (30%), Positives = 66/135 (49%), Gaps = 4/135 (3%)

Query  677  IPIDELVSEVETRNRLKLLLPFLEATLATGNQ-QQAVYNALAKIYIDSN--NNPEKFLKE  733
            I +  +V   E    L+ L+ +LE+ L   ++   A+  AL ++Y   +     E+FLK+
Sbjct  8    IDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELEEFLKK  67

Query  734  NDMYDTLTVGKYCEKRDP-NLAYIAYRKGQNDLELINITNENAMYRAQARYLVERADPEI  792
            N+ YD   V K CEK D    A I Y+K  N  E I++  +   Y+    Y V+ ++PE+
Sbjct  68   NNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPEL  127

Query  793  WSFVLSENNLHRRPL  807
            W  +L     + R  
Sbjct  128  WEELLEALLDNGRFE  142


 Score = 113 bits (285),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 78/142 (55%), Gaps = 4/142 (3%)

Query  817  PESTEPDKVSVAVKAFLDADLPGELIELLEKIILEPSPFSDNGSLQNLLMLTAAKADK-G  875
             EST+P  VS  VK F  A L  ELI  LE  + E S   +N +LQ  L+   AK D   
Sbjct  2    IESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSR--ENPALQTALIELYAKYDDPE  59

Query  876  RLMEYIHQLNEFSADEIAEMCISVGLYEEAFEIYKKVNNYIAAVNVLVENIVSIDRAQEF  935
             L E++ + N +  +++A++C    LYEEA  +YKK+ N+  A+++L +       A E+
Sbjct  60   ELEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKL-GDYKDAIEY  118

Query  936  AERVELPDVWSKVAKAQLDGLR  957
            A +   P++W ++ +A LD  R
Sbjct  119  AVKSSNPELWEELLEALLDNGR  140


 Score = 106 bits (266),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 36/145 (25%), Positives = 65/145 (45%), Gaps = 7/145 (5%)

Query  1111  LNLIVHAEELQDLVRQYERNGYFDELISVLEAGLGL-ERAHMGMFTELGIALSKYHP-DR  1168
             L       ++  +V+ +E+ G  +ELIS LE+ L    R +  + T L    +KY   + 
Sbjct  1     LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  1169  VMEHLKLFWSRINIPKMIRACEEANLWPELVFLYCHYDEWDNAALAMMERAADAWEHHSF  1228
             + E LK   +  ++ K+ + CE+A+L+ E V LY     W  A    + +    ++    
Sbjct  61    LEEFLKKNNN-YDLEKVAKLCEKADLYEEAVILYKKIGNWKEA--ISLLKKLGDYKD--A  115

Query  1229  KDIIVKVANLEIYYRALNFYLQEQP  1253
              +  VK +N E++   L   L    
Sbjct  116   IEYAVKSSNPELWEELLEALLDNGR  140


 Score = 96.6 bits (241),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query  522  ATKFSDLLGPGQLISLFEKYRTAEGLYYYLGSIVNLS--EDPEVHFKYIEAATAMGQITE  579
              + +D +   +++ LFEK    E L  YL S +     E+P +    IE         E
Sbjct  1    LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEE  60

Query  580  VERICRESNYYNPEKVKNFLKEAKLTEQLPLIIVCDRFNFIHDLVLYLYQNQQYK-SIEV  638
            +E   +++N Y+ EKV    ++A L E+  ++          + +  L +   YK +IE 
Sbjct  61   LEEFLKKNNNYDLEKVAKLCEKADLYEEAVILYKK--IGNWKEAISLLKKLGDYKDAIEY  118

Query  639  YVQRVNPSRTPAVVGGLLDVDCDE  662
             V+  NP     ++  LLD    E
Sbjct  119  AVKSSNPELWEELLEALLDNGRFE  142


 Score = 90.4 bits (225),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 34/143 (24%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query  375  ESGALIDLDRVVDVFLSQNMIQQATSFLLDALKDNRPEHGHLQTRLLEMNLVNAP-QVAD  433
            ES   ID+ RVV +F    ++++  S+L  ALK++  E+  LQT L+E+       +  +
Sbjct  3    ESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAKYDDPEELE  62

Query  434  AILGNEIFTHYDRPRISQLCENAGLIQRALENTDDPAVIKR--NIVRTDKLNPEWLMNYF  491
              L      +YD  ++++LCE A L + A+         K   ++++      +  + Y 
Sbjct  63   EFLKK--NNNYDLEKVAKLCEKADLYEEAVILYKKIGNWKEAISLLKKLGDYKD-AIEYA  119

Query  492  GRLSVEQTLDCMDTMLEVNIRQN  514
             + S  +  + +   L  N R  
Sbjct  120  VKSSNPELWEELLEALLDNGRFE  142



Lambda      K        H        a         alpha
   0.319    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1799216200


Query= TCONS_00034908

Length=1193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460557 pfam02436, PYC_OADA, Conserved carboxylase domain. Thi...  311     3e-99
CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L...  254     2e-78
CDD:425585 pfam00289, Biotin_carb_N, Biotin carboxylase, N-termin...  183     9e-55
CDD:426981 pfam02785, Biotin_carb_C, Biotin carboxylase C-termina...  150     4e-43
CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  119     2e-30
CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. Thi...  85.7    7e-21


>CDD:460557 pfam02436, PYC_OADA, Conserved carboxylase domain.  This domain 
represents a conserved region in pyruvate carboxylase (PYC), 
oxaloacetate decarboxylase alpha chain (OADA), and transcarboxylase 
5s subunit. The domain is found adjacent to the 
HMGL-like domain (pfam00682) and often close to the biotin_lipoyl 
domain (pfam00364) of biotin requiring enzymes.
Length=201

 Score = 311 bits (800),  Expect = 3e-99, Method: Composition-based stats.
 Identities = 106/201 (53%), Positives = 136/201 (68%), Gaps = 1/201 (0%)

Query  874   VYEHEIPGGQLTNLLFQASQLGLGQQWAETKKAYESANDLLGDIVKVTPTSKVVGDLAQF  933
             VY+HEIPGGQL+NL  QA + GLG ++ E  K Y   N  LGDI KVTP+S++VGD A F
Sbjct  1     VYKHEIPGGQLSNLQQQAKEQGLGDRFDEVLKEYPRVNKDLGDIPKVTPSSQIVGDQAVF  60

Query  934   MVSNKLTPEDVVARAGELDFPGSVLEFLEGLMGQPFGGFPEPLRSKALRGRRKLDKRPGL  993
              V N LTPEDV+      D P SV+++L+G  GQP GGFPE L+ K L+G   +  RPG 
Sbjct  61    NVLNNLTPEDVLGEGRYKDIPDSVVDYLKGEYGQPPGGFPEELQKKVLKGEEPITCRPGD  120

Query  994   YLEPLDLAKIKNQIREKYG-SATEYDVASYAMYPKVFEDYKKFVQKFGDLSILPTRYFLA  1052
              L P+DL K++ ++ EK G   TE DV SYA+YPKV E + KF +K+GD+S+LPT  F  
Sbjct  121   LLPPVDLEKLRKELEEKAGRETTEEDVLSYALYPKVAEKFLKFREKYGDVSVLPTPVFFY  180

Query  1053  KPEIGEEFHVELEQGKVLILK  1073
               E GEE+ VE+E GK LI+K
Sbjct  181   GLEPGEEYEVEIEGGKYLIVK  201


>CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, 
ATP binding domain.  Carbamoyl-phosphate synthase catalyzes 
the ATP-dependent synthesis of carbamyl-phosphate from glutamine 
or ammonia and bicarbonate. This important enzyme initiates 
both the urea cycle and the biosynthesis of arginine and/or 
pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme 
in prokaryotes is a heterodimer of a small and large chain. 
The small chain promotes the hydrolysis of glutamine to 
ammonia, which is used by the large chain to synthesize carbamoyl 
phosphate. See pfam00988. The small chain has a GATase 
domain in the carboxyl terminus. See pfam00117. The ATP binding 
domain (this one) has an ATP-grasp fold.
Length=209

 Score = 254 bits (652),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 96/196 (49%), Positives = 128/196 (65%), Gaps = 1/196 (1%)

Query  158  DKVSARQLAIKCGVPVVPGTPGPVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRDQ  217
            DKV  +    + GVP VPGT GPVE  EE  A     G+P+IIKAAFGGGG GM + R++
Sbjct  1    DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNE  60

Query  218  ADLRDAFERATSEARSAFGNGTVFVERFLDRPKHIEVQLLGDNHGNVIHLFERDCSVQRR  277
             +L + F  A +EA +AFGN  V VE+ L  PKHIE Q+L D HGN I +  R+CS QRR
Sbjct  61   EELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQRR  120

Query  278  HQKVVEIAPAKDLPNDVRDRILADAVKLAKTVNYRNAGTAEFLVDQQN-RYYFIEINPRI  336
             QK +E+AP++ L ++ R  +   AVK+A+ + Y  AGT EF +D  +  YYFIE+N R+
Sbjct  121  TQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNTRL  180

Query  337  QVEHTITEEITGIDIV  352
            QVEH + E+ TG D+ 
Sbjct  181  QVEHALAEKATGYDLA  196


>CDD:425585 pfam00289, Biotin_carb_N, Biotin carboxylase, N-terminal domain. 
 This domain is structurally related to the PreATP-grasp 
domain. The family contains the N-terminus of biotin carboxylase 
enzymes, and propionyl-CoA carboxylase A chain.
Length=108

 Score = 183 bits (468),  Expect = 9e-55, Method: Composition-based stats.
 Identities = 59/111 (53%), Positives = 75/111 (68%), Gaps = 3/111 (3%)

Query  42   FQKILVANRGEIPIRIFRTAHELSLQTVAIYSYEDRLSMHRQKADEAYMIGHRGQYTPVA  101
             +K+L+ANRGEI +RI R   EL ++TVA+YS  D  S+H + ADEA  +G         
Sbjct  1    IKKVLIANRGEIAVRIIRACRELGIRTVAVYSEADANSLHVRLADEAVCLGPG---PASE  57

Query  102  AYLAIDEIVKIAQEHGVHLIHPGYGFLSENAEFARKVENAGIVFVGPTPET  152
            +YL ID I+  A+E G   IHPGYGFLSENAEFAR  E AGI+F+GP+PE 
Sbjct  58   SYLNIDAIIDAAKETGADAIHPGYGFLSENAEFARACEEAGIIFIGPSPEA  108


>CDD:426981 pfam02785, Biotin_carb_C, Biotin carboxylase C-terminal domain. 
 Biotin carboxylase is a component of the acetyl-CoA carboxylase 
multi-component enzyme which catalyzes the first committed 
step in fatty acid synthesis in animals, plants and bacteria. 
Most of the active site residues reported in reference 
are in this C-terminal domain.
Length=108

 Score = 150 bits (381),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 69/109 (63%), Gaps = 1/109 (1%)

Query  382  QCRITTEDPANGFRPDTGKIEVYRSAGGNGVRLDGGNGFAGAIISPHYDSMLVKCTCRGS  441
            + RI  EDP N F P  GK+  YR  GG GVR+D G  +AG  +SP+YDSM+ K    G 
Sbjct  1    EARIYAEDPDNNFLPSPGKVTRYRFPGGPGVRVDSG-VYAGYTVSPYYDSMIAKLIVHGP  59

Query  442  TYEIARRKVVRALVEFRIRGVKTNIPFLTSLLSHPTFIDGTCWTTFIDD  490
            T E A  ++ RAL EFRI GVKTNIPFL ++L HP F  G   T F+++
Sbjct  60   TREEAIARLRRALAEFRIEGVKTNIPFLRAILEHPDFRAGEVDTGFLEE  108


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 119 bits (301),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 70/281 (25%), Positives = 117/281 (42%), Gaps = 30/281 (11%)

Query  581  IMDTTWRDAHQSLLATRVRTIDLLNIAKETSHAYANAYSLECWGGATFDVAMRFLYEDPW  640
            I DTT RD  Q+L        + L IA+          +L+  G    +V      ED +
Sbjct  4    ICDTTLRDGEQAL-GVAFSIDEKLAIAR----------ALDAAGVDEIEVGFPAASEDDF  52

Query  641  DRLRKLRKAVPNIPFQMLLRGANGVAYSSLPDNAIYHFCKQAKKCGVDIFRVFDALND--  698
            + +R + K +P+    +L R           ++ I    +  K  G     VF A +D  
Sbjct  53   EVVRAIAKVIPHARILVLCRAR---------EHDIKAAVEALKGAGAVRVHVFIATSDLH  103

Query  699  ------VDQLEVGIKAVQAAEGVVEATICYSGDMLNPKKKYNLEYYLALVDKIVKLNPHI  752
                   D+ EV  +AV A +      I           + + E+   +V+  ++     
Sbjct  104  RKYKLGKDREEVAKRAVAAVKAARSRGIDVEFS-PEDASRTDPEFLAEVVEAAIEAGATR  162

Query  753  LGIKDMAGVLKPQAARLLVGSIRERYPD-LPIHVHTHDSAGTGVASMVACAQAGADAVDA  811
            + I D  GVL P  A  L+ +++ R P+   I VH H+  G  VA+ +A  +AGAD VD 
Sbjct  163  INIPDTVGVLTPNEAAELISALKARVPNKAIISVHCHNDLGMAVANSLAAVEAGADRVDG  222

Query  812  ATDSMSGMTSQPSVGAILASLEGTEHDPKLNLAHVRAIDSY  852
              + +       ++  + A+LEG   D  L+L  +R+I + 
Sbjct  223  TVNGIGERAGNAALEEVAAALEGLGVDTGLDLQRLRSIANL  263


>CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme.  This family 
covers two Prosite entries, the conserved lysine residue 
binds biotin in one group and lipoic acid in the other. Note 
that the HMM does not currently recognize the Glycine cleavage 
system H proteins.
Length=73

 Score = 85.7 bits (213),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 5/72 (7%)

Query  1124  QIGAPMSGV-----VVEIRVHEGSEVKKGDPVAVLSAMKMEMVISAPHSGKVSGLLVKEG  1178
             +I +PM G      VVE  V  G +VK G P+A + AMKMEM I AP +G V  +LV EG
Sbjct  2     EIKSPMIGESVREGVVEWLVKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPEG  61

Query  1179  DSVDGQDLICKI  1190
             D+V+  D + KI
Sbjct  62    DTVEVGDPLAKI  73



Lambda      K        H        a         alpha
   0.319    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1530276848


Query= TCONS_00030327

Length=1193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460557 pfam02436, PYC_OADA, Conserved carboxylase domain. Thi...  311     3e-99
CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L...  254     2e-78
CDD:425585 pfam00289, Biotin_carb_N, Biotin carboxylase, N-termin...  183     9e-55
CDD:426981 pfam02785, Biotin_carb_C, Biotin carboxylase C-termina...  150     4e-43
CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  119     2e-30
CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. Thi...  85.7    7e-21


>CDD:460557 pfam02436, PYC_OADA, Conserved carboxylase domain.  This domain 
represents a conserved region in pyruvate carboxylase (PYC), 
oxaloacetate decarboxylase alpha chain (OADA), and transcarboxylase 
5s subunit. The domain is found adjacent to the 
HMGL-like domain (pfam00682) and often close to the biotin_lipoyl 
domain (pfam00364) of biotin requiring enzymes.
Length=201

 Score = 311 bits (800),  Expect = 3e-99, Method: Composition-based stats.
 Identities = 106/201 (53%), Positives = 136/201 (68%), Gaps = 1/201 (0%)

Query  874   VYEHEIPGGQLTNLLFQASQLGLGQQWAETKKAYESANDLLGDIVKVTPTSKVVGDLAQF  933
             VY+HEIPGGQL+NL  QA + GLG ++ E  K Y   N  LGDI KVTP+S++VGD A F
Sbjct  1     VYKHEIPGGQLSNLQQQAKEQGLGDRFDEVLKEYPRVNKDLGDIPKVTPSSQIVGDQAVF  60

Query  934   MVSNKLTPEDVVARAGELDFPGSVLEFLEGLMGQPFGGFPEPLRSKALRGRRKLDKRPGL  993
              V N LTPEDV+      D P SV+++L+G  GQP GGFPE L+ K L+G   +  RPG 
Sbjct  61    NVLNNLTPEDVLGEGRYKDIPDSVVDYLKGEYGQPPGGFPEELQKKVLKGEEPITCRPGD  120

Query  994   YLEPLDLAKIKNQIREKYG-SATEYDVASYAMYPKVFEDYKKFVQKFGDLSILPTRYFLA  1052
              L P+DL K++ ++ EK G   TE DV SYA+YPKV E + KF +K+GD+S+LPT  F  
Sbjct  121   LLPPVDLEKLRKELEEKAGRETTEEDVLSYALYPKVAEKFLKFREKYGDVSVLPTPVFFY  180

Query  1053  KPEIGEEFHVELEQGKVLILK  1073
               E GEE+ VE+E GK LI+K
Sbjct  181   GLEPGEEYEVEIEGGKYLIVK  201


>CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, 
ATP binding domain.  Carbamoyl-phosphate synthase catalyzes 
the ATP-dependent synthesis of carbamyl-phosphate from glutamine 
or ammonia and bicarbonate. This important enzyme initiates 
both the urea cycle and the biosynthesis of arginine and/or 
pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme 
in prokaryotes is a heterodimer of a small and large chain. 
The small chain promotes the hydrolysis of glutamine to 
ammonia, which is used by the large chain to synthesize carbamoyl 
phosphate. See pfam00988. The small chain has a GATase 
domain in the carboxyl terminus. See pfam00117. The ATP binding 
domain (this one) has an ATP-grasp fold.
Length=209

 Score = 254 bits (652),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 96/196 (49%), Positives = 128/196 (65%), Gaps = 1/196 (1%)

Query  158  DKVSARQLAIKCGVPVVPGTPGPVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRDQ  217
            DKV  +    + GVP VPGT GPVE  EE  A     G+P+IIKAAFGGGG GM + R++
Sbjct  1    DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNE  60

Query  218  ADLRDAFERATSEARSAFGNGTVFVERFLDRPKHIEVQLLGDNHGNVIHLFERDCSVQRR  277
             +L + F  A +EA +AFGN  V VE+ L  PKHIE Q+L D HGN I +  R+CS QRR
Sbjct  61   EELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQRR  120

Query  278  HQKVVEIAPAKDLPNDVRDRILADAVKLAKTVNYRNAGTAEFLVDQQN-RYYFIEINPRI  336
             QK +E+AP++ L ++ R  +   AVK+A+ + Y  AGT EF +D  +  YYFIE+N R+
Sbjct  121  TQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNTRL  180

Query  337  QVEHTITEEITGIDIV  352
            QVEH + E+ TG D+ 
Sbjct  181  QVEHALAEKATGYDLA  196


>CDD:425585 pfam00289, Biotin_carb_N, Biotin carboxylase, N-terminal domain. 
 This domain is structurally related to the PreATP-grasp 
domain. The family contains the N-terminus of biotin carboxylase 
enzymes, and propionyl-CoA carboxylase A chain.
Length=108

 Score = 183 bits (468),  Expect = 9e-55, Method: Composition-based stats.
 Identities = 59/111 (53%), Positives = 75/111 (68%), Gaps = 3/111 (3%)

Query  42   FQKILVANRGEIPIRIFRTAHELSLQTVAIYSYEDRLSMHRQKADEAYMIGHRGQYTPVA  101
             +K+L+ANRGEI +RI R   EL ++TVA+YS  D  S+H + ADEA  +G         
Sbjct  1    IKKVLIANRGEIAVRIIRACRELGIRTVAVYSEADANSLHVRLADEAVCLGPG---PASE  57

Query  102  AYLAIDEIVKIAQEHGVHLIHPGYGFLSENAEFARKVENAGIVFVGPTPET  152
            +YL ID I+  A+E G   IHPGYGFLSENAEFAR  E AGI+F+GP+PE 
Sbjct  58   SYLNIDAIIDAAKETGADAIHPGYGFLSENAEFARACEEAGIIFIGPSPEA  108


>CDD:426981 pfam02785, Biotin_carb_C, Biotin carboxylase C-terminal domain. 
 Biotin carboxylase is a component of the acetyl-CoA carboxylase 
multi-component enzyme which catalyzes the first committed 
step in fatty acid synthesis in animals, plants and bacteria. 
Most of the active site residues reported in reference 
are in this C-terminal domain.
Length=108

 Score = 150 bits (381),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 69/109 (63%), Gaps = 1/109 (1%)

Query  382  QCRITTEDPANGFRPDTGKIEVYRSAGGNGVRLDGGNGFAGAIISPHYDSMLVKCTCRGS  441
            + RI  EDP N F P  GK+  YR  GG GVR+D G  +AG  +SP+YDSM+ K    G 
Sbjct  1    EARIYAEDPDNNFLPSPGKVTRYRFPGGPGVRVDSG-VYAGYTVSPYYDSMIAKLIVHGP  59

Query  442  TYEIARRKVVRALVEFRIRGVKTNIPFLTSLLSHPTFIDGTCWTTFIDD  490
            T E A  ++ RAL EFRI GVKTNIPFL ++L HP F  G   T F+++
Sbjct  60   TREEAIARLRRALAEFRIEGVKTNIPFLRAILEHPDFRAGEVDTGFLEE  108


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 119 bits (301),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 70/281 (25%), Positives = 117/281 (42%), Gaps = 30/281 (11%)

Query  581  IMDTTWRDAHQSLLATRVRTIDLLNIAKETSHAYANAYSLECWGGATFDVAMRFLYEDPW  640
            I DTT RD  Q+L        + L IA+          +L+  G    +V      ED +
Sbjct  4    ICDTTLRDGEQAL-GVAFSIDEKLAIAR----------ALDAAGVDEIEVGFPAASEDDF  52

Query  641  DRLRKLRKAVPNIPFQMLLRGANGVAYSSLPDNAIYHFCKQAKKCGVDIFRVFDALND--  698
            + +R + K +P+    +L R           ++ I    +  K  G     VF A +D  
Sbjct  53   EVVRAIAKVIPHARILVLCRAR---------EHDIKAAVEALKGAGAVRVHVFIATSDLH  103

Query  699  ------VDQLEVGIKAVQAAEGVVEATICYSGDMLNPKKKYNLEYYLALVDKIVKLNPHI  752
                   D+ EV  +AV A +      I           + + E+   +V+  ++     
Sbjct  104  RKYKLGKDREEVAKRAVAAVKAARSRGIDVEFS-PEDASRTDPEFLAEVVEAAIEAGATR  162

Query  753  LGIKDMAGVLKPQAARLLVGSIRERYPD-LPIHVHTHDSAGTGVASMVACAQAGADAVDA  811
            + I D  GVL P  A  L+ +++ R P+   I VH H+  G  VA+ +A  +AGAD VD 
Sbjct  163  INIPDTVGVLTPNEAAELISALKARVPNKAIISVHCHNDLGMAVANSLAAVEAGADRVDG  222

Query  812  ATDSMSGMTSQPSVGAILASLEGTEHDPKLNLAHVRAIDSY  852
              + +       ++  + A+LEG   D  L+L  +R+I + 
Sbjct  223  TVNGIGERAGNAALEEVAAALEGLGVDTGLDLQRLRSIANL  263


>CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme.  This family 
covers two Prosite entries, the conserved lysine residue 
binds biotin in one group and lipoic acid in the other. Note 
that the HMM does not currently recognize the Glycine cleavage 
system H proteins.
Length=73

 Score = 85.7 bits (213),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 5/72 (7%)

Query  1124  QIGAPMSGV-----VVEIRVHEGSEVKKGDPVAVLSAMKMEMVISAPHSGKVSGLLVKEG  1178
             +I +PM G      VVE  V  G +VK G P+A + AMKMEM I AP +G V  +LV EG
Sbjct  2     EIKSPMIGESVREGVVEWLVKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPEG  61

Query  1179  DSVDGQDLICKI  1190
             D+V+  D + KI
Sbjct  62    DTVEVGDPLAKI  73



Lambda      K        H        a         alpha
   0.319    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1530276848


Query= TCONS_00030326

Length=1193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460557 pfam02436, PYC_OADA, Conserved carboxylase domain. Thi...  311     3e-99
CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L...  254     2e-78
CDD:425585 pfam00289, Biotin_carb_N, Biotin carboxylase, N-termin...  183     9e-55
CDD:426981 pfam02785, Biotin_carb_C, Biotin carboxylase C-termina...  150     4e-43
CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  119     2e-30
CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. Thi...  85.7    7e-21


>CDD:460557 pfam02436, PYC_OADA, Conserved carboxylase domain.  This domain 
represents a conserved region in pyruvate carboxylase (PYC), 
oxaloacetate decarboxylase alpha chain (OADA), and transcarboxylase 
5s subunit. The domain is found adjacent to the 
HMGL-like domain (pfam00682) and often close to the biotin_lipoyl 
domain (pfam00364) of biotin requiring enzymes.
Length=201

 Score = 311 bits (800),  Expect = 3e-99, Method: Composition-based stats.
 Identities = 106/201 (53%), Positives = 136/201 (68%), Gaps = 1/201 (0%)

Query  874   VYEHEIPGGQLTNLLFQASQLGLGQQWAETKKAYESANDLLGDIVKVTPTSKVVGDLAQF  933
             VY+HEIPGGQL+NL  QA + GLG ++ E  K Y   N  LGDI KVTP+S++VGD A F
Sbjct  1     VYKHEIPGGQLSNLQQQAKEQGLGDRFDEVLKEYPRVNKDLGDIPKVTPSSQIVGDQAVF  60

Query  934   MVSNKLTPEDVVARAGELDFPGSVLEFLEGLMGQPFGGFPEPLRSKALRGRRKLDKRPGL  993
              V N LTPEDV+      D P SV+++L+G  GQP GGFPE L+ K L+G   +  RPG 
Sbjct  61    NVLNNLTPEDVLGEGRYKDIPDSVVDYLKGEYGQPPGGFPEELQKKVLKGEEPITCRPGD  120

Query  994   YLEPLDLAKIKNQIREKYG-SATEYDVASYAMYPKVFEDYKKFVQKFGDLSILPTRYFLA  1052
              L P+DL K++ ++ EK G   TE DV SYA+YPKV E + KF +K+GD+S+LPT  F  
Sbjct  121   LLPPVDLEKLRKELEEKAGRETTEEDVLSYALYPKVAEKFLKFREKYGDVSVLPTPVFFY  180

Query  1053  KPEIGEEFHVELEQGKVLILK  1073
               E GEE+ VE+E GK LI+K
Sbjct  181   GLEPGEEYEVEIEGGKYLIVK  201


>CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, 
ATP binding domain.  Carbamoyl-phosphate synthase catalyzes 
the ATP-dependent synthesis of carbamyl-phosphate from glutamine 
or ammonia and bicarbonate. This important enzyme initiates 
both the urea cycle and the biosynthesis of arginine and/or 
pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme 
in prokaryotes is a heterodimer of a small and large chain. 
The small chain promotes the hydrolysis of glutamine to 
ammonia, which is used by the large chain to synthesize carbamoyl 
phosphate. See pfam00988. The small chain has a GATase 
domain in the carboxyl terminus. See pfam00117. The ATP binding 
domain (this one) has an ATP-grasp fold.
Length=209

 Score = 254 bits (652),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 96/196 (49%), Positives = 128/196 (65%), Gaps = 1/196 (1%)

Query  158  DKVSARQLAIKCGVPVVPGTPGPVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRDQ  217
            DKV  +    + GVP VPGT GPVE  EE  A     G+P+IIKAAFGGGG GM + R++
Sbjct  1    DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNE  60

Query  218  ADLRDAFERATSEARSAFGNGTVFVERFLDRPKHIEVQLLGDNHGNVIHLFERDCSVQRR  277
             +L + F  A +EA +AFGN  V VE+ L  PKHIE Q+L D HGN I +  R+CS QRR
Sbjct  61   EELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQRR  120

Query  278  HQKVVEIAPAKDLPNDVRDRILADAVKLAKTVNYRNAGTAEFLVDQQN-RYYFIEINPRI  336
             QK +E+AP++ L ++ R  +   AVK+A+ + Y  AGT EF +D  +  YYFIE+N R+
Sbjct  121  TQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNTRL  180

Query  337  QVEHTITEEITGIDIV  352
            QVEH + E+ TG D+ 
Sbjct  181  QVEHALAEKATGYDLA  196


>CDD:425585 pfam00289, Biotin_carb_N, Biotin carboxylase, N-terminal domain. 
 This domain is structurally related to the PreATP-grasp 
domain. The family contains the N-terminus of biotin carboxylase 
enzymes, and propionyl-CoA carboxylase A chain.
Length=108

 Score = 183 bits (468),  Expect = 9e-55, Method: Composition-based stats.
 Identities = 59/111 (53%), Positives = 75/111 (68%), Gaps = 3/111 (3%)

Query  42   FQKILVANRGEIPIRIFRTAHELSLQTVAIYSYEDRLSMHRQKADEAYMIGHRGQYTPVA  101
             +K+L+ANRGEI +RI R   EL ++TVA+YS  D  S+H + ADEA  +G         
Sbjct  1    IKKVLIANRGEIAVRIIRACRELGIRTVAVYSEADANSLHVRLADEAVCLGPG---PASE  57

Query  102  AYLAIDEIVKIAQEHGVHLIHPGYGFLSENAEFARKVENAGIVFVGPTPET  152
            +YL ID I+  A+E G   IHPGYGFLSENAEFAR  E AGI+F+GP+PE 
Sbjct  58   SYLNIDAIIDAAKETGADAIHPGYGFLSENAEFARACEEAGIIFIGPSPEA  108


>CDD:426981 pfam02785, Biotin_carb_C, Biotin carboxylase C-terminal domain. 
 Biotin carboxylase is a component of the acetyl-CoA carboxylase 
multi-component enzyme which catalyzes the first committed 
step in fatty acid synthesis in animals, plants and bacteria. 
Most of the active site residues reported in reference 
are in this C-terminal domain.
Length=108

 Score = 150 bits (381),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 69/109 (63%), Gaps = 1/109 (1%)

Query  382  QCRITTEDPANGFRPDTGKIEVYRSAGGNGVRLDGGNGFAGAIISPHYDSMLVKCTCRGS  441
            + RI  EDP N F P  GK+  YR  GG GVR+D G  +AG  +SP+YDSM+ K    G 
Sbjct  1    EARIYAEDPDNNFLPSPGKVTRYRFPGGPGVRVDSG-VYAGYTVSPYYDSMIAKLIVHGP  59

Query  442  TYEIARRKVVRALVEFRIRGVKTNIPFLTSLLSHPTFIDGTCWTTFIDD  490
            T E A  ++ RAL EFRI GVKTNIPFL ++L HP F  G   T F+++
Sbjct  60   TREEAIARLRRALAEFRIEGVKTNIPFLRAILEHPDFRAGEVDTGFLEE  108


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 119 bits (301),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 70/281 (25%), Positives = 117/281 (42%), Gaps = 30/281 (11%)

Query  581  IMDTTWRDAHQSLLATRVRTIDLLNIAKETSHAYANAYSLECWGGATFDVAMRFLYEDPW  640
            I DTT RD  Q+L        + L IA+          +L+  G    +V      ED +
Sbjct  4    ICDTTLRDGEQAL-GVAFSIDEKLAIAR----------ALDAAGVDEIEVGFPAASEDDF  52

Query  641  DRLRKLRKAVPNIPFQMLLRGANGVAYSSLPDNAIYHFCKQAKKCGVDIFRVFDALND--  698
            + +R + K +P+    +L R           ++ I    +  K  G     VF A +D  
Sbjct  53   EVVRAIAKVIPHARILVLCRAR---------EHDIKAAVEALKGAGAVRVHVFIATSDLH  103

Query  699  ------VDQLEVGIKAVQAAEGVVEATICYSGDMLNPKKKYNLEYYLALVDKIVKLNPHI  752
                   D+ EV  +AV A +      I           + + E+   +V+  ++     
Sbjct  104  RKYKLGKDREEVAKRAVAAVKAARSRGIDVEFS-PEDASRTDPEFLAEVVEAAIEAGATR  162

Query  753  LGIKDMAGVLKPQAARLLVGSIRERYPD-LPIHVHTHDSAGTGVASMVACAQAGADAVDA  811
            + I D  GVL P  A  L+ +++ R P+   I VH H+  G  VA+ +A  +AGAD VD 
Sbjct  163  INIPDTVGVLTPNEAAELISALKARVPNKAIISVHCHNDLGMAVANSLAAVEAGADRVDG  222

Query  812  ATDSMSGMTSQPSVGAILASLEGTEHDPKLNLAHVRAIDSY  852
              + +       ++  + A+LEG   D  L+L  +R+I + 
Sbjct  223  TVNGIGERAGNAALEEVAAALEGLGVDTGLDLQRLRSIANL  263


>CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme.  This family 
covers two Prosite entries, the conserved lysine residue 
binds biotin in one group and lipoic acid in the other. Note 
that the HMM does not currently recognize the Glycine cleavage 
system H proteins.
Length=73

 Score = 85.7 bits (213),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 5/72 (7%)

Query  1124  QIGAPMSGV-----VVEIRVHEGSEVKKGDPVAVLSAMKMEMVISAPHSGKVSGLLVKEG  1178
             +I +PM G      VVE  V  G +VK G P+A + AMKMEM I AP +G V  +LV EG
Sbjct  2     EIKSPMIGESVREGVVEWLVKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPEG  61

Query  1179  DSVDGQDLICKI  1190
             D+V+  D + KI
Sbjct  62    DTVEVGDPLAKI  73



Lambda      K        H        a         alpha
   0.319    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1530276848


Query= TCONS_00030325

Length=1193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460557 pfam02436, PYC_OADA, Conserved carboxylase domain. Thi...  311     3e-99
CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L...  254     2e-78
CDD:425585 pfam00289, Biotin_carb_N, Biotin carboxylase, N-termin...  183     9e-55
CDD:426981 pfam02785, Biotin_carb_C, Biotin carboxylase C-termina...  150     4e-43
CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  119     2e-30
CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. Thi...  85.7    7e-21


>CDD:460557 pfam02436, PYC_OADA, Conserved carboxylase domain.  This domain 
represents a conserved region in pyruvate carboxylase (PYC), 
oxaloacetate decarboxylase alpha chain (OADA), and transcarboxylase 
5s subunit. The domain is found adjacent to the 
HMGL-like domain (pfam00682) and often close to the biotin_lipoyl 
domain (pfam00364) of biotin requiring enzymes.
Length=201

 Score = 311 bits (800),  Expect = 3e-99, Method: Composition-based stats.
 Identities = 106/201 (53%), Positives = 136/201 (68%), Gaps = 1/201 (0%)

Query  874   VYEHEIPGGQLTNLLFQASQLGLGQQWAETKKAYESANDLLGDIVKVTPTSKVVGDLAQF  933
             VY+HEIPGGQL+NL  QA + GLG ++ E  K Y   N  LGDI KVTP+S++VGD A F
Sbjct  1     VYKHEIPGGQLSNLQQQAKEQGLGDRFDEVLKEYPRVNKDLGDIPKVTPSSQIVGDQAVF  60

Query  934   MVSNKLTPEDVVARAGELDFPGSVLEFLEGLMGQPFGGFPEPLRSKALRGRRKLDKRPGL  993
              V N LTPEDV+      D P SV+++L+G  GQP GGFPE L+ K L+G   +  RPG 
Sbjct  61    NVLNNLTPEDVLGEGRYKDIPDSVVDYLKGEYGQPPGGFPEELQKKVLKGEEPITCRPGD  120

Query  994   YLEPLDLAKIKNQIREKYG-SATEYDVASYAMYPKVFEDYKKFVQKFGDLSILPTRYFLA  1052
              L P+DL K++ ++ EK G   TE DV SYA+YPKV E + KF +K+GD+S+LPT  F  
Sbjct  121   LLPPVDLEKLRKELEEKAGRETTEEDVLSYALYPKVAEKFLKFREKYGDVSVLPTPVFFY  180

Query  1053  KPEIGEEFHVELEQGKVLILK  1073
               E GEE+ VE+E GK LI+K
Sbjct  181   GLEPGEEYEVEIEGGKYLIVK  201


>CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, 
ATP binding domain.  Carbamoyl-phosphate synthase catalyzes 
the ATP-dependent synthesis of carbamyl-phosphate from glutamine 
or ammonia and bicarbonate. This important enzyme initiates 
both the urea cycle and the biosynthesis of arginine and/or 
pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme 
in prokaryotes is a heterodimer of a small and large chain. 
The small chain promotes the hydrolysis of glutamine to 
ammonia, which is used by the large chain to synthesize carbamoyl 
phosphate. See pfam00988. The small chain has a GATase 
domain in the carboxyl terminus. See pfam00117. The ATP binding 
domain (this one) has an ATP-grasp fold.
Length=209

 Score = 254 bits (652),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 96/196 (49%), Positives = 128/196 (65%), Gaps = 1/196 (1%)

Query  158  DKVSARQLAIKCGVPVVPGTPGPVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRDQ  217
            DKV  +    + GVP VPGT GPVE  EE  A     G+P+IIKAAFGGGG GM + R++
Sbjct  1    DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNE  60

Query  218  ADLRDAFERATSEARSAFGNGTVFVERFLDRPKHIEVQLLGDNHGNVIHLFERDCSVQRR  277
             +L + F  A +EA +AFGN  V VE+ L  PKHIE Q+L D HGN I +  R+CS QRR
Sbjct  61   EELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQRR  120

Query  278  HQKVVEIAPAKDLPNDVRDRILADAVKLAKTVNYRNAGTAEFLVDQQN-RYYFIEINPRI  336
             QK +E+AP++ L ++ R  +   AVK+A+ + Y  AGT EF +D  +  YYFIE+N R+
Sbjct  121  TQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNTRL  180

Query  337  QVEHTITEEITGIDIV  352
            QVEH + E+ TG D+ 
Sbjct  181  QVEHALAEKATGYDLA  196


>CDD:425585 pfam00289, Biotin_carb_N, Biotin carboxylase, N-terminal domain. 
 This domain is structurally related to the PreATP-grasp 
domain. The family contains the N-terminus of biotin carboxylase 
enzymes, and propionyl-CoA carboxylase A chain.
Length=108

 Score = 183 bits (468),  Expect = 9e-55, Method: Composition-based stats.
 Identities = 59/111 (53%), Positives = 75/111 (68%), Gaps = 3/111 (3%)

Query  42   FQKILVANRGEIPIRIFRTAHELSLQTVAIYSYEDRLSMHRQKADEAYMIGHRGQYTPVA  101
             +K+L+ANRGEI +RI R   EL ++TVA+YS  D  S+H + ADEA  +G         
Sbjct  1    IKKVLIANRGEIAVRIIRACRELGIRTVAVYSEADANSLHVRLADEAVCLGPG---PASE  57

Query  102  AYLAIDEIVKIAQEHGVHLIHPGYGFLSENAEFARKVENAGIVFVGPTPET  152
            +YL ID I+  A+E G   IHPGYGFLSENAEFAR  E AGI+F+GP+PE 
Sbjct  58   SYLNIDAIIDAAKETGADAIHPGYGFLSENAEFARACEEAGIIFIGPSPEA  108


>CDD:426981 pfam02785, Biotin_carb_C, Biotin carboxylase C-terminal domain. 
 Biotin carboxylase is a component of the acetyl-CoA carboxylase 
multi-component enzyme which catalyzes the first committed 
step in fatty acid synthesis in animals, plants and bacteria. 
Most of the active site residues reported in reference 
are in this C-terminal domain.
Length=108

 Score = 150 bits (381),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 69/109 (63%), Gaps = 1/109 (1%)

Query  382  QCRITTEDPANGFRPDTGKIEVYRSAGGNGVRLDGGNGFAGAIISPHYDSMLVKCTCRGS  441
            + RI  EDP N F P  GK+  YR  GG GVR+D G  +AG  +SP+YDSM+ K    G 
Sbjct  1    EARIYAEDPDNNFLPSPGKVTRYRFPGGPGVRVDSG-VYAGYTVSPYYDSMIAKLIVHGP  59

Query  442  TYEIARRKVVRALVEFRIRGVKTNIPFLTSLLSHPTFIDGTCWTTFIDD  490
            T E A  ++ RAL EFRI GVKTNIPFL ++L HP F  G   T F+++
Sbjct  60   TREEAIARLRRALAEFRIEGVKTNIPFLRAILEHPDFRAGEVDTGFLEE  108


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 119 bits (301),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 70/281 (25%), Positives = 117/281 (42%), Gaps = 30/281 (11%)

Query  581  IMDTTWRDAHQSLLATRVRTIDLLNIAKETSHAYANAYSLECWGGATFDVAMRFLYEDPW  640
            I DTT RD  Q+L        + L IA+          +L+  G    +V      ED +
Sbjct  4    ICDTTLRDGEQAL-GVAFSIDEKLAIAR----------ALDAAGVDEIEVGFPAASEDDF  52

Query  641  DRLRKLRKAVPNIPFQMLLRGANGVAYSSLPDNAIYHFCKQAKKCGVDIFRVFDALND--  698
            + +R + K +P+    +L R           ++ I    +  K  G     VF A +D  
Sbjct  53   EVVRAIAKVIPHARILVLCRAR---------EHDIKAAVEALKGAGAVRVHVFIATSDLH  103

Query  699  ------VDQLEVGIKAVQAAEGVVEATICYSGDMLNPKKKYNLEYYLALVDKIVKLNPHI  752
                   D+ EV  +AV A +      I           + + E+   +V+  ++     
Sbjct  104  RKYKLGKDREEVAKRAVAAVKAARSRGIDVEFS-PEDASRTDPEFLAEVVEAAIEAGATR  162

Query  753  LGIKDMAGVLKPQAARLLVGSIRERYPD-LPIHVHTHDSAGTGVASMVACAQAGADAVDA  811
            + I D  GVL P  A  L+ +++ R P+   I VH H+  G  VA+ +A  +AGAD VD 
Sbjct  163  INIPDTVGVLTPNEAAELISALKARVPNKAIISVHCHNDLGMAVANSLAAVEAGADRVDG  222

Query  812  ATDSMSGMTSQPSVGAILASLEGTEHDPKLNLAHVRAIDSY  852
              + +       ++  + A+LEG   D  L+L  +R+I + 
Sbjct  223  TVNGIGERAGNAALEEVAAALEGLGVDTGLDLQRLRSIANL  263


>CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme.  This family 
covers two Prosite entries, the conserved lysine residue 
binds biotin in one group and lipoic acid in the other. Note 
that the HMM does not currently recognize the Glycine cleavage 
system H proteins.
Length=73

 Score = 85.7 bits (213),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 5/72 (7%)

Query  1124  QIGAPMSGV-----VVEIRVHEGSEVKKGDPVAVLSAMKMEMVISAPHSGKVSGLLVKEG  1178
             +I +PM G      VVE  V  G +VK G P+A + AMKMEM I AP +G V  +LV EG
Sbjct  2     EIKSPMIGESVREGVVEWLVKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPEG  61

Query  1179  DSVDGQDLICKI  1190
             D+V+  D + KI
Sbjct  62    DTVEVGDPLAKI  73



Lambda      K        H        a         alpha
   0.319    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1530276848


Query= TCONS_00034909

Length=1193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460557 pfam02436, PYC_OADA, Conserved carboxylase domain. Thi...  311     3e-99
CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L...  254     2e-78
CDD:425585 pfam00289, Biotin_carb_N, Biotin carboxylase, N-termin...  183     9e-55
CDD:426981 pfam02785, Biotin_carb_C, Biotin carboxylase C-termina...  150     4e-43
CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  119     2e-30
CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. Thi...  85.7    7e-21


>CDD:460557 pfam02436, PYC_OADA, Conserved carboxylase domain.  This domain 
represents a conserved region in pyruvate carboxylase (PYC), 
oxaloacetate decarboxylase alpha chain (OADA), and transcarboxylase 
5s subunit. The domain is found adjacent to the 
HMGL-like domain (pfam00682) and often close to the biotin_lipoyl 
domain (pfam00364) of biotin requiring enzymes.
Length=201

 Score = 311 bits (800),  Expect = 3e-99, Method: Composition-based stats.
 Identities = 106/201 (53%), Positives = 136/201 (68%), Gaps = 1/201 (0%)

Query  874   VYEHEIPGGQLTNLLFQASQLGLGQQWAETKKAYESANDLLGDIVKVTPTSKVVGDLAQF  933
             VY+HEIPGGQL+NL  QA + GLG ++ E  K Y   N  LGDI KVTP+S++VGD A F
Sbjct  1     VYKHEIPGGQLSNLQQQAKEQGLGDRFDEVLKEYPRVNKDLGDIPKVTPSSQIVGDQAVF  60

Query  934   MVSNKLTPEDVVARAGELDFPGSVLEFLEGLMGQPFGGFPEPLRSKALRGRRKLDKRPGL  993
              V N LTPEDV+      D P SV+++L+G  GQP GGFPE L+ K L+G   +  RPG 
Sbjct  61    NVLNNLTPEDVLGEGRYKDIPDSVVDYLKGEYGQPPGGFPEELQKKVLKGEEPITCRPGD  120

Query  994   YLEPLDLAKIKNQIREKYG-SATEYDVASYAMYPKVFEDYKKFVQKFGDLSILPTRYFLA  1052
              L P+DL K++ ++ EK G   TE DV SYA+YPKV E + KF +K+GD+S+LPT  F  
Sbjct  121   LLPPVDLEKLRKELEEKAGRETTEEDVLSYALYPKVAEKFLKFREKYGDVSVLPTPVFFY  180

Query  1053  KPEIGEEFHVELEQGKVLILK  1073
               E GEE+ VE+E GK LI+K
Sbjct  181   GLEPGEEYEVEIEGGKYLIVK  201


>CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, 
ATP binding domain.  Carbamoyl-phosphate synthase catalyzes 
the ATP-dependent synthesis of carbamyl-phosphate from glutamine 
or ammonia and bicarbonate. This important enzyme initiates 
both the urea cycle and the biosynthesis of arginine and/or 
pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme 
in prokaryotes is a heterodimer of a small and large chain. 
The small chain promotes the hydrolysis of glutamine to 
ammonia, which is used by the large chain to synthesize carbamoyl 
phosphate. See pfam00988. The small chain has a GATase 
domain in the carboxyl terminus. See pfam00117. The ATP binding 
domain (this one) has an ATP-grasp fold.
Length=209

 Score = 254 bits (652),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 96/196 (49%), Positives = 128/196 (65%), Gaps = 1/196 (1%)

Query  158  DKVSARQLAIKCGVPVVPGTPGPVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRDQ  217
            DKV  +    + GVP VPGT GPVE  EE  A     G+P+IIKAAFGGGG GM + R++
Sbjct  1    DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNE  60

Query  218  ADLRDAFERATSEARSAFGNGTVFVERFLDRPKHIEVQLLGDNHGNVIHLFERDCSVQRR  277
             +L + F  A +EA +AFGN  V VE+ L  PKHIE Q+L D HGN I +  R+CS QRR
Sbjct  61   EELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQRR  120

Query  278  HQKVVEIAPAKDLPNDVRDRILADAVKLAKTVNYRNAGTAEFLVDQQN-RYYFIEINPRI  336
             QK +E+AP++ L ++ R  +   AVK+A+ + Y  AGT EF +D  +  YYFIE+N R+
Sbjct  121  TQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNTRL  180

Query  337  QVEHTITEEITGIDIV  352
            QVEH + E+ TG D+ 
Sbjct  181  QVEHALAEKATGYDLA  196


>CDD:425585 pfam00289, Biotin_carb_N, Biotin carboxylase, N-terminal domain. 
 This domain is structurally related to the PreATP-grasp 
domain. The family contains the N-terminus of biotin carboxylase 
enzymes, and propionyl-CoA carboxylase A chain.
Length=108

 Score = 183 bits (468),  Expect = 9e-55, Method: Composition-based stats.
 Identities = 59/111 (53%), Positives = 75/111 (68%), Gaps = 3/111 (3%)

Query  42   FQKILVANRGEIPIRIFRTAHELSLQTVAIYSYEDRLSMHRQKADEAYMIGHRGQYTPVA  101
             +K+L+ANRGEI +RI R   EL ++TVA+YS  D  S+H + ADEA  +G         
Sbjct  1    IKKVLIANRGEIAVRIIRACRELGIRTVAVYSEADANSLHVRLADEAVCLGPG---PASE  57

Query  102  AYLAIDEIVKIAQEHGVHLIHPGYGFLSENAEFARKVENAGIVFVGPTPET  152
            +YL ID I+  A+E G   IHPGYGFLSENAEFAR  E AGI+F+GP+PE 
Sbjct  58   SYLNIDAIIDAAKETGADAIHPGYGFLSENAEFARACEEAGIIFIGPSPEA  108


>CDD:426981 pfam02785, Biotin_carb_C, Biotin carboxylase C-terminal domain. 
 Biotin carboxylase is a component of the acetyl-CoA carboxylase 
multi-component enzyme which catalyzes the first committed 
step in fatty acid synthesis in animals, plants and bacteria. 
Most of the active site residues reported in reference 
are in this C-terminal domain.
Length=108

 Score = 150 bits (381),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 69/109 (63%), Gaps = 1/109 (1%)

Query  382  QCRITTEDPANGFRPDTGKIEVYRSAGGNGVRLDGGNGFAGAIISPHYDSMLVKCTCRGS  441
            + RI  EDP N F P  GK+  YR  GG GVR+D G  +AG  +SP+YDSM+ K    G 
Sbjct  1    EARIYAEDPDNNFLPSPGKVTRYRFPGGPGVRVDSG-VYAGYTVSPYYDSMIAKLIVHGP  59

Query  442  TYEIARRKVVRALVEFRIRGVKTNIPFLTSLLSHPTFIDGTCWTTFIDD  490
            T E A  ++ RAL EFRI GVKTNIPFL ++L HP F  G   T F+++
Sbjct  60   TREEAIARLRRALAEFRIEGVKTNIPFLRAILEHPDFRAGEVDTGFLEE  108


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 119 bits (301),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 70/281 (25%), Positives = 117/281 (42%), Gaps = 30/281 (11%)

Query  581  IMDTTWRDAHQSLLATRVRTIDLLNIAKETSHAYANAYSLECWGGATFDVAMRFLYEDPW  640
            I DTT RD  Q+L        + L IA+          +L+  G    +V      ED +
Sbjct  4    ICDTTLRDGEQAL-GVAFSIDEKLAIAR----------ALDAAGVDEIEVGFPAASEDDF  52

Query  641  DRLRKLRKAVPNIPFQMLLRGANGVAYSSLPDNAIYHFCKQAKKCGVDIFRVFDALND--  698
            + +R + K +P+    +L R           ++ I    +  K  G     VF A +D  
Sbjct  53   EVVRAIAKVIPHARILVLCRAR---------EHDIKAAVEALKGAGAVRVHVFIATSDLH  103

Query  699  ------VDQLEVGIKAVQAAEGVVEATICYSGDMLNPKKKYNLEYYLALVDKIVKLNPHI  752
                   D+ EV  +AV A +      I           + + E+   +V+  ++     
Sbjct  104  RKYKLGKDREEVAKRAVAAVKAARSRGIDVEFS-PEDASRTDPEFLAEVVEAAIEAGATR  162

Query  753  LGIKDMAGVLKPQAARLLVGSIRERYPD-LPIHVHTHDSAGTGVASMVACAQAGADAVDA  811
            + I D  GVL P  A  L+ +++ R P+   I VH H+  G  VA+ +A  +AGAD VD 
Sbjct  163  INIPDTVGVLTPNEAAELISALKARVPNKAIISVHCHNDLGMAVANSLAAVEAGADRVDG  222

Query  812  ATDSMSGMTSQPSVGAILASLEGTEHDPKLNLAHVRAIDSY  852
              + +       ++  + A+LEG   D  L+L  +R+I + 
Sbjct  223  TVNGIGERAGNAALEEVAAALEGLGVDTGLDLQRLRSIANL  263


>CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme.  This family 
covers two Prosite entries, the conserved lysine residue 
binds biotin in one group and lipoic acid in the other. Note 
that the HMM does not currently recognize the Glycine cleavage 
system H proteins.
Length=73

 Score = 85.7 bits (213),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 5/72 (7%)

Query  1124  QIGAPMSGV-----VVEIRVHEGSEVKKGDPVAVLSAMKMEMVISAPHSGKVSGLLVKEG  1178
             +I +PM G      VVE  V  G +VK G P+A + AMKMEM I AP +G V  +LV EG
Sbjct  2     EIKSPMIGESVREGVVEWLVKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPEG  61

Query  1179  DSVDGQDLICKI  1190
             D+V+  D + KI
Sbjct  62    DTVEVGDPLAKI  73



Lambda      K        H        a         alpha
   0.319    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1530276848


Query= TCONS_00030328

Length=1193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460557 pfam02436, PYC_OADA, Conserved carboxylase domain. Thi...  311     3e-99
CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L...  254     2e-78
CDD:425585 pfam00289, Biotin_carb_N, Biotin carboxylase, N-termin...  183     9e-55
CDD:426981 pfam02785, Biotin_carb_C, Biotin carboxylase C-termina...  150     4e-43
CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  119     2e-30
CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. Thi...  85.7    7e-21


>CDD:460557 pfam02436, PYC_OADA, Conserved carboxylase domain.  This domain 
represents a conserved region in pyruvate carboxylase (PYC), 
oxaloacetate decarboxylase alpha chain (OADA), and transcarboxylase 
5s subunit. The domain is found adjacent to the 
HMGL-like domain (pfam00682) and often close to the biotin_lipoyl 
domain (pfam00364) of biotin requiring enzymes.
Length=201

 Score = 311 bits (800),  Expect = 3e-99, Method: Composition-based stats.
 Identities = 106/201 (53%), Positives = 136/201 (68%), Gaps = 1/201 (0%)

Query  874   VYEHEIPGGQLTNLLFQASQLGLGQQWAETKKAYESANDLLGDIVKVTPTSKVVGDLAQF  933
             VY+HEIPGGQL+NL  QA + GLG ++ E  K Y   N  LGDI KVTP+S++VGD A F
Sbjct  1     VYKHEIPGGQLSNLQQQAKEQGLGDRFDEVLKEYPRVNKDLGDIPKVTPSSQIVGDQAVF  60

Query  934   MVSNKLTPEDVVARAGELDFPGSVLEFLEGLMGQPFGGFPEPLRSKALRGRRKLDKRPGL  993
              V N LTPEDV+      D P SV+++L+G  GQP GGFPE L+ K L+G   +  RPG 
Sbjct  61    NVLNNLTPEDVLGEGRYKDIPDSVVDYLKGEYGQPPGGFPEELQKKVLKGEEPITCRPGD  120

Query  994   YLEPLDLAKIKNQIREKYG-SATEYDVASYAMYPKVFEDYKKFVQKFGDLSILPTRYFLA  1052
              L P+DL K++ ++ EK G   TE DV SYA+YPKV E + KF +K+GD+S+LPT  F  
Sbjct  121   LLPPVDLEKLRKELEEKAGRETTEEDVLSYALYPKVAEKFLKFREKYGDVSVLPTPVFFY  180

Query  1053  KPEIGEEFHVELEQGKVLILK  1073
               E GEE+ VE+E GK LI+K
Sbjct  181   GLEPGEEYEVEIEGGKYLIVK  201


>CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, 
ATP binding domain.  Carbamoyl-phosphate synthase catalyzes 
the ATP-dependent synthesis of carbamyl-phosphate from glutamine 
or ammonia and bicarbonate. This important enzyme initiates 
both the urea cycle and the biosynthesis of arginine and/or 
pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme 
in prokaryotes is a heterodimer of a small and large chain. 
The small chain promotes the hydrolysis of glutamine to 
ammonia, which is used by the large chain to synthesize carbamoyl 
phosphate. See pfam00988. The small chain has a GATase 
domain in the carboxyl terminus. See pfam00117. The ATP binding 
domain (this one) has an ATP-grasp fold.
Length=209

 Score = 254 bits (652),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 96/196 (49%), Positives = 128/196 (65%), Gaps = 1/196 (1%)

Query  158  DKVSARQLAIKCGVPVVPGTPGPVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRDQ  217
            DKV  +    + GVP VPGT GPVE  EE  A     G+P+IIKAAFGGGG GM + R++
Sbjct  1    DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNE  60

Query  218  ADLRDAFERATSEARSAFGNGTVFVERFLDRPKHIEVQLLGDNHGNVIHLFERDCSVQRR  277
             +L + F  A +EA +AFGN  V VE+ L  PKHIE Q+L D HGN I +  R+CS QRR
Sbjct  61   EELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQRR  120

Query  278  HQKVVEIAPAKDLPNDVRDRILADAVKLAKTVNYRNAGTAEFLVDQQN-RYYFIEINPRI  336
             QK +E+AP++ L ++ R  +   AVK+A+ + Y  AGT EF +D  +  YYFIE+N R+
Sbjct  121  TQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNTRL  180

Query  337  QVEHTITEEITGIDIV  352
            QVEH + E+ TG D+ 
Sbjct  181  QVEHALAEKATGYDLA  196


>CDD:425585 pfam00289, Biotin_carb_N, Biotin carboxylase, N-terminal domain. 
 This domain is structurally related to the PreATP-grasp 
domain. The family contains the N-terminus of biotin carboxylase 
enzymes, and propionyl-CoA carboxylase A chain.
Length=108

 Score = 183 bits (468),  Expect = 9e-55, Method: Composition-based stats.
 Identities = 59/111 (53%), Positives = 75/111 (68%), Gaps = 3/111 (3%)

Query  42   FQKILVANRGEIPIRIFRTAHELSLQTVAIYSYEDRLSMHRQKADEAYMIGHRGQYTPVA  101
             +K+L+ANRGEI +RI R   EL ++TVA+YS  D  S+H + ADEA  +G         
Sbjct  1    IKKVLIANRGEIAVRIIRACRELGIRTVAVYSEADANSLHVRLADEAVCLGPG---PASE  57

Query  102  AYLAIDEIVKIAQEHGVHLIHPGYGFLSENAEFARKVENAGIVFVGPTPET  152
            +YL ID I+  A+E G   IHPGYGFLSENAEFAR  E AGI+F+GP+PE 
Sbjct  58   SYLNIDAIIDAAKETGADAIHPGYGFLSENAEFARACEEAGIIFIGPSPEA  108


>CDD:426981 pfam02785, Biotin_carb_C, Biotin carboxylase C-terminal domain. 
 Biotin carboxylase is a component of the acetyl-CoA carboxylase 
multi-component enzyme which catalyzes the first committed 
step in fatty acid synthesis in animals, plants and bacteria. 
Most of the active site residues reported in reference 
are in this C-terminal domain.
Length=108

 Score = 150 bits (381),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 69/109 (63%), Gaps = 1/109 (1%)

Query  382  QCRITTEDPANGFRPDTGKIEVYRSAGGNGVRLDGGNGFAGAIISPHYDSMLVKCTCRGS  441
            + RI  EDP N F P  GK+  YR  GG GVR+D G  +AG  +SP+YDSM+ K    G 
Sbjct  1    EARIYAEDPDNNFLPSPGKVTRYRFPGGPGVRVDSG-VYAGYTVSPYYDSMIAKLIVHGP  59

Query  442  TYEIARRKVVRALVEFRIRGVKTNIPFLTSLLSHPTFIDGTCWTTFIDD  490
            T E A  ++ RAL EFRI GVKTNIPFL ++L HP F  G   T F+++
Sbjct  60   TREEAIARLRRALAEFRIEGVKTNIPFLRAILEHPDFRAGEVDTGFLEE  108


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 119 bits (301),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 70/281 (25%), Positives = 117/281 (42%), Gaps = 30/281 (11%)

Query  581  IMDTTWRDAHQSLLATRVRTIDLLNIAKETSHAYANAYSLECWGGATFDVAMRFLYEDPW  640
            I DTT RD  Q+L        + L IA+          +L+  G    +V      ED +
Sbjct  4    ICDTTLRDGEQAL-GVAFSIDEKLAIAR----------ALDAAGVDEIEVGFPAASEDDF  52

Query  641  DRLRKLRKAVPNIPFQMLLRGANGVAYSSLPDNAIYHFCKQAKKCGVDIFRVFDALND--  698
            + +R + K +P+    +L R           ++ I    +  K  G     VF A +D  
Sbjct  53   EVVRAIAKVIPHARILVLCRAR---------EHDIKAAVEALKGAGAVRVHVFIATSDLH  103

Query  699  ------VDQLEVGIKAVQAAEGVVEATICYSGDMLNPKKKYNLEYYLALVDKIVKLNPHI  752
                   D+ EV  +AV A +      I           + + E+   +V+  ++     
Sbjct  104  RKYKLGKDREEVAKRAVAAVKAARSRGIDVEFS-PEDASRTDPEFLAEVVEAAIEAGATR  162

Query  753  LGIKDMAGVLKPQAARLLVGSIRERYPD-LPIHVHTHDSAGTGVASMVACAQAGADAVDA  811
            + I D  GVL P  A  L+ +++ R P+   I VH H+  G  VA+ +A  +AGAD VD 
Sbjct  163  INIPDTVGVLTPNEAAELISALKARVPNKAIISVHCHNDLGMAVANSLAAVEAGADRVDG  222

Query  812  ATDSMSGMTSQPSVGAILASLEGTEHDPKLNLAHVRAIDSY  852
              + +       ++  + A+LEG   D  L+L  +R+I + 
Sbjct  223  TVNGIGERAGNAALEEVAAALEGLGVDTGLDLQRLRSIANL  263


>CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme.  This family 
covers two Prosite entries, the conserved lysine residue 
binds biotin in one group and lipoic acid in the other. Note 
that the HMM does not currently recognize the Glycine cleavage 
system H proteins.
Length=73

 Score = 85.7 bits (213),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 5/72 (7%)

Query  1124  QIGAPMSGV-----VVEIRVHEGSEVKKGDPVAVLSAMKMEMVISAPHSGKVSGLLVKEG  1178
             +I +PM G      VVE  V  G +VK G P+A + AMKMEM I AP +G V  +LV EG
Sbjct  2     EIKSPMIGESVREGVVEWLVKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPEG  61

Query  1179  DSVDGQDLICKI  1190
             D+V+  D + KI
Sbjct  62    DTVEVGDPLAKI  73



Lambda      K        H        a         alpha
   0.319    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1530276848


Query= TCONS_00034910

Length=1174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460557 pfam02436, PYC_OADA, Conserved carboxylase domain. Thi...  312     1e-99
CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L...  255     1e-78
CDD:425585 pfam00289, Biotin_carb_N, Biotin carboxylase, N-termin...  184     7e-55
CDD:426981 pfam02785, Biotin_carb_C, Biotin carboxylase C-termina...  150     5e-43
CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  119     2e-30


>CDD:460557 pfam02436, PYC_OADA, Conserved carboxylase domain.  This domain 
represents a conserved region in pyruvate carboxylase (PYC), 
oxaloacetate decarboxylase alpha chain (OADA), and transcarboxylase 
5s subunit. The domain is found adjacent to the 
HMGL-like domain (pfam00682) and often close to the biotin_lipoyl 
domain (pfam00364) of biotin requiring enzymes.
Length=201

 Score = 312 bits (801),  Expect = 1e-99, Method: Composition-based stats.
 Identities = 106/201 (53%), Positives = 136/201 (68%), Gaps = 1/201 (0%)

Query  874   VYEHEIPGGQLTNLLFQASQLGLGQQWAETKKAYESANDLLGDIVKVTPTSKVVGDLAQF  933
             VY+HEIPGGQL+NL  QA + GLG ++ E  K Y   N  LGDI KVTP+S++VGD A F
Sbjct  1     VYKHEIPGGQLSNLQQQAKEQGLGDRFDEVLKEYPRVNKDLGDIPKVTPSSQIVGDQAVF  60

Query  934   MVSNKLTPEDVVARAGELDFPGSVLEFLEGLMGQPFGGFPEPLRSKALRGRRKLDKRPGL  993
              V N LTPEDV+      D P SV+++L+G  GQP GGFPE L+ K L+G   +  RPG 
Sbjct  61    NVLNNLTPEDVLGEGRYKDIPDSVVDYLKGEYGQPPGGFPEELQKKVLKGEEPITCRPGD  120

Query  994   YLEPLDLAKIKNQIREKYG-SATEYDVASYAMYPKVFEDYKKFVQKFGDLSILPTRYFLA  1052
              L P+DL K++ ++ EK G   TE DV SYA+YPKV E + KF +K+GD+S+LPT  F  
Sbjct  121   LLPPVDLEKLRKELEEKAGRETTEEDVLSYALYPKVAEKFLKFREKYGDVSVLPTPVFFY  180

Query  1053  KPEIGEEFHVELEQGKVLILK  1073
               E GEE+ VE+E GK LI+K
Sbjct  181   GLEPGEEYEVEIEGGKYLIVK  201


>CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, 
ATP binding domain.  Carbamoyl-phosphate synthase catalyzes 
the ATP-dependent synthesis of carbamyl-phosphate from glutamine 
or ammonia and bicarbonate. This important enzyme initiates 
both the urea cycle and the biosynthesis of arginine and/or 
pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme 
in prokaryotes is a heterodimer of a small and large chain. 
The small chain promotes the hydrolysis of glutamine to 
ammonia, which is used by the large chain to synthesize carbamoyl 
phosphate. See pfam00988. The small chain has a GATase 
domain in the carboxyl terminus. See pfam00117. The ATP binding 
domain (this one) has an ATP-grasp fold.
Length=209

 Score = 255 bits (653),  Expect = 1e-78, Method: Composition-based stats.
 Identities = 96/196 (49%), Positives = 128/196 (65%), Gaps = 1/196 (1%)

Query  158  DKVSARQLAIKCGVPVVPGTPGPVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRDQ  217
            DKV  +    + GVP VPGT GPVE  EE  A     G+P+IIKAAFGGGG GM + R++
Sbjct  1    DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNE  60

Query  218  ADLRDAFERATSEARSAFGNGTVFVERFLDRPKHIEVQLLGDNHGNVIHLFERDCSVQRR  277
             +L + F  A +EA +AFGN  V VE+ L  PKHIE Q+L D HGN I +  R+CS QRR
Sbjct  61   EELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQRR  120

Query  278  HQKVVEIAPAKDLPNDVRDRILADAVKLAKTVNYRNAGTAEFLVDQQN-RYYFIEINPRI  336
             QK +E+AP++ L ++ R  +   AVK+A+ + Y  AGT EF +D  +  YYFIE+N R+
Sbjct  121  TQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNTRL  180

Query  337  QVEHTITEEITGIDIV  352
            QVEH + E+ TG D+ 
Sbjct  181  QVEHALAEKATGYDLA  196


>CDD:425585 pfam00289, Biotin_carb_N, Biotin carboxylase, N-terminal domain. 
 This domain is structurally related to the PreATP-grasp 
domain. The family contains the N-terminus of biotin carboxylase 
enzymes, and propionyl-CoA carboxylase A chain.
Length=108

 Score = 184 bits (469),  Expect = 7e-55, Method: Composition-based stats.
 Identities = 59/111 (53%), Positives = 75/111 (68%), Gaps = 3/111 (3%)

Query  42   FQKILVANRGEIPIRIFRTAHELSLQTVAIYSYEDRLSMHRQKADEAYMIGHRGQYTPVA  101
             +K+L+ANRGEI +RI R   EL ++TVA+YS  D  S+H + ADEA  +G         
Sbjct  1    IKKVLIANRGEIAVRIIRACRELGIRTVAVYSEADANSLHVRLADEAVCLGPG---PASE  57

Query  102  AYLAIDEIVKIAQEHGVHLIHPGYGFLSENAEFARKVENAGIVFVGPTPET  152
            +YL ID I+  A+E G   IHPGYGFLSENAEFAR  E AGI+F+GP+PE 
Sbjct  58   SYLNIDAIIDAAKETGADAIHPGYGFLSENAEFARACEEAGIIFIGPSPEA  108


>CDD:426981 pfam02785, Biotin_carb_C, Biotin carboxylase C-terminal domain. 
 Biotin carboxylase is a component of the acetyl-CoA carboxylase 
multi-component enzyme which catalyzes the first committed 
step in fatty acid synthesis in animals, plants and bacteria. 
Most of the active site residues reported in reference 
are in this C-terminal domain.
Length=108

 Score = 150 bits (381),  Expect = 5e-43, Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 69/109 (63%), Gaps = 1/109 (1%)

Query  382  QCRITTEDPANGFRPDTGKIEVYRSAGGNGVRLDGGNGFAGAIISPHYDSMLVKCTCRGS  441
            + RI  EDP N F P  GK+  YR  GG GVR+D G  +AG  +SP+YDSM+ K    G 
Sbjct  1    EARIYAEDPDNNFLPSPGKVTRYRFPGGPGVRVDSG-VYAGYTVSPYYDSMIAKLIVHGP  59

Query  442  TYEIARRKVVRALVEFRIRGVKTNIPFLTSLLSHPTFIDGTCWTTFIDD  490
            T E A  ++ RAL EFRI GVKTNIPFL ++L HP F  G   T F+++
Sbjct  60   TREEAIARLRRALAEFRIEGVKTNIPFLRAILEHPDFRAGEVDTGFLEE  108


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 119 bits (301),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 70/281 (25%), Positives = 117/281 (42%), Gaps = 30/281 (11%)

Query  581  IMDTTWRDAHQSLLATRVRTIDLLNIAKETSHAYANAYSLECWGGATFDVAMRFLYEDPW  640
            I DTT RD  Q+L        + L IA+          +L+  G    +V      ED +
Sbjct  4    ICDTTLRDGEQAL-GVAFSIDEKLAIAR----------ALDAAGVDEIEVGFPAASEDDF  52

Query  641  DRLRKLRKAVPNIPFQMLLRGANGVAYSSLPDNAIYHFCKQAKKCGVDIFRVFDALND--  698
            + +R + K +P+    +L R           ++ I    +  K  G     VF A +D  
Sbjct  53   EVVRAIAKVIPHARILVLCRAR---------EHDIKAAVEALKGAGAVRVHVFIATSDLH  103

Query  699  ------VDQLEVGIKAVQAAEGVVEATICYSGDMLNPKKKYNLEYYLALVDKIVKLNPHI  752
                   D+ EV  +AV A +      I           + + E+   +V+  ++     
Sbjct  104  RKYKLGKDREEVAKRAVAAVKAARSRGIDVEFS-PEDASRTDPEFLAEVVEAAIEAGATR  162

Query  753  LGIKDMAGVLKPQAARLLVGSIRERYPD-LPIHVHTHDSAGTGVASMVACAQAGADAVDA  811
            + I D  GVL P  A  L+ +++ R P+   I VH H+  G  VA+ +A  +AGAD VD 
Sbjct  163  INIPDTVGVLTPNEAAELISALKARVPNKAIISVHCHNDLGMAVANSLAAVEAGADRVDG  222

Query  812  ATDSMSGMTSQPSVGAILASLEGTEHDPKLNLAHVRAIDSY  852
              + +       ++  + A+LEG   D  L+L  +R+I + 
Sbjct  223  TVNGIGERAGNAALEEVAAALEGLGVDTGLDLQRLRSIANL  263



Lambda      K        H        a         alpha
   0.320    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0815    0.140     1.90     42.6     43.6 

Effective search space used: 1503748326


Query= TCONS_00030329

Length=1193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460557 pfam02436, PYC_OADA, Conserved carboxylase domain. Thi...  311     3e-99
CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L...  254     2e-78
CDD:425585 pfam00289, Biotin_carb_N, Biotin carboxylase, N-termin...  183     9e-55
CDD:426981 pfam02785, Biotin_carb_C, Biotin carboxylase C-termina...  150     4e-43
CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  119     2e-30
CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. Thi...  85.7    7e-21


>CDD:460557 pfam02436, PYC_OADA, Conserved carboxylase domain.  This domain 
represents a conserved region in pyruvate carboxylase (PYC), 
oxaloacetate decarboxylase alpha chain (OADA), and transcarboxylase 
5s subunit. The domain is found adjacent to the 
HMGL-like domain (pfam00682) and often close to the biotin_lipoyl 
domain (pfam00364) of biotin requiring enzymes.
Length=201

 Score = 311 bits (800),  Expect = 3e-99, Method: Composition-based stats.
 Identities = 106/201 (53%), Positives = 136/201 (68%), Gaps = 1/201 (0%)

Query  874   VYEHEIPGGQLTNLLFQASQLGLGQQWAETKKAYESANDLLGDIVKVTPTSKVVGDLAQF  933
             VY+HEIPGGQL+NL  QA + GLG ++ E  K Y   N  LGDI KVTP+S++VGD A F
Sbjct  1     VYKHEIPGGQLSNLQQQAKEQGLGDRFDEVLKEYPRVNKDLGDIPKVTPSSQIVGDQAVF  60

Query  934   MVSNKLTPEDVVARAGELDFPGSVLEFLEGLMGQPFGGFPEPLRSKALRGRRKLDKRPGL  993
              V N LTPEDV+      D P SV+++L+G  GQP GGFPE L+ K L+G   +  RPG 
Sbjct  61    NVLNNLTPEDVLGEGRYKDIPDSVVDYLKGEYGQPPGGFPEELQKKVLKGEEPITCRPGD  120

Query  994   YLEPLDLAKIKNQIREKYG-SATEYDVASYAMYPKVFEDYKKFVQKFGDLSILPTRYFLA  1052
              L P+DL K++ ++ EK G   TE DV SYA+YPKV E + KF +K+GD+S+LPT  F  
Sbjct  121   LLPPVDLEKLRKELEEKAGRETTEEDVLSYALYPKVAEKFLKFREKYGDVSVLPTPVFFY  180

Query  1053  KPEIGEEFHVELEQGKVLILK  1073
               E GEE+ VE+E GK LI+K
Sbjct  181   GLEPGEEYEVEIEGGKYLIVK  201


>CDD:397079 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, 
ATP binding domain.  Carbamoyl-phosphate synthase catalyzes 
the ATP-dependent synthesis of carbamyl-phosphate from glutamine 
or ammonia and bicarbonate. This important enzyme initiates 
both the urea cycle and the biosynthesis of arginine and/or 
pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme 
in prokaryotes is a heterodimer of a small and large chain. 
The small chain promotes the hydrolysis of glutamine to 
ammonia, which is used by the large chain to synthesize carbamoyl 
phosphate. See pfam00988. The small chain has a GATase 
domain in the carboxyl terminus. See pfam00117. The ATP binding 
domain (this one) has an ATP-grasp fold.
Length=209

 Score = 254 bits (652),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 96/196 (49%), Positives = 128/196 (65%), Gaps = 1/196 (1%)

Query  158  DKVSARQLAIKCGVPVVPGTPGPVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRDQ  217
            DKV  +    + GVP VPGT GPVE  EE  A     G+P+IIKAAFGGGG GM + R++
Sbjct  1    DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNE  60

Query  218  ADLRDAFERATSEARSAFGNGTVFVERFLDRPKHIEVQLLGDNHGNVIHLFERDCSVQRR  277
             +L + F  A +EA +AFGN  V VE+ L  PKHIE Q+L D HGN I +  R+CS QRR
Sbjct  61   EELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQRR  120

Query  278  HQKVVEIAPAKDLPNDVRDRILADAVKLAKTVNYRNAGTAEFLVDQQN-RYYFIEINPRI  336
             QK +E+AP++ L ++ R  +   AVK+A+ + Y  AGT EF +D  +  YYFIE+N R+
Sbjct  121  TQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNTRL  180

Query  337  QVEHTITEEITGIDIV  352
            QVEH + E+ TG D+ 
Sbjct  181  QVEHALAEKATGYDLA  196


>CDD:425585 pfam00289, Biotin_carb_N, Biotin carboxylase, N-terminal domain. 
 This domain is structurally related to the PreATP-grasp 
domain. The family contains the N-terminus of biotin carboxylase 
enzymes, and propionyl-CoA carboxylase A chain.
Length=108

 Score = 183 bits (468),  Expect = 9e-55, Method: Composition-based stats.
 Identities = 59/111 (53%), Positives = 75/111 (68%), Gaps = 3/111 (3%)

Query  42   FQKILVANRGEIPIRIFRTAHELSLQTVAIYSYEDRLSMHRQKADEAYMIGHRGQYTPVA  101
             +K+L+ANRGEI +RI R   EL ++TVA+YS  D  S+H + ADEA  +G         
Sbjct  1    IKKVLIANRGEIAVRIIRACRELGIRTVAVYSEADANSLHVRLADEAVCLGPG---PASE  57

Query  102  AYLAIDEIVKIAQEHGVHLIHPGYGFLSENAEFARKVENAGIVFVGPTPET  152
            +YL ID I+  A+E G   IHPGYGFLSENAEFAR  E AGI+F+GP+PE 
Sbjct  58   SYLNIDAIIDAAKETGADAIHPGYGFLSENAEFARACEEAGIIFIGPSPEA  108


>CDD:426981 pfam02785, Biotin_carb_C, Biotin carboxylase C-terminal domain. 
 Biotin carboxylase is a component of the acetyl-CoA carboxylase 
multi-component enzyme which catalyzes the first committed 
step in fatty acid synthesis in animals, plants and bacteria. 
Most of the active site residues reported in reference 
are in this C-terminal domain.
Length=108

 Score = 150 bits (381),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 69/109 (63%), Gaps = 1/109 (1%)

Query  382  QCRITTEDPANGFRPDTGKIEVYRSAGGNGVRLDGGNGFAGAIISPHYDSMLVKCTCRGS  441
            + RI  EDP N F P  GK+  YR  GG GVR+D G  +AG  +SP+YDSM+ K    G 
Sbjct  1    EARIYAEDPDNNFLPSPGKVTRYRFPGGPGVRVDSG-VYAGYTVSPYYDSMIAKLIVHGP  59

Query  442  TYEIARRKVVRALVEFRIRGVKTNIPFLTSLLSHPTFIDGTCWTTFIDD  490
            T E A  ++ RAL EFRI GVKTNIPFL ++L HP F  G   T F+++
Sbjct  60   TREEAIARLRRALAEFRIEGVKTNIPFLRAILEHPDFRAGEVDTGFLEE  108


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 119 bits (301),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 70/281 (25%), Positives = 117/281 (42%), Gaps = 30/281 (11%)

Query  581  IMDTTWRDAHQSLLATRVRTIDLLNIAKETSHAYANAYSLECWGGATFDVAMRFLYEDPW  640
            I DTT RD  Q+L        + L IA+          +L+  G    +V      ED +
Sbjct  4    ICDTTLRDGEQAL-GVAFSIDEKLAIAR----------ALDAAGVDEIEVGFPAASEDDF  52

Query  641  DRLRKLRKAVPNIPFQMLLRGANGVAYSSLPDNAIYHFCKQAKKCGVDIFRVFDALND--  698
            + +R + K +P+    +L R           ++ I    +  K  G     VF A +D  
Sbjct  53   EVVRAIAKVIPHARILVLCRAR---------EHDIKAAVEALKGAGAVRVHVFIATSDLH  103

Query  699  ------VDQLEVGIKAVQAAEGVVEATICYSGDMLNPKKKYNLEYYLALVDKIVKLNPHI  752
                   D+ EV  +AV A +      I           + + E+   +V+  ++     
Sbjct  104  RKYKLGKDREEVAKRAVAAVKAARSRGIDVEFS-PEDASRTDPEFLAEVVEAAIEAGATR  162

Query  753  LGIKDMAGVLKPQAARLLVGSIRERYPD-LPIHVHTHDSAGTGVASMVACAQAGADAVDA  811
            + I D  GVL P  A  L+ +++ R P+   I VH H+  G  VA+ +A  +AGAD VD 
Sbjct  163  INIPDTVGVLTPNEAAELISALKARVPNKAIISVHCHNDLGMAVANSLAAVEAGADRVDG  222

Query  812  ATDSMSGMTSQPSVGAILASLEGTEHDPKLNLAHVRAIDSY  852
              + +       ++  + A+LEG   D  L+L  +R+I + 
Sbjct  223  TVNGIGERAGNAALEEVAAALEGLGVDTGLDLQRLRSIANL  263


>CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme.  This family 
covers two Prosite entries, the conserved lysine residue 
binds biotin in one group and lipoic acid in the other. Note 
that the HMM does not currently recognize the Glycine cleavage 
system H proteins.
Length=73

 Score = 85.7 bits (213),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 5/72 (7%)

Query  1124  QIGAPMSGV-----VVEIRVHEGSEVKKGDPVAVLSAMKMEMVISAPHSGKVSGLLVKEG  1178
             +I +PM G      VVE  V  G +VK G P+A + AMKMEM I AP +G V  +LV EG
Sbjct  2     EIKSPMIGESVREGVVEWLVKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPEG  61

Query  1179  DSVDGQDLICKI  1190
             D+V+  D + KI
Sbjct  62    DTVEVGDPLAKI  73



Lambda      K        H        a         alpha
   0.319    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1530276848


Query= TCONS_00030330

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00030331

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00030333

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00030334

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00030335

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426258 pfam01423, LSM, LSM domain. The LSM domain contains Sm...  64.8    3e-14


>CDD:426258 pfam01423, LSM, LSM domain.  The LSM domain contains Sm proteins 
as well as other related LSM (Like Sm) proteins. The U1, 
U2, U4/U6, and U5 small nuclear ribonucleoprotein particles 
(snRNPs) involved in pre-mRNA splicing contain seven Sm proteins 
(B/B', D1, D2, D3, E, F and G) in common, which assemble 
around the Sm site present in four of the major spliceosomal 
small nuclear RNAs. The U6 snRNP binds to the LSM (Like 
Sm) proteins. Sm proteins are also found in archaebacteria, 
which do not have any splicing apparatus suggesting a more general 
role for Sm proteins. All Sm proteins contain a common 
sequence motif in two segments, Sm1 and Sm2, separated by 
a short variable linker. This family also includes the bacterial 
Hfq (host factor Q) proteins. Hfq are also RNA-binding 
proteins, that form hexameric rings.
Length=66

 Score = 64.8 bits (159),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 24/76 (32%), Positives = 37/76 (49%), Gaps = 18/76 (24%)

Query  130  LINYRMRITLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGPSNAPLVEAEE  189
            L+  R+ + L +GR++ G +  FD+ MNLVL D EE  +                    E
Sbjct  6    LLGKRVLVELKNGRELRGTLKGFDQFMNLVLDDVEETIKDG------------------E  47

Query  190  KRTLGLTIVRGTHVVS  205
             R LGL ++RG ++V 
Sbjct  48   VRKLGLVLIRGNNIVL  63



Lambda      K        H        a         alpha
   0.319    0.141    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00030336

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00030337

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041)   135     4e-43


>CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041).  
Length=110

 Score = 135 bits (342),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 31/97 (32%), Positives = 50/97 (52%), Gaps = 1/97 (1%)

Query  23   STHFWGPASNFGIPVAAVMDTQKDPEIISGKMTAALTIYSATFMRYALAVSPKNYLLFAC  82
            + HFW P   +G+ +A + D ++ PE ISG    AL    A + R++L + PKNYLL + 
Sbjct  14   TVHFWAPVMKWGLVIAGISDLKRPPEKISGPQNLALLATGAIWTRWSLVIKPKNYLLASV  73

Query  83   HFINCSAQMTQGYRYLSYWNWGGRE-AKLAEAAKQGK  118
            +F      + Q  R L+Y    G   ++  +  K+G 
Sbjct  74   NFFLGCVGLYQVSRILNYRYSQGDSKSQAKKYIKEGA  110



Lambda      K        H        a         alpha
   0.320    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00030340

Length=72
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041)   81.5    1e-22


>CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041).  
Length=110

 Score = 81.5 bits (202),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 19/66 (29%), Positives = 31/66 (47%), Gaps = 1/66 (2%)

Query  1    MTAALTIYSATFMRYALAVSPKNYLLFACHFINCSAQMTQGYRYLSYWNWGGRE-AKLAE  59
               AL    A + R++L + PKNYLL + +F      + Q  R L+Y    G   ++  +
Sbjct  45   QNLALLATGAIWTRWSLVIKPKNYLLASVNFFLGCVGLYQVSRILNYRYSQGDSKSQAKK  104

Query  60   AAKQGK  65
              K+G 
Sbjct  105  YIKEGA  110



Lambda      K        H        a         alpha
   0.321    0.129    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00030338

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041)   135     6e-43


>CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041).  
Length=110

 Score = 135 bits (341),  Expect = 6e-43, Method: Composition-based stats.
 Identities = 31/97 (32%), Positives = 50/97 (52%), Gaps = 1/97 (1%)

Query  23   STHFWGPASNFGIPVAAVMDTQKDPEIISGKMTAALTIYSATFMRYALAVSPKNYLLFAC  82
            + HFW P   +G+ +A + D ++ PE ISG    AL    A + R++L + PKNYLL + 
Sbjct  14   TVHFWAPVMKWGLVIAGISDLKRPPEKISGPQNLALLATGAIWTRWSLVIKPKNYLLASV  73

Query  83   HFINCSAQMTQGYRYLSYWKWGGRE-AKLAEAAKQGK  118
            +F      + Q  R L+Y    G   ++  +  K+G 
Sbjct  74   NFFLGCVGLYQVSRILNYRYSQGDSKSQAKKYIKEGA  110



Lambda      K        H        a         alpha
   0.320    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00034911

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041)   135     6e-43


>CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041).  
Length=110

 Score = 135 bits (341),  Expect = 6e-43, Method: Composition-based stats.
 Identities = 31/97 (32%), Positives = 50/97 (52%), Gaps = 1/97 (1%)

Query  23   STHFWGPASNFGIPVAAVMDTQKDPEIISGKMTAALTIYSATFMRYALAVSPKNYLLFAC  82
            + HFW P   +G+ +A + D ++ PE ISG    AL    A + R++L + PKNYLL + 
Sbjct  14   TVHFWAPVMKWGLVIAGISDLKRPPEKISGPQNLALLATGAIWTRWSLVIKPKNYLLASV  73

Query  83   HFINCSAQMTQGYRYLSYWKWGGRE-AKLAEAAKQGK  118
            +F      + Q  R L+Y    G   ++  +  K+G 
Sbjct  74   NFFLGCVGLYQVSRILNYRYSQGDSKSQAKKYIKEGA  110



Lambda      K        H        a         alpha
   0.320    0.130    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00030339

Length=85
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041)   101     2e-30


>CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041).  
Length=110

 Score = 101 bits (254),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 25/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query  1    MDTQKDPEIISGKMTAALTIYSATFMRYALAVSPKNYLLFACHFINCSAQMTQGYRYLSY  60
             D ++ PE ISG    AL    A + R++L + PKNYLL + +F      + Q  R L+Y
Sbjct  32   SDLKRPPEKISGPQNLALLATGAIWTRWSLVIKPKNYLLASVNFFLGCVGLYQVSRILNY  91

Query  61   WNWGGRE-AKLAEAAKQGK  78
                G   ++  +  K+G 
Sbjct  92   RYSQGDSKSQAKKYIKEGA  110



Lambda      K        H        a         alpha
   0.319    0.129    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00034912

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041)   133     4e-42


>CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041).  
Length=110

 Score = 133 bits (336),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 0/79 (0%)

Query  23   STHFWGPASNFGIPVAAVMDTQKDPEIISGKMTAALTIYSATFMRYALAVSPKNYLLFAC  82
            + HFW P   +G+ +A + D ++ PE ISG    AL    A + R++L + PKNYLL + 
Sbjct  14   TVHFWAPVMKWGLVIAGISDLKRPPEKISGPQNLALLATGAIWTRWSLVIKPKNYLLASV  73

Query  83   HFINCSAQMTQGYRYLSYW  101
            +F      + Q  R L+Y 
Sbjct  74   NFFLGCVGLYQVSRILNYR  92



Lambda      K        H        a         alpha
   0.321    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00034913

Length=119
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041)   129     6e-41


>CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041).  
Length=110

 Score = 129 bits (327),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 29/97 (30%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query  23   STHFWGPASNFGIPVAAVMDTQKDPEIISGKMTAALTIYSATFMRYALAVSPKNYLLFAC  82
            + HFW P   +G+ +A + D ++ PE ISG    AL    A + R++L + PKNYLL + 
Sbjct  14   TVHFWAPVMKWGLVIAGISDLKRPPEKISGPQNLALLATGAIWTRWSLVIKPKNYLLASV  73

Query  83   HFINCSAQMTQGYRW-------GGREAKLAEAAKQGK  112
            +F      + Q  R        G  +++  +  K+G 
Sbjct  74   NFFLGCVGLYQVSRILNYRYSQGDSKSQAKKYIKEGA  110



Lambda      K        H        a         alpha
   0.320    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00030341

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041)   135     4e-43


>CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041).  
Length=110

 Score = 135 bits (342),  Expect = 4e-43, Method: Composition-based stats.
 Identities = 31/97 (32%), Positives = 50/97 (52%), Gaps = 1/97 (1%)

Query  23   STHFWGPASNFGIPVAAVMDTQKDPEIISGKMTAALTIYSATFMRYALAVSPKNYLLFAC  82
            + HFW P   +G+ +A + D ++ PE ISG    AL    A + R++L + PKNYLL + 
Sbjct  14   TVHFWAPVMKWGLVIAGISDLKRPPEKISGPQNLALLATGAIWTRWSLVIKPKNYLLASV  73

Query  83   HFINCSAQMTQGYRYLSYWNWGGRE-AKLAEAAKQGK  118
            +F      + Q  R L+Y    G   ++  +  K+G 
Sbjct  74   NFFLGCVGLYQVSRILNYRYSQGDSKSQAKKYIKEGA  110



Lambda      K        H        a         alpha
   0.320    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00034914

Length=72
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041)   81.5    1e-22


>CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041).  
Length=110

 Score = 81.5 bits (202),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 19/66 (29%), Positives = 31/66 (47%), Gaps = 1/66 (2%)

Query  1    MTAALTIYSATFMRYALAVSPKNYLLFACHFINCSAQMTQGYRYLSYWNWGGRE-AKLAE  59
               AL    A + R++L + PKNYLL + +F      + Q  R L+Y    G   ++  +
Sbjct  45   QNLALLATGAIWTRWSLVIKPKNYLLASVNFFLGCVGLYQVSRILNYRYSQGDSKSQAKK  104

Query  60   AAKQGK  65
              K+G 
Sbjct  105  YIKEGA  110



Lambda      K        H        a         alpha
   0.321    0.129    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00034915

Length=85
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041)   101     2e-30


>CDD:427425 pfam03650, MPC, Uncharacterized protein family (UPF0041).  
Length=110

 Score = 101 bits (254),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 25/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query  1    MDTQKDPEIISGKMTAALTIYSATFMRYALAVSPKNYLLFACHFINCSAQMTQGYRYLSY  60
             D ++ PE ISG    AL    A + R++L + PKNYLL + +F      + Q  R L+Y
Sbjct  32   SDLKRPPEKISGPQNLALLATGAIWTRWSLVIKPKNYLLASVNFFLGCVGLYQVSRILNY  91

Query  61   WNWGGRE-AKLAEAAKQGK  78
                G   ++  +  K+G 
Sbjct  92   RYSQGDSKSQAKKYIKEGA  110



Lambda      K        H        a         alpha
   0.319    0.129    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00030342

Length=580
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                137     2e-35


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 137 bits (346),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 102/450 (23%), Positives = 171/450 (38%), Gaps = 46/450 (10%)

Query  145  GVFVPTTLNVLSILMFLRFGFVLGQAGLLGMLGLLVASYTINLVTTMSLSAIATNGTVRG  204
             V +     V+   +F+  G VLGQAG  G L   + S  +  +  +SL  I+TNG    
Sbjct  1    HVQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNG-PVS  59

Query  205  GGAYYLISRSLGPEFGGSIGIVFYLGYVLNTGMNAVGLVDCFTQNFGTESGNWANFLEEG  264
            GG Y   SR LGP  G + G  ++L ++    +                   W    +  
Sbjct  60   GGFYTYASRFLGPSLGFATGWNYWLSWITVLALELTAASILI--------QFWELVPD--  109

Query  265  FWWQYLWGTVVLVLCTTICLAGSSMFARASNGLLVILLVATFSIPLSVIAMKPFSNPELN  324
              + ++WG V LVL T I L G   +  A     +I ++A   I   ++ +   S    N
Sbjct  110  IPYLWVWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAI--IGFIIVGIILLSGGNPN  167

Query  325  IE--FTGIRLQTLMDNLKPRLTKGAAGSQINGRENFQDLFGILFPATGGIFAGASMSGDL  382
                F  +      +N  P   KG              +F I F A  GI      +G++
Sbjct  168  DGAIFRYLGDNGGKNNFPPGFGKGFIS-----------VFVIAFFAFTGIELVGIAAGEV  216

Query  383  KNPSKSIPKGTLYGLALTFVTYTLVILA------------MAASITRESFYKNTSVLQLV  430
            KNP KSIPK  L  +    + Y L +LA            +  S +  S +        +
Sbjct  217  KNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGI  276

Query  431  NISGVVILLGEFATSFFSSLMGVIGSAKLLQAIARDSLLPGLSLLGKGSKKSDDPVYAII  490
            +    +I       +  ++   +   +++L ++ARD          K   K   P+ AI+
Sbjct  277  SGLAPLINAVILTAALSAANSSLYSGSRMLYSLARD---GLAPKFLKKVDKRGVPLRAIL  333

Query  491  LTFVFAQLTMLFDINQIASFVTMTYLMTFL-VTNLACFLLKIGSAPNFRPSFHYFNWQTA  549
            ++ V + L +L  +  +   +   +L+    ++ L  + L   S   FR +F Y      
Sbjct  334  VSMVISLLALL--LASLNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSID  391

Query  550  AAGTLVCGASMFFVDGLYATGCVGILIVLF  579
                      +  + GL A   + ILI+ F
Sbjct  392  ELPFKAPLGPLGVILGLAA--IIIILIIQF  419



Lambda      K        H        a         alpha
   0.321    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 729280864


Query= TCONS_00030343

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                111     1e-27


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 111 bits (280),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 89/404 (22%), Positives = 151/404 (37%), Gaps = 46/404 (11%)

Query  1    MSLSAIATNGTVRGGGAYYLISRSLGPEFGGSIGIVFYLGYVLNTGMNAVGLVDCFTQNF  60
            +SL  I+TNG    GG Y   SR LGP  G + G  ++L ++    +             
Sbjct  47   LSLGEISTNG-PVSGGFYTYASRFLGPSLGFATGWNYWLSWITVLALELTAASILI----  101

Query  61   GTESGNWANFLEEGFWWQYLWGTVVLVLCTTICLAGSSMFARASNGLLVILLVATFSIPL  120
                  W    +    + ++WG V LVL T I L G   +  A     +I ++A   I  
Sbjct  102  ----QFWELVPD--IPYLWVWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAI--IGF  153

Query  121  SVIAMKPFSNPELNIE--FTGIRLQTLMDNLKPRLTKGAAGSQINGRENFQDLFGILFPA  178
             ++ +   S    N    F  +      +N  P   KG              +F I F A
Sbjct  154  IIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGFGKGFIS-----------VFVIAFFA  202

Query  179  TGGIFAGASMSGDLKNPSKSIPKGTLYGLALTFVTYTLVILA------------MAASIT  226
              GI      +G++KNP KSIPK  L  +    + Y L +LA            +  S +
Sbjct  203  FTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPWNDPGLLNDSAS  262

Query  227  RESFYKNTSVLQLVNISGVVILLGEFATSFFSSLMGVIGSAKLLQAIARDSLLPGLSLLG  286
              S +        ++    +I       +  ++   +   +++L ++ARD          
Sbjct  263  AASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLARD---GLAPKFL  319

Query  287  KGSKKSDDPVYAIILTFVFAQLTMLFDINQIASFVTMTYLMTFL-VTNLACFLLKIGSAP  345
            K   K   P+ AI+++ V + L +L  +  +   +   +L+    ++ L  + L   S  
Sbjct  320  KKVDKRGVPLRAILVSMVISLLALL--LASLNPAIVFNFLLAISGLSGLIVWGLISLSHL  377

Query  346  NFRPSFHYFNWQTAAAGTLVCGASMFFVDGLYATGCVGILIVLF  389
             FR +F Y                +  + GL A   + ILI+ F
Sbjct  378  RFRKAFKYQGRSIDELPFKAPLGPLGVILGLAA--IIIILIIQF  419



Lambda      K        H        a         alpha
   0.325    0.140    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00030344

Length=1228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                164     1e-43
CDD:404414 pfam13520, AA_permease_2, Amino acid permease              73.9    5e-14


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 164 bits (416),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 115/498 (23%), Positives = 190/498 (38%), Gaps = 63/498 (13%)

Query  133  GVFVPTTLNVLSILMFLRFGFVLGQAGLLGMLGLLVASYTINLVTTMSLSAIATNGTVRG  192
             V +     V+   +F+  G VLGQAG  G L   + S  +  +  +SL  I+TNG    
Sbjct  1    HVQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNG-PVS  59

Query  193  GGAYYLISRSLGPEFGGSIGIVFYLGYVLNTGMNAVGLVDCFTQNFGTESGNWANFLEEG  252
            GG Y   SR LGP  G + G  ++L ++    +                   W    +  
Sbjct  60   GGFYTYASRFLGPSLGFATGWNYWLSWITVLALELTAASILI--------QFWELVPD--  109

Query  253  FWWQYLWGTVVLVLCTTICLAGSSMFARASNGLLVILLVATFSIPLSVIAMKPFSNPELN  312
              + ++WG V LVL T I L G   +  A     +I ++A   I   ++ +   S    N
Sbjct  110  IPYLWVWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAI--IGFIIVGIILLSGGNPN  167

Query  313  IE--FTGIRLQTLMDNLKPRLTKGAAGSQINGRENFQDLFGILFPATGGIFAGASMSGDL  370
                F  +      +N  P   KG              +F I F A  GI      +G++
Sbjct  168  DGAIFRYLGDNGGKNNFPPGFGKGFIS-----------VFVIAFFAFTGIELVGIAAGEV  216

Query  371  KNPSKSIPKGTLYGLALTFVTYTLVILA------------MAASITRESFYKNTSVLQLV  418
            KNP KSIPK  L  +    + Y L +LA            +  S +  S +        +
Sbjct  217  KNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGI  276

Query  419  NISGVVILLGEFATSFFSSLMGVIGSAKLLQAIARDSLLPGLSLLGKGSKKSDDPVYAII  478
            +    +I       +  ++   +   +++L ++ARD          K   K   P+ AI+
Sbjct  277  SGLAPLINAVILTAALSAANSSLYSGSRMLYSLARD---GLAPKFLKKVDKRGVPLRAIL  333

Query  479  LTFVFAQLTMLFDINQIASFVTMTYLMTFL-VTNLACFLLKIGSAPNFRPSFHYFNWQTA  537
            ++ V + L +L  +  +   +   +L+    ++ L  + L   S   FR +F Y      
Sbjct  334  VSMVISLLALL--LASLNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSID  391

Query  538  AAGTLVCGASMFFVDGLYATGCVGILI---------------SWGDVSQSLIYHQVRKYL  582
                      +  + GL A   + ILI               +WG  S +  Y  V  +L
Sbjct  392  ELPFKAPLGPLGVILGLAA--IIIILIIQFLYAFLPVPGGPKNWGAGSFAAAYLIVLLFL  449

Query  583  LRL--RQEHVKFWRPQIL  598
            + L   + HVK W+PQ+L
Sbjct  450  IILIGVKLHVKNWKPQLL  467


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 73.9 bits (182),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 69/346 (20%), Positives = 133/346 (38%), Gaps = 49/346 (14%)

Query  191  RGGGAYYLISRSLGPEFGGSIGIVFYLGYVLNTGMNAVGLVDCFTQNFGTESGNWANFLE  250
            R GG Y  +  + G       G   +  YVL    +A           G +         
Sbjct  60   RSGGIYVYLENAFGKFVAFLAGWSNWFAYVLGLASSASVAASYLLSALGPDLVPTT----  115

Query  251  EGFWWQYLWGTVVLVLCTTICLAGSSMFARASN--GLLVILLVATFSIPLSVIAMKPFSN  308
               W  Y     +L++   I + G    A+  N  G+L +LL     I L ++       
Sbjct  116  ---WLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGF  172

Query  309  PELNIEFTGIRLQTLMDNLKPRLTKGAAGSQINGRENFQDLFGILFPATGGIFAGASMSG  368
              L+ E+             P    G                G+L+ +  G  + A++S 
Sbjct  173  NLLSGEW---------HTFFPDGWPGVFAG----------FLGVLW-SFTGFESAANVSE  212

Query  369  DLKNPSKSIPKGTLYGLALTFVTYTLVILAMAASITRESFYKNTSVLQLVNI--------  420
            ++K   +++PK    G+ +  V Y LV +A    +  +    ++ + Q+  +        
Sbjct  213  EVKK--RNVPKAIFIGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGK  270

Query  421  --SGVVILLGEFATSFFSSLMGVIGSAKLLQAIARDSLLPGLSLLGKGSKKSDDPVYAII  478
              + +V++L   +    +    ++G+++LL A+ARD +LP      K +K    P+ AII
Sbjct  271  WGAIIVVILLALS-LLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKFG-SPIRAII  328

Query  479  LTFVFAQLTMLF------DINQIASFVTMTYLMTFLVTNLACFLLK  518
            LT + + + +L         N + S     YL+++L+  +   +L+
Sbjct  329  LTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLILR  374



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1579145178


Query= TCONS_00030345

Length=538


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 676787502


Query= TCONS_00030346

Length=538


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 676787502


Query= TCONS_00030347

Length=261


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00030348

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00030349

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00030350

Length=353


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00030351

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00030352

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00034917

Length=80
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family   97.2    2e-29


>CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family.  
Length=67

 Score = 97.2 bits (243),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 55/69 (80%), Gaps = 2/69 (3%)

Query  2   PREVSDIKQFIEICRRKDASSARIKRNRATQQIKFKVRCHRFIYTLVLKDSDKADKLKQS  61
           P+E++DIK F+EI RRKDA S RIK+N+     KFKVRC R++YTLV+ D +KA+KLKQS
Sbjct  1   PKEITDIKDFLEIARRKDAKSVRIKKNK--DNTKFKVRCSRYLYTLVVADKEKAEKLKQS  58

Query  62  LPPALKVVD  70
           LPP LKV +
Sbjct  59  LPPGLKVKE  67



Lambda      K        H        a         alpha
   0.321    0.134    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00034919

Length=59
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family   66.0    3e-17


>CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family.  
Length=67

 Score = 66.0 bits (162),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 24/39 (62%), Positives = 30/39 (77%), Gaps = 2/39 (5%)

Query  2   PREVSDIKQFIEICRRKDASSARIKRNRATQQIKFKVRC  40
           P+E++DIK F+EI RRKDA S RIK+N+     KFKVRC
Sbjct  1   PKEITDIKDFLEIARRKDAKSVRIKKNK--DNTKFKVRC  37



Lambda      K        H        a         alpha
   0.323    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00034918

Length=80
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family   96.8    5e-29


>CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family.  
Length=67

 Score = 96.8 bits (242),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 41/64 (64%), Positives = 52/64 (81%), Gaps = 2/64 (3%)

Query  2   PREVSDIKQFIEICRRKDASSARIKRNRATQQIKFKVRCHRFIYTLVLKDSDKADKLKQS  61
           P+E++DIK F+EI RRKDA S RIK+N+     KFKVRC R++YTLV+ D +KA+KLKQS
Sbjct  1   PKEITDIKDFLEIARRKDAKSVRIKKNK--DNTKFKVRCSRYLYTLVVADKEKAEKLKQS  58

Query  62  LPPG  65
           LPPG
Sbjct  59  LPPG  62



Lambda      K        H        a         alpha
   0.320    0.134    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00030359

Length=63
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family   59.5    1e-14


>CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family.  
Length=67

 Score = 59.5 bits (145),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 33/69 (48%), Positives = 41/69 (59%), Gaps = 19/69 (28%)

Query  2   PREVSDIKQFIEICRRKDASSARIKRNRATQQIKFK-----------------ADKLKQS  44
           P+E++DIK F+EI RRKDA S RIK+N+     KFK                 A+KLKQS
Sbjct  1   PKEITDIKDFLEIARRKDAKSVRIKKNK--DNTKFKVRCSRYLYTLVVADKEKAEKLKQS  58

Query  45  LPPALKVVD  53
           LPP LKV +
Sbjct  59  LPPGLKVKE  67



Lambda      K        H        a         alpha
   0.317    0.130    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00030353

Length=80
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family   97.2    2e-29


>CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family.  
Length=67

 Score = 97.2 bits (243),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 55/69 (80%), Gaps = 2/69 (3%)

Query  2   PREVSDIKQFIEICRRKDASSARIKRNRATQQIKFKVRCHRFIYTLVLKDSDKADKLKQS  61
           P+E++DIK F+EI RRKDA S RIK+N+     KFKVRC R++YTLV+ D +KA+KLKQS
Sbjct  1   PKEITDIKDFLEIARRKDAKSVRIKKNK--DNTKFKVRCSRYLYTLVVADKEKAEKLKQS  58

Query  62  LPPALKVVD  70
           LPP LKV +
Sbjct  59  LPPGLKVKE  67



Lambda      K        H        a         alpha
   0.321    0.134    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00030355

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00030354

Length=71
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family   102     1e-31


>CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family.  
Length=67

 Score = 102 bits (258),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 41/64 (64%), Positives = 52/64 (81%), Gaps = 2/64 (3%)

Query  2   PREVSDIKQFIEICRRKDASSARIKRNRATQQIKFKVRCHRFIYTLVLKDSDKADKLKQS  61
           P+E++DIK F+EI RRKDA S RIK+N+     KFKVRC R++YTLV+ D +KA+KLKQS
Sbjct  1   PKEITDIKDFLEIARRKDAKSVRIKKNK--DNTKFKVRCSRYLYTLVVADKEKAEKLKQS  58

Query  62  LPPG  65
           LPPG
Sbjct  59  LPPG  62



Lambda      K        H        a         alpha
   0.326    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00030356

Length=80
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family   96.8    4e-29


>CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family.  
Length=67

 Score = 96.8 bits (242),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 41/64 (64%), Positives = 52/64 (81%), Gaps = 2/64 (3%)

Query  2   PREVSDIKQFIEICRRKDASSARIKRNRATQQIKFKVRCHRFIYTLVLKDSDKADKLKQS  61
           P+E++DIK F+EI RRKDA S RIK+N+     KFKVRC R++YTLV+ D +KA+KLKQS
Sbjct  1   PKEITDIKDFLEIARRKDAKSVRIKKNK--DNTKFKVRCSRYLYTLVVADKEKAEKLKQS  58

Query  62  LPPG  65
           LPPG
Sbjct  59  LPPG  62



Lambda      K        H        a         alpha
   0.321    0.135    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00030358

Length=80
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family   96.8    4e-29


>CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family.  
Length=67

 Score = 96.8 bits (242),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 41/64 (64%), Positives = 52/64 (81%), Gaps = 2/64 (3%)

Query  2   PREVSDIKQFIEICRRKDASSARIKRNRATQQIKFKVRCHRFIYTLVLKDSDKADKLKQS  61
           P+E++DIK F+EI RRKDA S RIK+N+     KFKVRC R++YTLV+ D +KA+KLKQS
Sbjct  1   PKEITDIKDFLEIARRKDAKSVRIKKNK--DNTKFKVRCSRYLYTLVVADKEKAEKLKQS  58

Query  62  LPPG  65
           LPPG
Sbjct  59  LPPG  62



Lambda      K        H        a         alpha
   0.321    0.135    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00030357

Length=80
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family    99     3e-30


>CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family.  
Length=67

 Score =  99 bits (250),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 44/69 (64%), Positives = 56/69 (81%), Gaps = 2/69 (3%)

Query  2   PREVSDIKQFIEICRRKDASSARIKRNRATQQIKFKVRCHRFIYTLVLKDSDKADKLKQS  61
           P+E++DIK F+EI RRKDA S RIK+N+     KFKVRC R++YTLV+ D +KA+KLKQS
Sbjct  1   PKEITDIKDFLEIARRKDAKSVRIKKNK--DNTKFKVRCSRYLYTLVVADKEKAEKLKQS  58

Query  62  LPPGLKVVD  70
           LPPGLKV +
Sbjct  59  LPPGLKVKE  67



Lambda      K        H        a         alpha
   0.321    0.135    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00034920

Length=80
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family   96.5    5e-29


>CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family.  
Length=67

 Score = 96.5 bits (241),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 41/64 (64%), Positives = 52/64 (81%), Gaps = 2/64 (3%)

Query  2   PREVSDIKQFIEICRRKDASSARIKRNRATQQIKFKVRCHRFIYTLVLKDSDKADKLKQS  61
           P+E++DIK F+EI RRKDA S RIK+N+     KFKVRC R++YTLV+ D +KA+KLKQS
Sbjct  1   PKEITDIKDFLEIARRKDAKSVRIKKNK--DNTKFKVRCSRYLYTLVVADKEKAEKLKQS  58

Query  62  LPPG  65
           LPPG
Sbjct  59  LPPG  62



Lambda      K        H        a         alpha
   0.322    0.135    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00034921

Length=80
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family   96.8    4e-29


>CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family.  
Length=67

 Score = 96.8 bits (242),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 41/64 (64%), Positives = 52/64 (81%), Gaps = 2/64 (3%)

Query  2   PREVSDIKQFIEICRRKDASSARIKRNRATQQIKFKVRCHRFIYTLVLKDSDKADKLKQS  61
           P+E++DIK F+EI RRKDA S RIK+N+     KFKVRC R++YTLV+ D +KA+KLKQS
Sbjct  1   PKEITDIKDFLEIARRKDAKSVRIKKNK--DNTKFKVRCSRYLYTLVVADKEKAEKLKQS  58

Query  62  LPPG  65
           LPPG
Sbjct  59  LPPG  62



Lambda      K        H        a         alpha
   0.321    0.134    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00030360

Length=59
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family   69.9    8e-19


>CDD:460326 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family.  
Length=67

 Score = 69.9 bits (172),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 35/45 (78%), Gaps = 2/45 (4%)

Query  11  TAARIKRNRATQQIKFKVRCHRFIYTLVLKDSDKADKLKQSLPPG  55
            + RIK+N+     KFKVRC R++YTLV+ D +KA+KLKQSLPPG
Sbjct  20  KSVRIKKNK--DNTKFKVRCSRYLYTLVVADKEKAEKLKQSLPPG  62



Lambda      K        H        a         alpha
   0.324    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00030362

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 6...  279     2e-96


>CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 61.  Although 
weak endoglucanase activity has been demonstrated in several 
members of this family, they lack the clustered conserved 
catalytic acidic amino acids present in most glycoside 
hydrolases. Many members of this family lack measurable cellulase 
activity on their own, but enhance the activity of other 
cellulolytic enzymes. They are therefore unlikely to be true 
glycoside hydrolases. The subsrate-binding surface of this 
family is a flat Ig-like fold.
Length=208

 Score = 279 bits (716),  Expect = 2e-96, Method: Composition-based stats.
 Identities = 114/221 (52%), Positives = 133/221 (60%), Gaps = 16/221 (7%)

Query  23   GFVSGIVADGKYYGGYLVNQYPYMSNPPDTIAWSTTATDLGFVDGTGYQSPDIICHRDAK  82
            G V+ +V +G  YGGY     P        I W+   TD G V  T   SPDI C+  A 
Sbjct  1    GTVTSLVVNGVTYGGYDPVSDP-------VIRWTRPNTDNGPV--TDVTSPDIRCN-GAG  50

Query  83   NGKLTATVAAGSQIEFQWT-TWPESHHGPLITYLAPCNG-DCATVDKTTLKFVKIAAQGL  140
                 A VAAGS + FQWT  WPESH GP+ITYLA C G DCATVD T L + KI   GL
Sbjct  51   PAATAAPVAAGSTVTFQWTQGWPESHKGPVITYLAKCPGGDCATVDGTGLVWFKIDEAGL  110

Query  141  IDGSNPPGVWADDEMIANNNTATVTIPASYAPGNYVLRHEIIALHSAGNLNGAQNYPQCF  200
              G      WA D++IANN T TVTIP+  APGNY+LRHEIIALHSAG++ GAQ YPQC 
Sbjct  111  DSGG---STWATDKLIANNGTWTVTIPSDLAPGNYLLRHEIIALHSAGSVGGAQFYPQCA  167

Query  201  NIQITGGGSAQ-GSGTAGTSLYKNTDPGIKFDIYSDLSGGY  240
             +++TG GS   G G +    YK TDPGI F+IYS     Y
Sbjct  168  QLEVTGSGSGTPGPGVSFPGAYKATDPGILFNIYSPGPTSY  208



Lambda      K        H        a         alpha
   0.315    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00034922

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 6...  279     2e-96


>CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 61.  Although 
weak endoglucanase activity has been demonstrated in several 
members of this family, they lack the clustered conserved 
catalytic acidic amino acids present in most glycoside 
hydrolases. Many members of this family lack measurable cellulase 
activity on their own, but enhance the activity of other 
cellulolytic enzymes. They are therefore unlikely to be true 
glycoside hydrolases. The subsrate-binding surface of this 
family is a flat Ig-like fold.
Length=208

 Score = 279 bits (716),  Expect = 2e-96, Method: Composition-based stats.
 Identities = 114/221 (52%), Positives = 133/221 (60%), Gaps = 16/221 (7%)

Query  23   GFVSGIVADGKYYGGYLVNQYPYMSNPPDTIAWSTTATDLGFVDGTGYQSPDIICHRDAK  82
            G V+ +V +G  YGGY     P        I W+   TD G V  T   SPDI C+  A 
Sbjct  1    GTVTSLVVNGVTYGGYDPVSDP-------VIRWTRPNTDNGPV--TDVTSPDIRCN-GAG  50

Query  83   NGKLTATVAAGSQIEFQWT-TWPESHHGPLITYLAPCNG-DCATVDKTTLKFVKIAAQGL  140
                 A VAAGS + FQWT  WPESH GP+ITYLA C G DCATVD T L + KI   GL
Sbjct  51   PAATAAPVAAGSTVTFQWTQGWPESHKGPVITYLAKCPGGDCATVDGTGLVWFKIDEAGL  110

Query  141  IDGSNPPGVWADDEMIANNNTATVTIPASYAPGNYVLRHEIIALHSAGNLNGAQNYPQCF  200
              G      WA D++IANN T TVTIP+  APGNY+LRHEIIALHSAG++ GAQ YPQC 
Sbjct  111  DSGG---STWATDKLIANNGTWTVTIPSDLAPGNYLLRHEIIALHSAGSVGGAQFYPQCA  167

Query  201  NIQITGGGSAQ-GSGTAGTSLYKNTDPGIKFDIYSDLSGGY  240
             +++TG GS   G G +    YK TDPGI F+IYS     Y
Sbjct  168  QLEVTGSGSGTPGPGVSFPGAYKATDPGILFNIYSPGPTSY  208



Lambda      K        H        a         alpha
   0.315    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00034924

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 6...  262     4e-90


>CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 61.  Although 
weak endoglucanase activity has been demonstrated in several 
members of this family, they lack the clustered conserved 
catalytic acidic amino acids present in most glycoside 
hydrolases. Many members of this family lack measurable cellulase 
activity on their own, but enhance the activity of other 
cellulolytic enzymes. They are therefore unlikely to be true 
glycoside hydrolases. The subsrate-binding surface of this 
family is a flat Ig-like fold.
Length=208

 Score = 262 bits (672),  Expect = 4e-90, Method: Composition-based stats.
 Identities = 110/210 (52%), Positives = 127/210 (60%), Gaps = 16/210 (8%)

Query  11   SYGGYLVNQYPYMSNPPDTIAWSTTATDLGFVDGTGYQSPDIICHRDAKNGKLTATVAAG  70
            +YGGY     P        I W+   TD G V  T   SPDI C+  A      A VAAG
Sbjct  12   TYGGYDPVSDP-------VIRWTRPNTDNGPV--TDVTSPDIRCN-GAGPAATAAPVAAG  61

Query  71   SQIEFQWT-TWPESHHGPLITYLAPCNG-DCATVDKTTLKFVKIAAQGLIDGSNPPGVWA  128
            S + FQWT  WPESH GP+ITYLA C G DCATVD T L + KI   GL  G      WA
Sbjct  62   STVTFQWTQGWPESHKGPVITYLAKCPGGDCATVDGTGLVWFKIDEAGLDSGG---STWA  118

Query  129  DDEMIANNNTATVTIPASYAPGNYVLRHEIIALHSAGNLNGAQNYPQCFNIQITGGGSAQ  188
             D++IANN T TVTIP+  APGNY+LRHEIIALHSAG++ GAQ YPQC  +++TG GS  
Sbjct  119  TDKLIANNGTWTVTIPSDLAPGNYLLRHEIIALHSAGSVGGAQFYPQCAQLEVTGSGSGT  178

Query  189  -GSGTAGTSLYKNTDPGIKFDIYSDLSGGY  217
             G G +    YK TDPGI F+IYS     Y
Sbjct  179  PGPGVSFPGAYKATDPGILFNIYSPGPTSY  208



Lambda      K        H        a         alpha
   0.315    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00034923

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 6...  262     4e-90


>CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 61.  Although 
weak endoglucanase activity has been demonstrated in several 
members of this family, they lack the clustered conserved 
catalytic acidic amino acids present in most glycoside 
hydrolases. Many members of this family lack measurable cellulase 
activity on their own, but enhance the activity of other 
cellulolytic enzymes. They are therefore unlikely to be true 
glycoside hydrolases. The subsrate-binding surface of this 
family is a flat Ig-like fold.
Length=208

 Score = 262 bits (672),  Expect = 4e-90, Method: Composition-based stats.
 Identities = 110/210 (52%), Positives = 127/210 (60%), Gaps = 16/210 (8%)

Query  11   SYGGYLVNQYPYMSNPPDTIAWSTTATDLGFVDGTGYQSPDIICHRDAKNGKLTATVAAG  70
            +YGGY     P        I W+   TD G V  T   SPDI C+  A      A VAAG
Sbjct  12   TYGGYDPVSDP-------VIRWTRPNTDNGPV--TDVTSPDIRCN-GAGPAATAAPVAAG  61

Query  71   SQIEFQWT-TWPESHHGPLITYLAPCNG-DCATVDKTTLKFVKIAAQGLIDGSNPPGVWA  128
            S + FQWT  WPESH GP+ITYLA C G DCATVD T L + KI   GL  G      WA
Sbjct  62   STVTFQWTQGWPESHKGPVITYLAKCPGGDCATVDGTGLVWFKIDEAGLDSGG---STWA  118

Query  129  DDEMIANNNTATVTIPASYAPGNYVLRHEIIALHSAGNLNGAQNYPQCFNIQITGGGSAQ  188
             D++IANN T TVTIP+  APGNY+LRHEIIALHSAG++ GAQ YPQC  +++TG GS  
Sbjct  119  TDKLIANNGTWTVTIPSDLAPGNYLLRHEIIALHSAGSVGGAQFYPQCAQLEVTGSGSGT  178

Query  189  -GSGTAGTSLYKNTDPGIKFDIYSDLSGGY  217
             G G +    YK TDPGI F+IYS     Y
Sbjct  179  PGPGVSFPGAYKATDPGILFNIYSPGPTSY  208



Lambda      K        H        a         alpha
   0.315    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00030364

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 6...  279     2e-96


>CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 61.  Although 
weak endoglucanase activity has been demonstrated in several 
members of this family, they lack the clustered conserved 
catalytic acidic amino acids present in most glycoside 
hydrolases. Many members of this family lack measurable cellulase 
activity on their own, but enhance the activity of other 
cellulolytic enzymes. They are therefore unlikely to be true 
glycoside hydrolases. The subsrate-binding surface of this 
family is a flat Ig-like fold.
Length=208

 Score = 279 bits (716),  Expect = 2e-96, Method: Composition-based stats.
 Identities = 114/221 (52%), Positives = 133/221 (60%), Gaps = 16/221 (7%)

Query  23   GFVSGIVADGKYYGGYLVNQYPYMSNPPDTIAWSTTATDLGFVDGTGYQSPDIICHRDAK  82
            G V+ +V +G  YGGY     P        I W+   TD G V  T   SPDI C+  A 
Sbjct  1    GTVTSLVVNGVTYGGYDPVSDP-------VIRWTRPNTDNGPV--TDVTSPDIRCN-GAG  50

Query  83   NGKLTATVAAGSQIEFQWT-TWPESHHGPLITYLAPCNG-DCATVDKTTLKFVKIAAQGL  140
                 A VAAGS + FQWT  WPESH GP+ITYLA C G DCATVD T L + KI   GL
Sbjct  51   PAATAAPVAAGSTVTFQWTQGWPESHKGPVITYLAKCPGGDCATVDGTGLVWFKIDEAGL  110

Query  141  IDGSNPPGVWADDEMIANNNTATVTIPASYAPGNYVLRHEIIALHSAGNLNGAQNYPQCF  200
              G      WA D++IANN T TVTIP+  APGNY+LRHEIIALHSAG++ GAQ YPQC 
Sbjct  111  DSGG---STWATDKLIANNGTWTVTIPSDLAPGNYLLRHEIIALHSAGSVGGAQFYPQCA  167

Query  201  NIQITGGGSAQ-GSGTAGTSLYKNTDPGIKFDIYSDLSGGY  240
             +++TG GS   G G +    YK TDPGI F+IYS     Y
Sbjct  168  QLEVTGSGSGTPGPGVSFPGAYKATDPGILFNIYSPGPTSY  208



Lambda      K        H        a         alpha
   0.315    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00034925

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 6...  260     5e-90


>CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 61.  Although 
weak endoglucanase activity has been demonstrated in several 
members of this family, they lack the clustered conserved 
catalytic acidic amino acids present in most glycoside 
hydrolases. Many members of this family lack measurable cellulase 
activity on their own, but enhance the activity of other 
cellulolytic enzymes. They are therefore unlikely to be true 
glycoside hydrolases. The subsrate-binding surface of this 
family is a flat Ig-like fold.
Length=208

 Score = 260 bits (668),  Expect = 5e-90, Method: Composition-based stats.
 Identities = 105/196 (54%), Positives = 121/196 (62%), Gaps = 9/196 (5%)

Query  3    NPPDTIAWSTTATDLGFVDGTGYQSPDIICHRDAKNGKLTATVAAGSQIEFQWT-TWPES  61
                 I W+   TD G V  T   SPDI C+  A      A VAAGS + FQWT  WPES
Sbjct  19   VSDPVIRWTRPNTDNGPV--TDVTSPDIRCN-GAGPAATAAPVAAGSTVTFQWTQGWPES  75

Query  62   HHGPLITYLAPCNG-DCATVDKTTLKFVKIAAQGLIDGSNPPGVWADDEMIANNNTATVT  120
            H GP+ITYLA C G DCATVD T L + KI   GL  G      WA D++IANN T TVT
Sbjct  76   HKGPVITYLAKCPGGDCATVDGTGLVWFKIDEAGLDSGG---STWATDKLIANNGTWTVT  132

Query  121  IPASYAPGNYVLRHEIIALHSAGNLNGAQNYPQCFNIQITGGGSAQ-GSGTAGTSLYKNT  179
            IP+  APGNY+LRHEIIALHSAG++ GAQ YPQC  +++TG GS   G G +    YK T
Sbjct  133  IPSDLAPGNYLLRHEIIALHSAGSVGGAQFYPQCAQLEVTGSGSGTPGPGVSFPGAYKAT  192

Query  180  DPGIKFDIYSDLSGGY  195
            DPGI F+IYS     Y
Sbjct  193  DPGILFNIYSPGPTSY  208



Lambda      K        H        a         alpha
   0.315    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00034926

Length=86
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 6...  139     4e-44


>CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 61.  Although 
weak endoglucanase activity has been demonstrated in several 
members of this family, they lack the clustered conserved 
catalytic acidic amino acids present in most glycoside 
hydrolases. Many members of this family lack measurable cellulase 
activity on their own, but enhance the activity of other 
cellulolytic enzymes. They are therefore unlikely to be true 
glycoside hydrolases. The subsrate-binding surface of this 
family is a flat Ig-like fold.
Length=208

 Score = 139 bits (353),  Expect = 4e-44, Method: Composition-based stats.
 Identities = 52/87 (60%), Positives = 62/87 (71%), Gaps = 1/87 (1%)

Query  1    MIANNNTATVTIPASYAPGNYVLRHEIIALHSAGNLNGAQNYPQCFNIQITGGGSAQ-GS  59
            +IANN T TVTIP+  APGNY+LRHEIIALHSAG++ GAQ YPQC  +++TG GS   G 
Sbjct  122  LIANNGTWTVTIPSDLAPGNYLLRHEIIALHSAGSVGGAQFYPQCAQLEVTGSGSGTPGP  181

Query  60   GTAGTSLYKNTDPGIKFDIYSDLSGGY  86
            G +    YK TDPGI F+IYS     Y
Sbjct  182  GVSFPGAYKATDPGILFNIYSPGPTSY  208



Lambda      K        H        a         alpha
   0.313    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00030365

Length=96
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 6...  139     7e-44


>CDD:460918 pfam03443, Glyco_hydro_61, Glycosyl hydrolase family 61.  Although 
weak endoglucanase activity has been demonstrated in several 
members of this family, they lack the clustered conserved 
catalytic acidic amino acids present in most glycoside 
hydrolases. Many members of this family lack measurable cellulase 
activity on their own, but enhance the activity of other 
cellulolytic enzymes. They are therefore unlikely to be true 
glycoside hydrolases. The subsrate-binding surface of this 
family is a flat Ig-like fold.
Length=208

 Score = 139 bits (352),  Expect = 7e-44, Method: Composition-based stats.
 Identities = 52/87 (60%), Positives = 62/87 (71%), Gaps = 1/87 (1%)

Query  1    MIANNNTATVTIPASYAPGNYVLRHEIIALHSAGNLNGAQNYPQCFNIQITGGGSAQ-GS  59
            +IANN T TVTIP+  APGNY+LRHEIIALHSAG++ GAQ YPQC  +++TG GS   G 
Sbjct  122  LIANNGTWTVTIPSDLAPGNYLLRHEIIALHSAGSVGGAQFYPQCAQLEVTGSGSGTPGP  181

Query  60   GTAGTSLYKNTDPGIKFDIYSDLSGGY  86
            G +    YK TDPGI F+IYS     Y
Sbjct  182  GVSFPGAYKATDPGILFNIYSPGPTSY  208



Lambda      K        H        a         alpha
   0.314    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00034927

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.119    0.319    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00030366

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.119    0.319    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00030367

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.117    0.307    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00030369

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.118    0.306    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00030370

Length=364


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00030371

Length=474


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 588942336


Query= TCONS_00034928

Length=1003
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462447 pfam08367, M16C_assoc, Peptidase M16C associated. This...  253     4e-78
CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive dom...  73.6    2e-15


>CDD:462447 pfam08367, M16C_assoc, Peptidase M16C associated.  This domain 
appears in eukaryotes as well as bacteria and tends to be 
found near the C-terminus of the metalloprotease M16C (pfam05193).
Length=248

 Score = 253 bits (649),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 90/259 (35%), Positives = 142/259 (55%), Gaps = 11/259 (4%)

Query  461  MVGTPSYNKDLDDQEMVRKEKKLSELVERHGSVEQAVSALAEEELQLLKIQEEAQNADLS  520
            M      +++L+++E  R   K + L E      +    + E  L+L + QE   + DLS
Sbjct  1    MKPDEGLSEELEEEEKERLAAKKASLSE------EEKEKIVERTLELKERQEAPDSEDLS  54

Query  521  CLPSLRVEDISREKERKPVRESKMDDIDVVWREAPTNGLTYFQALNSFEELPDDLRLLLP  580
            CLP+L + DI RE E +P  E  +  + V+  + PTNG+ YF+A+    +LP++L   LP
Sbjct  55   CLPTLTLSDIPREIEVEPEEE--IGGVPVLHHDVPTNGIVYFRAIFDLSDLPEELLPYLP  112

Query  581  LFNDCIMRLGTGDKTMEQWEDLIKLKTGGITTSTLHTSSPTELGKFREGLQFSGYALDNN  640
            LF   +  LGT     E+ E  I LKTGGI+ S   +S P +L K+  G   SG ALD N
Sbjct  113  LFTSVLTELGTKKYDYEELEQEINLKTGGISASPSVSSDPDDLDKYEPGFVVSGKALDRN  172

Query  641  IPDMLQILTTLVTETDFTSPHAPAMIQELLRMTTNGALDAVAGSGHRYALNAAAAGLSRS  700
            +P M  +L  ++ ET F        ++EL++ + +   +++A SGH YA++ AA+ LS +
Sbjct  173  VPKMFDLLREILLETKFDD---KERLKELVQESKSRLENSIASSGHSYAMSRAASYLSPA  229

Query  701  FWVQEQQSGLAQLQATANL  719
              + EQ SGL+Q +   +L
Sbjct  230  GALSEQLSGLSQYKFLKDL  248


>CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.  Peptidase 
M16 consists of two structurally related domains. One 
is the active peptidase, whereas the other is inactive. The 
two domains hold the substrate like a clamp.
Length=181

 Score = 73.6 bits (181),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 36/191 (19%), Positives = 70/191 (37%), Gaps = 13/191 (7%)

Query  204  DLTHQQLVDFSKRNYHPSNAKILTYGDMPLSVHLKQIGEVLDGFEKGQADTDVKLPLDLS  263
             LT + L DF K++Y P N  ++  GD+     L    +                     
Sbjct  1    SLTREDLRDFYKKHYSPDNMVLVIVGDVDHEELLDLAEKYFGDLPA-------SPKGKPR  53

Query  264  RGPLNVTVPGPIDTFASEDKQYKTSTSWY--MGDTTDVVETFSVGILSSLLLDGYGSPMY  321
              PL        +    +  + +   +         +  ++ ++ +L+ LL  G  S ++
Sbjct  54   PPPLEPAKLKGREVVVPKKDEPQAHLALAFPGPPLNNDEDSLALDVLNELLGGGMSSRLF  113

Query  322  RALIE-GGLGSSFTPNTGLDSSGRVPIFSVGLTGVSEADAPKVKSTIKRVFEESLSSGFN  380
            + L E  GL  S   ++  DS     +F +  T   E +  +V   I    E+    G  
Sbjct  114  QELREKEGLAYSV--SSFNDSYSDSGLFGIYATVDPE-NVDEVIELILEELEKLAQEGVT  170

Query  381  DEKVQGFLHQL  391
            +E+++   +QL
Sbjct  171  EEELERAKNQL  181



Lambda      K        H        a         alpha
   0.316    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1284199532


Query= TCONS_00030372

Length=1003
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462447 pfam08367, M16C_assoc, Peptidase M16C associated. This...  253     4e-78
CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive dom...  73.6    2e-15


>CDD:462447 pfam08367, M16C_assoc, Peptidase M16C associated.  This domain 
appears in eukaryotes as well as bacteria and tends to be 
found near the C-terminus of the metalloprotease M16C (pfam05193).
Length=248

 Score = 253 bits (649),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 90/259 (35%), Positives = 142/259 (55%), Gaps = 11/259 (4%)

Query  461  MVGTPSYNKDLDDQEMVRKEKKLSELVERHGSVEQAVSALAEEELQLLKIQEEAQNADLS  520
            M      +++L+++E  R   K + L E      +    + E  L+L + QE   + DLS
Sbjct  1    MKPDEGLSEELEEEEKERLAAKKASLSE------EEKEKIVERTLELKERQEAPDSEDLS  54

Query  521  CLPSLRVEDISREKERKPVRESKMDDIDVVWREAPTNGLTYFQALNSFEELPDDLRLLLP  580
            CLP+L + DI RE E +P  E  +  + V+  + PTNG+ YF+A+    +LP++L   LP
Sbjct  55   CLPTLTLSDIPREIEVEPEEE--IGGVPVLHHDVPTNGIVYFRAIFDLSDLPEELLPYLP  112

Query  581  LFNDCIMRLGTGDKTMEQWEDLIKLKTGGITTSTLHTSSPTELGKFREGLQFSGYALDNN  640
            LF   +  LGT     E+ E  I LKTGGI+ S   +S P +L K+  G   SG ALD N
Sbjct  113  LFTSVLTELGTKKYDYEELEQEINLKTGGISASPSVSSDPDDLDKYEPGFVVSGKALDRN  172

Query  641  IPDMLQILTTLVTETDFTSPHAPAMIQELLRMTTNGALDAVAGSGHRYALNAAAAGLSRS  700
            +P M  +L  ++ ET F        ++EL++ + +   +++A SGH YA++ AA+ LS +
Sbjct  173  VPKMFDLLREILLETKFDD---KERLKELVQESKSRLENSIASSGHSYAMSRAASYLSPA  229

Query  701  FWVQEQQSGLAQLQATANL  719
              + EQ SGL+Q +   +L
Sbjct  230  GALSEQLSGLSQYKFLKDL  248


>CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.  Peptidase 
M16 consists of two structurally related domains. One 
is the active peptidase, whereas the other is inactive. The 
two domains hold the substrate like a clamp.
Length=181

 Score = 73.6 bits (181),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 36/191 (19%), Positives = 70/191 (37%), Gaps = 13/191 (7%)

Query  204  DLTHQQLVDFSKRNYHPSNAKILTYGDMPLSVHLKQIGEVLDGFEKGQADTDVKLPLDLS  263
             LT + L DF K++Y P N  ++  GD+     L    +                     
Sbjct  1    SLTREDLRDFYKKHYSPDNMVLVIVGDVDHEELLDLAEKYFGDLPA-------SPKGKPR  53

Query  264  RGPLNVTVPGPIDTFASEDKQYKTSTSWY--MGDTTDVVETFSVGILSSLLLDGYGSPMY  321
              PL        +    +  + +   +         +  ++ ++ +L+ LL  G  S ++
Sbjct  54   PPPLEPAKLKGREVVVPKKDEPQAHLALAFPGPPLNNDEDSLALDVLNELLGGGMSSRLF  113

Query  322  RALIE-GGLGSSFTPNTGLDSSGRVPIFSVGLTGVSEADAPKVKSTIKRVFEESLSSGFN  380
            + L E  GL  S   ++  DS     +F +  T   E +  +V   I    E+    G  
Sbjct  114  QELREKEGLAYSV--SSFNDSYSDSGLFGIYATVDPE-NVDEVIELILEELEKLAQEGVT  170

Query  381  DEKVQGFLHQL  391
            +E+++   +QL
Sbjct  171  EEELERAKNQL  181



Lambda      K        H        a         alpha
   0.316    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1284199532


Query= TCONS_00030378

Length=1003
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462447 pfam08367, M16C_assoc, Peptidase M16C associated. This...  253     4e-78
CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive dom...  73.6    2e-15


>CDD:462447 pfam08367, M16C_assoc, Peptidase M16C associated.  This domain 
appears in eukaryotes as well as bacteria and tends to be 
found near the C-terminus of the metalloprotease M16C (pfam05193).
Length=248

 Score = 253 bits (649),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 90/259 (35%), Positives = 142/259 (55%), Gaps = 11/259 (4%)

Query  461  MVGTPSYNKDLDDQEMVRKEKKLSELVERHGSVEQAVSALAEEELQLLKIQEEAQNADLS  520
            M      +++L+++E  R   K + L E      +    + E  L+L + QE   + DLS
Sbjct  1    MKPDEGLSEELEEEEKERLAAKKASLSE------EEKEKIVERTLELKERQEAPDSEDLS  54

Query  521  CLPSLRVEDISREKERKPVRESKMDDIDVVWREAPTNGLTYFQALNSFEELPDDLRLLLP  580
            CLP+L + DI RE E +P  E  +  + V+  + PTNG+ YF+A+    +LP++L   LP
Sbjct  55   CLPTLTLSDIPREIEVEPEEE--IGGVPVLHHDVPTNGIVYFRAIFDLSDLPEELLPYLP  112

Query  581  LFNDCIMRLGTGDKTMEQWEDLIKLKTGGITTSTLHTSSPTELGKFREGLQFSGYALDNN  640
            LF   +  LGT     E+ E  I LKTGGI+ S   +S P +L K+  G   SG ALD N
Sbjct  113  LFTSVLTELGTKKYDYEELEQEINLKTGGISASPSVSSDPDDLDKYEPGFVVSGKALDRN  172

Query  641  IPDMLQILTTLVTETDFTSPHAPAMIQELLRMTTNGALDAVAGSGHRYALNAAAAGLSRS  700
            +P M  +L  ++ ET F        ++EL++ + +   +++A SGH YA++ AA+ LS +
Sbjct  173  VPKMFDLLREILLETKFDD---KERLKELVQESKSRLENSIASSGHSYAMSRAASYLSPA  229

Query  701  FWVQEQQSGLAQLQATANL  719
              + EQ SGL+Q +   +L
Sbjct  230  GALSEQLSGLSQYKFLKDL  248


>CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.  Peptidase 
M16 consists of two structurally related domains. One 
is the active peptidase, whereas the other is inactive. The 
two domains hold the substrate like a clamp.
Length=181

 Score = 73.6 bits (181),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 36/191 (19%), Positives = 70/191 (37%), Gaps = 13/191 (7%)

Query  204  DLTHQQLVDFSKRNYHPSNAKILTYGDMPLSVHLKQIGEVLDGFEKGQADTDVKLPLDLS  263
             LT + L DF K++Y P N  ++  GD+     L    +                     
Sbjct  1    SLTREDLRDFYKKHYSPDNMVLVIVGDVDHEELLDLAEKYFGDLPA-------SPKGKPR  53

Query  264  RGPLNVTVPGPIDTFASEDKQYKTSTSWY--MGDTTDVVETFSVGILSSLLLDGYGSPMY  321
              PL        +    +  + +   +         +  ++ ++ +L+ LL  G  S ++
Sbjct  54   PPPLEPAKLKGREVVVPKKDEPQAHLALAFPGPPLNNDEDSLALDVLNELLGGGMSSRLF  113

Query  322  RALIE-GGLGSSFTPNTGLDSSGRVPIFSVGLTGVSEADAPKVKSTIKRVFEESLSSGFN  380
            + L E  GL  S   ++  DS     +F +  T   E +  +V   I    E+    G  
Sbjct  114  QELREKEGLAYSV--SSFNDSYSDSGLFGIYATVDPE-NVDEVIELILEELEKLAQEGVT  170

Query  381  DEKVQGFLHQL  391
            +E+++   +QL
Sbjct  171  EEELERAKNQL  181



Lambda      K        H        a         alpha
   0.316    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1284199532


Query= TCONS_00034929

Length=1003
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462447 pfam08367, M16C_assoc, Peptidase M16C associated. This...  253     4e-78
CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive dom...  73.6    2e-15


>CDD:462447 pfam08367, M16C_assoc, Peptidase M16C associated.  This domain 
appears in eukaryotes as well as bacteria and tends to be 
found near the C-terminus of the metalloprotease M16C (pfam05193).
Length=248

 Score = 253 bits (649),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 90/259 (35%), Positives = 142/259 (55%), Gaps = 11/259 (4%)

Query  461  MVGTPSYNKDLDDQEMVRKEKKLSELVERHGSVEQAVSALAEEELQLLKIQEEAQNADLS  520
            M      +++L+++E  R   K + L E      +    + E  L+L + QE   + DLS
Sbjct  1    MKPDEGLSEELEEEEKERLAAKKASLSE------EEKEKIVERTLELKERQEAPDSEDLS  54

Query  521  CLPSLRVEDISREKERKPVRESKMDDIDVVWREAPTNGLTYFQALNSFEELPDDLRLLLP  580
            CLP+L + DI RE E +P  E  +  + V+  + PTNG+ YF+A+    +LP++L   LP
Sbjct  55   CLPTLTLSDIPREIEVEPEEE--IGGVPVLHHDVPTNGIVYFRAIFDLSDLPEELLPYLP  112

Query  581  LFNDCIMRLGTGDKTMEQWEDLIKLKTGGITTSTLHTSSPTELGKFREGLQFSGYALDNN  640
            LF   +  LGT     E+ E  I LKTGGI+ S   +S P +L K+  G   SG ALD N
Sbjct  113  LFTSVLTELGTKKYDYEELEQEINLKTGGISASPSVSSDPDDLDKYEPGFVVSGKALDRN  172

Query  641  IPDMLQILTTLVTETDFTSPHAPAMIQELLRMTTNGALDAVAGSGHRYALNAAAAGLSRS  700
            +P M  +L  ++ ET F        ++EL++ + +   +++A SGH YA++ AA+ LS +
Sbjct  173  VPKMFDLLREILLETKFDD---KERLKELVQESKSRLENSIASSGHSYAMSRAASYLSPA  229

Query  701  FWVQEQQSGLAQLQATANL  719
              + EQ SGL+Q +   +L
Sbjct  230  GALSEQLSGLSQYKFLKDL  248


>CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.  Peptidase 
M16 consists of two structurally related domains. One 
is the active peptidase, whereas the other is inactive. The 
two domains hold the substrate like a clamp.
Length=181

 Score = 73.6 bits (181),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 36/191 (19%), Positives = 70/191 (37%), Gaps = 13/191 (7%)

Query  204  DLTHQQLVDFSKRNYHPSNAKILTYGDMPLSVHLKQIGEVLDGFEKGQADTDVKLPLDLS  263
             LT + L DF K++Y P N  ++  GD+     L    +                     
Sbjct  1    SLTREDLRDFYKKHYSPDNMVLVIVGDVDHEELLDLAEKYFGDLPA-------SPKGKPR  53

Query  264  RGPLNVTVPGPIDTFASEDKQYKTSTSWY--MGDTTDVVETFSVGILSSLLLDGYGSPMY  321
              PL        +    +  + +   +         +  ++ ++ +L+ LL  G  S ++
Sbjct  54   PPPLEPAKLKGREVVVPKKDEPQAHLALAFPGPPLNNDEDSLALDVLNELLGGGMSSRLF  113

Query  322  RALIE-GGLGSSFTPNTGLDSSGRVPIFSVGLTGVSEADAPKVKSTIKRVFEESLSSGFN  380
            + L E  GL  S   ++  DS     +F +  T   E +  +V   I    E+    G  
Sbjct  114  QELREKEGLAYSV--SSFNDSYSDSGLFGIYATVDPE-NVDEVIELILEELEKLAQEGVT  170

Query  381  DEKVQGFLHQL  391
            +E+++   +QL
Sbjct  171  EEELERAKNQL  181



Lambda      K        H        a         alpha
   0.316    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1284199532


Query= TCONS_00030374

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367316 pfam03060, NMO, Nitronate monooxygenase. Nitronate mon...  140     2e-39


>CDD:367316 pfam03060, NMO, Nitronate monooxygenase.  Nitronate monooxygenase 
(NMO), formerly referred to as 2-nitropropane dioxygenase 
(NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses 
molecular oxygen to oxidize (anionic) alkyl nitronates and, 
in the case of the enzyme from Neurospora crassa, (neutral) 
nitroalkanes to the corresponding carbonyl compounds and 
nitrite. Previously classified as 2-nitropropane dioxygenase, 
but it is now recognized that this was the result of the slow 
ionization of nitroalkanes to their nitronate (anionic) 
forms. The enzymes from the fungus Neurospora crassa and the 
yeast Williopsis saturnus var. mrakii (formerly classified 
as Hansenula mrakii) contain non-covalently bound FMN as the 
cofactor. Active towards linear alkyl nitronates of lengths 
between 2 and 6 carbon atoms and, with lower activity, towards 
propyl-2-nitronate. The enzyme from N. crassa can also utilize 
neutral nitroalkanes, but with lower activity. One atom 
of oxygen is incorporated into the carbonyl group of the 
aldehyde product. The reaction appears to involve the formation 
of an enzyme-bound nitronate radical and an a-peroxynitroethane 
species, which then decomposes, either in the active 
site of the enzyme or after release, to acetaldehyde and nitrite.
Length=331

 Score = 140 bits (354),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 104/343 (30%), Positives = 150/343 (44%), Gaps = 37/343 (11%)

Query  5    TPLCSLLNIQHPVLLAGMARASGAPLAAAVSNAGGLGTIGGLGYTPQQLSEMLTELKSLL  64
            + L  +  I+ PV    M   S   LAAAVSNAGGLG +     TP +L + + ++K+L 
Sbjct  2    SLLTDIHTIKPPVQQPMMGGISWPRLAAAVSNAGGLGVLASGYLTPDRLYQEIRKVKALT  61

Query  65   RDKSLPFGVDLALPQVGGGARATNHDYTHG------------QLDELIEVVISHGAKLFV  112
             DK  PFG +L LP+      A N+    G                 + V +  G  +  
Sbjct  62   -DK--PFGANLFLPKPDLADPAANYAKILGNNALGYNIEEGVPDYGKVLVDLDEGVNVVS  118

Query  113  SAVGVPPERTIKRLHDAGILVMNMVGAPRHAEKALQRGVDIVCAQGGEG-----GGHTGD  167
               G+PP   + RLH AG+ ++  + + + A  A  RG D +  QG E          GD
Sbjct  119  FGFGLPPNDVVFRLHFAGVALIPTISSAKEARIAEARGADALIVQGPEAGGHQGTPEYGD  178

Query  168  IPFSVLVPAVVDVAKRYKSPMTGQPALVVAAGGINDGRSLAASLMLGASGVWVGTRFVAS  227
                 LVP V D       P       V+AAGGI D R +AA+L LGASGV +GTRF+ +
Sbjct  179  KGLFRLVPQVPDA---VDIP-------VIAAGGIWDRRGVAAALALGASGVQMGTRFLLT  228

Query  228  EESGASRMHKEAVVRARYGETHRTLVVSGRPLRMLPNDYIKDWEKRPQEIADL-----TA  282
            +ESGA   HK+ +  A   +T  T   SGRP R L N ++++ E+               
Sbjct  229  KESGAHDAHKQKITEAGEDDTLVTSPFSGRPARALANGFLEELEEPKIATLAYPEAHEMT  288

Query  283  KGIVPMMHDLENEKEVDMPFLMGDVSASITEIKPAGDIVREMV  325
            K I        N +E       G     +  I    +++  + 
Sbjct  289  KPIRAAAVRGGNREE--GLLWAGQGIYRLDRIISVKELIESLT  329



Lambda      K        H        a         alpha
   0.317    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00034930

Length=140
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462861 pfam09728, Taxilin, Myosin-like coiled-coil protein. T...  82.3    2e-20


>CDD:462861 pfam09728, Taxilin, Myosin-like coiled-coil protein.  Taxilin 
contains an extraordinarily long coiled-coil domain in its 
C-terminal half and is ubiquitously expressed. It is a novel 
binding partner of several syntaxin family members and is possibly 
involved in Ca2+-dependent exocytosis in neuroendocrine 
cells. Gamma-taxilin, described as leucine zipper protein 
Factor Inhibiting ATF4-mediated Transcription (FIAT), localizes 
to the nucleus in osteoblasts and dimerizes with ATF4 
to form inactive dimers, thus inhibiting ATF4-mediated transcription.
Length=302

 Score = 82.3 bits (204),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 48/87 (55%), Positives = 66/87 (76%), Gaps = 0/87 (0%)

Query  52   KATRDLNQLLSNIESPMTRLETVHKKYTELLADMKKLDRDYAKSKKRADQLQKDQDKGKS  111
            KA R+L QLL+ ++SP  +L  + KKY ELL +MK+L +D  K KK+ DQLQK++D+ +S
Sbjct  1    KAARELMQLLNKLDSPEEKLAALCKKYAELLEEMKRLQKDLKKLKKKQDQLQKEKDQLQS  60

Query  112  ELNKTVTMKDKLEKLCRELTKENKKVK  138
            EL+K +  K KLEKLCREL K+NKK+K
Sbjct  61   ELSKAILAKSKLEKLCRELQKQNKKLK  87



Lambda      K        H        a         alpha
   0.303    0.120    0.302    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00030376

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367316 pfam03060, NMO, Nitronate monooxygenase. Nitronate mon...  140     2e-39


>CDD:367316 pfam03060, NMO, Nitronate monooxygenase.  Nitronate monooxygenase 
(NMO), formerly referred to as 2-nitropropane dioxygenase 
(NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses 
molecular oxygen to oxidize (anionic) alkyl nitronates and, 
in the case of the enzyme from Neurospora crassa, (neutral) 
nitroalkanes to the corresponding carbonyl compounds and 
nitrite. Previously classified as 2-nitropropane dioxygenase, 
but it is now recognized that this was the result of the slow 
ionization of nitroalkanes to their nitronate (anionic) 
forms. The enzymes from the fungus Neurospora crassa and the 
yeast Williopsis saturnus var. mrakii (formerly classified 
as Hansenula mrakii) contain non-covalently bound FMN as the 
cofactor. Active towards linear alkyl nitronates of lengths 
between 2 and 6 carbon atoms and, with lower activity, towards 
propyl-2-nitronate. The enzyme from N. crassa can also utilize 
neutral nitroalkanes, but with lower activity. One atom 
of oxygen is incorporated into the carbonyl group of the 
aldehyde product. The reaction appears to involve the formation 
of an enzyme-bound nitronate radical and an a-peroxynitroethane 
species, which then decomposes, either in the active 
site of the enzyme or after release, to acetaldehyde and nitrite.
Length=331

 Score = 140 bits (354),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 104/343 (30%), Positives = 150/343 (44%), Gaps = 37/343 (11%)

Query  5    TPLCSLLNIQHPVLLAGMARASGAPLAAAVSNAGGLGTIGGLGYTPQQLSEMLTELKSLL  64
            + L  +  I+ PV    M   S   LAAAVSNAGGLG +     TP +L + + ++K+L 
Sbjct  2    SLLTDIHTIKPPVQQPMMGGISWPRLAAAVSNAGGLGVLASGYLTPDRLYQEIRKVKALT  61

Query  65   RDKSLPFGVDLALPQVGGGARATNHDYTHG------------QLDELIEVVISHGAKLFV  112
             DK  PFG +L LP+      A N+    G                 + V +  G  +  
Sbjct  62   -DK--PFGANLFLPKPDLADPAANYAKILGNNALGYNIEEGVPDYGKVLVDLDEGVNVVS  118

Query  113  SAVGVPPERTIKRLHDAGILVMNMVGAPRHAEKALQRGVDIVCAQGGEG-----GGHTGD  167
               G+PP   + RLH AG+ ++  + + + A  A  RG D +  QG E          GD
Sbjct  119  FGFGLPPNDVVFRLHFAGVALIPTISSAKEARIAEARGADALIVQGPEAGGHQGTPEYGD  178

Query  168  IPFSVLVPAVVDVAKRYKSPMTGQPALVVAAGGINDGRSLAASLMLGASGVWVGTRFVAS  227
                 LVP V D       P       V+AAGGI D R +AA+L LGASGV +GTRF+ +
Sbjct  179  KGLFRLVPQVPDA---VDIP-------VIAAGGIWDRRGVAAALALGASGVQMGTRFLLT  228

Query  228  EESGASRMHKEAVVRARYGETHRTLVVSGRPLRMLPNDYIKDWEKRPQEIADL-----TA  282
            +ESGA   HK+ +  A   +T  T   SGRP R L N ++++ E+               
Sbjct  229  KESGAHDAHKQKITEAGEDDTLVTSPFSGRPARALANGFLEELEEPKIATLAYPEAHEMT  288

Query  283  KGIVPMMHDLENEKEVDMPFLMGDVSASITEIKPAGDIVREMV  325
            K I        N +E       G     +  I    +++  + 
Sbjct  289  KPIRAAAVRGGNREE--GLLWAGQGIYRLDRIISVKELIESLT  329



Lambda      K        H        a         alpha
   0.317    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00030375

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367316 pfam03060, NMO, Nitronate monooxygenase. Nitronate mon...  140     2e-39


>CDD:367316 pfam03060, NMO, Nitronate monooxygenase.  Nitronate monooxygenase 
(NMO), formerly referred to as 2-nitropropane dioxygenase 
(NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses 
molecular oxygen to oxidize (anionic) alkyl nitronates and, 
in the case of the enzyme from Neurospora crassa, (neutral) 
nitroalkanes to the corresponding carbonyl compounds and 
nitrite. Previously classified as 2-nitropropane dioxygenase, 
but it is now recognized that this was the result of the slow 
ionization of nitroalkanes to their nitronate (anionic) 
forms. The enzymes from the fungus Neurospora crassa and the 
yeast Williopsis saturnus var. mrakii (formerly classified 
as Hansenula mrakii) contain non-covalently bound FMN as the 
cofactor. Active towards linear alkyl nitronates of lengths 
between 2 and 6 carbon atoms and, with lower activity, towards 
propyl-2-nitronate. The enzyme from N. crassa can also utilize 
neutral nitroalkanes, but with lower activity. One atom 
of oxygen is incorporated into the carbonyl group of the 
aldehyde product. The reaction appears to involve the formation 
of an enzyme-bound nitronate radical and an a-peroxynitroethane 
species, which then decomposes, either in the active 
site of the enzyme or after release, to acetaldehyde and nitrite.
Length=331

 Score = 140 bits (354),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 104/343 (30%), Positives = 150/343 (44%), Gaps = 37/343 (11%)

Query  5    TPLCSLLNIQHPVLLAGMARASGAPLAAAVSNAGGLGTIGGLGYTPQQLSEMLTELKSLL  64
            + L  +  I+ PV    M   S   LAAAVSNAGGLG +     TP +L + + ++K+L 
Sbjct  2    SLLTDIHTIKPPVQQPMMGGISWPRLAAAVSNAGGLGVLASGYLTPDRLYQEIRKVKALT  61

Query  65   RDKSLPFGVDLALPQVGGGARATNHDYTHG------------QLDELIEVVISHGAKLFV  112
             DK  PFG +L LP+      A N+    G                 + V +  G  +  
Sbjct  62   -DK--PFGANLFLPKPDLADPAANYAKILGNNALGYNIEEGVPDYGKVLVDLDEGVNVVS  118

Query  113  SAVGVPPERTIKRLHDAGILVMNMVGAPRHAEKALQRGVDIVCAQGGEG-----GGHTGD  167
               G+PP   + RLH AG+ ++  + + + A  A  RG D +  QG E          GD
Sbjct  119  FGFGLPPNDVVFRLHFAGVALIPTISSAKEARIAEARGADALIVQGPEAGGHQGTPEYGD  178

Query  168  IPFSVLVPAVVDVAKRYKSPMTGQPALVVAAGGINDGRSLAASLMLGASGVWVGTRFVAS  227
                 LVP V D       P       V+AAGGI D R +AA+L LGASGV +GTRF+ +
Sbjct  179  KGLFRLVPQVPDA---VDIP-------VIAAGGIWDRRGVAAALALGASGVQMGTRFLLT  228

Query  228  EESGASRMHKEAVVRARYGETHRTLVVSGRPLRMLPNDYIKDWEKRPQEIADL-----TA  282
            +ESGA   HK+ +  A   +T  T   SGRP R L N ++++ E+               
Sbjct  229  KESGAHDAHKQKITEAGEDDTLVTSPFSGRPARALANGFLEELEEPKIATLAYPEAHEMT  288

Query  283  KGIVPMMHDLENEKEVDMPFLMGDVSASITEIKPAGDIVREMV  325
            K I        N +E       G     +  I    +++  + 
Sbjct  289  KPIRAAAVRGGNREE--GLLWAGQGIYRLDRIISVKELIESLT  329



Lambda      K        H        a         alpha
   0.317    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00030377

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367316 pfam03060, NMO, Nitronate monooxygenase. Nitronate mon...  140     2e-39


>CDD:367316 pfam03060, NMO, Nitronate monooxygenase.  Nitronate monooxygenase 
(NMO), formerly referred to as 2-nitropropane dioxygenase 
(NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses 
molecular oxygen to oxidize (anionic) alkyl nitronates and, 
in the case of the enzyme from Neurospora crassa, (neutral) 
nitroalkanes to the corresponding carbonyl compounds and 
nitrite. Previously classified as 2-nitropropane dioxygenase, 
but it is now recognized that this was the result of the slow 
ionization of nitroalkanes to their nitronate (anionic) 
forms. The enzymes from the fungus Neurospora crassa and the 
yeast Williopsis saturnus var. mrakii (formerly classified 
as Hansenula mrakii) contain non-covalently bound FMN as the 
cofactor. Active towards linear alkyl nitronates of lengths 
between 2 and 6 carbon atoms and, with lower activity, towards 
propyl-2-nitronate. The enzyme from N. crassa can also utilize 
neutral nitroalkanes, but with lower activity. One atom 
of oxygen is incorporated into the carbonyl group of the 
aldehyde product. The reaction appears to involve the formation 
of an enzyme-bound nitronate radical and an a-peroxynitroethane 
species, which then decomposes, either in the active 
site of the enzyme or after release, to acetaldehyde and nitrite.
Length=331

 Score = 140 bits (354),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 104/343 (30%), Positives = 150/343 (44%), Gaps = 37/343 (11%)

Query  5    TPLCSLLNIQHPVLLAGMARASGAPLAAAVSNAGGLGTIGGLGYTPQQLSEMLTELKSLL  64
            + L  +  I+ PV    M   S   LAAAVSNAGGLG +     TP +L + + ++K+L 
Sbjct  2    SLLTDIHTIKPPVQQPMMGGISWPRLAAAVSNAGGLGVLASGYLTPDRLYQEIRKVKALT  61

Query  65   RDKSLPFGVDLALPQVGGGARATNHDYTHG------------QLDELIEVVISHGAKLFV  112
             DK  PFG +L LP+      A N+    G                 + V +  G  +  
Sbjct  62   -DK--PFGANLFLPKPDLADPAANYAKILGNNALGYNIEEGVPDYGKVLVDLDEGVNVVS  118

Query  113  SAVGVPPERTIKRLHDAGILVMNMVGAPRHAEKALQRGVDIVCAQGGEG-----GGHTGD  167
               G+PP   + RLH AG+ ++  + + + A  A  RG D +  QG E          GD
Sbjct  119  FGFGLPPNDVVFRLHFAGVALIPTISSAKEARIAEARGADALIVQGPEAGGHQGTPEYGD  178

Query  168  IPFSVLVPAVVDVAKRYKSPMTGQPALVVAAGGINDGRSLAASLMLGASGVWVGTRFVAS  227
                 LVP V D       P       V+AAGGI D R +AA+L LGASGV +GTRF+ +
Sbjct  179  KGLFRLVPQVPDA---VDIP-------VIAAGGIWDRRGVAAALALGASGVQMGTRFLLT  228

Query  228  EESGASRMHKEAVVRARYGETHRTLVVSGRPLRMLPNDYIKDWEKRPQEIADL-----TA  282
            +ESGA   HK+ +  A   +T  T   SGRP R L N ++++ E+               
Sbjct  229  KESGAHDAHKQKITEAGEDDTLVTSPFSGRPARALANGFLEELEEPKIATLAYPEAHEMT  288

Query  283  KGIVPMMHDLENEKEVDMPFLMGDVSASITEIKPAGDIVREMV  325
            K I        N +E       G     +  I    +++  + 
Sbjct  289  KPIRAAAVRGGNREE--GLLWAGQGIYRLDRIISVKELIESLT  329



Lambda      K        H        a         alpha
   0.317    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00030379

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462861 pfam09728, Taxilin, Myosin-like coiled-coil protein. T...  272     1e-90


>CDD:462861 pfam09728, Taxilin, Myosin-like coiled-coil protein.  Taxilin 
contains an extraordinarily long coiled-coil domain in its 
C-terminal half and is ubiquitously expressed. It is a novel 
binding partner of several syntaxin family members and is possibly 
involved in Ca2+-dependent exocytosis in neuroendocrine 
cells. Gamma-taxilin, described as leucine zipper protein 
Factor Inhibiting ATF4-mediated Transcription (FIAT), localizes 
to the nucleus in osteoblasts and dimerizes with ATF4 
to form inactive dimers, thus inhibiting ATF4-mediated transcription.
Length=302

 Score = 272 bits (698),  Expect = 1e-90, Method: Composition-based stats.
 Identities = 147/291 (51%), Positives = 208/291 (71%), Gaps = 12/291 (4%)

Query  3    RLETVHKKYTELLADMKKLDRDYAKSKKRADQLQKDQDKGKSELNKTVTMKDKLEKLCRE  62
            +L  + KKY ELL +MK+L +D  K KK+ DQLQK++D+ +SEL+K +  K KLEKLCRE
Sbjct  19   KLAALCKKYAELLEEMKRLQKDLKKLKKKQDQLQKEKDQLQSELSKAILAKSKLEKLCRE  78

Query  63   LTKENKKVKAHVRQDENKKLEETEKKARLIVNERLDSLLYDIQDVMAAKGNPRNEKLDID  122
            L K+NKK+K     +E+KKL + E++ R  ++E+  S L DIQD M  K    N+  + +
Sbjct  79   LQKQNKKLK-----EESKKLAKEEEEKRKELSEKFQSTLKDIQDKMEEKSEKNNKLREEN  133

Query  123  LDEALRAKIKTIGEKFEMRELHYKALLRSKDAEIQCLTAKY-----EEQRRAAENEAARC  177
             +  LR K+K++ E++E+RELH++ LL++K+ E+Q   AK      EE+++A E E A+ 
Sbjct  134  EE--LREKLKSLIEQYELRELHFEKLLKTKELEVQLAEAKLQQATEEEEKKAQEKEVAKA  191

Query  178  RALSSQVSTFSHTEAELRSQLNIYVEKFKQVEDTLNNSNELFLTFRKEMEEMSKKTKRLE  237
            R L +QV T S TE ELR QLN+YVEKF++ +DTLN SNE+F TF+KEME+MSKK K+LE
Sbjct  192  RELKAQVQTLSETEKELREQLNLYVEKFEEFQDTLNKSNEVFTTFKKEMEKMSKKIKKLE  251

Query  238  KENLTLTRKHDQTNRNILEMAEERTRNHEELEKWRKKSQHLEALCRRMQAQ  288
            KENLT  RK +++N+ +LEMAEER +  EELEK +KK + LE LCR +QA+
Sbjct  252  KENLTWKRKWEKSNKALLEMAEERQKLKEELEKLQKKLEKLENLCRALQAE  302



Lambda      K        H        a         alpha
   0.309    0.127    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00034931

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit O...  168     1e-51
CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon s...  137     7e-39


>CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit OB-fold 
domain.  The eukaryotic DNA polymerase delta (Pol delta) participates 
in genome replication, homologous recombination, DNA 
repair and damage tolerance. Human Pol delta consists of 
four subunits: p125, p50, p66 and p12. The first three subunits 
correspond to the three subunits of S. cerevisiae Pol delta. 
p50 serves as a scaffold for the assembly of Pol delta 
by interacting simultaneously with all of the other three subunits. 
This entry corresponds to the OB fold domain found in 
the p50 subunit.
Length=129

 Score = 168 bits (428),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 57/140 (41%), Positives = 80/140 (57%), Gaps = 11/140 (8%)

Query  48   QYGDMYFLRLARLKPVVEEVGTDAWEGFSIAGERARRVERVLDVRQGELCWVAGTVYMDM  107
            QY  +YF RL  L+P + E     W            V ++LD+++GE C + GT+Y +M
Sbjct  1    QYAHIYFARLEALRPRLLEAAKKKWGDVIP-------VNKILDLKEGEECIIIGTLYKEM  53

Query  108  PLKPNILDDLSRESHTLAPPPRRTYQDPAHPELTQIMLEDESGRLRLTGSLLTSTQLATG  167
             LKP+ILD+ S E+     PPR  Y         ++ LEDESGR++L G  +   +L TG
Sbjct  54   KLKPSILDEYSEENQLAPQPPRTKYTSDD----DELFLEDESGRIKLIGDKIDVDELVTG  109

Query  168  VIIAVLGTENANGDFETIDI  187
            V++AVLG EN +GDFE  DI
Sbjct  110  VVVAVLGRENEDGDFEVEDI  129


>CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon subunit 
B.  This family contains a number of DNA polymerase subunits. 
The B subunit of the DNA polymerase alpha plays an essential 
role at the initial stage of DNA replication in S. cerevisiae 
and is phosphorylated in a cell cycle-dependent manner. 
DNA polymerase epsilon is essential for cell viability and 
chromosomal DNA replication in budding yeast. In addition, DNA 
polymerase epsilon may be involved in DNA repair and cell-cycle 
checkpoint control. The enzyme consists of at least four 
subunits in mammalian cells as well as in yeast. The largest 
subunit of DNA polymerase epsilon is responsible for polymerase 
epsilon is responsible for polymerase activity. In 
mouse, the DNA polymerase epsilon subunit B is the second largest 
subunit of the DNA polymerase. A part of the N-terminal 
was found to be responsible for the interaction with SAP18. 
Experimental evidence suggests that this subunit may recruit 
histone deacetylase to the replication fork to modify the 
chromatin structure.
Length=210

 Score = 137 bits (348),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 94/220 (43%), Gaps = 42/220 (19%)

Query  216  IAFVSGLGITGTSSDTLALELLADYLLGYTGSDASSITRLIIAGNSLGANVTAEAAATDM  275
            I F SGL      SD L+LE L D L GY  ++ S   RLI+AG  L +     A+    
Sbjct  1    IVFASGLY---LDSDNLSLEALRDLLDGY--NEDSPPDRLILAGPFLDSKHNLIASG---  52

Query  276  EMGTAAKKKTGPRKYGYDASAYNASPITQLDNFLAEILPSIPVTLMPGESDPANF-ALPQ  334
                             D   YN   +  L + L ++L   PV L+PG +DPAN   LPQ
Sbjct  53   -------------AVAGDTLTYNFLFLKLLLSILEQLLEKTPVILVPGPNDPANSTVLPQ  99

Query  335  QGIHRAMFPRSRAYCAPPPPGDEAPEPGWFDSVTNPWEGDVEGWRLWGSSGQNVDDVLRY  394
                R + PR +                    VTNP    + G  +  +SG NV D+LRY
Sbjct  100  PPFPRCLLPRIKKNN-------------SLIFVTNPCRFSINGVEVVVTSGDNVSDLLRY  146

Query  395  LDFADRDAPDAGDGDIEARMRIMEAMLRWRCGAPTAPDTI  434
                          D++  +R++E +LR R  AP APDT+
Sbjct  147  ELKFSSS-------DVDRFLRLVETILRQRHLAPLAPDTL  179



Lambda      K        H        a         alpha
   0.317    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00030380

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit O...  91.1    3e-25


>CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit OB-fold 
domain.  The eukaryotic DNA polymerase delta (Pol delta) participates 
in genome replication, homologous recombination, DNA 
repair and damage tolerance. Human Pol delta consists of 
four subunits: p125, p50, p66 and p12. The first three subunits 
correspond to the three subunits of S. cerevisiae Pol delta. 
p50 serves as a scaffold for the assembly of Pol delta 
by interacting simultaneously with all of the other three subunits. 
This entry corresponds to the OB fold domain found in 
the p50 subunit.
Length=129

 Score = 91.1 bits (227),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 7/88 (8%)

Query  48   QYGDMYFLRLARLKPVVEEVGTDAWEGFSIAGERARRVERVLDVRQGELCWVAGTVYMDM  107
            QY  +YF RL  L+P + E     W            V ++LD+++GE C + GT+Y +M
Sbjct  1    QYAHIYFARLEALRPRLLEAAKKKWGDVIP-------VNKILDLKEGEECIIIGTLYKEM  53

Query  108  PLKPNILDDLSREVRTPHSFLQASLTSP  135
             LKP+ILD+ S E +      +   TS 
Sbjct  54   KLKPSILDEYSEENQLAPQPPRTKYTSD  81



Lambda      K        H        a         alpha
   0.320    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00034932

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit O...  168     2e-51
CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon s...  137     9e-39


>CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit OB-fold 
domain.  The eukaryotic DNA polymerase delta (Pol delta) participates 
in genome replication, homologous recombination, DNA 
repair and damage tolerance. Human Pol delta consists of 
four subunits: p125, p50, p66 and p12. The first three subunits 
correspond to the three subunits of S. cerevisiae Pol delta. 
p50 serves as a scaffold for the assembly of Pol delta 
by interacting simultaneously with all of the other three subunits. 
This entry corresponds to the OB fold domain found in 
the p50 subunit.
Length=129

 Score = 168 bits (428),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 57/140 (41%), Positives = 80/140 (57%), Gaps = 11/140 (8%)

Query  70   QYGDMYFLRLARLKPVVEEVGTDAWEGFSIAGERARRVERVLDVRQGELCWVAGTVYMDM  129
            QY  +YF RL  L+P + E     W            V ++LD+++GE C + GT+Y +M
Sbjct  1    QYAHIYFARLEALRPRLLEAAKKKWGDVIP-------VNKILDLKEGEECIIIGTLYKEM  53

Query  130  PLKPNILDDLSRESHTLAPPPRRTYQDPAHPELTQIMLEDESGRLRLTGSLLTSTQLATG  189
             LKP+ILD+ S E+     PPR  Y         ++ LEDESGR++L G  +   +L TG
Sbjct  54   KLKPSILDEYSEENQLAPQPPRTKYTSDD----DELFLEDESGRIKLIGDKIDVDELVTG  109

Query  190  VIIAVLGTENANGDFETIDI  209
            V++AVLG EN +GDFE  DI
Sbjct  110  VVVAVLGRENEDGDFEVEDI  129


>CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon subunit 
B.  This family contains a number of DNA polymerase subunits. 
The B subunit of the DNA polymerase alpha plays an essential 
role at the initial stage of DNA replication in S. cerevisiae 
and is phosphorylated in a cell cycle-dependent manner. 
DNA polymerase epsilon is essential for cell viability and 
chromosomal DNA replication in budding yeast. In addition, DNA 
polymerase epsilon may be involved in DNA repair and cell-cycle 
checkpoint control. The enzyme consists of at least four 
subunits in mammalian cells as well as in yeast. The largest 
subunit of DNA polymerase epsilon is responsible for polymerase 
epsilon is responsible for polymerase activity. In 
mouse, the DNA polymerase epsilon subunit B is the second largest 
subunit of the DNA polymerase. A part of the N-terminal 
was found to be responsible for the interaction with SAP18. 
Experimental evidence suggests that this subunit may recruit 
histone deacetylase to the replication fork to modify the 
chromatin structure.
Length=210

 Score = 137 bits (348),  Expect = 9e-39, Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 94/220 (43%), Gaps = 42/220 (19%)

Query  238  IAFVSGLGITGTSSDTLALELLADYLLGYTGSDASSITRLIIAGNSLGANVTAEAAATDM  297
            I F SGL      SD L+LE L D L GY  ++ S   RLI+AG  L +     A+    
Sbjct  1    IVFASGLY---LDSDNLSLEALRDLLDGY--NEDSPPDRLILAGPFLDSKHNLIASG---  52

Query  298  EMGTAAKKKTGPRKYGYDASAYNASPITQLDNFLAEILPSIPVTLMPGESDPANF-ALPQ  356
                             D   YN   +  L + L ++L   PV L+PG +DPAN   LPQ
Sbjct  53   -------------AVAGDTLTYNFLFLKLLLSILEQLLEKTPVILVPGPNDPANSTVLPQ  99

Query  357  QGIHRAMFPRSRAYCAPPPPGDEAPEPGWFDSVTNPWEGDVEGWRLWGSSGQNVDDVLRY  416
                R + PR +                    VTNP    + G  +  +SG NV D+LRY
Sbjct  100  PPFPRCLLPRIKKNN-------------SLIFVTNPCRFSINGVEVVVTSGDNVSDLLRY  146

Query  417  LDFADRDAPDAGDGDIEARMRIMEAMLRWRCGAPTAPDTI  456
                          D++  +R++E +LR R  AP APDT+
Sbjct  147  ELKFSSS-------DVDRFLRLVETILRQRHLAPLAPDTL  179



Lambda      K        H        a         alpha
   0.318    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00030381

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit O...  168     1e-50
CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon s...  171     1e-50


>CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit OB-fold 
domain.  The eukaryotic DNA polymerase delta (Pol delta) participates 
in genome replication, homologous recombination, DNA 
repair and damage tolerance. Human Pol delta consists of 
four subunits: p125, p50, p66 and p12. The first three subunits 
correspond to the three subunits of S. cerevisiae Pol delta. 
p50 serves as a scaffold for the assembly of Pol delta 
by interacting simultaneously with all of the other three subunits. 
This entry corresponds to the OB fold domain found in 
the p50 subunit.
Length=129

 Score = 168 bits (428),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 57/140 (41%), Positives = 80/140 (57%), Gaps = 11/140 (8%)

Query  70   QYGDMYFLRLARLKPVVEEVGTDAWEGFSIAGERARRVERVLDVRQGELCWVAGTVYMDM  129
            QY  +YF RL  L+P + E     W            V ++LD+++GE C + GT+Y +M
Sbjct  1    QYAHIYFARLEALRPRLLEAAKKKWGDVIP-------VNKILDLKEGEECIIIGTLYKEM  53

Query  130  PLKPNILDDLSRESHTLAPPPRRTYQDPAHPELTQIMLEDESGRLRLTGSLLTSTQLATG  189
             LKP+ILD+ S E+     PPR  Y         ++ LEDESGR++L G  +   +L TG
Sbjct  54   KLKPSILDEYSEENQLAPQPPRTKYTSDD----DELFLEDESGRIKLIGDKIDVDELVTG  109

Query  190  VIIAVLGTENANGDFETIDI  209
            V++AVLG EN +GDFE  DI
Sbjct  110  VVVAVLGRENEDGDFEVEDI  129


>CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon subunit 
B.  This family contains a number of DNA polymerase subunits. 
The B subunit of the DNA polymerase alpha plays an essential 
role at the initial stage of DNA replication in S. cerevisiae 
and is phosphorylated in a cell cycle-dependent manner. 
DNA polymerase epsilon is essential for cell viability and 
chromosomal DNA replication in budding yeast. In addition, DNA 
polymerase epsilon may be involved in DNA repair and cell-cycle 
checkpoint control. The enzyme consists of at least four 
subunits in mammalian cells as well as in yeast. The largest 
subunit of DNA polymerase epsilon is responsible for polymerase 
epsilon is responsible for polymerase activity. In 
mouse, the DNA polymerase epsilon subunit B is the second largest 
subunit of the DNA polymerase. A part of the N-terminal 
was found to be responsible for the interaction with SAP18. 
Experimental evidence suggests that this subunit may recruit 
histone deacetylase to the replication fork to modify the 
chromatin structure.
Length=210

 Score = 171 bits (435),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 108/249 (43%), Gaps = 43/249 (17%)

Query  238  IAFVSGLGITGTSSDTLALELLADYLLGYTGSDASSITRLIIAGNSLGANVTAEAAATDM  297
            I F SGL      SD L+LE L D L GY  ++ S   RLI+AG  L +     A+    
Sbjct  1    IVFASGLY---LDSDNLSLEALRDLLDGY--NEDSPPDRLILAGPFLDSKHNLIASG---  52

Query  298  EMGTAAKKKTGPRKYGYDASAYNASPITQLDNFLAEILPSIPVTLMPGESDPANF-ALPQ  356
                             D   YN   +  L + L ++L   PV L+PG +DPAN   LPQ
Sbjct  53   -------------AVAGDTLTYNFLFLKLLLSILEQLLEKTPVILVPGPNDPANSTVLPQ  99

Query  357  QGIHRAMFPRSRAYCAPPPPGDEAPEPGWFDSVTNPWEGDVEGWRLWGSSGQNVDDVLRY  416
                R + PR +                    VTNP    + G  +  +SG NV D+LRY
Sbjct  100  PPFPRCLLPRIKKNN-------------SLIFVTNPCRFSINGVEVVVTSGDNVSDLLRY  146

Query  417  LDFADRDAPDAGDGDIEARMRIMEAMLRWRCGAPTAPDTIWSYPFQTNDPFVMQSCPHIF  476
                          D++  +R++E +LR R  AP APDT+  YP+  +D FV+   P + 
Sbjct  147  ELKFSSS-------DVDRFLRLVETILRQRHLAPLAPDTLRPYPYDKDDAFVLYPLPDVL  199

Query  477  FAGN-QPRF  484
              G+  P F
Sbjct  200  ILGSELPSF  208



Lambda      K        H        a         alpha
   0.317    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690425736


Query= TCONS_00030382

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit O...  168     1e-50
CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon s...  171     1e-50


>CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit OB-fold 
domain.  The eukaryotic DNA polymerase delta (Pol delta) participates 
in genome replication, homologous recombination, DNA 
repair and damage tolerance. Human Pol delta consists of 
four subunits: p125, p50, p66 and p12. The first three subunits 
correspond to the three subunits of S. cerevisiae Pol delta. 
p50 serves as a scaffold for the assembly of Pol delta 
by interacting simultaneously with all of the other three subunits. 
This entry corresponds to the OB fold domain found in 
the p50 subunit.
Length=129

 Score = 168 bits (428),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 57/140 (41%), Positives = 80/140 (57%), Gaps = 11/140 (8%)

Query  70   QYGDMYFLRLARLKPVVEEVGTDAWEGFSIAGERARRVERVLDVRQGELCWVAGTVYMDM  129
            QY  +YF RL  L+P + E     W            V ++LD+++GE C + GT+Y +M
Sbjct  1    QYAHIYFARLEALRPRLLEAAKKKWGDVIP-------VNKILDLKEGEECIIIGTLYKEM  53

Query  130  PLKPNILDDLSRESHTLAPPPRRTYQDPAHPELTQIMLEDESGRLRLTGSLLTSTQLATG  189
             LKP+ILD+ S E+     PPR  Y         ++ LEDESGR++L G  +   +L TG
Sbjct  54   KLKPSILDEYSEENQLAPQPPRTKYTSDD----DELFLEDESGRIKLIGDKIDVDELVTG  109

Query  190  VIIAVLGTENANGDFETIDI  209
            V++AVLG EN +GDFE  DI
Sbjct  110  VVVAVLGRENEDGDFEVEDI  129


>CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon subunit 
B.  This family contains a number of DNA polymerase subunits. 
The B subunit of the DNA polymerase alpha plays an essential 
role at the initial stage of DNA replication in S. cerevisiae 
and is phosphorylated in a cell cycle-dependent manner. 
DNA polymerase epsilon is essential for cell viability and 
chromosomal DNA replication in budding yeast. In addition, DNA 
polymerase epsilon may be involved in DNA repair and cell-cycle 
checkpoint control. The enzyme consists of at least four 
subunits in mammalian cells as well as in yeast. The largest 
subunit of DNA polymerase epsilon is responsible for polymerase 
epsilon is responsible for polymerase activity. In 
mouse, the DNA polymerase epsilon subunit B is the second largest 
subunit of the DNA polymerase. A part of the N-terminal 
was found to be responsible for the interaction with SAP18. 
Experimental evidence suggests that this subunit may recruit 
histone deacetylase to the replication fork to modify the 
chromatin structure.
Length=210

 Score = 171 bits (435),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 108/249 (43%), Gaps = 43/249 (17%)

Query  238  IAFVSGLGITGTSSDTLALELLADYLLGYTGSDASSITRLIIAGNSLGANVTAEAAATDM  297
            I F SGL      SD L+LE L D L GY  ++ S   RLI+AG  L +     A+    
Sbjct  1    IVFASGLY---LDSDNLSLEALRDLLDGY--NEDSPPDRLILAGPFLDSKHNLIASG---  52

Query  298  EMGTAAKKKTGPRKYGYDASAYNASPITQLDNFLAEILPSIPVTLMPGESDPANF-ALPQ  356
                             D   YN   +  L + L ++L   PV L+PG +DPAN   LPQ
Sbjct  53   -------------AVAGDTLTYNFLFLKLLLSILEQLLEKTPVILVPGPNDPANSTVLPQ  99

Query  357  QGIHRAMFPRSRAYCAPPPPGDEAPEPGWFDSVTNPWEGDVEGWRLWGSSGQNVDDVLRY  416
                R + PR +                    VTNP    + G  +  +SG NV D+LRY
Sbjct  100  PPFPRCLLPRIKKNN-------------SLIFVTNPCRFSINGVEVVVTSGDNVSDLLRY  146

Query  417  LDFADRDAPDAGDGDIEARMRIMEAMLRWRCGAPTAPDTIWSYPFQTNDPFVMQSCPHIF  476
                          D++  +R++E +LR R  AP APDT+  YP+  +D FV+   P + 
Sbjct  147  ELKFSSS-------DVDRFLRLVETILRQRHLAPLAPDTLRPYPYDKDDAFVLYPLPDVL  199

Query  477  FAGN-QPRF  484
              G+  P F
Sbjct  200  ILGSELPSF  208



Lambda      K        H        a         alpha
   0.317    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690425736


Query= TCONS_00034933

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon s...  172     8e-53
CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit O...  73.8    1e-16


>CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon subunit 
B.  This family contains a number of DNA polymerase subunits. 
The B subunit of the DNA polymerase alpha plays an essential 
role at the initial stage of DNA replication in S. cerevisiae 
and is phosphorylated in a cell cycle-dependent manner. 
DNA polymerase epsilon is essential for cell viability and 
chromosomal DNA replication in budding yeast. In addition, DNA 
polymerase epsilon may be involved in DNA repair and cell-cycle 
checkpoint control. The enzyme consists of at least four 
subunits in mammalian cells as well as in yeast. The largest 
subunit of DNA polymerase epsilon is responsible for polymerase 
epsilon is responsible for polymerase activity. In 
mouse, the DNA polymerase epsilon subunit B is the second largest 
subunit of the DNA polymerase. A part of the N-terminal 
was found to be responsible for the interaction with SAP18. 
Experimental evidence suggests that this subunit may recruit 
histone deacetylase to the replication fork to modify the 
chromatin structure.
Length=210

 Score = 172 bits (439),  Expect = 8e-53, Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 108/249 (43%), Gaps = 43/249 (17%)

Query  73   IAFVSGLGITGTSSDTLALELLADYLLGYTGSDASSITRLIIAGNSLGANVTAEAAATDM  132
            I F SGL      SD L+LE L D L GY  ++ S   RLI+AG  L +     A+    
Sbjct  1    IVFASGLY---LDSDNLSLEALRDLLDGY--NEDSPPDRLILAGPFLDSKHNLIASG---  52

Query  133  EMGTAAKKKTGPRKYGYDASAYNASPITQLDNFLAEILPSIPVTLMPGESDPANF-ALPQ  191
                             D   YN   +  L + L ++L   PV L+PG +DPAN   LPQ
Sbjct  53   -------------AVAGDTLTYNFLFLKLLLSILEQLLEKTPVILVPGPNDPANSTVLPQ  99

Query  192  QGIHRAMFPRSRAYCAPPPPGDEAPEPGWFDSVTNPWEGDVEGWRLWGSSGQNVDDVLRY  251
                R + PR +                    VTNP    + G  +  +SG NV D+LRY
Sbjct  100  PPFPRCLLPRIKKNN-------------SLIFVTNPCRFSINGVEVVVTSGDNVSDLLRY  146

Query  252  LDFADRDAPDAGDGDIEARMRIMEAMLRWRCGAPTAPDTIWSYPFQTNDPFVMQSCPHIF  311
                          D++  +R++E +LR R  AP APDT+  YP+  +D FV+   P + 
Sbjct  147  ELKFSSS-------DVDRFLRLVETILRQRHLAPLAPDTLRPYPYDKDDAFVLYPLPDVL  199

Query  312  FAGN-QPRF  319
              G+  P F
Sbjct  200  ILGSELPSF  208


>CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit OB-fold 
domain.  The eukaryotic DNA polymerase delta (Pol delta) participates 
in genome replication, homologous recombination, DNA 
repair and damage tolerance. Human Pol delta consists of 
four subunits: p125, p50, p66 and p12. The first three subunits 
correspond to the three subunits of S. cerevisiae Pol delta. 
p50 serves as a scaffold for the assembly of Pol delta 
by interacting simultaneously with all of the other three subunits. 
This entry corresponds to the OB fold domain found in 
the p50 subunit.
Length=129

 Score = 73.8 bits (182),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 25/44 (57%), Positives = 32/44 (73%), Gaps = 0/44 (0%)

Query  1    MLEDESGRLRLTGSLLTSTQLATGVIIAVLGTENANGDFETIDI  44
             LEDESGR++L G  +   +L TGV++AVLG EN +GDFE  DI
Sbjct  86   FLEDESGRIKLIGDKIDVDELVTGVVVAVLGRENEDGDFEVEDI  129



Lambda      K        H        a         alpha
   0.315    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0794    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00030383

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit O...  168     1e-50
CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon s...  171     1e-50


>CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit OB-fold 
domain.  The eukaryotic DNA polymerase delta (Pol delta) participates 
in genome replication, homologous recombination, DNA 
repair and damage tolerance. Human Pol delta consists of 
four subunits: p125, p50, p66 and p12. The first three subunits 
correspond to the three subunits of S. cerevisiae Pol delta. 
p50 serves as a scaffold for the assembly of Pol delta 
by interacting simultaneously with all of the other three subunits. 
This entry corresponds to the OB fold domain found in 
the p50 subunit.
Length=129

 Score = 168 bits (428),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 57/140 (41%), Positives = 80/140 (57%), Gaps = 11/140 (8%)

Query  70   QYGDMYFLRLARLKPVVEEVGTDAWEGFSIAGERARRVERVLDVRQGELCWVAGTVYMDM  129
            QY  +YF RL  L+P + E     W            V ++LD+++GE C + GT+Y +M
Sbjct  1    QYAHIYFARLEALRPRLLEAAKKKWGDVIP-------VNKILDLKEGEECIIIGTLYKEM  53

Query  130  PLKPNILDDLSRESHTLAPPPRRTYQDPAHPELTQIMLEDESGRLRLTGSLLTSTQLATG  189
             LKP+ILD+ S E+     PPR  Y         ++ LEDESGR++L G  +   +L TG
Sbjct  54   KLKPSILDEYSEENQLAPQPPRTKYTSDD----DELFLEDESGRIKLIGDKIDVDELVTG  109

Query  190  VIIAVLGTENANGDFETIDI  209
            V++AVLG EN +GDFE  DI
Sbjct  110  VVVAVLGRENEDGDFEVEDI  129


>CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon subunit 
B.  This family contains a number of DNA polymerase subunits. 
The B subunit of the DNA polymerase alpha plays an essential 
role at the initial stage of DNA replication in S. cerevisiae 
and is phosphorylated in a cell cycle-dependent manner. 
DNA polymerase epsilon is essential for cell viability and 
chromosomal DNA replication in budding yeast. In addition, DNA 
polymerase epsilon may be involved in DNA repair and cell-cycle 
checkpoint control. The enzyme consists of at least four 
subunits in mammalian cells as well as in yeast. The largest 
subunit of DNA polymerase epsilon is responsible for polymerase 
epsilon is responsible for polymerase activity. In 
mouse, the DNA polymerase epsilon subunit B is the second largest 
subunit of the DNA polymerase. A part of the N-terminal 
was found to be responsible for the interaction with SAP18. 
Experimental evidence suggests that this subunit may recruit 
histone deacetylase to the replication fork to modify the 
chromatin structure.
Length=210

 Score = 171 bits (435),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 108/249 (43%), Gaps = 43/249 (17%)

Query  238  IAFVSGLGITGTSSDTLALELLADYLLGYTGSDASSITRLIIAGNSLGANVTAEAAATDM  297
            I F SGL      SD L+LE L D L GY  ++ S   RLI+AG  L +     A+    
Sbjct  1    IVFASGLY---LDSDNLSLEALRDLLDGY--NEDSPPDRLILAGPFLDSKHNLIASG---  52

Query  298  EMGTAAKKKTGPRKYGYDASAYNASPITQLDNFLAEILPSIPVTLMPGESDPANF-ALPQ  356
                             D   YN   +  L + L ++L   PV L+PG +DPAN   LPQ
Sbjct  53   -------------AVAGDTLTYNFLFLKLLLSILEQLLEKTPVILVPGPNDPANSTVLPQ  99

Query  357  QGIHRAMFPRSRAYCAPPPPGDEAPEPGWFDSVTNPWEGDVEGWRLWGSSGQNVDDVLRY  416
                R + PR +                    VTNP    + G  +  +SG NV D+LRY
Sbjct  100  PPFPRCLLPRIKKNN-------------SLIFVTNPCRFSINGVEVVVTSGDNVSDLLRY  146

Query  417  LDFADRDAPDAGDGDIEARMRIMEAMLRWRCGAPTAPDTIWSYPFQTNDPFVMQSCPHIF  476
                          D++  +R++E +LR R  AP APDT+  YP+  +D FV+   P + 
Sbjct  147  ELKFSSS-------DVDRFLRLVETILRQRHLAPLAPDTLRPYPYDKDDAFVLYPLPDVL  199

Query  477  FAGN-QPRF  484
              G+  P F
Sbjct  200  ILGSELPSF  208



Lambda      K        H        a         alpha
   0.317    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690425736


Query= TCONS_00030384

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon s...  170     3e-51
CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit O...  112     2e-30


>CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon subunit 
B.  This family contains a number of DNA polymerase subunits. 
The B subunit of the DNA polymerase alpha plays an essential 
role at the initial stage of DNA replication in S. cerevisiae 
and is phosphorylated in a cell cycle-dependent manner. 
DNA polymerase epsilon is essential for cell viability and 
chromosomal DNA replication in budding yeast. In addition, DNA 
polymerase epsilon may be involved in DNA repair and cell-cycle 
checkpoint control. The enzyme consists of at least four 
subunits in mammalian cells as well as in yeast. The largest 
subunit of DNA polymerase epsilon is responsible for polymerase 
epsilon is responsible for polymerase activity. In 
mouse, the DNA polymerase epsilon subunit B is the second largest 
subunit of the DNA polymerase. A part of the N-terminal 
was found to be responsible for the interaction with SAP18. 
Experimental evidence suggests that this subunit may recruit 
histone deacetylase to the replication fork to modify the 
chromatin structure.
Length=210

 Score = 170 bits (432),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 108/249 (43%), Gaps = 43/249 (17%)

Query  112  IAFVSGLGITGTSSDTLALELLADYLLGYTGSDASSITRLIIAGNSLGANVTAEAAATDM  171
            I F SGL      SD L+LE L D L GY  ++ S   RLI+AG  L +     A+    
Sbjct  1    IVFASGLY---LDSDNLSLEALRDLLDGY--NEDSPPDRLILAGPFLDSKHNLIASG---  52

Query  172  EMGTAAKKKTGPRKYGYDASAYNASPITQLDNFLAEILPSIPVTLMPGESDPANF-ALPQ  230
                             D   YN   +  L + L ++L   PV L+PG +DPAN   LPQ
Sbjct  53   -------------AVAGDTLTYNFLFLKLLLSILEQLLEKTPVILVPGPNDPANSTVLPQ  99

Query  231  QGIHRAMFPRSRAYCAPPPPGDEAPEPGWFDSVTNPWEGDVEGWRLWGSSGQNVDDVLRY  290
                R + PR +                    VTNP    + G  +  +SG NV D+LRY
Sbjct  100  PPFPRCLLPRIKKNN-------------SLIFVTNPCRFSINGVEVVVTSGDNVSDLLRY  146

Query  291  LDFADRDAPDAGDGDIEARMRIMEAMLRWRCGAPTAPDTIWSYPFQTNDPFVMQSCPHIF  350
                          D++  +R++E +LR R  AP APDT+  YP+  +D FV+   P + 
Sbjct  147  ELKFSSS-------DVDRFLRLVETILRQRHLAPLAPDTLRPYPYDKDDAFVLYPLPDVL  199

Query  351  FAGN-QPRF  358
              G+  P F
Sbjct  200  ILGSELPSF  208


>CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit OB-fold 
domain.  The eukaryotic DNA polymerase delta (Pol delta) participates 
in genome replication, homologous recombination, DNA 
repair and damage tolerance. Human Pol delta consists of 
four subunits: p125, p50, p66 and p12. The first three subunits 
correspond to the three subunits of S. cerevisiae Pol delta. 
p50 serves as a scaffold for the assembly of Pol delta 
by interacting simultaneously with all of the other three subunits. 
This entry corresponds to the OB fold domain found in 
the p50 subunit.
Length=129

 Score = 112 bits (282),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 38/83 (46%), Positives = 51/83 (61%), Gaps = 4/83 (5%)

Query  1    MDMPLKPNILDDLSRESHTLAPPPRRTYQDPAHPELTQIMLEDESGRLRLTGSLLTSTQL  60
             +M LKP+ILD+ S E+     PPR  Y         ++ LEDESGR++L G  +   +L
Sbjct  51   KEMKLKPSILDEYSEENQLAPQPPRTKYTSDD----DELFLEDESGRIKLIGDKIDVDEL  106

Query  61   ATGVIIAVLGTENANGDFETIDI  83
             TGV++AVLG EN +GDFE  DI
Sbjct  107  VTGVVVAVLGRENEDGDFEVEDI  129



Lambda      K        H        a         alpha
   0.315    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00034934

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit O...  168     2e-51
CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon s...  137     9e-39


>CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit OB-fold 
domain.  The eukaryotic DNA polymerase delta (Pol delta) participates 
in genome replication, homologous recombination, DNA 
repair and damage tolerance. Human Pol delta consists of 
four subunits: p125, p50, p66 and p12. The first three subunits 
correspond to the three subunits of S. cerevisiae Pol delta. 
p50 serves as a scaffold for the assembly of Pol delta 
by interacting simultaneously with all of the other three subunits. 
This entry corresponds to the OB fold domain found in 
the p50 subunit.
Length=129

 Score = 168 bits (428),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 57/140 (41%), Positives = 80/140 (57%), Gaps = 11/140 (8%)

Query  70   QYGDMYFLRLARLKPVVEEVGTDAWEGFSIAGERARRVERVLDVRQGELCWVAGTVYMDM  129
            QY  +YF RL  L+P + E     W            V ++LD+++GE C + GT+Y +M
Sbjct  1    QYAHIYFARLEALRPRLLEAAKKKWGDVIP-------VNKILDLKEGEECIIIGTLYKEM  53

Query  130  PLKPNILDDLSRESHTLAPPPRRTYQDPAHPELTQIMLEDESGRLRLTGSLLTSTQLATG  189
             LKP+ILD+ S E+     PPR  Y         ++ LEDESGR++L G  +   +L TG
Sbjct  54   KLKPSILDEYSEENQLAPQPPRTKYTSDD----DELFLEDESGRIKLIGDKIDVDELVTG  109

Query  190  VIIAVLGTENANGDFETIDI  209
            V++AVLG EN +GDFE  DI
Sbjct  110  VVVAVLGRENEDGDFEVEDI  129


>CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon subunit 
B.  This family contains a number of DNA polymerase subunits. 
The B subunit of the DNA polymerase alpha plays an essential 
role at the initial stage of DNA replication in S. cerevisiae 
and is phosphorylated in a cell cycle-dependent manner. 
DNA polymerase epsilon is essential for cell viability and 
chromosomal DNA replication in budding yeast. In addition, DNA 
polymerase epsilon may be involved in DNA repair and cell-cycle 
checkpoint control. The enzyme consists of at least four 
subunits in mammalian cells as well as in yeast. The largest 
subunit of DNA polymerase epsilon is responsible for polymerase 
epsilon is responsible for polymerase activity. In 
mouse, the DNA polymerase epsilon subunit B is the second largest 
subunit of the DNA polymerase. A part of the N-terminal 
was found to be responsible for the interaction with SAP18. 
Experimental evidence suggests that this subunit may recruit 
histone deacetylase to the replication fork to modify the 
chromatin structure.
Length=210

 Score = 137 bits (348),  Expect = 9e-39, Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 94/220 (43%), Gaps = 42/220 (19%)

Query  238  IAFVSGLGITGTSSDTLALELLADYLLGYTGSDASSITRLIIAGNSLGANVTAEAAATDM  297
            I F SGL      SD L+LE L D L GY  ++ S   RLI+AG  L +     A+    
Sbjct  1    IVFASGLY---LDSDNLSLEALRDLLDGY--NEDSPPDRLILAGPFLDSKHNLIASG---  52

Query  298  EMGTAAKKKTGPRKYGYDASAYNASPITQLDNFLAEILPSIPVTLMPGESDPANF-ALPQ  356
                             D   YN   +  L + L ++L   PV L+PG +DPAN   LPQ
Sbjct  53   -------------AVAGDTLTYNFLFLKLLLSILEQLLEKTPVILVPGPNDPANSTVLPQ  99

Query  357  QGIHRAMFPRSRAYCAPPPPGDEAPEPGWFDSVTNPWEGDVEGWRLWGSSGQNVDDVLRY  416
                R + PR +                    VTNP    + G  +  +SG NV D+LRY
Sbjct  100  PPFPRCLLPRIKKNN-------------SLIFVTNPCRFSINGVEVVVTSGDNVSDLLRY  146

Query  417  LDFADRDAPDAGDGDIEARMRIMEAMLRWRCGAPTAPDTI  456
                          D++  +R++E +LR R  AP APDT+
Sbjct  147  ELKFSSS-------DVDRFLRLVETILRQRHLAPLAPDTL  179



Lambda      K        H        a         alpha
   0.318    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00034935

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon s...  138     1e-40
CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit O...  73.8    6e-17


>CDD:461142 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon subunit 
B.  This family contains a number of DNA polymerase subunits. 
The B subunit of the DNA polymerase alpha plays an essential 
role at the initial stage of DNA replication in S. cerevisiae 
and is phosphorylated in a cell cycle-dependent manner. 
DNA polymerase epsilon is essential for cell viability and 
chromosomal DNA replication in budding yeast. In addition, DNA 
polymerase epsilon may be involved in DNA repair and cell-cycle 
checkpoint control. The enzyme consists of at least four 
subunits in mammalian cells as well as in yeast. The largest 
subunit of DNA polymerase epsilon is responsible for polymerase 
epsilon is responsible for polymerase activity. In 
mouse, the DNA polymerase epsilon subunit B is the second largest 
subunit of the DNA polymerase. A part of the N-terminal 
was found to be responsible for the interaction with SAP18. 
Experimental evidence suggests that this subunit may recruit 
histone deacetylase to the replication fork to modify the 
chromatin structure.
Length=210

 Score = 138 bits (351),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 94/220 (43%), Gaps = 42/220 (19%)

Query  73   IAFVSGLGITGTSSDTLALELLADYLLGYTGSDASSITRLIIAGNSLGANVTAEAAATDM  132
            I F SGL      SD L+LE L D L GY  ++ S   RLI+AG  L +     A+    
Sbjct  1    IVFASGLY---LDSDNLSLEALRDLLDGY--NEDSPPDRLILAGPFLDSKHNLIASG---  52

Query  133  EMGTAAKKKTGPRKYGYDASAYNASPITQLDNFLAEILPSIPVTLMPGESDPANF-ALPQ  191
                             D   YN   +  L + L ++L   PV L+PG +DPAN   LPQ
Sbjct  53   -------------AVAGDTLTYNFLFLKLLLSILEQLLEKTPVILVPGPNDPANSTVLPQ  99

Query  192  QGIHRAMFPRSRAYCAPPPPGDEAPEPGWFDSVTNPWEGDVEGWRLWGSSGQNVDDVLRY  251
                R + PR +                    VTNP    + G  +  +SG NV D+LRY
Sbjct  100  PPFPRCLLPRIKKNN-------------SLIFVTNPCRFSINGVEVVVTSGDNVSDLLRY  146

Query  252  LDFADRDAPDAGDGDIEARMRIMEAMLRWRCGAPTAPDTI  291
                          D++  +R++E +LR R  AP APDT+
Sbjct  147  ELKFSSS-------DVDRFLRLVETILRQRHLAPLAPDTL  179


>CDD:436215 pfam18018, DNA_pol_D_N, DNA polymerase delta subunit OB-fold 
domain.  The eukaryotic DNA polymerase delta (Pol delta) participates 
in genome replication, homologous recombination, DNA 
repair and damage tolerance. Human Pol delta consists of 
four subunits: p125, p50, p66 and p12. The first three subunits 
correspond to the three subunits of S. cerevisiae Pol delta. 
p50 serves as a scaffold for the assembly of Pol delta 
by interacting simultaneously with all of the other three subunits. 
This entry corresponds to the OB fold domain found in 
the p50 subunit.
Length=129

 Score = 73.8 bits (182),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 25/44 (57%), Positives = 32/44 (73%), Gaps = 0/44 (0%)

Query  1    MLEDESGRLRLTGSLLTSTQLATGVIIAVLGTENANGDFETIDI  44
             LEDESGR++L G  +   +L TGV++AVLG EN +GDFE  DI
Sbjct  86   FLEDESGRIKLIGDKIDVDELVTGVVVAVLGRENEDGDFEVEDI  129



Lambda      K        H        a         alpha
   0.316    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00030385

Length=266


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00030386

Length=256


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00030387

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459745 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent decarb...  348     2e-120
CDD:397077 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent decarbox...  252     6e-84 


>CDD:459745 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent decarboxylase, 
C-terminal sheet domain.  These pyridoxal-dependent decarboxylases 
act on ornithine, lysine, arginine and related substrates.
Length=340

 Score = 348 bits (896),  Expect = 2e-120, Method: Composition-based stats.
 Identities = 125/318 (39%), Positives = 169/318 (53%), Gaps = 33/318 (10%)

Query  1    MAKLGNGFDCASKAEIDLALETGIDPSRIIYAQPCKTKSYLRYAAKVGVKQMTFDNADEL  60
            +A+LG GFD AS  E++ AL  G+DP RI++A P KT S +RYA + GV     D+ DEL
Sbjct  42   LAELGAGFDVASGGELERALAAGVDPERIVFAGPGKTDSEIRYALEAGVLCFNVDSEDEL  101

Query  61   YKIKACYPD--AELYLRILTDDST-----SLCRLSMKFGASLDIARQLLELAHELELKVV  113
             KI    P+  A + LRI  D        S   LS KFG  L+ A +LL LA EL L VV
Sbjct  102  EKIAKLAPELVARVALRINPDVDAGTHKISTGGLSSKFGIDLEDAPELLALAKELGLNVV  161

Query  114  GVSFHVGSGAEDPRAFLKAVQDARLVFDQAAEVGHELHTLDVGGGFCQD-------TFEK  166
            GV FH+GS   D   F++A+Q AR +FD+  E+G +L  LD+GGGF           FE+
Sbjct  162  GVHFHIGSQITDLEPFVEALQRARELFDRLRELGIDLKLLDIGGGFGIPYRDEPPPDFEE  221

Query  167  FAGILSEALDTYFPPHIRVIAEPGRYYVASAFTLAANVIARRDVRDPKDPANDTYMLYLN  226
            +A  + EALD YFPP + +IAEPGRY VA+A  L   VIA +              + ++
Sbjct  222  YAAAIREALDEYFPPDLEIIAEPGRYLVANAGVLVTRVIAVKTGG-------GKTFVIVD  274

Query  227  DGVYGNFSNIIFDHQHPVAKILTCSGETQPSALNAATSEGIAYSIWGPTCDGIDVITQRI  286
             G+   F   ++D  HP+  +                     Y + GPTC+  DV+ +  
Sbjct  275  AGMNDLFRPALYDAYHPIPVV-----------KEPGEGPLETYDVVGPTCESGDVLAKDR  323

Query  287  VLPGLLDVGDWLYFEEMG  304
             LP  L+VGD L FE+ G
Sbjct  324  ELPE-LEVGDLLAFEDAG  340


>CDD:397077 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent decarboxylase, 
pyridoxal binding domain.  These pyridoxal-dependent decarboxylases 
acting on ornithine, lysine, arginine and related substrates 
This domain has a TIM barrel fold.
Length=241

 Score = 252 bits (645),  Expect = 6e-84, Method: Composition-based stats.
 Identities = 111/206 (54%), Positives = 140/206 (68%), Gaps = 11/206 (5%)

Query  1    MAKLGNGFDCASKAEIDLALETGIDPSRIIYAQPCKTKSYLRYAAKVGVKQMTFDNADEL  60
            +A+LG GFDCASK E++  L  G+ P RII+A PCK +S+LRYA +VGV  +T DN DEL
Sbjct  36   LAELGTGFDCASKGELERVLAAGVPPERIIFANPCKQRSFLRYALEVGVGCVTVDNVDEL  95

Query  61   YKIKACYPDAELYLRILTDDSTSLCRLSMKFGASLDIA-RQLLELAHELELKVVGVSFHV  119
             K+    P+A + LRI  DDS + C LS KFGA LD     LLE A  L L+VVGVSFHV
Sbjct  96   EKLARLAPEARVLLRIKPDDSAATCPLSSKFGADLDEDVEALLEAAKLLNLQVVGVSFHV  155

Query  120  GSGAEDPRAFLKAVQDARLVFDQAAEVGHELHTLDVGGGFCQD--------TFEKFAGIL  171
            GSG  D  AF+ A++DAR VFDQ AE+G  L  LD+GGGF  D         FE++A ++
Sbjct  156  GSGCTDAEAFVLALEDARGVFDQGAELGFNLKILDLGGGFGVDYTEGEEPLDFEEYANVI  215

Query  172  SEALDTYFP--PHIRVIAEPGRYYVA  195
            +EAL+ YFP  P + +IAEPGRY+VA
Sbjct  216  NEALEEYFPGDPGVTIIAEPGRYFVA  241



Lambda      K        H        a         alpha
   0.321    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00030388

Length=735


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 932752432


Query= TCONS_00034937

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459745 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent decarb...  269     9e-89
CDD:397077 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent decarbox...  177     3e-54


>CDD:459745 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent decarboxylase, 
C-terminal sheet domain.  These pyridoxal-dependent decarboxylases 
act on ornithine, lysine, arginine and related substrates.
Length=340

 Score = 269 bits (691),  Expect = 9e-89, Method: Composition-based stats.
 Identities = 100/270 (37%), Positives = 135/270 (50%), Gaps = 33/270 (12%)

Query  98   VKQMTFDNADELYKIKACYPD--AELYLRILTDDST-----SLCRLSMKFGASLDIARQL  150
            V     D+ DEL KI    P+  A + LRI  D        S   LS KFG  L+ A +L
Sbjct  90   VLCFNVDSEDELEKIAKLAPELVARVALRINPDVDAGTHKISTGGLSSKFGIDLEDAPEL  149

Query  151  LELAHELELKVVGVSFHVGSGAEDPRAFLKAVQDARLVFDQAAEVGHELHTLDVGGGFCQ  210
            L LA EL L VVGV FH+GS   D   F++A+Q AR +FD+  E+G +L  LD+GGGF  
Sbjct  150  LALAKELGLNVVGVHFHIGSQITDLEPFVEALQRARELFDRLRELGIDLKLLDIGGGFGI  209

Query  211  D-------TFEKFAGILSEALDTYFPPHIRVIAEPGRYYVASAFTLAANVIARRDVRDPK  263
                     FE++A  + EALD YFPP + +IAEPGRY VA+A  L   VIA +      
Sbjct  210  PYRDEPPPDFEEYAAAIREALDEYFPPDLEIIAEPGRYLVANAGVLVTRVIAVKTGG---  266

Query  264  DPANDTYMLYLNDGVYGNFSNIIFDHQHPVAKILTCSGETQPSALNAATSEGIAYSIWGP  323
                    + ++ G+   F   ++D  HP+  +                     Y + GP
Sbjct  267  ----GKTFVIVDAGMNDLFRPALYDAYHPIPVV-----------KEPGEGPLETYDVVGP  311

Query  324  TCDGIDVITQRIVLPGLLDVGDWLYFEEMG  353
            TC+  DV+ +   LP  L+VGD L FE+ G
Sbjct  312  TCESGDVLAKDRELPE-LEVGDLLAFEDAG  340


>CDD:397077 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent decarboxylase, 
pyridoxal binding domain.  These pyridoxal-dependent decarboxylases 
acting on ornithine, lysine, arginine and related substrates 
This domain has a TIM barrel fold.
Length=241

 Score = 177 bits (451),  Expect = 3e-54, Method: Composition-based stats.
 Identities = 87/170 (51%), Positives = 110/170 (65%), Gaps = 12/170 (7%)

Query  86   RQHLRWKMNLGRVKQMTFDNADELYKIKACYPDAELYLRILTDDSTSLCRLSMKFGASLD  145
            R  LR+ + +G V  +T DN DEL K+    P+A + LRI  DDS + C LS KFGA LD
Sbjct  73   RSFLRYALEVG-VGCVTVDNVDELEKLARLAPEARVLLRIKPDDSAATCPLSSKFGADLD  131

Query  146  IA-RQLLELAHELELKVVGVSFHVGSGAEDPRAFLKAVQDARLVFDQAAEVGHELHTLDV  204
                 LLE A  L L+VVGVSFHVGSG  D  AF+ A++DAR VFDQ AE+G  L  LD+
Sbjct  132  EDVEALLEAAKLLNLQVVGVSFHVGSGCTDAEAFVLALEDARGVFDQGAELGFNLKILDL  191

Query  205  GGGFCQD--------TFEKFAGILSEALDTYFP--PHIRVIAEPGRYYVA  244
            GGGF  D         FE++A +++EAL+ YFP  P + +IAEPGRY+VA
Sbjct  192  GGGFGVDYTEGEEPLDFEEYANVINEALEEYFPGDPGVTIIAEPGRYFVA  241



Lambda      K        H        a         alpha
   0.321    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00034936

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459745 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent decarb...  264     3e-88
CDD:397077 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent decarbox...  171     6e-53


>CDD:459745 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent decarboxylase, 
C-terminal sheet domain.  These pyridoxal-dependent decarboxylases 
act on ornithine, lysine, arginine and related substrates.
Length=340

 Score = 264 bits (678),  Expect = 3e-88, Method: Composition-based stats.
 Identities = 99/267 (37%), Positives = 134/267 (50%), Gaps = 33/267 (12%)

Query  1    MTFDNADELYKIKACYPD--AELYLRILTDDST-----SLCRLSMKFGASLDIARQLLEL  53
               D+ DEL KI    P+  A + LRI  D        S   LS KFG  L+ A +LL L
Sbjct  93   FNVDSEDELEKIAKLAPELVARVALRINPDVDAGTHKISTGGLSSKFGIDLEDAPELLAL  152

Query  54   AHELELKVVGVSFHVGSGAEDPRAFLKAVQDARLVFDQAAEVGHELHTLDVGGGFCQD--  111
            A EL L VVGV FH+GS   D   F++A+Q AR +FD+  E+G +L  LD+GGGF     
Sbjct  153  AKELGLNVVGVHFHIGSQITDLEPFVEALQRARELFDRLRELGIDLKLLDIGGGFGIPYR  212

Query  112  -----TFEKFAGILSEALDTYFPPHIRVIAEPGRYYVASAFTLAANVIARRDVRDPKDPA  166
                  FE++A  + EALD YFPP + +IAEPGRY VA+A  L   VIA +         
Sbjct  213  DEPPPDFEEYAAAIREALDEYFPPDLEIIAEPGRYLVANAGVLVTRVIAVKTGG------  266

Query  167  NDTYMLYLNDGVYGNFSNIIFDHQHPVAKILTCSGETQPSALNAATSEGIAYSIWGPTCD  226
                 + ++ G+   F   ++D  HP+  +                     Y + GPTC+
Sbjct  267  -GKTFVIVDAGMNDLFRPALYDAYHPIPVV-----------KEPGEGPLETYDVVGPTCE  314

Query  227  GIDVITQRIVLPGLLDVGDWLYFEEMG  253
              DV+ +   LP  L+VGD L FE+ G
Sbjct  315  SGDVLAKDRELPE-LEVGDLLAFEDAG  340


>CDD:397077 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent decarboxylase, 
pyridoxal binding domain.  These pyridoxal-dependent decarboxylases 
acting on ornithine, lysine, arginine and related substrates 
This domain has a TIM barrel fold.
Length=241

 Score = 171 bits (435),  Expect = 6e-53, Method: Composition-based stats.
 Identities = 82/155 (53%), Positives = 102/155 (66%), Gaps = 11/155 (7%)

Query  1    MTFDNADELYKIKACYPDAELYLRILTDDSTSLCRLSMKFGASLDIA-RQLLELAHELEL  59
            +T DN DEL K+    P+A + LRI  DDS + C LS KFGA LD     LLE A  L L
Sbjct  87   VTVDNVDELEKLARLAPEARVLLRIKPDDSAATCPLSSKFGADLDEDVEALLEAAKLLNL  146

Query  60   KVVGVSFHVGSGAEDPRAFLKAVQDARLVFDQAAEVGHELHTLDVGGGFCQD--------  111
            +VVGVSFHVGSG  D  AF+ A++DAR VFDQ AE+G  L  LD+GGGF  D        
Sbjct  147  QVVGVSFHVGSGCTDAEAFVLALEDARGVFDQGAELGFNLKILDLGGGFGVDYTEGEEPL  206

Query  112  TFEKFAGILSEALDTYFP--PHIRVIAEPGRYYVA  144
             FE++A +++EAL+ YFP  P + +IAEPGRY+VA
Sbjct  207  DFEEYANVINEALEEYFPGDPGVTIIAEPGRYFVA  241



Lambda      K        H        a         alpha
   0.321    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00030389

Length=1159


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1482804756


Query= TCONS_00034938

Length=1159


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1482804756


Query= TCONS_00030390

Length=706
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460545 pfam02383, Syja_N, SacI homology domain. This Pfam fam...  378     2e-127


>CDD:460545 pfam02383, Syja_N, SacI homology domain.  This Pfam family represents 
a protein domain which shows homology to the yeast 
protein SacI. The SacI homology domain is most notably found 
at the amino terminal of the inositol 5'-phosphatase synaptojanin.
Length=295

 Score = 378 bits (973),  Expect = 2e-127, Method: Composition-based stats.
 Identities = 138/355 (39%), Positives = 180/355 (51%), Gaps = 68/355 (19%)

Query  60   GILGMIKLKLDKYIIVITKAQPMGRLRGHMVYKVAATEFLPLR-------ERPLHDHDED  112
            GILG+I+L    Y+IVITK + +G++ GH +YK+   EF+PL               DE+
Sbjct  2    GILGLIRLLSGYYLIVITKREQVGQIGGHPIYKITDVEFIPLNSSLSDTQLAKKEHPDEE  61

Query  113  TYLALLKELLRTGPMYFSYALDLTNSFQRQSQSDPSLPLWKRADDRFFWNRFIQSDLIDF  172
              L LLK  L +G  YFSY  DLTNS QR      S   +   DDRFFWNR +   LIDF
Sbjct  62   RLLKLLKLFLSSGSFYFSYDYDLTNSLQRNLTRSRSPS-FDSLDDRFFWNRHLLKPLIDF  120

Query  173  SLGAHDATGLRYGPQPGADPFILPVIFGMLRITPARVKSTSFTFALITRRSRHRGGTRYF  232
                          Q   D +ILP+I G +      V   S T  LI+RRSR R GTRY 
Sbjct  121  --------------QLDLDRWILPLIQGFVEQGKLSVFGRSVTLTLISRRSRKRAGTRYL  166

Query  233  SRGIDEHGHVSNYNETEQIVILNDAAGGLSGFAPGQSMAKDKSGGSGQDLQIMSFVQTRG  292
             RGID+ G+V+N+ ETEQIV LN                      S  + +I SFVQ RG
Sbjct  167  RRGIDDDGNVANFVETEQIVSLNT---------------------SNSEGKIFSFVQIRG  205

Query  293  SVPVYWAEVNNLKYIPKLQVRGVETAVDAARKHFSEQIRIYGENYMVNLVNQKGREERVK  352
            S+P++W++  NLKY PK+Q+   E    A +KHF + I  YG  ++VNLV +KGRE ++ 
Sbjct  206  SIPLFWSQDPNLKYKPKIQITRPEATQPAFKKHFDDLIERYGPVHIVNLVEKKGRESKLS  265

Query  353  TAYEQLVRILVSSSIEDTEADENTSEKVHVVESGQKQKELDRLHYIYFDFHNETK  407
             AYE+ V+ L                          Q   D+L Y  FDFH+E K
Sbjct  266  EAYEEAVKYL-------------------------NQFLPDKLRYTAFDFHHECK  295



Lambda      K        H        a         alpha
   0.322    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 904046270


Query= TCONS_00030391

Length=604
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460545 pfam02383, Syja_N, SacI homology domain. This Pfam fam...  360     9e-122


>CDD:460545 pfam02383, Syja_N, SacI homology domain.  This Pfam family represents 
a protein domain which shows homology to the yeast 
protein SacI. The SacI homology domain is most notably found 
at the amino terminal of the inositol 5'-phosphatase synaptojanin.
Length=295

 Score = 360 bits (926),  Expect = 9e-122, Method: Composition-based stats.
 Identities = 132/347 (38%), Positives = 174/347 (50%), Gaps = 68/347 (20%)

Query  4    VADKYIIVITKAQPMGRLRGHMVYKVAATEFLPLR-------ERPLHDHDEDTYLALLKE  56
            ++  Y+IVITK + +G++ GH +YK+   EF+PL               DE+  L LLK 
Sbjct  10   LSGYYLIVITKREQVGQIGGHPIYKITDVEFIPLNSSLSDTQLAKKEHPDEERLLKLLKL  69

Query  57   LLRTGPMYFSYALDLTNSFQRQSQSDPSLPLWKRADDRFFWNRFIQSDLIDFSLGAHDAT  116
             L +G  YFSY  DLTNS QR      S   +   DDRFFWNR +   LIDF        
Sbjct  70   FLSSGSFYFSYDYDLTNSLQRNLTRSRSPS-FDSLDDRFFWNRHLLKPLIDF--------  120

Query  117  GLRYGPQPGADPFILPVIFGMLRITPARVKSTSFTFALITRRSRHRGGTRYFSRGIDEHG  176
                  Q   D +ILP+I G +      V   S T  LI+RRSR R GTRY  RGID+ G
Sbjct  121  ------QLDLDRWILPLIQGFVEQGKLSVFGRSVTLTLISRRSRKRAGTRYLRRGIDDDG  174

Query  177  HVSNYNETEQIVILNDAAGGLSGFAPGQSMAKDKSGGSGQDLQIMSFVQTRGSVPVYWAE  236
            +V+N+ ETEQIV LN                      S  + +I SFVQ RGS+P++W++
Sbjct  175  NVANFVETEQIVSLNT---------------------SNSEGKIFSFVQIRGSIPLFWSQ  213

Query  237  VNNLKYIPKLQVRGVETAVDAARKHFSEQIRIYGENYMVNLVNQKGREERVKTAYEQLVR  296
              NLKY PK+Q+   E    A +KHF + I  YG  ++VNLV +KGRE ++  AYE+ V+
Sbjct  214  DPNLKYKPKIQITRPEATQPAFKKHFDDLIERYGPVHIVNLVEKKGRESKLSEAYEEAVK  273

Query  297  ILVSSSIEDTEADENTSEKVHVVESGQKQKELDRLHYIYFDFHNETK  343
             L                          Q   D+L Y  FDFH+E K
Sbjct  274  YL-------------------------NQFLPDKLRYTAFDFHHECK  295



Lambda      K        H        a         alpha
   0.324    0.139    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 765147136


Query= TCONS_00030392

Length=668
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460545 pfam02383, Syja_N, SacI homology domain. This Pfam fam...  377     2e-127


>CDD:460545 pfam02383, Syja_N, SacI homology domain.  This Pfam family represents 
a protein domain which shows homology to the yeast 
protein SacI. The SacI homology domain is most notably found 
at the amino terminal of the inositol 5'-phosphatase synaptojanin.
Length=295

 Score = 377 bits (970),  Expect = 2e-127, Method: Composition-based stats.
 Identities = 138/355 (39%), Positives = 180/355 (51%), Gaps = 68/355 (19%)

Query  60   GILGMIKLKLDKYIIVITKAQPMGRLRGHMVYKVAATEFLPLR-------ERPLHDHDED  112
            GILG+I+L    Y+IVITK + +G++ GH +YK+   EF+PL               DE+
Sbjct  2    GILGLIRLLSGYYLIVITKREQVGQIGGHPIYKITDVEFIPLNSSLSDTQLAKKEHPDEE  61

Query  113  TYLALLKELLRTGPMYFSYALDLTNSFQRQSQSDPSLPLWKRADDRFFWNRFIQSDLIDF  172
              L LLK  L +G  YFSY  DLTNS QR      S   +   DDRFFWNR +   LIDF
Sbjct  62   RLLKLLKLFLSSGSFYFSYDYDLTNSLQRNLTRSRSPS-FDSLDDRFFWNRHLLKPLIDF  120

Query  173  SLGAHDATGLRYGPQPGADPFILPVIFGMLRITPARVKSTSFTFALITRRSRHRGGTRYF  232
                          Q   D +ILP+I G +      V   S T  LI+RRSR R GTRY 
Sbjct  121  --------------QLDLDRWILPLIQGFVEQGKLSVFGRSVTLTLISRRSRKRAGTRYL  166

Query  233  SRGIDEHGHVSNYNETEQIVILNDAAGGLSGFAPGQSMAKDKSGGSGQDLQIMSFVQTRG  292
             RGID+ G+V+N+ ETEQIV LN                      S  + +I SFVQ RG
Sbjct  167  RRGIDDDGNVANFVETEQIVSLNT---------------------SNSEGKIFSFVQIRG  205

Query  293  SVPVYWAEVNNLKYIPKLQVRGVETAVDAARKHFSEQIRIYGENYMVNLVNQKGREERVK  352
            S+P++W++  NLKY PK+Q+   E    A +KHF + I  YG  ++VNLV +KGRE ++ 
Sbjct  206  SIPLFWSQDPNLKYKPKIQITRPEATQPAFKKHFDDLIERYGPVHIVNLVEKKGRESKLS  265

Query  353  TAYEQLVRILVSSSIEDTEADENTSEKVHVVESGQKQKELDRLHYIYFDFHNETK  407
             AYE+ V+ L                          Q   D+L Y  FDFH+E K
Sbjct  266  EAYEEAVKYL-------------------------NQFLPDKLRYTAFDFHHECK  295



Lambda      K        H        a         alpha
   0.323    0.139    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 848004250


Query= TCONS_00030393

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00034939

Length=537


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00030395

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429519 pfam07534, TLD, TLD. This domain is predicted to be an...  86.9    9e-21


>CDD:429519 pfam07534, TLD, TLD.  This domain is predicted to be an enzyme 
and is often found associated with pfam01476. It's structure 
consists of a beta-sandwich surrounded by two helices and 
two one-turn helices.
Length=139

 Score = 86.9 bits (216),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 61/185 (33%), Gaps = 48/185 (26%)

Query  387  VFSTAVHGSSLTSFSHNVLTWNAGTLLLLEGAVSESSEHGEGMVTLGAYLPQPWKSAPLS  446
            ++ST+  GSS  +F   +      TLL+++                GA+  QPWK     
Sbjct  2    LYSTSRDGSSYQTFLEKI-DNKGPTLLIIK---------DNDGYIFGAFASQPWK-----  46

Query  447  HSSTKPSDSSALPCLFELSPKHQLLQGNPSPSVQKPNAPVAYF-STSTGIAIGCQIPPPS  505
              S K         LF LSP+    +     +        AYF  TS G+  G   P   
Sbjct  47   -VSGKKFYGDGESFLFSLSPQFDPYKWTGKNN--------AYFNCTSDGLGFGGGQP---  94

Query  506  RSQLLTPTPLGAGSLTVDTSLESATFYMSSIGHNGVFLPPATTSMSEETVRKQIDIYTME  565
                          L +D+ LE              F     +   +E    +  I  +E
Sbjct  95   -----------KFDLWIDSDLEFGYSRHC-----ETFGNGQLSGSGQE----RFKIDDVE  134

Query  566  IWGLV  570
            +WGL 
Sbjct  135  VWGLG  139



Lambda      K        H        a         alpha
   0.315    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 809659710


Query= TCONS_00034940

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429519 pfam07534, TLD, TLD. This domain is predicted to be an...  86.9    9e-21


>CDD:429519 pfam07534, TLD, TLD.  This domain is predicted to be an enzyme 
and is often found associated with pfam01476. It's structure 
consists of a beta-sandwich surrounded by two helices and 
two one-turn helices.
Length=139

 Score = 86.9 bits (216),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 61/185 (33%), Gaps = 48/185 (26%)

Query  387  VFSTAVHGSSLTSFSHNVLTWNAGTLLLLEGAVSESSEHGEGMVTLGAYLPQPWKSAPLS  446
            ++ST+  GSS  +F   +      TLL+++                GA+  QPWK     
Sbjct  2    LYSTSRDGSSYQTFLEKI-DNKGPTLLIIK---------DNDGYIFGAFASQPWK-----  46

Query  447  HSSTKPSDSSALPCLFELSPKHQLLQGNPSPSVQKPNAPVAYF-STSTGIAIGCQIPPPS  505
              S K         LF LSP+    +     +        AYF  TS G+  G   P   
Sbjct  47   -VSGKKFYGDGESFLFSLSPQFDPYKWTGKNN--------AYFNCTSDGLGFGGGQP---  94

Query  506  RSQLLTPTPLGAGSLTVDTSLESATFYMSSIGHNGVFLPPATTSMSEETVRKQIDIYTME  565
                          L +D+ LE              F     +   +E    +  I  +E
Sbjct  95   -----------KFDLWIDSDLEFGYSRHC-----ETFGNGQLSGSGQE----RFKIDDVE  134

Query  566  IWGLV  570
            +WGL 
Sbjct  135  VWGLG  139



Lambda      K        H        a         alpha
   0.315    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0745    0.140     1.90     42.6     43.6 

Effective search space used: 809659710


Query= TCONS_00034942

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429519 pfam07534, TLD, TLD. This domain is predicted to be an...  86.9    9e-21


>CDD:429519 pfam07534, TLD, TLD.  This domain is predicted to be an enzyme 
and is often found associated with pfam01476. It's structure 
consists of a beta-sandwich surrounded by two helices and 
two one-turn helices.
Length=139

 Score = 86.9 bits (216),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 61/185 (33%), Gaps = 48/185 (26%)

Query  387  VFSTAVHGSSLTSFSHNVLTWNAGTLLLLEGAVSESSEHGEGMVTLGAYLPQPWKSAPLS  446
            ++ST+  GSS  +F   +      TLL+++                GA+  QPWK     
Sbjct  2    LYSTSRDGSSYQTFLEKI-DNKGPTLLIIK---------DNDGYIFGAFASQPWK-----  46

Query  447  HSSTKPSDSSALPCLFELSPKHQLLQGNPSPSVQKPNAPVAYF-STSTGIAIGCQIPPPS  505
              S K         LF LSP+    +     +        AYF  TS G+  G   P   
Sbjct  47   -VSGKKFYGDGESFLFSLSPQFDPYKWTGKNN--------AYFNCTSDGLGFGGGQP---  94

Query  506  RSQLLTPTPLGAGSLTVDTSLESATFYMSSIGHNGVFLPPATTSMSEETVRKQIDIYTME  565
                          L +D+ LE              F     +   +E    +  I  +E
Sbjct  95   -----------KFDLWIDSDLEFGYSRHC-----ETFGNGQLSGSGQE----RFKIDDVE  134

Query  566  IWGLV  570
            +WGL 
Sbjct  135  VWGLG  139



Lambda      K        H        a         alpha
   0.315    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 809659710


Query= TCONS_00034943

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429519 pfam07534, TLD, TLD. This domain is predicted to be an...  86.9    9e-21


>CDD:429519 pfam07534, TLD, TLD.  This domain is predicted to be an enzyme 
and is often found associated with pfam01476. It's structure 
consists of a beta-sandwich surrounded by two helices and 
two one-turn helices.
Length=139

 Score = 86.9 bits (216),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 61/185 (33%), Gaps = 48/185 (26%)

Query  387  VFSTAVHGSSLTSFSHNVLTWNAGTLLLLEGAVSESSEHGEGMVTLGAYLPQPWKSAPLS  446
            ++ST+  GSS  +F   +      TLL+++                GA+  QPWK     
Sbjct  2    LYSTSRDGSSYQTFLEKI-DNKGPTLLIIK---------DNDGYIFGAFASQPWK-----  46

Query  447  HSSTKPSDSSALPCLFELSPKHQLLQGNPSPSVQKPNAPVAYF-STSTGIAIGCQIPPPS  505
              S K         LF LSP+    +     +        AYF  TS G+  G   P   
Sbjct  47   -VSGKKFYGDGESFLFSLSPQFDPYKWTGKNN--------AYFNCTSDGLGFGGGQP---  94

Query  506  RSQLLTPTPLGAGSLTVDTSLESATFYMSSIGHNGVFLPPATTSMSEETVRKQIDIYTME  565
                          L +D+ LE              F     +   +E    +  I  +E
Sbjct  95   -----------KFDLWIDSDLEFGYSRHC-----ETFGNGQLSGSGQE----RFKIDDVE  134

Query  566  IWGLV  570
            +WGL 
Sbjct  135  VWGLG  139



Lambda      K        H        a         alpha
   0.315    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 809659710


Query= TCONS_00034944

Length=646
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  165     3e-48
CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV. Thi...  130     3e-36
CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II. Thi...  126     1e-35
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  96.8    8e-25
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  57.3    4e-11


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 165 bits (421),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 60/146 (41%), Positives = 84/146 (58%), Gaps = 14/146 (10%)

Query  1    MDSMDLEREKGITIQSAATFCDWIKKGDDGKEEKYHINLIDTPGHIDFTIEVERALRVLD  60
            +D++  ERE+GITI+SAA   +          + Y INLIDTPGH+DF  EV R L   D
Sbjct  44   LDNLPEERERGITIKSAAVSFET---------KDYLINLIDTPGHVDFVKEVIRGLAQAD  94

Query  61   GAVMILCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDRM-GANPFKAVEQINTKL--KI  117
            GA++++ AV GV  QT    R  R+  VP I F+NKMDR+ GA   + VE+++ +L  K 
Sbjct  95   GAILVVDAVEGVMPQTREHLRLARQLGVPIIVFINKMDRVDGAELEEVVEEVSRELLEKY  154

Query  118  PAAAVQVPI--GAEDEFEGVVDLIRM  141
                  VP+  G+  + EGV  L+  
Sbjct  155  GEDGEFVPVVPGSALKGEGVQTLLDA  180


>CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV.  This domain 
is found in elongation factor G, elongation factor 2 and 
some tetracycline resistance proteins and adopts a ribosomal 
protein S5 domain 2-like fold.
Length=121

 Score = 130 bits (328),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 55/121 (45%), Positives = 79/121 (65%), Gaps = 1/121 (1%)

Query  436  PQVAYRETIGNRVE-FDHLLKKQSGGPGEYARVVGWMEPTGKLEDNKFEEQIVGGSISEK  494
            PQVAYRETI   V+   +  KKQSGG G+YARV+  +EP      N+F ++ VGG I ++
Sbjct  1    PQVAYRETIRKPVKERAYKHKKQSGGDGQYARVILRIEPLPPGSGNEFVDETVGGQIPKE  60

Query  495  FLFACEKGFNLACEKGPLIGHKVLGTKMVINDGATHMTDSSEMSFKNATQQAFRKAFMES  554
            F+ A EKGF  A ++GPL G  V   K+ + DG+ H  DSSE +F  A ++AFR+A +++
Sbjct  61   FIPAVEKGFQEAMKEGPLAGEPVTDVKVTLLDGSYHEVDSSEAAFIPAARRAFREALLKA  120

Query  555  N  555
            +
Sbjct  121  S  121


>CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II.  This domain 
is found in Elongation Factor G. It shares a similar structure 
with domain V (pfam00679).
Length=75

 Score = 126 bits (319),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 38/75 (51%), Positives = 53/75 (71%), Gaps = 0/75 (0%)

Query  361  VPEPVISLSIKPKNSKDSANFSKAMARFQREDPTFRVSYNAESEETLISGMGELHLDIYI  420
             PEPVIS++I+PK   D    SKA+ R   EDPT RV  + E+ ET++SGMGELHL+I +
Sbjct  1    FPEPVISVAIEPKTKGDEDKLSKALNRLLEEDPTLRVERDEETGETILSGMGELHLEIVV  60

Query  421  ERMRREYRVDCVTGP  435
            +R++R+Y V+   GP
Sbjct  61   DRLKRKYGVEVELGP  75


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 96.8 bits (242),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 33/85 (39%), Positives = 49/85 (58%), Gaps = 1/85 (1%)

Query  558  VLEPMMKIAVTAPGEFQGDVISLLNKRNATINDTET-GVDEFTVYADCSLNGMFGFSTHL  616
            +LEP+ K+ +  P E+ GDVIS LN R   I D +        + A+  L  +FGF+T L
Sbjct  2    LLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGGRVVIEAEVPLAELFGFATEL  61

Query  617  RAATQGKGEFTMEFSHYEKAQPQLQ  641
            R+ T+G+G F+MEFS Y+     + 
Sbjct  62   RSLTKGRGSFSMEFSGYQPVPGDIL  86


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 57.3 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 23/73 (32%), Positives = 32/73 (44%), Gaps = 6/73 (8%)

Query  282  GQLTYIRVYQGTLRKGANVFNARNNKK-----VKVPRIVRMHSNEMEEVSEIGAGEICAV  336
            G +   RV  GTL+KG  V    N         +V  ++  H+   E V+   AG I A 
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAG  60

Query  337  FGVDCA-SGDTFT  348
             G++    GDT T
Sbjct  61   VGLEDIRVGDTLT  73



Lambda      K        H        a         alpha
   0.317    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 815558870


Query= TCONS_00030397

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429519 pfam07534, TLD, TLD. This domain is predicted to be an...  86.9    9e-21


>CDD:429519 pfam07534, TLD, TLD.  This domain is predicted to be an enzyme 
and is often found associated with pfam01476. It's structure 
consists of a beta-sandwich surrounded by two helices and 
two one-turn helices.
Length=139

 Score = 86.9 bits (216),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 61/185 (33%), Gaps = 48/185 (26%)

Query  387  VFSTAVHGSSLTSFSHNVLTWNAGTLLLLEGAVSESSEHGEGMVTLGAYLPQPWKSAPLS  446
            ++ST+  GSS  +F   +      TLL+++                GA+  QPWK     
Sbjct  2    LYSTSRDGSSYQTFLEKI-DNKGPTLLIIK---------DNDGYIFGAFASQPWK-----  46

Query  447  HSSTKPSDSSALPCLFELSPKHQLLQGNPSPSVQKPNAPVAYF-STSTGIAIGCQIPPPS  505
              S K         LF LSP+    +     +        AYF  TS G+  G   P   
Sbjct  47   -VSGKKFYGDGESFLFSLSPQFDPYKWTGKNN--------AYFNCTSDGLGFGGGQP---  94

Query  506  RSQLLTPTPLGAGSLTVDTSLESATFYMSSIGHNGVFLPPATTSMSEETVRKQIDIYTME  565
                          L +D+ LE              F     +   +E    +  I  +E
Sbjct  95   -----------KFDLWIDSDLEFGYSRHC-----ETFGNGQLSGSGQE----RFKIDDVE  134

Query  566  IWGLV  570
            +WGL 
Sbjct  135  VWGLG  139



Lambda      K        H        a         alpha
   0.315    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 809659710


Query= TCONS_00030398

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429519 pfam07534, TLD, TLD. This domain is predicted to be an...  86.9    9e-21


>CDD:429519 pfam07534, TLD, TLD.  This domain is predicted to be an enzyme 
and is often found associated with pfam01476. It's structure 
consists of a beta-sandwich surrounded by two helices and 
two one-turn helices.
Length=139

 Score = 86.9 bits (216),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 61/185 (33%), Gaps = 48/185 (26%)

Query  387  VFSTAVHGSSLTSFSHNVLTWNAGTLLLLEGAVSESSEHGEGMVTLGAYLPQPWKSAPLS  446
            ++ST+  GSS  +F   +      TLL+++                GA+  QPWK     
Sbjct  2    LYSTSRDGSSYQTFLEKI-DNKGPTLLIIK---------DNDGYIFGAFASQPWK-----  46

Query  447  HSSTKPSDSSALPCLFELSPKHQLLQGNPSPSVQKPNAPVAYF-STSTGIAIGCQIPPPS  505
              S K         LF LSP+    +     +        AYF  TS G+  G   P   
Sbjct  47   -VSGKKFYGDGESFLFSLSPQFDPYKWTGKNN--------AYFNCTSDGLGFGGGQP---  94

Query  506  RSQLLTPTPLGAGSLTVDTSLESATFYMSSIGHNGVFLPPATTSMSEETVRKQIDIYTME  565
                          L +D+ LE              F     +   +E    +  I  +E
Sbjct  95   -----------KFDLWIDSDLEFGYSRHC-----ETFGNGQLSGSGQE----RFKIDDVE  134

Query  566  IWGLV  570
            +WGL 
Sbjct  135  VWGLG  139



Lambda      K        H        a         alpha
   0.315    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 809659710


Query= TCONS_00034945

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429519 pfam07534, TLD, TLD. This domain is predicted to be an...  86.9    9e-21


>CDD:429519 pfam07534, TLD, TLD.  This domain is predicted to be an enzyme 
and is often found associated with pfam01476. It's structure 
consists of a beta-sandwich surrounded by two helices and 
two one-turn helices.
Length=139

 Score = 86.9 bits (216),  Expect = 9e-21, Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 61/185 (33%), Gaps = 48/185 (26%)

Query  387  VFSTAVHGSSLTSFSHNVLTWNAGTLLLLEGAVSESSEHGEGMVTLGAYLPQPWKSAPLS  446
            ++ST+  GSS  +F   +      TLL+++                GA+  QPWK     
Sbjct  2    LYSTSRDGSSYQTFLEKI-DNKGPTLLIIK---------DNDGYIFGAFASQPWK-----  46

Query  447  HSSTKPSDSSALPCLFELSPKHQLLQGNPSPSVQKPNAPVAYF-STSTGIAIGCQIPPPS  505
              S K         LF LSP+    +     +        AYF  TS G+  G   P   
Sbjct  47   -VSGKKFYGDGESFLFSLSPQFDPYKWTGKNN--------AYFNCTSDGLGFGGGQP---  94

Query  506  RSQLLTPTPLGAGSLTVDTSLESATFYMSSIGHNGVFLPPATTSMSEETVRKQIDIYTME  565
                          L +D+ LE              F     +   +E    +  I  +E
Sbjct  95   -----------KFDLWIDSDLEFGYSRHC-----ETFGNGQLSGSGQE----RFKIDDVE  134

Query  566  IWGLV  570
            +WGL 
Sbjct  135  VWGLG  139



Lambda      K        H        a         alpha
   0.315    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 809659710


Query= TCONS_00034946

Length=646
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  165     3e-48
CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV. Thi...  130     3e-36
CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II. Thi...  126     1e-35
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  96.8    8e-25
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  57.3    4e-11


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 165 bits (421),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 60/146 (41%), Positives = 84/146 (58%), Gaps = 14/146 (10%)

Query  1    MDSMDLEREKGITIQSAATFCDWIKKGDDGKEEKYHINLIDTPGHIDFTIEVERALRVLD  60
            +D++  ERE+GITI+SAA   +          + Y INLIDTPGH+DF  EV R L   D
Sbjct  44   LDNLPEERERGITIKSAAVSFET---------KDYLINLIDTPGHVDFVKEVIRGLAQAD  94

Query  61   GAVMILCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDRM-GANPFKAVEQINTKL--KI  117
            GA++++ AV GV  QT    R  R+  VP I F+NKMDR+ GA   + VE+++ +L  K 
Sbjct  95   GAILVVDAVEGVMPQTREHLRLARQLGVPIIVFINKMDRVDGAELEEVVEEVSRELLEKY  154

Query  118  PAAAVQVPI--GAEDEFEGVVDLIRM  141
                  VP+  G+  + EGV  L+  
Sbjct  155  GEDGEFVPVVPGSALKGEGVQTLLDA  180


>CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV.  This domain 
is found in elongation factor G, elongation factor 2 and 
some tetracycline resistance proteins and adopts a ribosomal 
protein S5 domain 2-like fold.
Length=121

 Score = 130 bits (328),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 55/121 (45%), Positives = 79/121 (65%), Gaps = 1/121 (1%)

Query  436  PQVAYRETIGNRVE-FDHLLKKQSGGPGEYARVVGWMEPTGKLEDNKFEEQIVGGSISEK  494
            PQVAYRETI   V+   +  KKQSGG G+YARV+  +EP      N+F ++ VGG I ++
Sbjct  1    PQVAYRETIRKPVKERAYKHKKQSGGDGQYARVILRIEPLPPGSGNEFVDETVGGQIPKE  60

Query  495  FLFACEKGFNLACEKGPLIGHKVLGTKMVINDGATHMTDSSEMSFKNATQQAFRKAFMES  554
            F+ A EKGF  A ++GPL G  V   K+ + DG+ H  DSSE +F  A ++AFR+A +++
Sbjct  61   FIPAVEKGFQEAMKEGPLAGEPVTDVKVTLLDGSYHEVDSSEAAFIPAARRAFREALLKA  120

Query  555  N  555
            +
Sbjct  121  S  121


>CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II.  This domain 
is found in Elongation Factor G. It shares a similar structure 
with domain V (pfam00679).
Length=75

 Score = 126 bits (319),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 38/75 (51%), Positives = 53/75 (71%), Gaps = 0/75 (0%)

Query  361  VPEPVISLSIKPKNSKDSANFSKAMARFQREDPTFRVSYNAESEETLISGMGELHLDIYI  420
             PEPVIS++I+PK   D    SKA+ R   EDPT RV  + E+ ET++SGMGELHL+I +
Sbjct  1    FPEPVISVAIEPKTKGDEDKLSKALNRLLEEDPTLRVERDEETGETILSGMGELHLEIVV  60

Query  421  ERMRREYRVDCVTGP  435
            +R++R+Y V+   GP
Sbjct  61   DRLKRKYGVEVELGP  75


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 96.8 bits (242),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 33/85 (39%), Positives = 49/85 (58%), Gaps = 1/85 (1%)

Query  558  VLEPMMKIAVTAPGEFQGDVISLLNKRNATINDTET-GVDEFTVYADCSLNGMFGFSTHL  616
            +LEP+ K+ +  P E+ GDVIS LN R   I D +        + A+  L  +FGF+T L
Sbjct  2    LLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGGRVVIEAEVPLAELFGFATEL  61

Query  617  RAATQGKGEFTMEFSHYEKAQPQLQ  641
            R+ T+G+G F+MEFS Y+     + 
Sbjct  62   RSLTKGRGSFSMEFSGYQPVPGDIL  86


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 57.3 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 23/73 (32%), Positives = 32/73 (44%), Gaps = 6/73 (8%)

Query  282  GQLTYIRVYQGTLRKGANVFNARNNKK-----VKVPRIVRMHSNEMEEVSEIGAGEICAV  336
            G +   RV  GTL+KG  V    N         +V  ++  H+   E V+   AG I A 
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAG  60

Query  337  FGVDCA-SGDTFT  348
             G++    GDT T
Sbjct  61   VGLEDIRVGDTLT  73



Lambda      K        H        a         alpha
   0.317    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 815558870


Query= TCONS_00030399

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00030400

Length=646
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding ...  165     3e-48
CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV. Thi...  130     3e-36
CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II. Thi...  126     1e-35
CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus. This...  96.8    8e-25
CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2....  57.3    4e-11


>CDD:425418 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
 This domain contains a P-loop motif, also found in several 
other families such as pfam00071, pfam00025 and pfam00063. 
Elongation factor Tu consists of three structural domains, this 
plus two C-terminal beta barrel domains.
Length=187

 Score = 165 bits (421),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 60/146 (41%), Positives = 84/146 (58%), Gaps = 14/146 (10%)

Query  1    MDSMDLEREKGITIQSAATFCDWIKKGDDGKEEKYHINLIDTPGHIDFTIEVERALRVLD  60
            +D++  ERE+GITI+SAA   +          + Y INLIDTPGH+DF  EV R L   D
Sbjct  44   LDNLPEERERGITIKSAAVSFET---------KDYLINLIDTPGHVDFVKEVIRGLAQAD  94

Query  61   GAVMILCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDRM-GANPFKAVEQINTKL--KI  117
            GA++++ AV GV  QT    R  R+  VP I F+NKMDR+ GA   + VE+++ +L  K 
Sbjct  95   GAILVVDAVEGVMPQTREHLRLARQLGVPIIVFINKMDRVDGAELEEVVEEVSRELLEKY  154

Query  118  PAAAVQVPI--GAEDEFEGVVDLIRM  141
                  VP+  G+  + EGV  L+  
Sbjct  155  GEDGEFVPVVPGSALKGEGVQTLLDA  180


>CDD:397710 pfam03764, EFG_IV, Elongation factor G, domain IV.  This domain 
is found in elongation factor G, elongation factor 2 and 
some tetracycline resistance proteins and adopts a ribosomal 
protein S5 domain 2-like fold.
Length=121

 Score = 130 bits (328),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 55/121 (45%), Positives = 79/121 (65%), Gaps = 1/121 (1%)

Query  436  PQVAYRETIGNRVE-FDHLLKKQSGGPGEYARVVGWMEPTGKLEDNKFEEQIVGGSISEK  494
            PQVAYRETI   V+   +  KKQSGG G+YARV+  +EP      N+F ++ VGG I ++
Sbjct  1    PQVAYRETIRKPVKERAYKHKKQSGGDGQYARVILRIEPLPPGSGNEFVDETVGGQIPKE  60

Query  495  FLFACEKGFNLACEKGPLIGHKVLGTKMVINDGATHMTDSSEMSFKNATQQAFRKAFMES  554
            F+ A EKGF  A ++GPL G  V   K+ + DG+ H  DSSE +F  A ++AFR+A +++
Sbjct  61   FIPAVEKGFQEAMKEGPLAGEPVTDVKVTLLDGSYHEVDSSEAAFIPAARRAFREALLKA  120

Query  555  N  555
            +
Sbjct  121  S  121


>CDD:464188 pfam14492, EFG_II, Elongation Factor G, domain II.  This domain 
is found in Elongation Factor G. It shares a similar structure 
with domain V (pfam00679).
Length=75

 Score = 126 bits (319),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 38/75 (51%), Positives = 53/75 (71%), Gaps = 0/75 (0%)

Query  361  VPEPVISLSIKPKNSKDSANFSKAMARFQREDPTFRVSYNAESEETLISGMGELHLDIYI  420
             PEPVIS++I+PK   D    SKA+ R   EDPT RV  + E+ ET++SGMGELHL+I +
Sbjct  1    FPEPVISVAIEPKTKGDEDKLSKALNRLLEEDPTLRVERDEETGETILSGMGELHLEIVV  60

Query  421  ERMRREYRVDCVTGP  435
            +R++R+Y V+   GP
Sbjct  61   DRLKRKYGVEVELGP  75


>CDD:425814 pfam00679, EFG_C, Elongation factor G C-terminus.  This domain 
includes the carboxyl terminal regions of Elongation factor 
G, elongation factor 2 and some tetracycline resistance proteins 
and adopt a ferredoxin-like fold.
Length=88

 Score = 96.8 bits (242),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 33/85 (39%), Positives = 49/85 (58%), Gaps = 1/85 (1%)

Query  558  VLEPMMKIAVTAPGEFQGDVISLLNKRNATINDTET-GVDEFTVYADCSLNGMFGFSTHL  616
            +LEP+ K+ +  P E+ GDVIS LN R   I D +        + A+  L  +FGF+T L
Sbjct  2    LLEPIEKVTIDVPEEYVGDVISDLNSRRGEILDMDPDDGGRVVIEAEVPLAELFGFATEL  61

Query  617  RAATQGKGEFTMEFSHYEKAQPQLQ  641
            R+ T+G+G F+MEFS Y+     + 
Sbjct  62   RSLTKGRGSFSMEFSGYQPVPGDIL  86


>CDD:427163 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2.  Elongation 
factor Tu consists of three structural domains, this is 
the second domain. This domain adopts a beta barrel structure. 
This the second domain is involved in binding to charged 
tRNA. This domain is also found in other proteins such as 
elongation factor G and translation initiation factor IF-2. 
This domain is structurally related to pfam03143, and in fact 
has weak sequence matches to this domain.
Length=73

 Score = 57.3 bits (139),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 23/73 (32%), Positives = 32/73 (44%), Gaps = 6/73 (8%)

Query  282  GQLTYIRVYQGTLRKGANVFNARNNKK-----VKVPRIVRMHSNEMEEVSEIGAGEICAV  336
            G +   RV  GTL+KG  V    N         +V  ++  H+   E V+   AG I A 
Sbjct  1    GTVATGRVESGTLKKGDKVRILPNGTGKKKIVTRVTSLLMFHAPLREAVAGDNAGLILAG  60

Query  337  FGVDCA-SGDTFT  348
             G++    GDT T
Sbjct  61   VGLEDIRVGDTLT  73



Lambda      K        H        a         alpha
   0.317    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 815558870


Query= TCONS_00030401

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  225     6e-70
CDD:395467 pfam00585, Thr_dehydrat_C, C-terminal regulatory domai...  92.0    3e-23


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 225 bits (575),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 111/298 (37%), Positives = 149/298 (50%), Gaps = 5/298 (2%)

Query  72   VYDVIQETPLHHAINLSNRLECRVLLKREDLLPVFSFKLRGAYNKMAHLSPEQRWKGVIA  131
            +   I  TPL     LS  L   V LK E L P  SFK RGA N +  L   +  K V+ 
Sbjct  1    ISLGIGPTPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNLLLRLKEGEGGKTVVE  60

Query  132  CSAGNHAQGVAFSARKLKIPATIVMPSGTPAIKHLNVARLGGSVILHGNDFDAAKEEAHR  191
             S+GNH + +A +A +L +  TIV+P   P  K L +  LG  V+L G D+D A   A  
Sbjct  61   ASSGNHGRALAAAAARLGLKVTIVVPEDAPPGKLLLMRALGAEVVLVGGDYDEAVAAARE  120

Query  192  LEKQ-HGLTSIPPFDDPYVIAGQGTIGMEILRQANLEKLEAVFCAVGGGGLVAGIGVYLK  250
            L  +  G   I  +D+P  I G GTIG+EIL Q      +AV   VGGGGL+AGI   LK
Sbjct  121  LAAEGPGAYYINQYDNPLNIEGYGTIGLEILEQLG-GDPDAVVVPVGGGGLIAGIARGLK  179

Query  251  RIAPHVKVIGVEAYDANAMARSLGEGSRVFLREVGLFADGAAVK-TVGEETYRLAREVID  309
             + P V+VIGVE   A A+ARSL  G  V +      ADG  V    G     L  E + 
Sbjct  180  ELGPDVRVIGVEPEGAPALARSLAAGRPVPVPVADTIADGLGVGDEPGALALDLLDEYVG  239

Query  310  DVILVSTDETCAAIKDAFEDTRSIIEPAGALALAGLKKYVSQNPSPDTNRELVAITSG  367
            +V+ VS +E   A++        ++EP+ A ALA LK  ++          +V + +G
Sbjct  240  EVVTVSDEEALEAMRLLARREGIVVEPSSAAALAALKLALAGELKGGDR--VVVVLTG  295


>CDD:395467 pfam00585, Thr_dehydrat_C, C-terminal regulatory domain of Threonine 
dehydratase.  Threonine dehydratases pfam00291 all contain 
a carboxy terminal region. This region may have a regulatory 
role. Some members contain two copies of this region. 
This family is homologous to the pfam01842 domain.
Length=91

 Score = 92.0 bits (229),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query  478  GRCDVK--DERLFMFEFPERPGALAKFLTTLRPNQNISLFHYRNYGGDVGKVLAGIQCPN  535
             R  +    E L   EFPE+PGAL  FL  L    NI+LF YR +G   G VL GI+   
Sbjct  1    ERALLGEGLEALLAVEFPEQPGALLTFLDLLGGRNNITLFEYRKHGDKNGCVLVGIELSQ  60

Query  536  DE-KKDLEAFLNDLGYPFSEQTDSPTYQTFL  565
             E   +    LN LGY + + +D+      L
Sbjct  61   AEDLDEFIERLNKLGYDYEDLSDNEAAYEHL  91


 Score = 83.5 bits (207),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 57/94 (61%), Gaps = 4/94 (4%)

Query  380  ERAALGERKEALLSVKIPEKPGAFANLVEVIL-PQAVTAFSYRYARAESADVLMGISLSA  438
            ERA LGE  EALL+V+ PE+PGA    ++++     +T F YR    ++  VL+GI LS 
Sbjct  1    ERALLGEGLEALLAVEFPEQPGALLTFLDLLGGRNNITLFEYRKHGDKNGCVLVGIELSQ  60

Query  439  LTGREDLAKIMDQLEKAGMPAKDLSDDELAKRHV  472
                EDL + +++L K G   +DLSD+E A  H+
Sbjct  61   ---AEDLDEFIERLNKLGYDYEDLSDNEAAYEHL  91



Lambda      K        H        a         alpha
   0.319    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 709853300


Query= TCONS_00030402

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461361 pfam04588, HIG_1_N, Hypoxia induced protein conserved ...  54.0    1e-11


>CDD:461361 pfam04588, HIG_1_N, Hypoxia induced protein conserved region. 
 This family is found in proteins thought to be involved in 
the response to hypoxia. Family members mostly come from diverse 
eukaryotic organisms however eubacterial members have 
been identified. This region is found at the N-terminus of the 
member proteins which are predicted to be transmembrane.
Length=52

 Score = 54.0 bits (131),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 14/30 (47%), Positives = 20/30 (67%), Gaps = 0/30 (0%)

Query  1   MKAGDSVEMNKMFRARIYAQFFTLVAVVAG  30
           M+ G+S    K+ RAR+ AQ FT+ A+V G
Sbjct  23  MRRGNSGTSQKLMRARVAAQGFTVAALVGG  52



Lambda      K        H        a         alpha
   0.317    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00034949

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461361 pfam04588, HIG_1_N, Hypoxia induced protein conserved ...  54.0    1e-11


>CDD:461361 pfam04588, HIG_1_N, Hypoxia induced protein conserved region. 
 This family is found in proteins thought to be involved in 
the response to hypoxia. Family members mostly come from diverse 
eukaryotic organisms however eubacterial members have 
been identified. This region is found at the N-terminus of the 
member proteins which are predicted to be transmembrane.
Length=52

 Score = 54.0 bits (131),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 14/30 (47%), Positives = 20/30 (67%), Gaps = 0/30 (0%)

Query  1   MKAGDSVEMNKMFRARIYAQFFTLVAVVAG  30
           M+ G+S    K+ RAR+ AQ FT+ A+V G
Sbjct  23  MRRGNSGTSQKLMRARVAAQGFTVAALVGG  52



Lambda      K        H        a         alpha
   0.317    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00034948

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461361 pfam04588, HIG_1_N, Hypoxia induced protein conserved ...  54.0    1e-11


>CDD:461361 pfam04588, HIG_1_N, Hypoxia induced protein conserved region. 
 This family is found in proteins thought to be involved in 
the response to hypoxia. Family members mostly come from diverse 
eukaryotic organisms however eubacterial members have 
been identified. This region is found at the N-terminus of the 
member proteins which are predicted to be transmembrane.
Length=52

 Score = 54.0 bits (131),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 14/30 (47%), Positives = 20/30 (67%), Gaps = 0/30 (0%)

Query  1   MKAGDSVEMNKMFRARIYAQFFTLVAVVAG  30
           M+ G+S    K+ RAR+ AQ FT+ A+V G
Sbjct  23  MRRGNSGTSQKLMRARVAAQGFTVAALVGG  52



Lambda      K        H        a         alpha
   0.317    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00034950

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461361 pfam04588, HIG_1_N, Hypoxia induced protein conserved ...  54.0    1e-11


>CDD:461361 pfam04588, HIG_1_N, Hypoxia induced protein conserved region. 
 This family is found in proteins thought to be involved in 
the response to hypoxia. Family members mostly come from diverse 
eukaryotic organisms however eubacterial members have 
been identified. This region is found at the N-terminus of the 
member proteins which are predicted to be transmembrane.
Length=52

 Score = 54.0 bits (131),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 14/30 (47%), Positives = 20/30 (67%), Gaps = 0/30 (0%)

Query  1   MKAGDSVEMNKMFRARIYAQFFTLVAVVAG  30
           M+ G+S    K+ RAR+ AQ FT+ A+V G
Sbjct  23  MRRGNSGTSQKLMRARVAAQGFTVAALVGG  52



Lambda      K        H        a         alpha
   0.317    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00034951

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  225     6e-70
CDD:395467 pfam00585, Thr_dehydrat_C, C-terminal regulatory domai...  92.0    3e-23


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 225 bits (575),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 111/298 (37%), Positives = 149/298 (50%), Gaps = 5/298 (2%)

Query  72   VYDVIQETPLHHAINLSNRLECRVLLKREDLLPVFSFKLRGAYNKMAHLSPEQRWKGVIA  131
            +   I  TPL     LS  L   V LK E L P  SFK RGA N +  L   +  K V+ 
Sbjct  1    ISLGIGPTPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNLLLRLKEGEGGKTVVE  60

Query  132  CSAGNHAQGVAFSARKLKIPATIVMPSGTPAIKHLNVARLGGSVILHGNDFDAAKEEAHR  191
             S+GNH + +A +A +L +  TIV+P   P  K L +  LG  V+L G D+D A   A  
Sbjct  61   ASSGNHGRALAAAAARLGLKVTIVVPEDAPPGKLLLMRALGAEVVLVGGDYDEAVAAARE  120

Query  192  LEKQ-HGLTSIPPFDDPYVIAGQGTIGMEILRQANLEKLEAVFCAVGGGGLVAGIGVYLK  250
            L  +  G   I  +D+P  I G GTIG+EIL Q      +AV   VGGGGL+AGI   LK
Sbjct  121  LAAEGPGAYYINQYDNPLNIEGYGTIGLEILEQLG-GDPDAVVVPVGGGGLIAGIARGLK  179

Query  251  RIAPHVKVIGVEAYDANAMARSLGEGSRVFLREVGLFADGAAVK-TVGEETYRLAREVID  309
             + P V+VIGVE   A A+ARSL  G  V +      ADG  V    G     L  E + 
Sbjct  180  ELGPDVRVIGVEPEGAPALARSLAAGRPVPVPVADTIADGLGVGDEPGALALDLLDEYVG  239

Query  310  DVILVSTDETCAAIKDAFEDTRSIIEPAGALALAGLKKYVSQNPSPDTNRELVAITSG  367
            +V+ VS +E   A++        ++EP+ A ALA LK  ++          +V + +G
Sbjct  240  EVVTVSDEEALEAMRLLARREGIVVEPSSAAALAALKLALAGELKGGDR--VVVVLTG  295


>CDD:395467 pfam00585, Thr_dehydrat_C, C-terminal regulatory domain of Threonine 
dehydratase.  Threonine dehydratases pfam00291 all contain 
a carboxy terminal region. This region may have a regulatory 
role. Some members contain two copies of this region. 
This family is homologous to the pfam01842 domain.
Length=91

 Score = 92.0 bits (229),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query  478  GRCDVK--DERLFMFEFPERPGALAKFLTTLRPNQNISLFHYRNYGGDVGKVLAGIQCPN  535
             R  +    E L   EFPE+PGAL  FL  L    NI+LF YR +G   G VL GI+   
Sbjct  1    ERALLGEGLEALLAVEFPEQPGALLTFLDLLGGRNNITLFEYRKHGDKNGCVLVGIELSQ  60

Query  536  DE-KKDLEAFLNDLGYPFSEQTDSPTYQTFL  565
             E   +    LN LGY + + +D+      L
Sbjct  61   AEDLDEFIERLNKLGYDYEDLSDNEAAYEHL  91


 Score = 83.5 bits (207),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 57/94 (61%), Gaps = 4/94 (4%)

Query  380  ERAALGERKEALLSVKIPEKPGAFANLVEVIL-PQAVTAFSYRYARAESADVLMGISLSA  438
            ERA LGE  EALL+V+ PE+PGA    ++++     +T F YR    ++  VL+GI LS 
Sbjct  1    ERALLGEGLEALLAVEFPEQPGALLTFLDLLGGRNNITLFEYRKHGDKNGCVLVGIELSQ  60

Query  439  LTGREDLAKIMDQLEKAGMPAKDLSDDELAKRHV  472
                EDL + +++L K G   +DLSD+E A  H+
Sbjct  61   ---AEDLDEFIERLNKLGYDYEDLSDNEAAYEHL  91



Lambda      K        H        a         alpha
   0.319    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 709853300


Query= TCONS_00030405

Length=412
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  133     8e-37
CDD:395467 pfam00585, Thr_dehydrat_C, C-terminal regulatory domai...  90.4    5e-23


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 133 bits (338),  Expect = 8e-37, Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 106/214 (50%), Gaps = 5/214 (2%)

Query  1    MPSGTPAIKHLNVARLGGSVILHGNDFDAAKEEAHRLEKQ-HGLTSIPPFDDPYVIAGQG  59
            +P   P  K L +  LG  V+L G D+D A   A  L  +  G   I  +D+P  I G G
Sbjct  85   VPEDAPPGKLLLMRALGAEVVLVGGDYDEAVAAARELAAEGPGAYYINQYDNPLNIEGYG  144

Query  60   TIGMEILRQANLEKLEAVFCAVGGGGLVAGIGVYLKRIAPHVKVIGVEAYDANAMARSLG  119
            TIG+EIL Q      +AV   VGGGGL+AGI   LK + P V+VIGVE   A A+ARSL 
Sbjct  145  TIGLEILEQLG-GDPDAVVVPVGGGGLIAGIARGLKELGPDVRVIGVEPEGAPALARSLA  203

Query  120  EGSRVFLREVGLFADGAAVK-TVGEETYRLAREVIDDVILVSTDETCAAIKDAFEDTRSI  178
             G  V +      ADG  V    G     L  E + +V+ VS +E   A++        +
Sbjct  204  AGRPVPVPVADTIADGLGVGDEPGALALDLLDEYVGEVVTVSDEEALEAMRLLARREGIV  263

Query  179  IEPAGALALAGLKKYVSQNPSPDTNRELVAITSG  212
            +EP+ A ALA LK  ++          +V + +G
Sbjct  264  VEPSSAAALAALKLALAGELKGGDR--VVVVLTG  295


>CDD:395467 pfam00585, Thr_dehydrat_C, C-terminal regulatory domain of Threonine 
dehydratase.  Threonine dehydratases pfam00291 all contain 
a carboxy terminal region. This region may have a regulatory 
role. Some members contain two copies of this region. 
This family is homologous to the pfam01842 domain.
Length=91

 Score = 90.4 bits (225),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query  323  GRCDVK--DERLFMFEFPERPGALAKFLTTLRPNQNISLFHYRNYGGDVGKVLAGIQCPN  380
             R  +    E L   EFPE+PGAL  FL  L    NI+LF YR +G   G VL GI+   
Sbjct  1    ERALLGEGLEALLAVEFPEQPGALLTFLDLLGGRNNITLFEYRKHGDKNGCVLVGIELSQ  60

Query  381  DE-KKDLEAFLNDLGYPFSEQTDSPTYQTFL  410
             E   +    LN LGY + + +D+      L
Sbjct  61   AEDLDEFIERLNKLGYDYEDLSDNEAAYEHL  91


 Score = 81.9 bits (203),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 57/94 (61%), Gaps = 4/94 (4%)

Query  225  ERAALGERKEALLSVKIPEKPGAFANLVEVIL-PQAVTAFSYRYARAESADVLMGISLSA  283
            ERA LGE  EALL+V+ PE+PGA    ++++     +T F YR    ++  VL+GI LS 
Sbjct  1    ERALLGEGLEALLAVEFPEQPGALLTFLDLLGGRNNITLFEYRKHGDKNGCVLVGIELSQ  60

Query  284  LTGREDLAKIMDQLEKAGMPAKDLSDDELAKRHV  317
                EDL + +++L K G   +DLSD+E A  H+
Sbjct  61   ---AEDLDEFIERLNKLGYDYEDLSDNEAAYEHL  91



Lambda      K        H        a         alpha
   0.319    0.137    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 501729466


Query= TCONS_00030403

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  68.1    6e-15


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 68.1 bits (167),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query  72   VYDVIQETPLHHAINLSNRLECRVLLKREDLLPVFSFKLRGAYNKMAHLSPEQRWKGVIA  131
            +   I  TPL     LS  L   V LK E L P  SFK RGA N +  L   +  K V+ 
Sbjct  1    ISLGIGPTPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNLLLRLKEGEGGKTVVE  60

Query  132  CSAG---QSLSM  140
             S+G   ++L+ 
Sbjct  61   ASSGNHGRALAA  72



Lambda      K        H        a         alpha
   0.316    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00034952

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  225     6e-70
CDD:395467 pfam00585, Thr_dehydrat_C, C-terminal regulatory domai...  92.0    3e-23


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 225 bits (575),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 111/298 (37%), Positives = 149/298 (50%), Gaps = 5/298 (2%)

Query  72   VYDVIQETPLHHAINLSNRLECRVLLKREDLLPVFSFKLRGAYNKMAHLSPEQRWKGVIA  131
            +   I  TPL     LS  L   V LK E L P  SFK RGA N +  L   +  K V+ 
Sbjct  1    ISLGIGPTPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNLLLRLKEGEGGKTVVE  60

Query  132  CSAGNHAQGVAFSARKLKIPATIVMPSGTPAIKHLNVARLGGSVILHGNDFDAAKEEAHR  191
             S+GNH + +A +A +L +  TIV+P   P  K L +  LG  V+L G D+D A   A  
Sbjct  61   ASSGNHGRALAAAAARLGLKVTIVVPEDAPPGKLLLMRALGAEVVLVGGDYDEAVAAARE  120

Query  192  LEKQ-HGLTSIPPFDDPYVIAGQGTIGMEILRQANLEKLEAVFCAVGGGGLVAGIGVYLK  250
            L  +  G   I  +D+P  I G GTIG+EIL Q      +AV   VGGGGL+AGI   LK
Sbjct  121  LAAEGPGAYYINQYDNPLNIEGYGTIGLEILEQLG-GDPDAVVVPVGGGGLIAGIARGLK  179

Query  251  RIAPHVKVIGVEAYDANAMARSLGEGSRVFLREVGLFADGAAVK-TVGEETYRLAREVID  309
             + P V+VIGVE   A A+ARSL  G  V +      ADG  V    G     L  E + 
Sbjct  180  ELGPDVRVIGVEPEGAPALARSLAAGRPVPVPVADTIADGLGVGDEPGALALDLLDEYVG  239

Query  310  DVILVSTDETCAAIKDAFEDTRSIIEPAGALALAGLKKYVSQNPSPDTNRELVAITSG  367
            +V+ VS +E   A++        ++EP+ A ALA LK  ++          +V + +G
Sbjct  240  EVVTVSDEEALEAMRLLARREGIVVEPSSAAALAALKLALAGELKGGDR--VVVVLTG  295


>CDD:395467 pfam00585, Thr_dehydrat_C, C-terminal regulatory domain of Threonine 
dehydratase.  Threonine dehydratases pfam00291 all contain 
a carboxy terminal region. This region may have a regulatory 
role. Some members contain two copies of this region. 
This family is homologous to the pfam01842 domain.
Length=91

 Score = 92.0 bits (229),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query  478  GRCDVK--DERLFMFEFPERPGALAKFLTTLRPNQNISLFHYRNYGGDVGKVLAGIQCPN  535
             R  +    E L   EFPE+PGAL  FL  L    NI+LF YR +G   G VL GI+   
Sbjct  1    ERALLGEGLEALLAVEFPEQPGALLTFLDLLGGRNNITLFEYRKHGDKNGCVLVGIELSQ  60

Query  536  DE-KKDLEAFLNDLGYPFSEQTDSPTYQTFL  565
             E   +    LN LGY + + +D+      L
Sbjct  61   AEDLDEFIERLNKLGYDYEDLSDNEAAYEHL  91


 Score = 83.5 bits (207),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 57/94 (61%), Gaps = 4/94 (4%)

Query  380  ERAALGERKEALLSVKIPEKPGAFANLVEVIL-PQAVTAFSYRYARAESADVLMGISLSA  438
            ERA LGE  EALL+V+ PE+PGA    ++++     +T F YR    ++  VL+GI LS 
Sbjct  1    ERALLGEGLEALLAVEFPEQPGALLTFLDLLGGRNNITLFEYRKHGDKNGCVLVGIELSQ  60

Query  439  LTGREDLAKIMDQLEKAGMPAKDLSDDELAKRHV  472
                EDL + +++L K G   +DLSD+E A  H+
Sbjct  61   ---AEDLDEFIERLNKLGYDYEDLSDNEAAYEHL  91



Lambda      K        H        a         alpha
   0.319    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 709853300


Query= TCONS_00030404

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  225     6e-70
CDD:395467 pfam00585, Thr_dehydrat_C, C-terminal regulatory domai...  92.0    3e-23


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 225 bits (575),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 111/298 (37%), Positives = 149/298 (50%), Gaps = 5/298 (2%)

Query  72   VYDVIQETPLHHAINLSNRLECRVLLKREDLLPVFSFKLRGAYNKMAHLSPEQRWKGVIA  131
            +   I  TPL     LS  L   V LK E L P  SFK RGA N +  L   +  K V+ 
Sbjct  1    ISLGIGPTPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNLLLRLKEGEGGKTVVE  60

Query  132  CSAGNHAQGVAFSARKLKIPATIVMPSGTPAIKHLNVARLGGSVILHGNDFDAAKEEAHR  191
             S+GNH + +A +A +L +  TIV+P   P  K L +  LG  V+L G D+D A   A  
Sbjct  61   ASSGNHGRALAAAAARLGLKVTIVVPEDAPPGKLLLMRALGAEVVLVGGDYDEAVAAARE  120

Query  192  LEKQ-HGLTSIPPFDDPYVIAGQGTIGMEILRQANLEKLEAVFCAVGGGGLVAGIGVYLK  250
            L  +  G   I  +D+P  I G GTIG+EIL Q      +AV   VGGGGL+AGI   LK
Sbjct  121  LAAEGPGAYYINQYDNPLNIEGYGTIGLEILEQLG-GDPDAVVVPVGGGGLIAGIARGLK  179

Query  251  RIAPHVKVIGVEAYDANAMARSLGEGSRVFLREVGLFADGAAVK-TVGEETYRLAREVID  309
             + P V+VIGVE   A A+ARSL  G  V +      ADG  V    G     L  E + 
Sbjct  180  ELGPDVRVIGVEPEGAPALARSLAAGRPVPVPVADTIADGLGVGDEPGALALDLLDEYVG  239

Query  310  DVILVSTDETCAAIKDAFEDTRSIIEPAGALALAGLKKYVSQNPSPDTNRELVAITSG  367
            +V+ VS +E   A++        ++EP+ A ALA LK  ++          +V + +G
Sbjct  240  EVVTVSDEEALEAMRLLARREGIVVEPSSAAALAALKLALAGELKGGDR--VVVVLTG  295


>CDD:395467 pfam00585, Thr_dehydrat_C, C-terminal regulatory domain of Threonine 
dehydratase.  Threonine dehydratases pfam00291 all contain 
a carboxy terminal region. This region may have a regulatory 
role. Some members contain two copies of this region. 
This family is homologous to the pfam01842 domain.
Length=91

 Score = 92.0 bits (229),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query  478  GRCDVK--DERLFMFEFPERPGALAKFLTTLRPNQNISLFHYRNYGGDVGKVLAGIQCPN  535
             R  +    E L   EFPE+PGAL  FL  L    NI+LF YR +G   G VL GI+   
Sbjct  1    ERALLGEGLEALLAVEFPEQPGALLTFLDLLGGRNNITLFEYRKHGDKNGCVLVGIELSQ  60

Query  536  DE-KKDLEAFLNDLGYPFSEQTDSPTYQTFL  565
             E   +    LN LGY + + +D+      L
Sbjct  61   AEDLDEFIERLNKLGYDYEDLSDNEAAYEHL  91


 Score = 83.5 bits (207),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 57/94 (61%), Gaps = 4/94 (4%)

Query  380  ERAALGERKEALLSVKIPEKPGAFANLVEVIL-PQAVTAFSYRYARAESADVLMGISLSA  438
            ERA LGE  EALL+V+ PE+PGA    ++++     +T F YR    ++  VL+GI LS 
Sbjct  1    ERALLGEGLEALLAVEFPEQPGALLTFLDLLGGRNNITLFEYRKHGDKNGCVLVGIELSQ  60

Query  439  LTGREDLAKIMDQLEKAGMPAKDLSDDELAKRHV  472
                EDL + +++L K G   +DLSD+E A  H+
Sbjct  61   ---AEDLDEFIERLNKLGYDYEDLSDNEAAYEHL  91



Lambda      K        H        a         alpha
   0.319    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 709853300


Query= TCONS_00030406

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  225     6e-70
CDD:395467 pfam00585, Thr_dehydrat_C, C-terminal regulatory domai...  92.0    3e-23


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 225 bits (575),  Expect = 6e-70, Method: Composition-based stats.
 Identities = 111/298 (37%), Positives = 149/298 (50%), Gaps = 5/298 (2%)

Query  72   VYDVIQETPLHHAINLSNRLECRVLLKREDLLPVFSFKLRGAYNKMAHLSPEQRWKGVIA  131
            +   I  TPL     LS  L   V LK E L P  SFK RGA N +  L   +  K V+ 
Sbjct  1    ISLGIGPTPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNLLLRLKEGEGGKTVVE  60

Query  132  CSAGNHAQGVAFSARKLKIPATIVMPSGTPAIKHLNVARLGGSVILHGNDFDAAKEEAHR  191
             S+GNH + +A +A +L +  TIV+P   P  K L +  LG  V+L G D+D A   A  
Sbjct  61   ASSGNHGRALAAAAARLGLKVTIVVPEDAPPGKLLLMRALGAEVVLVGGDYDEAVAAARE  120

Query  192  LEKQ-HGLTSIPPFDDPYVIAGQGTIGMEILRQANLEKLEAVFCAVGGGGLVAGIGVYLK  250
            L  +  G   I  +D+P  I G GTIG+EIL Q      +AV   VGGGGL+AGI   LK
Sbjct  121  LAAEGPGAYYINQYDNPLNIEGYGTIGLEILEQLG-GDPDAVVVPVGGGGLIAGIARGLK  179

Query  251  RIAPHVKVIGVEAYDANAMARSLGEGSRVFLREVGLFADGAAVK-TVGEETYRLAREVID  309
             + P V+VIGVE   A A+ARSL  G  V +      ADG  V    G     L  E + 
Sbjct  180  ELGPDVRVIGVEPEGAPALARSLAAGRPVPVPVADTIADGLGVGDEPGALALDLLDEYVG  239

Query  310  DVILVSTDETCAAIKDAFEDTRSIIEPAGALALAGLKKYVSQNPSPDTNRELVAITSG  367
            +V+ VS +E   A++        ++EP+ A ALA LK  ++          +V + +G
Sbjct  240  EVVTVSDEEALEAMRLLARREGIVVEPSSAAALAALKLALAGELKGGDR--VVVVLTG  295


>CDD:395467 pfam00585, Thr_dehydrat_C, C-terminal regulatory domain of Threonine 
dehydratase.  Threonine dehydratases pfam00291 all contain 
a carboxy terminal region. This region may have a regulatory 
role. Some members contain two copies of this region. 
This family is homologous to the pfam01842 domain.
Length=91

 Score = 92.0 bits (229),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query  478  GRCDVK--DERLFMFEFPERPGALAKFLTTLRPNQNISLFHYRNYGGDVGKVLAGIQCPN  535
             R  +    E L   EFPE+PGAL  FL  L    NI+LF YR +G   G VL GI+   
Sbjct  1    ERALLGEGLEALLAVEFPEQPGALLTFLDLLGGRNNITLFEYRKHGDKNGCVLVGIELSQ  60

Query  536  DE-KKDLEAFLNDLGYPFSEQTDSPTYQTFL  565
             E   +    LN LGY + + +D+      L
Sbjct  61   AEDLDEFIERLNKLGYDYEDLSDNEAAYEHL  91


 Score = 83.5 bits (207),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 57/94 (61%), Gaps = 4/94 (4%)

Query  380  ERAALGERKEALLSVKIPEKPGAFANLVEVIL-PQAVTAFSYRYARAESADVLMGISLSA  438
            ERA LGE  EALL+V+ PE+PGA    ++++     +T F YR    ++  VL+GI LS 
Sbjct  1    ERALLGEGLEALLAVEFPEQPGALLTFLDLLGGRNNITLFEYRKHGDKNGCVLVGIELSQ  60

Query  439  LTGREDLAKIMDQLEKAGMPAKDLSDDELAKRHV  472
                EDL + +++L K G   +DLSD+E A  H+
Sbjct  61   ---AEDLDEFIERLNKLGYDYEDLSDNEAAYEHL  91



Lambda      K        H        a         alpha
   0.319    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 709853300


Query= TCONS_00030407

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00030408

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0787    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00034954

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00034955

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  452     5e-159


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 452 bits (1166),  Expect = 5e-159, Method: Composition-based stats.
 Identities = 164/379 (43%), Positives = 230/379 (61%), Gaps = 5/379 (1%)

Query  2    LRRWYQLMMDNSEDLATLITWENGKPLADAKGEVNYAASFFEWFSEEAPRIYGDTIPASV  61
            LR+   L+ +  ++LA L T ENGKPLA+A+GEV+ A     +++  A R+ G+T+P+  
Sbjct  57   LRKAADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSD-  115

Query  62   PGNRVMTLKQPVGVCGLITPWNFPAAMITRKVGPALAAGCTVVCKTPGETPFTANAIAEL  121
            PG    T ++P+GV G ITPWNFP  +   K+ PALAAG TVV K    TP TA  +AEL
Sbjct  116  PGRLAYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAEL  175

Query  122  AHRAGIPKGVVNMVTSLKNTPEVGEVITTHPEVRKVSFTGSTNVGRLLMKQASSTIKKVS  181
               AG+P GV+N+VT   +  EVGE +  HP+VRKVSFTGST VGR + + A+  +K+V+
Sbjct  176  FEEAGLPAGVLNVVTG--SGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVT  233

Query  182  WELGGNAPFIVFDDVDDLDAAVAGAIASKFRSSGQTCVCANRIYVQRGVYDEFVKRFAAK  241
             ELGG  P IV +D D   A    A+   F ++GQ C   +R+ V   +YDEFV++    
Sbjct  234  LELGGKNPLIVLEDADLDAAVE-AAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEA  292

Query  242  VKNFKLGSGFGDGVTHGPLIHERATEKVDQHVKDAQAKGAKLVAGGQKVPELGPNFYELT  301
             K  K+G         GPLI +   E+V ++V+DA+ +GAKL+ GG+   + G  F E T
Sbjct  293  AKKLKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLDNG-YFVEPT  351

Query  302  VLAEMSKDMLMASEETFGPVAGIFPFETEKEVVELANRAEVGLAGYFFSGNVKRIFRVAE  361
            VLA ++ DM +A EE FGPV  +  F+ E+E +E+AN  E GLA   F+ +++R  RVA 
Sbjct  352  VLANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVAR  411

Query  362  ALEVGMVGVNTGLISDVAT  380
             LE GMV +N     D   
Sbjct  412  RLEAGMVWINDYTTGDADG  430



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00034956

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  452     5e-159


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 452 bits (1166),  Expect = 5e-159, Method: Composition-based stats.
 Identities = 164/379 (43%), Positives = 230/379 (61%), Gaps = 5/379 (1%)

Query  2    LRRWYQLMMDNSEDLATLITWENGKPLADAKGEVNYAASFFEWFSEEAPRIYGDTIPASV  61
            LR+   L+ +  ++LA L T ENGKPLA+A+GEV+ A     +++  A R+ G+T+P+  
Sbjct  57   LRKAADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSD-  115

Query  62   PGNRVMTLKQPVGVCGLITPWNFPAAMITRKVGPALAAGCTVVCKTPGETPFTANAIAEL  121
            PG    T ++P+GV G ITPWNFP  +   K+ PALAAG TVV K    TP TA  +AEL
Sbjct  116  PGRLAYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAEL  175

Query  122  AHRAGIPKGVVNMVTSLKNTPEVGEVITTHPEVRKVSFTGSTNVGRLLMKQASSTIKKVS  181
               AG+P GV+N+VT   +  EVGE +  HP+VRKVSFTGST VGR + + A+  +K+V+
Sbjct  176  FEEAGLPAGVLNVVTG--SGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVT  233

Query  182  WELGGNAPFIVFDDVDDLDAAVAGAIASKFRSSGQTCVCANRIYVQRGVYDEFVKRFAAK  241
             ELGG  P IV +D D   A    A+   F ++GQ C   +R+ V   +YDEFV++    
Sbjct  234  LELGGKNPLIVLEDADLDAAVE-AAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEA  292

Query  242  VKNFKLGSGFGDGVTHGPLIHERATEKVDQHVKDAQAKGAKLVAGGQKVPELGPNFYELT  301
             K  K+G         GPLI +   E+V ++V+DA+ +GAKL+ GG+   + G  F E T
Sbjct  293  AKKLKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLDNG-YFVEPT  351

Query  302  VLAEMSKDMLMASEETFGPVAGIFPFETEKEVVELANRAEVGLAGYFFSGNVKRIFRVAE  361
            VLA ++ DM +A EE FGPV  +  F+ E+E +E+AN  E GLA   F+ +++R  RVA 
Sbjct  352  VLANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVAR  411

Query  362  ALEVGMVGVNTGLISDVAT  380
             LE GMV +N     D   
Sbjct  412  RLEAGMVWINDYTTGDADG  430



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00030410

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  452     5e-159


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 452 bits (1166),  Expect = 5e-159, Method: Composition-based stats.
 Identities = 164/379 (43%), Positives = 230/379 (61%), Gaps = 5/379 (1%)

Query  2    LRRWYQLMMDNSEDLATLITWENGKPLADAKGEVNYAASFFEWFSEEAPRIYGDTIPASV  61
            LR+   L+ +  ++LA L T ENGKPLA+A+GEV+ A     +++  A R+ G+T+P+  
Sbjct  57   LRKAADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSD-  115

Query  62   PGNRVMTLKQPVGVCGLITPWNFPAAMITRKVGPALAAGCTVVCKTPGETPFTANAIAEL  121
            PG    T ++P+GV G ITPWNFP  +   K+ PALAAG TVV K    TP TA  +AEL
Sbjct  116  PGRLAYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAEL  175

Query  122  AHRAGIPKGVVNMVTSLKNTPEVGEVITTHPEVRKVSFTGSTNVGRLLMKQASSTIKKVS  181
               AG+P GV+N+VT   +  EVGE +  HP+VRKVSFTGST VGR + + A+  +K+V+
Sbjct  176  FEEAGLPAGVLNVVTG--SGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVT  233

Query  182  WELGGNAPFIVFDDVDDLDAAVAGAIASKFRSSGQTCVCANRIYVQRGVYDEFVKRFAAK  241
             ELGG  P IV +D D   A    A+   F ++GQ C   +R+ V   +YDEFV++    
Sbjct  234  LELGGKNPLIVLEDADLDAAVE-AAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEA  292

Query  242  VKNFKLGSGFGDGVTHGPLIHERATEKVDQHVKDAQAKGAKLVAGGQKVPELGPNFYELT  301
             K  K+G         GPLI +   E+V ++V+DA+ +GAKL+ GG+   + G  F E T
Sbjct  293  AKKLKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLDNG-YFVEPT  351

Query  302  VLAEMSKDMLMASEETFGPVAGIFPFETEKEVVELANRAEVGLAGYFFSGNVKRIFRVAE  361
            VLA ++ DM +A EE FGPV  +  F+ E+E +E+AN  E GLA   F+ +++R  RVA 
Sbjct  352  VLANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVAR  411

Query  362  ALEVGMVGVNTGLISDVAT  380
             LE GMV +N     D   
Sbjct  412  RLEAGMVWINDYTTGDADG  430



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00030413

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  452     5e-159


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 452 bits (1166),  Expect = 5e-159, Method: Composition-based stats.
 Identities = 164/379 (43%), Positives = 230/379 (61%), Gaps = 5/379 (1%)

Query  2    LRRWYQLMMDNSEDLATLITWENGKPLADAKGEVNYAASFFEWFSEEAPRIYGDTIPASV  61
            LR+   L+ +  ++LA L T ENGKPLA+A+GEV+ A     +++  A R+ G+T+P+  
Sbjct  57   LRKAADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSD-  115

Query  62   PGNRVMTLKQPVGVCGLITPWNFPAAMITRKVGPALAAGCTVVCKTPGETPFTANAIAEL  121
            PG    T ++P+GV G ITPWNFP  +   K+ PALAAG TVV K    TP TA  +AEL
Sbjct  116  PGRLAYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAEL  175

Query  122  AHRAGIPKGVVNMVTSLKNTPEVGEVITTHPEVRKVSFTGSTNVGRLLMKQASSTIKKVS  181
               AG+P GV+N+VT   +  EVGE +  HP+VRKVSFTGST VGR + + A+  +K+V+
Sbjct  176  FEEAGLPAGVLNVVTG--SGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVT  233

Query  182  WELGGNAPFIVFDDVDDLDAAVAGAIASKFRSSGQTCVCANRIYVQRGVYDEFVKRFAAK  241
             ELGG  P IV +D D   A    A+   F ++GQ C   +R+ V   +YDEFV++    
Sbjct  234  LELGGKNPLIVLEDADLDAAVE-AAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEA  292

Query  242  VKNFKLGSGFGDGVTHGPLIHERATEKVDQHVKDAQAKGAKLVAGGQKVPELGPNFYELT  301
             K  K+G         GPLI +   E+V ++V+DA+ +GAKL+ GG+   + G  F E T
Sbjct  293  AKKLKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLDNG-YFVEPT  351

Query  302  VLAEMSKDMLMASEETFGPVAGIFPFETEKEVVELANRAEVGLAGYFFSGNVKRIFRVAE  361
            VLA ++ DM +A EE FGPV  +  F+ E+E +E+AN  E GLA   F+ +++R  RVA 
Sbjct  352  VLANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVAR  411

Query  362  ALEVGMVGVNTGLISDVAT  380
             LE GMV +N     D   
Sbjct  412  RLEAGMVWINDYTTGDADG  430



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00030411

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  452     5e-159


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 452 bits (1166),  Expect = 5e-159, Method: Composition-based stats.
 Identities = 164/379 (43%), Positives = 230/379 (61%), Gaps = 5/379 (1%)

Query  2    LRRWYQLMMDNSEDLATLITWENGKPLADAKGEVNYAASFFEWFSEEAPRIYGDTIPASV  61
            LR+   L+ +  ++LA L T ENGKPLA+A+GEV+ A     +++  A R+ G+T+P+  
Sbjct  57   LRKAADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSD-  115

Query  62   PGNRVMTLKQPVGVCGLITPWNFPAAMITRKVGPALAAGCTVVCKTPGETPFTANAIAEL  121
            PG    T ++P+GV G ITPWNFP  +   K+ PALAAG TVV K    TP TA  +AEL
Sbjct  116  PGRLAYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAEL  175

Query  122  AHRAGIPKGVVNMVTSLKNTPEVGEVITTHPEVRKVSFTGSTNVGRLLMKQASSTIKKVS  181
               AG+P GV+N+VT   +  EVGE +  HP+VRKVSFTGST VGR + + A+  +K+V+
Sbjct  176  FEEAGLPAGVLNVVTG--SGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVT  233

Query  182  WELGGNAPFIVFDDVDDLDAAVAGAIASKFRSSGQTCVCANRIYVQRGVYDEFVKRFAAK  241
             ELGG  P IV +D D   A    A+   F ++GQ C   +R+ V   +YDEFV++    
Sbjct  234  LELGGKNPLIVLEDADLDAAVE-AAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEA  292

Query  242  VKNFKLGSGFGDGVTHGPLIHERATEKVDQHVKDAQAKGAKLVAGGQKVPELGPNFYELT  301
             K  K+G         GPLI +   E+V ++V+DA+ +GAKL+ GG+   + G  F E T
Sbjct  293  AKKLKVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLDNG-YFVEPT  351

Query  302  VLAEMSKDMLMASEETFGPVAGIFPFETEKEVVELANRAEVGLAGYFFSGNVKRIFRVAE  361
            VLA ++ DM +A EE FGPV  +  F+ E+E +E+AN  E GLA   F+ +++R  RVA 
Sbjct  352  VLANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVAR  411

Query  362  ALEVGMVGVNTGLISDVAT  380
             LE GMV +N     D   
Sbjct  412  RLEAGMVWINDYTTGDADG  430



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00030414

Length=112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459811 pfam00444, Ribosomal_L36, Ribosomal protein L36            68.3    1e-17


>CDD:459811 pfam00444, Ribosomal_L36, Ribosomal protein L36.  
Length=38

 Score = 68.3 bits (168),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 27/38 (71%), Positives = 32/38 (84%), Gaps = 0/38 (0%)

Query  74   MKTRSSVKRLCDGCKPVRRKNRVYIICSKNPKHKQRQG  111
            MK RSS+K+ C+ CK VRRK RVY+IC KNP+HKQRQG
Sbjct  1    MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG  38



Lambda      K        H        a         alpha
   0.321    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00030418

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429085 pfam06728, PIG-U, GPI transamidase subunit PIG-U. Many...  378     2e-130


>CDD:429085 pfam06728, PIG-U, GPI transamidase subunit PIG-U.  Many eukaryotic 
proteins are anchored to the cell surface via glycosylphosphatidylinositol 
(GPI), which is posttranslationally attached 
to the carboxyl-terminus by GPI transamidase. The mammalian 
GPI transamidase is a complex of at least four subunits, 
GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent 
a fifth subunit in this complex and may be involved in the 
recognition of either the GPI attachment signal or the lipid 
portion of GPI.
Length=375

 Score = 378 bits (974),  Expect = 2e-130, Method: Composition-based stats.
 Identities = 180/358 (50%), Positives = 233/358 (65%), Gaps = 6/358 (2%)

Query  33   TGRVEVSTPVNSFKRLQEGLFLYTHNVSPYDGGVFHQAPLLLPIFALL--PNARDYPLAT  90
            + RVE STPV SFKRLQEGL+L  + +SPYDGGV HQ PLLL + +LL   N +  P+  
Sbjct  22   SSRVEFSTPVTSFKRLQEGLYLLANGISPYDGGVVHQPPLLLALLSLLLSINTKSSPILF  81

Query  91   AVFYALLDLVNANALVTISDSNQGISGRLYTTLRKDIKWGGVDVAAWYLFNPFTIAACLG  150
            ++ + L+DL+ A  L  I+ S Q    +L+ + R D     + +AA YLFNP TI +C+ 
Sbjct  82   SLLFTLIDLLIALLLYAIAKSYQKDISKLFKSKR-DKSLSPLLIAALYLFNPLTILSCIA  140

Query  151  RSTSAFTSTAILYALSNAVTGNSFNAMLALGCASYLSIYPALLFIPLVLLCYDRRAQVAK  210
             ST+ F++  IL +L +AV GN   + +AL  ASYLS+YP LL  PL+LL   +      
Sbjct  141  LSTTVFSNLFILLSLYSAVKGNRALSAIALALASYLSLYPILLLAPLLLLLIFKSKNNLS  200

Query  211  PSSGVAIFAIQHFGILLLGVGGLLSLSYLVVPDFQQFISATYGFQLLVPDLTPNIGLWWY  270
             +S      +    + LL +  LL  S+L+   +  F+ ATYGF L   DLTPN+GLWWY
Sbjct  201  SNS--LSKFLSFLLLFLLTLAALLLASFLITGSWD-FLDATYGFILTFEDLTPNLGLWWY  257

Query  271  FFIEIFDSFREFFLGVFWLHLTGYVGGLTVRLRKQPLFVLTSLVGIFTIFKPYPSISDAS  330
            FF E+FD FR FFL VF LH   Y+  LT+RLRKQPLF LT L+G+ +IFKPYP++ D  
Sbjct  258  FFTEMFDHFRPFFLFVFNLHPFIYILPLTIRLRKQPLFALTLLLGLISIFKPYPTLGDLG  317

Query  331  LYFALLPLYRHLFPLMRYTFFAISALLYATLLGPAFYYLWIYAGSGNANFFYAITLVW  388
            LY +LLPL+RHLFP MRY+F     LL A LL P FY+LWI  GSGNANFFYAITLV+
Sbjct  318  LYLSLLPLFRHLFPYMRYSFLIGLTLLVALLLSPIFYHLWIVLGSGNANFFYAITLVY  375



Lambda      K        H        a         alpha
   0.329    0.145    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00030415

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429085 pfam06728, PIG-U, GPI transamidase subunit PIG-U. Many...  317     2e-106


>CDD:429085 pfam06728, PIG-U, GPI transamidase subunit PIG-U.  Many eukaryotic 
proteins are anchored to the cell surface via glycosylphosphatidylinositol 
(GPI), which is posttranslationally attached 
to the carboxyl-terminus by GPI transamidase. The mammalian 
GPI transamidase is a complex of at least four subunits, 
GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent 
a fifth subunit in this complex and may be involved in the 
recognition of either the GPI attachment signal or the lipid 
portion of GPI.
Length=375

 Score = 317 bits (814),  Expect = 2e-106, Method: Composition-based stats.
 Identities = 151/314 (48%), Positives = 201/314 (64%), Gaps = 6/314 (2%)

Query  33   TGRVEVSTPVNSFKRLQEGLFLYTHNVSPYDGGVFHQAPLLLPIFALL--PNARDYPLAT  90
            + RVE STPV SFKRLQEGL+L  + +SPYDGGV HQ PLLL + +LL   N +  P+  
Sbjct  22   SSRVEFSTPVTSFKRLQEGLYLLANGISPYDGGVVHQPPLLLALLSLLLSINTKSSPILF  81

Query  91   AVFYALLDLVNANALVTISDSNQGISGRLYTTLRKDIKWGGVDVAAWYLFNPFTIAACLG  150
            ++ + L+DL+ A  L  I+ S Q    +L+ + R D     + +AA YLFNP TI +C+ 
Sbjct  82   SLLFTLIDLLIALLLYAIAKSYQKDISKLFKSKR-DKSLSPLLIAALYLFNPLTILSCIA  140

Query  151  RSTSAFTSTAILYALSNAVTGNSFNAMLALGCASYLSIYPALLFIPLVLLCYDRRAQVAK  210
             ST+ F++  IL +L +AV GN   + +AL  ASYLS+YP LL  PL+LL   +      
Sbjct  141  LSTTVFSNLFILLSLYSAVKGNRALSAIALALASYLSLYPILLLAPLLLLLIFKSKNNLS  200

Query  211  PSSGVAIFAIQHFGILLLGVGGLLSLSYLVVPDFQQFISATYGFQLLVPDLTPNIGLWWY  270
             +S      +    + LL +  LL  S+L+   +  F+ ATYGF L   DLTPN+GLWWY
Sbjct  201  SNS--LSKFLSFLLLFLLTLAALLLASFLITGSWD-FLDATYGFILTFEDLTPNLGLWWY  257

Query  271  FFIEIFDSFREFFLGVFWLHLTGYVGGLTVRLRKQPLFVLTSLVGIFTIFKPYPSISDAS  330
            FF E+FD FR FFL VF LH   Y+  LT+RLRKQPLF LT L+G+ +IFKPYP++ D  
Sbjct  258  FFTEMFDHFRPFFLFVFNLHPFIYILPLTIRLRKQPLFALTLLLGLISIFKPYPTLGDLG  317

Query  331  LYFALLPLYRHLFP  344
            LY +LLPL+RHLFP
Sbjct  318  LYLSLLPLFRHLFP  331



Lambda      K        H        a         alpha
   0.330    0.145    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00034957

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429085 pfam06728, PIG-U, GPI transamidase subunit PIG-U. Many...  228     2e-74


>CDD:429085 pfam06728, PIG-U, GPI transamidase subunit PIG-U.  Many eukaryotic 
proteins are anchored to the cell surface via glycosylphosphatidylinositol 
(GPI), which is posttranslationally attached 
to the carboxyl-terminus by GPI transamidase. The mammalian 
GPI transamidase is a complex of at least four subunits, 
GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent 
a fifth subunit in this complex and may be involved in the 
recognition of either the GPI attachment signal or the lipid 
portion of GPI.
Length=375

 Score = 228 bits (584),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 115/212 (54%), Positives = 141/212 (67%), Gaps = 3/212 (1%)

Query  1    MLALGCASYLSIYPALLFIPLVLLCYDRRAQVAKPSSGVAIFAIQHFGILLLGVGGLLSL  60
             +AL  ASYLS+YP LL  PL+LL   +       +S      +    + LL +  LL  
Sbjct  167  AIALALASYLSLYPILLLAPLLLLLIFKSKNNLSSNS--LSKFLSFLLLFLLTLAALLLA  224

Query  61   SYLVVPDFQQFISATYGFQLLVPDLTPNIGLWWYFFIEIFDSFREFFLGVFWLHLTGYVG  120
            S+L+   +  F+ ATYGF L   DLTPN+GLWWYFF E+FD FR FFL VF LH   Y+ 
Sbjct  225  SFLITGSWD-FLDATYGFILTFEDLTPNLGLWWYFFTEMFDHFRPFFLFVFNLHPFIYIL  283

Query  121  GLTVRLRKQPLFVLTSLVGIFTIFKPYPSISDASLYFALLPLYRHLFPLMRYTFFAISAL  180
             LT+RLRKQPLF LT L+G+ +IFKPYP++ D  LY +LLPL+RHLFP MRY+F     L
Sbjct  284  PLTIRLRKQPLFALTLLLGLISIFKPYPTLGDLGLYLSLLPLFRHLFPYMRYSFLIGLTL  343

Query  181  LYATLLGPAFYYLWIYAGSGNANFFYAITLVW  212
            L A LL P FY+LWI  GSGNANFFYAITLV+
Sbjct  344  LVALLLSPIFYHLWIVLGSGNANFFYAITLVY  375



Lambda      K        H        a         alpha
   0.332    0.148    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00030417

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429085 pfam06728, PIG-U, GPI transamidase subunit PIG-U. Many...  169     1e-51


>CDD:429085 pfam06728, PIG-U, GPI transamidase subunit PIG-U.  Many eukaryotic 
proteins are anchored to the cell surface via glycosylphosphatidylinositol 
(GPI), which is posttranslationally attached 
to the carboxyl-terminus by GPI transamidase. The mammalian 
GPI transamidase is a complex of at least four subunits, 
GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent 
a fifth subunit in this complex and may be involved in the 
recognition of either the GPI attachment signal or the lipid 
portion of GPI.
Length=375

 Score = 169 bits (431),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 86/168 (51%), Positives = 109/168 (65%), Gaps = 3/168 (2%)

Query  1    MLALGCASYLSIYPALLFIPLVLLCYDRRAQVAKPSSGVAIFAIQHFGILLLGVGGLLSL  60
             +AL  ASYLS+YP LL  PL+LL   +       +S      +    + LL +  LL  
Sbjct  167  AIALALASYLSLYPILLLAPLLLLLIFKSKNNLSSNS--LSKFLSFLLLFLLTLAALLLA  224

Query  61   SYLVVPDFQQFISATYGFQLLVPDLTPNIGLWWYFFIEIFDSFREFFLGVFWLHLTGYVG  120
            S+L+   +  F+ ATYGF L   DLTPN+GLWWYFF E+FD FR FFL VF LH   Y+ 
Sbjct  225  SFLITGSWD-FLDATYGFILTFEDLTPNLGLWWYFFTEMFDHFRPFFLFVFNLHPFIYIL  283

Query  121  GLTVRLRKQPLFVLTSLVGIFTIFKPYPSISDASLYFALLPLYRHLFP  168
             LT+RLRKQPLF LT L+G+ +IFKPYP++ D  LY +LLPL+RHLFP
Sbjct  284  PLTIRLRKQPLFALTLLLGLISIFKPYPTLGDLGLYLSLLPLFRHLFP  331



Lambda      K        H        a         alpha
   0.333    0.148    0.503    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00030419

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          98.8    2e-26
CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  78.4    6e-19


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 98.8 bits (247),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 44/98 (45%), Positives = 58/98 (59%), Gaps = 3/98 (3%)

Query  177  GVSMFALQFAKAAGATVIATTSSDTKAKKLKELGADHVINYKTNPNWGEIARSLTPDNVG  236
            GV + A+Q AKAAGA VIA   S+ K +  KELGADHVIN K   +  E  + LT    G
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELAKELGADHVINPK-ETDLVEEIKELTGGK-G  58

Query  237  VDHIIE-VGGAGTLSQSLKCIKFEGTISIIGFLGGADP  273
            VD + + VG   TL Q+LK ++  G + ++G  GG  P
Sbjct  59   VDVVFDCVGSPATLEQALKLLRPGGRVVVVGLPGGPLP  96


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 78.4 bits (194),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 41/109 (38%), Positives = 52/109 (48%), Gaps = 13/109 (12%)

Query  34   NEVLVKLRAASLNYRDLIIPKGMYPFPINFPVVPGSDGAGEVVEVGSKVTQFKKGDKVVT  93
             EVLVK++AA +   DL I KG  P P+  P++ G + AGEVVEVG  VT  K GD+VV 
Sbjct  1    GEVLVKVKAAGICGSDLHIYKGGNP-PVKLPLILGHEFAGEVVEVGPGVTGLKVGDRVVV  59

Query  94   LFN---------QLHQYGPVDTRSTNSGLGGVLDGTLRQYGVFNENGLV  133
                        +  +Y           LG   DG   +Y V  E  LV
Sbjct  60   EPLIPCGKCEYCREGRYNLCPNGRF---LGYDRDGGFAEYVVVPERNLV  105



Lambda      K        H        a         alpha
   0.316    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00034958

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  78.8    6e-20


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 78.8 bits (195),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 41/109 (38%), Positives = 52/109 (48%), Gaps = 13/109 (12%)

Query  34   NEVLVKLRAASLNYRDLIIPKGMYPFPINFPVVPGSDGAGEVVEVGSKVTQFKKGDKVVT  93
             EVLVK++AA +   DL I KG  P P+  P++ G + AGEVVEVG  VT  K GD+VV 
Sbjct  1    GEVLVKVKAAGICGSDLHIYKGGNP-PVKLPLILGHEFAGEVVEVGPGVTGLKVGDRVVV  59

Query  94   LFN---------QLHQYGPVDTRSTNSGLGGVLDGTLRQYGVFNENGLV  133
                        +  +Y           LG   DG   +Y V  E  LV
Sbjct  60   EPLIPCGKCEYCREGRYNLCPNGRF---LGYDRDGGFAEYVVVPERNLV  105



Lambda      K        H        a         alpha
   0.317    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00030421

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  78.4    4e-19


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 78.4 bits (194),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 41/109 (38%), Positives = 52/109 (48%), Gaps = 13/109 (12%)

Query  34   NEVLVKLRAASLNYRDLIIPKGMYPFPINFPVVPGSDGAGEVVEVGSKVTQFKKGDKVVT  93
             EVLVK++AA +   DL I KG  P P+  P++ G + AGEVVEVG  VT  K GD+VV 
Sbjct  1    GEVLVKVKAAGICGSDLHIYKGGNP-PVKLPLILGHEFAGEVVEVGPGVTGLKVGDRVVV  59

Query  94   LFN---------QLHQYGPVDTRSTNSGLGGVLDGTLRQYGVFNENGLV  133
                        +  +Y           LG   DG   +Y V  E  LV
Sbjct  60   EPLIPCGKCEYCREGRYNLCPNGRF---LGYDRDGGFAEYVVVPERNLV  105



Lambda      K        H        a         alpha
   0.318    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00030420

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          103     4e-28
CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        66.2    4e-14


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 103 bits (259),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 71/133 (53%), Gaps = 6/133 (5%)

Query  122  GVSMFALQFAKAAGATVIATTSSDTKAKKLKELGADHVINYKTNPNWGEIARSLTPDNVG  181
            GV + A+Q AKAAGA VIA   S+ K +  KELGADHVIN K   +  E  + LT    G
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELAKELGADHVINPK-ETDLVEEIKELTGGK-G  58

Query  182  VDHIIE-VGGAGTLSQSLKCIKFEGTISIIGFLGGADPKGQPGMLEALNHICTIRGVYVG  240
            VD + + VG   TL Q+LK ++  G + ++G  GG  P   P     L  + TI G ++G
Sbjct  59   VDVVFDCVGSPATLEQALKLLRPGGRVVVVGLPGGPLPL--PLAPLLLKEL-TILGSFLG  115

Query  241  SKALMNDMIRAIE  253
            S     + +  + 
Sbjct  116  SPEEFPEALDLLA  128


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 66.2 bits (162),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 33/139 (24%), Positives = 63/139 (45%), Gaps = 11/139 (8%)

Query  154  LGADHVINYKTNPNWGEIARSLTPDNVGVDHIIEVGGAGTLSQSLKCIKFEGTISIIGFL  213
            LGAD VI+Y+T     +  ++   +  GVD +++  G      SL+ +   G +  IG  
Sbjct  1    LGADEVIDYRT----TDFVQATGGE--GVDVVLDTVGGEAFEASLRVLPGGGRLVTIGGP  54

Query  214  GGADPKGQPGMLEALNHICTIRGVYV---GSKALMNDMIRAIEVNDIHPVVDEKVFRLDQ  270
              +     P              ++V       ++ ++   IE   + PV+D +VF L++
Sbjct  55   PLSAGLLLPARKRGG-RGVKYLFLFVRPNLGADILQELADLIEEGKLRPVID-RVFPLEE  112

Query  271  AKEAYEYMWAQKHLGKLAI  289
            A EA+ Y+ + +  GK+ +
Sbjct  113  AAEAHRYLESGRARGKIVL  131



Lambda      K        H        a         alpha
   0.317    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00030422

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          104     5e-28
CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  78.0    1e-18
CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        66.6    4e-14


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 104 bits (261),  Expect = 5e-28, Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 71/133 (53%), Gaps = 6/133 (5%)

Query  177  GVSMFALQFAKAAGATVIATTSSDTKAKKLKELGADHVINYKTNPNWGEIARSLTPDNVG  236
            GV + A+Q AKAAGA VIA   S+ K +  KELGADHVIN K   +  E  + LT    G
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELAKELGADHVINPK-ETDLVEEIKELTGGK-G  58

Query  237  VDHIIE-VGGAGTLSQSLKCIKFEGTISIIGFLGGADPKGQPGMLEALNHICTIRGVYVG  295
            VD + + VG   TL Q+LK ++  G + ++G  GG  P   P     L  + TI G ++G
Sbjct  59   VDVVFDCVGSPATLEQALKLLRPGGRVVVVGLPGGPLPL--PLAPLLLKEL-TILGSFLG  115

Query  296  SKALMNDMIRAIE  308
            S     + +  + 
Sbjct  116  SPEEFPEALDLLA  128


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 78.0 bits (193),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 41/109 (38%), Positives = 52/109 (48%), Gaps = 13/109 (12%)

Query  34   NEVLVKLRAASLNYRDLIIPKGMYPFPINFPVVPGSDGAGEVVEVGSKVTQFKKGDKVVT  93
             EVLVK++AA +   DL I KG  P P+  P++ G + AGEVVEVG  VT  K GD+VV 
Sbjct  1    GEVLVKVKAAGICGSDLHIYKGGNP-PVKLPLILGHEFAGEVVEVGPGVTGLKVGDRVVV  59

Query  94   LFN---------QLHQYGPVDTRSTNSGLGGVLDGTLRQYGVFNENGLV  133
                        +  +Y           LG   DG   +Y V  E  LV
Sbjct  60   EPLIPCGKCEYCREGRYNLCPNGRF---LGYDRDGGFAEYVVVPERNLV  105


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 66.6 bits (163),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 33/139 (24%), Positives = 63/139 (45%), Gaps = 11/139 (8%)

Query  209  LGADHVINYKTNPNWGEIARSLTPDNVGVDHIIEVGGAGTLSQSLKCIKFEGTISIIGFL  268
            LGAD VI+Y+T     +  ++   +  GVD +++  G      SL+ +   G +  IG  
Sbjct  1    LGADEVIDYRT----TDFVQATGGE--GVDVVLDTVGGEAFEASLRVLPGGGRLVTIGGP  54

Query  269  GGADPKGQPGMLEALNHICTIRGVYV---GSKALMNDMIRAIEVNDIHPVVDEKVFRLDQ  325
              +     P              ++V       ++ ++   IE   + PV+D +VF L++
Sbjct  55   PLSAGLLLPARKRGG-RGVKYLFLFVRPNLGADILQELADLIEEGKLRPVID-RVFPLEE  112

Query  326  AKEAYEYMWAQKHLGKLAI  344
            A EA+ Y+ + +  GK+ +
Sbjct  113  AAEAHRYLESGRARGKIVL  131



Lambda      K        H        a         alpha
   0.317    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00030423

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  79.2    8e-20
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          63.0    2e-13


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 79.2 bits (196),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 41/109 (38%), Positives = 52/109 (48%), Gaps = 13/109 (12%)

Query  34   NEVLVKLRAASLNYRDLIIPKGMYPFPINFPVVPGSDGAGEVVEVGSKVTQFKKGDKVVT  93
             EVLVK++AA +   DL I KG  P P+  P++ G + AGEVVEVG  VT  K GD+VV 
Sbjct  1    GEVLVKVKAAGICGSDLHIYKGGNP-PVKLPLILGHEFAGEVVEVGPGVTGLKVGDRVVV  59

Query  94   LFN---------QLHQYGPVDTRSTNSGLGGVLDGTLRQYGVFNENGLV  133
                        +  +Y           LG   DG   +Y V  E  LV
Sbjct  60   EPLIPCGKCEYCREGRYNLCPNGRF---LGYDRDGGFAEYVVVPERNLV  105


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 63.0 bits (154),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 30/43 (70%), Gaps = 0/43 (0%)

Query  177  GVSMFALQVTKAAGATVIATTSSDTKAKKLKELGADHVINYKT  219
            GV + A+Q+ KAAGA VIA   S+ K +  KELGADHVIN K 
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELAKELGADHVINPKE  43



Lambda      K        H        a         alpha
   0.315    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00030424

Length=187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          100     3e-28
CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        65.0    2e-14


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 100 bits (252),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 71/133 (53%), Gaps = 6/133 (5%)

Query  17   GVSMFALQFAKAAGATVIATTSSDTKAKKLKELGADHVINYKTNPNWGEIARSLTPDNVG  76
            GV + A+Q AKAAGA VIA   S+ K +  KELGADHVIN K   +  E  + LT    G
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELAKELGADHVINPK-ETDLVEEIKELTGGK-G  58

Query  77   VDHIIE-VGGAGTLSQSLKCIKFEGTISIIGFLGGADPKGQPGMLEALNHICTIRGVYVG  135
            VD + + VG   TL Q+LK ++  G + ++G  GG  P   P     L  + TI G ++G
Sbjct  59   VDVVFDCVGSPATLEQALKLLRPGGRVVVVGLPGGPLPL--PLAPLLLKEL-TILGSFLG  115

Query  136  SKALMNDMIRAIE  148
            S     + +  + 
Sbjct  116  SPEEFPEALDLLA  128


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 65.0 bits (159),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 33/139 (24%), Positives = 63/139 (45%), Gaps = 11/139 (8%)

Query  49   LGADHVINYKTNPNWGEIARSLTPDNVGVDHIIEVGGAGTLSQSLKCIKFEGTISIIGFL  108
            LGAD VI+Y+T     +  ++   +  GVD +++  G      SL+ +   G +  IG  
Sbjct  1    LGADEVIDYRT----TDFVQATGGE--GVDVVLDTVGGEAFEASLRVLPGGGRLVTIGGP  54

Query  109  GGADPKGQPGMLEALNHICTIRGVYV---GSKALMNDMIRAIEVNDIHPVVDEKVFRLDQ  165
              +     P              ++V       ++ ++   IE   + PV+D +VF L++
Sbjct  55   PLSAGLLLPARKRGG-RGVKYLFLFVRPNLGADILQELADLIEEGKLRPVID-RVFPLEE  112

Query  166  AKEAYEYMWAQKHLGKLAI  184
            A EA+ Y+ + +  GK+ +
Sbjct  113  AAEAHRYLESGRARGKIVL  131



Lambda      K        H        a         alpha
   0.317    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00034959

Length=187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          92.3    6e-25
CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        65.4    1e-14


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 92.3 bits (230),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 48/133 (36%), Positives = 70/133 (53%), Gaps = 6/133 (5%)

Query  17   GVSMFALQVSLQAGATVIATTSSDTKAKKLKELGADHVINYKTNPNWGEIARSLTPDNVG  76
            GV + A+Q++  AGA VIA   S+ K +  KELGADHVIN K   +  E  + LT    G
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELAKELGADHVINPK-ETDLVEEIKELTGGK-G  58

Query  77   VDHIIE-VGGAGTLSQSLKCIKFEGTISIIGFLGGADPKGQPGMLEALNHICTIRGVYVG  135
            VD + + VG   TL Q+LK ++  G + ++G  GG  P   P     L  + TI G ++G
Sbjct  59   VDVVFDCVGSPATLEQALKLLRPGGRVVVVGLPGGPLPL--PLAPLLLKEL-TILGSFLG  115

Query  136  SKALMNDMIRAIE  148
            S     + +  + 
Sbjct  116  SPEEFPEALDLLA  128


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 65.4 bits (160),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 33/139 (24%), Positives = 63/139 (45%), Gaps = 11/139 (8%)

Query  49   LGADHVINYKTNPNWGEIARSLTPDNVGVDHIIEVGGAGTLSQSLKCIKFEGTISIIGFL  108
            LGAD VI+Y+T     +  ++   +  GVD +++  G      SL+ +   G +  IG  
Sbjct  1    LGADEVIDYRT----TDFVQATGGE--GVDVVLDTVGGEAFEASLRVLPGGGRLVTIGGP  54

Query  109  GGADPKGQPGMLEALNHICTIRGVYV---GSKALMNDMIRAIEVNDIHPVVDEKVFRLDQ  165
              +     P              ++V       ++ ++   IE   + PV+D +VF L++
Sbjct  55   PLSAGLLLPARKRGG-RGVKYLFLFVRPNLGADILQELADLIEEGKLRPVID-RVFPLEE  112

Query  166  AKEAYEYMWAQKHLGKLAI  184
            A EA+ Y+ + +  GK+ +
Sbjct  113  AAEAHRYLESGRARGKIVL  131



Lambda      K        H        a         alpha
   0.317    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00030425

Length=965
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:283371 pfam05691, Raffinose_syn, Raffinose synthase or seed i...  207     2e-56


>CDD:283371 pfam05691, Raffinose_syn, Raffinose synthase or seed imbibition 
protein Sip1.  This family consists of several raffinose 
synthase proteins, also known as seed imbibition (Sip1) proteins. 
Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- 
D-glucopyranosyl-(1<-->2)- O-beta- D-fructofuranoside) is 
a widespread oligosaccharide in plant seeds and other tissues. 
Raffinose synthase (EC:2.4.1.82) is the key enzyme that 
channels sucrose into the raffinose oligosaccharide pathway. 
Raffinose family oligosaccharides (RFOs) are ubiquitous in 
plant seeds and are thought to play critical roles in the acquisition 
of tolerance to desiccation and seed longevity. Raffinose 
synthases are alkaline alpha-galactosidases and are 
solely responsible for RFO breakdown in germinating maize seeds, 
whereas acidic galactosidases appear to have other functions. 
Glycoside hydrolase family 36 can be split into 11 families, 
GH36A to GH36K. This family includes enzymes from GH36C.
Length=749

 Score = 207 bits (527),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 196/769 (25%), Positives = 315/769 (41%), Gaps = 154/769 (20%)

Query  222  TDVEVESRTSEAPASL--LWSLSGSVE-----AAKEGESGLRRVSLGKPSSIARYFALVR  274
            TDV      + + ++   L  L+G+ +        E        S+G+  +  R+ +  R
Sbjct  18   TDVPDNVTLTSSISADAPLPILAGAHKGGFIGFTFESPKSRHVNSIGRLENR-RFMSCFR  76

Query  275  VWIPWLGPRHGKKNFSL---TEDAVLCSFLRTDGSH------LVLLAVSGISDVLTVLAS  325
              + W+    GK    +   T+  +L S   + GS       + L  + G       L  
Sbjct  77   FKLWWMTQWMGKSGRDIPAETQFVLLESPSESGGSGEIDVYVVFLPLIEG--SFRASLQG  134

Query  326  NEKGEVVIKAKSDHTEA--SKFQVLA--SAADD-FEVAMSAVIYEARKMVRPYATEGLSD  380
             EK EV I  +S  T+   S F  +    A D+ F +     I +A K +R +       
Sbjct  135  GEKDEVEICLESGSTKVKESSFTHIVYIHAGDNPFNL-----IKDAFKALRVH-------  182

Query  381  RSPTPVSPMDNDIVVVEKDPQAQWMSEWYDGLGYCTWNGLGQNLTEENILFALNSLKEKG  440
                    M+   ++ EK           D  G+CTW+     +T E +   + SL++ G
Sbjct  183  --------MNTFKLLEEKKLPG-----IVDKFGWCTWDAFYLTVTPEGVWTGVKSLEDGG  229

Query  441  IEIQNLFIDDNWQTLDNEGE------------SQFNRAWTRFE-------ADSKAFPQ--  479
               + + IDD WQ+++ +G+             Q     T F+        D  +F    
Sbjct  230  TPPKFVIIDDGWQSIEFDGDLDKDAENLVLEGEQMTARLTGFKENKKFKKYDGGSFISDS  289

Query  480  --GFKRGIETIRQKHRNIQHIAVWHALFGYWGGISPNG------DLARAYKTKEVQITDP  531
              G K  ++ ++ + +++ +I VWHAL GYWGG+ P         +A    +  +  T P
Sbjct  290  GSGMKAFVKDLKLRFKSLDYIYVWHALCGYWGGVRPETMEDYKSKVAYPELSPGLGATMP  349

Query  532  ATGGTVAHASEKGSLLAIDPEDIQRFYDDFYSFLSSVGVDSVKTDAQFYLDLLKDPEDRR  591
                 V    E G  L   P+    FY++ +S+L+S GVD VK D Q  L+ L +    R
Sbjct  350  DL--AVDKVVEAGIGLV-SPKKAHEFYNELHSYLASAGVDGVKVDVQQILETLGEGLGGR  406

Query  592  -RFMNAYQDAWSISSLNHFS-TRAISCMSMIPQAIFHSHLPTNKPQIAL-RNSDDFFPEI  648
                 AY  A + S   +F+    I+ M      +F   L T   QI++ R  DDF+P  
Sbjct  407  VELAKAYHQALTSSVAKNFNGNGVIASMQHCNDFLF---LATK--QISIGRVGDDFWPRD  461

Query  649  PAS--------HTWHVFCNAHNAL-LTRYLNVLPDWDMFQTCHPYASFHAAARCLSGGPI  699
            P             H+   A+N+L +  ++   PDWDMFQ+ HP A +HAA+R +SGGPI
Sbjct  462  PYGDPQGVYWLQGIHMAHCAYNSLWMGEFIQ--PDWDMFQSDHPCAEYHAASRAISGGPI  519

Query  700  YITDEPGKHGLPVINQMTAPTIHGSTVILRPSIVGR-TLD-MYHD--YNEGNVLRIGTYT  755
            Y++D PGKH   ++ ++  P   GS  ILR  +    T D ++ D   +  ++L+I    
Sbjct  520  YVSDHPGKHNFDLLKKLVLP--DGS--ILRCRLYALPTRDCLFADPLRDGESLLKIWNMN  575

Query  756  GWAKTGSGILGLFNIHAAG-----------SSCIVPL------RDFPGIHAGS------D  792
             +    +G++G+FN   AG             C   L       D   I   S       
Sbjct  576  KF----TGVIGVFNCQGAGWSPEERRNKGHKECYTTLTGTVRVSDVEWISEPSAAQVTWT  631

Query  793  GQYIIRAHTSGKITEPIHPSDDKALVSVVLEQKEWEILTAYPTKSFTLRGSRGCNADGSR  852
            G Y +    SG++     PS++   + + LE  E+E+ T  P       G R        
Sbjct  632  GDYAVYKQQSGELL--FMPSNES--LPLTLEPSEFELFTVSPVTELVSSGVR--------  679

Query  853  LTHVAILGLLGKMTGAAAVTNSDIIMAENGRLRFDVSLKGLGTLGIYFS  901
                A +GL+     + A+ +    M  NG     V +KG G  G Y S
Sbjct  680  ---FAPIGLVNMFNSSGAIQS----MKYNGENSIRVGVKGCGRFGAYSS  721



Lambda      K        H        a         alpha
   0.319    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1230396244


Query= TCONS_00030426

Length=965
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:283371 pfam05691, Raffinose_syn, Raffinose synthase or seed i...  207     2e-56


>CDD:283371 pfam05691, Raffinose_syn, Raffinose synthase or seed imbibition 
protein Sip1.  This family consists of several raffinose 
synthase proteins, also known as seed imbibition (Sip1) proteins. 
Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- 
D-glucopyranosyl-(1<-->2)- O-beta- D-fructofuranoside) is 
a widespread oligosaccharide in plant seeds and other tissues. 
Raffinose synthase (EC:2.4.1.82) is the key enzyme that 
channels sucrose into the raffinose oligosaccharide pathway. 
Raffinose family oligosaccharides (RFOs) are ubiquitous in 
plant seeds and are thought to play critical roles in the acquisition 
of tolerance to desiccation and seed longevity. Raffinose 
synthases are alkaline alpha-galactosidases and are 
solely responsible for RFO breakdown in germinating maize seeds, 
whereas acidic galactosidases appear to have other functions. 
Glycoside hydrolase family 36 can be split into 11 families, 
GH36A to GH36K. This family includes enzymes from GH36C.
Length=749

 Score = 207 bits (527),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 196/769 (25%), Positives = 315/769 (41%), Gaps = 154/769 (20%)

Query  222  TDVEVESRTSEAPASL--LWSLSGSVE-----AAKEGESGLRRVSLGKPSSIARYFALVR  274
            TDV      + + ++   L  L+G+ +        E        S+G+  +  R+ +  R
Sbjct  18   TDVPDNVTLTSSISADAPLPILAGAHKGGFIGFTFESPKSRHVNSIGRLENR-RFMSCFR  76

Query  275  VWIPWLGPRHGKKNFSL---TEDAVLCSFLRTDGSH------LVLLAVSGISDVLTVLAS  325
              + W+    GK    +   T+  +L S   + GS       + L  + G       L  
Sbjct  77   FKLWWMTQWMGKSGRDIPAETQFVLLESPSESGGSGEIDVYVVFLPLIEG--SFRASLQG  134

Query  326  NEKGEVVIKAKSDHTEA--SKFQVLA--SAADD-FEVAMSAVIYEARKMVRPYATEGLSD  380
             EK EV I  +S  T+   S F  +    A D+ F +     I +A K +R +       
Sbjct  135  GEKDEVEICLESGSTKVKESSFTHIVYIHAGDNPFNL-----IKDAFKALRVH-------  182

Query  381  RSPTPVSPMDNDIVVVEKDPQAQWMSEWYDGLGYCTWNGLGQNLTEENILFALNSLKEKG  440
                    M+   ++ EK           D  G+CTW+     +T E +   + SL++ G
Sbjct  183  --------MNTFKLLEEKKLPG-----IVDKFGWCTWDAFYLTVTPEGVWTGVKSLEDGG  229

Query  441  IEIQNLFIDDNWQTLDNEGE------------SQFNRAWTRFE-------ADSKAFPQ--  479
               + + IDD WQ+++ +G+             Q     T F+        D  +F    
Sbjct  230  TPPKFVIIDDGWQSIEFDGDLDKDAENLVLEGEQMTARLTGFKENKKFKKYDGGSFISDS  289

Query  480  --GFKRGIETIRQKHRNIQHIAVWHALFGYWGGISPNG------DLARAYKTKEVQITDP  531
              G K  ++ ++ + +++ +I VWHAL GYWGG+ P         +A    +  +  T P
Sbjct  290  GSGMKAFVKDLKLRFKSLDYIYVWHALCGYWGGVRPETMEDYKSKVAYPELSPGLGATMP  349

Query  532  ATGGTVAHASEKGSLLAIDPEDIQRFYDDFYSFLSSVGVDSVKTDAQFYLDLLKDPEDRR  591
                 V    E G  L   P+    FY++ +S+L+S GVD VK D Q  L+ L +    R
Sbjct  350  DL--AVDKVVEAGIGLV-SPKKAHEFYNELHSYLASAGVDGVKVDVQQILETLGEGLGGR  406

Query  592  -RFMNAYQDAWSISSLNHFS-TRAISCMSMIPQAIFHSHLPTNKPQIAL-RNSDDFFPEI  648
                 AY  A + S   +F+    I+ M      +F   L T   QI++ R  DDF+P  
Sbjct  407  VELAKAYHQALTSSVAKNFNGNGVIASMQHCNDFLF---LATK--QISIGRVGDDFWPRD  461

Query  649  PAS--------HTWHVFCNAHNAL-LTRYLNVLPDWDMFQTCHPYASFHAAARCLSGGPI  699
            P             H+   A+N+L +  ++   PDWDMFQ+ HP A +HAA+R +SGGPI
Sbjct  462  PYGDPQGVYWLQGIHMAHCAYNSLWMGEFIQ--PDWDMFQSDHPCAEYHAASRAISGGPI  519

Query  700  YITDEPGKHGLPVINQMTAPTIHGSTVILRPSIVGR-TLD-MYHD--YNEGNVLRIGTYT  755
            Y++D PGKH   ++ ++  P   GS  ILR  +    T D ++ D   +  ++L+I    
Sbjct  520  YVSDHPGKHNFDLLKKLVLP--DGS--ILRCRLYALPTRDCLFADPLRDGESLLKIWNMN  575

Query  756  GWAKTGSGILGLFNIHAAG-----------SSCIVPL------RDFPGIHAGS------D  792
             +    +G++G+FN   AG             C   L       D   I   S       
Sbjct  576  KF----TGVIGVFNCQGAGWSPEERRNKGHKECYTTLTGTVRVSDVEWISEPSAAQVTWT  631

Query  793  GQYIIRAHTSGKITEPIHPSDDKALVSVVLEQKEWEILTAYPTKSFTLRGSRGCNADGSR  852
            G Y +    SG++     PS++   + + LE  E+E+ T  P       G R        
Sbjct  632  GDYAVYKQQSGELL--FMPSNES--LPLTLEPSEFELFTVSPVTELVSSGVR--------  679

Query  853  LTHVAILGLLGKMTGAAAVTNSDIIMAENGRLRFDVSLKGLGTLGIYFS  901
                A +GL+     + A+ +    M  NG     V +KG G  G Y S
Sbjct  680  ---FAPIGLVNMFNSSGAIQS----MKYNGENSIRVGVKGCGRFGAYSS  721



Lambda      K        H        a         alpha
   0.319    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1230396244


Query= TCONS_00034960

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28             95.4    1e-23


>CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28.  
Length=192

 Score = 95.4 bits (238),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 53/241 (22%), Positives = 83/241 (34%), Gaps = 63/241 (26%)

Query  127  RLTLVAHYDSKYKPEGFIGATDSAAPCAIIMHTMRSIDAALSKKWEAMQAQGRTDASLED  186
             + L AHYDS     G   A D+A+  A ++   R     L+                  
Sbjct  14   VVLLSAHYDSVGTGPG---ADDNASGVAALLELAR----VLAAGQRP-------------  53

Query  187  QKGIQVLFLDGEEAFDLWTDTDSLYGARALAEHWDSQVHPAMSVYKTPLSSISLFVLLDL  246
            ++ ++ LF D EEA         L G+   A+               PL  I   + LD+
Sbjct  54   KRSVRFLFFDAEEA--------GLLGSHHFAK------------SHPPLKKIRAVINLDM  93

Query  247  LGSKSP-YIQSYFATTHWAYQKLAALEKRLRDLKLFKSSSGDASERPWFADGAKNEHQLT  305
            +GS  P  +                LEK L+     K      +E P+   G        
Sbjct  94   IGSGGPALLFQSGPKGSSL------LEKYLK--AAAKPYGVTLAEDPFQERG--------  137

Query  306  TAGSIQDDHIPFLARGVEILHVIDASPMTGFPSVWHSMDDDGEHLDLDTVEDWSLLFTAF  365
              G  + DH PF+  G+  L +      T F   +H+  D  +++D  T++    L  A 
Sbjct  138  --GPGRSDHAPFIKAGIPGLDLAF----TDFGYRYHTPADTIDNIDPGTLQRIGDLVLAL  191

Query  366  A  366
             
Sbjct  192  V  192



Lambda      K        H        a         alpha
   0.319    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00034961

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28             95.4    1e-23


>CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28.  
Length=192

 Score = 95.4 bits (238),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 53/241 (22%), Positives = 83/241 (34%), Gaps = 63/241 (26%)

Query  127  RLTLVAHYDSKYKPEGFIGATDSAAPCAIIMHTMRSIDAALSKKWEAMQAQGRTDASLED  186
             + L AHYDS     G   A D+A+  A ++   R     L+                  
Sbjct  14   VVLLSAHYDSVGTGPG---ADDNASGVAALLELAR----VLAAGQRP-------------  53

Query  187  QKGIQVLFLDGEEAFDLWTDTDSLYGARALAEHWDSQVHPAMSVYKTPLSSISLFVLLDL  246
            ++ ++ LF D EEA         L G+   A+               PL  I   + LD+
Sbjct  54   KRSVRFLFFDAEEA--------GLLGSHHFAK------------SHPPLKKIRAVINLDM  93

Query  247  LGSKSP-YIQSYFATTHWAYQKLAALEKRLRDLKLFKSSSGDASERPWFADGAKNEHQLT  305
            +GS  P  +                LEK L+     K      +E P+   G        
Sbjct  94   IGSGGPALLFQSGPKGSSL------LEKYLK--AAAKPYGVTLAEDPFQERG--------  137

Query  306  TAGSIQDDHIPFLARGVEILHVIDASPMTGFPSVWHSMDDDGEHLDLDTVEDWSLLFTAF  365
              G  + DH PF+  G+  L +      T F   +H+  D  +++D  T++    L  A 
Sbjct  138  --GPGRSDHAPFIKAGIPGLDLAF----TDFGYRYHTPADTIDNIDPGTLQRIGDLVLAL  191

Query  366  A  366
             
Sbjct  192  V  192



Lambda      K        H        a         alpha
   0.319    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00030427

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00030430

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28             95.4    1e-23


>CDD:461288 pfam04389, Peptidase_M28, Peptidase family M28.  
Length=192

 Score = 95.4 bits (238),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 53/241 (22%), Positives = 83/241 (34%), Gaps = 63/241 (26%)

Query  127  RLTLVAHYDSKYKPEGFIGATDSAAPCAIIMHTMRSIDAALSKKWEAMQAQGRTDASLED  186
             + L AHYDS     G   A D+A+  A ++   R     L+                  
Sbjct  14   VVLLSAHYDSVGTGPG---ADDNASGVAALLELAR----VLAAGQRP-------------  53

Query  187  QKGIQVLFLDGEEAFDLWTDTDSLYGARALAEHWDSQVHPAMSVYKTPLSSISLFVLLDL  246
            ++ ++ LF D EEA         L G+   A+               PL  I   + LD+
Sbjct  54   KRSVRFLFFDAEEA--------GLLGSHHFAK------------SHPPLKKIRAVINLDM  93

Query  247  LGSKSP-YIQSYFATTHWAYQKLAALEKRLRDLKLFKSSSGDASERPWFADGAKNEHQLT  305
            +GS  P  +                LEK L+     K      +E P+   G        
Sbjct  94   IGSGGPALLFQSGPKGSSL------LEKYLK--AAAKPYGVTLAEDPFQERG--------  137

Query  306  TAGSIQDDHIPFLARGVEILHVIDASPMTGFPSVWHSMDDDGEHLDLDTVEDWSLLFTAF  365
              G  + DH PF+  G+  L +      T F   +H+  D  +++D  T++    L  A 
Sbjct  138  --GPGRSDHAPFIKAGIPGLDLAF----TDFGYRYHTPADTIDNIDPGTLQRIGDLVLAL  191

Query  366  A  366
             
Sbjct  192  V  192



Lambda      K        H        a         alpha
   0.319    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00034962

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00030431

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00034963

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00030434

Length=619
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461579 pfam05192, MutS_III, MutS domain III. This domain is f...  224     4e-69
CDD:398730 pfam05190, MutS_IV, MutS family domain IV. This domain...  70.3    2e-15
CDD:426350 pfam01624, MutS_I, MutS domain I. This domain is found...  62.6    1e-12


>CDD:461579 pfam05192, MutS_III, MutS domain III.  This domain is found in 
proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam00488, pfam05188, pfam01624 
and pfam05190. The MutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles in 
DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with domain 
III, which is central to the structure of Thermus aquaticus 
MutS as characterized in.
Length=291

 Score = 224 bits (573),  Expect = 4e-69, Method: Composition-based stats.
 Identities = 84/301 (28%), Positives = 136/301 (45%), Gaps = 18/301 (6%)

Query  251  QTLINMEIFANSFDGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLMDAKKINARLDAVDA  310
             TL N+E+  N   GG EG+L  LL+R  TP G R+ +QW+  PL D ++IN RLDAV+ 
Sbjct  1    ATLRNLELTEN-LRGGKEGSLLGLLDRTKTPMGSRLLRQWLLQPLTDLEEINERLDAVEE  59

Query  311  LNADSSVRDQFSSQLTKMPDLERLISRIHAANCKAQDFVRVLEGFEQIEYTITLLKDNGS  370
            L  +S +R+     L ++PDLERL+SRI       +D + +L+  E++     LL +  S
Sbjct  60   LLENSELREDLRELLRRLPDLERLLSRIALGKATPRDLLALLDSLEKLPLLKELLLEEKS  119

Query  371  SSEGVIGQL--------ISGMPDLSSLLEYWKTAFDRTKAKENGILVPKPGVEEDFDTSQ  422
            +  G +  L            P L       +  +D    +   +L+    +        
Sbjct  120  ALLGELASLAELLEEAIDEEPPALLRDGGVIRDGYDEELDELRDLLLDGKRLLAKL----  175

Query  423  ERIEQLHRDLDNLLKRQRRELGSTAICYRDNGKEIYQLEVPIKVKNIPKNWDQMSATKQV  482
            E  E+    + +L     +  G     Y     E Y      +   +P ++ ++  TK  
Sbjct  176  EARERERTGIKSLKVLYNKVFG-----YYLLLVEYYIEVSKSQKDKVPDDYIRIQTTKNA  230

Query  483  KRYYFPELRSLIRKLQEAQETHSQIVKEVAGRFYARFDENYTTWLAAVRIISQLDCLISL  542
            +RY  PEL+ L RK+ +A+E    + KE+         E       A   +++LD L+SL
Sbjct  231  ERYITPELKELERKILQAEERLLALEKELFEELLEEVLEYIEVLRRAAEALAELDVLLSL  290

Query  543  A  543
            A
Sbjct  291  A  291


>CDD:398730 pfam05190, MutS_IV, MutS family domain IV.  This domain is found 
in proteins of the MutS family (DNA mismatch repair proteins) 
and is found associated with pfam01624, pfam05188, pfam05192 
and pfam00488. The mutS family of proteins is named after 
the Salmonella typhimurium MutS protein involved in mismatch 
repair; other members of the family included the eukaryotic 
MSH 1,2,3, 4,5 and 6 proteins. These have various roles 
in DNA repair and recombination. Human MSH has been implicated 
in non-polyposis colorectal carcinoma (HNPCC) and is a 
mismatch binding protein. The aligned region corresponds in 
part with globular domain IV, which is involved in DNA binding, 
in Thermus aquaticus MutS as characterized in.
Length=92

 Score = 70.3 bits (173),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 27/91 (30%), Positives = 50/91 (55%), Gaps = 1/91 (1%)

Query  413  GVEEDFDTSQERIEQLHRDLDNLLKRQRRELGSTAICYRDNGKEIYQLEVPIK-VKNIPK  471
            G +E+ D  ++ +++L ++L+ L K++R +LG  ++    N    Y +EV     K +P 
Sbjct  1    GFDEELDELRDLLDELEKELEELEKKEREKLGIKSLKVGYNKVFGYYIEVTRSEAKKVPS  60

Query  472  NWDQMSATKQVKRYYFPELRSLIRKLQEAQE  502
            N+ +    K   R+  PEL+ L  +L EA+E
Sbjct  61   NYIRRQTLKNGVRFTTPELKKLEDELLEAEE  91


>CDD:426350 pfam01624, MutS_I, MutS domain I.  This domain is found in proteins 
of the MutS family (DNA mismatch repair proteins) and 
is found associated with pfam00488, pfam05188, pfam05192 and 
pfam05190. The MutS family of proteins is named after the 
Salmonella typhimurium MutS protein involved in mismatch repair; 
other members of the family included the eukaryotic MSH 
1,2,3, 4,5 and 6 proteins. These have various roles in DNA 
repair and recombination. Human MSH has been implicated in non-polyposis 
colorectal carcinoma (HNPCC) and is a mismatch 
binding protein. The aligned region corresponds with globular 
domain I, which is involved in DNA binding, in Thermus aquaticus 
MutS as characterized in.
Length=113

 Score = 62.6 bits (153),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 14/72 (19%)

Query  1    MRMVGVPEMSLDHWANQFVAKGFKIARVDQSESALGKEMRERDGKKAGGKEDKIIKRELS  60
            + M GVPE + + +A + V KG+K+A  +Q+E+                    ++KRE+ 
Sbjct  56   IPMAGVPEHAFERYARRLVNKGYKVAICEQTETPAEA--------------KGVVKREVV  101

Query  61   CVLTAGTLVEGS  72
             V+T GTL +  
Sbjct  102  RVVTPGTLTDDE  113



Lambda      K        H        a         alpha
   0.318    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787563556


Query= TCONS_00030433

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00030435

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00030436

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0773    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00030438

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00030439

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00034964

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00030437

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00034965

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:435535 pfam16714, TyrRSs_C, Tyrosyl-tRNA synthetase C-termina...  184     1e-60


>CDD:435535 pfam16714, TyrRSs_C, Tyrosyl-tRNA synthetase C-terminal domain. 
 This domain is found at the C-terminus of fungal tyrosyl-tRNA 
synthetases. It binds to group I introns.
Length=120

 Score = 184 bits (469),  Expect = 1e-60, Method: Composition-based stats.
 Identities = 75/119 (63%), Positives = 93/119 (78%), Gaps = 1/119 (1%)

Query  85   TNFANMGGPHVTLPHSLVYNQPFHKILWHAGLVSSKSEGHRIVANKGAYVGSRPG-DSGP  143
            TN  N     +TLP SLVYNQ F +IL+ AGLVSSKSEGHR++AN+GAYVG RPG  SG 
Sbjct  1    TNANNAPSVDITLPRSLVYNQSFARILYAAGLVSSKSEGHRLIANQGAYVGGRPGQGSGM  60

Query  144  MSDDLAFTPIETWLPEKTQEFIINGDLLLLKLGKWKFRMVRIVSDEEFKERGLTAPGWE  202
            M D L+FTPI+TW PE+T++F+I+G LL+L+ GKWK R++ IVSDEEF+  GLT PGW 
Sbjct  61   MPDQLSFTPIKTWFPEETKKFLIDGKLLILRKGKWKVRIIEIVSDEEFEASGLTYPGWP  119



Lambda      K        H        a         alpha
   0.311    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00030440

Length=117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395461 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W a...  103     7e-29


>CDD:395461 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y). 
 
Length=292

 Score = 103 bits (260),  Expect = 7e-29, Method: Composition-based stats.
 Identities = 47/113 (42%), Positives = 62/113 (55%), Gaps = 17/113 (15%)

Query  1    MTKGDGMSFAEFTYPLLQAWDWWVLFRKGVQVQVGGSDQYGNILFGMDAVKSISKNTAIE  60
            + +G G+S  EFTYPLLQA+D  +L      +Q GGSDQ+GNI  G D  +  +K     
Sbjct  125  LEQGPGISLGEFTYPLLQAYDILLLK---ADLQPGGSDQWGNIELGRDLARRFNKKI---  178

Query  61   QDRNPLEDDLDKPIGFTTPLLTAANGE-KFGKSAGN-AVWLDKDMTSTFELYQ  111
                       KP+G T PLLT  +G  K  KSAGN A++LD D  S ++  Q
Sbjct  179  ---------FKKPVGLTNPLLTGLDGGKKMSKSAGNSAIFLDDDPESVYKKIQ  222



Lambda      K        H        a         alpha
   0.317    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00034966

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  164     1e-49


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 164 bits (417),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 64/116 (55%), Positives = 85/116 (73%), Gaps = 4/116 (3%)

Query  133  EHRYLQLRSDSELRDALRFRAQVRNICREELEQCRPPFVEIETPLLFKS-TPEGAREFLV  191
            ++RYL LR   +++  L+ R+++    R  L++    F+E+ETP+L KS TPEGAR+FLV
Sbjct  7    KYRYLDLRRP-KMQANLKLRSKIIKAIRNFLDENG--FLEVETPILTKSATPEGARDFLV  63

Query  192  PTRRRGLAYALPQSPQQYKQILMASGIPRYYQFARCFRDEDLRADRQPEFTQVSIE  247
            P+R  G  YALPQSPQ YKQ+LM +G  R +Q ARCFRDEDLR DRQPEFTQ+ +E
Sbjct  64   PSRALGKFYALPQSPQLYKQLLMVAGFDRVFQIARCFRDEDLRTDRQPEFTQLDLE  119



Lambda      K        H        a         alpha
   0.321    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00030441

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family             149     3e-42


>CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family.  
Length=250

 Score = 149 bits (378),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 107/251 (43%), Gaps = 20/251 (8%)

Query  205  STLTFLYLTTGTFLSSCSANTLNMLLEPKYDALMSRTRNRPLVRGLLSRRAAVLFAIATA  264
              L  L    GT L+  +AN LN   +   DA+M RT NRPL  G +S R A++FA+   
Sbjct  18   DLLLLLLALLGTVLARAAANALNDYYDRDIDAIMPRTPNRPLPSGRISPREALIFALVLL  77

Query  265  AAGLGLLYIGTNPTTTALSASNICLYAFVYT-PLKRISVINTWVGAVVGGIPPLMGWTAA  323
            A GL LL +  NP T  L  + + LY  +YT  LKR +++   VG +  G+PPL+GW A 
Sbjct  78   ALGLLLLLL-LNPLTALLGLAALLLY-VLYTLRLKRRTLLGQLVGGLAFGLPPLLGWAAV  135

Query  324  AGQTATTGHDSWRDMLFSKDSIGGWLLGGILFAWQFPHFNALSYMIREEYKAAGYRMLAW  383
             G                  S    LL   LF W +    A     RE+ + AG + L  
Sbjct  136  TGSL----------------SPLALLLALALFLWTWAIALANDLRDREDDRKAGIKTLPV  179

Query  384  TNPAANARVALRYSLLMFPFSVGLWWVGVVGN-GFLVGSTAANGWLVKEAYKFWRHQGAN  442
                  AR+ L   L +    + L  + ++G    L+    A   L+  A          
Sbjct  180  VLGRKAARILLALLLAVALLLLLLLLLLLLGGLYLLLALLLAALALLYAARLLRLRDPKK  239

Query  443  GSARRLFWASI  453
             +    F +S+
Sbjct  240  DAKAFFFLSSL  250



Lambda      K        H        a         alpha
   0.319    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 637421786


Query= TCONS_00030442

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  319     1e-105


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 319 bits (820),  Expect = 1e-105, Method: Composition-based stats.
 Identities = 152/474 (32%), Positives = 198/474 (42%), Gaps = 183/474 (39%)

Query  112  EHRYLQLRSDSELRDALRFRAQVRNICREELEQCRPPFVEIETPLLFKS-TPEGAREFLV  170
            ++RYL LR   +++  L+ R+++    R  L++    F+E+ETP+L KS TPEGAR+FLV
Sbjct  7    KYRYLDLRRP-KMQANLKLRSKIIKAIRNFLDENG--FLEVETPILTKSATPEGARDFLV  63

Query  171  PTRRRGLAYALPQSPQQYKQILMASGIPRYYQFARCFRDEDLRADRQPEFTQLDLEMSFA  230
            P+R  G  YALPQSPQ YKQ+LM +G  R +Q ARCFRDEDLR DRQPEFTQLDLEMSF 
Sbjct  64   PSRALGKFYALPQSPQLYKQLLMVAGFDRVFQIARCFRDEDLRTDRQPEFTQLDLEMSFV  123

Query  231  TGEDVMRTVEGIIRRLWSSLM---------KDEAPSGPFRRMPYQDAMSR----------  271
              EDVM   E +I+ ++  +                 PF R+ Y +A+ +          
Sbjct  124  DYEDVMDLTEELIKEIFKEVEGIAKELEGGTLLDLKKPFPRITYAEAIEKLNGKDVEELG  183

Query  272  YGSDKPDTRYGMEIFKIDYLLPVDLVNKITPLTDPIIEAFKFEGNDNDPVATYEFIKQFL  331
            YGSDKPD R+ +E+                                              
Sbjct  184  YGSDKPDLRFLLEL----------------------------------------------  197

Query  332  DSPAGAPFNNNPEGGPGVFVYDAKKPLCGLQPFGFEAAERIEELLDPDHGDLIVIQARER  391
                                                                        
Sbjct       ------------------------------------------------------------  

Query  392  APFTGGSTPIGDLRRALHTAAVSSGFKPAPTGFDFLWVVDFPLFSPSSDSEPGQGGAAGI  451
                                            F+ LWV DFP                  
Sbjct  198  --------------------------VIDKNKFNPLWVTDFP------------------  213

Query  452  SSTHHPFTAPKTAADVDQLLTDPTKAVADHYDLVVNGVELGGGSRRIHDAAVQEFILRDI  511
             + HHPFT PK   D          A+A+ +DLV+NGVE+GGGS RIHD  +QE    + 
Sbjct  214  -AEHHPFTMPKDEDD---------PALAEAFDLVLNGVEIGGGSIRIHDPELQEERFEEQ  263

Query  512  LQMKPERLADFSHLLDALRAGCPPHAGLALGFDRLVAVMLGKESVRDVIAFPKT  565
                 E    F   LDAL+ G PPH GL +G DRLV ++ G ES+R+VIAFPKT
Sbjct  264  GLDPEEAEEKFGFYLDALKYGAPPHGGLGIGLDRLVMLLTGLESIREVIAFPKT  317



Lambda      K        H        a         alpha
   0.320    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 751697284


Query= TCONS_00034967

Length=680
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  321     3e-105


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 321 bits (824),  Expect = 3e-105, Method: Composition-based stats.
 Identities = 152/474 (32%), Positives = 198/474 (42%), Gaps = 183/474 (39%)

Query  197  EHRYLQLRSDSELRDALRFRAQVRNICREELEQCRPPFVEIETPLLFKS-TPEGAREFLV  255
            ++RYL LR   +++  L+ R+++    R  L++    F+E+ETP+L KS TPEGAR+FLV
Sbjct  7    KYRYLDLRRP-KMQANLKLRSKIIKAIRNFLDENG--FLEVETPILTKSATPEGARDFLV  63

Query  256  PTRRRGLAYALPQSPQQYKQILMASGIPRYYQFARCFRDEDLRADRQPEFTQLDLEMSFA  315
            P+R  G  YALPQSPQ YKQ+LM +G  R +Q ARCFRDEDLR DRQPEFTQLDLEMSF 
Sbjct  64   PSRALGKFYALPQSPQLYKQLLMVAGFDRVFQIARCFRDEDLRTDRQPEFTQLDLEMSFV  123

Query  316  TGEDVMRTVEGIIRRLWSSLM---------KDEAPSGPFRRMPYQDAMSR----------  356
              EDVM   E +I+ ++  +                 PF R+ Y +A+ +          
Sbjct  124  DYEDVMDLTEELIKEIFKEVEGIAKELEGGTLLDLKKPFPRITYAEAIEKLNGKDVEELG  183

Query  357  YGSDKPDTRYGMEIFKIDYLLPVDLVNKITPLTDPIIEAFKFEGNDNDPVATYEFIKQFL  416
            YGSDKPD R+ +E+                                              
Sbjct  184  YGSDKPDLRFLLEL----------------------------------------------  197

Query  417  DSPAGAPFNNNPEGGPGVFVYDAKKPLCGLQPFGFEAAERIEELLDPDHGDLIVIQARER  476
                                                                        
Sbjct       ------------------------------------------------------------  

Query  477  APFTGGSTPIGDLRRALHTAAVSSGFKPAPTGFDFLWVVDFPLFSPSSDSEPGQGGAAGI  536
                                            F+ LWV DFP                  
Sbjct  198  --------------------------VIDKNKFNPLWVTDFP------------------  213

Query  537  SSTHHPFTAPKTAADVDQLLTDPTKAVADHYDLVVNGVELGGGSRRIHDAAVQEFILRDI  596
             + HHPFT PK   D          A+A+ +DLV+NGVE+GGGS RIHD  +QE    + 
Sbjct  214  -AEHHPFTMPKDEDD---------PALAEAFDLVLNGVEIGGGSIRIHDPELQEERFEEQ  263

Query  597  LQMKPERLADFSHLLDALRAGCPPHAGLALGFDRLVAVMLGKESVRDVIAFPKT  650
                 E    F   LDAL+ G PPH GL +G DRLV ++ G ES+R+VIAFPKT
Sbjct  264  GLDPEEAEEKFGFYLDALKYGAPPHGGLGIGLDRLVMLLTGLESIREVIAFPKT  317



Lambda      K        H        a         alpha
   0.319    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 865701730


Query= TCONS_00030444

Length=680
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  320     6e-105


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 320 bits (822),  Expect = 6e-105, Method: Composition-based stats.
 Identities = 152/474 (32%), Positives = 198/474 (42%), Gaps = 183/474 (39%)

Query  197  EHRYLQLRSDSELRDALRFRAQVRNICREELEQCRPPFVEIETPLLFKS-TPEGAREFLV  255
            ++RYL LR   +++  L+ R+++    R  L++    F+E+ETP+L KS TPEGAR+FLV
Sbjct  7    KYRYLDLRRP-KMQANLKLRSKIIKAIRNFLDENG--FLEVETPILTKSATPEGARDFLV  63

Query  256  PTRRRGLAYALPQSPQQYKQILMASGIPRYYQFARCFRDEDLRADRQPEFTQLDLEMSFA  315
            P+R  G  YALPQSPQ YKQ+LM +G  R +Q ARCFRDEDLR DRQPEFTQLDLEMSF 
Sbjct  64   PSRALGKFYALPQSPQLYKQLLMVAGFDRVFQIARCFRDEDLRTDRQPEFTQLDLEMSFV  123

Query  316  TGEDVMRTVEGIIRRLWSSLM---------KDEAPSGPFRRMPYQDAMSR----------  356
              EDVM   E +I+ ++  +                 PF R+ Y +A+ +          
Sbjct  124  DYEDVMDLTEELIKEIFKEVEGIAKELEGGTLLDLKKPFPRITYAEAIEKLNGKDVEELG  183

Query  357  YGSDKPDTRYGMEIFKIDYLLPVDLVNKITPLTDPIIEAFKFEGNDNDPVATYEFIKQFL  416
            YGSDKPD R+ +E+                                              
Sbjct  184  YGSDKPDLRFLLEL----------------------------------------------  197

Query  417  DSPAGAPFNNNPEGGPGVFVYDAKKPLCGLQPFGFEAAERIEELLDPDHGDLIVIQARER  476
                                                                        
Sbjct       ------------------------------------------------------------  

Query  477  APFTGGSTPIGDLRRALHTAAVSSGFKPAPTGFDFLWVVDFPLFSPSSDSEPGQGGAAGI  536
                                            F+ LWV DFP                  
Sbjct  198  --------------------------VIDKNKFNPLWVTDFP------------------  213

Query  537  SSTHHPFTAPKTAADVDQLLTDPTKAVADHYDLVVNGVELGGGSRRIHDAAVQEFILRDI  596
             + HHPFT PK   D          A+A+ +DLV+NGVE+GGGS RIHD  +QE    + 
Sbjct  214  -AEHHPFTMPKDEDD---------PALAEAFDLVLNGVEIGGGSIRIHDPELQEERFEEQ  263

Query  597  LQMKPERLADFSHLLDALRAGCPPHAGLALGFDRLVAVMLGKESVRDVIAFPKT  650
                 E    F   LDAL+ G PPH GL +G DRLV ++ G ES+R+VIAFPKT
Sbjct  264  GLDPEEAEEKFGFYLDALKYGAPPHGGLGIGLDRLVMLLTGLESIREVIAFPKT  317



Lambda      K        H        a         alpha
   0.319    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 865701730


Query= TCONS_00030443

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  164     5e-49


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 164 bits (418),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 64/116 (55%), Positives = 85/116 (73%), Gaps = 4/116 (3%)

Query  197  EHRYLQLRSDSELRDALRFRAQVRNICREELEQCRPPFVEIETPLLFKS-TPEGAREFLV  255
            ++RYL LR   +++  L+ R+++    R  L++    F+E+ETP+L KS TPEGAR+FLV
Sbjct  7    KYRYLDLRRP-KMQANLKLRSKIIKAIRNFLDENG--FLEVETPILTKSATPEGARDFLV  63

Query  256  PTRRRGLAYALPQSPQQYKQILMASGIPRYYQFARCFRDEDLRADRQPEFTQVSIE  311
            P+R  G  YALPQSPQ YKQ+LM +G  R +Q ARCFRDEDLR DRQPEFTQ+ +E
Sbjct  64   PSRALGKFYALPQSPQLYKQLLMVAGFDRVFQIARCFRDEDLRTDRQPEFTQLDLE  119



Lambda      K        H        a         alpha
   0.320    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00030445

Length=680
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  320     7e-105


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 320 bits (822),  Expect = 7e-105, Method: Composition-based stats.
 Identities = 152/474 (32%), Positives = 198/474 (42%), Gaps = 183/474 (39%)

Query  197  EHRYLQLRSDSELRDALRFRAQVRNICREELEQCRPPFVEIETPLLFKS-TPEGAREFLV  255
            ++RYL LR   +++  L+ R+++    R  L++    F+E+ETP+L KS TPEGAR+FLV
Sbjct  7    KYRYLDLRRP-KMQANLKLRSKIIKAIRNFLDENG--FLEVETPILTKSATPEGARDFLV  63

Query  256  PTRRRGLAYALPQSPQQYKQILMASGIPRYYQFARCFRDEDLRADRQPEFTQLDLEMSFA  315
            P+R  G  YALPQSPQ YKQ+LM +G  R +Q ARCFRDEDLR DRQPEFTQLDLEMSF 
Sbjct  64   PSRALGKFYALPQSPQLYKQLLMVAGFDRVFQIARCFRDEDLRTDRQPEFTQLDLEMSFV  123

Query  316  TGEDVMRTVEGIIRRLWSSLM---------KDEAPSGPFRRMPYQDAMSR----------  356
              EDVM   E +I+ ++  +                 PF R+ Y +A+ +          
Sbjct  124  DYEDVMDLTEELIKEIFKEVEGIAKELEGGTLLDLKKPFPRITYAEAIEKLNGKDVEELG  183

Query  357  YGSDKPDTRYGMEIFKIDYLLPVDLVNKITPLTDPIIEAFKFEGNDNDPVATYEFIKQFL  416
            YGSDKPD R+ +E+                                              
Sbjct  184  YGSDKPDLRFLLEL----------------------------------------------  197

Query  417  DSPAGAPFNNNPEGGPGVFVYDAKKPLCGLQPFGFEAAERIEELLDPDHGDLIVIQARER  476
                                                                        
Sbjct       ------------------------------------------------------------  

Query  477  APFTGGSTPIGDLRRALHTAAVSSGFKPAPTGFDFLWVVDFPLFSPSSDSEPGQGGAAGI  536
                                            F+ LWV DFP                  
Sbjct  198  --------------------------VIDKNKFNPLWVTDFP------------------  213

Query  537  SSTHHPFTAPKTAADVDQLLTDPTKAVADHYDLVVNGVELGGGSRRIHDAAVQEFILRDI  596
             + HHPFT PK   D          A+A+ +DLV+NGVE+GGGS RIHD  +QE    + 
Sbjct  214  -AEHHPFTMPKDEDD---------PALAEAFDLVLNGVEIGGGSIRIHDPELQEERFEEQ  263

Query  597  LQMKPERLADFSHLLDALRAGCPPHAGLALGFDRLVAVMLGKESVRDVIAFPKT  650
                 E    F   LDAL+ G PPH GL +G DRLV ++ G ES+R+VIAFPKT
Sbjct  264  GLDPEEAEEKFGFYLDALKYGAPPHGGLGIGLDRLVMLLTGLESIREVIAFPKT  317



Lambda      K        H        a         alpha
   0.319    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 865701730


Query= TCONS_00030446

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, ...  319     6e-106


>CDD:425487 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). 
 
Length=318

 Score = 319 bits (819),  Expect = 6e-106, Method: Composition-based stats.
 Identities = 152/474 (32%), Positives = 198/474 (42%), Gaps = 183/474 (39%)

Query  78   EHRYLQLRSDSELRDALRFRAQVRNICREELEQCRPPFVEIETPLLFKS-TPEGAREFLV  136
            ++RYL LR   +++  L+ R+++    R  L++    F+E+ETP+L KS TPEGAR+FLV
Sbjct  7    KYRYLDLRRP-KMQANLKLRSKIIKAIRNFLDENG--FLEVETPILTKSATPEGARDFLV  63

Query  137  PTRRRGLAYALPQSPQQYKQILMASGIPRYYQFARCFRDEDLRADRQPEFTQLDLEMSFA  196
            P+R  G  YALPQSPQ YKQ+LM +G  R +Q ARCFRDEDLR DRQPEFTQLDLEMSF 
Sbjct  64   PSRALGKFYALPQSPQLYKQLLMVAGFDRVFQIARCFRDEDLRTDRQPEFTQLDLEMSFV  123

Query  197  TGEDVMRTVEGIIRRLWSSLM---------KDEAPSGPFRRMPYQDAMSR----------  237
              EDVM   E +I+ ++  +                 PF R+ Y +A+ +          
Sbjct  124  DYEDVMDLTEELIKEIFKEVEGIAKELEGGTLLDLKKPFPRITYAEAIEKLNGKDVEELG  183

Query  238  YGSDKPDTRYGMEIFKIDYLLPVDLVNKITPLTDPIIEAFKFEGNDNDPVATYEFIKQFL  297
            YGSDKPD R+ +E+                                              
Sbjct  184  YGSDKPDLRFLLEL----------------------------------------------  197

Query  298  DSPAGAPFNNNPEGGPGVFVYDAKKPLCGLQPFGFEAAERIEELLDPDHGDLIVIQARER  357
                                                                        
Sbjct       ------------------------------------------------------------  

Query  358  APFTGGSTPIGDLRRALHTAAVSSGFKPAPTGFDFLWVVDFPLFSPSSDSEPGQGGAAGI  417
                                            F+ LWV DFP                  
Sbjct  198  --------------------------VIDKNKFNPLWVTDFP------------------  213

Query  418  SSTHHPFTAPKTAADVDQLLTDPTKAVADHYDLVVNGVELGGGSRRIHDAAVQEFILRDI  477
             + HHPFT PK   D          A+A+ +DLV+NGVE+GGGS RIHD  +QE    + 
Sbjct  214  -AEHHPFTMPKDEDD---------PALAEAFDLVLNGVEIGGGSIRIHDPELQEERFEEQ  263

Query  478  LQMKPERLADFSHLLDALRAGCPPHAGLALGFDRLVAVMLGKESVRDVIAFPKT  531
                 E    F   LDAL+ G PPH GL +G DRLV ++ G ES+R+VIAFPKT
Sbjct  264  GLDPEEAEEKFGFYLDALKYGAPPHGGLGIGLDRLVMLLTGLESIREVIAFPKT  317



Lambda      K        H        a         alpha
   0.320    0.138    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 700886732


Query= TCONS_00030447

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family             149     3e-42


>CDD:460038 pfam01040, UbiA, UbiA prenyltransferase family.  
Length=250

 Score = 149 bits (378),  Expect = 3e-42, Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 107/251 (43%), Gaps = 20/251 (8%)

Query  205  STLTFLYLTTGTFLSSCSANTLNMLLEPKYDALMSRTRNRPLVRGLLSRRAAVLFAIATA  264
              L  L    GT L+  +AN LN   +   DA+M RT NRPL  G +S R A++FA+   
Sbjct  18   DLLLLLLALLGTVLARAAANALNDYYDRDIDAIMPRTPNRPLPSGRISPREALIFALVLL  77

Query  265  AAGLGLLYIGTNPTTTALSASNICLYAFVYT-PLKRISVINTWVGAVVGGIPPLMGWTAA  323
            A GL LL +  NP T  L  + + LY  +YT  LKR +++   VG +  G+PPL+GW A 
Sbjct  78   ALGLLLLLL-LNPLTALLGLAALLLY-VLYTLRLKRRTLLGQLVGGLAFGLPPLLGWAAV  135

Query  324  AGQTATTGHDSWRDMLFSKDSIGGWLLGGILFAWQFPHFNALSYMIREEYKAAGYRMLAW  383
             G                  S    LL   LF W +    A     RE+ + AG + L  
Sbjct  136  TGSL----------------SPLALLLALALFLWTWAIALANDLRDREDDRKAGIKTLPV  179

Query  384  TNPAANARVALRYSLLMFPFSVGLWWVGVVGN-GFLVGSTAANGWLVKEAYKFWRHQGAN  442
                  AR+ L   L +    + L  + ++G    L+    A   L+  A          
Sbjct  180  VLGRKAARILLALLLAVALLLLLLLLLLLLGGLYLLLALLLAALALLYAARLLRLRDPKK  239

Query  443  GSARRLFWASI  453
             +    F +S+
Sbjct  240  DAKAFFFLSSL  250



Lambda      K        H        a         alpha
   0.319    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 637421786


Query= TCONS_00030448

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00034968

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.128    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00034969

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00030450

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00030449

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00034971

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00034970

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00030451

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00030452

Length=228


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00034973

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00034972

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00030457

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00030453

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00030454

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466660 pfam20511, PMI_typeI_cat, Phosphomannose isomerase typ...  85.7    4e-21


>CDD:466660 pfam20511, PMI_typeI_cat, Phosphomannose isomerase type I, catalytic 
domain.  This entry represents the catalytic domain 
of Phosphomannose isomerase type I enzymes (EC 5.3.1.8) which 
contains a zinc-binding site. It is composed of beta-strands 
connected by long loops in a jelly roll conformation.
Length=143

 Score = 85.7 bits (212),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 33/57 (58%), Positives = 41/57 (72%), Gaps = 0/57 (0%)

Query  3    TQILSFAKALPLQIHPDKALAEKLHATDPKKFGDPNHKPEIAIALSNFELFAGFKPL  59
             ++LS  K L +Q+HPDK L E LHA DPK + D NHKPE+AIAL+ FE   GF+PL
Sbjct  87   FKVLSVEKPLSIQVHPDKELGEILHAADPKNYPDDNHKPELAIALTPFEGLCGFRPL  143



Lambda      K        H        a         alpha
   0.318    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00034974

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466660 pfam20511, PMI_typeI_cat, Phosphomannose isomerase typ...  85.7    4e-21


>CDD:466660 pfam20511, PMI_typeI_cat, Phosphomannose isomerase type I, catalytic 
domain.  This entry represents the catalytic domain 
of Phosphomannose isomerase type I enzymes (EC 5.3.1.8) which 
contains a zinc-binding site. It is composed of beta-strands 
connected by long loops in a jelly roll conformation.
Length=143

 Score = 85.7 bits (212),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 33/57 (58%), Positives = 41/57 (72%), Gaps = 0/57 (0%)

Query  3    TQILSFAKALPLQIHPDKALAEKLHATDPKKFGDPNHKPEIAIALSNFELFAGFKPL  59
             ++LS  K L +Q+HPDK L E LHA DPK + D NHKPE+AIAL+ FE   GF+PL
Sbjct  87   FKVLSVEKPLSIQVHPDKELGEILHAADPKNYPDDNHKPELAIALTPFEGLCGFRPL  143



Lambda      K        H        a         alpha
   0.318    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00030455

Length=275


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00034975

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00030456

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466660 pfam20511, PMI_typeI_cat, Phosphomannose isomerase typ...  85.7    4e-21


>CDD:466660 pfam20511, PMI_typeI_cat, Phosphomannose isomerase type I, catalytic 
domain.  This entry represents the catalytic domain 
of Phosphomannose isomerase type I enzymes (EC 5.3.1.8) which 
contains a zinc-binding site. It is composed of beta-strands 
connected by long loops in a jelly roll conformation.
Length=143

 Score = 85.7 bits (212),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 33/57 (58%), Positives = 41/57 (72%), Gaps = 0/57 (0%)

Query  3    TQILSFAKALPLQIHPDKALAEKLHATDPKKFGDPNHKPEIAIALSNFELFAGFKPL  59
             ++LS  K L +Q+HPDK L E LHA DPK + D NHKPE+AIAL+ FE   GF+PL
Sbjct  87   FKVLSVEKPLSIQVHPDKELGEILHAADPKNYPDDNHKPELAIALTPFEGLCGFRPL  143



Lambda      K        H        a         alpha
   0.318    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00030458

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466660 pfam20511, PMI_typeI_cat, Phosphomannose isomerase typ...  85.7    4e-21


>CDD:466660 pfam20511, PMI_typeI_cat, Phosphomannose isomerase type I, catalytic 
domain.  This entry represents the catalytic domain 
of Phosphomannose isomerase type I enzymes (EC 5.3.1.8) which 
contains a zinc-binding site. It is composed of beta-strands 
connected by long loops in a jelly roll conformation.
Length=143

 Score = 85.7 bits (212),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 33/57 (58%), Positives = 41/57 (72%), Gaps = 0/57 (0%)

Query  3    TQILSFAKALPLQIHPDKALAEKLHATDPKKFGDPNHKPEIAIALSNFELFAGFKPL  59
             ++LS  K L +Q+HPDK L E LHA DPK + D NHKPE+AIAL+ FE   GF+PL
Sbjct  87   FKVLSVEKPLSIQVHPDKELGEILHAADPKNYPDDNHKPELAIALTPFEGLCGFRPL  143



Lambda      K        H        a         alpha
   0.318    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00034976

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466660 pfam20511, PMI_typeI_cat, Phosphomannose isomerase typ...  85.7    4e-21


>CDD:466660 pfam20511, PMI_typeI_cat, Phosphomannose isomerase type I, catalytic 
domain.  This entry represents the catalytic domain 
of Phosphomannose isomerase type I enzymes (EC 5.3.1.8) which 
contains a zinc-binding site. It is composed of beta-strands 
connected by long loops in a jelly roll conformation.
Length=143

 Score = 85.7 bits (212),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 33/57 (58%), Positives = 41/57 (72%), Gaps = 0/57 (0%)

Query  3    TQILSFAKALPLQIHPDKALAEKLHATDPKKFGDPNHKPEIAIALSNFELFAGFKPL  59
             ++LS  K L +Q+HPDK L E LHA DPK + D NHKPE+AIAL+ FE   GF+PL
Sbjct  87   FKVLSVEKPLSIQVHPDKELGEILHAADPKNYPDDNHKPELAIALTPFEGLCGFRPL  143



Lambda      K        H        a         alpha
   0.318    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00034977

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00030459

Length=332


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00030460

Length=340


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00034978

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00030461

Length=1140
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit R...  234     8e-72
CDD:433376 pfam13646, HEAT_2, HEAT repeats. This family includes ...  67.4    3e-14


>CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit RPN2 C-terminal 
domain.  This is the C-terminal domain found in S. cerevisiae 
Rpn2 (26S proteasome regulatory subunit RPN2) as well 
as other eukaryotic species. A study revealed that the C-terminal 
52 residues of the Rpn2 C-terminal domain are responsible 
for mediating interactions with the ubiquitin-binding 
subunit Rpn13. Futhermore, the extreme C-terminal 20 or 21 
residues of Rpn2 (926-945 or 925-945) of S. cerevisiae, were 
shown to be equally effective at binding Rpn13. Multiple sequence 
alignments indicate that Rpn2 orthologs are highly conserved 
in this C-terminal region and share characteristic 
acidic, aromatic, and proline residues, suggesting a common 
function. In the structure of Rpn2 from S. cerevisiae, this 
region is exposed and disordered, and is thus accessible for 
associating with Rpn13. The Rpn2 binding surface of human Rpn13 
has been mapped by nuclear magnetic resonance titration 
to one surface of its Pru domain.
Length=159

 Score = 234 bits (598),  Expect = 8e-72, Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 119/175 (68%), Gaps = 18/175 (10%)

Query  880   TAVIGVDQKLEVPFFKFHSNTRPSLFDYPPEQQVKAEEAPEKVKTAVLSTTAQAKRRAQR  939
             TA+IG+++ L++P F+F+SN +PSLF YPPE + K E+APEKV TAVLSTTA+AK RA++
Sbjct  1     TAIIGLNKDLKMPKFEFNSNAKPSLFAYPPETEEKKEKAPEKVATAVLSTTAKAKARAKK  60

Query  940   REKQQRRESMDVDQTPTTPKVSDQLPEKMETDEGAEKPEEEAKEGEKGAGDGPKKKAERE  999
             +EK++ +E  +               +KM+ DE  E+ E++ KE E+      KKK E+E
Sbjct  61    KEKEKEKEKEE---------------DKMDVDEEKEEKEKKEKEKEEKEKKAEKKKKEKE  105

Query  1000  KVGYELENMSRVLPAQLKYLTF-PDPRYEPV-KRPTGGVVVVVLDKNPDEPRETI  1052
                Y+LEN SRVLPAQLKY++F  D RY PV K+ TGG ++V+ D  PDEP E I
Sbjct  106   PTFYKLENPSRVLPAQLKYISFIKDSRYVPVKKKGTGG-IIVLKDTKPDEPEELI  159


>CDD:433376 pfam13646, HEAT_2, HEAT repeats.  This family includes multiple 
HEAT repeats.
Length=88

 Score = 67.4 bits (165),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 34/95 (36%), Positives = 49/95 (52%), Gaps = 8/95 (8%)

Query  693  VRKLLHVAVSDVNDDVRRVAVLSLGFILFRKYQSVPRMVELLSESYNPHVRYGAAMALGI  752
            +  LL   + D + +VR  A+ +LG       ++VP ++ELL +  +P VR  AA ALG 
Sbjct  1    LPALLQALLRDPDPEVRAAAIRALG--RIGDPEAVPALLELLKDE-DPAVRRAAAEALGK  57

Query  753  SCAGTGLDEAIDLLEPMLKDSTD-FVRQGALIALA  786
                 G  EA+  L  +L+D  D  VR  A  ALA
Sbjct  58   ----IGDPEALPALLELLRDDDDDVVRAAAAEALA  88



Lambda      K        H        a         alpha
   0.315    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1456276234


Query= TCONS_00030462

Length=1034
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit R...  209     3e-63
CDD:433376 pfam13646, HEAT_2, HEAT repeats. This family includes ...  68.1    2e-14


>CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit RPN2 C-terminal 
domain.  This is the C-terminal domain found in S. cerevisiae 
Rpn2 (26S proteasome regulatory subunit RPN2) as well 
as other eukaryotic species. A study revealed that the C-terminal 
52 residues of the Rpn2 C-terminal domain are responsible 
for mediating interactions with the ubiquitin-binding 
subunit Rpn13. Futhermore, the extreme C-terminal 20 or 21 
residues of Rpn2 (926-945 or 925-945) of S. cerevisiae, were 
shown to be equally effective at binding Rpn13. Multiple sequence 
alignments indicate that Rpn2 orthologs are highly conserved 
in this C-terminal region and share characteristic 
acidic, aromatic, and proline residues, suggesting a common 
function. In the structure of Rpn2 from S. cerevisiae, this 
region is exposed and disordered, and is thus accessible for 
associating with Rpn13. The Rpn2 binding surface of human Rpn13 
has been mapped by nuclear magnetic resonance titration 
to one surface of its Pru domain.
Length=159

 Score = 209 bits (534),  Expect = 3e-63, Method: Composition-based stats.
 Identities = 75/154 (49%), Positives = 105/154 (68%), Gaps = 16/154 (10%)

Query  880   TAVIGVDQKLEVPFFKFHSNTRPSLFDYPPEQQVKAEEAPEKVKTAVLSTTAQAKRRAQR  939
             TA+IG+++ L++P F+F+SN +PSLF YPPE + K E+APEKV TAVLSTTA+AK RA++
Sbjct  1     TAIIGLNKDLKMPKFEFNSNAKPSLFAYPPETEEKKEKAPEKVATAVLSTTAKAKARAKK  60

Query  940   REKQQRRESMDVDQTPTTPKVSDQLPEKMETDEGAEKPEEEAKEGEKGAGDGPKKKAERE  999
             +EK++ +E  +               +KM+ DE  E+ E++ KE E+      KKK E+E
Sbjct  61    KEKEKEKEKEE---------------DKMDVDEEKEEKEKKEKEKEEKEKKAEKKKKEKE  105

Query  1000  KVGYELENMSRVLPAQLKYLTF-PDPRYEPVKRV  1032
                Y+LEN SRVLPAQLKY++F  D RY PVK+ 
Sbjct  106   PTFYKLENPSRVLPAQLKYISFIKDSRYVPVKKK  139


>CDD:433376 pfam13646, HEAT_2, HEAT repeats.  This family includes multiple 
HEAT repeats.
Length=88

 Score = 68.1 bits (167),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 34/95 (36%), Positives = 49/95 (52%), Gaps = 8/95 (8%)

Query  693  VRKLLHVAVSDVNDDVRRVAVLSLGFILFRKYQSVPRMVELLSESYNPHVRYGAAMALGI  752
            +  LL   + D + +VR  A+ +LG       ++VP ++ELL +  +P VR  AA ALG 
Sbjct  1    LPALLQALLRDPDPEVRAAAIRALG--RIGDPEAVPALLELLKDE-DPAVRRAAAEALGK  57

Query  753  SCAGTGLDEAIDLLEPMLKDSTD-FVRQGALIALA  786
                 G  EA+  L  +L+D  D  VR  A  ALA
Sbjct  58   ----IGDPEALPALLELLRDDDDDVVRAAAAEALA  88



Lambda      K        H        a         alpha
   0.316    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1328091688


Query= TCONS_00030463

Length=883
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit R...  234     7e-73
CDD:433376 pfam13646, HEAT_2, HEAT repeats. This family includes ...  68.1    1e-14


>CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit RPN2 C-terminal 
domain.  This is the C-terminal domain found in S. cerevisiae 
Rpn2 (26S proteasome regulatory subunit RPN2) as well 
as other eukaryotic species. A study revealed that the C-terminal 
52 residues of the Rpn2 C-terminal domain are responsible 
for mediating interactions with the ubiquitin-binding 
subunit Rpn13. Futhermore, the extreme C-terminal 20 or 21 
residues of Rpn2 (926-945 or 925-945) of S. cerevisiae, were 
shown to be equally effective at binding Rpn13. Multiple sequence 
alignments indicate that Rpn2 orthologs are highly conserved 
in this C-terminal region and share characteristic 
acidic, aromatic, and proline residues, suggesting a common 
function. In the structure of Rpn2 from S. cerevisiae, this 
region is exposed and disordered, and is thus accessible for 
associating with Rpn13. The Rpn2 binding surface of human Rpn13 
has been mapped by nuclear magnetic resonance titration 
to one surface of its Pru domain.
Length=159

 Score = 234 bits (599),  Expect = 7e-73, Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 119/175 (68%), Gaps = 18/175 (10%)

Query  623  TAVIGVDQKLEVPFFKFHSNTRPSLFDYPPEQQVKAEEAPEKVKTAVLSTTAQAKRRAQR  682
            TA+IG+++ L++P F+F+SN +PSLF YPPE + K E+APEKV TAVLSTTA+AK RA++
Sbjct  1    TAIIGLNKDLKMPKFEFNSNAKPSLFAYPPETEEKKEKAPEKVATAVLSTTAKAKARAKK  60

Query  683  REKQQRRESMDVDQTPTTPKVSDQLPEKMETDEGAEKPEEEAKEGEKGAGDGPKKKAERE  742
            +EK++ +E  +               +KM+ DE  E+ E++ KE E+      KKK E+E
Sbjct  61   KEKEKEKEKEE---------------DKMDVDEEKEEKEKKEKEKEEKEKKAEKKKKEKE  105

Query  743  KVGYELENMSRVLPAQLKYLTF-PDPRYEPV-KRPTGGVVVVVLDKNPDEPRETI  795
               Y+LEN SRVLPAQLKY++F  D RY PV K+ TGG ++V+ D  PDEP E I
Sbjct  106  PTFYKLENPSRVLPAQLKYISFIKDSRYVPVKKKGTGG-IIVLKDTKPDEPEELI  159


>CDD:433376 pfam13646, HEAT_2, HEAT repeats.  This family includes multiple 
HEAT repeats.
Length=88

 Score = 68.1 bits (167),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 34/95 (36%), Positives = 49/95 (52%), Gaps = 8/95 (8%)

Query  436  VRKLLHVAVSDVNDDVRRVAVLSLGFILFRKYQSVPRMVELLSESYNPHVRYGAAMALGI  495
            +  LL   + D + +VR  A+ +LG       ++VP ++ELL +  +P VR  AA ALG 
Sbjct  1    LPALLQALLRDPDPEVRAAAIRALG--RIGDPEAVPALLELLKDE-DPAVRRAAAEALGK  57

Query  496  SCAGTGLDEAIDLLEPMLKDSTD-FVRQGALIALA  529
                 G  EA+  L  +L+D  D  VR  A  ALA
Sbjct  58   ----IGDPEALPALLELLRDDDDDVVRAAAAEALA  88



Lambda      K        H        a         alpha
   0.316    0.133    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1131185032


Query= TCONS_00034979

Length=1061
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit R...  234     4e-72
CDD:433376 pfam13646, HEAT_2, HEAT repeats. This family includes ...  68.1    2e-14


>CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit RPN2 C-terminal 
domain.  This is the C-terminal domain found in S. cerevisiae 
Rpn2 (26S proteasome regulatory subunit RPN2) as well 
as other eukaryotic species. A study revealed that the C-terminal 
52 residues of the Rpn2 C-terminal domain are responsible 
for mediating interactions with the ubiquitin-binding 
subunit Rpn13. Futhermore, the extreme C-terminal 20 or 21 
residues of Rpn2 (926-945 or 925-945) of S. cerevisiae, were 
shown to be equally effective at binding Rpn13. Multiple sequence 
alignments indicate that Rpn2 orthologs are highly conserved 
in this C-terminal region and share characteristic 
acidic, aromatic, and proline residues, suggesting a common 
function. In the structure of Rpn2 from S. cerevisiae, this 
region is exposed and disordered, and is thus accessible for 
associating with Rpn13. The Rpn2 binding surface of human Rpn13 
has been mapped by nuclear magnetic resonance titration 
to one surface of its Pru domain.
Length=159

 Score = 234 bits (599),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 119/175 (68%), Gaps = 18/175 (10%)

Query  801  TAVIGVDQKLEVPFFKFHSNTRPSLFDYPPEQQVKAEEAPEKVKTAVLSTTAQAKRRAQR  860
            TA+IG+++ L++P F+F+SN +PSLF YPPE + K E+APEKV TAVLSTTA+AK RA++
Sbjct  1    TAIIGLNKDLKMPKFEFNSNAKPSLFAYPPETEEKKEKAPEKVATAVLSTTAKAKARAKK  60

Query  861  REKQQRRESMDVDQTPTTPKVSDQLPEKMETDEGAEKPEEEAKEGEKGAGDGPKKKAERE  920
            +EK++ +E  +               +KM+ DE  E+ E++ KE E+      KKK E+E
Sbjct  61   KEKEKEKEKEE---------------DKMDVDEEKEEKEKKEKEKEEKEKKAEKKKKEKE  105

Query  921  KVGYELENMSRVLPAQLKYLTF-PDPRYEPV-KRPTGGVVVVVLDKNPDEPRETI  973
               Y+LEN SRVLPAQLKY++F  D RY PV K+ TGG ++V+ D  PDEP E I
Sbjct  106  PTFYKLENPSRVLPAQLKYISFIKDSRYVPVKKKGTGG-IIVLKDTKPDEPEELI  159


>CDD:433376 pfam13646, HEAT_2, HEAT repeats.  This family includes multiple 
HEAT repeats.
Length=88

 Score = 68.1 bits (167),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 34/95 (36%), Positives = 49/95 (52%), Gaps = 8/95 (8%)

Query  614  VRKLLHVAVSDVNDDVRRVAVLSLGFILFRKYQSVPRMVELLSESYNPHVRYGAAMALGI  673
            +  LL   + D + +VR  A+ +LG       ++VP ++ELL +  +P VR  AA ALG 
Sbjct  1    LPALLQALLRDPDPEVRAAAIRALG--RIGDPEAVPALLELLKDE-DPAVRRAAAEALGK  57

Query  674  SCAGTGLDEAIDLLEPMLKDSTD-FVRQGALIALA  707
                 G  EA+  L  +L+D  D  VR  A  ALA
Sbjct  58   ----IGDPEALPALLELLRDDDDDVVRAAAAEALA  88



Lambda      K        H        a         alpha
   0.315    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1366320340


Query= TCONS_00034980

Length=832
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit R...  234     6e-73
CDD:433376 pfam13646, HEAT_2, HEAT repeats. This family includes ...  67.4    2e-14


>CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit RPN2 C-terminal 
domain.  This is the C-terminal domain found in S. cerevisiae 
Rpn2 (26S proteasome regulatory subunit RPN2) as well 
as other eukaryotic species. A study revealed that the C-terminal 
52 residues of the Rpn2 C-terminal domain are responsible 
for mediating interactions with the ubiquitin-binding 
subunit Rpn13. Futhermore, the extreme C-terminal 20 or 21 
residues of Rpn2 (926-945 or 925-945) of S. cerevisiae, were 
shown to be equally effective at binding Rpn13. Multiple sequence 
alignments indicate that Rpn2 orthologs are highly conserved 
in this C-terminal region and share characteristic 
acidic, aromatic, and proline residues, suggesting a common 
function. In the structure of Rpn2 from S. cerevisiae, this 
region is exposed and disordered, and is thus accessible for 
associating with Rpn13. The Rpn2 binding surface of human Rpn13 
has been mapped by nuclear magnetic resonance titration 
to one surface of its Pru domain.
Length=159

 Score = 234 bits (598),  Expect = 6e-73, Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 119/175 (68%), Gaps = 18/175 (10%)

Query  572  TAVIGVDQKLEVPFFKFHSNTRPSLFDYPPEQQVKAEEAPEKVKTAVLSTTAQAKRRAQR  631
            TA+IG+++ L++P F+F+SN +PSLF YPPE + K E+APEKV TAVLSTTA+AK RA++
Sbjct  1    TAIIGLNKDLKMPKFEFNSNAKPSLFAYPPETEEKKEKAPEKVATAVLSTTAKAKARAKK  60

Query  632  REKQQRRESMDVDQTPTTPKVSDQLPEKMETDEGAEKPEEEAKEGEKGAGDGPKKKAERE  691
            +EK++ +E  +               +KM+ DE  E+ E++ KE E+      KKK E+E
Sbjct  61   KEKEKEKEKEE---------------DKMDVDEEKEEKEKKEKEKEEKEKKAEKKKKEKE  105

Query  692  KVGYELENMSRVLPAQLKYLTF-PDPRYEPV-KRPTGGVVVVVLDKNPDEPRETI  744
               Y+LEN SRVLPAQLKY++F  D RY PV K+ TGG ++V+ D  PDEP E I
Sbjct  106  PTFYKLENPSRVLPAQLKYISFIKDSRYVPVKKKGTGG-IIVLKDTKPDEPEELI  159


>CDD:433376 pfam13646, HEAT_2, HEAT repeats.  This family includes multiple 
HEAT repeats.
Length=88

 Score = 67.4 bits (165),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 34/95 (36%), Positives = 49/95 (52%), Gaps = 8/95 (8%)

Query  385  VRKLLHVAVSDVNDDVRRVAVLSLGFILFRKYQSVPRMVELLSESYNPHVRYGAAMALGI  444
            +  LL   + D + +VR  A+ +LG       ++VP ++ELL +  +P VR  AA ALG 
Sbjct  1    LPALLQALLRDPDPEVRAAAIRALG--RIGDPEAVPALLELLKDE-DPAVRRAAAEALGK  57

Query  445  SCAGTGLDEAIDLLEPMLKDSTD-FVRQGALIALA  478
                 G  EA+  L  +L+D  D  VR  A  ALA
Sbjct  58   ----IGDPEALPALLELLRDDDDDVVRAAAAEALA  88



Lambda      K        H        a         alpha
   0.315    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1057973818


Query= TCONS_00034981

Length=832
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit R...  234     6e-73
CDD:433376 pfam13646, HEAT_2, HEAT repeats. This family includes ...  67.4    2e-14


>CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit RPN2 C-terminal 
domain.  This is the C-terminal domain found in S. cerevisiae 
Rpn2 (26S proteasome regulatory subunit RPN2) as well 
as other eukaryotic species. A study revealed that the C-terminal 
52 residues of the Rpn2 C-terminal domain are responsible 
for mediating interactions with the ubiquitin-binding 
subunit Rpn13. Futhermore, the extreme C-terminal 20 or 21 
residues of Rpn2 (926-945 or 925-945) of S. cerevisiae, were 
shown to be equally effective at binding Rpn13. Multiple sequence 
alignments indicate that Rpn2 orthologs are highly conserved 
in this C-terminal region and share characteristic 
acidic, aromatic, and proline residues, suggesting a common 
function. In the structure of Rpn2 from S. cerevisiae, this 
region is exposed and disordered, and is thus accessible for 
associating with Rpn13. The Rpn2 binding surface of human Rpn13 
has been mapped by nuclear magnetic resonance titration 
to one surface of its Pru domain.
Length=159

 Score = 234 bits (598),  Expect = 6e-73, Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 119/175 (68%), Gaps = 18/175 (10%)

Query  572  TAVIGVDQKLEVPFFKFHSNTRPSLFDYPPEQQVKAEEAPEKVKTAVLSTTAQAKRRAQR  631
            TA+IG+++ L++P F+F+SN +PSLF YPPE + K E+APEKV TAVLSTTA+AK RA++
Sbjct  1    TAIIGLNKDLKMPKFEFNSNAKPSLFAYPPETEEKKEKAPEKVATAVLSTTAKAKARAKK  60

Query  632  REKQQRRESMDVDQTPTTPKVSDQLPEKMETDEGAEKPEEEAKEGEKGAGDGPKKKAERE  691
            +EK++ +E  +               +KM+ DE  E+ E++ KE E+      KKK E+E
Sbjct  61   KEKEKEKEKEE---------------DKMDVDEEKEEKEKKEKEKEEKEKKAEKKKKEKE  105

Query  692  KVGYELENMSRVLPAQLKYLTF-PDPRYEPV-KRPTGGVVVVVLDKNPDEPRETI  744
               Y+LEN SRVLPAQLKY++F  D RY PV K+ TGG ++V+ D  PDEP E I
Sbjct  106  PTFYKLENPSRVLPAQLKYISFIKDSRYVPVKKKGTGG-IIVLKDTKPDEPEELI  159


>CDD:433376 pfam13646, HEAT_2, HEAT repeats.  This family includes multiple 
HEAT repeats.
Length=88

 Score = 67.4 bits (165),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 34/95 (36%), Positives = 49/95 (52%), Gaps = 8/95 (8%)

Query  385  VRKLLHVAVSDVNDDVRRVAVLSLGFILFRKYQSVPRMVELLSESYNPHVRYGAAMALGI  444
            +  LL   + D + +VR  A+ +LG       ++VP ++ELL +  +P VR  AA ALG 
Sbjct  1    LPALLQALLRDPDPEVRAAAIRALG--RIGDPEAVPALLELLKDE-DPAVRRAAAEALGK  57

Query  445  SCAGTGLDEAIDLLEPMLKDSTD-FVRQGALIALA  478
                 G  EA+  L  +L+D  D  VR  A  ALA
Sbjct  58   ----IGDPEALPALLELLRDDDDDVVRAAAAEALA  88



Lambda      K        H        a         alpha
   0.315    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1057973818


Query= TCONS_00034982

Length=1061
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit R...  234     4e-72
CDD:433376 pfam13646, HEAT_2, HEAT repeats. This family includes ...  68.1    2e-14


>CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit RPN2 C-terminal 
domain.  This is the C-terminal domain found in S. cerevisiae 
Rpn2 (26S proteasome regulatory subunit RPN2) as well 
as other eukaryotic species. A study revealed that the C-terminal 
52 residues of the Rpn2 C-terminal domain are responsible 
for mediating interactions with the ubiquitin-binding 
subunit Rpn13. Futhermore, the extreme C-terminal 20 or 21 
residues of Rpn2 (926-945 or 925-945) of S. cerevisiae, were 
shown to be equally effective at binding Rpn13. Multiple sequence 
alignments indicate that Rpn2 orthologs are highly conserved 
in this C-terminal region and share characteristic 
acidic, aromatic, and proline residues, suggesting a common 
function. In the structure of Rpn2 from S. cerevisiae, this 
region is exposed and disordered, and is thus accessible for 
associating with Rpn13. The Rpn2 binding surface of human Rpn13 
has been mapped by nuclear magnetic resonance titration 
to one surface of its Pru domain.
Length=159

 Score = 234 bits (599),  Expect = 4e-72, Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 119/175 (68%), Gaps = 18/175 (10%)

Query  801  TAVIGVDQKLEVPFFKFHSNTRPSLFDYPPEQQVKAEEAPEKVKTAVLSTTAQAKRRAQR  860
            TA+IG+++ L++P F+F+SN +PSLF YPPE + K E+APEKV TAVLSTTA+AK RA++
Sbjct  1    TAIIGLNKDLKMPKFEFNSNAKPSLFAYPPETEEKKEKAPEKVATAVLSTTAKAKARAKK  60

Query  861  REKQQRRESMDVDQTPTTPKVSDQLPEKMETDEGAEKPEEEAKEGEKGAGDGPKKKAERE  920
            +EK++ +E  +               +KM+ DE  E+ E++ KE E+      KKK E+E
Sbjct  61   KEKEKEKEKEE---------------DKMDVDEEKEEKEKKEKEKEEKEKKAEKKKKEKE  105

Query  921  KVGYELENMSRVLPAQLKYLTF-PDPRYEPV-KRPTGGVVVVVLDKNPDEPRETI  973
               Y+LEN SRVLPAQLKY++F  D RY PV K+ TGG ++V+ D  PDEP E I
Sbjct  106  PTFYKLENPSRVLPAQLKYISFIKDSRYVPVKKKGTGG-IIVLKDTKPDEPEELI  159


>CDD:433376 pfam13646, HEAT_2, HEAT repeats.  This family includes multiple 
HEAT repeats.
Length=88

 Score = 68.1 bits (167),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 34/95 (36%), Positives = 49/95 (52%), Gaps = 8/95 (8%)

Query  614  VRKLLHVAVSDVNDDVRRVAVLSLGFILFRKYQSVPRMVELLSESYNPHVRYGAAMALGI  673
            +  LL   + D + +VR  A+ +LG       ++VP ++ELL +  +P VR  AA ALG 
Sbjct  1    LPALLQALLRDPDPEVRAAAIRALG--RIGDPEAVPALLELLKDE-DPAVRRAAAEALGK  57

Query  674  SCAGTGLDEAIDLLEPMLKDSTD-FVRQGALIALA  707
                 G  EA+  L  +L+D  D  VR  A  ALA
Sbjct  58   ----IGDPEALPALLELLRDDDDDVVRAAAAEALA  88



Lambda      K        H        a         alpha
   0.315    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1366320340


Query= TCONS_00030464

Length=1140
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit R...  234     8e-72
CDD:433376 pfam13646, HEAT_2, HEAT repeats. This family includes ...  67.4    3e-14


>CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit RPN2 C-terminal 
domain.  This is the C-terminal domain found in S. cerevisiae 
Rpn2 (26S proteasome regulatory subunit RPN2) as well 
as other eukaryotic species. A study revealed that the C-terminal 
52 residues of the Rpn2 C-terminal domain are responsible 
for mediating interactions with the ubiquitin-binding 
subunit Rpn13. Futhermore, the extreme C-terminal 20 or 21 
residues of Rpn2 (926-945 or 925-945) of S. cerevisiae, were 
shown to be equally effective at binding Rpn13. Multiple sequence 
alignments indicate that Rpn2 orthologs are highly conserved 
in this C-terminal region and share characteristic 
acidic, aromatic, and proline residues, suggesting a common 
function. In the structure of Rpn2 from S. cerevisiae, this 
region is exposed and disordered, and is thus accessible for 
associating with Rpn13. The Rpn2 binding surface of human Rpn13 
has been mapped by nuclear magnetic resonance titration 
to one surface of its Pru domain.
Length=159

 Score = 234 bits (598),  Expect = 8e-72, Method: Composition-based stats.
 Identities = 86/175 (49%), Positives = 119/175 (68%), Gaps = 18/175 (10%)

Query  880   TAVIGVDQKLEVPFFKFHSNTRPSLFDYPPEQQVKAEEAPEKVKTAVLSTTAQAKRRAQR  939
             TA+IG+++ L++P F+F+SN +PSLF YPPE + K E+APEKV TAVLSTTA+AK RA++
Sbjct  1     TAIIGLNKDLKMPKFEFNSNAKPSLFAYPPETEEKKEKAPEKVATAVLSTTAKAKARAKK  60

Query  940   REKQQRRESMDVDQTPTTPKVSDQLPEKMETDEGAEKPEEEAKEGEKGAGDGPKKKAERE  999
             +EK++ +E  +               +KM+ DE  E+ E++ KE E+      KKK E+E
Sbjct  61    KEKEKEKEKEE---------------DKMDVDEEKEEKEKKEKEKEEKEKKAEKKKKEKE  105

Query  1000  KVGYELENMSRVLPAQLKYLTF-PDPRYEPV-KRPTGGVVVVVLDKNPDEPRETI  1052
                Y+LEN SRVLPAQLKY++F  D RY PV K+ TGG ++V+ D  PDEP E I
Sbjct  106   PTFYKLENPSRVLPAQLKYISFIKDSRYVPVKKKGTGG-IIVLKDTKPDEPEELI  159


>CDD:433376 pfam13646, HEAT_2, HEAT repeats.  This family includes multiple 
HEAT repeats.
Length=88

 Score = 67.4 bits (165),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 34/95 (36%), Positives = 49/95 (52%), Gaps = 8/95 (8%)

Query  693  VRKLLHVAVSDVNDDVRRVAVLSLGFILFRKYQSVPRMVELLSESYNPHVRYGAAMALGI  752
            +  LL   + D + +VR  A+ +LG       ++VP ++ELL +  +P VR  AA ALG 
Sbjct  1    LPALLQALLRDPDPEVRAAAIRALG--RIGDPEAVPALLELLKDE-DPAVRRAAAEALGK  57

Query  753  SCAGTGLDEAIDLLEPMLKDSTD-FVRQGALIALA  786
                 G  EA+  L  +L+D  D  VR  A  ALA
Sbjct  58   ----IGDPEALPALLELLRDDDDDVVRAAAAEALA  88



Lambda      K        H        a         alpha
   0.315    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1456276234


Query= TCONS_00034983

Length=726
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit R...  210     8e-65
CDD:433376 pfam13646, HEAT_2, HEAT repeats. This family includes ...  68.5    6e-15


>CDD:465613 pfam18004, RPN2_C, 26S proteasome regulatory subunit RPN2 C-terminal 
domain.  This is the C-terminal domain found in S. cerevisiae 
Rpn2 (26S proteasome regulatory subunit RPN2) as well 
as other eukaryotic species. A study revealed that the C-terminal 
52 residues of the Rpn2 C-terminal domain are responsible 
for mediating interactions with the ubiquitin-binding 
subunit Rpn13. Futhermore, the extreme C-terminal 20 or 21 
residues of Rpn2 (926-945 or 925-945) of S. cerevisiae, were 
shown to be equally effective at binding Rpn13. Multiple sequence 
alignments indicate that Rpn2 orthologs are highly conserved 
in this C-terminal region and share characteristic 
acidic, aromatic, and proline residues, suggesting a common 
function. In the structure of Rpn2 from S. cerevisiae, this 
region is exposed and disordered, and is thus accessible for 
associating with Rpn13. The Rpn2 binding surface of human Rpn13 
has been mapped by nuclear magnetic resonance titration 
to one surface of its Pru domain.
Length=159

 Score = 210 bits (536),  Expect = 8e-65, Method: Composition-based stats.
 Identities = 75/154 (49%), Positives = 105/154 (68%), Gaps = 16/154 (10%)

Query  572  TAVIGVDQKLEVPFFKFHSNTRPSLFDYPPEQQVKAEEAPEKVKTAVLSTTAQAKRRAQR  631
            TA+IG+++ L++P F+F+SN +PSLF YPPE + K E+APEKV TAVLSTTA+AK RA++
Sbjct  1    TAIIGLNKDLKMPKFEFNSNAKPSLFAYPPETEEKKEKAPEKVATAVLSTTAKAKARAKK  60

Query  632  REKQQRRESMDVDQTPTTPKVSDQLPEKMETDEGAEKPEEEAKEGEKGAGDGPKKKAERE  691
            +EK++ +E  +               +KM+ DE  E+ E++ KE E+      KKK E+E
Sbjct  61   KEKEKEKEKEE---------------DKMDVDEEKEEKEKKEKEKEEKEKKAEKKKKEKE  105

Query  692  KVGYELENMSRVLPAQLKYLTF-PDPRYEPVKRV  724
               Y+LEN SRVLPAQLKY++F  D RY PVK+ 
Sbjct  106  PTFYKLENPSRVLPAQLKYISFIKDSRYVPVKKK  139


>CDD:433376 pfam13646, HEAT_2, HEAT repeats.  This family includes multiple 
HEAT repeats.
Length=88

 Score = 68.5 bits (168),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 34/95 (36%), Positives = 49/95 (52%), Gaps = 8/95 (8%)

Query  385  VRKLLHVAVSDVNDDVRRVAVLSLGFILFRKYQSVPRMVELLSESYNPHVRYGAAMALGI  444
            +  LL   + D + +VR  A+ +LG       ++VP ++ELL +  +P VR  AA ALG 
Sbjct  1    LPALLQALLRDPDPEVRAAAIRALG--RIGDPEAVPALLELL-KDEDPAVRRAAAEALGK  57

Query  445  SCAGTGLDEAIDLLEPMLKDSTD-FVRQGALIALA  478
                 G  EA+  L  +L+D  D  VR  A  ALA
Sbjct  58   ----IGDPEALPALLELLRDDDDDVVRAAAAEALA  88



Lambda      K        H        a         alpha
   0.316    0.133    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0617    0.140     1.90     42.6     43.6 

Effective search space used: 919656064


Query= TCONS_00030465

Length=366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-te...  155     5e-47
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  93.9    2e-24


>CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal 
domain.  C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, 
four helical up-and-down bundle.
Length=149

 Score = 155 bits (393),  Expect = 5e-47, Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 75/157 (48%), Gaps = 9/157 (6%)

Query  198  NQGFKVIMTNFNHERIGIVIQCVRFARVCYEEAMKYAHKRRTFGKKLIDHPVIRMKLAHM  257
             +GF+V M   NHER+ I    +  AR   +EA+ YA +R+ FG+ LID  ++R KLA M
Sbjct  1    GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYARRRKAFGRPLIDFQLVRHKLAEM  60

Query  258  ARQIEATYNWLENIIYQCQSMEETEAMLKLGGAIAGLKAQATTTFEFCAREASQIFGGLS  317
            A +IEA    +             +A    G   +  K  A+      A  A Q+ GG  
Sbjct  61   AAEIEAARLLVYRAAEAL------DAGGPDGAEASMAKLYASEAAVEVADLAMQLHGGYG  114

Query  318  YSRGGQGGKVERLYRDVRAYAIPGGSEEIMLDLSVRQ  354
            Y R      VERLYRD R   I  G+ EI  ++  R+
Sbjct  115  YLR---EYPVERLYRDARVLRIGEGTSEIQRNIIARR  148


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 93.9 bits (234),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 41/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query  91   CLAITEPDAGSDVANLTCEAKLSPDGKHYIVNGEKKWITNGVWSDYFTTAVRTGGPGM-N  149
              A+TEP AGSDVA+L   A    DG  +++NG K WITN   +D F    RTGG     
Sbjct  1    AFALTEPGAGSDVASLKTTA-ADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHG  59

Query  150  GISVLLIEREAGGVSTRRM-DCQGVWSSGTTYVTFE  184
            GIS+ L+ ++A GVS RR+    GV    T  + F+
Sbjct  60   GISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95



Lambda      K        H        a         alpha
   0.321    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00034984

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-te...  158     4e-47
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  95.8    1e-24
CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-te...  83.3    7e-20


>CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal 
domain.  C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, 
four helical up-and-down bundle.
Length=149

 Score = 158 bits (403),  Expect = 4e-47, Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 75/157 (48%), Gaps = 9/157 (6%)

Query  348  NQGFKVIMTNFNHERIGIVIQCVRFARVCYEEAMKYAHKRRTFGKKLIDHPVIRMKLAHM  407
             +GF+V M   NHER+ I    +  AR   +EA+ YA +R+ FG+ LID  ++R KLA M
Sbjct  1    GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYARRRKAFGRPLIDFQLVRHKLAEM  60

Query  408  ARQIEATYNWLENIIYQCQSMEETEAMLKLGGAIAGLKAQATTTFEFCAREASQIFGGLS  467
            A +IEA    +             +A    G   +  K  A+      A  A Q+ GG  
Sbjct  61   AAEIEAARLLVYRAAEAL------DAGGPDGAEASMAKLYASEAAVEVADLAMQLHGGYG  114

Query  468  YSRGGQGGKVERLYRDVRAYAIPGGSEEIMLDLSVRQ  504
            Y R      VERLYRD R   I  G+ EI  ++  R+
Sbjct  115  YLR---EYPVERLYRDARVLRIGEGTSEIQRNIIARR  148


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 95.8 bits (239),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 41/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query  241  CLAITEPDAGSDVANLTCEAKLSPDGKHYIVNGEKKWITNGVWSDYFTTAVRTGGPGM-N  299
              A+TEP AGSDVA+L   A    DG  +++NG K WITN   +D F    RTGG     
Sbjct  1    AFALTEPGAGSDVASLKTTA-ADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHG  59

Query  300  GISVLLIEREAGGVSTRRM-DCQGVWSSGTTYVTFE  334
            GIS+ L+ ++A GVS RR+    GV    T  + F+
Sbjct  60   GISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95


>CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal 
domain.  The N-terminal domain of Acyl-CoA dehydrogenase is 
an all-alpha domain.
Length=113

 Score = 83.3 bits (207),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 61/131 (47%), Gaps = 23/131 (18%)

Query  112  NQTHAALRAEVRQWVETEIEPYVTEWDEAKKVPDSVYKQMGERGYLAGLLGTKYPIQHTR  171
             +   ALR  VR++ E EI P+  EWDE  + P  ++K++GE G L   +          
Sbjct  1    TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITI----------  50

Query  172  NRVQSVAPE-----NWDLFHEMLLTDELSRAGSGGLVWNLIGGFGIGCPPLVKFGKKALV  226
                   PE       D     L+ +EL+RA +   +   +    +G PP+++FG +   
Sbjct  51   -------PEEYGGAGLDYLAYALVAEELARADASVALALSVHS-SLGAPPILRFGTEEQK  102

Query  227  DRILPGILAGD  237
            +R LP + +G+
Sbjct  103  ERYLPKLASGE  113



Lambda      K        H        a         alpha
   0.318    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00034985

Length=708
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397481 pfam03439, Spt5-NGN, Early transcription elongation fa...  109     2e-29
CDD:463406 pfam11942, Spt5_N, Spt5 transcription elongation facto...  79.6    1e-18


>CDD:397481 pfam03439, Spt5-NGN, Early transcription elongation factor of 
RNA pol II, NGN section.  Spt5p and prokaryotic NusG are shown 
to contain a novel 'NGN' domain. The combined NGN and KOW 
motif regions of Spt5 form the binding domain with Spt4. Spt5 
complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 
complex regulates early transcription elongation by RNA 
polymerase II and has an imputed role in pre-mRNA processing 
via its physical association with mRNA capping enzymes. The 
Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer 
bearing a trypsin-resistant Spt4-binding domain within 
the Spt5 subunit.
Length=84

 Score = 109 bits (275),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (55%), Gaps = 4/88 (5%)

Query  78   SIWGVRCKAGKEREVVFAIQKRIEERPPGSRKPIRIISAFERGGAMSGYIYVEARRQADV  137
             IW V+C  G+EREV  ++ ++I          + I S F   G + GYIYVEA RQA V
Sbjct  1    KIWAVKCTPGQEREVALSLMRKILALAK--TNNLGIYSVFAPDG-LKGYIYVEADRQAAV  57

Query  138  MEALEDMSNVYPRTKMILVPVREMPDLL  165
              ALE + NV       LVP++EM  LL
Sbjct  58   KRALEGIPNVRGLV-PGLVPIKEMEHLL  84


>CDD:463406 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic 
N-terminal.  This is the very acidic N-terminal region of 
the early transcription elongation factor Spt5. The Spt5-Spt4 
complex regulates early transcription elongation by RNA polymerase 
II and has an imputed role in pre-mRNA processing 
via its physical association with mRNA capping enzymes. The 
actual function of this N-terminal domain is not known although 
it is dispensable for binding to Spt4.
Length=97

 Score = 79.6 bits (197),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 7/70 (10%)

Query  6   EMHPDDLDALPAGADTDDRRHRQLDRQRELEASMDAEKQAQLLKERYGRNRAAATD---A  62
           +   +D +        DDRRHR+LDR+RELE   DAE+ A+ LKERYGR+ + A      
Sbjct  32  DEEDEDEED----GRRDDRRHRELDRRRELEEDEDAEEIAEYLKERYGRSSSDAYRGDAE  87

Query  63  VVVPKRLLLP  72
             VP+RLLLP
Sbjct  88  EGVPQRLLLP  97



Lambda      K        H        a         alpha
   0.316    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906995850


Query= TCONS_00030466

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-te...  162     4e-48
CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  96.2    1e-24
CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid bin...  85.0    6e-21
CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-te...  84.4    3e-20


>CDD:395354 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal 
domain.  C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, 
four helical up-and-down bundle.
Length=149

 Score = 162 bits (411),  Expect = 4e-48, Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 75/157 (48%), Gaps = 9/157 (6%)

Query  373  NQGFKVIMTNFNHERIGIVIQCVRFARVCYEEAMKYAHKRRTFGKKLIDHPVIRMKLAHM  432
             +GF+V M   NHER+ I    +  AR   +EA+ YA +R+ FG+ LID  ++R KLA M
Sbjct  1    GRGFRVAMETLNHERLAIAAMALGLARRALDEALAYARRRKAFGRPLIDFQLVRHKLAEM  60

Query  433  ARQIEATYNWLENIIYQCQSMEETEAMLKLGGAIAGLKAQATTTFEFCAREASQIFGGLS  492
            A +IEA    +             +A    G   +  K  A+      A  A Q+ GG  
Sbjct  61   AAEIEAARLLVYRAAEAL------DAGGPDGAEASMAKLYASEAAVEVADLAMQLHGGYG  114

Query  493  YSRGGQGGKVERLYRDVRAYAIPGGSEEIMLDLSVRQ  529
            Y R      VERLYRD R   I  G+ EI  ++  R+
Sbjct  115  YLR---EYPVERLYRDARVLRIGEGTSEIQRNIIARR  148


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 96.2 bits (240),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 41/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query  266  CLAITEPDAGSDVANLTCEAKLSPDGKHYIVNGEKKWITNGVWSDYFTTAVRTGGPGM-N  324
              A+TEP AGSDVA+L   A    DG  +++NG K WITN   +D F    RTGG     
Sbjct  1    AFALTEPGAGSDVASLKTTA-ADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHG  59

Query  325  GISVLLIEREAGGVSTRRM-DCQGVWSSGTTYVTFE  359
            GIS+ L+ ++A GVS RR+    GV    T  + F+
Sbjct  60   GISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95


>CDD:459698 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain. 
 This family includes heme binding domains from a diverse 
range of proteins. This family also includes proteins that 
bind to steroids. The family includes progesterone receptors. 
Many members of this subfamily are membrane anchored by 
an N-terminal transmembrane alpha helix. This family also includes 
a domain in some chitin synthases. There is no known 
ligand for this domain in the chitin synthases.
Length=74

 Score = 85.0 bits (211),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query  6   SKDDVASHNKPDNLWVIIDEDVYDLTKFQDDHPGGKKILSRVAGKDASKQFWKY-HNEGI  64
           + ++++ HN   + WV I+  VYD+TKF  +HPGG+ ++   AGKDA+  F    H+E  
Sbjct  1   TLEELSKHNGDGDCWVAINGKVYDVTKFLKEHPGGEDVILSAAGKDATDAFEAIGHSEDA  60

Query  65  LKKYKAQLQIGSLD  78
            +K   + +IG L 
Sbjct  61  AEKLLKKYRIGELA  74


>CDD:460686 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal 
domain.  The N-terminal domain of Acyl-CoA dehydrogenase is 
an all-alpha domain.
Length=113

 Score = 84.4 bits (210),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 61/131 (47%), Gaps = 23/131 (18%)

Query  137  NQTHAALRAEVRQWVETEIEPYVTEWDEAKKVPDSVYKQMGERGYLAGLLGTKYPIQHTR  196
             +   ALR  VR++ E EI P+  EWDE  + P  ++K++GE G L   +          
Sbjct  1    TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITI----------  50

Query  197  NRVQSVAPE-----NWDLFHEMLLTDELSRAGSGGLVWNLIGGFGIGCPPLVKFGKKALV  251
                   PE       D     L+ +EL+RA +   +   +    +G PP+++FG +   
Sbjct  51   -------PEEYGGAGLDYLAYALVAEELARADASVALALSVHS-SLGAPPILRFGTEEQK  102

Query  252  DRILPGILAGD  262
            +R LP + +G+
Sbjct  103  ERYLPKLASGE  113



Lambda      K        H        a         alpha
   0.318    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00030467

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, midd...  92.3    5e-25


>CDD:460685 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. 
 Central domain of Acyl-CoA dehydrogenase has a beta-barrel 
fold.
Length=95

 Score = 92.3 bits (230),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 41/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query  91   CLAITEPDAGSDVANLTCEAKLSPDGKHYIVNGEKKWITNGVWSDYFTTAVRTGGPGM-N  149
              A+TEP AGSDVA+L   A    DG  +++NG K WITN   +D F    RTGG     
Sbjct  1    AFALTEPGAGSDVASLKTTA-ADGDGGGWVLNGTKWWITNAGIADLFLVLARTGGDDRHG  59

Query  150  GISVLLIEREAGGVSTRRM-DCQGVWSSGTTYVTFE  184
            GIS+ L+ ++A GVS RR+    GV    T  + F+
Sbjct  60   GISLFLVPKDAPGVSVRRIETKLGVRGLPTGELVFD  95



Lambda      K        H        a         alpha
   0.319    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00030468

Length=1058
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397481 pfam03439, Spt5-NGN, Early transcription elongation fa...  110     2e-29
CDD:372327 pfam12815, CTD, Spt5 C-terminal nonapeptide repeat bin...  98.7    2e-25
CDD:463406 pfam11942, Spt5_N, Spt5 transcription elongation facto...  78.8    4e-18


>CDD:397481 pfam03439, Spt5-NGN, Early transcription elongation factor of 
RNA pol II, NGN section.  Spt5p and prokaryotic NusG are shown 
to contain a novel 'NGN' domain. The combined NGN and KOW 
motif regions of Spt5 form the binding domain with Spt4. Spt5 
complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 
complex regulates early transcription elongation by RNA 
polymerase II and has an imputed role in pre-mRNA processing 
via its physical association with mRNA capping enzymes. The 
Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer 
bearing a trypsin-resistant Spt4-binding domain within 
the Spt5 subunit.
Length=84

 Score = 110 bits (277),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (55%), Gaps = 4/88 (5%)

Query  242  SIWGVRCKAGKEREVVFAIQKRIEERPPGSRKPIRIISAFERGGAMSGYIYVEARRQADV  301
             IW V+C  G+EREV  ++ ++I          + I S F   G + GYIYVEA RQA V
Sbjct  1    KIWAVKCTPGQEREVALSLMRKILALAK--TNNLGIYSVFAPDG-LKGYIYVEADRQAAV  57

Query  302  MEALEDMSNVYPRTKMILVPVREMPDLL  329
              ALE + NV       LVP++EM  LL
Sbjct  58   KRALEGIPNVRGLV-PGLVPIKEMEHLL  84


>CDD:372327 pfam12815, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4. 
 The C-terminal domain of the transcription elongation factor 
protein Spt5 is necessary for binding to Spt4 to form 
the functional complex that regulates early transcription elongation 
by RNA polymerase II. The complex may be involved in 
pre-mRNA processing through its association with mRNA capping 
enzymes. This CTD domain carries a regular nonapeptide repeat 
that can be present in up to 18 copies, as in S. pombe. 
The repeat has a characteristic TPA motif.
Length=71

 Score = 98.7 bits (246),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 45/87 (52%), Positives = 51/87 (59%), Gaps = 18/87 (21%)

Query  865  SARTPAWAGISGSRTPAWKMDGSRTSNPYDGSRTAYGGAGSRTPAWNAGARTPYDSGSGS  924
             +RTPA+    GSRTPAW  DGSRT         AYGGAG RTPA+N G +TP   G   
Sbjct  1    GSRTPAYNSAGGSRTPAWGADGSRT--------PAYGGAGGRTPAYNQGGKTPAWGG---  49

Query  925  SGFDAFAAGSRTPAWGGANAGGRTPAW  951
                   AGSRTPA+ GA  G RTPA+
Sbjct  50   -------AGSRTPAYYGAWGGSRTPAY  69


 Score = 67.9 bits (166),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 42/75 (56%), Gaps = 13/75 (17%)

Query  840  SGWSGGRTPMAAADSSRTPAWGGASSARTPAWAGISGSRTPAWKMDGSRTSNPYDGSRTA  899
            +   G RTP   AD SRTPA+GGA   RTPA+    G +TPAW   GSRT         A
Sbjct  8    NSAGGSRTPAWGADGSRTPAYGGAGG-RTPAYN--QGGKTPAWGGAGSRTP--------A  56

Query  900  YGGA--GSRTPAWNA  912
            Y GA  GSRTPA+  
Sbjct  57   YYGAWGGSRTPAYGG  71


>CDD:463406 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic 
N-terminal.  This is the very acidic N-terminal region of 
the early transcription elongation factor Spt5. The Spt5-Spt4 
complex regulates early transcription elongation by RNA polymerase 
II and has an imputed role in pre-mRNA processing 
via its physical association with mRNA capping enzymes. The 
actual function of this N-terminal domain is not known although 
it is dispensable for binding to Spt4.
Length=97

 Score = 78.8 bits (195),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 7/70 (10%)

Query  170  EMHPDDLDALPAGADTDDRRHRQLDRQRELEASMDAEKQAQLLKERYGRNRAAATD---A  226
            +   +D +        DDRRHR+LDR+RELE   DAE+ A+ LKERYGR+ + A      
Sbjct  32   DEEDEDEED----GRRDDRRHRELDRRRELEEDEDAEEIAEYLKERYGRSSSDAYRGDAE  87

Query  227  VVVPKRLLLP  236
              VP+RLLLP
Sbjct  88   EGVPQRLLLP  97



Lambda      K        H        a         alpha
   0.310    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1362072712


Query= TCONS_00034987

Length=1058
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397481 pfam03439, Spt5-NGN, Early transcription elongation fa...  110     2e-29
CDD:372327 pfam12815, CTD, Spt5 C-terminal nonapeptide repeat bin...  98.7    2e-25
CDD:463406 pfam11942, Spt5_N, Spt5 transcription elongation facto...  78.8    4e-18


>CDD:397481 pfam03439, Spt5-NGN, Early transcription elongation factor of 
RNA pol II, NGN section.  Spt5p and prokaryotic NusG are shown 
to contain a novel 'NGN' domain. The combined NGN and KOW 
motif regions of Spt5 form the binding domain with Spt4. Spt5 
complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 
complex regulates early transcription elongation by RNA 
polymerase II and has an imputed role in pre-mRNA processing 
via its physical association with mRNA capping enzymes. The 
Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer 
bearing a trypsin-resistant Spt4-binding domain within 
the Spt5 subunit.
Length=84

 Score = 110 bits (277),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (55%), Gaps = 4/88 (5%)

Query  242  SIWGVRCKAGKEREVVFAIQKRIEERPPGSRKPIRIISAFERGGAMSGYIYVEARRQADV  301
             IW V+C  G+EREV  ++ ++I          + I S F   G + GYIYVEA RQA V
Sbjct  1    KIWAVKCTPGQEREVALSLMRKILALAK--TNNLGIYSVFAPDG-LKGYIYVEADRQAAV  57

Query  302  MEALEDMSNVYPRTKMILVPVREMPDLL  329
              ALE + NV       LVP++EM  LL
Sbjct  58   KRALEGIPNVRGLV-PGLVPIKEMEHLL  84


>CDD:372327 pfam12815, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4. 
 The C-terminal domain of the transcription elongation factor 
protein Spt5 is necessary for binding to Spt4 to form 
the functional complex that regulates early transcription elongation 
by RNA polymerase II. The complex may be involved in 
pre-mRNA processing through its association with mRNA capping 
enzymes. This CTD domain carries a regular nonapeptide repeat 
that can be present in up to 18 copies, as in S. pombe. 
The repeat has a characteristic TPA motif.
Length=71

 Score = 98.7 bits (246),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 45/87 (52%), Positives = 51/87 (59%), Gaps = 18/87 (21%)

Query  865  SARTPAWAGISGSRTPAWKMDGSRTSNPYDGSRTAYGGAGSRTPAWNAGARTPYDSGSGS  924
             +RTPA+    GSRTPAW  DGSRT         AYGGAG RTPA+N G +TP   G   
Sbjct  1    GSRTPAYNSAGGSRTPAWGADGSRT--------PAYGGAGGRTPAYNQGGKTPAWGG---  49

Query  925  SGFDAFAAGSRTPAWGGANAGGRTPAW  951
                   AGSRTPA+ GA  G RTPA+
Sbjct  50   -------AGSRTPAYYGAWGGSRTPAY  69


 Score = 67.9 bits (166),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 42/75 (56%), Gaps = 13/75 (17%)

Query  840  SGWSGGRTPMAAADSSRTPAWGGASSARTPAWAGISGSRTPAWKMDGSRTSNPYDGSRTA  899
            +   G RTP   AD SRTPA+GGA   RTPA+    G +TPAW   GSRT         A
Sbjct  8    NSAGGSRTPAWGADGSRTPAYGGAGG-RTPAYN--QGGKTPAWGGAGSRTP--------A  56

Query  900  YGGA--GSRTPAWNA  912
            Y GA  GSRTPA+  
Sbjct  57   YYGAWGGSRTPAYGG  71


>CDD:463406 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic 
N-terminal.  This is the very acidic N-terminal region of 
the early transcription elongation factor Spt5. The Spt5-Spt4 
complex regulates early transcription elongation by RNA polymerase 
II and has an imputed role in pre-mRNA processing 
via its physical association with mRNA capping enzymes. The 
actual function of this N-terminal domain is not known although 
it is dispensable for binding to Spt4.
Length=97

 Score = 78.8 bits (195),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 7/70 (10%)

Query  170  EMHPDDLDALPAGADTDDRRHRQLDRQRELEASMDAEKQAQLLKERYGRNRAAATD---A  226
            +   +D +        DDRRHR+LDR+RELE   DAE+ A+ LKERYGR+ + A      
Sbjct  32   DEEDEDEED----GRRDDRRHRELDRRRELEEDEDAEEIAEYLKERYGRSSSDAYRGDAE  87

Query  227  VVVPKRLLLP  236
              VP+RLLLP
Sbjct  88   EGVPQRLLLP  97



Lambda      K        H        a         alpha
   0.310    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1362072712


Query= TCONS_00030469

Length=708
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397481 pfam03439, Spt5-NGN, Early transcription elongation fa...  109     2e-29
CDD:463406 pfam11942, Spt5_N, Spt5 transcription elongation facto...  79.6    1e-18


>CDD:397481 pfam03439, Spt5-NGN, Early transcription elongation factor of 
RNA pol II, NGN section.  Spt5p and prokaryotic NusG are shown 
to contain a novel 'NGN' domain. The combined NGN and KOW 
motif regions of Spt5 form the binding domain with Spt4. Spt5 
complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 
complex regulates early transcription elongation by RNA 
polymerase II and has an imputed role in pre-mRNA processing 
via its physical association with mRNA capping enzymes. The 
Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer 
bearing a trypsin-resistant Spt4-binding domain within 
the Spt5 subunit.
Length=84

 Score = 109 bits (275),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (55%), Gaps = 4/88 (5%)

Query  78   SIWGVRCKAGKEREVVFAIQKRIEERPPGSRKPIRIISAFERGGAMSGYIYVEARRQADV  137
             IW V+C  G+EREV  ++ ++I          + I S F   G + GYIYVEA RQA V
Sbjct  1    KIWAVKCTPGQEREVALSLMRKILALAK--TNNLGIYSVFAPDG-LKGYIYVEADRQAAV  57

Query  138  MEALEDMSNVYPRTKMILVPVREMPDLL  165
              ALE + NV       LVP++EM  LL
Sbjct  58   KRALEGIPNVRGLV-PGLVPIKEMEHLL  84


>CDD:463406 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic 
N-terminal.  This is the very acidic N-terminal region of 
the early transcription elongation factor Spt5. The Spt5-Spt4 
complex regulates early transcription elongation by RNA polymerase 
II and has an imputed role in pre-mRNA processing 
via its physical association with mRNA capping enzymes. The 
actual function of this N-terminal domain is not known although 
it is dispensable for binding to Spt4.
Length=97

 Score = 79.6 bits (197),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 7/70 (10%)

Query  6   EMHPDDLDALPAGADTDDRRHRQLDRQRELEASMDAEKQAQLLKERYGRNRAAATD---A  62
           +   +D +        DDRRHR+LDR+RELE   DAE+ A+ LKERYGR+ + A      
Sbjct  32  DEEDEDEED----GRRDDRRHRELDRRRELEEDEDAEEIAEYLKERYGRSSSDAYRGDAE  87

Query  63  VVVPKRLLLP  72
             VP+RLLLP
Sbjct  88  EGVPQRLLLP  97



Lambda      K        H        a         alpha
   0.316    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906995850


Query= TCONS_00030470

Length=872
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397481 pfam03439, Spt5-NGN, Early transcription elongation fa...  110     2e-29
CDD:463406 pfam11942, Spt5_N, Spt5 transcription elongation facto...  75.4    5e-17


>CDD:397481 pfam03439, Spt5-NGN, Early transcription elongation factor of 
RNA pol II, NGN section.  Spt5p and prokaryotic NusG are shown 
to contain a novel 'NGN' domain. The combined NGN and KOW 
motif regions of Spt5 form the binding domain with Spt4. Spt5 
complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 
complex regulates early transcription elongation by RNA 
polymerase II and has an imputed role in pre-mRNA processing 
via its physical association with mRNA capping enzymes. The 
Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer 
bearing a trypsin-resistant Spt4-binding domain within 
the Spt5 subunit.
Length=84

 Score = 110 bits (277),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (55%), Gaps = 4/88 (5%)

Query  242  SIWGVRCKAGKEREVVFAIQKRIEERPPGSRKPIRIISAFERGGAMSGYIYVEARRQADV  301
             IW V+C  G+EREV  ++ ++I          + I S F   G + GYIYVEA RQA V
Sbjct  1    KIWAVKCTPGQEREVALSLMRKILALAK--TNNLGIYSVFAPDG-LKGYIYVEADRQAAV  57

Query  302  MEALEDMSNVYPRTKMILVPVREMPDLL  329
              ALE + NV       LVP++EM  LL
Sbjct  58   KRALEGIPNVRGLV-PGLVPIKEMEHLL  84


>CDD:463406 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic 
N-terminal.  This is the very acidic N-terminal region of 
the early transcription elongation factor Spt5. The Spt5-Spt4 
complex regulates early transcription elongation by RNA polymerase 
II and has an imputed role in pre-mRNA processing 
via its physical association with mRNA capping enzymes. The 
actual function of this N-terminal domain is not known although 
it is dispensable for binding to Spt4.
Length=97

 Score = 75.4 bits (186),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 7/70 (10%)

Query  170  EMHPDDLDALPAGADTDDRRHRQLDRQRELEASMDAEKQAQLLKERYGRNRAAATD---A  226
            +   +D +        DDRRHR+LDR+RELE   DAE+ A+ LKERYGR+ + A      
Sbjct  32   DEEDEDEED----GRRDDRRHRELDRRRELEEDEDAEEIAEYLKERYGRSSSDAYRGDAE  87

Query  227  VVVPKRLLLP  236
              VP+RLLLP
Sbjct  88   EGVPQRLLLP  97



Lambda      K        H        a         alpha
   0.311    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1115394378


Query= TCONS_00034988

Length=894
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397481 pfam03439, Spt5-NGN, Early transcription elongation fa...  110     2e-29
CDD:372327 pfam12815, CTD, Spt5 C-terminal nonapeptide repeat bin...  96.7    6e-25
CDD:463406 pfam11942, Spt5_N, Spt5 transcription elongation facto...  82.7    1e-19


>CDD:397481 pfam03439, Spt5-NGN, Early transcription elongation factor of 
RNA pol II, NGN section.  Spt5p and prokaryotic NusG are shown 
to contain a novel 'NGN' domain. The combined NGN and KOW 
motif regions of Spt5 form the binding domain with Spt4. Spt5 
complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 
complex regulates early transcription elongation by RNA 
polymerase II and has an imputed role in pre-mRNA processing 
via its physical association with mRNA capping enzymes. The 
Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer 
bearing a trypsin-resistant Spt4-binding domain within 
the Spt5 subunit.
Length=84

 Score = 110 bits (277),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (55%), Gaps = 4/88 (5%)

Query  78   SIWGVRCKAGKEREVVFAIQKRIEERPPGSRKPIRIISAFERGGAMSGYIYVEARRQADV  137
             IW V+C  G+EREV  ++ ++I          + I S F   G + GYIYVEA RQA V
Sbjct  1    KIWAVKCTPGQEREVALSLMRKILALAK--TNNLGIYSVFAPDG-LKGYIYVEADRQAAV  57

Query  138  MEALEDMSNVYPRTKMILVPVREMPDLL  165
              ALE + NV       LVP++EM  LL
Sbjct  58   KRALEGIPNVRGLV-PGLVPIKEMEHLL  84


>CDD:372327 pfam12815, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4. 
 The C-terminal domain of the transcription elongation factor 
protein Spt5 is necessary for binding to Spt4 to form 
the functional complex that regulates early transcription elongation 
by RNA polymerase II. The complex may be involved in 
pre-mRNA processing through its association with mRNA capping 
enzymes. This CTD domain carries a regular nonapeptide repeat 
that can be present in up to 18 copies, as in S. pombe. 
The repeat has a characteristic TPA motif.
Length=71

 Score = 96.7 bits (241),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 45/87 (52%), Positives = 51/87 (59%), Gaps = 18/87 (21%)

Query  701  SARTPAWAGISGSRTPAWKMDGSRTSNPYDGSRTAYGGAGSRTPAWNAGARTPYDSGSGS  760
             +RTPA+    GSRTPAW  DGSRT         AYGGAG RTPA+N G +TP   G   
Sbjct  1    GSRTPAYNSAGGSRTPAWGADGSRT--------PAYGGAGGRTPAYNQGGKTPAWGG---  49

Query  761  SGFDAFAAGSRTPAWGGANAGGRTPAW  787
                   AGSRTPA+ GA  G RTPA+
Sbjct  50   -------AGSRTPAYYGAWGGSRTPAY  69


 Score = 66.3 bits (162),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 42/75 (56%), Gaps = 13/75 (17%)

Query  676  SGWSGGRTPMAAADSSRTPAWGGASSARTPAWAGISGSRTPAWKMDGSRTSNPYDGSRTA  735
            +   G RTP   AD SRTPA+GGA   RTPA+    G +TPAW   GSRT         A
Sbjct  8    NSAGGSRTPAWGADGSRTPAYGGAGG-RTPAYN--QGGKTPAWGGAGSRTP--------A  56

Query  736  YGGA--GSRTPAWNA  748
            Y GA  GSRTPA+  
Sbjct  57   YYGAWGGSRTPAYGG  71


>CDD:463406 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic 
N-terminal.  This is the very acidic N-terminal region of 
the early transcription elongation factor Spt5. The Spt5-Spt4 
complex regulates early transcription elongation by RNA polymerase 
II and has an imputed role in pre-mRNA processing 
via its physical association with mRNA capping enzymes. The 
actual function of this N-terminal domain is not known although 
it is dispensable for binding to Spt4.
Length=97

 Score = 82.7 bits (205),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 7/70 (10%)

Query  6   EMHPDDLDALPAGADTDDRRHRQLDRQRELEASMDAEKQAQLLKERYGRNRAAATD---A  62
           +   +D +        DDRRHR+LDR+RELE   DAE+ A+ LKERYGR+ + A      
Sbjct  32  DEEDEDEED----GRRDDRRHRELDRRRELEEDEDAEEIAEYLKERYGRSSSDAYRGDAE  87

Query  63  VVVPKRLLLP  72
             VP+RLLLP
Sbjct  88  EGVPQRLLLP  97



Lambda      K        H        a         alpha
   0.313    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1146975686


Query= TCONS_00034989

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426413 pfam01757, Acyl_transf_3, Acyltransferase family. This...  81.1    3e-17


>CDD:426413 pfam01757, Acyl_transf_3, Acyltransferase family.  This family 
includes a range of acyltransferase enzymes. This domain is 
found in many as yet uncharacterized C. elegans proteins and 
it is approximately 300 amino acids long.
Length=330

 Score = 81.1 bits (200),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 79/407 (19%), Positives = 131/407 (32%), Gaps = 94/407 (23%)

Query  101  IAALDGLRGWACLLVFNFHFLFTYTWKVAVGWGFNNENYGILHLPIIHLLVSGHIMVAIF  160
            IA LD LRG A LLV   H L  + +                 L ++ L+  G   V +F
Sbjct  1    IAYLDLLRGIAILLVVIGHVLLAFGYGGFGLPLE---------LALLFLVFLGRFGVPLF  51

Query  161  FVISGYVLSYKPLKMIRTRSWEQTLATLASSTFRRGLRLYIPSIVGIVLVFIAVRLGVYN  220
            F ISGY+L+    +      +            +R LRL IP ++  +L  + + L    
Sbjct  52   FFISGYLLAALRRRRRSLFKF----------IKKRLLRLLIPYLLWSLLYALLLLLVAG-  100

Query  221  YSLKVLNEGQTILGTNEQHPPLMKSFTKQFWDMYLTVVHLMDPWNWALYYNYYNPHLWTI  280
                                            +   ++ L+   N  L++   N HLW +
Sbjct  101  ------------------------------LSVGGALLLLLLLNNGPLFFLGVNGHLWFL  130

Query  281  PVEFRCSIVLFLTIIATSRVTAVARLSLVSGLVWFCMRWG----------------RWDV  324
               F   ++L L +    ++     L L+  L+   + +                    +
Sbjct  131  SALFVFYLLLPLLLRLLRKLKKSLLLLLLLLLLLLFLLYILILLVGVPFTVLVLFIFLYL  190

Query  325  VLFLSGMLMAEADLINGTWERPSVDEKPVHRGRSTLSRLSSRKFWIALFIFGLYLGSAPN  384
              FL G L+A                      +   S+       I L +  L L     
Sbjct  191  PFFLLGALLARY-------------------RKRIRSKRLKLLIIILLALALLALIL---  228

Query  385  TGYKWTPFYMWTWKITPKTYPEPHRFPQTLGAVLIVFSINHSKDIQKLFVNRLSQYLGKI  444
                   F      +  + Y  P      LG +L++       +++ L   RL  YLGK 
Sbjct  229  ----LLLFLFGLDPLALEFYGYPSLLLLLLGILLLLLLALLLANLRSL--RRLLSYLGKY  282

Query  445  SFAFYIVHGPILHSLGYSLMPNIWKITGKQTDFQYCLGFLIGWLICL  491
            SF  Y++H PIL  LG  L      +          +  L+  ++  
Sbjct  283  SFGIYLIHPPILLLLGKLLGLLGLPLLPILLFLLLLVLTLLVSVLLA  329



Lambda      K        H        a         alpha
   0.326    0.141    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00034990

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426413 pfam01757, Acyl_transf_3, Acyltransferase family. This...  81.1    3e-17


>CDD:426413 pfam01757, Acyl_transf_3, Acyltransferase family.  This family 
includes a range of acyltransferase enzymes. This domain is 
found in many as yet uncharacterized C. elegans proteins and 
it is approximately 300 amino acids long.
Length=330

 Score = 81.1 bits (200),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 79/407 (19%), Positives = 131/407 (32%), Gaps = 94/407 (23%)

Query  101  IAALDGLRGWACLLVFNFHFLFTYTWKVAVGWGFNNENYGILHLPIIHLLVSGHIMVAIF  160
            IA LD LRG A LLV   H L  + +                 L ++ L+  G   V +F
Sbjct  1    IAYLDLLRGIAILLVVIGHVLLAFGYGGFGLPLE---------LALLFLVFLGRFGVPLF  51

Query  161  FVISGYVLSYKPLKMIRTRSWEQTLATLASSTFRRGLRLYIPSIVGIVLVFIAVRLGVYN  220
            F ISGY+L+    +      +            +R LRL IP ++  +L  + + L    
Sbjct  52   FFISGYLLAALRRRRRSLFKF----------IKKRLLRLLIPYLLWSLLYALLLLLVAG-  100

Query  221  YSLKVLNEGQTILGTNEQHPPLMKSFTKQFWDMYLTVVHLMDPWNWALYYNYYNPHLWTI  280
                                            +   ++ L+   N  L++   N HLW +
Sbjct  101  ------------------------------LSVGGALLLLLLLNNGPLFFLGVNGHLWFL  130

Query  281  PVEFRCSIVLFLTIIATSRVTAVARLSLVSGLVWFCMRWG----------------RWDV  324
               F   ++L L +    ++     L L+  L+   + +                    +
Sbjct  131  SALFVFYLLLPLLLRLLRKLKKSLLLLLLLLLLLLFLLYILILLVGVPFTVLVLFIFLYL  190

Query  325  VLFLSGMLMAEADLINGTWERPSVDEKPVHRGRSTLSRLSSRKFWIALFIFGLYLGSAPN  384
              FL G L+A                      +   S+       I L +  L L     
Sbjct  191  PFFLLGALLARY-------------------RKRIRSKRLKLLIIILLALALLALIL---  228

Query  385  TGYKWTPFYMWTWKITPKTYPEPHRFPQTLGAVLIVFSINHSKDIQKLFVNRLSQYLGKI  444
                   F      +  + Y  P      LG +L++       +++ L   RL  YLGK 
Sbjct  229  ----LLLFLFGLDPLALEFYGYPSLLLLLLGILLLLLLALLLANLRSL--RRLLSYLGKY  282

Query  445  SFAFYIVHGPILHSLGYSLMPNIWKITGKQTDFQYCLGFLIGWLICL  491
            SF  Y++H PIL  LG  L      +          +  L+  ++  
Sbjct  283  SFGIYLIHPPILLLLGKLLGLLGLPLLPILLFLLLLVLTLLVSVLLA  329



Lambda      K        H        a         alpha
   0.326    0.141    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00034991

Length=896


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1149846714


Query= TCONS_00030472

Length=896


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1149846714


Query= TCONS_00034992

Length=404


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0682    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00030474

Length=404


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00030473

Length=896


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1149846714


Query= TCONS_00030475

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00030476

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00030477

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00030479

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  598     0.0  


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 598 bits (1545),  Expect = 0.0, Method: Composition-based stats.
 Identities = 217/407 (53%), Positives = 274/407 (67%), Gaps = 7/407 (2%)

Query  2    LPATDRGNLMLKLADLVEQHRETLATIETWDNGKPYSVAFNDDLGEVINTIRYCAGWADK  61
             PA +R  ++ K ADL+E+ ++ LA +ET +NGKP + A   ++   I+ +RY AG A +
Sbjct  48   TPAAERAAILRKAADLLEERKDELAELETLENGKPLAEAR-GEVDRAIDVLRYYAGLARR  106

Query  62   VHGQTISTTSAKFAYTLRQPIGVVGQIIPWNFPLAMAAWKLGPALACGNTVVMKPAEQTP  121
            + G+T+ +   + AYT R+P+GVVG I PWNFPL + AWK+ PALA GNTVV+KP+E TP
Sbjct  107  LDGETLPSDPGRLAYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTP  166

Query  122  LSILYLATLIKEAGFPPGVVNILNGFGRVAGSALVNHPDVDKVAFTGSTATGREIMKMAA  181
            L+ L LA L +EAG P GV+N++ G G   G ALV HPDV KV+FTGSTA GR I + AA
Sbjct  167  LTALLLAELFEEAGLPAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAA  226

Query  182  GTMKNITLETGGKSPLLVFDDADLEQSAKWAHIGIMYNQGQVCTATSRILVHESVYDRFV  241
              +K +TLE GGK+PL+V +DADL+ + + A  G   N GQVCTATSR+LVHES+YD FV
Sbjct  227  QNLKRVTLELGGKNPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFV  286

Query  242  TLFKEAVATTSKVGDPFADDTFQGPQVTKAQYERVLSYIEAGKNEGATLVAGGEPYKNVK  301
                EA     KVGDP   DT  GP ++KAQ ERVL Y+E  K EGA L+ GGE      
Sbjct  287  EKLVEAAKKL-KVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEA----G  341

Query  302  DGKGFFIAPTIFTNVKDDMRIYREEVFGPFVVISSFKTEEEAITRANDTTYGLGAAVFTK  361
               G+F+ PT+  NV  DMRI +EE+FGP + +  FK EEEAI  ANDT YGL A VFT 
Sbjct  342  LDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTS  401

Query  362  DIERAHRVASEIEAGMVWINSSNDSDFR-VPFGGVKQSGIGRELGEA  407
            D+ERA RVA  +EAGMVWIN     D   +PFGG KQSG GRE G  
Sbjct  402  DLERALRVARRLEAGMVWINDYTTGDADGLPFGGFKQSGFGREGGPY  448



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00034993

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396449 pfam01878, EVE, EVE domain. This domain was formerly k...  197     1e-64


>CDD:396449 pfam01878, EVE, EVE domain.  This domain was formerly known as 
DUF55. Crystal structures have shown that this domain is part 
of the PUA superfamily. This domain has been named EVE and 
is thought to be RNA-binding.
Length=146

 Score = 197 bits (504),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 77/160 (48%), Positives = 99/160 (62%), Gaps = 14/160 (9%)

Query  115  SYWLMKAEPESRMEKGVDVKFSIDDLQAAEKPEPWDGVRNPVARNHIRAMKKGDYAFFYH  174
            +YWLMK+EP+          +SIDDL+       WDGVRN  ARN +RAMK GD  FFYH
Sbjct  1    AYWLMKSEPD---------VYSIDDLKR-GGTTGWDGVRNYQARNFLRAMKPGDLVFFYH  50

Query  175  SNCKVPGVVGMMEIVQEHTPDESAFDPAHPYYDPKSKRDNPKWEVVHVEFRRKFKKMVTL  234
            S CK P +VG+ E+V E  PD + FDP  PYYDPKS  +NP+W  V V+  +K K+ +TL
Sbjct  51   SGCKPPAIVGIAEVVSEAYPDPTQFDPKSPYYDPKSTPENPRWYRVDVKPVKKLKRPLTL  110

Query  235  NDLKAHATPGGPLEDLQVLKQTRLSVSSVTPAQWKFILGL  274
             +LKA       L  + +L+Q RLSV  VT  +W+ IL L
Sbjct  111  KELKAEPE----LAGMALLRQGRLSVMPVTEEEWELILEL  146



Lambda      K        H        a         alpha
   0.311    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00034994

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  490     1e-174


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 490 bits (1264),  Expect = 1e-174, Method: Composition-based stats.
 Identities = 183/323 (57%), Positives = 220/323 (68%), Gaps = 6/323 (2%)

Query  1    MAAWKLGPALACGNTVVMKPAEQTPLSILYLATLIKEAGFPPGVVNILNGFGRVAGSALV  60
            + AWK+ PALA GNTVV+KP+E TPL+ L LA L +EAG P GV+N++ G G   G ALV
Sbjct  142  LPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGAEVGEALV  201

Query  61   NHPDVDKVAFTGSTATGREIMKMAAGTMKNITLETGGKSPLLVFDDADLEQSAKWAHIGI  120
             HPDV KV+FTGSTA GR I + AA  +K +TLE GGK+PL+V +DADL+ + + A  G 
Sbjct  202  EHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIVLEDADLDAAVEAAVFGA  261

Query  121  MYNQGQVCTATSRILVHESVYDRFVTLFKEAVATTSKVGDPFADDTFQGPQVTKAQYERV  180
              N GQVCTATSR+LVHES+YD FV    EA     KVGDP   DT  GP ++KAQ ERV
Sbjct  262  FGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKL-KVGDPLDPDTDMGPLISKAQLERV  320

Query  181  LSYIEAGKNEGATLVAGGEPYKNVKDGKGFFIAPTIFTNVKDDMRIYREEVFGPFVVISS  240
            L Y+E  K EGA L+ GGE         G+F+ PT+  NV  DMRI +EE+FGP + +  
Sbjct  321  LKYVEDAKEEGAKLLTGGEA----GLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIR  376

Query  241  FKTEEEAITRANDTTYGLGAAVFTKDIERAHRVASEIEAGMVWINSSNDSDFR-VPFGGV  299
            FK EEEAI  ANDT YGL A VFT D+ERA RVA  +EAGMVWIN     D   +PFGG 
Sbjct  377  FKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFGGF  436

Query  300  KQSGIGRELGEAGLEAYTQIKAV  322
            KQSG GRE G  GLE YT++K V
Sbjct  437  KQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.317    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00034995

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  490     1e-174


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 490 bits (1264),  Expect = 1e-174, Method: Composition-based stats.
 Identities = 183/323 (57%), Positives = 220/323 (68%), Gaps = 6/323 (2%)

Query  1    MAAWKLGPALACGNTVVMKPAEQTPLSILYLATLIKEAGFPPGVVNILNGFGRVAGSALV  60
            + AWK+ PALA GNTVV+KP+E TPL+ L LA L +EAG P GV+N++ G G   G ALV
Sbjct  142  LPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGAEVGEALV  201

Query  61   NHPDVDKVAFTGSTATGREIMKMAAGTMKNITLETGGKSPLLVFDDADLEQSAKWAHIGI  120
             HPDV KV+FTGSTA GR I + AA  +K +TLE GGK+PL+V +DADL+ + + A  G 
Sbjct  202  EHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIVLEDADLDAAVEAAVFGA  261

Query  121  MYNQGQVCTATSRILVHESVYDRFVTLFKEAVATTSKVGDPFADDTFQGPQVTKAQYERV  180
              N GQVCTATSR+LVHES+YD FV    EA     KVGDP   DT  GP ++KAQ ERV
Sbjct  262  FGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKL-KVGDPLDPDTDMGPLISKAQLERV  320

Query  181  LSYIEAGKNEGATLVAGGEPYKNVKDGKGFFIAPTIFTNVKDDMRIYREEVFGPFVVISS  240
            L Y+E  K EGA L+ GGE         G+F+ PT+  NV  DMRI +EE+FGP + +  
Sbjct  321  LKYVEDAKEEGAKLLTGGEA----GLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIR  376

Query  241  FKTEEEAITRANDTTYGLGAAVFTKDIERAHRVASEIEAGMVWINSSNDSDFR-VPFGGV  299
            FK EEEAI  ANDT YGL A VFT D+ERA RVA  +EAGMVWIN     D   +PFGG 
Sbjct  377  FKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFGGF  436

Query  300  KQSGIGRELGEAGLEAYTQIKAV  322
            KQSG GRE G  GLE YT++K V
Sbjct  437  KQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.317    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00034996

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  490     1e-174


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 490 bits (1264),  Expect = 1e-174, Method: Composition-based stats.
 Identities = 183/323 (57%), Positives = 220/323 (68%), Gaps = 6/323 (2%)

Query  1    MAAWKLGPALACGNTVVMKPAEQTPLSILYLATLIKEAGFPPGVVNILNGFGRVAGSALV  60
            + AWK+ PALA GNTVV+KP+E TPL+ L LA L +EAG P GV+N++ G G   G ALV
Sbjct  142  LPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGAEVGEALV  201

Query  61   NHPDVDKVAFTGSTATGREIMKMAAGTMKNITLETGGKSPLLVFDDADLEQSAKWAHIGI  120
             HPDV KV+FTGSTA GR I + AA  +K +TLE GGK+PL+V +DADL+ + + A  G 
Sbjct  202  EHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIVLEDADLDAAVEAAVFGA  261

Query  121  MYNQGQVCTATSRILVHESVYDRFVTLFKEAVATTSKVGDPFADDTFQGPQVTKAQYERV  180
              N GQVCTATSR+LVHES+YD FV    EA     KVGDP   DT  GP ++KAQ ERV
Sbjct  262  FGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKL-KVGDPLDPDTDMGPLISKAQLERV  320

Query  181  LSYIEAGKNEGATLVAGGEPYKNVKDGKGFFIAPTIFTNVKDDMRIYREEVFGPFVVISS  240
            L Y+E  K EGA L+ GGE         G+F+ PT+  NV  DMRI +EE+FGP + +  
Sbjct  321  LKYVEDAKEEGAKLLTGGEA----GLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIR  376

Query  241  FKTEEEAITRANDTTYGLGAAVFTKDIERAHRVASEIEAGMVWINSSNDSDFR-VPFGGV  299
            FK EEEAI  ANDT YGL A VFT D+ERA RVA  +EAGMVWIN     D   +PFGG 
Sbjct  377  FKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFGGF  436

Query  300  KQSGIGRELGEAGLEAYTQIKAV  322
            KQSG GRE G  GLE YT++K V
Sbjct  437  KQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.317    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00034998

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  490     1e-174


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 490 bits (1264),  Expect = 1e-174, Method: Composition-based stats.
 Identities = 183/323 (57%), Positives = 220/323 (68%), Gaps = 6/323 (2%)

Query  1    MAAWKLGPALACGNTVVMKPAEQTPLSILYLATLIKEAGFPPGVVNILNGFGRVAGSALV  60
            + AWK+ PALA GNTVV+KP+E TPL+ L LA L +EAG P GV+N++ G G   G ALV
Sbjct  142  LPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGAEVGEALV  201

Query  61   NHPDVDKVAFTGSTATGREIMKMAAGTMKNITLETGGKSPLLVFDDADLEQSAKWAHIGI  120
             HPDV KV+FTGSTA GR I + AA  +K +TLE GGK+PL+V +DADL+ + + A  G 
Sbjct  202  EHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIVLEDADLDAAVEAAVFGA  261

Query  121  MYNQGQVCTATSRILVHESVYDRFVTLFKEAVATTSKVGDPFADDTFQGPQVTKAQYERV  180
              N GQVCTATSR+LVHES+YD FV    EA     KVGDP   DT  GP ++KAQ ERV
Sbjct  262  FGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKL-KVGDPLDPDTDMGPLISKAQLERV  320

Query  181  LSYIEAGKNEGATLVAGGEPYKNVKDGKGFFIAPTIFTNVKDDMRIYREEVFGPFVVISS  240
            L Y+E  K EGA L+ GGE         G+F+ PT+  NV  DMRI +EE+FGP + +  
Sbjct  321  LKYVEDAKEEGAKLLTGGEA----GLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIR  376

Query  241  FKTEEEAITRANDTTYGLGAAVFTKDIERAHRVASEIEAGMVWINSSNDSDFR-VPFGGV  299
            FK EEEAI  ANDT YGL A VFT D+ERA RVA  +EAGMVWIN     D   +PFGG 
Sbjct  377  FKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFGGF  436

Query  300  KQSGIGRELGEAGLEAYTQIKAV  322
            KQSG GRE G  GLE YT++K V
Sbjct  437  KQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.317    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00034997

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  490     1e-174


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 490 bits (1264),  Expect = 1e-174, Method: Composition-based stats.
 Identities = 183/323 (57%), Positives = 220/323 (68%), Gaps = 6/323 (2%)

Query  1    MAAWKLGPALACGNTVVMKPAEQTPLSILYLATLIKEAGFPPGVVNILNGFGRVAGSALV  60
            + AWK+ PALA GNTVV+KP+E TPL+ L LA L +EAG P GV+N++ G G   G ALV
Sbjct  142  LPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGAEVGEALV  201

Query  61   NHPDVDKVAFTGSTATGREIMKMAAGTMKNITLETGGKSPLLVFDDADLEQSAKWAHIGI  120
             HPDV KV+FTGSTA GR I + AA  +K +TLE GGK+PL+V +DADL+ + + A  G 
Sbjct  202  EHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIVLEDADLDAAVEAAVFGA  261

Query  121  MYNQGQVCTATSRILVHESVYDRFVTLFKEAVATTSKVGDPFADDTFQGPQVTKAQYERV  180
              N GQVCTATSR+LVHES+YD FV    EA     KVGDP   DT  GP ++KAQ ERV
Sbjct  262  FGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKL-KVGDPLDPDTDMGPLISKAQLERV  320

Query  181  LSYIEAGKNEGATLVAGGEPYKNVKDGKGFFIAPTIFTNVKDDMRIYREEVFGPFVVISS  240
            L Y+E  K EGA L+ GGE         G+F+ PT+  NV  DMRI +EE+FGP + +  
Sbjct  321  LKYVEDAKEEGAKLLTGGEA----GLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIR  376

Query  241  FKTEEEAITRANDTTYGLGAAVFTKDIERAHRVASEIEAGMVWINSSNDSDFR-VPFGGV  299
            FK EEEAI  ANDT YGL A VFT D+ERA RVA  +EAGMVWIN     D   +PFGG 
Sbjct  377  FKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFGGF  436

Query  300  KQSGIGRELGEAGLEAYTQIKAV  322
            KQSG GRE G  GLE YT++K V
Sbjct  437  KQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.317    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00030480

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  490     1e-174


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 490 bits (1264),  Expect = 1e-174, Method: Composition-based stats.
 Identities = 183/323 (57%), Positives = 220/323 (68%), Gaps = 6/323 (2%)

Query  1    MAAWKLGPALACGNTVVMKPAEQTPLSILYLATLIKEAGFPPGVVNILNGFGRVAGSALV  60
            + AWK+ PALA GNTVV+KP+E TPL+ L LA L +EAG P GV+N++ G G   G ALV
Sbjct  142  LPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGAEVGEALV  201

Query  61   NHPDVDKVAFTGSTATGREIMKMAAGTMKNITLETGGKSPLLVFDDADLEQSAKWAHIGI  120
             HPDV KV+FTGSTA GR I + AA  +K +TLE GGK+PL+V +DADL+ + + A  G 
Sbjct  202  EHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIVLEDADLDAAVEAAVFGA  261

Query  121  MYNQGQVCTATSRILVHESVYDRFVTLFKEAVATTSKVGDPFADDTFQGPQVTKAQYERV  180
              N GQVCTATSR+LVHES+YD FV    EA     KVGDP   DT  GP ++KAQ ERV
Sbjct  262  FGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKL-KVGDPLDPDTDMGPLISKAQLERV  320

Query  181  LSYIEAGKNEGATLVAGGEPYKNVKDGKGFFIAPTIFTNVKDDMRIYREEVFGPFVVISS  240
            L Y+E  K EGA L+ GGE         G+F+ PT+  NV  DMRI +EE+FGP + +  
Sbjct  321  LKYVEDAKEEGAKLLTGGEA----GLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIR  376

Query  241  FKTEEEAITRANDTTYGLGAAVFTKDIERAHRVASEIEAGMVWINSSNDSDFR-VPFGGV  299
            FK EEEAI  ANDT YGL A VFT D+ERA RVA  +EAGMVWIN     D   +PFGG 
Sbjct  377  FKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFGGF  436

Query  300  KQSGIGRELGEAGLEAYTQIKAV  322
            KQSG GRE G  GLE YT++K V
Sbjct  437  KQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.317    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00034999

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  490     1e-174


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 490 bits (1264),  Expect = 1e-174, Method: Composition-based stats.
 Identities = 183/323 (57%), Positives = 220/323 (68%), Gaps = 6/323 (2%)

Query  1    MAAWKLGPALACGNTVVMKPAEQTPLSILYLATLIKEAGFPPGVVNILNGFGRVAGSALV  60
            + AWK+ PALA GNTVV+KP+E TPL+ L LA L +EAG P GV+N++ G G   G ALV
Sbjct  142  LPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGAEVGEALV  201

Query  61   NHPDVDKVAFTGSTATGREIMKMAAGTMKNITLETGGKSPLLVFDDADLEQSAKWAHIGI  120
             HPDV KV+FTGSTA GR I + AA  +K +TLE GGK+PL+V +DADL+ + + A  G 
Sbjct  202  EHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIVLEDADLDAAVEAAVFGA  261

Query  121  MYNQGQVCTATSRILVHESVYDRFVTLFKEAVATTSKVGDPFADDTFQGPQVTKAQYERV  180
              N GQVCTATSR+LVHES+YD FV    EA     KVGDP   DT  GP ++KAQ ERV
Sbjct  262  FGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKL-KVGDPLDPDTDMGPLISKAQLERV  320

Query  181  LSYIEAGKNEGATLVAGGEPYKNVKDGKGFFIAPTIFTNVKDDMRIYREEVFGPFVVISS  240
            L Y+E  K EGA L+ GGE         G+F+ PT+  NV  DMRI +EE+FGP + +  
Sbjct  321  LKYVEDAKEEGAKLLTGGEA----GLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIR  376

Query  241  FKTEEEAITRANDTTYGLGAAVFTKDIERAHRVASEIEAGMVWINSSNDSDFR-VPFGGV  299
            FK EEEAI  ANDT YGL A VFT D+ERA RVA  +EAGMVWIN     D   +PFGG 
Sbjct  377  FKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFGGF  436

Query  300  KQSGIGRELGEAGLEAYTQIKAV  322
            KQSG GRE G  GLE YT++K V
Sbjct  437  KQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.317    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00030482

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396449 pfam01878, EVE, EVE domain. This domain was formerly k...  197     1e-64


>CDD:396449 pfam01878, EVE, EVE domain.  This domain was formerly known as 
DUF55. Crystal structures have shown that this domain is part 
of the PUA superfamily. This domain has been named EVE and 
is thought to be RNA-binding.
Length=146

 Score = 197 bits (504),  Expect = 1e-64, Method: Composition-based stats.
 Identities = 77/160 (48%), Positives = 99/160 (62%), Gaps = 14/160 (9%)

Query  115  SYWLMKAEPESRMEKGVDVKFSIDDLQAAEKPEPWDGVRNPVARNHIRAMKKGDYAFFYH  174
            +YWLMK+EP+          +SIDDL+       WDGVRN  ARN +RAMK GD  FFYH
Sbjct  1    AYWLMKSEPD---------VYSIDDLKR-GGTTGWDGVRNYQARNFLRAMKPGDLVFFYH  50

Query  175  SNCKVPGVVGMMEIVQEHTPDESAFDPAHPYYDPKSKRDNPKWEVVHVEFRRKFKKMVTL  234
            S CK P +VG+ E+V E  PD + FDP  PYYDPKS  +NP+W  V V+  +K K+ +TL
Sbjct  51   SGCKPPAIVGIAEVVSEAYPDPTQFDPKSPYYDPKSTPENPRWYRVDVKPVKKLKRPLTL  110

Query  235  NDLKAHATPGGPLEDLQVLKQTRLSVSSVTPAQWKFILGL  274
             +LKA       L  + +L+Q RLSV  VT  +W+ IL L
Sbjct  111  KELKAEPE----LAGMALLRQGRLSVMPVTEEEWELILEL  146



Lambda      K        H        a         alpha
   0.311    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00030483

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  490     1e-174


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 490 bits (1264),  Expect = 1e-174, Method: Composition-based stats.
 Identities = 183/323 (57%), Positives = 220/323 (68%), Gaps = 6/323 (2%)

Query  1    MAAWKLGPALACGNTVVMKPAEQTPLSILYLATLIKEAGFPPGVVNILNGFGRVAGSALV  60
            + AWK+ PALA GNTVV+KP+E TPL+ L LA L +EAG P GV+N++ G G   G ALV
Sbjct  142  LPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGAEVGEALV  201

Query  61   NHPDVDKVAFTGSTATGREIMKMAAGTMKNITLETGGKSPLLVFDDADLEQSAKWAHIGI  120
             HPDV KV+FTGSTA GR I + AA  +K +TLE GGK+PL+V +DADL+ + + A  G 
Sbjct  202  EHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIVLEDADLDAAVEAAVFGA  261

Query  121  MYNQGQVCTATSRILVHESVYDRFVTLFKEAVATTSKVGDPFADDTFQGPQVTKAQYERV  180
              N GQVCTATSR+LVHES+YD FV    EA     KVGDP   DT  GP ++KAQ ERV
Sbjct  262  FGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKL-KVGDPLDPDTDMGPLISKAQLERV  320

Query  181  LSYIEAGKNEGATLVAGGEPYKNVKDGKGFFIAPTIFTNVKDDMRIYREEVFGPFVVISS  240
            L Y+E  K EGA L+ GGE         G+F+ PT+  NV  DMRI +EE+FGP + +  
Sbjct  321  LKYVEDAKEEGAKLLTGGEA----GLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIR  376

Query  241  FKTEEEAITRANDTTYGLGAAVFTKDIERAHRVASEIEAGMVWINSSNDSDFR-VPFGGV  299
            FK EEEAI  ANDT YGL A VFT D+ERA RVA  +EAGMVWIN     D   +PFGG 
Sbjct  377  FKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFGGF  436

Query  300  KQSGIGRELGEAGLEAYTQIKAV  322
            KQSG GRE G  GLE YT++K V
Sbjct  437  KQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.317    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00030484

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  490     1e-174


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 490 bits (1264),  Expect = 1e-174, Method: Composition-based stats.
 Identities = 183/323 (57%), Positives = 220/323 (68%), Gaps = 6/323 (2%)

Query  1    MAAWKLGPALACGNTVVMKPAEQTPLSILYLATLIKEAGFPPGVVNILNGFGRVAGSALV  60
            + AWK+ PALA GNTVV+KP+E TPL+ L LA L +EAG P GV+N++ G G   G ALV
Sbjct  142  LPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGAEVGEALV  201

Query  61   NHPDVDKVAFTGSTATGREIMKMAAGTMKNITLETGGKSPLLVFDDADLEQSAKWAHIGI  120
             HPDV KV+FTGSTA GR I + AA  +K +TLE GGK+PL+V +DADL+ + + A  G 
Sbjct  202  EHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIVLEDADLDAAVEAAVFGA  261

Query  121  MYNQGQVCTATSRILVHESVYDRFVTLFKEAVATTSKVGDPFADDTFQGPQVTKAQYERV  180
              N GQVCTATSR+LVHES+YD FV    EA     KVGDP   DT  GP ++KAQ ERV
Sbjct  262  FGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKL-KVGDPLDPDTDMGPLISKAQLERV  320

Query  181  LSYIEAGKNEGATLVAGGEPYKNVKDGKGFFIAPTIFTNVKDDMRIYREEVFGPFVVISS  240
            L Y+E  K EGA L+ GGE         G+F+ PT+  NV  DMRI +EE+FGP + +  
Sbjct  321  LKYVEDAKEEGAKLLTGGEA----GLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIR  376

Query  241  FKTEEEAITRANDTTYGLGAAVFTKDIERAHRVASEIEAGMVWINSSNDSDFR-VPFGGV  299
            FK EEEAI  ANDT YGL A VFT D+ERA RVA  +EAGMVWIN     D   +PFGG 
Sbjct  377  FKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFGGF  436

Query  300  KQSGIGRELGEAGLEAYTQIKAV  322
            KQSG GRE G  GLE YT++K V
Sbjct  437  KQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.317    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00035000

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  490     1e-174


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 490 bits (1264),  Expect = 1e-174, Method: Composition-based stats.
 Identities = 183/323 (57%), Positives = 220/323 (68%), Gaps = 6/323 (2%)

Query  1    MAAWKLGPALACGNTVVMKPAEQTPLSILYLATLIKEAGFPPGVVNILNGFGRVAGSALV  60
            + AWK+ PALA GNTVV+KP+E TPL+ L LA L +EAG P GV+N++ G G   G ALV
Sbjct  142  LPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGAEVGEALV  201

Query  61   NHPDVDKVAFTGSTATGREIMKMAAGTMKNITLETGGKSPLLVFDDADLEQSAKWAHIGI  120
             HPDV KV+FTGSTA GR I + AA  +K +TLE GGK+PL+V +DADL+ + + A  G 
Sbjct  202  EHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIVLEDADLDAAVEAAVFGA  261

Query  121  MYNQGQVCTATSRILVHESVYDRFVTLFKEAVATTSKVGDPFADDTFQGPQVTKAQYERV  180
              N GQVCTATSR+LVHES+YD FV    EA     KVGDP   DT  GP ++KAQ ERV
Sbjct  262  FGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKL-KVGDPLDPDTDMGPLISKAQLERV  320

Query  181  LSYIEAGKNEGATLVAGGEPYKNVKDGKGFFIAPTIFTNVKDDMRIYREEVFGPFVVISS  240
            L Y+E  K EGA L+ GGE         G+F+ PT+  NV  DMRI +EE+FGP + +  
Sbjct  321  LKYVEDAKEEGAKLLTGGEA----GLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIR  376

Query  241  FKTEEEAITRANDTTYGLGAAVFTKDIERAHRVASEIEAGMVWINSSNDSDFR-VPFGGV  299
            FK EEEAI  ANDT YGL A VFT D+ERA RVA  +EAGMVWIN     D   +PFGG 
Sbjct  377  FKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFGGF  436

Query  300  KQSGIGRELGEAGLEAYTQIKAV  322
            KQSG GRE G  GLE YT++K V
Sbjct  437  KQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.317    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00035001

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  490     1e-174


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 490 bits (1264),  Expect = 1e-174, Method: Composition-based stats.
 Identities = 183/323 (57%), Positives = 220/323 (68%), Gaps = 6/323 (2%)

Query  1    MAAWKLGPALACGNTVVMKPAEQTPLSILYLATLIKEAGFPPGVVNILNGFGRVAGSALV  60
            + AWK+ PALA GNTVV+KP+E TPL+ L LA L +EAG P GV+N++ G G   G ALV
Sbjct  142  LPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGAEVGEALV  201

Query  61   NHPDVDKVAFTGSTATGREIMKMAAGTMKNITLETGGKSPLLVFDDADLEQSAKWAHIGI  120
             HPDV KV+FTGSTA GR I + AA  +K +TLE GGK+PL+V +DADL+ + + A  G 
Sbjct  202  EHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIVLEDADLDAAVEAAVFGA  261

Query  121  MYNQGQVCTATSRILVHESVYDRFVTLFKEAVATTSKVGDPFADDTFQGPQVTKAQYERV  180
              N GQVCTATSR+LVHES+YD FV    EA     KVGDP   DT  GP ++KAQ ERV
Sbjct  262  FGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKL-KVGDPLDPDTDMGPLISKAQLERV  320

Query  181  LSYIEAGKNEGATLVAGGEPYKNVKDGKGFFIAPTIFTNVKDDMRIYREEVFGPFVVISS  240
            L Y+E  K EGA L+ GGE         G+F+ PT+  NV  DMRI +EE+FGP + +  
Sbjct  321  LKYVEDAKEEGAKLLTGGEA----GLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIR  376

Query  241  FKTEEEAITRANDTTYGLGAAVFTKDIERAHRVASEIEAGMVWINSSNDSDFR-VPFGGV  299
            FK EEEAI  ANDT YGL A VFT D+ERA RVA  +EAGMVWIN     D   +PFGG 
Sbjct  377  FKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFGGF  436

Query  300  KQSGIGRELGEAGLEAYTQIKAV  322
            KQSG GRE G  GLE YT++K V
Sbjct  437  KQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.317    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00030485

Length=626
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  676     0.0  


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 676 bits (1748),  Expect = 0.0, Method: Composition-based stats.
 Identities = 245/468 (52%), Positives = 311/468 (66%), Gaps = 10/468 (2%)

Query  152  FVPSKSGEKFATINPSDESEIASVYAAGEEDIDIAVKAARKALKDPSWKMLPATDRGNLM  211
            +V S   E    INP+    IA+V AA  ED+D A+ AAR A   P+W+  PA +R  ++
Sbjct  1    WVDS-ESETIEVINPATGEVIATVPAATAEDVDAAIAAARAAF--PAWRKTPAAERAAIL  57

Query  212  LKLADLVEQHRETLATIETWDNGKPYSVAFNDDLGEVINTIRYCAGWADKVHGQTISTTS  271
             K ADL+E+ ++ LA +ET +NGKP + A   ++   I+ +RY AG A ++ G+T+ +  
Sbjct  58   RKAADLLEERKDELAELETLENGKPLAEAR-GEVDRAIDVLRYYAGLARRLDGETLPSDP  116

Query  272  AKFAYTLRQPIGVVGQIIPWNFPLAMAAWKLGPALACGNTVVMKPAEQTPLSILYLATLI  331
             + AYT R+P+GVVG I PWNFPL + AWK+ PALA GNTVV+KP+E TPL+ L LA L 
Sbjct  117  GRLAYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELF  176

Query  332  KEAGFPPGVVNILNGFGRVAGSALVNHPDVDKVAFTGSTATGREIMKMAAGTMKNITLET  391
            +EAG P GV+N++ G G   G ALV HPDV KV+FTGSTA GR I + AA  +K +TLE 
Sbjct  177  EEAGLPAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLEL  236

Query  392  GGKSPLLVFDDADLEQSAKWAHIGIMYNQGQVCTATSRILVHESVYDRFVTLFKEAVATT  451
            GGK+PL+V +DADL+ + + A  G   N GQVCTATSR+LVHES+YD FV    EA    
Sbjct  237  GGKNPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKL  296

Query  452  SKVGDPFADDTFQGPQVTKAQYERVLSYIEAGKNEGATLVAGGEPYKNVKDGKGFFIAPT  511
             KVGDP   DT  GP ++KAQ ERVL Y+E  K EGA L+ GGE         G+F+ PT
Sbjct  297  -KVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEA----GLDNGYFVEPT  351

Query  512  IFTNVKDDMRIYREEVFGPFVVISSFKTEEEAITRANDTTYGLGAAVFTKDIERAHRVAS  571
            +  NV  DMRI +EE+FGP + +  FK EEEAI  ANDT YGL A VFT D+ERA RVA 
Sbjct  352  VLANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVAR  411

Query  572  EIEAGMVWINSSNDSDFR-VPFGGVKQSGIGRELGEAGLEAYTQIKAV  618
             +EAGMVWIN     D   +PFGG KQSG GRE G  GLE YT++K V
Sbjct  412  RLEAGMVWINDYTTGDADGLPFGGFKQSGFGREGGPYGLEEYTEVKTV  459



Lambda      K        H        a         alpha
   0.319    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 786063070


Query= TCONS_00030486

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region...  268     3e-91


>CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region.  This 
family describes a region that is found in proteins expressed 
by a variety of eukaryotic and prokaryotic species. These 
proteins include various enzymes, such as senescence marker 
protein 30 (SMP-30), gluconolactonase and luciferin-regenerating 
enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl 
phosphorofluoridate in the liver, and has been noted as having 
sequence similarity, in the region described in this family, 
with PON1 and LRE.
Length=246

 Score = 268 bits (688),  Expect = 3e-91, Method: Composition-based stats.
 Identities = 105/257 (41%), Positives = 146/257 (57%), Gaps = 18/257 (7%)

Query  22   EGPFHDEARNEFRFVDIWDQKLYILDLAKGPDSLKVIDTASPLGVTANIANGGDDHKDLI  81
            EGP  DE      +VDI   +++ LD A G ++  V DT  P+G  A   +GG      +
Sbjct  3    EGPVWDEEEGALYWVDILGGRIHRLDPATGKET--VWDTPGPVGAIAPRDDGG------L  54

Query  82   VVAAKHGYALADRNTGQLSYIRKVWDEQEDPEKARRMRFNDGAVDSHGRFWAGSMNDPKV  141
            +VA K G AL D  TG+L+ +        + +     RFNDG VD  GRFW G+M D + 
Sbjct  55   IVALKDGVALLDLATGELTPLADP-----EDDDWPLNRFNDGKVDPDGRFWFGTMGDDEA  109

Query  142  QKPTNEGVLFRLDPDLQLHRMVEGVSIPNGIGWNLRDDTMYFTDSPTAKIFAFDFDASTG  201
                + G L+RLDPD +L R+++G++I NG+ W+    T+YF DSP  KI+A+D+D   G
Sbjct  110  -PGGDPGALYRLDPDGKLTRVLDGLTISNGLAWSPDGRTLYFADSPARKIWAYDYDLDGG  168

Query  202  TISNRRVHYDVG-EPMEPDGFAIDEEGCIWSAIYGGGKIIRISPEGKLIGEISFPTRNIT  260
             ISNRRV  D       PDG A+D EG +W A +GGGK++R  P+GKL+ EI  P +  T
Sbjct  169  LISNRRVFADFKPGLGRPDGMAVDAEGNVWVARWGGGKVVRFDPDGKLLREIELPAKRPT  228

Query  261  CPTFVG---TELFVTTA  274
               F G     L+VT+A
Sbjct  229  SCAFGGPDLRTLYVTSA  245



Lambda      K        H        a         alpha
   0.319    0.139    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00035005

Length=119
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region...  58.8    4e-12


>CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region.  This 
family describes a region that is found in proteins expressed 
by a variety of eukaryotic and prokaryotic species. These 
proteins include various enzymes, such as senescence marker 
protein 30 (SMP-30), gluconolactonase and luciferin-regenerating 
enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl 
phosphorofluoridate in the liver, and has been noted as having 
sequence similarity, in the region described in this family, 
with PON1 and LRE.
Length=246

 Score = 58.8 bits (143),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 8/81 (10%)

Query  22   EGPFHDEARNEFRFVDIWDQKLYILDLAKGPDSLKVIDTASPLGVTANIANGGDDHKDLI  81
            EGP  DE      +VDI   +++ LD A G ++  V DT  P+G  A   +GG      +
Sbjct  3    EGPVWDEEEGALYWVDILGGRIHRLDPATGKET--VWDTPGPVGAIAPRDDGG------L  54

Query  82   VVAAKHGYALADRNTGQLSYI  102
            +VA K G AL D  TG+L+ +
Sbjct  55   IVALKDGVALLDLATGELTPL  75



Lambda      K        H        a         alpha
   0.318    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00035004

Length=119
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region...  58.8    4e-12


>CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region.  This 
family describes a region that is found in proteins expressed 
by a variety of eukaryotic and prokaryotic species. These 
proteins include various enzymes, such as senescence marker 
protein 30 (SMP-30), gluconolactonase and luciferin-regenerating 
enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl 
phosphorofluoridate in the liver, and has been noted as having 
sequence similarity, in the region described in this family, 
with PON1 and LRE.
Length=246

 Score = 58.8 bits (143),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 8/81 (10%)

Query  22   EGPFHDEARNEFRFVDIWDQKLYILDLAKGPDSLKVIDTASPLGVTANIANGGDDHKDLI  81
            EGP  DE      +VDI   +++ LD A G ++  V DT  P+G  A   +GG      +
Sbjct  3    EGPVWDEEEGALYWVDILGGRIHRLDPATGKET--VWDTPGPVGAIAPRDDGG------L  54

Query  82   VVAAKHGYALADRNTGQLSYI  102
            +VA K G AL D  TG+L+ +
Sbjct  55   IVALKDGVALLDLATGELTPL  75



Lambda      K        H        a         alpha
   0.318    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00030488

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region...  268     4e-91


>CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region.  This 
family describes a region that is found in proteins expressed 
by a variety of eukaryotic and prokaryotic species. These 
proteins include various enzymes, such as senescence marker 
protein 30 (SMP-30), gluconolactonase and luciferin-regenerating 
enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl 
phosphorofluoridate in the liver, and has been noted as having 
sequence similarity, in the region described in this family, 
with PON1 and LRE.
Length=246

 Score = 268 bits (688),  Expect = 4e-91, Method: Composition-based stats.
 Identities = 105/257 (41%), Positives = 146/257 (57%), Gaps = 18/257 (7%)

Query  22   EGPFHDEARNEFRFVDIWDQKLYILDLAKGPDSLKVIDTASPLGVTANIANGGDDHKDLI  81
            EGP  DE      +VDI   +++ LD A G ++  V DT  P+G  A   +GG      +
Sbjct  3    EGPVWDEEEGALYWVDILGGRIHRLDPATGKET--VWDTPGPVGAIAPRDDGG------L  54

Query  82   VVAAKHGYALADRNTGQLSYIRKVWDEQEDPEKARRMRFNDGAVDSHGRFWAGSMNDPKV  141
            +VA K G AL D  TG+L+ +        + +     RFNDG VD  GRFW G+M D + 
Sbjct  55   IVALKDGVALLDLATGELTPLADP-----EDDDWPLNRFNDGKVDPDGRFWFGTMGDDEA  109

Query  142  QKPTNEGVLFRLDPDLQLHRMVEGVSIPNGIGWNLRDDTMYFTDSPTAKIFAFDFDASTG  201
                + G L+RLDPD +L R+++G++I NG+ W+    T+YF DSP  KI+A+D+D   G
Sbjct  110  -PGGDPGALYRLDPDGKLTRVLDGLTISNGLAWSPDGRTLYFADSPARKIWAYDYDLDGG  168

Query  202  TISNRRVHYDVG-EPMEPDGFAIDEEGCIWSAIYGGGKIIRISPEGKLIGEISFPTRNIT  260
             ISNRRV  D       PDG A+D EG +W A +GGGK++R  P+GKL+ EI  P +  T
Sbjct  169  LISNRRVFADFKPGLGRPDGMAVDAEGNVWVARWGGGKVVRFDPDGKLLREIELPAKRPT  228

Query  261  CPTFVG---TELFVTTA  274
               F G     L+VT+A
Sbjct  229  SCAFGGPDLRTLYVTSA  245



Lambda      K        H        a         alpha
   0.319    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00030487

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region...  268     4e-91


>CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region.  This 
family describes a region that is found in proteins expressed 
by a variety of eukaryotic and prokaryotic species. These 
proteins include various enzymes, such as senescence marker 
protein 30 (SMP-30), gluconolactonase and luciferin-regenerating 
enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl 
phosphorofluoridate in the liver, and has been noted as having 
sequence similarity, in the region described in this family, 
with PON1 and LRE.
Length=246

 Score = 268 bits (688),  Expect = 4e-91, Method: Composition-based stats.
 Identities = 105/257 (41%), Positives = 146/257 (57%), Gaps = 18/257 (7%)

Query  22   EGPFHDEARNEFRFVDIWDQKLYILDLAKGPDSLKVIDTASPLGVTANIANGGDDHKDLI  81
            EGP  DE      +VDI   +++ LD A G ++  V DT  P+G  A   +GG      +
Sbjct  3    EGPVWDEEEGALYWVDILGGRIHRLDPATGKET--VWDTPGPVGAIAPRDDGG------L  54

Query  82   VVAAKHGYALADRNTGQLSYIRKVWDEQEDPEKARRMRFNDGAVDSHGRFWAGSMNDPKV  141
            +VA K G AL D  TG+L+ +        + +     RFNDG VD  GRFW G+M D + 
Sbjct  55   IVALKDGVALLDLATGELTPLADP-----EDDDWPLNRFNDGKVDPDGRFWFGTMGDDEA  109

Query  142  QKPTNEGVLFRLDPDLQLHRMVEGVSIPNGIGWNLRDDTMYFTDSPTAKIFAFDFDASTG  201
                + G L+RLDPD +L R+++G++I NG+ W+    T+YF DSP  KI+A+D+D   G
Sbjct  110  -PGGDPGALYRLDPDGKLTRVLDGLTISNGLAWSPDGRTLYFADSPARKIWAYDYDLDGG  168

Query  202  TISNRRVHYDVG-EPMEPDGFAIDEEGCIWSAIYGGGKIIRISPEGKLIGEISFPTRNIT  260
             ISNRRV  D       PDG A+D EG +W A +GGGK++R  P+GKL+ EI  P +  T
Sbjct  169  LISNRRVFADFKPGLGRPDGMAVDAEGNVWVARWGGGKVVRFDPDGKLLREIELPAKRPT  228

Query  261  CPTFVG---TELFVTTA  274
               F G     L+VT+A
Sbjct  229  SCAFGGPDLRTLYVTSA  245



Lambda      K        H        a         alpha
   0.319    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 319226688


Query= TCONS_00030489

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region...  219     2e-73


>CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region.  This 
family describes a region that is found in proteins expressed 
by a variety of eukaryotic and prokaryotic species. These 
proteins include various enzymes, such as senescence marker 
protein 30 (SMP-30), gluconolactonase and luciferin-regenerating 
enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl 
phosphorofluoridate in the liver, and has been noted as having 
sequence similarity, in the region described in this family, 
with PON1 and LRE.
Length=246

 Score = 219 bits (561),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 75/161 (47%), Positives = 101/161 (63%), Gaps = 5/161 (3%)

Query  1    MRFNDGAVDSHGRFWAGSMNDPKVQKPTNEGVLFRLDPDLQLHRMVEGVSIPNGIGWNLR  60
             RFNDG VD  GRFW G+M D +     + G L+RLDPD +L R+++G++I NG+ W+  
Sbjct  86   NRFNDGKVDPDGRFWFGTMGDDEA-PGGDPGALYRLDPDGKLTRVLDGLTISNGLAWSPD  144

Query  61   DDTMYFTDSPTAKIFAFDFDASTGTISNRRVHYDVG-EPMEPDGFAIDEEGCIWSAIYGG  119
              T+YF DSP  KI+A+D+D   G ISNRRV  D       PDG A+D EG +W A +GG
Sbjct  145  GRTLYFADSPARKIWAYDYDLDGGLISNRRVFADFKPGLGRPDGMAVDAEGNVWVARWGG  204

Query  120  GKIIRISPEGKLIGEISFPTRNITCPTFVG---TELFVTTA  157
            GK++R  P+GKL+ EI  P +  T   F G     L+VT+A
Sbjct  205  GKVVRFDPDGKLLREIELPAKRPTSCAFGGPDLRTLYVTSA  245



Lambda      K        H        a         alpha
   0.320    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00035006

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region...  95.8    1e-25


>CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region.  This 
family describes a region that is found in proteins expressed 
by a variety of eukaryotic and prokaryotic species. These 
proteins include various enzymes, such as senescence marker 
protein 30 (SMP-30), gluconolactonase and luciferin-regenerating 
enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl 
phosphorofluoridate in the liver, and has been noted as having 
sequence similarity, in the region described in this family, 
with PON1 and LRE.
Length=246

 Score = 95.8 bits (239),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 44/123 (36%), Positives = 61/123 (50%), Gaps = 13/123 (11%)

Query  22   EGPFHDEARNEFRFVDIWDQKLYILDLAKGPDSLKVIDTASPLGVTANIANGGDDHKDLI  81
            EGP  DE      +VDI   +++ LD A G ++  V DT  P+G  A   +GG      +
Sbjct  3    EGPVWDEEEGALYWVDILGGRIHRLDPATGKET--VWDTPGPVGAIAPRDDGG------L  54

Query  82   VVAAKHGYALADRNTGQLSYIRKVWDEQEDPEKARRMRFNDGAVDSHGRFWAGSMNDPKV  141
            +VA K G AL D  TG+L+ +        + +     RFNDG VD  GRFW G+M D + 
Sbjct  55   IVALKDGVALLDLATGELTPLADP-----EDDDWPLNRFNDGKVDPDGRFWFGTMGDDEA  109

Query  142  QKP  144
               
Sbjct  110  PGG  112



Lambda      K        H        a         alpha
   0.317    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00030490

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region...  241     2e-80


>CDD:462480 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region.  This 
family describes a region that is found in proteins expressed 
by a variety of eukaryotic and prokaryotic species. These 
proteins include various enzymes, such as senescence marker 
protein 30 (SMP-30), gluconolactonase and luciferin-regenerating 
enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl 
phosphorofluoridate in the liver, and has been noted as having 
sequence similarity, in the region described in this family, 
with PON1 and LRE.
Length=246

 Score = 241 bits (616),  Expect = 2e-80, Method: Composition-based stats.
 Identities = 85/200 (43%), Positives = 118/200 (59%), Gaps = 10/200 (5%)

Query  48   DLIVVAAKHGYALADRNTGQLSYIRKVWDEQEDPEKARRMRFNDGAVDSHGRFWAGSMND  107
              ++VA K G AL D  TG+L+ +        + +     RFNDG VD  GRFW G+M D
Sbjct  52   GGLIVALKDGVALLDLATGELTPLADP-----EDDDWPLNRFNDGKVDPDGRFWFGTMGD  106

Query  108  PKVQKPTNEGVLFRLDPDLQLHRMVEGVSIPNGIGWNLRDDTMYFTDSPTAKIFAFDFDA  167
             +     + G L+RLDPD +L R+++G++I NG+ W+    T+YF DSP  KI+A+D+D 
Sbjct  107  DEA-PGGDPGALYRLDPDGKLTRVLDGLTISNGLAWSPDGRTLYFADSPARKIWAYDYDL  165

Query  168  STGTISNRRVHYDVG-EPMEPDGFAIDEEGCIWSAIYGGGKIIRISPEGKLIGEISFPTR  226
              G ISNRRV  D       PDG A+D EG +W A +GGGK++R  P+GKL+ EI  P +
Sbjct  166  DGGLISNRRVFADFKPGLGRPDGMAVDAEGNVWVARWGGGKVVRFDPDGKLLREIELPAK  225

Query  227  NITCPTFVG---TELFVTTA  243
              T   F G     L+VT+A
Sbjct  226  RPTSCAFGGPDLRTLYVTSA  245



Lambda      K        H        a         alpha
   0.319    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00030491

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.153    0.562    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00030492

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00035009

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00035010

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00030493

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00030494

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.124    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00030495

Length=492


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 607140466


Query= TCONS_00030496

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395259 pfam00328, His_Phos_2, Histidine phosphatase superfami...  124     3e-36


>CDD:395259 pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 
2).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches.The smaller 
branch 2 contains predominantly eukaryotic proteins. The 
catalytic functions in members include phytase, glucose-1-phosphatase 
and multiple inositol polyphosphate phosphatase. 
The in vivo roles of the mammalian acid phosphatases in branch 
2 are not fully understood, although activity against lysophosphatidic 
acid and tyrosine-phosphorylated proteins has 
been demonstrated.
Length=356

 Score = 124 bits (314),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 48/123 (39%), Positives = 63/123 (51%), Gaps = 16/123 (13%)

Query  1    MDMCSFDTVARTSDASQLSPFCQLFTHNEWKKYNYLQSLGKYYGY-GAGNPLGPAQGIGF  59
            + +C F+T         LSPFC LFT  +     YL  L +YYG  G GN L    G   
Sbjct  208  LFLCFFETNKA-----DLSPFCDLFTEEDALHNEYLLDLEEYYGLAGIGNELKKTIGGPL  262

Query  60   TNELIARLTRSPVQDHTSTNSTLVSNPATFPLNATMYVDFSHDNSMVSIFFALGLYNGTE  119
             NEL+ARLT   V              ATFPL+A +Y+ F+HD ++ S+  ALGL++   
Sbjct  263  LNELLARLTNDLVCTQE----------ATFPLDAKLYLYFTHDTTIYSLLSALGLFDDLP  312

Query  120  PLS  122
            PLS
Sbjct  313  PLS  315



Lambda      K        H        a         alpha
   0.318    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00030497

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395259 pfam00328, His_Phos_2, Histidine phosphatase superfami...  115     5e-32


>CDD:395259 pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 
2).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches.The smaller 
branch 2 contains predominantly eukaryotic proteins. The 
catalytic functions in members include phytase, glucose-1-phosphatase 
and multiple inositol polyphosphate phosphatase. 
The in vivo roles of the mammalian acid phosphatases in branch 
2 are not fully understood, although activity against lysophosphatidic 
acid and tyrosine-phosphorylated proteins has 
been demonstrated.
Length=356

 Score = 115 bits (289),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 56/159 (35%), Positives = 73/159 (46%), Gaps = 45/159 (28%)

Query  1    MDMCSFDTVARTSDASQLSPFCQLFTHNEWKKYNYLQSL--------------------V  40
            + +C F+T         LSPFC LFT  +     YL  L                    +
Sbjct  208  LFLCFFETNKA-----DLSPFCDLFTEEDALHNEYLLDLEEYYGLAGIGNELKKTIGGPL  262

Query  41   SNP--------------ATFPLNATMYVDFSHDNSMVSIFFALGLYNGTEPLSRTSVESA  86
             N               ATFPL+A +Y+ F+HD ++ S+  ALGL++   PLS   V   
Sbjct  263  LNELLARLTNDLVCTQEATFPLDAKLYLYFTHDTTIYSLLSALGLFDDLPPLSSLRV---  319

Query  87   KELDGYSASWVVPFGARAYFETMQCKSEK-EPLVRALIN  124
              LDGYSAS  VP+GAR  FE  +C SEK    VR L+N
Sbjct  320  --LDGYSASGEVPYGARLVFELYECSSEKDSRYVRLLLN  356



Lambda      K        H        a         alpha
   0.320    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0700    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00030501

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395259 pfam00328, His_Phos_2, Histidine phosphatase superfami...  166     7e-51


>CDD:395259 pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 
2).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches.The smaller 
branch 2 contains predominantly eukaryotic proteins. The 
catalytic functions in members include phytase, glucose-1-phosphatase 
and multiple inositol polyphosphate phosphatase. 
The in vivo roles of the mammalian acid phosphatases in branch 
2 are not fully understood, although activity against lysophosphatidic 
acid and tyrosine-phosphorylated proteins has 
been demonstrated.
Length=356

 Score = 166 bits (422),  Expect = 7e-51, Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 89/169 (53%), Gaps = 22/169 (13%)

Query  1    MDMCSFDTVARTSDASQLSPFCQLFTHNEWKKYNYLQSLGKYYGY-GAGNPLGPAQGIGF  59
            + +C F+T         LSPFC LFT  +     YL  L +YYG  G GN L    G   
Sbjct  208  LFLCFFETNKA-----DLSPFCDLFTEEDALHNEYLLDLEEYYGLAGIGNELKKTIGGPL  262

Query  60   TNELIARLTRSPVQDHTSTNSTLVSNPATFPLNATMYVDFSHDNSMVSIFFALGLYNGTE  119
             NEL+ARLT   V              ATFPL+A +Y+ F+HD ++ S+  ALGL++   
Sbjct  263  LNELLARLTNDLVCTQE----------ATFPLDAKLYLYFTHDTTIYSLLSALGLFDDLP  312

Query  120  PLSRTSVESAKELDGYSASWVVPFGARAYFETMQCKSEK-EPLVRALIN  167
            PLS   V     LDGYSAS  VP+GAR  FE  +C SEK    VR L+N
Sbjct  313  PLSSLRV-----LDGYSASGEVPYGARLVFELYECSSEKDSRYVRLLLN  356



Lambda      K        H        a         alpha
   0.319    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00030499

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395259 pfam00328, His_Phos_2, Histidine phosphatase superfami...  327     2e-109


>CDD:395259 pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 
2).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches.The smaller 
branch 2 contains predominantly eukaryotic proteins. The 
catalytic functions in members include phytase, glucose-1-phosphatase 
and multiple inositol polyphosphate phosphatase. 
The in vivo roles of the mammalian acid phosphatases in branch 
2 are not fully understood, although activity against lysophosphatidic 
acid and tyrosine-phosphorylated proteins has 
been demonstrated.
Length=356

 Score = 327 bits (839),  Expect = 2e-109, Method: Composition-based stats.
 Identities = 142/376 (38%), Positives = 179/376 (48%), Gaps = 41/376 (11%)

Query  104  RITLVQVLSRHGARYPTSSKSKKYKKLVTAIQANATDFKGKFAFLKTY-----NYTLGAD  158
             +  VQV+SRHG R PT    K Y+ L+  I + A   +GK +F   Y      YTLG  
Sbjct  1    ELEQVQVVSRHGDRTPTQKFKKSYESLIFKILSLAGSLEGKLSFPGDYRYFKLQYTLGWG  60

Query  159  DLTPFGEQQLVNSGIKFYQRYKA-LARSV----VPFIRASGSDRVIASGEKFIEGFQQAK  213
             LTP G  Q  N G  F QRY   L R        +IRAS   RVIAS + F EG    +
Sbjct  61   GLTPSGRVQAENLGRYFRQRYVGGLLRDGYNAKDIYIRASSEGRVIASAQAFAEGLFGPE  120

Query  214  LAD-PGATNRAAPAISVIIPESE---TFNNTLDHGVCTKFEA----SQLGDEVAANFTAL  265
              D        +    V I E +     N T  +  C  FE      +  DE    +  +
Sbjct  121  GEDVDKDLLDDSNVAKVTIDEDKKALANNLTAGYCSCPAFEWPLQLLKQVDEALDYYLPV  180

Query  266  FAPDIRARAEKHLPGVT-LTDEDVVSLMDMCSFDTVARTSDASQLSPFCQLFTHNEWKKY  324
            F   I  R E+  PG T LT +DV +L+ +C F+T         LSPFC LFT  +    
Sbjct  181  FLEPIAKRLEQLCPGETNLTADDVWALLFLCFFETNKA-----DLSPFCDLFTEEDALHN  235

Query  325  NYLQSLGKYYGY-GAGNPLGPAQGIGFTNELIARLTRSPVQDHTSTNSTLVSNPATFPLN  383
             YL  L +YYG  G GN L    G    NEL+ARLT   V              ATFPL+
Sbjct  236  EYLLDLEEYYGLAGIGNELKKTIGGPLLNELLARLTNDLVCTQE----------ATFPLD  285

Query  384  ATMYVDFSHDNSMVSIFFALGLYNGTEPLSRTSVESAKELDGYSASWVVPFGARAYFETM  443
            A +Y+ F+HD ++ S+  ALGL++   PLS   V     LDGYSAS  VP+GAR  FE  
Sbjct  286  AKLYLYFTHDTTIYSLLSALGLFDDLPPLSSLRV-----LDGYSASGEVPYGARLVFELY  340

Query  444  QCKSEK-EPLVRALIN  458
            +C SEK    VR L+N
Sbjct  341  ECSSEKDSRYVRLLLN  356



Lambda      K        H        a         alpha
   0.318    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00030498

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395259 pfam00328, His_Phos_2, Histidine phosphatase superfami...  327     9e-110


>CDD:395259 pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 
2).  The histidine phosphatase superfamily is so named because 
catalysis centers on a conserved His residue that is 
transiently phosphorylated during the catalytic cycle. Other 
conserved residues contribute to a 'phosphate pocket' and interact 
with the phospho group of substrate before, during and 
after its transfer to the His residue. Structure and sequence 
analyses show that different families contribute different 
additional residues to the 'phosphate pocket' and, more 
surprisingly, differ in the position, in sequence and in three 
dimensions, of a catalytically essential acidic residue. 
The superfamily may be divided into two main branches.The smaller 
branch 2 contains predominantly eukaryotic proteins. The 
catalytic functions in members include phytase, glucose-1-phosphatase 
and multiple inositol polyphosphate phosphatase. 
The in vivo roles of the mammalian acid phosphatases in branch 
2 are not fully understood, although activity against lysophosphatidic 
acid and tyrosine-phosphorylated proteins has 
been demonstrated.
Length=356

 Score = 327 bits (839),  Expect = 9e-110, Method: Composition-based stats.
 Identities = 142/376 (38%), Positives = 179/376 (48%), Gaps = 41/376 (11%)

Query  70   RITLVQVLSRHGARYPTSSKSKKYKKLVTAIQANATDFKGKFAFLKTY-----NYTLGAD  124
             +  VQV+SRHG R PT    K Y+ L+  I + A   +GK +F   Y      YTLG  
Sbjct  1    ELEQVQVVSRHGDRTPTQKFKKSYESLIFKILSLAGSLEGKLSFPGDYRYFKLQYTLGWG  60

Query  125  DLTPFGEQQLVNSGIKFYQRYKA-LARSV----VPFIRASGSDRVIASGEKFIEGFQQAK  179
             LTP G  Q  N G  F QRY   L R        +IRAS   RVIAS + F EG    +
Sbjct  61   GLTPSGRVQAENLGRYFRQRYVGGLLRDGYNAKDIYIRASSEGRVIASAQAFAEGLFGPE  120

Query  180  LAD-PGATNRAAPAISVIIPESE---TFNNTLDHGVCTKFEA----SQLGDEVAANFTAL  231
              D        +    V I E +     N T  +  C  FE      +  DE    +  +
Sbjct  121  GEDVDKDLLDDSNVAKVTIDEDKKALANNLTAGYCSCPAFEWPLQLLKQVDEALDYYLPV  180

Query  232  FAPDIRARAEKHLPGVT-LTDEDVVSLMDMCSFDTVARTSDASQLSPFCQLFTHNEWKKY  290
            F   I  R E+  PG T LT +DV +L+ +C F+T         LSPFC LFT  +    
Sbjct  181  FLEPIAKRLEQLCPGETNLTADDVWALLFLCFFETNKA-----DLSPFCDLFTEEDALHN  235

Query  291  NYLQSLGKYYGY-GAGNPLGPAQGIGFTNELIARLTRSPVQDHTSTNSTLVSNPATFPLN  349
             YL  L +YYG  G GN L    G    NEL+ARLT   V              ATFPL+
Sbjct  236  EYLLDLEEYYGLAGIGNELKKTIGGPLLNELLARLTNDLVCTQE----------ATFPLD  285

Query  350  ATMYVDFSHDNSMVSIFFALGLYNGTEPLSRTSVESAKELDGYSASWVVPFGARAYFETM  409
            A +Y+ F+HD ++ S+  ALGL++   PLS   V     LDGYSAS  VP+GAR  FE  
Sbjct  286  AKLYLYFTHDTTIYSLLSALGLFDDLPPLSSLRV-----LDGYSASGEVPYGARLVFELY  340

Query  410  QCKSEK-EPLVRALIN  424
            +C SEK    VR L+N
Sbjct  341  ECSSEKDSRYVRLLLN  356



Lambda      K        H        a         alpha
   0.318    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 573605296


Query= TCONS_00030500

Length=249


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00035011

Length=827


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.121    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050796248


Query= TCONS_00030503

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00030502

Length=289
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461749 pfam05817, Ribophorin_II, Oligosaccharyltransferase su...  83.9    1e-18


>CDD:461749 pfam05817, Ribophorin_II, Oligosaccharyltransferase subunit Ribophorin 
II.  This family contains eukaryotic Ribophorin II 
(RPN2) proteins. The mammalian oligosaccharyltransferase (OST) 
is a protein complex that effects the cotranslational N-glycosylation 
of newly synthesized polypeptides, and is composed 
of the following proteins: ribophorins I and II (RI and 
RII), OST48, and Dadl, N33/IAP, OST4, STT3. The family also 
includes the SWP1 protein from yeast. In yeast the oligosaccharyltransferase 
complex is composed 7 or 8 subunits, SWP1, 
being one of them.
Length=624

 Score = 83.9 bits (208),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 14/201 (7%)

Query  83   AHQVFLLLRDPKTGLDISYPFTVKDNGKSRLELTQKDLPVQFLSVAEPLDARLVIG----  138
             HQ F+ L   KT  ++ +      +   + +L    L   F  ++   +  L++G    
Sbjct  429  PHQAFVRLTHQKTKQEVIFVAEPDSSKAYKFDLDLGGLAKDFGYLSGTYEVELIVGDATL  488

Query  139  --SFGSSHAYNEPAFPLIVARNPDEPVPTVEVSRYGKLPEIHHIFKSDPQSPPVIVTLVF  196
                  +    E  FP         P P    S YG  PEI H+F+   + PP +V+  F
Sbjct  489  ENPILWNVGDVELKFP---EEPEKAPSPPDPKSLYGPKPEIKHLFREPEKRPPRVVSDTF  545

Query  197  IGMVLAAFPVLGGLWLFIGVNLNHLPTAFKSAPIPHAVFLGSLVSIEWIFFLYYSHWTLF  256
             G+VLA   +L  LWL +GVNL++ P +  SA +    F   L +I  ++ L++    +F
Sbjct  546  TGLVLAPLLILLVLWLKLGVNLSNFPFSL-SAIL----FHLGLGAILLLYVLFWLQLNMF  600

Query  257  QILPAVAAAGVVAFISGSRAL  277
              L  +A  G+  F++G+R L
Sbjct  601  TTLKYLALLGIFTFLAGNRLL  621



Lambda      K        H        a         alpha
   0.321    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 327287968


Query= TCONS_00035012

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00035013

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00035014

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00030504

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461749 pfam05817, Ribophorin_II, Oligosaccharyltransferase su...  83.9    9e-19


>CDD:461749 pfam05817, Ribophorin_II, Oligosaccharyltransferase subunit Ribophorin 
II.  This family contains eukaryotic Ribophorin II 
(RPN2) proteins. The mammalian oligosaccharyltransferase (OST) 
is a protein complex that effects the cotranslational N-glycosylation 
of newly synthesized polypeptides, and is composed 
of the following proteins: ribophorins I and II (RI and 
RII), OST48, and Dadl, N33/IAP, OST4, STT3. The family also 
includes the SWP1 protein from yeast. In yeast the oligosaccharyltransferase 
complex is composed 7 or 8 subunits, SWP1, 
being one of them.
Length=624

 Score = 83.9 bits (208),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 14/201 (7%)

Query  67   AHQVFLLLRDPKTGLDISYPFTVKDNGKSRLELTQKDLPVQFLSVAEPLDARLVIG----  122
             HQ F+ L   KT  ++ +      +   + +L    L   F  ++   +  L++G    
Sbjct  429  PHQAFVRLTHQKTKQEVIFVAEPDSSKAYKFDLDLGGLAKDFGYLSGTYEVELIVGDATL  488

Query  123  --SFGSSHAYNEPAFPLIVARNPDEPVPTVEVSRYGKLPEIHHIFKSDPQSPPVIVTLVF  180
                  +    E  FP         P P    S YG  PEI H+F+   + PP +V+  F
Sbjct  489  ENPILWNVGDVELKFP---EEPEKAPSPPDPKSLYGPKPEIKHLFREPEKRPPRVVSDTF  545

Query  181  IGMVLAAFPVLGGLWLFIGVNLNHLPTAFKSAPIPHAVFLGSLVSIEWIFFLYYSHWTLF  240
             G+VLA   +L  LWL +GVNL++ P +  SA +    F   L +I  ++ L++    +F
Sbjct  546  TGLVLAPLLILLVLWLKLGVNLSNFPFSL-SAIL----FHLGLGAILLLYVLFWLQLNMF  600

Query  241  QILPAVAAAGVVAFISGSRAL  261
              L  +A  G+  F++G+R L
Sbjct  601  TTLKYLALLGIFTFLAGNRLL  621



Lambda      K        H        a         alpha
   0.322    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00030505

Length=289
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461749 pfam05817, Ribophorin_II, Oligosaccharyltransferase su...  83.5    1e-18


>CDD:461749 pfam05817, Ribophorin_II, Oligosaccharyltransferase subunit Ribophorin 
II.  This family contains eukaryotic Ribophorin II 
(RPN2) proteins. The mammalian oligosaccharyltransferase (OST) 
is a protein complex that effects the cotranslational N-glycosylation 
of newly synthesized polypeptides, and is composed 
of the following proteins: ribophorins I and II (RI and 
RII), OST48, and Dadl, N33/IAP, OST4, STT3. The family also 
includes the SWP1 protein from yeast. In yeast the oligosaccharyltransferase 
complex is composed 7 or 8 subunits, SWP1, 
being one of them.
Length=624

 Score = 83.5 bits (207),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 14/201 (7%)

Query  83   AHQVFLLLRDPKTGLDISYPFTVKDNGKSRLELAQKDLPVQFLSVAEPLDARLVIG----  138
             HQ F+ L   KT  ++ +      +   + +L    L   F  ++   +  L++G    
Sbjct  429  PHQAFVRLTHQKTKQEVIFVAEPDSSKAYKFDLDLGGLAKDFGYLSGTYEVELIVGDATL  488

Query  139  --SFGSSHAYNEPAFPLIVARNPDEPVPTVEVSRYGKLPEIHHIFKSDPQSPPVIVTLVF  196
                  +    E  FP         P P    S YG  PEI H+F+   + PP +V+  F
Sbjct  489  ENPILWNVGDVELKFP---EEPEKAPSPPDPKSLYGPKPEIKHLFREPEKRPPRVVSDTF  545

Query  197  IGMVLAAFPVLGGLWLFIGVNLNHLPTAFKSAPIPHAVFLGSLVSIEWIFFLYYSHWTLF  256
             G+VLA   +L  LWL +GVNL++ P +  SA +    F   L +I  ++ L++    +F
Sbjct  546  TGLVLAPLLILLVLWLKLGVNLSNFPFSL-SAIL----FHLGLGAILLLYVLFWLQLNMF  600

Query  257  QILPAVAAAGVVAFISGSRAL  277
              L  +A  G+  F++G+R L
Sbjct  601  TTLKYLALLGIFTFLAGNRLL  621



Lambda      K        H        a         alpha
   0.321    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 327287968


Query= TCONS_00030506

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00030507

Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395570 pfam00701, DHDPS, Dihydrodipicolinate synthetase famil...  62.8    2e-13


>CDD:395570 pfam00701, DHDPS, Dihydrodipicolinate synthetase family.  This 
family has a TIM barrel structure.
Length=289

 Score = 62.8 bits (153),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 29/117 (25%), Positives = 60/117 (51%), Gaps = 3/117 (3%)

Query  1    MVLVPSYYHFAMDSAAIVSFFEEVADHSPIPIMVYNYPGVAAGLDVDSDMLVKLSAHPNI  60
            + + P Y   +     +   F+ +A+ + +P+++YN P    G+D+  + + +L+ +PNI
Sbjct  101  LAVTPYYNKPS--QEGLYQHFKAIAEATDLPMILYNVPSRT-GVDLTPETVGRLATNPNI  157

Query  61   SGAKLTCGGIGKVPRVTASAVRPFSVLGGQIDWMGPAMAVGAVGAITGMANLYPRVS  117
             G K   G + ++  +   A   F +L G  + M PA+++GA G I+  +N+     
Sbjct  158  VGIKEASGDLDRMINIKKEAGPDFVILSGDDETMLPALSLGADGVISVTSNIAGHRM  214



Lambda      K        H        a         alpha
   0.323    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00030508

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00030509

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00030510

Length=93
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  61.5    1e-13


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 61.5 bits (150),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 38/66 (58%), Gaps = 1/66 (2%)

Query  2    DGLIAAAGIQQETPALEYTAKDANTMFEVNVTGVFMTAQAVAKQMIRFGNGGSIALIASM  61
            D L+  AGI    P  E + +D   + +VN+TGVF   +AV   MI+ G+GG I  I+S+
Sbjct  79   DILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVLPAMIK-GSGGRIVNISSV  137

Query  62   SGTVAN  67
            +G V  
Sbjct  138  AGLVPY  143



Lambda      K        H        a         alpha
   0.319    0.131    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00035017

Length=93
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  61.5    1e-13


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 61.5 bits (150),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 38/66 (58%), Gaps = 1/66 (2%)

Query  2    DGLIAAAGIQQETPALEYTAKDANTMFEVNVTGVFMTAQAVAKQMIRFGNGGSIALIASM  61
            D L+  AGI    P  E + +D   + +VN+TGVF   +AV   MI+ G+GG I  I+S+
Sbjct  79   DILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVLPAMIK-GSGGRIVNISSV  137

Query  62   SGTVAN  67
            +G V  
Sbjct  138  AGLVPY  143



Lambda      K        H        a         alpha
   0.319    0.131    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00035018

Length=93
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  61.5    1e-13


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 61.5 bits (150),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 38/66 (58%), Gaps = 1/66 (2%)

Query  2    DGLIAAAGIQQETPALEYTAKDANTMFEVNVTGVFMTAQAVAKQMIRFGNGGSIALIASM  61
            D L+  AGI    P  E + +D   + +VN+TGVF   +AV   MI+ G+GG I  I+S+
Sbjct  79   DILVNNAGITGLGPFSELSDEDWERVIDVNLTGVFNLTRAVLPAMIK-GSGGRIVNISSV  137

Query  62   SGTVAN  67
            +G V  
Sbjct  138  AGLVPY  143



Lambda      K        H        a         alpha
   0.319    0.131    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00030512

Length=329
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463673 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family....  67.9    6e-14


>CDD:463673 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family.  This 
family contains alpha/beta hydrolase enzymes of diverse specificity.
Length=211

 Score = 67.9 bits (165),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 78/232 (34%), Gaps = 31/232 (13%)

Query  21   LIFIPGSWHRPTCYEPIIRLLEPTLRCVAVSLPSTAYDPEATFKDDLEAAQD--AISAET  78
            ++ + G+        P+  LL   +  +A  LP            DL    D  A+  E 
Sbjct  1    VVLVHGAGLS---AAPLAALLAAGVAVLAPDLPGHGSSSPPPL--DLADLADLAALLDEL  55

Query  79   SNGRNVVVIAHSYGGIVGSSAIKGFAKPKDADNSRSGYVIGLILMASGYTLTGLSFMDSF  138
               R VV++ HS GG V  +A              +  ++  +L+A          + + 
Sbjct  56   GAARPVVLVGHSLGGAVALAAA-------------AAALVVGVLVAP--LAAPPGLLAAL  100

Query  139  FGRPPALWRVNNETGYAELVASPKEIFYHDLPEEEAKYWASQLATQSLKALFEGHEYTYA  198
                  L        +    +  +  F  DLP +     A       L AL        A
Sbjct  101  LALLARLGAALAAPAWLAAESLARG-FLDDLPADAEWAAALARLAALLAALA---LLPLA  156

Query  199  GWKDVPSWY-IGTVEDRAIPVLAQRMLVGMAREMGASVEHRELQTSHSPFLS  249
             W+D+P    +   EDR +P LAQR+   +A   GA +        H P   
Sbjct  157  AWRDLPVPVLVLAEEDRLVPELAQRL---LAALAGARL-VVLPGAGHLPLDD  204



Lambda      K        H        a         alpha
   0.320    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 385413556


Query= TCONS_00030513

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366778 pfam01735, PLA2_B, Lysophospholipase catalytic domain....  491     2e-172


>CDD:366778 pfam01735, PLA2_B, Lysophospholipase catalytic domain.  This 
family consists of Lysophospholipase / phospholipase B EC:3.1.1.5 
and cytosolic phospholipase A2 EC:3.1.4 which also has 
a C2 domain pfam00168. Phospholipase B enzymes catalyze the 
release of fatty acids from lysophsopholipids and are capable 
in vitro of hydrolysing all phospholipids extractable form 
yeast cells. Cytosolic phospholipase A2 associates with natural 
membranes in response to physiological increases in Ca2+ 
and selectively hydrolyzes arachidonyl phospholipids, the 
aligned region corresponds the the carboxy-terminal Ca2+-independent 
catalytic domain of the protein as discussed in.
Length=490

 Score = 491 bits (1265),  Expect = 2e-172, Method: Composition-based stats.
 Identities = 195/344 (57%), Positives = 239/344 (69%), Gaps = 12/344 (3%)

Query  111  IGIAVSGGGYRALMNGAGAIKAFDSRTPNSTSAGQLGGLLQSATYLSGLSGGSWLVGSIY  170
            IGIA SGGGYRA++ GAG + A D+RT N T    LGGLLQSATYL+GLSGGSWLVGS+ 
Sbjct  1    IGIAGSGGGYRAMLGGAGVLAALDNRTDNETG---LGGLLQSATYLAGLSGGSWLVGSLA  57

Query  171  INNFTTISALQTHQK-GTVWQFQNSIFEGPDGGSIQILDSATYYRDISNAVSGKSDAGYP  229
            +NNFT++       +  ++W   +SIF  P G  + I  +   Y DI +AV  K +AG+ 
Sbjct  58   VNNFTSVQDFPDKPEDISIWDLNHSIFN-PGG--LNIPQNIKRYDDIVDAVWKKKNAGFN  114

Query  230  TSITDYWGRALSYQMINATNGGPSYTWSSIALTDAFQKAEMPMPLVVADGRYPGELLISS  289
             S+TD WGRALSY +I +  GGP+YTWSS+   + FQ AEMP P++VADGR PG  +I+ 
Sbjct  115  VSLTDIWGRALSYTLIPSLRGGPNYTWSSLRDAEWFQNAEMPFPIIVADGRKPGTTVINL  174

Query  290  NATVYEFNPWEFGTFDPTVFGFAPLEYLGTKFNGGSVPSNESCVRGFDNVGFVMGTSSTL  349
            NATV+EF+P+EFG++DPT+  F P EYLGTKF  G+      CV GFDN GFVMGTSSTL
Sbjct  175  NATVFEFSPYEFGSWDPTLNSFTPTEYLGTKFFNGTPVKKGKCVPGFDNAGFVMGTSSTL  234

Query  350  FNQFLLQINST-ALPDWLKSVFTDILKDIGENDEDIAQYAPNPFYHF----SNTTNPSAA  404
            FNQFLL INST +LP +L  +   ILKD+ E+ +DI+QY PNPF        N TN    
Sbjct  235  FNQFLLVINSTSSLPSFLNIIIKHILKDLSEDSDDISQYPPNPFQDANDINQNATNSIVD  294

Query  405  ELELDLVDGGEDLQNIPLHPLIQPERHVDVIFAVDSSADTTYSW  448
               L LVDGGED QNIPL PL+QPER VDVIFAVD+SADT   W
Sbjct  295  SDTLFLVDGGEDGQNIPLWPLLQPERDVDVIFAVDNSADTDNDW  338



Lambda      K        H        a         alpha
   0.315    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00030514

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463673 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family....  68.7    5e-14


>CDD:463673 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family.  This 
family contains alpha/beta hydrolase enzymes of diverse specificity.
Length=211

 Score = 68.7 bits (167),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 78/232 (34%), Gaps = 31/232 (13%)

Query  55   LIFIPGSWHRPTCYEPIIRLLEPTLRCVAVSLPSTAYDPEATFKDDLEAAQD--AISAET  112
            ++ + G+        P+  LL   +  +A  LP            DL    D  A+  E 
Sbjct  1    VVLVHGAGLS---AAPLAALLAAGVAVLAPDLPGHGSSSPPPL--DLADLADLAALLDEL  55

Query  113  SNGRNVVVIAHSYGGIVGSSAIKGFAKPKDADNSRSGYVIGLILMASGYTLTGLSFMDSF  172
               R VV++ HS GG V  +A              +  ++  +L+A          + + 
Sbjct  56   GAARPVVLVGHSLGGAVALAAA-------------AAALVVGVLVAP--LAAPPGLLAAL  100

Query  173  FGRPPALWRVNNETGYAELVASPKEIFYHDLPEEEAKYWASQLATQSLKALFEGHEYTYA  232
                  L        +    +  +  F  DLP +     A       L AL        A
Sbjct  101  LALLARLGAALAAPAWLAAESLARG-FLDDLPADAEWAAALARLAALLAALA---LLPLA  156

Query  233  GWKDVPSWY-IGTVEDRAIPVLAQRMLVGMAREMGASVEHRELQTSHSPFLS  283
             W+D+P    +   EDR +P LAQR+   +A   GA +        H P   
Sbjct  157  AWRDLPVPVLVLAEEDRLVPELAQRL---LAALAGARL-VVLPGAGHLPLDD  204



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00035019

Length=329
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463673 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family....  67.9    6e-14


>CDD:463673 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family.  This 
family contains alpha/beta hydrolase enzymes of diverse specificity.
Length=211

 Score = 67.9 bits (165),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 78/232 (34%), Gaps = 31/232 (13%)

Query  21   LIFIPGSWHRPTCYEPIIRLLEPTLRCVAVSLPSTAYDPEATFKDDLEAAQD--AISAET  78
            ++ + G+        P+  LL   +  +A  LP            DL    D  A+  E 
Sbjct  1    VVLVHGAGLS---AAPLAALLAAGVAVLAPDLPGHGSSSPPPL--DLADLADLAALLDEL  55

Query  79   SNGRNVVVIAHSYGGIVGSSAIKGFAKPKDADNSRSGYVIGLILMASGYTLTGLSFMDSF  138
               R VV++ HS GG V  +A              +  ++  +L+A          + + 
Sbjct  56   GAARPVVLVGHSLGGAVALAAA-------------AAALVVGVLVAP--LAAPPGLLAAL  100

Query  139  FGRPPALWRVNNETGYAELVASPKEIFYHDLPEEEAKYWASQLATQSLKALFEGHEYTYA  198
                  L        +    +  +  F  DLP +     A       L AL        A
Sbjct  101  LALLARLGAALAAPAWLAAESLARG-FLDDLPADAEWAAALARLAALLAALA---LLPLA  156

Query  199  GWKDVPSWY-IGTVEDRAIPVLAQRMLVGMAREMGASVEHRELQTSHSPFLS  249
             W+D+P    +   EDR +P LAQR+   +A   GA +        H P   
Sbjct  157  AWRDLPVPVLVLAEEDRLVPELAQRL---LAALAGARL-VVLPGAGHLPLDD  204



Lambda      K        H        a         alpha
   0.320    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 385413556


Query= TCONS_00035020

Length=329
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463673 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family....  67.9    6e-14


>CDD:463673 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family.  This 
family contains alpha/beta hydrolase enzymes of diverse specificity.
Length=211

 Score = 67.9 bits (165),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 78/232 (34%), Gaps = 31/232 (13%)

Query  21   LIFIPGSWHRPTCYEPIIRLLEPTLRCVAVSLPSTAYDPEATFKDDLEAAQD--AISAET  78
            ++ + G+        P+  LL   +  +A  LP            DL    D  A+  E 
Sbjct  1    VVLVHGAGLS---AAPLAALLAAGVAVLAPDLPGHGSSSPPPL--DLADLADLAALLDEL  55

Query  79   SNGRNVVVIAHSYGGIVGSSAIKGFAKPKDADNSRSGYVIGLILMASGYTLTGLSFMDSF  138
               R VV++ HS GG V  +A              +  ++  +L+A          + + 
Sbjct  56   GAARPVVLVGHSLGGAVALAAA-------------AAALVVGVLVAP--LAAPPGLLAAL  100

Query  139  FGRPPALWRVNNETGYAELVASPKEIFYHDLPEEEAKYWASQLATQSLKALFEGHEYTYA  198
                  L        +    +  +  F  DLP +     A       L AL        A
Sbjct  101  LALLARLGAALAAPAWLAAESLARG-FLDDLPADAEWAAALARLAALLAALA---LLPLA  156

Query  199  GWKDVPSWY-IGTVEDRAIPVLAQRMLVGMAREMGASVEHRELQTSHSPFLS  249
             W+D+P    +   EDR +P LAQR+   +A   GA +        H P   
Sbjct  157  AWRDLPVPVLVLAEEDRLVPELAQRL---LAALAGARL-VVLPGAGHLPLDD  204



Lambda      K        H        a         alpha
   0.320    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 385413556


Query= TCONS_00035021

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366778 pfam01735, PLA2_B, Lysophospholipase catalytic domain....  685     0.0  


>CDD:366778 pfam01735, PLA2_B, Lysophospholipase catalytic domain.  This 
family consists of Lysophospholipase / phospholipase B EC:3.1.1.5 
and cytosolic phospholipase A2 EC:3.1.4 which also has 
a C2 domain pfam00168. Phospholipase B enzymes catalyze the 
release of fatty acids from lysophsopholipids and are capable 
in vitro of hydrolysing all phospholipids extractable form 
yeast cells. Cytosolic phospholipase A2 associates with natural 
membranes in response to physiological increases in Ca2+ 
and selectively hydrolyzes arachidonyl phospholipids, the 
aligned region corresponds the the carboxy-terminal Ca2+-independent 
catalytic domain of the protein as discussed in.
Length=490

 Score = 685 bits (1770),  Expect = 0.0, Method: Composition-based stats.
 Identities = 269/497 (54%), Positives = 334/497 (67%), Gaps = 21/497 (4%)

Query  111  IGIAVSGGGYRALMNGAGAIKAFDSRTPNSTSAGQLGGLLQSATYLSGLSGGSWLVGSIY  170
            IGIA SGGGYRA++ GAG + A D+RT N T    LGGLLQSATYL+GLSGGSWLVGS+ 
Sbjct  1    IGIAGSGGGYRAMLGGAGVLAALDNRTDNETG---LGGLLQSATYLAGLSGGSWLVGSLA  57

Query  171  INNFTTISALQTHQK-GTVWQFQNSIFEGPDGGSIQILDSATYYRDISNAVSGKSDAGYP  229
            +NNFT++       +  ++W   +SIF  P G  + I  +   Y DI +AV  K +AG+ 
Sbjct  58   VNNFTSVQDFPDKPEDISIWDLNHSIFN-PGG--LNIPQNIKRYDDIVDAVWKKKNAGFN  114

Query  230  TSITDYWGRALSYQMINATNGGPSYTWSSIALTDAFQKAEMPMPLVVADGRYPGELLISS  289
             S+TD WGRALSY +I +  GGP+YTWSS+   + FQ AEMP P++VADGR PG  +I+ 
Sbjct  115  VSLTDIWGRALSYTLIPSLRGGPNYTWSSLRDAEWFQNAEMPFPIIVADGRKPGTTVINL  174

Query  290  NATVYEFNPWEFGTFDPTVFGFAPLEYLGTKFNGGSVPSNESCVRGFDNVGFVMGTSSTL  349
            NATV+EF+P+EFG++DPT+  F P EYLGTKF  G+      CV GFDN GFVMGTSSTL
Sbjct  175  NATVFEFSPYEFGSWDPTLNSFTPTEYLGTKFFNGTPVKKGKCVPGFDNAGFVMGTSSTL  234

Query  350  FNQFLLQINST-ALPDWLKSVFTDILKDIGENDEDIAQYAPNPFYHF----SNTTNPSAA  404
            FNQFLL INST +LP +L  +   ILKD+ E+ +DI+QY PNPF        N TN    
Sbjct  235  FNQFLLVINSTSSLPSFLNIIIKHILKDLSEDSDDISQYPPNPFQDANDINQNATNSIVD  294

Query  405  ELELDLVDGGEDLQNIPLHPLIQPERHVDVIFAVDSSADTTYSWPNGTALVATYERSLNS  464
               L LVDGGED QNIPL PL+QPER VDVIFAVD+SADT   WP+G +LV TYER    
Sbjct  295  SDTLFLVDGGEDGQNIPLWPLLQPERDVDVIFAVDNSADTDNDWPDGVSLVDTYERQF-E  353

Query  465  SGIANGTSFPAIPDQNTFVNKGLNTRPTFFGCNSSNTTGPS--------PLIVYLPNYPY  516
                 G  FP +PD NTFVN GLNTRPTFFGC++ N T  S        PL+VYLPN P+
Sbjct  354  PLQVKGKKFPYVPDGNTFVNLGLNTRPTFFGCDARNLTDLSARVSDSTPPLVVYLPNEPW  413

Query  517  TAYSNFSTFQPDYTEQERDSTILNGYDVVTMGNSTRDGNWSTCVGCAILSRSLERTNTNV  576
            +  SN STF+  Y + ER   I NG++  T  N T D  ++ CV CAI+ R LER N  +
Sbjct  414  SYMSNLSTFKISYNDSERQGLIENGFEAATQDNETDDPTFAHCVACAIIRRKLERLNITL  473

Query  577  PEICKQCFQRYCWDGSL  593
            P  C+QCF+ YCW+G++
Sbjct  474  PSECEQCFENYCWNGTV  490



Lambda      K        H        a         alpha
   0.316    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 796386600


Query= TCONS_00035022

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366778 pfam01735, PLA2_B, Lysophospholipase catalytic domain....  308     2e-103


>CDD:366778 pfam01735, PLA2_B, Lysophospholipase catalytic domain.  This 
family consists of Lysophospholipase / phospholipase B EC:3.1.1.5 
and cytosolic phospholipase A2 EC:3.1.4 which also has 
a C2 domain pfam00168. Phospholipase B enzymes catalyze the 
release of fatty acids from lysophsopholipids and are capable 
in vitro of hydrolysing all phospholipids extractable form 
yeast cells. Cytosolic phospholipase A2 associates with natural 
membranes in response to physiological increases in Ca2+ 
and selectively hydrolyzes arachidonyl phospholipids, the 
aligned region corresponds the the carboxy-terminal Ca2+-independent 
catalytic domain of the protein as discussed in.
Length=490

 Score = 308 bits (791),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 119/230 (52%), Positives = 146/230 (63%), Gaps = 13/230 (6%)

Query  23   DIGENDEDIAQYAPNPFYHF----SNTTNPSAAELELDLVDGGEDLQNIPLHPLIQPERH  78
            D+ E+ +DI+QY PNPF        N TN       L LVDGGED QNIPL PL+QPER 
Sbjct  262  DLSEDSDDISQYPPNPFQDANDINQNATNSIVDSDTLFLVDGGEDGQNIPLWPLLQPERD  321

Query  79   VDVIFAVDSSADTTYSWPNGTALVATYERSLNSSGIANGTSFPAIPDQNTFVNKGLNTRP  138
            VDVIFAVD+SADT   WP+G +LV TYER         G  FP +PD NTFVN GLNTRP
Sbjct  322  VDVIFAVDNSADTDNDWPDGVSLVDTYERQF-EPLQVKGKKFPYVPDGNTFVNLGLNTRP  380

Query  139  TFFGCNSSNTTGPS--------PLIVYLPNYPYTAYSNFSTFQPDYTEQERDSTILNGYD  190
            TFFGC++ N T  S        PL+VYLPN P++  SN STF+  Y + ER   I NG++
Sbjct  381  TFFGCDARNLTDLSARVSDSTPPLVVYLPNEPWSYMSNLSTFKISYNDSERQGLIENGFE  440

Query  191  VVTMGNSTRDGNWSTCVGCAILSRSLERTNTNVPEICKQCFQRYCWDGSL  240
              T  N T D  ++ CV CAI+ R LER N  +P  C+QCF+ YCW+G++
Sbjct  441  AATQDNETDDPTFAHCVACAIIRRKLERLNITLPSECEQCFENYCWNGTV  490



Lambda      K        H        a         alpha
   0.316    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00030516

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366778 pfam01735, PLA2_B, Lysophospholipase catalytic domain....  500     4e-177


>CDD:366778 pfam01735, PLA2_B, Lysophospholipase catalytic domain.  This 
family consists of Lysophospholipase / phospholipase B EC:3.1.1.5 
and cytosolic phospholipase A2 EC:3.1.4 which also has 
a C2 domain pfam00168. Phospholipase B enzymes catalyze the 
release of fatty acids from lysophsopholipids and are capable 
in vitro of hydrolysing all phospholipids extractable form 
yeast cells. Cytosolic phospholipase A2 associates with natural 
membranes in response to physiological increases in Ca2+ 
and selectively hydrolyzes arachidonyl phospholipids, the 
aligned region corresponds the the carboxy-terminal Ca2+-independent 
catalytic domain of the protein as discussed in.
Length=490

 Score = 500 bits (1289),  Expect = 4e-177, Method: Composition-based stats.
 Identities = 198/363 (55%), Positives = 244/363 (67%), Gaps = 14/363 (4%)

Query  1    MINATNGGPSYTWSSIALTDAFQKAEMPMPLVVADGRYPGELLISSNATVYEFNPWEFGT  60
            +I +  GGP+YTWSS+   + FQ AEMP P++VADGR PG  +I+ NATV+EF+P+EFG+
Sbjct  129  LIPSLRGGPNYTWSSLRDAEWFQNAEMPFPIIVADGRKPGTTVINLNATVFEFSPYEFGS  188

Query  61   FDPTVFGFAPLEYLGTKFNGGSVPSNESCVRGFDNVGFVMGTSSTLFNQFLLQINST-AL  119
            +DPT+  F P EYLGTKF  G+      CV GFDN GFVMGTSSTLFNQFLL INST +L
Sbjct  189  WDPTLNSFTPTEYLGTKFFNGTPVKKGKCVPGFDNAGFVMGTSSTLFNQFLLVINSTSSL  248

Query  120  PDWLKSVFTDILKDIGENDEDIAQYAPNPFYHF----SNTTNPSAAELELDLVDGGEDLQ  175
            P +L  +   ILKD+ E+ +DI+QY PNPF        N TN       L LVDGGED Q
Sbjct  249  PSFLNIIIKHILKDLSEDSDDISQYPPNPFQDANDINQNATNSIVDSDTLFLVDGGEDGQ  308

Query  176  NIPLHPLIQPERHVDVIFAVDSSADTTYSWPNGTALVATYERSLNSSGIANGTSFPAIPD  235
            NIPL PL+QPER VDVIFAVD+SADT   WP+G +LV TYER         G  FP +PD
Sbjct  309  NIPLWPLLQPERDVDVIFAVDNSADTDNDWPDGVSLVDTYERQF-EPLQVKGKKFPYVPD  367

Query  236  QNTFVNKGLNTRPTFFGCNSSNTTGPS--------PLIVYLPNYPYTAYSNFSTFQPDYT  287
             NTFVN GLNTRPTFFGC++ N T  S        PL+VYLPN P++  SN STF+  Y 
Sbjct  368  GNTFVNLGLNTRPTFFGCDARNLTDLSARVSDSTPPLVVYLPNEPWSYMSNLSTFKISYN  427

Query  288  EQERDSTILNGYDVVTMGNSTRDGNWSTCVGCAILSRSLERTNTNVPEICKQCFQRYCWD  347
            + ER   I NG++  T  N T D  ++ CV CAI+ R LER N  +P  C+QCF+ YCW+
Sbjct  428  DSERQGLIENGFEAATQDNETDDPTFAHCVACAIIRRKLERLNITLPSECEQCFENYCWN  487

Query  348  GSL  350
            G++
Sbjct  488  GTV  490



Lambda      K        H        a         alpha
   0.316    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00030515

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366778 pfam01735, PLA2_B, Lysophospholipase catalytic domain....  685     0.0  


>CDD:366778 pfam01735, PLA2_B, Lysophospholipase catalytic domain.  This 
family consists of Lysophospholipase / phospholipase B EC:3.1.1.5 
and cytosolic phospholipase A2 EC:3.1.4 which also has 
a C2 domain pfam00168. Phospholipase B enzymes catalyze the 
release of fatty acids from lysophsopholipids and are capable 
in vitro of hydrolysing all phospholipids extractable form 
yeast cells. Cytosolic phospholipase A2 associates with natural 
membranes in response to physiological increases in Ca2+ 
and selectively hydrolyzes arachidonyl phospholipids, the 
aligned region corresponds the the carboxy-terminal Ca2+-independent 
catalytic domain of the protein as discussed in.
Length=490

 Score = 685 bits (1770),  Expect = 0.0, Method: Composition-based stats.
 Identities = 269/497 (54%), Positives = 334/497 (67%), Gaps = 21/497 (4%)

Query  111  IGIAVSGGGYRALMNGAGAIKAFDSRTPNSTSAGQLGGLLQSATYLSGLSGGSWLVGSIY  170
            IGIA SGGGYRA++ GAG + A D+RT N T    LGGLLQSATYL+GLSGGSWLVGS+ 
Sbjct  1    IGIAGSGGGYRAMLGGAGVLAALDNRTDNETG---LGGLLQSATYLAGLSGGSWLVGSLA  57

Query  171  INNFTTISALQTHQK-GTVWQFQNSIFEGPDGGSIQILDSATYYRDISNAVSGKSDAGYP  229
            +NNFT++       +  ++W   +SIF  P G  + I  +   Y DI +AV  K +AG+ 
Sbjct  58   VNNFTSVQDFPDKPEDISIWDLNHSIFN-PGG--LNIPQNIKRYDDIVDAVWKKKNAGFN  114

Query  230  TSITDYWGRALSYQMINATNGGPSYTWSSIALTDAFQKAEMPMPLVVADGRYPGELLISS  289
             S+TD WGRALSY +I +  GGP+YTWSS+   + FQ AEMP P++VADGR PG  +I+ 
Sbjct  115  VSLTDIWGRALSYTLIPSLRGGPNYTWSSLRDAEWFQNAEMPFPIIVADGRKPGTTVINL  174

Query  290  NATVYEFNPWEFGTFDPTVFGFAPLEYLGTKFNGGSVPSNESCVRGFDNVGFVMGTSSTL  349
            NATV+EF+P+EFG++DPT+  F P EYLGTKF  G+      CV GFDN GFVMGTSSTL
Sbjct  175  NATVFEFSPYEFGSWDPTLNSFTPTEYLGTKFFNGTPVKKGKCVPGFDNAGFVMGTSSTL  234

Query  350  FNQFLLQINST-ALPDWLKSVFTDILKDIGENDEDIAQYAPNPFYHF----SNTTNPSAA  404
            FNQFLL INST +LP +L  +   ILKD+ E+ +DI+QY PNPF        N TN    
Sbjct  235  FNQFLLVINSTSSLPSFLNIIIKHILKDLSEDSDDISQYPPNPFQDANDINQNATNSIVD  294

Query  405  ELELDLVDGGEDLQNIPLHPLIQPERHVDVIFAVDSSADTTYSWPNGTALVATYERSLNS  464
               L LVDGGED QNIPL PL+QPER VDVIFAVD+SADT   WP+G +LV TYER    
Sbjct  295  SDTLFLVDGGEDGQNIPLWPLLQPERDVDVIFAVDNSADTDNDWPDGVSLVDTYERQF-E  353

Query  465  SGIANGTSFPAIPDQNTFVNKGLNTRPTFFGCNSSNTTGPS--------PLIVYLPNYPY  516
                 G  FP +PD NTFVN GLNTRPTFFGC++ N T  S        PL+VYLPN P+
Sbjct  354  PLQVKGKKFPYVPDGNTFVNLGLNTRPTFFGCDARNLTDLSARVSDSTPPLVVYLPNEPW  413

Query  517  TAYSNFSTFQPDYTEQERDSTILNGYDVVTMGNSTRDGNWSTCVGCAILSRSLERTNTNV  576
            +  SN STF+  Y + ER   I NG++  T  N T D  ++ CV CAI+ R LER N  +
Sbjct  414  SYMSNLSTFKISYNDSERQGLIENGFEAATQDNETDDPTFAHCVACAIIRRKLERLNITL  473

Query  577  PEICKQCFQRYCWDGSL  593
            P  C+QCF+ YCW+G++
Sbjct  474  PSECEQCFENYCWNGTV  490



Lambda      K        H        a         alpha
   0.316    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 796386600


Query= TCONS_00035023

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366778 pfam01735, PLA2_B, Lysophospholipase catalytic domain....  308     2e-103


>CDD:366778 pfam01735, PLA2_B, Lysophospholipase catalytic domain.  This 
family consists of Lysophospholipase / phospholipase B EC:3.1.1.5 
and cytosolic phospholipase A2 EC:3.1.4 which also has 
a C2 domain pfam00168. Phospholipase B enzymes catalyze the 
release of fatty acids from lysophsopholipids and are capable 
in vitro of hydrolysing all phospholipids extractable form 
yeast cells. Cytosolic phospholipase A2 associates with natural 
membranes in response to physiological increases in Ca2+ 
and selectively hydrolyzes arachidonyl phospholipids, the 
aligned region corresponds the the carboxy-terminal Ca2+-independent 
catalytic domain of the protein as discussed in.
Length=490

 Score = 308 bits (791),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 119/230 (52%), Positives = 146/230 (63%), Gaps = 13/230 (6%)

Query  23   DIGENDEDIAQYAPNPFYHF----SNTTNPSAAELELDLVDGGEDLQNIPLHPLIQPERH  78
            D+ E+ +DI+QY PNPF        N TN       L LVDGGED QNIPL PL+QPER 
Sbjct  262  DLSEDSDDISQYPPNPFQDANDINQNATNSIVDSDTLFLVDGGEDGQNIPLWPLLQPERD  321

Query  79   VDVIFAVDSSADTTYSWPNGTALVATYERSLNSSGIANGTSFPAIPDQNTFVNKGLNTRP  138
            VDVIFAVD+SADT   WP+G +LV TYER         G  FP +PD NTFVN GLNTRP
Sbjct  322  VDVIFAVDNSADTDNDWPDGVSLVDTYERQF-EPLQVKGKKFPYVPDGNTFVNLGLNTRP  380

Query  139  TFFGCNSSNTTGPS--------PLIVYLPNYPYTAYSNFSTFQPDYTEQERDSTILNGYD  190
            TFFGC++ N T  S        PL+VYLPN P++  SN STF+  Y + ER   I NG++
Sbjct  381  TFFGCDARNLTDLSARVSDSTPPLVVYLPNEPWSYMSNLSTFKISYNDSERQGLIENGFE  440

Query  191  VVTMGNSTRDGNWSTCVGCAILSRSLERTNTNVPEICKQCFQRYCWDGSL  240
              T  N T D  ++ CV CAI+ R LER N  +P  C+QCF+ YCW+G++
Sbjct  441  AATQDNETDDPTFAHCVACAIIRRKLERLNITLPSECEQCFENYCWNGTV  490



Lambda      K        H        a         alpha
   0.316    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00030517

Length=1507


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1910602496


Query= TCONS_00030518

Length=1507


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1910602496


Query= TCONS_00030519

Length=1317


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.124    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0754    0.140     1.90     42.6     43.6 

Effective search space used: 1678075400


Query= TCONS_00035024

Length=1507


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1910602496


Query= TCONS_00030520

Length=1507


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1910602496


Query= TCONS_00035025

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            64.4    1e-12


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 64.4 bits (157),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query  148  TQAGIMQGSFTAAQFLTAVWWGRLADAEWMGRKRVLLIGLLGTCISCLGFGFSRSFAAAV  207
            T+ G++   F+    L     GRL+D    GR+RVLLIGLL   +  L   F+ S    +
Sbjct  32   TEIGLLLTLFSLGYALAQPLAGRLSDR--FGRRRVLLIGLLLFALGLLLLLFASSLWLLL  89

Query  208  VFRVLGGILNSNV-GVMRTMISEIIEEKK  235
            V RVL G+    +      +I++    ++
Sbjct  90   VLRVLQGLGAGALFPAALALIADWFPPEE  118



Lambda      K        H        a         alpha
   0.318    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 249381332


Query= TCONS_00030521

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            81.3    4e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 81.3 bits (201),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 130/418 (31%), Gaps = 106/418 (25%)

Query  194  TQAGIMQGSFTAAQFLTAVWWGRLADAEWMGRKRVLLIGLLGTCISCLGFGFSRSFAAAV  253
            T+ G++   F+    L     GRL+D    GR+RVLLIGLL   +  L   F+ S    +
Sbjct  32   TEIGLLLTLFSLGYALAQPLAGRLSDR--FGRRRVLLIGLLLFALGLLLLLFASSLWLLL  89

Query  254  VFRVLGGILNSNV-GVMRTMISEIIEEKKYQSRAFLLLPMCFNIGVIVGPIVGGSLADPI  312
            V RVL G+    +      +I++    ++ + RA  L+   F +G  +GP++GG LA   
Sbjct  90   VLRVLQGLGAGALFPAALALIADWFPPEE-RGRALGLVSAGFGLGAALGPLLGGLLAS--  146

Query  313  HSYPHLFGPGSFFGGKHGVGWMERWPFALPNILNAIFTFAAFLAILFGLDETHEVARYRS  372
                               GW  R  F    ++ AI +  A + +L             +
Sbjct  147  -----------------LFGW--RAAF----LILAILSLLAAVLLLLPRPPPESKRPKPA  183

Query  373  DWGRQVGRTLFGFFSRRRVPRHYRQLRNLEDNESLYMDGSVTSTSAPSSPIRLQGLPRHK  432
            +  R      +    R  V                                         
Sbjct  184  EEARLSLIVAWKALLRDPV-----------------------------------------  202

Query  433  RPGFRQIWTPNVLLTLLVHFLLAFHTSAFNAMTFVFLPTPRAPENSRRGFFHFSGGLGLP  492
                            L   L              +LP              +   LGL 
Sbjct  203  ----------------LWLLLALLLFGFAFFGLLTYLPL-------------YQEVLGLS  233

Query  493  SSRVGLATAIIGVIGLPLQIFVYPHVQSRLGTLSSFRTFLPFSPVAYTLMPFLVIIPRYP  552
            +   GL   + G++G   ++ +   +  RLG        L    +A   +  L +     
Sbjct  234  ALLAGLLLGLGGLLGAIGRLLL-GRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSL  292

Query  553  WLVWSAFTAVVGLQVISRTFALPAAIILVNNCVTDPSILGTVHGVAQSIASAARTLGP  610
            WL+ +      G          PA   LV++ +      GT  G+  +  S    LGP
Sbjct  293  WLLLALLLLGFGF-----GLVFPALNALVSD-LAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.324    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 845054670


Query= TCONS_00030522

Length=620
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            82.5    2e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 82.5 bits (204),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 130/418 (31%), Gaps = 106/418 (25%)

Query  148  TQAGIMQGSFTAAQFLTAVWWGRLADAEWMGRKRVLLIGLLGTCISCLGFGFSRSFAAAV  207
            T+ G++   F+    L     GRL+D    GR+RVLLIGLL   +  L   F+ S    +
Sbjct  32   TEIGLLLTLFSLGYALAQPLAGRLSDR--FGRRRVLLIGLLLFALGLLLLLFASSLWLLL  89

Query  208  VFRVLGGILNSNV-GVMRTMISEIIEEKKYQSRAFLLLPMCFNIGVIVGPIVGGSLADPI  266
            V RVL G+    +      +I++    ++ + RA  L+   F +G  +GP++GG LA   
Sbjct  90   VLRVLQGLGAGALFPAALALIADWFPPEE-RGRALGLVSAGFGLGAALGPLLGGLLAS--  146

Query  267  HSYPHLFGPGSFFGGKHGVGWMERWPFALPNILNAIFTFAAFLAILFGLDETHEVARYRS  326
                               GW  R  F    ++ AI +  A + +L             +
Sbjct  147  -----------------LFGW--RAAF----LILAILSLLAAVLLLLPRPPPESKRPKPA  183

Query  327  DWGRQVGRTLFGFFSRRRVPRHYRQLRNLEDNESLYMDGSVTSTSAPSSPIRLQGLPRHK  386
            +  R      +    R  V                                         
Sbjct  184  EEARLSLIVAWKALLRDPV-----------------------------------------  202

Query  387  RPGFRQIWTPNVLLTLLVHFLLAFHTSAFNAMTFVFLPTPRAPENSRRGFFHFSGGLGLP  446
                            L   L              +LP              +   LGL 
Sbjct  203  ----------------LWLLLALLLFGFAFFGLLTYLPL-------------YQEVLGLS  233

Query  447  SSRVGLATAIIGVIGLPLQIFVYPHVQSRLGTLSSFRTFLPFSPVAYTLMPFLVIIPRYP  506
            +   GL   + G++G   ++ +   +  RLG        L    +A   +  L +     
Sbjct  234  ALLAGLLLGLGGLLGAIGRLLL-GRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSL  292

Query  507  WLVWSAFTAVVGLQVISRTFALPAAIILVNNCVTDPSILGTVHGVAQSIASAARTLGP  564
            WL+ +      G          PA   LV++ +      GT  G+  +  S    LGP
Sbjct  293  WLLLALLLLGFGF-----GLVFPALNALVSD-LAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.324    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789057984


Query= TCONS_00030523

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426279 pfam01474, DAHP_synth_2, Class-II DAHP synthetase fami...  857     0.0  


>CDD:426279 pfam01474, DAHP_synth_2, Class-II DAHP synthetase family.  Members 
of this family are aldolase enzymes that catalyze the 
first step of the shikimate pathway.
Length=437

 Score = 857 bits (2216),  Expect = 0.0, Method: Composition-based stats.
 Identities = 270/445 (61%), Positives = 330/445 (74%), Gaps = 9/445 (2%)

Query  18   WTPSSWTTKPIKQDVVYDDREGVQAALSKLQKLPPLVTTQEIANLKKSLRNVALGKAFVL  77
            W+PSSW +KP KQ   Y D   ++A L++L  LPPLV   EI  LK  L +VA G+AF+L
Sbjct  1    WSPSSWRSKPAKQQPTYPDPAALEAVLAELASLPPLVFAGEIRRLKAQLADVARGEAFLL  60

Query  78   QGGDCAELFDYCNQDMIEAKLKLLLQMSLILIWGANKPVVRIARIAGQFAKPRSSPMEVV  137
            QGGDCAE FD C  D I  KLK+LLQM+++L +GA+KPVV++ RIAGQ+AKPRSSP E V
Sbjct  61   QGGDCAESFDECTADNIRDKLKVLLQMAVVLTYGASKPVVKVGRIAGQYAKPRSSPTETV  120

Query  138  NGVEMPSFRGDNINGFAATAESRRPDPSRLVSAYFHSAATLNYMRASLSSGLADLHSPLD  197
            +GV +PS+RGD +NGF  T E+RRPDP RL+ AYFHSAATLN +RA  S G ADLH   D
Sbjct  121  DGVTLPSYRGDIVNGFEFTEEARRPDPERLLRAYFHSAATLNLLRAFASGGFADLHRVHD  180

Query  198  WGLGHVIEPSIKEKYERIVNRVKDALRFMHTVGIDT-DRGVETVDVFTSHEGLLLEYEQS  256
            W L  V +  + E+YE + +R+ DALRFM   G+D+ D  + TVD +TSHE LLL+YE++
Sbjct  181  WNLDFVRDSPLGERYEELADRIDDALRFMRACGVDSEDPALRTVDFYTSHEALLLDYEEA  240

Query  257  LTRLLRNPPTTTPQPTASYYATSAHFLWIGDRTRQLDGAHVEFFRGIANPIGIKIGPSMT  316
            LTR+           T  +Y TSAHFLWIGDRTRQLDGAHVEFFRGI NPIG+K+GP+ T
Sbjct  241  LTRV--------DSTTGDWYDTSAHFLWIGDRTRQLDGAHVEFFRGIRNPIGVKVGPTTT  292

Query  317  PDELVRLLDIVNPNREIGKVTLISRYGASKISQHLPTHIAAVQRSGHLPVWQCDPMHGNT  376
            PDEL+RLLDI+NP+ E G++TLI+R GA K+   LP  I AV+ SGH  VW CDPMHGNT
Sbjct  293  PDELLRLLDILNPDNEPGRLTLITRMGADKVRDLLPPLIEAVKASGHKVVWSCDPMHGNT  352

Query  377  QTTPSGVKTRHFSDILSELRQALEIHRAAQSFLGGVHLELTGEAVTECVGGAGGLTEEGL  436
             TT SG KTR F DIL E+R   E+HRA  +  GGVHLELTG+ VTEC+GG+ GLTEE L
Sbjct  353  ITTSSGYKTRRFDDILDEVRGFFEVHRAEGTHPGGVHLELTGDDVTECLGGSRGLTEEDL  412

Query  437  SERYTTFCDPRLNEKQALELAFLVA  461
            S RY TFCDPRLN +Q+LELAFL+A
Sbjct  413  SLRYETFCDPRLNAEQSLELAFLIA  437



Lambda      K        H        a         alpha
   0.319    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00030524

Length=43
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426279 pfam01474, DAHP_synth_2, Class-II DAHP synthetase fami...  101     2e-28


>CDD:426279 pfam01474, DAHP_synth_2, Class-II DAHP synthetase family.  Members 
of this family are aldolase enzymes that catalyze the 
first step of the shikimate pathway.
Length=437

 Score = 101 bits (255),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 28/42 (67%), Positives = 37/42 (88%), Gaps = 0/42 (0%)

Query  2    IEAKLKLLLQMSLILIWGANKPVVRIARIAGQFAKPRSSPME  43
            I  KLK+LLQM+++L +GA+KPVV++ RIAGQ+AKPRSSP E
Sbjct  77   IRDKLKVLLQMAVVLTYGASKPVVKVGRIAGQYAKPRSSPTE  118



Lambda      K        H        a         alpha
   0.325    0.137    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00030525

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426279 pfam01474, DAHP_synth_2, Class-II DAHP synthetase fami...  857     0.0  


>CDD:426279 pfam01474, DAHP_synth_2, Class-II DAHP synthetase family.  Members 
of this family are aldolase enzymes that catalyze the 
first step of the shikimate pathway.
Length=437

 Score = 857 bits (2216),  Expect = 0.0, Method: Composition-based stats.
 Identities = 270/445 (61%), Positives = 330/445 (74%), Gaps = 9/445 (2%)

Query  4    WTPSSWTTKPIKQDVVYDDREGVQAALSKLQKLPPLVTTQEIANLKKSLRNVALGKAFVL  63
            W+PSSW +KP KQ   Y D   ++A L++L  LPPLV   EI  LK  L +VA G+AF+L
Sbjct  1    WSPSSWRSKPAKQQPTYPDPAALEAVLAELASLPPLVFAGEIRRLKAQLADVARGEAFLL  60

Query  64   QGGDCAELFDYCNQDMIEAKLKLLLQMSLILIWGANKPVVRIARIAGQFAKPRSSPMEVV  123
            QGGDCAE FD C  D I  KLK+LLQM+++L +GA+KPVV++ RIAGQ+AKPRSSP E V
Sbjct  61   QGGDCAESFDECTADNIRDKLKVLLQMAVVLTYGASKPVVKVGRIAGQYAKPRSSPTETV  120

Query  124  NGVEMPSFRGDNINGFAATAESRRPDPSRLVSAYFHSAATLNYMRASLSSGLADLHSPLD  183
            +GV +PS+RGD +NGF  T E+RRPDP RL+ AYFHSAATLN +RA  S G ADLH   D
Sbjct  121  DGVTLPSYRGDIVNGFEFTEEARRPDPERLLRAYFHSAATLNLLRAFASGGFADLHRVHD  180

Query  184  WGLGHVIEPSIKEKYERIVNRVKDALRFMHTVGIDT-DRGVETVDVFTSHEGLLLEYEQS  242
            W L  V +  + E+YE + +R+ DALRFM   G+D+ D  + TVD +TSHE LLL+YE++
Sbjct  181  WNLDFVRDSPLGERYEELADRIDDALRFMRACGVDSEDPALRTVDFYTSHEALLLDYEEA  240

Query  243  LTRLLRNPPTTTPQPTASYYATSAHFLWIGDRTRQLDGAHVEFFRGIANPIGIKIGPSMT  302
            LTR+           T  +Y TSAHFLWIGDRTRQLDGAHVEFFRGI NPIG+K+GP+ T
Sbjct  241  LTRV--------DSTTGDWYDTSAHFLWIGDRTRQLDGAHVEFFRGIRNPIGVKVGPTTT  292

Query  303  PDELVRLLDIVNPNREIGKVTLISRYGASKISQHLPTHIAAVQRSGHLPVWQCDPMHGNT  362
            PDEL+RLLDI+NP+ E G++TLI+R GA K+   LP  I AV+ SGH  VW CDPMHGNT
Sbjct  293  PDELLRLLDILNPDNEPGRLTLITRMGADKVRDLLPPLIEAVKASGHKVVWSCDPMHGNT  352

Query  363  QTTPSGVKTRHFSDILSELRQALEIHRAAQSFLGGVHLELTGEAVTECVGGAGGLTEEGL  422
             TT SG KTR F DIL E+R   E+HRA  +  GGVHLELTG+ VTEC+GG+ GLTEE L
Sbjct  353  ITTSSGYKTRRFDDILDEVRGFFEVHRAEGTHPGGVHLELTGDDVTECLGGSRGLTEEDL  412

Query  423  SERYTTFCDPRLNEKQALELAFLVA  447
            S RY TFCDPRLN +Q+LELAFL+A
Sbjct  413  SLRYETFCDPRLNAEQSLELAFLIA  437



Lambda      K        H        a         alpha
   0.319    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 570537888


Query= TCONS_00035026

Length=369


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00035027

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00035029

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00030527

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  103     9e-28


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 103 bits (258),  Expect = 9e-28, Method: Composition-based stats.
 Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 17/163 (10%)

Query  49   LRNVTLAIAENSCTAIVGGSGSGKSTIASLILSLYETPLSMCKTPT---ISIGGLDIRRL  105
            L+NV+L +      A+VG +G+GKST+  LI  L         +PT   I + G D+   
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLL--------SPTEGTILLDGQDLTDD  52

Query  106  HTPSLRSLISIVSQQPTVFPG-TIHHNICYGLRDESPLRELHNVRTAAQAAGIDDFIVSL  164
               SLR  I  V Q P +FP  T+  N+  GL  +   +   + R            + L
Sbjct  53   ERKSLRKEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEK-----LGL  107

Query  165  PDGYSTIIGDGGVGLSGGQAQRLAIARALVRRPQVLILDEATS  207
             D     +G+    LSGGQ QR+AIARAL+ +P++L+LDE T+
Sbjct  108  GDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.318    0.135    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00035030

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  103     9e-28


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 103 bits (258),  Expect = 9e-28, Method: Composition-based stats.
 Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 17/163 (10%)

Query  49   LRNVTLAIAENSCTAIVGGSGSGKSTIASLILSLYETPLSMCKTPT---ISIGGLDIRRL  105
            L+NV+L +      A+VG +G+GKST+  LI  L         +PT   I + G D+   
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLL--------SPTEGTILLDGQDLTDD  52

Query  106  HTPSLRSLISIVSQQPTVFPG-TIHHNICYGLRDESPLRELHNVRTAAQAAGIDDFIVSL  164
               SLR  I  V Q P +FP  T+  N+  GL  +   +   + R            + L
Sbjct  53   ERKSLRKEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEK-----LGL  107

Query  165  PDGYSTIIGDGGVGLSGGQAQRLAIARALVRRPQVLILDEATS  207
             D     +G+    LSGGQ QR+AIARAL+ +P++L+LDE T+
Sbjct  108  GDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150



Lambda      K        H        a         alpha
   0.318    0.135    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00030528

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.140    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00035031

Length=1788
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463499 pfam12231, Rif1_N, Rap1-interacting factor 1 N termina...  547     0.0  


>CDD:463499 pfam12231, Rif1_N, Rap1-interacting factor 1 N terminal.  This 
domain family is found in eukaryotes, and is typically between 
135 and 146 amino acids in length. Rif1 is a protein which 
interacts with Rap1 to regulate telomere length. Interaction 
with telomeres limits their length. The N terminal region 
contains many HEAT- and ARMADILLO- type repeats. These are 
helical folds which form extended curved proteins or RNA interface 
surfaces.
Length=363

 Score = 547 bits (1411),  Expect = 0.0, Method: Composition-based stats.
 Identities = 161/363 (44%), Positives = 243/363 (67%), Gaps = 0/363 (0%)

Query  146  AYMQFFGALRAYEGLPSEQELGQKLGLISQFIQRDLSTDLGDDVPLGTNLVIQALKLAAA  205
            AYM    AL+AY+ LP    L  K+ L+ QFIQRD+S+   +  PL ++LVIQALKL   
Sbjct  1    AYMMLSRALKAYDNLPDRDALQDKMSLLCQFIQRDISSANSETGPLDSSLVIQALKLLGT  60

Query  206  LSWNIEIAAHLPDEFKVFLVEHSINALESAKAPKSVLTHYMSILSTQNFHSKIMTNARII  265
              WN  IA+ L D+F VF+++HSI +LE    PK + TH + +LS QNF  KIMT+ R+ 
Sbjct  61   FLWNPAIASTLSDDFGVFIIDHSIRSLEDPSTPKDIATHLLWVLSQQNFPPKIMTSDRVG  120

Query  266  RLLTVLGDITSRVNGNAIVFQRLSIYQRLLTQSKSIFVSQSGLWVEHLLSGLLHHVKDTR  325
            RLLT L +I  RV G +I+ +RL+IY+RLL Q+  +  + + LW+  L +G+L  VKD R
Sbjct  121  RLLTALHNIEERVKGKSIIMERLNIYRRLLEQAPQLMAAHADLWLPDLFTGMLSSVKDIR  180

Query  326  IKAISLGFQTSMICGPNPSLSKSIRDLFDRPLDNGRKLVSEICERMSRMMANVESGVHVP  385
             +AISLG + ++  GP   +S+++ +L DR L++G+  +    ER+ +M+ + ++ VHVP
Sbjct  181  ERAISLGLEAALALGPEKEVSRAVLELLDRELEDGKTYIEYYIERLQKMLKDKDNAVHVP  240

Query  386  QVWSIIVLLLRSKRLSIDQWEHFKEWVLVLQRCFNCSESSIKAQAILGWNRFVYVVSPSD  445
            Q+WS+++LLLR KR S++ WEHF EW+ ++Q+CFN S+   K +A + WNR +Y ++P +
Sbjct  241  QIWSVVILLLRKKRHSLESWEHFNEWLKLIQKCFNSSDPLTKIEANIAWNRLIYALNPDE  300

Query  446  TTSRSMLRMLSKPIMSQFERKKQERHGSQPGQLALCSYHNLLYYAFRPSATLQHLDIVWE  505
            +TS   L++L +P++SQ ERKK ++      +  L SY NLLYYAFRP A+ + LD+ W+
Sbjct  301  STSPKRLKLLCQPLLSQLERKKSDKSAPVLREAVLSSYCNLLYYAFRPGASHEQLDLYWD  360

Query  506  EYV  508
            E V
Sbjct  361  EVV  363



Lambda      K        H        a         alpha
   0.314    0.128    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2257402912


Query= TCONS_00030530

Length=1703
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463499 pfam12231, Rif1_N, Rap1-interacting factor 1 N termina...  548     0.0  


>CDD:463499 pfam12231, Rif1_N, Rap1-interacting factor 1 N terminal.  This 
domain family is found in eukaryotes, and is typically between 
135 and 146 amino acids in length. Rif1 is a protein which 
interacts with Rap1 to regulate telomere length. Interaction 
with telomeres limits their length. The N terminal region 
contains many HEAT- and ARMADILLO- type repeats. These are 
helical folds which form extended curved proteins or RNA interface 
surfaces.
Length=363

 Score = 548 bits (1414),  Expect = 0.0, Method: Composition-based stats.
 Identities = 161/363 (44%), Positives = 243/363 (67%), Gaps = 0/363 (0%)

Query  146  AYMQFFGALRAYEGLPSEQELGQKLGLISQFIQRDLSTDLGDDVPLGTNLVIQALKLAAA  205
            AYM    AL+AY+ LP    L  K+ L+ QFIQRD+S+   +  PL ++LVIQALKL   
Sbjct  1    AYMMLSRALKAYDNLPDRDALQDKMSLLCQFIQRDISSANSETGPLDSSLVIQALKLLGT  60

Query  206  LSWNIEIAAHLPDEFKVFLVEHSINALESAKAPKSVLTHYMSILSTQNFHSKIMTNARII  265
              WN  IA+ L D+F VF+++HSI +LE    PK + TH + +LS QNF  KIMT+ R+ 
Sbjct  61   FLWNPAIASTLSDDFGVFIIDHSIRSLEDPSTPKDIATHLLWVLSQQNFPPKIMTSDRVG  120

Query  266  RLLTVLGDITSRVNGNAIVFQRLSIYQRLLTQSKSIFVSQSGLWVEHLLSGLLHHVKDTR  325
            RLLT L +I  RV G +I+ +RL+IY+RLL Q+  +  + + LW+  L +G+L  VKD R
Sbjct  121  RLLTALHNIEERVKGKSIIMERLNIYRRLLEQAPQLMAAHADLWLPDLFTGMLSSVKDIR  180

Query  326  IKAISLGFQTSMICGPNPSLSKSIRDLFDRPLDNGRKLVSEICERMSRMMANVESGVHVP  385
             +AISLG + ++  GP   +S+++ +L DR L++G+  +    ER+ +M+ + ++ VHVP
Sbjct  181  ERAISLGLEAALALGPEKEVSRAVLELLDRELEDGKTYIEYYIERLQKMLKDKDNAVHVP  240

Query  386  QVWSIIVLLLRSKRLSIDQWEHFKEWVLVLQRCFNCSESSIKAQAILGWNRFVYVVSPSD  445
            Q+WS+++LLLR KR S++ WEHF EW+ ++Q+CFN S+   K +A + WNR +Y ++P +
Sbjct  241  QIWSVVILLLRKKRHSLESWEHFNEWLKLIQKCFNSSDPLTKIEANIAWNRLIYALNPDE  300

Query  446  TTSRSMLRMLSKPIMSQFERKKQERHGSQPGQLALCSYHNLLYYAFRPSATLQHLDIVWE  505
            +TS   L++L +P++SQ ERKK ++      +  L SY NLLYYAFRP A+ + LD+ W+
Sbjct  301  STSPKRLKLLCQPLLSQLERKKSDKSAPVLREAVLSSYCNLLYYAFRPGASHEQLDLYWD  360

Query  506  EYV  508
            E V
Sbjct  361  EVV  363



Lambda      K        H        a         alpha
   0.313    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2143730372


Query= TCONS_00035032

Length=1788
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463499 pfam12231, Rif1_N, Rap1-interacting factor 1 N termina...  547     0.0  


>CDD:463499 pfam12231, Rif1_N, Rap1-interacting factor 1 N terminal.  This 
domain family is found in eukaryotes, and is typically between 
135 and 146 amino acids in length. Rif1 is a protein which 
interacts with Rap1 to regulate telomere length. Interaction 
with telomeres limits their length. The N terminal region 
contains many HEAT- and ARMADILLO- type repeats. These are 
helical folds which form extended curved proteins or RNA interface 
surfaces.
Length=363

 Score = 547 bits (1411),  Expect = 0.0, Method: Composition-based stats.
 Identities = 161/363 (44%), Positives = 243/363 (67%), Gaps = 0/363 (0%)

Query  146  AYMQFFGALRAYEGLPSEQELGQKLGLISQFIQRDLSTDLGDDVPLGTNLVIQALKLAAA  205
            AYM    AL+AY+ LP    L  K+ L+ QFIQRD+S+   +  PL ++LVIQALKL   
Sbjct  1    AYMMLSRALKAYDNLPDRDALQDKMSLLCQFIQRDISSANSETGPLDSSLVIQALKLLGT  60

Query  206  LSWNIEIAAHLPDEFKVFLVEHSINALESAKAPKSVLTHYMSILSTQNFHSKIMTNARII  265
              WN  IA+ L D+F VF+++HSI +LE    PK + TH + +LS QNF  KIMT+ R+ 
Sbjct  61   FLWNPAIASTLSDDFGVFIIDHSIRSLEDPSTPKDIATHLLWVLSQQNFPPKIMTSDRVG  120

Query  266  RLLTVLGDITSRVNGNAIVFQRLSIYQRLLTQSKSIFVSQSGLWVEHLLSGLLHHVKDTR  325
            RLLT L +I  RV G +I+ +RL+IY+RLL Q+  +  + + LW+  L +G+L  VKD R
Sbjct  121  RLLTALHNIEERVKGKSIIMERLNIYRRLLEQAPQLMAAHADLWLPDLFTGMLSSVKDIR  180

Query  326  IKAISLGFQTSMICGPNPSLSKSIRDLFDRPLDNGRKLVSEICERMSRMMANVESGVHVP  385
             +AISLG + ++  GP   +S+++ +L DR L++G+  +    ER+ +M+ + ++ VHVP
Sbjct  181  ERAISLGLEAALALGPEKEVSRAVLELLDRELEDGKTYIEYYIERLQKMLKDKDNAVHVP  240

Query  386  QVWSIIVLLLRSKRLSIDQWEHFKEWVLVLQRCFNCSESSIKAQAILGWNRFVYVVSPSD  445
            Q+WS+++LLLR KR S++ WEHF EW+ ++Q+CFN S+   K +A + WNR +Y ++P +
Sbjct  241  QIWSVVILLLRKKRHSLESWEHFNEWLKLIQKCFNSSDPLTKIEANIAWNRLIYALNPDE  300

Query  446  TTSRSMLRMLSKPIMSQFERKKQERHGSQPGQLALCSYHNLLYYAFRPSATLQHLDIVWE  505
            +TS   L++L +P++SQ ERKK ++      +  L SY NLLYYAFRP A+ + LD+ W+
Sbjct  301  STSPKRLKLLCQPLLSQLERKKSDKSAPVLREAVLSSYCNLLYYAFRPGASHEQLDLYWD  360

Query  506  EYV  508
            E V
Sbjct  361  EVV  363



Lambda      K        H        a         alpha
   0.314    0.128    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 2257402912


Query= TCONS_00030529

Length=1788
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463499 pfam12231, Rif1_N, Rap1-interacting factor 1 N termina...  547     0.0  


>CDD:463499 pfam12231, Rif1_N, Rap1-interacting factor 1 N terminal.  This 
domain family is found in eukaryotes, and is typically between 
135 and 146 amino acids in length. Rif1 is a protein which 
interacts with Rap1 to regulate telomere length. Interaction 
with telomeres limits their length. The N terminal region 
contains many HEAT- and ARMADILLO- type repeats. These are 
helical folds which form extended curved proteins or RNA interface 
surfaces.
Length=363

 Score = 547 bits (1411),  Expect = 0.0, Method: Composition-based stats.
 Identities = 161/363 (44%), Positives = 243/363 (67%), Gaps = 0/363 (0%)

Query  146  AYMQFFGALRAYEGLPSEQELGQKLGLISQFIQRDLSTDLGDDVPLGTNLVIQALKLAAA  205
            AYM    AL+AY+ LP    L  K+ L+ QFIQRD+S+   +  PL ++LVIQALKL   
Sbjct  1    AYMMLSRALKAYDNLPDRDALQDKMSLLCQFIQRDISSANSETGPLDSSLVIQALKLLGT  60

Query  206  LSWNIEIAAHLPDEFKVFLVEHSINALESAKAPKSVLTHYMSILSTQNFHSKIMTNARII  265
              WN  IA+ L D+F VF+++HSI +LE    PK + TH + +LS QNF  KIMT+ R+ 
Sbjct  61   FLWNPAIASTLSDDFGVFIIDHSIRSLEDPSTPKDIATHLLWVLSQQNFPPKIMTSDRVG  120

Query  266  RLLTVLGDITSRVNGNAIVFQRLSIYQRLLTQSKSIFVSQSGLWVEHLLSGLLHHVKDTR  325
            RLLT L +I  RV G +I+ +RL+IY+RLL Q+  +  + + LW+  L +G+L  VKD R
Sbjct  121  RLLTALHNIEERVKGKSIIMERLNIYRRLLEQAPQLMAAHADLWLPDLFTGMLSSVKDIR  180

Query  326  IKAISLGFQTSMICGPNPSLSKSIRDLFDRPLDNGRKLVSEICERMSRMMANVESGVHVP  385
             +AISLG + ++  GP   +S+++ +L DR L++G+  +    ER+ +M+ + ++ VHVP
Sbjct  181  ERAISLGLEAALALGPEKEVSRAVLELLDRELEDGKTYIEYYIERLQKMLKDKDNAVHVP  240

Query  386  QVWSIIVLLLRSKRLSIDQWEHFKEWVLVLQRCFNCSESSIKAQAILGWNRFVYVVSPSD  445
            Q+WS+++LLLR KR S++ WEHF EW+ ++Q+CFN S+   K +A + WNR +Y ++P +
Sbjct  241  QIWSVVILLLRKKRHSLESWEHFNEWLKLIQKCFNSSDPLTKIEANIAWNRLIYALNPDE  300

Query  446  TTSRSMLRMLSKPIMSQFERKKQERHGSQPGQLALCSYHNLLYYAFRPSATLQHLDIVWE  505
            +TS   L++L +P++SQ ERKK ++      +  L SY NLLYYAFRP A+ + LD+ W+
Sbjct  301  STSPKRLKLLCQPLLSQLERKKSDKSAPVLREAVLSSYCNLLYYAFRPGASHEQLDLYWD  360

Query  506  EYV  508
            E V
Sbjct  361  EVV  363



Lambda      K        H        a         alpha
   0.314    0.128    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2257402912


Query= TCONS_00030531

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.145    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00030533

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.147    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00030532

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   62.0    8e-14


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 62.0 bits (151),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query  117  CSICMEQLRDDEDVRPLPCEHIFHPECVDPWLTRYHTSCPLCR  159
            C IC+E+  + + V  LPC H FH EC+D WL R   +CPLCR
Sbjct  3    CPICLEEFEEGDKVVVLPCGHHFHRECLDKWL-RSSNTCPLCR  44



Lambda      K        H        a         alpha
   0.327    0.143    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00035034

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   61.7    7e-14


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 61.7 bits (150),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query  96   CSICMEQLRDDEDVRPLPCEHIFHPECVDPWLTRYHTSCPLCR  138
            C IC+E+  + + V  LPC H FH EC+D WL R   +CPLCR
Sbjct  3    CPICLEEFEEGDKVVVLPCGHHFHRECLDKWL-RSSNTCPLCR  44



Lambda      K        H        a         alpha
   0.327    0.143    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00030535

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              132     2e-34
CDD:366028 pfam00324, AA_permease, Amino acid permease                72.4    5e-14


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 132 bits (335),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 102/428 (24%), Positives = 190/428 (44%), Gaps = 17/428 (4%)

Query  57   TGGTIVAALQDGGPMAILYGLILVSVFYTLISASLSELASSMPSAGGVYYWASVSNQEYG  116
            +G  +   +  GGP  I++G I   +F   +    +EL+S++P +GG+Y +   +   +G
Sbjct  17   SGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGGIYVYLENA---FG  73

Query  117  RFVGFLTGYLNACAWLLSAASISSMLGNEVVVMYMLLNPGSQWHSWQVFIVFQLLAWICC  176
            +FV FL G+ N  A++L  AS +S+  + ++     L P     +W  + +   +  I  
Sbjct  74   KFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPDLVPTTWLTYGIAIAILIIFA  130

Query  177  AVVCFGNRFIPRLNRFALVLSMCGLLVTIIVLTVMPRKHASNTEVWRRYHNNTGGWSDGV  236
             +   G R   ++     +L +   L+ II+L ++         +   +H        GV
Sbjct  131  IINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFNLLSGEWHTFFPDGWPGV  190

Query  237  CFLIGLINPAFSVGVPDCITHLSEEVMKPQIRVPQGTMLQMLTAFVTTFVYLIALFYSIE  296
                G +   +S    +   ++SEEV   +  VP+   + ++   V   +  IA F  + 
Sbjct  191  --FAGFLGVLWSFTGFESAANVSEEV--KKRNVPKAIFIGVIIVGVLYILVNIAFFGVVP  246

Query  297  NLDTVLHSEFSSFPTAEIYRQATGSRQGAVGLVAVLFVTAFPTLVGVYITGGRMWWSLAR  356
            + +  L S       A +  QA G + GA+ +V +L ++    +    +   R+ ++LAR
Sbjct  247  DDEIALSSGLGQV--AALLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALAR  304

Query  357  DKATPFASYFSNVHPTQKNPVRATVAMAGMVSFLGCIYISSTTAFQALLSSYVVLSTLSY  416
            D   PF+ +F+ V+    +P+RA +  A +   L  +++ S  A+ ALLS       LSY
Sbjct  305  DGVLPFSRFFAKVNKF-GSPIRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSY  363

Query  417  LGAILPHVLTGRKTIVPGPFYMGRKTGLVVNGLAVVYILVTIVLFCFPITLPVTVHNMNY  476
            L   +  +L  RK     P          V    +++ L  IV   FP   P T  ++NY
Sbjct  364  L-LPIIGLLILRKK---RPDLGRIPGRWPVAIFGILFSLFLIVALFFPPVGPATGSSLNY  419

Query  477  SSVIAVGL  484
            + ++ V  
Sbjct  420  AIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 72.4 bits (178),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 89/456 (20%), Positives = 168/456 (37%), Gaps = 48/456 (11%)

Query  64   ALQDGGPMAILYGLILVSVFYTLISASLSELASSMPSAGGVYYWASVSNQEYGRFVGFLT  123
             L   GP   L G ++  V   L+  SL E++++ P +GG Y +AS      G  +GF T
Sbjct  22   VLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASRF---LGPSLGFAT  78

Query  124  GYLNACAWLLSAASISSMLGNEVVV-MYMLLNPGSQWHSWQVFIVFQLLAWICCAVVCFG  182
            G+    +W+   A        E+     ++           +++   +   +   +   G
Sbjct  79   GWNYWLSWITVLA-------LELTAASILIQFWELVPDIPYLWVWGAVFLVLLTIINLVG  131

Query  183  NRFIPRLNRFALVLSMCGLLVTIIVLTVMPRKHASNTEVWRRY-------HNNTGGWSDG  235
             ++      +  ++ +  ++  IIV  ++      N     RY       +N   G+  G
Sbjct  132  VKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGFGKG  191

Query  236  VCFLIGLINPAFSVGVPDCITHLSEEVMKPQIRVPQGTMLQMLTAFVTTFVYLIALF---  292
              F+   +   F+    + +   + EV  P+  +P+  +  +      T  Y+++L    
Sbjct  192  --FISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWR---ITIFYILSLLAIG  246

Query  293  ----YSIENLDTVLHSEFSSFPTAEIYRQATGSRQGAVGLVAVLFVTAFPTLVGVYITGG  348
                ++   L     S  S F    I+ +  G    A  + AV+   A         +G 
Sbjct  247  LLVPWNDPGLLNDSASAASPF---VIFFKFLGISGLAPLINAVILTAALSAANSSLYSGS  303

Query  349  RMWWSLARDKATPFASYFSNVHPTQKNPVRA-TVAMA-GMVSFLGCIYISSTTAFQALLS  406
            RM +SLARD   P    F      +  P+RA  V+M   +++ L    ++    F  LL+
Sbjct  304  RMLYSLARDGLAPK---FLKKVDKRGVPLRAILVSMVISLLALL-LASLNPAIVFNFLLA  359

Query  407  SYVVLSTLSYLGAILPHVLTGRKTIVPG------PFYMGRKTGLVVNGLAVVYILVTIVL  460
               +   + +    L H+   +     G      PF        V+ GLA + I++ I  
Sbjct  360  ISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILIIQF  419

Query  461  FCFPITLPVTVHNMNYSSVIAVGLVTLTALWWVVRG  496
                + +P    N    S  A     L  L +++  
Sbjct  420  LYAFLPVPGGPKNWGAGSFAAAY---LIVLLFLIIL  452



Lambda      K        H        a         alpha
   0.325    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 664674974


Query= TCONS_00030534

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              132     2e-34
CDD:366028 pfam00324, AA_permease, Amino acid permease                72.4    5e-14


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 132 bits (335),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 102/428 (24%), Positives = 190/428 (44%), Gaps = 17/428 (4%)

Query  57   TGGTIVAALQDGGPMAILYGLILVSVFYTLISASLSELASSMPSAGGVYYWASVSNQEYG  116
            +G  +   +  GGP  I++G I   +F   +    +EL+S++P +GG+Y +   +   +G
Sbjct  17   SGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGGIYVYLENA---FG  73

Query  117  RFVGFLTGYLNACAWLLSAASISSMLGNEVVVMYMLLNPGSQWHSWQVFIVFQLLAWICC  176
            +FV FL G+ N  A++L  AS +S+  + ++     L P     +W  + +   +  I  
Sbjct  74   KFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPDLVPTTWLTYGIAIAILIIFA  130

Query  177  AVVCFGNRFIPRLNRFALVLSMCGLLVTIIVLTVMPRKHASNTEVWRRYHNNTGGWSDGV  236
             +   G R   ++     +L +   L+ II+L ++         +   +H        GV
Sbjct  131  IINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFNLLSGEWHTFFPDGWPGV  190

Query  237  CFLIGLINPAFSVGVPDCITHLSEEVMKPQIRVPQGTMLQMLTAFVTTFVYLIALFYSIE  296
                G +   +S    +   ++SEEV   +  VP+   + ++   V   +  IA F  + 
Sbjct  191  --FAGFLGVLWSFTGFESAANVSEEV--KKRNVPKAIFIGVIIVGVLYILVNIAFFGVVP  246

Query  297  NLDTVLHSEFSSFPTAEIYRQATGSRQGAVGLVAVLFVTAFPTLVGVYITGGRMWWSLAR  356
            + +  L S       A +  QA G + GA+ +V +L ++    +    +   R+ ++LAR
Sbjct  247  DDEIALSSGLGQV--AALLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALAR  304

Query  357  DKATPFASYFSNVHPTQKNPVRATVAMAGMVSFLGCIYISSTTAFQALLSSYVVLSTLSY  416
            D   PF+ +F+ V+    +P+RA +  A +   L  +++ S  A+ ALLS       LSY
Sbjct  305  DGVLPFSRFFAKVNKF-GSPIRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSY  363

Query  417  LGAILPHVLTGRKTIVPGPFYMGRKTGLVVNGLAVVYILVTIVLFCFPITLPVTVHNMNY  476
            L   +  +L  RK     P          V    +++ L  IV   FP   P T  ++NY
Sbjct  364  L-LPIIGLLILRKK---RPDLGRIPGRWPVAIFGILFSLFLIVALFFPPVGPATGSSLNY  419

Query  477  SSVIAVGL  484
            + ++ V  
Sbjct  420  AIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 72.4 bits (178),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 89/456 (20%), Positives = 168/456 (37%), Gaps = 48/456 (11%)

Query  64   ALQDGGPMAILYGLILVSVFYTLISASLSELASSMPSAGGVYYWASVSNQEYGRFVGFLT  123
             L   GP   L G ++  V   L+  SL E++++ P +GG Y +AS      G  +GF T
Sbjct  22   VLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASRF---LGPSLGFAT  78

Query  124  GYLNACAWLLSAASISSMLGNEVVV-MYMLLNPGSQWHSWQVFIVFQLLAWICCAVVCFG  182
            G+    +W+   A        E+     ++           +++   +   +   +   G
Sbjct  79   GWNYWLSWITVLA-------LELTAASILIQFWELVPDIPYLWVWGAVFLVLLTIINLVG  131

Query  183  NRFIPRLNRFALVLSMCGLLVTIIVLTVMPRKHASNTEVWRRY-------HNNTGGWSDG  235
             ++      +  ++ +  ++  IIV  ++      N     RY       +N   G+  G
Sbjct  132  VKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGFGKG  191

Query  236  VCFLIGLINPAFSVGVPDCITHLSEEVMKPQIRVPQGTMLQMLTAFVTTFVYLIALF---  292
              F+   +   F+    + +   + EV  P+  +P+  +  +      T  Y+++L    
Sbjct  192  --FISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWR---ITIFYILSLLAIG  246

Query  293  ----YSIENLDTVLHSEFSSFPTAEIYRQATGSRQGAVGLVAVLFVTAFPTLVGVYITGG  348
                ++   L     S  S F    I+ +  G    A  + AV+   A         +G 
Sbjct  247  LLVPWNDPGLLNDSASAASPF---VIFFKFLGISGLAPLINAVILTAALSAANSSLYSGS  303

Query  349  RMWWSLARDKATPFASYFSNVHPTQKNPVRA-TVAMA-GMVSFLGCIYISSTTAFQALLS  406
            RM +SLARD   P    F      +  P+RA  V+M   +++ L    ++    F  LL+
Sbjct  304  RMLYSLARDGLAPK---FLKKVDKRGVPLRAILVSMVISLLALL-LASLNPAIVFNFLLA  359

Query  407  SYVVLSTLSYLGAILPHVLTGRKTIVPG------PFYMGRKTGLVVNGLAVVYILVTIVL  460
               +   + +    L H+   +     G      PF        V+ GLA + I++ I  
Sbjct  360  ISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILIIQF  419

Query  461  FCFPITLPVTVHNMNYSSVIAVGLVTLTALWWVVRG  496
                + +P    N    S  A     L  L +++  
Sbjct  420  LYAFLPVPGGPKNWGAGSFAAAY---LIVLLFLIIL  452



Lambda      K        H        a         alpha
   0.325    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 664674974


Query= TCONS_00030536

Length=173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  95.5    8e-25


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 95.5 bits (238),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 49/159 (31%), Positives = 82/159 (52%), Gaps = 8/159 (5%)

Query  6    VGVANYDRDDMIKMADELDKHGVPLAVNQCEYSVIRRHPEVHGLIRECRQRGIVFQGYAS  65
            +GV+N+D + + K    L K  +P+   Q EY+++RR  E   L+  C++ GI    Y+ 
Sbjct  135  IGVSNFDAEQIEKA---LTKGKIPIVAVQVEYNLLRRRQE-EELLEYCKKNGIPLIAYSP  190

Query  66   LGEGRLSNKYSRFHEPPRTYRFSSYPMHMLE--PTLSVLEQIAEERRVPVAAVALNFSIN  123
            LG G L+ KY+R  +     R              L  LE+IA+E  V  A VAL ++++
Sbjct  191  LGGGLLTGKYTRDPDKGPGERRRLLKKGTPLNLEALEALEEIAKEHGVSPAQVALRWALS  250

Query  124  --KGVLSLVGIRSGEQAEQDMQALGWRLTPEEMRRIESV  160
                 + + G  + EQ E ++ AL + L+ EE+ RI+ +
Sbjct  251  KPGVTIPIPGASNPEQLEDNLGALEFPLSDEEVARIDEL  289



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00030537

Length=605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            124     9e-33
CDD:459660 pfam00069, Pkinase, Protein kinase domain                  115     9e-30


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 124 bits (314),  Expect = 9e-33, Method: Composition-based stats.
 Identities = 85/317 (27%), Positives = 129/317 (41%), Gaps = 73/317 (23%)

Query  63   RILGKGGKGVVLLVKHVLDGVSLGHY---ACKRVPVGDDHEWLEKVLGEVQLLQHLSHQN  119
              LG+G  G V   K  L G         A K +  G D E  E  L E  +++ L H N
Sbjct  5    EKLGEGAFGEV--YKGTLKGEGENTKIKVAVKTLKEGADEEEREDFLEEASIMKKLDHPN  62

Query  120  LVSYRHVWLENAKISTFGPSVPCAFILQQYCNAGDLHNYICGSVQDTTTPQQLKARLRRK  179
            +V    V  +   +          +I+ +Y   GDL ++                 LR+ 
Sbjct  63   IVKLLGVCTQGEPL----------YIVTEYMPGGDLLDF-----------------LRKH  95

Query  180  SKGEPEPQVDLGGPRKLNFEQIYSFFKDITSGLRHLHVNGYIHRDLKPNNCLLHETSDGL  239
                          RKL  + + S    I  G+ +L    ++HRDL   NCL+ E    L
Sbjct  96   -------------KRKLTLKDLLSMALQIAKGMEYLESKNFVHRDLAARNCLVSE---NL  139

Query  240  RVLVSDFG---EVQAQDTTRLSTGATGTVSYCAPEVLRREYPGGPFGNFTFKSDIFSLGM  296
             V +SDFG   ++   D  R   G    + + APE L+        G FT KSD++S G+
Sbjct  140  VVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLK-------DGKFTSKSDVWSFGV  192

Query  297  ILH-FLCFAELPYRNADLIHEEKEDLDQLRAEISQWTGFDDERRLRPDL-PEKLYTFLKR  354
            +L       E PY    + +EE   L+ L          D  R  +P+  P++LY  +K+
Sbjct  193  LLWEIFTLGEQPY--PGMSNEEV--LEFLE---------DGYRLPQPENCPDELYDLMKQ  239

Query  355  LLSVDPDRRPTADEVLS  371
              + DP+ RPT  E++ 
Sbjct  240  CWAYDPEDRPTFSELVE  256


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 115 bits (289),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 102/314 (32%), Gaps = 102/314 (32%)

Query  59   FVEERILGKGGKGVVLLVKHVLDGVSLGHYACKRVPVGDDHEWLEK-VLGEVQLLQHLSH  117
            +   R LG G  G V   KH   G      A K++      +  +K +L E+++L+ L+H
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTG---KIVAIKKIKKEKIKKKKDKNILREIKILKKLNH  57

Query  118  QNLVSYRHVWLENAKISTFGPSVPCAFILQQYCNAGDLHNYICGSVQDTTTPQQLKARLR  177
             N+V     + +   +          +++ +Y   G L + +  S +   + ++ K    
Sbjct  58   PNIVRLYDAFEDKDNL----------YLVLEYVEGGSLFDLL--SEKGAFSEREAK----  101

Query  178  RKSKGEPEPQVDLGGPRKLNFEQIYSFFKDITSGLRHLHVNGYIHRDLKPNNCLLHETSD  237
                                        K I  GL                         
Sbjct  102  -------------------------FIMKQILEGLES-----------------------  113

Query  238  GLRVLVSDFGEVQAQDTTRLSTGATGTVSYCAPEVLRREYPGGPFGNFTFKSDIFSLGMI  297
                 ++ F                GT  Y APEVL           +  K D++SLG I
Sbjct  114  --GSSLTTF---------------VGTPWYMAPEVLGGN-------PYGPKVDVWSLGCI  149

Query  298  LHFLCFAELPYRNADLIHEEKEDLDQLRAEISQWTGFDDERRLRPDLPEKLYTFLKRLLS  357
            L+ L   + P+   +     +  +DQ  A                +L E+    LK+LL 
Sbjct  150  LYELLTGKPPFPGINGNEIYELIIDQPYAFPELP----------SNLSEEAKDLLKKLLK  199

Query  358  VDPDRRPTADEVLS  371
             DP +R TA + L 
Sbjct  200  KDPSKRLTATQALQ  213



Lambda      K        H        a         alpha
   0.320    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 766641564


Query= TCONS_00030538

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00030539

Length=287


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00035035

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00030540

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00030542

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-te...  226     9e-75


>CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-terminal 
domain.  This family is of proteins conserved in yeasts. It 
binds to Uba3 and is involved in the NEDD8 signalling pathway. 
This family represents a presumed C-terminal domain.
Length=138

 Score = 226 bits (579),  Expect = 9e-75, Method: Composition-based stats.
 Identities = 92/138 (67%), Positives = 110/138 (80%), Gaps = 0/138 (0%)

Query  237  FPHLIIPVDSSSPNKAPGTSFNGTVSSTVSSIFNFDIPSSDAGKTCSLVFLFPKKEDLET  296
            FPHLI+PV SSSP+KA GTS+NGTVS TVS+IFNFDIP+S AGKTCSLVFLFP +  LET
Sbjct  1    FPHLIVPVSSSSPDKAFGTSYNGTVSPTVSTIFNFDIPASYAGKTCSLVFLFPTQSQLET  60

Query  297  SSYSFSGDGKIDFAMLESAATSQTSFSNAPKVKQDYGVTTVSPGNSYLISTFQCPAGQAV  356
            SSY+FSG G   F+ L   AT  T+++N P VK+D G TTVSPGNSY I++F CPAGQ V
Sbjct  61   SSYTFSGSGNFVFSGLSGPATDSTTYNNQPAVKEDLGTTTVSPGNSYTIASFPCPAGQTV  120

Query  357  GFEMKNAGSTNLNFFEDY  374
             +EM +AG T+L FF+DY
Sbjct  121  AYEMSSAGDTSLEFFQDY  138



Lambda      K        H        a         alpha
   0.311    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00030541

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-te...  226     9e-75


>CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-terminal 
domain.  This family is of proteins conserved in yeasts. It 
binds to Uba3 and is involved in the NEDD8 signalling pathway. 
This family represents a presumed C-terminal domain.
Length=138

 Score = 226 bits (579),  Expect = 9e-75, Method: Composition-based stats.
 Identities = 92/138 (67%), Positives = 110/138 (80%), Gaps = 0/138 (0%)

Query  237  FPHLIIPVDSSSPNKAPGTSFNGTVSSTVSSIFNFDIPSSDAGKTCSLVFLFPKKEDLET  296
            FPHLI+PV SSSP+KA GTS+NGTVS TVS+IFNFDIP+S AGKTCSLVFLFP +  LET
Sbjct  1    FPHLIVPVSSSSPDKAFGTSYNGTVSPTVSTIFNFDIPASYAGKTCSLVFLFPTQSQLET  60

Query  297  SSYSFSGDGKIDFAMLESAATSQTSFSNAPKVKQDYGVTTVSPGNSYLISTFQCPAGQAV  356
            SSY+FSG G   F+ L   AT  T+++N P VK+D G TTVSPGNSY I++F CPAGQ V
Sbjct  61   SSYTFSGSGNFVFSGLSGPATDSTTYNNQPAVKEDLGTTTVSPGNSYTIASFPCPAGQTV  120

Query  357  GFEMKNAGSTNLNFFEDY  374
             +EM +AG T+L FF+DY
Sbjct  121  AYEMSSAGDTSLEFFQDY  138



Lambda      K        H        a         alpha
   0.311    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00030545

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-te...  226     9e-75


>CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-terminal 
domain.  This family is of proteins conserved in yeasts. It 
binds to Uba3 and is involved in the NEDD8 signalling pathway. 
This family represents a presumed C-terminal domain.
Length=138

 Score = 226 bits (579),  Expect = 9e-75, Method: Composition-based stats.
 Identities = 92/138 (67%), Positives = 110/138 (80%), Gaps = 0/138 (0%)

Query  237  FPHLIIPVDSSSPNKAPGTSFNGTVSSTVSSIFNFDIPSSDAGKTCSLVFLFPKKEDLET  296
            FPHLI+PV SSSP+KA GTS+NGTVS TVS+IFNFDIP+S AGKTCSLVFLFP +  LET
Sbjct  1    FPHLIVPVSSSSPDKAFGTSYNGTVSPTVSTIFNFDIPASYAGKTCSLVFLFPTQSQLET  60

Query  297  SSYSFSGDGKIDFAMLESAATSQTSFSNAPKVKQDYGVTTVSPGNSYLISTFQCPAGQAV  356
            SSY+FSG G   F+ L   AT  T+++N P VK+D G TTVSPGNSY I++F CPAGQ V
Sbjct  61   SSYTFSGSGNFVFSGLSGPATDSTTYNNQPAVKEDLGTTTVSPGNSYTIASFPCPAGQTV  120

Query  357  GFEMKNAGSTNLNFFEDY  374
             +EM +AG T+L FF+DY
Sbjct  121  AYEMSSAGDTSLEFFQDY  138



Lambda      K        H        a         alpha
   0.311    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00030544

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-te...  226     9e-75


>CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-terminal 
domain.  This family is of proteins conserved in yeasts. It 
binds to Uba3 and is involved in the NEDD8 signalling pathway. 
This family represents a presumed C-terminal domain.
Length=138

 Score = 226 bits (579),  Expect = 9e-75, Method: Composition-based stats.
 Identities = 92/138 (67%), Positives = 110/138 (80%), Gaps = 0/138 (0%)

Query  237  FPHLIIPVDSSSPNKAPGTSFNGTVSSTVSSIFNFDIPSSDAGKTCSLVFLFPKKEDLET  296
            FPHLI+PV SSSP+KA GTS+NGTVS TVS+IFNFDIP+S AGKTCSLVFLFP +  LET
Sbjct  1    FPHLIVPVSSSSPDKAFGTSYNGTVSPTVSTIFNFDIPASYAGKTCSLVFLFPTQSQLET  60

Query  297  SSYSFSGDGKIDFAMLESAATSQTSFSNAPKVKQDYGVTTVSPGNSYLISTFQCPAGQAV  356
            SSY+FSG G   F+ L   AT  T+++N P VK+D G TTVSPGNSY I++F CPAGQ V
Sbjct  61   SSYTFSGSGNFVFSGLSGPATDSTTYNNQPAVKEDLGTTTVSPGNSYTIASFPCPAGQTV  120

Query  357  GFEMKNAGSTNLNFFEDY  374
             +EM +AG T+L FF+DY
Sbjct  121  AYEMSSAGDTSLEFFQDY  138



Lambda      K        H        a         alpha
   0.311    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00030546

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00030543

Length=184
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-te...  215     2e-73


>CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-terminal 
domain.  This family is of proteins conserved in yeasts. It 
binds to Uba3 and is involved in the NEDD8 signalling pathway. 
This family represents a presumed C-terminal domain.
Length=138

 Score = 215 bits (551),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 92/138 (67%), Positives = 110/138 (80%), Gaps = 0/138 (0%)

Query  43   FPHLIIPVDSSSPNKAPGTSFNGTVSSTVSSIFNFDIPSSDAGKTCSLVFLFPKKEDLET  102
            FPHLI+PV SSSP+KA GTS+NGTVS TVS+IFNFDIP+S AGKTCSLVFLFP +  LET
Sbjct  1    FPHLIVPVSSSSPDKAFGTSYNGTVSPTVSTIFNFDIPASYAGKTCSLVFLFPTQSQLET  60

Query  103  SSYSFSGDGKIDFAMLESAATSQTSFSNAPKVKQDYGVTTVSPGNSYLISTFQCPAGQAV  162
            SSY+FSG G   F+ L   AT  T+++N P VK+D G TTVSPGNSY I++F CPAGQ V
Sbjct  61   SSYTFSGSGNFVFSGLSGPATDSTTYNNQPAVKEDLGTTTVSPGNSYTIASFPCPAGQTV  120

Query  163  GFEMKNAGSTNLNFFEDY  180
             +EM +AG T+L FF+DY
Sbjct  121  AYEMSSAGDTSLEFFQDY  138



Lambda      K        H        a         alpha
   0.309    0.125    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00035036

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-te...  226     9e-75


>CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-terminal 
domain.  This family is of proteins conserved in yeasts. It 
binds to Uba3 and is involved in the NEDD8 signalling pathway. 
This family represents a presumed C-terminal domain.
Length=138

 Score = 226 bits (579),  Expect = 9e-75, Method: Composition-based stats.
 Identities = 92/138 (67%), Positives = 110/138 (80%), Gaps = 0/138 (0%)

Query  237  FPHLIIPVDSSSPNKAPGTSFNGTVSSTVSSIFNFDIPSSDAGKTCSLVFLFPKKEDLET  296
            FPHLI+PV SSSP+KA GTS+NGTVS TVS+IFNFDIP+S AGKTCSLVFLFP +  LET
Sbjct  1    FPHLIVPVSSSSPDKAFGTSYNGTVSPTVSTIFNFDIPASYAGKTCSLVFLFPTQSQLET  60

Query  297  SSYSFSGDGKIDFAMLESAATSQTSFSNAPKVKQDYGVTTVSPGNSYLISTFQCPAGQAV  356
            SSY+FSG G   F+ L   AT  T+++N P VK+D G TTVSPGNSY I++F CPAGQ V
Sbjct  61   SSYTFSGSGNFVFSGLSGPATDSTTYNNQPAVKEDLGTTTVSPGNSYTIASFPCPAGQTV  120

Query  357  GFEMKNAGSTNLNFFEDY  374
             +EM +AG T+L FF+DY
Sbjct  121  AYEMSSAGDTSLEFFQDY  138



Lambda      K        H        a         alpha
   0.311    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00030548

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-te...  218     3e-74


>CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-terminal 
domain.  This family is of proteins conserved in yeasts. It 
binds to Uba3 and is involved in the NEDD8 signalling pathway. 
This family represents a presumed C-terminal domain.
Length=138

 Score = 218 bits (557),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 92/138 (67%), Positives = 110/138 (80%), Gaps = 0/138 (0%)

Query  43   FPHLIIPVDSSSPNKAPGTSFNGTVSSTVSSIFNFDIPSSDAGKTCSLVFLFPKKEDLET  102
            FPHLI+PV SSSP+KA GTS+NGTVS TVS+IFNFDIP+S AGKTCSLVFLFP +  LET
Sbjct  1    FPHLIVPVSSSSPDKAFGTSYNGTVSPTVSTIFNFDIPASYAGKTCSLVFLFPTQSQLET  60

Query  103  SSYSFSGDGKIDFAMLESAATSQTSFSNAPKVKQDYGVTTVSPGNSYLISTFQCPAGQAV  162
            SSY+FSG G   F+ L   AT  T+++N P VK+D G TTVSPGNSY I++F CPAGQ V
Sbjct  61   SSYTFSGSGNFVFSGLSGPATDSTTYNNQPAVKEDLGTTTVSPGNSYTIASFPCPAGQTV  120

Query  163  GFEMKNAGSTNLNFFEDY  180
             +EM +AG T+L FF+DY
Sbjct  121  AYEMSSAGDTSLEFFQDY  138



Lambda      K        H        a         alpha
   0.311    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00030547

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-te...  218     3e-74


>CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-terminal 
domain.  This family is of proteins conserved in yeasts. It 
binds to Uba3 and is involved in the NEDD8 signalling pathway. 
This family represents a presumed C-terminal domain.
Length=138

 Score = 218 bits (557),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 92/138 (67%), Positives = 110/138 (80%), Gaps = 0/138 (0%)

Query  43   FPHLIIPVDSSSPNKAPGTSFNGTVSSTVSSIFNFDIPSSDAGKTCSLVFLFPKKEDLET  102
            FPHLI+PV SSSP+KA GTS+NGTVS TVS+IFNFDIP+S AGKTCSLVFLFP +  LET
Sbjct  1    FPHLIVPVSSSSPDKAFGTSYNGTVSPTVSTIFNFDIPASYAGKTCSLVFLFPTQSQLET  60

Query  103  SSYSFSGDGKIDFAMLESAATSQTSFSNAPKVKQDYGVTTVSPGNSYLISTFQCPAGQAV  162
            SSY+FSG G   F+ L   AT  T+++N P VK+D G TTVSPGNSY I++F CPAGQ V
Sbjct  61   SSYTFSGSGNFVFSGLSGPATDSTTYNNQPAVKEDLGTTTVSPGNSYTIASFPCPAGQTV  120

Query  163  GFEMKNAGSTNLNFFEDY  180
             +EM +AG T+L FF+DY
Sbjct  121  AYEMSSAGDTSLEFFQDY  138



Lambda      K        H        a         alpha
   0.311    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00035037

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-te...  218     3e-74


>CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-terminal 
domain.  This family is of proteins conserved in yeasts. It 
binds to Uba3 and is involved in the NEDD8 signalling pathway. 
This family represents a presumed C-terminal domain.
Length=138

 Score = 218 bits (557),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 92/138 (67%), Positives = 110/138 (80%), Gaps = 0/138 (0%)

Query  43   FPHLIIPVDSSSPNKAPGTSFNGTVSSTVSSIFNFDIPSSDAGKTCSLVFLFPKKEDLET  102
            FPHLI+PV SSSP+KA GTS+NGTVS TVS+IFNFDIP+S AGKTCSLVFLFP +  LET
Sbjct  1    FPHLIVPVSSSSPDKAFGTSYNGTVSPTVSTIFNFDIPASYAGKTCSLVFLFPTQSQLET  60

Query  103  SSYSFSGDGKIDFAMLESAATSQTSFSNAPKVKQDYGVTTVSPGNSYLISTFQCPAGQAV  162
            SSY+FSG G   F+ L   AT  T+++N P VK+D G TTVSPGNSY I++F CPAGQ V
Sbjct  61   SSYTFSGSGNFVFSGLSGPATDSTTYNNQPAVKEDLGTTTVSPGNSYTIASFPCPAGQTV  120

Query  163  GFEMKNAGSTNLNFFEDY  180
             +EM +AG T+L FF+DY
Sbjct  121  AYEMSSAGDTSLEFFQDY  138



Lambda      K        H        a         alpha
   0.311    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00035038

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-te...  226     9e-75


>CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-terminal 
domain.  This family is of proteins conserved in yeasts. It 
binds to Uba3 and is involved in the NEDD8 signalling pathway. 
This family represents a presumed C-terminal domain.
Length=138

 Score = 226 bits (579),  Expect = 9e-75, Method: Composition-based stats.
 Identities = 92/138 (67%), Positives = 110/138 (80%), Gaps = 0/138 (0%)

Query  237  FPHLIIPVDSSSPNKAPGTSFNGTVSSTVSSIFNFDIPSSDAGKTCSLVFLFPKKEDLET  296
            FPHLI+PV SSSP+KA GTS+NGTVS TVS+IFNFDIP+S AGKTCSLVFLFP +  LET
Sbjct  1    FPHLIVPVSSSSPDKAFGTSYNGTVSPTVSTIFNFDIPASYAGKTCSLVFLFPTQSQLET  60

Query  297  SSYSFSGDGKIDFAMLESAATSQTSFSNAPKVKQDYGVTTVSPGNSYLISTFQCPAGQAV  356
            SSY+FSG G   F+ L   AT  T+++N P VK+D G TTVSPGNSY I++F CPAGQ V
Sbjct  61   SSYTFSGSGNFVFSGLSGPATDSTTYNNQPAVKEDLGTTTVSPGNSYTIASFPCPAGQTV  120

Query  357  GFEMKNAGSTNLNFFEDY  374
             +EM +AG T+L FF+DY
Sbjct  121  AYEMSSAGDTSLEFFQDY  138



Lambda      K        H        a         alpha
   0.311    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00035039

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-te...  218     3e-74


>CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-terminal 
domain.  This family is of proteins conserved in yeasts. It 
binds to Uba3 and is involved in the NEDD8 signalling pathway. 
This family represents a presumed C-terminal domain.
Length=138

 Score = 218 bits (557),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 92/138 (67%), Positives = 110/138 (80%), Gaps = 0/138 (0%)

Query  43   FPHLIIPVDSSSPNKAPGTSFNGTVSSTVSSIFNFDIPSSDAGKTCSLVFLFPKKEDLET  102
            FPHLI+PV SSSP+KA GTS+NGTVS TVS+IFNFDIP+S AGKTCSLVFLFP +  LET
Sbjct  1    FPHLIVPVSSSSPDKAFGTSYNGTVSPTVSTIFNFDIPASYAGKTCSLVFLFPTQSQLET  60

Query  103  SSYSFSGDGKIDFAMLESAATSQTSFSNAPKVKQDYGVTTVSPGNSYLISTFQCPAGQAV  162
            SSY+FSG G   F+ L   AT  T+++N P VK+D G TTVSPGNSY I++F CPAGQ V
Sbjct  61   SSYTFSGSGNFVFSGLSGPATDSTTYNNQPAVKEDLGTTTVSPGNSYTIASFPCPAGQTV  120

Query  163  GFEMKNAGSTNLNFFEDY  180
             +EM +AG T+L FF+DY
Sbjct  121  AYEMSSAGDTSLEFFQDY  138



Lambda      K        H        a         alpha
   0.311    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00030549

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-te...  218     3e-74


>CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-terminal 
domain.  This family is of proteins conserved in yeasts. It 
binds to Uba3 and is involved in the NEDD8 signalling pathway. 
This family represents a presumed C-terminal domain.
Length=138

 Score = 218 bits (557),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 92/138 (67%), Positives = 110/138 (80%), Gaps = 0/138 (0%)

Query  43   FPHLIIPVDSSSPNKAPGTSFNGTVSSTVSSIFNFDIPSSDAGKTCSLVFLFPKKEDLET  102
            FPHLI+PV SSSP+KA GTS+NGTVS TVS+IFNFDIP+S AGKTCSLVFLFP +  LET
Sbjct  1    FPHLIVPVSSSSPDKAFGTSYNGTVSPTVSTIFNFDIPASYAGKTCSLVFLFPTQSQLET  60

Query  103  SSYSFSGDGKIDFAMLESAATSQTSFSNAPKVKQDYGVTTVSPGNSYLISTFQCPAGQAV  162
            SSY+FSG G   F+ L   AT  T+++N P VK+D G TTVSPGNSY I++F CPAGQ V
Sbjct  61   SSYTFSGSGNFVFSGLSGPATDSTTYNNQPAVKEDLGTTTVSPGNSYTIASFPCPAGQTV  120

Query  163  GFEMKNAGSTNLNFFEDY  180
             +EM +AG T+L FF+DY
Sbjct  121  AYEMSSAGDTSLEFFQDY  138



Lambda      K        H        a         alpha
   0.311    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00030550

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-te...  225     2e-74


>CDD:430830 pfam09792, But2, Ubiquitin 3 binding protein But2 C-terminal 
domain.  This family is of proteins conserved in yeasts. It 
binds to Uba3 and is involved in the NEDD8 signalling pathway. 
This family represents a presumed C-terminal domain.
Length=138

 Score = 225 bits (577),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 92/138 (67%), Positives = 110/138 (80%), Gaps = 0/138 (0%)

Query  237  FPHLIIPVDSSSPNKAPGTSFNGTVSSTVSSIFNFDIPSSDAGKTCSLVFLFPKKEDLET  296
            FPHLI+PV SSSP+KA GTS+NGTVS TVS+IFNFDIP+S AGKTCSLVFLFP +  LET
Sbjct  1    FPHLIVPVSSSSPDKAFGTSYNGTVSPTVSTIFNFDIPASYAGKTCSLVFLFPTQSQLET  60

Query  297  SSYSFSGDGKIDFAMLESAATSQTSFSNAPKVKQDYGVTTVSPGNSYLISTFQCPAGQAV  356
            SSY+FSG G   F+ L   AT  T+++N P VK+D G TTVSPGNSY I++F CPAGQ V
Sbjct  61   SSYTFSGSGNFVFSGLSGPATDSTTYNNQPAVKEDLGTTTVSPGNSYTIASFPCPAGQTV  120

Query  357  GFEMKNAGSTNLNFFEDY  374
             +EM +AG T+L FF+DY
Sbjct  121  AYEMSSAGDTSLEFFQDY  138



Lambda      K        H        a         alpha
   0.311    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00030551

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426329 pfam01569, PAP2, PAP2 superfamily. This family include...  80.2    8e-19


>CDD:426329 pfam01569, PAP2, PAP2 superfamily.  This family includes the 
enzyme type 2 phosphatidic acid phosphatase (PAP2), Glucose-6-phosphatase 
EC:3.1.3.9, Phosphatidylglycerophosphatase B EC:3.1.3.27 
and bacterial acid phosphatase EC:3.1.3.2. The family 
also includes a variety of haloperoxidases that function 
by oxidising halides in the presence of hydrogen peroxide 
to form the corresponding hypohalous acids.
Length=124

 Score = 80.2 bits (198),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 64/143 (45%), Gaps = 23/143 (16%)

Query  130  LLLSQGLAFLITQVLKTACGKPRPDLIDRCKPRPGSEDLIPGLSNSTICTGDPAIIKDGF  189
            LLL+  LA L++ VLK   G+PRP  +                         P+ +    
Sbjct  2    LLLALALAGLLSSVLKDYFGRPRPFFLLLEGG----------------LVPAPSTLPGLG  45

Query  190  RSWPS--ASFAGLFYLTLWLCGKLHFMDNRGEVWKAIIVIIPCLAATLIAVSRIMDARHH  247
             S+PS  ++ A    L L L      +    ++ + ++ ++  + A L+ +SR+    H 
Sbjct  46   YSFPSGHSATAFALALLLAL-----LLRRLRKIVRVLLALLLLVLALLVGLSRLYLGVHF  100

Query  248  PFDVISGSLLGIICAYISYRQYF  270
            P DV++G+L+GI+ A + YR   
Sbjct  101  PSDVLAGALIGILLALLVYRLVP  123



Lambda      K        H        a         alpha
   0.322    0.139    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00030553

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426329 pfam01569, PAP2, PAP2 superfamily. This family include...  65.9    1e-13


>CDD:426329 pfam01569, PAP2, PAP2 superfamily.  This family includes the 
enzyme type 2 phosphatidic acid phosphatase (PAP2), Glucose-6-phosphatase 
EC:3.1.3.9, Phosphatidylglycerophosphatase B EC:3.1.3.27 
and bacterial acid phosphatase EC:3.1.3.2. The family 
also includes a variety of haloperoxidases that function 
by oxidising halides in the presence of hydrogen peroxide 
to form the corresponding hypohalous acids.
Length=124

 Score = 65.9 bits (161),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 33/150 (22%)

Query  130  LLLSQGLAFLITQVLKTACGKPRPDLIDRCKPRPGSEDLIPGLSNS-----TICTGDPAI  184
            LLL+  LA L++ VLK   G+PRP  +        +   +PGL  S     +        
Sbjct  2    LLLALALAGLLSSVLKDYFGRPRPFFLLLEGGLVPAPSTLPGLGYSFPSGHSA-------  54

Query  185  IKDGFRSWPSGHSSSSFAGLFYLTLWLCGKLHFMDNRGEVWKAIIVIIPCLAATLIAVSR  244
                             A    L L L      +    ++ + ++ ++  + A L+ +SR
Sbjct  55   ----------------TAFALALLLAL-----LLRRLRKIVRVLLALLLLVLALLVGLSR  93

Query  245  IMDARHHPFDVISGSLLGIICAYISYRQYF  274
            +    H P DV++G+L+GI+ A + YR   
Sbjct  94   LYLGVHFPSDVLAGALIGILLALLVYRLVP  123



Lambda      K        H        a         alpha
   0.322    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00030552

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426329 pfam01569, PAP2, PAP2 superfamily. This family include...  65.9    1e-13


>CDD:426329 pfam01569, PAP2, PAP2 superfamily.  This family includes the 
enzyme type 2 phosphatidic acid phosphatase (PAP2), Glucose-6-phosphatase 
EC:3.1.3.9, Phosphatidylglycerophosphatase B EC:3.1.3.27 
and bacterial acid phosphatase EC:3.1.3.2. The family 
also includes a variety of haloperoxidases that function 
by oxidising halides in the presence of hydrogen peroxide 
to form the corresponding hypohalous acids.
Length=124

 Score = 65.9 bits (161),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 33/150 (22%)

Query  130  LLLSQGLAFLITQVLKTACGKPRPDLIDRCKPRPGSEDLIPGLSNS-----TICTGDPAI  184
            LLL+  LA L++ VLK   G+PRP  +        +   +PGL  S     +        
Sbjct  2    LLLALALAGLLSSVLKDYFGRPRPFFLLLEGGLVPAPSTLPGLGYSFPSGHSA-------  54

Query  185  IKDGFRSWPSGHSSSSFAGLFYLTLWLCGKLHFMDNRGEVWKAIIVIIPCLAATLIAVSR  244
                             A    L L L      +    ++ + ++ ++  + A L+ +SR
Sbjct  55   ----------------TAFALALLLAL-----LLRRLRKIVRVLLALLLLVLALLVGLSR  93

Query  245  IMDARHHPFDVISGSLLGIICAYISYRQYF  274
            +    H P DV++G+L+GI+ A + YR   
Sbjct  94   LYLGVHFPSDVLAGALIGILLALLVYRLVP  123



Lambda      K        H        a         alpha
   0.322    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00030554

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00035040

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00030555

Length=843
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:281474 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain....  107     4e-28
CDD:425567 pfam00266, Aminotran_5, Aminotransferase class-V. This...  101     1e-23


>CDD:281474 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain.  This 
domain is found to the N-terminus of pfam03473. The function 
of this domain is unknown, however it is predicted to adopt 
a beta barrel fold.
Length=118

 Score = 107 bits (269),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 41/138 (30%), Positives = 59/138 (43%), Gaps = 21/138 (15%)

Query  494  FYIESLSLYPIKSCGPFKVPDGRRWEIRREGLAWDREWCLIHQGTGAALNQKKYPRMALI  553
              + SL +YPIKSC    +      E+   GLAWDR + ++    G  +  ++ PR+ LI
Sbjct  2    ARVSSLYVYPIKSCRGESLSRA---ELTAAGLAWDRRFMVVD-SDGKFVTARREPRLVLI  57

Query  554  RPSIDLDRNVLRVTCGEPGSTDQKLLEVSLLRENTELATTSLCQRTSKASTVCGDQVTVQ  613
            R ++D +   L +T           L V  L +N       L    S +   CGD     
Sbjct  58   RTTLD-EDGGLTLTAP-----GMPDLSVP-LADNKFDLRGVLVWGLSFSGRDCGDA----  106

Query  614  AYTSPPVAQFFSDFLGVP  631
                   A +FSDFLG P
Sbjct  107  ------AADWFSDFLGKP  118


>CDD:425567 pfam00266, Aminotran_5, Aminotransferase class-V.  This domain 
is found in amino transferases, and other enzymes including 
cysteine desulphurase EC:4.4.1.-.
Length=368

 Score = 101 bits (255),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 146/376 (39%), Gaps = 47/376 (13%)

Query  38   YLDHAGTTLYAKSLIESFSRELTSNLFGNPHSLSTSSQLSTQR-VDDVRLRALRFFKADP  96
            YLD A TT   + ++++     T +  GN H    +      +  ++ R +   F  A  
Sbjct  2    YLDSAATTQKPQEVLDAIQEYYT-DYNGNVHRGVHTLGKEATQAYEEAREKVAEFINAPS  60

Query  97   EEFDLVFVANATAAIKLVADGMRDSTRQG--FWYGYHVDAHTSLVGVRELAEKGG---RC  151
             + +++F +  T AI LVA  +  S + G        ++ H +LV  +ELA++ G   R 
Sbjct  61   ND-EIIFTSGTTEAINLVALSLGRSLKPGDEIVITE-MEHHANLVPWQELAKRTGARVRV  118

Query  152  FTSDDEVEDWISRLCDVRSESLKLFAYPAQSNMNGRRLPF-SWCKKIRDQGETTGGNVYT  210
               D++    +  L  + +   KL A    SN+ G   P     K     G         
Sbjct  119  LPLDEDGLLDLDELEKLITPKTKLVAITHVSNVTGTIQPVPEIGKLAHQYG------ALV  172

Query  211  LLDAASLVSTSPLDLSDASAAPDFTVLSFYKIFGFPDLGALIVRKSAGQIFEHRRYFGGG  270
            L+DAA  +   P+D+       DF   S +K++G   +G L  R+   +        GGG
Sbjct  173  LVDAAQAIGHRPIDVQKLGV--DFLAFSGHKLYGPTGIGVLYGRRDLLEKMPP-LLGGGG  229

Query  271  TVDMVLTRGLQ-WHAKKQSSIHDRLEDGTLPFHNIIALDSAFATHERLFGSMQNISSHTR  329
             ++ V    LQ            + E GT     II L +A      +   ++ I  H  
Sbjct  230  MIETV---SLQESTFADAPW---KFEAGTPNIAGIIGLGAALEYLSEI--GLEAIEKHEH  281

Query  330  FLAKRLYDRLNALRHFNGQRVCELYKSPRSDYNQPSTQGPIIAFNLRNSQGSWIGKSEVE  389
             LA+ LY+RL +L          LY   R        +  II+FN +          +V 
Sbjct  282  ELAQYLYERLLSLPG------IRLYGPER--------RASIISFNFKGVHP-----HDVA  322

Query  390  RLAATKNIQIRSGSLC  405
             L     I +RSG  C
Sbjct  323  TLLDESGIAVRSGHHC  338



Lambda      K        H        a         alpha
   0.319    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1073764472


Query= TCONS_00030557

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426329 pfam01569, PAP2, PAP2 superfamily. This family include...  80.2    8e-19


>CDD:426329 pfam01569, PAP2, PAP2 superfamily.  This family includes the 
enzyme type 2 phosphatidic acid phosphatase (PAP2), Glucose-6-phosphatase 
EC:3.1.3.9, Phosphatidylglycerophosphatase B EC:3.1.3.27 
and bacterial acid phosphatase EC:3.1.3.2. The family 
also includes a variety of haloperoxidases that function 
by oxidising halides in the presence of hydrogen peroxide 
to form the corresponding hypohalous acids.
Length=124

 Score = 80.2 bits (198),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 64/143 (45%), Gaps = 23/143 (16%)

Query  130  LLLSQGLAFLITQVLKTACGKPRPDLIDRCKPRPGSEDLIPGLSNSTICTGDPAIIKDGF  189
            LLL+  LA L++ VLK   G+PRP  +                         P+ +    
Sbjct  2    LLLALALAGLLSSVLKDYFGRPRPFFLLLEGG----------------LVPAPSTLPGLG  45

Query  190  RSWPS--ASFAGLFYLTLWLCGKLHFMDNRGEVWKAIIVIIPCLAATLIAVSRIMDARHH  247
             S+PS  ++ A    L L L      +    ++ + ++ ++  + A L+ +SR+    H 
Sbjct  46   YSFPSGHSATAFALALLLAL-----LLRRLRKIVRVLLALLLLVLALLVGLSRLYLGVHF  100

Query  248  PFDVISGSLLGIICAYISYRQYF  270
            P DV++G+L+GI+ A + YR   
Sbjct  101  PSDVLAGALIGILLALLVYRLVP  123



Lambda      K        H        a         alpha
   0.322    0.139    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00030556

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00030558

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426329 pfam01569, PAP2, PAP2 superfamily. This family include...  65.9    1e-13


>CDD:426329 pfam01569, PAP2, PAP2 superfamily.  This family includes the 
enzyme type 2 phosphatidic acid phosphatase (PAP2), Glucose-6-phosphatase 
EC:3.1.3.9, Phosphatidylglycerophosphatase B EC:3.1.3.27 
and bacterial acid phosphatase EC:3.1.3.2. The family 
also includes a variety of haloperoxidases that function 
by oxidising halides in the presence of hydrogen peroxide 
to form the corresponding hypohalous acids.
Length=124

 Score = 65.9 bits (161),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 33/150 (22%)

Query  130  LLLSQGLAFLITQVLKTACGKPRPDLIDRCKPRPGSEDLIPGLSNS-----TICTGDPAI  184
            LLL+  LA L++ VLK   G+PRP  +        +   +PGL  S     +        
Sbjct  2    LLLALALAGLLSSVLKDYFGRPRPFFLLLEGGLVPAPSTLPGLGYSFPSGHSA-------  54

Query  185  IKDGFRSWPSGHSSSSFAGLFYLTLWLCGKLHFMDNRGEVWKAIIVIIPCLAATLIAVSR  244
                             A    L L L      +    ++ + ++ ++  + A L+ +SR
Sbjct  55   ----------------TAFALALLLAL-----LLRRLRKIVRVLLALLLLVLALLVGLSR  93

Query  245  IMDARHHPFDVISGSLLGIICAYISYRQYF  274
            +    H P DV++G+L+GI+ A + YR   
Sbjct  94   LYLGVHFPSDVLAGALIGILLALLVYRLVP  123



Lambda      K        H        a         alpha
   0.322    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00035041

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426329 pfam01569, PAP2, PAP2 superfamily. This family include...  65.9    1e-13


>CDD:426329 pfam01569, PAP2, PAP2 superfamily.  This family includes the 
enzyme type 2 phosphatidic acid phosphatase (PAP2), Glucose-6-phosphatase 
EC:3.1.3.9, Phosphatidylglycerophosphatase B EC:3.1.3.27 
and bacterial acid phosphatase EC:3.1.3.2. The family 
also includes a variety of haloperoxidases that function 
by oxidising halides in the presence of hydrogen peroxide 
to form the corresponding hypohalous acids.
Length=124

 Score = 65.9 bits (161),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 33/150 (22%)

Query  130  LLLSQGLAFLITQVLKTACGKPRPDLIDRCKPRPGSEDLIPGLSNS-----TICTGDPAI  184
            LLL+  LA L++ VLK   G+PRP  +        +   +PGL  S     +        
Sbjct  2    LLLALALAGLLSSVLKDYFGRPRPFFLLLEGGLVPAPSTLPGLGYSFPSGHSA-------  54

Query  185  IKDGFRSWPSGHSSSSFAGLFYLTLWLCGKLHFMDNRGEVWKAIIVIIPCLAATLIAVSR  244
                             A    L L L      +    ++ + ++ ++  + A L+ +SR
Sbjct  55   ----------------TAFALALLLAL-----LLRRLRKIVRVLLALLLLVLALLVGLSR  93

Query  245  IMDARHHPFDVISGSLLGIICAYISYRQYF  274
            +    H P DV++G+L+GI+ A + YR   
Sbjct  94   LYLGVHFPSDVLAGALIGILLALLVYRLVP  123



Lambda      K        H        a         alpha
   0.322    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00030559

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426329 pfam01569, PAP2, PAP2 superfamily. This family include...  59.0    1e-11


>CDD:426329 pfam01569, PAP2, PAP2 superfamily.  This family includes the 
enzyme type 2 phosphatidic acid phosphatase (PAP2), Glucose-6-phosphatase 
EC:3.1.3.9, Phosphatidylglycerophosphatase B EC:3.1.3.27 
and bacterial acid phosphatase EC:3.1.3.2. The family 
also includes a variety of haloperoxidases that function 
by oxidising halides in the presence of hydrogen peroxide 
to form the corresponding hypohalous acids.
Length=124

 Score = 59.0 bits (143),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 37/145 (26%), Positives = 63/145 (43%), Gaps = 23/145 (16%)

Query  130  LLLSQGLAFLITQVLKTACGKPRPDLIDRCKPRPGSEDLIPGLSNSTICTGDPAIIKDGF  189
            LLL+  LA L++ VLK   G+PRP  +        +   +PGL  S              
Sbjct  2    LLLALALAGLLSSVLKDYFGRPRPFFLLLEGGLVPAPSTLPGLGYSFPSG----------  51

Query  190  RSWPSGHSSSSFAGLFYLTLWLCGKLHFMDNRGEVWKAIIVIIPCLAATLIAVSRIMDAR  249
                     S+ A    L L L      +    ++ + ++ ++  + A L+ +SR+    
Sbjct  52   --------HSATAFALALLLAL-----LLRRLRKIVRVLLALLLLVLALLVGLSRLYLGV  98

Query  250  HHPFDVISGSLLGIICAYISYRQYF  274
            H P DV++G+L+GI+ A + YR   
Sbjct  99   HFPSDVLAGALIGILLALLVYRLVP  123



Lambda      K        H        a         alpha
   0.328    0.145    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00035043

Length=320


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00030560

Length=843
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:281474 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain....  107     4e-28
CDD:425567 pfam00266, Aminotran_5, Aminotransferase class-V. This...  101     1e-23


>CDD:281474 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain.  This 
domain is found to the N-terminus of pfam03473. The function 
of this domain is unknown, however it is predicted to adopt 
a beta barrel fold.
Length=118

 Score = 107 bits (269),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 41/138 (30%), Positives = 59/138 (43%), Gaps = 21/138 (15%)

Query  494  FYIESLSLYPIKSCGPFKVPDGRRWEIRREGLAWDREWCLIHQGTGAALNQKKYPRMALI  553
              + SL +YPIKSC    +      E+   GLAWDR + ++    G  +  ++ PR+ LI
Sbjct  2    ARVSSLYVYPIKSCRGESLSRA---ELTAAGLAWDRRFMVVD-SDGKFVTARREPRLVLI  57

Query  554  RPSIDLDRNVLRVTCGEPGSTDQKLLEVSLLRENTELATTSLCQRTSKASTVCGDQVTVQ  613
            R ++D +   L +T           L V  L +N       L    S +   CGD     
Sbjct  58   RTTLD-EDGGLTLTAP-----GMPDLSVP-LADNKFDLRGVLVWGLSFSGRDCGDA----  106

Query  614  AYTSPPVAQFFSDFLGVP  631
                   A +FSDFLG P
Sbjct  107  ------AADWFSDFLGKP  118


>CDD:425567 pfam00266, Aminotran_5, Aminotransferase class-V.  This domain 
is found in amino transferases, and other enzymes including 
cysteine desulphurase EC:4.4.1.-.
Length=368

 Score = 101 bits (255),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 146/376 (39%), Gaps = 47/376 (13%)

Query  38   YLDHAGTTLYAKSLIESFSRELTSNLFGNPHSLSTSSQLSTQR-VDDVRLRALRFFKADP  96
            YLD A TT   + ++++     T +  GN H    +      +  ++ R +   F  A  
Sbjct  2    YLDSAATTQKPQEVLDAIQEYYT-DYNGNVHRGVHTLGKEATQAYEEAREKVAEFINAPS  60

Query  97   EEFDLVFVANATAAIKLVADGMRDSTRQG--FWYGYHVDAHTSLVGVRELAEKGG---RC  151
             + +++F +  T AI LVA  +  S + G        ++ H +LV  +ELA++ G   R 
Sbjct  61   ND-EIIFTSGTTEAINLVALSLGRSLKPGDEIVITE-MEHHANLVPWQELAKRTGARVRV  118

Query  152  FTSDDEVEDWISRLCDVRSESLKLFAYPAQSNMNGRRLPF-SWCKKIRDQGETTGGNVYT  210
               D++    +  L  + +   KL A    SN+ G   P     K     G         
Sbjct  119  LPLDEDGLLDLDELEKLITPKTKLVAITHVSNVTGTIQPVPEIGKLAHQYG------ALV  172

Query  211  LLDAASLVSTSPLDLSDASAAPDFTVLSFYKIFGFPDLGALIVRKSAGQIFEHRRYFGGG  270
            L+DAA  +   P+D+       DF   S +K++G   +G L  R+   +        GGG
Sbjct  173  LVDAAQAIGHRPIDVQKLGV--DFLAFSGHKLYGPTGIGVLYGRRDLLEKMPP-LLGGGG  229

Query  271  TVDMVLTRGLQ-WHAKKQSSIHDRLEDGTLPFHNIIALDSAFATHERLFGSMQNISSHTR  329
             ++ V    LQ            + E GT     II L +A      +   ++ I  H  
Sbjct  230  MIETV---SLQESTFADAPW---KFEAGTPNIAGIIGLGAALEYLSEI--GLEAIEKHEH  281

Query  330  FLAKRLYDRLNALRHFNGQRVCELYKSPRSDYNQPSTQGPIIAFNLRNSQGSWIGKSEVE  389
             LA+ LY+RL +L          LY   R        +  II+FN +          +V 
Sbjct  282  ELAQYLYERLLSLPG------IRLYGPER--------RASIISFNFKGVHP-----HDVA  322

Query  390  RLAATKNIQIRSGSLC  405
             L     I +RSG  C
Sbjct  323  TLLDESGIAVRSGHHC  338



Lambda      K        H        a         alpha
   0.319    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1073764472


Query= TCONS_00035044

Length=843
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:281474 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain....  107     4e-28
CDD:425567 pfam00266, Aminotran_5, Aminotransferase class-V. This...  101     1e-23


>CDD:281474 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain.  This 
domain is found to the N-terminus of pfam03473. The function 
of this domain is unknown, however it is predicted to adopt 
a beta barrel fold.
Length=118

 Score = 107 bits (269),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 41/138 (30%), Positives = 59/138 (43%), Gaps = 21/138 (15%)

Query  494  FYIESLSLYPIKSCGPFKVPDGRRWEIRREGLAWDREWCLIHQGTGAALNQKKYPRMALI  553
              + SL +YPIKSC    +      E+   GLAWDR + ++    G  +  ++ PR+ LI
Sbjct  2    ARVSSLYVYPIKSCRGESLSRA---ELTAAGLAWDRRFMVVD-SDGKFVTARREPRLVLI  57

Query  554  RPSIDLDRNVLRVTCGEPGSTDQKLLEVSLLRENTELATTSLCQRTSKASTVCGDQVTVQ  613
            R ++D +   L +T           L V  L +N       L    S +   CGD     
Sbjct  58   RTTLD-EDGGLTLTAP-----GMPDLSVP-LADNKFDLRGVLVWGLSFSGRDCGDA----  106

Query  614  AYTSPPVAQFFSDFLGVP  631
                   A +FSDFLG P
Sbjct  107  ------AADWFSDFLGKP  118


>CDD:425567 pfam00266, Aminotran_5, Aminotransferase class-V.  This domain 
is found in amino transferases, and other enzymes including 
cysteine desulphurase EC:4.4.1.-.
Length=368

 Score = 101 bits (255),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 146/376 (39%), Gaps = 47/376 (13%)

Query  38   YLDHAGTTLYAKSLIESFSRELTSNLFGNPHSLSTSSQLSTQR-VDDVRLRALRFFKADP  96
            YLD A TT   + ++++     T +  GN H    +      +  ++ R +   F  A  
Sbjct  2    YLDSAATTQKPQEVLDAIQEYYT-DYNGNVHRGVHTLGKEATQAYEEAREKVAEFINAPS  60

Query  97   EEFDLVFVANATAAIKLVADGMRDSTRQG--FWYGYHVDAHTSLVGVRELAEKGG---RC  151
             + +++F +  T AI LVA  +  S + G        ++ H +LV  +ELA++ G   R 
Sbjct  61   ND-EIIFTSGTTEAINLVALSLGRSLKPGDEIVITE-MEHHANLVPWQELAKRTGARVRV  118

Query  152  FTSDDEVEDWISRLCDVRSESLKLFAYPAQSNMNGRRLPF-SWCKKIRDQGETTGGNVYT  210
               D++    +  L  + +   KL A    SN+ G   P     K     G         
Sbjct  119  LPLDEDGLLDLDELEKLITPKTKLVAITHVSNVTGTIQPVPEIGKLAHQYG------ALV  172

Query  211  LLDAASLVSTSPLDLSDASAAPDFTVLSFYKIFGFPDLGALIVRKSAGQIFEHRRYFGGG  270
            L+DAA  +   P+D+       DF   S +K++G   +G L  R+   +        GGG
Sbjct  173  LVDAAQAIGHRPIDVQKLGV--DFLAFSGHKLYGPTGIGVLYGRRDLLEKMPP-LLGGGG  229

Query  271  TVDMVLTRGLQ-WHAKKQSSIHDRLEDGTLPFHNIIALDSAFATHERLFGSMQNISSHTR  329
             ++ V    LQ            + E GT     II L +A      +   ++ I  H  
Sbjct  230  MIETV---SLQESTFADAPW---KFEAGTPNIAGIIGLGAALEYLSEI--GLEAIEKHEH  281

Query  330  FLAKRLYDRLNALRHFNGQRVCELYKSPRSDYNQPSTQGPIIAFNLRNSQGSWIGKSEVE  389
             LA+ LY+RL +L          LY   R        +  II+FN +          +V 
Sbjct  282  ELAQYLYERLLSLPG------IRLYGPER--------RASIISFNFKGVHP-----HDVA  322

Query  390  RLAATKNIQIRSGSLC  405
             L     I +RSG  C
Sbjct  323  TLLDESGIAVRSGHHC  338



Lambda      K        H        a         alpha
   0.319    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1073764472


Query= TCONS_00035045

Length=462


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 570537888


Query= TCONS_00030563

Length=796
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  183     1e-54
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  115     5e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 183 bits (468),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 76/197 (39%), Positives = 112/197 (57%), Gaps = 32/197 (16%)

Query  388  TPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIV  447
            TPIQ  AIP  L+ RD++  A TGSGKT +FLLP L  +           + ++GP A+V
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL----------DKLDNGPQALV  50

Query  448  LAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI  507
            LAPTRELA+QI  E +K  + LG  V S++GG S +EQ   L+ G +I++ TPGRL+D +
Sbjct  51   LAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLL  109

Query  508  ERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAENSAAMRSHRY  567
            + R L L     +++DEA R++D+GF   + +IL  LP                      
Sbjct  110  QERKL-LKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKK--------------------  148

Query  568  RQTMMYTATMPSAVERI  584
            RQ ++ +AT+P  +E +
Sbjct  149  RQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 115 bits (290),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query  622  KRLADILSSGEFRPPIIVFVNIKRNCDAIAREI--KQMGFSSVTLHGSKTQEQREAALAS  679
            + L ++L        +++F   K+  +A   E+  ++ G     LHG  +QE+RE  L  
Sbjct  4    EALLELLKKER-GGKVLIFSQTKKTLEA---ELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  680  VRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAG  729
             R G  DVLVATD+A RG+D+PDV LV+N+++  +  SY  RIGR GRAG
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.313    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1021516704


Query= TCONS_00030564

Length=796
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  183     1e-54
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  115     5e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 183 bits (468),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 76/197 (39%), Positives = 112/197 (57%), Gaps = 32/197 (16%)

Query  388  TPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIV  447
            TPIQ  AIP  L+ RD++  A TGSGKT +FLLP L  +           + ++GP A+V
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL----------DKLDNGPQALV  50

Query  448  LAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI  507
            LAPTRELA+QI  E +K  + LG  V S++GG S +EQ   L+ G +I++ TPGRL+D +
Sbjct  51   LAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLL  109

Query  508  ERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAENSAAMRSHRY  567
            + R L L     +++DEA R++D+GF   + +IL  LP                      
Sbjct  110  QERKL-LKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKK--------------------  148

Query  568  RQTMMYTATMPSAVERI  584
            RQ ++ +AT+P  +E +
Sbjct  149  RQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 115 bits (290),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query  622  KRLADILSSGEFRPPIIVFVNIKRNCDAIAREI--KQMGFSSVTLHGSKTQEQREAALAS  679
            + L ++L        +++F   K+  +A   E+  ++ G     LHG  +QE+RE  L  
Sbjct  4    EALLELLKKER-GGKVLIFSQTKKTLEA---ELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  680  VRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAG  729
             R G  DVLVATD+A RG+D+PDV LV+N+++  +  SY  RIGR GRAG
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.313    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1021516704


Query= TCONS_00030562

Length=796
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  183     1e-54
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  115     5e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 183 bits (468),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 76/197 (39%), Positives = 112/197 (57%), Gaps = 32/197 (16%)

Query  388  TPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIV  447
            TPIQ  AIP  L+ RD++  A TGSGKT +FLLP L  +           + ++GP A+V
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL----------DKLDNGPQALV  50

Query  448  LAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI  507
            LAPTRELA+QI  E +K  + LG  V S++GG S +EQ   L+ G +I++ TPGRL+D +
Sbjct  51   LAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLL  109

Query  508  ERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAENSAAMRSHRY  567
            + R L L     +++DEA R++D+GF   + +IL  LP                      
Sbjct  110  QERKL-LKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKK--------------------  148

Query  568  RQTMMYTATMPSAVERI  584
            RQ ++ +AT+P  +E +
Sbjct  149  RQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 115 bits (290),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query  622  KRLADILSSGEFRPPIIVFVNIKRNCDAIAREI--KQMGFSSVTLHGSKTQEQREAALAS  679
            + L ++L        +++F   K+  +A   E+  ++ G     LHG  +QE+RE  L  
Sbjct  4    EALLELLKKER-GGKVLIFSQTKKTLEA---ELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  680  VRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAG  729
             R G  DVLVATD+A RG+D+PDV LV+N+++  +  SY  RIGR GRAG
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.313    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1021516704


Query= TCONS_00035047

Length=468


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00030568

Length=468


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0642    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00030566

Length=415


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00035048

Length=796
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  183     1e-54
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  115     5e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 183 bits (468),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 76/197 (39%), Positives = 112/197 (57%), Gaps = 32/197 (16%)

Query  388  TPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIV  447
            TPIQ  AIP  L+ RD++  A TGSGKT +FLLP L  +           + ++GP A+V
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL----------DKLDNGPQALV  50

Query  448  LAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI  507
            LAPTRELA+QI  E +K  + LG  V S++GG S +EQ   L+ G +I++ TPGRL+D +
Sbjct  51   LAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLL  109

Query  508  ERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAENSAAMRSHRY  567
            + R L L     +++DEA R++D+GF   + +IL  LP                      
Sbjct  110  QERKL-LKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKK--------------------  148

Query  568  RQTMMYTATMPSAVERI  584
            RQ ++ +AT+P  +E +
Sbjct  149  RQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 115 bits (290),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query  622  KRLADILSSGEFRPPIIVFVNIKRNCDAIAREI--KQMGFSSVTLHGSKTQEQREAALAS  679
            + L ++L        +++F   K+  +A   E+  ++ G     LHG  +QE+RE  L  
Sbjct  4    EALLELLKKER-GGKVLIFSQTKKTLEA---ELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  680  VRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAG  729
             R G  DVLVATD+A RG+D+PDV LV+N+++  +  SY  RIGR GRAG
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.313    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1021516704


Query= TCONS_00030565

Length=796
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  183     1e-54
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  115     5e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 183 bits (468),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 76/197 (39%), Positives = 112/197 (57%), Gaps = 32/197 (16%)

Query  388  TPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIV  447
            TPIQ  AIP  L+ RD++  A TGSGKT +FLLP L  +           + ++GP A+V
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL----------DKLDNGPQALV  50

Query  448  LAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI  507
            LAPTRELA+QI  E +K  + LG  V S++GG S +EQ   L+ G +I++ TPGRL+D +
Sbjct  51   LAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLL  109

Query  508  ERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAENSAAMRSHRY  567
            + R L L     +++DEA R++D+GF   + +IL  LP                      
Sbjct  110  QERKL-LKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKK--------------------  148

Query  568  RQTMMYTATMPSAVERI  584
            RQ ++ +AT+P  +E +
Sbjct  149  RQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 115 bits (290),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query  622  KRLADILSSGEFRPPIIVFVNIKRNCDAIAREI--KQMGFSSVTLHGSKTQEQREAALAS  679
            + L ++L        +++F   K+  +A   E+  ++ G     LHG  +QE+RE  L  
Sbjct  4    EALLELLKKER-GGKVLIFSQTKKTLEA---ELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  680  VRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAG  729
             R G  DVLVATD+A RG+D+PDV LV+N+++  +  SY  RIGR GRAG
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.313    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1021516704


Query= TCONS_00030561

Length=796
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  183     1e-54
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  115     5e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 183 bits (468),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 76/197 (39%), Positives = 112/197 (57%), Gaps = 32/197 (16%)

Query  388  TPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIV  447
            TPIQ  AIP  L+ RD++  A TGSGKT +FLLP L  +           + ++GP A+V
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL----------DKLDNGPQALV  50

Query  448  LAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI  507
            LAPTRELA+QI  E +K  + LG  V S++GG S +EQ   L+ G +I++ TPGRL+D +
Sbjct  51   LAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLL  109

Query  508  ERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAENSAAMRSHRY  567
            + R L L     +++DEA R++D+GF   + +IL  LP                      
Sbjct  110  QERKL-LKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKK--------------------  148

Query  568  RQTMMYTATMPSAVERI  584
            RQ ++ +AT+P  +E +
Sbjct  149  RQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 115 bits (290),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query  622  KRLADILSSGEFRPPIIVFVNIKRNCDAIAREI--KQMGFSSVTLHGSKTQEQREAALAS  679
            + L ++L        +++F   K+  +A   E+  ++ G     LHG  +QE+RE  L  
Sbjct  4    EALLELLKKER-GGKVLIFSQTKKTLEA---ELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  680  VRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAG  729
             R G  DVLVATD+A RG+D+PDV LV+N+++  +  SY  RIGR GRAG
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.313    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1021516704


Query= TCONS_00035049

Length=597


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 754686140


Query= TCONS_00030567

Length=415


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00030569

Length=415


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00035050

Length=796
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  183     1e-54
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  115     5e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 183 bits (468),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 76/197 (39%), Positives = 112/197 (57%), Gaps = 32/197 (16%)

Query  388  TPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIV  447
            TPIQ  AIP  L+ RD++  A TGSGKT +FLLP L  +           + ++GP A+V
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL----------DKLDNGPQALV  50

Query  448  LAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI  507
            LAPTRELA+QI  E +K  + LG  V S++GG S +EQ   L+ G +I++ TPGRL+D +
Sbjct  51   LAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLL  109

Query  508  ERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAENSAAMRSHRY  567
            + R L L     +++DEA R++D+GF   + +IL  LP                      
Sbjct  110  QERKL-LKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKK--------------------  148

Query  568  RQTMMYTATMPSAVERI  584
            RQ ++ +AT+P  +E +
Sbjct  149  RQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 115 bits (290),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query  622  KRLADILSSGEFRPPIIVFVNIKRNCDAIAREI--KQMGFSSVTLHGSKTQEQREAALAS  679
            + L ++L        +++F   K+  +A   E+  ++ G     LHG  +QE+RE  L  
Sbjct  4    EALLELLKKER-GGKVLIFSQTKKTLEA---ELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  680  VRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAG  729
             R G  DVLVATD+A RG+D+PDV LV+N+++  +  SY  RIGR GRAG
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.313    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1021516704


Query= TCONS_00035051

Length=415


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00035052

Length=635
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  183     2e-55
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  114     9e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 183 bits (468),  Expect = 2e-55, Method: Composition-based stats.
 Identities = 76/197 (39%), Positives = 112/197 (57%), Gaps = 32/197 (16%)

Query  227  TPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIV  286
            TPIQ  AIP  L+ RD++  A TGSGKT +FLLP L  +           + ++GP A+V
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL----------DKLDNGPQALV  50

Query  287  LAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI  346
            LAPTRELA+QI  E +K  + LG  V S++GG S +EQ   L+ G +I++ TPGRL+D +
Sbjct  51   LAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLL  109

Query  347  ERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAENSAAMRSHRY  406
            + R L L     +++DEA R++D+GF   + +IL  LP                      
Sbjct  110  QERKL-LKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKK--------------------  148

Query  407  RQTMMYTATMPSAVERI  423
            RQ ++ +AT+P  +E +
Sbjct  149  RQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 114 bits (287),  Expect = 9e-31, Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query  461  KRLADILSSGEFRPPIIVFVNIKRNCDAIAREI--KQMGFSSVTLHGSKTQEQREAALAS  518
            + L ++L        +++F   K+  +A   E+  ++ G     LHG  +QE+RE  L  
Sbjct  4    EALLELLKKER-GGKVLIFSQTKKTLEA---ELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  519  VRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAG  568
             R G  DVLVATD+A RG+D+PDV LV+N+++  +  SY  RIGR GRAG
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.315    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 799336180


Query= TCONS_00035053

Length=796
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase. Members of th...  183     1e-54
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  115     5e-31


>CDD:425570 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family 
include the DEAD and DEAH box helicases. Helicases are involved 
in unwinding nucleic acids. The DEAD box helicases are 
involved in various aspects of RNA metabolism, including 
nuclear transcription, pre mRNA splicing, ribosome biogenesis, 
nucleocytoplasmic transport, translation, RNA decay and organellar 
gene expression.
Length=165

 Score = 183 bits (468),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 76/197 (39%), Positives = 112/197 (57%), Gaps = 32/197 (16%)

Query  388  TPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIV  447
            TPIQ  AIP  L+ RD++  A TGSGKT +FLLP L  +           + ++GP A+V
Sbjct  1    TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALEAL----------DKLDNGPQALV  50

Query  448  LAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCI  507
            LAPTRELA+QI  E +K  + LG  V S++GG S +EQ   L+ G +I++ TPGRL+D +
Sbjct  51   LAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQLEKLK-GPDILVGTPGRLLDLL  109

Query  508  ERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAENSAAMRSHRY  567
            + R L L     +++DEA R++D+GF   + +IL  LP                      
Sbjct  110  QERKL-LKNLKLLVLDEAHRLLDMGFGPDLEEILRRLPKK--------------------  148

Query  568  RQTMMYTATMPSAVERI  584
            RQ ++ +AT+P  +E +
Sbjct  149  RQILLLSATLPRNLEDL  165


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 115 bits (290),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query  622  KRLADILSSGEFRPPIIVFVNIKRNCDAIAREI--KQMGFSSVTLHGSKTQEQREAALAS  679
            + L ++L        +++F   K+  +A   E+  ++ G     LHG  +QE+RE  L  
Sbjct  4    EALLELLKKER-GGKVLIFSQTKKTLEA---ELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  680  VRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAG  729
             R G  DVLVATD+A RG+D+PDV LV+N+++  +  SY  RIGR GRAG
Sbjct  60   FRKGKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.313    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1021516704


Query= TCONS_00030570

Length=825
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:280139 pfam01902, Diphthami_syn_2, Diphthamide synthase. Diph...  69.8    7e-14


>CDD:280139 pfam01902, Diphthami_syn_2, Diphthamide synthase.  Diphthamide_syn, 
diphthamide synthase, catalyzes the last amidation step 
of diphthamide biosynthesis using ammonium and ATP. Diphthamide 
synthase is evolutionarily conserved in eukaryotes. Diphthamide 
is a post-translationally modified histidine residue 
found on archaeal and eukaryotic translation elongation 
factor 2 (eEF-2). In some members of this family this domain 
is associated with pfam01042. The enzyme classification is 
EC:6.3.1.14.
Length=219

 Score = 69.8 bits (171),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 95/235 (40%), Gaps = 65/235 (28%)

Query  120  DSFMYQTIGHSVIPLYEAALGIPLYRAPITGDAVDTSRIYRHNAADQMAEGSESANEENK  179
            +S+M+      +  L   ++GIPL +   TG+                            
Sbjct  38   ESYMFHGPNAHLTKLQAESVGIPLIKLYTTGE----------------------------  69

Query  180  QHRQDETESLVPLLRRIKAAHPEANAVSAGAILSTYQRTRIENVASRLGLVPLAWLWQYP  239
               + E E L  +L R+     +  A   GAI S YQ++RIE V   LGL   A LW   
Sbjct  70   --EEKEVEDLKGILHRL-----DVEAAVFGAIYSEYQKSRIERVCRELGLKSFAPLWH--  120

Query  240  VLPAAVERSALSAESSLLGDAGLLEDMAACGCEARIIKVASGGLDERFLWGNVSSADGAL  299
                                  L E+    G EA ++ V + GLDE +L   +       
Sbjct  121  -------EDPEE----------LAEEFVEEGFEAYVVAVKAEGLDESWLGRRID------  157

Query  300  RRRIVNGMRRFAAPGDLRGAVLGEGGEYESLALDGPGFLWRSRIEVCETEVRTGE  354
             R+ ++ +++      +  A  GEGGE+E+L LDGP  +++ R+EV E E   GE
Sbjct  158  -RKFIDELKKLNEKYGIHPA--GEGGEFETLVLDGP--IFKKRLEVKELEKYWGE  207



Lambda      K        H        a         alpha
   0.313    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1047925220


Query= TCONS_00030571

Length=812
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:280139 pfam01902, Diphthami_syn_2, Diphthamide synthase. Diph...  69.8    6e-14


>CDD:280139 pfam01902, Diphthami_syn_2, Diphthamide synthase.  Diphthamide_syn, 
diphthamide synthase, catalyzes the last amidation step 
of diphthamide biosynthesis using ammonium and ATP. Diphthamide 
synthase is evolutionarily conserved in eukaryotes. Diphthamide 
is a post-translationally modified histidine residue 
found on archaeal and eukaryotic translation elongation 
factor 2 (eEF-2). In some members of this family this domain 
is associated with pfam01042. The enzyme classification is 
EC:6.3.1.14.
Length=219

 Score = 69.8 bits (171),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 95/235 (40%), Gaps = 65/235 (28%)

Query  120  DSFMYQTIGHSVIPLYEAALGIPLYRAPITGDAVDTSRIYRHNAADQMAEGSESANEENK  179
            +S+M+      +  L   ++GIPL +   TG+                            
Sbjct  38   ESYMFHGPNAHLTKLQAESVGIPLIKLYTTGE----------------------------  69

Query  180  QHRQDETESLVPLLRRIKAAHPEANAVSAGAILSTYQRTRIENVASRLGLVPLAWLWQYP  239
               + E E L  +L R+     +  A   GAI S YQ++RIE V   LGL   A LW   
Sbjct  70   --EEKEVEDLKGILHRL-----DVEAAVFGAIYSEYQKSRIERVCRELGLKSFAPLWH--  120

Query  240  VLPAAVERSALSAESSLLGDAGLLEDMAACGCEARIIKVASGGLDERFLWGNVSSADGAL  299
                                  L E+    G EA ++ V + GLDE +L   +       
Sbjct  121  -------EDPEE----------LAEEFVEEGFEAYVVAVKAEGLDESWLGRRID------  157

Query  300  RRRIVNGMRRFAAPGDLRGAVLGEGGEYESLALDGPGFLWRSRIEVCETEVRTGE  354
             R+ ++ +++      +  A  GEGGE+E+L LDGP  +++ R+EV E E   GE
Sbjct  158  -RKFIDELKKLNEKYGIHPA--GEGGEFETLVLDGP--IFKKRLEVKELEKYWGE  207



Lambda      K        H        a         alpha
   0.313    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1044799136


Query= TCONS_00035054

Length=695
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:280139 pfam01902, Diphthami_syn_2, Diphthamide synthase. Diph...  69.1    9e-14


>CDD:280139 pfam01902, Diphthami_syn_2, Diphthamide synthase.  Diphthamide_syn, 
diphthamide synthase, catalyzes the last amidation step 
of diphthamide biosynthesis using ammonium and ATP. Diphthamide 
synthase is evolutionarily conserved in eukaryotes. Diphthamide 
is a post-translationally modified histidine residue 
found on archaeal and eukaryotic translation elongation 
factor 2 (eEF-2). In some members of this family this domain 
is associated with pfam01042. The enzyme classification is 
EC:6.3.1.14.
Length=219

 Score = 69.1 bits (169),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 53/179 (30%), Positives = 78/179 (44%), Gaps = 35/179 (20%)

Query  54   EENKQHRQDETESLVPLLRRIKAAHPEANAVSAGAILSTYQRTRIENVASRLGLVPLAWL  113
                   + E E L  +L R+     +  A   GAI S YQ++RIE V   LGL   A L
Sbjct  64   LYTTGEEEKEVEDLKGILHRL-----DVEAAVFGAIYSEYQKSRIERVCRELGLKSFAPL  118

Query  114  WQYPVLPAAVERSALSAESSLLGDAGLLEDMAACGCEARIIKVASGGLDERFLWGNVSSA  173
            W                         L E+    G EA ++ V + GLDE +L   +   
Sbjct  119  WH---------EDPEE----------LAEEFVEEGFEAYVVAVKAEGLDESWLGRRID--  157

Query  174  DGALRRRIVNGMRRFAAPGDLRGAVLGEGGEYESLALDGPGFLWRSRIEVCETEVRTGE  232
                 R+ ++ +++      +  A  GEGGE+E+L LDGP  +++ R+EV E E   GE
Sbjct  158  -----RKFIDELKKLNEKYGIHPA--GEGGEFETLVLDGP--IFKKRLEVKELEKYWGE  207



Lambda      K        H        a         alpha
   0.317    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 887823580


Query= TCONS_00030572

Length=802
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:280139 pfam01902, Diphthami_syn_2, Diphthamide synthase. Diph...  69.4    8e-14


>CDD:280139 pfam01902, Diphthami_syn_2, Diphthamide synthase.  Diphthamide_syn, 
diphthamide synthase, catalyzes the last amidation step 
of diphthamide biosynthesis using ammonium and ATP. Diphthamide 
synthase is evolutionarily conserved in eukaryotes. Diphthamide 
is a post-translationally modified histidine residue 
found on archaeal and eukaryotic translation elongation 
factor 2 (eEF-2). In some members of this family this domain 
is associated with pfam01042. The enzyme classification is 
EC:6.3.1.14.
Length=219

 Score = 69.4 bits (170),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 95/235 (40%), Gaps = 65/235 (28%)

Query  120  DSFMYQTIGHSVIPLYEAALGIPLYRAPITGDAVDTSRIYRHNAADQMAEGSESANEENK  179
            +S+M+      +  L   ++GIPL +   TG+                            
Sbjct  38   ESYMFHGPNAHLTKLQAESVGIPLIKLYTTGE----------------------------  69

Query  180  QHRQDETESLVPLLRRIKAAHPEANAVSAGAILSTYQRTRIENVASRLGLVPLAWLWQYP  239
               + E E L  +L R+     +  A   GAI S YQ++RIE V   LGL   A LW   
Sbjct  70   --EEKEVEDLKGILHRL-----DVEAAVFGAIYSEYQKSRIERVCRELGLKSFAPLWH--  120

Query  240  VLPAAVERSALSAESSLLGDAGLLEDMAACGCEARIIKVASGGLDERFLWGNVSSADGAL  299
                                  L E+    G EA ++ V + GLDE +L   +       
Sbjct  121  -------EDPEE----------LAEEFVEEGFEAYVVAVKAEGLDESWLGRRID------  157

Query  300  RRRIVNGMRRFAAPGDLRGAVLGEGGEYESLALDGPGFLWRSRIEVCETEVRTGE  354
             R+ ++ +++      +  A  GEGGE+E+L LDGP  +++ R+EV E E   GE
Sbjct  158  -RKFIDELKKLNEKYGIHPA--GEGGEFETLVLDGP--IFKKRLEVKELEKYWGE  207



Lambda      K        H        a         alpha
   0.313    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1030247616


Query= TCONS_00030573

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0754    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00030576

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461848 pfam06201, PITH, PITH domain. This family was formerly...  168     2e-53


>CDD:461848 pfam06201, PITH, PITH domain.  This family was formerly known 
as DUF1000. The full-length, Txnl1, protein which is a probable 
component of the 26S proteasome, uses its C-terminal, PITH, 
domain to associate specifically with the 26S proteasome. 
PITH derives from proteasome-interacting thioredoxin domain.
Length=148

 Score = 168 bits (427),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 56/171 (33%), Positives = 80/171 (47%), Gaps = 23/171 (13%)

Query  68   ITDQHDPKGLELLNWDSDFGTAKTLFDPSKPSALSNNGKRKEGAPADWVESDTDEQLMLF  127
            +    D   +E LN D +    +  F P       +           ++ESD DEQL++ 
Sbjct  1    LYSYIDLDKVECLNEDDEGSGKR--FKPWDERLDDD----------KYLESDADEQLLIH  48

Query  128  IPFQSTLKVHSLQVTSLASPSEDDDEAPMRPKTIQLYTNRSHVLGFDEADDITPVQTVTI  187
            IPF   +K+HS+ + +         E    PKTI+L+ NR   L FD   D  P Q + +
Sbjct  49   IPFTGPVKLHSILIRT-----GTSSEEGSAPKTIKLFINRRDNLDFD---DAEPTQEIEL  100

Query  188  QPEDWDPKTATAKIDLRFVKFQNVTSLVLFFVDGDGDSEKLRVDRIRIFGE  238
              ED        +  LRFVKFQNV+SL LFF D +G  +  R+  I + GE
Sbjct  101  TEED---DDGVVEYPLRFVKFQNVSSLTLFFEDNNGGDDVTRIYYIGLRGE  148



Lambda      K        H        a         alpha
   0.312    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00035056

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00035057

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425483 pfam00141, peroxidase, Peroxidase                          153     8e-48


>CDD:425483 pfam00141, peroxidase, Peroxidase.  
Length=187

 Score = 153 bits (390),  Expect = 8e-48, Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 81/189 (43%), Gaps = 48/189 (25%)

Query  3    FAPESDHGANAGLKIARDFLEPIKAQFPW-----ISYSDLWTLAGACAIQELGGPTIPWR  57
            F PE D   N GL+   + ++ IKA+        +S +D+  LA   A++  GGP+ P  
Sbjct  41   FKPEKDAPPNLGLRKGFEVIDDIKAKLEAACPGVVSCADILALAARDAVELAGGPSWPVP  100

Query  58   PGRQDKDVAACTP-DGRLPDASKDQRHIRDIFYRMGFNDQEIVALIGAHALGRAHPDRSG  116
             GR+D  V++    +  LP  +     +RD F R G   +++VAL GAH +GRAH     
Sbjct  101  LGRRDGTVSSAVEANSNLPAPTDSLDQLRDRFARKGLTAEDLVALSGAHTIGRAH-----  155

Query  117  YDGPWDFSPTVFTNEFFRLLVDEKWQNRKWNGPAQFTDKTTKTLMMLPADLALIKDKEFK  176
                             + L+D +                     +L +D AL+ D   +
Sbjct  156  -----------------KNLLDGR--------------------GLLTSDQALLSDPRTR  178

Query  177  KHVERYARD  185
              VERYA D
Sbjct  179  ALVERYAAD  187



Lambda      K        H        a         alpha
   0.322    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00030575

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425483 pfam00141, peroxidase, Peroxidase                          153     8e-48


>CDD:425483 pfam00141, peroxidase, Peroxidase.  
Length=187

 Score = 153 bits (390),  Expect = 8e-48, Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 81/189 (43%), Gaps = 48/189 (25%)

Query  3    FAPESDHGANAGLKIARDFLEPIKAQFPW-----ISYSDLWTLAGACAIQELGGPTIPWR  57
            F PE D   N GL+   + ++ IKA+        +S +D+  LA   A++  GGP+ P  
Sbjct  41   FKPEKDAPPNLGLRKGFEVIDDIKAKLEAACPGVVSCADILALAARDAVELAGGPSWPVP  100

Query  58   PGRQDKDVAACTP-DGRLPDASKDQRHIRDIFYRMGFNDQEIVALIGAHALGRAHPDRSG  116
             GR+D  V++    +  LP  +     +RD F R G   +++VAL GAH +GRAH     
Sbjct  101  LGRRDGTVSSAVEANSNLPAPTDSLDQLRDRFARKGLTAEDLVALSGAHTIGRAH-----  155

Query  117  YDGPWDFSPTVFTNEFFRLLVDEKWQNRKWNGPAQFTDKTTKTLMMLPADLALIKDKEFK  176
                             + L+D +                     +L +D AL+ D   +
Sbjct  156  -----------------KNLLDGR--------------------GLLTSDQALLSDPRTR  178

Query  177  KHVERYARD  185
              VERYA D
Sbjct  179  ALVERYAAD  187



Lambda      K        H        a         alpha
   0.322    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00035058

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.136    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00030577

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00030578

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461848 pfam06201, PITH, PITH domain. This family was formerly...  168     2e-53


>CDD:461848 pfam06201, PITH, PITH domain.  This family was formerly known 
as DUF1000. The full-length, Txnl1, protein which is a probable 
component of the 26S proteasome, uses its C-terminal, PITH, 
domain to associate specifically with the 26S proteasome. 
PITH derives from proteasome-interacting thioredoxin domain.
Length=148

 Score = 168 bits (427),  Expect = 2e-53, Method: Composition-based stats.
 Identities = 56/171 (33%), Positives = 80/171 (47%), Gaps = 23/171 (13%)

Query  68   ITDQHDPKGLELLNWDSDFGTAKTLFDPSKPSALSNNGKRKEGAPADWVESDTDEQLMLF  127
            +    D   +E LN D +    +  F P       +           ++ESD DEQL++ 
Sbjct  1    LYSYIDLDKVECLNEDDEGSGKR--FKPWDERLDDD----------KYLESDADEQLLIH  48

Query  128  IPFQSTLKVHSLQVTSLASPSEDDDEAPMRPKTIQLYTNRSHVLGFDEADDITPVQTVTI  187
            IPF   +K+HS+ + +         E    PKTI+L+ NR   L FD   D  P Q + +
Sbjct  49   IPFTGPVKLHSILIRT-----GTSSEEGSAPKTIKLFINRRDNLDFD---DAEPTQEIEL  100

Query  188  QPEDWDPKTATAKIDLRFVKFQNVTSLVLFFVDGDGDSEKLRVDRIRIFGE  238
              ED        +  LRFVKFQNV+SL LFF D +G  +  R+  I + GE
Sbjct  101  TEED---DDGVVEYPLRFVKFQNVSSLTLFFEDNNGGDDVTRIYYIGLRGE  148



Lambda      K        H        a         alpha
   0.312    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00030579

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00030581

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425483 pfam00141, peroxidase, Peroxidase                          153     8e-48


>CDD:425483 pfam00141, peroxidase, Peroxidase.  
Length=187

 Score = 153 bits (390),  Expect = 8e-48, Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 81/189 (43%), Gaps = 48/189 (25%)

Query  3    FAPESDHGANAGLKIARDFLEPIKAQFPW-----ISYSDLWTLAGACAIQELGGPTIPWR  57
            F PE D   N GL+   + ++ IKA+        +S +D+  LA   A++  GGP+ P  
Sbjct  41   FKPEKDAPPNLGLRKGFEVIDDIKAKLEAACPGVVSCADILALAARDAVELAGGPSWPVP  100

Query  58   PGRQDKDVAACTP-DGRLPDASKDQRHIRDIFYRMGFNDQEIVALIGAHALGRAHPDRSG  116
             GR+D  V++    +  LP  +     +RD F R G   +++VAL GAH +GRAH     
Sbjct  101  LGRRDGTVSSAVEANSNLPAPTDSLDQLRDRFARKGLTAEDLVALSGAHTIGRAH-----  155

Query  117  YDGPWDFSPTVFTNEFFRLLVDEKWQNRKWNGPAQFTDKTTKTLMMLPADLALIKDKEFK  176
                             + L+D +                     +L +D AL+ D   +
Sbjct  156  -----------------KNLLDGR--------------------GLLTSDQALLSDPRTR  178

Query  177  KHVERYARD  185
              VERYA D
Sbjct  179  ALVERYAAD  187



Lambda      K        H        a         alpha
   0.322    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00030580

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:281842 pfam03901, Glyco_transf_22, Alg9-like mannosyltransfer...  67.4    7e-13


>CDD:281842 pfam03901, Glyco_transf_22, Alg9-like mannosyltransferase family. 
 Members of this family are mannosyltransferase enzymes. 
At least some members are localized in endoplasmic reticulum 
and involved in GPI anchor biosynthesis.
Length=414

 Score = 67.4 bits (165),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 35/126 (28%), Positives = 49/126 (39%), Gaps = 15/126 (12%)

Query  3    FVLSLVSHKEVRFIYPLLPSLHILSAPPLVDYFLPAVIRSSRSYTPRRLTLIFLLLVNIV  62
            F+ SL  HKE RF+YP+ P L +LSA       L  + R S     +   L  LL  N+ 
Sbjct  303  FIYSLQPHKEERFLYPVYP-LILLSAA----IALTRLSRRSWKVRKKLSLLFLLLFFNVS  357

Query  63   IALYTTIYHASGPSNILSYLRQQHELHAPAAQTPSNLRPSVKDPSPHGITAGFLMPCHST  122
            +A    + H  G    L+       L+    +  +   P V             M C+ST
Sbjct  358  LARLFGLVHQYGA--PLAVYDVMSFLNETPRENRNPAGPPV--------NVCIGMECYST  407

Query  123  PWRSHL  128
            P    L
Sbjct  408  PSSFFL  413



Lambda      K        H        a         alpha
   0.321    0.133    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00035059

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:281842 pfam03901, Glyco_transf_22, Alg9-like mannosyltransfer...  67.4    7e-13


>CDD:281842 pfam03901, Glyco_transf_22, Alg9-like mannosyltransferase family. 
 Members of this family are mannosyltransferase enzymes. 
At least some members are localized in endoplasmic reticulum 
and involved in GPI anchor biosynthesis.
Length=414

 Score = 67.4 bits (165),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 35/126 (28%), Positives = 49/126 (39%), Gaps = 15/126 (12%)

Query  3    FVLSLVSHKEVRFIYPLLPSLHILSAPPLVDYFLPAVIRSSRSYTPRRLTLIFLLLVNIV  62
            F+ SL  HKE RF+YP+ P L +LSA       L  + R S     +   L  LL  N+ 
Sbjct  303  FIYSLQPHKEERFLYPVYP-LILLSAA----IALTRLSRRSWKVRKKLSLLFLLLFFNVS  357

Query  63   IALYTTIYHASGPSNILSYLRQQHELHAPAAQTPSNLRPSVKDPSPHGITAGFLMPCHST  122
            +A    + H  G    L+       L+    +  +   P V             M C+ST
Sbjct  358  LARLFGLVHQYGA--PLAVYDVMSFLNETPRENRNPAGPPV--------NVCIGMECYST  407

Query  123  PWRSHL  128
            P    L
Sbjct  408  PSSFFL  413



Lambda      K        H        a         alpha
   0.321    0.133    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00030582

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425483 pfam00141, peroxidase, Peroxidase                          153     8e-48


>CDD:425483 pfam00141, peroxidase, Peroxidase.  
Length=187

 Score = 153 bits (390),  Expect = 8e-48, Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 81/189 (43%), Gaps = 48/189 (25%)

Query  3    FAPESDHGANAGLKIARDFLEPIKAQFPW-----ISYSDLWTLAGACAIQELGGPTIPWR  57
            F PE D   N GL+   + ++ IKA+        +S +D+  LA   A++  GGP+ P  
Sbjct  41   FKPEKDAPPNLGLRKGFEVIDDIKAKLEAACPGVVSCADILALAARDAVELAGGPSWPVP  100

Query  58   PGRQDKDVAACTP-DGRLPDASKDQRHIRDIFYRMGFNDQEIVALIGAHALGRAHPDRSG  116
             GR+D  V++    +  LP  +     +RD F R G   +++VAL GAH +GRAH     
Sbjct  101  LGRRDGTVSSAVEANSNLPAPTDSLDQLRDRFARKGLTAEDLVALSGAHTIGRAH-----  155

Query  117  YDGPWDFSPTVFTNEFFRLLVDEKWQNRKWNGPAQFTDKTTKTLMMLPADLALIKDKEFK  176
                             + L+D +                     +L +D AL+ D   +
Sbjct  156  -----------------KNLLDGR--------------------GLLTSDQALLSDPRTR  178

Query  177  KHVERYARD  185
              VERYA D
Sbjct  179  ALVERYAAD  187



Lambda      K        H        a         alpha
   0.322    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00035060

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425483 pfam00141, peroxidase, Peroxidase                          153     8e-48


>CDD:425483 pfam00141, peroxidase, Peroxidase.  
Length=187

 Score = 153 bits (390),  Expect = 8e-48, Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 81/189 (43%), Gaps = 48/189 (25%)

Query  3    FAPESDHGANAGLKIARDFLEPIKAQFPW-----ISYSDLWTLAGACAIQELGGPTIPWR  57
            F PE D   N GL+   + ++ IKA+        +S +D+  LA   A++  GGP+ P  
Sbjct  41   FKPEKDAPPNLGLRKGFEVIDDIKAKLEAACPGVVSCADILALAARDAVELAGGPSWPVP  100

Query  58   PGRQDKDVAACTP-DGRLPDASKDQRHIRDIFYRMGFNDQEIVALIGAHALGRAHPDRSG  116
             GR+D  V++    +  LP  +     +RD F R G   +++VAL GAH +GRAH     
Sbjct  101  LGRRDGTVSSAVEANSNLPAPTDSLDQLRDRFARKGLTAEDLVALSGAHTIGRAH-----  155

Query  117  YDGPWDFSPTVFTNEFFRLLVDEKWQNRKWNGPAQFTDKTTKTLMMLPADLALIKDKEFK  176
                             + L+D +                     +L +D AL+ D   +
Sbjct  156  -----------------KNLLDGR--------------------GLLTSDQALLSDPRTR  178

Query  177  KHVERYARD  185
              VERYA D
Sbjct  179  ALVERYAAD  187



Lambda      K        H        a         alpha
   0.322    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00030583

Length=652
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460200 pfam01412, ArfGap, Putative GTPase activating protein ...  119     2e-32


>CDD:460200 pfam01412, ArfGap, Putative GTPase activating protein for Arf. 
 Putative zinc fingers with GTPase activating proteins (GAPs) 
towards the small GTPase, Arf. The GAP of ARD1 stimulates 
GTPase hydrolysis for ARD1 but not ARFs.
Length=117

 Score = 119 bits (300),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 49/85 (58%), Gaps = 1/85 (1%)

Query  24   STQMGIFLCMRCAALHRKLGTHISKVKSLTMDTWTAEQVDNMKSHGNTLMNKIFNPKNIK  83
            S  +GIF+C+ C+ +HR LG HISKV+SLT+DTWT EQ++ MK+ GN   N+ +      
Sbjct  28   SVNLGIFICIDCSGVHRSLGVHISKVRSLTLDTWTDEQLELMKAGGNDRANEFWEANLPP  87

Query  84   PPVPKDIDEADASMERYIRQKYQYR  108
               P          E +IR KY  +
Sbjct  88   SYKPPP-SSDREKRESFIRAKYVEK  111



Lambda      K        H        a         alpha
   0.310    0.125    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00030584

Length=1397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  117     6e-31
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  121     6e-31


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 117 bits (296),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 48/178 (27%), Positives = 74/178 (42%), Gaps = 36/178 (20%)

Query  1148  LKGLTMDVRGGERIGIVGRTGAGKSSIMAALFRLTELSGGSIKIDDIDIATVGLRDLRTR  1207
             LK +++ +  GE + +VG  GAGKS+++  +  L   + G+I +D  D+     + LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1208  LAIIPQDPTLFRG-TIRSNL-------DPFNEHTDLELWAALRKAHLVGQELPEDESQDG  1259
             +  + QDP LF   T+R NL              D     AL K  L             
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL----------  110

Query  1260  TLTPSSMNEKQQTVQRLHLDTIVEEEGHNFSLGQRQLMALARALVRDARIIICDEATS  1317
                                D  V E     S GQRQ +A+ARAL+   ++++ DE T+
Sbjct  111   ------------------ADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 102 bits (257),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 22/154 (14%)

Query  546  LTDINFEVGRGELLAVIGTVGSGKSSLLGALAGDMRLTEGKIR----------MGATR--  593
            L +++  +  GE+LA++G  G+GKS+LL  +AG +  TEG I             + R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  594  -SFCPQYAWIQN-VSVRENILFGSD----YDEEFYDRVIDACALRADLDIFPNGDQTEIG  647
              +  Q   +   ++VREN+  G         E   R  +A      L +    D+  +G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEA---LEKLGLGDLADRP-VG  116

Query  648  ERGITVSGGQKQRINIARAVYSKADIILMDDPLS  681
            ER  T+SGGQ+QR+ IARA+ +K  ++L+D+P +
Sbjct  117  ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 121 bits (306),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 49/274 (18%), Positives = 102/274 (37%), Gaps = 15/274 (5%)

Query  817   FIAFLVLLACLNGGLIMTGLWVSYWTSDKFPNLTAG-----QYMGIYAGICAAQALALYG  871
              I  ++L            L +        P+          Y      +  AQ +  + 
Sbjct  1     LILAILLAILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSF-  59

Query  872   FALHVTIAAAVSSKTM--LHRAMYR-VLRAPMAFFDTTPLGRITNRFSRDVQVMDSELGE  928
               L   +      +    L R +++ +LR PM+FFDT  +G + +R + D   +   LGE
Sbjct  60    --LQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  929   SIRMFAFTFTQILATMGLIIAFYHYFAIALGPLFVLFLLAAAYYRASARNLKRHDSVLRS  988
              + +   +   I+  + ++  +     + L  +  L++L +A +    R L R +    +
Sbjct  118   KLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVA  177

Query  989   TVFSRFGEAITGVASIQAYRMEGYFQRNLHESIDSMNGAYFLTFSNQRWLSIRLDAIGSL  1048
                S   E+++G+ +++A+  E Y      ++++    A                 IG L
Sbjct  178   KASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYL  237

Query  1049  MILVV----GILVVTSRFNVGPSISGLVLSYVLN  1078
                +       LV++   +VG  ++ L L   L 
Sbjct  238   SYALALWFGAYLVISGELSVGDLVAFLSLFAQLF  271


 Score = 98.9 bits (247),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 53/312 (17%), Positives = 97/312 (31%), Gaps = 41/312 (13%)

Query  140  LLIGGICQLVGMMCMILSPYVVRHLITFSTEAYAAHIRGIPGPHIGPGLGYAFGLYAMQV  199
            L++  +  ++        P V+  ++            G P         Y+  L  + +
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLLPD------GDPETQ--ALNVYSLALLLLGL  52

Query  200  LQSLTMNQALYRGMVVGGMAKAGLTSQIFAKAMRLSNRARAGGKQANDTGPKSAEGSPSG  259
             Q +      Y     G      L  ++F K +R            N             
Sbjct  53   AQFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFF----DTNSV-----------  97

Query  260  AAANDAAKETAGWSNGRITTLLGVDVDRIDTASGMLHMLWVAPIGLIVALIILIVNIGYS  319
                           G + + L  D  +I    G    L    +  IV  II++   G+ 
Sbjct  98   ---------------GELLSRLTNDTSKIRDGLGEKLGLLFQSLATIVGGIIVMFYYGWK  142

Query  320  -ALAGYALLVVGVFALAWAMRLLVQFRRAINKITDQRVTLTREILYSVRFVKFFGWESSF  378
              L   A+L + +   A   ++L +  R   K   +  ++  E L  +R VK FG E   
Sbjct  143  LTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYE  202

Query  379  LKRLEAVRNREIGSIKRLLFVRHAVVVCMVSLPTFASLLSFV--TYALSDHSLSPDRIFA  436
            L++ +      + +  +              +   +  L+     Y +    LS   + A
Sbjct  203  LEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVA  262

Query  437  SLALFNVLRMPL  448
             L+LF  L  PL
Sbjct  263  FLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1788203400


Query= TCONS_00035061

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395148 pfam00202, Aminotran_3, Aminotransferase class-III         130     9e-38


>CDD:395148 pfam00202, Aminotran_3, Aminotransferase class-III.  
Length=397

 Score = 130 bits (328),  Expect = 9e-38, Method: Composition-based stats.
 Identities = 57/138 (41%), Positives = 88/138 (64%), Gaps = 5/138 (4%)

Query  2    YPVSCVLGRKDVMLTIEPGTHGSTYGGNPLGCAVAIRALEVIQEEHMVERAEKLGHVLRK  61
            +P++  LGR +VM    PG+HG T+GGNPL CA A+  LE+I++E +++ A +LG  L++
Sbjct  260  FPLAATLGRAEVMQAFAPGSHGGTFGGNPLACAAALATLEIIEDEDLLQNAARLGAYLKE  319

Query  62   GLEAI--RSPIIQTVRGKGLLNAIVIDESKTNGHTAWDLCMLMKEKGLLAKPTHQNIIRL  119
            GLE +  +  +I+ VRGKGL+  I + E  T       + +   E G+L  P   N+IRL
Sbjct  320  GLEDLQKKYEVIKDVRGKGLMIGIELKEDVT--VNPP-ILLAALEAGVLILPCGDNVIRL  376

Query  120  APPLVITEEEIQKAVKII  137
             PPL IT+E+I + ++II
Sbjct  377  LPPLTITDEQIDEGLEII  394



Lambda      K        H        a         alpha
   0.319    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00030585

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395148 pfam00202, Aminotran_3, Aminotransferase class-III         398     2e-137


>CDD:395148 pfam00202, Aminotran_3, Aminotransferase class-III.  
Length=397

 Score = 398 bits (1025),  Expect = 2e-137, Method: Composition-based stats.
 Identities = 160/412 (39%), Positives = 232/412 (56%), Gaps = 29/412 (7%)

Query  24   FAAHNYHPLPVVFARAQGTSVWDPEGRHYLDFLSAYSAVNQGHCHPKLVAALVDQASRLT  83
            + A    P+ +   +A+G  + D +G  YLDF S  +  N GHCHP LVAA+  QA +L+
Sbjct  1    YYARGVDPILLFITKAKGCYLTDVDGNRYLDFYSGIAVTNLGHCHPALVAAVKTQADKLS  60

Query  84   LSSR-AFYNDVFPRFAEFVTKYFGFDMVLPMNTGAEAVETGIKIARKWGYKVKGIPENQA  142
              S  AF N+     AE + K    D V  MN+G+EA ET +K+ARKW  +       + 
Sbjct  61   HVSFGAFTNEPALDLAEKLLKLTPGDRVFLMNSGSEANETAVKLARKWYREKG--ATGRT  118

Query  143  VVLSAENNFHGRTFAAISLSCDPES--RENYGPYLPGIGCTIPGTDKPLKYND-----KA  195
             +++    FHGRT  A+S+    +   +  +GP+LPG           L Y D     + 
Sbjct  119  KIIAFSGAFHGRTMGALSV-TGSKPKYKTGFGPFLPGF--------PRLPYPDPEFLKEQ  169

Query  196  ALREAFEN----AGPNLAAFLVEPIQGEAGIVVPDDDYLREARALCDKHNVLLICDEIQT  251
               E  E         +AA +VEPIQGE G+  P   +L   RA+C KH VLLI DE+QT
Sbjct  170  RCLEELEALIAVKDDEVAAVIVEPIQGEGGVNPPSPGFLAGLRAICKKHGVLLIADEVQT  229

Query  252  GIARTGKLLCHEWSGIKPDLVLLGKAISGGMYPVSCVLGRKDVMLTIEPGTHGSTYGGNP  311
            G  RTGKL  HE  G+ PD++   KA++GG  P++  LGR +VM    PG+HG T+GGNP
Sbjct  230  GFGRTGKLFAHEHWGVPPDIMTFAKALTGGF-PLAATLGRAEVMQAFAPGSHGGTFGGNP  288

Query  312  LGCAVAIRALEVIQEEHMVERAEKLGHVLRKGLEAI--RSPIIQTVRGKGLLNAIVIDES  369
            L CA A+  LE+I++E +++ A +LG  L++GLE +  +  +I+ VRGKGL+  I + E 
Sbjct  289  LACAAALATLEIIEDEDLLQNAARLGAYLKEGLEDLQKKYEVIKDVRGKGLMIGIELKED  348

Query  370  KTNGHTAWDLCMLMKEKGLLAKPTHQNIIRLAPPLVITEEEIQKAVKIIAEA  421
             T       + +   E G+L  P   N+IRL PPL IT+E+I + ++II++A
Sbjct  349  VT--VNPP-ILLAALEAGVLILPCGDNVIRLLPPLTITDEQIDEGLEIISKA  397



Lambda      K        H        a         alpha
   0.318    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00030586

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395148 pfam00202, Aminotran_3, Aminotransferase class-III         398     2e-137


>CDD:395148 pfam00202, Aminotran_3, Aminotransferase class-III.  
Length=397

 Score = 398 bits (1025),  Expect = 2e-137, Method: Composition-based stats.
 Identities = 160/412 (39%), Positives = 232/412 (56%), Gaps = 29/412 (7%)

Query  24   FAAHNYHPLPVVFARAQGTSVWDPEGRHYLDFLSAYSAVNQGHCHPKLVAALVDQASRLT  83
            + A    P+ +   +A+G  + D +G  YLDF S  +  N GHCHP LVAA+  QA +L+
Sbjct  1    YYARGVDPILLFITKAKGCYLTDVDGNRYLDFYSGIAVTNLGHCHPALVAAVKTQADKLS  60

Query  84   LSSR-AFYNDVFPRFAEFVTKYFGFDMVLPMNTGAEAVETGIKIARKWGYKVKGIPENQA  142
              S  AF N+     AE + K    D V  MN+G+EA ET +K+ARKW  +       + 
Sbjct  61   HVSFGAFTNEPALDLAEKLLKLTPGDRVFLMNSGSEANETAVKLARKWYREKG--ATGRT  118

Query  143  VVLSAENNFHGRTFAAISLSCDPES--RENYGPYLPGIGCTIPGTDKPLKYND-----KA  195
             +++    FHGRT  A+S+    +   +  +GP+LPG           L Y D     + 
Sbjct  119  KIIAFSGAFHGRTMGALSV-TGSKPKYKTGFGPFLPGF--------PRLPYPDPEFLKEQ  169

Query  196  ALREAFEN----AGPNLAAFLVEPIQGEAGIVVPDDDYLREARALCDKHNVLLICDEIQT  251
               E  E         +AA +VEPIQGE G+  P   +L   RA+C KH VLLI DE+QT
Sbjct  170  RCLEELEALIAVKDDEVAAVIVEPIQGEGGVNPPSPGFLAGLRAICKKHGVLLIADEVQT  229

Query  252  GIARTGKLLCHEWSGIKPDLVLLGKAISGGMYPVSCVLGRKDVMLTIEPGTHGSTYGGNP  311
            G  RTGKL  HE  G+ PD++   KA++GG  P++  LGR +VM    PG+HG T+GGNP
Sbjct  230  GFGRTGKLFAHEHWGVPPDIMTFAKALTGGF-PLAATLGRAEVMQAFAPGSHGGTFGGNP  288

Query  312  LGCAVAIRALEVIQEEHMVERAEKLGHVLRKGLEAI--RSPIIQTVRGKGLLNAIVIDES  369
            L CA A+  LE+I++E +++ A +LG  L++GLE +  +  +I+ VRGKGL+  I + E 
Sbjct  289  LACAAALATLEIIEDEDLLQNAARLGAYLKEGLEDLQKKYEVIKDVRGKGLMIGIELKED  348

Query  370  KTNGHTAWDLCMLMKEKGLLAKPTHQNIIRLAPPLVITEEEIQKAVKIIAEA  421
             T       + +   E G+L  P   N+IRL PPL IT+E+I + ++II++A
Sbjct  349  VT--VNPP-ILLAALEAGVLILPCGDNVIRLLPPLTITDEQIDEGLEIISKA  397



Lambda      K        H        a         alpha
   0.318    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00030587

Length=1397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  117     6e-31
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  121     6e-31


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 117 bits (296),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 48/178 (27%), Positives = 74/178 (42%), Gaps = 36/178 (20%)

Query  1148  LKGLTMDVRGGERIGIVGRTGAGKSSIMAALFRLTELSGGSIKIDDIDIATVGLRDLRTR  1207
             LK +++ +  GE + +VG  GAGKS+++  +  L   + G+I +D  D+     + LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1208  LAIIPQDPTLFRG-TIRSNL-------DPFNEHTDLELWAALRKAHLVGQELPEDESQDG  1259
             +  + QDP LF   T+R NL              D     AL K  L             
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL----------  110

Query  1260  TLTPSSMNEKQQTVQRLHLDTIVEEEGHNFSLGQRQLMALARALVRDARIIICDEATS  1317
                                D  V E     S GQRQ +A+ARAL+   ++++ DE T+
Sbjct  111   ------------------ADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 102 bits (257),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 22/154 (14%)

Query  546  LTDINFEVGRGELLAVIGTVGSGKSSLLGALAGDMRLTEGKIR----------MGATR--  593
            L +++  +  GE+LA++G  G+GKS+LL  +AG +  TEG I             + R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  594  -SFCPQYAWIQN-VSVRENILFGSD----YDEEFYDRVIDACALRADLDIFPNGDQTEIG  647
              +  Q   +   ++VREN+  G         E   R  +A      L +    D+  +G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEA---LEKLGLGDLADRP-VG  116

Query  648  ERGITVSGGQKQRINIARAVYSKADIILMDDPLS  681
            ER  T+SGGQ+QR+ IARA+ +K  ++L+D+P +
Sbjct  117  ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 121 bits (306),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 49/274 (18%), Positives = 102/274 (37%), Gaps = 15/274 (5%)

Query  817   FIAFLVLLACLNGGLIMTGLWVSYWTSDKFPNLTAG-----QYMGIYAGICAAQALALYG  871
              I  ++L            L +        P+          Y      +  AQ +  + 
Sbjct  1     LILAILLAILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSF-  59

Query  872   FALHVTIAAAVSSKTM--LHRAMYR-VLRAPMAFFDTTPLGRITNRFSRDVQVMDSELGE  928
               L   +      +    L R +++ +LR PM+FFDT  +G + +R + D   +   LGE
Sbjct  60    --LQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  929   SIRMFAFTFTQILATMGLIIAFYHYFAIALGPLFVLFLLAAAYYRASARNLKRHDSVLRS  988
              + +   +   I+  + ++  +     + L  +  L++L +A +    R L R +    +
Sbjct  118   KLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVA  177

Query  989   TVFSRFGEAITGVASIQAYRMEGYFQRNLHESIDSMNGAYFLTFSNQRWLSIRLDAIGSL  1048
                S   E+++G+ +++A+  E Y      ++++    A                 IG L
Sbjct  178   KASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYL  237

Query  1049  MILVV----GILVVTSRFNVGPSISGLVLSYVLN  1078
                +       LV++   +VG  ++ L L   L 
Sbjct  238   SYALALWFGAYLVISGELSVGDLVAFLSLFAQLF  271


 Score = 98.9 bits (247),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 53/312 (17%), Positives = 97/312 (31%), Gaps = 41/312 (13%)

Query  140  LLIGGICQLVGMMCMILSPYVVRHLITFSTEAYAAHIRGIPGPHIGPGLGYAFGLYAMQV  199
            L++  +  ++        P V+  ++            G P         Y+  L  + +
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLLPD------GDPETQ--ALNVYSLALLLLGL  52

Query  200  LQSLTMNQALYRGMVVGGMAKAGLTSQIFAKAMRLSNRARAGGKQANDTGPKSAEGSPSG  259
             Q +      Y     G      L  ++F K +R            N             
Sbjct  53   AQFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFF----DTNSV-----------  97

Query  260  AAANDAAKETAGWSNGRITTLLGVDVDRIDTASGMLHMLWVAPIGLIVALIILIVNIGYS  319
                           G + + L  D  +I    G    L    +  IV  II++   G+ 
Sbjct  98   ---------------GELLSRLTNDTSKIRDGLGEKLGLLFQSLATIVGGIIVMFYYGWK  142

Query  320  -ALAGYALLVVGVFALAWAMRLLVQFRRAINKITDQRVTLTREILYSVRFVKFFGWESSF  378
              L   A+L + +   A   ++L +  R   K   +  ++  E L  +R VK FG E   
Sbjct  143  LTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYE  202

Query  379  LKRLEAVRNREIGSIKRLLFVRHAVVVCMVSLPTFASLLSFV--TYALSDHSLSPDRIFA  436
            L++ +      + +  +              +   +  L+     Y +    LS   + A
Sbjct  203  LEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVA  262

Query  437  SLALFNVLRMPL  448
             L+LF  L  PL
Sbjct  263  FLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1788203400


Query= TCONS_00035064

Length=1247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  117     5e-31
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  119     3e-30


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 117 bits (296),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 48/178 (27%), Positives = 74/178 (42%), Gaps = 36/178 (20%)

Query  998   LKGLTMDVRGGERIGIVGRTGAGKSSIMAALFRLTELSGGSIKIDDIDIATVGLRDLRTR  1057
             LK +++ +  GE + +VG  GAGKS+++  +  L   + G+I +D  D+     + LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1058  LAIIPQDPTLFRG-TIRSNL-------DPFNEHTDLELWAALRKAHLVGQELPEDESQDG  1109
             +  + QDP LF   T+R NL              D     AL K  L             
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL----------  110

Query  1110  TLTPSSMNEKQQTVQRLHLDTIVEEEGHNFSLGQRQLMALARALVRDARIIICDEATS  1167
                                D  V E     S GQRQ +A+ARAL+   ++++ DE T+
Sbjct  111   ------------------ADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 102 bits (257),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 22/154 (14%)

Query  396  LTDINFEVGRGELLAVIGTVGSGKSSLLGALAGDMRLTEGKIR----------MGATR--  443
            L +++  +  GE+LA++G  G+GKS+LL  +AG +  TEG I             + R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  444  -SFCPQYAWIQN-VSVRENILFGSD----YDEEFYDRVIDACALRADLDIFPNGDQTEIG  497
              +  Q   +   ++VREN+  G         E   R  +A      L +    D+  +G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEA---LEKLGLGDLADRP-VG  116

Query  498  ERGITVSGGQKQRINIARAVYSKADIILMDDPLS  531
            ER  T+SGGQ+QR+ IARA+ +K  ++L+D+P +
Sbjct  117  ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 119 bits (300),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 49/274 (18%), Positives = 102/274 (37%), Gaps = 15/274 (5%)

Query  667  FIAFLVLLACLNGGLIMTGLWVSYWTSDKFPNLTAG-----QYMGIYAGICAAQALALYG  721
             I  ++L            L +        P+          Y      +  AQ +  + 
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSF-  59

Query  722  FALHVTIAAAVSSKTM--LHRAMYR-VLRAPMAFFDTTPLGRITNRFSRDVQVMDSELGE  778
              L   +      +    L R +++ +LR PM+FFDT  +G + +R + D   +   LGE
Sbjct  60   --LQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  779  SIRMFAFTFTQILATMGLIIAFYHYFAIALGPLFVLFLLAAAYYRASARNLKRHDSVLRS  838
             + +   +   I+  + ++  +     + L  +  L++L +A +    R L R +    +
Sbjct  118  KLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVA  177

Query  839  TVFSRFGEAITGVASIQAYRMEGYFQRNLHESIDSMNGAYFLTFSNQRWLSIRLDAIGSL  898
               S   E+++G+ +++A+  E Y      ++++    A                 IG L
Sbjct  178  KASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYL  237

Query  899  MILVV----GILVVTSRFNVGPSISGLVLSYVLN  928
               +       LV++   +VG  ++ L L   L 
Sbjct  238  SYALALWFGAYLVISGELSVGDLVAFLSLFAQLF  271


 Score = 89.2 bits (222),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 91/298 (31%), Gaps = 41/298 (14%)

Query  4    MILSPYVVRHLITFSTEAYAAHIRGIPGPHIGPGLGYAFGLYAMQVLQSLTMNQALYRGM  63
                P V+  ++            G P         Y+  L  + + Q +      Y   
Sbjct  15   SPAFPLVLGRILDVLLPD------GDPETQ--ALNVYSLALLLLGLAQFILSFLQSYLLN  66

Query  64   VVGGMAKAGLTSQIFAKAMRLSNRARAGGKQANDTGPKSAEGSPSGAAANDAAKETAGWS  123
              G      L  ++F K +R            N                           
Sbjct  67   HTGERLSRRLRRKLFKKILRQPMSFF----DTNSV-------------------------  97

Query  124  NGRITTLLGVDVDRIDTASGMLHMLWVAPIGLIVALIILIVNIGYS-ALAGYALLVVGVF  182
             G + + L  D  +I    G    L    +  IV  II++   G+   L   A+L + + 
Sbjct  98   -GELLSRLTNDTSKIRDGLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYIL  156

Query  183  ALAWAMRLLVQFRRAINKITDQRVTLTREILYSVRFVKFFGWESSFLKRLEAVRNREIGS  242
              A   ++L +  R   K   +  ++  E L  +R VK FG E   L++ +      + +
Sbjct  157  VSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKA  216

Query  243  IKRLLFVRHAVVVCMVSLPTFASLLSFV--TYALSDHSLSPDRIFASLALFNVLRMPL  298
              +              +   +  L+     Y +    LS   + A L+LF  L  PL
Sbjct  217  GIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1581713400


Query= TCONS_00035063

Length=1247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  117     5e-31
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  119     3e-30


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 117 bits (296),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 48/178 (27%), Positives = 74/178 (42%), Gaps = 36/178 (20%)

Query  998   LKGLTMDVRGGERIGIVGRTGAGKSSIMAALFRLTELSGGSIKIDDIDIATVGLRDLRTR  1057
             LK +++ +  GE + +VG  GAGKS+++  +  L   + G+I +D  D+     + LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1058  LAIIPQDPTLFRG-TIRSNL-------DPFNEHTDLELWAALRKAHLVGQELPEDESQDG  1109
             +  + QDP LF   T+R NL              D     AL K  L             
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL----------  110

Query  1110  TLTPSSMNEKQQTVQRLHLDTIVEEEGHNFSLGQRQLMALARALVRDARIIICDEATS  1167
                                D  V E     S GQRQ +A+ARAL+   ++++ DE T+
Sbjct  111   ------------------ADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 102 bits (257),  Expect = 9e-26, Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 22/154 (14%)

Query  396  LTDINFEVGRGELLAVIGTVGSGKSSLLGALAGDMRLTEGKIR----------MGATR--  443
            L +++  +  GE+LA++G  G+GKS+LL  +AG +  TEG I             + R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  444  -SFCPQYAWIQN-VSVRENILFGSD----YDEEFYDRVIDACALRADLDIFPNGDQTEIG  497
              +  Q   +   ++VREN+  G         E   R  +A      L +    D+  +G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEA---LEKLGLGDLADRP-VG  116

Query  498  ERGITVSGGQKQRINIARAVYSKADIILMDDPLS  531
            ER  T+SGGQ+QR+ IARA+ +K  ++L+D+P +
Sbjct  117  ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 119 bits (300),  Expect = 3e-30, Method: Composition-based stats.
 Identities = 49/274 (18%), Positives = 102/274 (37%), Gaps = 15/274 (5%)

Query  667  FIAFLVLLACLNGGLIMTGLWVSYWTSDKFPNLTAG-----QYMGIYAGICAAQALALYG  721
             I  ++L            L +        P+          Y      +  AQ +  + 
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSF-  59

Query  722  FALHVTIAAAVSSKTM--LHRAMYR-VLRAPMAFFDTTPLGRITNRFSRDVQVMDSELGE  778
              L   +      +    L R +++ +LR PM+FFDT  +G + +R + D   +   LGE
Sbjct  60   --LQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  779  SIRMFAFTFTQILATMGLIIAFYHYFAIALGPLFVLFLLAAAYYRASARNLKRHDSVLRS  838
             + +   +   I+  + ++  +     + L  +  L++L +A +    R L R +    +
Sbjct  118  KLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVA  177

Query  839  TVFSRFGEAITGVASIQAYRMEGYFQRNLHESIDSMNGAYFLTFSNQRWLSIRLDAIGSL  898
               S   E+++G+ +++A+  E Y      ++++    A                 IG L
Sbjct  178  KASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYL  237

Query  899  MILVV----GILVVTSRFNVGPSISGLVLSYVLN  928
               +       LV++   +VG  ++ L L   L 
Sbjct  238  SYALALWFGAYLVISGELSVGDLVAFLSLFAQLF  271


 Score = 89.2 bits (222),  Expect = 8e-20, Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 91/298 (31%), Gaps = 41/298 (14%)

Query  4    MILSPYVVRHLITFSTEAYAAHIRGIPGPHIGPGLGYAFGLYAMQVLQSLTMNQALYRGM  63
                P V+  ++            G P         Y+  L  + + Q +      Y   
Sbjct  15   SPAFPLVLGRILDVLLPD------GDPETQ--ALNVYSLALLLLGLAQFILSFLQSYLLN  66

Query  64   VVGGMAKAGLTSQIFAKAMRLSNRARAGGKQANDTGPKSAEGSPSGAAANDAAKETAGWS  123
              G      L  ++F K +R            N                           
Sbjct  67   HTGERLSRRLRRKLFKKILRQPMSFF----DTNSV-------------------------  97

Query  124  NGRITTLLGVDVDRIDTASGMLHMLWVAPIGLIVALIILIVNIGYS-ALAGYALLVVGVF  182
             G + + L  D  +I    G    L    +  IV  II++   G+   L   A+L + + 
Sbjct  98   -GELLSRLTNDTSKIRDGLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYIL  156

Query  183  ALAWAMRLLVQFRRAINKITDQRVTLTREILYSVRFVKFFGWESSFLKRLEAVRNREIGS  242
              A   ++L +  R   K   +  ++  E L  +R VK FG E   L++ +      + +
Sbjct  157  VSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKA  216

Query  243  IKRLLFVRHAVVVCMVSLPTFASLLSFV--TYALSDHSLSPDRIFASLALFNVLRMPL  298
              +              +   +  L+     Y +    LS   + A L+LF  L  PL
Sbjct  217  GIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVAFLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1581713400


Query= TCONS_00030588

Length=1397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  117     6e-31
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  121     6e-31


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 117 bits (296),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 48/178 (27%), Positives = 74/178 (42%), Gaps = 36/178 (20%)

Query  1148  LKGLTMDVRGGERIGIVGRTGAGKSSIMAALFRLTELSGGSIKIDDIDIATVGLRDLRTR  1207
             LK +++ +  GE + +VG  GAGKS+++  +  L   + G+I +D  D+     + LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1208  LAIIPQDPTLFRG-TIRSNL-------DPFNEHTDLELWAALRKAHLVGQELPEDESQDG  1259
             +  + QDP LF   T+R NL              D     AL K  L             
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL----------  110

Query  1260  TLTPSSMNEKQQTVQRLHLDTIVEEEGHNFSLGQRQLMALARALVRDARIIICDEATS  1317
                                D  V E     S GQRQ +A+ARAL+   ++++ DE T+
Sbjct  111   ------------------ADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 102 bits (257),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 22/154 (14%)

Query  546  LTDINFEVGRGELLAVIGTVGSGKSSLLGALAGDMRLTEGKIR----------MGATR--  593
            L +++  +  GE+LA++G  G+GKS+LL  +AG +  TEG I             + R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  594  -SFCPQYAWIQN-VSVRENILFGSD----YDEEFYDRVIDACALRADLDIFPNGDQTEIG  647
              +  Q   +   ++VREN+  G         E   R  +A      L +    D+  +G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEA---LEKLGLGDLADRP-VG  116

Query  648  ERGITVSGGQKQRINIARAVYSKADIILMDDPLS  681
            ER  T+SGGQ+QR+ IARA+ +K  ++L+D+P +
Sbjct  117  ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 121 bits (306),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 49/274 (18%), Positives = 102/274 (37%), Gaps = 15/274 (5%)

Query  817   FIAFLVLLACLNGGLIMTGLWVSYWTSDKFPNLTAG-----QYMGIYAGICAAQALALYG  871
              I  ++L            L +        P+          Y      +  AQ +  + 
Sbjct  1     LILAILLAILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSF-  59

Query  872   FALHVTIAAAVSSKTM--LHRAMYR-VLRAPMAFFDTTPLGRITNRFSRDVQVMDSELGE  928
               L   +      +    L R +++ +LR PM+FFDT  +G + +R + D   +   LGE
Sbjct  60    --LQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  929   SIRMFAFTFTQILATMGLIIAFYHYFAIALGPLFVLFLLAAAYYRASARNLKRHDSVLRS  988
              + +   +   I+  + ++  +     + L  +  L++L +A +    R L R +    +
Sbjct  118   KLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVA  177

Query  989   TVFSRFGEAITGVASIQAYRMEGYFQRNLHESIDSMNGAYFLTFSNQRWLSIRLDAIGSL  1048
                S   E+++G+ +++A+  E Y      ++++    A                 IG L
Sbjct  178   KASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYL  237

Query  1049  MILVV----GILVVTSRFNVGPSISGLVLSYVLN  1078
                +       LV++   +VG  ++ L L   L 
Sbjct  238   SYALALWFGAYLVISGELSVGDLVAFLSLFAQLF  271


 Score = 98.9 bits (247),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 53/312 (17%), Positives = 97/312 (31%), Gaps = 41/312 (13%)

Query  140  LLIGGICQLVGMMCMILSPYVVRHLITFSTEAYAAHIRGIPGPHIGPGLGYAFGLYAMQV  199
            L++  +  ++        P V+  ++            G P         Y+  L  + +
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLLPD------GDPETQ--ALNVYSLALLLLGL  52

Query  200  LQSLTMNQALYRGMVVGGMAKAGLTSQIFAKAMRLSNRARAGGKQANDTGPKSAEGSPSG  259
             Q +      Y     G      L  ++F K +R            N             
Sbjct  53   AQFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFF----DTNSV-----------  97

Query  260  AAANDAAKETAGWSNGRITTLLGVDVDRIDTASGMLHMLWVAPIGLIVALIILIVNIGYS  319
                           G + + L  D  +I    G    L    +  IV  II++   G+ 
Sbjct  98   ---------------GELLSRLTNDTSKIRDGLGEKLGLLFQSLATIVGGIIVMFYYGWK  142

Query  320  -ALAGYALLVVGVFALAWAMRLLVQFRRAINKITDQRVTLTREILYSVRFVKFFGWESSF  378
              L   A+L + +   A   ++L +  R   K   +  ++  E L  +R VK FG E   
Sbjct  143  LTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYE  202

Query  379  LKRLEAVRNREIGSIKRLLFVRHAVVVCMVSLPTFASLLSFV--TYALSDHSLSPDRIFA  436
            L++ +      + +  +              +   +  L+     Y +    LS   + A
Sbjct  203  LEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVA  262

Query  437  SLALFNVLRMPL  448
             L+LF  L  PL
Sbjct  263  FLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1788203400


Query= TCONS_00030589

Length=1397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  117     6e-31
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  121     6e-31


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 117 bits (296),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 48/178 (27%), Positives = 74/178 (42%), Gaps = 36/178 (20%)

Query  1148  LKGLTMDVRGGERIGIVGRTGAGKSSIMAALFRLTELSGGSIKIDDIDIATVGLRDLRTR  1207
             LK +++ +  GE + +VG  GAGKS+++  +  L   + G+I +D  D+     + LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1208  LAIIPQDPTLFRG-TIRSNL-------DPFNEHTDLELWAALRKAHLVGQELPEDESQDG  1259
             +  + QDP LF   T+R NL              D     AL K  L             
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL----------  110

Query  1260  TLTPSSMNEKQQTVQRLHLDTIVEEEGHNFSLGQRQLMALARALVRDARIIICDEATS  1317
                                D  V E     S GQRQ +A+ARAL+   ++++ DE T+
Sbjct  111   ------------------ADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 102 bits (257),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 22/154 (14%)

Query  546  LTDINFEVGRGELLAVIGTVGSGKSSLLGALAGDMRLTEGKIR----------MGATR--  593
            L +++  +  GE+LA++G  G+GKS+LL  +AG +  TEG I             + R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  594  -SFCPQYAWIQN-VSVRENILFGSD----YDEEFYDRVIDACALRADLDIFPNGDQTEIG  647
              +  Q   +   ++VREN+  G         E   R  +A      L +    D+  +G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEA---LEKLGLGDLADRP-VG  116

Query  648  ERGITVSGGQKQRINIARAVYSKADIILMDDPLS  681
            ER  T+SGGQ+QR+ IARA+ +K  ++L+D+P +
Sbjct  117  ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 121 bits (306),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 49/274 (18%), Positives = 102/274 (37%), Gaps = 15/274 (5%)

Query  817   FIAFLVLLACLNGGLIMTGLWVSYWTSDKFPNLTAG-----QYMGIYAGICAAQALALYG  871
              I  ++L            L +        P+          Y      +  AQ +  + 
Sbjct  1     LILAILLAILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSF-  59

Query  872   FALHVTIAAAVSSKTM--LHRAMYR-VLRAPMAFFDTTPLGRITNRFSRDVQVMDSELGE  928
               L   +      +    L R +++ +LR PM+FFDT  +G + +R + D   +   LGE
Sbjct  60    --LQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  929   SIRMFAFTFTQILATMGLIIAFYHYFAIALGPLFVLFLLAAAYYRASARNLKRHDSVLRS  988
              + +   +   I+  + ++  +     + L  +  L++L +A +    R L R +    +
Sbjct  118   KLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVA  177

Query  989   TVFSRFGEAITGVASIQAYRMEGYFQRNLHESIDSMNGAYFLTFSNQRWLSIRLDAIGSL  1048
                S   E+++G+ +++A+  E Y      ++++    A                 IG L
Sbjct  178   KASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYL  237

Query  1049  MILVV----GILVVTSRFNVGPSISGLVLSYVLN  1078
                +       LV++   +VG  ++ L L   L 
Sbjct  238   SYALALWFGAYLVISGELSVGDLVAFLSLFAQLF  271


 Score = 98.9 bits (247),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 53/312 (17%), Positives = 97/312 (31%), Gaps = 41/312 (13%)

Query  140  LLIGGICQLVGMMCMILSPYVVRHLITFSTEAYAAHIRGIPGPHIGPGLGYAFGLYAMQV  199
            L++  +  ++        P V+  ++            G P         Y+  L  + +
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLLPD------GDPETQ--ALNVYSLALLLLGL  52

Query  200  LQSLTMNQALYRGMVVGGMAKAGLTSQIFAKAMRLSNRARAGGKQANDTGPKSAEGSPSG  259
             Q +      Y     G      L  ++F K +R            N             
Sbjct  53   AQFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFF----DTNSV-----------  97

Query  260  AAANDAAKETAGWSNGRITTLLGVDVDRIDTASGMLHMLWVAPIGLIVALIILIVNIGYS  319
                           G + + L  D  +I    G    L    +  IV  II++   G+ 
Sbjct  98   ---------------GELLSRLTNDTSKIRDGLGEKLGLLFQSLATIVGGIIVMFYYGWK  142

Query  320  -ALAGYALLVVGVFALAWAMRLLVQFRRAINKITDQRVTLTREILYSVRFVKFFGWESSF  378
              L   A+L + +   A   ++L +  R   K   +  ++  E L  +R VK FG E   
Sbjct  143  LTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYE  202

Query  379  LKRLEAVRNREIGSIKRLLFVRHAVVVCMVSLPTFASLLSFV--TYALSDHSLSPDRIFA  436
            L++ +      + +  +              +   +  L+     Y +    LS   + A
Sbjct  203  LEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVA  262

Query  437  SLALFNVLRMPL  448
             L+LF  L  PL
Sbjct  263  FLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0629    0.140     1.90     42.6     43.6 

Effective search space used: 1788203400


Query= TCONS_00035065

Length=1397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  117     6e-31
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  121     6e-31


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 117 bits (296),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 48/178 (27%), Positives = 74/178 (42%), Gaps = 36/178 (20%)

Query  1148  LKGLTMDVRGGERIGIVGRTGAGKSSIMAALFRLTELSGGSIKIDDIDIATVGLRDLRTR  1207
             LK +++ +  GE + +VG  GAGKS+++  +  L   + G+I +D  D+     + LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1208  LAIIPQDPTLFRG-TIRSNL-------DPFNEHTDLELWAALRKAHLVGQELPEDESQDG  1259
             +  + QDP LF   T+R NL              D     AL K  L             
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL----------  110

Query  1260  TLTPSSMNEKQQTVQRLHLDTIVEEEGHNFSLGQRQLMALARALVRDARIIICDEATS  1317
                                D  V E     S GQRQ +A+ARAL+   ++++ DE T+
Sbjct  111   ------------------ADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 102 bits (257),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 22/154 (14%)

Query  546  LTDINFEVGRGELLAVIGTVGSGKSSLLGALAGDMRLTEGKIR----------MGATR--  593
            L +++  +  GE+LA++G  G+GKS+LL  +AG +  TEG I             + R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  594  -SFCPQYAWIQN-VSVRENILFGSD----YDEEFYDRVIDACALRADLDIFPNGDQTEIG  647
              +  Q   +   ++VREN+  G         E   R  +A      L +    D+  +G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEA---LEKLGLGDLADRP-VG  116

Query  648  ERGITVSGGQKQRINIARAVYSKADIILMDDPLS  681
            ER  T+SGGQ+QR+ IARA+ +K  ++L+D+P +
Sbjct  117  ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 121 bits (306),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 49/274 (18%), Positives = 102/274 (37%), Gaps = 15/274 (5%)

Query  817   FIAFLVLLACLNGGLIMTGLWVSYWTSDKFPNLTAG-----QYMGIYAGICAAQALALYG  871
              I  ++L            L +        P+          Y      +  AQ +  + 
Sbjct  1     LILAILLAILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSF-  59

Query  872   FALHVTIAAAVSSKTM--LHRAMYR-VLRAPMAFFDTTPLGRITNRFSRDVQVMDSELGE  928
               L   +      +    L R +++ +LR PM+FFDT  +G + +R + D   +   LGE
Sbjct  60    --LQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  929   SIRMFAFTFTQILATMGLIIAFYHYFAIALGPLFVLFLLAAAYYRASARNLKRHDSVLRS  988
              + +   +   I+  + ++  +     + L  +  L++L +A +    R L R +    +
Sbjct  118   KLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVA  177

Query  989   TVFSRFGEAITGVASIQAYRMEGYFQRNLHESIDSMNGAYFLTFSNQRWLSIRLDAIGSL  1048
                S   E+++G+ +++A+  E Y      ++++    A                 IG L
Sbjct  178   KASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYL  237

Query  1049  MILVV----GILVVTSRFNVGPSISGLVLSYVLN  1078
                +       LV++   +VG  ++ L L   L 
Sbjct  238   SYALALWFGAYLVISGELSVGDLVAFLSLFAQLF  271


 Score = 98.9 bits (247),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 53/312 (17%), Positives = 97/312 (31%), Gaps = 41/312 (13%)

Query  140  LLIGGICQLVGMMCMILSPYVVRHLITFSTEAYAAHIRGIPGPHIGPGLGYAFGLYAMQV  199
            L++  +  ++        P V+  ++            G P         Y+  L  + +
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLLPD------GDPETQ--ALNVYSLALLLLGL  52

Query  200  LQSLTMNQALYRGMVVGGMAKAGLTSQIFAKAMRLSNRARAGGKQANDTGPKSAEGSPSG  259
             Q +      Y     G      L  ++F K +R            N             
Sbjct  53   AQFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFF----DTNSV-----------  97

Query  260  AAANDAAKETAGWSNGRITTLLGVDVDRIDTASGMLHMLWVAPIGLIVALIILIVNIGYS  319
                           G + + L  D  +I    G    L    +  IV  II++   G+ 
Sbjct  98   ---------------GELLSRLTNDTSKIRDGLGEKLGLLFQSLATIVGGIIVMFYYGWK  142

Query  320  -ALAGYALLVVGVFALAWAMRLLVQFRRAINKITDQRVTLTREILYSVRFVKFFGWESSF  378
              L   A+L + +   A   ++L +  R   K   +  ++  E L  +R VK FG E   
Sbjct  143  LTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYE  202

Query  379  LKRLEAVRNREIGSIKRLLFVRHAVVVCMVSLPTFASLLSFV--TYALSDHSLSPDRIFA  436
            L++ +      + +  +              +   +  L+     Y +    LS   + A
Sbjct  203  LEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVA  262

Query  437  SLALFNVLRMPL  448
             L+LF  L  PL
Sbjct  263  FLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1788203400


Query= TCONS_00035067

Length=1397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  117     6e-31
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  121     6e-31


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 117 bits (296),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 48/178 (27%), Positives = 74/178 (42%), Gaps = 36/178 (20%)

Query  1148  LKGLTMDVRGGERIGIVGRTGAGKSSIMAALFRLTELSGGSIKIDDIDIATVGLRDLRTR  1207
             LK +++ +  GE + +VG  GAGKS+++  +  L   + G+I +D  D+     + LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1208  LAIIPQDPTLFRG-TIRSNL-------DPFNEHTDLELWAALRKAHLVGQELPEDESQDG  1259
             +  + QDP LF   T+R NL              D     AL K  L             
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL----------  110

Query  1260  TLTPSSMNEKQQTVQRLHLDTIVEEEGHNFSLGQRQLMALARALVRDARIIICDEATS  1317
                                D  V E     S GQRQ +A+ARAL+   ++++ DE T+
Sbjct  111   ------------------ADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 102 bits (257),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 22/154 (14%)

Query  546  LTDINFEVGRGELLAVIGTVGSGKSSLLGALAGDMRLTEGKIR----------MGATR--  593
            L +++  +  GE+LA++G  G+GKS+LL  +AG +  TEG I             + R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  594  -SFCPQYAWIQN-VSVRENILFGSD----YDEEFYDRVIDACALRADLDIFPNGDQTEIG  647
              +  Q   +   ++VREN+  G         E   R  +A      L +    D+  +G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEA---LEKLGLGDLADRP-VG  116

Query  648  ERGITVSGGQKQRINIARAVYSKADIILMDDPLS  681
            ER  T+SGGQ+QR+ IARA+ +K  ++L+D+P +
Sbjct  117  ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 121 bits (306),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 49/274 (18%), Positives = 102/274 (37%), Gaps = 15/274 (5%)

Query  817   FIAFLVLLACLNGGLIMTGLWVSYWTSDKFPNLTAG-----QYMGIYAGICAAQALALYG  871
              I  ++L            L +        P+          Y      +  AQ +  + 
Sbjct  1     LILAILLAILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSF-  59

Query  872   FALHVTIAAAVSSKTM--LHRAMYR-VLRAPMAFFDTTPLGRITNRFSRDVQVMDSELGE  928
               L   +      +    L R +++ +LR PM+FFDT  +G + +R + D   +   LGE
Sbjct  60    --LQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  929   SIRMFAFTFTQILATMGLIIAFYHYFAIALGPLFVLFLLAAAYYRASARNLKRHDSVLRS  988
              + +   +   I+  + ++  +     + L  +  L++L +A +    R L R +    +
Sbjct  118   KLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVA  177

Query  989   TVFSRFGEAITGVASIQAYRMEGYFQRNLHESIDSMNGAYFLTFSNQRWLSIRLDAIGSL  1048
                S   E+++G+ +++A+  E Y      ++++    A                 IG L
Sbjct  178   KASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYL  237

Query  1049  MILVV----GILVVTSRFNVGPSISGLVLSYVLN  1078
                +       LV++   +VG  ++ L L   L 
Sbjct  238   SYALALWFGAYLVISGELSVGDLVAFLSLFAQLF  271


 Score = 98.9 bits (247),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 53/312 (17%), Positives = 97/312 (31%), Gaps = 41/312 (13%)

Query  140  LLIGGICQLVGMMCMILSPYVVRHLITFSTEAYAAHIRGIPGPHIGPGLGYAFGLYAMQV  199
            L++  +  ++        P V+  ++            G P         Y+  L  + +
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLLPD------GDPETQ--ALNVYSLALLLLGL  52

Query  200  LQSLTMNQALYRGMVVGGMAKAGLTSQIFAKAMRLSNRARAGGKQANDTGPKSAEGSPSG  259
             Q +      Y     G      L  ++F K +R            N             
Sbjct  53   AQFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFF----DTNSV-----------  97

Query  260  AAANDAAKETAGWSNGRITTLLGVDVDRIDTASGMLHMLWVAPIGLIVALIILIVNIGYS  319
                           G + + L  D  +I    G    L    +  IV  II++   G+ 
Sbjct  98   ---------------GELLSRLTNDTSKIRDGLGEKLGLLFQSLATIVGGIIVMFYYGWK  142

Query  320  -ALAGYALLVVGVFALAWAMRLLVQFRRAINKITDQRVTLTREILYSVRFVKFFGWESSF  378
              L   A+L + +   A   ++L +  R   K   +  ++  E L  +R VK FG E   
Sbjct  143  LTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYE  202

Query  379  LKRLEAVRNREIGSIKRLLFVRHAVVVCMVSLPTFASLLSFV--TYALSDHSLSPDRIFA  436
            L++ +      + +  +              +   +  L+     Y +    LS   + A
Sbjct  203  LEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVA  262

Query  437  SLALFNVLRMPL  448
             L+LF  L  PL
Sbjct  263  FLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1788203400


Query= TCONS_00035068

Length=1397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  117     6e-31
CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane...  121     6e-31


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 117 bits (296),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 48/178 (27%), Positives = 74/178 (42%), Gaps = 36/178 (20%)

Query  1148  LKGLTMDVRGGERIGIVGRTGAGKSSIMAALFRLTELSGGSIKIDDIDIATVGLRDLRTR  1207
             LK +++ +  GE + +VG  GAGKS+++  +  L   + G+I +D  D+     + LR  
Sbjct  1     LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  1208  LAIIPQDPTLFRG-TIRSNL-------DPFNEHTDLELWAALRKAHLVGQELPEDESQDG  1259
             +  + QDP LF   T+R NL              D     AL K  L             
Sbjct  61    IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEALEKLGLGDL----------  110

Query  1260  TLTPSSMNEKQQTVQRLHLDTIVEEEGHNFSLGQRQLMALARALVRDARIIICDEATS  1317
                                D  V E     S GQRQ +A+ARAL+   ++++ DE T+
Sbjct  111   ------------------ADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


 Score = 102 bits (257),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 22/154 (14%)

Query  546  LTDINFEVGRGELLAVIGTVGSGKSSLLGALAGDMRLTEGKIR----------MGATR--  593
            L +++  +  GE+LA++G  G+GKS+LL  +AG +  TEG I             + R  
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  594  -SFCPQYAWIQN-VSVRENILFGSD----YDEEFYDRVIDACALRADLDIFPNGDQTEIG  647
              +  Q   +   ++VREN+  G         E   R  +A      L +    D+  +G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDARAEEA---LEKLGLGDLADRP-VG  116

Query  648  ERGITVSGGQKQRINIARAVYSKADIILMDDPLS  681
            ER  T+SGGQ+QR+ IARA+ +K  ++L+D+P +
Sbjct  117  ERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA  150


>CDD:459896 pfam00664, ABC_membrane, ABC transporter transmembrane region. 
 This family represents a unit of six transmembrane helices. 
Many members of the ABC transporter family (pfam00005) have 
two such regions.
Length=274

 Score = 121 bits (306),  Expect = 6e-31, Method: Composition-based stats.
 Identities = 49/274 (18%), Positives = 102/274 (37%), Gaps = 15/274 (5%)

Query  817   FIAFLVLLACLNGGLIMTGLWVSYWTSDKFPNLTAG-----QYMGIYAGICAAQALALYG  871
              I  ++L            L +        P+          Y      +  AQ +  + 
Sbjct  1     LILAILLAILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSF-  59

Query  872   FALHVTIAAAVSSKTM--LHRAMYR-VLRAPMAFFDTTPLGRITNRFSRDVQVMDSELGE  928
               L   +      +    L R +++ +LR PM+FFDT  +G + +R + D   +   LGE
Sbjct  60    --LQSYLLNHTGERLSRRLRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGE  117

Query  929   SIRMFAFTFTQILATMGLIIAFYHYFAIALGPLFVLFLLAAAYYRASARNLKRHDSVLRS  988
              + +   +   I+  + ++  +     + L  +  L++L +A +    R L R +    +
Sbjct  118   KLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVA  177

Query  989   TVFSRFGEAITGVASIQAYRMEGYFQRNLHESIDSMNGAYFLTFSNQRWLSIRLDAIGSL  1048
                S   E+++G+ +++A+  E Y      ++++    A                 IG L
Sbjct  178   KASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIGYL  237

Query  1049  MILVV----GILVVTSRFNVGPSISGLVLSYVLN  1078
                +       LV++   +VG  ++ L L   L 
Sbjct  238   SYALALWFGAYLVISGELSVGDLVAFLSLFAQLF  271


 Score = 98.9 bits (247),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 53/312 (17%), Positives = 97/312 (31%), Gaps = 41/312 (13%)

Query  140  LLIGGICQLVGMMCMILSPYVVRHLITFSTEAYAAHIRGIPGPHIGPGLGYAFGLYAMQV  199
            L++  +  ++        P V+  ++            G P         Y+  L  + +
Sbjct  1    LILAILLAILSGAISPAFPLVLGRILDVLLPD------GDPETQ--ALNVYSLALLLLGL  52

Query  200  LQSLTMNQALYRGMVVGGMAKAGLTSQIFAKAMRLSNRARAGGKQANDTGPKSAEGSPSG  259
             Q +      Y     G      L  ++F K +R            N             
Sbjct  53   AQFILSFLQSYLLNHTGERLSRRLRRKLFKKILRQPMSFF----DTNSV-----------  97

Query  260  AAANDAAKETAGWSNGRITTLLGVDVDRIDTASGMLHMLWVAPIGLIVALIILIVNIGYS  319
                           G + + L  D  +I    G    L    +  IV  II++   G+ 
Sbjct  98   ---------------GELLSRLTNDTSKIRDGLGEKLGLLFQSLATIVGGIIVMFYYGWK  142

Query  320  -ALAGYALLVVGVFALAWAMRLLVQFRRAINKITDQRVTLTREILYSVRFVKFFGWESSF  378
              L   A+L + +   A   ++L +  R   K   +  ++  E L  +R VK FG E   
Sbjct  143  LTLVLLAVLPLYILVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYE  202

Query  379  LKRLEAVRNREIGSIKRLLFVRHAVVVCMVSLPTFASLLSFV--TYALSDHSLSPDRIFA  436
            L++ +      + +  +              +   +  L+     Y +    LS   + A
Sbjct  203  LEKYDKALEEALKAGIKKAVANGLSFGITQFIGYLSYALALWFGAYLVISGELSVGDLVA  262

Query  437  SLALFNVLRMPL  448
             L+LF  L  PL
Sbjct  263  FLSLFAQLFGPL  274



Lambda      K        H        a         alpha
   0.322    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1788203400


Query= TCONS_00030590

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00035071

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  66.4    4e-14


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 66.4 bits (162),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 20/112 (18%)

Query  270  GVVARVNFDRGAAIGEFVGLI-------------------TNGISGVDVMVGGTKSRTYQ  310
            G+ A  +  +G  IGE+V ++                             +         
Sbjct  3    GLFATEDIPKGEFIGEYVEVLLITKEEADKRELLYYDKLELRLWGPYLFTLDEDSEYCID  62

Query  311  IYQGEMGNFTRFINHSCRPNSQFQRFYWRGQERIIVVS-RGVVAGREITVDY  361
                  GN+ RFINHSC PN + +  Y  G  RI++ + R +  G E+T+DY
Sbjct  63   ARALYYGNWARFINHSCDPNCEVRVVYVNGGPRIVIFALRDIKPGEELTIDY  114



Lambda      K        H        a         alpha
   0.323    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00035070

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00030591

Length=599
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  68.7    1e-14


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 68.7 bits (168),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 20/112 (18%)

Query  482  GVVARVNFDRGAAIGEFVGLI-------------------TNGISGVDVMVGGTKSRTYQ  522
            G+ A  +  +G  IGE+V ++                             +         
Sbjct  3    GLFATEDIPKGEFIGEYVEVLLITKEEADKRELLYYDKLELRLWGPYLFTLDEDSEYCID  62

Query  523  IYQGEMGNFTRFINHSCRPNSQFQRFYWRGQERIIVVS-RGVVAGREITVDY  573
                  GN+ RFINHSC PN + +  Y  G  RI++ + R +  G E+T+DY
Sbjct  63   ARALYYGNWARFINHSCDPNCEVRVVYVNGGPRIVIFALRDIKPGEELTIDY  114



Lambda      K        H        a         alpha
   0.319    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 757674996


Query= TCONS_00030592

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  66.4    4e-14


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 66.4 bits (162),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 20/112 (18%)

Query  270  GVVARVNFDRGAAIGEFVGLI-------------------TNGISGVDVMVGGTKSRTYQ  310
            G+ A  +  +G  IGE+V ++                             +         
Sbjct  3    GLFATEDIPKGEFIGEYVEVLLITKEEADKRELLYYDKLELRLWGPYLFTLDEDSEYCID  62

Query  311  IYQGEMGNFTRFINHSCRPNSQFQRFYWRGQERIIVVS-RGVVAGREITVDY  361
                  GN+ RFINHSC PN + +  Y  G  RI++ + R +  G E+T+DY
Sbjct  63   ARALYYGNWARFINHSCDPNCEVRVVYVNGGPRIVIFALRDIKPGEELTIDY  114



Lambda      K        H        a         alpha
   0.323    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00035072

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00030594

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  66.4    4e-14


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 66.4 bits (162),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 20/112 (18%)

Query  270  GVVARVNFDRGAAIGEFVGLI-------------------TNGISGVDVMVGGTKSRTYQ  310
            G+ A  +  +G  IGE+V ++                             +         
Sbjct  3    GLFATEDIPKGEFIGEYVEVLLITKEEADKRELLYYDKLELRLWGPYLFTLDEDSEYCID  62

Query  311  IYQGEMGNFTRFINHSCRPNSQFQRFYWRGQERIIVVS-RGVVAGREITVDY  361
                  GN+ RFINHSC PN + +  Y  G  RI++ + R +  G E+T+DY
Sbjct  63   ARALYYGNWARFINHSCDPNCEVRVVYVNGGPRIVIFALRDIKPGEELTIDY  114



Lambda      K        H        a         alpha
   0.323    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00030596

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  66.4    4e-14


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 66.4 bits (162),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 20/112 (18%)

Query  270  GVVARVNFDRGAAIGEFVGLI-------------------TNGISGVDVMVGGTKSRTYQ  310
            G+ A  +  +G  IGE+V ++                             +         
Sbjct  3    GLFATEDIPKGEFIGEYVEVLLITKEEADKRELLYYDKLELRLWGPYLFTLDEDSEYCID  62

Query  311  IYQGEMGNFTRFINHSCRPNSQFQRFYWRGQERIIVVS-RGVVAGREITVDY  361
                  GN+ RFINHSC PN + +  Y  G  RI++ + R +  G E+T+DY
Sbjct  63   ARALYYGNWARFINHSCDPNCEVRVVYVNGGPRIVIFALRDIKPGEELTIDY  114



Lambda      K        H        a         alpha
   0.323    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00030595

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00035073

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00035074

Length=76
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  60.2    3e-14


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 60.2 bits (146),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 21/48 (44%), Positives = 30/48 (63%), Gaps = 1/48 (2%)

Query  16   EMGNFTRFINHSCRPNSQFQRFYWRGQERIIVVS-RGVVAGREITVDY  62
              GN+ RFINHSC PN + +  Y  G  RI++ + R +  G E+T+DY
Sbjct  67   YYGNWARFINHSCDPNCEVRVVYVNGGPRIVIFALRDIKPGEELTIDY  114



Lambda      K        H        a         alpha
   0.326    0.139    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00035075

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00035076

Length=505


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00035077

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00035078

Length=88
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  59.5    1e-13


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 59.5 bits (144),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 21/48 (44%), Positives = 30/48 (63%), Gaps = 1/48 (2%)

Query  16   EMGNFTRFINHSCRPNSQFQRFYWRGQERIIVVS-RGVVAGREITVDY  62
              GN+ RFINHSC PN + +  Y  G  RI++ + R +  G E+T+DY
Sbjct  67   YYGNWARFINHSCDPNCEVRVVYVNGGPRIVIFALRDIKPGEELTIDY  114



Lambda      K        H        a         alpha
   0.327    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00030598

Length=367
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  66.4    4e-14


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 66.4 bits (162),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 20/112 (18%)

Query  250  GVVARVNFDRGAAIGEFVGLI-------------------TNGISGVDVMVGGTKSRTYQ  290
            G+ A  +  +G  IGE+V ++                             +         
Sbjct  3    GLFATEDIPKGEFIGEYVEVLLITKEEADKRELLYYDKLELRLWGPYLFTLDEDSEYCID  62

Query  291  IYQGEMGNFTRFINHSCRPNSQFQRFYWRGQERIIVVS-RGVVAGREITVDY  341
                  GN+ RFINHSC PN + +  Y  G  RI++ + R +  G E+T+DY
Sbjct  63   ARALYYGNWARFINHSCDPNCEVRVVYVNGGPRIVIFALRDIKPGEELTIDY  114



Lambda      K        H        a         alpha
   0.323    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00035079

Length=88
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459965 pfam00856, SET, SET domain. SET domains are protein ly...  59.5    1e-13


>CDD:459965 pfam00856, SET, SET domain.  SET domains are protein lysine methyltransferase 
enzymes. SET domains appear to be protein-protein 
interaction domains. It has been demonstrated that SET 
domains mediate interactions with a family of proteins that 
display similarity with dual-specificity phosphatases (dsPTPases). 
A subset of SET domains have been called PR domains. 
These domains are divergent in sequence from other SET domains, 
but also appear to mediate protein-protein interaction. 
The SET domain consists of two regions known as SET-N and 
SET-C. SET-C forms an unusual and conserved knot-like structure 
of probably functional importance. Additionally to SET-N 
and SET-C, an insert region (SET-I) and flanking regions of 
high structural variability form part of the overall structure.
Length=115

 Score = 59.5 bits (144),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 21/48 (44%), Positives = 30/48 (63%), Gaps = 1/48 (2%)

Query  16   EMGNFTRFINHSCRPNSQFQRFYWRGQERIIVVS-RGVVAGREITVDY  62
              GN+ RFINHSC PN + +  Y  G  RI++ + R +  G E+T+DY
Sbjct  67   YYGNWARFINHSCDPNCEVRVVYVNGGPRIVIFALRDIKPGEELTIDY  114



Lambda      K        H        a         alpha
   0.327    0.140    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00035080

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00035081

Length=293


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0653    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00035082

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00030601

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.114    0.311    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00035083

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  99.6    3e-26
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  93.9    3e-24
CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain. ...  75.9    5e-17
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  63.5    3e-13


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 99.6 bits (249),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 40/98 (41%), Positives = 54/98 (55%), Gaps = 5/98 (5%)

Query  173  VLDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPL  232
            VLDLGCG GR+   + +  GGA+VTG+++ P  + +A++   + G   +FV  D     L
Sbjct  1    VLDLGCGTGRLTLALAR-RGGARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAED--L  57

Query  233  PFEDESFDAFYQIQALSLC--KDLTALFREIYRVVKPG  268
            PF D SFD       L      DL A  REI RV+KPG
Sbjct  58   PFPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPG  95


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 93.9 bits (234),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query  174  LDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPLP  233
            LD+GCG G +   + +   GA+VTG++I P  +  A++   + G    FVV D   LP  
Sbjct  1    LDVGCGTGLLTELLARL--GARVTGVDISPEMLELAREKAPREGL--TFVVGDAEDLP--  54

Query  234  FEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKISL  273
            F D SFD     + L   +D     REI RV+KPG  + +
Sbjct  55   FPDNSFDLVLSSEVLHHVEDPERALREIARVLKPGGILII  94


>CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain.  This family 
appears to have methyltransferase activity.
Length=150

 Score = 75.9 bits (187),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 47/157 (30%), Positives = 68/157 (43%), Gaps = 11/157 (7%)

Query  167  LGPGDKVLDLGCGRGR---VAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQN-KF  222
            +  G +VLDLGCG G      A   +    A+V GI+I    + +A++   K GF N +F
Sbjct  1    IDKGMRVLDLGCGTGHLSFELAE--ELGPNAEVVGIDISEEAIEKARENAQKLGFDNVEF  58

Query  223  VVQDFNSLPLPFEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKISLLDWVSLPAY  282
               D   LP   ED+ FD       L+   D   + +EI RV+KPG ++ + D  SL   
Sbjct  59   EQGDIEELPELLEDDKFDVVISNCVLNHIPDPDKVLQEILRVLKPGGRLIISDPDSLAEL  118

Query  283  DPSNPEHAELMRRVKPLIGAVGTPTPEILERALVDAG  319
                P H +            G    + L   L +AG
Sbjct  119  ----PAHVKEDSTYYAGCVG-GAILKKKLYELLEEAG  150


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 63.5 bits (155),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 27/98 (28%), Positives = 44/98 (45%), Gaps = 0/98 (0%)

Query  174  LDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPLP  233
            L++GCG G +   + +   G + TG++I P  +  A++     G  N   V+ F      
Sbjct  1    LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAALGLLNAVRVELFQLDLGE  60

Query  234  FEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKI  271
             +  SFD       L    D  A+ R I R++KPG  +
Sbjct  61   LDPGSFDVVVASNVLHHLADPRAVLRNIRRLLKPGGVL  98



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00030604

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  99.6    3e-26
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  93.9    3e-24
CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain. ...  75.9    5e-17
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  63.5    3e-13


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 99.6 bits (249),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 40/98 (41%), Positives = 54/98 (55%), Gaps = 5/98 (5%)

Query  173  VLDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPL  232
            VLDLGCG GR+   + +  GGA+VTG+++ P  + +A++   + G   +FV  D     L
Sbjct  1    VLDLGCGTGRLTLALAR-RGGARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAED--L  57

Query  233  PFEDESFDAFYQIQALSLC--KDLTALFREIYRVVKPG  268
            PF D SFD       L      DL A  REI RV+KPG
Sbjct  58   PFPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPG  95


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 93.9 bits (234),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query  174  LDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPLP  233
            LD+GCG G +   + +   GA+VTG++I P  +  A++   + G    FVV D   LP  
Sbjct  1    LDVGCGTGLLTELLARL--GARVTGVDISPEMLELAREKAPREGL--TFVVGDAEDLP--  54

Query  234  FEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKISL  273
            F D SFD     + L   +D     REI RV+KPG  + +
Sbjct  55   FPDNSFDLVLSSEVLHHVEDPERALREIARVLKPGGILII  94


>CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain.  This family 
appears to have methyltransferase activity.
Length=150

 Score = 75.9 bits (187),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 47/157 (30%), Positives = 68/157 (43%), Gaps = 11/157 (7%)

Query  167  LGPGDKVLDLGCGRGR---VAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQN-KF  222
            +  G +VLDLGCG G      A   +    A+V GI+I    + +A++   K GF N +F
Sbjct  1    IDKGMRVLDLGCGTGHLSFELAE--ELGPNAEVVGIDISEEAIEKARENAQKLGFDNVEF  58

Query  223  VVQDFNSLPLPFEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKISLLDWVSLPAY  282
               D   LP   ED+ FD       L+   D   + +EI RV+KPG ++ + D  SL   
Sbjct  59   EQGDIEELPELLEDDKFDVVISNCVLNHIPDPDKVLQEILRVLKPGGRLIISDPDSLAEL  118

Query  283  DPSNPEHAELMRRVKPLIGAVGTPTPEILERALVDAG  319
                P H +            G    + L   L +AG
Sbjct  119  ----PAHVKEDSTYYAGCVG-GAILKKKLYELLEEAG  150


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 63.5 bits (155),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 27/98 (28%), Positives = 44/98 (45%), Gaps = 0/98 (0%)

Query  174  LDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPLP  233
            L++GCG G +   + +   G + TG++I P  +  A++     G  N   V+ F      
Sbjct  1    LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAALGLLNAVRVELFQLDLGE  60

Query  234  FEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKI  271
             +  SFD       L    D  A+ R I R++KPG  +
Sbjct  61   LDPGSFDVVVASNVLHHLADPRAVLRNIRRLLKPGGVL  98



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00030603

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  99.6    3e-26
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  93.9    3e-24
CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain. ...  75.9    5e-17
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  63.5    3e-13


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 99.6 bits (249),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 40/98 (41%), Positives = 54/98 (55%), Gaps = 5/98 (5%)

Query  173  VLDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPL  232
            VLDLGCG GR+   + +  GGA+VTG+++ P  + +A++   + G   +FV  D     L
Sbjct  1    VLDLGCGTGRLTLALAR-RGGARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAED--L  57

Query  233  PFEDESFDAFYQIQALSLC--KDLTALFREIYRVVKPG  268
            PF D SFD       L      DL A  REI RV+KPG
Sbjct  58   PFPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPG  95


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 93.9 bits (234),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query  174  LDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPLP  233
            LD+GCG G +   + +   GA+VTG++I P  +  A++   + G    FVV D   LP  
Sbjct  1    LDVGCGTGLLTELLARL--GARVTGVDISPEMLELAREKAPREGL--TFVVGDAEDLP--  54

Query  234  FEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKISL  273
            F D SFD     + L   +D     REI RV+KPG  + +
Sbjct  55   FPDNSFDLVLSSEVLHHVEDPERALREIARVLKPGGILII  94


>CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain.  This family 
appears to have methyltransferase activity.
Length=150

 Score = 75.9 bits (187),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 47/157 (30%), Positives = 68/157 (43%), Gaps = 11/157 (7%)

Query  167  LGPGDKVLDLGCGRGR---VAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQN-KF  222
            +  G +VLDLGCG G      A   +    A+V GI+I    + +A++   K GF N +F
Sbjct  1    IDKGMRVLDLGCGTGHLSFELAE--ELGPNAEVVGIDISEEAIEKARENAQKLGFDNVEF  58

Query  223  VVQDFNSLPLPFEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKISLLDWVSLPAY  282
               D   LP   ED+ FD       L+   D   + +EI RV+KPG ++ + D  SL   
Sbjct  59   EQGDIEELPELLEDDKFDVVISNCVLNHIPDPDKVLQEILRVLKPGGRLIISDPDSLAEL  118

Query  283  DPSNPEHAELMRRVKPLIGAVGTPTPEILERALVDAG  319
                P H +            G    + L   L +AG
Sbjct  119  ----PAHVKEDSTYYAGCVG-GAILKKKLYELLEEAG  150


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 63.5 bits (155),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 27/98 (28%), Positives = 44/98 (45%), Gaps = 0/98 (0%)

Query  174  LDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPLP  233
            L++GCG G +   + +   G + TG++I P  +  A++     G  N   V+ F      
Sbjct  1    LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAALGLLNAVRVELFQLDLGE  60

Query  234  FEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKI  271
             +  SFD       L    D  A+ R I R++KPG  +
Sbjct  61   LDPGSFDVVVASNVLHHLADPRAVLRNIRRLLKPGGVL  98



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00030602

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  99.6    3e-26
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  93.9    3e-24
CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain. ...  75.9    5e-17
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  63.5    3e-13


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 99.6 bits (249),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 40/98 (41%), Positives = 54/98 (55%), Gaps = 5/98 (5%)

Query  173  VLDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPL  232
            VLDLGCG GR+   + +  GGA+VTG+++ P  + +A++   + G   +FV  D     L
Sbjct  1    VLDLGCGTGRLTLALAR-RGGARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAED--L  57

Query  233  PFEDESFDAFYQIQALSLC--KDLTALFREIYRVVKPG  268
            PF D SFD       L      DL A  REI RV+KPG
Sbjct  58   PFPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPG  95


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 93.9 bits (234),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query  174  LDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPLP  233
            LD+GCG G +   + +   GA+VTG++I P  +  A++   + G    FVV D   LP  
Sbjct  1    LDVGCGTGLLTELLARL--GARVTGVDISPEMLELAREKAPREGL--TFVVGDAEDLP--  54

Query  234  FEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKISL  273
            F D SFD     + L   +D     REI RV+KPG  + +
Sbjct  55   FPDNSFDLVLSSEVLHHVEDPERALREIARVLKPGGILII  94


>CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain.  This family 
appears to have methyltransferase activity.
Length=150

 Score = 75.9 bits (187),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 47/157 (30%), Positives = 68/157 (43%), Gaps = 11/157 (7%)

Query  167  LGPGDKVLDLGCGRGR---VAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQN-KF  222
            +  G +VLDLGCG G      A   +    A+V GI+I    + +A++   K GF N +F
Sbjct  1    IDKGMRVLDLGCGTGHLSFELAE--ELGPNAEVVGIDISEEAIEKARENAQKLGFDNVEF  58

Query  223  VVQDFNSLPLPFEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKISLLDWVSLPAY  282
               D   LP   ED+ FD       L+   D   + +EI RV+KPG ++ + D  SL   
Sbjct  59   EQGDIEELPELLEDDKFDVVISNCVLNHIPDPDKVLQEILRVLKPGGRLIISDPDSLAEL  118

Query  283  DPSNPEHAELMRRVKPLIGAVGTPTPEILERALVDAG  319
                P H +            G    + L   L +AG
Sbjct  119  ----PAHVKEDSTYYAGCVG-GAILKKKLYELLEEAG  150


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 63.5 bits (155),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 27/98 (28%), Positives = 44/98 (45%), Gaps = 0/98 (0%)

Query  174  LDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPLP  233
            L++GCG G +   + +   G + TG++I P  +  A++     G  N   V+ F      
Sbjct  1    LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAALGLLNAVRVELFQLDLGE  60

Query  234  FEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKI  271
             +  SFD       L    D  A+ R I R++KPG  +
Sbjct  61   LDPGSFDVVVASNVLHHLADPRAVLRNIRRLLKPGGVL  98



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00035084

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  99.6    3e-26
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  93.9    3e-24
CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain. ...  75.9    5e-17
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  63.5    3e-13


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 99.6 bits (249),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 40/98 (41%), Positives = 54/98 (55%), Gaps = 5/98 (5%)

Query  173  VLDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPL  232
            VLDLGCG GR+   + +  GGA+VTG+++ P  + +A++   + G   +FV  D     L
Sbjct  1    VLDLGCGTGRLTLALAR-RGGARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAED--L  57

Query  233  PFEDESFDAFYQIQALSLC--KDLTALFREIYRVVKPG  268
            PF D SFD       L      DL A  REI RV+KPG
Sbjct  58   PFPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPG  95


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 93.9 bits (234),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query  174  LDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPLP  233
            LD+GCG G +   + +   GA+VTG++I P  +  A++   + G    FVV D   LP  
Sbjct  1    LDVGCGTGLLTELLARL--GARVTGVDISPEMLELAREKAPREGL--TFVVGDAEDLP--  54

Query  234  FEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKISL  273
            F D SFD     + L   +D     REI RV+KPG  + +
Sbjct  55   FPDNSFDLVLSSEVLHHVEDPERALREIARVLKPGGILII  94


>CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain.  This family 
appears to have methyltransferase activity.
Length=150

 Score = 75.9 bits (187),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 47/157 (30%), Positives = 68/157 (43%), Gaps = 11/157 (7%)

Query  167  LGPGDKVLDLGCGRGR---VAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQN-KF  222
            +  G +VLDLGCG G      A   +    A+V GI+I    + +A++   K GF N +F
Sbjct  1    IDKGMRVLDLGCGTGHLSFELAE--ELGPNAEVVGIDISEEAIEKARENAQKLGFDNVEF  58

Query  223  VVQDFNSLPLPFEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKISLLDWVSLPAY  282
               D   LP   ED+ FD       L+   D   + +EI RV+KPG ++ + D  SL   
Sbjct  59   EQGDIEELPELLEDDKFDVVISNCVLNHIPDPDKVLQEILRVLKPGGRLIISDPDSLAEL  118

Query  283  DPSNPEHAELMRRVKPLIGAVGTPTPEILERALVDAG  319
                P H +            G    + L   L +AG
Sbjct  119  ----PAHVKEDSTYYAGCVG-GAILKKKLYELLEEAG  150


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 63.5 bits (155),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 27/98 (28%), Positives = 44/98 (45%), Gaps = 0/98 (0%)

Query  174  LDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPLP  233
            L++GCG G +   + +   G + TG++I P  +  A++     G  N   V+ F      
Sbjct  1    LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAALGLLNAVRVELFQLDLGE  60

Query  234  FEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKI  271
             +  SFD       L    D  A+ R I R++KPG  +
Sbjct  61   LDPGSFDVVVASNVLHHLADPRAVLRNIRRLLKPGGVL  98



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00030605

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  99.6    3e-26
CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  93.9    3e-24
CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain. ...  75.9    5e-17
CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain. ...  63.5    3e-13


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 99.6 bits (249),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 40/98 (41%), Positives = 54/98 (55%), Gaps = 5/98 (5%)

Query  173  VLDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPL  232
            VLDLGCG GR+   + +  GGA+VTG+++ P  + +A++   + G   +FV  D     L
Sbjct  1    VLDLGCGTGRLTLALAR-RGGARVTGVDLSPEMLERARERAAEAGLNVEFVQGDAED--L  57

Query  233  PFEDESFDAFYQIQALSLC--KDLTALFREIYRVVKPG  268
            PF D SFD       L      DL A  REI RV+KPG
Sbjct  58   PFPDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPG  95


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 93.9 bits (234),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query  174  LDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPLP  233
            LD+GCG G +   + +   GA+VTG++I P  +  A++   + G    FVV D   LP  
Sbjct  1    LDVGCGTGLLTELLARL--GARVTGVDISPEMLELAREKAPREGL--TFVVGDAEDLP--  54

Query  234  FEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKISL  273
            F D SFD     + L   +D     REI RV+KPG  + +
Sbjct  55   FPDNSFDLVLSSEVLHHVEDPERALREIARVLKPGGILII  94


>CDD:463998 pfam13847, Methyltransf_31, Methyltransferase domain.  This family 
appears to have methyltransferase activity.
Length=150

 Score = 75.9 bits (187),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 47/157 (30%), Positives = 68/157 (43%), Gaps = 11/157 (7%)

Query  167  LGPGDKVLDLGCGRGR---VAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQN-KF  222
            +  G +VLDLGCG G      A   +    A+V GI+I    + +A++   K GF N +F
Sbjct  1    IDKGMRVLDLGCGTGHLSFELAE--ELGPNAEVVGIDISEEAIEKARENAQKLGFDNVEF  58

Query  223  VVQDFNSLPLPFEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKISLLDWVSLPAY  282
               D   LP   ED+ FD       L+   D   + +EI RV+KPG ++ + D  SL   
Sbjct  59   EQGDIEELPELLEDDKFDVVISNCVLNHIPDPDKVLQEILRVLKPGGRLIISDPDSLAEL  118

Query  283  DPSNPEHAELMRRVKPLIGAVGTPTPEILERALVDAG  319
                P H +            G    + L   L +AG
Sbjct  119  ----PAHVKEDSTYYAGCVG-GAILKKKLYELLEEAG  150


>CDD:400515 pfam08242, Methyltransf_12, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=98

 Score = 63.5 bits (155),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 27/98 (28%), Positives = 44/98 (45%), Gaps = 0/98 (0%)

Query  174  LDLGCGRGRVAAHMTQFSGGAQVTGINIDPNQVAQAQKFNDKRGFQNKFVVQDFNSLPLP  233
            L++GCG G +   + +   G + TG++I P  +  A++     G  N   V+ F      
Sbjct  1    LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAALGLLNAVRVELFQLDLGE  60

Query  234  FEDESFDAFYQIQALSLCKDLTALFREIYRVVKPGAKI  271
             +  SFD       L    D  A+ R I R++KPG  +
Sbjct  61   LDPGSFDVVVASNVLHHLADPRAVLRNIRRLLKPGGVL  98



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00035086

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00035087

Length=229


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00035085

Length=356


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00030607

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00030606

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00035088

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00035089

Length=392


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00030608

Length=368


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00030609

Length=261


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00035090

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00030610

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00030611

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.117    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00030612

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         109     4e-26
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            70.5    1e-13


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 109 bits (275),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 94/519 (18%), Positives = 179/519 (34%), Gaps = 96/519 (18%)

Query  42   VVFVAGVGFFLDGYTLFASNMALPMVSYVY---WQNNLSSKKLTYINI-----ATLAGTL  93
            V  VA +G FL GY        L ++ +        ++SS     +           G  
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  94   FGQVLFGYLADRNGRKKMYGVELMLMITSTLGVVMSSTGENGSMDVFAWLVWW--RLVVG  151
             G +  G L DR GRKK        ++ + +  V+ +  +  +   ++       R++VG
Sbjct  61   IGSLFAGKLGDRFGRKK-------SLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVG  113

Query  152  VGVGADYPLSAVITSEFAPAKHRARMMASVFFMQPLGQIAGNIVTLIVVAVGKNQQHDDL  211
            +GVG    L+ +  SE AP K R  + +        G +   I  L +     +      
Sbjct  114  IGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDG----  169

Query  212  IRTFDIMWRWVIGIGVVPGVIATLFRVVIPETPRFLLEIEDDPVKAEFDATTLFNETPSL  271
                   WR  +G+ +VP ++  +  + +PE+PR+L+E      + E     L       
Sbjct  170  -------WRIPLGLQLVPALLLIIGLLFLPESPRWLVEKG----RLEEAREVLAKLRGVP  218

Query  272  DPEDTWRDLPMPAMSVTSQCFSEGRSPSQTEILQPATLNSHWHLTRKDITQYFWTEGNWR  331
            D                 +   E +   +                          + +W+
Sbjct  219  DV---------------DRELDEIKDSLEAGQEA--------------------EKASWK  243

Query  332  TLVGTALSWLLLDFGFYGIGLSSPQFLAKTWGSLNIHGRAPVWKTDDDPNANVFDMF-MN  390
             L  T      L     G+ L   Q L     ++  +               +F+   ++
Sbjct  244  ELFSTKTRRQRL---LIGVMLQIFQQLT-GINAIFYYS------------TTIFENLGLS  287

Query  391  SSIHALVILNIGSFVGGLLMILCSHKIDRTALQKYGFLALAAHFIAVGTMFITVHKEGPV  450
             S    +I+ + +FV   + I    +  R  L   G   +A  F+ +G + +    +   
Sbjct  288  DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDW  347

Query  451  AVILYIIGQLL----FNFGPNATTYIIPAEVFPTRYRATCHGISAGAGKLGSILVQVFSS  506
            A I+ I+   L    F  G     ++I +E+FP   R+    ++  A  L + L+     
Sbjct  348  AGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFL--  405

Query  507  YYNFGTGPGEEPTIRHGWILIVFSACMILGAAVTHFWIP  545
             +   T       I  G+   +F+  ++L      F++P
Sbjct  406  -FPIITD-----AIGLGYTFFIFAGLLVLFIIFVFFFVP  438


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 70.5 bits (173),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 28/200 (14%)

Query  48   VGFFLDGYTLFASNMALPMVSYVYWQNNLSSKKLTYINIATL--AGTLFGQVLFGYLADR  105
            +  FL          ALP+        +L         + TL   G    Q L G L+DR
Sbjct  3    LAAFLAALGRSLLGPALPL----LLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDR  58

Query  106  NGRKKMYGVELMLMITSTLGVVMSSTGENGSMDVFAWLVWWRLVVGVGVGADYPLSAVIT  165
             GR+++  + L+L     L ++ +S+           L+  R++ G+G GA +P +  + 
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASS--------LWLLLVLRVLQGLGAGALFPAALALI  110

Query  166  SEFAPAKHRARMMASVFFMQPLGQIAGNIVTLIVVAVGKNQQHDDLIRTFDIMWRWVIGI  225
            +++ P + R R +  V     LG   G ++  ++ ++                WR    I
Sbjct  111  ADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASL--------------FGWRAAFLI  156

Query  226  GVVPGVIATLFRVVIPETPR  245
              +  ++A +  ++    P 
Sbjct  157  LAILSLLAAVLLLLPRPPPE  176



Lambda      K        H        a         alpha
   0.325    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00030615

Length=482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         67.7    1e-12


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 67.7 bits (166),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 125/383 (33%), Gaps = 79/383 (21%)

Query  52   FAPAKHRARMMASVFFMQPLGQIAGNIVTLIVVAVGKNQQHDDLIRTFDIMWRWVIGIGV  111
             AP K R  + +        G +   I  L +     +             WR  +G+ +
Sbjct  130  IAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDG-----------WRIPLGLQL  178

Query  112  VPGVIATLFRVVIPETPRFLLEIEDDPVKAEFDATTLFNETPSLDPEDTWRDLPMPAMSV  171
            VP ++  +  + +PE+PR+L+E      + E     L       D               
Sbjct  179  VPALLLIIGLLFLPESPRWLVEKG----RLEEAREVLAKLRGVPDV--------------  220

Query  172  TSQCFSEGRSPSQTEILQPATLNSHWHLTRKDITQYFWTEGNWRTLVGTALSWLLLDFGF  231
              +   E +   +                          + +W+ L  T      L    
Sbjct  221  -DRELDEIKDSLEAGQEA--------------------EKASWKELFSTKTRRQRL---L  256

Query  232  YGIGLSSPQFLAKTWGSLNIHGRAPVWKTDDDPNANVFDMF-MNSSIHALVILNIGSFVG  290
             G+ L   Q L     ++  +               +F+   ++ S    +I+ + +FV 
Sbjct  257  IGVMLQIFQQLT-GINAIFYYS------------TTIFENLGLSDSFLVTIIVGVVNFVF  303

Query  291  GLLMILCSHKIDRTALQKYGFLALAAHFIAVGTMFITVHKEGPVAVILYIIGQLL----F  346
              + I    +  R  L   G   +A  F+ +G + +    +   A I+ I+   L    F
Sbjct  304  TFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIVFIALFIAFF  363

Query  347  NFGPNATTYIIPAEVFPTRYRATCHGISAGAGKLGSILVQVFSSYYNFGTGPGEEPTIRH  406
              G     ++I +E+FP   R+    ++  A  L + L+      +   T       I  
Sbjct  364  AMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFL---FPIITD-----AIGL  415

Query  407  GWILIVFSACMILGAAVTHFWIP  429
            G+   +F+  ++L      F++P
Sbjct  416  GYTFFIFAGLLVLFIIFVFFFVP  438



Lambda      K        H        a         alpha
   0.325    0.139    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 591999806


Query= TCONS_00030613

Length=482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         67.7    1e-12


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 67.7 bits (166),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 125/383 (33%), Gaps = 79/383 (21%)

Query  52   FAPAKHRARMMASVFFMQPLGQIAGNIVTLIVVAVGKNQQHDDLIRTFDIMWRWVIGIGV  111
             AP K R  + +        G +   I  L +     +             WR  +G+ +
Sbjct  130  IAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDG-----------WRIPLGLQL  178

Query  112  VPGVIATLFRVVIPETPRFLLEIEDDPVKAEFDATTLFNETPSLDPEDTWRDLPMPAMSV  171
            VP ++  +  + +PE+PR+L+E      + E     L       D               
Sbjct  179  VPALLLIIGLLFLPESPRWLVEKG----RLEEAREVLAKLRGVPDV--------------  220

Query  172  TSQCFSEGRSPSQTEILQPATLNSHWHLTRKDITQYFWTEGNWRTLVGTALSWLLLDFGF  231
              +   E +   +                          + +W+ L  T      L    
Sbjct  221  -DRELDEIKDSLEAGQEA--------------------EKASWKELFSTKTRRQRL---L  256

Query  232  YGIGLSSPQFLAKTWGSLNIHGRAPVWKTDDDPNANVFDMF-MNSSIHALVILNIGSFVG  290
             G+ L   Q L     ++  +               +F+   ++ S    +I+ + +FV 
Sbjct  257  IGVMLQIFQQLT-GINAIFYYS------------TTIFENLGLSDSFLVTIIVGVVNFVF  303

Query  291  GLLMILCSHKIDRTALQKYGFLALAAHFIAVGTMFITVHKEGPVAVILYIIGQLL----F  346
              + I    +  R  L   G   +A  F+ +G + +    +   A I+ I+   L    F
Sbjct  304  TFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIVFIALFIAFF  363

Query  347  NFGPNATTYIIPAEVFPTRYRATCHGISAGAGKLGSILVQVFSSYYNFGTGPGEEPTIRH  406
              G     ++I +E+FP   R+    ++  A  L + L+      +   T       I  
Sbjct  364  AMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFL---FPIITD-----AIGL  415

Query  407  GWILIVFSACMILGAAVTHFWIP  429
            G+   +F+  ++L      F++P
Sbjct  416  GYTFFIFAGLLVLFIIFVFFFVP  438



Lambda      K        H        a         alpha
   0.325    0.139    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 591999806


Query= TCONS_00035091

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00035092

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         99.7    5e-23
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            65.9    3e-12


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 99.7 bits (249),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 83/466 (18%), Positives = 161/466 (35%), Gaps = 88/466 (19%)

Query  22   ATLAGTLFGQVLFGYLADRNGRKKMYGVELMLMITSTLGVVMSSTGENGSMDVFAWLVWW  81
                G   G +  G L DR GRKK        ++ + +  V+ +  +  +   ++     
Sbjct  54   IFSVGCFIGSLFAGKLGDRFGRKK-------SLLIANVLFVIGAVLQGAAKGKWSVYQLI  106

Query  82   --RLVVGVGVGADYPLSAVITSEFAPAKHRARMMASVFFMQPLGQIAGNIVTLIVVAVGK  139
              R++VG+GVG    L+ +  SE AP K R  + +        G +   I  L +     
Sbjct  107  VGRVLVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSN  166

Query  140  NQQHDDLIRTFDIMWRWVIGIGVVPGVIATLFRVVIPETPRFLLEIEDDPVKAEFDATTL  199
            +             WR  +G+ +VP ++  +  + +PE+PR+L+E      + E     L
Sbjct  167  SDG-----------WRIPLGLQLVPALLLIIGLLFLPESPRWLVEKG----RLEEAREVL  211

Query  200  FNETPSLDPEDTWRDLPMPAMSVTSQCFSEGRSPSQTEILQPATLNSHWHLTRKDITQYF  259
                   D                 +   E +   +                        
Sbjct  212  AKLRGVPDV---------------DRELDEIKDSLEAGQEA-------------------  237

Query  260  WTEGNWRTLVGTALSWLLLDFGFYGIGLSSPQFLAKTWGSLNIHGRAPVWKTDDDPNANV  319
              + +W+ L  T      L     G+ L   Q L     ++  +               +
Sbjct  238  -EKASWKELFSTKTRRQRL---LIGVMLQIFQQLT-GINAIFYYS------------TTI  280

Query  320  FDMF-MNSSIHALVILNIGSFVGGLLMILCSHKIDRTALQKYGFLALAAHFIAVGTMFIT  378
            F+   ++ S    +I+ + +FV   + I    +  R  L   G   +A  F+ +G + + 
Sbjct  281  FENLGLSDSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALL  340

Query  379  VHKEGPVAVILYIIGQLL----FNFGPNATTYIIPAEVFPTRYRATCHGISAGAGKLGSI  434
               +   A I+ I+   L    F  G     ++I +E+FP   R+    ++  A  L + 
Sbjct  341  GVSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANF  400

Query  435  LVQVFSSYYNFGTGPGEEPTIRHGWILIVFSACMILGAAVTHFWIP  480
            L+      +   T       I  G+   +F+  ++L      F++P
Sbjct  401  LIGFL---FPIITD-----AIGLGYTFFIFAGLLVLFIIFVFFFVP  438


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 65.9 bits (161),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 66/159 (42%), Gaps = 22/159 (14%)

Query  22   ATLAGTLFGQVLFGYLADRNGRKKMYGVELMLMITSTLGVVMSSTGENGSMDVFAWLVWW  81
                G    Q L G L+DR GR+++  + L+L     L ++ +S+           L+  
Sbjct  40   LFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASS--------LWLLLVL  91

Query  82   RLVVGVGVGADYPLSAVITSEFAPAKHRARMMASVFFMQPLGQIAGNIVTLIVVAVGKNQ  141
            R++ G+G GA +P +  + +++ P + R R +  V     LG   G ++  ++ ++    
Sbjct  92   RVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASL----  147

Query  142  QHDDLIRTFDIMWRWVIGIGVVPGVIATLFRVVIPETPR  180
                        WR    I  +  ++A +  ++    P 
Sbjct  148  ----------FGWRAAFLILAILSLLAAVLLLLPRPPPE  176



Lambda      K        H        a         alpha
   0.324    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00030614

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         106     5e-25
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            67.1    2e-12


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 106 bits (266),  Expect = 5e-25, Method: Composition-based stats.
 Identities = 94/519 (18%), Positives = 179/519 (34%), Gaps = 96/519 (18%)

Query  17   VVFVAGVGFFLDGYTLFASNMALPMVSYVY---WQNNLSSKKLTYINI-----ATLAGTL  68
            V  VA +G FL GY        L ++ +        ++SS     +           G  
Sbjct  1    VALVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCF  60

Query  69   FGQVLFGYLADRNGRKKMYGVELMLMITSTLGVVMSSTGENGSMDVFAWLVWW--RLVVG  126
             G +  G L DR GRKK        ++ + +  V+ +  +  +   ++       R++VG
Sbjct  61   IGSLFAGKLGDRFGRKK-------SLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVG  113

Query  127  VGVGADYPLSAVITSEFAPAKHRARMMASVFFMQPLGQIAGNIVTLIVVAVGKNQQHDDL  186
            +GVG    L+ +  SE AP K R  + +        G +   I  L +     +      
Sbjct  114  IGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSNSDG----  169

Query  187  IRTFDIMWRWVIGIGVVPGVIATLFRVVIPETPRFLLEIEDDPVKAEFDATTLFNETPSL  246
                   WR  +G+ +VP ++  +  + +PE+PR+L+E      + E     L       
Sbjct  170  -------WRIPLGLQLVPALLLIIGLLFLPESPRWLVEKG----RLEEAREVLAKLRGVP  218

Query  247  DPEDTWRDLPMPAMSVTSQCFSEGRSPSQTEILQPATLNSHWHLTRKDITQYFWTEGNWR  306
            D                 +   E +   +                          + +W+
Sbjct  219  DV---------------DRELDEIKDSLEAGQEA--------------------EKASWK  243

Query  307  TLVGTALSWLLLDFGFYGIGLSSPQFLAKTWGSLNIHGRAPVWKTDDDPNANVFDMF-MN  365
             L  T      L     G+ L   Q L     ++  +               +F+   ++
Sbjct  244  ELFSTKTRRQRL---LIGVMLQIFQQLT-GINAIFYYS------------TTIFENLGLS  287

Query  366  SSIHALVILNIGSFVGGLLMILCSHKIDRTALQKYGFLALAAHFIAVGTMFITVHKEGPV  425
             S    +I+ + +FV   + I    +  R  L   G   +A  F+ +G + +    +   
Sbjct  288  DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDW  347

Query  426  AVILYIIGQLL----FNFGPNATTYIIPAEVFPTRYRATCHGISAGAGKLGSILVQVFSS  481
            A I+ I+   L    F  G     ++I +E+FP   R+    ++  A  L + L+     
Sbjct  348  AGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFL--  405

Query  482  YYNFGTGPGEEPTIRHGWILIVFSACMILGAAVTHFWIP  520
             +   T       I  G+   +F+  ++L      F++P
Sbjct  406  -FPIITD-----AIGLGYTFFIFAGLLVLFIIFVFFFVP  438


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 67.1 bits (164),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 28/200 (14%)

Query  23   VGFFLDGYTLFASNMALPMVSYVYWQNNLSSKKLTYINIATL--AGTLFGQVLFGYLADR  80
            +  FL          ALP+        +L         + TL   G    Q L G L+DR
Sbjct  3    LAAFLAALGRSLLGPALPL----LLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDR  58

Query  81   NGRKKMYGVELMLMITSTLGVVMSSTGENGSMDVFAWLVWWRLVVGVGVGADYPLSAVIT  140
             GR+++  + L+L     L ++ +S+           L+  R++ G+G GA +P +  + 
Sbjct  59   FGRRRVLLIGLLLFALGLLLLLFASS--------LWLLLVLRVLQGLGAGALFPAALALI  110

Query  141  SEFAPAKHRARMMASVFFMQPLGQIAGNIVTLIVVAVGKNQQHDDLIRTFDIMWRWVIGI  200
            +++ P + R R +  V     LG   G ++  ++ ++                WR    I
Sbjct  111  ADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASL--------------FGWRAAFLI  156

Query  201  GVVPGVIATLFRVVIPETPR  220
              +  ++A +  ++    P 
Sbjct  157  LAILSLLAAVLLLLPRPPPE  176



Lambda      K        H        a         alpha
   0.325    0.139    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 718819868


Query= TCONS_00030616

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00030619

Length=626
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like...  82.9    4e-17
CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide...  64.2    1e-11


>CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This 
family includes FMO proteins, cyclohexanone mono-oxygenase 
and a number of different mono-oxygenases.
Length=531

 Score = 82.9 bits (205),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 98/367 (27%), Positives = 137/367 (37%), Gaps = 65/367 (18%)

Query  208  VLVVGAGQSGLTVAARLKMLNVDTLVIDEEDRIGDNWR----------RRYHQLVLHDPV  257
            V V+GAG SGL          ++    +  D IG  WR            Y  ++ +   
Sbjct  4    VAVIGAGVSGLASIKCCLEEGLEPTCFERSDDIGGLWRFTENVEEGRASIYKSVITNTSK  63

Query  258  WFDHMPYLPFPSSWPVFTPKDKLAEFFEAYAKLLEL--NVWTRTTLKSSSWSDD---KKQ  312
                    PFP  +P F    K  E+F  +AK  +L   +  +TT+ S     D     Q
Sbjct  64   EMSCFSDFPFPEDYPNFMHNSKFLEYFRMFAKEFDLLKYIQFKTTVCSVKKRPDFSTSGQ  123

Query  313  WTVFLERRRADGSVESRTFHPQHVIQATGHSGKKSLP--RFKGMESFKGDRLCHSSDFTE  370
            W V  E    +G  ES  F    V+  TGH     LP   F G+E FKG    HS D+  
Sbjct  124  WEVVTEH---EGKQESAVF--DAVMVCTGHHTNPHLPLESFPGIEKFKGQYF-HSRDYK-  176

Query  371  ANPAS-KGKKAVVVGSGNSGHDIAQEFYEKGYDVSMVQRSTTCVISSESIVEIGLKSLYG  429
             +P    GK+ +V+G GNSG DIA E       V +  R  + V+S              
Sbjct  177  -HPEGFTGKRVLVIGIGNSGGDIAVELSHTAAQVFLSTRRGSWVLSR-----------VS  224

Query  430  EGGPP------TEDSDLYLWSIPTELFKAQQIKVTAAQNQRDAAILQALDKAGFKLDMGS  483
            + G P      T  +      +PT +      K     N+R        +   + L    
Sbjct  225  DHGYPWDMLFSTRFTSFLRNILPTSISNWLMEK---QMNRR-------FNHENYGL---K  271

Query  484  DNAGLLMKYLSRGGGYYIDVGGSRLIADGKIKVKQGQEITEVLPHGLQFADGTQLEA-DE  542
                 L K          D   +R++  G +KVK    + E       F DGT  E  D 
Sbjct  272  PKNRALSKEPVVN-----DDLPNRILC-GAVKVK--PNVKEFTETSAIFEDGTVEEDIDV  323

Query  543  IVFATGY  549
            ++FATGY
Sbjct  324  VIFATGY  330


>CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase. 
 
Length=296

 Score = 64.2 bits (157),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 81/208 (39%), Gaps = 36/208 (17%)

Query  217  GLTVAARLKMLNVDTLVIDEEDRIGDNWRRRYHQLVLHDPVWFDH---MPYLPF--PSSW  271
            G+  A  LK   ++  +I E+  IG+++ R    +    P +  +   +P L    P + 
Sbjct  3    GIGCAIALKKAGLEDYLILEKGNIGNSFYRYPTHMTFFSPSFTSNGFGIPDLNAISPGTS  62

Query  272  PVFTPKDK------LAEFFEAYAKLLELNVWTRTTLKSSSWSDDKKQWTVFLERRRADGS  325
            P FT   +       AE+    A   EL +     + S      KK+   F         
Sbjct  63   PAFTFNREHPSGNEYAEYLRRVADHFELPINLFEEVTSV-----KKEDDGF--------V  109

Query  326  VESR--TFHPQHVIQATGHSGKKSLPRFKGMESFKGDRLC-HSSDFTEANPASKGKKAVV  382
            V +   T+  ++VI ATG     +              L  H S   + +P   G+K VV
Sbjct  110  VTTSKGTYQARYVIIATGEFDFPNKLGVPE--------LPKHYSYVKDFHP-YAGQKVVV  160

Query  383  VGSGNSGHDIAQEFYEKGYDVSMVQRST  410
            +G  NS  D A E   KG  V+++ R +
Sbjct  161  IGGYNSAVDAALELVRKGARVTVLYRGS  188



Lambda      K        H        a         alpha
   0.318    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 786063070


Query= TCONS_00035093

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like...  78.3    3e-16


>CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This 
family includes FMO proteins, cyclohexanone mono-oxygenase 
and a number of different mono-oxygenases.
Length=531

 Score = 78.3 bits (193),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 116/299 (39%), Gaps = 55/299 (18%)

Query  41   PFPSSWPVFTPKDKLAEFFEAYAKLLEL--NVWTRTTLKSSSWSDD---KKQWTVFLERR  95
            PFP  +P F    K  E+F  +AK  +L   +  +TT+ S     D     QW V  E  
Sbjct  72   PFPEDYPNFMHNSKFLEYFRMFAKEFDLLKYIQFKTTVCSVKKRPDFSTSGQWEVVTEH-  130

Query  96   RADGSVESRTFHPQHVIQATGHSGKKSLP--RFKGMESFKGDRLCHSSDFTEANPAS-KG  152
              +G  ES  F    V+  TGH     LP   F G+E FKG    HS D+   +P    G
Sbjct  131  --EGKQESAVF--DAVMVCTGHHTNPHLPLESFPGIEKFKGQYF-HSRDYK--HPEGFTG  183

Query  153  KKAVVVGSGNSGHDIAQEFYEKGYDVSMVQRSTTCVISSESIVEIGLKSLYGEGGPP---  209
            K+ +V+G GNSG DIA E       V +  R  + V+S              + G P   
Sbjct  184  KRVLVIGIGNSGGDIAVELSHTAAQVFLSTRRGSWVLSR-----------VSDHGYPWDM  232

Query  210  ---TEDSDLYLWSIPTELFKAQQIKVTAAQNQRDAAILQALDKAGFKLDMGSDNAGLLMK  266
               T  +      +PT +      K     N+R        +   + L         L K
Sbjct  233  LFSTRFTSFLRNILPTSISNWLMEK---QMNRR-------FNHENYGL---KPKNRALSK  279

Query  267  YLSRGGGYYIDVGGSRLIADGKIKVKQGQEITEVLPHGLQFADGTQLEA-DEIVFATGY  324
                      D   +R++  G +KVK    + E       F DGT  E  D ++FATGY
Sbjct  280  EPVVN-----DDLPNRILC-GAVKVK--PNVKEFTETSAIFEDGTVEEDIDVVIFATGY  330



Lambda      K        H        a         alpha
   0.318    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00030620

Length=626
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like...  82.9    4e-17
CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide...  64.2    1e-11


>CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This 
family includes FMO proteins, cyclohexanone mono-oxygenase 
and a number of different mono-oxygenases.
Length=531

 Score = 82.9 bits (205),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 98/367 (27%), Positives = 137/367 (37%), Gaps = 65/367 (18%)

Query  208  VLVVGAGQSGLTVAARLKMLNVDTLVIDEEDRIGDNWR----------RRYHQLVLHDPV  257
            V V+GAG SGL          ++    +  D IG  WR            Y  ++ +   
Sbjct  4    VAVIGAGVSGLASIKCCLEEGLEPTCFERSDDIGGLWRFTENVEEGRASIYKSVITNTSK  63

Query  258  WFDHMPYLPFPSSWPVFTPKDKLAEFFEAYAKLLEL--NVWTRTTLKSSSWSDD---KKQ  312
                    PFP  +P F    K  E+F  +AK  +L   +  +TT+ S     D     Q
Sbjct  64   EMSCFSDFPFPEDYPNFMHNSKFLEYFRMFAKEFDLLKYIQFKTTVCSVKKRPDFSTSGQ  123

Query  313  WTVFLERRRADGSVESRTFHPQHVIQATGHSGKKSLP--RFKGMESFKGDRLCHSSDFTE  370
            W V  E    +G  ES  F    V+  TGH     LP   F G+E FKG    HS D+  
Sbjct  124  WEVVTEH---EGKQESAVF--DAVMVCTGHHTNPHLPLESFPGIEKFKGQYF-HSRDYK-  176

Query  371  ANPAS-KGKKAVVVGSGNSGHDIAQEFYEKGYDVSMVQRSTTCVISSESIVEIGLKSLYG  429
             +P    GK+ +V+G GNSG DIA E       V +  R  + V+S              
Sbjct  177  -HPEGFTGKRVLVIGIGNSGGDIAVELSHTAAQVFLSTRRGSWVLSR-----------VS  224

Query  430  EGGPP------TEDSDLYLWSIPTELFKAQQIKVTAAQNQRDAAILQALDKAGFKLDMGS  483
            + G P      T  +      +PT +      K     N+R        +   + L    
Sbjct  225  DHGYPWDMLFSTRFTSFLRNILPTSISNWLMEK---QMNRR-------FNHENYGL---K  271

Query  484  DNAGLLMKYLSRGGGYYIDVGGSRLIADGKIKVKQGQEITEVLPHGLQFADGTQLEA-DE  542
                 L K          D   +R++  G +KVK    + E       F DGT  E  D 
Sbjct  272  PKNRALSKEPVVN-----DDLPNRILC-GAVKVK--PNVKEFTETSAIFEDGTVEEDIDV  323

Query  543  IVFATGY  549
            ++FATGY
Sbjct  324  VIFATGY  330


>CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase. 
 
Length=296

 Score = 64.2 bits (157),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 81/208 (39%), Gaps = 36/208 (17%)

Query  217  GLTVAARLKMLNVDTLVIDEEDRIGDNWRRRYHQLVLHDPVWFDH---MPYLPF--PSSW  271
            G+  A  LK   ++  +I E+  IG+++ R    +    P +  +   +P L    P + 
Sbjct  3    GIGCAIALKKAGLEDYLILEKGNIGNSFYRYPTHMTFFSPSFTSNGFGIPDLNAISPGTS  62

Query  272  PVFTPKDK------LAEFFEAYAKLLELNVWTRTTLKSSSWSDDKKQWTVFLERRRADGS  325
            P FT   +       AE+    A   EL +     + S      KK+   F         
Sbjct  63   PAFTFNREHPSGNEYAEYLRRVADHFELPINLFEEVTSV-----KKEDDGF--------V  109

Query  326  VESR--TFHPQHVIQATGHSGKKSLPRFKGMESFKGDRLC-HSSDFTEANPASKGKKAVV  382
            V +   T+  ++VI ATG     +              L  H S   + +P   G+K VV
Sbjct  110  VTTSKGTYQARYVIIATGEFDFPNKLGVPE--------LPKHYSYVKDFHP-YAGQKVVV  160

Query  383  VGSGNSGHDIAQEFYEKGYDVSMVQRST  410
            +G  NS  D A E   KG  V+++ R +
Sbjct  161  IGGYNSAVDAALELVRKGARVTVLYRGS  188



Lambda      K        H        a         alpha
   0.318    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0602    0.140     1.90     42.6     43.6 

Effective search space used: 786063070


Query= TCONS_00030621

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.126    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00030622

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00030623

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00030630

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00035095

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00035096

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00030632

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00035097

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00035098

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00030636

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00030633

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00030634

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.148    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00030635

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00030638

Length=672


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 853903410


Query= TCONS_00030637

Length=672


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 853903410


Query= TCONS_00030639

Length=631


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 793437020


Query= TCONS_00030640

Length=652


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 824407610


Query= TCONS_00035099

Length=659


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 834731140


Query= TCONS_00030624

Length=872
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies)               75.9    3e-17


>CDD:463710 pfam12796, Ank_2, Ankyrin repeats (3 copies).  
Length=91

 Score = 75.9 bits (187),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query  220  NCEIIRLLVEFGWDPLAQLGMGGLPLHIAAQTGRADLVRLLLSYGADVNARNGQHATPLH  279
            N E+++LL+E G D   Q   G   LH+AA+ G  ++V+LLL + ADVN ++    T LH
Sbjct  9    NLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKDNGR-TALH  66

Query  280  LACANGQLGAVELLLNRGADANA  302
             A  +G L  V+LLL +GAD N 
Sbjct  67   YAARSGHLEIVKLLLEKGADINV  89


 Score = 67.1 bits (164),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 41/75 (55%), Gaps = 2/75 (3%)

Query  245  LHIAAQTGRADLVRLLLSYGADVNARNGQHATPLHLACANGQLGAVELLLNRGADANAAT  304
            LH+AA+ G  +LV+LLL  GAD N ++    T LHLA  NG L  V+LLL   AD N   
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEH-ADVN-LK  58

Query  305  LFRETPLHQCMRFGS  319
                T LH   R G 
Sbjct  59   DNGRTALHYAARSGH  73


 Score = 65.1 bits (159),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query  498  LHYAATNDRYKSIPPLLEAGTPIEARDNHGDTALLIAARSSCEGTRELLKRGANVNACDR  557
            LH AA N   + +  LLE G     +D +G TAL +AA++      +LL   A+VN  D 
Sbjct  1    LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNLKD-  59

Query  558  RGRTPLHHCSSHTDSEICTMLKDAGADITAKD  589
             GRT LH+ +     EI  +L + GADI  KD
Sbjct  60   NGRTALHYAARSGHLEIVKLLLEKGADINVKD  91


 Score = 58.6 bits (142),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 50/91 (55%), Gaps = 3/91 (3%)

Query  434  AIAYNRTEALKFLLESGADVSRLRQDGISLLHDAATHSAMPRLITCLLDYGADPLAITSD  493
            A      E +K LLE+GAD +   ++G + LH AA +  +  ++  LL++    + +  +
Sbjct  4    AAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLE-IVKLLLEHAD--VNLKDN  60

Query  494  GKTALHYAATNDRYKSIPPLLEAGTPIEARD  524
            G+TALHYAA +   + +  LLE G  I  +D
Sbjct  61   GRTALHYAARSGHLEIVKLLLEKGADINVKD  91



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1115394378


Query= TCONS_00035094

Length=215


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00030625

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00030626

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00030627

Length=635
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395744 pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N...  380     3e-128
CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family      153     1e-43 


>CDD:395744 pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal 
region.  This family is an alignment of the region to the 
N-terminal side of the active site. The Prosite motif does 
not correspond to this Pfam entry.
Length=352

 Score = 380 bits (977),  Expect = 3e-128, Method: Composition-based stats.
 Identities = 146/331 (44%), Positives = 201/331 (61%), Gaps = 16/331 (5%)

Query  2    KLRPLAPDQSGDIQYAQWTPTGDAIAFVRDNNVFVWTNAS--TSQITNDGGPDLFNGVPD  59
            ++ PL P + G IQ A+W+P GD +AFVRDNN++V   A+    QIT+DG   +FNGV D
Sbjct  34   RVEPLPPGE-GKIQDAKWSPDGDRLAFVRDNNLYVRELATGKEIQITSDGSDGIFNGVAD  92

Query  60   WIYEEEILGDRFALWFSPDGAYLAFLRFNETGVPTFTVPYYMDNEEIAPPYPRELELRYP  119
            W+YEEE+LG   A+W+SPDG+ LAFLRF+E+ VP  T+PYY D      P P   E++YP
Sbjct  93   WVYEEEVLGSNSAVWWSPDGSRLAFLRFDESEVPIITLPYYTDEG----PGPEVREIKYP  148

Query  120  KVSQTNPTVELNLLELRTGE-RTPVPIDAFDAKELIIGEVAWLTGKHDVVAVKAFNRVQD  178
            K    NPTVEL + +L +G+    VP D     +  I  V W+      + V+  NR Q+
Sbjct  149  KAGAPNPTVELFVYDLASGKTVEVVPPDDLSDADYYITRVKWVPDGK--LLVQWLNRDQN  206

Query  179  RQKVVAVDVASLRSKTISERDGTDGWLDNLLSMAYIGPIGESKEEYYIDISDQSGWAHLW  238
            R KVV  D  + R+  I E + +DGW++      +I          ++ IS++ G+ HL+
Sbjct  207  RLKVVLCDAETGRTVVILE-ETSDGWVELHQDPHFIKR----DGSGFLWISERDGYNHLY  261

Query  239  LFPVAGGEPIALTKGEWEVTNILSIDKPRQLVYFLSTKHHSTERHLYSVSWKTK-EITPL  297
            L+ + G  PI LT G WEVT+IL +D+ R LVYF +T+   TERHLYSVS  +  E T L
Sbjct  262  LYDLDGKSPIQLTSGNWEVTSILGVDETRDLVYFTATEDSPTERHLYSVSLDSGGEPTCL  321

Query  298  VDDTVPAVWSASFSSQGGYYILSYRGPDVPY  328
             DD+    +SASFS  G YY+L+Y GPD P 
Sbjct  322  TDDSGDHDYSASFSPNGSYYVLTYSGPDTPP  352


>CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.  
Length=213

 Score = 153 bits (389),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 88/207 (43%), Gaps = 15/207 (7%)

Query  412  LDFKAYIASDPELEYITWTVDNRGTGYKGRAFRCQVASRLGELEAADQVFAAQQAAKLPY  471
              + A + +D    Y+    + RG+G  G AF       LG+ E  D + AA+   +  Y
Sbjct  3    FSWNAQLLAD--RGYVVAIANGRGSGGYGEAFHDAGKGDLGQNEFDDFIAAAEYLIEQGY  60

Query  472  VDAQHIAIWGWSYGGYLTGKVIETDSGAFSLGVQTAPVSDWRFYDSM----YTERYMKTL  527
             D   +AIWG SYGGYLTG  +      F   V   PV DW  Y S     +TERYM+  
Sbjct  61   TDPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAHVPVVDWLAYMSDTSLPFTERYMEWG  120

Query  528  --ESNAAGYNASAIRKVAGYKNVR--GGVLIQHGTGDDNVHFQNAAALVDTLVGAGVTPE  583
                N  GY+  +    +   NV+    +L+ HG  DD V    +  LV  L   GV   
Sbjct  121  NPWDNEEGYDYLS--PYSPADNVKVYPPLLLIHGLLDDRVPPWQSLKLVAALQRKGVP--  176

Query  584  KLQVQWFTDSDHGIRYHGGNVFLYRQL  610
               +  F D  HGI      V  Y + 
Sbjct  177  -FLLLIFPDEGHGIGKPRNKVEEYARE  202



Lambda      K        H        a         alpha
   0.317    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 799336180


Query= TCONS_00030628

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family      149     4e-45


>CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.  
Length=213

 Score = 149 bits (378),  Expect = 4e-45, Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 88/207 (43%), Gaps = 15/207 (7%)

Query  36   LDFKAYIASDPELEYITWTVDNRGTGYKGRAFRCQVASRLGELEAADQVFAAQQAAKLPY  95
              + A + +D    Y+    + RG+G  G AF       LG+ E  D + AA+   +  Y
Sbjct  3    FSWNAQLLAD--RGYVVAIANGRGSGGYGEAFHDAGKGDLGQNEFDDFIAAAEYLIEQGY  60

Query  96   VDAQHIAIWGWSYGGYLTGKVIETDSGAFSLGVQTAPVSDWRFYDSM----YTERYMKTL  151
             D   +AIWG SYGGYLTG  +      F   V   PV DW  Y S     +TERYM+  
Sbjct  61   TDPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAHVPVVDWLAYMSDTSLPFTERYMEWG  120

Query  152  --ESNAAGYNASAIRKVAGYKNVR--GGVLIQHGTGDDNVHFQNAAALVDTLVGAGVTPE  207
                N  GY+  +    +   NV+    +L+ HG  DD V    +  LV  L   GV   
Sbjct  121  NPWDNEEGYDYLS--PYSPADNVKVYPPLLLIHGLLDDRVPPWQSLKLVAALQRKGVP--  176

Query  208  KLQVQWFTDSDHGIRYHGGNVFLYRQL  234
               +  F D  HGI      V  Y + 
Sbjct  177  -FLLLIFPDEGHGIGKPRNKVEEYARE  202



Lambda      K        H        a         alpha
   0.317    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00030629

Length=765
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395744 pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N...  422     3e-143
CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family      153     3e-43 


>CDD:395744 pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal 
region.  This family is an alignment of the region to the 
N-terminal side of the active site. The Prosite motif does 
not correspond to this Pfam entry.
Length=352

 Score = 422 bits (1088),  Expect = 3e-143, Method: Composition-based stats.
 Identities = 163/364 (45%), Positives = 225/364 (62%), Gaps = 16/364 (4%)

Query  99   HPNLSSVLWATNYTKQYRHSYFADYFIQDVQSMKLRPLAPDQSGDIQYAQWTPTGDAIAF  158
             P+   +L ATNYTK +RHSY ADY+I D+++ ++ PL P + G IQ A+W+P GD +AF
Sbjct  1    SPDGKYLLLATNYTKNWRHSYTADYYIYDLETNRVEPLPPGE-GKIQDAKWSPDGDRLAF  59

Query  159  VRDNNVFVWTNAS--TSQITNDGGPDLFNGVPDWIYEEEILGDRFALWFSPDGAYLAFLR  216
            VRDNN++V   A+    QIT+DG   +FNGV DW+YEEE+LG   A+W+SPDG+ LAFLR
Sbjct  60   VRDNNLYVRELATGKEIQITSDGSDGIFNGVADWVYEEEVLGSNSAVWWSPDGSRLAFLR  119

Query  217  FNETGVPTFTVPYYMDNEEIAPPYPRELELRYPKVSQTNPTVELNLLELRTGE-RTPVPI  275
            F+E+ VP  T+PYY D      P P   E++YPK    NPTVEL + +L +G+    VP 
Sbjct  120  FDESEVPIITLPYYTDEG----PGPEVREIKYPKAGAPNPTVELFVYDLASGKTVEVVPP  175

Query  276  DAFDAKELIIGEVAWLTGKHDVVAVKAFNRVQDRQKVVAVDVASLRSKTISERDGTDGWL  335
            D     +  I  V W+      + V+  NR Q+R KVV  D  + R+  I E + +DGW+
Sbjct  176  DDLSDADYYITRVKWVPDGK--LLVQWLNRDQNRLKVVLCDAETGRTVVILE-ETSDGWV  232

Query  336  DNLLSMAYIGPIGESKEEYYIDISDQSGWAHLWLFPVAGGEPIALTKGEWEVTNILSIDK  395
            +      +I          ++ IS++ G+ HL+L+ + G  PI LT G WEVT+IL +D+
Sbjct  233  ELHQDPHFIKR----DGSGFLWISERDGYNHLYLYDLDGKSPIQLTSGNWEVTSILGVDE  288

Query  396  PRQLVYFLSTKHHSTERHLYSVSWKTK-EITPLVDDTVPAVWSASFSSQGGYYILSYRGP  454
             R LVYF +T+   TERHLYSVS  +  E T L DD+    +SASFS  G YY+L+Y GP
Sbjct  289  TRDLVYFTATEDSPTERHLYSVSLDSGGEPTCLTDDSGDHDYSASFSPNGSYYVLTYSGP  348

Query  455  DVPY  458
            D P 
Sbjct  349  DTPP  352


>CDD:459761 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.  
Length=213

 Score = 153 bits (390),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 88/207 (43%), Gaps = 15/207 (7%)

Query  542  LDFKAYIASDPELEYITWTVDNRGTGYKGRAFRCQVASRLGELEAADQVFAAQQAAKLPY  601
              + A + +D    Y+    + RG+G  G AF       LG+ E  D + AA+   +  Y
Sbjct  3    FSWNAQLLAD--RGYVVAIANGRGSGGYGEAFHDAGKGDLGQNEFDDFIAAAEYLIEQGY  60

Query  602  VDAQHIAIWGWSYGGYLTGKVIETDSGAFSLGVQTAPVSDWRFYDSM----YTERYMKTL  657
             D   +AIWG SYGGYLTG  +      F   V   PV DW  Y S     +TERYM+  
Sbjct  61   TDPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAHVPVVDWLAYMSDTSLPFTERYMEWG  120

Query  658  --ESNAAGYNASAIRKVAGYKNVR--GGVLIQHGTGDDNVHFQNAAALVDTLVGAGVTPE  713
                N  GY+  +    +   NV+    +L+ HG  DD V    +  LV  L   GV   
Sbjct  121  NPWDNEEGYDYLS--PYSPADNVKVYPPLLLIHGLLDDRVPPWQSLKLVAALQRKGVP--  176

Query  714  KLQVQWFTDSDHGIRYHGGNVFLYRQL  740
               +  F D  HGI      V  Y + 
Sbjct  177  -FLLLIFPDEGHGIGKPRNKVEEYARE  202



Lambda      K        H        a         alpha
   0.317    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 976406992


Query= TCONS_00030641

Length=638


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 803760550


Query= TCONS_00030642

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00030643

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  137     2e-39


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 137 bits (347),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 81/239 (34%), Positives = 124/239 (52%), Gaps = 11/239 (5%)

Query  15   NFSPQWFVMPQGTAIISVILHQLHYQFGALRILAKIVWIYTIVLLAMTLFLYILRLIRYP  74
            +F+P WF +  GT  ++++LH L Y  G LR +  I++I  +VL  + L LY+LR I YP
Sbjct  1    HFTPAWFAIVMGTGGLALLLHHLPYGRG-LRTIGLILFILNLVLFLLLLLLYLLRFILYP  59

Query  75   REVCDELRHNLIETSCLASIVITYTTIVQMVALQYGSTHGVAIGVYVLWW-IAAFLSTLA  133
              V  ELRH  +E+  L +  + + TI+  + L       +    +VLWW I   L+   
Sbjct  60   EAVRAELRHP-VESLFLGTFPMGFATIINGLVLVPVPGPWLVTLAWVLWWWIGVALALAF  118

Query  134  VIGIPFVQLKVQPSSFERIPPAILLPVIAALTCAAGGGVICTSTALSPRLQVPVIIVAYL  193
             +G+PF+         E + PA LLPV+  +  AA G ++         L +P+++V+YL
Sbjct  119  AVGVPFLLFTRHHL-LEAMTPAWLLPVVPLMVVAALGALLA-------ALLLPILVVSYL  170

Query  194  LVGAGISLALGFDAVILFQHFSDQQPSPQKVWQDMILCGPFGQGGFALQILGGAVQKSF  252
            L G G+ LAL   A+ L++ F+   P  +      I  GP GQG  AL +LGGA     
Sbjct  171  LWGLGLFLALVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTIL  229



Lambda      K        H        a         alpha
   0.330    0.143    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00030644

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel. Thi...  199     2e-61


>CDD:460983 pfam03595, SLAC1, Voltage-dependent anion channel.  This family 
of transporters has ten alpha helical transmembrane segments. 
The structure of a bacterial homolog of SLAC1 shows it 
to have a trimeric arrangement. The pore is composed of five 
helices with a conserved Phe residue involved in gating. One 
homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions 
as a malate uptake transporter; another, Ssu1 from Saccharomyces 
cerevisiae and other fungi including Aspergillus 
fumigatus, is characterized as a sulfite efflux pump; and 
TehA from Escherichia coli is identified as a tellurite resistance 
protein by virtue of its association in the tehA/tehB 
operon. In plants, this family is found in the stomatal guard 
cells functioning as an anion-transporting pore. Many homologs 
are incorrectly annotated as tellurite resistance or dicarboxylate 
transporter (TDT) proteins.
Length=321

 Score = 199 bits (508),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 113/333 (34%), Positives = 167/333 (50%), Gaps = 22/333 (7%)

Query  15   NFSPQWFVMPQGTAIISVILHQLHYQFGALRILAKIVWIYTIVLLAMTLFLYILRLIRYP  74
            +F+P WF +  GT  ++++LH L Y  G LR +  I++I  +VL  + L LY+LR I YP
Sbjct  1    HFTPAWFAIVMGTGGLALLLHHLPYGRG-LRTIGLILFILNLVLFLLLLLLYLLRFILYP  59

Query  75   REVCDELRHNLIETSCLASIVITYTTIVQMVALQYGSTHGVAIGVYVLWW-IAAFLSTLA  133
              V  ELRH  +E+  L +  + + TI+  + L       +    +VLWW I   L+   
Sbjct  60   EAVRAELRHP-VESLFLGTFPMGFATIINGLVLVPVPGPWLVTLAWVLWWWIGVALALAF  118

Query  134  VIGIPFVQLKVQPSSFERIPPAILLPVIAALTCAAGGGVICTSTALSPRLQVPVIIVAYL  193
             +G+PF+         E + PA LLPV+  +  AA G ++         L +P+++V+YL
Sbjct  119  AVGVPFLLFTRHHL-LEAMTPAWLLPVVPLMVVAALGALLA-------ALLLPILVVSYL  170

Query  194  LVGAGISLALGFDAVILFQHFSDQQPSPQKVWQDMILCGPFGQGGFALQILGGAVQKSFP  253
            L G G+ LAL   A+ L++ F+   P  +      I  GP GQG  AL +LGGA     P
Sbjct  171  LWGLGLFLALVILAIYLYRLFTHGLPPAELRPSLFIPLGPPGQGALALLLLGGAAPTILP  230

Query  254  AYARGTLLRAQAAGPIAAVSQFAGLLSWGFATFWWCFAILSILHTLAAQPGGFKSTTFSL  313
            A      L A A   +  V+    L  WGF  +W+  A LS+L  L           F+L
Sbjct  231  A------LTALAGEILYVVALLLALFLWGFGLWWFFIAALSVLSAL-----RRGGLPFNL  279

Query  314  GAWSLVFPWGVYTNCAVQLGKIMDSPAFDVWST  346
            G W+  FP G +    ++LGK +DSP F V  T
Sbjct  280  GWWAFTFPLGAFALATIELGKALDSPFFRVLGT  312



Lambda      K        H        a         alpha
   0.328    0.141    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00035100

Length=811
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  101     4e-25
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  93.1    2e-23
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  62.2    1e-11


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 101 bits (253),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 60/201 (30%), Positives = 96/201 (48%), Gaps = 31/201 (15%)

Query  595  PLAPVEILWIIMITSGMPDMGLGMEVAAPDIMARPPQ-TKQGIFTGEVVVDIVVYGVWTA  653
            PL P++ILWI ++T G+P + LG E   PD+M RPP+  K+ +F+ +++  I++ G+  A
Sbjct  3    PLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLLIA  62

Query  654  ALCLASFSVVVWGFGDGHLARGCNREYSAECDLVFRARATTFVCLTWFALFLAWEMVDMR  713
             L L  F + + GFG                     A+   F  L    LF A     +R
Sbjct  63   ILTLLVFFLGLLGFGISESQ---------------NAQTMAFNTLVLSQLFNALNARSLR  107

Query  714  RSFFRMQPGSTRYLTQWMSDVWRNQFLFWSIVAGFVTTFPILYIPVLNHVVFKHTGISW-  772
            RS F++              ++ N+ L  +I+   +    I+Y+P L   VF  T +S  
Sbjct  108  RSLFKI-------------GLFSNKLLLLAILLSLLLQLLIIYVPPLQA-VFGTTPLSLE  153

Query  773  EWGIVFVEAVLFFLGVELWKF  793
            +W IV + A++  L VEL K 
Sbjct  154  QWLIVLLLALVVLLVVELRKL  174


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 93.1 bits (232),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query  229  AMANLSHV-YRSDDGEWHARGEPTEIAIQVFAARFNWNRDRWTKGERPVWHQKAEFPFDS  287
            A+ N +      + G+W   G+PTE A+ VFA +         +  R  + + AE PF+S
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEKMG----IDVEELRKDYPRVAEIPFNS  56

Query  288  TVKKMSVIFSRFDGDGGTERSMVFTKGAVERILDACTTV  326
              K+MS +    D      +  +F KGA E ILD CTT+
Sbjct  57   DRKRMSTVHKLPDDG----KYRLFVKGAPEIILDRCTTI  91


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 62.2 bits (151),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 62/173 (36%), Gaps = 28/173 (16%)

Query  346  LQNMEELARLGLRVLALAHKPYAPSTRLLEDADLPRDEIERDLCFLGLIGLYDPPRPETA  405
            +++      LG R               LE        +  +L  +  +       P  A
Sbjct  47   VEDFTARLLLGKRDWLEELDILRGLVETLEAEG--LTVVLVELLGVIALADELKLYPGAA  104

Query  406  GAIRACAQAGIAVHMVTGDHPGTATAIAQQVGILPSDLGSVAADVADAMVMTAGQFDKLT  465
             A++A  + GI V ++TGD+P  A A+ + +G+       ++ D                
Sbjct  105  EALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFDVVISGDD---------------  149

Query  466  DREVDALPTLPLVIARCAPQTKVRMIDALHRRGQFAAMTGDGVNDSPSLKHAD  518
                       + + +  P+  +  ++ L  + +   M GDGVND P+ K A 
Sbjct  150  -----------VGVGKPKPEIYLAALERLGVKPEEVLMVGDGVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.323    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1043343984


Query= TCONS_00030645

Length=811
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  101     4e-25
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  93.1    2e-23
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  62.2    1e-11


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 101 bits (253),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 60/201 (30%), Positives = 96/201 (48%), Gaps = 31/201 (15%)

Query  595  PLAPVEILWIIMITSGMPDMGLGMEVAAPDIMARPPQ-TKQGIFTGEVVVDIVVYGVWTA  653
            PL P++ILWI ++T G+P + LG E   PD+M RPP+  K+ +F+ +++  I++ G+  A
Sbjct  3    PLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLLIA  62

Query  654  ALCLASFSVVVWGFGDGHLARGCNREYSAECDLVFRARATTFVCLTWFALFLAWEMVDMR  713
             L L  F + + GFG                     A+   F  L    LF A     +R
Sbjct  63   ILTLLVFFLGLLGFGISESQ---------------NAQTMAFNTLVLSQLFNALNARSLR  107

Query  714  RSFFRMQPGSTRYLTQWMSDVWRNQFLFWSIVAGFVTTFPILYIPVLNHVVFKHTGISW-  772
            RS F++              ++ N+ L  +I+   +    I+Y+P L   VF  T +S  
Sbjct  108  RSLFKI-------------GLFSNKLLLLAILLSLLLQLLIIYVPPLQA-VFGTTPLSLE  153

Query  773  EWGIVFVEAVLFFLGVELWKF  793
            +W IV + A++  L VEL K 
Sbjct  154  QWLIVLLLALVVLLVVELRKL  174


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 93.1 bits (232),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query  229  AMANLSHV-YRSDDGEWHARGEPTEIAIQVFAARFNWNRDRWTKGERPVWHQKAEFPFDS  287
            A+ N +      + G+W   G+PTE A+ VFA +         +  R  + + AE PF+S
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEKMG----IDVEELRKDYPRVAEIPFNS  56

Query  288  TVKKMSVIFSRFDGDGGTERSMVFTKGAVERILDACTTV  326
              K+MS +    D      +  +F KGA E ILD CTT+
Sbjct  57   DRKRMSTVHKLPDDG----KYRLFVKGAPEIILDRCTTI  91


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 62.2 bits (151),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 62/173 (36%), Gaps = 28/173 (16%)

Query  346  LQNMEELARLGLRVLALAHKPYAPSTRLLEDADLPRDEIERDLCFLGLIGLYDPPRPETA  405
            +++      LG R               LE        +  +L  +  +       P  A
Sbjct  47   VEDFTARLLLGKRDWLEELDILRGLVETLEAEG--LTVVLVELLGVIALADELKLYPGAA  104

Query  406  GAIRACAQAGIAVHMVTGDHPGTATAIAQQVGILPSDLGSVAADVADAMVMTAGQFDKLT  465
             A++A  + GI V ++TGD+P  A A+ + +G+       ++ D                
Sbjct  105  EALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFDVVISGDD---------------  149

Query  466  DREVDALPTLPLVIARCAPQTKVRMIDALHRRGQFAAMTGDGVNDSPSLKHAD  518
                       + + +  P+  +  ++ L  + +   M GDGVND P+ K A 
Sbjct  150  -----------VGVGKPKPEIYLAALERLGVKPEEVLMVGDGVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.323    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0697    0.140     1.90     42.6     43.6 

Effective search space used: 1043343984


Query= TCONS_00030646

Length=811
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase...  101     4e-25
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  93.1    2e-23
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  62.2    1e-11


>CDD:376368 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. 
 Members of this families are involved in Na+/K+, H+/K+, 
Ca++ and Mg++ transport. This family represents 5 transmembrane 
helices.
Length=175

 Score = 101 bits (253),  Expect = 4e-25, Method: Composition-based stats.
 Identities = 60/201 (30%), Positives = 96/201 (48%), Gaps = 31/201 (15%)

Query  595  PLAPVEILWIIMITSGMPDMGLGMEVAAPDIMARPPQ-TKQGIFTGEVVVDIVVYGVWTA  653
            PL P++ILWI ++T G+P + LG E   PD+M RPP+  K+ +F+ +++  I++ G+  A
Sbjct  3    PLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKMLRRILLQGLLIA  62

Query  654  ALCLASFSVVVWGFGDGHLARGCNREYSAECDLVFRARATTFVCLTWFALFLAWEMVDMR  713
             L L  F + + GFG                     A+   F  L    LF A     +R
Sbjct  63   ILTLLVFFLGLLGFGISESQ---------------NAQTMAFNTLVLSQLFNALNARSLR  107

Query  714  RSFFRMQPGSTRYLTQWMSDVWRNQFLFWSIVAGFVTTFPILYIPVLNHVVFKHTGISW-  772
            RS F++              ++ N+ L  +I+   +    I+Y+P L   VF  T +S  
Sbjct  108  RSLFKI-------------GLFSNKLLLLAILLSLLLQLLIIYVPPLQA-VFGTTPLSLE  153

Query  773  EWGIVFVEAVLFFLGVELWKF  793
            +W IV + A++  L VEL K 
Sbjct  154  QWLIVLLLALVVLLVVELRKL  174


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 93.1 bits (232),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query  229  AMANLSHV-YRSDDGEWHARGEPTEIAIQVFAARFNWNRDRWTKGERPVWHQKAEFPFDS  287
            A+ N +      + G+W   G+PTE A+ VFA +         +  R  + + AE PF+S
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEKMG----IDVEELRKDYPRVAEIPFNS  56

Query  288  TVKKMSVIFSRFDGDGGTERSMVFTKGAVERILDACTTV  326
              K+MS +    D      +  +F KGA E ILD CTT+
Sbjct  57   DRKRMSTVHKLPDDG----KYRLFVKGAPEIILDRCTTI  91


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 62.2 bits (151),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 62/173 (36%), Gaps = 28/173 (16%)

Query  346  LQNMEELARLGLRVLALAHKPYAPSTRLLEDADLPRDEIERDLCFLGLIGLYDPPRPETA  405
            +++      LG R               LE        +  +L  +  +       P  A
Sbjct  47   VEDFTARLLLGKRDWLEELDILRGLVETLEAEG--LTVVLVELLGVIALADELKLYPGAA  104

Query  406  GAIRACAQAGIAVHMVTGDHPGTATAIAQQVGILPSDLGSVAADVADAMVMTAGQFDKLT  465
             A++A  + GI V ++TGD+P  A A+ + +G+       ++ D                
Sbjct  105  EALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFDVVISGDD---------------  149

Query  466  DREVDALPTLPLVIARCAPQTKVRMIDALHRRGQFAAMTGDGVNDSPSLKHAD  518
                       + + +  P+  +  ++ L  + +   M GDGVND P+ K A 
Sbjct  150  -----------VGVGKPKPEIYLAALERLGVKPEEVLMVGDGVNDIPAAKAAG  191



Lambda      K        H        a         alpha
   0.323    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1043343984


Query= TCONS_00030647

Length=1417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465352 pfam17109, Goodbye, fungal STAND N-terminal Goodbye do...  145     6e-41


>CDD:465352 pfam17109, Goodbye, fungal STAND N-terminal Goodbye domain.  
The Goodbye domain is an N-terminal domain on certain fungal 
STAND proteins. The exact function is not known.
Length=120

 Score = 145 bits (367),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 41/104 (39%), Positives = 59/104 (57%), Gaps = 0/104 (0%)

Query  4    DGDFPKIHGPEDLSRHLDAERDHFEDFRMKKRPLLHAMQIILAPFEHWGDLLAGVASAAF  63
            D D P    PEDL + ++A +D FE+FR K+     A++  L P +  G L A  AS  F
Sbjct  17   DTDLPPPKSPEDLLKQIEARKDKFEEFREKREKAKEALKNTLRPIQLLGGLAAQGASMVF  76

Query  64   PPASSIMGAMMLLVRGARRVSESFDMLMDLFHKLGHFALRLDSY  107
             PAS    A+  L+  A++VSE +D + +LF +LG F  RL+ Y
Sbjct  77   GPASLCFNAVSYLIDAAKKVSEIYDAIDELFDELGPFLERLEIY  120



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1815735400


Query= TCONS_00030648

Length=1447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465352 pfam17109, Goodbye, fungal STAND N-terminal Goodbye do...  167     8e-49


>CDD:465352 pfam17109, Goodbye, fungal STAND N-terminal Goodbye domain.  
The Goodbye domain is an N-terminal domain on certain fungal 
STAND proteins. The exact function is not known.
Length=120

 Score = 167 bits (425),  Expect = 8e-49, Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 69/121 (57%), Gaps = 1/121 (1%)

Query  17   WQSACDDYAKETGIALTDGDFPKIHGPEDLSRHLDAERDHFEDFRMKKRPLLHAMQIILA  76
            W+ AC  +AK TG  L D D P    PEDL + ++A +D FE+FR K+     A++  L 
Sbjct  1    WEEACARFAKRTGKDL-DTDLPPPKSPEDLLKQIEARKDKFEEFREKREKAKEALKNTLR  59

Query  77   PFEHWGDLLAGVASAAFPPASSIMGAMMLLVRGARRVSESFDMLMDLFHKLGHFALRLDS  136
            P +  G L A  AS  F PAS    A+  L+  A++VSE +D + +LF +LG F  RL+ 
Sbjct  60   PIQLLGGLAAQGASMVFGPASLCFNAVSYLIDAAKKVSEIYDAIDELFDELGPFLERLEI  119

Query  137  Y  137
            Y
Sbjct  120  Y  120



Lambda      K        H        a         alpha
   0.320    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1829184776


Query= TCONS_00030649

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase. This...  70.1    3e-14


>CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase.  This family 
includes a variety of carbohydrate and pyrimidine kinases.
Length=294

 Score = 70.1 bits (172),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 38/143 (27%), Positives = 58/143 (41%), Gaps = 17/143 (12%)

Query  166  CKPENLQPCLSAAQHVDVLSPNHLELAALFGESPAKAHDKATIEALARRVLDSGVGIDGK  225
                  +  L      D+L PN  EL AL G           IE     +    +   G 
Sbjct  166  PLGAAREALLELLPLADLLKPNEEELEALTG------AKLDDIEEALAALH--KLLAKGI  217

Query  226  GTVVVRAGENGSVVVSRDLPPTWLPPFYPAGADGRQHSKVVDPTGAGNAFLGAYVVGYLQ  285
             TV+V  G +G++VV  D       P  P         KVVD TGAG++F+G ++ G L 
Sbjct  218  KTVIVTLGADGALVVEGD--GEVHVPAVPKV-------KVVDTTGAGDSFVGGFLAGLLA  268

Query  286  TQNAVEAACYGTVGGSFALEQVG  308
             ++  EA  +     +  +++ G
Sbjct  269  GKSLEEALRFANAAAALVVQKSG  291



Lambda      K        H        a         alpha
   0.319    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00030650

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase. This...  69.7    2e-14


>CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase.  This family 
includes a variety of carbohydrate and pyrimidine kinases.
Length=294

 Score = 69.7 bits (171),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 38/143 (27%), Positives = 58/143 (41%), Gaps = 17/143 (12%)

Query  95   CKPENLQPCLSAAQHVDVLSPNHLELAALFGESPAKAHDKATIEALARRVLDSGVGIDGK  154
                  +  L      D+L PN  EL AL G           IE     +    +   G 
Sbjct  166  PLGAAREALLELLPLADLLKPNEEELEALTG------AKLDDIEEALAALH--KLLAKGI  217

Query  155  GTVVVRAGENGSVVVSRDLPPTWLPPFYPAGADGRQHSKVVDPTGAGNAFLGAYVVGYLQ  214
             TV+V  G +G++VV  D       P  P         KVVD TGAG++F+G ++ G L 
Sbjct  218  KTVIVTLGADGALVVEGD--GEVHVPAVPKV-------KVVDTTGAGDSFVGGFLAGLLA  268

Query  215  TQNAVEAACYGTVGGSFALEQVG  237
             ++  EA  +     +  +++ G
Sbjct  269  GKSLEEALRFANAAAALVVQKSG  291



Lambda      K        H        a         alpha
   0.317    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00035101

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase. This...  69.7    2e-14


>CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase.  This family 
includes a variety of carbohydrate and pyrimidine kinases.
Length=294

 Score = 69.7 bits (171),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 38/143 (27%), Positives = 58/143 (41%), Gaps = 17/143 (12%)

Query  95   CKPENLQPCLSAAQHVDVLSPNHLELAALFGESPAKAHDKATIEALARRVLDSGVGIDGK  154
                  +  L      D+L PN  EL AL G           IE     +    +   G 
Sbjct  166  PLGAAREALLELLPLADLLKPNEEELEALTG------AKLDDIEEALAALH--KLLAKGI  217

Query  155  GTVVVRAGENGSVVVSRDLPPTWLPPFYPAGADGRQHSKVVDPTGAGNAFLGAYVVGYLQ  214
             TV+V  G +G++VV  D       P  P         KVVD TGAG++F+G ++ G L 
Sbjct  218  KTVIVTLGADGALVVEGD--GEVHVPAVPKV-------KVVDTTGAGDSFVGGFLAGLLA  268

Query  215  TQNAVEAACYGTVGGSFALEQVG  237
             ++  EA  +     +  +++ G
Sbjct  269  GKSLEEALRFANAAAALVVQKSG  291



Lambda      K        H        a         alpha
   0.317    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00030651

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase. This...  70.8    2e-14


>CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase.  This family 
includes a variety of carbohydrate and pyrimidine kinases.
Length=294

 Score = 70.8 bits (174),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 38/143 (27%), Positives = 58/143 (41%), Gaps = 17/143 (12%)

Query  171  CKPENLQPCLSAAQHVDVLSPNHLELAALFGESPAKAHDKATIEALARRVLDSGVGIDGK  230
                  +  L      D+L PN  EL AL G           IE     +    +   G 
Sbjct  166  PLGAAREALLELLPLADLLKPNEEELEALTG------AKLDDIEEALAALH--KLLAKGI  217

Query  231  GTVVVRAGENGSVVVSRDLPPTWLPPFYPAGADGRQHSKVVDPTGAGNAFLGAYVVGYLQ  290
             TV+V  G +G++VV  D       P  P         KVVD TGAG++F+G ++ G L 
Sbjct  218  KTVIVTLGADGALVVEGD--GEVHVPAVPKV-------KVVDTTGAGDSFVGGFLAGLLA  268

Query  291  TQNAVEAACYGTVGGSFALEQVG  313
             ++  EA  +     +  +++ G
Sbjct  269  GKSLEEALRFANAAAALVVQKSG  291



Lambda      K        H        a         alpha
   0.318    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00030652

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase. This...  70.4    2e-14


>CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase.  This family 
includes a variety of carbohydrate and pyrimidine kinases.
Length=294

 Score = 70.4 bits (173),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 38/143 (27%), Positives = 58/143 (41%), Gaps = 17/143 (12%)

Query  154  CKPENLQPCLSAAQHVDVLSPNHLELAALFGESPAKAHDKATIEALARRVLDSGVGIDGK  213
                  +  L      D+L PN  EL AL G           IE     +    +   G 
Sbjct  166  PLGAAREALLELLPLADLLKPNEEELEALTG------AKLDDIEEALAALH--KLLAKGI  217

Query  214  GTVVVRAGENGSVVVSRDLPPTWLPPFYPAGADGRQHSKVVDPTGAGNAFLGAYVVGYLQ  273
             TV+V  G +G++VV  D       P  P         KVVD TGAG++F+G ++ G L 
Sbjct  218  KTVIVTLGADGALVVEGD--GEVHVPAVPKV-------KVVDTTGAGDSFVGGFLAGLLA  268

Query  274  TQNAVEAACYGTVGGSFALEQVG  296
             ++  EA  +     +  +++ G
Sbjct  269  GKSLEEALRFANAAAALVVQKSG  291



Lambda      K        H        a         alpha
   0.318    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00030653

Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463978 pfam13774, Longin, Regulated-SNARE-like domain. Longin...  54.9    8e-12


>CDD:463978 pfam13774, Longin, Regulated-SNARE-like domain.  Longin is one 
of the approximately 26 components required for transporting 
proteins from the ER to the plasma membrane, via the Golgi 
apparatus. It is necessary for the steps of the transfer from 
the ER to the Golgi complex. Longins are the only R-SNAREs 
that are common to all eukaryotes, and they are characterized 
by a conserved N-terminal domain with a profilin-like fold 
called a longin domain.
Length=81

 Score = 54.9 bits (133),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 19/53 (36%), Positives = 27/53 (51%), Gaps = 3/53 (6%)

Query  12  DFTFHVYARTQGIAGVIISDNEYPSLAAHQILSKILDEFLSQNP--TAATSRN  62
           ++TFH      G+  ++I+D  YP   A   L +I DEFLS     TA+  R 
Sbjct  21  NYTFHYLIE-DGLTYLVIADKSYPRRLAFAFLEEIKDEFLSTYGPWTASALRP  72



Lambda      K        H        a         alpha
   0.317    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00030654

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00030655

Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463978 pfam13774, Longin, Regulated-SNARE-like domain. Longin...  54.9    8e-12


>CDD:463978 pfam13774, Longin, Regulated-SNARE-like domain.  Longin is one 
of the approximately 26 components required for transporting 
proteins from the ER to the plasma membrane, via the Golgi 
apparatus. It is necessary for the steps of the transfer from 
the ER to the Golgi complex. Longins are the only R-SNAREs 
that are common to all eukaryotes, and they are characterized 
by a conserved N-terminal domain with a profilin-like fold 
called a longin domain.
Length=81

 Score = 54.9 bits (133),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 19/53 (36%), Positives = 27/53 (51%), Gaps = 3/53 (6%)

Query  12  DFTFHVYARTQGIAGVIISDNEYPSLAAHQILSKILDEFLSQNP--TAATSRN  62
           ++TFH      G+  ++I+D  YP   A   L +I DEFLS     TA+  R 
Sbjct  21  NYTFHYLIE-DGLTYLVIADKSYPRRLAFAFLEEIKDEFLSTYGPWTASALRP  72



Lambda      K        H        a         alpha
   0.317    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00035102

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00030656

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  91.3    4e-22


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 91.3 bits (227),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 60/251 (24%), Positives = 97/251 (39%), Gaps = 19/251 (8%)

Query  19   VVMAGIFLSFLFE----YIGHRIILARATRCASPCPEQTGDMSPSSTSKELPASQPPPPP  74
            +V+ G  L  L E    Y  HR     A    S         +   T  E          
Sbjct  83   IVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVKSVSNVEVTESEEGEDHGHLHG  142

Query  75   PQQQQQPPTLAALGHHHG------PPLDPTNPNTKLSVLVMEAGVVFHSILIGLTL-VVA  127
                                            + ++  +++E G++ HS   GL L V +
Sbjct  143  HDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAILLELGIILHSFFEGLALGVSS  202

Query  128  GDSFYKTLLVVIVFHQFFEGLALGARIAMLPGPLLGSKALMAGTFAVITPIGMAIGLGVL  187
                  +L + I+FH+  EGL LGA +    G       L+A  FA+ TP+G+ IG+GV 
Sbjct  203  SSDTGISLFIAILFHKIPEGLGLGAILLQA-GFSRKKAVLLALLFALTTPLGILIGIGVS  261

Query  188  HSFNGNDQSTLVALGTLDALSAGILVWVGLVDMWARDWVMDGGEMMNARLSIVAVGGFSL  247
                GN     +  G L A SAG  ++V LV++   + +       + +LS++ +   +L
Sbjct  262  S--IGNSPGADITSGILLAFSAGTFLYVALVELLPHELL---RNKSSEKLSLLQL--LAL  314

Query  248  IAGMVLMGVLG  258
            + G  LM +L 
Sbjct  315  LLGFALMALLA  325



Lambda      K        H        a         alpha
   0.322    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00030657

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00030659

Length=141
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404766 pfam13933, HRXXH, Putative peptidase family. This fami...  165     1e-52


>CDD:404766 pfam13933, HRXXH, Putative peptidase family.  This family of 
putative peptidases are closely related to the M35 family pfam02102. 
In this family the metal binding HEXXH motif is replaced 
with HRXXH. The exact function of these proteins is unknown. 
Members of this family are found to be fungal allergens.
Length=244

 Score = 165 bits (419),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 71/86 (83%), Gaps = 0/86 (0%)

Query  1    MCSQGYTVAGSETNTFWASDLMHRLYHVPAVGQGWVDHFADGYDEVIALAKSNGTESTHD  60
            +CS GYTV+ S TNT+WA DL+HRL+HVPA+G+G+V H+AD Y+EV+ LAK+N T +  +
Sbjct  159  ICSLGYTVSESPTNTYWAIDLLHRLFHVPAIGEGYVGHYADTYEEVLELAKNNATYAVRN  218

Query  61   SEALQYFALEAYAFDIAAPGVGCAGE  86
            S+ LQY+AL+ YA+DIA PGVGC G+
Sbjct  219  SDTLQYYALDVYAYDIAVPGVGCLGD  244



Lambda      K        H        a         alpha
   0.309    0.124    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00030658

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00035103

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.129    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00030660

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  91.3    4e-22


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 91.3 bits (227),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 60/251 (24%), Positives = 97/251 (39%), Gaps = 19/251 (8%)

Query  19   VVMAGIFLSFLFE----YIGHRIILARATRCASPCPEQTGDMSPSSTSKELPASQPPPPP  74
            +V+ G  L  L E    Y  HR     A    S         +   T  E          
Sbjct  83   IVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVKSVSNVEVTESEEGEDHGHLHG  142

Query  75   PQQQQQPPTLAALGHHHG------PPLDPTNPNTKLSVLVMEAGVVFHSILIGLTL-VVA  127
                                            + ++  +++E G++ HS   GL L V +
Sbjct  143  HDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAILLELGIILHSFFEGLALGVSS  202

Query  128  GDSFYKTLLVVIVFHQFFEGLALGARIAMLPGPLLGSKALMAGTFAVITPIGMAIGLGVL  187
                  +L + I+FH+  EGL LGA +    G       L+A  FA+ TP+G+ IG+GV 
Sbjct  203  SSDTGISLFIAILFHKIPEGLGLGAILLQA-GFSRKKAVLLALLFALTTPLGILIGIGVS  261

Query  188  HSFNGNDQSTLVALGTLDALSAGILVWVGLVDMWARDWVMDGGEMMNARLSIVAVGGFSL  247
                GN     +  G L A SAG  ++V LV++   + +       + +LS++ +   +L
Sbjct  262  S--IGNSPGADITSGILLAFSAGTFLYVALVELLPHELL---RNKSSEKLSLLQL--LAL  314

Query  248  IAGMVLMGVLG  258
            + G  LM +L 
Sbjct  315  LLGFALMALLA  325



Lambda      K        H        a         alpha
   0.322    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00035105

Length=141
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404766 pfam13933, HRXXH, Putative peptidase family. This fami...  165     1e-52


>CDD:404766 pfam13933, HRXXH, Putative peptidase family.  This family of 
putative peptidases are closely related to the M35 family pfam02102. 
In this family the metal binding HEXXH motif is replaced 
with HRXXH. The exact function of these proteins is unknown. 
Members of this family are found to be fungal allergens.
Length=244

 Score = 165 bits (419),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 71/86 (83%), Gaps = 0/86 (0%)

Query  1    MCSQGYTVAGSETNTFWASDLMHRLYHVPAVGQGWVDHFADGYDEVIALAKSNGTESTHD  60
            +CS GYTV+ S TNT+WA DL+HRL+HVPA+G+G+V H+AD Y+EV+ LAK+N T +  +
Sbjct  159  ICSLGYTVSESPTNTYWAIDLLHRLFHVPAIGEGYVGHYADTYEEVLELAKNNATYAVRN  218

Query  61   SEALQYFALEAYAFDIAAPGVGCAGE  86
            S+ LQY+AL+ YA+DIA PGVGC G+
Sbjct  219  SDTLQYYALDVYAYDIAVPGVGCLGD  244



Lambda      K        H        a         alpha
   0.309    0.124    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00030661

Length=314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404766 pfam13933, HRXXH, Putative peptidase family. This fami...  408     9e-146


>CDD:404766 pfam13933, HRXXH, Putative peptidase family.  This family of 
putative peptidases are closely related to the M35 family pfam02102. 
In this family the metal binding HEXXH motif is replaced 
with HRXXH. The exact function of these proteins is unknown. 
Members of this family are found to be fungal allergens.
Length=244

 Score = 408 bits (1050),  Expect = 9e-146, Method: Composition-based stats.
 Identities = 141/231 (61%), Positives = 176/231 (76%), Gaps = 1/231 (0%)

Query  24   TLPTSPVPIAARATPHEPVFFSWDAGAVTSFPIHSSCNATQRRQIEAGLNEAVELARHAK  83
             LP S      R++   P  + W AGAV  FPIHSSCNATQRRQ+  GL+E VELA HA+
Sbjct  14   PLPASTERATTRSSSTTPTAYPWSAGAVPQFPIHSSCNATQRRQLSRGLDETVELAAHAR  73

Query  84   AHILRWGNESEIYRKYFGNRPTMEAVGAYDVIVNGDKANVLFRCDNPDGNCA-LEGWGGH  142
             H+LR+GN SE YRKYFGN P+ E +G ++ IV+ DK++VLFRCD+PDGNCA   GW GH
Sbjct  74   DHLLRFGNSSEFYRKYFGNAPSAEVIGWFERIVSADKSDVLFRCDDPDGNCAANPGWAGH  133

Query  143  WRGANATSETVICDRSYTTRRWLVSMCSQGYTVAGSETNTFWASDLMHRLYHVPAVGQGW  202
            WRG NAT ETVICD SYTTRR L  +CS GYTV+ S TNT+WA DL+HRL+HVPA+G+G+
Sbjct  134  WRGENATDETVICDLSYTTRRPLSQICSLGYTVSESPTNTYWAIDLLHRLFHVPAIGEGY  193

Query  203  VDHFADGYDEVIALAKSNGTESTHDSEALQYFALEAYAFDIAAPGVGCAGE  253
            V H+AD Y+EV+ LAK+N T +  +S+ LQY+AL+ YA+DIA PGVGC G+
Sbjct  194  VGHYADTYEEVLELAKNNATYAVRNSDTLQYYALDVYAYDIAVPGVGCLGD  244



Lambda      K        H        a         alpha
   0.316    0.129    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00035106

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404766 pfam13933, HRXXH, Putative peptidase family. This fami...  408     2e-146


>CDD:404766 pfam13933, HRXXH, Putative peptidase family.  This family of 
putative peptidases are closely related to the M35 family pfam02102. 
In this family the metal binding HEXXH motif is replaced 
with HRXXH. The exact function of these proteins is unknown. 
Members of this family are found to be fungal allergens.
Length=244

 Score = 408 bits (1051),  Expect = 2e-146, Method: Composition-based stats.
 Identities = 141/231 (61%), Positives = 176/231 (76%), Gaps = 1/231 (0%)

Query  24   TLPTSPVPIAARATPHEPVFFSWDAGAVTSFPIHSSCNATQRRQIEAGLNEAVELARHAK  83
             LP S      R++   P  + W AGAV  FPIHSSCNATQRRQ+  GL+E VELA HA+
Sbjct  14   PLPASTERATTRSSSTTPTAYPWSAGAVPQFPIHSSCNATQRRQLSRGLDETVELAAHAR  73

Query  84   AHILRWGNESEIYRKYFGNRPTMEAVGAYDVIVNGDKANVLFRCDNPDGNCA-LEGWGGH  142
             H+LR+GN SE YRKYFGN P+ E +G ++ IV+ DK++VLFRCD+PDGNCA   GW GH
Sbjct  74   DHLLRFGNSSEFYRKYFGNAPSAEVIGWFERIVSADKSDVLFRCDDPDGNCAANPGWAGH  133

Query  143  WRGANATSETVICDRSYTTRRWLVSMCSQGYTVAGSETNTFWASDLMHRLYHVPAVGQGW  202
            WRG NAT ETVICD SYTTRR L  +CS GYTV+ S TNT+WA DL+HRL+HVPA+G+G+
Sbjct  134  WRGENATDETVICDLSYTTRRPLSQICSLGYTVSESPTNTYWAIDLLHRLFHVPAIGEGY  193

Query  203  VDHFADGYDEVIALAKSNGTESTHDSEALQYFALEAYAFDIAAPGVGCAGE  253
            V H+AD Y+EV+ LAK+N T +  +S+ LQY+AL+ YA+DIA PGVGC G+
Sbjct  194  VGHYADTYEEVLELAKNNATYAVRNSDTLQYYALDVYAYDIAVPGVGCLGD  244



Lambda      K        H        a         alpha
   0.317    0.130    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00030662

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  91.3    4e-22


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 91.3 bits (227),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 60/251 (24%), Positives = 97/251 (39%), Gaps = 19/251 (8%)

Query  19   VVMAGIFLSFLFE----YIGHRIILARATRCASPCPEQTGDMSPSSTSKELPASQPPPPP  74
            +V+ G  L  L E    Y  HR     A    S         +   T  E          
Sbjct  83   IVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVKSVSNVEVTESEEGEDHGHLHG  142

Query  75   PQQQQQPPTLAALGHHHG------PPLDPTNPNTKLSVLVMEAGVVFHSILIGLTL-VVA  127
                                            + ++  +++E G++ HS   GL L V +
Sbjct  143  HDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAILLELGIILHSFFEGLALGVSS  202

Query  128  GDSFYKTLLVVIVFHQFFEGLALGARIAMLPGPLLGSKALMAGTFAVITPIGMAIGLGVL  187
                  +L + I+FH+  EGL LGA +    G       L+A  FA+ TP+G+ IG+GV 
Sbjct  203  SSDTGISLFIAILFHKIPEGLGLGAILLQA-GFSRKKAVLLALLFALTTPLGILIGIGVS  261

Query  188  HSFNGNDQSTLVALGTLDALSAGILVWVGLVDMWARDWVMDGGEMMNARLSIVAVGGFSL  247
                GN     +  G L A SAG  ++V LV++   + +       + +LS++ +   +L
Sbjct  262  S--IGNSPGADITSGILLAFSAGTFLYVALVELLPHELL---RNKSSEKLSLLQL--LAL  314

Query  248  IAGMVLMGVLG  258
            + G  LM +L 
Sbjct  315  LLGFALMALLA  325



Lambda      K        H        a         alpha
   0.322    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00035107

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00030663

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404766 pfam13933, HRXXH, Putative peptidase family. This fami...  410     1e-146


>CDD:404766 pfam13933, HRXXH, Putative peptidase family.  This family of 
putative peptidases are closely related to the M35 family pfam02102. 
In this family the metal binding HEXXH motif is replaced 
with HRXXH. The exact function of these proteins is unknown. 
Members of this family are found to be fungal allergens.
Length=244

 Score = 410 bits (1055),  Expect = 1e-146, Method: Composition-based stats.
 Identities = 141/231 (61%), Positives = 176/231 (76%), Gaps = 1/231 (0%)

Query  24   TLPTSPVPIAARATPHEPVFFSWDAGAVTSFPIHSSCNATQRRQIEAGLNEAVELARHAK  83
             LP S      R++   P  + W AGAV  FPIHSSCNATQRRQ+  GL+E VELA HA+
Sbjct  14   PLPASTERATTRSSSTTPTAYPWSAGAVPQFPIHSSCNATQRRQLSRGLDETVELAAHAR  73

Query  84   AHILRWGNESEIYRKYFGNRPTMEAVGAYDVIVNGDKANVLFRCDNPDGNCA-LEGWGGH  142
             H+LR+GN SE YRKYFGN P+ E +G ++ IV+ DK++VLFRCD+PDGNCA   GW GH
Sbjct  74   DHLLRFGNSSEFYRKYFGNAPSAEVIGWFERIVSADKSDVLFRCDDPDGNCAANPGWAGH  133

Query  143  WRGANATSETVICDRSYTTRRWLVSMCSQGYTVAGSETNTFWASDLMHRLYHVPAVGQGW  202
            WRG NAT ETVICD SYTTRR L  +CS GYTV+ S TNT+WA DL+HRL+HVPA+G+G+
Sbjct  134  WRGENATDETVICDLSYTTRRPLSQICSLGYTVSESPTNTYWAIDLLHRLFHVPAIGEGY  193

Query  203  VDHFADGYDEVIALAKSNGTESTHDSEALQYFALEAYAFDIAAPGVGCAGE  253
            V H+AD Y+EV+ LAK+N T +  +S+ LQY+AL+ YA+DIA PGVGC G+
Sbjct  194  VGHYADTYEEVLELAKNNATYAVRNSDTLQYYALDVYAYDIAVPGVGCLGD  244



Lambda      K        H        a         alpha
   0.316    0.129    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00030664

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396884 pfam02535, Zip, ZIP Zinc transporter. The ZIP family c...  91.3    4e-22


>CDD:396884 pfam02535, Zip, ZIP Zinc transporter.  The ZIP family consists 
of zinc transport proteins and many putative metal transporters. 
The main contribution to this family is from the Arabidopsis 
thaliana ZIP protein family these proteins are responsible 
for zinc uptake in the plant. Also found within this 
family are C. elegans proteins of unknown function which are 
annotated as being similar to human growth arrest inducible 
gene product, although this protein in not found within this 
family.
Length=325

 Score = 91.3 bits (227),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 60/251 (24%), Positives = 97/251 (39%), Gaps = 19/251 (8%)

Query  19   VVMAGIFLSFLFE----YIGHRIILARATRCASPCPEQTGDMSPSSTSKELPASQPPPPP  74
            +V+ G  L  L E    Y  HR     A    S         +   T  E          
Sbjct  83   IVLLGFLLVLLVEKLLTYYKHRPTPGPADNSHSHLATVKSVSNVEVTESEEGEDHGHLHG  142

Query  75   PQQQQQPPTLAALGHHHG------PPLDPTNPNTKLSVLVMEAGVVFHSILIGLTL-VVA  127
                                            + ++  +++E G++ HS   GL L V +
Sbjct  143  HDDDSDELLHKGHQGPSDSIHEQSDEDGEPLASQRVRAILLELGIILHSFFEGLALGVSS  202

Query  128  GDSFYKTLLVVIVFHQFFEGLALGARIAMLPGPLLGSKALMAGTFAVITPIGMAIGLGVL  187
                  +L + I+FH+  EGL LGA +    G       L+A  FA+ TP+G+ IG+GV 
Sbjct  203  SSDTGISLFIAILFHKIPEGLGLGAILLQA-GFSRKKAVLLALLFALTTPLGILIGIGVS  261

Query  188  HSFNGNDQSTLVALGTLDALSAGILVWVGLVDMWARDWVMDGGEMMNARLSIVAVGGFSL  247
                GN     +  G L A SAG  ++V LV++   + +       + +LS++ +   +L
Sbjct  262  S--IGNSPGADITSGILLAFSAGTFLYVALVELLPHELL---RNKSSEKLSLLQL--LAL  314

Query  248  IAGMVLMGVLG  258
            + G  LM +L 
Sbjct  315  LLGFALMALLA  325



Lambda      K        H        a         alpha
   0.322    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 287213344


Query= TCONS_00030666

Length=314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404766 pfam13933, HRXXH, Putative peptidase family. This fami...  408     9e-146


>CDD:404766 pfam13933, HRXXH, Putative peptidase family.  This family of 
putative peptidases are closely related to the M35 family pfam02102. 
In this family the metal binding HEXXH motif is replaced 
with HRXXH. The exact function of these proteins is unknown. 
Members of this family are found to be fungal allergens.
Length=244

 Score = 408 bits (1050),  Expect = 9e-146, Method: Composition-based stats.
 Identities = 141/231 (61%), Positives = 176/231 (76%), Gaps = 1/231 (0%)

Query  24   TLPTSPVPIAARATPHEPVFFSWDAGAVTSFPIHSSCNATQRRQIEAGLNEAVELARHAK  83
             LP S      R++   P  + W AGAV  FPIHSSCNATQRRQ+  GL+E VELA HA+
Sbjct  14   PLPASTERATTRSSSTTPTAYPWSAGAVPQFPIHSSCNATQRRQLSRGLDETVELAAHAR  73

Query  84   AHILRWGNESEIYRKYFGNRPTMEAVGAYDVIVNGDKANVLFRCDNPDGNCA-LEGWGGH  142
             H+LR+GN SE YRKYFGN P+ E +G ++ IV+ DK++VLFRCD+PDGNCA   GW GH
Sbjct  74   DHLLRFGNSSEFYRKYFGNAPSAEVIGWFERIVSADKSDVLFRCDDPDGNCAANPGWAGH  133

Query  143  WRGANATSETVICDRSYTTRRWLVSMCSQGYTVAGSETNTFWASDLMHRLYHVPAVGQGW  202
            WRG NAT ETVICD SYTTRR L  +CS GYTV+ S TNT+WA DL+HRL+HVPA+G+G+
Sbjct  134  WRGENATDETVICDLSYTTRRPLSQICSLGYTVSESPTNTYWAIDLLHRLFHVPAIGEGY  193

Query  203  VDHFADGYDEVIALAKSNGTESTHDSEALQYFALEAYAFDIAAPGVGCAGE  253
            V H+AD Y+EV+ LAK+N T +  +S+ LQY+AL+ YA+DIA PGVGC G+
Sbjct  194  VGHYADTYEEVLELAKNNATYAVRNSDTLQYYALDVYAYDIAVPGVGCLGD  244



Lambda      K        H        a         alpha
   0.316    0.129    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00035109

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404766 pfam13933, HRXXH, Putative peptidase family. This fami...  163     5e-52


>CDD:404766 pfam13933, HRXXH, Putative peptidase family.  This family of 
putative peptidases are closely related to the M35 family pfam02102. 
In this family the metal binding HEXXH motif is replaced 
with HRXXH. The exact function of these proteins is unknown. 
Members of this family are found to be fungal allergens.
Length=244

 Score = 163 bits (415),  Expect = 5e-52, Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 71/86 (83%), Gaps = 0/86 (0%)

Query  1    MCSQGYTVAGSETNTFWASDLMHRLYHVPAVGQGWVDHFADGYDEVIALAKSNGTESTHD  60
            +CS GYTV+ S TNT+WA DL+HRL+HVPA+G+G+V H+AD Y+EV+ LAK+N T +  +
Sbjct  159  ICSLGYTVSESPTNTYWAIDLLHRLFHVPAIGEGYVGHYADTYEEVLELAKNNATYAVRN  218

Query  61   SEALQYFALEAYAFDIAAPGVGCAGE  86
            S+ LQY+AL+ YA+DIA PGVGC G+
Sbjct  219  SDTLQYYALDVYAYDIAVPGVGCLGD  244



Lambda      K        H        a         alpha
   0.310    0.125    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00030667

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404766 pfam13933, HRXXH, Putative peptidase family. This fami...  163     4e-52


>CDD:404766 pfam13933, HRXXH, Putative peptidase family.  This family of 
putative peptidases are closely related to the M35 family pfam02102. 
In this family the metal binding HEXXH motif is replaced 
with HRXXH. The exact function of these proteins is unknown. 
Members of this family are found to be fungal allergens.
Length=244

 Score = 163 bits (415),  Expect = 4e-52, Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 71/86 (83%), Gaps = 0/86 (0%)

Query  1    MCSQGYTVAGSETNTFWASDLMHRLYHVPAVGQGWVDHFADGYDEVIALAKSNGTESTHD  60
            +CS GYTV+ S TNT+WA DL+HRL+HVPA+G+G+V H+AD Y+EV+ LAK+N T +  +
Sbjct  159  ICSLGYTVSESPTNTYWAIDLLHRLFHVPAIGEGYVGHYADTYEEVLELAKNNATYAVRN  218

Query  61   SEALQYFALEAYAFDIAAPGVGCAGE  86
            S+ LQY+AL+ YA+DIA PGVGC G+
Sbjct  219  SDTLQYYALDVYAYDIAVPGVGCLGD  244



Lambda      K        H        a         alpha
   0.309    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00030668

Length=314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404766 pfam13933, HRXXH, Putative peptidase family. This fami...  408     9e-146


>CDD:404766 pfam13933, HRXXH, Putative peptidase family.  This family of 
putative peptidases are closely related to the M35 family pfam02102. 
In this family the metal binding HEXXH motif is replaced 
with HRXXH. The exact function of these proteins is unknown. 
Members of this family are found to be fungal allergens.
Length=244

 Score = 408 bits (1050),  Expect = 9e-146, Method: Composition-based stats.
 Identities = 141/231 (61%), Positives = 176/231 (76%), Gaps = 1/231 (0%)

Query  24   TLPTSPVPIAARATPHEPVFFSWDAGAVTSFPIHSSCNATQRRQIEAGLNEAVELARHAK  83
             LP S      R++   P  + W AGAV  FPIHSSCNATQRRQ+  GL+E VELA HA+
Sbjct  14   PLPASTERATTRSSSTTPTAYPWSAGAVPQFPIHSSCNATQRRQLSRGLDETVELAAHAR  73

Query  84   AHILRWGNESEIYRKYFGNRPTMEAVGAYDVIVNGDKANVLFRCDNPDGNCA-LEGWGGH  142
             H+LR+GN SE YRKYFGN P+ E +G ++ IV+ DK++VLFRCD+PDGNCA   GW GH
Sbjct  74   DHLLRFGNSSEFYRKYFGNAPSAEVIGWFERIVSADKSDVLFRCDDPDGNCAANPGWAGH  133

Query  143  WRGANATSETVICDRSYTTRRWLVSMCSQGYTVAGSETNTFWASDLMHRLYHVPAVGQGW  202
            WRG NAT ETVICD SYTTRR L  +CS GYTV+ S TNT+WA DL+HRL+HVPA+G+G+
Sbjct  134  WRGENATDETVICDLSYTTRRPLSQICSLGYTVSESPTNTYWAIDLLHRLFHVPAIGEGY  193

Query  203  VDHFADGYDEVIALAKSNGTESTHDSEALQYFALEAYAFDIAAPGVGCAGE  253
            V H+AD Y+EV+ LAK+N T +  +S+ LQY+AL+ YA+DIA PGVGC G+
Sbjct  194  VGHYADTYEEVLELAKNNATYAVRNSDTLQYYALDVYAYDIAVPGVGCLGD  244



Lambda      K        H        a         alpha
   0.316    0.129    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00035111

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00030673

Length=759


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0754    0.140     1.90     42.6     43.6 

Effective search space used: 967676080


Query= TCONS_00035112

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00035113

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  103     1e-28


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 103 bits (259),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 34/83 (41%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query  101  FRDLNFEIPQGTNVAIVGPSGGGKSTIASILLRFYSPTEGRVLIGGKDITHMNAKSLRRK  160
             ++++  +  G  +A+VGP+G GKST+  ++    SPTEG +L+ G+D+T    KSLR++
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  161  IGIVSQEPVLFSG-TIAENIAYG  182
            IG V Q+P LF   T+ EN+  G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLG  83



Lambda      K        H        a         alpha
   0.319    0.135    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00035115

Length=914


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1175685966


Query= TCONS_00035114

Length=873


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1116829892


Query= TCONS_00030670

Length=400


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00030672

Length=403


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00030671

Length=403


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00035117

Length=873


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1116829892


Query= TCONS_00035116

Length=848


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1080942042


Query= TCONS_00035118

Length=939


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1211573816


Query= TCONS_00035119

Length=873


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1116829892


Query= TCONS_00030674

Length=403


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00030731

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425926 pfam00881, Nitroreductase, Nitroreductase family. The ...  55.9    5e-11


>CDD:425926 pfam00881, Nitroreductase, Nitroreductase family.  The nitroreductase 
family comprises a group of FMN- or FAD-dependent and 
NAD(P)H-dependent enzymes able to metabolize nitrosubstituted 
compounds.
Length=168

 Score = 55.9 bits (135),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query  62   AKARRTIYKLGKNSPVPDSKIEEVVNAAIQHVPSSFNTQSTRLVVLLHAEH-ERLWEIVI  120
             + RR++ K     PVP   +EE++ AA +  PS+ N Q  R  V+   E   RL E  +
Sbjct  1    IRQRRSVRKF-DPEPVPKEVLEEILEAA-RRAPSAGNLQPWRFYVVTDGELRYRLAEAAL  58

Query  121  DTFMQLVQSGAVPETTWKNQTLPKLQGMKNGVGTV  155
            +  +    +  +            LQ    G   +
Sbjct  59   ELLLVEPAAALLLLLRRDANLKLLLQDFLRGAPVL  93



Lambda      K        H        a         alpha
   0.317    0.129    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00030732

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.117    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00030734

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425926 pfam00881, Nitroreductase, Nitroreductase family. The ...  98.2    5e-26


>CDD:425926 pfam00881, Nitroreductase, Nitroreductase family.  The nitroreductase 
family comprises a group of FMN- or FAD-dependent and 
NAD(P)H-dependent enzymes able to metabolize nitrosubstituted 
compounds.
Length=168

 Score = 98.2 bits (245),  Expect = 5e-26, Method: Composition-based stats.
 Identities = 38/176 (22%), Positives = 64/176 (36%), Gaps = 10/176 (6%)

Query  62   AKARRTIYKLGKNSPVPDSKIEEVVNAAIQHVPSSFNTQSTRLVVLLHAEH-ERLWEIVI  120
             + RR++ K     PVP   +EE++ AA +  PS+ N Q  R  V+   E   RL E  +
Sbjct  1    IRQRRSVRKF-DPEPVPKEVLEEILEAA-RRAPSAGNLQPWRFYVVTDGELRYRLAEAAL  58

Query  121  DTFMQLVQSGAVPETTWKNQTLPKLQGMKNGVGTILFYEDPAHIKPFSEKFATYKDYFQP  180
            +  +    +  +            LQ    G   ++             + A  + Y + 
Sbjct  59   ELLLVEPAAALLLLLRRDANLKLLLQDFLRGAPVLIVI---TASLSTYLRKAAERAYREA  115

Query  181  WAEHSNAMHQYFLWTALESLGFGANLQHYNPLIDAPVAKQWDIPSEWRLIAQLVFG  236
              +   A     L  A  SLG G+          A V +   +P + RL+  +  G
Sbjct  116  LLDAGAAAQN--LLLAATSLGLGSCPIGGFD--AAAVRELLGLPDDERLVGLIAVG  167



Lambda      K        H        a         alpha
   0.318    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00035165

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00035166

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462322 pfam07946, DUF1682, Protein of unknown function (DUF16...  280     2e-95


>CDD:462322 pfam07946, DUF1682, Protein of unknown function (DUF1682).  The 
members of this family are all hypothetical eukaryotic proteins 
of unknown function. One member is described as being 
an adipocyte-specific protein, but no evidence of this was 
found.
Length=323

 Score = 280 bits (719),  Expect = 2e-95, Method: Composition-based stats.
 Identities = 102/238 (43%), Positives = 135/238 (57%), Gaps = 36/238 (15%)

Query  1    MVMPLILLIVVFHLWGTRKNRRRAREWAQAHAPALQSEFAVVGFDGVHKFTGAVDSAPAE  60
            +++  +LL V+ +  G RKNRR+A++W  AHAP L+S FA+VGF                
Sbjct  7    IILAFLLLYVLNYFIGKRKNRRKAKKWFAAHAPLLESNFALVGFGDG-------------  53

Query  61   LISPESILKEKSAQEFISYATGRQNVAFVDMSIKLPNRYNPIVYWSDYALSFFFDSWQAP  120
               P S+L E S  EF +YATGR+N A + +++KL  R +      +  L FFFDS   P
Sbjct  54   --KPSSLLIEDSPSEFTTYATGRRNCAGLLVTLKLKKRQDLFSLLFELVLGFFFDSVPPP  111

Query  121  TETFEAIAYTFDGREKDLVPVPANDTSSLKVNNSAYDGFIWAVVHKNHMRKFRLDRYDAS  180
             +  E   Y FDG                       D F++A+V+K  M+K R DRYD S
Sbjct  112  KDRVEIDVYLFDG---------------------KMDPFVFAIVNKKEMKKLRKDRYDLS  150

Query  181  MTFTKDNAKLPSWVTVMTESAEITDTLLTPELIQAIEKAGDSFRYFIVTDQPVDKPLK  238
            +T TKDN KLP W+ VM+ESAEITD LLTPELI+A+ KAGD   Y I+TDQP +KP  
Sbjct  151  LTKTKDNPKLPEWLVVMSESAEITDALLTPELIKALNKAGDLLEYLIITDQPSEKPET  208



Lambda      K        H        a         alpha
   0.321    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00035167

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.146    0.510    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00030747

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  103     1e-28


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 103 bits (259),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 34/83 (41%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query  101  FRDLNFEIPQGTNVAIVGPSGGGKSTIASILLRFYSPTEGRVLIGGKDITHMNAKSLRRK  160
             ++++  +  G  +A+VGP+G GKST+  ++    SPTEG +L+ G+D+T    KSLR++
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  161  IGIVSQEPVLFSG-TIAENIAYG  182
            IG V Q+P LF   T+ EN+  G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLG  83



Lambda      K        H        a         alpha
   0.319    0.135    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00030746

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  103     1e-28


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 103 bits (259),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 34/83 (41%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query  101  FRDLNFEIPQGTNVAIVGPSGGGKSTIASILLRFYSPTEGRVLIGGKDITHMNAKSLRRK  160
             ++++  +  G  +A+VGP+G GKST+  ++    SPTEG +L+ G+D+T    KSLR++
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKE  60

Query  161  IGIVSQEPVLFSG-TIAENIAYG  182
            IG V Q+P LF   T+ EN+  G
Sbjct  61   IGYVFQDPQLFPRLTVRENLRLG  83



Lambda      K        H        a         alpha
   0.319    0.135    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00030676

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00035120

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00030677

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.323    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00030678

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461112 pfam03962, Mnd1, Mnd1 family. This family of proteins ...  97.6    2e-27


>CDD:461112 pfam03962, Mnd1, Mnd1 family.  This family of proteins includes 
MND1 from S. cerevisiae. The mnd1 protein forms a complex 
with hop2 to promote homologous chromosome pairing and meiotic 
double-strand break repair.
Length=60

 Score = 97.6 bits (244),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 0/59 (0%)

Query  14  IVSHLRSTRTCHTLKDLEKMLPSVASINGMQVKEYIQNLTDEGKIRVEKIGSGNWYWCF  72
           I+     T+   TLK+LEK+ P    I    VK+ +Q+L D+G + VEKIGS N+YW F
Sbjct  1   ILEIFHETKDFFTLKELEKLAPKEKGIVSQSVKDVLQSLVDDGLVDVEKIGSSNYYWSF  59



Lambda      K        H        a         alpha
   0.310    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00030679

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.143    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0671    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00030680

Length=757


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 964765776


Query= TCONS_00030681

Length=757


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 964765776


Query= TCONS_00030682

Length=757


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 964765776


Query= TCONS_00035121

Length=757


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 964765776


Query= TCONS_00035122

Length=757


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 964765776


Query= TCONS_00035123

Length=593


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 748708428


Query= TCONS_00030683

Length=757


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 964765776


Query= TCONS_00030684

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369769 pfam08229, SHR3_chaperone, ER membrane protein SH3. Th...  196     4e-66


>CDD:369769 pfam08229, SHR3_chaperone, ER membrane protein SH3.  This family 
of proteins are membrane localized chaperones that are required 
for correct plasma membrane localization of amino acid 
permeases (AAPs). SH3 prevents AAPs proteins from aggregating 
and assists in their correct folding. In the absence of 
SH3, AAPs are retained in the ER.
Length=185

 Score = 196 bits (500),  Expect = 4e-66, Method: Composition-based stats.
 Identities = 66/119 (55%), Positives = 82/119 (69%), Gaps = 1/119 (1%)

Query  6    GSFATFLIVCPVSFFLGIIFSLFPYDYPILWSTAPTPPAHYDYLEAHLRFLHASPPLIPR  65
             SF T LI+   SFFLG++F+ +PYDYP+LW++ PT   H+D    H + LHASPP+I  
Sbjct  3    CSFGTGLILGSTSFFLGVLFANWPYDYPLLWTSPPTQE-HFDNALTHYQTLHASPPIILY  61

Query  66   ILHIVIFLGLAGLVSKLYRPSESNMLFDGASLVLYMCGITVYIANIVKGLRLASAGKYG  124
            ILH VI LGL G   KLY+PSE N LFDGASLVLY+ G+ VY+ NI  GLR    G +G
Sbjct  62   ILHAVIGLGLIGFFIKLYKPSEDNKLFDGASLVLYVFGVCVYLTNIKTGLRSVITGNWG  120



Lambda      K        H        a         alpha
   0.331    0.146    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00035124

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369769 pfam08229, SHR3_chaperone, ER membrane protein SH3. Th...  249     2e-85


>CDD:369769 pfam08229, SHR3_chaperone, ER membrane protein SH3.  This family 
of proteins are membrane localized chaperones that are required 
for correct plasma membrane localization of amino acid 
permeases (AAPs). SH3 prevents AAPs proteins from aggregating 
and assists in their correct folding. In the absence of 
SH3, AAPs are retained in the ER.
Length=185

 Score = 249 bits (638),  Expect = 2e-85, Method: Composition-based stats.
 Identities = 97/179 (54%), Positives = 121/179 (68%), Gaps = 13/179 (7%)

Query  6    GSFATFLIVCPVSFFLGIIFSLFPYDYPILWSTAPTPPAHYDYLEAHLRFLHASPPLIPR  65
             SF T LI+   SFFLG++F+ +PYDYP+LW++ PT   H+D    H + LHASPP+I  
Sbjct  3    CSFGTGLILGSTSFFLGVLFANWPYDYPLLWTSPPTQE-HFDNALTHYQTLHASPPIILY  61

Query  66   ILHIVIFLGLAGLVSKLYRPSESNMLFDGASLVLYMCGITVYIANIVKGLRLASAGKYGE  125
            ILH VI LGL G   KLY+PSE N LFDGASLVLY+ G+ VY+ NI  GLR    G +GE
Sbjct  62   ILHAVIGLGLIGFFIKLYKPSEDNKLFDGASLVLYVFGVCVYLTNIKTGLRSVITGNWGE  121

Query  126  ELATSPEEKDQILNREDSLKVLSASNTILALVLVGVLVLQAGQWYAERKDAQEYESLRK  184
                        ++R   L VL+ASNTILALVLVGVLVLQAG WYAERK+ +E ++  +
Sbjct  122  ------------VDRNQGLAVLAASNTILALVLVGVLVLQAGLWYAERKEQKELKAFYE  168



Lambda      K        H        a         alpha
   0.320    0.137    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00030685

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00030687

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00030686

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00035125

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  236     2e-73


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 236 bits (604),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 177/447 (40%), Gaps = 82/447 (18%)

Query  98   LLDHFIHNVLRIIFPVLEAHQRGHTR---AQAILQALETNKCYLHCCLSVAAIHLKTTEG  154
            LLD+++ NV  ++ P         +     + +L    +N   LH  L+++A HL+++  
Sbjct  2    LLDYYLDNVSPLLSPF------PESSNPFRKVLLPLALSNPALLHALLALSAFHLQSSGP  55

Query  155  FVGEQIDHDIMRHRFEAVSHLCQALSEDINH-------EEILDATLAMIFFHCSVGPADD  207
               +  + +  R++  A+  L +AL+E  +        +++L A L +  F  S G   D
Sbjct  56   --PDLWEREAQRYKSLALRLLQRALAELSSRLSSNSKYDDVLAAILLLCSFEISSGDVSD  113

Query  208  YLPDIPWFDHFQAASNLVNRLGLPTAVPEGNPYVLPPFSMTLTSWIDILGSTMQGRTPQF  267
                  W  H + A +L+   G P +        L  F +   ++ DIL ST  GR P F
Sbjct  114  ------WRVHLEGAKDLIRLRGGP-SKTSSGLSSLLRFLLRNFAYHDILSSTTTGRGPSF  166

Query  268  AHTYRAKHLSG----SSSGLRELMGCDDRVMYLISEITCLDALK----TEGRIDAMAVCS  319
                            SSGL  LMGC + +  LISEI+ L   K    ++  +  +   S
Sbjct  167  PSEEYLDLFGDELELGSSGLDPLMGCSNSLFLLISEISDLAREKRSLRSDNELLPLEFLS  226

Query  320  HVSALGRQLEFTEPVDQTLEHPFSPTTGAIRPEILTKNMTTVFRIAARIYLCSLVPGFDR  379
                L ++L   EP    LE P            L   +T ++R+AA IYL   + G   
Sbjct  227  RAQELEQRLSSWEPRSDDLEIPLDGED---PLSELLLTLTELYRLAALIYLYRRILGLPP  283

Query  380  NQPSNLNLVAAVANTLNYIPSGPNGFDRSLVWPLLITGAFSAPTSQFRAVLAERASLLGD  439
            + P    LV+ +   L+ +P  P     SL+WPL I G  +      R  + +R   L  
Sbjct  284  SSPEVQELVSKLLELLDLLPDSP-LAISSLLWPLFIAGCEAVDDDD-RDFVLDRLDSLE-  340

Query  440  HADLGSFGRMYRLLQEVWRLTDDPADSYYTPEETSSSSASSGSPVPKIERSASPESNSTG  499
             + LG+  R   +L+EVW+  DD   S                                 
Sbjct  341  KSRLGNVRRAREILEEVWKRRDDGELS---------------------------------  367

Query  500  SSMREIKKQQVHWRDVMQRNGWHYLLI  526
                      + WRDVM+R GW  LL 
Sbjct  368  ----------IDWRDVMERLGWDLLLA  384



Lambda      K        H        a         alpha
   0.320    0.134    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 658618710


Query= TCONS_00030688

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00035126

Length=311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  98.3    3e-25


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 98.3 bits (245),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 54/141 (38%), Positives = 69/141 (49%), Gaps = 17/141 (12%)

Query  183  VLRRLIPQAPIEGADWRVHVIKDDGMVNAFV---LPGGKVFVYTGILPICKDEDGLAAVL  239
            V+ RL   A +    W V VIK   + NAF    LPGG+V V TG+L + + ED LAAVL
Sbjct  10   VVERLAAAAGLPLPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVL  69

Query  240  GHEIAHVVAHHPAERMSNN--------ILKVGAVLLISMLFDISGQIPSL----LLNLMY  287
            GHEI H+ A H  E +S           L +  +   +  F   G I  L    L  L+ 
Sbjct  70   GHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFGIIFLLLIGPLAALLT  129

Query  288  --SLPNSRTQEAEADNIGLSM  306
               LP SR QE EAD +G  +
Sbjct  130  LLLLPYSRAQEYEADRLGAEL  150



Lambda      K        H        a         alpha
   0.321    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00030696

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  72.5    2e-17


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 72.5 bits (178),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query  10   AVLLISMLFDISGQIPSL----LLNLMY--SLPNSRTQEAEADNIGLMMMSKACFNPEAA  63
             +   +  F   G I  L    L  L+    LP SR QE EAD +G  +M++A ++P A 
Sbjct  102  LLGAAASGFANFGIIFLLLIGPLAALLTLLLLPYSRAQEYEADRLGAELMARAGYDPRAL  161

Query  64   VGLW---ARMQKAEQEA-PPQFLSTHPSSYNRMEAIRGW  98
            + LW       +A   A  P+ LSTHPS   R+ A+R  
Sbjct  162  IKLWGEIDNNGRASDGALYPELLSTHPSLVERIAALRER  200



Lambda      K        H        a         alpha
   0.318    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00030689

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  139     2e-40


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 139 bits (353),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 72/191 (38%), Positives = 96/191 (50%), Gaps = 21/191 (11%)

Query  183  VLRRLIPQAPIEGADWRVHVIKDDGMVNAFV---LPGGKVFVYTGILPICKDEDGLAAVL  239
            V+ RL   A +    W V VIK   + NAF    LPGG+V V TG+L + + ED LAAVL
Sbjct  10   VVERLAAAAGLPLPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVL  69

Query  240  GHEIAHVVAHHPAERMSNN--------ILKVGAVLLISMLFDISGQIPSL----LLNLMY  287
            GHEI H+ A H  E +S           L +  +   +  F   G I  L    L  L+ 
Sbjct  70   GHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFGIIFLLLIGPLAALLT  129

Query  288  --SLPNSRTQEAEADNIGLMMMSKACFNPEAAVGLW---ARMQKAEQEA-PPQFLSTHPS  341
               LP SR QE EAD +G  +M++A ++P A + LW       +A   A  P+ LSTHPS
Sbjct  130  LLLLPYSRAQEYEADRLGAELMARAGYDPRALIKLWGEIDNNGRASDGALYPELLSTHPS  189

Query  342  SYNRMEAIRGW  352
               R+ A+R  
Sbjct  190  LVERIAALRER  200



Lambda      K        H        a         alpha
   0.320    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 459789232


Query= TCONS_00030692

Length=178
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  127     6e-38


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 127 bits (321),  Expect = 6e-38, Method: Composition-based stats.
 Identities = 63/165 (38%), Positives = 84/165 (51%), Gaps = 21/165 (13%)

Query  2    VNAFV---LPGGKVFVYTGILPICKDEDGLAAVLGHEIAHVVAHHPAERMSNN-------  51
             NAF    LPGG+V V TG+L + + ED LAAVLGHEI H+ A H  E +S         
Sbjct  36   PNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVLGHEIGHIKARHSVESLSIMGGLSLAQ  95

Query  52   -ILKVGAVLLISMLFDISGQIPSL----LLNLMY--SLPNSRTQEAEADNIGLMMMSKAC  104
              L +  +   +  F   G I  L    L  L+    LP SR QE EAD +G  +M++A 
Sbjct  96   LFLALLLLGAAASGFANFGIIFLLLIGPLAALLTLLLLPYSRAQEYEADRLGAELMARAG  155

Query  105  FNPEAAVGLW---ARMQKAEQEA-PPQFLSTHPSSYNRMEAIRGW  145
            ++P A + LW       +A   A  P+ LSTHPS   R+ A+R  
Sbjct  156  YDPRALIKLWGEIDNNGRASDGALYPELLSTHPSLVERIAALRER  200



Lambda      K        H        a         alpha
   0.320    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00030691

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  138     3e-40


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 138 bits (350),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 72/191 (38%), Positives = 96/191 (50%), Gaps = 21/191 (11%)

Query  183  VLRRLIPQAPIEGADWRVHVIKDDGMVNAFV---LPGGKVFVYTGILPICKDEDGLAAVL  239
            V+ RL   A +    W V VIK   + NAF    LPGG+V V TG+L + + ED LAAVL
Sbjct  10   VVERLAAAAGLPLPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVL  69

Query  240  GHEIAHVVAHHPAERMSNN--------ILKVGAVLLISMLFDISGQIPSL----LLNLMY  287
            GHEI H+ A H  E +S           L +  +   +  F   G I  L    L  L+ 
Sbjct  70   GHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFGIIFLLLIGPLAALLT  129

Query  288  --SLPNSRTQEAEADNIGLMMMSKACFNPEAAVGLW---ARMQKAEQEA-PPQFLSTHPS  341
               LP SR QE EAD +G  +M++A ++P A + LW       +A   A  P+ LSTHPS
Sbjct  130  LLLLPYSRAQEYEADRLGAELMARAGYDPRALIKLWGEIDNNGRASDGALYPELLSTHPS  189

Query  342  SYNRMEAIRGW  352
               R+ A+R  
Sbjct  190  LVERIAALRER  200



Lambda      K        H        a         alpha
   0.321    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00030693

Length=311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  98.3    3e-25


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 98.3 bits (245),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 54/141 (38%), Positives = 69/141 (49%), Gaps = 17/141 (12%)

Query  183  VLRRLIPQAPIEGADWRVHVIKDDGMVNAFV---LPGGKVFVYTGILPICKDEDGLAAVL  239
            V+ RL   A +    W V VIK   + NAF    LPGG+V V TG+L + + ED LAAVL
Sbjct  10   VVERLAAAAGLPLPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVL  69

Query  240  GHEIAHVVAHHPAERMSNN--------ILKVGAVLLISMLFDISGQIPSL----LLNLMY  287
            GHEI H+ A H  E +S           L +  +   +  F   G I  L    L  L+ 
Sbjct  70   GHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFGIIFLLLIGPLAALLT  129

Query  288  --SLPNSRTQEAEADNIGLSM  306
               LP SR QE EAD +G  +
Sbjct  130  LLLLPYSRAQEYEADRLGAEL  150



Lambda      K        H        a         alpha
   0.321    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00030694

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  110     9e-30


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 110 bits (277),  Expect = 9e-30, Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 79/155 (51%), Gaps = 17/155 (11%)

Query  183  VLRRLIPQAPIEGADWRVHVIKDDGMVNAFV---LPGGKVFVYTGILPICKDEDGLAAVL  239
            V+ RL   A +    W V VIK   + NAF    LPGG+V V TG+L + + ED LAAVL
Sbjct  10   VVERLAAAAGLPLPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVL  69

Query  240  GHEIAHVVAHHPAERMSNN--------ILKVGAVLLISMLFDISGQIPSL----LLNLMY  287
            GHEI H+ A H  E +S           L +  +   +  F   G I  L    L  L+ 
Sbjct  70   GHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFGIIFLLLIGPLAALLT  129

Query  288  --SLPNSRTQEAEADNIGLMMMSKACFNPEAAVGL  320
               LP SR QE EAD +G  +M++A ++P A + L
Sbjct  130  LLLLPYSRAQEYEADRLGAELMARAGYDPRALIKL  164



Lambda      K        H        a         alpha
   0.321    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00035127

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00030695

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  138     3e-40


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 138 bits (350),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 72/191 (38%), Positives = 96/191 (50%), Gaps = 21/191 (11%)

Query  183  VLRRLIPQAPIEGADWRVHVIKDDGMVNAFV---LPGGKVFVYTGILPICKDEDGLAAVL  239
            V+ RL   A +    W V VIK   + NAF    LPGG+V V TG+L + + ED LAAVL
Sbjct  10   VVERLAAAAGLPLPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVL  69

Query  240  GHEIAHVVAHHPAERMSNN--------ILKVGAVLLISMLFDISGQIPSL----LLNLMY  287
            GHEI H+ A H  E +S           L +  +   +  F   G I  L    L  L+ 
Sbjct  70   GHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFGIIFLLLIGPLAALLT  129

Query  288  --SLPNSRTQEAEADNIGLMMMSKACFNPEAAVGLW---ARMQKAEQEA-PPQFLSTHPS  341
               LP SR QE EAD +G  +M++A ++P A + LW       +A   A  P+ LSTHPS
Sbjct  130  LLLLPYSRAQEYEADRLGAELMARAGYDPRALIKLWGEIDNNGRASDGALYPELLSTHPS  189

Query  342  SYNRMEAIRGW  352
               R+ A+R  
Sbjct  190  LVERIAALRER  200



Lambda      K        H        a         alpha
   0.321    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00035129

Length=182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  114     5e-33


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 114 bits (288),  Expect = 5e-33, Method: Composition-based stats.
 Identities = 56/153 (37%), Positives = 76/153 (50%), Gaps = 18/153 (12%)

Query  15   LVFVYTGILPICKDEDGLAAVLGHEIAHVVAHHPAERMSNN--------ILKVGAVLLIS  66
             V V TG+L + + ED LAAVLGHEI H+ A H  E +S           L +  +   +
Sbjct  48   RVVVTTGLLDLLETEDELAAVLGHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAA  107

Query  67   MLFDISGQIPSL----LLNLMY--SLPNSRTQEAEADNIGLMMMSKACFNPEAAVGLW--  118
              F   G I  L    L  L+    LP SR QE EAD +G  +M++A ++P A + LW  
Sbjct  108  SGFANFGIIFLLLIGPLAALLTLLLLPYSRAQEYEADRLGAELMARAGYDPRALIKLWGE  167

Query  119  -ARMQKAEQEA-PPQFLSTHPSSYNRMEAIRGW  149
                 +A   A  P+ LSTHPS   R+ A+R  
Sbjct  168  IDNNGRASDGALYPELLSTHPSLVERIAALRER  200



Lambda      K        H        a         alpha
   0.322    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00035128

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  138     3e-40


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 138 bits (350),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 72/191 (38%), Positives = 96/191 (50%), Gaps = 21/191 (11%)

Query  183  VLRRLIPQAPIEGADWRVHVIKDDGMVNAFV---LPGGKVFVYTGILPICKDEDGLAAVL  239
            V+ RL   A +    W V VIK   + NAF    LPGG+V V TG+L + + ED LAAVL
Sbjct  10   VVERLAAAAGLPLPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVL  69

Query  240  GHEIAHVVAHHPAERMSNN--------ILKVGAVLLISMLFDISGQIPSL----LLNLMY  287
            GHEI H+ A H  E +S           L +  +   +  F   G I  L    L  L+ 
Sbjct  70   GHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFGIIFLLLIGPLAALLT  129

Query  288  --SLPNSRTQEAEADNIGLMMMSKACFNPEAAVGLW---ARMQKAEQEA-PPQFLSTHPS  341
               LP SR QE EAD +G  +M++A ++P A + LW       +A   A  P+ LSTHPS
Sbjct  130  LLLLPYSRAQEYEADRLGAELMARAGYDPRALIKLWGEIDNNGRASDGALYPELLSTHPS  189

Query  342  SYNRMEAIRGW  352
               R+ A+R  
Sbjct  190  LVERIAALRER  200



Lambda      K        H        a         alpha
   0.321    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00035130

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  115     4e-31


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 115 bits (289),  Expect = 4e-31, Method: Composition-based stats.
 Identities = 60/159 (38%), Positives = 81/159 (51%), Gaps = 17/159 (11%)

Query  183  VLRRLIPQAPIEGADWRVHVIKDDGMVNAFV---LPGGKVFVYTGILPICKDEDGLAAVL  239
            V+ RL   A +    W V VIK   + NAF    LPGG+V V TG+L + + ED LAAVL
Sbjct  10   VVERLAAAAGLPLPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVL  69

Query  240  GHEIAHVVAHHPAERMSNN--------ILKVGAVLLISMLFDISGQIPSL----LLNLMY  287
            GHEI H+ A H  E +S           L +  +   +  F   G I  L    L  L+ 
Sbjct  70   GHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFGIIFLLLIGPLAALLT  129

Query  288  --SLPNSRTQEAEADNIGLMMMSKACFNPEAAVGLFGRA  324
               LP SR QE EAD +G  +M++A ++P A + L+G  
Sbjct  130  LLLLPYSRAQEYEADRLGAELMARAGYDPRALIKLWGEI  168



Lambda      K        H        a         alpha
   0.322    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00035132

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  129     3e-36


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 129 bits (325),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 69/182 (38%), Positives = 92/182 (51%), Gaps = 21/182 (12%)

Query  183  VLRRLIPQAPIEGADWRVHVIKDDGMVNAFV---LPGGKVFVYTGILPICKDEDGLAAVL  239
            V+ RL   A +    W V VIK   + NAF    LPGG+V V TG+L + + ED LAAVL
Sbjct  10   VVERLAAAAGLPLPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVL  69

Query  240  GHEIAHVVAHHPAERMSNN--------ILKVGAVLLISMLFDISGQIPSL----LLNLMY  287
            GHEI H+ A H  E +S           L +  +   +  F   G I  L    L  L+ 
Sbjct  70   GHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFGIIFLLLIGPLAALLT  129

Query  288  --SLPNSRTQEAEADNIGLMMMSKACFNPEAAVGLW---ARMQKAEQEA-PPQFLSTHPS  341
               LP SR QE EAD +G  +M++A ++P A + LW       +A   A  P+ LSTHPS
Sbjct  130  LLLLPYSRAQEYEADRLGAELMARAGYDPRALIKLWGEIDNNGRASDGALYPELLSTHPS  189

Query  342  VS  343
            + 
Sbjct  190  LV  191



Lambda      K        H        a         alpha
   0.320    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00035133

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  134     2e-38


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 134 bits (340),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 72/191 (38%), Positives = 96/191 (50%), Gaps = 22/191 (12%)

Query  183  VLRRLIPQAPIEGADWRVHVIKDDGMVNAFV---LPGGKVFVYTGILPICKDEDGLAAVL  239
            V+ RL   A +    W V VIK   + NAF    LPGG+V V TG+L + + ED LAAVL
Sbjct  10   VVERLAAAAGLPLPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVL  69

Query  240  GHEIAHVVAHHPAERMSNN--------ILKVGAVLLISMLFDISGQIPSL----LLNLMY  287
            GHEI H+ A H  E +S           L +  +   +  F   G I  L    L  L+ 
Sbjct  70   GHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFGIIFLLLIGPLAALLT  129

Query  288  --SLPNSRTQEAEADNIGL-MMSKACFNPEAAVGLW---ARMQKAEQEA-PPQFLSTHPS  340
               LP SR QE EAD +G  +M++A ++P A + LW       +A   A  P+ LSTHPS
Sbjct  130  LLLLPYSRAQEYEADRLGAELMARAGYDPRALIKLWGEIDNNGRASDGALYPELLSTHPS  189

Query  341  SYNRMEAIRGW  351
               R+ A+R  
Sbjct  190  LVERIAALRER  200



Lambda      K        H        a         alpha
   0.320    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0858    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00035131

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  108     1e-28


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 108 bits (272),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 64/191 (34%), Positives = 85/191 (45%), Gaps = 37/191 (19%)

Query  183  VLRRLIPQAPIEGADWRVHVIKDDGMVNAFV---LPGGKVFVYTGILPICKDEDGLAAVL  239
            V+ RL   A +    W V VIK   + NAF    LPGG+V V TG+L + + ED LAAVL
Sbjct  10   VVERLAAAAGLPLPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVL  69

Query  240  GHEIAHVVAHHPAERMSNN--------ILKVGAVLLISMLFDISGQIPSL----LLNLMY  287
            GHEI H+ A H  E +S           L +  +   +  F   G I  L    L  L+ 
Sbjct  70   GHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFGIIFLLLIGPLAALLT  129

Query  288  --SLPNS----------------KACFNPEAAVGLW---ARMQKAEQEA-PPQFLSTHPS  325
               LP S                +A ++P A + LW       +A   A  P+ LSTHPS
Sbjct  130  LLLLPYSRAQEYEADRLGAELMARAGYDPRALIKLWGEIDNNGRASDGALYPELLSTHPS  189

Query  326  SYNRMEAIRGW  336
               R+ A+R  
Sbjct  190  LVERIAALRER  200



Lambda      K        H        a         alpha
   0.321    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00030690

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  138     3e-40


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 138 bits (350),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 72/191 (38%), Positives = 96/191 (50%), Gaps = 21/191 (11%)

Query  183  VLRRLIPQAPIEGADWRVHVIKDDGMVNAFV---LPGGKVFVYTGILPICKDEDGLAAVL  239
            V+ RL   A +    W V VIK   + NAF    LPGG+V V TG+L + + ED LAAVL
Sbjct  10   VVERLAAAAGLPLPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVL  69

Query  240  GHEIAHVVAHHPAERMSNN--------ILKVGAVLLISMLFDISGQIPSL----LLNLMY  287
            GHEI H+ A H  E +S           L +  +   +  F   G I  L    L  L+ 
Sbjct  70   GHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFGIIFLLLIGPLAALLT  129

Query  288  --SLPNSRTQEAEADNIGLMMMSKACFNPEAAVGLW---ARMQKAEQEA-PPQFLSTHPS  341
               LP SR QE EAD +G  +M++A ++P A + LW       +A   A  P+ LSTHPS
Sbjct  130  LLLLPYSRAQEYEADRLGAELMARAGYDPRALIKLWGEIDNNGRASDGALYPELLSTHPS  189

Query  342  SYNRMEAIRGW  352
               R+ A+R  
Sbjct  190  LVERIAALRER  200



Lambda      K        H        a         alpha
   0.321    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00035135

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  140     2e-40


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 140 bits (354),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 72/191 (38%), Positives = 96/191 (50%), Gaps = 21/191 (11%)

Query  183  VLRRLIPQAPIEGADWRVHVIKDDGMVNAFV---LPGGKVFVYTGILPICKDEDGLAAVL  239
            V+ RL   A +    W V VIK   + NAF    LPGG+V V TG+L + + ED LAAVL
Sbjct  10   VVERLAAAAGLPLPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVL  69

Query  240  GHEIAHVVAHHPAERMSNN--------ILKVGAVLLISMLFDISGQIPSL----LLNLMY  287
            GHEI H+ A H  E +S           L +  +   +  F   G I  L    L  L+ 
Sbjct  70   GHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFGIIFLLLIGPLAALLT  129

Query  288  --SLPNSRTQEAEADNIGLMMMSKACFNPEAAVGLW---ARMQKAEQEA-PPQFLSTHPS  341
               LP SR QE EAD +G  +M++A ++P A + LW       +A   A  P+ LSTHPS
Sbjct  130  LLLLPYSRAQEYEADRLGAELMARAGYDPRALIKLWGEIDNNGRASDGALYPELLSTHPS  189

Query  342  SYNRMEAIRGW  352
               R+ A+R  
Sbjct  190  LVERIAALRER  200



Lambda      K        H        a         alpha
   0.320    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 459789232


Query= TCONS_00035134

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  87.5    3e-21


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 87.5 bits (217),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 63/131 (48%), Gaps = 17/131 (13%)

Query  183  VLRRLIPQAPIEGADWRVHVIKDDGMVNAFV---LPGGKVFVYTGILPICKDEDGLAAVL  239
            V+ RL   A +    W V VIK   + NAF    LPGG+V V TG+L + + ED LAAVL
Sbjct  10   VVERLAAAAGLPLPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVL  69

Query  240  GHEIAHVVAHHPAERMSNN--------ILKVGAVLLISMLFDISGQIPSL----LLNLMY  287
            GHEI H+ A H  E +S           L +  +   +  F   G I  L    L  L+ 
Sbjct  70   GHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFGIIFLLLIGPLAALLT  129

Query  288  --SLPNSRTQE  296
               LP SR QE
Sbjct  130  LLLLPYSRAQE  140



Lambda      K        H        a         alpha
   0.322    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00035136

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  138     3e-40


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 138 bits (350),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 72/191 (38%), Positives = 96/191 (50%), Gaps = 21/191 (11%)

Query  183  VLRRLIPQAPIEGADWRVHVIKDDGMVNAFV---LPGGKVFVYTGILPICKDEDGLAAVL  239
            V+ RL   A +    W V VIK   + NAF    LPGG+V V TG+L + + ED LAAVL
Sbjct  10   VVERLAAAAGLPLPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVL  69

Query  240  GHEIAHVVAHHPAERMSNN--------ILKVGAVLLISMLFDISGQIPSL----LLNLMY  287
            GHEI H+ A H  E +S           L +  +   +  F   G I  L    L  L+ 
Sbjct  70   GHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFGIIFLLLIGPLAALLT  129

Query  288  --SLPNSRTQEAEADNIGLMMMSKACFNPEAAVGLW---ARMQKAEQEA-PPQFLSTHPS  341
               LP SR QE EAD +G  +M++A ++P A + LW       +A   A  P+ LSTHPS
Sbjct  130  LLLLPYSRAQEYEADRLGAELMARAGYDPRALIKLWGEIDNNGRASDGALYPELLSTHPS  189

Query  342  SYNRMEAIRGW  352
               R+ A+R  
Sbjct  190  LVERIAALRER  200



Lambda      K        H        a         alpha
   0.321    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00035137

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  111     6e-30


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 111 bits (280),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 79/155 (51%), Gaps = 17/155 (11%)

Query  183  VLRRLIPQAPIEGADWRVHVIKDDGMVNAFV---LPGGKVFVYTGILPICKDEDGLAAVL  239
            V+ RL   A +    W V VIK   + NAF    LPGG+V V TG+L + + ED LAAVL
Sbjct  10   VVERLAAAAGLPLPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVL  69

Query  240  GHEIAHVVAHHPAERMSNN--------ILKVGAVLLISMLFDISGQIPSL----LLNLMY  287
            GHEI H+ A H  E +S           L +  +   +  F   G I  L    L  L+ 
Sbjct  70   GHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFGIIFLLLIGPLAALLT  129

Query  288  --SLPNSRTQEAEADNIGLMMMSKACFNPEAAVGL  320
               LP SR QE EAD +G  +M++A ++P A + L
Sbjct  130  LLLLPYSRAQEYEADRLGAELMARAGYDPRALIKL  164



Lambda      K        H        a         alpha
   0.321    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00030697

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48. Peptid...  139     2e-40


>CDD:426263 pfam01435, Peptidase_M48, Peptidase family M48.  Peptidase_M48 
is the largely extracellular catalytic region of CAAX prenyl 
protease homologs such as Human FACE-1 protease. These are 
metallopeptidases, with the characteristic HExxH motif giving 
the two histidine-zinc-ligands and an adjacent glutamate 
on the next helix being the third. The whole molecule folds 
to form a deep groove/cleft into which the substrate can fit.
Length=201

 Score = 139 bits (351),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 72/191 (38%), Positives = 97/191 (51%), Gaps = 21/191 (11%)

Query  183  VLRRLIPQAPIEGADWRVHVIKDDGMVNAFV---LPGGKVFVYTGILPICKDEDGLAAVL  239
            V+ RL   A +    W V VIK   + NAF    LPGG+V V TG+L + + ED LAAVL
Sbjct  10   VVERLAAAAGLPLPPWYVVVIKSSPVPNAFAYGLLPGGRVVVTTGLLDLLETEDELAAVL  69

Query  240  GHEIAHVVAHHPAERMSNN--------ILKVGAVLLISMLFDISGQIPSL----LLNLMY  287
            GHEI H+ A H  E +S           L +  +   +  F   G I  L    L  L+ 
Sbjct  70   GHEIGHIKARHSVESLSIMGGLSLAQLFLALLLLGAAASGFANFGIIFLLLIGPLAALLT  129

Query  288  --SLPNSRTQEAEADNIGLMMMSKACFNPEAAVGLW---ARMQKAEQEA-PPQFLSTHPS  341
               LP SR QE EAD +G  +M++A ++P A + LW       +A   A  P+ LSTHPS
Sbjct  130  LLLLPYSRAQEYEADRLGAELMARAGYDPRALIKLWGEIDNNGRASDGALYPELLSTHPS  189

Query  342  VSLRMEAIRGW  352
            +  R+ A+R  
Sbjct  190  LVERIAALRER  200



Lambda      K        H        a         alpha
   0.321    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00030698

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  508     1e-177


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 508 bits (1311),  Expect = 1e-177, Method: Composition-based stats.
 Identities = 205/516 (40%), Positives = 316/516 (61%), Gaps = 30/516 (6%)

Query  38   ISKTVQTSLGPYGRNKIVINHLQKMVLTSDAATILRELDVVHPAAKLLVMASQQQDAEMG  97
            ++  V+TSLGP G +K+++N    + +T+D ATIL+EL++ HPAAKLLV A++ QD E+G
Sbjct  1    LADIVRTSLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVG  60

Query  98   DGTNMVIILAGELLKKAEELLRMGLKTSDITQGYEKAQNYALKVLEDLEVDRLKELRSQE  157
            DGT  V++LAGELL++AE+LL  G+  + I +GYEKA   AL++L+ + +    E   +E
Sbjct  61   DGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSI-ISIPVEDVDRE  119

Query  158  ELCKALRTVVASKQFGTE-DLLSSLVAEAVLAVLPKNPVNFNVDNVRVVKIMGGSLEQSR  216
            +L K  RT ++SK    E D L+ LV +AVLA+ PKN  +F++ N+ VVKI+GGSLE S 
Sbjct  120  DLLKVARTSLSSKIISRESDFLAKLVVDAVLAI-PKNDGSFDLGNIGVVKILGGSLEDSE  178

Query  217  VIKGMVFGREPEGT--IKKARKAKVGVFSCPIDISQTETKGTVLLKNAQDMLNFSKGEED  274
            ++ G+V  + P      K+   AKV + +C ++  +TETK TV+L +A+ +  F K EE+
Sbjct  179  LVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKAEEE  238

Query  275  RLEATIKELYDSGLRVVVAGSSVGDLALHYLNRFNILVVKILSKFELRRLCRVVGATPLA  334
            ++   ++++ DSG+ VVV    + DLALH+L +  I+ ++ + K +L RL +  GA  ++
Sbjct  239  QILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRVKKRDLERLAKATGARAVS  298

Query  335  RLGAPMPDEMGSVDVVETTEIGGDRVTVFRQEEANAVTRTATIVLRGATQNHLDDVERAI  394
             L    PD++G+   VE  +IG ++ T     E     + ATI+LRGAT + LD++ER+I
Sbjct  299  SLDDLTPDDLGTAGKVEEEKIGDEKYTFI---EGCKSPKAATILLRGATDHVLDEIERSI  355

Query  395  DDGVNAVKAITKDPRLVPGAGATEIQLVEKISAFADKTPGLPQYAIRKYAEAFEVIPRTL  454
             D +  VK   +DPR+VPG GA E++L   +  +A    G  Q AI  +AEA EVIP+TL
Sbjct  356  HDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEALEVIPKTL  415

Query  455  AESAGLDATEVLSRLYTAHHRTTKASESEESEEGSSEEEEAYWTTGVDLQAGSSTGTLDA  514
            AE+AGLD  EVL+ L  AH    K                     G+D+    +   +D 
Sbjct  416  AENAGLDPIEVLAELRAAHASGEK-------------------HAGIDV---ETGEIIDM  453

Query  515  VDEGILDLLASKSWAIRLASESARTVLSVDQIIVAR  550
             + G++D L  K  A++ A+E+A T+L +D II A+
Sbjct  454  KEAGVVDPLKVKRQALKSATEAASTILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.314    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 709853300


Query= TCONS_00035138

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  325     9e-109


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 325 bits (835),  Expect = 9e-109, Method: Composition-based stats.
 Identities = 125/344 (36%), Positives = 195/344 (57%), Gaps = 27/344 (8%)

Query  2    GGSLEQSRVIKGMVFGREPEGT--IKKARKAKVGVFSCPIDISQTETKGTVLLKNAQDML  59
            GGSLE S ++ G+V  + P      K+   AKV + +C ++  +TETK TV+L +A+ + 
Sbjct  171  GGSLEDSELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLE  230

Query  60   NFSKGEEDRLEATIKELYDSGLRVVVAGSSVGDLALHYLNRFNILVVKILSKFELRRLCR  119
             F K EE+++   ++++ DSG+ VVV    + DLALH+L +  I+ ++ + K +L RL +
Sbjct  231  RFLKAEEEQILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRVKKRDLERLAK  290

Query  120  VVGATPLARLGAPMPDEMGSVDVVETTEIGGDRVTVFRQEEANAVTRTATIVLRGATQNH  179
              GA  ++ L    PD++G+   VE  +IG ++ T     E     + ATI+LRGAT + 
Sbjct  291  ATGARAVSSLDDLTPDDLGTAGKVEEEKIGDEKYTFI---EGCKSPKAATILLRGATDHV  347

Query  180  LDDVERAIDDGVNAVKAITKDPRLVPGAGATEIQLVEKISAFADKTPGLPQYAIRKYAEA  239
            LD++ER+I D +  VK   +DPR+VPG GA E++L   +  +A    G  Q AI  +AEA
Sbjct  348  LDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEA  407

Query  240  FEVIPRTLAESAGLDATEVLSRLYTAHHRTTKASESEESEEGSSEEEEAYWTTGVDLQAG  299
             EVIP+TLAE+AGLD  EVL+ L  AH    K                     G+D+   
Sbjct  408  LEVIPKTLAENAGLDPIEVLAELRAAHASGEK-------------------HAGIDV---  445

Query  300  SSTGTLDAVDEGILDLLASKSWAIRLASESARTVLSVDQIIVAR  343
             +   +D  + G++D L  K  A++ A+E+A T+L +D II A+
Sbjct  446  ETGEIIDMKEAGVVDPLKVKRQALKSATEAASTILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.313    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00030699

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  509     9e-178


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 509 bits (1312),  Expect = 9e-178, Method: Composition-based stats.
 Identities = 205/516 (40%), Positives = 316/516 (61%), Gaps = 30/516 (6%)

Query  38   ISKTVQTSLGPYGRNKIVINHLQKMVLTSDAATILRELDVVHPAAKLLVMASQQQDAEMG  97
            ++  V+TSLGP G +K+++N    + +T+D ATIL+EL++ HPAAKLLV A++ QD E+G
Sbjct  1    LADIVRTSLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVG  60

Query  98   DGTNMVIILAGELLKKAEELLRMGLKTSDITQGYEKAQNYALKVLEGALFDRLKELRSQE  157
            DGT  V++LAGELL++AE+LL  G+  + I +GYEKA   AL++L+ ++     E   +E
Sbjct  61   DGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILD-SIISIPVEDVDRE  119

Query  158  ELCKALRTVVASKQFGTE-DLLSSLVAEAVLAVLPKNPVNFNVDNVRVVKIMGGSLEQSR  216
            +L K  RT ++SK    E D L+ LV +AVLA+ PKN  +F++ N+ VVKI+GGSLE S 
Sbjct  120  DLLKVARTSLSSKIISRESDFLAKLVVDAVLAI-PKNDGSFDLGNIGVVKILGGSLEDSE  178

Query  217  VIKGMVFGREPEGT--IKKARKAKVGVFSCPIDISQTETKGTVLLKNAQDMLNFSKGEED  274
            ++ G+V  + P      K+   AKV + +C ++  +TETK TV+L +A+ +  F K EE+
Sbjct  179  LVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKAEEE  238

Query  275  RLEATIKELYDSGLRVVVAGSSVGDLALHYLNRFNILVVKILSKFELRRLCRVVGATPLA  334
            ++   ++++ DSG+ VVV    + DLALH+L +  I+ ++ + K +L RL +  GA  ++
Sbjct  239  QILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRVKKRDLERLAKATGARAVS  298

Query  335  RLGAPMPDEMGSVDVVETTEIGGDRVTVFRQEEANAVTRTATIVLRGATQNHLDDVERAI  394
             L    PD++G+   VE  +IG ++ T     E     + ATI+LRGAT + LD++ER+I
Sbjct  299  SLDDLTPDDLGTAGKVEEEKIGDEKYTFI---EGCKSPKAATILLRGATDHVLDEIERSI  355

Query  395  DDGVNAVKAITKDPRLVPGAGATEIQLVEKISAFADKTPGLPQYAIRKYAEAFEVIPRTL  454
             D +  VK   +DPR+VPG GA E++L   +  +A    G  Q AI  +AEA EVIP+TL
Sbjct  356  HDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEALEVIPKTL  415

Query  455  AESAGLDATEVLSRLYTAHHRTTKASESEESEEGSSEEEEAYWTTGVDLQAGSSTGTLDA  514
            AE+AGLD  EVL+ L  AH    K                     G+D+    +   +D 
Sbjct  416  AENAGLDPIEVLAELRAAHASGEK-------------------HAGIDV---ETGEIIDM  453

Query  515  VDEGILDLLASKSWAIRLASESARTVLSVDQIIVAR  550
             + G++D L  K  A++ A+E+A T+L +D II A+
Sbjct  454  KEAGVVDPLKVKRQALKSATEAASTILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.314    0.131    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 709853300


Query= TCONS_00035139

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  325     9e-109


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 325 bits (835),  Expect = 9e-109, Method: Composition-based stats.
 Identities = 125/344 (36%), Positives = 195/344 (57%), Gaps = 27/344 (8%)

Query  2    GGSLEQSRVIKGMVFGREPEGT--IKKARKAKVGVFSCPIDISQTETKGTVLLKNAQDML  59
            GGSLE S ++ G+V  + P      K+   AKV + +C ++  +TETK TV+L +A+ + 
Sbjct  171  GGSLEDSELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLE  230

Query  60   NFSKGEEDRLEATIKELYDSGLRVVVAGSSVGDLALHYLNRFNILVVKILSKFELRRLCR  119
             F K EE+++   ++++ DSG+ VVV    + DLALH+L +  I+ ++ + K +L RL +
Sbjct  231  RFLKAEEEQILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRVKKRDLERLAK  290

Query  120  VVGATPLARLGAPMPDEMGSVDVVETTEIGGDRVTVFRQEEANAVTRTATIVLRGATQNH  179
              GA  ++ L    PD++G+   VE  +IG ++ T     E     + ATI+LRGAT + 
Sbjct  291  ATGARAVSSLDDLTPDDLGTAGKVEEEKIGDEKYTFI---EGCKSPKAATILLRGATDHV  347

Query  180  LDDVERAIDDGVNAVKAITKDPRLVPGAGATEIQLVEKISAFADKTPGLPQYAIRKYAEA  239
            LD++ER+I D +  VK   +DPR+VPG GA E++L   +  +A    G  Q AI  +AEA
Sbjct  348  LDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEA  407

Query  240  FEVIPRTLAESAGLDATEVLSRLYTAHHRTTKASESEESEEGSSEEEEAYWTTGVDLQAG  299
             EVIP+TLAE+AGLD  EVL+ L  AH    K                     G+D+   
Sbjct  408  LEVIPKTLAENAGLDPIEVLAELRAAHASGEK-------------------HAGIDV---  445

Query  300  SSTGTLDAVDEGILDLLASKSWAIRLASESARTVLSVDQIIVAR  343
             +   +D  + G++D L  K  A++ A+E+A T+L +D II A+
Sbjct  446  ETGEIIDMKEAGVVDPLKVKRQALKSATEAASTILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.313    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00035140

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  508     2e-177


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 508 bits (1310),  Expect = 2e-177, Method: Composition-based stats.
 Identities = 205/516 (40%), Positives = 315/516 (61%), Gaps = 30/516 (6%)

Query  38   ISKTVQTSLGPYGRNKIVINHLQKMVLTSDAATILRELDVVHPAAKLLVMASQQQDAEMG  97
            ++  V+TSLGP G +K+++N    + +T+D ATIL+EL++ HPAAKLLV A++ QD E+G
Sbjct  1    LADIVRTSLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVG  60

Query  98   DGTNMVIILAGELLKKAEELLRMGLKTSDITQGYEKAQNYALKVLEGAEVDRLKELRSQE  157
            DGT  V++LAGELL++AE+LL  G+  + I +GYEKA   AL++L+   +    E   +E
Sbjct  61   DGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSI-ISIPVEDVDRE  119

Query  158  ELCKALRTVVASKQFGTE-DLLSSLVAEAVLAVLPKNPVNFNVDNVRVVKIMGGSLEQSR  216
            +L K  RT ++SK    E D L+ LV +AVLA+ PKN  +F++ N+ VVKI+GGSLE S 
Sbjct  120  DLLKVARTSLSSKIISRESDFLAKLVVDAVLAI-PKNDGSFDLGNIGVVKILGGSLEDSE  178

Query  217  VIKGMVFGREPEGT--IKKARKAKVGVFSCPIDISQTETKGTVLLKNAQDMLNFSKGEED  274
            ++ G+V  + P      K+   AKV + +C ++  +TETK TV+L +A+ +  F K EE+
Sbjct  179  LVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKAEEE  238

Query  275  RLEATIKELYDSGLRVVVAGSSVGDLALHYLNRFNILVVKILSKFELRRLCRVVGATPLA  334
            ++   ++++ DSG+ VVV    + DLALH+L +  I+ ++ + K +L RL +  GA  ++
Sbjct  239  QILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRVKKRDLERLAKATGARAVS  298

Query  335  RLGAPMPDEMGSVDVVETTEIGGDRVTVFRQEEANAVTRTATIVLRGATQNHLDDVERAI  394
             L    PD++G+   VE  +IG ++ T     E     + ATI+LRGAT + LD++ER+I
Sbjct  299  SLDDLTPDDLGTAGKVEEEKIGDEKYTFI---EGCKSPKAATILLRGATDHVLDEIERSI  355

Query  395  DDGVNAVKAITKDPRLVPGAGATEIQLVEKISAFADKTPGLPQYAIRKYAEAFEVIPRTL  454
             D +  VK   +DPR+VPG GA E++L   +  +A    G  Q AI  +AEA EVIP+TL
Sbjct  356  HDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEALEVIPKTL  415

Query  455  AESAGLDATEVLSRLYTAHHRTTKASESEESEEGSSEEEEAYWTTGVDLQAGSSTGTLDA  514
            AE+AGLD  EVL+ L  AH    K                     G+D+    +   +D 
Sbjct  416  AENAGLDPIEVLAELRAAHASGEK-------------------HAGIDV---ETGEIIDM  453

Query  515  VDEGILDLLASKSWAIRLASESARTVLSVDQIIVAR  550
             + G++D L  K  A++ A+E+A T+L +D II A+
Sbjct  454  KEAGVVDPLKVKRQALKSATEAASTILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.314    0.131    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 709853300


Query= TCONS_00035141

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  455     3e-157


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 455 bits (1174),  Expect = 3e-157, Method: Composition-based stats.
 Identities = 190/516 (37%), Positives = 294/516 (57%), Gaps = 56/516 (11%)

Query  38   ISKTVQTSLGPYGRNKIVINHLQKMVLTSDAATILRELDVVHPAAKLLVM----------  87
            ++  V+TSLGP G +K+++N    + +T+D ATIL+EL++ HPAAKLLV           
Sbjct  1    LADIVRTSLGPKGMDKMLVNSGGDVTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVG  60

Query  88   ----------------AEELLRMGLKTSDITQGYEKAQNYALKVLEDLEVDRLKELRSQE  131
                            AE+LL  G+  + I +GYEKA   AL++L+ + +    E   +E
Sbjct  61   DGTTTVVVLAGELLEEAEKLLAAGVHPTTIIEGYEKALEKALEILDSI-ISIPVEDVDRE  119

Query  132  ELCKALRTVVASKQFGTE-DLLSSLVAEAVLAVLPKNPVNFNVDNVRVVKIMGGSLEQSR  190
            +L K  RT ++SK    E D L+ LV +AVLA+ PKN  +F++ N+ VVKI+GGSLE S 
Sbjct  120  DLLKVARTSLSSKIISRESDFLAKLVVDAVLAI-PKNDGSFDLGNIGVVKILGGSLEDSE  178

Query  191  VIKGMVFGREPEGT--IKKARKAKVGVFSCPIDISQTETKGTVLLKNAQDMLNFSKGEED  248
            ++ G+V  + P      K+   AKV + +C ++  +TETK TV+L +A+ +  F K EE+
Sbjct  179  LVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLERFLKAEEE  238

Query  249  RLEATIKELYDSGLRVVVAGSSVGDLALHYLNRFNILVVKILSKFELRRLCRVVGATPLA  308
            ++   ++++ DSG+ VVV    + DLALH+L +  I+ ++ + K +L RL +  GA  ++
Sbjct  239  QILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRVKKRDLERLAKATGARAVS  298

Query  309  RLGAPMPDEMGSVDVVETTEIGGDRVTVFRQEEANAVTRTATIVLRGATQNHLDDVERAI  368
             L    PD++G+   VE  +IG ++ T     E     + ATI+LRGAT + LD++ER+I
Sbjct  299  SLDDLTPDDLGTAGKVEEEKIGDEKYTFI---EGCKSPKAATILLRGATDHVLDEIERSI  355

Query  369  DDGVNAVKAITKDPRLVPGAGATEIQLVEKISAFADKTPGLPQYAIRKYAEAFEVIPRTL  428
             D +  VK   +DPR+VPG GA E++L   +  +A    G  Q AI  +AEA EVIP+TL
Sbjct  356  HDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEALEVIPKTL  415

Query  429  AESAGLDATEVLSRLYTAHHRTTKASESEESEEGSSEEEEAYWTTGVDLQAGSSTGTLDA  488
            AE+AGLD  EVL+ L  AH    K                     G+D+    +   +D 
Sbjct  416  AENAGLDPIEVLAELRAAHASGEK-------------------HAGIDV---ETGEIIDM  453

Query  489  VDEGILDLLASKSWAIRLASESARTVLSVDQIIVAR  524
             + G++D L  K  A++ A+E+A T+L +D II A+
Sbjct  454  KEAGVVDPLKVKRQALKSATEAASTILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.314    0.131    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00030700

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  470     2e-163


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 470 bits (1212),  Expect = 2e-163, Method: Composition-based stats.
 Identities = 196/492 (40%), Positives = 300/492 (61%), Gaps = 30/492 (6%)

Query  1    MVLTSDAATILRELDVVHPAAKLLVMASQQQDAEMGDGTNMVIILAGELLKKAEELLRMG  60
            + +T+D ATIL+EL++ HPAAKLLV A++ QD E+GDGT  V++LAGELL++AE+LL  G
Sbjct  25   VTVTNDGATILKELEIQHPAAKLLVEAAKAQDEEVGDGTTTVVVLAGELLEEAEKLLAAG  84

Query  61   LKTSDITQGYEKAQNYALKVLEDLEVDRLKELRSQEELCKALRTVVASKQFGTE-DLLSS  119
            +  + I +GYEKA   AL++L+ + +    E   +E+L K  RT ++SK    E D L+ 
Sbjct  85   VHPTTIIEGYEKALEKALEILDSI-ISIPVEDVDREDLLKVARTSLSSKIISRESDFLAK  143

Query  120  LVAEAVLAVLPKNPVNFNVDNVRVVKIMGGSLEQSRVIKGMVFGREPEGT--IKKARKAK  177
            LV +AVLA+ PKN  +F++ N+ VVKI+GGSLE S ++ G+V  + P      K+   AK
Sbjct  144  LVVDAVLAI-PKNDGSFDLGNIGVVKILGGSLEDSELVDGVVLDKGPLHPDMPKRLENAK  202

Query  178  VGVFSCPIDISQTETKGTVLLKNAQDMLNFSKGEEDRLEATIKELYDSGLRVVVAGSSVG  237
            V + +C ++  +TETK TV+L +A+ +  F K EE+++   ++++ DSG+ VVV    + 
Sbjct  203  VLLLNCSLEYEKTETKATVVLSDAEQLERFLKAEEEQILEIVEKIIDSGVNVVVCQKGID  262

Query  238  DLALHYLNRFNILVVKILSKFELRRLCRVVGATPLARLGAPMPDEMGSVDVVETTEIGGD  297
            DLALH+L +  I+ ++ + K +L RL +  GA  ++ L    PD++G+   VE  +IG +
Sbjct  263  DLALHFLAKNGIMALRRVKKRDLERLAKATGARAVSSLDDLTPDDLGTAGKVEEEKIGDE  322

Query  298  RVTVFRQEEANAVTRTATIVLRGATQNHLDDVERAIDDGVNAVKAITKDPRLVPGAGATE  357
            + T     E     + ATI+LRGAT + LD++ER+I D +  VK   +DPR+VPG GA E
Sbjct  323  KYTFI---EGCKSPKAATILLRGATDHVLDEIERSIHDALCVVKNAIEDPRVVPGGGAVE  379

Query  358  IQLVEKISAFADKTPGLPQYAIRKYAEAFEVIPRTLAESAGLDATEVLSRLYTAHHRTTK  417
            ++L   +  +A    G  Q AI  +AEA EVIP+TLAE+AGLD  EVL+ L  AH    K
Sbjct  380  MELARALREYAKSVSGKEQLAIEAFAEALEVIPKTLAENAGLDPIEVLAELRAAHASGEK  439

Query  418  ASESEESEEGSSEEEEAYWTTGVDLQAGSSTGTLDAVDEGILDLLASKSWAIRLASESAR  477
                                 G+D+    +   +D  + G++D L  K  A++ A+E+A 
Sbjct  440  -------------------HAGIDV---ETGEIIDMKEAGVVDPLKVKRQALKSATEAAS  477

Query  478  TVLSVDQIIVAR  489
            T+L +D II A+
Sbjct  478  TILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.314    0.131    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00035143

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  325     9e-109


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 325 bits (835),  Expect = 9e-109, Method: Composition-based stats.
 Identities = 125/344 (36%), Positives = 195/344 (57%), Gaps = 27/344 (8%)

Query  2    GGSLEQSRVIKGMVFGREPEGT--IKKARKAKVGVFSCPIDISQTETKGTVLLKNAQDML  59
            GGSLE S ++ G+V  + P      K+   AKV + +C ++  +TETK TV+L +A+ + 
Sbjct  171  GGSLEDSELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLE  230

Query  60   NFSKGEEDRLEATIKELYDSGLRVVVAGSSVGDLALHYLNRFNILVVKILSKFELRRLCR  119
             F K EE+++   ++++ DSG+ VVV    + DLALH+L +  I+ ++ + K +L RL +
Sbjct  231  RFLKAEEEQILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRVKKRDLERLAK  290

Query  120  VVGATPLARLGAPMPDEMGSVDVVETTEIGGDRVTVFRQEEANAVTRTATIVLRGATQNH  179
              GA  ++ L    PD++G+   VE  +IG ++ T     E     + ATI+LRGAT + 
Sbjct  291  ATGARAVSSLDDLTPDDLGTAGKVEEEKIGDEKYTFI---EGCKSPKAATILLRGATDHV  347

Query  180  LDDVERAIDDGVNAVKAITKDPRLVPGAGATEIQLVEKISAFADKTPGLPQYAIRKYAEA  239
            LD++ER+I D +  VK   +DPR+VPG GA E++L   +  +A    G  Q AI  +AEA
Sbjct  348  LDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEA  407

Query  240  FEVIPRTLAESAGLDATEVLSRLYTAHHRTTKASESEESEEGSSEEEEAYWTTGVDLQAG  299
             EVIP+TLAE+AGLD  EVL+ L  AH    K                     G+D+   
Sbjct  408  LEVIPKTLAENAGLDPIEVLAELRAAHASGEK-------------------HAGIDV---  445

Query  300  SSTGTLDAVDEGILDLLASKSWAIRLASESARTVLSVDQIIVAR  343
             +   +D  + G++D L  K  A++ A+E+A T+L +D II A+
Sbjct  446  ETGEIIDMKEAGVVDPLKVKRQALKSATEAASTILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.313    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00030701

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. ...  325     9e-109


>CDD:395068 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family 
includes members from the HSP60 chaperone family and the 
TCP-1 (T-complex protein) family.
Length=489

 Score = 325 bits (835),  Expect = 9e-109, Method: Composition-based stats.
 Identities = 125/344 (36%), Positives = 195/344 (57%), Gaps = 27/344 (8%)

Query  2    GGSLEQSRVIKGMVFGREPEGT--IKKARKAKVGVFSCPIDISQTETKGTVLLKNAQDML  59
            GGSLE S ++ G+V  + P      K+   AKV + +C ++  +TETK TV+L +A+ + 
Sbjct  171  GGSLEDSELVDGVVLDKGPLHPDMPKRLENAKVLLLNCSLEYEKTETKATVVLSDAEQLE  230

Query  60   NFSKGEEDRLEATIKELYDSGLRVVVAGSSVGDLALHYLNRFNILVVKILSKFELRRLCR  119
             F K EE+++   ++++ DSG+ VVV    + DLALH+L +  I+ ++ + K +L RL +
Sbjct  231  RFLKAEEEQILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRVKKRDLERLAK  290

Query  120  VVGATPLARLGAPMPDEMGSVDVVETTEIGGDRVTVFRQEEANAVTRTATIVLRGATQNH  179
              GA  ++ L    PD++G+   VE  +IG ++ T     E     + ATI+LRGAT + 
Sbjct  291  ATGARAVSSLDDLTPDDLGTAGKVEEEKIGDEKYTFI---EGCKSPKAATILLRGATDHV  347

Query  180  LDDVERAIDDGVNAVKAITKDPRLVPGAGATEIQLVEKISAFADKTPGLPQYAIRKYAEA  239
            LD++ER+I D +  VK   +DPR+VPG GA E++L   +  +A    G  Q AI  +AEA
Sbjct  348  LDEIERSIHDALCVVKNAIEDPRVVPGGGAVEMELARALREYAKSVSGKEQLAIEAFAEA  407

Query  240  FEVIPRTLAESAGLDATEVLSRLYTAHHRTTKASESEESEEGSSEEEEAYWTTGVDLQAG  299
             EVIP+TLAE+AGLD  EVL+ L  AH    K                     G+D+   
Sbjct  408  LEVIPKTLAENAGLDPIEVLAELRAAHASGEK-------------------HAGIDV---  445

Query  300  SSTGTLDAVDEGILDLLASKSWAIRLASESARTVLSVDQIIVAR  343
             +   +D  + G++D L  K  A++ A+E+A T+L +D II A+
Sbjct  446  ETGEIIDMKEAGVVDPLKVKRQALKSATEAASTILRIDDIIKAK  489



Lambda      K        H        a         alpha
   0.313    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 427850560


Query= TCONS_00035145

Length=187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425742 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-t...  76.3    2e-19


>CDD:425742 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal 
domain.  
Length=67

 Score = 76.3 bits (189),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (2%)

Query  120  FNLKLETVDAASKAKVIKEIKGLLGLSLVDSKKFVESVPKMMKESVPKEEAEKIIETLKA  179
            F++ L +  A  K  VIK ++ + GL L ++K  VE  PK++KE V KEEAE+I + L+ 
Sbjct  1    FDVILTSAGAN-KIAVIKAVREITGLGLKEAKDLVEGAPKVVKEGVSKEEAEEIKKKLEE  59

Query  180  VGAKV  184
             GA V
Sbjct  60   AGATV  64



Lambda      K        H        a         alpha
   0.311    0.124    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00035144

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.123    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00035146

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425742 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-t...  76.3    1e-19


>CDD:425742 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal 
domain.  
Length=67

 Score = 76.3 bits (189),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (2%)

Query  109  FNLKLETVDAASKAKVIKEIKGLLGLSLVDSKKFVESVPKMMKESVPKEEAEKIIETLKA  168
            F++ L +  A  K  VIK ++ + GL L ++K  VE  PK++KE V KEEAE+I + L+ 
Sbjct  1    FDVILTSAGAN-KIAVIKAVREITGLGLKEAKDLVEGAPKVVKEGVSKEEAEEIKKKLEE  59

Query  169  VGAKV  173
             GA V
Sbjct  60   AGATV  64



Lambda      K        H        a         alpha
   0.312    0.126    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00030703

Length=187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425742 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-t...  76.0    3e-19


>CDD:425742 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal 
domain.  
Length=67

 Score = 76.0 bits (188),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (2%)

Query  120  FNLKLETVDAASKAKVIKEIKGLLGLSLVDSKKFVESVPKMMKESVPKEEAEKIIETLKA  179
            F++ L +  A  K  VIK ++ + GL L ++K  VE  PK++KE V KEEAE+I + L+ 
Sbjct  1    FDVILTSAGAN-KIAVIKAVREITGLGLKEAKDLVEGAPKVVKEGVSKEEAEEIKKKLEE  59

Query  180  VGAKV  184
             GA V
Sbjct  60   AGATV  64



Lambda      K        H        a         alpha
   0.311    0.125    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00030702

Length=187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425742 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-t...  75.6    3e-19


>CDD:425742 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal 
domain.  
Length=67

 Score = 75.6 bits (187),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (2%)

Query  120  FNLKLETVDAASKAKVIKEIKGLLGLSLVDSKKFVESVPKMMKESVPKEEAEKIIETLKA  179
            F++ L +  A  K  VIK ++ + GL L ++K  VE  PK++KE V KEEAE+I + L+ 
Sbjct  1    FDVILTSAGAN-KIAVIKAVREITGLGLKEAKDLVEGAPKVVKEGVSKEEAEEIKKKLEE  59

Query  180  VGAKV  184
             GA V
Sbjct  60   AGATV  64



Lambda      K        H        a         alpha
   0.310    0.124    0.328    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00035147

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463342 pfam11754, Velvet, Velvet factor. The velvet factor is...  222     2e-73


>CDD:463342 pfam11754, Velvet, Velvet factor.  The velvet factor is conserved 
in many fungal species and is found to have gained different 
roles depending on the organism's need, expanding the 
conserved role in developmental programmes. The velvet factor 
orthologues can be adapted to the fungal-specific life cycle 
and may be involved in diverse functions such as sclerotia 
formation and toxin production, as in A. parasiticus, nutrition-dependent 
sporulation, as in A. fumigatus, or the microconidia-to-macroconidia 
ratio and cell wall formation, as in 
the heterothallic fungus Fusarium verticilloides.
Length=238

 Score = 222 bits (569),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 82/233 (35%), Positives = 113/233 (48%), Gaps = 8/233 (3%)

Query  26   YHLHIRQQPIAARACGAGDRDRRPVDPPPIIQMLLTDFDPKSQADLDTLQDPRLTVGCLL  85
            Y L + QQPI AR CG GD+DRRP+DPPPI+Q+ + DF+  S+ D+D + +    +   L
Sbjct  1    YRLEVVQQPIRARMCGFGDKDRRPIDPPPIVQLRVFDFNTGSEVDIDEIDNSFFVLQVDL  60

Query  86   LPVSA---ANSWPGSPEADGLWANREDRTTSQRAEENGPGRGTPLLSGKAFVSPFHVELD  142
                     N    S       ++     +     ++     TP  S     +P      
Sbjct  61   WSADGTREVNLVHSSSAPSSSISSAS-SGSYPPPSQSPTSPPTPQSSTAPPSAPPSQARP  119

Query  143  PDPHTAPPHPTSANY-KVETKPGAANPSNGLDLAKVQVPATFFVFPDLSIRSAGVYRLQF  201
                    +P S  Y +       A+     D      P  FFVFPDLS+R+ G +RL+F
Sbjct  120  IATGRVQTNPPSGMYTRNLIGSLVASAFRLPDPEG--KPGIFFVFPDLSVRTEGTFRLRF  177

Query  202  RLMNWGL-VEDTGQSMPVLLEVWSDPFRVYPAKDFPGMRDSSPLTEALKELGF  253
             LMN G  V + G S PVL EV+SDPF VY AK FPGM +S+PL++   E G 
Sbjct  178  SLMNLGATVNEGGGSAPVLAEVFSDPFTVYSAKKFPGMPESTPLSKHFAEQGI  230



Lambda      K        H        a         alpha
   0.317    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00030704

Length=187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425742 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-t...  76.3    2e-19


>CDD:425742 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal 
domain.  
Length=67

 Score = 76.3 bits (189),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (2%)

Query  120  FNLKLETVDAASKAKVIKEIKGLLGLSLVDSKKFVESVPKMMKESVPKEEAEKIIETLKA  179
            F++ L +  A  K  VIK ++ + GL L ++K  VE  PK++KE V KEEAE+I + L+ 
Sbjct  1    FDVILTSAGAN-KIAVIKAVREITGLGLKEAKDLVEGAPKVVKEGVSKEEAEEIKKKLEE  59

Query  180  VGAKV  184
             GA V
Sbjct  60   AGATV  64



Lambda      K        H        a         alpha
   0.310    0.124    0.328    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00035148

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425742 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-t...  68.3    8e-17


>CDD:425742 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal 
domain.  
Length=67

 Score = 68.3 bits (168),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (2%)

Query  83   FNLKLETVDAASKAKVIKEIKGLLGLSLVDSKKFVESVPKMMKESVPKEEAEKIIETLKA  142
            F++ L +  A  K  VIK ++ + GL L ++K  VE  PK++KE V KEEAE+I + L+ 
Sbjct  1    FDVILTSAGAN-KIAVIKAVREITGLGLKEAKDLVEGAPKVVKEGVSKEEAEEIKKKLEE  59

Query  143  VGAKV  147
             GA V
Sbjct  60   AGATV  64



Lambda      K        H        a         alpha
   0.308    0.125    0.319    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00035149

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425742 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-t...  68.6    3e-17


>CDD:425742 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal 
domain.  
Length=67

 Score = 68.6 bits (169),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (2%)

Query  60   FNLKLETVDAASKAKVIKEIKGLLGLSLVDSKKFVESVPKMMKESVPKEEAEKIIETLKA  119
            F++ L +  A  K  VIK ++ + GL L ++K  VE  PK++KE V KEEAE+I + L+ 
Sbjct  1    FDVILTSAGAN-KIAVIKAVREITGLGLKEAKDLVEGAPKVVKEGVSKEEAEEIKKKLEE  59

Query  120  VGAKV  124
             GA V
Sbjct  60   AGATV  64



Lambda      K        H        a         alpha
   0.310    0.126    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00030705

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.121    0.289    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00030706

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463342 pfam11754, Velvet, Velvet factor. The velvet factor is...  220     7e-72


>CDD:463342 pfam11754, Velvet, Velvet factor.  The velvet factor is conserved 
in many fungal species and is found to have gained different 
roles depending on the organism's need, expanding the 
conserved role in developmental programmes. The velvet factor 
orthologues can be adapted to the fungal-specific life cycle 
and may be involved in diverse functions such as sclerotia 
formation and toxin production, as in A. parasiticus, nutrition-dependent 
sporulation, as in A. fumigatus, or the microconidia-to-macroconidia 
ratio and cell wall formation, as in 
the heterothallic fungus Fusarium verticilloides.
Length=238

 Score = 220 bits (563),  Expect = 7e-72, Method: Composition-based stats.
 Identities = 82/233 (35%), Positives = 113/233 (48%), Gaps = 8/233 (3%)

Query  70   YHLHIRQQPIAARACGAGDRDRRPVDPPPIIQMLLTDFDPKSQADLDTLQDPRLTVGCLL  129
            Y L + QQPI AR CG GD+DRRP+DPPPI+Q+ + DF+  S+ D+D + +    +   L
Sbjct  1    YRLEVVQQPIRARMCGFGDKDRRPIDPPPIVQLRVFDFNTGSEVDIDEIDNSFFVLQVDL  60

Query  130  LPVSA---ANSWPGSPEADGLWANREDRTTSQRAEENGPGRGTPLLSGKAFVSPFHVELD  186
                     N    S       ++     +     ++     TP  S     +P      
Sbjct  61   WSADGTREVNLVHSSSAPSSSISSAS-SGSYPPPSQSPTSPPTPQSSTAPPSAPPSQARP  119

Query  187  PDPHTAPPHPTSANY-KVETKPGAANPSNGLDLAKVQVPATFFVFPDLSIRSAGVYRLQF  245
                    +P S  Y +       A+     D      P  FFVFPDLS+R+ G +RL+F
Sbjct  120  IATGRVQTNPPSGMYTRNLIGSLVASAFRLPDPEG--KPGIFFVFPDLSVRTEGTFRLRF  177

Query  246  RLMNWGL-VEDTGQSMPVLLEVWSDPFRVYPAKDFPGMRDSSPLTEALKELGF  297
             LMN G  V + G S PVL EV+SDPF VY AK FPGM +S+PL++   E G 
Sbjct  178  SLMNLGATVNEGGGSAPVLAEVFSDPFTVYSAKKFPGMPESTPLSKHFAEQGI  230



Lambda      K        H        a         alpha
   0.316    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00030707

Length=500


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 619252994


Query= TCONS_00035150

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00030708

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.137    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00030709

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00030710

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462400 pfam08231, SYF2, SYF2 splicing factor. Proteins in thi...  197     4e-64


>CDD:462400 pfam08231, SYF2, SYF2 splicing factor.  Proteins in this family 
are involved in cell cycle progression and pre-mRNA splicing.
Length=152

 Score = 197 bits (502),  Expect = 4e-64, Method: Composition-based stats.
 Identities = 79/177 (45%), Positives = 108/177 (61%), Gaps = 25/177 (14%)

Query  119  AAGEDFERKRAWDWTIDESEKWDRRMEKKQRHRDDVAFQDYTQDARKVYKRQLRQMQPDM  178
             AGED+ERKRA DWT +E+EKWD++ +KK     D  F DY Q A + YKR L+ ++PD+
Sbjct  1    EAGEDYERKRALDWTAEEAEKWDKKKKKK-AKNPDFGFSDYAQAAYRQYKRLLKNIKPDL  59

Query  179  AAYEREKLAAIEKAAANGDLEIVETNDGEMIAVDKNGTFYSTADTIGFTENKPDRAGVDK  238
             AYE++K  A E+                         FY TAD+  + ++KP +  +D+
Sbjct  60   EAYEKQKEKAGER----------------------VEAFYRTADS--YADHKPSKEAIDR  95

Query  239  LVADLRKAEEVRLKKRRERRGDEEPDVTYINEKNKQFNQKLARFYNKYTTEIRDSFE  295
            +V DL K EE RLK  R R  D++ DV YINE+NK+FN+KL RFY+KYT EIR + E
Sbjct  96   MVEDLEKQEEKRLKFSRRRGHDDDADVDYINERNKKFNKKLERFYDKYTAEIRQNLE  152



Lambda      K        H        a         alpha
   0.309    0.123    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00035151

Length=637


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 802285760


Query= TCONS_00030711

Length=316
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462400 pfam08231, SYF2, SYF2 splicing factor. Proteins in thi...  185     4e-59


>CDD:462400 pfam08231, SYF2, SYF2 splicing factor.  Proteins in this family 
are involved in cell cycle progression and pre-mRNA splicing.
Length=152

 Score = 185 bits (471),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 73/167 (44%), Positives = 101/167 (60%), Gaps = 25/167 (15%)

Query  119  AAGEDFERKRAWDWTIDESEKWDRRMEKKQRHRDDVAFQDYTQDARKVYKRQLRQMQPDM  178
             AGED+ERKRA DWT +E+EKWD++ +KK     D  F DY Q A + YKR L+ ++PD+
Sbjct  1    EAGEDYERKRALDWTAEEAEKWDKKKKKK-AKNPDFGFSDYAQAAYRQYKRLLKNIKPDL  59

Query  179  AAYEREKLAAIEKAAANGDLEIVETNDGEMIAVDKNGTFYSTADTIGFTENKPDRAGVDK  238
             AYE++K  A E+                         FY TAD+  + ++KP +  +D+
Sbjct  60   EAYEKQKEKAGER----------------------VEAFYRTADS--YADHKPSKEAIDR  95

Query  239  LVADLRKAEEVRLKKRRERRGDEEPDVTYINEKNKQFNQKLARFYNK  285
            +V DL K EE RLK  R R  D++ DV YINE+NK+FN+KL RFY+K
Sbjct  96   MVEDLEKQEEKRLKFSRRRGHDDDADVDYINERNKKFNKKLERFYDK  142



Lambda      K        H        a         alpha
   0.311    0.123    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0745    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00030712

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462400 pfam08231, SYF2, SYF2 splicing factor. Proteins in thi...  197     2e-65


>CDD:462400 pfam08231, SYF2, SYF2 splicing factor.  Proteins in this family 
are involved in cell cycle progression and pre-mRNA splicing.
Length=152

 Score = 197 bits (504),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 79/177 (45%), Positives = 108/177 (61%), Gaps = 25/177 (14%)

Query  52   AAGEDFERKRAWDWTIDESEKWDRRMEKKQRHRDDVAFQDYTQDARKVYKRQLRQMQPDM  111
             AGED+ERKRA DWT +E+EKWD++ +KK     D  F DY Q A + YKR L+ ++PD+
Sbjct  1    EAGEDYERKRALDWTAEEAEKWDKKKKKK-AKNPDFGFSDYAQAAYRQYKRLLKNIKPDL  59

Query  112  AAYEREKLAAIEKAAANGDLEIVETNDGEMIAVDKNGTFYSTADTIGFTENKPDRAGVDK  171
             AYE++K  A E+                         FY TAD+  + ++KP +  +D+
Sbjct  60   EAYEKQKEKAGER----------------------VEAFYRTADS--YADHKPSKEAIDR  95

Query  172  LVADLRKAEEVRLKKRRERRGDEEPDVTYINEKNKQFNQKLARFYNKYTTEIRDSFE  228
            +V DL K EE RLK  R R  D++ DV YINE+NK+FN+KL RFY+KYT EIR + E
Sbjct  96   MVEDLEKQEEKRLKFSRRRGHDDDADVDYINERNKKFNKKLERFYDKYTAEIRQNLE  152



Lambda      K        H        a         alpha
   0.314    0.128    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00030713

Length=316
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462400 pfam08231, SYF2, SYF2 splicing factor. Proteins in thi...  185     4e-59


>CDD:462400 pfam08231, SYF2, SYF2 splicing factor.  Proteins in this family 
are involved in cell cycle progression and pre-mRNA splicing.
Length=152

 Score = 185 bits (471),  Expect = 4e-59, Method: Composition-based stats.
 Identities = 73/167 (44%), Positives = 101/167 (60%), Gaps = 25/167 (15%)

Query  119  AAGEDFERKRAWDWTIDESEKWDRRMEKKQRHRDDVAFQDYTQDARKVYKRQLRQMQPDM  178
             AGED+ERKRA DWT +E+EKWD++ +KK     D  F DY Q A + YKR L+ ++PD+
Sbjct  1    EAGEDYERKRALDWTAEEAEKWDKKKKKK-AKNPDFGFSDYAQAAYRQYKRLLKNIKPDL  59

Query  179  AAYEREKLAAIEKAAANGDLEIVETNDGEMIAVDKNGTFYSTADTIGFTENKPDRAGVDK  238
             AYE++K  A E+                         FY TAD+  + ++KP +  +D+
Sbjct  60   EAYEKQKEKAGER----------------------VEAFYRTADS--YADHKPSKEAIDR  95

Query  239  LVADLRKAEEVRLKKRRERRGDEEPDVTYINEKNKQFNQKLARFYNK  285
            +V DL K EE RLK  R R  D++ DV YINE+NK+FN+KL RFY+K
Sbjct  96   MVEDLEKQEEKRLKFSRRRGHDDDADVDYINERNKKFNKKLERFYDK  142



Lambda      K        H        a         alpha
   0.311    0.123    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 364709522


Query= TCONS_00035152

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462400 pfam08231, SYF2, SYF2 splicing factor. Proteins in thi...  197     4e-64


>CDD:462400 pfam08231, SYF2, SYF2 splicing factor.  Proteins in this family 
are involved in cell cycle progression and pre-mRNA splicing.
Length=152

 Score = 197 bits (502),  Expect = 4e-64, Method: Composition-based stats.
 Identities = 79/177 (45%), Positives = 108/177 (61%), Gaps = 25/177 (14%)

Query  119  AAGEDFERKRAWDWTIDESEKWDRRMEKKQRHRDDVAFQDYTQDARKVYKRQLRQMQPDM  178
             AGED+ERKRA DWT +E+EKWD++ +KK     D  F DY Q A + YKR L+ ++PD+
Sbjct  1    EAGEDYERKRALDWTAEEAEKWDKKKKKK-AKNPDFGFSDYAQAAYRQYKRLLKNIKPDL  59

Query  179  AAYEREKLAAIEKAAANGDLEIVETNDGEMIAVDKNGTFYSTADTIGFTENKPDRAGVDK  238
             AYE++K  A E+                         FY TAD+  + ++KP +  +D+
Sbjct  60   EAYEKQKEKAGER----------------------VEAFYRTADS--YADHKPSKEAIDR  95

Query  239  LVADLRKAEEVRLKKRRERRGDEEPDVTYINEKNKQFNQKLARFYNKYTTEIRDSFE  295
            +V DL K EE RLK  R R  D++ DV YINE+NK+FN+KL RFY+KYT EIR + E
Sbjct  96   MVEDLEKQEEKRLKFSRRRGHDDDADVDYINERNKKFNKKLERFYDKYTAEIRQNLE  152



Lambda      K        H        a         alpha
   0.309    0.123    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00035153

Length=157
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462400 pfam08231, SYF2, SYF2 splicing factor. Proteins in thi...  153     3e-49


>CDD:462400 pfam08231, SYF2, SYF2 splicing factor.  Proteins in this family 
are involved in cell cycle progression and pre-mRNA splicing.
Length=152

 Score = 153 bits (389),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 62/151 (41%), Positives = 87/151 (58%), Gaps = 24/151 (16%)

Query  2    EKKQRHRDDVAFQDYTQDARKVYKRQLRQMQPDMAAYEREKLAAIEKAAANGDLEIVETN  61
            +KK+    D  F DY Q A + YKR L+ ++PD+ AYE++K  A E+             
Sbjct  26   KKKKAKNPDFGFSDYAQAAYRQYKRLLKNIKPDLEAYEKQKEKAGER-------------  72

Query  62   DGEMIAVDKNGTFYSTADTIGFTENKPDRAGVDKLVADLRKAEEVRLKKRRERRGDEEPD  121
                        FY TAD+  + ++KP +  +D++V DL K EE RLK  R R  D++ D
Sbjct  73   ---------VEAFYRTADS--YADHKPSKEAIDRMVEDLEKQEEKRLKFSRRRGHDDDAD  121

Query  122  VTYINEKNKQFNQKLARFYNKYTTEIRDSFE  152
            V YINE+NK+FN+KL RFY+KYT EIR + E
Sbjct  122  VDYINERNKKFNKKLERFYDKYTAEIRQNLE  152



Lambda      K        H        a         alpha
   0.314    0.131    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00030715

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460899 pfam03366, YEATS, YEATS family. We have named this fam...  149     6e-47


>CDD:460899 pfam03366, YEATS, YEATS family.  We have named this family the 
YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small 
subunit'. This family also contains the GAS41 protein. All 
these proteins are thought to have a transcription stimulatory 
activity.
Length=80

 Score = 149 bits (378),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 51/81 (63%), Positives = 68/81 (84%), Gaps = 1/81 (1%)

Query  41   HTHQWRVFVKGVNDEDISYWLKKVQFKLHETYAQNVRTIEQPPFEVTETGWGEFEIQIKL  100
            HTH+W V+V+G+++EDISY++KKV FKLH ++A  VR +++PPFEVTETGWGEFEI+IK+
Sbjct  1    HTHKWTVYVRGLDNEDISYFIKKVVFKLHPSFANPVRVVKKPPFEVTETGWGEFEIRIKI  60

Query  101  YFVPESGEKPQTLWHSLKLHP  121
            YF     EKP T++H LKLHP
Sbjct  61   YFKD-KDEKPVTIYHDLKLHP  80



Lambda      K        H        a         alpha
   0.312    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00030716

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460899 pfam03366, YEATS, YEATS family. We have named this fam...  146     2e-46


>CDD:460899 pfam03366, YEATS, YEATS family.  We have named this family the 
YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small 
subunit'. This family also contains the GAS41 protein. All 
these proteins are thought to have a transcription stimulatory 
activity.
Length=80

 Score = 146 bits (370),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 51/81 (63%), Positives = 68/81 (84%), Gaps = 1/81 (1%)

Query  41   HTHQWRVFVKGVNDEDISYWLKKVQFKLHETYAQNVRTIEQPPFEVTETGWGEFEIQIKL  100
            HTH+W V+V+G+++EDISY++KKV FKLH ++A  VR +++PPFEVTETGWGEFEI+IK+
Sbjct  1    HTHKWTVYVRGLDNEDISYFIKKVVFKLHPSFANPVRVVKKPPFEVTETGWGEFEIRIKI  60

Query  101  YFVPESGEKPQTLWHSLKLHP  121
            YF     EKP T++H LKLHP
Sbjct  61   YFKD-KDEKPVTIYHDLKLHP  80



Lambda      K        H        a         alpha
   0.314    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00035154

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460899 pfam03366, YEATS, YEATS family. We have named this fam...  149     6e-47


>CDD:460899 pfam03366, YEATS, YEATS family.  We have named this family the 
YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small 
subunit'. This family also contains the GAS41 protein. All 
these proteins are thought to have a transcription stimulatory 
activity.
Length=80

 Score = 149 bits (378),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 51/81 (63%), Positives = 68/81 (84%), Gaps = 1/81 (1%)

Query  41   HTHQWRVFVKGVNDEDISYWLKKVQFKLHETYAQNVRTIEQPPFEVTETGWGEFEIQIKL  100
            HTH+W V+V+G+++EDISY++KKV FKLH ++A  VR +++PPFEVTETGWGEFEI+IK+
Sbjct  1    HTHKWTVYVRGLDNEDISYFIKKVVFKLHPSFANPVRVVKKPPFEVTETGWGEFEIRIKI  60

Query  101  YFVPESGEKPQTLWHSLKLHP  121
            YF     EKP T++H LKLHP
Sbjct  61   YFKD-KDEKPVTIYHDLKLHP  80



Lambda      K        H        a         alpha
   0.312    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00030717

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.123    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00030718

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460899 pfam03366, YEATS, YEATS family. We have named this fam...  150     3e-47


>CDD:460899 pfam03366, YEATS, YEATS family.  We have named this family the 
YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small 
subunit'. This family also contains the GAS41 protein. All 
these proteins are thought to have a transcription stimulatory 
activity.
Length=80

 Score = 150 bits (382),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 51/81 (63%), Positives = 68/81 (84%), Gaps = 1/81 (1%)

Query  61   HTHQWRVFVKGVNDEDISYWLKKVQFKLHETYAQNVRTIEQPPFEVTETGWGEFEIQIKL  120
            HTH+W V+V+G+++EDISY++KKV FKLH ++A  VR +++PPFEVTETGWGEFEI+IK+
Sbjct  1    HTHKWTVYVRGLDNEDISYFIKKVVFKLHPSFANPVRVVKKPPFEVTETGWGEFEIRIKI  60

Query  121  YFVPESGEKPQTLWHSLKLHP  141
            YF     EKP T++H LKLHP
Sbjct  61   YFKD-KDEKPVTIYHDLKLHP  80



Lambda      K        H        a         alpha
   0.313    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00030719

Length=347


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00030720

Length=464


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 573605296


Query= TCONS_00035157

Length=329


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 385413556


Query= TCONS_00030722

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00030721

Length=464


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 573605296


Query= TCONS_00030723

Length=249


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00035159

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00030724

Length=294


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335349248


Query= TCONS_00030725

Length=847


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1079506528


Query= TCONS_00035161

Length=380


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00035162

Length=370


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00030726

Length=380


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00030727

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00035163

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461826 pfam06090, Ins_P5_2-kin, Inositol-pentakisphosphate 2-...  167     4e-50


>CDD:461826 pfam06090, Ins_P5_2-kin, Inositol-pentakisphosphate 2-kinase. 
 This is a family of inositol-pentakisphosphate 2-kinases (EC 
2.7.1.158) (also known as inositol 1,3,4,5,6-pentakisphosphate 
2-kinase, Ins(1,3,4,5,6)P5 2-kinase) and InsP5 2-kinase). 
This enzyme phosphorylates Ins(1,3,4,5,6)P5 to form Ins(1,2,3,4,5,6)P6 
(also known as InsP6 or phytate). InsP6 is involved 
in many processes such as mRNA export, nonhomologous 
end-joining, endocytosis and ion channel regulation.
Length=319

 Score = 167 bits (426),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 135/367 (37%), Gaps = 125/367 (34%)

Query  17   YLAEGGANIIYRIASAPSPCHTGPTDTYSSSGPHFIVPPEFKGKLLRLRKETKTGISY--  74
            Y  EG ANI++         +TGP+            P   +GK+LRLRK          
Sbjct  1    YRGEGAANIVFS--------YTGPS------------PAALRGKVLRLRKAPPGWRDRKD  40

Query  75   --------QEIARNFDRTIRPLFSPDELVDQELVYLPSGLVQRCNEQLSAAERNGERPKK  126
                    +EI       +RPL     +V  ELV L    ++  N++L A     +RP  
Sbjct  41   LESSAEKEEEIVDFVRHVMRPLLGSKYVVPGELVRLDREFLEALNKKLQA-----QRPAA  95

Query  127  RQG-VYLSVTEPFGLLVTDMT-----TFATPNTVLAELKPKW-LLQSPSAPVNA------  173
            R+    +  T  + LL+ DMT     +  +  T+  E+KPKW  LQSPSAP++A      
Sbjct  96   RRRKADIDTTRDYALLLPDMTLLPGGSSKSSPTLCVEIKPKWGFLQSPSAPLSAETKEIK  155

Query  174  -RRCRTCALRDMKNYQSRRAGGSEEIS-FCPLNLVSDKFENVLRAAK------------Y  219
             R CR C  + +K       G  + IS +CPL+L S     V RA K            +
Sbjct  156  RRVCRFCMHQALKL----AEGKIKRISKYCPLDLFSGDEARVRRALKALLATPQNNLKVF  211

Query  220  VKGCEDQT---------------------------RLARILYRNPTLQKLLTHQKAMRDV  252
            + G                                 L   L  +P L++LL         
Sbjct  212  LNGSLVYPGDGGGSALTDAKAIQATDGELREAFVELLLEALLTSPVLRRLLQL-------  264

Query  253  GLHGPSAQSREQSLAMTLRDCTMFIKIPRDEMG------------PVEVRLGDLDLKTGA  300
                       Q LAMT +DC++ I+     +               EV++ DLD K   
Sbjct  265  -----------QLLAMTAKDCSIMIRFSSSSVLLNVYLDSSGRTFAYEVKVIDLDPKPLK  313

Query  301  GGKAQYW  307
              K + W
Sbjct  314  --KLEKW  318



Lambda      K        H        a         alpha
   0.318    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00030728

Length=311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461826 pfam06090, Ins_P5_2-kin, Inositol-pentakisphosphate 2-...  153     7e-45


>CDD:461826 pfam06090, Ins_P5_2-kin, Inositol-pentakisphosphate 2-kinase. 
 This is a family of inositol-pentakisphosphate 2-kinases (EC 
2.7.1.158) (also known as inositol 1,3,4,5,6-pentakisphosphate 
2-kinase, Ins(1,3,4,5,6)P5 2-kinase) and InsP5 2-kinase). 
This enzyme phosphorylates Ins(1,3,4,5,6)P5 to form Ins(1,2,3,4,5,6)P6 
(also known as InsP6 or phytate). InsP6 is involved 
in many processes such as mRNA export, nonhomologous 
end-joining, endocytosis and ion channel regulation.
Length=319

 Score = 153 bits (388),  Expect = 7e-45, Method: Composition-based stats.
 Identities = 89/351 (25%), Positives = 132/351 (38%), Gaps = 117/351 (33%)

Query  17   YLAEGGANIIYRIASAPSPCHTGPTDTYSSSGPHFIVPPEFKGKLLRLRKETKTGISY--  74
            Y  EG ANI++         +TGP+            P   +GK+LRLRK          
Sbjct  1    YRGEGAANIVFS--------YTGPS------------PAALRGKVLRLRKAPPGWRDRKD  40

Query  75   --------QEIARNFDRTIRPLFSPDELVDQELVYLPSGLVQRCNEQLSAAERNGERPKK  126
                    +EI       +RPL     +V  ELV L    ++  N++L A     +RP  
Sbjct  41   LESSAEKEEEIVDFVRHVMRPLLGSKYVVPGELVRLDREFLEALNKKLQA-----QRPAA  95

Query  127  RQG-VYLSVTEPFGLLVTDMT-----TFATPNTVLAELKPKW-LLQSPSAPVNA------  173
            R+    +  T  + LL+ DMT     +  +  T+  E+KPKW  LQSPSAP++A      
Sbjct  96   RRRKADIDTTRDYALLLPDMTLLPGGSSKSSPTLCVEIKPKWGFLQSPSAPLSAETKEIK  155

Query  174  -RRCRTCALRDMKNYQSRRAGGSEEIS-FCPLNLVSDKFENVLRAAK------------Y  219
             R CR C  + +K       G  + IS +CPL+L S     V RA K            +
Sbjct  156  RRVCRFCMHQALKL----AEGKIKRISKYCPLDLFSGDEARVRRALKALLATPQNNLKVF  211

Query  220  VKGCEDQT---------------------------RLARILYRNPTLQKLLTHQKAMRDV  252
            + G                                 L   L  +P L++LL         
Sbjct  212  LNGSLVYPGDGGGSALTDAKAIQATDGELREAFVELLLEALLTSPVLRRLLQL-------  264

Query  253  GLHGPSAQSREQSLAMTLRDCTMFIKVAHSTPSM------CTRRLAYSIRF  297
                       Q LAMT +DC++ I+ + S+  +        R  AY ++ 
Sbjct  265  -----------QLLAMTAKDCSIMIRFSSSSVLLNVYLDSSGRTFAYEVKV  304



Lambda      K        H        a         alpha
   0.320    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00030729

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461826 pfam06090, Ins_P5_2-kin, Inositol-pentakisphosphate 2-...  167     4e-50


>CDD:461826 pfam06090, Ins_P5_2-kin, Inositol-pentakisphosphate 2-kinase. 
 This is a family of inositol-pentakisphosphate 2-kinases (EC 
2.7.1.158) (also known as inositol 1,3,4,5,6-pentakisphosphate 
2-kinase, Ins(1,3,4,5,6)P5 2-kinase) and InsP5 2-kinase). 
This enzyme phosphorylates Ins(1,3,4,5,6)P5 to form Ins(1,2,3,4,5,6)P6 
(also known as InsP6 or phytate). InsP6 is involved 
in many processes such as mRNA export, nonhomologous 
end-joining, endocytosis and ion channel regulation.
Length=319

 Score = 167 bits (426),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 135/367 (37%), Gaps = 125/367 (34%)

Query  17   YLAEGGANIIYRIASAPSPCHTGPTDTYSSSGPHFIVPPEFKGKLLRLRKETKTGISY--  74
            Y  EG ANI++         +TGP+            P   +GK+LRLRK          
Sbjct  1    YRGEGAANIVFS--------YTGPS------------PAALRGKVLRLRKAPPGWRDRKD  40

Query  75   --------QEIARNFDRTIRPLFSPDELVDQELVYLPSGLVQRCNEQLSAAERNGERPKK  126
                    +EI       +RPL     +V  ELV L    ++  N++L A     +RP  
Sbjct  41   LESSAEKEEEIVDFVRHVMRPLLGSKYVVPGELVRLDREFLEALNKKLQA-----QRPAA  95

Query  127  RQG-VYLSVTEPFGLLVTDMT-----TFATPNTVLAELKPKW-LLQSPSAPVNA------  173
            R+    +  T  + LL+ DMT     +  +  T+  E+KPKW  LQSPSAP++A      
Sbjct  96   RRRKADIDTTRDYALLLPDMTLLPGGSSKSSPTLCVEIKPKWGFLQSPSAPLSAETKEIK  155

Query  174  -RRCRTCALRDMKNYQSRRAGGSEEIS-FCPLNLVSDKFENVLRAAK------------Y  219
             R CR C  + +K       G  + IS +CPL+L S     V RA K            +
Sbjct  156  RRVCRFCMHQALKL----AEGKIKRISKYCPLDLFSGDEARVRRALKALLATPQNNLKVF  211

Query  220  VKGCEDQT---------------------------RLARILYRNPTLQKLLTHQKAMRDV  252
            + G                                 L   L  +P L++LL         
Sbjct  212  LNGSLVYPGDGGGSALTDAKAIQATDGELREAFVELLLEALLTSPVLRRLLQL-------  264

Query  253  GLHGPSAQSREQSLAMTLRDCTMFIKIPRDEMG------------PVEVRLGDLDLKTGA  300
                       Q LAMT +DC++ I+     +               EV++ DLD K   
Sbjct  265  -----------QLLAMTAKDCSIMIRFSSSSVLLNVYLDSSGRTFAYEVKVIDLDPKPLK  313

Query  301  GGKAQYW  307
              K + W
Sbjct  314  --KLEKW  318



Lambda      K        H        a         alpha
   0.318    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00030730

Length=311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461826 pfam06090, Ins_P5_2-kin, Inositol-pentakisphosphate 2-...  153     7e-45


>CDD:461826 pfam06090, Ins_P5_2-kin, Inositol-pentakisphosphate 2-kinase. 
 This is a family of inositol-pentakisphosphate 2-kinases (EC 
2.7.1.158) (also known as inositol 1,3,4,5,6-pentakisphosphate 
2-kinase, Ins(1,3,4,5,6)P5 2-kinase) and InsP5 2-kinase). 
This enzyme phosphorylates Ins(1,3,4,5,6)P5 to form Ins(1,2,3,4,5,6)P6 
(also known as InsP6 or phytate). InsP6 is involved 
in many processes such as mRNA export, nonhomologous 
end-joining, endocytosis and ion channel regulation.
Length=319

 Score = 153 bits (388),  Expect = 7e-45, Method: Composition-based stats.
 Identities = 89/351 (25%), Positives = 132/351 (38%), Gaps = 117/351 (33%)

Query  17   YLAEGGANIIYRIASAPSPCHTGPTDTYSSSGPHFIVPPEFKGKLLRLRKETKTGISY--  74
            Y  EG ANI++         +TGP+            P   +GK+LRLRK          
Sbjct  1    YRGEGAANIVFS--------YTGPS------------PAALRGKVLRLRKAPPGWRDRKD  40

Query  75   --------QEIARNFDRTIRPLFSPDELVDQELVYLPSGLVQRCNEQLSAAERNGERPKK  126
                    +EI       +RPL     +V  ELV L    ++  N++L A     +RP  
Sbjct  41   LESSAEKEEEIVDFVRHVMRPLLGSKYVVPGELVRLDREFLEALNKKLQA-----QRPAA  95

Query  127  RQG-VYLSVTEPFGLLVTDMT-----TFATPNTVLAELKPKW-LLQSPSAPVNA------  173
            R+    +  T  + LL+ DMT     +  +  T+  E+KPKW  LQSPSAP++A      
Sbjct  96   RRRKADIDTTRDYALLLPDMTLLPGGSSKSSPTLCVEIKPKWGFLQSPSAPLSAETKEIK  155

Query  174  -RRCRTCALRDMKNYQSRRAGGSEEIS-FCPLNLVSDKFENVLRAAK------------Y  219
             R CR C  + +K       G  + IS +CPL+L S     V RA K            +
Sbjct  156  RRVCRFCMHQALKL----AEGKIKRISKYCPLDLFSGDEARVRRALKALLATPQNNLKVF  211

Query  220  VKGCEDQT---------------------------RLARILYRNPTLQKLLTHQKAMRDV  252
            + G                                 L   L  +P L++LL         
Sbjct  212  LNGSLVYPGDGGGSALTDAKAIQATDGELREAFVELLLEALLTSPVLRRLLQL-------  264

Query  253  GLHGPSAQSREQSLAMTLRDCTMFIKVAHSTPSM------CTRRLAYSIRF  297
                       Q LAMT +DC++ I+ + S+  +        R  AY ++ 
Sbjct  265  -----------QLLAMTAKDCSIMIRFSSSSVLLNVYLDSSGRTFAYEVKV  304



Lambda      K        H        a         alpha
   0.320    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00030735

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00030737

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00030738

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00030736

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00030740

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00035169

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  131     7e-36


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 131 bits (331),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 16/268 (6%)

Query  1    MRRLLAHAFSDRALREQESLLHFYADLLVQKLHENLNHSHSEVVDIARWYNFTTFDLIGD  60
            +RR L   F+       E  +   A  LV+KL +        V+DI         ++I  
Sbjct  98   LRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKT--AGEPGVIDITDLLFRAALNVICS  155

Query  61   LAFGEPFQCLKD---SKYHWWVSIMLDAVKLSVYLKVLWFFPILSP-LTKLLVPRYLHQR  116
            + FGE F  L+D    +    V  +   +       +   FPIL          R L + 
Sbjct  156  ILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLD-LFPILKYFPGPHG--RKLKRA  212

Query  117  REASFQLTVEKVSRRLH----RQTNRPDFISYIL--RHKDDENRMSRQEIDANAATFVLA  170
            R+    L  + +  R       + +  DF+  +L  + ++D ++++ +E+ A       A
Sbjct  213  RKKIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFA  272

Query  171  GSETTAALLSGCTFYLLKNPHIYRRLVTEIRSRFQHPSEIRLSSIATLSYLNAVLEESLR  230
            G++TT++ LS   + L K+P +  +L  EI              +  + YL+AV++E+LR
Sbjct  273  GTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDDLQNMPYLDAVIKETLR  332

Query  231  IYPPIPAMLPRLVPEEGAMINGEYVPAG  258
            ++P +P +LPR V ++  +I G  +P G
Sbjct  333  LHPVVPLLLPREVTKD-TVIPGYLIPKG  359



Lambda      K        H        a         alpha
   0.325    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00035168

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  131     7e-36


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 131 bits (331),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 16/268 (6%)

Query  1    MRRLLAHAFSDRALREQESLLHFYADLLVQKLHENLNHSHSEVVDIARWYNFTTFDLIGD  60
            +RR L   F+       E  +   A  LV+KL +        V+DI         ++I  
Sbjct  98   LRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKT--AGEPGVIDITDLLFRAALNVICS  155

Query  61   LAFGEPFQCLKD---SKYHWWVSIMLDAVKLSVYLKVLWFFPILSP-LTKLLVPRYLHQR  116
            + FGE F  L+D    +    V  +   +       +   FPIL          R L + 
Sbjct  156  ILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLD-LFPILKYFPGPHG--RKLKRA  212

Query  117  REASFQLTVEKVSRRLH----RQTNRPDFISYIL--RHKDDENRMSRQEIDANAATFVLA  170
            R+    L  + +  R       + +  DF+  +L  + ++D ++++ +E+ A       A
Sbjct  213  RKKIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFA  272

Query  171  GSETTAALLSGCTFYLLKNPHIYRRLVTEIRSRFQHPSEIRLSSIATLSYLNAVLEESLR  230
            G++TT++ LS   + L K+P +  +L  EI              +  + YL+AV++E+LR
Sbjct  273  GTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDDLQNMPYLDAVIKETLR  332

Query  231  IYPPIPAMLPRLVPEEGAMINGEYVPAG  258
            ++P +P +LPR V ++  +I G  +P G
Sbjct  333  LHPVVPLLLPREVTKD-TVIPGYLIPKG  359



Lambda      K        H        a         alpha
   0.325    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00030739

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00035170

Length=401


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00035172

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  131     7e-36


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 131 bits (331),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 16/268 (6%)

Query  1    MRRLLAHAFSDRALREQESLLHFYADLLVQKLHENLNHSHSEVVDIARWYNFTTFDLIGD  60
            +RR L   F+       E  +   A  LV+KL +        V+DI         ++I  
Sbjct  98   LRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKT--AGEPGVIDITDLLFRAALNVICS  155

Query  61   LAFGEPFQCLKD---SKYHWWVSIMLDAVKLSVYLKVLWFFPILSP-LTKLLVPRYLHQR  116
            + FGE F  L+D    +    V  +   +       +   FPIL          R L + 
Sbjct  156  ILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLD-LFPILKYFPGPHG--RKLKRA  212

Query  117  REASFQLTVEKVSRRLH----RQTNRPDFISYIL--RHKDDENRMSRQEIDANAATFVLA  170
            R+    L  + +  R       + +  DF+  +L  + ++D ++++ +E+ A       A
Sbjct  213  RKKIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFA  272

Query  171  GSETTAALLSGCTFYLLKNPHIYRRLVTEIRSRFQHPSEIRLSSIATLSYLNAVLEESLR  230
            G++TT++ LS   + L K+P +  +L  EI              +  + YL+AV++E+LR
Sbjct  273  GTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDDLQNMPYLDAVIKETLR  332

Query  231  IYPPIPAMLPRLVPEEGAMINGEYVPAG  258
            ++P +P +LPR V ++  +I G  +P G
Sbjct  333  LHPVVPLLLPREVTKD-TVIPGYLIPKG  359



Lambda      K        H        a         alpha
   0.325    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00035171

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  131     7e-36


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 131 bits (331),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 16/268 (6%)

Query  1    MRRLLAHAFSDRALREQESLLHFYADLLVQKLHENLNHSHSEVVDIARWYNFTTFDLIGD  60
            +RR L   F+       E  +   A  LV+KL +        V+DI         ++I  
Sbjct  98   LRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKT--AGEPGVIDITDLLFRAALNVICS  155

Query  61   LAFGEPFQCLKD---SKYHWWVSIMLDAVKLSVYLKVLWFFPILSP-LTKLLVPRYLHQR  116
            + FGE F  L+D    +    V  +   +       +   FPIL          R L + 
Sbjct  156  ILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLD-LFPILKYFPGPHG--RKLKRA  212

Query  117  REASFQLTVEKVSRRLH----RQTNRPDFISYIL--RHKDDENRMSRQEIDANAATFVLA  170
            R+    L  + +  R       + +  DF+  +L  + ++D ++++ +E+ A       A
Sbjct  213  RKKIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFA  272

Query  171  GSETTAALLSGCTFYLLKNPHIYRRLVTEIRSRFQHPSEIRLSSIATLSYLNAVLEESLR  230
            G++TT++ LS   + L K+P +  +L  EI              +  + YL+AV++E+LR
Sbjct  273  GTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDDLQNMPYLDAVIKETLR  332

Query  231  IYPPIPAMLPRLVPEEGAMINGEYVPAG  258
            ++P +P +LPR V ++  +I G  +P G
Sbjct  333  LHPVVPLLLPREVTKD-TVIPGYLIPKG  359



Lambda      K        H        a         alpha
   0.325    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0724    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00030744

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  131     7e-36


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 131 bits (331),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 16/268 (6%)

Query  1    MRRLLAHAFSDRALREQESLLHFYADLLVQKLHENLNHSHSEVVDIARWYNFTTFDLIGD  60
            +RR L   F+       E  +   A  LV+KL +        V+DI         ++I  
Sbjct  98   LRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKT--AGEPGVIDITDLLFRAALNVICS  155

Query  61   LAFGEPFQCLKD---SKYHWWVSIMLDAVKLSVYLKVLWFFPILSP-LTKLLVPRYLHQR  116
            + FGE F  L+D    +    V  +   +       +   FPIL          R L + 
Sbjct  156  ILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLD-LFPILKYFPGPHG--RKLKRA  212

Query  117  REASFQLTVEKVSRRLH----RQTNRPDFISYIL--RHKDDENRMSRQEIDANAATFVLA  170
            R+    L  + +  R       + +  DF+  +L  + ++D ++++ +E+ A       A
Sbjct  213  RKKIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFA  272

Query  171  GSETTAALLSGCTFYLLKNPHIYRRLVTEIRSRFQHPSEIRLSSIATLSYLNAVLEESLR  230
            G++TT++ LS   + L K+P +  +L  EI              +  + YL+AV++E+LR
Sbjct  273  GTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDDLQNMPYLDAVIKETLR  332

Query  231  IYPPIPAMLPRLVPEEGAMINGEYVPAG  258
            ++P +P +LPR V ++  +I G  +P G
Sbjct  333  LHPVVPLLLPREVTKD-TVIPGYLIPKG  359



Lambda      K        H        a         alpha
   0.325    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00035173

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00035174

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00030741

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00035175

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  131     7e-36


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 131 bits (331),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 16/268 (6%)

Query  1    MRRLLAHAFSDRALREQESLLHFYADLLVQKLHENLNHSHSEVVDIARWYNFTTFDLIGD  60
            +RR L   F+       E  +   A  LV+KL +        V+DI         ++I  
Sbjct  98   LRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKT--AGEPGVIDITDLLFRAALNVICS  155

Query  61   LAFGEPFQCLKD---SKYHWWVSIMLDAVKLSVYLKVLWFFPILSP-LTKLLVPRYLHQR  116
            + FGE F  L+D    +    V  +   +       +   FPIL          R L + 
Sbjct  156  ILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLD-LFPILKYFPGPHG--RKLKRA  212

Query  117  REASFQLTVEKVSRRLH----RQTNRPDFISYIL--RHKDDENRMSRQEIDANAATFVLA  170
            R+    L  + +  R       + +  DF+  +L  + ++D ++++ +E+ A       A
Sbjct  213  RKKIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFA  272

Query  171  GSETTAALLSGCTFYLLKNPHIYRRLVTEIRSRFQHPSEIRLSSIATLSYLNAVLEESLR  230
            G++TT++ LS   + L K+P +  +L  EI              +  + YL+AV++E+LR
Sbjct  273  GTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDDLQNMPYLDAVIKETLR  332

Query  231  IYPPIPAMLPRLVPEEGAMINGEYVPAG  258
            ++P +P +LPR V ++  +I G  +P G
Sbjct  333  LHPVVPLLLPREVTKD-TVIPGYLIPKG  359



Lambda      K        H        a         alpha
   0.325    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00030742

Length=401


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00030743

Length=401


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00035176

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  131     7e-36


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 131 bits (331),  Expect = 7e-36, Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 16/268 (6%)

Query  1    MRRLLAHAFSDRALREQESLLHFYADLLVQKLHENLNHSHSEVVDIARWYNFTTFDLIGD  60
            +RR L   F+       E  +   A  LV+KL +        V+DI         ++I  
Sbjct  98   LRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKT--AGEPGVIDITDLLFRAALNVICS  155

Query  61   LAFGEPFQCLKD---SKYHWWVSIMLDAVKLSVYLKVLWFFPILSP-LTKLLVPRYLHQR  116
            + FGE F  L+D    +    V  +   +       +   FPIL          R L + 
Sbjct  156  ILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLD-LFPILKYFPGPHG--RKLKRA  212

Query  117  REASFQLTVEKVSRRLH----RQTNRPDFISYIL--RHKDDENRMSRQEIDANAATFVLA  170
            R+    L  + +  R       + +  DF+  +L  + ++D ++++ +E+ A       A
Sbjct  213  RKKIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFA  272

Query  171  GSETTAALLSGCTFYLLKNPHIYRRLVTEIRSRFQHPSEIRLSSIATLSYLNAVLEESLR  230
            G++TT++ LS   + L K+P +  +L  EI              +  + YL+AV++E+LR
Sbjct  273  GTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDDLQNMPYLDAVIKETLR  332

Query  231  IYPPIPAMLPRLVPEEGAMINGEYVPAG  258
            ++P +P +LPR V ++  +I G  +P G
Sbjct  333  LHPVVPLLLPREVTKD-TVIPGYLIPKG  359



Lambda      K        H        a         alpha
   0.325    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00030748

Length=366


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00030752

Length=328


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00035177

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00030749

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461442 pfam04818, CTD_bind, RNA polymerase II-binding domain....  153     4e-46


>CDD:461442 pfam04818, CTD_bind, RNA polymerase II-binding domain.  This 
domain binds to the phosphorylated C-terminal domain (CTD) of 
RNA polymerase II.
Length=117

 Score = 153 bits (388),  Expect = 4e-46, Method: Composition-based stats.
 Identities = 45/113 (40%), Positives = 80/113 (71%), Gaps = 0/113 (0%)

Query  6    DAVKAKLSALNETQEGIVTVAQWVMFHRRHAERTAQLWLQKLRDSPAPKRLNLIYLANGI  65
            +A++ KLS+LN +QE I T+++W++FHR+HA+   ++W + L+ +   K+L+L+YLAN +
Sbjct  1    EALEKKLSSLNNSQESIQTLSKWILFHRKHAKAIVEVWEKYLKKAKPEKKLHLLYLANDV  60

Query  66   AQQSKARRKDDFLIAFSPVIAEAMATAYKGASNDIQQKLRRVVEVWRQRSIFE  118
             Q S+ + K +F  AF PV+ EA A+AYK     +++KL R++ +W +R++F 
Sbjct  61   LQNSRKKGKSEFADAFEPVLPEAFASAYKKCDEKLKKKLERLLNIWEERNVFS  113



Lambda      K        H        a         alpha
   0.310    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 507942834


Query= TCONS_00035178

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461442 pfam04818, CTD_bind, RNA polymerase II-binding domain....  155     4e-47


>CDD:461442 pfam04818, CTD_bind, RNA polymerase II-binding domain.  This 
domain binds to the phosphorylated C-terminal domain (CTD) of 
RNA polymerase II.
Length=117

 Score = 155 bits (394),  Expect = 4e-47, Method: Composition-based stats.
 Identities = 45/113 (40%), Positives = 81/113 (72%), Gaps = 0/113 (0%)

Query  6    DAVKAKLSALNETQEGIVTVAQWVMFHRRHAERTAQLWLQKLRDSPAPKRLNLIYLANEV  65
            +A++ KLS+LN +QE I T+++W++FHR+HA+   ++W + L+ +   K+L+L+YLAN+V
Sbjct  1    EALEKKLSSLNNSQESIQTLSKWILFHRKHAKAIVEVWEKYLKKAKPEKKLHLLYLANDV  60

Query  66   AQQSKARRKDDFLIAFSPIIAEAMATAYKGASNDIQQKLRRVVEVWRQRSIFE  118
             Q S+ + K +F  AF P++ EA A+AYK     +++KL R++ +W +R++F 
Sbjct  61   LQNSRKKGKSEFADAFEPVLPEAFASAYKKCDEKLKKKLERLLNIWEERNVFS  113



Lambda      K        H        a         alpha
   0.310    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 507942834


Query= TCONS_00030751

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00035179

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461442 pfam04818, CTD_bind, RNA polymerase II-binding domain....  151     9e-46


>CDD:461442 pfam04818, CTD_bind, RNA polymerase II-binding domain.  This 
domain binds to the phosphorylated C-terminal domain (CTD) of 
RNA polymerase II.
Length=117

 Score = 151 bits (385),  Expect = 9e-46, Method: Composition-based stats.
 Identities = 44/113 (39%), Positives = 80/113 (71%), Gaps = 0/113 (0%)

Query  6    DAVKAKLSALNETQEGIVTVAQWVMFHRRHAERTAQLWLQKLRDSPAPKRLNLIYLANGI  65
            +A++ KLS+LN +QE I T+++W++FHR+HA+   ++W + L+ +   K+L+L+YLAN +
Sbjct  1    EALEKKLSSLNNSQESIQTLSKWILFHRKHAKAIVEVWEKYLKKAKPEKKLHLLYLANDV  60

Query  66   AQQSKARRKDDFLIAFSPIIAEAMATAYKGASNDIQQKLRRVVEVWRQRSIFE  118
             Q S+ + K +F  AF P++ EA A+AYK     +++KL R++ +W +R++F 
Sbjct  61   LQNSRKKGKSEFADAFEPVLPEAFASAYKKCDEKLKKKLERLLNIWEERNVFS  113



Lambda      K        H        a         alpha
   0.310    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 507942834


Query= TCONS_00030750

Length=328


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00035180

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.125    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00030753

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463900 pfam13499, EF-hand_7, EF-hand domain pair                  68.4    6e-17


>CDD:463900 pfam13499, EF-hand_7, EF-hand domain pair.  
Length=67

 Score = 68.4 bits (168),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 28/67 (42%), Positives = 47/67 (70%), Gaps = 2/67 (3%)

Query  83   EEEIREAFKVFDRDNNGFISAAELRHVMTSI--GEKLTDDEVDEMIREADQDGDGRIDYN  140
            EE+++EAFK+ D D +G++   EL+ ++  +  GE L+D+EV+E+ +E D D DGRI + 
Sbjct  1    EEKLKEAFKLLDSDGDGYLDVEELKKLLRKLEEGEPLSDEEVEELFKEFDLDKDGRISFE  60

Query  141  EFVQLMM  147
            EF++L  
Sbjct  61   EFLELYS  67


 Score = 55.0 bits (133),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query  11  SEYKEAFSLFDKDGDGQITTKELGTVMRSL--GQNPSESELQDMINEVDADNNGTIDFPE  68
            + KEAF L D DGDG +  +EL  ++R L  G+  S+ E++++  E D D +G I F E
Sbjct  2   EKLKEAFKLLDSDGDGYLDVEELKKLLRKLEEGEPLSDEEVEELFKEFDLDKDGRISFEE  61

Query  69  FLTMM  73
           FL + 
Sbjct  62  FLELY  66



Lambda      K        H        a         alpha
   0.312    0.131    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00030754

Length=143
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463900 pfam13499, EF-hand_7, EF-hand domain pair                  65.0    1e-15


>CDD:463900 pfam13499, EF-hand_7, EF-hand domain pair.  
Length=67

 Score = 65.0 bits (159),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 27/63 (43%), Positives = 45/63 (71%), Gaps = 2/63 (3%)

Query  83   EEEIREAFKVFDRDNNGFISAAELRHVMTSI--GEKLTDDEVDEMIREADQDGDGRIDYN  140
            EE+++EAFK+ D D +G++   EL+ ++  +  GE L+D+EV+E+ +E D D DGRI + 
Sbjct  1    EEKLKEAFKLLDSDGDGYLDVEELKKLLRKLEEGEPLSDEEVEELFKEFDLDKDGRISFE  60

Query  141  EFV  143
            EF+
Sbjct  61   EFL  63


 Score = 54.6 bits (132),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query  11  SEYKEAFSLFDKDGDGQITTKELGTVMRSL--GQNPSESELQDMINEVDADNNGTIDFPE  68
            + KEAF L D DGDG +  +EL  ++R L  G+  S+ E++++  E D D +G I F E
Sbjct  2   EKLKEAFKLLDSDGDGYLDVEELKKLLRKLEEGEPLSDEEVEELFKEFDLDKDGRISFEE  61

Query  69  FLTMM  73
           FL + 
Sbjct  62  FLELY  66



Lambda      K        H        a         alpha
   0.311    0.131    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00035181

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463900 pfam13499, EF-hand_7, EF-hand domain pair                  60.3    7e-14


>CDD:463900 pfam13499, EF-hand_7, EF-hand domain pair.  
Length=67

 Score = 60.3 bits (147),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 27/62 (44%), Positives = 43/62 (69%), Gaps = 2/62 (3%)

Query  83   EEEIREAFKVFDRDNNGFISAAELRHVMTSI--GEKLTDDEVDEMIREADQDGDGRIDCT  140
            EE+++EAFK+ D D +G++   EL+ ++  +  GE L+D+EV+E+ +E D D DGRI   
Sbjct  1    EEKLKEAFKLLDSDGDGYLDVEELKKLLRKLEEGEPLSDEEVEELFKEFDLDKDGRISFE  60

Query  141  EF  142
            EF
Sbjct  61   EF  62


 Score = 55.0 bits (133),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query  11  SEYKEAFSLFDKDGDGQITTKELGTVMRSL--GQNPSESELQDMINEVDADNNGTIDFPE  68
            + KEAF L D DGDG +  +EL  ++R L  G+  S+ E++++  E D D +G I F E
Sbjct  2   EKLKEAFKLLDSDGDGYLDVEELKKLLRKLEEGEPLSDEEVEELFKEFDLDKDGRISFEE  61

Query  69  FLTMM  73
           FL + 
Sbjct  62  FLELY  66



Lambda      K        H        a         alpha
   0.311    0.131    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00030755

Length=173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463900 pfam13499, EF-hand_7, EF-hand domain pair                  61.1    9e-14


>CDD:463900 pfam13499, EF-hand_7, EF-hand domain pair.  
Length=67

 Score = 61.1 bits (149),  Expect = 9e-14, Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 41/58 (71%), Gaps = 2/58 (3%)

Query  83   EEEIREAFKVFDRDNNGFISAAELRHVMTSI--GEKLTDDEVDEMIREADQDGDGRID  138
            EE+++EAFK+ D D +G++   EL+ ++  +  GE L+D+EV+E+ +E D D DGRI 
Sbjct  1    EEKLKEAFKLLDSDGDGYLDVEELKKLLRKLEEGEPLSDEEVEELFKEFDLDKDGRIS  58


 Score = 58.0 bits (141),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query  11  SEYKEAFSLFDKDGDGQITTKELGTVMRSL--GQNPSESELQDMINEVDADNNGTIDFPE  68
            + KEAF L D DGDG +  +EL  ++R L  G+  S+ E++++  E D D +G I F E
Sbjct  2   EKLKEAFKLLDSDGDGYLDVEELKKLLRKLEEGEPLSDEEVEELFKEFDLDKDGRISFEE  61

Query  69  FLTMM  73
           FL + 
Sbjct  62  FLELY  66



Lambda      K        H        a         alpha
   0.313    0.130    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00030756

Length=144
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463900 pfam13499, EF-hand_7, EF-hand domain pair                  61.5    3e-14


>CDD:463900 pfam13499, EF-hand_7, EF-hand domain pair.  
Length=67

 Score = 61.5 bits (150),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query  83   EEEIREAFKVFDRDNNGFISAAELRHVMTSI--GEKLTDDEVDEMIREADQDGDGRIDCN  140
            EE+++EAFK+ D D +G++   EL+ ++  +  GE L+D+EV+E+ +E D D DGRI   
Sbjct  1    EEKLKEAFKLLDSDGDGYLDVEELKKLLRKLEEGEPLSDEEVEELFKEFDLDKDGRISFE  60

Query  141  EFVQ  144
            EF++
Sbjct  61   EFLE  64


 Score = 55.0 bits (133),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query  11  SEYKEAFSLFDKDGDGQITTKELGTVMRSL--GQNPSESELQDMINEVDADNNGTIDFPE  68
            + KEAF L D DGDG +  +EL  ++R L  G+  S+ E++++  E D D +G I F E
Sbjct  2   EKLKEAFKLLDSDGDGYLDVEELKKLLRKLEEGEPLSDEEVEELFKEFDLDKDGRISFEE  61

Query  69  FLTMM  73
           FL + 
Sbjct  62  FLELY  66



Lambda      K        H        a         alpha
   0.311    0.131    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00035182

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463900 pfam13499, EF-hand_7, EF-hand domain pair                  70.0    9e-18


>CDD:463900 pfam13499, EF-hand_7, EF-hand domain pair.  
Length=67

 Score = 70.0 bits (172),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 28/67 (42%), Positives = 47/67 (70%), Gaps = 2/67 (3%)

Query  59   EEEIREAFKVFDRDNNGFISAAELRHVMTSI--GEKLTDDEVDEMIREADQDGDGRIDYN  116
            EE+++EAFK+ D D +G++   EL+ ++  +  GE L+D+EV+E+ +E D D DGRI + 
Sbjct  1    EEKLKEAFKLLDSDGDGYLDVEELKKLLRKLEEGEPLSDEEVEELFKEFDLDKDGRISFE  60

Query  117  EFVQLMM  123
            EF++L  
Sbjct  61   EFLELYS  67



Lambda      K        H        a         alpha
   0.314    0.132    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00030757

Length=69
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463900 pfam13499, EF-hand_7, EF-hand domain pair                  50.7    5e-11


>CDD:463900 pfam13499, EF-hand_7, EF-hand domain pair.  
Length=67

 Score = 50.7 bits (122),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 23/58 (40%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query  11  SEYKEAFSLFDKDGDGQITTKELGTVMRSL--GQNPSESELQDMINEVDADNNGTIDF  66
            + KEAF L D DGDG +  +EL  ++R L  G+  S+ E++++  E D D +G I F
Sbjct  2   EKLKEAFKLLDSDGDGYLDVEELKKLLRKLEEGEPLSDEEVEELFKEFDLDKDGRISF  59



Lambda      K        H        a         alpha
   0.306    0.128    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00030759

Length=641
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460241 pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 4...  663     0.0  


>CDD:460241 pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 47.  Members 
of this family are alpha-mannosidases that catalyze the 
hydrolysis of the terminal 1,2-linked alpha-D-mannose residues 
in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2).
Length=453

 Score = 663 bits (1713),  Expect = 0.0, Method: Composition-based stats.
 Identities = 216/482 (45%), Positives = 290/482 (60%), Gaps = 40/482 (8%)

Query  110  AFTHAWKGYKQHAWMRDELSPLSARYRTTFAGWAATLVDALDTLVIMGMENEFKDALHAI  169
            AF HAW GYK++AW  DEL P+S     TF GW AT+VD+LDTL+IMG+ +EF++A+  +
Sbjct  1    AFLHAWDGYKKYAWGHDELRPISGGGNDTFGGWGATIVDSLDTLIIMGLTDEFEEAVDWV  60

Query  170  E-SIDFTTPDATQINIFETTIRYVGGLLGAYDLTDGKHPILLKKAVELADMIYDAFDTTN  228
            E ++DF   D+T++++FETTIRY+GGLL AYDL+     +LL+KAV+LAD +  AFDT  
Sbjct  61   EKTLDFDK-DSTEVSVFETTIRYLGGLLSAYDLSGDGDDVLLEKAVDLADRLLPAFDTPT  119

Query  229  RMPQSRWQWSRSARGLSIQPSRQTILAELGSLNLEFTRLSQLTHDPKYFDAVQRITNVLD  288
             +P  R        G        + LAE G+L LEFTRLSQLT DPKY D  Q+I +VL 
Sbjct  120  GIPYPRVNLKTGKGGNGHVAGGASSLAEAGTLQLEFTRLSQLTGDPKYEDLAQKIMDVLW  179

Query  289  DAQNKTKIPGLWPMMVNAEDLEFTDPRFTVGGMADSTYEYLPKEHMLLGARTDQYRKMYA  348
              Q++T +PGL P+ ++ +  +F      +G   DS YEYL K+++L G    +YR MY 
Sbjct  180  KNQSRTPLPGLVPIYIDPDTGKFVGSNIGLGARGDSYYEYLLKQYLLTGGTDPEYRDMYE  239

Query  349  AAMEAIKKRLLFRPMTKNGEDLLFAGNTHTGLASNAPPEPQWEHLKCFFGGTVGIGAKIF  408
             AM+AIKK LLFRP T +  DLLF G   +G        P+ +HL CF GG + +GA + 
Sbjct  240  EAMDAIKKHLLFRPSTPS--DLLFIGELDSGG--GGKLSPKMDHLSCFAGGMLALGATLG  295

Query  409  N-RPEELSIARKLTDGCIWAYDVMPTGIMPESMHLSPCQSMDHCEWDEQKWYQDVRRRLA  467
              R  +L +A KLT+GC   YD  PTG+ PE  +  PC   + C WDE KW   V+    
Sbjct  296  LPREGDLELAEKLTEGCYKTYDSTPTGLGPEIFYFDPCD--EDCPWDEDKWDFYVK----  349

Query  468  KGSKEKDTVQEAKTIIRDSGLQPGLTEITDPRYLLRPEAIESVFIMYRITGDKKLQDDAW  527
                                       I DP YLLRPE IES+F +YR TGD K ++  W
Sbjct  350  ---------------------------IEDPHYLLRPETIESLFYLYRATGDPKYREWGW  382

Query  528  RMFQSIEKATRTKYAHAAIDDVRDVKATQLDYMESFWLAETLKYFYLIFSEPGLVSLDDY  587
             +FQ+IEK TRT+  ++ + DV      + D MESFWLAETLKY YL+FS+  L+SLD++
Sbjct  383  EIFQAIEKYTRTECGYSGLQDVTSPPGEKEDNMESFWLAETLKYLYLLFSDDDLLSLDEW  442

Query  588  VL  589
            V 
Sbjct  443  VF  444



Lambda      K        H        a         alpha
   0.321    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 808184920


Query= TCONS_00030758

Length=503
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460241 pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 4...  502     1e-176


>CDD:460241 pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 47.  Members 
of this family are alpha-mannosidases that catalyze the 
hydrolysis of the terminal 1,2-linked alpha-D-mannose residues 
in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2).
Length=453

 Score = 502 bits (1295),  Expect = 1e-176, Method: Composition-based stats.
 Identities = 171/396 (43%), Positives = 229/396 (58%), Gaps = 40/396 (10%)

Query  110  AFTHAWKGYKQHAWMRDELSPLSARYRTTFAGWAATLVDALDTLVIMGMENEFKDALHAI  169
            AF HAW GYK++AW  DEL P+S     TF GW AT+VD+LDTL+IMG+ +EF++A+  +
Sbjct  1    AFLHAWDGYKKYAWGHDELRPISGGGNDTFGGWGATIVDSLDTLIIMGLTDEFEEAVDWV  60

Query  170  E-SIDFTTPDATQINIFETTIRYVGGLLGAYDLTDGKHPILLKKAVELADMIYDAFDTTN  228
            E ++DF   D+T++++FETTIRY+GGLL AYDL+     +LL+KAV+LAD +  AFDT  
Sbjct  61   EKTLDFDK-DSTEVSVFETTIRYLGGLLSAYDLSGDGDDVLLEKAVDLADRLLPAFDTPT  119

Query  229  RMPQSRWQWSRSARGLSIQPSRQTILAELGSLNLEFTRLSQLTHDPKYFDAVQRITNVLD  288
             +P  R        G        + LAE G+L LEFTRLSQLT DPKY D  Q+I +VL 
Sbjct  120  GIPYPRVNLKTGKGGNGHVAGGASSLAEAGTLQLEFTRLSQLTGDPKYEDLAQKIMDVLW  179

Query  289  DAQNKTKIPGLWPMMVNAEDLEFTDPRFTVGGMADSTYEYLPKEHMLLGARTDQYRKMYA  348
              Q++T +PGL P+ ++ +  +F      +G   DS YEYL K+++L G    +YR MY 
Sbjct  180  KNQSRTPLPGLVPIYIDPDTGKFVGSNIGLGARGDSYYEYLLKQYLLTGGTDPEYRDMYE  239

Query  349  AAMEAIKKRLLFRPMTKNGEDLLFAGNTHTGLASNAPPEPQWEHLKCFFGGTVGIGAKIF  408
             AM+AIKK LLFRP T +  DLLF G   +G        P+ +HL CF GG + +GA + 
Sbjct  240  EAMDAIKKHLLFRPSTPS--DLLFIGELDSGG--GGKLSPKMDHLSCFAGGMLALGATLG  295

Query  409  N-RPEELSIARKLTDGCIWAYDVMPTGIMPESMHLSPCQSMDHCEWDEQKWYQDVRRRLA  467
              R  +L +A KLT+GC   YD  PTG+ PE  +  PC   + C WDE KW   V+    
Sbjct  296  LPREGDLELAEKLTEGCYKTYDSTPTGLGPEIFYFDPCD--EDCPWDEDKWDFYVK----  349

Query  468  KGSKEKDTVQEAKTIIRDSGLQPGLTEITDPRYLLR  503
                                       I DP YLLR
Sbjct  350  ---------------------------IEDPHYLLR  358



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 623795192


Query= TCONS_00030761

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460241 pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 4...  688     0.0  


>CDD:460241 pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 47.  Members 
of this family are alpha-mannosidases that catalyze the 
hydrolysis of the terminal 1,2-linked alpha-D-mannose residues 
in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2).
Length=453

 Score = 688 bits (1778),  Expect = 0.0, Method: Composition-based stats.
 Identities = 222/491 (45%), Positives = 296/491 (60%), Gaps = 40/491 (8%)

Query  110  AFTHAWKGYKQHAWMRDELSPLSARYRTTFAGWAATLVDALDTLVIMGMENEFKDALHAI  169
            AF HAW GYK++AW  DEL P+S     TF GW AT+VD+LDTL+IMG+ +EF++A+  +
Sbjct  1    AFLHAWDGYKKYAWGHDELRPISGGGNDTFGGWGATIVDSLDTLIIMGLTDEFEEAVDWV  60

Query  170  E-SIDFTTPDATQINIFETTIRYVGGLLGAYDLTDGKHPILLKKAVELADMIYDAFDTTN  228
            E ++DF   D+T++++FETTIRY+GGLL AYDL+     +LL+KAV+LAD +  AFDT  
Sbjct  61   EKTLDFDK-DSTEVSVFETTIRYLGGLLSAYDLSGDGDDVLLEKAVDLADRLLPAFDTPT  119

Query  229  RMPQSRWQWSRSARGLSIQPSRQTILAELGSLNLEFTRLSQLTHDPKYFDAVQRITNVLD  288
             +P  R        G        + LAE G+L LEFTRLSQLT DPKY D  Q+I +VL 
Sbjct  120  GIPYPRVNLKTGKGGNGHVAGGASSLAEAGTLQLEFTRLSQLTGDPKYEDLAQKIMDVLW  179

Query  289  DAQNKTKIPGLWPMMVNAEDLEFTDPRFTVGGMADSTYEYLPKEHMLLGARTDQYRKMYA  348
              Q++T +PGL P+ ++ +  +F      +G   DS YEYL K+++L G    +YR MY 
Sbjct  180  KNQSRTPLPGLVPIYIDPDTGKFVGSNIGLGARGDSYYEYLLKQYLLTGGTDPEYRDMYE  239

Query  349  AAMEAIKKRLLFRPMTKNGEDLLFAGNTHTGLASNAPPEPQWEHLKCFFGGTVGIGAKIF  408
             AM+AIKK LLFRP T +  DLLF G   +G        P+ +HL CF GG + +GA + 
Sbjct  240  EAMDAIKKHLLFRPSTPS--DLLFIGELDSGG--GGKLSPKMDHLSCFAGGMLALGATLG  295

Query  409  N-RPEELSIARKLTDGCIWAYDVMPTGIMPESMHLSPCQSMDHCEWDEQKWYQDVRRRLA  467
              R  +L +A KLT+GC   YD  PTG+ PE  +  PC   + C WDE KW   V+    
Sbjct  296  LPREGDLELAEKLTEGCYKTYDSTPTGLGPEIFYFDPCD--EDCPWDEDKWDFYVK----  349

Query  468  KGSKEKDTVQEAKTIIRDSGLQPGLTEITDPRYLLRPEAIESVFIMYRITGDKKLQDDAW  527
                                       I DP YLLRPE IES+F +YR TGD K ++  W
Sbjct  350  ---------------------------IEDPHYLLRPETIESLFYLYRATGDPKYREWGW  382

Query  528  RMFQSIEKATRTKYAHAAIDDVRDVKATQLDYMESFWLAETLKYFYLIFSEPGLVSLDDY  587
             +FQ+IEK TRT+  ++ + DV      + D MESFWLAETLKY YL+FS+  L+SLD++
Sbjct  383  EIFQAIEKYTRTECGYSGLQDVTSPPGEKEDNMESFWLAETLKYLYLLFSDDDLLSLDEW  442

Query  588  VLNTEAHPFKR  598
            V NTEAHP   
Sbjct  443  VFNTEAHPLPV  453



Lambda      K        H        a         alpha
   0.320    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 763652708


Query= TCONS_00030760

Length=641
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460241 pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 4...  663     0.0  


>CDD:460241 pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 47.  Members 
of this family are alpha-mannosidases that catalyze the 
hydrolysis of the terminal 1,2-linked alpha-D-mannose residues 
in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2).
Length=453

 Score = 663 bits (1713),  Expect = 0.0, Method: Composition-based stats.
 Identities = 216/482 (45%), Positives = 290/482 (60%), Gaps = 40/482 (8%)

Query  110  AFTHAWKGYKQHAWMRDELSPLSARYRTTFAGWAATLVDALDTLVIMGMENEFKDALHAI  169
            AF HAW GYK++AW  DEL P+S     TF GW AT+VD+LDTL+IMG+ +EF++A+  +
Sbjct  1    AFLHAWDGYKKYAWGHDELRPISGGGNDTFGGWGATIVDSLDTLIIMGLTDEFEEAVDWV  60

Query  170  E-SIDFTTPDATQINIFETTIRYVGGLLGAYDLTDGKHPILLKKAVELADMIYDAFDTTN  228
            E ++DF   D+T++++FETTIRY+GGLL AYDL+     +LL+KAV+LAD +  AFDT  
Sbjct  61   EKTLDFDK-DSTEVSVFETTIRYLGGLLSAYDLSGDGDDVLLEKAVDLADRLLPAFDTPT  119

Query  229  RMPQSRWQWSRSARGLSIQPSRQTILAELGSLNLEFTRLSQLTHDPKYFDAVQRITNVLD  288
             +P  R        G        + LAE G+L LEFTRLSQLT DPKY D  Q+I +VL 
Sbjct  120  GIPYPRVNLKTGKGGNGHVAGGASSLAEAGTLQLEFTRLSQLTGDPKYEDLAQKIMDVLW  179

Query  289  DAQNKTKIPGLWPMMVNAEDLEFTDPRFTVGGMADSTYEYLPKEHMLLGARTDQYRKMYA  348
              Q++T +PGL P+ ++ +  +F      +G   DS YEYL K+++L G    +YR MY 
Sbjct  180  KNQSRTPLPGLVPIYIDPDTGKFVGSNIGLGARGDSYYEYLLKQYLLTGGTDPEYRDMYE  239

Query  349  AAMEAIKKRLLFRPMTKNGEDLLFAGNTHTGLASNAPPEPQWEHLKCFFGGTVGIGAKIF  408
             AM+AIKK LLFRP T +  DLLF G   +G        P+ +HL CF GG + +GA + 
Sbjct  240  EAMDAIKKHLLFRPSTPS--DLLFIGELDSGG--GGKLSPKMDHLSCFAGGMLALGATLG  295

Query  409  N-RPEELSIARKLTDGCIWAYDVMPTGIMPESMHLSPCQSMDHCEWDEQKWYQDVRRRLA  467
              R  +L +A KLT+GC   YD  PTG+ PE  +  PC   + C WDE KW   V+    
Sbjct  296  LPREGDLELAEKLTEGCYKTYDSTPTGLGPEIFYFDPCD--EDCPWDEDKWDFYVK----  349

Query  468  KGSKEKDTVQEAKTIIRDSGLQPGLTEITDPRYLLRPEAIESVFIMYRITGDKKLQDDAW  527
                                       I DP YLLRPE IES+F +YR TGD K ++  W
Sbjct  350  ---------------------------IEDPHYLLRPETIESLFYLYRATGDPKYREWGW  382

Query  528  RMFQSIEKATRTKYAHAAIDDVRDVKATQLDYMESFWLAETLKYFYLIFSEPGLVSLDDY  587
             +FQ+IEK TRT+  ++ + DV      + D MESFWLAETLKY YL+FS+  L+SLD++
Sbjct  383  EIFQAIEKYTRTECGYSGLQDVTSPPGEKEDNMESFWLAETLKYLYLLFSDDDLLSLDEW  442

Query  588  VL  589
            V 
Sbjct  443  VF  444



Lambda      K        H        a         alpha
   0.321    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 808184920


Query= TCONS_00030762

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00030763

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              98.9    1e-23
CDD:366028 pfam00324, AA_permease, Amino acid permease                70.4    7e-14


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 98.9 bits (247),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 64/308 (21%), Positives = 130/308 (42%), Gaps = 31/308 (10%)

Query  6    ILIIHVVGLFAIIIPLWVLAPR-NSAKAVFTEFNNAGGWDSDGTATLVGLSTTITAMIGY  64
            IL + +  +  II+ L        +  +         GW         G    + +  G+
Sbjct  149  ILKLLLPLILIIILGLVTADGGGFNLLSGEWHTFFPDGWPG----VFAGFLGVLWSFTGF  204

Query  65   DCSVHMSEEIKDAAETLPKAMMSAVAVNGVLGFVMVVTLCFTLGDVDSILSTPTGFPFIQ  124
            + + ++SEE+K     +PKA+   V + GVL  ++ +     + D D I  +        
Sbjct  205  ESAANVSEEVKKR--NVPKAIFIGVIIVGVLYILVNIAFFGVVPD-DEIALSSGLGQVAA  261

Query  125  IFYNTTNSYAATNTMTAVLVITLTASTITEVATASRQLWSFARDRGLPFSSFFAYVSLTP  184
            + +           +  +L ++L  +  T +  ASR L++ ARD  LPFS FFA V+   
Sbjct  262  LLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVN---  318

Query  185  PVSGGVTDRPMQVTPGWNIPLNSVMVSLAVTILLSLINIGSQVALAAIVSLTITSLISAY  244
                            +  P+ +++++  ++++L L+ + S  A  A++SL+    + +Y
Sbjct  319  ---------------KFGSPIRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSY  363

Query  245  ILSIGCVLLKRIRGEPLPPRRWTLGRFGMAVNIAALAFLIPIFVFSFFPLTKTVDTKTMN  304
            +L I  +L+ R +   L             V I  + F + + V  FFP        ++N
Sbjct  364  LLPIIGLLILRKKRPDLGRIPG-----RWPVAIFGILFSLFLIVALFFPPVGPATGSSLN  418

Query  305  WSVVMYLA  312
            +++++ +A
Sbjct  419  YAIILIVA  426


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 70.4 bits (173),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 60/319 (19%), Positives = 111/319 (35%), Gaps = 31/319 (10%)

Query  5    LILIIHVVGLFAI-IIPLWVLAPRNSAKAVFTEFNNAGGWDSDGTAT--LVGLSTTITAM  61
            LI II ++G   + II L    P + A   +   N        G     +        A 
Sbjct  144  LIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAF  203

Query  62   IGYDCSVHMSEEIKDAAETLPKAMMSAVAVNGV--LGFVMVVTLCFTLGDVDSILSTPTG  119
             G +     + E+K+  +++PKA++  +    +  +  ++ + L     D   +  + + 
Sbjct  204  TGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPWNDPGLLNDSASA  263

Query  120  FPFIQIFYNTTNSYAATNTMTAVLVITLTASTITEVATASRQLWSFARDRGLPFSSFFAY  179
                 IF+           + AV++    ++  + + + SR L+S ARD   P   F   
Sbjct  264  ASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLARDGLAPK--FLKK  321

Query  180  VSLTPPVSGGVTDRPMQVTPGWNIPLNSVMVSLAVTILLSLINIGSQVALAAIVSLTITS  239
            V                      +PL +++VS+ ++ LL+L+      A+     L I+ 
Sbjct  322  VD------------------KRGVPLRAILVSMVIS-LLALLLASLNPAIVFNFLLAISG  362

Query  240  LISAYILSIGCVLLKRIRGEPLPPRRWT-----LGRFGMAVNIAALAFLIPIFVFSFFPL  294
            L    +  +  +   R R       R           G    I  LA +I I +  F   
Sbjct  363  LSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILIIQFLYA  422

Query  295  TKTVDTKTMNWSVVMYLAM  313
               V     NW    + A 
Sbjct  423  FLPVPGGPKNWGAGSFAAA  441



Lambda      K        H        a         alpha
   0.325    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00030764

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              120     1e-30
CDD:366028 pfam00324, AA_permease, Amino acid permease                72.4    4e-14


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 120 bits (304),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 79/426 (19%), Positives = 163/426 (38%), Gaps = 56/426 (13%)

Query  1    MASMAPTSGGQYHWVSEFAPRRAQKFLSYITGRHQDLGVSRAELTLIGWLSATGWQCAIV  60
            ++S  P SGG Y ++     +       +                         W   ++
Sbjct  54   LSSALPRSGGIYVYLENAFGKFVAFLAGWSN-----------------------WFAYVL  90

Query  61   SIAFLAGTIIQGLVVLNDPTYEFQRWHGTLLVVAITTFSILFNTFLAKNLPMVEGLILII  120
             +A  A      L+    P      W    + +AI     + N    +    ++ ++ I+
Sbjct  91   GLASSASVAASYLLSALGPDLVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGIL  150

Query  121  HVVGLFAIII--PLWVLAPR-NSAKAVFTEFNNAGGWDSDGTATLVGLSTTITAMIGYDC  177
             ++    +II   L        +  +         GW         G    + +  G++ 
Sbjct  151  KLLLPLILIIILGLVTADGGGFNLLSGEWHTFFPDGWPG----VFAGFLGVLWSFTGFES  206

Query  178  SVHMSEEIKDAAETLPKAMMSAVAVNGVLGFVMVVTLCFTLGDVDSILSTPTGFPFIQIF  237
            + ++SEE+K     +PKA+   V + GVL  ++ +     + D D I  +        + 
Sbjct  207  AANVSEEVKKR--NVPKAIFIGVIIVGVLYILVNIAFFGVVPD-DEIALSSGLGQVAALL  263

Query  238  YNTTNSYAATNTMTAVLVITLTASTITEVATASRQLWSFARDRGLPFSSFFAYVSLTPPV  297
            +           +  +L ++L  +  T +  ASR L++ ARD  LPFS FFA V+     
Sbjct  264  FQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVN-----  318

Query  298  SGGVTDRPMQVTPGWNIPLNSVMVSLAVTILLSLINIGSQVALAAIVSLTITSLISAYIL  357
                          +  P+ +++++  ++++L L+ + S  A  A++SL+    + +Y+L
Sbjct  319  -------------KFGSPIRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLL  365

Query  358  SIGCVLLKRIRGEPLPPRRWTLGRFGMAVNIAALAFLIPIFVFSFFPLTKTVDTKTMNWS  417
             I  +L+ R +  P   R          V I  + F + + V  FFP        ++N++
Sbjct  366  PIIGLLILRKK-RPDLGRIP----GRWPVAIFGILFSLFLIVALFFPPVGPATGSSLNYA  420

Query  418  VVMYLA  423
            +++ +A
Sbjct  421  IILIVA  426


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 72.4 bits (178),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 60/319 (19%), Positives = 111/319 (35%), Gaps = 31/319 (10%)

Query  116  LILIIHVVGLFAI-IIPLWVLAPRNSAKAVFTEFNNAGGWDSDGTAT--LVGLSTTITAM  172
            LI II ++G   + II L    P + A   +   N        G     +        A 
Sbjct  144  LIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAF  203

Query  173  IGYDCSVHMSEEIKDAAETLPKAMMSAVAVNGV--LGFVMVVTLCFTLGDVDSILSTPTG  230
             G +     + E+K+  +++PKA++  +    +  +  ++ + L     D   +  + + 
Sbjct  204  TGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPWNDPGLLNDSASA  263

Query  231  FPFIQIFYNTTNSYAATNTMTAVLVITLTASTITEVATASRQLWSFARDRGLPFSSFFAY  290
                 IF+           + AV++    ++  + + + SR L+S ARD   P   F   
Sbjct  264  ASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLARDGLAPK--FLKK  321

Query  291  VSLTPPVSGGVTDRPMQVTPGWNIPLNSVMVSLAVTILLSLINIGSQVALAAIVSLTITS  350
            V                      +PL +++VS+ ++ LL+L+      A+     L I+ 
Sbjct  322  VD------------------KRGVPLRAILVSMVIS-LLALLLASLNPAIVFNFLLAISG  362

Query  351  LISAYILSIGCVLLKRIRGEPLPPRRWT-----LGRFGMAVNIAALAFLIPIFVFSFFPL  405
            L    +  +  +   R R       R           G    I  LA +I I +  F   
Sbjct  363  LSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILIIQFLYA  422

Query  406  TKTVDTKTMNWSVVMYLAM  424
               V     NW    + A 
Sbjct  423  FLPVPGGPKNWGAGSFAAA  441



Lambda      K        H        a         alpha
   0.325    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00030766

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              100     1e-24
CDD:366028 pfam00324, AA_permease, Amino acid permease                72.4    9e-15


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 100 bits (252),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 64/291 (22%), Positives = 129/291 (44%), Gaps = 14/291 (5%)

Query  6    ILIIHVVGLFAIIIPLWVLAPR-NSAKAVFTEFNNAGGWDSDGTATLVGLSTTITAMIGY  64
            IL + +  +  II+ L        +  +         GW         G    + +  G+
Sbjct  149  ILKLLLPLILIIILGLVTADGGGFNLLSGEWHTFFPDGWPG----VFAGFLGVLWSFTGF  204

Query  65   DCSVHMSEEIKDAAETLPKAMMSAVAVNGVLGFVMVVTLCFTLGDVDSILSTPTGFPFIQ  124
            + + ++SEE+K     +PKA+   V + GVL  ++ +     + D D I  +        
Sbjct  205  ESAANVSEEVKKR--NVPKAIFIGVIIVGVLYILVNIAFFGVVPD-DEIALSSGLGQVAA  261

Query  125  IFYNTTNSYAATNTMTAVLVITLTASTITEVATASRQLWSFARDRGLPFSSFFAYVTPGW  184
            + +           +  +L ++L  +  T +  ASR L++ ARD  LPFS FFA V   +
Sbjct  262  LLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNK-F  320

Query  185  NIPLNSVMVSLAVTILLSLINIGSQVALAAIVSLTITSLISAYILSIGCVLLKRIRGEPL  244
              P+ +++++  ++++L L+ + S  A  A++SL+    + +Y+L I  +L+ R +   L
Sbjct  321  GSPIRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPDL  380

Query  245  PPRRWTLGRFGMAVNIAALAFLIPIFVFSFFPLTKTVDTKTMNWSVVMYLA  295
                         V I  + F + + V  FFP        ++N+++++ +A
Sbjct  381  GRIPG-----RWPVAIFGILFSLFLIVALFFPPVGPATGSSLNYAIILIVA  426


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 72.4 bits (178),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 60/302 (20%), Positives = 111/302 (37%), Gaps = 14/302 (5%)

Query  5    LILIIHVVGLFAI-IIPLWVLAPRNSAKAVFTEFNNAGGWDSDGTAT--LVGLSTTITAM  61
            LI II ++G   + II L    P + A   +   N        G     +        A 
Sbjct  144  LIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAF  203

Query  62   IGYDCSVHMSEEIKDAAETLPKAMMSAVAVNGV--LGFVMVVTLCFTLGDVDSILSTPTG  119
             G +     + E+K+  +++PKA++  +    +  +  ++ + L     D   +  + + 
Sbjct  204  TGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPWNDPGLLNDSASA  263

Query  120  FPFIQIFYNTTNSYAATNTMTAVLVITLTASTITEVATASRQLWSFARDRGLPFSSFFAY  179
                 IF+           + AV++    ++  + + + SR L+S ARD   P   F   
Sbjct  264  ASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLARDGLAPK--FLKK  321

Query  180  VTPGWNIPLNSVMVSLAVTILLSLINIGSQVALAAIVSLTITSLISAYILSIGCVLLKRI  239
            V     +PL +++VS+ ++ LL+L+      A+     L I+ L    +  +  +   R 
Sbjct  322  V-DKRGVPLRAILVSMVIS-LLALLLASLNPAIVFNFLLAISGLSGLIVWGLISLSHLRF  379

Query  240  RGEPLPPRRWT-----LGRFGMAVNIAALAFLIPIFVFSFFPLTKTVDTKTMNWSVVMYL  294
            R       R           G    I  LA +I I +  F      V     NW    + 
Sbjct  380  RKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFA  439

Query  295  AM  296
            A 
Sbjct  440  AA  441



Lambda      K        H        a         alpha
   0.326    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00030765

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              78.9    3e-17
CDD:366028 pfam00324, AA_permease, Amino acid permease                63.1    7e-12


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 78.9 bits (195),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 51/233 (22%), Positives = 103/233 (44%), Gaps = 24/233 (10%)

Query  33   TLPKAMMSAVAVNGVLGFVMVVTLCFTLGDVDSILSTPTGFPFIQIFYNTTNSYAATNTM  92
             +PKA+   V + GVL  ++ +     + D D I  +        + +           +
Sbjct  218  NVPKAIFIGVIIVGVLYILVNIAFFGVVPD-DEIALSSGLGQVAALLFQAVGGKWGAIIV  276

Query  93   TAVLVITLTASTITEVATASRQLWSFARDRGLPFSSFFAYVSLTPPVSGGVTDRPMQVTP  152
              +L ++L  +  T +  ASR L++ ARD  LPFS FFA V+                  
Sbjct  277  VILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVN------------------  318

Query  153  GWNIPLNSVMVSLAVTILLSLINIGSQVALAAIVSLTITSLISAYILSIGCVLLKRIRGE  212
             +  P+ +++++  ++++L L+ + S  A  A++SL+    + +Y+L I  +L+ R +  
Sbjct  319  KFGSPIRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRP  378

Query  213  PLPPRRWTLGRFGMAVNIAALAFLIPIFVFSFFPLTKTVDTKTMNWSVVMYLA  265
             L             V I  + F + + V  FFP        ++N+++++ +A
Sbjct  379  DLGRIPG-----RWPVAIFGILFSLFLIVALFFPPVGPATGSSLNYAIILIVA  426


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 63.1 bits (154),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 47/253 (19%), Positives = 90/253 (36%), Gaps = 28/253 (11%)

Query  21   PNQAEEIKDAAETLPKAMMSAVAVNGV--LGFVMVVTLCFTLGDVDSILSTPTGFPFIQI  78
               A E+K+  +++PKA++  +    +  +  ++ + L     D   +  + +      I
Sbjct  210  GIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVI  269

Query  79   FYNTTNSYAATNTMTAVLVITLTASTITEVATASRQLWSFARDRGLPFSSFFAYVSLTPP  138
            F+           + AV++    ++  + + + SR L+S ARD   P   F   V     
Sbjct  270  FFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLARDGLAPK--FLKKVD----  323

Query  139  VSGGVTDRPMQVTPGWNIPLNSVMVSLAVTILLSLINIGSQVALAAIVSLTITSLISAYI  198
                             +PL +++VS+ ++ LL+L+      A+     L I+ L    +
Sbjct  324  --------------KRGVPLRAILVSMVIS-LLALLLASLNPAIVFNFLLAISGLSGLIV  368

Query  199  LSIGCVLLKRIRGEPLPPRRWT-----LGRFGMAVNIAALAFLIPIFVFSFFPLTKTVDT  253
              +  +   R R       R           G    I  LA +I I +  F      V  
Sbjct  369  WGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILIIQFLYAFLPVPG  428

Query  254  KTMNWSVVMYLAM  266
               NW    + A 
Sbjct  429  GPKNWGAGSFAAA  441



Lambda      K        H        a         alpha
   0.327    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00030767

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00035184

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              100     1e-24
CDD:366028 pfam00324, AA_permease, Amino acid permease                72.4    9e-15


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 100 bits (252),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 64/291 (22%), Positives = 129/291 (44%), Gaps = 14/291 (5%)

Query  6    ILIIHVVGLFAIIIPLWVLAPR-NSAKAVFTEFNNAGGWDSDGTATLVGLSTTITAMIGY  64
            IL + +  +  II+ L        +  +         GW         G    + +  G+
Sbjct  149  ILKLLLPLILIIILGLVTADGGGFNLLSGEWHTFFPDGWPG----VFAGFLGVLWSFTGF  204

Query  65   DCSVHMSEEIKDAAETLPKAMMSAVAVNGVLGFVMVVTLCFTLGDVDSILSTPTGFPFIQ  124
            + + ++SEE+K     +PKA+   V + GVL  ++ +     + D D I  +        
Sbjct  205  ESAANVSEEVKKR--NVPKAIFIGVIIVGVLYILVNIAFFGVVPD-DEIALSSGLGQVAA  261

Query  125  IFYNTTNSYAATNTMTAVLVITLTASTITEVATASRQLWSFARDRGLPFSSFFAYVTPGW  184
            + +           +  +L ++L  +  T +  ASR L++ ARD  LPFS FFA V   +
Sbjct  262  LLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNK-F  320

Query  185  NIPLNSVMVSLAVTILLSLINIGSQVALAAIVSLTITSLISAYILSIGCVLLKRIRGEPL  244
              P+ +++++  ++++L L+ + S  A  A++SL+    + +Y+L I  +L+ R +   L
Sbjct  321  GSPIRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPDL  380

Query  245  PPRRWTLGRFGMAVNIAALAFLIPIFVFSFFPLTKTVDTKTMNWSVVMYLA  295
                         V I  + F + + V  FFP        ++N+++++ +A
Sbjct  381  GRIPG-----RWPVAIFGILFSLFLIVALFFPPVGPATGSSLNYAIILIVA  426


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 72.4 bits (178),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 60/302 (20%), Positives = 111/302 (37%), Gaps = 14/302 (5%)

Query  5    LILIIHVVGLFAI-IIPLWVLAPRNSAKAVFTEFNNAGGWDSDGTAT--LVGLSTTITAM  61
            LI II ++G   + II L    P + A   +   N        G     +        A 
Sbjct  144  LIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAF  203

Query  62   IGYDCSVHMSEEIKDAAETLPKAMMSAVAVNGV--LGFVMVVTLCFTLGDVDSILSTPTG  119
             G +     + E+K+  +++PKA++  +    +  +  ++ + L     D   +  + + 
Sbjct  204  TGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPWNDPGLLNDSASA  263

Query  120  FPFIQIFYNTTNSYAATNTMTAVLVITLTASTITEVATASRQLWSFARDRGLPFSSFFAY  179
                 IF+           + AV++    ++  + + + SR L+S ARD   P   F   
Sbjct  264  ASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLARDGLAPK--FLKK  321

Query  180  VTPGWNIPLNSVMVSLAVTILLSLINIGSQVALAAIVSLTITSLISAYILSIGCVLLKRI  239
            V     +PL +++VS+ ++ LL+L+      A+     L I+ L    +  +  +   R 
Sbjct  322  V-DKRGVPLRAILVSMVIS-LLALLLASLNPAIVFNFLLAISGLSGLIVWGLISLSHLRF  379

Query  240  RGEPLPPRRWT-----LGRFGMAVNIAALAFLIPIFVFSFFPLTKTVDTKTMNWSVVMYL  294
            R       R           G    I  LA +I I +  F      V     NW    + 
Sbjct  380  RKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFA  439

Query  295  AM  296
            A 
Sbjct  440  AA  441



Lambda      K        H        a         alpha
   0.326    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00035183

Length=418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              124     5e-32
CDD:366028 pfam00324, AA_permease, Amino acid permease                75.4    2e-15


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 124 bits (313),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 78/409 (19%), Positives = 161/409 (39%), Gaps = 39/409 (10%)

Query  1    MASMAPTSGGQYHWVSEFAPRRAQKFLSYITGRHQDLGVSRAELTLIGWLSATGWQCAIV  60
            ++S  P SGG Y ++     +       +                         W   ++
Sbjct  54   LSSALPRSGGIYVYLENAFGKFVAFLAGWSN-----------------------WFAYVL  90

Query  61   SIAFLAGTIIQGLVVLNDPTYEFQRWHGTLLVVAITTFSILFNTFLAKNLPMVEGLILII  120
             +A  A      L+    P      W    + +AI     + N    +    ++ ++ I+
Sbjct  91   GLASSASVAASYLLSALGPDLVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGIL  150

Query  121  HVVGLFAIIIPL---WVLAPRNSAKAVFTEFNNAGGWDSDGTATLVGLSTTITAMIGYDC  177
             ++    +II L          +  +         GW         G    + +  G++ 
Sbjct  151  KLLLPLILIIILGLVTADGGGFNLLSGEWHTFFPDGWPG----VFAGFLGVLWSFTGFES  206

Query  178  SVHMSEEIKDAAETLPKAMMSAVAVNGVLGFVMVVTLCFTLGDVDSILSTPTGFPFIQIF  237
            + ++SEE+K     +PKA+   V + GVL  ++ +     + D D I  +        + 
Sbjct  207  AANVSEEVKKR--NVPKAIFIGVIIVGVLYILVNIAFFGVVPD-DEIALSSGLGQVAALL  263

Query  238  YNTTNSYAATNTMTAVLVITLTASTITEVATASRQLWSFARDRGLPFSSFFAYVTPGWNI  297
            +           +  +L ++L  +  T +  ASR L++ ARD  LPFS FFA V   +  
Sbjct  264  FQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNK-FGS  322

Query  298  PLNSVMVSLAVTILLSLINIGSQVALAAIVSLTITSLISAYILSIGCVLLKRIRGEPLPP  357
            P+ +++++  ++++L L+ + S  A  A++SL+    + +Y+L I  +L+ R +   L  
Sbjct  323  PIRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPDLGR  382

Query  358  RRWTLGRFGMAVNIAALAFLIPIFVFSFFPLTKTVDTKTMNWSVVMYLA  406
                       V I  + F + + V  FFP        ++N+++++ +A
Sbjct  383  IPG-----RWPVAIFGILFSLFLIVALFFPPVGPATGSSLNYAIILIVA  426


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 75.4 bits (186),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 60/302 (20%), Positives = 111/302 (37%), Gaps = 14/302 (5%)

Query  116  LILIIHVVGLFAI-IIPLWVLAPRNSAKAVFTEFNNAGGWDSDGTAT--LVGLSTTITAM  172
            LI II ++G   + II L    P + A   +   N        G     +        A 
Sbjct  144  LIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAF  203

Query  173  IGYDCSVHMSEEIKDAAETLPKAMMSAVAVNGV--LGFVMVVTLCFTLGDVDSILSTPTG  230
             G +     + E+K+  +++PKA++  +    +  +  ++ + L     D   +  + + 
Sbjct  204  TGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPWNDPGLLNDSASA  263

Query  231  FPFIQIFYNTTNSYAATNTMTAVLVITLTASTITEVATASRQLWSFARDRGLPFSSFFAY  290
                 IF+           + AV++    ++  + + + SR L+S ARD   P   F   
Sbjct  264  ASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLARDGLAPK--FLKK  321

Query  291  VTPGWNIPLNSVMVSLAVTILLSLINIGSQVALAAIVSLTITSLISAYILSIGCVLLKRI  350
            V     +PL +++VS+ ++ LL+L+      A+     L I+ L    +  +  +   R 
Sbjct  322  V-DKRGVPLRAILVSMVIS-LLALLLASLNPAIVFNFLLAISGLSGLIVWGLISLSHLRF  379

Query  351  RGEPLPPRRWT-----LGRFGMAVNIAALAFLIPIFVFSFFPLTKTVDTKTMNWSVVMYL  405
            R       R           G    I  LA +I I +  F      V     NW    + 
Sbjct  380  RKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFA  439

Query  406  AM  407
            A 
Sbjct  440  AA  441



Lambda      K        H        a         alpha
   0.326    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0755    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00035185

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              146     2e-39
CDD:366028 pfam00324, AA_permease, Amino acid permease                96.2    8e-22


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 146 bits (371),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 86/435 (20%), Positives = 174/435 (40%), Gaps = 39/435 (9%)

Query  90   GGTAGLIWGFLIVTAGFVLVFASIGEMASMAPTSGGQYHWVSEFAPRRAQKFLSYITGRH  149
            GG A ++WG++      + V     E++S  P SGG Y ++     +       +     
Sbjct  28   GGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGGIYVYLENAFGKFVAFLAGWSN---  84

Query  150  QDLGVSRAELTLIGWLSATGWQCAIVSIAFLAGTIIQGLVVLNDPTYEFQRWHGTLLVVA  209
                                W   ++ +A  A      L+    P      W    + +A
Sbjct  85   --------------------WFAYVLGLASSASVAASYLLSALGPDLVPTTWLTYGIAIA  124

Query  210  ITTFSILFNTFLAKNLPMVEGLILIIHVVGLFAIII--PLWVLAPR-NSAKAVFTEFNNA  266
            I     + N    +    ++ ++ I+ ++    +II   L        +  +        
Sbjct  125  ILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFNLLSGEWHTFFP  184

Query  267  GGWDSDGTATLVGLSTTITAMIGYDCSVHMSEEIKDAAETLPKAMMSAVAVNGVLGFVMV  326
             GW         G    + +  G++ + ++SEE+K     +PKA+   V + GVL  ++ 
Sbjct  185  DGWPG----VFAGFLGVLWSFTGFESAANVSEEVKKR--NVPKAIFIGVIIVGVLYILVN  238

Query  327  VTLCFTLGDVDSILSTPTGFPFIQIFYNTTNSYAATNTMTAVLVITLTASTITEVATASR  386
            +     + D D I  +        + +           +  +L ++L  +  T +  ASR
Sbjct  239  IAFFGVVPD-DEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGASR  297

Query  387  QLWSFARDRGLPFSSFFAYVTPGWNIPLNSVMVSLAVTILLSLINIGSQVALAAIVSLTI  446
             L++ ARD  LPFS FFA V   +  P+ +++++  ++++L L+ + S  A  A++SL+ 
Sbjct  298  LLYALARDGVLPFSRFFAKVNK-FGSPIRAIILTAILSLILLLLFLLSPAAYNALLSLSA  356

Query  447  TSLISAYILSIGCVLLKRIRGEPLPPRRWTLGRFGMAVNIAALAFLIPIFVFSFFPLTKT  506
               + +Y+L I  +L+ R +  P   R          V I  + F + + V  FFP    
Sbjct  357  YGYLLSYLLPIIGLLILRKK-RPDLGRIP----GRWPVAIFGILFSLFLIVALFFPPVGP  411

Query  507  VDTKTMNWSVVMYLA  521
                ++N+++++ +A
Sbjct  412  ATGSSLNYAIILIVA  426


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 96.2 bits (240),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 92/458 (20%), Positives = 159/458 (35%), Gaps = 45/458 (10%)

Query  79   ILTLLSSALTDGGTAGLIWGFLIVTAGFVLVFASIGEMASMAPTSGGQYHWVSEFAPRRA  138
            +     S L   G AG + G+LI      LV  S+GE+++  P SGG Y + S F     
Sbjct  15   LFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASRFLGPSL  74

Query  139  QKFLSYITGRHQDLGVSRAELTLIGWLSATGWQCAIVSIAFLAGTIIQGLVVLNDPTYEF  198
                                    GW     W   +      A  +IQ   ++ D  Y +
Sbjct  75   GFA--------------------TGWNYWLSWITVLALELTAASILIQFWELVPDIPYLW  114

Query  199  QRWHGTLLVVAITTFSILF-NTFLAKNLPMVE---GLILIIHVVGLFAI-IIPLWVLAPR  253
                   +  A+    +   N    K     E    LI II ++G   + II L    P 
Sbjct  115  -------VWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPN  167

Query  254  NSAKAVFTEFNNAGGWDSDGTAT--LVGLSTTITAMIGYDCSVHMSEEIKDAAETLPKAM  311
            + A   +   N        G     +        A  G +     + E+K+  +++PKA+
Sbjct  168  DGAIFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAI  227

Query  312  MSAVAVNGV--LGFVMVVTLCFTLGDVDSILSTPTGFPFIQIFYNTTNSYAATNTMTAVL  369
            +  +    +  +  ++ + L     D   +  + +      IF+           + AV+
Sbjct  228  LQVIWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVI  287

Query  370  VITLTASTITEVATASRQLWSFARDRGLPFSSFFAYVTPGWNIPLNSVMVSLAVTILLSL  429
            +    ++  + + + SR L+S ARD   P   F   V     +PL +++VS+ ++ LL+L
Sbjct  288  LTAALSAANSSLYSGSRMLYSLARDGLAPK--FLKKV-DKRGVPLRAILVSMVIS-LLAL  343

Query  430  INIGSQVALAAIVSLTITSLISAYILSIGCVLLKRIRGEPLPPRRWT-----LGRFGMAV  484
            +      A+     L I+ L    +  +  +   R R       R           G   
Sbjct  344  LLASLNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLG  403

Query  485  NIAALAFLIPIFVFSFFPLTKTVDTKTMNWSVVMYLAM  522
             I  LA +I I +  F      V     NW    + A 
Sbjct  404  VILGLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFAAA  441



Lambda      K        H        a         alpha
   0.326    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00030769

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              104     1e-25
CDD:366028 pfam00324, AA_permease, Amino acid permease                74.3    3e-15


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 104 bits (261),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 64/291 (22%), Positives = 129/291 (44%), Gaps = 14/291 (5%)

Query  6    ILIIHVVGLFAIIIPLWVLAPR-NSAKAVFTEFNNAGGWDSDGTATLVGLSTTITAMIGY  64
            IL + +  +  II+ L        +  +         GW         G    + +  G+
Sbjct  149  ILKLLLPLILIIILGLVTADGGGFNLLSGEWHTFFPDGWPG----VFAGFLGVLWSFTGF  204

Query  65   DCSVHMSEEIKDAAETLPKAMMSAVAVNGVLGFVMVVTLCFTLGDVDSILSTPTGFPFIQ  124
            + + ++SEE+K     +PKA+   V + GVL  ++ +     + D D I  +        
Sbjct  205  ESAANVSEEVKKR--NVPKAIFIGVIIVGVLYILVNIAFFGVVPD-DEIALSSGLGQVAA  261

Query  125  IFYNTTNSYAATNTMTAVLVITLTASTITEVATASRQLWSFARDRGLPFSSFFAYVTPGW  184
            + +           +  +L ++L  +  T +  ASR L++ ARD  LPFS FFA V   +
Sbjct  262  LLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNK-F  320

Query  185  NIPLNSVMVSLAVTILLSLINIGSQVALAAIVSLTITSLISAYILSIGCVLLKRIRGEPL  244
              P+ +++++  ++++L L+ + S  A  A++SL+    + +Y+L I  +L+ R +   L
Sbjct  321  GSPIRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPDL  380

Query  245  PPRRWTLGRFGMAVNIAALAFLIPIFVFSFFPLTKTVDTKTMNWSVVMYLA  295
                         V I  + F + + V  FFP        ++N+++++ +A
Sbjct  381  GRIPG-----RWPVAIFGILFSLFLIVALFFPPVGPATGSSLNYAIILIVA  426


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 74.3 bits (183),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 60/302 (20%), Positives = 111/302 (37%), Gaps = 14/302 (5%)

Query  5    LILIIHVVGLFAI-IIPLWVLAPRNSAKAVFTEFNNAGGWDSDGTAT--LVGLSTTITAM  61
            LI II ++G   + II L    P + A   +   N        G     +        A 
Sbjct  144  LIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAF  203

Query  62   IGYDCSVHMSEEIKDAAETLPKAMMSAVAVNGV--LGFVMVVTLCFTLGDVDSILSTPTG  119
             G +     + E+K+  +++PKA++  +    +  +  ++ + L     D   +  + + 
Sbjct  204  TGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPWNDPGLLNDSASA  263

Query  120  FPFIQIFYNTTNSYAATNTMTAVLVITLTASTITEVATASRQLWSFARDRGLPFSSFFAY  179
                 IF+           + AV++    ++  + + + SR L+S ARD   P   F   
Sbjct  264  ASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLARDGLAPK--FLKK  321

Query  180  VTPGWNIPLNSVMVSLAVTILLSLINIGSQVALAAIVSLTITSLISAYILSIGCVLLKRI  239
            V     +PL +++VS+ ++ LL+L+      A+     L I+ L    +  +  +   R 
Sbjct  322  V-DKRGVPLRAILVSMVIS-LLALLLASLNPAIVFNFLLAISGLSGLIVWGLISLSHLRF  379

Query  240  RGEPLPPRRWT-----LGRFGMAVNIAALAFLIPIFVFSFFPLTKTVDTKTMNWSVVMYL  294
            R       R           G    I  LA +I I +  F      V     NW    + 
Sbjct  380  RKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFA  439

Query  295  AM  296
            A 
Sbjct  440  AA  441



Lambda      K        H        a         alpha
   0.326    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00030768

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              142     1e-37
CDD:366028 pfam00324, AA_permease, Amino acid permease                93.2    1e-20


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 142 bits (360),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 86/452 (19%), Positives = 175/452 (39%), Gaps = 56/452 (12%)

Query  90   GGTAGLIWGFLIVTAGFVLVFASIGEMASMAPTSGGQYHWVSEFAPRRAQKFLSYITGRH  149
            GG A ++WG++      + V     E++S  P SGG Y ++     +       +     
Sbjct  28   GGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGGIYVYLENAFGKFVAFLAGWSN---  84

Query  150  QDLGVSRAELTLIGWLSATGWQCAIVSIAFLAGTIIQGLVVLNDPTYEFQRWHGTLLVVA  209
                                W   ++ +A  A      L+    P      W    + +A
Sbjct  85   --------------------WFAYVLGLASSASVAASYLLSALGPDLVPTTWLTYGIAIA  124

Query  210  ITTFSILFNTFLAKNLPMVEGLILIIHVVGLFAIII--PLWVLAPR-NSAKAVFTEFNNA  266
            I     + N    +    ++ ++ I+ ++    +II   L        +  +        
Sbjct  125  ILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFNLLSGEWHTFFP  184

Query  267  GGWDSDGTATLVGLSTTITAMIGYDCSVHMSEEIKDAAETLPKAMMSAVAVNGVLGFVMV  326
             GW         G    + +  G++ + ++SEE+K     +PKA+   V + GVL  ++ 
Sbjct  185  DGWPG----VFAGFLGVLWSFTGFESAANVSEEVKKR--NVPKAIFIGVIIVGVLYILVN  238

Query  327  VTLCFTLGDVDSILSTPTGFPFIQIFYNTTNSYAATNTMTAVLVITLTASTITEVATASR  386
            +     + D D I  +        + +           +  +L ++L  +  T +  ASR
Sbjct  239  IAFFGVVPD-DEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGASR  297

Query  387  QLWSFARDRGLPFSSFFAYVSLTPPVSGGVTDRPMQVTPGWNIPLNSVMVSLAVTILLSL  446
             L++ ARD  LPFS FFA V+                   +  P+ +++++  ++++L L
Sbjct  298  LLYALARDGVLPFSRFFAKVN------------------KFGSPIRAIILTAILSLILLL  339

Query  447  INIGSQVALAAIVSLTITSLISAYILSIGCVLLKRIRGEPLPPRRWTLGRFGMAVNIAAL  506
            + + S  A  A++SL+    + +Y+L I  +L+ R +  P   R          V I  +
Sbjct  340  LFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKK-RPDLGRIP----GRWPVAIFGI  394

Query  507  AFLIPIFVFSFFPLTKTVDTKTMNWSVVMYLA  538
             F + + V  FFP        ++N+++++ +A
Sbjct  395  LFSLFLIVALFFPPVGPATGSSLNYAIILIVA  426


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 93.2 bits (232),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 96/492 (20%), Positives = 166/492 (34%), Gaps = 68/492 (14%)

Query  62   FISILGFGCTLISTWEVILTLLSSALTDGGTAGLIWGFLIVTAGFVLVFASIGEMASMAP  121
             I++ G    +I T   +     S L   G AG + G+LI      LV  S+GE+++  P
Sbjct  4    MIALGG----VIGT--GLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGP  57

Query  122  TSGGQYHWVSEFAPRRAQKFLSYITGRHQDLGVSRAELTLIGWLSATGWQCAIVSIAFLA  181
             SGG Y + S F                             GW     W   +      A
Sbjct  58   VSGGFYTYASRFLGPSLGFA--------------------TGWNYWLSWITVLALELTAA  97

Query  182  GTIIQGLVVLNDPTYEFQRWHGTLLVVAITTFSILF-NTFLAKNLPMVE---GLILIIHV  237
              +IQ   ++ D  Y +       +  A+    +   N    K     E    LI II +
Sbjct  98   SILIQFWELVPDIPYLW-------VWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAI  150

Query  238  VGLFAI-IIPLWVLAPRNSAKAVFTEFNNAGGWDSDGTAT--LVGLSTTITAMIGYDCSV  294
            +G   + II L    P + A   +   N        G     +        A  G +   
Sbjct  151  IGFIIVGIILLSGGNPNDGAIFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVG  210

Query  295  HMSEEIKDAAETLPKAMMSAVAVNGV--LGFVMVVTLCFTLGDVDSILSTPTGFPFIQIF  352
              + E+K+  +++PKA++  +    +  +  ++ + L     D   +  + +      IF
Sbjct  211  IAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIF  270

Query  353  YNTTNSYAATNTMTAVLVITLTASTITEVATASRQLWSFARDRGLPFSSFFAYVSLTPPV  412
            +           + AV++    ++  + + + SR L+S ARD   P   F   V      
Sbjct  271  FKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLARDGLAPK--FLKKVD-----  323

Query  413  SGGVTDRPMQVTPGWNIPLNSVMVSLAVTILLSLINIGSQVALAAIVSLTITSLISAYIL  472
                            +PL +++VS+ ++ LL+L+      A+     L I+ L    + 
Sbjct  324  -------------KRGVPLRAILVSMVIS-LLALLLASLNPAIVFNFLLAISGLSGLIVW  369

Query  473  SIGCVLLKRIRGEPLPPRRWT-----LGRFGMAVNIAALAFLIPIFVFSFFPLTKTVDTK  527
             +  +   R R       R           G    I  LA +I I +  F      V   
Sbjct  370  GLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILIIQFLYAFLPVPGG  429

Query  528  TMNWSVVMYLAM  539
              NW    + A 
Sbjct  430  PKNWGAGSFAAA  441



Lambda      K        H        a         alpha
   0.325    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 714336584


Query= TCONS_00030770

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              73.9    8e-16


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 73.9 bits (182),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 48/211 (23%), Positives = 98/211 (46%), Gaps = 7/211 (3%)

Query  1    MMSAVAVNGVLGFVMVVTLCFTLGDVDSILSTPTGFPFIQIFYNTTNSYAATNTMTAVLV  60
            +   V + GVL  ++ +     + D D I  +        + +           +  +L 
Sbjct  223  IFIGVIIVGVLYILVNIAFFGVVPD-DEIALSSGLGQVAALLFQAVGGKWGAIIVVILLA  281

Query  61   ITLTASTITEVATASRQLWSFARDRGLPFSSFFAYVTPGWNIPLNSVMVSLAVTILLSLI  120
            ++L  +  T +  ASR L++ ARD  LPFS FFA V   +  P+ +++++  ++++L L+
Sbjct  282  LSLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNK-FGSPIRAIILTAILSLILLLL  340

Query  121  NIGSQVALAAIVSLTITSLISAYILSIGCVLLKRIRGEPLPPRRWTLGRFGMAVNIAALA  180
             + S  A  A++SL+    + +Y+L I  +L+ R +   L             V I  + 
Sbjct  341  FLLSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPDLGRIPG-----RWPVAIFGIL  395

Query  181  FLIPIFVFSFFPLTKTVDTKTMNWSVVMYLA  211
            F + + V  FFP        ++N+++++ +A
Sbjct  396  FSLFLIVALFFPPVGPATGSSLNYAIILIVA  426



Lambda      K        H        a         alpha
   0.328    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00030771

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00035187

Length=657
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395540 pfam00667, FAD_binding_1, FAD binding domain. This dom...  169     3e-49


>CDD:395540 pfam00667, FAD_binding_1, FAD binding domain.  This domain is 
found in sulfite reductase, NADPH cytochrome P450 reductase, 
Nitric oxide synthase and methionine synthase reductase.
Length=219

 Score = 169 bits (431),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 76/240 (32%), Positives = 112/240 (47%), Gaps = 22/240 (9%)

Query  222  PHPPYNVFRAPLHHARELTKPGAEKRTFHFDIDVTDYPAESGDVDFVVGGAIGVCPKNKE  281
            P      F AP+   RELT P +++   H ++D++        + +  G  +GV P N E
Sbjct  1    PFDAKKPFTAPVLSNRELTSPSSDRNCIHVELDISGS-----GLTYQTGDHLGVYPPNNE  55

Query  282  EEVDDIFNQLGIPKSIRDKKITLHTTKGRWPTIWGDDQPRDLITTRRELLTWCSDIQSYP  341
            E V+++  +LG+     D  + L T   R         PR   TT R+ L +  DI   P
Sbjct  56   ELVEELLERLGLDPK-PDTVVLLKTLDER------VKPPRLPPTTYRQALKYYLDITG-P  107

Query  342  PTKPLFRLLAEYATEPNEKKILMFLSSAQGQGAFCDLRTGSYITVSQLLHAFPSSQPPLD  401
            P+K L RLLA++A E  EK+ L FLSS  G   +   +     T+ ++L  FPS + P D
Sbjct  108  PSKQLLRLLAQFAPEEEEKQRLEFLSSDAGAREYKRWKLNHAPTLLEVLEEFPSVKLPAD  167

Query  402  HLLSVLNTLMPRFYSLSQDPLISCQRQDTKCRRLIEIAVSVAETE-DWRGGTRTGVGSGY  460
             LL+ L  L PR+YS+S    +            + + V V E E D  G    GV S +
Sbjct  168  FLLTQLPQLQPRYYSISSSSKVHPNE--------VHLTVVVVEYETDGEGRIHYGVCSNW  219



Lambda      K        H        a         alpha
   0.316    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 831781560


Query= TCONS_00030772

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395540 pfam00667, FAD_binding_1, FAD binding domain. This dom...  154     6e-45


>CDD:395540 pfam00667, FAD_binding_1, FAD binding domain.  This domain is 
found in sulfite reductase, NADPH cytochrome P450 reductase, 
Nitric oxide synthase and methionine synthase reductase.
Length=219

 Score = 154 bits (390),  Expect = 6e-45, Method: Composition-based stats.
 Identities = 67/206 (33%), Positives = 100/206 (49%), Gaps = 13/206 (6%)

Query  222  PHPPYNVFRAPLHHARELTKPGAEKRTFHFDIDVTDYPAESGDVDFVVGGAIGVCPKNKE  281
            P      F AP+   RELT P +++   H ++D++        + +  G  +GV P N E
Sbjct  1    PFDAKKPFTAPVLSNRELTSPSSDRNCIHVELDISGS-----GLTYQTGDHLGVYPPNNE  55

Query  282  EEVDDIFNQLGIPKSIRDKKITLHTTKGRWPTIWGDDQPRDLITTRRELLTWCSDIQSYP  341
            E V+++  +LG+     D  + L T   R         PR   TT R+ L +  DI   P
Sbjct  56   ELVEELLERLGLDPK-PDTVVLLKTLDER------VKPPRLPPTTYRQALKYYLDITG-P  107

Query  342  PTKPLFRLLAEYATEPNEKKILMFLSSAQGQGAFCDLRTGSYITVSQLLHAFPSSQPPLD  401
            P+K L RLLA++A E  EK+ L FLSS  G   +   +     T+ ++L  FPS + P D
Sbjct  108  PSKQLLRLLAQFAPEEEEKQRLEFLSSDAGAREYKRWKLNHAPTLLEVLEEFPSVKLPAD  167

Query  402  HLLSVLNTLMPRFYSLSQDPLISCQR  427
             LL+ L  L PR+YS+S    +    
Sbjct  168  FLLTQLPQLQPRYYSISSSSKVHPNE  193



Lambda      K        H        a         alpha
   0.315    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00035188

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395540 pfam00667, FAD_binding_1, FAD binding domain. This dom...  169     2e-49


>CDD:395540 pfam00667, FAD_binding_1, FAD binding domain.  This domain is 
found in sulfite reductase, NADPH cytochrome P450 reductase, 
Nitric oxide synthase and methionine synthase reductase.
Length=219

 Score = 169 bits (430),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 76/240 (32%), Positives = 112/240 (47%), Gaps = 22/240 (9%)

Query  222  PHPPYNVFRAPLHHARELTKPGAEKRTFHFDIDVTDYPAESGDVDFVVGGAIGVCPKNKE  281
            P      F AP+   RELT P +++   H ++D++        + +  G  +GV P N E
Sbjct  1    PFDAKKPFTAPVLSNRELTSPSSDRNCIHVELDISGS-----GLTYQTGDHLGVYPPNNE  55

Query  282  EEVDDIFNQLGIPKSIRDKKITLHTTKGRWPTIWGDDQPRDLITTRRELLTWCSDIQSYP  341
            E V+++  +LG+     D  + L T   R         PR   TT R+ L +  DI   P
Sbjct  56   ELVEELLERLGLDPK-PDTVVLLKTLDER------VKPPRLPPTTYRQALKYYLDITG-P  107

Query  342  PTKPLFRLLAEYATEPNEKKILMFLSSAQGQGAFCDLRTGSYITVSQLLHAFPSSQPPLD  401
            P+K L RLLA++A E  EK+ L FLSS  G   +   +     T+ ++L  FPS + P D
Sbjct  108  PSKQLLRLLAQFAPEEEEKQRLEFLSSDAGAREYKRWKLNHAPTLLEVLEEFPSVKLPAD  167

Query  402  HLLSVLNTLMPRFYSLSQDPLISCQRQDTKCRRLIEIAVSVAETE-DWRGGTRTGVGSGY  460
             LL+ L  L PR+YS+S    +            + + V V E E D  G    GV S +
Sbjct  168  FLLTQLPQLQPRYYSISSSSKVHPNE--------VHLTVVVVEYETDGEGRIHYGVCSNW  219



Lambda      K        H        a         alpha
   0.316    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787537860


Query= TCONS_00035189

Length=649
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395540 pfam00667, FAD_binding_1, FAD binding domain. This dom...  169     2e-49


>CDD:395540 pfam00667, FAD_binding_1, FAD binding domain.  This domain is 
found in sulfite reductase, NADPH cytochrome P450 reductase, 
Nitric oxide synthase and methionine synthase reductase.
Length=219

 Score = 169 bits (431),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 76/240 (32%), Positives = 112/240 (47%), Gaps = 22/240 (9%)

Query  214  PHPPYNVFRAPLHHARELTKPGAEKRTFHFDIDVTDYPAESGDVDFVVGGAIGVCPKNKE  273
            P      F AP+   RELT P +++   H ++D++        + +  G  +GV P N E
Sbjct  1    PFDAKKPFTAPVLSNRELTSPSSDRNCIHVELDISGS-----GLTYQTGDHLGVYPPNNE  55

Query  274  EEVDDIFNQLGIPKSIRDKKITLHTTKGRWPTIWGDDQPRDLITTRRELLTWCSDIQSYP  333
            E V+++  +LG+     D  + L T   R         PR   TT R+ L +  DI   P
Sbjct  56   ELVEELLERLGLDPK-PDTVVLLKTLDER------VKPPRLPPTTYRQALKYYLDITG-P  107

Query  334  PTKPLFRLLAEYATEPNEKKILMFLSSAQGQGAFCDLRTGSYITVSQLLHAFPSSQPPLD  393
            P+K L RLLA++A E  EK+ L FLSS  G   +   +     T+ ++L  FPS + P D
Sbjct  108  PSKQLLRLLAQFAPEEEEKQRLEFLSSDAGAREYKRWKLNHAPTLLEVLEEFPSVKLPAD  167

Query  394  HLLSVLNTLMPRFYSLSQDPLISCQRQDTKCRRLIEIAVSVAETE-DWRGGTRTGVGSGY  452
             LL+ L  L PR+YS+S    +            + + V V E E D  G    GV S +
Sbjct  168  FLLTQLPQLQPRYYSISSSSKVHPNE--------VHLTVVVVEYETDGEGRIHYGVCSNW  219



Lambda      K        H        a         alpha
   0.316    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 819983240


Query= TCONS_00030773

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395540 pfam00667, FAD_binding_1, FAD binding domain. This dom...  169     2e-49


>CDD:395540 pfam00667, FAD_binding_1, FAD binding domain.  This domain is 
found in sulfite reductase, NADPH cytochrome P450 reductase, 
Nitric oxide synthase and methionine synthase reductase.
Length=219

 Score = 169 bits (431),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 76/240 (32%), Positives = 112/240 (47%), Gaps = 22/240 (9%)

Query  222  PHPPYNVFRAPLHHARELTKPGAEKRTFHFDIDVTDYPAESGDVDFVVGGAIGVCPKNKE  281
            P      F AP+   RELT P +++   H ++D++        + +  G  +GV P N E
Sbjct  1    PFDAKKPFTAPVLSNRELTSPSSDRNCIHVELDISGS-----GLTYQTGDHLGVYPPNNE  55

Query  282  EEVDDIFNQLGIPKSIRDKKITLHTTKGRWPTIWGDDQPRDLITTRRELLTWCSDIQSYP  341
            E V+++  +LG+     D  + L T   R         PR   TT R+ L +  DI   P
Sbjct  56   ELVEELLERLGLDPK-PDTVVLLKTLDER------VKPPRLPPTTYRQALKYYLDITG-P  107

Query  342  PTKPLFRLLAEYATEPNEKKILMFLSSAQGQGAFCDLRTGSYITVSQLLHAFPSSQPPLD  401
            P+K L RLLA++A E  EK+ L FLSS  G   +   +     T+ ++L  FPS + P D
Sbjct  108  PSKQLLRLLAQFAPEEEEKQRLEFLSSDAGAREYKRWKLNHAPTLLEVLEEFPSVKLPAD  167

Query  402  HLLSVLNTLMPRFYSLSQDPLISCQRQDTKCRRLIEIAVSVAETE-DWRGGTRTGVGSGY  460
             LL+ L  L PR+YS+S    +            + + V V E E D  G    GV S +
Sbjct  168  FLLTQLPQLQPRYYSISSSSKVHPNE--------VHLTVVVVEYETDGEGRIHYGVCSNW  219



Lambda      K        H        a         alpha
   0.316    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 817033660


Query= TCONS_00030774

Length=657
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395540 pfam00667, FAD_binding_1, FAD binding domain. This dom...  169     3e-49


>CDD:395540 pfam00667, FAD_binding_1, FAD binding domain.  This domain is 
found in sulfite reductase, NADPH cytochrome P450 reductase, 
Nitric oxide synthase and methionine synthase reductase.
Length=219

 Score = 169 bits (431),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 76/240 (32%), Positives = 112/240 (47%), Gaps = 22/240 (9%)

Query  222  PHPPYNVFRAPLHHARELTKPGAEKRTFHFDIDVTDYPAESGDVDFVVGGAIGVCPKNKE  281
            P      F AP+   RELT P +++   H ++D++        + +  G  +GV P N E
Sbjct  1    PFDAKKPFTAPVLSNRELTSPSSDRNCIHVELDISGS-----GLTYQTGDHLGVYPPNNE  55

Query  282  EEVDDIFNQLGIPKSIRDKKITLHTTKGRWPTIWGDDQPRDLITTRRELLTWCSDIQSYP  341
            E V+++  +LG+     D  + L T   R         PR   TT R+ L +  DI   P
Sbjct  56   ELVEELLERLGLDPK-PDTVVLLKTLDER------VKPPRLPPTTYRQALKYYLDITG-P  107

Query  342  PTKPLFRLLAEYATEPNEKKILMFLSSAQGQGAFCDLRTGSYITVSQLLHAFPSSQPPLD  401
            P+K L RLLA++A E  EK+ L FLSS  G   +   +     T+ ++L  FPS + P D
Sbjct  108  PSKQLLRLLAQFAPEEEEKQRLEFLSSDAGAREYKRWKLNHAPTLLEVLEEFPSVKLPAD  167

Query  402  HLLSVLNTLMPRFYSLSQDPLISCQRQDTKCRRLIEIAVSVAETE-DWRGGTRTGVGSGY  460
             LL+ L  L PR+YS+S    +            + + V V E E D  G    GV S +
Sbjct  168  FLLTQLPQLQPRYYSISSSSKVHPNE--------VHLTVVVVEYETDGEGRIHYGVCSNW  219



Lambda      K        H        a         alpha
   0.316    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 831781560


Query= TCONS_00035190

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395540 pfam00667, FAD_binding_1, FAD binding domain. This dom...  169     2e-49


>CDD:395540 pfam00667, FAD_binding_1, FAD binding domain.  This domain is 
found in sulfite reductase, NADPH cytochrome P450 reductase, 
Nitric oxide synthase and methionine synthase reductase.
Length=219

 Score = 169 bits (431),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 76/240 (32%), Positives = 112/240 (47%), Gaps = 22/240 (9%)

Query  222  PHPPYNVFRAPLHHARELTKPGAEKRTFHFDIDVTDYPAESGDVDFVVGGAIGVCPKNKE  281
            P      F AP+   RELT P +++   H ++D++        + +  G  +GV P N E
Sbjct  1    PFDAKKPFTAPVLSNRELTSPSSDRNCIHVELDISGS-----GLTYQTGDHLGVYPPNNE  55

Query  282  EEVDDIFNQLGIPKSIRDKKITLHTTKGRWPTIWGDDQPRDLITTRRELLTWCSDIQSYP  341
            E V+++  +LG+     D  + L T   R         PR   TT R+ L +  DI   P
Sbjct  56   ELVEELLERLGLDPK-PDTVVLLKTLDER------VKPPRLPPTTYRQALKYYLDITG-P  107

Query  342  PTKPLFRLLAEYATEPNEKKILMFLSSAQGQGAFCDLRTGSYITVSQLLHAFPSSQPPLD  401
            P+K L RLLA++A E  EK+ L FLSS  G   +   +     T+ ++L  FPS + P D
Sbjct  108  PSKQLLRLLAQFAPEEEEKQRLEFLSSDAGAREYKRWKLNHAPTLLEVLEEFPSVKLPAD  167

Query  402  HLLSVLNTLMPRFYSLSQDPLISCQRQDTKCRRLIEIAVSVAETE-DWRGGTRTGVGSGY  460
             LL+ L  L PR+YS+S    +            + + V V E E D  G    GV S +
Sbjct  168  FLLTQLPQLQPRYYSISSSSKVHPNE--------VHLTVVVVEYETDGEGRIHYGVCSNW  219



Lambda      K        H        a         alpha
   0.316    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 817033660


Query= TCONS_00035192

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395540 pfam00667, FAD_binding_1, FAD binding domain. This dom...  169     2e-49


>CDD:395540 pfam00667, FAD_binding_1, FAD binding domain.  This domain is 
found in sulfite reductase, NADPH cytochrome P450 reductase, 
Nitric oxide synthase and methionine synthase reductase.
Length=219

 Score = 169 bits (431),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 76/240 (32%), Positives = 112/240 (47%), Gaps = 22/240 (9%)

Query  222  PHPPYNVFRAPLHHARELTKPGAEKRTFHFDIDVTDYPAESGDVDFVVGGAIGVCPKNKE  281
            P      F AP+   RELT P +++   H ++D++        + +  G  +GV P N E
Sbjct  1    PFDAKKPFTAPVLSNRELTSPSSDRNCIHVELDISGS-----GLTYQTGDHLGVYPPNNE  55

Query  282  EEVDDIFNQLGIPKSIRDKKITLHTTKGRWPTIWGDDQPRDLITTRRELLTWCSDIQSYP  341
            E V+++  +LG+     D  + L T   R         PR   TT R+ L +  DI   P
Sbjct  56   ELVEELLERLGLDPK-PDTVVLLKTLDER------VKPPRLPPTTYRQALKYYLDITG-P  107

Query  342  PTKPLFRLLAEYATEPNEKKILMFLSSAQGQGAFCDLRTGSYITVSQLLHAFPSSQPPLD  401
            P+K L RLLA++A E  EK+ L FLSS  G   +   +     T+ ++L  FPS + P D
Sbjct  108  PSKQLLRLLAQFAPEEEEKQRLEFLSSDAGAREYKRWKLNHAPTLLEVLEEFPSVKLPAD  167

Query  402  HLLSVLNTLMPRFYSLSQDPLISCQRQDTKCRRLIEIAVSVAETE-DWRGGTRTGVGSGY  460
             LL+ L  L PR+YS+S    +            + + V V E E D  G    GV S +
Sbjct  168  FLLTQLPQLQPRYYSISSSSKVHPNE--------VHLTVVVVEYETDGEGRIHYGVCSNW  219



Lambda      K        H        a         alpha
   0.316    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 817033660


Query= TCONS_00030775

Length=657
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395540 pfam00667, FAD_binding_1, FAD binding domain. This dom...  169     3e-49


>CDD:395540 pfam00667, FAD_binding_1, FAD binding domain.  This domain is 
found in sulfite reductase, NADPH cytochrome P450 reductase, 
Nitric oxide synthase and methionine synthase reductase.
Length=219

 Score = 169 bits (431),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 76/240 (32%), Positives = 112/240 (47%), Gaps = 22/240 (9%)

Query  222  PHPPYNVFRAPLHHARELTKPGAEKRTFHFDIDVTDYPAESGDVDFVVGGAIGVCPKNKE  281
            P      F AP+   RELT P +++   H ++D++        + +  G  +GV P N E
Sbjct  1    PFDAKKPFTAPVLSNRELTSPSSDRNCIHVELDISGS-----GLTYQTGDHLGVYPPNNE  55

Query  282  EEVDDIFNQLGIPKSIRDKKITLHTTKGRWPTIWGDDQPRDLITTRRELLTWCSDIQSYP  341
            E V+++  +LG+     D  + L T   R         PR   TT R+ L +  DI   P
Sbjct  56   ELVEELLERLGLDPK-PDTVVLLKTLDER------VKPPRLPPTTYRQALKYYLDITG-P  107

Query  342  PTKPLFRLLAEYATEPNEKKILMFLSSAQGQGAFCDLRTGSYITVSQLLHAFPSSQPPLD  401
            P+K L RLLA++A E  EK+ L FLSS  G   +   +     T+ ++L  FPS + P D
Sbjct  108  PSKQLLRLLAQFAPEEEEKQRLEFLSSDAGAREYKRWKLNHAPTLLEVLEEFPSVKLPAD  167

Query  402  HLLSVLNTLMPRFYSLSQDPLISCQRQDTKCRRLIEIAVSVAETE-DWRGGTRTGVGSGY  460
             LL+ L  L PR+YS+S    +            + + V V E E D  G    GV S +
Sbjct  168  FLLTQLPQLQPRYYSISSSSKVHPNE--------VHLTVVVVEYETDGEGRIHYGVCSNW  219



Lambda      K        H        a         alpha
   0.316    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 831781560


Query= TCONS_00030776

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395540 pfam00667, FAD_binding_1, FAD binding domain. This dom...  169     2e-49


>CDD:395540 pfam00667, FAD_binding_1, FAD binding domain.  This domain is 
found in sulfite reductase, NADPH cytochrome P450 reductase, 
Nitric oxide synthase and methionine synthase reductase.
Length=219

 Score = 169 bits (431),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 76/240 (32%), Positives = 112/240 (47%), Gaps = 22/240 (9%)

Query  222  PHPPYNVFRAPLHHARELTKPGAEKRTFHFDIDVTDYPAESGDVDFVVGGAIGVCPKNKE  281
            P      F AP+   RELT P +++   H ++D++        + +  G  +GV P N E
Sbjct  1    PFDAKKPFTAPVLSNRELTSPSSDRNCIHVELDISGS-----GLTYQTGDHLGVYPPNNE  55

Query  282  EEVDDIFNQLGIPKSIRDKKITLHTTKGRWPTIWGDDQPRDLITTRRELLTWCSDIQSYP  341
            E V+++  +LG+     D  + L T   R         PR   TT R+ L +  DI   P
Sbjct  56   ELVEELLERLGLDPK-PDTVVLLKTLDER------VKPPRLPPTTYRQALKYYLDITG-P  107

Query  342  PTKPLFRLLAEYATEPNEKKILMFLSSAQGQGAFCDLRTGSYITVSQLLHAFPSSQPPLD  401
            P+K L RLLA++A E  EK+ L FLSS  G   +   +     T+ ++L  FPS + P D
Sbjct  108  PSKQLLRLLAQFAPEEEEKQRLEFLSSDAGAREYKRWKLNHAPTLLEVLEEFPSVKLPAD  167

Query  402  HLLSVLNTLMPRFYSLSQDPLISCQRQDTKCRRLIEIAVSVAETE-DWRGGTRTGVGSGY  460
             LL+ L  L PR+YS+S    +            + + V V E E D  G    GV S +
Sbjct  168  FLLTQLPQLQPRYYSISSSSKVHPNE--------VHLTVVVVEYETDGEGRIHYGVCSNW  219



Lambda      K        H        a         alpha
   0.316    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 817033660


Query= TCONS_00035193

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395540 pfam00667, FAD_binding_1, FAD binding domain. This dom...  169     2e-49


>CDD:395540 pfam00667, FAD_binding_1, FAD binding domain.  This domain is 
found in sulfite reductase, NADPH cytochrome P450 reductase, 
Nitric oxide synthase and methionine synthase reductase.
Length=219

 Score = 169 bits (431),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 76/240 (32%), Positives = 112/240 (47%), Gaps = 22/240 (9%)

Query  222  PHPPYNVFRAPLHHARELTKPGAEKRTFHFDIDVTDYPAESGDVDFVVGGAIGVCPKNKE  281
            P      F AP+   RELT P +++   H ++D++        + +  G  +GV P N E
Sbjct  1    PFDAKKPFTAPVLSNRELTSPSSDRNCIHVELDISGS-----GLTYQTGDHLGVYPPNNE  55

Query  282  EEVDDIFNQLGIPKSIRDKKITLHTTKGRWPTIWGDDQPRDLITTRRELLTWCSDIQSYP  341
            E V+++  +LG+     D  + L T   R         PR   TT R+ L +  DI   P
Sbjct  56   ELVEELLERLGLDPK-PDTVVLLKTLDER------VKPPRLPPTTYRQALKYYLDITG-P  107

Query  342  PTKPLFRLLAEYATEPNEKKILMFLSSAQGQGAFCDLRTGSYITVSQLLHAFPSSQPPLD  401
            P+K L RLLA++A E  EK+ L FLSS  G   +   +     T+ ++L  FPS + P D
Sbjct  108  PSKQLLRLLAQFAPEEEEKQRLEFLSSDAGAREYKRWKLNHAPTLLEVLEEFPSVKLPAD  167

Query  402  HLLSVLNTLMPRFYSLSQDPLISCQRQDTKCRRLIEIAVSVAETE-DWRGGTRTGVGSGY  460
             LL+ L  L PR+YS+S    +            + + V V E E D  G    GV S +
Sbjct  168  FLLTQLPQLQPRYYSISSSSKVHPNE--------VHLTVVVVEYETDGEGRIHYGVCSNW  219



Lambda      K        H        a         alpha
   0.316    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 817033660


Query= TCONS_00030777

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00030779

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00030780

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00030781

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.123    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00030782

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00030783

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00030784

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00030785

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00030797

Length=337


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00030789

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00030786

Length=272


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00035194

Length=539


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 678301568


Query= TCONS_00030787

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00030788

Length=337


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00030801

Length=337


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00035195

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00030791

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00030790

Length=525


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00035197

Length=653


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 825882400


Query= TCONS_00035196

Length=570


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 714336584


Query= TCONS_00030792

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00030800

Length=570


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 714336584


Query= TCONS_00030793

Length=337


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00035198

Length=368


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00030794

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00035200

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00030795

Length=433


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 526060472


Query= TCONS_00035201

Length=570


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 714336584


Query= TCONS_00030796

Length=525


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00030799

Length=653


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 825882400


Query= TCONS_00030798

Length=299


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00035204

Length=525


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00035203

Length=621


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790552412


Query= TCONS_00035206

Length=704


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 901096690


Query= TCONS_00035205

Length=517


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00030802

Length=621


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0736    0.140     1.90     42.6     43.6 

Effective search space used: 790552412


Query= TCONS_00035207

Length=337


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391672020


Query= TCONS_00030803

Length=696


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 889298370


Query= TCONS_00030804

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family ...  373     3e-126


>CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31.  Glycosyl 
hydrolases are key enzymes of carbohydrate metabolism. 
Family 31 comprises of enzymes that are, or similar to, alpha- 
galactosidases.
Length=443

 Score = 373 bits (961),  Expect = 3e-126, Method: Composition-based stats.
 Identities = 118/255 (46%), Positives = 156/255 (61%), Gaps = 7/255 (3%)

Query  115  NSTHVDGVQEYDVHSLWGHQILNATYYGLRQVFTEKRPFIIGRSTFAGSGKWAGHWGGDN  174
            ++    GV+ YDVH+L+G  +  ATY GLR+    KRPF++ RS FAGS ++A HW GDN
Sbjct  195  DNDPGGGVEHYDVHNLYGLLMAKATYEGLREKRPNKRPFVLTRSGFAGSQRYAAHWSGDN  254

Query  175  NSKWGSMFLSISQGLSFSLFGIPMFGVDTCGFNGNTDEELCSRWMQLSAFFPFYRNHNVL  234
             S W  +  SI  GLS  L GIP +G D  GF   T  EL  RW QL AF PF+RNH+ +
Sbjct  255  TSTWEHLRFSIPGGLSLGLSGIPFWGADIGGFFNPTTPELYVRWYQLGAFSPFFRNHSSI  314

Query  235  AAIPQEPYRWAS-VAQASKAAMKIRYSLLPYFYTLFHQAHTTGSTVMRALAWEFPTDPSL  293
                +EP+ +   V +  + A+++RY LLPY YTLF++AH TG  VMR L  EFP DP+ 
Sbjct  315  DTRRREPWLFGEEVEEIIRKAIRLRYRLLPYLYTLFYEAHETGLPVMRPLFLEFPDDPNT  374

Query  294  AAVDTQFMVGPSIMVVPVLEPLADTVKGVFPGVGKGEVWYDWYTQTAVDAKPGVNATIPA  353
              +D QFM GPS++V PVLE  A +V    P    G  WYD++T    +   G    + A
Sbjct  375  FDIDDQFMFGPSLLVAPVLEEGATSVDVYLP----GGRWYDFWTGERYE--GGGTVPVTA  428

Query  354  PLGHIPVYVRGGSIL  368
            PL  IP++VRGGSI+
Sbjct  429  PLDRIPLFVRGGSII  443



Lambda      K        H        a         alpha
   0.317    0.131    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00030805

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family ...  373     3e-126


>CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31.  Glycosyl 
hydrolases are key enzymes of carbohydrate metabolism. 
Family 31 comprises of enzymes that are, or similar to, alpha- 
galactosidases.
Length=443

 Score = 373 bits (961),  Expect = 3e-126, Method: Composition-based stats.
 Identities = 118/255 (46%), Positives = 156/255 (61%), Gaps = 7/255 (3%)

Query  115  NSTHVDGVQEYDVHSLWGHQILNATYYGLRQVFTEKRPFIIGRSTFAGSGKWAGHWGGDN  174
            ++    GV+ YDVH+L+G  +  ATY GLR+    KRPF++ RS FAGS ++A HW GDN
Sbjct  195  DNDPGGGVEHYDVHNLYGLLMAKATYEGLREKRPNKRPFVLTRSGFAGSQRYAAHWSGDN  254

Query  175  NSKWGSMFLSISQGLSFSLFGIPMFGVDTCGFNGNTDEELCSRWMQLSAFFPFYRNHNVL  234
             S W  +  SI  GLS  L GIP +G D  GF   T  EL  RW QL AF PF+RNH+ +
Sbjct  255  TSTWEHLRFSIPGGLSLGLSGIPFWGADIGGFFNPTTPELYVRWYQLGAFSPFFRNHSSI  314

Query  235  AAIPQEPYRWAS-VAQASKAAMKIRYSLLPYFYTLFHQAHTTGSTVMRALAWEFPTDPSL  293
                +EP+ +   V +  + A+++RY LLPY YTLF++AH TG  VMR L  EFP DP+ 
Sbjct  315  DTRRREPWLFGEEVEEIIRKAIRLRYRLLPYLYTLFYEAHETGLPVMRPLFLEFPDDPNT  374

Query  294  AAVDTQFMVGPSIMVVPVLEPLADTVKGVFPGVGKGEVWYDWYTQTAVDAKPGVNATIPA  353
              +D QFM GPS++V PVLE  A +V    P    G  WYD++T    +   G    + A
Sbjct  375  FDIDDQFMFGPSLLVAPVLEEGATSVDVYLP----GGRWYDFWTGERYE--GGGTVPVTA  428

Query  354  PLGHIPVYVRGGSIL  368
            PL  IP++VRGGSI+
Sbjct  429  PLDRIPLFVRGGSII  443



Lambda      K        H        a         alpha
   0.317    0.131    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00030806

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395586 pfam00723, Glyco_hydro_15, Glycosyl hydrolases family ...  172     2e-50


>CDD:395586 pfam00723, Glyco_hydro_15, Glycosyl hydrolases family 15.  In 
higher organisms this family is represented by phosphorylase 
kinase subunits.
Length=417

 Score = 172 bits (437),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 68/173 (39%), Positives = 90/173 (52%), Gaps = 16/173 (9%)

Query  129  ALDGVLNNVGPNGAKATGASSGIIIASPSQSNPDYYYTWTRDAALTVKYLVGSFAADHDP  188
            ALD  L N+G       G  +G++IASPS S PDYYYTW RD+ALT+  L+G    D D 
Sbjct  3    ALDAYLRNIGTLKLLIYGPVTGLVIASPSTSLPDYYYTWVRDSALTILALLGLGYRDEDD  62

Query  189  A--------IQRIIEDYVESQAHLQTVSNPSGNLSSGGLGEPKLRVDGSAFHGS--WGRP  238
            A        + +++  Y+++    Q  S P G   SGGLGEP    DG    G+  WGR 
Sbjct  63   AFRYGLETSLAKLMRGYLQAMYRQQGKSEPFGERESGGLGEPGFNGDGPVRVGNDAWGRL  122

Query  239  QSDGPALRATTLISYANLMIDNGYFSTVESSIWPIIQNDLSYLTEFWNSSTFG  291
            Q DGPALRA  LI        NG    +  ++  +++N L Y+   WN   FG
Sbjct  123  QLDGPALRALALI----QYTANG--LVIIDTLDEVVKNLLDYVEAAWNEPDFG  169



Lambda      K        H        a         alpha
   0.318    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00030807

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.492    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00030808

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00030809

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  64.0    2e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 64.0 bits (156),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 62/169 (37%), Gaps = 17/169 (10%)

Query  168  VNVYFKYLFPIMPVVRKEGIQADCHQLERLSSRRY---AFLASLCAATHIQLKFDGAMGP  224
            ++++FK   P  P++ +     D  +L    S        LA L        +   A   
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALF-SESPTARSS  59

Query  225  PAFNTEAQSMMSGEELLAEAVRARKECDPVDEISIESL--LTSFFLFACYG-NLDKQEQA  281
             +   EA       + +   +RA             SL  L +  L   Y      ++  
Sbjct  60   SSLTDEAA------DGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  282  WFYLCQATSMIFTLGLHRDVAYSEF----SPEEAEERRRVFWLLFITER  326
            W Y   A  +  +LGLHRD +Y         EEAE RRR+FW  F  +R
Sbjct  114  WRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDR  162



Lambda      K        H        a         alpha
   0.322    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00030810

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  64.0    2e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 64.0 bits (156),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 62/169 (37%), Gaps = 17/169 (10%)

Query  168  VNVYFKYLFPIMPVVRKEGIQADCHQLERLSSRRY---AFLASLCAATHIQLKFDGAMGP  224
            ++++FK   P  P++ +     D  +L    S        LA L        +   A   
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALF-SESPTARSS  59

Query  225  PAFNTEAQSMMSGEELLAEAVRARKECDPVDEISIESL--LTSFFLFACYG-NLDKQEQA  281
             +   EA       + +   +RA             SL  L +  L   Y      ++  
Sbjct  60   SSLTDEAA------DGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  282  WFYLCQATSMIFTLGLHRDVAYSEF----SPEEAEERRRVFWLLFITER  326
            W Y   A  +  +LGLHRD +Y         EEAE RRR+FW  F  +R
Sbjct  114  WRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDR  162



Lambda      K        H        a         alpha
   0.322    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00030811

Length=622
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  66.0    2e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 66.0 bits (161),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 48/195 (25%), Positives = 74/195 (38%), Gaps = 17/195 (9%)

Query  168  VNVYFKYLFPIMPVVRKEGIQADCHQLERLSSRRY---AFLASLCAATHIQLKFDGAMGP  224
            ++++FK   P  P++ +     D  +L    S        LA L        +   A   
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALF-SESPTARSS  59

Query  225  PAFNTEAQSMMSGEELLAEAVRARKECDPVDEISIESL--LTSFFLFACYG-NLDKQEQA  281
             +   EA       + +   +RA             SL  L +  L   Y      ++  
Sbjct  60   SSLTDEAA------DGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  282  WFYLCQATSMIFTLGLHRDVAYSEF----SPEEAEERRRVFWLLFITERGYALQQAKPVM  337
            W Y   A  +  +LGLHRD +Y         EEAE RRR+FW  F  +R  +L   +P +
Sbjct  114  WRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPL  173

Query  338  LRNSIHKPQVLCSDD  352
            L +S     + C DD
Sbjct  174  LSDSDIDLPLPCDDD  188



Lambda      K        H        a         alpha
   0.320    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 792046840


Query= TCONS_00035208

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  63.7    4e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 63.7 bits (155),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 42/185 (23%), Positives = 64/185 (35%), Gaps = 18/185 (10%)

Query  168  VNVYFKYLFPIMPVVRKEGIQADCHQLERLSSRRY---AFLASLCAATHIQLKFDGAMGP  224
            ++++FK   P  P++ +     D  +L    S        LA L        +   A   
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALF-SESPTARSS  59

Query  225  PAFNTEAQSMMSGEELLAEAVRARKECDPVDEISIESL--LTSFFLFACYG-NLDKQEQA  281
             +   EA       + +   +RA             SL  L +  L   Y      ++  
Sbjct  60   SSLTDEAA------DGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  282  WFYLCQATSMIFTLGLHRDVAYSEF----SPEEAEERRRVFWLLFITESRRNRSCYATPS  337
            W Y   A  +  +LGLHRD +Y         EEAE RRR+FW  F  + R        P 
Sbjct  114  WRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLD-RLISLILGRPP  172

Query  338  INRKF  342
            +    
Sbjct  173  LLSDS  177



Lambda      K        H        a         alpha
   0.322    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00035209

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain. This regio...  68.5    2e-15
CDD:435703 pfam17004, SRP_TPR_like, Putative TPR-like repeat. Thi...  68.6    1e-14


>CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain.  This region has 
been identified as the binding site of the SRP72 protein to 
SRP RNA.
Length=53

 Score = 68.5 bits (168),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 0/42 (0%)

Query  554  KRTAAESQTRATKRIRKSRLPKDYDPNKAPDPERWLPLRDRS  595
             +   + + +  KR RK +LPK++DP   PDPERWLPLR+RS
Sbjct  12   PKEEVQKKKKKKKRKRKGKLPKNFDPGVTPDPERWLPLRERS  53


>CDD:435703 pfam17004, SRP_TPR_like, Putative TPR-like repeat.  This is a 
family of microsporidial sequences that are likely to fold 
into a TPR-like structure. Many sequences are annotated as being 
signal recognition proteins.
Length=109

 Score = 68.6 bits (168),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 26/133 (20%)

Query  16   DDHEEMLSSANAALAKSKSDINAQLVKVVALLKLDRYEDCLRVFEESGDALKKKAALEYA  75
            ++HEE+L        + K         V+AL+ LD+Y++ L+          KK + E A
Sbjct  3    EEHEEILRLEGPEYNRFK---------VIALIHLDKYKEALK--------YAKKGSFEKA  45

Query  76   YALYKHGQPDEAINVVSRLARGRGAKHLEAQASYRAEKFRRTAELYEELAKDKASIGNEE  135
            YALYK  +  +A+ ++ ++    G++ L +Q  Y    +    + Y+ L++ K      +
Sbjct  46   YALYKLKKYKKALKILRKMD-SEGSRVLASQCLYFLGYYN---KAYKILSECK-----RD  96

Query  136  NDLRINSWAADAQ  148
            +++ +N  A  + 
Sbjct  97   DEIVVNLQAMKSL  109



Lambda      K        H        a         alpha
   0.312    0.127    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 817033660


Query= TCONS_00030812

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain. This regio...  68.5    2e-15
CDD:435703 pfam17004, SRP_TPR_like, Putative TPR-like repeat. Thi...  68.6    1e-14


>CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain.  This region has 
been identified as the binding site of the SRP72 protein to 
SRP RNA.
Length=53

 Score = 68.5 bits (168),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 0/42 (0%)

Query  554  KRTAAESQTRATKRIRKSRLPKDYDPNKAPDPERWLPLRDRS  595
             +   + + +  KR RK +LPK++DP   PDPERWLPLR+RS
Sbjct  12   PKEEVQKKKKKKKRKRKGKLPKNFDPGVTPDPERWLPLRERS  53


>CDD:435703 pfam17004, SRP_TPR_like, Putative TPR-like repeat.  This is a 
family of microsporidial sequences that are likely to fold 
into a TPR-like structure. Many sequences are annotated as being 
signal recognition proteins.
Length=109

 Score = 68.6 bits (168),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 26/133 (20%)

Query  16   DDHEEMLSSANAALAKSKSDINAQLVKVVALLKLDRYEDCLRVFEESGDALKKKAALEYA  75
            ++HEE+L        + K         V+AL+ LD+Y++ L+          KK + E A
Sbjct  3    EEHEEILRLEGPEYNRFK---------VIALIHLDKYKEALK--------YAKKGSFEKA  45

Query  76   YALYKHGQPDEAINVVSRLARGRGAKHLEAQASYRAEKFRRTAELYEELAKDKASIGNEE  135
            YALYK  +  +A+ ++ ++    G++ L +Q  Y    +    + Y+ L++ K      +
Sbjct  46   YALYKLKKYKKALKILRKMD-SEGSRVLASQCLYFLGYYN---KAYKILSECK-----RD  96

Query  136  NDLRINSWAADAQ  148
            +++ +N  A  + 
Sbjct  97   DEIVVNLQAMKSL  109



Lambda      K        H        a         alpha
   0.312    0.127    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 817033660


Query= TCONS_00030813

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain. This regio...  68.5    2e-15
CDD:435703 pfam17004, SRP_TPR_like, Putative TPR-like repeat. Thi...  68.6    1e-14


>CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain.  This region has 
been identified as the binding site of the SRP72 protein to 
SRP RNA.
Length=53

 Score = 68.5 bits (168),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 0/42 (0%)

Query  554  KRTAAESQTRATKRIRKSRLPKDYDPNKAPDPERWLPLRDRS  595
             +   + + +  KR RK +LPK++DP   PDPERWLPLR+RS
Sbjct  12   PKEEVQKKKKKKKRKRKGKLPKNFDPGVTPDPERWLPLRERS  53


>CDD:435703 pfam17004, SRP_TPR_like, Putative TPR-like repeat.  This is a 
family of microsporidial sequences that are likely to fold 
into a TPR-like structure. Many sequences are annotated as being 
signal recognition proteins.
Length=109

 Score = 68.6 bits (168),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 26/133 (20%)

Query  16   DDHEEMLSSANAALAKSKSDINAQLVKVVALLKLDRYEDCLRVFEESGDALKKKAALEYA  75
            ++HEE+L        + K         V+AL+ LD+Y++ L+          KK + E A
Sbjct  3    EEHEEILRLEGPEYNRFK---------VIALIHLDKYKEALK--------YAKKGSFEKA  45

Query  76   YALYKHGQPDEAINVVSRLARGRGAKHLEAQASYRAEKFRRTAELYEELAKDKASIGNEE  135
            YALYK  +  +A+ ++ ++    G++ L +Q  Y    +    + Y+ L++ K      +
Sbjct  46   YALYKLKKYKKALKILRKMD-SEGSRVLASQCLYFLGYYN---KAYKILSECK-----RD  96

Query  136  NDLRINSWAADAQ  148
            +++ +N  A  + 
Sbjct  97   DEIVVNLQAMKSL  109



Lambda      K        H        a         alpha
   0.312    0.127    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 817033660


Query= TCONS_00030814

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain. This regio...  68.5    2e-15


>CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain.  This region has 
been identified as the binding site of the SRP72 protein to 
SRP RNA.
Length=53

 Score = 68.5 bits (168),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 0/42 (0%)

Query  327  KRTAAESQTRATKRIRKSRLPKDYDPNKAPDPERWLPLRDRS  368
             +   + + +  KR RK +LPK++DP   PDPERWLPLR+RS
Sbjct  12   PKEEVQKKKKKKKRKRKGKLPKNFDPGVTPDPERWLPLRERS  53



Lambda      K        H        a         alpha
   0.312    0.126    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00035210

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain. This regio...  68.5    2e-15
CDD:435703 pfam17004, SRP_TPR_like, Putative TPR-like repeat. Thi...  68.6    1e-14


>CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain.  This region has 
been identified as the binding site of the SRP72 protein to 
SRP RNA.
Length=53

 Score = 68.5 bits (168),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 0/42 (0%)

Query  554  KRTAAESQTRATKRIRKSRLPKDYDPNKAPDPERWLPLRDRS  595
             +   + + +  KR RK +LPK++DP   PDPERWLPLR+RS
Sbjct  12   PKEEVQKKKKKKKRKRKGKLPKNFDPGVTPDPERWLPLRERS  53


>CDD:435703 pfam17004, SRP_TPR_like, Putative TPR-like repeat.  This is a 
family of microsporidial sequences that are likely to fold 
into a TPR-like structure. Many sequences are annotated as being 
signal recognition proteins.
Length=109

 Score = 68.6 bits (168),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 26/133 (20%)

Query  16   DDHEEMLSSANAALAKSKSDINAQLVKVVALLKLDRYEDCLRVFEESGDALKKKAALEYA  75
            ++HEE+L        + K         V+AL+ LD+Y++ L+          KK + E A
Sbjct  3    EEHEEILRLEGPEYNRFK---------VIALIHLDKYKEALK--------YAKKGSFEKA  45

Query  76   YALYKHGQPDEAINVVSRLARGRGAKHLEAQASYRAEKFRRTAELYEELAKDKASIGNEE  135
            YALYK  +  +A+ ++ ++    G++ L +Q  Y    +    + Y+ L++ K      +
Sbjct  46   YALYKLKKYKKALKILRKMD-SEGSRVLASQCLYFLGYYN---KAYKILSECK-----RD  96

Query  136  NDLRINSWAADAQ  148
            +++ +N  A  + 
Sbjct  97   DEIVVNLQAMKSL  109



Lambda      K        H        a         alpha
   0.312    0.127    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 817033660


Query= TCONS_00035211

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain. This regio...  68.5    2e-15
CDD:435703 pfam17004, SRP_TPR_like, Putative TPR-like repeat. Thi...  68.6    1e-14


>CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain.  This region has 
been identified as the binding site of the SRP72 protein to 
SRP RNA.
Length=53

 Score = 68.5 bits (168),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 0/42 (0%)

Query  554  KRTAAESQTRATKRIRKSRLPKDYDPNKAPDPERWLPLRDRS  595
             +   + + +  KR RK +LPK++DP   PDPERWLPLR+RS
Sbjct  12   PKEEVQKKKKKKKRKRKGKLPKNFDPGVTPDPERWLPLRERS  53


>CDD:435703 pfam17004, SRP_TPR_like, Putative TPR-like repeat.  This is a 
family of microsporidial sequences that are likely to fold 
into a TPR-like structure. Many sequences are annotated as being 
signal recognition proteins.
Length=109

 Score = 68.6 bits (168),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 26/133 (20%)

Query  16   DDHEEMLSSANAALAKSKSDINAQLVKVVALLKLDRYEDCLRVFEESGDALKKKAALEYA  75
            ++HEE+L        + K         V+AL+ LD+Y++ L+          KK + E A
Sbjct  3    EEHEEILRLEGPEYNRFK---------VIALIHLDKYKEALK--------YAKKGSFEKA  45

Query  76   YALYKHGQPDEAINVVSRLARGRGAKHLEAQASYRAEKFRRTAELYEELAKDKASIGNEE  135
            YALYK  +  +A+ ++ ++    G++ L +Q  Y    +    + Y+ L++ K      +
Sbjct  46   YALYKLKKYKKALKILRKMD-SEGSRVLASQCLYFLGYYN---KAYKILSECK-----RD  96

Query  136  NDLRINSWAADAQ  148
            +++ +N  A  + 
Sbjct  97   DEIVVNLQAMKSL  109



Lambda      K        H        a         alpha
   0.312    0.127    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 817033660


Query= TCONS_00030815

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain. This regio...  68.5    2e-15
CDD:435703 pfam17004, SRP_TPR_like, Putative TPR-like repeat. Thi...  68.6    1e-14


>CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain.  This region has 
been identified as the binding site of the SRP72 protein to 
SRP RNA.
Length=53

 Score = 68.5 bits (168),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 0/42 (0%)

Query  554  KRTAAESQTRATKRIRKSRLPKDYDPNKAPDPERWLPLRDRS  595
             +   + + +  KR RK +LPK++DP   PDPERWLPLR+RS
Sbjct  12   PKEEVQKKKKKKKRKRKGKLPKNFDPGVTPDPERWLPLRERS  53


>CDD:435703 pfam17004, SRP_TPR_like, Putative TPR-like repeat.  This is a 
family of microsporidial sequences that are likely to fold 
into a TPR-like structure. Many sequences are annotated as being 
signal recognition proteins.
Length=109

 Score = 68.6 bits (168),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 26/133 (20%)

Query  16   DDHEEMLSSANAALAKSKSDINAQLVKVVALLKLDRYEDCLRVFEESGDALKKKAALEYA  75
            ++HEE+L        + K         V+AL+ LD+Y++ L+          KK + E A
Sbjct  3    EEHEEILRLEGPEYNRFK---------VIALIHLDKYKEALK--------YAKKGSFEKA  45

Query  76   YALYKHGQPDEAINVVSRLARGRGAKHLEAQASYRAEKFRRTAELYEELAKDKASIGNEE  135
            YALYK  +  +A+ ++ ++    G++ L +Q  Y    +    + Y+ L++ K      +
Sbjct  46   YALYKLKKYKKALKILRKMD-SEGSRVLASQCLYFLGYYN---KAYKILSECK-----RD  96

Query  136  NDLRINSWAADAQ  148
            +++ +N  A  + 
Sbjct  97   DEIVVNLQAMKSL  109



Lambda      K        H        a         alpha
   0.312    0.127    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 817033660


Query= TCONS_00035212

Length=647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain. This regio...  68.5    2e-15
CDD:435703 pfam17004, SRP_TPR_like, Putative TPR-like repeat. Thi...  68.6    1e-14


>CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain.  This region has 
been identified as the binding site of the SRP72 protein to 
SRP RNA.
Length=53

 Score = 68.5 bits (168),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 0/42 (0%)

Query  554  KRTAAESQTRATKRIRKSRLPKDYDPNKAPDPERWLPLRDRS  595
             +   + + +  KR RK +LPK++DP   PDPERWLPLR+RS
Sbjct  12   PKEEVQKKKKKKKRKRKGKLPKNFDPGVTPDPERWLPLRERS  53


>CDD:435703 pfam17004, SRP_TPR_like, Putative TPR-like repeat.  This is a 
family of microsporidial sequences that are likely to fold 
into a TPR-like structure. Many sequences are annotated as being 
signal recognition proteins.
Length=109

 Score = 68.6 bits (168),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 26/133 (20%)

Query  16   DDHEEMLSSANAALAKSKSDINAQLVKVVALLKLDRYEDCLRVFEESGDALKKKAALEYA  75
            ++HEE+L        + K         V+AL+ LD+Y++ L+          KK + E A
Sbjct  3    EEHEEILRLEGPEYNRFK---------VIALIHLDKYKEALK--------YAKKGSFEKA  45

Query  76   YALYKHGQPDEAINVVSRLARGRGAKHLEAQASYRAEKFRRTAELYEELAKDKASIGNEE  135
            YALYK  +  +A+ ++ ++    G++ L +Q  Y    +    + Y+ L++ K      +
Sbjct  46   YALYKLKKYKKALKILRKMD-SEGSRVLASQCLYFLGYYN---KAYKILSECK-----RD  96

Query  136  NDLRINSWAADAQ  148
            +++ +N  A  + 
Sbjct  97   DEIVVNLQAMKSL  109



Lambda      K        H        a         alpha
   0.312    0.127    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 817033660


Query= TCONS_00030816

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain. This regio...  67.4    4e-15


>CDD:462494 pfam08492, SRP72, SRP72 RNA-binding domain.  This region has 
been identified as the binding site of the SRP72 protein to 
SRP RNA.
Length=53

 Score = 67.4 bits (165),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 0/42 (0%)

Query  363  KRTAAESQTRATKRIRKSRLPKDYDPNKAPDPERWLPLRDRS  404
             +   + + +  KR RK +LPK++DP   PDPERWLPLR+RS
Sbjct  12   PKEEVQKKKKKKKRKRKGKLPKNFDPGVTPDPERWLPLRERS  53



Lambda      K        H        a         alpha
   0.312    0.127    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00030818

Length=511


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 635907720


Query= TCONS_00030817

Length=512


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 637421786


Query= TCONS_00030819

Length=675


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 858327780


Query= TCONS_00035214

Length=405


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00035215

Length=581


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00030820

Length=470


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00035216

Length=496


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00030821

Length=499


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 617738928


Query= TCONS_00030823

Length=1675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating...  312     1e-97
CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating...  96.4    2e-24
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  70.7    3e-15


>CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating P-type 
ATPase C-terminal.  PhoLip_ATPase_C is found at the C-terminus 
of a number of phospholipid-translocating ATPases. It is 
found in higher eukaryotes.
Length=250

 Score = 312 bits (803),  Expect = 1e-97, Method: Composition-based stats.
 Identities = 99/229 (43%), Positives = 145/229 (63%), Gaps = 7/229 (3%)

Query  1295  ARISDYSIAQFRFLLKLLLVHGRWNYIRACKYTLGTFWKEMLFYLTQALYQRWNGYTGTS  1354
             AR SDY+IAQFRFL +LLLVHGRW+Y R  K  L  F+K ++F LTQ  YQ +NG++G S
Sbjct  1     ARASDYAIAQFRFLKRLLLVHGRWSYRRTSKLILYFFYKNIVFTLTQFWYQFYNGFSGQS  60

Query  1355  LYEPWSLSMFNTLFTSLAVIFLGIFTKDLSASTLLAVPELYTKGQRHGGFNIRIYLGWTF  1414
             LYE W L+++N LFTSL VI LGIF +D+SA TLLA PELY  GQ++  FN++ +LGW  
Sbjct  61    LYESWYLTLYNLLFTSLPVIVLGIFDQDVSAETLLAYPELYKLGQKNKFFNLKTFLGWML  120

Query  1415  MATCEAMIVFFVMYGLFGNVLFTNTG-SDIFSAGLVTYSACVIIINTKLQALEVHNKTYL  1473
                 +++I+FF+ Y  +G+ +F+    +D+++ G   ++A V+++N KL ALE H  T++
Sbjct  121   DGIYQSLIIFFIPYLAYGDSVFSGGKDADLWAFGTTVFTALVLVVNLKL-ALETHYWTWI  179

Query  1474  SLIVIVISVGGWFLWNLILSRRYQIESGDGIYHVPCNFILQSGRDLAFW  1522
             + + I  S+  +FL+ LI S  Y                 +     +FW
Sbjct  180   THLAIWGSILLYFLFTLIYSSIYPSSYSVFYG-----VASRLFGSPSFW  223


>CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating ATPase 
N-terminal.  PhoLip_ATPase_N is found at the N-terminus of 
a number of phospholipid-translocating ATPases. It is found 
in higher eukaryotes.
Length=67

 Score = 96.4 bits (241),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 28/61 (46%), Positives = 44/61 (72%), Gaps = 0/61 (0%)

Query  300  DERTGKPYVGNWIRSSRYSFWSFFPRQLFAQFTKLANFYFLVVAILQMIPGLSTTGTFTT  359
            ++ +   Y  N I +S+Y+  +F P+ LF QF ++AN YFL++AILQ+IPG+S TG +TT
Sbjct  7    EKNSEFKYPSNKISTSKYTLLTFLPKNLFEQFRRVANLYFLLIAILQLIPGISPTGPYTT  66

Query  360  L  360
            +
Sbjct  67   I  67


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 70.7 bits (174),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 48/111 (43%), Gaps = 23/111 (21%)

Query  805  ALCHTCIPEKNESGSVSFQAASPDELALVMAAQDLGYLVIDRQPNTLTIRTYPNGPEEEH  864
            ALC++   ++NE          P E AL++ A+ +G  V + + +               
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEKMGIDVEELRKD---------------  45

Query  865  QDEVYEILDVIEFTSTRKRMSVVVRMPDH-RICLFCKGADSTLMRLLKRSS  914
                Y  +  I F S RKRMS V ++PD  +  LF KGA      +L R +
Sbjct  46   ----YPRVAEIPFNSDRKRMSTVHKLPDDGKYRLFVKGAPE---IILDRCT  89



Lambda      K        H        a         alpha
   0.318    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2106285300


Query= TCONS_00035218

Length=1532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating...  309     8e-97
CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating...  95.6    3e-24
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  70.7    3e-15


>CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating P-type 
ATPase C-terminal.  PhoLip_ATPase_C is found at the C-terminus 
of a number of phospholipid-translocating ATPases. It is 
found in higher eukaryotes.
Length=250

 Score = 309 bits (795),  Expect = 8e-97, Method: Composition-based stats.
 Identities = 99/229 (43%), Positives = 145/229 (63%), Gaps = 7/229 (3%)

Query  1152  ARISDYSIAQFRFLLKLLLVHGRWNYIRACKYTLGTFWKEMLFYLTQALYQRWNGYTGTS  1211
             AR SDY+IAQFRFL +LLLVHGRW+Y R  K  L  F+K ++F LTQ  YQ +NG++G S
Sbjct  1     ARASDYAIAQFRFLKRLLLVHGRWSYRRTSKLILYFFYKNIVFTLTQFWYQFYNGFSGQS  60

Query  1212  LYEPWSLSMFNTLFTSLAVIFLGIFTKDLSASTLLAVPELYTKGQRHGGFNIRIYLGWTF  1271
             LYE W L+++N LFTSL VI LGIF +D+SA TLLA PELY  GQ++  FN++ +LGW  
Sbjct  61    LYESWYLTLYNLLFTSLPVIVLGIFDQDVSAETLLAYPELYKLGQKNKFFNLKTFLGWML  120

Query  1272  MATCEAMIVFFVMYGLFGNVLFTNTG-SDIFSAGLVTYSACVIIINTKLQALEVHNKTYL  1330
                 +++I+FF+ Y  +G+ +F+    +D+++ G   ++A V+++N KL ALE H  T++
Sbjct  121   DGIYQSLIIFFIPYLAYGDSVFSGGKDADLWAFGTTVFTALVLVVNLKL-ALETHYWTWI  179

Query  1331  SLIVIVISVGGWFLWNLILSRRYQIESGDGIYHVPCNFILQSGRDLAFW  1379
             + + I  S+  +FL+ LI S  Y                 +     +FW
Sbjct  180   THLAIWGSILLYFLFTLIYSSIYPSSYSVFYG-----VASRLFGSPSFW  223


>CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating ATPase 
N-terminal.  PhoLip_ATPase_N is found at the N-terminus of 
a number of phospholipid-translocating ATPases. It is found 
in higher eukaryotes.
Length=67

 Score = 95.6 bits (239),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 28/61 (46%), Positives = 44/61 (72%), Gaps = 0/61 (0%)

Query  300  DERTGKPYVGNWIRSSRYSFWSFFPRQLFAQFTKLANFYFLVVAILQMIPGLSTTGTFTT  359
            ++ +   Y  N I +S+Y+  +F P+ LF QF ++AN YFL++AILQ+IPG+S TG +TT
Sbjct  7    EKNSEFKYPSNKISTSKYTLLTFLPKNLFEQFRRVANLYFLLIAILQLIPGISPTGPYTT  66

Query  360  L  360
            +
Sbjct  67   I  67


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 70.7 bits (174),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 48/111 (43%), Gaps = 23/111 (21%)

Query  805  ALCHTCIPEKNESGSVSFQAASPDELALVMAAQDLGYLVIDRQPNTLTIRTYPNGPEEEH  864
            ALC++   ++NE          P E AL++ A+ +G  V + + +               
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEKMGIDVEELRKD---------------  45

Query  865  QDEVYEILDVIEFTSTRKRMSVVVRMPDH-RICLFCKGADSTLMRLLKRSS  914
                Y  +  I F S RKRMS V ++PD  +  LF KGA      +L R +
Sbjct  46   ----YPRVAEIPFNSDRKRMSTVHKLPDDGKYRLFVKGAPE---IILDRCT  89



Lambda      K        H        a         alpha
   0.319    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1944526546


Query= TCONS_00035217

Length=1675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating...  312     1e-97
CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating...  96.4    2e-24
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  70.7    3e-15


>CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating P-type 
ATPase C-terminal.  PhoLip_ATPase_C is found at the C-terminus 
of a number of phospholipid-translocating ATPases. It is 
found in higher eukaryotes.
Length=250

 Score = 312 bits (803),  Expect = 1e-97, Method: Composition-based stats.
 Identities = 99/229 (43%), Positives = 145/229 (63%), Gaps = 7/229 (3%)

Query  1295  ARISDYSIAQFRFLLKLLLVHGRWNYIRACKYTLGTFWKEMLFYLTQALYQRWNGYTGTS  1354
             AR SDY+IAQFRFL +LLLVHGRW+Y R  K  L  F+K ++F LTQ  YQ +NG++G S
Sbjct  1     ARASDYAIAQFRFLKRLLLVHGRWSYRRTSKLILYFFYKNIVFTLTQFWYQFYNGFSGQS  60

Query  1355  LYEPWSLSMFNTLFTSLAVIFLGIFTKDLSASTLLAVPELYTKGQRHGGFNIRIYLGWTF  1414
             LYE W L+++N LFTSL VI LGIF +D+SA TLLA PELY  GQ++  FN++ +LGW  
Sbjct  61    LYESWYLTLYNLLFTSLPVIVLGIFDQDVSAETLLAYPELYKLGQKNKFFNLKTFLGWML  120

Query  1415  MATCEAMIVFFVMYGLFGNVLFTNTG-SDIFSAGLVTYSACVIIINTKLQALEVHNKTYL  1473
                 +++I+FF+ Y  +G+ +F+    +D+++ G   ++A V+++N KL ALE H  T++
Sbjct  121   DGIYQSLIIFFIPYLAYGDSVFSGGKDADLWAFGTTVFTALVLVVNLKL-ALETHYWTWI  179

Query  1474  SLIVIVISVGGWFLWNLILSRRYQIESGDGIYHVPCNFILQSGRDLAFW  1522
             + + I  S+  +FL+ LI S  Y                 +     +FW
Sbjct  180   THLAIWGSILLYFLFTLIYSSIYPSSYSVFYG-----VASRLFGSPSFW  223


>CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating ATPase 
N-terminal.  PhoLip_ATPase_N is found at the N-terminus of 
a number of phospholipid-translocating ATPases. It is found 
in higher eukaryotes.
Length=67

 Score = 96.4 bits (241),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 28/61 (46%), Positives = 44/61 (72%), Gaps = 0/61 (0%)

Query  300  DERTGKPYVGNWIRSSRYSFWSFFPRQLFAQFTKLANFYFLVVAILQMIPGLSTTGTFTT  359
            ++ +   Y  N I +S+Y+  +F P+ LF QF ++AN YFL++AILQ+IPG+S TG +TT
Sbjct  7    EKNSEFKYPSNKISTSKYTLLTFLPKNLFEQFRRVANLYFLLIAILQLIPGISPTGPYTT  66

Query  360  L  360
            +
Sbjct  67   I  67


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 70.7 bits (174),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 48/111 (43%), Gaps = 23/111 (21%)

Query  805  ALCHTCIPEKNESGSVSFQAASPDELALVMAAQDLGYLVIDRQPNTLTIRTYPNGPEEEH  864
            ALC++   ++NE          P E AL++ A+ +G  V + + +               
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEKMGIDVEELRKD---------------  45

Query  865  QDEVYEILDVIEFTSTRKRMSVVVRMPDH-RICLFCKGADSTLMRLLKRSS  914
                Y  +  I F S RKRMS V ++PD  +  LF KGA      +L R +
Sbjct  46   ----YPRVAEIPFNSDRKRMSTVHKLPDDGKYRLFVKGAPE---IILDRCT  89



Lambda      K        H        a         alpha
   0.318    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2106285300


Query= TCONS_00030824

Length=1532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating...  309     8e-97
CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating...  95.6    3e-24
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  70.7    3e-15


>CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating P-type 
ATPase C-terminal.  PhoLip_ATPase_C is found at the C-terminus 
of a number of phospholipid-translocating ATPases. It is 
found in higher eukaryotes.
Length=250

 Score = 309 bits (795),  Expect = 8e-97, Method: Composition-based stats.
 Identities = 99/229 (43%), Positives = 145/229 (63%), Gaps = 7/229 (3%)

Query  1152  ARISDYSIAQFRFLLKLLLVHGRWNYIRACKYTLGTFWKEMLFYLTQALYQRWNGYTGTS  1211
             AR SDY+IAQFRFL +LLLVHGRW+Y R  K  L  F+K ++F LTQ  YQ +NG++G S
Sbjct  1     ARASDYAIAQFRFLKRLLLVHGRWSYRRTSKLILYFFYKNIVFTLTQFWYQFYNGFSGQS  60

Query  1212  LYEPWSLSMFNTLFTSLAVIFLGIFTKDLSASTLLAVPELYTKGQRHGGFNIRIYLGWTF  1271
             LYE W L+++N LFTSL VI LGIF +D+SA TLLA PELY  GQ++  FN++ +LGW  
Sbjct  61    LYESWYLTLYNLLFTSLPVIVLGIFDQDVSAETLLAYPELYKLGQKNKFFNLKTFLGWML  120

Query  1272  MATCEAMIVFFVMYGLFGNVLFTNTG-SDIFSAGLVTYSACVIIINTKLQALEVHNKTYL  1330
                 +++I+FF+ Y  +G+ +F+    +D+++ G   ++A V+++N KL ALE H  T++
Sbjct  121   DGIYQSLIIFFIPYLAYGDSVFSGGKDADLWAFGTTVFTALVLVVNLKL-ALETHYWTWI  179

Query  1331  SLIVIVISVGGWFLWNLILSRRYQIESGDGIYHVPCNFILQSGRDLAFW  1379
             + + I  S+  +FL+ LI S  Y                 +     +FW
Sbjct  180   THLAIWGSILLYFLFTLIYSSIYPSSYSVFYG-----VASRLFGSPSFW  223


>CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating ATPase 
N-terminal.  PhoLip_ATPase_N is found at the N-terminus of 
a number of phospholipid-translocating ATPases. It is found 
in higher eukaryotes.
Length=67

 Score = 95.6 bits (239),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 28/61 (46%), Positives = 44/61 (72%), Gaps = 0/61 (0%)

Query  300  DERTGKPYVGNWIRSSRYSFWSFFPRQLFAQFTKLANFYFLVVAILQMIPGLSTTGTFTT  359
            ++ +   Y  N I +S+Y+  +F P+ LF QF ++AN YFL++AILQ+IPG+S TG +TT
Sbjct  7    EKNSEFKYPSNKISTSKYTLLTFLPKNLFEQFRRVANLYFLLIAILQLIPGISPTGPYTT  66

Query  360  L  360
            +
Sbjct  67   I  67


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 70.7 bits (174),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 48/111 (43%), Gaps = 23/111 (21%)

Query  805  ALCHTCIPEKNESGSVSFQAASPDELALVMAAQDLGYLVIDRQPNTLTIRTYPNGPEEEH  864
            ALC++   ++NE          P E AL++ A+ +G  V + + +               
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEKMGIDVEELRKD---------------  45

Query  865  QDEVYEILDVIEFTSTRKRMSVVVRMPDH-RICLFCKGADSTLMRLLKRSS  914
                Y  +  I F S RKRMS V ++PD  +  LF KGA      +L R +
Sbjct  46   ----YPRVAEIPFNSDRKRMSTVHKLPDDGKYRLFVKGAPE---IILDRCT  89



Lambda      K        H        a         alpha
   0.319    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1944526546


Query= TCONS_00030825

Length=1675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating...  312     1e-97
CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating...  96.4    2e-24
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  70.7    3e-15


>CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating P-type 
ATPase C-terminal.  PhoLip_ATPase_C is found at the C-terminus 
of a number of phospholipid-translocating ATPases. It is 
found in higher eukaryotes.
Length=250

 Score = 312 bits (803),  Expect = 1e-97, Method: Composition-based stats.
 Identities = 99/229 (43%), Positives = 145/229 (63%), Gaps = 7/229 (3%)

Query  1295  ARISDYSIAQFRFLLKLLLVHGRWNYIRACKYTLGTFWKEMLFYLTQALYQRWNGYTGTS  1354
             AR SDY+IAQFRFL +LLLVHGRW+Y R  K  L  F+K ++F LTQ  YQ +NG++G S
Sbjct  1     ARASDYAIAQFRFLKRLLLVHGRWSYRRTSKLILYFFYKNIVFTLTQFWYQFYNGFSGQS  60

Query  1355  LYEPWSLSMFNTLFTSLAVIFLGIFTKDLSASTLLAVPELYTKGQRHGGFNIRIYLGWTF  1414
             LYE W L+++N LFTSL VI LGIF +D+SA TLLA PELY  GQ++  FN++ +LGW  
Sbjct  61    LYESWYLTLYNLLFTSLPVIVLGIFDQDVSAETLLAYPELYKLGQKNKFFNLKTFLGWML  120

Query  1415  MATCEAMIVFFVMYGLFGNVLFTNTG-SDIFSAGLVTYSACVIIINTKLQALEVHNKTYL  1473
                 +++I+FF+ Y  +G+ +F+    +D+++ G   ++A V+++N KL ALE H  T++
Sbjct  121   DGIYQSLIIFFIPYLAYGDSVFSGGKDADLWAFGTTVFTALVLVVNLKL-ALETHYWTWI  179

Query  1474  SLIVIVISVGGWFLWNLILSRRYQIESGDGIYHVPCNFILQSGRDLAFW  1522
             + + I  S+  +FL+ LI S  Y                 +     +FW
Sbjct  180   THLAIWGSILLYFLFTLIYSSIYPSSYSVFYG-----VASRLFGSPSFW  223


>CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating ATPase 
N-terminal.  PhoLip_ATPase_N is found at the N-terminus of 
a number of phospholipid-translocating ATPases. It is found 
in higher eukaryotes.
Length=67

 Score = 96.4 bits (241),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 28/61 (46%), Positives = 44/61 (72%), Gaps = 0/61 (0%)

Query  300  DERTGKPYVGNWIRSSRYSFWSFFPRQLFAQFTKLANFYFLVVAILQMIPGLSTTGTFTT  359
            ++ +   Y  N I +S+Y+  +F P+ LF QF ++AN YFL++AILQ+IPG+S TG +TT
Sbjct  7    EKNSEFKYPSNKISTSKYTLLTFLPKNLFEQFRRVANLYFLLIAILQLIPGISPTGPYTT  66

Query  360  L  360
            +
Sbjct  67   I  67


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 70.7 bits (174),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 48/111 (43%), Gaps = 23/111 (21%)

Query  805  ALCHTCIPEKNESGSVSFQAASPDELALVMAAQDLGYLVIDRQPNTLTIRTYPNGPEEEH  864
            ALC++   ++NE          P E AL++ A+ +G  V + + +               
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEKMGIDVEELRKD---------------  45

Query  865  QDEVYEILDVIEFTSTRKRMSVVVRMPDH-RICLFCKGADSTLMRLLKRSS  914
                Y  +  I F S RKRMS V ++PD  +  LF KGA      +L R +
Sbjct  46   ----YPRVAEIPFNSDRKRMSTVHKLPDDGKYRLFVKGAPE---IILDRCT  89



Lambda      K        H        a         alpha
   0.318    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0835    0.140     1.90     42.6     43.6 

Effective search space used: 2106285300


Query= TCONS_00030822

Length=1675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating...  312     1e-97
CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating...  96.4    2e-24
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  70.7    3e-15


>CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating P-type 
ATPase C-terminal.  PhoLip_ATPase_C is found at the C-terminus 
of a number of phospholipid-translocating ATPases. It is 
found in higher eukaryotes.
Length=250

 Score = 312 bits (803),  Expect = 1e-97, Method: Composition-based stats.
 Identities = 99/229 (43%), Positives = 145/229 (63%), Gaps = 7/229 (3%)

Query  1295  ARISDYSIAQFRFLLKLLLVHGRWNYIRACKYTLGTFWKEMLFYLTQALYQRWNGYTGTS  1354
             AR SDY+IAQFRFL +LLLVHGRW+Y R  K  L  F+K ++F LTQ  YQ +NG++G S
Sbjct  1     ARASDYAIAQFRFLKRLLLVHGRWSYRRTSKLILYFFYKNIVFTLTQFWYQFYNGFSGQS  60

Query  1355  LYEPWSLSMFNTLFTSLAVIFLGIFTKDLSASTLLAVPELYTKGQRHGGFNIRIYLGWTF  1414
             LYE W L+++N LFTSL VI LGIF +D+SA TLLA PELY  GQ++  FN++ +LGW  
Sbjct  61    LYESWYLTLYNLLFTSLPVIVLGIFDQDVSAETLLAYPELYKLGQKNKFFNLKTFLGWML  120

Query  1415  MATCEAMIVFFVMYGLFGNVLFTNTG-SDIFSAGLVTYSACVIIINTKLQALEVHNKTYL  1473
                 +++I+FF+ Y  +G+ +F+    +D+++ G   ++A V+++N KL ALE H  T++
Sbjct  121   DGIYQSLIIFFIPYLAYGDSVFSGGKDADLWAFGTTVFTALVLVVNLKL-ALETHYWTWI  179

Query  1474  SLIVIVISVGGWFLWNLILSRRYQIESGDGIYHVPCNFILQSGRDLAFW  1522
             + + I  S+  +FL+ LI S  Y                 +     +FW
Sbjct  180   THLAIWGSILLYFLFTLIYSSIYPSSYSVFYG-----VASRLFGSPSFW  223


>CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating ATPase 
N-terminal.  PhoLip_ATPase_N is found at the N-terminus of 
a number of phospholipid-translocating ATPases. It is found 
in higher eukaryotes.
Length=67

 Score = 96.4 bits (241),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 28/61 (46%), Positives = 44/61 (72%), Gaps = 0/61 (0%)

Query  300  DERTGKPYVGNWIRSSRYSFWSFFPRQLFAQFTKLANFYFLVVAILQMIPGLSTTGTFTT  359
            ++ +   Y  N I +S+Y+  +F P+ LF QF ++AN YFL++AILQ+IPG+S TG +TT
Sbjct  7    EKNSEFKYPSNKISTSKYTLLTFLPKNLFEQFRRVANLYFLLIAILQLIPGISPTGPYTT  66

Query  360  L  360
            +
Sbjct  67   I  67


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 70.7 bits (174),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 48/111 (43%), Gaps = 23/111 (21%)

Query  805  ALCHTCIPEKNESGSVSFQAASPDELALVMAAQDLGYLVIDRQPNTLTIRTYPNGPEEEH  864
            ALC++   ++NE          P E AL++ A+ +G  V + + +               
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEKMGIDVEELRKD---------------  45

Query  865  QDEVYEILDVIEFTSTRKRMSVVVRMPDH-RICLFCKGADSTLMRLLKRSS  914
                Y  +  I F S RKRMS V ++PD  +  LF KGA      +L R +
Sbjct  46   ----YPRVAEIPFNSDRKRMSTVHKLPDDGKYRLFVKGAPE---IILDRCT  89



Lambda      K        H        a         alpha
   0.318    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2106285300


Query= TCONS_00030826

Length=1675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating...  312     1e-97
CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating...  96.4    2e-24
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  70.7    3e-15


>CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating P-type 
ATPase C-terminal.  PhoLip_ATPase_C is found at the C-terminus 
of a number of phospholipid-translocating ATPases. It is 
found in higher eukaryotes.
Length=250

 Score = 312 bits (803),  Expect = 1e-97, Method: Composition-based stats.
 Identities = 99/229 (43%), Positives = 145/229 (63%), Gaps = 7/229 (3%)

Query  1295  ARISDYSIAQFRFLLKLLLVHGRWNYIRACKYTLGTFWKEMLFYLTQALYQRWNGYTGTS  1354
             AR SDY+IAQFRFL +LLLVHGRW+Y R  K  L  F+K ++F LTQ  YQ +NG++G S
Sbjct  1     ARASDYAIAQFRFLKRLLLVHGRWSYRRTSKLILYFFYKNIVFTLTQFWYQFYNGFSGQS  60

Query  1355  LYEPWSLSMFNTLFTSLAVIFLGIFTKDLSASTLLAVPELYTKGQRHGGFNIRIYLGWTF  1414
             LYE W L+++N LFTSL VI LGIF +D+SA TLLA PELY  GQ++  FN++ +LGW  
Sbjct  61    LYESWYLTLYNLLFTSLPVIVLGIFDQDVSAETLLAYPELYKLGQKNKFFNLKTFLGWML  120

Query  1415  MATCEAMIVFFVMYGLFGNVLFTNTG-SDIFSAGLVTYSACVIIINTKLQALEVHNKTYL  1473
                 +++I+FF+ Y  +G+ +F+    +D+++ G   ++A V+++N KL ALE H  T++
Sbjct  121   DGIYQSLIIFFIPYLAYGDSVFSGGKDADLWAFGTTVFTALVLVVNLKL-ALETHYWTWI  179

Query  1474  SLIVIVISVGGWFLWNLILSRRYQIESGDGIYHVPCNFILQSGRDLAFW  1522
             + + I  S+  +FL+ LI S  Y                 +     +FW
Sbjct  180   THLAIWGSILLYFLFTLIYSSIYPSSYSVFYG-----VASRLFGSPSFW  223


>CDD:465069 pfam16209, PhoLip_ATPase_N, Phospholipid-translocating ATPase 
N-terminal.  PhoLip_ATPase_N is found at the N-terminus of 
a number of phospholipid-translocating ATPases. It is found 
in higher eukaryotes.
Length=67

 Score = 96.4 bits (241),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 28/61 (46%), Positives = 44/61 (72%), Gaps = 0/61 (0%)

Query  300  DERTGKPYVGNWIRSSRYSFWSFFPRQLFAQFTKLANFYFLVVAILQMIPGLSTTGTFTT  359
            ++ +   Y  N I +S+Y+  +F P+ LF QF ++AN YFL++AILQ+IPG+S TG +TT
Sbjct  7    EKNSEFKYPSNKISTSKYTLLTFLPKNLFEQFRRVANLYFLLIAILQLIPGISPTGPYTT  66

Query  360  L  360
            +
Sbjct  67   I  67


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 70.7 bits (174),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 48/111 (43%), Gaps = 23/111 (21%)

Query  805  ALCHTCIPEKNESGSVSFQAASPDELALVMAAQDLGYLVIDRQPNTLTIRTYPNGPEEEH  864
            ALC++   ++NE          P E AL++ A+ +G  V + + +               
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEKMGIDVEELRKD---------------  45

Query  865  QDEVYEILDVIEFTSTRKRMSVVVRMPDH-RICLFCKGADSTLMRLLKRSS  914
                Y  +  I F S RKRMS V ++PD  +  LF KGA      +L R +
Sbjct  46   ----YPRVAEIPFNSDRKRMSTVHKLPDDGKYRLFVKGAPE---IILDRCT  89



Lambda      K        H        a         alpha
   0.318    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2106285300


Query= TCONS_00030827

Length=1329
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating...  307     2e-96
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  69.9    4e-15


>CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating P-type 
ATPase C-terminal.  PhoLip_ATPase_C is found at the C-terminus 
of a number of phospholipid-translocating ATPases. It is 
found in higher eukaryotes.
Length=250

 Score = 307 bits (789),  Expect = 2e-96, Method: Composition-based stats.
 Identities = 99/229 (43%), Positives = 145/229 (63%), Gaps = 7/229 (3%)

Query  949   ARISDYSIAQFRFLLKLLLVHGRWNYIRACKYTLGTFWKEMLFYLTQALYQRWNGYTGTS  1008
             AR SDY+IAQFRFL +LLLVHGRW+Y R  K  L  F+K ++F LTQ  YQ +NG++G S
Sbjct  1     ARASDYAIAQFRFLKRLLLVHGRWSYRRTSKLILYFFYKNIVFTLTQFWYQFYNGFSGQS  60

Query  1009  LYEPWSLSMFNTLFTSLAVIFLGIFTKDLSASTLLAVPELYTKGQRHGGFNIRIYLGWTF  1068
             LYE W L+++N LFTSL VI LGIF +D+SA TLLA PELY  GQ++  FN++ +LGW  
Sbjct  61    LYESWYLTLYNLLFTSLPVIVLGIFDQDVSAETLLAYPELYKLGQKNKFFNLKTFLGWML  120

Query  1069  MATCEAMIVFFVMYGLFGNVLFTNTG-SDIFSAGLVTYSACVIIINTKLQALEVHNKTYL  1127
                 +++I+FF+ Y  +G+ +F+    +D+++ G   ++A V+++N KL ALE H  T++
Sbjct  121   DGIYQSLIIFFIPYLAYGDSVFSGGKDADLWAFGTTVFTALVLVVNLKL-ALETHYWTWI  179

Query  1128  SLIVIVISVGGWFLWNLILSRRYQIESGDGIYHVPCNFILQSGRDLAFW  1176
             + + I  S+  +FL+ LI S  Y                 +     +FW
Sbjct  180   THLAIWGSILLYFLFTLIYSSIYPSSYSVFYG-----VASRLFGSPSFW  223


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 69.9 bits (172),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 48/111 (43%), Gaps = 23/111 (21%)

Query  459  ALCHTCIPEKNESGSVSFQAASPDELALVMAAQDLGYLVIDRQPNTLTIRTYPNGPEEEH  518
            ALC++   ++NE          P E AL++ A+ +G  V + + +               
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEKMGIDVEELRKD---------------  45

Query  519  QDEVYEILDVIEFTSTRKRMSVVVRMPDH-RICLFCKGADSTLMRLLKRSS  568
                Y  +  I F S RKRMS V ++PD  +  LF KGA      +L R +
Sbjct  46   ----YPRVAEIPFNSDRKRMSTVHKLPDDGKYRLFVKGAPE---IILDRCT  89



Lambda      K        H        a         alpha
   0.320    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1694594600


Query= TCONS_00030828

Length=1329
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating...  307     2e-96
CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-t...  69.9    4e-15


>CDD:465071 pfam16212, PhoLip_ATPase_C, Phospholipid-translocating P-type 
ATPase C-terminal.  PhoLip_ATPase_C is found at the C-terminus 
of a number of phospholipid-translocating ATPases. It is 
found in higher eukaryotes.
Length=250

 Score = 307 bits (789),  Expect = 2e-96, Method: Composition-based stats.
 Identities = 99/229 (43%), Positives = 145/229 (63%), Gaps = 7/229 (3%)

Query  949   ARISDYSIAQFRFLLKLLLVHGRWNYIRACKYTLGTFWKEMLFYLTQALYQRWNGYTGTS  1008
             AR SDY+IAQFRFL +LLLVHGRW+Y R  K  L  F+K ++F LTQ  YQ +NG++G S
Sbjct  1     ARASDYAIAQFRFLKRLLLVHGRWSYRRTSKLILYFFYKNIVFTLTQFWYQFYNGFSGQS  60

Query  1009  LYEPWSLSMFNTLFTSLAVIFLGIFTKDLSASTLLAVPELYTKGQRHGGFNIRIYLGWTF  1068
             LYE W L+++N LFTSL VI LGIF +D+SA TLLA PELY  GQ++  FN++ +LGW  
Sbjct  61    LYESWYLTLYNLLFTSLPVIVLGIFDQDVSAETLLAYPELYKLGQKNKFFNLKTFLGWML  120

Query  1069  MATCEAMIVFFVMYGLFGNVLFTNTG-SDIFSAGLVTYSACVIIINTKLQALEVHNKTYL  1127
                 +++I+FF+ Y  +G+ +F+    +D+++ G   ++A V+++N KL ALE H  T++
Sbjct  121   DGIYQSLIIFFIPYLAYGDSVFSGGKDADLWAFGTTVFTALVLVVNLKL-ALETHYWTWI  179

Query  1128  SLIVIVISVGGWFLWNLILSRRYQIESGDGIYHVPCNFILQSGRDLAFW  1176
             + + I  S+  +FL+ LI S  Y                 +     +FW
Sbjct  180   THLAIWGSILLYFLFTLIYSSIYPSSYSVFYG-----VASRLFGSPSFW  223


>CDD:463817 pfam13246, Cation_ATPase, Cation transport ATPase (P-type).  
This domain is found in cation transport ATPases, including 
phospholipid-transporting ATPases, calcium-transporting ATPases, 
and sodium-potassium ATPases.
Length=91

 Score = 69.9 bits (172),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 31/111 (28%), Positives = 48/111 (43%), Gaps = 23/111 (21%)

Query  459  ALCHTCIPEKNESGSVSFQAASPDELALVMAAQDLGYLVIDRQPNTLTIRTYPNGPEEEH  518
            ALC++   ++NE          P E AL++ A+ +G  V + + +               
Sbjct  1    ALCNSAAFDENEEKGKWEIVGDPTESALLVFAEKMGIDVEELRKD---------------  45

Query  519  QDEVYEILDVIEFTSTRKRMSVVVRMPDH-RICLFCKGADSTLMRLLKRSS  568
                Y  +  I F S RKRMS V ++PD  +  LF KGA      +L R +
Sbjct  46   ----YPRVAEIPFNSDRKRMSTVHKLPDDGKYRLFVKGAPE---IILDRCT  89



Lambda      K        H        a         alpha
   0.320    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1694594600


Query= TCONS_00030829

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.125    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00035219

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00035220

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00030830

Length=486


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00035222

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459649 pfam00046, Homeobox, Homeobox domain                       91.8    2e-23


>CDD:459649 pfam00046, Homeobox, Homeobox domain.  
Length=57

 Score = 91.8 bits (229),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 29/54 (54%), Positives = 38/54 (70%), Gaps = 0/54 (0%)

Query  64   KRQRATQDQLVTLELEFNKNPTPTAATRERIAQEINMTERSVQIWFQNRRAKIK  117
            KR   T +QL  LE EF +NP P+A  RE +A ++ +TER V++WFQNRRAK K
Sbjct  3    KRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK  56



Lambda      K        H        a         alpha
   0.312    0.125    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 763652708


Query= TCONS_00035223

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459649 pfam00046, Homeobox, Homeobox domain                       91.8    2e-23


>CDD:459649 pfam00046, Homeobox, Homeobox domain.  
Length=57

 Score = 91.8 bits (229),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 29/54 (54%), Positives = 38/54 (70%), Gaps = 0/54 (0%)

Query  64   KRQRATQDQLVTLELEFNKNPTPTAATRERIAQEINMTERSVQIWFQNRRAKIK  117
            KR   T +QL  LE EF +NP P+A  RE +A ++ +TER V++WFQNRRAK K
Sbjct  3    KRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK  56



Lambda      K        H        a         alpha
   0.312    0.125    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 763652708


Query= TCONS_00035224

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462994 pfam10199, Adaptin_binding, Alpha and gamma adaptin bi...  74.5    5e-17


>CDD:462994 pfam10199, Adaptin_binding, Alpha and gamma adaptin binding protein 
p34.  p34 is a protein involved in membrane trafficking. 
It is known to interact with both alpha and gamma adaptin. 
It has been speculated that p34 may play a chaperone role 
such as preventing the soluble adaptors from co-assembling 
with soluble clathrin, or helping to remove the adaptors from 
the coated vesicle. Another possible function is in aiding 
the recruitment of soluble adaptors onto the membrane.
Length=96

 Score = 74.5 bits (183),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 27/123 (22%)

Query  321  EYQGMRRIREILETNDWAAPSEDAAPGGISGDGLEEHLLGLDCGENGFDLEVNELEREML  380
            E QG+ RI EILET++W+   E  +  G                          L+RE L
Sbjct  1    EKQGIERIVEILETHEWSN-MELKSDDGS-------------------------LQREKL  34

Query  381  GLRMAIEHGGDGGEDQDEDEDNDDGLKVESLEALMMRMQAIRDMSSELPESERKKFAAKA  440
             L  A    G    +  + +D D+ L VE  E L+ +++  RDM+ ELP+ ERK+FAAK 
Sbjct  35   SLEKADS-QGQSLPNGKDLQDGDEELDVEDFENLLSKLKQARDMARELPDEERKEFAAKV  93

Query  441  VRD  443
              D
Sbjct  94   AED  96



Lambda      K        H        a         alpha
   0.312    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00035225

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462994 pfam10199, Adaptin_binding, Alpha and gamma adaptin bi...  74.5    5e-17


>CDD:462994 pfam10199, Adaptin_binding, Alpha and gamma adaptin binding protein 
p34.  p34 is a protein involved in membrane trafficking. 
It is known to interact with both alpha and gamma adaptin. 
It has been speculated that p34 may play a chaperone role 
such as preventing the soluble adaptors from co-assembling 
with soluble clathrin, or helping to remove the adaptors from 
the coated vesicle. Another possible function is in aiding 
the recruitment of soluble adaptors onto the membrane.
Length=96

 Score = 74.5 bits (183),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 27/123 (22%)

Query  321  EYQGMRRIREILETNDWAAPSEDAAPGGISGDGLEEHLLGLDCGENGFDLEVNELEREML  380
            E QG+ RI EILET++W+   E  +  G                          L+RE L
Sbjct  1    EKQGIERIVEILETHEWSN-MELKSDDGS-------------------------LQREKL  34

Query  381  GLRMAIEHGGDGGEDQDEDEDNDDGLKVESLEALMMRMQAIRDMSSELPESERKKFAAKA  440
             L  A    G    +  + +D D+ L VE  E L+ +++  RDM+ ELP+ ERK+FAAK 
Sbjct  35   SLEKADS-QGQSLPNGKDLQDGDEELDVEDFENLLSKLKQARDMARELPDEERKEFAAKV  93

Query  441  VRD  443
              D
Sbjct  94   AED  96



Lambda      K        H        a         alpha
   0.312    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0709    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00030834

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459649 pfam00046, Homeobox, Homeobox domain                       91.8    2e-23


>CDD:459649 pfam00046, Homeobox, Homeobox domain.  
Length=57

 Score = 91.8 bits (229),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 29/54 (54%), Positives = 38/54 (70%), Gaps = 0/54 (0%)

Query  64   KRQRATQDQLVTLELEFNKNPTPTAATRERIAQEINMTERSVQIWFQNRRAKIK  117
            KR   T +QL  LE EF +NP P+A  RE +A ++ +TER V++WFQNRRAK K
Sbjct  3    KRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK  56



Lambda      K        H        a         alpha
   0.312    0.125    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 763652708


Query= TCONS_00030832

Length=403


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00030835

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462994 pfam10199, Adaptin_binding, Alpha and gamma adaptin bi...  74.5    5e-17


>CDD:462994 pfam10199, Adaptin_binding, Alpha and gamma adaptin binding protein 
p34.  p34 is a protein involved in membrane trafficking. 
It is known to interact with both alpha and gamma adaptin. 
It has been speculated that p34 may play a chaperone role 
such as preventing the soluble adaptors from co-assembling 
with soluble clathrin, or helping to remove the adaptors from 
the coated vesicle. Another possible function is in aiding 
the recruitment of soluble adaptors onto the membrane.
Length=96

 Score = 74.5 bits (183),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 27/123 (22%)

Query  321  EYQGMRRIREILETNDWAAPSEDAAPGGISGDGLEEHLLGLDCGENGFDLEVNELEREML  380
            E QG+ RI EILET++W+   E  +  G                          L+RE L
Sbjct  1    EKQGIERIVEILETHEWSN-MELKSDDGS-------------------------LQREKL  34

Query  381  GLRMAIEHGGDGGEDQDEDEDNDDGLKVESLEALMMRMQAIRDMSSELPESERKKFAAKA  440
             L  A    G    +  + +D D+ L VE  E L+ +++  RDM+ ELP+ ERK+FAAK 
Sbjct  35   SLEKADS-QGQSLPNGKDLQDGDEELDVEDFENLLSKLKQARDMARELPDEERKEFAAKV  93

Query  441  VRD  443
              D
Sbjct  94   AED  96



Lambda      K        H        a         alpha
   0.312    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00030836

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426352 pfam01627, Hpt, Hpt domain. The histidine-containing p...  59.3    7e-13


>CDD:426352 pfam01627, Hpt, Hpt domain.  The histidine-containing phosphotransfer 
(HPt) domain is a novel protein module with an active 
histidine residue that mediates phosphotransfer reactions 
in the two-component signaling systems. A multistep phosphorelay 
involving the HPt domain has been suggested for these 
signaling pathways. The crystal structure of the HPt domain 
of the anaerobic sensor kinase ArcB has been determined. The 
domain consists of six alpha helices containing a four-helix 
bundle-folding. The pattern of sequence similarity of the 
HPt domains of ArcB and components in other signaling systems 
can be interpreted in light of the three-dimensional structure 
and supports the conclusion that the HPt domains have a 
common structural motif both in prokaryotes and eukaryotes. 
In S. cerevisiae ypd1p this domain has been shown to contain 
a binding surface for Ssk1p (response regulator receiver domain 
containing protein pfam00072).
Length=84

 Score = 59.3 bits (144),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 18/83 (22%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query  61   FFDQAETTFDKMDKALEKKDLDELSSLGHFLKGSSATLGLKKVKDHCEKIQHYGAGKDET  120
            F ++A    +++++AL+ +DL+ L    H LKGS+ +LGL  + +   +++         
Sbjct  6    FLEEAPELLEQLEQALDAEDLEALFRAAHTLKGSAGSLGLPALAELAHELEDLLREG---  62

Query  121  GTVDEPDEEKSLQNIKETLAEVK  143
               + P + + L+ +++ L  ++
Sbjct  63   ---ELPLDPELLEALRDLLEALR  82



Lambda      K        H        a         alpha
   0.306    0.126    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00030837

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426352 pfam01627, Hpt, Hpt domain. The histidine-containing p...  59.3    7e-13


>CDD:426352 pfam01627, Hpt, Hpt domain.  The histidine-containing phosphotransfer 
(HPt) domain is a novel protein module with an active 
histidine residue that mediates phosphotransfer reactions 
in the two-component signaling systems. A multistep phosphorelay 
involving the HPt domain has been suggested for these 
signaling pathways. The crystal structure of the HPt domain 
of the anaerobic sensor kinase ArcB has been determined. The 
domain consists of six alpha helices containing a four-helix 
bundle-folding. The pattern of sequence similarity of the 
HPt domains of ArcB and components in other signaling systems 
can be interpreted in light of the three-dimensional structure 
and supports the conclusion that the HPt domains have a 
common structural motif both in prokaryotes and eukaryotes. 
In S. cerevisiae ypd1p this domain has been shown to contain 
a binding surface for Ssk1p (response regulator receiver domain 
containing protein pfam00072).
Length=84

 Score = 59.3 bits (144),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 18/83 (22%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query  61   FFDQAETTFDKMDKALEKKDLDELSSLGHFLKGSSATLGLKKVKDHCEKIQHYGAGKDET  120
            F ++A    +++++AL+ +DL+ L    H LKGS+ +LGL  + +   +++         
Sbjct  6    FLEEAPELLEQLEQALDAEDLEALFRAAHTLKGSAGSLGLPALAELAHELEDLLREG---  62

Query  121  GTVDEPDEEKSLQNIKETLAEVK  143
               + P + + L+ +++ L  ++
Sbjct  63   ---ELPLDPELLEALRDLLEALR  82



Lambda      K        H        a         alpha
   0.306    0.126    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00035226

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00035227

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00035228

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00035229

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00035230

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00030838

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426352 pfam01627, Hpt, Hpt domain. The histidine-containing p...  59.3    7e-13


>CDD:426352 pfam01627, Hpt, Hpt domain.  The histidine-containing phosphotransfer 
(HPt) domain is a novel protein module with an active 
histidine residue that mediates phosphotransfer reactions 
in the two-component signaling systems. A multistep phosphorelay 
involving the HPt domain has been suggested for these 
signaling pathways. The crystal structure of the HPt domain 
of the anaerobic sensor kinase ArcB has been determined. The 
domain consists of six alpha helices containing a four-helix 
bundle-folding. The pattern of sequence similarity of the 
HPt domains of ArcB and components in other signaling systems 
can be interpreted in light of the three-dimensional structure 
and supports the conclusion that the HPt domains have a 
common structural motif both in prokaryotes and eukaryotes. 
In S. cerevisiae ypd1p this domain has been shown to contain 
a binding surface for Ssk1p (response regulator receiver domain 
containing protein pfam00072).
Length=84

 Score = 59.3 bits (144),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 18/83 (22%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query  61   FFDQAETTFDKMDKALEKKDLDELSSLGHFLKGSSATLGLKKVKDHCEKIQHYGAGKDET  120
            F ++A    +++++AL+ +DL+ L    H LKGS+ +LGL  + +   +++         
Sbjct  6    FLEEAPELLEQLEQALDAEDLEALFRAAHTLKGSAGSLGLPALAELAHELEDLLREG---  62

Query  121  GTVDEPDEEKSLQNIKETLAEVK  143
               + P + + L+ +++ L  ++
Sbjct  63   ---ELPLDPELLEALRDLLEALR  82



Lambda      K        H        a         alpha
   0.306    0.126    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00030839

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426352 pfam01627, Hpt, Hpt domain. The histidine-containing p...  59.3    7e-13


>CDD:426352 pfam01627, Hpt, Hpt domain.  The histidine-containing phosphotransfer 
(HPt) domain is a novel protein module with an active 
histidine residue that mediates phosphotransfer reactions 
in the two-component signaling systems. A multistep phosphorelay 
involving the HPt domain has been suggested for these 
signaling pathways. The crystal structure of the HPt domain 
of the anaerobic sensor kinase ArcB has been determined. The 
domain consists of six alpha helices containing a four-helix 
bundle-folding. The pattern of sequence similarity of the 
HPt domains of ArcB and components in other signaling systems 
can be interpreted in light of the three-dimensional structure 
and supports the conclusion that the HPt domains have a 
common structural motif both in prokaryotes and eukaryotes. 
In S. cerevisiae ypd1p this domain has been shown to contain 
a binding surface for Ssk1p (response regulator receiver domain 
containing protein pfam00072).
Length=84

 Score = 59.3 bits (144),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 18/83 (22%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query  61   FFDQAETTFDKMDKALEKKDLDELSSLGHFLKGSSATLGLKKVKDHCEKIQHYGAGKDET  120
            F ++A    +++++AL+ +DL+ L    H LKGS+ +LGL  + +   +++         
Sbjct  6    FLEEAPELLEQLEQALDAEDLEALFRAAHTLKGSAGSLGLPALAELAHELEDLLREG---  62

Query  121  GTVDEPDEEKSLQNIKETLAEVK  143
               + P + + L+ +++ L  ++
Sbjct  63   ---ELPLDPELLEALRDLLEALR  82



Lambda      K        H        a         alpha
   0.306    0.126    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00030840

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426352 pfam01627, Hpt, Hpt domain. The histidine-containing p...  59.3    7e-13


>CDD:426352 pfam01627, Hpt, Hpt domain.  The histidine-containing phosphotransfer 
(HPt) domain is a novel protein module with an active 
histidine residue that mediates phosphotransfer reactions 
in the two-component signaling systems. A multistep phosphorelay 
involving the HPt domain has been suggested for these 
signaling pathways. The crystal structure of the HPt domain 
of the anaerobic sensor kinase ArcB has been determined. The 
domain consists of six alpha helices containing a four-helix 
bundle-folding. The pattern of sequence similarity of the 
HPt domains of ArcB and components in other signaling systems 
can be interpreted in light of the three-dimensional structure 
and supports the conclusion that the HPt domains have a 
common structural motif both in prokaryotes and eukaryotes. 
In S. cerevisiae ypd1p this domain has been shown to contain 
a binding surface for Ssk1p (response regulator receiver domain 
containing protein pfam00072).
Length=84

 Score = 59.3 bits (144),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 18/83 (22%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query  61   FFDQAETTFDKMDKALEKKDLDELSSLGHFLKGSSATLGLKKVKDHCEKIQHYGAGKDET  120
            F ++A    +++++AL+ +DL+ L    H LKGS+ +LGL  + +   +++         
Sbjct  6    FLEEAPELLEQLEQALDAEDLEALFRAAHTLKGSAGSLGLPALAELAHELEDLLREG---  62

Query  121  GTVDEPDEEKSLQNIKETLAEVK  143
               + P + + L+ +++ L  ++
Sbjct  63   ---ELPLDPELLEALRDLLEALR  82



Lambda      K        H        a         alpha
   0.306    0.126    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00035233

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426352 pfam01627, Hpt, Hpt domain. The histidine-containing p...  59.3    7e-13


>CDD:426352 pfam01627, Hpt, Hpt domain.  The histidine-containing phosphotransfer 
(HPt) domain is a novel protein module with an active 
histidine residue that mediates phosphotransfer reactions 
in the two-component signaling systems. A multistep phosphorelay 
involving the HPt domain has been suggested for these 
signaling pathways. The crystal structure of the HPt domain 
of the anaerobic sensor kinase ArcB has been determined. The 
domain consists of six alpha helices containing a four-helix 
bundle-folding. The pattern of sequence similarity of the 
HPt domains of ArcB and components in other signaling systems 
can be interpreted in light of the three-dimensional structure 
and supports the conclusion that the HPt domains have a 
common structural motif both in prokaryotes and eukaryotes. 
In S. cerevisiae ypd1p this domain has been shown to contain 
a binding surface for Ssk1p (response regulator receiver domain 
containing protein pfam00072).
Length=84

 Score = 59.3 bits (144),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 18/83 (22%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query  61   FFDQAETTFDKMDKALEKKDLDELSSLGHFLKGSSATLGLKKVKDHCEKIQHYGAGKDET  120
            F ++A    +++++AL+ +DL+ L    H LKGS+ +LGL  + +   +++         
Sbjct  6    FLEEAPELLEQLEQALDAEDLEALFRAAHTLKGSAGSLGLPALAELAHELEDLLREG---  62

Query  121  GTVDEPDEEKSLQNIKETLAEVK  143
               + P + + L+ +++ L  ++
Sbjct  63   ---ELPLDPELLEALRDLLEALR  82



Lambda      K        H        a         alpha
   0.306    0.126    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00030841

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426352 pfam01627, Hpt, Hpt domain. The histidine-containing p...  59.3    7e-13


>CDD:426352 pfam01627, Hpt, Hpt domain.  The histidine-containing phosphotransfer 
(HPt) domain is a novel protein module with an active 
histidine residue that mediates phosphotransfer reactions 
in the two-component signaling systems. A multistep phosphorelay 
involving the HPt domain has been suggested for these 
signaling pathways. The crystal structure of the HPt domain 
of the anaerobic sensor kinase ArcB has been determined. The 
domain consists of six alpha helices containing a four-helix 
bundle-folding. The pattern of sequence similarity of the 
HPt domains of ArcB and components in other signaling systems 
can be interpreted in light of the three-dimensional structure 
and supports the conclusion that the HPt domains have a 
common structural motif both in prokaryotes and eukaryotes. 
In S. cerevisiae ypd1p this domain has been shown to contain 
a binding surface for Ssk1p (response regulator receiver domain 
containing protein pfam00072).
Length=84

 Score = 59.3 bits (144),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 18/83 (22%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query  61   FFDQAETTFDKMDKALEKKDLDELSSLGHFLKGSSATLGLKKVKDHCEKIQHYGAGKDET  120
            F ++A    +++++AL+ +DL+ L    H LKGS+ +LGL  + +   +++         
Sbjct  6    FLEEAPELLEQLEQALDAEDLEALFRAAHTLKGSAGSLGLPALAELAHELEDLLREG---  62

Query  121  GTVDEPDEEKSLQNIKETLAEVK  143
               + P + + L+ +++ L  ++
Sbjct  63   ---ELPLDPELLEALRDLLEALR  82



Lambda      K        H        a         alpha
   0.306    0.126    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00035234

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426352 pfam01627, Hpt, Hpt domain. The histidine-containing p...  59.3    7e-13


>CDD:426352 pfam01627, Hpt, Hpt domain.  The histidine-containing phosphotransfer 
(HPt) domain is a novel protein module with an active 
histidine residue that mediates phosphotransfer reactions 
in the two-component signaling systems. A multistep phosphorelay 
involving the HPt domain has been suggested for these 
signaling pathways. The crystal structure of the HPt domain 
of the anaerobic sensor kinase ArcB has been determined. The 
domain consists of six alpha helices containing a four-helix 
bundle-folding. The pattern of sequence similarity of the 
HPt domains of ArcB and components in other signaling systems 
can be interpreted in light of the three-dimensional structure 
and supports the conclusion that the HPt domains have a 
common structural motif both in prokaryotes and eukaryotes. 
In S. cerevisiae ypd1p this domain has been shown to contain 
a binding surface for Ssk1p (response regulator receiver domain 
containing protein pfam00072).
Length=84

 Score = 59.3 bits (144),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 18/83 (22%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query  61   FFDQAETTFDKMDKALEKKDLDELSSLGHFLKGSSATLGLKKVKDHCEKIQHYGAGKDET  120
            F ++A    +++++AL+ +DL+ L    H LKGS+ +LGL  + +   +++         
Sbjct  6    FLEEAPELLEQLEQALDAEDLEALFRAAHTLKGSAGSLGLPALAELAHELEDLLREG---  62

Query  121  GTVDEPDEEKSLQNIKETLAEVK  143
               + P + + L+ +++ L  ++
Sbjct  63   ---ELPLDPELLEALRDLLEALR  82



Lambda      K        H        a         alpha
   0.306    0.126    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00035235

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426352 pfam01627, Hpt, Hpt domain. The histidine-containing p...  59.3    7e-13


>CDD:426352 pfam01627, Hpt, Hpt domain.  The histidine-containing phosphotransfer 
(HPt) domain is a novel protein module with an active 
histidine residue that mediates phosphotransfer reactions 
in the two-component signaling systems. A multistep phosphorelay 
involving the HPt domain has been suggested for these 
signaling pathways. The crystal structure of the HPt domain 
of the anaerobic sensor kinase ArcB has been determined. The 
domain consists of six alpha helices containing a four-helix 
bundle-folding. The pattern of sequence similarity of the 
HPt domains of ArcB and components in other signaling systems 
can be interpreted in light of the three-dimensional structure 
and supports the conclusion that the HPt domains have a 
common structural motif both in prokaryotes and eukaryotes. 
In S. cerevisiae ypd1p this domain has been shown to contain 
a binding surface for Ssk1p (response regulator receiver domain 
containing protein pfam00072).
Length=84

 Score = 59.3 bits (144),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 18/83 (22%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query  61   FFDQAETTFDKMDKALEKKDLDELSSLGHFLKGSSATLGLKKVKDHCEKIQHYGAGKDET  120
            F ++A    +++++AL+ +DL+ L    H LKGS+ +LGL  + +   +++         
Sbjct  6    FLEEAPELLEQLEQALDAEDLEALFRAAHTLKGSAGSLGLPALAELAHELEDLLREG---  62

Query  121  GTVDEPDEEKSLQNIKETLAEVK  143
               + P + + L+ +++ L  ++
Sbjct  63   ---ELPLDPELLEALRDLLEALR  82



Lambda      K        H        a         alpha
   0.306    0.126    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00035236

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426352 pfam01627, Hpt, Hpt domain. The histidine-containing p...  59.3    7e-13


>CDD:426352 pfam01627, Hpt, Hpt domain.  The histidine-containing phosphotransfer 
(HPt) domain is a novel protein module with an active 
histidine residue that mediates phosphotransfer reactions 
in the two-component signaling systems. A multistep phosphorelay 
involving the HPt domain has been suggested for these 
signaling pathways. The crystal structure of the HPt domain 
of the anaerobic sensor kinase ArcB has been determined. The 
domain consists of six alpha helices containing a four-helix 
bundle-folding. The pattern of sequence similarity of the 
HPt domains of ArcB and components in other signaling systems 
can be interpreted in light of the three-dimensional structure 
and supports the conclusion that the HPt domains have a 
common structural motif both in prokaryotes and eukaryotes. 
In S. cerevisiae ypd1p this domain has been shown to contain 
a binding surface for Ssk1p (response regulator receiver domain 
containing protein pfam00072).
Length=84

 Score = 59.3 bits (144),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 18/83 (22%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query  61   FFDQAETTFDKMDKALEKKDLDELSSLGHFLKGSSATLGLKKVKDHCEKIQHYGAGKDET  120
            F ++A    +++++AL+ +DL+ L    H LKGS+ +LGL  + +   +++         
Sbjct  6    FLEEAPELLEQLEQALDAEDLEALFRAAHTLKGSAGSLGLPALAELAHELEDLLREG---  62

Query  121  GTVDEPDEEKSLQNIKETLAEVK  143
               + P + + L+ +++ L  ++
Sbjct  63   ---ELPLDPELLEALRDLLEALR  82



Lambda      K        H        a         alpha
   0.306    0.126    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00030842

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00035237

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00035238

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461389 pfam04678, MCU, Mitochondrial calcium uniporter. MCU f...  91.2    6e-23


>CDD:461389 pfam04678, MCU, Mitochondrial calcium uniporter.  MCU functions 
with MICU1, an essential gatekeeper component of calcium-channel 
transport, to facilitate Ca2+ uptake into the mitochondrion.
Length=181

 Score = 91.2 bits (227),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 42/136 (31%), Positives = 64/136 (47%), Gaps = 1/136 (1%)

Query  85   LEQIHVAVPSFDERTYFLRMRLRKISGRIQGLAEIKHECDALAHRGAQRVALGGFGILAF  144
            L           ++   L  +L  +   ++ L E K E D  A R  +R+  GG G+L+ 
Sbjct  47   LYTALHVEEHQLKKERELLEKLEALREELEPLEEKKAEIDRKAARRVRRLLWGGLGLLSV  106

Query  145  WWYIVYKLTFETDLGWDTMEPVTYLVSLSTLMGGYLWFLYHNREISYRSALDFTINARQK  204
                + +LT+  +  WD MEPVTY V+  T M GY +FL   +E SY    D     R  
Sbjct  107  QTGALARLTW-WEYSWDVMEPVTYFVTYGTAMAGYAYFLLTKQEYSYEDFKDRQFLKRFH  165

Query  205  KLYQMKGIDLQVWESL  220
            KL + +G D++ +  L
Sbjct  166  KLAKKRGFDVERYNEL  181



Lambda      K        H        a         alpha
   0.319    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00030843

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00030844

Length=750


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 954579712


Query= TCONS_00030845

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00035239

Length=350


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00030846

Length=750


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 954579712


Query= TCONS_00035241

Length=750


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 954579712


Query= TCONS_00030847

Length=350


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00035242

Length=750


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 954579712


Query= TCONS_00030848

Length=769


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 982227600


Query= TCONS_00030849

Length=769


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 982227600


Query= TCONS_00035243

Length=255


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0714    0.140     1.90     42.6     43.6 

Effective search space used: 277421980


Query= TCONS_00035244

Length=703
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462215 pfam07576, BRAP2, BRCA1-associated protein 2. These pr...  155     1e-45
CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases a...  106     1e-28
CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   59.3    4e-12


>CDD:462215 pfam07576, BRAP2, BRCA1-associated protein 2.  These proteins 
include BRCA1-associated protein 2 (BRAP2), which binds nuclear 
localization signals (NLSs) in vitro and in yeast two-hybrid 
screening. These proteins share a region of sequence similarity 
at their N-terminus. They also have pfam02148 at the 
C-terminus.
Length=93

 Score = 155 bits (394),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 49/92 (53%), Positives = 64/92 (70%), Gaps = 1/92 (1%)

Query  222  EDCTTLCILAVPSYMSPSDFLGFVGETTMDEVSHFRMIRTARANRYMVLMKFRSGKKAKE  281
               T LCILAVP+YMSP+DFL F G + ++ +SH R+IR    NRYMVL+KF     A E
Sbjct  1    GRSTLLCILAVPNYMSPADFLQFCG-SFLEHISHIRIIRDGMENRYMVLIKFDDQNSADE  59

Query  282  WQKEWNGKVFNSMEPETCHVVFVKTVEIQAVN  313
            + +E+NGK F+S+EPE CHV+FVK+VE     
Sbjct  60   FYEEFNGKPFSSLEPEVCHVLFVKSVEYTESA  91


>CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other 
protein.  
Length=63

 Score = 106 bits (267),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 42/63 (67%), Gaps = 0/63 (0%)

Query  433  CSVCRSEVNLWICLICGNVGCGRYDGAHAFAHYKETSHAFAMDLASQRVWSYVGDAYVHR  492
            CS+C +  NLW+CL CG+VGCGRY  +HA  HY+ET H  A++L++  V+ Y  D YVH 
Sbjct  1    CSLCGNTSNLWLCLTCGHVGCGRYQNSHALEHYEETGHPLAVNLSTLTVYCYPCDDYVHD  60

Query  493  IIQ  495
               
Sbjct  61   PSL  63


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 59.3 bits (144),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 25/44 (57%), Gaps = 2/44 (5%)

Query  370  PTCPVCLERMDETTGLLTILCQHVFHCTCLQKWKGSG--CPVCR  411
              CP+CLE  +E   ++ + C H FH  CL KW  S   CP+CR
Sbjct  1    DECPICLEEFEEGDKVVVLPCGHHFHRECLDKWLRSSNTCPLCR  44



Lambda      K        H        a         alpha
   0.315    0.128    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 899621900


Query= TCONS_00030853

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459726 pfam00240, ubiquitin, Ubiquitin family. This family co...  102     2e-28
CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like...  62.2    3e-13


>CDD:459726 pfam00240, ubiquitin, Ubiquitin family.  This family contains 
a number of ubiquitin-like proteins: SUMO (smt3 homolog), Nedd8, 
Elongin B, Rub1, and Parkin. A number of them are thought 
to carry a distinctive five-residue motif termed the proteasome-interacting 
motif (PIM), which may have a biologically 
significant role in protein delivery to proteasomes and recruitment 
of proteasomes to transcription sites.
Length=72

 Score = 102 bits (257),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 0/72 (0%)

Query  3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ  62
           I VKTL GK ITLEV+ +DT+  +K KI +KEG+PP+QQRLI++GK LED +TL +Y I+
Sbjct  1   ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  63  KESTLHLVLRLR  74
             ST+HLVLR R
Sbjct  61  DGSTIHLVLRQR  72


 Score = 102 bits (257),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 0/72 (0%)

Query  79   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ  138
            I VKTL GK ITLEV+ +DT+  +K KI +KEG+PP+QQRLI++GK LED +TL +Y I+
Sbjct  1    ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  139  KESTLHLVLRLR  150
              ST+HLVLR R
Sbjct  61   DGSTIHLVLRQR  72


 Score = 102 bits (257),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 0/72 (0%)

Query  155  IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ  214
            I VKTL GK ITLEV+ +DT+  +K KI +KEG+PP+QQRLI++GK LED +TL +Y I+
Sbjct  1    ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  215  KESTLHLVLRLR  226
              ST+HLVLR R
Sbjct  61   DGSTIHLVLRQR  72


 Score = 102 bits (257),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 0/72 (0%)

Query  231  IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ  290
            I VKTL GK ITLEV+ +DT+  +K KI +KEG+PP+QQRLI++GK LED +TL +Y I+
Sbjct  1    ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  291  KESTLHLVLRLR  302
              ST+HLVLR R
Sbjct  61   DGSTIHLVLRQR  72


>CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like.  The 
small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, 
and although SUMO-1 shares structural similarity to Ub, 
SUMO's cellular functions remain distinct insomuch as SUMO 
modification alters protein function through changes in activity, 
cellular localization, or by protecting substrates from 
ubiquitination. Rad60 family members contain functionally 
enigmatic, integral SUMO-like domains (SLDs). Despite their 
divergence from SUMO, each Rad60 SLD interacts with a subset 
of SUMO pathway enzymes: SLD2 specifically binds the SUMO 
E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO 
E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called 
Siz1 and Siz2) specificity enzymes. Structural analysis 
of Structure 2uyz reveals a mechanistic basis for the near-synonymous 
roles of Rad60 and SUMO in survival of genotoxic 
stress and suggest unprecedented DNA-damage-response functions 
for SLDs in regulating SUMOylation. The Rad60 branch of this 
family is also known as RENi (Rad60-Esc2-Nip45), and biologically 
it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45).
Length=72

 Score = 62.2 bits (152),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 45/72 (63%), Gaps = 1/72 (1%)

Query  1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY  59
           ++I +K   GK + ++V+ + T+  + +  + K GIPP QQ RLIF G++L+   T+ D 
Sbjct  1   IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDL  60

Query  60  NIQKESTLHLVL  71
           +I+   T+ +V+
Sbjct  61  DIEDGDTIDVVI  72


 Score = 62.2 bits (152),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 45/72 (63%), Gaps = 1/72 (1%)

Query  77   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY  135
            ++I +K   GK + ++V+ + T+  + +  + K GIPP QQ RLIF G++L+   T+ D 
Sbjct  1    IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDL  60

Query  136  NIQKESTLHLVL  147
            +I+   T+ +V+
Sbjct  61   DIEDGDTIDVVI  72


 Score = 62.2 bits (152),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 45/72 (63%), Gaps = 1/72 (1%)

Query  153  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY  211
            ++I +K   GK + ++V+ + T+  + +  + K GIPP QQ RLIF G++L+   T+ D 
Sbjct  1    IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDL  60

Query  212  NIQKESTLHLVL  223
            +I+   T+ +V+
Sbjct  61   DIEDGDTIDVVI  72


 Score = 62.2 bits (152),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 45/72 (63%), Gaps = 1/72 (1%)

Query  229  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY  287
            ++I +K   GK + ++V+ + T+  + +  + K GIPP QQ RLIF G++L+   T+ D 
Sbjct  1    IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDL  60

Query  288  NIQKESTLHLVL  299
            +I+   T+ +V+
Sbjct  61   DIEDGDTIDVVI  72



Lambda      K        H        a         alpha
   0.315    0.135    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00030850

Length=229
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459726 pfam00240, ubiquitin, Ubiquitin family. This family co...  102     3e-29
CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like...  62.2    1e-13


>CDD:459726 pfam00240, ubiquitin, Ubiquitin family.  This family contains 
a number of ubiquitin-like proteins: SUMO (smt3 homolog), Nedd8, 
Elongin B, Rub1, and Parkin. A number of them are thought 
to carry a distinctive five-residue motif termed the proteasome-interacting 
motif (PIM), which may have a biologically 
significant role in protein delivery to proteasomes and recruitment 
of proteasomes to transcription sites.
Length=72

 Score = 102 bits (257),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 0/72 (0%)

Query  3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ  62
           I VKTL GK ITLEV+ +DT+  +K KI +KEG+PP+QQRLI++GK LED +TL +Y I+
Sbjct  1   ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  63  KESTLHLVLRLR  74
             ST+HLVLR R
Sbjct  61  DGSTIHLVLRQR  72


 Score = 102 bits (257),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 0/72 (0%)

Query  79   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ  138
            I VKTL GK ITLEV+ +DT+  +K KI +KEG+PP+QQRLI++GK LED +TL +Y I+
Sbjct  1    ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  139  KESTLHLVLRLR  150
              ST+HLVLR R
Sbjct  61   DGSTIHLVLRQR  72


 Score = 102 bits (257),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 0/72 (0%)

Query  155  IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ  214
            I VKTL GK ITLEV+ +DT+  +K KI +KEG+PP+QQRLI++GK LED +TL +Y I+
Sbjct  1    ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  215  KESTLHLVLRLR  226
              ST+HLVLR R
Sbjct  61   DGSTIHLVLRQR  72


>CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like.  The 
small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, 
and although SUMO-1 shares structural similarity to Ub, 
SUMO's cellular functions remain distinct insomuch as SUMO 
modification alters protein function through changes in activity, 
cellular localization, or by protecting substrates from 
ubiquitination. Rad60 family members contain functionally 
enigmatic, integral SUMO-like domains (SLDs). Despite their 
divergence from SUMO, each Rad60 SLD interacts with a subset 
of SUMO pathway enzymes: SLD2 specifically binds the SUMO 
E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO 
E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called 
Siz1 and Siz2) specificity enzymes. Structural analysis 
of Structure 2uyz reveals a mechanistic basis for the near-synonymous 
roles of Rad60 and SUMO in survival of genotoxic 
stress and suggest unprecedented DNA-damage-response functions 
for SLDs in regulating SUMOylation. The Rad60 branch of this 
family is also known as RENi (Rad60-Esc2-Nip45), and biologically 
it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45).
Length=72

 Score = 62.2 bits (152),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 45/72 (63%), Gaps = 1/72 (1%)

Query  1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY  59
           ++I +K   GK + ++V+ + T+  + +  + K GIPP QQ RLIF G++L+   T+ D 
Sbjct  1   IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDL  60

Query  60  NIQKESTLHLVL  71
           +I+   T+ +V+
Sbjct  61  DIEDGDTIDVVI  72


 Score = 62.2 bits (152),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 45/72 (63%), Gaps = 1/72 (1%)

Query  77   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY  135
            ++I +K   GK + ++V+ + T+  + +  + K GIPP QQ RLIF G++L+   T+ D 
Sbjct  1    IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDL  60

Query  136  NIQKESTLHLVL  147
            +I+   T+ +V+
Sbjct  61   DIEDGDTIDVVI  72


 Score = 62.2 bits (152),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 45/72 (63%), Gaps = 1/72 (1%)

Query  153  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY  211
            ++I +K   GK + ++V+ + T+  + +  + K GIPP QQ RLIF G++L+   T+ D 
Sbjct  1    IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDL  60

Query  212  NIQKESTLHLVL  223
            +I+   T+ +V+
Sbjct  61   DIEDGDTIDVVI  72



Lambda      K        H        a         alpha
   0.315    0.135    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00030851

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459726 pfam00240, ubiquitin, Ubiquitin family. This family co...  102     2e-28
CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like...  62.2    3e-13


>CDD:459726 pfam00240, ubiquitin, Ubiquitin family.  This family contains 
a number of ubiquitin-like proteins: SUMO (smt3 homolog), Nedd8, 
Elongin B, Rub1, and Parkin. A number of them are thought 
to carry a distinctive five-residue motif termed the proteasome-interacting 
motif (PIM), which may have a biologically 
significant role in protein delivery to proteasomes and recruitment 
of proteasomes to transcription sites.
Length=72

 Score = 102 bits (257),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 0/72 (0%)

Query  3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ  62
           I VKTL GK ITLEV+ +DT+  +K KI +KEG+PP+QQRLI++GK LED +TL +Y I+
Sbjct  1   ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  63  KESTLHLVLRLR  74
             ST+HLVLR R
Sbjct  61  DGSTIHLVLRQR  72


 Score = 102 bits (257),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 0/72 (0%)

Query  79   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ  138
            I VKTL GK ITLEV+ +DT+  +K KI +KEG+PP+QQRLI++GK LED +TL +Y I+
Sbjct  1    ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  139  KESTLHLVLRLR  150
              ST+HLVLR R
Sbjct  61   DGSTIHLVLRQR  72


 Score = 102 bits (257),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 0/72 (0%)

Query  155  IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ  214
            I VKTL GK ITLEV+ +DT+  +K KI +KEG+PP+QQRLI++GK LED +TL +Y I+
Sbjct  1    ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  215  KESTLHLVLRLR  226
              ST+HLVLR R
Sbjct  61   DGSTIHLVLRQR  72


 Score = 102 bits (257),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 0/72 (0%)

Query  231  IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ  290
            I VKTL GK ITLEV+ +DT+  +K KI +KEG+PP+QQRLI++GK LED +TL +Y I+
Sbjct  1    ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  291  KESTLHLVLRLR  302
              ST+HLVLR R
Sbjct  61   DGSTIHLVLRQR  72


>CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like.  The 
small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, 
and although SUMO-1 shares structural similarity to Ub, 
SUMO's cellular functions remain distinct insomuch as SUMO 
modification alters protein function through changes in activity, 
cellular localization, or by protecting substrates from 
ubiquitination. Rad60 family members contain functionally 
enigmatic, integral SUMO-like domains (SLDs). Despite their 
divergence from SUMO, each Rad60 SLD interacts with a subset 
of SUMO pathway enzymes: SLD2 specifically binds the SUMO 
E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO 
E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called 
Siz1 and Siz2) specificity enzymes. Structural analysis 
of Structure 2uyz reveals a mechanistic basis for the near-synonymous 
roles of Rad60 and SUMO in survival of genotoxic 
stress and suggest unprecedented DNA-damage-response functions 
for SLDs in regulating SUMOylation. The Rad60 branch of this 
family is also known as RENi (Rad60-Esc2-Nip45), and biologically 
it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45).
Length=72

 Score = 62.2 bits (152),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 45/72 (63%), Gaps = 1/72 (1%)

Query  1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY  59
           ++I +K   GK + ++V+ + T+  + +  + K GIPP QQ RLIF G++L+   T+ D 
Sbjct  1   IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDL  60

Query  60  NIQKESTLHLVL  71
           +I+   T+ +V+
Sbjct  61  DIEDGDTIDVVI  72


 Score = 62.2 bits (152),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 45/72 (63%), Gaps = 1/72 (1%)

Query  77   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY  135
            ++I +K   GK + ++V+ + T+  + +  + K GIPP QQ RLIF G++L+   T+ D 
Sbjct  1    IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDL  60

Query  136  NIQKESTLHLVL  147
            +I+   T+ +V+
Sbjct  61   DIEDGDTIDVVI  72


 Score = 62.2 bits (152),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 45/72 (63%), Gaps = 1/72 (1%)

Query  153  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY  211
            ++I +K   GK + ++V+ + T+  + +  + K GIPP QQ RLIF G++L+   T+ D 
Sbjct  1    IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDL  60

Query  212  NIQKESTLHLVL  223
            +I+   T+ +V+
Sbjct  61   DIEDGDTIDVVI  72


 Score = 62.2 bits (152),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 45/72 (63%), Gaps = 1/72 (1%)

Query  229  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY  287
            ++I +K   GK + ++V+ + T+  + +  + K GIPP QQ RLIF G++L+   T+ D 
Sbjct  1    IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDL  60

Query  288  NIQKESTLHLVL  299
            +I+   T+ +V+
Sbjct  61   DIEDGDTIDVVI  72



Lambda      K        H        a         alpha
   0.315    0.135    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00035245

Length=593
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462215 pfam07576, BRAP2, BRCA1-associated protein 2. These pr...  156     3e-46
CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases a...  107     7e-29
CDD:433370 pfam13639, zf-RING_2, Ring finger domain                   59.3    4e-12


>CDD:462215 pfam07576, BRAP2, BRCA1-associated protein 2.  These proteins 
include BRCA1-associated protein 2 (BRAP2), which binds nuclear 
localization signals (NLSs) in vitro and in yeast two-hybrid 
screening. These proteins share a region of sequence similarity 
at their N-terminus. They also have pfam02148 at the 
C-terminus.
Length=93

 Score = 156 bits (396),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 49/92 (53%), Positives = 64/92 (70%), Gaps = 1/92 (1%)

Query  112  EDCTTLCILAVPSYMSPSDFLGFVGETTMDEVSHFRMIRTARANRYMVLMKFRSGKKAKE  171
               T LCILAVP+YMSP+DFL F G + ++ +SH R+IR    NRYMVL+KF     A E
Sbjct  1    GRSTLLCILAVPNYMSPADFLQFCG-SFLEHISHIRIIRDGMENRYMVLIKFDDQNSADE  59

Query  172  WQKEWNGKVFNSMEPETCHVVFVKTVEIQAVN  203
            + +E+NGK F+S+EPE CHV+FVK+VE     
Sbjct  60   FYEEFNGKPFSSLEPEVCHVLFVKSVEYTESA  91


>CDD:460464 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other 
protein.  
Length=63

 Score = 107 bits (269),  Expect = 7e-29, Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 42/63 (67%), Gaps = 0/63 (0%)

Query  323  CSVCRSEVNLWICLICGNVGCGRYDGAHAFAHYKETSHAFAMDLASQRVWSYVGDAYVHR  382
            CS+C +  NLW+CL CG+VGCGRY  +HA  HY+ET H  A++L++  V+ Y  D YVH 
Sbjct  1    CSLCGNTSNLWLCLTCGHVGCGRYQNSHALEHYEETGHPLAVNLSTLTVYCYPCDDYVHD  60

Query  383  IIQ  385
               
Sbjct  61   PSL  63


>CDD:433370 pfam13639, zf-RING_2, Ring finger domain.  
Length=44

 Score = 59.3 bits (144),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 25/44 (57%), Gaps = 2/44 (5%)

Query  260  PTCPVCLERMDETTGLLTILCQHVFHCTCLQKWKGSG--CPVCR  301
              CP+CLE  +E   ++ + C H FH  CL KW  S   CP+CR
Sbjct  1    DECPICLEEFEEGDKVVVLPCGHHFHRECLDKWLRSSNTCPLCR  44



Lambda      K        H        a         alpha
   0.314    0.128    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 748708428


Query= TCONS_00030854

Length=314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459726 pfam00240, ubiquitin, Ubiquitin family. This family co...  103     1e-28
CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like...  62.6    2e-13


>CDD:459726 pfam00240, ubiquitin, Ubiquitin family.  This family contains 
a number of ubiquitin-like proteins: SUMO (smt3 homolog), Nedd8, 
Elongin B, Rub1, and Parkin. A number of them are thought 
to carry a distinctive five-residue motif termed the proteasome-interacting 
motif (PIM), which may have a biologically 
significant role in protein delivery to proteasomes and recruitment 
of proteasomes to transcription sites.
Length=72

 Score = 103 bits (259),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 0/72 (0%)

Query  3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ  62
           I VKTL GK ITLEV+ +DT+  +K KI +KEG+PP+QQRLI++GK LED +TL +Y I+
Sbjct  1   ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  63  KESTLHLVLRLR  74
             ST+HLVLR R
Sbjct  61  DGSTIHLVLRQR  72


 Score = 103 bits (259),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 0/72 (0%)

Query  164  IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ  223
            I VKTL GK ITLEV+ +DT+  +K KI +KEG+PP+QQRLI++GK LED +TL +Y I+
Sbjct  1    ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  224  KESTLHLVLRLR  235
              ST+HLVLR R
Sbjct  61   DGSTIHLVLRQR  72


 Score = 103 bits (259),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 0/72 (0%)

Query  240  IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ  299
            I VKTL GK ITLEV+ +DT+  +K KI +KEG+PP+QQRLI++GK LED +TL +Y I+
Sbjct  1    ITVKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIE  60

Query  300  KESTLHLVLRLR  311
              ST+HLVLR R
Sbjct  61   DGSTIHLVLRQR  72


 Score =  99 bits (250),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 43/70 (61%), Positives = 56/70 (80%), Gaps = 0/70 (0%)

Query  90   VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE  149
            VKTL GK ITLEV+ +DT+  +K KI +KEG+PP+QQRLI++GK LED +TL +Y I+  
Sbjct  3    VKTLDGKKITLEVDPTDTVLELKEKIAEKEGVPPEQQRLIYSGKVLEDDQTLGEYGIEDG  62

Query  150  STLHLVLRLR  159
            ST+HLVLR R
Sbjct  63   STIHLVLRQR  72


>CDD:403255 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like.  The 
small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, 
and although SUMO-1 shares structural similarity to Ub, 
SUMO's cellular functions remain distinct insomuch as SUMO 
modification alters protein function through changes in activity, 
cellular localization, or by protecting substrates from 
ubiquitination. Rad60 family members contain functionally 
enigmatic, integral SUMO-like domains (SLDs). Despite their 
divergence from SUMO, each Rad60 SLD interacts with a subset 
of SUMO pathway enzymes: SLD2 specifically binds the SUMO 
E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO 
E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called 
Siz1 and Siz2) specificity enzymes. Structural analysis 
of Structure 2uyz reveals a mechanistic basis for the near-synonymous 
roles of Rad60 and SUMO in survival of genotoxic 
stress and suggest unprecedented DNA-damage-response functions 
for SLDs in regulating SUMOylation. The Rad60 branch of this 
family is also known as RENi (Rad60-Esc2-Nip45), and biologically 
it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45).
Length=72

 Score = 62.6 bits (153),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 45/72 (63%), Gaps = 1/72 (1%)

Query  1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY  59
           ++I +K   GK + ++V+ + T+  + +  + K GIPP QQ RLIF G++L+   T+ D 
Sbjct  1   IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDL  60

Query  60  NIQKESTLHLVL  71
           +I+   T+ +V+
Sbjct  61  DIEDGDTIDVVI  72


 Score = 62.6 bits (153),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 45/72 (63%), Gaps = 1/72 (1%)

Query  162  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY  220
            ++I +K   GK + ++V+ + T+  + +  + K GIPP QQ RLIF G++L+   T+ D 
Sbjct  1    IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDL  60

Query  221  NIQKESTLHLVL  232
            +I+   T+ +V+
Sbjct  61   DIEDGDTIDVVI  72


 Score = 62.6 bits (153),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 45/72 (63%), Gaps = 1/72 (1%)

Query  238  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY  296
            ++I +K   GK + ++V+ + T+  + +  + K GIPP QQ RLIF G++L+   T+ D 
Sbjct  1    IKIILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDL  60

Query  297  NIQKESTLHLVL  308
            +I+   T+ +V+
Sbjct  61   DIEDGDTIDVVI  72


 Score = 58.0 bits (141),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query  89   VVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDYNIQ  147
            ++K   GK + ++V+ + T+  + +  + K GIPP QQ RLIF G++L+   T+ D +I+
Sbjct  4    ILKGKDGKEVFIKVKPTTTVSKLINAYRKKRGIPPSQQVRLIFDGERLDPNSTVEDLDIE  63

Query  148  KESTLHLVL  156
               T+ +V+
Sbjct  64   DGDTIDVVI  72



Lambda      K        H        a         alpha
   0.314    0.134    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00030856

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.143    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00030857

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00030858

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00030859

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460604 pfam02582, DUF155, Uncharacterized ACR, YagE family CO...  154     2e-45


>CDD:460604 pfam02582, DUF155, Uncharacterized ACR, YagE family COG1723. 
 
Length=173

 Score = 154 bits (392),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 59/146 (40%), Positives = 81/146 (55%), Gaps = 11/146 (8%)

Query  334  MFVFSYGVVVFWNLTERQEKDLLADLAFANSSTTGSRIPLATMPLDEEDFETEEFHFEYS  393
            +FVF YGVVVFWNL+E +EK  L DL           +  A  P      E EE      
Sbjct  1    VFVFRYGVVVFWNLSEEEEKRFLKDL-----------LRFAEEPSIPPLLEEEETEEFDY  49

Query  394  TEISRPRVFNDMITLRSGDHMIKLAISHGIAQSTKLCFFEEVMARQMAEAKDVPRRLAMT  453
               S  R+ ND+I L S D + KLAISH +AQS KL  FEE++ + +   + +P  LA T
Sbjct  50   VYPSESRIQNDIIVLGSDDLLAKLAISHALAQSVKLSVFEELLDKLLESTESIPEELAKT  109

Query  454  GKLGMKREEVFRILGKLFKSRVEVNL  479
            GKL + R+E+ + +G+L   R ++NL
Sbjct  110  GKLKLSRKELLKKIGELLLLRHDINL  135



Lambda      K        H        a         alpha
   0.315    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00030860

Length=444


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00035247

Length=722


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 913835456


Query= TCONS_00035248

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00030862

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00030861

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00035249

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00030864

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.153    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00035250

Length=24


***** No hits found *****



Lambda      K        H        a         alpha
   0.343    0.144    0.523    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 79226976


Query= TCONS_00035251

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.152    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00030865

Length=673
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460888 pfam03343, SART-1, SART-1 family. SART-1 is a protein ...  535     0.0  


>CDD:460888 pfam03343, SART-1, SART-1 family.  SART-1 is a protein involved 
in cell cycle arrest and pre-mRNA splicing. It has been shown 
to be a component of U4/U6 x U5 tri-snRNP complex in human, 
Schizosaccharomyces pombe and Saccharomyces cerevisiae. 
SART-1 is a known tumor antigen in a range of cancers recognized 
by T cells.
Length=569

 Score = 535 bits (1381),  Expect = 0.0, Method: Composition-based stats.
 Identities = 307/573 (54%), Positives = 387/573 (68%), Gaps = 36/573 (6%)

Query  77   EAKNAAIKKARDAAQRARILEGPTLGESGDADMDTKTWLLQAKKRQKKIEKERALKLAQ-  135
            E     IKKAR+  +R   LEG  LGE  D D D K W+ ++KKRQK I K +A +L + 
Sbjct  1    EELKEKIKKAREKRERNAKLEGKGLGED-DEDDDAKAWVKKSKKRQKAIAKAKARELEEE  59

Query  136  ---ELEERERAAEYSTADLAGLKVGHEIGEFEAGEEHVLTLKDTTIDENEEEGDELEDVN  192
               E  E+   AEY++ DLAGLKVGH++ +F  GEE +LTLKDT +  +EEE +    VN
Sbjct  60   LGEEEAEKAAQAEYTSKDLAGLKVGHDLDDFLEGEEQILTLKDTGVLLDEEEDELEN-VN  118

Query  193  LREKEKVAERLELKKRKPVYDPTE------ENTGILAQYDEEIEGKK-RKRFTLDAQGST  245
            L EKEK+ + LELKK+KP YDP +         GIL++YDEEI+GKK +K FTLD QGST
Sbjct  119  LAEKEKLKKNLELKKKKPGYDPYDDDEDGEGEKGILSKYDEEIDGKKKKKGFTLDGQGST  178

Query  246  VEEREAKRQEVSDRLKQNLVSLDLGAIETTPVSDYMDVSE-IKIKKPKKKKVKATRQRPV  304
             EEREA  +E++++LK+ L+SLD   ++  P SDY+D SE  K KKPKKKK K TR++  
Sbjct  179  AEEREALAEEIAEKLKKQLLSLDY--LKLEPASDYLDESEIFKFKKPKKKKKKKTRKKAK  236

Query  305  -DEDDIFSTTESAQNG------AMEVDASNGVPASAPRKWESSENVSFVDDDDLQASLTR  357
             D+D +      A  G       M+VD+    P    R         FVDDDDLQA+L R
Sbjct  237  KDDDLLILFPGEADLGLPSDDDDMDVDSE---PIGVERLTRDVIEN-FVDDDDLQAALAR  292

Query  358  QRRAAFKKRQKVRPEDIARQLREESQTPMDAENEEAEEPGLVIDETSEFVSNLQKPILSE  417
            QRRAA KKR+K+RPEDIARQL+EE +   + E+EE E+ GLVIDETSEFV NL      E
Sbjct  293  QRRAALKKRKKLRPEDIARQLKEEREE--EEEDEEEEDGGLVIDETSEFVRNLGAIPTYE  350

Query  418  RRERRRTTTPAESGKEESVERIKEEPADDDADVDM-ERSYNDIEDEEDLKERIKREDS--  474
            R   RR   P     +E  E  +E+  ++D DVDM + SY D E+EE  +E  + E+S  
Sbjct  351  RAGNRRKPVPVSPVADEEDE--EEDMFEEDGDVDMEDESYEDAEEEEAEEEAREEEESDE  408

Query  475  QLQQISGTGLEEETTLDQGLGATLNMLKQRGLVKPSDAVEHNALLRARQRFLHEKIHLET  534
             L  I+GTGLEEE T+ QGLGATL +L+Q+GL++ S A E     R  Q+FL EK+ LE 
Sbjct  409  DLADITGTGLEEEPTVSQGLGATLALLRQKGLLEESTAEELERERR--QKFLAEKLRLER  466

Query  535  EAEKRARQQRERDRASGKLDRMSAREREEYARWENKQRDQQDARHMAEVFNKEYKPDVQL  594
            E E++AR QRERDRASG+LD+MSAREREEYAR EN+QR+QQ+AR +AE F K+YKPDV+L
Sbjct  467  ELEEQARLQRERDRASGRLDKMSAREREEYARRENRQREQQEARPLAEFFEKDYKPDVKL  526

Query  595  KYVDEFGRLMNQKEAFKHLSHQFHGKGSGKMKT  627
            KYVDEFGR +NQKEAFKHLSHQFHGKGSGKMKT
Sbjct  527  KYVDEFGRELNQKEAFKHLSHQFHGKGSGKMKT  559



Lambda      K        H        a         alpha
   0.307    0.125    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 855378200


Query= TCONS_00030866

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464218 pfam14610, DUF4448, Protein of unknown function (DUF44...  194     1e-61


>CDD:464218 pfam14610, DUF4448, Protein of unknown function (DUF4448).  This 
is a family of predicted membrane glycoproteins from fungi. 
However there appears, visually, to be some similarity with 
the family of GPI-anchored fungal proteins, pfam10342.
Length=185

 Score = 194 bits (494),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 71/185 (38%), Positives = 99/185 (54%), Gaps = 12/185 (6%)

Query  105  TDISSFSGDFPICT----DLNGPIAPFCLPKDGADVTADATYYVTWNADFY-PLNATITI  159
                   G F  CT    + +G  APFC PKDG+++    TYY+TW+ D++ P N T+ I
Sbjct  1    DTTYLGLGPFLRCTPDRYNKDGSSAPFCTPKDGSELYVGKTYYITWDPDYFGPPNTTVRI  60

Query  160  ELRYANSSQGD----SAFTSEKTDNSYGYISLPMQKEWLQGKPYNALTLYIIELDPTSGS  215
             L Y N + G+     AFTS+   NS G+    + K+WLQGK YN LTL ++ L P +  
Sbjct  61   HLSYVNETTGEKGKKQAFTSDWLPNSDGFYPWTVDKDWLQGKSYNNLTLVLVSLQPDNVD  120

Query  216  RASARQGPTVILHPKPVE--HYKPSPRTPFNRT-ALLIGLPVSLGVVIAAVAGLAFGMRK  272
              +  +GPTV L  KP    H    P TP  +  AL I LPV +G ++  + G  F  RK
Sbjct  121  NVTIIKGPTVRLTKKPDLAWHDPSPPPTPPPKGYALAIALPVVVGFLVLGLYGFFFWNRK  180

Query  273  SRKTG  277
            +R+ G
Sbjct  181  TRRIG  185



Lambda      K        H        a         alpha
   0.315    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00030867

Length=310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464218 pfam14610, DUF4448, Protein of unknown function (DUF44...  192     1e-61


>CDD:464218 pfam14610, DUF4448, Protein of unknown function (DUF4448).  This 
is a family of predicted membrane glycoproteins from fungi. 
However there appears, visually, to be some similarity with 
the family of GPI-anchored fungal proteins, pfam10342.
Length=185

 Score = 192 bits (490),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 71/185 (38%), Positives = 99/185 (54%), Gaps = 12/185 (6%)

Query  58   TDISSFSGDFPICT----DLNGPIAPFCLPKDGADVTADATYYVTWNADFY-PLNATITI  112
                   G F  CT    + +G  APFC PKDG+++    TYY+TW+ D++ P N T+ I
Sbjct  1    DTTYLGLGPFLRCTPDRYNKDGSSAPFCTPKDGSELYVGKTYYITWDPDYFGPPNTTVRI  60

Query  113  ELRYANSSQGD----SAFTSEKTDNSYGYISLPMQKEWLQGKPYNALTLYIIELDPTSGS  168
             L Y N + G+     AFTS+   NS G+    + K+WLQGK YN LTL ++ L P +  
Sbjct  61   HLSYVNETTGEKGKKQAFTSDWLPNSDGFYPWTVDKDWLQGKSYNNLTLVLVSLQPDNVD  120

Query  169  RASARQGPTVILHPKPVE--HYKPSPRTPFNRT-ALLIGLPVSLGVVIAAVAGLAFGMRK  225
              +  +GPTV L  KP    H    P TP  +  AL I LPV +G ++  + G  F  RK
Sbjct  121  NVTIIKGPTVRLTKKPDLAWHDPSPPPTPPPKGYALAIALPVVVGFLVLGLYGFFFWNRK  180

Query  226  SRKTG  230
            +R+ G
Sbjct  181  TRRIG  185



Lambda      K        H        a         alpha
   0.316    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 355153814


Query= TCONS_00030868

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  215     1e-70


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 215 bits (550),  Expect = 1e-70, Method: Composition-based stats.
 Identities = 71/199 (36%), Positives = 102/199 (51%), Gaps = 6/199 (3%)

Query  58   RFKIIESTLREGEQFANAFFDTEKKIEIAKALDDFGVDYIELTSPCASEQSRKDCEAICK  117
               I ++TLR+GEQ     F  ++K+ IA+ALD  GVD IE+  P ASE   +   AI K
Sbjct  1    AVAICDTTLRDGEQALGVAFSIDEKLAIARALDAAGVDEIEVGFPAASEDDFEVVRAIAK  60

Query  118  LGLKAKILTHIRCHMDDARVAVE----TGVDGVDVVIGTSSYLREHSHGKDMTYIKNTAI  173
            +   A+IL   R    D + AVE     G   V V I TS   R++  GKD   +   A+
Sbjct  61   VIPHARILVLCRAREHDIKAAVEALKGAGAVRVHVFIATSDLHRKYKLGKDREEVAKRAV  120

Query  174  EVIEFVKSKGIEIRFSSEDSFRSDLVDLLSIYSAVDKVGVNRVGIADTVGCASPRQVYEL  233
              ++  +S+GI++ FS ED+ R+D   L  +  A  + G  R+ I DTVG  +P +  EL
Sbjct  121  AAVKAARSRGIDVEFSPEDASRTDPEFLAEVVEAAIEAGATRINIPDTVGVLTPNEAAEL  180

Query  234  VRVLRGVVS--CDIETHFH  250
            +  L+  V     I  H H
Sbjct  181  ISALKARVPNKAIISVHCH  199



Lambda      K        H        a         alpha
   0.318    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00030869

Length=331


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00035253

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  286     2e-95


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 286 bits (734),  Expect = 2e-95, Method: Composition-based stats.
 Identities = 98/267 (37%), Positives = 141/267 (53%), Gaps = 9/267 (3%)

Query  58   RFKIIESTLREGEQFANAFFDTEKKIEIAKALDDFGVDYIELTSPCASEQSRKDCEAICK  117
               I ++TLR+GEQ     F  ++K+ IA+ALD  GVD IE+  P ASE   +   AI K
Sbjct  1    AVAICDTTLRDGEQALGVAFSIDEKLAIARALDAAGVDEIEVGFPAASEDDFEVVRAIAK  60

Query  118  LGLKAKILTHIRCHMDDARVAVE----TGVDGVDVVIGTSSYLREHSHGKDMTYIKNTAI  173
            +   A+IL   R    D + AVE     G   V V I TS   R++  GKD   +   A+
Sbjct  61   VIPHARILVLCRAREHDIKAAVEALKGAGAVRVHVFIATSDLHRKYKLGKDREEVAKRAV  120

Query  174  EVIEFVKSKGIEIRFSSEDSFRSDLVDLLSIYSAVDKVGVNRVGIADTVGCASPRQVYEL  233
              ++  +S+GI++ FS ED+ R+D   L  +  A  + G  R+ I DTVG  +P +  EL
Sbjct  121  AAVKAARSRGIDVEFSPEDASRTDPEFLAEVVEAAIEAGATRINIPDTVGVLTPNEAAEL  180

Query  234  VRVLRGVVS--CDIETHFHNDTGCAIANAYCALEAGATHIDTSVLGIGERNGITPLGGLM  291
            +  L+  V     I  H HND G A+AN+  A+EAGA  +D +V GIGER G   L   +
Sbjct  181  ISALKARVPNKAIISVHCHNDLGMAVANSLAAVEAGADRVDGTVNGIGERAGNAAL-EEV  239

Query  292  ARMMVADPEYVKSKYKLEKLKDIEDLV  318
            A  +      V +   L++L+ I +LV
Sbjct  240  AAALEGLG--VDTGLDLQRLRSIANLV  264



Lambda      K        H        a         alpha
   0.318    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00030872

Length=299
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  161     1e-48


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 161 bits (409),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 54/156 (35%), Positives = 83/156 (53%), Gaps = 5/156 (3%)

Query  1    MTYIKNTAIEVIEFVKSKGIEIRFSSEDSFRSDLVDLLSIYSAVDKVGVNRVGIADTVGC  60
               +   A+  ++  +S+GI++ FS ED+ R+D   L  +  A  + G  R+ I DTVG 
Sbjct  112  REEVAKRAVAAVKAARSRGIDVEFSPEDASRTDPEFLAEVVEAAIEAGATRINIPDTVGV  171

Query  61   ASPRQVYELVRVLRGVVS--CDIETHFHNDTGCAIANAYCALEAGATHIDTSVLGIGERN  118
             +P +  EL+  L+  V     I  H HND G A+AN+  A+EAGA  +D +V GIGER 
Sbjct  172  LTPNEAAELISALKARVPNKAIISVHCHNDLGMAVANSLAAVEAGADRVDGTVNGIGERA  231

Query  119  GITPLGGLMARMMVADPEYVKSKYKLEKLKDIEDLV  154
            G   L   +A  +      V +   L++L+ I +LV
Sbjct  232  GNAAL-EEVAAALEGLG--VDTGLDLQRLRSIANLV  264



Lambda      K        H        a         alpha
   0.319    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00030870

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  286     2e-95


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 286 bits (734),  Expect = 2e-95, Method: Composition-based stats.
 Identities = 98/267 (37%), Positives = 141/267 (53%), Gaps = 9/267 (3%)

Query  58   RFKIIESTLREGEQFANAFFDTEKKIEIAKALDDFGVDYIELTSPCASEQSRKDCEAICK  117
               I ++TLR+GEQ     F  ++K+ IA+ALD  GVD IE+  P ASE   +   AI K
Sbjct  1    AVAICDTTLRDGEQALGVAFSIDEKLAIARALDAAGVDEIEVGFPAASEDDFEVVRAIAK  60

Query  118  LGLKAKILTHIRCHMDDARVAVE----TGVDGVDVVIGTSSYLREHSHGKDMTYIKNTAI  173
            +   A+IL   R    D + AVE     G   V V I TS   R++  GKD   +   A+
Sbjct  61   VIPHARILVLCRAREHDIKAAVEALKGAGAVRVHVFIATSDLHRKYKLGKDREEVAKRAV  120

Query  174  EVIEFVKSKGIEIRFSSEDSFRSDLVDLLSIYSAVDKVGVNRVGIADTVGCASPRQVYEL  233
              ++  +S+GI++ FS ED+ R+D   L  +  A  + G  R+ I DTVG  +P +  EL
Sbjct  121  AAVKAARSRGIDVEFSPEDASRTDPEFLAEVVEAAIEAGATRINIPDTVGVLTPNEAAEL  180

Query  234  VRVLRGVVS--CDIETHFHNDTGCAIANAYCALEAGATHIDTSVLGIGERNGITPLGGLM  291
            +  L+  V     I  H HND G A+AN+  A+EAGA  +D +V GIGER G   L   +
Sbjct  181  ISALKARVPNKAIISVHCHNDLGMAVANSLAAVEAGADRVDGTVNGIGERAGNAAL-EEV  239

Query  292  ARMMVADPEYVKSKYKLEKLKDIEDLV  318
            A  +      V +   L++L+ I +LV
Sbjct  240  AAALEGLG--VDTGLDLQRLRSIANLV  264



Lambda      K        H        a         alpha
   0.318    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00035254

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  286     2e-95


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 286 bits (734),  Expect = 2e-95, Method: Composition-based stats.
 Identities = 98/267 (37%), Positives = 141/267 (53%), Gaps = 9/267 (3%)

Query  58   RFKIIESTLREGEQFANAFFDTEKKIEIAKALDDFGVDYIELTSPCASEQSRKDCEAICK  117
               I ++TLR+GEQ     F  ++K+ IA+ALD  GVD IE+  P ASE   +   AI K
Sbjct  1    AVAICDTTLRDGEQALGVAFSIDEKLAIARALDAAGVDEIEVGFPAASEDDFEVVRAIAK  60

Query  118  LGLKAKILTHIRCHMDDARVAVE----TGVDGVDVVIGTSSYLREHSHGKDMTYIKNTAI  173
            +   A+IL   R    D + AVE     G   V V I TS   R++  GKD   +   A+
Sbjct  61   VIPHARILVLCRAREHDIKAAVEALKGAGAVRVHVFIATSDLHRKYKLGKDREEVAKRAV  120

Query  174  EVIEFVKSKGIEIRFSSEDSFRSDLVDLLSIYSAVDKVGVNRVGIADTVGCASPRQVYEL  233
              ++  +S+GI++ FS ED+ R+D   L  +  A  + G  R+ I DTVG  +P +  EL
Sbjct  121  AAVKAARSRGIDVEFSPEDASRTDPEFLAEVVEAAIEAGATRINIPDTVGVLTPNEAAEL  180

Query  234  VRVLRGVVS--CDIETHFHNDTGCAIANAYCALEAGATHIDTSVLGIGERNGITPLGGLM  291
            +  L+  V     I  H HND G A+AN+  A+EAGA  +D +V GIGER G   L   +
Sbjct  181  ISALKARVPNKAIISVHCHNDLGMAVANSLAAVEAGADRVDGTVNGIGERAGNAAL-EEV  239

Query  292  ARMMVADPEYVKSKYKLEKLKDIEDLV  318
            A  +      V +   L++L+ I +LV
Sbjct  240  AAALEGLG--VDTGLDLQRLRSIANLV  264



Lambda      K        H        a         alpha
   0.318    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00035255

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  286     2e-95


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 286 bits (734),  Expect = 2e-95, Method: Composition-based stats.
 Identities = 98/267 (37%), Positives = 141/267 (53%), Gaps = 9/267 (3%)

Query  58   RFKIIESTLREGEQFANAFFDTEKKIEIAKALDDFGVDYIELTSPCASEQSRKDCEAICK  117
               I ++TLR+GEQ     F  ++K+ IA+ALD  GVD IE+  P ASE   +   AI K
Sbjct  1    AVAICDTTLRDGEQALGVAFSIDEKLAIARALDAAGVDEIEVGFPAASEDDFEVVRAIAK  60

Query  118  LGLKAKILTHIRCHMDDARVAVE----TGVDGVDVVIGTSSYLREHSHGKDMTYIKNTAI  173
            +   A+IL   R    D + AVE     G   V V I TS   R++  GKD   +   A+
Sbjct  61   VIPHARILVLCRAREHDIKAAVEALKGAGAVRVHVFIATSDLHRKYKLGKDREEVAKRAV  120

Query  174  EVIEFVKSKGIEIRFSSEDSFRSDLVDLLSIYSAVDKVGVNRVGIADTVGCASPRQVYEL  233
              ++  +S+GI++ FS ED+ R+D   L  +  A  + G  R+ I DTVG  +P +  EL
Sbjct  121  AAVKAARSRGIDVEFSPEDASRTDPEFLAEVVEAAIEAGATRINIPDTVGVLTPNEAAEL  180

Query  234  VRVLRGVVS--CDIETHFHNDTGCAIANAYCALEAGATHIDTSVLGIGERNGITPLGGLM  291
            +  L+  V     I  H HND G A+AN+  A+EAGA  +D +V GIGER G   L   +
Sbjct  181  ISALKARVPNKAIISVHCHNDLGMAVANSLAAVEAGADRVDGTVNGIGERAGNAAL-EEV  239

Query  292  ARMMVADPEYVKSKYKLEKLKDIEDLV  318
            A  +      V +   L++L+ I +LV
Sbjct  240  AAALEGLG--VDTGLDLQRLRSIANLV  264



Lambda      K        H        a         alpha
   0.318    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00035256

Length=169
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  132     2e-39


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 132 bits (335),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 44/116 (38%), Positives = 59/116 (51%), Gaps = 4/116 (3%)

Query  58   RFKIIESTLREGEQFANAFFDTEKKIEIAKALDDFGVDYIELTSPCASEQSRKDCEAICK  117
               I ++TLR+GEQ     F  ++K+ IA+ALD  GVD IE+  P ASE   +   AI K
Sbjct  1    AVAICDTTLRDGEQALGVAFSIDEKLAIARALDAAGVDEIEVGFPAASEDDFEVVRAIAK  60

Query  118  LGLKAKILTHIRCHMDDARVAVE----TGVDGVDVVIGTSSYLREHSHGKDMTYIK  169
            +   A+IL   R    D + AVE     G   V V I TS   R++  GKD   + 
Sbjct  61   VIPHARILVLCRAREHDIKAAVEALKGAGAVRVHVFIATSDLHRKYKLGKDREEVA  116



Lambda      K        H        a         alpha
   0.316    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00030871

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  90.9    8e-24


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 90.9 bits (226),  Expect = 8e-24, Method: Composition-based stats.
 Identities = 27/66 (41%), Positives = 38/66 (58%), Gaps = 0/66 (0%)

Query  58   RFKIIESTLREGEQFANAFFDTEKKIEIAKALDDFGVDYIELTSPCASEQSRKDCEAICK  117
               I ++TLR+GEQ     F  ++K+ IA+ALD  GVD IE+  P ASE   +   AI K
Sbjct  1    AVAICDTTLRDGEQALGVAFSIDEKLAIARALDAAGVDEIEVGFPAASEDDFEVVRAIAK  60

Query  118  LGLKAK  123
            +   A+
Sbjct  61   VIPHAR  66



Lambda      K        H        a         alpha
   0.317    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00035258

Length=299
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  161     1e-48


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 161 bits (409),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 54/156 (35%), Positives = 83/156 (53%), Gaps = 5/156 (3%)

Query  1    MTYIKNTAIEVIEFVKSKGIEIRFSSEDSFRSDLVDLLSIYSAVDKVGVNRVGIADTVGC  60
               +   A+  ++  +S+GI++ FS ED+ R+D   L  +  A  + G  R+ I DTVG 
Sbjct  112  REEVAKRAVAAVKAARSRGIDVEFSPEDASRTDPEFLAEVVEAAIEAGATRINIPDTVGV  171

Query  61   ASPRQVYELVRVLRGVVS--CDIETHFHNDTGCAIANAYCALEAGATHIDTSVLGIGERN  118
             +P +  EL+  L+  V     I  H HND G A+AN+  A+EAGA  +D +V GIGER 
Sbjct  172  LTPNEAAELISALKARVPNKAIISVHCHNDLGMAVANSLAAVEAGADRVDGTVNGIGERA  231

Query  119  GITPLGGLMARMMVADPEYVKSKYKLEKLKDIEDLV  154
            G   L   +A  +      V +   L++L+ I +LV
Sbjct  232  GNAAL-EEVAAALEGLG--VDTGLDLQRLRSIANLV  264



Lambda      K        H        a         alpha
   0.319    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00035257

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459902 pfam00682, HMGL-like, HMGL-like. This family contains ...  286     3e-95


>CDD:459902 pfam00682, HMGL-like, HMGL-like.  This family contains a diverse 
set of enzymes. These include various aldolases and a region 
of pyruvate carboxylase.
Length=264

 Score = 286 bits (733),  Expect = 3e-95, Method: Composition-based stats.
 Identities = 98/267 (37%), Positives = 142/267 (53%), Gaps = 9/267 (3%)

Query  58   RFKIIESTLREGEQFANAFFDTEKKIEIAKALDDFGVDYIELTSPCASEQSRKDCEAICK  117
               I ++TLR+GEQ     F  ++K+ IA+ALD  GVD IE+  P ASE   +   AI K
Sbjct  1    AVAICDTTLRDGEQALGVAFSIDEKLAIARALDAAGVDEIEVGFPAASEDDFEVVRAIAK  60

Query  118  LGLKAKILTHIRCHMDDARVAVE----TGVDGVYVVIGTSSYLREHSHGKDMTYIKNTAI  173
            +   A+IL   R    D + AVE     G   V+V I TS   R++  GKD   +   A+
Sbjct  61   VIPHARILVLCRAREHDIKAAVEALKGAGAVRVHVFIATSDLHRKYKLGKDREEVAKRAV  120

Query  174  EVIEFVKSKGIEIRFSSEDSFRSDLVDLLSIYSAVDKVGVNRVGIADTVGCASPRQVYEL  233
              ++  +S+GI++ FS ED+ R+D   L  +  A  + G  R+ I DTVG  +P +  EL
Sbjct  121  AAVKAARSRGIDVEFSPEDASRTDPEFLAEVVEAAIEAGATRINIPDTVGVLTPNEAAEL  180

Query  234  VRVLRGVVS--CDIETHFHNDTGCAIANAYCALEAGATHIDTSVLGIGERNGITPLGGLM  291
            +  L+  V     I  H HND G A+AN+  A+EAGA  +D +V GIGER G   L   +
Sbjct  181  ISALKARVPNKAIISVHCHNDLGMAVANSLAAVEAGADRVDGTVNGIGERAGNAAL-EEV  239

Query  292  ARMMVADPEYVKSKYKLEKLKDIEDLV  318
            A  +      V +   L++L+ I +LV
Sbjct  240  AAALEGLG--VDTGLDLQRLRSIANLV  264



Lambda      K        H        a         alpha
   0.318    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00035259

Length=758
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428738 pfam06046, Sec6, Exocyst complex component Sec6. Sec6 ...  560     0.0  


>CDD:428738 pfam06046, Sec6, Exocyst complex component Sec6.  Sec6 is a component 
of the multiprotein exocyst complex. Sec6 interacts 
with Sec8, Sec10 and Exo70.These exocyst proteins localize 
to regions of active exocytosis-at the growing ends of interphase 
cells and in the medial region of cells undergoing cytokinesis-in 
an F-actin-dependent and exocytosis- independent 
manner.
Length=570

 Score = 560 bits (1446),  Expect = 0.0, Method: Composition-based stats.
 Identities = 208/588 (35%), Positives = 323/588 (55%), Gaps = 31/588 (5%)

Query  183  FQGLDSVIDWFDEHLGTACMNLIPLVQSDNRSMVVRLGVIVMTEEKNDATVRALQEAQKD  242
            F  +D +I+ FD+ L     NL+ LV+  N S+VVRL  IV  EEK D    AL+EA K 
Sbjct  1    FSKVDGLIEKFDKLLWEIIRNLLELVREGNTSLVVRLARIVEREEKEDEKAEALREATKG  60

Query  243  HQDLAGRFKSMNIGPKTVRGYKEKLLQAIELYAENQFRETKEAFLGDPENLDK--SFKWY  300
            H+D+A RF S+N+  +  RGYK+K L+A+E   E +F E +E F  D + L+   +  W 
Sbjct  61   HKDMATRF-SINVFRRRPRGYKDKFLEALEESVEERFEECREKFSEDDKKLELLYNLDWV  119

Query  301  FNDLFSVQQGMQALLPKRWKIYKTYTNIYHRMMHDFLIDLINDPDLPADNLLAILHWSEK  360
            F+DL  V+  +  L P  WKI+KTY NIYH  +HD L +L++  +L A ++LAIL W + 
Sbjct  120  FDDLIVVKDLLAPLFPPHWKIFKTYANIYHNALHDLLQELVDSEELEAADILAILSWVKT  179

Query  361  YYKKMKK----LGWKQSELQPNILDDREPELIRQWQNIIIKAVEEWMERITETDRKGLVE  416
            YY KM K    L +  S+L P + D+   EL   + ++I+  + EW++ + ET+ K   E
Sbjct  180  YYSKMMKGNPELEFDISDLGPLLGDEVLEELEDDYLSLIVNKMREWLDNLLETEVKDFTE  239

Query  417  RIPDSLDTNAEGYFRTKTLPDMWRMLHEQIVASGASSRTDVVEGIIDAMFRVLKSRQTNW  476
            R     + + +GY+      D+++ML EQ+  +  S +  ++ G+++ + + L+SRQ  W
Sbjct  240  REEPP-EEDLDGYYHLPLPVDVFQMLAEQVDVAADSLQAKILVGVLEELAKFLRSRQDAW  298

Query  477  QMLIDEECGKYKAQGGDQLEGLQLLQDWLIAVANDQIACIDDNDESGQLGYLSKFKRDFE  536
              L++EE  KY     +  E    L ++LIA+ANDQ+ C D         Y     + +E
Sbjct  299  IELLEEELKKY--MSVNNNESPPGLVEYLIALANDQLKCAD---------YAESLLQKYE  347

Query  537  PSVDPNYMASRATPELDALRDGYVDLSTYCLTQFVELVFAVDFRTTIPDFFTQKWYGDFA  596
                P     R + E + L DG VDLS  C++  ++++F  D +  +   FT+KWY    
Sbjct  348  ----PLKYEERISDEFEELLDGLVDLSKECISALLDIIFN-DLQPALSKLFTKKWYTGEV  402

Query  597  IKRITSTFEDYMTDYSAVLHPSLTDILVEELSDELLIRYLSSVRNKGVKF-KRHVDPYTD  655
            +++I  T EDY+ DY   LHP L   L+EEL DEL++ YL ++R K +KF     + + +
Sbjct  403  MEQIVETVEDYLNDYKEYLHPPLFQELLEELLDELVVEYLRALRGKRLKFGAEKQEQFAE  462

Query  656  KLKDDVLTVFAFFQKYPDSFAS-IKQKWRLVDWLLRLLEAEKGPALVAVYEDFKTEYWDL  714
            K+K D   ++ FF K     A+ + Q  R ++ LL LLE E   A+   YE   + Y D+
Sbjct  463  KMKRDAEQLYDFFSKLGSRDAAWLLQALRAIEDLLELLELEDPDAVPLEYETLLSSYPDI  522

Query  715  QLSWVEAVLRTRDDFERSMISAIKTKAAEL-----SIERGTETLMSRV  757
             L  VEAVL+ R D ++SM+ A+  +  E+     S      T+ SRV
Sbjct  523  SLDHVEAVLKARGDLDKSMVKALLQQLREIKKSYESGVEPPRTIFSRV  570



Lambda      K        H        a         alpha
   0.319    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 966220928


Query= TCONS_00035260

Length=340


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00030873

Length=758
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428738 pfam06046, Sec6, Exocyst complex component Sec6. Sec6 ...  560     0.0  


>CDD:428738 pfam06046, Sec6, Exocyst complex component Sec6.  Sec6 is a component 
of the multiprotein exocyst complex. Sec6 interacts 
with Sec8, Sec10 and Exo70.These exocyst proteins localize 
to regions of active exocytosis-at the growing ends of interphase 
cells and in the medial region of cells undergoing cytokinesis-in 
an F-actin-dependent and exocytosis- independent 
manner.
Length=570

 Score = 560 bits (1446),  Expect = 0.0, Method: Composition-based stats.
 Identities = 208/588 (35%), Positives = 323/588 (55%), Gaps = 31/588 (5%)

Query  183  FQGLDSVIDWFDEHLGTACMNLIPLVQSDNRSMVVRLGVIVMTEEKNDATVRALQEAQKD  242
            F  +D +I+ FD+ L     NL+ LV+  N S+VVRL  IV  EEK D    AL+EA K 
Sbjct  1    FSKVDGLIEKFDKLLWEIIRNLLELVREGNTSLVVRLARIVEREEKEDEKAEALREATKG  60

Query  243  HQDLAGRFKSMNIGPKTVRGYKEKLLQAIELYAENQFRETKEAFLGDPENLDK--SFKWY  300
            H+D+A RF S+N+  +  RGYK+K L+A+E   E +F E +E F  D + L+   +  W 
Sbjct  61   HKDMATRF-SINVFRRRPRGYKDKFLEALEESVEERFEECREKFSEDDKKLELLYNLDWV  119

Query  301  FNDLFSVQQGMQALLPKRWKIYKTYTNIYHRMMHDFLIDLINDPDLPADNLLAILHWSEK  360
            F+DL  V+  +  L P  WKI+KTY NIYH  +HD L +L++  +L A ++LAIL W + 
Sbjct  120  FDDLIVVKDLLAPLFPPHWKIFKTYANIYHNALHDLLQELVDSEELEAADILAILSWVKT  179

Query  361  YYKKMKK----LGWKQSELQPNILDDREPELIRQWQNIIIKAVEEWMERITETDRKGLVE  416
            YY KM K    L +  S+L P + D+   EL   + ++I+  + EW++ + ET+ K   E
Sbjct  180  YYSKMMKGNPELEFDISDLGPLLGDEVLEELEDDYLSLIVNKMREWLDNLLETEVKDFTE  239

Query  417  RIPDSLDTNAEGYFRTKTLPDMWRMLHEQIVASGASSRTDVVEGIIDAMFRVLKSRQTNW  476
            R     + + +GY+      D+++ML EQ+  +  S +  ++ G+++ + + L+SRQ  W
Sbjct  240  REEPP-EEDLDGYYHLPLPVDVFQMLAEQVDVAADSLQAKILVGVLEELAKFLRSRQDAW  298

Query  477  QMLIDEECGKYKAQGGDQLEGLQLLQDWLIAVANDQIACIDDNDESGQLGYLSKFKRDFE  536
              L++EE  KY     +  E    L ++LIA+ANDQ+ C D         Y     + +E
Sbjct  299  IELLEEELKKY--MSVNNNESPPGLVEYLIALANDQLKCAD---------YAESLLQKYE  347

Query  537  PSVDPNYMASRATPELDALRDGYVDLSTYCLTQFVELVFAVDFRTTIPDFFTQKWYGDFA  596
                P     R + E + L DG VDLS  C++  ++++F  D +  +   FT+KWY    
Sbjct  348  ----PLKYEERISDEFEELLDGLVDLSKECISALLDIIFN-DLQPALSKLFTKKWYTGEV  402

Query  597  IKRITSTFEDYMTDYSAVLHPSLTDILVEELSDELLIRYLSSVRNKGVKF-KRHVDPYTD  655
            +++I  T EDY+ DY   LHP L   L+EEL DEL++ YL ++R K +KF     + + +
Sbjct  403  MEQIVETVEDYLNDYKEYLHPPLFQELLEELLDELVVEYLRALRGKRLKFGAEKQEQFAE  462

Query  656  KLKDDVLTVFAFFQKYPDSFAS-IKQKWRLVDWLLRLLEAEKGPALVAVYEDFKTEYWDL  714
            K+K D   ++ FF K     A+ + Q  R ++ LL LLE E   A+   YE   + Y D+
Sbjct  463  KMKRDAEQLYDFFSKLGSRDAAWLLQALRAIEDLLELLELEDPDAVPLEYETLLSSYPDI  522

Query  715  QLSWVEAVLRTRDDFERSMISAIKTKAAEL-----SIERGTETLMSRV  757
             L  VEAVL+ R D ++SM+ A+  +  E+     S      T+ SRV
Sbjct  523  SLDHVEAVLKARGDLDKSMVKALLQQLREIKKSYESGVEPPRTIFSRV  570



Lambda      K        H        a         alpha
   0.319    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 966220928


Query= TCONS_00035261

Length=250


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00030875

Length=758
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428738 pfam06046, Sec6, Exocyst complex component Sec6. Sec6 ...  560     0.0  


>CDD:428738 pfam06046, Sec6, Exocyst complex component Sec6.  Sec6 is a component 
of the multiprotein exocyst complex. Sec6 interacts 
with Sec8, Sec10 and Exo70.These exocyst proteins localize 
to regions of active exocytosis-at the growing ends of interphase 
cells and in the medial region of cells undergoing cytokinesis-in 
an F-actin-dependent and exocytosis- independent 
manner.
Length=570

 Score = 560 bits (1446),  Expect = 0.0, Method: Composition-based stats.
 Identities = 208/588 (35%), Positives = 323/588 (55%), Gaps = 31/588 (5%)

Query  183  FQGLDSVIDWFDEHLGTACMNLIPLVQSDNRSMVVRLGVIVMTEEKNDATVRALQEAQKD  242
            F  +D +I+ FD+ L     NL+ LV+  N S+VVRL  IV  EEK D    AL+EA K 
Sbjct  1    FSKVDGLIEKFDKLLWEIIRNLLELVREGNTSLVVRLARIVEREEKEDEKAEALREATKG  60

Query  243  HQDLAGRFKSMNIGPKTVRGYKEKLLQAIELYAENQFRETKEAFLGDPENLDK--SFKWY  300
            H+D+A RF S+N+  +  RGYK+K L+A+E   E +F E +E F  D + L+   +  W 
Sbjct  61   HKDMATRF-SINVFRRRPRGYKDKFLEALEESVEERFEECREKFSEDDKKLELLYNLDWV  119

Query  301  FNDLFSVQQGMQALLPKRWKIYKTYTNIYHRMMHDFLIDLINDPDLPADNLLAILHWSEK  360
            F+DL  V+  +  L P  WKI+KTY NIYH  +HD L +L++  +L A ++LAIL W + 
Sbjct  120  FDDLIVVKDLLAPLFPPHWKIFKTYANIYHNALHDLLQELVDSEELEAADILAILSWVKT  179

Query  361  YYKKMKK----LGWKQSELQPNILDDREPELIRQWQNIIIKAVEEWMERITETDRKGLVE  416
            YY KM K    L +  S+L P + D+   EL   + ++I+  + EW++ + ET+ K   E
Sbjct  180  YYSKMMKGNPELEFDISDLGPLLGDEVLEELEDDYLSLIVNKMREWLDNLLETEVKDFTE  239

Query  417  RIPDSLDTNAEGYFRTKTLPDMWRMLHEQIVASGASSRTDVVEGIIDAMFRVLKSRQTNW  476
            R     + + +GY+      D+++ML EQ+  +  S +  ++ G+++ + + L+SRQ  W
Sbjct  240  REEPP-EEDLDGYYHLPLPVDVFQMLAEQVDVAADSLQAKILVGVLEELAKFLRSRQDAW  298

Query  477  QMLIDEECGKYKAQGGDQLEGLQLLQDWLIAVANDQIACIDDNDESGQLGYLSKFKRDFE  536
              L++EE  KY     +  E    L ++LIA+ANDQ+ C D         Y     + +E
Sbjct  299  IELLEEELKKY--MSVNNNESPPGLVEYLIALANDQLKCAD---------YAESLLQKYE  347

Query  537  PSVDPNYMASRATPELDALRDGYVDLSTYCLTQFVELVFAVDFRTTIPDFFTQKWYGDFA  596
                P     R + E + L DG VDLS  C++  ++++F  D +  +   FT+KWY    
Sbjct  348  ----PLKYEERISDEFEELLDGLVDLSKECISALLDIIFN-DLQPALSKLFTKKWYTGEV  402

Query  597  IKRITSTFEDYMTDYSAVLHPSLTDILVEELSDELLIRYLSSVRNKGVKF-KRHVDPYTD  655
            +++I  T EDY+ DY   LHP L   L+EEL DEL++ YL ++R K +KF     + + +
Sbjct  403  MEQIVETVEDYLNDYKEYLHPPLFQELLEELLDELVVEYLRALRGKRLKFGAEKQEQFAE  462

Query  656  KLKDDVLTVFAFFQKYPDSFAS-IKQKWRLVDWLLRLLEAEKGPALVAVYEDFKTEYWDL  714
            K+K D   ++ FF K     A+ + Q  R ++ LL LLE E   A+   YE   + Y D+
Sbjct  463  KMKRDAEQLYDFFSKLGSRDAAWLLQALRAIEDLLELLELEDPDAVPLEYETLLSSYPDI  522

Query  715  QLSWVEAVLRTRDDFERSMISAIKTKAAEL-----SIERGTETLMSRV  757
             L  VEAVL+ R D ++SM+ A+  +  E+     S      T+ SRV
Sbjct  523  SLDHVEAVLKARGDLDKSMVKALLQQLREIKKSYESGVEPPRTIFSRV  570



Lambda      K        H        a         alpha
   0.319    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 966220928


Query= TCONS_00035262

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00030876

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.323    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00030877

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00030878

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00030879

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00030880

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00030881

Length=853
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461125 pfam04003, Utp12, Dip2/Utp12 Family. This domain is fo...  89.1    8e-22


>CDD:461125 pfam04003, Utp12, Dip2/Utp12 Family.  This domain is found at 
the C-terminus of proteins containing WD40 repeats. These proteins 
are part of the U3 ribonucleoprotein the yeast protein 
is called Utp12 or DIP2.
Length=106

 Score = 89.1 bits (222),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 37/104 (36%), Positives = 52/104 (50%), Gaps = 1/104 (1%)

Query  579  NDNGMLESCFHTGDLTIVRETIQRLDSSLAATLLQKLAERLSSRPGRYGHLLVWVQWTCV  638
            ND  +LES       + +  T+ RL  S    LL+ LAERL+ R      LL W+++   
Sbjct  1    NDEYLLESVLEKIPPSDIELTLLRLPFSYVLRLLKFLAERLAERSPHLELLLRWLKFLLR  60

Query  639  AHGGALAGKPELLKRMSTLFKVMDQRSSSLSSLLLL-KGKLDML  681
             HGG L   P+L   + +L K++ +R   L  LL L  G LD L
Sbjct  61   THGGYLVSNPDLRPVLRSLQKLLRRRLKELKDLLGLNLGALDYL  104



Lambda      K        H        a         alpha
   0.308    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1088119612


Query= TCONS_00030882

Length=853
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461125 pfam04003, Utp12, Dip2/Utp12 Family. This domain is fo...  89.1    8e-22


>CDD:461125 pfam04003, Utp12, Dip2/Utp12 Family.  This domain is found at 
the C-terminus of proteins containing WD40 repeats. These proteins 
are part of the U3 ribonucleoprotein the yeast protein 
is called Utp12 or DIP2.
Length=106

 Score = 89.1 bits (222),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 37/104 (36%), Positives = 52/104 (50%), Gaps = 1/104 (1%)

Query  579  NDNGMLESCFHTGDLTIVRETIQRLDSSLAATLLQKLAERLSSRPGRYGHLLVWVQWTCV  638
            ND  +LES       + +  T+ RL  S    LL+ LAERL+ R      LL W+++   
Sbjct  1    NDEYLLESVLEKIPPSDIELTLLRLPFSYVLRLLKFLAERLAERSPHLELLLRWLKFLLR  60

Query  639  AHGGALAGKPELLKRMSTLFKVMDQRSSSLSSLLLL-KGKLDML  681
             HGG L   P+L   + +L K++ +R   L  LL L  G LD L
Sbjct  61   THGGYLVSNPDLRPVLRSLQKLLRRRLKELKDLLGLNLGALDYL  104



Lambda      K        H        a         alpha
   0.308    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1088119612


Query= TCONS_00030883

Length=345


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00030885

Length=458


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 564403072


Query= TCONS_00030884

Length=535


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00030886

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00035263

Length=535


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00035264

Length=535


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00030887

Length=535


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00030892

Length=208


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00030888

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00030889

Length=291


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00030890

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00030891

Length=238


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00035266

Length=382


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00035267

Length=361


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00030893

Length=361


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0754    0.140     1.90     42.6     43.6 

Effective search space used: 429423540


Query= TCONS_00035268

Length=238


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00030894

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00030895

Length=238


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00030897

Length=870
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  205     4e-62


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 205 bits (525),  Expect = 4e-62, Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 107/169 (63%), Gaps = 1/169 (1%)

Query  481  KAIRRDLGARTSYSRYFVSQGNQDGLFGLCKAYALYDEAVGYAQGMNFIVMPLL-FNMDE  539
            + I +D+     +S +F +   Q+ L  + KAY++Y+  VGY QGMNFI  PLL   +DE
Sbjct  10   EQIEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVYLDE  69

Query  540  AEAFTLLVKLMNKYGLREMFINDMPGLHRNLYVFERLLEDWEPALYCHLRRRGVHPQLYA  599
             +AF   V L+  Y LR+ +  D PGL R+LYVFE LL+   P LY HL+  G+ P L+A
Sbjct  70   EDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFA  129

Query  600  TQWFLTLFAYRFPLQLVLRIYDLIFEEGLESTILKFAIAIMRRNAETLL  648
            +QWFLTLFA  FPL  VLRI+D  F EG +  + + A+AI++R  E LL
Sbjct  130  SQWFLTLFAREFPLSTVLRIWDYFFLEGEKFVLFRVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.310    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1112523350


Query= TCONS_00030896

Length=870
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  205     4e-62


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 205 bits (525),  Expect = 4e-62, Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 107/169 (63%), Gaps = 1/169 (1%)

Query  481  KAIRRDLGARTSYSRYFVSQGNQDGLFGLCKAYALYDEAVGYAQGMNFIVMPLL-FNMDE  539
            + I +D+     +S +F +   Q+ L  + KAY++Y+  VGY QGMNFI  PLL   +DE
Sbjct  10   EQIEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVYLDE  69

Query  540  AEAFTLLVKLMNKYGLREMFINDMPGLHRNLYVFERLLEDWEPALYCHLRRRGVHPQLYA  599
             +AF   V L+  Y LR+ +  D PGL R+LYVFE LL+   P LY HL+  G+ P L+A
Sbjct  70   EDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFA  129

Query  600  TQWFLTLFAYRFPLQLVLRIYDLIFEEGLESTILKFAIAIMRRNAETLL  648
            +QWFLTLFA  FPL  VLRI+D  F EG +  + + A+AI++R  E LL
Sbjct  130  SQWFLTLFAREFPLSTVLRIWDYFFLEGEKFVLFRVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.310    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1112523350


Query= TCONS_00030898

Length=858
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  205     3e-62


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 205 bits (525),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 107/169 (63%), Gaps = 1/169 (1%)

Query  481  KAIRRDLGARTSYSRYFVSQGNQDGLFGLCKAYALYDEAVGYAQGMNFIVMPLL-FNMDE  539
            + I +D+     +S +F +   Q+ L  + KAY++Y+  VGY QGMNFI  PLL   +DE
Sbjct  10   EQIEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVYLDE  69

Query  540  AEAFTLLVKLMNKYGLREMFINDMPGLHRNLYVFERLLEDWEPALYCHLRRRGVHPQLYA  599
             +AF   V L+  Y LR+ +  D PGL R+LYVFE LL+   P LY HL+  G+ P L+A
Sbjct  70   EDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFA  129

Query  600  TQWFLTLFAYRFPLQLVLRIYDLIFEEGLESTILKFAIAIMRRNAETLL  648
            +QWFLTLFA  FPL  VLRI+D  F EG +  + + A+AI++R  E LL
Sbjct  130  SQWFLTLFAREFPLSTVLRIWDYFFLEGEKFVLFRVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.310    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1095297182


Query= TCONS_00030899

Length=870
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identifi...  205     4e-62


>CDD:459855 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain.  Identification 
of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase 
activator proteins of yeast Ypt6 and Ypt7, implies that 
these domains are GTPase activator proteins of Rab-like small 
GTPases.
Length=178

 Score = 205 bits (525),  Expect = 4e-62, Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 107/169 (63%), Gaps = 1/169 (1%)

Query  481  KAIRRDLGARTSYSRYFVSQGNQDGLFGLCKAYALYDEAVGYAQGMNFIVMPLL-FNMDE  539
            + I +D+     +S +F +   Q+ L  + KAY++Y+  VGY QGMNFI  PLL   +DE
Sbjct  10   EQIEKDVPRTFPHSFFFDNGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVYLDE  69

Query  540  AEAFTLLVKLMNKYGLREMFINDMPGLHRNLYVFERLLEDWEPALYCHLRRRGVHPQLYA  599
             +AF   V L+  Y LR+ +  D PGL R+LYVFE LL+   P LY HL+  G+ P L+A
Sbjct  70   EDAFWCFVSLLENYLLRDFYTPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFA  129

Query  600  TQWFLTLFAYRFPLQLVLRIYDLIFEEGLESTILKFAIAIMRRNAETLL  648
            +QWFLTLFA  FPL  VLRI+D  F EG +  + + A+AI++R  E LL
Sbjct  130  SQWFLTLFAREFPLSTVLRIWDYFFLEGEKFVLFRVALAILKRFREELL  178



Lambda      K        H        a         alpha
   0.310    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1112523350


Query= TCONS_00035269

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00030901

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00030900

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00030903

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00030902

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00035270

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00030904

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461721 pfam05712, MRG, MRG. This family consists of three dif...  263     3e-89


>CDD:461721 pfam05712, MRG, MRG.  This family consists of three different 
eukaryotic proteins (mortality factor 4 (MORF4/MRG15), male-specific 
lethal 3(MSL-3) and ESA1-associated factor 3(EAF3)). 
It is thought that the MRG family is involved in transcriptional 
regulation via histone acetylation. It contains 2 chromo 
domains and a leucine zipper motif.
Length=185

 Score = 263 bits (674),  Expect = 3e-89, Method: Composition-based stats.
 Identities = 104/180 (58%), Positives = 132/180 (73%), Gaps = 6/180 (3%)

Query  124  RARDNEIEKEEHFYTRPSVRIVMPDNLKSLLVDDWENVTKNQQVVALPAKASVNQILEDF  183
            RARD+E   E+ F  RP +++ +PD LK +LVDDWEN+TKN Q+V LPAK  V++ILED+
Sbjct  1    RARDSE--SEDEFSKRPEIKLDIPDELKKILVDDWENITKNNQLVPLPAKPPVDEILEDY  58

Query  184  VAEEKPKRTSSA----DLDVLEEVIMGIKEYFDKALDKILLYRFEREQYKALRKKWEAGS  239
            V  EK KR + +    D D+LEEV+ G++EYFDKAL +ILLYRFER QY  LRKKW +G 
Sbjct  59   VEHEKVKRANGSNKTRDEDLLEEVVAGLREYFDKALGRILLYRFERPQYAELRKKWASGP  118

Query  240  GEYSEKGPLDVYGAEHLTRLFATMPELIAQTNMDLQSTNRLREELSKFTLWLSKNSDKYF  299
             +   K P D+YGAEHL RLF  +PEL+AQTNMD QS NRLRE L  F  +L+KN ++YF
Sbjct  119  NDDQGKEPSDIYGAEHLLRLFVKLPELLAQTNMDEQSLNRLREHLEDFLEFLAKNHERYF  178



Lambda      K        H        a         alpha
   0.314    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00030905

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461721 pfam05712, MRG, MRG. This family consists of three dif...  244     3e-82


>CDD:461721 pfam05712, MRG, MRG.  This family consists of three different 
eukaryotic proteins (mortality factor 4 (MORF4/MRG15), male-specific 
lethal 3(MSL-3) and ESA1-associated factor 3(EAF3)). 
It is thought that the MRG family is involved in transcriptional 
regulation via histone acetylation. It contains 2 chromo 
domains and a leucine zipper motif.
Length=185

 Score = 244 bits (624),  Expect = 3e-82, Method: Composition-based stats.
 Identities = 99/169 (59%), Positives = 123/169 (73%), Gaps = 6/169 (4%)

Query  124  RARDNEIEKEEHFYTRPSVRIVMPDNLKSLLVDDWENVTKNQQVVALPAKASVNQILEDF  183
            RARD+E   E+ F  RP +++ +PD LK +LVDDWEN+TKN Q+V LPAK  V++ILED+
Sbjct  1    RARDSE--SEDEFSKRPEIKLDIPDELKKILVDDWENITKNNQLVPLPAKPPVDEILEDY  58

Query  184  VAEEKPKRTSSA----DLDVLEEVIMGIKEYFDKALDKILLYRFEREQYKALRKKWEAGS  239
            V  EK KR + +    D D+LEEV+ G++EYFDKAL +ILLYRFER QY  LRKKW +G 
Sbjct  59   VEHEKVKRANGSNKTRDEDLLEEVVAGLREYFDKALGRILLYRFERPQYAELRKKWASGP  118

Query  240  GEYSEKGPLDVYGAEHLTRLFATMPELIAQTNMDLQSTNRLREELSKFT  288
             +   K P D+YGAEHL RLF  +PEL+AQTNMD QS NRLRE L  F 
Sbjct  119  NDDQGKEPSDIYGAEHLLRLFVKLPELLAQTNMDEQSLNRLREHLEDFL  167



Lambda      K        H        a         alpha
   0.314    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00030906

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461721 pfam05712, MRG, MRG. This family consists of three dif...  204     2e-66


>CDD:461721 pfam05712, MRG, MRG.  This family consists of three different 
eukaryotic proteins (mortality factor 4 (MORF4/MRG15), male-specific 
lethal 3(MSL-3) and ESA1-associated factor 3(EAF3)). 
It is thought that the MRG family is involved in transcriptional 
regulation via histone acetylation. It contains 2 chromo 
domains and a leucine zipper motif.
Length=185

 Score = 204 bits (521),  Expect = 2e-66, Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 103/141 (73%), Gaps = 6/141 (4%)

Query  124  RARDNEIEKEEHFYTRPSVRIVMPDNLKSLLVDDWENVTKNQQVVALPAKASVNQILEDF  183
            RARD+E   E+ F  RP +++ +PD LK +LVDDWEN+TKN Q+V LPAK  V++ILED+
Sbjct  1    RARDSE--SEDEFSKRPEIKLDIPDELKKILVDDWENITKNNQLVPLPAKPPVDEILEDY  58

Query  184  VAEEKPKRTSSA----DLDVLEEVIMGIKEYFDKALDKILLYRFEREQYKALRKKWEAGS  239
            V  EK KR + +    D D+LEEV+ G++EYFDKAL +ILLYRFER QY  LRKKW +G 
Sbjct  59   VEHEKVKRANGSNKTRDEDLLEEVVAGLREYFDKALGRILLYRFERPQYAELRKKWASGP  118

Query  240  GEYSEKGPLDVYGAEHLTRLF  260
             +   K P D+YGAEHL RLF
Sbjct  119  NDDQGKEPSDIYGAEHLLRLF  139



Lambda      K        H        a         alpha
   0.314    0.131    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00030907

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461721 pfam05712, MRG, MRG. This family consists of three dif...  263     3e-89


>CDD:461721 pfam05712, MRG, MRG.  This family consists of three different 
eukaryotic proteins (mortality factor 4 (MORF4/MRG15), male-specific 
lethal 3(MSL-3) and ESA1-associated factor 3(EAF3)). 
It is thought that the MRG family is involved in transcriptional 
regulation via histone acetylation. It contains 2 chromo 
domains and a leucine zipper motif.
Length=185

 Score = 263 bits (674),  Expect = 3e-89, Method: Composition-based stats.
 Identities = 104/180 (58%), Positives = 132/180 (73%), Gaps = 6/180 (3%)

Query  124  RARDNEIEKEEHFYTRPSVRIVMPDNLKSLLVDDWENVTKNQQVVALPAKASVNQILEDF  183
            RARD+E   E+ F  RP +++ +PD LK +LVDDWEN+TKN Q+V LPAK  V++ILED+
Sbjct  1    RARDSE--SEDEFSKRPEIKLDIPDELKKILVDDWENITKNNQLVPLPAKPPVDEILEDY  58

Query  184  VAEEKPKRTSSA----DLDVLEEVIMGIKEYFDKALDKILLYRFEREQYKALRKKWEAGS  239
            V  EK KR + +    D D+LEEV+ G++EYFDKAL +ILLYRFER QY  LRKKW +G 
Sbjct  59   VEHEKVKRANGSNKTRDEDLLEEVVAGLREYFDKALGRILLYRFERPQYAELRKKWASGP  118

Query  240  GEYSEKGPLDVYGAEHLTRLFATMPELIAQTNMDLQSTNRLREELSKFTLWLSKNSDKYF  299
             +   K P D+YGAEHL RLF  +PEL+AQTNMD QS NRLRE L  F  +L+KN ++YF
Sbjct  119  NDDQGKEPSDIYGAEHLLRLFVKLPELLAQTNMDEQSLNRLREHLEDFLEFLAKNHERYF  178



Lambda      K        H        a         alpha
   0.314    0.128    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00030908

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404283 pfam13373, DUF2407_C, DUF2407 C-terminal domain. This ...  202     3e-66
CDD:370959 pfam10302, DUF2407, DUF2407 ubiquitin-like domain. Thi...  167     3e-53


>CDD:404283 pfam13373, DUF2407_C, DUF2407 C-terminal domain.  This is a family 
of proteins found in fungi. The function is not known. 
There is a characteristic GFDRL sequence motif.
Length=141

 Score = 202 bits (515),  Expect = 3e-66, Method: Composition-based stats.
 Identities = 71/141 (50%), Positives = 97/141 (69%), Gaps = 6/141 (4%)

Query  172  RGFDRLLSAGFTPSEVSALRSQFMAIQSVSRTPDTMPTGAELRELEDRWMDEGSSAMAAG  231
            RGFDRLLSAGF+P+EV+ALR QF +I S   TPDTMP+   LR+LE+RWMD G++A  A 
Sbjct  1    RGFDRLLSAGFSPAEVNALRLQFRSIYSSRHTPDTMPSPDTLRQLEERWMDSGANASGAA  60

Query  232  V-PGGGEGISFADDDGGF-----GAGSRGAMDDMLWGAVMGFFWPVGCAMWLRREEGVWS  285
            +    G G       GG      G+ + G +DD+LWG ++GFF P+G  +WL REEGVW+
Sbjct  61   LAGAPGGGGGGGGGGGGGFGGDDGSDNSGHLDDLLWGLLIGFFLPLGALVWLLREEGVWN  120

Query  286  WRKGLAVFVGVVINVAFGAMR  306
             R+ +AV  GV++N++FG +R
Sbjct  121  KRQKMAVIAGVLVNISFGLVR  141


>CDD:370959 pfam10302, DUF2407, DUF2407 ubiquitin-like domain.  This is a 
family of proteins found in fungi. The function is not known. 
This domain is related to the ubiquitin domain.
Length=101

 Score = 167 bits (426),  Expect = 3e-53, Method: Composition-based stats.
 Identities = 68/107 (64%), Positives = 76/107 (71%), Gaps = 6/107 (6%)

Query  22   LLLTVRFSASIPDFPLDIENPDITTAAGLKQLIRTHLPPNLSSHRLRLIYAGRGLEDATP  81
            L L +RFSASIPD PLDI +P+ TT AGLKQLIR  LPP LS+ RLRLIYAGR L D T 
Sbjct  1    LFLVIRFSASIPDLPLDINDPNTTTIAGLKQLIRERLPPELSNRRLRLIYAGRLLNDTTT  60

Query  82   LSVSLKLPPSPSRTPVVQEDATTVKGKGKAPIREQPRLYIHCSIGDI  128
            L+ SLKLPP            +  KGKGKAP+REQ R+YIHCSIGD 
Sbjct  61   LARSLKLPPPVHDA------LSQSKGKGKAPVREQSRIYIHCSIGDE  101



Lambda      K        H        a         alpha
   0.318    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00035272

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00030909

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404283 pfam13373, DUF2407_C, DUF2407 C-terminal domain. This ...  202     3e-66
CDD:370959 pfam10302, DUF2407, DUF2407 ubiquitin-like domain. Thi...  167     3e-53


>CDD:404283 pfam13373, DUF2407_C, DUF2407 C-terminal domain.  This is a family 
of proteins found in fungi. The function is not known. 
There is a characteristic GFDRL sequence motif.
Length=141

 Score = 202 bits (515),  Expect = 3e-66, Method: Composition-based stats.
 Identities = 71/141 (50%), Positives = 97/141 (69%), Gaps = 6/141 (4%)

Query  172  RGFDRLLSAGFTPSEVSALRSQFMAIQSVSRTPDTMPTGAELRELEDRWMDEGSSAMAAG  231
            RGFDRLLSAGF+P+EV+ALR QF +I S   TPDTMP+   LR+LE+RWMD G++A  A 
Sbjct  1    RGFDRLLSAGFSPAEVNALRLQFRSIYSSRHTPDTMPSPDTLRQLEERWMDSGANASGAA  60

Query  232  V-PGGGEGISFADDDGGF-----GAGSRGAMDDMLWGAVMGFFWPVGCAMWLRREEGVWS  285
            +    G G       GG      G+ + G +DD+LWG ++GFF P+G  +WL REEGVW+
Sbjct  61   LAGAPGGGGGGGGGGGGGFGGDDGSDNSGHLDDLLWGLLIGFFLPLGALVWLLREEGVWN  120

Query  286  WRKGLAVFVGVVINVAFGAMR  306
             R+ +AV  GV++N++FG +R
Sbjct  121  KRQKMAVIAGVLVNISFGLVR  141


>CDD:370959 pfam10302, DUF2407, DUF2407 ubiquitin-like domain.  This is a 
family of proteins found in fungi. The function is not known. 
This domain is related to the ubiquitin domain.
Length=101

 Score = 167 bits (426),  Expect = 3e-53, Method: Composition-based stats.
 Identities = 68/107 (64%), Positives = 76/107 (71%), Gaps = 6/107 (6%)

Query  22   LLLTVRFSASIPDFPLDIENPDITTAAGLKQLIRTHLPPNLSSHRLRLIYAGRGLEDATP  81
            L L +RFSASIPD PLDI +P+ TT AGLKQLIR  LPP LS+ RLRLIYAGR L D T 
Sbjct  1    LFLVIRFSASIPDLPLDINDPNTTTIAGLKQLIRERLPPELSNRRLRLIYAGRLLNDTTT  60

Query  82   LSVSLKLPPSPSRTPVVQEDATTVKGKGKAPIREQPRLYIHCSIGDI  128
            L+ SLKLPP            +  KGKGKAP+REQ R+YIHCSIGD 
Sbjct  61   LARSLKLPPPVHDA------LSQSKGKGKAPVREQSRIYIHCSIGDE  101



Lambda      K        H        a         alpha
   0.318    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00030910

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426304 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthe...  66.1    2e-14


>CDD:426304 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis.  This 
family is involved in iron-sulphur cluster biosynthesis. 
Its members include proteins that are involved in nitrogen 
fixation such as the HesB and HesB-like proteins.
Length=111

 Score = 66.1 bits (162),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 33/108 (31%), Positives = 55/108 (51%), Gaps = 11/108 (10%)

Query  142  MKLTPLAVEQLRKLLSQPDPKFIRVGVKNRG-------CS-GLAYHLEYVEKP-GAFDEV  192
            + +T  A E+L+KLL   D K +R+ V + G       CS G  + L  V++P   +DEV
Sbjct  3    ITITDAAAERLKKLL-AGDKKELRLDVDDGGGPYSKGGCSIGGKFSLVLVDEPDPDYDEV  61

Query  193  VEQDGVKVLIDSKAL-FSIIGSEMDWQEDKLSRKFVFRNPNISESLSF  239
            +E +G  + +DS +L F   G  +D+ ED  +      N N+  ++  
Sbjct  62   IESNGGPIYVDSYSLPFLDEGLTLDFVEDLGTLGLKSDNGNLDGNVGC  109



Lambda      K        H        a         alpha
   0.315    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00035273

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404283 pfam13373, DUF2407_C, DUF2407 C-terminal domain. This ...  202     3e-66
CDD:370959 pfam10302, DUF2407, DUF2407 ubiquitin-like domain. Thi...  167     3e-53


>CDD:404283 pfam13373, DUF2407_C, DUF2407 C-terminal domain.  This is a family 
of proteins found in fungi. The function is not known. 
There is a characteristic GFDRL sequence motif.
Length=141

 Score = 202 bits (515),  Expect = 3e-66, Method: Composition-based stats.
 Identities = 71/141 (50%), Positives = 97/141 (69%), Gaps = 6/141 (4%)

Query  172  RGFDRLLSAGFTPSEVSALRSQFMAIQSVSRTPDTMPTGAELRELEDRWMDEGSSAMAAG  231
            RGFDRLLSAGF+P+EV+ALR QF +I S   TPDTMP+   LR+LE+RWMD G++A  A 
Sbjct  1    RGFDRLLSAGFSPAEVNALRLQFRSIYSSRHTPDTMPSPDTLRQLEERWMDSGANASGAA  60

Query  232  V-PGGGEGISFADDDGGF-----GAGSRGAMDDMLWGAVMGFFWPVGCAMWLRREEGVWS  285
            +    G G       GG      G+ + G +DD+LWG ++GFF P+G  +WL REEGVW+
Sbjct  61   LAGAPGGGGGGGGGGGGGFGGDDGSDNSGHLDDLLWGLLIGFFLPLGALVWLLREEGVWN  120

Query  286  WRKGLAVFVGVVINVAFGAMR  306
             R+ +AV  GV++N++FG +R
Sbjct  121  KRQKMAVIAGVLVNISFGLVR  141


>CDD:370959 pfam10302, DUF2407, DUF2407 ubiquitin-like domain.  This is a 
family of proteins found in fungi. The function is not known. 
This domain is related to the ubiquitin domain.
Length=101

 Score = 167 bits (426),  Expect = 3e-53, Method: Composition-based stats.
 Identities = 68/107 (64%), Positives = 76/107 (71%), Gaps = 6/107 (6%)

Query  22   LLLTVRFSASIPDFPLDIENPDITTAAGLKQLIRTHLPPNLSSHRLRLIYAGRGLEDATP  81
            L L +RFSASIPD PLDI +P+ TT AGLKQLIR  LPP LS+ RLRLIYAGR L D T 
Sbjct  1    LFLVIRFSASIPDLPLDINDPNTTTIAGLKQLIRERLPPELSNRRLRLIYAGRLLNDTTT  60

Query  82   LSVSLKLPPSPSRTPVVQEDATTVKGKGKAPIREQPRLYIHCSIGDI  128
            L+ SLKLPP            +  KGKGKAP+REQ R+YIHCSIGD 
Sbjct  61   LARSLKLPPPVHDA------LSQSKGKGKAPVREQSRIYIHCSIGDE  101



Lambda      K        H        a         alpha
   0.318    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00035274

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426304 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthe...  66.1    2e-14


>CDD:426304 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis.  This 
family is involved in iron-sulphur cluster biosynthesis. 
Its members include proteins that are involved in nitrogen 
fixation such as the HesB and HesB-like proteins.
Length=111

 Score = 66.1 bits (162),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 33/108 (31%), Positives = 55/108 (51%), Gaps = 11/108 (10%)

Query  142  MKLTPLAVEQLRKLLSQPDPKFIRVGVKNRG-------CS-GLAYHLEYVEKP-GAFDEV  192
            + +T  A E+L+KLL   D K +R+ V + G       CS G  + L  V++P   +DEV
Sbjct  3    ITITDAAAERLKKLL-AGDKKELRLDVDDGGGPYSKGGCSIGGKFSLVLVDEPDPDYDEV  61

Query  193  VEQDGVKVLIDSKAL-FSIIGSEMDWQEDKLSRKFVFRNPNISESLSF  239
            +E +G  + +DS +L F   G  +D+ ED  +      N N+  ++  
Sbjct  62   IESNGGPIYVDSYSLPFLDEGLTLDFVEDLGTLGLKSDNGNLDGNVGC  109



Lambda      K        H        a         alpha
   0.315    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00035275

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426304 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthe...  73.1    3e-17


>CDD:426304 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis.  This 
family is involved in iron-sulphur cluster biosynthesis. 
Its members include proteins that are involved in nitrogen 
fixation such as the HesB and HesB-like proteins.
Length=111

 Score = 73.1 bits (180),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 11/109 (10%)

Query  142  MKLTPLAVEQLRKLLSQPDPKFIRVGVKNRG-------CS-GLAYHLEYVEKP-GAFDEV  192
            + +T  A E+L+KLL   D K +R+ V + G       CS G  + L  V++P   +DEV
Sbjct  3    ITITDAAAERLKKLL-AGDKKELRLDVDDGGGPYSKGGCSIGGKFSLVLVDEPDPDYDEV  61

Query  193  VEQDGVKVLIDSKAL-FSIIGSEMDWQEDKLSRKFVFRNPNIKEQCGCG  240
            +E +G  + +DS +L F   G  +D+ ED  +      N N+    GCG
Sbjct  62   IESNGGPIYVDSYSLPFLDEGLTLDFVEDLGTLGLKSDNGNLDGNVGCG  110



Lambda      K        H        a         alpha
   0.315    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00030911

Length=69
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399217 pfam06068, TIP49, TIP49 C-terminus. This family consis...  94.7    8e-26


>CDD:399217 pfam06068, TIP49, TIP49 C-terminus.  This family consists of 
the C-terminal region of several eukaryotic and archaeal RuvB-like 
1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) 
proteins. The N-terminal domain contains the pfam00004 domain. 
In zebrafish, the liebeskummer (lik) mutation, causes 
development of hyperplastic embryonic hearts. lik encodes Reptin, 
a component of a DNA-stimulated ATPase complex. Beta-catenin 
and Pontin, a DNA-stimulated ATPase that is often part 
of complexes with Reptin, are in the same genetic pathways. 
The Reptin/Pontin ratio serves to regulate heart growth during 
development, at least in part via the beta-catenin pathway. 
TBP-interacting protein 49 (TIP49) was originally identified 
as a TBP-binding protein, and two related proteins are 
encoded by individual genes, tip49a and b. Although the function 
of this gene family has not been elucidated, they are 
supposed to play a critical role in nuclear events because they 
interact with various kinds of nuclear factors and have 
DNA helicase activities.TIP49a has been suggested to act as 
an autoantigen in some patients with autoimmune diseases.
Length=347

 Score = 94.7 bits (236),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 46/60 (77%), Gaps = 7/60 (12%)

Query  1    MANARPQGGQDVMSMMGQLMKPKKTEITDKLRQEINKVVNRYIDQGVAELVPGVLFIDEV  60
            +ANARPQ    ++S+      PKK EIT +LR+EINK VN++I++G AE+VPGVLFIDEV
Sbjct  231  VANARPQ---GILSLF----SPKKGEITSELREEINKKVNKWIEEGKAEIVPGVLFIDEV  283



Lambda      K        H        a         alpha
   0.321    0.138    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00030912

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426304 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthe...  66.1    2e-14


>CDD:426304 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis.  This 
family is involved in iron-sulphur cluster biosynthesis. 
Its members include proteins that are involved in nitrogen 
fixation such as the HesB and HesB-like proteins.
Length=111

 Score = 66.1 bits (162),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 33/108 (31%), Positives = 55/108 (51%), Gaps = 11/108 (10%)

Query  142  MKLTPLAVEQLRKLLSQPDPKFIRVGVKNRG-------CS-GLAYHLEYVEKP-GAFDEV  192
            + +T  A E+L+KLL   D K +R+ V + G       CS G  + L  V++P   +DEV
Sbjct  3    ITITDAAAERLKKLL-AGDKKELRLDVDDGGGPYSKGGCSIGGKFSLVLVDEPDPDYDEV  61

Query  193  VEQDGVKVLIDSKAL-FSIIGSEMDWQEDKLSRKFVFRNPNISESLSF  239
            +E +G  + +DS +L F   G  +D+ ED  +      N N+  ++  
Sbjct  62   IESNGGPIYVDSYSLPFLDEGLTLDFVEDLGTLGLKSDNGNLDGNVGC  109



Lambda      K        H        a         alpha
   0.315    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00035277

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404283 pfam13373, DUF2407_C, DUF2407 C-terminal domain. This ...  202     3e-66
CDD:370959 pfam10302, DUF2407, DUF2407 ubiquitin-like domain. Thi...  167     3e-53


>CDD:404283 pfam13373, DUF2407_C, DUF2407 C-terminal domain.  This is a family 
of proteins found in fungi. The function is not known. 
There is a characteristic GFDRL sequence motif.
Length=141

 Score = 202 bits (515),  Expect = 3e-66, Method: Composition-based stats.
 Identities = 71/141 (50%), Positives = 97/141 (69%), Gaps = 6/141 (4%)

Query  172  RGFDRLLSAGFTPSEVSALRSQFMAIQSVSRTPDTMPTGAELRELEDRWMDEGSSAMAAG  231
            RGFDRLLSAGF+P+EV+ALR QF +I S   TPDTMP+   LR+LE+RWMD G++A  A 
Sbjct  1    RGFDRLLSAGFSPAEVNALRLQFRSIYSSRHTPDTMPSPDTLRQLEERWMDSGANASGAA  60

Query  232  V-PGGGEGISFADDDGGF-----GAGSRGAMDDMLWGAVMGFFWPVGCAMWLRREEGVWS  285
            +    G G       GG      G+ + G +DD+LWG ++GFF P+G  +WL REEGVW+
Sbjct  61   LAGAPGGGGGGGGGGGGGFGGDDGSDNSGHLDDLLWGLLIGFFLPLGALVWLLREEGVWN  120

Query  286  WRKGLAVFVGVVINVAFGAMR  306
             R+ +AV  GV++N++FG +R
Sbjct  121  KRQKMAVIAGVLVNISFGLVR  141


>CDD:370959 pfam10302, DUF2407, DUF2407 ubiquitin-like domain.  This is a 
family of proteins found in fungi. The function is not known. 
This domain is related to the ubiquitin domain.
Length=101

 Score = 167 bits (426),  Expect = 3e-53, Method: Composition-based stats.
 Identities = 68/107 (64%), Positives = 76/107 (71%), Gaps = 6/107 (6%)

Query  22   LLLTVRFSASIPDFPLDIENPDITTAAGLKQLIRTHLPPNLSSHRLRLIYAGRGLEDATP  81
            L L +RFSASIPD PLDI +P+ TT AGLKQLIR  LPP LS+ RLRLIYAGR L D T 
Sbjct  1    LFLVIRFSASIPDLPLDINDPNTTTIAGLKQLIRERLPPELSNRRLRLIYAGRLLNDTTT  60

Query  82   LSVSLKLPPSPSRTPVVQEDATTVKGKGKAPIREQPRLYIHCSIGDI  128
            L+ SLKLPP            +  KGKGKAP+REQ R+YIHCSIGD 
Sbjct  61   LARSLKLPPPVHDA------LSQSKGKGKAPVREQSRIYIHCSIGDE  101



Lambda      K        H        a         alpha
   0.318    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00035278

Length=69
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399217 pfam06068, TIP49, TIP49 C-terminus. This family consis...  94.7    8e-26


>CDD:399217 pfam06068, TIP49, TIP49 C-terminus.  This family consists of 
the C-terminal region of several eukaryotic and archaeal RuvB-like 
1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) 
proteins. The N-terminal domain contains the pfam00004 domain. 
In zebrafish, the liebeskummer (lik) mutation, causes 
development of hyperplastic embryonic hearts. lik encodes Reptin, 
a component of a DNA-stimulated ATPase complex. Beta-catenin 
and Pontin, a DNA-stimulated ATPase that is often part 
of complexes with Reptin, are in the same genetic pathways. 
The Reptin/Pontin ratio serves to regulate heart growth during 
development, at least in part via the beta-catenin pathway. 
TBP-interacting protein 49 (TIP49) was originally identified 
as a TBP-binding protein, and two related proteins are 
encoded by individual genes, tip49a and b. Although the function 
of this gene family has not been elucidated, they are 
supposed to play a critical role in nuclear events because they 
interact with various kinds of nuclear factors and have 
DNA helicase activities.TIP49a has been suggested to act as 
an autoantigen in some patients with autoimmune diseases.
Length=347

 Score = 94.7 bits (236),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 46/60 (77%), Gaps = 7/60 (12%)

Query  1    MANARPQGGQDVMSMMGQLMKPKKTEITDKLRQEINKVVNRYIDQGVAELVPGVLFIDEV  60
            +ANARPQ    ++S+      PKK EIT +LR+EINK VN++I++G AE+VPGVLFIDEV
Sbjct  231  VANARPQ---GILSLF----SPKKGEITSELREEINKKVNKWIEEGKAEIVPGVLFIDEV  283



Lambda      K        H        a         alpha
   0.321    0.138    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00030913

Length=69
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399217 pfam06068, TIP49, TIP49 C-terminus. This family consis...  94.7    8e-26


>CDD:399217 pfam06068, TIP49, TIP49 C-terminus.  This family consists of 
the C-terminal region of several eukaryotic and archaeal RuvB-like 
1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) 
proteins. The N-terminal domain contains the pfam00004 domain. 
In zebrafish, the liebeskummer (lik) mutation, causes 
development of hyperplastic embryonic hearts. lik encodes Reptin, 
a component of a DNA-stimulated ATPase complex. Beta-catenin 
and Pontin, a DNA-stimulated ATPase that is often part 
of complexes with Reptin, are in the same genetic pathways. 
The Reptin/Pontin ratio serves to regulate heart growth during 
development, at least in part via the beta-catenin pathway. 
TBP-interacting protein 49 (TIP49) was originally identified 
as a TBP-binding protein, and two related proteins are 
encoded by individual genes, tip49a and b. Although the function 
of this gene family has not been elucidated, they are 
supposed to play a critical role in nuclear events because they 
interact with various kinds of nuclear factors and have 
DNA helicase activities.TIP49a has been suggested to act as 
an autoantigen in some patients with autoimmune diseases.
Length=347

 Score = 94.7 bits (236),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 46/60 (77%), Gaps = 7/60 (12%)

Query  1    MANARPQGGQDVMSMMGQLMKPKKTEITDKLRQEINKVVNRYIDQGVAELVPGVLFIDEV  60
            +ANARPQ    ++S+      PKK EIT +LR+EINK VN++I++G AE+VPGVLFIDEV
Sbjct  231  VANARPQ---GILSLF----SPKKGEITSELREEINKKVNKWIEEGKAEIVPGVLFIDEV  283



Lambda      K        H        a         alpha
   0.321    0.138    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00030915

Length=69
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399217 pfam06068, TIP49, TIP49 C-terminus. This family consis...  94.7    8e-26


>CDD:399217 pfam06068, TIP49, TIP49 C-terminus.  This family consists of 
the C-terminal region of several eukaryotic and archaeal RuvB-like 
1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) 
proteins. The N-terminal domain contains the pfam00004 domain. 
In zebrafish, the liebeskummer (lik) mutation, causes 
development of hyperplastic embryonic hearts. lik encodes Reptin, 
a component of a DNA-stimulated ATPase complex. Beta-catenin 
and Pontin, a DNA-stimulated ATPase that is often part 
of complexes with Reptin, are in the same genetic pathways. 
The Reptin/Pontin ratio serves to regulate heart growth during 
development, at least in part via the beta-catenin pathway. 
TBP-interacting protein 49 (TIP49) was originally identified 
as a TBP-binding protein, and two related proteins are 
encoded by individual genes, tip49a and b. Although the function 
of this gene family has not been elucidated, they are 
supposed to play a critical role in nuclear events because they 
interact with various kinds of nuclear factors and have 
DNA helicase activities.TIP49a has been suggested to act as 
an autoantigen in some patients with autoimmune diseases.
Length=347

 Score = 94.7 bits (236),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 46/60 (77%), Gaps = 7/60 (12%)

Query  1    MANARPQGGQDVMSMMGQLMKPKKTEITDKLRQEINKVVNRYIDQGVAELVPGVLFIDEV  60
            +ANARPQ    ++S+      PKK EIT +LR+EINK VN++I++G AE+VPGVLFIDEV
Sbjct  231  VANARPQ---GILSLF----SPKKGEITSELREEINKKVNKWIEEGKAEIVPGVLFIDEV  283



Lambda      K        H        a         alpha
   0.321    0.138    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00030914

Length=69
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399217 pfam06068, TIP49, TIP49 C-terminus. This family consis...  94.7    8e-26


>CDD:399217 pfam06068, TIP49, TIP49 C-terminus.  This family consists of 
the C-terminal region of several eukaryotic and archaeal RuvB-like 
1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) 
proteins. The N-terminal domain contains the pfam00004 domain. 
In zebrafish, the liebeskummer (lik) mutation, causes 
development of hyperplastic embryonic hearts. lik encodes Reptin, 
a component of a DNA-stimulated ATPase complex. Beta-catenin 
and Pontin, a DNA-stimulated ATPase that is often part 
of complexes with Reptin, are in the same genetic pathways. 
The Reptin/Pontin ratio serves to regulate heart growth during 
development, at least in part via the beta-catenin pathway. 
TBP-interacting protein 49 (TIP49) was originally identified 
as a TBP-binding protein, and two related proteins are 
encoded by individual genes, tip49a and b. Although the function 
of this gene family has not been elucidated, they are 
supposed to play a critical role in nuclear events because they 
interact with various kinds of nuclear factors and have 
DNA helicase activities.TIP49a has been suggested to act as 
an autoantigen in some patients with autoimmune diseases.
Length=347

 Score = 94.7 bits (236),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 46/60 (77%), Gaps = 7/60 (12%)

Query  1    MANARPQGGQDVMSMMGQLMKPKKTEITDKLRQEINKVVNRYIDQGVAELVPGVLFIDEV  60
            +ANARPQ    ++S+      PKK EIT +LR+EINK VN++I++G AE+VPGVLFIDEV
Sbjct  231  VANARPQ---GILSLF----SPKKGEITSELREEINKKVNKWIEEGKAEIVPGVLFIDEV  283



Lambda      K        H        a         alpha
   0.321    0.138    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00030916

Length=423


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00030917

Length=69
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399217 pfam06068, TIP49, TIP49 C-terminus. This family consis...  94.7    8e-26


>CDD:399217 pfam06068, TIP49, TIP49 C-terminus.  This family consists of 
the C-terminal region of several eukaryotic and archaeal RuvB-like 
1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) 
proteins. The N-terminal domain contains the pfam00004 domain. 
In zebrafish, the liebeskummer (lik) mutation, causes 
development of hyperplastic embryonic hearts. lik encodes Reptin, 
a component of a DNA-stimulated ATPase complex. Beta-catenin 
and Pontin, a DNA-stimulated ATPase that is often part 
of complexes with Reptin, are in the same genetic pathways. 
The Reptin/Pontin ratio serves to regulate heart growth during 
development, at least in part via the beta-catenin pathway. 
TBP-interacting protein 49 (TIP49) was originally identified 
as a TBP-binding protein, and two related proteins are 
encoded by individual genes, tip49a and b. Although the function 
of this gene family has not been elucidated, they are 
supposed to play a critical role in nuclear events because they 
interact with various kinds of nuclear factors and have 
DNA helicase activities.TIP49a has been suggested to act as 
an autoantigen in some patients with autoimmune diseases.
Length=347

 Score = 94.7 bits (236),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 46/60 (77%), Gaps = 7/60 (12%)

Query  1    MANARPQGGQDVMSMMGQLMKPKKTEITDKLRQEINKVVNRYIDQGVAELVPGVLFIDEV  60
            +ANARPQ    ++S+      PKK EIT +LR+EINK VN++I++G AE+VPGVLFIDEV
Sbjct  231  VANARPQ---GILSLF----SPKKGEITSELREEINKKVNKWIEEGKAEIVPGVLFIDEV  283



Lambda      K        H        a         alpha
   0.321    0.138    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0904    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00035279

Length=69
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399217 pfam06068, TIP49, TIP49 C-terminus. This family consis...  94.7    8e-26


>CDD:399217 pfam06068, TIP49, TIP49 C-terminus.  This family consists of 
the C-terminal region of several eukaryotic and archaeal RuvB-like 
1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) 
proteins. The N-terminal domain contains the pfam00004 domain. 
In zebrafish, the liebeskummer (lik) mutation, causes 
development of hyperplastic embryonic hearts. lik encodes Reptin, 
a component of a DNA-stimulated ATPase complex. Beta-catenin 
and Pontin, a DNA-stimulated ATPase that is often part 
of complexes with Reptin, are in the same genetic pathways. 
The Reptin/Pontin ratio serves to regulate heart growth during 
development, at least in part via the beta-catenin pathway. 
TBP-interacting protein 49 (TIP49) was originally identified 
as a TBP-binding protein, and two related proteins are 
encoded by individual genes, tip49a and b. Although the function 
of this gene family has not been elucidated, they are 
supposed to play a critical role in nuclear events because they 
interact with various kinds of nuclear factors and have 
DNA helicase activities.TIP49a has been suggested to act as 
an autoantigen in some patients with autoimmune diseases.
Length=347

 Score = 94.7 bits (236),  Expect = 8e-26, Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 46/60 (77%), Gaps = 7/60 (12%)

Query  1    MANARPQGGQDVMSMMGQLMKPKKTEITDKLRQEINKVVNRYIDQGVAELVPGVLFIDEV  60
            +ANARPQ    ++S+      PKK EIT +LR+EINK VN++I++G AE+VPGVLFIDEV
Sbjct  231  VANARPQ---GILSLF----SPKKGEITSELREEINKKVNKWIEEGKAEIVPGVLFIDEV  283



Lambda      K        H        a         alpha
   0.321    0.138    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00030918

Length=152
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460585 pfam02544, Steroid_dh, 3-oxo-5-alpha-steroid 4-dehydro...  107     5e-31


>CDD:460585 pfam02544, Steroid_dh, 3-oxo-5-alpha-steroid 4-dehydrogenase. 
 This family consists of 3-oxo-5-alpha-steroid 4-dehydrogenases, 
EC:1.3.99.5 Also known as Steroid 5-alpha-reductase, the 
reaction catalyzed by this enzyme is: 3-oxo-5-alpha-steroid 
+ acceptor <=> 3-oxo-delta(4)-steroid + reduced acceptor. 
The Steroid 5-alpha-reductase enzyme is responsible for the 
formation of dihydrotestosterone, this hormone promotes the 
differentiation of male external genitalia and the prostate 
during fetal development. In humans mutations in this enzyme 
can cause a form of male pseudohermaphorditism in which the 
external genitalia and prostate fail to develop normally. 
A related enzyme is also found in plants is DET2, a steroid 
reductase from Arabidopsis. Mutations in this enzyme cause defects 
in light-regulated development.
Length=150

 Score = 107 bits (268),  Expect = 5e-31, Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 75/154 (49%), Gaps = 8/154 (5%)

Query  1    MPVRHIFRNSAHYWVLAGFNIAYWV--FRPDAGAATNEPNPALLYSGLTLFVFGELANLN  58
            MP+  + +  A +  L G     +   ++P A     +P       G+ LFV G L N+ 
Sbjct  3    MPLTIVAKAFA-FCTLNGLIQGRYNSYYQPYAEDWVTDPR---FLIGIGLFVTGMLINIK  58

Query  59   THLVLRDLRRPGTTERGIPTGFGFNLVTCPNYLFEIIAWIGVYLVSGMSWSVLFFITIGG  118
            + ++LR LR+PG T   IP G  F LV+CPNY  EI+ WIG  L +  S   L F     
Sbjct  59   SDIILRTLRKPGNTGYKIPRGGLFELVSCPNYFGEIMEWIGYALAT-WSLPALAFAFFTV  117

Query  119  STMASWAAKKERRYRKEFGDKYKRKRFVIIPGIF  152
              +   A    + Y K+F +KY + R  +IP +F
Sbjct  118  CNLTPRAKAHHKWYLKKF-EKYPKSRKALIPFVF  150



Lambda      K        H        a         alpha
   0.328    0.144    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00030919

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459953 pfam00830, Ribosomal_L28, Ribosomal L28 family. The ri...  74.3    1e-18


>CDD:459953 pfam00830, Ribosomal_L28, Ribosomal L28 family.  The ribosomal 
28 family includes L28 proteins from bacteria and chloroplasts. 
The L24 protein from yeast also contains a region of similarity 
to prokaryotic L28 proteins. L24 from yeast is also 
found in the large ribosomal subunit.
Length=58

 Score = 74.3 bits (184),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 40/57 (70%), Gaps = 2/57 (4%)

Query  65   GLYGGAMIQFGNKISKGRNEGKTRRFWKPNVRRKKLWSEALGEYLFIKVTRKALRTI  121
                G   QFGN +S  +N  KT+R WKPN+++K+LWSE LG ++ ++V+ +ALRTI
Sbjct  3    CGLTGKGPQFGNNVSHSKN--KTKRRWKPNLQKKRLWSEELGRFVRLRVSTRALRTI  57



Lambda      K        H        a         alpha
   0.315    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00035280

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459953 pfam00830, Ribosomal_L28, Ribosomal L28 family. The ri...  74.3    1e-18


>CDD:459953 pfam00830, Ribosomal_L28, Ribosomal L28 family.  The ribosomal 
28 family includes L28 proteins from bacteria and chloroplasts. 
The L24 protein from yeast also contains a region of similarity 
to prokaryotic L28 proteins. L24 from yeast is also 
found in the large ribosomal subunit.
Length=58

 Score = 74.3 bits (184),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 40/57 (70%), Gaps = 2/57 (4%)

Query  65   GLYGGAMIQFGNKISKGRNEGKTRRFWKPNVRRKKLWSEALGEYLFIKVTRKALRTI  121
                G   QFGN +S  +N  KT+R WKPN+++K+LWSE LG ++ ++V+ +ALRTI
Sbjct  3    CGLTGKGPQFGNNVSHSKN--KTKRRWKPNLQKKRLWSEELGRFVRLRVSTRALRTI  57



Lambda      K        H        a         alpha
   0.315    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00030925

Length=986
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           125     2e-30


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 125 bits (316),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 120/562 (21%), Positives = 177/562 (31%), Gaps = 194/562 (35%)

Query  130  YRRADGSGNNVLWPHIGAAGTPYARSVQPK---TVQSP-------NLPDPETLFDCLLAR  179
            YR  DGS NN+  P  GAAGTP+AR + P     V +P        LP P  + + L A 
Sbjct  1    YRTIDGSCNNLKNPSWGAAGTPFARLLPPAYEDGVSAPRGSSSGSPLPSPRLVSNKLFAG  60

Query  180  KEYKEHPNKISSVLF-YIASIIIHDLFETDR-----------------------------  209
                  PN   ++L       I HDL  T                               
Sbjct  61   DSGIPDPNL--TLLLMQWGQFIDHDLTLTPESTSPNGSSCDCCCPPENLHPPCFPIPIPP  118

Query  210  KDPAISLT--------------------------SSYLDLSPLYGNNQQEQDLIRTFKDG  243
             DP  S                            +S+LD S +YG++++    +R+F  G
Sbjct  119  DDPFFSPFGVRCMPFVRSAPGCGLGNPREQINQVTSFLDGSQVYGSSEETARSLRSFSGG  178

Query  244  KLK------------------PDCFSTKRVLGF-PPDVGV-------VL-IMFNRFHNYV  276
             LK                    C S+  V  F   D           L  +F R HN +
Sbjct  179  LLKVNRSDDGKELLPFDPDGPCCCNSSGGVPCFLAGDSRANENPGLTALHTLFLREHNRI  238

Query  277  VEKLAMINEGGRFTKPQESDTAAYAKYDNDLFQTGRLVTCGLYVNIILKDYVRTILNINR  336
             ++LA +N       P  SD          LFQ  R +      +I   +++  IL  + 
Sbjct  239  ADELAKLN-------PHWSD--------ETLFQEARKIVIAQIQHITYNEWLPAILGEDN  283

Query  337  TDSIWSLDPRSEMKDGLLGRAAA--QATGN-QVAAEF-------------NLVYRWHSCI  380
             +             GLL           +  ++ EF               +YR     
Sbjct  284  MN-----------WFGLLPLPYNGYDPNVDPSISNEFATAAFRFGHSLIPPFLYRLDENN  332

Query  381  SQRDQKW-TEDMY---QELFPGQDPSKISLQDFLRGLGRWEAK-----LPGEPRERPFAG  431
               +      D +     L+ G       +   LRGL    A+        E     F G
Sbjct  333  VPEEPSLRLHDSFFNPDRLYEG------GIDPLLRGLATQPAQAVDNNFTEELTNHLF-G  385

Query  432  LQRKADGSYDDNDLVKIFEESVEDCAGAFGALHVPTVFRSIEALGIQQARSWNLATLNEF  491
               +  G     DL                            AL IQ+ R   L   N++
Sbjct  386  PPGEFSGL----DLA---------------------------ALNIQRGRDHGLPGYNDY  414

Query  492  RKYFNLAPYKTFEEINS--DPYVADQLKRLYDHPDRVEIYPGIIVEDAKESMAPGSGLCT  549
            R++  L P K+FE++       V  +L+ LY   D ++++ G + E       PG  +  
Sbjct  415  REFCGLPPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP----LPGGLVGP  470

Query  550  NFTISRAILSDA-VALVRGDRF  570
             F     I+ D    L  GDRF
Sbjct  471  TF---ACIIGDQFRRLRDGDRF  489



Lambda      K        H        a         alpha
   0.319    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1260129640


Query= TCONS_00030920

Length=1079
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           125     1e-30


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 125 bits (317),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 120/562 (21%), Positives = 177/562 (31%), Gaps = 194/562 (35%)

Query  130  YRRADGSGNNVLWPHIGAAGTPYARSVQPK---TVQSP-------NLPDPETLFDCLLAR  179
            YR  DGS NN+  P  GAAGTP+AR + P     V +P        LP P  + + L A 
Sbjct  1    YRTIDGSCNNLKNPSWGAAGTPFARLLPPAYEDGVSAPRGSSSGSPLPSPRLVSNKLFAG  60

Query  180  KEYKEHPNKISSVLF-YIASIIIHDLFETDR-----------------------------  209
                  PN   ++L       I HDL  T                               
Sbjct  61   DSGIPDPNL--TLLLMQWGQFIDHDLTLTPESTSPNGSSCDCCCPPENLHPPCFPIPIPP  118

Query  210  KDPAISLT--------------------------SSYLDLSPLYGNNQQEQDLIRTFKDG  243
             DP  S                            +S+LD S +YG++++    +R+F  G
Sbjct  119  DDPFFSPFGVRCMPFVRSAPGCGLGNPREQINQVTSFLDGSQVYGSSEETARSLRSFSGG  178

Query  244  KLK------------------PDCFSTKRVLGF-PPDVGV-------VL-IMFNRFHNYV  276
             LK                    C S+  V  F   D           L  +F R HN +
Sbjct  179  LLKVNRSDDGKELLPFDPDGPCCCNSSGGVPCFLAGDSRANENPGLTALHTLFLREHNRI  238

Query  277  VEKLAMINEGGRFTKPQESDTAAYAKYDNDLFQTGRLVTCGLYVNIILKDYVRTILNINR  336
             ++LA +N       P  SD          LFQ  R +      +I   +++  IL  + 
Sbjct  239  ADELAKLN-------PHWSD--------ETLFQEARKIVIAQIQHITYNEWLPAILGEDN  283

Query  337  TDSIWSLDPRSEMKDGLLGRAAA--QATGN-QVAAEF-------------NLVYRWHSCI  380
             +             GLL           +  ++ EF               +YR     
Sbjct  284  MN-----------WFGLLPLPYNGYDPNVDPSISNEFATAAFRFGHSLIPPFLYRLDENN  332

Query  381  SQRDQKW-TEDMY---QELFPGQDPSKISLQDFLRGLGRWEAK-----LPGEPRERPFAG  431
               +      D +     L+ G       +   LRGL    A+        E     F G
Sbjct  333  VPEEPSLRLHDSFFNPDRLYEG------GIDPLLRGLATQPAQAVDNNFTEELTNHLF-G  385

Query  432  LQRKADGSYDDNDLVKIFEESVEDCAGAFGALHVPTVFRSIEALGIQQARSWNLATLNEF  491
               +  G     DL                            AL IQ+ R   L   N++
Sbjct  386  PPGEFSGL----DLA---------------------------ALNIQRGRDHGLPGYNDY  414

Query  492  RKYFNLAPYKTFEEINS--DPYVADQLKRLYDHPDRVEIYPGIIVEDAKESMAPGSGLCT  549
            R++  L P K+FE++       V  +L+ LY   D ++++ G + E       PG  +  
Sbjct  415  REFCGLPPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP----LPGGLVGP  470

Query  550  NFTISRAILSDA-VALVRGDRF  570
             F     I+ D    L  GDRF
Sbjct  471  TF---ACIIGDQFRRLRDGDRF  489



Lambda      K        H        a         alpha
   0.319    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1391806108


Query= TCONS_00030921

Length=1079
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           125     1e-30


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 125 bits (317),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 120/562 (21%), Positives = 177/562 (31%), Gaps = 194/562 (35%)

Query  130  YRRADGSGNNVLWPHIGAAGTPYARSVQPK---TVQSP-------NLPDPETLFDCLLAR  179
            YR  DGS NN+  P  GAAGTP+AR + P     V +P        LP P  + + L A 
Sbjct  1    YRTIDGSCNNLKNPSWGAAGTPFARLLPPAYEDGVSAPRGSSSGSPLPSPRLVSNKLFAG  60

Query  180  KEYKEHPNKISSVLF-YIASIIIHDLFETDR-----------------------------  209
                  PN   ++L       I HDL  T                               
Sbjct  61   DSGIPDPNL--TLLLMQWGQFIDHDLTLTPESTSPNGSSCDCCCPPENLHPPCFPIPIPP  118

Query  210  KDPAISLT--------------------------SSYLDLSPLYGNNQQEQDLIRTFKDG  243
             DP  S                            +S+LD S +YG++++    +R+F  G
Sbjct  119  DDPFFSPFGVRCMPFVRSAPGCGLGNPREQINQVTSFLDGSQVYGSSEETARSLRSFSGG  178

Query  244  KLK------------------PDCFSTKRVLGF-PPDVGV-------VL-IMFNRFHNYV  276
             LK                    C S+  V  F   D           L  +F R HN +
Sbjct  179  LLKVNRSDDGKELLPFDPDGPCCCNSSGGVPCFLAGDSRANENPGLTALHTLFLREHNRI  238

Query  277  VEKLAMINEGGRFTKPQESDTAAYAKYDNDLFQTGRLVTCGLYVNIILKDYVRTILNINR  336
             ++LA +N       P  SD          LFQ  R +      +I   +++  IL  + 
Sbjct  239  ADELAKLN-------PHWSD--------ETLFQEARKIVIAQIQHITYNEWLPAILGEDN  283

Query  337  TDSIWSLDPRSEMKDGLLGRAAA--QATGN-QVAAEF-------------NLVYRWHSCI  380
             +             GLL           +  ++ EF               +YR     
Sbjct  284  MN-----------WFGLLPLPYNGYDPNVDPSISNEFATAAFRFGHSLIPPFLYRLDENN  332

Query  381  SQRDQKW-TEDMY---QELFPGQDPSKISLQDFLRGLGRWEAK-----LPGEPRERPFAG  431
               +      D +     L+ G       +   LRGL    A+        E     F G
Sbjct  333  VPEEPSLRLHDSFFNPDRLYEG------GIDPLLRGLATQPAQAVDNNFTEELTNHLF-G  385

Query  432  LQRKADGSYDDNDLVKIFEESVEDCAGAFGALHVPTVFRSIEALGIQQARSWNLATLNEF  491
               +  G     DL                            AL IQ+ R   L   N++
Sbjct  386  PPGEFSGL----DLA---------------------------ALNIQRGRDHGLPGYNDY  414

Query  492  RKYFNLAPYKTFEEINS--DPYVADQLKRLYDHPDRVEIYPGIIVEDAKESMAPGSGLCT  549
            R++  L P K+FE++       V  +L+ LY   D ++++ G + E       PG  +  
Sbjct  415  REFCGLPPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP----LPGGLVGP  470

Query  550  NFTISRAILSDA-VALVRGDRF  570
             F     I+ D    L  GDRF
Sbjct  471  TF---ACIIGDQFRRLRDGDRF  489



Lambda      K        H        a         alpha
   0.319    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1391806108


Query= TCONS_00035281

Length=928
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           124     2e-30


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 124 bits (315),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 120/562 (21%), Positives = 177/562 (31%), Gaps = 194/562 (35%)

Query  130  YRRADGSGNNVLWPHIGAAGTPYARSVQPK---TVQSP-------NLPDPETLFDCLLAR  179
            YR  DGS NN+  P  GAAGTP+AR + P     V +P        LP P  + + L A 
Sbjct  1    YRTIDGSCNNLKNPSWGAAGTPFARLLPPAYEDGVSAPRGSSSGSPLPSPRLVSNKLFAG  60

Query  180  KEYKEHPNKISSVLF-YIASIIIHDLFETDR-----------------------------  209
                  PN   ++L       I HDL  T                               
Sbjct  61   DSGIPDPNL--TLLLMQWGQFIDHDLTLTPESTSPNGSSCDCCCPPENLHPPCFPIPIPP  118

Query  210  KDPAISLT--------------------------SSYLDLSPLYGNNQQEQDLIRTFKDG  243
             DP  S                            +S+LD S +YG++++    +R+F  G
Sbjct  119  DDPFFSPFGVRCMPFVRSAPGCGLGNPREQINQVTSFLDGSQVYGSSEETARSLRSFSGG  178

Query  244  KLK------------------PDCFSTKRVLGF-PPDVGV-------VL-IMFNRFHNYV  276
             LK                    C S+  V  F   D           L  +F R HN +
Sbjct  179  LLKVNRSDDGKELLPFDPDGPCCCNSSGGVPCFLAGDSRANENPGLTALHTLFLREHNRI  238

Query  277  VEKLAMINEGGRFTKPQESDTAAYAKYDNDLFQTGRLVTCGLYVNIILKDYVRTILNINR  336
             ++LA +N       P  SD          LFQ  R +      +I   +++  IL  + 
Sbjct  239  ADELAKLN-------PHWSD--------ETLFQEARKIVIAQIQHITYNEWLPAILGEDN  283

Query  337  TDSIWSLDPRSEMKDGLLGRAAA--QATGN-QVAAEF-------------NLVYRWHSCI  380
             +             GLL           +  ++ EF               +YR     
Sbjct  284  MN-----------WFGLLPLPYNGYDPNVDPSISNEFATAAFRFGHSLIPPFLYRLDENN  332

Query  381  SQRDQKW-TEDMY---QELFPGQDPSKISLQDFLRGLGRWEAK-----LPGEPRERPFAG  431
               +      D +     L+ G       +   LRGL    A+        E     F G
Sbjct  333  VPEEPSLRLHDSFFNPDRLYEG------GIDPLLRGLATQPAQAVDNNFTEELTNHLF-G  385

Query  432  LQRKADGSYDDNDLVKIFEESVEDCAGAFGALHVPTVFRSIEALGIQQARSWNLATLNEF  491
               +  G     DL                            AL IQ+ R   L   N++
Sbjct  386  PPGEFSGL----DLA---------------------------ALNIQRGRDHGLPGYNDY  414

Query  492  RKYFNLAPYKTFEEINS--DPYVADQLKRLYDHPDRVEIYPGIIVEDAKESMAPGSGLCT  549
            R++  L P K+FE++       V  +L+ LY   D ++++ G + E       PG  +  
Sbjct  415  REFCGLPPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP----LPGGLVGP  470

Query  550  NFTISRAILSDA-VALVRGDRF  570
             F     I+ D    L  GDRF
Sbjct  471  TF---ACIIGDQFRRLRDGDRF  489



Lambda      K        H        a         alpha
   0.319    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1195783162


Query= TCONS_00030922

Length=1079
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           125     1e-30


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 125 bits (317),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 120/562 (21%), Positives = 177/562 (31%), Gaps = 194/562 (35%)

Query  130  YRRADGSGNNVLWPHIGAAGTPYARSVQPK---TVQSP-------NLPDPETLFDCLLAR  179
            YR  DGS NN+  P  GAAGTP+AR + P     V +P        LP P  + + L A 
Sbjct  1    YRTIDGSCNNLKNPSWGAAGTPFARLLPPAYEDGVSAPRGSSSGSPLPSPRLVSNKLFAG  60

Query  180  KEYKEHPNKISSVLF-YIASIIIHDLFETDR-----------------------------  209
                  PN   ++L       I HDL  T                               
Sbjct  61   DSGIPDPNL--TLLLMQWGQFIDHDLTLTPESTSPNGSSCDCCCPPENLHPPCFPIPIPP  118

Query  210  KDPAISLT--------------------------SSYLDLSPLYGNNQQEQDLIRTFKDG  243
             DP  S                            +S+LD S +YG++++    +R+F  G
Sbjct  119  DDPFFSPFGVRCMPFVRSAPGCGLGNPREQINQVTSFLDGSQVYGSSEETARSLRSFSGG  178

Query  244  KLK------------------PDCFSTKRVLGF-PPDVGV-------VL-IMFNRFHNYV  276
             LK                    C S+  V  F   D           L  +F R HN +
Sbjct  179  LLKVNRSDDGKELLPFDPDGPCCCNSSGGVPCFLAGDSRANENPGLTALHTLFLREHNRI  238

Query  277  VEKLAMINEGGRFTKPQESDTAAYAKYDNDLFQTGRLVTCGLYVNIILKDYVRTILNINR  336
             ++LA +N       P  SD          LFQ  R +      +I   +++  IL  + 
Sbjct  239  ADELAKLN-------PHWSD--------ETLFQEARKIVIAQIQHITYNEWLPAILGEDN  283

Query  337  TDSIWSLDPRSEMKDGLLGRAAA--QATGN-QVAAEF-------------NLVYRWHSCI  380
             +             GLL           +  ++ EF               +YR     
Sbjct  284  MN-----------WFGLLPLPYNGYDPNVDPSISNEFATAAFRFGHSLIPPFLYRLDENN  332

Query  381  SQRDQKW-TEDMY---QELFPGQDPSKISLQDFLRGLGRWEAK-----LPGEPRERPFAG  431
               +      D +     L+ G       +   LRGL    A+        E     F G
Sbjct  333  VPEEPSLRLHDSFFNPDRLYEG------GIDPLLRGLATQPAQAVDNNFTEELTNHLF-G  385

Query  432  LQRKADGSYDDNDLVKIFEESVEDCAGAFGALHVPTVFRSIEALGIQQARSWNLATLNEF  491
               +  G     DL                            AL IQ+ R   L   N++
Sbjct  386  PPGEFSGL----DLA---------------------------ALNIQRGRDHGLPGYNDY  414

Query  492  RKYFNLAPYKTFEEINS--DPYVADQLKRLYDHPDRVEIYPGIIVEDAKESMAPGSGLCT  549
            R++  L P K+FE++       V  +L+ LY   D ++++ G + E       PG  +  
Sbjct  415  REFCGLPPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP----LPGGLVGP  470

Query  550  NFTISRAILSDA-VALVRGDRF  570
             F     I+ D    L  GDRF
Sbjct  471  TF---ACIIGDQFRRLRDGDRF  489



Lambda      K        H        a         alpha
   0.319    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1391806108


Query= TCONS_00030923

Length=1079
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           125     1e-30


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 125 bits (317),  Expect = 1e-30, Method: Composition-based stats.
 Identities = 120/562 (21%), Positives = 177/562 (31%), Gaps = 194/562 (35%)

Query  130  YRRADGSGNNVLWPHIGAAGTPYARSVQPK---TVQSP-------NLPDPETLFDCLLAR  179
            YR  DGS NN+  P  GAAGTP+AR + P     V +P        LP P  + + L A 
Sbjct  1    YRTIDGSCNNLKNPSWGAAGTPFARLLPPAYEDGVSAPRGSSSGSPLPSPRLVSNKLFAG  60

Query  180  KEYKEHPNKISSVLF-YIASIIIHDLFETDR-----------------------------  209
                  PN   ++L       I HDL  T                               
Sbjct  61   DSGIPDPNL--TLLLMQWGQFIDHDLTLTPESTSPNGSSCDCCCPPENLHPPCFPIPIPP  118

Query  210  KDPAISLT--------------------------SSYLDLSPLYGNNQQEQDLIRTFKDG  243
             DP  S                            +S+LD S +YG++++    +R+F  G
Sbjct  119  DDPFFSPFGVRCMPFVRSAPGCGLGNPREQINQVTSFLDGSQVYGSSEETARSLRSFSGG  178

Query  244  KLK------------------PDCFSTKRVLGF-PPDVGV-------VL-IMFNRFHNYV  276
             LK                    C S+  V  F   D           L  +F R HN +
Sbjct  179  LLKVNRSDDGKELLPFDPDGPCCCNSSGGVPCFLAGDSRANENPGLTALHTLFLREHNRI  238

Query  277  VEKLAMINEGGRFTKPQESDTAAYAKYDNDLFQTGRLVTCGLYVNIILKDYVRTILNINR  336
             ++LA +N       P  SD          LFQ  R +      +I   +++  IL  + 
Sbjct  239  ADELAKLN-------PHWSD--------ETLFQEARKIVIAQIQHITYNEWLPAILGEDN  283

Query  337  TDSIWSLDPRSEMKDGLLGRAAA--QATGN-QVAAEF-------------NLVYRWHSCI  380
             +             GLL           +  ++ EF               +YR     
Sbjct  284  MN-----------WFGLLPLPYNGYDPNVDPSISNEFATAAFRFGHSLIPPFLYRLDENN  332

Query  381  SQRDQKW-TEDMY---QELFPGQDPSKISLQDFLRGLGRWEAK-----LPGEPRERPFAG  431
               +      D +     L+ G       +   LRGL    A+        E     F G
Sbjct  333  VPEEPSLRLHDSFFNPDRLYEG------GIDPLLRGLATQPAQAVDNNFTEELTNHLF-G  385

Query  432  LQRKADGSYDDNDLVKIFEESVEDCAGAFGALHVPTVFRSIEALGIQQARSWNLATLNEF  491
               +  G     DL                            AL IQ+ R   L   N++
Sbjct  386  PPGEFSGL----DLA---------------------------ALNIQRGRDHGLPGYNDY  414

Query  492  RKYFNLAPYKTFEEINS--DPYVADQLKRLYDHPDRVEIYPGIIVEDAKESMAPGSGLCT  549
            R++  L P K+FE++       V  +L+ LY   D ++++ G + E       PG  +  
Sbjct  415  REFCGLPPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP----LPGGLVGP  470

Query  550  NFTISRAILSDA-VALVRGDRF  570
             F     I+ D    L  GDRF
Sbjct  471  TF---ACIIGDQFRRLRDGDRF  489



Lambda      K        H        a         alpha
   0.319    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1391806108


Query= TCONS_00035283

Length=812
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           74.9    2e-14


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 74.9 bits (185),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 68/331 (21%), Positives = 107/331 (32%), Gaps = 99/331 (30%)

Query  1    MFNRFHNYVVEKLAMINEGGRFTKPQESDTAAYAKYDNDLFQTGRLVTCGLYVNIILKDY  60
            +F R HN + ++LA +N       P  SD          LFQ  R +      +I   ++
Sbjct  230  LFLREHNRIADELAKLN-------PHWSD--------ETLFQEARKIVIAQIQHITYNEW  274

Query  61   VRTILNINRTDSIWSLDPRSEMKDGLLGRAAA--QATGN-QVAAEF-------------N  104
            +  IL  +  +             GLL           +  ++ EF              
Sbjct  275  LPAILGEDNMN-----------WFGLLPLPYNGYDPNVDPSISNEFATAAFRFGHSLIPP  323

Query  105  LVYRWHSCISQRDQKW-TEDMY---QELFPGQDPSKISLQDFLRGLGRWEAK-----LPG  155
             +YR        +      D +     L+ G       +   LRGL    A+        
Sbjct  324  FLYRLDENNVPEEPSLRLHDSFFNPDRLYEG------GIDPLLRGLATQPAQAVDNNFTE  377

Query  156  EPRERPFAGLQRKADGSYDDNDLVKIFEESVEDCAGAFGALHVPTVFRSIEALGIQQARS  215
            E     F G   +  G     DL                            AL IQ+ R 
Sbjct  378  ELTNHLF-GPPGEFSGL----DLA---------------------------ALNIQRGRD  405

Query  216  WNLATLNEFRKYFNLAPYKTFEEINS--DPYVADQLKRLYDHPDRVEIYPGIIVEDAKES  273
              L   N++R++  L P K+FE++       V  +L+ LY   D ++++ G + E     
Sbjct  406  HGLPGYNDYREFCGLPPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP---  462

Query  274  MAPGSGLCTNFTISRAILSDA-VALVRGDRF  303
              PG  +   F     I+ D    L  GDRF
Sbjct  463  -LPGGLVGPTF---ACIIGDQFRRLRDGDRF  489



Lambda      K        H        a         alpha
   0.320    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1044799136


Query= TCONS_00035282

Length=812
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           74.9    2e-14


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 74.9 bits (185),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 68/331 (21%), Positives = 107/331 (32%), Gaps = 99/331 (30%)

Query  1    MFNRFHNYVVEKLAMINEGGRFTKPQESDTAAYAKYDNDLFQTGRLVTCGLYVNIILKDY  60
            +F R HN + ++LA +N       P  SD          LFQ  R +      +I   ++
Sbjct  230  LFLREHNRIADELAKLN-------PHWSD--------ETLFQEARKIVIAQIQHITYNEW  274

Query  61   VRTILNINRTDSIWSLDPRSEMKDGLLGRAAA--QATGN-QVAAEF-------------N  104
            +  IL  +  +             GLL           +  ++ EF              
Sbjct  275  LPAILGEDNMN-----------WFGLLPLPYNGYDPNVDPSISNEFATAAFRFGHSLIPP  323

Query  105  LVYRWHSCISQRDQKW-TEDMY---QELFPGQDPSKISLQDFLRGLGRWEAK-----LPG  155
             +YR        +      D +     L+ G       +   LRGL    A+        
Sbjct  324  FLYRLDENNVPEEPSLRLHDSFFNPDRLYEG------GIDPLLRGLATQPAQAVDNNFTE  377

Query  156  EPRERPFAGLQRKADGSYDDNDLVKIFEESVEDCAGAFGALHVPTVFRSIEALGIQQARS  215
            E     F G   +  G     DL                            AL IQ+ R 
Sbjct  378  ELTNHLF-GPPGEFSGL----DLA---------------------------ALNIQRGRD  405

Query  216  WNLATLNEFRKYFNLAPYKTFEEINS--DPYVADQLKRLYDHPDRVEIYPGIIVEDAKES  273
              L   N++R++  L P K+FE++       V  +L+ LY   D ++++ G + E     
Sbjct  406  HGLPGYNDYREFCGLPPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP---  462

Query  274  MAPGSGLCTNFTISRAILSDA-VALVRGDRF  303
              PG  +   F     I+ D    L  GDRF
Sbjct  463  -LPGGLVGPTF---ACIIGDQFRRLRDGDRF  489



Lambda      K        H        a         alpha
   0.320    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1044799136


Query= TCONS_00035284

Length=719
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           74.5    2e-14


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 74.5 bits (184),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 68/331 (21%), Positives = 107/331 (32%), Gaps = 99/331 (30%)

Query  1    MFNRFHNYVVEKLAMINEGGRFTKPQESDTAAYAKYDNDLFQTGRLVTCGLYVNIILKDY  60
            +F R HN + ++LA +N       P  SD          LFQ  R +      +I   ++
Sbjct  230  LFLREHNRIADELAKLN-------PHWSD--------ETLFQEARKIVIAQIQHITYNEW  274

Query  61   VRTILNINRTDSIWSLDPRSEMKDGLLGRAAA--QATGN-QVAAEF-------------N  104
            +  IL  +  +             GLL           +  ++ EF              
Sbjct  275  LPAILGEDNMN-----------WFGLLPLPYNGYDPNVDPSISNEFATAAFRFGHSLIPP  323

Query  105  LVYRWHSCISQRDQKW-TEDMY---QELFPGQDPSKISLQDFLRGLGRWEAK-----LPG  155
             +YR        +      D +     L+ G       +   LRGL    A+        
Sbjct  324  FLYRLDENNVPEEPSLRLHDSFFNPDRLYEG------GIDPLLRGLATQPAQAVDNNFTE  377

Query  156  EPRERPFAGLQRKADGSYDDNDLVKIFEESVEDCAGAFGALHVPTVFRSIEALGIQQARS  215
            E     F G   +  G     DL                            AL IQ+ R 
Sbjct  378  ELTNHLF-GPPGEFSGL----DLA---------------------------ALNIQRGRD  405

Query  216  WNLATLNEFRKYFNLAPYKTFEEINS--DPYVADQLKRLYDHPDRVEIYPGIIVEDAKES  273
              L   N++R++  L P K+FE++       V  +L+ LY   D ++++ G + E     
Sbjct  406  HGLPGYNDYREFCGLPPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP---  462

Query  274  MAPGSGLCTNFTISRAILSDA-VALVRGDRF  303
              PG  +   F     I+ D    L  GDRF
Sbjct  463  -LPGGLVGPTF---ACIIGDQFRRLRDGDRF  489



Lambda      K        H        a         alpha
   0.320    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 909470000


Query= TCONS_00030924

Length=986
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase           125     2e-30


>CDD:460804 pfam03098, An_peroxidase, Animal haem peroxidase.  
Length=531

 Score = 125 bits (316),  Expect = 2e-30, Method: Composition-based stats.
 Identities = 120/562 (21%), Positives = 177/562 (31%), Gaps = 194/562 (35%)

Query  130  YRRADGSGNNVLWPHIGAAGTPYARSVQPK---TVQSP-------NLPDPETLFDCLLAR  179
            YR  DGS NN+  P  GAAGTP+AR + P     V +P        LP P  + + L A 
Sbjct  1    YRTIDGSCNNLKNPSWGAAGTPFARLLPPAYEDGVSAPRGSSSGSPLPSPRLVSNKLFAG  60

Query  180  KEYKEHPNKISSVLF-YIASIIIHDLFETDR-----------------------------  209
                  PN   ++L       I HDL  T                               
Sbjct  61   DSGIPDPNL--TLLLMQWGQFIDHDLTLTPESTSPNGSSCDCCCPPENLHPPCFPIPIPP  118

Query  210  KDPAISLT--------------------------SSYLDLSPLYGNNQQEQDLIRTFKDG  243
             DP  S                            +S+LD S +YG++++    +R+F  G
Sbjct  119  DDPFFSPFGVRCMPFVRSAPGCGLGNPREQINQVTSFLDGSQVYGSSEETARSLRSFSGG  178

Query  244  KLK------------------PDCFSTKRVLGF-PPDVGV-------VL-IMFNRFHNYV  276
             LK                    C S+  V  F   D           L  +F R HN +
Sbjct  179  LLKVNRSDDGKELLPFDPDGPCCCNSSGGVPCFLAGDSRANENPGLTALHTLFLREHNRI  238

Query  277  VEKLAMINEGGRFTKPQESDTAAYAKYDNDLFQTGRLVTCGLYVNIILKDYVRTILNINR  336
             ++LA +N       P  SD          LFQ  R +      +I   +++  IL  + 
Sbjct  239  ADELAKLN-------PHWSD--------ETLFQEARKIVIAQIQHITYNEWLPAILGEDN  283

Query  337  TDSIWSLDPRSEMKDGLLGRAAA--QATGN-QVAAEF-------------NLVYRWHSCI  380
             +             GLL           +  ++ EF               +YR     
Sbjct  284  MN-----------WFGLLPLPYNGYDPNVDPSISNEFATAAFRFGHSLIPPFLYRLDENN  332

Query  381  SQRDQKW-TEDMY---QELFPGQDPSKISLQDFLRGLGRWEAK-----LPGEPRERPFAG  431
               +      D +     L+ G       +   LRGL    A+        E     F G
Sbjct  333  VPEEPSLRLHDSFFNPDRLYEG------GIDPLLRGLATQPAQAVDNNFTEELTNHLF-G  385

Query  432  LQRKADGSYDDNDLVKIFEESVEDCAGAFGALHVPTVFRSIEALGIQQARSWNLATLNEF  491
               +  G     DL                            AL IQ+ R   L   N++
Sbjct  386  PPGEFSGL----DLA---------------------------ALNIQRGRDHGLPGYNDY  414

Query  492  RKYFNLAPYKTFEEINS--DPYVADQLKRLYDHPDRVEIYPGIIVEDAKESMAPGSGLCT  549
            R++  L P K+FE++       V  +L+ LY   D ++++ G + E       PG  +  
Sbjct  415  REFCGLPPAKSFEDLTDVIPNEVIAKLRELYGSVDDIDLWVGGLAEKP----LPGGLVGP  470

Query  550  NFTISRAILSDA-VALVRGDRF  570
             F     I+ D    L  GDRF
Sbjct  471  TF---ACIIGDQFRRLRDGDRF  489



Lambda      K        H        a         alpha
   0.319    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1260129640


Query= TCONS_00030926

Length=222


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0774    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00030927

Length=4039
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461803 pfam06025, DUF913, Domain of Unknown Function (DUF913)...  534     1e-172
CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  397     5e-126
CDD:428721 pfam06012, DUF908, Domain of Unknown Function (DUF908)     378     2e-118


>CDD:461803 pfam06025, DUF913, Domain of Unknown Function (DUF913).  Members 
of this family are found in various ubiquitin protein ligases.
Length=369

 Score = 534 bits (1378),  Expect = 1e-172, Method: Composition-based stats.
 Identities = 191/450 (42%), Positives = 260/450 (58%), Gaps = 81/450 (18%)

Query  553   RVMEFLDTFVHAVRDALATLTNAKGFDAISDLIDYETKTSFENVSRGAGLPPQHKTPSID  612
             R ++FLDT ++  +DA     NA G DAI D I +E  ++ E    G G P ++K+  +D
Sbjct  1     RAVQFLDTLIYNFQDAFQAFRNAGGLDAIIDRIVHEVDSALELAEAGKGTPSEYKSSVVD  60

Query  613   YQIPYFQQQTLRWMFRFVNHIMQHNGGGFDRVLRNLIDSPQLLTSLRLVFENARVFGSHV  672
             Y+IPY++QQ L+W+ +F++H+MQH+GGG DR+LRNLIDS QLL SLR + ENA+VFGS V
Sbjct  61    YEIPYYRQQLLKWLLKFIHHMMQHSGGGTDRLLRNLIDSSQLLGSLRKIIENAKVFGSSV  120

Query  673   WSNAVNILSSFIHNEPTSYAVIAEAGLSKSFLEAVTSSELKAPEKPPVVETESAAPETQP  732
             WS AVNILS FIHNEPTS+AVI EAGLSK+FLEAV                         
Sbjct  121   WSLAVNILSDFIHNEPTSFAVIQEAGLSKAFLEAV-------------------------  155

Query  733   GDQPTPLPSDAVSSPSPHGEQKDREYNMARSKDARLAPGIMPAAEALSCIPSAFGAICLN  792
                                                LA GI+P++EA++ IP+AFGAICLN
Sbjct  156   -----------------------------------LAKGILPSSEAINSIPNAFGAICLN  180

Query  793   SSGLELFQSSNALESFFEIFENPQHVKCLKDDHNLVRSLGTTFDELVRHHPALKASIMTA  852
             ++GLELF+SSNALESFFEIFE+P HVK ++ D  L  +LG++FDELVRHHP+LK +I+ A
Sbjct  181   NAGLELFKSSNALESFFEIFESPDHVKAMETDGELASNLGSSFDELVRHHPSLKPAIINA  240

Query  853   IIVMVARVGLLCKSKAWAHGMGTKMWVEGPQGTPQISGNYDVLALEIGAAMDASLDDFRN  912
             +I M+ARV  L  +KA   G G K+WV     +          +    ++    ++    
Sbjct  241   VIDMLARVVELGSTKAEPDGWGAKLWVGCSSSS----------SFSPASSGSLPMETDGE  290

Query  913   LGVRELTSATLPNGGKLNLGDLTQLLPSSPEYAEPQDVDAAGLTVTDYVYPVVRFLGAFF  972
              G    +             D+        +  E  + ++ G ++TDY+  V RFL AFF
Sbjct  291   SGDESSSDE-----------DVEMEDAPDTDSTEETEPESHGNSLTDYIDNVARFLEAFF  339

Query  973   ENQANCSSFIESGAVEFVLDFATLQSLPFD  1002
              N ++CS FIE G +E +LD ATL SLP+D
Sbjct  340   SNNSHCSDFIEKGGIELLLDLATLPSLPYD  369


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 397 bits (1023),  Expect = 5e-126, Method: Composition-based stats.
 Identities = 143/313 (46%), Positives = 205/313 (65%), Gaps = 15/313 (5%)

Query  3733  QVLARGMFNPNYALFIPVAADRTTFHPNRLSGVNS--EHLMFFKFIGRIIGKALYEGRVL  3790
              +L++ +F+PNY LF     D  T+  N  S  +   E L +FKF+G+++GKA+Y G +L
Sbjct  1     TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  3791  DCHFSRAVYKCILGRSVSIKDMETLDLDYYKSLLWML--ENDITDIITETFAVETDDFGE  3848
             D  F    YK +LG  ++++D+E++D + YKSL  +L  +ND  + +  TF +    FGE
Sbjct  61    DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTI--PVFGE  118

Query  3849  KQVIDLIENGRNIPVTQENKEEYVQRVVDYRLVKSVKDQLDNFLKGFHDIIPPDLISIFN  3908
              + I+LI NGRNIPVT ENKEEY++  VDYRL KS++ QL+ F KGF+ +IP + +S+F 
Sbjct  119   SKTIELIPNGRNIPVTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYSVIPKEALSLFT  178

Query  3909  EQELELLISGLPEIDVDDWKANTEY-HNYSASSPQIQWFWRAVRSFDKEERAKLLQFVTG  3967
              +ELELLI G PEIDV+D K NTEY   Y+ +SP IQWFW  +  F  E+R   L+FVTG
Sbjct  179   PEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPEQRRLFLKFVTG  238

Query  3968  TSKVPLNGFKELEGMNGVSKFNIHR-DYGNKDRLPSSHTCFNQLDLPEYDSYETLRQRLY  4026
             +S++P+ GFK L       KF I R    + DRLP++HTCFN+L LP+Y S E L+++L 
Sbjct  239   SSRLPVGGFKSLP------KFTIVRKGGDDDDRLPTAHTCFNRLKLPDYSSKEILKEKLL  292

Query  4027  TAMTAGSDYFGFA  4039
              A+  G + FG +
Sbjct  293   IAIEEG-EGFGLS  304


>CDD:428721 pfam06012, DUF908, Domain of Unknown Function (DUF908).  
Length=351

 Score = 378 bits (972),  Expect = 2e-118, Method: Composition-based stats.
 Identities = 174/377 (46%), Positives = 235/377 (62%), Gaps = 33/377 (9%)

Query  119  GDRELVEAILDFSRLLLEKCGNRSLYNSSERLGELLNTTSLSLLQSTLRLALCLAQRYHS  178
            GDRELVEAIL F+RLLLE CGNRS+YNSSE L +LLNTTSL +L + LRL L LAQRY +
Sbjct  1    GDRELVEAILRFTRLLLENCGNRSIYNSSEHLNDLLNTTSLDVLLAALRLLLRLAQRYSA  60

Query  179  RQR----GGSHIQQSLLAAHYNIDLEKLQKIAAPFPRPYTSGKSPVPFTAGTKGKEKGAH  234
                      HIQQSLLA HYNIDL++L K+A PFP+P     +                
Sbjct  61   SNSRRGSAPRHIQQSLLANHYNIDLDRLLKLAQPFPKPPPPDSTDPA------PSTTKNS  114

Query  235  TRHNANDLISITRESD--TWDEWGHVRLIYYPSAPAEPAKLASENAQGGLLSQPPTTPTP  292
                ANDL+S+ +E       EWG V+  YYPS+ ++ A  +S+++     +  P+TPTP
Sbjct  115  ANEYANDLVSLAKEDSKVLPSEWGSVKFTYYPSSSSDEAPTSSKSSTSS--NSSPSTPTP  172

Query  293  LRRSHTHPTPQLGRTPVVEDSPGSITNSPSGKPEEALRGGKVLDIPYSRVSASKAEDLLA  352
            LRRS T  T          DSP S + S      ++  G +  +IP S+V++   ED+LA
Sbjct  173  LRRSSTLGTSP--------DSPSSPSTSTPSSAADSDEGLRTFEIPESKVASKSLEDILA  224

Query  353  GHLDELPDESKYELLHRIRTAQGVASSNFT-REQILAIRILAITNLAYVYPESLFQQRIL  411
              +++LP ES++ELLHRIR A+ + SS+   R+Q+LAIR+LAI NLAY++PES FQ ++ 
Sbjct  225  KAIEDLPKESRFELLHRIRIAKALNSSSEESRQQLLAIRLLAIANLAYIHPESTFQTKLF  284

Query  412  QYDNEQPKRLQLAYQLGELVHLGASGDLPVSRTLQTLALNALDALAKHKSRAIDVCAALS  471
            +YD +      L YQL EL+H     D  V   LQT AL AL+ALA+H+++  DV +AL 
Sbjct  285  EYDPD------LVYQLAELIHP----DTEVPLELQTAALYALEALARHRAKLSDVLSALG  334

Query  472  VNVNHGVLMFLTRKAVN  488
             NVNHG+L+++ RKAV 
Sbjct  335  ANVNHGILLYVLRKAVA  351



Lambda      K        H        a         alpha
   0.314    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 4874753156


Query= TCONS_00030928

Length=1394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  396     7e-128


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 396 bits (1019),  Expect = 7e-128, Method: Composition-based stats.
 Identities = 143/313 (46%), Positives = 205/313 (65%), Gaps = 15/313 (5%)

Query  1088  QVLARGMFNPNYALFIPVAADRTTFHPNRLSGVNS--EHLMFFKFIGRIIGKALYEGRVL  1145
              +L++ +F+PNY LF     D  T+  N  S  +   E L +FKF+G+++GKA+Y G +L
Sbjct  1     TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  1146  DCHFSRAVYKCILGRSVSIKDMETLDLDYYKSLLWML--ENDITDIITETFAVETDDFGE  1203
             D  F    YK +LG  ++++D+E++D + YKSL  +L  +ND  + +  TF +    FGE
Sbjct  61    DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTI--PVFGE  118

Query  1204  KQVIDLIENGRNIPVTQENKEEYVQRVVDYRLVKSVKDQLDNFLKGFHDIIPPDLISIFN  1263
              + I+LI NGRNIPVT ENKEEY++  VDYRL KS++ QL+ F KGF+ +IP + +S+F 
Sbjct  119   SKTIELIPNGRNIPVTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYSVIPKEALSLFT  178

Query  1264  EQELELLISGLPEIDVDDWKANTEY-HNYSASSPQIQWFWRAVRSFDKEERAKLLQFVTG  1322
              +ELELLI G PEIDV+D K NTEY   Y+ +SP IQWFW  +  F  E+R   L+FVTG
Sbjct  179   PEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPEQRRLFLKFVTG  238

Query  1323  TSKVPLNGFKELEGMNGVSKFNIHR-DYGNKDRLPSSHTCFNQLDLPEYDSYETLRQRLY  1381
             +S++P+ GFK L       KF I R    + DRLP++HTCFN+L LP+Y S E L+++L 
Sbjct  239   SSRLPVGGFKSLP------KFTIVRKGGDDDDRLPTAHTCFNRLKLPDYSSKEILKEKLL  292

Query  1382  TAMTAGSDYFGFA  1394
              A+  G + FG +
Sbjct  293   IAIEEG-EGFGLS  304



Lambda      K        H        a         alpha
   0.316    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1784073600


Query= TCONS_00030929

Length=2682
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  362     5e-114


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 362 bits (932),  Expect = 5e-114, Method: Composition-based stats.
 Identities = 132/283 (47%), Positives = 186/283 (66%), Gaps = 14/283 (5%)

Query  2400  QVLARGMFNPNYALFIPVAADRTTFHPNRLSGVNS--EHLMFFKFIGRIIGKALYEGRVL  2457
              +L++ +F+PNY LF     D  T+  N  S  +   E L +FKF+G+++GKA+Y G +L
Sbjct  1     TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  2458  DCHFSRAVYKCILGRSVSIKDMETLDLDYYKSLLWML--ENDITDIITETFAVETDDFGE  2515
             D  F    YK +LG  ++++D+E++D + YKSL  +L  +ND  + +  TF +    FGE
Sbjct  61    DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTI--PVFGE  118

Query  2516  KQVIDLIENGRNIPVTQENKEEYVQRVVDYRLVKSVKDQLDNFLKGFHDIIPPDLISIFN  2575
              + I+LI NGRNIPVT ENKEEY++  VDYRL KS++ QL+ F KGF+ +IP + +S+F 
Sbjct  119   SKTIELIPNGRNIPVTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYSVIPKEALSLFT  178

Query  2576  EQELELLISGLPEIDVDDWKANTEY-HNYSASSPQIQWFWRAVRSFDKEERAKLLQFVTG  2634
              +ELELLI G PEIDV+D K NTEY   Y+ +SP IQWFW  +  F  E+R   L+FVTG
Sbjct  179   PEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPEQRRLFLKFVTG  238

Query  2635  TSKVPLNGFKELEGMNGVSKFNIHR-DYGNKDRLPSSHTCFNR  2676
             +S++P+ GFK L       KF I R    + DRLP++HTCFNR
Sbjct  239   SSRLPVGGFKSLP------KFTIVRKGGDDDDRLPTAHTCFNR  275



Lambda      K        H        a         alpha
   0.313    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3297019390


Query= TCONS_00035285

Length=1370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  362     2e-115


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 362 bits (931),  Expect = 2e-115, Method: Composition-based stats.
 Identities = 132/283 (47%), Positives = 186/283 (66%), Gaps = 14/283 (5%)

Query  1088  QVLARGMFNPNYALFIPVAADRTTFHPNRLSGVNS--EHLMFFKFIGRIIGKALYEGRVL  1145
              +L++ +F+PNY LF     D  T+  N  S  +   E L +FKF+G+++GKA+Y G +L
Sbjct  1     TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  1146  DCHFSRAVYKCILGRSVSIKDMETLDLDYYKSLLWML--ENDITDIITETFAVETDDFGE  1203
             D  F    YK +LG  ++++D+E++D + YKSL  +L  +ND  + +  TF +    FGE
Sbjct  61    DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTI--PVFGE  118

Query  1204  KQVIDLIENGRNIPVTQENKEEYVQRVVDYRLVKSVKDQLDNFLKGFHDIIPPDLISIFN  1263
              + I+LI NGRNIPVT ENKEEY++  VDYRL KS++ QL+ F KGF+ +IP + +S+F 
Sbjct  119   SKTIELIPNGRNIPVTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYSVIPKEALSLFT  178

Query  1264  EQELELLISGLPEIDVDDWKANTEY-HNYSASSPQIQWFWRAVRSFDKEERAKLLQFVTG  1322
              +ELELLI G PEIDV+D K NTEY   Y+ +SP IQWFW  +  F  E+R   L+FVTG
Sbjct  179   PEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPEQRRLFLKFVTG  238

Query  1323  TSKVPLNGFKELEGMNGVSKFNIHR-DYGNKDRLPSSHTCFNR  1364
             +S++P+ GFK L       KF I R    + DRLP++HTCFNR
Sbjct  239   SSRLPVGGFKSLP------KFTIVRKGGDDDDRLPTAHTCFNR  275



Lambda      K        H        a         alpha
   0.315    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1751035200


Query= TCONS_00030930

Length=2706
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  396     7e-126


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 396 bits (1021),  Expect = 7e-126, Method: Composition-based stats.
 Identities = 143/313 (46%), Positives = 205/313 (65%), Gaps = 15/313 (5%)

Query  2400  QVLARGMFNPNYALFIPVAADRTTFHPNRLSGVNS--EHLMFFKFIGRIIGKALYEGRVL  2457
              +L++ +F+PNY LF     D  T+  N  S  +   E L +FKF+G+++GKA+Y G +L
Sbjct  1     TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  2458  DCHFSRAVYKCILGRSVSIKDMETLDLDYYKSLLWML--ENDITDIITETFAVETDDFGE  2515
             D  F    YK +LG  ++++D+E++D + YKSL  +L  +ND  + +  TF +    FGE
Sbjct  61    DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTI--PVFGE  118

Query  2516  KQVIDLIENGRNIPVTQENKEEYVQRVVDYRLVKSVKDQLDNFLKGFHDIIPPDLISIFN  2575
              + I+LI NGRNIPVT ENKEEY++  VDYRL KS++ QL+ F KGF+ +IP + +S+F 
Sbjct  119   SKTIELIPNGRNIPVTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYSVIPKEALSLFT  178

Query  2576  EQELELLISGLPEIDVDDWKANTEY-HNYSASSPQIQWFWRAVRSFDKEERAKLLQFVTG  2634
              +ELELLI G PEIDV+D K NTEY   Y+ +SP IQWFW  +  F  E+R   L+FVTG
Sbjct  179   PEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPEQRRLFLKFVTG  238

Query  2635  TSKVPLNGFKELEGMNGVSKFNIHR-DYGNKDRLPSSHTCFNQLDLPEYDSYETLRQRLY  2693
             +S++P+ GFK L       KF I R    + DRLP++HTCFN+L LP+Y S E L+++L 
Sbjct  239   SSRLPVGGFKSLP------KFTIVRKGGDDDDRLPTAHTCFNRLKLPDYSSKEILKEKLL  292

Query  2694  TAMTAGSDYFGFA  2706
              A+  G + FG +
Sbjct  293   IAIEEG-EGFGLS  304



Lambda      K        H        a         alpha
   0.313    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3327701230


Query= TCONS_00030931

Length=4037
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461803 pfam06025, DUF913, Domain of Unknown Function (DUF913)...  534     1e-172
CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  397     6e-126
CDD:428721 pfam06012, DUF908, Domain of Unknown Function (DUF908)     378     2e-118


>CDD:461803 pfam06025, DUF913, Domain of Unknown Function (DUF913).  Members 
of this family are found in various ubiquitin protein ligases.
Length=369

 Score = 534 bits (1378),  Expect = 1e-172, Method: Composition-based stats.
 Identities = 191/450 (42%), Positives = 260/450 (58%), Gaps = 81/450 (18%)

Query  553   RVMEFLDTFVHAVRDALATLTNAKGFDAISDLIDYETKTSFENVSRGAGLPPQHKTPSID  612
             R ++FLDT ++  +DA     NA G DAI D I +E  ++ E    G G P ++K+  +D
Sbjct  1     RAVQFLDTLIYNFQDAFQAFRNAGGLDAIIDRIVHEVDSALELAEAGKGTPSEYKSSVVD  60

Query  613   YQIPYFQQQTLRWMFRFVNHIMQHNGGGFDRVLRNLIDSPQLLTSLRLVFENARVFGSHV  672
             Y+IPY++QQ L+W+ +F++H+MQH+GGG DR+LRNLIDS QLL SLR + ENA+VFGS V
Sbjct  61    YEIPYYRQQLLKWLLKFIHHMMQHSGGGTDRLLRNLIDSSQLLGSLRKIIENAKVFGSSV  120

Query  673   WSNAVNILSSFIHNEPTSYAVIAEAGLSKSFLEAVTSSELKAPEKPPVVETESAAPETQP  732
             WS AVNILS FIHNEPTS+AVI EAGLSK+FLEAV                         
Sbjct  121   WSLAVNILSDFIHNEPTSFAVIQEAGLSKAFLEAV-------------------------  155

Query  733   GDQPTPLPSDAVSSPSPHGEQKDREYNMARSKDARLAPGIMPAAEALSCIPSAFGAICLN  792
                                                LA GI+P++EA++ IP+AFGAICLN
Sbjct  156   -----------------------------------LAKGILPSSEAINSIPNAFGAICLN  180

Query  793   SSGLELFQSSNALESFFEIFENPQHVKCLKDDHNLVRSLGTTFDELVRHHPALKASIMTA  852
             ++GLELF+SSNALESFFEIFE+P HVK ++ D  L  +LG++FDELVRHHP+LK +I+ A
Sbjct  181   NAGLELFKSSNALESFFEIFESPDHVKAMETDGELASNLGSSFDELVRHHPSLKPAIINA  240

Query  853   IIVMVARVGLLCKSKAWAHGMGTKMWVEGPQGTPQISGNYDVLALEIGAAMDASLDDFRN  912
             +I M+ARV  L  +KA   G G K+WV     +          +    ++    ++    
Sbjct  241   VIDMLARVVELGSTKAEPDGWGAKLWVGCSSSS----------SFSPASSGSLPMETDGE  290

Query  913   LGVRELTSATLPNGGKLNLGDLTQLLPSSPEYAEPQDVDAAGLTVTDYVYPVVRFLGAFF  972
              G    +             D+        +  E  + ++ G ++TDY+  V RFL AFF
Sbjct  291   SGDESSSDE-----------DVEMEDAPDTDSTEETEPESHGNSLTDYIDNVARFLEAFF  339

Query  973   ENQANCSSFIESGAVEFVLDFATLQSLPFD  1002
              N ++CS FIE G +E +LD ATL SLP+D
Sbjct  340   SNNSHCSDFIEKGGIELLLDLATLPSLPYD  369


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 397 bits (1023),  Expect = 6e-126, Method: Composition-based stats.
 Identities = 143/313 (46%), Positives = 205/313 (65%), Gaps = 15/313 (5%)

Query  3731  QVLARGMFNPNYALFIPVAADRTTFHPNRLSGVNS--EHLMFFKFIGRIIGKALYEGRVL  3788
              +L++ +F+PNY LF     D  T+  N  S  +   E L +FKF+G+++GKA+Y G +L
Sbjct  1     TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  3789  DCHFSRAVYKCILGRSVSIKDMETLDLDYYKSLLWML--ENDITDIITETFAVETDDFGE  3846
             D  F    YK +LG  ++++D+E++D + YKSL  +L  +ND  + +  TF +    FGE
Sbjct  61    DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTI--PVFGE  118

Query  3847  KQVIDLIENGRNIPVTQENKEEYVQRVVDYRLVKSVKDQLDNFLKGFHDIIPPDLISIFN  3906
              + I+LI NGRNIPVT ENKEEY++  VDYRL KS++ QL+ F KGF+ +IP + +S+F 
Sbjct  119   SKTIELIPNGRNIPVTNENKEEYIRLYVDYRLNKSIEPQLEAFRKGFYSVIPKEALSLFT  178

Query  3907  EQELELLISGLPEIDVDDWKANTEY-HNYSASSPQIQWFWRAVRSFDKEERAKLLQFVTG  3965
              +ELELLI G PEIDV+D K NTEY   Y+ +SP IQWFW  +  F  E+R   L+FVTG
Sbjct  179   PEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWEILEEFSPEQRRLFLKFVTG  238

Query  3966  TSKVPLNGFKELEGMNGVSKFNIHR-DYGNKDRLPSSHTCFNQLDLPEYDSYETLRQRLY  4024
             +S++P+ GFK L       KF I R    + DRLP++HTCFN+L LP+Y S E L+++L 
Sbjct  239   SSRLPVGGFKSLP------KFTIVRKGGDDDDRLPTAHTCFNRLKLPDYSSKEILKEKLL  292

Query  4025  TAMTAGSDYFGFA  4037
              A+  G + FG +
Sbjct  293   IAIEEG-EGFGLS  304


>CDD:428721 pfam06012, DUF908, Domain of Unknown Function (DUF908).  
Length=351

 Score = 378 bits (972),  Expect = 2e-118, Method: Composition-based stats.
 Identities = 174/377 (46%), Positives = 235/377 (62%), Gaps = 33/377 (9%)

Query  119  GDRELVEAILDFSRLLLEKCGNRSLYNSSERLGELLNTTSLSLLQSTLRLALCLAQRYHS  178
            GDRELVEAIL F+RLLLE CGNRS+YNSSE L +LLNTTSL +L + LRL L LAQRY +
Sbjct  1    GDRELVEAILRFTRLLLENCGNRSIYNSSEHLNDLLNTTSLDVLLAALRLLLRLAQRYSA  60

Query  179  RQR----GGSHIQQSLLAAHYNIDLEKLQKIAAPFPRPYTSGKSPVPFTAGTKGKEKGAH  234
                      HIQQSLLA HYNIDL++L K+A PFP+P     +                
Sbjct  61   SNSRRGSAPRHIQQSLLANHYNIDLDRLLKLAQPFPKPPPPDSTDPA------PSTTKNS  114

Query  235  TRHNANDLISITRESD--TWDEWGHVRLIYYPSAPAEPAKLASENAQGGLLSQPPTTPTP  292
                ANDL+S+ +E       EWG V+  YYPS+ ++ A  +S+++     +  P+TPTP
Sbjct  115  ANEYANDLVSLAKEDSKVLPSEWGSVKFTYYPSSSSDEAPTSSKSSTSS--NSSPSTPTP  172

Query  293  LRRSHTHPTPQLGRTPVVEDSPGSITNSPSGKPEEALRGGKVLDIPYSRVSASKAEDLLA  352
            LRRS T  T          DSP S + S      ++  G +  +IP S+V++   ED+LA
Sbjct  173  LRRSSTLGTSP--------DSPSSPSTSTPSSAADSDEGLRTFEIPESKVASKSLEDILA  224

Query  353  GHLDELPDESKYELLHRIRTAQGVASSNFT-REQILAIRILAITNLAYVYPESLFQQRIL  411
              +++LP ES++ELLHRIR A+ + SS+   R+Q+LAIR+LAI NLAY++PES FQ ++ 
Sbjct  225  KAIEDLPKESRFELLHRIRIAKALNSSSEESRQQLLAIRLLAIANLAYIHPESTFQTKLF  284

Query  412  QYDNEQPKRLQLAYQLGELVHLGASGDLPVSRTLQTLALNALDALAKHKSRAIDVCAALS  471
            +YD +      L YQL EL+H     D  V   LQT AL AL+ALA+H+++  DV +AL 
Sbjct  285  EYDPD------LVYQLAELIHP----DTEVPLELQTAALYALEALARHRAKLSDVLSALG  334

Query  472  VNVNHGVLMFLTRKAVN  488
             NVNHG+L+++ RKAV 
Sbjct  335  ANVNHGILLYVLRKAVA  351



Lambda      K        H        a         alpha
   0.314    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0702    0.140     1.90     42.6     43.6 

Effective search space used: 4872274888


Query= TCONS_00030932

Length=1279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  192     3e-55


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 192 bits (491),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 73/166 (44%), Positives = 108/166 (65%), Gaps = 6/166 (4%)

Query  1088  QVLARGMFNPNYALFIPVAADRTTFHPNRLSGVNS--EHLMFFKFIGRIIGKALYEGRVL  1145
              +L++ +F+PNY LF     D  T+  N  S  +   E L +FKF+G+++GKA+Y G +L
Sbjct  1     TLLSKELFDPNYGLFEYETEDDRTYWFNPSSSESPDLELLDYFKFLGKLLGKAIYNGILL  60

Query  1146  DCHFSRAVYKCILGRSVSIKDMETLDLDYYKSLLWML--ENDITDIITETFAVETDDFGE  1203
             D  F    YK +LG  ++++D+E++D + YKSL  +L  +ND  + +  TF +    FGE
Sbjct  61    DLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDNDDDEDLGLTFTI--PVFGE  118

Query  1204  KQVIDLIENGRNIPVTQENKEEYVQRVVDYRLVKSVKDQLDNFLKG  1249
              + I+LI NGRNIPVT ENKEEY++  VDYRL KS++ QL+ F KG
Sbjct  119   SKTIELIPNGRNIPVTNENKEEYIRLYVDYRLNKSIEPQLEAFRKG  164



Lambda      K        H        a         alpha
   0.315    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1625764600


Query= TCONS_00030933

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  334     1e-116


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 334 bits (859),  Expect = 1e-116, Method: Composition-based stats.
 Identities = 127/272 (47%), Positives = 181/272 (67%), Gaps = 18/272 (7%)

Query  2    FFKFIGRIIGKALYEGRVLDCHFSRAVYKCILGRSVSIKDMETLDLDYYKSLLWML--EN  59
            +FKF+G+++GKA+Y G +LD  F    YK +LG  ++++D+E++D + YKSL  +L  +N
Sbjct  42   YFKFLGKLLGKAIYNGILLDLPFPPFFYKKLLGEPLTLEDLESIDPELYKSLKSLLNMDN  101

Query  60   DITDIITETFAVETDDFGEKQVIDLIENGRNIPVTQENKEEYVQRVVDYRLVKSVKDQLD  119
            D  + +  TF +    FGE + I+LI NGRNIPVT ENKEEY++  VDYRL KS++ QL+
Sbjct  102  DDDEDLGLTFTI--PVFGESKTIELIPNGRNIPVTNENKEEYIRLYVDYRLNKSIEPQLE  159

Query  120  NFLKGFHDIIPPDLISIFNEQELELLISGLPEIDVDDWKANTEY-HNYSASSPQIQWFWR  178
             F KGF+ +IP + +S+F  +ELELLI G PEIDV+D K NTEY   Y+ +SP IQWFW 
Sbjct  160  AFRKGFYSVIPKEALSLFTPEELELLICGSPEIDVEDLKKNTEYDGGYTKNSPTIQWFWE  219

Query  179  AVRSFDKEERAKLLQFVTGTSKVPLNGFKELEGMNGVSKFNIHR-DYGNKDRLPSSHTCF  237
             +  F  E+R   L+FVTG+S++P+ GFK L       KF I R    + DRLP++HTCF
Sbjct  220  ILEEFSPEQRRLFLKFVTGSSRLPVGGFKSLP------KFTIVRKGGDDDDRLPTAHTCF  273

Query  238  NQ-----YDSYETLRQRLYTAMTAGSDYFGFA  264
            N+     Y S E L+++L  A+  G + FG +
Sbjct  274  NRLKLPDYSSKEILKEKLLIAIEEG-EGFGLS  304



Lambda      K        H        a         alpha
   0.321    0.139    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00030934

Length=58
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  72.3    7e-18


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 72.3 bits (178),  Expect = 7e-18, Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 37/59 (63%), Gaps = 2/59 (3%)

Query  1    MNGVSKFNIHR-DYGNKDRLPSSHTCFNQLDLPEYDSYETLRQRLYTAMTAGSDYFGFA  58
               + KF I R    + DRLP++HTCFN+L LP+Y S E L+++L  A+  G + FG +
Sbjct  247  FKSLPKFTIVRKGGDDDDRLPTAHTCFNRLKLPDYSSKEILKEKLLIAIEEG-EGFGLS  304



Lambda      K        H        a         alpha
   0.320    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00030935

Length=58
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase). ...  72.3    7e-18


>CDD:459880 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name 
HECT comes from Homologous to the E6-AP Carboxyl Terminus.
Length=304

 Score = 72.3 bits (178),  Expect = 7e-18, Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 37/59 (63%), Gaps = 2/59 (3%)

Query  1    MNGVSKFNIHR-DYGNKDRLPSSHTCFNQLDLPEYDSYETLRQRLYTAMTAGSDYFGFA  58
               + KF I R    + DRLP++HTCFN+L LP+Y S E L+++L  A+  G + FG +
Sbjct  247  FKSLPKFTIVRKGGDDDDRLPTAHTCFNRLKLPDYSSKEILKEKLLIAIEEG-EGFGLS  304



Lambda      K        H        a         alpha
   0.320    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00030940

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose...  120     2e-37


>CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose phosphate 
pyrophosphokinase.  This family is frequently found N-terminal 
to the Pribosyltran, pfam00156.
Length=117

 Score = 120 bits (305),  Expect = 2e-37, Method: Composition-based stats.
 Identities = 39/53 (74%), Positives = 46/53 (87%), Gaps = 0/53 (0%)

Query  1    MELLIMINACKTASARRITAVIPNFPYARQDKKDKSRAPITAKLMANMLQTAG  53
            MELLIMI+A K ASA+RITAVIP F YARQD+KDK R PITAKL+A++L+ AG
Sbjct  65   MELLIMIDALKRASAKRITAVIPYFGYARQDRKDKPREPITAKLVADLLEAAG  117



Lambda      K        H        a         alpha
   0.322    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00030937

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose...  170     2e-54
CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-a...  150     1e-45
CDD:425489 pfam00156, Pribosyltran, Phosphoribosyl transferase do...  69.7    3e-15


>CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose phosphate 
pyrophosphokinase.  This family is frequently found N-terminal 
to the Pribosyltran, pfam00156.
Length=117

 Score = 170 bits (434),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 58/90 (64%), Positives = 71/90 (79%), Gaps = 1/90 (1%)

Query  2    VLQYSNSETSVTIGESVRDEDVFILQSTKPNDINDGLMELLIMINACKTASARRITAVIP  61
            V ++S+ E  V I ESVR +DVFI+QST    +ND LMELLIMI+A K ASA+RITAVIP
Sbjct  29   VSRFSDGEIYVRIEESVRGKDVFIIQST-CPPVNDNLMELLIMIDALKRASAKRITAVIP  87

Query  62   NFPYARQDKKDKSRAPITAKLMANMLQTAG  91
             F YARQD+KDK R PITAKL+A++L+ AG
Sbjct  88   YFGYARQDRKDKPREPITAKLVADLLEAAG  117


>CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-associated 
domain.  This family includes several examples of enzymes 
from class EC:2.7.6.1, phosphoribosyl-pyrophosphate transferase.
Length=184

 Score = 150 bits (381),  Expect = 1e-45, Method: Composition-based stats.
 Identities = 75/183 (41%), Positives = 100/183 (55%), Gaps = 30/183 (16%)

Query  131  DVKNCVIVSPDAGGAKRATGIADRLDLQFALIHKE------------------RPRPNEV  172
            D +N VIV+   G AKRAT  A+RL L  A+IH E                  R R    
Sbjct  1    DYRNAVIVARSPGSAKRATSFAERLRLGIAVIHGEQKEAESDEVDGRQSPPPYRSRTVSR  60

Query  173  SR------------MVLVGNVKDKIAIIVDDMADTCGTLVKAADTVMQHGAKEVNAIVVH  220
            S             M +VG+V  +IAIIVDDM D   + V AA+ + + GA ++  +  H
Sbjct  61   SLGLPEIIPKEKPPMTVVGDVGGRIAIIVDDMIDDVDSFVAAAELLKERGAYKIYVMATH  120

Query  221  GILSGNAIENINNSCLKRLVVTNTVPHKEKKELCDKIDTIDISPTLAEACRRTHNGESVS  280
            G+LS +A   +  S +  +VVTNT+PH+ +K  C KI TIDIS  +AEA RR HNGES+S
Sbjct  121  GLLSSDAPRLLEASPIDEVVVTNTIPHEIQKMQCHKIKTIDISQLIAEAIRRIHNGESMS  180

Query  281  FLF  283
            +LF
Sbjct  181  YLF  183


>CDD:425489 pfam00156, Pribosyltran, Phosphoribosyl transferase domain.  
This family includes a range of diverse phosphoribosyl transferase 
enzymes. This family includes: Adenine phosphoribosyl-transferase 
EC:2.4.2.7, Hypoxanthine-guanine-xanthine phosphoribosyl-transferase, 
Hypoxanthine phosphoribosyl-transferase 
EC:2.4.2.8. Ribose-phosphate pyrophosphokinase i EC:2.7.6.1. 
Amidophosphoribosyltransferase EC:2.4.2.14. Orotate phosphoribosyl-transferase 
EC:2.4.2.10, Uracil phosphoribosyl-transferase 
EC:2.4.2.9, Xanthine-guanine phosphoribosyl-transferase 
EC:2.4.2.22. In Arabidopsis, at the very N-terminus of 
this domain is the P-Loop NTPase domain.
Length=150

 Score = 69.7 bits (171),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 52/119 (44%), Gaps = 10/119 (8%)

Query  112  PVDNLYAEP-------SMLKWIREHLDVKNCVIVSPDAGGAKRATGIADRLDLQFALIHK  164
             VD +   P        +   I E    K  V+V    GG   A  +A RLD+  A + K
Sbjct  1    SVDEILDNPAILKAVARLAAQINEDYGGKPDVVVGILRGGLPFAGILARRLDVPLAFVRK  60

Query  165  ERPRPN---EVSRMVLVGNVKDKIAIIVDDMADTCGTLVKAADTVMQHGAKEVNAIVVH  220
                P+    +     + ++K K  +IVDD+ DT GTL+K  + +   G KEV   V+ 
Sbjct  61   VSYNPDTSEVMKTSSALPDLKGKTVLIVDDILDTGGTLLKVLELLKNVGPKEVKIAVLI  119



Lambda      K        H        a         alpha
   0.319    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00035286

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose...  207     2e-68
CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-a...  151     2e-45
CDD:425489 pfam00156, Pribosyltran, Phosphoribosyl transferase do...  70.1    3e-15


>CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose phosphate 
pyrophosphokinase.  This family is frequently found N-terminal 
to the Pribosyltran, pfam00156.
Length=117

 Score = 207 bits (529),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 72/118 (61%), Positives = 90/118 (76%), Gaps = 1/118 (1%)

Query  6    IKLLTGNSHPELANLVAARLGIELTKIMVLQYSNSETSVTIGESVRDEDGFILQSTKPND  65
            +K+ +GNS+PELA  +A RLGI L K  V ++S+ E  V I ESVR +D FI+QST    
Sbjct  1    LKIFSGNSNPELAEKIAKRLGIPLGKATVSRFSDGEIYVRIEESVRGKDVFIIQST-CPP  59

Query  66   INDGLMELLIMINACKTASARRITAVIPNFPYARQDKKDKSRAPITAKLMANMLQTAG  123
            +ND LMELLIMI+A K ASA+RITAVIP F YARQD+KDK R PITAKL+A++L+ AG
Sbjct  60   VNDNLMELLIMIDALKRASAKRITAVIPYFGYARQDRKDKPREPITAKLVADLLEAAG  117


>CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-associated 
domain.  This family includes several examples of enzymes 
from class EC:2.7.6.1, phosphoribosyl-pyrophosphate transferase.
Length=184

 Score = 151 bits (382),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 75/183 (41%), Positives = 100/183 (55%), Gaps = 30/183 (16%)

Query  163  DVKNCVIVSPDAGGAKRATGIADRLDLQFALIHKE------------------RPRPNEV  204
            D +N VIV+   G AKRAT  A+RL L  A+IH E                  R R    
Sbjct  1    DYRNAVIVARSPGSAKRATSFAERLRLGIAVIHGEQKEAESDEVDGRQSPPPYRSRTVSR  60

Query  205  SR------------MVLVGNVKDKIAIIVDDMADTCGTLVKAADTVMQHGAKEVNAIVVH  252
            S             M +VG+V  +IAIIVDDM D   + V AA+ + + GA ++  +  H
Sbjct  61   SLGLPEIIPKEKPPMTVVGDVGGRIAIIVDDMIDDVDSFVAAAELLKERGAYKIYVMATH  120

Query  253  GILSGNAIENINNSCLKRLVVTNTVPHKEKKELCDKIDTIDISPTLAEACRRTHNGESVS  312
            G+LS +A   +  S +  +VVTNT+PH+ +K  C KI TIDIS  +AEA RR HNGES+S
Sbjct  121  GLLSSDAPRLLEASPIDEVVVTNTIPHEIQKMQCHKIKTIDISQLIAEAIRRIHNGESMS  180

Query  313  FLF  315
            +LF
Sbjct  181  YLF  183


>CDD:425489 pfam00156, Pribosyltran, Phosphoribosyl transferase domain.  
This family includes a range of diverse phosphoribosyl transferase 
enzymes. This family includes: Adenine phosphoribosyl-transferase 
EC:2.4.2.7, Hypoxanthine-guanine-xanthine phosphoribosyl-transferase, 
Hypoxanthine phosphoribosyl-transferase 
EC:2.4.2.8. Ribose-phosphate pyrophosphokinase i EC:2.7.6.1. 
Amidophosphoribosyltransferase EC:2.4.2.14. Orotate phosphoribosyl-transferase 
EC:2.4.2.10, Uracil phosphoribosyl-transferase 
EC:2.4.2.9, Xanthine-guanine phosphoribosyl-transferase 
EC:2.4.2.22. In Arabidopsis, at the very N-terminus of 
this domain is the P-Loop NTPase domain.
Length=150

 Score = 70.1 bits (172),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 52/119 (44%), Gaps = 10/119 (8%)

Query  144  PVDNLYAEP-------SMLKWIREHLDVKNCVIVSPDAGGAKRATGIADRLDLQFALIHK  196
             VD +   P        +   I E    K  V+V    GG   A  +A RLD+  A + K
Sbjct  1    SVDEILDNPAILKAVARLAAQINEDYGGKPDVVVGILRGGLPFAGILARRLDVPLAFVRK  60

Query  197  ERPRPN---EVSRMVLVGNVKDKIAIIVDDMADTCGTLVKAADTVMQHGAKEVNAIVVH  252
                P+    +     + ++K K  +IVDD+ DT GTL+K  + +   G KEV   V+ 
Sbjct  61   VSYNPDTSEVMKTSSALPDLKGKTVLIVDDILDTGGTLLKVLELLKNVGPKEVKIAVLI  119



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00030936

Length=114
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-a...  126     1e-38


>CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-associated 
domain.  This family includes several examples of enzymes 
from class EC:2.7.6.1, phosphoribosyl-pyrophosphate transferase.
Length=184

 Score = 126 bits (317),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 53/109 (49%), Positives = 74/109 (68%), Gaps = 0/109 (0%)

Query  1    MVLVGNVKDKIAIIVDDMADTCGTLVKAADTVMQHGAKEVNAIVVHGILSGNAIENINNS  60
            M +VG+V  +IAIIVDDM D   + V AA+ + + GA ++  +  HG+LS +A   +  S
Sbjct  75   MTVVGDVGGRIAIIVDDMIDDVDSFVAAAELLKERGAYKIYVMATHGLLSSDAPRLLEAS  134

Query  61   CLKRLVVTNTVPHKEKKELCDKIDTIDISPTLAEACRRTHNGESVSFLF  109
             +  +VVTNT+PH+ +K  C KI TIDIS  +AEA RR HNGES+S+LF
Sbjct  135  PIDEVVVTNTIPHEIQKMQCHKIKTIDISQLIAEAIRRIHNGESMSYLF  183



Lambda      K        H        a         alpha
   0.318    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00030938

Length=104
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-a...  117     1e-35


>CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-associated 
domain.  This family includes several examples of enzymes 
from class EC:2.7.6.1, phosphoribosyl-pyrophosphate transferase.
Length=184

 Score = 117 bits (296),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 50/104 (48%), Positives = 69/104 (66%), Gaps = 0/104 (0%)

Query  1    MVLVGNVKDKIAIIVDDMADTCGTLVKAADTVMQHGAKEVNAIVVHGILSGNAIENINNS  60
            M +VG+V  +IAIIVDDM D   + V AA+ + + GA ++  +  HG+LS +A   +  S
Sbjct  75   MTVVGDVGGRIAIIVDDMIDDVDSFVAAAELLKERGAYKIYVMATHGLLSSDAPRLLEAS  134

Query  61   CLKRLVVTNTVPHKEKKELCDKIDTIDISPTLAEACRRTHNGES  104
             +  +VVTNT+PH+ +K  C KI TIDIS  +AEA RR HNGES
Sbjct  135  PIDEVVVTNTIPHEIQKMQCHKIKTIDISQLIAEAIRRIHNGES  178



Lambda      K        H        a         alpha
   0.317    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00030939

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose...  211     3e-70
CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-a...  150     2e-45
CDD:425489 pfam00156, Pribosyltran, Phosphoribosyl transferase do...  70.1    3e-15


>CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose phosphate 
pyrophosphokinase.  This family is frequently found N-terminal 
to the Pribosyltran, pfam00156.
Length=117

 Score = 211 bits (541),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 73/118 (62%), Positives = 91/118 (77%), Gaps = 1/118 (1%)

Query  6    IKLLTGNSHPELANLVAARLGIELTKIMVLQYSNSETSVTIGESVRDEDVFILQSTKPND  65
            +K+ +GNS+PELA  +A RLGI L K  V ++S+ E  V I ESVR +DVFI+QST    
Sbjct  1    LKIFSGNSNPELAEKIAKRLGIPLGKATVSRFSDGEIYVRIEESVRGKDVFIIQST-CPP  59

Query  66   INDGLMELLIMINACKTASARRITAVIPNFPYARQDKKDKSRAPITAKLMANMLQTAG  123
            +ND LMELLIMI+A K ASA+RITAVIP F YARQD+KDK R PITAKL+A++L+ AG
Sbjct  60   VNDNLMELLIMIDALKRASAKRITAVIPYFGYARQDRKDKPREPITAKLVADLLEAAG  117


>CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-associated 
domain.  This family includes several examples of enzymes 
from class EC:2.7.6.1, phosphoribosyl-pyrophosphate transferase.
Length=184

 Score = 150 bits (381),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 75/183 (41%), Positives = 100/183 (55%), Gaps = 30/183 (16%)

Query  163  DVKNCVIVSPDAGGAKRATGIADRLDLQFALIHKE------------------RPRPNEV  204
            D +N VIV+   G AKRAT  A+RL L  A+IH E                  R R    
Sbjct  1    DYRNAVIVARSPGSAKRATSFAERLRLGIAVIHGEQKEAESDEVDGRQSPPPYRSRTVSR  60

Query  205  SR------------MVLVGNVKDKIAIIVDDMADTCGTLVKAADTVMQHGAKEVNAIVVH  252
            S             M +VG+V  +IAIIVDDM D   + V AA+ + + GA ++  +  H
Sbjct  61   SLGLPEIIPKEKPPMTVVGDVGGRIAIIVDDMIDDVDSFVAAAELLKERGAYKIYVMATH  120

Query  253  GILSGNAIENINNSCLKRLVVTNTVPHKEKKELCDKIDTIDISPTLAEACRRTHNGESVS  312
            G+LS +A   +  S +  +VVTNT+PH+ +K  C KI TIDIS  +AEA RR HNGES+S
Sbjct  121  GLLSSDAPRLLEASPIDEVVVTNTIPHEIQKMQCHKIKTIDISQLIAEAIRRIHNGESMS  180

Query  313  FLF  315
            +LF
Sbjct  181  YLF  183


>CDD:425489 pfam00156, Pribosyltran, Phosphoribosyl transferase domain.  
This family includes a range of diverse phosphoribosyl transferase 
enzymes. This family includes: Adenine phosphoribosyl-transferase 
EC:2.4.2.7, Hypoxanthine-guanine-xanthine phosphoribosyl-transferase, 
Hypoxanthine phosphoribosyl-transferase 
EC:2.4.2.8. Ribose-phosphate pyrophosphokinase i EC:2.7.6.1. 
Amidophosphoribosyltransferase EC:2.4.2.14. Orotate phosphoribosyl-transferase 
EC:2.4.2.10, Uracil phosphoribosyl-transferase 
EC:2.4.2.9, Xanthine-guanine phosphoribosyl-transferase 
EC:2.4.2.22. In Arabidopsis, at the very N-terminus of 
this domain is the P-Loop NTPase domain.
Length=150

 Score = 70.1 bits (172),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 52/119 (44%), Gaps = 10/119 (8%)

Query  144  PVDNLYAEP-------SMLKWIREHLDVKNCVIVSPDAGGAKRATGIADRLDLQFALIHK  196
             VD +   P        +   I E    K  V+V    GG   A  +A RLD+  A + K
Sbjct  1    SVDEILDNPAILKAVARLAAQINEDYGGKPDVVVGILRGGLPFAGILARRLDVPLAFVRK  60

Query  197  ERPRPN---EVSRMVLVGNVKDKIAIIVDDMADTCGTLVKAADTVMQHGAKEVNAIVVH  252
                P+    +     + ++K K  +IVDD+ DT GTL+K  + +   G KEV   V+ 
Sbjct  61   VSYNPDTSEVMKTSSALPDLKGKTVLIVDDILDTGGTLLKVLELLKNVGPKEVKIAVLI  119



Lambda      K        H        a         alpha
   0.319    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00030941

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose...  207     2e-68
CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-a...  151     2e-45
CDD:425489 pfam00156, Pribosyltran, Phosphoribosyl transferase do...  70.1    3e-15


>CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose phosphate 
pyrophosphokinase.  This family is frequently found N-terminal 
to the Pribosyltran, pfam00156.
Length=117

 Score = 207 bits (529),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 72/118 (61%), Positives = 90/118 (76%), Gaps = 1/118 (1%)

Query  6    IKLLTGNSHPELANLVAARLGIELTKIMVLQYSNSETSVTIGESVRDEDGFILQSTKPND  65
            +K+ +GNS+PELA  +A RLGI L K  V ++S+ E  V I ESVR +D FI+QST    
Sbjct  1    LKIFSGNSNPELAEKIAKRLGIPLGKATVSRFSDGEIYVRIEESVRGKDVFIIQST-CPP  59

Query  66   INDGLMELLIMINACKTASARRITAVIPNFPYARQDKKDKSRAPITAKLMANMLQTAG  123
            +ND LMELLIMI+A K ASA+RITAVIP F YARQD+KDK R PITAKL+A++L+ AG
Sbjct  60   VNDNLMELLIMIDALKRASAKRITAVIPYFGYARQDRKDKPREPITAKLVADLLEAAG  117


>CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-associated 
domain.  This family includes several examples of enzymes 
from class EC:2.7.6.1, phosphoribosyl-pyrophosphate transferase.
Length=184

 Score = 151 bits (382),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 75/183 (41%), Positives = 100/183 (55%), Gaps = 30/183 (16%)

Query  163  DVKNCVIVSPDAGGAKRATGIADRLDLQFALIHKE------------------RPRPNEV  204
            D +N VIV+   G AKRAT  A+RL L  A+IH E                  R R    
Sbjct  1    DYRNAVIVARSPGSAKRATSFAERLRLGIAVIHGEQKEAESDEVDGRQSPPPYRSRTVSR  60

Query  205  SR------------MVLVGNVKDKIAIIVDDMADTCGTLVKAADTVMQHGAKEVNAIVVH  252
            S             M +VG+V  +IAIIVDDM D   + V AA+ + + GA ++  +  H
Sbjct  61   SLGLPEIIPKEKPPMTVVGDVGGRIAIIVDDMIDDVDSFVAAAELLKERGAYKIYVMATH  120

Query  253  GILSGNAIENINNSCLKRLVVTNTVPHKEKKELCDKIDTIDISPTLAEACRRTHNGESVS  312
            G+LS +A   +  S +  +VVTNT+PH+ +K  C KI TIDIS  +AEA RR HNGES+S
Sbjct  121  GLLSSDAPRLLEASPIDEVVVTNTIPHEIQKMQCHKIKTIDISQLIAEAIRRIHNGESMS  180

Query  313  FLF  315
            +LF
Sbjct  181  YLF  183


>CDD:425489 pfam00156, Pribosyltran, Phosphoribosyl transferase domain.  
This family includes a range of diverse phosphoribosyl transferase 
enzymes. This family includes: Adenine phosphoribosyl-transferase 
EC:2.4.2.7, Hypoxanthine-guanine-xanthine phosphoribosyl-transferase, 
Hypoxanthine phosphoribosyl-transferase 
EC:2.4.2.8. Ribose-phosphate pyrophosphokinase i EC:2.7.6.1. 
Amidophosphoribosyltransferase EC:2.4.2.14. Orotate phosphoribosyl-transferase 
EC:2.4.2.10, Uracil phosphoribosyl-transferase 
EC:2.4.2.9, Xanthine-guanine phosphoribosyl-transferase 
EC:2.4.2.22. In Arabidopsis, at the very N-terminus of 
this domain is the P-Loop NTPase domain.
Length=150

 Score = 70.1 bits (172),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 52/119 (44%), Gaps = 10/119 (8%)

Query  144  PVDNLYAEP-------SMLKWIREHLDVKNCVIVSPDAGGAKRATGIADRLDLQFALIHK  196
             VD +   P        +   I E    K  V+V    GG   A  +A RLD+  A + K
Sbjct  1    SVDEILDNPAILKAVARLAAQINEDYGGKPDVVVGILRGGLPFAGILARRLDVPLAFVRK  60

Query  197  ERPRPN---EVSRMVLVGNVKDKIAIIVDDMADTCGTLVKAADTVMQHGAKEVNAIVVH  252
                P+    +     + ++K K  +IVDD+ DT GTL+K  + +   G KEV   V+ 
Sbjct  61   VSYNPDTSEVMKTSSALPDLKGKTVLIVDDILDTGGTLLKVLELLKNVGPKEVKIAVLI  119



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00030942

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose...  211     3e-70
CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-a...  150     2e-45
CDD:425489 pfam00156, Pribosyltran, Phosphoribosyl transferase do...  70.1    3e-15


>CDD:433483 pfam13793, Pribosyltran_N, N-terminal domain of ribose phosphate 
pyrophosphokinase.  This family is frequently found N-terminal 
to the Pribosyltran, pfam00156.
Length=117

 Score = 211 bits (541),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 73/118 (62%), Positives = 91/118 (77%), Gaps = 1/118 (1%)

Query  6    IKLLTGNSHPELANLVAARLGIELTKIMVLQYSNSETSVTIGESVRDEDVFILQSTKPND  65
            +K+ +GNS+PELA  +A RLGI L K  V ++S+ E  V I ESVR +DVFI+QST    
Sbjct  1    LKIFSGNSNPELAEKIAKRLGIPLGKATVSRFSDGEIYVRIEESVRGKDVFIIQST-CPP  59

Query  66   INDGLMELLIMINACKTASARRITAVIPNFPYARQDKKDKSRAPITAKLMANMLQTAG  123
            +ND LMELLIMI+A K ASA+RITAVIP F YARQD+KDK R PITAKL+A++L+ AG
Sbjct  60   VNDNLMELLIMIDALKRASAKRITAVIPYFGYARQDRKDKPREPITAKLVADLLEAAG  117


>CDD:434046 pfam14572, Pribosyl_synth, Phosphoribosyl synthetase-associated 
domain.  This family includes several examples of enzymes 
from class EC:2.7.6.1, phosphoribosyl-pyrophosphate transferase.
Length=184

 Score = 150 bits (381),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 75/183 (41%), Positives = 100/183 (55%), Gaps = 30/183 (16%)

Query  163  DVKNCVIVSPDAGGAKRATGIADRLDLQFALIHKE------------------RPRPNEV  204
            D +N VIV+   G AKRAT  A+RL L  A+IH E                  R R    
Sbjct  1    DYRNAVIVARSPGSAKRATSFAERLRLGIAVIHGEQKEAESDEVDGRQSPPPYRSRTVSR  60

Query  205  SR------------MVLVGNVKDKIAIIVDDMADTCGTLVKAADTVMQHGAKEVNAIVVH  252
            S             M +VG+V  +IAIIVDDM D   + V AA+ + + GA ++  +  H
Sbjct  61   SLGLPEIIPKEKPPMTVVGDVGGRIAIIVDDMIDDVDSFVAAAELLKERGAYKIYVMATH  120

Query  253  GILSGNAIENINNSCLKRLVVTNTVPHKEKKELCDKIDTIDISPTLAEACRRTHNGESVS  312
            G+LS +A   +  S +  +VVTNT+PH+ +K  C KI TIDIS  +AEA RR HNGES+S
Sbjct  121  GLLSSDAPRLLEASPIDEVVVTNTIPHEIQKMQCHKIKTIDISQLIAEAIRRIHNGESMS  180

Query  313  FLF  315
            +LF
Sbjct  181  YLF  183


>CDD:425489 pfam00156, Pribosyltran, Phosphoribosyl transferase domain.  
This family includes a range of diverse phosphoribosyl transferase 
enzymes. This family includes: Adenine phosphoribosyl-transferase 
EC:2.4.2.7, Hypoxanthine-guanine-xanthine phosphoribosyl-transferase, 
Hypoxanthine phosphoribosyl-transferase 
EC:2.4.2.8. Ribose-phosphate pyrophosphokinase i EC:2.7.6.1. 
Amidophosphoribosyltransferase EC:2.4.2.14. Orotate phosphoribosyl-transferase 
EC:2.4.2.10, Uracil phosphoribosyl-transferase 
EC:2.4.2.9, Xanthine-guanine phosphoribosyl-transferase 
EC:2.4.2.22. In Arabidopsis, at the very N-terminus of 
this domain is the P-Loop NTPase domain.
Length=150

 Score = 70.1 bits (172),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 52/119 (44%), Gaps = 10/119 (8%)

Query  144  PVDNLYAEP-------SMLKWIREHLDVKNCVIVSPDAGGAKRATGIADRLDLQFALIHK  196
             VD +   P        +   I E    K  V+V    GG   A  +A RLD+  A + K
Sbjct  1    SVDEILDNPAILKAVARLAAQINEDYGGKPDVVVGILRGGLPFAGILARRLDVPLAFVRK  60

Query  197  ERPRPN---EVSRMVLVGNVKDKIAIIVDDMADTCGTLVKAADTVMQHGAKEVNAIVVH  252
                P+    +     + ++K K  +IVDD+ DT GTL+K  + +   G KEV   V+ 
Sbjct  61   VSYNPDTSEVMKTSSALPDLKGKTVLIVDDILDTGGTLLKVLELLKNVGPKEVKIAVLI  119



Lambda      K        H        a         alpha
   0.319    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00030943

Length=354


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00030945

Length=327


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00030944

Length=327


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00030947

Length=286


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00030946

Length=266


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00035289

Length=354


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00035288

Length=354


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00030948

Length=328


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00030949

Length=442


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0733    0.140     1.90     42.6     43.6 

Effective search space used: 539863808


Query= TCONS_00030950

Length=688
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box          90.4    7e-23


>CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box.  
Length=68

 Score = 90.4 bits (225),  Expect = 7e-23, Method: Composition-based stats.
 Identities = 31/68 (46%), Positives = 50/68 (74%), Gaps = 0/68 (0%)

Query  142  IPRPRNAFILYRQHYQAAVVAQNPGLANPDISKIIGEQWRKLPQETKDEWKALAEEEKAR  201
              RP +AF L+ +  +A + A+NPGL N +ISKI+GE+W+ L +E K  ++  AE+EKAR
Sbjct  1    PKRPMSAFFLFSKEQRAKLKAENPGLKNAEISKILGEKWKALSEEEKKPYEEKAEKEKAR  60

Query  202  HQQQYPEY  209
            +++++PEY
Sbjct  61   YEKEHPEY  68



Lambda      K        H        a         alpha
   0.314    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 877500050


Query= TCONS_00030951

Length=688
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box          88.1    6e-22


>CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box.  
Length=68

 Score = 88.1 bits (219),  Expect = 6e-22, Method: Composition-based stats.
 Identities = 31/68 (46%), Positives = 49/68 (72%), Gaps = 0/68 (0%)

Query  142  IPRPRNAFILYRQHYQAAVVAQNPGLANPDISKIIGEQWRKLPQETKDEWKALAEVEKAR  201
              RP +AF L+ +  +A + A+NPGL N +ISKI+GE+W+ L +E K  ++  AE EKAR
Sbjct  1    PKRPMSAFFLFSKEQRAKLKAENPGLKNAEISKILGEKWKALSEEEKKPYEEKAEKEKAR  60

Query  202  HQQQYPEY  209
            +++++PEY
Sbjct  61   YEKEHPEY  68



Lambda      K        H        a         alpha
   0.314    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 877500050


Query= TCONS_00035290

Length=442


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 539863808


Query= TCONS_00030952

Length=339


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00030953

Length=1199


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1538654276


Query= TCONS_00030954

Length=339


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00035292

Length=314


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00035293

Length=1084


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1378086906


Query= TCONS_00035294

Length=339


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00030955

Length=339


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00030956

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00030957

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00030960

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain. Th...  159     4e-50
CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Th...  142     1e-41


>CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=123

 Score = 159 bits (404),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 60/120 (50%), Positives = 84/120 (70%), Gaps = 0/120 (0%)

Query  151  QKIIGKYVAASVVGVKPLLMGIGPWKAIPVALEKAGITKDEVDIYEINEAFASQCVWCVN  210
             K + +  + +  GV P +MGIGP  AIP AL+KAG+T +++D++EINEAFA+Q +    
Sbjct  1    LKPLARIRSYATAGVDPAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQALAVAK  60

Query  211  ELGLPHEKINPKGGAIAFGHPLGCTGARQISTLLTELKRTNKKVGVTSMCVGTGMGMAAV  270
            +LG+  EK+N  GGAIA GHPLG +GAR + TLL ELKR   K G+ S+C+G G G+A +
Sbjct  61   DLGIDPEKVNVNGGAIALGHPLGASGARILVTLLHELKRRGGKYGLASLCIGGGQGVAMI  120


>CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=260

 Score = 142 bits (359),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 65/143 (45%), Positives = 81/143 (57%), Gaps = 7/143 (5%)

Query  3    INVRPGRP-GAVTEFSELLESHPESANCKVPMGVLSEQMAKDRNISRAVQDAFAASSYQK  61
             + R G   G   +   L+      A     MG+ +E +AK   ISR  QDAFA  S+QK
Sbjct  124  TDARSGLKHGDEKKHDLLIPDGLTDAFNGYHMGLTAENVAKKYGISREEQDAFAVKSHQK  183

Query  62   AVKAQKAGLFNEEIVPLQVKWTDPKTGEEKTITVKADDGIRDGITPESLGKIRPAFAKDG  121
            A  A KAG F +EIVP+ VK    K       TV  D+GIR   T E L K++PAF K+G
Sbjct  184  AAAAPKAGKFKDEIVPVTVKGRKGKP------TVDKDEGIRPPTTAEPLAKLKPAFDKEG  237

Query  122  SIHAGNASQISDGAAAVLLMKRS  144
            ++ AGNAS I+DGAAAVLLM  S
Sbjct  238  TVTAGNASPINDGAAAVLLMSES  260



Lambda      K        H        a         alpha
   0.315    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00030959

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain. Th...  159     4e-50
CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Th...  142     1e-41


>CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=123

 Score = 159 bits (404),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 60/120 (50%), Positives = 84/120 (70%), Gaps = 0/120 (0%)

Query  151  QKIIGKYVAASVVGVKPLLMGIGPWKAIPVALEKAGITKDEVDIYEINEAFASQCVWCVN  210
             K + +  + +  GV P +MGIGP  AIP AL+KAG+T +++D++EINEAFA+Q +    
Sbjct  1    LKPLARIRSYATAGVDPAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQALAVAK  60

Query  211  ELGLPHEKINPKGGAIAFGHPLGCTGARQISTLLTELKRTNKKVGVTSMCVGTGMGMAAV  270
            +LG+  EK+N  GGAIA GHPLG +GAR + TLL ELKR   K G+ S+C+G G G+A +
Sbjct  61   DLGIDPEKVNVNGGAIALGHPLGASGARILVTLLHELKRRGGKYGLASLCIGGGQGVAMI  120


>CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=260

 Score = 142 bits (359),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 65/143 (45%), Positives = 81/143 (57%), Gaps = 7/143 (5%)

Query  3    INVRPGRP-GAVTEFSELLESHPESANCKVPMGVLSEQMAKDRNISRAVQDAFAASSYQK  61
             + R G   G   +   L+      A     MG+ +E +AK   ISR  QDAFA  S+QK
Sbjct  124  TDARSGLKHGDEKKHDLLIPDGLTDAFNGYHMGLTAENVAKKYGISREEQDAFAVKSHQK  183

Query  62   AVKAQKAGLFNEEIVPLQVKWTDPKTGEEKTITVKADDGIRDGITPESLGKIRPAFAKDG  121
            A  A KAG F +EIVP+ VK    K       TV  D+GIR   T E L K++PAF K+G
Sbjct  184  AAAAPKAGKFKDEIVPVTVKGRKGKP------TVDKDEGIRPPTTAEPLAKLKPAFDKEG  237

Query  122  SIHAGNASQISDGAAAVLLMKRS  144
            ++ AGNAS I+DGAAAVLLM  S
Sbjct  238  TVTAGNASPINDGAAAVLLMSES  260



Lambda      K        H        a         alpha
   0.315    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00030961

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00030962

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00035295

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00035296

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00030964

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain. Th...  159     4e-50
CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Th...  142     1e-41


>CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=123

 Score = 159 bits (404),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 60/120 (50%), Positives = 84/120 (70%), Gaps = 0/120 (0%)

Query  151  QKIIGKYVAASVVGVKPLLMGIGPWKAIPVALEKAGITKDEVDIYEINEAFASQCVWCVN  210
             K + +  + +  GV P +MGIGP  AIP AL+KAG+T +++D++EINEAFA+Q +    
Sbjct  1    LKPLARIRSYATAGVDPAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQALAVAK  60

Query  211  ELGLPHEKINPKGGAIAFGHPLGCTGARQISTLLTELKRTNKKVGVTSMCVGTGMGMAAV  270
            +LG+  EK+N  GGAIA GHPLG +GAR + TLL ELKR   K G+ S+C+G G G+A +
Sbjct  61   DLGIDPEKVNVNGGAIALGHPLGASGARILVTLLHELKRRGGKYGLASLCIGGGQGVAMI  120


>CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=260

 Score = 142 bits (359),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 65/143 (45%), Positives = 81/143 (57%), Gaps = 7/143 (5%)

Query  3    INVRPGRP-GAVTEFSELLESHPESANCKVPMGVLSEQMAKDRNISRAVQDAFAASSYQK  61
             + R G   G   +   L+      A     MG+ +E +AK   ISR  QDAFA  S+QK
Sbjct  124  TDARSGLKHGDEKKHDLLIPDGLTDAFNGYHMGLTAENVAKKYGISREEQDAFAVKSHQK  183

Query  62   AVKAQKAGLFNEEIVPLQVKWTDPKTGEEKTITVKADDGIRDGITPESLGKIRPAFAKDG  121
            A  A KAG F +EIVP+ VK    K       TV  D+GIR   T E L K++PAF K+G
Sbjct  184  AAAAPKAGKFKDEIVPVTVKGRKGKP------TVDKDEGIRPPTTAEPLAKLKPAFDKEG  237

Query  122  SIHAGNASQISDGAAAVLLMKRS  144
            ++ AGNAS I+DGAAAVLLM  S
Sbjct  238  TVTAGNASPINDGAAAVLLMSES  260



Lambda      K        H        a         alpha
   0.315    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00030963

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain. Th...  159     4e-50
CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Th...  142     1e-41


>CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=123

 Score = 159 bits (404),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 60/120 (50%), Positives = 84/120 (70%), Gaps = 0/120 (0%)

Query  151  QKIIGKYVAASVVGVKPLLMGIGPWKAIPVALEKAGITKDEVDIYEINEAFASQCVWCVN  210
             K + +  + +  GV P +MGIGP  AIP AL+KAG+T +++D++EINEAFA+Q +    
Sbjct  1    LKPLARIRSYATAGVDPAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQALAVAK  60

Query  211  ELGLPHEKINPKGGAIAFGHPLGCTGARQISTLLTELKRTNKKVGVTSMCVGTGMGMAAV  270
            +LG+  EK+N  GGAIA GHPLG +GAR + TLL ELKR   K G+ S+C+G G G+A +
Sbjct  61   DLGIDPEKVNVNGGAIALGHPLGASGARILVTLLHELKRRGGKYGLASLCIGGGQGVAMI  120


>CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=260

 Score = 142 bits (359),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 65/143 (45%), Positives = 81/143 (57%), Gaps = 7/143 (5%)

Query  3    INVRPGRP-GAVTEFSELLESHPESANCKVPMGVLSEQMAKDRNISRAVQDAFAASSYQK  61
             + R G   G   +   L+      A     MG+ +E +AK   ISR  QDAFA  S+QK
Sbjct  124  TDARSGLKHGDEKKHDLLIPDGLTDAFNGYHMGLTAENVAKKYGISREEQDAFAVKSHQK  183

Query  62   AVKAQKAGLFNEEIVPLQVKWTDPKTGEEKTITVKADDGIRDGITPESLGKIRPAFAKDG  121
            A  A KAG F +EIVP+ VK    K       TV  D+GIR   T E L K++PAF K+G
Sbjct  184  AAAAPKAGKFKDEIVPVTVKGRKGKP------TVDKDEGIRPPTTAEPLAKLKPAFDKEG  237

Query  122  SIHAGNASQISDGAAAVLLMKRS  144
            ++ AGNAS I+DGAAAVLLM  S
Sbjct  238  TVTAGNASPINDGAAAVLLMSES  260



Lambda      K        H        a         alpha
   0.315    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00030967

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain. Th...  159     4e-50
CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Th...  142     1e-41


>CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=123

 Score = 159 bits (404),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 60/120 (50%), Positives = 84/120 (70%), Gaps = 0/120 (0%)

Query  151  QKIIGKYVAASVVGVKPLLMGIGPWKAIPVALEKAGITKDEVDIYEINEAFASQCVWCVN  210
             K + +  + +  GV P +MGIGP  AIP AL+KAG+T +++D++EINEAFA+Q +    
Sbjct  1    LKPLARIRSYATAGVDPAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQALAVAK  60

Query  211  ELGLPHEKINPKGGAIAFGHPLGCTGARQISTLLTELKRTNKKVGVTSMCVGTGMGMAAV  270
            +LG+  EK+N  GGAIA GHPLG +GAR + TLL ELKR   K G+ S+C+G G G+A +
Sbjct  61   DLGIDPEKVNVNGGAIALGHPLGASGARILVTLLHELKRRGGKYGLASLCIGGGQGVAMI  120


>CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=260

 Score = 142 bits (359),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 65/143 (45%), Positives = 81/143 (57%), Gaps = 7/143 (5%)

Query  3    INVRPGRP-GAVTEFSELLESHPESANCKVPMGVLSEQMAKDRNISRAVQDAFAASSYQK  61
             + R G   G   +   L+      A     MG+ +E +AK   ISR  QDAFA  S+QK
Sbjct  124  TDARSGLKHGDEKKHDLLIPDGLTDAFNGYHMGLTAENVAKKYGISREEQDAFAVKSHQK  183

Query  62   AVKAQKAGLFNEEIVPLQVKWTDPKTGEEKTITVKADDGIRDGITPESLGKIRPAFAKDG  121
            A  A KAG F +EIVP+ VK    K       TV  D+GIR   T E L K++PAF K+G
Sbjct  184  AAAAPKAGKFKDEIVPVTVKGRKGKP------TVDKDEGIRPPTTAEPLAKLKPAFDKEG  237

Query  122  SIHAGNASQISDGAAAVLLMKRS  144
            ++ AGNAS I+DGAAAVLLM  S
Sbjct  238  TVTAGNASPINDGAAAVLLMSES  260



Lambda      K        H        a         alpha
   0.315    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00030965

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain. Th...  159     4e-50
CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Th...  142     1e-41


>CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=123

 Score = 159 bits (404),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 60/120 (50%), Positives = 84/120 (70%), Gaps = 0/120 (0%)

Query  151  QKIIGKYVAASVVGVKPLLMGIGPWKAIPVALEKAGITKDEVDIYEINEAFASQCVWCVN  210
             K + +  + +  GV P +MGIGP  AIP AL+KAG+T +++D++EINEAFA+Q +    
Sbjct  1    LKPLARIRSYATAGVDPAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQALAVAK  60

Query  211  ELGLPHEKINPKGGAIAFGHPLGCTGARQISTLLTELKRTNKKVGVTSMCVGTGMGMAAV  270
            +LG+  EK+N  GGAIA GHPLG +GAR + TLL ELKR   K G+ S+C+G G G+A +
Sbjct  61   DLGIDPEKVNVNGGAIALGHPLGASGARILVTLLHELKRRGGKYGLASLCIGGGQGVAMI  120


>CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=260

 Score = 142 bits (359),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 65/143 (45%), Positives = 81/143 (57%), Gaps = 7/143 (5%)

Query  3    INVRPGRP-GAVTEFSELLESHPESANCKVPMGVLSEQMAKDRNISRAVQDAFAASSYQK  61
             + R G   G   +   L+      A     MG+ +E +AK   ISR  QDAFA  S+QK
Sbjct  124  TDARSGLKHGDEKKHDLLIPDGLTDAFNGYHMGLTAENVAKKYGISREEQDAFAVKSHQK  183

Query  62   AVKAQKAGLFNEEIVPLQVKWTDPKTGEEKTITVKADDGIRDGITPESLGKIRPAFAKDG  121
            A  A KAG F +EIVP+ VK    K       TV  D+GIR   T E L K++PAF K+G
Sbjct  184  AAAAPKAGKFKDEIVPVTVKGRKGKP------TVDKDEGIRPPTTAEPLAKLKPAFDKEG  237

Query  122  SIHAGNASQISDGAAAVLLMKRS  144
            ++ AGNAS I+DGAAAVLLM  S
Sbjct  238  TVTAGNASPINDGAAAVLLMSES  260



Lambda      K        H        a         alpha
   0.315    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00030966

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00030968

Length=87
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464920 pfam15879, MWFE, NADH-ubiquinone oxidoreductase MWFE s...  89.5    3e-26


>CDD:464920 pfam15879, MWFE, NADH-ubiquinone oxidoreductase MWFE subunit. 
 MWFE is a short subunit of NADH-ubiquinone oxidoreductase 
found in eukaryotes. It is necessary for the activity of NADH-ubiquinone 
oxidoreductase complex I in mitochondria. This 
subunit is essential for the assembly and function of the enzyme. 
MWFE is found to be phosphorylated, eg in rat heart mitochondria. 
The short family includes much of a signal peptide.
Length=55

 Score = 89.5 bits (223),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 34/55 (62%), Positives = 37/55 (67%), Gaps = 0/55 (0%)

Query  4   PFEALIPYGIIIAMFGVTGAGLTAAKYFGNEGKKARWNKDLWDRQMMERDLRITG  58
            FEAL P+GII  MFGV G GL A     N GK  R+N D WDRQMMERD R+TG
Sbjct  1   WFEALPPFGIITVMFGVPGYGLAAIHKLQNGGKPRRYNLDQWDRQMMERDRRLTG  55



Lambda      K        H        a         alpha
   0.323    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00035297

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain. Th...  159     4e-50
CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Th...  142     1e-41


>CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=123

 Score = 159 bits (404),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 60/120 (50%), Positives = 84/120 (70%), Gaps = 0/120 (0%)

Query  151  QKIIGKYVAASVVGVKPLLMGIGPWKAIPVALEKAGITKDEVDIYEINEAFASQCVWCVN  210
             K + +  + +  GV P +MGIGP  AIP AL+KAG+T +++D++EINEAFA+Q +    
Sbjct  1    LKPLARIRSYATAGVDPAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQALAVAK  60

Query  211  ELGLPHEKINPKGGAIAFGHPLGCTGARQISTLLTELKRTNKKVGVTSMCVGTGMGMAAV  270
            +LG+  EK+N  GGAIA GHPLG +GAR + TLL ELKR   K G+ S+C+G G G+A +
Sbjct  61   DLGIDPEKVNVNGGAIALGHPLGASGARILVTLLHELKRRGGKYGLASLCIGGGQGVAMI  120


>CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=260

 Score = 142 bits (359),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 65/143 (45%), Positives = 81/143 (57%), Gaps = 7/143 (5%)

Query  3    INVRPGRP-GAVTEFSELLESHPESANCKVPMGVLSEQMAKDRNISRAVQDAFAASSYQK  61
             + R G   G   +   L+      A     MG+ +E +AK   ISR  QDAFA  S+QK
Sbjct  124  TDARSGLKHGDEKKHDLLIPDGLTDAFNGYHMGLTAENVAKKYGISREEQDAFAVKSHQK  183

Query  62   AVKAQKAGLFNEEIVPLQVKWTDPKTGEEKTITVKADDGIRDGITPESLGKIRPAFAKDG  121
            A  A KAG F +EIVP+ VK    K       TV  D+GIR   T E L K++PAF K+G
Sbjct  184  AAAAPKAGKFKDEIVPVTVKGRKGKP------TVDKDEGIRPPTTAEPLAKLKPAFDKEG  237

Query  122  SIHAGNASQISDGAAAVLLMKRS  144
            ++ AGNAS I+DGAAAVLLM  S
Sbjct  238  TVTAGNASPINDGAAAVLLMSES  260



Lambda      K        H        a         alpha
   0.315    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00030969

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain. Th...  159     4e-50
CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Th...  142     1e-41


>CDD:397094 pfam02803, Thiolase_C, Thiolase, C-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=123

 Score = 159 bits (404),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 60/120 (50%), Positives = 84/120 (70%), Gaps = 0/120 (0%)

Query  151  QKIIGKYVAASVVGVKPLLMGIGPWKAIPVALEKAGITKDEVDIYEINEAFASQCVWCVN  210
             K + +  + +  GV P +MGIGP  AIP AL+KAG+T +++D++EINEAFA+Q +    
Sbjct  1    LKPLARIRSYATAGVDPAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQALAVAK  60

Query  211  ELGLPHEKINPKGGAIAFGHPLGCTGARQISTLLTELKRTNKKVGVTSMCVGTGMGMAAV  270
            +LG+  EK+N  GGAIA GHPLG +GAR + TLL ELKR   K G+ S+C+G G G+A +
Sbjct  61   DLGIDPEKVNVNGGAIALGHPLGASGARILVTLLHELKRRGGKYGLASLCIGGGQGVAMI  120


>CDD:459676 pfam00108, Thiolase_N, Thiolase, N-terminal domain.  Thiolase 
is reported to be structurally related to beta-ketoacyl synthase 
(pfam00109), and also chalcone synthase.
Length=260

 Score = 142 bits (359),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 65/143 (45%), Positives = 81/143 (57%), Gaps = 7/143 (5%)

Query  3    INVRPGRP-GAVTEFSELLESHPESANCKVPMGVLSEQMAKDRNISRAVQDAFAASSYQK  61
             + R G   G   +   L+      A     MG+ +E +AK   ISR  QDAFA  S+QK
Sbjct  124  TDARSGLKHGDEKKHDLLIPDGLTDAFNGYHMGLTAENVAKKYGISREEQDAFAVKSHQK  183

Query  62   AVKAQKAGLFNEEIVPLQVKWTDPKTGEEKTITVKADDGIRDGITPESLGKIRPAFAKDG  121
            A  A KAG F +EIVP+ VK    K       TV  D+GIR   T E L K++PAF K+G
Sbjct  184  AAAAPKAGKFKDEIVPVTVKGRKGKP------TVDKDEGIRPPTTAEPLAKLKPAFDKEG  237

Query  122  SIHAGNASQISDGAAAVLLMKRS  144
            ++ AGNAS I+DGAAAVLLM  S
Sbjct  238  TVTAGNASPINDGAAAVLLMSES  260



Lambda      K        H        a         alpha
   0.315    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00030970

Length=273


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00035298

Length=363


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00035299

Length=273


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0827    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00035300

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00035301

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00030971

Length=273


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00030972

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00030973

Length=937
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein. ...  363     8e-118


>CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein.  This family 
includes a conserved region from a group of yeast proteins 
that associate with the SIT4 phosphatase. This association 
is required for SIT4's role in G1 cyclin transcription and 
for bud formation. This family also includes homologous regions 
from other eukaryotes.
Length=383

 Score = 363 bits (933),  Expect = 8e-118, Method: Composition-based stats.
 Identities = 131/261 (50%), Positives = 167/261 (64%), Gaps = 17/261 (7%)

Query  173  NETLFDRKTSEMLEFFKSLEGIVPAILQHVDNPMVMDLLLKIISLEKAEGGQGIVDWLKT  232
            NE L DRKT +M+EF +  E  V   L+H+D P +MDLLLK+IS +K E   G+++WL  
Sbjct  1    NENLLDRKTDQMIEFIRKQENFVDKFLKHIDTPAIMDLLLKLISTDKPELPTGVIEWLNE  60

Query  233  QNLIPILLSFLTPEHPASVQTSAGDFLKAIITISANATQNDQSCIGPNSLTRQLVSAQCV  292
            QNLIP LL  L+P +   +Q++A DFLKAIITIS NA    QS IGPN LTR+LVS + V
Sbjct  61   QNLIPKLLDLLSPSYDEDIQSNASDFLKAIITISRNAPLQLQSSIGPNELTRELVSEESV  120

Query  293  ETLITAMLQG--GNPLTVGVGIVIEVIRKNNSDYDPETIG---GPDSPPTTYDPIYLGNL  347
            E L+  ML+G  G+ L  GVGI+IE+IRKNNSDYDP  +      + PP+  DPIYLG+L
Sbjct  121  EKLLDNMLKGKSGSALVNGVGIIIELIRKNNSDYDPVQLLYTTLEEHPPSDRDPIYLGHL  180

Query  348  LRIFAKHIPDFMALIRSSKHTISDNGKVRSVERGQLSSAWGAKIEPLGFDRFKTCELMAE  407
            LR F+ H+PDF  L+                    L +  G  IEPLGF+RFK  EL+AE
Sbjct  181  LRAFSPHLPDFHQLLLDPPKDSP------------LQTTLGVLIEPLGFERFKIVELIAE  228

Query  408  LLHCSNMGLLNEPGSDEYVRQ  428
            LLHCSNM LLNE   ++   +
Sbjct  229  LLHCSNMSLLNEKKGEKLKIK  249


 Score = 240 bits (616),  Expect = 6e-72, Method: Composition-based stats.
 Identities = 85/141 (60%), Positives = 106/141 (75%), Gaps = 0/141 (0%)

Query  681  GDYLKIMFVKNQVVPTILDFFFRFPWNNFLHNVVYDVVQQVFNGPMERGYNRCLAIDLFE  740
            G+ LKI  V   ++PTILD FF++PWNNFLHNVV D++QQ+ NGPM+  YN  L +DLF 
Sbjct  243  GEKLKIKLVDLGIIPTILDLFFKYPWNNFLHNVVEDIIQQILNGPMDFSYNSFLVVDLFT  302

Query  741  TGRITQAIVAGQKRSDEAQRTQRIRLGYMGHLTLIAEEVVKFSERHPPELLSPTVMESVL  800
               +TQ I+ GQK SD  Q  +  RLGYMGHLTLIAEEVVKFSE++PPEL+SP ++E + 
Sbjct  303  DCNLTQRILEGQKESDRFQAEKGPRLGYMGHLTLIAEEVVKFSEKYPPELISPDILEILE  362

Query  801  NPEWIDYVEQTLSETRERDNA  821
            N EW +YVE+TL ETRER N 
Sbjct  363  NEEWEEYVEETLEETRERYNV  383



Lambda      K        H        a         alpha
   0.312    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1208702788


Query= TCONS_00035303

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426327 pfam01566, Nramp, Natural resistance-associated macrop...  174     6e-52


>CDD:426327 pfam01566, Nramp, Natural resistance-associated macrophage protein. 
 The natural resistance-associated macrophage protein 
(NRAMP) family consists of Nramp1, Nramp2, and yeast proteins 
Smf1 and Smf2. The NRAMP family is a novel family of functional 
related proteins defined by a conserved hydrophobic core 
of ten transmembrane domains. This family of membrane proteins 
are divalent cation transporters. Nramp1 is an integral 
membrane protein expressed exclusively in cells of the immune 
system and is recruited to the membrane of a phagosome 
upon phagocytosis. By controlling divalent cation concentrations 
Nramp1 may regulate the interphagosomal replication of 
bacteria. Mutations in Nramp1 may genetically predispose an 
individual to susceptibility to diseases including leprosy and 
tuberculosis conversely this might however provide protection 
form rheumatoid arthritis. Nramp2 is a multiple divalent 
cation transporter for Fe2+, Mn2+ and Zn2+ amongst others 
it is expressed at high levels in the intestine; and is major 
transferrin-independent iron uptake system in mammals. The 
yeast proteins Smf1 and Smf2 may also transport divalent cations.
Length=356

 Score = 174 bits (444),  Expect = 6e-52, Method: Composition-based stats.
 Identities = 114/308 (37%), Positives = 154/308 (50%), Gaps = 33/308 (11%)

Query  1    MVVGSAIALNLLLKIPLVAGCAITLADVLFLLIFYRPNGSIWGLRLFEYFVMALVLGVVV  60
             V+G AIALNLL  IPL  G  IT   VL LL          G R  E  ++ LVL + +
Sbjct  75   EVIGGAIALNLLFGIPLWIGVLITAVLVLLLLFQKG------GYRKLEKVIIGLVLVIAL  128

Query  61   CFCIQLSLIREQSVRDVFRGYLPSSAIVQSKGLYQSCGILGATVMPHSIFLGSGVVQPRL  120
             F  +L L++      V  G +  S    S  L  + GILGATVMPH++FL S +VQ R 
Sbjct  129  SFIAELFLVK-PDWGAVAAGLVVPS-FPGSGSLLLAVGILGATVMPHNLFLHSSLVQER-  185

Query  121  KEFDVTKGYVDPAVCLGSTDGKVEYRPSIHAIRGCMKYSIIELSLSLFTFALFVNSSILI  180
                                    +          ++YS I+  ++L   A  VN++ILI
Sbjct  186  -----------------------GWTIDRDEEDEALRYSRIDTIIALI-VAGLVNAAILI  221

Query  181  VAGASLYGSSGADNADLWGIHDLLSSSIAPVAGLIFALALLLSGISAGIVCTMAGQMVSE  240
            VA A+ +GS G D A L      L   +   A ++FAL LL +G+S+ I  T+AGQ V E
Sbjct  222  VAAAAFHGSGGIDVATLADAAAALEPLLGKAAAVLFALGLLAAGLSSTITGTLAGQYVME  281

Query  241  GMLKWTIRPWLRRLITRSISIIPSIIIAAAVGKDGLDKTLTASQVVLSVILPFVTAPLIY  300
            G L W I  WLRRLITR+I+  P++ +    G  G+ + L  SQVVLS+ LPF   PL+ 
Sbjct  282  GFLGWRIPLWLRRLITRAIAFYPALAVILLGGAPGVVQLLVLSQVVLSLQLPFALIPLLL  341

Query  301  FTCRNRYM  308
             T   + M
Sbjct  342  LTSDRKLM  349



Lambda      K        H        a         alpha
   0.327    0.141    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00035304

Length=700
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein. ...  362     3e-120


>CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein.  This family 
includes a conserved region from a group of yeast proteins 
that associate with the SIT4 phosphatase. This association 
is required for SIT4's role in G1 cyclin transcription and 
for bud formation. This family also includes homologous regions 
from other eukaryotes.
Length=383

 Score = 362 bits (932),  Expect = 3e-120, Method: Composition-based stats.
 Identities = 131/261 (50%), Positives = 167/261 (64%), Gaps = 17/261 (7%)

Query  173  NETLFDRKTSEMLEFFKSLEGIVPAILQHVDNPMVMDLLLKIISLEKAEGGQGIVDWLKT  232
            NE L DRKT +M+EF +  E  V   L+H+D P +MDLLLK+IS +K E   G+++WL  
Sbjct  1    NENLLDRKTDQMIEFIRKQENFVDKFLKHIDTPAIMDLLLKLISTDKPELPTGVIEWLNE  60

Query  233  QNLIPILLSFLTPEHPASVQTSAGDFLKAIITISANATQNDQSCIGPNSLTRQLVSAQCV  292
            QNLIP LL  L+P +   +Q++A DFLKAIITIS NA    QS IGPN LTR+LVS + V
Sbjct  61   QNLIPKLLDLLSPSYDEDIQSNASDFLKAIITISRNAPLQLQSSIGPNELTRELVSEESV  120

Query  293  ETLITAMLQG--GNPLTVGVGIVIEVIRKNNSDYDPETIG---GPDSPPTTYDPIYLGNL  347
            E L+  ML+G  G+ L  GVGI+IE+IRKNNSDYDP  +      + PP+  DPIYLG+L
Sbjct  121  EKLLDNMLKGKSGSALVNGVGIIIELIRKNNSDYDPVQLLYTTLEEHPPSDRDPIYLGHL  180

Query  348  LRIFAKHIPDFMALIRSSKHTISDNGKVRSVERGQLSSAWGAKIEPLGFDRFKTCELMAE  407
            LR F+ H+PDF  L+                    L +  G  IEPLGF+RFK  EL+AE
Sbjct  181  LRAFSPHLPDFHQLLLDPPKDSP------------LQTTLGVLIEPLGFERFKIVELIAE  228

Query  408  LLHCSNMGLLNEPGSDEYVRQ  428
            LLHCSNM LLNE   ++   +
Sbjct  229  LLHCSNMSLLNEKKGEKLKIK  249



Lambda      K        H        a         alpha
   0.311    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 895197530


Query= TCONS_00030974

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426327 pfam01566, Nramp, Natural resistance-associated macrop...  279     6e-90


>CDD:426327 pfam01566, Nramp, Natural resistance-associated macrophage protein. 
 The natural resistance-associated macrophage protein 
(NRAMP) family consists of Nramp1, Nramp2, and yeast proteins 
Smf1 and Smf2. The NRAMP family is a novel family of functional 
related proteins defined by a conserved hydrophobic core 
of ten transmembrane domains. This family of membrane proteins 
are divalent cation transporters. Nramp1 is an integral 
membrane protein expressed exclusively in cells of the immune 
system and is recruited to the membrane of a phagosome 
upon phagocytosis. By controlling divalent cation concentrations 
Nramp1 may regulate the interphagosomal replication of 
bacteria. Mutations in Nramp1 may genetically predispose an 
individual to susceptibility to diseases including leprosy and 
tuberculosis conversely this might however provide protection 
form rheumatoid arthritis. Nramp2 is a multiple divalent 
cation transporter for Fe2+, Mn2+ and Zn2+ amongst others 
it is expressed at high levels in the intestine; and is major 
transferrin-independent iron uptake system in mammals. The 
yeast proteins Smf1 and Smf2 may also transport divalent cations.
Length=356

 Score = 279 bits (717),  Expect = 6e-90, Method: Composition-based stats.
 Identities = 158/381 (41%), Positives = 210/381 (55%), Gaps = 33/381 (9%)

Query  145  ATDVAAGAEFRYALLFIVLLSNLFAIFLQSLCIKLGSVTGLNLAENCREHLPKWLVYILY  204
            ATD+ AGA F Y+LL+++LLSNL AI LQ L  +LG VTG  LAE  RE  P+ + ++L+
Sbjct  2    ATDIQAGARFGYSLLWVLLLSNLMAILLQELSARLGLVTGKGLAELIRERFPRKVSWLLW  61

Query  205  FLSEAAIVATDIAEVVGSAIALNLLLKIPLVAGCAITLADVLFLLIFYRPNGSIWGLRLF  264
             L+E AI+ATD+AEV+G AIALNLL  IPL  G  IT   VL LL          G R  
Sbjct  62   ILAELAIIATDLAEVIGGAIALNLLFGIPLWIGVLITAVLVLLLLFQKG------GYRKL  115

Query  265  EYFVMALVLGVVVCFCIQLSLIREQSVRDVFRGYLPSSAIVQSKGLYQSCGILGATVMPH  324
            E  ++ LVL + + F  +L L++      V  G +  S    S  L  + GILGATVMPH
Sbjct  116  EKVIIGLVLVIALSFIAELFLVK-PDWGAVAAGLVVPS-FPGSGSLLLAVGILGATVMPH  173

Query  325  SIFLGSGVVQPRLKEFDVTKGYVDPAVCLGSTDGKVEYRPSIHAIRGCMKYSIIELSLSL  384
            ++FL S +VQ R    D                          A+R    YS I+  ++L
Sbjct  174  NLFLHSSLVQERGWTIDRD--------------------EEDEALR----YSRIDTIIAL  209

Query  385  FTFALFVNSSILIVAGASLYGSSGADNADLWGIHDLLSSSIAPVAGLIFALALLLSGISA  444
               A  VN++ILIVA A+ +GS G D A L      L   +   A ++FAL LL +G+S+
Sbjct  210  I-VAGLVNAAILIVAAAAFHGSGGIDVATLADAAAALEPLLGKAAAVLFALGLLAAGLSS  268

Query  445  GIVCTMAGQMVSEGMLKWTIRPWLRRLITRSISIIPSIIIAAAVGKDGLDKTLTASQVVL  504
             I  T+AGQ V EG L W I  WLRRLITR+I+  P++ +    G  G+ + L  SQVVL
Sbjct  269  TITGTLAGQYVMEGFLGWRIPLWLRRLITRAIAFYPALAVILLGGAPGVVQLLVLSQVVL  328

Query  505  SVILPFVTAPLIYFTCRNRYM  525
            S+ LPF   PL+  T   + M
Sbjct  329  SLQLPFALIPLLLLTSDRKLM  349



Lambda      K        H        a         alpha
   0.324    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 727786436


Query= TCONS_00035306

Length=631
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein. ...  244     1e-75


>CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein.  This family 
includes a conserved region from a group of yeast proteins 
that associate with the SIT4 phosphatase. This association 
is required for SIT4's role in G1 cyclin transcription and 
for bud formation. This family also includes homologous regions 
from other eukaryotes.
Length=383

 Score = 244 bits (626),  Expect = 1e-75, Method: Composition-based stats.
 Identities = 85/141 (60%), Positives = 106/141 (75%), Gaps = 0/141 (0%)

Query  383  GDYLKIMFVKNQVVPTILDFFFRFPWNNFLHNVVYDVVQQVFNGPMERGYNRCLAIDLFE  442
            G+ LKI  V   ++PTILD FF++PWNNFLHNVV D++QQ+ NGPM+  YN  L +DLF 
Sbjct  243  GEKLKIKLVDLGIIPTILDLFFKYPWNNFLHNVVEDIIQQILNGPMDFSYNSFLVVDLFT  302

Query  443  TGRITQAIVAGQKRSDEAQRTQRIRLGYMGHLTLIAEEVVKFSERHPPELLSPTVMESVL  502
               +TQ I+ GQK SD  Q  +  RLGYMGHLTLIAEEVVKFSE++PPEL+SP ++E + 
Sbjct  303  DCNLTQRILEGQKESDRFQAEKGPRLGYMGHLTLIAEEVVKFSEKYPPELISPDILEILE  362

Query  503  NPEWIDYVEQTLSETRERDNA  523
            N EW +YVE+TL ETRER N 
Sbjct  363  NEEWEEYVEETLEETRERYNV  383


 Score = 167 bits (426),  Expect = 9e-47, Method: Composition-based stats.
 Identities = 64/135 (47%), Positives = 81/135 (60%), Gaps = 17/135 (13%)

Query  1    MLQG--GNPLTVGVGIVIEVIRKNNSDYDPETIG---GPDSPPTTYDPIYLGNLLRIFAK  55
            ML+G  G+ L  GVGI+IE+IRKNNSDYDP  +      + PP+  DPIYLG+LLR F+ 
Sbjct  127  MLKGKSGSALVNGVGIIIELIRKNNSDYDPVQLLYTTLEEHPPSDRDPIYLGHLLRAFSP  186

Query  56   HIPDFMALIRSSKHTISDNGKVRSVERGQLSSAWGAKIEPLGFDRFKTCELMAELLHCSN  115
            H+PDF  L+                    L +  G  IEPLGF+RFK  EL+AELLHCSN
Sbjct  187  HLPDFHQLLLDPPKDSP------------LQTTLGVLIEPLGFERFKIVELIAELLHCSN  234

Query  116  MGLLNEPGSDEYVRQ  130
            M LLNE   ++   +
Sbjct  235  MSLLNEKKGEKLKIK  249



Lambda      K        H        a         alpha
   0.310    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 793437020


Query= TCONS_00035305

Length=639
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein. ...  244     3e-75


>CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein.  This family 
includes a conserved region from a group of yeast proteins 
that associate with the SIT4 phosphatase. This association 
is required for SIT4's role in G1 cyclin transcription and 
for bud formation. This family also includes homologous regions 
from other eukaryotes.
Length=383

 Score = 244 bits (624),  Expect = 3e-75, Method: Composition-based stats.
 Identities = 85/141 (60%), Positives = 106/141 (75%), Gaps = 0/141 (0%)

Query  383  GDYLKIMFVKNQVVPTILDFFFRFPWNNFLHNVVYDVVQQVFNGPMERGYNRCLAIDLFE  442
            G+ LKI  V   ++PTILD FF++PWNNFLHNVV D++QQ+ NGPM+  YN  L +DLF 
Sbjct  243  GEKLKIKLVDLGIIPTILDLFFKYPWNNFLHNVVEDIIQQILNGPMDFSYNSFLVVDLFT  302

Query  443  TGRITQAIVAGQKRSDEAQRTQRIRLGYMGHLTLIAEEVVKFSERHPPELLSPTVMESVL  502
               +TQ I+ GQK SD  Q  +  RLGYMGHLTLIAEEVVKFSE++PPEL+SP ++E + 
Sbjct  303  DCNLTQRILEGQKESDRFQAEKGPRLGYMGHLTLIAEEVVKFSEKYPPELISPDILEILE  362

Query  503  NPEWIDYVEQTLSETRERDNA  523
            N EW +YVE+TL ETRER N 
Sbjct  363  NEEWEEYVEETLEETRERYNV  383


 Score = 167 bits (425),  Expect = 1e-46, Method: Composition-based stats.
 Identities = 64/135 (47%), Positives = 81/135 (60%), Gaps = 17/135 (13%)

Query  1    MLQG--GNPLTVGVGIVIEVIRKNNSDYDPETIG---GPDSPPTTYDPIYLGNLLRIFAK  55
            ML+G  G+ L  GVGI+IE+IRKNNSDYDP  +      + PP+  DPIYLG+LLR F+ 
Sbjct  127  MLKGKSGSALVNGVGIIIELIRKNNSDYDPVQLLYTTLEEHPPSDRDPIYLGHLLRAFSP  186

Query  56   HIPDFMALIRSSKHTISDNGKVRSVERGQLSSAWGAKIEPLGFDRFKTCELMAELLHCSN  115
            H+PDF  L+                    L +  G  IEPLGF+RFK  EL+AELLHCSN
Sbjct  187  HLPDFHQLLLDPPKDSP------------LQTTLGVLIEPLGFERFKIVELIAELLHCSN  234

Query  116  MGLLNEPGSDEYVRQ  130
            M LLNE   ++   +
Sbjct  235  MSLLNEKKGEKLKIK  249



Lambda      K        H        a         alpha
   0.310    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 805235340


Query= TCONS_00030975

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein. ...  168     7e-49


>CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein.  This family 
includes a conserved region from a group of yeast proteins 
that associate with the SIT4 phosphatase. This association 
is required for SIT4's role in G1 cyclin transcription and 
for bud formation. This family also includes homologous regions 
from other eukaryotes.
Length=383

 Score = 168 bits (427),  Expect = 7e-49, Method: Composition-based stats.
 Identities = 64/135 (47%), Positives = 81/135 (60%), Gaps = 17/135 (13%)

Query  1    MLQG--GNPLTVGVGIVIEVIRKNNSDYDPETIG---GPDSPPTTYDPIYLGNLLRIFAK  55
            ML+G  G+ L  GVGI+IE+IRKNNSDYDP  +      + PP+  DPIYLG+LLR F+ 
Sbjct  127  MLKGKSGSALVNGVGIIIELIRKNNSDYDPVQLLYTTLEEHPPSDRDPIYLGHLLRAFSP  186

Query  56   HIPDFMALIRSSKHTISDNGKVRSVERGQLSSAWGAKIEPLGFDRFKTCELMAELLHCSN  115
            H+PDF  L+                    L +  G  IEPLGF+RFK  EL+AELLHCSN
Sbjct  187  HLPDFHQLLLDPPKDSP------------LQTTLGVLIEPLGFERFKIVELIAELLHCSN  234

Query  116  MGLLNEPGSDEYVRQ  130
            M LLNE   ++   +
Sbjct  235  MSLLNEKKGEKLKIK  249



Lambda      K        H        a         alpha
   0.308    0.129    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00030976

Length=1155
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein. ...  367     2e-117


>CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein.  This family 
includes a conserved region from a group of yeast proteins 
that associate with the SIT4 phosphatase. This association 
is required for SIT4's role in G1 cyclin transcription and 
for bud formation. This family also includes homologous regions 
from other eukaryotes.
Length=383

 Score = 367 bits (944),  Expect = 2e-117, Method: Composition-based stats.
 Identities = 131/261 (50%), Positives = 167/261 (64%), Gaps = 17/261 (7%)

Query  173  NETLFDRKTSEMLEFFKSLEGIVPAILQHVDNPMVMDLLLKIISLEKAEGGQGIVDWLKT  232
            NE L DRKT +M+EF +  E  V   L+H+D P +MDLLLK+IS +K E   G+++WL  
Sbjct  1    NENLLDRKTDQMIEFIRKQENFVDKFLKHIDTPAIMDLLLKLISTDKPELPTGVIEWLNE  60

Query  233  QNLIPILLSFLTPEHPASVQTSAGDFLKAIITISANATQNDQSCIGPNSLTRQLVSAQCV  292
            QNLIP LL  L+P +   +Q++A DFLKAIITIS NA    QS IGPN LTR+LVS + V
Sbjct  61   QNLIPKLLDLLSPSYDEDIQSNASDFLKAIITISRNAPLQLQSSIGPNELTRELVSEESV  120

Query  293  ETLITAMLQG--GNPLTVGVGIVIEVIRKNNSDYDPETIG---GPDSPPTTYDPIYLGNL  347
            E L+  ML+G  G+ L  GVGI+IE+IRKNNSDYDP  +      + PP+  DPIYLG+L
Sbjct  121  EKLLDNMLKGKSGSALVNGVGIIIELIRKNNSDYDPVQLLYTTLEEHPPSDRDPIYLGHL  180

Query  348  LRIFAKHIPDFMALIRSSKHTISDNGKVRSVERGQLSSAWGAKIEPLGFDRFKTCELMAE  407
            LR F+ H+PDF  L+                    L +  G  IEPLGF+RFK  EL+AE
Sbjct  181  LRAFSPHLPDFHQLLLDPPKDSP------------LQTTLGVLIEPLGFERFKIVELIAE  228

Query  408  LLHCSNMGLLNEPGSDEYVRQ  428
            LLHCSNM LLNE   ++   +
Sbjct  229  LLHCSNMSLLNEKKGEKLKIK  249


 Score = 243 bits (622),  Expect = 5e-72, Method: Composition-based stats.
 Identities = 85/141 (60%), Positives = 106/141 (75%), Gaps = 0/141 (0%)

Query  681  GDYLKIMFVKNQVVPTILDFFFRFPWNNFLHNVVYDVVQQVFNGPMERGYNRCLAIDLFE  740
            G+ LKI  V   ++PTILD FF++PWNNFLHNVV D++QQ+ NGPM+  YN  L +DLF 
Sbjct  243  GEKLKIKLVDLGIIPTILDLFFKYPWNNFLHNVVEDIIQQILNGPMDFSYNSFLVVDLFT  302

Query  741  TGRITQAIVAGQKRSDEAQRTQRIRLGYMGHLTLIAEEVVKFSERHPPELLSPTVMESVL  800
               +TQ I+ GQK SD  Q  +  RLGYMGHLTLIAEEVVKFSE++PPEL+SP ++E + 
Sbjct  303  DCNLTQRILEGQKESDRFQAEKGPRLGYMGHLTLIAEEVVKFSEKYPPELISPDILEILE  362

Query  801  NPEWIDYVEQTLSETRERDNA  821
            N EW +YVE+TL ETRER N 
Sbjct  363  NEEWEEYVEETLEETRERYNV  383



Lambda      K        H        a         alpha
   0.311    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1477219804


Query= TCONS_00030978

Length=937
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein. ...  363     8e-118


>CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein.  This family 
includes a conserved region from a group of yeast proteins 
that associate with the SIT4 phosphatase. This association 
is required for SIT4's role in G1 cyclin transcription and 
for bud formation. This family also includes homologous regions 
from other eukaryotes.
Length=383

 Score = 363 bits (933),  Expect = 8e-118, Method: Composition-based stats.
 Identities = 131/261 (50%), Positives = 167/261 (64%), Gaps = 17/261 (7%)

Query  173  NETLFDRKTSEMLEFFKSLEGIVPAILQHVDNPMVMDLLLKIISLEKAEGGQGIVDWLKT  232
            NE L DRKT +M+EF +  E  V   L+H+D P +MDLLLK+IS +K E   G+++WL  
Sbjct  1    NENLLDRKTDQMIEFIRKQENFVDKFLKHIDTPAIMDLLLKLISTDKPELPTGVIEWLNE  60

Query  233  QNLIPILLSFLTPEHPASVQTSAGDFLKAIITISANATQNDQSCIGPNSLTRQLVSAQCV  292
            QNLIP LL  L+P +   +Q++A DFLKAIITIS NA    QS IGPN LTR+LVS + V
Sbjct  61   QNLIPKLLDLLSPSYDEDIQSNASDFLKAIITISRNAPLQLQSSIGPNELTRELVSEESV  120

Query  293  ETLITAMLQG--GNPLTVGVGIVIEVIRKNNSDYDPETIG---GPDSPPTTYDPIYLGNL  347
            E L+  ML+G  G+ L  GVGI+IE+IRKNNSDYDP  +      + PP+  DPIYLG+L
Sbjct  121  EKLLDNMLKGKSGSALVNGVGIIIELIRKNNSDYDPVQLLYTTLEEHPPSDRDPIYLGHL  180

Query  348  LRIFAKHIPDFMALIRSSKHTISDNGKVRSVERGQLSSAWGAKIEPLGFDRFKTCELMAE  407
            LR F+ H+PDF  L+                    L +  G  IEPLGF+RFK  EL+AE
Sbjct  181  LRAFSPHLPDFHQLLLDPPKDSP------------LQTTLGVLIEPLGFERFKIVELIAE  228

Query  408  LLHCSNMGLLNEPGSDEYVRQ  428
            LLHCSNM LLNE   ++   +
Sbjct  229  LLHCSNMSLLNEKKGEKLKIK  249


 Score = 240 bits (616),  Expect = 6e-72, Method: Composition-based stats.
 Identities = 85/141 (60%), Positives = 106/141 (75%), Gaps = 0/141 (0%)

Query  681  GDYLKIMFVKNQVVPTILDFFFRFPWNNFLHNVVYDVVQQVFNGPMERGYNRCLAIDLFE  740
            G+ LKI  V   ++PTILD FF++PWNNFLHNVV D++QQ+ NGPM+  YN  L +DLF 
Sbjct  243  GEKLKIKLVDLGIIPTILDLFFKYPWNNFLHNVVEDIIQQILNGPMDFSYNSFLVVDLFT  302

Query  741  TGRITQAIVAGQKRSDEAQRTQRIRLGYMGHLTLIAEEVVKFSERHPPELLSPTVMESVL  800
               +TQ I+ GQK SD  Q  +  RLGYMGHLTLIAEEVVKFSE++PPEL+SP ++E + 
Sbjct  303  DCNLTQRILEGQKESDRFQAEKGPRLGYMGHLTLIAEEVVKFSEKYPPELISPDILEILE  362

Query  801  NPEWIDYVEQTLSETRERDNA  821
            N EW +YVE+TL ETRER N 
Sbjct  363  NEEWEEYVEETLEETRERYNV  383



Lambda      K        H        a         alpha
   0.312    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1208702788


Query= TCONS_00030977

Length=937
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein. ...  363     8e-118


>CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein.  This family 
includes a conserved region from a group of yeast proteins 
that associate with the SIT4 phosphatase. This association 
is required for SIT4's role in G1 cyclin transcription and 
for bud formation. This family also includes homologous regions 
from other eukaryotes.
Length=383

 Score = 363 bits (933),  Expect = 8e-118, Method: Composition-based stats.
 Identities = 131/261 (50%), Positives = 167/261 (64%), Gaps = 17/261 (7%)

Query  173  NETLFDRKTSEMLEFFKSLEGIVPAILQHVDNPMVMDLLLKIISLEKAEGGQGIVDWLKT  232
            NE L DRKT +M+EF +  E  V   L+H+D P +MDLLLK+IS +K E   G+++WL  
Sbjct  1    NENLLDRKTDQMIEFIRKQENFVDKFLKHIDTPAIMDLLLKLISTDKPELPTGVIEWLNE  60

Query  233  QNLIPILLSFLTPEHPASVQTSAGDFLKAIITISANATQNDQSCIGPNSLTRQLVSAQCV  292
            QNLIP LL  L+P +   +Q++A DFLKAIITIS NA    QS IGPN LTR+LVS + V
Sbjct  61   QNLIPKLLDLLSPSYDEDIQSNASDFLKAIITISRNAPLQLQSSIGPNELTRELVSEESV  120

Query  293  ETLITAMLQG--GNPLTVGVGIVIEVIRKNNSDYDPETIG---GPDSPPTTYDPIYLGNL  347
            E L+  ML+G  G+ L  GVGI+IE+IRKNNSDYDP  +      + PP+  DPIYLG+L
Sbjct  121  EKLLDNMLKGKSGSALVNGVGIIIELIRKNNSDYDPVQLLYTTLEEHPPSDRDPIYLGHL  180

Query  348  LRIFAKHIPDFMALIRSSKHTISDNGKVRSVERGQLSSAWGAKIEPLGFDRFKTCELMAE  407
            LR F+ H+PDF  L+                    L +  G  IEPLGF+RFK  EL+AE
Sbjct  181  LRAFSPHLPDFHQLLLDPPKDSP------------LQTTLGVLIEPLGFERFKIVELIAE  228

Query  408  LLHCSNMGLLNEPGSDEYVRQ  428
            LLHCSNM LLNE   ++   +
Sbjct  229  LLHCSNMSLLNEKKGEKLKIK  249


 Score = 240 bits (616),  Expect = 6e-72, Method: Composition-based stats.
 Identities = 85/141 (60%), Positives = 106/141 (75%), Gaps = 0/141 (0%)

Query  681  GDYLKIMFVKNQVVPTILDFFFRFPWNNFLHNVVYDVVQQVFNGPMERGYNRCLAIDLFE  740
            G+ LKI  V   ++PTILD FF++PWNNFLHNVV D++QQ+ NGPM+  YN  L +DLF 
Sbjct  243  GEKLKIKLVDLGIIPTILDLFFKYPWNNFLHNVVEDIIQQILNGPMDFSYNSFLVVDLFT  302

Query  741  TGRITQAIVAGQKRSDEAQRTQRIRLGYMGHLTLIAEEVVKFSERHPPELLSPTVMESVL  800
               +TQ I+ GQK SD  Q  +  RLGYMGHLTLIAEEVVKFSE++PPEL+SP ++E + 
Sbjct  303  DCNLTQRILEGQKESDRFQAEKGPRLGYMGHLTLIAEEVVKFSEKYPPELISPDILEILE  362

Query  801  NPEWIDYVEQTLSETRERDNA  821
            N EW +YVE+TL ETRER N 
Sbjct  363  NEEWEEYVEETLEETRERYNV  383



Lambda      K        H        a         alpha
   0.312    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1208702788


Query= TCONS_00035307

Length=700
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein. ...  362     3e-120


>CDD:398279 pfam04499, SAPS, SIT4 phosphatase-associated protein.  This family 
includes a conserved region from a group of yeast proteins 
that associate with the SIT4 phosphatase. This association 
is required for SIT4's role in G1 cyclin transcription and 
for bud formation. This family also includes homologous regions 
from other eukaryotes.
Length=383

 Score = 362 bits (932),  Expect = 3e-120, Method: Composition-based stats.
 Identities = 131/261 (50%), Positives = 167/261 (64%), Gaps = 17/261 (7%)

Query  173  NETLFDRKTSEMLEFFKSLEGIVPAILQHVDNPMVMDLLLKIISLEKAEGGQGIVDWLKT  232
            NE L DRKT +M+EF +  E  V   L+H+D P +MDLLLK+IS +K E   G+++WL  
Sbjct  1    NENLLDRKTDQMIEFIRKQENFVDKFLKHIDTPAIMDLLLKLISTDKPELPTGVIEWLNE  60

Query  233  QNLIPILLSFLTPEHPASVQTSAGDFLKAIITISANATQNDQSCIGPNSLTRQLVSAQCV  292
            QNLIP LL  L+P +   +Q++A DFLKAIITIS NA    QS IGPN LTR+LVS + V
Sbjct  61   QNLIPKLLDLLSPSYDEDIQSNASDFLKAIITISRNAPLQLQSSIGPNELTRELVSEESV  120

Query  293  ETLITAMLQG--GNPLTVGVGIVIEVIRKNNSDYDPETIG---GPDSPPTTYDPIYLGNL  347
            E L+  ML+G  G+ L  GVGI+IE+IRKNNSDYDP  +      + PP+  DPIYLG+L
Sbjct  121  EKLLDNMLKGKSGSALVNGVGIIIELIRKNNSDYDPVQLLYTTLEEHPPSDRDPIYLGHL  180

Query  348  LRIFAKHIPDFMALIRSSKHTISDNGKVRSVERGQLSSAWGAKIEPLGFDRFKTCELMAE  407
            LR F+ H+PDF  L+                    L +  G  IEPLGF+RFK  EL+AE
Sbjct  181  LRAFSPHLPDFHQLLLDPPKDSP------------LQTTLGVLIEPLGFERFKIVELIAE  228

Query  408  LLHCSNMGLLNEPGSDEYVRQ  428
            LLHCSNM LLNE   ++   +
Sbjct  229  LLHCSNMSLLNEKKGEKLKIK  249



Lambda      K        H        a         alpha
   0.311    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 895197530


Query= TCONS_00030979

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460237 pfam01512, Complex1_51K, Respiratory-chain NADH dehydr...  188     2e-58
CDD:463160 pfam10589, NADH_4Fe-4S, NADH-ubiquinone oxidoreductase...  137     3e-40


>CDD:460237 pfam01512, Complex1_51K, Respiratory-chain NADH dehydrogenase 
51 Kd subunit.  
Length=150

 Score = 188 bits (479),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 74/173 (43%), Positives = 97/173 (56%), Gaps = 26/173 (15%)

Query  92   IKASGLRGRGGAGFPSGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPH  151
            +K +G+ GRGGAGFP+ +K S           + +YL+VN  E EPG  KDR +MR+ PH
Sbjct  1    VKEAGIVGRGGAGFPTHVKLSPP------PKKKIKYLIVNGAECEPGLTKDRRLMRERPH  54

Query  152  KLIEGCLVVGRAMNATAAYIYIRGEFYHEATVLQRAINEAYQAGLIGKNACGTGYDFDVY  211
            ++IEG  +   A+ A    I IR E       L++AI EA  AG            FD+ 
Sbjct  55   EIIEGIKIAAYALGAKRGVIGIRDEKPEAIAALEKAIAEARAAG------------FDIE  102

Query  212  IHRGMGAYICGEETSLIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVA  264
            +HRG GAY CGEE +LI S+ G+ G PR KP  PA VG+      V NVET+A
Sbjct  103  VHRGAGAYPCGEEKALIYSLTGR-GVPRGKP--PADVGV-----VVNNVETLA  147


>CDD:463160 pfam10589, NADH_4Fe-4S, NADH-ubiquinone oxidoreductase-F iron-sulfur 
binding region.  
Length=85

 Score = 137 bits (349),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 38/85 (45%), Positives = 59/85 (69%), Gaps = 0/85 (0%)

Query  380  RAISRLSKFYKHESCGQCTPCREGSKWTAQMMERMEKGQAREREIDMLQELTKQVEGHTI  439
                R  +FY HESCG+CTPCREG+KW A+++ER+  G+  E ++D+L+EL + ++G ++
Sbjct  1    DVARRFLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIKGRSL  60

Query  440  CALGEAFAWPIQGLIRHFRPELEAR  464
            C LG+  A P+   +R+FR E EA 
Sbjct  61   CGLGDGAANPVLSALRYFRDEFEAH  85



Lambda      K        H        a         alpha
   0.319    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00030980

Length=704


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 901096690


Query= TCONS_00035309

Length=412


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0725    0.140     1.90     42.6     43.6 

Effective search space used: 501729466


Query= TCONS_00030982

Length=412


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 501729466


Query= TCONS_00030983

Length=456


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00030984

Length=456


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00035311

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460237 pfam01512, Complex1_51K, Respiratory-chain NADH dehydr...  184     5e-57
CDD:463160 pfam10589, NADH_4Fe-4S, NADH-ubiquinone oxidoreductase...  137     3e-40


>CDD:460237 pfam01512, Complex1_51K, Respiratory-chain NADH dehydrogenase 
51 Kd subunit.  
Length=150

 Score = 184 bits (470),  Expect = 5e-57, Method: Composition-based stats.
 Identities = 73/173 (42%), Positives = 96/173 (55%), Gaps = 26/173 (15%)

Query  92   IKASGLRGRGGAGFPSGLKYVFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPH  151
            +K +G+ GRGGAGFP+ +K             + +YL+VN  E EPG  KDR +MR+ PH
Sbjct  1    VKEAGIVGRGGAGFPTHVKLSPP------PKKKIKYLIVNGAECEPGLTKDRRLMRERPH  54

Query  152  KLIEGCLVVGRAMNATAAYIYIRGEFYHEATVLQRAINEAYQAGLIGKNACGTGYDFDVY  211
            ++IEG  +   A+ A    I IR E       L++AI EA  AG            FD+ 
Sbjct  55   EIIEGIKIAAYALGAKRGVIGIRDEKPEAIAALEKAIAEARAAG------------FDIE  102

Query  212  IHRGMGAYICGEETSLIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVA  264
            +HRG GAY CGEE +LI S+ G+ G PR KP  PA VG+      V NVET+A
Sbjct  103  VHRGAGAYPCGEEKALIYSLTGR-GVPRGKP--PADVGV-----VVNNVETLA  147


>CDD:463160 pfam10589, NADH_4Fe-4S, NADH-ubiquinone oxidoreductase-F iron-sulfur 
binding region.  
Length=85

 Score = 137 bits (349),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 38/85 (45%), Positives = 59/85 (69%), Gaps = 0/85 (0%)

Query  380  RAISRLSKFYKHESCGQCTPCREGSKWTAQMMERMEKGQAREREIDMLQELTKQVEGHTI  439
                R  +FY HESCG+CTPCREG+KW A+++ER+  G+  E ++D+L+EL + ++G ++
Sbjct  1    DVARRFLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIKGRSL  60

Query  440  CALGEAFAWPIQGLIRHFRPELEAR  464
            C LG+  A P+   +R+FR E EA 
Sbjct  61   CGLGDGAANPVLSALRYFRDEFEAH  85



Lambda      K        H        a         alpha
   0.319    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00030985

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460237 pfam01512, Complex1_51K, Respiratory-chain NADH dehydr...  150     4e-45
CDD:463160 pfam10589, NADH_4Fe-4S, NADH-ubiquinone oxidoreductase...  136     1e-40


>CDD:460237 pfam01512, Complex1_51K, Respiratory-chain NADH dehydrogenase 
51 Kd subunit.  
Length=150

 Score = 150 bits (382),  Expect = 4e-45, Method: Composition-based stats.
 Identities = 62/144 (43%), Positives = 80/144 (56%), Gaps = 20/144 (14%)

Query  8    KDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVVGRAMNATAAYIYIRGEFYHE  67
               + +YL+VN  E EPG  KDR +MR+ PH++IEG  +   A+ A    I IR E    
Sbjct  24   PKKKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIRDEKPEA  83

Query  68   ATVLQRAINEAYQAGLIGKNACGTGYDFDVYIHRGMGAYICGEETSLIESIEGKAGKPRL  127
               L++AI EA  AG            FD+ +HRG GAY CGEE +LI S+ G+ G PR 
Sbjct  84   IAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGR-GVPRG  130

Query  128  KPPFPAAVGLFGCPSTVTNVETVA  151
            KP  PA VG+      V NVET+A
Sbjct  131  KP--PADVGV-----VVNNVETLA  147


>CDD:463160 pfam10589, NADH_4Fe-4S, NADH-ubiquinone oxidoreductase-F iron-sulfur 
binding region.  
Length=85

 Score = 136 bits (345),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 38/85 (45%), Positives = 59/85 (69%), Gaps = 0/85 (0%)

Query  267  RAISRLSKFYKHESCGQCTPCREGSKWTAQMMERMEKGQAREREIDMLQELTKQVEGHTI  326
                R  +FY HESCG+CTPCREG+KW A+++ER+  G+  E ++D+L+EL + ++G ++
Sbjct  1    DVARRFLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIKGRSL  60

Query  327  CALGEAFAWPIQGLIRHFRPELEAR  351
            C LG+  A P+   +R+FR E EA 
Sbjct  61   CGLGDGAANPVLSALRYFRDEFEAH  85



Lambda      K        H        a         alpha
   0.319    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00035312

Length=153
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460237 pfam01512, Complex1_51K, Respiratory-chain NADH dehydr...  89.5    4e-24


>CDD:460237 pfam01512, Complex1_51K, Respiratory-chain NADH dehydrogenase 
51 Kd subunit.  
Length=150

 Score = 89.5 bits (223),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 27/62 (44%), Positives = 40/62 (65%), Gaps = 6/62 (10%)

Query  92   IKASGLRGRGGAGFPSGLKYVSLNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPH  151
            +K +G+ GRGGAGFP+ +K   L+        + +YL+VN  E EPG  KDR +MR+ PH
Sbjct  1    VKEAGIVGRGGAGFPTHVK---LSPP---PKKKIKYLIVNGAECEPGLTKDRRLMRERPH  54

Query  152  KL  153
            ++
Sbjct  55   EI  56



Lambda      K        H        a         alpha
   0.318    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00030987

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460237 pfam01512, Complex1_51K, Respiratory-chain NADH dehydr...  188     2e-58
CDD:463160 pfam10589, NADH_4Fe-4S, NADH-ubiquinone oxidoreductase...  137     3e-40


>CDD:460237 pfam01512, Complex1_51K, Respiratory-chain NADH dehydrogenase 
51 Kd subunit.  
Length=150

 Score = 188 bits (479),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 74/173 (43%), Positives = 97/173 (56%), Gaps = 26/173 (15%)

Query  92   IKASGLRGRGGAGFPSGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPH  151
            +K +G+ GRGGAGFP+ +K S           + +YL+VN  E EPG  KDR +MR+ PH
Sbjct  1    VKEAGIVGRGGAGFPTHVKLSPP------PKKKIKYLIVNGAECEPGLTKDRRLMRERPH  54

Query  152  KLIEGCLVVGRAMNATAAYIYIRGEFYHEATVLQRAINEAYQAGLIGKNACGTGYDFDVY  211
            ++IEG  +   A+ A    I IR E       L++AI EA  AG            FD+ 
Sbjct  55   EIIEGIKIAAYALGAKRGVIGIRDEKPEAIAALEKAIAEARAAG------------FDIE  102

Query  212  IHRGMGAYICGEETSLIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVA  264
            +HRG GAY CGEE +LI S+ G+ G PR KP  PA VG+      V NVET+A
Sbjct  103  VHRGAGAYPCGEEKALIYSLTGR-GVPRGKP--PADVGV-----VVNNVETLA  147


>CDD:463160 pfam10589, NADH_4Fe-4S, NADH-ubiquinone oxidoreductase-F iron-sulfur 
binding region.  
Length=85

 Score = 137 bits (349),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 38/85 (45%), Positives = 59/85 (69%), Gaps = 0/85 (0%)

Query  380  RAISRLSKFYKHESCGQCTPCREGSKWTAQMMERMEKGQAREREIDMLQELTKQVEGHTI  439
                R  +FY HESCG+CTPCREG+KW A+++ER+  G+  E ++D+L+EL + ++G ++
Sbjct  1    DVARRFLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIKGRSL  60

Query  440  CALGEAFAWPIQGLIRHFRPELEAR  464
            C LG+  A P+   +R+FR E EA 
Sbjct  61   CGLGDGAANPVLSALRYFRDEFEAH  85



Lambda      K        H        a         alpha
   0.319    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00035313

Length=144
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460237 pfam01512, Complex1_51K, Respiratory-chain NADH dehydr...  76.8    3e-19


>CDD:460237 pfam01512, Complex1_51K, Respiratory-chain NADH dehydrogenase 
51 Kd subunit.  
Length=150

 Score = 76.8 bits (190),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 30/52 (58%), Gaps = 6/52 (12%)

Query  92   IKASGLRGRGGAGFPSGLKYVFMNFKDWDKDPRPRYLVVNADEGEPGTCKDR  143
            +K +G+ GRGGAGFP+ +K             + +YL+VN  E EPG  KDR
Sbjct  1    VKEAGIVGRGGAGFPTHVKLSPP------PKKKIKYLIVNGAECEPGLTKDR  46



Lambda      K        H        a         alpha
   0.318    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00030988

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460237 pfam01512, Complex1_51K, Respiratory-chain NADH dehydr...  188     2e-58
CDD:463160 pfam10589, NADH_4Fe-4S, NADH-ubiquinone oxidoreductase...  138     3e-40


>CDD:460237 pfam01512, Complex1_51K, Respiratory-chain NADH dehydrogenase 
51 Kd subunit.  
Length=150

 Score = 188 bits (479),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 74/173 (43%), Positives = 97/173 (56%), Gaps = 26/173 (15%)

Query  92   IKASGLRGRGGAGFPSGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPH  151
            +K +G+ GRGGAGFP+ +K S           + +YL+VN  E EPG  KDR +MR+ PH
Sbjct  1    VKEAGIVGRGGAGFPTHVKLSPP------PKKKIKYLIVNGAECEPGLTKDRRLMRERPH  54

Query  152  KLIEGCLVVGRAMNATAAYIYIRGEFYHEATVLQRAINEAYQAGLIGKNACGTGYDFDVY  211
            ++IEG  +   A+ A    I IR E       L++AI EA  AG            FD+ 
Sbjct  55   EIIEGIKIAAYALGAKRGVIGIRDEKPEAIAALEKAIAEARAAG------------FDIE  102

Query  212  IHRGMGAYICGEETSLIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVA  264
            +HRG GAY CGEE +LI S+ G+ G PR KP  PA VG+      V NVET+A
Sbjct  103  VHRGAGAYPCGEEKALIYSLTGR-GVPRGKP--PADVGV-----VVNNVETLA  147


>CDD:463160 pfam10589, NADH_4Fe-4S, NADH-ubiquinone oxidoreductase-F iron-sulfur 
binding region.  
Length=85

 Score = 138 bits (350),  Expect = 3e-40, Method: Composition-based stats.
 Identities = 38/85 (45%), Positives = 59/85 (69%), Gaps = 0/85 (0%)

Query  380  RAISRLSKFYKHESCGQCTPCREGSKWTAQMMERMEKGQAREREIDMLQELTKQVEGHTI  439
                R  +FY HESCG+CTPCREG+KW A+++ER+  G+  E ++D+L+EL + ++G ++
Sbjct  1    DVARRFLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIKGRSL  60

Query  440  CALGEAFAWPIQGLIRHFRPELEAR  464
            C LG+  A P+   +R+FR E EA 
Sbjct  61   CGLGDGAANPVLSALRYFRDEFEAH  85



Lambda      K        H        a         alpha
   0.319    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00035315

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00035316

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00035317

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00030989

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00030991

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00035318

Length=1082
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425499 pfam00168, C2, C2 domain                                   80.1    2e-18


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 80.1 bits (198),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 8/102 (8%)

Query  516  VRIHRAIGLSKQDKRGTHGGGSDPYINLSFSKYGKPMYCTRVITDDLNPIWEETAALLVT  575
            V +  A  L  +D  GT    SDPY+ +     GK    T+V+ + LNP+W ET    V 
Sbjct  5    VTVIEAKNLPPKDGNGT----SDPYVKVYLLD-GKQKKKTKVVKNTLNPVWNETFTFSVP  59

Query  576  PELIKVDENLSVELWDSDRNTADDIVGKIELPIREMLAHPGR  617
                  +  L +E++D DR   DD +G++ +P+ E+ +  G 
Sbjct  60   DPE---NAVLEIEVYDYDRFGRDDFIGEVRIPLSELDSGEGL  98



Lambda      K        H        a         alpha
   0.316    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1375294430


Query= TCONS_00030992

Length=1223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425499 pfam00168, C2, C2 domain                                   80.4    1e-18


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 80.4 bits (199),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 8/102 (8%)

Query  497  VRIHRAIGLSKQDKRGTHGGGSDPYINLSFSKYGKPMYCTRVITDDLNPIWEETAALLVT  556
            V +  A  L  +D  GT    SDPY+ +     GK    T+V+ + LNP+W ET    V 
Sbjct  5    VTVIEAKNLPPKDGNGT----SDPYVKVYLLD-GKQKKKTKVVKNTLNPVWNETFTFSVP  59

Query  557  PELIKVDENLSVELWDSDRNTADDIVGKIELPIREMLAHPGR  598
                  +  L +E++D DR   DD +G++ +P+ E+ +  G 
Sbjct  60   DPE---NAVLEIEVYDYDRFGRDDFIGEVRIPLSELDSGEGL  98



Lambda      K        H        a         alpha
   0.315    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1572163988


Query= TCONS_00035320

Length=695
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425499 pfam00168, C2, C2 domain                                   80.8    5e-19


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 80.8 bits (200),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 8/102 (8%)

Query  402  VRIHRAIGLSKQDKRGTHGGGSDPYINLSFSKYGKPMYCTRVITDDLNPIWEETAALLVT  461
            V +  A  L  +D  GT    SDPY+ +     GK    T+V+ + LNP+W ET    V 
Sbjct  5    VTVIEAKNLPPKDGNGT----SDPYVKVYLLD-GKQKKKTKVVKNTLNPVWNETFTFSVP  59

Query  462  PELIKVDENLSVELWDSDRNTADDIVGKIELPIREMLAHPGR  503
                  +  L +E++D DR   DD +G++ +P+ E+ +  G 
Sbjct  60   DPE---NAVLEIEVYDYDRFGRDDFIGEVRIPLSELDSGEGL  98



Lambda      K        H        a         alpha
   0.317    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 887823580


Query= TCONS_00035319

Length=790
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425499 pfam00168, C2, C2 domain                                   80.8    6e-19


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 80.8 bits (200),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 8/102 (8%)

Query  497  VRIHRAIGLSKQDKRGTHGGGSDPYINLSFSKYGKPMYCTRVITDDLNPIWEETAALLVT  556
            V +  A  L  +D  GT    SDPY+ +     GK    T+V+ + LNP+W ET    V 
Sbjct  5    VTVIEAKNLPPKDGNGT----SDPYVKVYLLD-GKQKKKTKVVKNTLNPVWNETFTFSVP  59

Query  557  PELIKVDENLSVELWDSDRNTADDIVGKIELPIREMLAHPGR  598
                  +  L +E++D DR   DD +G++ +P+ E+ +  G 
Sbjct  60   DPE---NAVLEIEVYDYDRFGRDDFIGEVRIPLSELDSGEGL  98



Lambda      K        H        a         alpha
   0.316    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1012785792


Query= TCONS_00035321

Length=695
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425499 pfam00168, C2, C2 domain                                   80.8    5e-19


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 80.8 bits (200),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 8/102 (8%)

Query  402  VRIHRAIGLSKQDKRGTHGGGSDPYINLSFSKYGKPMYCTRVITDDLNPIWEETAALLVT  461
            V +  A  L  +D  GT    SDPY+ +     GK    T+V+ + LNP+W ET    V 
Sbjct  5    VTVIEAKNLPPKDGNGT----SDPYVKVYLLD-GKQKKKTKVVKNTLNPVWNETFTFSVP  59

Query  462  PELIKVDENLSVELWDSDRNTADDIVGKIELPIREMLAHPGR  503
                  +  L +E++D DR   DD +G++ +P+ E+ +  G 
Sbjct  60   DPE---NAVLEIEVYDYDRFGRDDFIGEVRIPLSELDSGEGL  98



Lambda      K        H        a         alpha
   0.317    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 887823580


Query= TCONS_00030993

Length=1242
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425499 pfam00168, C2, C2 domain                                   80.4    1e-18


>CDD:425499 pfam00168, C2, C2 domain.  
Length=104

 Score = 80.4 bits (199),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 8/102 (8%)

Query  516  VRIHRAIGLSKQDKRGTHGGGSDPYINLSFSKYGKPMYCTRVITDDLNPIWEETAALLVT  575
            V +  A  L  +D  GT    SDPY+ +     GK    T+V+ + LNP+W ET    V 
Sbjct  5    VTVIEAKNLPPKDGNGT----SDPYVKVYLLD-GKQKKKTKVVKNTLNPVWNETFTFSVP  59

Query  576  PELIKVDENLSVELWDSDRNTADDIVGKIELPIREMLAHPGR  617
                  +  L +E++D DR   DD +G++ +P+ E+ +  G 
Sbjct  60   DPE---NAVLEIEVYDYDRFGRDDFIGEVRIPLSELDSGEGL  98



Lambda      K        H        a         alpha
   0.315    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1598692510


Query= TCONS_00030995

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0732    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00030997

Length=478


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00030998

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425885 pfam00817, IMS, impB/mucB/samB family. These proteins ...  128     2e-35


>CDD:425885 pfam00817, IMS, impB/mucB/samB family.  These proteins are involved 
in UV protection.
Length=148

 Score = 128 bits (325),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 55/205 (27%), Positives = 86/205 (42%), Gaps = 61/205 (30%)

Query  16   DYDCFYASVFEAEQPVLKSLPLAVQQ---KQIVVTCNYEARRRGLRKLQLIKEAKQICPD  72
            D D F+ASV     P LK  P+AV     + IV   +YEAR+ G+R    + EAK++CP+
Sbjct  2    DMDAFFASVELLRDPELKGKPVAVGGGNGRGIVAAASYEARKYGVRSGMPVFEAKKLCPN  61

Query  73   VVIVLGEDLTRFRNASKELYLFLQDFVWGKRVEKLGFDEVFLDVSDMVTYNVEMLNRNDL  132
             +IV+  DL  +R AS++++  L+ F    +VE+   DE FLD++ +             
Sbjct  62   -LIVVPPDLELYRRASRKIFEILRRFST-PKVEQASIDEAFLDLTGLE------------  107

Query  133  KNSFFHLDRRDPTVGFTYDATDFHGHAYQAVPDVATDAASEWLRTRLLVASHLAAYLRNQ  192
                                                                LA  LR +
Sbjct  108  --------------------------------------------KLFGAEEALAKRLRRE  123

Query  193  LEYQKGYTATVGISTSKLLAKLVGN  217
            +  + G T ++GI+ +KLLAKL  +
Sbjct  124  IAEETGLTCSIGIAPNKLLAKLASD  148



Lambda      K        H        a         alpha
   0.319    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 753191712


Query= TCONS_00035322

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425885 pfam00817, IMS, impB/mucB/samB family. These proteins ...  128     2e-35


>CDD:425885 pfam00817, IMS, impB/mucB/samB family.  These proteins are involved 
in UV protection.
Length=148

 Score = 128 bits (325),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 55/205 (27%), Positives = 86/205 (42%), Gaps = 61/205 (30%)

Query  16   DYDCFYASVFEAEQPVLKSLPLAVQQ---KQIVVTCNYEARRRGLRKLQLIKEAKQICPD  72
            D D F+ASV     P LK  P+AV     + IV   +YEAR+ G+R    + EAK++CP+
Sbjct  2    DMDAFFASVELLRDPELKGKPVAVGGGNGRGIVAAASYEARKYGVRSGMPVFEAKKLCPN  61

Query  73   VVIVLGEDLTRFRNASKELYLFLQDFVWGKRVEKLGFDEVFLDVSDMVTYNVEMLNRNDL  132
             +IV+  DL  +R AS++++  L+ F    +VE+   DE FLD++ +             
Sbjct  62   -LIVVPPDLELYRRASRKIFEILRRFST-PKVEQASIDEAFLDLTGLE------------  107

Query  133  KNSFFHLDRRDPTVGFTYDATDFHGHAYQAVPDVATDAASEWLRTRLLVASHLAAYLRNQ  192
                                                                LA  LR +
Sbjct  108  --------------------------------------------KLFGAEEALAKRLRRE  123

Query  193  LEYQKGYTATVGISTSKLLAKLVGN  217
            +  + G T ++GI+ +KLLAKL  +
Sbjct  124  IAEETGLTCSIGIAPNKLLAKLASD  148



Lambda      K        H        a         alpha
   0.319    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 753191712


Query= TCONS_00031000

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425885 pfam00817, IMS, impB/mucB/samB family. These proteins ...  128     2e-35


>CDD:425885 pfam00817, IMS, impB/mucB/samB family.  These proteins are involved 
in UV protection.
Length=148

 Score = 128 bits (325),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 55/205 (27%), Positives = 86/205 (42%), Gaps = 61/205 (30%)

Query  16   DYDCFYASVFEAEQPVLKSLPLAVQQ---KQIVVTCNYEARRRGLRKLQLIKEAKQICPD  72
            D D F+ASV     P LK  P+AV     + IV   +YEAR+ G+R    + EAK++CP+
Sbjct  2    DMDAFFASVELLRDPELKGKPVAVGGGNGRGIVAAASYEARKYGVRSGMPVFEAKKLCPN  61

Query  73   VVIVLGEDLTRFRNASKELYLFLQDFVWGKRVEKLGFDEVFLDVSDMVTYNVEMLNRNDL  132
             +IV+  DL  +R AS++++  L+ F    +VE+   DE FLD++ +             
Sbjct  62   -LIVVPPDLELYRRASRKIFEILRRFST-PKVEQASIDEAFLDLTGLE------------  107

Query  133  KNSFFHLDRRDPTVGFTYDATDFHGHAYQAVPDVATDAASEWLRTRLLVASHLAAYLRNQ  192
                                                                LA  LR +
Sbjct  108  --------------------------------------------KLFGAEEALAKRLRRE  123

Query  193  LEYQKGYTATVGISTSKLLAKLVGN  217
            +  + G T ++GI+ +KLLAKL  +
Sbjct  124  IAEETGLTCSIGIAPNKLLAKLASD  148



Lambda      K        H        a         alpha
   0.319    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 753191712


Query= TCONS_00030999

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425885 pfam00817, IMS, impB/mucB/samB family. These proteins ...  102     2e-29


>CDD:425885 pfam00817, IMS, impB/mucB/samB family.  These proteins are involved 
in UV protection.
Length=148

 Score = 102 bits (256),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 5/100 (5%)

Query  16   DYDCFYASVFEAEQPVLKSLPLAVQQ---KQIVVTCNYEARRRGLRKLQLIKEAKQICPD  72
            D D F+ASV     P LK  P+AV     + IV   +YEAR+ G+R    + EAK++CP+
Sbjct  2    DMDAFFASVELLRDPELKGKPVAVGGGNGRGIVAAASYEARKYGVRSGMPVFEAKKLCPN  61

Query  73   VVIVLGEDLTRFRNASKELYLFLQDFVWGKRVEKLGFDEV  112
             +IV+  DL  +R AS++++  L+ F    +VE+   DE 
Sbjct  62   -LIVVPPDLELYRRASRKIFEILRRFST-PKVEQASIDEA  99



Lambda      K        H        a         alpha
   0.327    0.142    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00035323

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372673 pfam13688, Reprolysin_5, Metallo-peptidase family M12      238     7e-76
CDD:372637 pfam13574, Reprolysin_2, Metallo-peptidase family M12B...  172     5e-51
CDD:404471 pfam13583, Reprolysin_4, Metallo-peptidase family M12B...  160     3e-46
CDD:459709 pfam00200, Disintegrin, Disintegrin                        119     4e-33


>CDD:372673 pfam13688, Reprolysin_5, Metallo-peptidase family M12.  
Length=191

 Score = 238 bits (608),  Expect = 7e-76, Method: Composition-based stats.
 Identities = 114/208 (55%), Positives = 135/208 (65%), Gaps = 17/208 (8%)

Query  99   KTKQVALVGIAADCSFRASFDNDDAAKQWIINMVNSASDVYEKSFNISIGLRNLTMTDKT  158
             T+ VAL+ +AADCS+ A+F  D AA+  IINMVN+AS+VYE+ FNIS+GL NLT++D T
Sbjct  1    STRTVALL-VAADCSYVAAFGGD-AAQANIINMVNTASNVYERDFNISLGLVNLTISDST  58

Query  159  CPETAPASTQWNMPCDQSNITQRLNLFSQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQ  218
            CP T P         D S+       FS WRG Q+DD AY  LM+NC  G   GLAWLGQ
Sbjct  59   CPYTPP----ACSTGDSSDRLSEFQDFSAWRGTQNDDLAYLFLMTNCSGG---GLAWLGQ  111

Query  219  LCNTEVTGDGSNSVSGTNVVVRVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQC  278
            LCN+   G  S  VSG NVVV  +   WQVFAHE GH FGAVHDCDS T       SSQC
Sbjct  112  LCNSGSAGSVSTRVSGNNVVVS-TATEWQVFAHEIGHNFGAVHDCDSST-------SSQC  163

Query  279  CPYNRGTCDANGKYIMNPSTGADITAFS  306
            CP +  TC A G+YIMNPS+  + T FS
Sbjct  164  CPPSNSTCPAGGRYIMNPSSSPNSTDFS  191


>CDD:372637 pfam13574, Reprolysin_2, Metallo-peptidase family M12B Reprolysin-like. 
 This zinc-binding metallo-peptidase has the characteristic 
binding motif HExxGHxxGxxH of Reprolysin-like peptidases 
of family M12B.
Length=193

 Score = 172 bits (438),  Expect = 5e-51, Method: Composition-based stats.
 Identities = 75/201 (37%), Positives = 99/201 (49%), Gaps = 24/201 (12%)

Query  128  IINMVNSASDVYEK-SFNISIGLRNLTMTDKTCPETAPASTQWNMPCDQS-NITQRLNLF  185
            ++N+VN  + +YE    NI+ GL N        P T  AS   N  C+    I +RLN  
Sbjct  7    LVNVVNRVNQIYEPDDININGGLVNPG----EIPATTSASDSGNNYCNSPTTIVRRLNFL  62

Query  186  SQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQLCNTE------VTGDGSNSVSGTNVVV  239
            SQWRG+Q    A+   M    +G E+GLA++GQ+C          TG  + +  G+    
Sbjct  63   SQWRGEQDYCLAHLVTMGTF-SGGELGLAYVGQICQKGASSPKTNTGLSTTTNYGSFNYP  121

Query  240  RVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQCCPYNRGT--CDANGKYIMNPS  297
                  W V AHE GH FGA HDCD    A      S  C  N  T  C ANG +IMNP+
Sbjct  122  TQE---WDVVAHEVGHNFGATHDCDGSQYA------SSGCERNAATSVCSANGSFIMNPA  172

Query  298  TGADITAFSPCTIGNICSALG  318
            + ++   FSPC+I  IC  LG
Sbjct  173  SKSNNDLFSPCSISLICDVLG  193


>CDD:404471 pfam13583, Reprolysin_4, Metallo-peptidase family M12B Reprolysin-like. 
 This zinc-binding metallo-peptidase has the characteristic 
binding motif HExxGHxxGxxH of Reprolysin-like peptidases 
of family M12B.
Length=203

 Score = 160 bits (405),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 80/223 (36%), Positives = 118/223 (53%), Gaps = 28/223 (13%)

Query  100  TKQVALVGIAADCSFRASFDNDDAAKQWIINMVNSASDVYEKSFNISIGLRNLTMTDKTC  159
            T++V  V +A DC++ ASF + D  +  I   V +A++VY + FN+S+ L    ++D+  
Sbjct  1    TRRVYRVAVATDCTYSASFGSVDELRANINATVTTANEVYGRDFNVSLAL----ISDRDV  56

Query  160  PETAPASTQWNMPCDQSNI-TQRLNLFSQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQ  218
              T  ++  +N  C   ++   RL   + WR   + D AY TLM+  P+G  VG+AW+G 
Sbjct  57   IYTDSSTDSFNADCSGGDLGNWRLATLTSWRDSLNYDLAYLTLMTG-PSGQNVGVAWVGA  115

Query  219  LCNTEVTGDGSNSVSGTNVVVRVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQC  278
            LC++      ++        V  S   W +FAHE GHTFGAVHDC           SSQ 
Sbjct  116  LCSSARQNAKAS-------GVARSRDEWDIFAHEIGHTFGAVHDC-----------SSQG  157

Query  279  CPYNRGTCDANGKYIMNPSTGADITAFSPCTI----GNICSAL  317
               +  T D +G+ IM+ ++ A  TAFSPCTI    GN CS  
Sbjct  158  EGLSSSTEDGSGQTIMSYASTASQTAFSPCTIRNINGNPCSQA  200


>CDD:459709 pfam00200, Disintegrin, Disintegrin.  
Length=74

 Score = 119 bits (300),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 52/76 (68%), Gaps = 2/76 (3%)

Query  347  EAGEDCDCGGESSCGDNPCCDAKTCKFKSGAVCDDANDSCCSQCQFSPAGTVCRASLGEC  406
            E GE+CDCG    C ++PCCDAKTCK K GA C  ++  CC+ CQF PAGTVCR S  EC
Sbjct  1    EEGEECDCGSLEECTNDPCCDAKTCKLKPGAQC--SSGPCCTNCQFKPAGTVCRPSKDEC  58

Query  407  DLQETCTGNSSTCPAD  422
            DL E C G S+ CP D
Sbjct  59   DLPEYCNGTSAECPPD  74



Lambda      K        H        a         alpha
   0.317    0.132    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00035324

Length=785
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372673 pfam13688, Reprolysin_5, Metallo-peptidase family M12      248     4e-78
CDD:372637 pfam13574, Reprolysin_2, Metallo-peptidase family M12B...  180     7e-53
CDD:404471 pfam13583, Reprolysin_4, Metallo-peptidase family M12B...  165     2e-47
CDD:459709 pfam00200, Disintegrin, Disintegrin                        127     1e-35


>CDD:372673 pfam13688, Reprolysin_5, Metallo-peptidase family M12.  
Length=191

 Score = 248 bits (634),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 114/208 (55%), Positives = 135/208 (65%), Gaps = 17/208 (8%)

Query  277  KTKQVALVGIAADCSFRASFDNDDAAKQWIINMVNSASDVYEKSFNISIGLRNLTMTDKT  336
             T+ VAL+ +AADCS+ A+F  D AA+  IINMVN+AS+VYE+ FNIS+GL NLT++D T
Sbjct  1    STRTVALL-VAADCSYVAAFGGD-AAQANIINMVNTASNVYERDFNISLGLVNLTISDST  58

Query  337  CPETAPASTQWNMPCDQSNITQRLNLFSQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQ  396
            CP T P         D S+       FS WRG Q+DD AY  LM+NC  G   GLAWLGQ
Sbjct  59   CPYTPP----ACSTGDSSDRLSEFQDFSAWRGTQNDDLAYLFLMTNCSGG---GLAWLGQ  111

Query  397  LCNTEVTGDGSNSVSGTNVVVRVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQC  456
            LCN+   G  S  VSG NVVV  +   WQVFAHE GH FGAVHDCDS T       SSQC
Sbjct  112  LCNSGSAGSVSTRVSGNNVVVS-TATEWQVFAHEIGHNFGAVHDCDSST-------SSQC  163

Query  457  CPYNRGTCDANGKYIMNPSTGADITAFS  484
            CP +  TC A G+YIMNPS+  + T FS
Sbjct  164  CPPSNSTCPAGGRYIMNPSSSPNSTDFS  191


>CDD:372637 pfam13574, Reprolysin_2, Metallo-peptidase family M12B Reprolysin-like. 
 This zinc-binding metallo-peptidase has the characteristic 
binding motif HExxGHxxGxxH of Reprolysin-like peptidases 
of family M12B.
Length=193

 Score = 180 bits (457),  Expect = 7e-53, Method: Composition-based stats.
 Identities = 75/201 (37%), Positives = 99/201 (49%), Gaps = 24/201 (12%)

Query  306  IINMVNSASDVYEK-SFNISIGLRNLTMTDKTCPETAPASTQWNMPCDQS-NITQRLNLF  363
            ++N+VN  + +YE    NI+ GL N        P T  AS   N  C+    I +RLN  
Sbjct  7    LVNVVNRVNQIYEPDDININGGLVNPG----EIPATTSASDSGNNYCNSPTTIVRRLNFL  62

Query  364  SQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQLCNTE------VTGDGSNSVSGTNVVV  417
            SQWRG+Q    A+   M    +G E+GLA++GQ+C          TG  + +  G+    
Sbjct  63   SQWRGEQDYCLAHLVTMGTF-SGGELGLAYVGQICQKGASSPKTNTGLSTTTNYGSFNYP  121

Query  418  RVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQCCPYNRGT--CDANGKYIMNPS  475
                  W V AHE GH FGA HDCD    A      S  C  N  T  C ANG +IMNP+
Sbjct  122  TQE---WDVVAHEVGHNFGATHDCDGSQYA------SSGCERNAATSVCSANGSFIMNPA  172

Query  476  TGADITAFSPCTIGNICSALG  496
            + ++   FSPC+I  IC  LG
Sbjct  173  SKSNNDLFSPCSISLICDVLG  193


>CDD:404471 pfam13583, Reprolysin_4, Metallo-peptidase family M12B Reprolysin-like. 
 This zinc-binding metallo-peptidase has the characteristic 
binding motif HExxGHxxGxxH of Reprolysin-like peptidases 
of family M12B.
Length=203

 Score = 165 bits (418),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 80/223 (36%), Positives = 118/223 (53%), Gaps = 28/223 (13%)

Query  278  TKQVALVGIAADCSFRASFDNDDAAKQWIINMVNSASDVYEKSFNISIGLRNLTMTDKTC  337
            T++V  V +A DC++ ASF + D  +  I   V +A++VY + FN+S+ L    ++D+  
Sbjct  1    TRRVYRVAVATDCTYSASFGSVDELRANINATVTTANEVYGRDFNVSLAL----ISDRDV  56

Query  338  PETAPASTQWNMPCDQSNI-TQRLNLFSQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQ  396
              T  ++  +N  C   ++   RL   + WR   + D AY TLM+  P+G  VG+AW+G 
Sbjct  57   IYTDSSTDSFNADCSGGDLGNWRLATLTSWRDSLNYDLAYLTLMTG-PSGQNVGVAWVGA  115

Query  397  LCNTEVTGDGSNSVSGTNVVVRVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQC  456
            LC++      ++        V  S   W +FAHE GHTFGAVHDC           SSQ 
Sbjct  116  LCSSARQNAKAS-------GVARSRDEWDIFAHEIGHTFGAVHDC-----------SSQG  157

Query  457  CPYNRGTCDANGKYIMNPSTGADITAFSPCTI----GNICSAL  495
               +  T D +G+ IM+ ++ A  TAFSPCTI    GN CS  
Sbjct  158  EGLSSSTEDGSGQTIMSYASTASQTAFSPCTIRNINGNPCSQA  200


>CDD:459709 pfam00200, Disintegrin, Disintegrin.  
Length=74

 Score = 127 bits (322),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 52/76 (68%), Gaps = 2/76 (3%)

Query  525  EAGEDCDCGGESSCGDNPCCDAKTCKFKSGAVCDDANDSCCSQCQFSPAGTVCRASLGEC  584
            E GE+CDCG    C ++PCCDAKTCK K GA C  ++  CC+ CQF PAGTVCR S  EC
Sbjct  1    EEGEECDCGSLEECTNDPCCDAKTCKLKPGAQC--SSGPCCTNCQFKPAGTVCRPSKDEC  58

Query  585  DLQETCTGNSSTCPAD  600
            DL E C G S+ CP D
Sbjct  59   DLPEYCNGTSAECPPD  74



Lambda      K        H        a         alpha
   0.317    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1005510032


Query= TCONS_00031001

Length=785
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372673 pfam13688, Reprolysin_5, Metallo-peptidase family M12      248     4e-78
CDD:372637 pfam13574, Reprolysin_2, Metallo-peptidase family M12B...  180     7e-53
CDD:404471 pfam13583, Reprolysin_4, Metallo-peptidase family M12B...  165     2e-47
CDD:459709 pfam00200, Disintegrin, Disintegrin                        127     1e-35


>CDD:372673 pfam13688, Reprolysin_5, Metallo-peptidase family M12.  
Length=191

 Score = 248 bits (634),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 114/208 (55%), Positives = 135/208 (65%), Gaps = 17/208 (8%)

Query  277  KTKQVALVGIAADCSFRASFDNDDAAKQWIINMVNSASDVYEKSFNISIGLRNLTMTDKT  336
             T+ VAL+ +AADCS+ A+F  D AA+  IINMVN+AS+VYE+ FNIS+GL NLT++D T
Sbjct  1    STRTVALL-VAADCSYVAAFGGD-AAQANIINMVNTASNVYERDFNISLGLVNLTISDST  58

Query  337  CPETAPASTQWNMPCDQSNITQRLNLFSQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQ  396
            CP T P         D S+       FS WRG Q+DD AY  LM+NC  G   GLAWLGQ
Sbjct  59   CPYTPP----ACSTGDSSDRLSEFQDFSAWRGTQNDDLAYLFLMTNCSGG---GLAWLGQ  111

Query  397  LCNTEVTGDGSNSVSGTNVVVRVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQC  456
            LCN+   G  S  VSG NVVV  +   WQVFAHE GH FGAVHDCDS T       SSQC
Sbjct  112  LCNSGSAGSVSTRVSGNNVVVS-TATEWQVFAHEIGHNFGAVHDCDSST-------SSQC  163

Query  457  CPYNRGTCDANGKYIMNPSTGADITAFS  484
            CP +  TC A G+YIMNPS+  + T FS
Sbjct  164  CPPSNSTCPAGGRYIMNPSSSPNSTDFS  191


>CDD:372637 pfam13574, Reprolysin_2, Metallo-peptidase family M12B Reprolysin-like. 
 This zinc-binding metallo-peptidase has the characteristic 
binding motif HExxGHxxGxxH of Reprolysin-like peptidases 
of family M12B.
Length=193

 Score = 180 bits (457),  Expect = 7e-53, Method: Composition-based stats.
 Identities = 75/201 (37%), Positives = 99/201 (49%), Gaps = 24/201 (12%)

Query  306  IINMVNSASDVYEK-SFNISIGLRNLTMTDKTCPETAPASTQWNMPCDQS-NITQRLNLF  363
            ++N+VN  + +YE    NI+ GL N        P T  AS   N  C+    I +RLN  
Sbjct  7    LVNVVNRVNQIYEPDDININGGLVNPG----EIPATTSASDSGNNYCNSPTTIVRRLNFL  62

Query  364  SQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQLCNTE------VTGDGSNSVSGTNVVV  417
            SQWRG+Q    A+   M    +G E+GLA++GQ+C          TG  + +  G+    
Sbjct  63   SQWRGEQDYCLAHLVTMGTF-SGGELGLAYVGQICQKGASSPKTNTGLSTTTNYGSFNYP  121

Query  418  RVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQCCPYNRGT--CDANGKYIMNPS  475
                  W V AHE GH FGA HDCD    A      S  C  N  T  C ANG +IMNP+
Sbjct  122  TQE---WDVVAHEVGHNFGATHDCDGSQYA------SSGCERNAATSVCSANGSFIMNPA  172

Query  476  TGADITAFSPCTIGNICSALG  496
            + ++   FSPC+I  IC  LG
Sbjct  173  SKSNNDLFSPCSISLICDVLG  193


>CDD:404471 pfam13583, Reprolysin_4, Metallo-peptidase family M12B Reprolysin-like. 
 This zinc-binding metallo-peptidase has the characteristic 
binding motif HExxGHxxGxxH of Reprolysin-like peptidases 
of family M12B.
Length=203

 Score = 165 bits (418),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 80/223 (36%), Positives = 118/223 (53%), Gaps = 28/223 (13%)

Query  278  TKQVALVGIAADCSFRASFDNDDAAKQWIINMVNSASDVYEKSFNISIGLRNLTMTDKTC  337
            T++V  V +A DC++ ASF + D  +  I   V +A++VY + FN+S+ L    ++D+  
Sbjct  1    TRRVYRVAVATDCTYSASFGSVDELRANINATVTTANEVYGRDFNVSLAL----ISDRDV  56

Query  338  PETAPASTQWNMPCDQSNI-TQRLNLFSQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQ  396
              T  ++  +N  C   ++   RL   + WR   + D AY TLM+  P+G  VG+AW+G 
Sbjct  57   IYTDSSTDSFNADCSGGDLGNWRLATLTSWRDSLNYDLAYLTLMTG-PSGQNVGVAWVGA  115

Query  397  LCNTEVTGDGSNSVSGTNVVVRVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQC  456
            LC++      ++        V  S   W +FAHE GHTFGAVHDC           SSQ 
Sbjct  116  LCSSARQNAKAS-------GVARSRDEWDIFAHEIGHTFGAVHDC-----------SSQG  157

Query  457  CPYNRGTCDANGKYIMNPSTGADITAFSPCTI----GNICSAL  495
               +  T D +G+ IM+ ++ A  TAFSPCTI    GN CS  
Sbjct  158  EGLSSSTEDGSGQTIMSYASTASQTAFSPCTIRNINGNPCSQA  200


>CDD:459709 pfam00200, Disintegrin, Disintegrin.  
Length=74

 Score = 127 bits (322),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 52/76 (68%), Gaps = 2/76 (3%)

Query  525  EAGEDCDCGGESSCGDNPCCDAKTCKFKSGAVCDDANDSCCSQCQFSPAGTVCRASLGEC  584
            E GE+CDCG    C ++PCCDAKTCK K GA C  ++  CC+ CQF PAGTVCR S  EC
Sbjct  1    EEGEECDCGSLEECTNDPCCDAKTCKLKPGAQC--SSGPCCTNCQFKPAGTVCRPSKDEC  58

Query  585  DLQETCTGNSSTCPAD  600
            DL E C G S+ CP D
Sbjct  59   DLPEYCNGTSAECPPD  74



Lambda      K        H        a         alpha
   0.317    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1005510032


Query= TCONS_00031002

Length=785
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372673 pfam13688, Reprolysin_5, Metallo-peptidase family M12      248     4e-78
CDD:372637 pfam13574, Reprolysin_2, Metallo-peptidase family M12B...  180     7e-53
CDD:404471 pfam13583, Reprolysin_4, Metallo-peptidase family M12B...  165     2e-47
CDD:459709 pfam00200, Disintegrin, Disintegrin                        127     1e-35


>CDD:372673 pfam13688, Reprolysin_5, Metallo-peptidase family M12.  
Length=191

 Score = 248 bits (634),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 114/208 (55%), Positives = 135/208 (65%), Gaps = 17/208 (8%)

Query  277  KTKQVALVGIAADCSFRASFDNDDAAKQWIINMVNSASDVYEKSFNISIGLRNLTMTDKT  336
             T+ VAL+ +AADCS+ A+F  D AA+  IINMVN+AS+VYE+ FNIS+GL NLT++D T
Sbjct  1    STRTVALL-VAADCSYVAAFGGD-AAQANIINMVNTASNVYERDFNISLGLVNLTISDST  58

Query  337  CPETAPASTQWNMPCDQSNITQRLNLFSQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQ  396
            CP T P         D S+       FS WRG Q+DD AY  LM+NC  G   GLAWLGQ
Sbjct  59   CPYTPP----ACSTGDSSDRLSEFQDFSAWRGTQNDDLAYLFLMTNCSGG---GLAWLGQ  111

Query  397  LCNTEVTGDGSNSVSGTNVVVRVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQC  456
            LCN+   G  S  VSG NVVV  +   WQVFAHE GH FGAVHDCDS T       SSQC
Sbjct  112  LCNSGSAGSVSTRVSGNNVVVS-TATEWQVFAHEIGHNFGAVHDCDSST-------SSQC  163

Query  457  CPYNRGTCDANGKYIMNPSTGADITAFS  484
            CP +  TC A G+YIMNPS+  + T FS
Sbjct  164  CPPSNSTCPAGGRYIMNPSSSPNSTDFS  191


>CDD:372637 pfam13574, Reprolysin_2, Metallo-peptidase family M12B Reprolysin-like. 
 This zinc-binding metallo-peptidase has the characteristic 
binding motif HExxGHxxGxxH of Reprolysin-like peptidases 
of family M12B.
Length=193

 Score = 180 bits (457),  Expect = 7e-53, Method: Composition-based stats.
 Identities = 75/201 (37%), Positives = 99/201 (49%), Gaps = 24/201 (12%)

Query  306  IINMVNSASDVYEK-SFNISIGLRNLTMTDKTCPETAPASTQWNMPCDQS-NITQRLNLF  363
            ++N+VN  + +YE    NI+ GL N        P T  AS   N  C+    I +RLN  
Sbjct  7    LVNVVNRVNQIYEPDDININGGLVNPG----EIPATTSASDSGNNYCNSPTTIVRRLNFL  62

Query  364  SQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQLCNTE------VTGDGSNSVSGTNVVV  417
            SQWRG+Q    A+   M    +G E+GLA++GQ+C          TG  + +  G+    
Sbjct  63   SQWRGEQDYCLAHLVTMGTF-SGGELGLAYVGQICQKGASSPKTNTGLSTTTNYGSFNYP  121

Query  418  RVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQCCPYNRGT--CDANGKYIMNPS  475
                  W V AHE GH FGA HDCD    A      S  C  N  T  C ANG +IMNP+
Sbjct  122  TQE---WDVVAHEVGHNFGATHDCDGSQYA------SSGCERNAATSVCSANGSFIMNPA  172

Query  476  TGADITAFSPCTIGNICSALG  496
            + ++   FSPC+I  IC  LG
Sbjct  173  SKSNNDLFSPCSISLICDVLG  193


>CDD:404471 pfam13583, Reprolysin_4, Metallo-peptidase family M12B Reprolysin-like. 
 This zinc-binding metallo-peptidase has the characteristic 
binding motif HExxGHxxGxxH of Reprolysin-like peptidases 
of family M12B.
Length=203

 Score = 165 bits (418),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 80/223 (36%), Positives = 118/223 (53%), Gaps = 28/223 (13%)

Query  278  TKQVALVGIAADCSFRASFDNDDAAKQWIINMVNSASDVYEKSFNISIGLRNLTMTDKTC  337
            T++V  V +A DC++ ASF + D  +  I   V +A++VY + FN+S+ L    ++D+  
Sbjct  1    TRRVYRVAVATDCTYSASFGSVDELRANINATVTTANEVYGRDFNVSLAL----ISDRDV  56

Query  338  PETAPASTQWNMPCDQSNI-TQRLNLFSQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQ  396
              T  ++  +N  C   ++   RL   + WR   + D AY TLM+  P+G  VG+AW+G 
Sbjct  57   IYTDSSTDSFNADCSGGDLGNWRLATLTSWRDSLNYDLAYLTLMTG-PSGQNVGVAWVGA  115

Query  397  LCNTEVTGDGSNSVSGTNVVVRVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQC  456
            LC++      ++        V  S   W +FAHE GHTFGAVHDC           SSQ 
Sbjct  116  LCSSARQNAKAS-------GVARSRDEWDIFAHEIGHTFGAVHDC-----------SSQG  157

Query  457  CPYNRGTCDANGKYIMNPSTGADITAFSPCTI----GNICSAL  495
               +  T D +G+ IM+ ++ A  TAFSPCTI    GN CS  
Sbjct  158  EGLSSSTEDGSGQTIMSYASTASQTAFSPCTIRNINGNPCSQA  200


>CDD:459709 pfam00200, Disintegrin, Disintegrin.  
Length=74

 Score = 127 bits (322),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 52/76 (68%), Gaps = 2/76 (3%)

Query  525  EAGEDCDCGGESSCGDNPCCDAKTCKFKSGAVCDDANDSCCSQCQFSPAGTVCRASLGEC  584
            E GE+CDCG    C ++PCCDAKTCK K GA C  ++  CC+ CQF PAGTVCR S  EC
Sbjct  1    EEGEECDCGSLEECTNDPCCDAKTCKLKPGAQC--SSGPCCTNCQFKPAGTVCRPSKDEC  58

Query  585  DLQETCTGNSSTCPAD  600
            DL E C G S+ CP D
Sbjct  59   DLPEYCNGTSAECPPD  74



Lambda      K        H        a         alpha
   0.317    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1005510032


Query= TCONS_00031003

Length=785
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372673 pfam13688, Reprolysin_5, Metallo-peptidase family M12      248     4e-78
CDD:372637 pfam13574, Reprolysin_2, Metallo-peptidase family M12B...  180     7e-53
CDD:404471 pfam13583, Reprolysin_4, Metallo-peptidase family M12B...  165     2e-47
CDD:459709 pfam00200, Disintegrin, Disintegrin                        127     1e-35


>CDD:372673 pfam13688, Reprolysin_5, Metallo-peptidase family M12.  
Length=191

 Score = 248 bits (634),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 114/208 (55%), Positives = 135/208 (65%), Gaps = 17/208 (8%)

Query  277  KTKQVALVGIAADCSFRASFDNDDAAKQWIINMVNSASDVYEKSFNISIGLRNLTMTDKT  336
             T+ VAL+ +AADCS+ A+F  D AA+  IINMVN+AS+VYE+ FNIS+GL NLT++D T
Sbjct  1    STRTVALL-VAADCSYVAAFGGD-AAQANIINMVNTASNVYERDFNISLGLVNLTISDST  58

Query  337  CPETAPASTQWNMPCDQSNITQRLNLFSQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQ  396
            CP T P         D S+       FS WRG Q+DD AY  LM+NC  G   GLAWLGQ
Sbjct  59   CPYTPP----ACSTGDSSDRLSEFQDFSAWRGTQNDDLAYLFLMTNCSGG---GLAWLGQ  111

Query  397  LCNTEVTGDGSNSVSGTNVVVRVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQC  456
            LCN+   G  S  VSG NVVV  +   WQVFAHE GH FGAVHDCDS T       SSQC
Sbjct  112  LCNSGSAGSVSTRVSGNNVVVS-TATEWQVFAHEIGHNFGAVHDCDSST-------SSQC  163

Query  457  CPYNRGTCDANGKYIMNPSTGADITAFS  484
            CP +  TC A G+YIMNPS+  + T FS
Sbjct  164  CPPSNSTCPAGGRYIMNPSSSPNSTDFS  191


>CDD:372637 pfam13574, Reprolysin_2, Metallo-peptidase family M12B Reprolysin-like. 
 This zinc-binding metallo-peptidase has the characteristic 
binding motif HExxGHxxGxxH of Reprolysin-like peptidases 
of family M12B.
Length=193

 Score = 180 bits (457),  Expect = 7e-53, Method: Composition-based stats.
 Identities = 75/201 (37%), Positives = 99/201 (49%), Gaps = 24/201 (12%)

Query  306  IINMVNSASDVYEK-SFNISIGLRNLTMTDKTCPETAPASTQWNMPCDQS-NITQRLNLF  363
            ++N+VN  + +YE    NI+ GL N        P T  AS   N  C+    I +RLN  
Sbjct  7    LVNVVNRVNQIYEPDDININGGLVNPG----EIPATTSASDSGNNYCNSPTTIVRRLNFL  62

Query  364  SQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQLCNTE------VTGDGSNSVSGTNVVV  417
            SQWRG+Q    A+   M    +G E+GLA++GQ+C          TG  + +  G+    
Sbjct  63   SQWRGEQDYCLAHLVTMGTF-SGGELGLAYVGQICQKGASSPKTNTGLSTTTNYGSFNYP  121

Query  418  RVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQCCPYNRGT--CDANGKYIMNPS  475
                  W V AHE GH FGA HDCD    A      S  C  N  T  C ANG +IMNP+
Sbjct  122  TQE---WDVVAHEVGHNFGATHDCDGSQYA------SSGCERNAATSVCSANGSFIMNPA  172

Query  476  TGADITAFSPCTIGNICSALG  496
            + ++   FSPC+I  IC  LG
Sbjct  173  SKSNNDLFSPCSISLICDVLG  193


>CDD:404471 pfam13583, Reprolysin_4, Metallo-peptidase family M12B Reprolysin-like. 
 This zinc-binding metallo-peptidase has the characteristic 
binding motif HExxGHxxGxxH of Reprolysin-like peptidases 
of family M12B.
Length=203

 Score = 165 bits (418),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 80/223 (36%), Positives = 118/223 (53%), Gaps = 28/223 (13%)

Query  278  TKQVALVGIAADCSFRASFDNDDAAKQWIINMVNSASDVYEKSFNISIGLRNLTMTDKTC  337
            T++V  V +A DC++ ASF + D  +  I   V +A++VY + FN+S+ L    ++D+  
Sbjct  1    TRRVYRVAVATDCTYSASFGSVDELRANINATVTTANEVYGRDFNVSLAL----ISDRDV  56

Query  338  PETAPASTQWNMPCDQSNI-TQRLNLFSQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQ  396
              T  ++  +N  C   ++   RL   + WR   + D AY TLM+  P+G  VG+AW+G 
Sbjct  57   IYTDSSTDSFNADCSGGDLGNWRLATLTSWRDSLNYDLAYLTLMTG-PSGQNVGVAWVGA  115

Query  397  LCNTEVTGDGSNSVSGTNVVVRVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQC  456
            LC++      ++        V  S   W +FAHE GHTFGAVHDC           SSQ 
Sbjct  116  LCSSARQNAKAS-------GVARSRDEWDIFAHEIGHTFGAVHDC-----------SSQG  157

Query  457  CPYNRGTCDANGKYIMNPSTGADITAFSPCTI----GNICSAL  495
               +  T D +G+ IM+ ++ A  TAFSPCTI    GN CS  
Sbjct  158  EGLSSSTEDGSGQTIMSYASTASQTAFSPCTIRNINGNPCSQA  200


>CDD:459709 pfam00200, Disintegrin, Disintegrin.  
Length=74

 Score = 127 bits (322),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 52/76 (68%), Gaps = 2/76 (3%)

Query  525  EAGEDCDCGGESSCGDNPCCDAKTCKFKSGAVCDDANDSCCSQCQFSPAGTVCRASLGEC  584
            E GE+CDCG    C ++PCCDAKTCK K GA C  ++  CC+ CQF PAGTVCR S  EC
Sbjct  1    EEGEECDCGSLEECTNDPCCDAKTCKLKPGAQC--SSGPCCTNCQFKPAGTVCRPSKDEC  58

Query  585  DLQETCTGNSSTCPAD  600
            DL E C G S+ CP D
Sbjct  59   DLPEYCNGTSAECPPD  74



Lambda      K        H        a         alpha
   0.317    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1005510032


Query= TCONS_00031004

Length=785
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372673 pfam13688, Reprolysin_5, Metallo-peptidase family M12      248     4e-78
CDD:372637 pfam13574, Reprolysin_2, Metallo-peptidase family M12B...  180     7e-53
CDD:404471 pfam13583, Reprolysin_4, Metallo-peptidase family M12B...  165     2e-47
CDD:459709 pfam00200, Disintegrin, Disintegrin                        127     1e-35


>CDD:372673 pfam13688, Reprolysin_5, Metallo-peptidase family M12.  
Length=191

 Score = 248 bits (634),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 114/208 (55%), Positives = 135/208 (65%), Gaps = 17/208 (8%)

Query  277  KTKQVALVGIAADCSFRASFDNDDAAKQWIINMVNSASDVYEKSFNISIGLRNLTMTDKT  336
             T+ VAL+ +AADCS+ A+F  D AA+  IINMVN+AS+VYE+ FNIS+GL NLT++D T
Sbjct  1    STRTVALL-VAADCSYVAAFGGD-AAQANIINMVNTASNVYERDFNISLGLVNLTISDST  58

Query  337  CPETAPASTQWNMPCDQSNITQRLNLFSQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQ  396
            CP T P         D S+       FS WRG Q+DD AY  LM+NC  G   GLAWLGQ
Sbjct  59   CPYTPP----ACSTGDSSDRLSEFQDFSAWRGTQNDDLAYLFLMTNCSGG---GLAWLGQ  111

Query  397  LCNTEVTGDGSNSVSGTNVVVRVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQC  456
            LCN+   G  S  VSG NVVV  +   WQVFAHE GH FGAVHDCDS T       SSQC
Sbjct  112  LCNSGSAGSVSTRVSGNNVVVS-TATEWQVFAHEIGHNFGAVHDCDSST-------SSQC  163

Query  457  CPYNRGTCDANGKYIMNPSTGADITAFS  484
            CP +  TC A G+YIMNPS+  + T FS
Sbjct  164  CPPSNSTCPAGGRYIMNPSSSPNSTDFS  191


>CDD:372637 pfam13574, Reprolysin_2, Metallo-peptidase family M12B Reprolysin-like. 
 This zinc-binding metallo-peptidase has the characteristic 
binding motif HExxGHxxGxxH of Reprolysin-like peptidases 
of family M12B.
Length=193

 Score = 180 bits (457),  Expect = 7e-53, Method: Composition-based stats.
 Identities = 75/201 (37%), Positives = 99/201 (49%), Gaps = 24/201 (12%)

Query  306  IINMVNSASDVYEK-SFNISIGLRNLTMTDKTCPETAPASTQWNMPCDQS-NITQRLNLF  363
            ++N+VN  + +YE    NI+ GL N        P T  AS   N  C+    I +RLN  
Sbjct  7    LVNVVNRVNQIYEPDDININGGLVNPG----EIPATTSASDSGNNYCNSPTTIVRRLNFL  62

Query  364  SQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQLCNTE------VTGDGSNSVSGTNVVV  417
            SQWRG+Q    A+   M    +G E+GLA++GQ+C          TG  + +  G+    
Sbjct  63   SQWRGEQDYCLAHLVTMGTF-SGGELGLAYVGQICQKGASSPKTNTGLSTTTNYGSFNYP  121

Query  418  RVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQCCPYNRGT--CDANGKYIMNPS  475
                  W V AHE GH FGA HDCD    A      S  C  N  T  C ANG +IMNP+
Sbjct  122  TQE---WDVVAHEVGHNFGATHDCDGSQYA------SSGCERNAATSVCSANGSFIMNPA  172

Query  476  TGADITAFSPCTIGNICSALG  496
            + ++   FSPC+I  IC  LG
Sbjct  173  SKSNNDLFSPCSISLICDVLG  193


>CDD:404471 pfam13583, Reprolysin_4, Metallo-peptidase family M12B Reprolysin-like. 
 This zinc-binding metallo-peptidase has the characteristic 
binding motif HExxGHxxGxxH of Reprolysin-like peptidases 
of family M12B.
Length=203

 Score = 165 bits (418),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 80/223 (36%), Positives = 118/223 (53%), Gaps = 28/223 (13%)

Query  278  TKQVALVGIAADCSFRASFDNDDAAKQWIINMVNSASDVYEKSFNISIGLRNLTMTDKTC  337
            T++V  V +A DC++ ASF + D  +  I   V +A++VY + FN+S+ L    ++D+  
Sbjct  1    TRRVYRVAVATDCTYSASFGSVDELRANINATVTTANEVYGRDFNVSLAL----ISDRDV  56

Query  338  PETAPASTQWNMPCDQSNI-TQRLNLFSQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQ  396
              T  ++  +N  C   ++   RL   + WR   + D AY TLM+  P+G  VG+AW+G 
Sbjct  57   IYTDSSTDSFNADCSGGDLGNWRLATLTSWRDSLNYDLAYLTLMTG-PSGQNVGVAWVGA  115

Query  397  LCNTEVTGDGSNSVSGTNVVVRVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQC  456
            LC++      ++        V  S   W +FAHE GHTFGAVHDC           SSQ 
Sbjct  116  LCSSARQNAKAS-------GVARSRDEWDIFAHEIGHTFGAVHDC-----------SSQG  157

Query  457  CPYNRGTCDANGKYIMNPSTGADITAFSPCTI----GNICSAL  495
               +  T D +G+ IM+ ++ A  TAFSPCTI    GN CS  
Sbjct  158  EGLSSSTEDGSGQTIMSYASTASQTAFSPCTIRNINGNPCSQA  200


>CDD:459709 pfam00200, Disintegrin, Disintegrin.  
Length=74

 Score = 127 bits (322),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 52/76 (68%), Gaps = 2/76 (3%)

Query  525  EAGEDCDCGGESSCGDNPCCDAKTCKFKSGAVCDDANDSCCSQCQFSPAGTVCRASLGEC  584
            E GE+CDCG    C ++PCCDAKTCK K GA C  ++  CC+ CQF PAGTVCR S  EC
Sbjct  1    EEGEECDCGSLEECTNDPCCDAKTCKLKPGAQC--SSGPCCTNCQFKPAGTVCRPSKDEC  58

Query  585  DLQETCTGNSSTCPAD  600
            DL E C G S+ CP D
Sbjct  59   DLPEYCNGTSAECPPD  74



Lambda      K        H        a         alpha
   0.317    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1005510032


Query= TCONS_00031005

Length=747
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372673 pfam13688, Reprolysin_5, Metallo-peptidase family M12      246     1e-77
CDD:372637 pfam13574, Reprolysin_2, Metallo-peptidase family M12B...  178     2e-52
CDD:404471 pfam13583, Reprolysin_4, Metallo-peptidase family M12B...  163     6e-47
CDD:459709 pfam00200, Disintegrin, Disintegrin                        127     1e-35


>CDD:372673 pfam13688, Reprolysin_5, Metallo-peptidase family M12.  
Length=191

 Score = 246 bits (629),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 114/208 (55%), Positives = 135/208 (65%), Gaps = 17/208 (8%)

Query  277  KTKQVALVGIAADCSFRASFDNDDAAKQWIINMVNSASDVYEKSFNISIGLRNLTMTDKT  336
             T+ VAL+ +AADCS+ A+F  D AA+  IINMVN+AS+VYE+ FNIS+GL NLT++D T
Sbjct  1    STRTVALL-VAADCSYVAAFGGD-AAQANIINMVNTASNVYERDFNISLGLVNLTISDST  58

Query  337  CPETAPASTQWNMPCDQSNITQRLNLFSQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQ  396
            CP T P         D S+       FS WRG Q+DD AY  LM+NC  G   GLAWLGQ
Sbjct  59   CPYTPP----ACSTGDSSDRLSEFQDFSAWRGTQNDDLAYLFLMTNCSGG---GLAWLGQ  111

Query  397  LCNTEVTGDGSNSVSGTNVVVRVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQC  456
            LCN+   G  S  VSG NVVV  +   WQVFAHE GH FGAVHDCDS T       SSQC
Sbjct  112  LCNSGSAGSVSTRVSGNNVVVS-TATEWQVFAHEIGHNFGAVHDCDSST-------SSQC  163

Query  457  CPYNRGTCDANGKYIMNPSTGADITAFS  484
            CP +  TC A G+YIMNPS+  + T FS
Sbjct  164  CPPSNSTCPAGGRYIMNPSSSPNSTDFS  191


>CDD:372637 pfam13574, Reprolysin_2, Metallo-peptidase family M12B Reprolysin-like. 
 This zinc-binding metallo-peptidase has the characteristic 
binding motif HExxGHxxGxxH of Reprolysin-like peptidases 
of family M12B.
Length=193

 Score = 178 bits (453),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 75/201 (37%), Positives = 99/201 (49%), Gaps = 24/201 (12%)

Query  306  IINMVNSASDVYEK-SFNISIGLRNLTMTDKTCPETAPASTQWNMPCDQS-NITQRLNLF  363
            ++N+VN  + +YE    NI+ GL N        P T  AS   N  C+    I +RLN  
Sbjct  7    LVNVVNRVNQIYEPDDININGGLVNPG----EIPATTSASDSGNNYCNSPTTIVRRLNFL  62

Query  364  SQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQLCNTE------VTGDGSNSVSGTNVVV  417
            SQWRG+Q    A+   M    +G E+GLA++GQ+C          TG  + +  G+    
Sbjct  63   SQWRGEQDYCLAHLVTMGTF-SGGELGLAYVGQICQKGASSPKTNTGLSTTTNYGSFNYP  121

Query  418  RVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQCCPYNRGT--CDANGKYIMNPS  475
                  W V AHE GH FGA HDCD    A      S  C  N  T  C ANG +IMNP+
Sbjct  122  TQE---WDVVAHEVGHNFGATHDCDGSQYA------SSGCERNAATSVCSANGSFIMNPA  172

Query  476  TGADITAFSPCTIGNICSALG  496
            + ++   FSPC+I  IC  LG
Sbjct  173  SKSNNDLFSPCSISLICDVLG  193


>CDD:404471 pfam13583, Reprolysin_4, Metallo-peptidase family M12B Reprolysin-like. 
 This zinc-binding metallo-peptidase has the characteristic 
binding motif HExxGHxxGxxH of Reprolysin-like peptidases 
of family M12B.
Length=203

 Score = 163 bits (414),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 80/223 (36%), Positives = 118/223 (53%), Gaps = 28/223 (13%)

Query  278  TKQVALVGIAADCSFRASFDNDDAAKQWIINMVNSASDVYEKSFNISIGLRNLTMTDKTC  337
            T++V  V +A DC++ ASF + D  +  I   V +A++VY + FN+S+ L    ++D+  
Sbjct  1    TRRVYRVAVATDCTYSASFGSVDELRANINATVTTANEVYGRDFNVSLAL----ISDRDV  56

Query  338  PETAPASTQWNMPCDQSNI-TQRLNLFSQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQ  396
              T  ++  +N  C   ++   RL   + WR   + D AY TLM+  P+G  VG+AW+G 
Sbjct  57   IYTDSSTDSFNADCSGGDLGNWRLATLTSWRDSLNYDLAYLTLMTG-PSGQNVGVAWVGA  115

Query  397  LCNTEVTGDGSNSVSGTNVVVRVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQC  456
            LC++      ++        V  S   W +FAHE GHTFGAVHDC           SSQ 
Sbjct  116  LCSSARQNAKAS-------GVARSRDEWDIFAHEIGHTFGAVHDC-----------SSQG  157

Query  457  CPYNRGTCDANGKYIMNPSTGADITAFSPCTI----GNICSAL  495
               +  T D +G+ IM+ ++ A  TAFSPCTI    GN CS  
Sbjct  158  EGLSSSTEDGSGQTIMSYASTASQTAFSPCTIRNINGNPCSQA  200


>CDD:459709 pfam00200, Disintegrin, Disintegrin.  
Length=74

 Score = 127 bits (321),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 52/76 (68%), Gaps = 2/76 (3%)

Query  525  EAGEDCDCGGESSCGDNPCCDAKTCKFKSGAVCDDANDSCCSQCQFSPAGTVCRASLGEC  584
            E GE+CDCG    C ++PCCDAKTCK K GA C  ++  CC+ CQF PAGTVCR S  EC
Sbjct  1    EEGEECDCGSLEECTNDPCCDAKTCKLKPGAQC--SSGPCCTNCQFKPAGTVCRPSKDEC  58

Query  585  DLQETCTGNSSTCPAD  600
            DL E C G S+ CP D
Sbjct  59   DLPEYCNGTSAECPPD  74



Lambda      K        H        a         alpha
   0.317    0.131    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 950214256


Query= TCONS_00035325

Length=620
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372673 pfam13688, Reprolysin_5, Metallo-peptidase family M12      239     4e-76
CDD:372637 pfam13574, Reprolysin_2, Metallo-peptidase family M12B...  173     4e-51
CDD:404471 pfam13583, Reprolysin_4, Metallo-peptidase family M12B...  161     2e-46
CDD:459709 pfam00200, Disintegrin, Disintegrin                        118     7e-33


>CDD:372673 pfam13688, Reprolysin_5, Metallo-peptidase family M12.  
Length=191

 Score = 239 bits (611),  Expect = 4e-76, Method: Composition-based stats.
 Identities = 114/208 (55%), Positives = 135/208 (65%), Gaps = 17/208 (8%)

Query  138  KTKQVALVGIAADCSFRASFDNDDAAKQWIINMVNSASDVYEKSFNISIGLRNLTMTDKT  197
             T+ VAL+ +AADCS+ A+F  D AA+  IINMVN+AS+VYE+ FNIS+GL NLT++D T
Sbjct  1    STRTVALL-VAADCSYVAAFGGD-AAQANIINMVNTASNVYERDFNISLGLVNLTISDST  58

Query  198  CPETAPASTQWNMPCDQSNITQRLNLFSQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQ  257
            CP T P         D S+       FS WRG Q+DD AY  LM+NC  G   GLAWLGQ
Sbjct  59   CPYTPP----ACSTGDSSDRLSEFQDFSAWRGTQNDDLAYLFLMTNCSGG---GLAWLGQ  111

Query  258  LCNTEVTGDGSNSVSGTNVVVRVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQC  317
            LCN+   G  S  VSG NVVV  +   WQVFAHE GH FGAVHDCDS T       SSQC
Sbjct  112  LCNSGSAGSVSTRVSGNNVVVS-TATEWQVFAHEIGHNFGAVHDCDSST-------SSQC  163

Query  318  CPYNRGTCDANGKYIMNPSTGADITAFS  345
            CP +  TC A G+YIMNPS+  + T FS
Sbjct  164  CPPSNSTCPAGGRYIMNPSSSPNSTDFS  191


>CDD:372637 pfam13574, Reprolysin_2, Metallo-peptidase family M12B Reprolysin-like. 
 This zinc-binding metallo-peptidase has the characteristic 
binding motif HExxGHxxGxxH of Reprolysin-like peptidases 
of family M12B.
Length=193

 Score = 173 bits (439),  Expect = 4e-51, Method: Composition-based stats.
 Identities = 75/201 (37%), Positives = 99/201 (49%), Gaps = 24/201 (12%)

Query  167  IINMVNSASDVYEK-SFNISIGLRNLTMTDKTCPETAPASTQWNMPCDQS-NITQRLNLF  224
            ++N+VN  + +YE    NI+ GL N        P T  AS   N  C+    I +RLN  
Sbjct  7    LVNVVNRVNQIYEPDDININGGLVNPG----EIPATTSASDSGNNYCNSPTTIVRRLNFL  62

Query  225  SQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQLCNTE------VTGDGSNSVSGTNVVV  278
            SQWRG+Q    A+   M    +G E+GLA++GQ+C          TG  + +  G+    
Sbjct  63   SQWRGEQDYCLAHLVTMGTF-SGGELGLAYVGQICQKGASSPKTNTGLSTTTNYGSFNYP  121

Query  279  RVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQCCPYNRGT--CDANGKYIMNPS  336
                  W V AHE GH FGA HDCD    A      S  C  N  T  C ANG +IMNP+
Sbjct  122  TQE---WDVVAHEVGHNFGATHDCDGSQYA------SSGCERNAATSVCSANGSFIMNPA  172

Query  337  TGADITAFSPCTIGNICSALG  357
            + ++   FSPC+I  IC  LG
Sbjct  173  SKSNNDLFSPCSISLICDVLG  193


>CDD:404471 pfam13583, Reprolysin_4, Metallo-peptidase family M12B Reprolysin-like. 
 This zinc-binding metallo-peptidase has the characteristic 
binding motif HExxGHxxGxxH of Reprolysin-like peptidases 
of family M12B.
Length=203

 Score = 161 bits (408),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 80/223 (36%), Positives = 118/223 (53%), Gaps = 28/223 (13%)

Query  139  TKQVALVGIAADCSFRASFDNDDAAKQWIINMVNSASDVYEKSFNISIGLRNLTMTDKTC  198
            T++V  V +A DC++ ASF + D  +  I   V +A++VY + FN+S+ L    ++D+  
Sbjct  1    TRRVYRVAVATDCTYSASFGSVDELRANINATVTTANEVYGRDFNVSLAL----ISDRDV  56

Query  199  PETAPASTQWNMPCDQSNI-TQRLNLFSQWRGQQSDDNAYWTLMSNCPTGSEVGLAWLGQ  257
              T  ++  +N  C   ++   RL   + WR   + D AY TLM+  P+G  VG+AW+G 
Sbjct  57   IYTDSSTDSFNADCSGGDLGNWRLATLTSWRDSLNYDLAYLTLMTG-PSGQNVGVAWVGA  115

Query  258  LCNTEVTGDGSNSVSGTNVVVRVSGGGWQVFAHESGHTFGAVHDCDSMTCAQNLEASSQC  317
            LC++      ++        V  S   W +FAHE GHTFGAVHDC           SSQ 
Sbjct  116  LCSSARQNAKAS-------GVARSRDEWDIFAHEIGHTFGAVHDC-----------SSQG  157

Query  318  CPYNRGTCDANGKYIMNPSTGADITAFSPCTI----GNICSAL  356
               +  T D +G+ IM+ ++ A  TAFSPCTI    GN CS  
Sbjct  158  EGLSSSTEDGSGQTIMSYASTASQTAFSPCTIRNINGNPCSQA  200


>CDD:459709 pfam00200, Disintegrin, Disintegrin.  
Length=74

 Score = 118 bits (299),  Expect = 7e-33, Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 52/76 (68%), Gaps = 2/76 (3%)

Query  386  EAGEDCDCGGESSCGDNPCCDAKTCKFKSGAVCDDANDSCCSQCQFSPAGTVCRASLGEC  445
            E GE+CDCG    C ++PCCDAKTCK K GA C  ++  CC+ CQF PAGTVCR S  EC
Sbjct  1    EEGEECDCGSLEECTNDPCCDAKTCKLKPGAQC--SSGPCCTNCQFKPAGTVCRPSKDEC  58

Query  446  DLQETCTGNSSTCPAD  461
            DL E C G S+ CP D
Sbjct  59   DLPEYCNGTSAECPPD  74



Lambda      K        H        a         alpha
   0.317    0.132    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789057984


Query= TCONS_00035326

Length=539
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463426 pfam12002, MgsA_C, MgsA AAA+ ATPase C terminal. The Mg...  250     7e-82
CDD:465057 pfam16193, AAA_assoc_2, AAA C-terminal domain. AAA_ass...  108     4e-29
CDD:459627 pfam00004, AAA, ATPase family associated with various ...  66.1    1e-13


>CDD:463426 pfam12002, MgsA_C, MgsA AAA+ ATPase C terminal.  The MgsA protein 
possesses DNA-dependent ATPase and ssDNA annealing activities. 
MgsA contributes to the recovery of stalled replication 
forks and therefore prevents genomic instability caused 
by aberrant DNA replication. Additionally, MgsA may play a role 
in chromosomal segregation. This is consistent with a report 
that MgsA co-localizes with the replisome and affects chromosome 
segregation. This domain represents the C terminal 
region of MgsA.
Length=158

 Score = 250 bits (641),  Expect = 7e-82, Method: Composition-based stats.
 Identities = 91/149 (61%), Positives = 116/149 (78%), Gaps = 2/149 (1%)

Query  367  GSDPDAALYYLARMLQSGEDPLYIARRLVVVASEDIGLADNSMLPLAIATHSAVEKIGLP  426
            GSDPDAALY+LARML++GEDPL+IARRLV++ASEDIGLAD   L +A+A   AVE+IG+P
Sbjct  1    GSDPDAALYWLARMLEAGEDPLFIARRLVIIASEDIGLADPQALVVAVAAAQAVERIGMP  60

Query  427  EARINLAHATVAMALSKKSTRVYRALNNTFAALAEPGVAGLPVPIHLRNAPTRLMKELGY  486
            EARI LA A + +AL+ KS   Y A++   A + E G   LPVP+HLRNAPT+LMK+LGY
Sbjct  61   EARIPLAQAVIYLALAPKSNSAYLAIDAALADVREGGS--LPVPLHLRNAPTKLMKKLGY  118

Query  487  GKEYKYNPNYLDGQVVQDYLPEKLLGRKF  515
            GK YKY  +Y +G V Q YLP++L GR++
Sbjct  119  GKGYKYPHDYPNGYVKQQYLPDELKGRRY  147


>CDD:465057 pfam16193, AAA_assoc_2, AAA C-terminal domain.  AAA_assoc_2 is 
found at the C-terminus of a relatively small set of AAA domains 
in proteins ranging from archaeal to fungi, plants and 
mammals.
Length=81

 Score = 108 bits (272),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 50/75 (67%), Gaps = 5/75 (7%)

Query  297  VDDELIEYLARFSDGDARTSLNLLELAMDLSKRPS----MTKEELKRSLTKTLV-YDRAG  351
            +DDE +E LA  +DGDAR +LN LELA+  +        +T E L+ +L +  + YD+ G
Sbjct  7    LDDEALEALAELADGDARRALNALELAVLSTPPDDGGIHITLEILEEALQRKALRYDKDG  66

Query  352  DQHYDTISAFHKSIR  366
            D+HYD ISAFHKSIR
Sbjct  67   DEHYDLISAFHKSIR  81


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 66.1 bits (162),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 30/129 (23%)

Query  158  MILWGHAGTGKTTIARVIASMVGSRFVEINS---TSTGVAEC----KKIFAEARSELGLT  210
            ++L+G  GTGKTT+A+ +A  +G+ F+EI+     S  V E     +++F  A+      
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKL----  56

Query  211  GRKTIVFCDEIHRFSKSQQD--------------VFLGPVES--GQITLIGATTENPSFK  254
                ++F DEI   + S+                  L    S   ++ +I AT      K
Sbjct  57   -APCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNR--PDK  113

Query  255  VQNALLSRC  263
            +  ALL R 
Sbjct  114  LDPALLGRF  122



Lambda      K        H        a         alpha
   0.315    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 678301568


Query= TCONS_00035327

Length=539
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463426 pfam12002, MgsA_C, MgsA AAA+ ATPase C terminal. The Mg...  250     7e-82
CDD:465057 pfam16193, AAA_assoc_2, AAA C-terminal domain. AAA_ass...  108     4e-29
CDD:459627 pfam00004, AAA, ATPase family associated with various ...  66.1    1e-13


>CDD:463426 pfam12002, MgsA_C, MgsA AAA+ ATPase C terminal.  The MgsA protein 
possesses DNA-dependent ATPase and ssDNA annealing activities. 
MgsA contributes to the recovery of stalled replication 
forks and therefore prevents genomic instability caused 
by aberrant DNA replication. Additionally, MgsA may play a role 
in chromosomal segregation. This is consistent with a report 
that MgsA co-localizes with the replisome and affects chromosome 
segregation. This domain represents the C terminal 
region of MgsA.
Length=158

 Score = 250 bits (641),  Expect = 7e-82, Method: Composition-based stats.
 Identities = 91/149 (61%), Positives = 116/149 (78%), Gaps = 2/149 (1%)

Query  367  GSDPDAALYYLARMLQSGEDPLYIARRLVVVASEDIGLADNSMLPLAIATHSAVEKIGLP  426
            GSDPDAALY+LARML++GEDPL+IARRLV++ASEDIGLAD   L +A+A   AVE+IG+P
Sbjct  1    GSDPDAALYWLARMLEAGEDPLFIARRLVIIASEDIGLADPQALVVAVAAAQAVERIGMP  60

Query  427  EARINLAHATVAMALSKKSTRVYRALNNTFAALAEPGVAGLPVPIHLRNAPTRLMKELGY  486
            EARI LA A + +AL+ KS   Y A++   A + E G   LPVP+HLRNAPT+LMK+LGY
Sbjct  61   EARIPLAQAVIYLALAPKSNSAYLAIDAALADVREGGS--LPVPLHLRNAPTKLMKKLGY  118

Query  487  GKEYKYNPNYLDGQVVQDYLPEKLLGRKF  515
            GK YKY  +Y +G V Q YLP++L GR++
Sbjct  119  GKGYKYPHDYPNGYVKQQYLPDELKGRRY  147


>CDD:465057 pfam16193, AAA_assoc_2, AAA C-terminal domain.  AAA_assoc_2 is 
found at the C-terminus of a relatively small set of AAA domains 
in proteins ranging from archaeal to fungi, plants and 
mammals.
Length=81

 Score = 108 bits (272),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 50/75 (67%), Gaps = 5/75 (7%)

Query  297  VDDELIEYLARFSDGDARTSLNLLELAMDLSKRPS----MTKEELKRSLTKTLV-YDRAG  351
            +DDE +E LA  +DGDAR +LN LELA+  +        +T E L+ +L +  + YD+ G
Sbjct  7    LDDEALEALAELADGDARRALNALELAVLSTPPDDGGIHITLEILEEALQRKALRYDKDG  66

Query  352  DQHYDTISAFHKSIR  366
            D+HYD ISAFHKSIR
Sbjct  67   DEHYDLISAFHKSIR  81


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 66.1 bits (162),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 30/129 (23%)

Query  158  MILWGHAGTGKTTIARVIASMVGSRFVEINS---TSTGVAEC----KKIFAEARSELGLT  210
            ++L+G  GTGKTT+A+ +A  +G+ F+EI+     S  V E     +++F  A+      
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKL----  56

Query  211  GRKTIVFCDEIHRFSKSQQD--------------VFLGPVES--GQITLIGATTENPSFK  254
                ++F DEI   + S+                  L    S   ++ +I AT      K
Sbjct  57   -APCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNR--PDK  113

Query  255  VQNALLSRC  263
            +  ALL R 
Sbjct  114  LDPALLGRF  122



Lambda      K        H        a         alpha
   0.315    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 678301568


Query= TCONS_00031006

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  233     3e-73


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 233 bits (596),  Expect = 3e-73, Method: Composition-based stats.
 Identities = 96/387 (25%), Positives = 159/387 (41%), Gaps = 42/387 (11%)

Query  81   PIVNMGQGFFGYNPPQFALDAAKEALDRVECNQYSPTKGRPRLKKAIADAYSSSFGRTIN  140
              +N+G   +  +       A K+AL     N Y PT G P L++A+A     S    ++
Sbjct  2    DKINLGSNEYLGDTLPAVAKAEKDALAGGTRNLYGPTDGHPELREALAKFLGRSPVLKLD  61

Query  141  PDTEVSITTGANEGMLSAFMGFIEPGDEVIIFEPFFDQYISNIEMPGGTIRYVPLHPPKD  200
             +  V   +GA   + +       PGD +++  P +  YI    + GG +   PL+   D
Sbjct  62   REAAVVFGSGAGANIEALIFLLANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSND  121

Query  201  GATRTSPASEWTIDFEELEKTINSKTKMIVLNSPHNPVGKVFSRDELERIGQLCVKHNLI  260
                      + +DF+ LE  +  K K+++  SPHNP G V + +ELE++  L  +HN++
Sbjct  122  ----------FHLDFDALEAALKEKPKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNIL  171

Query  261  ILSDEVYDRLYY---VPFTRIATLSPELWERTLTVGSAGKAFYATGWRVGYLIGPEHLIK  317
            +L DE Y    +         A L+       L VGS  KAF   GWRVGY++G   +I 
Sbjct  172  LLVDEAYAGFVFGSPDAVATRALLAEGPN--LLVVGSFSKAFGLAGWRVGYILGNAAVIS  229

Query  318  YVAAAHTRICYSSVSPLQEAAAVAFEQADKVGFW-DQSRREMKQKMERFCEVFDELNIPY  376
             +         S  + LQ AAA A      V    ++ R+ +K++ +   +      +  
Sbjct  230  QLRKLARPFYSS--THLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLQAAGLSV  287

Query  377  SDPEGGYFVLANMSSVKLPEDYPFPPHVASRPRDFKLCWFLIHEVGVAAIPPTEFYTDAN  436
               + G+F+L  +                      +L   L+ EVGV   P +       
Sbjct  288  LPSQAGFFLLTGLDPET----------------AKELAQVLLEEVGVYVTPGSSPG----  327

Query  437  AHIAEDYLRFAV-CKNDDVLETAKERL  462
                  +LR  V    ++ LE   E +
Sbjct  328  ---VPGWLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.319    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 584341224


Query= TCONS_00031007

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  123     1e-34


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 123 bits (310),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 8/171 (5%)

Query  21   VLNSPHNPVGKVFSRDELERIGQLCVKHNLIILSDEVYDRLYY---VPFTRIATLSPELW  77
            +  SPHNP G V + +ELE++  L  +HN+++L DE Y    +         A L+    
Sbjct  141  LHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLAEGPN  200

Query  78   ERTLTVGSAGKAFYATGWRVGYLIGPEHLIKYVAAAHTRICYSSVSPLQEAAAVAFEQAD  137
               L VGS  KAF   GWRVGY++G   +I  +         S  + LQ AAA A     
Sbjct  201  --LLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARPFYSS--THLQAAAAAALSDPL  256

Query  138  KVGFW-DQSRREMKQKMERFCEVFDELNIPYSDPEGGYFVLANMSSVKLPE  187
             V    ++ R+ +K++ +   +      +     + G+F+L  +      E
Sbjct  257  LVASELEEMRQRIKERRDYLRDGLQAAGLSVLPSQAGFFLLTGLDPETAKE  307



Lambda      K        H        a         alpha
   0.321    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00035328

Length=391
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  210     2e-65


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 210 bits (536),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 87/354 (25%), Positives = 145/354 (41%), Gaps = 42/354 (12%)

Query  34   YNAIQGRPRLKKAIADAYSSSFGRTINPDTEVSITTGANEGMLSAFMGFIEPGDEVIIFE  93
            Y    G P L++A+A     S    ++ +  V   +GA   + +       PGD +++  
Sbjct  35   YGPTDGHPELREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLLANPGDAILVPA  94

Query  94   PFFDQYISNIEMPGGTIRYVPLHPPKDGATRTSPASEWTIDFEELEKTINSKTKMIVLNS  153
            P +  YI    + GG +   PL+   D          + +DF+ LE  +  K K+++  S
Sbjct  95   PTYASYIRIARLAGGEVVRYPLYDSND----------FHLDFDALEAALKEKPKVVLHTS  144

Query  154  PHNPVGKVFSRDELERIGQLCVKHNLIILSDEVYDRLYY---VPFTRIATLSPELWERTL  210
            PHNP G V + +ELE++  L  +HN+++L DE Y    +         A L+       L
Sbjct  145  PHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLAEGPN--LL  202

Query  211  TVGSAGKAFYATGWRVGYLIGPEHLIKYVAAAHTRICYSSVSPLQEAAAVAFEQADKVGF  270
             VGS  KAF   GWRVGY++G   +I  +         S  + LQ AAA A      V  
Sbjct  203  VVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARPFYSS--THLQAAAAAALSDPLLVAS  260

Query  271  W-DQSRREMKQKMERFCEVFDELNIPYSDPEGGYFVLANMSSVKLPEDYPFPPHVASRPR  329
              ++ R+ +K++ +   +      +     + G+F+L  +                    
Sbjct  261  ELEEMRQRIKERRDYLRDGLQAAGLSVLPSQAGFFLLTGLDPET----------------  304

Query  330  DFKLCWFLIHEVGVAAIPPTEFYTDANAHIAEDYLRFAV-CKNDDVLETAKERL  382
              +L   L+ EVGV   P +             +LR  V    ++ LE   E +
Sbjct  305  AKELAQVLLEEVGVYVTPGSSPG-------VPGWLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.320    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0718    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00031008

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  120     1e-32


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 120 bits (303),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 58/233 (25%), Positives = 93/233 (40%), Gaps = 32/233 (14%)

Query  42   HNPVGKVFSRDELERIGQLCVKHNLIILSDEVYDRLYY---VPFTRIATLSPELWERTLT  98
            HNP G V + +ELE++  L  +HN+++L DE Y    +         A L+       L 
Sbjct  146  HNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLAEGPN--LLV  203

Query  99   VGSAGKAFYATGWRVGYLIGPEHLIKYVAAAHTRICYSSVSPLQEAAAVAFEQADKVGFW  158
            VGS  KAF   GWRVGY++G   +I  +         S  + LQ AAA A      V   
Sbjct  204  VGSFSKAFGLAGWRVGYILGNAAVISQLRKLARPFYSS--THLQAAAAAALSDPLLVASE  261

Query  159  -DQSRREMKQKMERFCEVFDELNIPYSDPEGGYFVLANMSSVKLPEDYPFPPHVASRPRD  217
             ++ R+ +K++ +   +      +     + G+F+L  +                     
Sbjct  262  LEEMRQRIKERRDYLRDGLQAAGLSVLPSQAGFFLLTGLDPET----------------A  305

Query  218  FKLCWFLIHEVGVAAIPPTEFYTDANAHIAEDYLRFAV-CKNDDVLETAKERL  269
             +L   L+ EVGV   P +             +LR  V    ++ LE   E +
Sbjct  306  KELAQVLLEEVGVYVTPGSSPG-------VPGWLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.321    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00031009

Length=163
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  147     4e-44


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 147 bits (372),  Expect = 4e-44, Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 15/164 (9%)

Query  2    LSAFMGFIEPGDEVIIFEPFFDQYISNIEMPGGTIRYVPLHPPKDGATRTSPASEWTIDF  61
             +       PGD +++  P +  YI    + GG +   PL+   D          + +DF
Sbjct  77   EALIFLLANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSND----------FHLDF  126

Query  62   EELEKTINSKTKMIVLNSPHNPVGKVFSRDELERIGQLCVKHNLIILSDEVYDRLYY---  118
            + LE  +  K K+++  SPHNP G V + +ELE++  L  +HN+++L DE Y    +   
Sbjct  127  DALEAALKEKPKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSP  186

Query  119  VPFTRIATLSPELWERTLTVGSAGKAFYATGWRVGYLIGPEHLI  162
                  A L+       L VGS  KAF   GWRVGY++G   +I
Sbjct  187  DAVATRALLAEGPN--LLVVGSFSKAFGLAGWRVGYILGNAAVI  228



Lambda      K        H        a         alpha
   0.321    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00035329

Length=262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  128     1e-35


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 128 bits (323),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 96/238 (40%), Gaps = 32/238 (13%)

Query  21   VLNSPHNPVGKVFSRDELERIGQLCVKHNLIILSDEVYDRLYY---VPFTRIATLSPELW  77
            +  SPHNP G V + +ELE++  L  +HN+++L DE Y    +         A L+    
Sbjct  141  LHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLAEGPN  200

Query  78   ERTLTVGSAGKAFYATGWRVGYLIGPEHLIKYVAAAHTRICYSSVSPLQEAAAVAFEQAD  137
               L VGS  KAF   GWRVGY++G   +I  +         S  + LQ AAA A     
Sbjct  201  --LLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARPFYSS--THLQAAAAAALSDPL  256

Query  138  KVGFW-DQSRREMKQKMERFCEVFDELNIPYSDPEGGYFVLANMSSVKLPEDYPFPPHVA  196
             V    ++ R+ +K++ +   +      +     + G+F+L  +                
Sbjct  257  LVASELEEMRQRIKERRDYLRDGLQAAGLSVLPSQAGFFLLTGLDPET------------  304

Query  197  SRPRDFKLCWFLIHEVGVAAIPPTEFYTDANAHIAEDYLRFAV-CKNDDVLETAKERL  253
                  +L   L+ EVGV   P +             +LR  V    ++ LE   E +
Sbjct  305  ----AKELAQVLLEEVGVYVTPGSSPG-------VPGWLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.322    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00031010

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  217     2e-68


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 217 bits (556),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 81/300 (27%), Positives = 133/300 (44%), Gaps = 18/300 (6%)

Query  81   PIVNMGQGFFGYNPPQFALDAAKEALDRVECNQYSPTKGRPRLKKAIADAYSSSFGRTIN  140
              +N+G   +  +       A K+AL     N Y PT G P L++A+A     S    ++
Sbjct  2    DKINLGSNEYLGDTLPAVAKAEKDALAGGTRNLYGPTDGHPELREALAKFLGRSPVLKLD  61

Query  141  PDTEVSITTGANEGMLSAFMGFIEPGDEVIIFEPFFDQYISNIEMPGGTIRYVPLHPPKD  200
             +  V   +GA   + +       PGD +++  P +  YI    + GG +   PL+   D
Sbjct  62   REAAVVFGSGAGANIEALIFLLANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSND  121

Query  201  GATRTSPASEWTIDFEELEKTINSKTKMIVLNSPHNPVGKVFSRDELERIGQLCVKHNLI  260
                      + +DF+ LE  +  K K+++  SPHNP G V + +ELE++  L  +HN++
Sbjct  122  ----------FHLDFDALEAALKEKPKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNIL  171

Query  261  ILSDEVYDRLYY---VPFTRIATLSPELWERTLTVGSAGKAFYATGWRVGYLIGPEHLIK  317
            +L DE Y    +         A L+       L VGS  KAF   GWRVGY++G   +I 
Sbjct  172  LLVDEAYAGFVFGSPDAVATRALLAEGPN--LLVVGSFSKAFGLAGWRVGYILGNAAVIS  229

Query  318  YVAAAHTRICYSSVSPLQEAAAVAFEQADKVGFW-DQSRREMKQKMERFCEVFDELNIPV  376
             +         S  + LQ AAA A      V    ++ R+ +K++ +   +      + V
Sbjct  230  QLRKLARPFYSS--THLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLQAAGLSV  287



Lambda      K        H        a         alpha
   0.319    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00031011

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  212     1e-65


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 212 bits (543),  Expect = 1e-65, Method: Composition-based stats.
 Identities = 94/406 (23%), Positives = 158/406 (39%), Gaps = 61/406 (15%)

Query  39   PIVNMGQGFFGYNPPQFALDAAKEALDRVECNQYSPTKGRPRLKKAIADAYSSSFGRTIN  98
              +N+G   +  +       A K+AL     N Y PT G P L++A+A     S    ++
Sbjct  2    DKINLGSNEYLGDTLPAVAKAEKDALAGGTRNLYGPTDGHPELREALAKFLGRSPVLKLD  61

Query  99   PDTEVSITTGANEGMLSAFMGFIEPGDEVIIFEPFFDQYISNIEMPGGTIRYVPLHPPKD  158
             +  V   +GA   + +       PGD +++  P +  YI    + GG +   PL+   D
Sbjct  62   REAAVVFGSGAGANIEALIFLLANPGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSND  121

Query  159  GATRTSPASEWTIDFEELEKTINSKTKMIVRSFELTVSEPGQLHLYGANNSIRHNPVGKV  218
                      + +DF+ LE  +  K K+++                   +   HNP G V
Sbjct  122  ----------FHLDFDALEAALKEKPKVVL-----------------HTSP--HNPTGTV  152

Query  219  FSRDELERIGQLCVKHNLIILSDEVYDRLYY---VPFTRIATLSPELWERTLTVGSAGKA  275
             + +ELE++  L  +HN+++L DE Y    +         A L+       L VGS  KA
Sbjct  153  ATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLAEGPN--LLVVGSFSKA  210

Query  276  FYATGWRVGYLIGPEHLIKYVAAAHTRICYSSVSPLQEAAAVAFEQADKVGFW-DQSRRE  334
            F   GWRVGY++G   +I  +         S  + LQ AAA A      V    ++ R+ 
Sbjct  211  FGLAGWRVGYILGNAAVISQLRKLARPFYSS--THLQAAAAAALSDPLLVASELEEMRQR  268

Query  335  MKQKMERFCEVFDELNIPYSDPEGGYFVLANMSSVKLPEDYPFPPHVASRPRDFKLCWFL  394
            +K++ +   +      +     + G+F+L  +                      +L   L
Sbjct  269  IKERRDYLRDGLQAAGLSVLPSQAGFFLLTGLDPET----------------AKELAQVL  312

Query  395  IHEVGVAAIPPTEFYTDANAHIAEDYLRFAV-CKNDDVLETAKERL  439
            + EVGV   P +             +LR  V    ++ LE   E +
Sbjct  313  LEEVGVYVTPGSSPG-------VPGWLRITVAGGTEEELEELLEAI  351



Lambda      K        H        a         alpha
   0.319    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00031012

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00031013

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00035330

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466407 pfam20256, MoCoBD_2, Molybdopterin cofactor-binding do...  329     3e-111
CDD:460671 pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain...  196     2e-60 


>CDD:466407 pfam20256, MoCoBD_2, Molybdopterin cofactor-binding domain.  

Length=282

 Score = 329 bits (846),  Expect = 3e-111, Method: Composition-based stats.
 Identities = 125/289 (43%), Positives = 153/289 (53%), Gaps = 28/289 (10%)

Query  145  QVLEESAYAERRKAVEEYNKKHKWSKRGMAIIPTKFGISFTALFLNQAGALVHIYHDGSV  204
            + LE S Y ERR    E+N+ ++  KRG+ I P   G       LNQAGALV +  DGSV
Sbjct  1    KALELSDYDERRAEQAEFNRGNR--KRGIGIAPYVEGSGLGPGALNQAGALVRLNPDGSV  58

Query  205  LVAHGGVEMGQGLHTKMTMIAAEALGVPQSDVFISETATNTVANTSSTAASASSDLNGYA  264
             V  GG EMGQGL TK+  IAAEALG+P  DV + E  T+TV N   T AS S+D+ G A
Sbjct  59   TVYTGGTEMGQGLETKLAQIAAEALGIPPEDVRVVEGDTDTVPNGGGTGASRSTDVGGNA  118

Query  265  IFNACEQLNERLRPYREKMPGA---------------------SMKELAHAAYFDRVNLS  303
            +  A E+L ERL      +  A                     +  ELA AAY + V LS
Sbjct  119  VLLAAEKLRERLLKIAAHLLEASPEDLEFEDGKVYVKGDPRSVTFAELAAAAYGEGVGLS  178

Query  304  AQGFYRTPDIGYVWGENKGQMFFYFTQGVAAAEVEIDTLTGDWTPLRADIKMDVGRTINP  363
            A GFY  PD        +G  F Y+  G  AAEVE+D  TG+   LR     D GR INP
Sbjct  179  ATGFYTPPD----DETGQGPPFAYYPYGAHAAEVEVDPETGEVRVLRYVAVHDCGRVINP  234

Query  364  SIDYGQIEGAFIQGQGLFTTEESLWHRASGQIFTKGPGNYKIPGFRDIP  412
            +I  GQIEG F+QG GL   EE ++    GQ+ T    +YKIP   DIP
Sbjct  235  AIVEGQIEGGFVQGIGLALMEELVYD-EDGQLLTASLMDYKIPTAADIP  282


>CDD:460671 pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde 
dehydrogenase.  
Length=244

 Score = 196 bits (502),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 67/121 (55%), Positives = 88/121 (73%), Gaps = 0/121 (0%)

Query  1    MLNRDEDIVTSGQRHPFLCHWKVGVTKEGKLLALDADVYANGGHTQDLSGAVVERSLSHI  60
            +L+R+ED++ +G RHPFL  +KVG  K+GK+LALD D+YA+GG   DLS AV ER+LSH+
Sbjct  124  VLDREEDMLATGHRHPFLIKYKVGADKDGKILALDVDLYADGGAYADLSPAVPERALSHL  183

Query  61   DGVYNIPNVHVRGRVCKTNTVSNTAFRGFGGPQGMFFAESFMEEIADHLDIPVEQFRQQN  120
            DG Y IPNV V GR   TNT  N AFRGFG PQGMF  E  M+E+A+ L +   + R++N
Sbjct  184  DGPYKIPNVRVDGRAVYTNTPPNGAFRGFGRPQGMFALERLMDELAEELGMDPLELRRRN  243

Query  121  M  121
            +
Sbjct  244  L  244



Lambda      K        H        a         alpha
   0.319    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00035331

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00031015

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00031016

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460007 pfam00941, FAD_binding_5, FAD binding domain in molybd...  188     2e-57
CDD:426197 pfam01315, Ald_Xan_dh_C, Aldehyde oxidase and xanthine...  137     2e-39
CDD:460921 pfam03450, CO_deh_flav_C, CO dehydrogenase flavoprotei...  121     2e-33
CDD:460671 pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain...  102     3e-25


>CDD:460007 pfam00941, FAD_binding_5, FAD binding domain in molybdopterin 
dehydrogenase.  
Length=170

 Score = 188 bits (480),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 94/174 (54%), Gaps = 10/174 (6%)

Query  63   KWYRPVTLQQLLEIKNAHPASKIIGGSTETQIEVKFKAMRYNASVYVGDIPELRQYSLRD  122
             +YRP +L + LE+  A P +K++ G T     +K +  R +  + +  IPELR     D
Sbjct  4    GYYRPASLAEALELLAAGPDAKLVAGGTSLGPLMKLRLARPDHLIDINGIPELRGIEETD  63

Query  123  DHVELGANVSLTDLESMCDEAVEKYGPVQSQPFKAIKKQLRYFAGRQIRNVASPAGNLAT  182
              +E+GA V+L+++    +  + +  P       A+ + LR  A  QIRNV +  GN+A 
Sbjct  64   GGLEIGAAVTLSEIA---EPLLREAYP-------ALSEALRKIASPQIRNVGTIGGNIAN  113

Query  183  ASPISDLNPVFVATNTLLIAKSLRGDIEIPMDQFFKGYRLTALPEDAVIVSLRI  236
            ASPISDL P  +A +  +  +S  G+  +P++ FF GY  TAL    +I ++ I
Sbjct  114  ASPISDLPPALLALDAKVELRSGEGERTVPLEDFFLGYGKTALEPGELITAVII  167


>CDD:426197 pfam01315, Ald_Xan_dh_C, Aldehyde oxidase and xanthine dehydrogenase, 
a/b hammerhead domain.  
Length=107

 Score = 137 bits (348),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 55/110 (50%), Positives = 68/110 (62%), Gaps = 3/110 (3%)

Query  406  TGEAQYTDDIPVQKNELYGCLVLSTKAHAKIVSVDTTAALNIPGVYDYVDHRDLPNPKAN  465
            TGEA Y DDIP   N  YG  V ST AHAKIVS+DT+AAL +PGV   +  +DLP    N
Sbjct  1    TGEAVYVDDIPAPGNL-YGAFVRSTIAHAKIVSIDTSAALALPGVVAVITAKDLPGGNYN  59

Query  466  WWGAPKCDEVFFAVDEVTTAGQPIGMILASSAKIAEEASRAVKIEYEELP  515
                P  D + FA D+V   GQPI  ++A   + A  A++ VK+EYEELP
Sbjct  60   IGPIPL-DPL-FATDKVRHVGQPIAAVVADDEETARRAAKLVKVEYEELP  107


>CDD:460921 pfam03450, CO_deh_flav_C, CO dehydrogenase flavoprotein C-terminal 
domain.  
Length=102

 Score = 121 bits (306),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 47/105 (45%), Positives = 58/105 (55%), Gaps = 3/105 (3%)

Query  247  RAYKQSKRKDDDIAIVNAALRVSLSPSNDVTSVNLVFGGLAPMTVSARNAESFLLGKKFT  306
             AYKQ+KR+DDDIAIVNAA RV L     V    + FGG+AP  + A  AE+ L+GK + 
Sbjct  1    AAYKQAKRRDDDIAIVNAAFRVRLD-GGTVEDARIAFGGVAPTPIRATEAEAALIGKPWD  59

Query  307  NPATLEGTMSALERDFDLKFSVPGGMATYRRSLALGFFYRFYHDV  351
               TLE   + L  D     S P G A YRR LA    +RF  + 
Sbjct  60   -EETLEAAAALLLEDLSPL-SDPRGSAEYRRHLARSLLFRFLLEA  102


>CDD:460671 pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde 
dehydrogenase.  
Length=244

 Score = 102 bits (258),  Expect = 3e-25, Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 39/63 (62%), Gaps = 0/63 (0%)

Query  532  HFRFIKCGDTDKAFEEADHVFHGVSRMGGQEHFYLETQACVAIPKPEDGEMEVWSSTQNP  591
                 + GD + AF EADHV  G  R G QEHFY+ET+A +A+P  EDG + V+SSTQ P
Sbjct  9    VAFHREKGDVEAAFAEADHVVEGEYRTGRQEHFYMETRAALAVPDDEDGRLTVYSSTQGP  68

Query  592  TET  594
               
Sbjct  69   HLV  71



Lambda      K        H        a         alpha
   0.316    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 750202856


Query= TCONS_00035332

Length=1425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  316     2e-99
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 231     5e-67
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  70.8    8e-14
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  68.5    4e-12


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 316 bits (813),  Expect = 2e-99, Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 137/258 (53%), Gaps = 9/258 (3%)

Query  1007  LTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESW---T  1063
             LTGATGFLG  +L  LL     + ++  LVRAK  E AL+R+R     Y  +D       
Sbjct  1     LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  1064  SRLQCVCGDLGKPRFGLSEALWNDLTERVDAVIHNGALVHWVYPYSTLKPANVLGTIDAL  1123
              R+  V GDL +P  GLSE  + +L E VD +IH+ A V++V PY   +  NVLGT + L
Sbjct  61    ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  1124  KLCASGKPKQ-FSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGTGYGQ  1182
             +L   GK  + F  VS T+ ++ +   L  E+    G   +  D+D      GL  GY Q
Sbjct  121   RLAKQGKQLKPFHHVS-TAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQ  179

Query  1183  SKWAGEYLVREAGRRGLKGTIVRPGYVLGDSKTGTTNTDDFLIRMMKGCIQLSARPNIHN  1242
             +KW  E LVREA RRGL   I RP  + G+ KTG  N  DF  R + G I     P+I  
Sbjct  180   TKWLAEQLVREAARRGLPVVIYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSILG  239

Query  1243  T----VNMVPVDHVARVV  1256
                  +++VPVD+VA  +
Sbjct  240   DPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 231 bits (590),  Expect = 5e-67, Method: Composition-based stats.
 Identities = 116/477 (24%), Positives = 186/477 (39%), Gaps = 69/477 (14%)

Query  265  FAQNAEKHPDKLCVVETKSEQSPHREFTYRQINEASNILGHHLVRAGIERGDVVMVYAYR  324
              + A + PDK  +          R  TYR+++E +N L   L   G+ +GD V +    
Sbjct  1    LERQAARTPDKTALEV-----GEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPN  55

Query  325  GVDLVVAVMGILKAGATFSVIDPAYPPERQCIYLDVARPRALINIAKATKEAGELTQLVR  384
              + VVA +  LKAGA +  ++P  P E     L+ +  + LI     T +A +L +L  
Sbjct  56   SPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI-----TDDALKLEEL--  108

Query  385  SFIDENLELRTEIPALALQDDGTLVGGSVEGQDVLANQVSLKSTPVGVVVGPDSTPTLSF  444
                E L     +  + + D   ++      ++     V     P      PD    + +
Sbjct  109  ---LEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIY  162

Query  445  TSGSEGRPKGVRGRHFSLAY----YFPWMSETFKLTPNDRFTMLSGIAHD-PIQRDIFTP  499
            TSG+ G+PKGV   H +L              F L P+DR      + HD  +   +  P
Sbjct  163  TSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGP  222

Query  500  LFLGAQLLVPAREDIQNEK-LAEWMREYSATVTHLTPAMGQILV---GGASAQFPALHHA  555
            L  GA +++P      +   L E +  Y  TV +  P +  +L+       A   +L   
Sbjct  223  LLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLV  282

Query  556  FFVGDILIKRDCRSLQALAPNVNIVNMYGTTETQRAVSYYEIPSYSSQEGFLDTMKDVIP  615
               G  L     R  + L     +VN YG TET   V    +P         + ++ +  
Sbjct  283  LSGGAPLPPELARRFRELFGGA-LVNGYGLTETT-GVVTTPLP-------LDEDLRSLGS  333

Query  616  AGRGMVDVQMLVVNRFDPSRICAIGEVGEIYVRAGGLAEGYLSNEELNKKKFLTNWFVDP  675
             GR +   ++ +V+  +       GE GE+ VR  G+ +GYL++ EL  + F        
Sbjct  334  VGRPLPGTEVKIVDD-ETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDE------  386

Query  676  QKWVEKDKAESQGGNEPWRQFYVGPRDRLYRSGDLGRYTPSGDVECSGRADDQVKIR  732
                                      D  YR+GDLGR    G +E  GR  DQ+K+ 
Sbjct  387  --------------------------DGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 70.8 bits (174),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 85/214 (40%), Gaps = 47/214 (22%)

Query  1005  VFLTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESWTS  1064
             + +TGATGF+G+H++R LL +      V+ L R  S         +   A   + E    
Sbjct  1     ILVTGATGFIGSHLVRRLLEKG---YEVIGLDRLTSAS------NTARLADLRFVE----  47

Query  1065  RLQCVCGDLGKPRFGLSEALWNDLTE--RVDAVIHNGALVHW----VYPYSTLKPANVLG  1118
                   GDL              L    R DAVIH  A+         P   ++ ANVLG
Sbjct  48    ------GDL------TDRDALEKLLADVRPDAVIHLAAVGGVGASIEDPEDFIE-ANVLG  94

Query  1119  TIDALKLCASGKPKQFSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGT  1178
             T++ L+       K+F F SS+ V                 GA I +++      +   +
Sbjct  95    TLNLLEAARKAGVKRFLFASSSEV--------------YGDGAEIPQEETTLTGPLAPNS  140

Query  1179  GYGQSKWAGEYLVREAGRR-GLKGTIVRPGYVLG  1211
              Y  +K AGE+LV       GL+  I+R   V G
Sbjct  141   PYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 68.5 bits (168),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 43/272 (16%)

Query  8    LQDRLERWAQRL-QNLTVSPLTRDYPENQKADLKRAIEAFESLKLPRDVHTGLQKLSGPS  66
             Q     W ++L   L V  L +DY        K    +F    L  D    L+KL+   
Sbjct  191  YQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSF---TLDEDTEELLRKLAKAH  247

Query  67   SGFIT--FLAAFVVLVARLTGDEDIAVATSSAEDGRP----------FV----LRVSIDQ  110
               +    LAA+ +L++R TG +DI V T  +  GRP          FV    LR+    
Sbjct  248  GTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGS--GRPSPDIERMVGMFVNTLPLRIDPKG  305

Query  111  SETFQQLYSKVENAFNQG-AADIVPLGSLRSYIQEKTKSERAP---ILFRFAAYDAPASS  166
             +TF +L  +V+            P G L + ++      R P    +F F  Y      
Sbjct  306  GKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSFQNYLG----  361

Query  167  QEYPANTFETTDLVVNVANANGSTSETEL--GAY-----------YNQRLFSSARIAIIL  213
            Q+     F+ ++L ++V++     ++ +L   A            YN  LF    I    
Sbjct  362  QDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYNTSLFDEETIERFA  421

Query  214  KQLAQIVQNASNNPGEAIGRIDFMTDDQRSLL  245
            +   ++++ A  +P + +  +D ++D ++  L
Sbjct  422  EHFKELLEQAIAHPSQPLSELDLLSDAEKQKL  453



Lambda      K        H        a         alpha
   0.318    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1826748200


Query= TCONS_00035333

Length=1425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  316     2e-99
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 231     5e-67
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  70.8    8e-14
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  68.5    4e-12


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 316 bits (813),  Expect = 2e-99, Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 137/258 (53%), Gaps = 9/258 (3%)

Query  1007  LTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESW---T  1063
             LTGATGFLG  +L  LL     + ++  LVRAK  E AL+R+R     Y  +D       
Sbjct  1     LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  1064  SRLQCVCGDLGKPRFGLSEALWNDLTERVDAVIHNGALVHWVYPYSTLKPANVLGTIDAL  1123
              R+  V GDL +P  GLSE  + +L E VD +IH+ A V++V PY   +  NVLGT + L
Sbjct  61    ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  1124  KLCASGKPKQ-FSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGTGYGQ  1182
             +L   GK  + F  VS T+ ++ +   L  E+    G   +  D+D      GL  GY Q
Sbjct  121   RLAKQGKQLKPFHHVS-TAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQ  179

Query  1183  SKWAGEYLVREAGRRGLKGTIVRPGYVLGDSKTGTTNTDDFLIRMMKGCIQLSARPNIHN  1242
             +KW  E LVREA RRGL   I RP  + G+ KTG  N  DF  R + G I     P+I  
Sbjct  180   TKWLAEQLVREAARRGLPVVIYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSILG  239

Query  1243  T----VNMVPVDHVARVV  1256
                  +++VPVD+VA  +
Sbjct  240   DPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 231 bits (590),  Expect = 5e-67, Method: Composition-based stats.
 Identities = 116/477 (24%), Positives = 186/477 (39%), Gaps = 69/477 (14%)

Query  265  FAQNAEKHPDKLCVVETKSEQSPHREFTYRQINEASNILGHHLVRAGIERGDVVMVYAYR  324
              + A + PDK  +          R  TYR+++E +N L   L   G+ +GD V +    
Sbjct  1    LERQAARTPDKTALEV-----GEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPN  55

Query  325  GVDLVVAVMGILKAGATFSVIDPAYPPERQCIYLDVARPRALINIAKATKEAGELTQLVR  384
              + VVA +  LKAGA +  ++P  P E     L+ +  + LI     T +A +L +L  
Sbjct  56   SPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI-----TDDALKLEEL--  108

Query  385  SFIDENLELRTEIPALALQDDGTLVGGSVEGQDVLANQVSLKSTPVGVVVGPDSTPTLSF  444
                E L     +  + + D   ++      ++     V     P      PD    + +
Sbjct  109  ---LEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIY  162

Query  445  TSGSEGRPKGVRGRHFSLAY----YFPWMSETFKLTPNDRFTMLSGIAHD-PIQRDIFTP  499
            TSG+ G+PKGV   H +L              F L P+DR      + HD  +   +  P
Sbjct  163  TSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGP  222

Query  500  LFLGAQLLVPAREDIQNEK-LAEWMREYSATVTHLTPAMGQILV---GGASAQFPALHHA  555
            L  GA +++P      +   L E +  Y  TV +  P +  +L+       A   +L   
Sbjct  223  LLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLV  282

Query  556  FFVGDILIKRDCRSLQALAPNVNIVNMYGTTETQRAVSYYEIPSYSSQEGFLDTMKDVIP  615
               G  L     R  + L     +VN YG TET   V    +P         + ++ +  
Sbjct  283  LSGGAPLPPELARRFRELFGGA-LVNGYGLTETT-GVVTTPLP-------LDEDLRSLGS  333

Query  616  AGRGMVDVQMLVVNRFDPSRICAIGEVGEIYVRAGGLAEGYLSNEELNKKKFLTNWFVDP  675
             GR +   ++ +V+  +       GE GE+ VR  G+ +GYL++ EL  + F        
Sbjct  334  VGRPLPGTEVKIVDD-ETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDE------  386

Query  676  QKWVEKDKAESQGGNEPWRQFYVGPRDRLYRSGDLGRYTPSGDVECSGRADDQVKIR  732
                                      D  YR+GDLGR    G +E  GR  DQ+K+ 
Sbjct  387  --------------------------DGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 70.8 bits (174),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 85/214 (40%), Gaps = 47/214 (22%)

Query  1005  VFLTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESWTS  1064
             + +TGATGF+G+H++R LL +      V+ L R  S         +   A   + E    
Sbjct  1     ILVTGATGFIGSHLVRRLLEKG---YEVIGLDRLTSAS------NTARLADLRFVE----  47

Query  1065  RLQCVCGDLGKPRFGLSEALWNDLTE--RVDAVIHNGALVHW----VYPYSTLKPANVLG  1118
                   GDL              L    R DAVIH  A+         P   ++ ANVLG
Sbjct  48    ------GDL------TDRDALEKLLADVRPDAVIHLAAVGGVGASIEDPEDFIE-ANVLG  94

Query  1119  TIDALKLCASGKPKQFSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGT  1178
             T++ L+       K+F F SS+ V                 GA I +++      +   +
Sbjct  95    TLNLLEAARKAGVKRFLFASSSEV--------------YGDGAEIPQEETTLTGPLAPNS  140

Query  1179  GYGQSKWAGEYLVREAGRR-GLKGTIVRPGYVLG  1211
              Y  +K AGE+LV       GL+  I+R   V G
Sbjct  141   PYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 68.5 bits (168),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 43/272 (16%)

Query  8    LQDRLERWAQRL-QNLTVSPLTRDYPENQKADLKRAIEAFESLKLPRDVHTGLQKLSGPS  66
             Q     W ++L   L V  L +DY        K    +F    L  D    L+KL+   
Sbjct  191  YQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSF---TLDEDTEELLRKLAKAH  247

Query  67   SGFIT--FLAAFVVLVARLTGDEDIAVATSSAEDGRP----------FV----LRVSIDQ  110
               +    LAA+ +L++R TG +DI V T  +  GRP          FV    LR+    
Sbjct  248  GTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGS--GRPSPDIERMVGMFVNTLPLRIDPKG  305

Query  111  SETFQQLYSKVENAFNQG-AADIVPLGSLRSYIQEKTKSERAP---ILFRFAAYDAPASS  166
             +TF +L  +V+            P G L + ++      R P    +F F  Y      
Sbjct  306  GKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSFQNYLG----  361

Query  167  QEYPANTFETTDLVVNVANANGSTSETEL--GAY-----------YNQRLFSSARIAIIL  213
            Q+     F+ ++L ++V++     ++ +L   A            YN  LF    I    
Sbjct  362  QDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYNTSLFDEETIERFA  421

Query  214  KQLAQIVQNASNNPGEAIGRIDFMTDDQRSLL  245
            +   ++++ A  +P + +  +D ++D ++  L
Sbjct  422  EHFKELLEQAIAHPSQPLSELDLLSDAEKQKL  453



Lambda      K        H        a         alpha
   0.318    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1826748200


Query= TCONS_00031019

Length=1425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  316     2e-99
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 231     5e-67
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  70.8    8e-14
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  68.5    4e-12


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 316 bits (813),  Expect = 2e-99, Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 137/258 (53%), Gaps = 9/258 (3%)

Query  1007  LTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESW---T  1063
             LTGATGFLG  +L  LL     + ++  LVRAK  E AL+R+R     Y  +D       
Sbjct  1     LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  1064  SRLQCVCGDLGKPRFGLSEALWNDLTERVDAVIHNGALVHWVYPYSTLKPANVLGTIDAL  1123
              R+  V GDL +P  GLSE  + +L E VD +IH+ A V++V PY   +  NVLGT + L
Sbjct  61    ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  1124  KLCASGKPKQ-FSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGTGYGQ  1182
             +L   GK  + F  VS T+ ++ +   L  E+    G   +  D+D      GL  GY Q
Sbjct  121   RLAKQGKQLKPFHHVS-TAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQ  179

Query  1183  SKWAGEYLVREAGRRGLKGTIVRPGYVLGDSKTGTTNTDDFLIRMMKGCIQLSARPNIHN  1242
             +KW  E LVREA RRGL   I RP  + G+ KTG  N  DF  R + G I     P+I  
Sbjct  180   TKWLAEQLVREAARRGLPVVIYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSILG  239

Query  1243  T----VNMVPVDHVARVV  1256
                  +++VPVD+VA  +
Sbjct  240   DPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 231 bits (590),  Expect = 5e-67, Method: Composition-based stats.
 Identities = 116/477 (24%), Positives = 186/477 (39%), Gaps = 69/477 (14%)

Query  265  FAQNAEKHPDKLCVVETKSEQSPHREFTYRQINEASNILGHHLVRAGIERGDVVMVYAYR  324
              + A + PDK  +          R  TYR+++E +N L   L   G+ +GD V +    
Sbjct  1    LERQAARTPDKTALEV-----GEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPN  55

Query  325  GVDLVVAVMGILKAGATFSVIDPAYPPERQCIYLDVARPRALINIAKATKEAGELTQLVR  384
              + VVA +  LKAGA +  ++P  P E     L+ +  + LI     T +A +L +L  
Sbjct  56   SPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI-----TDDALKLEEL--  108

Query  385  SFIDENLELRTEIPALALQDDGTLVGGSVEGQDVLANQVSLKSTPVGVVVGPDSTPTLSF  444
                E L     +  + + D   ++      ++     V     P      PD    + +
Sbjct  109  ---LEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIY  162

Query  445  TSGSEGRPKGVRGRHFSLAY----YFPWMSETFKLTPNDRFTMLSGIAHD-PIQRDIFTP  499
            TSG+ G+PKGV   H +L              F L P+DR      + HD  +   +  P
Sbjct  163  TSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGP  222

Query  500  LFLGAQLLVPAREDIQNEK-LAEWMREYSATVTHLTPAMGQILV---GGASAQFPALHHA  555
            L  GA +++P      +   L E +  Y  TV +  P +  +L+       A   +L   
Sbjct  223  LLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLV  282

Query  556  FFVGDILIKRDCRSLQALAPNVNIVNMYGTTETQRAVSYYEIPSYSSQEGFLDTMKDVIP  615
               G  L     R  + L     +VN YG TET   V    +P         + ++ +  
Sbjct  283  LSGGAPLPPELARRFRELFGGA-LVNGYGLTETT-GVVTTPLP-------LDEDLRSLGS  333

Query  616  AGRGMVDVQMLVVNRFDPSRICAIGEVGEIYVRAGGLAEGYLSNEELNKKKFLTNWFVDP  675
             GR +   ++ +V+  +       GE GE+ VR  G+ +GYL++ EL  + F        
Sbjct  334  VGRPLPGTEVKIVDD-ETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDE------  386

Query  676  QKWVEKDKAESQGGNEPWRQFYVGPRDRLYRSGDLGRYTPSGDVECSGRADDQVKIR  732
                                      D  YR+GDLGR    G +E  GR  DQ+K+ 
Sbjct  387  --------------------------DGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 70.8 bits (174),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 85/214 (40%), Gaps = 47/214 (22%)

Query  1005  VFLTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESWTS  1064
             + +TGATGF+G+H++R LL +      V+ L R  S         +   A   + E    
Sbjct  1     ILVTGATGFIGSHLVRRLLEKG---YEVIGLDRLTSAS------NTARLADLRFVE----  47

Query  1065  RLQCVCGDLGKPRFGLSEALWNDLTE--RVDAVIHNGALVHW----VYPYSTLKPANVLG  1118
                   GDL              L    R DAVIH  A+         P   ++ ANVLG
Sbjct  48    ------GDL------TDRDALEKLLADVRPDAVIHLAAVGGVGASIEDPEDFIE-ANVLG  94

Query  1119  TIDALKLCASGKPKQFSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGT  1178
             T++ L+       K+F F SS+ V                 GA I +++      +   +
Sbjct  95    TLNLLEAARKAGVKRFLFASSSEV--------------YGDGAEIPQEETTLTGPLAPNS  140

Query  1179  GYGQSKWAGEYLVREAGRR-GLKGTIVRPGYVLG  1211
              Y  +K AGE+LV       GL+  I+R   V G
Sbjct  141   PYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 68.5 bits (168),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 43/272 (16%)

Query  8    LQDRLERWAQRL-QNLTVSPLTRDYPENQKADLKRAIEAFESLKLPRDVHTGLQKLSGPS  66
             Q     W ++L   L V  L +DY        K    +F    L  D    L+KL+   
Sbjct  191  YQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSF---TLDEDTEELLRKLAKAH  247

Query  67   SGFIT--FLAAFVVLVARLTGDEDIAVATSSAEDGRP----------FV----LRVSIDQ  110
               +    LAA+ +L++R TG +DI V T  +  GRP          FV    LR+    
Sbjct  248  GTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGS--GRPSPDIERMVGMFVNTLPLRIDPKG  305

Query  111  SETFQQLYSKVENAFNQG-AADIVPLGSLRSYIQEKTKSERAP---ILFRFAAYDAPASS  166
             +TF +L  +V+            P G L + ++      R P    +F F  Y      
Sbjct  306  GKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSFQNYLG----  361

Query  167  QEYPANTFETTDLVVNVANANGSTSETEL--GAY-----------YNQRLFSSARIAIIL  213
            Q+     F+ ++L ++V++     ++ +L   A            YN  LF    I    
Sbjct  362  QDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYNTSLFDEETIERFA  421

Query  214  KQLAQIVQNASNNPGEAIGRIDFMTDDQRSLL  245
            +   ++++ A  +P + +  +D ++D ++  L
Sbjct  422  EHFKELLEQAIAHPSQPLSELDLLSDAEKQKL  453



Lambda      K        H        a         alpha
   0.318    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1826748200


Query= TCONS_00031020

Length=1325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  316     9e-100
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 231     3e-67 
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  70.8    7e-14 
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  68.1    4e-12 


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 316 bits (813),  Expect = 9e-100, Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 137/258 (53%), Gaps = 9/258 (3%)

Query  1007  LTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESW---T  1063
             LTGATGFLG  +L  LL     + ++  LVRAK  E AL+R+R     Y  +D       
Sbjct  1     LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  1064  SRLQCVCGDLGKPRFGLSEALWNDLTERVDAVIHNGALVHWVYPYSTLKPANVLGTIDAL  1123
              R+  V GDL +P  GLSE  + +L E VD +IH+ A V++V PY   +  NVLGT + L
Sbjct  61    ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  1124  KLCASGKPKQ-FSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGTGYGQ  1182
             +L   GK  + F  VS T+ ++ +   L  E+    G   +  D+D      GL  GY Q
Sbjct  121   RLAKQGKQLKPFHHVS-TAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQ  179

Query  1183  SKWAGEYLVREAGRRGLKGTIVRPGYVLGDSKTGTTNTDDFLIRMMKGCIQLSARPNIHN  1242
             +KW  E LVREA RRGL   I RP  + G+ KTG  N  DF  R + G I     P+I  
Sbjct  180   TKWLAEQLVREAARRGLPVVIYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSILG  239

Query  1243  T----VNMVPVDHVARVV  1256
                  +++VPVD+VA  +
Sbjct  240   DPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 231 bits (592),  Expect = 3e-67, Method: Composition-based stats.
 Identities = 116/477 (24%), Positives = 186/477 (39%), Gaps = 69/477 (14%)

Query  265  FAQNAEKHPDKLCVVETKSEQSPHREFTYRQINEASNILGHHLVRAGIERGDVVMVYAYR  324
              + A + PDK  +          R  TYR+++E +N L   L   G+ +GD V +    
Sbjct  1    LERQAARTPDKTALEV-----GEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPN  55

Query  325  GVDLVVAVMGILKAGATFSVIDPAYPPERQCIYLDVARPRALINIAKATKEAGELTQLVR  384
              + VVA +  LKAGA +  ++P  P E     L+ +  + LI     T +A +L +L  
Sbjct  56   SPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI-----TDDALKLEEL--  108

Query  385  SFIDENLELRTEIPALALQDDGTLVGGSVEGQDVLANQVSLKSTPVGVVVGPDSTPTLSF  444
                E L     +  + + D   ++      ++     V     P      PD    + +
Sbjct  109  ---LEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIY  162

Query  445  TSGSEGRPKGVRGRHFSLAY----YFPWMSETFKLTPNDRFTMLSGIAHD-PIQRDIFTP  499
            TSG+ G+PKGV   H +L              F L P+DR      + HD  +   +  P
Sbjct  163  TSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGP  222

Query  500  LFLGAQLLVPAREDIQNEK-LAEWMREYSATVTHLTPAMGQILV---GGASAQFPALHHA  555
            L  GA +++P      +   L E +  Y  TV +  P +  +L+       A   +L   
Sbjct  223  LLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLV  282

Query  556  FFVGDILIKRDCRSLQALAPNVNIVNMYGTTETQRAVSYYEIPSYSSQEGFLDTMKDVIP  615
               G  L     R  + L     +VN YG TET   V    +P         + ++ +  
Sbjct  283  LSGGAPLPPELARRFRELFGGA-LVNGYGLTETT-GVVTTPLP-------LDEDLRSLGS  333

Query  616  AGRGMVDVQMLVVNRFDPSRICAIGEVGEIYVRAGGLAEGYLSNEELNKKKFLTNWFVDP  675
             GR +   ++ +V+  +       GE GE+ VR  G+ +GYL++ EL  + F        
Sbjct  334  VGRPLPGTEVKIVDD-ETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDE------  386

Query  676  QKWVEKDKAESQGGNEPWRQFYVGPRDRLYRSGDLGRYTPSGDVECSGRADDQVKIR  732
                                      D  YR+GDLGR    G +E  GR  DQ+K+ 
Sbjct  387  --------------------------DGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 70.8 bits (174),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 85/214 (40%), Gaps = 47/214 (22%)

Query  1005  VFLTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESWTS  1064
             + +TGATGF+G+H++R LL +      V+ L R  S         +   A   + E    
Sbjct  1     ILVTGATGFIGSHLVRRLLEKG---YEVIGLDRLTSAS------NTARLADLRFVE----  47

Query  1065  RLQCVCGDLGKPRFGLSEALWNDLTE--RVDAVIHNGALVHW----VYPYSTLKPANVLG  1118
                   GDL              L    R DAVIH  A+         P   ++ ANVLG
Sbjct  48    ------GDL------TDRDALEKLLADVRPDAVIHLAAVGGVGASIEDPEDFIE-ANVLG  94

Query  1119  TIDALKLCASGKPKQFSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGT  1178
             T++ L+       K+F F SS+ V                 GA I +++      +   +
Sbjct  95    TLNLLEAARKAGVKRFLFASSSEV--------------YGDGAEIPQEETTLTGPLAPNS  140

Query  1179  GYGQSKWAGEYLVREAGRR-GLKGTIVRPGYVLG  1211
              Y  +K AGE+LV       GL+  I+R   V G
Sbjct  141   PYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 68.1 bits (167),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 43/272 (16%)

Query  8    LQDRLERWAQRL-QNLTVSPLTRDYPENQKADLKRAIEAFESLKLPRDVHTGLQKLSGPS  66
             Q     W ++L   L V  L +DY        K    +F    L  D    L+KL+   
Sbjct  191  YQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSF---TLDEDTEELLRKLAKAH  247

Query  67   SGFIT--FLAAFVVLVARLTGDEDIAVATSSAEDGRP----------FV----LRVSIDQ  110
               +    LAA+ +L++R TG +DI V T  +  GRP          FV    LR+    
Sbjct  248  GTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGS--GRPSPDIERMVGMFVNTLPLRIDPKG  305

Query  111  SETFQQLYSKVENAFNQG-AADIVPLGSLRSYIQEKTKSERAP---ILFRFAAYDAPASS  166
             +TF +L  +V+            P G L + ++      R P    +F F  Y      
Sbjct  306  GKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSFQNYLG----  361

Query  167  QEYPANTFETTDLVVNVANANGSTSETEL--GAY-----------YNQRLFSSARIAIIL  213
            Q+     F+ ++L ++V++     ++ +L   A            YN  LF    I    
Sbjct  362  QDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYNTSLFDEETIERFA  421

Query  214  KQLAQIVQNASNNPGEAIGRIDFMTDDQRSLL  245
            +   ++++ A  +P + +  +D ++D ++  L
Sbjct  422  EHFKELLEQAIAHPSQPLSELDLLSDAEKQKL  453



Lambda      K        H        a         alpha
   0.319    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1689088200


Query= TCONS_00031022

Length=1425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  316     2e-99
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 231     5e-67
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  70.8    8e-14
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  68.5    4e-12


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 316 bits (813),  Expect = 2e-99, Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 137/258 (53%), Gaps = 9/258 (3%)

Query  1007  LTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESW---T  1063
             LTGATGFLG  +L  LL     + ++  LVRAK  E AL+R+R     Y  +D       
Sbjct  1     LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  1064  SRLQCVCGDLGKPRFGLSEALWNDLTERVDAVIHNGALVHWVYPYSTLKPANVLGTIDAL  1123
              R+  V GDL +P  GLSE  + +L E VD +IH+ A V++V PY   +  NVLGT + L
Sbjct  61    ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  1124  KLCASGKPKQ-FSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGTGYGQ  1182
             +L   GK  + F  VS T+ ++ +   L  E+    G   +  D+D      GL  GY Q
Sbjct  121   RLAKQGKQLKPFHHVS-TAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQ  179

Query  1183  SKWAGEYLVREAGRRGLKGTIVRPGYVLGDSKTGTTNTDDFLIRMMKGCIQLSARPNIHN  1242
             +KW  E LVREA RRGL   I RP  + G+ KTG  N  DF  R + G I     P+I  
Sbjct  180   TKWLAEQLVREAARRGLPVVIYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSILG  239

Query  1243  T----VNMVPVDHVARVV  1256
                  +++VPVD+VA  +
Sbjct  240   DPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 231 bits (590),  Expect = 5e-67, Method: Composition-based stats.
 Identities = 116/477 (24%), Positives = 186/477 (39%), Gaps = 69/477 (14%)

Query  265  FAQNAEKHPDKLCVVETKSEQSPHREFTYRQINEASNILGHHLVRAGIERGDVVMVYAYR  324
              + A + PDK  +          R  TYR+++E +N L   L   G+ +GD V +    
Sbjct  1    LERQAARTPDKTALEV-----GEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPN  55

Query  325  GVDLVVAVMGILKAGATFSVIDPAYPPERQCIYLDVARPRALINIAKATKEAGELTQLVR  384
              + VVA +  LKAGA +  ++P  P E     L+ +  + LI     T +A +L +L  
Sbjct  56   SPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI-----TDDALKLEEL--  108

Query  385  SFIDENLELRTEIPALALQDDGTLVGGSVEGQDVLANQVSLKSTPVGVVVGPDSTPTLSF  444
                E L     +  + + D   ++      ++     V     P      PD    + +
Sbjct  109  ---LEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIY  162

Query  445  TSGSEGRPKGVRGRHFSLAY----YFPWMSETFKLTPNDRFTMLSGIAHD-PIQRDIFTP  499
            TSG+ G+PKGV   H +L              F L P+DR      + HD  +   +  P
Sbjct  163  TSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGP  222

Query  500  LFLGAQLLVPAREDIQNEK-LAEWMREYSATVTHLTPAMGQILV---GGASAQFPALHHA  555
            L  GA +++P      +   L E +  Y  TV +  P +  +L+       A   +L   
Sbjct  223  LLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLV  282

Query  556  FFVGDILIKRDCRSLQALAPNVNIVNMYGTTETQRAVSYYEIPSYSSQEGFLDTMKDVIP  615
               G  L     R  + L     +VN YG TET   V    +P         + ++ +  
Sbjct  283  LSGGAPLPPELARRFRELFGGA-LVNGYGLTETT-GVVTTPLP-------LDEDLRSLGS  333

Query  616  AGRGMVDVQMLVVNRFDPSRICAIGEVGEIYVRAGGLAEGYLSNEELNKKKFLTNWFVDP  675
             GR +   ++ +V+  +       GE GE+ VR  G+ +GYL++ EL  + F        
Sbjct  334  VGRPLPGTEVKIVDD-ETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDE------  386

Query  676  QKWVEKDKAESQGGNEPWRQFYVGPRDRLYRSGDLGRYTPSGDVECSGRADDQVKIR  732
                                      D  YR+GDLGR    G +E  GR  DQ+K+ 
Sbjct  387  --------------------------DGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 70.8 bits (174),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 85/214 (40%), Gaps = 47/214 (22%)

Query  1005  VFLTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESWTS  1064
             + +TGATGF+G+H++R LL +      V+ L R  S         +   A   + E    
Sbjct  1     ILVTGATGFIGSHLVRRLLEKG---YEVIGLDRLTSAS------NTARLADLRFVE----  47

Query  1065  RLQCVCGDLGKPRFGLSEALWNDLTE--RVDAVIHNGALVHW----VYPYSTLKPANVLG  1118
                   GDL              L    R DAVIH  A+         P   ++ ANVLG
Sbjct  48    ------GDL------TDRDALEKLLADVRPDAVIHLAAVGGVGASIEDPEDFIE-ANVLG  94

Query  1119  TIDALKLCASGKPKQFSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGT  1178
             T++ L+       K+F F SS+ V                 GA I +++      +   +
Sbjct  95    TLNLLEAARKAGVKRFLFASSSEV--------------YGDGAEIPQEETTLTGPLAPNS  140

Query  1179  GYGQSKWAGEYLVREAGRR-GLKGTIVRPGYVLG  1211
              Y  +K AGE+LV       GL+  I+R   V G
Sbjct  141   PYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 68.5 bits (168),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 43/272 (16%)

Query  8    LQDRLERWAQRL-QNLTVSPLTRDYPENQKADLKRAIEAFESLKLPRDVHTGLQKLSGPS  66
             Q     W ++L   L V  L +DY        K    +F    L  D    L+KL+   
Sbjct  191  YQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSF---TLDEDTEELLRKLAKAH  247

Query  67   SGFIT--FLAAFVVLVARLTGDEDIAVATSSAEDGRP----------FV----LRVSIDQ  110
               +    LAA+ +L++R TG +DI V T  +  GRP          FV    LR+    
Sbjct  248  GTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGS--GRPSPDIERMVGMFVNTLPLRIDPKG  305

Query  111  SETFQQLYSKVENAFNQG-AADIVPLGSLRSYIQEKTKSERAP---ILFRFAAYDAPASS  166
             +TF +L  +V+            P G L + ++      R P    +F F  Y      
Sbjct  306  GKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSFQNYLG----  361

Query  167  QEYPANTFETTDLVVNVANANGSTSETEL--GAY-----------YNQRLFSSARIAIIL  213
            Q+     F+ ++L ++V++     ++ +L   A            YN  LF    I    
Sbjct  362  QDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYNTSLFDEETIERFA  421

Query  214  KQLAQIVQNASNNPGEAIGRIDFMTDDQRSLL  245
            +   ++++ A  +P + +  +D ++D ++  L
Sbjct  422  EHFKELLEQAIAHPSQPLSELDLLSDAEKQKL  453



Lambda      K        H        a         alpha
   0.318    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1826748200


Query= TCONS_00031021

Length=1425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  316     2e-99
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 231     5e-67
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  70.8    8e-14
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  68.5    4e-12


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 316 bits (813),  Expect = 2e-99, Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 137/258 (53%), Gaps = 9/258 (3%)

Query  1007  LTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESW---T  1063
             LTGATGFLG  +L  LL     + ++  LVRAK  E AL+R+R     Y  +D       
Sbjct  1     LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  1064  SRLQCVCGDLGKPRFGLSEALWNDLTERVDAVIHNGALVHWVYPYSTLKPANVLGTIDAL  1123
              R+  V GDL +P  GLSE  + +L E VD +IH+ A V++V PY   +  NVLGT + L
Sbjct  61    ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  1124  KLCASGKPKQ-FSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGTGYGQ  1182
             +L   GK  + F  VS T+ ++ +   L  E+    G   +  D+D      GL  GY Q
Sbjct  121   RLAKQGKQLKPFHHVS-TAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQ  179

Query  1183  SKWAGEYLVREAGRRGLKGTIVRPGYVLGDSKTGTTNTDDFLIRMMKGCIQLSARPNIHN  1242
             +KW  E LVREA RRGL   I RP  + G+ KTG  N  DF  R + G I     P+I  
Sbjct  180   TKWLAEQLVREAARRGLPVVIYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSILG  239

Query  1243  T----VNMVPVDHVARVV  1256
                  +++VPVD+VA  +
Sbjct  240   DPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 231 bits (590),  Expect = 5e-67, Method: Composition-based stats.
 Identities = 116/477 (24%), Positives = 186/477 (39%), Gaps = 69/477 (14%)

Query  265  FAQNAEKHPDKLCVVETKSEQSPHREFTYRQINEASNILGHHLVRAGIERGDVVMVYAYR  324
              + A + PDK  +          R  TYR+++E +N L   L   G+ +GD V +    
Sbjct  1    LERQAARTPDKTALEV-----GEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPN  55

Query  325  GVDLVVAVMGILKAGATFSVIDPAYPPERQCIYLDVARPRALINIAKATKEAGELTQLVR  384
              + VVA +  LKAGA +  ++P  P E     L+ +  + LI     T +A +L +L  
Sbjct  56   SPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI-----TDDALKLEEL--  108

Query  385  SFIDENLELRTEIPALALQDDGTLVGGSVEGQDVLANQVSLKSTPVGVVVGPDSTPTLSF  444
                E L     +  + + D   ++      ++     V     P      PD    + +
Sbjct  109  ---LEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIY  162

Query  445  TSGSEGRPKGVRGRHFSLAY----YFPWMSETFKLTPNDRFTMLSGIAHD-PIQRDIFTP  499
            TSG+ G+PKGV   H +L              F L P+DR      + HD  +   +  P
Sbjct  163  TSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGP  222

Query  500  LFLGAQLLVPAREDIQNEK-LAEWMREYSATVTHLTPAMGQILV---GGASAQFPALHHA  555
            L  GA +++P      +   L E +  Y  TV +  P +  +L+       A   +L   
Sbjct  223  LLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLV  282

Query  556  FFVGDILIKRDCRSLQALAPNVNIVNMYGTTETQRAVSYYEIPSYSSQEGFLDTMKDVIP  615
               G  L     R  + L     +VN YG TET   V    +P         + ++ +  
Sbjct  283  LSGGAPLPPELARRFRELFGGA-LVNGYGLTETT-GVVTTPLP-------LDEDLRSLGS  333

Query  616  AGRGMVDVQMLVVNRFDPSRICAIGEVGEIYVRAGGLAEGYLSNEELNKKKFLTNWFVDP  675
             GR +   ++ +V+  +       GE GE+ VR  G+ +GYL++ EL  + F        
Sbjct  334  VGRPLPGTEVKIVDD-ETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDE------  386

Query  676  QKWVEKDKAESQGGNEPWRQFYVGPRDRLYRSGDLGRYTPSGDVECSGRADDQVKIR  732
                                      D  YR+GDLGR    G +E  GR  DQ+K+ 
Sbjct  387  --------------------------DGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 70.8 bits (174),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 85/214 (40%), Gaps = 47/214 (22%)

Query  1005  VFLTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESWTS  1064
             + +TGATGF+G+H++R LL +      V+ L R  S         +   A   + E    
Sbjct  1     ILVTGATGFIGSHLVRRLLEKG---YEVIGLDRLTSAS------NTARLADLRFVE----  47

Query  1065  RLQCVCGDLGKPRFGLSEALWNDLTE--RVDAVIHNGALVHW----VYPYSTLKPANVLG  1118
                   GDL              L    R DAVIH  A+         P   ++ ANVLG
Sbjct  48    ------GDL------TDRDALEKLLADVRPDAVIHLAAVGGVGASIEDPEDFIE-ANVLG  94

Query  1119  TIDALKLCASGKPKQFSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGT  1178
             T++ L+       K+F F SS+ V                 GA I +++      +   +
Sbjct  95    TLNLLEAARKAGVKRFLFASSSEV--------------YGDGAEIPQEETTLTGPLAPNS  140

Query  1179  GYGQSKWAGEYLVREAGRR-GLKGTIVRPGYVLG  1211
              Y  +K AGE+LV       GL+  I+R   V G
Sbjct  141   PYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 68.5 bits (168),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 43/272 (16%)

Query  8    LQDRLERWAQRL-QNLTVSPLTRDYPENQKADLKRAIEAFESLKLPRDVHTGLQKLSGPS  66
             Q     W ++L   L V  L +DY        K    +F    L  D    L+KL+   
Sbjct  191  YQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSF---TLDEDTEELLRKLAKAH  247

Query  67   SGFIT--FLAAFVVLVARLTGDEDIAVATSSAEDGRP----------FV----LRVSIDQ  110
               +    LAA+ +L++R TG +DI V T  +  GRP          FV    LR+    
Sbjct  248  GTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGS--GRPSPDIERMVGMFVNTLPLRIDPKG  305

Query  111  SETFQQLYSKVENAFNQG-AADIVPLGSLRSYIQEKTKSERAP---ILFRFAAYDAPASS  166
             +TF +L  +V+            P G L + ++      R P    +F F  Y      
Sbjct  306  GKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSFQNYLG----  361

Query  167  QEYPANTFETTDLVVNVANANGSTSETEL--GAY-----------YNQRLFSSARIAIIL  213
            Q+     F+ ++L ++V++     ++ +L   A            YN  LF    I    
Sbjct  362  QDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYNTSLFDEETIERFA  421

Query  214  KQLAQIVQNASNNPGEAIGRIDFMTDDQRSLL  245
            +   ++++ A  +P + +  +D ++D ++  L
Sbjct  422  EHFKELLEQAIAHPSQPLSELDLLSDAEKQKL  453



Lambda      K        H        a         alpha
   0.318    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0736    0.140     1.90     42.6     43.6 

Effective search space used: 1826748200


Query= TCONS_00035334

Length=1425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  316     2e-99
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 231     5e-67
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  70.8    8e-14
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  68.5    4e-12


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 316 bits (813),  Expect = 2e-99, Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 137/258 (53%), Gaps = 9/258 (3%)

Query  1007  LTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESW---T  1063
             LTGATGFLG  +L  LL     + ++  LVRAK  E AL+R+R     Y  +D       
Sbjct  1     LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  1064  SRLQCVCGDLGKPRFGLSEALWNDLTERVDAVIHNGALVHWVYPYSTLKPANVLGTIDAL  1123
              R+  V GDL +P  GLSE  + +L E VD +IH+ A V++V PY   +  NVLGT + L
Sbjct  61    ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  1124  KLCASGKPKQ-FSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGTGYGQ  1182
             +L   GK  + F  VS T+ ++ +   L  E+    G   +  D+D      GL  GY Q
Sbjct  121   RLAKQGKQLKPFHHVS-TAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQ  179

Query  1183  SKWAGEYLVREAGRRGLKGTIVRPGYVLGDSKTGTTNTDDFLIRMMKGCIQLSARPNIHN  1242
             +KW  E LVREA RRGL   I RP  + G+ KTG  N  DF  R + G I     P+I  
Sbjct  180   TKWLAEQLVREAARRGLPVVIYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSILG  239

Query  1243  T----VNMVPVDHVARVV  1256
                  +++VPVD+VA  +
Sbjct  240   DPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 231 bits (590),  Expect = 5e-67, Method: Composition-based stats.
 Identities = 116/477 (24%), Positives = 186/477 (39%), Gaps = 69/477 (14%)

Query  265  FAQNAEKHPDKLCVVETKSEQSPHREFTYRQINEASNILGHHLVRAGIERGDVVMVYAYR  324
              + A + PDK  +          R  TYR+++E +N L   L   G+ +GD V +    
Sbjct  1    LERQAARTPDKTALEV-----GEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPN  55

Query  325  GVDLVVAVMGILKAGATFSVIDPAYPPERQCIYLDVARPRALINIAKATKEAGELTQLVR  384
              + VVA +  LKAGA +  ++P  P E     L+ +  + LI     T +A +L +L  
Sbjct  56   SPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI-----TDDALKLEEL--  108

Query  385  SFIDENLELRTEIPALALQDDGTLVGGSVEGQDVLANQVSLKSTPVGVVVGPDSTPTLSF  444
                E L     +  + + D   ++      ++     V     P      PD    + +
Sbjct  109  ---LEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIY  162

Query  445  TSGSEGRPKGVRGRHFSLAY----YFPWMSETFKLTPNDRFTMLSGIAHD-PIQRDIFTP  499
            TSG+ G+PKGV   H +L              F L P+DR      + HD  +   +  P
Sbjct  163  TSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGP  222

Query  500  LFLGAQLLVPAREDIQNEK-LAEWMREYSATVTHLTPAMGQILV---GGASAQFPALHHA  555
            L  GA +++P      +   L E +  Y  TV +  P +  +L+       A   +L   
Sbjct  223  LLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLV  282

Query  556  FFVGDILIKRDCRSLQALAPNVNIVNMYGTTETQRAVSYYEIPSYSSQEGFLDTMKDVIP  615
               G  L     R  + L     +VN YG TET   V    +P         + ++ +  
Sbjct  283  LSGGAPLPPELARRFRELFGGA-LVNGYGLTETT-GVVTTPLP-------LDEDLRSLGS  333

Query  616  AGRGMVDVQMLVVNRFDPSRICAIGEVGEIYVRAGGLAEGYLSNEELNKKKFLTNWFVDP  675
             GR +   ++ +V+  +       GE GE+ VR  G+ +GYL++ EL  + F        
Sbjct  334  VGRPLPGTEVKIVDD-ETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDE------  386

Query  676  QKWVEKDKAESQGGNEPWRQFYVGPRDRLYRSGDLGRYTPSGDVECSGRADDQVKIR  732
                                      D  YR+GDLGR    G +E  GR  DQ+K+ 
Sbjct  387  --------------------------DGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 70.8 bits (174),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 85/214 (40%), Gaps = 47/214 (22%)

Query  1005  VFLTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESWTS  1064
             + +TGATGF+G+H++R LL +      V+ L R  S         +   A   + E    
Sbjct  1     ILVTGATGFIGSHLVRRLLEKG---YEVIGLDRLTSAS------NTARLADLRFVE----  47

Query  1065  RLQCVCGDLGKPRFGLSEALWNDLTE--RVDAVIHNGALVHW----VYPYSTLKPANVLG  1118
                   GDL              L    R DAVIH  A+         P   ++ ANVLG
Sbjct  48    ------GDL------TDRDALEKLLADVRPDAVIHLAAVGGVGASIEDPEDFIE-ANVLG  94

Query  1119  TIDALKLCASGKPKQFSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGT  1178
             T++ L+       K+F F SS+ V                 GA I +++      +   +
Sbjct  95    TLNLLEAARKAGVKRFLFASSSEV--------------YGDGAEIPQEETTLTGPLAPNS  140

Query  1179  GYGQSKWAGEYLVREAGRR-GLKGTIVRPGYVLG  1211
              Y  +K AGE+LV       GL+  I+R   V G
Sbjct  141   PYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 68.5 bits (168),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 43/272 (16%)

Query  8    LQDRLERWAQRL-QNLTVSPLTRDYPENQKADLKRAIEAFESLKLPRDVHTGLQKLSGPS  66
             Q     W ++L   L V  L +DY        K    +F    L  D    L+KL+   
Sbjct  191  YQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSF---TLDEDTEELLRKLAKAH  247

Query  67   SGFIT--FLAAFVVLVARLTGDEDIAVATSSAEDGRP----------FV----LRVSIDQ  110
               +    LAA+ +L++R TG +DI V T  +  GRP          FV    LR+    
Sbjct  248  GTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGS--GRPSPDIERMVGMFVNTLPLRIDPKG  305

Query  111  SETFQQLYSKVENAFNQG-AADIVPLGSLRSYIQEKTKSERAP---ILFRFAAYDAPASS  166
             +TF +L  +V+            P G L + ++      R P    +F F  Y      
Sbjct  306  GKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSFQNYLG----  361

Query  167  QEYPANTFETTDLVVNVANANGSTSETEL--GAY-----------YNQRLFSSARIAIIL  213
            Q+     F+ ++L ++V++     ++ +L   A            YN  LF    I    
Sbjct  362  QDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYNTSLFDEETIERFA  421

Query  214  KQLAQIVQNASNNPGEAIGRIDFMTDDQRSLL  245
            +   ++++ A  +P + +  +D ++D ++  L
Sbjct  422  EHFKELLEQAIAHPSQPLSELDLLSDAEKQKL  453



Lambda      K        H        a         alpha
   0.318    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1826748200


Query= TCONS_00031018

Length=1425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  316     2e-99
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 231     5e-67
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  70.8    8e-14
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  68.5    4e-12


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 316 bits (813),  Expect = 2e-99, Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 137/258 (53%), Gaps = 9/258 (3%)

Query  1007  LTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESW---T  1063
             LTGATGFLG  +L  LL     + ++  LVRAK  E AL+R+R     Y  +D       
Sbjct  1     LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  1064  SRLQCVCGDLGKPRFGLSEALWNDLTERVDAVIHNGALVHWVYPYSTLKPANVLGTIDAL  1123
              R+  V GDL +P  GLSE  + +L E VD +IH+ A V++V PY   +  NVLGT + L
Sbjct  61    ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  1124  KLCASGKPKQ-FSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGTGYGQ  1182
             +L   GK  + F  VS T+ ++ +   L  E+    G   +  D+D      GL  GY Q
Sbjct  121   RLAKQGKQLKPFHHVS-TAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQ  179

Query  1183  SKWAGEYLVREAGRRGLKGTIVRPGYVLGDSKTGTTNTDDFLIRMMKGCIQLSARPNIHN  1242
             +KW  E LVREA RRGL   I RP  + G+ KTG  N  DF  R + G I     P+I  
Sbjct  180   TKWLAEQLVREAARRGLPVVIYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSILG  239

Query  1243  T----VNMVPVDHVARVV  1256
                  +++VPVD+VA  +
Sbjct  240   DPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 231 bits (590),  Expect = 5e-67, Method: Composition-based stats.
 Identities = 116/477 (24%), Positives = 186/477 (39%), Gaps = 69/477 (14%)

Query  265  FAQNAEKHPDKLCVVETKSEQSPHREFTYRQINEASNILGHHLVRAGIERGDVVMVYAYR  324
              + A + PDK  +          R  TYR+++E +N L   L   G+ +GD V +    
Sbjct  1    LERQAARTPDKTALEV-----GEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPN  55

Query  325  GVDLVVAVMGILKAGATFSVIDPAYPPERQCIYLDVARPRALINIAKATKEAGELTQLVR  384
              + VVA +  LKAGA +  ++P  P E     L+ +  + LI     T +A +L +L  
Sbjct  56   SPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI-----TDDALKLEEL--  108

Query  385  SFIDENLELRTEIPALALQDDGTLVGGSVEGQDVLANQVSLKSTPVGVVVGPDSTPTLSF  444
                E L     +  + + D   ++      ++     V     P      PD    + +
Sbjct  109  ---LEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIY  162

Query  445  TSGSEGRPKGVRGRHFSLAY----YFPWMSETFKLTPNDRFTMLSGIAHD-PIQRDIFTP  499
            TSG+ G+PKGV   H +L              F L P+DR      + HD  +   +  P
Sbjct  163  TSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGP  222

Query  500  LFLGAQLLVPAREDIQNEK-LAEWMREYSATVTHLTPAMGQILV---GGASAQFPALHHA  555
            L  GA +++P      +   L E +  Y  TV +  P +  +L+       A   +L   
Sbjct  223  LLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLV  282

Query  556  FFVGDILIKRDCRSLQALAPNVNIVNMYGTTETQRAVSYYEIPSYSSQEGFLDTMKDVIP  615
               G  L     R  + L     +VN YG TET   V    +P         + ++ +  
Sbjct  283  LSGGAPLPPELARRFRELFGGA-LVNGYGLTETT-GVVTTPLP-------LDEDLRSLGS  333

Query  616  AGRGMVDVQMLVVNRFDPSRICAIGEVGEIYVRAGGLAEGYLSNEELNKKKFLTNWFVDP  675
             GR +   ++ +V+  +       GE GE+ VR  G+ +GYL++ EL  + F        
Sbjct  334  VGRPLPGTEVKIVDD-ETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDE------  386

Query  676  QKWVEKDKAESQGGNEPWRQFYVGPRDRLYRSGDLGRYTPSGDVECSGRADDQVKIR  732
                                      D  YR+GDLGR    G +E  GR  DQ+K+ 
Sbjct  387  --------------------------DGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 70.8 bits (174),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 85/214 (40%), Gaps = 47/214 (22%)

Query  1005  VFLTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESWTS  1064
             + +TGATGF+G+H++R LL +      V+ L R  S         +   A   + E    
Sbjct  1     ILVTGATGFIGSHLVRRLLEKG---YEVIGLDRLTSAS------NTARLADLRFVE----  47

Query  1065  RLQCVCGDLGKPRFGLSEALWNDLTE--RVDAVIHNGALVHW----VYPYSTLKPANVLG  1118
                   GDL              L    R DAVIH  A+         P   ++ ANVLG
Sbjct  48    ------GDL------TDRDALEKLLADVRPDAVIHLAAVGGVGASIEDPEDFIE-ANVLG  94

Query  1119  TIDALKLCASGKPKQFSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGT  1178
             T++ L+       K+F F SS+ V                 GA I +++      +   +
Sbjct  95    TLNLLEAARKAGVKRFLFASSSEV--------------YGDGAEIPQEETTLTGPLAPNS  140

Query  1179  GYGQSKWAGEYLVREAGRR-GLKGTIVRPGYVLG  1211
              Y  +K AGE+LV       GL+  I+R   V G
Sbjct  141   PYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 68.5 bits (168),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 43/272 (16%)

Query  8    LQDRLERWAQRL-QNLTVSPLTRDYPENQKADLKRAIEAFESLKLPRDVHTGLQKLSGPS  66
             Q     W ++L   L V  L +DY        K    +F    L  D    L+KL+   
Sbjct  191  YQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSF---TLDEDTEELLRKLAKAH  247

Query  67   SGFIT--FLAAFVVLVARLTGDEDIAVATSSAEDGRP----------FV----LRVSIDQ  110
               +    LAA+ +L++R TG +DI V T  +  GRP          FV    LR+    
Sbjct  248  GTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGS--GRPSPDIERMVGMFVNTLPLRIDPKG  305

Query  111  SETFQQLYSKVENAFNQG-AADIVPLGSLRSYIQEKTKSERAP---ILFRFAAYDAPASS  166
             +TF +L  +V+            P G L + ++      R P    +F F  Y      
Sbjct  306  GKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSFQNYLG----  361

Query  167  QEYPANTFETTDLVVNVANANGSTSETEL--GAY-----------YNQRLFSSARIAIIL  213
            Q+     F+ ++L ++V++     ++ +L   A            YN  LF    I    
Sbjct  362  QDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYNTSLFDEETIERFA  421

Query  214  KQLAQIVQNASNNPGEAIGRIDFMTDDQRSLL  245
            +   ++++ A  +P + +  +D ++D ++  L
Sbjct  422  EHFKELLEQAIAHPSQPLSELDLLSDAEKQKL  453



Lambda      K        H        a         alpha
   0.318    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1826748200


Query= TCONS_00035336

Length=1425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  316     2e-99
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 231     5e-67
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  70.8    8e-14
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  68.5    4e-12


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 316 bits (813),  Expect = 2e-99, Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 137/258 (53%), Gaps = 9/258 (3%)

Query  1007  LTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESW---T  1063
             LTGATGFLG  +L  LL     + ++  LVRAK  E AL+R+R     Y  +D       
Sbjct  1     LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  1064  SRLQCVCGDLGKPRFGLSEALWNDLTERVDAVIHNGALVHWVYPYSTLKPANVLGTIDAL  1123
              R+  V GDL +P  GLSE  + +L E VD +IH+ A V++V PY   +  NVLGT + L
Sbjct  61    ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  1124  KLCASGKPKQ-FSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGTGYGQ  1182
             +L   GK  + F  VS T+ ++ +   L  E+    G   +  D+D      GL  GY Q
Sbjct  121   RLAKQGKQLKPFHHVS-TAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQ  179

Query  1183  SKWAGEYLVREAGRRGLKGTIVRPGYVLGDSKTGTTNTDDFLIRMMKGCIQLSARPNIHN  1242
             +KW  E LVREA RRGL   I RP  + G+ KTG  N  DF  R + G I     P+I  
Sbjct  180   TKWLAEQLVREAARRGLPVVIYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSILG  239

Query  1243  T----VNMVPVDHVARVV  1256
                  +++VPVD+VA  +
Sbjct  240   DPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 231 bits (590),  Expect = 5e-67, Method: Composition-based stats.
 Identities = 116/477 (24%), Positives = 186/477 (39%), Gaps = 69/477 (14%)

Query  265  FAQNAEKHPDKLCVVETKSEQSPHREFTYRQINEASNILGHHLVRAGIERGDVVMVYAYR  324
              + A + PDK  +          R  TYR+++E +N L   L   G+ +GD V +    
Sbjct  1    LERQAARTPDKTALEV-----GEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPN  55

Query  325  GVDLVVAVMGILKAGATFSVIDPAYPPERQCIYLDVARPRALINIAKATKEAGELTQLVR  384
              + VVA +  LKAGA +  ++P  P E     L+ +  + LI     T +A +L +L  
Sbjct  56   SPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI-----TDDALKLEEL--  108

Query  385  SFIDENLELRTEIPALALQDDGTLVGGSVEGQDVLANQVSLKSTPVGVVVGPDSTPTLSF  444
                E L     +  + + D   ++      ++     V     P      PD    + +
Sbjct  109  ---LEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIY  162

Query  445  TSGSEGRPKGVRGRHFSLAY----YFPWMSETFKLTPNDRFTMLSGIAHD-PIQRDIFTP  499
            TSG+ G+PKGV   H +L              F L P+DR      + HD  +   +  P
Sbjct  163  TSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGP  222

Query  500  LFLGAQLLVPAREDIQNEK-LAEWMREYSATVTHLTPAMGQILV---GGASAQFPALHHA  555
            L  GA +++P      +   L E +  Y  TV +  P +  +L+       A   +L   
Sbjct  223  LLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLV  282

Query  556  FFVGDILIKRDCRSLQALAPNVNIVNMYGTTETQRAVSYYEIPSYSSQEGFLDTMKDVIP  615
               G  L     R  + L     +VN YG TET   V    +P         + ++ +  
Sbjct  283  LSGGAPLPPELARRFRELFGGA-LVNGYGLTETT-GVVTTPLP-------LDEDLRSLGS  333

Query  616  AGRGMVDVQMLVVNRFDPSRICAIGEVGEIYVRAGGLAEGYLSNEELNKKKFLTNWFVDP  675
             GR +   ++ +V+  +       GE GE+ VR  G+ +GYL++ EL  + F        
Sbjct  334  VGRPLPGTEVKIVDD-ETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDE------  386

Query  676  QKWVEKDKAESQGGNEPWRQFYVGPRDRLYRSGDLGRYTPSGDVECSGRADDQVKIR  732
                                      D  YR+GDLGR    G +E  GR  DQ+K+ 
Sbjct  387  --------------------------DGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 70.8 bits (174),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 85/214 (40%), Gaps = 47/214 (22%)

Query  1005  VFLTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESWTS  1064
             + +TGATGF+G+H++R LL +      V+ L R  S         +   A   + E    
Sbjct  1     ILVTGATGFIGSHLVRRLLEKG---YEVIGLDRLTSAS------NTARLADLRFVE----  47

Query  1065  RLQCVCGDLGKPRFGLSEALWNDLTE--RVDAVIHNGALVHW----VYPYSTLKPANVLG  1118
                   GDL              L    R DAVIH  A+         P   ++ ANVLG
Sbjct  48    ------GDL------TDRDALEKLLADVRPDAVIHLAAVGGVGASIEDPEDFIE-ANVLG  94

Query  1119  TIDALKLCASGKPKQFSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGT  1178
             T++ L+       K+F F SS+ V                 GA I +++      +   +
Sbjct  95    TLNLLEAARKAGVKRFLFASSSEV--------------YGDGAEIPQEETTLTGPLAPNS  140

Query  1179  GYGQSKWAGEYLVREAGRR-GLKGTIVRPGYVLG  1211
              Y  +K AGE+LV       GL+  I+R   V G
Sbjct  141   PYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 68.5 bits (168),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 43/272 (16%)

Query  8    LQDRLERWAQRL-QNLTVSPLTRDYPENQKADLKRAIEAFESLKLPRDVHTGLQKLSGPS  66
             Q     W ++L   L V  L +DY        K    +F    L  D    L+KL+   
Sbjct  191  YQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSF---TLDEDTEELLRKLAKAH  247

Query  67   SGFIT--FLAAFVVLVARLTGDEDIAVATSSAEDGRP----------FV----LRVSIDQ  110
               +    LAA+ +L++R TG +DI V T  +  GRP          FV    LR+    
Sbjct  248  GTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGS--GRPSPDIERMVGMFVNTLPLRIDPKG  305

Query  111  SETFQQLYSKVENAFNQG-AADIVPLGSLRSYIQEKTKSERAP---ILFRFAAYDAPASS  166
             +TF +L  +V+            P G L + ++      R P    +F F  Y      
Sbjct  306  GKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSFQNYLG----  361

Query  167  QEYPANTFETTDLVVNVANANGSTSETEL--GAY-----------YNQRLFSSARIAIIL  213
            Q+     F+ ++L ++V++     ++ +L   A            YN  LF    I    
Sbjct  362  QDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYNTSLFDEETIERFA  421

Query  214  KQLAQIVQNASNNPGEAIGRIDFMTDDQRSLL  245
            +   ++++ A  +P + +  +D ++D ++  L
Sbjct  422  EHFKELLEQAIAHPSQPLSELDLLSDAEKQKL  453



Lambda      K        H        a         alpha
   0.318    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1826748200


Query= TCONS_00035335

Length=1425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  316     2e-99
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 231     5e-67
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  70.8    8e-14
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  68.5    4e-12


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 316 bits (813),  Expect = 2e-99, Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 137/258 (53%), Gaps = 9/258 (3%)

Query  1007  LTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESW---T  1063
             LTGATGFLG  +L  LL     + ++  LVRAK  E AL+R+R     Y  +D       
Sbjct  1     LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  1064  SRLQCVCGDLGKPRFGLSEALWNDLTERVDAVIHNGALVHWVYPYSTLKPANVLGTIDAL  1123
              R+  V GDL +P  GLSE  + +L E VD +IH+ A V++V PY   +  NVLGT + L
Sbjct  61    ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  1124  KLCASGKPKQ-FSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGTGYGQ  1182
             +L   GK  + F  VS T+ ++ +   L  E+    G   +  D+D      GL  GY Q
Sbjct  121   RLAKQGKQLKPFHHVS-TAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQ  179

Query  1183  SKWAGEYLVREAGRRGLKGTIVRPGYVLGDSKTGTTNTDDFLIRMMKGCIQLSARPNIHN  1242
             +KW  E LVREA RRGL   I RP  + G+ KTG  N  DF  R + G I     P+I  
Sbjct  180   TKWLAEQLVREAARRGLPVVIYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSILG  239

Query  1243  T----VNMVPVDHVARVV  1256
                  +++VPVD+VA  +
Sbjct  240   DPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 231 bits (590),  Expect = 5e-67, Method: Composition-based stats.
 Identities = 116/477 (24%), Positives = 186/477 (39%), Gaps = 69/477 (14%)

Query  265  FAQNAEKHPDKLCVVETKSEQSPHREFTYRQINEASNILGHHLVRAGIERGDVVMVYAYR  324
              + A + PDK  +          R  TYR+++E +N L   L   G+ +GD V +    
Sbjct  1    LERQAARTPDKTALEV-----GEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPN  55

Query  325  GVDLVVAVMGILKAGATFSVIDPAYPPERQCIYLDVARPRALINIAKATKEAGELTQLVR  384
              + VVA +  LKAGA +  ++P  P E     L+ +  + LI     T +A +L +L  
Sbjct  56   SPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI-----TDDALKLEEL--  108

Query  385  SFIDENLELRTEIPALALQDDGTLVGGSVEGQDVLANQVSLKSTPVGVVVGPDSTPTLSF  444
                E L     +  + + D   ++      ++     V     P      PD    + +
Sbjct  109  ---LEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIY  162

Query  445  TSGSEGRPKGVRGRHFSLAY----YFPWMSETFKLTPNDRFTMLSGIAHD-PIQRDIFTP  499
            TSG+ G+PKGV   H +L              F L P+DR      + HD  +   +  P
Sbjct  163  TSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGP  222

Query  500  LFLGAQLLVPAREDIQNEK-LAEWMREYSATVTHLTPAMGQILV---GGASAQFPALHHA  555
            L  GA +++P      +   L E +  Y  TV +  P +  +L+       A   +L   
Sbjct  223  LLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLV  282

Query  556  FFVGDILIKRDCRSLQALAPNVNIVNMYGTTETQRAVSYYEIPSYSSQEGFLDTMKDVIP  615
               G  L     R  + L     +VN YG TET   V    +P         + ++ +  
Sbjct  283  LSGGAPLPPELARRFRELFGGA-LVNGYGLTETT-GVVTTPLP-------LDEDLRSLGS  333

Query  616  AGRGMVDVQMLVVNRFDPSRICAIGEVGEIYVRAGGLAEGYLSNEELNKKKFLTNWFVDP  675
             GR +   ++ +V+  +       GE GE+ VR  G+ +GYL++ EL  + F        
Sbjct  334  VGRPLPGTEVKIVDD-ETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDE------  386

Query  676  QKWVEKDKAESQGGNEPWRQFYVGPRDRLYRSGDLGRYTPSGDVECSGRADDQVKIR  732
                                      D  YR+GDLGR    G +E  GR  DQ+K+ 
Sbjct  387  --------------------------DGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 70.8 bits (174),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 85/214 (40%), Gaps = 47/214 (22%)

Query  1005  VFLTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESWTS  1064
             + +TGATGF+G+H++R LL +      V+ L R  S         +   A   + E    
Sbjct  1     ILVTGATGFIGSHLVRRLLEKG---YEVIGLDRLTSAS------NTARLADLRFVE----  47

Query  1065  RLQCVCGDLGKPRFGLSEALWNDLTE--RVDAVIHNGALVHW----VYPYSTLKPANVLG  1118
                   GDL              L    R DAVIH  A+         P   ++ ANVLG
Sbjct  48    ------GDL------TDRDALEKLLADVRPDAVIHLAAVGGVGASIEDPEDFIE-ANVLG  94

Query  1119  TIDALKLCASGKPKQFSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGT  1178
             T++ L+       K+F F SS+ V                 GA I +++      +   +
Sbjct  95    TLNLLEAARKAGVKRFLFASSSEV--------------YGDGAEIPQEETTLTGPLAPNS  140

Query  1179  GYGQSKWAGEYLVREAGRR-GLKGTIVRPGYVLG  1211
              Y  +K AGE+LV       GL+  I+R   V G
Sbjct  141   PYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 68.5 bits (168),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 43/272 (16%)

Query  8    LQDRLERWAQRL-QNLTVSPLTRDYPENQKADLKRAIEAFESLKLPRDVHTGLQKLSGPS  66
             Q     W ++L   L V  L +DY        K    +F    L  D    L+KL+   
Sbjct  191  YQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSF---TLDEDTEELLRKLAKAH  247

Query  67   SGFIT--FLAAFVVLVARLTGDEDIAVATSSAEDGRP----------FV----LRVSIDQ  110
               +    LAA+ +L++R TG +DI V T  +  GRP          FV    LR+    
Sbjct  248  GTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGS--GRPSPDIERMVGMFVNTLPLRIDPKG  305

Query  111  SETFQQLYSKVENAFNQG-AADIVPLGSLRSYIQEKTKSERAP---ILFRFAAYDAPASS  166
             +TF +L  +V+            P G L + ++      R P    +F F  Y      
Sbjct  306  GKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSFQNYLG----  361

Query  167  QEYPANTFETTDLVVNVANANGSTSETEL--GAY-----------YNQRLFSSARIAIIL  213
            Q+     F+ ++L ++V++     ++ +L   A            YN  LF    I    
Sbjct  362  QDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYNTSLFDEETIERFA  421

Query  214  KQLAQIVQNASNNPGEAIGRIDFMTDDQRSLL  245
            +   ++++ A  +P + +  +D ++D ++  L
Sbjct  422  EHFKELLEQAIAHPSQPLSELDLLSDAEKQKL  453



Lambda      K        H        a         alpha
   0.318    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1826748200


Query= TCONS_00031024

Length=1229
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  272     7e-84
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 232     1e-67
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  71.2    6e-14
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  68.1    4e-12


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 272 bits (697),  Expect = 7e-84, Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 116/215 (54%), Gaps = 5/215 (2%)

Query  1007  LTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESW---T  1063
             LTGATGFLG  +L  LL     + ++  LVRAK  E AL+R+R     Y  +D       
Sbjct  1     LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  1064  SRLQCVCGDLGKPRFGLSEALWNDLTERVDAVIHNGALVHWVYPYSTLKPANVLGTIDAL  1123
              R+  V GDL +P  GLSE  + +L E VD +IH+ A V++V PY   +  NVLGT + L
Sbjct  61    ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  1124  KLCASGKPKQ-FSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGTGYGQ  1182
             +L   GK  + F  V ST+ ++ +   L  E+    G   +  D+D      GL  GY Q
Sbjct  121   RLAKQGKQLKPFHHV-STAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQ  179

Query  1183  SKWAGEYLVREAGRRGLKGTIVRPGYVLGDSKTGS  1217
             +KW  E LVREA RRGL   I RP  + G+ KTG 
Sbjct  180   TKWLAEQLVREAARRGLPVVIYRPSIITGEPKTGW  214


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 232 bits (593),  Expect = 1e-67, Method: Composition-based stats.
 Identities = 116/477 (24%), Positives = 186/477 (39%), Gaps = 69/477 (14%)

Query  265  FAQNAEKHPDKLCVVETKSEQSPHREFTYRQINEASNILGHHLVRAGIERGDVVMVYAYR  324
              + A + PDK  +          R  TYR+++E +N L   L   G+ +GD V +    
Sbjct  1    LERQAARTPDKTALEV-----GEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPN  55

Query  325  GVDLVVAVMGILKAGATFSVIDPAYPPERQCIYLDVARPRALINIAKATKEAGELTQLVR  384
              + VVA +  LKAGA +  ++P  P E     L+ +  + LI     T +A +L +L  
Sbjct  56   SPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI-----TDDALKLEEL--  108

Query  385  SFIDENLELRTEIPALALQDDGTLVGGSVEGQDVLANQVSLKSTPVGVVVGPDSTPTLSF  444
                E L     +  + + D   ++      ++     V     P      PD    + +
Sbjct  109  ---LEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIY  162

Query  445  TSGSEGRPKGVRGRHFSLAY----YFPWMSETFKLTPNDRFTMLSGIAHD-PIQRDIFTP  499
            TSG+ G+PKGV   H +L              F L P+DR      + HD  +   +  P
Sbjct  163  TSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGP  222

Query  500  LFLGAQLLVPAREDIQNEK-LAEWMREYSATVTHLTPAMGQILV---GGASAQFPALHHA  555
            L  GA +++P      +   L E +  Y  TV +  P +  +L+       A   +L   
Sbjct  223  LLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLV  282

Query  556  FFVGDILIKRDCRSLQALAPNVNIVNMYGTTETQRAVSYYEIPSYSSQEGFLDTMKDVIP  615
               G  L     R  + L     +VN YG TET   V    +P         + ++ +  
Sbjct  283  LSGGAPLPPELARRFRELFGGA-LVNGYGLTETT-GVVTTPLP-------LDEDLRSLGS  333

Query  616  AGRGMVDVQMLVVNRFDPSRICAIGEVGEIYVRAGGLAEGYLSNEELNKKKFLTNWFVDP  675
             GR +   ++ +V+  +       GE GE+ VR  G+ +GYL++ EL  + F        
Sbjct  334  VGRPLPGTEVKIVDD-ETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDE------  386

Query  676  QKWVEKDKAESQGGNEPWRQFYVGPRDRLYRSGDLGRYTPSGDVECSGRADDQVKIR  732
                                      D  YR+GDLGR    G +E  GR  DQ+K+ 
Sbjct  387  --------------------------DGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 71.2 bits (175),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 85/214 (40%), Gaps = 47/214 (22%)

Query  1005  VFLTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESWTS  1064
             + +TGATGF+G+H++R LL +      V+ L R  S         +   A   + E    
Sbjct  1     ILVTGATGFIGSHLVRRLLEKG---YEVIGLDRLTSAS------NTARLADLRFVE----  47

Query  1065  RLQCVCGDLGKPRFGLSEALWNDLTE--RVDAVIHNGALVHW----VYPYSTLKPANVLG  1118
                   GDL              L    R DAVIH  A+         P   ++ ANVLG
Sbjct  48    ------GDL------TDRDALEKLLADVRPDAVIHLAAVGGVGASIEDPEDFIE-ANVLG  94

Query  1119  TIDALKLCASGKPKQFSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGT  1178
             T++ L+       K+F F SS+ V                 GA I +++      +   +
Sbjct  95    TLNLLEAARKAGVKRFLFASSSEV--------------YGDGAEIPQEETTLTGPLAPNS  140

Query  1179  GYGQSKWAGEYLVREAGRR-GLKGTIVRPGYVLG  1211
              Y  +K AGE+LV       GL+  I+R   V G
Sbjct  141   PYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 68.1 bits (167),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 43/272 (16%)

Query  8    LQDRLERWAQRL-QNLTVSPLTRDYPENQKADLKRAIEAFESLKLPRDVHTGLQKLSGPS  66
             Q     W ++L   L V  L +DY        K    +F    L  D    L+KL+   
Sbjct  191  YQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSF---TLDEDTEELLRKLAKAH  247

Query  67   SGFIT--FLAAFVVLVARLTGDEDIAVATSSAEDGRP----------FV----LRVSIDQ  110
               +    LAA+ +L++R TG +DI V T  +  GRP          FV    LR+    
Sbjct  248  GTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGS--GRPSPDIERMVGMFVNTLPLRIDPKG  305

Query  111  SETFQQLYSKVENAFNQG-AADIVPLGSLRSYIQEKTKSERAP---ILFRFAAYDAPASS  166
             +TF +L  +V+            P G L + ++      R P    +F F  Y      
Sbjct  306  GKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSFQNYLG----  361

Query  167  QEYPANTFETTDLVVNVANANGSTSETEL--GAY-----------YNQRLFSSARIAIIL  213
            Q+     F+ ++L ++V++     ++ +L   A            YN  LF    I    
Sbjct  362  QDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYNTSLFDEETIERFA  421

Query  214  KQLAQIVQNASNNPGEAIGRIDFMTDDQRSLL  245
            +   ++++ A  +P + +  +D ++D ++  L
Sbjct  422  EHFKELLEQAIAHPSQPLSELDLLSDAEKQKL  453



Lambda      K        H        a         alpha
   0.318    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1580541416


Query= TCONS_00031023

Length=1229
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  272     7e-84
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 232     1e-67
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  71.2    6e-14
CDD:395541 pfam00668, Condensation, Condensation domain. This dom...  68.1    4e-12


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 272 bits (697),  Expect = 7e-84, Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 116/215 (54%), Gaps = 5/215 (2%)

Query  1007  LTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESW---T  1063
             LTGATGFLG  +L  LL     + ++  LVRAK  E AL+R+R     Y  +D       
Sbjct  1     LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  1064  SRLQCVCGDLGKPRFGLSEALWNDLTERVDAVIHNGALVHWVYPYSTLKPANVLGTIDAL  1123
              R+  V GDL +P  GLSE  + +L E VD +IH+ A V++V PY   +  NVLGT + L
Sbjct  61    ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  1124  KLCASGKPKQ-FSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGTGYGQ  1182
             +L   GK  + F  V ST+ ++ +   L  E+    G   +  D+D      GL  GY Q
Sbjct  121   RLAKQGKQLKPFHHV-STAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQ  179

Query  1183  SKWAGEYLVREAGRRGLKGTIVRPGYVLGDSKTGS  1217
             +KW  E LVREA RRGL   I RP  + G+ KTG 
Sbjct  180   TKWLAEQLVREAARRGLPVVIYRPSIITGEPKTGW  214


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 232 bits (593),  Expect = 1e-67, Method: Composition-based stats.
 Identities = 116/477 (24%), Positives = 186/477 (39%), Gaps = 69/477 (14%)

Query  265  FAQNAEKHPDKLCVVETKSEQSPHREFTYRQINEASNILGHHLVRAGIERGDVVMVYAYR  324
              + A + PDK  +          R  TYR+++E +N L   L   G+ +GD V +    
Sbjct  1    LERQAARTPDKTALEV-----GEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPN  55

Query  325  GVDLVVAVMGILKAGATFSVIDPAYPPERQCIYLDVARPRALINIAKATKEAGELTQLVR  384
              + VVA +  LKAGA +  ++P  P E     L+ +  + LI     T +A +L +L  
Sbjct  56   SPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI-----TDDALKLEEL--  108

Query  385  SFIDENLELRTEIPALALQDDGTLVGGSVEGQDVLANQVSLKSTPVGVVVGPDSTPTLSF  444
                E L     +  + + D   ++      ++     V     P      PD    + +
Sbjct  109  ---LEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIY  162

Query  445  TSGSEGRPKGVRGRHFSLAY----YFPWMSETFKLTPNDRFTMLSGIAHD-PIQRDIFTP  499
            TSG+ G+PKGV   H +L              F L P+DR      + HD  +   +  P
Sbjct  163  TSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGP  222

Query  500  LFLGAQLLVPAREDIQNEK-LAEWMREYSATVTHLTPAMGQILV---GGASAQFPALHHA  555
            L  GA +++P      +   L E +  Y  TV +  P +  +L+       A   +L   
Sbjct  223  LLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLV  282

Query  556  FFVGDILIKRDCRSLQALAPNVNIVNMYGTTETQRAVSYYEIPSYSSQEGFLDTMKDVIP  615
               G  L     R  + L     +VN YG TET   V    +P         + ++ +  
Sbjct  283  LSGGAPLPPELARRFRELFGGA-LVNGYGLTETT-GVVTTPLP-------LDEDLRSLGS  333

Query  616  AGRGMVDVQMLVVNRFDPSRICAIGEVGEIYVRAGGLAEGYLSNEELNKKKFLTNWFVDP  675
             GR +   ++ +V+  +       GE GE+ VR  G+ +GYL++ EL  + F        
Sbjct  334  VGRPLPGTEVKIVDD-ETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDE------  386

Query  676  QKWVEKDKAESQGGNEPWRQFYVGPRDRLYRSGDLGRYTPSGDVECSGRADDQVKIR  732
                                      D  YR+GDLGR    G +E  GR  DQ+K+ 
Sbjct  387  --------------------------DGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 71.2 bits (175),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 85/214 (40%), Gaps = 47/214 (22%)

Query  1005  VFLTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESWTS  1064
             + +TGATGF+G+H++R LL +      V+ L R  S         +   A   + E    
Sbjct  1     ILVTGATGFIGSHLVRRLLEKG---YEVIGLDRLTSAS------NTARLADLRFVE----  47

Query  1065  RLQCVCGDLGKPRFGLSEALWNDLTE--RVDAVIHNGALVHW----VYPYSTLKPANVLG  1118
                   GDL              L    R DAVIH  A+         P   ++ ANVLG
Sbjct  48    ------GDL------TDRDALEKLLADVRPDAVIHLAAVGGVGASIEDPEDFIE-ANVLG  94

Query  1119  TIDALKLCASGKPKQFSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGT  1178
             T++ L+       K+F F SS+ V                 GA I +++      +   +
Sbjct  95    TLNLLEAARKAGVKRFLFASSSEV--------------YGDGAEIPQEETTLTGPLAPNS  140

Query  1179  GYGQSKWAGEYLVREAGRR-GLKGTIVRPGYVLG  1211
              Y  +K AGE+LV       GL+  I+R   V G
Sbjct  141   PYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174


>CDD:395541 pfam00668, Condensation, Condensation domain.  This domain is 
found in many multi-domain enzymes which synthesize peptide 
antibiotics. This domain catalyzes a condensation reaction 
to form peptide bonds in non- ribosomal peptide biosynthesis. 
It is usually found to the carboxy side of a phosphopantetheine 
binding domain (pfam00550). It has been shown that mutations 
in the HHXXXDG motif abolish activity suggesting this 
is part of the active site.
Length=454

 Score = 68.1 bits (167),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 43/272 (16%)

Query  8    LQDRLERWAQRL-QNLTVSPLTRDYPENQKADLKRAIEAFESLKLPRDVHTGLQKLSGPS  66
             Q     W ++L   L V  L +DY        K    +F    L  D    L+KL+   
Sbjct  191  YQKDAAYWLEQLEGELPVLQLPKDYARPADRSFKGDRLSF---TLDEDTEELLRKLAKAH  247

Query  67   SGFIT--FLAAFVVLVARLTGDEDIAVATSSAEDGRP----------FV----LRVSIDQ  110
               +    LAA+ +L++R TG +DI V T  +  GRP          FV    LR+    
Sbjct  248  GTTLNDVLLAAYGLLLSRYTGQDDIVVGTPGS--GRPSPDIERMVGMFVNTLPLRIDPKG  305

Query  111  SETFQQLYSKVENAFNQG-AADIVPLGSLRSYIQEKTKSERAP---ILFRFAAYDAPASS  166
             +TF +L  +V+            P G L + ++      R P    +F F  Y      
Sbjct  306  GKTFSELIKRVQEDLLSAEPHQGYPFGDLVNDLRLPRDLSRHPLFDPMFSFQNYLG----  361

Query  167  QEYPANTFETTDLVVNVANANGSTSETEL--GAY-----------YNQRLFSSARIAIIL  213
            Q+     F+ ++L ++V++     ++ +L   A            YN  LF    I    
Sbjct  362  QDSQEEEFQLSELDLSVSSVIEEEAKYDLSLTASERGGGLTIKIDYNTSLFDEETIERFA  421

Query  214  KQLAQIVQNASNNPGEAIGRIDFMTDDQRSLL  245
            +   ++++ A  +P + +  +D ++D ++  L
Sbjct  422  EHFKELLEQAIAHPSQPLSELDLLSDAEKQKL  453



Lambda      K        H        a         alpha
   0.318    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1580541416


Query= TCONS_00035338

Length=1189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  316     4e-100
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 229     1e-66 
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  70.8    7e-14 


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 316 bits (812),  Expect = 4e-100, Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 137/258 (53%), Gaps = 9/258 (3%)

Query  771   LTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESW---T  827
             LTGATGFLG  +L  LL     + ++  LVRAK  E AL+R+R     Y  +D       
Sbjct  1     LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  828   SRLQCVCGDLGKPRFGLSEALWNDLTERVDAVIHNGALVHWVYPYSTLKPANVLGTIDAL  887
              R+  V GDL +P  GLSE  + +L E VD +IH+ A V++V PY   +  NVLGT + L
Sbjct  61    ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  888   KLCASGKPKQ-FSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGTGYGQ  946
             +L   GK  + F  VS T+ ++ +   L  E+    G   +  D+D      GL  GY Q
Sbjct  121   RLAKQGKQLKPFHHVS-TAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQ  179

Query  947   SKWAGEYLVREAGRRGLKGTIVRPGYVLGDSKTGTTNTDDFLIRMMKGCIQLSARPNIHN  1006
             +KW  E LVREA RRGL   I RP  + G+ KTG  N  DF  R + G I     P+I  
Sbjct  180   TKWLAEQLVREAARRGLPVVIYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSILG  239

Query  1007  T----VNMVPVDHVARVV  1020
                  +++VPVD+VA  +
Sbjct  240   DPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 229 bits (586),  Expect = 1e-66, Method: Composition-based stats.
 Identities = 116/477 (24%), Positives = 186/477 (39%), Gaps = 69/477 (14%)

Query  29   FAQNAEKHPDKLCVVETKSEQSPHREFTYRQINEASNILGHHLVRAGIERGDVVMVYAYR  88
              + A + PDK  +          R  TYR+++E +N L   L   G+ +GD V +    
Sbjct  1    LERQAARTPDKTALEV-----GEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPN  55

Query  89   GVDLVVAVMGILKAGATFSVIDPAYPPERQCIYLDVARPRALINIAKATKEAGELTQLVR  148
              + VVA +  LKAGA +  ++P  P E     L+ +  + LI     T +A +L +L  
Sbjct  56   SPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI-----TDDALKLEEL--  108

Query  149  SFIDENLELRTEIPALALQDDGTLVGGSVEGQDVLANQVSLKSTPVGVVVGPDSTPTLSF  208
                E L     +  + + D   ++      ++     V     P      PD    + +
Sbjct  109  ---LEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIY  162

Query  209  TSGSEGRPKGVRGRHFSLAY----YFPWMSETFKLTPNDRFTMLSGIAHD-PIQRDIFTP  263
            TSG+ G+PKGV   H +L              F L P+DR      + HD  +   +  P
Sbjct  163  TSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGP  222

Query  264  LFLGAQLLVPAREDIQNEK-LAEWMREYSATVTHLTPAMGQILV---GGASAQFPALHHA  319
            L  GA +++P      +   L E +  Y  TV +  P +  +L+       A   +L   
Sbjct  223  LLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLV  282

Query  320  FFVGDILIKRDCRSLQALAPNVNIVNMYGTTETQRAVSYYEIPSYSSQEGFLDTMKDVIP  379
               G  L     R  + L     +VN YG TET   V    +P         + ++ +  
Sbjct  283  LSGGAPLPPELARRFRELFGGA-LVNGYGLTETT-GVVTTPLP-------LDEDLRSLGS  333

Query  380  AGRGMVDVQMLVVNRFDPSRICAIGEVGEIYVRAGGLAEGYLSNEELNKKKFLTNWFVDP  439
             GR +   ++ +V+  +       GE GE+ VR  G+ +GYL++ EL  + F        
Sbjct  334  VGRPLPGTEVKIVDD-ETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDE------  386

Query  440  QKWVEKDKAESQGGNEPWRQFYVGPRDRLYRSGDLGRYTPSGDVECSGRADDQVKIR  496
                                      D  YR+GDLGR    G +E  GR  DQ+K+ 
Sbjct  387  --------------------------DGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 70.8 bits (174),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 85/214 (40%), Gaps = 47/214 (22%)

Query  769  VFLTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESWTS  828
            + +TGATGF+G+H++R LL +      V+ L R  S         +   A   + E    
Sbjct  1    ILVTGATGFIGSHLVRRLLEKG---YEVIGLDRLTSAS------NTARLADLRFVE----  47

Query  829  RLQCVCGDLGKPRFGLSEALWNDLTE--RVDAVIHNGALVHW----VYPYSTLKPANVLG  882
                  GDL              L    R DAVIH  A+         P   ++ ANVLG
Sbjct  48   ------GDL------TDRDALEKLLADVRPDAVIHLAAVGGVGASIEDPEDFIE-ANVLG  94

Query  883  TIDALKLCASGKPKQFSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGT  942
            T++ L+       K+F F SS+ V                 GA I +++      +   +
Sbjct  95   TLNLLEAARKAGVKRFLFASSSEV--------------YGDGAEIPQEETTLTGPLAPNS  140

Query  943  GYGQSKWAGEYLVREAGRR-GLKGTIVRPGYVLG  975
             Y  +K AGE+LV       GL+  I+R   V G
Sbjct  141  PYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174



Lambda      K        H        a         alpha
   0.319    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1524691896


Query= TCONS_00035337

Length=1189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462334 pfam07993, NAD_binding_4, Male sterility protein. This...  316     4e-100
CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 229     1e-66 
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  70.8    7e-14 


>CDD:462334 pfam07993, NAD_binding_4, Male sterility protein.  This family 
represents the C-terminal region of the male sterility protein 
in a number of arabidopsis and drosophila. A sequence-related 
jojoba acyl CoA reductase is also included.
Length=257

 Score = 316 bits (812),  Expect = 4e-100, Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 137/258 (53%), Gaps = 9/258 (3%)

Query  771   LTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESW---T  827
             LTGATGFLG  +L  LL     + ++  LVRAK  E AL+R+R     Y  +D       
Sbjct  1     LTGATGFLGKVLLEKLLRSTPDVKKIYLLVRAKDGESALERLRQELEKYPLFDALLKEAL  60

Query  828   SRLQCVCGDLGKPRFGLSEALWNDLTERVDAVIHNGALVHWVYPYSTLKPANVLGTIDAL  887
              R+  V GDL +P  GLSE  + +L E VD +IH+ A V++V PY   +  NVLGT + L
Sbjct  61    ERIVPVAGDLSEPNLGLSEEDFQELAEEVDVIIHSAATVNFVEPYDDARAVNVLGTREVL  120

Query  888   KLCASGKPKQ-FSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGTGYGQ  946
             +L   GK  + F  VS T+ ++ +   L  E+    G   +  D+D      GL  GY Q
Sbjct  121   RLAKQGKQLKPFHHVS-TAYVNGERGGLVEEKPYPEGEDDMLLDEDEPALLGGLPNGYTQ  179

Query  947   SKWAGEYLVREAGRRGLKGTIVRPGYVLGDSKTGTTNTDDFLIRMMKGCIQLSARPNIHN  1006
             +KW  E LVREA RRGL   I RP  + G+ KTG  N  DF  R + G I     P+I  
Sbjct  180   TKWLAEQLVREAARRGLPVVIYRPSIITGEPKTGWINNFDFGPRGLLGGIGKGVLPSILG  239

Query  1007  T----VNMVPVDHVARVV  1020
                  +++VPVD+VA  +
Sbjct  240   DPDAVLDLVPVDYVANAI  257


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 229 bits (586),  Expect = 1e-66, Method: Composition-based stats.
 Identities = 116/477 (24%), Positives = 186/477 (39%), Gaps = 69/477 (14%)

Query  29   FAQNAEKHPDKLCVVETKSEQSPHREFTYRQINEASNILGHHLVRAGIERGDVVMVYAYR  88
              + A + PDK  +          R  TYR+++E +N L   L   G+ +GD V +    
Sbjct  1    LERQAARTPDKTALEV-----GEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPN  55

Query  89   GVDLVVAVMGILKAGATFSVIDPAYPPERQCIYLDVARPRALINIAKATKEAGELTQLVR  148
              + VVA +  LKAGA +  ++P  P E     L+ +  + LI     T +A +L +L  
Sbjct  56   SPEWVVAFLACLKAGAVYVPLNPRLPAEELAYILEDSGAKVLI-----TDDALKLEEL--  108

Query  149  SFIDENLELRTEIPALALQDDGTLVGGSVEGQDVLANQVSLKSTPVGVVVGPDSTPTLSF  208
                E L     +  + + D   ++      ++     V     P      PD    + +
Sbjct  109  ---LEALGKLEVVKLVLVLDRDPVLKEEPLPEEAKPADVPP---PPPPPPDPDDLAYIIY  162

Query  209  TSGSEGRPKGVRGRHFSLAY----YFPWMSETFKLTPNDRFTMLSGIAHD-PIQRDIFTP  263
            TSG+ G+PKGV   H +L              F L P+DR      + HD  +   +  P
Sbjct  163  TSGTTGKPKGVMLTHRNLVANVLSIKRVRPRGFGLGPDDRVLSTLPLFHDFGLSLGLLGP  222

Query  264  LFLGAQLLVPAREDIQNEK-LAEWMREYSATVTHLTPAMGQILV---GGASAQFPALHHA  319
            L  GA +++P      +   L E +  Y  TV +  P +  +L+       A   +L   
Sbjct  223  LLAGATVVLPPGFPALDPAALLELIERYKVTVLYGVPTLLNMLLEAGAPKRALLSSLRLV  282

Query  320  FFVGDILIKRDCRSLQALAPNVNIVNMYGTTETQRAVSYYEIPSYSSQEGFLDTMKDVIP  379
               G  L     R  + L     +VN YG TET   V    +P         + ++ +  
Sbjct  283  LSGGAPLPPELARRFRELFGGA-LVNGYGLTETT-GVVTTPLP-------LDEDLRSLGS  333

Query  380  AGRGMVDVQMLVVNRFDPSRICAIGEVGEIYVRAGGLAEGYLSNEELNKKKFLTNWFVDP  439
             GR +   ++ +V+  +       GE GE+ VR  G+ +GYL++ EL  + F        
Sbjct  334  VGRPLPGTEVKIVDD-ETGEPVPPGEPGELCVRGPGVMKGYLNDPELTAEAFDE------  386

Query  440  QKWVEKDKAESQGGNEPWRQFYVGPRDRLYRSGDLGRYTPSGDVECSGRADDQVKIR  496
                                      D  YR+GDLGR    G +E  GR  DQ+K+ 
Sbjct  387  --------------------------DGWYRTGDLGRRDEDGYLEIVGRKKDQIKLG  417


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 70.8 bits (174),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 85/214 (40%), Gaps = 47/214 (22%)

Query  769  VFLTGATGFLGAHILRDLLTRKSPMARVVALVRAKSDEQALDRIRSTCRAYGFWDESWTS  828
            + +TGATGF+G+H++R LL +      V+ L R  S         +   A   + E    
Sbjct  1    ILVTGATGFIGSHLVRRLLEKG---YEVIGLDRLTSAS------NTARLADLRFVE----  47

Query  829  RLQCVCGDLGKPRFGLSEALWNDLTE--RVDAVIHNGALVHW----VYPYSTLKPANVLG  882
                  GDL              L    R DAVIH  A+         P   ++ ANVLG
Sbjct  48   ------GDL------TDRDALEKLLADVRPDAVIHLAAVGGVGASIEDPEDFIE-ANVLG  94

Query  883  TIDALKLCASGKPKQFSFVSSTSVLDNDHYVLESERIIAAGGAGISEDDDLEGSSVGLGT  942
            T++ L+       K+F F SS+ V                 GA I +++      +   +
Sbjct  95   TLNLLEAARKAGVKRFLFASSSEV--------------YGDGAEIPQEETTLTGPLAPNS  140

Query  943  GYGQSKWAGEYLVREAGRR-GLKGTIVRPGYVLG  975
             Y  +K AGE+LV       GL+  I+R   V G
Sbjct  141  PYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174



Lambda      K        H        a         alpha
   0.319    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0729    0.140     1.90     42.6     43.6 

Effective search space used: 1524691896


Query= TCONS_00031026

Length=169
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  100     6e-27


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 100 bits (252),  Expect = 6e-27, Method: Composition-based stats.
 Identities = 46/146 (32%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query  13   AARNGWHQFISMQNYHNLLAREEEREMIPYCLDSGVGLIPWSPMARGVLARPWGSRSSVR  72
            A   G    +++Q  +NLL R +E E++ YC  +G+ LI +SP+  G+L   +       
Sbjct  148  ALTKGKIPIVAVQVEYNLLRRRQEEELLEYCKKNGIPLIAYSPLGGGLLTGKYTRDPDKG  207

Query  73   ENTDATLQLLVRSRETEADKAIVERVEEIAKKKKNISMAQVAIAWVLSHPKEN-PILGLS  131
                  L         EA    +E +EEIA K+  +S AQVA+ W LS P    PI G S
Sbjct  208  PGERRRLLKKGTPLNLEA----LEALEEIA-KEHGVSPAQVALRWALSKPGVTIPIPGAS  262

Query  132  SKERIDEAVAAIKVQLTPEEIKYLEE  157
            + E++++ + A++  L+ EE+  ++E
Sbjct  263  NPEQLEDNLGALEFPLSDEEVARIDE  288



Lambda      K        H        a         alpha
   0.316    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00031027

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00031028

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.147    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00035339

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.147    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00031030

Length=181
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:282094 pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V...  91.1    2e-22


>CDD:282094 pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V).  This 
is a family of eukaryotic ER membrane proteins that are involved 
in the synthesis of glycosylphosphatidylinositol (GPI), 
a glycolipid that anchors many proteins to the eukaryotic 
cell surface. Proteins in this family are involved in transferring 
the second mannose in the biosynthetic pathway of GPI.
Length=439

 Score = 91.1 bits (226),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 89/189 (47%), Gaps = 12/189 (6%)

Query  5    QYIAFNAFCM--TSNAPRPWCGWTIPSIYRFVQEKYWNVGFLRYWVVPNIPLFLLAMPIL  62
            QY  +  FC   ++    PWC   +P +Y ++Q  YW VGFL+YW    IP FLLA+P +
Sbjct  251  QYYLYKTFCPQRSAGNEPPWCKSQLPLLYSYIQSHYWGVGFLKYWTPKQIPNFLLAVPNI  310

Query  63   ALLLRSAFW-----AWRLPSVTSKFSENGANGALTKAMWLLPR---LAIIQALLAVLAFT  114
             LL+ S+ +      W   ++  ++             +L P+   L +    L V+   
Sbjct  311  ILLIYSSIYYSKTHPWLCLTLGLQYPSYNKKAEKPDLGFLSPQVFVLVVHTRALVVIVCF  370

Query  115  SYHVQIINRLSSGYPLWYWYLAAELISDFKNSQSTNKCISISAVAV--QAIMIYGLIHAV  172
              HVQ++ R  S  PL YW+LA  L+SD K   +      I    +   A   Y L+  +
Sbjct  371  FMHVQVLTRFLSFLPLHYWFLADLLVSDKKKMWNPLGDDKIVKFYIYWLACSFYILLGTL  430

Query  173  LFGSFLPPA  181
            LF +FLPP 
Sbjct  431  LFANFLPPT  439



Lambda      K        H        a         alpha
   0.328    0.138    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00031029

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:282094 pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V...  150     3e-41


>CDD:282094 pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V).  This 
is a family of eukaryotic ER membrane proteins that are involved 
in the synthesis of glycosylphosphatidylinositol (GPI), 
a glycolipid that anchors many proteins to the eukaryotic 
cell surface. Proteins in this family are involved in transferring 
the second mannose in the biosynthetic pathway of GPI.
Length=439

 Score = 150 bits (381),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 115/461 (25%), Positives = 198/461 (43%), Gaps = 48/461 (10%)

Query  33   LSILFGLWKALIFLVIVICPGLGYDTSTSLLLYPTRDL--SDVDPLHFPLSLRFVRWDSI  90
            L++   L+++L  L++ + P   + TSTSL L P      S+V+          + WDS+
Sbjct  4    LTLYAVLFRSLQLLLVFLTPIRQFPTSTSLALNPPCSASPSEVNSYWNKYLWNLLSWDSV  63

Query  91   YFVHAAEHGYVFEQEWAFGYGYTRLLALLASVFPRS--ASLGDSARIGLVAVVLSHIAHY  148
            +F+  +E+GY +E E+AF   +   + L            L     I      LS +  +
Sbjct  64   FFLKISENGYQYEHEYAFSPLWPFFVRLFIKSNNDPLYHLLRLRVAIENSLFYLSILLFF  123

Query  149  LSVLVLYRLSVNIFGGDTAKQKTLCFLSAALHIISPAGAFLSAPYGEALFSLLNISGLYL  208
            L+  +L +             +T+ F ++ L  ++PA  FL++ Y E L +L    G++ 
Sbjct  124  LAAKILSQNIRQSL-----FARTISFKASLLFCLTPAAGFLTSIYSEPLSALFAFVGIWS  178

Query  209  YSSSVLDAATNHRLSRDLKLLAAAVLISAATAVRSNGI--LGGVLF-----AYDALLQLP  261
                +               ++  +  + +  +RSNG+  LG          +  L++L 
Sbjct  179  LECGID--------------ISWVLWFAYSFIMRSNGLASLGRSNCVLLGIYFIDLIELT  224

Query  262  QILSRGLSLAVVSRLAVIVLGGCVIALGMAVPQYIAFNAFCM--TSNAPRPWCGWTIPSI  319
            +      +   V  +    L G ++ L     QY  +  FC   ++    PWC   +P +
Sbjct  225  K------NRKFVKAICFPFLSGSLMFLPFLYFQYYLYKTFCPQRSAGNEPPWCKSQLPLL  278

Query  320  YRFVQEKYWNVGFLRYWVVPNIPLFLLAMPILALLLRSAFW-----AWRLPSVTSKFSEN  374
            Y ++Q  YW VGFL+YW    IP FLLA+P + LL+ S+ +      W   ++  ++   
Sbjct  279  YSYIQSHYWGVGFLKYWTPKQIPNFLLAVPNIILLIYSSIYYSKTHPWLCLTLGLQYPSY  338

Query  375  GANGALTKAMWLLPR---LAIIQALLAVLAFTSYHVQIINRLSSGYPLWYWYLAAELISD  431
                      +L P+   L +    L V+     HVQ++ R  S  PL YW+LA  L+SD
Sbjct  339  NKKAEKPDLGFLSPQVFVLVVHTRALVVIVCFFMHVQVLTRFLSFLPLHYWFLADLLVSD  398

Query  432  FKNSQSTNKCISISAVAV--QAIMIYGLIHAVLFGSFLPPA  470
             K   +      I    +   A   Y L+  +LF +FLPP 
Sbjct  399  KKKMWNPLGDDKIVKFYIYWLACSFYILLGTLLFANFLPPT  439



Lambda      K        H        a         alpha
   0.327    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00035340

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:282094 pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V...  95.4    2e-22


>CDD:282094 pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V).  This 
is a family of eukaryotic ER membrane proteins that are involved 
in the synthesis of glycosylphosphatidylinositol (GPI), 
a glycolipid that anchors many proteins to the eukaryotic 
cell surface. Proteins in this family are involved in transferring 
the second mannose in the biosynthetic pathway of GPI.
Length=439

 Score = 95.4 bits (237),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 128/309 (41%), Gaps = 38/309 (12%)

Query  33   LSILFGLWKALIFLVIVICPGLGYDTSTSLLLYPTRDL--SDVDPLHFPLSLRFVRWDSI  90
            L++   L+++L  L++ + P   + TSTSL L P      S+V+          + WDS+
Sbjct  4    LTLYAVLFRSLQLLLVFLTPIRQFPTSTSLALNPPCSASPSEVNSYWNKYLWNLLSWDSV  63

Query  91   YFVHAAEHGYVFEQEWAFGYGYTRLLALLASVFPRS--ASLGDSARIGLVAVVLSHIAHY  148
            +F+  +E+GY +E E+AF   +   + L            L     I      LS +  +
Sbjct  64   FFLKISENGYQYEHEYAFSPLWPFFVRLFIKSNNDPLYHLLRLRVAIENSLFYLSILLFF  123

Query  149  LSVLVLYRLSVNIFGGDTAKQKTLCFLSAALHIISPAGAFLSAPYGEALFSLLNISGLYL  208
            L+  +L +             +T+ F ++ L  ++PA  FL++ Y E L +L    G++ 
Sbjct  124  LAAKILSQNIRQSL-----FARTISFKASLLFCLTPAAGFLTSIYSEPLSALFAFVGIWS  178

Query  209  YSSSVLDAATNHRLSRDLKLLAAAVLISAATAVRSNGI--LGGVLF-----AYDALLQLP  261
                +               ++  +  + +  +RSNG+  LG          +  L++L 
Sbjct  179  LECGI--------------DISWVLWFAYSFIMRSNGLASLGRSNCVLLGIYFIDLIELT  224

Query  262  QILSRGLSLAVVSRLAVIVLGGCVIALGMAVPQYIAFNAFCM--TSNAPRPWCGWTIPSI  319
            +      +   V  +    L G ++ L     QY  +  FC   ++    PWC   +P +
Sbjct  225  K------NRKFVKAICFPFLSGSLMFLPFLYFQYYLYKTFCPQRSAGNEPPWCKSQLPLL  278

Query  320  YRFVQEKYW  328
            Y ++Q  YW
Sbjct  279  YSYIQSHYW  287



Lambda      K        H        a         alpha
   0.327    0.140    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00035341

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.540    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00031031

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:282094 pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V...  151     1e-41


>CDD:282094 pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V).  This 
is a family of eukaryotic ER membrane proteins that are involved 
in the synthesis of glycosylphosphatidylinositol (GPI), 
a glycolipid that anchors many proteins to the eukaryotic 
cell surface. Proteins in this family are involved in transferring 
the second mannose in the biosynthetic pathway of GPI.
Length=439

 Score = 151 bits (384),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 115/461 (25%), Positives = 198/461 (43%), Gaps = 48/461 (10%)

Query  33   LSILFGLWKALIFLVIVICPGLGYDTSTSLLLYPTRDL--SDVDPLHFPLSLRFVRWDSI  90
            L++   L+++L  L++ + P   + TSTSL L P      S+V+          + WDS+
Sbjct  4    LTLYAVLFRSLQLLLVFLTPIRQFPTSTSLALNPPCSASPSEVNSYWNKYLWNLLSWDSV  63

Query  91   YFVHAAEHGYVFEQEWAFGYGYTRLLALLASGIPRS--ASLGDSARIGLVAVVLSHIAHY  148
            +F+  +E+GY +E E+AF   +   + L            L     I      LS +  +
Sbjct  64   FFLKISENGYQYEHEYAFSPLWPFFVRLFIKSNNDPLYHLLRLRVAIENSLFYLSILLFF  123

Query  149  LSVLVLYRLSVNIFGGDTAKQKTLCFLSAALHIISPAGAFLSAPYGEALFSLLNISGLYL  208
            L+  +L +             +T+ F ++ L  ++PA  FL++ Y E L +L    G++ 
Sbjct  124  LAAKILSQNIRQSL-----FARTISFKASLLFCLTPAAGFLTSIYSEPLSALFAFVGIWS  178

Query  209  YSSSVLDAATNHRLSRDLKLLAAAVLISAATAVRSNGI--LGGVLF-----AYDALLQLP  261
                +               ++  +  + +  +RSNG+  LG          +  L++L 
Sbjct  179  LECGID--------------ISWVLWFAYSFIMRSNGLASLGRSNCVLLGIYFIDLIELT  224

Query  262  QILSRGLSLAVVSRLAVIVLGGCVIALGMAVPQYIAFNAFCM--TSNAPRPWCGWTIPSI  319
            +      +   V  +    L G ++ L     QY  +  FC   ++    PWC   +P +
Sbjct  225  K------NRKFVKAICFPFLSGSLMFLPFLYFQYYLYKTFCPQRSAGNEPPWCKSQLPLL  278

Query  320  YRFVQEKYWNVGFLRYWVVPNIPLFLLAMPILALLLRSAFW-----AWRLPSVTSKFSEN  374
            Y ++Q  YW VGFL+YW    IP FLLA+P + LL+ S+ +      W   ++  ++   
Sbjct  279  YSYIQSHYWGVGFLKYWTPKQIPNFLLAVPNIILLIYSSIYYSKTHPWLCLTLGLQYPSY  338

Query  375  GANGALTKAMWLLPR---LAIIQALLAVLAFTSYHVQIINRLSSGYPLWYWYLAAELISD  431
                      +L P+   L +    L V+     HVQ++ R  S  PL YW+LA  L+SD
Sbjct  339  NKKAEKPDLGFLSPQVFVLVVHTRALVVIVCFFMHVQVLTRFLSFLPLHYWFLADLLVSD  398

Query  432  FKNSQSTNKCISISAVAV--QAIMIYGLIHAVLFGSFLPPA  470
             K   +      I    +   A   Y L+  +LF +FLPP 
Sbjct  399  KKKMWNPLGDDKIVKFYIYWLACSFYILLGTLLFANFLPPT  439



Lambda      K        H        a         alpha
   0.327    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00031032

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:282094 pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V...  132     1e-34


>CDD:282094 pfam04188, Mannosyl_trans2, Mannosyltransferase (PIG-V).  This 
is a family of eukaryotic ER membrane proteins that are involved 
in the synthesis of glycosylphosphatidylinositol (GPI), 
a glycolipid that anchors many proteins to the eukaryotic 
cell surface. Proteins in this family are involved in transferring 
the second mannose in the biosynthetic pathway of GPI.
Length=439

 Score = 132 bits (333),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 112/456 (25%), Positives = 195/456 (43%), Gaps = 67/456 (15%)

Query  33   LSILFGLWKALIFLVIVICPGLGYDTSTSLLLYPTRDL--SDVDPLHFPLSLRFVRWDSI  90
            L++   L+++L  L++ + P   + TSTSL L P      S+V+          + WDS+
Sbjct  4    LTLYAVLFRSLQLLLVFLTPIRQFPTSTSLALNPPCSASPSEVNSYWNKYLWNLLSWDSV  63

Query  91   YFVHAAEHGYVFEQEWAFGYGYT-----------------------RLLALLASVLVLYR  127
            +F+  +E+GY +E E+AF   +                           +L    ++L+ 
Sbjct  64   FFLKISENGYQYEHEYAFSPLWPFFVRLFIKSNNDPLYHLLRLRVAIENSLFYLSILLFF  123

Query  128  LSVNIF---GGDTAKQKTLCFLSAALHIISPAGAFLSAPYGEALFSLLNISGLYLYSSSV  184
            L+  I       +   +T+ F ++ L  ++PA  FL++ Y E L +L    G++     +
Sbjct  124  LAAKILSQNIRQSLFARTISFKASLLFCLTPAAGFLTSIYSEPLSALFAFVGIWSLECGI  183

Query  185  LDAATNHRLSRDLKLLAAAVLISAATAVRSNGI--LGGVLF-----AYDALLQLPQILSR  237
                           ++  +  + +  +RSNG+  LG          +  L++L +    
Sbjct  184  D--------------ISWVLWFAYSFIMRSNGLASLGRSNCVLLGIYFIDLIELTK----  225

Query  238  GLSLAVVSRLAVIVLGGCVIALGMAVPQYIAFNAFCM--TSNAPRPWCGWTIPSIYRFVQ  295
              +   V  +    L G ++ L     QY  +  FC   ++    PWC   +P +Y ++Q
Sbjct  226  --NRKFVKAICFPFLSGSLMFLPFLYFQYYLYKTFCPQRSAGNEPPWCKSQLPLLYSYIQ  283

Query  296  EKYWNVGFLRYWVVPNIPLFLLAMPILALLLRSAFW-----AWRLPSVTSKFSENGANGA  350
              YW VGFL+YW    IP FLLA+P + LL+ S+ +      W   ++  ++        
Sbjct  284  SHYWGVGFLKYWTPKQIPNFLLAVPNIILLIYSSIYYSKTHPWLCLTLGLQYPSYNKKAE  343

Query  351  LTKAMWLLPR---LAIIQALLAVLAFTSYHVQIINRLSSGYPLWYWYLAAELISDFKNSQ  407
                 +L P+   L +    L V+     HVQ++ R  S  PL YW+LA  L+SD K   
Sbjct  344  KPDLGFLSPQVFVLVVHTRALVVIVCFFMHVQVLTRFLSFLPLHYWFLADLLVSDKKKMW  403

Query  408  STNKCISISAVAV--QAIMIYGLIHAVLFGSFLPPA  441
            +      I    +   A   Y L+  +LF +FLPP 
Sbjct  404  NPLGDDKIVKFYIYWLACSFYILLGTLLFANFLPPT  439



Lambda      K        H        a         alpha
   0.327    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00031034

Length=1965
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465150 pfam16507, BLM10_mid, Proteasome-substrate-size regula...  736     0.0  
CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF343...  144     5e-41
CDD:435417 pfam16547, BLM10_N, Proteasome-substrate-size regulato...  108     1e-28


>CDD:465150 pfam16507, BLM10_mid, Proteasome-substrate-size regulator, mid 
region.  The ordered regions of the yeast BLM10 or PA200 (human 
homolog), full-length protein encode 32 HEAT repeat (HR)-like 
modules, each comprising two helices joined by a turn, 
with adjacent repeats connected by a linker. Whereas a standard 
HEAT repeat is composed of ~50 residues, the BLM10 HEAT 
repeats are highly variable. The length of helices ranges 
from 8 to 35 residues, turns range from 2 to 87 residues, and 
linkers range from 1 to 88 residues, with the longest linker, 
between HR21 and HR22, containing additional secondary 
structures (two strands and three helices). BLM10_mid is the 
middle ordered region of the three in BLM10. BLM10 is found 
to surround the proteasome entry pore in the 1.2 MDa complex 
of proteasome and BLM10 to form a largely closed dome that 
is expected to restrict access of potential substrates. Thus 
Blm10 and PA200 are predominantly nuclear and stimulate the 
degradation of model peptides, although they do not appear 
to stimulate the degradation of proteins, recognize ubiquitin, 
or utilize ATP.
Length=503

 Score = 736 bits (1903),  Expect = 0.0, Method: Composition-based stats.
 Identities = 253/529 (48%), Positives = 325/529 (61%), Gaps = 27/529 (5%)

Query  375  LEGLIQAVETFFHPSNSGGWTKTLSQLVYYLSDFFLMRWNREQSGEMEVPIGRRLTEPLK  434
            LE LIQ++ETFFHPSNSG WTK LS+ V+YL   F  RWN E+  + + P  RRLT  +K
Sbjct  1    LEKLIQSIETFFHPSNSGSWTKPLSKFVHYLIKQFHKRWNEEEKPDCKTPEERRLTPAIK  60

Query  435  RRFVLCLRDVVFMGIYAKSGTAISFSLSTLQNLAFLEPHLILPGALQRIYPSLQGLVEVH  494
            + FVL LR V+ +GI++K     ++  S LQ LA+LEP LILPG L+RIYPSL+GL E H
Sbjct  61   KEFVLILRPVLLLGIFSKDSDVANYYQSALQYLAYLEPDLILPGILERIYPSLEGLNETH  120

Query  495  RTASSLRALQVLSRIISRTKGYRCHLTTLLGLALPGIDANDLEKTLHALSFIQSACYNIP  554
            RT +SL+AL  L+R +  TK YR HLT LL L LPGID NDL KT + L+FI S    IP
Sbjct  121  RTIASLKALTRLARFLVSTKLYRVHLTPLLSLLLPGIDLNDLSKTSNTLNFIVSIASFIP  180

Query  555  LFDLTKGREDINCDMLAMQWINGEMGRMEAEGAEVQLNYDTDLSDENEEMILRSSTCGFG  614
              DLTK  +                     EG + + + D +L DE E+  LRSST GF 
Sbjct  181  FGDLTKDND---------------------EGDDEEDDEDFELDDELEDNALRSSTTGFE  219

Query  615  DFIVSFLGRVFTLLENLPDASRVRNGSPEENIVNTLPATFMPLLSSLSPEYFDTALSKVV  674
            D++ SFL RVFTLLENLPD  +   G  EE ++N LP T   L  SLS E FD AL K  
Sbjct  220  DWLKSFLDRVFTLLENLPDEGKKTGGKLEEGVINKLPQTLDILFESLSDELFDLALDKFF  279

Query  675  DFVSNHVIHQARDAMAFICNSICKVNPDKALKRFIPVLTQAIRTEIDDNGAGSTRTTGTD  734
            DFVS +V H A DA+  IC ++ K +P+K LK+  P+L   IR EI + GA S RTT ++
Sbjct  280  DFVSTNVKHNAVDAVGIICAALVKRDPEKTLKKLFPLLIANIREEI-EEGASSRRTT-SE  337

Query  735  VLPRDRALVWNISMLSMCVVHVGDAVLAHRKELFDIAVYMQQKCRGIP-TVHISNFIHHL  793
            +LPRDRALVWN+S+L+ CV + G A+L ++ EL ++  Y+ +KC+G P  V  S  +H L
Sbjct  338  ILPRDRALVWNLSILNGCVRNSGSALLKYKDELLELLKYLYEKCKGPPGYVLTSILVHSL  397

Query  794  LLNLTGTYTIDYSLYEPEVLAEGITPKLWSYQPDPDNLTVKWHVPKREELEFAVELFQDQ  853
            L  LT TY  +Y L+ P+        + W      +NL + WHVP  EE++FAVELF+  
Sbjct  398  LSTLTSTYPTEYRLFNPDEWKSPFDEEHWGKLQFDENLKIDWHVPSEEEIDFAVELFESI  457

Query  854  AETALRSLTALTNGTASVKRDGSGKDWSDEVSRNLVLLRLILSGISVLF  902
               AL  L AL        R GS K+WSD+  R L+ LR  LSGIS LF
Sbjct  458  VSPALDKLEALMKEM---SRPGSDKEWSDDFCRYLLYLRHALSGISTLF  503


>CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF3437).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
142 to 163 amino acids in length.
Length=86

 Score = 144 bits (365),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 54/89 (61%), Positives = 65/89 (73%), Gaps = 4/89 (4%)

Query  1877  IVRHGAVLGLGALIQAFPYDSPPPRWMPEALTTLSNRAASDPGIVGSSVKSIISDFKKTR  1936
             I RHGAVLGLGAL+ AFPYD PP  W+PE L+ L++ A SDP  +G +VK  +S+FK+T 
Sbjct  1     IRRHGAVLGLGALVLAFPYDVPP--WVPEVLSELASHA-SDPAPIGKTVKKTLSEFKRTH  57

Query  1937  QDTWHIDAKAFTPDQLEDLSGVL-WKSYF  1964
             QDTW  D K FT DQLEDL  VL W SY+
Sbjct  58    QDTWEEDKKKFTEDQLEDLEDVLSWPSYY  86


>CDD:435417 pfam16547, BLM10_N, Proteasome-substrate-size regulator, N-terminal. 
 The ordered regions of the yeast BLM10 or PA200 (human 
homolog), full-length protein encode 32 HEAT repeat (HR)-like 
modules, each comprising two helices joined by a turn, 
with adjacent repeats connected by a linker. Whereas a standard 
HEAT repeat is composed of ~50 residues, the BLM10 HEAT 
repeats are highly variable. The length of helices ranges from 
8 to 35 residues, turns range from 2 to 87 residues, and 
linkers range from 1 to 88 residues, with the longest linker, 
between HR21 and HR22, containing additional secondary structures 
(two strands and three helices). BLM10_N is the N-terminal 
ordered region of the three in BLM10. BLM10 is found 
to surround the proteasome entry pore in the 1.2 MDa complex 
of proteasome and BLM10 to form a largely closed dome that 
is expected to restrict access of potential substrates. BLM10 
and PA200 are predominantly nuclear and stimulate the degradation 
of model peptides, although they do not appear to stimulate 
the degradation of proteins, recognize ubiquitin, or 
utilize ATP.
Length=81

 Score = 108 bits (273),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 42/79 (53%), Gaps = 9/79 (11%)

Query  18  HEISRATSPGGEPAGVNGEGEPK---------ARVRPRTYPYFKYLPYPIEDEAERERNL  68
            EISR TS G +    N E             AR RPRT+PYFK LPY +E   E+ + L
Sbjct  3   IEISRLTSYGLDYPEDNEEHLKNIYDPNSKWFARYRPRTFPYFKLLPYKVESHKEQAKYL  62

Query  69  REILNQLYIAVEAGDFSPG  87
             IL  LYIA+++ DF  G
Sbjct  63  CHILKNLYIAIKSLDFQGG  81



Lambda      K        H        a         alpha
   0.321    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2456166704


Query= TCONS_00031035

Length=1950
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465150 pfam16507, BLM10_mid, Proteasome-substrate-size regula...  736     0.0  
CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF343...  112     7e-30
CDD:435417 pfam16547, BLM10_N, Proteasome-substrate-size regulato...  108     1e-28


>CDD:465150 pfam16507, BLM10_mid, Proteasome-substrate-size regulator, mid 
region.  The ordered regions of the yeast BLM10 or PA200 (human 
homolog), full-length protein encode 32 HEAT repeat (HR)-like 
modules, each comprising two helices joined by a turn, 
with adjacent repeats connected by a linker. Whereas a standard 
HEAT repeat is composed of ~50 residues, the BLM10 HEAT 
repeats are highly variable. The length of helices ranges 
from 8 to 35 residues, turns range from 2 to 87 residues, and 
linkers range from 1 to 88 residues, with the longest linker, 
between HR21 and HR22, containing additional secondary 
structures (two strands and three helices). BLM10_mid is the 
middle ordered region of the three in BLM10. BLM10 is found 
to surround the proteasome entry pore in the 1.2 MDa complex 
of proteasome and BLM10 to form a largely closed dome that 
is expected to restrict access of potential substrates. Thus 
Blm10 and PA200 are predominantly nuclear and stimulate the 
degradation of model peptides, although they do not appear 
to stimulate the degradation of proteins, recognize ubiquitin, 
or utilize ATP.
Length=503

 Score = 736 bits (1903),  Expect = 0.0, Method: Composition-based stats.
 Identities = 253/529 (48%), Positives = 325/529 (61%), Gaps = 27/529 (5%)

Query  375  LEGLIQAVETFFHPSNSGGWTKTLSQLVYYLSDFFLMRWNREQSGEMEVPIGRRLTEPLK  434
            LE LIQ++ETFFHPSNSG WTK LS+ V+YL   F  RWN E+  + + P  RRLT  +K
Sbjct  1    LEKLIQSIETFFHPSNSGSWTKPLSKFVHYLIKQFHKRWNEEEKPDCKTPEERRLTPAIK  60

Query  435  RRFVLCLRDVVFMGIYAKSGTAISFSLSTLQNLAFLEPHLILPGALQRIYPSLQGLVEVH  494
            + FVL LR V+ +GI++K     ++  S LQ LA+LEP LILPG L+RIYPSL+GL E H
Sbjct  61   KEFVLILRPVLLLGIFSKDSDVANYYQSALQYLAYLEPDLILPGILERIYPSLEGLNETH  120

Query  495  RTASSLRALQVLSRIISRTKGYRCHLTTLLGLALPGIDANDLEKTLHALSFIQSACYNIP  554
            RT +SL+AL  L+R +  TK YR HLT LL L LPGID NDL KT + L+FI S    IP
Sbjct  121  RTIASLKALTRLARFLVSTKLYRVHLTPLLSLLLPGIDLNDLSKTSNTLNFIVSIASFIP  180

Query  555  LFDLTKGREDINCDMLAMQWINGEMGRMEAEGAEVQLNYDTDLSDENEEMILRSSTCGFG  614
              DLTK  +                     EG + + + D +L DE E+  LRSST GF 
Sbjct  181  FGDLTKDND---------------------EGDDEEDDEDFELDDELEDNALRSSTTGFE  219

Query  615  DFIVSFLGRVFTLLENLPDASRVRNGSPEENIVNTLPATFMPLLSSLSPEYFDTALSKVV  674
            D++ SFL RVFTLLENLPD  +   G  EE ++N LP T   L  SLS E FD AL K  
Sbjct  220  DWLKSFLDRVFTLLENLPDEGKKTGGKLEEGVINKLPQTLDILFESLSDELFDLALDKFF  279

Query  675  DFVSNHVIHQARDAMAFICNSICKVNPDKALKRFIPVLTQAIRTEIDDNGAGSTRTTGTD  734
            DFVS +V H A DA+  IC ++ K +P+K LK+  P+L   IR EI + GA S RTT ++
Sbjct  280  DFVSTNVKHNAVDAVGIICAALVKRDPEKTLKKLFPLLIANIREEI-EEGASSRRTT-SE  337

Query  735  VLPRDRALVWNISMLSMCVVHVGDAVLAHRKELFDIAVYMQQKCRGIP-TVHISNFIHHL  793
            +LPRDRALVWN+S+L+ CV + G A+L ++ EL ++  Y+ +KC+G P  V  S  +H L
Sbjct  338  ILPRDRALVWNLSILNGCVRNSGSALLKYKDELLELLKYLYEKCKGPPGYVLTSILVHSL  397

Query  794  LLNLTGTYTIDYSLYEPEVLAEGITPKLWSYQPDPDNLTVKWHVPKREELEFAVELFQDQ  853
            L  LT TY  +Y L+ P+        + W      +NL + WHVP  EE++FAVELF+  
Sbjct  398  LSTLTSTYPTEYRLFNPDEWKSPFDEEHWGKLQFDENLKIDWHVPSEEEIDFAVELFESI  457

Query  854  AETALRSLTALTNGTASVKRDGSGKDWSDEVSRNLVLLRLILSGISVLF  902
               AL  L AL        R GS K+WSD+  R L+ LR  LSGIS LF
Sbjct  458  VSPALDKLEALMKEM---SRPGSDKEWSDDFCRYLLYLRHALSGISTLF  503


>CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF3437).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
142 to 163 amino acids in length.
Length=86

 Score = 112 bits (282),  Expect = 7e-30, Method: Composition-based stats.
 Identities = 41/70 (59%), Positives = 51/70 (73%), Gaps = 3/70 (4%)

Query  1877  IVRHGAVLGLGALIQAFPYDSPPPRWMPEALTTLSNRAASDPGIVGSSVKSIISDFKKTR  1936
             I RHGAVLGLGAL+ AFPYD PP  W+PE L+ L++ A SDP  +G +VK  +S+FK+T 
Sbjct  1     IRRHGAVLGLGALVLAFPYDVPP--WVPEVLSELASHA-SDPAPIGKTVKKTLSEFKRTH  57

Query  1937  QDTWHIDAKV  1946
             QDTW  D K 
Sbjct  58    QDTWEEDKKK  67


>CDD:435417 pfam16547, BLM10_N, Proteasome-substrate-size regulator, N-terminal. 
 The ordered regions of the yeast BLM10 or PA200 (human 
homolog), full-length protein encode 32 HEAT repeat (HR)-like 
modules, each comprising two helices joined by a turn, 
with adjacent repeats connected by a linker. Whereas a standard 
HEAT repeat is composed of ~50 residues, the BLM10 HEAT 
repeats are highly variable. The length of helices ranges from 
8 to 35 residues, turns range from 2 to 87 residues, and 
linkers range from 1 to 88 residues, with the longest linker, 
between HR21 and HR22, containing additional secondary structures 
(two strands and three helices). BLM10_N is the N-terminal 
ordered region of the three in BLM10. BLM10 is found 
to surround the proteasome entry pore in the 1.2 MDa complex 
of proteasome and BLM10 to form a largely closed dome that 
is expected to restrict access of potential substrates. BLM10 
and PA200 are predominantly nuclear and stimulate the degradation 
of model peptides, although they do not appear to stimulate 
the degradation of proteins, recognize ubiquitin, or 
utilize ATP.
Length=81

 Score = 108 bits (273),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 42/79 (53%), Gaps = 9/79 (11%)

Query  18  HEISRATSPGGEPAGVNGEGEPK---------ARVRPRTYPYFKYLPYPIEDEAERERNL  68
            EISR TS G +    N E             AR RPRT+PYFK LPY +E   E+ + L
Sbjct  3   IEISRLTSYGLDYPEDNEEHLKNIYDPNSKWFARYRPRTFPYFKLLPYKVESHKEQAKYL  62

Query  69  REILNQLYIAVEAGDFSPG  87
             IL  LYIA+++ DF  G
Sbjct  63  CHILKNLYIAIKSLDFQGG  81



Lambda      K        H        a         alpha
   0.321    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2436401414


Query= TCONS_00035342

Length=1829
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465150 pfam16507, BLM10_mid, Proteasome-substrate-size regula...  733     0.0  
CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF343...  144     5e-41


>CDD:465150 pfam16507, BLM10_mid, Proteasome-substrate-size regulator, mid 
region.  The ordered regions of the yeast BLM10 or PA200 (human 
homolog), full-length protein encode 32 HEAT repeat (HR)-like 
modules, each comprising two helices joined by a turn, 
with adjacent repeats connected by a linker. Whereas a standard 
HEAT repeat is composed of ~50 residues, the BLM10 HEAT 
repeats are highly variable. The length of helices ranges 
from 8 to 35 residues, turns range from 2 to 87 residues, and 
linkers range from 1 to 88 residues, with the longest linker, 
between HR21 and HR22, containing additional secondary 
structures (two strands and three helices). BLM10_mid is the 
middle ordered region of the three in BLM10. BLM10 is found 
to surround the proteasome entry pore in the 1.2 MDa complex 
of proteasome and BLM10 to form a largely closed dome that 
is expected to restrict access of potential substrates. Thus 
Blm10 and PA200 are predominantly nuclear and stimulate the 
degradation of model peptides, although they do not appear 
to stimulate the degradation of proteins, recognize ubiquitin, 
or utilize ATP.
Length=503

 Score = 733 bits (1896),  Expect = 0.0, Method: Composition-based stats.
 Identities = 253/529 (48%), Positives = 325/529 (61%), Gaps = 27/529 (5%)

Query  239  LEGLIQAVETFFHPSNSGGWTKTLSQLVYYLSDFFLMRWNREQSGEMEVPIGRRLTEPLK  298
            LE LIQ++ETFFHPSNSG WTK LS+ V+YL   F  RWN E+  + + P  RRLT  +K
Sbjct  1    LEKLIQSIETFFHPSNSGSWTKPLSKFVHYLIKQFHKRWNEEEKPDCKTPEERRLTPAIK  60

Query  299  RRFVLCLRDVVFMGIYAKSGTAISFSLSTLQNLAFLEPHLILPGALQRIYPSLQGLVEVH  358
            + FVL LR V+ +GI++K     ++  S LQ LA+LEP LILPG L+RIYPSL+GL E H
Sbjct  61   KEFVLILRPVLLLGIFSKDSDVANYYQSALQYLAYLEPDLILPGILERIYPSLEGLNETH  120

Query  359  RTASSLRALQVLSRIISRTKGYRCHLTTLLGLALPGIDANDLEKTLHALSFIQSACYNIP  418
            RT +SL+AL  L+R +  TK YR HLT LL L LPGID NDL KT + L+FI S    IP
Sbjct  121  RTIASLKALTRLARFLVSTKLYRVHLTPLLSLLLPGIDLNDLSKTSNTLNFIVSIASFIP  180

Query  419  LFDLTKGREDINCDMLAMQWINGEMGRMEAEGAEVQLNYDTDLSDENEEMILRSSTCGFG  478
              DLTK  +                     EG + + + D +L DE E+  LRSST GF 
Sbjct  181  FGDLTKDND---------------------EGDDEEDDEDFELDDELEDNALRSSTTGFE  219

Query  479  DFIVSFLGRVFTLLENLPDASRVRNGSPEENIVNTLPATFMPLLSSLSPEYFDTALSKVV  538
            D++ SFL RVFTLLENLPD  +   G  EE ++N LP T   L  SLS E FD AL K  
Sbjct  220  DWLKSFLDRVFTLLENLPDEGKKTGGKLEEGVINKLPQTLDILFESLSDELFDLALDKFF  279

Query  539  DFVSNHVIHQARDAMAFICNSICKVNPDKALKRFIPVLTQAIRTEIDDNGAGSTRTTGTD  598
            DFVS +V H A DA+  IC ++ K +P+K LK+  P+L   IR EI + GA S RTT ++
Sbjct  280  DFVSTNVKHNAVDAVGIICAALVKRDPEKTLKKLFPLLIANIREEI-EEGASSRRTT-SE  337

Query  599  VLPRDRALVWNISMLSMCVVHVGDAVLAHRKELFDIAVYMQQKCRGIP-TVHISNFIHHL  657
            +LPRDRALVWN+S+L+ CV + G A+L ++ EL ++  Y+ +KC+G P  V  S  +H L
Sbjct  338  ILPRDRALVWNLSILNGCVRNSGSALLKYKDELLELLKYLYEKCKGPPGYVLTSILVHSL  397

Query  658  LLNLTGTYTIDYSLYEPEVLAEGITPKLWSYQPDPDNLTVKWHVPKREELEFAVELFQDQ  717
            L  LT TY  +Y L+ P+        + W      +NL + WHVP  EE++FAVELF+  
Sbjct  398  LSTLTSTYPTEYRLFNPDEWKSPFDEEHWGKLQFDENLKIDWHVPSEEEIDFAVELFESI  457

Query  718  AETALRSLTALTNGTASVKRDGSGKDWSDEVSRNLVLLRLILSGISVLF  766
               AL  L AL        R GS K+WSD+  R L+ LR  LSGIS LF
Sbjct  458  VSPALDKLEALMKEM---SRPGSDKEWSDDFCRYLLYLRHALSGISTLF  503


>CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF3437).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
142 to 163 amino acids in length.
Length=86

 Score = 144 bits (365),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 54/89 (61%), Positives = 65/89 (73%), Gaps = 4/89 (4%)

Query  1741  IVRHGAVLGLGALIQAFPYDSPPPRWMPEALTTLSNRAASDPGIVGSSVKSIISDFKKTR  1800
             I RHGAVLGLGAL+ AFPYD PP  W+PE L+ L++ A SDP  +G +VK  +S+FK+T 
Sbjct  1     IRRHGAVLGLGALVLAFPYDVPP--WVPEVLSELASHA-SDPAPIGKTVKKTLSEFKRTH  57

Query  1801  QDTWHIDAKAFTPDQLEDLSGVL-WKSYF  1828
             QDTW  D K FT DQLEDL  VL W SY+
Sbjct  58    QDTWEEDKKKFTEDQLEDLEDVLSWPSYY  86



Lambda      K        H        a         alpha
   0.321    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2312233196


Query= TCONS_00031033

Length=1965
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465150 pfam16507, BLM10_mid, Proteasome-substrate-size regula...  736     0.0  
CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF343...  144     5e-41
CDD:435417 pfam16547, BLM10_N, Proteasome-substrate-size regulato...  108     1e-28


>CDD:465150 pfam16507, BLM10_mid, Proteasome-substrate-size regulator, mid 
region.  The ordered regions of the yeast BLM10 or PA200 (human 
homolog), full-length protein encode 32 HEAT repeat (HR)-like 
modules, each comprising two helices joined by a turn, 
with adjacent repeats connected by a linker. Whereas a standard 
HEAT repeat is composed of ~50 residues, the BLM10 HEAT 
repeats are highly variable. The length of helices ranges 
from 8 to 35 residues, turns range from 2 to 87 residues, and 
linkers range from 1 to 88 residues, with the longest linker, 
between HR21 and HR22, containing additional secondary 
structures (two strands and three helices). BLM10_mid is the 
middle ordered region of the three in BLM10. BLM10 is found 
to surround the proteasome entry pore in the 1.2 MDa complex 
of proteasome and BLM10 to form a largely closed dome that 
is expected to restrict access of potential substrates. Thus 
Blm10 and PA200 are predominantly nuclear and stimulate the 
degradation of model peptides, although they do not appear 
to stimulate the degradation of proteins, recognize ubiquitin, 
or utilize ATP.
Length=503

 Score = 736 bits (1903),  Expect = 0.0, Method: Composition-based stats.
 Identities = 253/529 (48%), Positives = 325/529 (61%), Gaps = 27/529 (5%)

Query  375  LEGLIQAVETFFHPSNSGGWTKTLSQLVYYLSDFFLMRWNREQSGEMEVPIGRRLTEPLK  434
            LE LIQ++ETFFHPSNSG WTK LS+ V+YL   F  RWN E+  + + P  RRLT  +K
Sbjct  1    LEKLIQSIETFFHPSNSGSWTKPLSKFVHYLIKQFHKRWNEEEKPDCKTPEERRLTPAIK  60

Query  435  RRFVLCLRDVVFMGIYAKSGTAISFSLSTLQNLAFLEPHLILPGALQRIYPSLQGLVEVH  494
            + FVL LR V+ +GI++K     ++  S LQ LA+LEP LILPG L+RIYPSL+GL E H
Sbjct  61   KEFVLILRPVLLLGIFSKDSDVANYYQSALQYLAYLEPDLILPGILERIYPSLEGLNETH  120

Query  495  RTASSLRALQVLSRIISRTKGYRCHLTTLLGLALPGIDANDLEKTLHALSFIQSACYNIP  554
            RT +SL+AL  L+R +  TK YR HLT LL L LPGID NDL KT + L+FI S    IP
Sbjct  121  RTIASLKALTRLARFLVSTKLYRVHLTPLLSLLLPGIDLNDLSKTSNTLNFIVSIASFIP  180

Query  555  LFDLTKGREDINCDMLAMQWINGEMGRMEAEGAEVQLNYDTDLSDENEEMILRSSTCGFG  614
              DLTK  +                     EG + + + D +L DE E+  LRSST GF 
Sbjct  181  FGDLTKDND---------------------EGDDEEDDEDFELDDELEDNALRSSTTGFE  219

Query  615  DFIVSFLGRVFTLLENLPDASRVRNGSPEENIVNTLPATFMPLLSSLSPEYFDTALSKVV  674
            D++ SFL RVFTLLENLPD  +   G  EE ++N LP T   L  SLS E FD AL K  
Sbjct  220  DWLKSFLDRVFTLLENLPDEGKKTGGKLEEGVINKLPQTLDILFESLSDELFDLALDKFF  279

Query  675  DFVSNHVIHQARDAMAFICNSICKVNPDKALKRFIPVLTQAIRTEIDDNGAGSTRTTGTD  734
            DFVS +V H A DA+  IC ++ K +P+K LK+  P+L   IR EI + GA S RTT ++
Sbjct  280  DFVSTNVKHNAVDAVGIICAALVKRDPEKTLKKLFPLLIANIREEI-EEGASSRRTT-SE  337

Query  735  VLPRDRALVWNISMLSMCVVHVGDAVLAHRKELFDIAVYMQQKCRGIP-TVHISNFIHHL  793
            +LPRDRALVWN+S+L+ CV + G A+L ++ EL ++  Y+ +KC+G P  V  S  +H L
Sbjct  338  ILPRDRALVWNLSILNGCVRNSGSALLKYKDELLELLKYLYEKCKGPPGYVLTSILVHSL  397

Query  794  LLNLTGTYTIDYSLYEPEVLAEGITPKLWSYQPDPDNLTVKWHVPKREELEFAVELFQDQ  853
            L  LT TY  +Y L+ P+        + W      +NL + WHVP  EE++FAVELF+  
Sbjct  398  LSTLTSTYPTEYRLFNPDEWKSPFDEEHWGKLQFDENLKIDWHVPSEEEIDFAVELFESI  457

Query  854  AETALRSLTALTNGTASVKRDGSGKDWSDEVSRNLVLLRLILSGISVLF  902
               AL  L AL        R GS K+WSD+  R L+ LR  LSGIS LF
Sbjct  458  VSPALDKLEALMKEM---SRPGSDKEWSDDFCRYLLYLRHALSGISTLF  503


>CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF3437).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
142 to 163 amino acids in length.
Length=86

 Score = 144 bits (365),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 54/89 (61%), Positives = 65/89 (73%), Gaps = 4/89 (4%)

Query  1877  IVRHGAVLGLGALIQAFPYDSPPPRWMPEALTTLSNRAASDPGIVGSSVKSIISDFKKTR  1936
             I RHGAVLGLGAL+ AFPYD PP  W+PE L+ L++ A SDP  +G +VK  +S+FK+T 
Sbjct  1     IRRHGAVLGLGALVLAFPYDVPP--WVPEVLSELASHA-SDPAPIGKTVKKTLSEFKRTH  57

Query  1937  QDTWHIDAKAFTPDQLEDLSGVL-WKSYF  1964
             QDTW  D K FT DQLEDL  VL W SY+
Sbjct  58    QDTWEEDKKKFTEDQLEDLEDVLSWPSYY  86


>CDD:435417 pfam16547, BLM10_N, Proteasome-substrate-size regulator, N-terminal. 
 The ordered regions of the yeast BLM10 or PA200 (human 
homolog), full-length protein encode 32 HEAT repeat (HR)-like 
modules, each comprising two helices joined by a turn, 
with adjacent repeats connected by a linker. Whereas a standard 
HEAT repeat is composed of ~50 residues, the BLM10 HEAT 
repeats are highly variable. The length of helices ranges from 
8 to 35 residues, turns range from 2 to 87 residues, and 
linkers range from 1 to 88 residues, with the longest linker, 
between HR21 and HR22, containing additional secondary structures 
(two strands and three helices). BLM10_N is the N-terminal 
ordered region of the three in BLM10. BLM10 is found 
to surround the proteasome entry pore in the 1.2 MDa complex 
of proteasome and BLM10 to form a largely closed dome that 
is expected to restrict access of potential substrates. BLM10 
and PA200 are predominantly nuclear and stimulate the degradation 
of model peptides, although they do not appear to stimulate 
the degradation of proteins, recognize ubiquitin, or 
utilize ATP.
Length=81

 Score = 108 bits (273),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 42/79 (53%), Gaps = 9/79 (11%)

Query  18  HEISRATSPGGEPAGVNGEGEPK---------ARVRPRTYPYFKYLPYPIEDEAERERNL  68
            EISR TS G +    N E             AR RPRT+PYFK LPY +E   E+ + L
Sbjct  3   IEISRLTSYGLDYPEDNEEHLKNIYDPNSKWFARYRPRTFPYFKLLPYKVESHKEQAKYL  62

Query  69  REILNQLYIAVEAGDFSPG  87
             IL  LYIA+++ DF  G
Sbjct  63  CHILKNLYIAIKSLDFQGG  81



Lambda      K        H        a         alpha
   0.321    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2456166704


Query= TCONS_00035343

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF343...  143     1e-42
CDD:435417 pfam16547, BLM10_N, Proteasome-substrate-size regulato...  107     4e-29


>CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF3437).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
142 to 163 amino acids in length.
Length=86

 Score = 143 bits (364),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 54/89 (61%), Positives = 65/89 (73%), Gaps = 4/89 (4%)

Query  371  IVRHGAVLGLGALIQAFPYDSPPPRWMPEALTTLSNRAASDPGIVGSSVKSIISDFKKTR  430
            I RHGAVLGLGAL+ AFPYD PP  W+PE L+ L++ A SDP  +G +VK  +S+FK+T 
Sbjct  1    IRRHGAVLGLGALVLAFPYDVPP--WVPEVLSELASHA-SDPAPIGKTVKKTLSEFKRTH  57

Query  431  QDTWHIDAKAFTPDQLEDLSGVL-WKSYF  458
            QDTW  D K FT DQLEDL  VL W SY+
Sbjct  58   QDTWEEDKKKFTEDQLEDLEDVLSWPSYY  86


>CDD:435417 pfam16547, BLM10_N, Proteasome-substrate-size regulator, N-terminal. 
 The ordered regions of the yeast BLM10 or PA200 (human 
homolog), full-length protein encode 32 HEAT repeat (HR)-like 
modules, each comprising two helices joined by a turn, 
with adjacent repeats connected by a linker. Whereas a standard 
HEAT repeat is composed of ~50 residues, the BLM10 HEAT 
repeats are highly variable. The length of helices ranges from 
8 to 35 residues, turns range from 2 to 87 residues, and 
linkers range from 1 to 88 residues, with the longest linker, 
between HR21 and HR22, containing additional secondary structures 
(two strands and three helices). BLM10_N is the N-terminal 
ordered region of the three in BLM10. BLM10 is found 
to surround the proteasome entry pore in the 1.2 MDa complex 
of proteasome and BLM10 to form a largely closed dome that 
is expected to restrict access of potential substrates. BLM10 
and PA200 are predominantly nuclear and stimulate the degradation 
of model peptides, although they do not appear to stimulate 
the degradation of proteins, recognize ubiquitin, or 
utilize ATP.
Length=81

 Score = 107 bits (269),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 42/79 (53%), Gaps = 9/79 (11%)

Query  18  HEISRATSPGGEPAGVNGEGEPK---------ARVRPRTYPYFKYLPYPIEDEAERERNL  68
            EISR TS G +    N E             AR RPRT+PYFK LPY +E   E+ + L
Sbjct  3   IEISRLTSYGLDYPEDNEEHLKNIYDPNSKWFARYRPRTFPYFKLLPYKVESHKEQAKYL  62

Query  69  REILNQLYIAVEAGDFSPG  87
             IL  LYIA+++ DF  G
Sbjct  63  CHILKNLYIAIKSLDFQGG  81



Lambda      K        H        a         alpha
   0.320    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0849    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00035344

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF343...  143     1e-42
CDD:435417 pfam16547, BLM10_N, Proteasome-substrate-size regulato...  107     4e-29


>CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF3437).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
142 to 163 amino acids in length.
Length=86

 Score = 143 bits (364),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 54/89 (61%), Positives = 65/89 (73%), Gaps = 4/89 (4%)

Query  371  IVRHGAVLGLGALIQAFPYDSPPPRWMPEALTTLSNRAASDPGIVGSSVKSIISDFKKTR  430
            I RHGAVLGLGAL+ AFPYD PP  W+PE L+ L++ A SDP  +G +VK  +S+FK+T 
Sbjct  1    IRRHGAVLGLGALVLAFPYDVPP--WVPEVLSELASHA-SDPAPIGKTVKKTLSEFKRTH  57

Query  431  QDTWHIDAKAFTPDQLEDLSGVL-WKSYF  458
            QDTW  D K FT DQLEDL  VL W SY+
Sbjct  58   QDTWEEDKKKFTEDQLEDLEDVLSWPSYY  86


>CDD:435417 pfam16547, BLM10_N, Proteasome-substrate-size regulator, N-terminal. 
 The ordered regions of the yeast BLM10 or PA200 (human 
homolog), full-length protein encode 32 HEAT repeat (HR)-like 
modules, each comprising two helices joined by a turn, 
with adjacent repeats connected by a linker. Whereas a standard 
HEAT repeat is composed of ~50 residues, the BLM10 HEAT 
repeats are highly variable. The length of helices ranges from 
8 to 35 residues, turns range from 2 to 87 residues, and 
linkers range from 1 to 88 residues, with the longest linker, 
between HR21 and HR22, containing additional secondary structures 
(two strands and three helices). BLM10_N is the N-terminal 
ordered region of the three in BLM10. BLM10 is found 
to surround the proteasome entry pore in the 1.2 MDa complex 
of proteasome and BLM10 to form a largely closed dome that 
is expected to restrict access of potential substrates. BLM10 
and PA200 are predominantly nuclear and stimulate the degradation 
of model peptides, although they do not appear to stimulate 
the degradation of proteins, recognize ubiquitin, or 
utilize ATP.
Length=81

 Score = 107 bits (269),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 42/79 (53%), Gaps = 9/79 (11%)

Query  18  HEISRATSPGGEPAGVNGEGEPK---------ARVRPRTYPYFKYLPYPIEDEAERERNL  68
            EISR TS G +    N E             AR RPRT+PYFK LPY +E   E+ + L
Sbjct  3   IEISRLTSYGLDYPEDNEEHLKNIYDPNSKWFARYRPRTFPYFKLLPYKVESHKEQAKYL  62

Query  69  REILNQLYIAVEAGDFSPG  87
             IL  LYIA+++ DF  G
Sbjct  63  CHILKNLYIAIKSLDFQGG  81



Lambda      K        H        a         alpha
   0.320    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00035345

Length=1854
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465150 pfam16507, BLM10_mid, Proteasome-substrate-size regula...  733     0.0  
CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF343...  112     8e-30


>CDD:465150 pfam16507, BLM10_mid, Proteasome-substrate-size regulator, mid 
region.  The ordered regions of the yeast BLM10 or PA200 (human 
homolog), full-length protein encode 32 HEAT repeat (HR)-like 
modules, each comprising two helices joined by a turn, 
with adjacent repeats connected by a linker. Whereas a standard 
HEAT repeat is composed of ~50 residues, the BLM10 HEAT 
repeats are highly variable. The length of helices ranges 
from 8 to 35 residues, turns range from 2 to 87 residues, and 
linkers range from 1 to 88 residues, with the longest linker, 
between HR21 and HR22, containing additional secondary 
structures (two strands and three helices). BLM10_mid is the 
middle ordered region of the three in BLM10. BLM10 is found 
to surround the proteasome entry pore in the 1.2 MDa complex 
of proteasome and BLM10 to form a largely closed dome that 
is expected to restrict access of potential substrates. Thus 
Blm10 and PA200 are predominantly nuclear and stimulate the 
degradation of model peptides, although they do not appear 
to stimulate the degradation of proteins, recognize ubiquitin, 
or utilize ATP.
Length=503

 Score = 733 bits (1896),  Expect = 0.0, Method: Composition-based stats.
 Identities = 253/529 (48%), Positives = 325/529 (61%), Gaps = 27/529 (5%)

Query  279  LEGLIQAVETFFHPSNSGGWTKTLSQLVYYLSDFFLMRWNREQSGEMEVPIGRRLTEPLK  338
            LE LIQ++ETFFHPSNSG WTK LS+ V+YL   F  RWN E+  + + P  RRLT  +K
Sbjct  1    LEKLIQSIETFFHPSNSGSWTKPLSKFVHYLIKQFHKRWNEEEKPDCKTPEERRLTPAIK  60

Query  339  RRFVLCLRDVVFMGIYAKSGTAISFSLSTLQNLAFLEPHLILPGALQRIYPSLQGLVEVH  398
            + FVL LR V+ +GI++K     ++  S LQ LA+LEP LILPG L+RIYPSL+GL E H
Sbjct  61   KEFVLILRPVLLLGIFSKDSDVANYYQSALQYLAYLEPDLILPGILERIYPSLEGLNETH  120

Query  399  RTASSLRALQVLSRIISRTKGYRCHLTTLLGLALPGIDANDLEKTLHALSFIQSACYNIP  458
            RT +SL+AL  L+R +  TK YR HLT LL L LPGID NDL KT + L+FI S    IP
Sbjct  121  RTIASLKALTRLARFLVSTKLYRVHLTPLLSLLLPGIDLNDLSKTSNTLNFIVSIASFIP  180

Query  459  LFDLTKGREDINCDMLAMQWINGEMGRMEAEGAEVQLNYDTDLSDENEEMILRSSTCGFG  518
              DLTK  +                     EG + + + D +L DE E+  LRSST GF 
Sbjct  181  FGDLTKDND---------------------EGDDEEDDEDFELDDELEDNALRSSTTGFE  219

Query  519  DFIVSFLGRVFTLLENLPDASRVRNGSPEENIVNTLPATFMPLLSSLSPEYFDTALSKVV  578
            D++ SFL RVFTLLENLPD  +   G  EE ++N LP T   L  SLS E FD AL K  
Sbjct  220  DWLKSFLDRVFTLLENLPDEGKKTGGKLEEGVINKLPQTLDILFESLSDELFDLALDKFF  279

Query  579  DFVSNHVIHQARDAMAFICNSICKVNPDKALKRFIPVLTQAIRTEIDDNGAGSTRTTGTD  638
            DFVS +V H A DA+  IC ++ K +P+K LK+  P+L   IR EI + GA S RTT ++
Sbjct  280  DFVSTNVKHNAVDAVGIICAALVKRDPEKTLKKLFPLLIANIREEI-EEGASSRRTT-SE  337

Query  639  VLPRDRALVWNISMLSMCVVHVGDAVLAHRKELFDIAVYMQQKCRGIP-TVHISNFIHHL  697
            +LPRDRALVWN+S+L+ CV + G A+L ++ EL ++  Y+ +KC+G P  V  S  +H L
Sbjct  338  ILPRDRALVWNLSILNGCVRNSGSALLKYKDELLELLKYLYEKCKGPPGYVLTSILVHSL  397

Query  698  LLNLTGTYTIDYSLYEPEVLAEGITPKLWSYQPDPDNLTVKWHVPKREELEFAVELFQDQ  757
            L  LT TY  +Y L+ P+        + W      +NL + WHVP  EE++FAVELF+  
Sbjct  398  LSTLTSTYPTEYRLFNPDEWKSPFDEEHWGKLQFDENLKIDWHVPSEEEIDFAVELFESI  457

Query  758  AETALRSLTALTNGTASVKRDGSGKDWSDEVSRNLVLLRLILSGISVLF  806
               AL  L AL        R GS K+WSD+  R L+ LR  LSGIS LF
Sbjct  458  VSPALDKLEALMKEM---SRPGSDKEWSDDFCRYLLYLRHALSGISTLF  503


>CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF3437).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
142 to 163 amino acids in length.
Length=86

 Score = 112 bits (282),  Expect = 8e-30, Method: Composition-based stats.
 Identities = 41/70 (59%), Positives = 51/70 (73%), Gaps = 3/70 (4%)

Query  1781  IVRHGAVLGLGALIQAFPYDSPPPRWMPEALTTLSNRAASDPGIVGSSVKSIISDFKKTR  1840
             I RHGAVLGLGAL+ AFPYD PP  W+PE L+ L++ A SDP  +G +VK  +S+FK+T 
Sbjct  1     IRRHGAVLGLGALVLAFPYDVPP--WVPEVLSELASHA-SDPAPIGKTVKKTLSEFKRTH  57

Query  1841  QDTWHIDAKV  1850
             QDTW  D K 
Sbjct  58    QDTWEEDKKK  67



Lambda      K        H        a         alpha
   0.321    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2345666296


Query= TCONS_00035346

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF343...  143     1e-42
CDD:435417 pfam16547, BLM10_N, Proteasome-substrate-size regulato...  107     4e-29


>CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF3437).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
142 to 163 amino acids in length.
Length=86

 Score = 143 bits (364),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 54/89 (61%), Positives = 65/89 (73%), Gaps = 4/89 (4%)

Query  371  IVRHGAVLGLGALIQAFPYDSPPPRWMPEALTTLSNRAASDPGIVGSSVKSIISDFKKTR  430
            I RHGAVLGLGAL+ AFPYD PP  W+PE L+ L++ A SDP  +G +VK  +S+FK+T 
Sbjct  1    IRRHGAVLGLGALVLAFPYDVPP--WVPEVLSELASHA-SDPAPIGKTVKKTLSEFKRTH  57

Query  431  QDTWHIDAKAFTPDQLEDLSGVL-WKSYF  458
            QDTW  D K FT DQLEDL  VL W SY+
Sbjct  58   QDTWEEDKKKFTEDQLEDLEDVLSWPSYY  86


>CDD:435417 pfam16547, BLM10_N, Proteasome-substrate-size regulator, N-terminal. 
 The ordered regions of the yeast BLM10 or PA200 (human 
homolog), full-length protein encode 32 HEAT repeat (HR)-like 
modules, each comprising two helices joined by a turn, 
with adjacent repeats connected by a linker. Whereas a standard 
HEAT repeat is composed of ~50 residues, the BLM10 HEAT 
repeats are highly variable. The length of helices ranges from 
8 to 35 residues, turns range from 2 to 87 residues, and 
linkers range from 1 to 88 residues, with the longest linker, 
between HR21 and HR22, containing additional secondary structures 
(two strands and three helices). BLM10_N is the N-terminal 
ordered region of the three in BLM10. BLM10 is found 
to surround the proteasome entry pore in the 1.2 MDa complex 
of proteasome and BLM10 to form a largely closed dome that 
is expected to restrict access of potential substrates. BLM10 
and PA200 are predominantly nuclear and stimulate the degradation 
of model peptides, although they do not appear to stimulate 
the degradation of proteins, recognize ubiquitin, or 
utilize ATP.
Length=81

 Score = 107 bits (269),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 42/79 (53%), Gaps = 9/79 (11%)

Query  18  HEISRATSPGGEPAGVNGEGEPK---------ARVRPRTYPYFKYLPYPIEDEAERERNL  68
            EISR TS G +    N E             AR RPRT+PYFK LPY +E   E+ + L
Sbjct  3   IEISRLTSYGLDYPEDNEEHLKNIYDPNSKWFARYRPRTFPYFKLLPYKVESHKEQAKYL  62

Query  69  REILNQLYIAVEAGDFSPG  87
             IL  LYIA+++ DF  G
Sbjct  63  CHILKNLYIAIKSLDFQGG  81



Lambda      K        H        a         alpha
   0.320    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00031036

Length=1965
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465150 pfam16507, BLM10_mid, Proteasome-substrate-size regula...  736     0.0  
CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF343...  144     5e-41
CDD:435417 pfam16547, BLM10_N, Proteasome-substrate-size regulato...  108     1e-28


>CDD:465150 pfam16507, BLM10_mid, Proteasome-substrate-size regulator, mid 
region.  The ordered regions of the yeast BLM10 or PA200 (human 
homolog), full-length protein encode 32 HEAT repeat (HR)-like 
modules, each comprising two helices joined by a turn, 
with adjacent repeats connected by a linker. Whereas a standard 
HEAT repeat is composed of ~50 residues, the BLM10 HEAT 
repeats are highly variable. The length of helices ranges 
from 8 to 35 residues, turns range from 2 to 87 residues, and 
linkers range from 1 to 88 residues, with the longest linker, 
between HR21 and HR22, containing additional secondary 
structures (two strands and three helices). BLM10_mid is the 
middle ordered region of the three in BLM10. BLM10 is found 
to surround the proteasome entry pore in the 1.2 MDa complex 
of proteasome and BLM10 to form a largely closed dome that 
is expected to restrict access of potential substrates. Thus 
Blm10 and PA200 are predominantly nuclear and stimulate the 
degradation of model peptides, although they do not appear 
to stimulate the degradation of proteins, recognize ubiquitin, 
or utilize ATP.
Length=503

 Score = 736 bits (1903),  Expect = 0.0, Method: Composition-based stats.
 Identities = 253/529 (48%), Positives = 325/529 (61%), Gaps = 27/529 (5%)

Query  375  LEGLIQAVETFFHPSNSGGWTKTLSQLVYYLSDFFLMRWNREQSGEMEVPIGRRLTEPLK  434
            LE LIQ++ETFFHPSNSG WTK LS+ V+YL   F  RWN E+  + + P  RRLT  +K
Sbjct  1    LEKLIQSIETFFHPSNSGSWTKPLSKFVHYLIKQFHKRWNEEEKPDCKTPEERRLTPAIK  60

Query  435  RRFVLCLRDVVFMGIYAKSGTAISFSLSTLQNLAFLEPHLILPGALQRIYPSLQGLVEVH  494
            + FVL LR V+ +GI++K     ++  S LQ LA+LEP LILPG L+RIYPSL+GL E H
Sbjct  61   KEFVLILRPVLLLGIFSKDSDVANYYQSALQYLAYLEPDLILPGILERIYPSLEGLNETH  120

Query  495  RTASSLRALQVLSRIISRTKGYRCHLTTLLGLALPGIDANDLEKTLHALSFIQSACYNIP  554
            RT +SL+AL  L+R +  TK YR HLT LL L LPGID NDL KT + L+FI S    IP
Sbjct  121  RTIASLKALTRLARFLVSTKLYRVHLTPLLSLLLPGIDLNDLSKTSNTLNFIVSIASFIP  180

Query  555  LFDLTKGREDINCDMLAMQWINGEMGRMEAEGAEVQLNYDTDLSDENEEMILRSSTCGFG  614
              DLTK  +                     EG + + + D +L DE E+  LRSST GF 
Sbjct  181  FGDLTKDND---------------------EGDDEEDDEDFELDDELEDNALRSSTTGFE  219

Query  615  DFIVSFLGRVFTLLENLPDASRVRNGSPEENIVNTLPATFMPLLSSLSPEYFDTALSKVV  674
            D++ SFL RVFTLLENLPD  +   G  EE ++N LP T   L  SLS E FD AL K  
Sbjct  220  DWLKSFLDRVFTLLENLPDEGKKTGGKLEEGVINKLPQTLDILFESLSDELFDLALDKFF  279

Query  675  DFVSNHVIHQARDAMAFICNSICKVNPDKALKRFIPVLTQAIRTEIDDNGAGSTRTTGTD  734
            DFVS +V H A DA+  IC ++ K +P+K LK+  P+L   IR EI + GA S RTT ++
Sbjct  280  DFVSTNVKHNAVDAVGIICAALVKRDPEKTLKKLFPLLIANIREEI-EEGASSRRTT-SE  337

Query  735  VLPRDRALVWNISMLSMCVVHVGDAVLAHRKELFDIAVYMQQKCRGIP-TVHISNFIHHL  793
            +LPRDRALVWN+S+L+ CV + G A+L ++ EL ++  Y+ +KC+G P  V  S  +H L
Sbjct  338  ILPRDRALVWNLSILNGCVRNSGSALLKYKDELLELLKYLYEKCKGPPGYVLTSILVHSL  397

Query  794  LLNLTGTYTIDYSLYEPEVLAEGITPKLWSYQPDPDNLTVKWHVPKREELEFAVELFQDQ  853
            L  LT TY  +Y L+ P+        + W      +NL + WHVP  EE++FAVELF+  
Sbjct  398  LSTLTSTYPTEYRLFNPDEWKSPFDEEHWGKLQFDENLKIDWHVPSEEEIDFAVELFESI  457

Query  854  AETALRSLTALTNGTASVKRDGSGKDWSDEVSRNLVLLRLILSGISVLF  902
               AL  L AL        R GS K+WSD+  R L+ LR  LSGIS LF
Sbjct  458  VSPALDKLEALMKEM---SRPGSDKEWSDDFCRYLLYLRHALSGISTLF  503


>CDD:463397 pfam11919, DUF3437, Domain of unknown function (DUF3437).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
142 to 163 amino acids in length.
Length=86

 Score = 144 bits (365),  Expect = 5e-41, Method: Composition-based stats.
 Identities = 54/89 (61%), Positives = 65/89 (73%), Gaps = 4/89 (4%)

Query  1877  IVRHGAVLGLGALIQAFPYDSPPPRWMPEALTTLSNRAASDPGIVGSSVKSIISDFKKTR  1936
             I RHGAVLGLGAL+ AFPYD PP  W+PE L+ L++ A SDP  +G +VK  +S+FK+T 
Sbjct  1     IRRHGAVLGLGALVLAFPYDVPP--WVPEVLSELASHA-SDPAPIGKTVKKTLSEFKRTH  57

Query  1937  QDTWHIDAKAFTPDQLEDLSGVL-WKSYF  1964
             QDTW  D K FT DQLEDL  VL W SY+
Sbjct  58    QDTWEEDKKKFTEDQLEDLEDVLSWPSYY  86


>CDD:435417 pfam16547, BLM10_N, Proteasome-substrate-size regulator, N-terminal. 
 The ordered regions of the yeast BLM10 or PA200 (human 
homolog), full-length protein encode 32 HEAT repeat (HR)-like 
modules, each comprising two helices joined by a turn, 
with adjacent repeats connected by a linker. Whereas a standard 
HEAT repeat is composed of ~50 residues, the BLM10 HEAT 
repeats are highly variable. The length of helices ranges from 
8 to 35 residues, turns range from 2 to 87 residues, and 
linkers range from 1 to 88 residues, with the longest linker, 
between HR21 and HR22, containing additional secondary structures 
(two strands and three helices). BLM10_N is the N-terminal 
ordered region of the three in BLM10. BLM10 is found 
to surround the proteasome entry pore in the 1.2 MDa complex 
of proteasome and BLM10 to form a largely closed dome that 
is expected to restrict access of potential substrates. BLM10 
and PA200 are predominantly nuclear and stimulate the degradation 
of model peptides, although they do not appear to stimulate 
the degradation of proteins, recognize ubiquitin, or 
utilize ATP.
Length=81

 Score = 108 bits (273),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 42/79 (53%), Gaps = 9/79 (11%)

Query  18  HEISRATSPGGEPAGVNGEGEPK---------ARVRPRTYPYFKYLPYPIEDEAERERNL  68
            EISR TS G +    N E             AR RPRT+PYFK LPY +E   E+ + L
Sbjct  3   IEISRLTSYGLDYPEDNEEHLKNIYDPNSKWFARYRPRTFPYFKLLPYKVESHKEQAKYL  62

Query  69  REILNQLYIAVEAGDFSPG  87
             IL  LYIA+++ DF  G
Sbjct  63  CHILKNLYIAIKSLDFQGG  81



Lambda      K        H        a         alpha
   0.321    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2456166704


Query= TCONS_00031037

Length=857
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460232 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit fa...  1233    0.0  


>CDD:460232 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family.  
This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) 
subunits, as well as V-type ATP synthase subunit 
i. The V-type ATPases family are proton pumps that acidify 
intracellular compartments in eukaryotic cells for example 
yeast central vacuoles, clathrin-coated and synaptic vesicles. 
They have important roles in membrane trafficking processes. 
The 116kDa subunit (subunit a) in the V-type ATPase is part 
of the V0 functional domain responsible for proton transport. 
The a subunit is a transmembrane glycoprotein with multiple 
putative transmembrane helices it has a hydrophilic amino 
terminal and a hydrophobic carboxy terminal. It has roles 
in proton transport and assembly of the V-type ATPase complex. 
This subunit is encoded by two homologous gene in yeast 
VPH1 and STV1.
Length=748

 Score = 1233 bits (3192),  Expect = 0.0, Method: Composition-based stats.
 Identities = 425/823 (52%), Positives = 524/823 (64%), Gaps = 80/823 (10%)

Query  30   SALGELGQVQFRDLNPDTNAFQRTFTKEIRRLDNVERQLRYFQAQMDKAGIPMRSSTEFS  89
            S LGELG VQFRDLNPD NAFQRTF  EIRR D +ER+LR+F+ +++K  I     T   
Sbjct  1    SELGELGLVQFRDLNPDVNAFQRTFVNEIRRCDEMERKLRFFEEEIEKLDIIPIKDTLDL  60

Query  90   DTLAAPLASEIDELAERSESLEQRIASLNDSYETLKKREVELTEWRWVLREAGGFFDRAH  149
            +T  AP   EIDEL E+ E LE  +  LN++YETLK+   ELTE R VLR+A  FFDRA 
Sbjct  61   ETPEAPSPREIDELEEKLEKLENELRELNENYETLKRNYNELTELRHVLRKAQEFFDRAS  120

Query  150  THTDEIRQSFDNDEAPLLRDVEHQPSRGPNGDAQAHQSFLEMNIGFVAGVIPRDRIGAFE  209
               +EIR +                    + +        ++ +GFVAGVIPR+++ AFE
Sbjct  121  GEQEEIRAA------------------SSDQEEDNALLLDDVELGFVAGVIPREKVPAFE  162

Query  210  RILWRTLRGNLYMNQSEIPEPIIDPTTNEESHKNVFVIFAHGKHIISKIRKISESLGASL  269
            RILWR  RGNL++ Q+EI EP+ DP T EE  KNVF+IF HG+ ++ KI+KI ES GA+L
Sbjct  163  RILWRATRGNLFLRQAEIEEPLEDPVTGEEVEKNVFIIFFHGEQLLQKIKKICESFGATL  222

Query  270  YGVDENSELRRDQIHEVNTRLSDVGNVLRNTKNTLDAELTQIARSLAAWMIIVKKEKAVY  329
            Y   E++E RR+ + EVNTR+ D+  VL  T++    EL  IA +L  W I V+KEKA+Y
Sbjct  223  YPCPEDAEERREMLQEVNTRIEDLKTVLDQTEDHRRRELQAIASNLEEWKIFVRKEKAIY  282

Query  330  DTLNKFSYDQARKTLIAEAWCPTNSLALIKSTLQDVNDRAGLSVPTIVNQIRTNKTPPTY  389
             TLN F+YD  RK LIAE WCPT+ L  I+  L+   + +G SVP+I+N I+TNKTPPTY
Sbjct  283  HTLNLFNYDVTRKCLIAEGWCPTSDLEEIQQALRRATEESGSSVPSILNVIQTNKTPPTY  342

Query  390  VKTNKFTEAFQTIVNAYGIPKYSEANPGLYTVVTFPFLFAVMFGDFGHGALMAMAASAMI  449
             +TNKFTE FQ IV+AYGI +Y E NPGL+T++TFPFLFAVMFGD GHG ++ + A  +I
Sbjct  343  FRTNKFTEGFQNIVDAYGIARYREVNPGLFTIITFPFLFAVMFGDIGHGLILFLFALYLI  402

Query  450  FWERKLQKTKLDELTYMAFYGRYIMLMMGLFSMYTGLIYNDVFSKSFTVFPSQWKWP---  506
              E+KL+K KL+E+  M F GRYI+L+MGLFS+YTG IYND FSKS  +F S WKWP   
Sbjct  403  LNEKKLKKKKLNEIFDMFFGGRYIILLMGLFSIYTGFIYNDFFSKSLNLFGSGWKWPEMK  462

Query  507  DSIKKGQTVEASLTNSYRYPFGLDWNWHEAENSLLFTNSMKMKMSIILGWAHMTYALCLQ  566
            +     +           YPFGLD  WH AEN LLF NS KMK+SIILG  HMT+ +CL 
Sbjct  463  EGESIAKKNGYLTLFGCPYPFGLDPAWHGAENELLFLNSYKMKLSIILGVIHMTFGICLS  522

Query  567  YVNARHFKSKVDIIGNFIPGMIFFQSIFGYLVLTIIYKWSVNWEARGQSPPGLLNMLIFM  626
              N  +FKSK+DI   FIP ++F QSIFGYLV  IIYKW  +W A G   P LLNMLI M
Sbjct  523  LFNHIYFKSKLDIFFEFIPQLLFLQSIFGYLVFLIIYKWCTDW-ADGSPAPSLLNMLINM  581

Query  627  FLSPGTV--EEQLYKGQAGVQVVLLLLAVVQVPIMLFFKPFYLRWEHNRARALGYRGLGE  684
            FLSPGTV  EE LY GQA VQV+LLL+A++ VP ML  KP YL+ +H +           
Sbjct  582  FLSPGTVPPEEPLYPGQATVQVILLLIALICVPWMLLPKPLYLKRQHKK-----------  630

Query  685  HARVSALEDDTDMNGGVSGPRDSMASDGEGVAMIAQDLGDEEHEEFDFSEIMIHQVIHTI  744
                                                         FDF EI IHQVIHTI
Sbjct  631  ---------------------------------------------FDFGEIFIHQVIHTI  645

Query  745  EFCLNCISHTASYLRLWALSLAHQQLSIVLWDMTIGGAFEQESPTIRVIMIVVTFYLWFT  804
            EF L CIS+TASYLRLWALSLAH QLS VLW+MT+  A       + VIM+ + F +W  
Sbjct  646  EFVLGCISNTASYLRLWALSLAHAQLSEVLWEMTLRNAGLGMGGILGVIMLFIGFAVWAV  705

Query  805  LTIAILCVMEGTSAMLHSLRLHWVEAMSKHFMGDGIPFAPFSF  847
            LT+AIL VMEG SA LH+LRLHWVE  SK + GDG  F PFSF
Sbjct  706  LTVAILLVMEGLSAFLHALRLHWVEFQSKFYKGDGYKFEPFSF  748



Lambda      K        H        a         alpha
   0.322    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1093861668


Query= TCONS_00035347

Length=843
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460232 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit fa...  1146    0.0  


>CDD:460232 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family.  
This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) 
subunits, as well as V-type ATP synthase subunit 
i. The V-type ATPases family are proton pumps that acidify 
intracellular compartments in eukaryotic cells for example 
yeast central vacuoles, clathrin-coated and synaptic vesicles. 
They have important roles in membrane trafficking processes. 
The 116kDa subunit (subunit a) in the V-type ATPase is part 
of the V0 functional domain responsible for proton transport. 
The a subunit is a transmembrane glycoprotein with multiple 
putative transmembrane helices it has a hydrophilic amino 
terminal and a hydrophobic carboxy terminal. It has roles 
in proton transport and assembly of the V-type ATPase complex. 
This subunit is encoded by two homologous gene in yeast 
VPH1 and STV1.
Length=748

 Score = 1146 bits (2967),  Expect = 0.0, Method: Composition-based stats.
 Identities = 394/783 (50%), Positives = 491/783 (63%), Gaps = 80/783 (10%)

Query  56   YFQAQMDKAGIPMRSSTEFSDTLAAPLASEIDELAERSESLEQRIASLNDSYETLKKREV  115
            +F+ +++K  I     T   +T  AP   EIDEL E+ E LE  +  LN++YETLK+   
Sbjct  41   FFEEEIEKLDIIPIKDTLDLETPEAPSPREIDELEEKLEKLENELRELNENYETLKRNYN  100

Query  116  ELTEWRWVLREAGGFFDRAHTHTDEIRQSFDNDEAPLLRDVEHQPSRGPNGDAQAHQSFL  175
            ELTE R VLR+A  FFDRA    +EIR +                    + +        
Sbjct  101  ELTELRHVLRKAQEFFDRASGEQEEIRAA------------------SSDQEEDNALLLD  142

Query  176  EMNIGFVAGVIPRDRIGAFERILWRTLRGNLYMNQSEIPEPIIDPTTNEESHKNVFVIFA  235
            ++ +GFVAGVIPR+++ AFERILWR  RGNL++ Q+EI EP+ DP T EE  KNVF+IF 
Sbjct  143  DVELGFVAGVIPREKVPAFERILWRATRGNLFLRQAEIEEPLEDPVTGEEVEKNVFIIFF  202

Query  236  HGKHIISKIRKISESLGASLYGVDENSELRRDQIHEVNTRLSDVGNVLRNTKNTLDAELT  295
            HG+ ++ KI+KI ES GA+LY   E++E RR+ + EVNTR+ D+  VL  T++    EL 
Sbjct  203  HGEQLLQKIKKICESFGATLYPCPEDAEERREMLQEVNTRIEDLKTVLDQTEDHRRRELQ  262

Query  296  QIARSLAAWMIIVKKEKAVYDTLNKFSYDQARKTLIAEAWCPTNSLALIKSTLQDVNDRA  355
             IA +L  W I V+KEKA+Y TLN F+YD  RK LIAE WCPT+ L  I+  L+   + +
Sbjct  263  AIASNLEEWKIFVRKEKAIYHTLNLFNYDVTRKCLIAEGWCPTSDLEEIQQALRRATEES  322

Query  356  GLSVPTIVNQIRTNKTPPTYVKTNKFTEAFQTIVNAYGIPKYSEANPGLYTVVTFPFLFA  415
            G SVP+I+N I+TNKTPPTY +TNKFTE FQ IV+AYGI +Y E NPGL+T++TFPFLFA
Sbjct  323  GSSVPSILNVIQTNKTPPTYFRTNKFTEGFQNIVDAYGIARYREVNPGLFTIITFPFLFA  382

Query  416  VMFGDFGHGALMAMAASAMIFWERKLQKTKLDELTYMAFYGRYIMLMMGLFSMYTGLIYN  475
            VMFGD GHG ++ + A  +I  E+KL+K KL+E+  M F GRYI+L+MGLFS+YTG IYN
Sbjct  383  VMFGDIGHGLILFLFALYLILNEKKLKKKKLNEIFDMFFGGRYIILLMGLFSIYTGFIYN  442

Query  476  DVFSKSFTVFPSQWKWP---DSIKKGQTVEASLTNSYRYPFGLDWNWHEAENSLLFTNSM  532
            D FSKS  +F S WKWP   +     +           YPFGLD  WH AEN LLF NS 
Sbjct  443  DFFSKSLNLFGSGWKWPEMKEGESIAKKNGYLTLFGCPYPFGLDPAWHGAENELLFLNSY  502

Query  533  KMKMSIILGWAHMTYALCLQYVNARHFKSKVDIIGNFIPGMIFFQSIFGYLVLTIIYKWS  592
            KMK+SIILG  HMT+ +CL   N  +FKSK+DI   FIP ++F QSIFGYLV  IIYKW 
Sbjct  503  KMKLSIILGVIHMTFGICLSLFNHIYFKSKLDIFFEFIPQLLFLQSIFGYLVFLIIYKWC  562

Query  593  VNWEARGQSPPGLLNMLIFMFLSPGTV--EEQLYKGQAGVQVVLLLLAVVQVPIMLFFKP  650
             +W A G   P LLNMLI MFLSPGTV  EE LY GQA VQV+LLL+A++ VP ML  KP
Sbjct  563  TDW-ADGSPAPSLLNMLINMFLSPGTVPPEEPLYPGQATVQVILLLIALICVPWMLLPKP  621

Query  651  FYLRWEHNRARALGYRGLGEHARVSALEDDTDMNGGVSGPRDSMASDGEGVAMIAQDLGD  710
             YL+ +H +                                                   
Sbjct  622  LYLKRQHKK---------------------------------------------------  630

Query  711  EEHEEFDFSEIMIHQVIHTIEFCLNCISHTASYLRLWALSLAHQQLSIVLWDMTIGGAFE  770
                 FDF EI IHQVIHTIEF L CIS+TASYLRLWALSLAH QLS VLW+MT+  A  
Sbjct  631  -----FDFGEIFIHQVIHTIEFVLGCISNTASYLRLWALSLAHAQLSEVLWEMTLRNAGL  685

Query  771  QESPTIRVIMIVVTFYLWFTLTIAILCVMEGTSAMLHSLRLHWVEAMSKHFMGDGIPFAP  830
                 + VIM+ + F +W  LT+AIL VMEG SA LH+LRLHWVE  SK + GDG  F P
Sbjct  686  GMGGILGVIMLFIGFAVWAVLTVAILLVMEGLSAFLHALRLHWVEFQSKFYKGDGYKFEP  745

Query  831  FSF  833
            FSF
Sbjct  746  FSF  748



Lambda      K        H        a         alpha
   0.323    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1073764472


Query= TCONS_00031039

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460232 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit fa...  827     0.0  


>CDD:460232 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family.  
This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) 
subunits, as well as V-type ATP synthase subunit 
i. The V-type ATPases family are proton pumps that acidify 
intracellular compartments in eukaryotic cells for example 
yeast central vacuoles, clathrin-coated and synaptic vesicles. 
They have important roles in membrane trafficking processes. 
The 116kDa subunit (subunit a) in the V-type ATPase is part 
of the V0 functional domain responsible for proton transport. 
The a subunit is a transmembrane glycoprotein with multiple 
putative transmembrane helices it has a hydrophilic amino 
terminal and a hydrophobic carboxy terminal. It has roles 
in proton transport and assembly of the V-type ATPase complex. 
This subunit is encoded by two homologous gene in yeast 
VPH1 and STV1.
Length=748

 Score = 827 bits (2140),  Expect = 0.0, Method: Composition-based stats.
 Identities = 279/532 (52%), Positives = 354/532 (67%), Gaps = 21/532 (4%)

Query  30   SALGELGQVQFRDLNPDTNAFQRTFTKEIRRLDNVERQLRYFQAQMDKAGIPMRSSTEFS  89
            S LGELG VQFRDLNPD NAFQRTF  EIRR D +ER+LR+F+ +++K  I     T   
Sbjct  1    SELGELGLVQFRDLNPDVNAFQRTFVNEIRRCDEMERKLRFFEEEIEKLDIIPIKDTLDL  60

Query  90   DTLAAPLASEIDELAERSESLEQRIASLNDSYETLKKREVELTEWRWVLREAGGFFDRAH  149
            +T  AP   EIDEL E+ E LE  +  LN++YETLK+   ELTE R VLR+A  FFDRA 
Sbjct  61   ETPEAPSPREIDELEEKLEKLENELRELNENYETLKRNYNELTELRHVLRKAQEFFDRAS  120

Query  150  THTDEIRQSFDNDEAPLLRDVEHQPSRGPNGDAQAHQSFLEMNIGFVAGVIPRDRIGAFE  209
               +EIR +                    + +        ++ +GFVAGVIPR+++ AFE
Sbjct  121  GEQEEIRAA------------------SSDQEEDNALLLDDVELGFVAGVIPREKVPAFE  162

Query  210  RILWRTLRGNLYMNQSEIPEPIIDPTTNEESHKNVFVIFAHGKHIISKIRKISESLGASL  269
            RILWR  RGNL++ Q+EI EP+ DP T EE  KNVF+IF HG+ ++ KI+KI ES GA+L
Sbjct  163  RILWRATRGNLFLRQAEIEEPLEDPVTGEEVEKNVFIIFFHGEQLLQKIKKICESFGATL  222

Query  270  YGVDENSELRRDQIHEVNTRLSDVGNVLRNTKNTLDAELTQIARSLAAWMIIVKKEKAVY  329
            Y   E++E RR+ + EVNTR+ D+  VL  T++    EL  IA +L  W I V+KEKA+Y
Sbjct  223  YPCPEDAEERREMLQEVNTRIEDLKTVLDQTEDHRRRELQAIASNLEEWKIFVRKEKAIY  282

Query  330  DTLNKFSYDQARKTLIAEAWCPTNSLALIKSTLQDVNDRAGLSVPTIVNQIRTNKTPPTY  389
             TLN F+YD  RK LIAE WCPT+ L  I+  L+   + +G SVP+I+N I+TNKTPPTY
Sbjct  283  HTLNLFNYDVTRKCLIAEGWCPTSDLEEIQQALRRATEESGSSVPSILNVIQTNKTPPTY  342

Query  390  VKTNKFTEAFQTIVNAYGIPKYSEANPGLYTVVTFPFLFAVMFGDFGHGALMAMAASAMI  449
             +TNKFTE FQ IV+AYGI +Y E NPGL+T++TFPFLFAVMFGD GHG ++ + A  +I
Sbjct  343  FRTNKFTEGFQNIVDAYGIARYREVNPGLFTIITFPFLFAVMFGDIGHGLILFLFALYLI  402

Query  450  FWERKLQKTKLDELTYMAFYGRYIMLMMGLFSMYTGLIYNDVFSKSFTVFPSQWKWP---  506
              E+KL+K KL+E+  M F GRYI+L+MGLFS+YTG IYND FSKS  +F S WKWP   
Sbjct  403  LNEKKLKKKKLNEIFDMFFGGRYIILLMGLFSIYTGFIYNDFFSKSLNLFGSGWKWPEMK  462

Query  507  DSIKKGQTVEASLTNSYRYPFGLDWNWHEAENSLLFTNSMKMKMSIILGWAH  558
            +     +           YPFGLD  WH AEN LLF NS KMK+SIILG  H
Sbjct  463  EGESIAKKNGYLTLFGCPYPFGLDPAWHGAENELLFLNSYKMKLSIILGVIH  514



Lambda      K        H        a         alpha
   0.319    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 714336584


Query= TCONS_00031038

Length=843
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460232 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit fa...  1141    0.0  


>CDD:460232 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family.  
This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) 
subunits, as well as V-type ATP synthase subunit 
i. The V-type ATPases family are proton pumps that acidify 
intracellular compartments in eukaryotic cells for example 
yeast central vacuoles, clathrin-coated and synaptic vesicles. 
They have important roles in membrane trafficking processes. 
The 116kDa subunit (subunit a) in the V-type ATPase is part 
of the V0 functional domain responsible for proton transport. 
The a subunit is a transmembrane glycoprotein with multiple 
putative transmembrane helices it has a hydrophilic amino 
terminal and a hydrophobic carboxy terminal. It has roles 
in proton transport and assembly of the V-type ATPase complex. 
This subunit is encoded by two homologous gene in yeast 
VPH1 and STV1.
Length=748

 Score = 1141 bits (2954),  Expect = 0.0, Method: Composition-based stats.
 Identities = 393/783 (50%), Positives = 491/783 (63%), Gaps = 80/783 (10%)

Query  56   YFQAQMDKAGIPMRSSTEFSDTLAAPLASEIDELAERSESLEQRIASLNDSYETLKKREV  115
            +F+ +++K  I     T   +T  AP   EIDEL E+ E LE  +  LN++YETLK+   
Sbjct  41   FFEEEIEKLDIIPIKDTLDLETPEAPSPREIDELEEKLEKLENELRELNENYETLKRNYN  100

Query  116  ELTEWRWVLREAGGFFDRAHTHTDEIRQSFDNDEAPLLRDVEHQPSRGPNGDAQAHQSFL  175
            ELTE R VLR+A  FFDRA    +EIR +                    + +        
Sbjct  101  ELTELRHVLRKAQEFFDRASGEQEEIRAA------------------SSDQEEDNALLLD  142

Query  176  EMNIGFVAGVIPRDRIGAFERILWRTLRGNLYMNQSEIPEPIIDPTTNEESHKNVFVIFA  235
            ++ +GFVAGVIPR+++ AFERILWR  RGNL++ Q+EI EP+ DP T EE  KNVF+IF 
Sbjct  143  DVELGFVAGVIPREKVPAFERILWRATRGNLFLRQAEIEEPLEDPVTGEEVEKNVFIIFF  202

Query  236  HGKHIISKIRKISESLGASLYGVDENSELRRDQIHEVNTRLSDVGNVLRNTKNTLDAELT  295
            HG+ ++ KI+KI ES GA+LY   E++E RR+ + EVNTR+ D+  VL  T++    EL 
Sbjct  203  HGEQLLQKIKKICESFGATLYPCPEDAEERREMLQEVNTRIEDLKTVLDQTEDHRRRELQ  262

Query  296  QIARSLAAWMIIVKKEKAVYDTLNKFSYDQARKTLIAEAWCPTNSLALIKSTLQDVNDRA  355
             IA +L  W I V+KEKA+Y TLN F+YD  RK LIAE WCPT+ L  I+  L+   + +
Sbjct  263  AIASNLEEWKIFVRKEKAIYHTLNLFNYDVTRKCLIAEGWCPTSDLEEIQQALRRATEES  322

Query  356  GLSVPTIVNQIRTNKTPPTYVKTNKFTEAFQTIVNAYGIPKYSEANPGLYTVVTFPFLFA  415
            G SVP+I+N I+TNKTPPTY +TNKFTE FQ IV+AYGI +Y E NPGL+T++TFPFLFA
Sbjct  323  GSSVPSILNVIQTNKTPPTYFRTNKFTEGFQNIVDAYGIARYREVNPGLFTIITFPFLFA  382

Query  416  VMFGDFGHGALMAMAASAMIFWERKLQKTKLDELTYMAFYGRYIMLMMGLFSMYTGLIYN  475
            VMFGD GHG ++ + A  +I  E+KL+K KL+E+  M F GRYI+L+MGLFS+YTG IYN
Sbjct  383  VMFGDIGHGLILFLFALYLILNEKKLKKKKLNEIFDMFFGGRYIILLMGLFSIYTGFIYN  442

Query  476  DVFSKSFTVFPSQWKWP---DSIKKGQTVEASLTNSYRYPFGLDWNWHEAENSLLFTNSM  532
            D FSKS  +F S WKWP   +     +           YPFGLD  WH AEN LLF NS 
Sbjct  443  DFFSKSLNLFGSGWKWPEMKEGESIAKKNGYLTLFGCPYPFGLDPAWHGAENELLFLNSY  502

Query  533  KMKMSIILGWAHVTYALCLQYVNARHFKSKVDIIGNFIPGMIFFQSIFGYLVLTIIYKWS  592
            KMK+SIILG  H+T+ +CL   N  +FKSK+DI   FIP ++F QSIFGYLV  IIYKW 
Sbjct  503  KMKLSIILGVIHMTFGICLSLFNHIYFKSKLDIFFEFIPQLLFLQSIFGYLVFLIIYKWC  562

Query  593  VNWEARGQSPPGLLNMLIFMFLSPGTV--EEQLYKGQAGVQVVLLLLAVVQVPIMLFFKP  650
             +W A G   P LLNMLI MFLSPGTV  EE LY GQA VQV+LLL+A++ VP ML  KP
Sbjct  563  TDW-ADGSPAPSLLNMLINMFLSPGTVPPEEPLYPGQATVQVILLLIALICVPWMLLPKP  621

Query  651  FYLRWEHNRARALGYRGLGEHARVSALEDDTDMNGGVSGPRDSMASDGEGVAMIAQDLGD  710
             YL+ +H +                                                   
Sbjct  622  LYLKRQHKK---------------------------------------------------  630

Query  711  EEHEEFDFSEIMIHQVIHTIEFCLNCISHTASYLRLWALSLAHQQLSIVLWDMTIGGAFE  770
                 FDF EI IHQVIHTIEF L CIS+TASYLRLWALSLAH QLS VLW+MT+  A  
Sbjct  631  -----FDFGEIFIHQVIHTIEFVLGCISNTASYLRLWALSLAHAQLSEVLWEMTLRNAGL  685

Query  771  QESPTIRVIMIVVTFYLWFTLTIAILCVMEGTSAMLHSLRLHWVEAMSKHFMGDGIPFAP  830
                 + VIM+ + F +W  LT+AIL VMEG SA LH+LRLHWVE  SK + GDG  F P
Sbjct  686  GMGGILGVIMLFIGFAVWAVLTVAILLVMEGLSAFLHALRLHWVEFQSKFYKGDGYKFEP  745

Query  831  FSF  833
            FSF
Sbjct  746  FSF  748



Lambda      K        H        a         alpha
   0.323    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1073764472


Query= TCONS_00035349

Length=857
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460232 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit fa...  1233    0.0  


>CDD:460232 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family.  
This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) 
subunits, as well as V-type ATP synthase subunit 
i. The V-type ATPases family are proton pumps that acidify 
intracellular compartments in eukaryotic cells for example 
yeast central vacuoles, clathrin-coated and synaptic vesicles. 
They have important roles in membrane trafficking processes. 
The 116kDa subunit (subunit a) in the V-type ATPase is part 
of the V0 functional domain responsible for proton transport. 
The a subunit is a transmembrane glycoprotein with multiple 
putative transmembrane helices it has a hydrophilic amino 
terminal and a hydrophobic carboxy terminal. It has roles 
in proton transport and assembly of the V-type ATPase complex. 
This subunit is encoded by two homologous gene in yeast 
VPH1 and STV1.
Length=748

 Score = 1233 bits (3192),  Expect = 0.0, Method: Composition-based stats.
 Identities = 425/823 (52%), Positives = 524/823 (64%), Gaps = 80/823 (10%)

Query  30   SALGELGQVQFRDLNPDTNAFQRTFTKEIRRLDNVERQLRYFQAQMDKAGIPMRSSTEFS  89
            S LGELG VQFRDLNPD NAFQRTF  EIRR D +ER+LR+F+ +++K  I     T   
Sbjct  1    SELGELGLVQFRDLNPDVNAFQRTFVNEIRRCDEMERKLRFFEEEIEKLDIIPIKDTLDL  60

Query  90   DTLAAPLASEIDELAERSESLEQRIASLNDSYETLKKREVELTEWRWVLREAGGFFDRAH  149
            +T  AP   EIDEL E+ E LE  +  LN++YETLK+   ELTE R VLR+A  FFDRA 
Sbjct  61   ETPEAPSPREIDELEEKLEKLENELRELNENYETLKRNYNELTELRHVLRKAQEFFDRAS  120

Query  150  THTDEIRQSFDNDEAPLLRDVEHQPSRGPNGDAQAHQSFLEMNIGFVAGVIPRDRIGAFE  209
               +EIR +                    + +        ++ +GFVAGVIPR+++ AFE
Sbjct  121  GEQEEIRAA------------------SSDQEEDNALLLDDVELGFVAGVIPREKVPAFE  162

Query  210  RILWRTLRGNLYMNQSEIPEPIIDPTTNEESHKNVFVIFAHGKHIISKIRKISESLGASL  269
            RILWR  RGNL++ Q+EI EP+ DP T EE  KNVF+IF HG+ ++ KI+KI ES GA+L
Sbjct  163  RILWRATRGNLFLRQAEIEEPLEDPVTGEEVEKNVFIIFFHGEQLLQKIKKICESFGATL  222

Query  270  YGVDENSELRRDQIHEVNTRLSDVGNVLRNTKNTLDAELTQIARSLAAWMIIVKKEKAVY  329
            Y   E++E RR+ + EVNTR+ D+  VL  T++    EL  IA +L  W I V+KEKA+Y
Sbjct  223  YPCPEDAEERREMLQEVNTRIEDLKTVLDQTEDHRRRELQAIASNLEEWKIFVRKEKAIY  282

Query  330  DTLNKFSYDQARKTLIAEAWCPTNSLALIKSTLQDVNDRAGLSVPTIVNQIRTNKTPPTY  389
             TLN F+YD  RK LIAE WCPT+ L  I+  L+   + +G SVP+I+N I+TNKTPPTY
Sbjct  283  HTLNLFNYDVTRKCLIAEGWCPTSDLEEIQQALRRATEESGSSVPSILNVIQTNKTPPTY  342

Query  390  VKTNKFTEAFQTIVNAYGIPKYSEANPGLYTVVTFPFLFAVMFGDFGHGALMAMAASAMI  449
             +TNKFTE FQ IV+AYGI +Y E NPGL+T++TFPFLFAVMFGD GHG ++ + A  +I
Sbjct  343  FRTNKFTEGFQNIVDAYGIARYREVNPGLFTIITFPFLFAVMFGDIGHGLILFLFALYLI  402

Query  450  FWERKLQKTKLDELTYMAFYGRYIMLMMGLFSMYTGLIYNDVFSKSFTVFPSQWKWP---  506
              E+KL+K KL+E+  M F GRYI+L+MGLFS+YTG IYND FSKS  +F S WKWP   
Sbjct  403  LNEKKLKKKKLNEIFDMFFGGRYIILLMGLFSIYTGFIYNDFFSKSLNLFGSGWKWPEMK  462

Query  507  DSIKKGQTVEASLTNSYRYPFGLDWNWHEAENSLLFTNSMKMKMSIILGWAHMTYALCLQ  566
            +     +           YPFGLD  WH AEN LLF NS KMK+SIILG  HMT+ +CL 
Sbjct  463  EGESIAKKNGYLTLFGCPYPFGLDPAWHGAENELLFLNSYKMKLSIILGVIHMTFGICLS  522

Query  567  YVNARHFKSKVDIIGNFIPGMIFFQSIFGYLVLTIIYKWSVNWEARGQSPPGLLNMLIFM  626
              N  +FKSK+DI   FIP ++F QSIFGYLV  IIYKW  +W A G   P LLNMLI M
Sbjct  523  LFNHIYFKSKLDIFFEFIPQLLFLQSIFGYLVFLIIYKWCTDW-ADGSPAPSLLNMLINM  581

Query  627  FLSPGTV--EEQLYKGQAGVQVVLLLLAVVQVPIMLFFKPFYLRWEHNRARALGYRGLGE  684
            FLSPGTV  EE LY GQA VQV+LLL+A++ VP ML  KP YL+ +H +           
Sbjct  582  FLSPGTVPPEEPLYPGQATVQVILLLIALICVPWMLLPKPLYLKRQHKK-----------  630

Query  685  HARVSALEDDTDMNGGVSGPRDSMASDGEGVAMIAQDLGDEEHEEFDFSEIMIHQVIHTI  744
                                                         FDF EI IHQVIHTI
Sbjct  631  ---------------------------------------------FDFGEIFIHQVIHTI  645

Query  745  EFCLNCISHTASYLRLWALSLAHQQLSIVLWDMTIGGAFEQESPTIRVIMIVVTFYLWFT  804
            EF L CIS+TASYLRLWALSLAH QLS VLW+MT+  A       + VIM+ + F +W  
Sbjct  646  EFVLGCISNTASYLRLWALSLAHAQLSEVLWEMTLRNAGLGMGGILGVIMLFIGFAVWAV  705

Query  805  LTIAILCVMEGTSAMLHSLRLHWVEAMSKHFMGDGIPFAPFSF  847
            LT+AIL VMEG SA LH+LRLHWVE  SK + GDG  F PFSF
Sbjct  706  LTVAILLVMEGLSAFLHALRLHWVEFQSKFYKGDGYKFEPFSF  748



Lambda      K        H        a         alpha
   0.322    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1093861668


Query= TCONS_00035350

Length=857
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460232 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit fa...  1233    0.0  


>CDD:460232 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family.  
This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) 
subunits, as well as V-type ATP synthase subunit 
i. The V-type ATPases family are proton pumps that acidify 
intracellular compartments in eukaryotic cells for example 
yeast central vacuoles, clathrin-coated and synaptic vesicles. 
They have important roles in membrane trafficking processes. 
The 116kDa subunit (subunit a) in the V-type ATPase is part 
of the V0 functional domain responsible for proton transport. 
The a subunit is a transmembrane glycoprotein with multiple 
putative transmembrane helices it has a hydrophilic amino 
terminal and a hydrophobic carboxy terminal. It has roles 
in proton transport and assembly of the V-type ATPase complex. 
This subunit is encoded by two homologous gene in yeast 
VPH1 and STV1.
Length=748

 Score = 1233 bits (3192),  Expect = 0.0, Method: Composition-based stats.
 Identities = 425/823 (52%), Positives = 524/823 (64%), Gaps = 80/823 (10%)

Query  30   SALGELGQVQFRDLNPDTNAFQRTFTKEIRRLDNVERQLRYFQAQMDKAGIPMRSSTEFS  89
            S LGELG VQFRDLNPD NAFQRTF  EIRR D +ER+LR+F+ +++K  I     T   
Sbjct  1    SELGELGLVQFRDLNPDVNAFQRTFVNEIRRCDEMERKLRFFEEEIEKLDIIPIKDTLDL  60

Query  90   DTLAAPLASEIDELAERSESLEQRIASLNDSYETLKKREVELTEWRWVLREAGGFFDRAH  149
            +T  AP   EIDEL E+ E LE  +  LN++YETLK+   ELTE R VLR+A  FFDRA 
Sbjct  61   ETPEAPSPREIDELEEKLEKLENELRELNENYETLKRNYNELTELRHVLRKAQEFFDRAS  120

Query  150  THTDEIRQSFDNDEAPLLRDVEHQPSRGPNGDAQAHQSFLEMNIGFVAGVIPRDRIGAFE  209
               +EIR +                    + +        ++ +GFVAGVIPR+++ AFE
Sbjct  121  GEQEEIRAA------------------SSDQEEDNALLLDDVELGFVAGVIPREKVPAFE  162

Query  210  RILWRTLRGNLYMNQSEIPEPIIDPTTNEESHKNVFVIFAHGKHIISKIRKISESLGASL  269
            RILWR  RGNL++ Q+EI EP+ DP T EE  KNVF+IF HG+ ++ KI+KI ES GA+L
Sbjct  163  RILWRATRGNLFLRQAEIEEPLEDPVTGEEVEKNVFIIFFHGEQLLQKIKKICESFGATL  222

Query  270  YGVDENSELRRDQIHEVNTRLSDVGNVLRNTKNTLDAELTQIARSLAAWMIIVKKEKAVY  329
            Y   E++E RR+ + EVNTR+ D+  VL  T++    EL  IA +L  W I V+KEKA+Y
Sbjct  223  YPCPEDAEERREMLQEVNTRIEDLKTVLDQTEDHRRRELQAIASNLEEWKIFVRKEKAIY  282

Query  330  DTLNKFSYDQARKTLIAEAWCPTNSLALIKSTLQDVNDRAGLSVPTIVNQIRTNKTPPTY  389
             TLN F+YD  RK LIAE WCPT+ L  I+  L+   + +G SVP+I+N I+TNKTPPTY
Sbjct  283  HTLNLFNYDVTRKCLIAEGWCPTSDLEEIQQALRRATEESGSSVPSILNVIQTNKTPPTY  342

Query  390  VKTNKFTEAFQTIVNAYGIPKYSEANPGLYTVVTFPFLFAVMFGDFGHGALMAMAASAMI  449
             +TNKFTE FQ IV+AYGI +Y E NPGL+T++TFPFLFAVMFGD GHG ++ + A  +I
Sbjct  343  FRTNKFTEGFQNIVDAYGIARYREVNPGLFTIITFPFLFAVMFGDIGHGLILFLFALYLI  402

Query  450  FWERKLQKTKLDELTYMAFYGRYIMLMMGLFSMYTGLIYNDVFSKSFTVFPSQWKWP---  506
              E+KL+K KL+E+  M F GRYI+L+MGLFS+YTG IYND FSKS  +F S WKWP   
Sbjct  403  LNEKKLKKKKLNEIFDMFFGGRYIILLMGLFSIYTGFIYNDFFSKSLNLFGSGWKWPEMK  462

Query  507  DSIKKGQTVEASLTNSYRYPFGLDWNWHEAENSLLFTNSMKMKMSIILGWAHMTYALCLQ  566
            +     +           YPFGLD  WH AEN LLF NS KMK+SIILG  HMT+ +CL 
Sbjct  463  EGESIAKKNGYLTLFGCPYPFGLDPAWHGAENELLFLNSYKMKLSIILGVIHMTFGICLS  522

Query  567  YVNARHFKSKVDIIGNFIPGMIFFQSIFGYLVLTIIYKWSVNWEARGQSPPGLLNMLIFM  626
              N  +FKSK+DI   FIP ++F QSIFGYLV  IIYKW  +W A G   P LLNMLI M
Sbjct  523  LFNHIYFKSKLDIFFEFIPQLLFLQSIFGYLVFLIIYKWCTDW-ADGSPAPSLLNMLINM  581

Query  627  FLSPGTV--EEQLYKGQAGVQVVLLLLAVVQVPIMLFFKPFYLRWEHNRARALGYRGLGE  684
            FLSPGTV  EE LY GQA VQV+LLL+A++ VP ML  KP YL+ +H +           
Sbjct  582  FLSPGTVPPEEPLYPGQATVQVILLLIALICVPWMLLPKPLYLKRQHKK-----------  630

Query  685  HARVSALEDDTDMNGGVSGPRDSMASDGEGVAMIAQDLGDEEHEEFDFSEIMIHQVIHTI  744
                                                         FDF EI IHQVIHTI
Sbjct  631  ---------------------------------------------FDFGEIFIHQVIHTI  645

Query  745  EFCLNCISHTASYLRLWALSLAHQQLSIVLWDMTIGGAFEQESPTIRVIMIVVTFYLWFT  804
            EF L CIS+TASYLRLWALSLAH QLS VLW+MT+  A       + VIM+ + F +W  
Sbjct  646  EFVLGCISNTASYLRLWALSLAHAQLSEVLWEMTLRNAGLGMGGILGVIMLFIGFAVWAV  705

Query  805  LTIAILCVMEGTSAMLHSLRLHWVEAMSKHFMGDGIPFAPFSF  847
            LT+AIL VMEG SA LH+LRLHWVE  SK + GDG  F PFSF
Sbjct  706  LTVAILLVMEGLSAFLHALRLHWVEFQSKFYKGDGYKFEPFSF  748



Lambda      K        H        a         alpha
   0.322    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1093861668


Query= TCONS_00031040

Length=857
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460232 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit fa...  1233    0.0  


>CDD:460232 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family.  
This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) 
subunits, as well as V-type ATP synthase subunit 
i. The V-type ATPases family are proton pumps that acidify 
intracellular compartments in eukaryotic cells for example 
yeast central vacuoles, clathrin-coated and synaptic vesicles. 
They have important roles in membrane trafficking processes. 
The 116kDa subunit (subunit a) in the V-type ATPase is part 
of the V0 functional domain responsible for proton transport. 
The a subunit is a transmembrane glycoprotein with multiple 
putative transmembrane helices it has a hydrophilic amino 
terminal and a hydrophobic carboxy terminal. It has roles 
in proton transport and assembly of the V-type ATPase complex. 
This subunit is encoded by two homologous gene in yeast 
VPH1 and STV1.
Length=748

 Score = 1233 bits (3192),  Expect = 0.0, Method: Composition-based stats.
 Identities = 425/823 (52%), Positives = 524/823 (64%), Gaps = 80/823 (10%)

Query  30   SALGELGQVQFRDLNPDTNAFQRTFTKEIRRLDNVERQLRYFQAQMDKAGIPMRSSTEFS  89
            S LGELG VQFRDLNPD NAFQRTF  EIRR D +ER+LR+F+ +++K  I     T   
Sbjct  1    SELGELGLVQFRDLNPDVNAFQRTFVNEIRRCDEMERKLRFFEEEIEKLDIIPIKDTLDL  60

Query  90   DTLAAPLASEIDELAERSESLEQRIASLNDSYETLKKREVELTEWRWVLREAGGFFDRAH  149
            +T  AP   EIDEL E+ E LE  +  LN++YETLK+   ELTE R VLR+A  FFDRA 
Sbjct  61   ETPEAPSPREIDELEEKLEKLENELRELNENYETLKRNYNELTELRHVLRKAQEFFDRAS  120

Query  150  THTDEIRQSFDNDEAPLLRDVEHQPSRGPNGDAQAHQSFLEMNIGFVAGVIPRDRIGAFE  209
               +EIR +                    + +        ++ +GFVAGVIPR+++ AFE
Sbjct  121  GEQEEIRAA------------------SSDQEEDNALLLDDVELGFVAGVIPREKVPAFE  162

Query  210  RILWRTLRGNLYMNQSEIPEPIIDPTTNEESHKNVFVIFAHGKHIISKIRKISESLGASL  269
            RILWR  RGNL++ Q+EI EP+ DP T EE  KNVF+IF HG+ ++ KI+KI ES GA+L
Sbjct  163  RILWRATRGNLFLRQAEIEEPLEDPVTGEEVEKNVFIIFFHGEQLLQKIKKICESFGATL  222

Query  270  YGVDENSELRRDQIHEVNTRLSDVGNVLRNTKNTLDAELTQIARSLAAWMIIVKKEKAVY  329
            Y   E++E RR+ + EVNTR+ D+  VL  T++    EL  IA +L  W I V+KEKA+Y
Sbjct  223  YPCPEDAEERREMLQEVNTRIEDLKTVLDQTEDHRRRELQAIASNLEEWKIFVRKEKAIY  282

Query  330  DTLNKFSYDQARKTLIAEAWCPTNSLALIKSTLQDVNDRAGLSVPTIVNQIRTNKTPPTY  389
             TLN F+YD  RK LIAE WCPT+ L  I+  L+   + +G SVP+I+N I+TNKTPPTY
Sbjct  283  HTLNLFNYDVTRKCLIAEGWCPTSDLEEIQQALRRATEESGSSVPSILNVIQTNKTPPTY  342

Query  390  VKTNKFTEAFQTIVNAYGIPKYSEANPGLYTVVTFPFLFAVMFGDFGHGALMAMAASAMI  449
             +TNKFTE FQ IV+AYGI +Y E NPGL+T++TFPFLFAVMFGD GHG ++ + A  +I
Sbjct  343  FRTNKFTEGFQNIVDAYGIARYREVNPGLFTIITFPFLFAVMFGDIGHGLILFLFALYLI  402

Query  450  FWERKLQKTKLDELTYMAFYGRYIMLMMGLFSMYTGLIYNDVFSKSFTVFPSQWKWP---  506
              E+KL+K KL+E+  M F GRYI+L+MGLFS+YTG IYND FSKS  +F S WKWP   
Sbjct  403  LNEKKLKKKKLNEIFDMFFGGRYIILLMGLFSIYTGFIYNDFFSKSLNLFGSGWKWPEMK  462

Query  507  DSIKKGQTVEASLTNSYRYPFGLDWNWHEAENSLLFTNSMKMKMSIILGWAHMTYALCLQ  566
            +     +           YPFGLD  WH AEN LLF NS KMK+SIILG  HMT+ +CL 
Sbjct  463  EGESIAKKNGYLTLFGCPYPFGLDPAWHGAENELLFLNSYKMKLSIILGVIHMTFGICLS  522

Query  567  YVNARHFKSKVDIIGNFIPGMIFFQSIFGYLVLTIIYKWSVNWEARGQSPPGLLNMLIFM  626
              N  +FKSK+DI   FIP ++F QSIFGYLV  IIYKW  +W A G   P LLNMLI M
Sbjct  523  LFNHIYFKSKLDIFFEFIPQLLFLQSIFGYLVFLIIYKWCTDW-ADGSPAPSLLNMLINM  581

Query  627  FLSPGTV--EEQLYKGQAGVQVVLLLLAVVQVPIMLFFKPFYLRWEHNRARALGYRGLGE  684
            FLSPGTV  EE LY GQA VQV+LLL+A++ VP ML  KP YL+ +H +           
Sbjct  582  FLSPGTVPPEEPLYPGQATVQVILLLIALICVPWMLLPKPLYLKRQHKK-----------  630

Query  685  HARVSALEDDTDMNGGVSGPRDSMASDGEGVAMIAQDLGDEEHEEFDFSEIMIHQVIHTI  744
                                                         FDF EI IHQVIHTI
Sbjct  631  ---------------------------------------------FDFGEIFIHQVIHTI  645

Query  745  EFCLNCISHTASYLRLWALSLAHQQLSIVLWDMTIGGAFEQESPTIRVIMIVVTFYLWFT  804
            EF L CIS+TASYLRLWALSLAH QLS VLW+MT+  A       + VIM+ + F +W  
Sbjct  646  EFVLGCISNTASYLRLWALSLAHAQLSEVLWEMTLRNAGLGMGGILGVIMLFIGFAVWAV  705

Query  805  LTIAILCVMEGTSAMLHSLRLHWVEAMSKHFMGDGIPFAPFSF  847
            LT+AIL VMEG SA LH+LRLHWVE  SK + GDG  F PFSF
Sbjct  706  LTVAILLVMEGLSAFLHALRLHWVEFQSKFYKGDGYKFEPFSF  748



Lambda      K        H        a         alpha
   0.322    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0658    0.140     1.90     42.6     43.6 

Effective search space used: 1093861668


Query= TCONS_00035351

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460232 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit fa...  732     0.0  


>CDD:460232 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family.  
This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) 
subunits, as well as V-type ATP synthase subunit 
i. The V-type ATPases family are proton pumps that acidify 
intracellular compartments in eukaryotic cells for example 
yeast central vacuoles, clathrin-coated and synaptic vesicles. 
They have important roles in membrane trafficking processes. 
The 116kDa subunit (subunit a) in the V-type ATPase is part 
of the V0 functional domain responsible for proton transport. 
The a subunit is a transmembrane glycoprotein with multiple 
putative transmembrane helices it has a hydrophilic amino 
terminal and a hydrophobic carboxy terminal. It has roles 
in proton transport and assembly of the V-type ATPase complex. 
This subunit is encoded by two homologous gene in yeast 
VPH1 and STV1.
Length=748

 Score = 732 bits (1893),  Expect = 0.0, Method: Composition-based stats.
 Identities = 247/487 (51%), Positives = 317/487 (65%), Gaps = 21/487 (4%)

Query  1    MDKAGIPMRSSTEFSDTLAAPLASEIDELAERSESLEQRIASLNDSYETLKKREVELTEW  60
            ++K  I     T   +T  AP   EIDEL E+ E LE  +  LN++YETLK+   ELTE 
Sbjct  46   IEKLDIIPIKDTLDLETPEAPSPREIDELEEKLEKLENELRELNENYETLKRNYNELTEL  105

Query  61   RWVLREAGGFFDRAHTHTDEIRQSFDNDEAPLLRDVEHQPSRGPNGDAQAHQSFLEMNIG  120
            R VLR+A  FFDRA    +EIR +                    + +        ++ +G
Sbjct  106  RHVLRKAQEFFDRASGEQEEIRAA------------------SSDQEEDNALLLDDVELG  147

Query  121  FVAGVIPRDRIGAFERILWRTLRGNLYMNQSEIPEPIIDPTTNEESHKNVFVIFAHGKHI  180
            FVAGVIPR+++ AFERILWR  RGNL++ Q+EI EP+ DP T EE  KNVF+IF HG+ +
Sbjct  148  FVAGVIPREKVPAFERILWRATRGNLFLRQAEIEEPLEDPVTGEEVEKNVFIIFFHGEQL  207

Query  181  ISKIRKISESLGASLYGVDENSELRRDQIHEVNTRLSDVGNVLRNTKNTLDAELTQIARS  240
            + KI+KI ES GA+LY   E++E RR+ + EVNTR+ D+  VL  T++    EL  IA +
Sbjct  208  LQKIKKICESFGATLYPCPEDAEERREMLQEVNTRIEDLKTVLDQTEDHRRRELQAIASN  267

Query  241  LAAWMIIVKKEKAVYDTLNKFSYDQARKTLIAEAWCPTNSLALIKSTLQDVNDRAGLSVP  300
            L  W I V+KEKA+Y TLN F+YD  RK LIAE WCPT+ L  I+  L+   + +G SVP
Sbjct  268  LEEWKIFVRKEKAIYHTLNLFNYDVTRKCLIAEGWCPTSDLEEIQQALRRATEESGSSVP  327

Query  301  TIVNQIRTNKTPPTYVKTNKFTEAFQTIVNAYGIPKYSEANPGLYTVVTFPFLFAVMFGD  360
            +I+N I+TNKTPPTY +TNKFTE FQ IV+AYGI +Y E NPGL+T++TFPFLFAVMFGD
Sbjct  328  SILNVIQTNKTPPTYFRTNKFTEGFQNIVDAYGIARYREVNPGLFTIITFPFLFAVMFGD  387

Query  361  FGHGALMAMAASAMIFWERKLQKTKLDELTYMAFYGRYIMLMMGLFSMYTGLIYNDVFSK  420
             GHG ++ + A  +I  E+KL+K KL+E+  M F GRYI+L+MGLFS+YTG IYND FSK
Sbjct  388  IGHGLILFLFALYLILNEKKLKKKKLNEIFDMFFGGRYIILLMGLFSIYTGFIYNDFFSK  447

Query  421  SFTVFPSQWKWP---DSIKKGQTVEASLTNSYRYPFGLDWNWHEAENSLLFTNSMKMKMS  477
            S  +F S WKWP   +     +           YPFGLD  WH AEN LLF NS KMK+S
Sbjct  448  SLNLFGSGWKWPEMKEGESIAKKNGYLTLFGCPYPFGLDPAWHGAENELLFLNSYKMKLS  507

Query  478  IILGWAH  484
            IILG  H
Sbjct  508  IILGVIH  514



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00031042

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425601 pfam00316, FBPase, Fructose-1-6-bisphosphatase, N-term...  230     2e-76
CDD:436826 pfam18913, FBPase_C, Fructose-1-6-bisphosphatase, C-te...  171     2e-54


>CDD:425601 pfam00316, FBPase, Fructose-1-6-bisphosphatase, N-terminal domain. 
 This family represents the N-terminus of this protein 
family.
Length=191

 Score = 230 bits (588),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 86/174 (49%), Positives = 116/174 (67%), Gaps = 4/174 (2%)

Query  5    RLLCHALQFSFKSIAYYIRRASLINLTGLAGSSNTTGDDQKKLDVIGNDIFVSAMRGSGK  64
              L  A+Q + K I+  IR+A L+NL GLAG+ N  GD QKKLDV+ +++  +A++ SG 
Sbjct  22   TTLLSAIQLAAKFISRDIRKAGLVNLLGLAGAENVQGDQQKKLDVLADELLKNALKASGI  81

Query  65   CRILVSEEEEQAIVFDEHPNARYAVVCDPIDGSSNLDAGVSVGTIFGIFKLPDELVGPNK  124
             ++LVSEEEE+ IVF+     +Y V  DP+DGSSN+D  VSVGTIF I++        + 
Sbjct  82   VKVLVSEEEEELIVFEPPKRGKYVVCFDPLDGSSNIDVNVSVGTIFSIYRRVSP---TDS  138

Query  125  KVTANDILRAGTEMVAAGFTMYGASAQLVITMRNGGVNGFTLENSLGEFILTHP  178
              T  D+L+ G E VAAG+ MYG+S  LV+T    GV+GFTL+ SLGEFILTH 
Sbjct  139  PTTIEDVLQPGNEQVAAGYAMYGSSTMLVLTT-GCGVHGFTLDPSLGEFILTHE  191


>CDD:436826 pfam18913, FBPase_C, Fructose-1-6-bisphosphatase, C-terminal 
domain.  This entry represents the C-terminal domain of Fructose-1-6-bisphosphatase 
enzymes. According to ECOD this domain 
has a Rossmann-like fold.
Length=125

 Score = 171 bits (436),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 61/126 (48%), Positives = 85/126 (67%), Gaps = 5/126 (4%)

Query  188  IYSVNEGNSMYWDDWVNEYFHSLKYPGEGQKPYSARYIGSMVADAYRTLLYGGVFAYPAD  247
            IY++NEGN+ +W+     Y   L       K Y+ RYIGSMVAD +R LL GG+F YPAD
Sbjct  5    IYAINEGNARFWNAPYRAYIDDLVSG----KGYTLRYIGSMVADVHRILLKGGIFLYPAD  60

Query  248  KKSTKGKLRILYECAPMAMLFENAGGLAINSRAERLLEVVPEHIHDRSGVFLGSKDEVQK  307
            ++S  GKLR+LYECAP+A L E AGG A +   +R+L++VP+ +H R+ +FLGS+DEV +
Sbjct  61   RRSPYGKLRLLYECAPLAFLIEQAGGKASDGT-QRILDIVPDSLHQRTPIFLGSRDEVAR  119

Query  308  IIDTYN  313
            +     
Sbjct  120  VEAYLK  125



Lambda      K        H        a         alpha
   0.318    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00035352

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425601 pfam00316, FBPase, Fructose-1-6-bisphosphatase, N-term...  230     2e-76
CDD:436826 pfam18913, FBPase_C, Fructose-1-6-bisphosphatase, C-te...  171     2e-54


>CDD:425601 pfam00316, FBPase, Fructose-1-6-bisphosphatase, N-terminal domain. 
 This family represents the N-terminus of this protein 
family.
Length=191

 Score = 230 bits (588),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 86/174 (49%), Positives = 116/174 (67%), Gaps = 4/174 (2%)

Query  5    RLLCHALQFSFKSIAYYIRRASLINLTGLAGSSNTTGDDQKKLDVIGNDIFVSAMRGSGK  64
              L  A+Q + K I+  IR+A L+NL GLAG+ N  GD QKKLDV+ +++  +A++ SG 
Sbjct  22   TTLLSAIQLAAKFISRDIRKAGLVNLLGLAGAENVQGDQQKKLDVLADELLKNALKASGI  81

Query  65   CRILVSEEEEQAIVFDEHPNARYAVVCDPIDGSSNLDAGVSVGTIFGIFKLPDELVGPNK  124
             ++LVSEEEE+ IVF+     +Y V  DP+DGSSN+D  VSVGTIF I++        + 
Sbjct  82   VKVLVSEEEEELIVFEPPKRGKYVVCFDPLDGSSNIDVNVSVGTIFSIYRRVSP---TDS  138

Query  125  KVTANDILRAGTEMVAAGFTMYGASAQLVITMRNGGVNGFTLENSLGEFILTHP  178
              T  D+L+ G E VAAG+ MYG+S  LV+T    GV+GFTL+ SLGEFILTH 
Sbjct  139  PTTIEDVLQPGNEQVAAGYAMYGSSTMLVLTT-GCGVHGFTLDPSLGEFILTHE  191


>CDD:436826 pfam18913, FBPase_C, Fructose-1-6-bisphosphatase, C-terminal 
domain.  This entry represents the C-terminal domain of Fructose-1-6-bisphosphatase 
enzymes. According to ECOD this domain 
has a Rossmann-like fold.
Length=125

 Score = 171 bits (436),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 61/126 (48%), Positives = 85/126 (67%), Gaps = 5/126 (4%)

Query  188  IYSVNEGNSMYWDDWVNEYFHSLKYPGEGQKPYSARYIGSMVADAYRTLLYGGVFAYPAD  247
            IY++NEGN+ +W+     Y   L       K Y+ RYIGSMVAD +R LL GG+F YPAD
Sbjct  5    IYAINEGNARFWNAPYRAYIDDLVSG----KGYTLRYIGSMVADVHRILLKGGIFLYPAD  60

Query  248  KKSTKGKLRILYECAPMAMLFENAGGLAINSRAERLLEVVPEHIHDRSGVFLGSKDEVQK  307
            ++S  GKLR+LYECAP+A L E AGG A +   +R+L++VP+ +H R+ +FLGS+DEV +
Sbjct  61   RRSPYGKLRLLYECAPLAFLIEQAGGKASDGT-QRILDIVPDSLHQRTPIFLGSRDEVAR  119

Query  308  IIDTYN  313
            +     
Sbjct  120  VEAYLK  125



Lambda      K        H        a         alpha
   0.318    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00035353

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425601 pfam00316, FBPase, Fructose-1-6-bisphosphatase, N-term...  230     2e-76
CDD:436826 pfam18913, FBPase_C, Fructose-1-6-bisphosphatase, C-te...  171     2e-54


>CDD:425601 pfam00316, FBPase, Fructose-1-6-bisphosphatase, N-terminal domain. 
 This family represents the N-terminus of this protein 
family.
Length=191

 Score = 230 bits (588),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 86/174 (49%), Positives = 116/174 (67%), Gaps = 4/174 (2%)

Query  5    RLLCHALQFSFKSIAYYIRRASLINLTGLAGSSNTTGDDQKKLDVIGNDIFVSAMRGSGK  64
              L  A+Q + K I+  IR+A L+NL GLAG+ N  GD QKKLDV+ +++  +A++ SG 
Sbjct  22   TTLLSAIQLAAKFISRDIRKAGLVNLLGLAGAENVQGDQQKKLDVLADELLKNALKASGI  81

Query  65   CRILVSEEEEQAIVFDEHPNARYAVVCDPIDGSSNLDAGVSVGTIFGIFKLPDELVGPNK  124
             ++LVSEEEE+ IVF+     +Y V  DP+DGSSN+D  VSVGTIF I++        + 
Sbjct  82   VKVLVSEEEEELIVFEPPKRGKYVVCFDPLDGSSNIDVNVSVGTIFSIYRRVSP---TDS  138

Query  125  KVTANDILRAGTEMVAAGFTMYGASAQLVITMRNGGVNGFTLENSLGEFILTHP  178
              T  D+L+ G E VAAG+ MYG+S  LV+T    GV+GFTL+ SLGEFILTH 
Sbjct  139  PTTIEDVLQPGNEQVAAGYAMYGSSTMLVLTT-GCGVHGFTLDPSLGEFILTHE  191


>CDD:436826 pfam18913, FBPase_C, Fructose-1-6-bisphosphatase, C-terminal 
domain.  This entry represents the C-terminal domain of Fructose-1-6-bisphosphatase 
enzymes. According to ECOD this domain 
has a Rossmann-like fold.
Length=125

 Score = 171 bits (436),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 61/126 (48%), Positives = 85/126 (67%), Gaps = 5/126 (4%)

Query  188  IYSVNEGNSMYWDDWVNEYFHSLKYPGEGQKPYSARYIGSMVADAYRTLLYGGVFAYPAD  247
            IY++NEGN+ +W+     Y   L       K Y+ RYIGSMVAD +R LL GG+F YPAD
Sbjct  5    IYAINEGNARFWNAPYRAYIDDLVSG----KGYTLRYIGSMVADVHRILLKGGIFLYPAD  60

Query  248  KKSTKGKLRILYECAPMAMLFENAGGLAINSRAERLLEVVPEHIHDRSGVFLGSKDEVQK  307
            ++S  GKLR+LYECAP+A L E AGG A +   +R+L++VP+ +H R+ +FLGS+DEV +
Sbjct  61   RRSPYGKLRLLYECAPLAFLIEQAGGKASDGT-QRILDIVPDSLHQRTPIFLGSRDEVAR  119

Query  308  IIDTYN  313
            +     
Sbjct  120  VEAYLK  125



Lambda      K        H        a         alpha
   0.318    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00031043

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425601 pfam00316, FBPase, Fructose-1-6-bisphosphatase, N-term...  230     2e-76
CDD:436826 pfam18913, FBPase_C, Fructose-1-6-bisphosphatase, C-te...  171     2e-54


>CDD:425601 pfam00316, FBPase, Fructose-1-6-bisphosphatase, N-terminal domain. 
 This family represents the N-terminus of this protein 
family.
Length=191

 Score = 230 bits (588),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 86/174 (49%), Positives = 116/174 (67%), Gaps = 4/174 (2%)

Query  5    RLLCHALQFSFKSIAYYIRRASLINLTGLAGSSNTTGDDQKKLDVIGNDIFVSAMRGSGK  64
              L  A+Q + K I+  IR+A L+NL GLAG+ N  GD QKKLDV+ +++  +A++ SG 
Sbjct  22   TTLLSAIQLAAKFISRDIRKAGLVNLLGLAGAENVQGDQQKKLDVLADELLKNALKASGI  81

Query  65   CRILVSEEEEQAIVFDEHPNARYAVVCDPIDGSSNLDAGVSVGTIFGIFKLPDELVGPNK  124
             ++LVSEEEE+ IVF+     +Y V  DP+DGSSN+D  VSVGTIF I++        + 
Sbjct  82   VKVLVSEEEEELIVFEPPKRGKYVVCFDPLDGSSNIDVNVSVGTIFSIYRRVSP---TDS  138

Query  125  KVTANDILRAGTEMVAAGFTMYGASAQLVITMRNGGVNGFTLENSLGEFILTHP  178
              T  D+L+ G E VAAG+ MYG+S  LV+T    GV+GFTL+ SLGEFILTH 
Sbjct  139  PTTIEDVLQPGNEQVAAGYAMYGSSTMLVLTT-GCGVHGFTLDPSLGEFILTHE  191


>CDD:436826 pfam18913, FBPase_C, Fructose-1-6-bisphosphatase, C-terminal 
domain.  This entry represents the C-terminal domain of Fructose-1-6-bisphosphatase 
enzymes. According to ECOD this domain 
has a Rossmann-like fold.
Length=125

 Score = 171 bits (436),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 61/126 (48%), Positives = 85/126 (67%), Gaps = 5/126 (4%)

Query  188  IYSVNEGNSMYWDDWVNEYFHSLKYPGEGQKPYSARYIGSMVADAYRTLLYGGVFAYPAD  247
            IY++NEGN+ +W+     Y   L       K Y+ RYIGSMVAD +R LL GG+F YPAD
Sbjct  5    IYAINEGNARFWNAPYRAYIDDLVSG----KGYTLRYIGSMVADVHRILLKGGIFLYPAD  60

Query  248  KKSTKGKLRILYECAPMAMLFENAGGLAINSRAERLLEVVPEHIHDRSGVFLGSKDEVQK  307
            ++S  GKLR+LYECAP+A L E AGG A +   +R+L++VP+ +H R+ +FLGS+DEV +
Sbjct  61   RRSPYGKLRLLYECAPLAFLIEQAGGKASDGT-QRILDIVPDSLHQRTPIFLGSRDEVAR  119

Query  308  IIDTYN  313
            +     
Sbjct  120  VEAYLK  125



Lambda      K        H        a         alpha
   0.318    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00031045

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425601 pfam00316, FBPase, Fructose-1-6-bisphosphatase, N-term...  230     2e-76
CDD:436826 pfam18913, FBPase_C, Fructose-1-6-bisphosphatase, C-te...  171     2e-54


>CDD:425601 pfam00316, FBPase, Fructose-1-6-bisphosphatase, N-terminal domain. 
 This family represents the N-terminus of this protein 
family.
Length=191

 Score = 230 bits (588),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 86/174 (49%), Positives = 116/174 (67%), Gaps = 4/174 (2%)

Query  5    RLLCHALQFSFKSIAYYIRRASLINLTGLAGSSNTTGDDQKKLDVIGNDIFVSAMRGSGK  64
              L  A+Q + K I+  IR+A L+NL GLAG+ N  GD QKKLDV+ +++  +A++ SG 
Sbjct  22   TTLLSAIQLAAKFISRDIRKAGLVNLLGLAGAENVQGDQQKKLDVLADELLKNALKASGI  81

Query  65   CRILVSEEEEQAIVFDEHPNARYAVVCDPIDGSSNLDAGVSVGTIFGIFKLPDELVGPNK  124
             ++LVSEEEE+ IVF+     +Y V  DP+DGSSN+D  VSVGTIF I++        + 
Sbjct  82   VKVLVSEEEEELIVFEPPKRGKYVVCFDPLDGSSNIDVNVSVGTIFSIYRRVSP---TDS  138

Query  125  KVTANDILRAGTEMVAAGFTMYGASAQLVITMRNGGVNGFTLENSLGEFILTHP  178
              T  D+L+ G E VAAG+ MYG+S  LV+T    GV+GFTL+ SLGEFILTH 
Sbjct  139  PTTIEDVLQPGNEQVAAGYAMYGSSTMLVLTT-GCGVHGFTLDPSLGEFILTHE  191


>CDD:436826 pfam18913, FBPase_C, Fructose-1-6-bisphosphatase, C-terminal 
domain.  This entry represents the C-terminal domain of Fructose-1-6-bisphosphatase 
enzymes. According to ECOD this domain 
has a Rossmann-like fold.
Length=125

 Score = 171 bits (436),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 61/126 (48%), Positives = 85/126 (67%), Gaps = 5/126 (4%)

Query  188  IYSVNEGNSMYWDDWVNEYFHSLKYPGEGQKPYSARYIGSMVADAYRTLLYGGVFAYPAD  247
            IY++NEGN+ +W+     Y   L       K Y+ RYIGSMVAD +R LL GG+F YPAD
Sbjct  5    IYAINEGNARFWNAPYRAYIDDLVSG----KGYTLRYIGSMVADVHRILLKGGIFLYPAD  60

Query  248  KKSTKGKLRILYECAPMAMLFENAGGLAINSRAERLLEVVPEHIHDRSGVFLGSKDEVQK  307
            ++S  GKLR+LYECAP+A L E AGG A +   +R+L++VP+ +H R+ +FLGS+DEV +
Sbjct  61   RRSPYGKLRLLYECAPLAFLIEQAGGKASDGT-QRILDIVPDSLHQRTPIFLGSRDEVAR  119

Query  308  IIDTYN  313
            +     
Sbjct  120  VEAYLK  125



Lambda      K        H        a         alpha
   0.318    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00031044

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00031046

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00035354

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.133    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00031047

Length=1335


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1702854200


Query= TCONS_00031049

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465219 pfam16653, Sacchrp_dh_C, Saccharopine dehydrogenase C-...  192     7e-62


>CDD:465219 pfam16653, Sacchrp_dh_C, Saccharopine dehydrogenase C-terminal 
domain.  This family comprises the C-terminal domain of saccharopine 
dehydrogenase. In some organisms this enzyme is found 
as a bifunctional polypeptide with lysine ketoglutarate 
reductase. The saccharopine dehydrogenase can also function 
as a saccharopine reductase.
Length=255

 Score = 192 bits (489),  Expect = 7e-62, Method: Composition-based stats.
 Identities = 90/211 (43%), Positives = 108/211 (51%), Gaps = 64/211 (30%)

Query  5    KPYYIYPGYAFVAYPNRDSCPYRERYQIPEAQTVIRGTLRYQGFPEMIKVLVDIGFLSDE  64
            +P YI PG+AF  YPNRDS P+ E Y +PEA+T+ RGTLRY GF E IK LV++G LS+E
Sbjct  82   EPIYIRPGFAFEGYPNRDSLPHEELYSLPEAKTLYRGTLRYPGFDEAIKSLVELGLLSEE  141

Query  65   AKDFLNSPIPWKEATQKILGATSSDEKDLEWAIASKTTFTDNDSRNRLISGLRWIGLFSD  124
                                     +  LEW + S                         
Sbjct  142  ------------------------PKVSLEWLLFS-------------------------  152

Query  125  EQITPRGNPLDTLCATLERKMQYGPGERDMVMLQHKFGIEHKDGSK-ETRTSTLVEYGDP  183
                    PLD L A LE K+  GPGERDMV+LQH+F     DG K E RT TLV+YGD 
Sbjct  153  -------GPLDVLAALLEDKLSLGPGERDMVVLQHEF-----DGKKGERRTYTLVDYGDH  200

Query  184  --NGYSAMAKTVGVPCGVAVKLVLDGTISQK  212
               G SAMA+TVGVP  +A  L+LDG I  K
Sbjct  201  EEVGPSAMARTVGVPAAIAALLILDGKIKNK  231



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00035355

Length=1236


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1590315082


Query= TCONS_00031048

Length=1116


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1422766522


Query= TCONS_00035356

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465219 pfam16653, Sacchrp_dh_C, Saccharopine dehydrogenase C-...  192     7e-62


>CDD:465219 pfam16653, Sacchrp_dh_C, Saccharopine dehydrogenase C-terminal 
domain.  This family comprises the C-terminal domain of saccharopine 
dehydrogenase. In some organisms this enzyme is found 
as a bifunctional polypeptide with lysine ketoglutarate 
reductase. The saccharopine dehydrogenase can also function 
as a saccharopine reductase.
Length=255

 Score = 192 bits (489),  Expect = 7e-62, Method: Composition-based stats.
 Identities = 90/211 (43%), Positives = 108/211 (51%), Gaps = 64/211 (30%)

Query  5    KPYYIYPGYAFVAYPNRDSCPYRERYQIPEAQTVIRGTLRYQGFPEMIKVLVDIGFLSDE  64
            +P YI PG+AF  YPNRDS P+ E Y +PEA+T+ RGTLRY GF E IK LV++G LS+E
Sbjct  82   EPIYIRPGFAFEGYPNRDSLPHEELYSLPEAKTLYRGTLRYPGFDEAIKSLVELGLLSEE  141

Query  65   AKDFLNSPIPWKEATQKILGATSSDEKDLEWAIASKTTFTDNDSRNRLISGLRWIGLFSD  124
                                     +  LEW + S                         
Sbjct  142  ------------------------PKVSLEWLLFS-------------------------  152

Query  125  EQITPRGNPLDTLCATLERKMQYGPGERDMVMLQHKFGIEHKDGSK-ETRTSTLVEYGDP  183
                    PLD L A LE K+  GPGERDMV+LQH+F     DG K E RT TLV+YGD 
Sbjct  153  -------GPLDVLAALLEDKLSLGPGERDMVVLQHEF-----DGKKGERRTYTLVDYGDH  200

Query  184  --NGYSAMAKTVGVPCGVAVKLVLDGTISQK  212
               G SAMA+TVGVP  +A  L+LDG I  K
Sbjct  201  EEVGPSAMARTVGVPAAIAALLILDGKIKNK  231



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00031050

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465219 pfam16653, Sacchrp_dh_C, Saccharopine dehydrogenase C-...  192     7e-62


>CDD:465219 pfam16653, Sacchrp_dh_C, Saccharopine dehydrogenase C-terminal 
domain.  This family comprises the C-terminal domain of saccharopine 
dehydrogenase. In some organisms this enzyme is found 
as a bifunctional polypeptide with lysine ketoglutarate 
reductase. The saccharopine dehydrogenase can also function 
as a saccharopine reductase.
Length=255

 Score = 192 bits (489),  Expect = 7e-62, Method: Composition-based stats.
 Identities = 90/211 (43%), Positives = 108/211 (51%), Gaps = 64/211 (30%)

Query  5    KPYYIYPGYAFVAYPNRDSCPYRERYQIPEAQTVIRGTLRYQGFPEMIKVLVDIGFLSDE  64
            +P YI PG+AF  YPNRDS P+ E Y +PEA+T+ RGTLRY GF E IK LV++G LS+E
Sbjct  82   EPIYIRPGFAFEGYPNRDSLPHEELYSLPEAKTLYRGTLRYPGFDEAIKSLVELGLLSEE  141

Query  65   AKDFLNSPIPWKEATQKILGATSSDEKDLEWAIASKTTFTDNDSRNRLISGLRWIGLFSD  124
                                     +  LEW + S                         
Sbjct  142  ------------------------PKVSLEWLLFS-------------------------  152

Query  125  EQITPRGNPLDTLCATLERKMQYGPGERDMVMLQHKFGIEHKDGSK-ETRTSTLVEYGDP  183
                    PLD L A LE K+  GPGERDMV+LQH+F     DG K E RT TLV+YGD 
Sbjct  153  -------GPLDVLAALLEDKLSLGPGERDMVVLQHEF-----DGKKGERRTYTLVDYGDH  200

Query  184  --NGYSAMAKTVGVPCGVAVKLVLDGTISQK  212
               G SAMA+TVGVP  +A  L+LDG I  K
Sbjct  201  EEVGPSAMARTVGVPAAIAALLILDGKIKNK  231



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00031051

Length=1335


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1702854200


Query= TCONS_00031052

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465219 pfam16653, Sacchrp_dh_C, Saccharopine dehydrogenase C-...  192     7e-62


>CDD:465219 pfam16653, Sacchrp_dh_C, Saccharopine dehydrogenase C-terminal 
domain.  This family comprises the C-terminal domain of saccharopine 
dehydrogenase. In some organisms this enzyme is found 
as a bifunctional polypeptide with lysine ketoglutarate 
reductase. The saccharopine dehydrogenase can also function 
as a saccharopine reductase.
Length=255

 Score = 192 bits (489),  Expect = 7e-62, Method: Composition-based stats.
 Identities = 90/211 (43%), Positives = 108/211 (51%), Gaps = 64/211 (30%)

Query  5    KPYYIYPGYAFVAYPNRDSCPYRERYQIPEAQTVIRGTLRYQGFPEMIKVLVDIGFLSDE  64
            +P YI PG+AF  YPNRDS P+ E Y +PEA+T+ RGTLRY GF E IK LV++G LS+E
Sbjct  82   EPIYIRPGFAFEGYPNRDSLPHEELYSLPEAKTLYRGTLRYPGFDEAIKSLVELGLLSEE  141

Query  65   AKDFLNSPIPWKEATQKILGATSSDEKDLEWAIASKTTFTDNDSRNRLISGLRWIGLFSD  124
                                     +  LEW + S                         
Sbjct  142  ------------------------PKVSLEWLLFS-------------------------  152

Query  125  EQITPRGNPLDTLCATLERKMQYGPGERDMVMLQHKFGIEHKDGSK-ETRTSTLVEYGDP  183
                    PLD L A LE K+  GPGERDMV+LQH+F     DG K E RT TLV+YGD 
Sbjct  153  -------GPLDVLAALLEDKLSLGPGERDMVVLQHEF-----DGKKGERRTYTLVDYGDH  200

Query  184  --NGYSAMAKTVGVPCGVAVKLVLDGTISQK  212
               G SAMA+TVGVP  +A  L+LDG I  K
Sbjct  201  EEVGPSAMARTVGVPAAIAALLILDGKIKNK  231



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00035357

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465219 pfam16653, Sacchrp_dh_C, Saccharopine dehydrogenase C-...  192     7e-62


>CDD:465219 pfam16653, Sacchrp_dh_C, Saccharopine dehydrogenase C-terminal 
domain.  This family comprises the C-terminal domain of saccharopine 
dehydrogenase. In some organisms this enzyme is found 
as a bifunctional polypeptide with lysine ketoglutarate 
reductase. The saccharopine dehydrogenase can also function 
as a saccharopine reductase.
Length=255

 Score = 192 bits (489),  Expect = 7e-62, Method: Composition-based stats.
 Identities = 90/211 (43%), Positives = 108/211 (51%), Gaps = 64/211 (30%)

Query  5    KPYYIYPGYAFVAYPNRDSCPYRERYQIPEAQTVIRGTLRYQGFPEMIKVLVDIGFLSDE  64
            +P YI PG+AF  YPNRDS P+ E Y +PEA+T+ RGTLRY GF E IK LV++G LS+E
Sbjct  82   EPIYIRPGFAFEGYPNRDSLPHEELYSLPEAKTLYRGTLRYPGFDEAIKSLVELGLLSEE  141

Query  65   AKDFLNSPIPWKEATQKILGATSSDEKDLEWAIASKTTFTDNDSRNRLISGLRWIGLFSD  124
                                     +  LEW + S                         
Sbjct  142  ------------------------PKVSLEWLLFS-------------------------  152

Query  125  EQITPRGNPLDTLCATLERKMQYGPGERDMVMLQHKFGIEHKDGSK-ETRTSTLVEYGDP  183
                    PLD L A LE K+  GPGERDMV+LQH+F     DG K E RT TLV+YGD 
Sbjct  153  -------GPLDVLAALLEDKLSLGPGERDMVVLQHEF-----DGKKGERRTYTLVDYGDH  200

Query  184  --NGYSAMAKTVGVPCGVAVKLVLDGTISQK  212
               G SAMA+TVGVP  +A  L+LDG I  K
Sbjct  201  EEVGPSAMARTVGVPAAIAALLILDGKIKNK  231



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00031053

Length=378


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00035358

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465219 pfam16653, Sacchrp_dh_C, Saccharopine dehydrogenase C-...  192     7e-62


>CDD:465219 pfam16653, Sacchrp_dh_C, Saccharopine dehydrogenase C-terminal 
domain.  This family comprises the C-terminal domain of saccharopine 
dehydrogenase. In some organisms this enzyme is found 
as a bifunctional polypeptide with lysine ketoglutarate 
reductase. The saccharopine dehydrogenase can also function 
as a saccharopine reductase.
Length=255

 Score = 192 bits (489),  Expect = 7e-62, Method: Composition-based stats.
 Identities = 90/211 (43%), Positives = 108/211 (51%), Gaps = 64/211 (30%)

Query  5    KPYYIYPGYAFVAYPNRDSCPYRERYQIPEAQTVIRGTLRYQGFPEMIKVLVDIGFLSDE  64
            +P YI PG+AF  YPNRDS P+ E Y +PEA+T+ RGTLRY GF E IK LV++G LS+E
Sbjct  82   EPIYIRPGFAFEGYPNRDSLPHEELYSLPEAKTLYRGTLRYPGFDEAIKSLVELGLLSEE  141

Query  65   AKDFLNSPIPWKEATQKILGATSSDEKDLEWAIASKTTFTDNDSRNRLISGLRWIGLFSD  124
                                     +  LEW + S                         
Sbjct  142  ------------------------PKVSLEWLLFS-------------------------  152

Query  125  EQITPRGNPLDTLCATLERKMQYGPGERDMVMLQHKFGIEHKDGSK-ETRTSTLVEYGDP  183
                    PLD L A LE K+  GPGERDMV+LQH+F     DG K E RT TLV+YGD 
Sbjct  153  -------GPLDVLAALLEDKLSLGPGERDMVVLQHEF-----DGKKGERRTYTLVDYGDH  200

Query  184  --NGYSAMAKTVGVPCGVAVKLVLDGTISQK  212
               G SAMA+TVGVP  +A  L+LDG I  K
Sbjct  201  EEVGPSAMARTVGVPAAIAALLILDGKIKNK  231



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00031054

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465219 pfam16653, Sacchrp_dh_C, Saccharopine dehydrogenase C-...  192     7e-62


>CDD:465219 pfam16653, Sacchrp_dh_C, Saccharopine dehydrogenase C-terminal 
domain.  This family comprises the C-terminal domain of saccharopine 
dehydrogenase. In some organisms this enzyme is found 
as a bifunctional polypeptide with lysine ketoglutarate 
reductase. The saccharopine dehydrogenase can also function 
as a saccharopine reductase.
Length=255

 Score = 192 bits (489),  Expect = 7e-62, Method: Composition-based stats.
 Identities = 90/211 (43%), Positives = 108/211 (51%), Gaps = 64/211 (30%)

Query  5    KPYYIYPGYAFVAYPNRDSCPYRERYQIPEAQTVIRGTLRYQGFPEMIKVLVDIGFLSDE  64
            +P YI PG+AF  YPNRDS P+ E Y +PEA+T+ RGTLRY GF E IK LV++G LS+E
Sbjct  82   EPIYIRPGFAFEGYPNRDSLPHEELYSLPEAKTLYRGTLRYPGFDEAIKSLVELGLLSEE  141

Query  65   AKDFLNSPIPWKEATQKILGATSSDEKDLEWAIASKTTFTDNDSRNRLISGLRWIGLFSD  124
                                     +  LEW + S                         
Sbjct  142  ------------------------PKVSLEWLLFS-------------------------  152

Query  125  EQITPRGNPLDTLCATLERKMQYGPGERDMVMLQHKFGIEHKDGSK-ETRTSTLVEYGDP  183
                    PLD L A LE K+  GPGERDMV+LQH+F     DG K E RT TLV+YGD 
Sbjct  153  -------GPLDVLAALLEDKLSLGPGERDMVVLQHEF-----DGKKGERRTYTLVDYGDH  200

Query  184  --NGYSAMAKTVGVPCGVAVKLVLDGTISQK  212
               G SAMA+TVGVP  +A  L+LDG I  K
Sbjct  201  EEVGPSAMARTVGVPAAIAALLILDGKIKNK  231



Lambda      K        H        a         alpha
   0.318    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00031055

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462716 pfam09229, Aha1_N, Activator of Hsp90 ATPase, N-termin...  181     2e-57
CDD:429921 pfam08327, AHSA1, Activator of Hsp90 ATPase homolog 1-...  97.8    2e-25


>CDD:462716 pfam09229, Aha1_N, Activator of Hsp90 ATPase, N-terminal.  Members 
of this family, which are predominantly found in the protein 
'Activator of Hsp90 ATPase' adopt a secondary structure 
consisting of an N-terminal alpha-helix leading into a four-stranded 
meandering antiparallel beta-sheet, followed by 
a C-terminal alpha-helix. The two helices are packed together, 
with the beta-sheet curving around them. They bind to the 
molecular chaperone HSP82 and stimulate its ATPase activity.
Length=134

 Score = 181 bits (463),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 71/134 (53%), Positives = 95/134 (71%), Gaps = 2/134 (1%)

Query  13   NKDASAWAKTYLKEKLRTLSAEEDGV-SVKISDLLTMDGDVDVSQRKGKVITLFDVKLQL  71
             K+ + WAK YLKE L  L  E D   SVKI+++ +++GD  V+QRKGKVIT++D+KL L
Sbjct  1    EKNCTPWAKEYLKELLLGLEIEGDEGKSVKITEVSSVEGDASVNQRKGKVITIYDLKLTL  60

Query  72   EYEGKTKDQ-VSVSGTITIPEVAHDTEEDEYVFEIENYSDSASKQPVKDLVRSKLVPQIR  130
            E+EG TK+    V GTITIPE++HD E+DEY FE+  Y +S  K  +KDLVR KLVP++R
Sbjct  61   EWEGTTKEDGEEVKGTITIPELSHDNEDDEYEFEVSVYDESKEKDKLKDLVRKKLVPKLR  120

Query  131  QELGKLAPALIAEH  144
            ++L K    LI EH
Sbjct  121  EKLAKFVKELIEEH  134


>CDD:429921 pfam08327, AHSA1, Activator of Hsp90 ATPase homolog 1-like protein. 
 This family includes eukaryotic, prokaryotic and archaeal 
proteins that bear similarity to a C-terminal region of 
human activator of 90 kDa heat shock protein ATPase homolog 
1 (AHSA1/p38). This protein is known to interact with the 
middle domain of Hsp90, and stimulate its ATPase activity. It 
is probably a general upregulator of Hsp90 function, particularly 
contributing to its efficiency in conditions of increased 
stress. p38 is also known to interact with the cytoplasmic 
domain of the VSV G protein, and may thus be involved in 
protein transport. It has also been reported as being underexpressed 
in Down's syndrome. This region is found repeated 
in two members of this family.
Length=125

 Score = 97.8 bits (244),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 36/129 (28%), Positives = 62/129 (48%), Gaps = 12/129 (9%)

Query  203  RTTAEEMYTTFTDPQRIAAFTRGAPRQFDGAQVGGKFSIFDGNV------NGEFVKLDKP  256
                E ++   TDP+ +A +      + D  + GGKF    G        NG +++L  P
Sbjct  1    DAPPERVFRALTDPELLARWFTRTVAEMD-LRPGGKFRFMRGPDGEEFGGNGTYLELVPP  59

Query  257  KQIVQKWRLAQWPEGHFSTLEINFDQNDVDAVTQMRVTWTGVPVGQED--VTKQNWDVYY  314
            K+IV  WRL  WPEG +ST+ +  +  +V   T++ +T TG P G+++    ++ W+   
Sbjct  60   KRIVYTWRLDDWPEGGYSTVTVELE--EVGGGTRLTLTHTGEPAGEKEEMGMEEGWEQSL  117

Query  315  VRSIKQTFG  323
               +K    
Sbjct  118  -DQLKALLE  125



Lambda      K        H        a         alpha
   0.316    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0732    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00035359

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00035360

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00035361

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00031056

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00035362

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00031057

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00031059

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00031058

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00031060

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.129    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00031062

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460531 pfam02320, UCR_hinge, Ubiquinol-cytochrome C reductase...  97.6    9e-29


>CDD:460531 pfam02320, UCR_hinge, Ubiquinol-cytochrome C reductase hinge 
protein.  The ubiquinol-cytochrome C reductase complex (cytochrome 
bc1 complex) is a respiratory multienzyme complex. This 
Pfam family represents the 'hinge' protein of the complex 
which is thought to mediate formation of the cytochrome c1 
and cytochrome c complex.
Length=65

 Score = 97.6 bits (244),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 40/70 (57%), Positives = 46/70 (66%), Gaps = 5/70 (7%)

Query  56   DIKPKLEEECANGPQCAPYKHHYDECVERVTRQEEDPDHKGPKEDCVEEFFHLAHCATNC  115
            D K  L EEC   P+CA  KHHY+ECVERVT + ED      +EDCVEEFF L HC  +C
Sbjct  1    DPKDALREECKEKPKCAKLKHHYEECVERVTSRSED-----TEEDCVEEFFDLVHCVDHC  55

Query  116  AAPKLWKALK  125
             APKL+  LK
Sbjct  56   VAPKLFSKLK  65



Lambda      K        H        a         alpha
   0.308    0.127    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00031061

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.295    0.116    0.303    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00035364

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460531 pfam02320, UCR_hinge, Ubiquinol-cytochrome C reductase...  63.3    4e-15


>CDD:460531 pfam02320, UCR_hinge, Ubiquinol-cytochrome C reductase hinge 
protein.  The ubiquinol-cytochrome C reductase complex (cytochrome 
bc1 complex) is a respiratory multienzyme complex. This 
Pfam family represents the 'hinge' protein of the complex 
which is thought to mediate formation of the cytochrome c1 
and cytochrome c complex.
Length=65

 Score = 63.3 bits (155),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 32/49 (65%), Gaps = 5/49 (10%)

Query  89   DIKPKLEEECANGPQCAPYKHHYDECVERVTRQEEDPDHKGPKEDCVEE  137
            D K  L EEC   P+CA  KHHY+ECVERVT + ED      +EDCVEE
Sbjct  1    DPKDALREECKEKPKCAKLKHHYEECVERVTSRSED-----TEEDCVEE  44



Lambda      K        H        a         alpha
   0.295    0.119    0.320    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00031063

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00031064

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00035365

Length=127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460531 pfam02320, UCR_hinge, Ubiquinol-cytochrome C reductase...  97.6    9e-29


>CDD:460531 pfam02320, UCR_hinge, Ubiquinol-cytochrome C reductase hinge 
protein.  The ubiquinol-cytochrome C reductase complex (cytochrome 
bc1 complex) is a respiratory multienzyme complex. This 
Pfam family represents the 'hinge' protein of the complex 
which is thought to mediate formation of the cytochrome c1 
and cytochrome c complex.
Length=65

 Score = 97.6 bits (244),  Expect = 9e-29, Method: Composition-based stats.
 Identities = 40/70 (57%), Positives = 46/70 (66%), Gaps = 5/70 (7%)

Query  58   DIKPKLEEECANGPQCAPYKHHYDECVERVTRQEEDPDHKGPKEDCVEEFFHLAHCATNC  117
            D K  L EEC   P+CA  KHHY+ECVERVT + ED      +EDCVEEFF L HC  +C
Sbjct  1    DPKDALREECKEKPKCAKLKHHYEECVERVTSRSED-----TEEDCVEEFFDLVHCVDHC  55

Query  118  AAPKLWKALK  127
             APKL+  LK
Sbjct  56   VAPKLFSKLK  65



Lambda      K        H        a         alpha
   0.307    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00031065

Length=808
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463757 pfam12937, F-box-like, F-box-like. This is an F-box-li...  63.7    1e-13


>CDD:463757 pfam12937, F-box-like, F-box-like.  This is an F-box-like family.
Length=45

 Score = 63.7 bits (156),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 22/45 (49%), Positives = 26/45 (58%), Gaps = 0/45 (0%)

Query  39  VLKLPPEITAEIFSYLDPRTLLTASLASRAWRSRILDTRLWRDLY  83
           +  LP EI  +IFSYLDP+ LL  +L  R WR    D  LWR L 
Sbjct  1   LSSLPDEILLQIFSYLDPKDLLRLALVCRRWRELASDDSLWRRLC  45



Lambda      K        H        a         alpha
   0.318    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1038978528


Query= TCONS_00031066

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00031067

Length=887
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:434730 pfam15456, Uds1, Up-regulated During Septation. Uds1 i...  146     1e-41


>CDD:434730 pfam15456, Uds1, Up-regulated During Septation.  Uds1 is a domain 
family is found mostly in fungi, and is typically between 
120 and 138 amino acids in length. The GO annotation for 
the S.pombe protein describes the protein as barrier septum 
assembly involved in cell cycle cytokinesis, GO:0071937. Many 
of the uncharacterized members are listed as being involucrin 
repeat proteins, but this can not be substantiated.
Length=119

 Score = 146 bits (371),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 65/136 (48%), Positives = 80/136 (59%), Gaps = 17/136 (13%)

Query  73   LLTETAMGDSMNYEIMSLEEVEALKKDYSFLSNRLNAAKRKLALEMKLRDAALSLSKLNN  132
            LL ETA+ DS  +EI+S EEVE LKK+   L +RL   +RKLALE KLRDAA SL +L +
Sbjct  1    LLVETALLDSQEFEILSFEEVEELKKELRALDSRLEYLRRKLALETKLRDAARSLHRLYS  60

Query  133  STNRRASEEYDAGDLPKSRPSHRNGFGATDSVDKTVEELAESTRKCEELANEIWNLERKA  192
            S  R                        ++S+ K  EELAES RK +ELA E+  LE + 
Sbjct  61   SYLRSPR-----------------NSKFSESLLKAEEELAESDRKIDELAQELEKLENRR  103

Query  193  QHVRQRLLEHTAGVLQ  208
              VR+RLLEHTA VLQ
Sbjct  104  AEVRRRLLEHTAAVLQ  119



Lambda      K        H        a         alpha
   0.310    0.125    0.328    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1136927088


Query= TCONS_00031068

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00031069

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399412 pfam06395, CDC24, CDC24 Calponin. Is a calponin homolo...  144     5e-44
CDD:459876 pfam00621, RhoGEF, RhoGEF domain. Guanine nucleotide e...  87.7    2e-21


>CDD:399412 pfam06395, CDC24, CDC24 Calponin.  Is a calponin homology domain.
Length=89

 Score = 144 bits (365),  Expect = 5e-44, Method: Composition-based stats.
 Identities = 45/89 (51%), Positives = 57/89 (64%), Gaps = 0/89 (0%)

Query  61   DPVASLWNCLRNGYPLLTIYNASDPPELLEIDPSKVPEAKRPKAATFKFLQASLQELAFP  120
            DPV  LW   R GYPL  ++NA  P   L +DP    +AK  K + + FL A   EL FP
Sbjct  1    DPVTQLWKLFRQGYPLCALFNALQPETPLPVDPVSSDDAKICKKSVYDFLLACKSELGFP  60

Query  121  QQDCFLITDLYGDSTTGFIKVIKMVNRVL  149
              + F I+DL+GDSTTGF+KV+K+VNRVL
Sbjct  61   DDELFTISDLFGDSTTGFVKVLKVVNRVL  89


>CDD:459876 pfam00621, RhoGEF, RhoGEF domain.  Guanine nucleotide exchange 
factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous 
(DH) domain. It appears that pfam00169 domains invariably 
occur C-terminal to RhoGEF/DH domains.
Length=176

 Score = 87.7 bits (218),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 45/156 (29%), Positives = 75/156 (48%), Gaps = 25/156 (16%)

Query  182  ILKELLETERDYVHHLQNL---------QALKKELEETGALTGDASHQIFLNLNNLLDFA  232
            ++KELL+TER YV  L+ L         + L +  EE           IF N+  + +  
Sbjct  1    VIKELLQTERSYVRDLEILVEVFLPPNSKPLSESEEE--------IKTIFSNIEEIYELH  52

Query  233  QRFLIRMEQHYALPEDKQNWGELFIQHEEAFRQYEPFISNQMRCDEVCLKEWDKIRSAPR  292
            ++ L  +E+        Q  G++F++    F+ Y  + SN  +  ++ LK+  K     R
Sbjct  53   RQLL--LEELLKEWISIQRIGDIFLKFAPGFKVYSTYCSNYPKALKL-LKKLLKKNPKFR  109

Query  293  PLDLQQMVAQPA----TLNSFFVKPFQRMTKYPLML  324
               L+++ A P      LNSF +KP QR+ +YPL+L
Sbjct  110  AF-LEELEANPECRGLDLNSFLIKPVQRIPRYPLLL  144



Lambda      K        H        a         alpha
   0.320    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00031070

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399412 pfam06395, CDC24, CDC24 Calponin. Is a calponin homolo...  143     4e-42
CDD:464707 pfam15411, PH_10, Pleckstrin homology domain. This Ple...  125     5e-35
CDD:459876 pfam00621, RhoGEF, RhoGEF domain. Guanine nucleotide e...  108     3e-28


>CDD:399412 pfam06395, CDC24, CDC24 Calponin.  Is a calponin homology domain.
Length=89

 Score = 143 bits (363),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 45/89 (51%), Positives = 57/89 (64%), Gaps = 0/89 (0%)

Query  61   DPVASLWNCLRNGYPLLTIYNASDPPELLEIDPSKVPEAKRPKAATFKFLQASLQELAFP  120
            DPV  LW   R GYPL  ++NA  P   L +DP    +AK  K + + FL A   EL FP
Sbjct  1    DPVTQLWKLFRQGYPLCALFNALQPETPLPVDPVSSDDAKICKKSVYDFLLACKSELGFP  60

Query  121  QQDCFLITDLYGDSTTGFIKVIKMVNRVL  149
              + F I+DL+GDSTTGF+KV+K+VNRVL
Sbjct  61   DDELFTISDLFGDSTTGFVKVLKVVNRVL  89


>CDD:464707 pfam15411, PH_10, Pleckstrin homology domain.  This Pleckstrin 
homology domain is found in some fungal species.
Length=120

 Score = 125 bits (316),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 45/92 (49%), Positives = 59/92 (64%), Gaps = 3/92 (3%)

Query  384  SFGELLRFGTFTVLKGDTGKDSEREYHIYLFQRILLCCKDINPNKQKTKLMVSKDKPATT  443
             FGELL     TV K     DSEREYH+YLF++ILLCCK+I+P K+     + K   +++
Sbjct  1    RFGELLLHDKLTVGKDS---DSEREYHVYLFEKILLCCKEISPKKKSKSNSLLKKSSSSS  57

Query  444  IKGKPRLQLKGRIYMANVTDIVCLQKPGMSVL  475
             K K RLQLKGRIY++N+T +    KPG   L
Sbjct  58   SKKKTRLQLKGRIYISNITSVTSSSKPGSYTL  89


>CDD:459876 pfam00621, RhoGEF, RhoGEF domain.  Guanine nucleotide exchange 
factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous 
(DH) domain. It appears that pfam00169 domains invariably 
occur C-terminal to RhoGEF/DH domains.
Length=176

 Score = 108 bits (273),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 92/189 (49%), Gaps = 28/189 (15%)

Query  182  ILKELLETERDYVHHLQNL---------QALKKELEETGALTGDASHQIFLNLNNLLDFA  232
            ++KELL+TER YV  L+ L         + L +  EE           IF N+  + +  
Sbjct  1    VIKELLQTERSYVRDLEILVEVFLPPNSKPLSESEEE--------IKTIFSNIEEIYELH  52

Query  233  QRFLIRMEQHYALPEDKQNWGELFIQHEEAFRQYEPFISNQMRCDEVCLKEWDKIRSAPR  292
            ++ L  +E+        Q  G++F++    F+ Y  + SN  +  ++ LK+  K     R
Sbjct  53   RQLL--LEELLKEWISIQRIGDIFLKFAPGFKVYSTYCSNYPKALKL-LKKLLKKNPKFR  109

Query  293  PLDLQQMVAQPA----TLNSFFVKPFQRMTKYPLMLMELRKQTED--PDLQADITKAIDT  346
               L+++ A P      LNSF +KP QR+ +YPL+L EL K T    PD + D+ KA++ 
Sbjct  110  AF-LEELEANPECRGLDLNSFLIKPVQRIPRYPLLLKELLKHTPPDHPDYE-DLKKALEA  167

Query  347  IQSVLDSAN  355
            I+ V    N
Sbjct  168  IKEVAKQIN  176



Lambda      K        H        a         alpha
   0.319    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 649534314


Query= TCONS_00031073

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:399412 pfam06395, CDC24, CDC24 Calponin. Is a calponin homolo...  143     4e-42
CDD:464707 pfam15411, PH_10, Pleckstrin homology domain. This Ple...  125     5e-35
CDD:459876 pfam00621, RhoGEF, RhoGEF domain. Guanine nucleotide e...  108     3e-28


>CDD:399412 pfam06395, CDC24, CDC24 Calponin.  Is a calponin homology domain.
Length=89

 Score = 143 bits (363),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 45/89 (51%), Positives = 57/89 (64%), Gaps = 0/89 (0%)

Query  61   DPVASLWNCLRNGYPLLTIYNASDPPELLEIDPSKVPEAKRPKAATFKFLQASLQELAFP  120
            DPV  LW   R GYPL  ++NA  P   L +DP    +AK  K + + FL A   EL FP
Sbjct  1    DPVTQLWKLFRQGYPLCALFNALQPETPLPVDPVSSDDAKICKKSVYDFLLACKSELGFP  60

Query  121  QQDCFLITDLYGDSTTGFIKVIKMVNRVL  149
              + F I+DL+GDSTTGF+KV+K+VNRVL
Sbjct  61   DDELFTISDLFGDSTTGFVKVLKVVNRVL  89


>CDD:464707 pfam15411, PH_10, Pleckstrin homology domain.  This Pleckstrin 
homology domain is found in some fungal species.
Length=120

 Score = 125 bits (316),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 45/92 (49%), Positives = 59/92 (64%), Gaps = 3/92 (3%)

Query  384  SFGELLRFGTFTVLKGDTGKDSEREYHIYLFQRILLCCKDINPNKQKTKLMVSKDKPATT  443
             FGELL     TV K     DSEREYH+YLF++ILLCCK+I+P K+     + K   +++
Sbjct  1    RFGELLLHDKLTVGKDS---DSEREYHVYLFEKILLCCKEISPKKKSKSNSLLKKSSSSS  57

Query  444  IKGKPRLQLKGRIYMANVTDIVCLQKPGMSVL  475
             K K RLQLKGRIY++N+T +    KPG   L
Sbjct  58   SKKKTRLQLKGRIYISNITSVTSSSKPGSYTL  89


>CDD:459876 pfam00621, RhoGEF, RhoGEF domain.  Guanine nucleotide exchange 
factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous 
(DH) domain. It appears that pfam00169 domains invariably 
occur C-terminal to RhoGEF/DH domains.
Length=176

 Score = 108 bits (273),  Expect = 3e-28, Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 92/189 (49%), Gaps = 28/189 (15%)

Query  182  ILKELLETERDYVHHLQNL---------QALKKELEETGALTGDASHQIFLNLNNLLDFA  232
            ++KELL+TER YV  L+ L         + L +  EE           IF N+  + +  
Sbjct  1    VIKELLQTERSYVRDLEILVEVFLPPNSKPLSESEEE--------IKTIFSNIEEIYELH  52

Query  233  QRFLIRMEQHYALPEDKQNWGELFIQHEEAFRQYEPFISNQMRCDEVCLKEWDKIRSAPR  292
            ++ L  +E+        Q  G++F++    F+ Y  + SN  +  ++ LK+  K     R
Sbjct  53   RQLL--LEELLKEWISIQRIGDIFLKFAPGFKVYSTYCSNYPKALKL-LKKLLKKNPKFR  109

Query  293  PLDLQQMVAQPA----TLNSFFVKPFQRMTKYPLMLMELRKQTED--PDLQADITKAIDT  346
               L+++ A P      LNSF +KP QR+ +YPL+L EL K T    PD + D+ KA++ 
Sbjct  110  AF-LEELEANPECRGLDLNSFLIKPVQRIPRYPLLLKELLKHTPPDHPDYE-DLKKALEA  167

Query  347  IQSVLDSAN  355
            I+ V    N
Sbjct  168  IKEVAKQIN  176



Lambda      K        H        a         alpha
   0.319    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 649534314


Query= TCONS_00031071

Length=914
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464707 pfam15411, PH_10, Pleckstrin homology domain. This Ple...  185     1e-55
CDD:399412 pfam06395, CDC24, CDC24 Calponin. Is a calponin homolo...  148     1e-42
CDD:459876 pfam00621, RhoGEF, RhoGEF domain. Guanine nucleotide e...  114     7e-30


>CDD:464707 pfam15411, PH_10, Pleckstrin homology domain.  This Pleckstrin 
homology domain is found in some fungal species.
Length=120

 Score = 185 bits (473),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 57/123 (46%), Positives = 81/123 (66%), Gaps = 3/123 (2%)

Query  384  SFGELLRFGTFTVLKGDTGKDSEREYHIYLFQRILLCCKDINPNKQKTKLMVSKDKPATT  443
             FGELL     TV K     DSEREYH+YLF++ILLCCK+I+P K+     + K   +++
Sbjct  1    RFGELLLHDKLTVGKDS---DSEREYHVYLFEKILLCCKEISPKKKSKSNSLLKKSSSSS  57

Query  444  IKGKPRLQLKGRIYMANVTDIVCLQKPGSYRIQIFWKGDPGVVDNFIIRFQNEDVMRKWY  503
             K K RLQLKGRIY++N+T +    KPGSY + I W GD G +++F +RF+NE+ ++ W 
Sbjct  58   SKKKTRLQLKGRIYISNITSVTSSSKPGSYTLTISWSGDDGELESFTLRFRNEEQLKLWE  117

Query  504  KEI  506
              +
Sbjct  118  SAL  120


>CDD:399412 pfam06395, CDC24, CDC24 Calponin.  Is a calponin homology domain.
Length=89

 Score = 148 bits (375),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 45/89 (51%), Positives = 57/89 (64%), Gaps = 0/89 (0%)

Query  61   DPVASLWNCLRNGYPLLTIYNASDPPELLEIDPSKVPEAKRPKAATFKFLQASLQELAFP  120
            DPV  LW   R GYPL  ++NA  P   L +DP    +AK  K + + FL A   EL FP
Sbjct  1    DPVTQLWKLFRQGYPLCALFNALQPETPLPVDPVSSDDAKICKKSVYDFLLACKSELGFP  60

Query  121  QQDCFLITDLYGDSTTGFIKVIKMVNRVL  149
              + F I+DL+GDSTTGF+KV+K+VNRVL
Sbjct  61   DDELFTISDLFGDSTTGFVKVLKVVNRVL  89


>CDD:459876 pfam00621, RhoGEF, RhoGEF domain.  Guanine nucleotide exchange 
factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous 
(DH) domain. It appears that pfam00169 domains invariably 
occur C-terminal to RhoGEF/DH domains.
Length=176

 Score = 114 bits (288),  Expect = 7e-30, Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 92/189 (49%), Gaps = 28/189 (15%)

Query  182  ILKELLETERDYVHHLQNL---------QALKKELEETGALTGDASHQIFLNLNNLLDFA  232
            ++KELL+TER YV  L+ L         + L +  EE           IF N+  + +  
Sbjct  1    VIKELLQTERSYVRDLEILVEVFLPPNSKPLSESEEE--------IKTIFSNIEEIYELH  52

Query  233  QRFLIRMEQHYALPEDKQNWGELFIQHEEAFRQYEPFISNQMRCDEVCLKEWDKIRSAPR  292
            ++ L  +E+        Q  G++F++    F+ Y  + SN  +  ++ LK+  K     R
Sbjct  53   RQLL--LEELLKEWISIQRIGDIFLKFAPGFKVYSTYCSNYPKALKL-LKKLLKKNPKFR  109

Query  293  PLDLQQMVAQPA----TLNSFFVKPFQRMTKYPLMLMELRKQTED--PDLQADITKAIDT  346
               L+++ A P      LNSF +KP QR+ +YPL+L EL K T    PD + D+ KA++ 
Sbjct  110  AF-LEELEANPECRGLDLNSFLIKPVQRIPRYPLLLKELLKHTPPDHPDYE-DLKKALEA  167

Query  347  IQSVLDSAN  355
            I+ V    N
Sbjct  168  IKEVAKQIN  176



Lambda      K        H        a         alpha
   0.316    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1175685966


Query= TCONS_00031072

Length=914
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464707 pfam15411, PH_10, Pleckstrin homology domain. This Ple...  185     1e-55
CDD:399412 pfam06395, CDC24, CDC24 Calponin. Is a calponin homolo...  148     1e-42
CDD:459876 pfam00621, RhoGEF, RhoGEF domain. Guanine nucleotide e...  114     7e-30


>CDD:464707 pfam15411, PH_10, Pleckstrin homology domain.  This Pleckstrin 
homology domain is found in some fungal species.
Length=120

 Score = 185 bits (473),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 57/123 (46%), Positives = 81/123 (66%), Gaps = 3/123 (2%)

Query  384  SFGELLRFGTFTVLKGDTGKDSEREYHIYLFQRILLCCKDINPNKQKTKLMVSKDKPATT  443
             FGELL     TV K     DSEREYH+YLF++ILLCCK+I+P K+     + K   +++
Sbjct  1    RFGELLLHDKLTVGKDS---DSEREYHVYLFEKILLCCKEISPKKKSKSNSLLKKSSSSS  57

Query  444  IKGKPRLQLKGRIYMANVTDIVCLQKPGSYRIQIFWKGDPGVVDNFIIRFQNEDVMRKWY  503
             K K RLQLKGRIY++N+T +    KPGSY + I W GD G +++F +RF+NE+ ++ W 
Sbjct  58   SKKKTRLQLKGRIYISNITSVTSSSKPGSYTLTISWSGDDGELESFTLRFRNEEQLKLWE  117

Query  504  KEI  506
              +
Sbjct  118  SAL  120


>CDD:399412 pfam06395, CDC24, CDC24 Calponin.  Is a calponin homology domain.
Length=89

 Score = 148 bits (375),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 45/89 (51%), Positives = 57/89 (64%), Gaps = 0/89 (0%)

Query  61   DPVASLWNCLRNGYPLLTIYNASDPPELLEIDPSKVPEAKRPKAATFKFLQASLQELAFP  120
            DPV  LW   R GYPL  ++NA  P   L +DP    +AK  K + + FL A   EL FP
Sbjct  1    DPVTQLWKLFRQGYPLCALFNALQPETPLPVDPVSSDDAKICKKSVYDFLLACKSELGFP  60

Query  121  QQDCFLITDLYGDSTTGFIKVIKMVNRVL  149
              + F I+DL+GDSTTGF+KV+K+VNRVL
Sbjct  61   DDELFTISDLFGDSTTGFVKVLKVVNRVL  89


>CDD:459876 pfam00621, RhoGEF, RhoGEF domain.  Guanine nucleotide exchange 
factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous 
(DH) domain. It appears that pfam00169 domains invariably 
occur C-terminal to RhoGEF/DH domains.
Length=176

 Score = 114 bits (288),  Expect = 7e-30, Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 92/189 (49%), Gaps = 28/189 (15%)

Query  182  ILKELLETERDYVHHLQNL---------QALKKELEETGALTGDASHQIFLNLNNLLDFA  232
            ++KELL+TER YV  L+ L         + L +  EE           IF N+  + +  
Sbjct  1    VIKELLQTERSYVRDLEILVEVFLPPNSKPLSESEEE--------IKTIFSNIEEIYELH  52

Query  233  QRFLIRMEQHYALPEDKQNWGELFIQHEEAFRQYEPFISNQMRCDEVCLKEWDKIRSAPR  292
            ++ L  +E+        Q  G++F++    F+ Y  + SN  +  ++ LK+  K     R
Sbjct  53   RQLL--LEELLKEWISIQRIGDIFLKFAPGFKVYSTYCSNYPKALKL-LKKLLKKNPKFR  109

Query  293  PLDLQQMVAQPA----TLNSFFVKPFQRMTKYPLMLMELRKQTED--PDLQADITKAIDT  346
               L+++ A P      LNSF +KP QR+ +YPL+L EL K T    PD + D+ KA++ 
Sbjct  110  AF-LEELEANPECRGLDLNSFLIKPVQRIPRYPLLLKELLKHTPPDHPDYE-DLKKALEA  167

Query  347  IQSVLDSAN  355
            I+ V    N
Sbjct  168  IKEVAKQIN  176



Lambda      K        H        a         alpha
   0.316    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1175685966


Query= TCONS_00031074

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464707 pfam15411, PH_10, Pleckstrin homology domain. This Ple...  108     8e-29


>CDD:464707 pfam15411, PH_10, Pleckstrin homology domain.  This Pleckstrin 
homology domain is found in some fungal species.
Length=120

 Score = 108 bits (271),  Expect = 8e-29, Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 0/71 (0%)

Query  3    SKDKPATTIKGKPRLQLKGRIYMANVTDIVCLQKPGSYRIQIFWKGDPGVVDNFIIRFQN  62
             K   +++ K K RLQLKGRIY++N+T +    KPGSY + I W GD G +++F +RF+N
Sbjct  50   LKKSSSSSSKKKTRLQLKGRIYISNITSVTSSSKPGSYTLTISWSGDDGELESFTLRFRN  109

Query  63   EDVMRKWYKEI  73
            E+ ++ W   +
Sbjct  110  EEQLKLWESAL  120



Lambda      K        H        a         alpha
   0.313    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599678264


Query= TCONS_00031075

Length=907
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464707 pfam15411, PH_10, Pleckstrin homology domain. This Ple...  166     9e-49
CDD:399412 pfam06395, CDC24, CDC24 Calponin. Is a calponin homolo...  148     1e-42
CDD:459876 pfam00621, RhoGEF, RhoGEF domain. Guanine nucleotide e...  115     6e-30


>CDD:464707 pfam15411, PH_10, Pleckstrin homology domain.  This Pleckstrin 
homology domain is found in some fungal species.
Length=120

 Score = 166 bits (423),  Expect = 9e-49, Method: Composition-based stats.
 Identities = 54/123 (44%), Positives = 77/123 (63%), Gaps = 10/123 (8%)

Query  384  SFGELLRFGTFTVLKGDTGKDSEREYHIYLFQRILLCCKDINPNKQKTKLMVSKDKPATT  443
             FGELL     TV K     DSEREYH+YLF++ILLCCK+I+P K+     + K   +++
Sbjct  1    RFGELLLHDKLTVGKDS---DSEREYHVYLFEKILLCCKEISPKKKSKSNSLLKKSSSSS  57

Query  444  IKGKPRLQLKGRIYMANVTDIVCLQKPG-------MSGDPGVVDNFIIRFQNEDVMRKWY  496
             K K RLQLKGRIY++N+T +    KPG        SGD G +++F +RF+NE+ ++ W 
Sbjct  58   SKKKTRLQLKGRIYISNITSVTSSSKPGSYTLTISWSGDDGELESFTLRFRNEEQLKLWE  117

Query  497  KEI  499
              +
Sbjct  118  SAL  120


>CDD:399412 pfam06395, CDC24, CDC24 Calponin.  Is a calponin homology domain.
Length=89

 Score = 148 bits (375),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 45/89 (51%), Positives = 57/89 (64%), Gaps = 0/89 (0%)

Query  61   DPVASLWNCLRNGYPLLTIYNASDPPELLEIDPSKVPEAKRPKAATFKFLQASLQELAFP  120
            DPV  LW   R GYPL  ++NA  P   L +DP    +AK  K + + FL A   EL FP
Sbjct  1    DPVTQLWKLFRQGYPLCALFNALQPETPLPVDPVSSDDAKICKKSVYDFLLACKSELGFP  60

Query  121  QQDCFLITDLYGDSTTGFIKVIKMVNRVL  149
              + F I+DL+GDSTTGF+KV+K+VNRVL
Sbjct  61   DDELFTISDLFGDSTTGFVKVLKVVNRVL  89


>CDD:459876 pfam00621, RhoGEF, RhoGEF domain.  Guanine nucleotide exchange 
factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous 
(DH) domain. It appears that pfam00169 domains invariably 
occur C-terminal to RhoGEF/DH domains.
Length=176

 Score = 115 bits (289),  Expect = 6e-30, Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 92/189 (49%), Gaps = 28/189 (15%)

Query  182  ILKELLETERDYVHHLQNL---------QALKKELEETGALTGDASHQIFLNLNNLLDFA  232
            ++KELL+TER YV  L+ L         + L +  EE           IF N+  + +  
Sbjct  1    VIKELLQTERSYVRDLEILVEVFLPPNSKPLSESEEE--------IKTIFSNIEEIYELH  52

Query  233  QRFLIRMEQHYALPEDKQNWGELFIQHEEAFRQYEPFISNQMRCDEVCLKEWDKIRSAPR  292
            ++ L  +E+        Q  G++F++    F+ Y  + SN  +  ++ LK+  K     R
Sbjct  53   RQLL--LEELLKEWISIQRIGDIFLKFAPGFKVYSTYCSNYPKALKL-LKKLLKKNPKFR  109

Query  293  PLDLQQMVAQPA----TLNSFFVKPFQRMTKYPLMLMELRKQTED--PDLQADITKAIDT  346
               L+++ A P      LNSF +KP QR+ +YPL+L EL K T    PD + D+ KA++ 
Sbjct  110  AF-LEELEANPECRGLDLNSFLIKPVQRIPRYPLLLKELLKHTPPDHPDYE-DLKKALEA  167

Query  347  IQSVLDSAN  355
            I+ V    N
Sbjct  168  IKEVAKQIN  176



Lambda      K        H        a         alpha
   0.315    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1165637368


Query= TCONS_00031076

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  128     1e-33


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 128 bits (324),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 76/324 (23%), Positives = 131/324 (40%), Gaps = 32/324 (10%)

Query  104  ITSAAREYGPTAGIKPLRAAVARLYNEHYRQGKESQYTWENVCIVPGGRAGLIRIAAILG  163
                   YGPT G   LR A+A+          + +     V    G  A +  +  +L 
Sbjct  28   AGGTRNLYGPTDGHPELREALAKFLGRSPVLKLDRE---AAVVFGSGAGANIEALIFLLA  84

Query  164  N--SYLSFPIPDYSAYSEMLTLFKNIAPIPIPLAEEDHYHIHPNKIAEEIARGTSVLLTS  221
            N    +  P P Y++Y  +  L      +  PL + + +H+  + +   +     V+L +
Sbjct  85   NPGDAILVPAPTYASYIRIARLAG-GEVVRYPLYDSNDFHLDFDALEAALKEKPKVVLHT  143

Query  222  NPRNPTGHFVSNDELAQIQDICRDR-ATLILDEFYGGYNYTTDCDGTTISGAANVVDVNQ  280
            +P NPTG   + +EL ++ D+ ++    L++DE Y G+ + +     T +  A       
Sbjct  144  SPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLAEG-----  198

Query  281  DDVLLIDGLTKRFRLPGWRIAWIVGPKEFIDAL--GSAGSYLDGGANVPFQEAAIPMLEP  338
             ++L++   +K F L GWR+ +I+G    I  L   +   Y         Q AA   L  
Sbjct  199  PNLLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARPFYSSTHL----QAAAAAALSD  254

Query  339  S-LVRAEMKALQRHFREKRDYVLKRLHEIGFRVKDVPQATFYIWLDLTSLEPPLPKEANI  397
              LV +E++ +++  +E+RDY+   L   G  V    QA F++   L             
Sbjct  255  PLLVASELEEMRQRIKERRDYLRDGLQAAGLSVLP-SQAGFFLLTGLDPE----------  303

Query  398  SDGLNFFNALLTE-KVIVVPGIFF  420
                     LL E  V V PG   
Sbjct  304  -TAKELAQVLLEEVGVYVTPGSSP  326



Lambda      K        H        a         alpha
   0.319    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00035367

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  74.3    2e-15


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 74.3 bits (183),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 39/178 (22%), Positives = 76/178 (43%), Gaps = 7/178 (4%)

Query  104  ITSAAREYGPTAGIKPLRAAVARLYNEHYRQGKESQYTWENVCIVPGGRAGLIRIAAILG  163
                   YGPT G   LR A+A+          + +     V    G  A +  +  +L 
Sbjct  28   AGGTRNLYGPTDGHPELREALAKFLGRSPVLKLDRE---AAVVFGSGAGANIEALIFLLA  84

Query  164  N--SYLSFPIPDYSAYSEMLTLFKNIAPIPIPLAEEDHYHIHPNKIAEEIARGTSVLLTS  221
            N    +  P P Y++Y  +  L      +  PL + + +H+  + +   +     V+L +
Sbjct  85   NPGDAILVPAPTYASYIRIARLAG-GEVVRYPLYDSNDFHLDFDALEAALKEKPKVVLHT  143

Query  222  NPRNPTGHFVSNDELAQIQDICRDR-ATLILDEFYGGYNYTTDCDGTTISGAANVVDV  278
            +P NPTG   + +EL ++ D+ ++    L++DE Y G+ + +     T +  A   ++
Sbjct  144  SPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLAEGPNL  201



Lambda      K        H        a         alpha
   0.316    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00031077

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  128     1e-33


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 128 bits (324),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 76/324 (23%), Positives = 131/324 (40%), Gaps = 32/324 (10%)

Query  104  ITSAAREYGPTAGIKPLRAAVARLYNEHYRQGKESQYTWENVCIVPGGRAGLIRIAAILG  163
                   YGPT G   LR A+A+          + +     V    G  A +  +  +L 
Sbjct  28   AGGTRNLYGPTDGHPELREALAKFLGRSPVLKLDRE---AAVVFGSGAGANIEALIFLLA  84

Query  164  N--SYLSFPIPDYSAYSEMLTLFKNIAPIPIPLAEEDHYHIHPNKIAEEIARGTSVLLTS  221
            N    +  P P Y++Y  +  L      +  PL + + +H+  + +   +     V+L +
Sbjct  85   NPGDAILVPAPTYASYIRIARLAG-GEVVRYPLYDSNDFHLDFDALEAALKEKPKVVLHT  143

Query  222  NPRNPTGHFVSNDELAQIQDICRDR-ATLILDEFYGGYNYTTDCDGTTISGAANVVDVNQ  280
            +P NPTG   + +EL ++ D+ ++    L++DE Y G+ + +     T +  A       
Sbjct  144  SPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLAEG-----  198

Query  281  DDVLLIDGLTKRFRLPGWRIAWIVGPKEFIDAL--GSAGSYLDGGANVPFQEAAIPMLEP  338
             ++L++   +K F L GWR+ +I+G    I  L   +   Y         Q AA   L  
Sbjct  199  PNLLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARPFYSSTHL----QAAAAAALSD  254

Query  339  S-LVRAEMKALQRHFREKRDYVLKRLHEIGFRVKDVPQATFYIWLDLTSLEPPLPKEANI  397
              LV +E++ +++  +E+RDY+   L   G  V    QA F++   L             
Sbjct  255  PLLVASELEEMRQRIKERRDYLRDGLQAAGLSVLP-SQAGFFLLTGLDPE----------  303

Query  398  SDGLNFFNALLTE-KVIVVPGIFF  420
                     LL E  V V PG   
Sbjct  304  -TAKELAQVLLEEVGVYVTPGSSP  326



Lambda      K        H        a         alpha
   0.319    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00031078

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  128     2e-33


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 128 bits (323),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 76/324 (23%), Positives = 131/324 (40%), Gaps = 32/324 (10%)

Query  129  ITSAAREYGPTAGIKPLRAAVARLYNEHYRQGKESQYTWENVCIVPGGRAGLIRIAAILG  188
                   YGPT G   LR A+A+          + +     V    G  A +  +  +L 
Sbjct  28   AGGTRNLYGPTDGHPELREALAKFLGRSPVLKLDRE---AAVVFGSGAGANIEALIFLLA  84

Query  189  N--SYLSFPIPDYSAYSEMLTLFKNIAPIPIPLAEEDHYHIHPNKIAEEIARGTSVLLTS  246
            N    +  P P Y++Y  +  L      +  PL + + +H+  + +   +     V+L +
Sbjct  85   NPGDAILVPAPTYASYIRIARLAG-GEVVRYPLYDSNDFHLDFDALEAALKEKPKVVLHT  143

Query  247  NPRNPTGHFVSNDELAQIQDICRDR-ATLILDEFYGGYNYTTDCDGTTISGAANVVDVNQ  305
            +P NPTG   + +EL ++ D+ ++    L++DE Y G+ + +     T +  A       
Sbjct  144  SPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLAEG-----  198

Query  306  DDVLLIDGLTKRFRLPGWRIAWIVGPKEFIDAL--GSAGSYLDGGANVPFQEAAIPMLEP  363
             ++L++   +K F L GWR+ +I+G    I  L   +   Y         Q AA   L  
Sbjct  199  PNLLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARPFYSSTHL----QAAAAAALSD  254

Query  364  S-LVRAEMKALQRHFREKRDYVLKRLHEIGFRVKDVPQATFYIWLDLTSLEPPLPKEANI  422
              LV +E++ +++  +E+RDY+   L   G  V    QA F++   L             
Sbjct  255  PLLVASELEEMRQRIKERRDYLRDGLQAAGLSVLP-SQAGFFLLTGLDPE----------  303

Query  423  SDGLNFFNALLTE-KVIVVPGIFF  445
                     LL E  V V PG   
Sbjct  304  -TAKELAQVLLEEVGVYVTPGSSP  326



Lambda      K        H        a         alpha
   0.319    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0779    0.140     1.90     42.6     43.6 

Effective search space used: 637421786


Query= TCONS_00035368

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II  104     4e-26


>CDD:395103 pfam00155, Aminotran_1_2, Aminotransferase class I and II.  
Length=351

 Score = 104 bits (261),  Expect = 4e-26, Method: Composition-based stats.
 Identities = 57/239 (24%), Positives = 101/239 (42%), Gaps = 26/239 (11%)

Query  8    IAPIPIPLAEEDHYHIHPNKIAEEIARGTSVLLTSNPRNPTGHFVSNDELAQIQDICRDR  67
               +  PL + + +H+  + +   +     V+L ++P NPTG   + +EL ++ D+ ++ 
Sbjct  109  GEVVRYPLYDSNDFHLDFDALEAALKEKPKVVLHTSPHNPTGTVATLEELEKLLDLAKEH  168

Query  68   -ATLILDEFYGGYNYTTDCDGTTISGAANVVDVNQDDVLLIDGLTKRFRLPGWRIAWIVG  126
               L++DE Y G+ + +     T +  A        ++L++   +K F L GWR+ +I+G
Sbjct  169  NILLLVDEAYAGFVFGSPDAVATRALLAEG-----PNLLVVGSFSKAFGLAGWRVGYILG  223

Query  127  PKEFIDAL--GSAGSYLDGGANVPFQEAAIPMLEPS-LVRAEMKALQRHFREKRDYVLKR  183
                I  L   +   Y         Q AA   L    LV +E++ +++  +E+RDY+   
Sbjct  224  NAAVISQLRKLARPFYSSTHL----QAAAAAALSDPLLVASELEEMRQRIKERRDYLRDG  279

Query  184  LHEIGFRVKDVPQATFYIWLDLTSLEPPLPKEANISDGLNFFNALLTE-KVIVVPGIFF  241
            L   G  V    QA F++   L                      LL E  V V PG   
Sbjct  280  LQAAGLSVLP-SQAGFFLLTGLDPE-----------TAKELAQVLLEEVGVYVTPGSSP  326



Lambda      K        H        a         alpha
   0.322    0.141    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00031079

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462062 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like. This...  214     9e-71


>CDD:462062 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like.  This family 
contains a number of bacterial and eukaryotic proteins approximately 
400 residues long that resemble ferredoxin and appear 
to have sucrolytic activity.
Length=217

 Score = 214 bits (546),  Expect = 9e-71, Method: Composition-based stats.
 Identities = 88/230 (38%), Positives = 108/230 (47%), Gaps = 68/230 (30%)

Query  1    MPVPDEYHHHEPGEQPTNVLILPAFTVVEQVTPALAPDLIEYFVSRAPTTTTPLRSIPEP  60
            +P    Y       +PT+VL+LP F +V  V P+   DL++ ++    TT TPL S    
Sbjct  56   LPPDSSYRRELSAGEPTDVLLLPDFKLVPNVPPSDVRDLVDDYLLPELTTGTPLTS----  111

Query  61   LTETEGEEQQQQHQQHQQPAPVDISSLTPLRSRPCGHAAVILLCSQRTRDARCGQSAPLL  120
                                            RPC H A+IL+CS  TRD RCG   PLL
Sbjct  112  --------------------------------RPCPHDALILVCSHGTRDKRCGILGPLL  139

Query  121  RREFERHLRALELYRDLDDERPGGVGIYFISHVGGHKYAANVIIYRRRDFEWYRKENPGQ  180
             +EFER L      RDL DERPGGV ++FISHVGGHK+A NVIIY               
Sbjct  140  YKEFEREL------RDLGDERPGGVRVWFISHVGGHKFAGNVIIYPP-------------  180

Query  181  DTLGKTTVEADEGAAQGIWLARVRPEDCENIVKYTVLQGKVVKPGLQLRG  230
                         A QGIW  RV PE  E IV+ T+L+GKV+K     RG
Sbjct  181  -----------GDAGQGIWYGRVTPEHVEGIVEETILKGKVIKE--LYRG  217



Lambda      K        H        a         alpha
   0.318    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00031081

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462062 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like. This...  65.0    2e-14


>CDD:462062 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like.  This family 
contains a number of bacterial and eukaryotic proteins approximately 
400 residues long that resemble ferredoxin and appear 
to have sucrolytic activity.
Length=217

 Score = 65.0 bits (159),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 23/47 (49%), Positives = 28/47 (60%), Gaps = 1/47 (2%)

Query  74   LYGHVNGWATHLLVATGKTDWVRD-VADEKGSLMEAIEKGGLVPSNG  119
            L G    +  H+LV TGKTDW  D + DE GSL  A++KGG  P  G
Sbjct  1    LIGTAKPYDRHVLVETGKTDWPSDILEDEPGSLAAALKKGGGGPPGG  47



Lambda      K        H        a         alpha
   0.317    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00031080

Length=394


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 473769310


Query= TCONS_00035369

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462062 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like. This...  214     9e-71


>CDD:462062 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like.  This family 
contains a number of bacterial and eukaryotic proteins approximately 
400 residues long that resemble ferredoxin and appear 
to have sucrolytic activity.
Length=217

 Score = 214 bits (546),  Expect = 9e-71, Method: Composition-based stats.
 Identities = 88/230 (38%), Positives = 108/230 (47%), Gaps = 68/230 (30%)

Query  1    MPVPDEYHHHEPGEQPTNVLILPAFTVVEQVTPALAPDLIEYFVSRAPTTTTPLRSIPEP  60
            +P    Y       +PT+VL+LP F +V  V P+   DL++ ++    TT TPL S    
Sbjct  56   LPPDSSYRRELSAGEPTDVLLLPDFKLVPNVPPSDVRDLVDDYLLPELTTGTPLTS----  111

Query  61   LTETEGEEQQQQHQQHQQPAPVDISSLTPLRSRPCGHAAVILLCSQRTRDARCGQSAPLL  120
                                            RPC H A+IL+CS  TRD RCG   PLL
Sbjct  112  --------------------------------RPCPHDALILVCSHGTRDKRCGILGPLL  139

Query  121  RREFERHLRALELYRDLDDERPGGVGIYFISHVGGHKYAANVIIYRRRDFEWYRKENPGQ  180
             +EFER L      RDL DERPGGV ++FISHVGGHK+A NVIIY               
Sbjct  140  YKEFEREL------RDLGDERPGGVRVWFISHVGGHKFAGNVIIYPP-------------  180

Query  181  DTLGKTTVEADEGAAQGIWLARVRPEDCENIVKYTVLQGKVVKPGLQLRG  230
                         A QGIW  RV PE  E IV+ T+L+GKV+K     RG
Sbjct  181  -----------GDAGQGIWYGRVTPEHVEGIVEETILKGKVIKE--LYRG  217



Lambda      K        H        a         alpha
   0.318    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00035370

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00035371

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.147    0.574    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00031082

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00035372

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00031085

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00031083

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00031084

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00031086

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.141    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00031087

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00031088

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.141    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00035373

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00031094

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00031090

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00031091

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00035374

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00035375

Length=450


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00031092

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00031093

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00035376

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.128    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00031096

Length=309


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00031095

Length=450


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00035377

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00035378

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00031098

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00031099

Length=720
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460210 pfam01434, Peptidase_M41, Peptidase family M41             227     8e-71
CDD:459627 pfam00004, AAA, ATPase family associated with various ...  180     4e-54


>CDD:460210 pfam01434, Peptidase_M41, Peptidase family M41.  
Length=190

 Score = 227 bits (580),  Expect = 8e-71, Method: Composition-based stats.
 Identities = 89/192 (46%), Positives = 122/192 (64%), Gaps = 14/192 (7%)

Query  498  RIIQDKDKLLTAYHEAGHALVAYFSPSSTPLYKITIVPRGMALGVTHFLPEMDMVSRNYT  557
            R+I +++K + AYHEAGHALV    P + P++K+TI+PRG ALG T FLPE D +     
Sbjct  1    RVISEEEKKIVAYHEAGHALVGLLLPGADPVHKVTIIPRGQALGYTQFLPEEDKLLYTKE  60

Query  558  EYLSDIDVSMGGKAAEELVFGPDKVTSGISADIQQATETAFTLITRFGYSKKLGNVDL--  615
            + L+ I V +GG+AAEEL+FG  +VT+G S D+++AT+ A  ++T FG S KLG V L  
Sbjct  61   QLLARIAVLLGGRAAEELIFG--EVTTGASNDLEKATKIARQMVTEFGMSDKLGPVSLEE  118

Query  616  ----------STNYDSLSSETKQEIESEVRRLVEEARMRATKILTERRHELELLTKALIE  665
                             S ET   I+ EV+RL+EEA  RA +ILTE R ELE L +AL+E
Sbjct  119  SDGNVFLGRGMGKRKPYSEETADIIDEEVKRLLEEAYERAKEILTEHRDELEALAEALLE  178

Query  666  YETLTKEEMEKV  677
             ETL  EE+ ++
Sbjct  179  KETLDAEEIREL  190


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 180 bits (459),  Expect = 4e-54, Method: Composition-based stats.
 Identities = 71/132 (54%), Positives = 87/132 (66%), Gaps = 3/132 (2%)

Query  288  VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEVYVGVGAKRVRELFAQARSKSPAI  347
            +LL GPPGTGKT LA+AVA E G PF  +SGSE    YVG   KR+RELF  A+  +P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  348  IFIDELDAIGAKRNERDAAYVKQTLNQLLTELDGFSQ-TSGVIIIAATNFPQLLDKALTR  406
            IFIDE+DA+   R     +  ++ +NQLLTELDGF+   S VI+IAATN P  LD AL  
Sbjct  61   IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPAL--  118

Query  407  PGRFDRKVVVDL  418
             GRFDR +   L
Sbjct  119  LGRFDRIIEFPL  130



Lambda      K        H        a         alpha
   0.316    0.132    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 910925152


Query= TCONS_00031100

Length=821
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460210 pfam01434, Peptidase_M41, Peptidase family M41             228     1e-70
CDD:459627 pfam00004, AAA, ATPase family associated with various ...  180     9e-54


>CDD:460210 pfam01434, Peptidase_M41, Peptidase family M41.  
Length=190

 Score = 228 bits (584),  Expect = 1e-70, Method: Composition-based stats.
 Identities = 89/192 (46%), Positives = 122/192 (64%), Gaps = 14/192 (7%)

Query  599  RIIQDKDKLLTAYHEAGHALVAYFSPSSTPLYKITIVPRGMALGVTHFLPEMDMVSRNYT  658
            R+I +++K + AYHEAGHALV    P + P++K+TI+PRG ALG T FLPE D +     
Sbjct  1    RVISEEEKKIVAYHEAGHALVGLLLPGADPVHKVTIIPRGQALGYTQFLPEEDKLLYTKE  60

Query  659  EYLSDIDVSMGGKAAEELVFGPDKVTSGISADIQQATETAFTLITRFGYSKKLGNVDL--  716
            + L+ I V +GG+AAEEL+FG  +VT+G S D+++AT+ A  ++T FG S KLG V L  
Sbjct  61   QLLARIAVLLGGRAAEELIFG--EVTTGASNDLEKATKIARQMVTEFGMSDKLGPVSLEE  118

Query  717  ----------STNYDSLSSETKQEIESEVRRLVEEARMRATKILTERRHELELLTKALIE  766
                             S ET   I+ EV+RL+EEA  RA +ILTE R ELE L +AL+E
Sbjct  119  SDGNVFLGRGMGKRKPYSEETADIIDEEVKRLLEEAYERAKEILTEHRDELEALAEALLE  178

Query  767  YETLTKEEMEKV  778
             ETL  EE+ ++
Sbjct  179  KETLDAEEIREL  190


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 180 bits (459),  Expect = 9e-54, Method: Composition-based stats.
 Identities = 71/132 (54%), Positives = 87/132 (66%), Gaps = 3/132 (2%)

Query  389  VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEVYVGVGAKRVRELFAQARSKSPAI  448
            +LL GPPGTGKT LA+AVA E G PF  +SGSE    YVG   KR+RELF  A+  +P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  449  IFIDELDAIGAKRNERDAAYVKQTLNQLLTELDGFSQ-TSGVIIIAATNFPQLLDKALTR  507
            IFIDE+DA+   R     +  ++ +NQLLTELDGF+   S VI+IAATN P  LD AL  
Sbjct  61   IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPAL--  118

Query  508  PGRFDRKVVVDL  519
             GRFDR +   L
Sbjct  119  LGRFDRIIEFPL  130



Lambda      K        H        a         alpha
   0.316    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1042183164


Query= TCONS_00031101

Length=802
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460210 pfam01434, Peptidase_M41, Peptidase family M41             229     6e-71
CDD:459627 pfam00004, AAA, ATPase family associated with various ...  181     5e-54


>CDD:460210 pfam01434, Peptidase_M41, Peptidase family M41.  
Length=190

 Score = 229 bits (585),  Expect = 6e-71, Method: Composition-based stats.
 Identities = 89/192 (46%), Positives = 122/192 (64%), Gaps = 14/192 (7%)

Query  580  RIIQDKDKLLTAYHEAGHALVAYFSPSSTPLYKITIVPRGMALGVTHFLPEMDMVSRNYT  639
            R+I +++K + AYHEAGHALV    P + P++K+TI+PRG ALG T FLPE D +     
Sbjct  1    RVISEEEKKIVAYHEAGHALVGLLLPGADPVHKVTIIPRGQALGYTQFLPEEDKLLYTKE  60

Query  640  EYLSDIDVSMGGKAAEELVFGPDKVTSGISADIQQATETAFTLITRFGYSKKLGNVDL--  697
            + L+ I V +GG+AAEEL+FG  +VT+G S D+++AT+ A  ++T FG S KLG V L  
Sbjct  61   QLLARIAVLLGGRAAEELIFG--EVTTGASNDLEKATKIARQMVTEFGMSDKLGPVSLEE  118

Query  698  ----------STNYDSLSSETKQEIESEVRRLVEEARMRATKILTERRHELELLTKALIE  747
                             S ET   I+ EV+RL+EEA  RA +ILTE R ELE L +AL+E
Sbjct  119  SDGNVFLGRGMGKRKPYSEETADIIDEEVKRLLEEAYERAKEILTEHRDELEALAEALLE  178

Query  748  YETLTKEEMEKV  759
             ETL  EE+ ++
Sbjct  179  KETLDAEEIREL  190


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 181 bits (461),  Expect = 5e-54, Method: Composition-based stats.
 Identities = 71/132 (54%), Positives = 87/132 (66%), Gaps = 3/132 (2%)

Query  370  VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEVYVGVGAKRVRELFAQARSKSPAI  429
            +LL GPPGTGKT LA+AVA E G PF  +SGSE    YVG   KR+RELF  A+  +P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  430  IFIDELDAIGAKRNERDAAYVKQTLNQLLTELDGFSQ-TSGVIIIAATNFPQLLDKALTR  488
            IFIDE+DA+   R     +  ++ +NQLLTELDGF+   S VI+IAATN P  LD AL  
Sbjct  61   IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPAL--  118

Query  489  PGRFDRKVVVDL  500
             GRFDR +   L
Sbjct  119  LGRFDRIIEFPL  130



Lambda      K        H        a         alpha
   0.315    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1030247616


Query= TCONS_00035380

Length=538
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  180     4e-55
CDD:460210 pfam01434, Peptidase_M41, Peptidase family M41             134     3e-37


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 180 bits (458),  Expect = 4e-55, Method: Composition-based stats.
 Identities = 71/132 (54%), Positives = 87/132 (66%), Gaps = 3/132 (2%)

Query  224  VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEVYVGVGAKRVRELFAQARSKSPAI  283
            +LL GPPGTGKT LA+AVA E G PF  +SGSE    YVG   KR+RELF  A+  +P +
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV  60

Query  284  IFIDELDAIGAKRNERDAAYVKQTLNQLLTELDGFSQ-TSGVIIIAATNFPQLLDKALTR  342
            IFIDE+DA+   R     +  ++ +NQLLTELDGF+   S VI+IAATN P  LD AL  
Sbjct  61   IFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNRPDKLDPAL--  118

Query  343  PGRFDRKVVVDL  354
             GRFDR +   L
Sbjct  119  LGRFDRIIEFPL  130


>CDD:460210 pfam01434, Peptidase_M41, Peptidase family M41.  
Length=190

 Score = 134 bits (339),  Expect = 3e-37, Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 64/90 (71%), Gaps = 2/90 (2%)

Query  434  RIIQDKDKLLTAYHEAGHALVAYFSPSSTPLYKITIVPRGMALGVTHFLPEMDMVSRNYT  493
            R+I +++K + AYHEAGHALV    P + P++K+TI+PRG ALG T FLPE D +     
Sbjct  1    RVISEEEKKIVAYHEAGHALVGLLLPGADPVHKVTIIPRGQALGYTQFLPEEDKLLYTKE  60

Query  494  EYLSDIDVSMGGKAAEELVFGPDKVTSGIS  523
            + L+ I V +GG+AAEEL+FG  +VT+G S
Sbjct  61   QLLARIAVLLGGRAAEELIFG--EVTTGAS  88



Lambda      K        H        a         alpha
   0.318    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 676787502


Query= TCONS_00031102

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.130    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00031103

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463393 pfam11911, DUF3429, Protein of unknown function (DUF34...  72.7    1e-17


>CDD:463393 pfam11911, DUF3429, Protein of unknown function (DUF3429).  This 
family of proteins are functionally uncharacterized. This 
protein is found in bacteria and eukaryotes. Proteins in this 
family are typically between 147 to 245 amino acids in length.
Length=141

 Score = 72.7 bits (179),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query  24   LALRAPPRRLSTSEWLVSS--------PTLLLPVEYALISQFLAFTFLYYNDARAAAHGR  75
            LALR           L  S        P LLLP   AL      F  L   D RA   G 
Sbjct  57   LALREGGPAKPDYLRLALSVIPALLAWPALLLPPGAALALLIQGFGALLLVDRRATLRGW  116

Query  76   APHWYGMYRFVLTFVVGASIVASLI  100
             P WY   RFVLT V G S++ +L+
Sbjct  117  LPSWYLRLRFVLTAVAGLSLLLTLL  141



Lambda      K        H        a         alpha
   0.322    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00031104

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.130    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00031105

Length=3187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461974 pfam06650, SHR-BD, SHR-binding domain of vacuolar-sort...  409     2e-130
CDD:465311 pfam16910, VPS13_mid_rpt, Repeating coiled region of V...  367     1e-116
CDD:465309 pfam16908, VPS13, Vacuolar sorting-associated protein ...  343     3e-108
CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 pro...  305     6e-96 
CDD:463646 pfam12624, Chorein_N, N-terminal region of Chorein or ...  178     2e-52 


>CDD:461974 pfam06650, SHR-BD, SHR-binding domain of vacuolar-sorting associated 
protein 13.  SHR-BD is a family of eukaryotic proteins 
found on vacuolar-sorting associated proteins towards the 
C-terminus. In plants, the domain is found to be the region 
which interacts with SHR or the SHORT-ROOT transcription factor, 
a regulator of root-growth and asymmetric cell division 
that separates ground tissue into endodermis and cortex. The 
plant protein containing the SHR-BD is named SHRUBBY or SHBY, 
UniProtKB:Q9FT44.
Length=275

 Score = 409 bits (1053),  Expect = 2e-130, Method: Composition-based stats.
 Identities = 151/282 (54%), Positives = 208/282 (74%), Gaps = 8/282 (3%)

Query  2237  FKVSIYSPYLILNKTGMPMEIQSKAFLQSARSAAGEGLNPDPRHGGRALPYMYAY-QSDD  2295
              KVSIYSPY+ILNKTG+P+ ++SK     A              G R +P M+++   DD
Sbjct  1     LKVSIYSPYVILNKTGLPLIVRSKGNKNKAAGTLESH-----EGGRRLIPLMFSFDTFDD  55

Query  2296  PKNRSILKIGDSAWSKPQSFEALGSNFEVVLSDRQGKSEFHAGVSVTEGEGKYKMTKVVT  2355
              KNR++L+IGDS+WSKP SF+A+G   +VVL    G++E + G+SV+EG GKYK+TK+VT
Sbjct  56    RKNRALLRIGDSSWSKPFSFDAIGQTNDVVLPSPNGQNEVYLGISVSEGRGKYKLTKIVT  115

Query  2356  ISPRFILKNKLSEEILVREPGSSSVLTIKSGNLVPLHFLRQIAEKQLCLCFPGVNNQWSS  2415
             I+PRFI+KNKL E++ +REPGSS ++++  G L+PLH+LR + EKQLC+ FPG N+QWSS
Sbjct  116   IAPRFIIKNKLPEDLEIREPGSSKIISLPPGELIPLHWLRNVEEKQLCIRFPGSNSQWSS  175

Query  2416  PFNIADVGTVHVKLAKANQRQRLIKVDIIMEGATLFIHLSLETRNWPFSMRNESDSEFIF  2475
             PFNI+DVG+ +VK+ + N  Q+L+KV+II+E AT+FI +  E  NWPFS+RN SD EFIF
Sbjct  176   PFNISDVGSTYVKVRRQNSGQKLLKVEIILEDATIFIRIEDEDNNWPFSIRNFSDVEFIF  235

Query  2476  YQANPYVEDDEDDRTSGWRPIRYRLPPRSIMPYAWDYPATKN  2517
             YQ NP +  D ++    ++PI YRLPP+S+MPYAWDYP+ K 
Sbjct  236   YQRNPNLNSDGENN--EYKPIYYRLPPKSVMPYAWDYPSAKQ  275


>CDD:465311 pfam16910, VPS13_mid_rpt, Repeating coiled region of VPS13.  
This repeat is a family of repeating regions of eukaryotic vacuolar 
sorting-associated 13 proteins. This repeating region 
shares a common core element that includes a well-conserved 
P-x4-P-x13-17-G sequence. The exact function of this repeat 
is not known.
Length=236

 Score = 367 bits (945),  Expect = 1e-116, Method: Composition-based stats.
 Identities = 131/236 (56%), Positives = 177/236 (75%), Gaps = 1/236 (0%)

Query  591  EKNPLEGDADSVVRVKMKSIEVIYNPRFLVEIVKFFEPPERHMESIGALLDSAGATVEEI  650
            E NPL+G ADS + VK++ +E+IY+P F+ E++ FF+PPE H+E IGAL+ +A AT+E I
Sbjct  2    ETNPLDGSADSRLTVKLRPLEIIYDPHFIEEVIDFFKPPESHLELIGALMAAAEATLEGI  61

Query  651  RQQTRAGLEFALEEHKKVDAHFDIHAPLIIVPESITQESSLCLILDAGHISVNSELVDRQ  710
            ++QTRAGLE+ALEEHK +D   D+ APLIIVPE  T + S CLILDAGHISV S+LVD+ 
Sbjct  62   KEQTRAGLEYALEEHKTLDLDIDLQAPLIIVPEDYTSKDSPCLILDAGHISVTSDLVDKS  121

Query  711  TMRDLQAKQKRQYVENDYKELEHLLYDRFLLKLDSTQVLIGPGVESTKSQLTSEVMNRNF  770
            T++++++KQ +QY E D KELE L+YD+F LKL  TQVLIGP  E  K  LT +  +   
Sbjct  122  TIKEIKSKQSQQYTEEDLKELESLMYDKFSLKLSDTQVLIGPSGEDWKEALTEDD-SSPL  180

Query  771  HIIDRINVDFVLELCIIPKSTELTRTRISGHLPELHASMSDTKYKGLMKLIDIAIP  826
            HI++ IN+D  LE  I+PK+  L + ++SGHLP LH + SD KYK LM+LID++IP
Sbjct  181  HILEPINLDLTLEKSILPKAPRLPKFKVSGHLPSLHINFSDDKYKSLMRLIDVSIP  236


>CDD:465309 pfam16908, VPS13, Vacuolar sorting-associated protein 13, N-terminal. 
 VPS13 is a family of eukaryotic vacuolar sorting-associated 
13 proteins that lies just downstream from Chorein_N 
family, pfam12624. The exact function of this domain is not 
known.
Length=234

 Score = 343 bits (882),  Expect = 3e-108, Method: Composition-based stats.
 Identities = 128/243 (53%), Positives = 170/243 (70%), Gaps = 14/243 (6%)

Query  139  FTQSLVTAVVDNLQISIKNVHFRYEDSIASPGHPFAVGLTLKELSAVSTDSEWNPTFIQS  198
            FT+SL+T ++DNLQ++IKN+H RYEDS+++PGHPFA G+TL+ELSA STD  W PTFIQ 
Sbjct  1    FTESLITKIIDNLQVTIKNIHIRYEDSVSNPGHPFAFGITLEELSAQSTDENWKPTFIQG  60

Query  199  TSTTTHKLATLGALSVYWNTDAELLGTGRGSDLGAEAQGISHAELIEKLRTFIESEESQ-  257
            TS   HKL  L +LSVYW+TD+E L              +   EL+EK ++ I S+ ++ 
Sbjct  61   TSKIIHKLVELESLSVYWDTDSESL---------ELLGDLDLEELLEKFKSLIASKSNKP  111

Query  258  ---QFMLRPVSGRAGLELDKSGKHD-RPAIKTRLLFDELSFVLDDDQYRDALMLVDLFHY  313
               Q++L+PVSG A L L+K G+ +  P I   L FDE+   LDD QYRD L L+D FH 
Sbjct  112  PDHQYILKPVSGSAKLTLNKKGETETIPKIDLDLEFDEIGLTLDDRQYRDILSLLDSFHR  171

Query  314  FLRHQEYKKLQPKCRPKEDPRAWFRFAGEAVLSKIHDRNRRWSWDYIKERRDDRIAYIHL  373
            FLR Q+Y+K +PK   KE+PRAW+++A  AVL +I +R R+WSWDYIK+RRDDR  YI L
Sbjct  172  FLRRQKYRKYRPKVSVKENPRAWWKYAINAVLEEIRERRRKWSWDYIKKRRDDRKEYIEL  231

Query  374  FKK  376
            +KK
Sbjct  232  YKK  234


>CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 protein C-terminal. 
 VPS13_C is a family of eukaryotic vacuolar sorting-associated 
13 proteins that lies at the C-terminus of the 
members, The exact function of this domain is not known.
Length=175

 Score = 305 bits (784),  Expect = 6e-96, Method: Composition-based stats.
 Identities = 107/177 (60%), Positives = 138/177 (78%), Gaps = 2/177 (1%)

Query  2766  DVYFELLHLQPMQLDISFMRTERVNAENNMQPSNPLMFFVNVISMSMGNINDAPVRLNAL  2825
              +YFELLHLQP++L +SF R+ERVN E +++ SNPL F +N + M++GNI+DAP++LNAL
Sbjct  1     KIYFELLHLQPIKLHLSFSRSERVNLEESLEKSNPLSFLLNSLGMTLGNIDDAPIKLNAL  60

Query  2826  MLENARVSFGILLNNIQSHYTQEFLRQVHVILGSADFLGNPVGLFNNVSSGVAAIFYEPY  2885
              LEN  V+   L N IQ HY+Q+FL Q++ ILGS DFLGNPVGLFNN+SSGV   FYEPY
Sbjct  61    ELENVFVTLPQLQNRIQKHYSQQFLYQLYKILGSLDFLGNPVGLFNNISSGVKDFFYEPY  120

Query  2886  QGLVMTDRPQELGMGIAKGATSFVKKSVFGFSDSMAKFTGSMSKGLAVATLDKEFQD  2942
             QGL+    PQE G+G+AKGA S VK +VFG SDS++K TGS+ KGLA  T+DK++Q 
Sbjct  121   QGLIQG--PQEFGLGLAKGAKSLVKNTVFGVSDSVSKITGSIGKGLAALTMDKQYQQ  175


>CDD:463646 pfam12624, Chorein_N, N-terminal region of Chorein or VPS13. 
 Although mutations in the full-length vacuolar protein sorting 
13A (VPS13A) protein in vertebrates lead to the disease 
of chorea-acanthocytosis, the exact function of any of the regions 
within the protein is not yet known. This region is the 
proposed leucine zipper at the N-terminus. The full-length 
protein is a transmembrane protein with a presumed role in 
vesicle-mediated sorting and intracellular protein transport.
Length=116

 Score = 178 bits (454),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 69/116 (59%), Positives = 90/116 (78%), Gaps = 1/116 (1%)

Query  2    LEGLVANLLNRFLGYYVKNFDAKQLNIGIWSGDVKLRNLELRREALDQLHLPLNVVEGHL  61
            LE LVA+LLNR+LG YV+N D  QL +G+WSGDV L NL+L++EALD+L LP+ V  GH+
Sbjct  1    LESLVASLLNRYLGEYVENLDPDQLKVGLWSGDVVLENLKLKKEALDKLDLPIEVKSGHI  60

Query  62   GELTLSIPWSNLRGKPVKVEIEDVFLLAAPK-EDADYDPEEEERRAYNLKMEKIES  116
            G+LTL IPW+NL+ +PV +EIEDV+LLA PK E  +YD EEEE+R    K EK+ +
Sbjct  61   GKLTLKIPWTNLKSEPVVIEIEDVYLLAVPKDESEEYDEEEEEKRELAAKKEKLAA  116



Lambda      K        H        a         alpha
   0.317    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3880794076


Query= TCONS_00031106

Length=3170
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461974 pfam06650, SHR-BD, SHR-binding domain of vacuolar-sort...  409     2e-130
CDD:465311 pfam16910, VPS13_mid_rpt, Repeating coiled region of V...  367     1e-116
CDD:465309 pfam16908, VPS13, Vacuolar sorting-associated protein ...  343     4e-108
CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 pro...  305     9e-96 
CDD:463646 pfam12624, Chorein_N, N-terminal region of Chorein or ...  178     3e-52 


>CDD:461974 pfam06650, SHR-BD, SHR-binding domain of vacuolar-sorting associated 
protein 13.  SHR-BD is a family of eukaryotic proteins 
found on vacuolar-sorting associated proteins towards the 
C-terminus. In plants, the domain is found to be the region 
which interacts with SHR or the SHORT-ROOT transcription factor, 
a regulator of root-growth and asymmetric cell division 
that separates ground tissue into endodermis and cortex. The 
plant protein containing the SHR-BD is named SHRUBBY or SHBY, 
UniProtKB:Q9FT44.
Length=275

 Score = 409 bits (1052),  Expect = 2e-130, Method: Composition-based stats.
 Identities = 151/282 (54%), Positives = 208/282 (74%), Gaps = 8/282 (3%)

Query  2237  FKVSIYSPYLILNKTGMPMEIQSKAFLQSARSAAGEGLNPDPRHGGRALPYMYAY-QSDD  2295
              KVSIYSPY+ILNKTG+P+ ++SK     A              G R +P M+++   DD
Sbjct  1     LKVSIYSPYVILNKTGLPLIVRSKGNKNKAAGTLESH-----EGGRRLIPLMFSFDTFDD  55

Query  2296  PKNRSILKIGDSAWSKPQSFEALGSNFEVVLSDRQGKSEFHAGVSVTEGEGKYKMTKVVT  2355
              KNR++L+IGDS+WSKP SF+A+G   +VVL    G++E + G+SV+EG GKYK+TK+VT
Sbjct  56    RKNRALLRIGDSSWSKPFSFDAIGQTNDVVLPSPNGQNEVYLGISVSEGRGKYKLTKIVT  115

Query  2356  ISPRFILKNKLSEEILVREPGSSSVLTIKSGNLVPLHFLRQIAEKQLCLCFPGVNNQWSS  2415
             I+PRFI+KNKL E++ +REPGSS ++++  G L+PLH+LR + EKQLC+ FPG N+QWSS
Sbjct  116   IAPRFIIKNKLPEDLEIREPGSSKIISLPPGELIPLHWLRNVEEKQLCIRFPGSNSQWSS  175

Query  2416  PFNIADVGTVHVKLAKANQRQRLIKVDIIMEGATLFIHLSLETRNWPFSMRNESDSEFIF  2475
             PFNI+DVG+ +VK+ + N  Q+L+KV+II+E AT+FI +  E  NWPFS+RN SD EFIF
Sbjct  176   PFNISDVGSTYVKVRRQNSGQKLLKVEIILEDATIFIRIEDEDNNWPFSIRNFSDVEFIF  235

Query  2476  YQANPYVEDDEDDRTSGWRPIRYRLPPRSIMPYAWDYPATKN  2517
             YQ NP +  D ++    ++PI YRLPP+S+MPYAWDYP+ K 
Sbjct  236   YQRNPNLNSDGENN--EYKPIYYRLPPKSVMPYAWDYPSAKQ  275


>CDD:465311 pfam16910, VPS13_mid_rpt, Repeating coiled region of VPS13.  
This repeat is a family of repeating regions of eukaryotic vacuolar 
sorting-associated 13 proteins. This repeating region 
shares a common core element that includes a well-conserved 
P-x4-P-x13-17-G sequence. The exact function of this repeat 
is not known.
Length=236

 Score = 367 bits (945),  Expect = 1e-116, Method: Composition-based stats.
 Identities = 131/236 (56%), Positives = 177/236 (75%), Gaps = 1/236 (0%)

Query  591  EKNPLEGDADSVVRVKMKSIEVIYNPRFLVEIVKFFEPPERHMESIGALLDSAGATVEEI  650
            E NPL+G ADS + VK++ +E+IY+P F+ E++ FF+PPE H+E IGAL+ +A AT+E I
Sbjct  2    ETNPLDGSADSRLTVKLRPLEIIYDPHFIEEVIDFFKPPESHLELIGALMAAAEATLEGI  61

Query  651  RQQTRAGLEFALEEHKKVDAHFDIHAPLIIVPESITQESSLCLILDAGHISVNSELVDRQ  710
            ++QTRAGLE+ALEEHK +D   D+ APLIIVPE  T + S CLILDAGHISV S+LVD+ 
Sbjct  62   KEQTRAGLEYALEEHKTLDLDIDLQAPLIIVPEDYTSKDSPCLILDAGHISVTSDLVDKS  121

Query  711  TMRDLQAKQKRQYVENDYKELEHLLYDRFLLKLDSTQVLIGPGVESTKSQLTSEVMNRNF  770
            T++++++KQ +QY E D KELE L+YD+F LKL  TQVLIGP  E  K  LT +  +   
Sbjct  122  TIKEIKSKQSQQYTEEDLKELESLMYDKFSLKLSDTQVLIGPSGEDWKEALTEDD-SSPL  180

Query  771  HIIDRINVDFVLELCIIPKSTELTRTRISGHLPELHASMSDTKYKGLMKLIDIAIP  826
            HI++ IN+D  LE  I+PK+  L + ++SGHLP LH + SD KYK LM+LID++IP
Sbjct  181  HILEPINLDLTLEKSILPKAPRLPKFKVSGHLPSLHINFSDDKYKSLMRLIDVSIP  236


>CDD:465309 pfam16908, VPS13, Vacuolar sorting-associated protein 13, N-terminal. 
 VPS13 is a family of eukaryotic vacuolar sorting-associated 
13 proteins that lies just downstream from Chorein_N 
family, pfam12624. The exact function of this domain is not 
known.
Length=234

 Score = 343 bits (882),  Expect = 4e-108, Method: Composition-based stats.
 Identities = 128/243 (53%), Positives = 170/243 (70%), Gaps = 14/243 (6%)

Query  139  FTQSLVTAVVDNLQISIKNVHFRYEDSIASPGHPFAVGLTLKELSAVSTDSEWNPTFIQS  198
            FT+SL+T ++DNLQ++IKN+H RYEDS+++PGHPFA G+TL+ELSA STD  W PTFIQ 
Sbjct  1    FTESLITKIIDNLQVTIKNIHIRYEDSVSNPGHPFAFGITLEELSAQSTDENWKPTFIQG  60

Query  199  TSTTTHKLATLGALSVYWNTDAELLGTGRGSDLGAEAQGISHAELIEKLRTFIESEESQ-  257
            TS   HKL  L +LSVYW+TD+E L              +   EL+EK ++ I S+ ++ 
Sbjct  61   TSKIIHKLVELESLSVYWDTDSESL---------ELLGDLDLEELLEKFKSLIASKSNKP  111

Query  258  ---QFMLRPVSGRAGLELDKSGKHD-RPAIKTRLLFDELSFVLDDDQYRDALMLVDLFHY  313
               Q++L+PVSG A L L+K G+ +  P I   L FDE+   LDD QYRD L L+D FH 
Sbjct  112  PDHQYILKPVSGSAKLTLNKKGETETIPKIDLDLEFDEIGLTLDDRQYRDILSLLDSFHR  171

Query  314  FLRHQEYKKLQPKCRPKEDPRAWFRFAGEAVLSKIHDRNRRWSWDYIKERRDDRIAYIHL  373
            FLR Q+Y+K +PK   KE+PRAW+++A  AVL +I +R R+WSWDYIK+RRDDR  YI L
Sbjct  172  FLRRQKYRKYRPKVSVKENPRAWWKYAINAVLEEIRERRRKWSWDYIKKRRDDRKEYIEL  231

Query  374  FKK  376
            +KK
Sbjct  232  YKK  234


>CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 protein C-terminal. 
 VPS13_C is a family of eukaryotic vacuolar sorting-associated 
13 proteins that lies at the C-terminus of the 
members, The exact function of this domain is not known.
Length=175

 Score = 305 bits (783),  Expect = 9e-96, Method: Composition-based stats.
 Identities = 107/177 (60%), Positives = 138/177 (78%), Gaps = 2/177 (1%)

Query  2766  DVYFELLHLQPMQLDISFMRTERVNAENNMQPSNPLMFFVNVISMSMGNINDAPVRLNAL  2825
              +YFELLHLQP++L +SF R+ERVN E +++ SNPL F +N + M++GNI+DAP++LNAL
Sbjct  1     KIYFELLHLQPIKLHLSFSRSERVNLEESLEKSNPLSFLLNSLGMTLGNIDDAPIKLNAL  60

Query  2826  MLENARVSFGILLNNIQSHYTQEFLRQVHVILGSADFLGNPVGLFNNVSSGVAAIFYEPY  2885
              LEN  V+   L N IQ HY+Q+FL Q++ ILGS DFLGNPVGLFNN+SSGV   FYEPY
Sbjct  61    ELENVFVTLPQLQNRIQKHYSQQFLYQLYKILGSLDFLGNPVGLFNNISSGVKDFFYEPY  120

Query  2886  QGLVMTDRPQELGMGIAKGATSFVKKSVFGFSDSMAKFTGSMSKGLAVATLDKEFQD  2942
             QGL+    PQE G+G+AKGA S VK +VFG SDS++K TGS+ KGLA  T+DK++Q 
Sbjct  121   QGLIQG--PQEFGLGLAKGAKSLVKNTVFGVSDSVSKITGSIGKGLAALTMDKQYQQ  175


>CDD:463646 pfam12624, Chorein_N, N-terminal region of Chorein or VPS13. 
 Although mutations in the full-length vacuolar protein sorting 
13A (VPS13A) protein in vertebrates lead to the disease 
of chorea-acanthocytosis, the exact function of any of the regions 
within the protein is not yet known. This region is the 
proposed leucine zipper at the N-terminus. The full-length 
protein is a transmembrane protein with a presumed role in 
vesicle-mediated sorting and intracellular protein transport.
Length=116

 Score = 178 bits (453),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 69/116 (59%), Positives = 90/116 (78%), Gaps = 1/116 (1%)

Query  2    LEGLVANLLNRFLGYYVKNFDAKQLNIGIWSGDVKLRNLELRREALDQLHLPLNVVEGHL  61
            LE LVA+LLNR+LG YV+N D  QL +G+WSGDV L NL+L++EALD+L LP+ V  GH+
Sbjct  1    LESLVASLLNRYLGEYVENLDPDQLKVGLWSGDVVLENLKLKKEALDKLDLPIEVKSGHI  60

Query  62   GELTLSIPWSNLRGKPVKVEIEDVFLLAAPK-EDADYDPEEEERRAYNLKMEKIES  116
            G+LTL IPW+NL+ +PV +EIEDV+LLA PK E  +YD EEEE+R    K EK+ +
Sbjct  61   GKLTLKIPWTNLKSEPVVIEIEDVYLLAVPKDESEEYDEEEEEKRELAAKKEKLAA  116



Lambda      K        H        a         alpha
   0.317    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3859394952


Query= TCONS_00031107

Length=3170
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461974 pfam06650, SHR-BD, SHR-binding domain of vacuolar-sort...  409     2e-130
CDD:465311 pfam16910, VPS13_mid_rpt, Repeating coiled region of V...  367     1e-116
CDD:465309 pfam16908, VPS13, Vacuolar sorting-associated protein ...  343     4e-108
CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 pro...  305     9e-96 
CDD:463646 pfam12624, Chorein_N, N-terminal region of Chorein or ...  178     3e-52 


>CDD:461974 pfam06650, SHR-BD, SHR-binding domain of vacuolar-sorting associated 
protein 13.  SHR-BD is a family of eukaryotic proteins 
found on vacuolar-sorting associated proteins towards the 
C-terminus. In plants, the domain is found to be the region 
which interacts with SHR or the SHORT-ROOT transcription factor, 
a regulator of root-growth and asymmetric cell division 
that separates ground tissue into endodermis and cortex. The 
plant protein containing the SHR-BD is named SHRUBBY or SHBY, 
UniProtKB:Q9FT44.
Length=275

 Score = 409 bits (1052),  Expect = 2e-130, Method: Composition-based stats.
 Identities = 151/282 (54%), Positives = 208/282 (74%), Gaps = 8/282 (3%)

Query  2237  FKVSIYSPYLILNKTGMPMEIQSKAFLQSARSAAGEGLNPDPRHGGRALPYMYAY-QSDD  2295
              KVSIYSPY+ILNKTG+P+ ++SK     A              G R +P M+++   DD
Sbjct  1     LKVSIYSPYVILNKTGLPLIVRSKGNKNKAAGTLESH-----EGGRRLIPLMFSFDTFDD  55

Query  2296  PKNRSILKIGDSAWSKPQSFEALGSNFEVVLSDRQGKSEFHAGVSVTEGEGKYKMTKVVT  2355
              KNR++L+IGDS+WSKP SF+A+G   +VVL    G++E + G+SV+EG GKYK+TK+VT
Sbjct  56    RKNRALLRIGDSSWSKPFSFDAIGQTNDVVLPSPNGQNEVYLGISVSEGRGKYKLTKIVT  115

Query  2356  ISPRFILKNKLSEEILVREPGSSSVLTIKSGNLVPLHFLRQIAEKQLCLCFPGVNNQWSS  2415
             I+PRFI+KNKL E++ +REPGSS ++++  G L+PLH+LR + EKQLC+ FPG N+QWSS
Sbjct  116   IAPRFIIKNKLPEDLEIREPGSSKIISLPPGELIPLHWLRNVEEKQLCIRFPGSNSQWSS  175

Query  2416  PFNIADVGTVHVKLAKANQRQRLIKVDIIMEGATLFIHLSLETRNWPFSMRNESDSEFIF  2475
             PFNI+DVG+ +VK+ + N  Q+L+KV+II+E AT+FI +  E  NWPFS+RN SD EFIF
Sbjct  176   PFNISDVGSTYVKVRRQNSGQKLLKVEIILEDATIFIRIEDEDNNWPFSIRNFSDVEFIF  235

Query  2476  YQANPYVEDDEDDRTSGWRPIRYRLPPRSIMPYAWDYPATKN  2517
             YQ NP +  D ++    ++PI YRLPP+S+MPYAWDYP+ K 
Sbjct  236   YQRNPNLNSDGENN--EYKPIYYRLPPKSVMPYAWDYPSAKQ  275


>CDD:465311 pfam16910, VPS13_mid_rpt, Repeating coiled region of VPS13.  
This repeat is a family of repeating regions of eukaryotic vacuolar 
sorting-associated 13 proteins. This repeating region 
shares a common core element that includes a well-conserved 
P-x4-P-x13-17-G sequence. The exact function of this repeat 
is not known.
Length=236

 Score = 367 bits (945),  Expect = 1e-116, Method: Composition-based stats.
 Identities = 131/236 (56%), Positives = 177/236 (75%), Gaps = 1/236 (0%)

Query  591  EKNPLEGDADSVVRVKMKSIEVIYNPRFLVEIVKFFEPPERHMESIGALLDSAGATVEEI  650
            E NPL+G ADS + VK++ +E+IY+P F+ E++ FF+PPE H+E IGAL+ +A AT+E I
Sbjct  2    ETNPLDGSADSRLTVKLRPLEIIYDPHFIEEVIDFFKPPESHLELIGALMAAAEATLEGI  61

Query  651  RQQTRAGLEFALEEHKKVDAHFDIHAPLIIVPESITQESSLCLILDAGHISVNSELVDRQ  710
            ++QTRAGLE+ALEEHK +D   D+ APLIIVPE  T + S CLILDAGHISV S+LVD+ 
Sbjct  62   KEQTRAGLEYALEEHKTLDLDIDLQAPLIIVPEDYTSKDSPCLILDAGHISVTSDLVDKS  121

Query  711  TMRDLQAKQKRQYVENDYKELEHLLYDRFLLKLDSTQVLIGPGVESTKSQLTSEVMNRNF  770
            T++++++KQ +QY E D KELE L+YD+F LKL  TQVLIGP  E  K  LT +  +   
Sbjct  122  TIKEIKSKQSQQYTEEDLKELESLMYDKFSLKLSDTQVLIGPSGEDWKEALTEDD-SSPL  180

Query  771  HIIDRINVDFVLELCIIPKSTELTRTRISGHLPELHASMSDTKYKGLMKLIDIAIP  826
            HI++ IN+D  LE  I+PK+  L + ++SGHLP LH + SD KYK LM+LID++IP
Sbjct  181  HILEPINLDLTLEKSILPKAPRLPKFKVSGHLPSLHINFSDDKYKSLMRLIDVSIP  236


>CDD:465309 pfam16908, VPS13, Vacuolar sorting-associated protein 13, N-terminal. 
 VPS13 is a family of eukaryotic vacuolar sorting-associated 
13 proteins that lies just downstream from Chorein_N 
family, pfam12624. The exact function of this domain is not 
known.
Length=234

 Score = 343 bits (882),  Expect = 4e-108, Method: Composition-based stats.
 Identities = 128/243 (53%), Positives = 170/243 (70%), Gaps = 14/243 (6%)

Query  139  FTQSLVTAVVDNLQISIKNVHFRYEDSIASPGHPFAVGLTLKELSAVSTDSEWNPTFIQS  198
            FT+SL+T ++DNLQ++IKN+H RYEDS+++PGHPFA G+TL+ELSA STD  W PTFIQ 
Sbjct  1    FTESLITKIIDNLQVTIKNIHIRYEDSVSNPGHPFAFGITLEELSAQSTDENWKPTFIQG  60

Query  199  TSTTTHKLATLGALSVYWNTDAELLGTGRGSDLGAEAQGISHAELIEKLRTFIESEESQ-  257
            TS   HKL  L +LSVYW+TD+E L              +   EL+EK ++ I S+ ++ 
Sbjct  61   TSKIIHKLVELESLSVYWDTDSESL---------ELLGDLDLEELLEKFKSLIASKSNKP  111

Query  258  ---QFMLRPVSGRAGLELDKSGKHD-RPAIKTRLLFDELSFVLDDDQYRDALMLVDLFHY  313
               Q++L+PVSG A L L+K G+ +  P I   L FDE+   LDD QYRD L L+D FH 
Sbjct  112  PDHQYILKPVSGSAKLTLNKKGETETIPKIDLDLEFDEIGLTLDDRQYRDILSLLDSFHR  171

Query  314  FLRHQEYKKLQPKCRPKEDPRAWFRFAGEAVLSKIHDRNRRWSWDYIKERRDDRIAYIHL  373
            FLR Q+Y+K +PK   KE+PRAW+++A  AVL +I +R R+WSWDYIK+RRDDR  YI L
Sbjct  172  FLRRQKYRKYRPKVSVKENPRAWWKYAINAVLEEIRERRRKWSWDYIKKRRDDRKEYIEL  231

Query  374  FKK  376
            +KK
Sbjct  232  YKK  234


>CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 protein C-terminal. 
 VPS13_C is a family of eukaryotic vacuolar sorting-associated 
13 proteins that lies at the C-terminus of the 
members, The exact function of this domain is not known.
Length=175

 Score = 305 bits (783),  Expect = 9e-96, Method: Composition-based stats.
 Identities = 107/177 (60%), Positives = 138/177 (78%), Gaps = 2/177 (1%)

Query  2766  DVYFELLHLQPMQLDISFMRTERVNAENNMQPSNPLMFFVNVISMSMGNINDAPVRLNAL  2825
              +YFELLHLQP++L +SF R+ERVN E +++ SNPL F +N + M++GNI+DAP++LNAL
Sbjct  1     KIYFELLHLQPIKLHLSFSRSERVNLEESLEKSNPLSFLLNSLGMTLGNIDDAPIKLNAL  60

Query  2826  MLENARVSFGILLNNIQSHYTQEFLRQVHVILGSADFLGNPVGLFNNVSSGVAAIFYEPY  2885
              LEN  V+   L N IQ HY+Q+FL Q++ ILGS DFLGNPVGLFNN+SSGV   FYEPY
Sbjct  61    ELENVFVTLPQLQNRIQKHYSQQFLYQLYKILGSLDFLGNPVGLFNNISSGVKDFFYEPY  120

Query  2886  QGLVMTDRPQELGMGIAKGATSFVKKSVFGFSDSMAKFTGSMSKGLAVATLDKEFQD  2942
             QGL+    PQE G+G+AKGA S VK +VFG SDS++K TGS+ KGLA  T+DK++Q 
Sbjct  121   QGLIQG--PQEFGLGLAKGAKSLVKNTVFGVSDSVSKITGSIGKGLAALTMDKQYQQ  175


>CDD:463646 pfam12624, Chorein_N, N-terminal region of Chorein or VPS13. 
 Although mutations in the full-length vacuolar protein sorting 
13A (VPS13A) protein in vertebrates lead to the disease 
of chorea-acanthocytosis, the exact function of any of the regions 
within the protein is not yet known. This region is the 
proposed leucine zipper at the N-terminus. The full-length 
protein is a transmembrane protein with a presumed role in 
vesicle-mediated sorting and intracellular protein transport.
Length=116

 Score = 178 bits (453),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 69/116 (59%), Positives = 90/116 (78%), Gaps = 1/116 (1%)

Query  2    LEGLVANLLNRFLGYYVKNFDAKQLNIGIWSGDVKLRNLELRREALDQLHLPLNVVEGHL  61
            LE LVA+LLNR+LG YV+N D  QL +G+WSGDV L NL+L++EALD+L LP+ V  GH+
Sbjct  1    LESLVASLLNRYLGEYVENLDPDQLKVGLWSGDVVLENLKLKKEALDKLDLPIEVKSGHI  60

Query  62   GELTLSIPWSNLRGKPVKVEIEDVFLLAAPK-EDADYDPEEEERRAYNLKMEKIES  116
            G+LTL IPW+NL+ +PV +EIEDV+LLA PK E  +YD EEEE+R    K EK+ +
Sbjct  61   GKLTLKIPWTNLKSEPVVIEIEDVYLLAVPKDESEEYDEEEEEKRELAAKKEKLAA  116



Lambda      K        H        a         alpha
   0.317    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3859394952


Query= TCONS_00031109

Length=3187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461974 pfam06650, SHR-BD, SHR-binding domain of vacuolar-sort...  409     2e-130
CDD:465311 pfam16910, VPS13_mid_rpt, Repeating coiled region of V...  367     1e-116
CDD:465309 pfam16908, VPS13, Vacuolar sorting-associated protein ...  343     3e-108
CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 pro...  305     6e-96 
CDD:463646 pfam12624, Chorein_N, N-terminal region of Chorein or ...  178     2e-52 


>CDD:461974 pfam06650, SHR-BD, SHR-binding domain of vacuolar-sorting associated 
protein 13.  SHR-BD is a family of eukaryotic proteins 
found on vacuolar-sorting associated proteins towards the 
C-terminus. In plants, the domain is found to be the region 
which interacts with SHR or the SHORT-ROOT transcription factor, 
a regulator of root-growth and asymmetric cell division 
that separates ground tissue into endodermis and cortex. The 
plant protein containing the SHR-BD is named SHRUBBY or SHBY, 
UniProtKB:Q9FT44.
Length=275

 Score = 409 bits (1053),  Expect = 2e-130, Method: Composition-based stats.
 Identities = 151/282 (54%), Positives = 208/282 (74%), Gaps = 8/282 (3%)

Query  2237  FKVSIYSPYLILNKTGMPMEIQSKAFLQSARSAAGEGLNPDPRHGGRALPYMYAY-QSDD  2295
              KVSIYSPY+ILNKTG+P+ ++SK     A              G R +P M+++   DD
Sbjct  1     LKVSIYSPYVILNKTGLPLIVRSKGNKNKAAGTLESH-----EGGRRLIPLMFSFDTFDD  55

Query  2296  PKNRSILKIGDSAWSKPQSFEALGSNFEVVLSDRQGKSEFHAGVSVTEGEGKYKMTKVVT  2355
              KNR++L+IGDS+WSKP SF+A+G   +VVL    G++E + G+SV+EG GKYK+TK+VT
Sbjct  56    RKNRALLRIGDSSWSKPFSFDAIGQTNDVVLPSPNGQNEVYLGISVSEGRGKYKLTKIVT  115

Query  2356  ISPRFILKNKLSEEILVREPGSSSVLTIKSGNLVPLHFLRQIAEKQLCLCFPGVNNQWSS  2415
             I+PRFI+KNKL E++ +REPGSS ++++  G L+PLH+LR + EKQLC+ FPG N+QWSS
Sbjct  116   IAPRFIIKNKLPEDLEIREPGSSKIISLPPGELIPLHWLRNVEEKQLCIRFPGSNSQWSS  175

Query  2416  PFNIADVGTVHVKLAKANQRQRLIKVDIIMEGATLFIHLSLETRNWPFSMRNESDSEFIF  2475
             PFNI+DVG+ +VK+ + N  Q+L+KV+II+E AT+FI +  E  NWPFS+RN SD EFIF
Sbjct  176   PFNISDVGSTYVKVRRQNSGQKLLKVEIILEDATIFIRIEDEDNNWPFSIRNFSDVEFIF  235

Query  2476  YQANPYVEDDEDDRTSGWRPIRYRLPPRSIMPYAWDYPATKN  2517
             YQ NP +  D ++    ++PI YRLPP+S+MPYAWDYP+ K 
Sbjct  236   YQRNPNLNSDGENN--EYKPIYYRLPPKSVMPYAWDYPSAKQ  275


>CDD:465311 pfam16910, VPS13_mid_rpt, Repeating coiled region of VPS13.  
This repeat is a family of repeating regions of eukaryotic vacuolar 
sorting-associated 13 proteins. This repeating region 
shares a common core element that includes a well-conserved 
P-x4-P-x13-17-G sequence. The exact function of this repeat 
is not known.
Length=236

 Score = 367 bits (945),  Expect = 1e-116, Method: Composition-based stats.
 Identities = 131/236 (56%), Positives = 177/236 (75%), Gaps = 1/236 (0%)

Query  591  EKNPLEGDADSVVRVKMKSIEVIYNPRFLVEIVKFFEPPERHMESIGALLDSAGATVEEI  650
            E NPL+G ADS + VK++ +E+IY+P F+ E++ FF+PPE H+E IGAL+ +A AT+E I
Sbjct  2    ETNPLDGSADSRLTVKLRPLEIIYDPHFIEEVIDFFKPPESHLELIGALMAAAEATLEGI  61

Query  651  RQQTRAGLEFALEEHKKVDAHFDIHAPLIIVPESITQESSLCLILDAGHISVNSELVDRQ  710
            ++QTRAGLE+ALEEHK +D   D+ APLIIVPE  T + S CLILDAGHISV S+LVD+ 
Sbjct  62   KEQTRAGLEYALEEHKTLDLDIDLQAPLIIVPEDYTSKDSPCLILDAGHISVTSDLVDKS  121

Query  711  TMRDLQAKQKRQYVENDYKELEHLLYDRFLLKLDSTQVLIGPGVESTKSQLTSEVMNRNF  770
            T++++++KQ +QY E D KELE L+YD+F LKL  TQVLIGP  E  K  LT +  +   
Sbjct  122  TIKEIKSKQSQQYTEEDLKELESLMYDKFSLKLSDTQVLIGPSGEDWKEALTEDD-SSPL  180

Query  771  HIIDRINVDFVLELCIIPKSTELTRTRISGHLPELHASMSDTKYKGLMKLIDIAIP  826
            HI++ IN+D  LE  I+PK+  L + ++SGHLP LH + SD KYK LM+LID++IP
Sbjct  181  HILEPINLDLTLEKSILPKAPRLPKFKVSGHLPSLHINFSDDKYKSLMRLIDVSIP  236


>CDD:465309 pfam16908, VPS13, Vacuolar sorting-associated protein 13, N-terminal. 
 VPS13 is a family of eukaryotic vacuolar sorting-associated 
13 proteins that lies just downstream from Chorein_N 
family, pfam12624. The exact function of this domain is not 
known.
Length=234

 Score = 343 bits (882),  Expect = 3e-108, Method: Composition-based stats.
 Identities = 128/243 (53%), Positives = 170/243 (70%), Gaps = 14/243 (6%)

Query  139  FTQSLVTAVVDNLQISIKNVHFRYEDSIASPGHPFAVGLTLKELSAVSTDSEWNPTFIQS  198
            FT+SL+T ++DNLQ++IKN+H RYEDS+++PGHPFA G+TL+ELSA STD  W PTFIQ 
Sbjct  1    FTESLITKIIDNLQVTIKNIHIRYEDSVSNPGHPFAFGITLEELSAQSTDENWKPTFIQG  60

Query  199  TSTTTHKLATLGALSVYWNTDAELLGTGRGSDLGAEAQGISHAELIEKLRTFIESEESQ-  257
            TS   HKL  L +LSVYW+TD+E L              +   EL+EK ++ I S+ ++ 
Sbjct  61   TSKIIHKLVELESLSVYWDTDSESL---------ELLGDLDLEELLEKFKSLIASKSNKP  111

Query  258  ---QFMLRPVSGRAGLELDKSGKHD-RPAIKTRLLFDELSFVLDDDQYRDALMLVDLFHY  313
               Q++L+PVSG A L L+K G+ +  P I   L FDE+   LDD QYRD L L+D FH 
Sbjct  112  PDHQYILKPVSGSAKLTLNKKGETETIPKIDLDLEFDEIGLTLDDRQYRDILSLLDSFHR  171

Query  314  FLRHQEYKKLQPKCRPKEDPRAWFRFAGEAVLSKIHDRNRRWSWDYIKERRDDRIAYIHL  373
            FLR Q+Y+K +PK   KE+PRAW+++A  AVL +I +R R+WSWDYIK+RRDDR  YI L
Sbjct  172  FLRRQKYRKYRPKVSVKENPRAWWKYAINAVLEEIRERRRKWSWDYIKKRRDDRKEYIEL  231

Query  374  FKK  376
            +KK
Sbjct  232  YKK  234


>CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 protein C-terminal. 
 VPS13_C is a family of eukaryotic vacuolar sorting-associated 
13 proteins that lies at the C-terminus of the 
members, The exact function of this domain is not known.
Length=175

 Score = 305 bits (784),  Expect = 6e-96, Method: Composition-based stats.
 Identities = 107/177 (60%), Positives = 138/177 (78%), Gaps = 2/177 (1%)

Query  2766  DVYFELLHLQPMQLDISFMRTERVNAENNMQPSNPLMFFVNVISMSMGNINDAPVRLNAL  2825
              +YFELLHLQP++L +SF R+ERVN E +++ SNPL F +N + M++GNI+DAP++LNAL
Sbjct  1     KIYFELLHLQPIKLHLSFSRSERVNLEESLEKSNPLSFLLNSLGMTLGNIDDAPIKLNAL  60

Query  2826  MLENARVSFGILLNNIQSHYTQEFLRQVHVILGSADFLGNPVGLFNNVSSGVAAIFYEPY  2885
              LEN  V+   L N IQ HY+Q+FL Q++ ILGS DFLGNPVGLFNN+SSGV   FYEPY
Sbjct  61    ELENVFVTLPQLQNRIQKHYSQQFLYQLYKILGSLDFLGNPVGLFNNISSGVKDFFYEPY  120

Query  2886  QGLVMTDRPQELGMGIAKGATSFVKKSVFGFSDSMAKFTGSMSKGLAVATLDKEFQD  2942
             QGL+    PQE G+G+AKGA S VK +VFG SDS++K TGS+ KGLA  T+DK++Q 
Sbjct  121   QGLIQG--PQEFGLGLAKGAKSLVKNTVFGVSDSVSKITGSIGKGLAALTMDKQYQQ  175


>CDD:463646 pfam12624, Chorein_N, N-terminal region of Chorein or VPS13. 
 Although mutations in the full-length vacuolar protein sorting 
13A (VPS13A) protein in vertebrates lead to the disease 
of chorea-acanthocytosis, the exact function of any of the regions 
within the protein is not yet known. This region is the 
proposed leucine zipper at the N-terminus. The full-length 
protein is a transmembrane protein with a presumed role in 
vesicle-mediated sorting and intracellular protein transport.
Length=116

 Score = 178 bits (454),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 69/116 (59%), Positives = 90/116 (78%), Gaps = 1/116 (1%)

Query  2    LEGLVANLLNRFLGYYVKNFDAKQLNIGIWSGDVKLRNLELRREALDQLHLPLNVVEGHL  61
            LE LVA+LLNR+LG YV+N D  QL +G+WSGDV L NL+L++EALD+L LP+ V  GH+
Sbjct  1    LESLVASLLNRYLGEYVENLDPDQLKVGLWSGDVVLENLKLKKEALDKLDLPIEVKSGHI  60

Query  62   GELTLSIPWSNLRGKPVKVEIEDVFLLAAPK-EDADYDPEEEERRAYNLKMEKIES  116
            G+LTL IPW+NL+ +PV +EIEDV+LLA PK E  +YD EEEE+R    K EK+ +
Sbjct  61   GKLTLKIPWTNLKSEPVVIEIEDVYLLAVPKDESEEYDEEEEEKRELAAKKEKLAA  116



Lambda      K        H        a         alpha
   0.317    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3880794076


Query= TCONS_00031108

Length=2504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465311 pfam16910, VPS13_mid_rpt, Repeating coiled region of V...  365     5e-116
CDD:461974 pfam06650, SHR-BD, SHR-binding domain of vacuolar-sort...  348     2e-109
CDD:465309 pfam16908, VPS13, Vacuolar sorting-associated protein ...  341     9e-108
CDD:463646 pfam12624, Chorein_N, N-terminal region of Chorein or ...  176     5e-52 


>CDD:465311 pfam16910, VPS13_mid_rpt, Repeating coiled region of VPS13.  
This repeat is a family of repeating regions of eukaryotic vacuolar 
sorting-associated 13 proteins. This repeating region 
shares a common core element that includes a well-conserved 
P-x4-P-x13-17-G sequence. The exact function of this repeat 
is not known.
Length=236

 Score = 365 bits (940),  Expect = 5e-116, Method: Composition-based stats.
 Identities = 131/236 (56%), Positives = 177/236 (75%), Gaps = 1/236 (0%)

Query  591  EKNPLEGDADSVVRVKMKSIEVIYNPRFLVEIVKFFEPPERHMESIGALLDSAGATVEEI  650
            E NPL+G ADS + VK++ +E+IY+P F+ E++ FF+PPE H+E IGAL+ +A AT+E I
Sbjct  2    ETNPLDGSADSRLTVKLRPLEIIYDPHFIEEVIDFFKPPESHLELIGALMAAAEATLEGI  61

Query  651  RQQTRAGLEFALEEHKKVDAHFDIHAPLIIVPESITQESSLCLILDAGHISVNSELVDRQ  710
            ++QTRAGLE+ALEEHK +D   D+ APLIIVPE  T + S CLILDAGHISV S+LVD+ 
Sbjct  62   KEQTRAGLEYALEEHKTLDLDIDLQAPLIIVPEDYTSKDSPCLILDAGHISVTSDLVDKS  121

Query  711  TMRDLQAKQKRQYVENDYKELEHLLYDRFLLKLDSTQVLIGPGVESTKSQLTSEVMNRNF  770
            T++++++KQ +QY E D KELE L+YD+F LKL  TQVLIGP  E  K  LT +  +   
Sbjct  122  TIKEIKSKQSQQYTEEDLKELESLMYDKFSLKLSDTQVLIGPSGEDWKEALTEDD-SSPL  180

Query  771  HIIDRINVDFVLELCIIPKSTELTRTRISGHLPELHASMSDTKYKGLMKLIDIAIP  826
            HI++ IN+D  LE  I+PK+  L + ++SGHLP LH + SD KYK LM+LID++IP
Sbjct  181  HILEPINLDLTLEKSILPKAPRLPKFKVSGHLPSLHINFSDDKYKSLMRLIDVSIP  236


>CDD:461974 pfam06650, SHR-BD, SHR-binding domain of vacuolar-sorting associated 
protein 13.  SHR-BD is a family of eukaryotic proteins 
found on vacuolar-sorting associated proteins towards the 
C-terminus. In plants, the domain is found to be the region 
which interacts with SHR or the SHORT-ROOT transcription factor, 
a regulator of root-growth and asymmetric cell division 
that separates ground tissue into endodermis and cortex. The 
plant protein containing the SHR-BD is named SHRUBBY or SHBY, 
UniProtKB:Q9FT44.
Length=275

 Score = 348 bits (894),  Expect = 2e-109, Method: Composition-based stats.
 Identities = 131/243 (54%), Positives = 180/243 (74%), Gaps = 6/243 (2%)

Query  2237  FKVSIYSPYLILNKTGMPMEIQSKAFLQSARSAAGEGLNPDPRHGGRALPYMYAY-QSDD  2295
              KVSIYSPY+ILNKTG+P+ ++SK     A              G R +P M+++   DD
Sbjct  1     LKVSIYSPYVILNKTGLPLIVRSKGNKNKAAGTLESH-----EGGRRLIPLMFSFDTFDD  55

Query  2296  PKNRSILKIGDSAWSKPQSFEALGSNFEVVLSDRQGKSEFHAGVSVTEGEGKYKMTKVVT  2355
              KNR++L+IGDS+WSKP SF+A+G   +VVL    G++E + G+SV+EG GKYK+TK+VT
Sbjct  56    RKNRALLRIGDSSWSKPFSFDAIGQTNDVVLPSPNGQNEVYLGISVSEGRGKYKLTKIVT  115

Query  2356  ISPRFILKNKLSEEILVREPGSSSVLTIKSGNLVPLHFLRQIAEKQLCLCFPGVNNQWSS  2415
             I+PRFI+KNKL E++ +REPGSS ++++  G L+PLH+LR + EKQLC+ FPG N+QWSS
Sbjct  116   IAPRFIIKNKLPEDLEIREPGSSKIISLPPGELIPLHWLRNVEEKQLCIRFPGSNSQWSS  175

Query  2416  PFNIADVGTVHVKLAKANQRQRLIKVDIIMEGATLFIHLSLETRNWPFSMRNESDSEFIF  2475
             PFNI+DVG+ +VK+ + N  Q+L+KV+II+E AT+FI +  E  NWPFS+RN SD EFIF
Sbjct  176   PFNISDVGSTYVKVRRQNSGQKLLKVEIILEDATIFIRIEDEDNNWPFSIRNFSDVEFIF  235

Query  2476  YQA  2478
             YQ 
Sbjct  236   YQR  238


>CDD:465309 pfam16908, VPS13, Vacuolar sorting-associated protein 13, N-terminal. 
 VPS13 is a family of eukaryotic vacuolar sorting-associated 
13 proteins that lies just downstream from Chorein_N 
family, pfam12624. The exact function of this domain is not 
known.
Length=234

 Score = 341 bits (878),  Expect = 9e-108, Method: Composition-based stats.
 Identities = 128/243 (53%), Positives = 170/243 (70%), Gaps = 14/243 (6%)

Query  139  FTQSLVTAVVDNLQISIKNVHFRYEDSIASPGHPFAVGLTLKELSAVSTDSEWNPTFIQS  198
            FT+SL+T ++DNLQ++IKN+H RYEDS+++PGHPFA G+TL+ELSA STD  W PTFIQ 
Sbjct  1    FTESLITKIIDNLQVTIKNIHIRYEDSVSNPGHPFAFGITLEELSAQSTDENWKPTFIQG  60

Query  199  TSTTTHKLATLGALSVYWNTDAELLGTGRGSDLGAEAQGISHAELIEKLRTFIESEESQ-  257
            TS   HKL  L +LSVYW+TD+E L              +   EL+EK ++ I S+ ++ 
Sbjct  61   TSKIIHKLVELESLSVYWDTDSESL---------ELLGDLDLEELLEKFKSLIASKSNKP  111

Query  258  ---QFMLRPVSGRAGLELDKSGKHD-RPAIKTRLLFDELSFVLDDDQYRDALMLVDLFHY  313
               Q++L+PVSG A L L+K G+ +  P I   L FDE+   LDD QYRD L L+D FH 
Sbjct  112  PDHQYILKPVSGSAKLTLNKKGETETIPKIDLDLEFDEIGLTLDDRQYRDILSLLDSFHR  171

Query  314  FLRHQEYKKLQPKCRPKEDPRAWFRFAGEAVLSKIHDRNRRWSWDYIKERRDDRIAYIHL  373
            FLR Q+Y+K +PK   KE+PRAW+++A  AVL +I +R R+WSWDYIK+RRDDR  YI L
Sbjct  172  FLRRQKYRKYRPKVSVKENPRAWWKYAINAVLEEIRERRRKWSWDYIKKRRDDRKEYIEL  231

Query  374  FKK  376
            +KK
Sbjct  232  YKK  234


>CDD:463646 pfam12624, Chorein_N, N-terminal region of Chorein or VPS13. 
 Although mutations in the full-length vacuolar protein sorting 
13A (VPS13A) protein in vertebrates lead to the disease 
of chorea-acanthocytosis, the exact function of any of the regions 
within the protein is not yet known. This region is the 
proposed leucine zipper at the N-terminus. The full-length 
protein is a transmembrane protein with a presumed role in 
vesicle-mediated sorting and intracellular protein transport.
Length=116

 Score = 176 bits (450),  Expect = 5e-52, Method: Composition-based stats.
 Identities = 69/116 (59%), Positives = 90/116 (78%), Gaps = 1/116 (1%)

Query  2    LEGLVANLLNRFLGYYVKNFDAKQLNIGIWSGDVKLRNLELRREALDQLHLPLNVVEGHL  61
            LE LVA+LLNR+LG YV+N D  QL +G+WSGDV L NL+L++EALD+L LP+ V  GH+
Sbjct  1    LESLVASLLNRYLGEYVENLDPDQLKVGLWSGDVVLENLKLKKEALDKLDLPIEVKSGHI  60

Query  62   GELTLSIPWSNLRGKPVKVEIEDVFLLAAPK-EDADYDPEEEERRAYNLKMEKIES  116
            G+LTL IPW+NL+ +PV +EIEDV+LLA PK E  +YD EEEE+R    K EK+ +
Sbjct  61   GKLTLKIPWTNLKSEPVVIEIEDVYLLAVPKDESEEYDEEEEEKRELAAKKEKLAA  116



Lambda      K        H        a         alpha
   0.316    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3117911296


Query= TCONS_00031110

Length=3170
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461974 pfam06650, SHR-BD, SHR-binding domain of vacuolar-sort...  409     2e-130
CDD:465311 pfam16910, VPS13_mid_rpt, Repeating coiled region of V...  367     1e-116
CDD:465309 pfam16908, VPS13, Vacuolar sorting-associated protein ...  343     4e-108
CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 pro...  305     9e-96 
CDD:463646 pfam12624, Chorein_N, N-terminal region of Chorein or ...  178     3e-52 


>CDD:461974 pfam06650, SHR-BD, SHR-binding domain of vacuolar-sorting associated 
protein 13.  SHR-BD is a family of eukaryotic proteins 
found on vacuolar-sorting associated proteins towards the 
C-terminus. In plants, the domain is found to be the region 
which interacts with SHR or the SHORT-ROOT transcription factor, 
a regulator of root-growth and asymmetric cell division 
that separates ground tissue into endodermis and cortex. The 
plant protein containing the SHR-BD is named SHRUBBY or SHBY, 
UniProtKB:Q9FT44.
Length=275

 Score = 409 bits (1052),  Expect = 2e-130, Method: Composition-based stats.
 Identities = 151/282 (54%), Positives = 208/282 (74%), Gaps = 8/282 (3%)

Query  2237  FKVSIYSPYLILNKTGMPMEIQSKAFLQSARSAAGEGLNPDPRHGGRALPYMYAY-QSDD  2295
              KVSIYSPY+ILNKTG+P+ ++SK     A              G R +P M+++   DD
Sbjct  1     LKVSIYSPYVILNKTGLPLIVRSKGNKNKAAGTLESH-----EGGRRLIPLMFSFDTFDD  55

Query  2296  PKNRSILKIGDSAWSKPQSFEALGSNFEVVLSDRQGKSEFHAGVSVTEGEGKYKMTKVVT  2355
              KNR++L+IGDS+WSKP SF+A+G   +VVL    G++E + G+SV+EG GKYK+TK+VT
Sbjct  56    RKNRALLRIGDSSWSKPFSFDAIGQTNDVVLPSPNGQNEVYLGISVSEGRGKYKLTKIVT  115

Query  2356  ISPRFILKNKLSEEILVREPGSSSVLTIKSGNLVPLHFLRQIAEKQLCLCFPGVNNQWSS  2415
             I+PRFI+KNKL E++ +REPGSS ++++  G L+PLH+LR + EKQLC+ FPG N+QWSS
Sbjct  116   IAPRFIIKNKLPEDLEIREPGSSKIISLPPGELIPLHWLRNVEEKQLCIRFPGSNSQWSS  175

Query  2416  PFNIADVGTVHVKLAKANQRQRLIKVDIIMEGATLFIHLSLETRNWPFSMRNESDSEFIF  2475
             PFNI+DVG+ +VK+ + N  Q+L+KV+II+E AT+FI +  E  NWPFS+RN SD EFIF
Sbjct  176   PFNISDVGSTYVKVRRQNSGQKLLKVEIILEDATIFIRIEDEDNNWPFSIRNFSDVEFIF  235

Query  2476  YQANPYVEDDEDDRTSGWRPIRYRLPPRSIMPYAWDYPATKN  2517
             YQ NP +  D ++    ++PI YRLPP+S+MPYAWDYP+ K 
Sbjct  236   YQRNPNLNSDGENN--EYKPIYYRLPPKSVMPYAWDYPSAKQ  275


>CDD:465311 pfam16910, VPS13_mid_rpt, Repeating coiled region of VPS13.  
This repeat is a family of repeating regions of eukaryotic vacuolar 
sorting-associated 13 proteins. This repeating region 
shares a common core element that includes a well-conserved 
P-x4-P-x13-17-G sequence. The exact function of this repeat 
is not known.
Length=236

 Score = 367 bits (945),  Expect = 1e-116, Method: Composition-based stats.
 Identities = 131/236 (56%), Positives = 177/236 (75%), Gaps = 1/236 (0%)

Query  591  EKNPLEGDADSVVRVKMKSIEVIYNPRFLVEIVKFFEPPERHMESIGALLDSAGATVEEI  650
            E NPL+G ADS + VK++ +E+IY+P F+ E++ FF+PPE H+E IGAL+ +A AT+E I
Sbjct  2    ETNPLDGSADSRLTVKLRPLEIIYDPHFIEEVIDFFKPPESHLELIGALMAAAEATLEGI  61

Query  651  RQQTRAGLEFALEEHKKVDAHFDIHAPLIIVPESITQESSLCLILDAGHISVNSELVDRQ  710
            ++QTRAGLE+ALEEHK +D   D+ APLIIVPE  T + S CLILDAGHISV S+LVD+ 
Sbjct  62   KEQTRAGLEYALEEHKTLDLDIDLQAPLIIVPEDYTSKDSPCLILDAGHISVTSDLVDKS  121

Query  711  TMRDLQAKQKRQYVENDYKELEHLLYDRFLLKLDSTQVLIGPGVESTKSQLTSEVMNRNF  770
            T++++++KQ +QY E D KELE L+YD+F LKL  TQVLIGP  E  K  LT +  +   
Sbjct  122  TIKEIKSKQSQQYTEEDLKELESLMYDKFSLKLSDTQVLIGPSGEDWKEALTEDD-SSPL  180

Query  771  HIIDRINVDFVLELCIIPKSTELTRTRISGHLPELHASMSDTKYKGLMKLIDIAIP  826
            HI++ IN+D  LE  I+PK+  L + ++SGHLP LH + SD KYK LM+LID++IP
Sbjct  181  HILEPINLDLTLEKSILPKAPRLPKFKVSGHLPSLHINFSDDKYKSLMRLIDVSIP  236


>CDD:465309 pfam16908, VPS13, Vacuolar sorting-associated protein 13, N-terminal. 
 VPS13 is a family of eukaryotic vacuolar sorting-associated 
13 proteins that lies just downstream from Chorein_N 
family, pfam12624. The exact function of this domain is not 
known.
Length=234

 Score = 343 bits (882),  Expect = 4e-108, Method: Composition-based stats.
 Identities = 128/243 (53%), Positives = 170/243 (70%), Gaps = 14/243 (6%)

Query  139  FTQSLVTAVVDNLQISIKNVHFRYEDSIASPGHPFAVGLTLKELSAVSTDSEWNPTFIQS  198
            FT+SL+T ++DNLQ++IKN+H RYEDS+++PGHPFA G+TL+ELSA STD  W PTFIQ 
Sbjct  1    FTESLITKIIDNLQVTIKNIHIRYEDSVSNPGHPFAFGITLEELSAQSTDENWKPTFIQG  60

Query  199  TSTTTHKLATLGALSVYWNTDAELLGTGRGSDLGAEAQGISHAELIEKLRTFIESEESQ-  257
            TS   HKL  L +LSVYW+TD+E L              +   EL+EK ++ I S+ ++ 
Sbjct  61   TSKIIHKLVELESLSVYWDTDSESL---------ELLGDLDLEELLEKFKSLIASKSNKP  111

Query  258  ---QFMLRPVSGRAGLELDKSGKHD-RPAIKTRLLFDELSFVLDDDQYRDALMLVDLFHY  313
               Q++L+PVSG A L L+K G+ +  P I   L FDE+   LDD QYRD L L+D FH 
Sbjct  112  PDHQYILKPVSGSAKLTLNKKGETETIPKIDLDLEFDEIGLTLDDRQYRDILSLLDSFHR  171

Query  314  FLRHQEYKKLQPKCRPKEDPRAWFRFAGEAVLSKIHDRNRRWSWDYIKERRDDRIAYIHL  373
            FLR Q+Y+K +PK   KE+PRAW+++A  AVL +I +R R+WSWDYIK+RRDDR  YI L
Sbjct  172  FLRRQKYRKYRPKVSVKENPRAWWKYAINAVLEEIRERRRKWSWDYIKKRRDDRKEYIEL  231

Query  374  FKK  376
            +KK
Sbjct  232  YKK  234


>CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 protein C-terminal. 
 VPS13_C is a family of eukaryotic vacuolar sorting-associated 
13 proteins that lies at the C-terminus of the 
members, The exact function of this domain is not known.
Length=175

 Score = 305 bits (783),  Expect = 9e-96, Method: Composition-based stats.
 Identities = 107/177 (60%), Positives = 138/177 (78%), Gaps = 2/177 (1%)

Query  2766  DVYFELLHLQPMQLDISFMRTERVNAENNMQPSNPLMFFVNVISMSMGNINDAPVRLNAL  2825
              +YFELLHLQP++L +SF R+ERVN E +++ SNPL F +N + M++GNI+DAP++LNAL
Sbjct  1     KIYFELLHLQPIKLHLSFSRSERVNLEESLEKSNPLSFLLNSLGMTLGNIDDAPIKLNAL  60

Query  2826  MLENARVSFGILLNNIQSHYTQEFLRQVHVILGSADFLGNPVGLFNNVSSGVAAIFYEPY  2885
              LEN  V+   L N IQ HY+Q+FL Q++ ILGS DFLGNPVGLFNN+SSGV   FYEPY
Sbjct  61    ELENVFVTLPQLQNRIQKHYSQQFLYQLYKILGSLDFLGNPVGLFNNISSGVKDFFYEPY  120

Query  2886  QGLVMTDRPQELGMGIAKGATSFVKKSVFGFSDSMAKFTGSMSKGLAVATLDKEFQD  2942
             QGL+    PQE G+G+AKGA S VK +VFG SDS++K TGS+ KGLA  T+DK++Q 
Sbjct  121   QGLIQG--PQEFGLGLAKGAKSLVKNTVFGVSDSVSKITGSIGKGLAALTMDKQYQQ  175


>CDD:463646 pfam12624, Chorein_N, N-terminal region of Chorein or VPS13. 
 Although mutations in the full-length vacuolar protein sorting 
13A (VPS13A) protein in vertebrates lead to the disease 
of chorea-acanthocytosis, the exact function of any of the regions 
within the protein is not yet known. This region is the 
proposed leucine zipper at the N-terminus. The full-length 
protein is a transmembrane protein with a presumed role in 
vesicle-mediated sorting and intracellular protein transport.
Length=116

 Score = 178 bits (453),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 69/116 (59%), Positives = 90/116 (78%), Gaps = 1/116 (1%)

Query  2    LEGLVANLLNRFLGYYVKNFDAKQLNIGIWSGDVKLRNLELRREALDQLHLPLNVVEGHL  61
            LE LVA+LLNR+LG YV+N D  QL +G+WSGDV L NL+L++EALD+L LP+ V  GH+
Sbjct  1    LESLVASLLNRYLGEYVENLDPDQLKVGLWSGDVVLENLKLKKEALDKLDLPIEVKSGHI  60

Query  62   GELTLSIPWSNLRGKPVKVEIEDVFLLAAPK-EDADYDPEEEERRAYNLKMEKIES  116
            G+LTL IPW+NL+ +PV +EIEDV+LLA PK E  +YD EEEE+R    K EK+ +
Sbjct  61   GKLTLKIPWTNLKSEPVVIEIEDVYLLAVPKDESEEYDEEEEEKRELAAKKEKLAA  116



Lambda      K        H        a         alpha
   0.317    0.134    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0732    0.140     1.90     42.6     43.6 

Effective search space used: 3859394952


Query= TCONS_00035381

Length=3187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461974 pfam06650, SHR-BD, SHR-binding domain of vacuolar-sort...  409     2e-130
CDD:465311 pfam16910, VPS13_mid_rpt, Repeating coiled region of V...  367     1e-116
CDD:465309 pfam16908, VPS13, Vacuolar sorting-associated protein ...  343     3e-108
CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 pro...  305     6e-96 
CDD:463646 pfam12624, Chorein_N, N-terminal region of Chorein or ...  178     2e-52 


>CDD:461974 pfam06650, SHR-BD, SHR-binding domain of vacuolar-sorting associated 
protein 13.  SHR-BD is a family of eukaryotic proteins 
found on vacuolar-sorting associated proteins towards the 
C-terminus. In plants, the domain is found to be the region 
which interacts with SHR or the SHORT-ROOT transcription factor, 
a regulator of root-growth and asymmetric cell division 
that separates ground tissue into endodermis and cortex. The 
plant protein containing the SHR-BD is named SHRUBBY or SHBY, 
UniProtKB:Q9FT44.
Length=275

 Score = 409 bits (1053),  Expect = 2e-130, Method: Composition-based stats.
 Identities = 151/282 (54%), Positives = 208/282 (74%), Gaps = 8/282 (3%)

Query  2237  FKVSIYSPYLILNKTGMPMEIQSKAFLQSARSAAGEGLNPDPRHGGRALPYMYAY-QSDD  2295
              KVSIYSPY+ILNKTG+P+ ++SK     A              G R +P M+++   DD
Sbjct  1     LKVSIYSPYVILNKTGLPLIVRSKGNKNKAAGTLESH-----EGGRRLIPLMFSFDTFDD  55

Query  2296  PKNRSILKIGDSAWSKPQSFEALGSNFEVVLSDRQGKSEFHAGVSVTEGEGKYKMTKVVT  2355
              KNR++L+IGDS+WSKP SF+A+G   +VVL    G++E + G+SV+EG GKYK+TK+VT
Sbjct  56    RKNRALLRIGDSSWSKPFSFDAIGQTNDVVLPSPNGQNEVYLGISVSEGRGKYKLTKIVT  115

Query  2356  ISPRFILKNKLSEEILVREPGSSSVLTIKSGNLVPLHFLRQIAEKQLCLCFPGVNNQWSS  2415
             I+PRFI+KNKL E++ +REPGSS ++++  G L+PLH+LR + EKQLC+ FPG N+QWSS
Sbjct  116   IAPRFIIKNKLPEDLEIREPGSSKIISLPPGELIPLHWLRNVEEKQLCIRFPGSNSQWSS  175

Query  2416  PFNIADVGTVHVKLAKANQRQRLIKVDIIMEGATLFIHLSLETRNWPFSMRNESDSEFIF  2475
             PFNI+DVG+ +VK+ + N  Q+L+KV+II+E AT+FI +  E  NWPFS+RN SD EFIF
Sbjct  176   PFNISDVGSTYVKVRRQNSGQKLLKVEIILEDATIFIRIEDEDNNWPFSIRNFSDVEFIF  235

Query  2476  YQANPYVEDDEDDRTSGWRPIRYRLPPRSIMPYAWDYPATKN  2517
             YQ NP +  D ++    ++PI YRLPP+S+MPYAWDYP+ K 
Sbjct  236   YQRNPNLNSDGENN--EYKPIYYRLPPKSVMPYAWDYPSAKQ  275


>CDD:465311 pfam16910, VPS13_mid_rpt, Repeating coiled region of VPS13.  
This repeat is a family of repeating regions of eukaryotic vacuolar 
sorting-associated 13 proteins. This repeating region 
shares a common core element that includes a well-conserved 
P-x4-P-x13-17-G sequence. The exact function of this repeat 
is not known.
Length=236

 Score = 367 bits (945),  Expect = 1e-116, Method: Composition-based stats.
 Identities = 131/236 (56%), Positives = 177/236 (75%), Gaps = 1/236 (0%)

Query  591  EKNPLEGDADSVVRVKMKSIEVIYNPRFLVEIVKFFEPPERHMESIGALLDSAGATVEEI  650
            E NPL+G ADS + VK++ +E+IY+P F+ E++ FF+PPE H+E IGAL+ +A AT+E I
Sbjct  2    ETNPLDGSADSRLTVKLRPLEIIYDPHFIEEVIDFFKPPESHLELIGALMAAAEATLEGI  61

Query  651  RQQTRAGLEFALEEHKKVDAHFDIHAPLIIVPESITQESSLCLILDAGHISVNSELVDRQ  710
            ++QTRAGLE+ALEEHK +D   D+ APLIIVPE  T + S CLILDAGHISV S+LVD+ 
Sbjct  62   KEQTRAGLEYALEEHKTLDLDIDLQAPLIIVPEDYTSKDSPCLILDAGHISVTSDLVDKS  121

Query  711  TMRDLQAKQKRQYVENDYKELEHLLYDRFLLKLDSTQVLIGPGVESTKSQLTSEVMNRNF  770
            T++++++KQ +QY E D KELE L+YD+F LKL  TQVLIGP  E  K  LT +  +   
Sbjct  122  TIKEIKSKQSQQYTEEDLKELESLMYDKFSLKLSDTQVLIGPSGEDWKEALTEDD-SSPL  180

Query  771  HIIDRINVDFVLELCIIPKSTELTRTRISGHLPELHASMSDTKYKGLMKLIDIAIP  826
            HI++ IN+D  LE  I+PK+  L + ++SGHLP LH + SD KYK LM+LID++IP
Sbjct  181  HILEPINLDLTLEKSILPKAPRLPKFKVSGHLPSLHINFSDDKYKSLMRLIDVSIP  236


>CDD:465309 pfam16908, VPS13, Vacuolar sorting-associated protein 13, N-terminal. 
 VPS13 is a family of eukaryotic vacuolar sorting-associated 
13 proteins that lies just downstream from Chorein_N 
family, pfam12624. The exact function of this domain is not 
known.
Length=234

 Score = 343 bits (882),  Expect = 3e-108, Method: Composition-based stats.
 Identities = 128/243 (53%), Positives = 170/243 (70%), Gaps = 14/243 (6%)

Query  139  FTQSLVTAVVDNLQISIKNVHFRYEDSIASPGHPFAVGLTLKELSAVSTDSEWNPTFIQS  198
            FT+SL+T ++DNLQ++IKN+H RYEDS+++PGHPFA G+TL+ELSA STD  W PTFIQ 
Sbjct  1    FTESLITKIIDNLQVTIKNIHIRYEDSVSNPGHPFAFGITLEELSAQSTDENWKPTFIQG  60

Query  199  TSTTTHKLATLGALSVYWNTDAELLGTGRGSDLGAEAQGISHAELIEKLRTFIESEESQ-  257
            TS   HKL  L +LSVYW+TD+E L              +   EL+EK ++ I S+ ++ 
Sbjct  61   TSKIIHKLVELESLSVYWDTDSESL---------ELLGDLDLEELLEKFKSLIASKSNKP  111

Query  258  ---QFMLRPVSGRAGLELDKSGKHD-RPAIKTRLLFDELSFVLDDDQYRDALMLVDLFHY  313
               Q++L+PVSG A L L+K G+ +  P I   L FDE+   LDD QYRD L L+D FH 
Sbjct  112  PDHQYILKPVSGSAKLTLNKKGETETIPKIDLDLEFDEIGLTLDDRQYRDILSLLDSFHR  171

Query  314  FLRHQEYKKLQPKCRPKEDPRAWFRFAGEAVLSKIHDRNRRWSWDYIKERRDDRIAYIHL  373
            FLR Q+Y+K +PK   KE+PRAW+++A  AVL +I +R R+WSWDYIK+RRDDR  YI L
Sbjct  172  FLRRQKYRKYRPKVSVKENPRAWWKYAINAVLEEIRERRRKWSWDYIKKRRDDRKEYIEL  231

Query  374  FKK  376
            +KK
Sbjct  232  YKK  234


>CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 protein C-terminal. 
 VPS13_C is a family of eukaryotic vacuolar sorting-associated 
13 proteins that lies at the C-terminus of the 
members, The exact function of this domain is not known.
Length=175

 Score = 305 bits (784),  Expect = 6e-96, Method: Composition-based stats.
 Identities = 107/177 (60%), Positives = 138/177 (78%), Gaps = 2/177 (1%)

Query  2766  DVYFELLHLQPMQLDISFMRTERVNAENNMQPSNPLMFFVNVISMSMGNINDAPVRLNAL  2825
              +YFELLHLQP++L +SF R+ERVN E +++ SNPL F +N + M++GNI+DAP++LNAL
Sbjct  1     KIYFELLHLQPIKLHLSFSRSERVNLEESLEKSNPLSFLLNSLGMTLGNIDDAPIKLNAL  60

Query  2826  MLENARVSFGILLNNIQSHYTQEFLRQVHVILGSADFLGNPVGLFNNVSSGVAAIFYEPY  2885
              LEN  V+   L N IQ HY+Q+FL Q++ ILGS DFLGNPVGLFNN+SSGV   FYEPY
Sbjct  61    ELENVFVTLPQLQNRIQKHYSQQFLYQLYKILGSLDFLGNPVGLFNNISSGVKDFFYEPY  120

Query  2886  QGLVMTDRPQELGMGIAKGATSFVKKSVFGFSDSMAKFTGSMSKGLAVATLDKEFQD  2942
             QGL+    PQE G+G+AKGA S VK +VFG SDS++K TGS+ KGLA  T+DK++Q 
Sbjct  121   QGLIQG--PQEFGLGLAKGAKSLVKNTVFGVSDSVSKITGSIGKGLAALTMDKQYQQ  175


>CDD:463646 pfam12624, Chorein_N, N-terminal region of Chorein or VPS13. 
 Although mutations in the full-length vacuolar protein sorting 
13A (VPS13A) protein in vertebrates lead to the disease 
of chorea-acanthocytosis, the exact function of any of the regions 
within the protein is not yet known. This region is the 
proposed leucine zipper at the N-terminus. The full-length 
protein is a transmembrane protein with a presumed role in 
vesicle-mediated sorting and intracellular protein transport.
Length=116

 Score = 178 bits (454),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 69/116 (59%), Positives = 90/116 (78%), Gaps = 1/116 (1%)

Query  2    LEGLVANLLNRFLGYYVKNFDAKQLNIGIWSGDVKLRNLELRREALDQLHLPLNVVEGHL  61
            LE LVA+LLNR+LG YV+N D  QL +G+WSGDV L NL+L++EALD+L LP+ V  GH+
Sbjct  1    LESLVASLLNRYLGEYVENLDPDQLKVGLWSGDVVLENLKLKKEALDKLDLPIEVKSGHI  60

Query  62   GELTLSIPWSNLRGKPVKVEIEDVFLLAAPK-EDADYDPEEEERRAYNLKMEKIES  116
            G+LTL IPW+NL+ +PV +EIEDV+LLA PK E  +YD EEEE+R    K EK+ +
Sbjct  61   GKLTLKIPWTNLKSEPVVIEIEDVYLLAVPKDESEEYDEEEEEKRELAAKKEKLAA  116



Lambda      K        H        a         alpha
   0.317    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3880794076


Query= TCONS_00031111

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 pro...  95.7    1e-24


>CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 protein C-terminal. 
 VPS13_C is a family of eukaryotic vacuolar sorting-associated 
13 proteins that lies at the C-terminus of the 
members, The exact function of this domain is not known.
Length=175

 Score = 95.7 bits (239),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 39/49 (80%), Gaps = 0/49 (0%)

Query  5    PQELGMGIAKGATSFVKKSVFGFSDSMAKFTGSMSKGLAVATLDKEFQD  53
            PQE G+G+AKGA S VK +VFG SDS++K TGS+ KGLA  T+DK++Q 
Sbjct  127  PQEFGLGLAKGAKSLVKNTVFGVSDSVSKITGSIGKGLAALTMDKQYQQ  175



Lambda      K        H        a         alpha
   0.319    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00035382

Length=289
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 pro...  86.4    4e-21


>CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 protein C-terminal. 
 VPS13_C is a family of eukaryotic vacuolar sorting-associated 
13 proteins that lies at the C-terminus of the 
members, The exact function of this domain is not known.
Length=175

 Score = 86.4 bits (215),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 35/44 (80%), Gaps = 0/44 (0%)

Query  1    MGIAKGATSFVKKSVFGFSDSMAKFTGSMSKGLAVATLDKEFQD  44
            +G+AKGA S VK +VFG SDS++K TGS+ KGLA  T+DK++Q 
Sbjct  132  LGLAKGAKSLVKNTVFGVSDSVSKITGSIGKGLAALTMDKQYQQ  175



Lambda      K        H        a         alpha
   0.319    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 327287968


Query= TCONS_00031112

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 pro...  86.1    3e-21


>CDD:465310 pfam16909, VPS13_C, Vacuolar-sorting-associated 13 protein C-terminal. 
 VPS13_C is a family of eukaryotic vacuolar sorting-associated 
13 proteins that lies at the C-terminus of the 
members, The exact function of this domain is not known.
Length=175

 Score = 86.1 bits (214),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 35/44 (80%), Gaps = 0/44 (0%)

Query  1    MGIAKGATSFVKKSVFGFSDSMAKFTGSMSKGLAVATLDKEFQD  44
            +G+AKGA S VK +VFG SDS++K TGS+ KGLA  T+DK++Q 
Sbjct  132  LGLAKGAKSLVKNTVFGVSDSVSKITGSIGKGLAALTMDKQYQQ  175



Lambda      K        H        a         alpha
   0.320    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00035383

Length=749
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400273 pfam07842, GCFC, GC-rich sequence DNA-binding factor-l...  287     5e-92
CDD:396249 pfam01585, G-patch, G-patch domain. This domain is fou...  74.5    2e-17


>CDD:400273 pfam07842, GCFC, GC-rich sequence DNA-binding factor-like protein. 
 Sequences found in this family are similar to a region 
of a human GC-rich sequence DNA-binding factor homolog. This 
is thought to be a protein involved in transcriptional regulation 
due to partial homologies to a transcription repressor 
and histone-interacting protein. This family also contains 
tuftelin interacting protein 11 which has been identified 
as both a nuclear and cytoplasmic protein, and has been implicated 
in the secretory pathway. Sip1, a septin interacting 
protein is also a member of this family.
Length=275

 Score = 287 bits (735),  Expect = 5e-92, Method: Composition-based stats.
 Identities = 103/286 (36%), Positives = 162/286 (57%), Gaps = 13/286 (5%)

Query  293  FDELTSKLESIEMKYRSEIDEYRLSETAVAAIHPLFRQAMEDWDPLQEPTFLVSNLRRLQ  352
             DE+    E ++ KY  E  E  LS  A + +HPL R  + +WDPL++PT+ V  L R +
Sbjct  1    LDEIADIFERLQRKYPEEYKEAELSLLAPSLVHPLLRLELLEWDPLKDPTYGVDILSRWR  60

Query  353  PLLS-RKKNDEAVSRQATSPYETMIYTLWLPRVRSALINDWDVYDPSPATSLIVSWKEIL  411
             LL     +D+   R++  PYETM++  WLP  RS++I+ WD  DP P  +L+ +W  +L
Sbjct  61   KLLEPDVSSDDTGGRESMDPYETMLWEGWLPSYRSSIISTWDPRDPDPMLALLEAWAPLL  120

Query  412  PNFVFANVLDQLVVPKLSSGLKEWKPRSSSRRHPSSHQGSRSPWWLFTWLQYLDERHTNP  471
            P+++  N+L+QL++PKL++ ++EW P S +         S    W+  WL  L  R    
Sbjct  121  PSWILDNILEQLILPKLTAAVEEWDPLSDTVTRNLVPIHS----WIHPWLPLLGARLEP-  175

Query  472  RQPTGLLSDAKKKFREILKSWDLRKGLISGIELWRDALGS-EFDVTLRNSLLPRLASHLR  530
                 L  D ++K R+ L +W   +  ++G++ W+D     E+D  LR  +LP+LA  L+
Sbjct  176  -----LYPDIRRKLRQALDAWHPSRSALAGLKPWKDVFSPGEWDKFLRRHILPKLALALQ  230

Query  531  DDFEVNPQDQDLTALEDILKWKGFFRPNVLGLLLVAEFFPKWHKIL  576
             +F +NP+ Q L    ++LKWK    P+VL  LL  EFFPKW ++L
Sbjct  231  -EFVINPRQQSLELFRNVLKWKDLLPPSVLADLLEKEFFPKWLQVL  275


>CDD:396249 pfam01585, G-patch, G-patch domain.  This domain is found in 
a number of RNA binding proteins, and is also found in proteins 
that contain RNA binding domains. This suggests that this 
domain may have an RNA binding function. This domain has seven 
highly conserved glycines.
Length=45

 Score = 74.5 bits (184),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 21/45 (47%), Positives = 30/45 (67%), Gaps = 0/45 (0%)

Query  66   GNSFAARMMAKMGYKEGQGLGASGQGIVAPIEAQARPTGAGLGAV  110
             ++   +++ KMG+KEGQGLG + QGI  PIEA+ +    GLGA 
Sbjct  1    TSNIGFKLLQKMGWKEGQGLGKNEQGIAEPIEAKIKKDRRGLGAE  45



Lambda      K        H        a         alpha
   0.315    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 953124560


Query= TCONS_00031113

Length=767
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400273 pfam07842, GCFC, GC-rich sequence DNA-binding factor-l...  288     3e-92
CDD:396249 pfam01585, G-patch, G-patch domain. This domain is fou...  74.5    2e-17


>CDD:400273 pfam07842, GCFC, GC-rich sequence DNA-binding factor-like protein. 
 Sequences found in this family are similar to a region 
of a human GC-rich sequence DNA-binding factor homolog. This 
is thought to be a protein involved in transcriptional regulation 
due to partial homologies to a transcription repressor 
and histone-interacting protein. This family also contains 
tuftelin interacting protein 11 which has been identified 
as both a nuclear and cytoplasmic protein, and has been implicated 
in the secretory pathway. Sip1, a septin interacting 
protein is also a member of this family.
Length=275

 Score = 288 bits (738),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 103/286 (36%), Positives = 162/286 (57%), Gaps = 13/286 (5%)

Query  311  FDELTSKLESIEMKYRSEIDEYRLSETAVAAIHPLFRQAMEDWDPLQEPTFLVSNLRRLQ  370
             DE+    E ++ KY  E  E  LS  A + +HPL R  + +WDPL++PT+ V  L R +
Sbjct  1    LDEIADIFERLQRKYPEEYKEAELSLLAPSLVHPLLRLELLEWDPLKDPTYGVDILSRWR  60

Query  371  PLLS-RKKNDEAVSRQATSPYETMIYTLWLPRVRSALINDWDVYDPSPATSLIVSWKEIL  429
             LL     +D+   R++  PYETM++  WLP  RS++I+ WD  DP P  +L+ +W  +L
Sbjct  61   KLLEPDVSSDDTGGRESMDPYETMLWEGWLPSYRSSIISTWDPRDPDPMLALLEAWAPLL  120

Query  430  PNFVFANVLDQLVVPKLSSGLKEWKPRSSSRRHPSSHQGSRSPWWLFTWLQYLDERHTNP  489
            P+++  N+L+QL++PKL++ ++EW P S +         S    W+  WL  L  R    
Sbjct  121  PSWILDNILEQLILPKLTAAVEEWDPLSDTVTRNLVPIHS----WIHPWLPLLGARLEP-  175

Query  490  RQPTGLLSDAKKKFREILKSWDLRKGLISGIELWRDALGS-EFDVTLRNSLLPRLASHLR  548
                 L  D ++K R+ L +W   +  ++G++ W+D     E+D  LR  +LP+LA  L+
Sbjct  176  -----LYPDIRRKLRQALDAWHPSRSALAGLKPWKDVFSPGEWDKFLRRHILPKLALALQ  230

Query  549  DDFEVNPQDQDLTALEDILKWKGFFRPNVLGLLLVAEFFPKWHKIL  594
             +F +NP+ Q L    ++LKWK    P+VL  LL  EFFPKW ++L
Sbjct  231  -EFVINPRQQSLELFRNVLKWKDLLPPSVLADLLEKEFFPKWLQVL  275


>CDD:396249 pfam01585, G-patch, G-patch domain.  This domain is found in 
a number of RNA binding proteins, and is also found in proteins 
that contain RNA binding domains. This suggests that this 
domain may have an RNA binding function. This domain has seven 
highly conserved glycines.
Length=45

 Score = 74.5 bits (184),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 21/45 (47%), Positives = 30/45 (67%), Gaps = 0/45 (0%)

Query  84   GNSFAARMMAKMGYKEGQGLGASGQGIVAPIEAQARPTGAGLGAV  128
             ++   +++ KMG+KEGQGLG + QGI  PIEA+ +    GLGA 
Sbjct  1    TSNIGFKLLQKMGWKEGQGLGKNEQGIAEPIEAKIKKDRRGLGAE  45



Lambda      K        H        a         alpha
   0.315    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 979317296


Query= TCONS_00031114

Length=767
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400273 pfam07842, GCFC, GC-rich sequence DNA-binding factor-l...  288     3e-92
CDD:396249 pfam01585, G-patch, G-patch domain. This domain is fou...  74.5    2e-17


>CDD:400273 pfam07842, GCFC, GC-rich sequence DNA-binding factor-like protein. 
 Sequences found in this family are similar to a region 
of a human GC-rich sequence DNA-binding factor homolog. This 
is thought to be a protein involved in transcriptional regulation 
due to partial homologies to a transcription repressor 
and histone-interacting protein. This family also contains 
tuftelin interacting protein 11 which has been identified 
as both a nuclear and cytoplasmic protein, and has been implicated 
in the secretory pathway. Sip1, a septin interacting 
protein is also a member of this family.
Length=275

 Score = 288 bits (738),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 103/286 (36%), Positives = 162/286 (57%), Gaps = 13/286 (5%)

Query  311  FDELTSKLESIEMKYRSEIDEYRLSETAVAAIHPLFRQAMEDWDPLQEPTFLVSNLRRLQ  370
             DE+    E ++ KY  E  E  LS  A + +HPL R  + +WDPL++PT+ V  L R +
Sbjct  1    LDEIADIFERLQRKYPEEYKEAELSLLAPSLVHPLLRLELLEWDPLKDPTYGVDILSRWR  60

Query  371  PLLS-RKKNDEAVSRQATSPYETMIYTLWLPRVRSALINDWDVYDPSPATSLIVSWKEIL  429
             LL     +D+   R++  PYETM++  WLP  RS++I+ WD  DP P  +L+ +W  +L
Sbjct  61   KLLEPDVSSDDTGGRESMDPYETMLWEGWLPSYRSSIISTWDPRDPDPMLALLEAWAPLL  120

Query  430  PNFVFANVLDQLVVPKLSSGLKEWKPRSSSRRHPSSHQGSRSPWWLFTWLQYLDERHTNP  489
            P+++  N+L+QL++PKL++ ++EW P S +         S    W+  WL  L  R    
Sbjct  121  PSWILDNILEQLILPKLTAAVEEWDPLSDTVTRNLVPIHS----WIHPWLPLLGARLEP-  175

Query  490  RQPTGLLSDAKKKFREILKSWDLRKGLISGIELWRDALGS-EFDVTLRNSLLPRLASHLR  548
                 L  D ++K R+ L +W   +  ++G++ W+D     E+D  LR  +LP+LA  L+
Sbjct  176  -----LYPDIRRKLRQALDAWHPSRSALAGLKPWKDVFSPGEWDKFLRRHILPKLALALQ  230

Query  549  DDFEVNPQDQDLTALEDILKWKGFFRPNVLGLLLVAEFFPKWHKIL  594
             +F +NP+ Q L    ++LKWK    P+VL  LL  EFFPKW ++L
Sbjct  231  -EFVINPRQQSLELFRNVLKWKDLLPPSVLADLLEKEFFPKWLQVL  275


>CDD:396249 pfam01585, G-patch, G-patch domain.  This domain is found in 
a number of RNA binding proteins, and is also found in proteins 
that contain RNA binding domains. This suggests that this 
domain may have an RNA binding function. This domain has seven 
highly conserved glycines.
Length=45

 Score = 74.5 bits (184),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 21/45 (47%), Positives = 30/45 (67%), Gaps = 0/45 (0%)

Query  84   GNSFAARMMAKMGYKEGQGLGASGQGIVAPIEAQARPTGAGLGAV  128
             ++   +++ KMG+KEGQGLG + QGI  PIEA+ +    GLGA 
Sbjct  1    TSNIGFKLLQKMGWKEGQGLGKNEQGIAEPIEAKIKKDRRGLGAE  45



Lambda      K        H        a         alpha
   0.315    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 979317296


Query= TCONS_00031115

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismuta...  115     2e-34
CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismuta...  109     5e-32


>CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismutases, C-terminal 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and molecular 
oxygen. Three evolutionarily distinct families of SODs 
are known, of which the Mn/Fe-binding family is one. In 
humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. C-terminal domain is a mixed alpha/beta fold.
Length=102

 Score = 115 bits (292),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 40/76 (53%), Positives = 52/76 (68%), Gaps = 2/76 (3%)

Query  125  PSGALAKAIDETYGSLENFQGKMNTALAGIQGSGWAWLVRDKQTGHIGIKTYANQD-PVV  183
            P+GALA+AI++ +GS + F+ + N A AG+ GSGWAWLV D   G + I T  NQD P+ 
Sbjct  1    PTGALAEAIEKDFGSFDAFKEEFNAAAAGVFGSGWAWLVYDPD-GKLEIVTTPNQDNPLT  59

Query  184  GQFQPLLGIDAWEHAY  199
                PLLG+D WEHAY
Sbjct  60   DGLTPLLGLDVWEHAY  75


>CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismutases, alpha-hairpin 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and 
molecular oxygen. Three evolutionarily distinct families of 
SODs are known, of which the Mn/Fe-binding family is one. 
In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. N-terminal domain is a long alpha antiparallel 
hairpin. A small fragment of YTRE_LEPBI matches well - sequencing 
error?.
Length=82

 Score = 109 bits (274),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 42/80 (53%), Positives = 54/80 (68%), Gaps = 0/80 (0%)

Query  36   TLPDLSYDYGALEPSISGKIMELHHKNHHQTYVNSYNQAIEQLQEAQAKNDIASQIALKP  95
             LPDL Y Y ALEP IS + ME+HH  HHQTYVN+ N A+E L+EA+   +     AL  
Sbjct  3    ELPDLPYAYDALEPHISKETMEIHHTKHHQTYVNNLNAALEGLEEARKPLEELIIKALLG  62

Query  96   LINFHGGGHLNHTLFWENLA  115
             +  +GGGH NH+LFW+NL+
Sbjct  63   GLFNNGGGHWNHSLFWKNLS  82



Lambda      K        H        a         alpha
   0.314    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00035384

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismuta...  110     1e-32
CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismuta...  78.2    7e-20


>CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismutases, alpha-hairpin 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and 
molecular oxygen. Three evolutionarily distinct families of 
SODs are known, of which the Mn/Fe-binding family is one. 
In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. N-terminal domain is a long alpha antiparallel 
hairpin. A small fragment of YTRE_LEPBI matches well - sequencing 
error?.
Length=82

 Score = 110 bits (277),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 42/80 (53%), Positives = 54/80 (68%), Gaps = 0/80 (0%)

Query  36   TLPDLSYDYGALEPSISGKIMELHHKNHHQTYVNSYNQAIEQLQEAQAKNDIASQIALKP  95
             LPDL Y Y ALEP IS + ME+HH  HHQTYVN+ N A+E L+EA+   +     AL  
Sbjct  3    ELPDLPYAYDALEPHISKETMEIHHTKHHQTYVNNLNAALEGLEEARKPLEELIIKALLG  62

Query  96   LINFHGGGHLNHTLFWENLA  115
             +  +GGGH NH+LFW+NL+
Sbjct  63   GLFNNGGGHWNHSLFWKNLS  82


>CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismutases, C-terminal 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and molecular 
oxygen. Three evolutionarily distinct families of SODs 
are known, of which the Mn/Fe-binding family is one. In 
humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. C-terminal domain is a mixed alpha/beta fold.
Length=102

 Score = 78.2 bits (194),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 32/44 (73%), Gaps = 0/44 (0%)

Query  125  PSGALAKAIDETYGSLENFQGKMNTALAGIQGSGWAWLVRDKQT  168
            P+GALA+AI++ +GS + F+ + N A AG+ GSGWAWLV D   
Sbjct  1    PTGALAEAIEKDFGSFDAFKEEFNAAAAGVFGSGWAWLVYDPDG  44



Lambda      K        H        a         alpha
   0.313    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00035386

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismuta...  122     1e-36
CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismuta...  112     1e-32


>CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismutases, C-terminal 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and molecular 
oxygen. Three evolutionarily distinct families of SODs 
are known, of which the Mn/Fe-binding family is one. In 
humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. C-terminal domain is a mixed alpha/beta fold.
Length=102

 Score = 122 bits (310),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 42/85 (49%), Positives = 56/85 (66%), Gaps = 2/85 (2%)

Query  125  PSGALAKAIDETYGSLENFQGKMNTALAGIQGSGWAWLVRDKQTGHIGIKTYANQD-PVV  183
            P+GALA+AI++ +GS + F+ + N A AG+ GSGWAWLV D   G + I T  NQD P+ 
Sbjct  1    PTGALAEAIEKDFGSFDAFKEEFNAAAAGVFGSGWAWLVYDPD-GKLEIVTTPNQDNPLT  59

Query  184  GQFQPLLGIDAWEHAYYCNTRTARP  208
                PLLG+D WEHAYY + +  R 
Sbjct  60   DGLTPLLGLDVWEHAYYLDYQNRRA  84


>CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismutases, alpha-hairpin 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and 
molecular oxygen. Three evolutionarily distinct families of 
SODs are known, of which the Mn/Fe-binding family is one. 
In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. N-terminal domain is a long alpha antiparallel 
hairpin. A small fragment of YTRE_LEPBI matches well - sequencing 
error?.
Length=82

 Score = 112 bits (281),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 42/80 (53%), Positives = 54/80 (68%), Gaps = 0/80 (0%)

Query  36   TLPDLSYDYGALEPSISGKIMELHHKNHHQTYVNSYNQAIEQLQEAQAKNDIASQIALKP  95
             LPDL Y Y ALEP IS + ME+HH  HHQTYVN+ N A+E L+EA+   +     AL  
Sbjct  3    ELPDLPYAYDALEPHISKETMEIHHTKHHQTYVNNLNAALEGLEEARKPLEELIIKALLG  62

Query  96   LINFHGGGHLNHTLFWENLA  115
             +  +GGGH NH+LFW+NL+
Sbjct  63   GLFNNGGGHWNHSLFWKNLS  82



Lambda      K        H        a         alpha
   0.314    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00035385

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismuta...  115     2e-34
CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismuta...  109     5e-32


>CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismutases, C-terminal 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and molecular 
oxygen. Three evolutionarily distinct families of SODs 
are known, of which the Mn/Fe-binding family is one. In 
humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. C-terminal domain is a mixed alpha/beta fold.
Length=102

 Score = 115 bits (292),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 40/76 (53%), Positives = 52/76 (68%), Gaps = 2/76 (3%)

Query  125  PSGALAKAIDETYGSLENFQGKMNTALAGIQGSGWAWLVRDKQTGHIGIKTYANQD-PVV  183
            P+GALA+AI++ +GS + F+ + N A AG+ GSGWAWLV D   G + I T  NQD P+ 
Sbjct  1    PTGALAEAIEKDFGSFDAFKEEFNAAAAGVFGSGWAWLVYDPD-GKLEIVTTPNQDNPLT  59

Query  184  GQFQPLLGIDAWEHAY  199
                PLLG+D WEHAY
Sbjct  60   DGLTPLLGLDVWEHAY  75


>CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismutases, alpha-hairpin 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and 
molecular oxygen. Three evolutionarily distinct families of 
SODs are known, of which the Mn/Fe-binding family is one. 
In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. N-terminal domain is a long alpha antiparallel 
hairpin. A small fragment of YTRE_LEPBI matches well - sequencing 
error?.
Length=82

 Score = 109 bits (274),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 42/80 (53%), Positives = 54/80 (68%), Gaps = 0/80 (0%)

Query  36   TLPDLSYDYGALEPSISGKIMELHHKNHHQTYVNSYNQAIEQLQEAQAKNDIASQIALKP  95
             LPDL Y Y ALEP IS + ME+HH  HHQTYVN+ N A+E L+EA+   +     AL  
Sbjct  3    ELPDLPYAYDALEPHISKETMEIHHTKHHQTYVNNLNAALEGLEEARKPLEELIIKALLG  62

Query  96   LINFHGGGHLNHTLFWENLA  115
             +  +GGGH NH+LFW+NL+
Sbjct  63   GLFNNGGGHWNHSLFWKNLS  82



Lambda      K        H        a         alpha
   0.314    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0722    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00035387

Length=229
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismuta...  171     9e-56
CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismuta...  109     7e-32


>CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismutases, C-terminal 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and molecular 
oxygen. Three evolutionarily distinct families of SODs 
are known, of which the Mn/Fe-binding family is one. In 
humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. C-terminal domain is a mixed alpha/beta fold.
Length=102

 Score = 171 bits (436),  Expect = 9e-56, Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 73/103 (71%), Gaps = 2/103 (2%)

Query  125  PSGALAKAIDETYGSLENFQGKMNTALAGIQGSGWAWLVRDKQTGHIGIKTYANQD-PVV  183
            P+GALA+AI++ +GS + F+ + N A AG+ GSGWAWLV D   G + I T  NQD P+ 
Sbjct  1    PTGALAEAIEKDFGSFDAFKEEFNAAAAGVFGSGWAWLVYDPD-GKLEIVTTPNQDNPLT  59

Query  184  GQFQPLLGIDAWEHAYYLQYQNRKAEYFKAIWEVINWKAVEKR  226
                PLLG+D WEHAYYL YQNR+A+Y KA W V+NW  VEKR
Sbjct  60   DGLTPLLGLDVWEHAYYLDYQNRRADYVKAFWNVVNWDEVEKR  102


>CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismutases, alpha-hairpin 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and 
molecular oxygen. Three evolutionarily distinct families of 
SODs are known, of which the Mn/Fe-binding family is one. 
In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. N-terminal domain is a long alpha antiparallel 
hairpin. A small fragment of YTRE_LEPBI matches well - sequencing 
error?.
Length=82

 Score = 109 bits (275),  Expect = 7e-32, Method: Composition-based stats.
 Identities = 42/80 (53%), Positives = 54/80 (68%), Gaps = 0/80 (0%)

Query  36   TLPDLSYDYGALEPSISGKIMELHHKNHHQTYVNSYNQAIEQLQEAQAKNDIASQIALKP  95
             LPDL Y Y ALEP IS + ME+HH  HHQTYVN+ N A+E L+EA+   +     AL  
Sbjct  3    ELPDLPYAYDALEPHISKETMEIHHTKHHQTYVNNLNAALEGLEEARKPLEELIIKALLG  62

Query  96   LINFHGGGHLNHTLFWENLA  115
             +  +GGGH NH+LFW+NL+
Sbjct  63   GLFNNGGGHWNHSLFWKNLS  82



Lambda      K        H        a         alpha
   0.315    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 239472140


Query= TCONS_00035389

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismuta...  113     2e-33
CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismuta...  88.3    2e-23


>CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismutases, alpha-hairpin 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and 
molecular oxygen. Three evolutionarily distinct families of 
SODs are known, of which the Mn/Fe-binding family is one. 
In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. N-terminal domain is a long alpha antiparallel 
hairpin. A small fragment of YTRE_LEPBI matches well - sequencing 
error?.
Length=82

 Score = 113 bits (284),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 42/80 (53%), Positives = 54/80 (68%), Gaps = 0/80 (0%)

Query  36   TLPDLSYDYGALEPSISGKIMELHHKNHHQTYVNSYNQAIEQLQEAQAKNDIASQIALKP  95
             LPDL Y Y ALEP IS + ME+HH  HHQTYVN+ N A+E L+EA+   +     AL  
Sbjct  3    ELPDLPYAYDALEPHISKETMEIHHTKHHQTYVNNLNAALEGLEEARKPLEELIIKALLG  62

Query  96   LINFHGGGHLNHTLFWENLA  115
             +  +GGGH NH+LFW+NL+
Sbjct  63   GLFNNGGGHWNHSLFWKNLS  82


>CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismutases, C-terminal 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and molecular 
oxygen. Three evolutionarily distinct families of SODs 
are known, of which the Mn/Fe-binding family is one. In 
humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. C-terminal domain is a mixed alpha/beta fold.
Length=102

 Score = 88.3 bits (220),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 40/60 (67%), Gaps = 1/60 (2%)

Query  125  PSGALAKAIDETYGSLENFQGKMNTALAGIQGSGWAWLVRDKQTGHIGIKTYANQDPVVV  184
            P+GALA+AI++ +GS + F+ + N A AG+ GSGWAWLV D   G + I T  NQD  + 
Sbjct  1    PTGALAEAIEKDFGSFDAFKEEFNAAAAGVFGSGWAWLVYDPD-GKLEIVTTPNQDNPLT  59



Lambda      K        H        a         alpha
   0.313    0.128    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00035388

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismuta...  115     2e-34
CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismuta...  109     5e-32


>CDD:460691 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismutases, C-terminal 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and molecular 
oxygen. Three evolutionarily distinct families of SODs 
are known, of which the Mn/Fe-binding family is one. In 
humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. C-terminal domain is a mixed alpha/beta fold.
Length=102

 Score = 115 bits (292),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 40/76 (53%), Positives = 52/76 (68%), Gaps = 2/76 (3%)

Query  125  PSGALAKAIDETYGSLENFQGKMNTALAGIQGSGWAWLVRDKQTGHIGIKTYANQD-PVV  183
            P+GALA+AI++ +GS + F+ + N A AG+ GSGWAWLV D   G + I T  NQD P+ 
Sbjct  1    PTGALAEAIEKDFGSFDAFKEEFNAAAAGVFGSGWAWLVYDPD-GKLEIVTTPNQDNPLT  59

Query  184  GQFQPLLGIDAWEHAY  199
                PLLG+D WEHAY
Sbjct  60   DGLTPLLGLDVWEHAY  75


>CDD:425457 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismutases, alpha-hairpin 
domain.  superoxide dismutases (SODs) catalyze the 
conversion of superoxide radicals to hydrogen peroxide and 
molecular oxygen. Three evolutionarily distinct families of 
SODs are known, of which the Mn/Fe-binding family is one. 
In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial 
Mn/Fe SOD. N-terminal domain is a long alpha antiparallel 
hairpin. A small fragment of YTRE_LEPBI matches well - sequencing 
error?.
Length=82

 Score = 109 bits (274),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 42/80 (53%), Positives = 54/80 (68%), Gaps = 0/80 (0%)

Query  36   TLPDLSYDYGALEPSISGKIMELHHKNHHQTYVNSYNQAIEQLQEAQAKNDIASQIALKP  95
             LPDL Y Y ALEP IS + ME+HH  HHQTYVN+ N A+E L+EA+   +     AL  
Sbjct  3    ELPDLPYAYDALEPHISKETMEIHHTKHHQTYVNNLNAALEGLEEARKPLEELIIKALLG  62

Query  96   LINFHGGGHLNHTLFWENLA  115
             +  +GGGH NH+LFW+NL+
Sbjct  63   GLFNNGGGHWNHSLFWKNLS  82



Lambda      K        H        a         alpha
   0.314    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00031116

Length=760


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 969131232


Query= TCONS_00031117

Length=900


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1155588770


Query= TCONS_00031118

Length=832


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1057973818


Query= TCONS_00031119

Length=1029


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1321012308


Query= TCONS_00031120

Length=835


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1062280360


Query= TCONS_00031121

Length=1029


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1321012308


Query= TCONS_00031122

Length=1057
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465289 pfam16870, OxoGdeHyase_C, 2-oxoglutarate dehydrogenase...  272     3e-86
CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  191     2e-56
CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  182     7e-52
CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogena...  80.7    1e-19


>CDD:465289 pfam16870, OxoGdeHyase_C, 2-oxoglutarate dehydrogenase C-terminal. 
 OxoGdeHyase_C is a family found immediately C-terminal 
to Transket_pyr, pfam02779. It is found at the C-terminus 
of 2-oxoglutarate dehydrogenase.
Length=147

 Score = 272 bits (698),  Expect = 3e-86, Method: Composition-based stats.
 Identities = 89/154 (58%), Positives = 113/154 (73%), Gaps = 8/154 (5%)

Query  895   RSDIEEFTGDSHFRWIIPDPAHGSTIDEPEKIERVILCSGQVYATLVKHREAN-GIRNTA  953
             RS +EEFT  +HF+ +IPDP     + +PEK++RV+LCSG+VY  L+K RE   GI++ A
Sbjct  1     RSSLEEFTPGTHFQRVIPDPEP---LVDPEKVKRVVLCSGKVYYDLLKEREERGGIKDVA  57

Query  954   ITRVEQLHPFPWAQLKENLDSYPNAKDIVWAQEEPLNAGAWSYTQPRIETLLNETEHHNR  1013
             I R+EQL+PFP+  LKE LD YPNA +IVW QEEP N GAWS+ QPR+ET+LNET H   
Sbjct  58    IVRIEQLYPFPFDLLKEELDKYPNAAEIVWCQEEPKNQGAWSFVQPRLETVLNETGH---  114

Query  1014  RHVLYAGRPPSASVATGLKSVHAKEEQDFLQEAF  1047
               + YAGRPPSAS ATG KSVH  E++  L +AF
Sbjct  115   -RLRYAGRPPSASPATGSKSVHLAEQEALLDDAF  147


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 191 bits (487),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 52/211 (25%), Positives = 75/211 (36%), Gaps = 41/211 (19%)

Query  681  IDWATAEALAFGSLVKEGYHVRVSGQDVERGTFSQRHAVLHDQENEATYTPLKHIAEDQG  740
            I    A   A   L K    V   G D+  GTF+    +LH                 QG
Sbjct  3    IATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLH----------------PQG  46

Query  741  SFVISNSSLSEFGALGFEYGYSLTSPNALVMWEAQFGDFANNAQCIIDQFIASGESKWLQ  800
            +  + ++ ++E   +GF  G +L  P  L   EA F DF N      D  I  G +    
Sbjct  47   AGRVIDTGIAEQAMVGFANGMALHGPL-LPPVEATFSDFLN----RADDAIRHGAALGKL  101

Query  801  RSGLVVS-LPHGYDGQGPEHSSGRMERWLQLCNEEPRQFPTQDKLDRQHQDCNMQIAYMT  859
                VV+  P G    GP H S     +L+                       +++   +
Sbjct  102  PVPFVVTRDPIGVGEDGPTHQSVEDLAFLRAIP-------------------GLKVVRPS  142

Query  860  SPANLFHILRRQIHRQFRKPLVIFFSKSLLR  890
              A    +LR  I R  RKP+V+   + LLR
Sbjct  143  DAAETKGLLRAAIRRDGRKPVVLRLPRQLLR  173


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 182 bits (465),  Expect = 7e-52, Method: Composition-based stats.
 Identities = 68/330 (21%), Positives = 130/330 (39%), Gaps = 45/330 (14%)

Query  281  KRRILDRLIWSHSFEAFLATKFPNDKRFGLEGCETLVPGMKALIDRSVEHGIKDIVIGMP  340
             RR+ D     +  +             G           +  I  ++E G  D +I   
Sbjct  6    LRRMEDARDALYKRQ----------GIRGFYHLYAGQEAAQVGIAAALEPG--DYIIPG-  52

Query  341  HRGRLNVLSNVVRKPNESIFSEFSGSAEPSDEGSGDVKYHLGMNFERPTPSGKRVQLSLV  400
            +R   N+L+  +    E IF+E  G      +G G   +     +       K  +    
Sbjct  53   YRDHGNLLARGLSL--EEIFAELYGRVA---KGKGGSMH---GYYGA-----KGNRFYGG  99

Query  401  ANPSHLE---AEDPVVLGKTRSILHYNNDEKDFNSAMGVLLHGDAAFAGQGVVYETMGFH  457
                  +        +  K R         K     + + L+GD A A QG  +E + F 
Sbjct  100  NGILGAQVPLGAGIALAAKYR--------GKK---EVAITLYGDGA-ANQGDFFEGLNFA  147

Query  458  SLPAYSTGGTIHIIVNNQIGFTTDPRYSRSTPYCSDIAKSIDAPVFHVNADDVEAVNYVC  517
            +L        I +  NNQ G +T    + ++   +D A+    P  HV+  D  AV    
Sbjct  148  ALWKLPV---IFVCENNQYGISTPAERASASTTYADRARGYGIPGLHVDGMDPLAVYQAS  204

Query  518  QVAADWRAEFKRDVVIDIVCYRKQGHNETDQPSFTQ-PLMYKRIAEQKAQLDKYVEKLIA  576
            + AA+     K   +I++V YR  GH+ +D PS  +    Y+ + ++K  + ++ E L++
Sbjct  205  KFAAERARTGKGPFLIELVTYRYGGHSMSDDPSTYRTRDEYEEVRKKKDPIQRFKEHLVS  264

Query  577  EGTFTKEDIDEHKKWVWGMLNDSFDRSKDY  606
            +G +++E++   +K V   + ++F +++  
Sbjct  265  KGVWSEEELKAIEKEVRKEVEEAFKKAESA  294


>CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogenase N-terminus. 
 This domain is found at the N-terminus of 2-oxoglutarate 
dehydrogenases.
Length=41

 Score = 80.7 bits (200),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 22/41 (54%), Positives = 30/41 (73%), Gaps = 0/41 (0%)

Query  76   DNFLSGNTANYIDEMYLAWKKDPSSVHISWQTYFKNMEEGN  116
            D+FLSG  A YI+E+Y  + KDPSSV  SW+ YF N+++G 
Sbjct  1    DSFLSGANAAYIEELYEQYLKDPSSVDPSWRAYFDNLDDGE  41



Lambda      K        H        a         alpha
   0.318    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1360656836


Query= TCONS_00031123

Length=896
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  183     2e-52
CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  173     2e-50
CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogena...  80.7    2e-19


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 183 bits (466),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 68/330 (21%), Positives = 130/330 (39%), Gaps = 45/330 (14%)

Query  281  KRRILDRLIWSHSFEAFLATKFPNDKRFGLEGCETLVPGMKALIDRSVEHGIKDIVIGMP  340
             RR+ D     +  +             G           +  I  ++E G  D +I   
Sbjct  6    LRRMEDARDALYKRQ----------GIRGFYHLYAGQEAAQVGIAAALEPG--DYIIPG-  52

Query  341  HRGRLNVLSNVVRKPNESIFSEFSGSAEPSDEGSGDVKYHLGMNFERPTPSGKRVQLSLV  400
            +R   N+L+  +    E IF+E  G      +G G   +     +       K  +    
Sbjct  53   YRDHGNLLARGLSL--EEIFAELYGRVA---KGKGGSMH---GYYGA-----KGNRFYGG  99

Query  401  ANPSHLE---AEDPVVLGKTRSILHYNNDEKDFNSAMGVLLHGDAAFAGQGVVYETMGFH  457
                  +        +  K R         K     + + L+GD A A QG  +E + F 
Sbjct  100  NGILGAQVPLGAGIALAAKYR--------GKK---EVAITLYGDGA-ANQGDFFEGLNFA  147

Query  458  SLPAYSTGGTIHIIVNNQIGFTTDPRYSRSTPYCSDIAKSIDAPVFHVNADDVEAVNYVC  517
            +L        I +  NNQ G +T    + ++   +D A+    P  HV+  D  AV    
Sbjct  148  ALWKLPV---IFVCENNQYGISTPAERASASTTYADRARGYGIPGLHVDGMDPLAVYQAS  204

Query  518  QVAADWRAEFKRDVVIDIVCYRKQGHNETDQPSFTQ-PLMYKRIAEQKAQLDKYVEKLIA  576
            + AA+     K   +I++V YR  GH+ +D PS  +    Y+ + ++K  + ++ E L++
Sbjct  205  KFAAERARTGKGPFLIELVTYRYGGHSMSDDPSTYRTRDEYEEVRKKKDPIQRFKEHLVS  264

Query  577  EGTFTKEDIDEHKKWVWGMLNDSFDRSKDY  606
            +G +++E++   +K V   + ++F +++  
Sbjct  265  KGVWSEEELKAIEKEVRKEVEEAFKKAESA  294


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 173 bits (441),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 47/199 (24%), Positives = 67/199 (34%), Gaps = 41/199 (21%)

Query  681  IDWATAEALAFGSLVKEGYHVRVSGQDVERGTFSQRHAVLHDQENEATYTPLKHIAEDQG  740
            I    A   A   L K    V   G D+  GTF+    +LH                 QG
Sbjct  3    IATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLH----------------PQG  46

Query  741  SFVISNSSLSEFGALGFEYGYSLTSPNALVMWEAQFGDFANNAQCIIDQFIASGESKWLQ  800
            +  + ++ ++E   +GF  G +L  P  L   EA F DF N      D  I  G +    
Sbjct  47   AGRVIDTGIAEQAMVGFANGMALHGPL-LPPVEATFSDFLN----RADDAIRHGAALGKL  101

Query  801  RSGLVVS-LPHGYDGQGPEHSSGRMERWLQLCNEEPRQFPTQDKLDRQHQDCNMQIAYMT  859
                VV+  P G    GP H S     +L+                       +++   +
Sbjct  102  PVPFVVTRDPIGVGEDGPTHQSVEDLAFLRAIP-------------------GLKVVRPS  142

Query  860  SPANLFHILRRQIHRQFRK  878
              A    +LR  I R  RK
Sbjct  143  DAAETKGLLRAAIRRDGRK  161


>CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogenase N-terminus. 
 This domain is found at the N-terminus of 2-oxoglutarate 
dehydrogenases.
Length=41

 Score = 80.7 bits (200),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 22/41 (54%), Positives = 30/41 (73%), Gaps = 0/41 (0%)

Query  76   DNFLSGNTANYIDEMYLAWKKDPSSVHISWQTYFKNMEEGN  116
            D+FLSG  A YI+E+Y  + KDPSSV  SW+ YF N+++G 
Sbjct  1    DSFLSGANAAYIEELYEQYLKDPSSVDPSWRAYFDNLDDGE  41



Lambda      K        H        a         alpha
   0.318    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1149846714


Query= TCONS_00031124

Length=1057
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465289 pfam16870, OxoGdeHyase_C, 2-oxoglutarate dehydrogenase...  272     3e-86
CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  191     2e-56
CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  182     7e-52
CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogena...  80.7    1e-19


>CDD:465289 pfam16870, OxoGdeHyase_C, 2-oxoglutarate dehydrogenase C-terminal. 
 OxoGdeHyase_C is a family found immediately C-terminal 
to Transket_pyr, pfam02779. It is found at the C-terminus 
of 2-oxoglutarate dehydrogenase.
Length=147

 Score = 272 bits (698),  Expect = 3e-86, Method: Composition-based stats.
 Identities = 89/154 (58%), Positives = 113/154 (73%), Gaps = 8/154 (5%)

Query  895   RSDIEEFTGDSHFRWIIPDPAHGSTIDEPEKIERVILCSGQVYATLVKHREAN-GIRNTA  953
             RS +EEFT  +HF+ +IPDP     + +PEK++RV+LCSG+VY  L+K RE   GI++ A
Sbjct  1     RSSLEEFTPGTHFQRVIPDPEP---LVDPEKVKRVVLCSGKVYYDLLKEREERGGIKDVA  57

Query  954   ITRVEQLHPFPWAQLKENLDSYPNAKDIVWAQEEPLNAGAWSYTQPRIETLLNETEHHNR  1013
             I R+EQL+PFP+  LKE LD YPNA +IVW QEEP N GAWS+ QPR+ET+LNET H   
Sbjct  58    IVRIEQLYPFPFDLLKEELDKYPNAAEIVWCQEEPKNQGAWSFVQPRLETVLNETGH---  114

Query  1014  RHVLYAGRPPSASVATGLKSVHAKEEQDFLQEAF  1047
               + YAGRPPSAS ATG KSVH  E++  L +AF
Sbjct  115   -RLRYAGRPPSASPATGSKSVHLAEQEALLDDAF  147


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 191 bits (487),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 52/211 (25%), Positives = 75/211 (36%), Gaps = 41/211 (19%)

Query  681  IDWATAEALAFGSLVKEGYHVRVSGQDVERGTFSQRHAVLHDQENEATYTPLKHIAEDQG  740
            I    A   A   L K    V   G D+  GTF+    +LH                 QG
Sbjct  3    IATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLH----------------PQG  46

Query  741  SFVISNSSLSEFGALGFEYGYSLTSPNALVMWEAQFGDFANNAQCIIDQFIASGESKWLQ  800
            +  + ++ ++E   +GF  G +L  P  L   EA F DF N      D  I  G +    
Sbjct  47   AGRVIDTGIAEQAMVGFANGMALHGPL-LPPVEATFSDFLN----RADDAIRHGAALGKL  101

Query  801  RSGLVVS-LPHGYDGQGPEHSSGRMERWLQLCNEEPRQFPTQDKLDRQHQDCNMQIAYMT  859
                VV+  P G    GP H S     +L+                       +++   +
Sbjct  102  PVPFVVTRDPIGVGEDGPTHQSVEDLAFLRAIP-------------------GLKVVRPS  142

Query  860  SPANLFHILRRQIHRQFRKPLVIFFSKSLLR  890
              A    +LR  I R  RKP+V+   + LLR
Sbjct  143  DAAETKGLLRAAIRRDGRKPVVLRLPRQLLR  173


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 182 bits (465),  Expect = 7e-52, Method: Composition-based stats.
 Identities = 68/330 (21%), Positives = 130/330 (39%), Gaps = 45/330 (14%)

Query  281  KRRILDRLIWSHSFEAFLATKFPNDKRFGLEGCETLVPGMKALIDRSVEHGIKDIVIGMP  340
             RR+ D     +  +             G           +  I  ++E G  D +I   
Sbjct  6    LRRMEDARDALYKRQ----------GIRGFYHLYAGQEAAQVGIAAALEPG--DYIIPG-  52

Query  341  HRGRLNVLSNVVRKPNESIFSEFSGSAEPSDEGSGDVKYHLGMNFERPTPSGKRVQLSLV  400
            +R   N+L+  +    E IF+E  G      +G G   +     +       K  +    
Sbjct  53   YRDHGNLLARGLSL--EEIFAELYGRVA---KGKGGSMH---GYYGA-----KGNRFYGG  99

Query  401  ANPSHLE---AEDPVVLGKTRSILHYNNDEKDFNSAMGVLLHGDAAFAGQGVVYETMGFH  457
                  +        +  K R         K     + + L+GD A A QG  +E + F 
Sbjct  100  NGILGAQVPLGAGIALAAKYR--------GKK---EVAITLYGDGA-ANQGDFFEGLNFA  147

Query  458  SLPAYSTGGTIHIIVNNQIGFTTDPRYSRSTPYCSDIAKSIDAPVFHVNADDVEAVNYVC  517
            +L        I +  NNQ G +T    + ++   +D A+    P  HV+  D  AV    
Sbjct  148  ALWKLPV---IFVCENNQYGISTPAERASASTTYADRARGYGIPGLHVDGMDPLAVYQAS  204

Query  518  QVAADWRAEFKRDVVIDIVCYRKQGHNETDQPSFTQ-PLMYKRIAEQKAQLDKYVEKLIA  576
            + AA+     K   +I++V YR  GH+ +D PS  +    Y+ + ++K  + ++ E L++
Sbjct  205  KFAAERARTGKGPFLIELVTYRYGGHSMSDDPSTYRTRDEYEEVRKKKDPIQRFKEHLVS  264

Query  577  EGTFTKEDIDEHKKWVWGMLNDSFDRSKDY  606
            +G +++E++   +K V   + ++F +++  
Sbjct  265  KGVWSEEELKAIEKEVRKEVEEAFKKAESA  294


>CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogenase N-terminus. 
 This domain is found at the N-terminus of 2-oxoglutarate 
dehydrogenases.
Length=41

 Score = 80.7 bits (200),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 22/41 (54%), Positives = 30/41 (73%), Gaps = 0/41 (0%)

Query  76   DNFLSGNTANYIDEMYLAWKKDPSSVHISWQTYFKNMEEGN  116
            D+FLSG  A YI+E+Y  + KDPSSV  SW+ YF N+++G 
Sbjct  1    DSFLSGANAAYIEELYEQYLKDPSSVDPSWRAYFDNLDDGE  41



Lambda      K        H        a         alpha
   0.318    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1360656836


Query= TCONS_00031126

Length=968
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465289 pfam16870, OxoGdeHyase_C, 2-oxoglutarate dehydrogenase...  271     3e-86
CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  191     7e-57
CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  182     6e-52
CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogena...  57.2    3e-11


>CDD:465289 pfam16870, OxoGdeHyase_C, 2-oxoglutarate dehydrogenase C-terminal. 
 OxoGdeHyase_C is a family found immediately C-terminal 
to Transket_pyr, pfam02779. It is found at the C-terminus 
of 2-oxoglutarate dehydrogenase.
Length=147

 Score = 271 bits (695),  Expect = 3e-86, Method: Composition-based stats.
 Identities = 89/154 (58%), Positives = 113/154 (73%), Gaps = 8/154 (5%)

Query  806  RSDIEEFTGDSHFRWIIPDPAHGSTIDEPEKIERVILCSGQVYATLVKHREAN-GIRNTA  864
            RS +EEFT  +HF+ +IPDP     + +PEK++RV+LCSG+VY  L+K RE   GI++ A
Sbjct  1    RSSLEEFTPGTHFQRVIPDPEP---LVDPEKVKRVVLCSGKVYYDLLKEREERGGIKDVA  57

Query  865  ITRVEQLHPFPWAQLKENLDSYPNAKDIVWAQEEPLNAGAWSYTQPRIETLLNETEHHNR  924
            I R+EQL+PFP+  LKE LD YPNA +IVW QEEP N GAWS+ QPR+ET+LNET H   
Sbjct  58   IVRIEQLYPFPFDLLKEELDKYPNAAEIVWCQEEPKNQGAWSFVQPRLETVLNETGH---  114

Query  925  RHVLYAGRPPSASVATGLKSVHAKEEQDFLQEAF  958
              + YAGRPPSAS ATG KSVH  E++  L +AF
Sbjct  115  -RLRYAGRPPSASPATGSKSVHLAEQEALLDDAF  147


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 191 bits (488),  Expect = 7e-57, Method: Composition-based stats.
 Identities = 52/211 (25%), Positives = 75/211 (36%), Gaps = 41/211 (19%)

Query  592  IDWATAEALAFGSLVKEGYHVRVSGQDVERGTFSQRHAVLHDQENEATYTPLKHIAEDQG  651
            I    A   A   L K    V   G D+  GTF+    +LH                 QG
Sbjct  3    IATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLH----------------PQG  46

Query  652  SFVISNSSLSEFGALGFEYGYSLTSPNALVMWEAQFGDFANNAQCIIDQFIASGESKWLQ  711
            +  + ++ ++E   +GF  G +L  P  L   EA F DF N      D  I  G +    
Sbjct  47   AGRVIDTGIAEQAMVGFANGMALHGPL-LPPVEATFSDFLN----RADDAIRHGAALGKL  101

Query  712  RSGLVVS-LPHGYDGQGPEHSSGRMERWLQLCNEEPRQFPTQDKLDRQHQDCNMQIAYMT  770
                VV+  P G    GP H S     +L+                       +++   +
Sbjct  102  PVPFVVTRDPIGVGEDGPTHQSVEDLAFLRAIP-------------------GLKVVRPS  142

Query  771  SPANLFHILRRQIHRQFRKPLVIFFSKSLLR  801
              A    +LR  I R  RKP+V+   + LLR
Sbjct  143  DAAETKGLLRAAIRRDGRKPVVLRLPRQLLR  173


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 182 bits (464),  Expect = 6e-52, Method: Composition-based stats.
 Identities = 68/330 (21%), Positives = 130/330 (39%), Gaps = 45/330 (14%)

Query  192  KRRILDRLIWSHSFEAFLATKFPNDKRFGLEGCETLVPGMKALIDRSVEHGIKDIVIGMP  251
             RR+ D     +  +             G           +  I  ++E G  D +I   
Sbjct  6    LRRMEDARDALYKRQ----------GIRGFYHLYAGQEAAQVGIAAALEPG--DYIIPG-  52

Query  252  HRGRLNVLSNVVRKPNESIFSEFSGSAEPSDEGSGDVKYHLGMNFERPTPSGKRVQLSLV  311
            +R   N+L+  +    E IF+E  G      +G G   +     +       K  +    
Sbjct  53   YRDHGNLLARGLSL--EEIFAELYGRVA---KGKGGSMH---GYYGA-----KGNRFYGG  99

Query  312  ANPSHLE---AEDPVVLGKTRSILHYNNDEKDFNSAMGVLLHGDAAFAGQGVVYETMGFH  368
                  +        +  K R         K     + + L+GD A A QG  +E + F 
Sbjct  100  NGILGAQVPLGAGIALAAKYR--------GKK---EVAITLYGDGA-ANQGDFFEGLNFA  147

Query  369  SLPAYSTGGTIHIIVNNQIGFTTDPRYSRSTPYCSDIAKSIDAPVFHVNADDVEAVNYVC  428
            +L        I +  NNQ G +T    + ++   +D A+    P  HV+  D  AV    
Sbjct  148  ALWKLPV---IFVCENNQYGISTPAERASASTTYADRARGYGIPGLHVDGMDPLAVYQAS  204

Query  429  QVAADWRAEFKRDVVIDIVCYRKQGHNETDQPSFTQ-PLMYKRIAEQKAQLDKYVEKLIA  487
            + AA+     K   +I++V YR  GH+ +D PS  +    Y+ + ++K  + ++ E L++
Sbjct  205  KFAAERARTGKGPFLIELVTYRYGGHSMSDDPSTYRTRDEYEEVRKKKDPIQRFKEHLVS  264

Query  488  EGTFTKEDIDEHKKWVWGMLNDSFDRSKDY  517
            +G +++E++   +K V   + ++F +++  
Sbjct  265  KGVWSEEELKAIEKEVRKEVEEAFKKAESA  294


>CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogenase N-terminus. 
 This domain is found at the N-terminus of 2-oxoglutarate 
dehydrogenases.
Length=41

 Score = 57.2 bits (139),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 0/27 (0%)

Query  1   MYLAWKKDPSSVHISWQTYFKNMEEGN  27
           +Y  + KDPSSV  SW+ YF N+++G 
Sbjct  15  LYEQYLKDPSSVDPSWRAYFDNLDDGE  41



Lambda      K        H        a         alpha
   0.318    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1234643872


Query= TCONS_00035391

Length=896
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  183     2e-52
CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  173     2e-50
CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogena...  80.7    2e-19


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 183 bits (466),  Expect = 2e-52, Method: Composition-based stats.
 Identities = 68/330 (21%), Positives = 130/330 (39%), Gaps = 45/330 (14%)

Query  281  KRRILDRLIWSHSFEAFLATKFPNDKRFGLEGCETLVPGMKALIDRSVEHGIKDIVIGMP  340
             RR+ D     +  +             G           +  I  ++E G  D +I   
Sbjct  6    LRRMEDARDALYKRQ----------GIRGFYHLYAGQEAAQVGIAAALEPG--DYIIPG-  52

Query  341  HRGRLNVLSNVVRKPNESIFSEFSGSAEPSDEGSGDVKYHLGMNFERPTPSGKRVQLSLV  400
            +R   N+L+  +    E IF+E  G      +G G   +     +       K  +    
Sbjct  53   YRDHGNLLARGLSL--EEIFAELYGRVA---KGKGGSMH---GYYGA-----KGNRFYGG  99

Query  401  ANPSHLE---AEDPVVLGKTRSILHYNNDEKDFNSAMGVLLHGDAAFAGQGVVYETMGFH  457
                  +        +  K R         K     + + L+GD A A QG  +E + F 
Sbjct  100  NGILGAQVPLGAGIALAAKYR--------GKK---EVAITLYGDGA-ANQGDFFEGLNFA  147

Query  458  SLPAYSTGGTIHIIVNNQIGFTTDPRYSRSTPYCSDIAKSIDAPVFHVNADDVEAVNYVC  517
            +L        I +  NNQ G +T    + ++   +D A+    P  HV+  D  AV    
Sbjct  148  ALWKLPV---IFVCENNQYGISTPAERASASTTYADRARGYGIPGLHVDGMDPLAVYQAS  204

Query  518  QVAADWRAEFKRDVVIDIVCYRKQGHNETDQPSFTQ-PLMYKRIAEQKAQLDKYVEKLIA  576
            + AA+     K   +I++V YR  GH+ +D PS  +    Y+ + ++K  + ++ E L++
Sbjct  205  KFAAERARTGKGPFLIELVTYRYGGHSMSDDPSTYRTRDEYEEVRKKKDPIQRFKEHLVS  264

Query  577  EGTFTKEDIDEHKKWVWGMLNDSFDRSKDY  606
            +G +++E++   +K V   + ++F +++  
Sbjct  265  KGVWSEEELKAIEKEVRKEVEEAFKKAESA  294


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 173 bits (441),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 47/199 (24%), Positives = 67/199 (34%), Gaps = 41/199 (21%)

Query  681  IDWATAEALAFGSLVKEGYHVRVSGQDVERGTFSQRHAVLHDQENEATYTPLKHIAEDQG  740
            I    A   A   L K    V   G D+  GTF+    +LH                 QG
Sbjct  3    IATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLH----------------PQG  46

Query  741  SFVISNSSLSEFGALGFEYGYSLTSPNALVMWEAQFGDFANNAQCIIDQFIASGESKWLQ  800
            +  + ++ ++E   +GF  G +L  P  L   EA F DF N      D  I  G +    
Sbjct  47   AGRVIDTGIAEQAMVGFANGMALHGPL-LPPVEATFSDFLN----RADDAIRHGAALGKL  101

Query  801  RSGLVVS-LPHGYDGQGPEHSSGRMERWLQLCNEEPRQFPTQDKLDRQHQDCNMQIAYMT  859
                VV+  P G    GP H S     +L+                       +++   +
Sbjct  102  PVPFVVTRDPIGVGEDGPTHQSVEDLAFLRAIP-------------------GLKVVRPS  142

Query  860  SPANLFHILRRQIHRQFRK  878
              A    +LR  I R  RK
Sbjct  143  DAAETKGLLRAAIRRDGRK  161


>CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogenase N-terminus. 
 This domain is found at the N-terminus of 2-oxoglutarate 
dehydrogenases.
Length=41

 Score = 80.7 bits (200),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 22/41 (54%), Positives = 30/41 (73%), Gaps = 0/41 (0%)

Query  76   DNFLSGNTANYIDEMYLAWKKDPSSVHISWQTYFKNMEEGN  116
            D+FLSG  A YI+E+Y  + KDPSSV  SW+ YF N+++G 
Sbjct  1    DSFLSGANAAYIEELYEQYLKDPSSVDPSWRAYFDNLDDGE  41



Lambda      K        H        a         alpha
   0.318    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0729    0.140     1.90     42.6     43.6 

Effective search space used: 1149846714


Query= TCONS_00035392

Length=1057
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465289 pfam16870, OxoGdeHyase_C, 2-oxoglutarate dehydrogenase...  272     3e-86
CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  191     2e-56
CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  182     7e-52
CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogena...  80.7    1e-19


>CDD:465289 pfam16870, OxoGdeHyase_C, 2-oxoglutarate dehydrogenase C-terminal. 
 OxoGdeHyase_C is a family found immediately C-terminal 
to Transket_pyr, pfam02779. It is found at the C-terminus 
of 2-oxoglutarate dehydrogenase.
Length=147

 Score = 272 bits (698),  Expect = 3e-86, Method: Composition-based stats.
 Identities = 89/154 (58%), Positives = 113/154 (73%), Gaps = 8/154 (5%)

Query  895   RSDIEEFTGDSHFRWIIPDPAHGSTIDEPEKIERVILCSGQVYATLVKHREAN-GIRNTA  953
             RS +EEFT  +HF+ +IPDP     + +PEK++RV+LCSG+VY  L+K RE   GI++ A
Sbjct  1     RSSLEEFTPGTHFQRVIPDPEP---LVDPEKVKRVVLCSGKVYYDLLKEREERGGIKDVA  57

Query  954   ITRVEQLHPFPWAQLKENLDSYPNAKDIVWAQEEPLNAGAWSYTQPRIETLLNETEHHNR  1013
             I R+EQL+PFP+  LKE LD YPNA +IVW QEEP N GAWS+ QPR+ET+LNET H   
Sbjct  58    IVRIEQLYPFPFDLLKEELDKYPNAAEIVWCQEEPKNQGAWSFVQPRLETVLNETGH---  114

Query  1014  RHVLYAGRPPSASVATGLKSVHAKEEQDFLQEAF  1047
               + YAGRPPSAS ATG KSVH  E++  L +AF
Sbjct  115   -RLRYAGRPPSASPATGSKSVHLAEQEALLDDAF  147


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 191 bits (487),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 52/211 (25%), Positives = 75/211 (36%), Gaps = 41/211 (19%)

Query  681  IDWATAEALAFGSLVKEGYHVRVSGQDVERGTFSQRHAVLHDQENEATYTPLKHIAEDQG  740
            I    A   A   L K    V   G D+  GTF+    +LH                 QG
Sbjct  3    IATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLH----------------PQG  46

Query  741  SFVISNSSLSEFGALGFEYGYSLTSPNALVMWEAQFGDFANNAQCIIDQFIASGESKWLQ  800
            +  + ++ ++E   +GF  G +L  P  L   EA F DF N      D  I  G +    
Sbjct  47   AGRVIDTGIAEQAMVGFANGMALHGPL-LPPVEATFSDFLN----RADDAIRHGAALGKL  101

Query  801  RSGLVVS-LPHGYDGQGPEHSSGRMERWLQLCNEEPRQFPTQDKLDRQHQDCNMQIAYMT  859
                VV+  P G    GP H S     +L+                       +++   +
Sbjct  102  PVPFVVTRDPIGVGEDGPTHQSVEDLAFLRAIP-------------------GLKVVRPS  142

Query  860  SPANLFHILRRQIHRQFRKPLVIFFSKSLLR  890
              A    +LR  I R  RKP+V+   + LLR
Sbjct  143  DAAETKGLLRAAIRRDGRKPVVLRLPRQLLR  173


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 182 bits (465),  Expect = 7e-52, Method: Composition-based stats.
 Identities = 68/330 (21%), Positives = 130/330 (39%), Gaps = 45/330 (14%)

Query  281  KRRILDRLIWSHSFEAFLATKFPNDKRFGLEGCETLVPGMKALIDRSVEHGIKDIVIGMP  340
             RR+ D     +  +             G           +  I  ++E G  D +I   
Sbjct  6    LRRMEDARDALYKRQ----------GIRGFYHLYAGQEAAQVGIAAALEPG--DYIIPG-  52

Query  341  HRGRLNVLSNVVRKPNESIFSEFSGSAEPSDEGSGDVKYHLGMNFERPTPSGKRVQLSLV  400
            +R   N+L+  +    E IF+E  G      +G G   +     +       K  +    
Sbjct  53   YRDHGNLLARGLSL--EEIFAELYGRVA---KGKGGSMH---GYYGA-----KGNRFYGG  99

Query  401  ANPSHLE---AEDPVVLGKTRSILHYNNDEKDFNSAMGVLLHGDAAFAGQGVVYETMGFH  457
                  +        +  K R         K     + + L+GD A A QG  +E + F 
Sbjct  100  NGILGAQVPLGAGIALAAKYR--------GKK---EVAITLYGDGA-ANQGDFFEGLNFA  147

Query  458  SLPAYSTGGTIHIIVNNQIGFTTDPRYSRSTPYCSDIAKSIDAPVFHVNADDVEAVNYVC  517
            +L        I +  NNQ G +T    + ++   +D A+    P  HV+  D  AV    
Sbjct  148  ALWKLPV---IFVCENNQYGISTPAERASASTTYADRARGYGIPGLHVDGMDPLAVYQAS  204

Query  518  QVAADWRAEFKRDVVIDIVCYRKQGHNETDQPSFTQ-PLMYKRIAEQKAQLDKYVEKLIA  576
            + AA+     K   +I++V YR  GH+ +D PS  +    Y+ + ++K  + ++ E L++
Sbjct  205  KFAAERARTGKGPFLIELVTYRYGGHSMSDDPSTYRTRDEYEEVRKKKDPIQRFKEHLVS  264

Query  577  EGTFTKEDIDEHKKWVWGMLNDSFDRSKDY  606
            +G +++E++   +K V   + ++F +++  
Sbjct  265  KGVWSEEELKAIEKEVRKEVEEAFKKAESA  294


>CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogenase N-terminus. 
 This domain is found at the N-terminus of 2-oxoglutarate 
dehydrogenases.
Length=41

 Score = 80.7 bits (200),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 22/41 (54%), Positives = 30/41 (73%), Gaps = 0/41 (0%)

Query  76   DNFLSGNTANYIDEMYLAWKKDPSSVHISWQTYFKNMEEGN  116
            D+FLSG  A YI+E+Y  + KDPSSV  SW+ YF N+++G 
Sbjct  1    DSFLSGANAAYIEELYEQYLKDPSSVDPSWRAYFDNLDDGE  41



Lambda      K        H        a         alpha
   0.318    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1360656836


Query= TCONS_00031125

Length=968
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465289 pfam16870, OxoGdeHyase_C, 2-oxoglutarate dehydrogenase...  271     3e-86
CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  191     7e-57
CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  182     6e-52
CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogena...  57.2    3e-11


>CDD:465289 pfam16870, OxoGdeHyase_C, 2-oxoglutarate dehydrogenase C-terminal. 
 OxoGdeHyase_C is a family found immediately C-terminal 
to Transket_pyr, pfam02779. It is found at the C-terminus 
of 2-oxoglutarate dehydrogenase.
Length=147

 Score = 271 bits (695),  Expect = 3e-86, Method: Composition-based stats.
 Identities = 89/154 (58%), Positives = 113/154 (73%), Gaps = 8/154 (5%)

Query  806  RSDIEEFTGDSHFRWIIPDPAHGSTIDEPEKIERVILCSGQVYATLVKHREAN-GIRNTA  864
            RS +EEFT  +HF+ +IPDP     + +PEK++RV+LCSG+VY  L+K RE   GI++ A
Sbjct  1    RSSLEEFTPGTHFQRVIPDPEP---LVDPEKVKRVVLCSGKVYYDLLKEREERGGIKDVA  57

Query  865  ITRVEQLHPFPWAQLKENLDSYPNAKDIVWAQEEPLNAGAWSYTQPRIETLLNETEHHNR  924
            I R+EQL+PFP+  LKE LD YPNA +IVW QEEP N GAWS+ QPR+ET+LNET H   
Sbjct  58   IVRIEQLYPFPFDLLKEELDKYPNAAEIVWCQEEPKNQGAWSFVQPRLETVLNETGH---  114

Query  925  RHVLYAGRPPSASVATGLKSVHAKEEQDFLQEAF  958
              + YAGRPPSAS ATG KSVH  E++  L +AF
Sbjct  115  -RLRYAGRPPSASPATGSKSVHLAEQEALLDDAF  147


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 191 bits (488),  Expect = 7e-57, Method: Composition-based stats.
 Identities = 52/211 (25%), Positives = 75/211 (36%), Gaps = 41/211 (19%)

Query  592  IDWATAEALAFGSLVKEGYHVRVSGQDVERGTFSQRHAVLHDQENEATYTPLKHIAEDQG  651
            I    A   A   L K    V   G D+  GTF+    +LH                 QG
Sbjct  3    IATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLH----------------PQG  46

Query  652  SFVISNSSLSEFGALGFEYGYSLTSPNALVMWEAQFGDFANNAQCIIDQFIASGESKWLQ  711
            +  + ++ ++E   +GF  G +L  P  L   EA F DF N      D  I  G +    
Sbjct  47   AGRVIDTGIAEQAMVGFANGMALHGPL-LPPVEATFSDFLN----RADDAIRHGAALGKL  101

Query  712  RSGLVVS-LPHGYDGQGPEHSSGRMERWLQLCNEEPRQFPTQDKLDRQHQDCNMQIAYMT  770
                VV+  P G    GP H S     +L+                       +++   +
Sbjct  102  PVPFVVTRDPIGVGEDGPTHQSVEDLAFLRAIP-------------------GLKVVRPS  142

Query  771  SPANLFHILRRQIHRQFRKPLVIFFSKSLLR  801
              A    +LR  I R  RKP+V+   + LLR
Sbjct  143  DAAETKGLLRAAIRRDGRKPVVLRLPRQLLR  173


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 182 bits (464),  Expect = 6e-52, Method: Composition-based stats.
 Identities = 68/330 (21%), Positives = 130/330 (39%), Gaps = 45/330 (14%)

Query  192  KRRILDRLIWSHSFEAFLATKFPNDKRFGLEGCETLVPGMKALIDRSVEHGIKDIVIGMP  251
             RR+ D     +  +             G           +  I  ++E G  D +I   
Sbjct  6    LRRMEDARDALYKRQ----------GIRGFYHLYAGQEAAQVGIAAALEPG--DYIIPG-  52

Query  252  HRGRLNVLSNVVRKPNESIFSEFSGSAEPSDEGSGDVKYHLGMNFERPTPSGKRVQLSLV  311
            +R   N+L+  +    E IF+E  G      +G G   +     +       K  +    
Sbjct  53   YRDHGNLLARGLSL--EEIFAELYGRVA---KGKGGSMH---GYYGA-----KGNRFYGG  99

Query  312  ANPSHLE---AEDPVVLGKTRSILHYNNDEKDFNSAMGVLLHGDAAFAGQGVVYETMGFH  368
                  +        +  K R         K     + + L+GD A A QG  +E + F 
Sbjct  100  NGILGAQVPLGAGIALAAKYR--------GKK---EVAITLYGDGA-ANQGDFFEGLNFA  147

Query  369  SLPAYSTGGTIHIIVNNQIGFTTDPRYSRSTPYCSDIAKSIDAPVFHVNADDVEAVNYVC  428
            +L        I +  NNQ G +T    + ++   +D A+    P  HV+  D  AV    
Sbjct  148  ALWKLPV---IFVCENNQYGISTPAERASASTTYADRARGYGIPGLHVDGMDPLAVYQAS  204

Query  429  QVAADWRAEFKRDVVIDIVCYRKQGHNETDQPSFTQ-PLMYKRIAEQKAQLDKYVEKLIA  487
            + AA+     K   +I++V YR  GH+ +D PS  +    Y+ + ++K  + ++ E L++
Sbjct  205  KFAAERARTGKGPFLIELVTYRYGGHSMSDDPSTYRTRDEYEEVRKKKDPIQRFKEHLVS  264

Query  488  EGTFTKEDIDEHKKWVWGMLNDSFDRSKDY  517
            +G +++E++   +K V   + ++F +++  
Sbjct  265  KGVWSEEELKAIEKEVRKEVEEAFKKAESA  294


>CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogenase N-terminus. 
 This domain is found at the N-terminus of 2-oxoglutarate 
dehydrogenases.
Length=41

 Score = 57.2 bits (139),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 0/27 (0%)

Query  1   MYLAWKKDPSSVHISWQTYFKNMEEGN  27
           +Y  + KDPSSV  SW+ YF N+++G 
Sbjct  15  LYEQYLKDPSSVDPSWRAYFDNLDDGE  41



Lambda      K        H        a         alpha
   0.318    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1234643872


Query= TCONS_00035393

Length=754
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  181     3e-52
CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogena...  81.4    7e-20
CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  63.3    5e-12


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 181 bits (462),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 68/330 (21%), Positives = 130/330 (39%), Gaps = 45/330 (14%)

Query  281  KRRILDRLIWSHSFEAFLATKFPNDKRFGLEGCETLVPGMKALIDRSVEHGIKDIVIGMP  340
             RR+ D     +  +             G           +  I  ++E G  D +I   
Sbjct  6    LRRMEDARDALYKRQ----------GIRGFYHLYAGQEAAQVGIAAALEPG--DYIIPG-  52

Query  341  HRGRLNVLSNVVRKPNESIFSEFSGSAEPSDEGSGDVKYHLGMNFERPTPSGKRVQLSLV  400
            +R   N+L+  +    E IF+E  G      +G G   +     +       K  +    
Sbjct  53   YRDHGNLLARGLSL--EEIFAELYGRVA---KGKGGSMH---GYYGA-----KGNRFYGG  99

Query  401  ANPSHLE---AEDPVVLGKTRSILHYNNDEKDFNSAMGVLLHGDAAFAGQGVVYETMGFH  457
                  +        +  K R         K     + + L+GD A A QG  +E + F 
Sbjct  100  NGILGAQVPLGAGIALAAKYR--------GKK---EVAITLYGDGA-ANQGDFFEGLNFA  147

Query  458  SLPAYSTGGTIHIIVNNQIGFTTDPRYSRSTPYCSDIAKSIDAPVFHVNADDVEAVNYVC  517
            +L        I +  NNQ G +T    + ++   +D A+    P  HV+  D  AV    
Sbjct  148  ALWKLPV---IFVCENNQYGISTPAERASASTTYADRARGYGIPGLHVDGMDPLAVYQAS  204

Query  518  QVAADWRAEFKRDVVIDIVCYRKQGHNETDQPSFTQ-PLMYKRIAEQKAQLDKYVEKLIA  576
            + AA+     K   +I++V YR  GH+ +D PS  +    Y+ + ++K  + ++ E L++
Sbjct  205  KFAAERARTGKGPFLIELVTYRYGGHSMSDDPSTYRTRDEYEEVRKKKDPIQRFKEHLVS  264

Query  577  EGTFTKEDIDEHKKWVWGMLNDSFDRSKDY  606
            +G +++E++   +K V   + ++F +++  
Sbjct  265  KGVWSEEELKAIEKEVRKEVEEAFKKAESA  294


>CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogenase N-terminus. 
 This domain is found at the N-terminus of 2-oxoglutarate 
dehydrogenases.
Length=41

 Score = 81.4 bits (202),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 22/41 (54%), Positives = 30/41 (73%), Gaps = 0/41 (0%)

Query  76   DNFLSGNTANYIDEMYLAWKKDPSSVHISWQTYFKNMEEGN  116
            D+FLSG  A YI+E+Y  + KDPSSV  SW+ YF N+++G 
Sbjct  1    DSFLSGANAAYIEELYEQYLKDPSSVDPSWRAYFDNLDDGE  41


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 63.3 bits (155),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 16/74 (22%), Positives = 25/74 (34%), Gaps = 16/74 (22%)

Query  681  IDWATAEALAFGSLVKEGYHVRVSGQDVERGTFSQRHAVLHDQENEATYTPLKHIAEDQG  740
            I    A   A   L K    V   G D+  GTF+    +LH                 QG
Sbjct  3    IATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLH----------------PQG  46

Query  741  SFVISNSSLSEFGA  754
            +  + ++ ++E   
Sbjct  47   AGRVIDTGIAEQAM  60



Lambda      K        H        a         alpha
   0.317    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 960400320


Query= TCONS_00035394

Length=754
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  181     3e-52
CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogena...  81.4    7e-20
CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  63.3    5e-12


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 181 bits (462),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 68/330 (21%), Positives = 130/330 (39%), Gaps = 45/330 (14%)

Query  281  KRRILDRLIWSHSFEAFLATKFPNDKRFGLEGCETLVPGMKALIDRSVEHGIKDIVIGMP  340
             RR+ D     +  +             G           +  I  ++E G  D +I   
Sbjct  6    LRRMEDARDALYKRQ----------GIRGFYHLYAGQEAAQVGIAAALEPG--DYIIPG-  52

Query  341  HRGRLNVLSNVVRKPNESIFSEFSGSAEPSDEGSGDVKYHLGMNFERPTPSGKRVQLSLV  400
            +R   N+L+  +    E IF+E  G      +G G   +     +       K  +    
Sbjct  53   YRDHGNLLARGLSL--EEIFAELYGRVA---KGKGGSMH---GYYGA-----KGNRFYGG  99

Query  401  ANPSHLE---AEDPVVLGKTRSILHYNNDEKDFNSAMGVLLHGDAAFAGQGVVYETMGFH  457
                  +        +  K R         K     + + L+GD A A QG  +E + F 
Sbjct  100  NGILGAQVPLGAGIALAAKYR--------GKK---EVAITLYGDGA-ANQGDFFEGLNFA  147

Query  458  SLPAYSTGGTIHIIVNNQIGFTTDPRYSRSTPYCSDIAKSIDAPVFHVNADDVEAVNYVC  517
            +L        I +  NNQ G +T    + ++   +D A+    P  HV+  D  AV    
Sbjct  148  ALWKLPV---IFVCENNQYGISTPAERASASTTYADRARGYGIPGLHVDGMDPLAVYQAS  204

Query  518  QVAADWRAEFKRDVVIDIVCYRKQGHNETDQPSFTQ-PLMYKRIAEQKAQLDKYVEKLIA  576
            + AA+     K   +I++V YR  GH+ +D PS  +    Y+ + ++K  + ++ E L++
Sbjct  205  KFAAERARTGKGPFLIELVTYRYGGHSMSDDPSTYRTRDEYEEVRKKKDPIQRFKEHLVS  264

Query  577  EGTFTKEDIDEHKKWVWGMLNDSFDRSKDY  606
            +G +++E++   +K V   + ++F +++  
Sbjct  265  KGVWSEEELKAIEKEVRKEVEEAFKKAESA  294


>CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogenase N-terminus. 
 This domain is found at the N-terminus of 2-oxoglutarate 
dehydrogenases.
Length=41

 Score = 81.4 bits (202),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 22/41 (54%), Positives = 30/41 (73%), Gaps = 0/41 (0%)

Query  76   DNFLSGNTANYIDEMYLAWKKDPSSVHISWQTYFKNMEEGN  116
            D+FLSG  A YI+E+Y  + KDPSSV  SW+ YF N+++G 
Sbjct  1    DSFLSGANAAYIEELYEQYLKDPSSVDPSWRAYFDNLDDGE  41


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 63.3 bits (155),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 16/74 (22%), Positives = 25/74 (34%), Gaps = 16/74 (22%)

Query  681  IDWATAEALAFGSLVKEGYHVRVSGQDVERGTFSQRHAVLHDQENEATYTPLKHIAEDQG  740
            I    A   A   L K    V   G D+  GTF+    +LH                 QG
Sbjct  3    IATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLH----------------PQG  46

Query  741  SFVISNSSLSEFGA  754
            +  + ++ ++E   
Sbjct  47   AGRVIDTGIAEQAM  60



Lambda      K        H        a         alpha
   0.317    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 960400320


Query= TCONS_00031127

Length=754
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  181     3e-52
CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogena...  81.4    7e-20
CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  63.3    5e-12


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 181 bits (462),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 68/330 (21%), Positives = 130/330 (39%), Gaps = 45/330 (14%)

Query  281  KRRILDRLIWSHSFEAFLATKFPNDKRFGLEGCETLVPGMKALIDRSVEHGIKDIVIGMP  340
             RR+ D     +  +             G           +  I  ++E G  D +I   
Sbjct  6    LRRMEDARDALYKRQ----------GIRGFYHLYAGQEAAQVGIAAALEPG--DYIIPG-  52

Query  341  HRGRLNVLSNVVRKPNESIFSEFSGSAEPSDEGSGDVKYHLGMNFERPTPSGKRVQLSLV  400
            +R   N+L+  +    E IF+E  G      +G G   +     +       K  +    
Sbjct  53   YRDHGNLLARGLSL--EEIFAELYGRVA---KGKGGSMH---GYYGA-----KGNRFYGG  99

Query  401  ANPSHLE---AEDPVVLGKTRSILHYNNDEKDFNSAMGVLLHGDAAFAGQGVVYETMGFH  457
                  +        +  K R         K     + + L+GD A A QG  +E + F 
Sbjct  100  NGILGAQVPLGAGIALAAKYR--------GKK---EVAITLYGDGA-ANQGDFFEGLNFA  147

Query  458  SLPAYSTGGTIHIIVNNQIGFTTDPRYSRSTPYCSDIAKSIDAPVFHVNADDVEAVNYVC  517
            +L        I +  NNQ G +T    + ++   +D A+    P  HV+  D  AV    
Sbjct  148  ALWKLPV---IFVCENNQYGISTPAERASASTTYADRARGYGIPGLHVDGMDPLAVYQAS  204

Query  518  QVAADWRAEFKRDVVIDIVCYRKQGHNETDQPSFTQ-PLMYKRIAEQKAQLDKYVEKLIA  576
            + AA+     K   +I++V YR  GH+ +D PS  +    Y+ + ++K  + ++ E L++
Sbjct  205  KFAAERARTGKGPFLIELVTYRYGGHSMSDDPSTYRTRDEYEEVRKKKDPIQRFKEHLVS  264

Query  577  EGTFTKEDIDEHKKWVWGMLNDSFDRSKDY  606
            +G +++E++   +K V   + ++F +++  
Sbjct  265  KGVWSEEELKAIEKEVRKEVEEAFKKAESA  294


>CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogenase N-terminus. 
 This domain is found at the N-terminus of 2-oxoglutarate 
dehydrogenases.
Length=41

 Score = 81.4 bits (202),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 22/41 (54%), Positives = 30/41 (73%), Gaps = 0/41 (0%)

Query  76   DNFLSGNTANYIDEMYLAWKKDPSSVHISWQTYFKNMEEGN  116
            D+FLSG  A YI+E+Y  + KDPSSV  SW+ YF N+++G 
Sbjct  1    DSFLSGANAAYIEELYEQYLKDPSSVDPSWRAYFDNLDDGE  41


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 63.3 bits (155),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 16/74 (22%), Positives = 25/74 (34%), Gaps = 16/74 (22%)

Query  681  IDWATAEALAFGSLVKEGYHVRVSGQDVERGTFSQRHAVLHDQENEATYTPLKHIAEDQG  740
            I    A   A   L K    V   G D+  GTF+    +LH                 QG
Sbjct  3    IATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLH----------------PQG  46

Query  741  SFVISNSSLSEFGA  754
            +  + ++ ++E   
Sbjct  47   AGRVIDTGIAEQAM  60



Lambda      K        H        a         alpha
   0.317    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 960400320


Query= TCONS_00031128

Length=1057
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465289 pfam16870, OxoGdeHyase_C, 2-oxoglutarate dehydrogenase...  272     3e-86
CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine bin...  191     2e-56
CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component. This fam...  182     7e-52
CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogena...  80.7    1e-19


>CDD:465289 pfam16870, OxoGdeHyase_C, 2-oxoglutarate dehydrogenase C-terminal. 
 OxoGdeHyase_C is a family found immediately C-terminal 
to Transket_pyr, pfam02779. It is found at the C-terminus 
of 2-oxoglutarate dehydrogenase.
Length=147

 Score = 272 bits (698),  Expect = 3e-86, Method: Composition-based stats.
 Identities = 89/154 (58%), Positives = 113/154 (73%), Gaps = 8/154 (5%)

Query  895   RSDIEEFTGDSHFRWIIPDPAHGSTIDEPEKIERVILCSGQVYATLVKHREAN-GIRNTA  953
             RS +EEFT  +HF+ +IPDP     + +PEK++RV+LCSG+VY  L+K RE   GI++ A
Sbjct  1     RSSLEEFTPGTHFQRVIPDPEP---LVDPEKVKRVVLCSGKVYYDLLKEREERGGIKDVA  57

Query  954   ITRVEQLHPFPWAQLKENLDSYPNAKDIVWAQEEPLNAGAWSYTQPRIETLLNETEHHNR  1013
             I R+EQL+PFP+  LKE LD YPNA +IVW QEEP N GAWS+ QPR+ET+LNET H   
Sbjct  58    IVRIEQLYPFPFDLLKEELDKYPNAAEIVWCQEEPKNQGAWSFVQPRLETVLNETGH---  114

Query  1014  RHVLYAGRPPSASVATGLKSVHAKEEQDFLQEAF  1047
               + YAGRPPSAS ATG KSVH  E++  L +AF
Sbjct  115   -RLRYAGRPPSASPATGSKSVHLAEQEALLDDAF  147


>CDD:460692 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
 This family includes transketolase enzymes, pyruvate 
dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Length=174

 Score = 191 bits (487),  Expect = 2e-56, Method: Composition-based stats.
 Identities = 52/211 (25%), Positives = 75/211 (36%), Gaps = 41/211 (19%)

Query  681  IDWATAEALAFGSLVKEGYHVRVSGQDVERGTFSQRHAVLHDQENEATYTPLKHIAEDQG  740
            I    A   A   L K    V   G D+  GTF+    +LH                 QG
Sbjct  3    IATRKASGEALAELAKRDPRVVGGGADLAGGTFTVTKGLLH----------------PQG  46

Query  741  SFVISNSSLSEFGALGFEYGYSLTSPNALVMWEAQFGDFANNAQCIIDQFIASGESKWLQ  800
            +  + ++ ++E   +GF  G +L  P  L   EA F DF N      D  I  G +    
Sbjct  47   AGRVIDTGIAEQAMVGFANGMALHGPL-LPPVEATFSDFLN----RADDAIRHGAALGKL  101

Query  801  RSGLVVS-LPHGYDGQGPEHSSGRMERWLQLCNEEPRQFPTQDKLDRQHQDCNMQIAYMT  859
                VV+  P G    GP H S     +L+                       +++   +
Sbjct  102  PVPFVVTRDPIGVGEDGPTHQSVEDLAFLRAIP-------------------GLKVVRPS  142

Query  860  SPANLFHILRRQIHRQFRKPLVIFFSKSLLR  890
              A    +LR  I R  RKP+V+   + LLR
Sbjct  143  DAAETKGLLRAAIRRDGRKPVVLRLPRQLLR  173


>CDD:395548 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses 
thiamine pyrophosphate as a cofactor. This family includes 
pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate 
dehydrogenase.
Length=300

 Score = 182 bits (465),  Expect = 7e-52, Method: Composition-based stats.
 Identities = 68/330 (21%), Positives = 130/330 (39%), Gaps = 45/330 (14%)

Query  281  KRRILDRLIWSHSFEAFLATKFPNDKRFGLEGCETLVPGMKALIDRSVEHGIKDIVIGMP  340
             RR+ D     +  +             G           +  I  ++E G  D +I   
Sbjct  6    LRRMEDARDALYKRQ----------GIRGFYHLYAGQEAAQVGIAAALEPG--DYIIPG-  52

Query  341  HRGRLNVLSNVVRKPNESIFSEFSGSAEPSDEGSGDVKYHLGMNFERPTPSGKRVQLSLV  400
            +R   N+L+  +    E IF+E  G      +G G   +     +       K  +    
Sbjct  53   YRDHGNLLARGLSL--EEIFAELYGRVA---KGKGGSMH---GYYGA-----KGNRFYGG  99

Query  401  ANPSHLE---AEDPVVLGKTRSILHYNNDEKDFNSAMGVLLHGDAAFAGQGVVYETMGFH  457
                  +        +  K R         K     + + L+GD A A QG  +E + F 
Sbjct  100  NGILGAQVPLGAGIALAAKYR--------GKK---EVAITLYGDGA-ANQGDFFEGLNFA  147

Query  458  SLPAYSTGGTIHIIVNNQIGFTTDPRYSRSTPYCSDIAKSIDAPVFHVNADDVEAVNYVC  517
            +L        I +  NNQ G +T    + ++   +D A+    P  HV+  D  AV    
Sbjct  148  ALWKLPV---IFVCENNQYGISTPAERASASTTYADRARGYGIPGLHVDGMDPLAVYQAS  204

Query  518  QVAADWRAEFKRDVVIDIVCYRKQGHNETDQPSFTQ-PLMYKRIAEQKAQLDKYVEKLIA  576
            + AA+     K   +I++V YR  GH+ +D PS  +    Y+ + ++K  + ++ E L++
Sbjct  205  KFAAERARTGKGPFLIELVTYRYGGHSMSDDPSTYRTRDEYEEVRKKKDPIQRFKEHLVS  264

Query  577  EGTFTKEDIDEHKKWVWGMLNDSFDRSKDY  606
            +G +++E++   +K V   + ++F +++  
Sbjct  265  KGVWSEEELKAIEKEVRKEVEEAFKKAESA  294


>CDD:465008 pfam16078, 2-oxogl_dehyd_N, 2-oxoglutarate dehydrogenase N-terminus. 
 This domain is found at the N-terminus of 2-oxoglutarate 
dehydrogenases.
Length=41

 Score = 80.7 bits (200),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 22/41 (54%), Positives = 30/41 (73%), Gaps = 0/41 (0%)

Query  76   DNFLSGNTANYIDEMYLAWKKDPSSVHISWQTYFKNMEEGN  116
            D+FLSG  A YI+E+Y  + KDPSSV  SW+ YF N+++G 
Sbjct  1    DSFLSGANAAYIEELYEQYLKDPSSVDPSWRAYFDNLDDGE  41



Lambda      K        H        a         alpha
   0.318    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1360656836


Query= TCONS_00031129

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465289 pfam16870, OxoGdeHyase_C, 2-oxoglutarate dehydrogenase...  263     3e-91


>CDD:465289 pfam16870, OxoGdeHyase_C, 2-oxoglutarate dehydrogenase C-terminal. 
 OxoGdeHyase_C is a family found immediately C-terminal 
to Transket_pyr, pfam02779. It is found at the C-terminus 
of 2-oxoglutarate dehydrogenase.
Length=147

 Score = 263 bits (674),  Expect = 3e-91, Method: Composition-based stats.
 Identities = 89/154 (58%), Positives = 113/154 (73%), Gaps = 8/154 (5%)

Query  72   RSDIEEFTGDSHFRWIIPDPAHGSTIDEPEKIERVILCSGQVYATLVKHREAN-GIRNTA  130
            RS +EEFT  +HF+ +IPDP     + +PEK++RV+LCSG+VY  L+K RE   GI++ A
Sbjct  1    RSSLEEFTPGTHFQRVIPDPEP---LVDPEKVKRVVLCSGKVYYDLLKEREERGGIKDVA  57

Query  131  ITRVEQLHPFPWAQLKENLDSYPNAKDIVWAQEEPLNAGAWSYTQPRIETLLNETEHHNR  190
            I R+EQL+PFP+  LKE LD YPNA +IVW QEEP N GAWS+ QPR+ET+LNET H   
Sbjct  58   IVRIEQLYPFPFDLLKEELDKYPNAAEIVWCQEEPKNQGAWSFVQPRLETVLNETGH---  114

Query  191  RHVLYAGRPPSASVATGLKSVHAKEEQDFLQEAF  224
              + YAGRPPSAS ATG KSVH  E++  L +AF
Sbjct  115  -RLRYAGRPPSASPATGSKSVHLAEQEALLDDAF  147



Lambda      K        H        a         alpha
   0.320    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00031130

Length=583
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461089 pfam03909, BSD, BSD domain. This domain contains a dis...  66.8    1e-14


>CDD:461089 pfam03909, BSD, BSD domain.  This domain contains a distinctive 
-FW- motif. It is found in a family of eukaryotic transcription 
factors as well as a set of proteins of unknown function.
Length=55

 Score = 66.8 bits (164),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query  178  NISKEQIQLIFSQHPLVKRVYDENVP-KLSEQQFWSRFFQSRLFKKLRGE  226
              ++E  QL+  + P ++++Y+E VP K+SE++FWSR+F      K   E
Sbjct  6    EKTEEIAQLLLKEDPELRKLYEELVPSKVSEEEFWSRYFYLLRALKQEEE  55



Lambda      K        H        a         alpha
   0.314    0.129    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 733764148


Query= TCONS_00035395

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00031131

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00031132

Length=443


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00035397

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433132 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hyd...  111     4e-30
CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like               64.9    6e-14


>CDD:433132 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase. 
 This family is part of the HAD superfamily.
Length=101

 Score = 111 bits (279),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 40/109 (37%), Positives = 51/109 (47%), Gaps = 11/109 (10%)

Query  128  FAFDIDGVLAHGNHAIPEAKEALKMLNGDNELGIKIPYILLTNGGGKTEASRCEQLSEIL  187
            F FDIDGVL  G   IP A EAL+ L          P + +TN   ++     E+L + L
Sbjct  1    FLFDIDGVLWRGGEPIPGAAEALRALRAAG-----KPVVFVTNNSSRSREEYAEKLRK-L  54

Query  188  EVPISTDQFIQSHTPMQA-LSEYYE--TVLVLGGEGQKIREVAENYGFK  233
               I  D+ I S T     L E      VLV+G EG  +RE  E  GF+
Sbjct  55   GFDIDEDEIITSGTAAADYLKERKFGKKVLVIGSEG--LREELEEAGFE  101


>CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like.  
Length=75

 Score = 64.9 bits (159),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 33/85 (39%), Gaps = 10/85 (12%)

Query  360  VYGKPERATYTYADEVLKAWMEQIHNENRLPKNIYMIGDNPQSDIVGGNMYGWNTCLVRT  419
            V GKP       A   L             P+   MIGD   +DI+G    G  T LV T
Sbjct  1    VCGKPNPGMLERALARLGL----------DPERTVMIGDRLDTDILGAREAGARTILVLT  50

Query  420  GVFQGGENDEHNPANFGVFPNVLEA  444
            GV +  + ++       V  ++ EA
Sbjct  51   GVTRPADLEKAPIRPDYVVDDLAEA  75



Lambda      K        H        a         alpha
   0.316    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00035396

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433132 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hyd...  111     4e-30
CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like               64.9    6e-14


>CDD:433132 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase. 
 This family is part of the HAD superfamily.
Length=101

 Score = 111 bits (279),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 40/109 (37%), Positives = 51/109 (47%), Gaps = 11/109 (10%)

Query  128  FAFDIDGVLAHGNHAIPEAKEALKMLNGDNELGIKIPYILLTNGGGKTEASRCEQLSEIL  187
            F FDIDGVL  G   IP A EAL+ L          P + +TN   ++     E+L + L
Sbjct  1    FLFDIDGVLWRGGEPIPGAAEALRALRAAG-----KPVVFVTNNSSRSREEYAEKLRK-L  54

Query  188  EVPISTDQFIQSHTPMQA-LSEYYE--TVLVLGGEGQKIREVAENYGFK  233
               I  D+ I S T     L E      VLV+G EG  +RE  E  GF+
Sbjct  55   GFDIDEDEIITSGTAAADYLKERKFGKKVLVIGSEG--LREELEEAGFE  101


>CDD:433056 pfam13242, Hydrolase_like, HAD-hyrolase-like.  
Length=75

 Score = 64.9 bits (159),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 33/85 (39%), Gaps = 10/85 (12%)

Query  360  VYGKPERATYTYADEVLKAWMEQIHNENRLPKNIYMIGDNPQSDIVGGNMYGWNTCLVRT  419
            V GKP       A   L             P+   MIGD   +DI+G    G  T LV T
Sbjct  1    VCGKPNPGMLERALARLGL----------DPERTVMIGDRLDTDILGAREAGARTILVLT  50

Query  420  GVFQGGENDEHNPANFGVFPNVLEA  444
            GV +  + ++       V  ++ EA
Sbjct  51   GVTRPADLEKAPIRPDYVVDDLAEA  75



Lambda      K        H        a         alpha
   0.316    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00035398

Length=344


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00031133

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00031134

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  193     2e-60


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 193 bits (492),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 97/318 (31%), Positives = 145/318 (46%), Gaps = 67/318 (21%)

Query  18   VGFGTFASEGAKG-----ETYNAVTCALKTGYRHLDCAWFY---QNEDEVGDAIQDFLKE  69
            +G GT+   G  G     E   A+  AL+ G   +D A  Y   ++E+ +G+A++D+   
Sbjct  1    IGLGTWQLGGGWGPISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDY---  57

Query  70   NPSVKREDIFICTKV------WNHLHRYEDVIWSLENSLKKLRVDYVDLYLVHWPIAAEK  123
               VKR+ + I TKV      W      E++  SLE SLK+L  DY+DLY +HWP     
Sbjct  58   --PVKRDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWP-----  110

Query  124  ETQEKPKIGPNGKYVILEDLTKNPEPTWRAMEKLYEEGKAKAIGVSNWTIEGLEQLLKFA  183
                      +    I E        TW A+E+L +EGK +AIGVSN+  E +E+ L   
Sbjct  111  ----------DPDTPIEE--------TWDALEELKKEGKIRAIGVSNFDAEQIEKALTKG  152

Query  184  KVKPHVNQIEIHPF--LPNEELIQYCFKHDILPEAYSPLGSQ------------------  223
            K+     Q+E +       EEL++YC K+ I   AYSPLG                    
Sbjct  153  KIPIVAVQVEYNLLRRRQEEELLEYCKKNGIPLIAYSPLGGGLLTGKYTRDPDKGPGERR  212

Query  224  -NQVPTTGERVSENPTLNEIAKKGGNTLAQVLIAWGLR--RGYVVLPKSSNPARIESNFK  280
                  T   +     L EIAK+ G + AQV + W L      + +P +SNP ++E N  
Sbjct  213  RLLKKGTPLNLEALEALEEIAKEHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDNLG  272

Query  281  S--IQLSDADYEAVNNVA  296
            +    LSD +   ++ + 
Sbjct  273  ALEFPLSDEEVARIDELL  290



Lambda      K        H        a         alpha
   0.316    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 379043084


Query= TCONS_00031135

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  91.6    1e-23


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 91.6 bits (228),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 41/115 (36%), Positives = 61/115 (53%), Gaps = 19/115 (17%)

Query  18   VGFGTFASEGAKG-----ETYNAVTCALKTGYRHLDCAWFY---QNEDEVGDAIQDFLKE  69
            +G GT+   G  G     E   A+  AL+ G   +D A  Y   ++E+ +G+A++D+   
Sbjct  1    IGLGTWQLGGGWGPISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDY---  57

Query  70   NPSVKREDIFICTKV------WNHLHRYEDVIWSLENSLKKLRVDYVDLYLVHWP  118
               VKR+ + I TKV      W      E++  SLE SLK+L  DY+DLY +HWP
Sbjct  58   --PVKRDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWP  110



Lambda      K        H        a         alpha
   0.321    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00031136

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  193     2e-60


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 193 bits (493),  Expect = 2e-60, Method: Composition-based stats.
 Identities = 97/318 (31%), Positives = 145/318 (46%), Gaps = 67/318 (21%)

Query  18   VGFGTFASEGAKG-----ETYNAVTCALKTGYRHLDCAWFY---QNEDEVGDAIQDFLKE  69
            +G GT+   G  G     E   A+  AL+ G   +D A  Y   ++E+ +G+A++D+   
Sbjct  1    IGLGTWQLGGGWGPISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDY---  57

Query  70   NPSVKREDIFICTKV------WNHLHRYEDVIWSLENSLKKLRVDYVDLYLVHWPIAAEK  123
               VKR+ + I TKV      W      E++  SLE SLK+L  DY+DLY +HWP     
Sbjct  58   --PVKRDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWP-----  110

Query  124  ETQEKPKIGPNGKVVILEDLTKNPEPTWRAMEKLYEEGKAKAIGVSNWTIEGLEQLLKFA  183
                      +    I E        TW A+E+L +EGK +AIGVSN+  E +E+ L   
Sbjct  111  ----------DPDTPIEE--------TWDALEELKKEGKIRAIGVSNFDAEQIEKALTKG  152

Query  184  KVKPHVNQIEIHPF--LPNEELIQYCFKHDILPEAYSPLGSQ------------------  223
            K+     Q+E +       EEL++YC K+ I   AYSPLG                    
Sbjct  153  KIPIVAVQVEYNLLRRRQEEELLEYCKKNGIPLIAYSPLGGGLLTGKYTRDPDKGPGERR  212

Query  224  -NQVPTTGERVSENPTLNEIAKKGGNTLAQVLIAWGLR--RGYVVLPKSSNPARIESNFK  280
                  T   +     L EIAK+ G + AQV + W L      + +P +SNP ++E N  
Sbjct  213  RLLKKGTPLNLEALEALEEIAKEHGVSPAQVALRWALSKPGVTIPIPGASNPEQLEDNLG  272

Query  281  S--IQLSDADYEAVNNVA  296
            +    LSD +   ++ + 
Sbjct  273  ALEFPLSDEEVARIDELL  290



Lambda      K        H        a         alpha
   0.316    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 379043084


Query= TCONS_00035399

Length=533


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.121    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00035400

Length=423


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.121    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00035401

Length=533


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.121    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00031138

Length=356


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 421558640


Query= TCONS_00031140

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00031139

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00031137

Length=258


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00035402

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00035403

Length=258


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 282317662


Query= TCONS_00035404

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00031141

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00031143

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397252 pfam03029, ATP_bind_1, Conserved hypothetical ATP bind...  252     3e-83


>CDD:397252 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein. 
 Members of this family are found in a range of archaea 
and eukaryotes and have hypothesized ATP binding activity.
Length=238

 Score = 252 bits (645),  Expect = 3e-83, Method: Composition-based stats.
 Identities = 71/256 (28%), Positives = 123/256 (48%), Gaps = 30/256 (12%)

Query  1    MQRINAYLHSKKKMPYVLNLDPAVYSVPFESNIDIRDSINYKEVMKQYNLGPNGGILTSL  60
            +  ++  L  + +  YV+NLDPA  ++P+ ++IDIR+ I   +VM+ Y LGPNG +  ++
Sbjct  13   VGALSEILPLRGRPVYVVNLDPAAENLPYPADIDIRELITVADVMEDYGLGPNGALTVAM  72

Query  61   NLFATKVDQIISLLEKRTAPNPENPSAKPIEHILVDTPGQIEVFVWSASGSILLETLASS  120
            +     +D +   L++              ++ L DTPGQIE+F    S +I++E L S 
Sbjct  73   DFGRITLDWLDEELKRED------------DYYLFDTPGQIELFTHWDSLAIIVEALESR  120

Query  121  FPTVIAYVIDTPRTTSTSTFMSNMLYACSILYKTKLPMILVFNKTDVQDAEFAKEWMTDF  180
                  Y++DT R T  + F S +LYA SI+ +  LP ++  NK D+   EFA +W TD 
Sbjct  121  GALGAVYLVDTRRLTDPTDFFSGLLYALSIMLRLGLPFVVALNKFDLLSLEFALKWFTDP  180

Query  181  DAFQQALRDEEESGAFGGEGSTAGFGAGSGYMGSLLNSMSLMLEEFYRHLSVVGVSSMTG  240
            +  Q  L  ++                  G    L  ++   L+ FY     +  +   G
Sbjct  181  EDLQLLLELDD------------------GKYRKLNEAIREALDLFYLVPVFLPDARERG  222

Query  241  DGIDEFFQAVEEKRQE  256
            + +++    ++E  Q 
Sbjct  223  ESMEDLLTLIDEALQY  238



Lambda      K        H        a         alpha
   0.311    0.129    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00035405

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461388 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-terminu...  145     7e-42
CDD:428062 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminu...  127     4e-35


>CDD:461388 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-terminus 2.  This 
region is found in the N-terminus of Schizosaccharomyces 
pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved 
in mRNA splicing.
Length=96

 Score = 145 bits (368),  Expect = 7e-42, Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 69/105 (66%), Gaps = 10/105 (10%)

Query  597  EWTQHRKLIDTLAKAKQGLGRNAFRRTLAKEMPYFHVWFELDGGLGHVVEDEHRWPRGDL  656
            EW+QH+KLIDT  K         FRR++ K  PYFHV F LDGG  HV+EDE R+P    
Sbjct  1    EWSQHKKLIDTSNKK-------GFRRSIPKGFPYFHVEFGLDGGYAHVIEDEERFPLQ--  51

Query  657  FAREVIGGMLDLGPEVIKRQGRWNRGGD-RRVEGFKKRWRKFDWT  700
            F REVI GMLDL P V ++  R ++  + +RVE FKK W+K+DWT
Sbjct  52   FGREVIAGMLDLPPRVWRKPCRQSKEEEEQRVEAFKKAWKKYDWT  96


>CDD:428062 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminus 1.  This 
region is found in the N-terminus of Schizosaccharomyces 
pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved 
in mRNA splicing.
Length=122

 Score = 127 bits (321),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 42/127 (33%), Positives = 72/127 (57%), Gaps = 5/127 (4%)

Query  462  ISEFQKMNRILDNCPLCHHEDTNTPPIAPVISLATRTYLTLPTEPELSEGCATIVPIQHR  521
              + +++  + D+C  C            ++S+  + YL LP  P L  G   I+PIQH 
Sbjct  1    GKDHKRIKILPDSCWFCL--SNPNLEKHLIVSIGNKAYLALPKGP-LVSGHCLIIPIQHI  57

Query  522  TNLMECDDDEWEEIRNFMKSLTRMYHDQGRDVIFYENAAQPHRKRHAAMEAVPLPYSLGE  581
             + +  D++ W+EIRNF K+LT MY  QG+D +F+E A    R+ H  ++ +P+P S+G+
Sbjct  58   PSTLSLDEEVWDEIRNFRKALTLMYKSQGKDAVFFEIA--SQRRPHLHIQCIPVPKSIGK  115

Query  582  TSPAFFR  588
             +P +F+
Sbjct  116  LAPLYFK  122



Lambda      K        H        a         alpha
   0.316    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00031144

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461388 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-terminu...  145     7e-42
CDD:428062 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminu...  127     4e-35


>CDD:461388 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-terminus 2.  This 
region is found in the N-terminus of Schizosaccharomyces 
pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved 
in mRNA splicing.
Length=96

 Score = 145 bits (368),  Expect = 7e-42, Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 69/105 (66%), Gaps = 10/105 (10%)

Query  597  EWTQHRKLIDTLAKAKQGLGRNAFRRTLAKEMPYFHVWFELDGGLGHVVEDEHRWPRGDL  656
            EW+QH+KLIDT  K         FRR++ K  PYFHV F LDGG  HV+EDE R+P    
Sbjct  1    EWSQHKKLIDTSNKK-------GFRRSIPKGFPYFHVEFGLDGGYAHVIEDEERFPLQ--  51

Query  657  FAREVIGGMLDLGPEVIKRQGRWNRGGD-RRVEGFKKRWRKFDWT  700
            F REVI GMLDL P V ++  R ++  + +RVE FKK W+K+DWT
Sbjct  52   FGREVIAGMLDLPPRVWRKPCRQSKEEEEQRVEAFKKAWKKYDWT  96


>CDD:428062 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminus 1.  This 
region is found in the N-terminus of Schizosaccharomyces 
pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved 
in mRNA splicing.
Length=122

 Score = 127 bits (321),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 42/127 (33%), Positives = 72/127 (57%), Gaps = 5/127 (4%)

Query  462  ISEFQKMNRILDNCPLCHHEDTNTPPIAPVISLATRTYLTLPTEPELSEGCATIVPIQHR  521
              + +++  + D+C  C            ++S+  + YL LP  P L  G   I+PIQH 
Sbjct  1    GKDHKRIKILPDSCWFCL--SNPNLEKHLIVSIGNKAYLALPKGP-LVSGHCLIIPIQHI  57

Query  522  TNLMECDDDEWEEIRNFMKSLTRMYHDQGRDVIFYENAAQPHRKRHAAMEAVPLPYSLGE  581
             + +  D++ W+EIRNF K+LT MY  QG+D +F+E A    R+ H  ++ +P+P S+G+
Sbjct  58   PSTLSLDEEVWDEIRNFRKALTLMYKSQGKDAVFFEIA--SQRRPHLHIQCIPVPKSIGK  115

Query  582  TSPAFFR  588
             +P +F+
Sbjct  116  LAPLYFK  122



Lambda      K        H        a         alpha
   0.316    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00031145

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  196     4e-62
CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  187     4e-57


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 196 bits (500),  Expect = 4e-62, Method: Composition-based stats.
 Identities = 80/180 (44%), Positives = 114/180 (63%), Gaps = 6/180 (3%)

Query  189  MFLIIGALRNFNAGMQALREGKWRGQPLPALGHDPEGKVLGILGMGGIGRNLKKKAEAFG  248
            + L++   R      + +R G+W       LG +  GK +GI+G+G IGR + K+ +AFG
Sbjct  1    LALLLALARRIPEADRQVRAGRWASPDAL-LGRELSGKTVGIIGLGRIGRAVAKRLKAFG  59

Query  249  MRVIYHNRRQLSEELAA--GAEYVTFDELLAKSDVISLNLPLNKHTRHIISKAEFEKMKD  306
            M+VI ++R    EE     GA YV+ DELLA+SDV+SL+LPL   TRH+I+      MK 
Sbjct  60   MKVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKP  119

Query  307  GVVIVNTARGAVMDEEALVQALDSGKVYSAGLDVFEEEPKV--HPGLIRNPNVLLVPHMG  364
            G +++NTARG ++DE+AL+ AL SG++  A LDVFE EP    HP L+  PNV+L PH+ 
Sbjct  120  GAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPADHP-LLDLPNVILTPHIA  178


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 187 bits (478),  Expect = 4e-57, Method: Composition-based stats.
 Identities = 89/267 (33%), Positives = 134/267 (50%), Gaps = 10/267 (4%)

Query  134  IDEELVNALPRSVSFLAHCGAGYDQIDVHACSARNPPLRVSNVPTAVDDATADVNMFLII  193
            +  E++ A P+ +  +   G G D +D+ A + R   + V+N P    ++ A++ + LI+
Sbjct  49   VTAEVLEAAPK-LKVIGRAGVGVDNVDLDAATERG--ILVTNAPGYNTESVAELTIGLIL  105

Query  194  GALRNFNAGMQALREGKWRGQPLPALGHDPEGKVLGILGMGGIGRNLKKKAEAFGMRVIY  253
               R       ++REGKW+   L  +G +  GK LG++G GGIG  +   A+AFGM V+ 
Sbjct  106  ALARRIPEADASVREGKWKKSGL--IGLELYGKTLGVIGGGGIGGGVAAIAKAFGMGVVA  163

Query  254  HNRRQLSEELAAGAEYVTFDELLAKS-----DVISLNLPLNKHTRHIISKAEFEKMKDGV  308
            ++     E   AG   V    LL        DV+++N      T  II       +KD V
Sbjct  164  YDPYPNPERAEAGGVEVLSLLLLLLDLPESDDVLTVNPLTTMKTGVIIINEARGMLKDAV  223

Query  309  VIVNTARGAVMDEEALVQALDSGKVYSAGLDVFEEEPKVHPGLIRNPNVLLVPHMGTWTV  368
             I+N A G V+DE AL   L+ G   +A LDV EE P V   L+  PNV+L PH+G  T 
Sbjct  224  AIINAAGGGVIDEAALDALLEEGIAAAADLDVEEEPPPVDSPLLDLPNVILTPHIGGATE  283

Query  369  ETQTAMEEWAIENVRLAVETGKLKSPV  395
            E Q  + E A EN+   ++ G   + V
Sbjct  284  EAQERIAEEAAENILAFLDGGPPANAV  310



Lambda      K        H        a         alpha
   0.318    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00035406

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461388 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-terminu...  145     7e-42
CDD:428062 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminu...  127     4e-35


>CDD:461388 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-terminus 2.  This 
region is found in the N-terminus of Schizosaccharomyces 
pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved 
in mRNA splicing.
Length=96

 Score = 145 bits (368),  Expect = 7e-42, Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 69/105 (66%), Gaps = 10/105 (10%)

Query  597  EWTQHRKLIDTLAKAKQGLGRNAFRRTLAKEMPYFHVWFELDGGLGHVVEDEHRWPRGDL  656
            EW+QH+KLIDT  K         FRR++ K  PYFHV F LDGG  HV+EDE R+P    
Sbjct  1    EWSQHKKLIDTSNKK-------GFRRSIPKGFPYFHVEFGLDGGYAHVIEDEERFPLQ--  51

Query  657  FAREVIGGMLDLGPEVIKRQGRWNRGGD-RRVEGFKKRWRKFDWT  700
            F REVI GMLDL P V ++  R ++  + +RVE FKK W+K+DWT
Sbjct  52   FGREVIAGMLDLPPRVWRKPCRQSKEEEEQRVEAFKKAWKKYDWT  96


>CDD:428062 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminus 1.  This 
region is found in the N-terminus of Schizosaccharomyces 
pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved 
in mRNA splicing.
Length=122

 Score = 127 bits (321),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 42/127 (33%), Positives = 72/127 (57%), Gaps = 5/127 (4%)

Query  462  ISEFQKMNRILDNCPLCHHEDTNTPPIAPVISLATRTYLTLPTEPELSEGCATIVPIQHR  521
              + +++  + D+C  C            ++S+  + YL LP  P L  G   I+PIQH 
Sbjct  1    GKDHKRIKILPDSCWFCL--SNPNLEKHLIVSIGNKAYLALPKGP-LVSGHCLIIPIQHI  57

Query  522  TNLMECDDDEWEEIRNFMKSLTRMYHDQGRDVIFYENAAQPHRKRHAAMEAVPLPYSLGE  581
             + +  D++ W+EIRNF K+LT MY  QG+D +F+E A    R+ H  ++ +P+P S+G+
Sbjct  58   PSTLSLDEEVWDEIRNFRKALTLMYKSQGKDAVFFEIA--SQRRPHLHIQCIPVPKSIGK  115

Query  582  TSPAFFR  588
             +P +F+
Sbjct  116  LAPLYFK  122



Lambda      K        H        a         alpha
   0.316    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00031146

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461388 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-terminu...  145     7e-42
CDD:428062 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminu...  127     4e-35


>CDD:461388 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-terminus 2.  This 
region is found in the N-terminus of Schizosaccharomyces 
pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved 
in mRNA splicing.
Length=96

 Score = 145 bits (368),  Expect = 7e-42, Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 69/105 (66%), Gaps = 10/105 (10%)

Query  597  EWTQHRKLIDTLAKAKQGLGRNAFRRTLAKEMPYFHVWFELDGGLGHVVEDEHRWPRGDL  656
            EW+QH+KLIDT  K         FRR++ K  PYFHV F LDGG  HV+EDE R+P    
Sbjct  1    EWSQHKKLIDTSNKK-------GFRRSIPKGFPYFHVEFGLDGGYAHVIEDEERFPLQ--  51

Query  657  FAREVIGGMLDLGPEVIKRQGRWNRGGD-RRVEGFKKRWRKFDWT  700
            F REVI GMLDL P V ++  R ++  + +RVE FKK W+K+DWT
Sbjct  52   FGREVIAGMLDLPPRVWRKPCRQSKEEEEQRVEAFKKAWKKYDWT  96


>CDD:428062 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminus 1.  This 
region is found in the N-terminus of Schizosaccharomyces 
pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved 
in mRNA splicing.
Length=122

 Score = 127 bits (321),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 42/127 (33%), Positives = 72/127 (57%), Gaps = 5/127 (4%)

Query  462  ISEFQKMNRILDNCPLCHHEDTNTPPIAPVISLATRTYLTLPTEPELSEGCATIVPIQHR  521
              + +++  + D+C  C            ++S+  + YL LP  P L  G   I+PIQH 
Sbjct  1    GKDHKRIKILPDSCWFCL--SNPNLEKHLIVSIGNKAYLALPKGP-LVSGHCLIIPIQHI  57

Query  522  TNLMECDDDEWEEIRNFMKSLTRMYHDQGRDVIFYENAAQPHRKRHAAMEAVPLPYSLGE  581
             + +  D++ W+EIRNF K+LT MY  QG+D +F+E A    R+ H  ++ +P+P S+G+
Sbjct  58   PSTLSLDEEVWDEIRNFRKALTLMYKSQGKDAVFFEIA--SQRRPHLHIQCIPVPKSIGK  115

Query  582  TSPAFFR  588
             +P +F+
Sbjct  116  LAPLYFK  122



Lambda      K        H        a         alpha
   0.316    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00035407

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461388 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-terminu...  145     7e-42
CDD:428062 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminu...  127     4e-35


>CDD:461388 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-terminus 2.  This 
region is found in the N-terminus of Schizosaccharomyces 
pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved 
in mRNA splicing.
Length=96

 Score = 145 bits (368),  Expect = 7e-42, Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 69/105 (66%), Gaps = 10/105 (10%)

Query  597  EWTQHRKLIDTLAKAKQGLGRNAFRRTLAKEMPYFHVWFELDGGLGHVVEDEHRWPRGDL  656
            EW+QH+KLIDT  K         FRR++ K  PYFHV F LDGG  HV+EDE R+P    
Sbjct  1    EWSQHKKLIDTSNKK-------GFRRSIPKGFPYFHVEFGLDGGYAHVIEDEERFPLQ--  51

Query  657  FAREVIGGMLDLGPEVIKRQGRWNRGGD-RRVEGFKKRWRKFDWT  700
            F REVI GMLDL P V ++  R ++  + +RVE FKK W+K+DWT
Sbjct  52   FGREVIAGMLDLPPRVWRKPCRQSKEEEEQRVEAFKKAWKKYDWT  96


>CDD:428062 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminus 1.  This 
region is found in the N-terminus of Schizosaccharomyces 
pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved 
in mRNA splicing.
Length=122

 Score = 127 bits (321),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 42/127 (33%), Positives = 72/127 (57%), Gaps = 5/127 (4%)

Query  462  ISEFQKMNRILDNCPLCHHEDTNTPPIAPVISLATRTYLTLPTEPELSEGCATIVPIQHR  521
              + +++  + D+C  C            ++S+  + YL LP  P L  G   I+PIQH 
Sbjct  1    GKDHKRIKILPDSCWFCL--SNPNLEKHLIVSIGNKAYLALPKGP-LVSGHCLIIPIQHI  57

Query  522  TNLMECDDDEWEEIRNFMKSLTRMYHDQGRDVIFYENAAQPHRKRHAAMEAVPLPYSLGE  581
             + +  D++ W+EIRNF K+LT MY  QG+D +F+E A    R+ H  ++ +P+P S+G+
Sbjct  58   PSTLSLDEEVWDEIRNFRKALTLMYKSQGKDAVFFEIA--SQRRPHLHIQCIPVPKSIGK  115

Query  582  TSPAFFR  588
             +P +F+
Sbjct  116  LAPLYFK  122



Lambda      K        H        a         alpha
   0.316    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00031147

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461388 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-terminu...  148     5e-46
CDD:428062 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminu...  127     1e-37


>CDD:461388 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-terminus 2.  This 
region is found in the N-terminus of Schizosaccharomyces 
pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved 
in mRNA splicing.
Length=96

 Score = 148 bits (375),  Expect = 5e-46, Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 69/105 (66%), Gaps = 10/105 (10%)

Query  159  EWTQHRKLIDTLAKAKQGLGRNAFRRTLAKEMPYFHVWFELDGGLGHVVEDEHRWPRGDL  218
            EW+QH+KLIDT  K         FRR++ K  PYFHV F LDGG  HV+EDE R+P    
Sbjct  1    EWSQHKKLIDTSNKK-------GFRRSIPKGFPYFHVEFGLDGGYAHVIEDEERFPLQ--  51

Query  219  FAREVIGGMLDLGPEVIKRQGRWNRGGD-RRVEGFKKRWRKFDWT  262
            F REVI GMLDL P V ++  R ++  + +RVE FKK W+K+DWT
Sbjct  52   FGREVIAGMLDLPPRVWRKPCRQSKEEEEQRVEAFKKAWKKYDWT  96


>CDD:428062 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminus 1.  This 
region is found in the N-terminus of Schizosaccharomyces 
pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved 
in mRNA splicing.
Length=122

 Score = 127 bits (321),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 42/127 (33%), Positives = 72/127 (57%), Gaps = 5/127 (4%)

Query  24   ISEFQKMNRILDNCPLCHHEDTNTPPIAPVISLATRTYLTLPTEPELSEGCATIVPIQHR  83
              + +++  + D+C  C            ++S+  + YL LP  P L  G   I+PIQH 
Sbjct  1    GKDHKRIKILPDSCWFCL--SNPNLEKHLIVSIGNKAYLALPKGP-LVSGHCLIIPIQHI  57

Query  84   TNLMECDDDEWEEIRNFMKSLTRMYHDQGRDVIFYENAAQPHRKRHAAMEAVPLPYSLGE  143
             + +  D++ W+EIRNF K+LT MY  QG+D +F+E A    R+ H  ++ +P+P S+G+
Sbjct  58   PSTLSLDEEVWDEIRNFRKALTLMYKSQGKDAVFFEIA--SQRRPHLHIQCIPVPKSIGK  115

Query  144  TSPAFFR  150
             +P +F+
Sbjct  116  LAPLYFK  122



Lambda      K        H        a         alpha
   0.321    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00035408

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461388 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-terminu...  145     7e-42
CDD:428062 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminu...  127     4e-35


>CDD:461388 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-terminus 2.  This 
region is found in the N-terminus of Schizosaccharomyces 
pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved 
in mRNA splicing.
Length=96

 Score = 145 bits (368),  Expect = 7e-42, Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 69/105 (66%), Gaps = 10/105 (10%)

Query  597  EWTQHRKLIDTLAKAKQGLGRNAFRRTLAKEMPYFHVWFELDGGLGHVVEDEHRWPRGDL  656
            EW+QH+KLIDT  K         FRR++ K  PYFHV F LDGG  HV+EDE R+P    
Sbjct  1    EWSQHKKLIDTSNKK-------GFRRSIPKGFPYFHVEFGLDGGYAHVIEDEERFPLQ--  51

Query  657  FAREVIGGMLDLGPEVIKRQGRWNRGGD-RRVEGFKKRWRKFDWT  700
            F REVI GMLDL P V ++  R ++  + +RVE FKK W+K+DWT
Sbjct  52   FGREVIAGMLDLPPRVWRKPCRQSKEEEEQRVEAFKKAWKKYDWT  96


>CDD:428062 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminus 1.  This 
region is found in the N-terminus of Schizosaccharomyces 
pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved 
in mRNA splicing.
Length=122

 Score = 127 bits (321),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 42/127 (33%), Positives = 72/127 (57%), Gaps = 5/127 (4%)

Query  462  ISEFQKMNRILDNCPLCHHEDTNTPPIAPVISLATRTYLTLPTEPELSEGCATIVPIQHR  521
              + +++  + D+C  C            ++S+  + YL LP  P L  G   I+PIQH 
Sbjct  1    GKDHKRIKILPDSCWFCL--SNPNLEKHLIVSIGNKAYLALPKGP-LVSGHCLIIPIQHI  57

Query  522  TNLMECDDDEWEEIRNFMKSLTRMYHDQGRDVIFYENAAQPHRKRHAAMEAVPLPYSLGE  581
             + +  D++ W+EIRNF K+LT MY  QG+D +F+E A    R+ H  ++ +P+P S+G+
Sbjct  58   PSTLSLDEEVWDEIRNFRKALTLMYKSQGKDAVFFEIA--SQRRPHLHIQCIPVPKSIGK  115

Query  582  TSPAFFR  588
             +P +F+
Sbjct  116  LAPLYFK  122



Lambda      K        H        a         alpha
   0.316    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00031148

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  193     2e-63
CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  140     2e-41


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 193 bits (492),  Expect = 2e-63, Method: Composition-based stats.
 Identities = 80/180 (44%), Positives = 114/180 (63%), Gaps = 6/180 (3%)

Query  1    MFLIIGALRNFNAGMQALREGKWRGQPLPALGHDPEGKVLGILGMGGIGRNLKKKAEAFG  60
            + L++   R      + +R G+W       LG +  GK +GI+G+G IGR + K+ +AFG
Sbjct  1    LALLLALARRIPEADRQVRAGRWASPDAL-LGRELSGKTVGIIGLGRIGRAVAKRLKAFG  59

Query  61   MRVIYHNRRQLSEELAA--GAEYVTFDELLAKSDVISLNLPLNKHTRHIISKAEFEKMKD  118
            M+VI ++R    EE     GA YV+ DELLA+SDV+SL+LPL   TRH+I+      MK 
Sbjct  60   MKVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKP  119

Query  119  GVVIVNTARGAVMDEEALVQALDSGKVYSAGLDVFEEEPKV--HPGLIRNPNVLLVPHMG  176
            G +++NTARG ++DE+AL+ AL SG++  A LDVFE EP    HP L+  PNV+L PH+ 
Sbjct  120  GAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPADHP-LLDLPNVILTPHIA  178


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 140 bits (355),  Expect = 2e-41, Method: Composition-based stats.
 Identities = 76/212 (36%), Positives = 106/212 (50%), Gaps = 7/212 (3%)

Query  1    MFLIIGALRNFNAGMQALREGKWRGQPLPALGHDPEGKVLGILGMGGIGRNLKKKAEAFG  60
            + LI+   R       ++REGKW+   L  +G +  GK LG++G GGIG  +   A+AFG
Sbjct  101  IGLILALARRIPEADASVREGKWKKSGL--IGLELYGKTLGVIGGGGIGGGVAAIAKAFG  158

Query  61   MRVIYHNRRQLSEELAAGAEYVTFDELLAKS-----DVISLNLPLNKHTRHIISKAEFEK  115
            M V+ ++     E   AG   V    LL        DV+++N      T  II       
Sbjct  159  MGVVAYDPYPNPERAEAGGVEVLSLLLLLLDLPESDDVLTVNPLTTMKTGVIIINEARGM  218

Query  116  MKDGVVIVNTARGAVMDEEALVQALDSGKVYSAGLDVFEEEPKVHPGLIRNPNVLLVPHM  175
            +KD V I+N A G V+DE AL   L+ G   +A LDV EE P V   L+  PNV+L PH+
Sbjct  219  LKDAVAIINAAGGGVIDEAALDALLEEGIAAAADLDVEEEPPPVDSPLLDLPNVILTPHI  278

Query  176  GTWTVETQTAMEEWAIENVRLAVETGKLKSPV  207
            G  T E Q  + E A EN+   ++ G   + V
Sbjct  279  GGATEEAQERIAEEAAENILAFLDGGPPANAV  310



Lambda      K        H        a         alpha
   0.317    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00031149

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  195     2e-62
CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  186     3e-57


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 195 bits (498),  Expect = 2e-62, Method: Composition-based stats.
 Identities = 80/180 (44%), Positives = 114/180 (63%), Gaps = 6/180 (3%)

Query  126  MFLIIGALRNFNAGMQALREGKWRGQPLPALGHDPEGKVLGILGMGGIGRNLKKKAEAFG  185
            + L++   R      + +R G+W       LG +  GK +GI+G+G IGR + K+ +AFG
Sbjct  1    LALLLALARRIPEADRQVRAGRWASPDAL-LGRELSGKTVGIIGLGRIGRAVAKRLKAFG  59

Query  186  MRVIYHNRRQLSEELAA--GAEYVTFDELLAKSDVISLNLPLNKHTRHIISKAEFEKMKD  243
            M+VI ++R    EE     GA YV+ DELLA+SDV+SL+LPL   TRH+I+      MK 
Sbjct  60   MKVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKP  119

Query  244  GVVIVNTARGAVMDEEALVQALDSGKVYSAGLDVFEEEPKV--HPGLIRNPNVLLVPHMG  301
            G +++NTARG ++DE+AL+ AL SG++  A LDVFE EP    HP L+  PNV+L PH+ 
Sbjct  120  GAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPADHP-LLDLPNVILTPHIA  178


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 186 bits (474),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 89/267 (33%), Positives = 134/267 (50%), Gaps = 10/267 (4%)

Query  71   IDEELVNALPRSVSFLAHCGAGYDQIDVHACSARNPPLRVSNVPTAVDDATADVNMFLII  130
            +  E++ A P+ +  +   G G D +D+ A + R   + V+N P    ++ A++ + LI+
Sbjct  49   VTAEVLEAAPK-LKVIGRAGVGVDNVDLDAATERG--ILVTNAPGYNTESVAELTIGLIL  105

Query  131  GALRNFNAGMQALREGKWRGQPLPALGHDPEGKVLGILGMGGIGRNLKKKAEAFGMRVIY  190
               R       ++REGKW+   L  +G +  GK LG++G GGIG  +   A+AFGM V+ 
Sbjct  106  ALARRIPEADASVREGKWKKSGL--IGLELYGKTLGVIGGGGIGGGVAAIAKAFGMGVVA  163

Query  191  HNRRQLSEELAAGAEYVTFDELLAKS-----DVISLNLPLNKHTRHIISKAEFEKMKDGV  245
            ++     E   AG   V    LL        DV+++N      T  II       +KD V
Sbjct  164  YDPYPNPERAEAGGVEVLSLLLLLLDLPESDDVLTVNPLTTMKTGVIIINEARGMLKDAV  223

Query  246  VIVNTARGAVMDEEALVQALDSGKVYSAGLDVFEEEPKVHPGLIRNPNVLLVPHMGTWTV  305
             I+N A G V+DE AL   L+ G   +A LDV EE P V   L+  PNV+L PH+G  T 
Sbjct  224  AIINAAGGGVIDEAALDALLEEGIAAAADLDVEEEPPPVDSPLLDLPNVILTPHIGGATE  283

Query  306  ETQTAMEEWAIENVRLAVETGKLKSPV  332
            E Q  + E A EN+   ++ G   + V
Sbjct  284  EAQERIAEEAAENILAFLDGGPPANAV  310



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00031150

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  190     9e-63
CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  123     4e-35


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 190 bits (486),  Expect = 9e-63, Method: Composition-based stats.
 Identities = 80/180 (44%), Positives = 114/180 (63%), Gaps = 6/180 (3%)

Query  1    MFLIIGALRNFNAGMQALREGKWRGQPLPALGHDPEGKVLGILGMGGIGRNLKKKAEAFG  60
            + L++   R      + +R G+W       LG +  GK +GI+G+G IGR + K+ +AFG
Sbjct  1    LALLLALARRIPEADRQVRAGRWASPDAL-LGRELSGKTVGIIGLGRIGRAVAKRLKAFG  59

Query  61   MRVIYHNRRQLSEELAA--GAEYVTFDELLAKSDVISLNLPLNKHTRHIISKAEFEKMKD  118
            M+VI ++R    EE     GA YV+ DELLA+SDV+SL+LPL   TRH+I+      MK 
Sbjct  60   MKVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKP  119

Query  119  GVVIVNTARGAVMDEEALVQALDSGKVYSAGLDVFEEEPKV--HPGLIRNPNVLLVPHMG  176
            G +++NTARG ++DE+AL+ AL SG++  A LDVFE EP    HP L+  PNV+L PH+ 
Sbjct  120  GAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPADHP-LLDLPNVILTPHIA  178


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 123 bits (312),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 69/189 (37%), Positives = 95/189 (50%), Gaps = 7/189 (4%)

Query  1    MFLIIGALRNFNAGMQALREGKWRGQPLPALGHDPEGKVLGILGMGGIGRNLKKKAEAFG  60
            + LI+   R       ++REGKW+   L  +G +  GK LG++G GGIG  +   A+AFG
Sbjct  101  IGLILALARRIPEADASVREGKWKKSGL--IGLELYGKTLGVIGGGGIGGGVAAIAKAFG  158

Query  61   MRVIYHNRRQLSEELAAGAEYVTFDELLAKS-----DVISLNLPLNKHTRHIISKAEFEK  115
            M V+ ++     E   AG   V    LL        DV+++N      T  II       
Sbjct  159  MGVVAYDPYPNPERAEAGGVEVLSLLLLLLDLPESDDVLTVNPLTTMKTGVIIINEARGM  218

Query  116  MKDGVVIVNTARGAVMDEEALVQALDSGKVYSAGLDVFEEEPKVHPGLIRNPNVLLVPHM  175
            +KD V I+N A G V+DE AL   L+ G   +A LDV EE P V   L+  PNV+L PH+
Sbjct  219  LKDAVAIINAAGGGVIDEAALDALLEEGIAAAADLDVEEEPPPVDSPLLDLPNVILTPHI  278

Query  176  GTWTVEVRL  184
            G  T E + 
Sbjct  279  GGATEEAQE  287



Lambda      K        H        a         alpha
   0.321    0.139    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00031152

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyac...  195     1e-62
CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid...  187     2e-57


>CDD:427007 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, 
NAD binding domain.  This domain is inserted into 
the catalytic domain, the large dehydrogenase and D-lactate 
dehydrogenase families in SCOP. N-terminal portion of which 
is represented by family pfam00389.
Length=178

 Score = 195 bits (499),  Expect = 1e-62, Method: Composition-based stats.
 Identities = 80/180 (44%), Positives = 114/180 (63%), Gaps = 6/180 (3%)

Query  132  MFLIIGALRNFNAGMQALREGKWRGQPLPALGHDPEGKVLGILGMGGIGRNLKKKAEAFG  191
            + L++   R      + +R G+W       LG +  GK +GI+G+G IGR + K+ +AFG
Sbjct  1    LALLLALARRIPEADRQVRAGRWASPDAL-LGRELSGKTVGIIGLGRIGRAVAKRLKAFG  59

Query  192  MRVIYHNRRQLSEELAA--GAEYVTFDELLAKSDVISLNLPLNKHTRHIISKAEFEKMKD  249
            M+VI ++R    EE     GA YV+ DELLA+SDV+SL+LPL   TRH+I+      MK 
Sbjct  60   MKVIAYDRYPKPEEEEEELGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKP  119

Query  250  GVVIVNTARGAVMDEEALVQALDSGKVYSAGLDVFEEEPKV--HPGLIRNPNVLLVPHMG  307
            G +++NTARG ++DE+AL+ AL SG++  A LDVFE EP    HP L+  PNV+L PH+ 
Sbjct  120  GAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPADHP-LLDLPNVILTPHIA  178


>CDD:425656 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, 
catalytic domain.  This family represents the largest 
portion of the catalytic domain of 2-hydroxyacid dehydrogenases 
as the NAD binding domain is inserted within the structural 
domain.
Length=311

 Score = 187 bits (476),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 89/267 (33%), Positives = 134/267 (50%), Gaps = 10/267 (4%)

Query  77   IDEELVNALPRSVSFLAHCGAGYDQIDVHACSARNPPLRVSNVPTAVDDATADVNMFLII  136
            +  E++ A P+ +  +   G G D +D+ A + R   + V+N P    ++ A++ + LI+
Sbjct  49   VTAEVLEAAPK-LKVIGRAGVGVDNVDLDAATERG--ILVTNAPGYNTESVAELTIGLIL  105

Query  137  GALRNFNAGMQALREGKWRGQPLPALGHDPEGKVLGILGMGGIGRNLKKKAEAFGMRVIY  196
               R       ++REGKW+   L  +G +  GK LG++G GGIG  +   A+AFGM V+ 
Sbjct  106  ALARRIPEADASVREGKWKKSGL--IGLELYGKTLGVIGGGGIGGGVAAIAKAFGMGVVA  163

Query  197  HNRRQLSEELAAGAEYVTFDELLAKS-----DVISLNLPLNKHTRHIISKAEFEKMKDGV  251
            ++     E   AG   V    LL        DV+++N      T  II       +KD V
Sbjct  164  YDPYPNPERAEAGGVEVLSLLLLLLDLPESDDVLTVNPLTTMKTGVIIINEARGMLKDAV  223

Query  252  VIVNTARGAVMDEEALVQALDSGKVYSAGLDVFEEEPKVHPGLIRNPNVLLVPHMGTWTV  311
             I+N A G V+DE AL   L+ G   +A LDV EE P V   L+  PNV+L PH+G  T 
Sbjct  224  AIINAAGGGVIDEAALDALLEEGIAAAADLDVEEEPPPVDSPLLDLPNVILTPHIGGATE  283

Query  312  ETQTAMEEWAIENVRLAVETGKLKSPV  338
            E Q  + E A EN+   ++ G   + V
Sbjct  284  EAQERIAEEAAENILAFLDGGPPANAV  310



Lambda      K        H        a         alpha
   0.318    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00035409

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.123    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00031154

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.123    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00031153

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.121    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00031155

Length=93
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  75.4    8e-19


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 75.4 bits (186),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 3/78 (4%)

Query  6    VGTPDYIAPEIFNGQGYTYLCDWWSVGAIMFECLVGWPPFCAEDTTDTYRKIVNWRECLY  65
            VGTP Y+APE+  G  Y    D WS+G I++E L G PPF   +  + Y  I+   +   
Sbjct  121  VGTPWYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII--DQPYA  178

Query  66   FPEEL-TLSRDSESLIRR  82
            FPE    LS +++ L+++
Sbjct  179  FPELPSNLSEEAKDLLKK  196



Lambda      K        H        a         alpha
   0.325    0.141    0.493    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00035410

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463328 pfam11711, Tim54, Inner membrane protein import comple...  571     0.0  


>CDD:463328 pfam11711, Tim54, Inner membrane protein import complex subunit 
Tim54.  Mitochondrial function depends on the import of hundreds 
of different proteins synthesized in the cytosol. Protein 
import is a multi-step pathway which includes the binding 
of precursor proteins to surface receptors, translocation 
of the precursor across one or both mitochondrial membranes, 
and folding and assembly of the imported protein inside the 
mitochondrion. Most precursor proteins carry amino-terminal 
targeting signals, called pre-sequences, and are imported 
into mitochondria via import complexes located in both the 
outer and the inner membrane (IM). The IM complex, TIM, is made 
up of at least two proteins which mediate translocation 
of proteins into the matrix by removing their signal peptide 
and another pair of proteins, Tim54 and Tim22, that insert 
the polytopic proteins, that carry internal targetting information, 
into the inner membrane.
Length=374

 Score = 571 bits (1474),  Expect = 0.0, Method: Composition-based stats.
 Identities = 220/409 (54%), Positives = 280/409 (68%), Gaps = 49/409 (12%)

Query  26   NPAFRMLGLPNFRFKLPSRNWMIFFTITGSLTAAIVYDRRERRRVQQKWCDLVAHLSKET  85
            NPA RM+GLPN R KLPSRNWMIF+T+TGS T AI+YD+RE++R+++KWCDLVAHL+KE 
Sbjct  1    NPALRMMGLPNLRLKLPSRNWMIFWTVTGSFTGAIIYDKREKKRIRKKWCDLVAHLAKEP  60

Query  86   LPIEQTRRKLTIFLSAPPGDGLRIAREHFKEYVKPILVAAALDYTVIEGRREGDVRAALA  145
            LP  Q  RKLT+FL+ PPGDGLR+AR+HF+EYVKPILVAA LDY V+EGRR+GD+RAA+A
Sbjct  61   LPTNQLPRKLTVFLAPPPGDGLRVARDHFREYVKPILVAAGLDYEVVEGRRQGDIRAAVA  120

Query  146  ERIRKHRRKAGEPSS-VVEEMSNEDI-----IADARQKIGVVEEPGPKGDLVIGRHTWKE  199
            ERIR+ RRKAGEP S   EE   E+      + D R  +G+ +  G  GD+VIGRH WKE
Sbjct  121  ERIRRLRRKAGEPESDESEEPEEEEAKKFKDLEDLRDVLGIPDPEGAGGDIVIGRHAWKE  180

Query  200  YIRGLHEGWLGPLDPPSPP--DAPVKGPSVPVEGSETPADGTPAEENTEKKEEAEKKDDK  257
            YIRGLHEGWLGPLDPP  P  +   +      E  ET  +     +  E +EE EK++++
Sbjct  181  YIRGLHEGWLGPLDPPPEPEVEEIPEPEEAESEEDETEPETPAPTDAEESEEEEEKEEEE  240

Query  258  -----PAKPSGPTPAYVSPAEYSSRSLPPTLPQSLDSSVPIPFPHLLGFLNTPIRLYRYL  312
                 P KP  P P Y+SPA+Y+S  LPP +P     S+ IPFPHLLGFLNTPIR+YR+L
Sbjct  241  EEEEKPKKPPQPKP-YISPADYASAELPPEIPIEFQPSLVIPFPHLLGFLNTPIRIYRFL  299

Query  313  SRRHLADEIGREVAGLVLASSSRPYHDGSFSSDSELSGAMVDAGASTLSSPDDMMPSSSA  372
            +RR+LAD+IGREVA +VLA + RPY + +                               
Sbjct  300  TRRYLADDIGREVAAVVLA-AIRPYEEKT-------------------------------  327

Query  373  KYEQQTVLEKEESEWHKSVHKRDEENPDKEREWIDDIVLDPRIASRMQR  421
             YEQQT+L++EE +W KS  K+ +E   KE EW+ ++VLDPRIASRM+R
Sbjct  328  -YEQQTLLKEEEKDWPKSWVKQGKEP--KESEWVQELVLDPRIASRMRR  373



Lambda      K        H        a         alpha
   0.312    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00035411

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463328 pfam11711, Tim54, Inner membrane protein import comple...  571     0.0  


>CDD:463328 pfam11711, Tim54, Inner membrane protein import complex subunit 
Tim54.  Mitochondrial function depends on the import of hundreds 
of different proteins synthesized in the cytosol. Protein 
import is a multi-step pathway which includes the binding 
of precursor proteins to surface receptors, translocation 
of the precursor across one or both mitochondrial membranes, 
and folding and assembly of the imported protein inside the 
mitochondrion. Most precursor proteins carry amino-terminal 
targeting signals, called pre-sequences, and are imported 
into mitochondria via import complexes located in both the 
outer and the inner membrane (IM). The IM complex, TIM, is made 
up of at least two proteins which mediate translocation 
of proteins into the matrix by removing their signal peptide 
and another pair of proteins, Tim54 and Tim22, that insert 
the polytopic proteins, that carry internal targetting information, 
into the inner membrane.
Length=374

 Score = 571 bits (1474),  Expect = 0.0, Method: Composition-based stats.
 Identities = 220/409 (54%), Positives = 280/409 (68%), Gaps = 49/409 (12%)

Query  26   NPAFRMLGLPNFRFKLPSRNWMIFFTITGSLTAAIVYDRRERRRVQQKWCDLVAHLSKET  85
            NPA RM+GLPN R KLPSRNWMIF+T+TGS T AI+YD+RE++R+++KWCDLVAHL+KE 
Sbjct  1    NPALRMMGLPNLRLKLPSRNWMIFWTVTGSFTGAIIYDKREKKRIRKKWCDLVAHLAKEP  60

Query  86   LPIEQTRRKLTIFLSAPPGDGLRIAREHFKEYVKPILVAAALDYTVIEGRREGDVRAALA  145
            LP  Q  RKLT+FL+ PPGDGLR+AR+HF+EYVKPILVAA LDY V+EGRR+GD+RAA+A
Sbjct  61   LPTNQLPRKLTVFLAPPPGDGLRVARDHFREYVKPILVAAGLDYEVVEGRRQGDIRAAVA  120

Query  146  ERIRKHRRKAGEPSS-VVEEMSNEDI-----IADARQKIGVVEEPGPKGDLVIGRHTWKE  199
            ERIR+ RRKAGEP S   EE   E+      + D R  +G+ +  G  GD+VIGRH WKE
Sbjct  121  ERIRRLRRKAGEPESDESEEPEEEEAKKFKDLEDLRDVLGIPDPEGAGGDIVIGRHAWKE  180

Query  200  YIRGLHEGWLGPLDPPSPP--DAPVKGPSVPVEGSETPADGTPAEENTEKKEEAEKKDDK  257
            YIRGLHEGWLGPLDPP  P  +   +      E  ET  +     +  E +EE EK++++
Sbjct  181  YIRGLHEGWLGPLDPPPEPEVEEIPEPEEAESEEDETEPETPAPTDAEESEEEEEKEEEE  240

Query  258  -----PAKPSGPTPAYVSPAEYSSRSLPPTLPQSLDSSVPIPFPHLLGFLNTPIRLYRYL  312
                 P KP  P P Y+SPA+Y+S  LPP +P     S+ IPFPHLLGFLNTPIR+YR+L
Sbjct  241  EEEEKPKKPPQPKP-YISPADYASAELPPEIPIEFQPSLVIPFPHLLGFLNTPIRIYRFL  299

Query  313  SRRHLADEIGREVAGLVLASSSRPYHDGSFSSDSELSGAMVDAGASTLSSPDDMMPSSSA  372
            +RR+LAD+IGREVA +VLA + RPY + +                               
Sbjct  300  TRRYLADDIGREVAAVVLA-AIRPYEEKT-------------------------------  327

Query  373  KYEQQTVLEKEESEWHKSVHKRDEENPDKEREWIDDIVLDPRIASRMQR  421
             YEQQT+L++EE +W KS  K+ +E   KE EW+ ++VLDPRIASRM+R
Sbjct  328  -YEQQTLLKEEEKDWPKSWVKQGKEP--KESEWVQELVLDPRIASRMRR  373



Lambda      K        H        a         alpha
   0.312    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00031158

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463328 pfam11711, Tim54, Inner membrane protein import comple...  571     0.0  


>CDD:463328 pfam11711, Tim54, Inner membrane protein import complex subunit 
Tim54.  Mitochondrial function depends on the import of hundreds 
of different proteins synthesized in the cytosol. Protein 
import is a multi-step pathway which includes the binding 
of precursor proteins to surface receptors, translocation 
of the precursor across one or both mitochondrial membranes, 
and folding and assembly of the imported protein inside the 
mitochondrion. Most precursor proteins carry amino-terminal 
targeting signals, called pre-sequences, and are imported 
into mitochondria via import complexes located in both the 
outer and the inner membrane (IM). The IM complex, TIM, is made 
up of at least two proteins which mediate translocation 
of proteins into the matrix by removing their signal peptide 
and another pair of proteins, Tim54 and Tim22, that insert 
the polytopic proteins, that carry internal targetting information, 
into the inner membrane.
Length=374

 Score = 571 bits (1474),  Expect = 0.0, Method: Composition-based stats.
 Identities = 220/409 (54%), Positives = 280/409 (68%), Gaps = 49/409 (12%)

Query  26   NPAFRMLGLPNFRFKLPSRNWMIFFTITGSLTAAIVYDRRERRRVQQKWCDLVAHLSKET  85
            NPA RM+GLPN R KLPSRNWMIF+T+TGS T AI+YD+RE++R+++KWCDLVAHL+KE 
Sbjct  1    NPALRMMGLPNLRLKLPSRNWMIFWTVTGSFTGAIIYDKREKKRIRKKWCDLVAHLAKEP  60

Query  86   LPIEQTRRKLTIFLSAPPGDGLRIAREHFKEYVKPILVAAALDYTVIEGRREGDVRAALA  145
            LP  Q  RKLT+FL+ PPGDGLR+AR+HF+EYVKPILVAA LDY V+EGRR+GD+RAA+A
Sbjct  61   LPTNQLPRKLTVFLAPPPGDGLRVARDHFREYVKPILVAAGLDYEVVEGRRQGDIRAAVA  120

Query  146  ERIRKHRRKAGEPSS-VVEEMSNEDI-----IADARQKIGVVEEPGPKGDLVIGRHTWKE  199
            ERIR+ RRKAGEP S   EE   E+      + D R  +G+ +  G  GD+VIGRH WKE
Sbjct  121  ERIRRLRRKAGEPESDESEEPEEEEAKKFKDLEDLRDVLGIPDPEGAGGDIVIGRHAWKE  180

Query  200  YIRGLHEGWLGPLDPPSPP--DAPVKGPSVPVEGSETPADGTPAEENTEKKEEAEKKDDK  257
            YIRGLHEGWLGPLDPP  P  +   +      E  ET  +     +  E +EE EK++++
Sbjct  181  YIRGLHEGWLGPLDPPPEPEVEEIPEPEEAESEEDETEPETPAPTDAEESEEEEEKEEEE  240

Query  258  -----PAKPSGPTPAYVSPAEYSSRSLPPTLPQSLDSSVPIPFPHLLGFLNTPIRLYRYL  312
                 P KP  P P Y+SPA+Y+S  LPP +P     S+ IPFPHLLGFLNTPIR+YR+L
Sbjct  241  EEEEKPKKPPQPKP-YISPADYASAELPPEIPIEFQPSLVIPFPHLLGFLNTPIRIYRFL  299

Query  313  SRRHLADEIGREVAGLVLASSSRPYHDGSFSSDSELSGAMVDAGASTLSSPDDMMPSSSA  372
            +RR+LAD+IGREVA +VLA + RPY + +                               
Sbjct  300  TRRYLADDIGREVAAVVLA-AIRPYEEKT-------------------------------  327

Query  373  KYEQQTVLEKEESEWHKSVHKRDEENPDKEREWIDDIVLDPRIASRMQR  421
             YEQQT+L++EE +W KS  K+ +E   KE EW+ ++VLDPRIASRM+R
Sbjct  328  -YEQQTLLKEEEKDWPKSWVKQGKEP--KESEWVQELVLDPRIASRMRR  373



Lambda      K        H        a         alpha
   0.312    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0791    0.140     1.90     42.6     43.6 

Effective search space used: 596542004


Query= TCONS_00031159

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.126    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00031160

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460082 pfam01149, Fapy_DNA_glyco, Formamidopyrimidine-DNA gly...  142     2e-44


>CDD:460082 pfam01149, Fapy_DNA_glyco, Formamidopyrimidine-DNA glycosylase 
N-terminal domain.  Formamidopyrimidine-DNA glycosylase (Fpg) 
is a DNA repair enzyme that excises oxidized purines from 
damaged DNA. This family is the N-terminal domain contains 
eight beta-strands, forming a beta-sandwich with two alpha-helices 
parallel to its edges.
Length=116

 Score = 142 bits (360),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 50/134 (37%), Positives = 67/134 (50%), Gaps = 18/134 (13%)

Query  1    MPELAEVSRIVHFINQHLVGKTLTKVSAQNDDIVYGKVGTSASEFQKAMEGKKVVSAGQQ  60
            MPEL EV  +   + +HLVGKT+  V   +D  + G    S  EF  A+ G+KV S G++
Sbjct  1    MPELPEVETVRRGLRRHLVGKTIASVEVLDDKNLRGP---SPEEFAAALTGRKVTSVGRR  57

Query  61   GKYFWLIMNEPPHAVMHFGMAGWLKIRDADTYYYRVEKPEDKTWPPKYWKFLLETDGDPK  120
            GKY  L ++   H V+H GM GWL I+  +             WPPK+    LE   D  
Sbjct  58   GKYLLLELDSGGHLVVHLGMTGWLLIKTEE-------------WPPKHDHVRLEL--DDG  102

Query  121  TEAAFVDFRRLSRI  134
             E  F D RR  R+
Sbjct  103  RELRFTDPRRFGRV  116



Lambda      K        H        a         alpha
   0.318    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00035412

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397172 pfam02906, Fe_hyd_lg_C, Iron only hydrogenase large su...  185     1e-54


>CDD:397172 pfam02906, Fe_hyd_lg_C, Iron only hydrogenase large subunit, 
C-terminal domain.  
Length=277

 Score = 185 bits (472),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 91/360 (25%), Positives = 140/360 (39%), Gaps = 86/360 (24%)

Query  116  RIFVASVSPQVRASLAATYGITEREAKYMIDQFLMGPHGLRAGGKHGNGFTWVVDTNVMR  175
            +  VA ++P VR +    +G+          + +     LR       GF +V DT    
Sbjct  1    KKVVAQIAPAVRGAFGEEFGL---PPTVTTGKLV---AALRK-----LGFDYVFDTAFGA  49

Query  176  EAVLALTADEVTSSLLSTGSGSLPKSPILSSACPGWICYAEKTHPFILPHLSRLKSPQAL  235
            +  +   A E    L         K P+ +S CPGW+ Y EK +P +LP+LS  KSP  +
Sbjct  50   DLTIMEEATEFLERLEKGK-----KLPMFTSCCPGWVKYVEKYYPELLPNLSTCKSPMQM  104

Query  236  SGTFLKSVLSKALGVPPSQIWHLAIMPCFDKKLEASREELTDIAWASTFTQSQTTPVRDV  295
             G  +K+  ++ L     +I+ ++IMPC  KK EA+R E+                 RDV
Sbjct  105  FGALIKTYYAEDL-----KIYVVSIMPCTAKKFEAARPEMKGD--------------RDV  145

Query  296  DCVITTRELLTLATARGLSLPNLPLKPLPASCLTPFPDQALESFLFSKSSSGQTVESGTS  355
            D V+TTREL  +    G+                   D+  ++ L    SSG     G +
Sbjct  146  DAVLTTRELAAMIKEAGI-------------DFAKLEDEEFDNPLG--ESSGAGRIFGVT  190

Query  356  GGYLHHVLQIFQA---RNPGSKIVTQRGRNADVVEYVLMSSGDEPLFRAARYYGFRNIQN  412
            GG +   L+             I  +  R  + ++   +  G     + A   G +N + 
Sbjct  191  GGVMEAALRTAYELLTGKELPAIEFKEVRGLEGIKEATVEIGGT-TVKVAVVSGLKNARK  249

Query  413  LVRKLKPARVSRLPGAKPQAVSSSANRRQPMSRNAAPAGTGADYAYVEVMACPGGCTNGG  472
            L+ K+K                               AG    Y ++EVMACPGGC  GG
Sbjct  250  LLEKIK-------------------------------AGE-LKYHFIEVMACPGGCIGGG  277



Lambda      K        H        a         alpha
   0.314    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 754686140


Query= TCONS_00031162

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397172 pfam02906, Fe_hyd_lg_C, Iron only hydrogenase large su...  185     1e-54


>CDD:397172 pfam02906, Fe_hyd_lg_C, Iron only hydrogenase large subunit, 
C-terminal domain.  
Length=277

 Score = 185 bits (472),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 91/360 (25%), Positives = 140/360 (39%), Gaps = 86/360 (24%)

Query  116  RIFVASVSPQVRASLAATYGITEREAKYMIDQFLMGPHGLRAGGKHGNGFTWVVDTNVMR  175
            +  VA ++P VR +    +G+          + +     LR       GF +V DT    
Sbjct  1    KKVVAQIAPAVRGAFGEEFGL---PPTVTTGKLV---AALRK-----LGFDYVFDTAFGA  49

Query  176  EAVLALTADEVTSSLLSTGSGSLPKSPILSSACPGWICYAEKTHPFILPHLSRLKSPQAL  235
            +  +   A E    L         K P+ +S CPGW+ Y EK +P +LP+LS  KSP  +
Sbjct  50   DLTIMEEATEFLERLEKGK-----KLPMFTSCCPGWVKYVEKYYPELLPNLSTCKSPMQM  104

Query  236  SGTFLKSVLSKALGVPPSQIWHLAIMPCFDKKLEASREELTDIAWASTFTQSQTTPVRDV  295
             G  +K+  ++ L     +I+ ++IMPC  KK EA+R E+                 RDV
Sbjct  105  FGALIKTYYAEDL-----KIYVVSIMPCTAKKFEAARPEMKGD--------------RDV  145

Query  296  DCVITTRELLTLATARGLSLPNLPLKPLPASCLTPFPDQALESFLFSKSSSGQTVESGTS  355
            D V+TTREL  +    G+                   D+  ++ L    SSG     G +
Sbjct  146  DAVLTTRELAAMIKEAGI-------------DFAKLEDEEFDNPLG--ESSGAGRIFGVT  190

Query  356  GGYLHHVLQIFQA---RNPGSKIVTQRGRNADVVEYVLMSSGDEPLFRAARYYGFRNIQN  412
            GG +   L+             I  +  R  + ++   +  G     + A   G +N + 
Sbjct  191  GGVMEAALRTAYELLTGKELPAIEFKEVRGLEGIKEATVEIGGT-TVKVAVVSGLKNARK  249

Query  413  LVRKLKPARVSRLPGAKPQAVSSSANRRQPMSRNAAPAGTGADYAYVEVMACPGGCTNGG  472
            L+ K+K                               AG    Y ++EVMACPGGC  GG
Sbjct  250  LLEKIK-------------------------------AGE-LKYHFIEVMACPGGCIGGG  277



Lambda      K        H        a         alpha
   0.314    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 754686140


Query= TCONS_00035413

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397172 pfam02906, Fe_hyd_lg_C, Iron only hydrogenase large su...  185     1e-54


>CDD:397172 pfam02906, Fe_hyd_lg_C, Iron only hydrogenase large subunit, 
C-terminal domain.  
Length=277

 Score = 185 bits (472),  Expect = 1e-54, Method: Composition-based stats.
 Identities = 91/360 (25%), Positives = 140/360 (39%), Gaps = 86/360 (24%)

Query  116  RIFVASVSPQVRASLAATYGITEREAKYMIDQFLMGPHGLRAGGKHGNGFTWVVDTNVMR  175
            +  VA ++P VR +    +G+          + +     LR       GF +V DT    
Sbjct  1    KKVVAQIAPAVRGAFGEEFGL---PPTVTTGKLV---AALRK-----LGFDYVFDTAFGA  49

Query  176  EAVLALTADEVTSSLLSTGSGSLPKSPILSSACPGWICYAEKTHPFILPHLSRLKSPQAL  235
            +  +   A E    L         K P+ +S CPGW+ Y EK +P +LP+LS  KSP  +
Sbjct  50   DLTIMEEATEFLERLEKGK-----KLPMFTSCCPGWVKYVEKYYPELLPNLSTCKSPMQM  104

Query  236  SGTFLKSVLSKALGVPPSQIWHLAIMPCFDKKLEASREELTDIAWASTFTQSQTTPVRDV  295
             G  +K+  ++ L     +I+ ++IMPC  KK EA+R E+                 RDV
Sbjct  105  FGALIKTYYAEDL-----KIYVVSIMPCTAKKFEAARPEMKGD--------------RDV  145

Query  296  DCVITTRELLTLATARGLSLPNLPLKPLPASCLTPFPDQALESFLFSKSSSGQTVESGTS  355
            D V+TTREL  +    G+                   D+  ++ L    SSG     G +
Sbjct  146  DAVLTTRELAAMIKEAGI-------------DFAKLEDEEFDNPLG--ESSGAGRIFGVT  190

Query  356  GGYLHHVLQIFQA---RNPGSKIVTQRGRNADVVEYVLMSSGDEPLFRAARYYGFRNIQN  412
            GG +   L+             I  +  R  + ++   +  G     + A   G +N + 
Sbjct  191  GGVMEAALRTAYELLTGKELPAIEFKEVRGLEGIKEATVEIGGT-TVKVAVVSGLKNARK  249

Query  413  LVRKLKPARVSRLPGAKPQAVSSSANRRQPMSRNAAPAGTGADYAYVEVMACPGGCTNGG  472
            L+ K+K                               AG    Y ++EVMACPGGC  GG
Sbjct  250  LLEKIK-------------------------------AGE-LKYHFIEVMACPGGCIGGG  277



Lambda      K        H        a         alpha
   0.314    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 754686140


Query= TCONS_00031163

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397172 pfam02906, Fe_hyd_lg_C, Iron only hydrogenase large su...  173     2e-51


>CDD:397172 pfam02906, Fe_hyd_lg_C, Iron only hydrogenase large subunit, 
C-terminal domain.  
Length=277

 Score = 173 bits (441),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 83/312 (27%), Positives = 124/312 (40%), Gaps = 75/312 (24%)

Query  21   GFTWVVDTNVMREAVLALTADEVTSSLLSTGSGSLPKSPILSSACPGWICYAEKTHPFIL  80
            GF +V DT    +  +   A E    L         K P+ +S CPGW+ Y EK +P +L
Sbjct  38   GFDYVFDTAFGADLTIMEEATEFLERLEKGK-----KLPMFTSCCPGWVKYVEKYYPELL  92

Query  81   PHLSRLKSPQALSGTFLKSVLSKALGVPPSQIWHLAIMPCFDKKLEASREELTDIAWAST  140
            P+LS  KSP  + G  +K+  ++ L     +I+ ++IMPC  KK EA+R E+        
Sbjct  93   PNLSTCKSPMQMFGALIKTYYAEDL-----KIYVVSIMPCTAKKFEAARPEMKGD-----  142

Query  141  FTQSQTTPVRDVDCVITTRELLTLATARGLSLPNLPLKPLPASCLTPFPDQALESFLFSK  200
                     RDVD V+TTREL  +    G+                   D+  ++ L   
Sbjct  143  ---------RDVDAVLTTRELAAMIKEAGI-------------DFAKLEDEEFDNPLG--  178

Query  201  SSSGQTVESGTSGGYLHHVLQIFQA---RNPGSKIVTQRGRNADVVEYVLMSSGDEPLFR  257
             SSG     G +GG +   L+             I  +  R  + ++   +  G     +
Sbjct  179  ESSGAGRIFGVTGGVMEAALRTAYELLTGKELPAIEFKEVRGLEGIKEATVEIGGT-TVK  237

Query  258  AARYYGFRNIQNLVRKLKPARVSRLPGAKPQAVSSSANRRQPMSRNAAPAGTGADYAYVE  317
             A   G +N + L+ K+K                               AG    Y ++E
Sbjct  238  VAVVSGLKNARKLLEKIK-------------------------------AGE-LKYHFIE  265

Query  318  VMACPGGCTNGG  329
            VMACPGGC  GG
Sbjct  266  VMACPGGCIGGG  277



Lambda      K        H        a         alpha
   0.315    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 558268256


Query= TCONS_00031164

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459860 pfam00591, Glycos_transf_3, Glycosyl transferase famil...  169     3e-52


>CDD:459860 pfam00591, Glycos_transf_3, Glycosyl transferase family, a/b 
domain.  This family includes anthranilate phosphoribosyltransferase 
(TrpD), thymidine phosphorylase. All these proteins 
can transfer a phosphorylated ribose substrate.
Length=253

 Score = 169 bits (431),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 94/278 (34%), Positives = 130/278 (47%), Gaps = 60/278 (22%)

Query  2    MAKHGNRAQTSFSGSADVLNAISPVPPKIS-AVTAENLAQVYEATSYAFLFAPNFHPGMM  60
            +AKHGNR+ +S SGSADVL A+      I+  +T E + ++ +     FLFAPN+HP M 
Sbjct  35   VAKHGNRSVSSKSGSADVLEALG-----INLDLTPEQVRKLLDEVGVGFLFAPNYHPAMK  89

Query  61   YANPVRRGLGLRTIFNLMGPLANPVDWALEARVVGVAYQSLGPVFAEALRSSGVTKALVV  120
            +  PVRR LG+RT+FNL+GPL NP    ++ +V+GV  + L    AE L+  G  +A VV
Sbjct  90   HVAPVRRELGIRTVFNLLGPLINPA--RVKRQVLGVYSKELAEGLAEVLKDLGRERAAVV  147

Query  121  CGAEDLDEISCAGPTNCWKLTGYPNPDYDGPDEDCSCDEDENIPRTLVKIETFQLHPSDF  180
             G   LDE S  G T   +L        DG                  +I  + L P DF
Sbjct  148  HGD-GLDEASLLGKTTVAELK-------DG------------------EITEYTLTPEDF  181

Query  181  GLPAHPLSAVYGRKMPKENAAKIMSILRNELPPDDPILTFVLINVAALLVISGICEADTS  240
            GL    L A+ G   PKENA  +  +L             V +N  A L ++G  ++   
Sbjct  182  GLGRATLEALEGGS-PKENADILKGVLGG--KGSAAHRDLVALNAGAALYLAGKADS---  235

Query  241  NMGPGDDGKVITERGPGGGRWKEGVRRARWAVESGSAL  278
                                 KEGV +A   ++SG AL
Sbjct  236  --------------------LKEGVAKALEVIDSGKAL  253



Lambda      K        H        a         alpha
   0.318    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00031165

Length=76
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427393 pfam03604, DNA_RNApol_7kD, DNA directed RNA polymerase...  59.2    1e-14


>CDD:427393 pfam03604, DNA_RNApol_7kD, DNA directed RNA polymerase, 7 kDa 
subunit.  
Length=32

 Score = 59.2 bits (144),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 29/32 (91%), Gaps = 0/32 (0%)

Query  34  YLCGECNARVSLKRGDQIRCKDCGHRVLYKER  65
           Y+CGEC A VSLKRGD IRCK+CGHR+LYK+R
Sbjct  1   YICGECGAEVSLKRGDPIRCKECGHRILYKKR  32



Lambda      K        H        a         alpha
   0.319    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00031166

Length=417


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00031167

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. Thi...  60.3    1e-12
CDD:460710 pfam02817, E3_binding, e3 binding domain. This family ...  57.7    4e-12


>CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme.  This family 
covers two Prosite entries, the conserved lysine residue 
binds biotin in one group and lipoic acid in the other. Note 
that the HMM does not currently recognize the Glycine cleavage 
system H proteins.
Length=73

 Score = 60.3 bits (147),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (53%), Gaps = 1/68 (1%)

Query  54   DVGEGITEVQIIQWYVEEGAHIEEWKPLCQYQSDKAVDDITSRYEGVVKKLHFQADDTVP  113
             +GE + E  +++W V+ G  ++  +PL + ++ K   +I +   GVVK++     DTV 
Sbjct  7    MIGESVREG-VVEWLVKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPEGDTVE  65

Query  114  TGMALCDI  121
             G  L  I
Sbjct  66   VGDPLAKI  73


>CDD:460710 pfam02817, E3_binding, e3 binding domain.  This family represents 
a small domain of the E2 subunit of 2-oxo-acid dehydrogenases 
responsible for the binding of the E3 subunit.
Length=36

 Score = 57.7 bits (141),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 19/34 (56%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  182  LATPAVRGLLKTYNVDILDVKGTGKDGRVLKEDV  215
            LA+PA R L +   +D+ DVKGTG  GR+ KEDV
Sbjct  2    LASPAARKLARELGIDLSDVKGTGPGGRITKEDV  35



Lambda      K        H        a         alpha
   0.315    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00035414

Length=186
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. Thi...  59.5    5e-13


>CDD:395290 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme.  This family 
covers two Prosite entries, the conserved lysine residue 
binds biotin in one group and lipoic acid in the other. Note 
that the HMM does not currently recognize the Glycine cleavage 
system H proteins.
Length=73

 Score = 59.5 bits (145),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (53%), Gaps = 1/68 (1%)

Query  54   DVGEGITEVQIIQWYVEEGAHIEEWKPLCQYQSDKAVDDITSRYEGVVKKLHFQADDTVP  113
             +GE + E  +++W V+ G  ++  +PL + ++ K   +I +   GVVK++     DTV 
Sbjct  7    MIGESVREG-VVEWLVKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPEGDTVE  65

Query  114  TGMALCDI  121
             G  L  I
Sbjct  66   VGDPLAKI  73



Lambda      K        H        a         alpha
   0.314    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00031168

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425518 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyl...  273     2e-92
CDD:460710 pfam02817, E3_binding, e3 binding domain. This family ...  56.2    2e-11


>CDD:425518 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase 
(catalytic domain).  These proteins contain one to three 
copies of a lipoyl binding domain followed by the catalytic 
domain.
Length=212

 Score = 273 bits (701),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 103/216 (48%), Positives = 148/216 (69%), Gaps = 6/216 (3%)

Query  140  MTRSL-TIPHFLYADELKINDITALRKKLASDPKDPK-KVTFLPFVIKAVSLALNEYPLL  197
            MT S  TIPHF   DE+ + ++ ALR++L  D  D + K+TFLPF++KAV+LAL ++P L
Sbjct  1    MTESKQTIPHFTLTDEVDVTELLALREELKEDAADEETKLTFLPFLVKAVALALKKFPEL  60

Query  198  NAKVDLSIPEKPKLIMRPKHNIGVALDTPQGLIVPNIKDVANRTIMEIAAEIKRLSALGK  257
            NA  D    E+ +++ +   NIG+A+ TP+GLIVP I++   ++I+EIA EIK L+   +
Sbjct  61   NASWD---GEEGEIVYKKYVNIGIAVATPRGLIVPVIRNADRKSILEIAKEIKDLAERAR  117

Query  258  EGKLTPADLSGGTITVSNIGNIGGTYVGPVIVPTEVAILGVGKSRTVPVFDDAGQVTKGE  317
            EGKL P DL GGT T+SN+G  G T+  P+I P +VAILGVG+ R  PV  D G++   +
Sbjct  118  EGKLKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGRIRKRPVVVD-GEIVVRK  176

Query  318  LVNFSWSADHRVVDGATMARMANKVREFIESPELML  353
            ++  S S DHRV+DGA  AR  N ++E +E+PEL+L
Sbjct  177  VMPLSLSFDHRVIDGAEAARFLNTLKELLENPELLL  212


>CDD:460710 pfam02817, E3_binding, e3 binding domain.  This family represents 
a small domain of the E2 subunit of 2-oxo-acid dehydrogenases 
responsible for the binding of the E3 subunit.
Length=36

 Score = 56.2 bits (137),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 19/34 (56%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  67  LATPAVRGLLKTYNVDILDVKGTGKDGRVLKEDV  100
           LA+PA R L +   +D+ DVKGTG  GR+ KEDV
Sbjct  2   LASPAARKLARELGIDLSDVKGTGPGGRITKEDV  35



Lambda      K        H        a         alpha
   0.314    0.132    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00031169

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425518 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyl...  276     3e-92
CDD:460710 pfam02817, E3_binding, e3 binding domain. This family ...  56.9    2e-11


>CDD:425518 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase 
(catalytic domain).  These proteins contain one to three 
copies of a lipoyl binding domain followed by the catalytic 
domain.
Length=212

 Score = 276 bits (709),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 103/216 (48%), Positives = 148/216 (69%), Gaps = 6/216 (3%)

Query  243  MTRSL-TIPHFLYADELKINDITALRKKLASDPKDPK-KVTFLPFVIKAVSLALNEYPLL  300
            MT S  TIPHF   DE+ + ++ ALR++L  D  D + K+TFLPF++KAV+LAL ++P L
Sbjct  1    MTESKQTIPHFTLTDEVDVTELLALREELKEDAADEETKLTFLPFLVKAVALALKKFPEL  60

Query  301  NAKVDLSIPEKPKLIMRPKHNIGVALDTPQGLIVPNIKDVANRTIMEIAAEIKRLSALGK  360
            NA  D    E+ +++ +   NIG+A+ TP+GLIVP I++   ++I+EIA EIK L+   +
Sbjct  61   NASWD---GEEGEIVYKKYVNIGIAVATPRGLIVPVIRNADRKSILEIAKEIKDLAERAR  117

Query  361  EGKLTPADLSGGTITVSNIGNIGGTYVGPVIVPTEVAILGVGKSRTVPVFDDAGQVTKGE  420
            EGKL P DL GGT T+SN+G  G T+  P+I P +VAILGVG+ R  PV  D G++   +
Sbjct  118  EGKLKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGRIRKRPVVVD-GEIVVRK  176

Query  421  LVNFSWSADHRVVDGATMARMANKVREFIESPELML  456
            ++  S S DHRV+DGA  AR  N ++E +E+PEL+L
Sbjct  177  VMPLSLSFDHRVIDGAEAARFLNTLKELLENPELLL  212


>CDD:460710 pfam02817, E3_binding, e3 binding domain.  This family represents 
a small domain of the E2 subunit of 2-oxo-acid dehydrogenases 
responsible for the binding of the E3 subunit.
Length=36

 Score = 56.9 bits (139),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 19/34 (56%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  170  LATPAVRGLLKTYNVDILDVKGTGKDGRVLKEDV  203
            LA+PA R L +   +D+ DVKGTG  GR+ KEDV
Sbjct  2    LASPAARKLARELGIDLSDVKGTGPGGRITKEDV  35



Lambda      K        H        a         alpha
   0.316    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00031170

Length=758


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 966220928


Query= TCONS_00031171

Length=562


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 702381160


Query= TCONS_00031173

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397622 pfam03643, Vps26, Vacuolar protein sorting-associated ...  457     6e-164


>CDD:397622 pfam03643, Vps26, Vacuolar protein sorting-associated protein 
26.  Vacuolar protein sorting-associated protein (Vps) 26 is 
one of around 50 proteins involved in protein trafficking. 
In particular, Vps26 assembles into a retromer complex with 
at least four other proteins Vps5, Vps17, Vps29 and Vps35. 
This family also contains Down syndrome critical region 3/A.
Length=275

 Score = 457 bits (1177),  Expect = 6e-164, Method: Composition-based stats.
 Identities = 182/274 (66%), Positives = 230/274 (84%), Gaps = 0/274 (0%)

Query  6    FSTPVDIDIVLEDSDERQTVDVKLDKGRRERVPLYMDGESVKGAVTVRPKDGKRLEHTGI  65
            F  P DI+I L++ +ER+TV+VK + G++E+ P+Y DGESV G V +R KDGK++EH GI
Sbjct  1    FGPPCDIEIKLDNEEERKTVEVKTEDGKKEKNPVYYDGESVSGKVNIRLKDGKKVEHQGI  60

Query  66   KVQFIGTIEMFYDRGNHYEFLSLVQELAAPGELQHPQTFPFNFKNVEKQYESYNGINVKL  125
            K++FIG IE+FYDRGN +EF SLV+ELA PGEL   +TFPF F  VEK YESY G+NV+L
Sbjct  61   KIEFIGQIELFYDRGNPHEFTSLVRELAPPGELTQNKTFPFEFPLVEKPYESYIGVNVRL  120

Query  126  RYFVRVTVSRRMADVIREKDLWVYSYRMPPETNNPIKMDVGIEDCLHIEFEYSKSKYHLK  185
            RYF+RVTV R + D+ +EKD WV+++   PETNN IKM+VGIEDCLHIEFEY+KSKYHLK
Sbjct  121  RYFLRVTVRRSLTDITKEKDFWVHNFTTYPETNNSIKMEVGIEDCLHIEFEYNKSKYHLK  180

Query  186  DVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGETIPI  245
            DVIVG+IYFLLVR+KIKHMEL +IRRE+TG+ PN + ESET+ +FEIMDG+P RGE+IPI
Sbjct  181  DVIVGKIYFLLVRIKIKHMELQLIRRESTGTGPNTFTESETIAKFEIMDGAPVRGESIPI  240

Query  246  RLFLGGFDLTPTFRDVNKKYSTRYYLSLVLIDED  279
            RLFL G+DLTPT RDVNKK+S +Y+L+LVL+DE+
Sbjct  241  RLFLAGYDLTPTMRDVNKKFSVKYFLNLVLVDEE  274



Lambda      K        H        a         alpha
   0.319    0.137    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00031172

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397622 pfam03643, Vps26, Vacuolar protein sorting-associated ...  369     6e-131


>CDD:397622 pfam03643, Vps26, Vacuolar protein sorting-associated protein 
26.  Vacuolar protein sorting-associated protein (Vps) 26 is 
one of around 50 proteins involved in protein trafficking. 
In particular, Vps26 assembles into a retromer complex with 
at least four other proteins Vps5, Vps17, Vps29 and Vps35. 
This family also contains Down syndrome critical region 3/A.
Length=275

 Score = 369 bits (948),  Expect = 6e-131, Method: Composition-based stats.
 Identities = 150/233 (64%), Positives = 190/233 (82%), Gaps = 2/233 (1%)

Query  6    FSTPVDIDIVLEDSDERQTVDVKLDKGRRERVPLYMDGESVKGAVTVRPKDGKRLEHTGI  65
            F  P DI+I L++ +ER+TV+VK + G++E+ P+Y DGESV G V +R KDGK++EH GI
Sbjct  1    FGPPCDIEIKLDNEEERKTVEVKTEDGKKEKNPVYYDGESVSGKVNIRLKDGKKVEHQGI  60

Query  66   KVQFIGTIEMFYDRGNHYEFLSLVQELAAPGELQHPQTFPFNFKNVEKQYESYNGINVKL  125
            K++FIG IE+FYDRGN +EF SLV+ELA PGEL   +TFPF F  VEK YESY G+NV+L
Sbjct  61   KIEFIGQIELFYDRGNPHEFTSLVRELAPPGELTQNKTFPFEFPLVEKPYESYIGVNVRL  120

Query  126  RYFVRVTVSRRMADVIREKDLWVYSYRMPPETNNPIKMDVGIEDCLHIEFEYSKSKYHLK  185
            RYF+RVTV R + D+ +EKD WV+++   PETNN IKM+VGIEDCLHIEFEY+KSKYHLK
Sbjct  121  RYFLRVTVRRSLTDITKEKDFWVHNFTTYPETNNSIKMEVGIEDCLHIEFEYNKSKYHLK  180

Query  186  DVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEV--GQPV  236
            DVIVG+IYFLLVR+KIKHMEL +IRRE+TG+ PN + ESET+ +FE+  G PV
Sbjct  181  DVIVGKIYFLLVRIKIKHMELQLIRRESTGTGPNTFTESETIAKFEIMDGAPV  233



Lambda      K        H        a         alpha
   0.320    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00035415

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397622 pfam03643, Vps26, Vacuolar protein sorting-associated ...  369     6e-131


>CDD:397622 pfam03643, Vps26, Vacuolar protein sorting-associated protein 
26.  Vacuolar protein sorting-associated protein (Vps) 26 is 
one of around 50 proteins involved in protein trafficking. 
In particular, Vps26 assembles into a retromer complex with 
at least four other proteins Vps5, Vps17, Vps29 and Vps35. 
This family also contains Down syndrome critical region 3/A.
Length=275

 Score = 369 bits (948),  Expect = 6e-131, Method: Composition-based stats.
 Identities = 150/233 (64%), Positives = 190/233 (82%), Gaps = 2/233 (1%)

Query  6    FSTPVDIDIVLEDSDERQTVDVKLDKGRRERVPLYMDGESVKGAVTVRPKDGKRLEHTGI  65
            F  P DI+I L++ +ER+TV+VK + G++E+ P+Y DGESV G V +R KDGK++EH GI
Sbjct  1    FGPPCDIEIKLDNEEERKTVEVKTEDGKKEKNPVYYDGESVSGKVNIRLKDGKKVEHQGI  60

Query  66   KVQFIGTIEMFYDRGNHYEFLSLVQELAAPGELQHPQTFPFNFKNVEKQYESYNGINVKL  125
            K++FIG IE+FYDRGN +EF SLV+ELA PGEL   +TFPF F  VEK YESY G+NV+L
Sbjct  61   KIEFIGQIELFYDRGNPHEFTSLVRELAPPGELTQNKTFPFEFPLVEKPYESYIGVNVRL  120

Query  126  RYFVRVTVSRRMADVIREKDLWVYSYRMPPETNNPIKMDVGIEDCLHIEFEYSKSKYHLK  185
            RYF+RVTV R + D+ +EKD WV+++   PETNN IKM+VGIEDCLHIEFEY+KSKYHLK
Sbjct  121  RYFLRVTVRRSLTDITKEKDFWVHNFTTYPETNNSIKMEVGIEDCLHIEFEYNKSKYHLK  180

Query  186  DVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEV--GQPV  236
            DVIVG+IYFLLVR+KIKHMEL +IRRE+TG+ PN + ESET+ +FE+  G PV
Sbjct  181  DVIVGKIYFLLVRIKIKHMELQLIRRESTGTGPNTFTESETIAKFEIMDGAPV  233



Lambda      K        H        a         alpha
   0.320    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00031174

Length=271
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397622 pfam03643, Vps26, Vacuolar protein sorting-associated ...  391     2e-139


>CDD:397622 pfam03643, Vps26, Vacuolar protein sorting-associated protein 
26.  Vacuolar protein sorting-associated protein (Vps) 26 is 
one of around 50 proteins involved in protein trafficking. 
In particular, Vps26 assembles into a retromer complex with 
at least four other proteins Vps5, Vps17, Vps29 and Vps35. 
This family also contains Down syndrome critical region 3/A.
Length=275

 Score = 391 bits (1007),  Expect = 2e-139, Method: Composition-based stats.
 Identities = 159/255 (62%), Positives = 202/255 (79%), Gaps = 0/255 (0%)

Query  6    FSTPVDIDIVLEDSDERQTVDVKLDKGRRERVPLYMDGESVKGAVTVRPKDGKRLEHTGI  65
            F  P DI+I L++ +ER+TV+VK + G++E+ P+Y DGESV G V +R KDGK++EH GI
Sbjct  1    FGPPCDIEIKLDNEEERKTVEVKTEDGKKEKNPVYYDGESVSGKVNIRLKDGKKVEHQGI  60

Query  66   KVQFIGTIEMFYDRGNHYEFLSLVQELAAPGELQHPQTFPFNFKNVEKQYESYNGINVKL  125
            K++FIG IE+FYDRGN +EF SLV+ELA PGEL   +TFPF F  VEK YESY G+NV+L
Sbjct  61   KIEFIGQIELFYDRGNPHEFTSLVRELAPPGELTQNKTFPFEFPLVEKPYESYIGVNVRL  120

Query  126  RYFVRVTVSRRMADVIREKDLWVYSYRMPPETNNPIKMDVGIEDCLHIEFEYSKSKYHLK  185
            RYF+RVTV R + D+ +EKD WV+++   PETNN IKM+VGIEDCLHIEFEY+KSKYHLK
Sbjct  121  RYFLRVTVRRSLTDITKEKDFWVHNFTTYPETNNSIKMEVGIEDCLHIEFEYNKSKYHLK  180

Query  186  DVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSRGELHPV  245
            DVIVG+IYFLLVR+KIKHMEL +IRRE+TG+ PN + ESET+ +FEIMDG+P RGE  P+
Sbjct  181  DVIVGKIYFLLVRIKIKHMELQLIRRESTGTGPNTFTESETIAKFEIMDGAPVRGESIPI  240

Query  246  EVASCQYCWHPTKSN  260
             +    Y   PT  +
Sbjct  241  RLFLAGYDLTPTMRD  255



Lambda      K        H        a         alpha
   0.320    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00031175

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397622 pfam03643, Vps26, Vacuolar protein sorting-associated ...  381     8e-136


>CDD:397622 pfam03643, Vps26, Vacuolar protein sorting-associated protein 
26.  Vacuolar protein sorting-associated protein (Vps) 26 is 
one of around 50 proteins involved in protein trafficking. 
In particular, Vps26 assembles into a retromer complex with 
at least four other proteins Vps5, Vps17, Vps29 and Vps35. 
This family also contains Down syndrome critical region 3/A.
Length=275

 Score = 381 bits (981),  Expect = 8e-136, Method: Composition-based stats.
 Identities = 154/236 (65%), Positives = 194/236 (82%), Gaps = 0/236 (0%)

Query  6    FSTPVDIDIVLEDSDERQTVDVKLDKGRRERVPLYMDGESVKGAVTVRPKDGKRLEHTGI  65
            F  P DI+I L++ +ER+TV+VK + G++E+ P+Y DGESV G V +R KDGK++EH GI
Sbjct  1    FGPPCDIEIKLDNEEERKTVEVKTEDGKKEKNPVYYDGESVSGKVNIRLKDGKKVEHQGI  60

Query  66   KVQFIGTIEMFYDRGNHYEFLSLVQELAAPGELQHPQTFPFNFKNVEKQYESYNGINVKL  125
            K++FIG IE+FYDRGN +EF SLV+ELA PGEL   +TFPF F  VEK YESY G+NV+L
Sbjct  61   KIEFIGQIELFYDRGNPHEFTSLVRELAPPGELTQNKTFPFEFPLVEKPYESYIGVNVRL  120

Query  126  RYFVRVTVSRRMADVIREKDLWVYSYRMPPETNNPIKMDVGIEDCLHIEFEYSKSKYHLK  185
            RYF+RVTV R + D+ +EKD WV+++   PETNN IKM+VGIEDCLHIEFEY+KSKYHLK
Sbjct  121  RYFLRVTVRRSLTDITKEKDFWVHNFTTYPETNNSIKMEVGIEDCLHIEFEYNKSKYHLK  180

Query  186  DVIVGRIYFLLVRLKIKHMELSIIRRETTGSPPNQYNESETLVRFEIMDGSPSREE  241
            DVIVG+IYFLLVR+KIKHMEL +IRRE+TG+ PN + ESET+ +FEIMDG+P R E
Sbjct  181  DVIVGKIYFLLVRIKIKHMELQLIRRESTGTGPNTFTESETIAKFEIMDGAPVRGE  236



Lambda      K        H        a         alpha
   0.321    0.138    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00031176

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  68.4    3e-16


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 68.4 bits (168),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (51%), Gaps = 8/89 (9%)

Query  33   DGEDMMMSNWNGTILGPPHSVHENRIYSVQIHCGPDYPDNPPTIQFISRVNIPCVDQKTG  92
              +++    W  TI+GP  + +E  ++ + +    DYP  PP ++F +++  P VD  +G
Sbjct  22   VDDNLF--EWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVD-SSG  78

Query  93   KVDPAKLPCLAQ--WKREYTMETILLEIR  119
            +V    L  L    W    T+E +LL I+
Sbjct  79   EVC---LDILKDERWSPALTLEQVLLSIQ  104



Lambda      K        H        a         alpha
   0.318    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00031177

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  68.4    3e-16


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 68.4 bits (168),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (51%), Gaps = 8/89 (9%)

Query  33   DGEDMMMSNWNGTILGPPHSVHENRIYSVQIHCGPDYPDNPPTIQFISRVNIPCVDQKTG  92
              +++    W  TI+GP  + +E  ++ + +    DYP  PP ++F +++  P VD  +G
Sbjct  22   VDDNLF--EWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVD-SSG  78

Query  93   KVDPAKLPCLAQ--WKREYTMETILLEIR  119
            +V    L  L    W    T+E +LL I+
Sbjct  79   EVC---LDILKDERWSPALTLEQVLLSIQ  104



Lambda      K        H        a         alpha
   0.318    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00031178

Length=280


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00035416

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  68.8    2e-16


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 68.8 bits (169),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (51%), Gaps = 8/89 (9%)

Query  33   DGEDMMMSNWNGTILGPPHSVHENRIYSVQIHCGPDYPDNPPTIQFISRVNIPCVDQKTG  92
              +++    W  TI+GP  + +E  ++ + +    DYP  PP ++F +++  P VD  +G
Sbjct  22   VDDNLF--EWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVD-SSG  78

Query  93   KVYPAKLPCLAQ--WKREYTMETILLEIR  119
            +V    L  L    W    T+E +LL I+
Sbjct  79   EVC---LDILKDERWSPALTLEQVLLSIQ  104



Lambda      K        H        a         alpha
   0.319    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00035417

Length=93
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  54.5    1e-11


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 54.5 bits (132),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (53%), Gaps = 2/57 (4%)

Query  33  DGEDMMMSNWNGTILGPPHSVHENRIYSVQIHCGPDYPDNPPTIQFISRVNIPCVDQ  89
             +++    W  TI+GP  + +E  ++ + +    DYP  PP ++F +++  P VD 
Sbjct  22  VDDNLF--EWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVDS  76



Lambda      K        H        a         alpha
   0.317    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00035419

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  68.4    3e-16


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 68.4 bits (168),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (51%), Gaps = 8/89 (9%)

Query  33   DGEDMMMSNWNGTILGPPHSVHENRIYSVQIHCGPDYPDNPPTIQFISRVNIPCVDQKTG  92
              +++    W  TI+GP  + +E  ++ + +    DYP  PP ++F +++  P VD  +G
Sbjct  22   VDDNLF--EWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVD-SSG  78

Query  93   KVDPAKLPCLAQ--WKREYTMETILLEIR  119
            +V    L  L    W    T+E +LL I+
Sbjct  79   EVC---LDILKDERWSPALTLEQVLLSIQ  104



Lambda      K        H        a         alpha
   0.318    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00035418

Length=103
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  65.7    1e-15


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 65.7 bits (161),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 43/83 (52%), Gaps = 6/83 (7%)

Query  3    MSNWNGTILGPPHSVHENRIYSVQIHCGPDYPDNPPTIQFISRVNIPCVDQKTGKVDPAK  62
            +  W  TI+GP  + +E  ++ + +    DYP  PP ++F +++  P VD  +G+V    
Sbjct  26   LFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVD-SSGEVC---  81

Query  63   LPCLAQ--WKREYTMETILLEIR  83
            L  L    W    T+E +LL I+
Sbjct  82   LDILKDERWSPALTLEQVLLSIQ  104



Lambda      K        H        a         alpha
   0.320    0.138    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00031179

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  73.4    4e-18


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 73.4 bits (181),  Expect = 4e-18, Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 46/89 (52%), Gaps = 8/89 (9%)

Query  33   DGEDMMMSNWNGTILGPPHSVHENRIYSVQIHCGPDYPDNPPTIQFISRVNIPCVDQKTG  92
              +++    W  TI+GP  + +E  ++ + +    DYP  PP ++F +++  P VD  +G
Sbjct  22   VDDNLF--EWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVD-SSG  78

Query  93   KVCPAKLPCLAQ--WKREYTMETILLEIR  119
            +VC   L  L    W    T+E +LL I+
Sbjct  79   EVC---LDILKDERWSPALTLEQVLLSIQ  104



Lambda      K        H        a         alpha
   0.319    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00031180

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  68.4    3e-16


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 68.4 bits (168),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (51%), Gaps = 8/89 (9%)

Query  33   DGEDMMMSNWNGTILGPPHSVHENRIYSVQIHCGPDYPDNPPTIQFISRVNIPCVDQKTG  92
              +++    W  TI+GP  + +E  ++ + +    DYP  PP ++F +++  P VD  +G
Sbjct  22   VDDNLF--EWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVD-SSG  78

Query  93   KVDPAKLPCLAQ--WKREYTMETILLEIR  119
            +V    L  L    W    T+E +LL I+
Sbjct  79   EVC---LDILKDERWSPALTLEQVLLSIQ  104



Lambda      K        H        a         alpha
   0.318    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00031181

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  59.5    7e-13


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 59.5 bits (145),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 24/89 (27%), Positives = 42/89 (47%), Gaps = 12/89 (13%)

Query  33   DGEDMMMSNWNGTILGPPH----NRIYSVQIHCGPDYPDNPPTIQFISRVNIPCVDQKTG  88
              +++    W  TI+GP        ++ + +    DYP  PP ++F +++  P VD  +G
Sbjct  22   VDDNLF--EWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVD-SSG  78

Query  89   KVDPAKLPCLAQ--WKREYTMETILLEIR  115
            +V    L  L    W    T+E +LL I+
Sbjct  79   EVC---LDILKDERWSPALTLEQVLLSIQ  104



Lambda      K        H        a         alpha
   0.319    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00035420

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  69.5    8e-17


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 69.5 bits (171),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (51%), Gaps = 8/89 (9%)

Query  33   DGEDMMMSNWNGTILGPPHSVHENRIYSVQIHCGPDYPDNPPTIQFISRVNIPCVDQKTG  92
              +++    W  TI+GP  + +E  ++ + +    DYP  PP ++F +++  P VD  +G
Sbjct  22   VDDNLF--EWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVD-SSG  78

Query  93   KVYPAKLPCLAQ--WKREYTMETILLEIR  119
            +V    L  L    W    T+E +LL I+
Sbjct  79   EVC---LDILKDERWSPALTLEQVLLSIQ  104



Lambda      K        H        a         alpha
   0.321    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00035421

Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  56.0    4e-12


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 56.0 bits (136),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 34/62 (55%), Gaps = 3/62 (5%)

Query  33  DGEDMMMSNWNGTILGPPHSVHENRIYSVQIHCGPDYPDNPPTIQFISRVNIPCVDQKTG  92
             +++    W  TI+GP  + +E  ++ + +    DYP  PP ++F +++  P VD  +G
Sbjct  22  VDDNLF--EWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVD-SSG  78

Query  93  KV  94
           +V
Sbjct  79  EV  80



Lambda      K        H        a         alpha
   0.317    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00031182

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  69.5    9e-17


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 69.5 bits (171),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (51%), Gaps = 8/89 (9%)

Query  33   DGEDMMMSNWNGTILGPPHSVHENRIYSVQIHCGPDYPDNPPTIQFISRVNIPCVDQKTG  92
              +++    W  TI+GP  + +E  ++ + +    DYP  PP ++F +++  P VD  +G
Sbjct  22   VDDNLF--EWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVD-SSG  78

Query  93   KVDPAKLPCLAQ--WKREYTMETILLEIR  119
            +V    L  L    W    T+E +LL I+
Sbjct  79   EVC---LDILKDERWSPALTLEQVLLSIQ  104



Lambda      K        H        a         alpha
   0.320    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00035422

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Prote...  68.4    3e-16


>CDD:459701 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins destined 
for proteasome-mediated degradation may be ubiquitinated. 
Ubiquitination follows conjugation of ubiquitin to a conserved 
cysteine residue of UBC homologs. TSG101 is one of several 
UBC homologs that lacks this active site cysteine.
Length=139

 Score = 68.4 bits (168),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (51%), Gaps = 8/89 (9%)

Query  33   DGEDMMMSNWNGTILGPPHSVHENRIYSVQIHCGPDYPDNPPTIQFISRVNIPCVDQKTG  92
              +++    W  TI+GP  + +E  ++ + +    DYP  PP ++F +++  P VD  +G
Sbjct  22   VDDNLF--EWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTTKIYHPNVD-SSG  78

Query  93   KVDPAKLPCLAQ--WKREYTMETILLEIR  119
            +V    L  L    W    T+E +LL I+
Sbjct  79   EVC---LDILKDERWSPALTLEQVLLSIQ  104



Lambda      K        H        a         alpha
   0.318    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00035423

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.122    0.318    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00031183

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00035424

Length=220


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00031184

Length=370


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0773    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00035425

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00031185

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00031186

Length=400


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00031187

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  239     1e-77


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 239 bits (611),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 92/228 (40%), Positives = 122/228 (54%), Gaps = 49/228 (21%)

Query  186  GAGISTSLGIPDFRSKDTGLYSQLEHLGLSDPQEVFDIHVFREDPNIFFSIAKDILPTEK  245
            GAGIST  GIPDFRS D GLY++L    L+ P+  F       DP  F++IA+++LP E 
Sbjct  1    GAGISTESGIPDFRSDD-GLYAKLAPEELASPEAFFSNPELVWDPEPFYNIARELLPGEA  59

Query  246  KFSPTHAFIKLLQDQGKLLTNYTQNIDNIEANAGILPEKILQCHGSFATATCVKCHHKVK  305
            + +P H FI  L+D+GKLL   TQNID +   AG   +K+++ HGSFA A CV CH K  
Sbjct  60   QPNPAHYFIAKLEDKGKLLRLITQNIDGLHERAGS--KKVVELHGSFAKARCVSCHQKYT  117

Query  306  GEEIFDDIKKGIVPECVACKESLEDDSLKPQGLKRKRMSNGTQKSRKKDGEDSSEEEDYE  365
            GE +++ I+   VP C  C                                         
Sbjct  118  GETLYERIRPEKVPHCPQC-----------------------------------------  136

Query  366  IPTPGVMKPDITFFGEDLPDEFGRRLLHHDRDKVDLVIVIGTSLKVAP  413
                G++KPDI FFGE+LPD+F R   + D ++ DL+IVIGTSLKV P
Sbjct  137  ---GGLLKPDIVFFGENLPDKFHR--AYEDLEEADLLIVIGTSLKVYP  179



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00031188

Length=119
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  70.4    8e-17


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 70.4 bits (173),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 35/45 (78%), Gaps = 2/45 (4%)

Query  27   PGVMKPDITFFGEDLPDEFGRRLLHHDRDKVDLVIVIGTSLKVAP  71
             G++KPDI FFGE+LPD+F R   + D ++ DL+IVIGTSLKV P
Sbjct  137  GGLLKPDIVFFGENLPDKFHR--AYEDLEEADLLIVIGTSLKVYP  179



Lambda      K        H        a         alpha
   0.319    0.139    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00031190

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  69.6    3e-16


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 69.6 bits (171),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 35/45 (78%), Gaps = 2/45 (4%)

Query  27   PGVMKPDITFFGEDLPDEFGRRLLHHDRDKVDLVIVIGTSLKVAP  71
             G++KPDI FFGE+LPD+F R   + D ++ DL+IVIGTSLKV P
Sbjct  137  GGLLKPDIVFFGENLPDKFHR--AYEDLEEADLLIVIGTSLKVYP  179



Lambda      K        H        a         alpha
   0.317    0.139    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00035426

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  237     4e-79


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 237 bits (606),  Expect = 4e-79, Method: Composition-based stats.
 Identities = 92/228 (40%), Positives = 122/228 (54%), Gaps = 49/228 (21%)

Query  56   GAGISTSLGIPDFRSKDTGLYSQLEHLGLSDPQEVFDIHVFREDPNIFFSIAKDILPTEK  115
            GAGIST  GIPDFRS D GLY++L    L+ P+  F       DP  F++IA+++LP E 
Sbjct  1    GAGISTESGIPDFRSDD-GLYAKLAPEELASPEAFFSNPELVWDPEPFYNIARELLPGEA  59

Query  116  KFSPTHAFIKLLQDQGKLLTNYTQNIDNIEANAGILPEKILQCHGSFATATCVKCHHKVK  175
            + +P H FI  L+D+GKLL   TQNID +   AG   +K+++ HGSFA A CV CH K  
Sbjct  60   QPNPAHYFIAKLEDKGKLLRLITQNIDGLHERAGS--KKVVELHGSFAKARCVSCHQKYT  117

Query  176  GEEIFDDIKKGIVPECVACKESLEDDSLKPQGLKRKRMSNGTQKSRKKDGEDSSEEEDYE  235
            GE +++ I+   VP C  C                                         
Sbjct  118  GETLYERIRPEKVPHCPQC-----------------------------------------  136

Query  236  IPTPGVMKPDITFFGEDLPDEFGRRLLHHDRDKVDLVIVIGTSLKVAP  283
                G++KPDI FFGE+LPD+F R   + D ++ DL+IVIGTSLKV P
Sbjct  137  ---GGLLKPDIVFFGENLPDKFHR--AYEDLEEADLLIVIGTSLKVYP  179



Lambda      K        H        a         alpha
   0.319    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00035427

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  239     1e-77


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 239 bits (611),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 92/228 (40%), Positives = 122/228 (54%), Gaps = 49/228 (21%)

Query  186  GAGISTSLGIPDFRSKDTGLYSQLEHLGLSDPQEVFDIHVFREDPNIFFSIAKDILPTEK  245
            GAGIST  GIPDFRS D GLY++L    L+ P+  F       DP  F++IA+++LP E 
Sbjct  1    GAGISTESGIPDFRSDD-GLYAKLAPEELASPEAFFSNPELVWDPEPFYNIARELLPGEA  59

Query  246  KFSPTHAFIKLLQDQGKLLTNYTQNIDNIEANAGILPEKILQCHGSFATATCVKCHHKVK  305
            + +P H FI  L+D+GKLL   TQNID +   AG   +K+++ HGSFA A CV CH K  
Sbjct  60   QPNPAHYFIAKLEDKGKLLRLITQNIDGLHERAGS--KKVVELHGSFAKARCVSCHQKYT  117

Query  306  GEEIFDDIKKGIVPECVACKESLEDDSLKPQGLKRKRMSNGTQKSRKKDGEDSSEEEDYE  365
            GE +++ I+   VP C  C                                         
Sbjct  118  GETLYERIRPEKVPHCPQC-----------------------------------------  136

Query  366  IPTPGVMKPDITFFGEDLPDEFGRRLLHHDRDKVDLVIVIGTSLKVAP  413
                G++KPDI FFGE+LPD+F R   + D ++ DL+IVIGTSLKV P
Sbjct  137  ---GGLLKPDIVFFGENLPDKFHR--AYEDLEEADLLIVIGTSLKVYP  179



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00031189

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  239     4e-78


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 239 bits (612),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 92/228 (40%), Positives = 122/228 (54%), Gaps = 49/228 (21%)

Query  186  GAGISTSLGIPDFRSKDTGLYSQLEHLGLSDPQEVFDIHVFREDPNIFFSIAKDILPTEK  245
            GAGIST  GIPDFRS D GLY++L    L+ P+  F       DP  F++IA+++LP E 
Sbjct  1    GAGISTESGIPDFRSDD-GLYAKLAPEELASPEAFFSNPELVWDPEPFYNIARELLPGEA  59

Query  246  KFSPTHAFIKLLQDQGKLLTNYTQNIDNIEANAGILPEKILQCHGSFATATCVKCHHKVK  305
            + +P H FI  L+D+GKLL   TQNID +   AG   +K+++ HGSFA A CV CH K  
Sbjct  60   QPNPAHYFIAKLEDKGKLLRLITQNIDGLHERAGS--KKVVELHGSFAKARCVSCHQKYT  117

Query  306  GEEIFDDIKKGIVPECVACKESLEDDSLKPQGLKRKRMSNGTQKSRKKDGEDSSEEEDYE  365
            GE +++ I+   VP C  C                                         
Sbjct  118  GETLYERIRPEKVPHCPQC-----------------------------------------  136

Query  366  IPTPGVMKPDITFFGEDLPDEFGRRLLHHDRDKVDLVIVIGTSLKVAP  413
                G++KPDI FFGE+LPD+F R   + D ++ DL+IVIGTSLKV P
Sbjct  137  ---GGLLKPDIVFFGENLPDKFHR--AYEDLEEADLLIVIGTSLKVYP  179



Lambda      K        H        a         alpha
   0.316    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 569004184


Query= TCONS_00035428

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  236     2e-78


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 236 bits (605),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 92/228 (40%), Positives = 122/228 (54%), Gaps = 49/228 (21%)

Query  56   GAGISTSLGIPDFRSKDTGLYSQLEHLGLSDPQEVFDIHVFREDPNIFFSIAKDILPTEK  115
            GAGIST  GIPDFRS D GLY++L    L+ P+  F       DP  F++IA+++LP E 
Sbjct  1    GAGISTESGIPDFRSDD-GLYAKLAPEELASPEAFFSNPELVWDPEPFYNIARELLPGEA  59

Query  116  KFSPTHAFIKLLQDQGKLLTNYTQNIDNIEANAGILPEKILQCHGSFATATCVKCHHKVK  175
            + +P H FI  L+D+GKLL   TQNID +   AG   +K+++ HGSFA A CV CH K  
Sbjct  60   QPNPAHYFIAKLEDKGKLLRLITQNIDGLHERAGS--KKVVELHGSFAKARCVSCHQKYT  117

Query  176  GEEIFDDIKKGIVPECVACKESLEDDSLKPQGLKRKRMSNGTQKSRKKDGEDSSEEEDYE  235
            GE +++ I+   VP C  C                                         
Sbjct  118  GETLYERIRPEKVPHCPQC-----------------------------------------  136

Query  236  IPTPGVMKPDITFFGEDLPDEFGRRLLHHDRDKVDLVIVIGTSLKVAP  283
                G++KPDI FFGE+LPD+F R   + D ++ DL+IVIGTSLKV P
Sbjct  137  ---GGLLKPDIVFFGENLPDKFHR--AYEDLEEADLLIVIGTSLKVYP  179



Lambda      K        H        a         alpha
   0.318    0.139    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00031191

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426621 pfam02146, SIR2, Sir2 family. This region is character...  236     2e-78


>CDD:426621 pfam02146, SIR2, Sir2 family.  This region is characteristic 
of Silent information regulator 2 (Sir2) proteins, or sirtuins. 
These are protein deacetylases that depend on nicotine adenine 
dinucleotide (NAD). They are found in many subcellular 
locations, including the nucleus, cytoplasm and mitochondria. 
Eukaryotic forms play in important role in the regulation 
of transcriptional repression. Moreover, they are involved 
in microtubule organisation and DNA damage repair processes.i.
Length=179

 Score = 236 bits (605),  Expect = 2e-78, Method: Composition-based stats.
 Identities = 92/228 (40%), Positives = 122/228 (54%), Gaps = 49/228 (21%)

Query  56   GAGISTSLGIPDFRSKDTGLYSQLEHLGLSDPQEVFDIHVFREDPNIFFSIAKDILPTEK  115
            GAGIST  GIPDFRS D GLY++L    L+ P+  F       DP  F++IA+++LP E 
Sbjct  1    GAGISTESGIPDFRSDD-GLYAKLAPEELASPEAFFSNPELVWDPEPFYNIARELLPGEA  59

Query  116  KFSPTHAFIKLLQDQGKLLTNYTQNIDNIEANAGILPEKILQCHGSFATATCVKCHHKVK  175
            + +P H FI  L+D+GKLL   TQNID +   AG   +K+++ HGSFA A CV CH K  
Sbjct  60   QPNPAHYFIAKLEDKGKLLRLITQNIDGLHERAGS--KKVVELHGSFAKARCVSCHQKYT  117

Query  176  GEEIFDDIKKGIVPECVACKESLEDDSLKPQGLKRKRMSNGTQKSRKKDGEDSSEEEDYE  235
            GE +++ I+   VP C  C                                         
Sbjct  118  GETLYERIRPEKVPHCPQC-----------------------------------------  136

Query  236  IPTPGVMKPDITFFGEDLPDEFGRRLLHHDRDKVDLVIVIGTSLKVAP  283
                G++KPDI FFGE+LPD+F R   + D ++ DL+IVIGTSLKV P
Sbjct  137  ---GGLLKPDIVFFGENLPDKFHR--AYEDLEEADLLIVIGTSLKVYP  179



Lambda      K        H        a         alpha
   0.318    0.139    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00031192

Length=336


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00031193

Length=425


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521922912


Query= TCONS_00031194

Length=263


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 290477132


Query= TCONS_00035429

Length=456


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00035430

Length=510


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 634393654


Query= TCONS_00035431

Length=456


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00031196

Length=444


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 542931216


Query= TCONS_00031197

Length=489


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00031199

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain. Cyclin...  200     2e-64
CDD:397230 pfam02984, Cyclin_C, Cyclin, C-terminal domain. Cyclin...  105     6e-28


>CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain.  Cyclins regulate 
cyclin dependent kinases (CDKs). Cyclin-0 (CCNO) is a Uracil-DNA 
glycosylase that is related to other cyclins. Cyclins 
contain two domains of similar all-alpha fold, of which 
this family corresponds with the N-terminal domain.
Length=127

 Score = 200 bits (512),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 71/127 (56%), Positives = 96/127 (76%), Gaps = 0/127 (0%)

Query  220  EIFDYLRDLELETLPNPHYIDHQPDLEWKMRGILVDWLIEVHTRFRLLPETLFLAVNIID  279
            +IF YLR+LEL+ LP P Y+D QPD+  KMR IL+DWL+EVH +F+LLPETL+LAVN +D
Sbjct  1    DIFQYLRELELKYLPKPDYMDQQPDINPKMRAILIDWLVEVHEKFKLLPETLYLAVNYLD  60

Query  280  RFLSAEVVALDRLQLVGVAAMFIASKYEEVLSPHVANFSHVADETFTDKEILDAERHILA  339
            RFLS + V  ++LQLVGV  +FIA+KYEE+  P V +  ++ D  +T +EIL  ER IL 
Sbjct  61   RFLSKKSVPKNKLQLVGVTCLFIAAKYEEIYPPTVEDLVYITDNAYTREEILRMERLILE  120

Query  340  TLEYNMS  346
            TL +++S
Sbjct  121  TLNFDLS  127


>CDD:397230 pfam02984, Cyclin_C, Cyclin, C-terminal domain.  Cyclins regulate 
cyclin dependent kinases (CDKs). Human CCNO is a Uracil-DNA 
glycosylase that is related to other cyclins. Cyclins contain 
two domains of similar all-alpha fold, of which this 
family corresponds with the C-terminal domain.
Length=119

 Score = 105 bits (263),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (3%)

Query  348  PNPMNFLRRISKADNY--DIQTRTLGKYLMEISLLDHRFMCYPQSHVAAAAMYLARLILE  405
            P P++FLRR SKA +Y  D++ RTL KYL+E++LLD+ F+ YP S +AAAA+YLAR  L 
Sbjct  1    PTPLSFLRRFSKAADYLHDLELRTLAKYLLELTLLDYDFLKYPPSLIAAAAVYLARKTLN  60

Query  406  RGAWVRTL  413
               W  TL
Sbjct  61   SPEWTETL  68



Lambda      K        H        a         alpha
   0.312    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00031200

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain. Cyclin...  200     2e-64
CDD:397230 pfam02984, Cyclin_C, Cyclin, C-terminal domain. Cyclin...  105     6e-28


>CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain.  Cyclins regulate 
cyclin dependent kinases (CDKs). Cyclin-0 (CCNO) is a Uracil-DNA 
glycosylase that is related to other cyclins. Cyclins 
contain two domains of similar all-alpha fold, of which 
this family corresponds with the N-terminal domain.
Length=127

 Score = 200 bits (512),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 71/127 (56%), Positives = 96/127 (76%), Gaps = 0/127 (0%)

Query  220  EIFDYLRDLELETLPNPHYIDHQPDLEWKMRGILVDWLIEVHTRFRLLPETLFLAVNIID  279
            +IF YLR+LEL+ LP P Y+D QPD+  KMR IL+DWL+EVH +F+LLPETL+LAVN +D
Sbjct  1    DIFQYLRELELKYLPKPDYMDQQPDINPKMRAILIDWLVEVHEKFKLLPETLYLAVNYLD  60

Query  280  RFLSAEVVALDRLQLVGVAAMFIASKYEEVLSPHVANFSHVADETFTDKEILDAERHILA  339
            RFLS + V  ++LQLVGV  +FIA+KYEE+  P V +  ++ D  +T +EIL  ER IL 
Sbjct  61   RFLSKKSVPKNKLQLVGVTCLFIAAKYEEIYPPTVEDLVYITDNAYTREEILRMERLILE  120

Query  340  TLEYNMS  346
            TL +++S
Sbjct  121  TLNFDLS  127


>CDD:397230 pfam02984, Cyclin_C, Cyclin, C-terminal domain.  Cyclins regulate 
cyclin dependent kinases (CDKs). Human CCNO is a Uracil-DNA 
glycosylase that is related to other cyclins. Cyclins contain 
two domains of similar all-alpha fold, of which this 
family corresponds with the C-terminal domain.
Length=119

 Score = 105 bits (263),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (3%)

Query  348  PNPMNFLRRISKADNY--DIQTRTLGKYLMEISLLDHRFMCYPQSHVAAAAMYLARLILE  405
            P P++FLRR SKA +Y  D++ RTL KYL+E++LLD+ F+ YP S +AAAA+YLAR  L 
Sbjct  1    PTPLSFLRRFSKAADYLHDLELRTLAKYLLELTLLDYDFLKYPPSLIAAAAVYLARKTLN  60

Query  406  RGAWVRTL  413
               W  TL
Sbjct  61   SPEWTETL  68



Lambda      K        H        a         alpha
   0.312    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00035432

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain. Cyclin...  200     2e-64
CDD:397230 pfam02984, Cyclin_C, Cyclin, C-terminal domain. Cyclin...  105     6e-28


>CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain.  Cyclins regulate 
cyclin dependent kinases (CDKs). Cyclin-0 (CCNO) is a Uracil-DNA 
glycosylase that is related to other cyclins. Cyclins 
contain two domains of similar all-alpha fold, of which 
this family corresponds with the N-terminal domain.
Length=127

 Score = 200 bits (512),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 71/127 (56%), Positives = 96/127 (76%), Gaps = 0/127 (0%)

Query  220  EIFDYLRDLELETLPNPHYIDHQPDLEWKMRGILVDWLIEVHTRFRLLPETLFLAVNIID  279
            +IF YLR+LEL+ LP P Y+D QPD+  KMR IL+DWL+EVH +F+LLPETL+LAVN +D
Sbjct  1    DIFQYLRELELKYLPKPDYMDQQPDINPKMRAILIDWLVEVHEKFKLLPETLYLAVNYLD  60

Query  280  RFLSAEVVALDRLQLVGVAAMFIASKYEEVLSPHVANFSHVADETFTDKEILDAERHILA  339
            RFLS + V  ++LQLVGV  +FIA+KYEE+  P V +  ++ D  +T +EIL  ER IL 
Sbjct  61   RFLSKKSVPKNKLQLVGVTCLFIAAKYEEIYPPTVEDLVYITDNAYTREEILRMERLILE  120

Query  340  TLEYNMS  346
            TL +++S
Sbjct  121  TLNFDLS  127


>CDD:397230 pfam02984, Cyclin_C, Cyclin, C-terminal domain.  Cyclins regulate 
cyclin dependent kinases (CDKs). Human CCNO is a Uracil-DNA 
glycosylase that is related to other cyclins. Cyclins contain 
two domains of similar all-alpha fold, of which this 
family corresponds with the C-terminal domain.
Length=119

 Score = 105 bits (263),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (3%)

Query  348  PNPMNFLRRISKADNY--DIQTRTLGKYLMEISLLDHRFMCYPQSHVAAAAMYLARLILE  405
            P P++FLRR SKA +Y  D++ RTL KYL+E++LLD+ F+ YP S +AAAA+YLAR  L 
Sbjct  1    PTPLSFLRRFSKAADYLHDLELRTLAKYLLELTLLDYDFLKYPPSLIAAAAVYLARKTLN  60

Query  406  RGAWVRTL  413
               W  TL
Sbjct  61   SPEWTETL  68



Lambda      K        H        a         alpha
   0.312    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00031201

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain. Cyclin...  200     2e-64
CDD:397230 pfam02984, Cyclin_C, Cyclin, C-terminal domain. Cyclin...  105     6e-28


>CDD:459686 pfam00134, Cyclin_N, Cyclin, N-terminal domain.  Cyclins regulate 
cyclin dependent kinases (CDKs). Cyclin-0 (CCNO) is a Uracil-DNA 
glycosylase that is related to other cyclins. Cyclins 
contain two domains of similar all-alpha fold, of which 
this family corresponds with the N-terminal domain.
Length=127

 Score = 200 bits (512),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 71/127 (56%), Positives = 96/127 (76%), Gaps = 0/127 (0%)

Query  220  EIFDYLRDLELETLPNPHYIDHQPDLEWKMRGILVDWLIEVHTRFRLLPETLFLAVNIID  279
            +IF YLR+LEL+ LP P Y+D QPD+  KMR IL+DWL+EVH +F+LLPETL+LAVN +D
Sbjct  1    DIFQYLRELELKYLPKPDYMDQQPDINPKMRAILIDWLVEVHEKFKLLPETLYLAVNYLD  60

Query  280  RFLSAEVVALDRLQLVGVAAMFIASKYEEVLSPHVANFSHVADETFTDKEILDAERHILA  339
            RFLS + V  ++LQLVGV  +FIA+KYEE+  P V +  ++ D  +T +EIL  ER IL 
Sbjct  61   RFLSKKSVPKNKLQLVGVTCLFIAAKYEEIYPPTVEDLVYITDNAYTREEILRMERLILE  120

Query  340  TLEYNMS  346
            TL +++S
Sbjct  121  TLNFDLS  127


>CDD:397230 pfam02984, Cyclin_C, Cyclin, C-terminal domain.  Cyclins regulate 
cyclin dependent kinases (CDKs). Human CCNO is a Uracil-DNA 
glycosylase that is related to other cyclins. Cyclins contain 
two domains of similar all-alpha fold, of which this 
family corresponds with the C-terminal domain.
Length=119

 Score = 105 bits (263),  Expect = 6e-28, Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (3%)

Query  348  PNPMNFLRRISKADNY--DIQTRTLGKYLMEISLLDHRFMCYPQSHVAAAAMYLARLILE  405
            P P++FLRR SKA +Y  D++ RTL KYL+E++LLD+ F+ YP S +AAAA+YLAR  L 
Sbjct  1    PTPLSFLRRFSKAADYLHDLELRTLAKYLLELTLLDYDFLKYPPSLIAAAAVYLARKTLN  60

Query  406  RGAWVRTL  413
               W  TL
Sbjct  61   SPEWTETL  68



Lambda      K        H        a         alpha
   0.312    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00031203

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427606 pfam03947, Ribosomal_L2_C, Ribosomal Proteins L2, C-te...  208     2e-67
CDD:395129 pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RNA bi...  99.2    2e-26


>CDD:427606 pfam03947, Ribosomal_L2_C, Ribosomal Proteins L2, C-terminal 
domain.  
Length=123

 Score = 208 bits (531),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 74/155 (48%), Positives = 89/155 (57%), Gaps = 34/155 (22%)

Query  212  GNCLPLHMIPVGTLIFNVGLRPGKGGQLCRSAGTYATVISKGSDTKTRDNEVETQEDGTE  271
            GN LPL  IP GT++ N+ L+PG GGQL RSAGTYA +++K                   
Sbjct  3    GNALPLKNIPEGTIVHNIELKPGDGGQLARSAGTYAQIVAKEGK----------------  46

Query  272  VQKPLSQREKQKQERIAQHVTIRLQSGEVRLIHKDCCATVGVASNPNHQYRQLGKAGRAR  331
                              +VT+RL SGEVRL+  DC AT+GV SN  H+ + LGKAGR R
Sbjct  47   ------------------YVTVRLPSGEVRLVSSDCRATIGVVSNGGHKNKPLGKAGRKR  88

Query  332  WLNIRPTVRGVAMNAADHPHGGGRGKSKGNVDPKS  366
            WL  RPTVRGVAMN  DHPHGGG G++ G   P S
Sbjct  89   WLGRRPTVRGVAMNPVDHPHGGGEGRTVGRKHPVS  123


>CDD:395129 pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RNA binding domain. 
 
Length=77

 Score = 99.2 bits (248),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 41/78 (53%), Positives = 52/78 (67%), Gaps = 2/78 (3%)

Query  106  GRNNTGRVTVRHRGGGHKRRIRIVDFARTAPG-PHLVERIEHDPGRSAHIALVRSQETQK  164
            GRNN GR+T RHRGGGHK++ R++DF R        V  IE+DP R+A IALV   E  +
Sbjct  1    GRNNPGRITSRHRGGGHKKKYRLIDFKRNKDDVKGKVVEIEYDPNRNAPIALV-KYEDGE  59

Query  165  LSYILAAEGMRAGDVVQS  182
              YILA EG++ GD V+S
Sbjct  60   KRYILAPEGLKVGDTVES  77



Lambda      K        H        a         alpha
   0.318    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00031202

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427606 pfam03947, Ribosomal_L2_C, Ribosomal Proteins L2, C-te...  209     2e-68
CDD:395129 pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RNA bi...  101     3e-27


>CDD:427606 pfam03947, Ribosomal_L2_C, Ribosomal Proteins L2, C-terminal 
domain.  
Length=123

 Score = 209 bits (536),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 74/155 (48%), Positives = 89/155 (57%), Gaps = 34/155 (22%)

Query  212  GNCLPLHMIPVGTLIFNVGLRPGKGGQLCRSAGTYATVISKGSDTKTRDNEVETQEDGTE  271
            GN LPL  IP GT++ N+ L+PG GGQL RSAGTYA +++K                   
Sbjct  3    GNALPLKNIPEGTIVHNIELKPGDGGQLARSAGTYAQIVAKEGK----------------  46

Query  272  VQKPLSQREKQKQERIAQHVTIRLQSGEVRLIHKDCCATVGVASNPNHQYRQLGKAGRAR  331
                              +VT+RL SGEVRL+  DC AT+GV SN  H+ + LGKAGR R
Sbjct  47   ------------------YVTVRLPSGEVRLVSSDCRATIGVVSNGGHKNKPLGKAGRKR  88

Query  332  WLNIRPTVRGVAMNAADHPHGGGRGKSKGNVDPKS  366
            WL  RPTVRGVAMN  DHPHGGG G++ G   P S
Sbjct  89   WLGRRPTVRGVAMNPVDHPHGGGEGRTVGRKHPVS  123


>CDD:395129 pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RNA binding domain. 
 
Length=77

 Score = 101 bits (253),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 41/78 (53%), Positives = 52/78 (67%), Gaps = 2/78 (3%)

Query  106  GRNNTGRVTVRHRGGGHKRRIRIVDFARTAPG-PHLVERIEHDPGRSAHIALVRSQETQK  164
            GRNN GR+T RHRGGGHK++ R++DF R        V  IE+DP R+A IALV   E  +
Sbjct  1    GRNNPGRITSRHRGGGHKKKYRLIDFKRNKDDVKGKVVEIEYDPNRNAPIALV-KYEDGE  59

Query  165  LSYILAAEGMRAGDVVQS  182
              YILA EG++ GD V+S
Sbjct  60   KRYILAPEGLKVGDTVES  77



Lambda      K        H        a         alpha
   0.319    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00035433

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427606 pfam03947, Ribosomal_L2_C, Ribosomal Proteins L2, C-te...  208     2e-67
CDD:395129 pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RNA bi...  99.2    2e-26


>CDD:427606 pfam03947, Ribosomal_L2_C, Ribosomal Proteins L2, C-terminal 
domain.  
Length=123

 Score = 208 bits (531),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 74/155 (48%), Positives = 89/155 (57%), Gaps = 34/155 (22%)

Query  212  GNCLPLHMIPVGTLIFNVGLRPGKGGQLCRSAGTYATVISKGSDTKTRDNEVETQEDGTE  271
            GN LPL  IP GT++ N+ L+PG GGQL RSAGTYA +++K                   
Sbjct  3    GNALPLKNIPEGTIVHNIELKPGDGGQLARSAGTYAQIVAKEGK----------------  46

Query  272  VQKPLSQREKQKQERIAQHVTIRLQSGEVRLIHKDCCATVGVASNPNHQYRQLGKAGRAR  331
                              +VT+RL SGEVRL+  DC AT+GV SN  H+ + LGKAGR R
Sbjct  47   ------------------YVTVRLPSGEVRLVSSDCRATIGVVSNGGHKNKPLGKAGRKR  88

Query  332  WLNIRPTVRGVAMNAADHPHGGGRGKSKGNVDPKS  366
            WL  RPTVRGVAMN  DHPHGGG G++ G   P S
Sbjct  89   WLGRRPTVRGVAMNPVDHPHGGGEGRTVGRKHPVS  123


>CDD:395129 pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RNA binding domain. 
 
Length=77

 Score = 99.2 bits (248),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 41/78 (53%), Positives = 52/78 (67%), Gaps = 2/78 (3%)

Query  106  GRNNTGRVTVRHRGGGHKRRIRIVDFARTAPG-PHLVERIEHDPGRSAHIALVRSQETQK  164
            GRNN GR+T RHRGGGHK++ R++DF R        V  IE+DP R+A IALV   E  +
Sbjct  1    GRNNPGRITSRHRGGGHKKKYRLIDFKRNKDDVKGKVVEIEYDPNRNAPIALV-KYEDGE  59

Query  165  LSYILAAEGMRAGDVVQS  182
              YILA EG++ GD V+S
Sbjct  60   KRYILAPEGLKVGDTVES  77



Lambda      K        H        a         alpha
   0.318    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00035434

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427606 pfam03947, Ribosomal_L2_C, Ribosomal Proteins L2, C-te...  209     2e-68
CDD:395129 pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RNA bi...  100     4e-27


>CDD:427606 pfam03947, Ribosomal_L2_C, Ribosomal Proteins L2, C-terminal 
domain.  
Length=123

 Score = 209 bits (535),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 74/155 (48%), Positives = 89/155 (57%), Gaps = 34/155 (22%)

Query  212  GNCLPLHMIPVGTLIFNVGLRPGKGGQLCRSAGTYATVISKGSDTKTRDNEVETQEDGTE  271
            GN LPL  IP GT++ N+ L+PG GGQL RSAGTYA +++K                   
Sbjct  3    GNALPLKNIPEGTIVHNIELKPGDGGQLARSAGTYAQIVAKEGK----------------  46

Query  272  VQKPLSQREKQKQERIAQHVTIRLQSGEVRLIHKDCCATVGVASNPNHQYRQLGKAGRAR  331
                              +VT+RL SGEVRL+  DC AT+GV SN  H+ + LGKAGR R
Sbjct  47   ------------------YVTVRLPSGEVRLVSSDCRATIGVVSNGGHKNKPLGKAGRKR  88

Query  332  WLNIRPTVRGVAMNAADHPHGGGRGKSKGNVDPKS  366
            WL  RPTVRGVAMN  DHPHGGG G++ G   P S
Sbjct  89   WLGRRPTVRGVAMNPVDHPHGGGEGRTVGRKHPVS  123


>CDD:395129 pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RNA binding domain. 
 
Length=77

 Score = 100 bits (251),  Expect = 4e-27, Method: Composition-based stats.
 Identities = 41/78 (53%), Positives = 52/78 (67%), Gaps = 2/78 (3%)

Query  106  GRNNTGRVTVRHRGGGHKRRIRIVDFARTAPG-PHLVERIEHDPGRSAHIALVRSQETQK  164
            GRNN GR+T RHRGGGHK++ R++DF R        V  IE+DP R+A IALV   E  +
Sbjct  1    GRNNPGRITSRHRGGGHKKKYRLIDFKRNKDDVKGKVVEIEYDPNRNAPIALV-KYEDGE  59

Query  165  LSYILAAEGMRAGDVVQS  182
              YILA EG++ GD V+S
Sbjct  60   KRYILAPEGLKVGDTVES  77



Lambda      K        H        a         alpha
   0.318    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0738    0.140     1.90     42.6     43.6 

Effective search space used: 446726320


Query= TCONS_00031204

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427606 pfam03947, Ribosomal_L2_C, Ribosomal Proteins L2, C-te...  209     2e-68
CDD:395129 pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RNA bi...  101     3e-27


>CDD:427606 pfam03947, Ribosomal_L2_C, Ribosomal Proteins L2, C-terminal 
domain.  
Length=123

 Score = 209 bits (536),  Expect = 2e-68, Method: Composition-based stats.
 Identities = 74/155 (48%), Positives = 89/155 (57%), Gaps = 34/155 (22%)

Query  212  GNCLPLHMIPVGTLIFNVGLRPGKGGQLCRSAGTYATVISKGSDTKTRDNEVETQEDGTE  271
            GN LPL  IP GT++ N+ L+PG GGQL RSAGTYA +++K                   
Sbjct  3    GNALPLKNIPEGTIVHNIELKPGDGGQLARSAGTYAQIVAKEGK----------------  46

Query  272  VQKPLSQREKQKQERIAQHVTIRLQSGEVRLIHKDCCATVGVASNPNHQYRQLGKAGRAR  331
                              +VT+RL SGEVRL+  DC AT+GV SN  H+ + LGKAGR R
Sbjct  47   ------------------YVTVRLPSGEVRLVSSDCRATIGVVSNGGHKNKPLGKAGRKR  88

Query  332  WLNIRPTVRGVAMNAADHPHGGGRGKSKGNVDPKS  366
            WL  RPTVRGVAMN  DHPHGGG G++ G   P S
Sbjct  89   WLGRRPTVRGVAMNPVDHPHGGGEGRTVGRKHPVS  123


>CDD:395129 pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RNA binding domain. 
 
Length=77

 Score = 101 bits (253),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 41/78 (53%), Positives = 52/78 (67%), Gaps = 2/78 (3%)

Query  106  GRNNTGRVTVRHRGGGHKRRIRIVDFARTAPG-PHLVERIEHDPGRSAHIALVRSQETQK  164
            GRNN GR+T RHRGGGHK++ R++DF R        V  IE+DP R+A IALV   E  +
Sbjct  1    GRNNPGRITSRHRGGGHKKKYRLIDFKRNKDDVKGKVVEIEYDPNRNAPIALV-KYEDGE  59

Query  165  LSYILAAEGMRAGDVVQS  182
              YILA EG++ GD V+S
Sbjct  60   KRYILAPEGLKVGDTVES  77



Lambda      K        H        a         alpha
   0.319    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00035435

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395129 pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RNA bi...   99     2e-27


>CDD:395129 pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RNA binding domain. 
 
Length=77

 Score =  99 bits (250),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 41/78 (53%), Positives = 52/78 (67%), Gaps = 2/78 (3%)

Query  106  GRNNTGRVTVRHRGGGHKRRIRIVDFARTAPG-PHLVERIEHDPGRSAHIALVRSQETQK  164
            GRNN GR+T RHRGGGHK++ R++DF R        V  IE+DP R+A IALV   E  +
Sbjct  1    GRNNPGRITSRHRGGGHKKKYRLIDFKRNKDDVKGKVVEIEYDPNRNAPIALV-KYEDGE  59

Query  165  LSYILAAEGMRAGDVVQS  182
              YILA EG++ GD V+S
Sbjct  60   KRYILAPEGLKVGDTVES  77



Lambda      K        H        a         alpha
   0.321    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 328900224


Query= TCONS_00035436

Length=839
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  96.0    2e-22
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  60.8    1e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 96.0 bits (239),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 57/238 (24%), Positives = 81/238 (34%), Gaps = 27/238 (11%)

Query  201  QIYFDKVHPSLPFLHRPRHLAAMNLAYNIRPAVC---LQYMTWCHAASVSDK------YS  251
             ++F   HP  P LHRP  L      ++         L        A  S+        S
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSS  61

Query  252  NLHAL-----FYQRARKYAELDEMKGFGESIVTLAHCQTWLLISTYEFKMMYFPRAWLSS  306
                      F+ RA      D    F     +L   Q  LL+  YE         W   
Sbjct  62   LTDEAADGIHFFLRALILIHED----FSSPSSSLWILQALLLLELYELGTGDRKLHWRYH  117

Query  307  GKATRLALMMGLNRLDGLGPEVKQSLPPPRDW-TEKEERRRTFWMAFCIDRYASAGTGWP  365
            G A RLA  +GL+R      +     P  + W  E E RRR FW  F +DR  S   G P
Sbjct  118  GLAIRLARSLGLHR------DPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRP  171

Query  366  VIIDERDIMTNLPA-SETSFVKSKPERTLRLSSVMRGEGIATLSSLASVV-LLSSMFG  421
             ++ + DI   LP   +  +     +        +  + I     L  +  +LS + G
Sbjct  172  PLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILG  229


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 60.8 bits (148),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 20/38 (53%), Positives = 26/38 (68%), Gaps = 0/38 (0%)

Query  50  ACVVCRRRKLRCDGKRPSCGTCSRLGHECAYDEVRKKS  87
           AC  CR+RK++CDGK+P+C  C + G EC Y    KKS
Sbjct  2   ACDNCRKRKVKCDGKKPACSRCIKNGLECTYSRKSKKS  39



Lambda      K        H        a         alpha
   0.317    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1068022416


Query= TCONS_00035437

Length=617
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  76.4    6e-16


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 76.4 bits (188),  Expect = 6e-16, Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 63/168 (38%), Gaps = 13/168 (8%)

Query  35   FYQRARKYAELDEMKGFGESIVTLAHCQTWLLISTYEFKMMYFPRAWLSSGKATRLALMM  94
            F+ RA      D    F     +L   Q  LL+  YE         W   G A RLA  +
Sbjct  72   FFLRALILIHED----FSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGLAIRLARSL  127

Query  95   GLNRLDGLGPEVKQSLPPPRDW-TEKEERRRTFWMAFCIDRYASAGTGWPVIIDERDIMT  153
            GL+R      +     P  + W  E E RRR FW  F +DR  S   G P ++ + DI  
Sbjct  128  GLHR------DPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPLLSDSDIDL  181

Query  154  NLPA-SETSFVKSKPERTLRLSSVMRGEGIATLSSLASVV-LLSSMFG  199
             LP   +  +     +        +  + I     L  +  +LS + G
Sbjct  182  PLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILG  229



Lambda      K        H        a         alpha
   0.317    0.130    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 784574700


Query= TCONS_00031205

Length=851
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  96.0    2e-22
CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  60.8    1e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 96.0 bits (239),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 57/238 (24%), Positives = 81/238 (34%), Gaps = 27/238 (11%)

Query  213  QIYFDKVHPSLPFLHRPRHLAAMNLAYNIRPAVC---LQYMTWCHAASVSDK------YS  263
             ++F   HP  P LHRP  L      ++         L        A  S+        S
Sbjct  2    DLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSSSS  61

Query  264  NLHAL-----FYQRARKYAELDEMKGFGESIVTLAHCQTWLLISTYEFKMMYFPRAWLSS  318
                      F+ RA      D    F     +L   Q  LL+  YE         W   
Sbjct  62   LTDEAADGIHFFLRALILIHED----FSSPSSSLWILQALLLLELYELGTGDRKLHWRYH  117

Query  319  GKATRLALMMGLNRLDGLGPEVKQSLPPPRDW-TEKEERRRTFWMAFCIDRYASAGTGWP  377
            G A RLA  +GL+R      +     P  + W  E E RRR FW  F +DR  S   G P
Sbjct  118  GLAIRLARSLGLHR------DPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRP  171

Query  378  VIIDERDIMTNLPA-SETSFVKSKPERTLRLSSVMRGEGIATLSSLASVV-LLSSMFG  433
             ++ + DI   LP   +  +     +        +  + I     L  +  +LS + G
Sbjct  172  PLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILG  229


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 60.8 bits (148),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 20/38 (53%), Positives = 26/38 (68%), Gaps = 0/38 (0%)

Query  62  ACVVCRRRKLRCDGKRPSCGTCSRLGHECAYDEVRKKS  99
           AC  CR+RK++CDGK+P+C  C + G EC Y    KKS
Sbjct  2   ACDNCRKRKVKCDGKKPACSRCIKNGLECTYSRKSKKS  39



Lambda      K        H        a         alpha
   0.317    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1085248584


Query= TCONS_00031206

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462526 pfam08584, Ribonuc_P_40, Ribonuclease P 40kDa (Rpp40) ...  256     1e-85


>CDD:462526 pfam08584, Ribonuc_P_40, Ribonuclease P 40kDa (Rpp40) subunit. 
 The tRNA processing enzyme ribonuclease P (RNase P) consists 
of an RNA molecule and at least eight protein subunits. 
Subunits hpop1, Rpp21, Rpp29, Rpp30, Rpp38, and Rpp40 (this 
entry) are involved in extensive, but weak, protein-protein 
interactions in the holoenzyme complex.
Length=277

 Score = 256 bits (656),  Expect = 1e-85, Method: Composition-based stats.
 Identities = 103/225 (46%), Positives = 133/225 (59%), Gaps = 12/225 (5%)

Query  82   SALLEGDFFNTYIKAGNILMIS-EGRSGSDNIYTLKD-GILRLELGKEVYERTGLTGKPI  139
            S LLE +F  TYIK G++  +S   R  SDN+  L   G L L L K+ YER GL GKP 
Sbjct  1    SELLEHEFLETYIKKGSVYALSYNTRIDSDNVVALLPNGTLILSLDKDTYERLGLEGKPS  60

Query  140  RSGGRKHAKERYLVEINLRLPSMLHGKKGFDRIVWAFKNVLDHSVAWLF-HDLAPGFTGI  198
            R GGRK  K+RY+VE++LR PS L GKKG++R+ WA KN L  S  +LF  D  P   G 
Sbjct  61   RFGGRK--KQRYVVELDLRDPSFLPGKKGYERVRWALKNRLTLSFDFLFSWDPTPSSGGA  118

Query  199  -SEGDPTLKGNHPQIIDCVVSRTH--YRDIITPSFSETTLTEASSESILKEDSQNLSEWL  255
             S    +L   + QII+C  S +    RD++ PS      +E S E+ L   +  L EWL
Sbjct  119  LSSILASLLK-NYQIIECQPSISTTTLRDVLCPSLELE--SEYSQENELSCSALELLEWL  175

Query  256  AMVALGSPRVSKDDEIDPYLSRYRVPDDGPVRTVDLVSLTWHGFL  300
             +V+LGSPRV+ DD IDPYLS Y  P+     T ++ SLTW GF+
Sbjct  176  GLVSLGSPRVNADDAIDPYLSTYSCPEPSEK-TGEVTSLTWTGFI  219



Lambda      K        H        a         alpha
   0.319    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00031207

Length=412
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462526 pfam08584, Ribonuc_P_40, Ribonuclease P 40kDa (Rpp40) ...  279     5e-93


>CDD:462526 pfam08584, Ribonuc_P_40, Ribonuclease P 40kDa (Rpp40) subunit. 
 The tRNA processing enzyme ribonuclease P (RNase P) consists 
of an RNA molecule and at least eight protein subunits. 
Subunits hpop1, Rpp21, Rpp29, Rpp30, Rpp38, and Rpp40 (this 
entry) are involved in extensive, but weak, protein-protein 
interactions in the holoenzyme complex.
Length=277

 Score = 279 bits (716),  Expect = 5e-93, Method: Composition-based stats.
 Identities = 117/309 (38%), Positives = 153/309 (50%), Gaps = 49/309 (16%)

Query  82   SALLEGDFFNTYIKAGTSFPFVFHDLVAKRSPLVLTSHPGNILMIS-EGRSGSDNIYTLK  140
            S LLE +F  TYIK                         G++  +S   R  SDN+  L 
Sbjct  1    SELLEHEFLETYIK------------------------KGSVYALSYNTRIDSDNVVALL  36

Query  141  D-GILRLELGKEVYERTGLTGKPIRSGGRKHAKERYLVEINLRLPSMLHGKKGFDRIVWA  199
              G L L L K+ YER GL GKP R GGRK  K+RY+VE++LR PS L GKKG++R+ WA
Sbjct  37   PNGTLILSLDKDTYERLGLEGKPSRFGGRK--KQRYVVELDLRDPSFLPGKKGYERVRWA  94

Query  200  FKNVLDHSVAWLF-HDLAPGFTGI-SEGDPTLKGNHPQIIDCVVSRTH--YRDIITPSFS  255
             KN L  S  +LF  D  P   G  S    +L   + QII+C  S +    RD++ PS  
Sbjct  95   LKNRLTLSFDFLFSWDPTPSSGGALSSILASLLK-NYQIIECQPSISTTTLRDVLCPSLE  153

Query  256  ETTLTEASSESILKEDSQNLSEWLAMVALGSPRVSKDDEIDPYLSRYRVPDDGPVRTVDL  315
                +E S E+ L   +  L EWL +V+LGSPRV+ DD IDPYLS Y  P+     T ++
Sbjct  154  LE--SEYSQENELSCSALELLEWLGLVSLGSPRVNADDAIDPYLSTYSCPEPSEK-TGEV  210

Query  316  VSLTWHGFLPASWILDLFITMLRETASKSSPASTWFALSSSALGREAVE-----------  364
             SLTW GF+P  WIL L   + R  A        WFAL+        V            
Sbjct  211  TSLTWTGFIPPEWILGLLEKLRRYVAEPKLAP--WFALTVHGFADSPVSWGEREHGFLKG  268

Query  365  AKDGYAIML  373
             ++ Y I++
Sbjct  269  GENDYTILI  277



Lambda      K        H        a         alpha
   0.319    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 501729466


Query= TCONS_00031208

Length=794
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463780 pfam13087, AAA_12, AAA domain. This family of domains ...  233     2e-72
CDD:404072 pfam13086, AAA_11, AAA domain. This family of domains ...  114     4e-29


>CDD:463780 pfam13087, AAA_12, AAA domain.  This family of domains contain 
a P-loop motif that is characteristic of the AAA superfamily. 
Many of the proteins in this family are conjugative transfer 
proteins.
Length=196

 Score = 233 bits (596),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 84/233 (36%), Positives = 119/233 (51%), Gaps = 41/233 (18%)

Query  450  LDVSLFKLLSDAHPESVVNLEHQYRMCEDIMVLSNNLIYSGRLKCGTPAVASRSLDLPNI  509
            LD SLF+ L +  P +VV L+ QYRM  +IM   + L Y G+LK G P+VA R L     
Sbjct  1    LDRSLFERLQELGPSAVVMLDTQYRMHPEIMEFPSKLFYGGKLKDG-PSVAERPLP----  55

Query  510  GGLKLHHINQLPQSSNQRQFCLGTNQGRCWLRDVLDPSAKNRFINTDTLGIPARDVANGT  569
                                             + DP     FI+ D  G    +   GT
Sbjct  56   -----------------------------DDFHLPDPLGPLVFIDVD--GSEEEESDGGT  84

Query  570  MIVNPTESSICAQLVESLVSCGIPA-RNIGVITFYRSQLSLLKQNLRRYL---PELEMHT  625
               N  E+ +  QLVE L+  G     +IGVIT YR+Q+ L+++ L+R L    E+E++T
Sbjct  85   SYSNEAEAELVVQLVEKLIKSGPEEPSDIGVITPYRAQVRLIRKLLKRKLGGKLEIEVNT  144

Query  626  ADKFQGRDKEVVLLSCVRSNVDNNVGDLLRDWRRINVAFTRARTKLLVIGSKS  678
             D FQGR+K+V++ SCVRSN    +G  L D RR+NVA TRA+  L+++G+  
Sbjct  145  VDGFQGREKDVIIFSCVRSNEKGGIG-FLSDPRRLNVALTRAKRGLIIVGNAK  196


>CDD:404072 pfam13086, AAA_11, AAA domain.  This family of domains contain 
a P-loop motif that is characteristic of the AAA superfamily. 
Many of the proteins in this family are conjugative transfer 
proteins.
Length=248

 Score = 114 bits (288),  Expect = 4e-29, Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 95/248 (38%), Gaps = 81/248 (33%)

Query  277  DQKRAIEKVMSARDYALVLGMPGTGKTTTIAHIIRALVAQ-------GKSVLLTSYTHTA  329
             Q+ AI   +S+  + L+ G PGTGKTTTI  +IR L++        G  +L+ + ++ A
Sbjct  1    SQREAIRSALSSSHFTLIQGPPGTGKTTTIVELIRQLLSYPATSAAAGPRILVCAPSNAA  60

Query  330  VDNILLKIRDDNF----RILRIGATAKVHTEVQQF-------------VDLAAV------  366
            VDNIL ++         +I+RIG  A +   V                 D   V      
Sbjct  61   VDNILERLLRKGQKYGPKIVRIGHPAAISEAVLPVSLDYLVESKLNNEEDAQIVKDISKE  120

Query  367  ------------PKSTVEELKASYE-----------------------------------  379
                         +  VE+L  S                                     
Sbjct  121  LEKLAKALRAFEKEIIVEKLLKSRNKDKSKLEQERRKLRSERKELRKELRRREQSLEREI  180

Query  380  --ESQVVATTCLGV-NHNIFNRRVFDYCIVDEASQITLPVCLGPIRMA-RTFILVGDHYQ  435
              E+Q+V +T  G  +  + +   FD  I+DEA+Q   P  L P+    +  +LVGD  Q
Sbjct  181  LDEAQIVCSTLSGAGSRLLSSLANFDVVIIDEAAQALEPSTLIPLLRGPKKVVLVGDPKQ  240

Query  436  LPPLVQNK  443
            LPP V +K
Sbjct  241  LPPTVISK  248



Lambda      K        H        a         alpha
   0.319    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1018606400


Query= TCONS_00035438

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462526 pfam08584, Ribonuc_P_40, Ribonuclease P 40kDa (Rpp40) ...  191     3e-61


>CDD:462526 pfam08584, Ribonuc_P_40, Ribonuclease P 40kDa (Rpp40) subunit. 
 The tRNA processing enzyme ribonuclease P (RNase P) consists 
of an RNA molecule and at least eight protein subunits. 
Subunits hpop1, Rpp21, Rpp29, Rpp30, Rpp38, and Rpp40 (this 
entry) are involved in extensive, but weak, protein-protein 
interactions in the holoenzyme complex.
Length=277

 Score = 191 bits (488),  Expect = 3e-61, Method: Composition-based stats.
 Identities = 71/161 (44%), Positives = 92/161 (57%), Gaps = 9/161 (6%)

Query  82   SALLEGDFFNTYIKAGNILMIS-EGRSGSDNIYTLKD-GILRLELGKEVYERTGLTGKPI  139
            S LLE +F  TYIK G++  +S   R  SDN+  L   G L L L K+ YER GL GKP 
Sbjct  1    SELLEHEFLETYIKKGSVYALSYNTRIDSDNVVALLPNGTLILSLDKDTYERLGLEGKPS  60

Query  140  RSGGRKHAKERYLVEINLRLPSMLHGKKGFDRIVWAFKNVLDHSVAWLF-HDLAPGFTGI  198
            R GGRK  K+RY+VE++LR PS L GKKG++R+ WA KN L  S  +LF  D  P   G 
Sbjct  61   RFGGRK--KQRYVVELDLRDPSFLPGKKGYERVRWALKNRLTLSFDFLFSWDPTPSSGGA  118

Query  199  -SEGDPTLKGNHPQIIDCVVSRTH--YRDIITPSFSETTLT  236
             S    +L   + QII+C  S +    RD++ PS    +  
Sbjct  119  LSSILASLLK-NYQIIECQPSISTTTLRDVLCPSLELESEY  158



Lambda      K        H        a         alpha
   0.320    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00031209

Length=367
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462526 pfam08584, Ribonuc_P_40, Ribonuclease P 40kDa (Rpp40) ...  293     3e-99


>CDD:462526 pfam08584, Ribonuc_P_40, Ribonuclease P 40kDa (Rpp40) subunit. 
 The tRNA processing enzyme ribonuclease P (RNase P) consists 
of an RNA molecule and at least eight protein subunits. 
Subunits hpop1, Rpp21, Rpp29, Rpp30, Rpp38, and Rpp40 (this 
entry) are involved in extensive, but weak, protein-protein 
interactions in the holoenzyme complex.
Length=277

 Score = 293 bits (752),  Expect = 3e-99, Method: Composition-based stats.
 Identities = 117/285 (41%), Positives = 153/285 (54%), Gaps = 25/285 (9%)

Query  68   SALLEGDFFNTYIKAGNILMIS-EGRSGSDNIYTLKD-GILRLELGKEVYERTGLTGKPI  125
            S LLE +F  TYIK G++  +S   R  SDN+  L   G L L L K+ YER GL GKP 
Sbjct  1    SELLEHEFLETYIKKGSVYALSYNTRIDSDNVVALLPNGTLILSLDKDTYERLGLEGKPS  60

Query  126  RSGGRKHAKERYLVEINLRLPSMLHGKKGFDRIVWAFKNVLDHSVAWLF-HDLAPGFTGI  184
            R GGRK  K+RY+VE++LR PS L GKKG++R+ WA KN L  S  +LF  D  P   G 
Sbjct  61   RFGGRK--KQRYVVELDLRDPSFLPGKKGYERVRWALKNRLTLSFDFLFSWDPTPSSGGA  118

Query  185  -SEGDPTLKGNHPQIIDCVVSRTH--YRDIITPSFSETTLTEASSESILKEDSQNLSEWL  241
             S    +L   + QII+C  S +    RD++ PS      +E S E+ L   +  L EWL
Sbjct  119  LSSILASLLK-NYQIIECQPSISTTTLRDVLCPSLELE--SEYSQENELSCSALELLEWL  175

Query  242  AMVALGSPRVSKDDEIDPYLSRYRVPDDGPVRTVDLVSLTWHGFLPASWILDLFITMLRE  301
             +V+LGSPRV+ DD IDPYLS Y  P+     T ++ SLTW GF+P  WIL L   + R 
Sbjct  176  GLVSLGSPRVNADDAIDPYLSTYSCPEPSEK-TGEVTSLTWTGFIPPEWILGLLEKLRRY  234

Query  302  TASKSSPASTWFALSSSALGREAVE-----------AKDGYAIML  335
             A        WFAL+        V             ++ Y I++
Sbjct  235  VAEPKLAP--WFALTVHGFADSPVSWGEREHGFLKGGENDYTILI  277



Lambda      K        H        a         alpha
   0.319    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438861420


Query= TCONS_00031210

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00035440

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00031211

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00031212

Length=1034
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459934 pfam00773, RNB, RNB domain. This domain is the catalyt...  377     4e-123
CDD:375054 pfam17216, Rrp44_CSD1, Rrp44-like cold shock domain        130     1e-35 
CDD:435792 pfam17215, Rrp44_S1, S1 domain. This domain correspond...  124     3e-34 
CDD:436091 pfam17849, OB_Dis3, Dis3-like cold-shock domain 2 (CSD...  92.7    3e-23 
CDD:433369 pfam13638, PIN_4, PIN domain. Members of this family o...  83.4    2e-19 


>CDD:459934 pfam00773, RNB, RNB domain.  This domain is the catalytic domain 
of ribonuclease II.
Length=314

 Score = 377 bits (969),  Expect = 4e-123, Method: Composition-based stats.
 Identities = 140/337 (42%), Positives = 185/337 (55%), Gaps = 26/337 (8%)

Query  520  RRDLRDILVCSIDPPGCQDIDDALHARPLPNGNFEVGVHIADVSHFVKPNNAMDLEASAR  579
            R+DLRD+   +IDP   +D+DDA+    LPNG + +GVHIADVSH+V P + +D EA  R
Sbjct  1    RKDLRDLPFITIDPADAKDLDDAISVEKLPNGGYRLGVHIADVSHYVPPGSPLDREARKR  60

Query  580  GTTVYLVDKRIDMLPHLLGTDLCSLKPYVERYAFSVLWEMTPNAEVVSAEFTKSVIRSRE  639
            GT+VYL D+ I MLP  L  DLCSL P  +R A SV   +  + EV S E   SVIRS+ 
Sbjct  61   GTSVYLPDRVIPMLPEKLSNDLCSLNPGEDRLALSVEITIDADGEVTSYEIYPSVIRSKA  120

Query  640  AFSYEQAQKRIDDPSQNDE---LTQSMRTLLRLSKILRQKRMDAGALNLASPEVRIETDS  696
              +YE+    ++      +   L + +R L  L+KILR KR+  GAL+L +PE ++  D 
Sbjct  121  RLTYEEVDDLLEGKDAEKDKPDLAEDLRLLYELAKILRAKRLQRGALDLDTPENKLILDE  180

Query  697  DEVGDPLTDVKTKAMLATNSLVEEFMLHANITVAAKIYDSFSQTALLRRHATPPPQNFEE  756
            + V D L   +T A    +SL+EEFML AN  VA  + +     AL R H  P  +    
Sbjct  181  EGVIDILIQERTDA----HSLIEEFMLLANEAVARHLQE-LGIPALYRVHPEPDLEKLNS  235

Query  757  LINQLSKKRNLELDVSSSRALADSLDRCVDPENPFFNTLVRILATRCMTSAEYFCAGAHA  816
            LI  L             + L+ SL++  D E      L+ IL  R M  AEY       
Sbjct  236  LIKLLQLLP-------DDKGLSKSLEKIKDDER-----LLSILLLRTMPRAEYS------  277

Query  817  ESEFRHYGLASPIYTHFTSPIRRYADLLVHRQLAAAI  853
                 H+GL   IYTHFTSPIRRY DL+VHRQL A +
Sbjct  278  PEPLGHFGLGLDIYTHFTSPIRRYPDLIVHRQLKALL  314


>CDD:375054 pfam17216, Rrp44_CSD1, Rrp44-like cold shock domain.  
Length=148

 Score = 130 bits (328),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 64/148 (43%), Positives = 96/148 (65%), Gaps = 14/148 (9%)

Query  256  YPEYYSMSKIMTGLRAGTLHQGVFNVSPYNYLEGSVNVAAFDKPLLILGRDNSNRAIAGD  315
            +PEYYS +++M GL+ G L+QG   +S YN+LEGSV++  F KP+LI+G+ N NRA  GD
Sbjct  4    FPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGD  63

Query  316  VVVIEVLPKDQWKSPSTKLVDEEAVTRNDNPEAE-----DNEE------VVTEKERKALQ  364
             V++E+LP+ +WK+PS+ ++D E    NDNP+ E     DN E      V+++K+R+ L 
Sbjct  64   QVIVELLPQSEWKAPSSIVLDSEHFDVNDNPDIEAGDDDDNNESSSNTTVISDKQRRLL-  122

Query  365  EEVKKAHGKHSEGRPQPTAKVVGVIKRN  392
               K A       + QPTAKVV + +R+
Sbjct  123  --AKDAMIAQRSKKIQPTAKVVYIQRRS  148


>CDD:435792 pfam17215, Rrp44_S1, S1 domain.  This domain corresponds to the 
S1 domain found at the C-terminus of ribonucleases such as 
yeast Rrp44.
Length=87

 Score = 124 bits (313),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 47/109 (43%), Positives = 65/109 (60%), Gaps = 22/109 (20%)

Query  919   IEEEGYVMRVFENGVVVFVPRFGIEGVVRLEDFVLPGESAVRSAEERRELLVRRESDFDG  978
              EEEGYV++VF NG+VVFVP+FGIEG++RLED       A                +FD 
Sbjct  1     SEEEGYVIKVFNNGIVVFVPKFGIEGLIRLEDLTGDEPEA----------------EFDA  44

Query  979   EEYTLRVSEKGHPEKERGVTVELFQRVKVNVSSVKEEGGRGAGKRRVRI  1027
             +EY+L   +KG  +K    TV +F +V+V V SVK+E     GKR+V++
Sbjct  45    DEYSLTFPDKGSGKK---RTVGVFDKVRVRVKSVKDENT---GKRKVKL  87


>CDD:436091 pfam17849, OB_Dis3, Dis3-like cold-shock domain 2 (CSD2).  This 
domain has an OB fold and is found in the Dis3l2 protein. 
This domain along with CSD1 binds to RNA.
Length=77

 Score = 92.7 bits (231),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 8/77 (10%)

Query  417  NVFVLPMDKRIPKIRVRTRQA--------SDLLGQRILVTIDAWDRDSRYPTGHFIRSLG  468
             V  +P DKRIP+IR+ T+ A         DL G+  +V ID W  +SRYP GH ++ LG
Sbjct  1    YVLFVPRDKRIPRIRIPTKSAPEEFLENPEDLEGKLFVVKIDDWPENSRYPLGHIVKVLG  60

Query  469  ELETKGAETEALLLEYD  485
            E+     ETEA+LLE  
Sbjct  61   EIGDIETETEAILLENG  77


>CDD:433369 pfam13638, PIN_4, PIN domain.  Members of this family of bacterial 
domains are predicted to be RNases (from similarities 
to 5'-exonucleases).
Length=131

 Score = 83.4 bits (207),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 37/144 (26%), Positives = 52/144 (36%), Gaps = 23/144 (16%)

Query  87   LIPDTNALLNGMDLFEHTGAFYDVIILQTVLEEL---KNQSLPLYNRLLSLIKTDEKRFY  143
             + DTN LL+  D   + G   DV+I  TVLEEL   K  S      L  L +    R+ 
Sbjct  1    YVLDTNVLLHDPDALFNFGEENDVVIPITVLEELDGLKKGSDESGRELARLARQA-NRWL  59

Query  144  LFFNEFRLETHVRRGQ------NESINDRNDRAVRAVAKWYSEHLRSTLKRGKKEKSVPA  197
                         RGQ           D+ND  + AVA +  E L               
Sbjct  60   DE--LLENNGGRLRGQTLDERLPPDPFDKNDNRILAVALYLKEELPD-----------RP  106

Query  198  IVVITDDKENLRKAKEEGVTALSL  221
            +++++ D     KA   G+ A   
Sbjct  107  VILVSKDINLRIKADALGIPAEDY  130



Lambda      K        H        a         alpha
   0.317    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1328091688


Query= TCONS_00031213

Length=1034
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459934 pfam00773, RNB, RNB domain. This domain is the catalyt...  377     4e-123
CDD:375054 pfam17216, Rrp44_CSD1, Rrp44-like cold shock domain        130     1e-35 
CDD:435792 pfam17215, Rrp44_S1, S1 domain. This domain correspond...  124     3e-34 
CDD:436091 pfam17849, OB_Dis3, Dis3-like cold-shock domain 2 (CSD...  92.7    3e-23 
CDD:433369 pfam13638, PIN_4, PIN domain. Members of this family o...  83.4    2e-19 


>CDD:459934 pfam00773, RNB, RNB domain.  This domain is the catalytic domain 
of ribonuclease II.
Length=314

 Score = 377 bits (969),  Expect = 4e-123, Method: Composition-based stats.
 Identities = 140/337 (42%), Positives = 185/337 (55%), Gaps = 26/337 (8%)

Query  520  RRDLRDILVCSIDPPGCQDIDDALHARPLPNGNFEVGVHIADVSHFVKPNNAMDLEASAR  579
            R+DLRD+   +IDP   +D+DDA+    LPNG + +GVHIADVSH+V P + +D EA  R
Sbjct  1    RKDLRDLPFITIDPADAKDLDDAISVEKLPNGGYRLGVHIADVSHYVPPGSPLDREARKR  60

Query  580  GTTVYLVDKRIDMLPHLLGTDLCSLKPYVERYAFSVLWEMTPNAEVVSAEFTKSVIRSRE  639
            GT+VYL D+ I MLP  L  DLCSL P  +R A SV   +  + EV S E   SVIRS+ 
Sbjct  61   GTSVYLPDRVIPMLPEKLSNDLCSLNPGEDRLALSVEITIDADGEVTSYEIYPSVIRSKA  120

Query  640  AFSYEQAQKRIDDPSQNDE---LTQSMRTLLRLSKILRQKRMDAGALNLASPEVRIETDS  696
              +YE+    ++      +   L + +R L  L+KILR KR+  GAL+L +PE ++  D 
Sbjct  121  RLTYEEVDDLLEGKDAEKDKPDLAEDLRLLYELAKILRAKRLQRGALDLDTPENKLILDE  180

Query  697  DEVGDPLTDVKTKAMLATNSLVEEFMLHANITVAAKIYDSFSQTALLRRHATPPPQNFEE  756
            + V D L   +T A    +SL+EEFML AN  VA  + +     AL R H  P  +    
Sbjct  181  EGVIDILIQERTDA----HSLIEEFMLLANEAVARHLQE-LGIPALYRVHPEPDLEKLNS  235

Query  757  LINQLSKKRNLELDVSSSRALADSLDRCVDPENPFFNTLVRILATRCMTSAEYFCAGAHA  816
            LI  L             + L+ SL++  D E      L+ IL  R M  AEY       
Sbjct  236  LIKLLQLLP-------DDKGLSKSLEKIKDDER-----LLSILLLRTMPRAEYS------  277

Query  817  ESEFRHYGLASPIYTHFTSPIRRYADLLVHRQLAAAI  853
                 H+GL   IYTHFTSPIRRY DL+VHRQL A +
Sbjct  278  PEPLGHFGLGLDIYTHFTSPIRRYPDLIVHRQLKALL  314


>CDD:375054 pfam17216, Rrp44_CSD1, Rrp44-like cold shock domain.  
Length=148

 Score = 130 bits (328),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 64/148 (43%), Positives = 96/148 (65%), Gaps = 14/148 (9%)

Query  256  YPEYYSMSKIMTGLRAGTLHQGVFNVSPYNYLEGSVNVAAFDKPLLILGRDNSNRAIAGD  315
            +PEYYS +++M GL+ G L+QG   +S YN+LEGSV++  F KP+LI+G+ N NRA  GD
Sbjct  4    FPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGD  63

Query  316  VVVIEVLPKDQWKSPSTKLVDEEAVTRNDNPEAE-----DNEE------VVTEKERKALQ  364
             V++E+LP+ +WK+PS+ ++D E    NDNP+ E     DN E      V+++K+R+ L 
Sbjct  64   QVIVELLPQSEWKAPSSIVLDSEHFDVNDNPDIEAGDDDDNNESSSNTTVISDKQRRLL-  122

Query  365  EEVKKAHGKHSEGRPQPTAKVVGVIKRN  392
               K A       + QPTAKVV + +R+
Sbjct  123  --AKDAMIAQRSKKIQPTAKVVYIQRRS  148


>CDD:435792 pfam17215, Rrp44_S1, S1 domain.  This domain corresponds to the 
S1 domain found at the C-terminus of ribonucleases such as 
yeast Rrp44.
Length=87

 Score = 124 bits (313),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 47/109 (43%), Positives = 65/109 (60%), Gaps = 22/109 (20%)

Query  919   IEEEGYVMRVFENGVVVFVPRFGIEGVVRLEDFVLPGESAVRSAEERRELLVRRESDFDG  978
              EEEGYV++VF NG+VVFVP+FGIEG++RLED       A                +FD 
Sbjct  1     SEEEGYVIKVFNNGIVVFVPKFGIEGLIRLEDLTGDEPEA----------------EFDA  44

Query  979   EEYTLRVSEKGHPEKERGVTVELFQRVKVNVSSVKEEGGRGAGKRRVRI  1027
             +EY+L   +KG  +K    TV +F +V+V V SVK+E     GKR+V++
Sbjct  45    DEYSLTFPDKGSGKK---RTVGVFDKVRVRVKSVKDENT---GKRKVKL  87


>CDD:436091 pfam17849, OB_Dis3, Dis3-like cold-shock domain 2 (CSD2).  This 
domain has an OB fold and is found in the Dis3l2 protein. 
This domain along with CSD1 binds to RNA.
Length=77

 Score = 92.7 bits (231),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 8/77 (10%)

Query  417  NVFVLPMDKRIPKIRVRTRQA--------SDLLGQRILVTIDAWDRDSRYPTGHFIRSLG  468
             V  +P DKRIP+IR+ T+ A         DL G+  +V ID W  +SRYP GH ++ LG
Sbjct  1    YVLFVPRDKRIPRIRIPTKSAPEEFLENPEDLEGKLFVVKIDDWPENSRYPLGHIVKVLG  60

Query  469  ELETKGAETEALLLEYD  485
            E+     ETEA+LLE  
Sbjct  61   EIGDIETETEAILLENG  77


>CDD:433369 pfam13638, PIN_4, PIN domain.  Members of this family of bacterial 
domains are predicted to be RNases (from similarities 
to 5'-exonucleases).
Length=131

 Score = 83.4 bits (207),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 37/144 (26%), Positives = 52/144 (36%), Gaps = 23/144 (16%)

Query  87   LIPDTNALLNGMDLFEHTGAFYDVIILQTVLEEL---KNQSLPLYNRLLSLIKTDEKRFY  143
             + DTN LL+  D   + G   DV+I  TVLEEL   K  S      L  L +    R+ 
Sbjct  1    YVLDTNVLLHDPDALFNFGEENDVVIPITVLEELDGLKKGSDESGRELARLARQA-NRWL  59

Query  144  LFFNEFRLETHVRRGQ------NESINDRNDRAVRAVAKWYSEHLRSTLKRGKKEKSVPA  197
                         RGQ           D+ND  + AVA +  E L               
Sbjct  60   DE--LLENNGGRLRGQTLDERLPPDPFDKNDNRILAVALYLKEELPD-----------RP  106

Query  198  IVVITDDKENLRKAKEEGVTALSL  221
            +++++ D     KA   G+ A   
Sbjct  107  VILVSKDINLRIKADALGIPAEDY  130



Lambda      K        H        a         alpha
   0.317    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1328091688


Query= TCONS_00035441

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367068 pfam02390, Methyltransf_4, Putative methyltransferase....  137     1e-41


>CDD:367068 pfam02390, Methyltransf_4, Putative methyltransferase.  This 
is a family of putative methyltransferases. The aligned region 
contains the GXGXG S-AdoMet binding site suggesting a putative 
methyltransferase activity.
Length=173

 Score = 137 bits (348),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 48/147 (33%), Positives = 65/147 (44%), Gaps = 23/147 (16%)

Query  80   YENISAIRSNTMKFFPNFFARHQLSKIFICFPDPHFKARKHKARIISETLNAEYAYALRP  139
             +N+  +  N +   PN+F    L KIFI FPDP  K R HK R++      EYA  L+P
Sbjct  50   LQNLRILCGNALDVLPNYFPPGSLQKIFINFPDPWPKKRHHKRRLLQPEFLKEYARVLKP  109

Query  140  GGLLYTITDVEEYHHWILRHFGVELGAEEESEEKSTSPNANANAGVRELFERVSEEELEK  199
            GG+L+  TDVEEY   +L+H                            LFER+  E    
Sbjct  110  GGVLHLATDVEEYAEEMLKHLAEHP-----------------------LFERLDLENDLA  146

Query  200  DECVRVMKEATEEGKKVARNKGNKYVA  226
               +  ++ ATE  +KV R  G  Y  
Sbjct  147  PGPLSPLRPATEYEQKVQRLGGPIYRL  173



Lambda      K        H        a         alpha
   0.314    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00035442

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367068 pfam02390, Methyltransf_4, Putative methyltransferase....  137     1e-41


>CDD:367068 pfam02390, Methyltransf_4, Putative methyltransferase.  This 
is a family of putative methyltransferases. The aligned region 
contains the GXGXG S-AdoMet binding site suggesting a putative 
methyltransferase activity.
Length=173

 Score = 137 bits (348),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 48/147 (33%), Positives = 65/147 (44%), Gaps = 23/147 (16%)

Query  80   YENISAIRSNTMKFFPNFFARHQLSKIFICFPDPHFKARKHKARIISETLNAEYAYALRP  139
             +N+  +  N +   PN+F    L KIFI FPDP  K R HK R++      EYA  L+P
Sbjct  50   LQNLRILCGNALDVLPNYFPPGSLQKIFINFPDPWPKKRHHKRRLLQPEFLKEYARVLKP  109

Query  140  GGLLYTITDVEEYHHWILRHFGVELGAEEESEEKSTSPNANANAGVRELFERVSEEELEK  199
            GG+L+  TDVEEY   +L+H                            LFER+  E    
Sbjct  110  GGVLHLATDVEEYAEEMLKHLAEHP-----------------------LFERLDLENDLA  146

Query  200  DECVRVMKEATEEGKKVARNKGNKYVA  226
               +  ++ ATE  +KV R  G  Y  
Sbjct  147  PGPLSPLRPATEYEQKVQRLGGPIYRL  173



Lambda      K        H        a         alpha
   0.314    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00031215

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367068 pfam02390, Methyltransf_4, Putative methyltransferase....  137     1e-41


>CDD:367068 pfam02390, Methyltransf_4, Putative methyltransferase.  This 
is a family of putative methyltransferases. The aligned region 
contains the GXGXG S-AdoMet binding site suggesting a putative 
methyltransferase activity.
Length=173

 Score = 137 bits (348),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 48/147 (33%), Positives = 65/147 (44%), Gaps = 23/147 (16%)

Query  80   YENISAIRSNTMKFFPNFFARHQLSKIFICFPDPHFKARKHKARIISETLNAEYAYALRP  139
             +N+  +  N +   PN+F    L KIFI FPDP  K R HK R++      EYA  L+P
Sbjct  50   LQNLRILCGNALDVLPNYFPPGSLQKIFINFPDPWPKKRHHKRRLLQPEFLKEYARVLKP  109

Query  140  GGLLYTITDVEEYHHWILRHFGVELGAEEESEEKSTSPNANANAGVRELFERVSEEELEK  199
            GG+L+  TDVEEY   +L+H                            LFER+  E    
Sbjct  110  GGVLHLATDVEEYAEEMLKHLAEHP-----------------------LFERLDLENDLA  146

Query  200  DECVRVMKEATEEGKKVARNKGNKYVA  226
               +  ++ ATE  +KV R  G  Y  
Sbjct  147  PGPLSPLRPATEYEQKVQRLGGPIYRL  173



Lambda      K        H        a         alpha
   0.314    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00031214

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367068 pfam02390, Methyltransf_4, Putative methyltransferase....  137     1e-41


>CDD:367068 pfam02390, Methyltransf_4, Putative methyltransferase.  This 
is a family of putative methyltransferases. The aligned region 
contains the GXGXG S-AdoMet binding site suggesting a putative 
methyltransferase activity.
Length=173

 Score = 137 bits (348),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 48/147 (33%), Positives = 65/147 (44%), Gaps = 23/147 (16%)

Query  80   YENISAIRSNTMKFFPNFFARHQLSKIFICFPDPHFKARKHKARIISETLNAEYAYALRP  139
             +N+  +  N +   PN+F    L KIFI FPDP  K R HK R++      EYA  L+P
Sbjct  50   LQNLRILCGNALDVLPNYFPPGSLQKIFINFPDPWPKKRHHKRRLLQPEFLKEYARVLKP  109

Query  140  GGLLYTITDVEEYHHWILRHFGVELGAEEESEEKSTSPNANANAGVRELFERVSEEELEK  199
            GG+L+  TDVEEY   +L+H                            LFER+  E    
Sbjct  110  GGVLHLATDVEEYAEEMLKHLAEHP-----------------------LFERLDLENDLA  146

Query  200  DECVRVMKEATEEGKKVARNKGNKYVA  226
               +  ++ ATE  +KV R  G  Y  
Sbjct  147  PGPLSPLRPATEYEQKVQRLGGPIYRL  173



Lambda      K        H        a         alpha
   0.314    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00035443

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465266 pfam16770, RTT107_BRCT_5, Regulator of Ty1 transpositi...  104     1e-29


>CDD:465266 pfam16770, RTT107_BRCT_5, Regulator of Ty1 transposition protein 
107 BRCT domain.  This is the fifth BRCT domain of regulator 
of Ty1 transposition protein 107 (RTT107). It is involved 
in binding phosphorylated histone H2A.
Length=91

 Score = 104 bits (263),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 33/64 (52%), Positives = 48/64 (75%), Gaps = 0/64 (0%)

Query  23  RQLRDLGIMVVQDARRCTHLAAPSILRTPKFVNALAYGPAIVNIEFITECLKKNELLNPD  82
           ++LR LGI +VQD  +C HL AP ILRT KF+ ALA+ P I++ +FIT+CLK+ +L + +
Sbjct  28  KKLRLLGIKIVQDPSKCNHLIAPKILRTEKFLCALAFAPYILSPDFITDCLKEGKLPDEE  87

Query  83  DFPL  86
           D+ L
Sbjct  88  DYLL  91



Lambda      K        H        a         alpha
   0.319    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00035444

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465266 pfam16770, RTT107_BRCT_5, Regulator of Ty1 transpositi...  104     1e-29


>CDD:465266 pfam16770, RTT107_BRCT_5, Regulator of Ty1 transposition protein 
107 BRCT domain.  This is the fifth BRCT domain of regulator 
of Ty1 transposition protein 107 (RTT107). It is involved 
in binding phosphorylated histone H2A.
Length=91

 Score = 104 bits (263),  Expect = 1e-29, Method: Composition-based stats.
 Identities = 33/64 (52%), Positives = 48/64 (75%), Gaps = 0/64 (0%)

Query  23  RQLRDLGIMVVQDARRCTHLAAPSILRTPKFVNALAYGPAIVNIEFITECLKKNELLNPD  82
           ++LR LGI +VQD  +C HL AP ILRT KF+ ALA+ P I++ +FIT+CLK+ +L + +
Sbjct  28  KKLRLLGIKIVQDPSKCNHLIAPKILRTEKFLCALAFAPYILSPDFITDCLKEGKLPDEE  87

Query  83  DFPL  86
           D+ L
Sbjct  88  DYLL  91



Lambda      K        H        a         alpha
   0.319    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 252684396


Query= TCONS_00031216

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367068 pfam02390, Methyltransf_4, Putative methyltransferase....  137     1e-41


>CDD:367068 pfam02390, Methyltransf_4, Putative methyltransferase.  This 
is a family of putative methyltransferases. The aligned region 
contains the GXGXG S-AdoMet binding site suggesting a putative 
methyltransferase activity.
Length=173

 Score = 137 bits (348),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 48/147 (33%), Positives = 65/147 (44%), Gaps = 23/147 (16%)

Query  80   YENISAIRSNTMKFFPNFFARHQLSKIFICFPDPHFKARKHKARIISETLNAEYAYALRP  139
             +N+  +  N +   PN+F    L KIFI FPDP  K R HK R++      EYA  L+P
Sbjct  50   LQNLRILCGNALDVLPNYFPPGSLQKIFINFPDPWPKKRHHKRRLLQPEFLKEYARVLKP  109

Query  140  GGLLYTITDVEEYHHWILRHFGVELGAEEESEEKSTSPNANANAGVRELFERVSEEELEK  199
            GG+L+  TDVEEY   +L+H                            LFER+  E    
Sbjct  110  GGVLHLATDVEEYAEEMLKHLAEHP-----------------------LFERLDLENDLA  146

Query  200  DECVRVMKEATEEGKKVARNKGNKYVA  226
               +  ++ ATE  +KV R  G  Y  
Sbjct  147  PGPLSPLRPATEYEQKVQRLGGPIYRL  173



Lambda      K        H        a         alpha
   0.314    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00031217

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367068 pfam02390, Methyltransf_4, Putative methyltransferase....  137     1e-41


>CDD:367068 pfam02390, Methyltransf_4, Putative methyltransferase.  This 
is a family of putative methyltransferases. The aligned region 
contains the GXGXG S-AdoMet binding site suggesting a putative 
methyltransferase activity.
Length=173

 Score = 137 bits (348),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 48/147 (33%), Positives = 65/147 (44%), Gaps = 23/147 (16%)

Query  80   YENISAIRSNTMKFFPNFFARHQLSKIFICFPDPHFKARKHKARIISETLNAEYAYALRP  139
             +N+  +  N +   PN+F    L KIFI FPDP  K R HK R++      EYA  L+P
Sbjct  50   LQNLRILCGNALDVLPNYFPPGSLQKIFINFPDPWPKKRHHKRRLLQPEFLKEYARVLKP  109

Query  140  GGLLYTITDVEEYHHWILRHFGVELGAEEESEEKSTSPNANANAGVRELFERVSEEELEK  199
            GG+L+  TDVEEY   +L+H                            LFER+  E    
Sbjct  110  GGVLHLATDVEEYAEEMLKHLAEHP-----------------------LFERLDLENDLA  146

Query  200  DECVRVMKEATEEGKKVARNKGNKYVA  226
               +  ++ ATE  +KV R  G  Y  
Sbjct  147  PGPLSPLRPATEYEQKVQRLGGPIYRL  173



Lambda      K        H        a         alpha
   0.314    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00031218

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367068 pfam02390, Methyltransf_4, Putative methyltransferase....  137     1e-41


>CDD:367068 pfam02390, Methyltransf_4, Putative methyltransferase.  This 
is a family of putative methyltransferases. The aligned region 
contains the GXGXG S-AdoMet binding site suggesting a putative 
methyltransferase activity.
Length=173

 Score = 137 bits (348),  Expect = 1e-41, Method: Composition-based stats.
 Identities = 48/147 (33%), Positives = 65/147 (44%), Gaps = 23/147 (16%)

Query  80   YENISAIRSNTMKFFPNFFARHQLSKIFICFPDPHFKARKHKARIISETLNAEYAYALRP  139
             +N+  +  N +   PN+F    L KIFI FPDP  K R HK R++      EYA  L+P
Sbjct  50   LQNLRILCGNALDVLPNYFPPGSLQKIFINFPDPWPKKRHHKRRLLQPEFLKEYARVLKP  109

Query  140  GGLLYTITDVEEYHHWILRHFGVELGAEEESEEKSTSPNANANAGVRELFERVSEEELEK  199
            GG+L+  TDVEEY   +L+H                            LFER+  E    
Sbjct  110  GGVLHLATDVEEYAEEMLKHLAEHP-----------------------LFERLDLENDLA  146

Query  200  DECVRVMKEATEEGKKVARNKGNKYVA  226
               +  ++ ATE  +KV R  G  Y  
Sbjct  147  PGPLSPLRPATEYEQKVQRLGGPIYRL  173



Lambda      K        H        a         alpha
   0.314    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00035445

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463687 pfam12738, PTCB-BRCT, twin BRCT domain. This is a BRCT...  92.7    5e-24


>CDD:463687 pfam12738, PTCB-BRCT, twin BRCT domain.  This is a BRCT domain 
that appears in duplicate in most member sequences. BRCT domains 
are peptide- and phosphopeptide-binding modules. BRCT 
domains are present in a number of proteins involved in DNA 
checkpoint controls and DNA repair.
Length=63

 Score = 92.7 bits (231),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 0/63 (0%)

Query  95   LKISLSNYVGEARIYLENLITAAGAECTKTLKQENTHLVTAHGHSEKCAAAKEWGLHVVN  154
            L I ++ + G+ R  L+ LI A GAE TK L +  THL+   G  EK   AKEWG+ VV+
Sbjct  1    LVICVTGFDGDDREGLQKLIEAMGAEYTKDLTKSVTHLICKSGEGEKYEKAKEWGIPVVS  60

Query  155  HLW  157
             LW
Sbjct  61   PLW  63



Lambda      K        H        a         alpha
   0.315    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 558268256


Query= TCONS_00031219

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0571    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00031220

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00031221

Length=445


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00031222

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        82.3    3e-20


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 82.3 bits (204),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query  131  KLSNWGNLATGAVARTAAGFVMMPVTVLKVRYESD----YYAYRSLYSAGRDIVRTEGVR  186
            +LS   +L  G +A   A  V  P+ V+K R +          R +    + I + EG+R
Sbjct  2    ELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIR  61

Query  187  GLFSGFGATAARDAPYAGLYVLFYEQLKRRL  217
            GL+ G      R AP A +Y   YE LKR L
Sbjct  62   GLYKGLLPNLLRVAPAAAIYFGTYETLKRLL  92


 Score = 80.0 bits (198),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 28/88 (32%), Positives = 48/88 (55%), Gaps = 4/88 (5%)

Query  232  STSSSSINFVSGGLAAGLATAITNPFDAVKTRLQLMP----GKYGNMIRAVRLMIREDGV  287
            S  S   + ++GG+A  +A  +T P D VKTRLQ+       K   ++   + + +E+G+
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGI  60

Query  288  RSLFGGLGLRITRKALSSALAWTVYEEL  315
            R L+ GL   + R A ++A+ +  YE L
Sbjct  61   RGLYKGLLPNLLRVAPAAAIYFGTYETL  88


 Score = 62.7 bits (153),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 42/86 (49%), Gaps = 6/86 (7%)

Query  24   HFAAGLCSGLTSSILLQPADLLKTRVQ-----QSQKTASLLPTIKTILSSPHPIRGLWRG  78
               AG  +G  +  +  P D++KTR+Q        K   +L   K I      IRGL++G
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKE-EGIRGLYKG  66

Query  79   TLPSALRTGFGSALYFTSLNALRQGL  104
             LP+ LR    +A+YF +   L++ L
Sbjct  67   LLPNLLRVAPAAAIYFGTYETLKRLL  92



Lambda      K        H        a         alpha
   0.317    0.129    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00031223

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        82.3    3e-20


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 82.3 bits (204),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query  131  KLSNWGNLATGAVARTAAGFVMMPVTVLKVRYESD----YYAYRSLYSAGRDIVRTEGVR  186
            +LS   +L  G +A   A  V  P+ V+K R +          R +    + I + EG+R
Sbjct  2    ELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIR  61

Query  187  GLFSGFGATAARDAPYAGLYVLFYEQLKRRL  217
            GL+ G      R AP A +Y   YE LKR L
Sbjct  62   GLYKGLLPNLLRVAPAAAIYFGTYETLKRLL  92


 Score = 80.0 bits (198),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 28/88 (32%), Positives = 48/88 (55%), Gaps = 4/88 (5%)

Query  232  STSSSSINFVSGGLAAGLATAITNPFDAVKTRLQLMP----GKYGNMIRAVRLMIREDGV  287
            S  S   + ++GG+A  +A  +T P D VKTRLQ+       K   ++   + + +E+G+
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGI  60

Query  288  RSLFGGLGLRITRKALSSALAWTVYEEL  315
            R L+ GL   + R A ++A+ +  YE L
Sbjct  61   RGLYKGLLPNLLRVAPAAAIYFGTYETL  88


 Score = 62.7 bits (153),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 42/86 (49%), Gaps = 6/86 (7%)

Query  24   HFAAGLCSGLTSSILLQPADLLKTRVQ-----QSQKTASLLPTIKTILSSPHPIRGLWRG  78
               AG  +G  +  +  P D++KTR+Q        K   +L   K I      IRGL++G
Sbjct  8    SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKE-EGIRGLYKG  66

Query  79   TLPSALRTGFGSALYFTSLNALRQGL  104
             LP+ LR    +A+YF +   L++ L
Sbjct  67   LLPNLLRVAPAAAIYFGTYETLKRLL  92



Lambda      K        H        a         alpha
   0.317    0.129    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00031224

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein        81.9    3e-20


>CDD:395101 pfam00153, Mito_carr, Mitochondrial carrier protein.  
Length=96

 Score = 81.9 bits (203),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 30/91 (33%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query  120  KLSNWGNLATGAVARTAAGFVMMPVTVLKVRYESD----YYAYRSLYSAGRDIVRTEGVR  175
            +LS   +L  G +A   A  V  P+ V+K R +          R +    + I + EG+R
Sbjct  2    ELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGIR  61

Query  176  GLFSGFGATAARDAPYAGLYVLFYEQLKRRL  206
            GL+ G      R AP A +Y   YE LKR L
Sbjct  62   GLYKGLLPNLLRVAPAAAIYFGTYETLKRLL  92


 Score = 79.6 bits (197),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 28/88 (32%), Positives = 48/88 (55%), Gaps = 4/88 (5%)

Query  221  STSSSSINFVSGGLAAGLATAITNPFDAVKTRLQLMP----GKYGNMIRAVRLMIREDGV  276
            S  S   + ++GG+A  +A  +T P D VKTRLQ+       K   ++   + + +E+G+
Sbjct  1    SELSFLASLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKEEGI  60

Query  277  RSLFGGLGLRITRKALSSALAWTVYEEL  304
            R L+ GL   + R A ++A+ +  YE L
Sbjct  61   RGLYKGLLPNLLRVAPAAAIYFGTYETL  88


 Score = 62.7 bits (153),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 42/86 (49%), Gaps = 6/86 (7%)

Query  13  HFAAGLCSGLTSSILLQPADLLKTRVQ-----QSQKTASLLPTIKTILSSPHPIRGLWRG  67
              AG  +G  +  +  P D++KTR+Q        K   +L   K I      IRGL++G
Sbjct  8   SLLAGGIAGAIAVTVTYPLDVVKTRLQVQGGSGKSKGRGILDCFKKIYKE-EGIRGLYKG  66

Query  68  TLPSALRTGFGSALYFTSLNALRQGL  93
            LP+ LR    +A+YF +   L++ L
Sbjct  67  LLPNLLRVAPAAAIYFGTYETLKRLL  92



Lambda      K        H        a         alpha
   0.319    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00031225

Length=331


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00031226

Length=362


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00031227

Length=311


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00031228

Length=362


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00031229

Length=362


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00031230

Length=349


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00035446

Length=362


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00031231

Length=362


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00035447

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461160 pfam04078, Rcd1, Cell differentiation family, Rcd1-lik...  400     5e-142


>CDD:461160 pfam04078, Rcd1, Cell differentiation family, Rcd1-like.  Two 
of the members in this family have been characterized as being 
involved in regulation of Ste11 regulated sex genes. Mammalian 
Rcd1 is a novel transcriptional cofactor that mediates 
retinoic acid-induced cell differentiation.
Length=259

 Score = 400 bits (1030),  Expect = 5e-142, Method: Composition-based stats.
 Identities = 160/214 (75%), Positives = 181/214 (85%), Gaps = 0/214 (0%)

Query  123  WIAELLDPNRREAALMELSKKREQVPELALVIWHSFGVMTALLQEIISVYPLLNPSQLTA  182
             I +L DP +RE AL+ELSKKRE  P+LA ++WHSFG M ALLQEI+S+YPLL+P  LT 
Sbjct  1    LILDLTDPEKREEALLELSKKRESFPDLAPLLWHSFGTMAALLQEIVSIYPLLSPPTLTE  60

Query  183  AASNRVCNALALLQCVASHNETRTLFLNAHIPLFLYPFLNTTSKSRPFEYLRLTSLGVIG  242
              SNRVCNALALLQCVASH ETR+LFL AHIPL+LYPFLNTTSKSRPFEYLRLTSLGVIG
Sbjct  61   RESNRVCNALALLQCVASHPETRSLFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIG  120

Query  243  ALVKNDSSDVINFLLTTEIIPLCLRIMETGSELSKTVAIFIVQKILLDDIGLAYICATYE  302
            ALVK D  +VINFLL TEI+PLCLRIME+GSELSKTVA FI+QKIL DD GL YIC T +
Sbjct  121  ALVKTDDPEVINFLLDTEIVPLCLRIMESGSELSKTVATFILQKILSDDDGLNYICQTPD  180

Query  303  RFYAVGTVLSNMVTQLVEQQTVRLLKHVVRCFLR  336
            RF AV  VL++MV QLVEQ + RLLKHV+RC+LR
Sbjct  181  RFSAVAQVLNSMVVQLVEQPSPRLLKHVIRCYLR  214



Lambda      K        H        a         alpha
   0.321    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00031232

Length=172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461160 pfam04078, Rcd1, Cell differentiation family, Rcd1-lik...  64.9    1e-13


>CDD:461160 pfam04078, Rcd1, Cell differentiation family, Rcd1-like.  Two 
of the members in this family have been characterized as being 
involved in regulation of Ste11 regulated sex genes. Mammalian 
Rcd1 is a novel transcriptional cofactor that mediates 
retinoic acid-induced cell differentiation.
Length=259

 Score = 64.9 bits (159),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 23/39 (59%), Positives = 30/39 (77%), Gaps = 0/39 (0%)

Query  123  WIAELLDPNRREAALMELSKKREQVPELALVIWHSFGMI  161
             I +L DP +RE AL+ELSKKRE  P+LA ++WHSFG +
Sbjct  1    LILDLTDPEKREEALLELSKKRESFPDLAPLLWHSFGTM  39



Lambda      K        H        a         alpha
   0.316    0.125    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00031233

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461160 pfam04078, Rcd1, Cell differentiation family, Rcd1-lik...  408     4e-147


>CDD:461160 pfam04078, Rcd1, Cell differentiation family, Rcd1-like.  Two 
of the members in this family have been characterized as being 
involved in regulation of Ste11 regulated sex genes. Mammalian 
Rcd1 is a novel transcriptional cofactor that mediates 
retinoic acid-induced cell differentiation.
Length=259

 Score = 408 bits (1052),  Expect = 4e-147, Method: Composition-based stats.
 Identities = 170/221 (77%), Positives = 188/221 (85%), Gaps = 0/221 (0%)

Query  1    MTALLQEIISVYPLLNPSQLTAAASNRVCNALALLQCVASHNETRTLFLNAHIPLFLYPF  60
            M ALLQEI+S+YPLL+P  LT   SNRVCNALALLQCVASH ETR+LFL AHIPL+LYPF
Sbjct  39   MAALLQEIVSIYPLLSPPTLTERESNRVCNALALLQCVASHPETRSLFLRAHIPLYLYPF  98

Query  61   LNTTSKSRPFEYLRLTSLGVIGALVKNDSSDVINFLLTTEIIPLCLRIMETGSELSKTVA  120
            LNTTSKSRPFEYLRLTSLGVIGALVK D  +VINFLL TEI+PLCLRIME+GSELSKTVA
Sbjct  99   LNTTSKSRPFEYLRLTSLGVIGALVKTDDPEVINFLLDTEIVPLCLRIMESGSELSKTVA  158

Query  121  IFIVQKILLDDIGLAYICATYERFYAVGTVLSNMVTQLVEQQTVRLLKHVVRCFLRLSDN  180
             FI+QKIL DD GL YIC T +RF AV  VL++MV QLVEQ + RLLKHV+RC+LRLSDN
Sbjct  159  TFILQKILSDDDGLNYICQTPDRFSAVAQVLNSMVVQLVEQPSPRLLKHVIRCYLRLSDN  218

Query  181  SRAREALRQCLPEPLRDATFSSVLRDDAATKRCLAQLLINL  221
             RAREALR CLPE L+D TFSS+L+DD  TKR L QLL NL
Sbjct  219  PRAREALRSCLPELLKDGTFSSLLKDDPETKRWLKQLLHNL  259



Lambda      K        H        a         alpha
   0.324    0.136    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00031234

Length=172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461160 pfam04078, Rcd1, Cell differentiation family, Rcd1-lik...  64.9    1e-13


>CDD:461160 pfam04078, Rcd1, Cell differentiation family, Rcd1-like.  Two 
of the members in this family have been characterized as being 
involved in regulation of Ste11 regulated sex genes. Mammalian 
Rcd1 is a novel transcriptional cofactor that mediates 
retinoic acid-induced cell differentiation.
Length=259

 Score = 64.9 bits (159),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 23/39 (59%), Positives = 30/39 (77%), Gaps = 0/39 (0%)

Query  123  WIAELLDPNRREAALMELSKKREQVPELALVIWHSFGMI  161
             I +L DP +RE AL+ELSKKRE  P+LA ++WHSFG +
Sbjct  1    LILDLTDPEKREEALLELSKKRESFPDLAPLLWHSFGTM  39



Lambda      K        H        a         alpha
   0.316    0.125    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00031235

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461160 pfam04078, Rcd1, Cell differentiation family, Rcd1-lik...  394     1e-139


>CDD:461160 pfam04078, Rcd1, Cell differentiation family, Rcd1-like.  Two 
of the members in this family have been characterized as being 
involved in regulation of Ste11 regulated sex genes. Mammalian 
Rcd1 is a novel transcriptional cofactor that mediates 
retinoic acid-induced cell differentiation.
Length=259

 Score = 394 bits (1014),  Expect = 1e-139, Method: Composition-based stats.
 Identities = 163/230 (71%), Positives = 183/230 (80%), Gaps = 16/230 (7%)

Query  123  WIAELLDPNRREAALMELSKKREQVPELALVIWHSFGVMTALLQEIISVYPLLNPSQLTA  182
             I +L DP +RE AL+ELSKKRE  P+LA ++WHSFG M ALLQEI+S+YPLL+P  LT 
Sbjct  1    LILDLTDPEKREEALLELSKKRESFPDLAPLLWHSFGTMAALLQEIVSIYPLLSPPTLTE  60

Query  183  AASNRVCNALALLQCVASHNETRTLFLNAHIPLFLYPFLNTTSKSRPFEYLRLTSLGVIG  242
              SNRVCNALALLQCVASH ETR+LFL AHIPL+LYPFLNTTSKSRPFEYLRLTSLGVIG
Sbjct  61   RESNRVCNALALLQCVASHPETRSLFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIG  120

Query  243  AL----------------IIPLCLRIMETGSELSKTVAIFIVQKILLDDIGLAYICATYE  286
            AL                I+PLCLRIME+GSELSKTVA FI+QKIL DD GL YIC T +
Sbjct  121  ALVKTDDPEVINFLLDTEIVPLCLRIMESGSELSKTVATFILQKILSDDDGLNYICQTPD  180

Query  287  RFYAVGTVLSNMVTQLVEQQTVRLLKHVVRCFLRLSDNSRAREALRQCLP  336
            RF AV  VL++MV QLVEQ + RLLKHV+RC+LRLSDN RAREALR CLP
Sbjct  181  RFSAVAQVLNSMVVQLVEQPSPRLLKHVIRCYLRLSDNPRAREALRSCLP  230



Lambda      K        H        a         alpha
   0.321    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00031236

Length=836
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464007 pfam13868, TPH, Trichohyalin-plectin-homology domain. ...  73.4    2e-14
CDD:461709 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisa...  58.9    9e-11


>CDD:464007 pfam13868, TPH, Trichohyalin-plectin-homology domain.  This family 
is a mixtrue of two different families of eukaryotic proteins. 
Trichoplein or mitostatin, was first defined as a meiosis-specific 
nuclear structural protein. It has since been 
linked with mitochondrial movement. It is associated with 
the mitochondrial outer membrane, and over-expression leads 
to reduction in mitochondrial motility whereas lack of it enhances 
mitochondrial movement. The activity appears to be mediated 
through binding the mitochondria to the actin intermediate 
filaments (IFs). The family is in the trichohyalin-plectin-homology 
domain.
Length=341

 Score = 73.4 bits (181),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 39/152 (26%), Positives = 70/152 (46%), Gaps = 12/152 (8%)

Query  274  EKILRDRIVEHVLPVIEREEEALQRKRAKREKELLNMQLLAGAKRSGRLAQKAERERQER  333
            E+   D IVE     I+ E++A   ++ +++++L         +++     + E ER+E 
Sbjct  99   EREQMDEIVER----IQEEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKEEEREED  154

Query  334  EAAEAARKYEAELAAARKEEERLRKMEEERRTRMMTREQRIKERERKRLLHEAELQRIAE  393
            E      K +AE    R+ E    + E+ER    +  +Q  K ++ K    E   +   E
Sbjct  155  ERILEYLKEKAEREEEREAEREEIEEEKEREIARLRAQQE-KAQDEKAERDELRAKLYQE  213

Query  394  EQERLERGESRLSERQLKAEMEKQRKSLEELQ  425
            EQER ER       ++ + E EK+ +  +ELQ
Sbjct  214  EQERKER-------QKEREEAEKKARQRQELQ  238


 Score = 70.3 bits (173),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 38/186 (20%)

Query  274  EKILRDRIVEHVLPVIEREEE-ALQRKRAKREKELLNMQLLAGAKRSGRLAQKAERE---  329
            E+   +RI+E++    EREEE   +R+  + EKE    +L A  ++     +KAER+   
Sbjct  150  EREEDERILEYLKEKAEREEEREAEREEIEEEKEREIARLRAQQEK--AQDEKAERDELR  207

Query  330  -------------RQEREAAEAARKYEAELAAARKEEERLRKM--------EEERRTRMM  368
                         ++ERE AE   +   EL  AR+E+  L++         EEE   RM+
Sbjct  208  AKLYQEEQERKERQKEREEAEKKARQRQELQQAREEQIELKERRLAEEAEREEEEFERML  267

Query  369  -------TREQRIKERERKRLL-HEAELQRIAEEQERL---ERGESRLSERQLKAEMEKQ  417
                     EQ   E+ R + L H  EL++  EE+E     ER E      +L+ E  ++
Sbjct  268  RKQAEDEEIEQEEAEKRRMKRLEHRRELEKQIEEREEQRAAEREEELEEGERLREEEAER  327

Query  418  RKSLEE  423
            R+ +EE
Sbjct  328  RERIEE  333


 Score = 63.8 bits (156),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 65/126 (52%), Gaps = 11/126 (9%)

Query  308  LNMQLLAGAKRSGRLAQKAERERQEREAAEAARKYEAELAAARK------EEERLRKMEE  361
            LN +LLA      R AQ AE++R + E  E  R+ +  +   R+      EE+   + EE
Sbjct  11   LNSKLLAAKCNKERDAQIAEKKRIKAEEKEEERRLDEMMEEERERALEEEEEKEEERKEE  70

Query  362  ERRTRMMTREQRIKERERKRLLHEAELQRIAEEQERLERGESRLSERQLKAE--MEKQRK  419
             +R R    EQ I+ERE+KR   E   +++ E ++  E  E    E Q +AE  +EKQR+
Sbjct  71   RKRYRQELEEQ-IEEREQKRQ--EEYEEKLQEREQMDEIVERIQEEDQAEAEEKLEKQRQ  127

Query  420  SLEELQ  425
              EE+ 
Sbjct  128  LREEID  133


>CDD:461709 pfam05672, MAP7, MAP7 (E-MAP-115) family.  The organisation of 
microtubules varies with the cell type and is presumably controlled 
by tissue-specific microtubule-associated proteins 
(MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been 
identified as a microtubule-stabilizing protein predominantly 
expressed in cell lines of epithelial origin. The binding 
of this microtubule associated protein is nucleotide independent.
Length=153

 Score = 58.9 bits (143),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query  312  LLAGAKRSGRLAQKAERERQEREAAEAARKYEAELAAARKEEERLRKMEEERRTRMMTRE  371
            +LA  +R  R   + ERE QER   E   +   E    R EEER R+ EE RR   +  E
Sbjct  15   ILAEKRRQARE--QREREEQERLEKEEEERLRKEELRRRAEEERARREEEARR---LEEE  69

Query  372  QRIKERERKRLLHEAELQRIAEEQERLERGESRLSERQLKA--EMEKQRKSLEEL  424
            +R +E ER+R   E   +R   EQE  ER + +  E + KA  E E+QR+  E++
Sbjct  70   RRREEEERQRKAEEEAEEREQREQEEQERLQKQKEEAEAKAREEAERQRQEREKI  124



Lambda      K        H        a         alpha
   0.312    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1063715874


Query= TCONS_00035448

Length=126
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461160 pfam04078, Rcd1, Cell differentiation family, Rcd1-lik...  200     7e-67


>CDD:461160 pfam04078, Rcd1, Cell differentiation family, Rcd1-like.  Two 
of the members in this family have been characterized as being 
involved in regulation of Ste11 regulated sex genes. Mammalian 
Rcd1 is a novel transcriptional cofactor that mediates 
retinoic acid-induced cell differentiation.
Length=259

 Score = 200 bits (512),  Expect = 7e-67, Method: Composition-based stats.
 Identities = 81/113 (72%), Positives = 92/113 (81%), Gaps = 0/113 (0%)

Query  1    METGSELSKTVAIFIVQKILLDDIGLAYICATYERFYAVGTVLSNMVTQLVEQQTVRLLK  60
            ME+GSELSKTVA FI+QKIL DD GL YIC T +RF AV  VL++MV QLVEQ + RLLK
Sbjct  147  MESGSELSKTVATFILQKILSDDDGLNYICQTPDRFSAVAQVLNSMVVQLVEQPSPRLLK  206

Query  61   HVVRCFLRLSDNSRAREALRQCLPEPLRDATFSSVLRDDAATKRCLAQLLINL  113
            HV+RC+LRLSDN RAREALR CLPE L+D TFSS+L+DD  TKR L QLL NL
Sbjct  207  HVIRCYLRLSDNPRAREALRSCLPELLKDGTFSSLLKDDPETKRWLKQLLHNL  259



Lambda      K        H        a         alpha
   0.323    0.135    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00031237

Length=68
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461160 pfam04078, Rcd1, Cell differentiation family, Rcd1-lik...  125     2e-38


>CDD:461160 pfam04078, Rcd1, Cell differentiation family, Rcd1-like.  Two 
of the members in this family have been characterized as being 
involved in regulation of Ste11 regulated sex genes. Mammalian 
Rcd1 is a novel transcriptional cofactor that mediates 
retinoic acid-induced cell differentiation.
Length=259

 Score = 125 bits (317),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 48/68 (71%), Positives = 56/68 (82%), Gaps = 0/68 (0%)

Query  1    METGSELSKTVAIFIVQKILLDDIGLAYICATYERFYAVGTVLSNMVTQLVEQQTVRLLK  60
            ME+GSELSKTVA FI+QKIL DD GL YIC T +RF AV  VL++MV QLVEQ + RLLK
Sbjct  147  MESGSELSKTVATFILQKILSDDDGLNYICQTPDRFSAVAQVLNSMVVQLVEQPSPRLLK  206

Query  61   HVVRCFLR  68
            HV+RC+LR
Sbjct  207  HVIRCYLR  214



Lambda      K        H        a         alpha
   0.329    0.140    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00035449

Length=776
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464007 pfam13868, TPH, Trichohyalin-plectin-homology domain. ...  75.7    3e-15
CDD:461709 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisa...  60.1    4e-11


>CDD:464007 pfam13868, TPH, Trichohyalin-plectin-homology domain.  This family 
is a mixtrue of two different families of eukaryotic proteins. 
Trichoplein or mitostatin, was first defined as a meiosis-specific 
nuclear structural protein. It has since been 
linked with mitochondrial movement. It is associated with 
the mitochondrial outer membrane, and over-expression leads 
to reduction in mitochondrial motility whereas lack of it enhances 
mitochondrial movement. The activity appears to be mediated 
through binding the mitochondria to the actin intermediate 
filaments (IFs). The family is in the trichohyalin-plectin-homology 
domain.
Length=341

 Score = 75.7 bits (187),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 39/152 (26%), Positives = 70/152 (46%), Gaps = 12/152 (8%)

Query  214  EKILRDRIVEHVLPVIEREEEALQRKRAKREKELLNMQLLAGAKRSGRLAQKAERERQER  273
            E+   D IVE     I+ E++A   ++ +++++L         +++     + E ER+E 
Sbjct  99   EREQMDEIVER----IQEEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKEEEREED  154

Query  274  EAAEAARKYEAELAAARKEEERLRKMEEERRTRMMTREQRIKERERKRLLHEAELQRIAE  333
            E      K +AE    R+ E    + E+ER    +  +Q  K ++ K    E   +   E
Sbjct  155  ERILEYLKEKAEREEEREAEREEIEEEKEREIARLRAQQE-KAQDEKAERDELRAKLYQE  213

Query  334  EQERLERGESRLSERQLKAEMEKQRKSLEELQ  365
            EQER ER       ++ + E EK+ +  +ELQ
Sbjct  214  EQERKER-------QKEREEAEKKARQRQELQ  238


 Score = 73.4 bits (181),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 38/186 (20%)

Query  214  EKILRDRIVEHVLPVIEREEE-ALQRKRAKREKELLNMQLLAGAKRSGRLAQKAERE---  269
            E+   +RI+E++    EREEE   +R+  + EKE    +L A  ++     +KAER+   
Sbjct  150  EREEDERILEYLKEKAEREEEREAEREEIEEEKEREIARLRAQQEK--AQDEKAERDELR  207

Query  270  -------------RQEREAAEAARKYEAELAAARKEEERLRKM--------EEERRTRMM  308
                         ++ERE AE   +   EL  AR+E+  L++         EEE   RM+
Sbjct  208  AKLYQEEQERKERQKEREEAEKKARQRQELQQAREEQIELKERRLAEEAEREEEEFERML  267

Query  309  -------TREQRIKERERKRLL-HEAELQRIAEEQERL---ERGESRLSERQLKAEMEKQ  357
                     EQ   E+ R + L H  EL++  EE+E     ER E      +L+ E  ++
Sbjct  268  RKQAEDEEIEQEEAEKRRMKRLEHRRELEKQIEEREEQRAAEREEELEEGERLREEEAER  327

Query  358  RKSLEE  363
            R+ +EE
Sbjct  328  RERIEE  333


 Score = 66.1 bits (162),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 65/126 (52%), Gaps = 11/126 (9%)

Query  248  LNMQLLAGAKRSGRLAQKAERERQEREAAEAARKYEAELAAARK------EEERLRKMEE  301
            LN +LLA      R AQ AE++R + E  E  R+ +  +   R+      EE+   + EE
Sbjct  11   LNSKLLAAKCNKERDAQIAEKKRIKAEEKEEERRLDEMMEEERERALEEEEEKEEERKEE  70

Query  302  ERRTRMMTREQRIKERERKRLLHEAELQRIAEEQERLERGESRLSERQLKAE--MEKQRK  359
             +R R    EQ I+ERE+KR   E   +++ E ++  E  E    E Q +AE  +EKQR+
Sbjct  71   RKRYRQELEEQ-IEEREQKRQ--EEYEEKLQEREQMDEIVERIQEEDQAEAEEKLEKQRQ  127

Query  360  SLEELQ  365
              EE+ 
Sbjct  128  LREEID  133


>CDD:461709 pfam05672, MAP7, MAP7 (E-MAP-115) family.  The organisation of 
microtubules varies with the cell type and is presumably controlled 
by tissue-specific microtubule-associated proteins 
(MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been 
identified as a microtubule-stabilizing protein predominantly 
expressed in cell lines of epithelial origin. The binding 
of this microtubule associated protein is nucleotide independent.
Length=153

 Score = 60.1 bits (146),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query  252  LLAGAKRSGRLAQKAERERQEREAAEAARKYEAELAAARKEEERLRKMEEERRTRMMTRE  311
            +LA  +R  R   + ERE QER   E   +   E    R EEER R+ EE RR   +  E
Sbjct  15   ILAEKRRQARE--QREREEQERLEKEEEERLRKEELRRRAEEERARREEEARR---LEEE  69

Query  312  QRIKERERKRLLHEAELQRIAEEQERLERGESRLSERQLKA--EMEKQRKSLEEL  364
            +R +E ER+R   E   +R   EQE  ER + +  E + KA  E E+QR+  E++
Sbjct  70   RRREEEERQRKAEEEAEEREQREQEEQERLQKQKEEAEAKAREEAERQRQEREKI  124



Lambda      K        H        a         alpha
   0.311    0.128    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 992413664


Query= TCONS_00031240

Length=828
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464007 pfam13868, TPH, Trichohyalin-plectin-homology domain. ...  73.8    2e-14
CDD:461709 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisa...  59.3    7e-11


>CDD:464007 pfam13868, TPH, Trichohyalin-plectin-homology domain.  This family 
is a mixtrue of two different families of eukaryotic proteins. 
Trichoplein or mitostatin, was first defined as a meiosis-specific 
nuclear structural protein. It has since been 
linked with mitochondrial movement. It is associated with 
the mitochondrial outer membrane, and over-expression leads 
to reduction in mitochondrial motility whereas lack of it enhances 
mitochondrial movement. The activity appears to be mediated 
through binding the mitochondria to the actin intermediate 
filaments (IFs). The family is in the trichohyalin-plectin-homology 
domain.
Length=341

 Score = 73.8 bits (182),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 39/152 (26%), Positives = 70/152 (46%), Gaps = 12/152 (8%)

Query  266  EKILRDRIVEHVLPVIEREEEALQRKRAKREKELLNMQLLAGAKRSGRLAQKAERERQER  325
            E+   D IVE     I+ E++A   ++ +++++L         +++     + E ER+E 
Sbjct  99   EREQMDEIVER----IQEEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKEEEREED  154

Query  326  EAAEAARKYEAELAAARKEEERLRKMEEERRTRMMTREQRIKERERKRLLHEAELQRIAE  385
            E      K +AE    R+ E    + E+ER    +  +Q  K ++ K    E   +   E
Sbjct  155  ERILEYLKEKAEREEEREAEREEIEEEKEREIARLRAQQE-KAQDEKAERDELRAKLYQE  213

Query  386  EQERLERGESRLSERQLKAEMEKQRKSLEELQ  417
            EQER ER       ++ + E EK+ +  +ELQ
Sbjct  214  EQERKER-------QKEREEAEKKARQRQELQ  238


 Score = 71.1 bits (175),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 38/186 (20%)

Query  266  EKILRDRIVEHVLPVIEREEE-ALQRKRAKREKELLNMQLLAGAKRSGRLAQKAERE---  321
            E+   +RI+E++    EREEE   +R+  + EKE    +L A  ++     +KAER+   
Sbjct  150  EREEDERILEYLKEKAEREEEREAEREEIEEEKEREIARLRAQQEK--AQDEKAERDELR  207

Query  322  -------------RQEREAAEAARKYEAELAAARKEEERLRKM--------EEERRTRMM  360
                         ++ERE AE   +   EL  AR+E+  L++         EEE   RM+
Sbjct  208  AKLYQEEQERKERQKEREEAEKKARQRQELQQAREEQIELKERRLAEEAEREEEEFERML  267

Query  361  -------TREQRIKERERKRLL-HEAELQRIAEEQERL---ERGESRLSERQLKAEMEKQ  409
                     EQ   E+ R + L H  EL++  EE+E     ER E      +L+ E  ++
Sbjct  268  RKQAEDEEIEQEEAEKRRMKRLEHRRELEKQIEEREEQRAAEREEELEEGERLREEEAER  327

Query  410  RKSLEE  415
            R+ +EE
Sbjct  328  RERIEE  333


 Score = 64.2 bits (157),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 65/126 (52%), Gaps = 11/126 (9%)

Query  300  LNMQLLAGAKRSGRLAQKAERERQEREAAEAARKYEAELAAARK------EEERLRKMEE  353
            LN +LLA      R AQ AE++R + E  E  R+ +  +   R+      EE+   + EE
Sbjct  11   LNSKLLAAKCNKERDAQIAEKKRIKAEEKEEERRLDEMMEEERERALEEEEEKEEERKEE  70

Query  354  ERRTRMMTREQRIKERERKRLLHEAELQRIAEEQERLERGESRLSERQLKAE--MEKQRK  411
             +R R    EQ I+ERE+KR   E   +++ E ++  E  E    E Q +AE  +EKQR+
Sbjct  71   RKRYRQELEEQ-IEEREQKRQ--EEYEEKLQEREQMDEIVERIQEEDQAEAEEKLEKQRQ  127

Query  412  SLEELQ  417
              EE+ 
Sbjct  128  LREEID  133


>CDD:461709 pfam05672, MAP7, MAP7 (E-MAP-115) family.  The organisation of 
microtubules varies with the cell type and is presumably controlled 
by tissue-specific microtubule-associated proteins 
(MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been 
identified as a microtubule-stabilizing protein predominantly 
expressed in cell lines of epithelial origin. The binding 
of this microtubule associated protein is nucleotide independent.
Length=153

 Score = 59.3 bits (144),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query  304  LLAGAKRSGRLAQKAERERQEREAAEAARKYEAELAAARKEEERLRKMEEERRTRMMTRE  363
            +LA  +R  R   + ERE QER   E   +   E    R EEER R+ EE RR   +  E
Sbjct  15   ILAEKRRQARE--QREREEQERLEKEEEERLRKEELRRRAEEERARREEEARR---LEEE  69

Query  364  QRIKERERKRLLHEAELQRIAEEQERLERGESRLSERQLKA--EMEKQRKSLEEL  416
            +R +E ER+R   E   +R   EQE  ER + +  E + KA  E E+QR+  E++
Sbjct  70   RRREEEERQRKAEEEAEEREQREQEEQERLQKQKEEAEAKAREEAERQRQEREKI  124



Lambda      K        H        a         alpha
   0.312    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1052231762


Query= TCONS_00031238

Length=463


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00035450

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464007 pfam13868, TPH, Trichohyalin-plectin-homology domain. ...  74.2    8e-15


>CDD:464007 pfam13868, TPH, Trichohyalin-plectin-homology domain.  This family 
is a mixtrue of two different families of eukaryotic proteins. 
Trichoplein or mitostatin, was first defined as a meiosis-specific 
nuclear structural protein. It has since been 
linked with mitochondrial movement. It is associated with 
the mitochondrial outer membrane, and over-expression leads 
to reduction in mitochondrial motility whereas lack of it enhances 
mitochondrial movement. The activity appears to be mediated 
through binding the mitochondria to the actin intermediate 
filaments (IFs). The family is in the trichohyalin-plectin-homology 
domain.
Length=341

 Score = 74.2 bits (183),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 39/152 (26%), Positives = 70/152 (46%), Gaps = 12/152 (8%)

Query  28   EKILRDRIVEHVLPVIEREEEALQRKRAKREKELLNMQLLAGAKRSGRLAQKAERERQER  87
            E+   D IVE     I+ E++A   ++ +++++L         +++     + E ER+E 
Sbjct  99   EREQMDEIVER----IQEEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKEEEREED  154

Query  88   EAAEAARKYEAELAAARKEEERLRKMEEERRTRMMTREQRIKERERKRLLHEAELQRIAE  147
            E      K +AE    R+ E    + E+ER    +  +Q  K ++ K    E   +   E
Sbjct  155  ERILEYLKEKAEREEEREAEREEIEEEKEREIARLRAQQE-KAQDEKAERDELRAKLYQE  213

Query  148  EQERLERGESRLSERQLKAEMEKQRKSLEELQ  179
            EQER ER       ++ + E EK+ +  +ELQ
Sbjct  214  EQERKER-------QKEREEAEKKARQRQELQ  238


 Score = 71.5 bits (176),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 38/186 (20%)

Query  28   EKILRDRIVEHVLPVIEREEE-ALQRKRAKREKELLNMQLLAGAKRSGRLAQKAERE---  83
            E+   +RI+E++    EREEE   +R+  + EKE    +L A  ++     +KAER+   
Sbjct  150  EREEDERILEYLKEKAEREEEREAEREEIEEEKEREIARLRAQQEK--AQDEKAERDELR  207

Query  84   -------------RQEREAAEAARKYEAELAAARKEEERLRKM--------EEERRTRMM  122
                         ++ERE AE   +   EL  AR+E+  L++         EEE   RM+
Sbjct  208  AKLYQEEQERKERQKEREEAEKKARQRQELQQAREEQIELKERRLAEEAEREEEEFERML  267

Query  123  -------TREQRIKERERKRLL-HEAELQRIAEEQERL---ERGESRLSERQLKAEMEKQ  171
                     EQ   E+ R + L H  EL++  EE+E     ER E      +L+ E  ++
Sbjct  268  RKQAEDEEIEQEEAEKRRMKRLEHRRELEKQIEEREEQRAAEREEELEEGERLREEEAER  327

Query  172  RKSLEE  177
            R+ +EE
Sbjct  328  RERIEE  333


 Score = 64.2 bits (157),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 65/126 (52%), Gaps = 11/126 (9%)

Query  62   LNMQLLAGAKRSGRLAQKAERERQEREAAEAARKYEAELAAARK------EEERLRKMEE  115
            LN +LLA      R AQ AE++R + E  E  R+ +  +   R+      EE+   + EE
Sbjct  11   LNSKLLAAKCNKERDAQIAEKKRIKAEEKEEERRLDEMMEEERERALEEEEEKEEERKEE  70

Query  116  ERRTRMMTREQRIKERERKRLLHEAELQRIAEEQERLERGESRLSERQLKAE--MEKQRK  173
             +R R    EQ I+ERE+KR   E   +++ E ++  E  E    E Q +AE  +EKQR+
Sbjct  71   RKRYRQELEEQ-IEEREQKRQ--EEYEEKLQEREQMDEIVERIQEEDQAEAEEKLEKQRQ  127

Query  174  SLEELQ  179
              EE+ 
Sbjct  128  LREEID  133



Lambda      K        H        a         alpha
   0.310    0.126    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 744225144


Query= TCONS_00035451

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00031239

Length=836
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464007 pfam13868, TPH, Trichohyalin-plectin-homology domain. ...  73.4    2e-14
CDD:461709 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisa...  58.9    9e-11


>CDD:464007 pfam13868, TPH, Trichohyalin-plectin-homology domain.  This family 
is a mixtrue of two different families of eukaryotic proteins. 
Trichoplein or mitostatin, was first defined as a meiosis-specific 
nuclear structural protein. It has since been 
linked with mitochondrial movement. It is associated with 
the mitochondrial outer membrane, and over-expression leads 
to reduction in mitochondrial motility whereas lack of it enhances 
mitochondrial movement. The activity appears to be mediated 
through binding the mitochondria to the actin intermediate 
filaments (IFs). The family is in the trichohyalin-plectin-homology 
domain.
Length=341

 Score = 73.4 bits (181),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 39/152 (26%), Positives = 70/152 (46%), Gaps = 12/152 (8%)

Query  274  EKILRDRIVEHVLPVIEREEEALQRKRAKREKELLNMQLLAGAKRSGRLAQKAERERQER  333
            E+   D IVE     I+ E++A   ++ +++++L         +++     + E ER+E 
Sbjct  99   EREQMDEIVER----IQEEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKEEEREED  154

Query  334  EAAEAARKYEAELAAARKEEERLRKMEEERRTRMMTREQRIKERERKRLLHEAELQRIAE  393
            E      K +AE    R+ E    + E+ER    +  +Q  K ++ K    E   +   E
Sbjct  155  ERILEYLKEKAEREEEREAEREEIEEEKEREIARLRAQQE-KAQDEKAERDELRAKLYQE  213

Query  394  EQERLERGESRLSERQLKAEMEKQRKSLEELQ  425
            EQER ER       ++ + E EK+ +  +ELQ
Sbjct  214  EQERKER-------QKEREEAEKKARQRQELQ  238


 Score = 70.3 bits (173),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 38/186 (20%)

Query  274  EKILRDRIVEHVLPVIEREEE-ALQRKRAKREKELLNMQLLAGAKRSGRLAQKAERE---  329
            E+   +RI+E++    EREEE   +R+  + EKE    +L A  ++     +KAER+   
Sbjct  150  EREEDERILEYLKEKAEREEEREAEREEIEEEKEREIARLRAQQEK--AQDEKAERDELR  207

Query  330  -------------RQEREAAEAARKYEAELAAARKEEERLRKM--------EEERRTRMM  368
                         ++ERE AE   +   EL  AR+E+  L++         EEE   RM+
Sbjct  208  AKLYQEEQERKERQKEREEAEKKARQRQELQQAREEQIELKERRLAEEAEREEEEFERML  267

Query  369  -------TREQRIKERERKRLL-HEAELQRIAEEQERL---ERGESRLSERQLKAEMEKQ  417
                     EQ   E+ R + L H  EL++  EE+E     ER E      +L+ E  ++
Sbjct  268  RKQAEDEEIEQEEAEKRRMKRLEHRRELEKQIEEREEQRAAEREEELEEGERLREEEAER  327

Query  418  RKSLEE  423
            R+ +EE
Sbjct  328  RERIEE  333


 Score = 63.8 bits (156),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 65/126 (52%), Gaps = 11/126 (9%)

Query  308  LNMQLLAGAKRSGRLAQKAERERQEREAAEAARKYEAELAAARK------EEERLRKMEE  361
            LN +LLA      R AQ AE++R + E  E  R+ +  +   R+      EE+   + EE
Sbjct  11   LNSKLLAAKCNKERDAQIAEKKRIKAEEKEEERRLDEMMEEERERALEEEEEKEEERKEE  70

Query  362  ERRTRMMTREQRIKERERKRLLHEAELQRIAEEQERLERGESRLSERQLKAE--MEKQRK  419
             +R R    EQ I+ERE+KR   E   +++ E ++  E  E    E Q +AE  +EKQR+
Sbjct  71   RKRYRQELEEQ-IEEREQKRQ--EEYEEKLQEREQMDEIVERIQEEDQAEAEEKLEKQRQ  127

Query  420  SLEELQ  425
              EE+ 
Sbjct  128  LREEID  133


>CDD:461709 pfam05672, MAP7, MAP7 (E-MAP-115) family.  The organisation of 
microtubules varies with the cell type and is presumably controlled 
by tissue-specific microtubule-associated proteins 
(MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been 
identified as a microtubule-stabilizing protein predominantly 
expressed in cell lines of epithelial origin. The binding 
of this microtubule associated protein is nucleotide independent.
Length=153

 Score = 58.9 bits (143),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query  312  LLAGAKRSGRLAQKAERERQEREAAEAARKYEAELAAARKEEERLRKMEEERRTRMMTRE  371
            +LA  +R  R   + ERE QER   E   +   E    R EEER R+ EE RR   +  E
Sbjct  15   ILAEKRRQARE--QREREEQERLEKEEEERLRKEELRRRAEEERARREEEARR---LEEE  69

Query  372  QRIKERERKRLLHEAELQRIAEEQERLERGESRLSERQLKA--EMEKQRKSLEEL  424
            +R +E ER+R   E   +R   EQE  ER + +  E + KA  E E+QR+  E++
Sbjct  70   RRREEEERQRKAEEEAEEREQREQEEQERLQKQKEEAEAKAREEAERQRQEREKI  124



Lambda      K        H        a         alpha
   0.312    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1063715874


Query= TCONS_00031241

Length=306


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.123    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0772    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00035452

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00031245

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00035454

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00031246

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00035455

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box          58.0    1e-11


>CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box.  
Length=68

 Score = 58.0 bits (141),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 22/69 (32%), Positives = 36/69 (52%), Gaps = 6/69 (9%)

Query  198  RPMNSFMLYRSAYAERTKEWFAQNNHQVVSEV---AGDSWRIETPEIREKYEVLANVEKA  254
            RPM++F L+     E+  +  A+N     +E+    G+ W+  + E ++ YE  A  EKA
Sbjct  3    RPMSAFFLFSK---EQRAKLKAENPGLKNAEISKILGEKWKALSEEEKKPYEEKAEKEKA  59

Query  255  NHLKAHPGY  263
             + K HP Y
Sbjct  60   RYEKEHPEY  68



Lambda      K        H        a         alpha
   0.310    0.126    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00031247

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box          58.0    2e-11


>CDD:459837 pfam00505, HMG_box, HMG (high mobility group) box.  
Length=68

 Score = 58.0 bits (141),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 22/69 (32%), Positives = 36/69 (52%), Gaps = 6/69 (9%)

Query  198  RPMNSFMLYRSAYAERTKEWFAQNNHQVVSEV---AGDSWRIETPEIREKYEVLANVEKA  254
            RPM++F L+     E+  +  A+N     +E+    G+ W+  + E ++ YE  A  EKA
Sbjct  3    RPMSAFFLFSK---EQRAKLKAENPGLKNAEISKILGEKWKALSEEEKKPYEEKAEKEKA  59

Query  255  NHLKAHPGY  263
             + K HP Y
Sbjct  60   RYEKEHPEY  68



Lambda      K        H        a         alpha
   0.310    0.126    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00031248

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.145    0.518    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00035456

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00031249

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00031250

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family. Th...  80.8    2e-17


>CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family.  This family 
of integral membrane proteins are known as the Sulfate Permease 
(SulP) family. SulP is a large family found in all domains 
of life. Although sulfate is a commonly transported ion 
there are many other activities in this family. See the TCDB 
description for a comprehensive summary.
Length=379

 Score = 80.8 bits (200),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 88/222 (40%), Gaps = 29/222 (13%)

Query  121  LPSVFLGLLLNILDALSYGMILFPLGEPIFSDLGSDGISMFYVSTVIAQLVFSCGGSIFR  180
            L +     +L I  AL+Y  IL  L  P    L          S+ +   V++  G+   
Sbjct  5    LIAGITVAILAIPQALAYA-ILAGL--PPIYGL---------YSSFVPGFVYALFGTSRH  52

Query  181  GGIGSEMIEVVPFFHKMAMTILLRVGEDNPKSVLATTILAFSASSVLTGLVFFLMGTCKL  240
              IG   +  +     M    + ++   +P+  +A   LAF+ +  L G++   +G  +L
Sbjct  53   LAIGPVAVLSL-----MVGAAIAKLAAKDPELGIA---LAFTLT-FLAGIIQLALGLLRL  103

Query  241  GSLIGFFPRHILIGCIGGVGFFLMQTGVEVSARLSGSLELNG--PTLQKLF-HMDTFLL-  296
            G L+ F    ++ G +GG    ++ + ++V   L+           LQ LF ++D   L 
Sbjct  104  GFLVTFLSHAVISGFMGGAAIVILLSQLKVLLGLTNFSGPGYVVSVLQSLFTNLDKVNLA  163

Query  297  -WMIPLFLAIAFLVLKRF---VRSNFLVGGYFVTVGVVFYIV  334
              ++ L + +  L  K      +  F +      V VV   +
Sbjct  164  TLVLGLLVLVILLFTKELGKKYKKLFWIPAPAPLVAVVLATL  205



Lambda      K        H        a         alpha
   0.325    0.143    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00031251

Length=215


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00031252

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family. Th...  96.2    4e-22
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  74.2    6e-17


>CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family.  This family 
of integral membrane proteins are known as the Sulfate Permease 
(SulP) family. SulP is a large family found in all domains 
of life. Although sulfate is a commonly transported ion 
there are many other activities in this family. See the TCDB 
description for a comprehensive summary.
Length=379

 Score = 96.2 bits (240),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 13/139 (9%)

Query  1    MFALTFFGVLHVPINVPALGISTGEDN-----LSVDRELIAHGVTNALSGFAGSIQNYLV  55
              A+   G+L       A+ IS          +  ++EL+A G  N LSG  G       
Sbjct  248  ALAIAIVGLLE------AIAISKSFAKKKGYEVDSNQELVALGFANILSGLFGGYPATGA  301

Query  56   YTNSLLFIASGGNSRLAGIMLAFATMGILVVGPAIIGFIPVMVVGALIFMLGIELME-EA  114
            ++ S + I +G  + L+GI++A   + +L+    +  +IP  V+ A+I + G  L++   
Sbjct  302  FSRSAVNIKAGAKTPLSGIIMAVIVLLVLLFLTPLFAYIPKAVLAAIIIVAGKGLIDYRE  361

Query  115  LVDTWGKLHRLEYLTVVSI  133
            L   W +L +L++L  ++ 
Sbjct  362  LKHLW-RLSKLDFLIWLAT  379


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 74.2 bits (183),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 41/90 (46%), Gaps = 6/90 (7%)

Query  412  RVCYAAGTVLFQEGDLPDGFYLLESGMLRAEYELPQGRYFELIVG----GRPCGELPFFS  467
               Y AG V+F+EGD  D  Y++ SG ++    L  GR  E I+     G   GEL    
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGR--EQILAVLGPGDFFGELALLG  58

Query  468  ETRRTATVKAEQDCVTWCLNADKWKQLREE  497
               R+ATV A  D     +  + + +L E 
Sbjct  59   GEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.323    0.138    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 652562446


Query= TCONS_00031253

Length=370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family. Th...  80.8    2e-17


>CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family.  This family 
of integral membrane proteins are known as the Sulfate Permease 
(SulP) family. SulP is a large family found in all domains 
of life. Although sulfate is a commonly transported ion 
there are many other activities in this family. See the TCDB 
description for a comprehensive summary.
Length=379

 Score = 80.8 bits (200),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 88/222 (40%), Gaps = 29/222 (13%)

Query  121  LPSVFLGLLLNILDALSYGMILFPLGEPIFSDLGSDGISMFYVSTVIAQLVFSCGGSIFR  180
            L +     +L I  AL+Y  IL  L  P    L          S+ +   V++  G+   
Sbjct  5    LIAGITVAILAIPQALAYA-ILAGL--PPIYGL---------YSSFVPGFVYALFGTSRH  52

Query  181  GGIGSEMIEVVPFFHKMAMTILLRVGEDNPKSVLATTILAFSASSVLTGLVFFLMGTCKL  240
              IG   +  +     M    + ++   +P+  +A   LAF+ +  L G++   +G  +L
Sbjct  53   LAIGPVAVLSL-----MVGAAIAKLAAKDPELGIA---LAFTLT-FLAGIIQLALGLLRL  103

Query  241  GSLIGFFPRHILIGCIGGVGFFLMQTGVEVSARLSGSLELNG--PTLQKLF-HMDTFLL-  296
            G L+ F    ++ G +GG    ++ + ++V   L+           LQ LF ++D   L 
Sbjct  104  GFLVTFLSHAVISGFMGGAAIVILLSQLKVLLGLTNFSGPGYVVSVLQSLFTNLDKVNLA  163

Query  297  -WMIPLFLAIAFLVLKRF---VRSNFLVGGYFVTVGVVFYIV  334
              ++ L + +  L  K      +  F +      V VV   +
Sbjct  164  TLVLGLLVLVILLFTKELGKKYKKLFWIPAPAPLVAVVLATL  205



Lambda      K        H        a         alpha
   0.325    0.143    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00031254

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family. Th...  162     2e-45


>CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family.  This family 
of integral membrane proteins are known as the Sulfate Permease 
(SulP) family. SulP is a large family found in all domains 
of life. Although sulfate is a commonly transported ion 
there are many other activities in this family. See the TCDB 
description for a comprehensive summary.
Length=379

 Score = 162 bits (412),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 93/410 (23%), Positives = 166/410 (40%), Gaps = 54/410 (13%)

Query  121  LPSVFLGLLLNILDALSYGMILFPLGEPIFSDLGSDGISMFYVSTVIAQLVFSCGGSIFR  180
            L +     +L I  AL+Y  IL  L  P    L          S+ +   V++  G+   
Sbjct  5    LIAGITVAILAIPQALAYA-ILAGL--PPIYGL---------YSSFVPGFVYALFGTSRH  52

Query  181  GGIGSEMIEVVPFFHKMAMTILLRVGEDNPKSVLATTILAFSASSVLTGLVFFLMGTCKL  240
              IG   +  +     M    + ++   +P+  +A   LAF+ +  L G++   +G  +L
Sbjct  53   LAIGPVAVLSL-----MVGAAIAKLAAKDPELGIA---LAFTLT-FLAGIIQLALGLLRL  103

Query  241  GSLIGFFPRHILIGCIGGVGFFLMQTGVEVSARLSGSLELNG--PTLQKLF-HMDTFLL-  296
            G L+ F    ++ G +GG    ++ + ++V   L+           LQ LF ++D   L 
Sbjct  104  GFLVTFLSHAVISGFMGGAAIVILLSQLKVLLGLTNFSGPGYVVSVLQSLFTNLDKVNLA  163

Query  297  -WMIPLFLAIAFLVLKRF---VRSNFLVGGYFVTVGVVFYIVKFGARVSMDTLRSRGW--  350
              ++ L + +  L  K      +  F +      V VV   +        D LR  G   
Sbjct  164  TLVLGLLVLVILLFTKELGKKYKKLFWIPAPAPLVAVVLATL---VSAIFDLLRRYGVKI  220

Query  351  VFDAPSSSNPWYHFYTLYDFSAVDWSAFVDTIPAMFALTFFGVLHVPINVPALGISTGED  410
            V + PS   P       +      WS     +P   A+   G+L       A+ IS    
Sbjct  221  VGEIPSGLPP-------FSLPKFSWSLLSALLPDALAIAIVGLLE------AIAISKSFA  267

Query  411  N-----LSVDRELIAHGVTNALSGFAGSIQNYLVYTNSLLFIASGGNSRLAGIMLAFATM  465
                  +  ++EL+A G  N LSG  G       ++ S + I +G  + L+GI++A   +
Sbjct  268  KKKGYEVDSNQELVALGFANILSGLFGGYPATGAFSRSAVNIKAGAKTPLSGIIMAVIVL  327

Query  466  GILVVGPAIIGFIPVMVVGALIFMLGIELME-EALVDTWGKLHRLEYLTV  514
             +L+    +  +IP  V+ A+I + G  L++   L   W +L +L++L  
Sbjct  328  LVLLFLTPLFAYIPKAVLAAIIIVAGKGLIDYRELKHLW-RLSKLDFLIW  376



Lambda      K        H        a         alpha
   0.324    0.141    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690425736


Query= TCONS_00031255

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family. Th...  162     2e-45


>CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family.  This family 
of integral membrane proteins are known as the Sulfate Permease 
(SulP) family. SulP is a large family found in all domains 
of life. Although sulfate is a commonly transported ion 
there are many other activities in this family. See the TCDB 
description for a comprehensive summary.
Length=379

 Score = 162 bits (412),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 93/410 (23%), Positives = 166/410 (40%), Gaps = 54/410 (13%)

Query  121  LPSVFLGLLLNILDALSYGMILFPLGEPIFSDLGSDGISMFYVSTVIAQLVFSCGGSIFR  180
            L +     +L I  AL+Y  IL  L  P    L          S+ +   V++  G+   
Sbjct  5    LIAGITVAILAIPQALAYA-ILAGL--PPIYGL---------YSSFVPGFVYALFGTSRH  52

Query  181  GGIGSEMIEVVPFFHKMAMTILLRVGEDNPKSVLATTILAFSASSVLTGLVFFLMGTCKL  240
              IG   +  +     M    + ++   +P+  +A   LAF+ +  L G++   +G  +L
Sbjct  53   LAIGPVAVLSL-----MVGAAIAKLAAKDPELGIA---LAFTLT-FLAGIIQLALGLLRL  103

Query  241  GSLIGFFPRHILIGCIGGVGFFLMQTGVEVSARLSGSLELNG--PTLQKLF-HMDTFLL-  296
            G L+ F    ++ G +GG    ++ + ++V   L+           LQ LF ++D   L 
Sbjct  104  GFLVTFLSHAVISGFMGGAAIVILLSQLKVLLGLTNFSGPGYVVSVLQSLFTNLDKVNLA  163

Query  297  -WMIPLFLAIAFLVLKRF---VRSNFLVGGYFVTVGVVFYIVKFGARVSMDTLRSRGW--  350
              ++ L + +  L  K      +  F +      V VV   +        D LR  G   
Sbjct  164  TLVLGLLVLVILLFTKELGKKYKKLFWIPAPAPLVAVVLATL---VSAIFDLLRRYGVKI  220

Query  351  VFDAPSSSNPWYHFYTLYDFSAVDWSAFVDTIPAMFALTFFGVLHVPINVPALGISTGED  410
            V + PS   P       +      WS     +P   A+   G+L       A+ IS    
Sbjct  221  VGEIPSGLPP-------FSLPKFSWSLLSALLPDALAIAIVGLLE------AIAISKSFA  267

Query  411  N-----LSVDRELIAHGVTNALSGFAGSIQNYLVYTNSLLFIASGGNSRLAGIMLAFATM  465
                  +  ++EL+A G  N LSG  G       ++ S + I +G  + L+GI++A   +
Sbjct  268  KKKGYEVDSNQELVALGFANILSGLFGGYPATGAFSRSAVNIKAGAKTPLSGIIMAVIVL  327

Query  466  GILVVGPAIIGFIPVMVVGALIFMLGIELME-EALVDTWGKLHRLEYLTV  514
             +L+    +  +IP  V+ A+I + G  L++   L   W +L +L++L  
Sbjct  328  LVLLFLTPLFAYIPKAVLAAIIIVAGKGLIDYRELKHLW-RLSKLDFLIW  376



Lambda      K        H        a         alpha
   0.324    0.141    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690425736


Query= TCONS_00031258

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family. Th...  109     1e-26


>CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family.  This family 
of integral membrane proteins are known as the Sulfate Permease 
(SulP) family. SulP is a large family found in all domains 
of life. Although sulfate is a commonly transported ion 
there are many other activities in this family. See the TCDB 
description for a comprehensive summary.
Length=379

 Score = 109 bits (274),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 77/356 (22%), Positives = 133/356 (37%), Gaps = 54/356 (15%)

Query  121  LPSVFLGLLLNILDALSYGMILFPLGEPIFSDLGSDGISMFYVSTVIAQLVFSCGGSIFR  180
            L +     +L I  AL+Y  IL  L  P    L          S+ +   V++  G+   
Sbjct  5    LIAGITVAILAIPQALAYA-ILAGL--PPIYGL---------YSSFVPGFVYALFGTSRH  52

Query  181  GGIGSEMIEVVPFFHKMAMTILLRVGEDNPKSVLATTILAFSASSVLTGLVFFLMGTCKL  240
              IG   +  +     M    + ++   +P+  +A   LAF+ +  L G++   +G  +L
Sbjct  53   LAIGPVAVLSL-----MVGAAIAKLAAKDPELGIA---LAFTLT-FLAGIIQLALGLLRL  103

Query  241  GSLIGFFPRHILIGCIGGVGFFLMQTGVEVSARLSGSLELNG--PTLQKLF-HMDTFLL-  296
            G L+ F    ++ G +GG    ++ + ++V   L+           LQ LF ++D   L 
Sbjct  104  GFLVTFLSHAVISGFMGGAAIVILLSQLKVLLGLTNFSGPGYVVSVLQSLFTNLDKVNLA  163

Query  297  -WMIPLFLAIAFLVLKRF---VRSNFLVGGYFVTVGVVFYIVKFGARVSMDTLRSRGW--  350
              ++ L + +  L  K      +  F +      V VV   +        D LR  G   
Sbjct  164  TLVLGLLVLVILLFTKELGKKYKKLFWIPAPAPLVAVVLATL---VSAIFDLLRRYGVKI  220

Query  351  VFDAPSSSNPWYHFYTLYDFSAVDWSAFVDTIPAMFALTFFGVLHVPINVPALGISTGED  410
            V + PS   P       +      WS     +P   A+   G+L       A+ IS    
Sbjct  221  VGEIPSGLPP-------FSLPKFSWSLLSALLPDALAIAIVGLLE------AIAISKSFA  267

Query  411  N-----LSVDRELIAHGVTNALSGFAGSIQVRLSNLRGIIRFIYSCSSRTTLYTLI  461
                  +  ++EL+A G  N LSG  G      +  R  +       ++T L  +I
Sbjct  268  KKKGYEVDSNQELVALGFANILSGLFGGYPATGAFSRSAVNI--KAGAKTPLSGII  321



Lambda      K        H        a         alpha
   0.326    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 637421786


Query= TCONS_00035458

Length=1063
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family. Th...  177     4e-49
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  75.3    4e-17


>CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family.  This family 
of integral membrane proteins are known as the Sulfate Permease 
(SulP) family. SulP is a large family found in all domains 
of life. Although sulfate is a commonly transported ion 
there are many other activities in this family. See the TCDB 
description for a comprehensive summary.
Length=379

 Score = 177 bits (451),  Expect = 4e-49, Method: Composition-based stats.
 Identities = 95/415 (23%), Positives = 170/415 (41%), Gaps = 58/415 (14%)

Query  278  LPSVFLGLLLNILDALSYGMILFPLGEPIFSDLGSDGISMFYVSTVIAQLVFSCGGSIFR  337
            L +     +L I  AL+Y  IL  L  P    L          S+ +   V++  G+   
Sbjct  5    LIAGITVAILAIPQALAYA-ILAGL--PPIYGL---------YSSFVPGFVYALFGTSRH  52

Query  338  GGIGSEMIEVVPFFHKMAMTILLRVGEDNPKSVLATTILAFSASSVLTGLVFFLMGTCKL  397
              IG   +  +     M    + ++   +P+  +A   LAF+ +  L G++   +G  +L
Sbjct  53   LAIGPVAVLSL-----MVGAAIAKLAAKDPELGIA---LAFTLT-FLAGIIQLALGLLRL  103

Query  398  GSLIGFFPRHILIGCIGGVGFFLMQTGVEVSARLSGSLELNG--PTLQKLF-HMDTFLL-  453
            G L+ F    ++ G +GG    ++ + ++V   L+           LQ LF ++D   L 
Sbjct  104  GFLVTFLSHAVISGFMGGAAIVILLSQLKVLLGLTNFSGPGYVVSVLQSLFTNLDKVNLA  163

Query  454  -WMIPLFLAIAFLVLKRF---VRSNFLVGGYFVTVGVVFYIVKFGARVSM--DTLRSRGW  507
              ++ L + +  L  K      +  F +      V VV   +     VS   D LR  G 
Sbjct  164  TLVLGLLVLVILLFTKELGKKYKKLFWIPAPAPLVAVVLATL-----VSAIFDLLRRYGV  218

Query  508  --VFDAPSSSNPWYHFYTLYDFSAVDWSAFVDTIPAMFALTFFGVLHVPINVPALGISTG  565
              V + PS   P       +      WS     +P   A+   G+L       A+ IS  
Sbjct  219  KIVGEIPSGLPP-------FSLPKFSWSLLSALLPDALAIAIVGLLE------AIAISKS  265

Query  566  EDN-----LSVDRELIAHGVTNALSGFAGSIQNYLVYTNSLLFIASGGNSRLAGIMLAFA  620
                    +  ++EL+A G  N LSG  G       ++ S + I +G  + L+GI++A  
Sbjct  266  FAKKKGYEVDSNQELVALGFANILSGLFGGYPATGAFSRSAVNIKAGAKTPLSGIIMAVI  325

Query  621  TMGILVVGPAIIGFIPVMVVGALIFMLGIELME-EALVDTWGKLHRLEYLTVVSI  674
             + +L+    +  +IP  V+ A+I + G  L++   L   W +L +L++L  ++ 
Sbjct  326  VLLVLLFLTPLFAYIPKAVLAAIIIVAGKGLIDYRELKHLW-RLSKLDFLIWLAT  379


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 75.3 bits (186),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 41/90 (46%), Gaps = 6/90 (7%)

Query  953   RVCYAAGTVLFQEGDLPDGFYLLESGMLRAEYELPQGRYFELIVG----GRPCGELPFFS  1008
                Y AG V+F+EGD  D  Y++ SG ++    L  GR  E I+     G   GEL    
Sbjct  1     LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGR--EQILAVLGPGDFFGELALLG  58

Query  1009  ETRRTATVKAEQDCVTWCLNADKWKQLREE  1038
                R+ATV A  D     +  + + +L E 
Sbjct  59    GEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.322    0.138    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1369152092


Query= TCONS_00035459

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family. Th...  85.4    2e-18


>CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family.  This family 
of integral membrane proteins are known as the Sulfate Permease 
(SulP) family. SulP is a large family found in all domains 
of life. Although sulfate is a commonly transported ion 
there are many other activities in this family. See the TCDB 
description for a comprehensive summary.
Length=379

 Score = 85.4 bits (212),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 88/222 (40%), Gaps = 29/222 (13%)

Query  278  LPSVFLGLLLNILDALSYGMILFPLGEPIFSDLGSDGISMFYVSTVIAQLVFSCGGSIFR  337
            L +     +L I  AL+Y  IL  L  P    L          S+ +   V++  G+   
Sbjct  5    LIAGITVAILAIPQALAYA-ILAGL--PPIYGL---------YSSFVPGFVYALFGTSRH  52

Query  338  GGIGSEMIEVVPFFHKMAMTILLRVGEDNPKSVLATTILAFSASSVLTGLVFFLMGTCKL  397
              IG   +  +     M    + ++   +P+  +A   LAF+ +  L G++   +G  +L
Sbjct  53   LAIGPVAVLSL-----MVGAAIAKLAAKDPELGIA---LAFTLT-FLAGIIQLALGLLRL  103

Query  398  GSLIGFFPRHILIGCIGGVGFFLMQTGVEVSARLSGSLELNG--PTLQKLF-HMDTFLL-  453
            G L+ F    ++ G +GG    ++ + ++V   L+           LQ LF ++D   L 
Sbjct  104  GFLVTFLSHAVISGFMGGAAIVILLSQLKVLLGLTNFSGPGYVVSVLQSLFTNLDKVNLA  163

Query  454  -WMIPLFLAIAFLVLKRF---VRSNFLVGGYFVTVGVVFYIV  491
              ++ L + +  L  K      +  F +      V VV   +
Sbjct  164  TLVLGLLVLVILLFTKELGKKYKKLFWIPAPAPLVAVVLATL  205



Lambda      K        H        a         alpha
   0.322    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 660132776


Query= TCONS_00035460

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  75.0    2e-17


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 75.0 bits (185),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 41/90 (46%), Gaps = 6/90 (7%)

Query  276  RVCYAAGTVLFQEGDLPDGFYLLESGMLRAEYELPQGRYFELIVG----GRPCGELPFFS  331
               Y AG V+F+EGD  D  Y++ SG ++    L  GR  E I+     G   GEL    
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGR--EQILAVLGPGDFFGELALLG  58

Query  332  ETRRTATVKAEQDCVTWCLNADKWKQLREE  361
               R+ATV A  D     +  + + +L E 
Sbjct  59   GEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.322    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00031256

Length=1014
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family. Th...  174     3e-48
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  75.3    5e-17


>CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family.  This family 
of integral membrane proteins are known as the Sulfate Permease 
(SulP) family. SulP is a large family found in all domains 
of life. Although sulfate is a commonly transported ion 
there are many other activities in this family. See the TCDB 
description for a comprehensive summary.
Length=379

 Score = 174 bits (444),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 95/415 (23%), Positives = 170/415 (41%), Gaps = 58/415 (14%)

Query  229  LPSVFLGLLLNILDALSYGMILFPLGEPIFSDLGSDGISMFYVSTVIAQLVFSCGGSIFR  288
            L +     +L I  AL+Y  IL  L  P    L          S+ +   V++  G+   
Sbjct  5    LIAGITVAILAIPQALAYA-ILAGL--PPIYGL---------YSSFVPGFVYALFGTSRH  52

Query  289  GGIGSEMIEVVPFFHKMAMTILLRVGEDNPKSVLATTILAFSASSVLTGLVFFLMGTCKL  348
              IG   +  +     M    + ++   +P+  +A   LAF+ +  L G++   +G  +L
Sbjct  53   LAIGPVAVLSL-----MVGAAIAKLAAKDPELGIA---LAFTLT-FLAGIIQLALGLLRL  103

Query  349  GSLIGFFPRHILIGCIGGVGFFLMQTGVEVSARLSGSLELNG--PTLQKLF-HMDTFLL-  404
            G L+ F    ++ G +GG    ++ + ++V   L+           LQ LF ++D   L 
Sbjct  104  GFLVTFLSHAVISGFMGGAAIVILLSQLKVLLGLTNFSGPGYVVSVLQSLFTNLDKVNLA  163

Query  405  -WMIPLFLAIAFLVLKRF---VRSNFLVGGYFVTVGVVFYIVKFGARVSM--DTLRSRGW  458
              ++ L + +  L  K      +  F +      V VV   +     VS   D LR  G 
Sbjct  164  TLVLGLLVLVILLFTKELGKKYKKLFWIPAPAPLVAVVLATL-----VSAIFDLLRRYGV  218

Query  459  --VFDAPSSSNPWYHFYTLYDFSAVDWSAFVDTIPAMFALTFFGVLHVPINVPALGISTG  516
              V + PS   P       +      WS     +P   A+   G+L       A+ IS  
Sbjct  219  KIVGEIPSGLPP-------FSLPKFSWSLLSALLPDALAIAIVGLLE------AIAISKS  265

Query  517  EDN-----LSVDRELIAHGVTNALSGFAGSIQNYLVYTNSLLFIASGGNSRLAGIMLAFA  571
                    +  ++EL+A G  N LSG  G       ++ S + I +G  + L+GI++A  
Sbjct  266  FAKKKGYEVDSNQELVALGFANILSGLFGGYPATGAFSRSAVNIKAGAKTPLSGIIMAVI  325

Query  572  TMGILVVGPAIIGFIPVMVVGALIFMLGIELME-EALVDTWGKLHRLEYLTVVSI  625
             + +L+    +  +IP  V+ A+I + G  L++   L   W +L +L++L  ++ 
Sbjct  326  VLLVLLFLTPLFAYIPKAVLAAIIIVAGKGLIDYRELKHLW-RLSKLDFLIWLAT  379


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 75.3 bits (186),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 41/90 (46%), Gaps = 6/90 (7%)

Query  904  RVCYAAGTVLFQEGDLPDGFYLLESGMLRAEYELPQGRYFELIVG----GRPCGELPFFS  959
               Y AG V+F+EGD  D  Y++ SG ++    L  GR  E I+     G   GEL    
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGR--EQILAVLGPGDFFGELALLG  58

Query  960  ETRRTATVKAEQDCVTWCLNADKWKQLREE  989
               R+ATV A  D     +  + + +L E 
Sbjct  59   GEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.323    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1299774168


Query= TCONS_00031257

Length=643
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family. Th...  105     8e-25
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  74.2    6e-17


>CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family.  This family 
of integral membrane proteins are known as the Sulfate Permease 
(SulP) family. SulP is a large family found in all domains 
of life. Although sulfate is a commonly transported ion 
there are many other activities in this family. See the TCDB 
description for a comprehensive summary.
Length=379

 Score = 105 bits (263),  Expect = 8e-25, Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 104/251 (41%), Gaps = 35/251 (14%)

Query  20   PTLQKLF-HMDTFLL--WMIPLFLAIAFLVLKRF---VRSNFLVGGYFVTVGVVFYIVKF  73
              LQ LF ++D   L   ++ L + +  L  K      +  F +      V VV   +  
Sbjct  148  SVLQSLFTNLDKVNLATLVLGLLVLVILLFTKELGKKYKKLFWIPAPAPLVAVVLATL--  205

Query  74   GARVSM--DTLRSRGW--VFDAPSSSNPWYHFYTLYDFSAVDWSAFVDTIPAMFALTFFG  129
               VS   D LR  G   V + PS   P       +      WS     +P   A+   G
Sbjct  206  ---VSAIFDLLRRYGVKIVGEIPSGLPP-------FSLPKFSWSLLSALLPDALAIAIVG  255

Query  130  VLHVPINVPALGISTGEDN-----LSVDRELIAHGVTNALSGFAGSIQDYLVYTNSLLFI  184
            +L       A+ IS          +  ++EL+A G  N LSG  G       ++ S + I
Sbjct  256  LLE------AIAISKSFAKKKGYEVDSNQELVALGFANILSGLFGGYPATGAFSRSAVNI  309

Query  185  ASGGNSRLAGIMLAFATMGILVVGPAIIGFIPVMVVGALIFMLGIELME-EALVDTWGKL  243
             +G  + L+GI++A   + +L+    +  +IP  V+ A+I + G  L++   L   W +L
Sbjct  310  KAGAKTPLSGIIMAVIVLLVLLFLTPLFAYIPKAVLAAIIIVAGKGLIDYRELKHLW-RL  368

Query  244  HRLEYLTVVSI  254
             +L++L  ++ 
Sbjct  369  SKLDFLIWLAT  379


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 74.2 bits (183),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 41/90 (46%), Gaps = 6/90 (7%)

Query  533  RVCYAAGTVLFQEGDLPDGFYLLESGMLRAEYELPQGRYFELIVG----GRPCGELPFFS  588
               Y AG V+F+EGD  D  Y++ SG ++    L  GR  E I+     G   GEL    
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGR--EQILAVLGPGDFFGELALLG  58

Query  589  ETRRTATVKAEQDCVTWCLNADKWKQLREE  618
               R+ATV A  D     +  + + +L E 
Sbjct  59   GEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.325    0.139    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 811134500


Query= TCONS_00035461

Length=643
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family. Th...  106     2e-25
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  74.2    6e-17


>CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family.  This family 
of integral membrane proteins are known as the Sulfate Permease 
(SulP) family. SulP is a large family found in all domains 
of life. Although sulfate is a commonly transported ion 
there are many other activities in this family. See the TCDB 
description for a comprehensive summary.
Length=379

 Score = 106 bits (268),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 104/251 (41%), Gaps = 35/251 (14%)

Query  20   PTLQKLF-HMDTFLL--WMIPLFLAIAFLVLKRF---VRSNFLVGGYFVTVGVVFYIVKF  73
              LQ LF ++D   L   ++ L + +  L  K      +  F +      V VV   +  
Sbjct  148  SVLQSLFTNLDKVNLATLVLGLLVLVILLFTKELGKKYKKLFWIPAPAPLVAVVLATL--  205

Query  74   GARVSM--DTLRSRGW--VFDAPSSSNPWYHFYTLYDFSAVDWSAFVDTIPAMFALTFFG  129
               VS   D LR  G   V + PS   P       +      WS     +P   A+   G
Sbjct  206  ---VSAIFDLLRRYGVKIVGEIPSGLPP-------FSLPKFSWSLLSALLPDALAIAIVG  255

Query  130  VLHVPINVPALGISTGEDN-----LSVDRELIAHGVTNALSGFAGSIQNYLVYTNSLLFI  184
            +L       A+ IS          +  ++EL+A G  N LSG  G       ++ S + I
Sbjct  256  LLE------AIAISKSFAKKKGYEVDSNQELVALGFANILSGLFGGYPATGAFSRSAVNI  309

Query  185  ASGGNSRLAGIMLAFATMGILVVGPAIIGFIPVMVVGALIFMLGIELME-EALVDTWGKL  243
             +G  + L+GI++A   + +L+    +  +IP  V+ A+I + G  L++   L   W +L
Sbjct  310  KAGAKTPLSGIIMAVIVLLVLLFLTPLFAYIPKAVLAAIIIVAGKGLIDYRELKHLW-RL  368

Query  244  HRLEYLTVVSI  254
             +L++L  ++ 
Sbjct  369  SKLDFLIWLAT  379


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 74.2 bits (183),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 41/90 (46%), Gaps = 6/90 (7%)

Query  533  RVCYAAGTVLFQEGDLPDGFYLLESGMLRAEYELPQGRYFELIVG----GRPCGELPFFS  588
               Y AG V+F+EGD  D  Y++ SG ++    L  GR  E I+     G   GEL    
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGR--EQILAVLGPGDFFGELALLG  58

Query  589  ETRRTATVKAEQDCVTWCLNADKWKQLREE  618
               R+ATV A  D     +  + + +L E 
Sbjct  59   GEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.325    0.139    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 811134500


Query= TCONS_00031259

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  75.0    2e-17


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 75.0 bits (185),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 41/90 (46%), Gaps = 6/90 (7%)

Query  276  RVCYAAGTVLFQEGDLPDGFYLLESGMLRAEYELPQGRYFELIVG----GRPCGELPFFS  331
               Y AG V+F+EGD  D  Y++ SG ++    L  GR  E I+     G   GEL    
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGR--EQILAVLGPGDFFGELALLG  58

Query  332  ETRRTATVKAEQDCVTWCLNADKWKQLREE  361
               R+ATV A  D     +  + + +L E 
Sbjct  59   GEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.322    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00031260

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  75.0    2e-17


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 75.0 bits (185),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 41/90 (46%), Gaps = 6/90 (7%)

Query  276  RVCYAAGTVLFQEGDLPDGFYLLESGMLRAEYELPQGRYFELIVG----GRPCGELPFFS  331
               Y AG V+F+EGD  D  Y++ SG ++    L  GR  E I+     G   GEL    
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGR--EQILAVLGPGDFFGELALLG  58

Query  332  ETRRTATVKAEQDCVTWCLNADKWKQLREE  361
               R+ATV A  D     +  + + +L E 
Sbjct  59   GEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.322    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00035462

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family. Th...  96.2    4e-22
CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  74.2    6e-17


>CDD:459995 pfam00916, Sulfate_transp, Sulfate permease family.  This family 
of integral membrane proteins are known as the Sulfate Permease 
(SulP) family. SulP is a large family found in all domains 
of life. Although sulfate is a commonly transported ion 
there are many other activities in this family. See the TCDB 
description for a comprehensive summary.
Length=379

 Score = 96.2 bits (240),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 13/139 (9%)

Query  1    MFALTFFGVLHVPINVPALGISTGEDN-----LSVDRELIAHGVTNALSGFAGSIQNYLV  55
              A+   G+L       A+ IS          +  ++EL+A G  N LSG  G       
Sbjct  248  ALAIAIVGLLE------AIAISKSFAKKKGYEVDSNQELVALGFANILSGLFGGYPATGA  301

Query  56   YTNSLLFIASGGNSRLAGIMLAFATMGILVVGPAIIGFIPVMVVGALIFMLGIELME-EA  114
            ++ S + I +G  + L+GI++A   + +L+    +  +IP  V+ A+I + G  L++   
Sbjct  302  FSRSAVNIKAGAKTPLSGIIMAVIVLLVLLFLTPLFAYIPKAVLAAIIIVAGKGLIDYRE  361

Query  115  LVDTWGKLHRLEYLTVVSI  133
            L   W +L +L++L  ++ 
Sbjct  362  LKHLW-RLSKLDFLIWLAT  379


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 74.2 bits (183),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 41/90 (46%), Gaps = 6/90 (7%)

Query  412  RVCYAAGTVLFQEGDLPDGFYLLESGMLRAEYELPQGRYFELIVG----GRPCGELPFFS  467
               Y AG V+F+EGD  D  Y++ SG ++    L  GR  E I+     G   GEL    
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGR--EQILAVLGPGDFFGELALLG  58

Query  468  ETRRTATVKAEQDCVTWCLNADKWKQLREE  497
               R+ATV A  D     +  + + +L E 
Sbjct  59   GEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.323    0.138    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 652562446


Query= TCONS_00031261

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  75.0    2e-17


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 75.0 bits (185),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 41/90 (46%), Gaps = 6/90 (7%)

Query  276  RVCYAAGTVLFQEGDLPDGFYLLESGMLRAEYELPQGRYFELIVG----GRPCGELPFFS  331
               Y AG V+F+EGD  D  Y++ SG ++    L  GR  E I+     G   GEL    
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGR--EQILAVLGPGDFFGELALLG  58

Query  332  ETRRTATVKAEQDCVTWCLNADKWKQLREE  361
               R+ATV A  D     +  + + +L E 
Sbjct  59   GEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.322    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0781    0.140     1.90     42.6     43.6 

Effective search space used: 472215968


Query= TCONS_00031262

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain  73.8    5e-17


>CDD:459637 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.  
Length=89

 Score = 73.8 bits (182),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 41/90 (46%), Gaps = 6/90 (7%)

Query  338  RVCYAAGTVLFQEGDLPDGFYLLESGMLRAEYELPQGRYFELIVG----GRPCGELPFFS  393
               Y AG V+F+EGD  D  Y++ SG ++    L  GR  E I+     G   GEL    
Sbjct  1    LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGR--EQILAVLGPGDFFGELALLG  58

Query  394  ETRRTATVKAEQDCVTWCLNADKWKQLREE  423
               R+ATV A  D     +  + + +L E 
Sbjct  59   GEPRSATVVALTDSELLVIPREDFLELLER  88



Lambda      K        H        a         alpha
   0.323    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00031263

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00031264

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00031265

Length=170
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:373825 pfam15406, PH_6, Pleckstrin homology domain. This Plec...  76.8    2e-19


>CDD:373825 pfam15406, PH_6, Pleckstrin homology domain.  This Pleckstrin 
homology domain is found in some fungal species.
Length=112

 Score = 76.8 bits (189),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 44/67 (66%), Gaps = 5/67 (7%)

Query  94   FSKRFFYFSNDPVEAKQLSVFQQNEKPA----VANPIVAWATQTGKGLLFLTKRAEDKTT  149
            ++K+FF+F  D VE K LS + ++EKP      A+   AWA++TGKGLLF +K   DK +
Sbjct  4    YTKKFFWFGTDAVEPKALSSYLKSEKPTESAEDAHHNAAWASETGKGLLFFSK-KGDKAS  62

Query  150  PAGIFNL  156
            P G+ NL
Sbjct  63   PVGVINL  69



Lambda      K        H        a         alpha
   0.309    0.125    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00031266

Length=245


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.142    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 261103040


Query= TCONS_00035463

Length=170
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:373825 pfam15406, PH_6, Pleckstrin homology domain. This Plec...  76.8    2e-19


>CDD:373825 pfam15406, PH_6, Pleckstrin homology domain.  This Pleckstrin 
homology domain is found in some fungal species.
Length=112

 Score = 76.8 bits (189),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 44/67 (66%), Gaps = 5/67 (7%)

Query  94   FSKRFFYFSNDPVEAKQLSVFQQNEKPA----VANPIVAWATQTGKGLLFLTKRAEDKTT  149
            ++K+FF+F  D VE K LS + ++EKP      A+   AWA++TGKGLLF +K   DK +
Sbjct  4    YTKKFFWFGTDAVEPKALSSYLKSEKPTESAEDAHHNAAWASETGKGLLFFSK-KGDKAS  62

Query  150  PAGIFNL  156
            P G+ NL
Sbjct  63   PVGVINL  69



Lambda      K        H        a         alpha
   0.309    0.125    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00031267

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00031268

Length=541


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.142    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681329700


Query= TCONS_00035464

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.142    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00031269

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.143    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00031270

Length=241


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.143    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00031271

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.140    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00031272

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.143    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00031273

Length=218


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.145    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00031281

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF560...  78.0    1e-18


>CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF5601).  This 
domain is found in the catalytic core RABEX-5 present in 
Homo sapiens. RABEX, also known as Rab GTPase exchange factors, 
regulate endocytic trafficking through activation of the 
Rab families RAB5, RAB21 and RAB22. The domain is helical in 
nature.
Length=65

 Score = 78.0 bits (193),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 0/65 (0%)

Query  321  KFLRSFLHEFGKRQWMVHEQVKIISDFLTFITHKMAMCEVWRDVSDSEFDNAKEGMEKLV  380
            K +RSF+  F      + EQ +++ DF  F+  ++    +W+  SD + +   +G+EK +
Sbjct  1    KQIRSFIERFQNLDSTIDEQSELVQDFYQFMADRLLSHPLWKGASDEQLEQLLDGVEKYI  60

Query  381  MNRLY  385
            M +LY
Sbjct  61   MTKLY  65



Lambda      K        H        a         alpha
   0.311    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00035465

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00031275

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395594 pfam00733, Asn_synthase, Asparagine synthase. This fam...  75.0    5e-16


>CDD:395594 pfam00733, Asn_synthase, Asparagine synthase.  This family is 
always found associated with pfam00310. Members of this family 
catalyze the conversion of aspartate to asparagine.
Length=279

 Score = 75.0 bits (185),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 86/265 (32%), Gaps = 79/265 (30%)

Query  22   ELERRLRQSLHLRIQKVPEPPSITTSDVKVAVLFSGGLD----CTLLARVSHDILPKNES  77
            EL   L  ++  R++          +DV V    SGGLD      L AR S         
Sbjct  1    ELRELLEDAVARRLR----------ADVPVGAFLSGGLDSSSIAALAARQSP------SP  44

Query  78   IDLLNVAFENPRVAAAAAGKE-----GATLSVYESCPDRITGRAAFAELQRVCPERNWRF  132
            +   ++ FE      A   +E     G            +T       L  V        
Sbjct  45   LHTFSIGFEGRGYDEAPYAREVAEHLGTDHHELV-----VTPEDLLDALPDVI-------  92

Query  133  VAIDIPYTETVAHRDMVKRLMRPHNTEMDLSIACALYFASRARGMAVNSQDSSSEPTQYT  192
              +D P+ +  A                       LY  SR        +          
Sbjct  93   WHLDEPFADPSAI---------------------PLYLLSRL----ARRKGV--------  119

Query  193  SPARVLLSGLGADELFAGYARHGVAFARDGFRGLIDEIHLDVSRLGKRNLGRDDRILSNW  252
               +V+LSG GADELF GY  +      D  R     ++LD+  L   +L R DR+    
Sbjct  120  ---KVVLSGEGADELFGGYPFY---KGEDPLRR---MLYLDLKTLLPGDLLRADRMSMAH  170

Query  253  GREARYPFLDEDFVSYVLEAPVWEK  277
            G E R PFLD   V Y L  P   K
Sbjct  171  GLEVRVPFLDHRLVEYALRLPPELK  195



Lambda      K        H        a         alpha
   0.319    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00035466

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00031276

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395594 pfam00733, Asn_synthase, Asparagine synthase. This fam...  75.0    5e-16


>CDD:395594 pfam00733, Asn_synthase, Asparagine synthase.  This family is 
always found associated with pfam00310. Members of this family 
catalyze the conversion of aspartate to asparagine.
Length=279

 Score = 75.0 bits (185),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 86/265 (32%), Gaps = 79/265 (30%)

Query  22   ELERRLRQSLHLRIQKVPEPPSITTSDVKVAVLFSGGLD----CTLLARVSHDILPKNES  77
            EL   L  ++  R++          +DV V    SGGLD      L AR S         
Sbjct  1    ELRELLEDAVARRLR----------ADVPVGAFLSGGLDSSSIAALAARQSP------SP  44

Query  78   IDLLNVAFENPRVAAAAAGKE-----GATLSVYESCPDRITGRAAFAELQRVCPERNWRF  132
            +   ++ FE      A   +E     G            +T       L  V        
Sbjct  45   LHTFSIGFEGRGYDEAPYAREVAEHLGTDHHELV-----VTPEDLLDALPDVI-------  92

Query  133  VAIDIPYTETVAHRDMVKRLMRPHNTEMDLSIACALYFASRARGMAVNSQDSSSEPTQYT  192
              +D P+ +  A                       LY  SR        +          
Sbjct  93   WHLDEPFADPSAI---------------------PLYLLSRL----ARRKGV--------  119

Query  193  SPARVLLSGLGADELFAGYARHGVAFARDGFRGLIDEIHLDVSRLGKRNLGRDDRILSNW  252
               +V+LSG GADELF GY  +      D  R     ++LD+  L   +L R DR+    
Sbjct  120  ---KVVLSGEGADELFGGYPFY---KGEDPLRR---MLYLDLKTLLPGDLLRADRMSMAH  170

Query  253  GREARYPFLDEDFVSYVLEAPVWEK  277
            G E R PFLD   V Y L  P   K
Sbjct  171  GLEVRVPFLDHRLVEYALRLPPELK  195



Lambda      K        H        a         alpha
   0.319    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00031277

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00031278

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395594 pfam00733, Asn_synthase, Asparagine synthase. This fam...  75.0    5e-16


>CDD:395594 pfam00733, Asn_synthase, Asparagine synthase.  This family is 
always found associated with pfam00310. Members of this family 
catalyze the conversion of aspartate to asparagine.
Length=279

 Score = 75.0 bits (185),  Expect = 5e-16, Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 86/265 (32%), Gaps = 79/265 (30%)

Query  22   ELERRLRQSLHLRIQKVPEPPSITTSDVKVAVLFSGGLD----CTLLARVSHDILPKNES  77
            EL   L  ++  R++          +DV V    SGGLD      L AR S         
Sbjct  1    ELRELLEDAVARRLR----------ADVPVGAFLSGGLDSSSIAALAARQSP------SP  44

Query  78   IDLLNVAFENPRVAAAAAGKE-----GATLSVYESCPDRITGRAAFAELQRVCPERNWRF  132
            +   ++ FE      A   +E     G            +T       L  V        
Sbjct  45   LHTFSIGFEGRGYDEAPYAREVAEHLGTDHHELV-----VTPEDLLDALPDVI-------  92

Query  133  VAIDIPYTETVAHRDMVKRLMRPHNTEMDLSIACALYFASRARGMAVNSQDSSSEPTQYT  192
              +D P+ +  A                       LY  SR        +          
Sbjct  93   WHLDEPFADPSAI---------------------PLYLLSRL----ARRKGV--------  119

Query  193  SPARVLLSGLGADELFAGYARHGVAFARDGFRGLIDEIHLDVSRLGKRNLGRDDRILSNW  252
               +V+LSG GADELF GY  +      D  R     ++LD+  L   +L R DR+    
Sbjct  120  ---KVVLSGEGADELFGGYPFY---KGEDPLRR---MLYLDLKTLLPGDLLRADRMSMAH  170

Query  253  GREARYPFLDEDFVSYVLEAPVWEK  277
            G E R PFLD   V Y L  P   K
Sbjct  171  GLEVRVPFLDHRLVEYALRLPPELK  195



Lambda      K        H        a         alpha
   0.319    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00031279

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  136     5e-39
CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF560...  78.0    1e-18


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 136 bits (345),  Expect = 5e-39, Method: Composition-based stats.
 Identities = 48/103 (47%), Positives = 69/103 (67%), Gaps = 1/103 (1%)

Query  461  LNLAQQELLKINGYRAPRDKVICILNCCKVIFGLLKNSK-QADTSADSFVPLLIYVVLQA  519
               AQQEL K+N  ++PR+K+ C+L  CK+I   L  S       AD  +P+LIYV+++A
Sbjct  1    WEQAQQELKKLNEAKSPREKLKCLLRTCKLITEALSKSNRDESLGADDLLPILIYVLIRA  60

Query  520  RPDHLVSNIQYILRFRNQDKLGGEAGYYLSSLSGAIQFIETLD  562
             P +L SN+Q+I  FR+ D L GE GYYL++L  A++FIE+LD
Sbjct  61   NPPNLYSNLQFISEFRDPDLLSGEEGYYLTTLEAALEFIESLD  103


>CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF5601).  This 
domain is found in the catalytic core RABEX-5 present in 
Homo sapiens. RABEX, also known as Rab GTPase exchange factors, 
regulate endocytic trafficking through activation of the 
Rab families RAB5, RAB21 and RAB22. The domain is helical in 
nature.
Length=65

 Score = 78.0 bits (193),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 0/65 (0%)

Query  321  KFLRSFLHEFGKRQWMVHEQVKIISDFLTFITHKMAMCEVWRDVSDSEFDNAKEGMEKLV  380
            K +RSF+  F      + EQ +++ DF  F+  ++    +W+  SD + +   +G+EK +
Sbjct  1    KQIRSFIERFQNLDSTIDEQSELVQDFYQFMADRLLSHPLWKGASDEQLEQLLDGVEKYI  60

Query  381  MNRLY  385
            M +LY
Sbjct  61   MTKLY  65



Lambda      K        H        a         alpha
   0.312    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 703875588


Query= TCONS_00031280

Length=781
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  131     7e-37
CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF560...  79.2    8e-19


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 131 bits (333),  Expect = 7e-37, Method: Composition-based stats.
 Identities = 45/98 (46%), Positives = 67/98 (68%), Gaps = 1/98 (1%)

Query  483  EELLKINGYRAPRDKVICILNCCKVIFGLLKNSK-QADTSADSFVPLLIYVVLQARPDHL  541
            +EL K+N  ++PR+K+ C+L  CK+I   L  S       AD  +P+LIYV+++A P +L
Sbjct  6    QELKKLNEAKSPREKLKCLLRTCKLITEALSKSNRDESLGADDLLPILIYVLIRANPPNL  65

Query  542  VSNIQYILRFRNQDKLGGEAGYYLSSLSGAIQFIETLD  579
             SN+Q+I  FR+ D L GE GYYL++L  A++FIE+LD
Sbjct  66   YSNLQFISEFRDPDLLSGEEGYYLTTLEAALEFIESLD  103


>CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF5601).  This 
domain is found in the catalytic core RABEX-5 present in 
Homo sapiens. RABEX, also known as Rab GTPase exchange factors, 
regulate endocytic trafficking through activation of the 
Rab families RAB5, RAB21 and RAB22. The domain is helical in 
nature.
Length=65

 Score = 79.2 bits (196),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 0/65 (0%)

Query  321  KFLRSFLHEFGKRQWMVHEQVKIISDFLTFITHKMAMCEVWRDVSDSEFDNAKEGMEKLV  380
            K +RSF+  F      + EQ +++ DF  F+  ++    +W+  SD + +   +G+EK +
Sbjct  1    KQIRSFIERFQNLDSTIDEQSELVQDFYQFMADRLLSHPLWKGASDEQLEQLLDGVEKYI  60

Query  381  MNRLY  385
            M +LY
Sbjct  61   MTKLY  65



Lambda      K        H        a         alpha
   0.312    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 999689424


Query= TCONS_00035467

Length=764
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  136     2e-38
CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF560...  78.8    1e-18


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 136 bits (345),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 48/103 (47%), Positives = 69/103 (67%), Gaps = 1/103 (1%)

Query  461  LNLAQQELLKINGYRAPRDKVICILNCCKVIFGLLKNSK-QADTSADSFVPLLIYVVLQA  519
               AQQEL K+N  ++PR+K+ C+L  CK+I   L  S       AD  +P+LIYV+++A
Sbjct  1    WEQAQQELKKLNEAKSPREKLKCLLRTCKLITEALSKSNRDESLGADDLLPILIYVLIRA  60

Query  520  RPDHLVSNIQYILRFRNQDKLGGEAGYYLSSLSGAIQFIETLD  562
             P +L SN+Q+I  FR+ D L GE GYYL++L  A++FIE+LD
Sbjct  61   NPPNLYSNLQFISEFRDPDLLSGEEGYYLTTLEAALEFIESLD  103


>CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF5601).  This 
domain is found in the catalytic core RABEX-5 present in 
Homo sapiens. RABEX, also known as Rab GTPase exchange factors, 
regulate endocytic trafficking through activation of the 
Rab families RAB5, RAB21 and RAB22. The domain is helical in 
nature.
Length=65

 Score = 78.8 bits (195),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 0/65 (0%)

Query  321  KFLRSFLHEFGKRQWMVHEQVKIISDFLTFITHKMAMCEVWRDVSDSEFDNAKEGMEKLV  380
            K +RSF+  F      + EQ +++ DF  F+  ++    +W+  SD + +   +G+EK +
Sbjct  1    KQIRSFIERFQNLDSTIDEQSELVQDFYQFMADRLLSHPLWKGASDEQLEQLLDGVEKYI  60

Query  381  MNRLY  385
            M +LY
Sbjct  61   MTKLY  65



Lambda      K        H        a         alpha
   0.311    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 974951840


Query= TCONS_00031283

Length=766
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  136     2e-38
CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF560...  78.8    1e-18


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 136 bits (345),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 48/103 (47%), Positives = 69/103 (67%), Gaps = 1/103 (1%)

Query  461  LNLAQQELLKINGYRAPRDKVICILNCCKVIFGLLKNSK-QADTSADSFVPLLIYVVLQA  519
               AQQEL K+N  ++PR+K+ C+L  CK+I   L  S       AD  +P+LIYV+++A
Sbjct  1    WEQAQQELKKLNEAKSPREKLKCLLRTCKLITEALSKSNRDESLGADDLLPILIYVLIRA  60

Query  520  RPDHLVSNIQYILRFRNQDKLGGEAGYYLSSLSGAIQFIETLD  562
             P +L SN+Q+I  FR+ D L GE GYYL++L  A++FIE+LD
Sbjct  61   NPPNLYSNLQFISEFRDPDLLSGEEGYYLTTLEAALEFIESLD  103


>CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF5601).  This 
domain is found in the catalytic core RABEX-5 present in 
Homo sapiens. RABEX, also known as Rab GTPase exchange factors, 
regulate endocytic trafficking through activation of the 
Rab families RAB5, RAB21 and RAB22. The domain is helical in 
nature.
Length=65

 Score = 78.8 bits (195),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 0/65 (0%)

Query  321  KFLRSFLHEFGKRQWMVHEQVKIISDFLTFITHKMAMCEVWRDVSDSEFDNAKEGMEKLV  380
            K +RSF+  F      + EQ +++ DF  F+  ++    +W+  SD + +   +G+EK +
Sbjct  1    KQIRSFIERFQNLDSTIDEQSELVQDFYQFMADRLLSHPLWKGASDEQLEQLLDGVEKYI  60

Query  381  MNRLY  385
            M +LY
Sbjct  61   MTKLY  65



Lambda      K        H        a         alpha
   0.311    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 977862144


Query= TCONS_00031282

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  121     1e-33
CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF560...  79.2    6e-19


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 121 bits (307),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 42/92 (46%), Positives = 60/92 (65%), Gaps = 1/92 (1%)

Query  461  LNLAQQELLKINGYRAPRDKVICILNCCKVIFGLLKNSK-QADTSADSFVPLLIYVVLQA  519
               AQQEL K+N  ++PR+K+ C+L  CK+I   L  S       AD  +P+LIYV+++A
Sbjct  1    WEQAQQELKKLNEAKSPREKLKCLLRTCKLITEALSKSNRDESLGADDLLPILIYVLIRA  60

Query  520  RPDHLVSNIQYILRFRNQDKLGGEAGYYLSSL  551
             P +L SN+Q+I  FR+ D L GE GYYL++L
Sbjct  61   NPPNLYSNLQFISEFRDPDLLSGEEGYYLTTL  92


>CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF5601).  This 
domain is found in the catalytic core RABEX-5 present in 
Homo sapiens. RABEX, also known as Rab GTPase exchange factors, 
regulate endocytic trafficking through activation of the 
Rab families RAB5, RAB21 and RAB22. The domain is helical in 
nature.
Length=65

 Score = 79.2 bits (196),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 0/65 (0%)

Query  321  KFLRSFLHEFGKRQWMVHEQVKIISDFLTFITHKMAMCEVWRDVSDSEFDNAKEGMEKLV  380
            K +RSF+  F      + EQ +++ DF  F+  ++    +W+  SD + +   +G+EK +
Sbjct  1    KQIRSFIERFQNLDSTIDEQSELVQDFYQFMADRLLSHPLWKGASDEQLEQLLDGVEKYI  60

Query  381  MNRLY  385
            M +LY
Sbjct  61   MTKLY  65



Lambda      K        H        a         alpha
   0.313    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 736753004


Query= TCONS_00035469

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00035468

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  116     1e-31
CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF560...  78.8    8e-19


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 116 bits (294),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 40/88 (45%), Positives = 56/88 (64%), Gaps = 1/88 (1%)

Query  461  LNLAQQELLKINGYRAPRDKVICILNCCKVIFGLLKNSK-QADTSADSFVPLLIYVVLQA  519
               AQQEL K+N  ++PR+K+ C+L  CK+I   L  S       AD  +P+LIYV+++A
Sbjct  1    WEQAQQELKKLNEAKSPREKLKCLLRTCKLITEALSKSNRDESLGADDLLPILIYVLIRA  60

Query  520  RPDHLVSNIQYILRFRNQDKLGGEAGYY  547
             P +L SN+Q+I  FR+ D L GE GYY
Sbjct  61   NPPNLYSNLQFISEFRDPDLLSGEEGYY  88


>CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF5601).  This 
domain is found in the catalytic core RABEX-5 present in 
Homo sapiens. RABEX, also known as Rab GTPase exchange factors, 
regulate endocytic trafficking through activation of the 
Rab families RAB5, RAB21 and RAB22. The domain is helical in 
nature.
Length=65

 Score = 78.8 bits (195),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 0/65 (0%)

Query  321  KFLRSFLHEFGKRQWMVHEQVKIISDFLTFITHKMAMCEVWRDVSDSEFDNAKEGMEKLV  380
            K +RSF+  F      + EQ +++ DF  F+  ++    +W+  SD + +   +G+EK +
Sbjct  1    KQIRSFIERFQNLDSTIDEQSELVQDFYQFMADRLLSHPLWKGASDEQLEQLLDGVEKYI  60

Query  381  MNRLY  385
            M +LY
Sbjct  61   MTKLY  65



Lambda      K        H        a         alpha
   0.313    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 783080272


Query= TCONS_00035470

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  117     6e-32
CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF560...  79.2    6e-19


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 117 bits (295),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 39/87 (45%), Positives = 58/87 (67%), Gaps = 1/87 (1%)

Query  483  EELLKINGYRAPRDKVICILNCCKVIFGLLKNSK-QADTSADSFVPLLIYVVLQARPDHL  541
            +EL K+N  ++PR+K+ C+L  CK+I   L  S       AD  +P+LIYV+++A P +L
Sbjct  6    QELKKLNEAKSPREKLKCLLRTCKLITEALSKSNRDESLGADDLLPILIYVLIRANPPNL  65

Query  542  VSNIQYILRFRNQDKLGGEAGYYLSSL  568
             SN+Q+I  FR+ D L GE GYYL++L
Sbjct  66   YSNLQFISEFRDPDLLSGEEGYYLTTL  92


>CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF5601).  This 
domain is found in the catalytic core RABEX-5 present in 
Homo sapiens. RABEX, also known as Rab GTPase exchange factors, 
regulate endocytic trafficking through activation of the 
Rab families RAB5, RAB21 and RAB22. The domain is helical in 
nature.
Length=65

 Score = 79.2 bits (196),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 0/65 (0%)

Query  321  KFLRSFLHEFGKRQWMVHEQVKIISDFLTFITHKMAMCEVWRDVSDSEFDNAKEGMEKLV  380
            K +RSF+  F      + EQ +++ DF  F+  ++    +W+  SD + +   +G+EK +
Sbjct  1    KQIRSFIERFQNLDSTIDEQSELVQDFYQFMADRLLSHPLWKGASDEQLEQLLDGVEKYI  60

Query  381  MNRLY  385
            M +LY
Sbjct  61   MTKLY  65



Lambda      K        H        a         alpha
   0.313    0.129    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0868    0.140     1.90     42.6     43.6 

Effective search space used: 762158280


Query= TCONS_00031284

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF560...  78.0    1e-18


>CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF5601).  This 
domain is found in the catalytic core RABEX-5 present in 
Homo sapiens. RABEX, also known as Rab GTPase exchange factors, 
regulate endocytic trafficking through activation of the 
Rab families RAB5, RAB21 and RAB22. The domain is helical in 
nature.
Length=65

 Score = 78.0 bits (193),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 0/65 (0%)

Query  321  KFLRSFLHEFGKRQWMVHEQVKIISDFLTFITHKMAMCEVWRDVSDSEFDNAKEGMEKLV  380
            K +RSF+  F      + EQ +++ DF  F+  ++    +W+  SD + +   +G+EK +
Sbjct  1    KQIRSFIERFQNLDSTIDEQSELVQDFYQFMADRLLSHPLWKGASDEQLEQLLDGVEKYI  60

Query  381  MNRLY  385
            M +LY
Sbjct  61   MTKLY  65



Lambda      K        H        a         alpha
   0.311    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 620767060


Query= TCONS_00035471

Length=756
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  136     2e-38
CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF560...  79.2    7e-19


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 136 bits (345),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 48/103 (47%), Positives = 69/103 (67%), Gaps = 1/103 (1%)

Query  461  LNLAQQELLKINGYRAPRDKVICILNCCKVIFGLLKNSK-QADTSADSFVPLLIYVVLQA  519
               AQQEL K+N  ++PR+K+ C+L  CK+I   L  S       AD  +P+LIYV+++A
Sbjct  1    WEQAQQELKKLNEAKSPREKLKCLLRTCKLITEALSKSNRDESLGADDLLPILIYVLIRA  60

Query  520  RPDHLVSNIQYILRFRNQDKLGGEAGYYLSSLSGAIQFIETLD  562
             P +L SN+Q+I  FR+ D L GE GYYL++L  A++FIE+LD
Sbjct  61   NPPNLYSNLQFISEFRDPDLLSGEEGYYLTTLEAALEFIESLD  103


>CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF5601).  This 
domain is found in the catalytic core RABEX-5 present in 
Homo sapiens. RABEX, also known as Rab GTPase exchange factors, 
regulate endocytic trafficking through activation of the 
Rab families RAB5, RAB21 and RAB22. The domain is helical in 
nature.
Length=65

 Score = 79.2 bits (196),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 0/65 (0%)

Query  321  KFLRSFLHEFGKRQWMVHEQVKIISDFLTFITHKMAMCEVWRDVSDSEFDNAKEGMEKLV  380
            K +RSF+  F      + EQ +++ DF  F+  ++    +W+  SD + +   +G+EK +
Sbjct  1    KQIRSFIERFQNLDSTIDEQSELVQDFYQFMADRLLSHPLWKGASDEQLEQLLDGVEKYI  60

Query  381  MNRLY  385
            M +LY
Sbjct  61   MTKLY  65



Lambda      K        H        a         alpha
   0.312    0.128    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 963310624


Query= TCONS_00031286

Length=755
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  90.3    2e-22
CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF560...  79.2    8e-19


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 90.3 bits (225),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 37/103 (36%), Positives = 51/103 (50%), Gaps = 22/103 (21%)

Query  461  LNLAQQELLKINGYRAPRDKVICILNCCKVIFGLLKNSK-QADTSADSF-----------  508
               AQQEL K+N  ++PR+K+ C+L  CK+I   L  S       AD             
Sbjct  1    WEQAQQELKKLNEAKSPREKLKCLLRTCKLITEALSKSNRDESLGADDLLPILIYVLIRA  60

Query  509  ----------YILRFRNQDKLGGEAGYYLSSLSGAIQFIETLD  541
                      +I  FR+ D L GE GYYL++L  A++FIE+LD
Sbjct  61   NPPNLYSNLQFISEFRDPDLLSGEEGYYLTTLEAALEFIESLD  103


>CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF5601).  This 
domain is found in the catalytic core RABEX-5 present in 
Homo sapiens. RABEX, also known as Rab GTPase exchange factors, 
regulate endocytic trafficking through activation of the 
Rab families RAB5, RAB21 and RAB22. The domain is helical in 
nature.
Length=65

 Score = 79.2 bits (196),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 0/65 (0%)

Query  321  KFLRSFLHEFGKRQWMVHEQVKIISDFLTFITHKMAMCEVWRDVSDSEFDNAKEGMEKLV  380
            K +RSF+  F      + EQ +++ DF  F+  ++    +W+  SD + +   +G+EK +
Sbjct  1    KQIRSFIERFQNLDSTIDEQSELVQDFYQFMADRLLSHPLWKGASDEQLEQLLDGVEKYI  60

Query  381  MNRLY  385
            M +LY
Sbjct  61   MTKLY  65



Lambda      K        H        a         alpha
   0.311    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 961855472


Query= TCONS_00031285

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00031287

Length=776
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) dom...  136     2e-38
CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF560...  79.2    8e-19


>CDD:460489 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain.  This 
domain acts as a GDP-GTP exchange factor (GEF). It activates 
Rab GTPases by stimulating the release of GDP and allowing 
GTP to bind.
Length=104

 Score = 136 bits (345),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 48/103 (47%), Positives = 69/103 (67%), Gaps = 1/103 (1%)

Query  461  LNLAQQELLKINGYRAPRDKVICILNCCKVIFGLLKNSK-QADTSADSFVPLLIYVVLQA  519
               AQQEL K+N  ++PR+K+ C+L  CK+I   L  S       AD  +P+LIYV+++A
Sbjct  1    WEQAQQELKKLNEAKSPREKLKCLLRTCKLITEALSKSNRDESLGADDLLPILIYVLIRA  60

Query  520  RPDHLVSNIQYILRFRNQDKLGGEAGYYLSSLSGAIQFIETLD  562
             P +L SN+Q+I  FR+ D L GE GYYL++L  A++FIE+LD
Sbjct  61   NPPNLYSNLQFISEFRDPDLLSGEEGYYLTTLEAALEFIESLD  103


>CDD:465668 pfam18151, DUF5601, Domain of unknown function (DUF5601).  This 
domain is found in the catalytic core RABEX-5 present in 
Homo sapiens. RABEX, also known as Rab GTPase exchange factors, 
regulate endocytic trafficking through activation of the 
Rab families RAB5, RAB21 and RAB22. The domain is helical in 
nature.
Length=65

 Score = 79.2 bits (196),  Expect = 8e-19, Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 0/65 (0%)

Query  321  KFLRSFLHEFGKRQWMVHEQVKIISDFLTFITHKMAMCEVWRDVSDSEFDNAKEGMEKLV  380
            K +RSF+  F      + EQ +++ DF  F+  ++    +W+  SD + +   +G+EK +
Sbjct  1    KQIRSFIERFQNLDSTIDEQSELVQDFYQFMADRLLSHPLWKGASDEQLEQLLDGVEKYI  60

Query  381  MNRLY  385
            M +LY
Sbjct  61   MTKLY  65



Lambda      K        H        a         alpha
   0.311    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 992413664


Query= TCONS_00035472

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00031288

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.138    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00031289

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.121    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00031293

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00031290

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00031292

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460408 pfam01988, VIT1, VIT family. This family includes the ...  208     2e-67


>CDD:460408 pfam01988, VIT1, VIT family.  This family includes the vacuolar 
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron 
transporter VIT1.
Length=212

 Score = 208 bits (531),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 97/206 (47%), Gaps = 9/206 (4%)

Query  79   ISDAILGLSDGLTVPFALSAGLSALG-NTKVVVLGGLAELAAGAISMGLGGYVGAKSEAE  137
            +  A+LG +DGL   FAL AG++    ++KVV+L GLA L AGAISM  G YV   S+ +
Sbjct  1    LRAAVLGANDGLVSTFALVAGVAGASLSSKVVLLAGLAGLVAGAISMAAGEYVSVSSQRD  60

Query  138  SYQTTVRETKELIETSPAETSTIVRDTFSAYDLPEAAISQINASLHASHDRLLDFLISFH  197
            + +  +   +  +E  P      + + + A  L E    Q+ A L  + D  LD ++   
Sbjct  61   TEEAELARERRELENDPEAELEELAEIYEARGLSEELARQVVAELLKNPDAFLDAMMREE  120

Query  198  HKETQPDCNQAWISAITLALGYFVGGFIPLIPYFMVDQVIVALYWSIGVMAVTLFAFGYI  257
                  +      +A+T  L + +GG IPL+PY  +   I AL  SI +  + LF  G +
Sbjct  121  LGIDPSEALANPKAALTSFLSFALGGLIPLLPYLFLPSGIPALIVSIILTLLALFLLGAV  180

Query  258  KTSVVRGWSGRDNIIAGIKGGVQMCF  283
            K  +             ++  ++M  
Sbjct  181  KARLGGAS--------PLRSALRMLL  198



Lambda      K        H        a         alpha
   0.319    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00035473

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.123    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00031291

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00031294

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00035475

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460408 pfam01988, VIT1, VIT family. This family includes the ...  208     2e-67


>CDD:460408 pfam01988, VIT1, VIT family.  This family includes the vacuolar 
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron 
transporter VIT1.
Length=212

 Score = 208 bits (531),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 97/206 (47%), Gaps = 9/206 (4%)

Query  79   ISDAILGLSDGLTVPFALSAGLSALG-NTKVVVLGGLAELAAGAISMGLGGYVGAKSEAE  137
            +  A+LG +DGL   FAL AG++    ++KVV+L GLA L AGAISM  G YV   S+ +
Sbjct  1    LRAAVLGANDGLVSTFALVAGVAGASLSSKVVLLAGLAGLVAGAISMAAGEYVSVSSQRD  60

Query  138  SYQTTVRETKELIETSPAETSTIVRDTFSAYDLPEAAISQINASLHASHDRLLDFLISFH  197
            + +  +   +  +E  P      + + + A  L E    Q+ A L  + D  LD ++   
Sbjct  61   TEEAELARERRELENDPEAELEELAEIYEARGLSEELARQVVAELLKNPDAFLDAMMREE  120

Query  198  HKETQPDCNQAWISAITLALGYFVGGFIPLIPYFMVDQVIVALYWSIGVMAVTLFAFGYI  257
                  +      +A+T  L + +GG IPL+PY  +   I AL  SI +  + LF  G +
Sbjct  121  LGIDPSEALANPKAALTSFLSFALGGLIPLLPYLFLPSGIPALIVSIILTLLALFLLGAV  180

Query  258  KTSVVRGWSGRDNIIAGIKGGVQMCF  283
            K  +             ++  ++M  
Sbjct  181  KARLGGAS--------PLRSALRMLL  198



Lambda      K        H        a         alpha
   0.319    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00035474

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460408 pfam01988, VIT1, VIT family. This family includes the ...  208     2e-67


>CDD:460408 pfam01988, VIT1, VIT family.  This family includes the vacuolar 
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron 
transporter VIT1.
Length=212

 Score = 208 bits (531),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 97/206 (47%), Gaps = 9/206 (4%)

Query  79   ISDAILGLSDGLTVPFALSAGLSALG-NTKVVVLGGLAELAAGAISMGLGGYVGAKSEAE  137
            +  A+LG +DGL   FAL AG++    ++KVV+L GLA L AGAISM  G YV   S+ +
Sbjct  1    LRAAVLGANDGLVSTFALVAGVAGASLSSKVVLLAGLAGLVAGAISMAAGEYVSVSSQRD  60

Query  138  SYQTTVRETKELIETSPAETSTIVRDTFSAYDLPEAAISQINASLHASHDRLLDFLISFH  197
            + +  +   +  +E  P      + + + A  L E    Q+ A L  + D  LD ++   
Sbjct  61   TEEAELARERRELENDPEAELEELAEIYEARGLSEELARQVVAELLKNPDAFLDAMMREE  120

Query  198  HKETQPDCNQAWISAITLALGYFVGGFIPLIPYFMVDQVIVALYWSIGVMAVTLFAFGYI  257
                  +      +A+T  L + +GG IPL+PY  +   I AL  SI +  + LF  G +
Sbjct  121  LGIDPSEALANPKAALTSFLSFALGGLIPLLPYLFLPSGIPALIVSIILTLLALFLLGAV  180

Query  258  KTSVVRGWSGRDNIIAGIKGGVQMCF  283
            K  +             ++  ++M  
Sbjct  181  KARLGGAS--------PLRSALRMLL  198



Lambda      K        H        a         alpha
   0.319    0.135    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00035476

Length=148
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460408 pfam01988, VIT1, VIT family. This family includes the ...  94.4    2e-25


>CDD:460408 pfam01988, VIT1, VIT family.  This family includes the vacuolar 
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron 
transporter VIT1.
Length=212

 Score = 94.4 bits (236),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 1/59 (2%)

Query  79   ISDAILGLSDGLTVPFALSAGLSALG-NTKVVVLGGLAELAAGAISMGLGGYVGAKSEA  136
            +  A+LG +DGL   FAL AG++    ++KVV+L GLA L AGAISM  G YV   S+ 
Sbjct  1    LRAAVLGANDGLVSTFALVAGVAGASLSSKVVLLAGLAGLVAGAISMAAGEYVSVSSQR  59



Lambda      K        H        a         alpha
   0.314    0.133    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00035478

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460408 pfam01988, VIT1, VIT family. This family includes the ...  204     3e-66


>CDD:460408 pfam01988, VIT1, VIT family.  This family includes the vacuolar 
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron 
transporter VIT1.
Length=212

 Score = 204 bits (522),  Expect = 3e-66, Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 97/206 (47%), Gaps = 9/206 (4%)

Query  75   ISDAILGLSDGLTVPFALSAGLSALG-NTKVVVLGGLAELAAGAISMGLGGYVGAKSEAE  133
            +  A+LG +DGL   FAL AG++    ++KVV+L GLA L AGAISM  G YV   S+ +
Sbjct  1    LRAAVLGANDGLVSTFALVAGVAGASLSSKVVLLAGLAGLVAGAISMAAGEYVSVSSQRD  60

Query  134  SYQTTVRETKELIETSPAETSTIVRDTFSAYDLPEAAISQINASLHASHDRLLDFLISFH  193
            + +  +   +  +E  P      + + + A  L E    Q+ A L  + D  LD ++   
Sbjct  61   TEEAELARERRELENDPEAELEELAEIYEARGLSEELARQVVAELLKNPDAFLDAMMREE  120

Query  194  HKETQPDCNQAWISAITLALGYFVGGFIPLIPYFMVDQVIVALYWSIGVMAVTLFAFGYI  253
                  +      +A+T  L + +GG IPL+PY  +   I AL  SI +  + LF  G +
Sbjct  121  LGIDPSEALANPKAALTSFLSFALGGLIPLLPYLFLPSGIPALIVSIILTLLALFLLGAV  180

Query  254  KTSVVRGWSGRDNIIAGIKGGVQMCF  279
            K  +             ++  ++M  
Sbjct  181  KARLGGAS--------PLRSALRMLL  198



Lambda      K        H        a         alpha
   0.319    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00035477

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460408 pfam01988, VIT1, VIT family. This family includes the ...  204     3e-66


>CDD:460408 pfam01988, VIT1, VIT family.  This family includes the vacuolar 
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron 
transporter VIT1.
Length=212

 Score = 204 bits (522),  Expect = 3e-66, Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 97/206 (47%), Gaps = 9/206 (4%)

Query  75   ISDAILGLSDGLTVPFALSAGLSALG-NTKVVVLGGLAELAAGAISMGLGGYVGAKSEAE  133
            +  A+LG +DGL   FAL AG++    ++KVV+L GLA L AGAISM  G YV   S+ +
Sbjct  1    LRAAVLGANDGLVSTFALVAGVAGASLSSKVVLLAGLAGLVAGAISMAAGEYVSVSSQRD  60

Query  134  SYQTTVRETKELIETSPAETSTIVRDTFSAYDLPEAAISQINASLHASHDRLLDFLISFH  193
            + +  +   +  +E  P      + + + A  L E    Q+ A L  + D  LD ++   
Sbjct  61   TEEAELARERRELENDPEAELEELAEIYEARGLSEELARQVVAELLKNPDAFLDAMMREE  120

Query  194  HKETQPDCNQAWISAITLALGYFVGGFIPLIPYFMVDQVIVALYWSIGVMAVTLFAFGYI  253
                  +      +A+T  L + +GG IPL+PY  +   I AL  SI +  + LF  G +
Sbjct  121  LGIDPSEALANPKAALTSFLSFALGGLIPLLPYLFLPSGIPALIVSIILTLLALFLLGAV  180

Query  254  KTSVVRGWSGRDNIIAGIKGGVQMCF  279
            K  +             ++  ++M  
Sbjct  181  KARLGGAS--------PLRSALRMLL  198



Lambda      K        H        a         alpha
   0.319    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00031295

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00031301

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00031300

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  86.4    2e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 86.4 bits (214),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 30/195 (15%)

Query  200  LRHYFDNLYTQLPFFVETSFWTSVDAVYQSGGRFAKPFDHWILRLVLAI-----------  248
            L  +F N + Q P     SF      ++ S   +A P       L+LAI           
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPL------LLLAILALGALFSESP  54

Query  249  -----SSASTSYQPGDRDHQRALSLISGALKYAEEVLRPGSVVGIQGILLLAQYSFFDPN  303
                 SS +     G     RAL LI              S+  +Q +LLL  Y     +
Sbjct  55   TARSSSSLTDEAADGIHFFLRALILIHEDFSSPSS-----SLWILQALLLLELYELGTGD  109

Query  304  HFRSWYLVGTAVRAMVDLGLHQDPPLEELS---TPDRLDIRRIVYHCVYCLDRGVSTALE  360
                W   G A+R    LGLH+DP     S     +  ++RR ++   + LDR +S  L 
Sbjct  110  RKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILG  169

Query  361  RTISFSDASVNVALP  375
            R    SD+ +++ LP
Sbjct  170  RPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.320    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 814084080


Query= TCONS_00031296

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00031298

Length=238


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00031299

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  86.4    2e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 86.4 bits (214),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 30/195 (15%)

Query  200  LRHYFDNLYTQLPFFVETSFWTSVDAVYQSGGRFAKPFDHWILRLVLAI-----------  248
            L  +F N + Q P     SF      ++ S   +A P       L+LAI           
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPL------LLLAILALGALFSESP  54

Query  249  -----SSASTSYQPGDRDHQRALSLISGALKYAEEVLRPGSVVGIQGILLLAQYSFFDPN  303
                 SS +     G     RAL LI              S+  +Q +LLL  Y     +
Sbjct  55   TARSSSSLTDEAADGIHFFLRALILIHEDFSSPSS-----SLWILQALLLLELYELGTGD  109

Query  304  HFRSWYLVGTAVRAMVDLGLHQDPPLEELS---TPDRLDIRRIVYHCVYCLDRGVSTALE  360
                W   G A+R    LGLH+DP     S     +  ++RR ++   + LDR +S  L 
Sbjct  110  RKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILG  169

Query  361  RTISFSDASVNVALP  375
            R    SD+ +++ LP
Sbjct  170  RPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.320    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 814084080


Query= TCONS_00035479

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00031311

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  86.4    2e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 86.4 bits (214),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 30/195 (15%)

Query  200  LRHYFDNLYTQLPFFVETSFWTSVDAVYQSGGRFAKPFDHWILRLVLAI-----------  248
            L  +F N + Q P     SF      ++ S   +A P       L+LAI           
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPL------LLLAILALGALFSESP  54

Query  249  -----SSASTSYQPGDRDHQRALSLISGALKYAEEVLRPGSVVGIQGILLLAQYSFFDPN  303
                 SS +     G     RAL LI              S+  +Q +LLL  Y     +
Sbjct  55   TARSSSSLTDEAADGIHFFLRALILIHEDFSSPSS-----SLWILQALLLLELYELGTGD  109

Query  304  HFRSWYLVGTAVRAMVDLGLHQDPPLEELS---TPDRLDIRRIVYHCVYCLDRGVSTALE  360
                W   G A+R    LGLH+DP     S     +  ++RR ++   + LDR +S  L 
Sbjct  110  RKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILG  169

Query  361  RTISFSDASVNVALP  375
            R    SD+ +++ LP
Sbjct  170  RPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.320    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 814084080


Query= TCONS_00035480

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  86.4    2e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 86.4 bits (214),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 30/195 (15%)

Query  200  LRHYFDNLYTQLPFFVETSFWTSVDAVYQSGGRFAKPFDHWILRLVLAI-----------  248
            L  +F N + Q P     SF      ++ S   +A P       L+LAI           
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPL------LLLAILALGALFSESP  54

Query  249  -----SSASTSYQPGDRDHQRALSLISGALKYAEEVLRPGSVVGIQGILLLAQYSFFDPN  303
                 SS +     G     RAL LI              S+  +Q +LLL  Y     +
Sbjct  55   TARSSSSLTDEAADGIHFFLRALILIHEDFSSPSS-----SLWILQALLLLELYELGTGD  109

Query  304  HFRSWYLVGTAVRAMVDLGLHQDPPLEELS---TPDRLDIRRIVYHCVYCLDRGVSTALE  360
                W   G A+R    LGLH+DP     S     +  ++RR ++   + LDR +S  L 
Sbjct  110  RKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILG  169

Query  361  RTISFSDASVNVALP  375
            R    SD+ +++ LP
Sbjct  170  RPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.320    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 814084080


Query= TCONS_00031303

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  86.4    2e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 86.4 bits (214),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 30/195 (15%)

Query  182  LRHYFDNLYTQLPFFVETSFWTSVDAVYQSGGRFAKPFDHWILRLVLAI-----------  230
            L  +F N + Q P     SF      ++ S   +A P       L+LAI           
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPL------LLLAILALGALFSESP  54

Query  231  -----SSASTSYQPGDRDHQRALSLISGALKYAEEVLRPGSVVGIQGILLLAQYSFFDPN  285
                 SS +     G     RAL LI              S+  +Q +LLL  Y     +
Sbjct  55   TARSSSSLTDEAADGIHFFLRALILIHEDFSSPSS-----SLWILQALLLLELYELGTGD  109

Query  286  HFRSWYLVGTAVRAMVDLGLHQDPPLEELS---TPDRLDIRRIVYHCVYCLDRGVSTALE  342
                W   G A+R    LGLH+DP     S     +  ++RR ++   + LDR +S  L 
Sbjct  110  RKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILG  169

Query  343  RTISFSDASVNVALP  357
            R    SD+ +++ LP
Sbjct  170  RPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.320    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787537860


Query= TCONS_00031302

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  86.4    2e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 86.4 bits (214),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 30/195 (15%)

Query  182  LRHYFDNLYTQLPFFVETSFWTSVDAVYQSGGRFAKPFDHWILRLVLAI-----------  230
            L  +F N + Q P     SF      ++ S   +A P       L+LAI           
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPL------LLLAILALGALFSESP  54

Query  231  -----SSASTSYQPGDRDHQRALSLISGALKYAEEVLRPGSVVGIQGILLLAQYSFFDPN  285
                 SS +     G     RAL LI              S+  +Q +LLL  Y     +
Sbjct  55   TARSSSSLTDEAADGIHFFLRALILIHEDFSSPSS-----SLWILQALLLLELYELGTGD  109

Query  286  HFRSWYLVGTAVRAMVDLGLHQDPPLEELS---TPDRLDIRRIVYHCVYCLDRGVSTALE  342
                W   G A+R    LGLH+DP     S     +  ++RR ++   + LDR +S  L 
Sbjct  110  RKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILG  169

Query  343  RTISFSDASVNVALP  357
            R    SD+ +++ LP
Sbjct  170  RPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.320    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0769    0.140     1.90     42.6     43.6 

Effective search space used: 787537860


Query= TCONS_00031304

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00031310

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  86.4    2e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 86.4 bits (214),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 30/195 (15%)

Query  200  LRHYFDNLYTQLPFFVETSFWTSVDAVYQSGGRFAKPFDHWILRLVLAI-----------  248
            L  +F N + Q P     SF      ++ S   +A P       L+LAI           
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPL------LLLAILALGALFSESP  54

Query  249  -----SSASTSYQPGDRDHQRALSLISGALKYAEEVLRPGSVVGIQGILLLAQYSFFDPN  303
                 SS +     G     RAL LI              S+  +Q +LLL  Y     +
Sbjct  55   TARSSSSLTDEAADGIHFFLRALILIHEDFSSPSS-----SLWILQALLLLELYELGTGD  109

Query  304  HFRSWYLVGTAVRAMVDLGLHQDPPLEELS---TPDRLDIRRIVYHCVYCLDRGVSTALE  360
                W   G A+R    LGLH+DP     S     +  ++RR ++   + LDR +S  L 
Sbjct  110  RKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILG  169

Query  361  RTISFSDASVNVALP  375
            R    SD+ +++ LP
Sbjct  170  RPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.320    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 814084080


Query= TCONS_00031306

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  86.4    2e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 86.4 bits (214),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 30/195 (15%)

Query  182  LRHYFDNLYTQLPFFVETSFWTSVDAVYQSGGRFAKPFDHWILRLVLAI-----------  230
            L  +F N + Q P     SF      ++ S   +A P       L+LAI           
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPL------LLLAILALGALFSESP  54

Query  231  -----SSASTSYQPGDRDHQRALSLISGALKYAEEVLRPGSVVGIQGILLLAQYSFFDPN  285
                 SS +     G     RAL LI              S+  +Q +LLL  Y     +
Sbjct  55   TARSSSSLTDEAADGIHFFLRALILIHEDFSSPSS-----SLWILQALLLLELYELGTGD  109

Query  286  HFRSWYLVGTAVRAMVDLGLHQDPPLEELS---TPDRLDIRRIVYHCVYCLDRGVSTALE  342
                W   G A+R    LGLH+DP     S     +  ++RR ++   + LDR +S  L 
Sbjct  110  RKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILG  169

Query  343  RTISFSDASVNVALP  357
            R    SD+ +++ LP
Sbjct  170  RPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.320    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787537860


Query= TCONS_00031305

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  86.4    2e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 86.4 bits (214),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 30/195 (15%)

Query  182  LRHYFDNLYTQLPFFVETSFWTSVDAVYQSGGRFAKPFDHWILRLVLAI-----------  230
            L  +F N + Q P     SF      ++ S   +A P       L+LAI           
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPL------LLLAILALGALFSESP  54

Query  231  -----SSASTSYQPGDRDHQRALSLISGALKYAEEVLRPGSVVGIQGILLLAQYSFFDPN  285
                 SS +     G     RAL LI              S+  +Q +LLL  Y     +
Sbjct  55   TARSSSSLTDEAADGIHFFLRALILIHEDFSSPSS-----SLWILQALLLLELYELGTGD  109

Query  286  HFRSWYLVGTAVRAMVDLGLHQDPPLEELS---TPDRLDIRRIVYHCVYCLDRGVSTALE  342
                W   G A+R    LGLH+DP     S     +  ++RR ++   + LDR +S  L 
Sbjct  110  RKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILG  169

Query  343  RTISFSDASVNVALP  357
            R    SD+ +++ LP
Sbjct  170  RPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.320    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787537860


Query= TCONS_00031307

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  78.7    3e-17


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 78.7 bits (194),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 45/176 (26%), Positives = 65/176 (37%), Gaps = 30/176 (17%)

Query  200  LRHYFDNLYTQLPFFVETSFWTSVDAVYQSGGRFAKPFDHWILRLVLAI-----------  248
            L  +F N + Q P     SF      ++ S   +A P       L+LAI           
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPL------LLLAILALGALFSESP  54

Query  249  -----SSASTSYQPGDRDHQRALSLISGALKYAEEVLRPGSVVGIQGILLLAQYSFFDPN  303
                 SS +     G     RAL LI              S+  +Q +LLL  Y     +
Sbjct  55   TARSSSSLTDEAADGIHFFLRALILIHEDFSSPSS-----SLWILQALLLLELYELGTGD  109

Query  304  HFRSWYLVGTAVRAMVDLGLHQDPPLEELS---TPDRLDIRRIVYHCVYCLDRFVS  356
                W   G A+R    LGLH+DP     S     +  ++RR ++   + LDR +S
Sbjct  110  RKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLIS  165



Lambda      K        H        a         alpha
   0.320    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00035482

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00031308

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  86.4    2e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 86.4 bits (214),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 30/195 (15%)

Query  200  LRHYFDNLYTQLPFFVETSFWTSVDAVYQSGGRFAKPFDHWILRLVLAI-----------  248
            L  +F N + Q P     SF      ++ S   +A P       L+LAI           
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPL------LLLAILALGALFSESP  54

Query  249  -----SSASTSYQPGDRDHQRALSLISGALKYAEEVLRPGSVVGIQGILLLAQYSFFDPN  303
                 SS +     G     RAL LI              S+  +Q +LLL  Y     +
Sbjct  55   TARSSSSLTDEAADGIHFFLRALILIHEDFSSPSS-----SLWILQALLLLELYELGTGD  109

Query  304  HFRSWYLVGTAVRAMVDLGLHQDPPLEELS---TPDRLDIRRIVYHCVYCLDRGVSTALE  360
                W   G A+R    LGLH+DP     S     +  ++RR ++   + LDR +S  L 
Sbjct  110  RKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILG  169

Query  361  RTISFSDASVNVALP  375
            R    SD+ +++ LP
Sbjct  170  RPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.320    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 814084080


Query= TCONS_00031309

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  86.4    2e-19


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 86.4 bits (214),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 30/195 (15%)

Query  200  LRHYFDNLYTQLPFFVETSFWTSVDAVYQSGGRFAKPFDHWILRLVLAI-----------  248
            L  +F N + Q P     SF      ++ S   +A P       L+LAI           
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPL------LLLAILALGALFSESP  54

Query  249  -----SSASTSYQPGDRDHQRALSLISGALKYAEEVLRPGSVVGIQGILLLAQYSFFDPN  303
                 SS +     G     RAL LI              S+  +Q +LLL  Y     +
Sbjct  55   TARSSSSLTDEAADGIHFFLRALILIHEDFSSPSS-----SLWILQALLLLELYELGTGD  109

Query  304  HFRSWYLVGTAVRAMVDLGLHQDPPLEELS---TPDRLDIRRIVYHCVYCLDRGVSTALE  360
                W   G A+R    LGLH+DP     S     +  ++RR ++   + LDR +S  L 
Sbjct  110  RKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILG  169

Query  361  RTISFSDASVNVALP  375
            R    SD+ +++ LP
Sbjct  170  RPPLLSDSDIDLPLP  184



Lambda      K        H        a         alpha
   0.320    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 814084080


Query= TCONS_00035484

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00031312

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00035485

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466049 pfam19343, DUF5923, Family of unknown function (DUF592...  617     0.0  


>CDD:466049 pfam19343, DUF5923, Family of unknown function (DUF5923).  This 
entry represents a family of uncharacterized fungal proteins. 
These proteins often also contain a C-terminal pfam14613 
domain.
Length=630

 Score = 617 bits (1595),  Expect = 0.0, Method: Composition-based stats.
 Identities = 206/417 (49%), Positives = 283/417 (68%), Gaps = 25/417 (6%)

Query  1    MPSRTVNRPMDTKQKEKDINQKLQLFGIYQAFKNGKLPSNKQCDVALNSAITSKALSSPP  60
                +VNRP+D KQKE D+++KLQL+GI QAF+NGKLPSNKQ DVALN A+ S  L S  
Sbjct  1    PAKGSVNRPVDKKQKEADVDRKLQLYGIIQAFRNGKLPSNKQIDVALNYALASSPLDS--  58

Query  61   KELSSEGQALVKDLRVVIDEAKKLILSKNEGQLLQDFIWEAQKIGTGEAPVQPDVPVSKE  120
             +LS EG+ LV+DLR VI+ A+ L+L KN  +LLQ+FIW  + +   +A      PV KE
Sbjct  59   SKLSPEGRKLVQDLRDVIETARLLVLEKNADELLQNFIWHTRDVDPDDAKKPEVAPVDKE  118

Query  121  SAQQDADRAVEGLKTLGTLLITNGEFRKLLNDAMIIVRDMAGDVSQQAADRLRPSQEQLS  180
             A+QD  +A+E L+TLGTL+ITNGEFRKLL+DA +I RD+A D +Q+AA+++RPS+EQL+
Sbjct  119  KAKQDGQQALEHLRTLGTLIITNGEFRKLLSDASVIGRDLAADGAQKAAEKVRPSEEQLA  178

Query  181  QVDQPAEENVWHEKPNI-PKEQLKSRFQK-------SKEEAGDVANTATQSA--TGGQDP  230
            QVD+PA +N WHE P++    QLK   +           +  + A  A Q+A   G +DP
Sbjct  179  QVDEPAPDNTWHETPDLSIPGQLKQHPKDDGKGAPVKTGDGEEAAGEAAQAAQPAGSEDP  238

Query  231  A-------------TAKDVDVQAGVGSAAQKAKEKVPEDASQEAKSRAQELKERTRSYME  277
                           A DVD   G  +   K K ++ +   QE K RA+E  ERT++Y+ 
Sbjct  239  RAQAQAAAADQVGGDASDVDAAEGKKAGLDKLKGRLSDRVPQEHKDRAREHAERTKNYLS  298

Query  278  QKMPKERREQVIWRLKKMVIEIQGHPDYQQAVGTLLSLAEKYGRHTRDISKQGAGTTKEL  337
            +K P+ERR+Q I+RLKK+V+E QGHPDYQ+A+  LL LAE+Y  H + +++QGAG+ K  
Sbjct  299  EKFPEERRDQFIYRLKKVVVECQGHPDYQEAIEWLLDLAEEYAGHGKTVAQQGAGSAKGA  358

Query  338  RGNERIRSMEANLKTLIERFANSTSLDDFFDSLDKIYRDADRDPELRGWFKNMDTFI  394
            R +  ++  E  L+TL+ERFAN TSLDD FD+++++Y DADRDPELRGWFKN+DT+I
Sbjct  359  RSDPSLQQAETELRTLLERFANGTSLDDIFDAINQLYDDADRDPELRGWFKNVDTYI  415



Lambda      K        H        a         alpha
   0.311    0.128    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 497069440


Query= TCONS_00031313

Length=262


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 288845238


Query= TCONS_00031314

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00031315

Length=880
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466049 pfam19343, DUF5923, Family of unknown function (DUF592...  1045    0.0  
CDD:434071 pfam14613, DUF4449, Protein of unknown function (DUF44...  247     1e-77


>CDD:466049 pfam19343, DUF5923, Family of unknown function (DUF5923).  This 
entry represents a family of uncharacterized fungal proteins. 
These proteins often also contain a C-terminal pfam14613 
domain.
Length=630

 Score = 1045 bits (2704),  Expect = 0.0, Method: Composition-based stats.
 Identities = 334/632 (53%), Positives = 446/632 (71%), Gaps = 26/632 (4%)

Query  1    MPSRTVNRPMDTKQKEKDINQKLQLFGIYQAFKNGKLPSNKQCDVALNSAITSKALSSPP  60
                +VNRP+D KQKE D+++KLQL+GI QAF+NGKLPSNKQ DVALN A+ S  L S  
Sbjct  1    PAKGSVNRPVDKKQKEADVDRKLQLYGIIQAFRNGKLPSNKQIDVALNYALASSPLDS--  58

Query  61   KELSSEGQALVKDLRVVIDEAKKLILSKNEGQLLQDFIWEAQKIGTGEAPVQPDVPVSKE  120
             +LS EG+ LV+DLR VI+ A+ L+L KN  +LLQ+FIW  + +   +A      PV KE
Sbjct  59   SKLSPEGRKLVQDLRDVIETARLLVLEKNADELLQNFIWHTRDVDPDDAKKPEVAPVDKE  118

Query  121  SAQQDADRAVEGLKTLGTLLITNGEFRKLLNDAMIIVRDMAGDVSQQAADRLRPSQEQLS  180
             A+QD  +A+E L+TLGTL+ITNGEFRKLL+DA +I RD+A D +Q+AA+++RPS+EQL+
Sbjct  119  KAKQDGQQALEHLRTLGTLIITNGEFRKLLSDASVIGRDLAADGAQKAAEKVRPSEEQLA  178

Query  181  QVDQPAEENVWHEKPNI-PKEQLKSRFQK-------SKEEAGDVANTATQSA--TGGQDP  230
            QVD+PA +N WHE P++    QLK   +           +  + A  A Q+A   G +DP
Sbjct  179  QVDEPAPDNTWHETPDLSIPGQLKQHPKDDGKGAPVKTGDGEEAAGEAAQAAQPAGSEDP  238

Query  231  A-------------TAKDVDVQAGVGSAAQKAKEKVPEDASQEAKSRAQELKERTRSYME  277
                           A DVD   G  +   K K ++ +   QE K RA+E  ERT++Y+ 
Sbjct  239  RAQAQAAAADQVGGDASDVDAAEGKKAGLDKLKGRLSDRVPQEHKDRAREHAERTKNYLS  298

Query  278  QKMPKERREQVIWRLKKMVIEIQGHPDYQQAVGTLLSLAEKYGRHTRDISKQGAGTTKEL  337
            +K P+ERR+Q I+RLKK+V+E QGHPDYQ+A+  LL LAE+Y  H + +++QGAG+ K  
Sbjct  299  EKFPEERRDQFIYRLKKVVVECQGHPDYQEAIEWLLDLAEEYAGHGKTVAQQGAGSAKGA  358

Query  338  RGNERIRSMEANLKTLIERFANSTSLDDFFDSLDKIYRDADRDPELRGWFKNMDTFIRKA  397
            R +  ++  E  L+TL+ERFAN TSLDD FD+++++Y DADRDPELRGWFKN+DT+IRK 
Sbjct  359  RSDPSLQQAETELRTLLERFANGTSLDDIFDAINQLYDDADRDPELRGWFKNVDTYIRKC  418

Query  398  LQEQGYIMQEDCNREWDRLYDHGRYLLRDRYKDHTDRILDEIRFIGDQFNQDPQNRAFRS  457
            L E GYI++++CNREW+ LYD GRY LRD+YK HTDR+ DEI+F  DQF++DP N+ F  
Sbjct  419  LLEPGYILEDECNREWNELYDSGRYFLRDKYKGHTDRLFDEIKFWFDQFDEDPLNKRFGE  478

Query  458  ALEKLFNDLGRDASGNVDFKKHLLKDIRDVILPSVFENVRYVPVPRIEVSDPMADVVVEN  517
               +L  DLG D+ G + FK HL KDIRDVILP++FENV YVP+PRIE +DPM D+V+EN
Sbjct  479  DWARLTKDLGFDSEGKLTFKPHLWKDIRDVILPALFENVGYVPIPRIEYTDPMLDLVIEN  538

Query  518  LVIESDNLMPNVVEFGSDNYIRWGRKN-ISNKRDNKIMISVSGIQADLRDVSYYIKKKQG  576
            LV+E DNL PNVVEF +DNY R+ R   IS+K  +K  +++S IQADLRDV++Y KKKQG
Sbjct  539  LVLEGDNLFPNVVEFEADNYFRFSRYKIISDKNHHKFTLTLSQIQADLRDVAFYFKKKQG  598

Query  577  FPSITDKGVMDIFLGNEGFGFKIAASTAHKED  608
            FP +TD GV D+FLG EG  F +  S+A K+D
Sbjct  599  FPKLTDSGVADVFLGGEGLSFTVHLSSADKDD  630


>CDD:434071 pfam14613, DUF4449, Protein of unknown function (DUF4449).  This 
is a fungal DUF of unknown function.
Length=156

 Score = 247 bits (632),  Expect = 1e-77, Method: Composition-based stats.
 Identities = 99/156 (63%), Positives = 118/156 (76%), Gaps = 2/156 (1%)

Query  620  VKIHDLDIKLRKSKHKILFAIFKPMLFNIVRPTLEKVLEKQIHDAFVKGDAFAFEVNQEV  679
            V I +L IKL+KSKHK+LF +FKP+L  +VRP L+K LEKQI DAF K DAF +E+ QE 
Sbjct  1    VDIDNLKIKLKKSKHKLLFTLFKPLLLKVVRPALQKALEKQIRDAFEKLDAFLYEIKQEA  60

Query  680  QRAKEATKQDPANAPNIYSRYVDAARAKLTEKKQKAQA--VAQRDTKIQTVTTLHDSMFP  737
             RAKE  K DP NAPNIYSRY+DAA+ + T+KK+KA+    A  D K+    T  DS+FP
Sbjct  61   DRAKEEAKSDPENAPNIYSRYLDAAQKRFTKKKEKAEEGKAAAADKKVNIAMTKEDSIFP  120

Query  738  NIKFPGAVSNKATEYTELAQKGERWESPVFSIGSAS  773
            NIK PG +S KATEY ELA+KGERWESPVFSIGSAS
Sbjct  121  NIKLPGGISTKATEYKELARKGERWESPVFSIGSAS  156



Lambda      K        H        a         alpha
   0.314    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1126878490


Query= TCONS_00031316

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459917 pfam00731, AIRC, AIR carboxylase. Members of this fami...  144     6e-43
CDD:396689 pfam02222, ATP-grasp, ATP-grasp domain. This family do...  121     4e-34
CDD:436029 pfam17769, PurK_C, Phosphoribosylaminoimidazole carbox...  77.6    6e-19


>CDD:459917 pfam00731, AIRC, AIR carboxylase.  Members of this family catalyze 
the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate 
(AIR). This family catalyze the sixth 
step of de novo purine biosynthesis. Some members of this family 
contain two copies of this domain.
Length=147

 Score = 144 bits (365),  Expect = 6e-43, Method: Composition-based stats.
 Identities = 66/105 (63%), Positives = 78/105 (74%), Gaps = 1/105 (1%)

Query  212  VAVMMGSDSDLKTLVPGLKLLRDYFGIEPAVDITSAHRTPTFMAEYSASAAARGIKVIIA  271
            V ++MGSDSDL  +    K+L++ FGI   V + SAHRTP  + EY+  A  RG+KVIIA
Sbjct  1    VGIIMGSDSDLPVMKKAAKILKE-FGIPYEVRVVSAHRTPERLLEYAKEAEERGLKVIIA  59

Query  272  AAGGAAHLPGMAAAHTVLPVIGVPVKGSSLDGVDSLYSIVQMPRG  316
             AGGAAHLPGM AA T LPVIGVPVK S+LDG+DSL SIVQMP G
Sbjct  60   GAGGAAHLPGMVAALTTLPVIGVPVKSSALDGLDSLLSIVQMPSG  104


>CDD:396689 pfam02222, ATP-grasp, ATP-grasp domain.  This family does not 
contain all known ATP-grasp domain members. This family includes 
a diverse set of enzymes that possess ATP-dependent carboxylate-amine 
ligase activity.
Length=169

 Score = 121 bits (306),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 45/91 (49%), Positives = 63/91 (69%), Gaps = 2/91 (2%)

Query  1    MVVKTKD-AVLSYPTVETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGAF  59
            +VV++ D     YP VET+QED IC+L  APAR V  AI  +AQ++A++ V    G G F
Sbjct  80   LVVRSVDGETAFYPVVETIQEDGICRLSVAPAR-VPQAIQAEAQDIAKRLVDELGGVGVF  138

Query  60   GVEMFLLEDDSIMLCEIASRIHNSGHYTIEG  90
            GVE+F+ ED  +++ E+A R HNSGHYT++G
Sbjct  139  GVELFVTEDGDLLINELAPRPHNSGHYTLDG  169


>CDD:436029 pfam17769, PurK_C, Phosphoribosylaminoimidazole carboxylase C-terminal 
domain.  This entry represents the C-terminal domain 
of the PurK enzyme.
Length=56

 Score = 77.6 bits (192),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 24/59 (41%), Positives = 36/59 (61%), Gaps = 4/59 (7%)

Query  119  SIMLNIIGGAAPDTHLKAAEAALSIPNASIHLYSKGAAKPGRKMGHVTVAASTMHEAEK  177
            ++M+N++G    +   +  E  L+IP A +HLY K  A+PGRKMGHVTV    + E  +
Sbjct  1    AVMVNLLG----EELGEGLEELLAIPGAHLHLYGKEEARPGRKMGHVTVVGDDLEELLE  55



Lambda      K        H        a         alpha
   0.318    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00031317

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466049 pfam19343, DUF5923, Family of unknown function (DUF592...  442     3e-155


>CDD:466049 pfam19343, DUF5923, Family of unknown function (DUF5923).  This 
entry represents a family of uncharacterized fungal proteins. 
These proteins often also contain a C-terminal pfam14613 
domain.
Length=630

 Score = 442 bits (1140),  Expect = 3e-155, Method: Composition-based stats.
 Identities = 137/221 (62%), Positives = 174/221 (79%), Gaps = 1/221 (0%)

Query  1    MEANLKTLIERFANSTSLDDFFDSLDKIYRDADRDPELRGWFKNMDTFIRKALQEQGYIM  60
             E  L+TL+ERFAN TSLDD FD+++++Y DADRDPELRGWFKN+DT+IRK L E GYI+
Sbjct  367  AETELRTLLERFANGTSLDDIFDAINQLYDDADRDPELRGWFKNVDTYIRKCLLEPGYIL  426

Query  61   QEDCNREWDRLYDHGRYLLRDRYKDHTDRILDEIRFIGDQFNQDPQNRAFRSALEKLFND  120
            +++CNREW+ LYD GRY LRD+YK HTDR+ DEI+F  DQF++DP N+ F     +L  D
Sbjct  427  EDECNREWNELYDSGRYFLRDKYKGHTDRLFDEIKFWFDQFDEDPLNKRFGEDWARLTKD  486

Query  121  LGRDASGNVDFKKHLLKDIRDVILPSVFENVRYVPVPRIEVSDPMADVVVENLVIESDNL  180
            LG D+ G + FK HL KDIRDVILP++FENV YVP+PRIE +DPM D+V+ENLV+E DNL
Sbjct  487  LGFDSEGKLTFKPHLWKDIRDVILPALFENVGYVPIPRIEYTDPMLDLVIENLVLEGDNL  546

Query  181  MPNVVEFGSDNYIRWGRKN-ISNKRDNKIMISVSGIQADLR  220
             PNVVEF +DNY R+ R   IS+K  +K  +++S IQADLR
Sbjct  547  FPNVVEFEADNYFRFSRYKIISDKNHHKFTLTLSQIQADLR  587



Lambda      K        H        a         alpha
   0.322    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00035486

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466049 pfam19343, DUF5923, Family of unknown function (DUF592...  295     7e-99


>CDD:466049 pfam19343, DUF5923, Family of unknown function (DUF5923).  This 
entry represents a family of uncharacterized fungal proteins. 
These proteins often also contain a C-terminal pfam14613 
domain.
Length=630

 Score = 295 bits (758),  Expect = 7e-99, Method: Composition-based stats.
 Identities = 91/155 (59%), Positives = 116/155 (75%), Gaps = 1/155 (1%)

Query  1    MQEDCNREWDRLYDHGRYLLRDRYKDHTDRILDEIRFIGDQFNQDPQNRAFRSALEKLFN  60
            ++++CNREW+ LYD GRY LRD+YK HTDR+ DEI+F  DQF++DP N+ F     +L  
Sbjct  426  LEDECNREWNELYDSGRYFLRDKYKGHTDRLFDEIKFWFDQFDEDPLNKRFGEDWARLTK  485

Query  61   DLGRDASGNVDFKKHLLKDIRDVILPSVFENVRYVPVPRIEVSDPMADVVVENLVIESDN  120
            DLG D+ G + FK HL KDIRDVILP++FENV YVP+PRIE +DPM D+V+ENLV+E DN
Sbjct  486  DLGFDSEGKLTFKPHLWKDIRDVILPALFENVGYVPIPRIEYTDPMLDLVIENLVLEGDN  545

Query  121  LMPNVVEFGSDNYIRWGRKN-ISNKRDNKVRHALS  154
            L PNVVEF +DNY R+ R   IS+K  +K    LS
Sbjct  546  LFPNVVEFEADNYFRFSRYKIISDKNHHKFTLTLS  580



Lambda      K        H        a         alpha
   0.322    0.140    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00031318

Length=1187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      175     5e-51
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  95.3    8e-23
CDD:459804 pfam00403, HMA, Heavy-metal-associated domain              67.3    2e-14


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 175 bits (447),  Expect = 5e-51, Method: Composition-based stats.
 Identities = 68/182 (37%), Positives = 107/182 (59%), Gaps = 16/182 (9%)

Query  567  KVIPTELIEIGDIVVLHPGDKVSADGVVIRGESYVDESMITGEALPIYKKKGSTVIAGTV  626
            + +P + +  GDIV+L PG++V ADG ++ G + VDES++TGE+LP+ KKKG  V +GTV
Sbjct  16   EEVPADELVPGDIVLLKPGERVPADGRIVEGSASVDESLLTGESLPVEKKKGDMVYSGTV  75

Query  627  NGTSSIDFKVTRTGKDTQLSQIVKLVQDAQTSRASIQRVADIVAGYFVPAIISLGLITFF  686
              + S    VT TG+DT+L +I +LV++A++ +  +QR+ D +  YF P ++ + L  F 
Sbjct  76   VVSGSAKAVVTATGEDTELGRIARLVEEAKSKKTPLQRLLDRLGKYFSPVVLLIALAVFL  135

Query  687  GWMFISHVLSHPPQIFVAEGSGGKVMVCLKLCISVIVFACPCALGLSTPTAVMVGTGVGA  746
             W+F+           +A                V+V ACPCAL L+TP A+ VG    A
Sbjct  136  LWLFVGGPPLRALLRALA----------------VLVAACPCALPLATPLALAVGARRLA  179

Query  747  QQ  748
            ++
Sbjct  180  KK  181


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 95.3 bits (237),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 59/250 (24%), Positives = 90/250 (36%), Gaps = 69/250 (28%)

Query  764   INHVVFDKTGTLTTGKMTVAEARIERQWLEGRRRLWWLIVGLAEMNSEHPIGKAIVSAAK  823
             I  VVFD  GTLT G+  V EA                   +AE+ SEHP+ KAIV+AA+
Sbjct  1     IKAVVFDLDGTLTDGEPVVTEA-------------------IAELASEHPLAKAIVAAAE  41

Query  824   AESGHSESDGLPGSLGDFNAHVGKGISALIEPAFNGERTRYRAVIGNAAFLRSQGVSVPE  883
                       LP  + DF A +                      +G   +L         
Sbjct  42    ---------DLPIPVEDFTARLL---------------------LGKRDWLEELD-----  66

Query  884   SVEAEDQLTGSPKPTAGITQIHVAIDHQFAGTIFLRDTVKSTAVATIAALHRMGLKTSLI  943
                   +         G+T + V +    A  +     +   A   + AL   G+K +++
Sbjct  67    ----ILRGLVETLEAEGLTVVLVELLGVIA--LADELKLYPGAAEALKALKERGIKVAIL  120

Query  944   TGDTRSTALSIASVVGIPSEF---------VHASASPSDKQSIIASMQESGDRVAMVGDG  994
             TGD    A ++  ++G+   F               P    + +  +    + V MVGDG
Sbjct  121   TGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMVGDG  180

Query  995   INDSPALATA  1004
             +ND PA   A
Sbjct  181   VNDIPAAKAA  190


>CDD:459804 pfam00403, HMA, Heavy-metal-associated domain.  
Length=58

 Score = 67.3 bits (165),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 23/58 (40%), Positives = 26/58 (45%), Gaps = 0/58 (0%)

Query  27  TVKVDGMTCGACTSAVEGAFKGLEGVGEVSVSLMMGRAVVHHDPTIISAETIAEKIED  84
           T +V GM CG C + VE A   L GV  VSV L      V  D      E + E IE 
Sbjct  1   TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58


 Score = 64.6 bits (158),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 23/58 (40%), Positives = 31/58 (53%), Gaps = 0/58 (0%)

Query  118  TLAVEGMTCGACTSAVEGGLKEVRGVKSINVSLLSERAVVEHDASVITPEQLADIIED  175
            T  V GM CG C + VE  L E+ GV S++V L ++   V  DA     E+L + IE 
Sbjct  1    TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58



Lambda      K        H        a         alpha
   0.318    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1521899420


Query= TCONS_00035487

Length=605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466049 pfam19343, DUF5923, Family of unknown function (DUF592...  656     0.0  
CDD:434071 pfam14613, DUF4449, Protein of unknown function (DUF44...  251     1e-81


>CDD:466049 pfam19343, DUF5923, Family of unknown function (DUF5923).  This 
entry represents a family of uncharacterized fungal proteins. 
These proteins often also contain a C-terminal pfam14613 
domain.
Length=630

 Score = 656 bits (1696),  Expect = 0.0, Method: Composition-based stats.
 Identities = 196/332 (59%), Positives = 257/332 (77%), Gaps = 1/332 (0%)

Query  3    QKMPKERREQVIWRLKKMVIEIQGHPDYQQAVGTLLSLAEKYGRHTRDISKQGAGTTKEL  62
            +K P+ERR+Q I+RLKK+V+E QGHPDYQ+A+  LL LAE+Y  H + +++QGAG+ K  
Sbjct  299  EKFPEERRDQFIYRLKKVVVECQGHPDYQEAIEWLLDLAEEYAGHGKTVAQQGAGSAKGA  358

Query  63   RGNERIRSMEANLKTLIERFANSTSLDDFFDSLDKIYRDADRDPELRGWFKNMDTFIRKA  122
            R +  ++  E  L+TL+ERFAN TSLDD FD+++++Y DADRDPELRGWFKN+DT+IRK 
Sbjct  359  RSDPSLQQAETELRTLLERFANGTSLDDIFDAINQLYDDADRDPELRGWFKNVDTYIRKC  418

Query  123  LQEQGYIMQEDCNREWDRLYDHGRYLLRDRYKDHTDRILDEIRFIGDQFNQDPQNRAFRS  182
            L E GYI++++CNREW+ LYD GRY LRD+YK HTDR+ DEI+F  DQF++DP N+ F  
Sbjct  419  LLEPGYILEDECNREWNELYDSGRYFLRDKYKGHTDRLFDEIKFWFDQFDEDPLNKRFGE  478

Query  183  ALEKLFNDLGRDASGNVDFKKHLLKDIRDVILPSVFENVRYVPVPRIEVSDPMADVVVEN  242
               +L  DLG D+ G + FK HL KDIRDVILP++FENV YVP+PRIE +DPM D+V+EN
Sbjct  479  DWARLTKDLGFDSEGKLTFKPHLWKDIRDVILPALFENVGYVPIPRIEYTDPMLDLVIEN  538

Query  243  LVIESDNLMPNVVEFGSDNYIRWGRKN-ISNKRDNKIMISVSGIQADLRDVSYYIKKKQG  301
            LV+E DNL PNVVEF +DNY R+ R   IS+K  +K  +++S IQADLRDV++Y KKKQG
Sbjct  539  LVLEGDNLFPNVVEFEADNYFRFSRYKIISDKNHHKFTLTLSQIQADLRDVAFYFKKKQG  598

Query  302  FPSITDKGVMDIFLGNEGFGFKIAASTAHKED  333
            FP +TD GV D+FLG EG  F +  S+A K+D
Sbjct  599  FPKLTDSGVADVFLGGEGLSFTVHLSSADKDD  630


>CDD:434071 pfam14613, DUF4449, Protein of unknown function (DUF4449).  This 
is a fungal DUF of unknown function.
Length=156

 Score = 251 bits (643),  Expect = 1e-81, Method: Composition-based stats.
 Identities = 99/156 (63%), Positives = 118/156 (76%), Gaps = 2/156 (1%)

Query  345  VKIHDLDIKLRKSKHKILFAIFKPMLFNIVRPTLEKVLEKQIHDAFVKGDAFAFEVNQEV  404
            V I +L IKL+KSKHK+LF +FKP+L  +VRP L+K LEKQI DAF K DAF +E+ QE 
Sbjct  1    VDIDNLKIKLKKSKHKLLFTLFKPLLLKVVRPALQKALEKQIRDAFEKLDAFLYEIKQEA  60

Query  405  QRAKEATKQDPANAPNIYSRYVDAARAKLTEKKQKAQA--VAQRDTKIQTVTTLHDSMFP  462
             RAKE  K DP NAPNIYSRY+DAA+ + T+KK+KA+    A  D K+    T  DS+FP
Sbjct  61   DRAKEEAKSDPENAPNIYSRYLDAAQKRFTKKKEKAEEGKAAAADKKVNIAMTKEDSIFP  120

Query  463  NIKFPGAVSNKATEYTELAQKGERWESPVFSIGSAS  498
            NIK PG +S KATEY ELA+KGERWESPVFSIGSAS
Sbjct  121  NIKLPGGISTKATEYKELARKGERWESPVFSIGSAS  156



Lambda      K        H        a         alpha
   0.317    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 766641564


Query= TCONS_00035488

Length=1187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      175     5e-51
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  95.3    8e-23
CDD:459804 pfam00403, HMA, Heavy-metal-associated domain              67.3    2e-14


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 175 bits (447),  Expect = 5e-51, Method: Composition-based stats.
 Identities = 68/182 (37%), Positives = 107/182 (59%), Gaps = 16/182 (9%)

Query  567  KVIPTELIEIGDIVVLHPGDKVSADGVVIRGESYVDESMITGEALPIYKKKGSTVIAGTV  626
            + +P + +  GDIV+L PG++V ADG ++ G + VDES++TGE+LP+ KKKG  V +GTV
Sbjct  16   EEVPADELVPGDIVLLKPGERVPADGRIVEGSASVDESLLTGESLPVEKKKGDMVYSGTV  75

Query  627  NGTSSIDFKVTRTGKDTQLSQIVKLVQDAQTSRASIQRVADIVAGYFVPAIISLGLITFF  686
              + S    VT TG+DT+L +I +LV++A++ +  +QR+ D +  YF P ++ + L  F 
Sbjct  76   VVSGSAKAVVTATGEDTELGRIARLVEEAKSKKTPLQRLLDRLGKYFSPVVLLIALAVFL  135

Query  687  GWMFISHVLSHPPQIFVAEGSGGKVMVCLKLCISVIVFACPCALGLSTPTAVMVGTGVGA  746
             W+F+           +A                V+V ACPCAL L+TP A+ VG    A
Sbjct  136  LWLFVGGPPLRALLRALA----------------VLVAACPCALPLATPLALAVGARRLA  179

Query  747  QQ  748
            ++
Sbjct  180  KK  181


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 95.3 bits (237),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 59/250 (24%), Positives = 90/250 (36%), Gaps = 69/250 (28%)

Query  764   INHVVFDKTGTLTTGKMTVAEARIERQWLEGRRRLWWLIVGLAEMNSEHPIGKAIVSAAK  823
             I  VVFD  GTLT G+  V EA                   +AE+ SEHP+ KAIV+AA+
Sbjct  1     IKAVVFDLDGTLTDGEPVVTEA-------------------IAELASEHPLAKAIVAAAE  41

Query  824   AESGHSESDGLPGSLGDFNAHVGKGISALIEPAFNGERTRYRAVIGNAAFLRSQGVSVPE  883
                       LP  + DF A +                      +G   +L         
Sbjct  42    ---------DLPIPVEDFTARLL---------------------LGKRDWLEELD-----  66

Query  884   SVEAEDQLTGSPKPTAGITQIHVAIDHQFAGTIFLRDTVKSTAVATIAALHRMGLKTSLI  943
                   +         G+T + V +    A  +     +   A   + AL   G+K +++
Sbjct  67    ----ILRGLVETLEAEGLTVVLVELLGVIA--LADELKLYPGAAEALKALKERGIKVAIL  120

Query  944   TGDTRSTALSIASVVGIPSEF---------VHASASPSDKQSIIASMQESGDRVAMVGDG  994
             TGD    A ++  ++G+   F               P    + +  +    + V MVGDG
Sbjct  121   TGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMVGDG  180

Query  995   INDSPALATA  1004
             +ND PA   A
Sbjct  181   VNDIPAAKAA  190


>CDD:459804 pfam00403, HMA, Heavy-metal-associated domain.  
Length=58

 Score = 67.3 bits (165),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 23/58 (40%), Positives = 26/58 (45%), Gaps = 0/58 (0%)

Query  27  TVKVDGMTCGACTSAVEGAFKGLEGVGEVSVSLMMGRAVVHHDPTIISAETIAEKIED  84
           T +V GM CG C + VE A   L GV  VSV L      V  D      E + E IE 
Sbjct  1   TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58


 Score = 64.6 bits (158),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 23/58 (40%), Positives = 31/58 (53%), Gaps = 0/58 (0%)

Query  118  TLAVEGMTCGACTSAVEGGLKEVRGVKSINVSLLSERAVVEHDASVITPEQLADIIED  175
            T  V GM CG C + VE  L E+ GV S++V L ++   V  DA     E+L + IE 
Sbjct  1    TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58



Lambda      K        H        a         alpha
   0.318    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1521899420


Query= TCONS_00031319

Length=912
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466049 pfam19343, DUF5923, Family of unknown function (DUF592...  994     0.0  
CDD:434071 pfam14613, DUF4449, Protein of unknown function (DUF44...  248     7e-78


>CDD:466049 pfam19343, DUF5923, Family of unknown function (DUF5923).  This 
entry represents a family of uncharacterized fungal proteins. 
These proteins often also contain a C-terminal pfam14613 
domain.
Length=630

 Score = 994 bits (2572),  Expect = 0.0, Method: Composition-based stats.
 Identities = 327/664 (49%), Positives = 436/664 (66%), Gaps = 58/664 (9%)

Query  1    MPSRTVNRPMDTKQKEKGSDSDFAPGHQPEVAVVRDISSNCFKLTDHAAFKNGKLPSVSP  60
                +VNRP+D KQKE                   D+           AF+NGKLPS   
Sbjct  1    PAKGSVNRPVDKKQKEA------------------DVDRKLQLYGIIQAFRNGKLPS---  39

Query  61   RIIIANALSRRNKQCDVALNSAITSKALSSPPKELSSEGQALVKDLRVVIDEAKKLILSK  120
                       NKQ DVALN A+ S  L S   +LS EG+ LV+DLR VI+ A+ L+L K
Sbjct  40   -----------NKQIDVALNYALASSPLDS--SKLSPEGRKLVQDLRDVIETARLLVLEK  86

Query  121  NEGQLLQDFIWEAQKIGTGEAPVQPDVPVSKESAQQDADRAVEGLKTLGTLLITNGEFRK  180
            N  +LLQ+FIW  + +   +A      PV KE A+QD  +A+E L+TLGTL+ITNGEFRK
Sbjct  87   NADELLQNFIWHTRDVDPDDAKKPEVAPVDKEKAKQDGQQALEHLRTLGTLIITNGEFRK  146

Query  181  LLNDAMIIVRDMAGDVSQQAADRLRPSQEQLSQVDQPAEENVWHEKPNI-PKEQLKSRFQ  239
            LL+DA +I RD+A D +Q+AA+++RPS+EQL+QVD+PA +N WHE P++    QLK   +
Sbjct  147  LLSDASVIGRDLAADGAQKAAEKVRPSEEQLAQVDEPAPDNTWHETPDLSIPGQLKQHPK  206

Query  240  K-------SKEEAGDVANTATQSA--TGGQDPA-------------TAKDVDVQAGVGSA  277
                       +  + A  A Q+A   G +DP               A DVD   G  + 
Sbjct  207  DDGKGAPVKTGDGEEAAGEAAQAAQPAGSEDPRAQAQAAAADQVGGDASDVDAAEGKKAG  266

Query  278  AQKAKEKVPEDASQEAKSRAQELKERTRSYMEQKMPKERREQVIWRLKKMVIEIQGHPDY  337
              K K ++ +   QE K RA+E  ERT++Y+ +K P+ERR+Q I+RLKK+V+E QGHPDY
Sbjct  267  LDKLKGRLSDRVPQEHKDRAREHAERTKNYLSEKFPEERRDQFIYRLKKVVVECQGHPDY  326

Query  338  QQAVGTLLSLAEKYGRHTRDISKQGAGTTKELRGNERIRSMEANLKTLIERFANSTSLDD  397
            Q+A+  LL LAE+Y  H + +++QGAG+ K  R +  ++  E  L+TL+ERFAN TSLDD
Sbjct  327  QEAIEWLLDLAEEYAGHGKTVAQQGAGSAKGARSDPSLQQAETELRTLLERFANGTSLDD  386

Query  398  FFDSLDKIYRDADRDPELRGWFKNMDTFIRKALQEQGYIMQEDCNREWDRLYDHGRYLLR  457
             FD+++++Y DADRDPELRGWFKN+DT+IRK L E GYI++++CNREW+ LYD GRY LR
Sbjct  387  IFDAINQLYDDADRDPELRGWFKNVDTYIRKCLLEPGYILEDECNREWNELYDSGRYFLR  446

Query  458  DRYKDHTDRILDEIRFIGDQFNQDPQNRAFRSALEKLFNDLGRDASGNVDFKKHLLKDIR  517
            D+YK HTDR+ DEI+F  DQF++DP N+ F     +L  DLG D+ G + FK HL KDIR
Sbjct  447  DKYKGHTDRLFDEIKFWFDQFDEDPLNKRFGEDWARLTKDLGFDSEGKLTFKPHLWKDIR  506

Query  518  DVILPSVFENVRYVPVPRIEVSDPMADVVVENLVIESDNLMPNVVEFGSDNYIRWGRKN-  576
            DVILP++FENV YVP+PRIE +DPM D+V+ENLV+E DNL PNVVEF +DNY R+ R   
Sbjct  507  DVILPALFENVGYVPIPRIEYTDPMLDLVIENLVLEGDNLFPNVVEFEADNYFRFSRYKI  566

Query  577  ISNKRDNKIMISVSGIQADLRDVSYYIKKKQGFPSITDKGVMDIFLGNEGFGFKIAASTA  636
            IS+K  +K  +++S IQADLRDV++Y KKKQGFP +TD GV D+FLG EG  F +  S+A
Sbjct  567  ISDKNHHKFTLTLSQIQADLRDVAFYFKKKQGFPKLTDSGVADVFLGGEGLSFTVHLSSA  626

Query  637  HKED  640
             K+D
Sbjct  627  DKDD  630


>CDD:434071 pfam14613, DUF4449, Protein of unknown function (DUF4449).  This 
is a fungal DUF of unknown function.
Length=156

 Score = 248 bits (635),  Expect = 7e-78, Method: Composition-based stats.
 Identities = 99/156 (63%), Positives = 118/156 (76%), Gaps = 2/156 (1%)

Query  652  VKIHDLDIKLRKSKHKILFAIFKPMLFNIVRPTLEKVLEKQIHDAFVKGDAFAFEVNQEV  711
            V I +L IKL+KSKHK+LF +FKP+L  +VRP L+K LEKQI DAF K DAF +E+ QE 
Sbjct  1    VDIDNLKIKLKKSKHKLLFTLFKPLLLKVVRPALQKALEKQIRDAFEKLDAFLYEIKQEA  60

Query  712  QRAKEATKQDPANAPNIYSRYVDAARAKLTEKKQKAQA--VAQRDTKIQTVTTLHDSMFP  769
             RAKE  K DP NAPNIYSRY+DAA+ + T+KK+KA+    A  D K+    T  DS+FP
Sbjct  61   DRAKEEAKSDPENAPNIYSRYLDAAQKRFTKKKEKAEEGKAAAADKKVNIAMTKEDSIFP  120

Query  770  NIKFPGAVSNKATEYTELAQKGERWESPVFSIGSAS  805
            NIK PG +S KATEY ELA+KGERWESPVFSIGSAS
Sbjct  121  NIKLPGGISTKATEYKELARKGERWESPVFSIGSAS  156



Lambda      K        H        a         alpha
   0.314    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0772    0.140     1.90     42.6     43.6 

Effective search space used: 1172814938


Query= TCONS_00031320

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466049 pfam19343, DUF5923, Family of unknown function (DUF592...  527     0.0  
CDD:434071 pfam14613, DUF4449, Protein of unknown function (DUF44...  252     8e-83


>CDD:466049 pfam19343, DUF5923, Family of unknown function (DUF5923).  This 
entry represents a family of uncharacterized fungal proteins. 
These proteins often also contain a C-terminal pfam14613 
domain.
Length=630

 Score = 527 bits (1359),  Expect = 0.0, Method: Composition-based stats.
 Identities = 160/264 (61%), Positives = 204/264 (77%), Gaps = 1/264 (0%)

Query  1    MEANLKVGIERFANSTSLDDFFDSLDKIYRDADRDPELRGWFKNMDTFIRKALQEQGYIM  60
             E  L+  +ERFAN TSLDD FD+++++Y DADRDPELRGWFKN+DT+IRK L E GYI+
Sbjct  367  AETELRTLLERFANGTSLDDIFDAINQLYDDADRDPELRGWFKNVDTYIRKCLLEPGYIL  426

Query  61   QEDCNREWDRLYDHGRYLLRDRYKDHTDRILDEIRFIGDQFNQDPQNRAFRSALEKLFND  120
            +++CNREW+ LYD GRY LRD+YK HTDR+ DEI+F  DQF++DP N+ F     +L  D
Sbjct  427  EDECNREWNELYDSGRYFLRDKYKGHTDRLFDEIKFWFDQFDEDPLNKRFGEDWARLTKD  486

Query  121  LGRDASGNVDFKKHLLKDIRDVILPSVFENVRYVPVPRIEVSDPMADVVVENLVIESDNL  180
            LG D+ G + FK HL KDIRDVILP++FENV YVP+PRIE +DPM D+V+ENLV+E DNL
Sbjct  487  LGFDSEGKLTFKPHLWKDIRDVILPALFENVGYVPIPRIEYTDPMLDLVIENLVLEGDNL  546

Query  181  MPNVVEFGSDNYIRWGRKN-ISNKRDNKIMISVSGIQADLRDVSYYIKKKQGFPSITDKG  239
             PNVVEF +DNY R+ R   IS+K  +K  +++S IQADLRDV++Y KKKQGFP +TD G
Sbjct  547  FPNVVEFEADNYFRFSRYKIISDKNHHKFTLTLSQIQADLRDVAFYFKKKQGFPKLTDSG  606

Query  240  VMDIFLGNEGFGFKIAASTAHKED  263
            V D+FLG EG  F +  S+A K+D
Sbjct  607  VADVFLGGEGLSFTVHLSSADKDD  630


>CDD:434071 pfam14613, DUF4449, Protein of unknown function (DUF4449).  This 
is a fungal DUF of unknown function.
Length=156

 Score = 252 bits (646),  Expect = 8e-83, Method: Composition-based stats.
 Identities = 99/156 (63%), Positives = 118/156 (76%), Gaps = 2/156 (1%)

Query  275  VKIHDLDIKLRKSKHKILFAIFKPMLFNIVRPTLEKVLEKQIHDAFVKGDAFAFEVNQEV  334
            V I +L IKL+KSKHK+LF +FKP+L  +VRP L+K LEKQI DAF K DAF +E+ QE 
Sbjct  1    VDIDNLKIKLKKSKHKLLFTLFKPLLLKVVRPALQKALEKQIRDAFEKLDAFLYEIKQEA  60

Query  335  QRAKEATKQDPANAPNIYSRYVDAARAKLTEKKQKAQA--VAQRDTKIQTVTTLHDSMFP  392
             RAKE  K DP NAPNIYSRY+DAA+ + T+KK+KA+    A  D K+    T  DS+FP
Sbjct  61   DRAKEEAKSDPENAPNIYSRYLDAAQKRFTKKKEKAEEGKAAAADKKVNIAMTKEDSIFP  120

Query  393  NIKFPGAVSNKATEYTELAQKGERWESPVFSIGSAS  428
            NIK PG +S KATEY ELA+KGERWESPVFSIGSAS
Sbjct  121  NIKLPGGISTKATEYKELARKGERWESPVFSIGSAS  156



Lambda      K        H        a         alpha
   0.317    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00031321

Length=1187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      175     5e-51
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  95.3    8e-23
CDD:459804 pfam00403, HMA, Heavy-metal-associated domain              67.3    2e-14


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 175 bits (447),  Expect = 5e-51, Method: Composition-based stats.
 Identities = 68/182 (37%), Positives = 107/182 (59%), Gaps = 16/182 (9%)

Query  567  KVIPTELIEIGDIVVLHPGDKVSADGVVIRGESYVDESMITGEALPIYKKKGSTVIAGTV  626
            + +P + +  GDIV+L PG++V ADG ++ G + VDES++TGE+LP+ KKKG  V +GTV
Sbjct  16   EEVPADELVPGDIVLLKPGERVPADGRIVEGSASVDESLLTGESLPVEKKKGDMVYSGTV  75

Query  627  NGTSSIDFKVTRTGKDTQLSQIVKLVQDAQTSRASIQRVADIVAGYFVPAIISLGLITFF  686
              + S    VT TG+DT+L +I +LV++A++ +  +QR+ D +  YF P ++ + L  F 
Sbjct  76   VVSGSAKAVVTATGEDTELGRIARLVEEAKSKKTPLQRLLDRLGKYFSPVVLLIALAVFL  135

Query  687  GWMFISHVLSHPPQIFVAEGSGGKVMVCLKLCISVIVFACPCALGLSTPTAVMVGTGVGA  746
             W+F+           +A                V+V ACPCAL L+TP A+ VG    A
Sbjct  136  LWLFVGGPPLRALLRALA----------------VLVAACPCALPLATPLALAVGARRLA  179

Query  747  QQ  748
            ++
Sbjct  180  KK  181


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 95.3 bits (237),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 59/250 (24%), Positives = 90/250 (36%), Gaps = 69/250 (28%)

Query  764   INHVVFDKTGTLTTGKMTVAEARIERQWLEGRRRLWWLIVGLAEMNSEHPIGKAIVSAAK  823
             I  VVFD  GTLT G+  V EA                   +AE+ SEHP+ KAIV+AA+
Sbjct  1     IKAVVFDLDGTLTDGEPVVTEA-------------------IAELASEHPLAKAIVAAAE  41

Query  824   AESGHSESDGLPGSLGDFNAHVGKGISALIEPAFNGERTRYRAVIGNAAFLRSQGVSVPE  883
                       LP  + DF A +                      +G   +L         
Sbjct  42    ---------DLPIPVEDFTARLL---------------------LGKRDWLEELD-----  66

Query  884   SVEAEDQLTGSPKPTAGITQIHVAIDHQFAGTIFLRDTVKSTAVATIAALHRMGLKTSLI  943
                   +         G+T + V +    A  +     +   A   + AL   G+K +++
Sbjct  67    ----ILRGLVETLEAEGLTVVLVELLGVIA--LADELKLYPGAAEALKALKERGIKVAIL  120

Query  944   TGDTRSTALSIASVVGIPSEF---------VHASASPSDKQSIIASMQESGDRVAMVGDG  994
             TGD    A ++  ++G+   F               P    + +  +    + V MVGDG
Sbjct  121   TGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMVGDG  180

Query  995   INDSPALATA  1004
             +ND PA   A
Sbjct  181   VNDIPAAKAA  190


>CDD:459804 pfam00403, HMA, Heavy-metal-associated domain.  
Length=58

 Score = 67.3 bits (165),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 23/58 (40%), Positives = 26/58 (45%), Gaps = 0/58 (0%)

Query  27  TVKVDGMTCGACTSAVEGAFKGLEGVGEVSVSLMMGRAVVHHDPTIISAETIAEKIED  84
           T +V GM CG C + VE A   L GV  VSV L      V  D      E + E IE 
Sbjct  1   TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58


 Score = 64.6 bits (158),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 23/58 (40%), Positives = 31/58 (53%), Gaps = 0/58 (0%)

Query  118  TLAVEGMTCGACTSAVEGGLKEVRGVKSINVSLLSERAVVEHDASVITPEQLADIIED  175
            T  V GM CG C + VE  L E+ GV S++V L ++   V  DA     E+L + IE 
Sbjct  1    TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58



Lambda      K        H        a         alpha
   0.318    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1521899420


Query= TCONS_00035489

Length=1187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      175     5e-51
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  95.3    8e-23
CDD:459804 pfam00403, HMA, Heavy-metal-associated domain              67.3    2e-14


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 175 bits (447),  Expect = 5e-51, Method: Composition-based stats.
 Identities = 68/182 (37%), Positives = 107/182 (59%), Gaps = 16/182 (9%)

Query  567  KVIPTELIEIGDIVVLHPGDKVSADGVVIRGESYVDESMITGEALPIYKKKGSTVIAGTV  626
            + +P + +  GDIV+L PG++V ADG ++ G + VDES++TGE+LP+ KKKG  V +GTV
Sbjct  16   EEVPADELVPGDIVLLKPGERVPADGRIVEGSASVDESLLTGESLPVEKKKGDMVYSGTV  75

Query  627  NGTSSIDFKVTRTGKDTQLSQIVKLVQDAQTSRASIQRVADIVAGYFVPAIISLGLITFF  686
              + S    VT TG+DT+L +I +LV++A++ +  +QR+ D +  YF P ++ + L  F 
Sbjct  76   VVSGSAKAVVTATGEDTELGRIARLVEEAKSKKTPLQRLLDRLGKYFSPVVLLIALAVFL  135

Query  687  GWMFISHVLSHPPQIFVAEGSGGKVMVCLKLCISVIVFACPCALGLSTPTAVMVGTGVGA  746
             W+F+           +A                V+V ACPCAL L+TP A+ VG    A
Sbjct  136  LWLFVGGPPLRALLRALA----------------VLVAACPCALPLATPLALAVGARRLA  179

Query  747  QQ  748
            ++
Sbjct  180  KK  181


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 95.3 bits (237),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 59/250 (24%), Positives = 90/250 (36%), Gaps = 69/250 (28%)

Query  764   INHVVFDKTGTLTTGKMTVAEARIERQWLEGRRRLWWLIVGLAEMNSEHPIGKAIVSAAK  823
             I  VVFD  GTLT G+  V EA                   +AE+ SEHP+ KAIV+AA+
Sbjct  1     IKAVVFDLDGTLTDGEPVVTEA-------------------IAELASEHPLAKAIVAAAE  41

Query  824   AESGHSESDGLPGSLGDFNAHVGKGISALIEPAFNGERTRYRAVIGNAAFLRSQGVSVPE  883
                       LP  + DF A +                      +G   +L         
Sbjct  42    ---------DLPIPVEDFTARLL---------------------LGKRDWLEELD-----  66

Query  884   SVEAEDQLTGSPKPTAGITQIHVAIDHQFAGTIFLRDTVKSTAVATIAALHRMGLKTSLI  943
                   +         G+T + V +    A  +     +   A   + AL   G+K +++
Sbjct  67    ----ILRGLVETLEAEGLTVVLVELLGVIA--LADELKLYPGAAEALKALKERGIKVAIL  120

Query  944   TGDTRSTALSIASVVGIPSEF---------VHASASPSDKQSIIASMQESGDRVAMVGDG  994
             TGD    A ++  ++G+   F               P    + +  +    + V MVGDG
Sbjct  121   TGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMVGDG  180

Query  995   INDSPALATA  1004
             +ND PA   A
Sbjct  181   VNDIPAAKAA  190


>CDD:459804 pfam00403, HMA, Heavy-metal-associated domain.  
Length=58

 Score = 67.3 bits (165),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 23/58 (40%), Positives = 26/58 (45%), Gaps = 0/58 (0%)

Query  27  TVKVDGMTCGACTSAVEGAFKGLEGVGEVSVSLMMGRAVVHHDPTIISAETIAEKIED  84
           T +V GM CG C + VE A   L GV  VSV L      V  D      E + E IE 
Sbjct  1   TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58


 Score = 64.6 bits (158),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 23/58 (40%), Positives = 31/58 (53%), Gaps = 0/58 (0%)

Query  118  TLAVEGMTCGACTSAVEGGLKEVRGVKSINVSLLSERAVVEHDASVITPEQLADIIED  175
            T  V GM CG C + VE  L E+ GV S++V L ++   V  DA     E+L + IE 
Sbjct  1    TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58



Lambda      K        H        a         alpha
   0.318    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1521899420


Query= TCONS_00035490

Length=1187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      175     5e-51
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  95.3    8e-23
CDD:459804 pfam00403, HMA, Heavy-metal-associated domain              67.3    2e-14


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 175 bits (447),  Expect = 5e-51, Method: Composition-based stats.
 Identities = 68/182 (37%), Positives = 107/182 (59%), Gaps = 16/182 (9%)

Query  567  KVIPTELIEIGDIVVLHPGDKVSADGVVIRGESYVDESMITGEALPIYKKKGSTVIAGTV  626
            + +P + +  GDIV+L PG++V ADG ++ G + VDES++TGE+LP+ KKKG  V +GTV
Sbjct  16   EEVPADELVPGDIVLLKPGERVPADGRIVEGSASVDESLLTGESLPVEKKKGDMVYSGTV  75

Query  627  NGTSSIDFKVTRTGKDTQLSQIVKLVQDAQTSRASIQRVADIVAGYFVPAIISLGLITFF  686
              + S    VT TG+DT+L +I +LV++A++ +  +QR+ D +  YF P ++ + L  F 
Sbjct  76   VVSGSAKAVVTATGEDTELGRIARLVEEAKSKKTPLQRLLDRLGKYFSPVVLLIALAVFL  135

Query  687  GWMFISHVLSHPPQIFVAEGSGGKVMVCLKLCISVIVFACPCALGLSTPTAVMVGTGVGA  746
             W+F+           +A                V+V ACPCAL L+TP A+ VG    A
Sbjct  136  LWLFVGGPPLRALLRALA----------------VLVAACPCALPLATPLALAVGARRLA  179

Query  747  QQ  748
            ++
Sbjct  180  KK  181


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 95.3 bits (237),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 59/250 (24%), Positives = 90/250 (36%), Gaps = 69/250 (28%)

Query  764   INHVVFDKTGTLTTGKMTVAEARIERQWLEGRRRLWWLIVGLAEMNSEHPIGKAIVSAAK  823
             I  VVFD  GTLT G+  V EA                   +AE+ SEHP+ KAIV+AA+
Sbjct  1     IKAVVFDLDGTLTDGEPVVTEA-------------------IAELASEHPLAKAIVAAAE  41

Query  824   AESGHSESDGLPGSLGDFNAHVGKGISALIEPAFNGERTRYRAVIGNAAFLRSQGVSVPE  883
                       LP  + DF A +                      +G   +L         
Sbjct  42    ---------DLPIPVEDFTARLL---------------------LGKRDWLEELD-----  66

Query  884   SVEAEDQLTGSPKPTAGITQIHVAIDHQFAGTIFLRDTVKSTAVATIAALHRMGLKTSLI  943
                   +         G+T + V +    A  +     +   A   + AL   G+K +++
Sbjct  67    ----ILRGLVETLEAEGLTVVLVELLGVIA--LADELKLYPGAAEALKALKERGIKVAIL  120

Query  944   TGDTRSTALSIASVVGIPSEF---------VHASASPSDKQSIIASMQESGDRVAMVGDG  994
             TGD    A ++  ++G+   F               P    + +  +    + V MVGDG
Sbjct  121   TGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMVGDG  180

Query  995   INDSPALATA  1004
             +ND PA   A
Sbjct  181   VNDIPAAKAA  190


>CDD:459804 pfam00403, HMA, Heavy-metal-associated domain.  
Length=58

 Score = 67.3 bits (165),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 23/58 (40%), Positives = 26/58 (45%), Gaps = 0/58 (0%)

Query  27  TVKVDGMTCGACTSAVEGAFKGLEGVGEVSVSLMMGRAVVHHDPTIISAETIAEKIED  84
           T +V GM CG C + VE A   L GV  VSV L      V  D      E + E IE 
Sbjct  1   TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58


 Score = 64.6 bits (158),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 23/58 (40%), Positives = 31/58 (53%), Gaps = 0/58 (0%)

Query  118  TLAVEGMTCGACTSAVEGGLKEVRGVKSINVSLLSERAVVEHDASVITPEQLADIIED  175
            T  V GM CG C + VE  L E+ GV S++V L ++   V  DA     E+L + IE 
Sbjct  1    TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58



Lambda      K        H        a         alpha
   0.318    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1521899420


Query= TCONS_00035491

Length=1187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      175     5e-51
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  95.3    8e-23
CDD:459804 pfam00403, HMA, Heavy-metal-associated domain              67.3    2e-14


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 175 bits (447),  Expect = 5e-51, Method: Composition-based stats.
 Identities = 68/182 (37%), Positives = 107/182 (59%), Gaps = 16/182 (9%)

Query  567  KVIPTELIEIGDIVVLHPGDKVSADGVVIRGESYVDESMITGEALPIYKKKGSTVIAGTV  626
            + +P + +  GDIV+L PG++V ADG ++ G + VDES++TGE+LP+ KKKG  V +GTV
Sbjct  16   EEVPADELVPGDIVLLKPGERVPADGRIVEGSASVDESLLTGESLPVEKKKGDMVYSGTV  75

Query  627  NGTSSIDFKVTRTGKDTQLSQIVKLVQDAQTSRASIQRVADIVAGYFVPAIISLGLITFF  686
              + S    VT TG+DT+L +I +LV++A++ +  +QR+ D +  YF P ++ + L  F 
Sbjct  76   VVSGSAKAVVTATGEDTELGRIARLVEEAKSKKTPLQRLLDRLGKYFSPVVLLIALAVFL  135

Query  687  GWMFISHVLSHPPQIFVAEGSGGKVMVCLKLCISVIVFACPCALGLSTPTAVMVGTGVGA  746
             W+F+           +A                V+V ACPCAL L+TP A+ VG    A
Sbjct  136  LWLFVGGPPLRALLRALA----------------VLVAACPCALPLATPLALAVGARRLA  179

Query  747  QQ  748
            ++
Sbjct  180  KK  181


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 95.3 bits (237),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 59/250 (24%), Positives = 90/250 (36%), Gaps = 69/250 (28%)

Query  764   INHVVFDKTGTLTTGKMTVAEARIERQWLEGRRRLWWLIVGLAEMNSEHPIGKAIVSAAK  823
             I  VVFD  GTLT G+  V EA                   +AE+ SEHP+ KAIV+AA+
Sbjct  1     IKAVVFDLDGTLTDGEPVVTEA-------------------IAELASEHPLAKAIVAAAE  41

Query  824   AESGHSESDGLPGSLGDFNAHVGKGISALIEPAFNGERTRYRAVIGNAAFLRSQGVSVPE  883
                       LP  + DF A +                      +G   +L         
Sbjct  42    ---------DLPIPVEDFTARLL---------------------LGKRDWLEELD-----  66

Query  884   SVEAEDQLTGSPKPTAGITQIHVAIDHQFAGTIFLRDTVKSTAVATIAALHRMGLKTSLI  943
                   +         G+T + V +    A  +     +   A   + AL   G+K +++
Sbjct  67    ----ILRGLVETLEAEGLTVVLVELLGVIA--LADELKLYPGAAEALKALKERGIKVAIL  120

Query  944   TGDTRSTALSIASVVGIPSEF---------VHASASPSDKQSIIASMQESGDRVAMVGDG  994
             TGD    A ++  ++G+   F               P    + +  +    + V MVGDG
Sbjct  121   TGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMVGDG  180

Query  995   INDSPALATA  1004
             +ND PA   A
Sbjct  181   VNDIPAAKAA  190


>CDD:459804 pfam00403, HMA, Heavy-metal-associated domain.  
Length=58

 Score = 67.3 bits (165),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 23/58 (40%), Positives = 26/58 (45%), Gaps = 0/58 (0%)

Query  27  TVKVDGMTCGACTSAVEGAFKGLEGVGEVSVSLMMGRAVVHHDPTIISAETIAEKIED  84
           T +V GM CG C + VE A   L GV  VSV L      V  D      E + E IE 
Sbjct  1   TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58


 Score = 64.6 bits (158),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 23/58 (40%), Positives = 31/58 (53%), Gaps = 0/58 (0%)

Query  118  TLAVEGMTCGACTSAVEGGLKEVRGVKSINVSLLSERAVVEHDASVITPEQLADIIED  175
            T  V GM CG C + VE  L E+ GV S++V L ++   V  DA     E+L + IE 
Sbjct  1    TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58



Lambda      K        H        a         alpha
   0.318    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1521899420


Query= TCONS_00031322

Length=1187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      175     5e-51
CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydro...  95.3    8e-23
CDD:459804 pfam00403, HMA, Heavy-metal-associated domain              67.3    2e-14


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 175 bits (447),  Expect = 5e-51, Method: Composition-based stats.
 Identities = 68/182 (37%), Positives = 107/182 (59%), Gaps = 16/182 (9%)

Query  567  KVIPTELIEIGDIVVLHPGDKVSADGVVIRGESYVDESMITGEALPIYKKKGSTVIAGTV  626
            + +P + +  GDIV+L PG++V ADG ++ G + VDES++TGE+LP+ KKKG  V +GTV
Sbjct  16   EEVPADELVPGDIVLLKPGERVPADGRIVEGSASVDESLLTGESLPVEKKKGDMVYSGTV  75

Query  627  NGTSSIDFKVTRTGKDTQLSQIVKLVQDAQTSRASIQRVADIVAGYFVPAIISLGLITFF  686
              + S    VT TG+DT+L +I +LV++A++ +  +QR+ D +  YF P ++ + L  F 
Sbjct  76   VVSGSAKAVVTATGEDTELGRIARLVEEAKSKKTPLQRLLDRLGKYFSPVVLLIALAVFL  135

Query  687  GWMFISHVLSHPPQIFVAEGSGGKVMVCLKLCISVIVFACPCALGLSTPTAVMVGTGVGA  746
             W+F+           +A                V+V ACPCAL L+TP A+ VG    A
Sbjct  136  LWLFVGGPPLRALLRALA----------------VLVAACPCALPLATPLALAVGARRLA  179

Query  747  QQ  748
            ++
Sbjct  180  KK  181


>CDD:459910 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase.  
This family is structurally different from the alpha/beta hydrolase 
family (pfam00561). This family includes L-2-haloacid 
dehalogenase, epoxide hydrolases and phosphatases. The structure 
of the family consists of two domains. One is an inserted 
four helix bundle, which is the least well conserved region 
of the alignment, between residues 16 and 96 of Pseudomonas 
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold 
is composed of the core alpha/beta domain. Those members with 
the characteristic DxD triad at the N-terminus are probably 
phosphatidylglycerolphosphate (PGP) phosphatases involved 
in cardiolipin biosynthesis in the mitochondria.
Length=191

 Score = 95.3 bits (237),  Expect = 8e-23, Method: Composition-based stats.
 Identities = 59/250 (24%), Positives = 90/250 (36%), Gaps = 69/250 (28%)

Query  764   INHVVFDKTGTLTTGKMTVAEARIERQWLEGRRRLWWLIVGLAEMNSEHPIGKAIVSAAK  823
             I  VVFD  GTLT G+  V EA                   +AE+ SEHP+ KAIV+AA+
Sbjct  1     IKAVVFDLDGTLTDGEPVVTEA-------------------IAELASEHPLAKAIVAAAE  41

Query  824   AESGHSESDGLPGSLGDFNAHVGKGISALIEPAFNGERTRYRAVIGNAAFLRSQGVSVPE  883
                       LP  + DF A +                      +G   +L         
Sbjct  42    ---------DLPIPVEDFTARLL---------------------LGKRDWLEELD-----  66

Query  884   SVEAEDQLTGSPKPTAGITQIHVAIDHQFAGTIFLRDTVKSTAVATIAALHRMGLKTSLI  943
                   +         G+T + V +    A  +     +   A   + AL   G+K +++
Sbjct  67    ----ILRGLVETLEAEGLTVVLVELLGVIA--LADELKLYPGAAEALKALKERGIKVAIL  120

Query  944   TGDTRSTALSIASVVGIPSEF---------VHASASPSDKQSIIASMQESGDRVAMVGDG  994
             TGD    A ++  ++G+   F               P    + +  +    + V MVGDG
Sbjct  121   TGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIYLAALERLGVKPEEVLMVGDG  180

Query  995   INDSPALATA  1004
             +ND PA   A
Sbjct  181   VNDIPAAKAA  190


>CDD:459804 pfam00403, HMA, Heavy-metal-associated domain.  
Length=58

 Score = 67.3 bits (165),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 23/58 (40%), Positives = 26/58 (45%), Gaps = 0/58 (0%)

Query  27  TVKVDGMTCGACTSAVEGAFKGLEGVGEVSVSLMMGRAVVHHDPTIISAETIAEKIED  84
           T +V GM CG C + VE A   L GV  VSV L      V  D      E + E IE 
Sbjct  1   TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58


 Score = 64.6 bits (158),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 23/58 (40%), Positives = 31/58 (53%), Gaps = 0/58 (0%)

Query  118  TLAVEGMTCGACTSAVEGGLKEVRGVKSINVSLLSERAVVEHDASVITPEQLADIIED  175
            T  V GM CG C + VE  L E+ GV S++V L ++   V  DA     E+L + IE 
Sbjct  1    TFRVSGMHCGGCAAKVEKALSELPGVLSVSVDLATKTVTVTGDAESTKLEKLVEAIEK  58



Lambda      K        H        a         alpha
   0.318    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1521899420


Query= TCONS_00031323

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425683 pfam00439, Bromodomain, Bromodomain. Bromodomains are ...  88.5    2e-23


>CDD:425683 pfam00439, Bromodomain, Bromodomain.  Bromodomains are 110 amino 
acid long domains, that are found in many chromatin associated 
proteins. Bromodomains can interact specifically with 
acetylated lysine.
Length=84

 Score = 88.5 bits (220),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 52/84 (62%), Gaps = 0/84 (0%)

Query  128  LLHLLNDMQNHSAAWPFTQPVNRDEVPDYYEVIKEPMDLSTMEEKHEKDMYPTPQDFIKD  187
             L +L+ +  H  A PF +PV+ DE PDYY VIK+PMDLST+++K E   Y +  +F+ D
Sbjct  1    CLEILDKLMEHPIAAPFLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFLAD  60

Query  188  AMLIFDNCRKYNNENTPYAKSANK  211
              LIF N R YN   +   K+A K
Sbjct  61   VKLIFSNARTYNGPGSVIYKAAEK  84



Lambda      K        H        a         alpha
   0.318    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00035492

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425683 pfam00439, Bromodomain, Bromodomain. Bromodomains are ...  88.5    2e-23


>CDD:425683 pfam00439, Bromodomain, Bromodomain.  Bromodomains are 110 amino 
acid long domains, that are found in many chromatin associated 
proteins. Bromodomains can interact specifically with 
acetylated lysine.
Length=84

 Score = 88.5 bits (220),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 52/84 (62%), Gaps = 0/84 (0%)

Query  128  LLHLLNDMQNHSAAWPFTQPVNRDEVPDYYEVIKEPMDLSTMEEKHEKDMYPTPQDFIKD  187
             L +L+ +  H  A PF +PV+ DE PDYY VIK+PMDLST+++K E   Y +  +F+ D
Sbjct  1    CLEILDKLMEHPIAAPFLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFLAD  60

Query  188  AMLIFDNCRKYNNENTPYAKSANK  211
              LIF N R YN   +   K+A K
Sbjct  61   VKLIFSNARTYNGPGSVIYKAAEK  84



Lambda      K        H        a         alpha
   0.318    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00035493

Length=233
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425683 pfam00439, Bromodomain, Bromodomain. Bromodomains are ...  88.5    2e-23


>CDD:425683 pfam00439, Bromodomain, Bromodomain.  Bromodomains are 110 amino 
acid long domains, that are found in many chromatin associated 
proteins. Bromodomains can interact specifically with 
acetylated lysine.
Length=84

 Score = 88.5 bits (220),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 52/84 (62%), Gaps = 0/84 (0%)

Query  128  LLHLLNDMQNHSAAWPFTQPVNRDEVPDYYEVIKEPMDLSTMEEKHEKDMYPTPQDFIKD  187
             L +L+ +  H  A PF +PV+ DE PDYY VIK+PMDLST+++K E   Y +  +F+ D
Sbjct  1    CLEILDKLMEHPIAAPFLEPVDPDEYPDYYSVIKKPMDLSTIKKKLENGEYKSLAEFLAD  60

Query  188  AMLIFDNCRKYNNENTPYAKSANK  211
              LIF N R YN   +   K+A K
Sbjct  61   VKLIFSNARTYNGPGSVIYKAAEK  84



Lambda      K        H        a         alpha
   0.318    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00031324

Length=1223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464943 pfam15921, CCDC158, Coiled-coil domain-containing prot...  69.8    2e-12


>CDD:464943 pfam15921, CCDC158, Coiled-coil domain-containing protein 158. 
 CCDC158 is a family of proteins found in eukaryotes. The 
function is not known.
Length=1112

 Score = 69.8 bits (170),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 161/812 (20%), Positives = 337/812 (42%), Gaps = 124/812 (15%)

Query  263   KANFERQVERRQRMTREIAR----SHNIRGFDNIQDQSDIDDFMRKIRKLLKEQNQALER  318
             K + ER +E      +++ R    S+ +        +  + D   K++++  E++   + 
Sbjct  73    KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADI  132

Query  319   VKREAQTE--LR-EVQSTLNEIGQRKSALQESKNAAKRQIGANDKEASNYQAKLNEIDVD  375
              +RE+Q++  LR ++Q+T++E+   K   ++    +  QI    K   +++  L EI   
Sbjct  133   RRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEI---  189

Query  376   EGVQAAVEANIEDISSRLNHAKDRARSASLDKEIQDMNSELHALEDEGARLNAELIEATK  435
                  ++  + E+ S +  +  D   +         ++  L  L+ E + L   +     
Sbjct  190   ----RSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRI-----  240

Query  436   RAGDFARLDHLKKELKERERSLETMKAAHGERLAKYIGANWNPATLEQEFQRVLEEETRN  495
                 F   D L+    E +  +E +   H +R+ + I         E E +  +   T  
Sbjct  241   ----FPVEDQLEALKSESQNKIELLLQQHQDRIEQLIS--------EHEVE--ITGLTEK  286

Query  496   VSNAESQRDGVNRELEQVEFNLKTSKKTLAQRQKELNSCATEIREAINEEPEEYPDALKQ  555
              S+A SQ + +  +LE ++   +       ++  +L S  +++R  + E    Y D +++
Sbjct  287   ASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEE  346

Query  556   RQAQLDVARRDAEQSAGLGDYFMRCLETAKQVKACRLCQRAFRADAEFTVFQKRLEGLVK  615
              + QL +A  +  ++    D F                Q +   D +    QK L  L K
Sbjct  347   LEKQLVLANSELTEARTERDQF---------------SQESGNLDDQ---LQKLLADLHK  388

Query  616   K-AQIGVEEEDVERFEAELDAARAVSTAYDTWTRLSKTEIPDLEKEEDQYALQRDELLNQ  674
             +  ++ +E+E  +R     D     S   D   R       ++++ E      + E   Q
Sbjct  389   REKELSLEKEQNKRL---WDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQ  445

Query  675   LENHDKIVSEKIEKKRDVEALSKTVNTIVRYESEIKTIRSQIQDLSSNQQD-NTATRTLE  733
             +E     +  K       E+L K  +   + ES  + +R  +++L++ +    ++ RT+ 
Sbjct  446   MERQMAAIQGK------NESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVS  499

Query  734   DIQEEIAGIGDKTRALKKTLSKLINDRE------QARTEMNNLELQLRDARSKLDNVKFQ  787
             D+    A + +K RA++ T +++   R       Q    + N    LR+ +++ + +K Q
Sbjct  500   DLT---ASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQ  556

Query  788   LERKSDLL----ARIEEYKNLNNQQ-REA----ITKA-------DRDIEELTPELLKYQ-  830
             +  K  ++     +IE    L  Q  R A    + KA       DR +E    ++LK + 
Sbjct  557   MAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKK  616

Query  831   -AQYDDISQRVEAREREMQQGISQLSERIRQL-DLATEEIDSYNERGGPSQLERSRRELQ  888
              A+  ++  RV   E E  + ++  SER+R + D+  E     NE      ++ SR EL 
Sbjct  617   DAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNE------VKTSRNELN  670

Query  889   TIEAEISQLEAEQANITKEI----NKISAQLKDSENTKRQYSDNL---------------  929
             ++  +   L+    N ++E+    NK+  QLK +++   Q  + L               
Sbjct  671   SLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAM  730

Query  930   -TYRQATRALAEVSA---EIENL--AAQNAEVDRSRFKEESERRTREYNALAAKQASKMG  983
                +Q T    ++ A   +I+ L  A  NA  ++   KEE  + ++E + +A ++    G
Sbjct  731   GMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAG  790

Query  984   E---MKSKDDQLMQLLADWNTDYKDAASKYKE  1012
             E   ++S++ +L + +A+       A+ ++ E
Sbjct  791   ELEVLRSQERRLKEKVANMEVALDKASLQFAE  822



Lambda      K        H        a         alpha
   0.312    0.127    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1572163988


Query= TCONS_00031325

Length=1223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464943 pfam15921, CCDC158, Coiled-coil domain-containing prot...  69.8    2e-12


>CDD:464943 pfam15921, CCDC158, Coiled-coil domain-containing protein 158. 
 CCDC158 is a family of proteins found in eukaryotes. The 
function is not known.
Length=1112

 Score = 69.8 bits (170),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 161/812 (20%), Positives = 337/812 (42%), Gaps = 124/812 (15%)

Query  263   KANFERQVERRQRMTREIAR----SHNIRGFDNIQDQSDIDDFMRKIRKLLKEQNQALER  318
             K + ER +E      +++ R    S+ +        +  + D   K++++  E++   + 
Sbjct  73    KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADI  132

Query  319   VKREAQTE--LR-EVQSTLNEIGQRKSALQESKNAAKRQIGANDKEASNYQAKLNEIDVD  375
              +RE+Q++  LR ++Q+T++E+   K   ++    +  QI    K   +++  L EI   
Sbjct  133   RRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEI---  189

Query  376   EGVQAAVEANIEDISSRLNHAKDRARSASLDKEIQDMNSELHALEDEGARLNAELIEATK  435
                  ++  + E+ S +  +  D   +         ++  L  L+ E + L   +     
Sbjct  190   ----RSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRI-----  240

Query  436   RAGDFARLDHLKKELKERERSLETMKAAHGERLAKYIGANWNPATLEQEFQRVLEEETRN  495
                 F   D L+    E +  +E +   H +R+ + I         E E +  +   T  
Sbjct  241   ----FPVEDQLEALKSESQNKIELLLQQHQDRIEQLIS--------EHEVE--ITGLTEK  286

Query  496   VSNAESQRDGVNRELEQVEFNLKTSKKTLAQRQKELNSCATEIREAINEEPEEYPDALKQ  555
              S+A SQ + +  +LE ++   +       ++  +L S  +++R  + E    Y D +++
Sbjct  287   ASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEE  346

Query  556   RQAQLDVARRDAEQSAGLGDYFMRCLETAKQVKACRLCQRAFRADAEFTVFQKRLEGLVK  615
              + QL +A  +  ++    D F                Q +   D +    QK L  L K
Sbjct  347   LEKQLVLANSELTEARTERDQF---------------SQESGNLDDQ---LQKLLADLHK  388

Query  616   K-AQIGVEEEDVERFEAELDAARAVSTAYDTWTRLSKTEIPDLEKEEDQYALQRDELLNQ  674
             +  ++ +E+E  +R     D     S   D   R       ++++ E      + E   Q
Sbjct  389   REKELSLEKEQNKRL---WDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQ  445

Query  675   LENHDKIVSEKIEKKRDVEALSKTVNTIVRYESEIKTIRSQIQDLSSNQQD-NTATRTLE  733
             +E     +  K       E+L K  +   + ES  + +R  +++L++ +    ++ RT+ 
Sbjct  446   MERQMAAIQGK------NESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVS  499

Query  734   DIQEEIAGIGDKTRALKKTLSKLINDRE------QARTEMNNLELQLRDARSKLDNVKFQ  787
             D+    A + +K RA++ T +++   R       Q    + N    LR+ +++ + +K Q
Sbjct  500   DLT---ASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQ  556

Query  788   LERKSDLL----ARIEEYKNLNNQQ-REA----ITKA-------DRDIEELTPELLKYQ-  830
             +  K  ++     +IE    L  Q  R A    + KA       DR +E    ++LK + 
Sbjct  557   MAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKK  616

Query  831   -AQYDDISQRVEAREREMQQGISQLSERIRQL-DLATEEIDSYNERGGPSQLERSRRELQ  888
              A+  ++  RV   E E  + ++  SER+R + D+  E     NE      ++ SR EL 
Sbjct  617   DAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNE------VKTSRNELN  670

Query  889   TIEAEISQLEAEQANITKEI----NKISAQLKDSENTKRQYSDNL---------------  929
             ++  +   L+    N ++E+    NK+  QLK +++   Q  + L               
Sbjct  671   SLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAM  730

Query  930   -TYRQATRALAEVSA---EIENL--AAQNAEVDRSRFKEESERRTREYNALAAKQASKMG  983
                +Q T    ++ A   +I+ L  A  NA  ++   KEE  + ++E + +A ++    G
Sbjct  731   GMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAG  790

Query  984   E---MKSKDDQLMQLLADWNTDYKDAASKYKE  1012
             E   ++S++ +L + +A+       A+ ++ E
Sbjct  791   ELEVLRSQERRLKEKVANMEVALDKASLQFAE  822



Lambda      K        H        a         alpha
   0.312    0.127    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1572163988


Query= TCONS_00031326

Length=1223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464943 pfam15921, CCDC158, Coiled-coil domain-containing prot...  69.8    2e-12


>CDD:464943 pfam15921, CCDC158, Coiled-coil domain-containing protein 158. 
 CCDC158 is a family of proteins found in eukaryotes. The 
function is not known.
Length=1112

 Score = 69.8 bits (170),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 161/812 (20%), Positives = 337/812 (42%), Gaps = 124/812 (15%)

Query  263   KANFERQVERRQRMTREIAR----SHNIRGFDNIQDQSDIDDFMRKIRKLLKEQNQALER  318
             K + ER +E      +++ R    S+ +        +  + D   K++++  E++   + 
Sbjct  73    KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADI  132

Query  319   VKREAQTE--LR-EVQSTLNEIGQRKSALQESKNAAKRQIGANDKEASNYQAKLNEIDVD  375
              +RE+Q++  LR ++Q+T++E+   K   ++    +  QI    K   +++  L EI   
Sbjct  133   RRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEI---  189

Query  376   EGVQAAVEANIEDISSRLNHAKDRARSASLDKEIQDMNSELHALEDEGARLNAELIEATK  435
                  ++  + E+ S +  +  D   +         ++  L  L+ E + L   +     
Sbjct  190   ----RSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRI-----  240

Query  436   RAGDFARLDHLKKELKERERSLETMKAAHGERLAKYIGANWNPATLEQEFQRVLEEETRN  495
                 F   D L+    E +  +E +   H +R+ + I         E E +  +   T  
Sbjct  241   ----FPVEDQLEALKSESQNKIELLLQQHQDRIEQLIS--------EHEVE--ITGLTEK  286

Query  496   VSNAESQRDGVNRELEQVEFNLKTSKKTLAQRQKELNSCATEIREAINEEPEEYPDALKQ  555
              S+A SQ + +  +LE ++   +       ++  +L S  +++R  + E    Y D +++
Sbjct  287   ASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEE  346

Query  556   RQAQLDVARRDAEQSAGLGDYFMRCLETAKQVKACRLCQRAFRADAEFTVFQKRLEGLVK  615
              + QL +A  +  ++    D F                Q +   D +    QK L  L K
Sbjct  347   LEKQLVLANSELTEARTERDQF---------------SQESGNLDDQ---LQKLLADLHK  388

Query  616   K-AQIGVEEEDVERFEAELDAARAVSTAYDTWTRLSKTEIPDLEKEEDQYALQRDELLNQ  674
             +  ++ +E+E  +R     D     S   D   R       ++++ E      + E   Q
Sbjct  389   REKELSLEKEQNKRL---WDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQ  445

Query  675   LENHDKIVSEKIEKKRDVEALSKTVNTIVRYESEIKTIRSQIQDLSSNQQD-NTATRTLE  733
             +E     +  K       E+L K  +   + ES  + +R  +++L++ +    ++ RT+ 
Sbjct  446   MERQMAAIQGK------NESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVS  499

Query  734   DIQEEIAGIGDKTRALKKTLSKLINDRE------QARTEMNNLELQLRDARSKLDNVKFQ  787
             D+    A + +K RA++ T +++   R       Q    + N    LR+ +++ + +K Q
Sbjct  500   DLT---ASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQ  556

Query  788   LERKSDLL----ARIEEYKNLNNQQ-REA----ITKA-------DRDIEELTPELLKYQ-  830
             +  K  ++     +IE    L  Q  R A    + KA       DR +E    ++LK + 
Sbjct  557   MAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKK  616

Query  831   -AQYDDISQRVEAREREMQQGISQLSERIRQL-DLATEEIDSYNERGGPSQLERSRRELQ  888
              A+  ++  RV   E E  + ++  SER+R + D+  E     NE      ++ SR EL 
Sbjct  617   DAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNE------VKTSRNELN  670

Query  889   TIEAEISQLEAEQANITKEI----NKISAQLKDSENTKRQYSDNL---------------  929
             ++  +   L+    N ++E+    NK+  QLK +++   Q  + L               
Sbjct  671   SLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAM  730

Query  930   -TYRQATRALAEVSA---EIENL--AAQNAEVDRSRFKEESERRTREYNALAAKQASKMG  983
                +Q T    ++ A   +I+ L  A  NA  ++   KEE  + ++E + +A ++    G
Sbjct  731   GMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAG  790

Query  984   E---MKSKDDQLMQLLADWNTDYKDAASKYKE  1012
             E   ++S++ +L + +A+       A+ ++ E
Sbjct  791   ELEVLRSQERRLKEKVANMEVALDKASLQFAE  822



Lambda      K        H        a         alpha
   0.312    0.127    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0725    0.140     1.90     42.6     43.6 

Effective search space used: 1572163988


Query= TCONS_00031327

Length=491
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396631 pfam02144, Rad1, Repair protein Rad1/Rec1/Rad17            330     4e-112
CDD:461602 pfam05251, Ost5, Oligosaccharyltransferase subunit 5. ...  80.3    2e-19 


>CDD:396631 pfam02144, Rad1, Repair protein Rad1/Rec1/Rad17.  
Length=257

 Score = 330 bits (847),  Expect = 4e-112, Method: Composition-based stats.
 Identities = 138/329 (42%), Positives = 178/329 (54%), Gaps = 73/329 (22%)

Query  118  FSAVSSNAHQLYTLLQCIGFVPKATVQITPDGIRFSAEETRVIQGLAFLDKALFTSYTFN  177
            FSA +SN   LYTLL+CIGFV KA VQI+ DG++F+ E+ RVIQ  AFLDKALF+SY FN
Sbjct  1    FSATTSNVRHLYTLLKCIGFVDKALVQISSDGLKFTVEDNRVIQAQAFLDKALFSSYNFN  60

Query  178  PPKTPNNEANDADNHDNTTDTAYYPCFVVSLSALLETLKIFGINEAPSGSFSRAASVQPP  237
            PP   +++           D    P F ++LSALL+ L IFG N+  S            
Sbjct  61   PPTAQDDD----------DDEEDSPSFCLNLSALLDCLNIFGGNDDSSVK----------  100

Query  238  NPAASSAFTSPALLLARSCTIQYTHEGAPLSITLSETGVKTTCDLTTYEPEDTDTDIPFQ  297
                             SC + Y  EG+PL + L E GV TTC+L+TYEPED D D+   
Sbjct  101  ----------------TSCRMSYKGEGSPLVLILEEDGVTTTCELSTYEPED-DLDLDLD  143

Query  298  RDGIVMKIIMRSAWLHNAITELGATNPTVLKLSASATREPFFALSGSGGPLSESTVEFSI  357
            RD +V K+I++S WLHNA+ EL  T    L +SAS T  P FALS   G L  S VEF  
Sbjct  144  RDEVVFKVILKSDWLHNALRELDET-SEELYISASPTDAPHFALSSF-GELGSSKVEFPN  201

Query  358  ERQNQNNGPSQTHKVLTDDGSRARAKRAKLAPTVTETFLVSPPSSMGTRINQN-YRFSMI  416
            E                               +V ETF       +G  I  + Y+FS++
Sbjct  202  ES------------------------------SVLETFECYD---LGDEIVISRYKFSLL  228

Query  417  QKAARAMAVANKVSIRGDRQGVLSLQFMI  445
            +KA +A+A+A+KVSIR D +G+LSLQFMI
Sbjct  229  KKARKALALASKVSIRMDVRGLLSLQFMI  257


>CDD:461602 pfam05251, Ost5, Oligosaccharyltransferase subunit 5.  Eukaryotic 
N-glycosylation is catalyzed in the ER lumen, where the 
enzyme oligosaccharyltransferase (OTase) transfers donor glycans 
from a dolichol pyrophosphate (DolP) carrier (Lipid-linked 
oligosaccharide; LLO) to polypeptides. The yeast OTase 
is a hetero-oligomeric complex composed of essential (Ost1, 
Ost2, Wbp1, Stt3, and Swp1) and nonessential (Ost3, Ost4, Ost5, 
and Ost6) subunits. This domain family is found in Ost5. 
The precise function of this subunit is not known, however 
Ost5 appears to form a sub-complex with Ost1, and this sub-complex 
associates with the catalytic Stt3 subunit of OTase. 
Down regulation of Ost5 resulted in a limited effect on glycosylation 
and no effect on the stability of Ost1 or Stt3 subunits.
Length=73

 Score = 80.3 bits (199),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 25/72 (35%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query  13  SPYSPLISKDHQFFVGFSLLLSALVFTGLFGLN--------RSFLSIATFGVPASLAFGF  64
            P+SP +    Q  + F LLL  L+ T  F +         RS +      + ASL  GF
Sbjct  1   PPFSPPVPPSLQPTLAFVLLLIGLLLTAYFFIYEVTSTKPKRSLVKELLLALVASLFLGF  60

Query  65  GAVYMICAVGVY  76
           G V++  AVGVY
Sbjct  61  GVVFLFLAVGVY  72



Lambda      K        H        a         alpha
   0.318    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 605626400


Query= TCONS_00031329

Length=407


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00031328

Length=407


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00035494

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00031330

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00031331

Length=391
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425605 pfam00320, GATA, GATA zinc finger. This domain uses fo...  57.7    6e-12


>CDD:425605 pfam00320, GATA, GATA zinc finger.  This domain uses four cysteine 
residues to coordinate a zinc ion. This domain binds to 
DNA. Two GATA zinc fingers are found in the GATA transcription 
factors. However there are several proteins which only 
contain a single copy of the domain.
Length=36

 Score = 57.7 bits (140),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 17/27 (63%), Positives = 24/27 (89%), Gaps = 0/27 (0%)

Query  343  CTDCGTSDSPEWRKGPDGPKTLCNACG  369
            C++CGT+ +P WR+GP+G +TLCNACG
Sbjct  1    CSNCGTTKTPLWRRGPNGNRTLCNACG  27



Lambda      K        H        a         alpha
   0.314    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00031332

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00031333

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00035495

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00035496

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00031334

Length=413


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00035497

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00031336

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.144    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00031335

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00035499

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.144    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00031337

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily. This...  62.0    7e-14


>CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=121

 Score = 62.0 bits (151),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 19/91 (21%), Positives = 34/91 (37%), Gaps = 6/91 (7%)

Query  2    DLVSPKGVGVILRSLKIDYKFPMTYPDKVTVYHKLVHDPSAQQSQYAFDLQAIILSEARQ  61
                  G+G+IL    + Y+  +   D++TV  +L+           F L+   LS    
Sbjct  37   AYREALGIGLILAEAHVRYRRELKLGDELTVETRLID-----WDAKRFHLEHRFLSP-DG  90

Query  62   RPAARVHEDIVVYDYKQNKKTTLPPFVEAQF  92
            +  A     +V  DY+  K   +P  +    
Sbjct  91   KLVATAETRLVFVDYETRKPAPIPEELLEAL  121



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00031343

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily. This...  89.7    6e-23


>CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=121

 Score = 89.7 bits (223),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 56/137 (41%), Gaps = 16/137 (12%)

Query  114  VAWGEMDSMVRHVNNVTYIRYAETARVYFIRNIAVHIDPAHRKEWMDLVSPKGVGVILRS  173
            V  G++D+   H+NN  Y+RY E AR  F+  + +          +      G+G+IL  
Sbjct  1    VRPGDIDAN-GHMNNARYLRYFEEARDRFLERLGL---------DLAYREALGIGLILAE  50

Query  174  LKIDYKFPMTYPDKVTVYHKLVHDPSAQQSQYAFDLQAIILSEARQRPAARVHEDIVVYD  233
              + Y+  +   D++TV  +L+           F L+   LS    +  A     +V  D
Sbjct  51   AHVRYRRELKLGDELTVETRLID-----WDAKRFHLEHRFLSP-DGKLVATAETRLVFVD  104

Query  234  YKQNKKTTLPPFVEAQF  250
            Y+  K   +P  +    
Sbjct  105  YETRKPAPIPEELLEAL  121



Lambda      K        H        a         alpha
   0.321    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00031340

Length=173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily. This...  70.4    1e-16


>CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=121

 Score = 70.4 bits (173),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (38%), Gaps = 15/122 (12%)

Query  5    VTYIRYAETARVYFIRNIAVHIDPAHRKEWMDLVSPKGVGVILRSLKIDYKFPMTYPDKV  64
              Y+RY E AR  F+  + +          +      G+G+IL    + Y+  +   D++
Sbjct  15   ARYLRYFEEARDRFLERLGL---------DLAYREALGIGLILAEAHVRYRRELKLGDEL  65

Query  65   TVYHKLVHDPSAQQSQYAFDLQAIILSEARQRPAARVHEDIVVYDYKQNKKTTLPPFVEA  124
            TV  +L+           F L+   LS    +  A     +V  DY+  K   +P  +  
Sbjct  66   TVETRLID-----WDAKRFHLEHRFLSP-DGKLVATAETRLVFVDYETRKPAPIPEELLE  119

Query  125  QF  126
              
Sbjct  120  AL  121



Lambda      K        H        a         alpha
   0.321    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00031338

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily. This...  97.8    6e-26


>CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=121

 Score = 97.8 bits (244),  Expect = 6e-26, Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 57/136 (42%), Gaps = 15/136 (11%)

Query  114  VAWGEMDSMGHVNNVTYIRYAETARVYFIRNIAVHIDPAHRKEWMDLVSPKGVGVILRSL  173
            V  G++D+ GH+NN  Y+RY E AR  F+  + +          +      G+G+IL   
Sbjct  1    VRPGDIDANGHMNNARYLRYFEEARDRFLERLGL---------DLAYREALGIGLILAEA  51

Query  174  KIDYKFPMTYPDKVTVYHKLVHDPSAQQSQYAFDLQAIILSEARQRPAARVHEDIVVYDY  233
             + Y+  +   D++TV  +L+           F L+   LS    +  A     +V  DY
Sbjct  52   HVRYRRELKLGDELTVETRLID-----WDAKRFHLEHRFLSP-DGKLVATAETRLVFVDY  105

Query  234  KQNKKTTLPPFVEAQF  249
            +  K   +P  +    
Sbjct  106  ETRKPAPIPEELLEAL  121



Lambda      K        H        a         alpha
   0.321    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00031341

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00035500

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily. This...  89.7    6e-23


>CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=121

 Score = 89.7 bits (223),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 56/137 (41%), Gaps = 16/137 (12%)

Query  114  VAWGEMDSMVRHVNNVTYIRYAETARVYFIRNIAVHIDPAHRKEWMDLVSPKGVGVILRS  173
            V  G++D+   H+NN  Y+RY E AR  F+  + +          +      G+G+IL  
Sbjct  1    VRPGDIDAN-GHMNNARYLRYFEEARDRFLERLGL---------DLAYREALGIGLILAE  50

Query  174  LKIDYKFPMTYPDKVTVYHKLVHDPSAQQSQYAFDLQAIILSEARQRPAARVHEDIVVYD  233
              + Y+  +   D++TV  +L+           F L+   LS    +  A     +V  D
Sbjct  51   AHVRYRRELKLGDELTVETRLID-----WDAKRFHLEHRFLSP-DGKLVATAETRLVFVD  104

Query  234  YKQNKKTTLPPFVEAQF  250
            Y+  K   +P  +    
Sbjct  105  YETRKPAPIPEELLEAL  121



Lambda      K        H        a         alpha
   0.321    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00035502

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily. This...  62.0    7e-14


>CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=121

 Score = 62.0 bits (151),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 19/91 (21%), Positives = 34/91 (37%), Gaps = 6/91 (7%)

Query  2    DLVSPKGVGVILRSLKIDYKFPMTYPDKVTVYHKLVHDPSAQQSQYAFDLQAIILSEARQ  61
                  G+G+IL    + Y+  +   D++TV  +L+           F L+   LS    
Sbjct  37   AYREALGIGLILAEAHVRYRRELKLGDELTVETRLID-----WDAKRFHLEHRFLSP-DG  90

Query  62   RPAARVHEDIVVYDYKQNKKTTLPPFVEAQF  92
            +  A     +V  DY+  K   +P  +    
Sbjct  91   KLVATAETRLVFVDYETRKPAPIPEELLEAL  121



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00035501

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily. This...  62.0    7e-14


>CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=121

 Score = 62.0 bits (151),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 19/91 (21%), Positives = 34/91 (37%), Gaps = 6/91 (7%)

Query  2    DLVSPKGVGVILRSLKIDYKFPMTYPDKVTVYHKLVHDPSAQQSQYAFDLQAIILSEARQ  61
                  G+G+IL    + Y+  +   D++TV  +L+           F L+   LS    
Sbjct  37   AYREALGIGLILAEAHVRYRRELKLGDELTVETRLID-----WDAKRFHLEHRFLSP-DG  90

Query  62   RPAARVHEDIVVYDYKQNKKTTLPPFVEAQF  92
            +  A     +V  DY+  K   +P  +    
Sbjct  91   KLVATAETRLVFVDYETRKPAPIPEELLEAL  121



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00035504

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily. This...  62.0    7e-14


>CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=121

 Score = 62.0 bits (151),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 19/91 (21%), Positives = 34/91 (37%), Gaps = 6/91 (7%)

Query  2    DLVSPKGVGVILRSLKIDYKFPMTYPDKVTVYHKLVHDPSAQQSQYAFDLQAIILSEARQ  61
                  G+G+IL    + Y+  +   D++TV  +L+           F L+   LS    
Sbjct  37   AYREALGIGLILAEAHVRYRRELKLGDELTVETRLID-----WDAKRFHLEHRFLSP-DG  90

Query  62   RPAARVHEDIVVYDYKQNKKTTLPPFVEAQF  92
            +  A     +V  DY+  K   +P  +    
Sbjct  91   KLVATAETRLVFVDYETRKPAPIPEELLEAL  121



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00035503

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily. This...  62.0    7e-14


>CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=121

 Score = 62.0 bits (151),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 19/91 (21%), Positives = 34/91 (37%), Gaps = 6/91 (7%)

Query  2    DLVSPKGVGVILRSLKIDYKFPMTYPDKVTVYHKLVHDPSAQQSQYAFDLQAIILSEARQ  61
                  G+G+IL    + Y+  +   D++TV  +L+           F L+   LS    
Sbjct  37   AYREALGIGLILAEAHVRYRRELKLGDELTVETRLID-----WDAKRFHLEHRFLSP-DG  90

Query  62   RPAARVHEDIVVYDYKQNKKTTLPPFVEAQF  92
            +  A     +V  DY+  K   +P  +    
Sbjct  91   KLVATAETRLVFVDYETRKPAPIPEELLEAL  121



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00031342

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00035505

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily. This...  62.0    7e-14


>CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=121

 Score = 62.0 bits (151),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 19/91 (21%), Positives = 34/91 (37%), Gaps = 6/91 (7%)

Query  2    DLVSPKGVGVILRSLKIDYKFPMTYPDKVTVYHKLVHDPSAQQSQYAFDLQAIILSEARQ  61
                  G+G+IL    + Y+  +   D++TV  +L+           F L+   LS    
Sbjct  37   AYREALGIGLILAEAHVRYRRELKLGDELTVETRLID-----WDAKRFHLEHRFLSP-DG  90

Query  62   RPAARVHEDIVVYDYKQNKKTTLPPFVEAQF  92
            +  A     +V  DY+  K   +P  +    
Sbjct  91   KLVATAETRLVFVDYETRKPAPIPEELLEAL  121



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00031339

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily. This...  62.0    7e-14


>CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=121

 Score = 62.0 bits (151),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 19/91 (21%), Positives = 34/91 (37%), Gaps = 6/91 (7%)

Query  2    DLVSPKGVGVILRSLKIDYKFPMTYPDKVTVYHKLVHDPSAQQSQYAFDLQAIILSEARQ  61
                  G+G+IL    + Y+  +   D++TV  +L+           F L+   LS    
Sbjct  37   AYREALGIGLILAEAHVRYRRELKLGDELTVETRLID-----WDAKRFHLEHRFLSP-DG  90

Query  62   RPAARVHEDIVVYDYKQNKKTTLPPFVEAQF  92
            +  A     +V  DY+  K   +P  +    
Sbjct  91   KLVATAETRLVFVDYETRKPAPIPEELLEAL  121



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00035506

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00035508

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00035507

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily. This...  89.7    6e-23


>CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=121

 Score = 89.7 bits (223),  Expect = 6e-23, Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 56/137 (41%), Gaps = 16/137 (12%)

Query  114  VAWGEMDSMVRHVNNVTYIRYAETARVYFIRNIAVHIDPAHRKEWMDLVSPKGVGVILRS  173
            V  G++D+   H+NN  Y+RY E AR  F+  + +          +      G+G+IL  
Sbjct  1    VRPGDIDAN-GHMNNARYLRYFEEARDRFLERLGL---------DLAYREALGIGLILAE  50

Query  174  LKIDYKFPMTYPDKVTVYHKLVHDPSAQQSQYAFDLQAIILSEARQRPAARVHEDIVVYD  233
              + Y+  +   D++TV  +L+           F L+   LS    +  A     +V  D
Sbjct  51   AHVRYRRELKLGDELTVETRLID-----WDAKRFHLEHRFLSP-DGKLVATAETRLVFVD  104

Query  234  YKQNKKTTLPPFVEAQF  250
            Y+  K   +P  +    
Sbjct  105  YETRKPAPIPEELLEAL  121



Lambda      K        H        a         alpha
   0.321    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00031344

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily. This...  62.0    7e-14


>CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=121

 Score = 62.0 bits (151),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 19/91 (21%), Positives = 34/91 (37%), Gaps = 6/91 (7%)

Query  2    DLVSPKGVGVILRSLKIDYKFPMTYPDKVTVYHKLVHDPSAQQSQYAFDLQAIILSEARQ  61
                  G+G+IL    + Y+  +   D++TV  +L+           F L+   LS    
Sbjct  37   AYREALGIGLILAEAHVRYRRELKLGDELTVETRLID-----WDAKRFHLEHRFLSP-DG  90

Query  62   RPAARVHEDIVVYDYKQNKKTTLPPFVEAQF  92
            +  A     +V  DY+  K   +P  +    
Sbjct  91   KLVATAETRLVFVDYETRKPAPIPEELLEAL  121



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00031345

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily. This...  62.0    7e-14


>CDD:463826 pfam13279, 4HBT_2, Thioesterase-like superfamily.  This family 
contains a wide variety of enzymes, principally thioesterases. 
These enzymes are part of the Hotdog fold superfamily.
Length=121

 Score = 62.0 bits (151),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 19/91 (21%), Positives = 34/91 (37%), Gaps = 6/91 (7%)

Query  2    DLVSPKGVGVILRSLKIDYKFPMTYPDKVTVYHKLVHDPSAQQSQYAFDLQAIILSEARQ  61
                  G+G+IL    + Y+  +   D++TV  +L+           F L+   LS    
Sbjct  37   AYREALGIGLILAEAHVRYRRELKLGDELTVETRLID-----WDAKRFHLEHRFLSP-DG  90

Query  62   RPAARVHEDIVVYDYKQNKKTTLPPFVEAQF  92
            +  A     +V  DY+  K   +P  +    
Sbjct  91   KLVATAETRLVFVDYETRKPAPIPEELLEAL  121



Lambda      K        H        a         alpha
   0.319    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00031347

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00031346

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00031348

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00035509

Length=599


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 757674996


Query= TCONS_00031351

Length=1020


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1308269424


Query= TCONS_00031350

Length=1021


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0665    0.140     1.90     42.6     43.6 

Effective search space used: 1309685300


Query= TCONS_00031352

Length=1019


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1306853548


Query= TCONS_00031353

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430527 pfam09325, Vps5, Vps5 C terminal like. Vps5 is a sorti...  259     7e-89


>CDD:430527 pfam09325, Vps5, Vps5 C terminal like.  Vps5 is a sorting nexin 
that functions in membrane trafficking. This is the C terminal 
dimerization domain.
Length=236

 Score = 259 bits (663),  Expect = 7e-89, Method: Composition-based stats.
 Identities = 112/194 (58%), Positives = 148/194 (76%), Gaps = 0/194 (0%)

Query  1    MDALENQLKALLKAIDVVVAQRKGLAEAAGDFSSSLHALASVELSPALSSPLDGLSELQL  60
            +D+LE+QLK L KA++++V+QRK LA A G+F+ SL +LAS+ELS  LS  L  L+E++ 
Sbjct  33   IDSLESQLKKLYKALELLVSQRKELASATGEFAKSLASLASLELSTGLSRALSQLAEVEE  92

Query  61   RIKELYERQAQQDVLTLGITIDEYLRIIGSVKTAFSQRQKAFHSWHAAESELQKRKHTQE  120
            RIKEL ERQA QDVLTLG TIDEYLR+IGSVK  F+QR KA+ SW  AE EL K+K   E
Sbjct  93   RIKELLERQALQDVLTLGETIDEYLRLIGSVKAVFNQRVKAWQSWQNAEQELSKKKEQLE  152

Query  121  KLLRQGKTQQDRLNQANADVADAERKVHQARLLFDDMGRLMRNELQRFEKEKVEDFKSGV  180
            KLLR  K+Q D+L QA  +V + ER+V QA   F+D+  L++ EL+RFE E+V+DFK+ V
Sbjct  153  KLLRANKSQNDKLQQAKKEVEELERRVQQAEKEFEDISELIKKELERFELERVDDFKNSV  212

Query  181  ETFLESAVEAQKEV  194
            E +LESA+E+QKE+
Sbjct  213  EIYLESAIESQKEL  226



Lambda      K        H        a         alpha
   0.314    0.127    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00031354

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459737 pfam00262, Calreticulin, Calreticulin family               374     6e-130


>CDD:459737 pfam00262, Calreticulin, Calreticulin family.  
Length=369

 Score = 374 bits (964),  Expect = 6e-130, Method: Composition-based stats.
 Identities = 146/201 (73%), Positives = 160/201 (80%), Gaps = 1/201 (0%)

Query  19   IVKPDQSFQILIDGEAVKNGTLLEDFAPPVNPEKEIDDPKDKKPADWVDEAKIPDPEAKK  78
            I++PD +F+I IDGE VK+G LLEDF PPVNP KEIDDP DKKP DW D  KIPDP A K
Sbjct  169  ILRPDNTFEIRIDGEVVKSGNLLEDFKPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVK  228

Query  79   PDDWDEDAPYEIVDEEATMPEDWLEDEPTSIPDPEAEKPEDWDDEEDGDWIPPTVPNPKC  138
            PDDWDEDAP  I D +AT PE WLEDEP  IPDPEA KPEDWD+EEDG+W  P +PNPKC
Sbjct  229  PDDWDEDAPEFIPDPDATKPEGWLEDEPEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKC  288

Query  139  NEVSGCGPWTPPMKKNPAYKGKWTAPLIDNPAYKGIWKPRKIPNPAYFEDKTP-SNFEPM  197
             E  GCGPW PPM KNP YKGKW  P+IDNP YKG WKPRKIPNP YFEDK P SN EP+
Sbjct  289  EEAPGCGPWKPPMIKNPKYKGKWKPPMIDNPNYKGEWKPRKIPNPDYFEDKHPFSNLEPI  348

Query  198  GAVGFEIWTMQNDILFDNIYI  218
            GA+GFE+W+M  DILFDNIYI
Sbjct  349  GAIGFELWSMSKDILFDNIYI  369



Lambda      K        H        a         alpha
   0.309    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00031355

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459737 pfam00262, Calreticulin, Calreticulin family               374     6e-130


>CDD:459737 pfam00262, Calreticulin, Calreticulin family.  
Length=369

 Score = 374 bits (964),  Expect = 6e-130, Method: Composition-based stats.
 Identities = 146/201 (73%), Positives = 160/201 (80%), Gaps = 1/201 (0%)

Query  19   IVKPDQSFQILIDGEAVKNGTLLEDFAPPVNPEKEIDDPKDKKPADWVDEAKIPDPEAKK  78
            I++PD +F+I IDGE VK+G LLEDF PPVNP KEIDDP DKKP DW D  KIPDP A K
Sbjct  169  ILRPDNTFEIRIDGEVVKSGNLLEDFKPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVK  228

Query  79   PDDWDEDAPYEIVDEEATMPEDWLEDEPTSIPDPEAEKPEDWDDEEDGDWIPPTVPNPKC  138
            PDDWDEDAP  I D +AT PE WLEDEP  IPDPEA KPEDWD+EEDG+W  P +PNPKC
Sbjct  229  PDDWDEDAPEFIPDPDATKPEGWLEDEPEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKC  288

Query  139  NEVSGCGPWTPPMKKNPAYKGKWTAPLIDNPAYKGIWKPRKIPNPAYFEDKTP-SNFEPM  197
             E  GCGPW PPM KNP YKGKW  P+IDNP YKG WKPRKIPNP YFEDK P SN EP+
Sbjct  289  EEAPGCGPWKPPMIKNPKYKGKWKPPMIDNPNYKGEWKPRKIPNPDYFEDKHPFSNLEPI  348

Query  198  GAVGFEIWTMQNDILFDNIYI  218
            GA+GFE+W+M  DILFDNIYI
Sbjct  349  GAIGFELWSMSKDILFDNIYI  369



Lambda      K        H        a         alpha
   0.309    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00035510

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459737 pfam00262, Calreticulin, Calreticulin family               646     0.0  


>CDD:459737 pfam00262, Calreticulin, Calreticulin family.  
Length=369

 Score = 646 bits (1669),  Expect = 0.0, Method: Composition-based stats.
 Identities = 264/370 (71%), Positives = 289/370 (78%), Gaps = 3/370 (1%)

Query  50   FLEQFTA-DWDSRWTPSHAKKEDSKSEEDWAYVGEWAVEEPTVLNGMVGDKGLVVKNVAA  108
            F EQF   DW+SRW PS AKK+DS  +E   Y G+W+VEEPTV  G  GDKGLV+K+ A 
Sbjct  1    FFEQFDDYDWESRWIPSKAKKDDS-DDEIAKYDGKWSVEEPTVYPGFEGDKGLVLKSKAK  59

Query  109  HHAISAKFPKKIDNKGKTLVVQYEVKPQNSLVCGGAYMKLLQENKKLHAEEFSNATPYVI  168
            HHAISAK  K ID K KTLVVQYEVK QN L CGGAY+KLL E   L  EEFS+ TPY I
Sbjct  60   HHAISAKLDKPIDFKDKTLVVQYEVKLQNGLECGGAYIKLLSETNDLDLEEFSDKTPYTI  119

Query  169  MFGPDKCGATNKVHFIFRHKNPKTGEYEEKHMTAPPAARTTKLTTLYTLIVKPDQSFQIL  228
            MFGPDKCG+TNKVHFIFRHKNPKTGEYEEKH+  PP  RT KLT LYTLI++PD +F+I 
Sbjct  120  MFGPDKCGSTNKVHFIFRHKNPKTGEYEEKHLKKPPKIRTDKLTHLYTLILRPDNTFEIR  179

Query  229  IDGEAVKNGTLLEDFAPPVNPEKEIDDPKDKKPADWVDEAKIPDPEAKKPDDWDEDAPYE  288
            IDGE VK+G LLEDF PPVNP KEIDDP DKKP DW D  KIPDP A KPDDWDEDAP  
Sbjct  180  IDGEVVKSGNLLEDFKPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVKPDDWDEDAPEF  239

Query  289  IVDEEATMPEDWLEDEPTSIPDPEAEKPEDWDDEEDGDWIPPTVPNPKCNEVSGCGPWTP  348
            I D +AT PE WLEDEP  IPDPEA KPEDWD+EEDG+W  P +PNPKC E  GCGPW P
Sbjct  240  IPDPDATKPEGWLEDEPEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKCEEAPGCGPWKP  299

Query  349  PMKKNPAYKGKWTAPLIDNPAYKGIWKPRKIPNPAYFEDKTP-SNFEPMGAVGFEIWTMQ  407
            PM KNP YKGKW  P+IDNP YKG WKPRKIPNP YFEDK P SN EP+GA+GFE+W+M 
Sbjct  300  PMIKNPKYKGKWKPPMIDNPNYKGEWKPRKIPNPDYFEDKHPFSNLEPIGAIGFELWSMS  359

Query  408  NDILFDNIYI  417
             DILFDNIYI
Sbjct  360  KDILFDNIYI  369



Lambda      K        H        a         alpha
   0.310    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 703875588


Query= TCONS_00035511

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459737 pfam00262, Calreticulin, Calreticulin family               646     0.0  


>CDD:459737 pfam00262, Calreticulin, Calreticulin family.  
Length=369

 Score = 646 bits (1669),  Expect = 0.0, Method: Composition-based stats.
 Identities = 264/370 (71%), Positives = 289/370 (78%), Gaps = 3/370 (1%)

Query  50   FLEQFTA-DWDSRWTPSHAKKEDSKSEEDWAYVGEWAVEEPTVLNGMVGDKGLVVKNVAA  108
            F EQF   DW+SRW PS AKK+DS  +E   Y G+W+VEEPTV  G  GDKGLV+K+ A 
Sbjct  1    FFEQFDDYDWESRWIPSKAKKDDS-DDEIAKYDGKWSVEEPTVYPGFEGDKGLVLKSKAK  59

Query  109  HHAISAKFPKKIDNKGKTLVVQYEVKPQNSLVCGGAYMKLLQENKKLHAEEFSNATPYVI  168
            HHAISAK  K ID K KTLVVQYEVK QN L CGGAY+KLL E   L  EEFS+ TPY I
Sbjct  60   HHAISAKLDKPIDFKDKTLVVQYEVKLQNGLECGGAYIKLLSETNDLDLEEFSDKTPYTI  119

Query  169  MFGPDKCGATNKVHFIFRHKNPKTGEYEEKHMTAPPAARTTKLTTLYTLIVKPDQSFQIL  228
            MFGPDKCG+TNKVHFIFRHKNPKTGEYEEKH+  PP  RT KLT LYTLI++PD +F+I 
Sbjct  120  MFGPDKCGSTNKVHFIFRHKNPKTGEYEEKHLKKPPKIRTDKLTHLYTLILRPDNTFEIR  179

Query  229  IDGEAVKNGTLLEDFAPPVNPEKEIDDPKDKKPADWVDEAKIPDPEAKKPDDWDEDAPYE  288
            IDGE VK+G LLEDF PPVNP KEIDDP DKKP DW D  KIPDP A KPDDWDEDAP  
Sbjct  180  IDGEVVKSGNLLEDFKPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVKPDDWDEDAPEF  239

Query  289  IVDEEATMPEDWLEDEPTSIPDPEAEKPEDWDDEEDGDWIPPTVPNPKCNEVSGCGPWTP  348
            I D +AT PE WLEDEP  IPDPEA KPEDWD+EEDG+W  P +PNPKC E  GCGPW P
Sbjct  240  IPDPDATKPEGWLEDEPEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKCEEAPGCGPWKP  299

Query  349  PMKKNPAYKGKWTAPLIDNPAYKGIWKPRKIPNPAYFEDKTP-SNFEPMGAVGFEIWTMQ  407
            PM KNP YKGKW  P+IDNP YKG WKPRKIPNP YFEDK P SN EP+GA+GFE+W+M 
Sbjct  300  PMIKNPKYKGKWKPPMIDNPNYKGEWKPRKIPNPDYFEDKHPFSNLEPIGAIGFELWSMS  359

Query  408  NDILFDNIYI  417
             DILFDNIYI
Sbjct  360  KDILFDNIYI  369



Lambda      K        H        a         alpha
   0.310    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 703875588


Query= TCONS_00031357

Length=412
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459737 pfam00262, Calreticulin, Calreticulin family               591     0.0  


>CDD:459737 pfam00262, Calreticulin, Calreticulin family.  
Length=369

 Score = 591 bits (1527),  Expect = 0.0, Method: Composition-based stats.
 Identities = 251/354 (71%), Positives = 274/354 (77%), Gaps = 3/354 (1%)

Query  50   FLEQFTA-DWDSRWTPSHAKKEDSKSEEDWAYVGEWAVEEPTVLNGMVGDKGLVVKNVAA  108
            F EQF   DW+SRW PS AKK+DS  +E   Y G+W+VEEPTV  G  GDKGLV+K+ A 
Sbjct  1    FFEQFDDYDWESRWIPSKAKKDDS-DDEIAKYDGKWSVEEPTVYPGFEGDKGLVLKSKAK  59

Query  109  HHAISAKFPKKIDNKGKTLVVQYEVKPQNSLVCGGAYMKLLQENKKLHAEEFSNATPYVI  168
            HHAISAK  K ID K KTLVVQYEVK QN L CGGAY+KLL E   L  EEFS+ TPY I
Sbjct  60   HHAISAKLDKPIDFKDKTLVVQYEVKLQNGLECGGAYIKLLSETNDLDLEEFSDKTPYTI  119

Query  169  MFGPDKCGATNKVHFIFRHKNPKTGEYEEKHMTAPPAARTTKLTTLYTLIVKPDQSFQIL  228
            MFGPDKCG+TNKVHFIFRHKNPKTGEYEEKH+  PP  RT KLT LYTLI++PD +F+I 
Sbjct  120  MFGPDKCGSTNKVHFIFRHKNPKTGEYEEKHLKKPPKIRTDKLTHLYTLILRPDNTFEIR  179

Query  229  IDGEAVKNGTLLEDFAPPVNPEKEIDDPKDKKPADWVDEAKIPDPEAKKPDDWDEDAPYE  288
            IDGE VK+G LLEDF PPVNP KEIDDP DKKP DW D  KIPDP A KPDDWDEDAP  
Sbjct  180  IDGEVVKSGNLLEDFKPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVKPDDWDEDAPEF  239

Query  289  IVDEEATMPEDWLEDEPTSIPDPEAEKPEDWDDEEDGDWIPPTVPNPKCNEVSGCGPWTP  348
            I D +AT PE WLEDEP  IPDPEA KPEDWD+EEDG+W  P +PNPKC E  GCGPW P
Sbjct  240  IPDPDATKPEGWLEDEPEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKCEEAPGCGPWKP  299

Query  349  PMKKNPAYKGKWTAPLIDNPAYKGIWKPRKIPNPAYFEDKTP-SNFEPMGAVSF  401
            PM KNP YKGKW  P+IDNP YKG WKPRKIPNP YFEDK P SN EP+GA+ F
Sbjct  300  PMIKNPKYKGKWKPPMIDNPNYKGEWKPRKIPNPDYFEDKHPFSNLEPIGAIGF  353



Lambda      K        H        a         alpha
   0.312    0.132    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 501729466


Query= TCONS_00031356

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459737 pfam00262, Calreticulin, Calreticulin family               506     1e-180


>CDD:459737 pfam00262, Calreticulin, Calreticulin family.  
Length=369

 Score = 506 bits (1306),  Expect = 1e-180, Method: Composition-based stats.
 Identities = 206/282 (73%), Positives = 225/282 (80%), Gaps = 1/282 (0%)

Query  11   DSLVCGGAYMKLLQENKKLHAEEFSNATPYVIMFGPDKCGATNKVHFIFRHKNPKTGEYE  70
            + L CGGAY+KLL E   L  EEFS+ TPY IMFGPDKCG+TNKVHFIFRHKNPKTGEYE
Sbjct  88   NGLECGGAYIKLLSETNDLDLEEFSDKTPYTIMFGPDKCGSTNKVHFIFRHKNPKTGEYE  147

Query  71   EKHMTAPPAARTTKLTTLYTLIVKPDQSFQILIDGEAVKNGTLLEDFAPPVNPEKEIDDP  130
            EKH+  PP  RT KLT LYTLI++PD +F+I IDGE VK+G LLEDF PPVNP KEIDDP
Sbjct  148  EKHLKKPPKIRTDKLTHLYTLILRPDNTFEIRIDGEVVKSGNLLEDFKPPVNPPKEIDDP  207

Query  131  KDKKPADWVDEAKIPDPEAKKPDDWDEDAPYEIVDEEATMPEDWLEDEPTSIPDPEAEKP  190
             DKKP DW D  KIPDP A KPDDWDEDAP  I D +AT PE WLEDEP  IPDPEA KP
Sbjct  208  NDKKPEDWDDREKIPDPNAVKPDDWDEDAPEFIPDPDATKPEGWLEDEPEYIPDPEATKP  267

Query  191  EDWDDEEDGDWIPPTVPNPKCNEVSGCGPWTPPMKKNPAYKGKWTAPLIDNPAYKGIWKP  250
            EDWD+EEDG+W  P +PNPKC E  GCGPW PPM KNP YKGKW  P+IDNP YKG WKP
Sbjct  268  EDWDEEEDGEWEAPLIPNPKCEEAPGCGPWKPPMIKNPKYKGKWKPPMIDNPNYKGEWKP  327

Query  251  RKIPNPAYFEDKTP-SNFEPMGAVGFEIWTMQNDILFDNIYI  291
            RKIPNP YFEDK P SN EP+GA+GFE+W+M  DILFDNIYI
Sbjct  328  RKIPNPDYFEDKHPFSNLEPIGAIGFELWSMSKDILFDNIYI  369



Lambda      K        H        a         alpha
   0.311    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00031358

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459737 pfam00262, Calreticulin, Calreticulin family               374     6e-130


>CDD:459737 pfam00262, Calreticulin, Calreticulin family.  
Length=369

 Score = 374 bits (964),  Expect = 6e-130, Method: Composition-based stats.
 Identities = 146/201 (73%), Positives = 160/201 (80%), Gaps = 1/201 (0%)

Query  19   IVKPDQSFQILIDGEAVKNGTLLEDFAPPVNPEKEIDDPKDKKPADWVDEAKIPDPEAKK  78
            I++PD +F+I IDGE VK+G LLEDF PPVNP KEIDDP DKKP DW D  KIPDP A K
Sbjct  169  ILRPDNTFEIRIDGEVVKSGNLLEDFKPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVK  228

Query  79   PDDWDEDAPYEIVDEEATMPEDWLEDEPTSIPDPEAEKPEDWDDEEDGDWIPPTVPNPKC  138
            PDDWDEDAP  I D +AT PE WLEDEP  IPDPEA KPEDWD+EEDG+W  P +PNPKC
Sbjct  229  PDDWDEDAPEFIPDPDATKPEGWLEDEPEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKC  288

Query  139  NEVSGCGPWTPPMKKNPAYKGKWTAPLIDNPAYKGIWKPRKIPNPAYFEDKTP-SNFEPM  197
             E  GCGPW PPM KNP YKGKW  P+IDNP YKG WKPRKIPNP YFEDK P SN EP+
Sbjct  289  EEAPGCGPWKPPMIKNPKYKGKWKPPMIDNPNYKGEWKPRKIPNPDYFEDKHPFSNLEPI  348

Query  198  GAVGFEIWTMQNDILFDNIYI  218
            GA+GFE+W+M  DILFDNIYI
Sbjct  349  GAIGFELWSMSKDILFDNIYI  369



Lambda      K        H        a         alpha
   0.309    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00031360

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459737 pfam00262, Calreticulin, Calreticulin family               646     0.0  


>CDD:459737 pfam00262, Calreticulin, Calreticulin family.  
Length=369

 Score = 646 bits (1669),  Expect = 0.0, Method: Composition-based stats.
 Identities = 264/370 (71%), Positives = 289/370 (78%), Gaps = 3/370 (1%)

Query  50   FLEQFTA-DWDSRWTPSHAKKEDSKSEEDWAYVGEWAVEEPTVLNGMVGDKGLVVKNVAA  108
            F EQF   DW+SRW PS AKK+DS  +E   Y G+W+VEEPTV  G  GDKGLV+K+ A 
Sbjct  1    FFEQFDDYDWESRWIPSKAKKDDS-DDEIAKYDGKWSVEEPTVYPGFEGDKGLVLKSKAK  59

Query  109  HHAISAKFPKKIDNKGKTLVVQYEVKPQNSLVCGGAYMKLLQENKKLHAEEFSNATPYVI  168
            HHAISAK  K ID K KTLVVQYEVK QN L CGGAY+KLL E   L  EEFS+ TPY I
Sbjct  60   HHAISAKLDKPIDFKDKTLVVQYEVKLQNGLECGGAYIKLLSETNDLDLEEFSDKTPYTI  119

Query  169  MFGPDKCGATNKVHFIFRHKNPKTGEYEEKHMTAPPAARTTKLTTLYTLIVKPDQSFQIL  228
            MFGPDKCG+TNKVHFIFRHKNPKTGEYEEKH+  PP  RT KLT LYTLI++PD +F+I 
Sbjct  120  MFGPDKCGSTNKVHFIFRHKNPKTGEYEEKHLKKPPKIRTDKLTHLYTLILRPDNTFEIR  179

Query  229  IDGEAVKNGTLLEDFAPPVNPEKEIDDPKDKKPADWVDEAKIPDPEAKKPDDWDEDAPYE  288
            IDGE VK+G LLEDF PPVNP KEIDDP DKKP DW D  KIPDP A KPDDWDEDAP  
Sbjct  180  IDGEVVKSGNLLEDFKPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVKPDDWDEDAPEF  239

Query  289  IVDEEATMPEDWLEDEPTSIPDPEAEKPEDWDDEEDGDWIPPTVPNPKCNEVSGCGPWTP  348
            I D +AT PE WLEDEP  IPDPEA KPEDWD+EEDG+W  P +PNPKC E  GCGPW P
Sbjct  240  IPDPDATKPEGWLEDEPEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKCEEAPGCGPWKP  299

Query  349  PMKKNPAYKGKWTAPLIDNPAYKGIWKPRKIPNPAYFEDKTP-SNFEPMGAVGFEIWTMQ  407
            PM KNP YKGKW  P+IDNP YKG WKPRKIPNP YFEDK P SN EP+GA+GFE+W+M 
Sbjct  300  PMIKNPKYKGKWKPPMIDNPNYKGEWKPRKIPNPDYFEDKHPFSNLEPIGAIGFELWSMS  359

Query  408  NDILFDNIYI  417
             DILFDNIYI
Sbjct  360  KDILFDNIYI  369



Lambda      K        H        a         alpha
   0.310    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 703875588


Query= TCONS_00035512

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  363     1e-122


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 363 bits (934),  Expect = 1e-122, Method: Composition-based stats.
 Identities = 136/353 (39%), Positives = 196/353 (56%), Gaps = 7/353 (2%)

Query  115  FVSSKATTWIDLHDPATNNLVTRVPQSTDEELRAAVASAEKAFPGWRATSIIARQQIMFK  174
            +V S++ T I++ +PAT  ++  VP +T E++ AA+A+A  AFP WR T    R  I+ K
Sbjct  1    WVDSESET-IEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRK  59

Query  175  FVNLIRANWDRLAASITLEQGKTFADAKGDVLRGLQVAETACGITTQLTGEVLEVAKDME  234
              +L+    D LA   TLE GK  A+A+G+V R + V     G+  +L GE L       
Sbjct  60   AADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSDPGRL  119

Query  235  TRSYREPLGVVAAICPFNFPAMIPLWCIPIATITGNCIILKPSERDPGAAMILAELAREA  294
              + REPLGVV AI P+NFP ++P W I  A   GN ++LKPSE  P  A++LAEL  EA
Sbjct  120  AYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEA  179

Query  295  GFPPGVINIVHGSAKTV-DFILDEPAIKAISFVGSNRAGEYIYTRGSANGKRVQANLGAK  353
            G P GV+N+V GS   V + +++ P ++ +SF GS   G +I    + N KRV   LG K
Sbjct  180  GLPAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGK  239

Query  354  NHAAVLPDCNKNQTLNAIVGAAFGAAGQRCMALSTVVMVGETK-EWLPEMAERAKALNVN  412
            N   VL D + +  + A V  AFG AGQ C A S +++      E++ ++ E AK L V 
Sbjct  240  NPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKLKVG  299

Query  413  GGFEKGADLGPVISPESKKRIEDLIASAEQEGATILLDGRGYKPEKYPNGNFV  465
               +   D+GP+IS    +R+   +  A++EGA +L  G         NG FV
Sbjct  300  DPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGG----EAGLDNGYFV  348



Lambda      K        H        a         alpha
   0.315    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581273816


Query= TCONS_00031359

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459737 pfam00262, Calreticulin, Calreticulin family               646     0.0  


>CDD:459737 pfam00262, Calreticulin, Calreticulin family.  
Length=369

 Score = 646 bits (1669),  Expect = 0.0, Method: Composition-based stats.
 Identities = 264/370 (71%), Positives = 289/370 (78%), Gaps = 3/370 (1%)

Query  50   FLEQFTA-DWDSRWTPSHAKKEDSKSEEDWAYVGEWAVEEPTVLNGMVGDKGLVVKNVAA  108
            F EQF   DW+SRW PS AKK+DS  +E   Y G+W+VEEPTV  G  GDKGLV+K+ A 
Sbjct  1    FFEQFDDYDWESRWIPSKAKKDDS-DDEIAKYDGKWSVEEPTVYPGFEGDKGLVLKSKAK  59

Query  109  HHAISAKFPKKIDNKGKTLVVQYEVKPQNSLVCGGAYMKLLQENKKLHAEEFSNATPYVI  168
            HHAISAK  K ID K KTLVVQYEVK QN L CGGAY+KLL E   L  EEFS+ TPY I
Sbjct  60   HHAISAKLDKPIDFKDKTLVVQYEVKLQNGLECGGAYIKLLSETNDLDLEEFSDKTPYTI  119

Query  169  MFGPDKCGATNKVHFIFRHKNPKTGEYEEKHMTAPPAARTTKLTTLYTLIVKPDQSFQIL  228
            MFGPDKCG+TNKVHFIFRHKNPKTGEYEEKH+  PP  RT KLT LYTLI++PD +F+I 
Sbjct  120  MFGPDKCGSTNKVHFIFRHKNPKTGEYEEKHLKKPPKIRTDKLTHLYTLILRPDNTFEIR  179

Query  229  IDGEAVKNGTLLEDFAPPVNPEKEIDDPKDKKPADWVDEAKIPDPEAKKPDDWDEDAPYE  288
            IDGE VK+G LLEDF PPVNP KEIDDP DKKP DW D  KIPDP A KPDDWDEDAP  
Sbjct  180  IDGEVVKSGNLLEDFKPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVKPDDWDEDAPEF  239

Query  289  IVDEEATMPEDWLEDEPTSIPDPEAEKPEDWDDEEDGDWIPPTVPNPKCNEVSGCGPWTP  348
            I D +AT PE WLEDEP  IPDPEA KPEDWD+EEDG+W  P +PNPKC E  GCGPW P
Sbjct  240  IPDPDATKPEGWLEDEPEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKCEEAPGCGPWKP  299

Query  349  PMKKNPAYKGKWTAPLIDNPAYKGIWKPRKIPNPAYFEDKTP-SNFEPMGAVGFEIWTMQ  407
            PM KNP YKGKW  P+IDNP YKG WKPRKIPNP YFEDK P SN EP+GA+GFE+W+M 
Sbjct  300  PMIKNPKYKGKWKPPMIDNPNYKGEWKPRKIPNPDYFEDKHPFSNLEPIGAIGFELWSMS  359

Query  408  NDILFDNIYI  417
             DILFDNIYI
Sbjct  360  KDILFDNIYI  369



Lambda      K        H        a         alpha
   0.310    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 703875588


Query= TCONS_00031361

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  478     3e-166


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 478 bits (1234),  Expect = 3e-166, Method: Composition-based stats.
 Identities = 175/444 (39%), Positives = 246/444 (55%), Gaps = 7/444 (2%)

Query  115  FVSSKATTWIDLHDPATNNLVTRVPQSTDEELRAAVASAEKAFPGWRATSIIARQQIMFK  174
            +V S++ T I++ +PAT  ++  VP +T E++ AA+A+A  AFP WR T    R  I+ K
Sbjct  1    WVDSESET-IEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRK  59

Query  175  FVNLIRANWDRLAASITLEQGKTFADAKGDVLRGLQVAETACGITTQLTGEVLEVAKDME  234
              +L+    D LA   TLE GK  A+A+G+V R + V     G+  +L GE L       
Sbjct  60   AADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSDPGRL  119

Query  235  TRSYREPLGVVAAICPFNFPAMIPLWCIPIATITGNCIILKPSERDPGAAMILAELAREA  294
              + REPLGVV AI P+NFP ++P W I  A   GN ++LKPSE  P  A++LAEL  EA
Sbjct  120  AYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEA  179

Query  295  GFPPGVINIVHGSAKTV-DFILDEPAIKAISFVGSNRAGEYIYTRGSANGKRVQANLGAK  353
            G P GV+N+V GS   V + +++ P ++ +SF GS   G +I    + N KRV   LG K
Sbjct  180  GLPAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGK  239

Query  354  NHAAVLPDCNKNQTLNAIVGAAFGAAGQRCMALSTVVMVGETK-EWLPEMAERAKALNVN  412
            N   VL D + +  + A V  AFG AGQ C A S +++      E++ ++ E AK L V 
Sbjct  240  NPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKLKVG  299

Query  413  GGFEKGADLGPVISPESKKRIEDLIASAEQEGATILLDGRGYKPEKYPNGNFVGPTIITN  472
               +   D+GP+IS    +R+   +  A++EGA +L  G         NG FV PT++ N
Sbjct  300  DPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGG----EAGLDNGYFVEPTVLAN  355

Query  473  VTPDMKCYKEEIFGPVLICLNVPTLDDAIELINKNEYGNGAAVFTCSGSTASRFQKDIEA  532
            VTPDM+  +EEIFGPVL  +     ++AIE+ N  EYG  A VFT     A R  + +EA
Sbjct  356  VTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEA  415

Query  533  GQVGINVPIPVPLPMFSFTGNKKS  556
            G V IN           F G K+S
Sbjct  416  GMVWINDYTTGDADGLPFGGFKQS  439



Lambda      K        H        a         alpha
   0.315    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 714336584


Query= TCONS_00031362

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459737 pfam00262, Calreticulin, Calreticulin family               304     2e-104


>CDD:459737 pfam00262, Calreticulin, Calreticulin family.  
Length=369

 Score = 304 bits (780),  Expect = 2e-104, Method: Composition-based stats.
 Identities = 116/167 (69%), Positives = 127/167 (76%), Gaps = 2/167 (1%)

Query  50   FLEQFTA-DWDSRWTPSHAKKEDSKSEEDWAYVGEWAVEEPTVLNGMVGDKGLVVKNVAA  108
            F EQF   DW+SRW PS AKK+DS  +E   Y G+W+VEEPTV  G  GDKGLV+K+ A 
Sbjct  1    FFEQFDDYDWESRWIPSKAKKDDS-DDEIAKYDGKWSVEEPTVYPGFEGDKGLVLKSKAK  59

Query  109  HHAISAKFPKKIDNKGKTLVVQYEVKPQNSLVCGGAYMKLLQENKKLHAEEFSNATPYVI  168
            HHAISAK  K ID K KTLVVQYEVK QN L CGGAY+KLL E   L  EEFS+ TPY I
Sbjct  60   HHAISAKLDKPIDFKDKTLVVQYEVKLQNGLECGGAYIKLLSETNDLDLEEFSDKTPYTI  119

Query  169  MFGPDKCGATNKVHFIFRHKNPKTGEYEEKHMTAPPAARTTKLTTLY  215
            MFGPDKCG+TNKVHFIFRHKNPKTGEYEEKH+  PP  RT KLT LY
Sbjct  120  MFGPDKCGSTNKVHFIFRHKNPKTGEYEEKHLKKPPKIRTDKLTHLY  166



Lambda      K        H        a         alpha
   0.313    0.127    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00031363

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459737 pfam00262, Calreticulin, Calreticulin family               316     3e-109


>CDD:459737 pfam00262, Calreticulin, Calreticulin family.  
Length=369

 Score = 316 bits (812),  Expect = 3e-109, Method: Composition-based stats.
 Identities = 133/185 (72%), Positives = 145/185 (78%), Gaps = 1/185 (1%)

Query  19   IVKPDQSFQILIDGEAVKNGTLLEDFAPPVNPEKEIDDPKDKKPADWVDEAKIPDPEAKK  78
            I++PD +F+I IDGE VK+G LLEDF PPVNP KEIDDP DKKP DW D  KIPDP A K
Sbjct  169  ILRPDNTFEIRIDGEVVKSGNLLEDFKPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVK  228

Query  79   PDDWDEDAPYEIVDEEATMPEDWLEDEPTSIPDPEAEKPEDWDDEEDGDWIPPTVPNPKC  138
            PDDWDEDAP  I D +AT PE WLEDEP  IPDPEA KPEDWD+EEDG+W  P +PNPKC
Sbjct  229  PDDWDEDAPEFIPDPDATKPEGWLEDEPEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKC  288

Query  139  NEVSGCGPWTPPMKKNPAYKGKWTAPLIDNPAYKGIWKPRKIPNPAYFEDKTP-SNFEPM  197
             E  GCGPW PPM KNP YKGKW  P+IDNP YKG WKPRKIPNP YFEDK P SN EP+
Sbjct  289  EEAPGCGPWKPPMIKNPKYKGKWKPPMIDNPNYKGEWKPRKIPNPDYFEDKHPFSNLEPI  348

Query  198  GAVSF  202
            GA+ F
Sbjct  349  GAIGF  353



Lambda      K        H        a         alpha
   0.311    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00031364

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  338     5e-115


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 338 bits (869),  Expect = 5e-115, Method: Composition-based stats.
 Identities = 123/321 (38%), Positives = 171/321 (53%), Gaps = 10/321 (3%)

Query  1    MIPLWCIPIATITGNCIILKPSERDPGAAMILAELAREAGFPPGVINIVHGSAKTV-DFI  59
            ++P W I  A   GN ++LKPSE  P  A++LAEL  EAG P GV+N+V GS   V + +
Sbjct  141  LLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPAGVLNVVTGSGAEVGEAL  200

Query  60   LDEPAIKAISFVGSNRAGEYIYTRGSANGKRVQANLGAKNHAAVLPDCNKNQTLNAIVGA  119
            ++ P ++ +SF GS   G +I    + N KRV   LG KN   VL D + +  + A V  
Sbjct  201  VEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGKNPLIVLEDADLDAAVEAAVFG  260

Query  120  AFGAAGQRCMALSTVVMVGETK-EWLPEMAERAKALNVNGGFEKGADLGPVISPESKKRI  178
            AFG AGQ C A S +++      E++ ++ E AK L V    +   D+GP+IS    +R+
Sbjct  261  AFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKLKVGDPLDPDTDMGPLISKAQLERV  320

Query  179  EDLIASAEQEGATILLDGRGYKPEKYPNGNFVGPTIITNVTPDMKCYKEEIFGPVLICLN  238
               +  A++EGA +L  G         NG FV PT++ NVTPDM+  +EEIFGPVL  + 
Sbjct  321  LKYVEDAKEEGAKLLTGG----EAGLDNGYFVEPTVLANVTPDMRIAQEEIFGPVLSVIR  376

Query  239  VPTLDDAIELINKNEYGNGAAVFTCSGSTASRFQKDIEAGQVGINVPIPVPLPMFSFTGN  298
                ++AIE+ N  EYG  A VFT     A R  + +EAG V IN           F G 
Sbjct  377  FKDEEEAIEIANDTEYGLAAGVFTSDLERALRVARRLEAGMVWINDYTTGDADGLPFGGF  436

Query  299  KKSIAGGGANTFYGKPGLQFY  319
            K+S    G     G  GL+ Y
Sbjct  437  KQS----GFGREGGPYGLEEY  453



Lambda      K        H        a         alpha
   0.317    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00031365

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  363     1e-122


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 363 bits (934),  Expect = 1e-122, Method: Composition-based stats.
 Identities = 136/353 (39%), Positives = 196/353 (56%), Gaps = 7/353 (2%)

Query  115  FVSSKATTWIDLHDPATNNLVTRVPQSTDEELRAAVASAEKAFPGWRATSIIARQQIMFK  174
            +V S++ T I++ +PAT  ++  VP +T E++ AA+A+A  AFP WR T    R  I+ K
Sbjct  1    WVDSESET-IEVINPATGEVIATVPAATAEDVDAAIAAARAAFPAWRKTPAAERAAILRK  59

Query  175  FVNLIRANWDRLAASITLEQGKTFADAKGDVLRGLQVAETACGITTQLTGEVLEVAKDME  234
              +L+    D LA   TLE GK  A+A+G+V R + V     G+  +L GE L       
Sbjct  60   AADLLEERKDELAELETLENGKPLAEARGEVDRAIDVLRYYAGLARRLDGETLPSDPGRL  119

Query  235  TRSYREPLGVVAAICPFNFPAMIPLWCIPIATITGNCIILKPSERDPGAAMILAELAREA  294
              + REPLGVV AI P+NFP ++P W I  A   GN ++LKPSE  P  A++LAEL  EA
Sbjct  120  AYTRREPLGVVGAITPWNFPLLLPAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEA  179

Query  295  GFPPGVINIVHGSAKTV-DFILDEPAIKAISFVGSNRAGEYIYTRGSANGKRVQANLGAK  353
            G P GV+N+V GS   V + +++ P ++ +SF GS   G +I    + N KRV   LG K
Sbjct  180  GLPAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLELGGK  239

Query  354  NHAAVLPDCNKNQTLNAIVGAAFGAAGQRCMALSTVVMVGETK-EWLPEMAERAKALNVN  412
            N   VL D + +  + A V  AFG AGQ C A S +++      E++ ++ E AK L V 
Sbjct  240  NPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKKLKVG  299

Query  413  GGFEKGADLGPVISPESKKRIEDLIASAEQEGATILLDGRGYKPEKYPNGNFV  465
               +   D+GP+IS    +R+   +  A++EGA +L  G         NG FV
Sbjct  300  DPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGG----EAGLDNGYFV  348



Lambda      K        H        a         alpha
   0.315    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581273816


Query= TCONS_00031368

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      219     9e-67
CDD:463872 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase    84.6    2e-18


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 219 bits (560),  Expect = 9e-67, Method: Composition-based stats.
 Identities = 94/311 (30%), Positives = 139/311 (45%), Gaps = 50/311 (16%)

Query  36   SSYGMSESLFTSLKDIFESVVGSQSRIGIIRPQQFLEVLRRDHEMFRTAMHQDAHEFLNL  95
            S Y    +L  +L+D+F+++  +     +  P+ F + L + +  F     QDA EFL  
Sbjct  39   SRYNKDINLLCALRDLFKALQKNSKSSSVS-PKMFKKSLGKLNPDFSGYKQQDAQEFLLF  97

Query  96   LLNEVVANVEAEASKQPPIEKSLPAPETADSVDQSSSTGSKTPNTTRWVHELFEGLLTSE  155
            LL+ +  ++    S +                                + +LF G L S 
Sbjct  98   LLDGLHEDLNGNHSTENES----------------------------LITDLFRGQLKSR  129

Query  156  TQCLTCEKVSQRDEVFLDLSVDLEQHSSVTS------CLRKFSAEEMLCERNKFHCDNCG  209
             +CL+C +VS+  E F DLS+ +   S+         C  +FS  E L +  K++CD CG
Sbjct  130  LKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCG  189

Query  210  GLQEAEKRMKIKRLPRILALHLKRFKYTEDLQRLQKLFHRVVYPYHLRLFNTTDDAEDPD  269
              Q+A K++KI RLP +L +HLKRF Y       +KL   V +P  L L     +   P 
Sbjct  190  CKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW--EKLNTEVEFPLELDLSRYLAEELKPK  247

Query  270  ----RLYELYAVVVHIGGGPYHGHYVAIIKTEDRG-WLLFDDEMVEPVDKNYVKNFFGDK  324
                + Y L AVVVH  G    GHY+A IK  +   W  FDDE V  VD+          
Sbjct  248  TNNLQDYRLVAVVVHS-GSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDE-------ETA  299

Query  325  PGLACAYVLFY  335
               + AY+LFY
Sbjct  300  VLSSSAYILFY  310


>CDD:463872 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.  
Length=305

 Score = 84.6 bits (210),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 50/196 (26%), Positives = 76/196 (39%), Gaps = 26/196 (13%)

Query  130  SSSTGSKTPNTTRWVHELFEGLLTSETQCLTCEKVSQRDEVFLDLSVDL---EQHSSVTS  186
             +ST          + +LF     +  +C  C   S R+       +DL    + SS   
Sbjct  114  ENSTPPNPSPAESPLEQLFGIDAETTIRCSNCGHESVRESSTH--VLDLIYPRKPSSNNK  171

Query  187  CLRKFSAEEMLC---ER---NKFHCDNCGGLQEAEKRMKIKRLPRILALHLKRFKYTEDL  240
                 +   +L    ER    K  C+ C   Q  E R  ++ LP +L+L+       E+ 
Sbjct  172  KPPNQTFSSILKSSLERETTTKAWCEKCKRYQPLESRRTVRNLPPVLSLNAAL--TNEEW  229

Query  241  QRLQKLFHRVVY-PYHLRLFNTTDDAEDPD-RLYELYAVVVHIGGGPYHGHYVAIIKTED  298
            ++L K      + P  + L  + D   D +   YEL  VVVHIG     GH V+ +K  D
Sbjct  230  RQLWK---TPGWLPPEIGLTLSDDLQGDNEIVKYELRGVVVHIGDSGTSGHLVSFVKVAD  286

Query  299  RG--------WLLFDD  306
                      W LF+D
Sbjct  287  SELEDPTESQWYLFND  302



Lambda      K        H        a         alpha
   0.311    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 814084080


Query= TCONS_00031367

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:281842 pfam03901, Glyco_transf_22, Alg9-like mannosyltransfer...  91.3    1e-20


>CDD:281842 pfam03901, Glyco_transf_22, Alg9-like mannosyltransferase family. 
 Members of this family are mannosyltransferase enzymes. 
At least some members are localized in endoplasmic reticulum 
and involved in GPI anchor biosynthesis.
Length=414

 Score = 91.3 bits (227),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 70/283 (25%), Positives = 117/283 (41%), Gaps = 13/283 (5%)

Query  2    FAFGITTLAMRALLPEPVAPAVYRKRCRVGLFLLTIAGIIFRSELAL----LLAAHTLCL  57
            F   +T++A+  L  E    +V   +    + L+    I+ R   AL    L+    L L
Sbjct  136  FEMILTSIALYYL-LEYGNTSVSNYKYLKAVLLIAALAILGRPTSALLWLPLVLYLLLRL  194

Query  58   FSTGRIRIVQEIIPAGALGLVVGLAITVSVDSFFWQQFPLWPELAAFKFNVLAGQASAWG  117
                    +   I  G L  ++ L   + +DS+F+ +F ++  L   K+NVL+  +S +G
Sbjct  195  RGKRLKLFLFLAISLGLLVALLVLGAVILIDSYFYGRF-VFTPLNFLKYNVLSNGSSFYG  253

Query  118  THPWHFYFSSAIPRLLLNPLTYLLALPFALTHPSTRSSTAYIIIPSLVFVVIYSAQPHKE  177
            THPW+FYFS+ +P +L   L   +  P  L      S  + ++ P L+++ IYS QPHKE
Sbjct  254  THPWYFYFSNGLPNILGPFLLAFILGPLVLL-LRKVSRLSQLLAPILIWLFIYSLQPHKE  312

Query  178  WRFIAYIIP-PLTAAAAQGAAYIWTHRAKSIIYRLLSLALIASTAASFFLS---NFVLLP  233
             RF+  + P  L +AA                  LL L L  + + +        +    
Sbjct  313  ERFLYPVYPLILLSAAIALTRLSRRSWKVRKKLSLLFLLLFFNVSLARLFGLVHQYGAPL  372

Query  234  VSSANYPGARALTTLHTHANNTKPVINVYLGNLACQTGVTRFL  276
                           + +     P +NV +G     T  + FL
Sbjct  373  AVYDVMSFLNETPRENRN--PAGPPVNVCIGMECYSTPSSFFL  413



Lambda      K        H        a         alpha
   0.324    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00035513

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:281842 pfam03901, Glyco_transf_22, Alg9-like mannosyltransfer...  91.3    1e-20


>CDD:281842 pfam03901, Glyco_transf_22, Alg9-like mannosyltransferase family. 
 Members of this family are mannosyltransferase enzymes. 
At least some members are localized in endoplasmic reticulum 
and involved in GPI anchor biosynthesis.
Length=414

 Score = 91.3 bits (227),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 70/283 (25%), Positives = 117/283 (41%), Gaps = 13/283 (5%)

Query  2    FAFGITTLAMRALLPEPVAPAVYRKRCRVGLFLLTIAGIIFRSELAL----LLAAHTLCL  57
            F   +T++A+  L  E    +V   +    + L+    I+ R   AL    L+    L L
Sbjct  136  FEMILTSIALYYL-LEYGNTSVSNYKYLKAVLLIAALAILGRPTSALLWLPLVLYLLLRL  194

Query  58   FSTGRIRIVQEIIPAGALGLVVGLAITVSVDSFFWQQFPLWPELAAFKFNVLAGQASAWG  117
                    +   I  G L  ++ L   + +DS+F+ +F ++  L   K+NVL+  +S +G
Sbjct  195  RGKRLKLFLFLAISLGLLVALLVLGAVILIDSYFYGRF-VFTPLNFLKYNVLSNGSSFYG  253

Query  118  THPWHFYFSSAIPRLLLNPLTYLLALPFALTHPSTRSSTAYIIIPSLVFVVIYSAQPHKE  177
            THPW+FYFS+ +P +L   L   +  P  L      S  + ++ P L+++ IYS QPHKE
Sbjct  254  THPWYFYFSNGLPNILGPFLLAFILGPLVLL-LRKVSRLSQLLAPILIWLFIYSLQPHKE  312

Query  178  WRFIAYIIP-PLTAAAAQGAAYIWTHRAKSIIYRLLSLALIASTAASFFLS---NFVLLP  233
             RF+  + P  L +AA                  LL L L  + + +        +    
Sbjct  313  ERFLYPVYPLILLSAAIALTRLSRRSWKVRKKLSLLFLLLFFNVSLARLFGLVHQYGAPL  372

Query  234  VSSANYPGARALTTLHTHANNTKPVINVYLGNLACQTGVTRFL  276
                           + +     P +NV +G     T  + FL
Sbjct  373  AVYDVMSFLNETPRENRN--PAGPPVNVCIGMECYSTPSSFFL  413



Lambda      K        H        a         alpha
   0.324    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515324544


Query= TCONS_00031369

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      219     9e-67
CDD:463872 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase    84.6    2e-18


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 219 bits (560),  Expect = 9e-67, Method: Composition-based stats.
 Identities = 94/311 (30%), Positives = 139/311 (45%), Gaps = 50/311 (16%)

Query  36   SSYGMSESLFTSLKDIFESVVGSQSRIGIIRPQQFLEVLRRDHEMFRTAMHQDAHEFLNL  95
            S Y    +L  +L+D+F+++  +     +  P+ F + L + +  F     QDA EFL  
Sbjct  39   SRYNKDINLLCALRDLFKALQKNSKSSSVS-PKMFKKSLGKLNPDFSGYKQQDAQEFLLF  97

Query  96   LLNEVVANVEAEASKQPPIEKSLPAPETADSVDQSSSTGSKTPNTTRWVHELFEGLLTSE  155
            LL+ +  ++    S +                                + +LF G L S 
Sbjct  98   LLDGLHEDLNGNHSTENES----------------------------LITDLFRGQLKSR  129

Query  156  TQCLTCEKVSQRDEVFLDLSVDLEQHSSVTS------CLRKFSAEEMLCERNKFHCDNCG  209
             +CL+C +VS+  E F DLS+ +   S+         C  +FS  E L +  K++CD CG
Sbjct  130  LKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCG  189

Query  210  GLQEAEKRMKIKRLPRILALHLKRFKYTEDLQRLQKLFHRVVYPYHLRLFNTTDDAEDPD  269
              Q+A K++KI RLP +L +HLKRF Y       +KL   V +P  L L     +   P 
Sbjct  190  CKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW--EKLNTEVEFPLELDLSRYLAEELKPK  247

Query  270  ----RLYELYAVVVHIGGGPYHGHYVAIIKTEDRG-WLLFDDEMVEPVDKNYVKNFFGDK  324
                + Y L AVVVH  G    GHY+A IK  +   W  FDDE V  VD+          
Sbjct  248  TNNLQDYRLVAVVVHS-GSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDE-------ETA  299

Query  325  PGLACAYVLFY  335
               + AY+LFY
Sbjct  300  VLSSSAYILFY  310


>CDD:463872 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.  
Length=305

 Score = 84.6 bits (210),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 50/196 (26%), Positives = 76/196 (39%), Gaps = 26/196 (13%)

Query  130  SSSTGSKTPNTTRWVHELFEGLLTSETQCLTCEKVSQRDEVFLDLSVDL---EQHSSVTS  186
             +ST          + +LF     +  +C  C   S R+       +DL    + SS   
Sbjct  114  ENSTPPNPSPAESPLEQLFGIDAETTIRCSNCGHESVRESSTH--VLDLIYPRKPSSNNK  171

Query  187  CLRKFSAEEMLC---ER---NKFHCDNCGGLQEAEKRMKIKRLPRILALHLKRFKYTEDL  240
                 +   +L    ER    K  C+ C   Q  E R  ++ LP +L+L+       E+ 
Sbjct  172  KPPNQTFSSILKSSLERETTTKAWCEKCKRYQPLESRRTVRNLPPVLSLNAAL--TNEEW  229

Query  241  QRLQKLFHRVVY-PYHLRLFNTTDDAEDPD-RLYELYAVVVHIGGGPYHGHYVAIIKTED  298
            ++L K      + P  + L  + D   D +   YEL  VVVHIG     GH V+ +K  D
Sbjct  230  RQLWK---TPGWLPPEIGLTLSDDLQGDNEIVKYELRGVVVHIGDSGTSGHLVSFVKVAD  286

Query  299  RG--------WLLFDD  306
                      W LF+D
Sbjct  287  SELEDPTESQWYLFND  302



Lambda      K        H        a         alpha
   0.311    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0643    0.140     1.90     42.6     43.6 

Effective search space used: 814084080


Query= TCONS_00031370

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      219     9e-67
CDD:463872 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase    84.6    2e-18


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 219 bits (560),  Expect = 9e-67, Method: Composition-based stats.
 Identities = 94/311 (30%), Positives = 139/311 (45%), Gaps = 50/311 (16%)

Query  36   SSYGMSESLFTSLKDIFESVVGSQSRIGIIRPQQFLEVLRRDHEMFRTAMHQDAHEFLNL  95
            S Y    +L  +L+D+F+++  +     +  P+ F + L + +  F     QDA EFL  
Sbjct  39   SRYNKDINLLCALRDLFKALQKNSKSSSVS-PKMFKKSLGKLNPDFSGYKQQDAQEFLLF  97

Query  96   LLNEVVANVEAEASKQPPIEKSLPAPETADSVDQSSSTGSKTPNTTRWVHELFEGLLTSE  155
            LL+ +  ++    S +                                + +LF G L S 
Sbjct  98   LLDGLHEDLNGNHSTENES----------------------------LITDLFRGQLKSR  129

Query  156  TQCLTCEKVSQRDEVFLDLSVDLEQHSSVTS------CLRKFSAEEMLCERNKFHCDNCG  209
             +CL+C +VS+  E F DLS+ +   S+         C  +FS  E L +  K++CD CG
Sbjct  130  LKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCG  189

Query  210  GLQEAEKRMKIKRLPRILALHLKRFKYTEDLQRLQKLFHRVVYPYHLRLFNTTDDAEDPD  269
              Q+A K++KI RLP +L +HLKRF Y       +KL   V +P  L L     +   P 
Sbjct  190  CKQDAIKQLKISRLPPVLIIHLKRFSYNRSTW--EKLNTEVEFPLELDLSRYLAEELKPK  247

Query  270  ----RLYELYAVVVHIGGGPYHGHYVAIIKTEDRG-WLLFDDEMVEPVDKNYVKNFFGDK  324
                + Y L AVVVH  G    GHY+A IK  +   W  FDDE V  VD+          
Sbjct  248  TNNLQDYRLVAVVVHS-GSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDE-------ETA  299

Query  325  PGLACAYVLFY  335
               + AY+LFY
Sbjct  300  VLSSSAYILFY  310


>CDD:463872 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.  
Length=305

 Score = 84.6 bits (210),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 50/196 (26%), Positives = 76/196 (39%), Gaps = 26/196 (13%)

Query  130  SSSTGSKTPNTTRWVHELFEGLLTSETQCLTCEKVSQRDEVFLDLSVDL---EQHSSVTS  186
             +ST          + +LF     +  +C  C   S R+       +DL    + SS   
Sbjct  114  ENSTPPNPSPAESPLEQLFGIDAETTIRCSNCGHESVRESSTH--VLDLIYPRKPSSNNK  171

Query  187  CLRKFSAEEMLC---ER---NKFHCDNCGGLQEAEKRMKIKRLPRILALHLKRFKYTEDL  240
                 +   +L    ER    K  C+ C   Q  E R  ++ LP +L+L+       E+ 
Sbjct  172  KPPNQTFSSILKSSLERETTTKAWCEKCKRYQPLESRRTVRNLPPVLSLNAAL--TNEEW  229

Query  241  QRLQKLFHRVVY-PYHLRLFNTTDDAEDPD-RLYELYAVVVHIGGGPYHGHYVAIIKTED  298
            ++L K      + P  + L  + D   D +   YEL  VVVHIG     GH V+ +K  D
Sbjct  230  RQLWK---TPGWLPPEIGLTLSDDLQGDNEIVKYELRGVVVHIGDSGTSGHLVSFVKVAD  286

Query  299  RG--------WLLFDD  306
                      W LF+D
Sbjct  287  SELEDPTESQWYLFND  302



Lambda      K        H        a         alpha
   0.311    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 814084080


Query= TCONS_00031371

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00031372

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00035514

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459940 pfam00787, PX, PX domain. PX domains bind to phosphoin...  74.2    3e-17


>CDD:459940 pfam00787, PX, PX domain.  PX domains bind to phosphoinositides.
Length=84

 Score = 74.2 bits (183),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 34/86 (40%), Positives = 52/86 (60%), Gaps = 5/86 (6%)

Query  8   FQKPDFAVRRRFTDFYFLYKTLYREYPACAVPPLPEKHKMEYVTGDRFGPEFTSRRAWSL  67
           F   +++VRRR++DF  L+K L R++P+  +PPLP K  +      R+  EF  +R   L
Sbjct  4   FSLEEWSVRRRYSDFVELHKKLLRKFPSVIIPPLPPKRWL-----GRYNEEFIEKRRKGL  58

Query  68  HRFLKRLTLHPVLRRAPLLAIFLESP  93
            ++L+RL  HP LR + +L  FLES 
Sbjct  59  EQYLQRLLQHPELRNSEVLLEFLESD  84



Lambda      K        H        a         alpha
   0.319    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00031373

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459940 pfam00787, PX, PX domain. PX domains bind to phosphoin...  74.2    3e-17


>CDD:459940 pfam00787, PX, PX domain.  PX domains bind to phosphoinositides.
Length=84

 Score = 74.2 bits (183),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 34/86 (40%), Positives = 52/86 (60%), Gaps = 5/86 (6%)

Query  8   FQKPDFAVRRRFTDFYFLYKTLYREYPACAVPPLPEKHKMEYVTGDRFGPEFTSRRAWSL  67
           F   +++VRRR++DF  L+K L R++P+  +PPLP K  +      R+  EF  +R   L
Sbjct  4   FSLEEWSVRRRYSDFVELHKKLLRKFPSVIIPPLPPKRWL-----GRYNEEFIEKRRKGL  58

Query  68  HRFLKRLTLHPVLRRAPLLAIFLESP  93
            ++L+RL  HP LR + +L  FLES 
Sbjct  59  EQYLQRLLQHPELRNSEVLLEFLESD  84



Lambda      K        H        a         alpha
   0.319    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00031375

Length=604
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433170 pfam13393, tRNA-synt_His, Histidyl-tRNA synthetase. Th...  121     3e-31
CDD:460819 pfam03129, HGTP_anticodon, Anticodon binding domain. T...  61.8    2e-12


>CDD:433170 pfam13393, tRNA-synt_His, Histidyl-tRNA synthetase.  This is 
a family of class II aminoacyl-tRNA synthetase-like and ATP 
phosphoribosyltransferase regulatory subunits.
Length=309

 Score = 121 bits (307),  Expect = 3e-31, Method: Composition-based stats.
 Identities = 80/362 (22%), Positives = 136/362 (38%), Gaps = 55/362 (15%)

Query  85   GTKDWSGSDVLLRDRIFSTIADVFKRHGGTALDTPVFELREILAGKYGEDSKLIYDLQDQ  144
            G +D    +    + +   + D+F+  G   +  P+ E  + L    G D    + L DQ
Sbjct  1    GIRDLLPPEARRIEELRRRLLDLFRSWGYELVMPPLLEYLDSLLTGTGADLDQTFKLVDQ  60

Query  145  GGELCSLRYDLTVPFARWLAMNPDVRSIKR-YHIAKVYRRDQPAVSKGRMREFYQCDFDI  203
             G L  LR D+T   AR  A   +     R  +   V R  +P    GR RE  Q   ++
Sbjct  61   SGRLLGLRADITPQVARIDAHRLNRPGPLRLCYAGSVLRT-RPKGL-GRSREPLQVGAEL  118

Query  204  AGAFDPMVSDAEVLRIVTEVFEELGWQGRYTIKANHRKILDGVFEVCGVPPEKIRPISSA  263
             G      +DAE++ ++ E     G  G  T+   H  ++  + E  G+       + +A
Sbjct  119  IGHAGIE-ADAEIISLLLEALAAAGVPG-VTLDLGHVGLVRALLEAAGLSEALEEALRAA  176

Query  264  VDKLDKMSWADVRKEMVEEKGLHGEVADKIEKYV-AGKGARDLLESLWKDESLTANASAK  322
            + + D    A++  E+  E GL   +   +        G   L E+     +L    + +
Sbjct  177  LQRKD---AAELA-ELAAEAGLPPALRRALLALPDLYGGPEVLDEAR---AALPGLPALQ  229

Query  323  AGLEEMGLLMDYLEAFGCLDKISFDMSLARGLDYYTGVIYEVVTEGSAPAISSSAPEAQK  382
              L+E+  L   LEA G   +++FD++  RG +YYTG+++     G              
Sbjct  230  EALDELEALAALLEALGDGVRLTFDLAELRGYEYYTGIVFAAYAPGVG------------  277

Query  383  LQKSGKKDKSKSGNLDDEDRSNDPTLGVGSVAAGGRYDNLVGMFLPKAQIPCVGVSFGVD  442
                                          +A GGRYD+L   F      P  G S  ++
Sbjct  278  ----------------------------EPLARGGRYDDLGAAF--GRARPATGFSLDLE  307

Query  443  RI  444
             +
Sbjct  308  AL  309


>CDD:460819 pfam03129, HGTP_anticodon, Anticodon binding domain.  This domain 
is found in histidyl, glycyl, threonyl and prolyl tRNA 
synthetases it is probably the anticodon binding domain.
Length=94

 Score = 61.8 bits (151),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 25/102 (25%), Positives = 47/102 (46%), Gaps = 8/102 (8%)

Query  467  DVFVMAFGGKGFTGMLKERMDVCQRLWNAGIKAEFSYKIKPKLPQQFKAAEQGGVPFAVI  526
             V V+  G +    + +    + + L  AGI+ E   +    + ++F+ A+  G+PFA++
Sbjct  1    QVVVIPLG-EKAEELEEYAQKLAEELRAAGIRVELDDR-NESIGKKFRRADLIGIPFALV  58

Query  527  LGEDELAAGQVRIKELGLEEGHPEKEGVLVDLAALTDEVKAR  568
            +GE EL  G V ++           E   V L  L +++K  
Sbjct  59   VGEKELEEGTVTVRRRD------TGEQETVSLDELVEKLKEL  94



Lambda      K        H        a         alpha
   0.317    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 765147136


Query= TCONS_00035515

Length=584
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395035 pfam00082, Peptidase_S8, Subtilase family. Subtilases ...  157     2e-44
CDD:460225 pfam01483, P_proprotein, Proprotein convertase P-domai...  92.7    2e-23


>CDD:395035 pfam00082, Peptidase_S8, Subtilase family.  Subtilases are a 
family of serine proteases. They appear to have independently 
and convergently evolved an Asp/Ser/His catalytic triad, like 
that found in the trypsin serine proteases (see pfam00089). 
Structure is an alpha/beta fold containing a 7-stranded 
parallel beta sheet, order 2314567.
Length=287

 Score = 157 bits (399),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 94/280 (34%), Positives = 124/280 (44%), Gaps = 31/280 (11%)

Query  191  GKGVTTAVVDDGLD------MYSNDLKPNYFPEGSYDFNDHTPEPR-PRLSDDKHGTRCA  243
            GKGV  AV+D G+D        + D  P+  PE S DFN+   +PR      + HGT  A
Sbjct  1    GKGVVVAVLDTGIDPNHPDLSGNLDNDPSDDPEASVDFNNEWDDPRDDIDDKNGHGTHVA  60

Query  244  GEIAA-ARNDVCGVGVAYDSRVAGVRILSK-AIDDADEATAINFAY-QENDIFSCSWGPP  300
            G IAA   N +   GVA  +++ GVR+       DA  A AI++A  Q  D+ + SWG  
Sbjct  61   GIIAAGGNNSIGVSGVAPGAKILGVRVFGDGGGTDAITAQAISWAIPQGADVINMSWGSD  120

Query  301  DDGATMEGPGILIKRAFVNGVQNGRGGKGSIFVFAAGNGASFEDNCNFDGY-TNSIYSIT  359
                T  GPG         G   G    GS+FV+AAGNG+   +N +  GY       I 
Sbjct  121  K---TDGGPGSWSAAVDQLG---GAEAAGSLFVWAAGNGSPGGNNGSSVGYPAQYKNVIA  174

Query  360  VGAIDR--EGNHPSYSESCSAQ------LVVAYSSGSGDAIHTTDVGTD------KCYSF  405
            VGA+D   EGN  S+S             +VA          ++ + T       + Y  
Sbjct  175  VGAVDEASEGNLASFSSYGPTLDGRLKPDIVAPGGNITGGNISSTLLTTTSDPPNQGYDS  234

Query  406  HGGTSAAGPLAAGTVALALSARPELTWRDAQYLMVETAVP  445
              GTS A P  AG  AL   A P LT    + L+V TA  
Sbjct  235  MSGTSMATPHVAGAAALLKQAYPNLTPETLKALLVNTATD  274


>CDD:460225 pfam01483, P_proprotein, Proprotein convertase P-domain.  A unique 
feature of the eukaryotic subtilisin-like proprotein convertases 
is the presence of an additional highly conserved 
sequence of approximately 150 residues (P domain) located immediately 
downstream of the catalytic domain.
Length=86

 Score = 92.7 bits (231),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 38/56 (68%), Gaps = 0/56 (0%)

Query  529  LEHVTVTMNVNHTRRGDLSVELRSPEGIVSHLSTTRKSDNEKAGYVDWTFMTVAHW  584
            LEHV V++N+ HTRRGDL + L SP G  S L   R  D   AG++DWTFM+V HW
Sbjct  1    LEHVQVSVNITHTRRGDLRITLTSPSGTRSVLLNRRGGDTSSAGFLDWTFMSVHHW  56



Lambda      K        H        a         alpha
   0.316    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 735258576


Query= TCONS_00031376

Length=1081
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396255 pfam01593, Amino_oxidase, Flavin containing amine oxid...  247     6e-73
CDD:461307 pfam04433, SWIRM, SWIRM domain. This SWIRM domain is a...  88.8    7e-22


>CDD:396255 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase. 
 This family consists of various amine oxidases, including 
maze polyamine oxidase (PAO) and various flavin containing 
monoamine oxidases (MAO). The aligned region includes the 
flavin binding site of these enzymes. The family also contains 
phytoene dehydrogenases and related enzymes. In vertebrates 
MAO plays an important role regulating the intracellular 
levels of amines via there oxidation; these include various 
neurotransmitters, neurotoxins and trace amines. In lower eukaryotes 
such as aspergillus and in bacteria the main role 
of amine oxidases is to provide a source of ammonium. PAOs in 
plants, bacteria and protozoa oxidase spermidine and spermine 
to an aminobutyral, diaminopropane and hydrogen peroxide 
and are involved in the catabolism of polyamines. Other members 
of this family include tryptophan 2-monooxygenase, putrescine 
oxidase, corticosteroid binding proteins and antibacterial 
glycoproteins.
Length=446

 Score = 247 bits (632),  Expect = 6e-73, Method: Composition-based stats.
 Identities = 136/575 (24%), Positives = 191/575 (33%), Gaps = 137/575 (24%)

Query  308  MAGLGCARQLEGLFKQYHDPLTSPRVVVLEGRRRIGGRIYSHPLRSLQSSKLAPGVVPKA  367
            +AGL  AR+L               V VLE R R+GGRI +                   
Sbjct  1    LAGLAAARELLRA---------GHDVTVLEARDRVGGRIRTVRDDGF-----------LI  40

Query  368  EMGAQIIVGFEHGNPLDQIIRGQLALP-YHLLRDISTIYDIDGSAVDEVQDAMDERLYID  426
            E+GA    G     PL  +++ +L L    +L D +  Y +                   
Sbjct  41   ELGAMWFHG--AQPPLLALLK-ELGLEDRLVLPDPAPFYTV-------------------  78

Query  427  VLDRSGLYRHNAVIVPTAEGDRRLIDSGRDLTMSDGLTVRQYEEARAAGTVELLFPNKKV  486
            +      Y  +   VP       L++ GR L++ +                       K+
Sbjct  79   LFAGGRRYPGDFRRVPAGW--EGLLEFGRLLSIPE-----------------------KL  113

Query  487  RRGVGHKTADIKATIPPVPTDLGPAEEQPAALACQAMGWKLKDGVPPTASLNLDPVAKAS  546
            R G+    +D           L  +                         L         
Sbjct  114  RLGLAALASDALDEFDLDDFSLAESLLF----------------------LGRRGPGDVE  151

Query  547  MWPTLGAVMDEGVKQYQRMLPLTPKDMRLINWHFANLEYANATNIGKLSL----SGWDQD  602
            +W               R++             FA L +A+    G  S           
Sbjct  152  VW--------------DRLID---------PELFAALPFASGAFAGDPSELSAGLALPLL  188

Query  603  LG-NEFEGEHSQVIGGYQQVPYGLWSLPTKLDVRTNKIVSKIAYDSTGSGKRKTVVHCED  661
                   G      GG   +P  L +     DVR N  V  I  +  G       V   D
Sbjct  189  WALLGEGGSLLLPRGGLGALPDALAAQLLGGDVRLNTRVRSIDREGDG-----VTVTLTD  243

Query  662  GESFVADKVVFTASLGVLKHHSIEFSPPLPDWKRGAIERLGFGVMNKVILVFEEPFWDTE  721
            GE   AD V+ T  LGVLK   I F+PPLP  K  AI  LG+G +NKV L F+  FW   
Sbjct  244  GEVIEADAVIVTVPLGVLKR--ILFTPPLPPEKARAIRNLGYGPVNKVHLEFDRKFWPDL  301

Query  722  RDMFGLLREPKNRDSMVQEDYAANRGRFYLFWNCMKTTGLPVLIA-LMAGDAAHQAEYTP  780
              +  L        +            +  F N        +L+  +  GD A + E   
Sbjct  302  GLLGLLSELLTGLGTAFS---------WLTFPNRAPPGKGLLLLVYVGPGDRARELEGLS  352

Query  781  DGEIIAEVTSQLRNIFKHVAVPDPLETIITRWASDRFTRGSYSYVAAQALPGDYD-LMAK  839
            D E++  V   LR +F     P+PL  +++ W +D + RGSYS         DY  L   
Sbjct  353  DEELLQAVLRDLRKLFG-EEAPEPLRVLVSDWHTDPWPRGSYSLPQYGPGHDDYRPLART  411

Query  840  PVGNLHFAGEATCGTHPATVHGAYLSGLRAASEII  874
            P   L FAGE T   +P TV GA  SG RAA  ++
Sbjct  412  PDPGLFFAGEHTSTGYPGTVEGAIESGRRAARAVL  446


>CDD:461307 pfam04433, SWIRM, SWIRM domain.  This SWIRM domain is a small 
alpha-helical domain of about 85 amino acid residues found 
in chromosomal proteins. It contains a helix-turn helix motif 
and binds to DNA.
Length=78

 Score = 88.8 bits (221),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 29/79 (37%), Positives = 37/79 (47%), Gaps = 4/79 (5%)

Query  202  NPYSLHKKEQEALQDHLCH--LHVTAYLNIRNGILRLWTRNPMVSVTKDEALGCAKDYRW  259
            +P  LH  E+  L +           YL IRN IL LW  NP   +TK +A    K    
Sbjct  2    DPDKLHPIEKRLLPEFFNGKSKTPEVYLEIRNFILNLWRENPKEYLTKTDARRALKG--D  59

Query  260  MGLASFAYEWLVRNGYINF  278
            + L S  +E+L R G INF
Sbjct  60   VNLISRIHEFLERWGLINF  78



Lambda      K        H        a         alpha
   0.315    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1394637860


Query= TCONS_00031377

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00031378

Length=1458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:408820 pfam19050, PhoD_2, PhoD related phosphatase. This entr...  242     2e-69


>CDD:408820 pfam19050, PhoD_2, PhoD related phosphatase.  This entry contains 
a domain that is presumed to be a phosphatase enzyme based 
on its similarity to pfam09423.
Length=543

 Score = 242 bits (619),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 142/508 (28%), Positives = 231/508 (45%), Gaps = 102/508 (20%)

Query  708   FWVPARGQSMNIMF--YSCNGFSLGVDSN---KFCGPDPLWRDVLNEHQ-TRPFHVMIGG  761
             F V  R    N  F  +S N F+L V++N   +  G   +W+D+L +H     FHV +G 
Sbjct  26    FLVAGR-YETNWRFIAHSGNDFALNVNANERARLGGVGFMWKDILQKHVECGGFHVQLGL  84

Query  762   GDQISNDRVMLDSPRFQEWIKVKNLTDKYDMPFDPEFRAEIESFYLENYSAWFSQGLFSL  821
             G QI  DR+  + P  ++W+ +    ++ + P+  +   ++   Y   Y++ F Q     
Sbjct  85    GGQIYADRLWKEIPLLKQWLAISGKENRKNAPWTAKHEEDVSHAYFHYYTSHFDQPHLRE  144

Query  822   ANSQIPMVNIWNDHDIIEGFGSYPDEFMATPVISGLGRIAFKYYLLFQHHSLTE-----E  876
             A +QIP V   +DHDI +GFGSYP+    + +   +GRI  + YLLFQHH+  E      
Sbjct  145   AFAQIPHVLQLDDHDIFDGFGSYPEYMQFSNMFKNIGRIGIEMYLLFQHHTTLEILRNVS  204

Query  877   TEAD-----EPSWLLGAQLGPYINQRSRNVFMSLGKEVAFLGLDCRTERLSDEILSEQTC  931
              + D        W     LGP                V  +G D R+ER   ++++  T 
Sbjct  205   NDLDLFTITGTGWHFVKYLGP---------------AVVVVGPDTRSERNPHQVMAGPTY  249

Query  932   DLIWDRCHREIVRGETKHLLVLSSVPVAYPRMAMLKNILNS-------------------  972
               ++ +     +    +H + + SVP+ YPR+  +++I N+                   
Sbjct  250   QGLFPKV--ATLPPSVQHCIWMISVPLIYPRLETVEHIANTVATGKKAVTGTYNMLGKVT  307

Query  973   --------------------RKSLGKAGFFGGFVNKNGSKVEIFD---DHWTAKHHKVER  1009
                                 +K++GK+G  GG ++  G +++I D   D WT +   +ER
Sbjct  308   SSVAGVVGAKEVVGSGFSSVKKAVGKSGLMGGVLSPFG-EIDILDELRDQWTHESKDLER  366

Query  1010  TYLLEDLQDLAAAKSVRVTILSGDVHLAAIGQFY--SNPKLNLPKDKDYRYMPNVISSAI  1067
             TYL+  LQ +A  KS+R+T LSGDV+    G  +  S+P        D++ M  +ISSAI
Sbjct  367   TYLIRTLQGIAHQKSIRMTFLSGDVNCCGAGLVHDPSHP-------SDHKTMYQIISSAI  419

Query  1068  ADMPETEMVSDMLNKRNHVH---------HLDTNTDEDMIPIFTHDVNNKSRNNKRLLPR  1118
              + P    V  +L+    ++         +  ++T EDM+ IF  DVN + R +K+L+ R
Sbjct  420   VNAPPPSYVLKLLHNNKPLYVPQNGQRSTNQPSDTKEDMMEIFATDVNGRPREHKKLMGR  479

Query  1119  RNWCAIREYQP-------GSTPPGSPES  1139
             RN+ A   Y P       G   PG    
Sbjct  480   RNYVAFVAYDPEVVQGSFGQVAPGPQRG  507



Lambda      K        H        a         alpha
   0.314    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1844111358


Query= TCONS_00031379

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396255 pfam01593, Amino_oxidase, Flavin containing amine oxid...  137     4e-37


>CDD:396255 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase. 
 This family consists of various amine oxidases, including 
maze polyamine oxidase (PAO) and various flavin containing 
monoamine oxidases (MAO). The aligned region includes the 
flavin binding site of these enzymes. The family also contains 
phytoene dehydrogenases and related enzymes. In vertebrates 
MAO plays an important role regulating the intracellular 
levels of amines via there oxidation; these include various 
neurotransmitters, neurotoxins and trace amines. In lower eukaryotes 
such as aspergillus and in bacteria the main role 
of amine oxidases is to provide a source of ammonium. PAOs in 
plants, bacteria and protozoa oxidase spermidine and spermine 
to an aminobutyral, diaminopropane and hydrogen peroxide 
and are involved in the catabolism of polyamines. Other members 
of this family include tryptophan 2-monooxygenase, putrescine 
oxidase, corticosteroid binding proteins and antibacterial 
glycoproteins.
Length=446

 Score = 137 bits (347),  Expect = 4e-37, Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 71/170 (42%), Gaps = 12/170 (7%)

Query  2    NKVILVFEEPFWDTERDMFGLLREPKNRDSMVQEDYAANRGRFYLFWNCMKTTGLPVLIA  61
            NKV L F+  FW     +  L        +            +  F N        +L+ 
Sbjct  287  NKVHLEFDRKFWPDLGLLGLLSELLTGLGTAFS---------WLTFPNRAPPGKGLLLLV  337

Query  62   -LMAGDAAHQAEYTPDGEIIAEVTSQLRNIFKHVAVPDPLETIITRWASDRFTRGSYSYV  120
             +  GD A + E   D E++  V   LR +F     P+PL  +++ W +D + RGSYS  
Sbjct  338  YVGPGDRARELEGLSDEELLQAVLRDLRKLFG-EEAPEPLRVLVSDWHTDPWPRGSYSLP  396

Query  121  AAQALPGDYD-LMAKPVGNLHFAGEATCGTHPATVHGAYLSGLRAASEII  169
                   DY  L   P   L FAGE T   +P TV GA  SG RAA  ++
Sbjct  397  QYGPGHDDYRPLARTPDPGLFFAGEHTSTGYPGTVEGAIESGRRAARAVL  446



Lambda      K        H        a         alpha
   0.315    0.130    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453018240


Query= TCONS_00035517

Length=1031
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:408820 pfam19050, PhoD_2, PhoD related phosphatase. This entr...  176     3e-47


>CDD:408820 pfam19050, PhoD_2, PhoD related phosphatase.  This entry contains 
a domain that is presumed to be a phosphatase enzyme based 
on its similarity to pfam09423.
Length=543

 Score = 176 bits (448),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 104/381 (27%), Positives = 173/381 (45%), Gaps = 77/381 (20%)

Query  708   FWVPARGQSMNIMF--YSCNGFSLGVDSN---KFCGPDPLWRDVLNEHQ-TRPFHVMIGG  761
             F V  R    N  F  +S N F+L V++N   +  G   +W+D+L +H     FHV +G 
Sbjct  26    FLVAGR-YETNWRFIAHSGNDFALNVNANERARLGGVGFMWKDILQKHVECGGFHVQLGL  84

Query  762   GDQISNDRVMLDSPRFQEWIKVKNLTDKYDMPFDPEFRAEIESFYLENYSAWFSQGLFSL  821
             G QI  DR+  + P  ++W+ +    ++ + P+  +   ++   Y   Y++ F Q     
Sbjct  85    GGQIYADRLWKEIPLLKQWLAISGKENRKNAPWTAKHEEDVSHAYFHYYTSHFDQPHLRE  144

Query  822   ANSQIPMVNIWNDHDIIEGFGSYPDEFMATPVISGLGRIAFKYYLLFQHHSLTE-----E  876
             A +QIP V   +DHDI +GFGSYP+    + +   +GRI  + YLLFQHH+  E      
Sbjct  145   AFAQIPHVLQLDDHDIFDGFGSYPEYMQFSNMFKNIGRIGIEMYLLFQHHTTLEILRNVS  204

Query  877   TEAD-----EPSWLLGAQLGPYINQRSRNVFMSLGKEVAFLGLDCRTERLSDEILSEQTC  931
              + D        W     LGP                V  +G D R+ER   ++++  T 
Sbjct  205   NDLDLFTITGTGWHFVKYLGP---------------AVVVVGPDTRSERNPHQVMAGPTY  249

Query  932   DLIWDRCHREIVRGETKHLLVLSSVPVAYPRMAMLKNILNS-------------------  972
               ++ +     +    +H + + SVP+ YPR+  +++I N+                   
Sbjct  250   QGLFPKV--ATLPPSVQHCIWMISVPLIYPRLETVEHIANTVATGKKAVTGTYNMLGKVT  307

Query  973   --------------------RKSLGKAGFFGGFVNKNGSKVEIFD---DHWTAKHHKVER  1009
                                 +K++GK+G  GG ++  G +++I D   D WT +   +ER
Sbjct  308   SSVAGVVGAKEVVGSGFSSVKKAVGKSGLMGGVLSPFG-EIDILDELRDQWTHESKDLER  366

Query  1010  TYLLEDLQDLAAAKSVRVTIL  1030
             TYL+  LQ +A  KS+R+T L
Sbjct  367   TYLIRTLQGIAHQKSIRMTFL  387



Lambda      K        H        a         alpha
   0.314    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1323844060


Query= TCONS_00035518

Length=1031
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:408820 pfam19050, PhoD_2, PhoD related phosphatase. This entr...  176     3e-47


>CDD:408820 pfam19050, PhoD_2, PhoD related phosphatase.  This entry contains 
a domain that is presumed to be a phosphatase enzyme based 
on its similarity to pfam09423.
Length=543

 Score = 176 bits (448),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 104/381 (27%), Positives = 173/381 (45%), Gaps = 77/381 (20%)

Query  708   FWVPARGQSMNIMF--YSCNGFSLGVDSN---KFCGPDPLWRDVLNEHQ-TRPFHVMIGG  761
             F V  R    N  F  +S N F+L V++N   +  G   +W+D+L +H     FHV +G 
Sbjct  26    FLVAGR-YETNWRFIAHSGNDFALNVNANERARLGGVGFMWKDILQKHVECGGFHVQLGL  84

Query  762   GDQISNDRVMLDSPRFQEWIKVKNLTDKYDMPFDPEFRAEIESFYLENYSAWFSQGLFSL  821
             G QI  DR+  + P  ++W+ +    ++ + P+  +   ++   Y   Y++ F Q     
Sbjct  85    GGQIYADRLWKEIPLLKQWLAISGKENRKNAPWTAKHEEDVSHAYFHYYTSHFDQPHLRE  144

Query  822   ANSQIPMVNIWNDHDIIEGFGSYPDEFMATPVISGLGRIAFKYYLLFQHHSLTE-----E  876
             A +QIP V   +DHDI +GFGSYP+    + +   +GRI  + YLLFQHH+  E      
Sbjct  145   AFAQIPHVLQLDDHDIFDGFGSYPEYMQFSNMFKNIGRIGIEMYLLFQHHTTLEILRNVS  204

Query  877   TEAD-----EPSWLLGAQLGPYINQRSRNVFMSLGKEVAFLGLDCRTERLSDEILSEQTC  931
              + D        W     LGP                V  +G D R+ER   ++++  T 
Sbjct  205   NDLDLFTITGTGWHFVKYLGP---------------AVVVVGPDTRSERNPHQVMAGPTY  249

Query  932   DLIWDRCHREIVRGETKHLLVLSSVPVAYPRMAMLKNILNS-------------------  972
               ++ +     +    +H + + SVP+ YPR+  +++I N+                   
Sbjct  250   QGLFPKV--ATLPPSVQHCIWMISVPLIYPRLETVEHIANTVATGKKAVTGTYNMLGKVT  307

Query  973   --------------------RKSLGKAGFFGGFVNKNGSKVEIFD---DHWTAKHHKVER  1009
                                 +K++GK+G  GG ++  G +++I D   D WT +   +ER
Sbjct  308   SSVAGVVGAKEVVGSGFSSVKKAVGKSGLMGGVLSPFG-EIDILDELRDQWTHESKDLER  366

Query  1010  TYLLEDLQDLAAAKSVRVTIL  1030
             TYL+  LQ +A  KS+R+T L
Sbjct  367   TYLIRTLQGIAHQKSIRMTFL  387



Lambda      K        H        a         alpha
   0.314    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1323844060


Query= TCONS_00035519

Length=936
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:408820 pfam19050, PhoD_2, PhoD related phosphatase. This entr...  130     4e-32


>CDD:408820 pfam19050, PhoD_2, PhoD related phosphatase.  This entry contains 
a domain that is presumed to be a phosphatase enzyme based 
on its similarity to pfam09423.
Length=543

 Score = 130 bits (328),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 32/229 (14%)

Query  708  FWVPARGQSMNIMF--YSCNGFSLGVDSN---KFCGPDPLWRDVLNEHQ-TRPFHVMIGG  761
            F V  R    N  F  +S N F+L V++N   +  G   +W+D+L +H     FHV +G 
Sbjct  26   FLVAGR-YETNWRFIAHSGNDFALNVNANERARLGGVGFMWKDILQKHVECGGFHVQLGL  84

Query  762  GDQISNDRVMLDSPRFQEWIKVKNLTDKYDMPFDPEFRAEIESFYLENYSAWFSQGLFSL  821
            G QI  DR+  + P  ++W+ +    ++ + P+  +   ++   Y   Y++ F Q     
Sbjct  85   GGQIYADRLWKEIPLLKQWLAISGKENRKNAPWTAKHEEDVSHAYFHYYTSHFDQPHLRE  144

Query  822  ANSQIPMVNIWNDHDIIEGFGSYPDEFMATPVISGLGRIAFKYYLLFQHHSLTE-----E  876
            A +QIP V   +DHDI +GFGSYP+    + +   +GRI  + YLLFQHH+  E      
Sbjct  145  AFAQIPHVLQLDDHDIFDGFGSYPEYMQFSNMFKNIGRIGIEMYLLFQHHTTLEILRNVS  204

Query  877  TEAD-----EPSWLLGAQLGPYINQRSRNVFMSLGKEVAFLGLDCRTER  920
             + D        W     LGP                V  +G D R+ER
Sbjct  205  NDLDLFTITGTGWHFVKYLGP---------------AVVVVGPDTRSER  238



Lambda      K        H        a         alpha
   0.313    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1207267274


Query= TCONS_00035520

Length=517


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.123    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00035521

Length=881
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:408820 pfam19050, PhoD_2, PhoD related phosphatase. This entr...  243     3e-71


>CDD:408820 pfam19050, PhoD_2, PhoD related phosphatase.  This entry contains 
a domain that is presumed to be a phosphatase enzyme based 
on its similarity to pfam09423.
Length=543

 Score = 243 bits (621),  Expect = 3e-71, Method: Composition-based stats.
 Identities = 142/508 (28%), Positives = 231/508 (45%), Gaps = 102/508 (20%)

Query  164  FWVPARGQSMNIMF--YSCNGFSLGVDSN---KFCGPDPLWRDVLNEHQ-TRPFHVMIGG  217
            F V  R    N  F  +S N F+L V++N   +  G   +W+D+L +H     FHV +G 
Sbjct  26   FLVAGR-YETNWRFIAHSGNDFALNVNANERARLGGVGFMWKDILQKHVECGGFHVQLGL  84

Query  218  GDQISNDRVMLDSPRFQEWIKVKNLTDKYDMPFDPEFRAEIESFYLENYSAWFSQGLFSL  277
            G QI  DR+  + P  ++W+ +    ++ + P+  +   ++   Y   Y++ F Q     
Sbjct  85   GGQIYADRLWKEIPLLKQWLAISGKENRKNAPWTAKHEEDVSHAYFHYYTSHFDQPHLRE  144

Query  278  ANSQIPMVNIWNDHDIIEGFGSYPDEFMATPVISGLGRIAFKYYLLFQHHSLTE-----E  332
            A +QIP V   +DHDI +GFGSYP+    + +   +GRI  + YLLFQHH+  E      
Sbjct  145  AFAQIPHVLQLDDHDIFDGFGSYPEYMQFSNMFKNIGRIGIEMYLLFQHHTTLEILRNVS  204

Query  333  TEAD-----EPSWLLGAQLGPYINQRSRNVFMSLGKEVAFLGLDCRTERLSDEILSEQTC  387
             + D        W     LGP                V  +G D R+ER   ++++  T 
Sbjct  205  NDLDLFTITGTGWHFVKYLGP---------------AVVVVGPDTRSERNPHQVMAGPTY  249

Query  388  DLIWDRCHREIVRGETKHLLVLSSVPVAYPRMAMLKNILNS-------------------  428
              ++ +     +    +H + + SVP+ YPR+  +++I N+                   
Sbjct  250  QGLFPKV--ATLPPSVQHCIWMISVPLIYPRLETVEHIANTVATGKKAVTGTYNMLGKVT  307

Query  429  --------------------RKSLGKAGFFGGFVNKNGSKVEIFD---DHWTAKHHKVER  465
                                +K++GK+G  GG ++  G +++I D   D WT +   +ER
Sbjct  308  SSVAGVVGAKEVVGSGFSSVKKAVGKSGLMGGVLSPFG-EIDILDELRDQWTHESKDLER  366

Query  466  TYLLEDLQDLAAAKSVRVTILSGDVHLAAIGQFY--SNPKLNLPKDKDYRYMPNVISSAI  523
            TYL+  LQ +A  KS+R+T LSGDV+    G  +  S+P        D++ M  +ISSAI
Sbjct  367  TYLIRTLQGIAHQKSIRMTFLSGDVNCCGAGLVHDPSHP-------SDHKTMYQIISSAI  419

Query  524  ADMPETEMVSDMLNKRNHVH---------HLDTNTDEDMIPIFTHDVNNKSRNNKRLLPR  574
             + P    V  +L+    ++         +  ++T EDM+ IF  DVN + R +K+L+ R
Sbjct  420  VNAPPPSYVLKLLHNNKPLYVPQNGQRSTNQPSDTKEDMMEIFATDVNGRPREHKKLMGR  479

Query  575  RNWCAIREYQP-------GSTPPGSPES  595
            RN+ A   Y P       G   PG    
Sbjct  480  RNYVAFVAYDPEVVQGSFGQVAPGPQRG  507



Lambda      K        H        a         alpha
   0.316    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1128314004


Query= TCONS_00031380

Length=1031
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:408820 pfam19050, PhoD_2, PhoD related phosphatase. This entr...  176     3e-47


>CDD:408820 pfam19050, PhoD_2, PhoD related phosphatase.  This entry contains 
a domain that is presumed to be a phosphatase enzyme based 
on its similarity to pfam09423.
Length=543

 Score = 176 bits (448),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 104/381 (27%), Positives = 173/381 (45%), Gaps = 77/381 (20%)

Query  708   FWVPARGQSMNIMF--YSCNGFSLGVDSN---KFCGPDPLWRDVLNEHQ-TRPFHVMIGG  761
             F V  R    N  F  +S N F+L V++N   +  G   +W+D+L +H     FHV +G 
Sbjct  26    FLVAGR-YETNWRFIAHSGNDFALNVNANERARLGGVGFMWKDILQKHVECGGFHVQLGL  84

Query  762   GDQISNDRVMLDSPRFQEWIKVKNLTDKYDMPFDPEFRAEIESFYLENYSAWFSQGLFSL  821
             G QI  DR+  + P  ++W+ +    ++ + P+  +   ++   Y   Y++ F Q     
Sbjct  85    GGQIYADRLWKEIPLLKQWLAISGKENRKNAPWTAKHEEDVSHAYFHYYTSHFDQPHLRE  144

Query  822   ANSQIPMVNIWNDHDIIEGFGSYPDEFMATPVISGLGRIAFKYYLLFQHHSLTE-----E  876
             A +QIP V   +DHDI +GFGSYP+    + +   +GRI  + YLLFQHH+  E      
Sbjct  145   AFAQIPHVLQLDDHDIFDGFGSYPEYMQFSNMFKNIGRIGIEMYLLFQHHTTLEILRNVS  204

Query  877   TEAD-----EPSWLLGAQLGPYINQRSRNVFMSLGKEVAFLGLDCRTERLSDEILSEQTC  931
              + D        W     LGP                V  +G D R+ER   ++++  T 
Sbjct  205   NDLDLFTITGTGWHFVKYLGP---------------AVVVVGPDTRSERNPHQVMAGPTY  249

Query  932   DLIWDRCHREIVRGETKHLLVLSSVPVAYPRMAMLKNILNS-------------------  972
               ++ +     +    +H + + SVP+ YPR+  +++I N+                   
Sbjct  250   QGLFPKV--ATLPPSVQHCIWMISVPLIYPRLETVEHIANTVATGKKAVTGTYNMLGKVT  307

Query  973   --------------------RKSLGKAGFFGGFVNKNGSKVEIFD---DHWTAKHHKVER  1009
                                 +K++GK+G  GG ++  G +++I D   D WT +   +ER
Sbjct  308   SSVAGVVGAKEVVGSGFSSVKKAVGKSGLMGGVLSPFG-EIDILDELRDQWTHESKDLER  366

Query  1010  TYLLEDLQDLAAAKSVRVTIL  1030
             TYL+  LQ +A  KS+R+T L
Sbjct  367   TYLIRTLQGIAHQKSIRMTFL  387



Lambda      K        H        a         alpha
   0.314    0.131    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0785    0.140     1.90     42.6     43.6 

Effective search space used: 1323844060


Query= TCONS_00031381

Length=1438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:408820 pfam19050, PhoD_2, PhoD related phosphatase. This entr...  241     2e-69


>CDD:408820 pfam19050, PhoD_2, PhoD related phosphatase.  This entry contains 
a domain that is presumed to be a phosphatase enzyme based 
on its similarity to pfam09423.
Length=543

 Score = 241 bits (618),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 142/508 (28%), Positives = 231/508 (45%), Gaps = 102/508 (20%)

Query  688   FWVPARGQSMNIMF--YSCNGFSLGVDSN---KFCGPDPLWRDVLNEHQ-TRPFHVMIGG  741
             F V  R    N  F  +S N F+L V++N   +  G   +W+D+L +H     FHV +G 
Sbjct  26    FLVAGR-YETNWRFIAHSGNDFALNVNANERARLGGVGFMWKDILQKHVECGGFHVQLGL  84

Query  742   GDQISNDRVMLDSPRFQEWIKVKNLTDKYDMPFDPEFRAEIESFYLENYSAWFSQGLFSL  801
             G QI  DR+  + P  ++W+ +    ++ + P+  +   ++   Y   Y++ F Q     
Sbjct  85    GGQIYADRLWKEIPLLKQWLAISGKENRKNAPWTAKHEEDVSHAYFHYYTSHFDQPHLRE  144

Query  802   ANSQIPMVNIWNDHDIIEGFGSYPDEFMATPVISGLGRIAFKYYLLFQHHSLTE-----E  856
             A +QIP V   +DHDI +GFGSYP+    + +   +GRI  + YLLFQHH+  E      
Sbjct  145   AFAQIPHVLQLDDHDIFDGFGSYPEYMQFSNMFKNIGRIGIEMYLLFQHHTTLEILRNVS  204

Query  857   TEAD-----EPSWLLGAQLGPYINQRSRNVFMSLGKEVAFLGLDCRTERLSDEILSEQTC  911
              + D        W     LGP                V  +G D R+ER   ++++  T 
Sbjct  205   NDLDLFTITGTGWHFVKYLGP---------------AVVVVGPDTRSERNPHQVMAGPTY  249

Query  912   DLIWDRCHREIVRGETKHLLVLSSVPVAYPRMAMLKNILNS-------------------  952
               ++ +     +    +H + + SVP+ YPR+  +++I N+                   
Sbjct  250   QGLFPKV--ATLPPSVQHCIWMISVPLIYPRLETVEHIANTVATGKKAVTGTYNMLGKVT  307

Query  953   --------------------RKSLGKAGFFGGFVNKNGSKVEIFD---DHWTAKHHKVER  989
                                 +K++GK+G  GG ++  G +++I D   D WT +   +ER
Sbjct  308   SSVAGVVGAKEVVGSGFSSVKKAVGKSGLMGGVLSPFG-EIDILDELRDQWTHESKDLER  366

Query  990   TYLLEDLQDLAAAKSVRVTILSGDVHLAAIGQFY--SNPKLNLPKDKDYRYMPNVISSAI  1047
             TYL+  LQ +A  KS+R+T LSGDV+    G  +  S+P        D++ M  +ISSAI
Sbjct  367   TYLIRTLQGIAHQKSIRMTFLSGDVNCCGAGLVHDPSHP-------SDHKTMYQIISSAI  419

Query  1048  ADMPETEMVSDMLNKRNHVH---------HLDTNTDEDMIPIFTHDVNNKSRNNKRLLPR  1098
              + P    V  +L+    ++         +  ++T EDM+ IF  DVN + R +K+L+ R
Sbjct  420   VNAPPPSYVLKLLHNNKPLYVPQNGQRSTNQPSDTKEDMMEIFATDVNGRPREHKKLMGR  479

Query  1099  RNWCAIREYQP-------GSTPPGSPES  1119
             RN+ A   Y P       G   PG    
Sbjct  480   RNYVAFVAYDPEVVQGSFGQVAPGPQRG  507



Lambda      K        H        a         alpha
   0.314    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1844644000


Query= TCONS_00035522

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  168     9e-51
CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide...  76.9    1e-16
CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide o...  61.5    7e-13


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 168 bits (427),  Expect = 9e-51, Method: Composition-based stats.
 Identities = 77/314 (25%), Positives = 121/314 (39%), Gaps = 28/314 (9%)

Query  4    TKVVSIGSGPAAHTAAIYLSRAELKPVLYEGMLANGTAAGGQLTTTTDIENFPGFPDGIG  63
              VV IG GPA   AA+ L++   K  L E     GT   G    +  +      P+   
Sbjct  1    YDVVVIGGGPAGLAAALTLAQLGGKVTLIE---DEGTCPYGGCVLSKALLGAAEAPEIAS  57

Query  64   -GAELMENMRKQSIRFGTEVIT---ETISRVDLSSKPFKLWTEWNDGPDKEPACTADAVI  119
              A+L +   +   +    +       +  +D  +K   L              T D ++
Sbjct  58   LWADLYKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLE---ELVDGDGETITYDRLV  114

Query  120  IATGANARRLNLPGEETYWQNGISACAVCDGAVPIFRNKPLYVIGGGDSAAEEAMFLAKY  179
            IATGA  R   +PG E      +      +        K + V+GGG    E A  LAK 
Sbjct  115  IATGARPRLPPIPGVELNVGFLVRTLDSAEALRLKLLPKRVVVVGGGYIGVELAAALAKL  174

Query  180  GSSVTVLVRRDKL------RASKAMAKRLLAHPKVTVRFNTVATEVLGEKKPNGLMTHLR  233
            G  VT++   D+L        S A+ K L  +  V VR  T   E++G+           
Sbjct  175  GKEVTLIEALDRLLRAFDEEISAALEKALEKN-GVEVRLGTSVKEIIGDGD---------  224

Query  234  IKNTVTGEEEIVDANGLFYAVGHDPATALVK-GQIDLDEDGYIITKPGTSYTSREGVFAC  292
                +  +   +DA+ +  A+G  P T L++   ++LDE G I+       TS  G++A 
Sbjct  225  GVEVILKDGTEIDADLVVVAIGRRPNTELLEAAGLELDERGGIVVDEYLR-TSVPGIYAA  283

Query  293  GDVQDKRYRQAITS  306
            GD +      A  +
Sbjct  284  GDCRVGGPELAQNA  297


>CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase. 
 
Length=296

 Score = 76.9 bits (190),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 55/233 (24%), Positives = 88/233 (38%), Gaps = 43/233 (18%)

Query  76   IRFGTEVITETISRVDLSSKPFKLWTEWNDGPDKEPACTADAVIIATG--ANARRLNLPG  133
            I    EV   ++ + D     F + T       K     A  VIIATG      +L +P 
Sbjct  92   INLFEEV--TSVKKEDDG---FVVTT------SKGTY-QARYVIIATGEFDFPNKLGVP-  138

Query  134  EETYWQNGISACAVCDGAVPIFRNKPLYVIGGGDSAAEEAMFLAKYGSSVTVLVRRDKLR  193
                 +       V D     +  + + VIGG +SA + A+ L + G+ VTVL R  +  
Sbjct  139  -----ELPKHYSYVKDFH--PYAGQKVVVIGGYNSAVDAALELVRKGARVTVLYRGSEWE  191

Query  194  ASKAMAK------------RLLAHPKVTVRFNTVATEVLGEKKPNGLMTHLRIKNTVTGE  241
               +                L+ + K+   FN    E+        +   +   +T  G 
Sbjct  192  DRDSDPSYSLSPDTLNRLEELVKNGKIKAHFNAEVKEI----TEVDVSYKV---HTEDGR  244

Query  242  EEIVDANGLFYAVGHDP-ATALVKGQIDLDEDGYIITKPGTSYTSREGVFACG  293
            +   + +    A G+ P  + L KG  +LDEDG  +    T  T+  G+F  G
Sbjct  245  KVTSN-DDPILATGYHPDLSFLKKGLFELDEDGRPVLTEETESTNVPGLFLAG  296


>CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=80

 Score = 61.5 bits (150),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 22/69 (32%), Positives = 33/69 (48%), Gaps = 7/69 (10%)

Query  162  VIGGGDSAAEEAMFLAKYGSSVTVLVRRDKLR------ASKAMAKRLLAHPKVTVRFNTV  215
            V+GGG    E A  LA+ GS VTV+ RRD+L        +K + ++L  +  +    NT 
Sbjct  4    VVGGGYIGLELAGALARLGSKVTVVERRDRLLPGFDPEIAKILQEKLEKN-GIEFLLNTT  62

Query  216  ATEVLGEKK  224
               + G   
Sbjct  63   VEAIEGNGD  71



Lambda      K        H        a         alpha
   0.316    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00035523

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  172     3e-52
CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide...  76.9    1e-16
CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide o...  61.1    9e-13


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 172 bits (437),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 77/314 (25%), Positives = 122/314 (39%), Gaps = 28/314 (9%)

Query  4    TKVVIIGSGPAAHTAAIYLSRAELKPVLYEGMLANGTAAGGQLTTTTDIENFPGFPDGIG  63
              VV+IG GPA   AA+ L++   K  L E     GT   G    +  +      P+   
Sbjct  1    YDVVVIGGGPAGLAAALTLAQLGGKVTLIE---DEGTCPYGGCVLSKALLGAAEAPEIAS  57

Query  64   -GAELMENMRKQSIRFGTEVIT---ETISRVDLSSKPFKLWTEWNDGPDKEPACTADAVI  119
              A+L +   +   +    +       +  +D  +K   L              T D ++
Sbjct  58   LWADLYKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLE---ELVDGDGETITYDRLV  114

Query  120  IATGANARRLNLPGEETYWQNGISACAVCDGAVPIFRNKPLYVIGGGDSAAEEAMFLAKY  179
            IATGA  R   +PG E      +      +        K + V+GGG    E A  LAK 
Sbjct  115  IATGARPRLPPIPGVELNVGFLVRTLDSAEALRLKLLPKRVVVVGGGYIGVELAAALAKL  174

Query  180  GSSVTVLVRRDKL------RASKAMAKRLLAHPKVTVRFNTVATEVLGEKKPNGLMTHLR  233
            G  VT++   D+L        S A+ K L  +  V VR  T   E++G+           
Sbjct  175  GKEVTLIEALDRLLRAFDEEISAALEKALEKN-GVEVRLGTSVKEIIGDGD---------  224

Query  234  IKNTVTGEEEIVDANGLFYAVGHDPATALVK-GQIDLDEDGYIITKPGTSYTSREGVFAC  292
                +  +   +DA+ +  A+G  P T L++   ++LDE G I+       TS  G++A 
Sbjct  225  GVEVILKDGTEIDADLVVVAIGRRPNTELLEAAGLELDERGGIVVDEYLR-TSVPGIYAA  283

Query  293  GDVQDKRYRQAITS  306
            GD +      A  +
Sbjct  284  GDCRVGGPELAQNA  297


>CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase. 
 
Length=296

 Score = 76.9 bits (190),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 55/233 (24%), Positives = 88/233 (38%), Gaps = 43/233 (18%)

Query  76   IRFGTEVITETISRVDLSSKPFKLWTEWNDGPDKEPACTADAVIIATG--ANARRLNLPG  133
            I    EV   ++ + D     F + T       K     A  VIIATG      +L +P 
Sbjct  92   INLFEEV--TSVKKEDDG---FVVTT------SKGTY-QARYVIIATGEFDFPNKLGVP-  138

Query  134  EETYWQNGISACAVCDGAVPIFRNKPLYVIGGGDSAAEEAMFLAKYGSSVTVLVRRDKLR  193
                 +       V D     +  + + VIGG +SA + A+ L + G+ VTVL R  +  
Sbjct  139  -----ELPKHYSYVKDFH--PYAGQKVVVIGGYNSAVDAALELVRKGARVTVLYRGSEWE  191

Query  194  ASKAMAK------------RLLAHPKVTVRFNTVATEVLGEKKPNGLMTHLRIKNTVTGE  241
               +                L+ + K+   FN    E+        +   +   +T  G 
Sbjct  192  DRDSDPSYSLSPDTLNRLEELVKNGKIKAHFNAEVKEI----TEVDVSYKV---HTEDGR  244

Query  242  EEIVDANGLFYAVGHDP-ATALVKGQIDLDEDGYIITKPGTSYTSREGVFACG  293
            +   + +    A G+ P  + L KG  +LDEDG  +    T  T+  G+F  G
Sbjct  245  KVTSN-DDPILATGYHPDLSFLKKGLFELDEDGRPVLTEETESTNVPGLFLAG  296


>CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=80

 Score = 61.1 bits (149),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 22/69 (32%), Positives = 33/69 (48%), Gaps = 7/69 (10%)

Query  162  VIGGGDSAAEEAMFLAKYGSSVTVLVRRDKLR------ASKAMAKRLLAHPKVTVRFNTV  215
            V+GGG    E A  LA+ GS VTV+ RRD+L        +K + ++L  +  +    NT 
Sbjct  4    VVGGGYIGLELAGALARLGSKVTVVERRDRLLPGFDPEIAKILQEKLEKN-GIEFLLNTT  62

Query  216  ATEVLGEKK  224
               + G   
Sbjct  63   VEAIEGNGD  71



Lambda      K        H        a         alpha
   0.316    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00031383

Length=1081
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396255 pfam01593, Amino_oxidase, Flavin containing amine oxid...  247     6e-73
CDD:461307 pfam04433, SWIRM, SWIRM domain. This SWIRM domain is a...  88.8    7e-22


>CDD:396255 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase. 
 This family consists of various amine oxidases, including 
maze polyamine oxidase (PAO) and various flavin containing 
monoamine oxidases (MAO). The aligned region includes the 
flavin binding site of these enzymes. The family also contains 
phytoene dehydrogenases and related enzymes. In vertebrates 
MAO plays an important role regulating the intracellular 
levels of amines via there oxidation; these include various 
neurotransmitters, neurotoxins and trace amines. In lower eukaryotes 
such as aspergillus and in bacteria the main role 
of amine oxidases is to provide a source of ammonium. PAOs in 
plants, bacteria and protozoa oxidase spermidine and spermine 
to an aminobutyral, diaminopropane and hydrogen peroxide 
and are involved in the catabolism of polyamines. Other members 
of this family include tryptophan 2-monooxygenase, putrescine 
oxidase, corticosteroid binding proteins and antibacterial 
glycoproteins.
Length=446

 Score = 247 bits (632),  Expect = 6e-73, Method: Composition-based stats.
 Identities = 136/575 (24%), Positives = 191/575 (33%), Gaps = 137/575 (24%)

Query  308  MAGLGCARQLEGLFKQYHDPLTSPRVVVLEGRRRIGGRIYSHPLRSLQSSKLAPGVVPKA  367
            +AGL  AR+L               V VLE R R+GGRI +                   
Sbjct  1    LAGLAAARELLRA---------GHDVTVLEARDRVGGRIRTVRDDGF-----------LI  40

Query  368  EMGAQIIVGFEHGNPLDQIIRGQLALP-YHLLRDISTIYDIDGSAVDEVQDAMDERLYID  426
            E+GA    G     PL  +++ +L L    +L D +  Y +                   
Sbjct  41   ELGAMWFHG--AQPPLLALLK-ELGLEDRLVLPDPAPFYTV-------------------  78

Query  427  VLDRSGLYRHNAVIVPTAEGDRRLIDSGRDLTMSDGLTVRQYEEARAAGTVELLFPNKKV  486
            +      Y  +   VP       L++ GR L++ +                       K+
Sbjct  79   LFAGGRRYPGDFRRVPAGW--EGLLEFGRLLSIPE-----------------------KL  113

Query  487  RRGVGHKTADIKATIPPVPTDLGPAEEQPAALACQAMGWKLKDGVPPTASLNLDPVAKAS  546
            R G+    +D           L  +                         L         
Sbjct  114  RLGLAALASDALDEFDLDDFSLAESLLF----------------------LGRRGPGDVE  151

Query  547  MWPTLGAVMDEGVKQYQRMLPLTPKDMRLINWHFANLEYANATNIGKLSL----SGWDQD  602
            +W               R++             FA L +A+    G  S           
Sbjct  152  VW--------------DRLID---------PELFAALPFASGAFAGDPSELSAGLALPLL  188

Query  603  LG-NEFEGEHSQVIGGYQQVPYGLWSLPTKLDVRTNKIVSKIAYDSTGSGKRKTVVHCED  661
                   G      GG   +P  L +     DVR N  V  I  +  G       V   D
Sbjct  189  WALLGEGGSLLLPRGGLGALPDALAAQLLGGDVRLNTRVRSIDREGDG-----VTVTLTD  243

Query  662  GESFVADKVVFTASLGVLKHHSIEFSPPLPDWKRGAIERLGFGVMNKVILVFEEPFWDTE  721
            GE   AD V+ T  LGVLK   I F+PPLP  K  AI  LG+G +NKV L F+  FW   
Sbjct  244  GEVIEADAVIVTVPLGVLKR--ILFTPPLPPEKARAIRNLGYGPVNKVHLEFDRKFWPDL  301

Query  722  RDMFGLLREPKNRDSMVQEDYAANRGRFYLFWNCMKTTGLPVLIA-LMAGDAAHQAEYTP  780
              +  L        +            +  F N        +L+  +  GD A + E   
Sbjct  302  GLLGLLSELLTGLGTAFS---------WLTFPNRAPPGKGLLLLVYVGPGDRARELEGLS  352

Query  781  DGEIIAEVTSQLRNIFKHVAVPDPLETIITRWASDRFTRGSYSYVAAQALPGDYD-LMAK  839
            D E++  V   LR +F     P+PL  +++ W +D + RGSYS         DY  L   
Sbjct  353  DEELLQAVLRDLRKLFG-EEAPEPLRVLVSDWHTDPWPRGSYSLPQYGPGHDDYRPLART  411

Query  840  PVGNLHFAGEATCGTHPATVHGAYLSGLRAASEII  874
            P   L FAGE T   +P TV GA  SG RAA  ++
Sbjct  412  PDPGLFFAGEHTSTGYPGTVEGAIESGRRAARAVL  446


>CDD:461307 pfam04433, SWIRM, SWIRM domain.  This SWIRM domain is a small 
alpha-helical domain of about 85 amino acid residues found 
in chromosomal proteins. It contains a helix-turn helix motif 
and binds to DNA.
Length=78

 Score = 88.8 bits (221),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 29/79 (37%), Positives = 37/79 (47%), Gaps = 4/79 (5%)

Query  202  NPYSLHKKEQEALQDHLCH--LHVTAYLNIRNGILRLWTRNPMVSVTKDEALGCAKDYRW  259
            +P  LH  E+  L +           YL IRN IL LW  NP   +TK +A    K    
Sbjct  2    DPDKLHPIEKRLLPEFFNGKSKTPEVYLEIRNFILNLWRENPKEYLTKTDARRALKG--D  59

Query  260  MGLASFAYEWLVRNGYINF  278
            + L S  +E+L R G INF
Sbjct  60   VNLISRIHEFLERWGLINF  78



Lambda      K        H        a         alpha
   0.315    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1394637860


Query= TCONS_00035525

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  173     1e-52
CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide...  76.9    2e-16
CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide o...  60.7    1e-12


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 173 bits (441),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 78/318 (25%), Positives = 123/318 (39%), Gaps = 28/318 (9%)

Query  4    TKVVIIGSGPAAHTAAIYLSRAELKPVLYEGMLANGTAAGGQLTTTTDIENFPGFPDGIG  63
              VV+IG GPA   AA+ L++   K  L E     GT   G    +  +      P+   
Sbjct  1    YDVVVIGGGPAGLAAALTLAQLGGKVTLIE---DEGTCPYGGCVLSKALLGAAEAPEIAS  57

Query  64   -GAELMENMRKQSIRFGTEVIT---ETISRVDLSSKPFKLWTEWNDGPDKEPACTADAVI  119
              A+L +   +   +    +       +  +D  +K   L              T D ++
Sbjct  58   LWADLYKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLE---ELVDGDGETITYDRLV  114

Query  120  IATGANARRLNLPGEETYWQNGISACAVCDGAVPIFRNKPLYVIGGGDSAAEEAMFLAKY  179
            IATGA  R   +PG E      +      +        K + V+GGG    E A  LAK 
Sbjct  115  IATGARPRLPPIPGVELNVGFLVRTLDSAEALRLKLLPKRVVVVGGGYIGVELAAALAKL  174

Query  180  GSSVTVLVRRDKL------RASKAMAKRLLAHPKVTVRFNTVATEVLGEKKPNGLMTHLR  233
            G  VT++   D+L        S A+ K L  +  V VR  T   E++G+           
Sbjct  175  GKEVTLIEALDRLLRAFDEEISAALEKALEKN-GVEVRLGTSVKEIIGDGD---------  224

Query  234  IKNTVTGEEEIVDANGLFYAVGHDPATALVK-GQIDLDEDGYIITKPGTSYTSREGVFAC  292
                +  +   +DA+ +  A+G  P T L++   ++LDE G I+       TS  G++A 
Sbjct  225  GVEVILKDGTEIDADLVVVAIGRRPNTELLEAAGLELDERGGIVVDEYLR-TSVPGIYAA  283

Query  293  GDVQDKRYRQAITSAGSG  310
            GD +      A  +   G
Sbjct  284  GDCRVGGPELAQNAVAQG  301


>CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase. 
 
Length=296

 Score = 76.9 bits (190),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 55/233 (24%), Positives = 88/233 (38%), Gaps = 43/233 (18%)

Query  76   IRFGTEVITETISRVDLSSKPFKLWTEWNDGPDKEPACTADAVIIATG--ANARRLNLPG  133
            I    EV   ++ + D     F + T       K     A  VIIATG      +L +P 
Sbjct  92   INLFEEV--TSVKKEDDG---FVVTT------SKGTY-QARYVIIATGEFDFPNKLGVP-  138

Query  134  EETYWQNGISACAVCDGAVPIFRNKPLYVIGGGDSAAEEAMFLAKYGSSVTVLVRRDKLR  193
                 +       V D     +  + + VIGG +SA + A+ L + G+ VTVL R  +  
Sbjct  139  -----ELPKHYSYVKDFH--PYAGQKVVVIGGYNSAVDAALELVRKGARVTVLYRGSEWE  191

Query  194  ASKAMAK------------RLLAHPKVTVRFNTVATEVLGEKKPNGLMTHLRIKNTVTGE  241
               +                L+ + K+   FN    E+        +   +   +T  G 
Sbjct  192  DRDSDPSYSLSPDTLNRLEELVKNGKIKAHFNAEVKEI----TEVDVSYKV---HTEDGR  244

Query  242  EEIVDANGLFYAVGHDP-ATALVKGQIDLDEDGYIITKPGTSYTSREGVFACG  293
            +   + +    A G+ P  + L KG  +LDEDG  +    T  T+  G+F  G
Sbjct  245  KVTSN-DDPILATGYHPDLSFLKKGLFELDEDGRPVLTEETESTNVPGLFLAG  296


>CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=80

 Score = 60.7 bits (148),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 22/69 (32%), Positives = 33/69 (48%), Gaps = 7/69 (10%)

Query  162  VIGGGDSAAEEAMFLAKYGSSVTVLVRRDKLR------ASKAMAKRLLAHPKVTVRFNTV  215
            V+GGG    E A  LA+ GS VTV+ RRD+L        +K + ++L  +  +    NT 
Sbjct  4    VVGGGYIGLELAGALARLGSKVTVVERRDRLLPGFDPEIAKILQEKLEKN-GIEFLLNTT  62

Query  216  ATEVLGEKK  224
               + G   
Sbjct  63   VEAIEGNGD  71



Lambda      K        H        a         alpha
   0.315    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00031384

Length=1081
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396255 pfam01593, Amino_oxidase, Flavin containing amine oxid...  247     6e-73
CDD:461307 pfam04433, SWIRM, SWIRM domain. This SWIRM domain is a...  88.8    7e-22


>CDD:396255 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase. 
 This family consists of various amine oxidases, including 
maze polyamine oxidase (PAO) and various flavin containing 
monoamine oxidases (MAO). The aligned region includes the 
flavin binding site of these enzymes. The family also contains 
phytoene dehydrogenases and related enzymes. In vertebrates 
MAO plays an important role regulating the intracellular 
levels of amines via there oxidation; these include various 
neurotransmitters, neurotoxins and trace amines. In lower eukaryotes 
such as aspergillus and in bacteria the main role 
of amine oxidases is to provide a source of ammonium. PAOs in 
plants, bacteria and protozoa oxidase spermidine and spermine 
to an aminobutyral, diaminopropane and hydrogen peroxide 
and are involved in the catabolism of polyamines. Other members 
of this family include tryptophan 2-monooxygenase, putrescine 
oxidase, corticosteroid binding proteins and antibacterial 
glycoproteins.
Length=446

 Score = 247 bits (632),  Expect = 6e-73, Method: Composition-based stats.
 Identities = 136/575 (24%), Positives = 191/575 (33%), Gaps = 137/575 (24%)

Query  308  MAGLGCARQLEGLFKQYHDPLTSPRVVVLEGRRRIGGRIYSHPLRSLQSSKLAPGVVPKA  367
            +AGL  AR+L               V VLE R R+GGRI +                   
Sbjct  1    LAGLAAARELLRA---------GHDVTVLEARDRVGGRIRTVRDDGF-----------LI  40

Query  368  EMGAQIIVGFEHGNPLDQIIRGQLALP-YHLLRDISTIYDIDGSAVDEVQDAMDERLYID  426
            E+GA    G     PL  +++ +L L    +L D +  Y +                   
Sbjct  41   ELGAMWFHG--AQPPLLALLK-ELGLEDRLVLPDPAPFYTV-------------------  78

Query  427  VLDRSGLYRHNAVIVPTAEGDRRLIDSGRDLTMSDGLTVRQYEEARAAGTVELLFPNKKV  486
            +      Y  +   VP       L++ GR L++ +                       K+
Sbjct  79   LFAGGRRYPGDFRRVPAGW--EGLLEFGRLLSIPE-----------------------KL  113

Query  487  RRGVGHKTADIKATIPPVPTDLGPAEEQPAALACQAMGWKLKDGVPPTASLNLDPVAKAS  546
            R G+    +D           L  +                         L         
Sbjct  114  RLGLAALASDALDEFDLDDFSLAESLLF----------------------LGRRGPGDVE  151

Query  547  MWPTLGAVMDEGVKQYQRMLPLTPKDMRLINWHFANLEYANATNIGKLSL----SGWDQD  602
            +W               R++             FA L +A+    G  S           
Sbjct  152  VW--------------DRLID---------PELFAALPFASGAFAGDPSELSAGLALPLL  188

Query  603  LG-NEFEGEHSQVIGGYQQVPYGLWSLPTKLDVRTNKIVSKIAYDSTGSGKRKTVVHCED  661
                   G      GG   +P  L +     DVR N  V  I  +  G       V   D
Sbjct  189  WALLGEGGSLLLPRGGLGALPDALAAQLLGGDVRLNTRVRSIDREGDG-----VTVTLTD  243

Query  662  GESFVADKVVFTASLGVLKHHSIEFSPPLPDWKRGAIERLGFGVMNKVILVFEEPFWDTE  721
            GE   AD V+ T  LGVLK   I F+PPLP  K  AI  LG+G +NKV L F+  FW   
Sbjct  244  GEVIEADAVIVTVPLGVLKR--ILFTPPLPPEKARAIRNLGYGPVNKVHLEFDRKFWPDL  301

Query  722  RDMFGLLREPKNRDSMVQEDYAANRGRFYLFWNCMKTTGLPVLIA-LMAGDAAHQAEYTP  780
              +  L        +            +  F N        +L+  +  GD A + E   
Sbjct  302  GLLGLLSELLTGLGTAFS---------WLTFPNRAPPGKGLLLLVYVGPGDRARELEGLS  352

Query  781  DGEIIAEVTSQLRNIFKHVAVPDPLETIITRWASDRFTRGSYSYVAAQALPGDYD-LMAK  839
            D E++  V   LR +F     P+PL  +++ W +D + RGSYS         DY  L   
Sbjct  353  DEELLQAVLRDLRKLFG-EEAPEPLRVLVSDWHTDPWPRGSYSLPQYGPGHDDYRPLART  411

Query  840  PVGNLHFAGEATCGTHPATVHGAYLSGLRAASEII  874
            P   L FAGE T   +P TV GA  SG RAA  ++
Sbjct  412  PDPGLFFAGEHTSTGYPGTVEGAIESGRRAARAVL  446


>CDD:461307 pfam04433, SWIRM, SWIRM domain.  This SWIRM domain is a small 
alpha-helical domain of about 85 amino acid residues found 
in chromosomal proteins. It contains a helix-turn helix motif 
and binds to DNA.
Length=78

 Score = 88.8 bits (221),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 29/79 (37%), Positives = 37/79 (47%), Gaps = 4/79 (5%)

Query  202  NPYSLHKKEQEALQDHLCH--LHVTAYLNIRNGILRLWTRNPMVSVTKDEALGCAKDYRW  259
            +P  LH  E+  L +           YL IRN IL LW  NP   +TK +A    K    
Sbjct  2    DPDKLHPIEKRLLPEFFNGKSKTPEVYLEIRNFILNLWRENPKEYLTKTDARRALKG--D  59

Query  260  MGLASFAYEWLVRNGYINF  278
            + L S  +E+L R G INF
Sbjct  60   VNLISRIHEFLERWGLINF  78



Lambda      K        H        a         alpha
   0.315    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1394637860


Query= TCONS_00031386

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  172     3e-52
CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide...  76.9    1e-16
CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide o...  61.1    9e-13


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 172 bits (437),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 77/314 (25%), Positives = 122/314 (39%), Gaps = 28/314 (9%)

Query  4    TKVVIIGSGPAAHTAAIYLSRAELKPVLYEGMLANGTAAGGQLTTTTDIENFPGFPDGIG  63
              VV+IG GPA   AA+ L++   K  L E     GT   G    +  +      P+   
Sbjct  1    YDVVVIGGGPAGLAAALTLAQLGGKVTLIE---DEGTCPYGGCVLSKALLGAAEAPEIAS  57

Query  64   -GAELMENMRKQSIRFGTEVIT---ETISRVDLSSKPFKLWTEWNDGPDKEPACTADAVI  119
              A+L +   +   +    +       +  +D  +K   L              T D ++
Sbjct  58   LWADLYKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLE---ELVDGDGETITYDRLV  114

Query  120  IATGANARRLNLPGEETYWQNGISACAVCDGAVPIFRNKPLYVIGGGDSAAEEAMFLAKY  179
            IATGA  R   +PG E      +      +        K + V+GGG    E A  LAK 
Sbjct  115  IATGARPRLPPIPGVELNVGFLVRTLDSAEALRLKLLPKRVVVVGGGYIGVELAAALAKL  174

Query  180  GSSVTVLVRRDKL------RASKAMAKRLLAHPKVTVRFNTVATEVLGEKKPNGLMTHLR  233
            G  VT++   D+L        S A+ K L  +  V VR  T   E++G+           
Sbjct  175  GKEVTLIEALDRLLRAFDEEISAALEKALEKN-GVEVRLGTSVKEIIGDGD---------  224

Query  234  IKNTVTGEEEIVDANGLFYAVGHDPATALVK-GQIDLDEDGYIITKPGTSYTSREGVFAC  292
                +  +   +DA+ +  A+G  P T L++   ++LDE G I+       TS  G++A 
Sbjct  225  GVEVILKDGTEIDADLVVVAIGRRPNTELLEAAGLELDERGGIVVDEYLR-TSVPGIYAA  283

Query  293  GDVQDKRYRQAITS  306
            GD +      A  +
Sbjct  284  GDCRVGGPELAQNA  297


>CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase. 
 
Length=296

 Score = 76.9 bits (190),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 55/233 (24%), Positives = 88/233 (38%), Gaps = 43/233 (18%)

Query  76   IRFGTEVITETISRVDLSSKPFKLWTEWNDGPDKEPACTADAVIIATG--ANARRLNLPG  133
            I    EV   ++ + D     F + T       K     A  VIIATG      +L +P 
Sbjct  92   INLFEEV--TSVKKEDDG---FVVTT------SKGTY-QARYVIIATGEFDFPNKLGVP-  138

Query  134  EETYWQNGISACAVCDGAVPIFRNKPLYVIGGGDSAAEEAMFLAKYGSSVTVLVRRDKLR  193
                 +       V D     +  + + VIGG +SA + A+ L + G+ VTVL R  +  
Sbjct  139  -----ELPKHYSYVKDFH--PYAGQKVVVIGGYNSAVDAALELVRKGARVTVLYRGSEWE  191

Query  194  ASKAMAK------------RLLAHPKVTVRFNTVATEVLGEKKPNGLMTHLRIKNTVTGE  241
               +                L+ + K+   FN    E+        +   +   +T  G 
Sbjct  192  DRDSDPSYSLSPDTLNRLEELVKNGKIKAHFNAEVKEI----TEVDVSYKV---HTEDGR  244

Query  242  EEIVDANGLFYAVGHDP-ATALVKGQIDLDEDGYIITKPGTSYTSREGVFACG  293
            +   + +    A G+ P  + L KG  +LDEDG  +    T  T+  G+F  G
Sbjct  245  KVTSN-DDPILATGYHPDLSFLKKGLFELDEDGRPVLTEETESTNVPGLFLAG  296


>CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=80

 Score = 61.1 bits (149),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 22/69 (32%), Positives = 33/69 (48%), Gaps = 7/69 (10%)

Query  162  VIGGGDSAAEEAMFLAKYGSSVTVLVRRDKLR------ASKAMAKRLLAHPKVTVRFNTV  215
            V+GGG    E A  LA+ GS VTV+ RRD+L        +K + ++L  +  +    NT 
Sbjct  4    VVGGGYIGLELAGALARLGSKVTVVERRDRLLPGFDPEIAKILQEKLEKN-GIEFLLNTT  62

Query  216  ATEVLGEKK  224
               + G   
Sbjct  63   VEAIEGNGD  71



Lambda      K        H        a         alpha
   0.316    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 353561196


Query= TCONS_00035526

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  83.5    7e-21


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 83.5 bits (207),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 51/136 (38%), Gaps = 10/136 (7%)

Query  4    TKVVIIGSGPAAHTAAIYLSRAELKPVLYEGMLANGTAAGGQLTTTTDIENFPGFPDGIG  63
              VV+IG GPA   AA+ L++   K  L E     GT   G    +  +      P+   
Sbjct  1    YDVVVIGGGPAGLAAALTLAQLGGKVTLIE---DEGTCPYGGCVLSKALLGAAEAPEIAS  57

Query  64   -GAELMENMRKQSIRFGTEVIT---ETISRVDLSSKPFKLWTEWNDGPDKEPACTADAVI  119
              A+L +   +   +    +       +  +D  +K   L              T D ++
Sbjct  58   LWADLYKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVL---EELVDGDGETITYDRLV  114

Query  120  IATGANARRLNLPGEE  135
            IATGA  R   +PG E
Sbjct  115  IATGARPRLPPIPGVE  130



Lambda      K        H        a         alpha
   0.314    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00031387

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  172     1e-51
CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide...  77.6    1e-16
CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide o...  62.6    4e-13


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 172 bits (439),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 77/315 (24%), Positives = 122/315 (39%), Gaps = 28/315 (9%)

Query  26   IVIGSGPAAHTAAIYLSRAELKPVLYEGMLANGTAAGGQLTTTTDIENFPGFPDGIG-GA  84
            +VIG GPA   AA+ L++   K  L E     GT   G    +  +      P+     A
Sbjct  4    VVIGGGPAGLAAALTLAQLGGKVTLIE---DEGTCPYGGCVLSKALLGAAEAPEIASLWA  60

Query  85   ELMENMRKQSIRFGTEVIT---ETISRVDLSSKPFKLWTEWNDGPDKEPACTADAVIIAT  141
            +L +   +   +    +       +  +D  +K   L              T D ++IAT
Sbjct  61   DLYKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLE---ELVDGDGETITYDRLVIAT  117

Query  142  GANARRLNLPGEETYWQNGISACAVCDGAVPIFRNKPLYVIGGGDSAAEEAMFLAKYGSS  201
            GA  R   +PG E      +      +        K + V+GGG    E A  LAK G  
Sbjct  118  GARPRLPPIPGVELNVGFLVRTLDSAEALRLKLLPKRVVVVGGGYIGVELAAALAKLGKE  177

Query  202  VTVLVRRDKL------RASKAMAKRLLAHPKVTVRFNTVATEVLGEKKPNGLMTHLRIKN  255
            VT++   D+L        S A+ K L  +  V VR  T   E++G+              
Sbjct  178  VTLIEALDRLLRAFDEEISAALEKALEKN-GVEVRLGTSVKEIIGDGD---------GVE  227

Query  256  TVTGEEEIVDANGLFYAVGHDPATALVK-GQIDLDEDGYIITKPGTSYTSREGVFACGDV  314
             +  +   +DA+ +  A+G  P T L++   ++LDE G I+       TS  G++A GD 
Sbjct  228  VILKDGTEIDADLVVVAIGRRPNTELLEAAGLELDERGGIVVDEYLR-TSVPGIYAAGDC  286

Query  315  QDKRYRQAITSAGSG  329
            +      A  +   G
Sbjct  287  RVGGPELAQNAVAQG  301


>CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase. 
 
Length=296

 Score = 77.6 bits (192),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 55/233 (24%), Positives = 88/233 (38%), Gaps = 43/233 (18%)

Query  95   IRFGTEVITETISRVDLSSKPFKLWTEWNDGPDKEPACTADAVIIATG--ANARRLNLPG  152
            I    EV   ++ + D     F + T       K     A  VIIATG      +L +P 
Sbjct  92   INLFEEV--TSVKKEDDG---FVVTT------SKGTY-QARYVIIATGEFDFPNKLGVP-  138

Query  153  EETYWQNGISACAVCDGAVPIFRNKPLYVIGGGDSAAEEAMFLAKYGSSVTVLVRRDKLR  212
                 +       V D     +  + + VIGG +SA + A+ L + G+ VTVL R  +  
Sbjct  139  -----ELPKHYSYVKDFH--PYAGQKVVVIGGYNSAVDAALELVRKGARVTVLYRGSEWE  191

Query  213  ASKAMAK------------RLLAHPKVTVRFNTVATEVLGEKKPNGLMTHLRIKNTVTGE  260
               +                L+ + K+   FN    E+        +   +   +T  G 
Sbjct  192  DRDSDPSYSLSPDTLNRLEELVKNGKIKAHFNAEVKEI----TEVDVSYKV---HTEDGR  244

Query  261  EEIVDANGLFYAVGHDP-ATALVKGQIDLDEDGYIITKPGTSYTSREGVFACG  312
            +   + +    A G+ P  + L KG  +LDEDG  +    T  T+  G+F  G
Sbjct  245  KVTSN-DDPILATGYHPDLSFLKKGLFELDEDGRPVLTEETESTNVPGLFLAG  296


>CDD:425450 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=80

 Score = 62.6 bits (153),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 22/69 (32%), Positives = 33/69 (48%), Gaps = 7/69 (10%)

Query  181  VIGGGDSAAEEAMFLAKYGSSVTVLVRRDKLR------ASKAMAKRLLAHPKVTVRFNTV  234
            V+GGG    E A  LA+ GS VTV+ RRD+L        +K + ++L  +  +    NT 
Sbjct  4    VVGGGYIGLELAGALARLGSKVTVVERRDRLLPGFDPEIAKILQEKLEKN-GIEFLLNTT  62

Query  235  ATEVLGEKK  243
               + G   
Sbjct  63   VEAIEGNGD  71



Lambda      K        H        a         alpha
   0.315    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470662626


Query= TCONS_00035527

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00031388

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00035528

Length=106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461151 pfam04061, ORMDL, ORMDL family. Evidence form suggests...  153     2e-50


>CDD:461151 pfam04061, ORMDL, ORMDL family.  Evidence form suggests that 
ORMDLs are involved in protein folding in the ER. Orm proteins 
have been identified as negative regulators of sphingolipid 
synthesis that form a conserved complex with serine palmitoyltransferase, 
the first and rate-limiting enzyme in sphingolipid 
production. This novel and conserved protein complex, 
has been termed the SPOTS complex (serine palmitoyltransferase, 
Orm1/2, Tsc3, and Sac1).
Length=135

 Score = 153 bits (390),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 64/84 (76%), Positives = 70/84 (83%), Gaps = 0/84 (0%)

Query  1    MFGSFIMFHWVRGIPFEFNAGAYDNLNMWEQIDNGDQYTPTKKFLLCVPICLFLLSTHYT  60
              G+FIMFHW++G PFEF+ GAYDNL  WEQIDNG QYTPT+KFL  VPI LFLLSTHYT
Sbjct  47   NIGTFIMFHWIKGTPFEFDQGAYDNLTFWEQIDNGAQYTPTRKFLTLVPIVLFLLSTHYT  106

Query  61   HYDLTYFTINFLATLGVVIPKLPF  84
            HYDLT F INF+A L VVIPKLPF
Sbjct  107  HYDLTLFIINFIALLVVVIPKLPF  130



Lambda      K        H        a         alpha
   0.332    0.147    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00031453

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00031454

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00035558

Length=1112


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1417181570


Query= TCONS_00031456

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00031455

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00031389

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00031390

Length=733
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462528 pfam08590, DUF1771, Domain of unknown function (DUF177...  81.0    1e-19


>CDD:462528 pfam08590, DUF1771, Domain of unknown function (DUF1771).  This 
domain is always found adjacent to pfam01713.
Length=62

 Score = 81.0 bits (201),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 26/62 (42%), Positives = 37/62 (60%), Gaps = 0/62 (0%)

Query  526  KYRTEAIRHGTVRNKFLQSAAQAWNRNDARAAKALSLRGQAENEAMRRCHREAARQLYEE  585
            + R EA +H   RN+  Q AA+A+ R D  AAK LS +G+   E M   +R+AA  ++EE
Sbjct  1    RLRAEARKHARKRNELFQKAAEAYRRGDGAAAKELSEQGKEHGEKMEEANRQAAEAIFEE  60

Query  586  RN  587
             N
Sbjct  61   NN  62



Lambda      K        H        a         alpha
   0.311    0.128    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 929842128


Query= TCONS_00031391

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00031392

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00031393

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461754 pfam05832, DUF846, Eukaryotic protein of unknown funct...  166     9e-54


>CDD:461754 pfam05832, DUF846, Eukaryotic protein of unknown function (DUF846). 
 This family consists of several of unknown function 
from a variety of eukaryotic organisms.
Length=139

 Score = 166 bits (422),  Expect = 9e-54, Method: Composition-based stats.
 Identities = 79/142 (56%), Positives = 102/142 (72%), Gaps = 3/142 (2%)

Query  18   AHPITLLFFLGFRTSALLMYLFGVLFIKNFVLVFILTLLLLSADFYYLKNIAGRRLVGLR  77
            +HP+ L F L F+ +A+L+YLFG LF  NF+L+FI+ +LLL+ DF+ +KNI GR LVGLR
Sbjct  1    SHPVALFFHLFFKIAAILVYLFGGLFSSNFILIFIIVILLLALDFWTVKNITGRLLVGLR  60

Query  78   WWNEVNTATGDSHWVFESSDPATRTISATDKRFFWLSLYVTPALWIGLAVLAIVRLSSVI  137
            WWNEV+   G+S WVFES DP  R ++A D + FWLSLYVTP +WI L ++AI+ L    
Sbjct  61   WWNEVD-EDGESTWVFESRDP-KRPVNAIDSKLFWLSLYVTPLIWILLLIVAIISL-KFF  117

Query  138  WLSLVAIALVLTITNTVAFSRC  159
            WL LV IALVL  TN   F +C
Sbjct  118  WLLLVIIALVLNGTNLYGFYKC  139



Lambda      K        H        a         alpha
   0.329    0.140    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00035530

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461754 pfam05832, DUF846, Eukaryotic protein of unknown funct...  156     6e-50


>CDD:461754 pfam05832, DUF846, Eukaryotic protein of unknown function (DUF846). 
 This family consists of several of unknown function 
from a variety of eukaryotic organisms.
Length=139

 Score = 156 bits (397),  Expect = 6e-50, Method: Composition-based stats.
 Identities = 74/142 (52%), Positives = 98/142 (69%), Gaps = 3/142 (2%)

Query  18   AHPITLLFFLGFRTSALLMYLFGVLFIKNFVLVFILTLLLLSADFYYLKNIAGRRLVGLR  77
            +HP+ L F L F+ +A+L+YLFG LF  NF+L+FI+ +LLL+ DF+ +KNI GR LVGLR
Sbjct  1    SHPVALFFHLFFKIAAILVYLFGGLFSSNFILIFIIVILLLALDFWTVKNITGRLLVGLR  60

Query  78   WWNEVNTATGDSHWVFESSDPATRTISATDKRFFWLSLYVTPALWIGLAVLAIVRLSSVI  137
            WWNEV+   G+S WVFES DP  R ++A D + FWLSLYVTP +WI L ++AI+ L    
Sbjct  61   WWNEVD-EDGESTWVFESRDP-KRPVNAIDSKLFWLSLYVTPLIWILLLIVAIISL-KFF  117

Query  138  WLSLVGESSYATITNTVAFSRC  159
            WL LV  +     TN   F +C
Sbjct  118  WLLLVIIALVLNGTNLYGFYKC  139



Lambda      K        H        a         alpha
   0.328    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00035529

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461754 pfam05832, DUF846, Eukaryotic protein of unknown funct...  145     5e-46


>CDD:461754 pfam05832, DUF846, Eukaryotic protein of unknown function (DUF846). 
 This family consists of several of unknown function 
from a variety of eukaryotic organisms.
Length=139

 Score = 145 bits (367),  Expect = 5e-46, Method: Composition-based stats.
 Identities = 66/115 (57%), Positives = 88/115 (77%), Gaps = 2/115 (2%)

Query  18   AHPITLLFFLGFRTSALLMYLFGVLFIKNFVLVFILTLLLLSADFYYLKNIAGRRLVGLR  77
            +HP+ L F L F+ +A+L+YLFG LF  NF+L+FI+ +LLL+ DF+ +KNI GR LVGLR
Sbjct  1    SHPVALFFHLFFKIAAILVYLFGGLFSSNFILIFIIVILLLALDFWTVKNITGRLLVGLR  60

Query  78   WWNEVNTATGDSHWVFESSDPATRTISATDKRFFWLSLYVTPALWIGLAVLAIVS  132
            WWNEV+   G+S WVFES DP  R ++A D + FWLSLYVTP +WI L ++AI+S
Sbjct  61   WWNEVD-EDGESTWVFESRDP-KRPVNAIDSKLFWLSLYVTPLIWILLLIVAIIS  113



Lambda      K        H        a         alpha
   0.330    0.142    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00031394

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461754 pfam05832, DUF846, Eukaryotic protein of unknown funct...  162     3e-52


>CDD:461754 pfam05832, DUF846, Eukaryotic protein of unknown function (DUF846). 
 This family consists of several of unknown function 
from a variety of eukaryotic organisms.
Length=139

 Score = 162 bits (412),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 77/142 (54%), Positives = 101/142 (71%), Gaps = 3/142 (2%)

Query  18   AHPITLLFFLGFRTSALLMYLFGVLFIKNFVLVFILTLLLLSADFYYLKNIAGRRLVGLR  77
            +HP+ L F L F+ +A+L+YLFG LF  NF+L+FI+ +LLL+ DF+ +KNI GR LVGLR
Sbjct  1    SHPVALFFHLFFKIAAILVYLFGGLFSSNFILIFIIVILLLALDFWTVKNITGRLLVGLR  60

Query  78   WWNEVNTATGDSHWVFESSDPATRTISATDKRFFWLSLYVTPALWIGLAVLAIVRLSSVI  137
            WWNEV+   G+S WVFES DP  R ++A D + FWLSLYVTP +WI L ++AI+ L    
Sbjct  61   WWNEVD-EDGESTWVFESRDP-KRPVNAIDSKLFWLSLYVTPLIWILLLIVAIISL-KFF  117

Query  138  WLSLVGESLVLTITNTVAFSRC  159
            WL LV  +LVL  TN   F +C
Sbjct  118  WLLLVIIALVLNGTNLYGFYKC  139



Lambda      K        H        a         alpha
   0.328    0.140    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00035531

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461754 pfam05832, DUF846, Eukaryotic protein of unknown funct...  161     8e-52


>CDD:461754 pfam05832, DUF846, Eukaryotic protein of unknown function (DUF846). 
 This family consists of several of unknown function 
from a variety of eukaryotic organisms.
Length=139

 Score = 161 bits (409),  Expect = 8e-52, Method: Composition-based stats.
 Identities = 78/142 (55%), Positives = 100/142 (70%), Gaps = 3/142 (2%)

Query  18   AHPITLLFFLGFRTSALLMYLFGVLFIKNLYLVFILTLLLLSADFYYLKNIAGRRLVGLR  77
            +HP+ L F L F+ +A+L+YLFG LF  N  L+FI+ +LLL+ DF+ +KNI GR LVGLR
Sbjct  1    SHPVALFFHLFFKIAAILVYLFGGLFSSNFILIFIIVILLLALDFWTVKNITGRLLVGLR  60

Query  78   WWNEVNTATGDSHWVFESSDPATRTISATDKRFFWLSLYVTPALWIGLAVLAIVRLSSVI  137
            WWNEV+   G+S WVFES DP  R ++A D + FWLSLYVTP +WI L ++AI+ L    
Sbjct  61   WWNEVD-EDGESTWVFESRDP-KRPVNAIDSKLFWLSLYVTPLIWILLLIVAIISL-KFF  117

Query  138  WLSLVAIALVLTITNTVAFSRC  159
            WL LV IALVL  TN   F +C
Sbjct  118  WLLLVIIALVLNGTNLYGFYKC  139



Lambda      K        H        a         alpha
   0.329    0.140    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00031395

Length=161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461754 pfam05832, DUF846, Eukaryotic protein of unknown funct...  148     3e-47


>CDD:461754 pfam05832, DUF846, Eukaryotic protein of unknown function (DUF846). 
 This family consists of several of unknown function 
from a variety of eukaryotic organisms.
Length=139

 Score = 148 bits (376),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 70/126 (56%), Positives = 92/126 (73%), Gaps = 3/126 (2%)

Query  18   AHPITLLFFLGFRTSALLMYLFGVLFIKNFVLVFILTLLLLSADFYYLKNIAGRRLVGLR  77
            +HP+ L F L F+ +A+L+YLFG LF  NF+L+FI+ +LLL+ DF+ +KNI GR LVGLR
Sbjct  1    SHPVALFFHLFFKIAAILVYLFGGLFSSNFILIFIIVILLLALDFWTVKNITGRLLVGLR  60

Query  78   WWNEVNTATGDSHWVFESSDPATRTISATDKRFFWLSLYVTPALWIGLAVLAIVRLSSVI  137
            WWNEV+   G+S WVFES DP  R ++A D + FWLSLYVTP +WI L ++AI+ L    
Sbjct  61   WWNEVD-EDGESTWVFESRDP-KRPVNAIDSKLFWLSLYVTPLIWILLLIVAIISL-KFF  117

Query  138  WLSLVG  143
            WL LV 
Sbjct  118  WLLLVI  123



Lambda      K        H        a         alpha
   0.328    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00035532

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.146    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00031398

Length=453


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 556734552


Query= TCONS_00031397

Length=407


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00031396

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00035533

Length=420


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00035534

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00031399

Length=499


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.127    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 617738928


Query= TCONS_00035535

Length=407


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00031401

Length=407


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00035536

Length=468


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 579740112


Query= TCONS_00031400

Length=484


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595027938


Query= TCONS_00035537

Length=420


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00031402

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00031404

Length=497


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 614710796


Query= TCONS_00031403

Length=516


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00035538

Length=288


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00035540

Length=405


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00035541

Length=308


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00035539

Length=509


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 632879588


Query= TCONS_00031406

Length=247


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00031405

Length=247


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00035542

Length=417


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00031407

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00031408

Length=516


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00031410

Length=490


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 604112334


Query= TCONS_00031411

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00031412

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00031413

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00035543

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0820    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00031414

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  64.8    8e-13


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 64.8 bits (158),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 59/251 (24%), Positives = 101/251 (40%), Gaps = 18/251 (7%)

Query  15   PVLIIHGWKMEARVEELDFEPIFSTIPGLR-RIYV-DLPGMG-TTPAKNVKDL-DDIYLR  70
            PVL++HG    + +    +  +   +     R+   DL G G ++  K   D   D    
Sbjct  2    PVLLLHGLPGSSDL----WRKLAPALARDGFRVIALDLRGFGKSSRPKAQDDYRTDDLAE  57

Query  71   LVQFIDSRLGKSRFLLVGSSCGGYLARAIAQKYSNQVDGLLLRVPL---IEPKDSMRDLD  127
             +++I   LG  +  LVG S GG +A A A KY ++V  L+L   L    E  ++ R + 
Sbjct  58   DLEYILEALGLEKVNLVGHSMGGLIALAYAAKYPDRVKALVLLGALDPPHELDEADRFIL  117

Query  128  AFKPLVANEQLMSDMSAEDKTLLGDVLVQTPAYVKTLKAKYD-EVYLPAEKKADSQVLDP  186
            A  P   +  +          L+  +L      ++ LKA        P+   A ++ L  
Sbjct  118  ALFPGFFDGFVADFAPNPLGRLVAKLLALLLLRLRLLKALPLLNKRFPSGDYALAKSLV-  176

Query  187  IRADPHRYQLSFSVDNEGAKFFA---PTLIICGRQDESVGYRDSLRLLELYPRSTYVVLD  243
                   +  ++S +           PTLII G QD  V  +   +L +L+P +  VV+ 
Sbjct  177  --TGALLFIETWSTELRAKFLGRLDEPTLIIWGDQDPLVPPQALEKLAQLFPNARLVVIP  234

Query  244  RGTHGLPIDET  254
               H   ++  
Sbjct  235  DAGHFAFLEGP  245



Lambda      K        H        a         alpha
   0.320    0.139    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00031415

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. T...  64.8    8e-13


>CDD:395444 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=245

 Score = 64.8 bits (158),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 59/251 (24%), Positives = 101/251 (40%), Gaps = 18/251 (7%)

Query  15   PVLIIHGWKMEARVEELDFEPIFSTIPGLR-RIYV-DLPGMG-TTPAKNVKDL-DDIYLR  70
            PVL++HG    + +    +  +   +     R+   DL G G ++  K   D   D    
Sbjct  2    PVLLLHGLPGSSDL----WRKLAPALARDGFRVIALDLRGFGKSSRPKAQDDYRTDDLAE  57

Query  71   LVQFIDSRLGKSRFLLVGSSCGGYLARAIAQKYSNQVDGLLLRVPL---IEPKDSMRDLD  127
             +++I   LG  +  LVG S GG +A A A KY ++V  L+L   L    E  ++ R + 
Sbjct  58   DLEYILEALGLEKVNLVGHSMGGLIALAYAAKYPDRVKALVLLGALDPPHELDEADRFIL  117

Query  128  AFKPLVANEQLMSDMSAEDKTLLGDVLVQTPAYVKTLKAKYD-EVYLPAEKKADSQVLDP  186
            A  P   +  +          L+  +L      ++ LKA        P+   A ++ L  
Sbjct  118  ALFPGFFDGFVADFAPNPLGRLVAKLLALLLLRLRLLKALPLLNKRFPSGDYALAKSLV-  176

Query  187  IRADPHRYQLSFSVDNEGAKFFA---PTLIICGRQDESVGYRDSLRLLELYPRSTYVVLD  243
                   +  ++S +           PTLII G QD  V  +   +L +L+P +  VV+ 
Sbjct  177  --TGALLFIETWSTELRAKFLGRLDEPTLIIWGDQDPLVPPQALEKLAQLFPNARLVVIP  234

Query  244  RGTHGLPIDET  254
               H   ++  
Sbjct  235  DAGHFAFLEGP  245



Lambda      K        H        a         alpha
   0.320    0.139    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00035544

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         259     4e-83


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 259 bits (665),  Expect = 4e-83, Method: Composition-based stats.
 Identities = 126/340 (37%), Positives = 192/340 (56%), Gaps = 11/340 (3%)

Query  3    TSTVPTWQSECCRSNRRGQMVMIEGAMITCGITISYWIDFGLLFADPNEVAWRFPLAFQI  62
            +   P + SE      RG +  +    IT GI ++Y    GL     N   WR PL  Q+
Sbjct  120  SVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTS-NSDGWRIPLGLQL  178

Query  63   FFAAIILAFVMWLPESPRWLVLKGREDEARQTLTALLGHDADETFVDTEFTAIKATVLEM  122
              A +++  +++LPESPRWLV KGR +EAR+ L  L G    +  +D    +++A   E 
Sbjct  179  VPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQ-EA  237

Query  123  SKGSFRDMFTMTEDRHFHRTVLAYVNQMFQQISGINLITYYIPVVLEQQLGMDMIKSRLV  182
             K S++++F+    R   R ++  + Q+FQQ++GIN I YY   + E  LG+    S LV
Sbjct  238  EKASWKELFSTKTRRQ--RLLIGVMLQIFQQLTGINAIFYYSTTIFEN-LGLS--DSFLV  292

Query  183  AACNGTEYFIASWIAVFTIEQFGRRSLMLFGAAGMSISMVILAVTASLGTDASKVA---C  239
                G   F+ ++IA+F +++FGRR L+L GAAGM+I  VIL + A LG   S  A    
Sbjct  293  TIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVA  352

Query  240  AVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWIFNFMVVMITPVAFEN  299
             VF+ +F  FFA+GW  + W+  +E+ PL +R+ A ALAT++NW+ NF++  + P+  + 
Sbjct  353  IVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDA  412

Query  300  IKWR-TYIIFAVINAAIFPVVYFFYPETTRRSLEEMDRIF  338
            I    T+ IFA +       V+FF PET  R+LEE+D +F
Sbjct  413  IGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.326    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00031416

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            88.6    1e-19


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 88.6 bits (220),  Expect = 1e-19, Method: Composition-based stats.
 Identities = 70/373 (19%), Positives = 130/373 (35%), Gaps = 50/373 (13%)

Query  59   FWVLYFLCSAIRSNVGLAQTMNMDVGHDLGSVLHLTPHQISTGLALFYVCYVVFDLPSNL  118
             ++  FL +  RS +G A      +   L   L ++P +I   L LF + Y +    +  
Sbjct  1    LFLAAFLAALGRSLLGPA------LPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGR  54

Query  119  VMTRLSPHVWMSRIVISVGIIGSCMAAMKAAWSLYLLRLLLGIFIAGMWPGMTYYLTLFY  178
            +  R      +   ++   +    +    + W L +LR+L G+    ++P     +  ++
Sbjct  55   LSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWF  114

Query  179  PPSRTGKRIGQYFTAAQISAAVVGLVSAGFQKMDGERGLVGFQWMFLVYGIITIAVGIVL  238
            PP   G+ +G       + AA+  L+            L G++  FL+  I+++   +  
Sbjct  115  PPEERGRALGLVSAGFGLGAALGPLLGGLLA------SLFGWRAAFLILAILSLLAAV--  166

Query  239  LWWLPDRPLAPGVEPPQRKYFKWLQRSPPALTGRDAEIHYHDLRRVYHRPQWSVRDLLRV  298
            L  LP  P       P  +    L                             +     +
Sbjct  167  LLLLPRPPPESKRPKPAEEARLSL-----------------------------IVAWKAL  197

Query  299  FLDWRLWPLLVMYFGVVGVGIGVQNYAT-VIIRGINPSLNGIDLSLLTAPIWLMDLLGIL  357
              D  LW LL +          +        + G++  L G+ L L      L+  +G L
Sbjct  198  LRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLG----GLLGAIGRL  253

Query  358  LVTPFSDRFHKHRALFFSFPVCLQILGLLLTTFAGSASNSWPRYGGLLIVGFGLGPTVPI  417
            L+   SDR  + R L  +  +   IL  L         +S      LL++GFG G   P 
Sbjct  254  LLGRLSDRLGRRRRLLLALLLL--ILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPA  311

Query  418  TMSWTAEVFQPRH  430
              +  +++     
Sbjct  312  LNALVSDLAPKEE  324



Lambda      K        H        a         alpha
   0.326    0.141    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 666189040


Query= TCONS_00035545

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         333     8e-110
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            66.3    2e-12 


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 333 bits (856),  Expect = 8e-110, Method: Composition-based stats.
 Identities = 166/466 (36%), Positives = 258/466 (55%), Gaps = 23/466 (5%)

Query  20   IIAGMDFLLFGYDQGVTGGLLTLESFIKYFPTIALNGPYFESLSPSERSAQSTRQGIVVA  79
            ++A +   LFGYD GV G  LTL  F K F                     S   G++V+
Sbjct  3    LVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAAL---------SVLSGLIVS  53

Query  80   AYNLGCFAGSIPTIWVGNWLGRRKTIFLGSAIMVVGAILQCTS---YHLPQLIIGRLVTG  136
             +++GCF GS+    +G+  GR+K++ + + + V+GA+LQ  +   + + QLI+GR++ G
Sbjct  54   IFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVG  113

Query  137  FGNGMNTSTVPTWQSECCRSNRRGQMVMIEGAMITCGITISYWIDFGLLFADPNEVAWRF  196
             G G  +   P + SE      RG +  +    IT GI ++Y    GL     N   WR 
Sbjct  114  IGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTS-NSDGWRI  172

Query  197  PLAFQIFFAAIILAFVMWLPESPRWLVLKGREDEARQTLTALLGHDADETFVDTEFTAIK  256
            PL  Q+  A +++  +++LPESPRWLV KGR +EAR+ L  L G    +  +D    +++
Sbjct  173  PLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLE  232

Query  257  ATVLEMSKGSFRDMFTMTEDRHFHRTVLAYVNQMFQQISGINLITYYIPVVLEQQLGMDM  316
            A   E  K S++++F+    R   R ++  + Q+FQQ++GIN I YY   + E  LG+  
Sbjct  233  AGQ-EAEKASWKELFSTKTRRQ--RLLIGVMLQIFQQLTGINAIFYYSTTIFEN-LGLS-  287

Query  317  IKSRLVAACNGTEYFIASWIAVFTIEQFGRRSLMLFGAAGMSISMVILAVTASLGTDASK  376
              S LV    G   F+ ++IA+F +++FGRR L+L GAAGM+I  VIL + A LG   S 
Sbjct  288  -DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSD  346

Query  377  VA---CAVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWIFNFMVVMIT  433
             A     VF+ +F  FFA+GW  + W+  +E+ PL +R+ A ALAT++NW+ NF++  + 
Sbjct  347  WAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLF  406

Query  434  PVAFENIKWR-TYIIFAVINAAIFPVVYFFYPETTRRSLEEMDRIF  478
            P+  + I    T+ IFA +       V+FF PET  R+LEE+D +F
Sbjct  407  PIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 66.3 bits (162),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 120/351 (34%), Gaps = 48/351 (14%)

Query  75   GIVVAAYNLGCFAGSIPTIWVGNWLGRRKTIFLGSAIMVVGAILQCTSYHLPQLIIGRLV  134
            G+++  ++LG          + +  GRR+ + +G  +  +G +L   +  L  L++ R++
Sbjct  35   GLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL  94

Query  135  TGFGNGMNTSTVPTWQSECCRSNRRGQMVMIEGAMITCGITISYWIDFGLLFADPNEVAW  194
             G G G          ++      RG+ + +  A    G  +   +  G L A      +
Sbjct  95   QGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLL--GGLLAS----LF  148

Query  195  RFPLAFQIFFAAIILAFVM-WLPESPRWLVLKGREDEARQTLTALLGHDADETFVDTEFT  253
             +  AF I     +LA V+  LP  P         +EAR +L                  
Sbjct  149  GWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKA------------  196

Query  254  AIKATVLEMSKGSFRDMFTMTEDRHFHRTVLAYVNQMFQQISGINLITYYIPVVLEQQLG  313
                                         VL  +  +         +  Y+P+  E  LG
Sbjct  197  ------------------------LLRDPVLWLLLALLLFGFAFFGLLTYLPLYQE-VLG  231

Query  314  MDMIKSRLVAACNGTEYFIASWIAVFTIEQFGRRSLMLFGAAGMSISMVILAVTASLGTD  373
            +  + + L+    G    I   +     ++ GRR  +L     + ++ + L + +     
Sbjct  232  LSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTL--  289

Query  374  ASKVACAVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWI  424
             S +   + L +    F + +        +++ P + R  A+ L  ++  +
Sbjct  290  -SSLWLLLALLLLGFGFGLVF-PALNALVSDLAPKEERGTASGLYNTAGSL  338



Lambda      K        H        a         alpha
   0.326    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00031417

Length=451
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         287     2e-93


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 287 bits (737),  Expect = 2e-93, Method: Composition-based stats.
 Identities = 154/439 (35%), Positives = 242/439 (55%), Gaps = 23/439 (5%)

Query  20   IIAGMDFLLFGYDQGVTGGLLTLESFIKYFPTIALNGPYFESLSPSERSAQSTRQGIVVA  79
            ++A +   LFGYD GV G  LTL  F K F                     S   G++V+
Sbjct  3    LVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAAL---------SVLSGLIVS  53

Query  80   AYNLGCFAGSIPTIWVGNWLGRRKTIFLGSAIMVVGAILQCTS---YHLPQLIIGRLVTG  136
             +++GCF GS+    +G+  GR+K++ + + + V+GA+LQ  +   + + QLI+GR++ G
Sbjct  54   IFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVG  113

Query  137  FGNGMNTSTVPTWQSECCRSNRRGQMVMIEGAMITCGITISYWIDFGLLFADPNEVAWRF  196
             G G  +   P + SE      RG +  +    IT GI ++Y    GL     N   WR 
Sbjct  114  IGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTS-NSDGWRI  172

Query  197  PLAFQIFFAAIILAFVMWLPESPRWLVLKGREDEARQTLTALLGHDADETFVDTEFTAIK  256
            PL  Q+  A +++  +++LPESPRWLV KGR +EAR+ L  L G    +  +D    +++
Sbjct  173  PLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLE  232

Query  257  ATVLEMSKGSFRDMFTMTEDRHFHRTVLAYVNQMFQQISGINLITYYIPVVLEQQLGMDM  316
            A   E  K S++++F+    R   R ++  + Q+FQQ++GIN I YY   + E  LG+  
Sbjct  233  AGQ-EAEKASWKELFSTKTRRQ--RLLIGVMLQIFQQLTGINAIFYYSTTIFEN-LGLS-  287

Query  317  IKSRLVAACNGTEYFIASWIAVFTIEQFGRRSLMLFGAAGMSISMVILAVTASLGTDASK  376
              S LV    G   F+ ++IA+F +++FGRR L+L GAAGM+I  VIL + A LG   S 
Sbjct  288  -DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSD  346

Query  377  VA---CAVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWIFNFMVVMIT  433
             A     VF+ +F  FFA+GW  + W+  +E+ PL +R+ A ALAT++NW+ NF++  + 
Sbjct  347  WAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLF  406

Query  434  PVAFENIKWR-TYIIFAVM  451
            P+  + I    T+ IFA +
Sbjct  407  PIITDAIGLGYTFFIFAGL  425



Lambda      K        H        a         alpha
   0.328    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 553667144


Query= TCONS_00031418

Length=311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         213     1e-66


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 213 bits (545),  Expect = 1e-66, Method: Composition-based stats.
 Identities = 114/313 (36%), Positives = 176/313 (56%), Gaps = 11/313 (4%)

Query  3    TSTVPTWQSECCRSNRRGQMVMIEGAMITCGITISYWIDFGLLFADPNEVAWRFPLAFQI  62
            +   P + SE      RG +  +    IT GI ++Y    GL     N   WR PL  Q+
Sbjct  120  SVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTS-NSDGWRIPLGLQL  178

Query  63   FFAAIILAFVMWLPESPRWLVLKGREDEARQTLTALLGHDADETFVDTEFTAIKATVLEM  122
              A +++  +++LPESPRWLV KGR +EAR+ L  L G    +  +D    +++A   E 
Sbjct  179  VPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQ-EA  237

Query  123  SKGSFRDMFTMTEDRHFHRTVLAYVNQMFQQISGINLITYYIPVVLEQQLGMDMIKSRLV  182
             K S++++F+    R   R ++  + Q+FQQ++GIN I YY   + E  LG+    S LV
Sbjct  238  EKASWKELFSTKTRRQ--RLLIGVMLQIFQQLTGINAIFYYSTTIFEN-LGLS--DSFLV  292

Query  183  AACNGTEYFIASWIAVFTIEQFGRRSLMLFGAAGMSISMVILAVTASLGTDASKVA---C  239
                G   F+ ++IA+F +++FGRR L+L GAAGM+I  VIL + A LG   S  A    
Sbjct  293  TIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVA  352

Query  240  AVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWIFNFMVVMITPVAFEN  299
             VF+ +F  FFA+GW  + W+  +E+ PL +R+ A ALAT++NW+ NF++  + P+  + 
Sbjct  353  IVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDA  412

Query  300  IKWR-TYIIFAVM  311
            I    T+ IFA +
Sbjct  413  IGLGYTFFIFAGL  425



Lambda      K        H        a         alpha
   0.329    0.138    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00035546

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         333     1e-109
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            64.4    1e-11 


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 333 bits (855),  Expect = 1e-109, Method: Composition-based stats.
 Identities = 166/466 (36%), Positives = 257/466 (55%), Gaps = 23/466 (5%)

Query  20   IIAGMDFLLFGYDQGVTGGLLTLESFIKYFPTIALNGPYFESLSPSERSAQSTRQGGVVA  79
            ++A +   LFGYD GV G  LTL  F K F                     S   G +V+
Sbjct  3    LVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAAL---------SVLSGLIVS  53

Query  80   AYNLGCFAGSIPTIWVGNWLGRRKTIFLGSAIMVVGAILQCTS---YHLPQLIIGRLVTG  136
             +++GCF GS+    +G+  GR+K++ + + + V+GA+LQ  +   + + QLI+GR++ G
Sbjct  54   IFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVG  113

Query  137  FGNGMNTSTVPTWQSECCRSNRRGQMVMIEGAMITCGITISYWIDFGLLFADPNEVAWRF  196
             G G  +   P + SE      RG +  +    IT GI ++Y    GL     N   WR 
Sbjct  114  IGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTS-NSDGWRI  172

Query  197  PLAFQIFFAAIILAFVMWLPESPRWLVLKGREDEARQTLTALLGHDADETFVDTEFTAIK  256
            PL  Q+  A +++  +++LPESPRWLV KGR +EAR+ L  L G    +  +D    +++
Sbjct  173  PLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLE  232

Query  257  ATVLEMSKGSFRDMFTMTEDRHFHRTVLAYVNQMFQQISGINLITYYIPVVLEQQLGMDM  316
            A   E  K S++++F+    R   R ++  + Q+FQQ++GIN I YY   + E  LG+  
Sbjct  233  AGQ-EAEKASWKELFSTKTRRQ--RLLIGVMLQIFQQLTGINAIFYYSTTIFEN-LGLS-  287

Query  317  IKSRLVAACNGTEYFIASWIAVFTIEQFGRRSLMLFGAAGMSISMVILAVTASLGTDASK  376
              S LV    G   F+ ++IA+F +++FGRR L+L GAAGM+I  VIL + A LG   S 
Sbjct  288  -DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSD  346

Query  377  VA---CAVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWIFNFMVVMIT  433
             A     VF+ +F  FFA+GW  + W+  +E+ PL +R+ A ALAT++NW+ NF++  + 
Sbjct  347  WAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLF  406

Query  434  PVAFENIKWR-TYIIFAVINAAIFPVVYFFYPETTRRSLEEMDRIF  478
            P+  + I    T+ IFA +       V+FF PET  R+LEE+D +F
Sbjct  407  PIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 64.4 bits (157),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 118/349 (34%), Gaps = 48/349 (14%)

Query  77   VVAAYNLGCFAGSIPTIWVGNWLGRRKTIFLGSAIMVVGAILQCTSYHLPQLIIGRLVTG  136
            ++  ++LG          + +  GRR+ + +G  +  +G +L   +  L  L++ R++ G
Sbjct  37   LLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG  96

Query  137  FGNGMNTSTVPTWQSECCRSNRRGQMVMIEGAMITCGITISYWIDFGLLFADPNEVAWRF  196
             G G          ++      RG+ + +  A    G  +   +  G L A      + +
Sbjct  97   LGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLL--GGLLAS----LFGW  150

Query  197  PLAFQIFFAAIILAFVM-WLPESPRWLVLKGREDEARQTLTALLGHDADETFVDTEFTAI  255
              AF I     +LA V+  LP  P         +EAR +L                    
Sbjct  151  RAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKA--------------  196

Query  256  KATVLEMSKGSFRDMFTMTEDRHFHRTVLAYVNQMFQQISGINLITYYIPVVLEQQLGMD  315
                                       VL  +  +         +  Y+P+  E  LG+ 
Sbjct  197  ----------------------LLRDPVLWLLLALLLFGFAFFGLLTYLPLYQE-VLGLS  233

Query  316  MIKSRLVAACNGTEYFIASWIAVFTIEQFGRRSLMLFGAAGMSISMVILAVTASLGTDAS  375
             + + L+    G    I   +     ++ GRR  +L     + ++ + L + +      S
Sbjct  234  ALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTL---S  290

Query  376  KVACAVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWI  424
             +   + L +    F + +        +++ P + R  A+ L  ++  +
Sbjct  291  SLWLLLALLLLGFGFGLVF-PALNALVSDLAPKEERGTASGLYNTAGSL  338



Lambda      K        H        a         alpha
   0.326    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00035547

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         331     5e-109
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            66.3    3e-12 


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 331 bits (850),  Expect = 5e-109, Method: Composition-based stats.
 Identities = 166/466 (36%), Positives = 258/466 (55%), Gaps = 23/466 (5%)

Query  20   IIAGMDFLLFGYDQGVTGGLLTLESFIKYFPTIALNGPYFESLSPSERSAQSTRQGIVVA  79
            ++A +   LFGYD GV G  LTL  F K F                     S   G++V+
Sbjct  3    LVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAAL---------SVLSGLIVS  53

Query  80   AYNLGCFAGSIPTIWVGNWLGRRKTIFLGSAIMVVGAILQCTS---YHLPQLIIGRLVTG  136
             +++GCF GS+    +G+  GR+K++ + + + V+GA+LQ  +   + + QLI+GR++ G
Sbjct  54   IFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVG  113

Query  137  FGNGMNTSTVPTWQSECCRSNRRGQMVMIEGAMITCGITISYWIDFGLLFADPNEVAWRF  196
             G G  +   P + SE      RG +  +    IT GI ++Y    GL     N   WR 
Sbjct  114  IGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTS-NSDGWRI  172

Query  197  PLAFQIFFAAIILAFVMWLPESPRWLVLKGREDEARQTLTALLGHDADETFVDTEFTAIK  256
            PL  Q+  A +++  +++LPESPRWLV KGR +EAR+ L  L G    +  +D    +++
Sbjct  173  PLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLE  232

Query  257  ATVLEMSKGSFRDMFTMTEDRHFHRTVLAYVNQMFQQISGINLITYYIPVVLEQQLGMDM  316
            A   E  K S++++F+    R   R ++  + Q+FQQ++GIN I YY   + E  LG+  
Sbjct  233  AGQ-EAEKASWKELFSTKTRRQ--RLLIGVMLQIFQQLTGINAIFYYSTTIFEN-LGLS-  287

Query  317  IKSRLVAACNGTEYFIASWIAVFTIEQFGRRSLMLFGAAGMSISMVILAVTASLGTDASK  376
              S LV    G   F+ ++IA+F +++FGRR L+L GAAGM+I  VIL + A LG   S 
Sbjct  288  -DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSD  346

Query  377  VA---CAVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWIFNFMVVMIT  433
             A     VF+ +F  FFA+GW  + W+  +E+ PL +R+ A ALAT++NW+ NF++  + 
Sbjct  347  WAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLF  406

Query  434  PVAFENIKWR-TYIIFAVMYAAIFPVVYFFYPETTRRSLEEMDRIF  478
            P+  + I    T+ IFA +       V+FF PET  R+LEE+D +F
Sbjct  407  PIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 66.3 bits (162),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 120/351 (34%), Gaps = 48/351 (14%)

Query  75   GIVVAAYNLGCFAGSIPTIWVGNWLGRRKTIFLGSAIMVVGAILQCTSYHLPQLIIGRLV  134
            G+++  ++LG          + +  GRR+ + +G  +  +G +L   +  L  L++ R++
Sbjct  35   GLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL  94

Query  135  TGFGNGMNTSTVPTWQSECCRSNRRGQMVMIEGAMITCGITISYWIDFGLLFADPNEVAW  194
             G G G          ++      RG+ + +  A    G  +   +  G L A      +
Sbjct  95   QGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLL--GGLLAS----LF  148

Query  195  RFPLAFQIFFAAIILAFVM-WLPESPRWLVLKGREDEARQTLTALLGHDADETFVDTEFT  253
             +  AF I     +LA V+  LP  P         +EAR +L                  
Sbjct  149  GWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKA------------  196

Query  254  AIKATVLEMSKGSFRDMFTMTEDRHFHRTVLAYVNQMFQQISGINLITYYIPVVLEQQLG  313
                                         VL  +  +         +  Y+P+  E  LG
Sbjct  197  ------------------------LLRDPVLWLLLALLLFGFAFFGLLTYLPLYQE-VLG  231

Query  314  MDMIKSRLVAACNGTEYFIASWIAVFTIEQFGRRSLMLFGAAGMSISMVILAVTASLGTD  373
            +  + + L+    G    I   +     ++ GRR  +L     + ++ + L + +     
Sbjct  232  LSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTL--  289

Query  374  ASKVACAVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWI  424
             S +   + L +    F + +        +++ P + R  A+ L  ++  +
Sbjct  290  -SSLWLLLALLLLGFGFGLVF-PALNALVSDLAPKEERGTASGLYNTAGSL  338



Lambda      K        H        a         alpha
   0.326    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00031421

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            87.9    2e-19


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 87.9 bits (218),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 70/373 (19%), Positives = 130/373 (35%), Gaps = 50/373 (13%)

Query  59   FWVLYFLCSAIRSNVGLAQTMNMDVGHDLGSVLHLTPHQISTGLALFYVCYVVFDLPSNL  118
             ++  FL +  RS +G A      +   L   L ++P +I   L LF + Y +    +  
Sbjct  1    LFLAAFLAALGRSLLGPA------LPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGR  54

Query  119  VMTRLSPHVWMSRIVISVGIIGSCMAAMKAAWSLYLLRLLLGIFIAGMWPGMTYYLTLFY  178
            +  R      +   ++   +    +    + W L +LR+L G+    ++P     +  ++
Sbjct  55   LSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWF  114

Query  179  PPSRTGKRIGQYFTAAQISAAVVGLVSAGFQKMDGERGLVGFQWMFLVYGIITIAVGIVL  238
            PP   G+ +G       + AA+  L+            L G++  FL+  I+++   +  
Sbjct  115  PPEERGRALGLVSAGFGLGAALGPLLGGLLA------SLFGWRAAFLILAILSLLAAV--  166

Query  239  LWWLPDRPLAPGVEPPQRKYFKWLQRSPPALTGRDAEIHYHDLRRVYHRPQWSVRDLLRV  298
            L  LP  P       P  +    L                             +     +
Sbjct  167  LLLLPRPPPESKRPKPAEEARLSL-----------------------------IVAWKAL  197

Query  299  FLDWRLWPLLVMYFGVVGVGIGVQNYAT-VIIRGINPSLNGIDLSLLTAPIWLMDLLGIL  357
              D  LW LL +          +        + G++  L G+ L L      L+  +G L
Sbjct  198  LRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLG----GLLGAIGRL  253

Query  358  LVTPFSDRFHKHRALFFSFPVCLQILGLLLTTFAGSASNSWPRYGGLLIVGFGLGPTVPI  417
            L+   SDR  + R L  +  +   IL  L         +S      LL++GFG G   P 
Sbjct  254  LLGRLSDRLGRRRRLLLALLLL--ILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPA  311

Query  418  TMSWTAEVFQPRH  430
              +  +++     
Sbjct  312  LNALVSDLAPKEE  324



Lambda      K        H        a         alpha
   0.326    0.141    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688900030


Query= TCONS_00035548

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         333     8e-110
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            66.3    2e-12 


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 333 bits (856),  Expect = 8e-110, Method: Composition-based stats.
 Identities = 166/466 (36%), Positives = 258/466 (55%), Gaps = 23/466 (5%)

Query  20   IIAGMDFLLFGYDQGVTGGLLTLESFIKYFPTIALNGPYFESLSPSERSAQSTRQGIVVA  79
            ++A +   LFGYD GV G  LTL  F K F                     S   G++V+
Sbjct  3    LVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAAL---------SVLSGLIVS  53

Query  80   AYNLGCFAGSIPTIWVGNWLGRRKTIFLGSAIMVVGAILQCTS---YHLPQLIIGRLVTG  136
             +++GCF GS+    +G+  GR+K++ + + + V+GA+LQ  +   + + QLI+GR++ G
Sbjct  54   IFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVG  113

Query  137  FGNGMNTSTVPTWQSECCRSNRRGQMVMIEGAMITCGITISYWIDFGLLFADPNEVAWRF  196
             G G  +   P + SE      RG +  +    IT GI ++Y    GL     N   WR 
Sbjct  114  IGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTS-NSDGWRI  172

Query  197  PLAFQIFFAAIILAFVMWLPESPRWLVLKGREDEARQTLTALLGHDADETFVDTEFTAIK  256
            PL  Q+  A +++  +++LPESPRWLV KGR +EAR+ L  L G    +  +D    +++
Sbjct  173  PLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLE  232

Query  257  ATVLEMSKGSFRDMFTMTEDRHFHRTVLAYVNQMFQQISGINLITYYIPVVLEQQLGMDM  316
            A   E  K S++++F+    R   R ++  + Q+FQQ++GIN I YY   + E  LG+  
Sbjct  233  AGQ-EAEKASWKELFSTKTRRQ--RLLIGVMLQIFQQLTGINAIFYYSTTIFEN-LGLS-  287

Query  317  IKSRLVAACNGTEYFIASWIAVFTIEQFGRRSLMLFGAAGMSISMVILAVTASLGTDASK  376
              S LV    G   F+ ++IA+F +++FGRR L+L GAAGM+I  VIL + A LG   S 
Sbjct  288  -DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSD  346

Query  377  VA---CAVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWIFNFMVVMIT  433
             A     VF+ +F  FFA+GW  + W+  +E+ PL +R+ A ALAT++NW+ NF++  + 
Sbjct  347  WAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLF  406

Query  434  PVAFENIKWR-TYIIFAVINAAIFPVVYFFYPETTRRSLEEMDRIF  478
            P+  + I    T+ IFA +       V+FF PET  R+LEE+D +F
Sbjct  407  PIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 66.3 bits (162),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 120/351 (34%), Gaps = 48/351 (14%)

Query  75   GIVVAAYNLGCFAGSIPTIWVGNWLGRRKTIFLGSAIMVVGAILQCTSYHLPQLIIGRLV  134
            G+++  ++LG          + +  GRR+ + +G  +  +G +L   +  L  L++ R++
Sbjct  35   GLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL  94

Query  135  TGFGNGMNTSTVPTWQSECCRSNRRGQMVMIEGAMITCGITISYWIDFGLLFADPNEVAW  194
             G G G          ++      RG+ + +  A    G  +   +  G L A      +
Sbjct  95   QGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLL--GGLLAS----LF  148

Query  195  RFPLAFQIFFAAIILAFVM-WLPESPRWLVLKGREDEARQTLTALLGHDADETFVDTEFT  253
             +  AF I     +LA V+  LP  P         +EAR +L                  
Sbjct  149  GWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKA------------  196

Query  254  AIKATVLEMSKGSFRDMFTMTEDRHFHRTVLAYVNQMFQQISGINLITYYIPVVLEQQLG  313
                                         VL  +  +         +  Y+P+  E  LG
Sbjct  197  ------------------------LLRDPVLWLLLALLLFGFAFFGLLTYLPLYQE-VLG  231

Query  314  MDMIKSRLVAACNGTEYFIASWIAVFTIEQFGRRSLMLFGAAGMSISMVILAVTASLGTD  373
            +  + + L+    G    I   +     ++ GRR  +L     + ++ + L + +     
Sbjct  232  LSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTL--  289

Query  374  ASKVACAVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWI  424
             S +   + L +    F + +        +++ P + R  A+ L  ++  +
Sbjct  290  -SSLWLLLALLLLGFGFGLVF-PALNALVSDLAPKEERGTASGLYNTAGSL  338



Lambda      K        H        a         alpha
   0.326    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00031419

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         281     2e-91


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 281 bits (722),  Expect = 2e-91, Method: Composition-based stats.
 Identities = 139/374 (37%), Positives = 213/374 (57%), Gaps = 14/374 (4%)

Query  1    MVVGAILQCTS---YHLPQLIIGRLVTGFGNGMNTSTVPTWQSECCRSNRRGQMVMIEGA  57
             V+GA+LQ  +   + + QLI+GR++ G G G  +   P + SE      RG +  +   
Sbjct  86   FVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEIAPKKLRGALGSLYQL  145

Query  58   MITCGITISYWIDFGLLFADPNEVAWRFPLAFQIFFAAIILAFVMWLPESPRWLVLKGRE  117
             IT GI ++Y    GL     N   WR PL  Q+  A +++  +++LPESPRWLV KGR 
Sbjct  146  AITFGILLAYIFGLGLNKTS-NSDGWRIPLGLQLVPALLLIIGLLFLPESPRWLVEKGRL  204

Query  118  DEARQTLTALLGHDADETFVDTEFTAIKATVLEMSKGSFRDMFTMTEDRHFHRTVLAYVN  177
            +EAR+ L  L G    +  +D    +++A   E  K S++++F+    R   R ++  + 
Sbjct  205  EEAREVLAKLRGVPDVDRELDEIKDSLEAGQ-EAEKASWKELFSTKTRRQ--RLLIGVML  261

Query  178  QMFQQISGINLITYYIPVVLEQQLGMDMIKSRLVAACNGTEYFIASWIAVFTIEQFGRRS  237
            Q+FQQ++GIN I YY   + E  LG+    S LV    G   F+ ++IA+F +++FGRR 
Sbjct  262  QIFQQLTGINAIFYYSTTIFEN-LGLS--DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRP  318

Query  238  LMLFGAAGMSISMVILAVTASLGTDASKVA---CAVFLFVFNTFFAIGWLGMTWLYPAEI  294
            L+L GAAGM+I  VIL + A LG   S  A     VF+ +F  FFA+GW  + W+  +E+
Sbjct  319  LLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVPWVIVSEL  378

Query  295  VPLKIRAPANALATSSNWIFNFMVVMITPVAFENIKWR-TYIIFAVINAAIFPVVYFFYP  353
             PL +R+ A ALAT++NW+ NF++  + P+  + I    T+ IFA +       V+FF P
Sbjct  379  FPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFIIFVFFFVP  438

Query  354  ETTRRSLEEMDRIF  367
            ET  R+LEE+D +F
Sbjct  439  ETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.326    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00031420

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         259     4e-83


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 259 bits (665),  Expect = 4e-83, Method: Composition-based stats.
 Identities = 126/340 (37%), Positives = 192/340 (56%), Gaps = 11/340 (3%)

Query  3    TSTVPTWQSECCRSNRRGQMVMIEGAMITCGITISYWIDFGLLFADPNEVAWRFPLAFQI  62
            +   P + SE      RG +  +    IT GI ++Y    GL     N   WR PL  Q+
Sbjct  120  SVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTS-NSDGWRIPLGLQL  178

Query  63   FFAAIILAFVMWLPESPRWLVLKGREDEARQTLTALLGHDADETFVDTEFTAIKATVLEM  122
              A +++  +++LPESPRWLV KGR +EAR+ L  L G    +  +D    +++A   E 
Sbjct  179  VPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQ-EA  237

Query  123  SKGSFRDMFTMTEDRHFHRTVLAYVNQMFQQISGINLITYYIPVVLEQQLGMDMIKSRLV  182
             K S++++F+    R   R ++  + Q+FQQ++GIN I YY   + E  LG+    S LV
Sbjct  238  EKASWKELFSTKTRRQ--RLLIGVMLQIFQQLTGINAIFYYSTTIFEN-LGLS--DSFLV  292

Query  183  AACNGTEYFIASWIAVFTIEQFGRRSLMLFGAAGMSISMVILAVTASLGTDASKVA---C  239
                G   F+ ++IA+F +++FGRR L+L GAAGM+I  VIL + A LG   S  A    
Sbjct  293  TIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVA  352

Query  240  AVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWIFNFMVVMITPVAFEN  299
             VF+ +F  FFA+GW  + W+  +E+ PL +R+ A ALAT++NW+ NF++  + P+  + 
Sbjct  353  IVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDA  412

Query  300  IKWR-TYIIFAVINAAIFPVVYFFYPETTRRSLEEMDRIF  338
            I    T+ IFA +       V+FF PET  R+LEE+D +F
Sbjct  413  IGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.326    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00035549

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         329     3e-108
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            63.6    2e-11 


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 329 bits (845),  Expect = 3e-108, Method: Composition-based stats.
 Identities = 165/466 (35%), Positives = 255/466 (55%), Gaps = 23/466 (5%)

Query  20   IIAGMDFLLFGYDQGVTGGLLTLESFIKYFPTIALNGPYFESLSPSERSAQSTRQGGYFA  79
            ++A +   LFGYD GV G  LTL  F K F                     S   G   +
Sbjct  3    LVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAAL---------SVLSGLIVS  53

Query  80   AYNLGCFAGSIPTIWVGNWLGRRKTIFLGSAIMVVGAILQCTS---YHLPQLIIGRLVTG  136
             +++GCF GS+    +G+  GR+K++ + + + V+GA+LQ  +   + + QLI+GR++ G
Sbjct  54   IFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVG  113

Query  137  FGNGMNTSTVPTWQSECCRSNRRGQMVMIEGAMITCGITISYWIDFGLLFADPNEVAWRF  196
             G G  +   P + SE      RG +  +    IT GI ++Y    GL     N   WR 
Sbjct  114  IGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTS-NSDGWRI  172

Query  197  PLAFQIFFAAIILAFVMWLPESPRWLVLKGREDEARQTLTALLGHDADETFVDTEFTAIK  256
            PL  Q+  A +++  +++LPESPRWLV KGR +EAR+ L  L G    +  +D    +++
Sbjct  173  PLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLE  232

Query  257  ATVLEMSKGSFRDMFTMTEDRHFHRTVLAYVNQMFQQISGINLITYYIPVVLEQQLGMDM  316
            A   E  K S++++F+    R   R ++  + Q+FQQ++GIN I YY   + E  LG+  
Sbjct  233  AGQ-EAEKASWKELFSTKTRRQ--RLLIGVMLQIFQQLTGINAIFYYSTTIFEN-LGLS-  287

Query  317  IKSRLVAACNGTEYFIASWIAVFTIEQFGRRSLMLFGAAGMSISMVILAVTASLGTDASK  376
              S LV    G   F+ ++IA+F +++FGRR L+L GAAGM+I  VIL + A LG   S 
Sbjct  288  -DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSD  346

Query  377  VA---CAVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWIFNFMVVMIT  433
             A     VF+ +F  FFA+GW  + W+  +E+ PL +R+ A ALAT++NW+ NF++  + 
Sbjct  347  WAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLF  406

Query  434  PVAFENIKWR-TYIIFAVINAAIFPVVYFFYPETTRRSLEEMDRIF  478
            P+  + I    T+ IFA +       V+FF PET  R+LEE+D +F
Sbjct  407  PIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 63.6 bits (155),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 116/348 (33%), Gaps = 48/348 (14%)

Query  78   FAAYNLGCFAGSIPTIWVGNWLGRRKTIFLGSAIMVVGAILQCTSYHLPQLIIGRLVTGF  137
               ++LG          + +  GRR+ + +G  +  +G +L   +  L  L++ R++ G 
Sbjct  38   LTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL  97

Query  138  GNGMNTSTVPTWQSECCRSNRRGQMVMIEGAMITCGITISYWIDFGLLFADPNEVAWRFP  197
            G G          ++      RG+ + +  A    G  +   +  G L A      + + 
Sbjct  98   GAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLL--GGLLAS----LFGWR  151

Query  198  LAFQIFFAAIILAFVM-WLPESPRWLVLKGREDEARQTLTALLGHDADETFVDTEFTAIK  256
             AF I     +LA V+  LP  P         +EAR +L                     
Sbjct  152  AAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKA---------------  196

Query  257  ATVLEMSKGSFRDMFTMTEDRHFHRTVLAYVNQMFQQISGINLITYYIPVVLEQQLGMDM  316
                                      VL  +  +         +  Y+P+  E  LG+  
Sbjct  197  ---------------------LLRDPVLWLLLALLLFGFAFFGLLTYLPLYQE-VLGLSA  234

Query  317  IKSRLVAACNGTEYFIASWIAVFTIEQFGRRSLMLFGAAGMSISMVILAVTASLGTDASK  376
            + + L+    G    I   +     ++ GRR  +L     + ++ + L + +      S 
Sbjct  235  LLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTL---SS  291

Query  377  VACAVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWI  424
            +   + L +    F + +        +++ P + R  A+ L  ++  +
Sbjct  292  LWLLLALLLLGFGFGLVF-PALNALVSDLAPKEERGTASGLYNTAGSL  338



Lambda      K        H        a         alpha
   0.326    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00031422

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         334     4e-110
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            66.3    2e-12 


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 334 bits (858),  Expect = 4e-110, Method: Composition-based stats.
 Identities = 166/466 (36%), Positives = 258/466 (55%), Gaps = 23/466 (5%)

Query  20   IIAGMDFLLFGYDQGVTGGLLTLESFIKYFPTIALNGPYFESLSPSERSAQSTRQGIVVA  79
            ++A +   LFGYD GV G  LTL  F K F                     S   G++V+
Sbjct  3    LVAALGGFLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAAL---------SVLSGLIVS  53

Query  80   AYNLGCFAGSIPTIWVGNWLGRRKTIFLGSAIMVVGAILQCTS---YHLPQLIIGRLVTG  136
             +++GCF GS+    +G+  GR+K++ + + + V+GA+LQ  +   + + QLI+GR++ G
Sbjct  54   IFSVGCFIGSLFAGKLGDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVG  113

Query  137  FGNGMNTSTVPTWQSECCRSNRRGQMVMIEGAMITCGITISYWIDFGLLFADPNEVAWRF  196
             G G  +   P + SE      RG +  +    IT GI ++Y    GL     N   WR 
Sbjct  114  IGVGGASVLAPMYISEIAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTS-NSDGWRI  172

Query  197  PLAFQIFFAAIILAFVMWLPESPRWLVLKGREDEARQTLTALLGHDADETFVDTEFTAIK  256
            PL  Q+  A +++  +++LPESPRWLV KGR +EAR+ L  L G    +  +D    +++
Sbjct  173  PLGLQLVPALLLIIGLLFLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLE  232

Query  257  ATVLEMSKGSFRDMFTMTEDRHFHRTVLAYVNQMFQQISGINLITYYIPVVLEQQLGMDM  316
            A   E  K S++++F+    R   R ++  + Q+FQQ++GIN I YY   + E  LG+  
Sbjct  233  AGQ-EAEKASWKELFSTKTRRQ--RLLIGVMLQIFQQLTGINAIFYYSTTIFEN-LGLS-  287

Query  317  IKSRLVAACNGTEYFIASWIAVFTIEQFGRRSLMLFGAAGMSISMVILAVTASLGTDASK  376
              S LV    G   F+ ++IA+F +++FGRR L+L GAAGM+I  VIL + A LG   S 
Sbjct  288  -DSFLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSD  346

Query  377  VA---CAVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWIFNFMVVMIT  433
             A     VF+ +F  FFA+GW  + W+  +E+ PL +R+ A ALAT++NW+ NF++  + 
Sbjct  347  WAGIVAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLF  406

Query  434  PVAFENIKWR-TYIIFAVMNAAIFPVVYFFYPETTRRSLEEMDRIF  478
            P+  + I    T+ IFA +       V+FF PET  R+LEE+D +F
Sbjct  407  PIITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 66.3 bits (162),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 120/351 (34%), Gaps = 48/351 (14%)

Query  75   GIVVAAYNLGCFAGSIPTIWVGNWLGRRKTIFLGSAIMVVGAILQCTSYHLPQLIIGRLV  134
            G+++  ++LG          + +  GRR+ + +G  +  +G +L   +  L  L++ R++
Sbjct  35   GLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL  94

Query  135  TGFGNGMNTSTVPTWQSECCRSNRRGQMVMIEGAMITCGITISYWIDFGLLFADPNEVAW  194
             G G G          ++      RG+ + +  A    G  +   +  G L A      +
Sbjct  95   QGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLL--GGLLAS----LF  148

Query  195  RFPLAFQIFFAAIILAFVM-WLPESPRWLVLKGREDEARQTLTALLGHDADETFVDTEFT  253
             +  AF I     +LA V+  LP  P         +EAR +L                  
Sbjct  149  GWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKA------------  196

Query  254  AIKATVLEMSKGSFRDMFTMTEDRHFHRTVLAYVNQMFQQISGINLITYYIPVVLEQQLG  313
                                         VL  +  +         +  Y+P+  E  LG
Sbjct  197  ------------------------LLRDPVLWLLLALLLFGFAFFGLLTYLPLYQE-VLG  231

Query  314  MDMIKSRLVAACNGTEYFIASWIAVFTIEQFGRRSLMLFGAAGMSISMVILAVTASLGTD  373
            +  + + L+    G    I   +     ++ GRR  +L     + ++ + L + +     
Sbjct  232  LSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTL--  289

Query  374  ASKVACAVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWI  424
             S +   + L +    F + +        +++ P + R  A+ L  ++  +
Sbjct  290  -SSLWLLLALLLLGFGFGLVF-PALNALVSDLAPKEERGTASGLYNTAGSL  338



Lambda      K        H        a         alpha
   0.326    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00031423

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         243     4e-77


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 243 bits (622),  Expect = 4e-77, Method: Composition-based stats.
 Identities = 121/321 (38%), Positives = 185/321 (58%), Gaps = 11/321 (3%)

Query  1    MVMIEGAMITCGITISYWIDFGLLFADPNEVAWRFPLAFQIFFAAIILAFVMWLPESPRW  60
            +  +    IT GI ++Y    GL     N   WR PL  Q+  A +++  +++LPESPRW
Sbjct  139  LGSLYQLAITFGILLAYIFGLGLNKTS-NSDGWRIPLGLQLVPALLLIIGLLFLPESPRW  197

Query  61   LVLKGREDEARQTLTALLGHDADETFVDTEFTAIKATVLEMSKGSFRDMFTMTEDRHFHR  120
            LV KGR +EAR+ L  L G    +  +D    +++A   E  K S++++F+    R   R
Sbjct  198  LVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLEAGQ-EAEKASWKELFSTKTRRQ--R  254

Query  121  TVLAYVNQMFQQISGINLITYYIPVVLEQQLGMDMIKSRLVAACNGTEYFIASWIAVFTI  180
             ++  + Q+FQQ++GIN I YY   + E  LG+    S LV    G   F+ ++IA+F +
Sbjct  255  LLIGVMLQIFQQLTGINAIFYYSTTIFEN-LGLS--DSFLVTIIVGVVNFVFTFIAIFLV  311

Query  181  EQFGRRSLMLFGAAGMSISMVILAVTASLGTDASKVA---CAVFLFVFNTFFAIGWLGMT  237
            ++FGRR L+L GAAGM+I  VIL + A LG   S  A     VF+ +F  FFA+GW  + 
Sbjct  312  DRFGRRPLLLLGAAGMAICFVILGIVALLGVSKSDWAGIVAIVFIALFIAFFAMGWGPVP  371

Query  238  WLYPAEIVPLKIRAPANALATSSNWIFNFMVVMITPVAFENIKWR-TYIIFAVINAAIFP  296
            W+  +E+ PL +R+ A ALAT++NW+ NF++  + P+  + I    T+ IFA +      
Sbjct  372  WVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIGLGYTFFIFAGLLVLFII  431

Query  297  VVYFFYPETTRRSLEEMDRIF  317
             V+FF PET  R+LEE+D +F
Sbjct  432  FVFFFVPETKGRTLEEIDELF  452



Lambda      K        H        a         alpha
   0.327    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 462895916


Query= TCONS_00031424

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            61.3    5e-11


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 61.3 bits (149),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 47/265 (18%), Positives = 87/265 (33%), Gaps = 42/265 (16%)

Query  1    MWPGMTYYLTLFYPPSRTGKRIGQYFTAAQISAAVVGLVSAGFQKMDGERGLVGFQWMFL  60
            ++P     +  ++PP   G+ +G       + AA+  L+            L G++  FL
Sbjct  102  LFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLA------SLFGWRAAFL  155

Query  61   VYGIITIAVGIVLLWWLPDRPLAPGVEPPQRKYFKWLQRSPPALTGRDAEIHYHDLRRVY  120
            +  I+++   +  L  LP  P       P  +                            
Sbjct  156  ILAILSLLAAV--LLLLPRPPPESKRPKPAEEARL-------------------------  188

Query  121  HRPQWSVRDLLRVFLDWRLWPLLVMYFGVVGVGIGVQNYATVIIRGINPSLNGIDLSLLT  180
                 S+    +  L   +  LL+          G+  Y  +    +   L+ +   LL 
Sbjct  189  -----SLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLG--LSALLAGLLL  241

Query  181  APIWLVDLLGILLVTPFSDRFHKHRALFFSFPVCLQILGLLLTTFAGSASNSWPRYGGLL  240
                L+  +G LL+   SDR  + R L  +  +   IL  L         +S      LL
Sbjct  242  GLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLL--ILAALGLLLLSLTLSSLWLLLALL  299

Query  241  IVGFGLGPTVPITMSWTAEVFQPRH  265
            ++GFG G   P   +  +++     
Sbjct  300  LLGFGFGLVFPALNALVSDLAPKEE  324



Lambda      K        H        a         alpha
   0.326    0.142    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00031426

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            60.5    9e-11


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 60.5 bits (147),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 47/265 (18%), Positives = 87/265 (33%), Gaps = 42/265 (16%)

Query  1    MWPGMTYYLTLFYPPSRTGKRIGQYFTAAQISAAVVGLVSAGFQKMDGERGLVGFQWMFL  60
            ++P     +  ++PP   G+ +G       + AA+  L+            L G++  FL
Sbjct  102  LFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLA------SLFGWRAAFL  155

Query  61   VYGIITIAVGIVLLWWLPDRPLAPGVEPPQRKYFKWLQRSPPALTGRDAEIHYHDLRRVY  120
            +  I+++   +  L  LP  P       P  +                            
Sbjct  156  ILAILSLLAAV--LLLLPRPPPESKRPKPAEEARL-------------------------  188

Query  121  HRPQWSVRDLLRVFLDWRLWPLLVMYFGVVGVGIGVQNYATVIIRGINPSLNGIDLSLLT  180
                 S+    +  L   +  LL+          G+  Y  +    +   L+ +   LL 
Sbjct  189  -----SLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLG--LSALLAGLLL  241

Query  181  APIWLMDLLGILLVTPFSDRFHKHRALFFSFPVCLQILGLLLTTFAGSASNSWPRYGGLL  240
                L+  +G LL+   SDR  + R L  +  +   IL  L         +S      LL
Sbjct  242  GLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLL--ILAALGLLLLSLTLSSLWLLLALL  299

Query  241  IVGFGLGPTVPITMSWTAEVFQPRH  265
            ++GFG G   P   +  +++     
Sbjct  300  LLGFGFGLVFPALNALVSDLAPKEE  324



Lambda      K        H        a         alpha
   0.326    0.142    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00031425

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            87.9    2e-19


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 87.9 bits (218),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 70/373 (19%), Positives = 130/373 (35%), Gaps = 50/373 (13%)

Query  59   FWVLYFLCSAIRSNVGLAQTMNMDVGHDLGSVLHLTPHQISTGLALFYVCYVVFDLPSNL  118
             ++  FL +  RS +G A      +   L   L ++P +I   L LF + Y +    +  
Sbjct  1    LFLAAFLAALGRSLLGPA------LPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGR  54

Query  119  VMTRLSPHVWMSRIVISVGIIGSCMAAMKAAWSLYLLRLLLGIFIAGMWPGMTYYLTLFY  178
            +  R      +   ++   +    +    + W L +LR+L G+    ++P     +  ++
Sbjct  55   LSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWF  114

Query  179  PPSRTGKRIGQYFTAAQISAAVVGLVSAGFQKMDGERGLVGFQWMFLVYGIITIAVGIVL  238
            PP   G+ +G       + AA+  L+            L G++  FL+  I+++   +  
Sbjct  115  PPEERGRALGLVSAGFGLGAALGPLLGGLLA------SLFGWRAAFLILAILSLLAAV--  166

Query  239  LWWLPDRPLAPGVEPPQRKYFKWLQRSPPALTGRDAEIHYHDLRRVYHRPQWSVRDLLRV  298
            L  LP  P       P  +    L                             +     +
Sbjct  167  LLLLPRPPPESKRPKPAEEARLSL-----------------------------IVAWKAL  197

Query  299  FLDWRLWPLLVMYFGVVGVGIGVQNYAT-VIIRGINPSLNGIDLSLLTAPIWLMDLLGIL  357
              D  LW LL +          +        + G++  L G+ L L      L+  +G L
Sbjct  198  LRDPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLG----GLLGAIGRL  253

Query  358  LVTPFSDRFHKHRALFFSFPVCLQILGLLLTTFAGSASNSWPRYGGLLIVGFGLGPTVPI  417
            L+   SDR  + R L  +  +   IL  L         +S      LL++GFG G   P 
Sbjct  254  LLGRLSDRLGRRRRLLLALLLL--ILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPA  311

Query  418  TMSWTAEVFQPRH  430
              +  +++     
Sbjct  312  LNALVSDLAPKEE  324



Lambda      K        H        a         alpha
   0.326    0.141    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688900030


Query= TCONS_00035550

Length=467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            78.6    2e-16


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 78.6 bits (194),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 118/344 (34%), Gaps = 42/344 (12%)

Query  9    LGSVLHLTPHQISTGLALFYVCYVVFDLPSNLVMTRLSPHVWMSRIVISVGIIGSCMAAM  68
            L   L ++P +I   L LF + Y +    +  +  R      +   ++   +    +   
Sbjct  23   LAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA  82

Query  69   KAAWSLYLLRLLLGIFIAGMWPGMTYYLTLFYPPSRTGKRIGQYFTAAQISAAVVGLVSA  128
             + W L +LR+L G+    ++P     +  ++PP   G+ +G       + AA+  L+  
Sbjct  83   SSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGG  142

Query  129  GFQKMDGERGLVGFQWMFLVYGIITIAVGIVLLWWLPDRPLAPGVEPPQRKYFKWLQRSP  188
                      L G++  FL+  I+++   +  L  LP  P       P  +         
Sbjct  143  LLA------SLFGWRAAFLILAILSLLAAV--LLLLPRPPPESKRPKPAEEARL------  188

Query  189  PALTGRDAEIHYHDLRRVYHRPQWSVRDLLRVFLDWRLWPLLVMYFGVVGVGIGVQNYAT  248
                                    S+    +  L   +  LL+          G+  Y  
Sbjct  189  ------------------------SLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLP  224

Query  249  VIIRGINPSLNGIDLSLLTAPIWLMDLLGILLVTPFSDRFHKHRALFFSFPVCLQILGLL  308
            +    +   L+ +   LL     L+  +G LL+   SDR  + R L  +  +   IL  L
Sbjct  225  LYQEVLG--LSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLL--ILAAL  280

Query  309  LTTFAGSASNSWPRYGGLLIVGFGLGPTVPITMSWTAEVFQPRH  352
                     +S      LL++GFG G   P   +  +++     
Sbjct  281  GLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPKEE  324



Lambda      K        H        a         alpha
   0.327    0.142    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 578206408


Query= TCONS_00035551

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00031428

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00031430

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00031429

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00031433

Length=169
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460605 pfam02586, SRAP, SOS response associated peptidase (SR...  157     1e-49


>CDD:460605 pfam02586, SRAP, SOS response associated peptidase (SRAP).  The 
SRAP family functions as a DNA-associated autoproteolytic 
switch that recruits diverse repair enzymes onto DNA damage. 
We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic 
member of the SRAP family, which has been recently 
shown to bind specifically to DNA with 5-hydroxymethylcytosine, 
5-formylcytosine and 5-carboxycytosine, is a sensor for 
these oxidized bases generated by the TET (tetrahedral aminopeptidase 
of the M42 family) enzymes from methylcytosine. Hence, 
its autoproteolytic activity might help it act as a switch 
that recruits DNA repair enzymes to remove these oxidized 
methylcytosine species as part of the DNA demethylation pathway 
downstream of the TET enzymes.
Length=213

 Score = 157 bits (399),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 72/164 (44%), Gaps = 42/164 (26%)

Query  4    DEVPEDDEVRETYNFAPGYNGAVYRADVSDRGFVDDAQEQGTTDDPQEPSPEAVNSVEKY  63
                E+D+ R  YN AP     V RA                  DP              
Sbjct  20   AAEDEEDDYRPRYNVAPTQPVPVVRAR-----------------DPGGD-----------  51

Query  64   HDRKWRYKIQSMRWGLIPFWTKRNPDYGSLMRTINCRDDSLIEDRGMWTSMKRKKRCIVI  123
                    ++ MRWGL+P W K   D     RTIN R ++L E +  + S  R++RC+V 
Sbjct  52   ------RVLRLMRWGLVPSWAK---DPKIGPRTINARSETLAE-KPSFRSAFRRRRCLVP  101

Query  124  CQGFYEWLKKGPGGKEKIPHFIKRKDGDLLCFAGLWDCV-SYEG  166
              GFYEW K   GGK K P++I RKDG  L FAGLW+     +G
Sbjct  102  ADGFYEWKK---GGKGKQPYYIHRKDGRPLAFAGLWEVWRDPDG  142



Lambda      K        H        a         alpha
   0.320    0.140    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00031431

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460605 pfam02586, SRAP, SOS response associated peptidase (SR...  163     1e-51


>CDD:460605 pfam02586, SRAP, SOS response associated peptidase (SRAP).  The 
SRAP family functions as a DNA-associated autoproteolytic 
switch that recruits diverse repair enzymes onto DNA damage. 
We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic 
member of the SRAP family, which has been recently 
shown to bind specifically to DNA with 5-hydroxymethylcytosine, 
5-formylcytosine and 5-carboxycytosine, is a sensor for 
these oxidized bases generated by the TET (tetrahedral aminopeptidase 
of the M42 family) enzymes from methylcytosine. Hence, 
its autoproteolytic activity might help it act as a switch 
that recruits DNA repair enzymes to remove these oxidized 
methylcytosine species as part of the DNA demethylation pathway 
downstream of the TET enzymes.
Length=213

 Score = 163 bits (415),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 59/171 (35%), Positives = 76/171 (44%), Gaps = 42/171 (25%)

Query  16   DEVPEDDEVRETYNFAPGYNGAVYRADVSDRGFVDDAQEQGTTDDPQEPSPEAVNSVEKY  75
                E+D+ R  YN AP     V RA                  DP              
Sbjct  20   AAEDEEDDYRPRYNVAPTQPVPVVRAR-----------------DPGGD-----------  51

Query  76   HDRKWRYKIQSMRWGLIPFWTKRNPDYGSLMRTINCRDDSLIEDRGMWTSMKRKKRCIVI  135
                    ++ MRWGL+P W K   D     RTIN R ++L E +  + S  R++RC+V 
Sbjct  52   ------RVLRLMRWGLVPSWAK---DPKIGPRTINARSETLAE-KPSFRSAFRRRRCLVP  101

Query  136  CQGFYEWLKKGPGGKEKIPHFIKRKDGDLLCFAGLWDCV-SYEGIQLRSFT  185
              GFYEW K   GGK K P++I RKDG  L FAGLW+     +G  L +FT
Sbjct  102  ADGFYEWKK---GGKGKQPYYIHRKDGRPLAFAGLWEVWRDPDGEPLYTFT  149



Lambda      K        H        a         alpha
   0.321    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0732    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00031432

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00031434

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00031435

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00031436

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00035552

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.146    0.522    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00035553

Length=109
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD. M...  84.3    2e-22


>CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD.  Members 
of this family are implicated in bringing cargo forward from 
the ER and binding to coat proteins by their cytoplasmic domains. 
This domain corresponds closely to the beta-strand rich 
GOLD domain described in. The GOLD domain is always found 
combined with lipid- or membrane-association domains.
Length=181

 Score = 84.3 bits (209),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 38/57 (67%), Gaps = 0/57 (0%)

Query  1    MVAEIVNEMEYLRAREQKLRDTNESTNERVKWFAFGTMGMLVGLGVWQVVYLRAYFR  57
             + +I  E +YLR RE + RDTNESTN RV W++   + +LVG+ V QV YL+ +F 
Sbjct  125  QLNDIKREQKYLREREARHRDTNESTNSRVVWWSIIQLLVLVGVSVLQVYYLKRFFE  181



Lambda      K        H        a         alpha
   0.328    0.137    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00031438

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00031439

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00031440

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00031441

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.149    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00031442

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00031443

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00031444

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00035554

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00031446

Length=566


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00031448

Length=566


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00031449

Length=566


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00031447

Length=566


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00035555

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00035556

Length=566


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00035557

Length=566


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00031450

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00031451

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425596 pfam00307, CH, Calponin homology (CH) domain. The CH d...  72.7    4e-16


>CDD:425596 pfam00307, CH, Calponin homology (CH) domain.  The CH domain 
is found in both cytoskeletal proteins and signal transduction 
proteins. The CH domain is involved in actin binding in some 
members of the family. However in calponins there is evidence 
that the CH domain is not involved in its actin binding 
activity. Most member proteins have from two to four copies 
of the CH domain, however some proteins such as calponin have 
only a single copy.
Length=109

 Score = 72.7 bits (179),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 17/117 (15%)

Query  21   PQAAAEVRTWIEETLQEKLPAG---DLLDALKDGVALCKLINLAVSPG-VKYKQSSM-PF  75
             +   E+  WI   L E  P     +    L+DG+ALC L+N  ++PG V  K+ +   F
Sbjct  1    LELEKELLRWINSHLAEYGPGVRVTNFTTDLRDGLALCALLN-KLAPGLVDKKKLNKSEF  59

Query  76   VQMENISHFLRACQ----IPPLSLPPHDVFLTVDLYESKDPAQVLQCLMAFSRRANA  128
             ++ENI+  L   +    +P + + P D+          D   VL  L +  RR  A
Sbjct  60   DKLENINLALDVAEKKLGVPKVLIEPEDLV-------EGDNKSVLTYLASLFRRFQA  109



Lambda      K        H        a         alpha
   0.310    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790552412


Query= TCONS_00031458

Length=721
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428720 pfam06011, TRP, Transient receptor potential (TRP) ion...  600     0.0  
CDD:434037 pfam14558, TRP_N, ML-like domain. This domain is dista...  214     1e-66


>CDD:428720 pfam06011, TRP, Transient receptor potential (TRP) ion channel. 
 This family of proteins are transient receptor potential 
(TRP) ion channels. They are essential for cellular viability 
and are involved in cell growth and cell wall synthesis. 
The genes for these proteins are homologous to polycystic kidney 
disease related ion channel genes.
Length=424

 Score = 600 bits (1550),  Expect = 0.0, Method: Composition-based stats.
 Identities = 243/443 (55%), Positives = 319/443 (72%), Gaps = 19/443 (4%)

Query  168  VGWTTAIISGLGLAASAITSGLGHSNTAAHVAANALSLFGFMQSQAMFGMISVAMPPIVE  227
            V W TA I+GL L ASA+ SGLG+SN AAHVAA+ LSLFG+ QSQAM GM+SV  PPI  
Sbjct  1    VKWVTAGIAGLALLASAVLSGLGNSNAAAHVAASVLSLFGYFQSQAMVGMLSVNYPPIAA  60

Query  228  AWTQNFQWSMGIIHIGFLETLCTWYLRSTGGTPSTLLSELSTTSVEVLKRRKRSIETATN  287
            AWTQNF WSMG+I +GF++ +  WY+++TGGTP+ +L+ LST SV V             
Sbjct  61   AWTQNFAWSMGLIRVGFMQKIINWYVQATGGTPTLVLTSLSTLSVSV-------------  107

Query  288  LMKRGVSNIMKRSSAANDAATHATVVVRGIDRVGFTAGIEETNIFLTGLIFFVFFVFMVM  347
              KR ++   KR +    +      V+RGI RV + AGIE TN F+TGL+FF+ F+ +V+
Sbjct  108  --KRSLAARDKRGNPVTGSPL----VLRGIQRVAYRAGIESTNAFMTGLLFFLIFIAVVV  161

Query  348  VIVALFKAGCEILAKNGRMKSDKFSDFRNGWKVVARGILFRLTLIGFPQMCVLCLWEFTQ  407
            V + LFKA  E+LA+ G MK D+F +FR  W  + +G L RL LIGFPQ+ +LCLWEFTQ
Sbjct  162  VGILLFKAILELLARFGWMKPDRFLEFRKHWWGILKGTLLRLILIGFPQLTILCLWEFTQ  221

Query  408  HNSAAEMVLAVIMFLSVLGALGWAAFKVILLAKRSVVMHKNPAYILYSDPTCLNKWGFLY  467
             +SAA +VLAVI+     G LGWAAF++I +A++S  +HKNPAY+LYSD   LNK+GFLY
Sbjct  222  RDSAAAVVLAVILLALFTGLLGWAAFRIIRIARKSKRLHKNPAYLLYSDKKFLNKYGFLY  281

Query  468  VQYRATAYYFVVPVLLYLLIKAMFIGLGQPSPVVQTVALVIIEAAMLVAVSVLRPWMDKK  527
            VQYRAT Y+F VP+L+Y+ +K +FI   Q S  VQ + L+IIE   L+ +  LRP+MDK+
Sbjct  282  VQYRATRYWFFVPLLVYIFVKGLFIAFAQGSGKVQVIGLLIIELLYLILLIWLRPYMDKR  341

Query  528  TNIYNITIAAINFVNAVFLLFFSEVFNQPGIVTGVMGVVFFVYNAVFSLVLLILVLIASI  587
            TN++NI I+ +N +NA+ LLFFSE F QP IVT VMGVVFFV NA F+LVLLIL+++ +I
Sbjct  342  TNVFNIAISVVNVLNAILLLFFSEEFGQPRIVTTVMGVVFFVINAAFTLVLLILIIVNAI  401

Query  588  YAIVSKNPDTRYQPMRDDRGSFI  610
             A+ SKNPD RY+PM+DDR SF+
Sbjct  402  IALFSKNPDRRYRPMKDDRRSFL  424


>CDD:434037 pfam14558, TRP_N, ML-like domain.  This domain is distantly similar 
to pfam02221 and conserves its pattern of conserved cysteines. 
This suggests that this domain may be involved in 
lipid binding.
Length=137

 Score = 214 bits (547),  Expect = 1e-66, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 98/138 (71%), Gaps = 1/138 (1%)

Query  26   IESNALNLCQDSSNFTATFFSVTFTPNNRSLAFAFDGVAAISGKVTAELVLTAYGYEALR  85
            + + +L+ C D+S FTA++F VT+TP+NR++ F  DG ++ISG VTA+L +TAYGY+   
Sbjct  1    LYTTSLSTCMDNSQFTASYFDVTYTPDNRTVTFNVDGTSSISGNVTADLSVTAYGYQIYN  60

Query  86   KELDPCQMNLAGLCPMNAGPIDVPSANIIVSEDVAKQIPGIAYTVPDLDAKVRIYINSTE  145
            K  DPC +N+ GLCP+  GPID    N  +  D   QIPGIAYT+PDLDA VR+ I ST 
Sbjct  61   KTFDPCDLNVKGLCPLPPGPIDASG-NQPIPADYVSQIPGIAYTIPDLDATVRVRIYSTG  119

Query  146  TRKSITCIEASLSNGKTV  163
            T   I C++A+L+NGKTV
Sbjct  120  TGTEIACVQATLTNGKTV  137



Lambda      K        H        a         alpha
   0.323    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 912380304


Query= TCONS_00031459

Length=721
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428720 pfam06011, TRP, Transient receptor potential (TRP) ion...  600     0.0  
CDD:434037 pfam14558, TRP_N, ML-like domain. This domain is dista...  214     1e-66


>CDD:428720 pfam06011, TRP, Transient receptor potential (TRP) ion channel. 
 This family of proteins are transient receptor potential 
(TRP) ion channels. They are essential for cellular viability 
and are involved in cell growth and cell wall synthesis. 
The genes for these proteins are homologous to polycystic kidney 
disease related ion channel genes.
Length=424

 Score = 600 bits (1550),  Expect = 0.0, Method: Composition-based stats.
 Identities = 243/443 (55%), Positives = 319/443 (72%), Gaps = 19/443 (4%)

Query  168  VGWTTAIISGLGLAASAITSGLGHSNTAAHVAANALSLFGFMQSQAMFGMISVAMPPIVE  227
            V W TA I+GL L ASA+ SGLG+SN AAHVAA+ LSLFG+ QSQAM GM+SV  PPI  
Sbjct  1    VKWVTAGIAGLALLASAVLSGLGNSNAAAHVAASVLSLFGYFQSQAMVGMLSVNYPPIAA  60

Query  228  AWTQNFQWSMGIIHIGFLETLCTWYLRSTGGTPSTLLSELSTTSVEVLKRRKRSIETATN  287
            AWTQNF WSMG+I +GF++ +  WY+++TGGTP+ +L+ LST SV V             
Sbjct  61   AWTQNFAWSMGLIRVGFMQKIINWYVQATGGTPTLVLTSLSTLSVSV-------------  107

Query  288  LMKRGVSNIMKRSSAANDAATHATVVVRGIDRVGFTAGIEETNIFLTGLIFFVFFVFMVM  347
              KR ++   KR +    +      V+RGI RV + AGIE TN F+TGL+FF+ F+ +V+
Sbjct  108  --KRSLAARDKRGNPVTGSPL----VLRGIQRVAYRAGIESTNAFMTGLLFFLIFIAVVV  161

Query  348  VIVALFKAGCEILAKNGRMKSDKFSDFRNGWKVVARGILFRLTLIGFPQMCVLCLWEFTQ  407
            V + LFKA  E+LA+ G MK D+F +FR  W  + +G L RL LIGFPQ+ +LCLWEFTQ
Sbjct  162  VGILLFKAILELLARFGWMKPDRFLEFRKHWWGILKGTLLRLILIGFPQLTILCLWEFTQ  221

Query  408  HNSAAEMVLAVIMFLSVLGALGWAAFKVILLAKRSVVMHKNPAYILYSDPTCLNKWGFLY  467
             +SAA +VLAVI+     G LGWAAF++I +A++S  +HKNPAY+LYSD   LNK+GFLY
Sbjct  222  RDSAAAVVLAVILLALFTGLLGWAAFRIIRIARKSKRLHKNPAYLLYSDKKFLNKYGFLY  281

Query  468  VQYRATAYYFVVPVLLYLLIKAMFIGLGQPSPVVQTVALVIIEAAMLVAVSVLRPWMDKK  527
            VQYRAT Y+F VP+L+Y+ +K +FI   Q S  VQ + L+IIE   L+ +  LRP+MDK+
Sbjct  282  VQYRATRYWFFVPLLVYIFVKGLFIAFAQGSGKVQVIGLLIIELLYLILLIWLRPYMDKR  341

Query  528  TNIYNITIAAINFVNAVFLLFFSEVFNQPGIVTGVMGVVFFVYNAVFSLVLLILVLIASI  587
            TN++NI I+ +N +NA+ LLFFSE F QP IVT VMGVVFFV NA F+LVLLIL+++ +I
Sbjct  342  TNVFNIAISVVNVLNAILLLFFSEEFGQPRIVTTVMGVVFFVINAAFTLVLLILIIVNAI  401

Query  588  YAIVSKNPDTRYQPMRDDRGSFI  610
             A+ SKNPD RY+PM+DDR SF+
Sbjct  402  IALFSKNPDRRYRPMKDDRRSFL  424


>CDD:434037 pfam14558, TRP_N, ML-like domain.  This domain is distantly similar 
to pfam02221 and conserves its pattern of conserved cysteines. 
This suggests that this domain may be involved in 
lipid binding.
Length=137

 Score = 214 bits (547),  Expect = 1e-66, Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 98/138 (71%), Gaps = 1/138 (1%)

Query  26   IESNALNLCQDSSNFTATFFSVTFTPNNRSLAFAFDGVAAISGKVTAELVLTAYGYEALR  85
            + + +L+ C D+S FTA++F VT+TP+NR++ F  DG ++ISG VTA+L +TAYGY+   
Sbjct  1    LYTTSLSTCMDNSQFTASYFDVTYTPDNRTVTFNVDGTSSISGNVTADLSVTAYGYQIYN  60

Query  86   KELDPCQMNLAGLCPMNAGPIDVPSANIIVSEDVAKQIPGIAYTVPDLDAKVRIYINSTE  145
            K  DPC +N+ GLCP+  GPID    N  +  D   QIPGIAYT+PDLDA VR+ I ST 
Sbjct  61   KTFDPCDLNVKGLCPLPPGPIDASG-NQPIPADYVSQIPGIAYTIPDLDATVRVRIYSTG  119

Query  146  TRKSITCIEASLSNGKTV  163
            T   I C++A+L+NGKTV
Sbjct  120  TGTEIACVQATLTNGKTV  137



Lambda      K        H        a         alpha
   0.323    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 912380304


Query= TCONS_00031461

Length=378


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00035560

Length=277


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 307940896


Query= TCONS_00031462

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00031460

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00031463

Length=247


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00031464

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00031465

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:394979 pfam00022, Actin, Actin                                    311     3e-106


>CDD:394979 pfam00022, Actin, Actin.  
Length=407

 Score = 311 bits (800),  Expect = 3e-106, Method: Composition-based stats.
 Identities = 120/285 (42%), Positives = 157/285 (55%), Gaps = 39/285 (14%)

Query  8    NAPIVIDNGSGTIRAGFAGEEIPSCFFPSFVGRPKHPRVMAGGLEGDVFIGQRAQELRGL  67
             + +VIDNGS T RAGFAGE+ P    PS VG+P+  +V A       ++G  A   R  
Sbjct  1    VSALVIDNGSHTTRAGFAGEDAPKAVIPSCVGKPRGTKVEA---ANKYYVGDEALTYRPG  57

Query  68   LKIRYPLEHGIVTDWDDMEKIWHYVYENELKTLPEEHPVLLTEPPLNPRKNRDIAAQIMF  127
            +++R P+E GIV DWD ME+IW +V + EL+  PEEHP+LLTEPP NP  NR+ AA+IMF
Sbjct  58   MEVRSPVEDGIVVDWDAMEEIWEHVLKEELQVDPEEHPLLLTEPPWNPPANREKAAEIMF  117

Query  128  ETFNVPALYTSIQAVLSLYASGRTTGVVLDSGDGVSHAVPVFEGFAIPNSIRRIDVAGRD  187
            E F VPALY +   VLS +ASGRTTG+V+DSG GV+  VPV +G+ +  +IRR D+ G  
Sbjct  118  EKFGVPALYLAKNPVLSAFASGRTTGLVVDSGAGVTSVVPVHDGYVLQKAIRRSDLGGDF  177

Query  188  VTEQLQLLLR------------------------------KNGHVLHTSAEKEVVRMIKE  217
            +T+ L+ LLR                                 +   T  E+ V+  IKE
Sbjct  178  LTDYLRELLRSRNIEITPRYLIKSKKPGDPAPAVTKRELPDTTYSYKTYQERRVLEEIKE  237

Query  218  KVCYVSLDPKREEKDWMNSYHKSETKAVDYVLPDGHKIKVSPSTF  262
             VCYVS DP  +E         S      Y LPDG  I +    F
Sbjct  238  SVCYVSDDPFGDETT------SSSIPTRVYELPDGSTIILGAERF  276



Lambda      K        H        a         alpha
   0.319    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00031466

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00035561

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432408 pfam12223, DUF3602, Protein of unknown function (DUF36...  103     7e-30


>CDD:432408 pfam12223, DUF3602, Protein of unknown function (DUF3602).  This 
domain family is found in eukaryotes, and is typically between 
78 and 89 amino acids in length.
Length=80

 Score = 103 bits (259),  Expect = 7e-30, Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query  33   NVISLKNTKTTDSQTATGPASLTRLDSNVPSTFKSGRGGAGNVHSSS-ERAIFSFDEELE  91
            N+       T      TGP       S   + F +GRGGAGN+HSS  ER   SFDE++E
Sbjct  1    NIGPDDTVYTDGEIVRTGPQGSHTDGS--RTAFSTGRGGAGNIHSSPGERPTLSFDEDVE  58

Query  92   RELRR---AAPVYHVGRGGAGN  110
             E  R    A  YHVGRGGAGN
Sbjct  59   PEAARRKEDAEDYHVGRGGAGN  80



Lambda      K        H        a         alpha
   0.315    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00031467

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463002 pfam10213, MRP-S28, Mitochondrial ribosomal subunit pr...  152     1e-48


>CDD:463002 pfam10213, MRP-S28, Mitochondrial ribosomal subunit protein. 
 This is a conserved region of approx. 125 residues of one of 
the proteins that makes up the small subunit of the mitochondrial 
ribosome. In Saccharomyces cerevisiae the protein is 
MRP-S24 whereas in humans it is MRP-S28. The human mitochondrial 
ribosome has 29 distinct proteins in the small subunit 
and these have homologs in, for example, Drosophila melanogaster, 
Caenorhabditis elegans, and in the genomes of several 
fungi.
Length=126

 Score = 152 bits (385),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 61/111 (55%), Positives = 72/111 (65%), Gaps = 9/111 (8%)

Query  1    MGEQHPAESKVVVELASKDLVPKYLSEKQRQTFLKLVGTRYNPDTDIVRMSCEKFTTRAQ  60
            MGE+HPA  KVV+E+   DL    L EKQ      L G RYNP+TDI++MS EKF + AQ
Sbjct  19   MGEEHPASRKVVLEVKPADL---GLEEKQLHKLKLLAGPRYNPETDIIKMSSEKFESAAQ  75

Query  61   NKRYLGDIVNTLIKEAKE-GDSFEDIPLDLRHHKPK-----TQLRFPEEWA  105
            NKRYLGDI+  L+KEAK+  D F D+PLD RHHK K         FPEEW 
Sbjct  76   NKRYLGDILEKLLKEAKDLTDDFSDVPLDTRHHKAKKRRKRKDYEFPEEWK  126



Lambda      K        H        a         alpha
   0.314    0.129    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00031469

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463002 pfam10213, MRP-S28, Mitochondrial ribosomal subunit pr...  184     3e-58


>CDD:463002 pfam10213, MRP-S28, Mitochondrial ribosomal subunit protein. 
 This is a conserved region of approx. 125 residues of one of 
the proteins that makes up the small subunit of the mitochondrial 
ribosome. In Saccharomyces cerevisiae the protein is 
MRP-S24 whereas in humans it is MRP-S28. The human mitochondrial 
ribosome has 29 distinct proteins in the small subunit 
and these have homologs in, for example, Drosophila melanogaster, 
Caenorhabditis elegans, and in the genomes of several 
fungi.
Length=126

 Score = 184 bits (468),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 74/129 (57%), Positives = 86/129 (67%), Gaps = 9/129 (7%)

Query  189  PFTLPPETHILRFRYTTYMGEQHPAESKVVVELASKDLVPKYLSEKQRQTFLKLVGTRYN  248
            PF  PPET  LRFRYT+YMGE+HPA  KVV+E+   DL    L EKQ      L G RYN
Sbjct  1    PFKPPPETQPLRFRYTSYMGEEHPASRKVVLEVKPADL---GLEEKQLHKLKLLAGPRYN  57

Query  249  PDTDIVRMSCEKFTTRAQNKRYLGDIVNTLIKEAKE-GDSFEDIPLDLRHHKPK-----T  302
            P+TDI++MS EKF + AQNKRYLGDI+  L+KEAK+  D F D+PLD RHHK K      
Sbjct  58   PETDIIKMSSEKFESAAQNKRYLGDILEKLLKEAKDLTDDFSDVPLDTRHHKAKKRRKRK  117

Query  303  QLRFPEEWA  311
               FPEEW 
Sbjct  118  DYEFPEEWK  126



Lambda      K        H        a         alpha
   0.316    0.133    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00031468

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463002 pfam10213, MRP-S28, Mitochondrial ribosomal subunit pr...  184     3e-58


>CDD:463002 pfam10213, MRP-S28, Mitochondrial ribosomal subunit protein. 
 This is a conserved region of approx. 125 residues of one of 
the proteins that makes up the small subunit of the mitochondrial 
ribosome. In Saccharomyces cerevisiae the protein is 
MRP-S24 whereas in humans it is MRP-S28. The human mitochondrial 
ribosome has 29 distinct proteins in the small subunit 
and these have homologs in, for example, Drosophila melanogaster, 
Caenorhabditis elegans, and in the genomes of several 
fungi.
Length=126

 Score = 184 bits (468),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 74/129 (57%), Positives = 86/129 (67%), Gaps = 9/129 (7%)

Query  189  PFTLPPETHILRFRYTTYMGEQHPAESKVVVELASKDLVPKYLSEKQRQTFLKLVGTRYN  248
            PF  PPET  LRFRYT+YMGE+HPA  KVV+E+   DL    L EKQ      L G RYN
Sbjct  1    PFKPPPETQPLRFRYTSYMGEEHPASRKVVLEVKPADL---GLEEKQLHKLKLLAGPRYN  57

Query  249  PDTDIVRMSCEKFTTRAQNKRYLGDIVNTLIKEAKE-GDSFEDIPLDLRHHKPK-----T  302
            P+TDI++MS EKF + AQNKRYLGDI+  L+KEAK+  D F D+PLD RHHK K      
Sbjct  58   PETDIIKMSSEKFESAAQNKRYLGDILEKLLKEAKDLTDDFSDVPLDTRHHKAKKRRKRK  117

Query  303  QLRFPEEWA  311
               FPEEW 
Sbjct  118  DYEFPEEWK  126



Lambda      K        H        a         alpha
   0.316    0.133    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0782    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00031470

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463002 pfam10213, MRP-S28, Mitochondrial ribosomal subunit pr...  184     3e-58


>CDD:463002 pfam10213, MRP-S28, Mitochondrial ribosomal subunit protein. 
 This is a conserved region of approx. 125 residues of one of 
the proteins that makes up the small subunit of the mitochondrial 
ribosome. In Saccharomyces cerevisiae the protein is 
MRP-S24 whereas in humans it is MRP-S28. The human mitochondrial 
ribosome has 29 distinct proteins in the small subunit 
and these have homologs in, for example, Drosophila melanogaster, 
Caenorhabditis elegans, and in the genomes of several 
fungi.
Length=126

 Score = 184 bits (468),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 74/129 (57%), Positives = 86/129 (67%), Gaps = 9/129 (7%)

Query  189  PFTLPPETHILRFRYTTYMGEQHPAESKVVVELASKDLVPKYLSEKQRQTFLKLVGTRYN  248
            PF  PPET  LRFRYT+YMGE+HPA  KVV+E+   DL    L EKQ      L G RYN
Sbjct  1    PFKPPPETQPLRFRYTSYMGEEHPASRKVVLEVKPADL---GLEEKQLHKLKLLAGPRYN  57

Query  249  PDTDIVRMSCEKFTTRAQNKRYLGDIVNTLIKEAKE-GDSFEDIPLDLRHHKPK-----T  302
            P+TDI++MS EKF + AQNKRYLGDI+  L+KEAK+  D F D+PLD RHHK K      
Sbjct  58   PETDIIKMSSEKFESAAQNKRYLGDILEKLLKEAKDLTDDFSDVPLDTRHHKAKKRRKRK  117

Query  303  QLRFPEEWA  311
               FPEEW 
Sbjct  118  DYEFPEEWK  126



Lambda      K        H        a         alpha
   0.316    0.133    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 456682548


Query= TCONS_00031473

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00031471

Length=1311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:434724 pfam15446, zf-PHD-like, PHD/FYVE-zinc-finger like doma...  326     8e-105
CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  246     3e-74 
CDD:436598 pfam18585, zf-CCCH_6, Chromatin remodeling factor Mit1...  115     2e-31 
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  95.7    7e-24 


>CDD:434724 pfam15446, zf-PHD-like, PHD/FYVE-zinc-finger like domain.  This 
family appears to be a combination domain of several consecutive 
zinc-binding regions.
Length=170

 Score = 326 bits (839),  Expect = 8e-105, Method: Composition-based stats.
 Identities = 97/171 (57%), Positives = 119/171 (70%), Gaps = 7/171 (4%)

Query  108  CEVCGIEGDDGLRGPLVFCQGCTSAYHQACLGPRSNRDHLVTKVADEQFVLQCRRCIGVS  167
            C+ CG  G D  +GPLV+CQGC+ +YH+ CLGPRS+R+HLVTKV ++ FVLQCRRCIG++
Sbjct  1    CDTCG-GGGDRNKGPLVYCQGCSLSYHKVCLGPRSSREHLVTKVGEDDFVLQCRRCIGIA  59

Query  168  HAKDPISPHQGCCMKCNNQGKMSKPLRERLTPKQEQQIRQDNGGKDPITPVGMTTVNNVD  227
            H KDP +P  G C  C   G    P R R T KQE+++R++NGG DPITPV    +NN D
Sbjct  60   HKKDPTAPRHGKCQGCKEPGPSCAPFRPRKTAKQEEKLREENGGVDPITPVDPDLINNAD  119

Query  228  NVLFRCTACHRAFHFEHLPPISDMTDDP------ATARFEEYSYTWKCHDC  272
            NVLFRCT+C RA+HFEHLPP SD  D P         R +EYS  WKC DC
Sbjct  120  NVLFRCTSCKRAWHFEHLPPRSDDADSPDDDDDLREQRLKEYSRDWKCKDC  170


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 246 bits (631),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 111/304 (37%), Positives = 157/304 (52%), Gaps = 28/304 (9%)

Query  478  YQKDGVNWLYYMW-FKQQNAILADEMGLGKTIQVIGFFATLIQYHKCW--PFLVVVPNST  534
            YQ +GVNW+  +     +  ILADEMGLGKT+Q I     L    K W  P L+VVP S 
Sbjct  1    YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGPTLIVVPLSL  60

Query  535  CPNWRKEIKSWV--PSIRVVTYYGSALARKLAQEHELFSQGEPDLRCH-VVVTSYETIID  591
              NW  E + WV  P++RVV  +G+   ++  +    F      L    VV+T+YET+  
Sbjct  61   LHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNF------LADFDVVITTYETLRK  114

Query  592  DASRRVLMKIPWAGLVVDEGQRLKNDKSQLYESLSRFKFPFKLLLTGTPLQNNTRELFNL  651
               + +L K+ W  +V+DEG RLKN KS+L ++L   K   + +LTGTPLQNN  EL+ L
Sbjct  115  H--KELLKKVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQNNLEELWAL  172

Query  652  LQF--CDPTKDAARLDEKYG-----TLSKENIPELHNMIRPFFLRRTKAQVLTFLPPIAQ  704
            L F    P    +     +         K+ +  LH +++PF LRRTK  V   LPP  +
Sbjct  173  LNFLRPGPFGSLSTFRNWFDRPIERGGGKKGVSRLHKLLKPFLLRRTKKDVEKSLPPKVE  232

Query  705  IIVPVSMSVVQKKLYKSILAKNPQLIKAIFQRNNNSEGVKQADRHNLNNILMQLRKCLCH  764
             I+   +S +Q+KLY++ L     L K +        G +      L NILM+LRK   H
Sbjct  233  YILFCRLSKLQRKLYQTFL-----LKKDLNAIKTGEGGREIKAS--LLNILMRLRKICNH  285

Query  765  PFVY  768
            P + 
Sbjct  286  PGLI  289


>CDD:436598 pfam18585, zf-CCCH_6, Chromatin remodeling factor Mit1 C-terminal 
Zn finger 2.  The Snf2/Hdac Repressive Complex (SHREC) 
is the fission yeast nucleosome remodeling and deacetylation 
(NuRD) equivalent and plays a major role in transcriptional 
gene silencing (TGS) within S. pombe heterochromatin. SHREC 
consists of the chromatin remodeler Mit1, the HDAC Clr3, and 
Clr1 and Clr2 proteins. The Mit1 C terminus contains two zinc 
binding motifs (CCHC zinc fingers) at the C-terminus onto 
which the alpha helices from both Clr1 and Mit1 pack. The 
Mit1 chromatin remodeler uses its C-terminal domain to intimately 
bind to the N-terminal half of Clr1 to integrate into 
the SHREC complex. This is entry represents the second C-terminal 
zinc-binding domain found on Mit-1.
Length=53

 Score = 115 bits (290),  Expect = 2e-31, Method: Composition-based stats.
 Identities = 41/53 (77%), Positives = 46/53 (87%), Gaps = 0/53 (0%)

Query  1194  EHCGLCGLAHYGIARTCPHLRSETQVARMLDALRHSTEDGELIEKAKKYLQGI  1246
             EHCGLCGLAH+G  RTCPHL SETQV RMLDAL+ STE  EL+E+AKKYL+GI
Sbjct  1     EHCGLCGLAHFGGGRTCPHLNSETQVRRMLDALKESTEPRELVEQAKKYLRGI  53


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 95.7 bits (239),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 6/115 (5%)

Query  791  GKLKLLEIMLPKLKQRGHRVLIFSQFLDNLDIVEDFLDGLGLLHRRLDGRMTSLEKQKRI  850
             KL+ L  +L K  +RG +VLIFSQ    L+  E  L+  G+   RL G ++  E+++ +
Sbjct  1    EKLEALLELLKK--ERGGKVLIFSQTKKTLEA-ELLLEKEGIKVARLHGDLSQEEREEIL  57

Query  851  DEYNADNSPYFAFLLSTRSGGVGINLATADTVIIMDPDFNPHQDMQALSRAHRIG  905
            +++          L++T     G++L   D VI  D  +NP   +Q + RA R G
Sbjct  58   EDFRKGKID---VLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.318    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1669815800


Query= TCONS_00035563

Length=359


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00031472

Length=404


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 489302730


Query= TCONS_00035564

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425768 pfam00588, SpoU_methylase, SpoU rRNA Methylase family....  131     5e-37


>CDD:425768 pfam00588, SpoU_methylase, SpoU rRNA Methylase family.  This 
family of proteins probably use S-AdoMet.
Length=142

 Score = 131 bits (332),  Expect = 5e-37, Method: Composition-based stats.
 Identities = 56/165 (34%), Positives = 84/165 (51%), Gaps = 25/165 (15%)

Query  300  PVVLLLDGITDTGNLGGIIRSAYYLGIDAIVFAGRNCA-PLSPITIKASAGAAENMPLIK  358
            P+V++LD I D GNLG IIR+A   G D ++      A P +P  I+ASAGA  ++PL+ 
Sbjct  1    PLVVVLDNIQDPGNLGAIIRTAAAFGADGLILVEPRSADPYNPKAIRASAGALFHLPLVV  60

Query  359  VSNEVDFIQQSKANGWRFFAADAPLPGTRYPDTTGDIDLTRNAVTQAPSVIMLGSEGSGL  418
            V N  + ++  K  G+   A    L G        +ID  +         ++ G+EG+GL
Sbjct  61   VDNLEEALKDLKEAGYAVVATS--LGGKSLY----EIDFPK------KVALVFGNEGTGL  108

Query  419  SGHIKSHADSIVSIPGARNATEWGYEKDPARVDSLNVSVAAAILM  463
            S  +    D +V IP + +            V+SLNV+VAAAI +
Sbjct  109  SNEVLELCDRLVRIPMSGD------------VESLNVAVAAAIAL  141



Lambda      K        H        a         alpha
   0.316    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595027938


Query= TCONS_00031474

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425768 pfam00588, SpoU_methylase, SpoU rRNA Methylase family....  131     5e-37


>CDD:425768 pfam00588, SpoU_methylase, SpoU rRNA Methylase family.  This 
family of proteins probably use S-AdoMet.
Length=142

 Score = 131 bits (332),  Expect = 5e-37, Method: Composition-based stats.
 Identities = 56/165 (34%), Positives = 84/165 (51%), Gaps = 25/165 (15%)

Query  300  PVVLLLDGITDTGNLGGIIRSAYYLGIDAIVFAGRNCA-PLSPITIKASAGAAENMPLIK  358
            P+V++LD I D GNLG IIR+A   G D ++      A P +P  I+ASAGA  ++PL+ 
Sbjct  1    PLVVVLDNIQDPGNLGAIIRTAAAFGADGLILVEPRSADPYNPKAIRASAGALFHLPLVV  60

Query  359  VSNEVDFIQQSKANGWRFFAADAPLPGTRYPDTTGDIDLTRNAVTQAPSVIMLGSEGSGL  418
            V N  + ++  K  G+   A    L G        +ID  +         ++ G+EG+GL
Sbjct  61   VDNLEEALKDLKEAGYAVVATS--LGGKSLY----EIDFPK------KVALVFGNEGTGL  108

Query  419  SGHIKSHADSIVSIPGARNATEWGYEKDPARVDSLNVSVAAAILM  463
            S  +    D +V IP + +            V+SLNV+VAAAI +
Sbjct  109  SNEVLELCDRLVRIPMSGD------------VESLNVAVAAAIAL  141



Lambda      K        H        a         alpha
   0.316    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595027938


Query= TCONS_00031475

Length=956
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  389     3e-129
CDD:462681 pfam09111, SLIDE, SLIDE. The SLIDE domain adopts a sec...  186     7e-56 
CDD:430414 pfam09110, HAND, HAND. The HAND domain adopts a second...  168     1e-49 
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  103     2e-26 


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 389 bits (1002),  Expect = 3e-129, Method: Composition-based stats.
 Identities = 146/289 (51%), Positives = 189/289 (65%), Gaps = 7/289 (2%)

Query  70   YQIAGLNWLVSLHEN-GISGILADEMGLGKTLQTISFLGYLRHVCGITG-PHLVAVPKST  127
            YQI G+NW++SL  N G  GILADEMGLGKTLQTIS L YL+HV    G P L+ VP S 
Sbjct  1    YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGPTLIVVPLSL  60

Query  128  LDNWKREFHKWT--PDVNVLVLQGDKEERHKLINERLLDEDFDVCVTSYEMVLREKAHLK  185
            L NW  EF +W   P + V+VL G+K  + +  N+     DFDV +T+YE + + K  LK
Sbjct  61   LHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYETLRKHKELLK  120

Query  186  KFAWEYIIIDEAHRIKNEESSLAQIIRVFNSRNRLLITGTPLQNNLHELWALLNFLLPDV  245
            K  W  I++DE HR+KN +S L++ ++   +RNR ++TGTPLQNNL ELWALLNFL P  
Sbjct  121  KVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQNNLEELWALLNFLRPGP  180

Query  246  FGDSEAFDQWFS--SQDADQDTVVQQLHRVLRPFLLRRVKSDVEKSLLPKKEVNLYVPMS  303
            FG    F  WF    +       V +LH++L+PFLLRR K DVEKSL PK E  L+  +S
Sbjct  181  FGSLSTFRNWFDRPIERGGGKKGVSRLHKLLKPFLLRRTKKDVEKSLPPKVEYILFCRLS  240

Query  304  EMQVKWYQ-KILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLF  351
            ++Q K YQ  +L+KD++A+    G RE K  LLNI+M+LRK CNHP L 
Sbjct  241  KLQRKLYQTFLLKKDLNAIKTGEGGREIKASLLNILMRLRKICNHPGLI  289


>CDD:462681 pfam09111, SLIDE, SLIDE.  The SLIDE domain adopts a secondary 
structure comprising a main core of three alpha-helices. It 
has a role in DNA binding, contacting DNA target sites similar 
to c-Myb (pfam00249) repeats or homeodomains.
Length=116

 Score = 186 bits (475),  Expect = 7e-56, Method: Composition-based stats.
 Identities = 72/116 (62%), Positives = 88/116 (76%), Gaps = 1/116 (1%)

Query  800  KYIRIIEQGEEKLRKMSHQRKMLRKKMEMYRVPLQQLKINYTVSTTNKKVYTEEEDRFLL  859
            KYI+ IE+GE+K+ K+  Q+++LR+K+  Y+ PLQ+LKINY  +   K  YTEEEDRFLL
Sbjct  2    KYIKQIERGEKKIEKLKEQQELLRRKISQYKNPLQELKINYPPNNKGKT-YTEEEDRFLL  60

Query  860  VMLDKYGVDGEGLYEKIRDEIRESPLFRFDWFFLSRTPVEIGRRCTTLLNTVAKEF  915
             ML KYG   E LYEKI+ EIRESPLFRFDWFF SRTP E+ RRC TLL  + KEF
Sbjct  61   CMLYKYGYGNEDLYEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLLKLIEKEF  116


>CDD:430414 pfam09110, HAND, HAND.  The HAND domain adopts a secondary structure 
consisting of four alpha helices, three of which (H2, 
H3, H4) form an L-like configuration. Helix H2 runs antiparallel 
to helices H3 and H4, packing closely against helix H4, 
whilst helix H1 reposes in the concave surface formed by 
these three helices and runs perpendicular to them. The domain 
confers DNA and nucleosome binding properties to the protein.
Length=110

 Score = 168 bits (429),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 66/110 (60%), Positives = 80/110 (73%), Gaps = 4/110 (4%)

Query  637  SIDKYYRQALATGGRTAETKPKVPRAPKQISIHDWQFFPPGLQELQEKETAYFHKEIGYK  696
            S+D YY+  L TGG+ + TKPK PRAPKQI+I D QFFPP L+ELQEKE  Y+ K+IGYK
Sbjct  1    SVDNYYKDVLGTGGKKSTTKPKAPRAPKQINIQDHQFFPPRLKELQEKEQLYYKKKIGYK  60

Query  697  AQLPEGPEEELSEREAERD----LEQQEIDNAVPLTEEEQAEKARMSEEG  742
              L +G EE+  E E ER+    LEQ+EIDNA PLTEEE+AEK  +  EG
Sbjct  61   VTLDDGKEEDGEEFEEEREAKRKLEQEEIDNAEPLTEEEEAEKEELLSEG  110


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 103 bits (258),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 6/115 (5%)

Query  371  GKMVILDKLLARMQKQGSRVLIFSQMSRVLDILEDYCVFRDYKYCRIDGTTAHEDRIAAI  430
             K+  L +LL +  ++G +VLIFSQ  + L+  E        K  R+ G  + E+R   +
Sbjct  1    EKLEALLELLKK--ERGGKVLIFSQTKKTLEA-ELLLEKEGIKVARLHGDLSQEEREEIL  57

Query  431  DEYNKPGSDKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIG  485
            +++ K    K   L+ T     G++L   D+V+ YD  WNP + +Q + RA R G
Sbjct  58   EDFRK---GKIDVLVATDVAERGLDLPDVDLVINYDLPWNPASYIQRIGRAGRAG  109



Lambda      K        H        a         alpha
   0.316    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1217653360


Query= TCONS_00031476

Length=272


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00031477

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family. This...  167     1e-49


>CDD:425500 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family 
of dehydrogenases act on aldehyde substrates. Members use 
NADP as a cofactor. The family includes the following members: 
The prototypical members are the aldehyde dehydrogenases 
EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. 
Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase 
EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase 
EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. 
Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde 
dehydrogenase EC:1.2.1.41. This family also includes 
omega crystallin, an eye lens protein from squid and 
octopus that has little aldehyde dehydrogenase activity.
Length=459

 Score = 167 bits (425),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 73/216 (34%), Positives = 113/216 (52%), Gaps = 11/216 (5%)

Query  4    IVEASLDPSCYTLVQG-GPTEVQALL-AERWDKIFFTGGANVGRIIAKAAAPHLTPVVLE  61
              EA L      +V G G    +AL+      K+ FTG   VGR IA+AAA +L  V LE
Sbjct  176  FEEAGLPAGVLNVVTGSGAEVGEALVEHPDVRKVSFTGSTAVGRHIAEAAAQNLKRVTLE  235

Query  62   LGGINPAIITKNANPRLVARRMLWGKTLNAGQICTSQNYLLVDRAILPAVVEEFKKAYKE  121
            LGG NP I+ ++A+        ++G   NAGQ+CT+ + LLV  +I    VE+  +A K+
Sbjct  236  LGGKNPLIVLEDADLDAAVEAAVFGAFGNAGQVCTATSRLLVHESIYDEFVEKLVEAAKK  295

Query  122  FYPQGAKASP--DYSRIINEGAFRKLKSMIDNSK---GKILMGGT-MDENERFIEPTLVQ  175
                G    P  D   +I++    ++   ++++K    K+L GG    +N  F+EPT++ 
Sbjct  296  L-KVGDPLDPDTDMGPLISKAQLERVLKYVEDAKEEGAKLLTGGEAGLDNGYFVEPTVL-  353

Query  176  VDSPDDSLIVQ-ESFGPLIPILPVDNLEEAVNIANS  210
             +   D  I Q E FGP++ ++   + EEA+ IAN 
Sbjct  354  ANVTPDMRIAQEEIFGPVLSVIRFKDEEEAIEIAND  389



Lambda      K        H        a         alpha
   0.316    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00031479

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:278869 pfam00463, ICL, Isocitrate lyase family                    101     2e-26


>CDD:278869 pfam00463, ICL, Isocitrate lyase family.  
Length=526

 Score = 101 bits (252),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 50/107 (47%), Positives = 64/107 (60%), Gaps = 15/107 (14%)

Query  14   DVQAVKAWWKDSRWRYTKRPYTAEQIVAKRGNLKIHYPSNDQSKKLWKILESNFEVRRFE  73
            +V  VK WW DSRWR TKRPYTAE IV+KRGNLKI Y SN Q+KKLWK+LE++F      
Sbjct  1    EVAEVKKWWSDSRWRKTKRPYTAEDIVSKRGNLKIEYASNVQAKKLWKLLENHF------  54

Query  74   RSDRATSLTFILSRKKLPVSPMA-------VWNQQCSPRWPSTSTPS  113
             ++   S TF  +   + V+ MA       V   QCS    +++ P 
Sbjct  55   -ANGTASFTF-GALDPVQVTQMAKYLDTIYVSGWQCSSTASTSNEPG  99



Lambda      K        H        a         alpha
   0.318    0.132    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00031478

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:278869 pfam00463, ICL, Isocitrate lyase family                    563     0.0  


>CDD:278869 pfam00463, ICL, Isocitrate lyase family.  
Length=526

 Score = 563 bits (1453),  Expect = 0.0, Method: Composition-based stats.
 Identities = 230/313 (73%), Positives = 263/313 (84%), Gaps = 4/313 (1%)

Query  8    RISADKTAGTDLLAIARTDSEAATLITSTIDHRDHAFIVGSTNPNLQPLNDLMLAGEQAG  67
            R  AD   G+DLLA+ARTDSEAATLITSTID RDH FI+G+TNP+L+PL DLM+  E AG
Sbjct  215  RAQAD-IMGSDLLAVARTDSEAATLITSTIDTRDHYFILGATNPDLEPLADLMVQAEAAG  273

Query  68   KTGEELQAIEDQWIAQAGLKLFDDAVVDTIKAGVHVNKDALIKEYLTAAKGK---SNSEA  124
            K G ELQAIED+W+ +AGLKLF +AVVD I+ G   NK  LIK++    K     SN EA
Sbjct  274  KNGAELQAIEDEWLRKAGLKLFHEAVVDEIERGNLSNKKELIKKFTHKVKPLSCTSNREA  333

Query  125  RAIAKGITGVDIYWDWDAPRTREGYYRYQGGTQCAINRAVAYAPFADLIWMESKLPDYAQ  184
            RAIAK + G DI++DW+ PRTREGYYRYQGGTQC++NR  A+AP+ADLIWMESKLPDYAQ
Sbjct  334  RAIAKELLGKDIFFDWELPRTREGYYRYQGGTQCSVNRGRAFAPYADLIWMESKLPDYAQ  393

Query  185  AKEFADGVHAVWPEQKLAYNLSPSFNWKKAMPREEQETYIKRLGALGYAWQFITLAGLHT  244
            AKEFA+GV A WP+Q LAYNLSPSFNWKKAM R+EQETYIKRL  LGY WQFITLAGLHT
Sbjct  394  AKEFAEGVKAKWPDQWLAYNLSPSFNWKKAMSRDEQETYIKRLAKLGYVWQFITLAGLHT  453

Query  245  TALISDQFARAYAKQGMRAYGELVQEPEMEQGVDVVTHQKWSGANYVDNMLKMLTGGVSS  304
             ALISD FA+AYAK+GMRAYGELVQ+PE++ GVDVV HQKWSGANY+D +LKM+TGGVSS
Sbjct  454  NALISDTFAKAYAKRGMRAYGELVQQPEIDNGVDVVKHQKWSGANYIDGLLKMVTGGVSS  513

Query  305  TAAMGKGVTEDQF  317
            TAAMGKGVTEDQF
Sbjct  514  TAAMGKGVTEDQF  526



Lambda      K        H        a         alpha
   0.316    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00031481

Length=560
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395961 pfam01204, Trehalase, Trehalase. Trehalase (EC:3.2.1.2...  642     0.0  


>CDD:395961 pfam01204, Trehalase, Trehalase.  Trehalase (EC:3.2.1.28) is 
known to recycle trehalose to glucose. Trehalose is a physiological 
hallmark of heat-shock response in yeast and protects 
of proteins and membranes against a variety of stresses. This 
family is found in conjunction with pfam07492 in fungi.
Length=509

 Score = 642 bits (1659),  Expect = 0.0, Method: Composition-based stats.
 Identities = 257/549 (47%), Positives = 310/549 (56%), Gaps = 57/549 (10%)

Query  13   KDYGRKHIILDEARLSENPVARLSRLIKNSFWDALTRRIDGSNIEVAGRDPKDWTEDPRP  72
            K +  +   +DEARL+E    R+ RLI+  FW ALTRRIDG ++     D  D   D  P
Sbjct  1    KLFPDQKTFVDEARLNE--PNRILRLIRAQFWRALTRRIDGEDLRAFVEDYFDEPGDELP  58

Query  73   RIYVPHGAPEQFEYYKGIAKEHPELRLDVQMLEENITPDYVRDLNSKPGLLALAMQKKYN  132
            RI VP+   EQ E+ + I  E P+LRL V+ L     P  VR +N KPGLL  A      
Sbjct  59   RI-VPYDEKEQPEFLQKI--EDPDLRLWVEELNALW-PALVRKINKKPGLLPEASSLLPL  114

Query  133  ESTQKTECVGVPFVVPGGRFNELYGWDSYMESLGLLVSNRVDLAKAMVINFCFCIKHYGK  192
             +         PFVVPGGRF ELY WDSY   LGLL S   DLAK MV NF + I+ YG 
Sbjct  115  PN---------PFVVPGGRFRELYYWDSYFTILGLLESGMHDLAKGMVENFIYLIETYGH  165

Query  193  ILNANRSYYLTRSQPPFLTDMALRVYERIKNEPDAMDFLRNATLAAIKEYYSVWTAAPRY  252
            I N NRSYYL RSQPPFLTDM L VYE+        D L    LAA+K+ Y+ W A PR 
Sbjct  166  IPNGNRSYYLNRSQPPFLTDMVLLVYEKT-----EDDALLRRYLAALKKEYAFWMANPRL  220

Query  253  DELSGLS-RYRPEGRGVPPETEPTHFTHILTPYAEKHGMTFKEFVQAYNEGRVQEPELDE  311
            D ++GLS  Y     GVPPET           YAEK     KE  +AYN   ++      
Sbjct  221  DPVTGLSDGYLLNRYGVPPETPRPESYLEDVEYAEKLP---KERPKAYNYRDLKAGAESG  277

Query  312  YFLHDRAVRESGHDTSYRLERVCANLATVDLNSLLYKYEVDIARIIRTYFKDRLEIPPEF  371
            +    R VRE GHDT Y  E    +L  VDLN+LLYKYE DIA     +F D L      
Sbjct  278  WDFSSRWVRE-GHDTGYLAEIRTTSLVPVDLNALLYKYEKDIA-----FFCDVLG-----  326

Query  372  RTESTKDIESESSSVWDRRARRRKVRMDTYLWDEEKGMYFDYDTVLQKRTTYESATTFWA  431
                    +SE+S++W+ RA +R++ +D YLW+EE G++FDYD   +K+T Y SAT FW 
Sbjct  327  --------DSETSAIWEERAEQRRLAIDKYLWNEEAGVWFDYDLKKRKQTNYFSATNFWP  378

Query  432  MWAGLATPHQAAELVRKALPRFEVYGGLVSGTEESRGAVGLDRPNRQWDYPYGWAPQQML  491
            +WAGLA+P QA  +V K LP+ E  G LV      R    LD   +QWDYP GWAP Q L
Sbjct  379  LWAGLASPDQAK-MVAKVLPKLEESGLLVF--PGGRPTSLLD-SGQQWDYPNGWAPLQWL  434

Query  492  AWTGLLRYGYQEEAERLAYKWLFMITKAFVDFNGVVVEKYDVTRPIDPHRVDAEYGNQGV  551
            A  GL RYGY E AERLAY+WLF  TKAFVD  G +VEKYDVTR         EYG  G 
Sbjct  435  AVEGLQRYGYDELAERLAYRWLFTNTKAFVDE-GKMVEKYDVTR-------GGEYG--GG  484

Query  552  DFKGAPREG  560
              +  P+EG
Sbjct  485  GGEYVPQEG  493



Lambda      K        H        a         alpha
   0.319    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 699392304


Query= TCONS_00031480

Length=606
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395961 pfam01204, Trehalase, Trehalase. Trehalase (EC:3.2.1.2...  644     0.0  


>CDD:395961 pfam01204, Trehalase, Trehalase.  Trehalase (EC:3.2.1.28) is 
known to recycle trehalose to glucose. Trehalose is a physiological 
hallmark of heat-shock response in yeast and protects 
of proteins and membranes against a variety of stresses. This 
family is found in conjunction with pfam07492 in fungi.
Length=509

 Score = 644 bits (1664),  Expect = 0.0, Method: Composition-based stats.
 Identities = 257/549 (47%), Positives = 310/549 (56%), Gaps = 57/549 (10%)

Query  59   KDYGRKHIILDEARLSENPVARLSRLIKNSFWDALTRRIDGSNIEVAGRDPKDWTEDPRP  118
            K +  +   +DEARL+E    R+ RLI+  FW ALTRRIDG ++     D  D   D  P
Sbjct  1    KLFPDQKTFVDEARLNE--PNRILRLIRAQFWRALTRRIDGEDLRAFVEDYFDEPGDELP  58

Query  119  RIYVPHGAPEQFEYYKGIAKEHPELRLDVQMLEENITPDYVRDLNSKPGLLALAMQKKYN  178
            RI VP+   EQ E+ + I  E P+LRL V+ L     P  VR +N KPGLL  A      
Sbjct  59   RI-VPYDEKEQPEFLQKI--EDPDLRLWVEELNALW-PALVRKINKKPGLLPEASSLLPL  114

Query  179  ESTQKTECVGVPFVVPGGRFNELYGWDSYMESLGLLVSNRVDLAKAMVINFCFCIKHYGK  238
             +         PFVVPGGRF ELY WDSY   LGLL S   DLAK MV NF + I+ YG 
Sbjct  115  PN---------PFVVPGGRFRELYYWDSYFTILGLLESGMHDLAKGMVENFIYLIETYGH  165

Query  239  ILNANRSYYLTRSQPPFLTDMALRVYERIKNEPDAMDFLRNATLAAIKEYYSVWTAAPRY  298
            I N NRSYYL RSQPPFLTDM L VYE+        D L    LAA+K+ Y+ W A PR 
Sbjct  166  IPNGNRSYYLNRSQPPFLTDMVLLVYEKT-----EDDALLRRYLAALKKEYAFWMANPRL  220

Query  299  DELSGLS-RYRPEGRGVPPETEPTHFTHILTPYAEKHGMTFKEFVQAYNEGRVQEPELDE  357
            D ++GLS  Y     GVPPET           YAEK     KE  +AYN   ++      
Sbjct  221  DPVTGLSDGYLLNRYGVPPETPRPESYLEDVEYAEKLP---KERPKAYNYRDLKAGAESG  277

Query  358  YFLHDRAVRESGHDTSYRLERVCANLATVDLNSLLYKYEVDIARIIRTYFKDRLEIPPEF  417
            +    R VRE GHDT Y  E    +L  VDLN+LLYKYE DIA     +F D L      
Sbjct  278  WDFSSRWVRE-GHDTGYLAEIRTTSLVPVDLNALLYKYEKDIA-----FFCDVLG-----  326

Query  418  RTESTKDIESESSSVWDRRARRRKVRMDTYLWDEEKGMYFDYDTVLQKRTTYESATTFWA  477
                    +SE+S++W+ RA +R++ +D YLW+EE G++FDYD   +K+T Y SAT FW 
Sbjct  327  --------DSETSAIWEERAEQRRLAIDKYLWNEEAGVWFDYDLKKRKQTNYFSATNFWP  378

Query  478  MWAGLATPHQAAELVRKALPRFEVYGGLVSGTEESRGAVGLDRPNRQWDYPYGWAPQQML  537
            +WAGLA+P QA  +V K LP+ E  G LV      R    LD   +QWDYP GWAP Q L
Sbjct  379  LWAGLASPDQAK-MVAKVLPKLEESGLLVF--PGGRPTSLLD-SGQQWDYPNGWAPLQWL  434

Query  538  AWTGLLRYGYQEEAERLAYKWLFMITKAFVDFNGVVVEKYDVTRPIDPHRVDAEYGNQGV  597
            A  GL RYGY E AERLAY+WLF  TKAFVD  G +VEKYDVTR         EYG  G 
Sbjct  435  AVEGLQRYGYDELAERLAYRWLFTNTKAFVDE-GKMVEKYDVTR-------GGEYG--GG  484

Query  598  DFKGAPREG  606
              +  P+EG
Sbjct  485  GGEYVPQEG  493



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 768135992


Query= TCONS_00031482

Length=606
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395961 pfam01204, Trehalase, Trehalase. Trehalase (EC:3.2.1.2...  644     0.0  


>CDD:395961 pfam01204, Trehalase, Trehalase.  Trehalase (EC:3.2.1.28) is 
known to recycle trehalose to glucose. Trehalose is a physiological 
hallmark of heat-shock response in yeast and protects 
of proteins and membranes against a variety of stresses. This 
family is found in conjunction with pfam07492 in fungi.
Length=509

 Score = 644 bits (1664),  Expect = 0.0, Method: Composition-based stats.
 Identities = 257/549 (47%), Positives = 310/549 (56%), Gaps = 57/549 (10%)

Query  59   KDYGRKHIILDEARLSENPVARLSRLIKNSFWDALTRRIDGSNIEVAGRDPKDWTEDPRP  118
            K +  +   +DEARL+E    R+ RLI+  FW ALTRRIDG ++     D  D   D  P
Sbjct  1    KLFPDQKTFVDEARLNE--PNRILRLIRAQFWRALTRRIDGEDLRAFVEDYFDEPGDELP  58

Query  119  RIYVPHGAPEQFEYYKGIAKEHPELRLDVQMLEENITPDYVRDLNSKPGLLALAMQKKYN  178
            RI VP+   EQ E+ + I  E P+LRL V+ L     P  VR +N KPGLL  A      
Sbjct  59   RI-VPYDEKEQPEFLQKI--EDPDLRLWVEELNALW-PALVRKINKKPGLLPEASSLLPL  114

Query  179  ESTQKTECVGVPFVVPGGRFNELYGWDSYMESLGLLVSNRVDLAKAMVINFCFCIKHYGK  238
             +         PFVVPGGRF ELY WDSY   LGLL S   DLAK MV NF + I+ YG 
Sbjct  115  PN---------PFVVPGGRFRELYYWDSYFTILGLLESGMHDLAKGMVENFIYLIETYGH  165

Query  239  ILNANRSYYLTRSQPPFLTDMALRVYERIKNEPDAMDFLRNATLAAIKEYYSVWTAAPRY  298
            I N NRSYYL RSQPPFLTDM L VYE+        D L    LAA+K+ Y+ W A PR 
Sbjct  166  IPNGNRSYYLNRSQPPFLTDMVLLVYEKT-----EDDALLRRYLAALKKEYAFWMANPRL  220

Query  299  DELSGLS-RYRPEGRGVPPETEPTHFTHILTPYAEKHGMTFKEFVQAYNEGRVQEPELDE  357
            D ++GLS  Y     GVPPET           YAEK     KE  +AYN   ++      
Sbjct  221  DPVTGLSDGYLLNRYGVPPETPRPESYLEDVEYAEKLP---KERPKAYNYRDLKAGAESG  277

Query  358  YFLHDRAVRESGHDTSYRLERVCANLATVDLNSLLYKYEVDIARIIRTYFKDRLEIPPEF  417
            +    R VRE GHDT Y  E    +L  VDLN+LLYKYE DIA     +F D L      
Sbjct  278  WDFSSRWVRE-GHDTGYLAEIRTTSLVPVDLNALLYKYEKDIA-----FFCDVLG-----  326

Query  418  RTESTKDIESESSSVWDRRARRRKVRMDTYLWDEEKGMYFDYDTVLQKRTTYESATTFWA  477
                    +SE+S++W+ RA +R++ +D YLW+EE G++FDYD   +K+T Y SAT FW 
Sbjct  327  --------DSETSAIWEERAEQRRLAIDKYLWNEEAGVWFDYDLKKRKQTNYFSATNFWP  378

Query  478  MWAGLATPHQAAELVRKALPRFEVYGGLVSGTEESRGAVGLDRPNRQWDYPYGWAPQQML  537
            +WAGLA+P QA  +V K LP+ E  G LV      R    LD   +QWDYP GWAP Q L
Sbjct  379  LWAGLASPDQAK-MVAKVLPKLEESGLLVF--PGGRPTSLLD-SGQQWDYPNGWAPLQWL  434

Query  538  AWTGLLRYGYQEEAERLAYKWLFMITKAFVDFNGVVVEKYDVTRPIDPHRVDAEYGNQGV  597
            A  GL RYGY E AERLAY+WLF  TKAFVD  G +VEKYDVTR         EYG  G 
Sbjct  435  AVEGLQRYGYDELAERLAYRWLFTNTKAFVDE-GKMVEKYDVTR-------GGEYG--GG  484

Query  598  DFKGAPREG  606
              +  P+EG
Sbjct  485  GGEYVPQEG  493



Lambda      K        H        a         alpha
   0.320    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 768135992


Query= TCONS_00031483

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00031484

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425991 pfam01019, G_glu_transpept, Gamma-glutamyltranspeptidase   364     3e-123


>CDD:425991 pfam01019, G_glu_transpept, Gamma-glutamyltranspeptidase.  
Length=499

 Score = 364 bits (937),  Expect = 3e-123, Method: Composition-based stats.
 Identities = 137/414 (33%), Positives = 195/414 (47%), Gaps = 60/414 (14%)

Query  1    MLKLDPKARD----GVRSPRPGEIMKNPTLAKTFRRLAAEGKKGFYEGEVAQELVKVIQD  56
             L+ DP  R       R  + GE++K P LAKT   +A EG   FY GE+AQ+LV  +Q 
Sbjct  133  RLRADPGLRKIFLPTGRVLKAGELLKQPALAKTLELIAEEGPDAFYRGELAQQLVADLQA  192

Query  57   LGGYMTLDDLK-YHAETGTQNTEAISLKFTGQDIVKKQTAGTDGEENQGVEIWEHPPNGQ  115
             GG +T +DL  Y  +      E +S  + G                    ++  PP+  
Sbjct  193  NGGIITAEDLANYRVKI----REPLSADYGGYT------------------VYSPPPSSG  230

Query  116  GIVALMALGILEELERTGKIPVFTEDQHNSTEYLHAVIESLRIAFADASWWVTDPDVEKV  175
            GI  L  L ILE  + +           NS EYLH +IE++++A+AD + ++ DPD   V
Sbjct  231  GIALLQILNILEGFDLSSL--------LNSAEYLHLLIEAMKLAYADRTRYLGDPDFVPV  282

Query  176  PSKELISREYLAERAKLFNPEKAADIIDHGSPAHNHCDTVYFAVTDEEGNGISFINSNYA  235
            P + L+S EY  ERAKL NP  A       S A     T +F+V D +GN +SF ++   
Sbjct  283  PVENLLSPEYAKERAKLINPNAAFPS----SYAPEDGGTTHFSVVDRDGNAVSFTSTINL  338

Query  236  GFGSGIIPKGCGFTLQNRGANFS--------LDPGHPNALASRKRPYHTIIPALITNCSD  287
            GFGSG++  G G  L N   +FS        LDP   NA+A  KRP  ++ P ++ +  D
Sbjct  339  GFGSGVVVPGTGILLNNEMDDFSTPPGNAFGLDPSPANAIAPGKRPLSSMAPTIVLD--D  396

Query  288  GSLHSVYGVMGGFMQPQGHVQVLLNMLAFNYHPQAALDAPRICIAADSEPGNQTVYIEEG  347
            G    V G  GG       +QV++N+L      Q A+DAPRI       P    + +E G
Sbjct  397  GKPVLVVGAPGGSRIISAVLQVIVNVLDLGLDLQQAVDAPRIHHQL---PD--VLEVEPG  451

Query  348  ISDDVIEGLKRLGHQVKVLSGWQRGMFGRGQIIRCHYDDDQLVYSAGSDPRGDG  401
              ++V+  L+  GH+VKV+         +             V  A SDPR DG
Sbjct  452  FPEEVLAELEARGHKVKVVEDSSSVGAIQIVRRT---GG---VLYAASDPRRDG  499



Lambda      K        H        a         alpha
   0.317    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00031485

Length=321


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 372672612


Query= TCONS_00031486

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00031487

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00031488

Length=438


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 533728992


Query= TCONS_00035565

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00031489

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00035566

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00035567

Length=203


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00035568

Length=396


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.121    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00031492

Length=208


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00031493

Length=219


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222956820


Query= TCONS_00031494

Length=1012


***** No hits found *****



Lambda      K        H        a         alpha
   0.296    0.116    0.312    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1296942416


Query= TCONS_00035569

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            94.4    1e-23


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 94.4 bits (235),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 82/176 (47%), Gaps = 0/176 (0%)

Query  6    TVVNLNISLYMLSMSIFPLWWSSFSERLGRRTIYLVSFSLFVLFNVLSAVAHSISMLIVM  65
            T + L ++L+ L  ++        S+R GRR + L+   LF L  +L   A S+ +L+V+
Sbjct  32   TEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVL  91

Query  66   RMLSGGASASVQAVGAGTIADLWDPHERGRAMSIFYLGPLCGPLLAPIVGGALAERWRWR  125
            R+L G  + ++       IAD + P ERGRA+ +   G   G  L P++GG LA  + WR
Sbjct  92   RVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWR  151

Query  126  STMWFLAVYGGILVIFIFFALPETLANRKQPHGDEQAPVEQQLSRMSSRQVVHFTA  181
            +    LA+   +  + +    P   + R +P  + +  +      +    V+    
Sbjct  152  AAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLL  207



Lambda      K        H        a         alpha
   0.328    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00035570

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            106     7e-27


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 106 bits (267),  Expect = 7e-27, Method: Composition-based stats.
 Identities = 57/261 (22%), Positives = 101/261 (39%), Gaps = 32/261 (12%)

Query  6    TVVNLNISLYMLSMSIFPLWWSSFSERLGRRTIYLVSFSLFVLFNVLSAVAHSISMLIVM  65
            T + L ++L+ L  ++        S+R GRR + L+   LF L  +L   A S+ +L+V+
Sbjct  32   TEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVL  91

Query  66   RMLSGGASASVQAVGAGTIADLWDPHERGRAMSIFYLGPLCGPLLAPIVGGALAERWRWR  125
            R+L G  + ++       IAD + P ERGRA+ +   G   G  L P++GG LA  + WR
Sbjct  92   RVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWR  151

Query  126  STMWFLAVYGGILVIFIFFALPETLANRKQPHGDEQAPVEQQLSRMSSRQVVHFTAKWLK  185
            +    LA+   +  + +    P   + R +P  + +  +      +    V+      L 
Sbjct  152  AAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALL-  210

Query  186  ALKMVFLDPLKIVLYLRYPAVLLTVYYASITFGSLYVLNVSVEHTFSTNPYNFSTIIVGC  245
                                +    ++  +T+  LY                 S ++ G 
Sbjct  211  --------------------LFGFAFFGLLTYLPLYQEV-----------LGLSALLAGL  239

Query  246  LYIPNSLGYIAASVFGGRWMD  266
            L     L      +  GR  D
Sbjct  240  LLGLGGLLGAIGRLLLGRLSD  260



Lambda      K        H        a         alpha
   0.326    0.138    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00031496

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            106     1e-26


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 106 bits (266),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 57/261 (22%), Positives = 101/261 (39%), Gaps = 32/261 (12%)

Query  6    TVVNLNISLYMLSMSIFPLWWSSFSERLGRRTIYLVSFSLFVLFNVLSAVAHSISMLIVM  65
            T + L ++L+ L  ++        S+R GRR + L+   LF L  +L   A S+ +L+V+
Sbjct  32   TEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVL  91

Query  66   RMLSGGASASVQAVGAGTIADLWDPHERGRAMSIFYLGPLCGPLLAPIVGGALAERWRWR  125
            R+L G  + ++       IAD + P ERGRA+ +   G   G  L P++GG LA  + WR
Sbjct  92   RVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWR  151

Query  126  STMWFLAVYGGILVIFIFFALPETLANRKQPHGDEQAPVEQQLSRMSSRQVVHFTAKWLK  185
            +    LA+   +  + +    P   + R +P  + +  +      +    V+      L 
Sbjct  152  AAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALL-  210

Query  186  ALKMVFLDPLKIVLYLRYPAVLLTVYYASITFGSLYVLNVSVEHTFSTNPYNFSTIIVGC  245
                                +    ++  +T+  LY                 S ++ G 
Sbjct  211  --------------------LFGFAFFGLLTYLPLYQEV-----------LGLSALLAGL  239

Query  246  LYIPNSLGYIAASVFGGRWMD  266
            L     L      +  GR  D
Sbjct  240  LLGLGGLLGAIGRLLLGRLSD  260



Lambda      K        H        a         alpha
   0.327    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00031495

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            106     1e-26


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 106 bits (266),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 57/261 (22%), Positives = 101/261 (39%), Gaps = 32/261 (12%)

Query  6    TVVNLNISLYMLSMSIFPLWWSSFSERLGRRTIYLVSFSLFVLFNVLSAVAHSISMLIVM  65
            T + L ++L+ L  ++        S+R GRR + L+   LF L  +L   A S+ +L+V+
Sbjct  32   TEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVL  91

Query  66   RMLSGGASASVQAVGAGTIADLWDPHERGRAMSIFYLGPLCGPLLAPIVGGALAERWRWR  125
            R+L G  + ++       IAD + P ERGRA+ +   G   G  L P++GG LA  + WR
Sbjct  92   RVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWR  151

Query  126  STMWFLAVYGGILVIFIFFALPETLANRKQPHGDEQAPVEQQLSRMSSRQVVHFTAKWLK  185
            +    LA+   +  + +    P   + R +P  + +  +      +    V+      L 
Sbjct  152  AAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALL-  210

Query  186  ALKMVFLDPLKIVLYLRYPAVLLTVYYASITFGSLYVLNVSVEHTFSTNPYNFSTIIVGC  245
                                +    ++  +T+  LY                 S ++ G 
Sbjct  211  --------------------LFGFAFFGLLTYLPLYQEV-----------LGLSALLAGL  239

Query  246  LYIPNSLGYIAASVFGGRWMD  266
            L     L      +  GR  D
Sbjct  240  LLGLGGLLGAIGRLLLGRLSD  260



Lambda      K        H        a         alpha
   0.327    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00035571

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            101     3e-24


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 101 bits (253),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 72/388 (19%), Positives = 129/388 (33%), Gaps = 76/388 (20%)

Query  6    TVVNLNISLYMLSMSIFPLWWSSFSERLGRRTIYLVSFSLFVLFNVLSAVAHSISMLIVM  65
            T + L ++L+ L  ++        S+R GRR + L+   LF L  +L   A S+ +L+V+
Sbjct  32   TEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVL  91

Query  66   RMLSGGASASVQAVGAGTIADLWDPHERGRAMSIFYLGPLCGPLLAPIVGGALAERWRWR  125
            R+L G  + ++       IAD + P ERGRA+ +   G   G  L P++GG LA  + WR
Sbjct  92   RVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLASLFGWR  151

Query  126  STMWFLAVYGGILVIFIFFALPETLANRKQPHGDEQAPVEQQLSRMSSRQVVHFTAKWLK  185
            +    LA+   +  + +    P   + R +P  + +  +      +    V+      L 
Sbjct  152  AAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKALLRDPVLWLLLALL-  210

Query  186  ALKMVFLDPLKIVLYLRYPAVLLTVYYASITFGSLYVLNVSVEHTFSTNPYNFSTIIVGC  245
                                +    ++  +T+  LY                 S ++ G 
Sbjct  211  --------------------LFGFAFFGLLTYLPLYQEV-----------LGLSALLAGL  239

Query  246  LYIPNSLGYIAASVFGGRWMDQIMQREARKAGRYDEHGELIYRPEDRMRENAWLGAFLYP  305
            L     L      +  GR  D++ +R                           L   L  
Sbjct  240  LLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLA--------------------LLLLILAA  279

Query  306  AALIWYGWTADKGVFWFAPVSGLGFCSTGWGKTNLVFQMAANFFFGIGSMLIFSMSTTML  365
              L+    T        A                           G G  L+F     ++
Sbjct  280  LGLLLLSLTLSSLWLLLAL-----------------------LLLGFGFGLVFPALNALV  316

Query  366  TEFMP-NKSSTGVALNNFMRNIFSCIGS  392
            ++  P  +  T   L N   ++   +G 
Sbjct  317  SDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 538330104


Query= TCONS_00031497

Length=121
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460348 pfam01822, WSC, WSC domain. This domain may be involve...  62.9    8e-15


>CDD:460348 pfam01822, WSC, WSC domain.  This domain may be involved in carbohydrate 
binding.
Length=82

 Score = 62.9 bits (153),  Expect = 8e-15, Method: Composition-based stats.
 Identities = 26/80 (33%), Positives = 30/80 (38%), Gaps = 6/80 (8%)

Query  32   QGCFSDSTPLVD-----QGPYTYQSNGYCQQLCMKTSNNLVFALTKGSNCLCGNQLPAKS  86
             GC+SD T          G Y   +   C   C   +      L  G  C CGN LP+ S
Sbjct  2    LGCYSDGTGGRRLLLGSSGDYDDMTPEKCIAFC-SAAGYTYAGLEYGGECYCGNSLPSGS  60

Query  87   AKTADSDCNVKCAGWPDVMC  106
            A    SDCN  C G     C
Sbjct  61   ALADSSDCNTPCPGDSSQTC  80



Lambda      K        H        a         alpha
   0.322    0.130    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00031498

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00031501

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00031500

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.503    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00031502

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00031504

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.503    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00031503

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00035572

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00031505

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.503    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00031499

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00031507

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00035573

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core...  123     8e-34
CDD:460819 pfam03129, HGTP_anticodon, Anticodon binding domain. T...  75.7    2e-17


>CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain 
(G, H, P, S and T).  tRNA-synt_2b is a family of largely threonyl-tRNA 
members.
Length=181

 Score = 123 bits (310),  Expect = 8e-34, Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 95/233 (41%), Gaps = 59/233 (25%)

Query  93   DVEKREWALKPMNCPGHFVLFG-HRERSYRELPLRIADFGVLHRNEASGALSGLTRVRKF  151
            D    E ALKP N PGH +LF     RS   LPL++A FG   R+EASG   GL RVR+F
Sbjct  5    DENGDELALKPTNEPGHTLLFREEGLRSKD-LPLKLAQFGTCFRHEASGDTRGLIRVRQF  63

Query  152  QQDDTHIFCTQDQIASEIEGLFDFLQSIYGLFGFTF-KLKLSTRPEKYLGDLETWNYAEE  210
             QDD HIF    Q   E+E     +  +Y   G     ++LS                  
Sbjct  64   HQDDAHIFHAPGQSPDELEDYIKLIDRVYSRLGLEVRVVRLSNSDG--------------  109

Query  211  QLKSAMTKFKGKDWTIDEGDGAFYGPKIDITIAD-ALKREFQCATIQLDYQAPINFKLEY  269
                                 AFYGPK+D  +   +L ++ Q  TIQ D           
Sbjct  110  --------------------SAFYGPKLDFEVVFPSLGKQRQTGTIQNDGF-------RL  142

Query  270  MTNEKGQAVMEDSKNEGETKSNEPGPGRARPVVIHRAIIGSFERFLGILIEHF  322
                  +   ED++++              P +IHRA +G  ERFL  ++E+ 
Sbjct  143  PRRLGIRYKDEDNESK-------------FPYMIHRAGLG-VERFLAAILENN  181


>CDD:460819 pfam03129, HGTP_anticodon, Anticodon binding domain.  This domain 
is found in histidyl, glycyl, threonyl and prolyl tRNA 
synthetases it is probably the anticodon binding domain.
Length=94

 Score = 75.7 bits (187),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 28/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query  334  QILIVPV---MPAVNDYVEELQQILRGDKLNVDIDISGNTMQKKIRTGQLAQYNFIFVVG  390
            Q++++P+      + +Y ++L + LR   + V++D    ++ KK R   L    F  VVG
Sbjct  1    QVVVIPLGEKAEELEEYAQKLAEELRAAGIRVELDDRNESIGKKFRRADLIGIPFALVVG  60

Query  391  AQEKESRSVNIRNRDDPATQHKGVMVPLEEARQKLRAL  428
             +E E  +V +R RD          V L+E  +KL+ L
Sbjct  61   EKELEEGTVTVRRRDTGEQ----ETVSLDELVEKLKEL  94



Lambda      K        H        a         alpha
   0.321    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 533728992


Query= TCONS_00031508

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core...  123     8e-34
CDD:460819 pfam03129, HGTP_anticodon, Anticodon binding domain. T...  75.7    2e-17


>CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain 
(G, H, P, S and T).  tRNA-synt_2b is a family of largely threonyl-tRNA 
members.
Length=181

 Score = 123 bits (310),  Expect = 8e-34, Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 95/233 (41%), Gaps = 59/233 (25%)

Query  93   DVEKREWALKPMNCPGHFVLFG-HRERSYRELPLRIADFGVLHRNEASGALSGLTRVRKF  151
            D    E ALKP N PGH +LF     RS   LPL++A FG   R+EASG   GL RVR+F
Sbjct  5    DENGDELALKPTNEPGHTLLFREEGLRSKD-LPLKLAQFGTCFRHEASGDTRGLIRVRQF  63

Query  152  QQDDTHIFCTQDQIASEIEGLFDFLQSIYGLFGFTF-KLKLSTRPEKYLGDLETWNYAEE  210
             QDD HIF    Q   E+E     +  +Y   G     ++LS                  
Sbjct  64   HQDDAHIFHAPGQSPDELEDYIKLIDRVYSRLGLEVRVVRLSNSDG--------------  109

Query  211  QLKSAMTKFKGKDWTIDEGDGAFYGPKIDITIAD-ALKREFQCATIQLDYQAPINFKLEY  269
                                 AFYGPK+D  +   +L ++ Q  TIQ D           
Sbjct  110  --------------------SAFYGPKLDFEVVFPSLGKQRQTGTIQNDGF-------RL  142

Query  270  MTNEKGQAVMEDSKNEGETKSNEPGPGRARPVVIHRAIIGSFERFLGILIEHF  322
                  +   ED++++              P +IHRA +G  ERFL  ++E+ 
Sbjct  143  PRRLGIRYKDEDNESK-------------FPYMIHRAGLG-VERFLAAILENN  181


>CDD:460819 pfam03129, HGTP_anticodon, Anticodon binding domain.  This domain 
is found in histidyl, glycyl, threonyl and prolyl tRNA 
synthetases it is probably the anticodon binding domain.
Length=94

 Score = 75.7 bits (187),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 28/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query  334  QILIVPV---MPAVNDYVEELQQILRGDKLNVDIDISGNTMQKKIRTGQLAQYNFIFVVG  390
            Q++++P+      + +Y ++L + LR   + V++D    ++ KK R   L    F  VVG
Sbjct  1    QVVVIPLGEKAEELEEYAQKLAEELRAAGIRVELDDRNESIGKKFRRADLIGIPFALVVG  60

Query  391  AQEKESRSVNIRNRDDPATQHKGVMVPLEEARQKLRAL  428
             +E E  +V +R RD          V L+E  +KL+ L
Sbjct  61   EKELEEGTVTVRRRDTGEQ----ETVSLDELVEKLKEL  94



Lambda      K        H        a         alpha
   0.321    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 533728992


Query= TCONS_00035574

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core...  90.5    1e-22
CDD:429764 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA syntheta...  60.2    7e-13


>CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain 
(G, H, P, S and T).  tRNA-synt_2b is a family of largely threonyl-tRNA 
members.
Length=181

 Score = 90.5 bits (225),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 38/75 (51%), Positives = 43/75 (57%), Gaps = 2/75 (3%)

Query  172  DVEKREWALKPMNCPGHFVLFG-HRERSYRELPLRIADFGVLHRNEASGALSGLTRVRKF  230
            D    E ALKP N PGH +LF     RS   LPL++A FG   R+EASG   GL RVR+F
Sbjct  5    DENGDELALKPTNEPGHTLLFREEGLRSKD-LPLKLAQFGTCFRHEASGDTRGLIRVRQF  63

Query  231  QQDDTHIFCTQDQVR  245
             QDD HIF    Q  
Sbjct  64   HQDDAHIFHAPGQSP  78


>CDD:429764 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second 
additional domain.  The catalytically active from of threonyl/alanyl 
tRNA synthetase is a dimer. Within the tRNA synthetase 
class II dimer, the bound tRNA interacts with both monomers 
making specific interactions with the catalytic domain, 
the C-terminal domain, and this domain (the second additional 
domain). The second additional domain is comprised of a 
pair of perpendicularly orientated antiparallel beta sheets, 
of four and three strands, respectively, that surround a central 
alpha helix that forms the core of the domain.
Length=43

 Score = 60.2 bits (147),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 20/49 (41%), Positives = 26/49 (53%), Gaps = 8/49 (16%)

Query  22  TVYRCGTL-VDLCRGPHIQNTGKIKTFKIMQNSSAYFLGDQNNDSLQRI  69
            V   G   VDLC G H+ NTG+I  FKI++       G+  N  L+RI
Sbjct  2   RVVSIGDFDVDLCGGTHVPNTGEIGAFKILK-------GESKNKGLRRI  43



Lambda      K        H        a         alpha
   0.322    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00031509

Length=272


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00031510

Length=737
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core...  125     2e-33
CDD:460819 pfam03129, HGTP_anticodon, Anticodon binding domain. T...  77.2    8e-18
CDD:429764 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA syntheta...  60.5    1e-12


>CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain 
(G, H, P, S and T).  tRNA-synt_2b is a family of largely threonyl-tRNA 
members.
Length=181

 Score = 125 bits (315),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 95/233 (41%), Gaps = 59/233 (25%)

Query  392  DVEKREWALKPMNCPGHFVLFG-HRERSYRELPLRIADFGVLHRNEASGALSGLTRVRKF  450
            D    E ALKP N PGH +LF     RS   LPL++A FG   R+EASG   GL RVR+F
Sbjct  5    DENGDELALKPTNEPGHTLLFREEGLRSKD-LPLKLAQFGTCFRHEASGDTRGLIRVRQF  63

Query  451  QQDDTHIFCTQDQIASEIEGLFDFLQSIYGLFGFTF-KLKLSTRPEKYLGDLETWNYAEE  509
             QDD HIF    Q   E+E     +  +Y   G     ++LS                  
Sbjct  64   HQDDAHIFHAPGQSPDELEDYIKLIDRVYSRLGLEVRVVRLSNSDG--------------  109

Query  510  QLKSAMTKFKGKDWTIDEGDGAFYGPKIDITIAD-ALKREFQCATIQLDYQAPINFKLEY  568
                                 AFYGPK+D  +   +L ++ Q  TIQ D           
Sbjct  110  --------------------SAFYGPKLDFEVVFPSLGKQRQTGTIQNDGF-------RL  142

Query  569  MTNEKGQAVMEDSKNEGETKSNEPGPGRARPVVIHRAIIGSFERFLGILIEHF  621
                  +   ED++++              P +IHRA +G  ERFL  ++E+ 
Sbjct  143  PRRLGIRYKDEDNESK-------------FPYMIHRAGLG-VERFLAAILENN  181


>CDD:460819 pfam03129, HGTP_anticodon, Anticodon binding domain.  This domain 
is found in histidyl, glycyl, threonyl and prolyl tRNA 
synthetases it is probably the anticodon binding domain.
Length=94

 Score = 77.2 bits (191),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 28/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query  633  QILIVPV---MPAVNDYVEELQQILRGDKLNVDIDISGNTMQKKIRTGQLAQYNFIFVVG  689
            Q++++P+      + +Y ++L + LR   + V++D    ++ KK R   L    F  VVG
Sbjct  1    QVVVIPLGEKAEELEEYAQKLAEELRAAGIRVELDDRNESIGKKFRRADLIGIPFALVVG  60

Query  690  AQEKESRSVNIRNRDDPATQHKGVMVPLEEARQKLRAL  727
             +E E  +V +R RD          V L+E  +KL+ L
Sbjct  61   EKELEEGTVTVRRRDTGEQ----ETVSLDELVEKLKEL  94


>CDD:429764 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second 
additional domain.  The catalytically active from of threonyl/alanyl 
tRNA synthetase is a dimer. Within the tRNA synthetase 
class II dimer, the bound tRNA interacts with both monomers 
making specific interactions with the catalytic domain, 
the C-terminal domain, and this domain (the second additional 
domain). The second additional domain is comprised of a 
pair of perpendicularly orientated antiparallel beta sheets, 
of four and three strands, respectively, that surround a central 
alpha helix that forms the core of the domain.
Length=43

 Score = 60.5 bits (148),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 20/49 (41%), Positives = 26/49 (53%), Gaps = 8/49 (16%)

Query  242  TVYRCGTL-VDLCRGPHIQNTGKIKTFKIMQNSSAYFLGDQNNDSLQRI  289
             V   G   VDLC G H+ NTG+I  FKI++       G+  N  L+RI
Sbjct  2    RVVSIGDFDVDLCGGTHVPNTGEIGAFKILK-------GESKNKGLRRI  43



Lambda      K        H        a         alpha
   0.319    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 935662736


Query= TCONS_00035575

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core...  123     6e-34


>CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain 
(G, H, P, S and T).  tRNA-synt_2b is a family of largely threonyl-tRNA 
members.
Length=181

 Score = 123 bits (310),  Expect = 6e-34, Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 95/233 (41%), Gaps = 59/233 (25%)

Query  93   DVEKREWALKPMNCPGHFVLFG-HRERSYRELPLRIADFGVLHRNEASGALSGLTRVRKF  151
            D    E ALKP N PGH +LF     RS   LPL++A FG   R+EASG   GL RVR+F
Sbjct  5    DENGDELALKPTNEPGHTLLFREEGLRSKD-LPLKLAQFGTCFRHEASGDTRGLIRVRQF  63

Query  152  QQDDTHIFCTQDQIASEIEGLFDFLQSIYGLFGFTF-KLKLSTRPEKYLGDLETWNYAEE  210
             QDD HIF    Q   E+E     +  +Y   G     ++LS                  
Sbjct  64   HQDDAHIFHAPGQSPDELEDYIKLIDRVYSRLGLEVRVVRLSNSDG--------------  109

Query  211  QLKSAMTKFKGKDWTIDEGDGAFYGPKIDITIAD-ALKREFQCATIQLDYQAPINFKLEY  269
                                 AFYGPK+D  +   +L ++ Q  TIQ D           
Sbjct  110  --------------------SAFYGPKLDFEVVFPSLGKQRQTGTIQNDGF-------RL  142

Query  270  MTNEKGQAVMEDSKNEGETKSNEPGPGRARPVVIHRAIIGSFERFLGILIEHF  322
                  +   ED++++              P +IHRA +G  ERFL  ++E+ 
Sbjct  143  PRRLGIRYKDEDNESK-------------FPYMIHRAGLG-VERFLAAILENN  181



Lambda      K        H        a         alpha
   0.322    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 514156202


Query= TCONS_00035576

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core...  123     1e-33
CDD:460819 pfam03129, HGTP_anticodon, Anticodon binding domain. T...  76.1    1e-17
CDD:429764 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA syntheta...  59.4    2e-12


>CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain 
(G, H, P, S and T).  tRNA-synt_2b is a family of largely threonyl-tRNA 
members.
Length=181

 Score = 123 bits (311),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 95/233 (41%), Gaps = 59/233 (25%)

Query  172  DVEKREWALKPMNCPGHFVLFG-HRERSYRELPLRIADFGVLHRNEASGALSGLTRVRKF  230
            D    E ALKP N PGH +LF     RS   LPL++A FG   R+EASG   GL RVR+F
Sbjct  5    DENGDELALKPTNEPGHTLLFREEGLRSKD-LPLKLAQFGTCFRHEASGDTRGLIRVRQF  63

Query  231  QQDDTHIFCTQDQIASEIEGLFDFLQSIYGLFGFTF-KLKLSTRPEKYLGDLETWNYAEE  289
             QDD HIF    Q   E+E     +  +Y   G     ++LS                  
Sbjct  64   HQDDAHIFHAPGQSPDELEDYIKLIDRVYSRLGLEVRVVRLSNSDG--------------  109

Query  290  QLKSAMTKFKGKDWTIDEGDGAFYGPKIDITIAD-ALKREFQCATIQLDYQAPINFKLEY  348
                                 AFYGPK+D  +   +L ++ Q  TIQ D           
Sbjct  110  --------------------SAFYGPKLDFEVVFPSLGKQRQTGTIQNDGF-------RL  142

Query  349  MTNEKGQAVMEDSKNEGETKSNEPGPGRARPVVIHRAIIGSFERFLGILIEHF  401
                  +   ED++++              P +IHRA +G  ERFL  ++E+ 
Sbjct  143  PRRLGIRYKDEDNESK-------------FPYMIHRAGLG-VERFLAAILENN  181


>CDD:460819 pfam03129, HGTP_anticodon, Anticodon binding domain.  This domain 
is found in histidyl, glycyl, threonyl and prolyl tRNA 
synthetases it is probably the anticodon binding domain.
Length=94

 Score = 76.1 bits (188),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 28/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query  413  QILIVPV---MPAVNDYVEELQQILRGDKLNVDIDISGNTMQKKIRTGQLAQYNFIFVVG  469
            Q++++P+      + +Y ++L + LR   + V++D    ++ KK R   L    F  VVG
Sbjct  1    QVVVIPLGEKAEELEEYAQKLAEELRAAGIRVELDDRNESIGKKFRRADLIGIPFALVVG  60

Query  470  AQEKESRSVNIRNRDDPATQHKGVMVPLEEARQKLRAL  507
             +E E  +V +R RD          V L+E  +KL+ L
Sbjct  61   EKELEEGTVTVRRRDTGEQ----ETVSLDELVEKLKEL  94


>CDD:429764 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second 
additional domain.  The catalytically active from of threonyl/alanyl 
tRNA synthetase is a dimer. Within the tRNA synthetase 
class II dimer, the bound tRNA interacts with both monomers 
making specific interactions with the catalytic domain, 
the C-terminal domain, and this domain (the second additional 
domain). The second additional domain is comprised of a 
pair of perpendicularly orientated antiparallel beta sheets, 
of four and three strands, respectively, that surround a central 
alpha helix that forms the core of the domain.
Length=43

 Score = 59.4 bits (145),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 20/49 (41%), Positives = 26/49 (53%), Gaps = 8/49 (16%)

Query  22  TVYRCGTL-VDLCRGPHIQNTGKIKTFKIMQNSSAYFLGDQNNDSLQRI  69
            V   G   VDLC G H+ NTG+I  FKI++       G+  N  L+RI
Sbjct  2   RVVSIGDFDVDLCGGTHVPNTGEIGAFKILK-------GESKNKGLRRI  43



Lambda      K        H        a         alpha
   0.321    0.139    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 644992116


Query= TCONS_00031511

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core...  123     8e-34
CDD:460819 pfam03129, HGTP_anticodon, Anticodon binding domain. T...  75.7    2e-17


>CDD:395469 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain 
(G, H, P, S and T).  tRNA-synt_2b is a family of largely threonyl-tRNA 
members.
Length=181

 Score = 123 bits (310),  Expect = 8e-34, Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 95/233 (41%), Gaps = 59/233 (25%)

Query  93   DVEKREWALKPMNCPGHFVLFG-HRERSYRELPLRIADFGVLHRNEASGALSGLTRVRKF  151
            D    E ALKP N PGH +LF     RS   LPL++A FG   R+EASG   GL RVR+F
Sbjct  5    DENGDELALKPTNEPGHTLLFREEGLRSKD-LPLKLAQFGTCFRHEASGDTRGLIRVRQF  63

Query  152  QQDDTHIFCTQDQIASEIEGLFDFLQSIYGLFGFTF-KLKLSTRPEKYLGDLETWNYAEE  210
             QDD HIF    Q   E+E     +  +Y   G     ++LS                  
Sbjct  64   HQDDAHIFHAPGQSPDELEDYIKLIDRVYSRLGLEVRVVRLSNSDG--------------  109

Query  211  QLKSAMTKFKGKDWTIDEGDGAFYGPKIDITIAD-ALKREFQCATIQLDYQAPINFKLEY  269
                                 AFYGPK+D  +   +L ++ Q  TIQ D           
Sbjct  110  --------------------SAFYGPKLDFEVVFPSLGKQRQTGTIQNDGF-------RL  142

Query  270  MTNEKGQAVMEDSKNEGETKSNEPGPGRARPVVIHRAIIGSFERFLGILIEHF  322
                  +   ED++++              P +IHRA +G  ERFL  ++E+ 
Sbjct  143  PRRLGIRYKDEDNESK-------------FPYMIHRAGLG-VERFLAAILENN  181


>CDD:460819 pfam03129, HGTP_anticodon, Anticodon binding domain.  This domain 
is found in histidyl, glycyl, threonyl and prolyl tRNA 
synthetases it is probably the anticodon binding domain.
Length=94

 Score = 75.7 bits (187),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 28/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query  334  QILIVPV---MPAVNDYVEELQQILRGDKLNVDIDISGNTMQKKIRTGQLAQYNFIFVVG  390
            Q++++P+      + +Y ++L + LR   + V++D    ++ KK R   L    F  VVG
Sbjct  1    QVVVIPLGEKAEELEEYAQKLAEELRAAGIRVELDDRNESIGKKFRRADLIGIPFALVVG  60

Query  391  AQEKESRSVNIRNRDDPATQHKGVMVPLEEARQKLRAL  428
             +E E  +V +R RD          V L+E  +KL+ L
Sbjct  61   EKELEEGTVTVRRRDTGEQ----ETVSLDELVEKLKEL  94



Lambda      K        H        a         alpha
   0.321    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 533728992


Query= TCONS_00031512

Length=169
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460819 pfam03129, HGTP_anticodon, Anticodon binding domain. T...  71.5    1e-17


>CDD:460819 pfam03129, HGTP_anticodon, Anticodon binding domain.  This domain 
is found in histidyl, glycyl, threonyl and prolyl tRNA 
synthetases it is probably the anticodon binding domain.
Length=94

 Score = 71.5 bits (176),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 28/98 (29%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query  65   QILIVPV---MPAVNDYVEELQQILRGDKLNVDIDISGNTMQKKIRTGQLAQYNFIFVVG  121
            Q++++P+      + +Y ++L + LR   + V++D    ++ KK R   L    F  VVG
Sbjct  1    QVVVIPLGEKAEELEEYAQKLAEELRAAGIRVELDDRNESIGKKFRRADLIGIPFALVVG  60

Query  122  AQEKESRSVNIRNRDDPATQHKGVMVPLEEARQKLRAL  159
             +E E  +V +R RD          V L+E  +KL+ L
Sbjct  61   EKELEEGTVTVRRRDTGEQ----ETVSLDELVEKLKEL  94



Lambda      K        H        a         alpha
   0.318    0.137    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00031515

Length=481


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599678264


Query= TCONS_00031513

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00031514

Length=118
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            67.5    2e-15


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 67.5 bits (166),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 31/95 (33%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query  10   RSGQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFS  69
            +  + LT     S   QI  G++Y+ S N +HRDL   N LV+ +  +KI DFGL+R   
Sbjct  94   KHKRKLTLKDLLSMALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIY  153

Query  70   IDPEENAGYMTEYVATRWYRAPEIMLSFQSYTKAS  104
             D           +  +W  APE  L    +T  S
Sbjct  154  DDDYYRKR-GGGKLPIKWM-APES-LKDGKFTSKS  185



Lambda      K        H        a         alpha
   0.326    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00031517

Length=117
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            77.5    4e-19
CDD:459660 pfam00069, Pkinase, Protein kinase domain                  69.2    3e-16


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 77.5 bits (192),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 3/108 (3%)

Query  10   RSGQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFS  69
            +  + LT     S   QI  G++Y+ S N +HRDL   N LV+ +  +KI DFGL+R   
Sbjct  94   KHKRKLTLKDLLSMALQIAKGMEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIY  153

Query  70   IDPEENAGYMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELL  117
             D           +  +W  APE  L    +T   DVWS G +L E+ 
Sbjct  154  DDDYYRKR-GGGKLPIKWM-APES-LKDGKFTSKSDVWSFGVLLWEIF  198


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 69.2 bits (170),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 29/118 (25%), Positives = 42/118 (36%), Gaps = 44/118 (37%)

Query  1    MEC-DLAAIIRSGQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKI  59
            +E   L  ++      ++   +  + QIL GL                            
Sbjct  80   VEGGSLFDLLSEKGAFSEREAKFIMKQILEGL----------------------------  111

Query  60   CDFGLARGFSIDPEENAGYMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELL  117
                          E+   +T +V T WY APE+ L    Y   +DVWS+GCIL ELL
Sbjct  112  --------------ESGSSLTTFVGTPWYMAPEV-LGGNPYGPKVDVWSLGCILYELL  154



Lambda      K        H        a         alpha
   0.326    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00035577

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  166     5e-50
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            106     6e-27


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 166 bits (423),  Expect = 5e-50, Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 118/293 (40%), Gaps = 77/293 (26%)

Query  23   YNVTKELGQGAYGIVCAATNVHTGEGVAIKKVTNVFSKKILAKRALREIKLLQHFRGHRN  82
            Y V ++LG G++G V  A +  TG+ VAIKK+     KK   K  LREIK+L+    H N
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLN-HPN  59

Query  83   ITCLYDMDIPRPDNFNETYLYEELMEC-DLAAIIRSGQPLTDAHFQSFIYQILCGLKYIH  141
            I  LYD      DN    YL  E +E   L  ++      ++   +  + QIL GL    
Sbjct  60   IVRLYDA-FEDKDNL---YLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL----  111

Query  142  SANVLHRDLKPGNLLVNADCELKICDFGLARGFSIDPEENAGYMTEYVATRWYRAPEIML  201
                                                  E+   +T +V T WY APE+ L
Sbjct  112  --------------------------------------ESGSSLTTFVGTPWYMAPEV-L  132

Query  202  SFQSYTKASIVWSVGCILAELLGGRPFFKGRDYVDQLNQILHYLGTPNEETLSRIGSPRA  261
                Y     VWS+GCIL ELL G+P F G +  +    I+                   
Sbjct  133  GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIID------------------  174

Query  262  QEYVRNLPFMPKIPFQRLFPNANPDALDLLDRMLAFDPASRISVEEALEHPYL  314
                          F  L  N + +A DLL ++L  DP+ R++  +AL+HP+ 
Sbjct  175  ----------QPYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 106 bits (267),  Expect = 6e-27, Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 94/210 (45%), Gaps = 17/210 (8%)

Query  27   KELGQGAYGIVCAATNVHTGEG----VAIKKVTNVFSKKILAKRALREIKLLQHFRGHRN  82
            ++LG+GA+G V   T    GE     VA+K +     ++      L E  +++    H N
Sbjct  5    EKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERED-FLEEASIMKKLD-HPN  62

Query  83   ITCLYDMDIPRPDNFNETYLYEELMEC-DLAAIIRS-GQPLTDAHFQSFIYQILCGLKYI  140
            I  L  +           Y+  E M   DL   +R   + LT     S   QI  G++Y+
Sbjct  63   IVKLLGVCTQGE----PLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYL  118

Query  141  HSANVLHRDLKPGNLLVNADCELKICDFGLARGFSIDPEENAGYMTEYVATRWYRAPEIM  200
             S N +HRDL   N LV+ +  +KI DFGL+R    D           +  +W  APE  
Sbjct  119  ESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKR-GGGKLPIKWM-APES-  175

Query  201  LSFQSYTKASIVWSVGCILAEL--LGGRPF  228
            L    +T  S VWS G +L E+  LG +P+
Sbjct  176  LKDGKFTSKSDVWSFGVLLWEIFTLGEQPY  205



Lambda      K        H        a         alpha
   0.322    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00035579

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  172     3e-52
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            107     2e-27


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 172 bits (439),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 84/293 (29%), Positives = 120/293 (41%), Gaps = 77/293 (26%)

Query  23   YNVTKELGQGAYGIVCAATNVHTGEGVAIKKVTNVFSKKILAKRALREIKLLQHFRGHRN  82
            Y V ++LG G++G V  A +  TG+ VAIKK+     KK   K  LREIK+L+    H N
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLN-HPN  59

Query  83   ITCLYDMDIPRPDNFNETYLYEELMEC-DLAAIIRSGQPLTDAHFQSFIYQILCGLKYIH  141
            I  LYD      DN    YL  E +E   L  ++      ++   +  + QIL GL    
Sbjct  60   IVRLYDA-FEDKDNL---YLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL----  111

Query  142  SANVLHRDLKPGNLLVNADCELKICDFGLARGFSIDPEENAGYMTEYVATRWYRAPEIML  201
                                                  E+   +T +V T WY APE+ L
Sbjct  112  --------------------------------------ESGSSLTTFVGTPWYMAPEV-L  132

Query  202  SFQSYTKAIDVWSVGCILAELLGGRPFFKGRDYVDQLNQILHYLGTPNEETLSRIGSPRA  261
                Y   +DVWS+GCIL ELL G+P F G +  +    I+                   
Sbjct  133  GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIID------------------  174

Query  262  QEYVRNLPFMPKIPFQRLFPNANPDALDLLDRMLAFDPASRISVEEALEHPYL  314
                          F  L  N + +A DLL ++L  DP+ R++  +AL+HP+ 
Sbjct  175  ----------QPYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 107 bits (271),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 94/210 (45%), Gaps = 17/210 (8%)

Query  27   KELGQGAYGIVCAATNVHTGEG----VAIKKVTNVFSKKILAKRALREIKLLQHFRGHRN  82
            ++LG+GA+G V   T    GE     VA+K +     ++      L E  +++    H N
Sbjct  5    EKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERED-FLEEASIMKKLD-HPN  62

Query  83   ITCLYDMDIPRPDNFNETYLYEELMEC-DLAAIIRS-GQPLTDAHFQSFIYQILCGLKYI  140
            I  L  +           Y+  E M   DL   +R   + LT     S   QI  G++Y+
Sbjct  63   IVKLLGVCTQGE----PLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYL  118

Query  141  HSANVLHRDLKPGNLLVNADCELKICDFGLARGFSIDPEENAGYMTEYVATRWYRAPEIM  200
             S N +HRDL   N LV+ +  +KI DFGL+R    D           +  +W  APE  
Sbjct  119  ESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKR-GGGKLPIKWM-APES-  175

Query  201  LSFQSYTKAIDVWSVGCILAEL--LGGRPF  228
            L    +T   DVWS G +L E+  LG +P+
Sbjct  176  LKDGKFTSKSDVWSFGVLLWEIFTLGEQPY  205



Lambda      K        H        a         alpha
   0.322    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00035578

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  172     3e-52
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            107     2e-27


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 172 bits (439),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 84/293 (29%), Positives = 120/293 (41%), Gaps = 77/293 (26%)

Query  23   YNVTKELGQGAYGIVCAATNVHTGEGVAIKKVTNVFSKKILAKRALREIKLLQHFRGHRN  82
            Y V ++LG G++G V  A +  TG+ VAIKK+     KK   K  LREIK+L+    H N
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLN-HPN  59

Query  83   ITCLYDMDIPRPDNFNETYLYEELMEC-DLAAIIRSGQPLTDAHFQSFIYQILCGLKYIH  141
            I  LYD      DN    YL  E +E   L  ++      ++   +  + QIL GL    
Sbjct  60   IVRLYDA-FEDKDNL---YLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL----  111

Query  142  SANVLHRDLKPGNLLVNADCELKICDFGLARGFSIDPEENAGYMTEYVATRWYRAPEIML  201
                                                  E+   +T +V T WY APE+ L
Sbjct  112  --------------------------------------ESGSSLTTFVGTPWYMAPEV-L  132

Query  202  SFQSYTKAIDVWSVGCILAELLGGRPFFKGRDYVDQLNQILHYLGTPNEETLSRIGSPRA  261
                Y   +DVWS+GCIL ELL G+P F G +  +    I+                   
Sbjct  133  GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIID------------------  174

Query  262  QEYVRNLPFMPKIPFQRLFPNANPDALDLLDRMLAFDPASRISVEEALEHPYL  314
                          F  L  N + +A DLL ++L  DP+ R++  +AL+HP+ 
Sbjct  175  ----------QPYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 107 bits (271),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 94/210 (45%), Gaps = 17/210 (8%)

Query  27   KELGQGAYGIVCAATNVHTGEG----VAIKKVTNVFSKKILAKRALREIKLLQHFRGHRN  82
            ++LG+GA+G V   T    GE     VA+K +     ++      L E  +++    H N
Sbjct  5    EKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERED-FLEEASIMKKLD-HPN  62

Query  83   ITCLYDMDIPRPDNFNETYLYEELMEC-DLAAIIRS-GQPLTDAHFQSFIYQILCGLKYI  140
            I  L  +           Y+  E M   DL   +R   + LT     S   QI  G++Y+
Sbjct  63   IVKLLGVCTQGE----PLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYL  118

Query  141  HSANVLHRDLKPGNLLVNADCELKICDFGLARGFSIDPEENAGYMTEYVATRWYRAPEIM  200
             S N +HRDL   N LV+ +  +KI DFGL+R    D           +  +W  APE  
Sbjct  119  ESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKR-GGGKLPIKWM-APES-  175

Query  201  LSFQSYTKAIDVWSVGCILAEL--LGGRPF  228
            L    +T   DVWS G +L E+  LG +P+
Sbjct  176  LKDGKFTSKSDVWSFGVLLWEIFTLGEQPY  205



Lambda      K        H        a         alpha
   0.322    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00035580

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  115     2e-32
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            100     1e-26


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 115 bits (290),  Expect = 2e-32, Method: Composition-based stats.
 Identities = 60/198 (30%), Positives = 81/198 (41%), Gaps = 50/198 (25%)

Query  23   YNVTKELGQGAYGIVCAATNVHTGEGVAIKKVTNVFSKKILAKRALREIKLLQHFRGHRN  82
            Y V ++LG G++G V  A +  TG+ VAIKK+     KK   K  LREIK+L+    H N
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLN-HPN  59

Query  83   ITCLYDMDIPRPDNFNETYLYEELMEC-DLAAIIRSGQPLTDAHFQSFIYQILCGLKYIH  141
            I  LYD      DN    YL  E +E   L  ++      ++   +  + QIL GL    
Sbjct  60   IVRLYDA-FEDKDNL---YLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL----  111

Query  142  SANVLHRDLKPGNLLVNADCELKICDFGLARGFSIDPEENAGYMTEYVATRWYRAPEIML  201
                                                  E+   +T +V T WY APE+ L
Sbjct  112  --------------------------------------ESGSSLTTFVGTPWYMAPEV-L  132

Query  202  SFQSYTKAS-VWSVGCIL  218
                Y     VWS+GCIL
Sbjct  133  GGNPYGPKVDVWSLGCIL  150


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 100 bits (252),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 85/196 (43%), Gaps = 16/196 (8%)

Query  27   KELGQGAYGIVCAATNVHTGEG----VAIKKVTNVFSKKILAKRALREIKLLQHFRGHRN  82
            ++LG+GA+G V   T    GE     VA+K +     ++      L E  +++    H N
Sbjct  5    EKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERED-FLEEASIMKKLD-HPN  62

Query  83   ITCLYDMDIPRPDNFNETYLYEELMEC-DLAAIIRS-GQPLTDAHFQSFIYQILCGLKYI  140
            I  L  +           Y+  E M   DL   +R   + LT     S   QI  G++Y+
Sbjct  63   IVKLLGVCTQGE----PLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYL  118

Query  141  HSANVLHRDLKPGNLLVNADCELKICDFGLARGFSIDPEENAGYMTEYVATRWYRAPEIM  200
             S N +HRDL   N LV+ +  +KI DFGL+R    D           +  +W  APE  
Sbjct  119  ESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKR-GGGKLPIKWM-APES-  175

Query  201  LSFQSYTKAS-VWSVG  215
            L    +T  S VWS G
Sbjct  176  LKDGKFTSKSDVWSFG  191



Lambda      K        H        a         alpha
   0.324    0.139    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0757    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00035581

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  82.3    3e-20
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            82.9    4e-20


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 82.3 bits (204),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 37/144 (26%), Positives = 54/144 (38%), Gaps = 44/144 (31%)

Query  13   YLYEELMEC-DLAAIIRSGQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNA  71
            YL  E +E   L  ++      ++   +  + QIL GL                      
Sbjct  74   YLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL----------------------  111

Query  72   DCELKICDFGLARGFSIDPEENAGYMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCIL  131
                                E+   +T +V T WY APE+ L    Y   +DVWS+GCIL
Sbjct  112  --------------------ESGSSLTTFVGTPWYMAPEV-LGGNPYGPKVDVWSLGCIL  150

Query  132  AELLGGRPFFKGRDYVDQLNQILH  155
             ELL G+P F G +  +    I+ 
Sbjct  151  YELLTGKPPFPGINGNEIYELIID  174


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 82.9 bits (206),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 46/132 (35%), Positives = 64/132 (48%), Gaps = 7/132 (5%)

Query  13   YLYEELMEC-DLAAIIRS-GQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVN  70
            Y+  E M   DL   +R   + LT     S   QI  G++Y+ S N +HRDL   N LV+
Sbjct  77   YIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLESKNFVHRDLAARNCLVS  136

Query  71   ADCELKICDFGLARGFSIDPEENAGYMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCI  130
             +  +KI DFGL+R    D           +  +W  APE  L    +T   DVWS G +
Sbjct  137  ENLVVKISDFGLSRDIYDDDYYRKR-GGGKLPIKWM-APES-LKDGKFTSKSDVWSFGVL  193

Query  131  LAEL--LGGRPF  140
            L E+  LG +P+
Sbjct  194  LWEIFTLGEQPY  205



Lambda      K        H        a         alpha
   0.323    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00031518

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  172     3e-52
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            107     2e-27


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 172 bits (439),  Expect = 3e-52, Method: Composition-based stats.
 Identities = 84/293 (29%), Positives = 120/293 (41%), Gaps = 77/293 (26%)

Query  23   YNVTKELGQGAYGIVCAATNVHTGEGVAIKKVTNVFSKKILAKRALREIKLLQHFRGHRN  82
            Y V ++LG G++G V  A +  TG+ VAIKK+     KK   K  LREIK+L+    H N
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLN-HPN  59

Query  83   ITCLYDMDIPRPDNFNETYLYEELMEC-DLAAIIRSGQPLTDAHFQSFIYQILCGLKYIH  141
            I  LYD      DN    YL  E +E   L  ++      ++   +  + QIL GL    
Sbjct  60   IVRLYDA-FEDKDNL---YLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL----  111

Query  142  SANVLHRDLKPGNLLVNADCELKICDFGLARGFSIDPEENAGYMTEYVATRWYRAPEIML  201
                                                  E+   +T +V T WY APE+ L
Sbjct  112  --------------------------------------ESGSSLTTFVGTPWYMAPEV-L  132

Query  202  SFQSYTKAIDVWSVGCILAELLGGRPFFKGRDYVDQLNQILHYLGTPNEETLSRIGSPRA  261
                Y   +DVWS+GCIL ELL G+P F G +  +    I+                   
Sbjct  133  GGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELIID------------------  174

Query  262  QEYVRNLPFMPKIPFQRLFPNANPDALDLLDRMLAFDPASRISVEEALEHPYL  314
                          F  L  N + +A DLL ++L  DP+ R++  +AL+HP+ 
Sbjct  175  ----------QPYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 107 bits (271),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 94/210 (45%), Gaps = 17/210 (8%)

Query  27   KELGQGAYGIVCAATNVHTGEG----VAIKKVTNVFSKKILAKRALREIKLLQHFRGHRN  82
            ++LG+GA+G V   T    GE     VA+K +     ++      L E  +++    H N
Sbjct  5    EKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERED-FLEEASIMKKLD-HPN  62

Query  83   ITCLYDMDIPRPDNFNETYLYEELMEC-DLAAIIRS-GQPLTDAHFQSFIYQILCGLKYI  140
            I  L  +           Y+  E M   DL   +R   + LT     S   QI  G++Y+
Sbjct  63   IVKLLGVCTQGE----PLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYL  118

Query  141  HSANVLHRDLKPGNLLVNADCELKICDFGLARGFSIDPEENAGYMTEYVATRWYRAPEIM  200
             S N +HRDL   N LV+ +  +KI DFGL+R    D           +  +W  APE  
Sbjct  119  ESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKR-GGGKLPIKWM-APES-  175

Query  201  LSFQSYTKAIDVWSVGCILAEL--LGGRPF  228
            L    +T   DVWS G +L E+  LG +P+
Sbjct  176  LKDGKFTSKSDVWSFGVLLWEIFTLGEQPY  205



Lambda      K        H        a         alpha
   0.322    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 520369570


Query= TCONS_00031519

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  98.9    3e-26
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            92.9    1e-23


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 98.9 bits (247),  Expect = 3e-26, Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 73/189 (39%), Gaps = 49/189 (26%)

Query  23   YNVTKELGQGAYGIVCAATNVHTGEGVAIKKVTNVFSKKILAKRALREIKLLQHFRGHRN  82
            Y V ++LG G++G V  A +  TG+ VAIKK+     KK   K  LREIK+L+    H N
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLN-HPN  59

Query  83   ITCLYDMDIPRPDNFNETYLYEELMEC-DLAAIIRSGQPLTDAHFQSFIYQILCGLKYIH  141
            I  LYD      DN    YL  E +E   L  ++      ++   +  + QIL GL    
Sbjct  60   IVRLYDA-FEDKDNL---YLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL----  111

Query  142  SANVLHRDLKPGNLLVNADCELKICDFGLARGFSIDPEENAGYMTEYVATRWYRAPEIML  201
                                                  E+   +T +V T WY APE+ L
Sbjct  112  --------------------------------------ESGSSLTTFVGTPWYMAPEV-L  132

Query  202  SFQSYTKST  210
                Y    
Sbjct  133  GGNPYGPKV  141


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 92.9 bits (232),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 16/190 (8%)

Query  27   KELGQGAYGIVCAATNVHTGEG----VAIKKVTNVFSKKILAKRALREIKLLQHFRGHRN  82
            ++LG+GA+G V   T    GE     VA+K +     ++      L E  +++    H N
Sbjct  5    EKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERED-FLEEASIMKKLD-HPN  62

Query  83   ITCLYDMDIPRPDNFNETYLYEELMEC-DLAAIIRS-GQPLTDAHFQSFIYQILCGLKYI  140
            I  L  +           Y+  E M   DL   +R   + LT     S   QI  G++Y+
Sbjct  63   IVKLLGVCTQGE----PLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYL  118

Query  141  HSANVLHRDLKPGNLLVNADCELKICDFGLARGFSIDPEENAGYMTEYVATRWYRAPEIM  200
             S N +HRDL   N LV+ +  +KI DFGL+R    D           +  +W  APE  
Sbjct  119  ESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKR-GGGKLPIKWM-APES-  175

Query  201  LSFQSYT-KS  209
            L    +T KS
Sbjct  176  LKDGKFTSKS  185



Lambda      K        H        a         alpha
   0.324    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00035582

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00031522

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401984 pfam10176, DUF2370, Protein of unknown function (DUF23...  216     2e-73


>CDD:401984 pfam10176, DUF2370, Protein of unknown function (DUF2370).  This 
family is conserved from fungi to humans. The human member 
is annotated as a Golgi-associated protein-Nedd4 WW domain-binding 
protein but this could not be confirmed.
Length=215

 Score = 216 bits (553),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 82/140 (59%), Positives = 101/140 (72%), Gaps = 15/140 (11%)

Query  1    MISMSFQLVGFLLTYLLHTTHAAKNGSRAGLGLTLVQYGFYMKGGSDGGSDGGA---DYV  57
            ++SMSFQ VGFLLTYLLHTTHAAK GSRAGLG+TL+QYGFYM+  +     G       V
Sbjct  80   LVSMSFQFVGFLLTYLLHTTHAAKQGSRAGLGITLIQYGFYMRPSNVESKVGKDKGPGRV  139

Query  58   PPPDPNSHNFDPTSVSENSGGNSGSGAISDI--------TTSEWISYVLMIVGWFILIRA  109
             P DPNSH+FDP++V    GG      ISD+         +S W++YVLMI+GWFILI++
Sbjct  140  EPSDPNSHDFDPSAV----GGGGDGYGISDLHLQSAPTNQSSPWLAYVLMILGWFILIKS  195

Query  110  ISDFLRARRHEQLVLQSPER  129
            ISD+LR +RHEQLVLQSP+R
Sbjct  196  ISDYLRVKRHEQLVLQSPDR  215



Lambda      K        H        a         alpha
   0.317    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00031521

Length=146
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401984 pfam10176, DUF2370, Protein of unknown function (DUF23...  216     2e-73


>CDD:401984 pfam10176, DUF2370, Protein of unknown function (DUF2370).  This 
family is conserved from fungi to humans. The human member 
is annotated as a Golgi-associated protein-Nedd4 WW domain-binding 
protein but this could not be confirmed.
Length=215

 Score = 216 bits (553),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 82/140 (59%), Positives = 101/140 (72%), Gaps = 15/140 (11%)

Query  1    MISMSFQLVGFLLTYLLHTTHAAKNGSRAGLGLTLVQYGFYMKGGSDGGSDGGA---DYV  57
            ++SMSFQ VGFLLTYLLHTTHAAK GSRAGLG+TL+QYGFYM+  +     G       V
Sbjct  80   LVSMSFQFVGFLLTYLLHTTHAAKQGSRAGLGITLIQYGFYMRPSNVESKVGKDKGPGRV  139

Query  58   PPPDPNSHNFDPTSVSENSGGNSGSGAISDI--------TTSEWISYVLMIVGWFILIRA  109
             P DPNSH+FDP++V    GG      ISD+         +S W++YVLMI+GWFILI++
Sbjct  140  EPSDPNSHDFDPSAV----GGGGDGYGISDLHLQSAPTNQSSPWLAYVLMILGWFILIKS  195

Query  110  ISDFLRARRHEQLVLQSPER  129
            ISD+LR +RHEQLVLQSP+R
Sbjct  196  ISDYLRVKRHEQLVLQSPDR  215



Lambda      K        H        a         alpha
   0.317    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00031523

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00031525

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00035583

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00035584

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00031526

Length=393


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 472215968


Query= TCONS_00031527

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  180     7e-55


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 180 bits (459),  Expect = 7e-55, Method: Composition-based stats.
 Identities = 96/304 (32%), Positives = 149/304 (49%), Gaps = 13/304 (4%)

Query  46   SLIAAGKVGGLILFGENIDDNLPATIATIQKTYASSPDYNGTPLLIMTDQEGGKVRRLPG  105
             L+    VGG+ILFG N++D +  +     +  A      G PLL+  DQEGG+V+R   
Sbjct  25   ELLKDYHVGGIILFGGNLEDWVQLSDLIRYQRQAVEESRLGIPLLVAVDQEGGRVQRFGE  84

Query  106  GPTLSAKQV-GLSSDPAATAGETGTEAATTLAQYGVNANLAPVLGVYRSAGDFLDEYGRS  164
            G    +      +SDP   A + G   A  +   G++ + APV+ V R     + E  RS
Sbjct  85   GTMFPSAIALAATSDPDL-AKQMGWAMAREMRALGIDWDFAPVVDVARDPRWGIGE--RS  141

Query  165  YGNSSELVASCAEAFIRNQQARKVIATAKHFPGLGAAGADANTDLVPVQIDLGLEELRRV  224
            +    +LV++ A A I   Q   V+AT KHFPG G    D++ +          + LR V
Sbjct  142  FSEDPQLVSALAGAMIEGLQGAGVLATVKHFPGHGHGATDSHKETPTTPRPE--QRLRTV  199

Query  225  DEAPYRAAIAAGVEMVMASWAVYPALDAKPAGLSEKWIRGELRQRHGFQGVTITDAIEAG  284
            D  P++AAI AGV+ VMA+  +Y +LD  PA  S+  +   LR++ GF G+ ++D +   
Sbjct  200  DLLPFQAAIEAGVDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMK  259

Query  285  ALRAYGDDAARGVRAAQAGMDLLLASARNVTQGEAIVDALTAALEHGELDTEEFAAATAR  344
             +  +G  A    RA +AG+D+ L         E     L   +++G+L      AA  R
Sbjct  260  GIADHGGPAEAVRRALEAGVDIALVP-------EERTKYLKKVVKNGKLPMARIDAAVRR  312

Query  345  IMAL  348
            ++ L
Sbjct  313  VLRL  316



Lambda      K        H        a         alpha
   0.315    0.130    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00031528

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463781 pfam13088, BNR_2, BNR repeat-like domain. This family ...  62.7    1e-11


>CDD:463781 pfam13088, BNR_2, BNR repeat-like domain.  This family of proteins 
contains BNR-like repeats suggesting these proteins may 
act as sialidases.
Length=280

 Score = 62.7 bits (153),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 98/273 (36%), Gaps = 39/273 (14%)

Query  117  SGAGTWGNPTPVVDDDNTIYLFLS-WNGATYSQNGKDVLPDGTV---TKKIDS--TWEGR  170
             G+  W  P  V D +          N   +        P GT+    K   S   W G 
Sbjct  27   PGSNKWSAPQVVADGEQLGRYIRKLGNPVLF------RDPGGTLVLFYKVGVSPGGWAGS  80

Query  171  RHLYLTESRDDGNTWSKPVDLTKELTPDGWAWDAVGPGNG--IRLTTGELVIPAMGRNII  228
            +   +T S D+G TWS P  L     P G   +  GP     ++L  G L++P+      
Sbjct  81   KIYRIT-SSDNGRTWSAPRRL-----PPGPFLNISGPVKNKPVQLADGRLLLPSYHELAG  134

Query  229  GRGA------PGNRTWSVQRLSGAGA---EGTIVQTPDGKLYRNDRPSQKGYRMVARGTL  279
               A       G  TW   R   A +   + +++   DG+L    R SQ+G  + +  T 
Sbjct  135  KWAAHLELSDDGGVTWRKGRPDNAISGELQPSVLVLADGRLVMLFR-SQEGAILASESTD  193

Query  280  EGFGAFAPDA-GLPDPACQGSVLRYNSDAPARTIFLN-SASGTSRRAMRVRISYDADAKK  337
             G     P+   LP+P      +          +  N   +G  R  + + +S D   K 
Sbjct  194  GGLTWSPPEPTNLPNPNSGIDAVNLPDGRLL--LVYNPPNAGKPRGPLALALSED-GGKS  250

Query  338  FNYGRKLEDAKVSGAGHEGGYSSMTKTGDYKIG  370
            +     LED    G G E  Y S+ +  D  + 
Sbjct  251  WEEVLTLED----GPGDEYSYPSLIQARDGYLH  279



Lambda      K        H        a         alpha
   0.316    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 492409414


Query= TCONS_00031529

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 ...  180     7e-55


>CDD:395747 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal 
domain.  
Length=316

 Score = 180 bits (459),  Expect = 7e-55, Method: Composition-based stats.
 Identities = 96/304 (32%), Positives = 149/304 (49%), Gaps = 13/304 (4%)

Query  46   SLIAAGKVGGLILFGENIDDNLPATIATIQKTYASSPDYNGTPLLIMTDQEGGKVRRLPG  105
             L+    VGG+ILFG N++D +  +     +  A      G PLL+  DQEGG+V+R   
Sbjct  25   ELLKDYHVGGIILFGGNLEDWVQLSDLIRYQRQAVEESRLGIPLLVAVDQEGGRVQRFGE  84

Query  106  GPTLSAKQV-GLSSDPAATAGETGTEAATTLAQYGVNANLAPVLGVYRSAGDFLDEYGRS  164
            G    +      +SDP   A + G   A  +   G++ + APV+ V R     + E  RS
Sbjct  85   GTMFPSAIALAATSDPDL-AKQMGWAMAREMRALGIDWDFAPVVDVARDPRWGIGE--RS  141

Query  165  YGNSSELVASCAEAFIRNQQARKVIATAKHFPGLGAAGADANTDLVPVQIDLGLEELRRV  224
            +    +LV++ A A I   Q   V+AT KHFPG G    D++ +          + LR V
Sbjct  142  FSEDPQLVSALAGAMIEGLQGAGVLATVKHFPGHGHGATDSHKETPTTPRPE--QRLRTV  199

Query  225  DEAPYRAAIAAGVEMVMASWAVYPALDAKPAGLSEKWIRGELRQRHGFQGVTITDAIEAG  284
            D  P++AAI AGV+ VMA+  +Y +LD  PA  S+  +   LR++ GF G+ ++D +   
Sbjct  200  DLLPFQAAIEAGVDAVMAAHVIYSSLDGTPATGSKYLLTDVLRKKWGFDGIVVSDDLSMK  259

Query  285  ALRAYGDDAARGVRAAQAGMDLLLASARNVTQGEAIVDALTAALEHGELDTEEFAAATAR  344
             +  +G  A    RA +AG+D+ L         E     L   +++G+L      AA  R
Sbjct  260  GIADHGGPAEAVRRALEAGVDIALVP-------EERTKYLKKVVKNGKLPMARIDAAVRR  312

Query  345  IMAL  348
            ++ L
Sbjct  313  VLRL  316



Lambda      K        H        a         alpha
   0.315    0.130    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00031530

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            80.2    6e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 80.2 bits (198),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 133/401 (33%), Gaps = 60/401 (15%)

Query  52   IVMSQILAEYFISGSNILLPTLIS-ALDIPLASSIWPSTALSLAVTSTLLIYGRVADMYG  110
            + ++  LA    S     LP L++  L I         T  SL       + GR++D +G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  111  GFACYLFGATWLAISSILAGFSQTWLMLVICRALQGLALAAFLPSGMMILGSVYRPGPRK  170
                 L G    A+  +L  F+ +  +L++ R LQGL   A  P+ + ++   + P   +
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWF-PPEER  119

Query  171  NLVFSVYGACAALGFFVGIFFSGLSGRFLTWRWYFFIGGILAAVTAVTSFFSIPSDFAER  230
                 +  A   LG  +G    GL      WR  F I  IL+ + AV      P   ++R
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKR  179

Query  231  RKTRKVGMDWLGGGLLVPGLVLLVFAIAGSAHAPRQWATAYIDVCLALGVVLLAAFVYVE  290
             K                                                         E
Sbjct  180  PKPA-------------------------------------------------------E  184

Query  291  GWVVGDPLVTADVFAVKYLKPLLFSLVCLYGSLGIFLLYGALYMQGIMNASPLQIVAWTV  350
               +   +    +     L  LL +L+    +    L Y  LY + ++  S L       
Sbjct  185  EARLSLIVAWKALLRDPVLW-LLLALLLFGFAFFGLLTYLPLYQE-VLGLSALLAGLLLG  242

Query  351  PMAFGGLLISTVGGFIMHRIPGTILMLISCLGYLGSGLFFALIPENGGYWAFVFPAMICG  410
                 G +   + G +  R+     +L++ L  + + L   L+         +   ++ G
Sbjct  243  LGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLG  302

Query  411  TIGIDISFNVTNIFITSNMPLEKQGLAGALINCTLHLGIAL  451
              G  + F   N  ++   P E++G A  L N    LG AL
Sbjct  303  -FGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL  342



Lambda      K        H        a         alpha
   0.328    0.143    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00035585

Length=239


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00031531

Length=467


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 578206408


Query= TCONS_00031532

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            69.0    2e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 69.0 bits (169),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 61/302 (20%), Positives = 111/302 (37%), Gaps = 27/302 (9%)

Query  2    MFAFGLCTILVVAVFNFSGLLAIRWFLGMAESAFFPLVIYYLTTFYRRGELARRLAIFYA  61
            +  F L  +L++   +   LL +R   G+   A FP  +  +  ++   E  R L +  A
Sbjct  69   LLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSA  128

Query  62   AQSIASAFSGLLAFGVFRIQSGPLASWRYLFLIEGGGTILVALFTLWYLPRSAAHASFLT  121
               + +A   LL  G+       L  WR  FLI    ++L A+  L  LPR    +    
Sbjct  129  GFGLGAALGPLLG-GLL----ASLFGWRAAFLILAILSLLAAV--LLLLPRPPPESKRPK  181

Query  122  PDEKQLAYLRLQRDSSAIVNEKLNLRDAFKIFRHGTSWLILAIQICLGVPLQSVQLFLPS  181
            P E+                 +L+L  A+K         +L   +  G     +  +LP 
Sbjct  182  PAEE----------------ARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPL  225

Query  182  IIKRLGYDTVKTNLYTVAPNVSGAAMLLILAFCSD-WTRWRFPFVALGFLFTFIGFVIYA  240
              + LG   +   L      + GA   L+L   SD   R R   +AL  L      ++  
Sbjct  226  YQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLL  285

Query  241  AIDVEADINVAYFASFMMTWGTSAPSVLLDVWYNNNIANEGRRVVLTSIAVPVANLMGVV  300
            ++ + +   +         +G   P++   V   +++A +  R   + +     +L G +
Sbjct  286  SLTLSSLWLLLALLLLGFGFGLVFPALNALV---SDLAPKEERGTASGLYNTAGSLGGAL  342

Query  301  SS  302
              
Sbjct  343  GP  344



Lambda      K        H        a         alpha
   0.329    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453018240


Query= TCONS_00031533

Length=225


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 232866012


Query= TCONS_00031534

Length=325


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 379043084


Query= TCONS_00035587

Length=511


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 635907720


Query= TCONS_00035588

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            59.7    1e-10


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 59.7 bits (145),  Expect = 1e-10, Method: Composition-based stats.
 Identities = 53/269 (20%), Positives = 96/269 (36%), Gaps = 24/269 (9%)

Query  2    MFAFGLCTILVVAVFNFSGLLAIRWFLGMAESAFFPLVIYYLTTFYRRGELARRLAIFYA  61
            +  F L  +L++   +   LL +R   G+   A FP  +  +  ++   E  R L +  A
Sbjct  69   LLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSA  128

Query  62   AQSIASAFSGLLAFGVFRIQSGPLASWRYLFLIEGGGTILVALFTLWYLPRSAAHASFLT  121
               + +A   LL   +       L  WR  FLI    ++L A+  L  LPR    +    
Sbjct  129  GFGLGAALGPLLGGLL-----ASLFGWRAAFLILAILSLLAAV--LLLLPRPPPESKRPK  181

Query  122  PDEKQLAYLRLQRDSSAIVNEKLNLRDAFKIFRHGTSWLILAIQICLGVPLQSVQLFLPS  181
            P E+                 +L+L  A+K         +L   +  G     +  +LP 
Sbjct  182  PAEE----------------ARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPL  225

Query  182  IIKRLGYDTVKTNLYTVAPNVSGAAMLLILAFCSD-WTRWRFPFVALGFLFTFIGFVIYA  240
              + LG   +   L      + GA   L+L   SD   R R   +AL  L      ++  
Sbjct  226  YQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLL  285

Query  241  AIDVEADINVAYFASFMMTWYVLISLSLS  269
            ++ + +   +         + ++     +
Sbjct  286  SLTLSSLWLLLALLLLGFGFGLVFPALNA  314



Lambda      K        H        a         alpha
   0.332    0.143    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00031535

Length=692


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 883399210


Query= TCONS_00031537

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            69.0    2e-13


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 69.0 bits (169),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 61/302 (20%), Positives = 111/302 (37%), Gaps = 27/302 (9%)

Query  2    MFAFGLCTILVVAVFNFSGLLAIRWFLGMAESAFFPLVIYYLTTFYRRGELARRLAIFYA  61
            +  F L  +L++   +   LL +R   G+   A FP  +  +  ++   E  R L +  A
Sbjct  69   LLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSA  128

Query  62   AQSIASAFSGLLAFGVFRIQSGPLASWRYLFLIEGGGTILVALFTLWYLPRSAAHASFLT  121
               + +A   LL  G+       L  WR  FLI    ++L A+  L  LPR    +    
Sbjct  129  GFGLGAALGPLLG-GLL----ASLFGWRAAFLILAILSLLAAV--LLLLPRPPPESKRPK  181

Query  122  PDEKQLAYLRLQRDSSAIVNEKLNLRDAFKIFRHGTSWLILAIQICLGVPLQSVQLFLPS  181
            P E+                 +L+L  A+K         +L   +  G     +  +LP 
Sbjct  182  PAEE----------------ARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPL  225

Query  182  IIKRLGYDTVKTNLYTVAPNVSGAAMLLILAFCSD-WTRWRFPFVALGFLFTFIGFVIYA  240
              + LG   +   L      + GA   L+L   SD   R R   +AL  L      ++  
Sbjct  226  YQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLL  285

Query  241  AIDVEADINVAYFASFMMTWGTSAPSVLLDVWYNNNIANEGRRVVLTSIAVPVANLMGVV  300
            ++ + +   +         +G   P++   V   +++A +  R   + +     +L G +
Sbjct  286  SLTLSSLWLLLALLLLGFGFGLVFPALNALV---SDLAPKEERGTASGLYNTAGSLGGAL  342

Query  301  SS  302
              
Sbjct  343  GP  344



Lambda      K        H        a         alpha
   0.329    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453018240


Query= TCONS_00031539

Length=349


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00031538

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            71.7    2e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 71.7 bits (176),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 97/269 (36%), Gaps = 24/269 (9%)

Query  2    MFAFGLCTILVVAVFNFSGLLAIRWFLGMAESAFFPLVIYYLTTFYRRGELARRLAIFYA  61
            +  F L  +L++   +   LL +R   G+   A FP  +  +  ++   E  R L +  A
Sbjct  69   LLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSA  128

Query  62   AQSIASAFSGLLAFGVFRIQSGPLASWRYLFLIEGGGTILVALFTLWYLPRSAAHASFLT  121
               + +A   LL  G+       L  WR  FLI    ++L A+  L  LPR    +    
Sbjct  129  GFGLGAALGPLLG-GLL----ASLFGWRAAFLILAILSLLAAV--LLLLPRPPPESKRPK  181

Query  122  PDEKQLAYLRLQRDSSAIVNEKLNLRDAFKIFRHGTSWLILAIQICLGVPLQSVQLFLPS  181
            P E+                 +L+L  A+K         +L   +  G     +  +LP 
Sbjct  182  PAEE----------------ARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPL  225

Query  182  IIKRLGYDTVKTNLYTVAPNVSGAAMLLILAFCSD-WTRWRFPFVALGFLFTFIGFVIYA  240
              + LG   +   L      + GA   L+L   SD   R R   +AL  L      ++  
Sbjct  226  YQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLL  285

Query  241  AIDVEADINVAYFASFMMTWYVLISLSLS  269
            ++ + +   +         + ++     +
Sbjct  286  SLTLSSLWLLLALLLLGFGFGLVFPALNA  314



Lambda      K        H        a         alpha
   0.330    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00035589

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            64.4    5e-12


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 64.4 bits (157),  Expect = 5e-12, Method: Composition-based stats.
 Identities = 61/304 (20%), Positives = 111/304 (37%), Gaps = 29/304 (10%)

Query  2    MFAFGLCTILVVAVFNFSGLLAIRWFLGMAESAFFPLVIYYLTTYVFYRRGELARRLAIF  61
            +  F L  +L++   +   LL +R   G+   A FP  +  +  +  +   E  R L + 
Sbjct  69   LLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADW--FPPEERGRALGLV  126

Query  62   YAAQSIASAFSGLLAFGVFRIQSGPLASWRYLFLIEGGGTILVALFTLWYLPRSAAHASF  121
             A   + +A   LL  G+       L  WR  FLI    ++L A+  L  LPR    +  
Sbjct  127  SAGFGLGAALGPLLG-GLL----ASLFGWRAAFLILAILSLLAAV--LLLLPRPPPESKR  179

Query  122  LTPDEKQLAYLRLQRDSSAIVNEKLNLRDAFKIFRHGTSWLILAIQICLGVPLQSVQLFL  181
              P E+                 +L+L  A+K         +L   +  G     +  +L
Sbjct  180  PKPAEE----------------ARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYL  223

Query  182  PSIIKRLGYDTVKTNLYTVAPNVSGAAMLLILAFCSD-WTRWRFPFVALGFLFTFIGFVI  240
            P   + LG   +   L      + GA   L+L   SD   R R   +AL  L      ++
Sbjct  224  PLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLL  283

Query  241  YAAIDVEADINVAYFASFMMTWGTSAPSVLLDVWYNNNIANEGRRVVLTSIAVPVANLMG  300
              ++ + +   +         +G   P++   V   +++A +  R   + +     +L G
Sbjct  284  LLSLTLSSLWLLLALLLLGFGFGLVFPALNALV---SDLAPKEERGTASGLYNTAGSLGG  340

Query  301  VVSS  304
             +  
Sbjct  341  ALGP  344



Lambda      K        H        a         alpha
   0.329    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00031540

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            105     1e-25


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 105 bits (265),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 140/370 (38%), Gaps = 39/370 (11%)

Query  93   LAVMYLFNSLDKSNVGNAKTAGLEKTLNLKGNEYNLILSIFFIPYVLTAPFLGILGKKYG  152
            L +     +L +S +G A    L + L +   E  L+L++F + Y L  P  G L  ++G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  153  PNRAAVHDVCLWAVG------------LLAIRWFLGMAESAFFPLVIYYLTTFYRRGELA  200
              R  +  + L+A+G            LL +R   G+   A FP  +  +  ++   E  
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  201  RRLAIFYAAQSIASAFSGLLAFGVFRIQSGPLASWRYLFLIEGGGTILVALFTLWYLPRS  260
            R L +  A   + +A   LL  G+       L  WR  FLI    ++L A+  L  LPR 
Sbjct  121  RALGLVSAGFGLGAALGPLLG-GLL----ASLFGWRAAFLILAILSLLAAV--LLLLPRP  173

Query  261  AAHASFLTPDEKQLAYLRLQRDSSAIVNEKLNLRDAFKIFRHGTSWLILAIQICLGVPLQ  320
               +    P E+                 +L+L  A+K         +L   +  G    
Sbjct  174  PPESKRPKPAEE----------------ARLSLIVAWKALLRDPVLWLLLALLLFGFAFF  217

Query  321  SVQLFLPSIIKRLGYDTVKTNLYTVAPNVSGAAMLLILAFCSD-WTRWRFPFVALGFLFT  379
             +  +LP   + LG   +   L      + GA   L+L   SD   R R   +AL  L  
Sbjct  218  GLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLIL  277

Query  380  FIGFVIYAAIDVEADINVAYFASFMMTWGTSAPSVLLDVWYNNNIANEGRRVVLTSIAVP  439
                ++  ++ + +   +         +G   P++   V   +++A +  R   + +   
Sbjct  278  AALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALV---SDLAPKEERGTASGLYNT  334

Query  440  VANLMGVVSS  449
              +L G +  
Sbjct  335  AGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.139    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 654076512


Query= TCONS_00035590

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            84.0    1e-18


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 84.0 bits (208),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 73/336 (22%), Positives = 126/336 (38%), Gaps = 36/336 (11%)

Query  48   LAVMYLFNSLDKSNVGNAKTAGLEKTLNLKGNEYNLILSIFFIPYVLTAPFLGILGKKYG  107
            L +     +L +S +G A    L + L +   E  L+L++F + Y L  P  G L  ++G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  108  PNRAAVHDVCLWAVG------------LLAIRWFLGMAESAFFPLVIYYLTTFYRRGELA  155
              R  +  + L+A+G            LL +R   G+   A FP  +  +  ++   E  
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  156  RRLAIFYAAQSIASAFSGLLAFGVFRIQSGPLASWRYLFLIEGGGTILVALFTLWYLPRS  215
            R L +  A   + +A   LL  G+       L  WR  FLI    ++L A+  L  LPR 
Sbjct  121  RALGLVSAGFGLGAALGPLLG-GLL----ASLFGWRAAFLILAILSLLAAV--LLLLPRP  173

Query  216  AAHASFLTPDEKQLAYLRLQRDSSAIVNEKLNLRDAFKIFRHGTSWLILAIQICLGVPLQ  275
               +    P E+                 +L+L  A+K         +L   +  G    
Sbjct  174  PPESKRPKPAEE----------------ARLSLIVAWKALLRDPVLWLLLALLLFGFAFF  217

Query  276  SVQLFLPSIIKRLGYDTVKTNLYTVAPNVSGAAMLLILAFCSD-WTRWRFPFVALGFLFT  334
             +  +LP   + LG   +   L      + GA   L+L   SD   R R   +AL  L  
Sbjct  218  GLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLIL  277

Query  335  FIGFVIYAAIDVEADINVAYFASFMMTWYTSAPSVL  370
                ++  ++ + +   +         +    P++ 
Sbjct  278  AALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALN  313



Lambda      K        H        a         alpha
   0.328    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00031541

Length=100
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family ...  100     1e-27


>CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28.  Glycosyl 
hydrolase family 28 includes polygalacturonase EC:3.2.1.15 
as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. 
These enzymes are important in cell wall metabolism.
Length=319

 Score = 100 bits (252),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 50/83 (60%), Positives = 61/83 (73%), Gaps = 2/83 (2%)

Query  1    MYAHSLEDSTITGLSIKNTPVQAISVQ-ATNLYLIDITIDNSDGDDNGGHNTDGFDISES  59
            +Y H +++S ITGL+IKN+PV   SVQ  T+L + DITIDNS GD NG HNTDGFD+  S
Sbjct  86   IYIHKVKNSKITGLNIKNSPVFHFSVQSGTDLTISDITIDNSAGDSNG-HNTDGFDVGSS  144

Query  60   TGVYIRGATVKNQDDCIAINSGE  82
            +GV I    + NQDDCIAINSG 
Sbjct  145  SGVTISNTNIYNQDDCIAINSGS  167



Lambda      K        H        a         alpha
   0.317    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00031545

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain                     180     8e-56
CDD:461043 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain. ...  65.0    4e-14
CDD:463965 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain. Th...  59.6    2e-11


>CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain.  
Length=151

 Score = 180 bits (460),  Expect = 8e-56, Method: Composition-based stats.
 Identities = 69/151 (46%), Positives = 94/151 (62%), Gaps = 6/151 (4%)

Query  191  MGKAYVHGVDRLGRPIVVIRVQLHKPGAQSEETLNQFIIHVIESVRLLLVP-PVETAAVV  249
             GK Y+HG D+ GRP++ +R+  H P   SEE L +F++ V+E   LL+    VE   V+
Sbjct  1    GGKVYLHGRDKEGRPVLYLRLGRHDPKKSSEEELVRFLVLVLERALLLMPEGQVEGLTVI  60

Query  250  FDMTGFGLSNME---YPPVKFIIKCFEANYPESLGVLLIHNAPWVFSGIWRLIKGWMDPV  306
             D+ G  LSNM+      +K IIK  + NYPE LG +LI NAPW+F+ IW+LIK ++DP 
Sbjct  61   IDLKGLSLSNMDWWSISLLKKIIKILQDNYPERLGKILIVNAPWIFNTIWKLIKPFLDPK  120

Query  307  IVSKIQFTKT--IADLEKFIPREQIIKELGG  335
               KI F K     +LEK+IP EQ+ KE GG
Sbjct  121  TREKIVFLKNSNEEELEKYIPPEQLPKEYGG  151


>CDD:461043 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain.  This all-alpha 
domain is found to the N-terminus of pfam00650.
Length=53

 Score = 65.0 bits (159),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 29/53 (55%), Gaps = 1/53 (2%)

Query  91   IKQVQHILTQITPEEIRDGLLSTAKHDHPDALLLRFLRARKWDVTKAFVMMLD  143
              ++  +L     E  R+    T + DH D  LLRFLRARKWDV KA  M+ D
Sbjct  2    YDELLELLKDEDEETDREKFWLT-REDHDDVCLLRFLRARKWDVEKAIKMLED  53


>CDD:463965 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain.  This family 
includes divergent members of the CRAL-TRIO domain family. 
This family includes ECM25 that contains a divergent CRAL-TRIO 
domain identified by Gallego and colleagues.
Length=140

 Score = 59.6 bits (145),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 28/148 (19%), Positives = 58/148 (39%), Gaps = 16/148 (11%)

Query  203  GRPIVVI---RVQLHKPGAQSEETLNQFIIHVIESVRLLLVPPVETAAVVFDMTGFGLSN  259
            GRP++V     +          + L  +++  +     L   P     VV D TG    N
Sbjct  1    GRPVLVFISKLLPSRPASLDDLDRLLFYLLKTL--SEKLKGKPFV---VVVDHTGVTSEN  55

Query  260  MEYPPVKFIIKCFEA---NYPESLGVLLIHNAPWVFSGI-WRLIKGWMDPVIVSKIQFTK  315
              +P + F+ K ++     + ++L  + + +           L        +  K+ +  
Sbjct  56   --FPSLSFLKKAYDLLPRAFKKNLKAVYVVHPSTFLRTFLKTLGSLLGSKKLRKKVHYVS  113

Query  316  TIADLEKFIPREQIIKELGGTEDWTYEY  343
            ++++L + I REQ+  EL G    +Y+ 
Sbjct  114  SLSELWEGIDREQLPTELPGV--LSYDE  139



Lambda      K        H        a         alpha
   0.318    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 581273816


Query= TCONS_00031542

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family ...  305     3e-105


>CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28.  Glycosyl 
hydrolase family 28 includes polygalacturonase EC:3.2.1.15 
as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. 
These enzymes are important in cell wall metabolism.
Length=319

 Score = 305 bits (783),  Expect = 3e-105, Method: Composition-based stats.
 Identities = 156/235 (66%), Positives = 184/235 (78%), Gaps = 2/235 (1%)

Query  1    MYAHSLEDSTITGLSIKNTPVQAISVQ-ATNLYLIDITIDNSDGDDNGGHNTDGFDISES  59
            +Y H +++S ITGL+IKN+PV   SVQ  T+L + DITIDNS GD NG HNTDGFD+  S
Sbjct  86   IYIHKVKNSKITGLNIKNSPVFHFSVQSGTDLTISDITIDNSAGDSNG-HNTDGFDVGSS  144

Query  60   TGVYIRGATVKNQDDCIAINSGENIEFSGGTCSGGHGLSIGSVGGRDDNTVKNVTITDST  119
            +GV I    + NQDDCIAINSG NI  +  TC GGHG+SIGSVGGR DNTVKNVT+ DST
Sbjct  145  SGVTISNTNIYNQDDCIAINSGSNISITNVTCGGGHGISIGSVGGRSDNTVKNVTVKDST  204

Query  120  VTDSANGVRIKTVYDATGSVSQVTYSNIKLSGITDYGIVIEQDYENGSPTGTPTTGVPIT  179
            V +S NGVRIKT+  ATG+VS +TY NI LS I+ YGIVI+QDYENG PTG PT+GV I+
Sbjct  205  VVNSDNGVRIKTISGATGTVSNITYENIVLSNISKYGIVIDQDYENGEPTGKPTSGVKIS  264

Query  180  DLTIDGVTGTVESDAVEVYILCGDGSCSDWTWEGVDITGGEKSSKCENVPSGASC  234
            D+T   VTGTV S A  VY+LCGDGSCS WTW GV+ITGG+ +SKC+NVPSGASC
Sbjct  265  DITFKNVTGTVASSATAVYLLCGDGSCSGWTWSGVNITGGKSTSKCKNVPSGASC  319



Lambda      K        H        a         alpha
   0.309    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0632    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00031543

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family ...  414     5e-146


>CDD:425588 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28.  Glycosyl 
hydrolase family 28 includes polygalacturonase EC:3.2.1.15 
as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. 
These enzymes are important in cell wall metabolism.
Length=319

 Score = 414 bits (1065),  Expect = 5e-146, Method: Composition-based stats.
 Identities = 210/319 (66%), Positives = 245/319 (77%), Gaps = 4/319 (1%)

Query  53   IVLDNIEVPAGETLDLSDVDDGTTIVFEGTTTFGYKEWSGPLIRFGGKDITIKQNSGAVI  112
            IVL  I VPAG TLDL+ +  GTT+ FEGTTTFGYKEW+G LI   G  IT+   SG  I
Sbjct  2    IVLSQILVPAGFTLDLTGLTSGTTVTFEGTTTFGYKEWNGKLIWISGSSITVTGASGGTI  61

Query  113  DGEGSRWWDGEGT--NGGKTKPKFMYAHSLEDSTITGLSIKNTPVQAISVQ-ATNLYLID  169
            DG+G RWWDG+GT  NGGK KPKF+Y H +++S ITGL+IKN+PV   SVQ  T+L + D
Sbjct  62   DGQGQRWWDGKGTKKNGGKKKPKFIYIHKVKNSKITGLNIKNSPVFHFSVQSGTDLTISD  121

Query  170  ITIDNSDGDDNGGHNTDGFDISESTGVYIRGATVKNQDDCIAINSGENIEFSGGTCSGGH  229
            ITIDNS GD NG HNTDGFD+  S+GV I    + NQDDCIAINSG NI  +  TC GGH
Sbjct  122  ITIDNSAGDSNG-HNTDGFDVGSSSGVTISNTNIYNQDDCIAINSGSNISITNVTCGGGH  180

Query  230  GLSIGSVGGRDDNTVKNVTITDSTVTDSANGVRIKTVYDATGSVSQVTYSNIKLSGITDY  289
            G+SIGSVGGR DNTVKNVT+ DSTV +S NGVRIKT+  ATG+VS +TY NI LS I+ Y
Sbjct  181  GISIGSVGGRSDNTVKNVTVKDSTVVNSDNGVRIKTISGATGTVSNITYENIVLSNISKY  240

Query  290  GIVIEQDYENGSPTGTPTTGVPITDLTIDGVTGTVESDAVEVYILCGDGSCSDWTWEGVD  349
            GIVI+QDYENG PTG PT+GV I+D+T   VTGTV S A  VY+LCGDGSCS WTW GV+
Sbjct  241  GIVIDQDYENGEPTGKPTSGVKISDITFKNVTGTVASSATAVYLLCGDGSCSGWTWSGVN  300

Query  350  ITGGEKSSKCENVPSGASC  368
            ITGG+ +SKC+NVPSGASC
Sbjct  301  ITGGKSTSKCKNVPSGASC  319



Lambda      K        H        a         alpha
   0.310    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 440434400


Query= TCONS_00031544

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461043 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain. ...  65.0    9e-15
CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain                     62.7    7e-13


>CDD:461043 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain.  This all-alpha 
domain is found to the N-terminus of pfam00650.
Length=53

 Score = 65.0 bits (159),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 29/53 (55%), Gaps = 1/53 (2%)

Query  91   IKQVQHILTQITPEEIRDGLLSTAKHDHPDALLLRFLRARKWDVTKAFVMMLD  143
              ++  +L     E  R+    T + DH D  LLRFLRARKWDV KA  M+ D
Sbjct  2    YDELLELLKDEDEETDREKFWLT-REDHDDVCLLRFLRARKWDVEKAIKMLED  53


>CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain.  
Length=151

 Score = 62.7 bits (153),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 24/65 (37%), Positives = 37/65 (57%), Gaps = 4/65 (6%)

Query  191  MGKAYVHGVDRLGRPIVVIRVQLHKPGAQSEETLNQFIIHVIESVRLLLVP-PVETAVSN  249
             GK Y+HG D+ GRP++ +R+  H P   SEE L +F++ V+E   LL+    VE     
Sbjct  1    GGKVYLHGRDKEGRPVLYLRLGRHDPKKSSEEELVRFLVLVLERALLLMPEGQVEGLT--  58

Query  250  RFLVD  254
              ++D
Sbjct  59   -VIID  62



Lambda      K        H        a         alpha
   0.319    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00031546

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461043 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain. ...  65.0    9e-15
CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain                     62.7    7e-13


>CDD:461043 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain.  This all-alpha 
domain is found to the N-terminus of pfam00650.
Length=53

 Score = 65.0 bits (159),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 29/53 (55%), Gaps = 1/53 (2%)

Query  91   IKQVQHILTQITPEEIRDGLLSTAKHDHPDALLLRFLRARKWDVTKAFVMMLD  143
              ++  +L     E  R+    T + DH D  LLRFLRARKWDV KA  M+ D
Sbjct  2    YDELLELLKDEDEETDREKFWLT-REDHDDVCLLRFLRARKWDVEKAIKMLED  53


>CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain.  
Length=151

 Score = 62.7 bits (153),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 24/65 (37%), Positives = 37/65 (57%), Gaps = 4/65 (6%)

Query  191  MGKAYVHGVDRLGRPIVVIRVQLHKPGAQSEETLNQFIIHVIESVRLLLVP-PVETAVSN  249
             GK Y+HG D+ GRP++ +R+  H P   SEE L +F++ V+E   LL+    VE     
Sbjct  1    GGKVYLHGRDKEGRPVLYLRLGRHDPKKSSEEELVRFLVLVLERALLLMPEGQVEGLT--  58

Query  250  RFLVD  254
              ++D
Sbjct  59   -VIID  62



Lambda      K        H        a         alpha
   0.319    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00031548

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain                     132     1e-38
CDD:461043 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain. ...  66.9    4e-15


>CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain.  
Length=151

 Score = 132 bits (334),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 47/110 (43%), Positives = 67/110 (61%), Gaps = 4/110 (4%)

Query  191  MGKAYVHGVDRLGRPIVVIRVQLHKPGAQSEETLNQFIIHVIESVRLLLVP-PVETAAVV  249
             GK Y+HG D+ GRP++ +R+  H P   SEE L +F++ V+E   LL+    VE   V+
Sbjct  1    GGKVYLHGRDKEGRPVLYLRLGRHDPKKSSEEELVRFLVLVLERALLLMPEGQVEGLTVI  60

Query  250  FDMTGFGLSNME---YPPVKFIIKCFEANYPESLGVLLIHNAPWVFSGPF  296
             D+ G  LSNM+      +K IIK  + NYPE LG +LI NAPW+F+  +
Sbjct  61   IDLKGLSLSNMDWWSISLLKKIIKILQDNYPERLGKILIVNAPWIFNTIW  110


>CDD:461043 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain.  This all-alpha 
domain is found to the N-terminus of pfam00650.
Length=53

 Score = 66.9 bits (164),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 29/53 (55%), Gaps = 1/53 (2%)

Query  91   IKQVQHILTQITPEEIRDGLLSTAKHDHPDALLLRFLRARKWDVTKAFVMMLD  143
              ++  +L     E  R+    T + DH D  LLRFLRARKWDV KA  M+ D
Sbjct  2    YDELLELLKDEDEETDREKFWLT-REDHDDVCLLRFLRARKWDVEKAIKMLED  53



Lambda      K        H        a         alpha
   0.320    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00031547

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461043 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain. ...  65.0    9e-15
CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain                     62.7    7e-13


>CDD:461043 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain.  This all-alpha 
domain is found to the N-terminus of pfam00650.
Length=53

 Score = 65.0 bits (159),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 29/53 (55%), Gaps = 1/53 (2%)

Query  91   IKQVQHILTQITPEEIRDGLLSTAKHDHPDALLLRFLRARKWDVTKAFVMMLD  143
              ++  +L     E  R+    T + DH D  LLRFLRARKWDV KA  M+ D
Sbjct  2    YDELLELLKDEDEETDREKFWLT-REDHDDVCLLRFLRARKWDVEKAIKMLED  53


>CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain.  
Length=151

 Score = 62.7 bits (153),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 24/65 (37%), Positives = 37/65 (57%), Gaps = 4/65 (6%)

Query  191  MGKAYVHGVDRLGRPIVVIRVQLHKPGAQSEETLNQFIIHVIESVRLLLVP-PVETAVSN  249
             GK Y+HG D+ GRP++ +R+  H P   SEE L +F++ V+E   LL+    VE     
Sbjct  1    GGKVYLHGRDKEGRPVLYLRLGRHDPKKSSEEELVRFLVLVLERALLLMPEGQVEGLT--  58

Query  250  RFLVD  254
              ++D
Sbjct  59   -VIID  62



Lambda      K        H        a         alpha
   0.319    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00031549

Length=1132


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1445106330


Query= TCONS_00031550

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  59.8    5e-13
CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) fa...  58.7    3e-12


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 59.8 bits (145),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query  62   VWAAVTSNNTAVGFIAVQDLDGMLYIAEMD--VHADWQRRGIARMMLEEVEGQARDRGYE  119
             + A   +   VGF A+  LD    +AE+   VH +++ +GI R +LE  E  A++ G +
Sbjct  5    FFVAE-DDGKIVGFAALLPLDDEGALAELRLAVHPEYRGQGIGRALLEAAEAAAKEGGIK  63

Query  120  YVSLTTYRDLEFNGRFYARMGFEE  143
             + L T         FY ++GFEE
Sbjct  64   LLELETTNR---AAAFYEKLGFEE  84


>CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.  
This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=116

 Score = 58.7 bits (142),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (4%)

Query  69   NNTAVGFIA---VQDLDGMLYIAEMDVHADWQRRGIARMMLEEVEGQARDRGYEYVSLTT  125
            +   VGF +   + D   +  I  + V  +++ +GI   +L+ +   AR+RG E + L  
Sbjct  41   DGELVGFASLSIIDDEPPVGEIEGLAVAPEYRGKGIGTALLQALLEWARERGCERIFLEV  100

Query  126  YRDLEFNGRFYARMGF  141
              D       Y ++GF
Sbjct  101  AADNLAAIALYEKLGF  116



Lambda      K        H        a         alpha
   0.322    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00031551

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) do...  59.8    5e-13
CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) fa...  58.7    3e-12


>CDD:463905 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=84

 Score = 59.8 bits (145),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query  62   VWAAVTSNNTAVGFIAVQDLDGMLYIAEMD--VHADWQRRGIARMMLEEVEGQARDRGYE  119
             + A   +   VGF A+  LD    +AE+   VH +++ +GI R +LE  E  A++ G +
Sbjct  5    FFVAE-DDGKIVGFAALLPLDDEGALAELRLAVHPEYRGQGIGRALLEAAEAAAKEGGIK  63

Query  120  YVSLTTYRDLEFNGRFYARMGFEE  143
             + L T         FY ++GFEE
Sbjct  64   LLELETTNR---AAAFYEKLGFEE  84


>CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.  
This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=116

 Score = 58.7 bits (142),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (4%)

Query  69   NNTAVGFIA---VQDLDGMLYIAEMDVHADWQRRGIARMMLEEVEGQARDRGYEYVSLTT  125
            +   VGF +   + D   +  I  + V  +++ +GI   +L+ +   AR+RG E + L  
Sbjct  41   DGELVGFASLSIIDDEPPVGEIEGLAVAPEYRGKGIGTALLQALLEWARERGCERIFLEV  100

Query  126  YRDLEFNGRFYARMGF  141
              D       Y ++GF
Sbjct  101  AADNLAAIALYEKLGF  116



Lambda      K        H        a         alpha
   0.322    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00031552

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403112 pfam11807, DUF3328, Domain of unknown function (DUF332...  146     6e-45


>CDD:403112 pfam11807, DUF3328, Domain of unknown function (DUF3328).  This 
family of proteins are functionally uncharacterized. This 
family is only found in eukaryotes.
Length=220

 Score = 146 bits (371),  Expect = 6e-45, Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 93/188 (49%), Gaps = 25/188 (13%)

Query  4    APAQDAIRYKNVVFNSGWGDQKSIYMGPPSEENNQAWDDLHVAPAMVKIPASDAAKLVNK  63
            +PA DAI Y+   FN G  D  SIY G PS E + AWDDL    A++ IP  +A KL   
Sbjct  51   SPALDAIEYEPRQFNLGDFDTPSIYRGEPSPEVDAAWDDLLNYGAIL-IPREEAPKLGKP  109

Query  64   TIPIPNASGYNSGYYLIGLDVFHQLHCLVFFLGPLVNWIRRAQDMLRKVLWGVDMHDPNE  123
               +      + G Y+ GL+VFHQLHCL               ++LRK L+    +    
Sbjct  110  PEAVVRVPDDDGGGYIAGLEVFHQLHCL---------------NLLRKYLY--PDYYYYP  152

Query  124  -------EEAMHHLDHCIEMIRQSLTCSADITVDVWAWNEQKQMVTVRADNMHTCRDFEA  176
                   EE   HLDHCI+ +RQS+ C AD+T+  + W +            H CRDF+A
Sbjct  153  NLGEGDFEEERIHLDHCIDYLRQSIMCHADVTLLTFNWVDGTDGPYPDFGTEHQCRDFDA  212

Query  177  IRQWALER  184
            +  WA ER
Sbjct  213  LLDWAKER  220



Lambda      K        H        a         alpha
   0.322    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00035591

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00035592

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00031554

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00031556

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00031557

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00031559

Length=486


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00031560

Length=352


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00031561

Length=402


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00035593

Length=333


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00035594

Length=348


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 408974800


Query= TCONS_00031562

Length=446


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00035595

Length=328


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00035597

Length=713


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00035596

Length=1522


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1930956926


Query= TCONS_00035598

Length=1592


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2025944266


Query= TCONS_00031563

Length=349


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00031570

Length=713


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00031564

Length=713


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00031565

Length=713


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00035599

Length=713


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00035600

Length=713


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00035601

Length=713


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00035603

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00035602

Length=1147


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1466049900


Query= TCONS_00035604

Length=349


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00031566

Length=713


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00031569

Length=713


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00031568

Length=713


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00031572

Length=713


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00031571

Length=1147


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1466049900


Query= TCONS_00031573

Length=1516


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0709    0.140     1.90     42.6     43.6 

Effective search space used: 1922815154


Query= TCONS_00035605

Length=511


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 635907720


Query= TCONS_00031574

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00035606

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  138     7e-39
CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase      129     8e-35


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 138 bits (349),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 122/304 (40%), Gaps = 67/304 (22%)

Query  44   VLVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKA  103
            +LVTG  GFIGSH    LL+ GY V+ +D L+++                          
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNT-----------------ARLADL  43

Query  104  TLYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNING  163
               + D  D  A+ KLL            R   VIH AA   V  SI  P  +   N+ G
Sbjct  44   RFVEGDLTDRDALEKLLA---------DVRPDAVIHLAAVGGVGASIEDPEDFIEANVLG  94

Query  164  LVDLLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEIHN  223
             ++LL    +  +  F+F+SS+ VYG  AE      E   T         G   P     
Sbjct  95   TLNLLEAARKAGVKRFLFASSSEVYGDGAEIP--QEETTLT---------GPLAP-----  138

Query  224  SQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNLVP  283
                +PY   KL GE ++   A A      V LR FN  G         D +   S ++P
Sbjct  139  ---NSPYAAAKLAGEWLVLAYAAAY-GLRAVILRLFNVYG-------PGDNEGFVSRVIP  187

Query  284  ALVE-ILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGFRT  342
            AL+  IL G+   +L++G      DGT  RDF++V DVAR    AL              
Sbjct  188  ALIRRILEGK--PILLWG------DGTQRRDFLYVDDVARAILLALE-----HGAVKGEI  234

Query  343  FNLG  346
            +N+G
Sbjct  235  YNIG  238


>CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase.  
Length=327

 Score = 129 bits (327),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 128/388 (33%), Gaps = 84/388 (22%)

Query  45   LVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKAT  104
            L+TG  G  GS+    LL+ GY V  +   S+S+     R+      H +          
Sbjct  1    LITGITGQDGSYLAELLLEKGYEVHGIVRRSSSFN--TGRLEHLYDDHLN------GNLV  52

Query  105  LYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNINGL  164
            L+  D  D+S + +LL   Q D          + + AA   V+ S   P      N+ G 
Sbjct  53   LHYGDLTDSSNLVRLLAEVQPD---------EIYNLAAQSHVDVSFEQPEYTADTNVLGT  103

Query  165  VD---LLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEI  221
            +     +  L   +   F  +S++ VYG + E      E               F+P   
Sbjct  104  LRLLEAIRSLGLEKKVRFYQASTSEVYGKVQE--VPQTETT------------PFYP---  146

Query  222  HNSQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNL  281
                  +PY   KL+ + I+ +   +   +       FN      S   GE      +  
Sbjct  147  -----RSPYAAAKLYADWIVVNYRESYGLFACNG-ILFN----HESPRRGER---FVTRK  193

Query  282  VP-ALVEILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGF  340
            +   +  I  G++ E L  G      +    RD+ H  D        L      +  D  
Sbjct  194  ITRGVARIKLGKQ-EKLYLG------NLDAKRDWGHARDYVEAMWLMLQQ---DKPDD--  241

Query  341  RTFNLGTGRGHSVLELVQTLETVSGRTIPRRVVG-------------------RRAGDIG  381
              + + TG  H+V E V+      G TI     G                    R G++ 
Sbjct  242  --YVIATGETHTVREFVEKAFLELGLTITWEGKGEIGYFKASGKVHVLIDPRYFRPGEVD  299

Query  382  SCVASAERAAAELGWTTAKSLTNACEDL  409
              +    +A  ELGW    S      ++
Sbjct  300  RLLGDPSKAKEELGWKPKVSFEELVREM  327



Lambda      K        H        a         alpha
   0.320    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00035607

Length=808


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1038978528


Query= TCONS_00031576

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00035608

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00035609

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  138     7e-39
CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase      129     8e-35


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 138 bits (349),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 122/304 (40%), Gaps = 67/304 (22%)

Query  44   VLVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKA  103
            +LVTG  GFIGSH    LL+ GY V+ +D L+++                          
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNT-----------------ARLADL  43

Query  104  TLYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNING  163
               + D  D  A+ KLL            R   VIH AA   V  SI  P  +   N+ G
Sbjct  44   RFVEGDLTDRDALEKLLA---------DVRPDAVIHLAAVGGVGASIEDPEDFIEANVLG  94

Query  164  LVDLLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEIHN  223
             ++LL    +  +  F+F+SS+ VYG  AE      E   T         G   P     
Sbjct  95   TLNLLEAARKAGVKRFLFASSSEVYGDGAEIP--QEETTLT---------GPLAP-----  138

Query  224  SQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNLVP  283
                +PY   KL GE ++   A A      V LR FN  G         D +   S ++P
Sbjct  139  ---NSPYAAAKLAGEWLVLAYAAAY-GLRAVILRLFNVYG-------PGDNEGFVSRVIP  187

Query  284  ALVE-ILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGFRT  342
            AL+  IL G+   +L++G      DGT  RDF++V DVAR    AL              
Sbjct  188  ALIRRILEGK--PILLWG------DGTQRRDFLYVDDVARAILLALE-----HGAVKGEI  234

Query  343  FNLG  346
            +N+G
Sbjct  235  YNIG  238


>CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase.  
Length=327

 Score = 129 bits (327),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 128/388 (33%), Gaps = 84/388 (22%)

Query  45   LVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKAT  104
            L+TG  G  GS+    LL+ GY V  +   S+S+     R+      H +          
Sbjct  1    LITGITGQDGSYLAELLLEKGYEVHGIVRRSSSFN--TGRLEHLYDDHLN------GNLV  52

Query  105  LYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNINGL  164
            L+  D  D+S + +LL   Q D          + + AA   V+ S   P      N+ G 
Sbjct  53   LHYGDLTDSSNLVRLLAEVQPD---------EIYNLAAQSHVDVSFEQPEYTADTNVLGT  103

Query  165  VD---LLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEI  221
            +     +  L   +   F  +S++ VYG + E      E               F+P   
Sbjct  104  LRLLEAIRSLGLEKKVRFYQASTSEVYGKVQE--VPQTETT------------PFYP---  146

Query  222  HNSQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNL  281
                  +PY   KL+ + I+ +   +   +       FN      S   GE      +  
Sbjct  147  -----RSPYAAAKLYADWIVVNYRESYGLFACNG-ILFN----HESPRRGER---FVTRK  193

Query  282  VP-ALVEILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGF  340
            +   +  I  G++ E L  G      +    RD+ H  D        L      +  D  
Sbjct  194  ITRGVARIKLGKQ-EKLYLG------NLDAKRDWGHARDYVEAMWLMLQQ---DKPDD--  241

Query  341  RTFNLGTGRGHSVLELVQTLETVSGRTIPRRVVG-------------------RRAGDIG  381
              + + TG  H+V E V+      G TI     G                    R G++ 
Sbjct  242  --YVIATGETHTVREFVEKAFLELGLTITWEGKGEIGYFKASGKVHVLIDPRYFRPGEVD  299

Query  382  SCVASAERAAAELGWTTAKSLTNACEDL  409
              +    +A  ELGW    S      ++
Sbjct  300  RLLGDPSKAKEELGWKPKVSFEELVREM  327



Lambda      K        H        a         alpha
   0.320    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00031579

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00031581

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  138     7e-39
CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase      129     8e-35


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 138 bits (349),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 122/304 (40%), Gaps = 67/304 (22%)

Query  44   VLVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKA  103
            +LVTG  GFIGSH    LL+ GY V+ +D L+++                          
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNT-----------------ARLADL  43

Query  104  TLYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNING  163
               + D  D  A+ KLL            R   VIH AA   V  SI  P  +   N+ G
Sbjct  44   RFVEGDLTDRDALEKLLA---------DVRPDAVIHLAAVGGVGASIEDPEDFIEANVLG  94

Query  164  LVDLLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEIHN  223
             ++LL    +  +  F+F+SS+ VYG  AE      E   T         G   P     
Sbjct  95   TLNLLEAARKAGVKRFLFASSSEVYGDGAEIP--QEETTLT---------GPLAP-----  138

Query  224  SQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNLVP  283
                +PY   KL GE ++   A A      V LR FN  G         D +   S ++P
Sbjct  139  ---NSPYAAAKLAGEWLVLAYAAAY-GLRAVILRLFNVYG-------PGDNEGFVSRVIP  187

Query  284  ALVE-ILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGFRT  342
            AL+  IL G+   +L++G      DGT  RDF++V DVAR    AL              
Sbjct  188  ALIRRILEGK--PILLWG------DGTQRRDFLYVDDVARAILLALE-----HGAVKGEI  234

Query  343  FNLG  346
            +N+G
Sbjct  235  YNIG  238


>CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase.  
Length=327

 Score = 129 bits (327),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 128/388 (33%), Gaps = 84/388 (22%)

Query  45   LVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKAT  104
            L+TG  G  GS+    LL+ GY V  +   S+S+     R+      H +          
Sbjct  1    LITGITGQDGSYLAELLLEKGYEVHGIVRRSSSFN--TGRLEHLYDDHLN------GNLV  52

Query  105  LYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNINGL  164
            L+  D  D+S + +LL   Q D          + + AA   V+ S   P      N+ G 
Sbjct  53   LHYGDLTDSSNLVRLLAEVQPD---------EIYNLAAQSHVDVSFEQPEYTADTNVLGT  103

Query  165  VD---LLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEI  221
            +     +  L   +   F  +S++ VYG + E      E               F+P   
Sbjct  104  LRLLEAIRSLGLEKKVRFYQASTSEVYGKVQE--VPQTETT------------PFYP---  146

Query  222  HNSQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNL  281
                  +PY   KL+ + I+ +   +   +       FN      S   GE      +  
Sbjct  147  -----RSPYAAAKLYADWIVVNYRESYGLFACNG-ILFN----HESPRRGER---FVTRK  193

Query  282  VP-ALVEILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGF  340
            +   +  I  G++ E L  G      +    RD+ H  D        L      +  D  
Sbjct  194  ITRGVARIKLGKQ-EKLYLG------NLDAKRDWGHARDYVEAMWLMLQQ---DKPDD--  241

Query  341  RTFNLGTGRGHSVLELVQTLETVSGRTIPRRVVG-------------------RRAGDIG  381
              + + TG  H+V E V+      G TI     G                    R G++ 
Sbjct  242  --YVIATGETHTVREFVEKAFLELGLTITWEGKGEIGYFKASGKVHVLIDPRYFRPGEVD  299

Query  382  SCVASAERAAAELGWTTAKSLTNACEDL  409
              +    +A  ELGW    S      ++
Sbjct  300  RLLGDPSKAKEELGWKPKVSFEELVREM  327



Lambda      K        H        a         alpha
   0.320    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00031580

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  138     7e-39
CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase      129     8e-35


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 138 bits (349),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 122/304 (40%), Gaps = 67/304 (22%)

Query  44   VLVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKA  103
            +LVTG  GFIGSH    LL+ GY V+ +D L+++                          
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNT-----------------ARLADL  43

Query  104  TLYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNING  163
               + D  D  A+ KLL            R   VIH AA   V  SI  P  +   N+ G
Sbjct  44   RFVEGDLTDRDALEKLLA---------DVRPDAVIHLAAVGGVGASIEDPEDFIEANVLG  94

Query  164  LVDLLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEIHN  223
             ++LL    +  +  F+F+SS+ VYG  AE      E   T         G   P     
Sbjct  95   TLNLLEAARKAGVKRFLFASSSEVYGDGAEIP--QEETTLT---------GPLAP-----  138

Query  224  SQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNLVP  283
                +PY   KL GE ++   A A      V LR FN  G         D +   S ++P
Sbjct  139  ---NSPYAAAKLAGEWLVLAYAAAY-GLRAVILRLFNVYG-------PGDNEGFVSRVIP  187

Query  284  ALVE-ILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGFRT  342
            AL+  IL G+   +L++G      DGT  RDF++V DVAR    AL              
Sbjct  188  ALIRRILEGK--PILLWG------DGTQRRDFLYVDDVARAILLALE-----HGAVKGEI  234

Query  343  FNLG  346
            +N+G
Sbjct  235  YNIG  238


>CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase.  
Length=327

 Score = 129 bits (327),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 128/388 (33%), Gaps = 84/388 (22%)

Query  45   LVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKAT  104
            L+TG  G  GS+    LL+ GY V  +   S+S+     R+      H +          
Sbjct  1    LITGITGQDGSYLAELLLEKGYEVHGIVRRSSSFN--TGRLEHLYDDHLN------GNLV  52

Query  105  LYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNINGL  164
            L+  D  D+S + +LL   Q D          + + AA   V+ S   P      N+ G 
Sbjct  53   LHYGDLTDSSNLVRLLAEVQPD---------EIYNLAAQSHVDVSFEQPEYTADTNVLGT  103

Query  165  VD---LLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEI  221
            +     +  L   +   F  +S++ VYG + E      E               F+P   
Sbjct  104  LRLLEAIRSLGLEKKVRFYQASTSEVYGKVQE--VPQTETT------------PFYP---  146

Query  222  HNSQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNL  281
                  +PY   KL+ + I+ +   +   +       FN      S   GE      +  
Sbjct  147  -----RSPYAAAKLYADWIVVNYRESYGLFACNG-ILFN----HESPRRGER---FVTRK  193

Query  282  VP-ALVEILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGF  340
            +   +  I  G++ E L  G      +    RD+ H  D        L      +  D  
Sbjct  194  ITRGVARIKLGKQ-EKLYLG------NLDAKRDWGHARDYVEAMWLMLQQ---DKPDD--  241

Query  341  RTFNLGTGRGHSVLELVQTLETVSGRTIPRRVVG-------------------RRAGDIG  381
              + + TG  H+V E V+      G TI     G                    R G++ 
Sbjct  242  --YVIATGETHTVREFVEKAFLELGLTITWEGKGEIGYFKASGKVHVLIDPRYFRPGEVD  299

Query  382  SCVASAERAAAELGWTTAKSLTNACEDL  409
              +    +A  ELGW    S      ++
Sbjct  300  RLLGDPSKAKEELGWKPKVSFEELVREM  327



Lambda      K        H        a         alpha
   0.320    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00031583

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  138     7e-39
CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase      129     8e-35


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 138 bits (349),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 122/304 (40%), Gaps = 67/304 (22%)

Query  44   VLVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKA  103
            +LVTG  GFIGSH    LL+ GY V+ +D L+++                          
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNT-----------------ARLADL  43

Query  104  TLYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNING  163
               + D  D  A+ KLL            R   VIH AA   V  SI  P  +   N+ G
Sbjct  44   RFVEGDLTDRDALEKLLA---------DVRPDAVIHLAAVGGVGASIEDPEDFIEANVLG  94

Query  164  LVDLLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEIHN  223
             ++LL    +  +  F+F+SS+ VYG  AE      E   T         G   P     
Sbjct  95   TLNLLEAARKAGVKRFLFASSSEVYGDGAEIP--QEETTLT---------GPLAP-----  138

Query  224  SQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNLVP  283
                +PY   KL GE ++   A A      V LR FN  G         D +   S ++P
Sbjct  139  ---NSPYAAAKLAGEWLVLAYAAAY-GLRAVILRLFNVYG-------PGDNEGFVSRVIP  187

Query  284  ALVE-ILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGFRT  342
            AL+  IL G+   +L++G      DGT  RDF++V DVAR    AL              
Sbjct  188  ALIRRILEGK--PILLWG------DGTQRRDFLYVDDVARAILLALE-----HGAVKGEI  234

Query  343  FNLG  346
            +N+G
Sbjct  235  YNIG  238


>CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase.  
Length=327

 Score = 129 bits (327),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 128/388 (33%), Gaps = 84/388 (22%)

Query  45   LVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKAT  104
            L+TG  G  GS+    LL+ GY V  +   S+S+     R+      H +          
Sbjct  1    LITGITGQDGSYLAELLLEKGYEVHGIVRRSSSFN--TGRLEHLYDDHLN------GNLV  52

Query  105  LYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNINGL  164
            L+  D  D+S + +LL   Q D          + + AA   V+ S   P      N+ G 
Sbjct  53   LHYGDLTDSSNLVRLLAEVQPD---------EIYNLAAQSHVDVSFEQPEYTADTNVLGT  103

Query  165  VD---LLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEI  221
            +     +  L   +   F  +S++ VYG + E      E               F+P   
Sbjct  104  LRLLEAIRSLGLEKKVRFYQASTSEVYGKVQE--VPQTETT------------PFYP---  146

Query  222  HNSQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNL  281
                  +PY   KL+ + I+ +   +   +       FN      S   GE      +  
Sbjct  147  -----RSPYAAAKLYADWIVVNYRESYGLFACNG-ILFN----HESPRRGER---FVTRK  193

Query  282  VP-ALVEILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGF  340
            +   +  I  G++ E L  G      +    RD+ H  D        L      +  D  
Sbjct  194  ITRGVARIKLGKQ-EKLYLG------NLDAKRDWGHARDYVEAMWLMLQQ---DKPDD--  241

Query  341  RTFNLGTGRGHSVLELVQTLETVSGRTIPRRVVG-------------------RRAGDIG  381
              + + TG  H+V E V+      G TI     G                    R G++ 
Sbjct  242  --YVIATGETHTVREFVEKAFLELGLTITWEGKGEIGYFKASGKVHVLIDPRYFRPGEVD  299

Query  382  SCVASAERAAAELGWTTAKSLTNACEDL  409
              +    +A  ELGW    S      ++
Sbjct  300  RLLGDPSKAKEELGWKPKVSFEELVREM  327



Lambda      K        H        a         alpha
   0.320    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00031582

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  138     7e-39
CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase      129     8e-35


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 138 bits (349),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 122/304 (40%), Gaps = 67/304 (22%)

Query  44   VLVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKA  103
            +LVTG  GFIGSH    LL+ GY V+ +D L+++                          
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNT-----------------ARLADL  43

Query  104  TLYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNING  163
               + D  D  A+ KLL            R   VIH AA   V  SI  P  +   N+ G
Sbjct  44   RFVEGDLTDRDALEKLLA---------DVRPDAVIHLAAVGGVGASIEDPEDFIEANVLG  94

Query  164  LVDLLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEIHN  223
             ++LL    +  +  F+F+SS+ VYG  AE      E   T         G   P     
Sbjct  95   TLNLLEAARKAGVKRFLFASSSEVYGDGAEIP--QEETTLT---------GPLAP-----  138

Query  224  SQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNLVP  283
                +PY   KL GE ++   A A      V LR FN  G         D +   S ++P
Sbjct  139  ---NSPYAAAKLAGEWLVLAYAAAY-GLRAVILRLFNVYG-------PGDNEGFVSRVIP  187

Query  284  ALVE-ILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGFRT  342
            AL+  IL G+   +L++G      DGT  RDF++V DVAR    AL              
Sbjct  188  ALIRRILEGK--PILLWG------DGTQRRDFLYVDDVARAILLALE-----HGAVKGEI  234

Query  343  FNLG  346
            +N+G
Sbjct  235  YNIG  238


>CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase.  
Length=327

 Score = 129 bits (327),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 128/388 (33%), Gaps = 84/388 (22%)

Query  45   LVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKAT  104
            L+TG  G  GS+    LL+ GY V  +   S+S+     R+      H +          
Sbjct  1    LITGITGQDGSYLAELLLEKGYEVHGIVRRSSSFN--TGRLEHLYDDHLN------GNLV  52

Query  105  LYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNINGL  164
            L+  D  D+S + +LL   Q D          + + AA   V+ S   P      N+ G 
Sbjct  53   LHYGDLTDSSNLVRLLAEVQPD---------EIYNLAAQSHVDVSFEQPEYTADTNVLGT  103

Query  165  VD---LLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEI  221
            +     +  L   +   F  +S++ VYG + E      E               F+P   
Sbjct  104  LRLLEAIRSLGLEKKVRFYQASTSEVYGKVQE--VPQTETT------------PFYP---  146

Query  222  HNSQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNL  281
                  +PY   KL+ + I+ +   +   +       FN      S   GE      +  
Sbjct  147  -----RSPYAAAKLYADWIVVNYRESYGLFACNG-ILFN----HESPRRGER---FVTRK  193

Query  282  VP-ALVEILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGF  340
            +   +  I  G++ E L  G      +    RD+ H  D        L      +  D  
Sbjct  194  ITRGVARIKLGKQ-EKLYLG------NLDAKRDWGHARDYVEAMWLMLQQ---DKPDD--  241

Query  341  RTFNLGTGRGHSVLELVQTLETVSGRTIPRRVVG-------------------RRAGDIG  381
              + + TG  H+V E V+      G TI     G                    R G++ 
Sbjct  242  --YVIATGETHTVREFVEKAFLELGLTITWEGKGEIGYFKASGKVHVLIDPRYFRPGEVD  299

Query  382  SCVASAERAAAELGWTTAKSLTNACEDL  409
              +    +A  ELGW    S      ++
Sbjct  300  RLLGDPSKAKEELGWKPKVSFEELVREM  327



Lambda      K        H        a         alpha
   0.320    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00031584

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  138     7e-39
CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase      129     8e-35


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 138 bits (349),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 122/304 (40%), Gaps = 67/304 (22%)

Query  44   VLVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKA  103
            +LVTG  GFIGSH    LL+ GY V+ +D L+++                          
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNT-----------------ARLADL  43

Query  104  TLYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNING  163
               + D  D  A+ KLL            R   VIH AA   V  SI  P  +   N+ G
Sbjct  44   RFVEGDLTDRDALEKLLA---------DVRPDAVIHLAAVGGVGASIEDPEDFIEANVLG  94

Query  164  LVDLLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEIHN  223
             ++LL    +  +  F+F+SS+ VYG  AE      E   T         G   P     
Sbjct  95   TLNLLEAARKAGVKRFLFASSSEVYGDGAEIP--QEETTLT---------GPLAP-----  138

Query  224  SQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNLVP  283
                +PY   KL GE ++   A A      V LR FN  G         D +   S ++P
Sbjct  139  ---NSPYAAAKLAGEWLVLAYAAAY-GLRAVILRLFNVYG-------PGDNEGFVSRVIP  187

Query  284  ALVE-ILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGFRT  342
            AL+  IL G+   +L++G      DGT  RDF++V DVAR    AL              
Sbjct  188  ALIRRILEGK--PILLWG------DGTQRRDFLYVDDVARAILLALE-----HGAVKGEI  234

Query  343  FNLG  346
            +N+G
Sbjct  235  YNIG  238


>CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase.  
Length=327

 Score = 129 bits (327),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 128/388 (33%), Gaps = 84/388 (22%)

Query  45   LVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKAT  104
            L+TG  G  GS+    LL+ GY V  +   S+S+     R+      H +          
Sbjct  1    LITGITGQDGSYLAELLLEKGYEVHGIVRRSSSFN--TGRLEHLYDDHLN------GNLV  52

Query  105  LYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNINGL  164
            L+  D  D+S + +LL   Q D          + + AA   V+ S   P      N+ G 
Sbjct  53   LHYGDLTDSSNLVRLLAEVQPD---------EIYNLAAQSHVDVSFEQPEYTADTNVLGT  103

Query  165  VD---LLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEI  221
            +     +  L   +   F  +S++ VYG + E      E               F+P   
Sbjct  104  LRLLEAIRSLGLEKKVRFYQASTSEVYGKVQE--VPQTETT------------PFYP---  146

Query  222  HNSQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNL  281
                  +PY   KL+ + I+ +   +   +       FN      S   GE      +  
Sbjct  147  -----RSPYAAAKLYADWIVVNYRESYGLFACNG-ILFN----HESPRRGER---FVTRK  193

Query  282  VP-ALVEILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGF  340
            +   +  I  G++ E L  G      +    RD+ H  D        L      +  D  
Sbjct  194  ITRGVARIKLGKQ-EKLYLG------NLDAKRDWGHARDYVEAMWLMLQQ---DKPDD--  241

Query  341  RTFNLGTGRGHSVLELVQTLETVSGRTIPRRVVG-------------------RRAGDIG  381
              + + TG  H+V E V+      G TI     G                    R G++ 
Sbjct  242  --YVIATGETHTVREFVEKAFLELGLTITWEGKGEIGYFKASGKVHVLIDPRYFRPGEVD  299

Query  382  SCVASAERAAAELGWTTAKSLTNACEDL  409
              +    +A  ELGW    S      ++
Sbjct  300  RLLGDPSKAKEELGWKPKVSFEELVREM  327



Lambda      K        H        a         alpha
   0.320    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00031585

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  138     7e-39
CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase      129     8e-35


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 138 bits (349),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 122/304 (40%), Gaps = 67/304 (22%)

Query  44   VLVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKA  103
            +LVTG  GFIGSH    LL+ GY V+ +D L+++                          
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNT-----------------ARLADL  43

Query  104  TLYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNING  163
               + D  D  A+ KLL            R   VIH AA   V  SI  P  +   N+ G
Sbjct  44   RFVEGDLTDRDALEKLLA---------DVRPDAVIHLAAVGGVGASIEDPEDFIEANVLG  94

Query  164  LVDLLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEIHN  223
             ++LL    +  +  F+F+SS+ VYG  AE      E   T         G   P     
Sbjct  95   TLNLLEAARKAGVKRFLFASSSEVYGDGAEIP--QEETTLT---------GPLAP-----  138

Query  224  SQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNLVP  283
                +PY   KL GE ++   A A      V LR FN  G         D +   S ++P
Sbjct  139  ---NSPYAAAKLAGEWLVLAYAAAY-GLRAVILRLFNVYG-------PGDNEGFVSRVIP  187

Query  284  ALVE-ILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGFRT  342
            AL+  IL G+   +L++G      DGT  RDF++V DVAR    AL              
Sbjct  188  ALIRRILEGK--PILLWG------DGTQRRDFLYVDDVARAILLALE-----HGAVKGEI  234

Query  343  FNLG  346
            +N+G
Sbjct  235  YNIG  238


>CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase.  
Length=327

 Score = 129 bits (327),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 128/388 (33%), Gaps = 84/388 (22%)

Query  45   LVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKAT  104
            L+TG  G  GS+    LL+ GY V  +   S+S+     R+      H +          
Sbjct  1    LITGITGQDGSYLAELLLEKGYEVHGIVRRSSSFN--TGRLEHLYDDHLN------GNLV  52

Query  105  LYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNINGL  164
            L+  D  D+S + +LL   Q D          + + AA   V+ S   P      N+ G 
Sbjct  53   LHYGDLTDSSNLVRLLAEVQPD---------EIYNLAAQSHVDVSFEQPEYTADTNVLGT  103

Query  165  VD---LLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEI  221
            +     +  L   +   F  +S++ VYG + E      E               F+P   
Sbjct  104  LRLLEAIRSLGLEKKVRFYQASTSEVYGKVQE--VPQTETT------------PFYP---  146

Query  222  HNSQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNL  281
                  +PY   KL+ + I+ +   +   +       FN      S   GE      +  
Sbjct  147  -----RSPYAAAKLYADWIVVNYRESYGLFACNG-ILFN----HESPRRGER---FVTRK  193

Query  282  VP-ALVEILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGF  340
            +   +  I  G++ E L  G      +    RD+ H  D        L      +  D  
Sbjct  194  ITRGVARIKLGKQ-EKLYLG------NLDAKRDWGHARDYVEAMWLMLQQ---DKPDD--  241

Query  341  RTFNLGTGRGHSVLELVQTLETVSGRTIPRRVVG-------------------RRAGDIG  381
              + + TG  H+V E V+      G TI     G                    R G++ 
Sbjct  242  --YVIATGETHTVREFVEKAFLELGLTITWEGKGEIGYFKASGKVHVLIDPRYFRPGEVD  299

Query  382  SCVASAERAAAELGWTTAKSLTNACEDL  409
              +    +A  ELGW    S      ++
Sbjct  300  RLLGDPSKAKEELGWKPKVSFEELVREM  327



Lambda      K        H        a         alpha
   0.320    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00031586

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  138     7e-39
CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase      129     8e-35


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 138 bits (349),  Expect = 7e-39, Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 122/304 (40%), Gaps = 67/304 (22%)

Query  44   VLVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKA  103
            +LVTG  GFIGSH    LL+ GY V+ +D L+++                          
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNT-----------------ARLADL  43

Query  104  TLYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNING  163
               + D  D  A+ KLL            R   VIH AA   V  SI  P  +   N+ G
Sbjct  44   RFVEGDLTDRDALEKLLA---------DVRPDAVIHLAAVGGVGASIEDPEDFIEANVLG  94

Query  164  LVDLLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEIHN  223
             ++LL    +  +  F+F+SS+ VYG  AE      E   T         G   P     
Sbjct  95   TLNLLEAARKAGVKRFLFASSSEVYGDGAEIP--QEETTLT---------GPLAP-----  138

Query  224  SQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNLVP  283
                +PY   KL GE ++   A A      V LR FN  G         D +   S ++P
Sbjct  139  ---NSPYAAAKLAGEWLVLAYAAAY-GLRAVILRLFNVYG-------PGDNEGFVSRVIP  187

Query  284  ALVE-ILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGFRT  342
            AL+  IL G+   +L++G      DGT  RDF++V DVAR    AL              
Sbjct  188  ALIRRILEGK--PILLWG------DGTQRRDFLYVDDVARAILLALE-----HGAVKGEI  234

Query  343  FNLG  346
            +N+G
Sbjct  235  YNIG  238


>CDD:465104 pfam16363, GDP_Man_Dehyd, GDP-mannose 4,6 dehydratase.  
Length=327

 Score = 129 bits (327),  Expect = 8e-35, Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 128/388 (33%), Gaps = 84/388 (22%)

Query  45   LVTGGLGFIGSHTCLELLKAGYNVLIVDDLSNSYRHVFSRILLAAKLHCDRTDGHCPKAT  104
            L+TG  G  GS+    LL+ GY V  +   S+S+     R+      H +          
Sbjct  1    LITGITGQDGSYLAELLLEKGYEVHGIVRRSSSFN--TGRLEHLYDDHLN------GNLV  52

Query  105  LYDVDYRDTSAMRKLLDAYQRDPSTRQSRIIGVIHFAAFKQVEESIHTPLKYYRNNINGL  164
            L+  D  D+S + +LL   Q D          + + AA   V+ S   P      N+ G 
Sbjct  53   LHYGDLTDSSNLVRLLAEVQPD---------EIYNLAAQSHVDVSFEQPEYTADTNVLGT  103

Query  165  VD---LLVLLDQYRITTFIFSSSANVYGTLAEHRPLLHEDACTHQPDPGQRFGAFHPAEI  221
            +     +  L   +   F  +S++ VYG + E      E               F+P   
Sbjct  104  LRLLEAIRSLGLEKKVRFYQASTSEVYGKVQE--VPQTETT------------PFYP---  146

Query  222  HNSQITNPYGRTKLFGEAILADLARANPAWTIVALRYFNPIGCDASGLLGEDPKVHPSNL  281
                  +PY   KL+ + I+ +   +   +       FN      S   GE      +  
Sbjct  147  -----RSPYAAAKLYADWIVVNYRESYGLFACNG-ILFN----HESPRRGER---FVTRK  193

Query  282  VP-ALVEILTGRRTELLIYGSDWETPDGTPVRDFIHVTDVARGHTAALAAARDGRVRDGF  340
            +   +  I  G++ E L  G      +    RD+ H  D        L      +  D  
Sbjct  194  ITRGVARIKLGKQ-EKLYLG------NLDAKRDWGHARDYVEAMWLMLQQ---DKPDD--  241

Query  341  RTFNLGTGRGHSVLELVQTLETVSGRTIPRRVVG-------------------RRAGDIG  381
              + + TG  H+V E V+      G TI     G                    R G++ 
Sbjct  242  --YVIATGETHTVREFVEKAFLELGLTITWEGKGEIGYFKASGKVHVLIDPRYFRPGEVD  299

Query  382  SCVASAERAAAELGWTTAKSLTNACEDL  409
              +    +A  ELGW    S      ++
Sbjct  300  RLLGDPSKAKEELGWKPKVSFEELVREM  327



Lambda      K        H        a         alpha
   0.320    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00031587

Length=220


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00031590

Length=110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395860 pfam01083, Cutinase, Cutinase                              142     2e-45


>CDD:395860 pfam01083, Cutinase, Cutinase.  
Length=173

 Score = 142 bits (361),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 50/107 (47%), Positives = 62/107 (58%), Gaps = 2/107 (2%)

Query  3    LFKQAASKCPDTQIVAGGYSQGTAVMDGSIKRLPEEVKERIKGVVLFGYTRNAQERGQIA  62
            L   A SKCPDT+IV GGYSQG  VMD +I  LP  V +++  VVLFG   N Q    I+
Sbjct  68   LINSANSKCPDTKIVLGGYSQGAQVMDNAICGLPAAVADKVAAVVLFGDPSNGQGLPGIS  127

Query  63   NFPKDKVKIYCAMGDLVCDGTLIVTAAHFTYGAN-TGDAARFLLGKL  108
              P  K   YC  GD +C GT     AH +YG++ T  AA F++ KL
Sbjct  128  PLPASKTISYCDAGDPIC-GTGNNLPAHLSYGSDYTTQAAAFVVSKL  173



Lambda      K        H        a         alpha
   0.320    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00031589

Length=251


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00031588

Length=267


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00031591

Length=855
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:112781 pfam03982, DAGAT, Diacylglycerol acyltransferase. The ...  199     3e-58


>CDD:112781 pfam03982, DAGAT, Diacylglycerol acyltransferase.  The terminal 
step of triacylglycerol (TAG) formation is catalyzed by the 
enzyme diacylglycerol acyltransferase (DAGAT).
Length=297

 Score = 199 bits (508),  Expect = 3e-58, Method: Composition-based stats.
 Identities = 113/304 (37%), Positives = 168/304 (55%), Gaps = 14/304 (5%)

Query  556  SLLLVPRLRLFVLLYILYVKYLAKAHKTGTLSLRNDRLRTSWIWKAYASYFPLRLYRSVP  615
             +L        ++LY L++ Y   + K G    R++  R   IWK +A+YFP++L+++  
Sbjct  1    FVLFFTPQWSLLVLYALWLFYDWNSPKRG--GYRSNWARNWRIWKWFANYFPVKLHKTAE  58

Query  616  LSPRKKYIFGYHPHGIALRGALGTLAADAAAFSDLFPGVTNTLLMKDEAFYQPIYREYLL  675
            L P + Y+FGYHPHGI   GA    + +A  F D FPG+   +      FY P  RE LL
Sbjct  59   LPPNRNYLFGYHPHGILSVGAFSNFSTNATGFMDKFPGIRPNICTLAGQFYTPFRREILL  118

Query  676  STGVSGVSHSSCIRHLTRAGHDGQGMGRAITITVGGSREYNIARPGTMCVVVRIRKGFVR  735
            S G+  VS  S I ++     D  G GRA+ + VGG+ E   A PG   + ++ RKGFVR
Sbjct  119  SLGLIEVSRES-IEYVL----DKCGKGRAVVLVVGGAAEALEAHPGKHTLTLKNRKGFVR  173

Query  736  VAVETGADLVPVIAFGENELFDCVNVSSSTVLGVVARVWEWAVGHKVAFSTGR--FNIFC  793
            +A++TGADLVPV +FGEN+++        + L  V    + A+G       GR  FN + 
Sbjct  174  IALKTGADLVPVYSFGENDVYKQWENPEGSRLRWVQEKLKRAIGFSPPIFHGRGVFNSYT  233

Query  794  ----PYRRPVNVVVGEPIPVTQQRWDPDQAYIDQLHGQYIKALEKLWDDWRDTFGVDRSV  849
                P+R+P+  VVG PI VT+   +P Q  ID+LHGQY++AL +L+++ +  FGV    
Sbjct  234  FGLLPFRKPITTVVGAPIEVTKTL-NPTQEQIDELHGQYMEALRELFEEHKTKFGVPPDT  292

Query  850  RFEV  853
               +
Sbjct  293  DLVL  296



Lambda      K        H        a         alpha
   0.322    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1090990640


Query= TCONS_00031592

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00031593

Length=445


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00031594

Length=445


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00035611

Length=489


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00031595

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00031596

Length=514


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00031597

Length=314


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00035612

Length=314


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00031598

Length=314


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00031599

Length=314


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00031600

Length=314


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00035613

Length=405


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00031601

Length=327


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00035615

Length=327


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00035614

Length=285


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00031604

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00031606

Length=381


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00031605

Length=423


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00031607

Length=339


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00035616

Length=353


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00031608

Length=413


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 503282808


Query= TCONS_00031609

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00031610

Length=317


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00031620

Length=354


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00031613

Length=462


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 570537888


Query= TCONS_00031612

Length=354


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00031611

Length=317


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00031622

Length=462


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 570537888


Query= TCONS_00035617

Length=354


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00031618

Length=317


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00031614

Length=317


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00031617

Length=354


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00031616

Length=317


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00031615

Length=462


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 570537888


Query= TCONS_00035618

Length=499


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 617738928


Query= TCONS_00031619

Length=317


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00035619

Length=301


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00031621

Length=446


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 545998624


Query= TCONS_00035620

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00031623

Length=317


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 366302140


Query= TCONS_00031625

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00031624

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00031626

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00031627

Length=1608


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2047655658


Query= TCONS_00031628

Length=376


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453018240


Query= TCONS_00031629

Length=450


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00031630

Length=450


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00031631

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00031632

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00031633

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00031634

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00031635

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00031636

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00031637

Length=619


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 787563556


Query= TCONS_00031645

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease. This f...  162     3e-48


>CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease.  This family 
of proteins are related to pfam00665 and are probably endonucleases 
of the DDE superfamily. Transposase proteins are necessary 
for efficient DNA transposition. This domain is a member 
of the DDE superfamily, which contain three carboxylate 
residues that are believed to be responsible for coordinating 
metal ions needed for catalysis. The catalytic activity of 
this enzyme involves DNA cleavage at a specific site followed 
by a strand transfer reaction. Interestingly this family 
also includes the CENP-B protein. This domain in that protein 
appears to have lost the metal binding residues and is unlikely 
to have endonuclease activity. Centromere Protein B (CENP-B) 
is a DNA-binding protein localized to the centromere.
Length=177

 Score = 162 bits (412),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 72/179 (40%), Gaps = 9/179 (5%)

Query  208  NKEWVTVIESVNSAGWVLPPCIIFKGKTHIQAWYEDSALPCNWRIEKSPNGWTTDEIGIS  267
             +    ++    +    LPP +I KGK       E +  P     + +   W T  I   
Sbjct  1    KERLTVMLCCNAAGSEKLPPLVIGKGKNPRAFKNEKTPKPLPVEYKSNGKAWMTTSIFEE  60

Query  268  WLQNHFIPHTNARTKGKHRLLVLDGHGSHLTPQFDRICAQNNIIPICMPPHSSYLLQPLD  327
            WLQ  F P        K  LL+LDG GSH T +  R C   NI  + +P +S+ +LQPLD
Sbjct  61   WLQKWFDPRMRESPGRK-VLLLLDGSGSHPTVELIRSCGLQNIFLVFLPANSTSILQPLD  119

Query  328  VSCFAVLKRAYGRLMESNMQLGINHIDK-------LDFLEAYPKAHTEAFKSENIKNGF  379
                +  K  Y R     +  G N +         LD L+   KA   A     I +GF
Sbjct  120  QGVVSTFKANYRRQWLQYLLAGNNLLSPPWKKLTLLDALKWIAKAW-NAVSPSTITSGF  177



Lambda      K        H        a         alpha
   0.318    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00031643

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease. This f...  162     3e-48


>CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease.  This family 
of proteins are related to pfam00665 and are probably endonucleases 
of the DDE superfamily. Transposase proteins are necessary 
for efficient DNA transposition. This domain is a member 
of the DDE superfamily, which contain three carboxylate 
residues that are believed to be responsible for coordinating 
metal ions needed for catalysis. The catalytic activity of 
this enzyme involves DNA cleavage at a specific site followed 
by a strand transfer reaction. Interestingly this family 
also includes the CENP-B protein. This domain in that protein 
appears to have lost the metal binding residues and is unlikely 
to have endonuclease activity. Centromere Protein B (CENP-B) 
is a DNA-binding protein localized to the centromere.
Length=177

 Score = 162 bits (412),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 72/179 (40%), Gaps = 9/179 (5%)

Query  208  NKEWVTVIESVNSAGWVLPPCIIFKGKTHIQAWYEDSALPCNWRIEKSPNGWTTDEIGIS  267
             +    ++    +    LPP +I KGK       E +  P     + +   W T  I   
Sbjct  1    KERLTVMLCCNAAGSEKLPPLVIGKGKNPRAFKNEKTPKPLPVEYKSNGKAWMTTSIFEE  60

Query  268  WLQNHFIPHTNARTKGKHRLLVLDGHGSHLTPQFDRICAQNNIIPICMPPHSSYLLQPLD  327
            WLQ  F P        K  LL+LDG GSH T +  R C   NI  + +P +S+ +LQPLD
Sbjct  61   WLQKWFDPRMRESPGRK-VLLLLDGSGSHPTVELIRSCGLQNIFLVFLPANSTSILQPLD  119

Query  328  VSCFAVLKRAYGRLMESNMQLGINHIDK-------LDFLEAYPKAHTEAFKSENIKNGF  379
                +  K  Y R     +  G N +         LD L+   KA   A     I +GF
Sbjct  120  QGVVSTFKANYRRQWLQYLLAGNNLLSPPWKKLTLLDALKWIAKAW-NAVSPSTITSGF  177



Lambda      K        H        a         alpha
   0.318    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00031642

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease. This f...  162     3e-48


>CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease.  This family 
of proteins are related to pfam00665 and are probably endonucleases 
of the DDE superfamily. Transposase proteins are necessary 
for efficient DNA transposition. This domain is a member 
of the DDE superfamily, which contain three carboxylate 
residues that are believed to be responsible for coordinating 
metal ions needed for catalysis. The catalytic activity of 
this enzyme involves DNA cleavage at a specific site followed 
by a strand transfer reaction. Interestingly this family 
also includes the CENP-B protein. This domain in that protein 
appears to have lost the metal binding residues and is unlikely 
to have endonuclease activity. Centromere Protein B (CENP-B) 
is a DNA-binding protein localized to the centromere.
Length=177

 Score = 162 bits (412),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 72/179 (40%), Gaps = 9/179 (5%)

Query  208  NKEWVTVIESVNSAGWVLPPCIIFKGKTHIQAWYEDSALPCNWRIEKSPNGWTTDEIGIS  267
             +    ++    +    LPP +I KGK       E +  P     + +   W T  I   
Sbjct  1    KERLTVMLCCNAAGSEKLPPLVIGKGKNPRAFKNEKTPKPLPVEYKSNGKAWMTTSIFEE  60

Query  268  WLQNHFIPHTNARTKGKHRLLVLDGHGSHLTPQFDRICAQNNIIPICMPPHSSYLLQPLD  327
            WLQ  F P        K  LL+LDG GSH T +  R C   NI  + +P +S+ +LQPLD
Sbjct  61   WLQKWFDPRMRESPGRK-VLLLLDGSGSHPTVELIRSCGLQNIFLVFLPANSTSILQPLD  119

Query  328  VSCFAVLKRAYGRLMESNMQLGINHIDK-------LDFLEAYPKAHTEAFKSENIKNGF  379
                +  K  Y R     +  G N +         LD L+   KA   A     I +GF
Sbjct  120  QGVVSTFKANYRRQWLQYLLAGNNLLSPPWKKLTLLDALKWIAKAW-NAVSPSTITSGF  177



Lambda      K        H        a         alpha
   0.318    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00035622

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease. This f...  162     3e-48


>CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease.  This family 
of proteins are related to pfam00665 and are probably endonucleases 
of the DDE superfamily. Transposase proteins are necessary 
for efficient DNA transposition. This domain is a member 
of the DDE superfamily, which contain three carboxylate 
residues that are believed to be responsible for coordinating 
metal ions needed for catalysis. The catalytic activity of 
this enzyme involves DNA cleavage at a specific site followed 
by a strand transfer reaction. Interestingly this family 
also includes the CENP-B protein. This domain in that protein 
appears to have lost the metal binding residues and is unlikely 
to have endonuclease activity. Centromere Protein B (CENP-B) 
is a DNA-binding protein localized to the centromere.
Length=177

 Score = 162 bits (412),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 72/179 (40%), Gaps = 9/179 (5%)

Query  208  NKEWVTVIESVNSAGWVLPPCIIFKGKTHIQAWYEDSALPCNWRIEKSPNGWTTDEIGIS  267
             +    ++    +    LPP +I KGK       E +  P     + +   W T  I   
Sbjct  1    KERLTVMLCCNAAGSEKLPPLVIGKGKNPRAFKNEKTPKPLPVEYKSNGKAWMTTSIFEE  60

Query  268  WLQNHFIPHTNARTKGKHRLLVLDGHGSHLTPQFDRICAQNNIIPICMPPHSSYLLQPLD  327
            WLQ  F P        K  LL+LDG GSH T +  R C   NI  + +P +S+ +LQPLD
Sbjct  61   WLQKWFDPRMRESPGRK-VLLLLDGSGSHPTVELIRSCGLQNIFLVFLPANSTSILQPLD  119

Query  328  VSCFAVLKRAYGRLMESNMQLGINHIDK-------LDFLEAYPKAHTEAFKSENIKNGF  379
                +  K  Y R     +  G N +         LD L+   KA   A     I +GF
Sbjct  120  QGVVSTFKANYRRQWLQYLLAGNNLLSPPWKKLTLLDALKWIAKAW-NAVSPSTITSGF  177



Lambda      K        H        a         alpha
   0.318    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00035623

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease. This f...  162     3e-48


>CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease.  This family 
of proteins are related to pfam00665 and are probably endonucleases 
of the DDE superfamily. Transposase proteins are necessary 
for efficient DNA transposition. This domain is a member 
of the DDE superfamily, which contain three carboxylate 
residues that are believed to be responsible for coordinating 
metal ions needed for catalysis. The catalytic activity of 
this enzyme involves DNA cleavage at a specific site followed 
by a strand transfer reaction. Interestingly this family 
also includes the CENP-B protein. This domain in that protein 
appears to have lost the metal binding residues and is unlikely 
to have endonuclease activity. Centromere Protein B (CENP-B) 
is a DNA-binding protein localized to the centromere.
Length=177

 Score = 162 bits (412),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 72/179 (40%), Gaps = 9/179 (5%)

Query  208  NKEWVTVIESVNSAGWVLPPCIIFKGKTHIQAWYEDSALPCNWRIEKSPNGWTTDEIGIS  267
             +    ++    +    LPP +I KGK       E +  P     + +   W T  I   
Sbjct  1    KERLTVMLCCNAAGSEKLPPLVIGKGKNPRAFKNEKTPKPLPVEYKSNGKAWMTTSIFEE  60

Query  268  WLQNHFIPHTNARTKGKHRLLVLDGHGSHLTPQFDRICAQNNIIPICMPPHSSYLLQPLD  327
            WLQ  F P        K  LL+LDG GSH T +  R C   NI  + +P +S+ +LQPLD
Sbjct  61   WLQKWFDPRMRESPGRK-VLLLLDGSGSHPTVELIRSCGLQNIFLVFLPANSTSILQPLD  119

Query  328  VSCFAVLKRAYGRLMESNMQLGINHIDK-------LDFLEAYPKAHTEAFKSENIKNGF  379
                +  K  Y R     +  G N +         LD L+   KA   A     I +GF
Sbjct  120  QGVVSTFKANYRRQWLQYLLAGNNLLSPPWKKLTLLDALKWIAKAW-NAVSPSTITSGF  177



Lambda      K        H        a         alpha
   0.318    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00031639

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease. This f...  162     3e-48


>CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease.  This family 
of proteins are related to pfam00665 and are probably endonucleases 
of the DDE superfamily. Transposase proteins are necessary 
for efficient DNA transposition. This domain is a member 
of the DDE superfamily, which contain three carboxylate 
residues that are believed to be responsible for coordinating 
metal ions needed for catalysis. The catalytic activity of 
this enzyme involves DNA cleavage at a specific site followed 
by a strand transfer reaction. Interestingly this family 
also includes the CENP-B protein. This domain in that protein 
appears to have lost the metal binding residues and is unlikely 
to have endonuclease activity. Centromere Protein B (CENP-B) 
is a DNA-binding protein localized to the centromere.
Length=177

 Score = 162 bits (412),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 72/179 (40%), Gaps = 9/179 (5%)

Query  208  NKEWVTVIESVNSAGWVLPPCIIFKGKTHIQAWYEDSALPCNWRIEKSPNGWTTDEIGIS  267
             +    ++    +    LPP +I KGK       E +  P     + +   W T  I   
Sbjct  1    KERLTVMLCCNAAGSEKLPPLVIGKGKNPRAFKNEKTPKPLPVEYKSNGKAWMTTSIFEE  60

Query  268  WLQNHFIPHTNARTKGKHRLLVLDGHGSHLTPQFDRICAQNNIIPICMPPHSSYLLQPLD  327
            WLQ  F P        K  LL+LDG GSH T +  R C   NI  + +P +S+ +LQPLD
Sbjct  61   WLQKWFDPRMRESPGRK-VLLLLDGSGSHPTVELIRSCGLQNIFLVFLPANSTSILQPLD  119

Query  328  VSCFAVLKRAYGRLMESNMQLGINHIDK-------LDFLEAYPKAHTEAFKSENIKNGF  379
                +  K  Y R     +  G N +         LD L+   KA   A     I +GF
Sbjct  120  QGVVSTFKANYRRQWLQYLLAGNNLLSPPWKKLTLLDALKWIAKAW-NAVSPSTITSGF  177



Lambda      K        H        a         alpha
   0.318    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00031640

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease. This f...  162     3e-48


>CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease.  This family 
of proteins are related to pfam00665 and are probably endonucleases 
of the DDE superfamily. Transposase proteins are necessary 
for efficient DNA transposition. This domain is a member 
of the DDE superfamily, which contain three carboxylate 
residues that are believed to be responsible for coordinating 
metal ions needed for catalysis. The catalytic activity of 
this enzyme involves DNA cleavage at a specific site followed 
by a strand transfer reaction. Interestingly this family 
also includes the CENP-B protein. This domain in that protein 
appears to have lost the metal binding residues and is unlikely 
to have endonuclease activity. Centromere Protein B (CENP-B) 
is a DNA-binding protein localized to the centromere.
Length=177

 Score = 162 bits (412),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 72/179 (40%), Gaps = 9/179 (5%)

Query  208  NKEWVTVIESVNSAGWVLPPCIIFKGKTHIQAWYEDSALPCNWRIEKSPNGWTTDEIGIS  267
             +    ++    +    LPP +I KGK       E +  P     + +   W T  I   
Sbjct  1    KERLTVMLCCNAAGSEKLPPLVIGKGKNPRAFKNEKTPKPLPVEYKSNGKAWMTTSIFEE  60

Query  268  WLQNHFIPHTNARTKGKHRLLVLDGHGSHLTPQFDRICAQNNIIPICMPPHSSYLLQPLD  327
            WLQ  F P        K  LL+LDG GSH T +  R C   NI  + +P +S+ +LQPLD
Sbjct  61   WLQKWFDPRMRESPGRK-VLLLLDGSGSHPTVELIRSCGLQNIFLVFLPANSTSILQPLD  119

Query  328  VSCFAVLKRAYGRLMESNMQLGINHIDK-------LDFLEAYPKAHTEAFKSENIKNGF  379
                +  K  Y R     +  G N +         LD L+   KA   A     I +GF
Sbjct  120  QGVVSTFKANYRRQWLQYLLAGNNLLSPPWKKLTLLDALKWIAKAW-NAVSPSTITSGF  177



Lambda      K        H        a         alpha
   0.318    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00031646

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease. This f...  162     3e-48


>CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease.  This family 
of proteins are related to pfam00665 and are probably endonucleases 
of the DDE superfamily. Transposase proteins are necessary 
for efficient DNA transposition. This domain is a member 
of the DDE superfamily, which contain three carboxylate 
residues that are believed to be responsible for coordinating 
metal ions needed for catalysis. The catalytic activity of 
this enzyme involves DNA cleavage at a specific site followed 
by a strand transfer reaction. Interestingly this family 
also includes the CENP-B protein. This domain in that protein 
appears to have lost the metal binding residues and is unlikely 
to have endonuclease activity. Centromere Protein B (CENP-B) 
is a DNA-binding protein localized to the centromere.
Length=177

 Score = 162 bits (412),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 72/179 (40%), Gaps = 9/179 (5%)

Query  208  NKEWVTVIESVNSAGWVLPPCIIFKGKTHIQAWYEDSALPCNWRIEKSPNGWTTDEIGIS  267
             +    ++    +    LPP +I KGK       E +  P     + +   W T  I   
Sbjct  1    KERLTVMLCCNAAGSEKLPPLVIGKGKNPRAFKNEKTPKPLPVEYKSNGKAWMTTSIFEE  60

Query  268  WLQNHFIPHTNARTKGKHRLLVLDGHGSHLTPQFDRICAQNNIIPICMPPHSSYLLQPLD  327
            WLQ  F P        K  LL+LDG GSH T +  R C   NI  + +P +S+ +LQPLD
Sbjct  61   WLQKWFDPRMRESPGRK-VLLLLDGSGSHPTVELIRSCGLQNIFLVFLPANSTSILQPLD  119

Query  328  VSCFAVLKRAYGRLMESNMQLGINHIDK-------LDFLEAYPKAHTEAFKSENIKNGF  379
                +  K  Y R     +  G N +         LD L+   KA   A     I +GF
Sbjct  120  QGVVSTFKANYRRQWLQYLLAGNNLLSPPWKKLTLLDALKWIAKAW-NAVSPSTITSGF  177



Lambda      K        H        a         alpha
   0.318    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0736    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00031641

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease. This f...  162     3e-48


>CDD:367380 pfam03184, DDE_1, DDE superfamily endonuclease.  This family 
of proteins are related to pfam00665 and are probably endonucleases 
of the DDE superfamily. Transposase proteins are necessary 
for efficient DNA transposition. This domain is a member 
of the DDE superfamily, which contain three carboxylate 
residues that are believed to be responsible for coordinating 
metal ions needed for catalysis. The catalytic activity of 
this enzyme involves DNA cleavage at a specific site followed 
by a strand transfer reaction. Interestingly this family 
also includes the CENP-B protein. This domain in that protein 
appears to have lost the metal binding residues and is unlikely 
to have endonuclease activity. Centromere Protein B (CENP-B) 
is a DNA-binding protein localized to the centromere.
Length=177

 Score = 162 bits (412),  Expect = 3e-48, Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 72/179 (40%), Gaps = 9/179 (5%)

Query  208  NKEWVTVIESVNSAGWVLPPCIIFKGKTHIQAWYEDSALPCNWRIEKSPNGWTTDEIGIS  267
             +    ++    +    LPP +I KGK       E +  P     + +   W T  I   
Sbjct  1    KERLTVMLCCNAAGSEKLPPLVIGKGKNPRAFKNEKTPKPLPVEYKSNGKAWMTTSIFEE  60

Query  268  WLQNHFIPHTNARTKGKHRLLVLDGHGSHLTPQFDRICAQNNIIPICMPPHSSYLLQPLD  327
            WLQ  F P        K  LL+LDG GSH T +  R C   NI  + +P +S+ +LQPLD
Sbjct  61   WLQKWFDPRMRESPGRK-VLLLLDGSGSHPTVELIRSCGLQNIFLVFLPANSTSILQPLD  119

Query  328  VSCFAVLKRAYGRLMESNMQLGINHIDK-------LDFLEAYPKAHTEAFKSENIKNGF  379
                +  K  Y R     +  G N +         LD L+   KA   A     I +GF
Sbjct  120  QGVVSTFKANYRRQWLQYLLAGNNLLSPPWKKLTLLDALKWIAKAW-NAVSPSTITSGF  177



Lambda      K        H        a         alpha
   0.318    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 610168598


Query= TCONS_00031644

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF34...  235     1e-75


>CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF3435).  This 
family of proteins are functionally uncharacterized. This 
protein is found in eukaryotes. Proteins in this family are 
typically between 435 to 791 amino acids in length. This family 
is related to pfam00589 suggesting it may be an integrase 
enzyme.
Length=418

 Score = 235 bits (601),  Expect = 1e-75, Method: Composition-based stats.
 Identities = 92/196 (47%), Positives = 121/196 (62%), Gaps = 9/196 (5%)

Query  1    MKHASSTTFLNHYRPRR-HVFMQEHMLGLPPDKEFERAVTSISRWIDKWRPRYLNDMEKA  59
            ++HASS TFL HY PRR    +Q  +LGLPP +   RA   +SR  D  RPR L D +KA
Sbjct  223  LQHASSRTFLRHYLPRRVDRDVQAVVLGLPPQEALIRAACRMSRTRDPRRPRDLTDEQKA  282

Query  60   SVERDPELQAAIQRREDLADE----YEHSQDPTLIPL---LRERQQDVTNTRRRLQYKRR  112
            SVERDPELQ  I++R  L  E    Y         PL     +RQ++V N R+RL+ K +
Sbjct  283  SVERDPELQELIRKRRHLKAEIQALYGQVAKARGTPLYERYEKRQREVRNERQRLRRKLK  342

Query  113  KEVRQEFSRKQAVIDIERQLSGSAVHDEDDREFSQAEYEMPPAQIRLVEKLLVVPTSWSL  172
            K++R+EF  +Q VIDIERQLSG A+ DE+ +E    E  +PP +IRL  KLL  PTS +L
Sbjct  343  KKIREEFDEEQPVIDIERQLSGLAL-DEEVKEDLPDEQLVPPERIRLASKLLTWPTSETL  401

Query  173  EAEWQRRHEAVEAIKE  188
            E E +RR  A++A+  
Sbjct  402  EDELERRIAAIDAVVA  417



Lambda      K        H        a         alpha
   0.318    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00035625

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF34...  353     1e-120


>CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF3435).  This 
family of proteins are functionally uncharacterized. This 
protein is found in eukaryotes. Proteins in this family are 
typically between 435 to 791 amino acids in length. This family 
is related to pfam00589 suggesting it may be an integrase 
enzyme.
Length=418

 Score = 353 bits (909),  Expect = 1e-120, Method: Composition-based stats.
 Identities = 135/279 (48%), Positives = 176/279 (63%), Gaps = 10/279 (4%)

Query  1    MPLPLKREMDDYYVFCKVEVVKGQVRILRDQPMSAGTLNAQLRSFSEIHGSLNALLSHQF  60
            +PLPLK EM D  VFC+VE   G VRI  D+ ++  TLN+ L+   EI G  N +  +Q 
Sbjct  141  LPLPLKPEMLDIPVFCRVERTAGGVRISPDEALTYDTLNSWLKRLGEIAGFENPITPYQL  200

Query  61   RYGSGKMLDE-RWVSDAQRNLIMKHASSTTFLNHYRPRR-HVFMQEHMLGLPPDKEFERA  118
            RYG+GK L+E   VS+AQRNLI++HASS TFL HY PRR    +Q  +LGLPP +   RA
Sbjct  201  RYGAGKALNESGEVSEAQRNLILQHASSRTFLRHYLPRRVDRDVQAVVLGLPPQEALIRA  260

Query  119  VTSISRWIDKWRPRYLNDMEKASVERDPELQAAIQRREDLADE----YEHSQDPTLIPL-  173
               +SR  D  RPR L D +KASVERDPELQ  I++R  L  E    Y         PL 
Sbjct  261  ACRMSRTRDPRRPRDLTDEQKASVERDPELQELIRKRRHLKAEIQALYGQVAKARGTPLY  320

Query  174  --LRERQQDVTNTRRRLQYKRRKEVRQEFSRKQAVIDIERQLSGSAVHDEDDREFSQAEY  231
                +RQ++V N R+RL+ K +K++R+EF  +Q VIDIERQLSG A+ DE+ +E    E 
Sbjct  321  ERYEKRQREVRNERQRLRRKLKKKIREEFDEEQPVIDIERQLSGLAL-DEEVKEDLPDEQ  379

Query  232  EMPPAQIRLVEKLLVVPTSWSLEAEWQRRHEAVEAIKEY  270
             +PP +IRL  KLL  PTS +LE E +RR  A++A+  Y
Sbjct  380  LVPPERIRLASKLLTWPTSETLEDELERRIAAIDAVVAY  418



Lambda      K        H        a         alpha
   0.320    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00035624

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF34...  204     2e-63


>CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF3435).  This 
family of proteins are functionally uncharacterized. This 
protein is found in eukaryotes. Proteins in this family are 
typically between 435 to 791 amino acids in length. This family 
is related to pfam00589 suggesting it may be an integrase 
enzyme.
Length=418

 Score = 204 bits (522),  Expect = 2e-63, Method: Composition-based stats.
 Identities = 67/131 (51%), Positives = 85/131 (65%), Gaps = 4/131 (3%)

Query  188  IEDMVPFNETILQTREKRFHLGFQRILLCFYVMMGLFTVSRKGAMLHLQYKHLVVTLQKN  247
            IED+     T+L T EKRF  G QR+ LC + ++  FT +R GA+L+L+Y+ L +TL K+
Sbjct  1    IEDLATLLRTLLTTTEKRFQTGRQRVQLCLFNLLAGFTSNRPGALLNLRYRDLELTLIKD  60

Query  248  PHGGPPVPMVDFRAEFIKGFLGMKELYWNSNTFSLPEIIYGVSLVFSPRVFLFAMLFHAN  307
            P GG PV +V+F  EF KGFLG K+     NTF LPEIIY  SLV  P VFL  +LF   
Sbjct  61   PDGGRPVLLVEFTPEFTKGFLGKKKP----NTFGLPEIIYDPSLVLCPHVFLLGLLFRDG  116

Query  308  AFEAPSLTSME  318
            AF  PS+TS E
Sbjct  117  AFSNPSITSPE  127



Lambda      K        H        a         alpha
   0.323    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00031647

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF34...  348     1e-119


>CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF3435).  This 
family of proteins are functionally uncharacterized. This 
protein is found in eukaryotes. Proteins in this family are 
typically between 435 to 791 amino acids in length. This family 
is related to pfam00589 suggesting it may be an integrase 
enzyme.
Length=418

 Score = 348 bits (896),  Expect = 1e-119, Method: Composition-based stats.
 Identities = 135/279 (48%), Positives = 176/279 (63%), Gaps = 10/279 (4%)

Query  1    MPLPLKREMDDYYVFCKVEVVKGQVRILRDQPMSAGTLNAQLRSFSEIHGSLNALLSHQF  60
            +PLPLK EM D  VFC+VE   G VRI  D+ ++  TLN+ L+   EI G  N +  +Q 
Sbjct  141  LPLPLKPEMLDIPVFCRVERTAGGVRISPDEALTYDTLNSWLKRLGEIAGFENPITPYQL  200

Query  61   RYGSGKMLDE-RWVSDAQRNLIMKHASSTTFLNHYRPRR-HVFMQEHMLGLPPDKEFERA  118
            RYG+GK L+E   VS+AQRNLI++HASS TFL HY PRR    +Q  +LGLPP +   RA
Sbjct  201  RYGAGKALNESGEVSEAQRNLILQHASSRTFLRHYLPRRVDRDVQAVVLGLPPQEALIRA  260

Query  119  VTSISRWIDKWRPRYLNDMEKASVERDPELQAAIQRREDLADE----YEHSQDPTLIPL-  173
               +SR  D  RPR L D +KASVERDPELQ  I++R  L  E    Y         PL 
Sbjct  261  ACRMSRTRDPRRPRDLTDEQKASVERDPELQELIRKRRHLKAEIQALYGQVAKARGTPLY  320

Query  174  --LRERQQDVTNTRRRLQYKRRKEVRQEFSRKQAVIDIERQLSGSAVHDEDDREFSQAEY  231
                +RQ++V N R+RL+ K +K++R+EF  +Q VIDIERQLSG A+ DE+ +E    E 
Sbjct  321  ERYEKRQREVRNERQRLRRKLKKKIREEFDEEQPVIDIERQLSGLAL-DEEVKEDLPDEQ  379

Query  232  EMPPAQIRLVEKLLVVPTSWSLEAEWQRRHEAVEAIKEY  270
             +PP +IRL  KLL  PTS +LE E +RR  A++A+  Y
Sbjct  380  LVPPERIRLASKLLTWPTSETLEDELERRIAAIDAVVAY  418



Lambda      K        H        a         alpha
   0.319    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 363116904


Query= TCONS_00031649

Length=314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF34...  209     2e-65


>CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF3435).  This 
family of proteins are functionally uncharacterized. This 
protein is found in eukaryotes. Proteins in this family are 
typically between 435 to 791 amino acids in length. This family 
is related to pfam00589 suggesting it may be an integrase 
enzyme.
Length=418

 Score = 209 bits (535),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 67/127 (53%), Positives = 85/127 (67%), Gaps = 0/127 (0%)

Query  188  IEDMVPFNETILQTREKRFHLGFQRILLCFYVMMGLFTVSRKGAMLHLQYKHLVVTLQKN  247
            IED+     T+L T EKRF  G QR+ LC + ++  FT +R GA+L+L+Y+ L +TL K+
Sbjct  1    IEDLATLLRTLLTTTEKRFQTGRQRVQLCLFNLLAGFTSNRPGALLNLRYRDLELTLIKD  60

Query  248  PHGGPPVPMVDFRAEFIKGFLGMKELNTFSLPEIIYGVSLVFSPRVFLFAMLFHANAFEA  307
            P GG PV +V+F  EF KGFLG K+ NTF LPEIIY  SLV  P VFL  +LF   AF  
Sbjct  61   PDGGRPVLLVEFTPEFTKGFLGKKKPNTFGLPEIIYDPSLVLCPHVFLLGLLFRDGAFSN  120

Query  308  PSLTSME  314
            PS+TS E
Sbjct  121  PSITSPE  127



Lambda      K        H        a         alpha
   0.323    0.139    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00035626

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF34...  139     4e-39


>CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF3435).  This 
family of proteins are functionally uncharacterized. This 
protein is found in eukaryotes. Proteins in this family are 
typically between 435 to 791 amino acids in length. This family 
is related to pfam00589 suggesting it may be an integrase 
enzyme.
Length=418

 Score = 139 bits (353),  Expect = 4e-39, Method: Composition-based stats.
 Identities = 42/86 (49%), Positives = 58/86 (67%), Gaps = 0/86 (0%)

Query  188  IEDMVPFNETILQTREKRFHLGFQRILLCFYVMMGLFTVSRKGAMLHLQYKHLVVTLQKN  247
            IED+     T+L T EKRF  G QR+ LC + ++  FT +R GA+L+L+Y+ L +TL K+
Sbjct  1    IEDLATLLRTLLTTTEKRFQTGRQRVQLCLFNLLAGFTSNRPGALLNLRYRDLELTLIKD  60

Query  248  PHGGPPVPMVDFRAEFIKGFLGMKEL  273
            P GG PV +V+F  EF KGFLG K+ 
Sbjct  61   PDGGRPVLLVEFTPEFTKGFLGKKKP  86



Lambda      K        H        a         alpha
   0.322    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 312777664


Query= TCONS_00031650

Length=684
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF34...  520     0.0  


>CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF3435).  This 
family of proteins are functionally uncharacterized. This 
protein is found in eukaryotes. Proteins in this family are 
typically between 435 to 791 amino acids in length. This family 
is related to pfam00589 suggesting it may be an integrase 
enzyme.
Length=418

 Score = 520 bits (1341),  Expect = 0.0, Method: Composition-based stats.
 Identities = 191/422 (45%), Positives = 249/422 (59%), Gaps = 40/422 (9%)

Query  188  IEDMVPFNETILQTREKRFHLGFQRILLCFYVMMGLFTVSRKGAMLHLQYKHLVVTLQKN  247
            IED+     T+L T EKRF  G QR+ LC + ++  FT +R GA+L+L+Y+ L +TL K+
Sbjct  1    IEDLATLLRTLLTTTEKRFQTGRQRVQLCLFNLLAGFTSNRPGALLNLRYRDLELTLIKD  60

Query  248  PHGGPPVPMVDFRAEFIKGFLGMKELYWNSNTFSLPEIIYGVSLVFSPRVFLFAMLFHAN  307
            P GG PV +V+F  EF KGFLG K+     NTF LPEIIY  SLV  P VFL  +LF   
Sbjct  61   PDGGRPVLLVEFTPEFTKGFLGKKKP----NTFGLPEIIYDPSLVLCPHVFLLGLLFRDG  116

Query  308  AFEA--------------------------PKMDDYYVFCKVEVVKGQVRILRDQPMSAG  341
            AF                            P+M D  VFC+VE   G VRI  D+ ++  
Sbjct  117  AFSNPSITSPEDLYRLKVPKGRQQLPLPLKPEMLDIPVFCRVERTAGGVRISPDEALTYD  176

Query  342  TLNAQLRSFSEIHGSLNALLSHQFRYGSGKMLDE-RWVSDAQRNLIMKHASSTTFLNHYR  400
            TLN+ L+   EI G  N +  +Q RYG+GK L+E   VS+AQRNLI++HASS TFL HY 
Sbjct  177  TLNSWLKRLGEIAGFENPITPYQLRYGAGKALNESGEVSEAQRNLILQHASSRTFLRHYL  236

Query  401  PRR-HVFMQEHMLGLPPDKEFERAVTSISRWIDKWRPRYLNDMEKASVERDPELQAAIQR  459
            PRR    +Q  +LGLPP +   RA   +SR  D  RPR L D +KASVERDPELQ  I++
Sbjct  237  PRRVDRDVQAVVLGLPPQEALIRAACRMSRTRDPRRPRDLTDEQKASVERDPELQELIRK  296

Query  460  REDLADE----YEHSQDPTLIPL---LRERQQDVTNTRRRLQYKRRKEVRQEFSRKQAVI  512
            R  L  E    Y         PL     +RQ++V N R+RL+ K +K++R+EF  +Q VI
Sbjct  297  RRHLKAEIQALYGQVAKARGTPLYERYEKRQREVRNERQRLRRKLKKKIREEFDEEQPVI  356

Query  513  DIERQLSGSAVHDEDDREFSQAEYEMPPAQIRLVEKLLVVPTSWSLEAEWQRRHEAVEAI  572
            DIERQLSG A+ DE+ +E    E  +PP +IRL  KLL  PTS +LE E +RR  A++A+
Sbjct  357  DIERQLSGLAL-DEEVKEDLPDEQLVPPERIRLASKLLTWPTSETLEDELERRIAAIDAV  415

Query  573  KE  574
              
Sbjct  416  VA  417



Lambda      K        H        a         alpha
   0.321    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 871600890


Query= TCONS_00035627

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF34...  238     1e-76


>CDD:371796 pfam11917, DUF3435, Protein of unknown function (DUF3435).  This 
family of proteins are functionally uncharacterized. This 
protein is found in eukaryotes. Proteins in this family are 
typically between 435 to 791 amino acids in length. This family 
is related to pfam00589 suggesting it may be an integrase 
enzyme.
Length=418

 Score = 238 bits (609),  Expect = 1e-76, Method: Composition-based stats.
 Identities = 93/197 (47%), Positives = 122/197 (62%), Gaps = 9/197 (5%)

Query  1    MKHASSTTFLNHYRPRR-HVFMQEHMLGLPPDKEFERAVTSISRWIDKWRPRYLNDMEKA  59
            ++HASS TFL HY PRR    +Q  +LGLPP +   RA   +SR  D  RPR L D +KA
Sbjct  223  LQHASSRTFLRHYLPRRVDRDVQAVVLGLPPQEALIRAACRMSRTRDPRRPRDLTDEQKA  282

Query  60   SVERDPELQAAIQRREDLADE----YEHSQDPTLIPL---LRERQQDVTNTRRRLQYKRR  112
            SVERDPELQ  I++R  L  E    Y         PL     +RQ++V N R+RL+ K +
Sbjct  283  SVERDPELQELIRKRRHLKAEIQALYGQVAKARGTPLYERYEKRQREVRNERQRLRRKLK  342

Query  113  KEVRQEFSRKQAVIDIERQLSGSAVHDEDDREFSQAEYEMPPAQIRLVEKLLVVPTSWSL  172
            K++R+EF  +Q VIDIERQLSG A+ DE+ +E    E  +PP +IRL  KLL  PTS +L
Sbjct  343  KKIREEFDEEQPVIDIERQLSGLAL-DEEVKEDLPDEQLVPPERIRLASKLLTWPTSETL  401

Query  173  EAEWQRRHEAVEAIKEY  189
            E E +RR  A++A+  Y
Sbjct  402  EDELERRIAAIDAVVAY  418



Lambda      K        H        a         alpha
   0.319    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00035628

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00031651

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00031652

Length=256


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00035629

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00035630

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00035631

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.144    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00031653

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-ter...  280     2e-92
CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossman...  159     3e-47


>CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-terminal domain. 
 
Length=246

 Score = 280 bits (717),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 108/246 (44%), Positives = 146/246 (59%), Gaps = 3/246 (1%)

Query  232  AFPNAMVDRITPQTSETDKTALAEKFGIVDSWPVVTEPFTQWVIEDQFSDGRPPFEKVGV  291
             FPN MVDRI P T++ +   +A+  G+ D  PV  EPF QWVIED F  GRP  EKVGV
Sbjct  4    GFPNTMVDRIVPATTDDELAKIAQALGVEDPLPVTVEPFRQWVIEDNFVKGRPLLEKVGV  63

Query  292  QVVKDVHAVEQFEKHKLRLLNGSHSALGYPGQLAGFQYVHEVMANPLFRKFVWQMMQEEV  351
            + V+DV     +E+ KLR+LNG H+ L Y G LAG+Q +HE M +P  R FV  +M EEV
Sbjct  64   EYVEDVDP---YEERKLRILNGGHATLAYLGYLAGYQTIHEAMLDPEIRAFVKGVMTEEV  120

Query  352  KPLLPEIPGVDIDEYCNTLIERFTNPTIMDQLPRICLNASGKIPQFIMPSIAEAIWETGP  411
             PLL ++PG D++ Y + +IERF+NP I D + R+  + S K+PQ  +PS+   I     
Sbjct  121  APLLAKVPGDDLEAYADKIIERFSNPYIKDTVWRVARDGSQKLPQRKLPSLRRHIRAGPL  180

Query  412  FRRLCFVAAAWFHYIKGVDDRGKPFEVVDPMREELQAKARAGGNDPSELLSIKSLFGDDL  471
               L    A W  Y++GVD+ G   +  DP  +ELQA A      P+ +L+  S  GDDL
Sbjct  181  PELLALGVAGWMRYLQGVDEGGNYIDPEDPQAQELQAAAIIAKERPAAVLAEVSGLGDDL  240

Query  472  RNDERF  477
              +  F
Sbjct  241  AQNSEF  246


>CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossmann domain. 
 
Length=151

 Score = 159 bits (403),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 94/167 (56%), Gaps = 16/167 (10%)

Query  35   EGIVHIGVGGFHRAHLAVYIDQLMQKHGVNDYAICGVGLQPFDSAMRDALASQDHLYTLI  94
              IVH G G FHRAH A +I  L+ ++G  D+ I  V L+  D+  R+AL +QD LYT+I
Sbjct  1    MRIVHFGAGNFHRAHQA-FIGDLLAENG-FDWGIVDVNLRVVDA--REALNAQDGLYTVI  56

Query  95   ERSAKGSFAHVIGSINSYLFAPDNREAVIAKMAHPDTKIVSLTITESGYYYNENTHELQS  154
            E   +G  A ++GS+N+     ++ EA+I  MA P   IVS T+TE G    + T +L +
Sbjct  57   EDGEEGRQARLVGSVNAVNSVEEDLEALIELMAEPQADIVSTTVTEGGI---DATGQLDN  113

Query  155  EHPDIQFDLDPANEKAPRTTFGFLYAGLTRRYQQGLKPFTVMSCDNM  201
            + PDI  DL             +L   L RR   GLKP T+++CDNM
Sbjct  114  DLPDIAADLA---------KPEYLVEALKRRRAAGLKPLTIIACDNM  151



Lambda      K        H        a         alpha
   0.320    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00035632

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-ter...  280     2e-92
CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossman...  159     3e-47


>CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-terminal domain. 
 
Length=246

 Score = 280 bits (717),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 108/246 (44%), Positives = 146/246 (59%), Gaps = 3/246 (1%)

Query  232  AFPNAMVDRITPQTSETDKTALAEKFGIVDSWPVVTEPFTQWVIEDQFSDGRPPFEKVGV  291
             FPN MVDRI P T++ +   +A+  G+ D  PV  EPF QWVIED F  GRP  EKVGV
Sbjct  4    GFPNTMVDRIVPATTDDELAKIAQALGVEDPLPVTVEPFRQWVIEDNFVKGRPLLEKVGV  63

Query  292  QVVKDVHAVEQFEKHKLRLLNGSHSALGYPGQLAGFQYVHEVMANPLFRKFVWQMMQEEV  351
            + V+DV     +E+ KLR+LNG H+ L Y G LAG+Q +HE M +P  R FV  +M EEV
Sbjct  64   EYVEDVDP---YEERKLRILNGGHATLAYLGYLAGYQTIHEAMLDPEIRAFVKGVMTEEV  120

Query  352  KPLLPEIPGVDIDEYCNTLIERFTNPTIMDQLPRICLNASGKIPQFIMPSIAEAIWETGP  411
             PLL ++PG D++ Y + +IERF+NP I D + R+  + S K+PQ  +PS+   I     
Sbjct  121  APLLAKVPGDDLEAYADKIIERFSNPYIKDTVWRVARDGSQKLPQRKLPSLRRHIRAGPL  180

Query  412  FRRLCFVAAAWFHYIKGVDDRGKPFEVVDPMREELQAKARAGGNDPSELLSIKSLFGDDL  471
               L    A W  Y++GVD+ G   +  DP  +ELQA A      P+ +L+  S  GDDL
Sbjct  181  PELLALGVAGWMRYLQGVDEGGNYIDPEDPQAQELQAAAIIAKERPAAVLAEVSGLGDDL  240

Query  472  RNDERF  477
              +  F
Sbjct  241  AQNSEF  246


>CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossmann domain. 
 
Length=151

 Score = 159 bits (403),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 94/167 (56%), Gaps = 16/167 (10%)

Query  35   EGIVHIGVGGFHRAHLAVYIDQLMQKHGVNDYAICGVGLQPFDSAMRDALASQDHLYTLI  94
              IVH G G FHRAH A +I  L+ ++G  D+ I  V L+  D+  R+AL +QD LYT+I
Sbjct  1    MRIVHFGAGNFHRAHQA-FIGDLLAENG-FDWGIVDVNLRVVDA--REALNAQDGLYTVI  56

Query  95   ERSAKGSFAHVIGSINSYLFAPDNREAVIAKMAHPDTKIVSLTITESGYYYNENTHELQS  154
            E   +G  A ++GS+N+     ++ EA+I  MA P   IVS T+TE G    + T +L +
Sbjct  57   EDGEEGRQARLVGSVNAVNSVEEDLEALIELMAEPQADIVSTTVTEGGI---DATGQLDN  113

Query  155  EHPDIQFDLDPANEKAPRTTFGFLYAGLTRRYQQGLKPFTVMSCDNM  201
            + PDI  DL             +L   L RR   GLKP T+++CDNM
Sbjct  114  DLPDIAADLA---------KPEYLVEALKRRRAAGLKPLTIIACDNM  151



Lambda      K        H        a         alpha
   0.320    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00031654

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-ter...  280     2e-92
CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossman...  158     4e-47


>CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-terminal domain. 
 
Length=246

 Score = 280 bits (717),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 108/246 (44%), Positives = 146/246 (59%), Gaps = 3/246 (1%)

Query  226  AFPNAMVDRITPQTSETDKTALAEKFGIVDSWPVVTEPFTQWVIEDQFSDGRPPFEKVGV  285
             FPN MVDRI P T++ +   +A+  G+ D  PV  EPF QWVIED F  GRP  EKVGV
Sbjct  4    GFPNTMVDRIVPATTDDELAKIAQALGVEDPLPVTVEPFRQWVIEDNFVKGRPLLEKVGV  63

Query  286  QVVKDVHAVEQFEKHKLRLLNGSHSALGYPGQLAGFQYVHEVMANPLFRKFVWQMMQEEV  345
            + V+DV     +E+ KLR+LNG H+ L Y G LAG+Q +HE M +P  R FV  +M EEV
Sbjct  64   EYVEDVDP---YEERKLRILNGGHATLAYLGYLAGYQTIHEAMLDPEIRAFVKGVMTEEV  120

Query  346  KPLLPEIPGVDIDEYCNTLIERFTNPTIMDQLPRICLNASGKIPQFIMPSIAEAIWETGP  405
             PLL ++PG D++ Y + +IERF+NP I D + R+  + S K+PQ  +PS+   I     
Sbjct  121  APLLAKVPGDDLEAYADKIIERFSNPYIKDTVWRVARDGSQKLPQRKLPSLRRHIRAGPL  180

Query  406  FRRLCFVAAAWFHYIKGVDDRGKPFEVVDPMREELQAKARAGGNDPSELLSIKSLFGDDL  465
               L    A W  Y++GVD+ G   +  DP  +ELQA A      P+ +L+  S  GDDL
Sbjct  181  PELLALGVAGWMRYLQGVDEGGNYIDPEDPQAQELQAAAIIAKERPAAVLAEVSGLGDDL  240

Query  466  RNDERF  471
              +  F
Sbjct  241  AQNSEF  246


>CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossmann domain. 
 
Length=151

 Score = 158 bits (402),  Expect = 4e-47, Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 94/167 (56%), Gaps = 16/167 (10%)

Query  29   EGIVHIGVGGFHRAHLAVYIDQLMQKHGVNDYAICGVGLQPFDSAMRDALASQDHLYTLI  88
              IVH G G FHRAH A +I  L+ ++G  D+ I  V L+  D+  R+AL +QD LYT+I
Sbjct  1    MRIVHFGAGNFHRAHQA-FIGDLLAENG-FDWGIVDVNLRVVDA--REALNAQDGLYTVI  56

Query  89   ERSAKGSFAHVIGSINSYLFAPDNREAVIAKMAHPDTKIVSLTITESGYYYNENTHELQS  148
            E   +G  A ++GS+N+     ++ EA+I  MA P   IVS T+TE G    + T +L +
Sbjct  57   EDGEEGRQARLVGSVNAVNSVEEDLEALIELMAEPQADIVSTTVTEGGI---DATGQLDN  113

Query  149  EHPDIQFDLDPANEKAPRTTFGFLYAGLTRRYQQGLKPFTVMSCDNM  195
            + PDI  DL             +L   L RR   GLKP T+++CDNM
Sbjct  114  DLPDIAADLA---------KPEYLVEALKRRRAAGLKPLTIIACDNM  151



Lambda      K        H        a         alpha
   0.321    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 613196730


Query= TCONS_00035633

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-ter...  280     2e-92
CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossman...  159     3e-47


>CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-terminal domain. 
 
Length=246

 Score = 280 bits (717),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 108/246 (44%), Positives = 146/246 (59%), Gaps = 3/246 (1%)

Query  232  AFPNAMVDRITPQTSETDKTALAEKFGIVDSWPVVTEPFTQWVIEDQFSDGRPPFEKVGV  291
             FPN MVDRI P T++ +   +A+  G+ D  PV  EPF QWVIED F  GRP  EKVGV
Sbjct  4    GFPNTMVDRIVPATTDDELAKIAQALGVEDPLPVTVEPFRQWVIEDNFVKGRPLLEKVGV  63

Query  292  QVVKDVHAVEQFEKHKLRLLNGSHSALGYPGQLAGFQYVHEVMANPLFRKFVWQMMQEEV  351
            + V+DV     +E+ KLR+LNG H+ L Y G LAG+Q +HE M +P  R FV  +M EEV
Sbjct  64   EYVEDVDP---YEERKLRILNGGHATLAYLGYLAGYQTIHEAMLDPEIRAFVKGVMTEEV  120

Query  352  KPLLPEIPGVDIDEYCNTLIERFTNPTIMDQLPRICLNASGKIPQFIMPSIAEAIWETGP  411
             PLL ++PG D++ Y + +IERF+NP I D + R+  + S K+PQ  +PS+   I     
Sbjct  121  APLLAKVPGDDLEAYADKIIERFSNPYIKDTVWRVARDGSQKLPQRKLPSLRRHIRAGPL  180

Query  412  FRRLCFVAAAWFHYIKGVDDRGKPFEVVDPMREELQAKARAGGNDPSELLSIKSLFGDDL  471
               L    A W  Y++GVD+ G   +  DP  +ELQA A      P+ +L+  S  GDDL
Sbjct  181  PELLALGVAGWMRYLQGVDEGGNYIDPEDPQAQELQAAAIIAKERPAAVLAEVSGLGDDL  240

Query  472  RNDERF  477
              +  F
Sbjct  241  AQNSEF  246


>CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossmann domain. 
 
Length=151

 Score = 159 bits (403),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 94/167 (56%), Gaps = 16/167 (10%)

Query  35   EGIVHIGVGGFHRAHLAVYIDQLMQKHGVNDYAICGVGLQPFDSAMRDALASQDHLYTLI  94
              IVH G G FHRAH A +I  L+ ++G  D+ I  V L+  D+  R+AL +QD LYT+I
Sbjct  1    MRIVHFGAGNFHRAHQA-FIGDLLAENG-FDWGIVDVNLRVVDA--REALNAQDGLYTVI  56

Query  95   ERSAKGSFAHVIGSINSYLFAPDNREAVIAKMAHPDTKIVSLTITESGYYYNENTHELQS  154
            E   +G  A ++GS+N+     ++ EA+I  MA P   IVS T+TE G    + T +L +
Sbjct  57   EDGEEGRQARLVGSVNAVNSVEEDLEALIELMAEPQADIVSTTVTEGGI---DATGQLDN  113

Query  155  EHPDIQFDLDPANEKAPRTTFGFLYAGLTRRYQQGLKPFTVMSCDNM  201
            + PDI  DL             +L   L RR   GLKP T+++CDNM
Sbjct  114  DLPDIAADLA---------KPEYLVEALKRRRAAGLKPLTIIACDNM  151



Lambda      K        H        a         alpha
   0.320    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 622281126


Query= TCONS_00031655

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-ter...  280     2e-92
CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossman...  159     3e-47


>CDD:369700 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-terminal domain. 
 
Length=246

 Score = 280 bits (717),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 108/246 (44%), Positives = 146/246 (59%), Gaps = 3/246 (1%)

Query  225  AFPNAMVDRITPQTSETDKTALAEKFGIVDSWPVVTEPFTQWVIEDQFSDGRPPFEKVGV  284
             FPN MVDRI P T++ +   +A+  G+ D  PV  EPF QWVIED F  GRP  EKVGV
Sbjct  4    GFPNTMVDRIVPATTDDELAKIAQALGVEDPLPVTVEPFRQWVIEDNFVKGRPLLEKVGV  63

Query  285  QVVKDVHAVEQFEKHKLRLLNGSHSALGYPGQLAGFQYVHEVMANPLFRKFVWQMMQEEV  344
            + V+DV     +E+ KLR+LNG H+ L Y G LAG+Q +HE M +P  R FV  +M EEV
Sbjct  64   EYVEDVDP---YEERKLRILNGGHATLAYLGYLAGYQTIHEAMLDPEIRAFVKGVMTEEV  120

Query  345  KPLLPEIPGVDIDEYCNTLIERFTNPTIMDQLPRICLNASGKIPQFIMPSIAEAIWETGP  404
             PLL ++PG D++ Y + +IERF+NP I D + R+  + S K+PQ  +PS+   I     
Sbjct  121  APLLAKVPGDDLEAYADKIIERFSNPYIKDTVWRVARDGSQKLPQRKLPSLRRHIRAGPL  180

Query  405  FRRLCFVAAAWFHYIKGVDDRGKPFEVVDPMREELQAKARAGGNDPSELLSIKSLFGDDL  464
               L    A W  Y++GVD+ G   +  DP  +ELQA A      P+ +L+  S  GDDL
Sbjct  181  PELLALGVAGWMRYLQGVDEGGNYIDPEDPQAQELQAAAIIAKERPAAVLAEVSGLGDDL  240

Query  465  RNDERF  470
              +  F
Sbjct  241  AQNSEF  246


>CDD:395986 pfam01232, Mannitol_dh, Mannitol dehydrogenase Rossmann domain. 
 
Length=151

 Score = 159 bits (403),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 94/167 (56%), Gaps = 16/167 (10%)

Query  28   EGIVHIGVGGFHRAHLAVYIDQLMQKHGVNDYAICGVGLQPFDSAMRDALASQDHLYTLI  87
              IVH G G FHRAH A +I  L+ ++G  D+ I  V L+  D+  R+AL +QD LYT+I
Sbjct  1    MRIVHFGAGNFHRAHQA-FIGDLLAENG-FDWGIVDVNLRVVDA--REALNAQDGLYTVI  56

Query  88   ERSAKGSFAHVIGSINSYLFAPDNREAVIAKMAHPDTKIVSLTITESGYYYNENTHELQS  147
            E   +G  A ++GS+N+     ++ EA+I  MA P   IVS T+TE G    + T +L +
Sbjct  57   EDGEEGRQARLVGSVNAVNSVEEDLEALIELMAEPQADIVSTTVTEGGI---DATGQLDN  113

Query  148  EHPDIQFDLDPANEKAPRTTFGFLYAGLTRRYQQGLKPFTVMSCDNM  194
            + PDI  DL             +L   L RR   GLKP T+++CDNM
Sbjct  114  DLPDIAADLA---------KPEYLVEALKRRRAAGLKPLTIIACDNM  151



Lambda      K        H        a         alpha
   0.321    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 611682664


Query= TCONS_00035634

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain. ...  74.6    1e-17
CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain. ...  62.2    4e-13


>CDD:462406 pfam08241, Methyltransf_11, Methyltransferase domain.  Members 
of this family are SAM dependent methyltransferases.
Length=94

 Score = 74.6 bits (184),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 41/96 (43%), Gaps = 6/96 (6%)

Query  63   DVGAGIGPYAGELRSQFPHVIVSDIVPKNVQLAEAHLGRDGFRYRAAPVEVADDLP--PG  120
            DVG G G     L      V   DI P+ ++LA     R+G  +     E   DLP    
Sbjct  2    DVGCGTGLLTELLARLGARVTGVDISPEMLELAREKAPREGLTFVVGDAE---DLPFPDN  58

Query  121  SVDLAFATNV-MHFADQHAAMQAIATQLRPGGTFAC  155
            S DL  ++ V  H  D   A++ IA  L+PGG    
Sbjct  59   SFDLVLSSEVLHHVEDPERALREIARVLKPGGILII  94


>CDD:463945 pfam13649, Methyltransf_25, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=96

 Score = 62.2 bits (152),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 27/97 (28%), Positives = 39/97 (40%), Gaps = 11/97 (11%)

Query  63   DVGAGIGPYAGELRSQFP-HVIVSDIVPKNVQLAEAHLGRDGFRYRAAPVEVAD----DL  117
            D+G G G     L  +    V   D+ P+ ++ A       G           D      
Sbjct  3    DLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAEAGLNVE---FVQGDAEDLPF  59

Query  118  PPGSVDLAFATNVMHF---ADQHAAMQAIATQLRPGG  151
            P GS DL  ++ V+H     D  AA++ IA  L+PGG
Sbjct  60   PDGSFDLVVSSGVLHHLPDPDLEAALREIARVLKPGG  96



Lambda      K        H        a         alpha
   0.321    0.139    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00031656

Length=121
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429298 pfam07110, EthD, EthD domain. This family consists of ...  85.6    1e-23


>CDD:429298 pfam07110, EthD, EthD domain.  This family consists of several 
bacterial sequences which are related to the EthD protein 
of Rhodococcus ruber. In Rhodococcus ruber, EthD is thought 
to be involved in the degradation of ethyl tert-butyl ether 
(ETBE). EthD synthesis is induced by ETBE but it's exact function 
is unknown, it is however thought to be essential to the 
ETBE degradation system.
Length=96

 Score = 85.6 bits (212),  Expect = 1e-23, Method: Composition-based stats.
 Identities = 32/97 (33%), Positives = 49/97 (51%), Gaps = 2/97 (2%)

Query  21   KPGMSEEDYRRYMTEVSAPMTKDLMVKYGVKRWTMVHNTTATRALMAELCDSQMTNVVDF  80
            KPG+S E++R Y  EV AP+ K L+ K+G+ R+           + A L  +      D+
Sbjct  1    KPGLSPEEFRDYWEEVHAPLAKPLLGKHGILRYHPQT--KRRPGVEAGLALAGPGGDPDY  58

Query  81   DCFSQVVFESLEDYKRMKQDPWYKEHLFHDHENFADT  117
            D  +++ F+ LED+     DP Y   +  D  NFAD 
Sbjct  59   DGVAELWFDDLEDFVAAFADPEYAAVIGPDEANFADP  95



Lambda      K        H        a         alpha
   0.321    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00031658

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429298 pfam07110, EthD, EthD domain. This family consists of ...  86.0    2e-23


>CDD:429298 pfam07110, EthD, EthD domain.  This family consists of several 
bacterial sequences which are related to the EthD protein 
of Rhodococcus ruber. In Rhodococcus ruber, EthD is thought 
to be involved in the degradation of ethyl tert-butyl ether 
(ETBE). EthD synthesis is induced by ETBE but it's exact function 
is unknown, it is however thought to be essential to the 
ETBE degradation system.
Length=96

 Score = 86.0 bits (213),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 32/97 (33%), Positives = 49/97 (51%), Gaps = 2/97 (2%)

Query  21   KPGMSEEDYRRYMTEVSAPMTKDLMVKYGVKRWTMVHNTTATRALMAELCDSQMTNVVDF  80
            KPG+S E++R Y  EV AP+ K L+ K+G+ R+           + A L  +      D+
Sbjct  1    KPGLSPEEFRDYWEEVHAPLAKPLLGKHGILRYHPQT--KRRPGVEAGLALAGPGGDPDY  58

Query  81   DCFSQVVFESLEDYKRMKQDPWYKEHLFHDHENFADT  117
            D  +++ F+ LED+     DP Y   +  D  NFAD 
Sbjct  59   DGVAELWFDDLEDFVAAFADPEYAAVIGPDEANFADP  95



Lambda      K        H        a         alpha
   0.321    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00031659

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase. This ent...  153     5e-45
CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  122     2e-33
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  110     6e-29


>CDD:462247 pfam07732, Cu-oxidase_3, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=119

 Score = 153 bits (390),  Expect = 5e-45, Method: Composition-based stats.
 Identities = 56/125 (45%), Positives = 72/125 (58%), Gaps = 8/125 (6%)

Query  65   TVSQQVIAPDGYEK-LGMVANGQFPGPTIEADWGDTIRISVYNNFTDNNNGSAIHWHGLR  123
            TV+   ++P G  +   +  NGQFPGPTI    GDT+ ++V NN       ++IHWHGL+
Sbjct  1    TVTYGTVSPLGGTRQAVIGVNGQFPGPTIRVREGDTVVVNVTNNLD---EPTSIHWHGLQ  57

Query  124  QFENNVQDGVPGVTQCPSKPGETQVYEFRATQ-YGTSWYHSHFSLQCECPLNGLFGPIVI  182
            Q      DGVPGVTQCP  PG++  Y F+  Q  GT WYHSH S Q      GL G I+I
Sbjct  58   QRGTPWMDGVPGVTQCPIPPGQSFTYRFQVKQQAGTYWYHSHTSGQ---QAAGLAGAIII  114

Query  183  HGPSS  187
               +S
Sbjct  115  EDRAS  119


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 122 bits (308),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 47/124 (38%), Positives = 63/124 (51%), Gaps = 16/124 (13%)

Query  446  DFPPETVPILLDFDTGDWVHFVITNNYTFEKVHFPRNLTPVMHPMHLHGHDFAILAQGRG  505
             FPP T  I L +  G  V +V+ N             T  +HP HLHGH F +L +G G
Sbjct  28   LFPPNTNVITLPY--GTVVEWVLQNT------------TTGVHPFHLHGHSFQVLGRGGG  73

Query  506  EFDP--SIVPKLDNPPRRDVVNVDTGSYVWIAFQVNNPGAWLLHCHIAFHVSSGLSLQFI  563
             +         L +P RRD V V  G +V I F+ +NPG WL HCHI +H+  G+  QF+
Sbjct  74   PWPEEDPKTYNLVDPVRRDTVQVPPGGWVAIRFRADNPGVWLFHCHILWHLDQGMMGQFV  133

Query  564  EQPK  567
             +P 
Sbjct  134  VRPG  137


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 110 bits (277),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 42/164 (26%), Positives = 63/164 (38%), Gaps = 24/164 (15%)

Query  193  DLGPWLLHDWYHDDVFSLLWVGETKNRGA-----IPESTILNGKGKFDCNHHNDTRCTGT  247
            +     L DWYH D   L        +       +P++ ++NGK                
Sbjct  1    EDYVITLSDWYHKDAKDLEKELLASGKAPTDFPPVPDAVLINGKD---------------  45

Query  248  GGEYFEVNFRKGVRYKFTIANTGTLLEYMFWIDGHNLTVIAADFVPIEPYVTDVVNVAMG  307
            G     +    G  Y+  I N        F I+GH +TV+  D V + P+  D +++  G
Sbjct  46   GASLATLTVTPGKTYRLRIINVALDDSLNFSIEGHKMTVVEVDGVYVNPFTVDSLDIFPG  105

Query  308  QRYEIIVEANADFTHGSNFWIYAQYCDEVDLLPHKAVGIVRYDE  351
            QRY ++V AN D     N+WI A            A  I+RY  
Sbjct  106  QRYSVLVTANQD---PGNYWIVASPNIPAFDNGT-AAAILRYSG  145



Lambda      K        H        a         alpha
   0.321    0.140    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 772619276


Query= TCONS_00035635

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  119     4e-33
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  109     3e-29


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 119 bits (300),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 47/124 (38%), Positives = 63/124 (51%), Gaps = 16/124 (13%)

Query  259  DFPPETVPILLDFDTGDWVHFVITNNYTFEKVHFPRNLTPVMHPMHLHGHDFAILAQGRG  318
             FPP T  I L +  G  V +V+ N             T  +HP HLHGH F +L +G G
Sbjct  28   LFPPNTNVITLPY--GTVVEWVLQNT------------TTGVHPFHLHGHSFQVLGRGGG  73

Query  319  EFDP--SIVPKLDNPPRRDVVNVDTGSYVWIAFQVNNPGAWLLHCHIAFHVSSGLSLQFI  376
             +         L +P RRD V V  G +V I F+ +NPG WL HCHI +H+  G+  QF+
Sbjct  74   PWPEEDPKTYNLVDPVRRDTVQVPPGGWVAIRFRADNPGVWLFHCHILWHLDQGMMGQFV  133

Query  377  EQPK  380
             +P 
Sbjct  134  VRPG  137


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 109 bits (274),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 42/164 (26%), Positives = 63/164 (38%), Gaps = 24/164 (15%)

Query  6    DLGPWLLHDWYHDDVFSLLWVGETKNRGA-----IPESTILNGKGKFDCNHHNDTRCTGT  60
            +     L DWYH D   L        +       +P++ ++NGK                
Sbjct  1    EDYVITLSDWYHKDAKDLEKELLASGKAPTDFPPVPDAVLINGKD---------------  45

Query  61   GGEYFEVNFRKGVRYKFTIANTGTLLEYMFWIDGHNLTVIAADFVPIEPYVTDVVNVAMG  120
            G     +    G  Y+  I N        F I+GH +TV+  D V + P+  D +++  G
Sbjct  46   GASLATLTVTPGKTYRLRIINVALDDSLNFSIEGHKMTVVEVDGVYVNPFTVDSLDIFPG  105

Query  121  QRYEIIVEANADFTHGSNFWIYAQYCDEVDLLPHKAVGIVRYDE  164
            QRY ++V AN D     N+WI A            A  I+RY  
Sbjct  106  QRYSVLVTANQD---PGNYWIVASPNIPAFDNGT-AAAILRYSG  145



Lambda      K        H        a         alpha
   0.322    0.141    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00035636

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase. This ent...  119     4e-33
CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  109     3e-29


>CDD:462246 pfam07731, Cu-oxidase_2, Multicopper oxidase.  This entry contains 
many divergent copper oxidase-like domains that are not 
recognized by the pfam00394 model.
Length=138

 Score = 119 bits (300),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 47/124 (38%), Positives = 63/124 (51%), Gaps = 16/124 (13%)

Query  259  DFPPETVPILLDFDTGDWVHFVITNNYTFEKVHFPRNLTPVMHPMHLHGHDFAILAQGRG  318
             FPP T  I L +  G  V +V+ N             T  +HP HLHGH F +L +G G
Sbjct  28   LFPPNTNVITLPY--GTVVEWVLQNT------------TTGVHPFHLHGHSFQVLGRGGG  73

Query  319  EFDP--SIVPKLDNPPRRDVVNVDTGSYVWIAFQVNNPGAWLLHCHIAFHVSSGLSLQFI  376
             +         L +P RRD V V  G +V I F+ +NPG WL HCHI +H+  G+  QF+
Sbjct  74   PWPEEDPKTYNLVDPVRRDTVQVPPGGWVAIRFRADNPGVWLFHCHILWHLDQGMMGQFV  133

Query  377  EQPK  380
             +P 
Sbjct  134  VRPG  137


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 109 bits (274),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 42/164 (26%), Positives = 63/164 (38%), Gaps = 24/164 (15%)

Query  6    DLGPWLLHDWYHDDVFSLLWVGETKNRGA-----IPESTILNGKGKFDCNHHNDTRCTGT  60
            +     L DWYH D   L        +       +P++ ++NGK                
Sbjct  1    EDYVITLSDWYHKDAKDLEKELLASGKAPTDFPPVPDAVLINGKD---------------  45

Query  61   GGEYFEVNFRKGVRYKFTIANTGTLLEYMFWIDGHNLTVIAADFVPIEPYVTDVVNVAMG  120
            G     +    G  Y+  I N        F I+GH +TV+  D V + P+  D +++  G
Sbjct  46   GASLATLTVTPGKTYRLRIINVALDDSLNFSIEGHKMTVVEVDGVYVNPFTVDSLDIFPG  105

Query  121  QRYEIIVEANADFTHGSNFWIYAQYCDEVDLLPHKAVGIVRYDE  164
            QRY ++V AN D     N+WI A            A  I+RY  
Sbjct  106  QRYSVLVTANQD---PGNYWIVASPNIPAFDNGT-AAAILRYSG  145



Lambda      K        H        a         alpha
   0.322    0.141    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00031660

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF42...  348     8e-119


>CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF4243).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and eukaryotes. Proteins 
in this family are typically between 348 and 477 amino 
acids in length.
Length=336

 Score = 348 bits (895),  Expect = 8e-119, Method: Composition-based stats.
 Identities = 144/340 (42%), Positives = 182/340 (54%), Gaps = 12/340 (4%)

Query  51   HNHVAHSVLNTLALGGGPGDLQRAFDDGAEIQVPIPPMDRDAAASLSTPDQFRARMGSLE  110
            HNH+ H +L   ALG  P  LQ A+D  A  Q P  P D    A L T + +R  +G  E
Sbjct  2    HNHIPHHLLAAYALGASPEQLQAAYDANASYQRPAEPSDP---ADLITEENWRDHLGDEE  58

Query  111  QYPNFLVFFTKEIETRGYPAVVIEYCFSGTSIAESMFANLFEGLYHPLIHLALGIEFDQP  170
             Y  FL FF  EI  +G+ AV+ EY FSG   AE M   LF GL HPLIHL  G+EF QP
Sbjct  59   YYRAFLDFFEDEIARKGWKAVLEEYLFSGNEGAEPMLNRLFGGLLHPLIHLGYGLEFGQP  118

Query  171  SIVAEGLAQAACHDSMNIEPFLFGTDKLAKT-QDAPIDLNTPLLSLFHAVRDNEVLRAAA  229
            +IVAE LAQAA H   +    L   +K A +   AP    T LL +   V  +  L  A 
Sbjct  119  AIVAEALAQAAVHYDDDPSELLLSAEKAAASYTGAPSPYGTSLLEILDRVLRDPRLDGAG  178

Query  230  HRDHGDGVARVRDGILGRAREEISLIAARFRVDV--DELDHRAAEMISCAAYLAGSAQRP  287
              +      ++RDG+L RA +EI   A  +RV    D L+ +  E+   A  L G+AQRP
Sbjct  179  R-NEDPLFNKIRDGVLKRAGDEILEYANAWRVSPDEDPLEEKFEELQWAAVLLYGAAQRP  237

Query  288  GKARKIDFFHLHAVTASLGLIVLLQQ-PWVTPEQKARLIEWKARVDLVWYAASGAVELRR  346
             K  K DFF +H VT+SL L  LL   PW+ P  KARL+ WK R+DL  Y A G  EL  
Sbjct  238  PKKPKYDFFLMHLVTSSLFLRSLLPLLPWIHPSSKARLLRWKWRLDLAVYVARGRPELDL  297

Query  347  KDIVDYRPRH---GLTWDSLYQAVRRVHDDGHLAKFIRAL  383
             +I  Y P++   G  W+ + Q     HDDGH+ K +RAL
Sbjct  298  DEIRAYFPKYLSPGNDWEEIVQKA-LWHDDGHVVKLVRAL  336



Lambda      K        H        a         alpha
   0.322    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 544464920


Query= TCONS_00035637

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding                 71.1    3e-15


>CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding.  
Length=183

 Score = 71.1 bits (175),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 53/206 (26%), Positives = 85/206 (41%), Gaps = 27/206 (13%)

Query  65   GATGNCGTALIQNLLQSSTSKVHAYCRDRRKLLYLLPHLADNKQVDIFDGSIHDLPLITE  124
            GATG  G  L++ LL     +V A  R+  KL      L D+  V++ DG + D   + E
Sbjct  1    GATGKIGRLLVKQLLARGH-EVTALVRNPEKL----ADLEDHPGVEVVDGDVLDPDDLAE  55

Query  125  CVRNCHAVFLVISTNDNVPQCRMALDTATAVIQALRILHGEGASMPKLVLLSSATLDDQL  184
             +    AV   +               A  +I A      + A + + VL+SS  + D++
Sbjct  56   ALAGQDAVISALGGGGT------DETGAKNIIDAA-----KAAGVKRFVLVSSLGVGDEV  104

Query  185  SQNTAPWVRWILLKSASQVYQDLSQAEAFLRQQQ-DWISTIFIKPGGLSVDVQRGHRLSL  243
                 PW + +L             AE  LR    D+  TI ++PG L+     G+R++ 
Sbjct  105  PGPFGPWNKEML----GPYLAAKRAAEELLRASGLDY--TI-VRPGWLTDGPTTGYRVTG  157

Query  244  TEEKSP---LSYLDLAAAMIEAADDP  266
              E      +S  D+A  ++   DDP
Sbjct  158  KGEPFKGGSISRADVADVLVALLDDP  183



Lambda      K        H        a         alpha
   0.324    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 372672612


Query= TCONS_00031662

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430029 pfam08493, AflR, Aflatoxin regulatory protein. This do...  91.2    3e-23


>CDD:430029 pfam08493, AflR, Aflatoxin regulatory protein.  This domain is 
found in the aflatoxin regulatory protein (AflR) which is 
involved in the regulation of the biosynthesis of aflatoxin 
in the fungal genus Aspergillus. It occurs together with the 
fungal Zn(2)-Cys(6) binuclear cluster domain (pfam00172).
Length=99

 Score = 91.2 bits (227),  Expect = 3e-23, Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 53/86 (62%), Gaps = 8/86 (9%)

Query  224  SCRCLIRALDLLKHFEVIR-------REAEIESSLPSIDAVVEVNKQTTEAITGMLQCPC  276
            SC CL RALDLLK               +  + +  SI  V+  NKQ  EA++ +LQCPC
Sbjct  2    SCDCLARALDLLKSLSSPSSSCSSASGSSSPDQAPSSITTVLAENKQAIEAVSRILQCPC  61

Query  277  SQKDGYLLVLLALIVCKILDRYAAAA  302
            S+ DGYLL+LL+LIV KIL  YAAAA
Sbjct  62   SE-DGYLLLLLSLIVSKILAWYAAAA  86



Lambda      K        H        a         alpha
   0.317    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00035638

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425851 pfam00753, Lactamase_B, Metallo-beta-lactamase superfa...  83.6    3e-19


>CDD:425851 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily.  

Length=196

 Score = 83.6 bits (206),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 64/195 (33%), Gaps = 35/195 (18%)

Query  158  TLQGTNTYIVGTGRHRLLIDTGQGIPEWASLISSTLAGSSIELSHVLLTHWHGDHTGGVP  217
                 N+Y++  G   +LIDTG        L+ + L     ++  V+LTH H DH GG+ 
Sbjct  2    GPGQVNSYLIEGGGGAVLIDTGGSAEAALLLLLAALGLGPKDIDAVILTHGHFDHIGGLG  61

Query  218  DLLR---------------MYPDLSDSIYKH--------TPGKGQKPISDGQTFRVEGAT  254
            +L                 +  +                 P      + +G      G  
Sbjct  62   ELAEATDVPVIVVAEEARELLDEELGLAASRLGLPGPPVVPLPPDVVLEEGDGILGGGLG  121

Query  255  VRAVHTPGHSHDHMCFILEEENAMFTGDNVL----GHGSSAVEVLST--------WMSSL  302
            +   H PGH   H+         +FTGD +     G     +  L           + SL
Sbjct  122  LLVTHGPGHGPGHVVVYYGGGKVLFTGDLLFAGEIGRLDLPLGGLLVLHPSSAESSLESL  181

Query  303  RMMQSLRCAVGYPAH  317
              +  L+ AV  P H
Sbjct  182  LKLAKLKAAVIVPGH  196



Lambda      K        H        a         alpha
   0.320    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00035639

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425851 pfam00753, Lactamase_B, Metallo-beta-lactamase superfa...  83.6    3e-19


>CDD:425851 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily.  

Length=196

 Score = 83.6 bits (206),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 64/195 (33%), Gaps = 35/195 (18%)

Query  158  TLQGTNTYIVGTGRHRLLIDTGQGIPEWASLISSTLAGSSIELSHVLLTHWHGDHTGGVP  217
                 N+Y++  G   +LIDTG        L+ + L     ++  V+LTH H DH GG+ 
Sbjct  2    GPGQVNSYLIEGGGGAVLIDTGGSAEAALLLLLAALGLGPKDIDAVILTHGHFDHIGGLG  61

Query  218  DLLR---------------MYPDLSDSIYKH--------TPGKGQKPISDGQTFRVEGAT  254
            +L                 +  +                 P      + +G      G  
Sbjct  62   ELAEATDVPVIVVAEEARELLDEELGLAASRLGLPGPPVVPLPPDVVLEEGDGILGGGLG  121

Query  255  VRAVHTPGHSHDHMCFILEEENAMFTGDNVL----GHGSSAVEVLST--------WMSSL  302
            +   H PGH   H+         +FTGD +     G     +  L           + SL
Sbjct  122  LLVTHGPGHGPGHVVVYYGGGKVLFTGDLLFAGEIGRLDLPLGGLLVLHPSSAESSLESL  181

Query  303  RMMQSLRCAVGYPAH  317
              +  L+ AV  P H
Sbjct  182  LKLAKLKAAVIVPGH  196



Lambda      K        H        a         alpha
   0.320    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00031663

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425851 pfam00753, Lactamase_B, Metallo-beta-lactamase superfa...  83.6    3e-19


>CDD:425851 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily.  

Length=196

 Score = 83.6 bits (206),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 64/195 (33%), Gaps = 35/195 (18%)

Query  158  TLQGTNTYIVGTGRHRLLIDTGQGIPEWASLISSTLAGSSIELSHVLLTHWHGDHTGGVP  217
                 N+Y++  G   +LIDTG        L+ + L     ++  V+LTH H DH GG+ 
Sbjct  2    GPGQVNSYLIEGGGGAVLIDTGGSAEAALLLLLAALGLGPKDIDAVILTHGHFDHIGGLG  61

Query  218  DLLR---------------MYPDLSDSIYKH--------TPGKGQKPISDGQTFRVEGAT  254
            +L                 +  +                 P      + +G      G  
Sbjct  62   ELAEATDVPVIVVAEEARELLDEELGLAASRLGLPGPPVVPLPPDVVLEEGDGILGGGLG  121

Query  255  VRAVHTPGHSHDHMCFILEEENAMFTGDNVL----GHGSSAVEVLST--------WMSSL  302
            +   H PGH   H+         +FTGD +     G     +  L           + SL
Sbjct  122  LLVTHGPGHGPGHVVVYYGGGKVLFTGDLLFAGEIGRLDLPLGGLLVLHPSSAESSLESL  181

Query  303  RMMQSLRCAVGYPAH  317
              +  L+ AV  P H
Sbjct  182  LKLAKLKAAVIVPGH  196



Lambda      K        H        a         alpha
   0.320    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00031664

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425851 pfam00753, Lactamase_B, Metallo-beta-lactamase superfa...  83.6    3e-19


>CDD:425851 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily.  

Length=196

 Score = 83.6 bits (206),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 64/195 (33%), Gaps = 35/195 (18%)

Query  158  TLQGTNTYIVGTGRHRLLIDTGQGIPEWASLISSTLAGSSIELSHVLLTHWHGDHTGGVP  217
                 N+Y++  G   +LIDTG        L+ + L     ++  V+LTH H DH GG+ 
Sbjct  2    GPGQVNSYLIEGGGGAVLIDTGGSAEAALLLLLAALGLGPKDIDAVILTHGHFDHIGGLG  61

Query  218  DLLR---------------MYPDLSDSIYKH--------TPGKGQKPISDGQTFRVEGAT  254
            +L                 +  +                 P      + +G      G  
Sbjct  62   ELAEATDVPVIVVAEEARELLDEELGLAASRLGLPGPPVVPLPPDVVLEEGDGILGGGLG  121

Query  255  VRAVHTPGHSHDHMCFILEEENAMFTGDNVL----GHGSSAVEVLST--------WMSSL  302
            +   H PGH   H+         +FTGD +     G     +  L           + SL
Sbjct  122  LLVTHGPGHGPGHVVVYYGGGKVLFTGDLLFAGEIGRLDLPLGGLLVLHPSSAESSLESL  181

Query  303  RMMQSLRCAVGYPAH  317
              +  L+ AV  P H
Sbjct  182  LKLAKLKAAVIVPGH  196



Lambda      K        H        a         alpha
   0.320    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 515709544


Query= TCONS_00031666

Length=482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395719 pfam00891, Methyltransf_2, O-methyltransferase. This f...  86.7    4e-20


>CDD:395719 pfam00891, Methyltransf_2, O-methyltransferase.  This family 
includes a range of O-methyltransferases. These enzymes utilize 
S-adenosyl methionine.
Length=208

 Score = 86.7 bits (215),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 44/152 (29%), Positives = 64/152 (42%), Gaps = 24/152 (16%)

Query  304  SKVYPQLRFIVQDRGPVVKQGLEKVWPRENPEALHQGRVQFVEHSFFDTNPTEGADIYFL  363
              +YP  + IV D   VV+         E P      RV F    FF  +    AD Y L
Sbjct  79   VSLYPGCKGIVFDLPHVVEAAPTHFSAGEEP------RVTFHGGDFFK-DSLPEADAYIL  131

Query  364  RYVLHDWSDDYCVRILAAIRSSMAAHSRLLICDQVMNTTIGDPDLDSAPSPLPANYGYHT  423
            + VLHDWSD+ CV++L     +  A  ++++ + +         L + PS       Y  
Sbjct  132  KRVLHDWSDEKCVKLLKRCYKACPAGGKVILVESL---------LGADPSGPLHTQLY--  180

Query  424  RFSHSRDITMMSCINGIERTPAEFKGLLQAAG  455
                   + M++   G ERT AE+  LL  AG
Sbjct  181  ------SLNMLAQTEGRERTEAEYSELLTGAG  206



Lambda      K        H        a         alpha
   0.319    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 591999806


Query= TCONS_00031667

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  212     2e-67


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 212 bits (541),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 104/264 (39%), Positives = 138/264 (52%), Gaps = 17/264 (6%)

Query  7    NKTSPSELSEVNVILGETFAAAVKEFCQEHHVDIETIDVIGSHGQTIWLLSMPEPGEVRS  66
              T+   L E++  LG  FA AV    Q+ ++  E I  IG HGQT+     PE G V  
Sbjct  52   GATTLQRLGELDHQLGLLFADAVNALLQKQNLSPEQIRAIGCHGQTVR--HEPE-GAVPF  108

Query  67   ALTMAEGTFLASRTGITTVTDFRVSDQAAGRQGAPLIAFFDALLLHHPTKLRACQNIGGI  126
             + + +   +A RTGIT V DFR  D AAG QGAPL+  F   L   P + RA  NIGGI
Sbjct  109  TMQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGI  168

Query  127  ANVCFIPPDSHGGIDACYDFDTGPGNVFIDAVVRHYTNGAQEYDKDGEMGARGTVDQELV  186
            ANV  +PP +         FDTGPGN+ +DA ++ +    + YDKDGE  A G V+  L+
Sbjct  169  ANVSVLPPGA-----PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALL  221

Query  187  DEFLQNHPYFRLDPPKTTGREVFRDTLAFELIRKAESKGLSPDDVVATITRITAQAIVDH  246
               L   PYF L  PK+TGRE+F   L + L        ++  DV AT+  +TA  IVD 
Sbjct  222  AVLL-ADPYFALPAPKSTGRELF--NLPW-LETHLAKHPVAAADVQATLAELTAVTIVDA  277

Query  247  YRRYAPKDLPIDEIFMCGGGAHQT  270
              +  P     + + +CGGGA   
Sbjct  278  LLQAQPDC---ERLLVCGGGARNP  298



Lambda      K        H        a         alpha
   0.320    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00035640

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  212     2e-67


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 212 bits (541),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 104/264 (39%), Positives = 138/264 (52%), Gaps = 17/264 (6%)

Query  7    NKTSPSELSEVNVILGETFAAAVKEFCQEHHVDIETIDVIGSHGQTIWLLSMPEPGEVRS  66
              T+   L E++  LG  FA AV    Q+ ++  E I  IG HGQT+     PE G V  
Sbjct  52   GATTLQRLGELDHQLGLLFADAVNALLQKQNLSPEQIRAIGCHGQTVR--HEPE-GAVPF  108

Query  67   ALTMAEGTFLASRTGITTVTDFRVSDQAAGRQGAPLIAFFDALLLHHPTKLRACQNIGGI  126
             + + +   +A RTGIT V DFR  D AAG QGAPL+  F   L   P + RA  NIGGI
Sbjct  109  TMQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGI  168

Query  127  ANVCFIPPDSHGGIDACYDFDTGPGNVFIDAVVRHYTNGAQEYDKDGEMGARGTVDQELV  186
            ANV  +PP +         FDTGPGN+ +DA ++ +    + YDKDGE  A G V+  L+
Sbjct  169  ANVSVLPPGA-----PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALL  221

Query  187  DEFLQNHPYFRLDPPKTTGREVFRDTLAFELIRKAESKGLSPDDVVATITRITAQAIVDH  246
               L   PYF L  PK+TGRE+F   L + L        ++  DV AT+  +TA  IVD 
Sbjct  222  AVLL-ADPYFALPAPKSTGRELF--NLPW-LETHLAKHPVAAADVQATLAELTAVTIVDA  277

Query  247  YRRYAPKDLPIDEIFMCGGGAHQT  270
              +  P     + + +CGGGA   
Sbjct  278  LLQAQPDC---ERLLVCGGGARNP  298



Lambda      K        H        a         alpha
   0.320    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00031668

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  212     2e-67


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 212 bits (541),  Expect = 2e-67, Method: Composition-based stats.
 Identities = 104/264 (39%), Positives = 138/264 (52%), Gaps = 17/264 (6%)

Query  7    NKTSPSELSEVNVILGETFAAAVKEFCQEHHVDIETIDVIGSHGQTIWLLSMPEPGEVRS  66
              T+   L E++  LG  FA AV    Q+ ++  E I  IG HGQT+     PE G V  
Sbjct  52   GATTLQRLGELDHQLGLLFADAVNALLQKQNLSPEQIRAIGCHGQTVR--HEPE-GAVPF  108

Query  67   ALTMAEGTFLASRTGITTVTDFRVSDQAAGRQGAPLIAFFDALLLHHPTKLRACQNIGGI  126
             + + +   +A RTGIT V DFR  D AAG QGAPL+  F   L   P + RA  NIGGI
Sbjct  109  TMQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGI  168

Query  127  ANVCFIPPDSHGGIDACYDFDTGPGNVFIDAVVRHYTNGAQEYDKDGEMGARGTVDQELV  186
            ANV  +PP +         FDTGPGN+ +DA ++ +    + YDKDGE  A G V+  L+
Sbjct  169  ANVSVLPPGA-----PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALL  221

Query  187  DEFLQNHPYFRLDPPKTTGREVFRDTLAFELIRKAESKGLSPDDVVATITRITAQAIVDH  246
               L   PYF L  PK+TGRE+F   L + L        ++  DV AT+  +TA  IVD 
Sbjct  222  AVLL-ADPYFALPAPKSTGRELF--NLPW-LETHLAKHPVAAADVQATLAELTAVTIVDA  277

Query  247  YRRYAPKDLPIDEIFMCGGGAHQT  270
              +  P     + + +CGGGA   
Sbjct  278  LLQAQPDC---ERLLVCGGGARNP  298



Lambda      K        H        a         alpha
   0.320    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 322451200


Query= TCONS_00035641

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         200     9e-61
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            77.1    3e-16


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 200 bits (511),  Expect = 9e-61, Method: Composition-based stats.
 Identities = 107/342 (31%), Positives = 164/342 (48%), Gaps = 21/342 (6%)

Query  28   FFEGYDQGVMGGVNSAPTYVTEVGIGEPDGT-VTDTTHQGGIVSIYYLGCIFGCFAGGWL  86
            F  GYD GV+G   +   +    G+ +   +    +   G IVSI+ +GC  G    G L
Sbjct  10   FLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKL  69

Query  87   ADRIGRINGLLIGSIFALVGGALQAAI---QSSDFMLVARVITGIGTGALTGITPVLVSE  143
             DR GR   LLI ++  ++G  LQ A     S   ++V RV+ GIG G  + + P+ +SE
Sbjct  70   GDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISE  129

Query  144  TSAAEHRGGFLGYVFIANYLGISVAYWLSFGLAFINNGYSDVRWRFLLAFQCVPGLILVL  203
             +  + RG       +A   GI +AY    GL   +N      WR  L  Q VP L+L++
Sbjct  130  IAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSN---SDGWRIPLGLQLVPALLLII  186

Query  204  FIKMLPDSPRYLASVGRNEEARDLLTRIRAHKATPADIDHEYMEIVASSQESKPSSPIEF  263
             +  LP+SPR+L   GR EEAR++L ++R       D+D E  EI  S +  + +    +
Sbjct  187  GLLFLPESPRWLVEKGRLEEAREVLAKLR----GVPDVDRELDEIKDSLEAGQEAEKASW  242

Query  264  VKILIGKGGRPGSNLGRRAWLCVWLQIMASWTGITAVTAYSPVLLSQAGYSE-VTQNGLA  322
             ++   K  R      +R  + V LQI    TGI A+  YS  +    G S+      + 
Sbjct  243  KELFSTKTRR------QRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTIIV  296

Query  323  GGLNTIGIVGTIISAQIVDRLGRRKCLMLGSMVLFAVELVVS  364
            G +N    V T I+  +VDR GRR  L+LG+  +    +++ 
Sbjct  297  GVVN---FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILG  335


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 77.1 bits (190),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 104/292 (36%), Gaps = 50/292 (17%)

Query  68   IVSIYYLGCIFGCFAGGWLADRIGRINGLLIGSIFALVGGALQAAIQSSDFMLVARVITG  127
            +++++ LG        G L+DR GR   LLIG +   +G  L     S   +LV RV+ G
Sbjct  37   LLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG  96

Query  128  IGTGALTGITPVLVSETSAAEHRGGFLGYVFIANYLGISVAYWLSFGLAFINNGYSDVRW  187
            +G GAL      L+++    E RG  LG V     LG ++   L   LA      S   W
Sbjct  97   LGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLA------SLFGW  150

Query  188  RFLLAFQCVPGLILVLFIKMLPDSPRYLASVGRNEEARDLLTRIRAHKATPADIDHEYME  247
            R       +  L+  + + +    P         E    L+   +A              
Sbjct  151  RAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKA--------------  196

Query  248  IVASSQESKPSSPIEFVKILIGKGGRPGSNLGRRAWLCVWLQIMASWTGITAVTAYSPVL  307
                                          L R   L + L ++        +  Y P+ 
Sbjct  197  ------------------------------LLRDPVLWLLLALLLFGFAFFGLLTYLPLY  226

Query  308  LSQAGYSEVTQNGLAGGLNTIGIVGTIISAQIVDRLGRRKCLMLGSMVLFAV  359
                G S +    L G    +G +G ++  ++ DRLGRR+ L+L  ++L   
Sbjct  227  QEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILA  278



Lambda      K        H        a         alpha
   0.324    0.141    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 446726320


Query= TCONS_00031669

Length=166
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         95.0    5e-24


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 95.0 bits (237),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (49%), Gaps = 14/158 (9%)

Query  2    LPDSPRYLASVGRNEEARDLLTRIRAHKATPADIDHEYMEIVASSQESKPSSPIEFVKIL  61
            LP+SPR+L   GR EEAR++L ++R       D+D E  EI  S +  + +    + ++ 
Sbjct  191  LPESPRWLVEKGRLEEAREVLAKLR----GVPDVDRELDEIKDSLEAGQEAEKASWKELF  246

Query  62   IGKGGRPGSNLGRRAWLCVWLQIMASWTGITAVTAYSPVLLSQAGYSE-VTQNGLAGGLN  120
              K  R      +R  + V LQI    TGI A+  YS  +    G S+      + G +N
Sbjct  247  STKTRR------QRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTIIVGVVN  300

Query  121  TIGIVGTIISAQIVDRLGRRKCLMLGSMVLFAVELVVS  158
                V T I+  +VDR GRR  L+LG+  +    +++ 
Sbjct  301  ---FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILG  335



Lambda      K        H        a         alpha
   0.321    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00031670

Length=538
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         260     8e-82
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            91.3    1e-20


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 260 bits (667),  Expect = 8e-82, Method: Composition-based stats.
 Identities = 143/465 (31%), Positives = 222/465 (48%), Gaps = 31/465 (7%)

Query  28   FFEGYDQGVMGGVNSAPTYVTEVGIGEPDGT-VTDTTHQGGIVSIYYLGCIFGCFAGGWL  86
            F  GYD GV+G   +   +    G+ +   +    +   G IVSI+ +GC  G    G L
Sbjct  10   FLFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKL  69

Query  87   ADRIGRINGLLIGSIFALVGGALQAAI---QSSDFMLVARVITGIGTGALTGITPVLVSE  143
             DR GR   LLI ++  ++G  LQ A     S   ++V RV+ GIG G  + + P+ +SE
Sbjct  70   GDRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISE  129

Query  144  TSAAEHRGGFLGYVFIANYLGISVAYWLSFGLAFINNGYSDVRWRFLLAFQCVPGLILVL  203
             +  + RG       +A   GI +AY    GL   +N      WR  L  Q VP L+L++
Sbjct  130  IAPKKLRGALGSLYQLAITFGILLAYIFGLGLNKTSN---SDGWRIPLGLQLVPALLLII  186

Query  204  FIKMLPDSPRYLASVGRNEEARDLLTRIRAHKATPADIDHEYMEIVASSQESKPSSPIEF  263
             +  LP+SPR+L   GR EEAR++L ++R       D+D E  EI  S +  + +    +
Sbjct  187  GLLFLPESPRWLVEKGRLEEAREVLAKLR----GVPDVDRELDEIKDSLEAGQEAEKASW  242

Query  264  VKILIGKGGRPGSNLGRRAWLCVWLQIMASWTGITAVTAYSPVLLSQAGYSE-VTQNGLA  322
             ++   K  R      +R  + V LQI    TGI A+  YS  +    G S+      + 
Sbjct  243  KELFSTKTRR------QRLLIGVMLQIFQQLTGINAIFYYSTTIFENLGLSDSFLVTIIV  296

Query  323  GGLNTIGIVGTIISAQIVDRLGRRKCLMLGSMVLFAVELVAGGVYEGSLQNPSKAAQYAP  382
            G +N    V T I+  +VDR GRR  L+LG+  +    ++ G V   +L   SK+     
Sbjct  297  GVVN---FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFVILGIV---ALLGVSKSDWAGI  350

Query  383  AAVAMLFLFNLGYAATWGTVAFLVPTEIFPSDLRAQGNGF-GITGWAIG--VGMTTLVNP  439
             A+  + LF   +A  WG V +++ +E+FP  +R++         W     +G      P
Sbjct  351  VAIVFIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLF---P  407

Query  440  IMFGSLKSRSYFLL-SGLNLLWIPIVYLLYPETCNRSLESIDALF  483
            I+  ++     F + +GL +L+I  V+   PET  R+LE ID LF
Sbjct  408  IITDAIGLGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 91.3 bits (227),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 76/363 (21%), Positives = 128/363 (35%), Gaps = 60/363 (17%)

Query  68   IVSIYYLGCIFGCFAGGWLADRIGRINGLLIGSIFALVGGALQAAIQSSDFMLVARVITG  127
            +++++ LG        G L+DR GR   LLIG +   +G  L     S   +LV RV+ G
Sbjct  37   LLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG  96

Query  128  IGTGALTGITPVLVSETSAAEHRGGFLGYVFIANYLGISVAYWLSFGLAFINNGYSDVRW  187
            +G GAL      L+++    E RG  LG V     LG ++   L   LA      S   W
Sbjct  97   LGAGALFPAALALIADWFPPEERGRALGLVSAGFGLGAALGPLLGGLLA------SLFGW  150

Query  188  RFLLAFQCVPGLILVLFIKMLPDSPRYLASVGRNEEARDLLTRIRAHKATPADIDHEYME  247
            R       +  L+  + + +    P         E    L+   +A              
Sbjct  151  RAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEARLSLIVAWKA--------------  196

Query  248  IVASSQESKPSSPIEFVKILIGKGGRPGSNLGRRAWLCVWLQIMASWTGITAVTAYSPVL  307
                                          L R   L + L ++        +  Y P+ 
Sbjct  197  ------------------------------LLRDPVLWLLLALLLFGFAFFGLLTYLPLY  226

Query  308  LSQAGYSEVTQNGLAGGLNTIGIVGTIISAQIVDRLGRRKCLMLGSMVLFAVELVAGGVY  367
                G S +    L G    +G +G ++  ++ DRLGRR+ L+L  ++L       G + 
Sbjct  227  QEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILA--ALGLLL  284

Query  368  EGSLQNPSKAAQYAPAAVAMLFLFNLGYAATWGTVAFLVPTEIFPSDLRAQGNGFGITGW  427
                 +           +  L L   G+   +  +  LV +++ P + R   +G   T  
Sbjct  285  LSLTLSS-------LWLLLALLLLGFGFGLVFPALNALV-SDLAPKEERGTASGLYNTAG  336

Query  428  AIG  430
            ++G
Sbjct  337  SLG  339



Lambda      K        H        a         alpha
   0.323    0.139    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 676787502


Query= TCONS_00031671

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  139     2e-40


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 139 bits (353),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 42/137 (31%), Positives = 67/137 (49%), Gaps = 3/137 (2%)

Query  67   AIVEVTSTSEVSETVQFARKHHINFVTEAGGHSTTGSSATHGGLVISLAKMRRVLT-DPA  125
            A+V   S  EV+  V+ A ++ +  +   GG S  G +   GG+V+ L+++  +L  DP 
Sbjct  3    AVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGGAVQTGGIVLDLSRLNGILEIDPE  62

Query  126  SKTVCVQGGAIWDDVNESTAAYGLAVVGSTASH--TGVAGTTLGGGFGWLTGRYGLISDN  183
              T  V+ G    D+  + AA GL +     S     V G       G+ + +YGL  DN
Sbjct  63   DGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLTRDN  122

Query  184  LLSVRMVLADGTIVEAS  200
            +L + +VLADG +V   
Sbjct  123  VLGLEVVLADGEVVRLG  139



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00035642

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  139     2e-40


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 139 bits (353),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 42/137 (31%), Positives = 67/137 (49%), Gaps = 3/137 (2%)

Query  67   AIVEVTSTSEVSETVQFARKHHINFVTEAGGHSTTGSSATHGGLVISLAKMRRVLT-DPA  125
            A+V   S  EV+  V+ A ++ +  +   GG S  G +   GG+V+ L+++  +L  DP 
Sbjct  3    AVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGGAVQTGGIVLDLSRLNGILEIDPE  62

Query  126  SKTVCVQGGAIWDDVNESTAAYGLAVVGSTASH--TGVAGTTLGGGFGWLTGRYGLISDN  183
              T  V+ G    D+  + AA GL +     S     V G       G+ + +YGL  DN
Sbjct  63   DGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLTRDN  122

Query  184  LLSVRMVLADGTIVEAS  200
            +L + +VLADG +V   
Sbjct  123  VLGLEVVLADGEVVRLG  139



Lambda      K        H        a         alpha
   0.320    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00031672

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00035643

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00031673

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00031674

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00031675

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00031676

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427725 pfam04120, Iron_permease, Low affinity iron permease       104     2e-27


>CDD:427725 pfam04120, Iron_permease, Low affinity iron permease.  
Length=128

 Score = 104 bits (262),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 22/79 (28%), Positives = 35/79 (44%), Gaps = 2/79 (3%)

Query  397  TQRVSDAMNRVCAHEITVVAGFLTIVGLIAGASAMKWTMTGQLLCNVPPSLIESFFMIIL  456
             QR ++A+ R     I  V     IV   A      ++ T QL+ N   ++I +F M+ L
Sbjct  1    FQRFANAVTRAAGSPIAFVLALAVIVLWAATGPLFHYSDTWQLVINTGTTII-TFLMVFL  59

Query  457  ITGHNSADDRK-RMDLRNL  474
            I    + D R  ++ L  L
Sbjct  60   IQNTQNRDSRAIQLKLDEL  78



Lambda      K        H        a         alpha
   0.324    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 619252994


Query= TCONS_00031677

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427725 pfam04120, Iron_permease, Low affinity iron permease       104     2e-27


>CDD:427725 pfam04120, Iron_permease, Low affinity iron permease.  
Length=128

 Score = 104 bits (262),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 22/79 (28%), Positives = 35/79 (44%), Gaps = 2/79 (3%)

Query  397  TQRVSDAMNRVCAHEITVVAGFLTIVGLIAGASAMKWTMTGQLLCNVPPSLIESFFMIIL  456
             QR ++A+ R     I  V     IV   A      ++ T QL+ N   ++I +F M+ L
Sbjct  1    FQRFANAVTRAAGSPIAFVLALAVIVLWAATGPLFHYSDTWQLVINTGTTII-TFLMVFL  59

Query  457  ITGHNSADDRK-RMDLRNL  474
            I    + D R  ++ L  L
Sbjct  60   IQNTQNRDSRAIQLKLDEL  78



Lambda      K        H        a         alpha
   0.324    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 619252994


Query= TCONS_00035645

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase. This...  144     3e-41


>CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase.  This family 
includes a variety of carbohydrate and pyrimidine kinases.
Length=294

 Score = 144 bits (365),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 97/335 (29%), Positives = 140/335 (42%), Gaps = 48/335 (14%)

Query  7    HICVVGSLNIDFAVSTSRCPGPGETLTANSLSVTAGGKGANQAVACGRASHTSSDASKVT  66
             + V+G  NID   +    PG  E +  +++    GGKGAN AVA  R            
Sbjct  1    KVVVIGEANIDLIGNVEGLPG--ELVRVSTVEKGPGGKGANVAVALARLG--------GD  50

Query  67   VSMIGAVGADDVYYATLIRPTLEDSGVDTKYVEEKTDSRTGSATIIVEDSAHGENRILVV  126
            V+ IGAVG D+  +   +   L+  GVDT YV    D+RTG+A I V     GE  I+  
Sbjct  51   VAFIGAVGDDN--FGEFLLQELKKEGVDTDYVVIDEDTRTGTALIEV--DGDGERTIVFN  106

Query  127  PGANHAGMDDVSKILATIQSYPQAPALIVLQGEIP---RHTTLDLMRH-FNQPGNQTHML  182
             GA         + L   +   +   L+ + G +P      TL+ +       G     L
Sbjct  107  RGAAADL---TPEELEENEDLLENADLLYISGSLPLGLPEATLEELIEAAKNGGTFDPNL  163

Query  183  FNPAPVFADGVPVDALSNTSVLVMNETEAVQM--QASISPESAISTQTTDELKPEDLASQ  240
             +P     + +  + L    +L  NE E   +        E A+               +
Sbjct  164  LDPLGAAREALL-ELLPLADLLKPNEEELEALTGAKLDDIEEAL-----------AALHK  211

Query  241  FHALANVRIVLITLGAKGVFFSTRTGRKGFVAGVRVQKVVDTTAAGDTFVGYFAAAFAEF  300
              A   ++ V++TLGA G       G +  V  V   KVVDTT AGD+FVG         
Sbjct  212  LLA-KGIKTVIVTLGADGALVVEGDG-EVHVPAVPKVKVVDTTGAGDSFVG---------  260

Query  301  IATSAPLEEFDKTIEQAVRRANCAAALCVQRPGAM  335
               +  L    K++E+A+R AN AAAL VQ+ GA 
Sbjct  261  GFLAGLLAG--KSLEEALRFANAAAALVVQKSGAQ  293



Lambda      K        H        a         alpha
   0.315    0.129    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00031679

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00031680

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00031681

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00035646

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00031682

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00031683

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:379112 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) do...  72.8    3e-17
CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) fa...  58.3    6e-12


>CDD:379112 pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain.  
This domain catalyzes N-acetyltransferase reactions.
Length=139

 Score = 72.8 bits (179),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 35/148 (24%), Positives = 53/148 (36%), Gaps = 10/148 (7%)

Query  13   RLLYRAPEDNPADDAFFHALYADPVVGSMATTALLRPLSTKERKELRAKLSDVFMSVMIC  72
            RLL R       D      L +DP V        L     +E         +        
Sbjct  1    RLLLRPLT--EEDAEALFELLSDPEVMRYGVPWPLTLEEAREWLARIWAADEAERGYGWA  58

Query  73   IIPDEGSDKEPETIGVVSLKKEASDFAHNRTYELGISIARQNQDKGYGSEAISWMLDWAF  132
            I       K+   IG + L     +       ELG  +      KGY +EA+  +L++AF
Sbjct  59   IE-----LKDTGFIGSIGLYDIDGE---PERAELGYWLGPDYWGKGYATEAVRALLEYAF  110

Query  133  LTAGLHRVELVVAEWNERAQKVYRRLGF  160
               GL R+   +   N  +++V  +LGF
Sbjct  111  EELGLPRLVARIDPENTASRRVLEKLGF  138


>CDD:395465 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.  
This family contains proteins with N-acetyltransferase functions 
such as Elp3-related proteins.
Length=116

 Score = 58.3 bits (141),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 23/75 (31%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query  86   IGVVSLKKEASDFAHNRTYELGISIARQNQDKGYGSEAISWMLDWAFLTAGLHRVELVVA  145
            +G  SL     D         G+++A + + KG G+  +  +L+WA    G  R+ L VA
Sbjct  45   VGFASLSII--DDEPPVGEIEGLAVAPEYRGKGIGTALLQALLEWAR-ERGCERIFLEVA  101

Query  146  EWNERAQKVYRRLGF  160
              N  A  +Y +LGF
Sbjct  102  ADNLAAIALYEKLGF  116



Lambda      K        H        a         alpha
   0.320    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00035647

Length=226


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234517544


Query= TCONS_00031686

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00031688

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00031687

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00031685

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00031690

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  158     1e-47
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            117     1e-31


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 158 bits (403),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 71/237 (30%), Positives = 106/237 (45%), Gaps = 45/237 (19%)

Query  105  FEVRKALGKGKFGRVYLAHKQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  164
            +EV + LG G FG VY A  + TG + A+K + K KI++ + +K +  +I+I   L HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKK-DKNILREIKILKKLNHPN  59

Query  165  VLRLFSHFDDSKRIILILEYAGKGELYKHLQREDRFPEWKSAQYIAQMANALLYLHRKHV  224
            ++RL+  F+D   + L+LEY   G L+  L  +  F E ++   + Q+   L        
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL--------  111

Query  225  IHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLDYLPPEMVDPRKCDKPYDQ  284
                                               T  GT  Y+ PE++       PY  
Sbjct  112  ----------------------------ESGSSLTTFVGTPWYMAPEVLG----GNPYGP  139

Query  285  KVDIWSLGVLLYEFLVGRAPFEDTPVMTQRRIAKGDM----TVPSFVSPEAKDLIKK  337
            KVD+WSLG +LYE L G+ PF          +          +PS +S EAKDL+KK
Sbjct  140  KVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKK  196


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 117 bits (296),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 106/241 (44%), Gaps = 18/241 (7%)

Query  109  KALGKGKFGRVYLAH----KQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  164
            + LG+G FG VY        ++T    A+K L +   ++ R +     +  I   L HPN
Sbjct  5    EKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERED--FLEEASIMKKLDHPN  62

Query  165  VLRLFSHFDDSKRIILILEYAGKGELYKHLQR-EDRFPEWKSAQYIAQMANALLYLHRKH  223
            +++L       + + ++ EY   G+L   L++ + +           Q+A  + YL  K+
Sbjct  63   IVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLESKN  122

Query  224  VIHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLD----YLPPEMVDPRKCD  279
             +HRD+   N LV  +  +K+SDFG S        + + G       ++ PE +   K  
Sbjct  123  FVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLKDGK--  180

Query  280  KPYDQKVDIWSLGVLLYEFL-VGRAPFED-TPVMTQRRIAKGD-MTVPSFVSPEAKDLIK  336
              +  K D+WS GVLL+E   +G  P+   +       +  G  +  P     E  DL+K
Sbjct  181  --FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMK  238

Query  337  K  337
            +
Sbjct  239  Q  239



Lambda      K        H        a         alpha
   0.322    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00031689

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  158     1e-47
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            117     1e-31


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 158 bits (403),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 71/237 (30%), Positives = 106/237 (45%), Gaps = 45/237 (19%)

Query  106  FEVRKALGKGKFGRVYLAHKQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  165
            +EV + LG G FG VY A  + TG + A+K + K KI++ + +K +  +I+I   L HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKK-DKNILREIKILKKLNHPN  59

Query  166  VLRLFSHFDDSKRIILILEYAGKGELYKHLQREDRFPEWKSAQYIAQMANALLYLHRKHV  225
            ++RL+  F+D   + L+LEY   G L+  L  +  F E ++   + Q+   L        
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL--------  111

Query  226  IHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLDYLPPEMVDPRKCDKPYDQ  285
                                               T  GT  Y+ PE++       PY  
Sbjct  112  ----------------------------ESGSSLTTFVGTPWYMAPEVLG----GNPYGP  139

Query  286  KVDIWSLGVLLYEFLVGRAPFEDTPVMTQRRIAKGDM----TVPSFVSPEAKDLIKK  338
            KVD+WSLG +LYE L G+ PF          +          +PS +S EAKDL+KK
Sbjct  140  KVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKK  196


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 117 bits (297),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 106/241 (44%), Gaps = 18/241 (7%)

Query  110  KALGKGKFGRVYLAH----KQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  165
            + LG+G FG VY        ++T    A+K L +   ++ R +     +  I   L HPN
Sbjct  5    EKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERED--FLEEASIMKKLDHPN  62

Query  166  VLRLFSHFDDSKRIILILEYAGKGELYKHLQR-EDRFPEWKSAQYIAQMANALLYLHRKH  224
            +++L       + + ++ EY   G+L   L++ + +           Q+A  + YL  K+
Sbjct  63   IVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLESKN  122

Query  225  VIHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLD----YLPPEMVDPRKCD  280
             +HRD+   N LV  +  +K+SDFG S        + + G       ++ PE +   K  
Sbjct  123  FVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLKDGK--  180

Query  281  KPYDQKVDIWSLGVLLYEFL-VGRAPFED-TPVMTQRRIAKGD-MTVPSFVSPEAKDLIK  337
              +  K D+WS GVLL+E   +G  P+   +       +  G  +  P     E  DL+K
Sbjct  181  --FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMK  238

Query  338  K  338
            +
Sbjct  239  Q  239



Lambda      K        H        a         alpha
   0.322    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00035648

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  158     1e-47
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            117     1e-31


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 158 bits (403),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 71/237 (30%), Positives = 106/237 (45%), Gaps = 45/237 (19%)

Query  106  FEVRKALGKGKFGRVYLAHKQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  165
            +EV + LG G FG VY A  + TG + A+K + K KI++ + +K +  +I+I   L HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKK-DKNILREIKILKKLNHPN  59

Query  166  VLRLFSHFDDSKRIILILEYAGKGELYKHLQREDRFPEWKSAQYIAQMANALLYLHRKHV  225
            ++RL+  F+D   + L+LEY   G L+  L  +  F E ++   + Q+   L        
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL--------  111

Query  226  IHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLDYLPPEMVDPRKCDKPYDQ  285
                                               T  GT  Y+ PE++       PY  
Sbjct  112  ----------------------------ESGSSLTTFVGTPWYMAPEVLG----GNPYGP  139

Query  286  KVDIWSLGVLLYEFLVGRAPFEDTPVMTQRRIAKGDM----TVPSFVSPEAKDLIKK  338
            KVD+WSLG +LYE L G+ PF          +          +PS +S EAKDL+KK
Sbjct  140  KVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKK  196


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 117 bits (297),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 106/241 (44%), Gaps = 18/241 (7%)

Query  110  KALGKGKFGRVYLAH----KQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  165
            + LG+G FG VY        ++T    A+K L +   ++ R +     +  I   L HPN
Sbjct  5    EKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERED--FLEEASIMKKLDHPN  62

Query  166  VLRLFSHFDDSKRIILILEYAGKGELYKHLQR-EDRFPEWKSAQYIAQMANALLYLHRKH  224
            +++L       + + ++ EY   G+L   L++ + +           Q+A  + YL  K+
Sbjct  63   IVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLESKN  122

Query  225  VIHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLD----YLPPEMVDPRKCD  280
             +HRD+   N LV  +  +K+SDFG S        + + G       ++ PE +   K  
Sbjct  123  FVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLKDGK--  180

Query  281  KPYDQKVDIWSLGVLLYEFL-VGRAPFED-TPVMTQRRIAKGD-MTVPSFVSPEAKDLIK  337
              +  K D+WS GVLL+E   +G  P+   +       +  G  +  P     E  DL+K
Sbjct  181  --FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMK  238

Query  338  K  338
            +
Sbjct  239  Q  239



Lambda      K        H        a         alpha
   0.322    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00031692

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  158     1e-47
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            117     1e-31


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 158 bits (403),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 71/237 (30%), Positives = 106/237 (45%), Gaps = 45/237 (19%)

Query  105  FEVRKALGKGKFGRVYLAHKQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  164
            +EV + LG G FG VY A  + TG + A+K + K KI++ + +K +  +I+I   L HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKK-DKNILREIKILKKLNHPN  59

Query  165  VLRLFSHFDDSKRIILILEYAGKGELYKHLQREDRFPEWKSAQYIAQMANALLYLHRKHV  224
            ++RL+  F+D   + L+LEY   G L+  L  +  F E ++   + Q+   L        
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL--------  111

Query  225  IHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLDYLPPEMVDPRKCDKPYDQ  284
                                               T  GT  Y+ PE++       PY  
Sbjct  112  ----------------------------ESGSSLTTFVGTPWYMAPEVLG----GNPYGP  139

Query  285  KVDIWSLGVLLYEFLVGRAPFEDTPVMTQRRIAKGDM----TVPSFVSPEAKDLIKK  337
            KVD+WSLG +LYE L G+ PF          +          +PS +S EAKDL+KK
Sbjct  140  KVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKK  196


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 117 bits (296),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 106/241 (44%), Gaps = 18/241 (7%)

Query  109  KALGKGKFGRVYLAH----KQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  164
            + LG+G FG VY        ++T    A+K L +   ++ R +     +  I   L HPN
Sbjct  5    EKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERED--FLEEASIMKKLDHPN  62

Query  165  VLRLFSHFDDSKRIILILEYAGKGELYKHLQR-EDRFPEWKSAQYIAQMANALLYLHRKH  223
            +++L       + + ++ EY   G+L   L++ + +           Q+A  + YL  K+
Sbjct  63   IVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLESKN  122

Query  224  VIHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLD----YLPPEMVDPRKCD  279
             +HRD+   N LV  +  +K+SDFG S        + + G       ++ PE +   K  
Sbjct  123  FVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLKDGK--  180

Query  280  KPYDQKVDIWSLGVLLYEFL-VGRAPFED-TPVMTQRRIAKGD-MTVPSFVSPEAKDLIK  336
              +  K D+WS GVLL+E   +G  P+   +       +  G  +  P     E  DL+K
Sbjct  181  --FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMK  238

Query  337  K  337
            +
Sbjct  239  Q  239



Lambda      K        H        a         alpha
   0.322    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00031691

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  158     1e-47
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            117     1e-31


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 158 bits (403),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 71/237 (30%), Positives = 106/237 (45%), Gaps = 45/237 (19%)

Query  105  FEVRKALGKGKFGRVYLAHKQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  164
            +EV + LG G FG VY A  + TG + A+K + K KI++ + +K +  +I+I   L HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKK-DKNILREIKILKKLNHPN  59

Query  165  VLRLFSHFDDSKRIILILEYAGKGELYKHLQREDRFPEWKSAQYIAQMANALLYLHRKHV  224
            ++RL+  F+D   + L+LEY   G L+  L  +  F E ++   + Q+   L        
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL--------  111

Query  225  IHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLDYLPPEMVDPRKCDKPYDQ  284
                                               T  GT  Y+ PE++       PY  
Sbjct  112  ----------------------------ESGSSLTTFVGTPWYMAPEVLG----GNPYGP  139

Query  285  KVDIWSLGVLLYEFLVGRAPFEDTPVMTQRRIAKGDM----TVPSFVSPEAKDLIKK  337
            KVD+WSLG +LYE L G+ PF          +          +PS +S EAKDL+KK
Sbjct  140  KVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKK  196


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 117 bits (296),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 106/241 (44%), Gaps = 18/241 (7%)

Query  109  KALGKGKFGRVYLAH----KQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  164
            + LG+G FG VY        ++T    A+K L +   ++ R +     +  I   L HPN
Sbjct  5    EKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERED--FLEEASIMKKLDHPN  62

Query  165  VLRLFSHFDDSKRIILILEYAGKGELYKHLQR-EDRFPEWKSAQYIAQMANALLYLHRKH  223
            +++L       + + ++ EY   G+L   L++ + +           Q+A  + YL  K+
Sbjct  63   IVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLESKN  122

Query  224  VIHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLD----YLPPEMVDPRKCD  279
             +HRD+   N LV  +  +K+SDFG S        + + G       ++ PE +   K  
Sbjct  123  FVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLKDGK--  180

Query  280  KPYDQKVDIWSLGVLLYEFL-VGRAPFED-TPVMTQRRIAKGD-MTVPSFVSPEAKDLIK  336
              +  K D+WS GVLL+E   +G  P+   +       +  G  +  P     E  DL+K
Sbjct  181  --FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMK  238

Query  337  K  337
            +
Sbjct  239  Q  239



Lambda      K        H        a         alpha
   0.322    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 412120760


Query= TCONS_00035650

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  162     1e-48
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            118     1e-31


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 162 bits (412),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 108/248 (44%), Gaps = 46/248 (19%)

Query  105  FEVRKALGKGKFGRVYLAHKQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  164
            +EV + LG G FG VY A  + TG + A+K + K KI++ + +K +  +I+I   L HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKK-DKNILREIKILKKLNHPN  59

Query  165  VLRLFSHFDDSKRIILILEYAGKGELYKHLQREDRFPEWKSAQYIAQMANALLYLHRKHV  224
            ++RL+  F+D   + L+LEY   G L+  L  +  F E ++   + Q+   L        
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL--------  111

Query  225  IHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLDYLPPEMVDPRKCDKPYDQ  284
                                               T  GT  Y+ PE++       PY  
Sbjct  112  ----------------------------ESGSSLTTFVGTPWYMAPEVLG----GNPYGP  139

Query  285  KVDIWSLGVLLYEFLVGRAPFEDTPVMTQRRIAKGDM----TVPSFVSPEAKDLIKKNIW  340
            KVD+WSLG +LYE L G+ PF          +          +PS +S EAKDL+KK + 
Sbjct  140  KVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKK-LL  198

Query  341  ASCHRSRP  348
                  R 
Sbjct  199  KKDPSKRL  206


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 118 bits (299),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 110/254 (43%), Gaps = 23/254 (9%)

Query  109  KALGKGKFGRVYLAH----KQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  164
            + LG+G FG VY        ++T    A+K L +   ++ R +     +  I   L HPN
Sbjct  5    EKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERED--FLEEASIMKKLDHPN  62

Query  165  VLRLFSHFDDSKRIILILEYAGKGELYKHLQR-EDRFPEWKSAQYIAQMANALLYLHRKH  223
            +++L       + + ++ EY   G+L   L++ + +           Q+A  + YL  K+
Sbjct  63   IVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLESKN  122

Query  224  VIHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLD----YLPPEMVDPRKCD  279
             +HRD+   N LV  +  +K+SDFG S        + + G       ++ PE +   K  
Sbjct  123  FVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLKDGK--  180

Query  280  KPYDQKVDIWSLGVLLYEFL-VGRAPFED-TPVMTQRRIAKGD-MTVPSFVSPEAKDLIK  336
              +  K D+WS GVLL+E   +G  P+   +       +  G  +  P     E  DL+K
Sbjct  181  --FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMK  238

Query  337  KNIWASCHRSRPEN  350
            +     C    PE+
Sbjct  239  Q-----CWAYDPED  247



Lambda      K        H        a         alpha
   0.322    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00035649

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  159     6e-49
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            117     4e-32


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 159 bits (405),  Expect = 6e-49, Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 108/248 (44%), Gaps = 46/248 (19%)

Query  2    FEVRKALGKGKFGRVYLAHKQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  61
            +EV + LG G FG VY A  + TG + A+K + K KI++ + +K +  +I+I   L HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKK-DKNILREIKILKKLNHPN  59

Query  62   VLRLFSHFDDSKRIILILEYAGKGELYKHLQREDRFPEWKSAQYIAQMANALLYLHRKHV  121
            ++RL+  F+D   + L+LEY   G L+  L  +  F E ++   + Q+   L        
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL--------  111

Query  122  IHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLDYLPPEMVDPRKCDKPYDQ  181
                                               T  GT  Y+ PE++       PY  
Sbjct  112  ----------------------------ESGSSLTTFVGTPWYMAPEVLG----GNPYGP  139

Query  182  KVDIWSLGVLLYEFLVGRAPFEDTPVMTQRRIAKGDM----TVPSFVSPEAKDLIKKNIW  237
            KVD+WSLG +LYE L G+ PF          +          +PS +S EAKDL+KK + 
Sbjct  140  KVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKK-LL  198

Query  238  ASCHRSRP  245
                  R 
Sbjct  199  KKDPSKRL  206


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 117 bits (295),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 110/254 (43%), Gaps = 23/254 (9%)

Query  6    KALGKGKFGRVYLAH----KQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  61
            + LG+G FG VY        ++T    A+K L +   ++ R +     +  I   L HPN
Sbjct  5    EKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERED--FLEEASIMKKLDHPN  62

Query  62   VLRLFSHFDDSKRIILILEYAGKGELYKHLQR-EDRFPEWKSAQYIAQMANALLYLHRKH  120
            +++L       + + ++ EY   G+L   L++ + +           Q+A  + YL  K+
Sbjct  63   IVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLESKN  122

Query  121  VIHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLD----YLPPEMVDPRKCD  176
             +HRD+   N LV  +  +K+SDFG S        + + G       ++ PE +   K  
Sbjct  123  FVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLKDGK--  180

Query  177  KPYDQKVDIWSLGVLLYEFL-VGRAPFED-TPVMTQRRIAKGD-MTVPSFVSPEAKDLIK  233
              +  K D+WS GVLL+E   +G  P+   +       +  G  +  P     E  DL+K
Sbjct  181  --FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMK  238

Query  234  KNIWASCHRSRPEN  247
            +     C    PE+
Sbjct  239  Q-----CWAYDPED  247



Lambda      K        H        a         alpha
   0.323    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0745    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00031693

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  162     1e-48
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            118     1e-31


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 162 bits (412),  Expect = 1e-48, Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 108/248 (44%), Gaps = 46/248 (19%)

Query  105  FEVRKALGKGKFGRVYLAHKQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  164
            +EV + LG G FG VY A  + TG + A+K + K KI++ + +K +  +I+I   L HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKK-DKNILREIKILKKLNHPN  59

Query  165  VLRLFSHFDDSKRIILILEYAGKGELYKHLQREDRFPEWKSAQYIAQMANALLYLHRKHV  224
            ++RL+  F+D   + L+LEY   G L+  L  +  F E ++   + Q+   L        
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL--------  111

Query  225  IHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLDYLPPEMVDPRKCDKPYDQ  284
                                               T  GT  Y+ PE++       PY  
Sbjct  112  ----------------------------ESGSSLTTFVGTPWYMAPEVLG----GNPYGP  139

Query  285  KVDIWSLGVLLYEFLVGRAPFEDTPVMTQRRIAKGDM----TVPSFVSPEAKDLIKKNIW  340
            KVD+WSLG +LYE L G+ PF          +          +PS +S EAKDL+KK + 
Sbjct  140  KVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKK-LL  198

Query  341  ASCHRSRP  348
                  R 
Sbjct  199  KKDPSKRL  206


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 118 bits (299),  Expect = 1e-31, Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 110/254 (43%), Gaps = 23/254 (9%)

Query  109  KALGKGKFGRVYLAH----KQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  164
            + LG+G FG VY        ++T    A+K L +   ++ R +     +  I   L HPN
Sbjct  5    EKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERED--FLEEASIMKKLDHPN  62

Query  165  VLRLFSHFDDSKRIILILEYAGKGELYKHLQR-EDRFPEWKSAQYIAQMANALLYLHRKH  223
            +++L       + + ++ EY   G+L   L++ + +           Q+A  + YL  K+
Sbjct  63   IVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLESKN  122

Query  224  VIHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLD----YLPPEMVDPRKCD  279
             +HRD+   N LV  +  +K+SDFG S        + + G       ++ PE +   K  
Sbjct  123  FVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLKDGK--  180

Query  280  KPYDQKVDIWSLGVLLYEFL-VGRAPFED-TPVMTQRRIAKGD-MTVPSFVSPEAKDLIK  336
              +  K D+WS GVLL+E   +G  P+   +       +  G  +  P     E  DL+K
Sbjct  181  --FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMK  238

Query  337  KNIWASCHRSRPEN  350
            +     C    PE+
Sbjct  239  Q-----CWAYDPED  247



Lambda      K        H        a         alpha
   0.322    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00031694

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  162     2e-48
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            121     3e-32


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 162 bits (413),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 108/248 (44%), Gaps = 46/248 (19%)

Query  153  FEVRKALGKGKFGRVYLAHKQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  212
            +EV + LG G FG VY A  + TG + A+K + K KI++ + +K +  +I+I   L HPN
Sbjct  1    YEVLRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKK-DKNILREIKILKKLNHPN  59

Query  213  VLRLFSHFDDSKRIILILEYAGKGELYKHLQREDRFPEWKSAQYIAQMANALLYLHRKHV  272
            ++RL+  F+D   + L+LEY   G L+  L  +  F E ++   + Q+   L        
Sbjct  60   IVRLYDAFEDKDNLYLVLEYVEGGSLFDLLSEKGAFSEREAKFIMKQILEGL--------  111

Query  273  IHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLDYLPPEMVDPRKCDKPYDQ  332
                                               T  GT  Y+ PE++       PY  
Sbjct  112  ----------------------------ESGSSLTTFVGTPWYMAPEVLG----GNPYGP  139

Query  333  KVDIWSLGVLLYEFLVGRAPFEDTPVMTQRRIAKGDM----TVPSFVSPEAKDLIKKNIW  388
            KVD+WSLG +LYE L G+ PF          +          +PS +S EAKDL+KK + 
Sbjct  140  KVDVWSLGCILYELLTGKPPFPGINGNEIYELIIDQPYAFPELPSNLSEEAKDLLKK-LL  198

Query  389  ASCHRSRP  396
                  R 
Sbjct  199  KKDPSKRL  206


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 121 bits (305),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 110/254 (43%), Gaps = 23/254 (9%)

Query  157  KALGKGKFGRVYLAH----KQSTGFVCALKVLHKSKIQQGRVEKQVAHKIEIQSNLRHPN  212
            + LG+G FG VY        ++T    A+K L +   ++ R +     +  I   L HPN
Sbjct  5    EKLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEERED--FLEEASIMKKLDHPN  62

Query  213  VLRLFSHFDDSKRIILILEYAGKGELYKHLQR-EDRFPEWKSAQYIAQMANALLYLHRKH  271
            +++L       + + ++ EY   G+L   L++ + +           Q+A  + YL  K+
Sbjct  63   IVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKRKLTLKDLLSMALQIAKGMEYLESKN  122

Query  272  VIHRDIKPENILVGIHGELKMSDFGWSVHAPSGRRHTQCGTLD----YLPPEMVDPRKCD  327
             +HRD+   N LV  +  +K+SDFG S        + + G       ++ PE +   K  
Sbjct  123  FVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWMAPESLKDGK--  180

Query  328  KPYDQKVDIWSLGVLLYEFL-VGRAPFED-TPVMTQRRIAKGD-MTVPSFVSPEAKDLIK  384
              +  K D+WS GVLL+E   +G  P+   +       +  G  +  P     E  DL+K
Sbjct  181  --FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDGYRLPQPENCPDELYDLMK  238

Query  385  KNIWASCHRSRPEN  398
            +     C    PE+
Sbjct  239  Q-----CWAYDPED  247



Lambda      K        H        a         alpha
   0.318    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00031695

Length=405


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00031696

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00031697

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  210     4e-63


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 210 bits (538),  Expect = 4e-63, Method: Composition-based stats.
 Identities = 101/424 (24%), Positives = 182/424 (43%), Gaps = 33/424 (8%)

Query  61   FHSYGDIYLSKP---RTITISHPRDVRAIL------ASSEFQKIDVYHGLNDPVMANIVT  111
               YG I+         + +S P  V+ +L       S    +          +   IV 
Sbjct  30   QKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGIVF  89

Query  112  FSDPKLASRRRRQIGPYFNPSYLAKMEELILRCGCRAVADKWGRLIAQQGHGPQKSVKVN  171
             + P+    RR     + +   L   E  +     R + +K  +   + G        ++
Sbjct  90   ANGPRWRQLRRFLTPTFTSFGKL-SFEPRVEEEA-RDLVEKLRKTAGEPG-------VID  140

Query  172  YRHDLQLATFDIMSALAFGRWLDSLKEEGESVAIVEWIMATAVYIGVRINFRLLMVFPF-  230
                L  A  +++ ++ FG    SL++  + + +V+ +        +  +    ++  F 
Sbjct  141  ITDLLFRAALNVICSILFGERFGSLEDP-KFLELVKAV---QELSSLLSSPSPQLLDLFP  196

Query  231  ------SRLVRRWTRAYAEFVQFSKHAVASRKELLAQGCQKPVDLLQAFIDAEDPDSKVK  284
                      R+  RA  +        +  R+E L    + P D L A + A++ +   K
Sbjct  197  ILKYFPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSK  256

Query  285  MTTVEVQAESVGMQLAGSETTAASLTWAVHLFTLYPEYYRIAVDEVRGQFGPNHLITYAD  344
            +T  E++A  + +  AG++TT+++L+WA++    +PE      +E+    G     TY D
Sbjct  257  LTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDD  316

Query  345  CSRLVFLEAFVYEMLRYTPITSSFMPRVSFTKGTTLQGHYIPPGTEIAFNLIAMNNREDV  404
               + +L+A + E LR  P+    +PR   TK T + G+ IP GT +  NL A++   +V
Sbjct  317  LQNMPYLDAVIKETLRLHPVVPLLLPREV-TKDTVIPGYLIPKGTLVIVNLYALHRDPEV  375

Query  405  WEEPERFLPDRFLKDPDLKRSVFA---FSYGTRSCIGRHLAWMEMMTILANLLKDYDWSL  461
            +  PE F P+RFL +    R  FA   F  G R+C+G  LA MEM   LA LL++++  L
Sbjct  376  FPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVEL  435

Query  462  PEDS  465
            P  +
Sbjct  436  PPGT  439



Lambda      K        H        a         alpha
   0.325    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00031698

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  208     3e-62


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 208 bits (532),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 112/441 (25%), Positives = 182/441 (41%), Gaps = 34/441 (8%)

Query  66   TFGDIYLCKPN---TVYLCDPHDACTVL--SSHAFRKTDMYRVFEYEGIPNVST---FTD  117
             +G I+         V L  P     VL      F        F     P +     F +
Sbjct  32   KYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGIVFAN  91

Query  118  PAQAQRRRRQLHPFFNNAYLTQMEPVMLKYGIQALKARWDAQLARHKKVEVNYRFDTQLA  177
              + ++ RR L P F +      EP + +   + L  +          +++        A
Sbjct  92   GPRWRQLRRFLTPTFTSFGKLSFEPRVEEEA-RDLVEKLRKTAGEPGVIDI--TDLLFRA  148

Query  178  MFDITGALVFGREFHALETS-NLVYTKWVNNTLSYMLVSH------YFPWVKRVPLSWLV  230
              ++  +++FG  F +LE    L   K V   LS +L S        FP +K  P     
Sbjct  149  ALNVICSILFGERFGSLEDPKFLELVKAVQE-LSSLLSSPSPQLLDLFPILKYFP-GPHG  206

Query  231  RGLKQSYDDLVAFSQESIAIRQADLQAGRPKPADLLQALLDAEDPDSKAPMTAREVQAES  290
            R LK++   +     + I  R+  L + +  P D L ALL A++ +  + +T  E++A  
Sbjct  207  RKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATV  266

Query  291  IAMLVGGSESTSSVISWVIHFLLLYPEHLQAVVAETRANFPADHTITFNESKANLPYLEA  350
            + +   G+++TSS +SW ++ L  +PE  + +  E         + T+++   N+PYL+A
Sbjct  267  LELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDDL-QNMPYLDA  325

Query  351  CIYETLRCIPTASTSFPRVSDQAIILKGYYIPAGTEIATNKCAAHLHQPS-WQDPDRFYP  409
             I ETLR  P      PR   +  ++ GY IP GT +  N  A H   P  + +P+ F P
Sbjct  326  VIKETLRLHPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNLYALH-RDPEVFPNPEEFDP  384

Query  410  PRFLNQETYHETRRNMLSFAYGTRFCIGRNLAWAVMMVTLANLFKDYEVELPEDSRFGPT  469
             RFL++          L F  G R C+G  LA   M + LA L +++EVELP        
Sbjct  385  ERFLDENGKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPG------  438

Query  470  IVDAAGRPKIMPTKMGVATMP  490
                   P  +    G+   P
Sbjct  439  -----TDPPDIDETPGLLLPP  454



Lambda      K        H        a         alpha
   0.324    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00031699

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460564 pfam02458, Transferase, Transferase family. This famil...  85.2    2e-18


>CDD:460564 pfam02458, Transferase, Transferase family.  This family includes 
a number of transferase enzymes. These include anthranilate 
N-hydroxycinnamoyl/benzoyltransferase that catalyzes the 
first committed reaction of phytoalexin biosynthesis. Deacetylvindoline 
4-O-acetyltransferase EC:2.3.1.107 catalyzes the 
last step in vindoline biosynthesis is also a member of this 
family. The motif HXXXD is probably part of the active site. 
The family also includes trichothecene 3-O-acetyltransferase.
Length=434

 Score = 85.2 bits (211),  Expect = 2e-18, Method: Composition-based stats.
 Identities = 89/482 (18%), Positives = 162/482 (34%), Gaps = 85/482 (18%)

Query  3    SIPLSPFDLQGSFSNIPYAFFYE-NTQSENDFMPFDFLKGSLWASLQRFPILTGRLRARS  61
            ++PLS  DL      +   +FY+ N +   +    + LK SL  +L  F  L GRL+ + 
Sbjct  21   TLPLSNLDLLLPPVIVKACYFYKKNLEFPQE-NVSEKLKTSLSETLVHFYPLAGRLKTQP  79

Query  62   TGHIVVEVDAGNPNQPDIRETLCDSVHWSQLKESSFAWDAWPAGVATVGPVATAAADGE-  120
            +G   +E+   +     +          + ++ S               P       G  
Sbjct  80   SGR--LELSCNDEGADFVEAR-------ADVELSDLKDLEPDDSAENFLPQLAVKNPGHA  130

Query  121  IKLLNIHVMRLAQNSGVILFINIPHYVVDGVGYFAFINHWAETMRMQQQQQEQENEARSR  180
              L  + V +  +  G  L  ++ H + DG     FI  WAE  R ++         R  
Sbjct  131  WPLFAVQVTKF-KCGGFALGCSVSHAICDGYSLGTFICSWAELARGKKPPTVTPIFRREL  189

Query  181  F---------SFDRGIIQRYLPTERAPLDP-LTASIYGQRNLLVDWLAWLSPTTLGGLLS  230
                       FD G  + +  +E    D  +   I             LS + L  L +
Sbjct  190  LYPRPEPPSVPFDPGEERDFPASETTTTDEWVLKKI---------VFEALSISQLKELKT  240

Query  231  KTAAMARGEAHLFRIPRASLDQVHKDVQPYIPASARLSDNDLLVALISKTYIQSQPQPKP  290
            K  + + G+      P    + V                     AL+ +   +++     
Sbjct  241  KANSSSNGK------PVTRFESV--------------------TALLWRCAAKARALD--  272

Query  291  PTGFLSWLRPGQGQPESHCTVRIPCDVRRHL--KVRERYTGNLLLGMMVRTPLAELARPT  348
                          P+    + I  D+R  L  K+   Y GN    +     +   A   
Sbjct  273  --------------PDGPTVLGIAVDIRSRLPPKLPPGYFGNAYSDV----YVKSTAGEV  314

Query  349  SSETLAAAALNVRQSIERVQPGLVAAYHDLIQANPTSHMRPLAFTATRTTTSLVTTSQVR  408
             SE L+     ++++++        + +++     +  M  L +   +       +S  R
Sbjct  315  LSEELSWIVELIKEAVKNAITKEYLS-NEIDWTENSILMANLTYKGKKDGGLFTVSSWRR  373

Query  409  FPMYEADFGSGKPCFVCLTPVFAGSYT-MAAILPTPEGREGGVYVLLTSNVEAMQGIKKN  467
             P YE DFG G P +V   PV          + P+ +  +GGV +++T   EAM   ++ 
Sbjct  374  LPFYEVDFGWGSPVYVV--PVVPSETDNTVLLFPSRDD-DGGVELVVTLPEEAMSKFEEE  430

Query  468  QY  469
              
Sbjct  431  FE  432



Lambda      K        H        a         alpha
   0.321    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00031700

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  232     2e-71


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 232 bits (595),  Expect = 2e-71, Method: Composition-based stats.
 Identities = 112/466 (24%), Positives = 197/466 (42%), Gaps = 39/466 (8%)

Query  45   SILKRVLSDGPQSVQADY-QYYGNIYVHRPNG---VSISHPDDIRTVL--LSPEFRKTKV  98
            ++L+        SV     + YG I+         V +S P+ ++ VL     EF     
Sbjct  12   NLLQLGRKGNLHSVFTKLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPD  71

Query  99   YEMLDIEGHAS----IFTTRDPAQASRRRRQIGPYLNHGYLGRMEGLIMKYSVLAIKRKW  154
                           I     P     RR     + + G L   E  + + +   +++  
Sbjct  72   EPWFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGKL-SFEPRVEEEARDLVEK--  128

Query  155  DRLLEESGGQQVTVNYRDHKQYATFDTIGALAFGREFNALTND-DRTVIRWIEATGLYLG  213
               L ++ G+   ++  D    A  + I ++ FG  F +L +     +++ ++     L 
Sbjct  129  ---LRKTAGEPGVIDITDLLFRAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLS  185

Query  214  IR-----KNFPLLKLWPFSRVLRQYRERYERFIAYSKESVTRRKNLLSTVGERPMDLLQA  268
                     FP+LK +P     R+ +   ++      + +  R+  L +  + P D L A
Sbjct  186  SPSPQLLDLFPILKYFP-GPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDA  244

Query  269  FIDAEDPENPHVKMTADEVMTESIAMQLAGSESTSFVTSWVIHLLTLYPQHLAKVTEEIR  328
             + A++ E    K+T +E+    + +  AG+++TS   SW ++ L  +P+   K+ EEI 
Sbjct  245  LLLAKE-EEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEID  303

Query  329  SQFSPSHLITFAECRDKLPYLEACVYETLRYSPITSGFLPRISYTKGLTIQGHYIPPGVE  388
                     T+ +    +PYL+A + ETLR  P+    LPR   TK   I G+ IP G  
Sbjct  304  EVIGDKRSPTY-DDLQNMPYLDAVIKETLRLHPVVPLLLPREV-TKDTVIPGYLIPKGTL  361

Query  389  IAINLHGAHINKDVWTNPHLYDPTRFLGDDQAKRNVFA---FSYGHRNCIGRNLAMMEIM  445
            + +NL+  H + +V+ NP  +DP RFL ++   R  FA   F  G RNC+G  LA ME+ 
Sbjct  362  VIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERLARMEMK  421

Query  446  IIIANILKEYDIALPEDSVHGPWNVDALGRPRIMPTRSALFTTPKY  491
            + +A +L+ +++ LP  +            P I  T   L     Y
Sbjct  422  LFLATLLQNFEVELPPGT----------DPPDIDETPGLLLPPKPY  457



Lambda      K        H        a         alpha
   0.323    0.139    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00031701

Length=463


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00031702

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00031703

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.145    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00031704

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.145    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00031705

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00031706

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00031707

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00035652

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00031708

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.516    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00031709

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00031710

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00035653

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00035654

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.148    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00031712

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00035655

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00035656

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00031715

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00031714

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00031716

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.148    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00031717

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.148    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00031718

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00035657

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00031719

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00035658

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00035660

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00035659

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00031720

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00031721

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00035661

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00035662

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00035663

Length=21


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.144    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 69323604


Query= TCONS_00035664

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00031722

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00035665

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00031723

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00035666

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00031726

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00035668

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00035667

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00035669

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00031727

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00031728

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00035670

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00031729

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.147    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00031730

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00031732

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00031731

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00031733

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00031734

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00035672

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00035673

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00035674

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00031735

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00031736

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00031737

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00031738

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00035675

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.145    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00031739

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.145    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00031741

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00031740

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00031742

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00031743

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00031744

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00031747

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00031746

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.146    0.503    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00031748

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00035677

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00031749

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00035678

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00031750

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00035679

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00035681

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00035680

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00031751

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00031753

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00035682

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.148    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00031754

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00031755

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00031756

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00031758

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00035684

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00031759

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00035685

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00035686

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00031760

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00035688

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00031761

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00031762

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00031765

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00031766

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00031768

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00035691

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00035692

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00031767

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00035693

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00035694

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00031770

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.148    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00035696

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.148    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00031772

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.151    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00035697

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00031773

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00035698

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00031774

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00031775

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00031778

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.144    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00031776

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00031777

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00035699

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00035700

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.144    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00031779

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00031780

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00031782

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00035701

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00031783

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00035702

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00031786

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00031787

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00031788

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00031789

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.145    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00031791

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00031790

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00031793

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00031794

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00035704

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00031795

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00031796

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00035706

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00031797

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00035707

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00035708

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00031799

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00031800

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00031801

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00031802

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00031803

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00031806

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00031805

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00031804

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00031807

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00035709

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00035710

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00031808

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00031809

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00035713

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00035714

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00035715

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.141    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00031812

Length=266


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00031813

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00031814

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00031815

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00035716

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00031816

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00035717

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00031819

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00031818

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00031817

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00035718

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00031821

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00035719

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00035720

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00035721

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00035723

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00031820

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00035724

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00035725

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00035726

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00031822

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00035727

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00031823

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00035728

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.124    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00031824

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00031826

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00035730

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.122    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00035729

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.122    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00031829

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00031828

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00031831

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00031830

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00031834

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00031833

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00031832

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00035731

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00035732

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00035733

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00035734

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.122    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00031835

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00031837

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00031836

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00035735

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00031840

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00031841

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00031839

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00031838

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00035736

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00035738

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00031842

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00035739

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00031843

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00035740

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00031844

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00031845

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00035741

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00031846

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00031847

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00031848

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00031849

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00035742

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00031850

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00031851

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00031852

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00031853

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00031854

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00035743

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00035744

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00035745

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00031855

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00031856

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00035746

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00031857

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00031858

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.126    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00035747

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.126    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00035748

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.126    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00035749

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.126    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00031860

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.126    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00031861

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.126    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00035751

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.126    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00035750

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.115    0.295    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00031862

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00035752

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00031864

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00031863

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00031865

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00031866

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00035753

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00031867

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00031868

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00031869

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00031870

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00035754

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00031871

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00031872

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00035755

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00031874

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00031875

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00035756

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00031877

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00031876

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00031878

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00035757

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00035758

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00031880

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00031879

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00031882

Length=20


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 66022480


Query= TCONS_00031883

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00031884

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00031885

Length=182


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169080800


Query= TCONS_00031903

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00031889

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00035759

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00031886

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00031888

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.144    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00031887

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00035760

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.144    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00031892

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00031891

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00031890

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00031894

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.128    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00031895

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.144    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00031896

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00035763

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00035762

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00035761

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00035764

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.128    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00035765

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.144    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00031897

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.144    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00031898

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00035766

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00031899

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00031900

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00031901

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.144    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00035768

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.144    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00031902

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00035769

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00035770

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.128    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00035772

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00031904

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00031905

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00035773

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00035774

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.144    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00031906

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00031907

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00031908

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.141    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00031909

Length=224


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00031910

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00035775

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00035776

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00031911

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00031913

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00035777

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00031912

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00031914

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00031915

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00031918

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00031919

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00031921

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00031920

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00031922

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00031924

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00035778

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00031926

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00031923

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00031925

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00031928

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00031927

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00035779

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00031929

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00031930

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00031931

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00035780

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00031932

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00031933

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00031934

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00031935

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00035781

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00031936

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00035782

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00031937

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00031938

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00035783

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00031939

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.135    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00035784

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.121    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00031941

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00035785

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00035786

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00031942

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00035787

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00031943

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00031944

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00035788

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00031946

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00031947

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00031948

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00031949

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00031950

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00035791

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00035792

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00035793

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.131    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00031954

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00031953

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00031952

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00031955

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00031956

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00035796

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00035797

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00031959

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00031960

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00031961

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00035798

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00031962

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00031963

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00031964

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00031965

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00031966

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00031967

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00035799

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00031969

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00031970

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00031971

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00035800

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00035801

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00035802

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.126    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00031972

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00031973

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00031974

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00031975

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.126    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00031976

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.126    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00031977

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.126    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00035803

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00031978

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.126    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00031979

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.126    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00035805

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00035804

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00031980

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00031981

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00031982

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00031985

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00031984

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00031983

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00031986

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00031987

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00031988

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00031989

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00035806

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00031990

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00031991

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00035807

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00035808

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00035809

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00031992

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00031993

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00035810

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00031994

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00035812

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00031997

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00035813

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00035814

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00035815

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00031998

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00031996

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00031999

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00032000

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00032001

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032002

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00032003

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00032004

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00032005

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00032006

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00035817

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00035816

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00035818

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00032007

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00032008

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00035819

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00032009

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00032014

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00035820

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00035821

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00032012

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00032013

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00032023

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00035822

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00035823

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00032017

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00032016

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00032019

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00032018

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00032022

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00035824

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00032024

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00032021

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00032020

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00032026

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00035826

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00032028

Length=288


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00032029

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00032030

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00035828

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00035829

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00032033

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00032031

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00032032

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00032034

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00035830

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00035831

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00035832

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00032035

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00032036

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00032045

Length=308


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00032041

Length=308


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00032039

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00032038

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00032040

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00035833

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00032042

Length=308


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 351968578


Query= TCONS_00032043

Length=273


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.328    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 301491872


Query= TCONS_00035834

Length=298


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00032044

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00035835

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00035837

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.143    0.607    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00032133

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.143    0.607    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00035868

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00032047

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00032049

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032048

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00035838

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.129    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00032050

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.143    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00032051

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.147    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00035839

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00032052

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00032053

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00032054

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00032055

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00032056

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00032059

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00032060

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00035840

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00032061

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00032062

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00032063

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00035841

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.143    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00032070

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00032069

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00032072

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00032073

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00032074

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00032076

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00032075

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00035845

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00032077

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032078

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032079

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00035846

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032080

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00032081

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00032082

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00032084

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00032083

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00035847

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00032085

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00032086

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00032087

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00032089

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00032088

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00032090

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00032091

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00035848

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00035849

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00035850

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00032092

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00032093

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00032094

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00032095

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00032096

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.136    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00032097

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00035851

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00032098

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00032100

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00032099

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00035852

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00032102

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00032101

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00035853

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00035854

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00035855

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00032103

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00032104

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00032105

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00035856

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00035857

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00032107

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00032110

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00035858

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00035859

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00032112

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00032113

Length=26


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.128    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82037150


Query= TCONS_00032115

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032116

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00035860

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00032117

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.110    0.273    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00032118

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00032119

Length=283


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00032120

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00032121

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.125    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00035861

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00035862

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00032123

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00032122

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00035863

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00035864

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.150    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00032124

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00032125

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.150    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00032126

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00032127

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00032128

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00032129

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00032131

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00032130

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00035867

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00032136

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.120    0.322    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032135

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.120    0.322    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032137

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00032138

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00032140

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00032141

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00035870

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00035871

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00032142

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00032144

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00035872

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00032145

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00032146

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032148

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00032147

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032150

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032149

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032151

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032152

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032153

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.126    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00032156

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00035873

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00032157

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00032159

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00035875

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.497    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00032160

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.148    0.510    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00035876

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00035877

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00032161

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00032162

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00032163

Length=268


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00035878

Length=253


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274158192


Query= TCONS_00035880

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00032164

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00035881

Length=246


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00032166

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00035882

Length=230


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00032167

Length=244


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00032168

Length=222


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00032169

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00032170

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00035883

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00035884

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00032171

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00035885

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00032172

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00032173

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00035887

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00032174

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00035888

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00035889

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00032175

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00032178

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00032177

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00032179

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00032180

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00032184

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00032181

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00032183

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00032182

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00035890

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00032186

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00032187

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00032190

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00032188

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00032189

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00032191

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00032192

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00032194

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00032193

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00032195

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00035893

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00035894

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00035895

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00035896

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00032196

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.143    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00032197

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.138    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00032230

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.138    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00032231

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00035916

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.148    0.504    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00032233

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00032232

Length=208


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208896250


Query= TCONS_00035917

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.141    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00035918

Length=206


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00035898

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00032199

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00032200

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032206

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.122    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00035899

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00032201

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.122    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00032202

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.122    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00032203

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00032204

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00032207

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.122    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00032209

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00035901

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00032210

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00032211

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00032212

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00032213

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00035903

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00032214

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00035904

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.117    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00035905

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00035907

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00032217

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.148    0.493    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00032218

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00032219

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.148    0.493    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00032220

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00032221

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00035908

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00032222

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00032223

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00035910

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.144    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00035911

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00035912

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00035913

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00032227

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00035915

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.146    0.507    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00032229

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00032235

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00032236

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00035920

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00032237

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00032238

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00032239

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00032240

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00035921

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00035922

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00032242

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.126    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00032243

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00032244

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.126    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00032241

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00035923

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.126    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00032245

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.126    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00032247

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.126    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00032246

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00035924

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00032248

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00035925

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00032249

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00035926

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00035927

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.142    0.493    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00035928

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.134    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00035929

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00032250

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00032251

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00035930

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00035931

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00032252

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00035932

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00032254

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00035933

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032255

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032256

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032257

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.122    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00032258

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00035934

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00035935

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00035936

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00035937

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032259

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032260

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032261

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00035938

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00032262

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00032263

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00035939

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00035940

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00032264

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00035941

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00035942

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00035943

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00032266

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00035944

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00032367

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00032369

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00032368

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00032371

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00032370

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00036006

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00036008

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00036007

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00036009

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00036010

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00036011

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00032373

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00032375

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00032374

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00032376

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00036012

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00032377

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00036013

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00032379

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00032378

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00036014

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00032381

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00036016

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00036015

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00032382

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00032383

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00032384

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00032385

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00032268

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.147    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00032267

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.146    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00032269

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.147    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00032270

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.146    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00032272

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.146    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00032271

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.147    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00032274

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.147    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00032275

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00032277

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00032278

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.125    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032279

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00035948

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00032280

Length=171


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 153940140


Query= TCONS_00032281

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.132    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00035950

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032284

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032285

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00032283

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00035951

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00032288

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00032292

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00032289

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00032290

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00035952

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00035953

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032293

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00032295

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00032296

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032297

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.147    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00032298

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.147    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00032301

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.147    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00032299

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00032300

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.147    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00032302

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.147    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00032303

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.147    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00035956

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.147    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00035955

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.147    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00035957

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.147    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00035958

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.147    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00035959

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.147    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00032304

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.141    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00032305

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.141    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00032306

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00035962

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00035961

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00035963

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00032309

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032308

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032311

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00032310

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00032312

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032313

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00035964

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00035966

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00032316

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00035967

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00035968

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00035969

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00032318

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00032319

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00032320

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00035970

Length=21


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 69323604


Query= TCONS_00032321

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00032322

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00032323

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00032324

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00035971

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032326

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00035972

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00032327

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00035973

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00035974

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00032334

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00035975

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00032329

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00032330

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00035976

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00032331

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00032332

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00032333

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00035977

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.516    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00035978

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00032335

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00032336

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00032337

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00032338

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00035981

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.149    0.504    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00032339

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.149    0.504    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00035982

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00032340

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00035983

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032343

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032344

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00035985

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00032345

Length=265


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00035986

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00032346

Length=265


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00035987

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00035989

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00035990

Length=282


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00035991

Length=265


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00035992

Length=265


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00032349

Length=265


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00032350

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00035993

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00032351

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00032352

Length=265


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00032353

Length=265


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00035995

Length=265


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00035996

Length=247


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00035997

Length=265


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00032354

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00035998

Length=265


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00035999

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00036000

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00032356

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00036001

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00032357

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00032358

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00032359

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00036002

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00032360

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00032361

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00032362

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00036003

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00032363

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00032366

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00032387

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00032388

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00032389

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00032392

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00032390

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00032391

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00032396

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00032397

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00032395

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00032394

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00032393

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00036019

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00036021

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00032399

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00032401

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00032402

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00032403

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00032404

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00032405

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00036022

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00032406

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.142    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00032407

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00036023

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00032408

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00032412

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036024

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036025

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00032413

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00032414

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00036026

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00032415

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00032416

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00032417

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00032421

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00032422

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00036028

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00032423

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00036029

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.145    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00032425

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032426

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.149    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00032427

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00032428

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00032429

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.119    0.319    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00032431

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00032430

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.121    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00036031

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032432

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00032433

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00032434

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00032435

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00036032

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032436

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032437

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00036033

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032440

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032442

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032441

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032443

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00032445

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00032444

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00036034

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00032446

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00032447

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00032448

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00036035

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032449

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00036036

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032450

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032451

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032452

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032453

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032454

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032456

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00032457

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00032458

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00036038

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00036039

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00032459

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.134    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00032460

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.134    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00032461

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.134    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00036040

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00032463

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00036043

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00036042

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00032464

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00032465

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00032466

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00036044

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00032467

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00032469

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00032468

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00036045

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00036046

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00036047

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00032470

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00032472

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00036049

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00036050

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00032473

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00032475

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00036051

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00032474

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00032476

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00036052

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00036053

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00036054

Length=21


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.106    0.314    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 69323604


Query= TCONS_00032481

Length=21


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.106    0.314    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 69323604


Query= TCONS_00032477

Length=21


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.106    0.314    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 69323604


Query= TCONS_00032478

Length=21


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.106    0.314    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 69323604


Query= TCONS_00032480

Length=21


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.106    0.314    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 69323604


Query= TCONS_00036055

Length=21


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.106    0.314    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 69323604


Query= TCONS_00032482

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00032483

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00032488

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00032487

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00032484

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00032486

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032485

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00036058

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00036057

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032489

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00036059

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00032490

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032491

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00036060

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032493

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032492

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032495

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00032496

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00032498

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00032497

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00032499

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00032501

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00032500

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00032502

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00032503

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00032506

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00032507

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00032508

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00032509

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.150    0.513    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00032510

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.150    0.513    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00036061

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.150    0.513    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00032511

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00036062

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00036063

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00032512

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00032513

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00032514

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00032515

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00032516

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00032517

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00032518

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00036064

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032519

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036065

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00032520

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00036066

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00032521

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00032522

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00032523

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00036068

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00032524

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00036069

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00036070

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00032526

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00032527

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00032529

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00036072

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00032530

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00032531

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00032532

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00036074

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00036075

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00032533

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00032534

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00036078

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00036079

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00032535

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00032538

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032539

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032541

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032540

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032542

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00036080

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00036082

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00036081

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032544

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00036083

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00036084

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00036085

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.144    0.518    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00036086

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.144    0.518    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00036087

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00032545

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00032549

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00032548

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00032551

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00032547

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00032546

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00036088

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00032550

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00032553

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00032552

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00032554

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00032557

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00032559

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00032558

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00032560

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00032562

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00032561

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00036089

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00036090

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00032565

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00032563

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00032564

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.124    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00032566

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00032567

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00032568

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00036094

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00032569

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00036096

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00032571

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00032572

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00032573

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00032574

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00032575

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00036099

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00032577

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.121    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032578

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.121    0.331    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032579

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00032581

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.144    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00032582

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00036101

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00032585

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00032586

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00032587

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00032588

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00036102

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00036103

Length=227


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 236169076


Query= TCONS_00032589

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.124    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00036104

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00032590

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00032591

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00036105

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00032592

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00032593

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00032595

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.529    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00032594

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.144    0.529    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00036107

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00032596

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00032597

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00032600

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00032598

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00032599

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00032601

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00036109

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00036110

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00036111

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00036112

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00032603

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00032604

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00032605

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00032606

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032607

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00032609

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00032608

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.123    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00032610

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00032611

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.119    0.328    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00036113

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00032612

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00036114

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00032613

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.142    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00032619

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00032616

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00032614

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00032615

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00032617

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00032618

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00032620

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00032621

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00032622

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00032623

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00036115

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00032624

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00036116

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00036117

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00036118

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00032627

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00032625

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00036119

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00036120

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00036121

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00036122

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00032626

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00032628

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00032629

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00032631

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00032630

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00036124

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00032633

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00032632

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00036125

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00032635

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00036126

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00032634

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00032636

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00032638

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00032637

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00032639

Length=470


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00036128

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00036129

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00036127

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00032642

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00036130

Length=470


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00036134

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00036133

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00036132

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00036131

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00032640

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00036135

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00032641

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00032643

Length=470


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00036136

Length=470


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 582807520


Query= TCONS_00032644

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00032645

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00036137

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00032646

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00032647

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00032649

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00032650

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.140    0.514    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00036140

Length=186


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00032654

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00032655

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00036141

Length=340


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00032656

Length=340


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00036142

Length=340


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00032657

Length=327


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382228320


Query= TCONS_00032658

Length=340


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 396390960


Query= TCONS_00036143

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00032660

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00036144

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00032661

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00036145

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.135    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00032665

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00032662

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00032663

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00032664

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00036147

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00032666

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00036148

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00032667

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00032668

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00036149

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00032669

Length=200


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 195526890


Query= TCONS_00032670

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.124    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00032671

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00032672

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00032673

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00032674

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00032675

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00032676

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00032677

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00036151

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00036152

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00036153

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00036155

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00036154

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00036156

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00032682

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00036157

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00036158

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00036159

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00036160

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00036161

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00036162

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00032685

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00032686

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00032687

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00032688

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00036163

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00032690

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00032691

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00032692

Length=217


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00032693

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036165

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00032695

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00032696

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00032697

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00036166

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00036167

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00032698

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00032699

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00032700

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00036168

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00032701

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00032702

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00036169

Length=22


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.136    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 72624728


Query= TCONS_00036170

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00032704

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00032703

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00032706

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00032707

Length=242


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.141    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 256207358


Query= TCONS_00032708

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00032710

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00032709

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00032711

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00036175

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00036177

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00036178

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00036179

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00036180

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00036181

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00036182

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00032712

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00032713

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00032714

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00036183

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00036184

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00032716

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00036185

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00032722

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00032726

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00032727

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00032729

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032728

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032730

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00036188

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032732

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032731

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032733

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032734

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.146    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00036189

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00032736

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00032737

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00032738

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00032739

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00036190

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00032741

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00032743

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00032742

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00032745

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00032744

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00032746

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00032747

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00036191

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00032748

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00036192

Length=22


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.122    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 72624728


Query= TCONS_00032749

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00032750

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00032751

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00032752

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00032753

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00036193

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00032755

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00036194

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00036195

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00032754

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00032756

Length=252


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00032760

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00032758

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00032759

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.130    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00032761

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00032762

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00032764

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00032763

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00032765

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00036197

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00036199

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00032766

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00036200

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00036201

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.115    0.294    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00036202

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00032767

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00032768

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00036203

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00032770

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00036204

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00032769

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00032771

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00032772

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00036205

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00036206

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.114    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00032774

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.149    0.525    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00032776

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00032777

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00032778

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00032779

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00036208

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00036207

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00036209

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00032780

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00032781

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00032782

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00036210

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00032783

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.144    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00032784

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.144    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00032786

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.144    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00032787

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00036211

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00032789

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00032788

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00032790

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00036212

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00032791

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00032792

Length=398


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 479982678


Query= TCONS_00032793

Length=196


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00036215

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00032794

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032795

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032796

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00036216

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032797

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032798

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00036217

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00032800

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00032801

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00032802

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.121    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00036218

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00036219

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032808

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00032807

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00032805

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00032804

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00032810

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032809

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032812

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00032813

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00036221

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00036220

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032814

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00036222

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032817

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032816

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032818

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032819

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032820

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032821

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032822

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032823

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032824

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032825

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00036224

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00036225

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00032828

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00036226

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00032829

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00032830

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00032831

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00032832

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00036227

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00032833

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00032835

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00032834

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00036229

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00036228

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00036230

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00036231

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00032837

Length=248


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00032838

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00032839

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00032840

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00036232

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00036233

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00032841

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00036234

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00036235

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00032842

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00032843

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00032847

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00032846

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00036236

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00032844

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00032845

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00032848

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00032851

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00032850

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00032852

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00032853

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00032854

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00032855

Length=535


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00036237

Length=535


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00036238

Length=535


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00032856

Length=535


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.124    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00036239

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00032857

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00036240

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00036241

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00032860

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00032858

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00032859

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00032861

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00032862

Length=422


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00032864

Length=422


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00036243

Length=422


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00032865

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00036245

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00036246

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00032866

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.122    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00032867

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00036248

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00032869

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00032870

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.118    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00036249

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00036250

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00032874

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00036251

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00036252

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00036253

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00032872

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00032873

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00032875

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00032871

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00032876

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00032925

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00036282

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00036283

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00032926

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00036284

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00032929

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00032927

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00036285

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00032930

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00032928

Length=22


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.121    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 72624728


Query= TCONS_00032931

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032932

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032933

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032877

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00032878

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00036255

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00036254

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00032879

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00032880

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00036256

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00036257

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00032881

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00036258

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00032883

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00036260

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00032885

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00036261

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00032887

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00032886

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00036262

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00032888

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00032889

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00032890

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00036263

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00032891

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00032893

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00032892

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00032894

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00032895

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00032896

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00036265

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00032899

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00032898

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00032900

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00036266

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00032901

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00032902

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00032903

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00032904

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00032905

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036267

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036269

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036268

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036271

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036272

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00032908

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00032907

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036273

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00032909

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00032910

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036274

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00036275

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00032912

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00032913

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00032914

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00032915

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00036276

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00032916

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00032918

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00036279

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00032920

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00032921

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00032922

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00032923

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00036280

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00032924

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00032934

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00032935

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036286

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00032936

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036287

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036288

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00032938

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036289

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00032939

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00032940

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00036290

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.339    0.143    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00032943

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00036291

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00032946

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00032947

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00036293

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00032948

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00032949

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00032950

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00032951

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00032952

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00032953

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.155    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00032954

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.155    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00032955

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.155    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00036294

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.155    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00032956

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.155    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00032957

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00032958

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00032959

Length=23


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.148    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 75925852


Query= TCONS_00032960

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00032961

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.133    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00036297

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00032964

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00036299

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00032966

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.133    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00032962

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.133    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00032963

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.133    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00036300

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.133    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00032965

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.133    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00036301

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00036302

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00032967

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00036303

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00032969

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00032968

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00036304

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00036305

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00032971

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00032972

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00032973

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00036307

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00036308

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00032974

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00032975

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00032976

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00032978

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00036309

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00032980

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.120    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00036310

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00032982

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00032983

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.123    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00032984

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00032985

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00032986

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00032987

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00032988

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00036311

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00032990

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00032991

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032992

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00032996

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00032995

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032994

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032993

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032997

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00036313

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00033000

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032999

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00033001

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00033002

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00036314

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00032998

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00033003

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00036315

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00036316

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00036317

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00033004

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00033006

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00033007

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00033008

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.521    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00036319

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00036320

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00033010

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00036321

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00033011

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00036322

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00033013

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00033012

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00036323

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.135    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00036324

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00033016

Length=170


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 152229694


Query= TCONS_00033017

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.146    0.524    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00036325

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.146    0.524    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00033019

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.146    0.524    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00033018

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.146    0.524    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00033020

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.121    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00033021

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.142    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00033023

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.142    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00033024

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.142    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00036326

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00033022

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00036327

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.142    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00033025

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.142    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00033027

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00033026

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00033029

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00033028

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00036328

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00036330

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.339    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00033030

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00036331

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00033031

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00033032

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00033033

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00036332

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00036333

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.120    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00036334

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.120    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00033034

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.120    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00033036

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.120    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00033038

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00033039

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00033040

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00033041

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00033042

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00033043

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00033044

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00033045

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00033046

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00033047

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00036335

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00036336

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033048

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033050

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00033049

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00036338

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00033051

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00036339

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00033053

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00036341

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00033052

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00033054

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.145    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00033055

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.145    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00036342

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00033056

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00036343

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00033057

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00033058

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00033059

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.332    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00033060

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.127    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00033061

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00033062

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00033064

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00033063

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00036345

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00036346

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00036347

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00033065

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00033066

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00033067

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.140    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00033069

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00033068

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00033070

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00033071

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00036348

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00033073

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00033074

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00036349

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00033076

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00033075

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00033077

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00036351

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00036352

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00036350

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00036353

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00036354

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00033079

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00033080

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00033081

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00033082

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00033083

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.122    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00033084

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00033086

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00033087

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00033088

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00036357

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00036358

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00033089

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00036359

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00036360

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00033091

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00033094

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.141    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00033093

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00033096

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.121    0.318    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00033095

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.121    0.318    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00036361

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00033097

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.120    0.314    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00036363

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00033101

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00033099

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00033100

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00033102

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00033103

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00036364

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00033104

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00033105

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00033106

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033107

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00033108

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00036365

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00036366

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00036367

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00033109

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.504    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00033110

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00036369

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.343    0.149    0.537    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00033111

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00033113

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00033114

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00036370

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.493    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00036371

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.493    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00033115

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00033116

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00036372

Length=173


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.509    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00036373

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00033118

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036374

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00033117

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036375

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00033119

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00033120

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00033121

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036377

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00033122

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036378

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00036379

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00033123

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00036380

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00036381

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00033124

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00033126

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00033125

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00033127

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.125    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00033129

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00033128

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00033130

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00036382

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00036383

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00036384

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00033132

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00033133

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00036385

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00033135

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00036386

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00033134

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00033136

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.146    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00033137

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.146    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00036387

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.146    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00033138

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00033139

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00033141

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00033140

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.138    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00033142

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00033143

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00033144

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00033145

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00036388

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00033146

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00036389

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.119    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00036390

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00033147

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00033149

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.136    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00033150

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.119    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00033152

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.119    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00033151

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00036392

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00036393

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.135    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00036394

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.119    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00033153

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00033156

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00033158

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00033157

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00033159

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00033160

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00036395

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.118    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00036396

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00036397

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00033161

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00036399

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.117    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00036400

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.117    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00033172

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.118    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00033173

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00033174

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.118    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00033183

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00036404

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.133    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00033185

Length=215


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00033186

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00033187

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00033162

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.131    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00033165

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00033164

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00036398

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00033166

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00033168

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.151    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00033170

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.151    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00033167

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.151    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00033169

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.138    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00033175

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00033178

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00033179

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00033180

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00036402

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00033181

Length=378


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00033182

Length=378


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448915838


Query= TCONS_00033188

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00036405

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00033190

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00033194

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.123    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00033195

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00036410

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00036411

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00036412

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00033203

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00033201

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.144    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00033202

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00036413

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00033204

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00033206

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00036414

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00033208

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00036415

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00036416

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00036417

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00033209

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00033210

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00033211

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.555    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00036419

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.555    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00033212

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.555    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00033214

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00033213

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00033215

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.555    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00033216

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.555    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00033217

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.559    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00036420

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00036421

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00036422

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00036423

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00033218

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033219

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033220

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.494    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00036447

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00033263

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00036448

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.125    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00033264

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00033266

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00036450

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00036449

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00033265

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00033267

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00036451

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00033268

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00033269

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00036452

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00033270

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00033271

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.127    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00033273

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.149    0.588    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00033274

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00033282

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00033276

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00033275

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00033279

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00033278

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00033277

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00033281

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00033280

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00033283

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00036453

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00033284

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00033285

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00033286

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00033287

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00033288

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00033289

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.527    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00036454

Length=25


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.139    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82528100


Query= TCONS_00033290

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.519    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00036455

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00036457

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00036456

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.145    0.519    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00036458

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00033291

Length=25


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.139    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82528100


Query= TCONS_00036459

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00036461

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.113    0.279    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00036462

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00033293

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00033295

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00033294

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00036463

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00036464

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00033297

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00033221

Length=329


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.489    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 385413556


Query= TCONS_00033222

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00033224

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00033223

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.339    0.151    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033225

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.339    0.151    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033226

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.138    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00036425

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00036426

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.133    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00033227

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.133    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00033228

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00033230

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00033231

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00036427

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00036428

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.124    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00033234

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00033235

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.142    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00033236

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.142    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00033238

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.126    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00036429

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.126    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00033239

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00033242

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00033241

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00033240

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00033243

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.122    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033244

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.122    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033245

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.122    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033246

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.122    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033247

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.122    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00036432

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.122    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00036433

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00033248

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.122    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00036434

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.122    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00036436

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.122    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00036437

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.122    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033249

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.302    0.122    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033250

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00033251

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00033254

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00036439

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00033256

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00033257

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00036440

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00033258

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00036441

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00036442

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00033259

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00036443

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00033260

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00036444

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.145    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033261

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00036446

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00033262

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00033298

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036466

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036465

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033299

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033300

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00036467

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00033302

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00033301

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00036468

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00033303

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00033305

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00036469

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00033306

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00036470

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00036471

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00036472

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00036473

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00036474

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033310

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033313

Length=22


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 72624728


Query= TCONS_00033312

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00033314

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00033316

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00033315

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00033317

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00033318

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00033319

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00033320

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00036476

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00033321

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00033323

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00033324

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.142    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00036477

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.137    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00036478

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00036479

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00036480

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033329

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00033325

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00033326

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036482

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00033328

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00033327

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036483

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036484

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.137    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00033330

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00033331

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00036485

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00033332

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00033333

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00036489

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00033335

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00033336

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00033334

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00036490

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00036491

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00033337

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00033338

Length=22


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 72624728


Query= TCONS_00036492

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00036493

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00033346

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00036494

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033340

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033344

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033343

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033342

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033341

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033345

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033347

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033348

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00033349

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00033350

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00036496

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00036498

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00036497

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00033351

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00036499

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00033352

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.141    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00033353

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033354

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00036501

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00036502

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00033355

Length=168


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148808802


Query= TCONS_00033356

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00033357

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00033358

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00036503

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00033359

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00036504

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.145    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00033360

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00036505

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00036506

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00036507

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00033361

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00033362

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00033364

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00033363

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00033404

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00033399

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00033400

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00033402

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00036530

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00033403

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00033405

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033408

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033407

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00033406

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00036531

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00033412

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00033413

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00036532

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00033414

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.119    0.323    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00033415

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00033417

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00036533

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00033418

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00036534

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00033422

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00036536

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00036537

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00033424

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00033423

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00036538

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036539

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00033426

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036540

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036541

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00036542

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00036544

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00036543

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00033427

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00033428

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00033429

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00033430

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033431

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00033432

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00033433

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00033434

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00036546

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00036547

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00033365

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.488    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00036508

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00033366

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033367

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033368

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.141    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00033369

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00036509

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00033371

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00033372

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00036510

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00036511

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00036512

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.143    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00033373

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00036513

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033376

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00033375

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00036514

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00033377

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00036516

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00033378

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00036517

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00036518

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00033381

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00033380

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00033379

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00033382

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00036519

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00033384

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00036520

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00033385

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00036521

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00033386

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00036522

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00033387

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00036523

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00033388

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.141    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00033391

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00033390

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.140    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00036524

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033392

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00036525

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.125    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00033393

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00036526

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00033394

Length=257


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00033395

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00033396

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00036527

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00033397

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00036528

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00033398

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.140    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00036529

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00033419

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00033436

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00033437

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.124    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00033438

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00036550

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00033440

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00033439

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00033442

Length=180


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00033444

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00033445

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00033446

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00033447

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00033448

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00036551

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00033452

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00036552

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00033453

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00036553

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00036554

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00033454

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00033455

Length=25


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82528100


Query= TCONS_00033456

Length=25


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82528100


Query= TCONS_00033458

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00033459

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00033460

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00033461

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00033462

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00036555

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00033457

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00036556

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.122    0.346    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00033463

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00036557

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00033465

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00036558

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00033468

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00033466

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00036559

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00033467

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.137    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00036560

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00036561

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00036562

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00036563

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00033469

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.141    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00033470

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00036564

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00033473

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00036565

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00033471

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00033472

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00036566

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00036567

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.141    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00036569

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00036570

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00036571

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033476

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00033475

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00033478

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036573

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036572

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036575

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036576

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036574

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033479

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00033482

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033481

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033480

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033484

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036578

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036577

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036579

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033485

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033486

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033487

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036581

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00036582

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00033489

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00033488

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036583

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036584

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033492

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033491

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033490

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033493

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033494

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036586

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036587

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036585

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036589

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036588

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036590

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036591

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00033497

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00033498

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00033499

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00033500

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00033501

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00033502

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00033503

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00033504

Length=402


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00033505

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00033506

Length=402


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00036592

Length=285


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00033507

Length=402


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00036593

Length=402


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00033508

Length=402


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00033509

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00036594

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00033510

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00033511

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00033512

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00033515

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00033514

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00033513

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00036595

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00036596

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00033516

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00036598

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00033517

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00036600

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00036599

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00036601

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00036602

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00033518

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00036603

Length=448


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00033519

Length=448


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00036604

Length=448


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00036605

Length=448


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00033525

Length=448


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00033522

Length=448


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00033521

Length=448


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00033524

Length=448


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00033526

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00033523

Length=448


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00036606

Length=448


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00033527

Length=448


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00033528

Length=448


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00036607

Length=448


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 549066032


Query= TCONS_00033530

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00033534

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00036609

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00036608

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00036610

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00033531

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00033533

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00033532

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00036611

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00033535

Length=179


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167623708


Query= TCONS_00036612

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00036614

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00036613

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00036615

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.144    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00033537

Length=244


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00033538

Length=244


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00033539

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00033540

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00036616

Length=172


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00033541

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00036617

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00036618

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.125    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00036619

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.148    0.508    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00033543

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00033542

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00033544

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00036620

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00033545

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00033546

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00033547

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.142    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00033548

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00033549

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00033550

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.118    0.310    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00033551

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00036622

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00033553

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00033554

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00033555

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00033556

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00033557

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00033558

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00036623

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00033560

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00036624

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00033559

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00036625

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00033561

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00036626

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00033562

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00036627

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00033563

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00036629

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00033565

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00033566

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00033567

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00036630

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00033568

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00036631

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033569

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033570

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00036632

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00036633

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033572

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00033573

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00036634

Length=145


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.124    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 115481652


Query= TCONS_00033574

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.138    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00036635

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00036636

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00036638

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00033576

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00036639

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.124    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00036640

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.118    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00033578

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00033579

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00036641

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00033580

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00033581

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.117    0.281    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00033584

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.145    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00033582

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00033583

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00036642

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00033585

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.144    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00033586

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00036643

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00036644

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00033588

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00036645

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033589

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00036646

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00033590

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.153    0.555    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00036648

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00036647

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00033591

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00033592

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00033593

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.143    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00033594

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00036650

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.143    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00036649

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.143    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00036651

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.143    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00033596

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.143    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00036652

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.143    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00036653

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00036654

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00033598

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00036655

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00036656

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00033599

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00036657

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00036658

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00033600

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00033602

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00033603

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00033604

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00036659

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.130    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00036660

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00033605

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00033606

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00036662

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00036663

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00036664

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.134    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00033609

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00033608

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00033607

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.145    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00033610

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00033611

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00036665

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00033612

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033613

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00036666

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00036667

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00036668

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033616

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00033617

Length=192


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00033618

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00033619

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00033620

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.144    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00033621

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00033622

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00033623

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.126    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00033624

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.126    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00036670

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.139    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00036671

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.153    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00033625

Length=333


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00036672

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00036673

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00036674

Length=326


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00033626

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00033627

Length=326


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00036675

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00033628

Length=332


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00033659

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00033660

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00036700

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00036699

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00036701

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00033662

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00033663

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00036702

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00033664

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00033665

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00033666

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00033667

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00036703

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00036704

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.135    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00036705

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00033668

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00033669

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00033670

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00036706

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00033671

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00033629

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00033630

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00033631

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00033632

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00036676

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00033633

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00033634

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00033635

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.141    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00033636

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00033637

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00033638

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00033639

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00033642

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.120    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00036682

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00036683

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.123    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00033644

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00036685

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.141    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00036687

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00036688

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00036689

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.147    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00036690

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00033647

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00033648

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.112    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00036691

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.112    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033649

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.112    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00036692

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.112    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00036693

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033650

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.148    0.492    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00036694

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00036695

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00036696

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00033653

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033651

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00036698

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00033652

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033655

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00033656

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.143    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033657

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00033658

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00033674

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00033675

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00036709

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00033676

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00036711

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00033677

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00033679

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00033678

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00036712

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00036713

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00033680

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00036714

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00033681

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00033682

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.142    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00033683

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00036715

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00036716

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.132    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00036717

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00033685

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00033686

Length=29


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.133    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80564300


Query= TCONS_00036718

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033693

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036719

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00036720

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036721

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00033687

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00033688

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00033689

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00033690

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00036722

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.125    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00033691

Length=183


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.340    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00033692

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.330    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00036723

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00036724

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033694

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00033695

Length=177


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 164202816


Query= TCONS_00033696

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00033697

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.339    0.152    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00033698

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.139    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00033700

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00033699

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00033701

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.122    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00033702

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00033703

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00033704

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00033705

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00033706

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033707

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00036726

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033708

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00033709

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00033710

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00033711

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00033712

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00033713

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00033714

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00036727

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00033715

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00036729

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00036728

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00036730

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00033716

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00033717

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00033718

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00036731

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00033719

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00033720

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00033721

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00036732

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00033722

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00033723

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00033724

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00033725

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00033733

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00033726

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00033727

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00036733

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00033728

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00033730

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00036734

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00036735

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00033731

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00033732

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00033734

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00033735

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.125    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00033736

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033737

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00033740

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00036737

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00036738

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00036739

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00033742

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00033741

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00036740

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00036741

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00033743

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00033744

Length=221


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00036742

Length=207


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00033745

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.124    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00033746

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00033747

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00033748

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00036743

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00033749

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00036744

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00033750

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00036745

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.141    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00033751

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00033752

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00033753

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00033754

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00036746

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00036747

Length=70


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81756160


Query= TCONS_00036748

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.113    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00033755

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.144    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00033756

Length=111


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81736284


Query= TCONS_00036750

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00036751

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00033757

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00033758

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00033759

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.535    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00033760

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.535    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00033761

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00036752

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.112    0.306    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00036753

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.112    0.306    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00033762

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.112    0.306    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00033763

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.112    0.306    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00036755

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.112    0.306    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00033764

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.112    0.306    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00033765

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.305    0.112    0.306    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00036756

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.140    0.481    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00033766

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00036757

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.122    0.335    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00036758

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00036759

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00036760

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00033767

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00033768

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00033769

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00033770

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00036761

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00036762

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.120    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00036763

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.141    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00033771

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00036764

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00033773

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00036765

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00036766

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00033776

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00033774

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00033775

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00036768

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00036767

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00036769

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00036770

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00033777

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036771

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00033779

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00036772

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00033780

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00033781

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00033782

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00033783

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00036773

Length=166


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145387910


Query= TCONS_00036774

Length=98


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.149    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80668072


Query= TCONS_00033784

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00036775

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00033785

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033786

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033787

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00033788

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033789

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00036776

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00033791

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00033790

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00033792

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00036777

Length=35


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81233932


Query= TCONS_00036778

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00033795

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00033794

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00033793

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00033796

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00033798

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00033799

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00033800

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00033801

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00033802

Length=144


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 113731930


Query= TCONS_00036779

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00036780

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00036781

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00033803

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00033806

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00033807

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00036785

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00033810

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00033809

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00033808

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00036788

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00033811

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00036789

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00036790

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00033812

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00033813

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00036791

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00036792

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00033815

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00033814

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00033816

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00033817

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00033822

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00033818

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00033819

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00033820

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00033821

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00036793

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00036794

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00033823

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00033826

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00033827

Length=92


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82178258


Query= TCONS_00033828

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00036796

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00036797

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033830

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033831

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00033832

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00033825

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00036798

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00033833

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033834

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.124    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00033835

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.490    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00036799

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00033839

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00036802

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00036801

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033837

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033838

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00033840

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00033841

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00033843

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00036804

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00036803

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00036805

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00033844

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00036806

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00033845

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033847

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033848

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00036807

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033849

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033850

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033851

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00033852

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00033853

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00033854

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00033855

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.137    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00033857

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00036808

Length=23


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 75925852


Query= TCONS_00033858

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00033859

Length=281


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00036809

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00033860

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00033861

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00036810

Length=28


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81055250


Query= TCONS_00033862

Length=270


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00033863

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00036811

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00033864

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00033865

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00033866

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00033868

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00036812

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00033869

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00036813

Length=123


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85005892


Query= TCONS_00033871

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00036815

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00036814

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00036816

Length=27


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.126    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81546200


Query= TCONS_00036817

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00033874

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00033875

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.136    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00033876

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00036818

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00033877

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.123    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00036819

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.121    0.312    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00033879

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00033880

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00033881

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.122    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00036820

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00036821

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00036822

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00036823

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00033886

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.145    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00036825

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00033889

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00033888

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00033887

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.329    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036826

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00036827

Length=160


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00033891

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00033890

Length=162


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.128    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 141866888


Query= TCONS_00036828

Length=143


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.342    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111982208


Query= TCONS_00036830

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00036831

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00036829

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00036832

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00036833

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00033892

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00036835

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00036834

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.129    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00033893

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00033894

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.125    0.338    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00036836

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00033895

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00033896

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00033898

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00033899

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00033900

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.134    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00033901

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00033902

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00036838

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00036839

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00033903

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.129    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00036841

Length=195


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.129    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 191061304


Query= TCONS_00033906

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00033907

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00033908

Length=95


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00033909

Length=62


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83462726


Query= TCONS_00033910

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00033911

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00033912

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00033913

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00036842

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00036843

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00033914

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00036844

Length=193


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 187679688


Query= TCONS_00033916

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00033917

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00036845

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00033918

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00036846

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00033970

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.147    0.535    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00033971

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.147    0.535    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00033972

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00033973

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.124    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00036879

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00033974

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00033975

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00036880

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.126    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00033976

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00033919

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00036847

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00033922

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00033921

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00033920

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00033923

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.125    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00036849

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.125    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00033924

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.125    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00033925

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.125    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00036850

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.125    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00033926

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.125    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00033927

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.125    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00036851

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.125    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00033928

Length=155


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.125    0.349    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00033930

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.144    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00033931

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00036854

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00036855

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00036857

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00036856

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00036859

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00036858

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00033935

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00033933

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00033934

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00033936

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00033937

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00036862

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00036861

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00033939

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00033940

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00036863

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.122    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00036864

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00033941

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00033942

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00033943

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00033945

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.339    0.151    0.499    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00036865

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00036867

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00033947

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.339    0.151    0.499    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033949

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036869

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.138    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00036870

Length=141


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 111469680


Query= TCONS_00033950

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00033951

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036871

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036872

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00036873

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.145    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00036874

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.145    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00033954

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.132    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00033953

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.145    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00033955

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.145    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00033957

Length=136


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.130    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102622880


Query= TCONS_00033958

Length=212


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00033959

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00033960

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00036875

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00033962

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00036876

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00033963

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036878

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036877

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00033964

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00033966

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033965

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033967

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033968

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.140    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00033969

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.353    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00036882

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00036883

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033978

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033977

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033979

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00036884

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00036885

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033980

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00033982

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033983

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033984

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033985

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00036888

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00036887

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00036889

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033987

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033986

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00036890

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033989

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033988

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00036891

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033990

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00036892

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00036893

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033991

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033992

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00033993

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00033994

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00033995

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00033997

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00033996

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.138    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00033999

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00036894

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00034000

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00036896

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00036895

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00034002

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00034003

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00034005

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00034006

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00036898

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00034009

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00034011

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00034008

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00034010

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00034012

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00036899

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00034021

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00034015

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00034014

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00034013

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00036900

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00036901

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00034016

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00034018

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00034017

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00036902

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00034020

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00034019

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00036903

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00036904

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00034022

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00034023

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00036905

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00036906

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00034024

Length=24


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.116    0.296    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 79226976


Query= TCONS_00034025

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00034026

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00034027

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00034028

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00034032

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00034031

Length=303


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.134    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00034030

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00034033

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00034034

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00036908

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00034035

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.139    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00034036

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00036910

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00036909

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00036911

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00034037

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.135    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00034038

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00036913

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00036912

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00034039

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00034040

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00034041

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00034042

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00036914

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00034043

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00036916

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.129    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00034045

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00034046

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00034047

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00034048

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00036918

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00036917

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00034049

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00034050

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00036919

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.138    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00034065

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.120    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00034066

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.120    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00034067

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00036927

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00034068

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00036928

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00034051

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00034052

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00036920

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036921

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00036922

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00034053

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00034054

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00034055

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00034056

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00034057

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00036923

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00036924

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00034058

Length=31


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.143    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83276284


Query= TCONS_00034059

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00034061

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00034062

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.133    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00034063

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00034069

Length=332


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390191410


Query= TCONS_00036930

Length=306


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00034071

Length=330


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00034072

Length=306


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 348783342


Query= TCONS_00034074

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00034075

Length=139


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.126    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 107930960


Query= TCONS_00036931

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00034076

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00036932

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.123    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00034077

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00034078

Length=283


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00036933

Length=199


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 193855720


Query= TCONS_00036934

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00034080

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00034082

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00034081

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00034083

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00034084

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00036937

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00036936

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00036938

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00036939

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00034085

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00034086

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00034088

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00034089

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00034091

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00034092

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00034093

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00034094

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00034090

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.124    0.324    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00034095

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00034096

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00034097

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00034098

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00034099

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00034100

Length=213


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 217252100


Query= TCONS_00036943

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00034102

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00036944

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00034103

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00034104

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00036945

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.141    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00034101

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00034105

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00034106

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00036947

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00034107

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.126    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00036948

Length=44


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83633648


Query= TCONS_00034108

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00034110

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00034111

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00034112

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.155    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00036949

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00036950

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00036951

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00036952

Length=36


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.119    0.322    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80723344


Query= TCONS_00036953

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00036954

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00036955

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00036956

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.125    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00034114

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00034113

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00034115

Length=57


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83126940


Query= TCONS_00034116

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00036957

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00034117

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00034118

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00034119

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00034121

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00034120

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00036958

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00036959

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00036960

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00036961

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00036962

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00036964

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00034124

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00034125

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00034126

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00034127

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.148    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00036965

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00036966

Length=121


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81388620


Query= TCONS_00036967

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.128    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00034128

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.148    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00034130

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.148    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00034129

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.148    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00036968

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.145    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00034131

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.145    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00034132

Length=153


***** No hits found *****



Lambda      K        H        a         alpha
   0.338    0.148    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126296132


Query= TCONS_00036969

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.336    0.145    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00034133

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00034134

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.128    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00034135

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00036970

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.128    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00034136

Length=69


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82384576


Query= TCONS_00034138

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00034137

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00034139

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00034140

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.121    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00034141

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00036974

Length=113


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82837952


Query= TCONS_00036975

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036976

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00036977

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00034142

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00036978

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00036980

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036979

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00034144

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00036981

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.132    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00034146

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.145    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00036982

Length=43


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80646732


Query= TCONS_00034148

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.472    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00034150

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00034149

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00034152

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00034151

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00034153

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00036984

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00034154

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00036985

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00036986

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.147    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00036987

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.335    0.147    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00036988

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00034157

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00034156

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00036989

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00036991

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00036990

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00034158

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00034159

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00036992

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00034160

Length=77


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.134    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83527460


Query= TCONS_00034161

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.145    0.497    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00036993

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00034163

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00034162

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00034167

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00036996

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00034169

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00034170

Length=114


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81993518


Query= TCONS_00036997

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00034172

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00034173

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00034174

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.131    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00034175

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00034177

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00036998

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00034178

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00037000

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00036999

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00037001

Length=59


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81948660


Query= TCONS_00037002

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.142    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00034180

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.337    0.142    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00037004

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00034181

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00034182

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00034183

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00034184

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00034185

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00034186

Length=52


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82634050


Query= TCONS_00034187

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.344    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00034192

Length=49


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80884328


Query= TCONS_00037005

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00034199

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00034193

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00037006

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00034194

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00034195

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00034196

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00034197

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00034201

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00034200

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00034198

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00037007

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00034203

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.137    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00034204

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.146    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00034205

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.139    0.531    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00034207

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.140    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00037008

Length=349


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00037009

Length=349


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00034209

Length=349


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00034210

Length=349


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00037010

Length=335


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00037011

Length=349


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00034211

Length=349


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00037012

Length=349


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00037014

Length=349


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00037016

Length=349


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00037018

Length=349


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00037017

Length=349


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00037015

Length=335


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00037013

Length=349


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00034213

Length=335


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00034212

Length=335


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388526060


Query= TCONS_00034215

Length=349


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00034217

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00034216

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00037020

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00034218

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00034221

Length=126


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.142    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00034222

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.123    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00037021

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.123    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00034223

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.145    0.513    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00037022

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.123    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00037023

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0691    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00037024

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.131    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00037025

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00034226

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.136    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00034227

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.127    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00034230

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00034228

Length=102


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83342720


Query= TCONS_00034229

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00037027

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00034231

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.132    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00034233

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00034234

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00037028

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00034235

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00034236

Length=68


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.131    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83012992


Query= TCONS_00034239

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.142    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00034240

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00034241

Length=47


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81984056


Query= TCONS_00034242

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.132    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00034243

Length=54


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00037029

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00034244

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00037030

Length=124


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00034245

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00037031

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00037032

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00034251

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00034246

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00037033

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00034248

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00037034

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00034247

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00034249

Length=118


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81308128


Query= TCONS_00034250

Length=112


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.142    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80911488


Query= TCONS_00034252

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00034253

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00034254

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00034255

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00034256

Length=103


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.131    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82557200


Query= TCONS_00034257

Length=133


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.126    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97314800


Query= TCONS_00037037

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00034259

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00034260

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00034261

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00037038

Length=26


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.147    0.486    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82037150


Query= TCONS_00037039

Length=25


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.141    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82528100


Query= TCONS_00037040

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00037042

Length=46


***** No hits found *****



Lambda      K        H        a         alpha
   0.334    0.139    0.513    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82533920


Query= TCONS_00037043

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00037044

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.129    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00034262

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00037046

Length=135


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.131    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00037047

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.140    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00037048

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00037049

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00034264

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00037051

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00034265

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00034266

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00034267

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00034268

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.141    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00037054

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00034269

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00037058

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00037060

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00034270

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.463    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00034272

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00037062

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.137    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00034274

Length=37


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83828088


Query= TCONS_00034275

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.128    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00034276

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00034277

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.138    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00034278

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00037063

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00037064

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00034280

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00034281

Length=45


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.133    0.517    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83083784


Query= TCONS_00034282

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.341    0.150    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00037065

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00037066

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00034283

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.127    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00034284

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.127    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00037067

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00034286

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00034287

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.139    0.474    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00037068

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433061 pfam13249, SQHop_cyclase_N, Squalene-hopene cyclase N-...  345     4e-119


>CDD:433061 pfam13249, SQHop_cyclase_N, Squalene-hopene cyclase N-terminal 
domain.  Squalene-hopene cyclase, EC:5.4.99.17, catalyzes 
the cyclisation of squalene into hopene in bacteria. This reaction 
is part of a cationic cyclisation cascade, which is homologous 
to a key step in cholesterol biosynthesis. This family 
is the N-terminal domain.
Length=290

 Score = 345 bits (887),  Expect = 4e-119, Method: Composition-based stats.
 Identities = 111/280 (40%), Positives = 156/280 (56%), Gaps = 6/280 (2%)

Query  46   HWCGELESNVTVTCEHIFFLYVLYQHIDPGEGSQYRQWLLLQQNSDGSWGIAPNYPGDIS  105
            HW GELE+NVT+T E+I   + L    DP   ++  ++L  QQ  DG W +    PGD+S
Sbjct  17   HWVGELEANVTITAEYILLRHFL-GPDDPELEAKIARYLRSQQREDGGWPLFHGGPGDLS  75

Query  106  TSAEAYLALRIIGMSTDSPELYRARTFIRAAGGLSKMRMFTRIFFAEFGLVPWTAIPQLP  165
            T+ EAY AL+++G S D+P + RAR FI A GG +K  +FTRI+ A FG  PW  +P +P
Sbjct  76   TTVEAYFALKLLGDSPDAPHMVRAREFILARGGAAKANVFTRIWLALFGQYPWRGVPSMP  135

Query  166  AEFILVPAHFPISIYRLASWARSNVVPLLIIAHHRPLYPLPNGLHKQNPFLDELWLDPAT  225
             E +L+P  FP +IY+ +SWAR+ +VPLLI++  +P+ PLP G+      LDEL+++P  
Sbjct  136  PEIMLLPRWFPFNIYKFSSWARTTIVPLLILSALKPVAPLPPGIG-----LDELFVEPPE  190

Query  226  KPLPYGSSDPTDPVAFVFTILDKALSYLGGLRRSPTRGYARRRCVQWILQHQEKAGDWAG  285
                Y           +F  LD+ L     L   P R  A R+  +WIL+ QE  G   G
Sbjct  191  NVRYYPRPHRLFSWTNLFLGLDRVLKLYERLPPKPLRRRALRKAEEWILERQEGDGGLGG  250

Query  286  IIPPMHAGIKALLLEGYKLHDEPIQLGLAAIERFTWADNR  325
            I P M   + AL L GY L    +   L A++R    D  
Sbjct  251  IFPAMVNSVLALHLLGYPLDHPVVARALEALDRLLVEDED  290



Lambda      K        H        a         alpha
   0.322    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00037069

Length=391


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00037071

Length=391


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00037070

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  190     1e-55


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 190 bits (484),  Expect = 1e-55, Method: Composition-based stats.
 Identities = 113/437 (26%), Positives = 176/437 (40%), Gaps = 44/437 (10%)

Query  43   PKTERPWDILGLVKIYSSTKHLLNETALSNVSALFKCYGDTYASRILTQRVYFTCDPRNI  102
            P    P  + G +       +L      S  + L K YG  +   +  + V     P  +
Sbjct  1    PPGPPPLPLFGNLLQLGRKGNLH-----SVFTKLQKKYGPIFRLYLGPKPVVVLSGPEAV  55

Query  103  RHVLINRFSDFDASDVRAHLFAPITPH---GIFAVDGAEWKEARSLYADIFSATRKIFDL  159
            + VLI +  +F              P    GI   +G  W++ R      F++  K   L
Sbjct  56   KEVLIKKGEEFSGRPDEPWFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGK---L  112

Query  160  QLQEDGFQG--------LIKQIPRGQAMDLAPLFLKLVLDVNSAFAMGTGLDTLKQDQSL  211
               E   +         L K       +D+  L  +  L+V  +   G    +L+  + L
Sbjct  113  SF-EPRVEEEARDLVEKLRKTAGEPGVIDITDLLFRAALNVICSILFGERFGSLEDPKFL  171

Query  212  E-KKEVAEALMYAKKIMARDGFLGP-LHYLLS--RKDFYAACETVKAYVEKVVRKEMTAR  267
            E  K V E          +   L P L Y      +    A + +K  ++K++ +     
Sbjct  172  ELVKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDLLDKLIEERRETL  231

Query  268  EYQKQSNAATVDDERQKRTQSLLSRILDNTNDVHAVRDAVVTILIAGTDSVASMLSTTFY  327
            +  K+S    +D     + +   S+ L +      +R  V+ +  AGTD+ +S LS   Y
Sbjct  232  DSAKKSPRDFLDALLLAKEEEDGSK-LTDEE----LRATVLELFFAGTDTTSSTLSWALY  286

Query  328  LLARHERVYAKLRQEILDTIG-TEPPTYDNIRKATYLRYVFNEAMRVYPPVPFN-ARTAN  385
             LA+H  V  KLR+EI + IG    PTYD+++   YL  V  E +R++P VP    R   
Sbjct  287  ELAKHPEVQEKLREEIDEVIGDKRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVT  346

Query  386  RDTYLPAGGGPDGQSGVLIRKGQRVIFASWGSHRSTRSFGADALEFRPERW---EGLKSE  442
            +DT +P         G LI KG  VI   +  HR    F  +  EF PER+    G   +
Sbjct  347  KDTVIP---------GYLIPKGTLVIVNLYALHRDPEVF-PNPEEFDPERFLDENGKFRK  396

Query  443  SLGYIPFSAGPRVCLGR  459
            S  ++PF AGPR CLG 
Sbjct  397  SFAFLPFGAGPRNCLGE  413



Lambda      K        H        a         alpha
   0.322    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00037072

Length=391


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00042859

Length=391


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 469109284


Query= TCONS_00037073

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  207     1e-61


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 207 bits (528),  Expect = 1e-61, Method: Composition-based stats.
 Identities = 125/483 (26%), Positives = 193/483 (40%), Gaps = 46/483 (10%)

Query  43   PKTERPWDILGLVKIYSSTKHLLNETALSNVSALFKCYGDTYASRILTQRVYFTCDPRNI  102
            P    P  + G +       +L      S  + L K YG  +   +  + V     P  +
Sbjct  1    PPGPPPLPLFGNLLQLGRKGNLH-----SVFTKLQKKYGPIFRLYLGPKPVVVLSGPEAV  55

Query  103  RHVLINRFSDFDASDVRAHLFAPITPH---GIFAVDGAEWKEARSLYADIFSATRKIFDL  159
            + VLI +  +F              P    GI   +G  W++ R      F++  K   L
Sbjct  56   KEVLIKKGEEFSGRPDEPWFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGK---L  112

Query  160  QLQEDGFQG--------LIKQIPRGQAMDLAPLFLKLVLDVNSAFAMGTGLDTLKQDQSL  211
               E   +         L K       +D+  L  +  L+V  +   G    +L+  + L
Sbjct  113  SF-EPRVEEEARDLVEKLRKTAGEPGVIDITDLLFRAALNVICSILFGERFGSLEDPKFL  171

Query  212  E-KKEVAEALMYAKKIMARDGFLGP-LHYLLS--RKDFYAACETVKAYVEKVVRKEMTAR  267
            E  K V E          +   L P L Y      +    A + +K  ++K++ +     
Sbjct  172  ELVKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDLLDKLIEERRETL  231

Query  268  EYQKQSNAATVDDERQKRTQSLLSRILDNTNDVHAVRDAVVTILIAGTDSVASMLSTTFY  327
            +  K+S    +D     + +   S+ L +      +R  V+ +  AGTD+ +S LS   Y
Sbjct  232  DSAKKSPRDFLDALLLAKEEEDGSK-LTDEE----LRATVLELFFAGTDTTSSTLSWALY  286

Query  328  LLARHERVYAKLRQEILDTIG-TEPPTYDNIRKATYLRYVFNEAMRVYPPVPFN-ARTAN  385
             LA+H  V  KLR+EI + IG    PTYD+++   YL  V  E +R++P VP    R   
Sbjct  287  ELAKHPEVQEKLREEIDEVIGDKRSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVT  346

Query  386  RDTYLPAGGGPDGQSGVLIRKGQRVIFASWGSHRSTRSFGADALEFRPERW---EGLKSE  442
            +DT +P         G LI KG  VI   +  HR    F  +  EF PER+    G   +
Sbjct  347  KDTVIP---------GYLIPKGTLVIVNLYALHRDPEVF-PNPEEFDPERFLDENGKFRK  396

Query  443  SLGYIPFSAGPRVCLGQQYALLEASYATIRIIQTFERLENRDVRPWT--EKIGLNLSNKN  500
            S  ++PF AGPR CLG++ A +E       ++Q FE        P    E  GL L  K 
Sbjct  397  SFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPGTDPPDIDETPGLLLPPKP  456

Query  501  GVL  503
              L
Sbjct  457  YKL  459



Lambda      K        H        a         alpha
   0.322    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 631365522


Query= TCONS_00037075

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395776 pfam00975, Thioesterase, Thioesterase domain. Peptide ...  69.3    1e-14


>CDD:395776 pfam00975, Thioesterase, Thioesterase domain.  Peptide synthetases 
are involved in the non-ribosomal synthesis of peptide 
antibiotics. Next to the operons encoding these enzymes, in 
almost all cases, are genes that encode proteins that have 
similarity to the type II fatty acid thioesterases of vertebrates. 
There are also modules within the peptide synthetases 
that also share this similarity. With respect to antibiotic 
production, thioesterases are required for the addition of 
the last amino acid to the peptide antibiotic, thereby forming 
a cyclic antibiotic. Thioesterases (non-integrated) have 
molecular masses of 25-29 kDa.
Length=223

 Score = 69.3 bits (170),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 54/116 (47%), Gaps = 8/116 (7%)

Query  33   PLWLVHAAAGEALIFINLARLINDQ-PVYAFKARGFVCGEIYFTSIDECVRTYYEAIKEL  91
            PL+    A G A  F +LAR +     V A +  G   GE    SI+     Y EA++++
Sbjct  2    PLFCFPPAGGSASSFRSLARRLPPPAEVLAVQYPGRGRGEPPLNSIEALADEYAEALRQI  61

Query  92   QPHGPHAILEYSYGGMLAFELAKIWRRKKISLNR-------PPYVSARLQEVKWTD  140
            QP GP+A+  +S GGMLAFE+A+   R+  ++          P+           D
Sbjct  62   QPEGPYALFGHSMGGMLAFEVARRLERQGEAVRSLFLSDASAPHTVRYEASRAPDD  117



Lambda      K        H        a         alpha
   0.322    0.135    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00037076

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            71.3    4e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 71.3 bits (175),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 57/309 (18%), Positives = 101/309 (33%), Gaps = 26/309 (8%)

Query  1    MADFCVGRTQATLCITLYTLGLATGPLVLSPISEAYGRRWVYIPAISFVLAFSAGAAAAK  60
              D  +  T+  L +TL++LG A    +   +S+ +GRR V +  +            A 
Sbjct  24   AEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFAS  83

Query  61   GFAILLTCRFFSGFFCSVGIAVGGGTVADIWPRGKQRATASLLFVLAPFLALTLGPTAGA  120
               +LL  R   G             +AD +P  ++R  A  L      L   LGP  G 
Sbjct  84   SLWLLLVLRVLQGLGAGALFPAALALIADWFPP-EERGRALGLVSAGFGLGAALGPLLGG  142

Query  121  YVLHIRHANWRWTQWMVVFFCLPLWLMFVVMRETSGEQPLHDANNGWEEIRLSARSFYLP  180
             +       WR    ++    L   ++ ++ R      P        EE RLS       
Sbjct  143  LLAS--LFGWRAAFLILAILSLLAAVLLLLPR----PPPESKRPKPAEEARLSLIV---A  193

Query  181  LRLLFTDYIILSLTVYTSFSYATVFSYFSSLQHVLMLDYGFDTRQASLGL-LSQIVGNFC  239
             + L  D ++    +     +   F    +   +     G     A L L L  ++G   
Sbjct  194  WKALLRDPVL--WLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGLLGAIG  251

Query  240  AIILWVVLEKAATSSEEKLPGKVFQPERHLYAGVIGGLLMCLAEIWFALAGRPGGTWVNL  299
             ++L  + ++                 R L   ++  +L  L  +  +L        + L
Sbjct  252  RLLLGRLSDR-------------LGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL  298

Query  300  VATGIPLGC  308
            +  G   G 
Sbjct  299  LLLGFGFGL  307



Lambda      K        H        a         alpha
   0.329    0.141    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0724    0.140     1.90     42.6     43.6 

Effective search space used: 524526768


Query= TCONS_00037077

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM re...  181     2e-55


>CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM region, putative 
phosphate.  RSN1_7TM is the seven transmembrane domain 
region of putative phosphate transporter. The family is the 
7TM region of osmosensitive calcium-permeable cation channels.
Length=273

 Score = 181 bits (463),  Expect = 2e-55, Method: Composition-based stats.
 Identities = 90/272 (33%), Positives = 133/272 (49%), Gaps = 32/272 (12%)

Query  118  SISITVILNVLEIVWAVPIAMTGLLSQLSYLDTISIDLA---DLSEWQVSAIQGLAPQAA  174
             + + + + +L I WA+P+A  GLLS L  L  +   L    +L    +  + GL P   
Sbjct  2    RLIVNLAIFLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILELPPKLLGLVTGLLPPLL  61

Query  175  LSLLMYCFPYIICALSNFFVHFEGSSVETLIQRHYFTFLYVQLFLV--------------  220
            LSLLM   P I+  LS        S +E  +Q  YF FL V +FLV              
Sbjct  62   LSLLMALLPIILRFLSKLQGAPSRSDIELSVQSKYFAFLVVNVFLVFTLASSASSLIEQI  121

Query  221  -----SIPLILARNLPKSCNYFFSYLILQAVVQTSTILFQLPDGLWRGLRRG--------  267
                 SIP +LA NLPK+ N+F +Y++LQ +   +  L QL   +   ++R         
Sbjct  122  IDNPTSIPTLLATNLPKASNFFITYILLQGLSGAAGELLQLGPLILFYIKRKFLDKTPRD  181

Query  268  --QAEHSMKRVRWSLVYPVFANLICICIIFSLLSPLILPIGLLTFKVFLILYSYQATYVL  325
              +   +     +  VYPVF  +  I +I+S+++PLILP GL+ F +   +Y YQ  YV 
Sbjct  182  KYERYTTPPSFDYGTVYPVFLLIFTIGLIYSVIAPLILPFGLVYFGLGYFVYKYQLLYVY  241

Query  326  ESDKETSGLLYWEAVNYLFVGIYTMDLCLIGL  357
             +  E+ G  +  A+N L VG+Y   LCLIGL
Sbjct  242  VTKYESGGRFWPRALNRLLVGLYLFQLCLIGL  273



Lambda      K        H        a         alpha
   0.329    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00037078

Length=187


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 177534840


Query= TCONS_00037079

Length=582


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.128    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 732269720


Query= TCONS_00037080

Length=291


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00037081

Length=620
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         246     2e-75
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            88.2    2e-19


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 246 bits (630),  Expect = 2e-75, Method: Composition-based stats.
 Identities = 133/428 (31%), Positives = 210/428 (49%), Gaps = 36/428 (8%)

Query  208  LFGYDQGVFGGILSNPTFQKQFDHPN--------TTMQGQIVSTYVLGCVAGAFLSMYTG  259
            LFGYD GV G  L+   F K F            + + G IVS + +GC  G+  +   G
Sbjct  11   LFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLG  70

Query  260  DRLGRRRSVLLASAFLTIGGILQSMAFTLPH---LIVGRIVAGLGVGMNTTTVPMWQSET  316
            DR GR++S+L+A+    IG +LQ  A        LIVGR++ G+GVG  +   PM+ SE 
Sbjct  71   DRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEI  130

Query  317  CKQEDRGKLITIQLTHLVFGFVLANWINFGFTYSPYQQISWRFPLAFQSFLAILAASMVP  376
              ++ RG L ++    + FG +LA     G   +      WR PL  Q   A+L    + 
Sbjct  131  APKKLRGALGSLYQLAITFGILLAYIFGLGLNKT-SNSDGWRIPLGLQLVPALLLIIGLL  189

Query  377  FLVESPRWLCVRSRSPAAKEVIARVLDKRLEDDEVLTSLQSIETTVAHEMESQKPGWRTI  436
            FL ESPRWL  + R   A+EV+A++      D E+     S+E       E++K  W+ +
Sbjct  190  FLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLE----AGQEAEKASWKEL  245

Query  437  FSNGPQQTFRRIALGVGVNFMQQFGGVNVVAYYLPIIMKRSFGFSDRM--SLILSAVDSM  494
            FS   ++  +R+ +GV +   QQ  G+N + YY   I + + G SD    ++I+  V+  
Sbjct  246  FSTKTRR--QRLLIGVMLQIFQQLTGINAIFYYSTTIFE-NLGLSDSFLVTIIVGVVN--  300

Query  495  QWMFWTGLGTLLIDRLGRRKLLIVGAAGQSLCFAMTALGLGIGTKPLE-------GLAVA  547
                +T +   L+DR GRR LL++GAAG ++CF    + LGI              +A+ 
Sbjct  301  --FVFTFIAIFLVDRFGRRPLLLLGAAGMAICF----VILGIVALLGVSKSDWAGIVAIV  354

Query  548  FIFVYYAFFGLSFLAIPFMYPSELNSSIHRNFACSAAMVMEWLGVYVIVAITPVGDLVPP  607
            FI ++ AFF + +  +P++  SEL     R+ A + A    WL  ++I  + P+      
Sbjct  355  FIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIG  414

Query  608  PLWMYHYF  615
              + +  F
Sbjct  415  LGYTFFIF  422


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 88.2 bits (219),  Expect = 2e-19, Method: Composition-based stats.
 Identities = 66/360 (18%), Positives = 121/360 (34%), Gaps = 47/360 (13%)

Query  204  VSFMLFGYDQGVFGGILSNPTFQKQFDHPNTTMQGQIVSTYVLGCVAGAFLSMYTGDRLG  263
            ++  L    + + G  L      +     + T  G +++ + LG      L+    DR G
Sbjct  3    LAAFLAALGRSLLGPALP-LLLAEDL-GISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  264  RRRSVLLASAFLTIGGILQSMAFTLPHLIVGRIVAGLGVGMNTTTVPMWQSETCKQEDRG  323
            RRR +L+      +G +L   A +L  L+V R++ GLG G          ++    E+RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  324  KLITIQLTHLVFGFVLANWINFGFTYSPYQQISWRFPLAFQSFLAILAASMVPFLVESPR  383
            + + +       G  L   +  G   S      WR      + L++LAA ++      P 
Sbjct  121  RALGLVSAGFGLGAALGPLL-GGLLAS---LFGWRAAFLILAILSLLAAVLLLLPRPPPE  176

Query  384  WLCVRSRSPAAKEVIARVLDKRLEDDEVLTSLQSIETTVAHEMESQKPGWRTIFSNGPQQ  443
                  R   A+E    ++                              W+ +  +    
Sbjct  177  ----SKRPKPAEEARLSLIV----------------------------AWKALLRDPVLW  204

Query  444  TFRRIALGVGVNFMQQFGGVNVVAYYLPIIMKRSFGFSDRMSLILSAVDSMQWMFWTGLG  503
                + L     F         +  YLP+  +   G S  ++ +L  +  +       L 
Sbjct  205  LLLALLLFGFAFFG--------LLTYLPLYQEV-LGLSALLAGLLLGLGGLLGAIGRLLL  255

Query  504  TLLIDRLGRRKLLIVGAAGQSLCFAMTALGLGIGTKPLEGLAVAFIFVYYAFFGLSFLAI  563
              L DRLGRR+ L++      L      L     +     LA+  +   +     +  A+
Sbjct  256  GRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNAL  315



Lambda      K        H        a         alpha
   0.324    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 789057984


Query= TCONS_00037082

Length=685
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter         283     6e-89
CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            90.2    5e-20


>CDD:395036 pfam00083, Sugar_tr, Sugar (and other) transporter.  
Length=452

 Score = 283 bits (726),  Expect = 6e-89, Method: Composition-based stats.
 Identities = 149/458 (33%), Positives = 233/458 (51%), Gaps = 37/458 (8%)

Query  208  LFGYDQGVFGGILSNPTFQKQFDHPN--------TTMQGQIVSTYVLGCVAGAFLSMYTG  259
            LFGYD GV G  L+   F K F            + + G IVS + +GC  G+  +   G
Sbjct  11   LFGYDTGVIGAFLTLIDFFKNFGLSKSVSSLAALSVLSGLIVSIFSVGCFIGSLFAGKLG  70

Query  260  DRLGRRRSVLLASAFLTIGGILQSMAFTLPH---LIVGRIVAGLGVGMNTTTVPMWQSET  316
            DR GR++S+L+A+    IG +LQ  A        LIVGR++ G+GVG  +   PM+ SE 
Sbjct  71   DRFGRKKSLLIANVLFVIGAVLQGAAKGKWSVYQLIVGRVLVGIGVGGASVLAPMYISEI  130

Query  317  CKQEDRGKLITIQLTHLVFGFVLANWINFGFTYSPYQQISWRFPLAFQSFLAILAASMVP  376
              ++ RG L ++    + FG +LA     G   +      WR PL  Q   A+L    + 
Sbjct  131  APKKLRGALGSLYQLAITFGILLAYIFGLGLNKT-SNSDGWRIPLGLQLVPALLLIIGLL  189

Query  377  FLVESPRWLCVRSRSPAAKEVIARVLDKRLEDDEVLTSLQSIETTVAHEMESQKPGWRTI  436
            FL ESPRWL  + R   A+EV+A++      D E+     S+E       E++K  W+ +
Sbjct  190  FLPESPRWLVEKGRLEEAREVLAKLRGVPDVDRELDEIKDSLE----AGQEAEKASWKEL  245

Query  437  FSNGPQQTFRRIALGVGVNFMQQFGGVNVVAYYLPIIMKRSFGFSDRM--SLILSAVDSM  494
            FS   ++  +R+ +GV +   QQ  G+N + YY   I + + G SD    ++I+  V+  
Sbjct  246  FSTKTRR--QRLLIGVMLQIFQQLTGINAIFYYSTTIFE-NLGLSDSFLVTIIVGVVN--  300

Query  495  QWMFWTGLGTLLIDRLGRRKLLIVGAAGQSLCFAMTALGLGIGTKPLE-------GLAVA  547
                +T +   L+DR GRR LL++GAAG ++CF    + LGI              +A+ 
Sbjct  301  --FVFTFIAIFLVDRFGRRPLLLLGAAGMAICF----VILGIVALLGVSKSDWAGIVAIV  354

Query  548  FIFVYYAFFGLSFLAIPFMYPSELNSSIHRNFACSAAMVMEWLGVYVIVAITPVGIESI-  606
            FI ++ AFF + +  +P++  SEL     R+ A + A    WL  ++I  + P+  ++I 
Sbjct  355  FIALFIAFFAMGWGPVPWVIVSELFPLSVRSKAMALATAANWLANFLIGFLFPIITDAIG  414

Query  607  AWKFYLVFAIANFVFTIVCWFFVVETSGLSLEEIDKMF  644
                + +FA    +F I  +FFV ET G +LEEID++F
Sbjct  415  LGYTFFIFAGLLVLFIIFVFFFVPETKGRTLEEIDELF  452


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 90.2 bits (224),  Expect = 5e-20, Method: Composition-based stats.
 Identities = 68/373 (18%), Positives = 124/373 (33%), Gaps = 48/373 (13%)

Query  204  VSFMLFGYDQGVFGGILSNPTFQKQFDHPNTTMQGQIVSTYVLGCVAGAFLSMYTGDRLG  263
            ++  L    + + G  L      +     + T  G +++ + LG      L+    DR G
Sbjct  3    LAAFLAALGRSLLGPALP-LLLAEDL-GISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  264  RRRSVLLASAFLTIGGILQSMAFTLPHLIVGRIVAGLGVGMNTTTVPMWQSETCKQEDRG  323
            RRR +L+      +G +L   A +L  L+V R++ GLG G          ++    E+RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  324  KLITIQLTHLVFGFVLANWINFGFTYSPYQQISWRFPLAFQSFLAILAASMVPFLVESPR  383
            + + +       G  L   +  G   S      WR      + L++LAA ++      P 
Sbjct  121  RALGLVSAGFGLGAALGPLL-GGLLAS---LFGWRAAFLILAILSLLAAVLLLLPRPPPE  176

Query  384  WLCVRSRSPAAKEVIARVLDKRLEDDEVLTSLQSIETTVAHEMESQKPGWRTIFSNGPQQ  443
                  R   A+E    ++                              W+ +  +    
Sbjct  177  ----SKRPKPAEEARLSLIV----------------------------AWKALLRDPVLW  204

Query  444  TFRRIALGVGVNFMQQFGGVNVVAYYLPIIMKRSFGFSDRMSLILSAVDSMQWMFWTGLG  503
                + L     F         +  YLP+  +   G S  ++ +L  +  +       L 
Sbjct  205  LLLALLLFGFAFFG--------LLTYLPLYQEV-LGLSALLAGLLLGLGGLLGAIGRLLL  255

Query  504  TLLIDRLGRRKLLIVGAAGQSLCFAMTALGLGIGTKPLEGLAVAFIFVYYAF-FGLSFLA  562
              L DRLGRR+ L++      L      L     +     LA+  +   +   F      
Sbjct  256  GRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNAL  315

Query  563  IPFMYPSELNSSI  575
            +  + P E   + 
Sbjct  316  VSDLAPKEERGTA  328



Lambda      K        H        a         alpha
   0.324    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 873075680


Query= TCONS_00037083

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:407962 pfam18130, ATPgrasp_N, ATP-grasp N-terminal domain. Th...  66.1    4e-15


>CDD:407962 pfam18130, ATPgrasp_N, ATP-grasp N-terminal domain.  This is 
the N-terminal domain found in BL00235 present in Bacillus licheniformis. 
BL00235 is a ATP-grasp superfamily protein that 
catalyzes the formation of an alpha-peptide bond between two 
L-amino acids in an ATP-dependent manner. BL00235 has a highly 
restricted substrate specificity: the N-terminal substrate 
is confined to L-methionine an L-leucine, while the C-terminal 
substrates include small residues such as L-alanine, 
L-serine, L-threonine and L-cysteine.
Length=81

 Score = 66.1 bits (162),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 44/82 (54%), Gaps = 4/82 (5%)

Query  15  FEAAHALGVSLIVLGEPDHWLASETYSHLHKEFIALDLSQHTNLPNR-IAAAVCGRAIDG  73
           FEAA ALG+ + V+ EP  W        +  EFI LDL+   +     + A    R +DG
Sbjct  1   FEAARALGIDVTVVDEPGEWAPGHLP-AVE-EFIPLDLADDPDRALEIVRALHRARPVDG  58

Query  74  IIVTFTDEYVVTTAEAAEILGL  95
            +VTFTD ++   A AAE LGL
Sbjct  59  -VVTFTDPFLPFVARAAEALGL  79



Lambda      K        H        a         alpha
   0.320    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00037084

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:407962 pfam18130, ATPgrasp_N, ATP-grasp N-terminal domain. Th...  66.1    4e-15


>CDD:407962 pfam18130, ATPgrasp_N, ATP-grasp N-terminal domain.  This is 
the N-terminal domain found in BL00235 present in Bacillus licheniformis. 
BL00235 is a ATP-grasp superfamily protein that 
catalyzes the formation of an alpha-peptide bond between two 
L-amino acids in an ATP-dependent manner. BL00235 has a highly 
restricted substrate specificity: the N-terminal substrate 
is confined to L-methionine an L-leucine, while the C-terminal 
substrates include small residues such as L-alanine, 
L-serine, L-threonine and L-cysteine.
Length=81

 Score = 66.1 bits (162),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 44/82 (54%), Gaps = 4/82 (5%)

Query  15  FEAAHALGVSLIVLGEPDHWLASETYSHLHKEFIALDLSQHTNLPNR-IAAAVCGRAIDG  73
           FEAA ALG+ + V+ EP  W        +  EFI LDL+   +     + A    R +DG
Sbjct  1   FEAARALGIDVTVVDEPGEWAPGHLP-AVE-EFIPLDLADDPDRALEIVRALHRARPVDG  58

Query  74  IIVTFTDEYVVTTAEAAEILGL  95
            +VTFTD ++   A AAE LGL
Sbjct  59  -VVTFTDPFLPFVARAAEALGL  79



Lambda      K        H        a         alpha
   0.320    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00037085

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:407962 pfam18130, ATPgrasp_N, ATP-grasp N-terminal domain. Th...  66.1    4e-15


>CDD:407962 pfam18130, ATPgrasp_N, ATP-grasp N-terminal domain.  This is 
the N-terminal domain found in BL00235 present in Bacillus licheniformis. 
BL00235 is a ATP-grasp superfamily protein that 
catalyzes the formation of an alpha-peptide bond between two 
L-amino acids in an ATP-dependent manner. BL00235 has a highly 
restricted substrate specificity: the N-terminal substrate 
is confined to L-methionine an L-leucine, while the C-terminal 
substrates include small residues such as L-alanine, 
L-serine, L-threonine and L-cysteine.
Length=81

 Score = 66.1 bits (162),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 44/82 (54%), Gaps = 4/82 (5%)

Query  15  FEAAHALGVSLIVLGEPDHWLASETYSHLHKEFIALDLSQHTNLPNR-IAAAVCGRAIDG  73
           FEAA ALG+ + V+ EP  W        +  EFI LDL+   +     + A    R +DG
Sbjct  1   FEAARALGIDVTVVDEPGEWAPGHLP-AVE-EFIPLDLADDPDRALEIVRALHRARPVDG  58

Query  74  IIVTFTDEYVVTTAEAAEILGL  95
            +VTFTD ++   A AAE LGL
Sbjct  59  -VVTFTDPFLPFVARAAEALGL  79



Lambda      K        H        a         alpha
   0.320    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 227911416


Query= TCONS_00037086

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:407962 pfam18130, ATPgrasp_N, ATP-grasp N-terminal domain. Th...  66.1    2e-14


>CDD:407962 pfam18130, ATPgrasp_N, ATP-grasp N-terminal domain.  This is 
the N-terminal domain found in BL00235 present in Bacillus licheniformis. 
BL00235 is a ATP-grasp superfamily protein that 
catalyzes the formation of an alpha-peptide bond between two 
L-amino acids in an ATP-dependent manner. BL00235 has a highly 
restricted substrate specificity: the N-terminal substrate 
is confined to L-methionine an L-leucine, while the C-terminal 
substrates include small residues such as L-alanine, 
L-serine, L-threonine and L-cysteine.
Length=81

 Score = 66.1 bits (162),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 44/82 (54%), Gaps = 4/82 (5%)

Query  15  FEAAHALGVSLIVLGEPDHWLASETYSHLHKEFIALDLSQHTNLPNR-IAAAVCGRAIDG  73
           FEAA ALG+ + V+ EP  W        +  EFI LDL+   +     + A    R +DG
Sbjct  1   FEAARALGIDVTVVDEPGEWAPGHLP-AVE-EFIPLDLADDPDRALEIVRALHRARPVDG  58

Query  74  IIVTFTDEYVVTTAEAAEILGL  95
            +VTFTD ++   A AAE LGL
Sbjct  59  -VVTFTDPFLPFVARAAEALGL  79



Lambda      K        H        a         alpha
   0.320    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00037087

Length=587
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 63.5    3e-11


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 63.5 bits (155),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 3/108 (3%)

Query  74   FDQWAEKFPERVAAEWQ-GKSLTYGALRDASLHVSRALLRAGLLPRARAPLLTQMSLEML  132
             ++ A + P++ A E   G+ LTY  L + +  ++  L   G+    R  +L   S E +
Sbjct  1    LERQAARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWV  60

Query  133  SAVIGILRVGPCYVPMEVAAGSSARIEAALSELASPVVVITSPCPGLQ  180
             A +  L+ G  YVP+      +  +   L + +   V+IT     L+
Sbjct  61   VAFLACLKAGAVYVPLN-PRLPAEELAYILED-SGAKVLITDDALKLE  106



Lambda      K        H        a         alpha
   0.317    0.129    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 739741860


Query= TCONS_00042860

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00037089

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 63.9    2e-11


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 63.9 bits (156),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 3/108 (3%)

Query  74   FDQWAEKFPERVAAEWQ-GKSLTYGALRDASLHVSRALLRAGLLPRARAPLLTQMSLEML  132
             ++ A + P++ A E   G+ LTY  L + +  ++  L   G+    R  +L   S E +
Sbjct  1    LERQAARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWV  60

Query  133  SAVIGILRVGPCYVPMEVAAGSSARIEAALSELASPVVVITSPCPGLQ  180
             A +  L+ G  YVP+      +  +   L + +   V+IT     L+
Sbjct  61   VAFLACLKAGAVYVPLN-PRLPAEELAYILED-SGAKVLITDDALKLE  106



Lambda      K        H        a         alpha
   0.318    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 529127880


Query= TCONS_00037088

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme                 63.1    4e-12


>CDD:459834 pfam00501, AMP-binding, AMP-binding enzyme.  
Length=417

 Score = 63.1 bits (154),  Expect = 4e-12, Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 3/108 (3%)

Query  74   FDQWAEKFPERVAAEWQ-GKSLTYGALRDASLHVSRALLRAGLLPRARAPLLTQMSLEML  132
             ++ A + P++ A E   G+ LTY  L + +  ++  L   G+    R  +L   S E +
Sbjct  1    LERQAARTPDKTALEVGEGRRLTYRELDERANRLAAGLRALGVGKGDRVAILLPNSPEWV  60

Query  133  SAVIGILRVGPCYVPMEVAAGSSARIEAALSELASPVVVITSPCPGLQ  180
             A +  L+ G  YVP+      +  +   L + +   V+IT     L+
Sbjct  61   VAFLACLKAGAVYVPLN-PRLPAEELAYILED-SGAKVLITDDALKLE  106



Lambda      K        H        a         alpha
   0.318    0.131    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00037090

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                236     8e-74
CDD:404414 pfam13520, AA_permease_2, Amino acid permease              82.0    1e-17


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 236 bits (603),  Expect = 8e-74, Method: Composition-based stats.
 Identities = 121/350 (35%), Positives = 184/350 (53%), Gaps = 6/350 (2%)

Query  60   HLTMVALGSAIGMGMWLGSGTSLLKGGPASLFIGYLISSSILWSVSQCIGEMAVVYPLPS  119
            H+ M+ALG  IG G+++GSG+ L + GPA   +GYLIS  +++ V   +GE++   P+  
Sbjct  1    HVQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSG  60

Query  120  AFVQWTTIFISPAAGFALGWGYWFSYWITIANELQFVVTILNYW--TDEVPKA-AWITIF  176
             F  + + F+ P+ GFA GW YW S+   +A EL     ++ +W    ++P    W  +F
Sbjct  61   GFYTYASRFLGPSLGFATGWNYWLSWITVLALELTAASILIQFWELVPDIPYLWVWGAVF  120

Query  177  WVVIILVNIWVVKFFAEVEVVASTIKFSWMLIAIVALIVITAGGVPEQQGPIGFQYWN--  234
             V++ ++N+  VK++ E E   + IK   ++  I+  I++ +GG P       +   N  
Sbjct  121  LVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAIFRYLGDNGG  180

Query  235  EQPFINGF-KGFITVLPTCVFAMAGSENAALVATEVANPRRSVPKAVTSIWLRLGLFYIL  293
            +  F  GF KGFI+V     FA  G E   + A EV NP +S+PKA+  +  R+ +FYIL
Sbjct  181  KNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYIL  240

Query  294  GSLMITLTIDPKDPNLFGGFGSNASPFVIAFKNAGIPAMAHITNAVIFISVISTGSISGY  353
              L I L +   DP L     S ASPFVI FK  GI  +A + NAVI  + +S  + S Y
Sbjct  241  SLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLY  300

Query  354  GGSRMLMGLAHVNMNFKIYGEADKMGRPWAGYITTIGIGGALAYINVSNT  403
             GSRML  LA   +  K   + DK G P    + ++ I      +   N 
Sbjct  301  SGSRMLYSLARDGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLASLNP  350


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 82.0 bits (203),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 136/344 (40%), Gaps = 11/344 (3%)

Query  56   LGTRHLTMVALGSAIGMGMWLGSGTSLLKGGPASLFIGYLISSSILWSVSQCIGEMAVVY  115
            LG      + +GS IG G+++        GGPA +  G++ +     +V     E++   
Sbjct  1    LGLLSAFALVIGSVIGSGIFVAPLV--ASGGPALIVWGWIAAIIFSLAVGLVYAELSSAL  58

Query  116  PLPSAFVQWTTIFISPAAGFALGWGYWFSYWITIA-NELQFVVTILNYWTDEVPKAAWIT  174
            P       +          F  GW  WF+Y + +A +       +L+    ++    W+T
Sbjct  59   PRSGGIYVYLENAFGKFVAFLAGWSNWFAYVLGLASSASVAASYLLSALGPDLVPTTWLT  118

Query  175  -IFWVVIILVNIWVVKFFAEVEVVASTIKFSWMLIAIVALIVITAGGVPEQQGPIGFQYW  233
                + I+++   +             I     L+  + LI+I      +  G       
Sbjct  119  YGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFNLLSGE  178

Query  234  NEQPFINGFKGFITVLPTCVFAMAGSENAALVATEVANPRRSVPKAVTSIWLRLGLFYIL  293
                F +G+ G        +++  G E+AA V+ EV   +R+VPKA+    + +G+ YIL
Sbjct  179  WHTFFPDGWPGVFAGFLGVLWSFTGFESAANVSEEV--KKRNVPKAIFIGVIIVGVLYIL  236

Query  294  GSLMITLTIDPKDPNLFGGFGSNASPFVIAFKNAGIPAMAHITNAVIFISVISTGSISGY  353
             ++     +   +  L  G G  A+     F+  G    A I   ++ +S++   + +  
Sbjct  237  VNIAFFGVVPDDEIALSSGLGQVAALL---FQAVGGKWGAIIVVILLALSLLGAVNTAIV  293

Query  354  GGSRMLMGLA--HVNMNFKIYGEADKMGRPWAGYITTIGIGGAL  395
            G SR+L  LA   V    + + + +K G P    I T  +   L
Sbjct  294  GASRLLYALARDGVLPFSRFFAKVNKFGSPIRAIILTAILSLIL  337



Lambda      K        H        a         alpha
   0.322    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 487749388


Query= TCONS_00042862

Length=20


***** No hits found *****



Lambda      K        H        a         alpha
   0.340    0.151    0.530    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 66022480


Query= TCONS_00042864

Length=363


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.133    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00042865

Length=390


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00037092

Length=370


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 443580360


Query= TCONS_00037095

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00037094

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00037093

Length=357


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 423131620


Query= TCONS_00037096

Length=676


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 859802570


Query= TCONS_00042866

Length=346


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 405828840


Query= TCONS_00037097

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00042867

Length=405


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00037098

Length=300


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0736    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00037099

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00042869

Length=439


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00042868

Length=653


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 825882400


Query= TCONS_00037100

Length=347


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00042870

Length=363


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00042871

Length=405


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.133    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00037101

Length=347


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00042872

Length=120


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82272330


Query= TCONS_00042873

Length=190


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.136    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 182607264


Query= TCONS_00037102

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            89.4    4e-20


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 89.4 bits (222),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 139/391 (36%), Gaps = 49/391 (13%)

Query  47   VAILNLIGTIASSIFGTGIKEFM-QEFNVSNEIAVQGTTLFLAGYIFGFLIFGPLSERFG  105
            + +   +  +  S+ G  +   + ++  +S        TLF  GY     + G LS+RFG
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  106  RKWPMLIGITASSLFDLMPALGTNVATVLIGRFFGGLFGVAPVAIFGGVLSDCWPLAQRG  165
            R+  +LIG+   +L  L+    +++  +L+ R   GL   A       +++D +P  +RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  166  IAMALAVSLVFSGPTWGPVCGGFIMGSPSLGWRWTMWVVVIIGLGFTLLCVLLYPETYPP  225
             A+ L  +    G   GP+ GG +      GWR    ++ I+ L   +L +L  P     
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLAS--LFGWRAAFLILAILSLLAAVLLLLPRPPPESK  178

Query  226  VILRAKVQALRRKNGNLNIRTALDKGGLSIQDIMSVYLVRPFWLLATQPILALLTLYQSF  285
                A+                 +     I    ++      WLL       L  L   F
Sbjct  179  RPKPAE-----------------EARLSLIVAWKALLRDPVLWLL-------LALLLFGF  214

Query  286  VYGVMFLFYQMYPVAFGDDRNWTTSLKYLPLLAIITGTFVGALGIVLHNQLYFRHHCHNP  345
             +  +  +  +Y    G       +   L L  ++       LG +              
Sbjct  215  AFFGLLTYLPLYQEVLGLSA--LLAGLLLGLGGLLGAIGRLLLGRLSD------------  260

Query  346  DGTYIPESRLPPMIVGCVMVPAGMFWFAWTASPDNVSWASPICASFMTGCGMYLLFIQGW  405
                    RL   ++  ++   G+   + T     +S    + A  + G G  L+F    
Sbjct  261  --RLGRRRRLLLALLLLILAALGLLLLSLT-----LSSLWLLLALLLLGFGFGLVFPALN  313

Query  406  NYIIDCY-TSMANSAMGINGSMRSVFGAVFP  435
              + D        +A G+  +  S+ GA+ P
Sbjct  314  ALVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.142    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00037105

Length=544


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00037106

Length=544


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 685871898


Query= TCONS_00037104

Length=497


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 614710796


Query= TCONS_00037103

Length=531


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 666189040


Query= TCONS_00037107

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                257     2e-80


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 257 bits (658),  Expect = 2e-80, Method: Composition-based stats.
 Identities = 128/472 (27%), Positives = 187/472 (40%), Gaps = 45/472 (10%)

Query  87   DVTTAFCKRAAIAQQLTSCLTEHFFAKAIERAQFLNEYLQREKKVIGPLHGLPISIKDNF  146
            ++  AF  R   A    +     FF +A+ +A   ++         GPLHG+PI++KDN 
Sbjct  1    ELVEAFLDRIEAANPKLNAFVTVFFDEALAQAAAADKQRAA-GDPKGPLHGVPIAVKDNI  59

Query  147  CLEGIRSTVGYVSLLQNETVSHNSALVEILLDLGAVLYVKTNIPQTMMVSDSENNIFSRT  206
             ++G+ +T G  +L  N    +++ +VE L   GAV+  KTN+ +  M S +EN++F  T
Sbjct  60   DVKGVPTTAGSKALE-NYPAPYDATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPT  118

Query  207  LNPHNTNLTAGGSSGGEGALVAFRGSILGVGTDIAGSIRIPSLCCGVYGFKPTTDRIPWG  266
             NP + + T GGSSGG  A VA     L +GTD  GSIRIP+  CG+ G KPT  R+   
Sbjct  119  RNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPASFCGLVGLKPTYGRVSRY  178

Query  267  GQVAGLAMEGIPGLKPSAGPLGHSLADIELFMSTVLKAEPWKYDVTASASPWQELPLTPA  326
            G V G A      L    GPL  S+ D  L +  +   +P       S  P       P 
Sbjct  179  G-VVGYA----SSLD-QVGPLARSVEDAALLLRVISGYDPKDST---SLPPPVPDYAEPV  229

Query  327  YSSQDKLTIGILPESKDFPLHPPVRRALESAIKSLCQRGHHIV--RLPDDPSRDLAYAGR  384
              S   L IG+  E   F L P VRRA+E A+  L   GH +V    P        Y   
Sbjct  230  KKSLKGLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVVEVDPPSLDYALPLYYLI  289

Query  385  L---AFQYFIYGLHIDHITSSGEPLVTSVAKMSSPMFTGPFPVDMELPPFEKINALHT--  439
                A         +         L       +     G   V   +       +     
Sbjct  290  APAEASSNLARYDGVPSGPDDLSELYPR----TRAEGLGD-EVKRRIILGNYALSAGYYD  344

Query  440  --------ARQEYADAWRRCWVGNGLDVVLAPGAQNTAVPHDTFGWPPYTVIWNLLDYPA  491
                     R+     +   +    LDV+L+P A   A            V++NL D+ A
Sbjct  345  KYYLKAQKVRRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEPDD-SPLVMYNLDDFTA  401

Query  492  CIIPYGEACKELDPVPMVIDDGVQPSYDPDSIDGAPTAIQVVAPRFQDEKCL  543
             ++P   A      +P                DG P  +Q++     +E  L
Sbjct  402  GVVPVNLAGLPAISLPAGFTA-----------DGLPVGVQIIGKPGDEETLL  442



Lambda      K        H        a         alpha
   0.319    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690425736


Query= TCONS_00037108

Length=703
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family...  277     3e-88
CDD:462408 pfam08244, Glyco_hydro_32C, Glycosyl hydrolases family...  139     6e-39


>CDD:425557 pfam00251, Glyco_hydro_32N, Glycosyl hydrolases family 32 N-terminal 
domain.  This domain corresponds to the N-terminal domain 
of glycosyl hydrolase family 32 which forms a five bladed 
beta propeller structure.
Length=308

 Score = 277 bits (710),  Expect = 3e-88, Method: Composition-based stats.
 Identities = 141/512 (28%), Positives = 173/512 (34%), Gaps = 216/512 (42%)

Query  37   HFSPEKNWMNDPNGLVYDAKEGVYHLYFQYNPGGTTWGAMSWGHATSKDLMHWTEHPVAL  96
            HF P K WMNDPNGLVY    G YHL++QYNP G  WG   WGHA SKDL+HW   PVAL
Sbjct  1    HFQPPKGWMNDPNGLVY--YNGEYHLFYQYNPFGAVWGNKHWGHAVSKDLVHWEHLPVAL  58

Query  97   RAKGFPDNITEMF-----FSGTVVIDERNTSGFGRNGKTPWVAMYTSYYPMEQVLPSGKR  151
                 PD   E +     FSG+ V+D  N            V +YT     E        
Sbjct  59   A----PD---EWYDSNGCFSGSAVVDPDNL-----------VLIYTGNVRDEG-------  93

Query  152  VKTNQQAQSIAYSLDRGMTWTTYDAANPVIAEPPTPYEDQYTEFRDPSVFWHDETHQWVA  211
               + Q Q++AYS D G T+T Y   NPVI   P  Y      FRDP V W+++  +W  
Sbjct  94   --RDTQVQNLAYSKDDGRTFTKY-PNNPVIINLPAGYTKH---FRDPKVAWYED-GKWYM  146

Query  212  VI---SLAKLHKILIYTSRDLKHWDLASEFGPANAV-GGVWECPSIFPLSLDGSKKTKFV  267
            V+      K  KIL+Y S DLK+W    E   +N   G +WECP +FPL     +K K V
Sbjct  147  VLGAQDNDKKGKILLYKSDDLKNWTFVGELLHSNDGGGYMWECPDLFPLDGKDGEKWKHV  206

Query  268  LMLGLNPGGPPGTVGSGTQYIVGDFN--GTTFTPDANSIYDGRGPEDSVIFEDFEGDKTL  325
            L    +P G          Y +G F+  G  FTPD                         
Sbjct  207  LK--FSPQGLSYDNIYQDYYFIGSFDLDGDKFTPD-------------------------  239

Query  326  AARGWTATGDLTSASPAKGTLPGQNPVTGYLGQQLLNTFLNGDATIGTLTSSPFEISHKY  385
                                                                        
Sbjct       ------------------------------------------------------------  

Query  386  INFLVGGGSNLNETAIRLKVNGQTVHTSTGSNSEGLAWQSWDVSALQGKTAVIEIIDNST  445
                                                                        
Sbjct       ------------------------------------------------------------  

Query  446  GGWGHINVDQISFSNQPATSTIANWMDWGPDFYAALGFNGLPQDKRTIIAWMNNWQY-GG  504
                                     +D+G DFYA   FN  P  +R +I WM NW     
Sbjct  240  --------------------GEFLRLDYGFDFYAPQTFND-PDGRRILIGWMGNWDSEAN  278

Query  505  VIPTDPWRSAMSVPRQLALKTINGKATIVQEP  536
              PT  W  AMS+PR+L LK   GK  +VQ P
Sbjct  279  DYPTKGWAGAMSLPRELTLKDTGGK--LVQWP  308


>CDD:462408 pfam08244, Glyco_hydro_32C, Glycosyl hydrolases family 32 C terminal. 
 This domain corresponds to the C terminal domain of 
glycosyl hydrolase family 32. It forms a beta sandwich module.
Length=162

 Score = 139 bits (353),  Expect = 6e-39, Method: Composition-based stats.
 Identities = 55/136 (40%), Positives = 72/136 (53%), Gaps = 8/136 (6%)

Query  565  GKTLELELTFSSRQSPAAGKAEFGVAVAATKDYSHETRVGYNFATQQVFVDRTRS---GD  621
            G  LELEL F      ++   EFG+ V A+     ET +GY+ + + +FVDRT+S   GD
Sbjct  32   GGALELELEFEL---SSSSAGEFGLKVRASPG-EEETTIGYDPSRESLFVDRTKSSYGGD  87

Query  622  TSFDGTFASVYHAPLAPSADGTVSLRVLVDWSSVEVFGGNGEATITSQIFPASDAVYGRL  681
              FD TF    HA   P  D  + LR+ VD SSVEVF  +G   +TS+I+P  D+    L
Sbjct  88   VDFDPTFGER-HAAPVPPEDEKLKLRIFVDRSSVEVFVNDGRTVLTSRIYPREDSTGISL  146

Query  682  FSTDGETRDVKLRVKE  697
            FS  G      L V E
Sbjct  147  FSNGGSATVSSLTVWE  162



Lambda      K        H        a         alpha
   0.316    0.133    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 899621900


Query= TCONS_00037109

Length=250


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.143    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00037115

Length=248


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.141    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00037110

Length=185


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00037112

Length=572


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00037111

Length=568


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 711347728


Query= TCONS_00037113

Length=147


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 118981096


Query= TCONS_00042874

Length=248


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00037116

Length=248


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00042875

Length=178


***** No hits found *****



Lambda      K        H        a         alpha
   0.333    0.145    0.495    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165913262


Query= TCONS_00037114

Length=248


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.143    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00042876

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0736    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00042877

Length=248


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.140    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00037117

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.142    0.460    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00042878

Length=197


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00037118

Length=106


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.137    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00037120

Length=184


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00042879

Length=283


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00037119

Length=572


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00037122

Length=506


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00037121

Length=515


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00042880

Length=292


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00042881

Length=515


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00042883

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.498    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00042885

Length=292


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00042884

Length=351


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00037123

Length=566


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00037124

Length=342


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00037125

Length=333


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00042887

Length=283


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00037126

Length=506


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00042888

Length=559


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 697897876


Query= TCONS_00037127

Length=233


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.143    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 246078268


Query= TCONS_00037128

Length=488


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 601084202


Query= TCONS_00037129

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear clus...  55.4    8e-11


>CDD:395120 pfam00172, Zn_clus, Fungal Zn(2)-Cys(6) binuclear cluster domain. 
 
Length=39

 Score = 55.4 bits (134),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 25/38 (66%), Gaps = 0/38 (0%)

Query  11  ACDTCRSRRVKCDGERPFCAPCRTRGLNCFYQQLPERP  48
           ACD CR R+VKCDG++P C+ C   GL C Y +  ++ 
Sbjct  2   ACDNCRKRKVKCDGKKPACSRCIKNGLECTYSRKSKKS  39



Lambda      K        H        a         alpha
   0.323    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684448024


Query= TCONS_00037130

Length=463


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00037131

Length=525


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 657104644


Query= TCONS_00042890

Length=220


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 224608352


Query= TCONS_00042891

Length=483


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 593513872


Query= TCONS_00037132

Length=287


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 324063456


Query= TCONS_00037133

Length=393


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0724    0.140     1.90     42.6     43.6 

Effective search space used: 472215968


Query= TCONS_00042892

Length=504


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00037135

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00037134

Length=739


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.126    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 938573040


Query= TCONS_00037136

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.117    0.305    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00042893

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:310354 pfam05686, Glyco_transf_90, Glycosyl transferase famil...  62.5    1e-11


>CDD:310354 pfam05686, Glyco_transf_90, Glycosyl transferase family 90.  
This family of glycosyl transferases are specifically (mannosyl) 
glucuronoxylomannan/galactoxylomannan -beta 1,2-xylosyltransferases, 
EC:2.4.2.-.
Length=396

 Score = 62.5 bits (152),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 90/243 (37%), Gaps = 51/243 (21%)

Query  22   LMPHFAFWAWPLKYIGSMHRALTAITEIETKQTFQAKIPQAVWRGTPWFNDVQNHDLRKR  81
            + P ++FW WP   IG        + E  T+  ++ + P A WRG P    V   + R  
Sbjct  122  VFPDWSFWGWPEVNIGRWDLLRKDLKEGNTRVKWEDREPYAYWRGNP---SV--AETRLE  176

Query  82   LIR--VTTGKPW-ADVQSLKWETNGQTASNGLAIEDFCRYKYIIYTEGVTYSGRLLFHQA  138
            L++   +  + W A + +  W+T  +      ++ D C +KY IY EGV +S  L +  A
Sbjct  177  LVKCNRSNPEDWDARLTNQDWDTEYRPGFKHSSLVDQCTHKYKIYIEGVAWSVSLKYILA  236

Query  139  CRSIILTPPMAWMLHTTHLVRPVFSSALLQTTPSWGPTNQSDRIQRAWPTDLSAEDANLV  198
            C S++L     +           F   L                   WP          +
Sbjct  237  CDSLVLHVGPEYYDF--------FYRGLKP-------------WVHYWP----------I  265

Query  199  MVSPDWSDLEATIAWLEDHPTMAEGIADR-----QRQLFHDGGYHSPAAEACYWRALIRG  253
                D  DL+  + W   H   A+ IA+R     +  L  D  Y        Y   L+  
Sbjct  266  KSDDDCRDLKEAVDWGNAHDDEAQKIAERGSEFIRENLKMDDVY-------DYMFHLLTE  318

Query  254  WSK  256
            ++K
Sbjct  319  YAK  321



Lambda      K        H        a         alpha
   0.320    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00042894

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:310354 pfam05686, Glyco_transf_90, Glycosyl transferase famil...  62.5    1e-11


>CDD:310354 pfam05686, Glyco_transf_90, Glycosyl transferase family 90.  
This family of glycosyl transferases are specifically (mannosyl) 
glucuronoxylomannan/galactoxylomannan -beta 1,2-xylosyltransferases, 
EC:2.4.2.-.
Length=396

 Score = 62.5 bits (152),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 90/243 (37%), Gaps = 51/243 (21%)

Query  22   LMPHFAFWAWPLKYIGSMHRALTAITEIETKQTFQAKIPQAVWRGTPWFNDVQNHDLRKR  81
            + P ++FW WP   IG        + E  T+  ++ + P A WRG P    V   + R  
Sbjct  122  VFPDWSFWGWPEVNIGRWDLLRKDLKEGNTRVKWEDREPYAYWRGNP---SV--AETRLE  176

Query  82   LIR--VTTGKPW-ADVQSLKWETNGQTASNGLAIEDFCRYKYIIYTEGVTYSGRLLFHQA  138
            L++   +  + W A + +  W+T  +      ++ D C +KY IY EGV +S  L +  A
Sbjct  177  LVKCNRSNPEDWDARLTNQDWDTEYRPGFKHSSLVDQCTHKYKIYIEGVAWSVSLKYILA  236

Query  139  CRSIILTPPMAWMLHTTHLVRPVFSSALLQTTPSWGPTNQSDRIQRAWPTDLSAEDANLV  198
            C S++L     +           F   L                   WP          +
Sbjct  237  CDSLVLHVGPEYYDF--------FYRGLKP-------------WVHYWP----------I  265

Query  199  MVSPDWSDLEATIAWLEDHPTMAEGIADR-----QRQLFHDGGYHSPAAEACYWRALIRG  253
                D  DL+  + W   H   A+ IA+R     +  L  D  Y        Y   L+  
Sbjct  266  KSDDDCRDLKEAVDWGNAHDDEAQKIAERGSEFIRENLKMDDVY-------DYMFHLLTE  318

Query  254  WSK  256
            ++K
Sbjct  319  YAK  321



Lambda      K        H        a         alpha
   0.320    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00042895

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:310354 pfam05686, Glyco_transf_90, Glycosyl transferase famil...  62.5    1e-11


>CDD:310354 pfam05686, Glyco_transf_90, Glycosyl transferase family 90.  
This family of glycosyl transferases are specifically (mannosyl) 
glucuronoxylomannan/galactoxylomannan -beta 1,2-xylosyltransferases, 
EC:2.4.2.-.
Length=396

 Score = 62.5 bits (152),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 90/243 (37%), Gaps = 51/243 (21%)

Query  22   LMPHFAFWAWPLKYIGSMHRALTAITEIETKQTFQAKIPQAVWRGTPWFNDVQNHDLRKR  81
            + P ++FW WP   IG        + E  T+  ++ + P A WRG P    V   + R  
Sbjct  122  VFPDWSFWGWPEVNIGRWDLLRKDLKEGNTRVKWEDREPYAYWRGNP---SV--AETRLE  176

Query  82   LIR--VTTGKPW-ADVQSLKWETNGQTASNGLAIEDFCRYKYIIYTEGVTYSGRLLFHQA  138
            L++   +  + W A + +  W+T  +      ++ D C +KY IY EGV +S  L +  A
Sbjct  177  LVKCNRSNPEDWDARLTNQDWDTEYRPGFKHSSLVDQCTHKYKIYIEGVAWSVSLKYILA  236

Query  139  CRSIILTPPMAWMLHTTHLVRPVFSSALLQTTPSWGPTNQSDRIQRAWPTDLSAEDANLV  198
            C S++L     +           F   L                   WP          +
Sbjct  237  CDSLVLHVGPEYYDF--------FYRGLKP-------------WVHYWP----------I  265

Query  199  MVSPDWSDLEATIAWLEDHPTMAEGIADR-----QRQLFHDGGYHSPAAEACYWRALIRG  253
                D  DL+  + W   H   A+ IA+R     +  L  D  Y        Y   L+  
Sbjct  266  KSDDDCRDLKEAVDWGNAHDDEAQKIAERGSEFIRENLKMDDVY-------DYMFHLLTE  318

Query  254  WSK  256
            ++K
Sbjct  319  YAK  321



Lambda      K        H        a         alpha
   0.320    0.132    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 314389920


Query= TCONS_00037137

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461697 pfam05630, NPP1, Necrosis inducing protein (NPP1). Thi...  169     3e-55


>CDD:461697 pfam05630, NPP1, Necrosis inducing protein (NPP1).  This family 
consists of several NPP1 like necrosis inducing proteins 
from oomycetes, fungi and bacteria. Infiltration of NPP1 into 
leaves of Arabidopsis thaliana plants result in transcript 
accumulation of pathogenesis-related (PR) genes, production 
of ROS and ethylene, callose apposition, and HR-like cell death.
Length=198

 Score = 169 bits (431),  Expect = 3e-55, Method: Composition-based stats.
 Identities = 64/134 (48%), Positives = 79/134 (59%), Gaps = 7/134 (5%)

Query  1    MYSWYFPKDEPST-GLGHRHDWEGVIVWLSSSTSTAADNVVAVCPSAHGGWDCST---DG  56
            MY+WYFPKD+P + G GHRHDWE V+VW+ +        ++ V  SAHGG+   T     
Sbjct  66   MYAWYFPKDQPVSIGGGHRHDWEHVVVWVDNPALENP-TILGVSASAHGGYKKYTPPASS  124

Query  57   YTLSGTKPLIKYYSIWPVDHQCGLT-STVGGTQPLIAWESLPTVAQTALEDTDFGD-ANV  114
              L GT P I Y+   P  H    T +  G TQPLI W+ LP  A+ AL + DFG  ANV
Sbjct  125  VRLDGTHPKIVYHKDGPGTHALRFTNADDGETQPLIGWDQLPDAARDALNNADFGSAANV  184

Query  115  PFKNANFASNLAKA  128
            PFK+ NF SNL KA
Sbjct  185  PFKDGNFQSNLDKA  198



Lambda      K        H        a         alpha
   0.316    0.131    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00042897

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00042896

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00037139

Length=299


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00037138

Length=248


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00037140

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00037141

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.140    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00037142

Length=23


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.125    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 75925852


Query= TCONS_00042898

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00042900

Length=48


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81434192


Query= TCONS_00042901

Length=167


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147098356


Query= TCONS_00037143

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domai...  124     1e-33
CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase. This famil...  62.7    2e-11


>CDD:398739 pfam05199, GMC_oxred_C, GMC oxidoreductase.  This domain found 
associated with pfam00732.
Length=143

 Score = 124 bits (312),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 53/147 (36%), Positives = 72/147 (49%), Gaps = 15/147 (10%)

Query  528  GTVELRSADPRDTPIINFNSFDSGVTDNGADEKDLQAVYESMLFSRKIFNDLVPLDGKFE  587
            G V L S+DP   P+I+ N           D  DL A+  ++  +R+I      + G   
Sbjct  5    GRVTLSSSDPTGLPVIDPNYLS--------DPADLAALRAALRLARRILAAAGLVLGVEL  56

Query  588  EVWP-----GPNVTSEADLKDFIKREAW-GHHACCTAAIGADEDPNAVLDSDFRVRGVDG  641
               P        VTS+ +L  +I+  A   +H   T  +GAD D  AV+D D RV GVD 
Sbjct  57   TPGPVPEVSDAAVTSDDELLAYIRAAASTSYHPMGTCRMGADPDD-AVVDPDLRVHGVDN  115

Query  642  LRVVDASVFPKIPGWYIALPIYMISEK  668
            LRVVDASVFP  P     L IY ++E+
Sbjct  116  LRVVDASVFPSSPSGNPTLTIYALAER  142


>CDD:366272 pfam00732, GMC_oxred_N, GMC oxidoreductase.  This family of proteins 
bind FAD as a cofactor.
Length=218

 Score = 62.7 bits (153),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 81/283 (29%), Gaps = 90/283 (32%)

Query  149  ILYPRAGTLGGCSAHNAMITIYPYESDWQDLAMLTGNDSWAPHKMRGYFTRLERNRYLPS  208
            ++ P   T+GG S+ N    I    +   + A   G + W       Y  ++E    + +
Sbjct  19   MILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLGVTT  78

Query  209  SLAGHGFDGWLTTSLTQLTLVLEDQKLLSLVIAAATAVGKSLLGMIITTVTGLGEILLRD  268
                                      L   ++ AA       LG  +  V        R+
Sbjct  79   KGIEESP-------------------LNQALLKAAEE-----LGYPVEAVP-------RN  107

Query  269  INNP-------LPTRDQETGLFQIPIAVDVPEYKRTGPRDFLMKTVNSVNKDGSRKYHLD  321
             N         L                     K++  R +L   +           +L 
Sbjct  108  SNGCHYCGFCGLGCPTGA---------------KQSTARTWLRPALER---------NLR  143

Query  322  IQLNTLVTNVRFDTTGERPRAIGVDYLRSQSLYRADPRASKASAGTPGSVNAAKEVILSA  381
            I        +     G   RA+GV              A     G    + AAKEV+++A
Sbjct  144  ILTGAKAEKIIIL--GRGGRAVGV-------------EARDGGGGIKRLITAAKEVVVAA  188

Query  382  GTFNTPQLLKLSGIGPKEELSKWNIRTLVNLPGVGKNLQDRYE  424
            G  NTP LL  SG+G                  VGKNLQ    
Sbjct  189  GALNTPPLLLRSGLGKNPH-------------PVGKNLQLHPV  218



Lambda      K        H        a         alpha
   0.317    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 862752150


Query= TCONS_00037144

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00037145

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain                     75.4    1e-17


>CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain.  
Length=151

 Score = 75.4 bits (186),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 34/122 (28%), Positives = 52/122 (43%), Gaps = 21/122 (17%)

Query  57   LPSEPVTKAIYLID--GSSICLRQAWNLRDFSQDVSWILATCYPETIDRIFVSERVIGPW  114
            +P   V     +ID  G S+     W      + +  IL   YPE + +I +        
Sbjct  49   MPEGQVEGLTVIIDLKGLSL-SNMDWWSISLLKKIIKILQDNYPERLGKILI--------  99

Query  115  AFGLTCVQLCNPPSYFPKMWSMLKKFIDPVTAEKIVMLDPADVYGTLNKYIHHDNIPVQF  174
                      N P  F  +W ++K F+DP T EKIV L  ++    L KYI  + +P ++
Sbjct  100  ---------VNAPWIFNTIWKLIKPFLDPKTREKIVFLKNSNEE-ELEKYIPPEQLPKEY  149

Query  175  GG  176
            GG
Sbjct  150  GG  151



Lambda      K        H        a         alpha
   0.323    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00042902

Length=148


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 120730818


Query= TCONS_00037146

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain                     75.4    1e-17


>CDD:459890 pfam00650, CRAL_TRIO, CRAL/TRIO domain.  
Length=151

 Score = 75.4 bits (186),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 34/122 (28%), Positives = 52/122 (43%), Gaps = 21/122 (17%)

Query  57   LPSEPVTKAIYLID--GSSICLRQAWNLRDFSQDVSWILATCYPETIDRIFVSERVIGPW  114
            +P   V     +ID  G S+     W      + +  IL   YPE + +I +        
Sbjct  49   MPEGQVEGLTVIIDLKGLSL-SNMDWWSISLLKKIIKILQDNYPERLGKILI--------  99

Query  115  AFGLTCVQLCNPPSYFPKMWSMLKKFIDPVTAEKIVMLDPADVYGTLNKYIHHDNIPVQF  174
                      N P  F  +W ++K F+DP T EKIV L  ++    L KYI  + +P ++
Sbjct  100  ---------VNAPWIFNTIWKLIKPFLDPKTREKIVFLKNSNEE-ELEKYIPPEQLPKEY  149

Query  175  GG  176
            GG
Sbjct  150  GG  151



Lambda      K        H        a         alpha
   0.323    0.139    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00042903

Length=40


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.146    0.608    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82237410


Query= TCONS_00042904

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              116     6e-29
CDD:366028 pfam00324, AA_permease, Amino acid permease                86.6    1e-18


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 116 bits (293),  Expect = 6e-29, Method: Composition-based stats.
 Identities = 99/449 (22%), Positives = 198/449 (44%), Gaps = 40/449 (9%)

Query  17   GFTVLFLQPLTNGGPAGAVYGFLFVWAGTASIFVVLSELASMAPTSGGQYHWISMLAPRS  76
            G  +     + +GGPA  V+G++     + ++ +V +EL+S  P SGG Y ++       
Sbjct  16   GSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGGIYVYLENAFG--  73

Query  77   TVKFLSYMSGWLTVIGWQATFATACYLCGTMVQGVAVLTRPNYQPQSWHPTFYFWAIVAF  136
              KF+++++GW     +    A++  +  + +        P+  P +W       AI+  
Sbjct  74   --KFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPDLVPTTWLTYGIAIAILII  128

Query  137  AVSINVVGRNVLPKFEGLILVVHILGFFAILIPL---VSLADIGSAKDVFTEFVNQGGWP  193
               IN+ G     K + ++ ++ +L    ++I L    +     +            GWP
Sbjct  129  FAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFNLLSGEWHTFFPDGWP  188

Query  194  TQGLSFFVGLIGSVFAFVGGDAAVHMSEEIQNAPVVVPRSILLSVLINGSLGFGMLLALL  253
                  F G +G +++F G ++A ++SEE++     VP++I + V+I G L   + +A  
Sbjct  189  ----GVFAGFLGVLWSFTGFESAANVSEEVKKR--NVPKAIFIGVIIVGVLYILVNIAFF  242

Query  254  FCLGDINEALESPTGYPFMHIFYKGTGSLGGAATMASIVIVVCICSATGMMAATSRQFWS  313
              + D   AL S  G     +F    G  G    +  + + +     T ++ A SR  ++
Sbjct  243  GVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGA-SRLLYA  301

Query  314  FSRDRGVPGWRLWSRVSPTTAIPVWSVAVTTVVAVLLALIPIGSAVAFNDLCAMSITGLF  373
             +RD  +P  R +++V+     P+ ++ +T +++++L L+ + S  A+N L ++S  G  
Sbjct  302  LARDGVLPFSRFFAKVNK-FGSPIRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYL  360

Query  374  LSYIMVAVLLLWRRTTGAISLTAGADETVNTIGAKLVWGPFRIPGVWGIVINVFAIIYCV  433
            LSY++  + LL  R                           RIPG W + I  F I++ +
Sbjct  361  LSYLLPIIGLLILRKKR--------------------PDLGRIPGRWPVAI--FGILFSL  398

Query  434  IAIFFSMWPTYSEVTVQTMNFSSVGTVSV  462
              I    +P     T  ++N++ +  V+ 
Sbjct  399  FLIVALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 86.6 bits (215),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 86/375 (23%), Positives = 156/375 (42%), Gaps = 27/375 (7%)

Query  26   LTNGGPAGAVYGFLFVWAGTASIFVVLSELASMAPTSGGQYHWISMLAPRSTVKFLSYMS  85
            L   GPAGA+ G+L        + + L E+++  P SGG Y + S    R     L + +
Sbjct  23   LGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYAS----RFLGPSLGFAT  78

Query  86   GWLTVIGWQATFATACYLCGTMVQGVAVLTRPNYQPQSWHPTFYFWAIVAFAVSINVVGR  145
            GW   + W    A        ++Q   ++    Y    W     F  ++     IN+VG 
Sbjct  79   GWNYWLSWITVLALELTAASILIQFWELVPDIPYL---WVWGAVFLVLL---TIINLVGV  132

Query  146  NVLPKFE---GLILVVHILGFFAILIPLVSLADIGSAKDVFTEFVNQGGW----PTQGLS  198
                + E    LI ++ I+GF  + I L+S  +  +   +F    + GG     P  G  
Sbjct  133  KWYGEAEFWFALIKIIAIIGFIIVGIILLSGGN-PNDGAIFRYLGDNGGKNNFPPGFGKG  191

Query  199  FFVGLIGSVFAFVGGDAAVHMSEEIQNAPVVVPRSILLSVLINGSLGFGMLLALLFCLGD  258
            F    + + FAF G +     + E++N    +P++IL  +          LLA+   +  
Sbjct  192  FISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPW  251

Query  259  INEALE--SPTGYPFMHIFYKGTGSLGGAATMASIVIVVCICSATGMMAATSRQFWSFSR  316
             +  L   S +      IF+K  G  G A  + ++++   + +A   + + SR  +S +R
Sbjct  252  NDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLAR  311

Query  317  DRGVPGW--RLWSRVSPTTAIPVWSVAVTTVVAVLLALIPIGSAVAFNDLCAMSITGLFL  374
            D   P +  ++  R  P  AI V  V     + +      +  A+ FN L A+S     +
Sbjct  312  DGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLAS----LNPAIVFNFLLAISGLSGLI  367

Query  375  SYIMVAVLLL-WRRT  388
             + ++++  L +R+ 
Sbjct  368  VWGLISLSHLRFRKA  382



Lambda      K        H        a         alpha
   0.327    0.140    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 601084202


Query= TCONS_00042905

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              126     3e-32
CDD:366028 pfam00324, AA_permease, Amino acid permease                91.2    4e-20


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 126 bits (319),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 103/467 (22%), Positives = 204/467 (44%), Gaps = 43/467 (9%)

Query  44   FGMLSMLGFSCTILVTWEGFTVLFLQPLTKGGPAGAVYGFLFVWAGTASIFVVLSELASM  103
             G+LS        ++   G  +     +  GGPA  V+G++     + ++ +V +EL+S 
Sbjct  1    LGLLSAFALVIGSVI---GSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSA  57

Query  104  APTSGGQYHWISMLAPRSTVKFLSYMSGWLTVIGWQATFATACYLCGTMVQGVAVLTRPN  163
             P SGG Y ++         KF+++++GW     +    A++  +  + +        P+
Sbjct  58   LPRSGGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPD  110

Query  164  YQPQSWHPTFYFWAIVAFAVSINVVGRNVLPKFEGLILVVHILG--FFAILIPLVSL-AD  220
              P +W       AI+     IN+ G     K + ++ ++ +L      I++ LV+    
Sbjct  111  LVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGG  170

Query  221  IGSAKDVFTEFVNQGGWPTQGLSFFVGLIGSVFAFVGGDAAVHMSEEIQNAPVVVPRSIL  280
              +            GWP      F G +G +++F G ++A ++SEE++     VP++I 
Sbjct  171  GFNLLSGEWHTFFPDGWP----GVFAGFLGVLWSFTGFESAANVSEEVKKR--NVPKAIF  224

Query  281  LSVLINGSLGFGMLLALLFCLGDINEALESPTGYPFMHIFYKGTGSLGGAATMASIVIVV  340
            + V+I G L   + +A    + D   AL S  G     +F    G  G    +  + + +
Sbjct  225  IGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSL  284

Query  341  CICSATGMMAATSRQFWSFSRDRGVPGWRLWSRVSPTTAIPVWSVAVTTVVAVLLALIPI  400
                 T ++ A SR  ++ +RD  +P  R +++V+     P+ ++ +T +++++L L+ +
Sbjct  285  LGAVNTAIVGA-SRLLYALARDGVLPFSRFFAKVNK-FGSPIRAIILTAILSLILLLLFL  342

Query  401  GSAVAFNDLCAMSITGLFLSYIMVAVLLLWRRTTGAISLTAGADETVNTIGAKLVWGPFR  460
             S  A+N L ++S  G  LSY++  + LL  R                           R
Sbjct  343  LSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKR--------------------PDLGR  382

Query  461  IPGVWGIVINVFAIIYCVIAIFFSMWPTYSEVTVQTMNFSSVGTVSV  507
            IPG W + I  F I++ +  I    +P     T  ++N++ +  V+ 
Sbjct  383  IPGRWPVAI--FGILFSLFLIVALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 91.2 bits (227),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 86/375 (23%), Positives = 157/375 (42%), Gaps = 27/375 (7%)

Query  71   LTKGGPAGAVYGFLFVWAGTASIFVVLSELASMAPTSGGQYHWISMLAPRSTVKFLSYMS  130
            L + GPAGA+ G+L        + + L E+++  P SGG Y + S    R     L + +
Sbjct  23   LGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYAS----RFLGPSLGFAT  78

Query  131  GWLTVIGWQATFATACYLCGTMVQGVAVLTRPNYQPQSWHPTFYFWAIVAFAVSINVVGR  190
            GW   + W    A        ++Q   ++    Y    W     F  ++     IN+VG 
Sbjct  79   GWNYWLSWITVLALELTAASILIQFWELVPDIPYL---WVWGAVFLVLL---TIINLVGV  132

Query  191  NVLPKFE---GLILVVHILGFFAILIPLVSLADIGSAKDVFTEFVNQGGW----PTQGLS  243
                + E    LI ++ I+GF  + I L+S  +  +   +F    + GG     P  G  
Sbjct  133  KWYGEAEFWFALIKIIAIIGFIIVGIILLSGGN-PNDGAIFRYLGDNGGKNNFPPGFGKG  191

Query  244  FFVGLIGSVFAFVGGDAAVHMSEEIQNAPVVVPRSILLSVLINGSLGFGMLLALLFCLGD  303
            F    + + FAF G +     + E++N    +P++IL  +          LLA+   +  
Sbjct  192  FISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPW  251

Query  304  INEALE--SPTGYPFMHIFYKGTGSLGGAATMASIVIVVCICSATGMMAATSRQFWSFSR  361
             +  L   S +      IF+K  G  G A  + ++++   + +A   + + SR  +S +R
Sbjct  252  NDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLAR  311

Query  362  DRGVPGW--RLWSRVSPTTAIPVWSVAVTTVVAVLLALIPIGSAVAFNDLCAMSITGLFL  419
            D   P +  ++  R  P  AI V  V     + +      +  A+ FN L A+S     +
Sbjct  312  DGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLAS----LNPAIVFNFLLAISGLSGLI  367

Query  420  SYIMVAVLLL-WRRT  433
             + ++++  L +R+ 
Sbjct  368  VWGLISLSHLRFRKA  382



Lambda      K        H        a         alpha
   0.326    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00042907

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              126     3e-32
CDD:366028 pfam00324, AA_permease, Amino acid permease                91.2    4e-20


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 126 bits (319),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 103/467 (22%), Positives = 204/467 (44%), Gaps = 43/467 (9%)

Query  44   FGMLSMLGFSCTILVTWEGFTVLFLQPLTKGGPAGAVYGFLFVWAGTASIFVVLSELASM  103
             G+LS        ++   G  +     +  GGPA  V+G++     + ++ +V +EL+S 
Sbjct  1    LGLLSAFALVIGSVI---GSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSA  57

Query  104  APTSGGQYHWISMLAPRSTVKFLSYMSGWLTVIGWQATFATACYLCGTMVQGVAVLTRPN  163
             P SGG Y ++         KF+++++GW     +    A++  +  + +        P+
Sbjct  58   LPRSGGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPD  110

Query  164  YQPQSWHPTFYFWAIVAFAVSINVVGRNVLPKFEGLILVVHILG--FFAILIPLVSL-AD  220
              P +W       AI+     IN+ G     K + ++ ++ +L      I++ LV+    
Sbjct  111  LVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGG  170

Query  221  IGSAKDVFTEFVNQGGWPTQGLSFFVGLIGSVFAFVGGDAAVHMSEEIQNAPVVVPRSIL  280
              +            GWP      F G +G +++F G ++A ++SEE++     VP++I 
Sbjct  171  GFNLLSGEWHTFFPDGWP----GVFAGFLGVLWSFTGFESAANVSEEVKKR--NVPKAIF  224

Query  281  LSVLINGSLGFGMLLALLFCLGDINEALESPTGYPFMHIFYKGTGSLGGAATMASIVIVV  340
            + V+I G L   + +A    + D   AL S  G     +F    G  G    +  + + +
Sbjct  225  IGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSL  284

Query  341  CICSATGMMAATSRQFWSFSRDRGVPGWRLWSRVSPTTAIPVWSVAVTTVVAVLLALIPI  400
                 T ++ A SR  ++ +RD  +P  R +++V+     P+ ++ +T +++++L L+ +
Sbjct  285  LGAVNTAIVGA-SRLLYALARDGVLPFSRFFAKVNK-FGSPIRAIILTAILSLILLLLFL  342

Query  401  GSAVAFNDLCAMSITGLFLSYIMVAVLLLWRRTTGAISLTAGADETVNTIGAKLVWGPFR  460
             S  A+N L ++S  G  LSY++  + LL  R                           R
Sbjct  343  LSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKR--------------------PDLGR  382

Query  461  IPGVWGIVINVFAIIYCVIAIFFSMWPTYSEVTVQTMNFSSVGTVSV  507
            IPG W + I  F I++ +  I    +P     T  ++N++ +  V+ 
Sbjct  383  IPGRWPVAI--FGILFSLFLIVALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 91.2 bits (227),  Expect = 4e-20, Method: Composition-based stats.
 Identities = 86/375 (23%), Positives = 157/375 (42%), Gaps = 27/375 (7%)

Query  71   LTKGGPAGAVYGFLFVWAGTASIFVVLSELASMAPTSGGQYHWISMLAPRSTVKFLSYMS  130
            L + GPAGA+ G+L        + + L E+++  P SGG Y + S    R     L + +
Sbjct  23   LGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYAS----RFLGPSLGFAT  78

Query  131  GWLTVIGWQATFATACYLCGTMVQGVAVLTRPNYQPQSWHPTFYFWAIVAFAVSINVVGR  190
            GW   + W    A        ++Q   ++    Y    W     F  ++     IN+VG 
Sbjct  79   GWNYWLSWITVLALELTAASILIQFWELVPDIPYL---WVWGAVFLVLL---TIINLVGV  132

Query  191  NVLPKFE---GLILVVHILGFFAILIPLVSLADIGSAKDVFTEFVNQGGW----PTQGLS  243
                + E    LI ++ I+GF  + I L+S  +  +   +F    + GG     P  G  
Sbjct  133  KWYGEAEFWFALIKIIAIIGFIIVGIILLSGGN-PNDGAIFRYLGDNGGKNNFPPGFGKG  191

Query  244  FFVGLIGSVFAFVGGDAAVHMSEEIQNAPVVVPRSILLSVLINGSLGFGMLLALLFCLGD  303
            F    + + FAF G +     + E++N    +P++IL  +          LLA+   +  
Sbjct  192  FISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPW  251

Query  304  INEALE--SPTGYPFMHIFYKGTGSLGGAATMASIVIVVCICSATGMMAATSRQFWSFSR  361
             +  L   S +      IF+K  G  G A  + ++++   + +A   + + SR  +S +R
Sbjct  252  NDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLAR  311

Query  362  DRGVPGW--RLWSRVSPTTAIPVWSVAVTTVVAVLLALIPIGSAVAFNDLCAMSITGLFL  419
            D   P +  ++  R  P  AI V  V     + +      +  A+ FN L A+S     +
Sbjct  312  DGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLAS----LNPAIVFNFLLAISGLSGLI  367

Query  420  SYIMVAVLLL-WRRT  433
             + ++++  L +R+ 
Sbjct  368  VWGLISLSHLRFRKA  382



Lambda      K        H        a         alpha
   0.326    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00042906

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              76.6    3e-16


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 76.6 bits (189),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 17/225 (8%)

Query  44   FGMLSMLGFSCTILVTWEGFTVLFLQPLTNGGPAGAVYGFLFVWAGTASIFVVLSELASM  103
             G+LS        ++   G  +     + +GGPA  V+G++     + ++ +V +EL+S 
Sbjct  1    LGLLSAFALVIGSVI---GSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSA  57

Query  104  APTSGGQYHWISMLAPRSTVKFLSYMSGWLTVIGWQATFATACYLCGTMVQGVAVLTRPN  163
             P SGG Y ++         KF+++++GW     +    A++  +  + +        P+
Sbjct  58   LPRSGGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPD  110

Query  164  YQPQSWHPTFYFWAIVAFAVSINVVGRNVLPKFEGLILVVHILG--FFAILIPLVSL-AD  220
              P +W       AI+     IN+ G     K + ++ ++ +L      I++ LV+    
Sbjct  111  LVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGG  170

Query  221  IGSAKDVFTEFVNQGGWPTQGLSFFVGLIGSVFAFVGGDAAVHVS  265
              +            GWP      F G +G +++F G ++A +VS
Sbjct  171  GFNLLSGEWHTFFPDGWP----GVFAGFLGVLWSFTGFESAANVS  211



Lambda      K        H        a         alpha
   0.326    0.140    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00042908

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              76.6    3e-16


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 76.6 bits (189),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 17/225 (8%)

Query  44   FGMLSMLGFSCTILVTWEGFTVLFLQPLTNGGPAGAVYGFLFVWAGTASIFVVLSELASM  103
             G+LS        ++   G  +     + +GGPA  V+G++     + ++ +V +EL+S 
Sbjct  1    LGLLSAFALVIGSVI---GSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSA  57

Query  104  APTSGGQYHWISMLAPRSTVKFLSYMSGWLTVIGWQATFATACYLCGTMVQGVAVLTRPN  163
             P SGG Y ++         KF+++++GW     +    A++  +  + +        P+
Sbjct  58   LPRSGGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPD  110

Query  164  YQPQSWHPTFYFWAIVAFAVSINVVGRNVLPKFEGLILVVHILG--FFAILIPLVSL-AD  220
              P +W       AI+     IN+ G     K + ++ ++ +L      I++ LV+    
Sbjct  111  LVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGG  170

Query  221  IGSAKDVFTEFVNQGGWPTQGLSFFVGLIGSVFAFVGGDAAVHVS  265
              +            GWP      F G +G +++F G ++A +VS
Sbjct  171  GFNLLSGEWHTFFPDGWP----GVFAGFLGVLWSFTGFESAANVS  211



Lambda      K        H        a         alpha
   0.326    0.140    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 339227634


Query= TCONS_00037147

Length=467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              117     3e-29
CDD:366028 pfam00324, AA_permease, Amino acid permease                87.4    5e-19


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 117 bits (294),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 100/438 (23%), Positives = 196/438 (45%), Gaps = 40/438 (9%)

Query  7    SGGPAGAVYGFLFVWAGTASIFVVLSELASMAPTSGGQYHWISMLAPRSTVKFLSYMSGW  66
            SGGPA  V+G++     + ++ +V +EL+S  P SGG Y ++         KF+++++GW
Sbjct  27   SGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGGIYVYLENAFG----KFVAFLAGW  82

Query  67   LTVIGWQATFATACYLCGTMVQGVAVLTRPNYQPQSWHPTFYFWAIVAFAVSINVVGRNV  126
                 +    A++  +  + +        P+  P +W       AI+     IN+ G   
Sbjct  83   SNWFAYVLGLASSASVAASYLLS---ALGPDLVPTTWLTYGIAIAILIIFAIINIRGVRE  139

Query  127  LPKFEGLILVVHILG--FFAILIPLVSL-ADIGSAKDVFTEFVNQGGWPTQGLSFFVGLI  183
              K + ++ ++ +L      I++ LV+      +            GWP      F G +
Sbjct  140  SAKIQNILGILKLLLPLILIIILGLVTADGGGFNLLSGEWHTFFPDGWP----GVFAGFL  195

Query  184  GSVFAFVGGDAAVHMSEEIQNAPVVVPRSILLSVLINGSLGFGMLLALLFCLGDINEALE  243
            G +++F G ++A ++SEE++     VP++I + V+I G L   + +A    + D   AL 
Sbjct  196  GVLWSFTGFESAANVSEEVKKR--NVPKAIFIGVIIVGVLYILVNIAFFGVVPDDEIALS  253

Query  244  SPTGYPFMHIFYKGTGSLGGAATMASIVIVVCICSATGMMAATSRQFWSFSRDRGVPGWR  303
            S  G     +F    G  G    +  + + +     T ++ A SR  ++ +RD  +P  R
Sbjct  254  SGLGQVAALLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGA-SRLLYALARDGVLPFSR  312

Query  304  LWSRVSPTTAIPVWSVAVTTVVAVLLALIPIGSAVAFNDLCAMSITGLFLSYIMVAVLLL  363
             +++V+     P+ ++ +T +++++L L+ + S  A+N L ++S  G  LSY++  + LL
Sbjct  313  FFAKVNK-FGSPIRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLL  371

Query  364  WRRTTGAISLTAGADETVNTIGAKLVWGPFRIPGVWGIVINVFAIIYCVIAIFFSMWPTY  423
              R                           RIPG W + I  F I++ +  I    +P  
Sbjct  372  ILRKKR--------------------PDLGRIPGRWPVAI--FGILFSLFLIVALFFPPV  409

Query  424  SEVTVQTMNFSSVGTVSV  441
               T  ++N++ +  V+ 
Sbjct  410  GPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 87.4 bits (217),  Expect = 5e-19, Method: Composition-based stats.
 Identities = 85/373 (23%), Positives = 155/373 (42%), Gaps = 27/373 (7%)

Query  7    SGGPAGAVYGFLFVWAGTASIFVVLSELASMAPTSGGQYHWISMLAPRSTVKFLSYMSGW  66
              GPAGA+ G+L        + + L E+++  P SGG Y + S    R     L + +GW
Sbjct  25   QAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYAS----RFLGPSLGFATGW  80

Query  67   LTVIGWQATFATACYLCGTMVQGVAVLTRPNYQPQSWHPTFYFWAIVAFAVSINVVGRNV  126
               + W    A        ++Q   ++    Y    W     F  ++     IN+VG   
Sbjct  81   NYWLSWITVLALELTAASILIQFWELVPDIPYL---WVWGAVFLVLL---TIINLVGVKW  134

Query  127  LPKFE---GLILVVHILGFFAILIPLVSLADIGSAKDVFTEFVNQGGW----PTQGLSFF  179
              + E    LI ++ I+GF  + I L+S  +  +   +F    + GG     P  G  F 
Sbjct  135  YGEAEFWFALIKIIAIIGFIIVGIILLSGGN-PNDGAIFRYLGDNGGKNNFPPGFGKGFI  193

Query  180  VGLIGSVFAFVGGDAAVHMSEEIQNAPVVVPRSILLSVLINGSLGFGMLLALLFCLGDIN  239
               + + FAF G +     + E++N    +P++IL  +          LLA+   +   +
Sbjct  194  SVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPWND  253

Query  240  EALE--SPTGYPFMHIFYKGTGSLGGAATMASIVIVVCICSATGMMAATSRQFWSFSRDR  297
              L   S +      IF+K  G  G A  + ++++   + +A   + + SR  +S +RD 
Sbjct  254  PGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLARDG  313

Query  298  GVPGW--RLWSRVSPTTAIPVWSVAVTTVVAVLLALIPIGSAVAFNDLCAMSITGLFLSY  355
              P +  ++  R  P  AI V  V     + +      +  A+ FN L A+S     + +
Sbjct  314  LAPKFLKKVDKRGVPLRAILVSMVISLLALLLAS----LNPAIVFNFLLAISGLSGLIVW  369

Query  356  IMVAVLLL-WRRT  367
             ++++  L +R+ 
Sbjct  370  GLISLSHLRFRKA  382



Lambda      K        H        a         alpha
   0.327    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 578206408


Query= TCONS_00042909

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              122     7e-31
CDD:366028 pfam00324, AA_permease, Amino acid permease                90.8    6e-20


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 122 bits (309),  Expect = 7e-31, Method: Composition-based stats.
 Identities = 102/467 (22%), Positives = 204/467 (44%), Gaps = 43/467 (9%)

Query  44   FGMLSMLGFSCTILVTWEGFTVLFLQPLTNGGPAGAVYGFLFVWAGTASIFVVLSELASM  103
             G+LS        ++   G  +     + +GGPA  V+G++     + ++ +V +EL+S 
Sbjct  1    LGLLSAFALVIGSVI---GSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSA  57

Query  104  YVLSGGQYHWISMLAPRSTVKFLSYMSGWLTVIGWQATFATACYLCGTMVQGVAVLTRPN  163
               SGG Y ++         KF+++++GW     +    A++  +  + +        P+
Sbjct  58   LPRSGGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPD  110

Query  164  YQPQSWHPTFYFWAIVAFAVSINVVGRNVLPKFEGLILVVHILG--FFAILIPLVSL-AD  220
              P +W       AI+     IN+ G     K + ++ ++ +L      I++ LV+    
Sbjct  111  LVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGG  170

Query  221  IGSAKDVFTEFVNQGGWPTQGLSFFVGLIGSVFAFVGGDAAVHMSEEIQNAPVVVPRSIL  280
              +            GWP      F G +G +++F G ++A ++SEE++     VP++I 
Sbjct  171  GFNLLSGEWHTFFPDGWP----GVFAGFLGVLWSFTGFESAANVSEEVKKR--NVPKAIF  224

Query  281  LSVLINGSLGFGMLLALLFCLGDINEALESPTGYPFMHIFYKGTGSLGGAATMASIVIVV  340
            + V+I G L   + +A    + D   AL S  G     +F    G  G    +  + + +
Sbjct  225  IGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSL  284

Query  341  CICSATGMMAATSRQFWSFSRDRGVPGWRLWSRVSPTTAIPVWSVAVTTVVAVLLALIPI  400
                 T ++ A SR  ++ +RD  +P  R +++V+     P+ ++ +T +++++L L+ +
Sbjct  285  LGAVNTAIVGA-SRLLYALARDGVLPFSRFFAKVNK-FGSPIRAIILTAILSLILLLLFL  342

Query  401  GSAVAFNDLCAMSITGLFLSYIMVAVLLLWRRTTGAISLTAGADETVNTIGAKLVWGPFR  460
             S  A+N L ++S  G  LSY++  + LL  R                           R
Sbjct  343  LSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKR--------------------PDLGR  382

Query  461  IPGVWGIVINVFAIIYCVIAIFFSMWPTYSEVTVQTMNFSSVGTVSV  507
            IPG W + I  F I++ +  I    +P     T  ++N++ +  V+ 
Sbjct  383  IPGRWPVAI--FGILFSLFLIVALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 90.8 bits (226),  Expect = 6e-20, Method: Composition-based stats.
 Identities = 85/375 (23%), Positives = 156/375 (42%), Gaps = 27/375 (7%)

Query  71   LTNGGPAGAVYGFLFVWAGTASIFVVLSELASMYVLSGGQYHWISMLAPRSTVKFLSYMS  130
            L   GPAGA+ G+L        + + L E+++   +SGG Y + S    R     L + +
Sbjct  23   LGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYAS----RFLGPSLGFAT  78

Query  131  GWLTVIGWQATFATACYLCGTMVQGVAVLTRPNYQPQSWHPTFYFWAIVAFAVSINVVGR  190
            GW   + W    A        ++Q   ++    Y    W     F  ++     IN+VG 
Sbjct  79   GWNYWLSWITVLALELTAASILIQFWELVPDIPYL---WVWGAVFLVLL---TIINLVGV  132

Query  191  NVLPKFE---GLILVVHILGFFAILIPLVSLADIGSAKDVFTEFVNQGGW----PTQGLS  243
                + E    LI ++ I+GF  + I L+S  +  +   +F    + GG     P  G  
Sbjct  133  KWYGEAEFWFALIKIIAIIGFIIVGIILLSGGN-PNDGAIFRYLGDNGGKNNFPPGFGKG  191

Query  244  FFVGLIGSVFAFVGGDAAVHMSEEIQNAPVVVPRSILLSVLINGSLGFGMLLALLFCLGD  303
            F    + + FAF G +     + E++N    +P++IL  +          LLA+   +  
Sbjct  192  FISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPW  251

Query  304  INEALE--SPTGYPFMHIFYKGTGSLGGAATMASIVIVVCICSATGMMAATSRQFWSFSR  361
             +  L   S +      IF+K  G  G A  + ++++   + +A   + + SR  +S +R
Sbjct  252  NDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLAR  311

Query  362  DRGVPGW--RLWSRVSPTTAIPVWSVAVTTVVAVLLALIPIGSAVAFNDLCAMSITGLFL  419
            D   P +  ++  R  P  AI V  V     + +      +  A+ FN L A+S     +
Sbjct  312  DGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLAS----LNPAIVFNFLLAISGLSGLI  367

Query  420  SYIMVAVLLL-WRRT  433
             + ++++  L +R+ 
Sbjct  368  VWGLISLSHLRFRKA  382



Lambda      K        H        a         alpha
   0.326    0.140    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00037148

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              126     3e-32
CDD:366028 pfam00324, AA_permease, Amino acid permease                91.6    3e-20


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 126 bits (319),  Expect = 3e-32, Method: Composition-based stats.
 Identities = 103/467 (22%), Positives = 205/467 (44%), Gaps = 43/467 (9%)

Query  44   FGMLSMLGFSCTILVTWEGFTVLFLQPLTNGGPAGAVYGFLFVWAGTASIFVVLSELASM  103
             G+LS        ++   G  +     + +GGPA  V+G++     + ++ +V +EL+S 
Sbjct  1    LGLLSAFALVIGSVI---GSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSA  57

Query  104  APTSGGQYHWISMLAPRSTVKFLSYMSGWLTVIGWQATFATACYLCGTMVQGVAVLTRPN  163
             P SGG Y ++         KF+++++GW     +    A++  +  + +        P+
Sbjct  58   LPRSGGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPD  110

Query  164  YQPQSWHPTFYFWAIVAFAVSINVVGRNVLPKFEGLILVVHILG--FFAILIPLVSL-AD  220
              P +W       AI+     IN+ G     K + ++ ++ +L      I++ LV+    
Sbjct  111  LVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGG  170

Query  221  IGSAKDVFTEFVNQGGWPTQGLSFFVGLIGSVFAFVGGDAAVHMSEEIQNAPVVVPRSIL  280
              +            GWP      F G +G +++F G ++A ++SEE++     VP++I 
Sbjct  171  GFNLLSGEWHTFFPDGWP----GVFAGFLGVLWSFTGFESAANVSEEVKKR--NVPKAIF  224

Query  281  LSVLINGSLGFGMLLALLFCLGDINEALESPTGYPFMHIFYKGTGSLGGAATMASIVIVV  340
            + V+I G L   + +A    + D   AL S  G     +F    G  G    +  + + +
Sbjct  225  IGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSL  284

Query  341  CICSATGMMAATSRQFWSFSRDRGVPGWRLWSRVSPTTAIPVWSVAVTTVVAVLLALIPI  400
                 T ++ A SR  ++ +RD  +P  R +++V+     P+ ++ +T +++++L L+ +
Sbjct  285  LGAVNTAIVGA-SRLLYALARDGVLPFSRFFAKVNK-FGSPIRAIILTAILSLILLLLFL  342

Query  401  GSAVAFNDLCAMSITGLFLSYIMVAVLLLWRRTTGAISLTAGADETVNTIGAKLVWGPFR  460
             S  A+N L ++S  G  LSY++  + LL  R                           R
Sbjct  343  LSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKR--------------------PDLGR  382

Query  461  IPGVWGIVINVFAIIYCVIAIFFSMWPTYSEVTVQTMNFSSVGTVSV  507
            IPG W + I  F I++ +  I    +P     T  ++N++ +  V+ 
Sbjct  383  IPGRWPVAI--FGILFSLFLIVALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 91.6 bits (228),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 86/375 (23%), Positives = 156/375 (42%), Gaps = 27/375 (7%)

Query  71   LTNGGPAGAVYGFLFVWAGTASIFVVLSELASMAPTSGGQYHWISMLAPRSTVKFLSYMS  130
            L   GPAGA+ G+L        + + L E+++  P SGG Y + S    R     L + +
Sbjct  23   LGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYAS----RFLGPSLGFAT  78

Query  131  GWLTVIGWQATFATACYLCGTMVQGVAVLTRPNYQPQSWHPTFYFWAIVAFAVSINVVGR  190
            GW   + W    A        ++Q   ++    Y    W     F  ++     IN+VG 
Sbjct  79   GWNYWLSWITVLALELTAASILIQFWELVPDIPYL---WVWGAVFLVLL---TIINLVGV  132

Query  191  NVLPKFE---GLILVVHILGFFAILIPLVSLADIGSAKDVFTEFVNQGGW----PTQGLS  243
                + E    LI ++ I+GF  + I L+S  +  +   +F    + GG     P  G  
Sbjct  133  KWYGEAEFWFALIKIIAIIGFIIVGIILLSGGN-PNDGAIFRYLGDNGGKNNFPPGFGKG  191

Query  244  FFVGLIGSVFAFVGGDAAVHMSEEIQNAPVVVPRSILLSVLINGSLGFGMLLALLFCLGD  303
            F    + + FAF G +     + E++N    +P++IL  +          LLA+   +  
Sbjct  192  FISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPW  251

Query  304  INEALE--SPTGYPFMHIFYKGTGSLGGAATMASIVIVVCICSATGMMAATSRQFWSFSR  361
             +  L   S +      IF+K  G  G A  + ++++   + +A   + + SR  +S +R
Sbjct  252  NDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLAR  311

Query  362  DRGVPGW--RLWSRVSPTTAIPVWSVAVTTVVAVLLALIPIGSAVAFNDLCAMSITGLFL  419
            D   P +  ++  R  P  AI V  V     + +      +  A+ FN L A+S     +
Sbjct  312  DGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLAS----LNPAIVFNFLLAISGLSGLI  367

Query  420  SYIMVAVLLL-WRRT  433
             + ++++  L +R+ 
Sbjct  368  VWGLISLSHLRFRKA  382



Lambda      K        H        a         alpha
   0.326    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00037149

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              93.9    3e-22
CDD:366028 pfam00324, AA_permease, Amino acid permease                70.8    2e-14


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 93.9 bits (234),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 60/274 (22%), Positives = 118/274 (43%), Gaps = 17/274 (6%)

Query  3    PTSGGQYHWISMLAPRSTVKFLSYMSGWLTVIGWQATFATACYLCGTMVQGVAVLTRPNY  62
            P SGG Y ++         KF+++++GW     +    A++  +  + +        P+ 
Sbjct  59   PRSGGIYVYLENAFG----KFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPDL  111

Query  63   QPQSWHPTFYFWAIVAFAVSINVVGRNVLPKFEGLILVVHILG--FFAILIPLVSL-ADI  119
             P +W       AI+     IN+ G     K + ++ ++ +L      I++ LV+     
Sbjct  112  VPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGG  171

Query  120  GSAKDVFTEFVNQGGWPTQGLSFFVGLIGSVFAFVGGDAAVHMSEEIQNAPVVVPRSILL  179
             +            GWP      F G +G +++F G ++A ++SEE++     VP++I +
Sbjct  172  FNLLSGEWHTFFPDGWP----GVFAGFLGVLWSFTGFESAANVSEEVKKR--NVPKAIFI  225

Query  180  SVLINGSLGFGMLLALLFCLGDINEALESPTGYPFMHIFYKGTGSLGGAATMASIVIVVC  239
             V+I G L   + +A    + D   AL S  G     +F    G  G    +  + + + 
Sbjct  226  GVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLL  285

Query  240  ICSATGMMAATSRQFWSFSRDRGVPGWRLWSRVR  273
                T ++ A SR  ++ +RD  +P  R +++V 
Sbjct  286  GAVNTAIVGA-SRLLYALARDGVLPFSRFFAKVN  318


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 70.8 bits (174),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 62/273 (23%), Positives = 110/273 (40%), Gaps = 20/273 (7%)

Query  3    PTSGGQYHWISMLAPRSTVKFLSYMSGWLTVIGWQATFATACYLCGTMVQGVAVLTRPNY  62
            P SGG Y + S    R     L + +GW   + W    A        ++Q   ++    Y
Sbjct  57   PVSGGFYTYAS----RFLGPSLGFATGWNYWLSWITVLALELTAASILIQFWELVPDIPY  112

Query  63   QPQSWHPTFYFWAIVAFAVSINVVGRNVLPKFE---GLILVVHILGFFAILIPLVSLADI  119
                W     F  ++     IN+VG     + E    LI ++ I+GF  + I L+S  + 
Sbjct  113  L---WVWGAVFLVLL---TIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGN-  165

Query  120  GSAKDVFTEFVNQGGW----PTQGLSFFVGLIGSVFAFVGGDAAVHMSEEIQNAPVVVPR  175
             +   +F    + GG     P  G  F    + + FAF G +     + E++N    +P+
Sbjct  166  PNDGAIFRYLGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPK  225

Query  176  SILLSVLINGSLGFGMLLALLFCLGDINEALE--SPTGYPFMHIFYKGTGSLGGAATMAS  233
            +IL  +          LLA+   +   +  L   S +      IF+K  G  G A  + +
Sbjct  226  AILQVIWRITIFYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINA  285

Query  234  IVIVVCICSATGMMAATSRQFWSFSRDRGVPGW  266
            +++   + +A   + + SR  +S +RD   P +
Sbjct  286  VILTAALSAANSSLYSGSRMLYSLARDGLAPKF  318



Lambda      K        H        a         alpha
   0.327    0.140    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00037150

Length=418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              95.1    7e-22
CDD:366028 pfam00324, AA_permease, Amino acid permease                67.3    1e-12


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 95.1 bits (237),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 84/387 (22%), Positives = 169/387 (44%), Gaps = 36/387 (9%)

Query  9    KFLSYMSGWLTVIGWQATFATACYLCGTMVQGVAVLTRPNYQPQSWHPTFYFWAIVAFAV  68
            KF+++++GW     +    A++  +  + +        P+  P +W       AI+    
Sbjct  74   KFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPDLVPTTWLTYGIAIAILIIFA  130

Query  69   SINVVGRNVLPKFEGLILVVHILG--FFAILIPLVSL-ADIGSAKDVFTEFVNQGGWPTQ  125
             IN+ G     K + ++ ++ +L      I++ LV+      +            GWP  
Sbjct  131  IINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFNLLSGEWHTFFPDGWP--  188

Query  126  GLSFFVGLIGSVFAFVGGDAAVHMSEEIQNAPVVVPRSILLSVLINGSLGFGMLLALLFC  185
                F G +G +++F G ++A ++SEE++     VP++I + V+I G L   + +A    
Sbjct  189  --GVFAGFLGVLWSFTGFESAANVSEEVKKR--NVPKAIFIGVIIVGVLYILVNIAFFGV  244

Query  186  LGDINEALESPTGYPFMHIFYKGTGSLGGAATMASIVIVVCICSATGMMAATSRQFWSFS  245
            + D   AL S  G     +F    G  G    +  + + +     T ++ A SR  ++ +
Sbjct  245  VPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGA-SRLLYALA  303

Query  246  RDRGVPGWRLWSRVSPTTAIPVWSVAVTTVVAVLLALIPIGSAVAFNDLCAMSITGLFLS  305
            RD  +P  R +++V+     P+ ++ +T +++++L L+ + S  A+N L ++S  G  LS
Sbjct  304  RDGVLPFSRFFAKVNK-FGSPIRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLS  362

Query  306  YIMVAVLLLWRRTTGAISLTAGADETVNTIGAKLVWGPFRIPGVWGIVINVFAIIYCVIA  365
            Y++  + LL  R                           RIPG W + I  F I++ +  
Sbjct  363  YLLPIIGLLILRKKR--------------------PDLGRIPGRWPVAI--FGILFSLFL  400

Query  366  IFFSMWPTYSEVTVQTMNFSSVGTVSV  392
            I    +P     T  ++N++ +  V+ 
Sbjct  401  IVALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 67.3 bits (165),  Expect = 1e-12, Method: Composition-based stats.
 Identities = 71/330 (22%), Positives = 133/330 (40%), Gaps = 23/330 (7%)

Query  1    MLAPRSTVKFLSYMSGWLTVIGWQATFATACYLCGTMVQGVAVLTRPNYQPQSWHPTFYF  60
              A R     L + +GW   + W    A        ++Q   ++    Y    W     F
Sbjct  64   TYASRFLGPSLGFATGWNYWLSWITVLALELTAASILIQFWELVPDIPYL---WVWGAVF  120

Query  61   WAIVAFAVSINVVGRNVLPKFE---GLILVVHILGFFAILIPLVSLADIGSAKDVFTEFV  117
              ++     IN+VG     + E    LI ++ I+GF  + I L+S  +  +   +F    
Sbjct  121  LVLL---TIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGN-PNDGAIFRYLG  176

Query  118  NQGGW----PTQGLSFFVGLIGSVFAFVGGDAAVHMSEEIQNAPVVVPRSILLSVLINGS  173
            + GG     P  G  F    + + FAF G +     + E++N    +P++IL  +     
Sbjct  177  DNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITI  236

Query  174  LGFGMLLALLFCLGDINEALE--SPTGYPFMHIFYKGTGSLGGAATMASIVIVVCICSAT  231
                 LLA+   +   +  L   S +      IF+K  G  G A  + ++++   + +A 
Sbjct  237  FYILSLLAIGLLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAAN  296

Query  232  GMMAATSRQFWSFSRDRGVPGW--RLWSRVSPTTAIPVWSVAVTTVVAVLLALIPIGSAV  289
              + + SR  +S +RD   P +  ++  R  P  AI V  V     + +      +  A+
Sbjct  297  SSLYSGSRMLYSLARDGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLAS----LNPAI  352

Query  290  AFNDLCAMSITGLFLSYIMVAVLLL-WRRT  318
             FN L A+S     + + ++++  L +R+ 
Sbjct  353  VFNFLLAISGLSGLIVWGLISLSHLRFRKA  382



Lambda      K        H        a         alpha
   0.328    0.140    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0748    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00037151

Length=239


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.138    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00037152

Length=64
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase                      53.7    2e-11


>CDD:425475 pfam00122, E1-E2_ATPase, E1-E2 ATPase.  
Length=181

 Score = 53.7 bits (130),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 27/59 (46%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query  6   AMLPESCLVMRGGSLAVVSAPDIVPGDVVHLKAGNKLPADVRFVEVSNDACFDRSILTG  64
           ++LP +  V+R G+   V A ++VPGD+V LK G ++PAD R VE S     D S+LTG
Sbjct  1   SLLPPTATVLRDGTEEEVPADELVPGDIVLLKPGERVPADGRIVEGSAS--VDESLLTG  57



Lambda      K        H        a         alpha
   0.321    0.136    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00042910

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00037153

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83662986


Query= TCONS_00037154

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase. This regio...  305     3e-103
CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal...  116     4e-32 
CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  82.5    3e-17 


>CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase.  This region is found 
commonly in chitin synthases classes I, II and III. Chitin 
a linear homopolymer of GlcNAc residues, it is an important 
component of the cell wall of fungi and is synthesized on 
the cytoplasmic surface of the cell membrane by membrane bound 
chitin synthases.
Length=163

 Score = 305 bits (783),  Expect = 3e-103, Method: Composition-based stats.
 Identities = 88/169 (52%), Positives = 119/169 (70%), Gaps = 6/169 (4%)

Query  108  YYNEDKVLTARTLHGVMQNVRDIVNLKKSEFWNKGGPAWQKIVVCLVFDGIEPCDKNTLD  167
             YNED++L ARTLHGVM+N+  + + K+S+ W   G  W+K+VVC+V DG    +  TLD
Sbjct  1    MYNEDEILLARTLHGVMKNIAHLCSRKRSKTWGPDG--WKKVVVCIVSDGRNKINPRTLD  58

Query  168  VLATIGVYQDGVMKKDVDGRETVAHIFEYTTQLSVTPTQQLVRPQPNDPSNLPPVQMLFC  227
            +LA +GVYQ+G+ K DV+G+   AH+FEYTTQLSV    +       +   + PVQ++FC
Sbjct  59   LLAALGVYQEGIAKNDVNGKPVTAHLFEYTTQLSVDEDLKF----KGNEKGIVPVQIIFC  114

Query  228  LKQKNSKKINSHRWLFNAFSRILNPEICILLDAGTKPGSKSLLALWEAF  276
            LK+KN+KKINSHRW FNAF  +L P +C+LLD GTKPG  S+  LW+AF
Sbjct  115  LKEKNAKKINSHRWFFNAFGPLLQPNVCVLLDVGTKPGPTSIYHLWKAF  163


>CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal.  This 
is the N-terminal domain of Chitin synthase (pfam01644).
Length=70

 Score = 116 bits (292),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 41/78 (53%), Positives = 51/78 (65%), Gaps = 8/78 (10%)

Query  30   KINLVQGSVLSVDYPVPSAIQNAIQAEYRDAEEAFHEEFTHMRYTAATCDPDEFTLRNGY  89
            K+ L  G+++ +D PVPS + NA+    R        EFTHMRYTA TCDPD+FT +NGY
Sbjct  1    KVKLTNGNLV-LDCPVPSRLLNAL--PRRKGSR----EFTHMRYTAVTCDPDDFT-KNGY  52

Query  90   NLRPAMYNRHTELLIAIT  107
             LR A+Y R TEL I IT
Sbjct  53   TLRQALYGRETELFIVIT  70


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 82.5 bits (204),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 65/201 (32%), Positives = 89/201 (44%), Gaps = 29/201 (14%)

Query  242  LFNAFSRI--LNP---EICILLDAGTKPGSKSLLALWEAFYNDKTLGGACGEIH-AMLGR  295
            LF+    +  ++P   E  +++DA TK    SL  +     +D  + G CGE   A   +
Sbjct  187  LFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETKIANKRQ  246

Query  296  GWRNVLNPLVAAQNFEYKISNILDKPLESAFGYVSVLPGAFSAYRYRAIMGRPLEQYFHG  355
             W      + A Q FEY IS+ L K  ES FG V+ LPG FS YR +A  G        G
Sbjct  247  SW------VTAIQVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKG--------G  292

Query  356  DHTLSKRLGKKGIEGM-------NIFKKNMF-LAEDRILCFELVAKAGYKWHLTYVKASK  407
            D      L    I           + KKN+  L EDR L   L+ K   K    +V  + 
Sbjct  293  DGYWVPILASPDIVEHYSENVVDTLHKKNLLLLGEDRYLT-TLMLKTFPKRKTVFVPQAV  351

Query  408  GETDVPEAAPEYISQRRRWLN  428
             +T  P+     +SQRRRW+N
Sbjct  352  CKTIAPDTFKVLLSQRRRWIN  372



Lambda      K        H        a         alpha
   0.322    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00037155

Length=538
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase. This regio...  121     9e-33
CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  81.3    8e-17


>CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase.  This region is found 
commonly in chitin synthases classes I, II and III. Chitin 
a linear homopolymer of GlcNAc residues, it is an important 
component of the cell wall of fungi and is synthesized on 
the cytoplasmic surface of the cell membrane by membrane bound 
chitin synthases.
Length=163

 Score = 121 bits (305),  Expect = 9e-33, Method: Composition-based stats.
 Identities = 34/53 (64%), Positives = 43/53 (81%), Gaps = 0/53 (0%)

Query  1    MLFCLKQKNSKKINSHRWLFNAFSRILNPEICILLDAGTKPGSKSLLALWEAF  53
            ++FCLK+KN+KKINSHRW FNAF  +L P +C+LLD GTKPG  S+  LW+AF
Sbjct  111  IIFCLKEKNAKKINSHRWFFNAFGPLLQPNVCVLLDVGTKPGPTSIYHLWKAF  163


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 81.3 bits (201),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 65/201 (32%), Positives = 89/201 (44%), Gaps = 29/201 (14%)

Query  19   LFNAFSRI--LNP---EICILLDAGTKPGSKSLLALWEAFYNDKTLGGACGEIH-AMLGR  72
            LF+    +  ++P   E  +++DA TK    SL  +     +D  + G CGE   A   +
Sbjct  187  LFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETKIANKRQ  246

Query  73   GWRNVLNPLVAAQNFEYKISNILDKPLESAFGYVSVLPGAFSAYRYRAIMGRPLEQYFHG  132
             W      + A Q FEY IS+ L K  ES FG V+ LPG FS YR +A  G        G
Sbjct  247  SW------VTAIQVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKG--------G  292

Query  133  DHTLSKRLGKKGIEGM-------NIFKKNMF-LAEDRILCFELVAKAGYKWHLTYVKASK  184
            D      L    I           + KKN+  L EDR L   L+ K   K    +V  + 
Sbjct  293  DGYWVPILASPDIVEHYSENVVDTLHKKNLLLLGEDRYLT-TLMLKTFPKRKTVFVPQAV  351

Query  185  GETDVPEAAPEYISQRRRWLN  205
             +T  P+     +SQRRRW+N
Sbjct  352  CKTIAPDTFKVLLSQRRRWIN  372



Lambda      K        H        a         alpha
   0.324    0.138    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 676787502


Query= TCONS_00042911

Length=761
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase. This regio...  305     1e-100
CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal...  116     6e-32 
CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  81.7    1e-16 


>CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase.  This region is found 
commonly in chitin synthases classes I, II and III. Chitin 
a linear homopolymer of GlcNAc residues, it is an important 
component of the cell wall of fungi and is synthesized on 
the cytoplasmic surface of the cell membrane by membrane bound 
chitin synthases.
Length=163

 Score = 305 bits (784),  Expect = 1e-100, Method: Composition-based stats.
 Identities = 88/169 (52%), Positives = 119/169 (70%), Gaps = 6/169 (4%)

Query  108  YYNEDKVLTARTLHGVMQNVRDIVNLKKSEFWNKGGPAWQKIVVCLVFDGIEPCDKNTLD  167
             YNED++L ARTLHGVM+N+  + + K+S+ W   G  W+K+VVC+V DG    +  TLD
Sbjct  1    MYNEDEILLARTLHGVMKNIAHLCSRKRSKTWGPDG--WKKVVVCIVSDGRNKINPRTLD  58

Query  168  VLATIGVYQDGVMKKDVDGRETVAHIFEYTTQLSVTPTQQLVRPQPNDPSNLPPVQMLFC  227
            +LA +GVYQ+G+ K DV+G+   AH+FEYTTQLSV    +       +   + PVQ++FC
Sbjct  59   LLAALGVYQEGIAKNDVNGKPVTAHLFEYTTQLSVDEDLKF----KGNEKGIVPVQIIFC  114

Query  228  LKQKNSKKINSHRWLFNAFSRILNPEICILLDAGTKPGSKSLLALWEAF  276
            LK+KN+KKINSHRW FNAF  +L P +C+LLD GTKPG  S+  LW+AF
Sbjct  115  LKEKNAKKINSHRWFFNAFGPLLQPNVCVLLDVGTKPGPTSIYHLWKAF  163


>CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal.  This 
is the N-terminal domain of Chitin synthase (pfam01644).
Length=70

 Score = 116 bits (294),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 41/78 (53%), Positives = 51/78 (65%), Gaps = 8/78 (10%)

Query  30   KINLVQGSVLSVDYPVPSAIQNAIQAEYRDAEEAFHEEFTHMRYTAATCDPDEFTLRNGY  89
            K+ L  G+++ +D PVPS + NA+    R        EFTHMRYTA TCDPD+FT +NGY
Sbjct  1    KVKLTNGNLV-LDCPVPSRLLNAL--PRRKGSR----EFTHMRYTAVTCDPDDFT-KNGY  52

Query  90   NLRPAMYNRHTELLIAIT  107
             LR A+Y R TEL I IT
Sbjct  53   TLRQALYGRETELFIVIT  70


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 81.7 bits (202),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 65/201 (32%), Positives = 89/201 (44%), Gaps = 29/201 (14%)

Query  242  LFNAFSRI--LNP---EICILLDAGTKPGSKSLLALWEAFYNDKTLGGACGEIH-AMLGR  295
            LF+    +  ++P   E  +++DA TK    SL  +     +D  + G CGE   A   +
Sbjct  187  LFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETKIANKRQ  246

Query  296  GWRNVLNPLVAAQNFEYKISNILDKPLESAFGYVSVLPGAFSAYRYRAIMGRPLEQYFHG  355
             W      + A Q FEY IS+ L K  ES FG V+ LPG FS YR +A  G        G
Sbjct  247  SW------VTAIQVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKG--------G  292

Query  356  DHTLSKRLGKKGIEGM-------NIFKKNMF-LAEDRILCFELVAKAGYKWHLTYVKASK  407
            D      L    I           + KKN+  L EDR L   L+ K   K    +V  + 
Sbjct  293  DGYWVPILASPDIVEHYSENVVDTLHKKNLLLLGEDRYLT-TLMLKTFPKRKTVFVPQAV  351

Query  408  GETDVPEAAPEYISQRRRWLN  428
             +T  P+     +SQRRRW+N
Sbjct  352  CKTIAPDTFKVLLSQRRRWIN  372



Lambda      K        H        a         alpha
   0.323    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 970586384


Query= TCONS_00042912

Length=314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase. This regio...  120     4e-34
CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  82.1    7e-18


>CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase.  This region is found 
commonly in chitin synthases classes I, II and III. Chitin 
a linear homopolymer of GlcNAc residues, it is an important 
component of the cell wall of fungi and is synthesized on 
the cytoplasmic surface of the cell membrane by membrane bound 
chitin synthases.
Length=163

 Score = 120 bits (304),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 34/53 (64%), Positives = 43/53 (81%), Gaps = 0/53 (0%)

Query  1    MLFCLKQKNSKKINSHRWLFNAFSRILNPEICILLDAGTKPGSKSLLALWEAF  53
            ++FCLK+KN+KKINSHRW FNAF  +L P +C+LLD GTKPG  S+  LW+AF
Sbjct  111  IIFCLKEKNAKKINSHRWFFNAFGPLLQPNVCVLLDVGTKPGPTSIYHLWKAF  163


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 82.1 bits (203),  Expect = 7e-18, Method: Composition-based stats.
 Identities = 65/201 (32%), Positives = 89/201 (44%), Gaps = 29/201 (14%)

Query  19   LFNAFSRI--LNP---EICILLDAGTKPGSKSLLALWEAFYNDKTLGGACGEIH-AMLGR  72
            LF+    +  ++P   E  +++DA TK    SL  +     +D  + G CGE   A   +
Sbjct  187  LFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETKIANKRQ  246

Query  73   GWRNVLNPLVAAQNFEYKISNILDKPLESAFGYVSVLPGAFSAYRYRAIMGRPLEQYFHG  132
             W      + A Q FEY IS+ L K  ES FG V+ LPG FS YR +A  G        G
Sbjct  247  SW------VTAIQVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKG--------G  292

Query  133  DHTLSKRLGKKGIEGM-------NIFKKNMF-LAEDRILCFELVAKAGYKWHLTYVKASK  184
            D      L    I           + KKN+  L EDR L   L+ K   K    +V  + 
Sbjct  293  DGYWVPILASPDIVEHYSENVVDTLHKKNLLLLGEDRYLT-TLMLKTFPKRKTVFVPQAV  351

Query  185  GETDVPEAAPEYISQRRRWLN  205
             +T  P+     +SQRRRW+N
Sbjct  352  CKTIAPDTFKVLLSQRRRWIN  372



Lambda      K        H        a         alpha
   0.325    0.139    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 361524286


Query= TCONS_00037156

Length=761
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase. This regio...  305     1e-100
CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal...  116     6e-32 
CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  81.7    1e-16 


>CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase.  This region is found 
commonly in chitin synthases classes I, II and III. Chitin 
a linear homopolymer of GlcNAc residues, it is an important 
component of the cell wall of fungi and is synthesized on 
the cytoplasmic surface of the cell membrane by membrane bound 
chitin synthases.
Length=163

 Score = 305 bits (784),  Expect = 1e-100, Method: Composition-based stats.
 Identities = 88/169 (52%), Positives = 119/169 (70%), Gaps = 6/169 (4%)

Query  108  YYNEDKVLTARTLHGVMQNVRDIVNLKKSEFWNKGGPAWQKIVVCLVFDGIEPCDKNTLD  167
             YNED++L ARTLHGVM+N+  + + K+S+ W   G  W+K+VVC+V DG    +  TLD
Sbjct  1    MYNEDEILLARTLHGVMKNIAHLCSRKRSKTWGPDG--WKKVVVCIVSDGRNKINPRTLD  58

Query  168  VLATIGVYQDGVMKKDVDGRETVAHIFEYTTQLSVTPTQQLVRPQPNDPSNLPPVQMLFC  227
            +LA +GVYQ+G+ K DV+G+   AH+FEYTTQLSV    +       +   + PVQ++FC
Sbjct  59   LLAALGVYQEGIAKNDVNGKPVTAHLFEYTTQLSVDEDLKF----KGNEKGIVPVQIIFC  114

Query  228  LKQKNSKKINSHRWLFNAFSRILNPEICILLDAGTKPGSKSLLALWEAF  276
            LK+KN+KKINSHRW FNAF  +L P +C+LLD GTKPG  S+  LW+AF
Sbjct  115  LKEKNAKKINSHRWFFNAFGPLLQPNVCVLLDVGTKPGPTSIYHLWKAF  163


>CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal.  This 
is the N-terminal domain of Chitin synthase (pfam01644).
Length=70

 Score = 116 bits (294),  Expect = 6e-32, Method: Composition-based stats.
 Identities = 41/78 (53%), Positives = 51/78 (65%), Gaps = 8/78 (10%)

Query  30   KINLVQGSVLSVDYPVPSAIQNAIQAEYRDAEEAFHEEFTHMRYTAATCDPDEFTLRNGY  89
            K+ L  G+++ +D PVPS + NA+    R        EFTHMRYTA TCDPD+FT +NGY
Sbjct  1    KVKLTNGNLV-LDCPVPSRLLNAL--PRRKGSR----EFTHMRYTAVTCDPDDFT-KNGY  52

Query  90   NLRPAMYNRHTELLIAIT  107
             LR A+Y R TEL I IT
Sbjct  53   TLRQALYGRETELFIVIT  70


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 81.7 bits (202),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 65/201 (32%), Positives = 89/201 (44%), Gaps = 29/201 (14%)

Query  242  LFNAFSRI--LNP---EICILLDAGTKPGSKSLLALWEAFYNDKTLGGACGEIH-AMLGR  295
            LF+    +  ++P   E  +++DA TK    SL  +     +D  + G CGE   A   +
Sbjct  187  LFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETKIANKRQ  246

Query  296  GWRNVLNPLVAAQNFEYKISNILDKPLESAFGYVSVLPGAFSAYRYRAIMGRPLEQYFHG  355
             W      + A Q FEY IS+ L K  ES FG V+ LPG FS YR +A  G        G
Sbjct  247  SW------VTAIQVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKG--------G  292

Query  356  DHTLSKRLGKKGIEGM-------NIFKKNMF-LAEDRILCFELVAKAGYKWHLTYVKASK  407
            D      L    I           + KKN+  L EDR L   L+ K   K    +V  + 
Sbjct  293  DGYWVPILASPDIVEHYSENVVDTLHKKNLLLLGEDRYLT-TLMLKTFPKRKTVFVPQAV  351

Query  408  GETDVPEAAPEYISQRRRWLN  428
             +T  P+     +SQRRRW+N
Sbjct  352  CKTIAPDTFKVLLSQRRRWIN  372



Lambda      K        H        a         alpha
   0.323    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 970586384


Query= TCONS_00037157

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00037158

Length=856
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase. This regio...  308     7e-101
CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal...  116     8e-32 
CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  82.5    1e-16 


>CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase.  This region is found 
commonly in chitin synthases classes I, II and III. Chitin 
a linear homopolymer of GlcNAc residues, it is an important 
component of the cell wall of fungi and is synthesized on 
the cytoplasmic surface of the cell membrane by membrane bound 
chitin synthases.
Length=163

 Score = 308 bits (791),  Expect = 7e-101, Method: Composition-based stats.
 Identities = 88/169 (52%), Positives = 119/169 (70%), Gaps = 6/169 (4%)

Query  203  YYNEDKVLTARTLHGVMQNVRDIVNLKKSEFWNKGGPAWQKIVVCLVFDGIEPCDKNTLD  262
             YNED++L ARTLHGVM+N+  + + K+S+ W   G  W+K+VVC+V DG    +  TLD
Sbjct  1    MYNEDEILLARTLHGVMKNIAHLCSRKRSKTWGPDG--WKKVVVCIVSDGRNKINPRTLD  58

Query  263  VLATIGVYQDGVMKKDVDGRETVAHIFEYTTQLSVTPTQQLVRPQPNDPSNLPPVQMLFC  322
            +LA +GVYQ+G+ K DV+G+   AH+FEYTTQLSV    +       +   + PVQ++FC
Sbjct  59   LLAALGVYQEGIAKNDVNGKPVTAHLFEYTTQLSVDEDLKF----KGNEKGIVPVQIIFC  114

Query  323  LKQKNSKKINSHRWLFNAFSRILNPEICILLDAGTKPGSKSLLALWEAF  371
            LK+KN+KKINSHRW FNAF  +L P +C+LLD GTKPG  S+  LW+AF
Sbjct  115  LKEKNAKKINSHRWFFNAFGPLLQPNVCVLLDVGTKPGPTSIYHLWKAF  163


>CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal.  This 
is the N-terminal domain of Chitin synthase (pfam01644).
Length=70

 Score = 116 bits (293),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 41/78 (53%), Positives = 51/78 (65%), Gaps = 8/78 (10%)

Query  125  KINLVQGSVLSVDYPVPSAIQNAIQAEYRDAEEAFHEEFTHMRYTAATCDPDEFTLRNGY  184
            K+ L  G+++ +D PVPS + NA+    R        EFTHMRYTA TCDPD+FT +NGY
Sbjct  1    KVKLTNGNLV-LDCPVPSRLLNAL--PRRKGSR----EFTHMRYTAVTCDPDDFT-KNGY  52

Query  185  NLRPAMYNRHTELLIAIT  202
             LR A+Y R TEL I IT
Sbjct  53   TLRQALYGRETELFIVIT  70


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 82.5 bits (204),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 65/201 (32%), Positives = 89/201 (44%), Gaps = 29/201 (14%)

Query  337  LFNAFSRI--LNP---EICILLDAGTKPGSKSLLALWEAFYNDKTLGGACGEIH-AMLGR  390
            LF+    +  ++P   E  +++DA TK    SL  +     +D  + G CGE   A   +
Sbjct  187  LFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETKIANKRQ  246

Query  391  GWRNVLNPLVAAQNFEYKISNILDKPLESAFGYVSVLPGAFSAYRYRAIMGRPLEQYFHG  450
             W      + A Q FEY IS+ L K  ES FG V+ LPG FS YR +A  G        G
Sbjct  247  SW------VTAIQVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKG--------G  292

Query  451  DHTLSKRLGKKGIEGM-------NIFKKNMF-LAEDRILCFELVAKAGYKWHLTYVKASK  502
            D      L    I           + KKN+  L EDR L   L+ K   K    +V  + 
Sbjct  293  DGYWVPILASPDIVEHYSENVVDTLHKKNLLLLGEDRYLT-TLMLKTFPKRKTVFVPQAV  351

Query  503  GETDVPEAAPEYISQRRRWLN  523
             +T  P+     +SQRRRW+N
Sbjct  352  CKTIAPDTFKVLLSQRRRWIN  372



Lambda      K        H        a         alpha
   0.321    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1092426154


Query= TCONS_00037159

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase. This regio...  305     3e-103
CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal...  116     4e-32 
CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase. Members of...  82.5    3e-17 


>CDD:426363 pfam01644, Chitin_synth_1, Chitin synthase.  This region is found 
commonly in chitin synthases classes I, II and III. Chitin 
a linear homopolymer of GlcNAc residues, it is an important 
component of the cell wall of fungi and is synthesized on 
the cytoplasmic surface of the cell membrane by membrane bound 
chitin synthases.
Length=163

 Score = 305 bits (783),  Expect = 3e-103, Method: Composition-based stats.
 Identities = 88/169 (52%), Positives = 119/169 (70%), Gaps = 6/169 (4%)

Query  108  YYNEDKVLTARTLHGVMQNVRDIVNLKKSEFWNKGGPAWQKIVVCLVFDGIEPCDKNTLD  167
             YNED++L ARTLHGVM+N+  + + K+S+ W   G  W+K+VVC+V DG    +  TLD
Sbjct  1    MYNEDEILLARTLHGVMKNIAHLCSRKRSKTWGPDG--WKKVVVCIVSDGRNKINPRTLD  58

Query  168  VLATIGVYQDGVMKKDVDGRETVAHIFEYTTQLSVTPTQQLVRPQPNDPSNLPPVQMLFC  227
            +LA +GVYQ+G+ K DV+G+   AH+FEYTTQLSV    +       +   + PVQ++FC
Sbjct  59   LLAALGVYQEGIAKNDVNGKPVTAHLFEYTTQLSVDEDLKF----KGNEKGIVPVQIIFC  114

Query  228  LKQKNSKKINSHRWLFNAFSRILNPEICILLDAGTKPGSKSLLALWEAF  276
            LK+KN+KKINSHRW FNAF  +L P +C+LLD GTKPG  S+  LW+AF
Sbjct  115  LKEKNAKKINSHRWFFNAFGPLLQPNVCVLLDVGTKPGPTSIYHLWKAF  163


>CDD:462467 pfam08407, Chitin_synth_1N, Chitin synthase N-terminal.  This 
is the N-terminal domain of Chitin synthase (pfam01644).
Length=70

 Score = 116 bits (292),  Expect = 4e-32, Method: Composition-based stats.
 Identities = 41/78 (53%), Positives = 51/78 (65%), Gaps = 8/78 (10%)

Query  30   KINLVQGSVLSVDYPVPSAIQNAIQAEYRDAEEAFHEEFTHMRYTAATCDPDEFTLRNGY  89
            K+ L  G+++ +D PVPS + NA+    R        EFTHMRYTA TCDPD+FT +NGY
Sbjct  1    KVKLTNGNLV-LDCPVPSRLLNAL--PRRKGSR----EFTHMRYTAVTCDPDDFT-KNGY  52

Query  90   NLRPAMYNRHTELLIAIT  107
             LR A+Y R TEL I IT
Sbjct  53   TLRQALYGRETELFIVIT  70


>CDD:367353 pfam03142, Chitin_synth_2, Chitin synthase.  Members of this 
family are fungal chitin synthase EC:2.4.1.16 enzymes. They 
catalyze chitin synthesis as follows: UDP-N-acetyl-D-glucosamine 
+ {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N) <=> UDP + {(1,4)-(N-acetyl-beta-D-glucosaminyl)}(N+1).
Length=527

 Score = 82.5 bits (204),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 65/201 (32%), Positives = 89/201 (44%), Gaps = 29/201 (14%)

Query  242  LFNAFSRI--LNP---EICILLDAGTKPGSKSLLALWEAFYNDKTLGGACGEIH-AMLGR  295
            LF+    +  ++P   E  +++DA TK    SL  +     +D  + G CGE   A   +
Sbjct  187  LFHQIWNVTGVSPDFYEYVLMVDADTKVFPDSLTRMVACMVDDPEIMGLCGETKIANKRQ  246

Query  296  GWRNVLNPLVAAQNFEYKISNILDKPLESAFGYVSVLPGAFSAYRYRAIMGRPLEQYFHG  355
             W      + A Q FEY IS+ L K  ES FG V+ LPG FS YR +A  G        G
Sbjct  247  SW------VTAIQVFEYYISHHLSKAFESVFGGVTCLPGCFSMYRIKAPKG--------G  292

Query  356  DHTLSKRLGKKGIEGM-------NIFKKNMF-LAEDRILCFELVAKAGYKWHLTYVKASK  407
            D      L    I           + KKN+  L EDR L   L+ K   K    +V  + 
Sbjct  293  DGYWVPILASPDIVEHYSENVVDTLHKKNLLLLGEDRYLT-TLMLKTFPKRKTVFVPQAV  351

Query  408  GETDVPEAAPEYISQRRRWLN  428
             +T  P+     +SQRRRW+N
Sbjct  352  CKTIAPDTFKVLLSQRRRWIN  372



Lambda      K        H        a         alpha
   0.322    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 675273436


Query= TCONS_00042914

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           156     2e-45
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  147     1e-43


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 156 bits (396),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 107/205 (52%), Gaps = 2/205 (1%)

Query  136  CLWREWQRLKNDPSVTLAMLIGNFFEALIIASIFYNLTGDTSSFYYRGALLFMMVLLNAF  195
             L RE+ R   DPS+ L  LI     ALI  ++F NL G+      R  LLF  +L NAF
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNL-GNQQGGLNRPGLLFFSILFNAF  59

Query  196  ASVLEILTLYEK-RTIVEKQSRYAYYHPSAEALSSFIMSLPYKFVNSSLVNLTLYFMSNL  254
            +++  I  ++EK R ++ ++     Y PSA  L+  +  LP   + S +  L +YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  255  RREPGPFFFFLLISTSMMLAMSMFFRWFASLTKTIDQALAPSSIILLALVLYTGFTIPVS  314
                G FF FLL+     LA S    + ++L  + + A     ++LL L+L +GF IP+ 
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  315  YMRGWASWIRWLNPVSYGFEAVMIN  339
             M  W  WI +LNP++Y  EA+  N
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 147 bits (375),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 0/92 (0%)

Query  352  VPSGPGYEDVSRTQRVCSTVGATSGSDVVSGDVFVRSSYGYVNSHRWRNFGIIIAMTVFL  411
            VPSGPGYE+VS   +VC+ VGA  G   VSGD ++ +SYGY  SH WRNFGI+IA  +F 
Sbjct  1    VPSGPGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFF  60

Query  412  AVCHFVTTELVASKRSKGEVLVFRRGSAHIAR  443
               + + TE  ++ +SKGEVLVF+RG A   +
Sbjct  61   LALYLIATEYNSAAKSKGEVLVFKRGKAPKLK  92



Lambda      K        H        a         alpha
   0.323    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00042915

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           156     2e-45
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  147     1e-43


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 156 bits (396),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 107/205 (52%), Gaps = 2/205 (1%)

Query  136  CLWREWQRLKNDPSVTLAMLIGNFFEALIIASIFYNLTGDTSSFYYRGALLFMMVLLNAF  195
             L RE+ R   DPS+ L  LI     ALI  ++F NL G+      R  LLF  +L NAF
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNL-GNQQGGLNRPGLLFFSILFNAF  59

Query  196  ASVLEILTLYEK-RTIVEKQSRYAYYHPSAEALSSFIMSLPYKFVNSSLVNLTLYFMSNL  254
            +++  I  ++EK R ++ ++     Y PSA  L+  +  LP   + S +  L +YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  255  RREPGPFFFFLLISTSMMLAMSMFFRWFASLTKTIDQALAPSSIILLALVLYTGFTIPVS  314
                G FF FLL+     LA S    + ++L  + + A     ++LL L+L +GF IP+ 
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  315  YMRGWASWIRWLNPVSYGFEAVMIN  339
             M  W  WI +LNP++Y  EA+  N
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 147 bits (375),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 0/92 (0%)

Query  352  VPSGPGYEDVSRTQRVCSTVGATSGSDVVSGDVFVRSSYGYVNSHRWRNFGIIIAMTVFL  411
            VPSGPGYE+VS   +VC+ VGA  G   VSGD ++ +SYGY  SH WRNFGI+IA  +F 
Sbjct  1    VPSGPGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFF  60

Query  412  AVCHFVTTELVASKRSKGEVLVFRRGSAHIAR  443
               + + TE  ++ +SKGEVLVF+RG A   +
Sbjct  61   LALYLIATEYNSAAKSKGEVLVFKRGKAPKLK  92



Lambda      K        H        a         alpha
   0.323    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00037160

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           156     2e-45
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  147     1e-43


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 156 bits (396),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 107/205 (52%), Gaps = 2/205 (1%)

Query  136  CLWREWQRLKNDPSVTLAMLIGNFFEALIIASIFYNLTGDTSSFYYRGALLFMMVLLNAF  195
             L RE+ R   DPS+ L  LI     ALI  ++F NL G+      R  LLF  +L NAF
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNL-GNQQGGLNRPGLLFFSILFNAF  59

Query  196  ASVLEILTLYEK-RTIVEKQSRYAYYHPSAEALSSFIMSLPYKFVNSSLVNLTLYFMSNL  254
            +++  I  ++EK R ++ ++     Y PSA  L+  +  LP   + S +  L +YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  255  RREPGPFFFFLLISTSMMLAMSMFFRWFASLTKTIDQALAPSSIILLALVLYTGFTIPVS  314
                G FF FLL+     LA S    + ++L  + + A     ++LL L+L +GF IP+ 
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  315  YMRGWASWIRWLNPVSYGFEAVMIN  339
             M  W  WI +LNP++Y  EA+  N
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 147 bits (375),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 0/92 (0%)

Query  352  VPSGPGYEDVSRTQRVCSTVGATSGSDVVSGDVFVRSSYGYVNSHRWRNFGIIIAMTVFL  411
            VPSGPGYE+VS   +VC+ VGA  G   VSGD ++ +SYGY  SH WRNFGI+IA  +F 
Sbjct  1    VPSGPGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFF  60

Query  412  AVCHFVTTELVASKRSKGEVLVFRRGSAHIAR  443
               + + TE  ++ +SKGEVLVF+RG A   +
Sbjct  61   LALYLIATEYNSAAKSKGEVLVFKRGKAPKLK  92



Lambda      K        H        a         alpha
   0.323    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00042916

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           156     2e-45
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  147     1e-43


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 156 bits (396),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 107/205 (52%), Gaps = 2/205 (1%)

Query  136  CLWREWQRLKNDPSVTLAMLIGNFFEALIIASIFYNLTGDTSSFYYRGALLFMMVLLNAF  195
             L RE+ R   DPS+ L  LI     ALI  ++F NL G+      R  LLF  +L NAF
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNL-GNQQGGLNRPGLLFFSILFNAF  59

Query  196  ASVLEILTLYEK-RTIVEKQSRYAYYHPSAEALSSFIMSLPYKFVNSSLVNLTLYFMSNL  254
            +++  I  ++EK R ++ ++     Y PSA  L+  +  LP   + S +  L +YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  255  RREPGPFFFFLLISTSMMLAMSMFFRWFASLTKTIDQALAPSSIILLALVLYTGFTIPVS  314
                G FF FLL+     LA S    + ++L  + + A     ++LL L+L +GF IP+ 
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  315  YMRGWASWIRWLNPVSYGFEAVMIN  339
             M  W  WI +LNP++Y  EA+  N
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 147 bits (375),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 0/92 (0%)

Query  352  VPSGPGYEDVSRTQRVCSTVGATSGSDVVSGDVFVRSSYGYVNSHRWRNFGIIIAMTVFL  411
            VPSGPGYE+VS   +VC+ VGA  G   VSGD ++ +SYGY  SH WRNFGI+IA  +F 
Sbjct  1    VPSGPGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFF  60

Query  412  AVCHFVTTELVASKRSKGEVLVFRRGSAHIAR  443
               + + TE  ++ +SKGEVLVF+RG A   +
Sbjct  61   LALYLIATEYNSAAKSKGEVLVFKRGKAPKLK  92



Lambda      K        H        a         alpha
   0.323    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00042917

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           156     2e-45
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  147     1e-43


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 156 bits (396),  Expect = 2e-45, Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 107/205 (52%), Gaps = 2/205 (1%)

Query  136  CLWREWQRLKNDPSVTLAMLIGNFFEALIIASIFYNLTGDTSSFYYRGALLFMMVLLNAF  195
             L RE+ R   DPS+ L  LI     ALI  ++F NL G+      R  LLF  +L NAF
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNL-GNQQGGLNRPGLLFFSILFNAF  59

Query  196  ASVLEILTLYEK-RTIVEKQSRYAYYHPSAEALSSFIMSLPYKFVNSSLVNLTLYFMSNL  254
            +++  I  ++EK R ++ ++     Y PSA  L+  +  LP   + S +  L +YFM  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  255  RREPGPFFFFLLISTSMMLAMSMFFRWFASLTKTIDQALAPSSIILLALVLYTGFTIPVS  314
                G FF FLL+     LA S    + ++L  + + A     ++LL L+L +GF IP+ 
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  315  YMRGWASWIRWLNPVSYGFEAVMIN  339
             M  W  WI +LNP++Y  EA+  N
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 147 bits (375),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 0/92 (0%)

Query  352  VPSGPGYEDVSRTQRVCSTVGATSGSDVVSGDVFVRSSYGYVNSHRWRNFGIIIAMTVFL  411
            VPSGPGYE+VS   +VC+ VGA  G   VSGD ++ +SYGY  SH WRNFGI+IA  +F 
Sbjct  1    VPSGPGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFF  60

Query  412  AVCHFVTTELVASKRSKGEVLVFRRGSAHIAR  443
               + + TE  ++ +SKGEVLVF+RG A   +
Sbjct  61   LALYLIATEYNSAAKSKGEVLVFKRGKAPKLK  92



Lambda      K        H        a         alpha
   0.323    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 655590578


Query= TCONS_00037162

Length=61


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80770380


Query= TCONS_00042918

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.138    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00042919

Length=210


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.133    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00037163

Length=351


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 413693740


Query= TCONS_00037164

Length=638


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 803760550


Query= TCONS_00042920

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00037168

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00037165

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00037166

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00037167

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00042922

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0736    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00042921

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00042923

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00037171

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00037170

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00037169

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00042925

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00042924

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00042927

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00042926

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00037172

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00037173

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00037174

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00037176

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00037175

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.443    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00037178

Length=164


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.142    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 145327056


Query= TCONS_00037177

Length=140


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.139    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00037179

Length=116


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83036272


Query= TCONS_00042929

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.140    0.525    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00042930

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459870 pfam00615, RGS, Regulator of G protein signaling domai...  58.4    2e-11


>CDD:459870 pfam00615, RGS, Regulator of G protein signaling domain.  RGS 
family members are GTPase-activating proteins for heterotrimeric 
G-protein alpha-subunits.
Length=117

 Score = 58.4 bits (142),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 56/131 (43%), Gaps = 21/131 (16%)

Query  14   RLDDILNDVAPFPYTLGAFIAFLSERQCLETVEFLLETKRYCRIYHWLEQRTETCEAVRK  73
              D +L D          F  FL      E +EF L  + +       ++     E ++K
Sbjct  1    SFDSLLED----QPGRRLFRQFLESEFSEENLEFWLACEEF-------KKADPDEERLKK  49

Query  74   AHLCGLWNRLINQYIRPSAEREINIPCDIRQRLMQQFHLQEDDPPPPEILDQVVCNVKEL  133
            A        + N+++ P + +EIN+  D+R+ + +  +L+++  P  ++ D+    V EL
Sbjct  50   AK------EIYNEFLAPGSPKEINLDSDLREEIRE--NLEKE--PTRDLFDEAQAEVYEL  99

Query  134  LRGSILIPFLR  144
            +       FL+
Sbjct  100  MEKDSYPRFLK  110



Lambda      K        H        a         alpha
   0.318    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325675712


Query= TCONS_00042931

Length=115


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81149084


Query= TCONS_00037182

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395092 pfam00144, Beta-lactamase, Beta-lactamase. This family...  128     3e-34


>CDD:395092 pfam00144, Beta-lactamase, Beta-lactamase.  This family appears 
to be distantly related to pfam00905 and pfam00768 D-alanyl-D-alanine 
carboxypeptidase.
Length=327

 Score = 128 bits (322),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 86/361 (24%), Positives = 120/361 (33%), Gaps = 63/361 (17%)

Query  9    FQAAIDAGQINGAVICTTDTNGTFVYNTALGQRTLLSGEKLPQQLDDVLYLASATKLVTA  68
             +  +  G I G  +  T  +G  V +   G   L  G  +    D +  +AS TK  TA
Sbjct  5    IRELMAQGGIPGVAVAVTR-DGKVVVDRGGGVADLEGGRPVTA--DTLFRIASVTKTFTA  61

Query  69   IAALQCVEDGLLSLTGDLSSVAPDLAAKQVLTGFSDDGETPILEPPARPVTLEMLLTHSS  128
             A LQ VE G L L   +S   P+ A                  P    +TL  LLTH+S
Sbjct  62   AAVLQLVERGKLDLDDPVSKYLPEFAG-----------------PGKGGITLRDLLTHTS  104

Query  129  GLCYHFLMPHIGQWRDKFAPPQEGQRLSVEELFCYPLGFQPGTGYMYG-PGLDWAGKLVE  187
            GL   F         D            V  L   P  + PGT + Y        G+L+E
Sbjct  105  GLPPLFA-------PDDLEEAAADAAELVRALAALPPVWPPGTRWGYSNTAYGLLGELLE  157

Query  188  RVTGRTLGERMQERIFDPLGINDAQFCPVTREDLRARLVDLNPDDPDGHGRAVLGGSADM  247
            RVTG++  E + +RI  PLG+ D +       D R           D  G    G    +
Sbjct  158  RVTGQSYEELLGDRILRPLGMTDTELGVPEPGDPR-----------DAAGYTGEGPPVRV  206

Query  248  NKRGRGDFGGHGLFMSGESYFKILRSLLVNDGKLLQPKTVDELFEPHLSPEATAAHQAAL  307
                       GL  +     + L +L    G LL    + +L +               
Sbjct  207  PPGPLPAGAYGGLKSTARDLARFLLAL--LGGLLLSAAALAQLTDWLRGGTT--------  256

Query  308  ASPMGVYFRVGLDAGTKLGHSLGGLLTLQDLDGGYGERTLTWGGGMTLFWFIDRKNGLCS  367
                          G + G  LG +L  +    G G       GG   +  +D   GL  
Sbjct  257  -----------GVGGIRAGLGLGWVLADK---TGAGPGLFGHTGGYGTYLAVDPDIGLVV  302

Query  368  V  368
            V
Sbjct  303  V  303



Lambda      K        H        a         alpha
   0.320    0.139    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 495516098


Query= TCONS_00042932

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.127    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00037183

Length=443


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 541397512


Query= TCONS_00037184

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:284851 pfam07519, Tannase, Tannase and feruloyl esterase. Thi...  192     3e-57


>CDD:284851 pfam07519, Tannase, Tannase and feruloyl esterase.  This family 
includes fungal tannase and feruloyl esterase. It also includes 
several bacterial homologs of unknown function.
Length=460

 Score = 192 bits (489),  Expect = 3e-57, Method: Composition-based stats.
 Identities = 108/360 (30%), Positives = 162/360 (45%), Gaps = 33/360 (9%)

Query  59   CNVTVTYSHPGYDDR--ITVETWLPRHWNQRLQATGGGGWRAGRF---VLSQFFMGGAIG  113
            C VT     P       I  E WLP  WN R    GGGG+ AG           +  A+ 
Sbjct  1    CRVT-GNISPVDGSAPQIGFEVWLPSDWNGRFLQVGGGGF-AGNIQTTTGQVGMLPFALA  58

Query  114  EGYATTTTDAGLGDTMPDAWALKSTGNVNLEYLHNLGYRSLNDEAIIAKDLVRSFYGIPP  173
             G+AT  TDAG      DA    S G  N E   +  YR+L+   ++ K L ++FYG  P
Sbjct  59   RGFATAGTDAG-----HDASVDASFGL-NPEARADFAYRALHKTTVVGKALTKAFYGKSP  112

Query  174  AYSYWSGCSQGGRQGLMLAQRYPHAYDGIVASAPAQSWPEFVTAVYYPLLAPLWAGEPS-  232
             YSY+ GCS GGR+GL  AQR+P  YDGI+A APA ++ +    ++    A    G+   
Sbjct  113  DYSYFEGCSDGGREGLTAAQRWPDDYDGIIAGAPAFNFVQ--LQLWGAFSARATQGDDLD  170

Query  233  --PLSCELEFLTAEAVKHCDSQDGIVDGIISDPNNCDFDPFSAVNKTFSCTATGKPMRLT  290
                  EL+ +    +  CD+ DG+ DG++ DP+ C F       +   C+ +     LT
Sbjct  171  GWIPPAELKVIHNAILAACDALDGVADGLVQDPDLCRFAF---AVEVLYCSGSNGDSCLT  227

Query  291  RAAAITAKAAWTGPRTVAGDFLWYGVNPGSDITGLGVAPGQNLT-----------TSPDE  339
             A      A + GP   +G+ L+ G N   +++        +             +  +E
Sbjct  228  AAQIAVVNAIYAGPVNSSGERLYPGWNYAGELSDAAGEEPSDWAKWELGSQVPHYSRAEE  287

Query  340  WLSLFLVKNQSFDATQLSHEEYGTLFHFSVKEYTDVMAANDPDLTAFKKAGGKLLTYHGM  399
             +  F  ++ + D   L  E      +  +   +D++ A DPDL+ F+  GGKL+ YHG 
Sbjct  288  AVRKF-ARDLNLDTLSLKLETLKDRMNTGLVPLSDLIDATDPDLSPFRSRGGKLILYHGT  346



Lambda      K        H        a         alpha
   0.318    0.135    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 486196046


Query= TCONS_00037185

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461417 pfam04749, PLAC8, PLAC8 family. This family includes t...  107     7e-32


>CDD:461417 pfam04749, PLAC8, PLAC8 family.  This family includes the Placenta-specific 
gene 8 protein.
Length=99

 Score = 107 bits (270),  Expect = 7e-32, Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 55/102 (54%), Gaps = 3/102 (3%)

Query  34   WNHSLFDCCSPGSLCFTSCCLPCITFGRTQARVQDPTLQNYSSINSECAIFTVLALGYCQ  93
            W+  LFDC S    C   CC PC+ FGR   R+      N S + +  A F  L      
Sbjct  1    WSTGLFDCFSDCGTCLLGCCCPCVLFGRNAERLD---RGNTSCLLAGFAAFCGLTGCGLG  57

Query  94   WIIQTIRRSEMRQKHGIEGSCPGDCCVTFWCGCCALIQEEKE  135
            WI   ++R ++R+K+GIEGS  GDCCV   C CCAL QE +E
Sbjct  58   WIYSCLQRGKIREKYGIEGSPCGDCCVHCCCPCCALCQEYRE  99



Lambda      K        H        a         alpha
   0.323    0.136    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00042933

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            100     7e-24


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 100 bits (251),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 148/376 (39%), Gaps = 33/376 (9%)

Query  46   LVLMTATIAFCSSIYTAAIPS-ISHAYGCSSTVATLGITTFLLGFASGPLLFAPLSEVWG  104
            L L     A   S+   A+P  ++   G S T   L +T F LG+A    L   LS+ +G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  105  RNTIFRVVLGLFVLFQIGCALAPNVASMIVFRFFSGFFGSPTVTNSGGSITDIWPQDNRS  164
            R  +  + L LF L  +    A ++  ++V R   G         +   I D +P + R 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  165  VPLALFSAASFLGPVIAPTVGGFICQYTSWRWNFWVVLILSGVCYGAMMVFLPETYSHKL  224
              L L SA   LG  + P +GG +     WR  F ++ ILS +   A+++ LP       
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLA--AVLLLLPRP-----  173

Query  225  LMDKKRCMPGYSPAKQPPVKEMLYTTLTRPWLMLFTEPILFLLSLYMALVYGILYLDFTA  284
                         +K+P   E    +L   W  L  +P+L+L  L   L++G  +     
Sbjct  174  ----------PPESKRPKPAEEARLSLIVAWKALLRDPVLWL--LLALLLFGFAFFGLLT  221

Query  285  YPVVYRETRGWSASIAGLSFLGICVGMAIATLISPYVNRIHGIYVRRLGGPQPEARLPHL  344
            Y  +Y+E  G SA +AGL      +  AI  L+        G    RLG      RL   
Sbjct  222  YLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLL-------GRLSDRLG---RRRRLLLA  271

Query  345  IVISWLIPVSLFWFAWTASPPTHWISGIVAGVPFGFGLILLFLGITSYLTDCYGSFGASA  404
            +++  L  + L   + T S     ++ ++ G  FG     L   ++            +A
Sbjct  272  LLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPK---EERGTA  328

Query  405  LAANAVLRSLFGAVFP  420
                    SL GA+ P
Sbjct  329  SGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 590476040


Query= TCONS_00042934

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            85.2    3e-19


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 85.2 bits (211),  Expect = 3e-19, Method: Composition-based stats.
 Identities = 74/285 (26%), Positives = 118/285 (41%), Gaps = 20/285 (7%)

Query  1    MTATIAFCSSIYTAAIPS-ISHAYGCSSTVATLGITTFLLGFASGPLLFAPLSEVWGRNT  59
                 A   S+   A+P  ++   G S T   L +T F LG+A    L   LS+ +GR  
Sbjct  4    AAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRR  63

Query  60   IFRVVLGLFVLFQIGCALAPNVASMIVFRFFSGFFGSPTVTNSGGSITDIWPQDNRSVPL  119
            +  + L LF L  +    A ++  ++V R   G         +   I D +P + R   L
Sbjct  64   VLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRAL  123

Query  120  ALFSAASFLGPVIAPTVGGFICQYTSWRWNFWVVLILSGVCYGAMMVFLPETYSHKLLMD  179
             L SA   LG  + P +GG +     WR  F ++ ILS +   A+++ LP          
Sbjct  124  GLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLA--AVLLLLPRP--------  173

Query  180  KKRCMPGYSPAKQPPVKEMLYTTLTRPWLMLFTEPILFLLSLYMALVYGILYLDFTAYPV  239
                      +K+P   E    +L   W  L  +P+L+L  L   L++G  +     Y  
Sbjct  174  -------PPESKRPKPAEEARLSLIVAWKALLRDPVLWL--LLALLLFGFAFFGLLTYLP  224

Query  240  VYRETRGWSASIAGLSFLGICVGMAIATLISPYVNRIHGIYLVLV  284
            +Y+E  G SA +AGL      +  AI  L+   ++   G    L+
Sbjct  225  LYQEVLGLSALLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLL  269



Lambda      K        H        a         alpha
   0.329    0.143    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 391784028


Query= TCONS_00037187

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            88.2    7e-20


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 88.2 bits (219),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 90/364 (25%), Positives = 143/364 (39%), Gaps = 32/364 (9%)

Query  9    SSIYTAAIPSISHAYGCSSTVATLGITTFLLGFASGPLLFAPLSEVWGRNTIFRVVLGLF  68
            S +  A    ++   G S T   L +T F LG+A    L   LS+ +GR  +  + L LF
Sbjct  13   SLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLF  72

Query  69   VLFQIGCALAPNVASMIVFRFFSGFFGSPTVTNSGGSITDIWPQDNRSVPLALFSAASFL  128
             L  +    A ++  ++V R   G         +   I D +P + R   L L SA   L
Sbjct  73   ALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGL  132

Query  129  GPVIAPTVGGFICQYTSWRWNFWVVLILSGVCYGAMMVFLPETYSHKLLMDKKRCMPGYS  188
            G  + P +GG +     WR  F ++ ILS +   A+++ LP                   
Sbjct  133  GAALGPLLGGLLASLFGWRAAFLILAILSLLA--AVLLLLPRP---------------PP  175

Query  189  PAKQPPVKEMLYTTLTRPWLMLFTEPILFLLSLYMALVYGILYLDFTAYPVVYRETRGWS  248
             +K+P   E    +L   W  L  +P+L+L  L   L++G  +     Y  +Y+E  G S
Sbjct  176  ESKRPKPAEEARLSLIVAWKALLRDPVLWL--LLALLLFGFAFFGLLTYLPLYQEVLGLS  233

Query  249  ASIAGLSFLGICVGMAIATLISPYVNRIHGIYVRRLGGPQPEARLPHLIVISWLIPVSLF  308
            A +AGL      +  AI  L+        G    RLG      RL   +++  L  + L 
Sbjct  234  ALLAGLLLGLGGLLGAIGRLLL-------GRLSDRLG---RRRRLLLALLLLILAALGLL  283

Query  309  WFAWTASPPTHWISGIVAGVPFGFGLILLFLGITSYLTDCYGSFGASALAANAVLRSLFG  368
              + T S     ++ ++ G  FG     L   ++            +A        SL G
Sbjct  284  LLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPK---EERGTASGLYNTAGSLGG  340

Query  369  AVFP  372
            A+ P
Sbjct  341  ALGP  344



Lambda      K        H        a         alpha
   0.329    0.142    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00042936

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            88.2    7e-20


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 88.2 bits (219),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 90/364 (25%), Positives = 143/364 (39%), Gaps = 32/364 (9%)

Query  9    SSIYTAAIPSISHAYGCSSTVATLGITTFLLGFASGPLLFAPLSEVWGRNTIFRVVLGLF  68
            S +  A    ++   G S T   L +T F LG+A    L   LS+ +GR  +  + L LF
Sbjct  13   SLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLF  72

Query  69   VLFQIGCALAPNVASMIVFRFFSGFFGSPTVTNSGGSITDIWPQDNRSVPLALFSAASFL  128
             L  +    A ++  ++V R   G         +   I D +P + R   L L SA   L
Sbjct  73   ALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGL  132

Query  129  GPVIAPTVGGFICQYTSWRWNFWVVLILSGVCYGAMMVFLPETYSHKLLMDKKRCMPGYS  188
            G  + P +GG +     WR  F ++ ILS +   A+++ LP                   
Sbjct  133  GAALGPLLGGLLASLFGWRAAFLILAILSLLA--AVLLLLPRP---------------PP  175

Query  189  PAKQPPVKEMLYTTLTRPWLMLFTEPILFLLSLYMALVYGILYLDFTAYPVVYRETRGWS  248
             +K+P   E    +L   W  L  +P+L+L  L   L++G  +     Y  +Y+E  G S
Sbjct  176  ESKRPKPAEEARLSLIVAWKALLRDPVLWL--LLALLLFGFAFFGLLTYLPLYQEVLGLS  233

Query  249  ASIAGLSFLGICVGMAIATLISPYVNRIHGIYVRRLGGPQPEARLPHLIVISWLIPVSLF  308
            A +AGL      +  AI  L+        G    RLG      RL   +++  L  + L 
Sbjct  234  ALLAGLLLGLGGLLGAIGRLLL-------GRLSDRLG---RRRRLLLALLLLILAALGLL  283

Query  309  WFAWTASPPTHWISGIVAGVPFGFGLILLFLGITSYLTDCYGSFGASALAANAVLRSLFG  368
              + T S     ++ ++ G  FG     L   ++            +A        SL G
Sbjct  284  LLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPK---EERGTASGLYNTAGSLGG  340

Query  369  AVFP  372
            A+ P
Sbjct  341  ALGP  344



Lambda      K        H        a         alpha
   0.329    0.142    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00042935

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            100     7e-24


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 100 bits (251),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 148/376 (39%), Gaps = 33/376 (9%)

Query  46   LVLMTATIAFCSSIYTAAIPS-ISHAYGCSSTVATLGITTFLLGFASGPLLFAPLSEVWG  104
            L L     A   S+   A+P  ++   G S T   L +T F LG+A    L   LS+ +G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  105  RNTIFRVVLGLFVLFQIGCALAPNVASMIVFRFFSGFFGSPTVTNSGGSITDIWPQDNRS  164
            R  +  + L LF L  +    A ++  ++V R   G         +   I D +P + R 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  165  VPLALFSAASFLGPVIAPTVGGFICQYTSWRWNFWVVLILSGVCYGAMMVFLPETYSHKL  224
              L L SA   LG  + P +GG +     WR  F ++ ILS +   A+++ LP       
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLA--AVLLLLPRP-----  173

Query  225  LMDKKRCMPGYSPAKQPPVKEMLYTTLTRPWLMLFTEPILFLLSLYMALVYGILYLDFTA  284
                         +K+P   E    +L   W  L  +P+L+L  L   L++G  +     
Sbjct  174  ----------PPESKRPKPAEEARLSLIVAWKALLRDPVLWL--LLALLLFGFAFFGLLT  221

Query  285  YPVVYRETRGWSASIAGLSFLGICVGMAIATLISPYVNRIHGIYVRRLGGPQPEARLPHL  344
            Y  +Y+E  G SA +AGL      +  AI  L+        G    RLG      RL   
Sbjct  222  YLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLL-------GRLSDRLG---RRRRLLLA  271

Query  345  IVISWLIPVSLFWFAWTASPPTHWISGIVAGVPFGFGLILLFLGITSYLTDCYGSFGASA  404
            +++  L  + L   + T S     ++ ++ G  FG     L   ++            +A
Sbjct  272  LLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPK---EERGTA  328

Query  405  LAANAVLRSLFGAVFP  420
                    SL GA+ P
Sbjct  329  SGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 590476040


Query= TCONS_00037186

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            100     7e-24


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 100 bits (251),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 148/376 (39%), Gaps = 33/376 (9%)

Query  46   LVLMTATIAFCSSIYTAAIPS-ISHAYGCSSTVATLGITTFLLGFASGPLLFAPLSEVWG  104
            L L     A   S+   A+P  ++   G S T   L +T F LG+A    L   LS+ +G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  105  RNTIFRVVLGLFVLFQIGCALAPNVASMIVFRFFSGFFGSPTVTNSGGSITDIWPQDNRS  164
            R  +  + L LF L  +    A ++  ++V R   G         +   I D +P + R 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  165  VPLALFSAASFLGPVIAPTVGGFICQYTSWRWNFWVVLILSGVCYGAMMVFLPETYSHKL  224
              L L SA   LG  + P +GG +     WR  F ++ ILS +   A+++ LP       
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLA--AVLLLLPRP-----  173

Query  225  LMDKKRCMPGYSPAKQPPVKEMLYTTLTRPWLMLFTEPILFLLSLYMALVYGILYLDFTA  284
                         +K+P   E    +L   W  L  +P+L+L  L   L++G  +     
Sbjct  174  ----------PPESKRPKPAEEARLSLIVAWKALLRDPVLWL--LLALLLFGFAFFGLLT  221

Query  285  YPVVYRETRGWSASIAGLSFLGICVGMAIATLISPYVNRIHGIYVRRLGGPQPEARLPHL  344
            Y  +Y+E  G SA +AGL      +  AI  L+        G    RLG      RL   
Sbjct  222  YLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLL-------GRLSDRLG---RRRRLLLA  271

Query  345  IVISWLIPVSLFWFAWTASPPTHWISGIVAGVPFGFGLILLFLGITSYLTDCYGSFGASA  404
            +++  L  + L   + T S     ++ ++ G  FG     L   ++            +A
Sbjct  272  LLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPK---EERGTA  328

Query  405  LAANAVLRSLFGAVFP  420
                    SL GA+ P
Sbjct  329  SGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 590476040


Query= TCONS_00037188

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            88.2    7e-20


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 88.2 bits (219),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 90/364 (25%), Positives = 143/364 (39%), Gaps = 32/364 (9%)

Query  9    SSIYTAAIPSISHAYGCSSTVATLGITTFLLGFASGPLLFAPLSEVWGRNTIFRVVLGLF  68
            S +  A    ++   G S T   L +T F LG+A    L   LS+ +GR  +  + L LF
Sbjct  13   SLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLF  72

Query  69   VLFQIGCALAPNVASMIVFRFFSGFFGSPTVTNSGGSITDIWPQDNRSVPLALFSAASFL  128
             L  +    A ++  ++V R   G         +   I D +P + R   L L SA   L
Sbjct  73   ALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGL  132

Query  129  GPVIAPTVGGFICQYTSWRWNFWVVLILSGVCYGAMMVFLPETYSHKLLMDKKRCMPGYS  188
            G  + P +GG +     WR  F ++ ILS +   A+++ LP                   
Sbjct  133  GAALGPLLGGLLASLFGWRAAFLILAILSLLA--AVLLLLPRP---------------PP  175

Query  189  PAKQPPVKEMLYTTLTRPWLMLFTEPILFLLSLYMALVYGILYLDFTAYPVVYRETRGWS  248
             +K+P   E    +L   W  L  +P+L+L  L   L++G  +     Y  +Y+E  G S
Sbjct  176  ESKRPKPAEEARLSLIVAWKALLRDPVLWL--LLALLLFGFAFFGLLTYLPLYQEVLGLS  233

Query  249  ASIAGLSFLGICVGMAIATLISPYVNRIHGIYVRRLGGPQPEARLPHLIVISWLIPVSLF  308
            A +AGL      +  AI  L+        G    RLG      RL   +++  L  + L 
Sbjct  234  ALLAGLLLGLGGLLGAIGRLLL-------GRLSDRLG---RRRRLLLALLLLILAALGLL  283

Query  309  WFAWTASPPTHWISGIVAGVPFGFGLILLFLGITSYLTDCYGSFGASALAANAVLRSLFG  368
              + T S     ++ ++ G  FG     L   ++            +A        SL G
Sbjct  284  LLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPK---EERGTASGLYNTAGSLGG  340

Query  369  AVFP  372
            A+ P
Sbjct  341  ALGP  344



Lambda      K        H        a         alpha
   0.329    0.142    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00037190

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            88.2    7e-20


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 88.2 bits (219),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 90/364 (25%), Positives = 143/364 (39%), Gaps = 32/364 (9%)

Query  9    SSIYTAAIPSISHAYGCSSTVATLGITTFLLGFASGPLLFAPLSEVWGRNTIFRVVLGLF  68
            S +  A    ++   G S T   L +T F LG+A    L   LS+ +GR  +  + L LF
Sbjct  13   SLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLF  72

Query  69   VLFQIGCALAPNVASMIVFRFFSGFFGSPTVTNSGGSITDIWPQDNRSVPLALFSAASFL  128
             L  +    A ++  ++V R   G         +   I D +P + R   L L SA   L
Sbjct  73   ALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGL  132

Query  129  GPVIAPTVGGFICQYTSWRWNFWVVLILSGVCYGAMMVFLPETYSHKLLMDKKRCMPGYS  188
            G  + P +GG +     WR  F ++ ILS +   A+++ LP                   
Sbjct  133  GAALGPLLGGLLASLFGWRAAFLILAILSLLA--AVLLLLPRP---------------PP  175

Query  189  PAKQPPVKEMLYTTLTRPWLMLFTEPILFLLSLYMALVYGILYLDFTAYPVVYRETRGWS  248
             +K+P   E    +L   W  L  +P+L+L  L   L++G  +     Y  +Y+E  G S
Sbjct  176  ESKRPKPAEEARLSLIVAWKALLRDPVLWL--LLALLLFGFAFFGLLTYLPLYQEVLGLS  233

Query  249  ASIAGLSFLGICVGMAIATLISPYVNRIHGIYVRRLGGPQPEARLPHLIVISWLIPVSLF  308
            A +AGL      +  AI  L+        G    RLG      RL   +++  L  + L 
Sbjct  234  ALLAGLLLGLGGLLGAIGRLLL-------GRLSDRLG---RRRRLLLALLLLILAALGLL  283

Query  309  WFAWTASPPTHWISGIVAGVPFGFGLILLFLGITSYLTDCYGSFGASALAANAVLRSLFG  368
              + T S     ++ ++ G  FG     L   ++            +A        SL G
Sbjct  284  LLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPK---EERGTASGLYNTAGSLGG  340

Query  369  AVFP  372
            A+ P
Sbjct  341  ALGP  344



Lambda      K        H        a         alpha
   0.329    0.142    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00042937

Length=366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            95.9    9e-23


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 95.9 bits (239),  Expect = 9e-23, Method: Composition-based stats.
 Identities = 72/275 (26%), Positives = 115/275 (42%), Gaps = 19/275 (7%)

Query  43   LIYTAAIPSISHAYGCSSTVATLGITTFLLGFASGPLLFAPLSEVWGRNTIFRVVLGLFV  102
            L+  A    ++   G S T   L +T F LG+A    L   LS+ +GR  +  + L LF 
Sbjct  14   LLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFA  73

Query  103  LFQIGCALAPNVASMIVFRFFSGFFGSPTVTNSGGSITDIWPQDNRSVPLALFSAASFLG  162
            L  +    A ++  ++V R   G         +   I D +P + R   L L SA   LG
Sbjct  74   LGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLG  133

Query  163  PVIAPTVGGFICQYTSWRWNFWVVLILSGVCYGAMMVFLPETYSHKLLMDKKRCMPGYSP  222
              + P +GG +     WR  F ++ ILS +   A+++ LP                    
Sbjct  134  AALGPLLGGLLASLFGWRAAFLILAILSLLA--AVLLLLPRP---------------PPE  176

Query  223  AKQPPVKEMLYTTLTRPWLMLFTEPILFLLSLYMALVYGILYLDFTAYPVVYRETRGWSA  282
            +K+P   E    +L   W  L  +P+L+L  L   L++G  +     Y  +Y+E  G SA
Sbjct  177  SKRPKPAEEARLSLIVAWKALLRDPVLWL--LLALLLFGFAFFGLLTYLPLYQEVLGLSA  234

Query  283  SIAGLSFLGICVGMAIATLISPYVNRIHGIYLVLV  317
             +AGL      +  AI  L+   ++   G    L+
Sbjct  235  LLAGLLLGLGGLLGAIGRLLLGRLSDRLGRRRRLL  269



Lambda      K        H        a         alpha
   0.327    0.142    0.473    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 437288440


Query= TCONS_00042938

Length=264


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 292109026


Query= TCONS_00037191

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            100     7e-24


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 100 bits (251),  Expect = 7e-24, Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 148/376 (39%), Gaps = 33/376 (9%)

Query  46   LVLMTATIAFCSSIYTAAIPS-ISHAYGCSSTVATLGITTFLLGFASGPLLFAPLSEVWG  104
            L L     A   S+   A+P  ++   G S T   L +T F LG+A    L   LS+ +G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  105  RNTIFRVVLGLFVLFQIGCALAPNVASMIVFRFFSGFFGSPTVTNSGGSITDIWPQDNRS  164
            R  +  + L LF L  +    A ++  ++V R   G         +   I D +P + R 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  165  VPLALFSAASFLGPVIAPTVGGFICQYTSWRWNFWVVLILSGVCYGAMMVFLPETYSHKL  224
              L L SA   LG  + P +GG +     WR  F ++ ILS +   A+++ LP       
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLA--AVLLLLPRP-----  173

Query  225  LMDKKRCMPGYSPAKQPPVKEMLYTTLTRPWLMLFTEPILFLLSLYMALVYGILYLDFTA  284
                         +K+P   E    +L   W  L  +P+L+L  L   L++G  +     
Sbjct  174  ----------PPESKRPKPAEEARLSLIVAWKALLRDPVLWL--LLALLLFGFAFFGLLT  221

Query  285  YPVVYRETRGWSASIAGLSFLGICVGMAIATLISPYVNRIHGIYVRRLGGPQPEARLPHL  344
            Y  +Y+E  G SA +AGL      +  AI  L+        G    RLG      RL   
Sbjct  222  YLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLL-------GRLSDRLG---RRRRLLLA  271

Query  345  IVISWLIPVSLFWFAWTASPPTHWISGIVAGVPFGFGLILLFLGITSYLTDCYGSFGASA  404
            +++  L  + L   + T S     ++ ++ G  FG     L   ++            +A
Sbjct  272  LLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPK---EERGTA  328

Query  405  LAANAVLRSLFGAVFP  420
                    SL GA+ P
Sbjct  329  SGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.327    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 590476040


Query= TCONS_00042939

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            88.2    7e-20


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 88.2 bits (219),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 90/364 (25%), Positives = 143/364 (39%), Gaps = 32/364 (9%)

Query  9    SSIYTAAIPSISHAYGCSSTVATLGITTFLLGFASGPLLFAPLSEVWGRNTIFRVVLGLF  68
            S +  A    ++   G S T   L +T F LG+A    L   LS+ +GR  +  + L LF
Sbjct  13   SLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLF  72

Query  69   VLFQIGCALAPNVASMIVFRFFSGFFGSPTVTNSGGSITDIWPQDNRSVPLALFSAASFL  128
             L  +    A ++  ++V R   G         +   I D +P + R   L L SA   L
Sbjct  73   ALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGL  132

Query  129  GPVIAPTVGGFICQYTSWRWNFWVVLILSGVCYGAMMVFLPETYSHKLLMDKKRCMPGYS  188
            G  + P +GG +     WR  F ++ ILS +   A+++ LP                   
Sbjct  133  GAALGPLLGGLLASLFGWRAAFLILAILSLLA--AVLLLLPRP---------------PP  175

Query  189  PAKQPPVKEMLYTTLTRPWLMLFTEPILFLLSLYMALVYGILYLDFTAYPVVYRETRGWS  248
             +K+P   E    +L   W  L  +P+L+L  L   L++G  +     Y  +Y+E  G S
Sbjct  176  ESKRPKPAEEARLSLIVAWKALLRDPVLWL--LLALLLFGFAFFGLLTYLPLYQEVLGLS  233

Query  249  ASIAGLSFLGICVGMAIATLISPYVNRIHGIYVRRLGGPQPEARLPHLIVISWLIPVSLF  308
            A +AGL      +  AI  L+        G    RLG      RL   +++  L  + L 
Sbjct  234  ALLAGLLLGLGGLLGAIGRLLL-------GRLSDRLG---RRRRLLLALLLLILAALGLL  283

Query  309  WFAWTASPPTHWISGIVAGVPFGFGLILLFLGITSYLTDCYGSFGASALAANAVLRSLFG  368
              + T S     ++ ++ G  FG     L   ++            +A        SL G
Sbjct  284  LLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPK---EERGTASGLYNTAGSLGG  340

Query  369  AVFP  372
            A+ P
Sbjct  341  ALGP  344



Lambda      K        H        a         alpha
   0.329    0.142    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 516858248


Query= TCONS_00042940

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            79.4    6e-17


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 79.4 bits (196),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 76/317 (24%), Positives = 122/317 (38%), Gaps = 32/317 (10%)

Query  36   GRNTIFRVVLGLFVLFQIGCALAPNVASMIVFRFFSGFFGSPTVTNSGGSITDIWPQDNR  95
            GR  +  + L LF L  +    A ++  ++V R   G         +   I D +P + R
Sbjct  60   GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEER  119

Query  96   SVPLALFSAASFLGPVIAPTVGGFICQYTSWRWNFWVVLILSGVCYGAMMVFLPETYSHK  155
               L L SA   LG  + P +GG +     WR  F ++ ILS +   A+++ LP      
Sbjct  120  GRALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILSLLA--AVLLLLPRP----  173

Query  156  LLMDKKRCMPGYSPAKQPPVKEMLYTTLTRPWLMLFTEPILFLLSLYMALVYGILYLDFT  215
                          +K+P   E    +L   W  L  +P+L+L  L   L++G  +    
Sbjct  174  -----------PPESKRPKPAEEARLSLIVAWKALLRDPVLWL--LLALLLFGFAFFGLL  220

Query  216  AYPVVYRETRGWSASIAGLSFLGICVGMAIATLISPYVNRIHGIYVRRLGGPQPEARLPH  275
             Y  +Y+E  G SA +AGL      +  AI  L+        G    RLG      RL  
Sbjct  221  TYLPLYQEVLGLSALLAGLLLGLGGLLGAIGRLLL-------GRLSDRLG---RRRRLLL  270

Query  276  LIVISWLIPVSLFWFAWTASPPTHWISGIVAGVPFGFGLILLFLGITSYLTDCYGSFGAS  335
             +++  L  + L   + T S     ++ ++ G  FG     L   ++            +
Sbjct  271  ALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPK---EERGT  327

Query  336  ALAANAVLRSLFGAVFP  352
            A        SL GA+ P
Sbjct  328  ASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.329    0.142    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 493962756


Query= TCONS_00037192

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            100     4e-24


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 100 bits (252),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 90/363 (25%), Positives = 143/363 (39%), Gaps = 32/363 (9%)

Query  43   LIYTAAIPSISHAYGCSSTVATLGITTFLLGFASGPLLFAPLSEVWGRNTIFRVVLGLFV  102
            L+  A    ++   G S T   L +T F LG+A    L   LS+ +GR  +  + L LF 
Sbjct  14   LLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFA  73

Query  103  LFQIGCALAPNVASMIVFRFFSGFFGSPTVTNSGGSITDIWPQDNRSVPLALFSAASFLG  162
            L  +    A ++  ++V R   G         +   I D +P + R   L L SA   LG
Sbjct  74   LGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLG  133

Query  163  PVIAPTVGGFICQYTSWRWNFWVVLILSGVCYGAMMVFLPETYSHKLLMDKKRCMPGYSP  222
              + P +GG +     WR  F ++ ILS +   A+++ LP                    
Sbjct  134  AALGPLLGGLLASLFGWRAAFLILAILSLLA--AVLLLLPRP---------------PPE  176

Query  223  AKQPPVKEMLYTTLTRPWLMLFTEPILFLLSLYMALVYGILYLDFTAYPVVYRETRGWSA  282
            +K+P   E    +L   W  L  +P+L+L  L   L++G  +     Y  +Y+E  G SA
Sbjct  177  SKRPKPAEEARLSLIVAWKALLRDPVLWL--LLALLLFGFAFFGLLTYLPLYQEVLGLSA  234

Query  283  SIAGLSFLGICVGMAIATLISPYVNRIHGIYVRRLGGPQPEARLPHLIVISWLIPVSLFW  342
             +AGL      +  AI  L+        G    RLG      RL   +++  L  + L  
Sbjct  235  LLAGLLLGLGGLLGAIGRLLL-------GRLSDRLG---RRRRLLLALLLLILAALGLLL  284

Query  343  FAWTASPPTHWISGIVAGVPFGFGLILLFLGITSYLTDCYGSFGASALAANAVLRSLFGA  402
             + T S     ++ ++ G  FG     L   ++            +A        SL GA
Sbjct  285  LSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPK---EERGTASGLYNTAGSLGGA  341

Query  403  VFP  405
            + P
Sbjct  342  LGP  344



Lambda      K        H        a         alpha
   0.327    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0843    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00037189

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            100     4e-24


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 100 bits (252),  Expect = 4e-24, Method: Composition-based stats.
 Identities = 90/363 (25%), Positives = 143/363 (39%), Gaps = 32/363 (9%)

Query  43   LIYTAAIPSISHAYGCSSTVATLGITTFLLGFASGPLLFAPLSEVWGRNTIFRVVLGLFV  102
            L+  A    ++   G S T   L +T F LG+A    L   LS+ +GR  +  + L LF 
Sbjct  14   LLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFA  73

Query  103  LFQIGCALAPNVASMIVFRFFSGFFGSPTVTNSGGSITDIWPQDNRSVPLALFSAASFLG  162
            L  +    A ++  ++V R   G         +   I D +P + R   L L SA   LG
Sbjct  74   LGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSAGFGLG  133

Query  163  PVIAPTVGGFICQYTSWRWNFWVVLILSGVCYGAMMVFLPETYSHKLLMDKKRCMPGYSP  222
              + P +GG +     WR  F ++ ILS +   A+++ LP                    
Sbjct  134  AALGPLLGGLLASLFGWRAAFLILAILSLLA--AVLLLLPRP---------------PPE  176

Query  223  AKQPPVKEMLYTTLTRPWLMLFTEPILFLLSLYMALVYGILYLDFTAYPVVYRETRGWSA  282
            +K+P   E    +L   W  L  +P+L+L  L   L++G  +     Y  +Y+E  G SA
Sbjct  177  SKRPKPAEEARLSLIVAWKALLRDPVLWL--LLALLLFGFAFFGLLTYLPLYQEVLGLSA  234

Query  283  SIAGLSFLGICVGMAIATLISPYVNRIHGIYVRRLGGPQPEARLPHLIVISWLIPVSLFW  342
             +AGL      +  AI  L+        G    RLG      RL   +++  L  + L  
Sbjct  235  LLAGLLLGLGGLLGAIGRLLL-------GRLSDRLG---RRRRLLLALLLLILAALGLLL  284

Query  343  FAWTASPPTHWISGIVAGVPFGFGLILLFLGITSYLTDCYGSFGASALAANAVLRSLFGA  402
             + T S     ++ ++ G  FG     L   ++            +A        SL GA
Sbjct  285  LSLTLSSLWLLLALLLLGFGFGLVFPALNALVSDLAPK---EERGTASGLYNTAGSLGGA  341

Query  403  VFP  405
            + P
Sbjct  342  LGP  344



Lambda      K        H        a         alpha
   0.327    0.141    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00037193

Length=125


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.140    0.468    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00037194

Length=76


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81070770


Query= TCONS_00037196

Length=130


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00042941

Length=194


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00042942

Length=188


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.135    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 179225648


Query= TCONS_00042943

Length=78


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82859768


Query= TCONS_00037197

Length=312


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00037198

Length=158


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 134946552


Query= TCONS_00037199

Length=312


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00042944

Length=104


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.136    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81771680


Query= TCONS_00037200

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00042945

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00037201

Length=161


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 140136804


Query= TCONS_00037202

Length=390


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 467555942


Query= TCONS_00042947

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461771 pfam05891, Methyltransf_PK, AdoMet dependent proline d...  248     6e-84


>CDD:461771 pfam05891, Methyltransf_PK, AdoMet dependent proline di-methyltransferase. 
 This protein is expressed in the tail neuron 
PVT and in uterine cells in C. elegans [worm-base]. In Saccharomyces 
cerevisiae this is AdoMet dependent proline di-methyltransferase. 
This enzyme catalyzes the di-methylation of ribosomal 
proteins Rpl12 and Rps25 at N-terminal proline residues. 
The methyltransferases described here specifically recognize 
the N-terminal X-Pro-Lys sequence motif, and they may 
account for nearly all previously described eukaryotic protein 
N-terminal methylation reactions. A number of other yeast 
and human proteins also share the recognition motif and may 
be similarly modified. As with other methyltransferases, this 
family carries the characteristic GxGxG motif.
Length=218

 Score = 248 bits (634),  Expect = 6e-84, Method: Composition-based stats.
 Identities = 99/228 (43%), Positives = 143/228 (63%), Gaps = 12/228 (5%)

Query  22   DSRIDHAASLKYWNDVPATSNGMLAMLGDYPWYSRIDLRGSRAFLAKV-RRLLPSCSTEG  80
            D  I +  ++ YW  V AT +GML   G Y   S ID+ GSR FL ++ R  LP    + 
Sbjct  1    DEEIFYEKAIDYWEGVSATVDGML---GGYGHVSDIDVNGSRNFLRRLLRERLPG---KN  54

Query  81   KLKLAVDCGAGVGRITEGFLSHVCEVVDVVEPVAKFTEVVRNSSLKKDGTVGDIYTVGLE  140
            +  +A+DCGAG+GR+T+  L  +   VD+VEPV  F E  +    +    VG+ + VGL+
Sbjct  55   RHLVALDCGAGIGRVTKNLLLPLFSKVDLVEPVEDFIEKAKEYLAEGKKKVGNFFCVGLQ  114

Query  141  NWYPEK-KYDLIWTQWCVGHLTDAQLLEYVKRCRAALTETGIMVVKENQSTDINGEDMFD  199
            ++ PE+ +YDLIW QWC+GHLTD  L+ ++KRC+  L   G +VVKEN +   NG D+FD
Sbjct  115  DFTPEEGRYDLIWIQWCIGHLTDEDLVAFLKRCKGGLKPNGFIVVKENVTQ--NGFDVFD  172

Query  200  EVDSSVTRTDEKFKKIFKEAGMTVFLSEIQTGFPKNFRLLPVRSYALR  247
            + DSSVTR++  F++IFK+AG+ +   E Q G P+   L PV+ YAL+
Sbjct  173  KEDSSVTRSEAYFRQIFKKAGLKLVAEERQKGLPQ--ELYPVKMYALK  218



Lambda      K        H        a         alpha
   0.317    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 269262510


Query= TCONS_00042946

Length=298


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00037207

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.141    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00042948

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00037203

Length=91


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82904864


Query= TCONS_00042949

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  98.3    2e-28


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 98.3 bits (246),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 44/59 (75%), Gaps = 0/59 (0%)

Query  1   MLKYDSTHGRFEHEISQDEGSLTIQGRKVKFYAEKDPARIPWHETGAEYIIESTGVFTT  59
           +LKYDS HGRF  E+  +E  L + G+K+K +AE+DPA +PW + G + +IESTGVFTT
Sbjct  42  LLKYDSVHGRFPGEVEAEEDGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTT  100



Lambda      K        H        a         alpha
   0.315    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00037205

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  98.3    2e-28


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 98.3 bits (246),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 44/59 (75%), Gaps = 0/59 (0%)

Query  1   MLKYDSTHGRFEHEISQDEGSLTIQGRKVKFYAEKDPARIPWHETGAEYIIESTGVFTT  59
           +LKYDS HGRF  E+  +E  L + G+K+K +AE+DPA +PW + G + +IESTGVFTT
Sbjct  42  LLKYDSVHGRFPGEVEAEEDGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTT  100



Lambda      K        H        a         alpha
   0.315    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00037204

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  98.3    2e-28


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 98.3 bits (246),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 44/59 (75%), Gaps = 0/59 (0%)

Query  1   MLKYDSTHGRFEHEISQDEGSLTIQGRKVKFYAEKDPARIPWHETGAEYIIESTGVFTT  59
           +LKYDS HGRF  E+  +E  L + G+K+K +AE+DPA +PW + G + +IESTGVFTT
Sbjct  42  LLKYDSVHGRFPGEVEAEEDGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTT  100



Lambda      K        H        a         alpha
   0.315    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00042950

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  98.3    2e-28


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 98.3 bits (246),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 44/59 (75%), Gaps = 0/59 (0%)

Query  1   MLKYDSTHGRFEHEISQDEGSLTIQGRKVKFYAEKDPARIPWHETGAEYIIESTGVFTT  59
           +LKYDS HGRF  E+  +E  L + G+K+K +AE+DPA +PW + G + +IESTGVFTT
Sbjct  42  LLKYDSVHGRFPGEVEAEEDGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTT  100



Lambda      K        H        a         alpha
   0.315    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00037206

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  98.3    2e-28


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 98.3 bits (246),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 44/59 (75%), Gaps = 0/59 (0%)

Query  1   MLKYDSTHGRFEHEISQDEGSLTIQGRKVKFYAEKDPARIPWHETGAEYIIESTGVFTT  59
           +LKYDS HGRF  E+  +E  L + G+K+K +AE+DPA +PW + G + +IESTGVFTT
Sbjct  42  LLKYDSVHGRFPGEVEAEEDGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTT  100



Lambda      K        H        a         alpha
   0.315    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00037208

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  98.3    2e-28


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 98.3 bits (246),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 44/59 (75%), Gaps = 0/59 (0%)

Query  1   MLKYDSTHGRFEHEISQDEGSLTIQGRKVKFYAEKDPARIPWHETGAEYIIESTGVFTT  59
           +LKYDS HGRF  E+  +E  L + G+K+K +AE+DPA +PW + G + +IESTGVFTT
Sbjct  42  LLKYDSVHGRFPGEVEAEEDGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTT  100



Lambda      K        H        a         alpha
   0.315    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00042951

Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  98.3    2e-28


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 98.3 bits (246),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 44/59 (75%), Gaps = 0/59 (0%)

Query  1   MLKYDSTHGRFEHEISQDEGSLTIQGRKVKFYAEKDPARIPWHETGAEYIIESTGVFTT  59
           +LKYDS HGRF  E+  +E  L + G+K+K +AE+DPA +PW + G + +IESTGVFTT
Sbjct  42  LLKYDSVHGRFPGEVEAEEDGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTT  100



Lambda      K        H        a         alpha
   0.315    0.131    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 100853520


Query= TCONS_00042952

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00037214

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00037212

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00037213

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00037209

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00037210

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00037211

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00042953

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00042954

Length=137


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00042955

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.137    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00042956

Length=117


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.137    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82172200


Query= TCONS_00037215

Length=129


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 93027896


Query= TCONS_00042957

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00037216

Length=174


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159071478


Query= TCONS_00037217

Length=362


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 430996520


Query= TCONS_00037218

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  271     4e-88


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 271 bits (695),  Expect = 4e-88, Method: Composition-based stats.
 Identities = 127/403 (32%), Positives = 186/403 (46%), Gaps = 41/403 (10%)

Query  17   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  76
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  77   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  136
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  137  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  196
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  197  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  256
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  257  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLARKLTTPSRGCVYLTEGVNTGGATPEDCV  316
              PYF    PK+TGRE F                         +L   +        D  
Sbjct  226  ADPYFALPAPKSTGRELF----------------------NLPWLETHLAKHPVAAADVQ  263

Query  317  ATITRITAQSLADAYERWGPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGI  376
            AT+  +TA ++ DA  +  P    + + + GGG+ NP ++  L   +P  ++      G+
Sbjct  264  ATLAELTAVTIVDALLQAQP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGL  321

Query  377  PIGAKEALGFALLTHECFVGRPMIVPKRTESDRPGVVGQIQPG  419
                 EA+ FA L      G P  +P  T + R   +G I P 
Sbjct  322  DPDYMEAMAFAWLAARTLNGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.319    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00037220

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  272     4e-89


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 272 bits (698),  Expect = 4e-89, Method: Composition-based stats.
 Identities = 128/385 (33%), Positives = 187/385 (49%), Gaps = 24/385 (6%)

Query  17   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  76
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  77   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  136
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  137  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  196
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  197  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  256
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  257  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLARG-ATPEDCVATITRITAQSLADAYERW  315
              PYF    PK+TGRE F         +  LA+      D  AT+  +TA ++ DA  + 
Sbjct  226  ADPYFALPAPKSTGRELF----NLPWLETHLAKHPVAAADVQATLAELTAVTIVDALLQA  281

Query  316  GPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGIPIGAKEALGFALLTHECF  375
             P    + + + GGG+ NP ++  L   +P  ++      G+     EA+ FA L     
Sbjct  282  QP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGLDPDYMEAMAFAWLAARTL  339

Query  376  VGRPMIVPKRTESDRPGVVGQIQPG  400
             G P  +P  T + R   +G I P 
Sbjct  340  NGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.319    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00037219

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  273     3e-89


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 273 bits (700),  Expect = 3e-89, Method: Composition-based stats.
 Identities = 128/385 (33%), Positives = 187/385 (49%), Gaps = 24/385 (6%)

Query  17   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  76
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  77   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  136
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  137  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  196
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  197  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  256
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  257  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLARG-ATPEDCVATITRITAQSLADAYERW  315
              PYF    PK+TGRE F         +  LA+      D  AT+  +TA ++ DA  + 
Sbjct  226  ADPYFALPAPKSTGRELF----NLPWLETHLAKHPVAAADVQATLAELTAVTIVDALLQA  281

Query  316  GPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGIPIGAKEALGFALLTHECF  375
             P    + + + GGG+ NP ++  L   +P  ++      G+     EA+ FA L     
Sbjct  282  QP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGLDPDYMEAMAFAWLAARTL  339

Query  376  VGRPMIVPKRTESDRPGVVGQIQPG  400
             G P  +P  T + R   +G I P 
Sbjct  340  NGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.319    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00042958

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  262     6e-85


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 262 bits (672),  Expect = 6e-85, Method: Composition-based stats.
 Identities = 122/394 (31%), Positives = 180/394 (46%), Gaps = 41/394 (10%)

Query  1    MDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTPEEMAIVNIQ  60
            +DGVD   V             +LL     PMP  L+ +++ L +   TT + +  ++ Q
Sbjct  12   LDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTLQRLGELDHQ  65

Query  61   LGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAHLDMGEIAII  120
            LG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      + +G+  +I
Sbjct  66   LGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFTMQLGDANLI  118

Query  121  AAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIANFSILPRGA  180
            A  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIAN S+LP GA
Sbjct  119  AERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIANVSVLPPGA  178

Query  181  VEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVLQGPYFVHDI  240
                  FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L  PYF    
Sbjct  179  --PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLLADPYFALPA  234

Query  241  PKTTGRETFGDRMAEDICDEMLARKLTTPSRGCVYLTEGVNTGGATPEDCVATITRITAQ  300
            PK+TGRE F                         +L   +        D  AT+  +TA 
Sbjct  235  PKSTGRELF----------------------NLPWLETHLAKHPVAAADVQATLAELTAV  272

Query  301  SLADAYERWGPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGIPIGAKEALG  360
            ++ DA  +  P    + + + GGG+ NP ++  L   +P  ++      G+     EA+ 
Sbjct  273  TIVDALLQAQP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGLDPDYMEAMA  330

Query  361  FALLTHECFVGRPMIVPKRTESDRPGVVGQIQPG  394
            FA L      G P  +P  T + R   +G I P 
Sbjct  331  FAWLAARTLNGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.319    0.138    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00037221

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  271     4e-88


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 271 bits (695),  Expect = 4e-88, Method: Composition-based stats.
 Identities = 127/403 (32%), Positives = 186/403 (46%), Gaps = 41/403 (10%)

Query  17   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  76
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  77   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  136
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  137  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  196
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  197  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  256
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  257  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLARKLTTPSRGCVYLTEGVNTGGATPEDCV  316
              PYF    PK+TGRE F                         +L   +        D  
Sbjct  226  ADPYFALPAPKSTGRELF----------------------NLPWLETHLAKHPVAAADVQ  263

Query  317  ATITRITAQSLADAYERWGPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGI  376
            AT+  +TA ++ DA  +  P    + + + GGG+ NP ++  L   +P  ++      G+
Sbjct  264  ATLAELTAVTIVDALLQAQP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGL  321

Query  377  PIGAKEALGFALLTHECFVGRPMIVPKRTESDRPGVVGQIQPG  419
                 EA+ FA L      G P  +P  T + R   +G I P 
Sbjct  322  DPDYMEAMAFAWLAARTLNGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.319    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00037222

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  273     3e-89


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 273 bits (700),  Expect = 3e-89, Method: Composition-based stats.
 Identities = 128/385 (33%), Positives = 187/385 (49%), Gaps = 24/385 (6%)

Query  17   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  76
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  77   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  136
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  137  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  196
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  197  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  256
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  257  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLARG-ATPEDCVATITRITAQSLADAYERW  315
              PYF    PK+TGRE F         +  LA+      D  AT+  +TA ++ DA  + 
Sbjct  226  ADPYFALPAPKSTGRELF----NLPWLETHLAKHPVAAADVQATLAELTAVTIVDALLQA  281

Query  316  GPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGIPIGAKEALGFALLTHECF  375
             P    + + + GGG+ NP ++  L   +P  ++      G+     EA+ FA L     
Sbjct  282  QP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGLDPDYMEAMAFAWLAARTL  339

Query  376  VGRPMIVPKRTESDRPGVVGQIQPG  400
             G P  +P  T + R   +G I P 
Sbjct  340  NGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.319    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 532195288


Query= TCONS_00042959

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  271     4e-88


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 271 bits (695),  Expect = 4e-88, Method: Composition-based stats.
 Identities = 127/403 (32%), Positives = 186/403 (46%), Gaps = 41/403 (10%)

Query  17   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  76
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  77   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  136
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  137  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  196
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  197  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  256
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  257  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLARKLTTPSRGCVYLTEGVNTGGATPEDCV  316
              PYF    PK+TGRE F                         +L   +        D  
Sbjct  226  ADPYFALPAPKSTGRELF----------------------NLPWLETHLAKHPVAAADVQ  263

Query  317  ATITRITAQSLADAYERWGPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGI  376
            AT+  +TA ++ DA  +  P    + + + GGG+ NP ++  L   +P  ++      G+
Sbjct  264  ATLAELTAVTIVDALLQAQP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGL  321

Query  377  PIGAKEALGFALLTHECFVGRPMIVPKRTESDRPGVVGQIQPG  419
                 EA+ FA L      G P  +P  T + R   +G I P 
Sbjct  322  DPDYMEAMAFAWLAARTLNGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.319    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00037225

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  270     5e-88


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 270 bits (693),  Expect = 5e-88, Method: Composition-based stats.
 Identities = 127/403 (32%), Positives = 186/403 (46%), Gaps = 41/403 (10%)

Query  17   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  76
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  77   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  136
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  137  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  196
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  197  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  256
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  257  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLARKLTTPSRGCVYLTEGVNTGGATPEDCV  316
              PYF    PK+TGRE F                         +L   +        D  
Sbjct  226  ADPYFALPAPKSTGRELF----------------------NLPWLETHLAKHPVAAADVQ  263

Query  317  ATITRITAQSLADAYERWGPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGI  376
            AT+  +TA ++ DA  +  P    + + + GGG+ NP ++  L   +P  ++      G+
Sbjct  264  ATLAELTAVTIVDALLQAQP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGL  321

Query  377  PIGAKEALGFALLTHECFVGRPMIVPKRTESDRPGVVGQIQPG  419
                 EA+ FA L      G P  +P  T + R   +G I P 
Sbjct  322  DPDYMEAMAFAWLAARTLNGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.318    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00037224

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  270     5e-88


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 270 bits (693),  Expect = 5e-88, Method: Composition-based stats.
 Identities = 127/403 (32%), Positives = 186/403 (46%), Gaps = 41/403 (10%)

Query  17   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  76
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  77   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  136
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  137  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  196
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  197  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  256
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  257  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLARKLTTPSRGCVYLTEGVNTGGATPEDCV  316
              PYF    PK+TGRE F                         +L   +        D  
Sbjct  226  ADPYFALPAPKSTGRELF----------------------NLPWLETHLAKHPVAAADVQ  263

Query  317  ATITRITAQSLADAYERWGPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGI  376
            AT+  +TA ++ DA  +  P    + + + GGG+ NP ++  L   +P  ++      G+
Sbjct  264  ATLAELTAVTIVDALLQAQP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGL  321

Query  377  PIGAKEALGFALLTHECFVGRPMIVPKRTESDRPGVVGQIQPG  419
                 EA+ FA L      G P  +P  T + R   +G I P 
Sbjct  322  DPDYMEAMAFAWLAARTLNGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.318    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00037223

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  270     5e-88


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 270 bits (693),  Expect = 5e-88, Method: Composition-based stats.
 Identities = 127/403 (32%), Positives = 186/403 (46%), Gaps = 41/403 (10%)

Query  17   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  76
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  77   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  136
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  137  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  196
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  197  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  256
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  257  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLARKLTTPSRGCVYLTEGVNTGGATPEDCV  316
              PYF    PK+TGRE F                         +L   +        D  
Sbjct  226  ADPYFALPAPKSTGRELF----------------------NLPWLETHLAKHPVAAADVQ  263

Query  317  ATITRITAQSLADAYERWGPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGI  376
            AT+  +TA ++ DA  +  P    + + + GGG+ NP ++  L   +P  ++      G+
Sbjct  264  ATLAELTAVTIVDALLQAQP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGL  321

Query  377  PIGAKEALGFALLTHECFVGRPMIVPKRTESDRPGVVGQIQPG  419
                 EA+ FA L      G P  +P  T + R   +G I P 
Sbjct  322  DPDYMEAMAFAWLAARTLNGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.318    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00037226

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  223     3e-71


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 223 bits (570),  Expect = 3e-71, Method: Composition-based stats.
 Identities = 107/302 (35%), Positives = 152/302 (50%), Gaps = 22/302 (7%)

Query  17   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  76
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  77   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  136
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  137  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  196
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  197  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  256
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  257  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLARG-ATPEDCVATITRITAQSLADAYERW  315
              PYF    PK+TGRE F         +  LA+      D  AT+  +TA ++ DA  + 
Sbjct  226  ADPYFALPAPKSTGRELF----NLPWLETHLAKHPVAAADVQATLAELTAVTIVDALLQA  281

Query  316  GP  317
             P
Sbjct  282  QP  283



Lambda      K        H        a         alpha
   0.318    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00042961

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  272     4e-89


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 272 bits (698),  Expect = 4e-89, Method: Composition-based stats.
 Identities = 128/385 (33%), Positives = 187/385 (49%), Gaps = 24/385 (6%)

Query  17   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  76
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  77   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  136
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  137  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  196
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  197  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  256
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  257  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLARG-ATPEDCVATITRITAQSLADAYERW  315
              PYF    PK+TGRE F         +  LA+      D  AT+  +TA ++ DA  + 
Sbjct  226  ADPYFALPAPKSTGRELF----NLPWLETHLAKHPVAAADVQATLAELTAVTIVDALLQA  281

Query  316  GPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGIPIGAKEALGFALLTHECF  375
             P    + + + GGG+ NP ++  L   +P  ++      G+     EA+ FA L     
Sbjct  282  QP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGLDPDYMEAMAFAWLAARTL  339

Query  376  VGRPMIVPKRTESDRPGVVGQIQPG  400
             G P  +P  T + R   +G I P 
Sbjct  340  NGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.319    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00042962

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  270     5e-88


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 270 bits (693),  Expect = 5e-88, Method: Composition-based stats.
 Identities = 127/403 (32%), Positives = 186/403 (46%), Gaps = 41/403 (10%)

Query  17   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  76
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  77   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  136
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  137  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  196
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  197  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  256
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  257  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLARKLTTPSRGCVYLTEGVNTGGATPEDCV  316
              PYF    PK+TGRE F                         +L   +        D  
Sbjct  226  ADPYFALPAPKSTGRELF----------------------NLPWLETHLAKHPVAAADVQ  263

Query  317  ATITRITAQSLADAYERWGPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGI  376
            AT+  +TA ++ DA  +  P    + + + GGG+ NP ++  L   +P  ++      G+
Sbjct  264  ATLAELTAVTIVDALLQAQP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGL  321

Query  377  PIGAKEALGFALLTHECFVGRPMIVPKRTESDRPGVVGQIQPG  419
                 EA+ FA L      G P  +P  T + R   +G I P 
Sbjct  322  DPDYMEAMAFAWLAARTLNGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.318    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00042960

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  272     4e-89


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 272 bits (698),  Expect = 4e-89, Method: Composition-based stats.
 Identities = 128/385 (33%), Positives = 187/385 (49%), Gaps = 24/385 (6%)

Query  17   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  76
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  77   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  136
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  137  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  196
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  197  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  256
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  257  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLARG-ATPEDCVATITRITAQSLADAYERW  315
              PYF    PK+TGRE F         +  LA+      D  AT+  +TA ++ DA  + 
Sbjct  226  ADPYFALPAPKSTGRELF----NLPWLETHLAKHPVAAADVQATLAELTAVTIVDALLQA  281

Query  316  GPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGIPIGAKEALGFALLTHECF  375
             P    + + + GGG+ NP ++  L   +P  ++      G+     EA+ FA L     
Sbjct  282  QP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGLDPDYMEAMAFAWLAARTL  339

Query  376  VGRPMIVPKRTESDRPGVVGQIQPG  400
             G P  +P  T + R   +G I P 
Sbjct  340  NGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.319    0.138    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00042963

Length=442
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  270     6e-88


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 270 bits (692),  Expect = 6e-88, Method: Composition-based stats.
 Identities = 128/389 (33%), Positives = 186/389 (48%), Gaps = 27/389 (7%)

Query  17   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  76
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  77   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  136
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  137  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  196
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  197  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  256
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  257  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLAQGVNTGGATPEDCVATITRITAQSLADA  316
              PYF    PK+TGRE F         +  LA           D  AT+  +TA ++ DA
Sbjct  226  ADPYFALPAPKSTGRELF----NLPWLETHLA----KHPVAAADVQATLAELTAVTIVDA  277

Query  317  YERWGPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGIPIGAKEALGFALLT  376
              +  P    + + + GGG+ NP ++  L   +P  ++      G+     EA+ FA L 
Sbjct  278  LLQAQP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGLDPDYMEAMAFAWLA  335

Query  377  HECFVGRPMIVPKRTESDRPGVVGQIQPG  405
                 G P  +P  T + R   +G I P 
Sbjct  336  ARTLNGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.318    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 539863808


Query= TCONS_00042964

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  271     4e-88


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 271 bits (695),  Expect = 4e-88, Method: Composition-based stats.
 Identities = 127/403 (32%), Positives = 186/403 (46%), Gaps = 41/403 (10%)

Query  17   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  76
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  77   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  136
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  137  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  196
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  197  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  256
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  257  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLARKLTTPSRGCVYLTEGVNTGGATPEDCV  316
              PYF    PK+TGRE F                         +L   +        D  
Sbjct  226  ADPYFALPAPKSTGRELF----------------------NLPWLETHLAKHPVAAADVQ  263

Query  317  ATITRITAQSLADAYERWGPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGI  376
            AT+  +TA ++ DA  +  P    + + + GGG+ NP ++  L   +P  ++      G+
Sbjct  264  ATLAELTAVTIVDALLQAQP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGL  321

Query  377  PIGAKEALGFALLTHECFVGRPMIVPKRTESDRPGVVGQIQPG  419
                 EA+ FA L      G P  +P  T + R   +G I P 
Sbjct  322  DPDYMEAMAFAWLAARTLNGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.319    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00037227

Length=442
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  270     6e-88


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 270 bits (692),  Expect = 6e-88, Method: Composition-based stats.
 Identities = 128/389 (33%), Positives = 186/389 (48%), Gaps = 27/389 (7%)

Query  17   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  76
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  77   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  136
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  137  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  196
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  197  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  256
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  257  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLAQGVNTGGATPEDCVATITRITAQSLADA  316
              PYF    PK+TGRE F         +  LA           D  AT+  +TA ++ DA
Sbjct  226  ADPYFALPAPKSTGRELF----NLPWLETHLA----KHPVAAADVQATLAELTAVTIVDA  277

Query  317  YERWGPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGIPIGAKEALGFALLT  376
              +  P    + + + GGG+ NP ++  L   +P  ++      G+     EA+ FA L 
Sbjct  278  LLQAQP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGLDPDYMEAMAFAWLA  335

Query  377  HECFVGRPMIVPKRTESDRPGVVGQIQPG  405
                 G P  +P  T + R   +G I P 
Sbjct  336  ARTLNGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.318    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 539863808


Query= TCONS_00037228

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  271     4e-88


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 271 bits (695),  Expect = 4e-88, Method: Composition-based stats.
 Identities = 127/403 (32%), Positives = 186/403 (46%), Gaps = 41/403 (10%)

Query  17   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  76
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  77   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  136
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  137  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  196
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  197  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  256
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  257  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLARKLTTPSRGCVYLTEGVNTGGATPEDCV  316
              PYF    PK+TGRE F                         +L   +        D  
Sbjct  226  ADPYFALPAPKSTGRELF----------------------NLPWLETHLAKHPVAAADVQ  263

Query  317  ATITRITAQSLADAYERWGPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGI  376
            AT+  +TA ++ DA  +  P    + + + GGG+ NP ++  L   +P  ++      G+
Sbjct  264  ATLAELTAVTIVDALLQAQP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGL  321

Query  377  PIGAKEALGFALLTHECFVGRPMIVPKRTESDRPGVVGQIQPG  419
                 EA+ FA L      G P  +P  T + R   +G I P 
Sbjct  322  DPDYMEAMAFAWLAARTLNGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.319    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00037229

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  271     2e-88


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 271 bits (694),  Expect = 2e-88, Method: Composition-based stats.
 Identities = 128/389 (33%), Positives = 186/389 (48%), Gaps = 27/389 (7%)

Query  11   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  70
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  71   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  130
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  131  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  190
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  191  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  250
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  251  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLAQGVNTGGATPEDCVATITRITAQSLADA  310
              PYF    PK+TGRE F         +  LA           D  AT+  +TA ++ DA
Sbjct  226  ADPYFALPAPKSTGRELF----NLPWLETHLA----KHPVAAADVQATLAELTAVTIVDA  277

Query  311  YERWGPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGIPIGAKEALGFALLT  370
              +  P    + + + GGG+ NP ++  L   +P  ++      G+     EA+ FA L 
Sbjct  278  LLQAQP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGLDPDYMEAMAFAWLA  335

Query  371  HECFVGRPMIVPKRTESDRPGVVGQIQPG  399
                 G P  +P  T + R   +G I P 
Sbjct  336  ARTLNGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.319    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 507942834


Query= TCONS_00042965

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  272     1e-88


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 272 bits (698),  Expect = 1e-88, Method: Composition-based stats.
 Identities = 127/403 (32%), Positives = 186/403 (46%), Gaps = 41/403 (10%)

Query  11   VIGHNAGTSMDGVDLVHVHFTQDSPKMPLKMQLLHYGEYPMPKKLKARVMKLIKENKTTP  70
             IG  +GTS+DGVD   V             +LL     PMP  L+ +++ L +   TT 
Sbjct  3    YIGLMSGTSLDGVDAALVDLDDARV------ELLASHFSPMPAGLRQQLLDLCQGGATTL  56

Query  71   EEMAIVNIQLGEVITDAVKWFAQENNFSLASDVDLIGGQGQTIWHLPLPELFEGNQSRAH  130
            + +  ++ QLG +  DAV    Q+ N S    +  IG  GQT+ H P     EG      
Sbjct  57   QRLGELDHQLGLLFADAVNALLQKQNLS-PEQIRAIGCHGQTVRHEP-----EG-AVPFT  109

Query  131  LDMGEIAIIAAGTGVTSLGNFRVSEMALGRQGCPLFAALDSLLLSHPTLNRAVQNIGGIA  190
            + +G+  +IA  TG+T + +FR  ++A G QG PL  A    L + P   RAV NIGGIA
Sbjct  110  MQLGDANLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAAPNETRAVLNIGGIA  169

Query  191  NFSILPRGAVEECYDFDTGPGNVFIDAAVRYFTNGEQEYDKDGAMGQKGKVDQSVVDRVL  250
            N S+LP GA      FDTGPGN+ +DA ++      + YDKDG     GKV+ +++  +L
Sbjct  170  NVSVLPPGA--PVLGFDTGPGNMLMDAWIQKHRG--EPYDKDGEWAASGKVNPALLAVLL  225

Query  251  QGPYFVHDIPKTTGRETFGDRMAEDICDEMLARKLTTPSRGCVYLTEGVNTGGATPEDCV  310
              PYF    PK+TGRE F                         +L   +        D  
Sbjct  226  ADPYFALPAPKSTGRELF----------------------NLPWLETHLAKHPVAAADVQ  263

Query  311  ATITRITAQSLADAYERWGPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGI  370
            AT+  +TA ++ DA  +  P    + + + GGG+ NP ++  L   +P  ++      G+
Sbjct  264  ATLAELTAVTIVDALLQAQP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGL  321

Query  371  PIGAKEALGFALLTHECFVGRPMIVPKRTESDRPGVVGQIQPG  413
                 EA+ FA L      G P  +P  T + R   +G I P 
Sbjct  322  DPDYMEAMAFAWLAARTLNGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.319    0.137    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 552133440


Query= TCONS_00037230

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase. ...  102     9e-27


>CDD:397660 pfam03702, AnmK, Anhydro-N-acetylmuramic acid kinase.  Anhydro-N-acetylmuramic 
acid kinase catalyzes the specific phosphorylation 
of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with 
the simultaneous cleavage of the 1,6-anhydro ring, generating 
MurNAc-6-P. It is also required for the utilization of anhMurNAc, 
either imported from the medium, or derived from its 
own cell wall murein, and in so doing plays a role in cell 
wall recycling.
Length=364

 Score = 102 bits (257),  Expect = 9e-27, Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 72/158 (46%), Gaps = 7/158 (4%)

Query  4    KGKVDQSVVDRVLQGPYFVHDIPKTTGRETFGDRMAEDICDEMLARG-ATPEDCVATITR  62
             GKV+ +++  +L  PYF    PK+TGRE F         +  LA+      D  AT+  
Sbjct  213  SGKVNPALLAVLLADPYFALPAPKSTGRELF----NLPWLETHLAKHPVAAADVQATLAE  268

Query  63   ITAQSLADAYERWGPPGGVDEIYMGGGGSYNPNIINYLKERMPNTRIVPISEIGIPIGAK  122
            +TA ++ DA  +  P    + + + GGG+ NP ++  L   +P  ++      G+     
Sbjct  269  LTAVTIVDALLQAQP--DCERLLVCGGGARNPLLMARLAALLPGVQVASTDAYGLDPDYM  326

Query  123  EALGFALLTHECFVGRPMIVPKRTESDRPGVVGQIQPG  160
            EA+ FA L      G P  +P  T + R   +G I P 
Sbjct  327  EAMAFAWLAARTLNGLPGNLPSVTGASRARSLGAIYPA  364



Lambda      K        H        a         alpha
   0.320    0.139    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 194442920


Query= TCONS_00037231

Length=126
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  60.9    2e-12


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 60.9 bits (148),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 6/113 (5%)

Query  2    FDDAPRYFSTVVPQLALKDPLVLLACVAVAAR------QYSLVNDQQQHSHEQALTYYNA  55
            F ++   F  V+  LAL +P +L A +A++A          L   + Q     AL     
Sbjct  17   FPESSNPFRKVLLPLALSNPALLHALLALSAFHLQSSGPPDLWEREAQRYKSLALRLLQR  76

Query  56   AIHLLSKRLHDSGPDPAVFASCLLIAHCEMVESKASAWDLHLKGTGDLLKMYG  108
            A+  LS RL  +     V A+ LL+   E+     S W +HL+G  DL+++ G
Sbjct  77   ALAELSSRLSSNSKYDDVLAAILLLCSFEISSGDVSDWRVHLEGAKDLIRLRG  129



Lambda      K        H        a         alpha
   0.323    0.134    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 87660902


Query= TCONS_00037232

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  67.1    8e-13


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 67.1 bits (164),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 134/366 (37%), Gaps = 40/366 (11%)

Query  2    FDDAPRYFSTVVPQLALKDPLVLLACVAVAAR------QYSLVNDQQQHSHEQALTYYNA  55
            F ++   F  V+  LAL +P +L A +A++A          L   + Q     AL     
Sbjct  17   FPESSNPFRKVLLPLALSNPALLHALLALSAFHLQSSGPPDLWEREAQRYKSLALRLLQR  76

Query  56   AIHLLSKRLHDSGPDPAVFASCLLIAHCEMVESKASAWDLHLKGTGDLLKMYG--WHGMS  113
            A+  LS RL  +     V A+ LL+   E+     S W +HL+G  DL+++ G      S
Sbjct  77   ALAELSSRLSSNSKYDDVLAAILLLCSFEISSGDVSDWRVHLEGAKDLIRLRGGPSKTSS  136

Query  114  GGLAQASFWI--YCRMIILASLCAGKPAALEPREWLPGGVFCDPPT-WTLKSWQ---KKV  167
            G  +   F +  +    IL+S   G+  +    E+L             L         +
Sbjct  137  GLSSLLRFLLRNFAYHDILSSTTTGRGPSFPSEEYLDLFGDELELGSSGLDPLMGCSNSL  196

Query  168  VFLLG--MVHDFWSRTPPDDMDRPTKQRHDAQWKELEAELVSLQTQAPAVCSPISILPPN  225
              L+          R+   D +    +    + +ELE  L S +       S    +P +
Sbjct  197  FLLISEISDLAREKRSLRSDNELLPLEFLS-RAQELEQRLSSWE-----PRSDDLEIPLD  250

Query  226  GEDTPFQSVRYLNGPVSAAWQMLHTAFL-IHTICTPCSPASSRLSVLSRPDVTGRAQMYA  284
            GED   + +  L       ++    A + ++       P+S  +  L       +     
Sbjct  251  GEDPLSELLLTLT----ELYR--LAALIYLYRRILGLPPSSPEVQEL-----VSKLLELL  299

Query  285  RQIVANSLANRCTIAWANAVQLLTLAGQCLVVEAERNACVRVLQEIQQQTGWNTRASIDR  344
              +  + LA    + W      L +AG   V + +R+  +  L  +++    N R + + 
Sbjct  300  DLLPDSPLAISS-LLWP-----LFIAGCEAVDDDDRDFVLDRLDSLEKSRLGNVRRAREI  353

Query  345  LGAAWE  350
            L   W+
Sbjct  354  LEEVWK  359



Lambda      K        H        a         alpha
   0.321    0.133    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 459789232


Query= TCONS_00037233

Length=479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  73.6    1e-14


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 73.6 bits (181),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 140/382 (37%), Gaps = 40/382 (10%)

Query  80   FFLWRYIDFIGPRFDMFDDAPRYFSTVVPQLALKDPLVLLACVAVAAR------QYSLVN  133
              L  Y+D + P    F ++   F  V+  LAL +P +L A +A++A          L  
Sbjct  1    ELLDYYLDNVSPLLSPFPESSNPFRKVLLPLALSNPALLHALLALSAFHLQSSGPPDLWE  60

Query  134  DQQQHSHEQALTYYNAAIHLLSKRLHDSGPDPAVFASCLLIAHCEMVESKASAWDLHLKG  193
             + Q     AL     A+  LS RL  +     V A+ LL+   E+     S W +HL+G
Sbjct  61   REAQRYKSLALRLLQRALAELSSRLSSNSKYDDVLAAILLLCSFEISSGDVSDWRVHLEG  120

Query  194  TGDLLKMYG--WHGMSGGLAQASFWI--YCRMIILASLCAGKPAALEPREWLPGGVFCDP  249
              DL+++ G      SG  +   F +  +    IL+S   G+  +    E+L        
Sbjct  121  AKDLIRLRGGPSKTSSGLSSLLRFLLRNFAYHDILSSTTTGRGPSFPSEEYLDLFGDELE  180

Query  250  PT-WTLKSWQ---KKVVFLLG--MVHDFWSRTPPDDMDRPTKQRHDAQWKELEAELVSLQ  303
                 L         +  L+          R+   D +    +    + +ELE  L S +
Sbjct  181  LGSSGLDPLMGCSNSLFLLISEISDLAREKRSLRSDNELLPLEFLS-RAQELEQRLSSWE  239

Query  304  TQAPAVCSPISILPPNGEDTPFQSVRYLNGPVSAAWQMLHTAFL-IHTICTPCSPASSRL  362
                   S    +P +GED   + +  L       ++    A + ++       P+S  +
Sbjct  240  -----PRSDDLEIPLDGEDPLSELLLTLT----ELYR--LAALIYLYRRILGLPPSSPEV  288

Query  363  SVLSRPDVTGRAQMYARQIVANSLANRCTIAWANAVQLLTLAGQCLVVEAERNACVRVLQ  422
              L       +       +  + LA    + W      L +AG   V + +R+  +  L 
Sbjct  289  QEL-----VSKLLELLDLLPDSPLAISS-LLWP-----LFIAGCEAVDDDDRDFVLDRLD  337

Query  423  EIQQQTGWNTRASIDRLGAAWE  444
             +++    N R + + L   W+
Sbjct  338  SLEKSRLGNVRRAREILEEVWK  359



Lambda      K        H        a         alpha
   0.320    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 596610856


Query= TCONS_00037234

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  67.1    8e-13


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 67.1 bits (164),  Expect = 8e-13, Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 134/366 (37%), Gaps = 40/366 (11%)

Query  2    FDDAPRYFSTVVPQLALKDPLVLLACVAVAAR------QYSLVNDQQQHSHEQALTYYNA  55
            F ++   F  V+  LAL +P +L A +A++A          L   + Q     AL     
Sbjct  17   FPESSNPFRKVLLPLALSNPALLHALLALSAFHLQSSGPPDLWEREAQRYKSLALRLLQR  76

Query  56   AIHLLSKRLHDSGPDPAVFASCLLIAHCEMVESKASAWDLHLKGTGDLLKMYG--WHGMS  113
            A+  LS RL  +     V A+ LL+   E+     S W +HL+G  DL+++ G      S
Sbjct  77   ALAELSSRLSSNSKYDDVLAAILLLCSFEISSGDVSDWRVHLEGAKDLIRLRGGPSKTSS  136

Query  114  GGLAQASFWI--YCRMIILASLCAGKPAALEPREWLPGGVFCDPPT-WTLKSWQ---KKV  167
            G  +   F +  +    IL+S   G+  +    E+L             L         +
Sbjct  137  GLSSLLRFLLRNFAYHDILSSTTTGRGPSFPSEEYLDLFGDELELGSSGLDPLMGCSNSL  196

Query  168  VFLLG--MVHDFWSRTPPDDMDRPTKQRHDAQWKELEAELVSLQTQAPAVCSPISILPPN  225
              L+          R+   D +    +    + +ELE  L S +       S    +P +
Sbjct  197  FLLISEISDLAREKRSLRSDNELLPLEFLS-RAQELEQRLSSWE-----PRSDDLEIPLD  250

Query  226  GEDTPFQSVRYLNGPVSAAWQMLHTAFL-IHTICTPCSPASSRLSVLSRPDVTGRAQMYA  284
            GED   + +  L       ++    A + ++       P+S  +  L       +     
Sbjct  251  GEDPLSELLLTLT----ELYR--LAALIYLYRRILGLPPSSPEVQEL-----VSKLLELL  299

Query  285  RQIVANSLANRCTIAWANAVQLLTLAGQCLVVEAERNACVRVLQEIQQQTGWNTRASIDR  344
              +  + LA    + W      L +AG   V + +R+  +  L  +++    N R + + 
Sbjct  300  DLLPDSPLAISS-LLWP-----LFIAGCEAVDDDDRDFVLDRLDSLEKSRLGNVRRAREI  353

Query  345  LGAAWE  350
            L   W+
Sbjct  354  LEEVWK  359



Lambda      K        H        a         alpha
   0.321    0.133    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 459789232


Query= TCONS_00037235

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcripti...  66.3    2e-12


>CDD:403235 pfam11951, Fungal_trans_2, Fungal specific transcription factor 
domain.  This family of are likely to be transcription factors. 
This protein is found in fungi. Proteins in this family 
are typically between 454 to 826 amino acids in length. This 
protein is found associated with pfam00172.
Length=384

 Score = 66.3 bits (162),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 133/382 (35%), Gaps = 60/382 (16%)

Query  80   FFLWRYIDFIGPRFDMFDDAPRYFSTVVPQLALKDPLVLLACVAVAAR------QYSLVN  133
              L  Y+D + P    F ++   F  V+  LAL +P +L A +A++A          L  
Sbjct  1    ELLDYYLDNVSPLLSPFPESSNPFRKVLLPLALSNPALLHALLALSAFHLQSSGPPDLWE  60

Query  134  DQQQHSHEQALTYYNAAIHLLSKRLHDSGPDPAVFASCLLIAHCEMVESKASAWDLHLKG  193
             + Q     AL     A+  LS RL  +     V A+ LL+   E+     S W +HL+G
Sbjct  61   REAQRYKSLALRLLQRALAELSSRLSSNSKYDDVLAAILLLCSFEISSGDVSDWRVHLEG  120

Query  194  TGDLLKM------------------------MIILASLCAGKPAALEPREWLPGGVFCDP  229
              DL+++                          IL+S   G+  +    E+L        
Sbjct  121  AKDLIRLRGGPSKTSSGLSSLLRFLLRNFAYHDILSSTTTGRGPSFPSEEYLDLFGDELE  180

Query  230  PT-WTLKSWQ---KKVVFLLG--MVHDFWSRTPPDDMDRPTKQRHDAQWKELEAELVSLQ  283
                 L         +  L+          R+   D +    +    + +ELE  L S +
Sbjct  181  LGSSGLDPLMGCSNSLFLLISEISDLAREKRSLRSDNELLPLEFLS-RAQELEQRLSSWE  239

Query  284  TQAPAVCSPISILPPNGEDTPFQSVRYLNGPVSAAWQMLHTAFL-IHTICTPCSPASSRL  342
                   S    +P +GED   + +  L       ++    A + ++       P+S  +
Sbjct  240  -----PRSDDLEIPLDGEDPLSELLLTLT----ELYR--LAALIYLYRRILGLPPSSPEV  288

Query  343  SVLSRPDVTGRAQMYARQIVANSLANRCTIAWANAVQLLTLAGQCLVVEAERNACVRVLQ  402
              L       +       +  + LA    + W      L +AG   V + +R+  +  L 
Sbjct  289  QEL-----VSKLLELLDLLPDSPLAISS-LLWP-----LFIAGCEAVDDDDRDFVLDRLD  337

Query  403  EIQQQTGWNTRASIDRLGAAWE  424
             +++    N R + + L   W+
Sbjct  338  SLEKSRLGNVRRAREILEEVWK  359



Lambda      K        H        a         alpha
   0.320    0.132    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00042966

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00042967

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00042968

Length=259


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00037236

Length=354


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00037237

Length=354


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.133    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 418412680


Query= TCONS_00037238

Length=138


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 106161600


Query= TCONS_00037239

Length=381


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00037240

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  271     3e-92


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 271 bits (696),  Expect = 3e-92, Method: Composition-based stats.
 Identities = 109/238 (46%), Positives = 144/238 (61%), Gaps = 29/238 (12%)

Query  63   MIGGLALEVIGYVGRIQLHYNPFPFSPFLQYLICLTLGPAFLSAAIYICLGHIVVVYGEG  122
             I G  LEVIGY+GRI  H NP+   PF+  ++ L L PAF++AAIY+ LG I+   GE 
Sbjct  1    FILGCILEVIGYIGRILSHNNPWSLGPFILQIVLLLLAPAFIAAAIYMTLGRIIRALGES  60

Query  123  ISRLKPRTYTIIFVLCDFLSLVLQAAGGAITSIADNDQQDLRQTGINIMIAGLASQVASL  182
            +SRL+PR YT IFV  D LSLVLQAAGG + + AD+  +   +TG NIMIAGLA QVA L
Sbjct  61   LSRLRPRWYTWIFVTGDVLSLVLQAAGGGLAASADSSSE--AKTGENIMIAGLAFQVAFL  118

Query  183  AVFLFLCADFAWRVYKNPNKLNESMDHVRKTLKWKAFLIGRFLFPGISPRYIYLTAKGLT  242
             +F+ L ADF  RV ++          +R + +WK FL+                   L 
Sbjct  119  GIFIILAADFHRRVRRS---------TLRLSRRWKLFLL------------------ALY  151

Query  243  VATLAIFVRSVFRVAELQEGFDGPLANDEVTFMILEGAMMAMATLCLTVLHPGYCFGG  300
             A+L I +RS++RVAEL +G+DG L   EV F +L+G MM +A + L V HPG+ F G
Sbjct  152  AASLLILIRSIYRVAELAQGWDGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPG  209



Lambda      K        H        a         alpha
   0.327    0.142    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0736    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00037241

Length=140
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461325 pfam04479, RTA1, RTA1 like protein. This family is com...  141     4e-44


>CDD:461325 pfam04479, RTA1, RTA1 like protein.  This family is comprised 
of fungal proteins with multiple transmembrane regions. RTA1 
is involved in resistance to 7-aminocholesterol, while RTM1 
confers resistance to an an unknown toxic chemical in molasses. 
These proteins may bind to the toxic substance, and thus 
prevent toxicity. They are not thought to be involved in 
the efflux of xenobiotics.
Length=210

 Score = 141 bits (359),  Expect = 4e-44, Method: Composition-based stats.
 Identities = 52/112 (46%), Positives = 71/112 (63%), Gaps = 9/112 (8%)

Query  1    MIAGLASQVASLAVFLFLCADFAWRVYKNPNKLNESMDHVRKTLKWKAFLIGLTVATLAI  60
            MIAGLA QVA L +F+ L ADF  RV ++          +R + +WK FL+ L  A+L I
Sbjct  107  MIAGLAFQVAFLGIFIILAADFHRRVRRS---------TLRLSRRWKLFLLALYAASLLI  157

Query  61   FVRSVFRVAELQEGFDGPLANDEVTFMILEGAMMAMATLCLTVLHPGYCFGG  112
             +RS++RVAEL +G+DG L   EV F +L+G MM +A + L V HPG+ F G
Sbjct  158  LIRSIYRVAELAQGWDGYLMTHEVYFYVLDGLMMLLAVVLLNVFHPGFLFPG  209



Lambda      K        H        a         alpha
   0.326    0.134    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 109700320


Query= TCONS_00037242

Length=107


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.127    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00037243

Length=539
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                260     6e-82


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 260 bits (667),  Expect = 6e-82, Method: Composition-based stats.
 Identities = 120/462 (26%), Positives = 190/462 (41%), Gaps = 47/462 (10%)

Query  91   EVTLAFSKRAAVAQQLVNCLTETMFPEAQERAKYLDELKVQGKSAGPLHGLPISIKDLFH  150
            E+  AF  R   A   +N      F EA  +A   D+ +  G   GPLHG+PI++KD   
Sbjct  1    ELVEAFLDRIEAANPKLNAFVTVFFDEALAQAAAADKQRAAGDPKGPLHGVPIAVKDNID  60

Query  151  VKGTHASIGMISFLDEKSTDNSPLIDILLSLGAVIYVKTNIPQTMMTADSHNNVFGRTLN  210
            VKG   + G  +  +  +  ++ +++ L   GAVI  KTN+ +  M + + N+VFG T N
Sbjct  61   VKGVPTTAGSKALENYPAPYDATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTRN  120

Query  211  PHNTILGPGGSSGGEGALIAMRGSPLGVGTDIAGSIRIPALCCGTYGFRPSASRIPNGGG  270
            P +    PGGSSGG  A +A    PL +GTD  GSIRIPA  CG  G +P+  R+   G 
Sbjct  121  PWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPASFCGLVGLKPTYGRVSRYGV  180

Query  271  RSCSTPGMKFILSCAGPLALDMDAVEVFLKTVIDARPGLYDSSVIDVPWRQATVKH---P  327
               ++      L   GPLA  ++   + L+ +    P    S    VP     VK     
Sbjct  181  VGYAS-----SLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPPVPDYAEPVKKSLKG  235

Query  328  LRIGVVPPDSSFPLHPPVKRTLAKAVKLLKAQGHHIIELSAEECKVMEINEVAWNIFTLD  387
            LRIGV   D  F L P V+R + +A+  L+A GH ++E+      +     + + I   +
Sbjct  236  LRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVVEVDPP--SLDYALPLYYLIAPAE  293

Query  388  SGA--MEHLQATGEPPVPALIN-----------VQRQVEILRQAGKTYLPDFSHLDRLGR  434
            + +    +      P   + +            V+R+  I+          +       +
Sbjct  294  ASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRR--IILGNYALSAGYYDKYYLKAQ  351

Query  435  LAALNTKRADLRETWRKMWISHDLDICLAPSAQNTAVPHDMFGLAPYTTFLNCLDRPIPL  494
                   R  +R  +  ++   +LD+ L+P+A   A               N  D    +
Sbjct  352  KV-----RRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEPDD-SPLVMYNLDDFTAGV  403

Query  495  TNSHLDNFAQL-----------EGAPCSIQVFTTTMRDEECL  525
                  N A L           +G P  +Q+      +E  L
Sbjct  404  VPV---NLAGLPAISLPAGFTADGLPVGVQIIGKPGDEETLL  442



Lambda      K        H        a         alpha
   0.319    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 678301568


Query= TCONS_00037245

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                251     4e-78


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 251 bits (643),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 120/476 (25%), Positives = 190/476 (40%), Gaps = 61/476 (13%)

Query  91   EVTLAFSKRAAVAQQLVNCLTETMFPEAQERAKYLDELKVQGKSAGPLHGLPISIKDLFH  150
            E+  AF  R   A   +N      F EA  +A   D+ +  G   GPLHG+PI++KD   
Sbjct  1    ELVEAFLDRIEAANPKLNAFVTVFFDEALAQAAAADKQRAAGDPKGPLHGVPIAVKDNID  60

Query  151  VKGTHASIGMISFLDEKSTDNSPLIDILLSLGAVIYVKTNIPQTMMTADSHNNVFGRTLN  210
            VKG   + G  +  +  +  ++ +++ L   GAVI  KTN+ +  M + + N+VFG T N
Sbjct  61   VKGVPTTAGSKALENYPAPYDATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTRN  120

Query  211  PHNTILGPGGSSGGEGALIAMRGSPLGVGTDIAGKKAPGRQEVANKPGSIRIPALCCGTY  270
            P +    PGGSSGG  A +A    PL +GTD                GSIRIPA  CG  
Sbjct  121  PWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTG--------------GSIRIPASFCGLV  166

Query  271  GFRPSASRIPNGGGRSCSTPGMKFILSCAGPLALDMDAVEVFLKTVIDARPGLYDSSVID  330
            G +P+  R+   G    ++      L   GPLA  ++   + L+ +    P    S    
Sbjct  167  GLKPTYGRVSRYGVVGYAS-----SLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPP  221

Query  331  VPWRQATVKH---PLRIGVVPPDSSFPLHPPVKRTLAKAVKLLKAQGHHIIELSAEECKV  387
            VP     VK     LRIGV   D  F L P V+R + +A+  L+A GH ++E+      +
Sbjct  222  VPDYAEPVKKSLKGLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVVEVDPP--SL  279

Query  388  MEINEVAWNIFTLDSGA--MEHLQATGEPPVPALIN-----------VQRQVEILRQAGK  434
                 + + I   ++ +    +      P   + +            V+R+  I+     
Sbjct  280  DYALPLYYLIAPAEASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRR--IILGNYA  337

Query  435  TYLPDFSHLDRLGRLAALNTKRADLRETWRKMWISHDLDICLAPSAQNTAVPHDMFGLAP  494
                 +       +       R  +R  +  ++   +LD+ L+P+A   A          
Sbjct  338  LSAGYYDKYYLKAQKV-----RRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEPDD-S  389

Query  495  YTTFLNCLDRPIPLTNSHLDNFAQL-----------EGAPCSIQVFTTTMRDEECL  539
                 N  D    +      N A L           +G P  +Q+      +E  L
Sbjct  390  PLVMYNLDDFTAGVVPV---NLAGLPAISLPAGFTADGLPVGVQIIGKPGDEETLL  442



Lambda      K        H        a         alpha
   0.318    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00037244

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                255     1e-79


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 255 bits (654),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 121/485 (25%), Positives = 196/485 (40%), Gaps = 59/485 (12%)

Query  91   EVTLAFSKRAAVAQQLVNCLTETMFPEAQERAKYLDELKVQGKSAGPLHGLPISIKDLFH  150
            E+  AF  R   A   +N      F EA  +A   D+ +  G   GPLHG+PI++KD   
Sbjct  1    ELVEAFLDRIEAANPKLNAFVTVFFDEALAQAAAADKQRAAGDPKGPLHGVPIAVKDNID  60

Query  151  VKGTHASIGMISFLDEKSTDNSPLIDILLSLGAVIYVKTNIPQTMMTADSHNNVFGRTLN  210
            VKG   + G  +  +  +  ++ +++ L   GAVI  KTN+ +  M + + N+VFG T N
Sbjct  61   VKGVPTTAGSKALENYPAPYDATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTRN  120

Query  211  PHNTILGPGGSSGGEGALIAMRGSPLGVGTDIAGKKAPGRQEVANKPGSIRIPALCCGTY  270
            P +    PGGSSGG  A +A    PL +GTD                GSIRIPA  CG  
Sbjct  121  PWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTG--------------GSIRIPASFCGLV  166

Query  271  GFRPSASRIPNGGGRSCSTPGMKFILSCAGPLALDMDAVEVFLKTVIDARPGLYDSSVID  330
            G +P+  R+   G    ++      L   GPLA  ++   + L+ +    P    S    
Sbjct  167  GLKPTYGRVSRYGVVGYAS-----SLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPP  221

Query  331  VPWRQATVKH---PLRIGVVPPDSSFPLHPPVKRTLAKAVKLLKAQGHHIIELSAEECKV  387
            VP     VK     LRIGV   D  F L P V+R + +A+  L+A GH ++E+      +
Sbjct  222  VPDYAEPVKKSLKGLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVVEVDPP--SL  279

Query  388  MEINEVAWNIFTLDSGA--MEHLQATGEPPVPALIN-----------VQRQVEILRQAGK  434
                 + + I   ++ +    +      P   + +            V+R+  I+     
Sbjct  280  DYALPLYYLIAPAEASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRR--IILGNYA  337

Query  435  TYLPDFSHLDRLGRLAALNTKRADLRETWRKMWISHDLDICLAPSAQNTAVPHDMFGLAP  494
                 +       +       R  +R  +  ++   +LD+ L+P+A   A          
Sbjct  338  LSAGYYDKYYLKAQKV-----RRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEPDD-S  389

Query  495  YTTFLNCLDYPSCIIPFGRVNEMDARETFELAPGQAGPSYNFAQLEGAPCSIQVFTTTMR  554
                 N  D+ + ++P                P  + P+   A  +G P  +Q+      
Sbjct  390  PLVMYNLDDFTAGVVPV----------NLAGLPAISLPAGFTA--DGLPVGVQIIGKPGD  437

Query  555  DEECL  559
            +E  L
Sbjct  438  EETLL  442



Lambda      K        H        a         alpha
   0.318    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 718819868


Query= TCONS_00037247

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                265     2e-83


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 265 bits (679),  Expect = 2e-83, Method: Composition-based stats.
 Identities = 121/471 (26%), Positives = 196/471 (42%), Gaps = 45/471 (10%)

Query  91   EVTLAFSKRAAVAQQLVNCLTETMFPEAQERAKYLDELKVQGKSAGPLHGLPISIKDLFH  150
            E+  AF  R   A   +N      F EA  +A   D+ +  G   GPLHG+PI++KD   
Sbjct  1    ELVEAFLDRIEAANPKLNAFVTVFFDEALAQAAAADKQRAAGDPKGPLHGVPIAVKDNID  60

Query  151  VKGTHASIGMISFLDEKSTDNSPLIDILLSLGAVIYVKTNIPQTMMTADSHNNVFGRTLN  210
            VKG   + G  +  +  +  ++ +++ L   GAVI  KTN+ +  M + + N+VFG T N
Sbjct  61   VKGVPTTAGSKALENYPAPYDATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTRN  120

Query  211  PHNTILGPGGSSGGEGALIAMRGSPLGVGTDIAGSIRIPALCCGTYGFRPSASRIPNGGG  270
            P +    PGGSSGG  A +A    PL +GTD  GSIRIPA  CG  G +P+  R+   G 
Sbjct  121  PWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPASFCGLVGLKPTYGRVSRYGV  180

Query  271  RSCSTPGMKFILSCAGPLALDMDAVEVFLKTVIDARPGLYDSSVIDVPWRQATVKH---P  327
               ++      L   GPLA  ++   + L+ +    P    S    VP     VK     
Sbjct  181  VGYAS-----SLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPPVPDYAEPVKKSLKG  235

Query  328  LRIGVVPPDSSFPLHPPVKRTLAKAVKLLKAQGHHIIELSAEECKVMEINEVAWNIFTLD  387
            LRIGV   D  F L P V+R + +A+  L+A GH ++E+      +     + + I   +
Sbjct  236  LRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVVEVDPP--SLDYALPLYYLIAPAE  293

Query  388  SGA--MEHLQATGEPPVPALIN-----------VQRQVEILRQAGKTYLPDFSHLDRLGR  434
            + +    +      P   + +            V+R+  I+          +       +
Sbjct  294  ASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRR--IILGNYALSAGYYDKYYLKAQ  351

Query  435  LAALNTKRADLRETWRKMWISHDLDICLAPSAQNTAVPHDMFGLAPYTTFLNCLDYPSCI  494
                   R  +R  +  ++   +LD+ L+P+A   A               N  D+ + +
Sbjct  352  KV-----RRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEPDD-SPLVMYNLDDFTAGV  403

Query  495  IPFGRVNEMDARETFELAPGQAGPSYNFAQLEGAPCSIQVFTTTMRDEECL  545
            +P                P  + P+   A  +G P  +Q+      +E  L
Sbjct  404  VPV----------NLAGLPAISLPAGFTA--DGLPVGVQIIGKPGDEETLL  442



Lambda      K        H        a         alpha
   0.319    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 697897876


Query= TCONS_00037246

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                255     1e-79


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 255 bits (654),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 121/485 (25%), Positives = 196/485 (40%), Gaps = 59/485 (12%)

Query  91   EVTLAFSKRAAVAQQLVNCLTETMFPEAQERAKYLDELKVQGKSAGPLHGLPISIKDLFH  150
            E+  AF  R   A   +N      F EA  +A   D+ +  G   GPLHG+PI++KD   
Sbjct  1    ELVEAFLDRIEAANPKLNAFVTVFFDEALAQAAAADKQRAAGDPKGPLHGVPIAVKDNID  60

Query  151  VKGTHASIGMISFLDEKSTDNSPLIDILLSLGAVIYVKTNIPQTMMTADSHNNVFGRTLN  210
            VKG   + G  +  +  +  ++ +++ L   GAVI  KTN+ +  M + + N+VFG T N
Sbjct  61   VKGVPTTAGSKALENYPAPYDATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTRN  120

Query  211  PHNTILGPGGSSGGEGALIAMRGSPLGVGTDIAGKKAPGRQEVANKPGSIRIPALCCGTY  270
            P +    PGGSSGG  A +A    PL +GTD                GSIRIPA  CG  
Sbjct  121  PWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTG--------------GSIRIPASFCGLV  166

Query  271  GFRPSASRIPNGGGRSCSTPGMKFILSCAGPLALDMDAVEVFLKTVIDARPGLYDSSVID  330
            G +P+  R+   G    ++      L   GPLA  ++   + L+ +    P    S    
Sbjct  167  GLKPTYGRVSRYGVVGYAS-----SLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPP  221

Query  331  VPWRQATVKH---PLRIGVVPPDSSFPLHPPVKRTLAKAVKLLKAQGHHIIELSAEECKV  387
            VP     VK     LRIGV   D  F L P V+R + +A+  L+A GH ++E+      +
Sbjct  222  VPDYAEPVKKSLKGLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVVEVDPP--SL  279

Query  388  MEINEVAWNIFTLDSGA--MEHLQATGEPPVPALIN-----------VQRQVEILRQAGK  434
                 + + I   ++ +    +      P   + +            V+R+  I+     
Sbjct  280  DYALPLYYLIAPAEASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRR--IILGNYA  337

Query  435  TYLPDFSHLDRLGRLAALNTKRADLRETWRKMWISHDLDICLAPSAQNTAVPHDMFGLAP  494
                 +       +       R  +R  +  ++   +LD+ L+P+A   A          
Sbjct  338  LSAGYYDKYYLKAQKV-----RRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEPDD-S  389

Query  495  YTTFLNCLDYPSCIIPFGRVNEMDARETFELAPGQAGPSYNFAQLEGAPCSIQVFTTTMR  554
                 N  D+ + ++P                P  + P+   A  +G P  +Q+      
Sbjct  390  PLVMYNLDDFTAGVVPV----------NLAGLPAISLPAGFTA--DGLPVGVQIIGKPGD  437

Query  555  DEECL  559
            +E  L
Sbjct  438  EETLL  442



Lambda      K        H        a         alpha
   0.318    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 718819868


Query= TCONS_00037248

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                132     1e-35


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 132 bits (334),  Expect = 1e-35, Method: Composition-based stats.
 Identities = 71/345 (21%), Positives = 122/345 (35%), Gaps = 59/345 (17%)

Query  1    MRGSPLGVGTDIAGKKAPGRQEVANKPGSIRIPALCCGTYGFRPSASRIPNGGGRSCSTP  60
                PL +GTD  G              SIRIPA  CG  G +P+  R+   G    ++ 
Sbjct  141  AGLVPLAIGTDTGG--------------SIRIPASFCGLVGLKPTYGRVSRYGVVGYAS-  185

Query  61   GMKFILSCAGPLALDMDAVEVFLKTVIDARPGLYDSSVIDVPWRQATVKH---PLRIGVV  117
                 L   GPLA  ++   + L+ +    P    S    VP     VK     LRIGV 
Sbjct  186  ----SLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPPVPDYAEPVKKSLKGLRIGVY  241

Query  118  PPDSSFPLHPPVKRTLAKAVKLLKAQGHHIIELSAEECKVMEINEVAWNIFTLDSGA--M  175
              D  F L P V+R + +A+  L+A GH ++E+      +     + + I   ++ +   
Sbjct  242  REDGYFDLDPEVRRAVEEALAQLEALGHEVVEVDPP--SLDYALPLYYLIAPAEASSNLA  299

Query  176  EHLQATGEPPVPALIN-----------VQRQVEILRQAGKTYLPDFSHLDRLGRLAALNT  224
             +      P   + +            V+R+  I+          +       +      
Sbjct  300  RYDGVPSGPDDLSELYPRTRAEGLGDEVKRR--IILGNYALSAGYYDKYYLKAQKV----  353

Query  225  KRADLRETWRKMWISHDLDICLAPSAQNTAVPHDMFGLAPYTTFLNCLDYPSCIIPFGRV  284
             R  +R  +  ++   +LD+ L+P+A   A               N  D+ + ++P    
Sbjct  354  -RRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEPDD-SPLVMYNLDDFTAGVVPV---  406

Query  285  NEMDARETFELAPGQAGPSYNFAQLEGAPCSIQVFTTTMRDEECL  329
                        P  + P+   A  +G P  +Q+      +E  L
Sbjct  407  -------NLAGLPAISLPAGFTA--DGLPVGVQIIGKPGDEETLL  442



Lambda      K        H        a         alpha
   0.321    0.137    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00042969

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                224     2e-69


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 224 bits (574),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 114/453 (25%), Positives = 182/453 (40%), Gaps = 61/453 (13%)

Query  1    MFPEAQERAKYLDELKVQGKSAGPLHGLPISIKDLFHVKGTHASIGMISFLDEKSTDNSP  60
             F EA  +A   D+ +  G   GPLHG+PI++KD   VKG   + G  +  +  +  ++ 
Sbjct  24   FFDEALAQAAAADKQRAAGDPKGPLHGVPIAVKDNIDVKGVPTTAGSKALENYPAPYDAT  83

Query  61   LIDILLSLGAVIYVKTNIPQTMMTADSHNNVFGRTLNPHNTILGPGGSSGGEGALIAMRG  120
            +++ L   GAVI  KTN+ +  M + + N+VFG T NP +    PGGSSGG  A +A   
Sbjct  84   VVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTRNPWDLSRTPGGSSGGSAAAVAAGL  143

Query  121  SPLGVGTDIAGKKAPGRQEVANKPGSIRIPALCCGTYGFRPSASRIPNGGGRSCSTPGMK  180
             PL +GTD                GSIRIPA  CG  G +P+  R+   G    ++    
Sbjct  144  VPLAIGTDTG--------------GSIRIPASFCGLVGLKPTYGRVSRYGVVGYAS----  185

Query  181  FILSCAGPLALDMDAVEVFLKTVIDARPGLYDSSVIDVPWRQATVKH---PLRIGVVPPD  237
              L   GPLA  ++   + L+ +    P    S    VP     VK     LRIGV   D
Sbjct  186  -SLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPPVPDYAEPVKKSLKGLRIGVYRED  244

Query  238  SSFPLHPPVKRTLAKAVKLLKAQGHHIIELSAEECKVMEINEVAWNIFTLDSGA--MEHL  295
              F L P V+R + +A+  L+A GH ++E+      +     + + I   ++ +    + 
Sbjct  245  GYFDLDPEVRRAVEEALAQLEALGHEVVEVDPP--SLDYALPLYYLIAPAEASSNLARYD  302

Query  296  QATGEPPVPALIN-----------VQRQVEILRQAGKTYLPDFSHLDRLGRLAALNTKRA  344
                 P   + +            V+R+  I+          +       +       R 
Sbjct  303  GVPSGPDDLSELYPRTRAEGLGDEVKRR--IILGNYALSAGYYDKYYLKAQKV-----RR  355

Query  345  DLRETWRKMWISHDLDICLAPSAQNTAVPHDMFGLAPYTTFLNCLDRPIPLTNSHLDNFA  404
             +R  +  ++   +LD+ L+P+A   A               N  D    +      N A
Sbjct  356  LIRREFAGLF--EELDVLLSPTAPTPAPRLGEPDD-SPLVMYNLDDFTAGVVPV---NLA  409

Query  405  QL-----------EGAPCSIQVFTTTMRDEECL  426
             L           +G P  +Q+      +E  L
Sbjct  410  GLPAISLPAGFTADGLPVGVQIIGKPGDEETLL  442



Lambda      K        H        a         alpha
   0.319    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00037249

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                229     9e-71


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 229 bits (585),  Expect = 9e-71, Method: Composition-based stats.
 Identities = 115/462 (25%), Positives = 188/462 (41%), Gaps = 59/462 (13%)

Query  1    MFPEAQERAKYLDELKVQGKSAGPLHGLPISIKDLFHVKGTHASIGMISFLDEKSTDNSP  60
             F EA  +A   D+ +  G   GPLHG+PI++KD   VKG   + G  +  +  +  ++ 
Sbjct  24   FFDEALAQAAAADKQRAAGDPKGPLHGVPIAVKDNIDVKGVPTTAGSKALENYPAPYDAT  83

Query  61   LIDILLSLGAVIYVKTNIPQTMMTADSHNNVFGRTLNPHNTILGPGGSSGGEGALIAMRG  120
            +++ L   GAVI  KTN+ +  M + + N+VFG T NP +    PGGSSGG  A +A   
Sbjct  84   VVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTRNPWDLSRTPGGSSGGSAAAVAAGL  143

Query  121  SPLGVGTDIAGKKAPGRQEVANKPGSIRIPALCCGTYGFRPSASRIPNGGGRSCSTPGMK  180
             PL +GTD                GSIRIPA  CG  G +P+  R+   G    ++    
Sbjct  144  VPLAIGTDTG--------------GSIRIPASFCGLVGLKPTYGRVSRYGVVGYAS----  185

Query  181  FILSCAGPLALDMDAVEVFLKTVIDARPGLYDSSVIDVPWRQATVKH---PLRIGVVPPD  237
              L   GPLA  ++   + L+ +    P    S    VP     VK     LRIGV   D
Sbjct  186  -SLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPPVPDYAEPVKKSLKGLRIGVYRED  244

Query  238  SSFPLHPPVKRTLAKAVKLLKAQGHHIIELSAEECKVMEINEVAWNIFTLDSGA--MEHL  295
              F L P V+R + +A+  L+A GH ++E+      +     + + I   ++ +    + 
Sbjct  245  GYFDLDPEVRRAVEEALAQLEALGHEVVEVDPP--SLDYALPLYYLIAPAEASSNLARYD  302

Query  296  QATGEPPVPALIN-----------VQRQVEILRQAGKTYLPDFSHLDRLGRLAALNTKRA  344
                 P   + +            V+R+  I+          +       +       R 
Sbjct  303  GVPSGPDDLSELYPRTRAEGLGDEVKRR--IILGNYALSAGYYDKYYLKAQKV-----RR  355

Query  345  DLRETWRKMWISHDLDICLAPSAQNTAVPHDMFGLAPYTTFLNCLDYPSCIIPFGRVNEM  404
             +R  +  ++   +LD+ L+P+A   A               N  D+ + ++P       
Sbjct  356  LIRREFAGLF--EELDVLLSPTAPTPAPRLGEPDD-SPLVMYNLDDFTAGVVPV------  406

Query  405  DARETFELAPGQAGPSYNFAQLEGAPCSIQVFTTTMRDEECL  446
                     P  + P+   A  +G P  +Q+      +E  L
Sbjct  407  ----NLAGLPAISLPAGFTA--DGLPVGVQIIGKPGDEETLL  442



Lambda      K        H        a         alpha
   0.319    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567470480


Query= TCONS_00037250

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                258     8e-81


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 258 bits (662),  Expect = 8e-81, Method: Composition-based stats.
 Identities = 121/485 (25%), Positives = 196/485 (40%), Gaps = 59/485 (12%)

Query  91   EVTLAFSKRAAVAQQLVNCLTETMFPEAQERAKYLDELKVQGKSAGPLHGLPISIKDLFH  150
            E+  AF  R   A   +N      F EA  +A   D+ +  G   GPLHG+PI++KD   
Sbjct  1    ELVEAFLDRIEAANPKLNAFVTVFFDEALAQAAAADKQRAAGDPKGPLHGVPIAVKDNID  60

Query  151  VKGTHASIGMISFLDEKSTDNSPLIDILLSLGAVIYVKTNIPQTMMTADSHNNVFGRTLN  210
            VKG   + G  +  +  +  ++ +++ L   GAVI  KTN+ +  M + + N+VFG T N
Sbjct  61   VKGVPTTAGSKALENYPAPYDATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTRN  120

Query  211  PHNTILGPGGSSGGEGALIAMRGSPLGVGTDIAGKKAPGRQEVANKPGSIRIPALCCGTY  270
            P +    PGGSSGG  A +A    PL +GTD                GSIRIPA  CG  
Sbjct  121  PWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTG--------------GSIRIPASFCGLV  166

Query  271  GFRPSASRIPNGGGRSCSTPGMKFILSCAGPLALDMDAVEVFLKTVIDARPGLYDSSVID  330
            G +P+  R+   G    ++      L   GPLA  ++   + L+ +    P    S    
Sbjct  167  GLKPTYGRVSRYGVVGYAS-----SLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPP  221

Query  331  VPWRQATVKH---PLRIGVVPPDSSFPLHPPVKRTLAKAVKLLKAQGHHIIELSAEECKV  387
            VP     VK     LRIGV   D  F L P V+R + +A+  L+A GH ++E+      +
Sbjct  222  VPDYAEPVKKSLKGLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVVEVDPP--SL  279

Query  388  MEINEVAWNIFTLDSGA--MEHLQATGEPPVPALIN-----------VQRQVEILRQAGK  434
                 + + I   ++ +    +      P   + +            V+R+  I+     
Sbjct  280  DYALPLYYLIAPAEASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRR--IILGNYA  337

Query  435  TYLPDFSHLDRLGRLAALNTKRADLRETWRKMWISHDLDICLAPSAQNTAVPHDMFGLAP  494
                 +       +       R  +R  +  ++   +LD+ L+P+A   A          
Sbjct  338  LSAGYYDKYYLKAQKV-----RRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEPDD-S  389

Query  495  YTTFLNCLDYPSCIIPFGRVNEMDARETFELAPGQAGPSCNFAQLEGAPCSIQVFTTTMR  554
                 N  D+ + ++P                P  + P+   A  +G P  +Q+      
Sbjct  390  PLVMYNLDDFTAGVVPV----------NLAGLPAISLPAGFTA--DGLPVGVQIIGKPGD  437

Query  555  DEECL  559
            +E  L
Sbjct  438  EETLL  442



Lambda      K        H        a         alpha
   0.318    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 718819868


Query= TCONS_00042971

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                245     3e-76


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 245 bits (627),  Expect = 3e-76, Method: Composition-based stats.
 Identities = 112/429 (26%), Positives = 177/429 (41%), Gaps = 47/429 (11%)

Query  91   EVTLAFSKRAAVAQQLVNCLTETMFPEAQERAKYLDELKVQGKSAGPLHGLPISIKDLFH  150
            E+  AF  R   A   +N      F EA  +A   D+ +  G   GPLHG+PI++KD   
Sbjct  1    ELVEAFLDRIEAANPKLNAFVTVFFDEALAQAAAADKQRAAGDPKGPLHGVPIAVKDNID  60

Query  151  VKGTHASIGMISFLDEKSTDNSPLIDILLSLGAVIYVKTNIPQTMMTADSHNNVFGRTLN  210
            VKG   + G  +  +  +  ++ +++ L   GAVI  KTN+ +  M + + N+VFG T N
Sbjct  61   VKGVPTTAGSKALENYPAPYDATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTRN  120

Query  211  PHNTILGPGGSSGGEGALIAMRGSPLGVGTDIAGKKAPGRQEVANKPGSIRIPALCCGTY  270
            P +    PGGSSGG  A +A    PL +GTD                GSIRIPA  CG  
Sbjct  121  PWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTG--------------GSIRIPASFCGLV  166

Query  271  GFRPSASRIPNGGGRSCSTPGMKFILSCAGPLALDMDAVEVFLKTVIDARPGLYDSSVID  330
            G +P+  R+   G    ++      L   GPLA  ++   + L+ +    P    S    
Sbjct  167  GLKPTYGRVSRYGVVGYAS-----SLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPP  221

Query  331  VPWRQATVKH---PLRIGVVPPDSSFPLHPPVKRTLAKAVKLLKAQGHHIIELSAEECKV  387
            VP     VK     LRIGV   D  F L P V+R + +A+  L+A GH ++E+      +
Sbjct  222  VPDYAEPVKKSLKGLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVVEVDPP--SL  279

Query  388  MEINEVAWNIFTLDSGA--MEHLQATGEPPVPALIN-----------VQRQVEILRQAGK  434
                 + + I   ++ +    +      P   + +            V+R+  I+     
Sbjct  280  DYALPLYYLIAPAEASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRR--IILGNYA  337

Query  435  TYLPDFSHLDRLGRLAALNTKRADLRETWRKMWISHDLDICLAPSAQNTAVPHDMFGLAP  494
                 +       +       R  +R  +  ++   +LD+ L+P+A   A          
Sbjct  338  LSAGYYDKYYLKAQKV-----RRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEPDD-S  389

Query  495  YTTFLNCLD  503
                 N  D
Sbjct  390  PLVMYNLDD  398



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641963984


Query= TCONS_00037251

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                128     1e-34


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 128 bits (324),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 108/297 (36%), Gaps = 47/297 (16%)

Query  1    MRGSPLGVGTDIAGKKAPGRQEVANKPGSIRIPALCCGTYGFRPSASRIPNGGGRSCSTP  60
                PL +GTD  G              SIRIPA  CG  G +P+  R+   G    ++ 
Sbjct  141  AGLVPLAIGTDTGG--------------SIRIPASFCGLVGLKPTYGRVSRYGVVGYAS-  185

Query  61   GMKFILSCAGPLALDMDAVEVFLKTVIDARPGLYDSSVIDVPWRQATVKH---PLRIGVV  117
                 L   GPLA  ++   + L+ +    P    S    VP     VK     LRIGV 
Sbjct  186  ----SLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPPVPDYAEPVKKSLKGLRIGVY  241

Query  118  PPDSSFPLHPPVKRTLAKAVKLLKAQGHHIIELSAEECKVMEINEVAWNIFTLDSGA--M  175
              D  F L P V+R + +A+  L+A GH ++E+      +     + + I   ++ +   
Sbjct  242  REDGYFDLDPEVRRAVEEALAQLEALGHEVVEVDPP--SLDYALPLYYLIAPAEASSNLA  299

Query  176  EHLQATGEPPVPALIN-----------VQRQVEILRQAGKTYLPDFSHLDRLGRLAALNT  224
             +      P   + +            V+R+  I+          +       +      
Sbjct  300  RYDGVPSGPDDLSELYPRTRAEGLGDEVKRR--IILGNYALSAGYYDKYYLKAQKV----  353

Query  225  KRADLRETWRKMWISHDLDICLAPSAQNTAVPHDMFGLAPYTTFLNCLDYPSCIIPF  281
             R  +R  +  ++   +LD+ L+P+A   A               N  D+ + ++P 
Sbjct  354  -RRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEPDD-SPLVMYNLDDFTAGVVPV  406



Lambda      K        H        a         alpha
   0.321    0.138    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00042972

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                224     2e-69


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 224 bits (574),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 114/453 (25%), Positives = 182/453 (40%), Gaps = 61/453 (13%)

Query  1    MFPEAQERAKYLDELKVQGKSAGPLHGLPISIKDLFHVKGTHASIGMISFLDEKSTDNSP  60
             F EA  +A   D+ +  G   GPLHG+PI++KD   VKG   + G  +  +  +  ++ 
Sbjct  24   FFDEALAQAAAADKQRAAGDPKGPLHGVPIAVKDNIDVKGVPTTAGSKALENYPAPYDAT  83

Query  61   LIDILLSLGAVIYVKTNIPQTMMTADSHNNVFGRTLNPHNTILGPGGSSGGEGALIAMRG  120
            +++ L   GAVI  KTN+ +  M + + N+VFG T NP +    PGGSSGG  A +A   
Sbjct  84   VVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTRNPWDLSRTPGGSSGGSAAAVAAGL  143

Query  121  SPLGVGTDIAGKKAPGRQEVANKPGSIRIPALCCGTYGFRPSASRIPNGGGRSCSTPGMK  180
             PL +GTD                GSIRIPA  CG  G +P+  R+   G    ++    
Sbjct  144  VPLAIGTDTG--------------GSIRIPASFCGLVGLKPTYGRVSRYGVVGYAS----  185

Query  181  FILSCAGPLALDMDAVEVFLKTVIDARPGLYDSSVIDVPWRQATVKH---PLRIGVVPPD  237
              L   GPLA  ++   + L+ +    P    S    VP     VK     LRIGV   D
Sbjct  186  -SLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPPVPDYAEPVKKSLKGLRIGVYRED  244

Query  238  SSFPLHPPVKRTLAKAVKLLKAQGHHIIELSAEECKVMEINEVAWNIFTLDSGA--MEHL  295
              F L P V+R + +A+  L+A GH ++E+      +     + + I   ++ +    + 
Sbjct  245  GYFDLDPEVRRAVEEALAQLEALGHEVVEVDPP--SLDYALPLYYLIAPAEASSNLARYD  302

Query  296  QATGEPPVPALIN-----------VQRQVEILRQAGKTYLPDFSHLDRLGRLAALNTKRA  344
                 P   + +            V+R+  I+          +       +       R 
Sbjct  303  GVPSGPDDLSELYPRTRAEGLGDEVKRR--IILGNYALSAGYYDKYYLKAQKV-----RR  355

Query  345  DLRETWRKMWISHDLDICLAPSAQNTAVPHDMFGLAPYTTFLNCLDRPIPLTNSHLDNFA  404
             +R  +  ++   +LD+ L+P+A   A               N  D    +      N A
Sbjct  356  LIRREFAGLF--EELDVLLSPTAPTPAPRLGEPDD-SPLVMYNLDDFTAGVVPV---NLA  409

Query  405  QL-----------EGAPCSIQVFTTTMRDEECL  426
             L           +G P  +Q+      +E  L
Sbjct  410  GLPAISLPAGFTADGLPVGVQIIGKPGDEETLL  442



Lambda      K        H        a         alpha
   0.319    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 536796400


Query= TCONS_00042973

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396144 pfam01425, Amidase, Amidase                                251     4e-78


>CDD:396144 pfam01425, Amidase, Amidase.  
Length=442

 Score = 251 bits (643),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 120/476 (25%), Positives = 190/476 (40%), Gaps = 61/476 (13%)

Query  91   EVTLAFSKRAAVAQQLVNCLTETMFPEAQERAKYLDELKVQGKSAGPLHGLPISIKDLFH  150
            E+  AF  R   A   +N      F EA  +A   D+ +  G   GPLHG+PI++KD   
Sbjct  1    ELVEAFLDRIEAANPKLNAFVTVFFDEALAQAAAADKQRAAGDPKGPLHGVPIAVKDNID  60

Query  151  VKGTHASIGMISFLDEKSTDNSPLIDILLSLGAVIYVKTNIPQTMMTADSHNNVFGRTLN  210
            VKG   + G  +  +  +  ++ +++ L   GAVI  KTN+ +  M + + N+VFG T N
Sbjct  61   VKGVPTTAGSKALENYPAPYDATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTRN  120

Query  211  PHNTILGPGGSSGGEGALIAMRGSPLGVGTDIAGKKAPGRQEVANKPGSIRIPALCCGTY  270
            P +    PGGSSGG  A +A    PL +GTD                GSIRIPA  CG  
Sbjct  121  PWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTG--------------GSIRIPASFCGLV  166

Query  271  GFRPSASRIPNGGGRSCSTPGMKFILSCAGPLALDMDAVEVFLKTVIDARPGLYDSSVID  330
            G +P+  R+   G    ++      L   GPLA  ++   + L+ +    P    S    
Sbjct  167  GLKPTYGRVSRYGVVGYAS-----SLDQVGPLARSVEDAALLLRVISGYDPKDSTSLPPP  221

Query  331  VPWRQATVKH---PLRIGVVPPDSSFPLHPPVKRTLAKAVKLLKAQGHHIIELSAEECKV  387
            VP     VK     LRIGV   D  F L P V+R + +A+  L+A GH ++E+      +
Sbjct  222  VPDYAEPVKKSLKGLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVVEVDPP--SL  279

Query  388  MEINEVAWNIFTLDSGA--MEHLQATGEPPVPALIN-----------VQRQVEILRQAGK  434
                 + + I   ++ +    +      P   + +            V+R+  I+     
Sbjct  280  DYALPLYYLIAPAEASSNLARYDGVPSGPDDLSELYPRTRAEGLGDEVKRR--IILGNYA  337

Query  435  TYLPDFSHLDRLGRLAALNTKRADLRETWRKMWISHDLDICLAPSAQNTAVPHDMFGLAP  494
                 +       +       R  +R  +  ++   +LD+ L+P+A   A          
Sbjct  338  LSAGYYDKYYLKAQKV-----RRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEPDD-S  389

Query  495  YTTFLNCLDRPIPLTNSHLDNFAQL-----------EGAPCSIQVFTTTMRDEECL  539
                 N  D    +      N A L           +G P  +Q+      +E  L
Sbjct  390  PLVMYNLDDFTAGVVPV---NLAGLPAISLPAGFTADGLPVGVQIIGKPGDEETLL  442



Lambda      K        H        a         alpha
   0.318    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688931308


Query= TCONS_00037252

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.126    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00042975

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00037253

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00037254

Length=189


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.132    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00037255

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00037256

Length=86


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00042977

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00042976

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00042978

Length=94


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.133    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80725046


Query= TCONS_00037258

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00037257

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.127    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00037259

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00037260

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00037261

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00037262

Length=63


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.128    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82853948


Query= TCONS_00037263

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462949 pfam10042, DUF2278, Uncharacterized conserved protein ...  181     6e-59


>CDD:462949 pfam10042, DUF2278, Uncharacterized conserved protein (DUF2278). 
 Members of this family of hypothetical bacterial proteins 
have no known function.
Length=205

 Score = 181 bits (461),  Expect = 6e-59, Method: Composition-based stats.
 Identities = 65/131 (50%), Positives = 88/131 (67%), Gaps = 6/131 (5%)

Query  6    LFRAAINIKSGDTNDSRLVYWIDRDFSQHSIIDRLSVLKPGFHLLEDTKSSPDGPRVGFI  65
             +RAAIN+KS D  DSRL+YW+  +F+ H I  +L+ L  GFH L    S+P G  + +I
Sbjct  41   DYRAAINVKSTDV-DSRLLYWVVENFT-HPITAKLAALPDGFHPLP---STPGGLALDYI  95

Query  66   RSNLFNVNSGRVLPQNIEGPDNNIIDLLEPEVRQAIERQAEVYVFGARFDT-KDGIHDVH  124
            R NLF+    R LP +I GPDN+I D+LEP +++AI  +A VY FG RF   ++GIHD+H
Sbjct  96   RGNLFDPTQMRPLPHDIPGPDNDINDVLEPYLQRAIAEKATVYAFGERFGPEQNGIHDIH  155

Query  125  MNQGNKGRWKG  135
            MNQGN GR+  
Sbjct  156  MNQGNSGRFAK  166



Lambda      K        H        a         alpha
   0.321    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00037265

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462949 pfam10042, DUF2278, Uncharacterized conserved protein ...  181     6e-59


>CDD:462949 pfam10042, DUF2278, Uncharacterized conserved protein (DUF2278). 
 Members of this family of hypothetical bacterial proteins 
have no known function.
Length=205

 Score = 181 bits (461),  Expect = 6e-59, Method: Composition-based stats.
 Identities = 65/131 (50%), Positives = 88/131 (67%), Gaps = 6/131 (5%)

Query  6    LFRAAINIKSGDTNDSRLVYWIDRDFSQHSIIDRLSVLKPGFHLLEDTKSSPDGPRVGFI  65
             +RAAIN+KS D  DSRL+YW+  +F+ H I  +L+ L  GFH L    S+P G  + +I
Sbjct  41   DYRAAINVKSTDV-DSRLLYWVVENFT-HPITAKLAALPDGFHPLP---STPGGLALDYI  95

Query  66   RSNLFNVNSGRVLPQNIEGPDNNIIDLLEPEVRQAIERQAEVYVFGARFDT-KDGIHDVH  124
            R NLF+    R LP +I GPDN+I D+LEP +++AI  +A VY FG RF   ++GIHD+H
Sbjct  96   RGNLFDPTQMRPLPHDIPGPDNDINDVLEPYLQRAIAEKATVYAFGERFGPEQNGIHDIH  155

Query  125  MNQGNKGRWKG  135
            MNQGN GR+  
Sbjct  156  MNQGNSGRFAK  166



Lambda      K        H        a         alpha
   0.321    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00037264

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462949 pfam10042, DUF2278, Uncharacterized conserved protein ...  181     6e-59


>CDD:462949 pfam10042, DUF2278, Uncharacterized conserved protein (DUF2278). 
 Members of this family of hypothetical bacterial proteins 
have no known function.
Length=205

 Score = 181 bits (461),  Expect = 6e-59, Method: Composition-based stats.
 Identities = 65/131 (50%), Positives = 88/131 (67%), Gaps = 6/131 (5%)

Query  6    LFRAAINIKSGDTNDSRLVYWIDRDFSQHSIIDRLSVLKPGFHLLEDTKSSPDGPRVGFI  65
             +RAAIN+KS D  DSRL+YW+  +F+ H I  +L+ L  GFH L    S+P G  + +I
Sbjct  41   DYRAAINVKSTDV-DSRLLYWVVENFT-HPITAKLAALPDGFHPLP---STPGGLALDYI  95

Query  66   RSNLFNVNSGRVLPQNIEGPDNNIIDLLEPEVRQAIERQAEVYVFGARFDT-KDGIHDVH  124
            R NLF+    R LP +I GPDN+I D+LEP +++AI  +A VY FG RF   ++GIHD+H
Sbjct  96   RGNLFDPTQMRPLPHDIPGPDNDINDVLEPYLQRAIAEKATVYAFGERFGPEQNGIHDIH  155

Query  125  MNQGNKGRWKG  135
            MNQGN GR+  
Sbjct  156  MNQGNSGRFAK  166



Lambda      K        H        a         alpha
   0.321    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00042979

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462949 pfam10042, DUF2278, Uncharacterized conserved protein ...  181     6e-59


>CDD:462949 pfam10042, DUF2278, Uncharacterized conserved protein (DUF2278). 
 Members of this family of hypothetical bacterial proteins 
have no known function.
Length=205

 Score = 181 bits (461),  Expect = 6e-59, Method: Composition-based stats.
 Identities = 65/131 (50%), Positives = 88/131 (67%), Gaps = 6/131 (5%)

Query  6    LFRAAINIKSGDTNDSRLVYWIDRDFSQHSIIDRLSVLKPGFHLLEDTKSSPDGPRVGFI  65
             +RAAIN+KS D  DSRL+YW+  +F+ H I  +L+ L  GFH L    S+P G  + +I
Sbjct  41   DYRAAINVKSTDV-DSRLLYWVVENFT-HPITAKLAALPDGFHPLP---STPGGLALDYI  95

Query  66   RSNLFNVNSGRVLPQNIEGPDNNIIDLLEPEVRQAIERQAEVYVFGARFDT-KDGIHDVH  124
            R NLF+    R LP +I GPDN+I D+LEP +++AI  +A VY FG RF   ++GIHD+H
Sbjct  96   RGNLFDPTQMRPLPHDIPGPDNDINDVLEPYLQRAIAEKATVYAFGERFGPEQNGIHDIH  155

Query  125  MNQGNKGRWKG  135
            MNQGN GR+  
Sbjct  156  MNQGNSGRFAK  166



Lambda      K        H        a         alpha
   0.321    0.140    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00037266

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427298 pfam03446, NAD_binding_2, NAD binding domain of 6-phos...  91.0    4e-23


>CDD:427298 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate 
dehydrogenase.  The NAD binding domain of 6-phosphogluconate 
dehydrogenase adopts a Rossmann fold.
Length=159

 Score = 91.0 bits (227),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 21/165 (13%)

Query  3    SVSIFGLGAMGTALASRFLEEKYKVAVWNRSPEKASSLLGKGATLSHTAVDGINASDLII  62
             +   GLG MG+ +A   L+  Y V V+NR+PEK   L+  GA  + +  + +   D++I
Sbjct  1    KIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAAGAIAAASPAEFVAGLDVVI  60

Query  63   ICLLDNAAVEATL--AGALDHLH-GKTIINLTNGTPDQARKLSDRFVSHGARY----VHG  115
              +   AAV+A +   G L  L  G  II+ +  +P+ AR+ +      G  +    V G
Sbjct  61   TMVPAGAAVDAVIFGEGLLPGLKPGDIIIDGSTSSPEDARRRAKELKEKGLHFLDAPVSG  120

Query  116  GIM----ATPS-MIGSPYALVLYSGSPDAFKAAEGDLSVLAKCVF  155
            G       T S M+G         G  +AF+  +  L  +  CV 
Sbjct  121  GEAGAENGTLSIMVG---------GDEEAFERVKPILEAMGACVT  156



Lambda      K        H        a         alpha
   0.317    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00037267

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        103     1e-27
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          76.1    1e-17


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 103 bits (258),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 45/133 (34%), Positives = 68/133 (51%), Gaps = 8/133 (6%)

Query  198  FGASNVINYREADLKEWGQRPENQVDLVVDCTGKKSLEDAWWCVRDGGILISICQPPEQV  257
             GA  VI+YR  D  +        VD+V+D  G ++ E +   +  GG L++I  PP   
Sbjct  1    LGADEVIDYRTTDFVQATGG--EGVDVVLDTVGGEAFEASLRVLPGGGRLVTIGGPPLSA  58

Query  258  QP-EECKGKNVRNF---FFIVSAN--RADLEKVTKLVEEGKCRGVVDSVWPLEQFEDAFK  311
                  + +  R     F  V  N     L+++  L+EEGK R V+D V+PLE+  +A +
Sbjct  59   GLLLPARKRGGRGVKYLFLFVRPNLGADILQELADLIEEGKLRPVIDRVFPLEEAAEAHR  118

Query  312  RLDEGHARGKIIL  324
             L+ G ARGKI+L
Sbjct  119  YLESGRARGKIVL  131


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 76.1 bits (188),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 39/132 (30%), Positives = 59/132 (45%), Gaps = 11/132 (8%)

Query  167  GVGIWVVQLARLAGATVIGTCG-PRNVEFVKSFGASNVINYREADLKEWGQR--PENQVD  223
            GVG+  +QLA+ AGA VI   G    +E  K  GA +VIN +E DL E  +       VD
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELAKELGADHVINPKETDLVEEIKELTGGKGVD  60

Query  224  LVVDCTG-KKSLEDAWWCVRDGG--ILISICQPPEQVQPEEC--KGKNVRNFFFIVSANR  278
            +V DC G   +LE A   +R GG  +++ +   P  +       K   +   F     + 
Sbjct  61   VVFDCVGSPATLEQALKLLRPGGRVVVVGLPGGPLPLPLAPLLLKELTILGSFL---GSP  117

Query  279  ADLEKVTKLVEE  290
             +  +   L+  
Sbjct  118  EEFPEALDLLAS  129



Lambda      K        H        a         alpha
   0.319    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00042981

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  67.1    2e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 67.1 bits (164),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 23/101 (23%), Positives = 41/101 (41%), Gaps = 2/101 (2%)

Query  186  AVQAVLLYSIAVYWCDETEKGLDLLEEAIQMALGLGMNRSNFATEHGRNDPILE-ESWRR  244
             +QA+LL  +      + +        AI++A  LG++R            I E E  RR
Sbjct  93   ILQALLLLELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRR  152

Query  245  TWWQIYITDAHIAGSTHSYPFRTDGILMDVHLPCEEEEYES  285
             +W  +  D  I+      P       +D+ LPC++++   
Sbjct  153  LFWACFYLDRLIS-LILGRPPLLSDSDIDLPLPCDDDDLWE  192



Lambda      K        H        a         alpha
   0.320    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00042980

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  67.1    2e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 67.1 bits (164),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 23/101 (23%), Positives = 41/101 (41%), Gaps = 2/101 (2%)

Query  186  AVQAVLLYSIAVYWCDETEKGLDLLEEAIQMALGLGMNRSNFATEHGRNDPILE-ESWRR  244
             +QA+LL  +      + +        AI++A  LG++R            I E E  RR
Sbjct  93   ILQALLLLELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRR  152

Query  245  TWWQIYITDAHIAGSTHSYPFRTDGILMDVHLPCEEEEYES  285
             +W  +  D  I+      P       +D+ LPC++++   
Sbjct  153  LFWACFYLDRLIS-LILGRPPLLSDSDIDLPLPCDDDDLWE  192



Lambda      K        H        a         alpha
   0.320    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0745    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00042982

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  67.1    2e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 67.1 bits (164),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 23/101 (23%), Positives = 41/101 (41%), Gaps = 2/101 (2%)

Query  186  AVQAVLLYSIAVYWCDETEKGLDLLEEAIQMALGLGMNRSNFATEHGRNDPILE-ESWRR  244
             +QA+LL  +      + +        AI++A  LG++R            I E E  RR
Sbjct  93   ILQALLLLELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRR  152

Query  245  TWWQIYITDAHIAGSTHSYPFRTDGILMDVHLPCEEEEYES  285
             +W  +  D  I+      P       +D+ LPC++++   
Sbjct  153  LFWACFYLDRLIS-LILGRPPLLSDSDIDLPLPCDDDDLWE  192



Lambda      K        H        a         alpha
   0.320    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00042983

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  67.1    2e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 67.1 bits (164),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 23/101 (23%), Positives = 41/101 (41%), Gaps = 2/101 (2%)

Query  186  AVQAVLLYSIAVYWCDETEKGLDLLEEAIQMALGLGMNRSNFATEHGRNDPILE-ESWRR  244
             +QA+LL  +      + +        AI++A  LG++R            I E E  RR
Sbjct  93   ILQALLLLELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRR  152

Query  245  TWWQIYITDAHIAGSTHSYPFRTDGILMDVHLPCEEEEYES  285
             +W  +  D  I+      P       +D+ LPC++++   
Sbjct  153  LFWACFYLDRLIS-LILGRPPLLSDSDIDLPLPCDDDDLWE  192



Lambda      K        H        a         alpha
   0.320    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00042984

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  67.1    2e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 67.1 bits (164),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 23/101 (23%), Positives = 41/101 (41%), Gaps = 2/101 (2%)

Query  186  AVQAVLLYSIAVYWCDETEKGLDLLEEAIQMALGLGMNRSNFATEHGRNDPILE-ESWRR  244
             +QA+LL  +      + +        AI++A  LG++R            I E E  RR
Sbjct  93   ILQALLLLELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRR  152

Query  245  TWWQIYITDAHIAGSTHSYPFRTDGILMDVHLPCEEEEYES  285
             +W  +  D  I+      P       +D+ LPC++++   
Sbjct  153  LFWACFYLDRLIS-LILGRPPLLSDSDIDLPLPCDDDDLWE  192



Lambda      K        H        a         alpha
   0.320    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00037268

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        103     1e-27
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          76.1    1e-17


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 103 bits (258),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 45/133 (34%), Positives = 68/133 (51%), Gaps = 8/133 (6%)

Query  198  FGASNVINYREADLKEWGQRPENQVDLVVDCTGKKSLEDAWWCVRDGGILISICQPPEQV  257
             GA  VI+YR  D  +        VD+V+D  G ++ E +   +  GG L++I  PP   
Sbjct  1    LGADEVIDYRTTDFVQATGG--EGVDVVLDTVGGEAFEASLRVLPGGGRLVTIGGPPLSA  58

Query  258  QP-EECKGKNVRNF---FFIVSAN--RADLEKVTKLVEEGKCRGVVDSVWPLEQFEDAFK  311
                  + +  R     F  V  N     L+++  L+EEGK R V+D V+PLE+  +A +
Sbjct  59   GLLLPARKRGGRGVKYLFLFVRPNLGADILQELADLIEEGKLRPVIDRVFPLEEAAEAHR  118

Query  312  RLDEGHARGKIIL  324
             L+ G ARGKI+L
Sbjct  119  YLESGRARGKIVL  131


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 76.1 bits (188),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 39/132 (30%), Positives = 59/132 (45%), Gaps = 11/132 (8%)

Query  167  GVGIWVVQLARLAGATVIGTCG-PRNVEFVKSFGASNVINYREADLKEWGQR--PENQVD  223
            GVG+  +QLA+ AGA VI   G    +E  K  GA +VIN +E DL E  +       VD
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELAKELGADHVINPKETDLVEEIKELTGGKGVD  60

Query  224  LVVDCTG-KKSLEDAWWCVRDGG--ILISICQPPEQVQPEEC--KGKNVRNFFFIVSANR  278
            +V DC G   +LE A   +R GG  +++ +   P  +       K   +   F     + 
Sbjct  61   VVFDCVGSPATLEQALKLLRPGGRVVVVGLPGGPLPLPLAPLLLKELTILGSFL---GSP  117

Query  279  ADLEKVTKLVEE  290
             +  +   L+  
Sbjct  118  EEFPEALDLLAS  129



Lambda      K        H        a         alpha
   0.319    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00042985

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  67.1    2e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 67.1 bits (164),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 23/101 (23%), Positives = 41/101 (41%), Gaps = 2/101 (2%)

Query  186  AVQAVLLYSIAVYWCDETEKGLDLLEEAIQMALGLGMNRSNFATEHGRNDPILE-ESWRR  244
             +QA+LL  +      + +        AI++A  LG++R            I E E  RR
Sbjct  93   ILQALLLLELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRR  152

Query  245  TWWQIYITDAHIAGSTHSYPFRTDGILMDVHLPCEEEEYES  285
             +W  +  D  I+      P       +D+ LPC++++   
Sbjct  153  LFWACFYLDRLIS-LILGRPPLLSDSDIDLPLPCDDDDLWE  192



Lambda      K        H        a         alpha
   0.320    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340186016


Query= TCONS_00037269

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  69.8    4e-14


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 69.8 bits (171),  Expect = 4e-14, Method: Composition-based stats.
 Identities = 28/136 (21%), Positives = 54/136 (40%), Gaps = 7/136 (5%)

Query  186  AVQAVLLYSIAVYWCDETEKGLDLLEEAIQMALGLGMNRSNFATEHGRNDPILE-ESWRR  244
             +QA+LL  +      + +        AI++A  LG++R            I E E  RR
Sbjct  93   ILQALLLLELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRR  152

Query  245  TWWQIYITDAHIAGSTHSYPFRTDGILMDVHLPCEEEEYESGNIPNPRTLEEYDMREFSG  304
             +W  +  D  I+      P       +D+ LPC++++    +  +  TL    +   S 
Sbjct  153  LFWACFYLDRLIS-LILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKS-  210

Query  305  DEREFSSFAEMVGLTR  320
               +   F  ++ L++
Sbjct  211  --IKPPLF--LIKLSK  222



Lambda      K        H        a         alpha
   0.321    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 476875994


Query= TCONS_00037270

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        103     1e-27
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          76.1    1e-17


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 103 bits (258),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 45/133 (34%), Positives = 68/133 (51%), Gaps = 8/133 (6%)

Query  198  FGASNVINYREADLKEWGQRPENQVDLVVDCTGKKSLEDAWWCVRDGGILISICQPPEQV  257
             GA  VI+YR  D  +        VD+V+D  G ++ E +   +  GG L++I  PP   
Sbjct  1    LGADEVIDYRTTDFVQATGG--EGVDVVLDTVGGEAFEASLRVLPGGGRLVTIGGPPLSA  58

Query  258  QP-EECKGKNVRNF---FFIVSAN--RADLEKVTKLVEEGKCRGVVDSVWPLEQFEDAFK  311
                  + +  R     F  V  N     L+++  L+EEGK R V+D V+PLE+  +A +
Sbjct  59   GLLLPARKRGGRGVKYLFLFVRPNLGADILQELADLIEEGKLRPVIDRVFPLEEAAEAHR  118

Query  312  RLDEGHARGKIIL  324
             L+ G ARGKI+L
Sbjct  119  YLESGRARGKIVL  131


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 76.1 bits (188),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 39/132 (30%), Positives = 59/132 (45%), Gaps = 11/132 (8%)

Query  167  GVGIWVVQLARLAGATVIGTCG-PRNVEFVKSFGASNVINYREADLKEWGQR--PENQVD  223
            GVG+  +QLA+ AGA VI   G    +E  K  GA +VIN +E DL E  +       VD
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELAKELGADHVINPKETDLVEEIKELTGGKGVD  60

Query  224  LVVDCTG-KKSLEDAWWCVRDGG--ILISICQPPEQVQPEEC--KGKNVRNFFFIVSANR  278
            +V DC G   +LE A   +R GG  +++ +   P  +       K   +   F     + 
Sbjct  61   VVFDCVGSPATLEQALKLLRPGGRVVVVGLPGGPLPLPLAPLLLKELTILGSFL---GSP  117

Query  279  ADLEKVTKLVEE  290
             +  +   L+  
Sbjct  118  EEFPEALDLLAS  129



Lambda      K        H        a         alpha
   0.319    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00042987

Length=589
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  70.6    5e-14


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 70.6 bits (173),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 28/136 (21%), Positives = 54/136 (40%), Gaps = 7/136 (5%)

Query  186  AVQAVLLYSIAVYWCDETEKGLDLLEEAIQMALGLGMNRSNFATEHGRNDPILE-ESWRR  244
             +QA+LL  +      + +        AI++A  LG++R            I E E  RR
Sbjct  93   ILQALLLLELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRR  152

Query  245  TWWQIYITDAHIAGSTHSYPFRTDGILMDVHLPCEEEEYESGNIPNPRTLEEYDMREFSG  304
             +W  +  D  I+      P       +D+ LPC++++    +  +  TL    +   S 
Sbjct  153  LFWACFYLDRLIS-LILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKS-  210

Query  305  DEREFSSFAEMVGLTR  320
               +   F  ++ L++
Sbjct  211  --IKPPLF--LIKLSK  222



Lambda      K        H        a         alpha
   0.321    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 742730716


Query= TCONS_00042986

Length=589
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  70.6    5e-14


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 70.6 bits (173),  Expect = 5e-14, Method: Composition-based stats.
 Identities = 28/136 (21%), Positives = 54/136 (40%), Gaps = 7/136 (5%)

Query  186  AVQAVLLYSIAVYWCDETEKGLDLLEEAIQMALGLGMNRSNFATEHGRNDPILE-ESWRR  244
             +QA+LL  +      + +        AI++A  LG++R            I E E  RR
Sbjct  93   ILQALLLLELYELGTGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRR  152

Query  245  TWWQIYITDAHIAGSTHSYPFRTDGILMDVHLPCEEEEYESGNIPNPRTLEEYDMREFSG  304
             +W  +  D  I+      P       +D+ LPC++++    +  +  TL    +   S 
Sbjct  153  LFWACFYLDRLIS-LILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKS-  210

Query  305  DEREFSSFAEMVGLTR  320
               +   F  ++ L++
Sbjct  211  --IKPPLF--LIKLSK  222



Lambda      K        H        a         alpha
   0.321    0.133    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 742730716


Query= TCONS_00037274

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        103     1e-27
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          76.1    1e-17


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 103 bits (258),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 45/133 (34%), Positives = 68/133 (51%), Gaps = 8/133 (6%)

Query  198  FGASNVINYREADLKEWGQRPENQVDLVVDCTGKKSLEDAWWCVRDGGILISICQPPEQV  257
             GA  VI+YR  D  +        VD+V+D  G ++ E +   +  GG L++I  PP   
Sbjct  1    LGADEVIDYRTTDFVQATGG--EGVDVVLDTVGGEAFEASLRVLPGGGRLVTIGGPPLSA  58

Query  258  QP-EECKGKNVRNF---FFIVSAN--RADLEKVTKLVEEGKCRGVVDSVWPLEQFEDAFK  311
                  + +  R     F  V  N     L+++  L+EEGK R V+D V+PLE+  +A +
Sbjct  59   GLLLPARKRGGRGVKYLFLFVRPNLGADILQELADLIEEGKLRPVIDRVFPLEEAAEAHR  118

Query  312  RLDEGHARGKIIL  324
             L+ G ARGKI+L
Sbjct  119  YLESGRARGKIVL  131


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 76.1 bits (188),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 39/132 (30%), Positives = 59/132 (45%), Gaps = 11/132 (8%)

Query  167  GVGIWVVQLARLAGATVIGTCG-PRNVEFVKSFGASNVINYREADLKEWGQR--PENQVD  223
            GVG+  +QLA+ AGA VI   G    +E  K  GA +VIN +E DL E  +       VD
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELAKELGADHVINPKETDLVEEIKELTGGKGVD  60

Query  224  LVVDCTG-KKSLEDAWWCVRDGG--ILISICQPPEQVQPEEC--KGKNVRNFFFIVSANR  278
            +V DC G   +LE A   +R GG  +++ +   P  +       K   +   F     + 
Sbjct  61   VVFDCVGSPATLEQALKLLRPGGRVVVVGLPGGPLPLPLAPLLLKELTILGSFL---GSP  117

Query  279  ADLEKVTKLVEE  290
             +  +   L+  
Sbjct  118  EEFPEALDLLAS  129



Lambda      K        H        a         alpha
   0.319    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00042988

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        103     1e-27
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          76.1    1e-17


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 103 bits (258),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 45/133 (34%), Positives = 68/133 (51%), Gaps = 8/133 (6%)

Query  198  FGASNVINYREADLKEWGQRPENQVDLVVDCTGKKSLEDAWWCVRDGGILISICQPPEQV  257
             GA  VI+YR  D  +        VD+V+D  G ++ E +   +  GG L++I  PP   
Sbjct  1    LGADEVIDYRTTDFVQATGG--EGVDVVLDTVGGEAFEASLRVLPGGGRLVTIGGPPLSA  58

Query  258  QP-EECKGKNVRNF---FFIVSAN--RADLEKVTKLVEEGKCRGVVDSVWPLEQFEDAFK  311
                  + +  R     F  V  N     L+++  L+EEGK R V+D V+PLE+  +A +
Sbjct  59   GLLLPARKRGGRGVKYLFLFVRPNLGADILQELADLIEEGKLRPVIDRVFPLEEAAEAHR  118

Query  312  RLDEGHARGKIIL  324
             L+ G ARGKI+L
Sbjct  119  YLESGRARGKIVL  131


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 76.1 bits (188),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 39/132 (30%), Positives = 59/132 (45%), Gaps = 11/132 (8%)

Query  167  GVGIWVVQLARLAGATVIGTCG-PRNVEFVKSFGASNVINYREADLKEWGQR--PENQVD  223
            GVG+  +QLA+ AGA VI   G    +E  K  GA +VIN +E DL E  +       VD
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELAKELGADHVINPKETDLVEEIKELTGGKGVD  60

Query  224  LVVDCTG-KKSLEDAWWCVRDGG--ILISICQPPEQVQPEEC--KGKNVRNFFFIVSANR  278
            +V DC G   +LE A   +R GG  +++ +   P  +       K   +   F     + 
Sbjct  61   VVFDCVGSPATLEQALKLLRPGGRVVVVGLPGGPLPLPLAPLLLKELTILGSFL---GSP  117

Query  279  ADLEKVTKLVEE  290
             +  +   L+  
Sbjct  118  EEFPEALDLLAS  129



Lambda      K        H        a         alpha
   0.319    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00037275

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        103     1e-27
CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase          76.1    1e-17


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 103 bits (258),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 45/133 (34%), Positives = 68/133 (51%), Gaps = 8/133 (6%)

Query  198  FGASNVINYREADLKEWGQRPENQVDLVVDCTGKKSLEDAWWCVRDGGILISICQPPEQV  257
             GA  VI+YR  D  +        VD+V+D  G ++ E +   +  GG L++I  PP   
Sbjct  1    LGADEVIDYRTTDFVQATGG--EGVDVVLDTVGGEAFEASLRVLPGGGRLVTIGGPPLSA  58

Query  258  QP-EECKGKNVRNF---FFIVSAN--RADLEKVTKLVEEGKCRGVVDSVWPLEQFEDAFK  311
                  + +  R     F  V  N     L+++  L+EEGK R V+D V+PLE+  +A +
Sbjct  59   GLLLPARKRGGRGVKYLFLFVRPNLGADILQELADLIEEGKLRPVIDRVFPLEEAAEAHR  118

Query  312  RLDEGHARGKIIL  324
             L+ G ARGKI+L
Sbjct  119  YLESGRARGKIVL  131


>CDD:395057 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.  
Length=129

 Score = 76.1 bits (188),  Expect = 1e-17, Method: Composition-based stats.
 Identities = 39/132 (30%), Positives = 59/132 (45%), Gaps = 11/132 (8%)

Query  167  GVGIWVVQLARLAGATVIGTCG-PRNVEFVKSFGASNVINYREADLKEWGQR--PENQVD  223
            GVG+  +QLA+ AGA VI   G    +E  K  GA +VIN +E DL E  +       VD
Sbjct  1    GVGLAAIQLAKAAGAKVIAVDGSEEKLELAKELGADHVINPKETDLVEEIKELTGGKGVD  60

Query  224  LVVDCTG-KKSLEDAWWCVRDGG--ILISICQPPEQVQPEEC--KGKNVRNFFFIVSANR  278
            +V DC G   +LE A   +R GG  +++ +   P  +       K   +   F     + 
Sbjct  61   VVFDCVGSPATLEQALKLLRPGGRVVVVGLPGGPLPLPLAPLLLKELTILGSFL---GSP  117

Query  279  ADLEKVTKLVEE  290
             +  +   L+  
Sbjct  118  EEFPEALDLLAS  129



Lambda      K        H        a         alpha
   0.319    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 387006174


Query= TCONS_00037276

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00042989

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465220 pfam16656, Pur_ac_phosph_N, Purple acid Phosphatase, N...  58.6    2e-11


>CDD:465220 pfam16656, Pur_ac_phosph_N, Purple acid Phosphatase, N-terminal 
domain.  This domain is found at the N-terminus of Purple 
acid phosphatase proteins.
Length=93

 Score = 58.6 bits (142),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query  75   ISLSYLPDGMHVHYQTPFGLGVRPSVKWGKDPKHLDRVAHGYTHTYDRTPPCSAIKAVTQ  134
            +SL+     M V + TP      P V++G     L   A   + TY              
Sbjct  6    LSLTGDSTSMTVSWVTP-SAVTSPVVQYGTSSSALTSTATATSSTYTTG---------DG  55

Query  135  CSQFFHEVSLDKLESGTTYYYQIPAANGTTQSEVLSFKT  173
             + + H  +L  LE GTTYYY++   +    SEV SF T
Sbjct  56   GTGYIHRATLTGLEPGTTYYYRV-GDDNGGWSEVYSFTT  93



Lambda      K        H        a         alpha
   0.316    0.134    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 634393654


Query= TCONS_00037277

Length=419


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 512602860


Query= TCONS_00037278

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465220 pfam16656, Pur_ac_phosph_N, Purple acid Phosphatase, N...  58.6    2e-11


>CDD:465220 pfam16656, Pur_ac_phosph_N, Purple acid Phosphatase, N-terminal 
domain.  This domain is found at the N-terminus of Purple 
acid phosphatase proteins.
Length=93

 Score = 58.6 bits (142),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query  75   ISLSYLPDGMHVHYQTPFGLGVRPSVKWGKDPKHLDRVAHGYTHTYDRTPPCSAIKAVTQ  134
            +SL+     M V + TP      P V++G     L   A   + TY              
Sbjct  6    LSLTGDSTSMTVSWVTP-SAVTSPVVQYGTSSSALTSTATATSSTYTTG---------DG  55

Query  135  CSQFFHEVSLDKLESGTTYYYQIPAANGTTQSEVLSFKT  173
             + + H  +L  LE GTTYYY++   +    SEV SF T
Sbjct  56   GTGYIHRATLTGLEPGTTYYYRV-GDDNGGWSEVYSFTT  93



Lambda      K        H        a         alpha
   0.315    0.133    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 772619276


Query= TCONS_00042990

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00037280

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  111     2e-27


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 111 bits (279),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 135/349 (39%), Gaps = 37/349 (11%)

Query  69   RLHEKYGPIVRI--SPTELH-INDPDYYEVLYSRDS------PRNKYEYYQKTLNAPLAL  119
            +L +KYGPI R+   P  +  ++ P+  + +  +        P   +    +       +
Sbjct  28   KLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGI  87

Query  120  LNTIDHHLHRQLRAQLNPFFSSTRIRRQEPAIKALVNKLCRRLDELKNTGQPLNIEHALT  179
            +   +    RQLR  L P F+S      EP ++     L  +L +       ++I   L 
Sbjct  88   VFA-NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLF  146

Query  180  CYTTDVITDYSMGDGYHYLDAPDFIP--QWHGTLNGTAKT----MVFIRPVAWALPLLLA  233
                +VI     G+ +  L+ P F+   +    L+    +    ++ + P+         
Sbjct  147  RAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKY------  200

Query  234  LPEAVTAWLNPGMELFFDFQRRCRKMIKRIVAAHNEKGNQGVQNE-GFVNIFDDILRSNL  292
                   +  P        +++ + ++ +++    E  +   ++   F++    +L    
Sbjct  201  -------FPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDAL--LLAKEE  251

Query  293  PAKNK-SETRLAQEMQVLVSAGAETTAKAITYILFYLLNDPETMAKLKAELETV---GED  348
               +K ++  L   +  L  AG +TT+  +++ L+ L   PE   KL+ E++ V      
Sbjct  252  EDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRS  311

Query  349  PALVQLEQLPYLTGVMLEGIRLSYGVSARLPRIAPYNALKFRDWTIPPG  397
            P    L+ +PYL  V+ E +RL   V   LPR           + IP G
Sbjct  312  PTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVT-KDTVIPGYLIPKG  359



Lambda      K        H        a         alpha
   0.324    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00037279

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  111     2e-27


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 111 bits (279),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 135/349 (39%), Gaps = 37/349 (11%)

Query  69   RLHEKYGPIVRI--SPTELH-INDPDYYEVLYSRDS------PRNKYEYYQKTLNAPLAL  119
            +L +KYGPI R+   P  +  ++ P+  + +  +        P   +    +       +
Sbjct  28   KLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGI  87

Query  120  LNTIDHHLHRQLRAQLNPFFSSTRIRRQEPAIKALVNKLCRRLDELKNTGQPLNIEHALT  179
            +   +    RQLR  L P F+S      EP ++     L  +L +       ++I   L 
Sbjct  88   VFA-NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLF  146

Query  180  CYTTDVITDYSMGDGYHYLDAPDFIP--QWHGTLNGTAKT----MVFIRPVAWALPLLLA  233
                +VI     G+ +  L+ P F+   +    L+    +    ++ + P+         
Sbjct  147  RAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKY------  200

Query  234  LPEAVTAWLNPGMELFFDFQRRCRKMIKRIVAAHNEKGNQGVQNE-GFVNIFDDILRSNL  292
                   +  P        +++ + ++ +++    E  +   ++   F++    +L    
Sbjct  201  -------FPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDAL--LLAKEE  251

Query  293  PAKNK-SETRLAQEMQVLVSAGAETTAKAITYILFYLLNDPETMAKLKAELETV---GED  348
               +K ++  L   +  L  AG +TT+  +++ L+ L   PE   KL+ E++ V      
Sbjct  252  EDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRS  311

Query  349  PALVQLEQLPYLTGVMLEGIRLSYGVSARLPRIAPYNALKFRDWTIPPG  397
            P    L+ +PYL  V+ E +RL   V   LPR           + IP G
Sbjct  312  PTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVT-KDTVIPGYLIPKG  359



Lambda      K        H        a         alpha
   0.324    0.140    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 490856072


Query= TCONS_00037291

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  189     6e-55


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 189 bits (481),  Expect = 6e-55, Method: Composition-based stats.
 Identities = 94/429 (22%), Positives = 178/429 (41%), Gaps = 37/429 (9%)

Query  69   RLHEKYGPIVRI--SPTELH-INDPDYYEVLYSRDS------PRNKYEYYQKTLNAPLAL  119
            +L +KYGPI R+   P  +  ++ P+  + +  +        P   +    +       +
Sbjct  28   KLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGI  87

Query  120  LNTIDHHLHRQLRAQLNPFFSSTRIRRQEPAIKALVNKLCRRLDELKNTGQPLNIEHALT  179
            +   +    RQLR  L P F+S      EP ++     L  +L +       ++I   L 
Sbjct  88   VFA-NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLF  146

Query  180  CYTTDVITDYSMGDGYHYLDAPDFIP--QWHGTLNGTAKT----MVFIRPVAWALPLLLA  233
                +VI     G+ +  L+ P F+   +    L+    +    ++ + P+         
Sbjct  147  RAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKY------  200

Query  234  LPEAVTAWLNPGMELFFDFQRRCRKMIKRIVAAHNEKGNQGVQNE-GFVNIFDDILRSNL  292
                   +  P        +++ + ++ +++    E  +   ++   F++    +L    
Sbjct  201  -------FPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDAL--LLAKEE  251

Query  293  PAKNK-SETRLAQEMQVLVSAGAETTAKAITYILFYLLNDPETMAKLKAELETV---GED  348
               +K ++  L   +  L  AG +TT+  +++ L+ L   PE   KL+ E++ V      
Sbjct  252  EDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRS  311

Query  349  PALVQLEQLPYLTGVMLEGIRLSYGVSARLPRIAPYNALKFRDWTIPPGVPVSMSCLLMH  408
            P    L+ +PYL  V+ E +RL   V   LPR           + IP G  V ++   +H
Sbjct  312  PTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVT-KDTVIPGYLIPKGTLVIVNLYALH  370

Query  409  HNETVFPDSHRFKPERWLDPAERKRLEKYMVAFSKGSRQCIGMHLAKAEILLAVSTLLRR  468
             +  VFP+   F PER+LD   + R     + F  G R C+G  LA+ E+ L ++TLL+ 
Sbjct  371  RDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQN  430

Query  469  MDLELYETT  477
             ++EL   T
Sbjct  431  FEVELPPGT  439



Lambda      K        H        a         alpha
   0.323    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 619252994


Query= TCONS_00037281

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  75.8    2e-15


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 75.8 bits (187),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 48/288 (17%), Positives = 109/288 (38%), Gaps = 33/288 (11%)

Query  118  GPIVRI--SPTELH-INDPDYYEVLYSRDS------PRNKYEYYQKTLNAPLALLNTIDH  168
            GPI R+   P  +  ++ P+  + +  +        P   +    +       ++   + 
Sbjct  34   GPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGIVFA-NG  92

Query  169  HLHRQLRAQLNPFFSSTRIRRQEPAIKALVNKLCRRLDELKNTGQPLNIEHALTCYTTDV  228
               RQLR  L P F+S      EP ++     L  +L +       ++I   L     +V
Sbjct  93   PRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLFRAALNV  152

Query  229  ITDYSMGDGYHYLDAPDFIP--QWHGTLNGTAKT----MVFIRPVAWALPLLLALPEAVT  282
            I     G+ +  L+ P F+   +    L+    +    ++ + P+               
Sbjct  153  ICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKY------------  200

Query  283  AWLNPGMELFFDFQRRCRKMIKRIVAAHNEKGNQGVQNE-GFVNIFDDILRSNLPAKNK-  340
             +  P        +++ + ++ +++    E  +   ++   F++    +L       +K 
Sbjct  201  -FPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDAL--LLAKEEEDGSKL  257

Query  341  SETRLAQEMQVLVSAGAETTAKAITYILFYLLNDPETMAKLKAELETV  388
            ++  L   +  L  AG +TT+  +++ L+ L   PE   KL+ E++ V
Sbjct  258  TDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEV  305



Lambda      K        H        a         alpha
   0.323    0.138    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 483089362


Query= TCONS_00037283

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  168     1e-47


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 168 bits (428),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 84/404 (21%), Positives = 162/404 (40%), Gaps = 37/404 (9%)

Query  69   RLHEKYGPIVRI--SPTELH-INDPDYYEVLYSRDS------PRNKYEYYQKTLNAPLAL  119
            +L +KYGPI R+   P  +  ++ P+  + +  +        P   +    +       +
Sbjct  28   KLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGI  87

Query  120  LNTIDHHLHRQLRAQLNPFFSSTRIRRQEPAIKALVNKLCRRLDELKNTGQPLNIEHALT  179
            +   +    RQLR  L P F+S      EP ++     L  +L +       ++I   L 
Sbjct  88   VFA-NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLF  146

Query  180  CYTTDVITDYSMGDGYHYLDAPDFIP--QWHGTLNGTAKT----MVFIRPVAWALPLLLA  233
                +VI     G+ +  L+ P F+   +    L+    +    ++ + P+         
Sbjct  147  RAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKY------  200

Query  234  LPEAVTAWLNPGMELFFDFQRRCRKMIKRIVAAHNEKGNQGVQNE-GFVNIFDDILRSNL  292
                   +  P        +++ + ++ +++    E  +   ++   F++    +L    
Sbjct  201  -------FPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDAL--LLAKEE  251

Query  293  PAKNK-SETRLAQEMQVLVSAGAETTAKAITYILFYLLNDPETMAKLKAELETV---GED  348
               +K ++  L   +  L  AG +TT+  +++ L+ L   PE   KL+ E++ V      
Sbjct  252  EDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRS  311

Query  349  PALVQLEQLPYLTGVMLEGIRLSYGVSARLPRIAPYNALKFRDWTIPPGVPVSMSCLLMH  408
            P    L+ +PYL  V+ E +RL   V   LPR           + IP G  V ++   +H
Sbjct  312  PTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVT-KDTVIPGYLIPKGTLVIVNLYALH  370

Query  409  HNETVFPDSHRFKPERWLDPAERKRLEKYMVAFSKGSRQCIGMQ  452
             +  VFP+   F PER+LD   + R     + F  G R C+G +
Sbjct  371  RDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGER  414



Lambda      K        H        a         alpha
   0.324    0.139    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00037282

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  168     1e-47


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 168 bits (428),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 84/404 (21%), Positives = 162/404 (40%), Gaps = 37/404 (9%)

Query  69   RLHEKYGPIVRI--SPTELH-INDPDYYEVLYSRDS------PRNKYEYYQKTLNAPLAL  119
            +L +KYGPI R+   P  +  ++ P+  + +  +        P   +    +       +
Sbjct  28   KLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGI  87

Query  120  LNTIDHHLHRQLRAQLNPFFSSTRIRRQEPAIKALVNKLCRRLDELKNTGQPLNIEHALT  179
            +   +    RQLR  L P F+S      EP ++     L  +L +       ++I   L 
Sbjct  88   VFA-NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLF  146

Query  180  CYTTDVITDYSMGDGYHYLDAPDFIP--QWHGTLNGTAKT----MVFIRPVAWALPLLLA  233
                +VI     G+ +  L+ P F+   +    L+    +    ++ + P+         
Sbjct  147  RAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKY------  200

Query  234  LPEAVTAWLNPGMELFFDFQRRCRKMIKRIVAAHNEKGNQGVQNE-GFVNIFDDILRSNL  292
                   +  P        +++ + ++ +++    E  +   ++   F++    +L    
Sbjct  201  -------FPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDAL--LLAKEE  251

Query  293  PAKNK-SETRLAQEMQVLVSAGAETTAKAITYILFYLLNDPETMAKLKAELETV---GED  348
               +K ++  L   +  L  AG +TT+  +++ L+ L   PE   KL+ E++ V      
Sbjct  252  EDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRS  311

Query  349  PALVQLEQLPYLTGVMLEGIRLSYGVSARLPRIAPYNALKFRDWTIPPGVPVSMSCLLMH  408
            P    L+ +PYL  V+ E +RL   V   LPR           + IP G  V ++   +H
Sbjct  312  PTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVT-KDTVIPGYLIPKGTLVIVNLYALH  370

Query  409  HNETVFPDSHRFKPERWLDPAERKRLEKYMVAFSKGSRQCIGMQ  452
             +  VFP+   F PER+LD   + R     + F  G R C+G +
Sbjct  371  RDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGER  414



Lambda      K        H        a         alpha
   0.324    0.139    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 572071592


Query= TCONS_00042991

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00037284

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00042992

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  92.0    6e-21


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 92.0 bits (229),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 56/312 (18%), Positives = 121/312 (39%), Gaps = 36/312 (12%)

Query  69   RLHEKYGPIVRI--SPTELH-INDPDYYEVLYSRDS------PRNKYEYYQKTLNAPLAL  119
            +L +KYGPI R+   P  +  ++ P+  + +  +        P   +    +       +
Sbjct  28   KLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGI  87

Query  120  LNTIDHHLHRQLRAQLNPFFSSTRIRRQEPAIKALVNKLCRRLDELKNTGQPLNIEHALT  179
            +   +    RQLR  L P F+S      EP ++     L  +L +       ++I   L 
Sbjct  88   VFA-NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLF  146

Query  180  CYTTDVITDYSMGDGYHYLDAPDFIP--QWHGTLNGTAKT----MVFIRPVAWALPLLLA  233
                +VI     G+ +  L+ P F+   +    L+    +    ++ + P+         
Sbjct  147  RAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKY------  200

Query  234  LPEAVTAWLNPGMELFFDFQRRCRKMIKRIVAAHNEKGNQGVQNE-GFVNIFDDILRSNL  292
                   +  P        +++ + ++ +++    E  +   ++   F++    +L    
Sbjct  201  -------FPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDAL--LLAKEE  251

Query  293  PAKNK-SETRLAQEMQVLVSAGAETTAKAITYILFYLLNDPETMAKLKAELETV---GED  348
               +K ++  L   +  L  AG +TT+  +++ L+ L   PE   KL+ E++ V      
Sbjct  252  EDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRS  311

Query  349  PALVQLEQLPYL  360
            P    L+ +PYL
Sbjct  312  PTYDDLQNMPYL  323



Lambda      K        H        a         alpha
   0.323    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00042993

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00037285

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.139    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00042996

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  189     7e-55


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 189 bits (481),  Expect = 7e-55, Method: Composition-based stats.
 Identities = 94/429 (22%), Positives = 178/429 (41%), Gaps = 37/429 (9%)

Query  69   RLHEKYGPIVRI--SPTELH-INDPDYYEVLYSRDS------PRNKYEYYQKTLNAPLAL  119
            +L +KYGPI R+   P  +  ++ P+  + +  +        P   +    +       +
Sbjct  28   KLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGI  87

Query  120  LNTIDHHLHRQLRAQLNPFFSSTRIRRQEPAIKALVNKLCRRLDELKNTGQPLNIEHALT  179
            +   +    RQLR  L P F+S      EP ++     L  +L +       ++I   L 
Sbjct  88   VFA-NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLF  146

Query  180  CYTTDVITDYSMGDGYHYLDAPDFIP--QWHGTLNGTAKT----MVFIRPVAWALPLLLA  233
                +VI     G+ +  L+ P F+   +    L+    +    ++ + P+         
Sbjct  147  RAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKY------  200

Query  234  LPEAVTAWLNPGMELFFDFQRRCRKMIKRIVAAHNEKGNQGVQNE-GFVNIFDDILRSNL  292
                   +  P        +++ + ++ +++    E  +   ++   F++    +L    
Sbjct  201  -------FPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDAL--LLAKEE  251

Query  293  PAKNK-SETRLAQEMQVLVSAGAETTAKAITYILFYLLNDPETMAKLKAELETV---GED  348
               +K ++  L   +  L  AG +TT+  +++ L+ L   PE   KL+ E++ V      
Sbjct  252  EDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRS  311

Query  349  PALVQLEQLPYLTGVMLEGIRLSYGVSARLPRIAPYNALKFRDWTIPPGVPVSMSCLLMH  408
            P    L+ +PYL  V+ E +RL   V   LPR           + IP G  V ++   +H
Sbjct  312  PTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVT-KDTVIPGYLIPKGTLVIVNLYALH  370

Query  409  HNETVFPDSHRFKPERWLDPAERKRLEKYMVAFSKGSRQCIGMHLAKAEILLAVSTLLRR  468
             +  VFP+   F PER+LD   + R     + F  G R C+G  LA+ E+ L ++TLL+ 
Sbjct  371  RDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQN  430

Query  469  MDLELYETT  477
             ++EL   T
Sbjct  431  FEVELPPGT  439



Lambda      K        H        a         alpha
   0.323    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00042995

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  189     7e-55


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 189 bits (481),  Expect = 7e-55, Method: Composition-based stats.
 Identities = 94/429 (22%), Positives = 178/429 (41%), Gaps = 37/429 (9%)

Query  69   RLHEKYGPIVRI--SPTELH-INDPDYYEVLYSRDS------PRNKYEYYQKTLNAPLAL  119
            +L +KYGPI R+   P  +  ++ P+  + +  +        P   +    +       +
Sbjct  28   KLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGI  87

Query  120  LNTIDHHLHRQLRAQLNPFFSSTRIRRQEPAIKALVNKLCRRLDELKNTGQPLNIEHALT  179
            +   +    RQLR  L P F+S      EP ++     L  +L +       ++I   L 
Sbjct  88   VFA-NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLF  146

Query  180  CYTTDVITDYSMGDGYHYLDAPDFIP--QWHGTLNGTAKT----MVFIRPVAWALPLLLA  233
                +VI     G+ +  L+ P F+   +    L+    +    ++ + P+         
Sbjct  147  RAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKY------  200

Query  234  LPEAVTAWLNPGMELFFDFQRRCRKMIKRIVAAHNEKGNQGVQNE-GFVNIFDDILRSNL  292
                   +  P        +++ + ++ +++    E  +   ++   F++    +L    
Sbjct  201  -------FPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDAL--LLAKEE  251

Query  293  PAKNK-SETRLAQEMQVLVSAGAETTAKAITYILFYLLNDPETMAKLKAELETV---GED  348
               +K ++  L   +  L  AG +TT+  +++ L+ L   PE   KL+ E++ V      
Sbjct  252  EDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRS  311

Query  349  PALVQLEQLPYLTGVMLEGIRLSYGVSARLPRIAPYNALKFRDWTIPPGVPVSMSCLLMH  408
            P    L+ +PYL  V+ E +RL   V   LPR           + IP G  V ++   +H
Sbjct  312  PTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVT-KDTVIPGYLIPKGTLVIVNLYALH  370

Query  409  HNETVFPDSHRFKPERWLDPAERKRLEKYMVAFSKGSRQCIGMHLAKAEILLAVSTLLRR  468
             +  VFP+   F PER+LD   + R     + F  G R C+G  LA+ E+ L ++TLL+ 
Sbjct  371  RDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQN  430

Query  469  MDLELYETT  477
             ++EL   T
Sbjct  431  FEVELPPGT  439



Lambda      K        H        a         alpha
   0.323    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0724    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00037286

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  189     7e-55


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 189 bits (481),  Expect = 7e-55, Method: Composition-based stats.
 Identities = 94/429 (22%), Positives = 178/429 (41%), Gaps = 37/429 (9%)

Query  69   RLHEKYGPIVRI--SPTELH-INDPDYYEVLYSRDS------PRNKYEYYQKTLNAPLAL  119
            +L +KYGPI R+   P  +  ++ P+  + +  +        P   +    +       +
Sbjct  28   KLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGI  87

Query  120  LNTIDHHLHRQLRAQLNPFFSSTRIRRQEPAIKALVNKLCRRLDELKNTGQPLNIEHALT  179
            +   +    RQLR  L P F+S      EP ++     L  +L +       ++I   L 
Sbjct  88   VFA-NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLF  146

Query  180  CYTTDVITDYSMGDGYHYLDAPDFIP--QWHGTLNGTAKT----MVFIRPVAWALPLLLA  233
                +VI     G+ +  L+ P F+   +    L+    +    ++ + P+         
Sbjct  147  RAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKY------  200

Query  234  LPEAVTAWLNPGMELFFDFQRRCRKMIKRIVAAHNEKGNQGVQNE-GFVNIFDDILRSNL  292
                   +  P        +++ + ++ +++    E  +   ++   F++    +L    
Sbjct  201  -------FPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDAL--LLAKEE  251

Query  293  PAKNK-SETRLAQEMQVLVSAGAETTAKAITYILFYLLNDPETMAKLKAELETV---GED  348
               +K ++  L   +  L  AG +TT+  +++ L+ L   PE   KL+ E++ V      
Sbjct  252  EDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRS  311

Query  349  PALVQLEQLPYLTGVMLEGIRLSYGVSARLPRIAPYNALKFRDWTIPPGVPVSMSCLLMH  408
            P    L+ +PYL  V+ E +RL   V   LPR           + IP G  V ++   +H
Sbjct  312  PTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVT-KDTVIPGYLIPKGTLVIVNLYALH  370

Query  409  HNETVFPDSHRFKPERWLDPAERKRLEKYMVAFSKGSRQCIGMHLAKAEILLAVSTLLRR  468
             +  VFP+   F PER+LD   + R     + F  G R C+G  LA+ E+ L ++TLL+ 
Sbjct  371  RDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQN  430

Query  469  MDLELYETT  477
             ++EL   T
Sbjct  431  FEVELPPGT  439



Lambda      K        H        a         alpha
   0.323    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00037288

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  92.0    6e-21


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 92.0 bits (229),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 56/312 (18%), Positives = 121/312 (39%), Gaps = 36/312 (12%)

Query  69   RLHEKYGPIVRI--SPTELH-INDPDYYEVLYSRDS------PRNKYEYYQKTLNAPLAL  119
            +L +KYGPI R+   P  +  ++ P+  + +  +        P   +    +       +
Sbjct  28   KLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGI  87

Query  120  LNTIDHHLHRQLRAQLNPFFSSTRIRRQEPAIKALVNKLCRRLDELKNTGQPLNIEHALT  179
            +   +    RQLR  L P F+S      EP ++     L  +L +       ++I   L 
Sbjct  88   VFA-NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLF  146

Query  180  CYTTDVITDYSMGDGYHYLDAPDFIP--QWHGTLNGTAKT----MVFIRPVAWALPLLLA  233
                +VI     G+ +  L+ P F+   +    L+    +    ++ + P+         
Sbjct  147  RAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKY------  200

Query  234  LPEAVTAWLNPGMELFFDFQRRCRKMIKRIVAAHNEKGNQGVQNE-GFVNIFDDILRSNL  292
                   +  P        +++ + ++ +++    E  +   ++   F++    +L    
Sbjct  201  -------FPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDAL--LLAKEE  251

Query  293  PAKNK-SETRLAQEMQVLVSAGAETTAKAITYILFYLLNDPETMAKLKAELETV---GED  348
               +K ++  L   +  L  AG +TT+  +++ L+ L   PE   KL+ E++ V      
Sbjct  252  EDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRS  311

Query  349  PALVQLEQLPYL  360
            P    L+ +PYL
Sbjct  312  PTYDDLQNMPYL  323



Lambda      K        H        a         alpha
   0.323    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00037287

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  92.0    6e-21


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 92.0 bits (229),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 56/312 (18%), Positives = 121/312 (39%), Gaps = 36/312 (12%)

Query  69   RLHEKYGPIVRI--SPTELH-INDPDYYEVLYSRDS------PRNKYEYYQKTLNAPLAL  119
            +L +KYGPI R+   P  +  ++ P+  + +  +        P   +    +       +
Sbjct  28   KLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGI  87

Query  120  LNTIDHHLHRQLRAQLNPFFSSTRIRRQEPAIKALVNKLCRRLDELKNTGQPLNIEHALT  179
            +   +    RQLR  L P F+S      EP ++     L  +L +       ++I   L 
Sbjct  88   VFA-NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLF  146

Query  180  CYTTDVITDYSMGDGYHYLDAPDFIP--QWHGTLNGTAKT----MVFIRPVAWALPLLLA  233
                +VI     G+ +  L+ P F+   +    L+    +    ++ + P+         
Sbjct  147  RAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKY------  200

Query  234  LPEAVTAWLNPGMELFFDFQRRCRKMIKRIVAAHNEKGNQGVQNE-GFVNIFDDILRSNL  292
                   +  P        +++ + ++ +++    E  +   ++   F++    +L    
Sbjct  201  -------FPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDAL--LLAKEE  251

Query  293  PAKNK-SETRLAQEMQVLVSAGAETTAKAITYILFYLLNDPETMAKLKAELETV---GED  348
               +K ++  L   +  L  AG +TT+  +++ L+ L   PE   KL+ E++ V      
Sbjct  252  EDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRS  311

Query  349  PALVQLEQLPYL  360
            P    L+ +PYL
Sbjct  312  PTYDDLQNMPYL  323



Lambda      K        H        a         alpha
   0.323    0.138    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00037290

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  189     6e-55


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 189 bits (481),  Expect = 6e-55, Method: Composition-based stats.
 Identities = 94/429 (22%), Positives = 178/429 (41%), Gaps = 37/429 (9%)

Query  69   RLHEKYGPIVRI--SPTELH-INDPDYYEVLYSRDS------PRNKYEYYQKTLNAPLAL  119
            +L +KYGPI R+   P  +  ++ P+  + +  +        P   +    +       +
Sbjct  28   KLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGI  87

Query  120  LNTIDHHLHRQLRAQLNPFFSSTRIRRQEPAIKALVNKLCRRLDELKNTGQPLNIEHALT  179
            +   +    RQLR  L P F+S      EP ++     L  +L +       ++I   L 
Sbjct  88   VFA-NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLF  146

Query  180  CYTTDVITDYSMGDGYHYLDAPDFIP--QWHGTLNGTAKT----MVFIRPVAWALPLLLA  233
                +VI     G+ +  L+ P F+   +    L+    +    ++ + P+         
Sbjct  147  RAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKY------  200

Query  234  LPEAVTAWLNPGMELFFDFQRRCRKMIKRIVAAHNEKGNQGVQNE-GFVNIFDDILRSNL  292
                   +  P        +++ + ++ +++    E  +   ++   F++    +L    
Sbjct  201  -------FPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDAL--LLAKEE  251

Query  293  PAKNK-SETRLAQEMQVLVSAGAETTAKAITYILFYLLNDPETMAKLKAELETV---GED  348
               +K ++  L   +  L  AG +TT+  +++ L+ L   PE   KL+ E++ V      
Sbjct  252  EDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRS  311

Query  349  PALVQLEQLPYLTGVMLEGIRLSYGVSARLPRIAPYNALKFRDWTIPPGVPVSMSCLLMH  408
            P    L+ +PYL  V+ E +RL   V   LPR           + IP G  V ++   +H
Sbjct  312  PTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVT-KDTVIPGYLIPKGTLVIVNLYALH  370

Query  409  HNETVFPDSHRFKPERWLDPAERKRLEKYMVAFSKGSRQCIGMHLAKAEILLAVSTLLRR  468
             +  VFP+   F PER+LD   + R     + F  G R C+G  LA+ E+ L ++TLL+ 
Sbjct  371  RDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQN  430

Query  469  MDLELYETT  477
             ++EL   T
Sbjct  431  FEVELPPGT  439



Lambda      K        H        a         alpha
   0.323    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 619252994


Query= TCONS_00037289

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  96.2    2e-22


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 96.2 bits (240),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 59/322 (18%), Positives = 126/322 (39%), Gaps = 36/322 (11%)

Query  69   RLHEKYGPIVRI--SPTELH-INDPDYYEVLYSRDS------PRNKYEYYQKTLNAPLAL  119
            +L +KYGPI R+   P  +  ++ P+  + +  +        P   +    +       +
Sbjct  28   KLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGI  87

Query  120  LNTIDHHLHRQLRAQLNPFFSSTRIRRQEPAIKALVNKLCRRLDELKNTGQPLNIEHALT  179
            +   +    RQLR  L P F+S      EP ++     L  +L +       ++I   L 
Sbjct  88   VFA-NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLF  146

Query  180  CYTTDVITDYSMGDGYHYLDAPDFIP--QWHGTLNGTAKT----MVFIRPVAWALPLLLA  233
                +VI     G+ +  L+ P F+   +    L+    +    ++ + P+         
Sbjct  147  RAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKY------  200

Query  234  LPEAVTAWLNPGMELFFDFQRRCRKMIKRIVAAHNEKGNQGVQNE-GFVNIFDDILRSNL  292
                   +  P        +++ + ++ +++    E  +   ++   F++    +L    
Sbjct  201  -------FPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDAL--LLAKEE  251

Query  293  PAKNK-SETRLAQEMQVLVSAGAETTAKAITYILFYLLNDPETMAKLKAELETV---GED  348
               +K ++  L   +  L  AG +TT+  +++ L+ L   PE   KL+ E++ V      
Sbjct  252  EDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRS  311

Query  349  PALVQLEQLPYLTGVMLEGIRY  370
            P    L+ +PYL  V+ E +R 
Sbjct  312  PTYDDLQNMPYLDAVIKETLRL  333



Lambda      K        H        a         alpha
   0.323    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00042998

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  176     6e-50


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 176 bits (449),  Expect = 6e-50, Method: Composition-based stats.
 Identities = 91/423 (22%), Positives = 173/423 (41%), Gaps = 37/423 (9%)

Query  118  GPIVRI--SPTELH-INDPDYYEVLYSRDS------PRNKYEYYQKTLNAPLALLNTIDH  168
            GPI R+   P  +  ++ P+  + +  +        P   +    +       ++   + 
Sbjct  34   GPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGIVFA-NG  92

Query  169  HLHRQLRAQLNPFFSSTRIRRQEPAIKALVNKLCRRLDELKNTGQPLNIEHALTCYTTDV  228
               RQLR  L P F+S      EP ++     L  +L +       ++I   L     +V
Sbjct  93   PRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLFRAALNV  152

Query  229  ITDYSMGDGYHYLDAPDFIP--QWHGTLNGTAKT----MVFIRPVAWALPLLLALPEAVT  282
            I     G+ +  L+ P F+   +    L+    +    ++ + P+               
Sbjct  153  ICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKY------------  200

Query  283  AWLNPGMELFFDFQRRCRKMIKRIVAAHNEKGNQGVQNE-GFVNIFDDILRSNLPAKNK-  340
             +  P        +++ + ++ +++    E  +   ++   F++    +L       +K 
Sbjct  201  -FPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDAL--LLAKEEEDGSKL  257

Query  341  SETRLAQEMQVLVSAGAETTAKAITYILFYLLNDPETMAKLKAELETV---GEDPALVQL  397
            ++  L   +  L  AG +TT+  +++ L+ L   PE   KL+ E++ V      P    L
Sbjct  258  TDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDDL  317

Query  398  EQLPYLTGVMLEGIRLSYGVSARLPRIAPYNALKFRDWTIPPGVCPIMSCLLMHHNETVF  457
            + +PYL  V+ E +RL   V   LPR           + IP G   I++   +H +  VF
Sbjct  318  QNMPYLDAVIKETLRLHPVVPLLLPREVT-KDTVIPGYLIPKGTLVIVNLYALHRDPEVF  376

Query  458  PDSHRFKPERWLDPAERKRLEKYMVAFSKGSRQCIGMHLAKAEILLAVSTLLRRMDLELY  517
            P+   F PER+LD   + R     + F  G R C+G  LA+ E+ L ++TLL+  ++EL 
Sbjct  377  PNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELP  436

Query  518  ETT  520
              T
Sbjct  437  PGT  439



Lambda      K        H        a         alpha
   0.324    0.139    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 681459168


Query= TCONS_00042999

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  189     7e-55


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 189 bits (481),  Expect = 7e-55, Method: Composition-based stats.
 Identities = 94/429 (22%), Positives = 178/429 (41%), Gaps = 37/429 (9%)

Query  69   RLHEKYGPIVRI--SPTELH-INDPDYYEVLYSRDS------PRNKYEYYQKTLNAPLAL  119
            +L +KYGPI R+   P  +  ++ P+  + +  +        P   +    +       +
Sbjct  28   KLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVLIKKGEEFSGRPDEPWFATSRGPFLGKGI  87

Query  120  LNTIDHHLHRQLRAQLNPFFSSTRIRRQEPAIKALVNKLCRRLDELKNTGQPLNIEHALT  179
            +   +    RQLR  L P F+S      EP ++     L  +L +       ++I   L 
Sbjct  88   VFA-NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLF  146

Query  180  CYTTDVITDYSMGDGYHYLDAPDFIP--QWHGTLNGTAKT----MVFIRPVAWALPLLLA  233
                +VI     G+ +  L+ P F+   +    L+    +    ++ + P+         
Sbjct  147  RAALNVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKY------  200

Query  234  LPEAVTAWLNPGMELFFDFQRRCRKMIKRIVAAHNEKGNQGVQNE-GFVNIFDDILRSNL  292
                   +  P        +++ + ++ +++    E  +   ++   F++    +L    
Sbjct  201  -------FPGPHGRKLKRARKKIKDLLDKLIEERRETLDSAKKSPRDFLDAL--LLAKEE  251

Query  293  PAKNK-SETRLAQEMQVLVSAGAETTAKAITYILFYLLNDPETMAKLKAELETV---GED  348
               +K ++  L   +  L  AG +TT+  +++ L+ L   PE   KL+ E++ V      
Sbjct  252  EDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRS  311

Query  349  PALVQLEQLPYLTGVMLEGIRLSYGVSARLPRIAPYNALKFRDWTIPPGVPVSMSCLLMH  408
            P    L+ +PYL  V+ E +RL   V   LPR           + IP G  V ++   +H
Sbjct  312  PTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVT-KDTVIPGYLIPKGTLVIVNLYALH  370

Query  409  HNETVFPDSHRFKPERWLDPAERKRLEKYMVAFSKGSRQCIGMHLAKAEILLAVSTLLRR  468
             +  VFP+   F PER+LD   + R     + F  G R C+G  LA+ E+ L ++TLL+ 
Sbjct  371  RDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQN  430

Query  469  MDLELYETT  477
             ++EL   T
Sbjct  431  FEVELPPGT  439



Lambda      K        H        a         alpha
   0.323    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00037292

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  100     2e-26


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 100 bits (252),  Expect = 2e-26, Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (1%)

Query  3    EGIRLSYGVSARLPRIAPYNALKFRDWTIPPGVPVSMSCLLMHHNETVFPDSHRFKPERW  62
            E +RL   V   LPR           + IP G  V ++   +H +  VFP+   F PER+
Sbjct  329  ETLRLHPVVPLLLPREVT-KDTVIPGYLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERF  387

Query  63   LDPAERKRLEKYMVAFSKGSRQCIGMHLAKAEILLAVSTLLRRMDLELYETT  114
            LD   + R     + F  G R C+G  LA+ E+ L ++TLL+  ++EL   T
Sbjct  388  LDENGKFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPGT  439



Lambda      K        H        a         alpha
   0.325    0.140    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00037295

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00037293

Length=66


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.142    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81027614


Query= TCONS_00043000

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.146    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00037297

Length=107
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462515 pfam08547, CIA30, Complex I intermediate-associated pr...  79.6    7e-21


>CDD:462515 pfam08547, CIA30, Complex I intermediate-associated protein 30 
(CIA30).  This protein is associated with mitochondrial Complex 
I intermediate-associated protein 30 (CIA30) in human 
and mouse. The family is also present in Schizosaccharomyces 
pombe which does not contain the NADH dehydrogenase component 
of complex I, or many of the other essential subunits. This 
means it is possible that this family of protein may not 
be directly involved in oxidative phosphorylation.
Length=156

 Score = 79.6 bits (197),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 36/84 (43%), Positives = 46/84 (55%), Gaps = 6/84 (7%)

Query  8   FLFGGDQRWSLTYWTSSDDRVRGGSSYSTLTILPNNTVQFHGHLDITTLGRAGFASQRTT  67
           F F   +  SL  W S +DRV GG S S+L +  + T +F G+L +      GFAS R+ 
Sbjct  1   FDFTSPE--SLDKWRSVNDRVMGGVSTSSLKLSVDGTARFSGNLSLE--NNGGFASVRSR  56

Query  68  -DDISWDLSDADGLELDVAGSDGK  90
             D   DLS  DGLEL V G DG+
Sbjct  57  NFDPPLDLSGYDGLELRVKG-DGR  79



Lambda      K        H        a         alpha
   0.318    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82205656


Query= TCONS_00043001

Length=172
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462515 pfam08547, CIA30, Complex I intermediate-associated pr...  132     1e-40


>CDD:462515 pfam08547, CIA30, Complex I intermediate-associated protein 30 
(CIA30).  This protein is associated with mitochondrial Complex 
I intermediate-associated protein 30 (CIA30) in human 
and mouse. The family is also present in Schizosaccharomyces 
pombe which does not contain the NADH dehydrogenase component 
of complex I, or many of the other essential subunits. This 
means it is possible that this family of protein may not 
be directly involved in oxidative phosphorylation.
Length=156

 Score = 132 bits (335),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 87/168 (52%), Gaps = 20/168 (12%)

Query  8    FLFGGDQRWSLTYWTSSDDRVRGGSSYSTLTILPNNTVQFHGHLDITTLGRAGFASQRTT  67
            F F   +  SL  W S +DRV GG S S+L +  + T +F G+L +      GFAS R+ 
Sbjct  1    FDFTSPE--SLDKWRSVNDRVMGGVSTSSLKLSVDGTARFSGNLSLE--NNGGFASVRSR  56

Query  68   -DDISWDLSDADGLELDVAGSDGKVYTLVVKDRLLPTRADGREQSTISWEYDFQTVERA-  125
              D   DLS  DGLEL V G DG+ Y L ++   L        +   S++ DF T     
Sbjct  57   NFDPPLDLSGYDGLELRVKG-DGRTYKLNLRTESL--------RDGDSYQADFYTTPGEW  107

Query  126  -IVRVRWEDLRASYRGRKV-DAEPLDLRNVKRISIMVRSFFGRQEGDF  171
              V++ + D   ++RGR V DA PLDL  +K+I +++     +QEG F
Sbjct  108  QTVKIPFSDFVPTFRGRVVDDAPPLDLSKIKQIGLLLS---DKQEGPF  152



Lambda      K        H        a         alpha
   0.320    0.136    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 155650586


Query= TCONS_00037294

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462515 pfam08547, CIA30, Complex I intermediate-associated pr...  136     6e-42


>CDD:462515 pfam08547, CIA30, Complex I intermediate-associated protein 30 
(CIA30).  This protein is associated with mitochondrial Complex 
I intermediate-associated protein 30 (CIA30) in human 
and mouse. The family is also present in Schizosaccharomyces 
pombe which does not contain the NADH dehydrogenase component 
of complex I, or many of the other essential subunits. This 
means it is possible that this family of protein may not 
be directly involved in oxidative phosphorylation.
Length=156

 Score = 136 bits (345),  Expect = 6e-42, Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 90/172 (52%), Gaps = 20/172 (12%)

Query  8    FLFGGDQRWSLTYWTSSDDRVRGGSSYSTLTILPNNTVQFHGHLDITTLGRAGFASQRTT  67
            F F   +  SL  W S +DRV GG S S+L +  + T +F G+L +      GFAS R+ 
Sbjct  1    FDFTSPE--SLDKWRSVNDRVMGGVSTSSLKLSVDGTARFSGNLSLE--NNGGFASVRSR  56

Query  68   -DDISWDLSDADGLELDVAGSDGKVYTLVVKDRLLPTRADGREQSTISWEYDFQTVERA-  125
              D   DLS  DGLEL V G DG+ Y L ++   L        +   S++ DF T     
Sbjct  57   NFDPPLDLSGYDGLELRVKG-DGRTYKLNLRTESL--------RDGDSYQADFYTTPGEW  107

Query  126  -IVRVRWEDLRASYRGRKV-DAEPLDLRNVKRISIMVRSFFGRQEGDFLLDV  175
              V++ + D   ++RGR V DA PLDL  +K+I +++     +QEG F L++
Sbjct  108  QTVKIPFSDFVPTFRGRVVDDAPPLDLSKIKQIGLLLS---DKQEGPFELEI  156



Lambda      K        H        a         alpha
   0.321    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00043002

Length=247


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00043003

Length=247


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00043004

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.121    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00037298

Length=249


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.120    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 267630616


Query= TCONS_00043005

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.119    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00043006

Length=247


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00037299

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00037300

Length=247


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.120    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00043007

Length=223


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.121    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00037301

Length=149


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00043008

Length=33


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.148    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00037302

Length=567


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 709853300


Query= TCONS_00043009

Length=442
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / ...  209     8e-65


>CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / NADH oxidase 
family.  
Length=341

 Score = 209 bits (535),  Expect = 8e-65, Method: Composition-based stats.
 Identities = 110/385 (29%), Positives = 163/385 (42%), Gaps = 56/385 (15%)

Query  40   LFRPLQIRNVTLKNRIMVSPMCMYSCESDPSSPHVGALTNYHLAHLGHLALKGAGLVFIE  99
            LF P++I N TLKNRI+++PM       D         T     +    +     L+  E
Sbjct  2    LFEPIKIGNTTLKNRIVMAPMTRLRSLDDG-----TKATGLLAEYYSQRSRGPGTLIITE  56

Query  100  ATAVQPNGRISPNDSGLWQDGTTSEQFLGLKRVVEFMHAQGAKVGIQLAHAGRKASAVAP  159
               V P      N   +W D    EQ  G +++ E +H  G+K G+QL H GR+A     
Sbjct  57   GAFVNPQSGGFDNGPRIWDD----EQIEGWRKLTEAVHKNGSKAGVQLWHLGREA-----  107

Query  160  WLAAQAGKSSLKADESVGGWPADVVGPSGGEEHIFSPEEDAYWVPRALSTAEVRQVVAAF  219
                       + D  V G P+D       E  I SP          +S  E++Q +  F
Sbjct  108  -------PMEYRPDLEVDG-PSDPFALGAQEFEIASPR-------YEMSKEEIKQHIQDF  152

Query  220  AKSARLAVQAGVDVIEIHGAHGYLINEFLSPVTNKRTDAYGGSFENRTRIVREVAAAIRA  279
              +A+ A +AG D +EIHGA+GYLIN+FLSP TN+RTD YGGS ENR R   EV  A++ 
Sbjct  153  VDAAKRAREAGFDGVEIHGANGYLINQFLSPGTNQRTDEYGGSLENRARFPLEVVDAVKE  212

Query  280  VIPEGMPLFLRISATE-WLEGQPVAAESGSWDMQSSLELVKKLPE-WGIDLVDVSSAANH  337
             + +   +  R+S  +    G   A  +    + +  EL  +LP+ W +  +        
Sbjct  213  AVGQERIVGYRLSPFDVVGPGLDFAETAQFIYLLA--ELGVRLPDGWHLAYIHAIEPR--  268

Query  338  KDQKINLHTAYQTDLAGQIRQAIRAAGASTLVGAVGLITDSEQARGLVQGADEATAAEAM  397
                  + T  Q +    ++           +  VG I D               AAE +
Sbjct  269  PRGAGPVRTRQQHNTL-FVKG-----VWKGPLITVGRIDDPSV------------AAEIV  310

Query  398  LSGPEPKADAILIARQFLREPEWVF  422
              G    AD + + R FL +P+  F
Sbjct  311  SKGR---ADLVAMGRPFLADPDLPF  332



Lambda      K        H        a         alpha
   0.316    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 539863808


Query= TCONS_00037303

Length=442
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / ...  209     8e-65


>CDD:395587 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / NADH oxidase 
family.  
Length=341

 Score = 209 bits (535),  Expect = 8e-65, Method: Composition-based stats.
 Identities = 110/385 (29%), Positives = 163/385 (42%), Gaps = 56/385 (15%)

Query  40   LFRPLQIRNVTLKNRIMVSPMCMYSCESDPSSPHVGALTNYHLAHLGHLALKGAGLVFIE  99
            LF P++I N TLKNRI+++PM       D         T     +    +     L+  E
Sbjct  2    LFEPIKIGNTTLKNRIVMAPMTRLRSLDDG-----TKATGLLAEYYSQRSRGPGTLIITE  56

Query  100  ATAVQPNGRISPNDSGLWQDGTTSEQFLGLKRVVEFMHAQGAKVGIQLAHAGRKASAVAP  159
               V P      N   +W D    EQ  G +++ E +H  G+K G+QL H GR+A     
Sbjct  57   GAFVNPQSGGFDNGPRIWDD----EQIEGWRKLTEAVHKNGSKAGVQLWHLGREA-----  107

Query  160  WLAAQAGKSSLKADESVGGWPADVVGPSGGEEHIFSPEEDAYWVPRALSTAEVRQVVAAF  219
                       + D  V G P+D       E  I SP          +S  E++Q +  F
Sbjct  108  -------PMEYRPDLEVDG-PSDPFALGAQEFEIASPR-------YEMSKEEIKQHIQDF  152

Query  220  AKSARLAVQAGVDVIEIHGAHGYLINEFLSPVTNKRTDAYGGSFENRTRIVREVAAAIRA  279
              +A+ A +AG D +EIHGA+GYLIN+FLSP TN+RTD YGGS ENR R   EV  A++ 
Sbjct  153  VDAAKRAREAGFDGVEIHGANGYLINQFLSPGTNQRTDEYGGSLENRARFPLEVVDAVKE  212

Query  280  VIPEGMPLFLRISATE-WLEGQPVAAESGSWDMQSSLELVKKLPE-WGIDLVDVSSAANH  337
             + +   +  R+S  +    G   A  +    + +  EL  +LP+ W +  +        
Sbjct  213  AVGQERIVGYRLSPFDVVGPGLDFAETAQFIYLLA--ELGVRLPDGWHLAYIHAIEPR--  268

Query  338  KDQKINLHTAYQTDLAGQIRQAIRAAGASTLVGAVGLITDSEQARGLVQGADEATAAEAM  397
                  + T  Q +    ++           +  VG I D               AAE +
Sbjct  269  PRGAGPVRTRQQHNTL-FVKG-----VWKGPLITVGRIDDPSV------------AAEIV  310

Query  398  LSGPEPKADAILIARQFLREPEWVF  422
              G    AD + + R FL +P+  F
Sbjct  311  SKGR---ADLVAMGRPFLADPDLPF  332



Lambda      K        H        a         alpha
   0.316    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 539863808


Query= TCONS_00037304

Length=661
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme...  641     0.0  
CDD:426941 pfam02728, Cu_amine_oxidN3, Copper amine oxidase, N3 d...  80.4    7e-19


>CDD:460100 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme domain. 
 Copper amine oxidases are a ubiquitous and novel group of 
quinoenzymes that catalyze the oxidative deamination of primary 
amines to the corresponding aldehydes, with concomitant 
reduction of molecular oxygen to hydrogen peroxide. The enzymes 
are dimers of identical 70-90 kDa subunits, each of which 
contains a single copper ion and a covalently bound cofactor 
formed by the post-translational modification of a tyrosine 
side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). 
This family corresponds to the catalytic domain of the enzyme.
Length=403

 Score = 641 bits (1655),  Expect = 0.0, Method: Composition-based stats.
 Identities = 208/418 (50%), Positives = 262/418 (63%), Gaps = 16/418 (4%)

Query  217  IEITQPEGVSFKMNGNEIEWAGLKMHIGFNYREGIVLSNVRIDDPYENRERKLFHRVSVV  276
              I QPEG SF ++GN +EW G    +GFN REG+VL +VR         R++ +R+S+ 
Sbjct  1    PNIVQPEGPSFTVDGNYVEWQGWSFRVGFNPREGLVLHDVRYKG------RRILYRLSLS  54

Query  277  EMVVPYGCPKPPHHKKHAFDVGEYGSGSMTNSLKLGCDCKGAIQYLDAVLATSTGEATVI  336
            EMVVPYG P PPHH+K AFD GEYG G + NSL LGCDC G I YLDAV A S GE   I
Sbjct  55   EMVVPYGDPDPPHHRKAAFDSGEYGFGRLANSLVLGCDCPGNITYLDAVFADSDGEPVTI  114

Query  337  ENAICIHEEDNGLLYKHTDFRDGNVISARDRKLIISQIITAANYEYAFYHTFTLDGTYKL  396
             NAICIHEED G L+KHTDFR G     R+R+L++  I T  NY+Y F   F  DGT ++
Sbjct  115  PNAICIHEEDAGPLWKHTDFRTGRAEVTRNRRLVVRSIATVGNYDYIFDWIFYQDGTIEV  174

Query  397  EVKLTGMLNTYCLHPSEQAAPFGTEIARGLDAQNHQHIFSLRVDPEIDGPGNTVVQSDAV  456
            EV+ TG+L+T  + P E  +P+GT +A G+   NHQH F+ R+DP+IDG  N+VV+ D V
Sbjct  175  EVRATGILSTAAIDPGEDGSPYGTRVAPGVLGSNHQHFFNFRLDPDIDGTKNSVVEVDVV  234

Query  457  PMADPVGSPANPYGNGFYAKKTPLRTALQGASDYCHETSRGWDIINPSRLNPSTRKPIAY  516
            P       P NPYGN F  ++T L T  + A D      R W I+NP++ N  + KP+ Y
Sbjct  235  PWPVG---PENPYGNAFKVERTVLETEKEAARDLDPSNPRYWKIVNPNKKN-KSGKPVGY  290

Query  517  KILNNN-CPRLLAKPGSTVYKRAGFARHALWVLPYRDHEIFPAGQYVCQSTGEENHPHNP  575
            K++       LLA P S+V KRA FARH LWV  Y+D E++ AG Y  QS G        
Sbjct  291  KLVPGPAHQPLLADPDSSVAKRAAFARHHLWVTKYKDDELYAAGDYNNQSRGPP-----V  345

Query  576  TIVDWAARNESIENTDIVCYIQFGLTHFPRTEDFPIMPAEPVSVMLRASNFFQKNPAL  633
             +  W A NESIEN DIV ++ FGLTH PR EDFP+MP E    +LR  NFF +NPAL
Sbjct  346  GLAKWIADNESIENEDIVLWVTFGLTHIPRPEDFPVMPVEHSGFLLRPFNFFDRNPAL  403


>CDD:426941 pfam02728, Cu_amine_oxidN3, Copper amine oxidase, N3 domain. 
 This domain is the second or third structural domain in copper 
amine oxidases, it is known as the N3 domain. Its function 
is uncertain. The catalytic domain can be found in pfam01179. 
Copper amine oxidases are a ubiquitous and novel group 
of quinoenzymes that catalyze the oxidative deamination of primary 
amines to the corresponding aldehydes, with concomitant 
reduction of molecular oxygen to hydrogen peroxide. The enzymes 
are dimers of identical 70-90 kDa subunits, each of which 
contains a single copper ion and a covalently bound cofactor 
formed by the post-translational modification of a tyrosine 
side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ).
Length=100

 Score = 80.4 bits (199),  Expect = 7e-19, Method: Composition-based stats.
 Identities = 30/104 (29%), Positives = 52/104 (50%), Gaps = 4/104 (4%)

Query  91   PTLTLDDLNIIEHIASKDSRIIEACREIGITDMSRVYYDAWAIGIDERWGFERRLQQALP  150
            P +T ++   IE +   D    E  ++ GI +   VY D W +G        RRL +AL 
Sbjct  1    PPVTAEEYADIEEVIKTDPLFKEQLKKRGIFNGDDVYCDPWTVGPRGEKSGGRRLTKALC  60

Query  151  YYRSSQHDNQYAHPLDFTVVADTETQEILSVDVRRVNGERTPVP  194
            YYR+    N Y HP++  ++ D + ++++ +  ++V   R P P
Sbjct  61   YYRTGG-VNFYLHPIELELLVDHDAKDVIEITDQKV---RYPGP  100



Lambda      K        H        a         alpha
   0.319    0.135    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 837680720


Query= TCONS_00037305

Length=533
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400360 pfam07969, Amidohydro_3, Amidohydrolase family             217     4e-65


>CDD:400360 pfam07969, Amidohydro_3, Amidohydrolase family.  
Length=464

 Score = 217 bits (554),  Expect = 4e-65, Method: Composition-based stats.
 Identities = 148/496 (30%), Positives = 208/496 (42%), Gaps = 49/496 (10%)

Query  50   TIDLNRRIVVPGFIDGHVHILNFGLSLGKLDLMDCTCLEDIQAAIRSFAASHPTAPRLLC  109
             ID   R+V+PGF+D H H+   GL+L +L L D        A ++  A   P    L+ 
Sbjct  2    VIDAKGRLVLPGFVDPHTHLDGGGLNLRELRLPDVLP----NAVVKGQAGRTPKGRWLVG  57

Query  110  RAWIQSTTSGVALASMLDDLD----PRPIHIESLDLHSVWCNSAALEEMGISS-TRDPPG  164
              W ++  +       L DLD      P+ + +L  H+   NSAAL+  GI+  T DPPG
Sbjct  58   EGWDEAQFAETRFPYALADLDEVAPDGPVLLRALHTHAAVANSAALDLAGITKATEDPPG  117

Query  165  GTIHRDETG-RPSGLLSESAVIDIVWPFLASITTQEEKLEALGRAFTAYTQAGYTGLVDM  223
            G I RD  G   +GLL E A        L  +  +E +  A+  A  A    G T +   
Sbjct  118  GEIARDANGEGLTGLLREGAY------ALPPLLAREAEAAAVAAALAALPGFGITSVDGG  171

Query  224  AMDETTWDVLQLYRQRHDPPLHIAAYWLVPFSQNEETNFSHVDRAIQLHAEFHPTKSPNF  283
              +  + D  +  R+     L  A          E     H    +++ A          
Sbjct  172  GGNVHSLDDYEPLRE-----LTAAEKLKELLDAPERLGLPHSIYELRIGA----------  216

Query  284  CIMGIKLICDGVVDGCTAALSQPYGSLTDPVEPIWPAEMLKAVVQRADQAGLQCAIHAIG  343
                +KL  DGV+   TAAL++PY        P +  E L  +V  A + GL  AIHAIG
Sbjct  217  ----MKLFADGVLGSRTAALTEPYFDAPGTGWPDFEDEALAELVAAARERGLDVAIHAIG  272

Query  344  DKAVTQAIDVLAEV----GTPGRRHRIEHLELAAP---EDARRLGELGIIASVQPVHSDP  396
            D  +  A+D    V    G  GR  RIEH +   P       R+  LG  A VQPV    
Sbjct  273  DATIDTALDAFEAVAEKLGNQGRV-RIEHAQGVVPYTYSQIERVAALGGAAGVQPVFDPL  331

Query  397  VLFRAWPELIGERCQRAFAYSEFVDGGARLAMGTDAPTAAHLPLPNLYNATTRRSALEPG  456
                    L  ER +      E ++ G ++A+G+DAP     P P +  A  R++A   G
Sbjct  332  WGDWLQDRLGAERARGLTPVKELLNAGVKVALGSDAPVGPFDPWPRIGAAVMRQTA---G  388

Query  457  EPAATNPRFGLGLAEAVTAATEGAAYARFAEGWTGCLREGRSADFVVLD---MQWEAEEL  513
                  P   L L EA+   T G A A   E   G L  G+ AD VVLD   +  +   +
Sbjct  389  GGEVLGPDEELSLEEALALYTSGPAKALGLEDRKGTLGVGKDADLVVLDDDPLTVDPPAI  448

Query  514  LEGKVCETWFGGKRVY  529
             + +V  T   G+ VY
Sbjct  449  ADIRVRLTVVDGRVVY  464



Lambda      K        H        a         alpha
   0.320    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669217172


Query= TCONS_00037307

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                268     4e-86
CDD:404414 pfam13520, AA_permease_2, Amino acid permease              97.4    1e-22


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 268 bits (687),  Expect = 4e-86, Method: Composition-based stats.
 Identities = 144/359 (40%), Positives = 211/359 (59%), Gaps = 11/359 (3%)

Query  66   VTMIGFCGGIGTGLFVGTGAAYAKAGPAGLLLAYAVVGLVLWCVMQSIAELATLLPTAGS  125
            V MI   G IGTGLFVG+G+   +AGPAG LL Y + G+V++ VM S+ E++T  P +G 
Sbjct  2    VQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGG  61

Query  126  FPHWATRFIDPSVGFSLAISYGYCYTIAIASEVSAAAVIVSYWTDIT----PAVVITVGL  181
            F  +A+RF+ PS+GF+   +Y   +   +A E++AA++++ +W  +       V   V L
Sbjct  62   FYTYASRFLGPSLGFATGWNYWLSWITVLALELTAASILIQFWELVPDIPYLWVWGAVFL  121

Query  182  VLILAINLMNVRFYGETEVLAGSIKILCFIGLVIVSIVITSGGGPNHEAIGFRYWHNPGA  241
            VL+  INL+ V++YGE E     IKI+  IG +IV I++ SGG PN  AI FRY  + G 
Sbjct  122  VLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAI-FRYLGDNGG  180

Query  242  WTNYNGITGSTGHFLGFLSAFVNASFSFIGVETVVITAAESVDPHRAIPKAAQRVTYRIA  301
              N+       G   GF+S FV A F+F G+E V I A E  +P ++IPKA  +V +RI 
Sbjct  181  KNNFPP-----GFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRIT  235

Query  302  FFYILGAFLIGMIVDPRNADLVSGSGNANSSPWVIAIRQAGINALPSIVNACILISAWSA  361
             FYIL    IG++V P N   +     + +SP+VI  +  GI+ L  ++NA IL +A SA
Sbjct  236  IFYILSLLAIGLLV-PWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAALSA  294

Query  362  GNSYCWVGSRMIVAMTTDHQLPQVFGKVTKKGVPYVAVIAAWLFGPLAYLSKSLRLVII  420
             NS  + GSRM+ ++  D   P+   KV K+GVP  A++ + +   LA L  SL   I+
Sbjct  295  ANSSLYSGSRMLYSLARDGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLASLNPAIV  353


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 97.4 bits (243),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 136/356 (38%), Gaps = 30/356 (8%)

Query  65   QVTMIGFCGGIGTGLFVGTGAAYAKAGPAGLLLAYAVVGLVLWCVMQSIAELATLLPTAG  124
                +     IG+G+FV    A    GPA ++  +    +    V    AEL++ LP +G
Sbjct  5    SAFALVIGSVIGSGIFVAPLVASG--GPALIVWGWIAAIIFSLAVGLVYAELSSALPRSG  62

Query  125  SFPHWATRFIDPSVGFSLAISYGYCYTIAIASEVSAAAVIVSYWTDI------TPAVVIT  178
                +        V F    S  + Y + +AS  S AA  +                 I 
Sbjct  63   GIYVYLENAFGKFVAFLAGWSNWFAYVLGLASSASVAASYLLSALGPDLVPTTWLTYGIA  122

Query  179  VGLVLILA-INLMNVRFYGETEVLAGSIKILCFIGLVIVSIVITSGGGPNHEAIGFRYWH  237
            + +++I A IN+  VR   + + + G +K+L  + L+I+  ++T+ GG  +   G  +  
Sbjct  123  IAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFNLLSGEWHTF  182

Query  238  NPGAWTNYNGITGSTGHFLGFLSAFVNASFSFIGVETVVITAAESVDPHRAIPKAAQRVT  297
             P  W              G  + F+   +SF G E+    + E     R +PKA     
Sbjct  183  FPDGWP-------------GVFAGFLGVLWSFTGFESAANVSEE--VKKRNVPKAIFIGV  227

Query  298  YRIAFFYILGAFLIGMIVDPRNADLVSGSGNANSSPWVIAIRQAGINALPSIVNACILIS  357
              +   YIL       +V      L SG G        +  +  G      IV   + +S
Sbjct  228  IIVGVLYILVNIAFFGVVPDDEIALSSGLG----QVAALLFQAVGGKWGAIIVVILLALS  283

Query  358  AWSAGNSYCWVGSRMIVAMTTDHQLP--QVFGKVTKKGVPYVAVIAAWLFGPLAYL  411
               A N+     SR++ A+  D  LP  + F KV K G P  A+I   +   +  L
Sbjct  284  LLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKFGSPIRAIILTAILSLILLL  339



Lambda      K        H        a         alpha
   0.323    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00037306

Length=560
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                325     3e-106
CDD:404414 pfam13520, AA_permease_2, Amino acid permease              106     2e-25 


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 325 bits (835),  Expect = 3e-106, Method: Composition-based stats.
 Identities = 177/470 (38%), Positives = 262/470 (56%), Gaps = 21/470 (4%)

Query  66   VTMIGFCGGIGTGLFVGTGAAYAKAGPAGLLLAYAVVGLVLWCVMQSIAELATLLPTAGS  125
            V MI   G IGTGLFVG+G+   +AGPAG LL Y + G+V++ VM S+ E++T  P +G 
Sbjct  2    VQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGG  61

Query  126  FPHWATRFIDPSVGFSLAISYGYCYTIAIASEVSAAAVIVSYWTDIT----PAVVITVGL  181
            F  +A+RF+ PS+GF+   +Y   +   +A E++AA++++ +W  +       V   V L
Sbjct  62   FYTYASRFLGPSLGFATGWNYWLSWITVLALELTAASILIQFWELVPDIPYLWVWGAVFL  121

Query  182  VLILAINLMNVRFYGETEVLAGSIKILCFIGLVIVSIVITSGGGPNHEAIGFRYWHNPGA  241
            VL+  INL+ V++YGE E     IKI+  IG +IV I++ SGG PN  AI FRY  + G 
Sbjct  122  VLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAI-FRYLGDNGG  180

Query  242  WTNYNGITGSTGHFLGFLSAFVNASFSFIGVETVVITAAESVDPHRAIPKAAQRVTYRIA  301
              N+       G   GF+S FV A F+F G+E V I A E  +P ++IPKA  +V +RI 
Sbjct  181  KNNFPP-----GFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRIT  235

Query  302  FFYILGAFLIGMIVDPRNADLVSGSGNANSSPWVIAIRQAGINALPSIVNACILISAWSA  361
             FYIL    IG++V P N   +     + +SP+VI  +  GI+ L  ++NA IL +A SA
Sbjct  236  IFYILSLLAIGLLV-PWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAALSA  294

Query  362  GNSYCWVGSRMIVAMTTDHQLPQVFGKVTKKGVPYVAVIAAWGSG-----LGSGGAAQAF  416
             NS  + GSRM+ ++  D   P+   KV K+GVP  A++ +         L S   A  F
Sbjct  295  ANSSLYSGSRMLYSLARDGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLASLNPAIVF  354

Query  417  SWLLNLSTVAGLIAWATLSFCYIRFYAALKAQGIHRDTLPWKGPLQPYAAWVGFIGSTII  476
            ++LL +S ++GLI W  +S  ++RF  A K QG   D LP+K PL P    +G     II
Sbjct  355  NFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIII  414

Query  477  TLVAGFPVFLK-----GNWNTSDFVASYIGIPIFIVPIIGWKFWHRTKVR  521
             ++     FL       NW    F A+Y+ + +F++ +IG K   +    
Sbjct  415  LIIQFLYAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILIGVKLHVKNWKP  464


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 106 bits (267),  Expect = 2e-25, Method: Composition-based stats.
 Identities = 99/455 (22%), Positives = 163/455 (36%), Gaps = 45/455 (10%)

Query  65   QVTMIGFCGGIGTGLFVGTGAAYAKAGPAGLLLAYAVVGLVLWCVMQSIAELATLLPTAG  124
                +     IG+G+FV    A    GPA ++  +    +    V    AEL++ LP +G
Sbjct  5    SAFALVIGSVIGSGIFVAPLVASG--GPALIVWGWIAAIIFSLAVGLVYAELSSALPRSG  62

Query  125  SFPHWATRFIDPSVGFSLAISYGYCYTIAIASEVSAAAVIVSYWTDI------TPAVVIT  178
                +        V F    S  + Y + +AS  S AA  +                 I 
Sbjct  63   GIYVYLENAFGKFVAFLAGWSNWFAYVLGLASSASVAASYLLSALGPDLVPTTWLTYGIA  122

Query  179  VGLVLILA-INLMNVRFYGETEVLAGSIKILCFIGLVIVSIVITSGGGPNHEAIGFRYWH  237
            + +++I A IN+  VR   + + + G +K+L  + L+I+  ++T+ GG  +   G  +  
Sbjct  123  IAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFNLLSGEWHTF  182

Query  238  NPGAWTNYNGITGSTGHFLGFLSAFVNASFSFIGVETVVITAAESVDPHRAIPKAAQRVT  297
             P  W              G  + F+   +SF G E+    + E     R +PKA     
Sbjct  183  FPDGWP-------------GVFAGFLGVLWSFTGFESAANVSEE--VKKRNVPKAIFIGV  227

Query  298  YRIAFFYILGAFLIGMIVDPRNADLVSGSGNANSSPWVIAIRQAGINALPSIVNACILIS  357
              +   YIL       +V      L SG G        +  +  G      IV   + +S
Sbjct  228  IIVGVLYILVNIAFFGVVPDDEIALSSGLG----QVAALLFQAVGGKWGAIIVVILLALS  283

Query  358  AWSAGNSYCWVGSRMIVAMTTDHQLP--QVFGKVTKKGVPYVAVIAAWG----SGLGSGG  411
               A N+     SR++ A+  D  LP  + F KV K G P  A+I          L    
Sbjct  284  LLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKFGSPIRAIILTAILSLILLLLFLL  343

Query  412  AAQAFSWLLNLSTVAGLIAWATLSFCYIRFYAALKAQGIHRDTLPWKGPLQPYAAWVGFI  471
            +  A++ LL+LS    L+++       +          I R   P  G + P    V   
Sbjct  344  SPAAYNALLSLSAYGYLLSYLLPIIGLL----------ILRKKRPDLGRI-PGRWPVAIF  392

Query  472  GSTIITLVAGFPVFLKGNWNTSDFVASYIGIPIFI  506
            G      +     F      T   +   I + +  
Sbjct  393  GILFSLFLIVALFFPPVGPATGSSLNYAIILIVAF  427



Lambda      K        H        a         alpha
   0.324    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 699392304


Query= TCONS_00037308

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:366028 pfam00324, AA_permease, Amino acid permease                268     4e-86
CDD:404414 pfam13520, AA_permease_2, Amino acid permease              97.4    1e-22


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 268 bits (687),  Expect = 4e-86, Method: Composition-based stats.
 Identities = 144/359 (40%), Positives = 211/359 (59%), Gaps = 11/359 (3%)

Query  66   VTMIGFCGGIGTGLFVGTGAAYAKAGPAGLLLAYAVVGLVLWCVMQSIAELATLLPTAGS  125
            V MI   G IGTGLFVG+G+   +AGPAG LL Y + G+V++ VM S+ E++T  P +G 
Sbjct  2    VQMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGG  61

Query  126  FPHWATRFIDPSVGFSLAISYGYCYTIAIASEVSAAAVIVSYWTDIT----PAVVITVGL  181
            F  +A+RF+ PS+GF+   +Y   +   +A E++AA++++ +W  +       V   V L
Sbjct  62   FYTYASRFLGPSLGFATGWNYWLSWITVLALELTAASILIQFWELVPDIPYLWVWGAVFL  121

Query  182  VLILAINLMNVRFYGETEVLAGSIKILCFIGLVIVSIVITSGGGPNHEAIGFRYWHNPGA  241
            VL+  INL+ V++YGE E     IKI+  IG +IV I++ SGG PN  AI FRY  + G 
Sbjct  122  VLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGAI-FRYLGDNGG  180

Query  242  WTNYNGITGSTGHFLGFLSAFVNASFSFIGVETVVITAAESVDPHRAIPKAAQRVTYRIA  301
              N+       G   GF+S FV A F+F G+E V I A E  +P ++IPKA  +V +RI 
Sbjct  181  KNNFPP-----GFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRIT  235

Query  302  FFYILGAFLIGMIVDPRNADLVSGSGNANSSPWVIAIRQAGINALPSIVNACILISAWSA  361
             FYIL    IG++V P N   +     + +SP+VI  +  GI+ L  ++NA IL +A SA
Sbjct  236  IFYILSLLAIGLLV-PWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAALSA  294

Query  362  GNSYCWVGSRMIVAMTTDHQLPQVFGKVTKKGVPYVAVIAAWLFGPLAYLSKSLRLVII  420
             NS  + GSRM+ ++  D   P+   KV K+GVP  A++ + +   LA L  SL   I+
Sbjct  295  ANSSLYSGSRMLYSLARDGLAPKFLKKVDKRGVPLRAILVSMVISLLALLLASLNPAIV  353


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 97.4 bits (243),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 136/356 (38%), Gaps = 30/356 (8%)

Query  65   QVTMIGFCGGIGTGLFVGTGAAYAKAGPAGLLLAYAVVGLVLWCVMQSIAELATLLPTAG  124
                +     IG+G+FV    A    GPA ++  +    +    V    AEL++ LP +G
Sbjct  5    SAFALVIGSVIGSGIFVAPLVASG--GPALIVWGWIAAIIFSLAVGLVYAELSSALPRSG  62

Query  125  SFPHWATRFIDPSVGFSLAISYGYCYTIAIASEVSAAAVIVSYWTDI------TPAVVIT  178
                +        V F    S  + Y + +AS  S AA  +                 I 
Sbjct  63   GIYVYLENAFGKFVAFLAGWSNWFAYVLGLASSASVAASYLLSALGPDLVPTTWLTYGIA  122

Query  179  VGLVLILA-INLMNVRFYGETEVLAGSIKILCFIGLVIVSIVITSGGGPNHEAIGFRYWH  237
            + +++I A IN+  VR   + + + G +K+L  + L+I+  ++T+ GG  +   G  +  
Sbjct  123  IAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGGGFNLLSGEWHTF  182

Query  238  NPGAWTNYNGITGSTGHFLGFLSAFVNASFSFIGVETVVITAAESVDPHRAIPKAAQRVT  297
             P  W              G  + F+   +SF G E+    + E     R +PKA     
Sbjct  183  FPDGWP-------------GVFAGFLGVLWSFTGFESAANVSEE--VKKRNVPKAIFIGV  227

Query  298  YRIAFFYILGAFLIGMIVDPRNADLVSGSGNANSSPWVIAIRQAGINALPSIVNACILIS  357
              +   YIL       +V      L SG G        +  +  G      IV   + +S
Sbjct  228  IIVGVLYILVNIAFFGVVPDDEIALSSGLG----QVAALLFQAVGGKWGAIIVVILLALS  283

Query  358  AWSAGNSYCWVGSRMIVAMTTDHQLP--QVFGKVTKKGVPYVAVIAAWLFGPLAYL  411
               A N+     SR++ A+  D  LP  + F KV K G P  A+I   +   +  L
Sbjct  284  LLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKFGSPIRAIILTAILSLILLL  339



Lambda      K        H        a         alpha
   0.323    0.138    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0831    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00037309

Length=160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  57.2    3e-11


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 57.2 bits (139),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 49/115 (43%), Gaps = 21/115 (18%)

Query  7    WAKTWDVNVTGTHLLTSALMPLLLKSPDPRLLFVTSGAARLAGTDDLRLPINRSPPAGWP  66
            W +  DVN+TG   LT A++P ++K    R++ ++S A  +             P  G  
Sbjct  101  WERVIDVNLTGVFNLTRAVLPAMIKGSGGRIVNISSVAGLV-------------PYPGGS  147

Query  67   EPAGITATAYRSSKTGLSMFLREWGRMLRNDGVKIWGIAPGYLATGLGGGTAEEM  121
                    AY +SK  +  F R     L   G+++  +APG + T +     E+ 
Sbjct  148  --------AYSASKAAVIGFTRSLALELAPHGIRVNAVAPGGVDTDMTKELREDE  194



Lambda      K        H        a         alpha
   0.317    0.135    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 138406720


Query= TCONS_00043011

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            92.9    8e-22


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 92.9 bits (231),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 59/211 (28%), Positives = 96/211 (45%), Gaps = 5/211 (2%)

Query  62   IMMTMFLVALDRTIISTAIPQ-ITNEFD-SLSDVGWYGSAYLLTCCAFQLLFGKIYTFYP  119
            + +  FL AL R+++  A+P  +  +   S +++G   + + L     Q L G++   + 
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  120  VKAVMLSSILLFEVGSAVCGAAPNSTAFIVGRALAGIAAAGIFAGSVVCIVYAVPLEKRP  179
             + V+L  +LLF +G  +   A +    +V R L G+ A  +F  ++  I    P E+R 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  180  KIQGLFGAVFGLASIVGPLVGGAFTSHVTWRWCFYINLPCGGLAMAAIPFCLKVPDRNT-  238
            +  GL  A FGL + +GPL+GG   S   WR  F I        +AA+   L  P   + 
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLILAI--LSLLAAVLLLLPRPPPESK  178

Query  239  TKVTWTEKLKQLDVPGMCCLVPGVVCLVLAL  269
                  E    L V     L   V+ L+LAL
Sbjct  179  RPKPAEEARLSLIVAWKALLRDPVLWLLLAL  209



Lambda      K        H        a         alpha
   0.324    0.138    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 410547780


Query= TCONS_00037310

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            115     5e-29


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 115 bits (291),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 80/404 (20%), Positives = 147/404 (36%), Gaps = 63/404 (16%)

Query  62   IMMTMFLVALDRTIISTAIPQ-ITNEFD-SLSDVGWYGSAYLLTCCAFQLLFGKIYTFYP  119
            + +  FL AL R+++  A+P  +  +   S +++G   + + L     Q L G++   + 
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  120  VKAVMLSSILLFEVGSAVCGAAPNSTAFIVGRALAGIAAAGIFAGSVVCIVYAVPLEKRP  179
             + V+L  +LLF +G  +   A +    +V R L G+ A  +F  ++  I    P E+R 
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  180  KIQGLFGAVFGLASIVGPLVGGAFTSHVTWRWCFYINLPCGGLAMAAIPFCLKVPDRNTT  239
            +  GL  A FGL + +GPL+GG   S   WR  F I                        
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLLASLFGWRAAFLIL-----------------------  157

Query  240  KVTWTEKLKQLDVPGMCCLVPGVVCLVLALQWGGQKYDWNNSRIIVLLTLMGVLLLGFVA  299
                               +  ++  VL L                              
Sbjct  158  ------------------AILSLLAAVLLLLPRPPPESKRPKP-----------------  182

Query  300  VQILLTRTATIPLRIFSRRSIFAGVWATICIGASQYVFIYFLPIWFQSIKGVSAVDSGLR  359
                   +  +  +   R  +   + A +  G + +  + +LP+ +Q + G+SA+ +GL 
Sbjct  183  -AEEARLSLIVAWKALLRDPVLWLLLALLLFGFAFFGLLTYLPL-YQEVLGLSALLAGLL  240

Query  360  LLPLMLSMVAASILSGVTTQKVGYYTPLAIIGSCIMAIGAGLLTTLQIHTGHGKWIGYQI  419
            L    L      +L G  + ++G    L +    ++    GLL      +     +   +
Sbjct  241  LGLGGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLAL-L  299

Query  420  LYGFGMGMCFQQPNLAAQTVLPTKDVPVGIAVMFFSQLLGAAAF  463
            L GFG G+ F   N     + P ++      +   +  LG A  
Sbjct  300  LLGFGFGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG  343



Lambda      K        H        a         alpha
   0.324    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 705370016


Query= TCONS_00037311

Length=341


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 397963940


Query= TCONS_00037312

Length=201


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00037314

Length=375


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00037313

Length=375


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00043012

Length=713


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00043013

Length=461


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 569004184


Query= TCONS_00037315

Length=375


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 451445260


Query= TCONS_00037316

Length=689


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 878974840


Query= TCONS_00037317

Length=637
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          173     2e-50


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 173 bits (441),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 4/236 (2%)

Query  336  LLDPVHYIQSLPSKNMRTKLVDALNLWFQLP--HHLVDTVKGTVDDLHNSTLILDDIQDS  393
            L +P+ Y+ S   K +R  LV         P        +   V+ LH ++L+ DDI D+
Sbjct  4    LYEPLDYLVSAGGKRIRPLLVLLSAEALGGPEDLEKAIVLAWAVELLHAASLVHDDIMDN  63

Query  394  SYLRRGFAATHHVFGSAQCINSATYLLVQAASRLSVHNEQYPAVITVFLDGLKELALGQS  453
            S LRRG    H +FG+A  IN   YL   A  +L       P ++ +F +   + A GQ 
Sbjct  64   SDLRRGQPTWHRIFGNAIAINDGDYLYALA-FQLLAKLFPNPELLELFSEVTLQTAEGQG  122

Query  454  WDLNWRSTGYCPSTEE-YMAMVDGKTGVMFDMIVRMMHCFSSSQTVPVSELSQLTQLLGR  512
             DL WR+      TEE Y+ +V  KT  +F + V++    S +    +  L      LG 
Sbjct  123  LDLLWRNDDDLSCTEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLGL  182

Query  513  WYQVRDDYQNLQDAQYTAQKGFCEDLDEGKLSYPLTVCCNADPTAQRIIMGILRQR  568
             +Q++DDY +L        K    D+ EGK ++P+       P  ++I++ I  +R
Sbjct  183  AFQIQDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALERTPEQRKILLEIYGKR  238



Lambda      K        H        a         alpha
   0.320    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 802285760


Query= TCONS_00037318

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          167     2e-49


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 167 bits (425),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 100/215 (47%), Gaps = 4/215 (2%)

Query  208  LLDPVHYIQSLPSKNMRTKLVDALNLWFQLP--HHLVDTVKGTVDDLHNSTLILDDIQDS  265
            L +P+ Y+ S   K +R  LV         P        +   V+ LH ++L+ DDI D+
Sbjct  4    LYEPLDYLVSAGGKRIRPLLVLLSAEALGGPEDLEKAIVLAWAVELLHAASLVHDDIMDN  63

Query  266  SYLRRGFAATHHVFGSAQCINSATYLLVQAASRLSVHNEQYPAVITVFLDGLKELALGQS  325
            S LRRG    H +FG+A  IN   YL   A  +L       P ++ +F +   + A GQ 
Sbjct  64   SDLRRGQPTWHRIFGNAIAINDGDYLYALA-FQLLAKLFPNPELLELFSEVTLQTAEGQG  122

Query  326  WDLNWRSTGYCPSTEE-YMAMVDGKTGVMFDMIVRMMHCFSSSQTVPVSELSQLTQLLGR  384
             DL WR+      TEE Y+ +V  KT  +F + V++    S +    +  L      LG 
Sbjct  123  LDLLWRNDDDLSCTEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLGL  182

Query  385  WYQVRDDYQNLQDAQYTAQKGFCEDLDEGKLSYPL  419
             +Q++DDY +L        K    D+ EGK ++P+
Sbjct  183  AFQIQDDYLDLFGDPEVLGKPAGTDITEGKCTWPV  217



Lambda      K        H        a         alpha
   0.319    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00043015

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          171     1e-51


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 171 bits (437),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 4/236 (2%)

Query  108  LLDPVHYIQSLPSKNMRTKLVDALNLWFQLP--HHLVDTVKGTVDDLHNSTLILDDIQDS  165
            L +P+ Y+ S   K +R  LV         P        +   V+ LH ++L+ DDI D+
Sbjct  4    LYEPLDYLVSAGGKRIRPLLVLLSAEALGGPEDLEKAIVLAWAVELLHAASLVHDDIMDN  63

Query  166  SYLRRGFAATHHVFGSAQCINSATYLLVQAASRLSVHNEQYPAVITVFLDGLKELALGQS  225
            S LRRG    H +FG+A  IN   YL   A  +L       P ++ +F +   + A GQ 
Sbjct  64   SDLRRGQPTWHRIFGNAIAINDGDYLYALA-FQLLAKLFPNPELLELFSEVTLQTAEGQG  122

Query  226  WDLNWRSTGYCPSTEE-YMAMVDGKTGVMFDMIVRMMHCFSSSQTVPVSELSQLTQLLGR  284
             DL WR+      TEE Y+ +V  KT  +F + V++    S +    +  L      LG 
Sbjct  123  LDLLWRNDDDLSCTEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLGL  182

Query  285  WYQVRDDYQNLQDAQYTAQKGFCEDLDEGKLSYPLTVCCNADPTAQRIIMGILRQR  340
             +Q++DDY +L        K    D+ EGK ++P+       P  ++I++ I  +R
Sbjct  183  AFQIQDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALERTPEQRKILLEIYGKR  238



Lambda      K        H        a         alpha
   0.321    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 497069440


Query= TCONS_00037321

Length=509
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          173     2e-51


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 173 bits (442),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 4/236 (2%)

Query  208  LLDPVHYIQSLPSKNMRTKLVDALNLWFQLP--HHLVDTVKGTVDDLHNSTLILDDIQDS  265
            L +P+ Y+ S   K +R  LV         P        +   V+ LH ++L+ DDI D+
Sbjct  4    LYEPLDYLVSAGGKRIRPLLVLLSAEALGGPEDLEKAIVLAWAVELLHAASLVHDDIMDN  63

Query  266  SYLRRGFAATHHVFGSAQCINSATYLLVQAASRLSVHNEQYPAVITVFLDGLKELALGQS  325
            S LRRG    H +FG+A  IN   YL   A  +L       P ++ +F +   + A GQ 
Sbjct  64   SDLRRGQPTWHRIFGNAIAINDGDYLYALA-FQLLAKLFPNPELLELFSEVTLQTAEGQG  122

Query  326  WDLNWRSTGYCPSTEE-YMAMVDGKTGVMFDMIVRMMHCFSSSQTVPVSELSQLTQLLGR  384
             DL WR+      TEE Y+ +V  KT  +F + V++    S +    +  L      LG 
Sbjct  123  LDLLWRNDDDLSCTEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLGL  182

Query  385  WYQVRDDYQNLQDAQYTAQKGFCEDLDEGKLSYPLTVCCNADPTAQRIIMGILRQR  440
             +Q++DDY +L        K    D+ EGK ++P+       P  ++I++ I  +R
Sbjct  183  AFQIQDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALERTPEQRKILLEIYGKR  238



Lambda      K        H        a         alpha
   0.320    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 632879588


Query= TCONS_00037323

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          164     1e-49


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 164 bits (419),  Expect = 1e-49, Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 100/215 (47%), Gaps = 4/215 (2%)

Query  108  LLDPVHYIQSLPSKNMRTKLVDALNLWFQLP--HHLVDTVKGTVDDLHNSTLILDDIQDS  165
            L +P+ Y+ S   K +R  LV         P        +   V+ LH ++L+ DDI D+
Sbjct  4    LYEPLDYLVSAGGKRIRPLLVLLSAEALGGPEDLEKAIVLAWAVELLHAASLVHDDIMDN  63

Query  166  SYLRRGFAATHHVFGSAQCINSATYLLVQAASRLSVHNEQYPAVITVFLDGLKELALGQS  225
            S LRRG    H +FG+A  IN   YL   A  +L       P ++ +F +   + A GQ 
Sbjct  64   SDLRRGQPTWHRIFGNAIAINDGDYLYALA-FQLLAKLFPNPELLELFSEVTLQTAEGQG  122

Query  226  WDLNWRSTGYCPSTEE-YMAMVDGKTGVMFDMIVRMMHCFSSSQTVPVSELSQLTQLLGR  284
             DL WR+      TEE Y+ +V  KT  +F + V++    S +    +  L      LG 
Sbjct  123  LDLLWRNDDDLSCTEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLGL  182

Query  285  WYQVRDDYQNLQDAQYTAQKGFCEDLDEGKLSYPL  319
             +Q++DDY +L        K    D+ EGK ++P+
Sbjct  183  AFQIQDDYLDLFGDPEVLGKPAGTDITEGKCTWPV  217



Lambda      K        H        a         alpha
   0.320    0.133    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 415266720


Query= TCONS_00043016

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          171     1e-51


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 171 bits (437),  Expect = 1e-51, Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 4/236 (2%)

Query  108  LLDPVHYIQSLPSKNMRTKLVDALNLWFQLP--HHLVDTVKGTVDDLHNSTLILDDIQDS  165
            L +P+ Y+ S   K +R  LV         P        +   V+ LH ++L+ DDI D+
Sbjct  4    LYEPLDYLVSAGGKRIRPLLVLLSAEALGGPEDLEKAIVLAWAVELLHAASLVHDDIMDN  63

Query  166  SYLRRGFAATHHVFGSAQCINSATYLLVQAASRLSVHNEQYPAVITVFLDGLKELALGQS  225
            S LRRG    H +FG+A  IN   YL   A  +L       P ++ +F +   + A GQ 
Sbjct  64   SDLRRGQPTWHRIFGNAIAINDGDYLYALA-FQLLAKLFPNPELLELFSEVTLQTAEGQG  122

Query  226  WDLNWRSTGYCPSTEE-YMAMVDGKTGVMFDMIVRMMHCFSSSQTVPVSELSQLTQLLGR  284
             DL WR+      TEE Y+ +V  KT  +F + V++    S +    +  L      LG 
Sbjct  123  LDLLWRNDDDLSCTEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLGL  182

Query  285  WYQVRDDYQNLQDAQYTAQKGFCEDLDEGKLSYPLTVCCNADPTAQRIIMGILRQR  340
             +Q++DDY +L        K    D+ EGK ++P+       P  ++I++ I  +R
Sbjct  183  AFQIQDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALERTPEQRKILLEIYGKR  238



Lambda      K        H        a         alpha
   0.321    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 497069440


Query= TCONS_00037319

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          173     9e-51


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 173 bits (440),  Expect = 9e-51, Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 4/236 (2%)

Query  249  LLDPVHYIQSLPSKNMRTKLVDALNLWFQLP--HHLVDTVKGTVDDLHNSTLILDDIQDS  306
            L +P+ Y+ S   K +R  LV         P        +   V+ LH ++L+ DDI D+
Sbjct  4    LYEPLDYLVSAGGKRIRPLLVLLSAEALGGPEDLEKAIVLAWAVELLHAASLVHDDIMDN  63

Query  307  SYLRRGFAATHHVFGSAQCINSATYLLVQAASRLSVHNEQYPAVITVFLDGLKELALGQS  366
            S LRRG    H +FG+A  IN   YL   A  +L       P ++ +F +   + A GQ 
Sbjct  64   SDLRRGQPTWHRIFGNAIAINDGDYLYALA-FQLLAKLFPNPELLELFSEVTLQTAEGQG  122

Query  367  WDLNWRSTGYCPSTEE-YMAMVDGKTGVMFDMIVRMMHCFSSSQTVPVSELSQLTQLLGR  425
             DL WR+      TEE Y+ +V  KT  +F + V++    S +    +  L      LG 
Sbjct  123  LDLLWRNDDDLSCTEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLGL  182

Query  426  WYQVRDDYQNLQDAQYTAQKGFCEDLDEGKLSYPLTVCCNADPTAQRIIMGILRQR  481
             +Q++DDY +L        K    D+ EGK ++P+       P  ++I++ I  +R
Sbjct  183  AFQIQDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALERTPEQRKILLEIYGKR  238



Lambda      K        H        a         alpha
   0.321    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684448024


Query= TCONS_00037320

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          166     9e-49


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 166 bits (422),  Expect = 9e-49, Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 100/215 (47%), Gaps = 4/215 (2%)

Query  234  LLDPVHYIQSLPSKNMRTKLVDALNLWFQLP--HHLVDTVKGTVDDLHNSTLILDDIQDS  291
            L +P+ Y+ S   K +R  LV         P        +   V+ LH ++L+ DDI D+
Sbjct  4    LYEPLDYLVSAGGKRIRPLLVLLSAEALGGPEDLEKAIVLAWAVELLHAASLVHDDIMDN  63

Query  292  SYLRRGFAATHHVFGSAQCINSATYLLVQAASRLSVHNEQYPAVITVFLDGLKELALGQS  351
            S LRRG    H +FG+A  IN   YL   A  +L       P ++ +F +   + A GQ 
Sbjct  64   SDLRRGQPTWHRIFGNAIAINDGDYLYALA-FQLLAKLFPNPELLELFSEVTLQTAEGQG  122

Query  352  WDLNWRSTGYCPSTEE-YMAMVDGKTGVMFDMIVRMMHCFSSSQTVPVSELSQLTQLLGR  410
             DL WR+      TEE Y+ +V  KT  +F + V++    S +    +  L      LG 
Sbjct  123  LDLLWRNDDDLSCTEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLGL  182

Query  411  WYQVRDDYQNLQDAQYTAQKGFCEDLDEGKLSYPL  445
             +Q++DDY +L        K    D+ EGK ++P+
Sbjct  183  AFQIQDDYLDLFGDPEVLGKPAGTDITEGKCTWPV  217



Lambda      K        H        a         alpha
   0.319    0.132    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595077152


Query= TCONS_00037322

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          165     2e-48


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 165 bits (421),  Expect = 2e-48, Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 100/215 (47%), Gaps = 4/215 (2%)

Query  249  LLDPVHYIQSLPSKNMRTKLVDALNLWFQLP--HHLVDTVKGTVDDLHNSTLILDDIQDS  306
            L +P+ Y+ S   K +R  LV         P        +   V+ LH ++L+ DDI D+
Sbjct  4    LYEPLDYLVSAGGKRIRPLLVLLSAEALGGPEDLEKAIVLAWAVELLHAASLVHDDIMDN  63

Query  307  SYLRRGFAATHHVFGSAQCINSATYLLVQAASRLSVHNEQYPAVITVFLDGLKELALGQS  366
            S LRRG    H +FG+A  IN   YL   A  +L       P ++ +F +   + A GQ 
Sbjct  64   SDLRRGQPTWHRIFGNAIAINDGDYLYALA-FQLLAKLFPNPELLELFSEVTLQTAEGQG  122

Query  367  WDLNWRSTGYCPSTEE-YMAMVDGKTGVMFDMIVRMMHCFSSSQTVPVSELSQLTQLLGR  425
             DL WR+      TEE Y+ +V  KT  +F + V++    S +    +  L      LG 
Sbjct  123  LDLLWRNDDDLSCTEEEYLEIVKYKTAYLFALAVKLGAILSGADDEVIEALKDYGLNLGL  182

Query  426  WYQVRDDYQNLQDAQYTAQKGFCEDLDEGKLSYPL  460
             +Q++DDY +L        K    D+ EGK ++P+
Sbjct  183  AFQIQDDYLDLFGDPEVLGKPAGTDITEGKCTWPV  217



Lambda      K        H        a         alpha
   0.320    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00037324

Length=486


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 598056070


Query= TCONS_00037325

Length=282


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.126    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 316002176


Query= TCONS_00037327

Length=301


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.148    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0900    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00037328

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            109     5e-27


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 109 bits (275),  Expect = 5e-27, Method: Composition-based stats.
 Identities = 78/366 (21%), Positives = 130/366 (36%), Gaps = 47/366 (13%)

Query  138  LAFTSICSTFDSAVFSSSTGN-VARVFGVGVEVATLSSSLYILGYACGPLIWAPFSELQG  196
            L   +  +    ++   +    +A   G+      L  +L+ LGYA    +    S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  197  RRLPILIGMLGFGIFNIAVAVAKDLQTLLICRFFCGVFGSCPLAVVAAIFSDIFDNRSRG  256
            RR  +LIG+L F +  + +  A  L  LL+ R   G+          A+ +D F    RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  257  IAIAMFSSMVFLGPLIAPFIGGFINMSSLGWRWTAYLPAIMGFAALILNFFFLKESYPPV  316
             A+ + S+   LG  + P +GG +  S  GWR    + AI+   A +L            
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLL-ASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKR  179

Query  317  ILIYKAAELRRRTKNWGIHAKQEEIEIDLQELLVNNFSRPLRLLVHEPLILAVTLYLSFI  376
                + A L                                + L+ +P++    L    +
Sbjct  180  PKPAEEARLSLIV--------------------------AWKALLRDPVLWL--LLALLL  211

Query  377  YGLLYCFLTAYGLVYQGVYHMNAGVGGLPLFGMVVGLFIGGAYICLFASRAYNQKLQANA  436
            +G  +  L  Y  +YQ V  ++A + GL L G+   L   G  +    S           
Sbjct  212  FGFAFFGLLTYLPLYQEVLGLSALLAGL-LLGLGGLLGAIGRLLLGRLSDRLG-------  263

Query  437  GVPVPEWRLPPVIVGGALFAAGIFWFGWTGFTADVPWIASTLSGLFTGFGLLIVFIQLFN  496
                   RL   ++   L A G+     T     +  +   L+ L  GFG  +VF  L  
Sbjct  264  ----RRRRLLLALLLLILAALGLLLLSLT-----LSSLWLLLALLLLGFGFGLVFPALNA  314

Query  497  YLIDTY  502
             + D  
Sbjct  315  LVSDLA  320



Lambda      K        H        a         alpha
   0.326    0.141    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 626823324


Query= TCONS_00037329

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            71.3    3e-14


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 71.3 bits (175),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 66/322 (20%), Positives = 108/322 (34%), Gaps = 47/322 (15%)

Query  1    MLGFGIFNIAVAVAKDLQTLLICRFFCGVFGSCPLAVVAAIFSDIFDNRSRGIAIAMFSS  60
            +L F +  + +  A  L  LL+ R   G+          A+ +D F    RG A+ + S+
Sbjct  69   LLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERGRALGLVSA  128

Query  61   MVFLGPLIAPFIGGFINMSSLGWRWTAYLPAIMGFAALILNFFFLKESYPPVILIYKAAE  120
               LG  + P +GG +  S  GWR    + AI+   A +L                + A 
Sbjct  129  GFGLGAALGPLLGGLL-ASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKRPKPAEEAR  187

Query  121  LRRRTKNWGIHAKQEEIEIDLQELLVNNFSRPLRLLVHEPLILAVTLYLSFIYGLLYCFL  180
            L                                + L+ +P++    L    ++G  +  L
Sbjct  188  LSLIV--------------------------AWKALLRDPVLWL--LLALLLFGFAFFGL  219

Query  181  TAYGLVYQGVYHMNAGVGGLPLFGMVVGLFIGGAYICLFASRAYNQKLQANAGVPVPEWR  240
              Y  +YQ V  ++A + GL L G+   L   G  +    S                  R
Sbjct  220  LTYLPLYQEVLGLSALLAGL-LLGLGGLLGAIGRLLLGRLSDRLG-----------RRRR  267

Query  241  LPPVIVGGALFAAGIFWFGWTGFTADVPWIASTLSGLFTGFGLLIVFIQLFNYLIDTYLM  300
            L   ++   L A G+     T     +  +   L+ L  GFG  +VF  L   + D    
Sbjct  268  LLLALLLLILAALGLLLLSLT-----LSSLWLLLALLLLGFGFGLVFPALNALVSDLAPK  322

Query  301  -FAASAIAANTFCRSVLAASFP  321
                +A        S+  A  P
Sbjct  323  EERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.330    0.144    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00037331

Length=301


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.148    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00037330

Length=605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            117     2e-29


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 117 bits (296),  Expect = 2e-29, Method: Composition-based stats.
 Identities = 82/390 (21%), Positives = 136/390 (35%), Gaps = 48/390 (12%)

Query  138  LAFTSICSTFDSAVFSSSTGN-VARVFGVGVEVATLSSSLYILGYACGPLIWAPFSELQG  196
            L   +  +    ++   +    +A   G+      L  +L+ LGYA    +    S+  G
Sbjct  1    LFLAAFLAALGRSLLGPALPLLLAEDLGISPTEIGLLLTLFSLGYALAQPLAGRLSDRFG  60

Query  197  RRLPILIGMLGFGIFNIAVAVAKDLQTLLICRFFCGVFGSCPLAVVAAIFSDIFDNRSRG  256
            RR  +LIG+L F +  + +  A  L  LL+ R   G+          A+ +D F    RG
Sbjct  61   RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGAGALFPAALALIADWFPPEERG  120

Query  257  IAIAMFSSMVFLGPLIAPFIGGFINMSSLGWRWTAYLPAIMGFAALILNFFFLKESYPPV  316
             A+ + S+   LG  + P +GG +  S  GWR    + AI+   A +L            
Sbjct  121  RALGLVSAGFGLGAALGPLLGGLL-ASLFGWRAAFLILAILSLLAAVLLLLPRPPPESKR  179

Query  317  ILIYKAAELRRRTKNWGIHAKQEEIEIDLQELLVNNFSRPLRLLVHEPLILAVTLYLSFI  376
                + A L                                + L+ +P++    L    +
Sbjct  180  PKPAEEARLSLIV--------------------------AWKALLRDPVLWL--LLALLL  211

Query  377  YGLLYCFLTAYGLVYQGVYHMNAGVGGLPLFGMVVGLFIGGAYICLFASRAYNQKLQANA  436
            +G  +  L  Y  +YQ V  ++A + GL L G+   L   G  +    S           
Sbjct  212  FGFAFFGLLTYLPLYQEVLGLSALLAGL-LLGLGGLLGAIGRLLLGRLSDRLG-------  263

Query  437  GVPVPEWRLPPVIVGGALFAAGIFWFGWTGFTADVPWIASTLSGLFTGFGLLIVFIQLFN  496
                   RL   ++   L A G+     T     +  +   L+ L  GFG  +VF  L  
Sbjct  264  ----RRRRLLLALLLLILAALGLLLLSLT-----LSSLWLLLALLLLGFGFGLVFPALNA  314

Query  497  YLIDTYLM-FAASAIAANTFCRSVLAASFP  525
             + D        +A        S+  A  P
Sbjct  315  LVSDLAPKEERGTASGLYNTAGSLGGALGP  344



Lambda      K        H        a         alpha
   0.325    0.140    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 766641564


Query= TCONS_00037332

Length=342


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00037333

Length=56


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83716080


Query= TCONS_00037334

Length=214


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.138    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00037336

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00037335

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00037337

Length=65


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.126    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81636392


Query= TCONS_00037338

Length=228


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00037339

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00037340

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            64.0    1e-11


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 64.0 bits (156),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 74/218 (34%), Gaps = 21/218 (10%)

Query  247  TANVRIRWVYIIEGLFSLICAVLIWFGLPNDPSNAYFLTADEKHMMRVRNAQRAAYMGSS  306
             +    R  ++I  + SL+ AVL+    P                   R         S 
Sbjct  145  ASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--------------SKRPKPAEEARLSL  190

Query  307  QFSWAEMRIAITDPKLAFSAITQFCQDILLYGFSTFLPTILKGIGYDSLMSNILTVPVYF  366
              +W  +        + +  +         +G  T+LP   + +G  +L++ +L      
Sbjct  191  IVAWKALLR----DPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGL  246

Query  367  WAAIVFVSVAWAADRYS--RFALFLLVTNVFGLVGYILLLAVSNDAVKYFATYLIGIATY  424
              AI  + +   +DR    R  L  L+  +   +G +LL    +      A  L+G    
Sbjct  247  LGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFG  306

Query  425  TGVGLNIAWLNVNVAPHYRRALEIGVQQTIGNLAGIVS  462
                   A +  ++AP   R    G+  T G+L G + 
Sbjct  307  LVFPALNALV-SDLAPKEERGTASGLYNTAGSLGGALG  343



Lambda      K        H        a         alpha
   0.325    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 664674974


Query= TCONS_00037341

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            64.0    1e-11


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 64.0 bits (156),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 74/218 (34%), Gaps = 21/218 (10%)

Query  247  TANVRIRWVYIIEGLFSLICAVLIWFGLPNDPSNAYFLTADEKHMMRVRNAQRAAYMGSS  306
             +    R  ++I  + SL+ AVL+    P                   R         S 
Sbjct  145  ASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--------------SKRPKPAEEARLSL  190

Query  307  QFSWAEMRIAITDPKLAFSAITQFCQDILLYGFSTFLPTILKGIGYDSLMSNILTVPVYF  366
              +W  +        + +  +         +G  T+LP   + +G  +L++ +L      
Sbjct  191  IVAWKALLR----DPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGL  246

Query  367  WAAIVFVSVAWAADRYS--RFALFLLVTNVFGLVGYILLLAVSNDAVKYFATYLIGIATY  424
              AI  + +   +DR    R  L  L+  +   +G +LL    +      A  L+G    
Sbjct  247  LGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFG  306

Query  425  TGVGLNIAWLNVNVAPHYRRALEIGVQQTIGNLAGIVS  462
                   A +  ++AP   R    G+  T G+L G + 
Sbjct  307  LVFPALNALV-SDLAPKEERGTASGLYNTAGSLGGALG  343



Lambda      K        H        a         alpha
   0.325    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 664674974


Query= TCONS_00037342

Length=665
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  71.8    2e-14


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 71.8 bits (176),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 88/273 (32%), Gaps = 35/273 (13%)

Query  175  ISLYFTWDYPFYAFVDLRAF-VQHMQARNTHSDLCSPFLVNAMLANACHYSQYSEAYAIP  233
            + L+F   +P +  +   +F   + +  ++ S+  SP L+ A+LA    +S         
Sbjct  1    LDLFFKNFHPQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFS---------  51

Query  234  GDVKTKGCDFLAEAERHMHSYQLERGRSV----------RLASLQATLLLYERYSMSGDD  283
             +  T         E     +   R   +           L  LQA LLL      +GD 
Sbjct  52   -ESPTARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDR  110

Query  284  DLGYTMLHRAIDMAESLGIINGPVLDLDKLQMSEEMRSSIQRTAWGLFQVDTVVHTNFRK  343
             L +     AI +A SLG+   P       ++  E     +R  W  F +D ++     +
Sbjct  111  KLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGR  170

Query  344  PSKIHRVCVK----RIDRDESQPS--EQWAPYPTGRAPRPSFLSQYFDEACRLSFIARDV  397
            P  +    +       D D  +    ++          +      +     +LS I   +
Sbjct  171  PPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLI---KLSKILSKI  227

Query  398  SHHLY-----QDPKPDATHHEQKRELYDRLQEW  425
               L       D +         REL   L  W
Sbjct  228  LGSLLSIRSTLDQRDLQLKLSWVRELERALDNW  260



Lambda      K        H        a         alpha
   0.320    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 843579880


Query= TCONS_00043018

Length=240


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.140    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257638992


Query= TCONS_00037343

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily            64.0    1e-11


>CDD:429598 pfam07690, MFS_1, Major Facilitator Superfamily.  
Length=344

 Score = 64.0 bits (156),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 74/218 (34%), Gaps = 21/218 (10%)

Query  247  TANVRIRWVYIIEGLFSLICAVLIWFGLPNDPSNAYFLTADEKHMMRVRNAQRAAYMGSS  306
             +    R  ++I  + SL+ AVL+    P                   R         S 
Sbjct  145  ASLFGWRAAFLILAILSLLAAVLLLLPRPPPE--------------SKRPKPAEEARLSL  190

Query  307  QFSWAEMRIAITDPKLAFSAITQFCQDILLYGFSTFLPTILKGIGYDSLMSNILTVPVYF  366
              +W  +        + +  +         +G  T+LP   + +G  +L++ +L      
Sbjct  191  IVAWKALLR----DPVLWLLLALLLFGFAFFGLLTYLPLYQEVLGLSALLAGLLLGLGGL  246

Query  367  WAAIVFVSVAWAADRYS--RFALFLLVTNVFGLVGYILLLAVSNDAVKYFATYLIGIATY  424
              AI  + +   +DR    R  L  L+  +   +G +LL    +      A  L+G    
Sbjct  247  LGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLLLLSLTLSSLWLLLALLLLGFGFG  306

Query  425  TGVGLNIAWLNVNVAPHYRRALEIGVQQTIGNLAGIVS  462
                   A +  ++AP   R    G+  T G+L G + 
Sbjct  307  LVFPALNALV-SDLAPKEERGTASGLYNTAGSLGGALG  343



Lambda      K        H        a         alpha
   0.325    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 664674974


Query= TCONS_00037344

Length=263
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462133 pfam07286, DUF1445, Protein of unknown function (DUF14...  206     1e-68


>CDD:462133 pfam07286, DUF1445, Protein of unknown function (DUF1445).  This 
family represents a conserved region approximately 150 residues 
long within a number of hypothetical bacterial and eukaryotic 
proteins of unknown function.
Length=143

 Score = 206 bits (527),  Expect = 1e-68, Method: Composition-based stats.
 Identities = 62/116 (53%), Positives = 74/116 (64%), Gaps = 3/116 (3%)

Query  132  VGFLLGCSFSFEDALCEAGLPPRHQLTGRLVAMYRTTVPLMPAGVFSDACMVVSMRPYLL  191
            V FL+GCSFSFE+AL EAG+P RH   GR V MYRT +P  PAG FS   MVVSMRP   
Sbjct  1    VTFLIGCSFSFEEALLEAGIPVRHIEQGRNVPMYRTNIPCCPAGPFS-GPMVVSMRPIPK  59

Query  192  ADVEQVRQVTRPYGATHGEPVAWGWDGAERLGIKDIKTPDWGEAPVFEEGEVPVFW  247
              VE+  Q+T  + A HG PV  G      +GIKD+  PD+G+    + GEVPVFW
Sbjct  60   DKVERAVQITSRFPAVHGAPVHIGDP--ALIGIKDLSKPDYGDPVEIQPGEVPVFW  113



Lambda      K        H        a         alpha
   0.321    0.137    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 290477132


Query= TCONS_00037345

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462133 pfam07286, DUF1445, Protein of unknown function (DUF14...  256     1e-87


>CDD:462133 pfam07286, DUF1445, Protein of unknown function (DUF1445).  This 
family represents a conserved region approximately 150 residues 
long within a number of hypothetical bacterial and eukaryotic 
proteins of unknown function.
Length=143

 Score = 256 bits (657),  Expect = 1e-87, Method: Composition-based stats.
 Identities = 81/149 (54%), Positives = 94/149 (63%), Gaps = 6/149 (4%)

Query  132  VGFLLGCSFSFEDALCEAGLPPRHQLTGRLVAMYRTTVPLMPAGVFSDACMVVSMRPYLL  191
            V FL+GCSFSFE+AL EAG+P RH   GR V MYRT +P  PAG FS   MVVSMRP   
Sbjct  1    VTFLIGCSFSFEEALLEAGIPVRHIEQGRNVPMYRTNIPCCPAGPFS-GPMVVSMRPIPK  59

Query  192  ADVEQVRQVTRPYGATHGEPVAWGWDGAERLGIKDIKTPDWGEAPVFEEGEVPVFWACGV  251
              VE+  Q+T  + A HG PV  G      +GIKD+  PD+G+    + GEVPVFWACGV
Sbjct  60   DKVERAVQITSRFPAVHGAPVHIGDP--ALIGIKDLSKPDYGDPVEIQPGEVPVFWACGV  117

Query  252  TPQLAVEMAGEKIEGLVFAHEPGNMLVTD  280
            TPQ AV  A  K   L   H PG+M VTD
Sbjct  118  TPQEAVMSA--KP-PLAITHAPGHMFVTD  143



Lambda      K        H        a         alpha
   0.319    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00043019

Length=1336


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.133    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1704230800


Query= TCONS_00043020

Length=964


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.132    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1228980368


Query= TCONS_00037347

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460382 pfam01916, DS, Deoxyhypusine synthase. Eukaryotic init...  490     2e-176


>CDD:460382 pfam01916, DS, Deoxyhypusine synthase.  Eukaryotic initiation 
factor 5A (eIF-5A) contains an unusual amino acid, hypusine 
[N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The first step 
in the post-translational formation of hypusine is catalyzed 
by the enzyme deoxyhypusine synthase (DS) EC:1.1.1.249. The 
modified version of eIF-5A, and DS, are required for eukaryotic 
cell proliferation.
Length=287

 Score = 490 bits (1264),  Expect = 2e-176, Method: Composition-based stats.
 Identities = 169/310 (55%), Positives = 214/310 (69%), Gaps = 26/310 (8%)

Query  57   ELVDNMVHMGFQGSAVAEATRIINDMRAYRHPETGEKTTIFLGYTSNLISSGLRDTIRYL  116
            EL+++M   GFQ   + EA  I+N+M         E  TIFLG T N++S+GLR  I  L
Sbjct  1    ELLESMGKTGFQARNLGEAAEILNEMLK------DEDCTIFLGLTGNMVSAGLRGIIADL  54

Query  117  VRHRHVSAIVTTAGGVEEDLIKCLAP-TYMGSFSTPGAGLRAKGLNRIGNLIVPNSNYCA  175
            +RH  V  IVTT G +E D+IK L P  Y G F    A LR KG+NRIGN+++PN NYC 
Sbjct  55   IRHGMVDVIVTTGGNIEHDIIKALGPKHYKGDFDLDDAELREKGINRIGNVLIPNENYCK  114

Query  176  FEDWLIPILDKMLEEQEEAKKKAFRTGDEEDELHWTPSRVIERLGREIDNEDSVLYWAAR  235
            FEDW+ PILD++LEEQ+                 W+PS  I  LG+EI++EDS+LYWA +
Sbjct  115  FEDWIRPILDELLEEQK----------------IWSPSEFIRELGKEINDEDSILYWAYK  158

Query  236  NNIPIFCPALTDGSLGD-MLYFHTYRSSPQRLRVDIVDDVRRINTMAVRAARAGMIILGG  294
            NN+P+FCPALTDGS+GD +LYFH+Y+  P  L +DIV D+R +N +A +A + G IILGG
Sbjct  159  NNVPVFCPALTDGSIGDQLLYFHSYQ--PGDLVIDIVKDIRELNDIAFKAKKTGAIILGG  216

Query  295  GVIKHHIANACLMRNGAEHAVYINTAQEFDGSDAGARPDEAVSWGKIKADANAVKVYAEA  354
            GV KHHI NA L RNGA++AV I TAQEFDGS +GA PDEAVSWGKIK DA  VKVYA+A
Sbjct  217  GVPKHHIQNANLFRNGADYAVQITTAQEFDGSLSGATPDEAVSWGKIKPDAKPVKVYADA  276

Query  355  TVVFPMIVAA  364
            T+  P++VAA
Sbjct  277  TIALPLLVAA  286



Lambda      K        H        a         alpha
   0.318    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00037348

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460382 pfam01916, DS, Deoxyhypusine synthase. Eukaryotic init...  490     2e-176


>CDD:460382 pfam01916, DS, Deoxyhypusine synthase.  Eukaryotic initiation 
factor 5A (eIF-5A) contains an unusual amino acid, hypusine 
[N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The first step 
in the post-translational formation of hypusine is catalyzed 
by the enzyme deoxyhypusine synthase (DS) EC:1.1.1.249. The 
modified version of eIF-5A, and DS, are required for eukaryotic 
cell proliferation.
Length=287

 Score = 490 bits (1264),  Expect = 2e-176, Method: Composition-based stats.
 Identities = 169/310 (55%), Positives = 214/310 (69%), Gaps = 26/310 (8%)

Query  57   ELVDNMVHMGFQGSAVAEATRIINDMRAYRHPETGEKTTIFLGYTSNLISSGLRDTIRYL  116
            EL+++M   GFQ   + EA  I+N+M         E  TIFLG T N++S+GLR  I  L
Sbjct  1    ELLESMGKTGFQARNLGEAAEILNEMLK------DEDCTIFLGLTGNMVSAGLRGIIADL  54

Query  117  VRHRHVSAIVTTAGGVEEDLIKCLAP-TYMGSFSTPGAGLRAKGLNRIGNLIVPNSNYCA  175
            +RH  V  IVTT G +E D+IK L P  Y G F    A LR KG+NRIGN+++PN NYC 
Sbjct  55   IRHGMVDVIVTTGGNIEHDIIKALGPKHYKGDFDLDDAELREKGINRIGNVLIPNENYCK  114

Query  176  FEDWLIPILDKMLEEQEEAKKKAFRTGDEEDELHWTPSRVIERLGREIDNEDSVLYWAAR  235
            FEDW+ PILD++LEEQ+                 W+PS  I  LG+EI++EDS+LYWA +
Sbjct  115  FEDWIRPILDELLEEQK----------------IWSPSEFIRELGKEINDEDSILYWAYK  158

Query  236  NNIPIFCPALTDGSLGD-MLYFHTYRSSPQRLRVDIVDDVRRINTMAVRAARAGMIILGG  294
            NN+P+FCPALTDGS+GD +LYFH+Y+  P  L +DIV D+R +N +A +A + G IILGG
Sbjct  159  NNVPVFCPALTDGSIGDQLLYFHSYQ--PGDLVIDIVKDIRELNDIAFKAKKTGAIILGG  216

Query  295  GVIKHHIANACLMRNGAEHAVYINTAQEFDGSDAGARPDEAVSWGKIKADANAVKVYAEA  354
            GV KHHI NA L RNGA++AV I TAQEFDGS +GA PDEAVSWGKIK DA  VKVYA+A
Sbjct  217  GVPKHHIQNANLFRNGADYAVQITTAQEFDGSLSGATPDEAVSWGKIKPDAKPVKVYADA  276

Query  355  TVVFPMIVAA  364
            T+  P++VAA
Sbjct  277  TIALPLLVAA  286



Lambda      K        H        a         alpha
   0.318    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00037349

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460382 pfam01916, DS, Deoxyhypusine synthase. Eukaryotic init...  490     2e-176


>CDD:460382 pfam01916, DS, Deoxyhypusine synthase.  Eukaryotic initiation 
factor 5A (eIF-5A) contains an unusual amino acid, hypusine 
[N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The first step 
in the post-translational formation of hypusine is catalyzed 
by the enzyme deoxyhypusine synthase (DS) EC:1.1.1.249. The 
modified version of eIF-5A, and DS, are required for eukaryotic 
cell proliferation.
Length=287

 Score = 490 bits (1264),  Expect = 2e-176, Method: Composition-based stats.
 Identities = 169/310 (55%), Positives = 214/310 (69%), Gaps = 26/310 (8%)

Query  57   ELVDNMVHMGFQGSAVAEATRIINDMRAYRHPETGEKTTIFLGYTSNLISSGLRDTIRYL  116
            EL+++M   GFQ   + EA  I+N+M         E  TIFLG T N++S+GLR  I  L
Sbjct  1    ELLESMGKTGFQARNLGEAAEILNEMLK------DEDCTIFLGLTGNMVSAGLRGIIADL  54

Query  117  VRHRHVSAIVTTAGGVEEDLIKCLAP-TYMGSFSTPGAGLRAKGLNRIGNLIVPNSNYCA  175
            +RH  V  IVTT G +E D+IK L P  Y G F    A LR KG+NRIGN+++PN NYC 
Sbjct  55   IRHGMVDVIVTTGGNIEHDIIKALGPKHYKGDFDLDDAELREKGINRIGNVLIPNENYCK  114

Query  176  FEDWLIPILDKMLEEQEEAKKKAFRTGDEEDELHWTPSRVIERLGREIDNEDSVLYWAAR  235
            FEDW+ PILD++LEEQ+                 W+PS  I  LG+EI++EDS+LYWA +
Sbjct  115  FEDWIRPILDELLEEQK----------------IWSPSEFIRELGKEINDEDSILYWAYK  158

Query  236  NNIPIFCPALTDGSLGD-MLYFHTYRSSPQRLRVDIVDDVRRINTMAVRAARAGMIILGG  294
            NN+P+FCPALTDGS+GD +LYFH+Y+  P  L +DIV D+R +N +A +A + G IILGG
Sbjct  159  NNVPVFCPALTDGSIGDQLLYFHSYQ--PGDLVIDIVKDIRELNDIAFKAKKTGAIILGG  216

Query  295  GVIKHHIANACLMRNGAEHAVYINTAQEFDGSDAGARPDEAVSWGKIKADANAVKVYAEA  354
            GV KHHI NA L RNGA++AV I TAQEFDGS +GA PDEAVSWGKIK DA  VKVYA+A
Sbjct  217  GVPKHHIQNANLFRNGADYAVQITTAQEFDGSLSGATPDEAVSWGKIKPDAKPVKVYADA  276

Query  355  TVVFPMIVAA  364
            T+  P++VAA
Sbjct  277  TIALPLLVAA  286



Lambda      K        H        a         alpha
   0.318    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 455129206


Query= TCONS_00037350

Length=1155
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464042 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING f...  68.6    4e-15


>CDD:464042 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger). 
 
Length=50

 Score = 68.6 bits (168),  Expect = 4e-15, Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query  1104  EMDLCQICYSEEQDALFYDCGHVCACVTCA----RQVDICPICRKNIISV  1149
             E  LC IC    ++ +   CGH+C C  CA    R+   CPICR+ I SV
Sbjct  1     EDLLCVICLDRPRNVVLLPCGHLCLCEECAERLLRKKKKCPICRQPIESV  50



Lambda      K        H        a         alpha
   0.316    0.133    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0674    0.140     1.90     42.6     43.6 

Effective search space used: 1477219804


Query= TCONS_00037351

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460382 pfam01916, DS, Deoxyhypusine synthase. Eukaryotic init...  357     2e-126


>CDD:460382 pfam01916, DS, Deoxyhypusine synthase.  Eukaryotic initiation 
factor 5A (eIF-5A) contains an unusual amino acid, hypusine 
[N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The first step 
in the post-translational formation of hypusine is catalyzed 
by the enzyme deoxyhypusine synthase (DS) EC:1.1.1.249. The 
modified version of eIF-5A, and DS, are required for eukaryotic 
cell proliferation.
Length=287

 Score = 357 bits (920),  Expect = 2e-126, Method: Composition-based stats.
 Identities = 129/221 (58%), Positives = 162/221 (73%), Gaps = 19/221 (9%)

Query  1    MGSFSTPGAGLRAKGLNRIGNLIVPNSNYCAFEDWLIPILDKMLEEQEEAKKKAFRTGDE  60
             G F    A LR KG+NRIGN+++PN NYC FEDW+ PILD++LEEQ+            
Sbjct  84   KGDFDLDDAELREKGINRIGNVLIPNENYCKFEDWIRPILDELLEEQK------------  131

Query  61   EDELHWTPSRVIERLGREIDNEDSVLYWAARNNIPIFCPALTDGSLGD-MLYFHTYRSSP  119
                 W+PS  I  LG+EI++EDS+LYWA +NN+P+FCPALTDGS+GD +LYFH+Y+  P
Sbjct  132  ----IWSPSEFIRELGKEINDEDSILYWAYKNNVPVFCPALTDGSIGDQLLYFHSYQ--P  185

Query  120  QRLRVDIVDDVRRINTMAVRAARAGMIILGGGVIKHHIANACLMRNGAEHAVYINTAQEF  179
              L +DIV D+R +N +A +A + G IILGGGV KHHI NA L RNGA++AV I TAQEF
Sbjct  186  GDLVIDIVKDIRELNDIAFKAKKTGAIILGGGVPKHHIQNANLFRNGADYAVQITTAQEF  245

Query  180  DGSDAGARPDEAVSWGKIKADANAVKVYAEATVVFPMIVAA  220
            DGS +GA PDEAVSWGKIK DA  VKVYA+AT+  P++VAA
Sbjct  246  DGSLSGATPDEAVSWGKIKPDAKPVKVYADATIALPLLVAA  286



Lambda      K        H        a         alpha
   0.318    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00043021

Length=751
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426109 pfam01189, Methyltr_RsmB-F, 16S rRNA methyltransferase...  278     5e-90


>CDD:426109 pfam01189, Methyltr_RsmB-F, 16S rRNA methyltransferase RsmB/F. 
 This is the catalytic core of this SAM-dependent 16S ribosomal 
methyltransferase RsmB/F enzyme. There is a catalytic 
cysteine residue at 180 in UniProtKB:Q5SII2, with another highly 
conserved cysteine at residue 230. It methylates the C(5) 
position of cytosine 2870 (m5C2870) in 25S rRNA.
Length=199

 Score = 278 bits (714),  Expect = 5e-90, Method: Composition-based stats.
 Identities = 104/214 (49%), Positives = 131/214 (61%), Gaps = 17/214 (8%)

Query  373  VMALAPQPNERVLDMAAAPGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKN  432
             + LAPQ  E +LDM AAPGGKTT+I+ LM+N G V+A D +K R K +  NIHRLG  N
Sbjct  1    AILLAPQEGETILDMCAAPGGKTTHIAELMKNQGTVVAVDINKHRLKRVAENIHRLGVTN  60

Query  433  TIVTNLDARTAFPKALGG--FDRVLLDAPCTGTGVISKDPSVKTSKNERDFLAIPHMQRN  490
            TI+ N D R    + LGG  FDR+LLDAPC+GTGVI + P VK  + E D   +  +Q+ 
Sbjct  61   TIILNGDGRQ-PDQWLGGVLFDRILLDAPCSGTGVIRRHPDVKWLRQEADIAQLAQLQKE  119

Query  491  LLLAAIDSVDHASKTGGYIVYSTCSVTVEENEAVVQYALRKRPNVKLVDTGLGDFGSPGF  550
            LL AAID +    K GG +VYSTCSV  EENEAV++Y L+K P+V+LV T L +      
Sbjct  120  LLSAAIDLL----KPGGVLVYSTCSVLPEENEAVIEYFLQKHPDVELVPTPLFEP-----  170

Query  551  TSYMGKKFDPKMTLTRRYFPHRENVDGFFVCKLK  584
                          T R  PH  N DGFF+ KL+
Sbjct  171  -----VGLAIGEQPTLRLLPHTHNGDGFFIAKLR  199



Lambda      K        H        a         alpha
   0.309    0.129    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 956034864


Query= TCONS_00037353

Length=751
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426109 pfam01189, Methyltr_RsmB-F, 16S rRNA methyltransferase...  278     5e-90


>CDD:426109 pfam01189, Methyltr_RsmB-F, 16S rRNA methyltransferase RsmB/F. 
 This is the catalytic core of this SAM-dependent 16S ribosomal 
methyltransferase RsmB/F enzyme. There is a catalytic 
cysteine residue at 180 in UniProtKB:Q5SII2, with another highly 
conserved cysteine at residue 230. It methylates the C(5) 
position of cytosine 2870 (m5C2870) in 25S rRNA.
Length=199

 Score = 278 bits (714),  Expect = 5e-90, Method: Composition-based stats.
 Identities = 104/214 (49%), Positives = 131/214 (61%), Gaps = 17/214 (8%)

Query  373  VMALAPQPNERVLDMAAAPGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKN  432
             + LAPQ  E +LDM AAPGGKTT+I+ LM+N G V+A D +K R K +  NIHRLG  N
Sbjct  1    AILLAPQEGETILDMCAAPGGKTTHIAELMKNQGTVVAVDINKHRLKRVAENIHRLGVTN  60

Query  433  TIVTNLDARTAFPKALGG--FDRVLLDAPCTGTGVISKDPSVKTSKNERDFLAIPHMQRN  490
            TI+ N D R    + LGG  FDR+LLDAPC+GTGVI + P VK  + E D   +  +Q+ 
Sbjct  61   TIILNGDGRQ-PDQWLGGVLFDRILLDAPCSGTGVIRRHPDVKWLRQEADIAQLAQLQKE  119

Query  491  LLLAAIDSVDHASKTGGYIVYSTCSVTVEENEAVVQYALRKRPNVKLVDTGLGDFGSPGF  550
            LL AAID +    K GG +VYSTCSV  EENEAV++Y L+K P+V+LV T L +      
Sbjct  120  LLSAAIDLL----KPGGVLVYSTCSVLPEENEAVIEYFLQKHPDVELVPTPLFEP-----  170

Query  551  TSYMGKKFDPKMTLTRRYFPHRENVDGFFVCKLK  584
                          T R  PH  N DGFF+ KL+
Sbjct  171  -----VGLAIGEQPTLRLLPHTHNGDGFFIAKLR  199



Lambda      K        H        a         alpha
   0.309    0.129    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 956034864


Query= TCONS_00037354

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372291 pfam12754, Blt1, Blt1 N-terminal domain. During size-d...  265     3e-91
CDD:375036 pfam17183, Blt1_C, Get5 carboxyl domain. During size-d...  103     3e-29


>CDD:372291 pfam12754, Blt1, Blt1 N-terminal domain.  During size-dependent 
cell cycle transitions controlled by the ubiquitous cyclin-dependent 
kinase Cdk1, Blt1 has been shown to co-localize 
with Cdr2 in the medial interphase nodes, as well as with Mid1 
which was previously shown to localize to similar interphase 
structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 
and Cdr2-Mid1 were detected, indicating that medial cortical 
nodes are formed by the ordered, Cdr2-dependent assembly 
of multiple interacting proteins during interphase. This 
domain show similarity to ubiquitin family proteins.
Length=150

 Score = 265 bits (678),  Expect = 3e-91, Method: Composition-based stats.
 Identities = 110/151 (73%), Positives = 122/151 (81%), Gaps = 1/151 (1%)

Query  48   FVKSYLSTLDSRPIKLRSDHVFDPEQVGLRVPYTLPRLHAPHPEMPKKTKQPLAPGSSKS  107
            F KS+LS LDSRP+KL +DHVFDP     RVPYTLPRL  PHP MPKK K   APGSSKS
Sbjct  1    FTKSFLSALDSRPVKLPADHVFDPRSYPARVPYTLPRLSDPHPPMPKKVKNAAAPGSSKS  60

Query  108  ITVHLKSARNPALEFSLPNTALTTTSVQDLKDAVRERVTDAQGNKISLDKIKILYKRKPV  167
            ITVHLKSARNPALE +L N  L+TTSVQDLK+AV+ERV D Q   + LDKIKILYK+KPV
Sbjct  61   ITVHLKSARNPALEITLDNVPLSTTSVQDLKEAVQERVVD-QDASVPLDKIKILYKKKPV  119

Query  168  TGKTIAEVLADEPVRLSGGKEVEFGVMIIGG  198
            +GKT+AEVL  EP  LSGGKEVEFGVMI+GG
Sbjct  120  SGKTLAEVLGSEPEVLSGGKEVEFGVMIMGG  150


>CDD:375036 pfam17183, Blt1_C, Get5 carboxyl domain.  During size-dependent 
cell cycle transitions controlled by the ubiquitous cyclin-dependent 
kinase Cdk1, Blt1 has been shown to co-localize 
with Cdr2 in the medial interphase nodes, as well as with Mid1 
which was previously shown to localize to similar interphase 
structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 
and Cdr2-Mid1 were detected, indicating that medial cortical 
nodes are formed by the ordered, Cdr2-dependent assembly 
of multiple interacting proteins during interphase. This 
entry corresponds to the C-terminal dimerization domain.
Length=51

 Score = 103 bits (259),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 36/51 (71%), Positives = 43/51 (84%), Gaps = 0/51 (0%)

Query  221  PPKPAVGPSGESVVATEAFWDDLQGFLEQRLKDYDEANKLRVLFKEAWRSS  271
             PK AVGPSGE V+ATE FWDDL+GFLEQRLKD +EA++LR +F+ AW SS
Sbjct  1    APKAAVGPSGEEVLATEEFWDDLEGFLEQRLKDEEEASRLRGVFRGAWESS  51



Lambda      K        H        a         alpha
   0.311    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00037355

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372291 pfam12754, Blt1, Blt1 N-terminal domain. During size-d...  265     3e-91
CDD:375036 pfam17183, Blt1_C, Get5 carboxyl domain. During size-d...  103     3e-29


>CDD:372291 pfam12754, Blt1, Blt1 N-terminal domain.  During size-dependent 
cell cycle transitions controlled by the ubiquitous cyclin-dependent 
kinase Cdk1, Blt1 has been shown to co-localize 
with Cdr2 in the medial interphase nodes, as well as with Mid1 
which was previously shown to localize to similar interphase 
structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 
and Cdr2-Mid1 were detected, indicating that medial cortical 
nodes are formed by the ordered, Cdr2-dependent assembly 
of multiple interacting proteins during interphase. This 
domain show similarity to ubiquitin family proteins.
Length=150

 Score = 265 bits (678),  Expect = 3e-91, Method: Composition-based stats.
 Identities = 110/151 (73%), Positives = 122/151 (81%), Gaps = 1/151 (1%)

Query  48   FVKSYLSTLDSRPIKLRSDHVFDPEQVGLRVPYTLPRLHAPHPEMPKKTKQPLAPGSSKS  107
            F KS+LS LDSRP+KL +DHVFDP     RVPYTLPRL  PHP MPKK K   APGSSKS
Sbjct  1    FTKSFLSALDSRPVKLPADHVFDPRSYPARVPYTLPRLSDPHPPMPKKVKNAAAPGSSKS  60

Query  108  ITVHLKSARNPALEFSLPNTALTTTSVQDLKDAVRERVTDAQGNKISLDKIKILYKRKPV  167
            ITVHLKSARNPALE +L N  L+TTSVQDLK+AV+ERV D Q   + LDKIKILYK+KPV
Sbjct  61   ITVHLKSARNPALEITLDNVPLSTTSVQDLKEAVQERVVD-QDASVPLDKIKILYKKKPV  119

Query  168  TGKTIAEVLADEPVRLSGGKEVEFGVMIIGG  198
            +GKT+AEVL  EP  LSGGKEVEFGVMI+GG
Sbjct  120  SGKTLAEVLGSEPEVLSGGKEVEFGVMIMGG  150


>CDD:375036 pfam17183, Blt1_C, Get5 carboxyl domain.  During size-dependent 
cell cycle transitions controlled by the ubiquitous cyclin-dependent 
kinase Cdk1, Blt1 has been shown to co-localize 
with Cdr2 in the medial interphase nodes, as well as with Mid1 
which was previously shown to localize to similar interphase 
structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 
and Cdr2-Mid1 were detected, indicating that medial cortical 
nodes are formed by the ordered, Cdr2-dependent assembly 
of multiple interacting proteins during interphase. This 
entry corresponds to the C-terminal dimerization domain.
Length=51

 Score = 103 bits (259),  Expect = 3e-29, Method: Composition-based stats.
 Identities = 36/51 (71%), Positives = 43/51 (84%), Gaps = 0/51 (0%)

Query  221  PPKPAVGPSGESVVATEAFWDDLQGFLEQRLKDYDEANKLRVLFKEAWRSS  271
             PK AVGPSGE V+ATE FWDDL+GFLEQRLKD +EA++LR +F+ AW SS
Sbjct  1    APKAAVGPSGEEVLATEEFWDDLEGFLEQRLKDEEEASRLRGVFRGAWESS  51



Lambda      K        H        a         alpha
   0.311    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00037356

Length=742
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM re...  213     2e-64
CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with G...  155     2e-44
CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative...  127     1e-34


>CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM region, putative 
phosphate.  RSN1_7TM is the seven transmembrane domain 
region of putative phosphate transporter. The family is the 
7TM region of osmosensitive calcium-permeable cation channels.
Length=273

 Score = 213 bits (545),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 96/229 (42%), Positives = 134/229 (59%), Gaps = 21/229 (9%)

Query  491  RKFAVQGGIAALVIFWSIPSAAVGAISNITYLTSLLPFLGFIDKLPSSLKGVIAGLLPSA  550
            R+  V   I  L+IFW+IP A VG +SN+  LT + PFL +I +LP  L G++ GLLP  
Sbjct  1    RRLIVNLAIFLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILELPPKLLGLVTGLLPPL  60

Query  551  ALVLLMSFVPIICRCMSPRLKSNRNKRTLLTLVDSVLARRAGAPSTAHVELFTQSAHFCF  610
             L LLM+ +PII R                      L++  GAPS + +EL  QS +F F
Sbjct  61   LLSLLMALLPIILR---------------------FLSKLQGAPSRSDIELSVQSKYFAF  99

Query  611  QVVQVFLVTTLTSAASAATAQIIKNPLSAKDLLAQNLPKATNFYISYFLLQGLTMSSMAV  670
             VV VFLV TL S+AS+   QII NP S   LLA NLPKA+NF+I+Y LLQGL+ ++  +
Sbjct  100  LVVNVFLVFTLASSASSLIEQIIDNPTSIPTLLATNLPKASNFFITYILLQGLSGAAGEL  159

Query  671  VQVAGVLVFKFLSTFFDRSPRLLYRRWASLSGIGWGNVFPVFTNMGVIG  719
            +Q+  +++F     F D++PR  Y R+ +     +G V+PVF  +  IG
Sbjct  160  LQLGPLILFYIKRKFLDKTPRDKYERYTTPPSFDYGTVYPVFLLIFTIG  208


>CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport. 
 This family represents the first three transmembrane 
regions of 11-TM proteins involved in vesicle transport. 
In S. cerevisiae these proteins are members of the yeast facilitator 
superfamily and are integral membrane proteins localized 
to the cell periphery, in particular to the bud-neck region. 
The distribution is consistent with a role in late exocytosis 
which is in agreement with the proteins' ability to 
substitute for the function of Sro7p, required for the sorting 
of the protein Enap1 into Golgi-derived vesicles destined 
for the cell surface.
Length=158

 Score = 155 bits (393),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 61/150 (41%), Positives = 85/150 (57%), Gaps = 12/150 (8%)

Query  133  VIAFFWFGLFLVCRRTQLRWYAPRSHLPCWHQHERSPKLP-RGFINWFGQFLKISDAHVL  191
            VIA  +  LF + R    R YAPR++L    + ER+P LP  G   W    LKI D  +L
Sbjct  11   VIALVFLLLFSILRPKNKRVYAPRTYLA--PEEERTPPLPGTGLFGWIPPLLKIPDEEIL  68

Query  192  HSSSMDGYLFLRFLRVLCSTCFTGCLVTWPILIPIHVTGGAGN--------TQLDALS-F  242
              + +D Y+FLRFL++L      GCL+ WPIL+P++ TGG G         T LD LS  
Sbjct  69   QHAGLDAYVFLRFLKMLIKIFLVGCLIGWPILLPVNATGGNGEDDGDSLTRTGLDKLSSS  128

Query  243  SNVKDPTRYYAHAIMACIFFTYVFYVVTRE  272
            +NV+   R +AH ++A IF  +V Y++ RE
Sbjct  129  NNVEGSNRLWAHVVVAYIFTGFVLYLLYRE  158


>CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative phosphate 
transporter.  PHM7_cyt is the predicted cytosolic domain 
of integral membrane proteins, such as yeast PHM7 and TM63A_HUMAN 
TRANSMEMBRANE PROTEIN 63A. This domain usually precedes 
the 7TM region, pfam02714, and follows a RSN1_TM, pfam13967. 
Fold recognition programs consistently and with high significance 
predict this domain to be distantly homologous to 
RNA binding proteins from the RRM clan.
Length=164

 Score = 127 bits (322),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 53/197 (27%), Positives = 87/197 (44%), Gaps = 46/197 (23%)

Query  295  SRTVLFMSVPEDYKNEQKLRQVF-----GDSIRRIWITSDCKELMKKVRERDSLAYRLEK  349
            SRTVL   +P+D ++E+KLR  F     G  + R+ I  D K+L K V ER+    +LE 
Sbjct  1    SRTVLVTGIPKDLRSEEKLRSFFEELYPGTVVERVQIVRDVKKLPKLVEEREKAVRKLEA  60

Query  350  AETNLIRTANSARLRAFKKGVITSDTCLDCESGTHSWRKKIRRPSHRVK---LFGPKVDS  406
            A    ++     +                            +RP+H++    LFG KVD+
Sbjct  61   ALAKYLKNGKKPK----------------------------KRPTHKLGFLGLFGKKVDA  92

Query  407  ICWLRDELVKVSKEVEYLQEQHKNGKMKNLSALFIEFNSQSDAQIALQTLSHHQPLHMTP  466
            I +  ++L ++ +E+E  +E+      K L A F+ F S+  A  A        P  M P
Sbjct  93   IDYYTEKLEELEEEIEEEREKVDK---KPLGAAFVTFKSERSAAAAAA---QINPQLMHP  146

Query  467  RFIGIS----PKEVVWS  479
            +   +     P++V+W 
Sbjct  147  KGWTVELAPEPRDVIWE  163



Lambda      K        H        a         alpha
   0.324    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 942938496


Query= TCONS_00037357

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461572 pfam05181, XPA_C, XPA protein C-terminus                   89.5    2e-23


>CDD:461572 pfam05181, XPA_C, XPA protein C-terminus.  
Length=51

 Score = 89.5 bits (223),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 39/52 (75%), Gaps = 1/52 (2%)

Query  178  KYSLLTKTEAKEDYAPLPAAELRDEELLPHLERPNPHKSTWNNMMLYLRYQV  229
            KYSL+TKTEAKEDY  L   +L+D ELL  L++PNPH  TW +M LYLR QV
Sbjct  1    KYSLITKTEAKEDYL-LTDCDLKDRELLRFLKKPNPHNGTWGDMKLYLRLQV  51



Lambda      K        H        a         alpha
   0.313    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00043022

Length=690
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM re...  201     3e-60
CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with G...  144     7e-41
CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative...  127     9e-35


>CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM region, putative 
phosphate.  RSN1_7TM is the seven transmembrane domain 
region of putative phosphate transporter. The family is the 
7TM region of osmosensitive calcium-permeable cation channels.
Length=273

 Score = 201 bits (515),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 88/180 (49%), Positives = 121/180 (67%), Gaps = 0/180 (0%)

Query  509  RKFAVQGGIAALVIFWSIPSAAVGAISNITYLTSLLPFLGFIDKLPSSLKGVIAGLLPSA  568
            R+  V   I  L+IFW+IP A VG +SN+  LT + PFL +I +LP  L G++ GLLP  
Sbjct  1    RRLIVNLAIFLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILELPPKLLGLVTGLLPPL  60

Query  569  ALVLLMSFVPIICRFLARRAGAPSTAHVELFTQSAHFCFQVVQVFLVTTLTSAASAATAQ  628
             L LLM+ +PII RFL++  GAPS + +EL  QS +F F VV VFLV TL S+AS+   Q
Sbjct  61   LLSLLMALLPIILRFLSKLQGAPSRSDIELSVQSKYFAFLVVNVFLVFTLASSASSLIEQ  120

Query  629  IIKNPLSAKDLLAQNLPKATNFYISYFLLQGLTMSSMAVVQVAGVLVFKFLSTFFDRSPR  688
            II NP S   LLA NLPKA+NF+I+Y LLQGL+ ++  ++Q+  +++F     F D++PR
Sbjct  121  IIDNPTSIPTLLATNLPKASNFFITYILLQGLSGAAGELLQLGPLILFYIKRKFLDKTPR  180


>CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport. 
 This family represents the first three transmembrane 
regions of 11-TM proteins involved in vesicle transport. 
In S. cerevisiae these proteins are members of the yeast facilitator 
superfamily and are integral membrane proteins localized 
to the cell periphery, in particular to the bud-neck region. 
The distribution is consistent with a role in late exocytosis 
which is in agreement with the proteins' ability to 
substitute for the function of Sro7p, required for the sorting 
of the protein Enap1 into Golgi-derived vesicles destined 
for the cell surface.
Length=158

 Score = 144 bits (366),  Expect = 7e-41, Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 85/168 (51%), Gaps = 30/168 (18%)

Query  133  VIAFFWFGLFLVCRRTQLRWYAPRSHLPCWHQHERSPKLP-RGFINWFGQFLKISDAHVL  191
            VIA  +  LF + R    R YAPR++L    + ER+P LP  G   W    LKI D  +L
Sbjct  11   VIALVFLLLFSILRPKNKRVYAPRTYLA--PEEERTPPLPGTGLFGWIPPLLKIPDEEIL  68

Query  192  HSSSMDGYLFLRFLRVLCSTCFTGCLVTWPILIPIHVTGGAGN--------TQLDALS-F  242
              + +D Y+FLRFL++L      GCL+ WPIL+P++ TGG G         T LD LS  
Sbjct  69   QHAGLDAYVFLRFLKMLIKIFLVGCLIGWPILLPVNATGGNGEDDGDSLTRTGLDKLSSS  128

Query  243  SNVKDPTRYYAHAIMACIFFSMCFWGLFQAKSLIRDTAAYVFYVVTRE  290
            +NV+   R +AH ++A IF                    +V Y++ RE
Sbjct  129  NNVEGSNRLWAHVVVAYIFT------------------GFVLYLLYRE  158


>CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative phosphate 
transporter.  PHM7_cyt is the predicted cytosolic domain 
of integral membrane proteins, such as yeast PHM7 and TM63A_HUMAN 
TRANSMEMBRANE PROTEIN 63A. This domain usually precedes 
the 7TM region, pfam02714, and follows a RSN1_TM, pfam13967. 
Fold recognition programs consistently and with high significance 
predict this domain to be distantly homologous to 
RNA binding proteins from the RRM clan.
Length=164

 Score = 127 bits (322),  Expect = 9e-35, Method: Composition-based stats.
 Identities = 53/197 (27%), Positives = 87/197 (44%), Gaps = 46/197 (23%)

Query  313  SRTVLFMSVPEDYKNEQKLRQVF-----GDSIRRIWITSDCKELMKKVRERDSLAYRLEK  367
            SRTVL   +P+D ++E+KLR  F     G  + R+ I  D K+L K V ER+    +LE 
Sbjct  1    SRTVLVTGIPKDLRSEEKLRSFFEELYPGTVVERVQIVRDVKKLPKLVEEREKAVRKLEA  60

Query  368  AETNLIRTANSARLRAFKKGVITSDTCLDCESGTHSWRKKIRRPSHRVK---LFGPKVDS  424
            A    ++     +                            +RP+H++    LFG KVD+
Sbjct  61   ALAKYLKNGKKPK----------------------------KRPTHKLGFLGLFGKKVDA  92

Query  425  ICWLRDELVKVSKEVEYLQEQHKNGKMKNLSALFIEFNSQSDAQIALQTLSHHQPLHMTP  484
            I +  ++L ++ +E+E  +E+      K L A F+ F S+  A  A        P  M P
Sbjct  93   IDYYTEKLEELEEEIEEEREKVDK---KPLGAAFVTFKSERSAAAAAA---QINPQLMHP  146

Query  485  RFIGIS----PKEVVWS  497
            +   +     P++V+W 
Sbjct  147  KGWTVELAPEPRDVIWE  163



Lambda      K        H        a         alpha
   0.325    0.136    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 880449630


Query= TCONS_00043023

Length=958
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM re...  304     6e-97
CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with G...  145     1e-40
CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putat...  124     2e-34
CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative...  126     4e-34


>CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM region, putative 
phosphate.  RSN1_7TM is the seven transmembrane domain 
region of putative phosphate transporter. The family is the 
7TM region of osmosensitive calcium-permeable cation channels.
Length=273

 Score = 304 bits (781),  Expect = 6e-97, Method: Composition-based stats.
 Identities = 127/294 (43%), Positives = 174/294 (59%), Gaps = 21/294 (7%)

Query  509  RKFAVQGGIAALVIFWSIPSAAVGAISNITYLTSLLPFLGFIDKLPSSLKGVIAGLLPSA  568
            R+  V   I  L+IFW+IP A VG +SN+  LT + PFL +I +LP  L G++ GLLP  
Sbjct  1    RRLIVNLAIFLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILELPPKLLGLVTGLLPPL  60

Query  569  ALVLLMSFVPIICRCMSPRLKSNRNKRTLLTLVDSVLARRAGAPSTAHVELFTQSAHFCF  628
             L LLM+ +PII R                      L++  GAPS + +EL  QS +F F
Sbjct  61   LLSLLMALLPIILR---------------------FLSKLQGAPSRSDIELSVQSKYFAF  99

Query  629  QVVQVFLVTTLTSAASAATAQIIKNPLSAKDLLAQNLPKATNFYISYFLLQGLTMSSMAV  688
             VV VFLV TL S+AS+   QII NP S   LLA NLPKA+NF+I+Y LLQGL+ ++  +
Sbjct  100  LVVNVFLVFTLASSASSLIEQIIDNPTSIPTLLATNLPKASNFFITYILLQGLSGAAGEL  159

Query  689  VQVAGVLVFKFLSTFFDRSPRLLYRRWASLSGIGWGNVFPVFTNMGVIALTYSCIAPLIL  748
            +Q+  +++F     F D++PR  Y R+ +     +G V+PVF  +  I L YS IAPLIL
Sbjct  160  LQLGPLILFYIKRKFLDKTPRDKYERYTTPPSFDYGTVYPVFLLIFTIGLIYSVIAPLIL  219

Query  749  GFAFVGLYLVYQAYRYNFLFVYDIEIDTKGLVYPRALQHLLTGIYLANICMIGL  802
             F  V   L Y  Y+Y  L+VY  + ++ G  +PRAL  LL G+YL  +C+IGL
Sbjct  220  PFGLVYFGLGYFVYKYQLLYVYVTKYESGGRFWPRALNRLLVGLYLFQLCLIGL  273


>CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport. 
 This family represents the first three transmembrane 
regions of 11-TM proteins involved in vesicle transport. 
In S. cerevisiae these proteins are members of the yeast facilitator 
superfamily and are integral membrane proteins localized 
to the cell periphery, in particular to the bud-neck region. 
The distribution is consistent with a role in late exocytosis 
which is in agreement with the proteins' ability to 
substitute for the function of Sro7p, required for the sorting 
of the protein Enap1 into Golgi-derived vesicles destined 
for the cell surface.
Length=158

 Score = 145 bits (367),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 85/168 (51%), Gaps = 30/168 (18%)

Query  133  VIAFFWFGLFLVCRRTQLRWYAPRSHLPCWHQHERSPKLP-RGFINWFGQFLKISDAHVL  191
            VIA  +  LF + R    R YAPR++L    + ER+P LP  G   W    LKI D  +L
Sbjct  11   VIALVFLLLFSILRPKNKRVYAPRTYLA--PEEERTPPLPGTGLFGWIPPLLKIPDEEIL  68

Query  192  HSSSMDGYLFLRFLRVLCSTCFTGCLVTWPILIPIHVTGGAGN--------TQLDALS-F  242
              + +D Y+FLRFL++L      GCL+ WPIL+P++ TGG G         T LD LS  
Sbjct  69   QHAGLDAYVFLRFLKMLIKIFLVGCLIGWPILLPVNATGGNGEDDGDSLTRTGLDKLSSS  128

Query  243  SNVKDPTRYYAHAIMACIFFSMCFWGLFQAKSLIRDTAAYVFYVVTRE  290
            +NV+   R +AH ++A IF                    +V Y++ RE
Sbjct  129  NNVEGSNRLWAHVVVAYIFT------------------GFVLYLLYRE  158


>CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putative phosphate 
transporter.  This PHM7_ext family is found in plants 
and fungi. It represents the C-terminal extracellular domain 
of the putative phosphate transporter, PHM7. The three N-terminal 
TMS are found in family RSN1_TM, pfam02714; the cytoplssmic 
domain is pfam14703, and the remaining 7TM region is 
in pfam02714.
Length=84

 Score = 124 bits (314),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query  882  DYAALRRKVRRDH-VEIRYSEEEERNAYFEPCIRARTPTLWIPRDKWGFSHQEIIETHPS  940
             YAALR+ +  ++  E  Y EE  ++AY  P + ++ P LWIPRD  G S QEI ET   
Sbjct  1    SYAALRKLLPHEYNDEPEYDEELLKHAYLHPAVTSKPPILWIPRDPMGVSKQEIAETEKV  60

Query  941  IPITDEGAHLDEKNKFVW  958
            IPI+DEGA LDEK K VW
Sbjct  61   IPISDEGAWLDEKGKIVW  78


>CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative phosphate 
transporter.  PHM7_cyt is the predicted cytosolic domain 
of integral membrane proteins, such as yeast PHM7 and TM63A_HUMAN 
TRANSMEMBRANE PROTEIN 63A. This domain usually precedes 
the 7TM region, pfam02714, and follows a RSN1_TM, pfam13967. 
Fold recognition programs consistently and with high significance 
predict this domain to be distantly homologous to 
RNA binding proteins from the RRM clan.
Length=164

 Score = 126 bits (319),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 53/197 (27%), Positives = 87/197 (44%), Gaps = 46/197 (23%)

Query  313  SRTVLFMSVPEDYKNEQKLRQVF-----GDSIRRIWITSDCKELMKKVRERDSLAYRLEK  367
            SRTVL   +P+D ++E+KLR  F     G  + R+ I  D K+L K V ER+    +LE 
Sbjct  1    SRTVLVTGIPKDLRSEEKLRSFFEELYPGTVVERVQIVRDVKKLPKLVEEREKAVRKLEA  60

Query  368  AETNLIRTANSARLRAFKKGVITSDTCLDCESGTHSWRKKIRRPSHRVK---LFGPKVDS  424
            A    ++     +                            +RP+H++    LFG KVD+
Sbjct  61   ALAKYLKNGKKPK----------------------------KRPTHKLGFLGLFGKKVDA  92

Query  425  ICWLRDELVKVSKEVEYLQEQHKNGKMKNLSALFIEFNSQSDAQIALQTLSHHQPLHMTP  484
            I +  ++L ++ +E+E  +E+      K L A F+ F S+  A  A        P  M P
Sbjct  93   IDYYTEKLEELEEEIEEEREKVDK---KPLGAAFVTFKSERSAAAAAA---QINPQLMHP  146

Query  485  RFIGIS----PKEVVWS  497
            +   +     P++V+W 
Sbjct  147  KGWTVELAPEPRDVIWE  163



Lambda      K        H        a         alpha
   0.325    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1220485112


Query= TCONS_00037358

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00043024

Length=961
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM re...  304     5e-97
CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with G...  145     1e-40
CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putat...  126     6e-35
CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative...  126     5e-34


>CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM region, putative 
phosphate.  RSN1_7TM is the seven transmembrane domain 
region of putative phosphate transporter. The family is the 
7TM region of osmosensitive calcium-permeable cation channels.
Length=273

 Score = 304 bits (782),  Expect = 5e-97, Method: Composition-based stats.
 Identities = 127/294 (43%), Positives = 174/294 (59%), Gaps = 21/294 (7%)

Query  509  RKFAVQGGIAALVIFWSIPSAAVGAISNITYLTSLLPFLGFIDKLPSSLKGVIAGLLPSA  568
            R+  V   I  L+IFW+IP A VG +SN+  LT + PFL +I +LP  L G++ GLLP  
Sbjct  1    RRLIVNLAIFLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILELPPKLLGLVTGLLPPL  60

Query  569  ALVLLMSFVPIICRCMSPRLKSNRNKRTLLTLVDSVLARRAGAPSTAHVELFTQSAHFCF  628
             L LLM+ +PII R                      L++  GAPS + +EL  QS +F F
Sbjct  61   LLSLLMALLPIILR---------------------FLSKLQGAPSRSDIELSVQSKYFAF  99

Query  629  QVVQVFLVTTLTSAASAATAQIIKNPLSAKDLLAQNLPKATNFYISYFLLQGLTMSSMAV  688
             VV VFLV TL S+AS+   QII NP S   LLA NLPKA+NF+I+Y LLQGL+ ++  +
Sbjct  100  LVVNVFLVFTLASSASSLIEQIIDNPTSIPTLLATNLPKASNFFITYILLQGLSGAAGEL  159

Query  689  VQVAGVLVFKFLSTFFDRSPRLLYRRWASLSGIGWGNVFPVFTNMGVIALTYSCIAPLIL  748
            +Q+  +++F     F D++PR  Y R+ +     +G V+PVF  +  I L YS IAPLIL
Sbjct  160  LQLGPLILFYIKRKFLDKTPRDKYERYTTPPSFDYGTVYPVFLLIFTIGLIYSVIAPLIL  219

Query  749  GFAFVGLYLVYQAYRYNFLFVYDIEIDTKGLVYPRALQHLLTGIYLANICMIGL  802
             F  V   L Y  Y+Y  L+VY  + ++ G  +PRAL  LL G+YL  +C+IGL
Sbjct  220  PFGLVYFGLGYFVYKYQLLYVYVTKYESGGRFWPRALNRLLVGLYLFQLCLIGL  273


>CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport. 
 This family represents the first three transmembrane 
regions of 11-TM proteins involved in vesicle transport. 
In S. cerevisiae these proteins are members of the yeast facilitator 
superfamily and are integral membrane proteins localized 
to the cell periphery, in particular to the bud-neck region. 
The distribution is consistent with a role in late exocytosis 
which is in agreement with the proteins' ability to 
substitute for the function of Sro7p, required for the sorting 
of the protein Enap1 into Golgi-derived vesicles destined 
for the cell surface.
Length=158

 Score = 145 bits (367),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 85/168 (51%), Gaps = 30/168 (18%)

Query  133  VIAFFWFGLFLVCRRTQLRWYAPRSHLPCWHQHERSPKLP-RGFINWFGQFLKISDAHVL  191
            VIA  +  LF + R    R YAPR++L    + ER+P LP  G   W    LKI D  +L
Sbjct  11   VIALVFLLLFSILRPKNKRVYAPRTYLA--PEEERTPPLPGTGLFGWIPPLLKIPDEEIL  68

Query  192  HSSSMDGYLFLRFLRVLCSTCFTGCLVTWPILIPIHVTGGAGN--------TQLDALS-F  242
              + +D Y+FLRFL++L      GCL+ WPIL+P++ TGG G         T LD LS  
Sbjct  69   QHAGLDAYVFLRFLKMLIKIFLVGCLIGWPILLPVNATGGNGEDDGDSLTRTGLDKLSSS  128

Query  243  SNVKDPTRYYAHAIMACIFFSMCFWGLFQAKSLIRDTAAYVFYVVTRE  290
            +NV+   R +AH ++A IF                    +V Y++ RE
Sbjct  129  NNVEGSNRLWAHVVVAYIFT------------------GFVLYLLYRE  158


>CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putative phosphate 
transporter.  This PHM7_ext family is found in plants 
and fungi. It represents the C-terminal extracellular domain 
of the putative phosphate transporter, PHM7. The three N-terminal 
TMS are found in family RSN1_TM, pfam02714; the cytoplssmic 
domain is pfam14703, and the remaining 7TM region is 
in pfam02714.
Length=84

 Score = 126 bits (318),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 40/79 (51%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query  882  DYAALRRKVRRDH-VEIRYSEEEERNAYFEPCIRARTPTLWIPRDKWGFSHQEIIETHPS  940
             YAALR+ +  ++  E  Y EE  ++AY  P + ++ P LWIPRD  G S QEI ET   
Sbjct  1    SYAALRKLLPHEYNDEPEYDEELLKHAYLHPAVTSKPPILWIPRDPMGVSKQEIAETEKV  60

Query  941  IPITDEGAHLDEKNKFVWD  959
            IPI+DEGA LDEK K VW 
Sbjct  61   IPISDEGAWLDEKGKIVWT  79


>CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative phosphate 
transporter.  PHM7_cyt is the predicted cytosolic domain 
of integral membrane proteins, such as yeast PHM7 and TM63A_HUMAN 
TRANSMEMBRANE PROTEIN 63A. This domain usually precedes 
the 7TM region, pfam02714, and follows a RSN1_TM, pfam13967. 
Fold recognition programs consistently and with high significance 
predict this domain to be distantly homologous to 
RNA binding proteins from the RRM clan.
Length=164

 Score = 126 bits (319),  Expect = 5e-34, Method: Composition-based stats.
 Identities = 53/197 (27%), Positives = 87/197 (44%), Gaps = 46/197 (23%)

Query  313  SRTVLFMSVPEDYKNEQKLRQVF-----GDSIRRIWITSDCKELMKKVRERDSLAYRLEK  367
            SRTVL   +P+D ++E+KLR  F     G  + R+ I  D K+L K V ER+    +LE 
Sbjct  1    SRTVLVTGIPKDLRSEEKLRSFFEELYPGTVVERVQIVRDVKKLPKLVEEREKAVRKLEA  60

Query  368  AETNLIRTANSARLRAFKKGVITSDTCLDCESGTHSWRKKIRRPSHRVK---LFGPKVDS  424
            A    ++     +                            +RP+H++    LFG KVD+
Sbjct  61   ALAKYLKNGKKPK----------------------------KRPTHKLGFLGLFGKKVDA  92

Query  425  ICWLRDELVKVSKEVEYLQEQHKNGKMKNLSALFIEFNSQSDAQIALQTLSHHQPLHMTP  484
            I +  ++L ++ +E+E  +E+      K L A F+ F S+  A  A        P  M P
Sbjct  93   IDYYTEKLEELEEEIEEEREKVDK---KPLGAAFVTFKSERSAAAAAA---QINPQLMHP  146

Query  485  RFIGIS----PKEVVWS  497
            +   +     P++V+W 
Sbjct  147  KGWTVELAPEPRDVIWE  163



Lambda      K        H        a         alpha
   0.325    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1224732740


Query= TCONS_00043025

Length=722
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM re...  254     5e-80
CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with G...  153     9e-44
CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative...  127     1e-34


>CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM region, putative 
phosphate.  RSN1_7TM is the seven transmembrane domain 
region of putative phosphate transporter. The family is the 
7TM region of osmosensitive calcium-permeable cation channels.
Length=273

 Score = 254 bits (652),  Expect = 5e-80, Method: Composition-based stats.
 Identities = 109/230 (47%), Positives = 147/230 (64%), Gaps = 0/230 (0%)

Query  491  RKFAVQGGIAALVIFWSIPSAAVGAISNITYLTSLLPFLGFIDKLPSSLKGVIAGLLPSA  550
            R+  V   I  L+IFW+IP A VG +SN+  LT + PFL +I +LP  L G++ GLLP  
Sbjct  1    RRLIVNLAIFLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILELPPKLLGLVTGLLPPL  60

Query  551  ALVLLMSFVPIICRFLARRAGAPSTAHVELFTQSAHFCFQVVQVFLVTTLTSAASAATAQ  610
             L LLM+ +PII RFL++  GAPS + +EL  QS +F F VV VFLV TL S+AS+   Q
Sbjct  61   LLSLLMALLPIILRFLSKLQGAPSRSDIELSVQSKYFAFLVVNVFLVFTLASSASSLIEQ  120

Query  611  IIKNPLSAKDLLAQNLPKATNFYISYFLLQGLTMSSMAVVQVAGVLVFKFLSTFFDRSPR  670
            II NP S   LLA NLPKA+NF+I+Y LLQGL+ ++  ++Q+  +++F     F D++PR
Sbjct  121  IIDNPTSIPTLLATNLPKASNFFITYILLQGLSGAAGELLQLGPLILFYIKRKFLDKTPR  180

Query  671  LLYRRWASLSGIGWGNVFPVFTNMGVIALTYSCIAPLILGFAFVGLYLVY  720
              Y R+ +     +G V+PVF  +  I L YS IAPLIL F  V   L Y
Sbjct  181  DKYERYTTPPSFDYGTVYPVFLLIFTIGLIYSVIAPLILPFGLVYFGLGY  230


>CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport. 
 This family represents the first three transmembrane 
regions of 11-TM proteins involved in vesicle transport. 
In S. cerevisiae these proteins are members of the yeast facilitator 
superfamily and are integral membrane proteins localized 
to the cell periphery, in particular to the bud-neck region. 
The distribution is consistent with a role in late exocytosis 
which is in agreement with the proteins' ability to 
substitute for the function of Sro7p, required for the sorting 
of the protein Enap1 into Golgi-derived vesicles destined 
for the cell surface.
Length=158

 Score = 153 bits (388),  Expect = 9e-44, Method: Composition-based stats.
 Identities = 61/150 (41%), Positives = 85/150 (57%), Gaps = 12/150 (8%)

Query  133  VIAFFWFGLFLVCRRTQLRWYAPRSHLPCWHQHERSPKLP-RGFINWFGQFLKISDAHVL  191
            VIA  +  LF + R    R YAPR++L    + ER+P LP  G   W    LKI D  +L
Sbjct  11   VIALVFLLLFSILRPKNKRVYAPRTYLA--PEEERTPPLPGTGLFGWIPPLLKIPDEEIL  68

Query  192  HSSSMDGYLFLRFLRVLCSTCFTGCLVTWPILIPIHVTGGAGN--------TQLDALS-F  242
              + +D Y+FLRFL++L      GCL+ WPIL+P++ TGG G         T LD LS  
Sbjct  69   QHAGLDAYVFLRFLKMLIKIFLVGCLIGWPILLPVNATGGNGEDDGDSLTRTGLDKLSSS  128

Query  243  SNVKDPTRYYAHAIMACIFFTYVFYVVTRE  272
            +NV+   R +AH ++A IF  +V Y++ RE
Sbjct  129  NNVEGSNRLWAHVVVAYIFTGFVLYLLYRE  158


>CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative phosphate 
transporter.  PHM7_cyt is the predicted cytosolic domain 
of integral membrane proteins, such as yeast PHM7 and TM63A_HUMAN 
TRANSMEMBRANE PROTEIN 63A. This domain usually precedes 
the 7TM region, pfam02714, and follows a RSN1_TM, pfam13967. 
Fold recognition programs consistently and with high significance 
predict this domain to be distantly homologous to 
RNA binding proteins from the RRM clan.
Length=164

 Score = 127 bits (322),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 53/197 (27%), Positives = 87/197 (44%), Gaps = 46/197 (23%)

Query  295  SRTVLFMSVPEDYKNEQKLRQVF-----GDSIRRIWITSDCKELMKKVRERDSLAYRLEK  349
            SRTVL   +P+D ++E+KLR  F     G  + R+ I  D K+L K V ER+    +LE 
Sbjct  1    SRTVLVTGIPKDLRSEEKLRSFFEELYPGTVVERVQIVRDVKKLPKLVEEREKAVRKLEA  60

Query  350  AETNLIRTANSARLRAFKKGVITSDTCLDCESGTHSWRKKIRRPSHRVK---LFGPKVDS  406
            A    ++     +                            +RP+H++    LFG KVD+
Sbjct  61   ALAKYLKNGKKPK----------------------------KRPTHKLGFLGLFGKKVDA  92

Query  407  ICWLRDELVKVSKEVEYLQEQHKNGKMKNLSALFIEFNSQSDAQIALQTLSHHQPLHMTP  466
            I +  ++L ++ +E+E  +E+      K L A F+ F S+  A  A        P  M P
Sbjct  93   IDYYTEKLEELEEEIEEEREKVDK---KPLGAAFVTFKSERSAAAAAA---QINPQLMHP  146

Query  467  RFIGIS----PKEVVWS  479
            +   +     P++V+W 
Sbjct  147  KGWTVELAPEPRDVIWE  163



Lambda      K        H        a         alpha
   0.325    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 913835456


Query= TCONS_00043026

Length=742
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM re...  213     2e-64
CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with G...  155     2e-44
CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative...  127     1e-34


>CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM region, putative 
phosphate.  RSN1_7TM is the seven transmembrane domain 
region of putative phosphate transporter. The family is the 
7TM region of osmosensitive calcium-permeable cation channels.
Length=273

 Score = 213 bits (545),  Expect = 2e-64, Method: Composition-based stats.
 Identities = 96/229 (42%), Positives = 134/229 (59%), Gaps = 21/229 (9%)

Query  491  RKFAVQGGIAALVIFWSIPSAAVGAISNITYLTSLLPFLGFIDKLPSSLKGVIAGLLPSA  550
            R+  V   I  L+IFW+IP A VG +SN+  LT + PFL +I +LP  L G++ GLLP  
Sbjct  1    RRLIVNLAIFLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILELPPKLLGLVTGLLPPL  60

Query  551  ALVLLMSFVPIICRCMSPRLKSNRNKRTLLTLVDSVLARRAGAPSTAHVELFTQSAHFCF  610
             L LLM+ +PII R                      L++  GAPS + +EL  QS +F F
Sbjct  61   LLSLLMALLPIILR---------------------FLSKLQGAPSRSDIELSVQSKYFAF  99

Query  611  QVVQVFLVTTLTSAASAATAQIIKNPLSAKDLLAQNLPKATNFYISYFLLQGLTMSSMAV  670
             VV VFLV TL S+AS+   QII NP S   LLA NLPKA+NF+I+Y LLQGL+ ++  +
Sbjct  100  LVVNVFLVFTLASSASSLIEQIIDNPTSIPTLLATNLPKASNFFITYILLQGLSGAAGEL  159

Query  671  VQVAGVLVFKFLSTFFDRSPRLLYRRWASLSGIGWGNVFPVFTNMGVIG  719
            +Q+  +++F     F D++PR  Y R+ +     +G V+PVF  +  IG
Sbjct  160  LQLGPLILFYIKRKFLDKTPRDKYERYTTPPSFDYGTVYPVFLLIFTIG  208


>CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport. 
 This family represents the first three transmembrane 
regions of 11-TM proteins involved in vesicle transport. 
In S. cerevisiae these proteins are members of the yeast facilitator 
superfamily and are integral membrane proteins localized 
to the cell periphery, in particular to the bud-neck region. 
The distribution is consistent with a role in late exocytosis 
which is in agreement with the proteins' ability to 
substitute for the function of Sro7p, required for the sorting 
of the protein Enap1 into Golgi-derived vesicles destined 
for the cell surface.
Length=158

 Score = 155 bits (393),  Expect = 2e-44, Method: Composition-based stats.
 Identities = 61/150 (41%), Positives = 85/150 (57%), Gaps = 12/150 (8%)

Query  133  VIAFFWFGLFLVCRRTQLRWYAPRSHLPCWHQHERSPKLP-RGFINWFGQFLKISDAHVL  191
            VIA  +  LF + R    R YAPR++L    + ER+P LP  G   W    LKI D  +L
Sbjct  11   VIALVFLLLFSILRPKNKRVYAPRTYLA--PEEERTPPLPGTGLFGWIPPLLKIPDEEIL  68

Query  192  HSSSMDGYLFLRFLRVLCSTCFTGCLVTWPILIPIHVTGGAGN--------TQLDALS-F  242
              + +D Y+FLRFL++L      GCL+ WPIL+P++ TGG G         T LD LS  
Sbjct  69   QHAGLDAYVFLRFLKMLIKIFLVGCLIGWPILLPVNATGGNGEDDGDSLTRTGLDKLSSS  128

Query  243  SNVKDPTRYYAHAIMACIFFTYVFYVVTRE  272
            +NV+   R +AH ++A IF  +V Y++ RE
Sbjct  129  NNVEGSNRLWAHVVVAYIFTGFVLYLLYRE  158


>CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative phosphate 
transporter.  PHM7_cyt is the predicted cytosolic domain 
of integral membrane proteins, such as yeast PHM7 and TM63A_HUMAN 
TRANSMEMBRANE PROTEIN 63A. This domain usually precedes 
the 7TM region, pfam02714, and follows a RSN1_TM, pfam13967. 
Fold recognition programs consistently and with high significance 
predict this domain to be distantly homologous to 
RNA binding proteins from the RRM clan.
Length=164

 Score = 127 bits (322),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 53/197 (27%), Positives = 87/197 (44%), Gaps = 46/197 (23%)

Query  295  SRTVLFMSVPEDYKNEQKLRQVF-----GDSIRRIWITSDCKELMKKVRERDSLAYRLEK  349
            SRTVL   +P+D ++E+KLR  F     G  + R+ I  D K+L K V ER+    +LE 
Sbjct  1    SRTVLVTGIPKDLRSEEKLRSFFEELYPGTVVERVQIVRDVKKLPKLVEEREKAVRKLEA  60

Query  350  AETNLIRTANSARLRAFKKGVITSDTCLDCESGTHSWRKKIRRPSHRVK---LFGPKVDS  406
            A    ++     +                            +RP+H++    LFG KVD+
Sbjct  61   ALAKYLKNGKKPK----------------------------KRPTHKLGFLGLFGKKVDA  92

Query  407  ICWLRDELVKVSKEVEYLQEQHKNGKMKNLSALFIEFNSQSDAQIALQTLSHHQPLHMTP  466
            I +  ++L ++ +E+E  +E+      K L A F+ F S+  A  A        P  M P
Sbjct  93   IDYYTEKLEELEEEIEEEREKVDK---KPLGAAFVTFKSERSAAAAAA---QINPQLMHP  146

Query  467  RFIGIS----PKEVVWS  479
            +   +     P++V+W 
Sbjct  147  KGWTVELAPEPRDVIWE  163



Lambda      K        H        a         alpha
   0.324    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 942938496


Query= TCONS_00043027

Length=958
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM re...  304     6e-97
CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with G...  145     1e-40
CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putat...  124     2e-34
CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative...  126     4e-34


>CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM region, putative 
phosphate.  RSN1_7TM is the seven transmembrane domain 
region of putative phosphate transporter. The family is the 
7TM region of osmosensitive calcium-permeable cation channels.
Length=273

 Score = 304 bits (781),  Expect = 6e-97, Method: Composition-based stats.
 Identities = 127/294 (43%), Positives = 174/294 (59%), Gaps = 21/294 (7%)

Query  509  RKFAVQGGIAALVIFWSIPSAAVGAISNITYLTSLLPFLGFIDKLPSSLKGVIAGLLPSA  568
            R+  V   I  L+IFW+IP A VG +SN+  LT + PFL +I +LP  L G++ GLLP  
Sbjct  1    RRLIVNLAIFLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILELPPKLLGLVTGLLPPL  60

Query  569  ALVLLMSFVPIICRCMSPRLKSNRNKRTLLTLVDSVLARRAGAPSTAHVELFTQSAHFCF  628
             L LLM+ +PII R                      L++  GAPS + +EL  QS +F F
Sbjct  61   LLSLLMALLPIILR---------------------FLSKLQGAPSRSDIELSVQSKYFAF  99

Query  629  QVVQVFLVTTLTSAASAATAQIIKNPLSAKDLLAQNLPKATNFYISYFLLQGLTMSSMAV  688
             VV VFLV TL S+AS+   QII NP S   LLA NLPKA+NF+I+Y LLQGL+ ++  +
Sbjct  100  LVVNVFLVFTLASSASSLIEQIIDNPTSIPTLLATNLPKASNFFITYILLQGLSGAAGEL  159

Query  689  VQVAGVLVFKFLSTFFDRSPRLLYRRWASLSGIGWGNVFPVFTNMGVIALTYSCIAPLIL  748
            +Q+  +++F     F D++PR  Y R+ +     +G V+PVF  +  I L YS IAPLIL
Sbjct  160  LQLGPLILFYIKRKFLDKTPRDKYERYTTPPSFDYGTVYPVFLLIFTIGLIYSVIAPLIL  219

Query  749  GFAFVGLYLVYQAYRYNFLFVYDIEIDTKGLVYPRALQHLLTGIYLANICMIGL  802
             F  V   L Y  Y+Y  L+VY  + ++ G  +PRAL  LL G+YL  +C+IGL
Sbjct  220  PFGLVYFGLGYFVYKYQLLYVYVTKYESGGRFWPRALNRLLVGLYLFQLCLIGL  273


>CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport. 
 This family represents the first three transmembrane 
regions of 11-TM proteins involved in vesicle transport. 
In S. cerevisiae these proteins are members of the yeast facilitator 
superfamily and are integral membrane proteins localized 
to the cell periphery, in particular to the bud-neck region. 
The distribution is consistent with a role in late exocytosis 
which is in agreement with the proteins' ability to 
substitute for the function of Sro7p, required for the sorting 
of the protein Enap1 into Golgi-derived vesicles destined 
for the cell surface.
Length=158

 Score = 145 bits (367),  Expect = 1e-40, Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 85/168 (51%), Gaps = 30/168 (18%)

Query  133  VIAFFWFGLFLVCRRTQLRWYAPRSHLPCWHQHERSPKLP-RGFINWFGQFLKISDAHVL  191
            VIA  +  LF + R    R YAPR++L    + ER+P LP  G   W    LKI D  +L
Sbjct  11   VIALVFLLLFSILRPKNKRVYAPRTYLA--PEEERTPPLPGTGLFGWIPPLLKIPDEEIL  68

Query  192  HSSSMDGYLFLRFLRVLCSTCFTGCLVTWPILIPIHVTGGAGN--------TQLDALS-F  242
              + +D Y+FLRFL++L      GCL+ WPIL+P++ TGG G         T LD LS  
Sbjct  69   QHAGLDAYVFLRFLKMLIKIFLVGCLIGWPILLPVNATGGNGEDDGDSLTRTGLDKLSSS  128

Query  243  SNVKDPTRYYAHAIMACIFFSMCFWGLFQAKSLIRDTAAYVFYVVTRE  290
            +NV+   R +AH ++A IF                    +V Y++ RE
Sbjct  129  NNVEGSNRLWAHVVVAYIFT------------------GFVLYLLYRE  158


>CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putative phosphate 
transporter.  This PHM7_ext family is found in plants 
and fungi. It represents the C-terminal extracellular domain 
of the putative phosphate transporter, PHM7. The three N-terminal 
TMS are found in family RSN1_TM, pfam02714; the cytoplssmic 
domain is pfam14703, and the remaining 7TM region is 
in pfam02714.
Length=84

 Score = 124 bits (314),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query  882  DYAALRRKVRRDH-VEIRYSEEEERNAYFEPCIRARTPTLWIPRDKWGFSHQEIIETHPS  940
             YAALR+ +  ++  E  Y EE  ++AY  P + ++ P LWIPRD  G S QEI ET   
Sbjct  1    SYAALRKLLPHEYNDEPEYDEELLKHAYLHPAVTSKPPILWIPRDPMGVSKQEIAETEKV  60

Query  941  IPITDEGAHLDEKNKFVW  958
            IPI+DEGA LDEK K VW
Sbjct  61   IPISDEGAWLDEKGKIVW  78


>CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative phosphate 
transporter.  PHM7_cyt is the predicted cytosolic domain 
of integral membrane proteins, such as yeast PHM7 and TM63A_HUMAN 
TRANSMEMBRANE PROTEIN 63A. This domain usually precedes 
the 7TM region, pfam02714, and follows a RSN1_TM, pfam13967. 
Fold recognition programs consistently and with high significance 
predict this domain to be distantly homologous to 
RNA binding proteins from the RRM clan.
Length=164

 Score = 126 bits (319),  Expect = 4e-34, Method: Composition-based stats.
 Identities = 53/197 (27%), Positives = 87/197 (44%), Gaps = 46/197 (23%)

Query  313  SRTVLFMSVPEDYKNEQKLRQVF-----GDSIRRIWITSDCKELMKKVRERDSLAYRLEK  367
            SRTVL   +P+D ++E+KLR  F     G  + R+ I  D K+L K V ER+    +LE 
Sbjct  1    SRTVLVTGIPKDLRSEEKLRSFFEELYPGTVVERVQIVRDVKKLPKLVEEREKAVRKLEA  60

Query  368  AETNLIRTANSARLRAFKKGVITSDTCLDCESGTHSWRKKIRRPSHRVK---LFGPKVDS  424
            A    ++     +                            +RP+H++    LFG KVD+
Sbjct  61   ALAKYLKNGKKPK----------------------------KRPTHKLGFLGLFGKKVDA  92

Query  425  ICWLRDELVKVSKEVEYLQEQHKNGKMKNLSALFIEFNSQSDAQIALQTLSHHQPLHMTP  484
            I +  ++L ++ +E+E  +E+      K L A F+ F S+  A  A        P  M P
Sbjct  93   IDYYTEKLEELEEEIEEEREKVDK---KPLGAAFVTFKSERSAAAAAA---QINPQLMHP  146

Query  485  RFIGIS----PKEVVWS  497
            +   +     P++V+W 
Sbjct  147  KGWTVELAPEPRDVIWE  163



Lambda      K        H        a         alpha
   0.325    0.137    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1220485112


Query= TCONS_00037359

Length=896
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM re...  316     4e-102
CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with G...  153     1e-43 
CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative...  126     3e-34 
CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putat...  84.5    2e-20 


>CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM region, putative 
phosphate.  RSN1_7TM is the seven transmembrane domain 
region of putative phosphate transporter. The family is the 
7TM region of osmosensitive calcium-permeable cation channels.
Length=273

 Score = 316 bits (813),  Expect = 4e-102, Method: Composition-based stats.
 Identities = 128/273 (47%), Positives = 175/273 (64%), Gaps = 0/273 (0%)

Query  491  RKFAVQGGIAALVIFWSIPSAAVGAISNITYLTSLLPFLGFIDKLPSSLKGVIAGLLPSA  550
            R+  V   I  L+IFW+IP A VG +SN+  LT + PFL +I +LP  L G++ GLLP  
Sbjct  1    RRLIVNLAIFLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILELPPKLLGLVTGLLPPL  60

Query  551  ALVLLMSFVPIICRFLARRAGAPSTAHVELFTQSAHFCFQVVQVFLVTTLTSAASAATAQ  610
             L LLM+ +PII RFL++  GAPS + +EL  QS +F F VV VFLV TL S+AS+   Q
Sbjct  61   LLSLLMALLPIILRFLSKLQGAPSRSDIELSVQSKYFAFLVVNVFLVFTLASSASSLIEQ  120

Query  611  IIKNPLSAKDLLAQNLPKATNFYISYFLLQGLTMSSMAVVQVAGVLVFKFLSTFFDRSPR  670
            II NP S   LLA NLPKA+NF+I+Y LLQGL+ ++  ++Q+  +++F     F D++PR
Sbjct  121  IIDNPTSIPTLLATNLPKASNFFITYILLQGLSGAAGELLQLGPLILFYIKRKFLDKTPR  180

Query  671  LLYRRWASLSGIGWGNVFPVFTNMGVIALTYSCIAPLILGFAFVGLYLVYQAYRYNFLFV  730
              Y R+ +     +G V+PVF  +  I L YS IAPLIL F  V   L Y  Y+Y  L+V
Sbjct  181  DKYERYTTPPSFDYGTVYPVFLLIFTIGLIYSVIAPLILPFGLVYFGLGYFVYKYQLLYV  240

Query  731  YDIEIDTKGLVYPRALQHLLTGIYLANICMIGL  763
            Y  + ++ G  +PRAL  LL G+YL  +C+IGL
Sbjct  241  YVTKYESGGRFWPRALNRLLVGLYLFQLCLIGL  273


>CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport. 
 This family represents the first three transmembrane 
regions of 11-TM proteins involved in vesicle transport. 
In S. cerevisiae these proteins are members of the yeast facilitator 
superfamily and are integral membrane proteins localized 
to the cell periphery, in particular to the bud-neck region. 
The distribution is consistent with a role in late exocytosis 
which is in agreement with the proteins' ability to 
substitute for the function of Sro7p, required for the sorting 
of the protein Enap1 into Golgi-derived vesicles destined 
for the cell surface.
Length=158

 Score = 153 bits (390),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 61/150 (41%), Positives = 85/150 (57%), Gaps = 12/150 (8%)

Query  133  VIAFFWFGLFLVCRRTQLRWYAPRSHLPCWHQHERSPKLP-RGFINWFGQFLKISDAHVL  191
            VIA  +  LF + R    R YAPR++L    + ER+P LP  G   W    LKI D  +L
Sbjct  11   VIALVFLLLFSILRPKNKRVYAPRTYLA--PEEERTPPLPGTGLFGWIPPLLKIPDEEIL  68

Query  192  HSSSMDGYLFLRFLRVLCSTCFTGCLVTWPILIPIHVTGGAGN--------TQLDALS-F  242
              + +D Y+FLRFL++L      GCL+ WPIL+P++ TGG G         T LD LS  
Sbjct  69   QHAGLDAYVFLRFLKMLIKIFLVGCLIGWPILLPVNATGGNGEDDGDSLTRTGLDKLSSS  128

Query  243  SNVKDPTRYYAHAIMACIFFTYVFYVVTRE  272
            +NV+   R +AH ++A IF  +V Y++ RE
Sbjct  129  NNVEGSNRLWAHVVVAYIFTGFVLYLLYRE  158


>CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative phosphate 
transporter.  PHM7_cyt is the predicted cytosolic domain 
of integral membrane proteins, such as yeast PHM7 and TM63A_HUMAN 
TRANSMEMBRANE PROTEIN 63A. This domain usually precedes 
the 7TM region, pfam02714, and follows a RSN1_TM, pfam13967. 
Fold recognition programs consistently and with high significance 
predict this domain to be distantly homologous to 
RNA binding proteins from the RRM clan.
Length=164

 Score = 126 bits (319),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 53/197 (27%), Positives = 87/197 (44%), Gaps = 46/197 (23%)

Query  295  SRTVLFMSVPEDYKNEQKLRQVF-----GDSIRRIWITSDCKELMKKVRERDSLAYRLEK  349
            SRTVL   +P+D ++E+KLR  F     G  + R+ I  D K+L K V ER+    +LE 
Sbjct  1    SRTVLVTGIPKDLRSEEKLRSFFEELYPGTVVERVQIVRDVKKLPKLVEEREKAVRKLEA  60

Query  350  AETNLIRTANSARLRAFKKGVITSDTCLDCESGTHSWRKKIRRPSHRVK---LFGPKVDS  406
            A    ++     +                            +RP+H++    LFG KVD+
Sbjct  61   ALAKYLKNGKKPK----------------------------KRPTHKLGFLGLFGKKVDA  92

Query  407  ICWLRDELVKVSKEVEYLQEQHKNGKMKNLSALFIEFNSQSDAQIALQTLSHHQPLHMTP  466
            I +  ++L ++ +E+E  +E+      K L A F+ F S+  A  A        P  M P
Sbjct  93   IDYYTEKLEELEEEIEEEREKVDK---KPLGAAFVTFKSERSAAAAAA---QINPQLMHP  146

Query  467  RFIGIS----PKEVVWS  479
            +   +     P++V+W 
Sbjct  147  KGWTVELAPEPRDVIWE  163


>CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putative phosphate 
transporter.  This PHM7_ext family is found in plants 
and fungi. It represents the C-terminal extracellular domain 
of the putative phosphate transporter, PHM7. The three N-terminal 
TMS are found in family RSN1_TM, pfam02714; the cytoplssmic 
domain is pfam14703, and the remaining 7TM region is 
in pfam02714.
Length=84

 Score = 84.5 bits (210),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 1/54 (2%)

Query  843  DYAALRRKVRRDH-VEIRYSEEEERNAYFEPCIRARTPTLWIPRDKWGFSHQEI  895
             YAALR+ +  ++  E  Y EE  ++AY  P + ++ P LWIPRD  G S QEI
Sbjct  1    SYAALRKLLPHEYNDEPEYDEELLKHAYLHPAVTSKPPILWIPRDPMGVSKQEI  54



Lambda      K        H        a         alpha
   0.325    0.138    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1149846714


Query= TCONS_00037360

Length=870
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM re...  299     1e-95
CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with G...  142     8e-40
CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putat...  126     5e-35
CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative...  125     1e-33


>CDD:460661 pfam02714, RSN1_7TM, Calcium-dependent channel, 7TM region, putative 
phosphate.  RSN1_7TM is the seven transmembrane domain 
region of putative phosphate transporter. The family is the 
7TM region of osmosensitive calcium-permeable cation channels.
Length=273

 Score = 299 bits (767),  Expect = 1e-95, Method: Composition-based stats.
 Identities = 127/294 (43%), Positives = 174/294 (59%), Gaps = 21/294 (7%)

Query  405  RKFAVQGGIAALVIFWSIPSAAVGAISNITYLTSLLPFLGFIDKLPSSLKGVIAGLLPSA  464
            R+  V   I  L+IFW+IP A VG +SN+  LT + PFL +I +LP  L G++ GLLP  
Sbjct  1    RRLIVNLAIFLLIIFWAIPVAFVGLLSNLETLTKVWPFLKWILELPPKLLGLVTGLLPPL  60

Query  465  ALVLLMSFVPIICRCMSPRLKSNRNKRTLLTLVDSVLARRAGAPSTAHVELFTQSAHFCF  524
             L LLM+ +PII R                      L++  GAPS + +EL  QS +F F
Sbjct  61   LLSLLMALLPIILR---------------------FLSKLQGAPSRSDIELSVQSKYFAF  99

Query  525  QVVQVFLVTTLTSAASAATAQIIKNPLSAKDLLAQNLPKATNFYISYFLLQGLTMSSMAV  584
             VV VFLV TL S+AS+   QII NP S   LLA NLPKA+NF+I+Y LLQGL+ ++  +
Sbjct  100  LVVNVFLVFTLASSASSLIEQIIDNPTSIPTLLATNLPKASNFFITYILLQGLSGAAGEL  159

Query  585  VQVAGVLVFKFLSTFFDRSPRLLYRRWASLSGIGWGNVFPVFTNMGVIALTYSCIAPLIL  644
            +Q+  +++F     F D++PR  Y R+ +     +G V+PVF  +  I L YS IAPLIL
Sbjct  160  LQLGPLILFYIKRKFLDKTPRDKYERYTTPPSFDYGTVYPVFLLIFTIGLIYSVIAPLIL  219

Query  645  GFAFVGLYLVYQAYRYNFLFVYDIEIDTKGLVYPRALQHLLTGIYLANICMIGL  698
             F  V   L Y  Y+Y  L+VY  + ++ G  +PRAL  LL G+YL  +C+IGL
Sbjct  220  PFGLVYFGLGYFVYKYQLLYVYVTKYESGGRFWPRALNRLLVGLYLFQLCLIGL  273


>CDD:433613 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi transport. 
 This family represents the first three transmembrane 
regions of 11-TM proteins involved in vesicle transport. 
In S. cerevisiae these proteins are members of the yeast facilitator 
superfamily and are integral membrane proteins localized 
to the cell periphery, in particular to the bud-neck region. 
The distribution is consistent with a role in late exocytosis 
which is in agreement with the proteins' ability to 
substitute for the function of Sro7p, required for the sorting 
of the protein Enap1 into Golgi-derived vesicles destined 
for the cell surface.
Length=158

 Score = 142 bits (361),  Expect = 8e-40, Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 85/168 (51%), Gaps = 30/168 (18%)

Query  29   VIAFFWFGLFLVCRRTQLRWYAPRSHLPCWHQHERSPKLP-RGFINWFGQFLKISDAHVL  87
            VIA  +  LF + R    R YAPR++L    + ER+P LP  G   W    LKI D  +L
Sbjct  11   VIALVFLLLFSILRPKNKRVYAPRTYLA--PEEERTPPLPGTGLFGWIPPLLKIPDEEIL  68

Query  88   HSSSMDGYLFLRFLRVLCSTCFTGCLVTWPILIPIHVTGGAGN--------TQLDALS-F  138
              + +D Y+FLRFL++L      GCL+ WPIL+P++ TGG G         T LD LS  
Sbjct  69   QHAGLDAYVFLRFLKMLIKIFLVGCLIGWPILLPVNATGGNGEDDGDSLTRTGLDKLSSS  128

Query  139  SNVKDPTRYYAHAIMACIFFSMCFWGLFQAKSLIRDTAAYVFYVVTRE  186
            +NV+   R +AH ++A IF                    +V Y++ RE
Sbjct  129  NNVEGSNRLWAHVVVAYIFT------------------GFVLYLLYRE  158


>CDD:432676 pfam12621, PHM7_ext, Extracellular tail, of 10TM putative phosphate 
transporter.  This PHM7_ext family is found in plants 
and fungi. It represents the C-terminal extracellular domain 
of the putative phosphate transporter, PHM7. The three N-terminal 
TMS are found in family RSN1_TM, pfam02714; the cytoplssmic 
domain is pfam14703, and the remaining 7TM region is 
in pfam02714.
Length=84

 Score = 126 bits (318),  Expect = 5e-35, Method: Composition-based stats.
 Identities = 40/79 (51%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query  778  DYAALRRKVRRDH-VEIRYSEEEERNAYFEPCIRARTPTLWIPRDKWGFSHQEIIETHPS  836
             YAALR+ +  ++  E  Y EE  ++AY  P + ++ P LWIPRD  G S QEI ET   
Sbjct  1    SYAALRKLLPHEYNDEPEYDEELLKHAYLHPAVTSKPPILWIPRDPMGVSKQEIAETEKV  60

Query  837  IPITDEGAHLDEKNKFVWD  855
            IPI+DEGA LDEK K VW 
Sbjct  61   IPISDEGAWLDEKGKIVWT  79


>CDD:464272 pfam14703, PHM7_cyt, Cytosolic domain of 10TM putative phosphate 
transporter.  PHM7_cyt is the predicted cytosolic domain 
of integral membrane proteins, such as yeast PHM7 and TM63A_HUMAN 
TRANSMEMBRANE PROTEIN 63A. This domain usually precedes 
the 7TM region, pfam02714, and follows a RSN1_TM, pfam13967. 
Fold recognition programs consistently and with high significance 
predict this domain to be distantly homologous to 
RNA binding proteins from the RRM clan.
Length=164

 Score = 125 bits (315),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 53/197 (27%), Positives = 87/197 (44%), Gaps = 46/197 (23%)

Query  209  SRTVLFMSVPEDYKNEQKLRQVF-----GDSIRRIWITSDCKELMKKVRERDSLAYRLEK  263
            SRTVL   +P+D ++E+KLR  F     G  + R+ I  D K+L K V ER+    +LE 
Sbjct  1    SRTVLVTGIPKDLRSEEKLRSFFEELYPGTVVERVQIVRDVKKLPKLVEEREKAVRKLEA  60

Query  264  AETNLIRTANSARLRAFKKGVITSDTCLDCESGTHSWRKKIRRPSHRVK---LFGPKVDS  320
            A    ++     +                            +RP+H++    LFG KVD+
Sbjct  61   ALAKYLKNGKKPK----------------------------KRPTHKLGFLGLFGKKVDA  92

Query  321  ICWLRDELVKVSKEVEYLQEQHKNGKMKNLSALFIEFNSQSDAQIALQTLSHHQPLHMTP  380
            I +  ++L ++ +E+E  +E+      K L A F+ F S+  A  A        P  M P
Sbjct  93   IDYYTEKLEELEEEIEEEREKVDK---KPLGAAFVTFKSERSAAAAAA---QINPQLMHP  146

Query  381  RFIGIS----PKEVVWS  393
            +   +     P++V+W 
Sbjct  147  KGWTVELAPEPRDVIWE  163



Lambda      K        H        a         alpha
   0.326    0.138    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0839    0.140     1.90     42.6     43.6 

Effective search space used: 1112523350


Query= TCONS_00037361

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461216 pfam04189, Gcd10p, Gcd10p family. eIF-3 is a multi-sub...  473     1e-166


>CDD:461216 pfam04189, Gcd10p, Gcd10p family.  eIF-3 is a multi-subunit complex 
that stimulates translation initiation in vitro at several 
different steps. This family corresponds to the gamma 
subunit if eIF3. The Yeast protein Gcd10p has also been shown 
to be part of a complex with the methyltransferase Gcd14p 
that is involved in modifying tRNA.
Length=295

 Score = 473 bits (1220),  Expect = 1e-166, Method: Composition-based stats.
 Identities = 182/358 (51%), Positives = 219/358 (61%), Gaps = 63/358 (18%)

Query  4    YIRPYQHVALRLPSELTKIVRLVPNTVVYLGKYGSFPANTIIGRPFYLTFEIIDVSGENN  63
             IRP QHV LRLPS   KIV+L PNT + LGK+GSFP N IIGRP+ LTFEI+D  GE +
Sbjct  1    VIRPNQHVILRLPSGNLKIVQLKPNTTISLGKFGSFPVNLIIGRPYGLTFEILDKRGEES  60

Query  64   DNCLRIVPPAELHAETLIADGEGEGDDVEVNEEGIPIRTNREIVDDASTQKMTAEEIEAL  123
             + LR+VP AELHAE+L      E  D E  E  +  R NR I+DD S QK+T EEIE L
Sbjct  61   FSKLRVVPAAELHAESLAE----EEADSEEGEGEVSSRDNRNIIDDGSRQKLTMEEIEEL  116

Query  124  KKVSTGAGREIIEKLLESHSALDQKTAFSLAKYTLRKRKKFLKRFTVLPVDVSLLTNYML  183
            KK    AG+EII KL+ESH+  DQKTAFS  KY  RK+KK+LKRFTVLP+DVSLL  Y L
Sbjct  117  KKQGASAGKEIIAKLIESHTTFDQKTAFSQEKYLKRKKKKYLKRFTVLPLDVSLLLEYYL  176

Query  184  EGKEAMKTMELRDESIGLIGCWGNVHHGGQSSFEGAVASKPNGRYLVIDETGGLVVAAMA  243
            E K+  K ++LR+E++GL+  W NVH G              GRYLV+DETGGL+VAAMA
Sbjct  177  EKKDPQKILDLREETLGLLLTWANVHPG--------------GRYLVVDETGGLLVAAMA  222

Query  244  ERMGILYPHDQEDEDQELAEGSEENGERQQTNAMAQALARRRHMAASGNSITVIHANKQP  303
            ERMG                                         A+  +ITVIH N+QP
Sbjct  223  ERMGG----------------------------------------ATTGTITVIHPNEQP  242

Query  304  SLSLLRYFGYDQDNPDESHPLYKHMKTVSWMQLLDPHADTIYANEPEVIPDETLATFK  361
            +LSLL+YF Y     D  HPL  H+KT+SW+QLL+P  DT Y  EP  IP+E LA  K
Sbjct  243  NLSLLKYFNY-----DPEHPLDTHLKTLSWLQLLEPEEDTTYEEEPTDIPEEELAELK  295



Lambda      K        H        a         alpha
   0.315    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00043028

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00037362

Length=476


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00043030

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00043029

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459627 pfam00004, AAA, ATPase family associated with various ...  74.2    3e-17


>CDD:459627 pfam00004, AAA, ATPase family associated with various cellular 
activities (AAA).  AAA family proteins often perform chaperone-like 
functions that assist in the assembly, operation, 
or disassembly of protein complexes.
Length=130

 Score = 74.2 bits (183),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 62/148 (42%), Gaps = 32/148 (22%)

Query  81   LLLYGPPGTGKTSTILALARRIYGSNNMRQMVLELNASDDRGIDVVREQIKTFASTKQIF  140
            LLLYGPPGTGKT+   A+A+ +          +E++ S+     V     ++    +++F
Sbjct  1    LLLYGPPGTGKTTLAKAVAKELGAP------FIEISGSELVSKYV----GESEKRLRELF  50

Query  141  SMAAPSASSGSSLASFKLIILDEADAMTST-----------AQMALRRIMERYTANTRFC  189
              A   A          +I +DE DA+  +               L   ++ +T++    
Sbjct  51   EAAKKLAP--------CVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKV  102

Query  190  II---ANYTHKLSPALLSRCTRFRFSPL  214
            I+    N   KL PALL R  R    PL
Sbjct  103  IVIAATNRPDKLDPALLGRFDRIIEFPL  130



Lambda      K        H        a         alpha
   0.318    0.131    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306328640


Query= TCONS_00037363

Length=154


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.133    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00043031

Length=169


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.130    0.348    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 150519248


Query= TCONS_00037365

Length=150


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.129    0.350    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00037364

Length=476


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00037366

Length=476


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00037367

Length=476


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 592009744


Query= TCONS_00043032

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  174     1e-52


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 174 bits (443),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 70/168 (42%), Positives = 93/168 (55%), Gaps = 26/168 (15%)

Query  20   TFGPIHIALFANQTPLTCKNFLQHCLDNYYAGTIFHRIVPDFIVQGGDPTGTGSGGTSIY  79
              G I I LF ++ P T +NFLQ C   +Y GT FHR++P F+VQGGDPTGTG GG SI+
Sbjct  5    GLGRIVIELFGDKAPKTVENFLQLCKKGFYDGTTFHRVIPGFMVQGGDPTGTGGGGKSIF  64

Query  80   EYPEFEYDPEARDPNEKVVLRDELHSRLRFNRRGLVGMAKSED--GTYGSQFFITLANAE  137
              P                  DE+   L  ++RG + MA +     + GSQFFITL  A 
Sbjct  65   PIP------------------DEIFPLLLKHKRGALSMANTGPAPNSNGSQFFITLGPAP  106

Query  138  RELNGQCTLFGRVEGDSIYNVL-KIAEAERVERTERPVYPVKVVSCEV  184
              L+G+ T+FG+V      +VL KI +       +RPV PVK++SC V
Sbjct  107  -HLDGKYTVFGKVV--EGMDVLEKIEKVPTDG--DRPVKPVKILSCGV  149



Lambda      K        H        a         alpha
   0.312    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 697897876


Query= TCONS_00037368

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-pr...  174     1e-52


>CDD:459694 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans 
isomerase/CLD.  The peptidyl-prolyl cis-trans isomerases, 
also known as cyclophilins, share this domain of about 
109 amino acids. Cyclophilins have been found in all organisms 
studied so far and catalyze peptidyl-prolyl isomerisation 
during which the peptide bond preceding proline (the peptidyl-prolyl 
bond) is stabilized in the cis conformation. Mammalian 
cyclophilin A (CypA) is a major cellular target for the 
immunosuppressive drug cyclosporin A (CsA). Other roles for 
cyclophilins may include chaperone and cell signalling function.
Length=149

 Score = 174 bits (443),  Expect = 1e-52, Method: Composition-based stats.
 Identities = 70/168 (42%), Positives = 93/168 (55%), Gaps = 26/168 (15%)

Query  20   TFGPIHIALFANQTPLTCKNFLQHCLDNYYAGTIFHRIVPDFIVQGGDPTGTGSGGTSIY  79
              G I I LF ++ P T +NFLQ C   +Y GT FHR++P F+VQGGDPTGTG GG SI+
Sbjct  5    GLGRIVIELFGDKAPKTVENFLQLCKKGFYDGTTFHRVIPGFMVQGGDPTGTGGGGKSIF  64

Query  80   EYPEFEYDPEARDPNEKVVLRDELHSRLRFNRRGLVGMAKSED--GTYGSQFFITLANAE  137
              P                  DE+   L  ++RG + MA +     + GSQFFITL  A 
Sbjct  65   PIP------------------DEIFPLLLKHKRGALSMANTGPAPNSNGSQFFITLGPAP  106

Query  138  RELNGQCTLFGRVEGDSIYNVL-KIAEAERVERTERPVYPVKVVSCEV  184
              L+G+ T+FG+V      +VL KI +       +RPV PVK++SC V
Sbjct  107  -HLDGKYTVFGKVV--EGMDVLEKIEKVPTDG--DRPVKPVKILSCGV  149



Lambda      K        H        a         alpha
   0.312    0.132    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 697897876


Query= TCONS_00037369

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.132    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00043033

Length=205


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.126    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 203882740


Query= TCONS_00037370

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00037371

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00037372

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00043034

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00037373

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00037374

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00037375

Length=322


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00037376

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460206 pfam01424, R3H, R3H domain. The name of the R3H domain...  56.3    6e-11


>CDD:460206 pfam01424, R3H, R3H domain.  The name of the R3H domain comes 
from the characteristic spacing of the most conserved arginine 
and histidine residues. The function of the domain is predicted 
to be binding ssDNA.
Length=60

 Score = 56.3 bits (137),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (47%), Gaps = 1/60 (2%)

Query  305  TLSYYSQLLLFKEDPSRDSVLFPPTLTPIQRRTVHTLAHNMGLGHASRGTGEQRQVQVFK  364
             L   ++ L      +  S+  PP ++  +RR +H LA   GL   S G    R+V V+K
Sbjct  2    FLEQLAEKLAEFVKDTGKSLELPP-MSSYERRIIHELAQKYGLESESEGEEPNRRVVVYK  60



Lambda      K        H        a         alpha
   0.312    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00037377

Length=131


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 96605892


Query= TCONS_00043035

Length=322


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.128    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 374265230


Query= TCONS_00037378

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460206 pfam01424, R3H, R3H domain. The name of the R3H domain...  56.3    6e-11


>CDD:460206 pfam01424, R3H, R3H domain.  The name of the R3H domain comes 
from the characteristic spacing of the most conserved arginine 
and histidine residues. The function of the domain is predicted 
to be binding ssDNA.
Length=60

 Score = 56.3 bits (137),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (47%), Gaps = 1/60 (2%)

Query  305  TLSYYSQLLLFKEDPSRDSVLFPPTLTPIQRRTVHTLAHNMGLGHASRGTGEQRQVQVFK  364
             L   ++ L      +  S+  PP ++  +RR +H LA   GL   S G    R+V V+K
Sbjct  2    FLEQLAEKLAEFVKDTGKSLELPP-MSSYERRIIHELAQKYGLESESEGEEPNRRVVVYK  60



Lambda      K        H        a         alpha
   0.312    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00043036

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460206 pfam01424, R3H, R3H domain. The name of the R3H domain...  56.3    6e-11


>CDD:460206 pfam01424, R3H, R3H domain.  The name of the R3H domain comes 
from the characteristic spacing of the most conserved arginine 
and histidine residues. The function of the domain is predicted 
to be binding ssDNA.
Length=60

 Score = 56.3 bits (137),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (47%), Gaps = 1/60 (2%)

Query  305  TLSYYSQLLLFKEDPSRDSVLFPPTLTPIQRRTVHTLAHNMGLGHASRGTGEQRQVQVFK  364
             L   ++ L      +  S+  PP ++  +RR +H LA   GL   S G    R+V V+K
Sbjct  2    FLEQLAEKLAEFVKDTGKSLELPP-MSSYERRIIHELAQKYGLESESEGEEPNRRVVVYK  60



Lambda      K        H        a         alpha
   0.312    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00043037

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460206 pfam01424, R3H, R3H domain. The name of the R3H domain...  56.3    6e-11


>CDD:460206 pfam01424, R3H, R3H domain.  The name of the R3H domain comes 
from the characteristic spacing of the most conserved arginine 
and histidine residues. The function of the domain is predicted 
to be binding ssDNA.
Length=60

 Score = 56.3 bits (137),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (47%), Gaps = 1/60 (2%)

Query  305  TLSYYSQLLLFKEDPSRDSVLFPPTLTPIQRRTVHTLAHNMGLGHASRGTGEQRQVQVFK  364
             L   ++ L      +  S+  PP ++  +RR +H LA   GL   S G    R+V V+K
Sbjct  2    FLEQLAEKLAEFVKDTGKSLELPP-MSSYERRIIHELAQKYGLESESEGEEPNRRVVVYK  60



Lambda      K        H        a         alpha
   0.312    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00037379

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460206 pfam01424, R3H, R3H domain. The name of the R3H domain...  56.3    6e-11


>CDD:460206 pfam01424, R3H, R3H domain.  The name of the R3H domain comes 
from the characteristic spacing of the most conserved arginine 
and histidine residues. The function of the domain is predicted 
to be binding ssDNA.
Length=60

 Score = 56.3 bits (137),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (47%), Gaps = 1/60 (2%)

Query  305  TLSYYSQLLLFKEDPSRDSVLFPPTLTPIQRRTVHTLAHNMGLGHASRGTGEQRQVQVFK  364
             L   ++ L      +  S+  PP ++  +RR +H LA   GL   S G    R+V V+K
Sbjct  2    FLEQLAEKLAEFVKDTGKSLELPP-MSSYERRIIHELAQKYGLESESEGEEPNRRVVVYK  60



Lambda      K        H        a         alpha
   0.312    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00037380

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460206 pfam01424, R3H, R3H domain. The name of the R3H domain...  56.3    5e-11


>CDD:460206 pfam01424, R3H, R3H domain.  The name of the R3H domain comes 
from the characteristic spacing of the most conserved arginine 
and histidine residues. The function of the domain is predicted 
to be binding ssDNA.
Length=60

 Score = 56.3 bits (137),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (47%), Gaps = 1/60 (2%)

Query  305  TLSYYSQLLLFKEDPSRDSVLFPPTLTPIQRRTVHTLAHNMGLGHASRGTGEQRQVQVFK  364
             L   ++ L      +  S+  PP ++  +RR +H LA   GL   S G    R+V V+K
Sbjct  2    FLEQLAEKLAEFVKDTGKSLELPP-MSSYERRIIHELAQKYGLESESEGEEPNRRVVVYK  60



Lambda      K        H        a         alpha
   0.312    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0768    0.140     1.90     42.6     43.6 

Effective search space used: 738247432


Query= TCONS_00043038

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460206 pfam01424, R3H, R3H domain. The name of the R3H domain...  56.3    6e-11


>CDD:460206 pfam01424, R3H, R3H domain.  The name of the R3H domain comes 
from the characteristic spacing of the most conserved arginine 
and histidine residues. The function of the domain is predicted 
to be binding ssDNA.
Length=60

 Score = 56.3 bits (137),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (47%), Gaps = 1/60 (2%)

Query  305  TLSYYSQLLLFKEDPSRDSVLFPPTLTPIQRRTVHTLAHNMGLGHASRGTGEQRQVQVFK  364
             L   ++ L      +  S+  PP ++  +RR +H LA   GL   S G    R+V V+K
Sbjct  2    FLEQLAEKLAEFVKDTGKSLELPP-MSSYERRIIHELAQKYGLESESEGEEPNRRVVVYK  60



Lambda      K        H        a         alpha
   0.312    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00037381

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460206 pfam01424, R3H, R3H domain. The name of the R3H domain...  56.3    5e-11


>CDD:460206 pfam01424, R3H, R3H domain.  The name of the R3H domain comes 
from the characteristic spacing of the most conserved arginine 
and histidine residues. The function of the domain is predicted 
to be binding ssDNA.
Length=60

 Score = 56.3 bits (137),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (47%), Gaps = 1/60 (2%)

Query  305  TLSYYSQLLLFKEDPSRDSVLFPPTLTPIQRRTVHTLAHNMGLGHASRGTGEQRQVQVFK  364
             L   ++ L      +  S+  PP ++  +RR +H LA   GL   S G    R+V V+K
Sbjct  2    FLEQLAEKLAEFVKDTGKSLELPP-MSSYERRIIHELAQKYGLESESEGEEPNRRVVVYK  60



Lambda      K        H        a         alpha
   0.312    0.129    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 738247432


Query= TCONS_00037382

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460206 pfam01424, R3H, R3H domain. The name of the R3H domain...  56.3    6e-11


>CDD:460206 pfam01424, R3H, R3H domain.  The name of the R3H domain comes 
from the characteristic spacing of the most conserved arginine 
and histidine residues. The function of the domain is predicted 
to be binding ssDNA.
Length=60

 Score = 56.3 bits (137),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (47%), Gaps = 1/60 (2%)

Query  305  TLSYYSQLLLFKEDPSRDSVLFPPTLTPIQRRTVHTLAHNMGLGHASRGTGEQRQVQVFK  364
             L   ++ L      +  S+  PP ++  +RR +H LA   GL   S G    R+V V+K
Sbjct  2    FLEQLAEKLAEFVKDTGKSLELPP-MSSYERRIIHELAQKYGLESESEGEEPNRRVVVYK  60



Lambda      K        H        a         alpha
   0.312    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00037383

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460206 pfam01424, R3H, R3H domain. The name of the R3H domain...  56.3    6e-11


>CDD:460206 pfam01424, R3H, R3H domain.  The name of the R3H domain comes 
from the characteristic spacing of the most conserved arginine 
and histidine residues. The function of the domain is predicted 
to be binding ssDNA.
Length=60

 Score = 56.3 bits (137),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (47%), Gaps = 1/60 (2%)

Query  305  TLSYYSQLLLFKEDPSRDSVLFPPTLTPIQRRTVHTLAHNMGLGHASRGTGEQRQVQVFK  364
             L   ++ L      +  S+  PP ++  +RR +H LA   GL   S G    R+V V+K
Sbjct  2    FLEQLAEKLAEFVKDTGKSLELPP-MSSYERRIIHELAQKYGLESESEGEEPNRRVVVYK  60



Lambda      K        H        a         alpha
   0.312    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00037384

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460206 pfam01424, R3H, R3H domain. The name of the R3H domain...  56.3    6e-11


>CDD:460206 pfam01424, R3H, R3H domain.  The name of the R3H domain comes 
from the characteristic spacing of the most conserved arginine 
and histidine residues. The function of the domain is predicted 
to be binding ssDNA.
Length=60

 Score = 56.3 bits (137),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (47%), Gaps = 1/60 (2%)

Query  305  TLSYYSQLLLFKEDPSRDSVLFPPTLTPIQRRTVHTLAHNMGLGHASRGTGEQRQVQVFK  364
             L   ++ L      +  S+  PP ++  +RR +H LA   GL   S G    R+V V+K
Sbjct  2    FLEQLAEKLAEFVKDTGKSLELPP-MSSYERRIIHELAQKYGLESESEGEEPNRRVVVYK  60



Lambda      K        H        a         alpha
   0.312    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00043039

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460206 pfam01424, R3H, R3H domain. The name of the R3H domain...  56.7    4e-11


>CDD:460206 pfam01424, R3H, R3H domain.  The name of the R3H domain comes 
from the characteristic spacing of the most conserved arginine 
and histidine residues. The function of the domain is predicted 
to be binding ssDNA.
Length=60

 Score = 56.7 bits (138),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (47%), Gaps = 1/60 (2%)

Query  264  TLSYYSQLLLFKEDPSRDSVLFPPTLTPIQRRTVHTLAHNMGLGHASRGTGEQRQVQVFK  323
             L   ++ L      +  S+  PP ++  +RR +H LA   GL   S G    R+V V+K
Sbjct  2    FLEQLAEKLAEFVKDTGKSLELPP-MSSYERRIIHELAQKYGLESESEGEEPNRRVVVYK  60



Lambda      K        H        a         alpha
   0.312    0.129    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 708358872


Query= TCONS_00037385

Length=186
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431002 pfam10032, Pho88, Phosphate transport (Pho88). Members...  297     4e-105


>CDD:431002 pfam10032, Pho88, Phosphate transport (Pho88).  Members of this 
family of proteins are involved in regulating inorganic phosphate 
transport, as well as telomere length regulation and 
maintenance.
Length=175

 Score = 297 bits (762),  Expect = 4e-105, Method: Composition-based stats.
 Identities = 114/173 (66%), Positives = 137/173 (79%), Gaps = 1/173 (1%)

Query  6    TNLAIILVMMQLAKKVPFDNPDVLFLVRCIYLASNVIILGLYMYTQSKINQKKDMTTLKY  65
            TNL I L MMQ++KK+ F++P+VLF VR  Y+ S +IILG+Y+Y +SKI +K D+TTLKY
Sbjct  1    TNLVISLGMMQVSKKIDFEDPEVLFYVRIAYVVSQLIILGVYLYIKSKIKKKNDLTTLKY  60

Query  66   VEPAPMGSGEEPRPVTTTNMDYDKGQLRQLMKSQLMGVGMMGVMHLYFKYTNPLLIQSII  125
            VEPA   S EE + VTTT  DYD  QL++L+KSQLMGV MM  MHLY KYTNPLLIQSI+
Sbjct  61   VEPASPMSQEEGKLVTTTVRDYDLAQLKKLIKSQLMGVAMMAFMHLYMKYTNPLLIQSIM  120

Query  126  PLKSALESNLVKIHVFGKPATGDLQRPFKAANSFLSQ-GQVKTDKASVENAEK  177
            PLK ALE+NLVKIH+FGKPATGDL+RPFKAA  F    G+ KTDK S+E AEK
Sbjct  121  PLKGALENNLVKIHLFGKPATGDLKRPFKAAAGFFGAAGEPKTDKKSIEAAEK  173



Lambda      K        H        a         alpha
   0.319    0.135    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00037386

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydro...  268     2e-91
CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  160     6e-50


>CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, 
C-terminal domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. C-terminal domain 
is a mixed alpha/antiparallel beta fold.
Length=158

 Score = 268 bits (687),  Expect = 2e-91, Method: Composition-based stats.
 Identities = 105/159 (66%), Positives = 122/159 (77%), Gaps = 1/159 (1%)

Query  157  LAPLAKVINDKFGIVEGLMTTVHSYTATQKVVDAPSNKDWRGGRTAAQNIIPSSTGAAKA  216
            LAPLAKV+ND FGI +GLMTTVH+YT  QK++D P +KD R GR AA NIIP+STGAAKA
Sbjct  1    LAPLAKVLNDNFGIKKGLMTTVHAYTNDQKLLDGPHHKDLRRGRAAAPNIIPTSTGAAKA  60

Query  217  VGKVIPSLNGKLTGMAMRVPTSNVSVVDLTCRLEKGASYDEIKQAIKAASEEGELKNILG  276
            VG V+P L GKL GMA+RVPT NVSVVDL   LEK  + +E+  A+K A+ EG LK IL 
Sbjct  61   VGLVLPELKGKLDGMAVRVPTPNVSVVDLVVELEKPVTVEEVNAALKEAA-EGALKGILS  119

Query  277  YTEDDVVSSDLNGDERSSIFDAKAGISLNPNFVKLVAWY  315
            YTED +VSSD  GD  SSIFDAK  I +N NFVK+VAWY
Sbjct  120  YTEDPLVSSDFIGDPHSSIFDAKETIVVNGNFVKVVAWY  158


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 160 bits (407),  Expect = 6e-50, Method: Composition-based stats.
 Identities = 56/101 (55%), Positives = 76/101 (75%), Gaps = 1/101 (1%)

Query  5    KVGINGFGRIGRIVFRNALSHGLVDVVAVNDPFIEVHYAAYMLKYDTTHGQFKGTIETYD  64
            KVGINGFGRIGR+V R AL    ++VVA+ND   +    AY+LKYD+ HG+F G +E  +
Sbjct  2    KVGINGFGRIGRLVLRAALERPDIEVVAIND-LTDPETLAYLLKYDSVHGRFPGEVEAEE  60

Query  65   QGLIVNGKKIRFYAEKDPSQIPWSETGAAYIVESTGVFTTK  105
             GL+VNGKKI+ +AE+DP+++PW + G   ++ESTGVFTTK
Sbjct  61   DGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTTK  101



Lambda      K        H        a         alpha
   0.315    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00037387

Length=173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431002 pfam10032, Pho88, Phosphate transport (Pho88). Members...  284     2e-100


>CDD:431002 pfam10032, Pho88, Phosphate transport (Pho88).  Members of this 
family of proteins are involved in regulating inorganic phosphate 
transport, as well as telomere length regulation and 
maintenance.
Length=175

 Score = 284 bits (730),  Expect = 2e-100, Method: Composition-based stats.
 Identities = 109/165 (66%), Positives = 132/165 (80%), Gaps = 1/165 (1%)

Query  1    MMQLAKKVPFDNPDVLFLVRCIYLASNVIILGLYMYTQSKINQKKDMTTLKYVEPAPMGS  60
            MMQ++KK+ F++P+VLF VR  Y+ S +IILG+Y+Y +SKI +K D+TTLKYVEPA   S
Sbjct  9    MMQVSKKIDFEDPEVLFYVRIAYVVSQLIILGVYLYIKSKIKKKNDLTTLKYVEPASPMS  68

Query  61   GEEPRPVTTTNMDYDKGQLRQLMKSQLMGVGMMGVMHLYFKYTNPLLIQSIIPLKSALES  120
             EE + VTTT  DYD  QL++L+KSQLMGV MM  MHLY KYTNPLLIQSI+PLK ALE+
Sbjct  69   QEEGKLVTTTVRDYDLAQLKKLIKSQLMGVAMMAFMHLYMKYTNPLLIQSIMPLKGALEN  128

Query  121  NLVKIHVFGKPATGDLQRPFKAANSFLSQ-GQVKTDKASVENAEK  164
            NLVKIH+FGKPATGDL+RPFKAA  F    G+ KTDK S+E AEK
Sbjct  129  NLVKIHLFGKPATGDLKRPFKAAAGFFGAAGEPKTDKKSIEAAEK  173



Lambda      K        H        a         alpha
   0.318    0.135    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 157361032


Query= TCONS_00037388

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydro...  269     2e-92
CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  101     1e-27


>CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, 
C-terminal domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. C-terminal domain 
is a mixed alpha/antiparallel beta fold.
Length=158

 Score = 269 bits (689),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 105/159 (66%), Positives = 122/159 (77%), Gaps = 1/159 (1%)

Query  112  LAPLAKVINDKFGIVEGLMTTVHSYTATQKVVDAPSNKDWRGGRTAAQNIIPSSTGAAKA  171
            LAPLAKV+ND FGI +GLMTTVH+YT  QK++D P +KD R GR AA NIIP+STGAAKA
Sbjct  1    LAPLAKVLNDNFGIKKGLMTTVHAYTNDQKLLDGPHHKDLRRGRAAAPNIIPTSTGAAKA  60

Query  172  VGKVIPSLNGKLTGMAMRVPTSNVSVVDLTCRLEKGASYDEIKQAIKAASEEGELKNILG  231
            VG V+P L GKL GMA+RVPT NVSVVDL   LEK  + +E+  A+K A+ EG LK IL 
Sbjct  61   VGLVLPELKGKLDGMAVRVPTPNVSVVDLVVELEKPVTVEEVNAALKEAA-EGALKGILS  119

Query  232  YTEDDVVSSDLNGDERSSIFDAKAGISLNPNFVKLVAWY  270
            YTED +VSSD  GD  SSIFDAK  I +N NFVK+VAWY
Sbjct  120  YTEDPLVSSDFIGDPHSSIFDAKETIVVNGNFVKVVAWY  158


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 101 bits (253),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 48/60 (80%), Gaps = 0/60 (0%)

Query  1    MLKYDTTHGQFKGTIETYDQGLIVNGKKIRFYAEKDPSQIPWSETGAAYIVESTGVFTTK  60
            +LKYD+ HG+F G +E  + GL+VNGKKI+ +AE+DP+++PW + G   ++ESTGVFTTK
Sbjct  42   LLKYDSVHGRFPGEVEAEEDGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTTK  101



Lambda      K        H        a         alpha
   0.313    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00037389

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydro...  269     9e-92
CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  159     9e-50


>CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, 
C-terminal domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. C-terminal domain 
is a mixed alpha/antiparallel beta fold.
Length=158

 Score = 269 bits (689),  Expect = 9e-92, Method: Composition-based stats.
 Identities = 105/159 (66%), Positives = 122/159 (77%), Gaps = 1/159 (1%)

Query  157  LAPLAKVINDKFGIVEGLMTTVHSYTATQKVVDAPSNKDWRGGRTAAQNIIPSSTGAAKA  216
            LAPLAKV+ND FGI +GLMTTVH+YT  QK++D P +KD R GR AA NIIP+STGAAKA
Sbjct  1    LAPLAKVLNDNFGIKKGLMTTVHAYTNDQKLLDGPHHKDLRRGRAAAPNIIPTSTGAAKA  60

Query  217  VGKVIPSLNGKLTGMAMRVPTSNVSVVDLTCRLEKGASYDEIKQAIKAASEEGELKNILG  276
            VG V+P L GKL GMA+RVPT NVSVVDL   LEK  + +E+  A+K A+ EG LK IL 
Sbjct  61   VGLVLPELKGKLDGMAVRVPTPNVSVVDLVVELEKPVTVEEVNAALKEAA-EGALKGILS  119

Query  277  YTEDDVVSSDLNGDERSSIFDAKAGISLNPNFVKLVAWY  315
            YTED +VSSD  GD  SSIFDAK  I +N NFVK+VAWY
Sbjct  120  YTEDPLVSSDFIGDPHSSIFDAKETIVVNGNFVKVVAWY  158


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 159 bits (406),  Expect = 9e-50, Method: Composition-based stats.
 Identities = 56/101 (55%), Positives = 76/101 (75%), Gaps = 1/101 (1%)

Query  5    KVGINGFGRIGRIVFRNALSHGLVDVVAVNDPFIEVHYAAYMLKYDTTHGQFKGTIETYD  64
            KVGINGFGRIGR+V R AL    ++VVA+ND   +    AY+LKYD+ HG+F G +E  +
Sbjct  2    KVGINGFGRIGRLVLRAALERPDIEVVAIND-LTDPETLAYLLKYDSVHGRFPGEVEAEE  60

Query  65   QGLIVNGKKIRFYAEKDPSQIPWSETGAAYIVESTGVFTTK  105
             GL+VNGKKI+ +AE+DP+++PW + G   ++ESTGVFTTK
Sbjct  61   DGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTTK  101



Lambda      K        H        a         alpha
   0.316    0.132    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00037391

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydro...  268     2e-91
CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  160     6e-50


>CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, 
C-terminal domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. C-terminal domain 
is a mixed alpha/antiparallel beta fold.
Length=158

 Score = 268 bits (687),  Expect = 2e-91, Method: Composition-based stats.
 Identities = 105/159 (66%), Positives = 122/159 (77%), Gaps = 1/159 (1%)

Query  157  LAPLAKVINDKFGIVEGLMTTVHSYTATQKVVDAPSNKDWRGGRTAAQNIIPSSTGAAKA  216
            LAPLAKV+ND FGI +GLMTTVH+YT  QK++D P +KD R GR AA NIIP+STGAAKA
Sbjct  1    LAPLAKVLNDNFGIKKGLMTTVHAYTNDQKLLDGPHHKDLRRGRAAAPNIIPTSTGAAKA  60

Query  217  VGKVIPSLNGKLTGMAMRVPTSNVSVVDLTCRLEKGASYDEIKQAIKAASEEGELKNILG  276
            VG V+P L GKL GMA+RVPT NVSVVDL   LEK  + +E+  A+K A+ EG LK IL 
Sbjct  61   VGLVLPELKGKLDGMAVRVPTPNVSVVDLVVELEKPVTVEEVNAALKEAA-EGALKGILS  119

Query  277  YTEDDVVSSDLNGDERSSIFDAKAGISLNPNFVKLVAWY  315
            YTED +VSSD  GD  SSIFDAK  I +N NFVK+VAWY
Sbjct  120  YTEDPLVSSDFIGDPHSSIFDAKETIVVNGNFVKVVAWY  158


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 160 bits (407),  Expect = 6e-50, Method: Composition-based stats.
 Identities = 56/101 (55%), Positives = 76/101 (75%), Gaps = 1/101 (1%)

Query  5    KVGINGFGRIGRIVFRNALSHGLVDVVAVNDPFIEVHYAAYMLKYDTTHGQFKGTIETYD  64
            KVGINGFGRIGR+V R AL    ++VVA+ND   +    AY+LKYD+ HG+F G +E  +
Sbjct  2    KVGINGFGRIGRLVLRAALERPDIEVVAIND-LTDPETLAYLLKYDSVHGRFPGEVEAEE  60

Query  65   QGLIVNGKKIRFYAEKDPSQIPWSETGAAYIVESTGVFTTK  105
             GL+VNGKKI+ +AE+DP+++PW + G   ++ESTGVFTTK
Sbjct  61   DGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTTK  101



Lambda      K        H        a         alpha
   0.315    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00037390

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydro...  268     2e-91
CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  160     6e-50


>CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, 
C-terminal domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. C-terminal domain 
is a mixed alpha/antiparallel beta fold.
Length=158

 Score = 268 bits (687),  Expect = 2e-91, Method: Composition-based stats.
 Identities = 105/159 (66%), Positives = 122/159 (77%), Gaps = 1/159 (1%)

Query  157  LAPLAKVINDKFGIVEGLMTTVHSYTATQKVVDAPSNKDWRGGRTAAQNIIPSSTGAAKA  216
            LAPLAKV+ND FGI +GLMTTVH+YT  QK++D P +KD R GR AA NIIP+STGAAKA
Sbjct  1    LAPLAKVLNDNFGIKKGLMTTVHAYTNDQKLLDGPHHKDLRRGRAAAPNIIPTSTGAAKA  60

Query  217  VGKVIPSLNGKLTGMAMRVPTSNVSVVDLTCRLEKGASYDEIKQAIKAASEEGELKNILG  276
            VG V+P L GKL GMA+RVPT NVSVVDL   LEK  + +E+  A+K A+ EG LK IL 
Sbjct  61   VGLVLPELKGKLDGMAVRVPTPNVSVVDLVVELEKPVTVEEVNAALKEAA-EGALKGILS  119

Query  277  YTEDDVVSSDLNGDERSSIFDAKAGISLNPNFVKLVAWY  315
            YTED +VSSD  GD  SSIFDAK  I +N NFVK+VAWY
Sbjct  120  YTEDPLVSSDFIGDPHSSIFDAKETIVVNGNFVKVVAWY  158


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 160 bits (407),  Expect = 6e-50, Method: Composition-based stats.
 Identities = 56/101 (55%), Positives = 76/101 (75%), Gaps = 1/101 (1%)

Query  5    KVGINGFGRIGRIVFRNALSHGLVDVVAVNDPFIEVHYAAYMLKYDTTHGQFKGTIETYD  64
            KVGINGFGRIGR+V R AL    ++VVA+ND   +    AY+LKYD+ HG+F G +E  +
Sbjct  2    KVGINGFGRIGRLVLRAALERPDIEVVAIND-LTDPETLAYLLKYDSVHGRFPGEVEAEE  60

Query  65   QGLIVNGKKIRFYAEKDPSQIPWSETGAAYIVESTGVFTTK  105
             GL+VNGKKI+ +AE+DP+++PW + G   ++ESTGVFTTK
Sbjct  61   DGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTTK  101



Lambda      K        H        a         alpha
   0.315    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00043040

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain. ...  276     9e-91


>CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain.  Histones 
can be reversibly acetylated on several lysine residues. 
Regulation of transcription is caused in part by this mechanism. 
Histone deacetylases catalyze the removal of the acetyl 
group. Histone deacetylases are related to other proteins.
Length=298

 Score = 276 bits (709),  Expect = 9e-91, Method: Composition-based stats.
 Identities = 98/234 (42%), Positives = 141/234 (60%), Gaps = 26/234 (11%)

Query  116  DSIYFNKLTFASSLLSVGGAIETCLAVATRKVKNAIAVIRPPGHHAEHDKTMGFCLFNNV  175
            D    +  ++ ++LL+ GG +    AV + + +NA A++RPPGHHAE D+  GFC+FNNV
Sbjct  69   DDTPVSPGSYEAALLAAGGTLAAADAVLSGEARNAFALVRPPGHHAERDRASGFCIFNNV  128

Query  176  SIAA----------RV---------CNGIQKAFYDDPNVLYISLHVYQDGKFYPGGDEGD  216
            +IAA          RV          NG Q+ FYDDP+VL +S+H Y  G FYPG   G 
Sbjct  129  AIAAKYLREKYGLKRVAIVDFDVHHGNGTQEIFYDDPSVLTLSIHQY-PGGFYPG--TGF  185

Query  217  WDHCGADAGIGKNVNIPWPSQGMGDGDYMYAFQQVVMPIAQEFNPDLVIVASGFDAAAGD  276
             D  G   G G  +N+P P  G GD +Y+ AF+++++P  +EF PDL++V++GFDA AGD
Sbjct  186  ADETGEGKGKGYTLNVPLP-PGTGDAEYLAAFEEILLPALEEFQPDLILVSAGFDAHAGD  244

Query  277  ELGGCFVTPSCYAHMTHMLMTLAH---GKVAVCLEGGYNFRSISKSALAVTKTL  327
             LGG  +T   +A +T +L+ LA     +V   LEGGYN  ++++SA AV   L
Sbjct  245  PLGGLNLTTEGFAEITRILLELADPLCIRVVSVLEGGYNLDALARSATAVLAAL  298



Lambda      K        H        a         alpha
   0.323    0.137    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00043041

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydro...  269     2e-92
CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  101     1e-27


>CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, 
C-terminal domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. C-terminal domain 
is a mixed alpha/antiparallel beta fold.
Length=158

 Score = 269 bits (689),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 105/159 (66%), Positives = 122/159 (77%), Gaps = 1/159 (1%)

Query  112  LAPLAKVINDKFGIVEGLMTTVHSYTATQKVVDAPSNKDWRGGRTAAQNIIPSSTGAAKA  171
            LAPLAKV+ND FGI +GLMTTVH+YT  QK++D P +KD R GR AA NIIP+STGAAKA
Sbjct  1    LAPLAKVLNDNFGIKKGLMTTVHAYTNDQKLLDGPHHKDLRRGRAAAPNIIPTSTGAAKA  60

Query  172  VGKVIPSLNGKLTGMAMRVPTSNVSVVDLTCRLEKGASYDEIKQAIKAASEEGELKNILG  231
            VG V+P L GKL GMA+RVPT NVSVVDL   LEK  + +E+  A+K A+ EG LK IL 
Sbjct  61   VGLVLPELKGKLDGMAVRVPTPNVSVVDLVVELEKPVTVEEVNAALKEAA-EGALKGILS  119

Query  232  YTEDDVVSSDLNGDERSSIFDAKAGISLNPNFVKLVAWY  270
            YTED +VSSD  GD  SSIFDAK  I +N NFVK+VAWY
Sbjct  120  YTEDPLVSSDFIGDPHSSIFDAKETIVVNGNFVKVVAWY  158


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 101 bits (253),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 48/60 (80%), Gaps = 0/60 (0%)

Query  1    MLKYDTTHGQFKGTIETYDQGLIVNGKKIRFYAEKDPSQIPWSETGAAYIVESTGVFTTK  60
            +LKYD+ HG+F G +E  + GL+VNGKKI+ +AE+DP+++PW + G   ++ESTGVFTTK
Sbjct  42   LLKYDSVHGRFPGEVEAEEDGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTTK  101



Lambda      K        H        a         alpha
   0.313    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00037392

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydro...  268     2e-91
CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  160     6e-50


>CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, 
C-terminal domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. C-terminal domain 
is a mixed alpha/antiparallel beta fold.
Length=158

 Score = 268 bits (687),  Expect = 2e-91, Method: Composition-based stats.
 Identities = 105/159 (66%), Positives = 122/159 (77%), Gaps = 1/159 (1%)

Query  157  LAPLAKVINDKFGIVEGLMTTVHSYTATQKVVDAPSNKDWRGGRTAAQNIIPSSTGAAKA  216
            LAPLAKV+ND FGI +GLMTTVH+YT  QK++D P +KD R GR AA NIIP+STGAAKA
Sbjct  1    LAPLAKVLNDNFGIKKGLMTTVHAYTNDQKLLDGPHHKDLRRGRAAAPNIIPTSTGAAKA  60

Query  217  VGKVIPSLNGKLTGMAMRVPTSNVSVVDLTCRLEKGASYDEIKQAIKAASEEGELKNILG  276
            VG V+P L GKL GMA+RVPT NVSVVDL   LEK  + +E+  A+K A+ EG LK IL 
Sbjct  61   VGLVLPELKGKLDGMAVRVPTPNVSVVDLVVELEKPVTVEEVNAALKEAA-EGALKGILS  119

Query  277  YTEDDVVSSDLNGDERSSIFDAKAGISLNPNFVKLVAWY  315
            YTED +VSSD  GD  SSIFDAK  I +N NFVK+VAWY
Sbjct  120  YTEDPLVSSDFIGDPHSSIFDAKETIVVNGNFVKVVAWY  158


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 160 bits (407),  Expect = 6e-50, Method: Composition-based stats.
 Identities = 56/101 (55%), Positives = 76/101 (75%), Gaps = 1/101 (1%)

Query  5    KVGINGFGRIGRIVFRNALSHGLVDVVAVNDPFIEVHYAAYMLKYDTTHGQFKGTIETYD  64
            KVGINGFGRIGR+V R AL    ++VVA+ND   +    AY+LKYD+ HG+F G +E  +
Sbjct  2    KVGINGFGRIGRLVLRAALERPDIEVVAIND-LTDPETLAYLLKYDSVHGRFPGEVEAEE  60

Query  65   QGLIVNGKKIRFYAEKDPSQIPWSETGAAYIVESTGVFTTK  105
             GL+VNGKKI+ +AE+DP+++PW + G   ++ESTGVFTTK
Sbjct  61   DGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTTK  101



Lambda      K        H        a         alpha
   0.315    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00037393

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydro...  269     2e-92
CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  101     1e-27


>CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, 
C-terminal domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. C-terminal domain 
is a mixed alpha/antiparallel beta fold.
Length=158

 Score = 269 bits (689),  Expect = 2e-92, Method: Composition-based stats.
 Identities = 105/159 (66%), Positives = 122/159 (77%), Gaps = 1/159 (1%)

Query  112  LAPLAKVINDKFGIVEGLMTTVHSYTATQKVVDAPSNKDWRGGRTAAQNIIPSSTGAAKA  171
            LAPLAKV+ND FGI +GLMTTVH+YT  QK++D P +KD R GR AA NIIP+STGAAKA
Sbjct  1    LAPLAKVLNDNFGIKKGLMTTVHAYTNDQKLLDGPHHKDLRRGRAAAPNIIPTSTGAAKA  60

Query  172  VGKVIPSLNGKLTGMAMRVPTSNVSVVDLTCRLEKGASYDEIKQAIKAASEEGELKNILG  231
            VG V+P L GKL GMA+RVPT NVSVVDL   LEK  + +E+  A+K A+ EG LK IL 
Sbjct  61   VGLVLPELKGKLDGMAVRVPTPNVSVVDLVVELEKPVTVEEVNAALKEAA-EGALKGILS  119

Query  232  YTEDDVVSSDLNGDERSSIFDAKAGISLNPNFVKLVAWY  270
            YTED +VSSD  GD  SSIFDAK  I +N NFVK+VAWY
Sbjct  120  YTEDPLVSSDFIGDPHSSIFDAKETIVVNGNFVKVVAWY  158


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 101 bits (253),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 48/60 (80%), Gaps = 0/60 (0%)

Query  1    MLKYDTTHGQFKGTIETYDQGLIVNGKKIRFYAEKDPSQIPWSETGAAYIVESTGVFTTK  60
            +LKYD+ HG+F G +E  + GL+VNGKKI+ +AE+DP+++PW + G   ++ESTGVFTTK
Sbjct  42   LLKYDSVHGRFPGEVEAEEDGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTTK  101



Lambda      K        H        a         alpha
   0.313    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 333736992


Query= TCONS_00037394

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydro...  247     1e-83
CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  160     2e-50


>CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, 
C-terminal domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. C-terminal domain 
is a mixed alpha/antiparallel beta fold.
Length=158

 Score = 247 bits (632),  Expect = 1e-83, Method: Composition-based stats.
 Identities = 96/146 (66%), Positives = 111/146 (76%), Gaps = 1/146 (1%)

Query  157  LAPLAKVINDKFGIVEGLMTTVHSYTATQKVVDAPSNKDWRGGRTAAQNIIPSSTGAAKA  216
            LAPLAKV+ND FGI +GLMTTVH+YT  QK++D P +KD R GR AA NIIP+STGAAKA
Sbjct  1    LAPLAKVLNDNFGIKKGLMTTVHAYTNDQKLLDGPHHKDLRRGRAAAPNIIPTSTGAAKA  60

Query  217  VGKVIPSLNGKLTGMAMRVPTSNVSVVDLTCRLEKGASYDEIKQAIKAASEEGELKNILG  276
            VG V+P L GKL GMA+RVPT NVSVVDL   LEK  + +E+  A+K A+ EG LK IL 
Sbjct  61   VGLVLPELKGKLDGMAVRVPTPNVSVVDLVVELEKPVTVEEVNAALKEAA-EGALKGILS  119

Query  277  YTEDDVVSSDLNGDERSSIFDAKAGI  302
            YTED +VSSD  GD  SSIFDAK  I
Sbjct  120  YTEDPLVSSDFIGDPHSSIFDAKETI  145


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 160 bits (408),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 56/101 (55%), Positives = 76/101 (75%), Gaps = 1/101 (1%)

Query  5    KVGINGFGRIGRIVFRNALSHGLVDVVAVNDPFIEVHYAAYMLKYDTTHGQFKGTIETYD  64
            KVGINGFGRIGR+V R AL    ++VVA+ND   +    AY+LKYD+ HG+F G +E  +
Sbjct  2    KVGINGFGRIGRLVLRAALERPDIEVVAIND-LTDPETLAYLLKYDSVHGRFPGEVEAEE  60

Query  65   QGLIVNGKKIRFYAEKDPSQIPWSETGAAYIVESTGVFTTK  105
             GL+VNGKKI+ +AE+DP+++PW + G   ++ESTGVFTTK
Sbjct  61   DGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTTK  101



Lambda      K        H        a         alpha
   0.314    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00043042

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydro...  268     2e-91
CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  160     6e-50


>CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, 
C-terminal domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. C-terminal domain 
is a mixed alpha/antiparallel beta fold.
Length=158

 Score = 268 bits (687),  Expect = 2e-91, Method: Composition-based stats.
 Identities = 105/159 (66%), Positives = 122/159 (77%), Gaps = 1/159 (1%)

Query  157  LAPLAKVINDKFGIVEGLMTTVHSYTATQKVVDAPSNKDWRGGRTAAQNIIPSSTGAAKA  216
            LAPLAKV+ND FGI +GLMTTVH+YT  QK++D P +KD R GR AA NIIP+STGAAKA
Sbjct  1    LAPLAKVLNDNFGIKKGLMTTVHAYTNDQKLLDGPHHKDLRRGRAAAPNIIPTSTGAAKA  60

Query  217  VGKVIPSLNGKLTGMAMRVPTSNVSVVDLTCRLEKGASYDEIKQAIKAASEEGELKNILG  276
            VG V+P L GKL GMA+RVPT NVSVVDL   LEK  + +E+  A+K A+ EG LK IL 
Sbjct  61   VGLVLPELKGKLDGMAVRVPTPNVSVVDLVVELEKPVTVEEVNAALKEAA-EGALKGILS  119

Query  277  YTEDDVVSSDLNGDERSSIFDAKAGISLNPNFVKLVAWY  315
            YTED +VSSD  GD  SSIFDAK  I +N NFVK+VAWY
Sbjct  120  YTEDPLVSSDFIGDPHSSIFDAKETIVVNGNFVKVVAWY  158


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 160 bits (407),  Expect = 6e-50, Method: Composition-based stats.
 Identities = 56/101 (55%), Positives = 76/101 (75%), Gaps = 1/101 (1%)

Query  5    KVGINGFGRIGRIVFRNALSHGLVDVVAVNDPFIEVHYAAYMLKYDTTHGQFKGTIETYD  64
            KVGINGFGRIGR+V R AL    ++VVA+ND   +    AY+LKYD+ HG+F G +E  +
Sbjct  2    KVGINGFGRIGRLVLRAALERPDIEVVAIND-LTDPETLAYLLKYDSVHGRFPGEVEAEE  60

Query  65   QGLIVNGKKIRFYAEKDPSQIPWSETGAAYIVESTGVFTTK  105
             GL+VNGKKI+ +AE+DP+++PW + G   ++ESTGVFTTK
Sbjct  61   DGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTTK  101



Lambda      K        H        a         alpha
   0.315    0.131    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00037395

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydro...  268     1e-91
CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydro...  147     4e-45


>CDD:460700 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, 
C-terminal domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. C-terminal domain 
is a mixed alpha/antiparallel beta fold.
Length=158

 Score = 268 bits (688),  Expect = 1e-91, Method: Composition-based stats.
 Identities = 105/159 (66%), Positives = 122/159 (77%), Gaps = 1/159 (1%)

Query  157  LAPLAKVINDKFGIVEGLMTTVHSYTATQKVVDAPSNKDWRGGRTAAQNIIPSSTGAAKA  216
            LAPLAKV+ND FGI +GLMTTVH+YT  QK++D P +KD R GR AA NIIP+STGAAKA
Sbjct  1    LAPLAKVLNDNFGIKKGLMTTVHAYTNDQKLLDGPHHKDLRRGRAAAPNIIPTSTGAAKA  60

Query  217  VGKVIPSLNGKLTGMAMRVPTSNVSVVDLTCRLEKGASYDEIKQAIKAASEEGELKNILG  276
            VG V+P L GKL GMA+RVPT NVSVVDL   LEK  + +E+  A+K A+ EG LK IL 
Sbjct  61   VGLVLPELKGKLDGMAVRVPTPNVSVVDLVVELEKPVTVEEVNAALKEAA-EGALKGILS  119

Query  277  YTEDDVVSSDLNGDERSSIFDAKAGISLNPNFVKLVAWY  315
            YTED +VSSD  GD  SSIFDAK  I +N NFVK+VAWY
Sbjct  120  YTEDPLVSSDFIGDPHSSIFDAKETIVVNGNFVKVVAWY  158


>CDD:459648 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, 
NAD binding domain.  GAPDH is a tetrameric NAD-binding enzyme 
involved in glycolysis and glyconeogenesis. N-terminal domain 
is a Rossmann NAD(P) binding fold.
Length=101

 Score = 147 bits (374),  Expect = 4e-45, Method: Composition-based stats.
 Identities = 53/101 (52%), Positives = 75/101 (74%), Gaps = 1/101 (1%)

Query  5    KVGINGFGRIGRIIGLNSLSHGLVDVVAVNDPFIEVHYAAYMLKYDTTHGQFKGTIETYD  64
            KVGINGFGRIGR++   +L    ++VVA+ND   +    AY+LKYD+ HG+F G +E  +
Sbjct  2    KVGINGFGRIGRLVLRAALERPDIEVVAIND-LTDPETLAYLLKYDSVHGRFPGEVEAEE  60

Query  65   QGLIVNGKKIRFYAEKDPSQIPWSETGAAYIVESTGVFTTK  105
             GL+VNGKKI+ +AE+DP+++PW + G   ++ESTGVFTTK
Sbjct  61   DGLVVNGKKIKVFAERDPAELPWGDLGVDVVIESTGVFTTK  101



Lambda      K        H        a         alpha
   0.315    0.131    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00037396

Length=764
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401634 pfam09757, Arb2, Arb2 domain. A second fission yeast A...  418     4e-143
CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain. ...  366     2e-122


>CDD:401634 pfam09757, Arb2, Arb2 domain.  A second fission yeast Argonaute 
complex (Argonaute siRNA chaperone, ARC) that contains two 
previously uncharacterized proteins, Arb1 and Arb2, both of 
which are required for histone H3 Lys9 (H3-K9) methylation, 
heterochromatin assembly and siRNA generation. This family 
includes a region found in Arb2 and the Hda1 protein.
Length=252

 Score = 418 bits (1077),  Expect = 4e-143, Method: Composition-based stats.
 Identities = 133/252 (53%), Positives = 174/252 (69%), Gaps = 4/252 (2%)

Query  513  LHDVIRAYQSKQLYDNFKLTSLYIYRTSISKSFENQVLASANYYQAVPLIVIFHDPPEIM  572
            LHDVIR YQ+KQL++ + +  L I R  +SKSFENQVLA+ N Y+A  L+VI HDPPE+ 
Sbjct  1    LHDVIRQYQAKQLFEKYGMVPLPIQRDKLSKSFENQVLATPNIYKARTLLVIVHDPPELW  60

Query  573  GLPHPVTNKLEAHNCWLADCMKNYIGWAVGKGYAVIDVNIPKHVTIEPTTGKYEDEDENR  632
              P P+TNKL+ HN WL D + +YI WAV +GY VIDVNIP+H+T  P +   ED++ NR
Sbjct  61   AQPDPITNKLDPHNSWLVDSVLDYIDWAVKQGYGVIDVNIPQHITETPES-LEEDDEYNR  119

Query  633  PSATEELAGYLWDNYIEPNE-ATEIFFIGIGNAFYGVANLLINRDTLYKRVNGVISFVAE  691
             S ++EL  YLWDNYIE  + AT+IFFIG+G+A+ G+ +LL +RD    RV GVI+FV  
Sbjct  120  ISESQELLLYLWDNYIELFDSATKIFFIGVGDAYSGIVHLLGHRDC-RSRVKGVINFVGG  178

Query  692  NPVRAIASHTQVWLSRWYKDNSLVFVSHTHGVWNNVETRRKPSKRYGHLIQSPKAGLSEM  751
            NP+R + S T   LS WY  NSLVFVS  H  W + E  +KP KRYG +++S   GL+ M
Sbjct  179  NPLRPVKSLTDESLSDWYFKNSLVFVSSDHSCWGDEEN-KKPRKRYGRVLRSDSDGLNNM  237

Query  752  LMHHKDEVFKWI  763
            L  H +EV  +I
Sbjct  238  LEEHFEEVTDFI  249


>CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain.  Histones 
can be reversibly acetylated on several lysine residues. 
Regulation of transcription is caused in part by this mechanism. 
Histone deacetylases catalyze the removal of the acetyl 
group. Histone deacetylases are related to other proteins.
Length=298

 Score = 366 bits (943),  Expect = 2e-122, Method: Composition-based stats.
 Identities = 130/315 (41%), Positives = 191/315 (61%), Gaps = 21/315 (7%)

Query  153  HPEDPRRIYYIYKELCRAGLVDDPESSRPLVARPLKRIHARNATEAEISLIHTPDHFAFV  212
            HPE+P R+  I + L  AGL+ D E            I  R ATE E+ L+H+P++  F+
Sbjct  1    HPENPERLKAILEALREAGLLPDLE-----------IIAPRPATEEELLLVHSPEYLEFL  49

Query  213  ESTKDMSDDE-LIALEHTRDSIYFNKLTFASSLLSVGGAIETCLAVATRKVKNAIAVIRP  271
            E          L++     D    +  ++ ++LL+ GG +    AV + + +NA A++RP
Sbjct  50   EEAAPEGGALLLLSYLSGDDDTPVSPGSYEAALLAAGGTLAAADAVLSGEARNAFALVRP  109

Query  272  PGHHAEHDKTMGFCLFNNVSIAARVCQNKLGESCRKILIVDWDVHHGNGIQKAFYDDPNV  331
            PGHHAE D+  GFC+FNNV+IAA+  + K G   +++ IVD+DVHHGNG Q+ FYDDP+V
Sbjct  110  PGHHAERDRASGFCIFNNVAIAAKYLREKYG--LKRVAIVDFDVHHGNGTQEIFYDDPSV  167

Query  332  LYISLHVYQDGKFYPGGDEGDWDHCGADAGIGKNVNIPWPSQGMGDGDYMYAFQQVVMPI  391
            L +S+H Y  G FYPG   G  D  G   G G  +N+P P  G GD +Y+ AF+++++P 
Sbjct  168  LTLSIHQY-PGGFYPG--TGFADETGEGKGKGYTLNVPLP-PGTGDAEYLAAFEEILLPA  223

Query  392  AQEFNPDLVIVASGFDAAAGDELGGCFVTPSCYAHMTHMLMTLAH---GKVAVCLEGGYN  448
             +EF PDL++V++GFDA AGD LGG  +T   +A +T +L+ LA     +V   LEGGYN
Sbjct  224  LEEFQPDLILVSAGFDAHAGDPLGGLNLTTEGFAEITRILLELADPLCIRVVSVLEGGYN  283

Query  449  FRSISKSALAVTKTL  463
              ++++SA AV   L
Sbjct  284  LDALARSATAVLAAL  298



Lambda      K        H        a         alpha
   0.318    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 974951840


Query= TCONS_00037397

Length=743
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401634 pfam09757, Arb2, Arb2 domain. A second fission yeast A...  419     9e-144
CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain. ...  322     2e-105


>CDD:401634 pfam09757, Arb2, Arb2 domain.  A second fission yeast Argonaute 
complex (Argonaute siRNA chaperone, ARC) that contains two 
previously uncharacterized proteins, Arb1 and Arb2, both of 
which are required for histone H3 Lys9 (H3-K9) methylation, 
heterochromatin assembly and siRNA generation. This family 
includes a region found in Arb2 and the Hda1 protein.
Length=252

 Score = 419 bits (1079),  Expect = 9e-144, Method: Composition-based stats.
 Identities = 133/252 (53%), Positives = 174/252 (69%), Gaps = 4/252 (2%)

Query  492  LHDVIRAYQSKQLYDNFKLTSLYIYRTSISKSFENQVLASANYYQAVPLIVIFHDPPEIM  551
            LHDVIR YQ+KQL++ + +  L I R  +SKSFENQVLA+ N Y+A  L+VI HDPPE+ 
Sbjct  1    LHDVIRQYQAKQLFEKYGMVPLPIQRDKLSKSFENQVLATPNIYKARTLLVIVHDPPELW  60

Query  552  GLPHPVTNKLEAHNCWLADCMKNYIGWAVGKGYAVIDVNIPKHVTIEPTTGKYEDEDENR  611
              P P+TNKL+ HN WL D + +YI WAV +GY VIDVNIP+H+T  P +   ED++ NR
Sbjct  61   AQPDPITNKLDPHNSWLVDSVLDYIDWAVKQGYGVIDVNIPQHITETPES-LEEDDEYNR  119

Query  612  PSATEELAGYLWDNYIEPNE-ATEIFFIGIGNAFYGVANLLINRDTLYKRVNGVISFVAE  670
             S ++EL  YLWDNYIE  + AT+IFFIG+G+A+ G+ +LL +RD    RV GVI+FV  
Sbjct  120  ISESQELLLYLWDNYIELFDSATKIFFIGVGDAYSGIVHLLGHRDC-RSRVKGVINFVGG  178

Query  671  NPVRAIASHTQVWLSRWYKDNSLVFVSHTHGVWNNVETRRKPSKRYGHLIQSPKAGLSEM  730
            NP+R + S T   LS WY  NSLVFVS  H  W + E  +KP KRYG +++S   GL+ M
Sbjct  179  NPLRPVKSLTDESLSDWYFKNSLVFVSSDHSCWGDEEN-KKPRKRYGRVLRSDSDGLNNM  237

Query  731  LMHHKDEVFKWI  742
            L  H +EV  +I
Sbjct  238  LEEHFEEVTDFI  249


>CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain.  Histones 
can be reversibly acetylated on several lysine residues. 
Regulation of transcription is caused in part by this mechanism. 
Histone deacetylases catalyze the removal of the acetyl 
group. Histone deacetylases are related to other proteins.
Length=298

 Score = 322 bits (828),  Expect = 2e-105, Method: Composition-based stats.
 Identities = 122/313 (39%), Positives = 177/313 (57%), Gaps = 38/313 (12%)

Query  153  HPEDPRRIYYIYKELCRAGLVDDPESSRPLVARPLKRIHARNATEAEISLIHTPDHFAFV  212
            HPE+P R+  I + L  AGL+ D E            I  R ATE E+ L+H+P++  F+
Sbjct  1    HPENPERLKAILEALREAGLLPDLE-----------IIAPRPATEEELLLVHSPEYLEFL  49

Query  213  ESTKDMSDDE-LIALEHTRDSIYFNKLTFASSLLSVGGAIETCLAVATRKVKNAIAVIRP  271
            E          L++     D    +  ++ ++LL+ GG +    AV + + +NA A++RP
Sbjct  50   EEAAPEGGALLLLSYLSGDDDTPVSPGSYEAALLAAGGTLAAADAVLSGEARNAFALVRP  109

Query  272  PGHHAEHDKTMGFCLFNNVSIAA----------RV---------CNGIQKAFYDDPNVLY  312
            PGHHAE D+  GFC+FNNV+IAA          RV          NG Q+ FYDDP+VL 
Sbjct  110  PGHHAERDRASGFCIFNNVAIAAKYLREKYGLKRVAIVDFDVHHGNGTQEIFYDDPSVLT  169

Query  313  ISLHVYQDGKFYPGGDEGDWDHCGADAGIGKNVNIPWPSQGMGDGDYMYAFQQVVMPIAQ  372
            +S+H Y  G FYPG   G  D  G   G G  +N+P P  G GD +Y+ AF+++++P  +
Sbjct  170  LSIHQY-PGGFYPG--TGFADETGEGKGKGYTLNVPLP-PGTGDAEYLAAFEEILLPALE  225

Query  373  EFNPDLVIVASGFDAAAGDELGGCFVTPSCYAHMTHMLMTLAH---GKVAVCLEGGYNFR  429
            EF PDL++V++GFDA AGD LGG  +T   +A +T +L+ LA     +V   LEGGYN  
Sbjct  226  EFQPDLILVSAGFDAHAGDPLGGLNLTTEGFAEITRILLELADPLCIRVVSVLEGGYNLD  285

Query  430  SISKSALAVTKTL  442
            ++++SA AV   L
Sbjct  286  ALARSATAVLAAL  298



Lambda      K        H        a         alpha
   0.318    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 944393648


Query= TCONS_00037398

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:401634 pfam09757, Arb2, Arb2 domain. A second fission yeast A...  406     1e-142
CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain. ...  194     2e-59 


>CDD:401634 pfam09757, Arb2, Arb2 domain.  A second fission yeast Argonaute 
complex (Argonaute siRNA chaperone, ARC) that contains two 
previously uncharacterized proteins, Arb1 and Arb2, both of 
which are required for histone H3 Lys9 (H3-K9) methylation, 
heterochromatin assembly and siRNA generation. This family 
includes a region found in Arb2 and the Hda1 protein.
Length=252

 Score = 406 bits (1046),  Expect = 1e-142, Method: Composition-based stats.
 Identities = 132/255 (52%), Positives = 172/255 (67%), Gaps = 9/255 (4%)

Query  200  LHDVIRAYQSKQLYDNFKLTSLYIYRTSISKSFENQVLASANYYQAVPLIVIFHDPPEIM  259
            LHDVIR YQ+KQL++ + +  L I R  +SKSFENQVLA+ N Y+A  L+VI HDPPE+ 
Sbjct  1    LHDVIRQYQAKQLFEKYGMVPLPIQRDKLSKSFENQVLATPNIYKARTLLVIVHDPPELW  60

Query  260  GLPHPVTNKLEAHNCWLN-----YIGWAVGKGYAVIDVNIPKHVTIEPTTGKYEDEDENR  314
              P P+TNKL+ HN WL      YI WAV +GY VIDVNIP+H+T  P +   ED++ NR
Sbjct  61   AQPDPITNKLDPHNSWLVDSVLDYIDWAVKQGYGVIDVNIPQHITETPES-LEEDDEYNR  119

Query  315  PSATEELAGYLWDNYIEPNE-ATEIFFIGIGNAFYGVANLLINRDTLYKRVNGVISFVAE  373
             S ++EL  YLWDNYIE  + AT+IFFIG+G+A+ G+ +LL +RD    RV GVI+FV  
Sbjct  120  ISESQELLLYLWDNYIELFDSATKIFFIGVGDAYSGIVHLLGHRDC-RSRVKGVINFVGG  178

Query  374  NPVRAIASHTQVWLSRWYKDNSLVFVSHTHGVWNNVETRRKPSKRYGHLIQSPKAGLSEM  433
            NP+R + S T   LS WY  NSLVFVS  H  W + E  +KP KRYG +++S   GL+ M
Sbjct  179  NPLRPVKSLTDESLSDWYFKNSLVFVSSDHSCWGDEEN-KKPRKRYGRVLRSDSDGLNNM  237

Query  434  LMHHKDEVFKWIEER  448
            L  H +EV  +I + 
Sbjct  238  LEEHFEEVTDFILDS  252


>CDD:425906 pfam00850, Hist_deacetyl, Histone deacetylase domain.  Histones 
can be reversibly acetylated on several lysine residues. 
Regulation of transcription is caused in part by this mechanism. 
Histone deacetylases catalyze the removal of the acetyl 
group. Histone deacetylases are related to other proteins.
Length=298

 Score = 194 bits (496),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 68/149 (46%), Positives = 96/149 (64%), Gaps = 7/149 (5%)

Query  5    GNGIQKAFYDDPNVLYISLHVYQDGKFYPGGDEGDWDHCGADAGIGKNVNIPWPSQGMGD  64
            GNG Q+ FYDDP+VL +S+H Y  G FYPG   G  D  G   G G  +N+P P  G GD
Sbjct  154  GNGTQEIFYDDPSVLTLSIHQY-PGGFYPG--TGFADETGEGKGKGYTLNVPLP-PGTGD  209

Query  65   GDYMYAFQQVVMPIAQEFNPDLVIVASGFDAAAGDELGGCFVTPSCYAHMTHMLMTLAH-  123
             +Y+ AF+++++P  +EF PDL++V++GFDA AGD LGG  +T   +A +T +L+ LA  
Sbjct  210  AEYLAAFEEILLPALEEFQPDLILVSAGFDAHAGDPLGGLNLTTEGFAEITRILLELADP  269

Query  124  --GKVAVCLEGGYNFRSISKSALAVTKTL  150
               +V   LEGGYN  ++++SA AV   L
Sbjct  270  LCIRVVSVLEGGYNLDALARSATAVLAAL  298



Lambda      K        H        a         alpha
   0.320    0.137    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0755    0.140     1.90     42.6     43.6 

Effective search space used: 555200848


Query= TCONS_00037399

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398923 pfam05544, Pro_racemase, Proline racemase. This family...  232     2e-74


>CDD:398923 pfam05544, Pro_racemase, Proline racemase.  This family consists 
of proline racemase (EC 5.1.1.4) proteins which catalyze 
the interconversion of L- and D-proline in bacteria. This family 
also contains several similar eukaryotic proteins including 
Trypanosoma cruzi PA45-A, a protein with B-cell mitogenic 
properties which has been characterized as a co-factor-independent 
proline racemase.
Length=325

 Score = 232 bits (595),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 106/368 (29%), Positives = 164/368 (45%), Gaps = 51/368 (14%)

Query  18   CIDMHTTGEPTRIIYSGFPPLSG-TLLEQRDQAKQHHDHIRKCLMLEPRGHNGMYGAIIR  76
             +D HT GEP R++  G PPL G T+ E+R    + HDH+R+ LM EPRGH+ M GA++ 
Sbjct  1    VVDSHTEGEPGRVVVGGVPPLPGATMAEKRRYFARDHDHLRRFLMFEPRGHDMMSGALLV  60

Query  77   PETELVSSGAAHIGVLFIHNEGFSTMCGHATIALGRFLVDTHDYSVFPRRQDLVFEVDTQ  136
            P         A  GV+F+   G+  MCGH TI +   L++T           +V      
Sbjct  61   PPKR----PDADAGVIFMEPSGYLPMCGHNTIGVVTVLLET----------GIV-PPQEP  105

Query  137  TVKLDIHAPCGVVRVTVPVTADGRKSDPSRPVTFLSTPAFATRIQMTVPVAPEIRWPELR  196
              +L++  P G+V           K +    V+  + P+F   + + V V      P L 
Sbjct  106  ETRLNLETPAGLVEAR--AECRDGKVE---RVSLRNVPSFVYALDVEVEV------PGL-  153

Query  197  DRDSIVLDISYGGAFYAIVQASELGFSGGLRDLDLDAMTRCIQKLKPCLMGLAEVQAAVQ  256
                + +DI+YGG FYAIV A +LGF     D++  A  R +      +      Q  V 
Sbjct  154  --GRVRVDIAYGGNFYAIVDAEQLGF-----DIE-PAEARELVAAGEKIRDALNEQLKVV  205

Query  257  HPHDQRLAFLYSVMIVDDTLGFQPDDVQGAETGLCYFAENQIDRSPTGSCVIARMALAYA  316
            HP +  +  +  V +        P   +             IDRSP G+   ARMA  +A
Sbjct  206  HPENPDIRGVSHVQLTGP-----PTRAEAHARNAVIIGPGAIDRSPCGTGTSARMAQLHA  260

Query  317  KGLRSLGQRWAYNSLVSNRFGTGAFSAEIVEEVTIDKVDGGCLNAVVVQVEGQAFYTGAS  376
            KG   +G+ + + S++ + F  G    E        +V G    A+V  + G+A+ TG +
Sbjct  261  KGKLKVGETFVHESIIGSEF-EGRVEGE-------TEVGGR--PAIVPSISGRAWITGTN  310

Query  377  VFAVEHED  384
               ++  D
Sbjct  311  QLLLDPSD  318



Lambda      K        H        a         alpha
   0.322    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00037400

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398923 pfam05544, Pro_racemase, Proline racemase. This family...  232     2e-74


>CDD:398923 pfam05544, Pro_racemase, Proline racemase.  This family consists 
of proline racemase (EC 5.1.1.4) proteins which catalyze 
the interconversion of L- and D-proline in bacteria. This family 
also contains several similar eukaryotic proteins including 
Trypanosoma cruzi PA45-A, a protein with B-cell mitogenic 
properties which has been characterized as a co-factor-independent 
proline racemase.
Length=325

 Score = 232 bits (595),  Expect = 2e-74, Method: Composition-based stats.
 Identities = 106/368 (29%), Positives = 164/368 (45%), Gaps = 51/368 (14%)

Query  18   CIDMHTTGEPTRIIYSGFPPLSG-TLLEQRDQAKQHHDHIRKCLMLEPRGHNGMYGAIIR  76
             +D HT GEP R++  G PPL G T+ E+R    + HDH+R+ LM EPRGH+ M GA++ 
Sbjct  1    VVDSHTEGEPGRVVVGGVPPLPGATMAEKRRYFARDHDHLRRFLMFEPRGHDMMSGALLV  60

Query  77   PETELVSSGAAHIGVLFIHNEGFSTMCGHATIALGRFLVDTHDYSVFPRRQDLVFEVDTQ  136
            P         A  GV+F+   G+  MCGH TI +   L++T           +V      
Sbjct  61   PPKR----PDADAGVIFMEPSGYLPMCGHNTIGVVTVLLET----------GIV-PPQEP  105

Query  137  TVKLDIHAPCGVVRVTVPVTADGRKSDPSRPVTFLSTPAFATRIQMTVPVAPEIRWPELR  196
              +L++  P G+V           K +    V+  + P+F   + + V V      P L 
Sbjct  106  ETRLNLETPAGLVEAR--AECRDGKVE---RVSLRNVPSFVYALDVEVEV------PGL-  153

Query  197  DRDSIVLDISYGGAFYAIVQASELGFSGGLRDLDLDAMTRCIQKLKPCLMGLAEVQAAVQ  256
                + +DI+YGG FYAIV A +LGF     D++  A  R +      +      Q  V 
Sbjct  154  --GRVRVDIAYGGNFYAIVDAEQLGF-----DIE-PAEARELVAAGEKIRDALNEQLKVV  205

Query  257  HPHDQRLAFLYSVMIVDDTLGFQPDDVQGAETGLCYFAENQIDRSPTGSCVIARMALAYA  316
            HP +  +  +  V +        P   +             IDRSP G+   ARMA  +A
Sbjct  206  HPENPDIRGVSHVQLTGP-----PTRAEAHARNAVIIGPGAIDRSPCGTGTSARMAQLHA  260

Query  317  KGLRSLGQRWAYNSLVSNRFGTGAFSAEIVEEVTIDKVDGGCLNAVVVQVEGQAFYTGAS  376
            KG   +G+ + + S++ + F  G    E        +V G    A+V  + G+A+ TG +
Sbjct  261  KGKLKVGETFVHESIIGSEF-EGRVEGE-------TEVGGR--PAIVPSISGRAWITGTN  310

Query  377  VFAVEHED  384
               ++  D
Sbjct  311  QLLLDPSD  318



Lambda      K        H        a         alpha
   0.322    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 484642704


Query= TCONS_00037401

Length=1197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465051 pfam16187, Peptidase_M16_M, Middle or third domain of ...  411     2e-135
CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive dom...  110     4e-28 
CDD:425812 pfam00675, Peptidase_M16, Insulinase (Peptidase family...  107     1e-27 


>CDD:465051 pfam16187, Peptidase_M16_M, Middle or third domain of peptidase_M16. 
 Peptidase_M16_M is the third domain of peptidase_M16 
in eukaryotes of the insulin-degrading-enzyme type. Insulin-degrading 
enzymes - insulysin - are zinc metallopeptidases 
that metabolize several bioactive peptides, including insulin 
and the amyloid-beta-peptide. The tertiary structure of insulin-degrading 
enzymes resembles a clamshell composed of four 
structurally similar domains arranged to enclose a large 
central chamber. Substrates must enter the chamber, and it 
is likely that a hinge-like conformational change allows substrate 
binding and product release. Triphosphates are found 
to dock between the inner surfaces of the non-catalytic domains 
three and four.
Length=284

 Score = 411 bits (1058),  Expect = 2e-135, Method: Composition-based stats.
 Identities = 148/290 (51%), Positives = 201/290 (69%), Gaps = 7/290 (2%)

Query  502  FRFKQKSPASRFTSRLSSVMQKPLPREWLLSG-SLLRKFDPDLIKKALSYLRPDNFRLIV  560
            FRF++KSP S + S L+S MQ P P E +LSG  LLR++DP+LI++ L YL P+N R+ +
Sbjct  1    FRFQEKSPPSDYVSSLASNMQ-PYPPEDILSGDYLLREYDPELIQELLDYLTPENARITL  59

Query  561  VSQEYPGDWDSKEKWYGTEYKVGKIPEDFMADIREALDTTPETRLSDLHMPHKNEFVPTR  620
            VS+E+ G+ D KE WYGTEY V  IPE+ +   + A +  PE     LH+P  N F+PT 
Sbjct  60   VSKEFEGETDQKEPWYGTEYSVEPIPEELLKKWKNAPEPNPE-----LHLPEPNPFIPTD  114

Query  621  LSVEKKEVSEPAKTPKLIRHDDHVRLWFKKDDRFWVPKGTVHITLRNPLAWATPANLVKS  680
              ++KKEV EPAK P LIR     RLW+KKDD FWVPK  ++++LR+PLA+++P N V +
Sbjct  115  FDLKKKEVKEPAKYPVLIRDTPLSRLWYKKDDTFWVPKANIYLSLRSPLAYSSPRNAVLT  174

Query  681  KLYCELVKDALVEYSYDAELAGLDYHLSASVFGLDVSVGGYNDKMAVLLEKVFTSMRDLV  740
            +LY EL+KD+L EY+YDAELAGL Y LSA+  GL +SV GYNDK+ VLLEK+   +RD  
Sbjct  175  RLYVELLKDSLNEYAYDAELAGLSYSLSATERGLTLSVSGYNDKLPVLLEKILEKLRDFE  234

Query  741  VNPNRFHIIKERLSRGYRNAEYQQPFYQVGDYTRYLTSEKTWINEQYAAE  790
            ++P+RF IIKE+L R Y+N   +QP+ Q  DY  YL  E++W  E+    
Sbjct  235  IDPDRFEIIKEQLLRSYKNFALEQPYQQAFDYLLYLLEERSWTPEEKLEA  284


>CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.  Peptidase 
M16 consists of two structurally related domains. One 
is the active peptidase, whereas the other is inactive. The 
two domains hold the substrate like a clamp.
Length=181

 Score = 110 bits (276),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 6/182 (3%)

Query  317  RSEFIKFYQKHYSANRMKLCVLGRESLDELEKWVEELFSEVENKDLPQNRWDDVQPWRHE  376
            R +   FY+KHYS + M L ++G    +EL    E+ F ++      + R   ++P + +
Sbjct  4    REDLRDFYKKHYSPDNMVLVIVGDVDHEELLDLAEKYFGDLPASPKGKPRPPPLEPAKLK  63

Query  377  DLGIQIFAKPVMDTRSLDIYFPFLDEETLYESQPSRYISHLIGHEGPGSILAYIKAK-GW  435
                 +  K       L + FP        +S     ++ L+G      +   ++ K G 
Sbjct  64   -GREVVVPKKDEPQAHLALAFPGPPLNNDEDSLALDVLNELLGGGMSSRLFQELREKEGL  122

Query  436  ANGLSAGVMPICPGAAAFTISIRLTKEGLQQYREVAKVVFQYIAMLKEREPQQWVFDEMK  495
            A  +S+        +  F I   +  E      EV +++ + +  L +    +   +  K
Sbjct  123  AYSVSSFNDSY-SDSGLFGIYATVDPE---NVDEVIELILEELEKLAQEGVTEEELERAK  178

Query  496  NM  497
            N 
Sbjct  179  NQ  180


>CDD:425812 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16). 
 
Length=149

 Score = 107 bits (270),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 78/189 (41%), Gaps = 54/189 (29%)

Query  113  LLVHDPETDKASASVNVNVGNFSDADDMPGMAHAVEHLLFMGTKKFPKENAYNQYLASHS  172
                DP  D ++  + ++ G+  + D+  G+AH +EH+ F GTKK+P  N   + L    
Sbjct  3    ASESDPPADTSTVGLWIDAGSRYEPDNNNGLAHFLEHMAFKGTKKYP-SNELEEELEKLG  61

Query  173  GSSNAYTAATETNYFFEVSATADSGDGQPNGQSLTNGTTNGTTNGTTNGAYAFAESDTSE  232
            GS NA+T+   T Y+ EV                                          
Sbjct  62   GSLNAFTSRENTVYYAEVLNDD--------------------------------------  83

Query  233  PSSPLYGALDRFAQFFVSPLFLESTLDR-------ELRAVDSENKK----NLQSDLWRLM  281
                L  A+DR A FF +PLF ES ++R       E+ AVDSE +     NL +  +R  
Sbjct  84   ----LPKAVDRLADFFRNPLFTESEIERERLVVLYEVEAVDSEPQLVVLENLHAAAYRNT  139

Query  282  QLNKSLSNP  290
             L +SL  P
Sbjct  140  PLGRSLLGP  148



Lambda      K        H        a         alpha
   0.317    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1535861800


Query= TCONS_00037402

Length=1197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465051 pfam16187, Peptidase_M16_M, Middle or third domain of ...  411     2e-135
CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive dom...  110     4e-28 
CDD:425812 pfam00675, Peptidase_M16, Insulinase (Peptidase family...  107     3e-27 


>CDD:465051 pfam16187, Peptidase_M16_M, Middle or third domain of peptidase_M16. 
 Peptidase_M16_M is the third domain of peptidase_M16 
in eukaryotes of the insulin-degrading-enzyme type. Insulin-degrading 
enzymes - insulysin - are zinc metallopeptidases 
that metabolize several bioactive peptides, including insulin 
and the amyloid-beta-peptide. The tertiary structure of insulin-degrading 
enzymes resembles a clamshell composed of four 
structurally similar domains arranged to enclose a large 
central chamber. Substrates must enter the chamber, and it 
is likely that a hinge-like conformational change allows substrate 
binding and product release. Triphosphates are found 
to dock between the inner surfaces of the non-catalytic domains 
three and four.
Length=284

 Score = 411 bits (1059),  Expect = 2e-135, Method: Composition-based stats.
 Identities = 148/290 (51%), Positives = 201/290 (69%), Gaps = 7/290 (2%)

Query  502  FRFKQKSPASRFTSRLSSVMQKPLPREWLLSG-SLLRKFDPDLIKKALSYLRPDNFRLIV  560
            FRF++KSP S + S L+S MQ P P E +LSG  LLR++DP+LI++ L YL P+N R+ +
Sbjct  1    FRFQEKSPPSDYVSSLASNMQ-PYPPEDILSGDYLLREYDPELIQELLDYLTPENARITL  59

Query  561  VSQEYPGDWDSKEKWYGTEYKVGKIPEDFMADIREALDTTPETRLSDLHMPHKNEFVPTR  620
            VS+E+ G+ D KE WYGTEY V  IPE+ +   + A +  PE     LH+P  N F+PT 
Sbjct  60   VSKEFEGETDQKEPWYGTEYSVEPIPEELLKKWKNAPEPNPE-----LHLPEPNPFIPTD  114

Query  621  LSVEKKEVSEPAKTPKLIRHDDHVRLWFKKDDRFWVPKGTVHITLRNPLAWATPANLVKS  680
              ++KKEV EPAK P LIR     RLW+KKDD FWVPK  ++++LR+PLA+++P N V +
Sbjct  115  FDLKKKEVKEPAKYPVLIRDTPLSRLWYKKDDTFWVPKANIYLSLRSPLAYSSPRNAVLT  174

Query  681  KLYCELVKDALVEYSYDAELAGLDYHLSASVFGLDVSVGGYNDKMAVLLEKVFTSMRDLV  740
            +LY EL+KD+L EY+YDAELAGL Y LSA+  GL +SV GYNDK+ VLLEK+   +RD  
Sbjct  175  RLYVELLKDSLNEYAYDAELAGLSYSLSATERGLTLSVSGYNDKLPVLLEKILEKLRDFE  234

Query  741  VNPNRFHIIKERLSRGYRNAEYQQPFYQVGDYTRYLTSEKTWINEQYAAE  790
            ++P+RF IIKE+L R Y+N   +QP+ Q  DY  YL  E++W  E+    
Sbjct  235  IDPDRFEIIKEQLLRSYKNFALEQPYQQAFDYLLYLLEERSWTPEEKLEA  284


>CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.  Peptidase 
M16 consists of two structurally related domains. One 
is the active peptidase, whereas the other is inactive. The 
two domains hold the substrate like a clamp.
Length=181

 Score = 110 bits (276),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 6/182 (3%)

Query  317  RSEFIKFYQKHYSANRMKLCVLGRESLDELEKWVEELFSEVENKDLPQNRWDDVQPWRHE  376
            R +   FY+KHYS + M L ++G    +EL    E+ F ++      + R   ++P + +
Sbjct  4    REDLRDFYKKHYSPDNMVLVIVGDVDHEELLDLAEKYFGDLPASPKGKPRPPPLEPAKLK  63

Query  377  DLGIQIFAKPVMDTRSLDIYFPFLDEETLYESQPSRYISHLIGHEGPGSILAYIKAK-GW  435
                 +  K       L + FP        +S     ++ L+G      +   ++ K G 
Sbjct  64   -GREVVVPKKDEPQAHLALAFPGPPLNNDEDSLALDVLNELLGGGMSSRLFQELREKEGL  122

Query  436  ANGLSAGVMPICPGAAAFTISIRLTKEGLQQYREVAKVVFQYIAMLKEREPQQWVFDEMK  495
            A  +S+        +  F I   +  E      EV +++ + +  L +    +   +  K
Sbjct  123  AYSVSSFNDSY-SDSGLFGIYATVDPE---NVDEVIELILEELEKLAQEGVTEEELERAK  178

Query  496  NM  497
            N 
Sbjct  179  NQ  180


>CDD:425812 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16). 
 
Length=149

 Score = 107 bits (268),  Expect = 3e-27, Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 77/189 (41%), Gaps = 54/189 (29%)

Query  113  LLVHDPETDKASASVNVNVGNFSDADDMPGMAHAVEHLLFMGTKKVPKENAYNQYLASHS  172
                DP  D ++  + ++ G+  + D+  G+AH +EH+ F GTKK P  N   + L    
Sbjct  3    ASESDPPADTSTVGLWIDAGSRYEPDNNNGLAHFLEHMAFKGTKKYP-SNELEEELEKLG  61

Query  173  GSSNAYTAATETNYFFEVSATADSGDGQPNGQSLTNGTTNGTTNGTTNGAYAFAESDTSE  232
            GS NA+T+   T Y+ EV                                          
Sbjct  62   GSLNAFTSRENTVYYAEVLNDD--------------------------------------  83

Query  233  PSSPLYGALDRFAQFFVSPLFLESTLDR-------ELRAVDSENKK----NLQSDLWRLM  281
                L  A+DR A FF +PLF ES ++R       E+ AVDSE +     NL +  +R  
Sbjct  84   ----LPKAVDRLADFFRNPLFTESEIERERLVVLYEVEAVDSEPQLVVLENLHAAAYRNT  139

Query  282  QLNKSLSNP  290
             L +SL  P
Sbjct  140  PLGRSLLGP  148



Lambda      K        H        a         alpha
   0.317    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1535861800


Query= TCONS_00037403

Length=1154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465051 pfam16187, Peptidase_M16_M, Middle or third domain of ...  410     3e-135
CDD:425812 pfam00675, Peptidase_M16, Insulinase (Peptidase family...  120     5e-32 
CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive dom...  110     4e-28 


>CDD:465051 pfam16187, Peptidase_M16_M, Middle or third domain of peptidase_M16. 
 Peptidase_M16_M is the third domain of peptidase_M16 
in eukaryotes of the insulin-degrading-enzyme type. Insulin-degrading 
enzymes - insulysin - are zinc metallopeptidases 
that metabolize several bioactive peptides, including insulin 
and the amyloid-beta-peptide. The tertiary structure of insulin-degrading 
enzymes resembles a clamshell composed of four 
structurally similar domains arranged to enclose a large 
central chamber. Substrates must enter the chamber, and it 
is likely that a hinge-like conformational change allows substrate 
binding and product release. Triphosphates are found 
to dock between the inner surfaces of the non-catalytic domains 
three and four.
Length=284

 Score = 410 bits (1055),  Expect = 3e-135, Method: Composition-based stats.
 Identities = 148/290 (51%), Positives = 201/290 (69%), Gaps = 7/290 (2%)

Query  459  FRFKQKSPASRFTSRLSSVMQKPLPREWLLSG-SLLRKFDPDLIKKALSYLRPDNFRLIV  517
            FRF++KSP S + S L+S MQ P P E +LSG  LLR++DP+LI++ L YL P+N R+ +
Sbjct  1    FRFQEKSPPSDYVSSLASNMQ-PYPPEDILSGDYLLREYDPELIQELLDYLTPENARITL  59

Query  518  VSQEYPGDWDSKEKWYGTEYKVGKIPEDFMADIREALDTTPETRLSDLHMPHKNEFVPTR  577
            VS+E+ G+ D KE WYGTEY V  IPE+ +   + A +  PE     LH+P  N F+PT 
Sbjct  60   VSKEFEGETDQKEPWYGTEYSVEPIPEELLKKWKNAPEPNPE-----LHLPEPNPFIPTD  114

Query  578  LSVEKKEVSEPAKTPKLIRHDDHVRLWFKKDDRFWVPKGTVHITLRNPLAWATPANLVKS  637
              ++KKEV EPAK P LIR     RLW+KKDD FWVPK  ++++LR+PLA+++P N V +
Sbjct  115  FDLKKKEVKEPAKYPVLIRDTPLSRLWYKKDDTFWVPKANIYLSLRSPLAYSSPRNAVLT  174

Query  638  KLYCELVKDALVEYSYDAELAGLDYHLSASVFGLDVSVGGYNDKMAVLLEKVFTSMRDLV  697
            +LY EL+KD+L EY+YDAELAGL Y LSA+  GL +SV GYNDK+ VLLEK+   +RD  
Sbjct  175  RLYVELLKDSLNEYAYDAELAGLSYSLSATERGLTLSVSGYNDKLPVLLEKILEKLRDFE  234

Query  698  VNPNRFHIIKERLSRGYRNAEYQQPFYQVGDYTRYLTSEKTWINEQYAAE  747
            ++P+RF IIKE+L R Y+N   +QP+ Q  DY  YL  E++W  E+    
Sbjct  235  IDPDRFEIIKEQLLRSYKNFALEQPYQQAFDYLLYLLEERSWTPEEKLEA  284


>CDD:425812 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16). 
 
Length=149

 Score = 120 bits (303),  Expect = 5e-32, Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 13/147 (9%)

Query  113  LLVHDPETDKASASVNVNVGNFSDADDMPGMAHAVEHLLFMGTKKFPKENAYNQYLASHS  172
                DP  D ++  + ++ G+  + D+  G+AH +EH+ F GTKK+P  N   + L    
Sbjct  3    ASESDPPADTSTVGLWIDAGSRYEPDNNNGLAHFLEHMAFKGTKKYP-SNELEEELEKLG  61

Query  173  GSSNAYTAATETNYFFE-PSSPLYGALDRFAQFFVSPLFLESTLDR-------ELRAVDS  224
            GS NA+T+   T Y+ E  +  L  A+DR A FF +PLF ES ++R       E+ AVDS
Sbjct  62   GSLNAFTSRENTVYYAEVLNDDLPKAVDRLADFFRNPLFTESEIERERLVVLYEVEAVDS  121

Query  225  ENKK----NLQSDLWRLMQLNKSLSNP  247
            E +     NL +  +R   L +SL  P
Sbjct  122  EPQLVVLENLHAAAYRNTPLGRSLLGP  148


>CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.  Peptidase 
M16 consists of two structurally related domains. One 
is the active peptidase, whereas the other is inactive. The 
two domains hold the substrate like a clamp.
Length=181

 Score = 110 bits (276),  Expect = 4e-28, Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 6/182 (3%)

Query  274  RSEFIKFYQKHYSANRMKLCVLGRESLDELEKWVEELFSEVENKDLPQNRWDDVQPWRHE  333
            R +   FY+KHYS + M L ++G    +EL    E+ F ++      + R   ++P + +
Sbjct  4    REDLRDFYKKHYSPDNMVLVIVGDVDHEELLDLAEKYFGDLPASPKGKPRPPPLEPAKLK  63

Query  334  DLGIQIFAKPVMDTRSLDIYFPFLDEETLYESQPSRYISHLIGHEGPGSILAYIKAK-GW  392
                 +  K       L + FP        +S     ++ L+G      +   ++ K G 
Sbjct  64   -GREVVVPKKDEPQAHLALAFPGPPLNNDEDSLALDVLNELLGGGMSSRLFQELREKEGL  122

Query  393  ANGLSAGVMPICPGAAAFTISIRLTKEGLQQYREVAKVVFQYIAMLKEREPQQWVFDEMK  452
            A  +S+        +  F I   +  E      EV +++ + +  L +    +   +  K
Sbjct  123  AYSVSSFNDSY-SDSGLFGIYATVDPE---NVDEVIELILEELEKLAQEGVTEEELERAK  178

Query  453  NM  454
            N 
Sbjct  179  NQ  180



Lambda      K        H        a         alpha
   0.318    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1475823566


Query= TCONS_00037404

Length=917
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:465051 pfam16187, Peptidase_M16_M, Middle or third domain of ...  408     5e-137
CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive dom...  109     7e-28 


>CDD:465051 pfam16187, Peptidase_M16_M, Middle or third domain of peptidase_M16. 
 Peptidase_M16_M is the third domain of peptidase_M16 
in eukaryotes of the insulin-degrading-enzyme type. Insulin-degrading 
enzymes - insulysin - are zinc metallopeptidases 
that metabolize several bioactive peptides, including insulin 
and the amyloid-beta-peptide. The tertiary structure of insulin-degrading 
enzymes resembles a clamshell composed of four 
structurally similar domains arranged to enclose a large 
central chamber. Substrates must enter the chamber, and it 
is likely that a hinge-like conformational change allows substrate 
binding and product release. Triphosphates are found 
to dock between the inner surfaces of the non-catalytic domains 
three and four.
Length=284

 Score = 408 bits (1052),  Expect = 5e-137, Method: Composition-based stats.
 Identities = 148/290 (51%), Positives = 201/290 (69%), Gaps = 7/290 (2%)

Query  222  FRFKQKSPASRFTSRLSSVMQKPLPREWLLSG-SLLRKFDPDLIKKALSYLRPDNFRLIV  280
            FRF++KSP S + S L+S MQ P P E +LSG  LLR++DP+LI++ L YL P+N R+ +
Sbjct  1    FRFQEKSPPSDYVSSLASNMQ-PYPPEDILSGDYLLREYDPELIQELLDYLTPENARITL  59

Query  281  VSQEYPGDWDSKEKWYGTEYKVGKIPEDFMADIREALDTTPETRLSDLHMPHKNEFVPTR  340
            VS+E+ G+ D KE WYGTEY V  IPE+ +   + A +  PE     LH+P  N F+PT 
Sbjct  60   VSKEFEGETDQKEPWYGTEYSVEPIPEELLKKWKNAPEPNPE-----LHLPEPNPFIPTD  114

Query  341  LSVEKKEVSEPAKTPKLIRHDDHVRLWFKKDDRFWVPKGTVHITLRNPLAWATPANLVKS  400
              ++KKEV EPAK P LIR     RLW+KKDD FWVPK  ++++LR+PLA+++P N V +
Sbjct  115  FDLKKKEVKEPAKYPVLIRDTPLSRLWYKKDDTFWVPKANIYLSLRSPLAYSSPRNAVLT  174

Query  401  KLYCELVKDALVEYSYDAELAGLDYHLSASVFGLDVSVGGYNDKMAVLLEKVFTSMRDLV  460
            +LY EL+KD+L EY+YDAELAGL Y LSA+  GL +SV GYNDK+ VLLEK+   +RD  
Sbjct  175  RLYVELLKDSLNEYAYDAELAGLSYSLSATERGLTLSVSGYNDKLPVLLEKILEKLRDFE  234

Query  461  VNPNRFHIIKERLSRGYRNAEYQQPFYQVGDYTRYLTSEKTWINEQYAAE  510
            ++P+RF IIKE+L R Y+N   +QP+ Q  DY  YL  E++W  E+    
Sbjct  235  IDPDRFEIIKEQLLRSYKNFALEQPYQQAFDYLLYLLEERSWTPEEKLEA  284


>CDD:428362 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.  Peptidase 
M16 consists of two structurally related domains. One 
is the active peptidase, whereas the other is inactive. The 
two domains hold the substrate like a clamp.
Length=181

 Score = 109 bits (274),  Expect = 7e-28, Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 64/182 (35%), Gaps = 6/182 (3%)

Query  37   RSEFIKFYQKHYSANRMKLCVLGRESLDELEKWVEELFSEVENKDLPQNRWDDVQPWRHE  96
            R +   FY+KHYS + M L ++G    +EL    E+ F ++      +            
Sbjct  4    REDLRDFYKKHYSPDNMVLVIVGDVDHEELLDLAEKYFGDLPASPKGKP-RPPPLEPAKL  62

Query  97   DLGIQIFAKPVMDTRSLDIYFPFLDEETLYESQPSRYISHLIGHEGPGSILAYIKAK-GW  155
                 +  K       L + FP        +S     ++ L+G      +   ++ K G 
Sbjct  63   KGREVVVPKKDEPQAHLALAFPGPPLNNDEDSLALDVLNELLGGGMSSRLFQELREKEGL  122

Query  156  ANGLSAGVMPICPGAAAFTISIRLTKEGLQQYREVAKVVFQYIAMLKEREPQQWVFDEMK  215
            A  +S+        +  F I   +  E      EV +++ + +  L +    +   +  K
Sbjct  123  AYSVSSFNDSY-SDSGLFGIYATVDPE---NVDEVIELILEELEKLAQEGVTEEELERAK  178

Query  216  NM  217
            N 
Sbjct  179  NQ  180



Lambda      K        H        a         alpha
   0.318    0.134    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1179992508


Query= TCONS_00037405

Length=89
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  58.5    2e-12


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 58.5 bits (142),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 26/75 (35%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query  1    MLEVLDDWAEIAKAEGVTKAELAYRWIFFHSHIREDLGDAVIVGATKISQFEETIAAIQR  60
             LE L+   EIAK  GV+ A++A RW               I GA+   Q E+ + A++ 
Sbjct  222  NLEALEALEEIAKEHGVSPAQVALRWALSK-----PGVTIPIPGASNPEQLEDNLGALE-  275

Query  61   GPLSADAVKRIDAVW  75
             PLS + V RID + 
Sbjct  276  FPLSDEEVARIDELL  290



Lambda      K        H        a         alpha
   0.320    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00037406

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  224     7e-73


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 224 bits (574),  Expect = 7e-73, Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 146/308 (47%), Gaps = 27/308 (9%)

Query  8    IIFGGALFGTLPEWSTPEKVEEFLQVLERNNVKIIDTAQIY--GASEENLGQV-----KA  60
            I  G    G      + E+  E L+      +  IDTA++Y  G SEE LG+        
Sbjct  1    IGLGTWQLGGGWGPISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDYPVK  60

Query  61   AKRFIIDTKLGG--GFAPGSATKDQAIKTGDESLAKLGTDSVNVYYIHSPDRQIPLEETL  118
              + +I TK+    G  P   +K+   K+ +ESL +LGTD +++YY+H PD   P+EET 
Sbjct  61   RDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWPDPDTPIEETW  120

Query  119  AGINELHKAGKFKHFGLSNFRPEEVQEVVRIAKEKGYVLPSVYQGNYNAVARRIEAELLP  178
              + EL K GK +  G+SNF  E++++    A  KG +     Q  YN + RR E ELL 
Sbjct  121  DALEELKKEGKIRAIGVSNFDAEQIEK----ALTKGKIPIVAVQVEYNLLRRRQEEELLE  176

Query  179  VLRENNIRFYAYSPIAGGFLTKTKEQLLAGGEGRWDPNSAIGQIYHRLYNKPAMLEVLDD  238
              ++N I   AYSP+ GG LT    +    G G        G         P  LE L+ 
Sbjct  177  YCKKNGIPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGT--------PLNLEALEA  228

Query  239  WAEIAKAEGVTKAELAYRWIFFHSHIREDLGDAVIVGATKISQFEETIAAIQRGPLSADA  298
              EIAK  GV+ A++A RW               I GA+   Q E+ + A++  PLS + 
Sbjct  229  LEEIAKEHGVSPAQVALRWALSK-----PGVTIPIPGASNPEQLEDNLGALE-FPLSDEE  282

Query  299  VKRIDAVW  306
            V RID + 
Sbjct  283  VARIDELL  290



Lambda      K        H        a         alpha
   0.317    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00043044

Length=89
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  58.5    2e-12


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 58.5 bits (142),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 26/75 (35%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query  1    MLEVLDDWAEIAKAEGVTKAELAYRWIFFHSHIREDLGDAVIVGATKISQFEETIAAIQR  60
             LE L+   EIAK  GV+ A++A RW               I GA+   Q E+ + A++ 
Sbjct  222  NLEALEALEEIAKEHGVSPAQVALRWALSK-----PGVTIPIPGASNPEQLEDNLGALE-  275

Query  61   GPLSADAVKRIDAVW  75
             PLS + V RID + 
Sbjct  276  FPLSDEEVARIDELL  290



Lambda      K        H        a         alpha
   0.320    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00037407

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  224     7e-73


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 224 bits (574),  Expect = 7e-73, Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 146/308 (47%), Gaps = 27/308 (9%)

Query  8    IIFGGALFGTLPEWSTPEKVEEFLQVLERNNVKIIDTAQIY--GASEENLGQV-----KA  60
            I  G    G      + E+  E L+      +  IDTA++Y  G SEE LG+        
Sbjct  1    IGLGTWQLGGGWGPISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDYPVK  60

Query  61   AKRFIIDTKLGG--GFAPGSATKDQAIKTGDESLAKLGTDSVNVYYIHSPDRQIPLEETL  118
              + +I TK+    G  P   +K+   K+ +ESL +LGTD +++YY+H PD   P+EET 
Sbjct  61   RDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWPDPDTPIEETW  120

Query  119  AGINELHKAGKFKHFGLSNFRPEEVQEVVRIAKEKGYVLPSVYQGNYNAVARRIEAELLP  178
              + EL K GK +  G+SNF  E++++    A  KG +     Q  YN + RR E ELL 
Sbjct  121  DALEELKKEGKIRAIGVSNFDAEQIEK----ALTKGKIPIVAVQVEYNLLRRRQEEELLE  176

Query  179  VLRENNIRFYAYSPIAGGFLTKTKEQLLAGGEGRWDPNSAIGQIYHRLYNKPAMLEVLDD  238
              ++N I   AYSP+ GG LT    +    G G        G         P  LE L+ 
Sbjct  177  YCKKNGIPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGT--------PLNLEALEA  228

Query  239  WAEIAKAEGVTKAELAYRWIFFHSHIREDLGDAVIVGATKISQFEETIAAIQRGPLSADA  298
              EIAK  GV+ A++A RW               I GA+   Q E+ + A++  PLS + 
Sbjct  229  LEEIAKEHGVSPAQVALRWALSK-----PGVTIPIPGASNPEQLEDNLGALE-FPLSDEE  282

Query  299  VKRIDAVW  306
            V RID + 
Sbjct  283  VARIDELL  290



Lambda      K        H        a         alpha
   0.317    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00037408

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family. T...  224     7e-73


>CDD:425554 pfam00248, Aldo_ket_red, Aldo/keto reductase family.  This family 
includes a number of K+ ion channel beta chain regulatory 
domains - these are reported to have oxidoreductase activity.
Length=290

 Score = 224 bits (574),  Expect = 7e-73, Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 146/308 (47%), Gaps = 27/308 (9%)

Query  8    IIFGGALFGTLPEWSTPEKVEEFLQVLERNNVKIIDTAQIY--GASEENLGQV-----KA  60
            I  G    G      + E+  E L+      +  IDTA++Y  G SEE LG+        
Sbjct  1    IGLGTWQLGGGWGPISKEEALEALRAALEAGINFIDTAEVYGDGKSEELLGEALKDYPVK  60

Query  61   AKRFIIDTKLGG--GFAPGSATKDQAIKTGDESLAKLGTDSVNVYYIHSPDRQIPLEETL  118
              + +I TK+    G  P   +K+   K+ +ESL +LGTD +++YY+H PD   P+EET 
Sbjct  61   RDKVVIATKVPDGDGPWPSGGSKENIRKSLEESLKRLGTDYIDLYYLHWPDPDTPIEETW  120

Query  119  AGINELHKAGKFKHFGLSNFRPEEVQEVVRIAKEKGYVLPSVYQGNYNAVARRIEAELLP  178
              + EL K GK +  G+SNF  E++++    A  KG +     Q  YN + RR E ELL 
Sbjct  121  DALEELKKEGKIRAIGVSNFDAEQIEK----ALTKGKIPIVAVQVEYNLLRRRQEEELLE  176

Query  179  VLRENNIRFYAYSPIAGGFLTKTKEQLLAGGEGRWDPNSAIGQIYHRLYNKPAMLEVLDD  238
              ++N I   AYSP+ GG LT    +    G G        G         P  LE L+ 
Sbjct  177  YCKKNGIPLIAYSPLGGGLLTGKYTRDPDKGPGERRRLLKKGT--------PLNLEALEA  228

Query  239  WAEIAKAEGVTKAELAYRWIFFHSHIREDLGDAVIVGATKISQFEETIAAIQRGPLSADA  298
              EIAK  GV+ A++A RW               I GA+   Q E+ + A++  PLS + 
Sbjct  229  LEEIAKEHGVSPAQVALRWALSK-----PGVTIPIPGASNPEQLEDNLGALE-FPLSDEE  282

Query  299  VKRIDAVW  306
            V RID + 
Sbjct  283  VARIDELL  290



Lambda      K        H        a         alpha
   0.317    0.135    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00037409

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433540 pfam13869, NUDIX_2, Nucleotide hydrolase. Nudix hydrol...  337     2e-118


>CDD:433540 pfam13869, NUDIX_2, Nucleotide hydrolase.  Nudix hydrolases are 
found in all classes of organism and hydrolyze a wide range 
of organic pyrophosphates, including nucleoside di- and triphosphates, 
di-nucleoside and diphospho-inositol polyphosphates, 
nucleotide sugars and RNA caps, with varying degrees 
of substrate specificity.
Length=188

 Score = 337 bits (867),  Expect = 2e-118, Method: Composition-based stats.
 Identities = 121/194 (62%), Positives = 151/194 (78%), Gaps = 6/194 (3%)

Query  83   KTIRLYPLSNYTFGTKETQPEEDPSVLARLKRLEEHYEKHGMRRTCEGVLVCHEHNHPHV  142
             T  LYPLSNYTFGTKE   E+D SV  RLKRL+++YEK+GMRRT EGV++ H H HPHV
Sbjct  1    PTWLLYPLSNYTFGTKEALVEKDISVAERLKRLKDNYEKNGMRRTVEGVILVHRHGHPHV  60

Query  143  LMLQIANAFFKLPGDYLHFDDDEVEGFKKRLNERLAPVGSQFSGEGVNEDWEIGDTLAQW  202
            L+LQI N+FFKLPG  L   ++E+EG K++L ++L+P       +GV E WE+G+ L +W
Sbjct  61   LLLQIGNSFFKLPGGRLKPGENEIEGLKRKLAKKLSPE------KGVVETWEVGECLGEW  114

Query  203  WRPNFETFMYPFLPGHVTRPKECKKLYFIQLPKKKVLSVPKNMKLLAVPLFELYDNTARY  262
            WRPNFET MYP+LP H+TRPKEC KLY + LP+K   +VPKNMKLLAVPLFELYDN ARY
Sbjct  115  WRPNFETSMYPYLPAHITRPKECIKLYLVTLPEKCKFAVPKNMKLLAVPLFELYDNAARY  174

Query  263  GPQLSAIPHLLSRY  276
            GP +S++P LLSR+
Sbjct  175  GPAISSLPQLLSRF  188



Lambda      K        H        a         alpha
   0.316    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393376646


Query= TCONS_00037410

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433540 pfam13869, NUDIX_2, Nucleotide hydrolase. Nudix hydrol...  263     9e-91


>CDD:433540 pfam13869, NUDIX_2, Nucleotide hydrolase.  Nudix hydrolases are 
found in all classes of organism and hydrolyze a wide range 
of organic pyrophosphates, including nucleoside di- and triphosphates, 
di-nucleoside and diphospho-inositol polyphosphates, 
nucleotide sugars and RNA caps, with varying degrees 
of substrate specificity.
Length=188

 Score = 263 bits (675),  Expect = 9e-91, Method: Composition-based stats.
 Identities = 95/158 (60%), Positives = 120/158 (76%), Gaps = 6/158 (4%)

Query  83   KTIRLYPLSNYTFGTKETQPEEDPSVLARLKRLEEHYEKHGMRRTCEGVLVCHEHNHPHV  142
             T  LYPLSNYTFGTKE   E+D SV  RLKRL+++YEK+GMRRT EGV++ H H HPHV
Sbjct  1    PTWLLYPLSNYTFGTKEALVEKDISVAERLKRLKDNYEKNGMRRTVEGVILVHRHGHPHV  60

Query  143  LMLQIANAFFKLPGDYLHFDDDEVEGFKKRLNERLAPVGSQFSGEGVNEDWEIGDTLAQW  202
            L+LQI N+FFKLPG  L   ++E+EG K++L ++L+P       +GV E WE+G+ L +W
Sbjct  61   LLLQIGNSFFKLPGGRLKPGENEIEGLKRKLAKKLSPE------KGVVETWEVGECLGEW  114

Query  203  WRPNFETFMYPFLPGHVTRPKECKKLYFIQLPKKSKFA  240
            WRPNFET MYP+LP H+TRPKEC KLY + LP+K KFA
Sbjct  115  WRPNFETSMYPYLPAHITRPKECIKLYLVTLPEKCKFA  152



Lambda      K        H        a         alpha
   0.318    0.134    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00037411

Length=33
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433540 pfam13869, NUDIX_2, Nucleotide hydrolase. Nudix hydrol...  57.3    3e-13


>CDD:433540 pfam13869, NUDIX_2, Nucleotide hydrolase.  Nudix hydrolases are 
found in all classes of organism and hydrolyze a wide range 
of organic pyrophosphates, including nucleoside di- and triphosphates, 
di-nucleoside and diphospho-inositol polyphosphates, 
nucleotide sugars and RNA caps, with varying degrees 
of substrate specificity.
Length=188

 Score = 57.3 bits (139),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 21/30 (70%), Positives = 25/30 (83%), Gaps = 0/30 (0%)

Query  1    MYPFLPGHVTRPKECKKLYFIQLPKKSKFA  30
            MYP+LP H+TRPKEC KLY + LP+K KFA
Sbjct  123  MYPYLPAHITRPKECIKLYLVTLPEKCKFA  152



Lambda      K        H        a         alpha
   0.328    0.145    0.496    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82255108


Query= TCONS_00037413

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396362 pfam01764, Lipase_3, Lipase (class 3)                      120     1e-34


>CDD:396362 pfam01764, Lipase_3, Lipase (class 3).  
Length=139

 Score = 120 bits (304),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 59/139 (42%), Positives = 72/139 (52%), Gaps = 7/139 (5%)

Query  106  VVSFRGSRTIDTWLANLDFGLDSISDVCS-GCAVHKGFWKSWEVVANALTTELNSALATY  164
            VV+FRG+ +I  WL + DF L    D    G  VH GF  ++  V   +  EL   L  Y
Sbjct  1    VVAFRGTNSILDWLTDFDFSLTPFKDFFLGGGKVHSGFLSAYTSVREQVLAELKRLLEKY  60

Query  165  SGYTVVFTGHSFGAALATLGAATLRKAG----IPVELYGYGSPRVGNKALATFITGQGSN  220
              Y++V TGHS G ALA+L A  L + G      V +  +G PRVGN   A     QG  
Sbjct  61   PDYSIVVTGHSLGGALASLAALDLVENGLRLSSRVTVVTFGQPRVGNLEFAKLHDSQGPK  120

Query  221  --YRVTHTNDIVPRLPPRV  237
              YRV H  DIVPRLPP V
Sbjct  121  FSYRVVHQRDIVPRLPPIV  139



Lambda      K        H        a         alpha
   0.317    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00037412

Length=22


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.140    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 72624728


Query= TCONS_00043045

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432184 pfam11913, DUF3431, Protein of unknown function (DUF34...  384     3e-136


>CDD:432184 pfam11913, DUF3431, Protein of unknown function (DUF3431).  This 
family of proteins are functionally uncharacterized. This 
protein is found in eukaryotes. Proteins in this family are 
typically between 291 to 390 amino acids in length. This protein 
has a conserved NLRC sequence motif.
Length=211

 Score = 384 bits (988),  Expect = 3e-136, Method: Composition-based stats.
 Identities = 122/217 (56%), Positives = 157/217 (72%), Gaps = 7/217 (3%)

Query  78   MVVASMKSDNTSWLFENFPDWHKSVYVVDDKNAELTVPQNKGRESMVYLTYIIDNYDHLP  137
            +VVA +KS++TSWL E  PDW  ++YVVDD +AEL VP+NKGRE+MVYLTYIIDNYD+LP
Sbjct  1    LVVAKLKSEDTSWLDEELPDWQPAIYVVDDPSAELHVPKNKGREAMVYLTYIIDNYDNLP  60

Query  138  DVMLFIHSQRFQWHNDDP-YYDGVPVLRRFQVSYLQKQGYVNLRCAWTLGCPAEIHPHTD  196
            DV +F+H+ RF WHNDDP  YD V +LRR ++  +Q++GYVNLRC W+ GCPAEIHP   
Sbjct  61   DVTIFMHAHRFAWHNDDPLDYDAVQMLRRLRLDRVQREGYVNLRCHWSPGCPAEIHPW--  118

Query  197  THRDDVHAGEYFKNGFMELFPGVDVPDEVGVSCCAQFGVTNWKVRERPKSDYVRFRKWLS  256
                     E +   + ELFPG  VP+ +   CCAQF V+  ++R+RP+ DYVR+R WL 
Sbjct  119  ----SKPEEEAYPEAWAELFPGTPVPEVLAQPCCAQFAVSRERIRQRPREDYVRYRDWLL  174

Query  257  ETPLKDDLSGRIMEYSWHMIFGQGPVFCPTAEECYCK  293
            ET L D +SGR+MEY WH+IFG   V+CP   +CYC 
Sbjct  175  ETDLDDYISGRVMEYLWHIIFGGEAVYCPDEHQCYCD  211



Lambda      K        H        a         alpha
   0.322    0.138    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00037414

Length=299
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396362 pfam01764, Lipase_3, Lipase (class 3)                      120     1e-34


>CDD:396362 pfam01764, Lipase_3, Lipase (class 3).  
Length=139

 Score = 120 bits (304),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 59/139 (42%), Positives = 72/139 (52%), Gaps = 7/139 (5%)

Query  109  VVSFRGSRTIDTWLANLDFGLDSISDVCS-GCAVHKGFWKSWEVVANALTTELNSALATY  167
            VV+FRG+ +I  WL + DF L    D    G  VH GF  ++  V   +  EL   L  Y
Sbjct  1    VVAFRGTNSILDWLTDFDFSLTPFKDFFLGGGKVHSGFLSAYTSVREQVLAELKRLLEKY  60

Query  168  SGYTVVFTGHSFGAALATLGAATLRKAG----IPVELYGYGSPRVGNKALATFITGQGSN  223
              Y++V TGHS G ALA+L A  L + G      V +  +G PRVGN   A     QG  
Sbjct  61   PDYSIVVTGHSLGGALASLAALDLVENGLRLSSRVTVVTFGQPRVGNLEFAKLHDSQGPK  120

Query  224  --YRVTHTNDIVPRLPPRV  240
              YRV H  DIVPRLPP V
Sbjct  121  FSYRVVHQRDIVPRLPPIV  139



Lambda      K        H        a         alpha
   0.316    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 337635016


Query= TCONS_00037416

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432184 pfam11913, DUF3431, Protein of unknown function (DUF34...  384     3e-136


>CDD:432184 pfam11913, DUF3431, Protein of unknown function (DUF3431).  This 
family of proteins are functionally uncharacterized. This 
protein is found in eukaryotes. Proteins in this family are 
typically between 291 to 390 amino acids in length. This protein 
has a conserved NLRC sequence motif.
Length=211

 Score = 384 bits (988),  Expect = 3e-136, Method: Composition-based stats.
 Identities = 122/217 (56%), Positives = 157/217 (72%), Gaps = 7/217 (3%)

Query  78   MVVASMKSDNTSWLFENFPDWHKSVYVVDDKNAELTVPQNKGRESMVYLTYIIDNYDHLP  137
            +VVA +KS++TSWL E  PDW  ++YVVDD +AEL VP+NKGRE+MVYLTYIIDNYD+LP
Sbjct  1    LVVAKLKSEDTSWLDEELPDWQPAIYVVDDPSAELHVPKNKGREAMVYLTYIIDNYDNLP  60

Query  138  DVMLFIHSQRFQWHNDDP-YYDGVPVLRRFQVSYLQKQGYVNLRCAWTLGCPAEIHPHTD  196
            DV +F+H+ RF WHNDDP  YD V +LRR ++  +Q++GYVNLRC W+ GCPAEIHP   
Sbjct  61   DVTIFMHAHRFAWHNDDPLDYDAVQMLRRLRLDRVQREGYVNLRCHWSPGCPAEIHPW--  118

Query  197  THRDDVHAGEYFKNGFMELFPGVDVPDEVGVSCCAQFGVTNWKVRERPKSDYVRFRKWLS  256
                     E +   + ELFPG  VP+ +   CCAQF V+  ++R+RP+ DYVR+R WL 
Sbjct  119  ----SKPEEEAYPEAWAELFPGTPVPEVLAQPCCAQFAVSRERIRQRPREDYVRYRDWLL  174

Query  257  ETPLKDDLSGRIMEYSWHMIFGQGPVFCPTAEECYCK  293
            ET L D +SGR+MEY WH+IFG   V+CP   +CYC 
Sbjct  175  ETDLDDYISGRVMEYLWHIIFGGEAVYCPDEHQCYCD  211



Lambda      K        H        a         alpha
   0.322    0.138    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00037415

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432184 pfam11913, DUF3431, Protein of unknown function (DUF34...  96.5    1e-26


>CDD:432184 pfam11913, DUF3431, Protein of unknown function (DUF3431).  This 
family of proteins are functionally uncharacterized. This 
protein is found in eukaryotes. Proteins in this family are 
typically between 291 to 390 amino acids in length. This protein 
has a conserved NLRC sequence motif.
Length=211

 Score = 96.5 bits (241),  Expect = 1e-26, Method: Composition-based stats.
 Identities = 31/48 (65%), Positives = 40/48 (83%), Gaps = 0/48 (0%)

Query  78   MVVASMKSDNTSWLFENFPDWHKSVYVVDDKNAELTVPQNKGRESMVY  125
            +VVA +KS++TSWL E  PDW  ++YVVDD +AEL VP+NKGRE+MVY
Sbjct  1    LVVAKLKSEDTSWLDEELPDWQPAIYVVDDPSAELHVPKNKGREAMVY  48



Lambda      K        H        a         alpha
   0.318    0.131    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00037417

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432184 pfam11913, DUF3431, Protein of unknown function (DUF34...  384     3e-136


>CDD:432184 pfam11913, DUF3431, Protein of unknown function (DUF3431).  This 
family of proteins are functionally uncharacterized. This 
protein is found in eukaryotes. Proteins in this family are 
typically between 291 to 390 amino acids in length. This protein 
has a conserved NLRC sequence motif.
Length=211

 Score = 384 bits (988),  Expect = 3e-136, Method: Composition-based stats.
 Identities = 122/217 (56%), Positives = 157/217 (72%), Gaps = 7/217 (3%)

Query  78   MVVASMKSDNTSWLFENFPDWHKSVYVVDDKNAELTVPQNKGRESMVYLTYIIDNYDHLP  137
            +VVA +KS++TSWL E  PDW  ++YVVDD +AEL VP+NKGRE+MVYLTYIIDNYD+LP
Sbjct  1    LVVAKLKSEDTSWLDEELPDWQPAIYVVDDPSAELHVPKNKGREAMVYLTYIIDNYDNLP  60

Query  138  DVMLFIHSQRFQWHNDDP-YYDGVPVLRRFQVSYLQKQGYVNLRCAWTLGCPAEIHPHTD  196
            DV +F+H+ RF WHNDDP  YD V +LRR ++  +Q++GYVNLRC W+ GCPAEIHP   
Sbjct  61   DVTIFMHAHRFAWHNDDPLDYDAVQMLRRLRLDRVQREGYVNLRCHWSPGCPAEIHPW--  118

Query  197  THRDDVHAGEYFKNGFMELFPGVDVPDEVGVSCCAQFGVTNWKVRERPKSDYVRFRKWLS  256
                     E +   + ELFPG  VP+ +   CCAQF V+  ++R+RP+ DYVR+R WL 
Sbjct  119  ----SKPEEEAYPEAWAELFPGTPVPEVLAQPCCAQFAVSRERIRQRPREDYVRYRDWLL  174

Query  257  ETPLKDDLSGRIMEYSWHMIFGQGPVFCPTAEECYCK  293
            ET L D +SGR+MEY WH+IFG   V+CP   +CYC 
Sbjct  175  ETDLDDYISGRVMEYLWHIIFGGEAVYCPDEHQCYCD  211



Lambda      K        H        a         alpha
   0.322    0.138    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00043046

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432184 pfam11913, DUF3431, Protein of unknown function (DUF34...  384     3e-136


>CDD:432184 pfam11913, DUF3431, Protein of unknown function (DUF3431).  This 
family of proteins are functionally uncharacterized. This 
protein is found in eukaryotes. Proteins in this family are 
typically between 291 to 390 amino acids in length. This protein 
has a conserved NLRC sequence motif.
Length=211

 Score = 384 bits (988),  Expect = 3e-136, Method: Composition-based stats.
 Identities = 122/217 (56%), Positives = 157/217 (72%), Gaps = 7/217 (3%)

Query  78   MVVASMKSDNTSWLFENFPDWHKSVYVVDDKNAELTVPQNKGRESMVYLTYIIDNYDHLP  137
            +VVA +KS++TSWL E  PDW  ++YVVDD +AEL VP+NKGRE+MVYLTYIIDNYD+LP
Sbjct  1    LVVAKLKSEDTSWLDEELPDWQPAIYVVDDPSAELHVPKNKGREAMVYLTYIIDNYDNLP  60

Query  138  DVMLFIHSQRFQWHNDDP-YYDGVPVLRRFQVSYLQKQGYVNLRCAWTLGCPAEIHPHTD  196
            DV +F+H+ RF WHNDDP  YD V +LRR ++  +Q++GYVNLRC W+ GCPAEIHP   
Sbjct  61   DVTIFMHAHRFAWHNDDPLDYDAVQMLRRLRLDRVQREGYVNLRCHWSPGCPAEIHPW--  118

Query  197  THRDDVHAGEYFKNGFMELFPGVDVPDEVGVSCCAQFGVTNWKVRERPKSDYVRFRKWLS  256
                     E +   + ELFPG  VP+ +   CCAQF V+  ++R+RP+ DYVR+R WL 
Sbjct  119  ----SKPEEEAYPEAWAELFPGTPVPEVLAQPCCAQFAVSRERIRQRPREDYVRYRDWLL  174

Query  257  ETPLKDDLSGRIMEYSWHMIFGQGPVFCPTAEECYCK  293
            ET L D +SGR+MEY WH+IFG   V+CP   +CYC 
Sbjct  175  ETDLDDYISGRVMEYLWHIIFGGEAVYCPDEHQCYCD  211



Lambda      K        H        a         alpha
   0.322    0.138    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00037419

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463041 pfam10276, zf-CHCC, Zinc-finger domain. This is a shor...  80.3    4e-21


>CDD:463041 pfam10276, zf-CHCC, Zinc-finger domain.  This is a short zinc-finger 
domain conserved from fungi to humans. It is Cx8Hx14Cx2C.
Length=37

 Score = 80.3 bits (199),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 24/36 (67%), Positives = 27/36 (75%), Gaps = 0/36 (0%)

Query  137  RIVSCDGGGGPLGHPRIFINTDKPEIATCGYCGLPF  172
            R V+CDGGGG LGHPR++IN DKP    C YCGL F
Sbjct  2    RRVACDGGGGALGHPRVYINLDKPGPVECPYCGLRF  37



Lambda      K        H        a         alpha
   0.314    0.128    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00037420

Length=198


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.120    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 192184550


Query= TCONS_00043047

Length=184
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463041 pfam10276, zf-CHCC, Zinc-finger domain. This is a shor...  80.3    2e-21


>CDD:463041 pfam10276, zf-CHCC, Zinc-finger domain.  This is a short zinc-finger 
domain conserved from fungi to humans. It is Cx8Hx14Cx2C.
Length=37

 Score = 80.3 bits (199),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 24/36 (67%), Positives = 27/36 (75%), Gaps = 0/36 (0%)

Query  137  RIVSCDGGGGPLGHPRIFINTDKPEIATCGYCGLPF  172
            R V+CDGGGG LGHPR++IN DKP    C YCGL F
Sbjct  2    RRVACDGGGGALGHPRVYINLDKPGPVECPYCGLRF  37



Lambda      K        H        a         alpha
   0.316    0.129    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00037422

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463041 pfam10276, zf-CHCC, Zinc-finger domain. This is a shor...  80.3    3e-21


>CDD:463041 pfam10276, zf-CHCC, Zinc-finger domain.  This is a short zinc-finger 
domain conserved from fungi to humans. It is Cx8Hx14Cx2C.
Length=37

 Score = 80.3 bits (199),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 24/36 (67%), Positives = 27/36 (75%), Gaps = 0/36 (0%)

Query  137  RIVSCDGGGGPLGHPRIFINTDKPEIATCGYCGLPF  172
            R V+CDGGGG LGHPR++IN DKP    C YCGL F
Sbjct  2    RRVACDGGGGALGHPRVYINLDKPGPVECPYCGLRF  37



Lambda      K        H        a         alpha
   0.314    0.128    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0748    0.140     1.90     42.6     43.6 

Effective search space used: 200540400


Query= TCONS_00043048

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463041 pfam10276, zf-CHCC, Zinc-finger domain. This is a shor...  79.1    3e-21


>CDD:463041 pfam10276, zf-CHCC, Zinc-finger domain.  This is a short zinc-finger 
domain conserved from fungi to humans. It is Cx8Hx14Cx2C.
Length=37

 Score = 79.1 bits (196),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 24/36 (67%), Positives = 27/36 (75%), Gaps = 0/36 (0%)

Query  77   RIVSCDGGGGPLGHPRIFINTDKPEIATCGYCGLPF  112
            R V+CDGGGG LGHPR++IN DKP    C YCGL F
Sbjct  2    RRVACDGGGGALGHPRVYINLDKPGPVECPYCGLRF  37



Lambda      K        H        a         alpha
   0.316    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128026216


Query= TCONS_00037424

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00037425

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00043049

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00037426

Length=713


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.132    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 914369800


Query= TCONS_00037427

Length=359
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  248     3e-81


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 248 bits (635),  Expect = 3e-81, Method: Composition-based stats.
 Identities = 104/304 (34%), Positives = 150/304 (49%), Gaps = 13/304 (4%)

Query  37   LTEAIGNTPLIRLKRLSEETGRNIFGKAEFQNPGGSVKDRAALFVVKDAEEKGLLKPGGT  96
            ++  IG TPL+RL RLS+E G +++ K E  NP GS KDR AL ++   +E    + G T
Sbjct  1    ISLGIGPTPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNLLLRLKEG---EGGKT  57

Query  97   VVEGTAGNTGIGLAHVCRSKGYKLVIYMPNTQSQGKIDLLRLLGAEVYPVPAVAFDNPQN  156
            VVE ++GN G  LA      G K+ I +P     GK+ L+R LGAEV  V    +D    
Sbjct  58   VVEASSGNHGRALAAAAARLGLKVTIVVPEDAPPGKLLLMRALGAEVVLVGGD-YDEAVA  116

Query  157  YNHQARRHAESLENAVWTNQFDNTANRQAHIETTGPEIWAQTDGKVDAFTCATGTGGTLA  216
                AR  A     A + NQ+DN  N + +  T G EI  Q  G  DA     G GG +A
Sbjct  117  A---ARELAAEGPGAYYINQYDNPLNIEGY-GTIGLEILEQLGGDPDAVVVPVGGGGLIA  172

Query  217  GITRYLKTASDGRVKCFLADPPGS-VLHSYIQSGGNLIERSGSSITEGIGQGRVTDNLKP  275
            GI R LK      V+    +P G+  L   + +G  +      +I +G+G G     L  
Sbjct  173  GIARGLK-ELGPDVRVIGVEPEGAPALARSLAAGRPVPVPVADTIADGLGVGDEPGALAL  231

Query  276  DI--DLLDGSLTISDEKSIEMVYRCLDEEGLYLGASSALNVVAAKEV-AEQLPKGSNVVT  332
            D+  + +   +T+SDE+++E +      EG+ +  SSA  + A K   A +L  G  VV 
Sbjct  232  DLLDEYVGEVVTVSDEEALEAMRLLARREGIVVEPSSAAALAALKLALAGELKGGDRVVV  291

Query  333  ILCD  336
            +L  
Sbjct  292  VLTG  295



Lambda      K        H        a         alpha
   0.315    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00043050

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  192     2e-61


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 192 bits (489),  Expect = 2e-61, Method: Composition-based stats.
 Identities = 75/187 (40%), Positives = 98/187 (52%), Gaps = 8/187 (4%)

Query  37   LTEAIGNTPLIRLKRLSEETGRNIFGKAEFQNPGGSVKDRAALFVVKDAEEKGLLKPGGT  96
            ++  IG TPL+RL RLS+E G +++ K E  NP GS KDR AL ++   +E    + G T
Sbjct  1    ISLGIGPTPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNLLLRLKEG---EGGKT  57

Query  97   VVEGTAGNTGIGLAHVCRSKGYKLVIYMPNTQSQGKIDLLRLLGAEVYPVPAVAFDNPQN  156
            VVE ++GN G  LA      G K+ I +P     GK+ L+R LGAEV  V    +D    
Sbjct  58   VVEASSGNHGRALAAAAARLGLKVTIVVPEDAPPGKLLLMRALGAEVVLVGGD-YDEAVA  116

Query  157  YNHQARRHAESLENAVWTNQFDNTANRQAHIETTGPEIWAQTDGKVDAFTCATGTGGTLA  216
                AR  A     A + NQ+DN  N + +  T G EI  Q  G  DA     G GG +A
Sbjct  117  A---ARELAAEGPGAYYINQYDNPLNIEGY-GTIGLEILEQLGGDPDAVVVPVGGGGLIA  172

Query  217  GITRYLK  223
            GI R LK
Sbjct  173  GIARGLK  179



Lambda      K        H        a         alpha
   0.316    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00037428

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme....  248     2e-81


>CDD:459749 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme.  Members 
of this family are all pyridoxal-phosphate dependent enzymes. 
This family includes: serine dehydratase EC:4.2.1.13 P20132, 
threonine dehydratase EC:4.2.1.16, tryptophan synthase 
beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine 
synthase EC:4.2.99.8 P11096, cystathionine beta-synthase 
EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase 
EC:4.1.99.4.
Length=295

 Score = 248 bits (636),  Expect = 2e-81, Method: Composition-based stats.
 Identities = 104/304 (34%), Positives = 150/304 (49%), Gaps = 13/304 (4%)

Query  37   LTEAIGNTPLIRLKRLSEETGRNIFGKAEFQNPGGSVKDRAALFVVKDAEEKGLLKPGGT  96
            ++  IG TPL+RL RLS+E G +++ K E  NP GS KDR AL ++   +E    + G T
Sbjct  1    ISLGIGPTPLVRLPRLSKELGVDVYLKLESLNPTGSFKDRGALNLLLRLKEG---EGGKT  57

Query  97   VVEGTAGNTGIGLAHVCRSKGYKLVIYMPNTQSQGKIDLLRLLGAEVYPVPAVAFDNPQN  156
            VVE ++GN G  LA      G K+ I +P     GK+ L+R LGAEV  V    +D    
Sbjct  58   VVEASSGNHGRALAAAAARLGLKVTIVVPEDAPPGKLLLMRALGAEVVLVGGD-YDEAVA  116

Query  157  YNHQARRHAESLENAVWTNQFDNTANRQAHIETTGPEIWAQTDGKVDAFTCATGTGGTLA  216
                AR  A     A + NQ+DN  N + +  T G EI  Q  G  DA     G GG +A
Sbjct  117  A---ARELAAEGPGAYYINQYDNPLNIEGY-GTIGLEILEQLGGDPDAVVVPVGGGGLIA  172

Query  217  GITRYLKTASDGRVKCFLADPPGS-VLHSYIQSGGNLIERSGSSITEGIGQGRVTDNLKP  275
            GI R LK      V+    +P G+  L   + +G  +      +I +G+G G     L  
Sbjct  173  GIARGLK-ELGPDVRVIGVEPEGAPALARSLAAGRPVPVPVADTIADGLGVGDEPGALAL  231

Query  276  DI--DLLDGSLTISDEKSIEMVYRCLDEEGLYLGASSALNVVAAKEV-AEQLPKGSNVVT  332
            D+  + +   +T+SDE+++E +      EG+ +  SSA  + A K   A +L  G  VV 
Sbjct  232  DLLDEYVGEVVTVSDEEALEAMRLLARREGIVVEPSSAAALAALKLALAGELKGGDRVVV  291

Query  333  ILCD  336
            +L  
Sbjct  292  VLTG  295



Lambda      K        H        a         alpha
   0.315    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00043051

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:372535 pfam13257, DUF4048, Domain of unknown function (DUF404...  223     1e-70


>CDD:372535 pfam13257, DUF4048, Domain of unknown function (DUF4048).  This 
presumed domain is functionally uncharacterized. This domain 
family is found in eukaryotes, and is typically between 
228 and 257 amino acids in length.
Length=252

 Score = 223 bits (570),  Expect = 1e-70, Method: Composition-based stats.
 Identities = 125/252 (50%), Positives = 156/252 (62%), Gaps = 24/252 (10%)

Query  239  HTRALSLLSP---VNGPGANQQFGTDA---AGNRTTRTPRSATLPSVERTAT------TQ  286
            HTR LSLLSP          Q   + +     +R +R PRSATLPSV+R+        + 
Sbjct  1    HTRTLSLLSPDRDNVKLPFPQPQRSPSPEGDFSRPSRHPRSATLPSVDRSDNSNKATESS  60

Query  287  MSERPTEDMISQWRRTMPPPSREALVRTGKQMASDLREGLWTFLEDIRQATVGEEGINAT  346
             +     ++ +QWRR++PPP+REAL+RTGKQMASD ++GLWTFLEDIRQATVGEEGINAT
Sbjct  61   TATDEVPNLKAQWRRSLPPPTREALMRTGKQMASDFKDGLWTFLEDIRQATVGEEGINAT  120

Query  347  QSRGVPPARKRDSSSASRSR--DRLSVHGGKSSRSPSSARGKAAG---TQLSGKDTKSVD  401
            +SR     + R      +       S   G SSRS SS+  KA     ++ SGKD+ S D
Sbjct  121  ESRTKQAPQTRRPRRQGKRSGLRPSSRGSGSSSRSSSSSSSKATASASSKKSGKDSTSSD  180

Query  402  IDVSFWSEFGIDTAGQKS-------TKARGASNTPRGATEQETSNNIDVEENWDDWDTPQ  454
            IDVSFWSEFG+DT GQ S       + ++ A N  R     E SN +DV++NWD WDTPQ
Sbjct  181  IDVSFWSEFGVDTPGQTSASPVKKASASKHAQNPSRHKRTSEVSNLLDVDDNWDVWDTPQ  240

Query  455  PKKTHTPSSSRS  466
            P KTHTPSSSRS
Sbjct  241  PPKTHTPSSSRS  252



Lambda      K        H        a         alpha
   0.307    0.122    0.341    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 602598268


Query= TCONS_00043052

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  124     1e-36
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            120     1e-34


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 124 bits (314),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 36/104 (35%), Positives = 53/104 (51%), Gaps = 1/104 (1%)

Query  42   KSQRNTFVGTPFWMAPEVIQQAGYDYKADIWSLGITAIEMINGEPP-HASTHPMKVLFLI  100
             S   TFVGTP++MAPEV+    Y  K D+WSLG    E++ G+PP            +I
Sbjct  114  GSSLTTFVGTPWYMAPEVLGGNPYGPKVDVWSLGCILYELLTGKPPFPGINGNEIYELII  173

Query  101  PKEPAPRLEGNEYSSAFKDFIAQCLTKDPERRPSAKELLRHKFI  144
             +  A     +  S   KD + + L KDP +R +A + L+H + 
Sbjct  174  DQPYAFPELPSNLSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 120 bits (304),  Expect = 1e-34, Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 71/146 (49%), Gaps = 8/146 (5%)

Query  1    MDYLHSEGKIHRDIKAANVLLSHTGKVKLADFGVAAQLTNIKSQRNTFVGTPF---WMAP  57
            M+YL S+  +HRD+ A N L+S    VK++DFG++  + +    R    G      WMAP
Sbjct  115  MEYLESKNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKR-GGGKLPIKWMAP  173

Query  58   EVIQQAGYDYKADIWSLGITAIEMI-NGEPPHASTHPMKVLFLIPKEPAPRLEGNEYSSA  116
            E ++   +  K+D+WS G+   E+   GE P+      +VL  +      RL   E    
Sbjct  174  ESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEFLEDG--YRLPQPENCPD  231

Query  117  F-KDFIAQCLTKDPERRPSAKELLRH  141
               D + QC   DPE RP+  EL+  
Sbjct  232  ELYDLMKQCWAYDPEDRPTFSELVED  257



Lambda      K        H        a         alpha
   0.318    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 169334154


Query= TCONS_00037431

Length=571
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  190     4e-57
CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  148     5e-43


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 190 bits (484),  Expect = 4e-57, Method: Composition-based stats.
 Identities = 77/251 (31%), Positives = 110/251 (44%), Gaps = 19/251 (8%)

Query  292  RPKAVNVAYFGLESYDQVRQAYKEAKGHLSEILSAFELMDGRSQKLVHESTGSKYPLEGE  351
             P+   VA  G  S++   +A +E       I +A ELMD  +  LV  + G    L  +
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARA-GIIPAALELMDNDALDLVEATLGFPKGLPRD  59

Query  352  YPFYCLVETSGSNAEHDMEKLEGFLEHIMGEGIVADGVLAQDETQFQSIWRWREGITE--  409
                 LVE  G + E   E+LE  +E I+  G   D V+A DE + + +W  R+      
Sbjct  60   AAALLLVEFEGDDEETAEEELE-AVEAILEAGGAGDVVVATDEAEAERLWAARKYALPLR  118

Query  410  --ALSHLGGTYKYDVSIPLPELYQLVEDCRERLTTMGFVGDDDSFPVRAVVGYGHMGDSN  467
                      +  DVS+P   L  LV D +E L   G V          V  +GH GD N
Sbjct  119  DALGGAGPAVFSEDVSVPRSRLADLVRDIKELLDKYGLV----------VCLFGHAGDGN  168

Query  468  LHLNISVRQYNKEVEKAIEPWVYEW---IQKRNGSISAEHGLGLAKKEFIGYSQNDTMLK  524
            LHL I     + E E+  E    E      +  GSIS EHG+G  KK ++     +  L 
Sbjct  169  LHLYILFDFRDPEQEERAEKLFDEIMDLALELGGSISGEHGVGRDKKPYLEREFGEEGLA  228

Query  525  LMKQLKTLYDP  535
            LM+++K  +DP
Sbjct  229  LMRRIKAAFDP  239


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 148 bits (376),  Expect = 5e-43, Method: Composition-based stats.
 Identities = 58/137 (42%), Positives = 81/137 (59%), Gaps = 1/137 (1%)

Query  118  KLVLKPQNKEEVSQVLKYCNEKKLAVVPQGGNTGLVGGSVPVFDEIVINTSRMNKIRSFD  177
              V+ P+++EEV+ +++  NE  L V+P+GG + L+GG+V     IV++ SR+N I   D
Sbjct  2    AAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGGAVQ-TGGIVLDLSRLNGILEID  60

Query  178  EASGVLVVDAGVILEVADQYLAERDHLFPLDLGAKGSCHVGGNVATNAGGLRLLRYGSLH  237
               G   V+AGV L    + LA +  L  LD G+     VGG +ATNAGG    +YG   
Sbjct  61   PEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLTR  120

Query  238  GNVLGLEAVLADGTIVD  254
             NVLGLE VLADG +V 
Sbjct  121  DNVLGLEVVLADGEVVR  137



Lambda      K        H        a         alpha
   0.317    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 715831012


Query= TCONS_00037429

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  190     1e-57
CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  148     2e-43


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 190 bits (485),  Expect = 1e-57, Method: Composition-based stats.
 Identities = 77/251 (31%), Positives = 110/251 (44%), Gaps = 19/251 (8%)

Query  292  RPKAVNVAYFGLESYDQVRQAYKEAKGHLSEILSAFELMDGRSQKLVHESTGSKYPLEGE  351
             P+   VA  G  S++   +A +E       I +A ELMD  +  LV  + G    L  +
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARA-GIIPAALELMDNDALDLVEATLGFPKGLPRD  59

Query  352  YPFYCLVETSGSNAEHDMEKLEGFLEHIMGEGIVADGVLAQDETQFQSIWRWREGITE--  409
                 LVE  G + E   E+LE  +E I+  G   D V+A DE + + +W  R+      
Sbjct  60   AAALLLVEFEGDDEETAEEELE-AVEAILEAGGAGDVVVATDEAEAERLWAARKYALPLR  118

Query  410  --ALSHLGGTYKYDVSIPLPELYQLVEDCRERLTTMGFVGDDDSFPVRAVVGYGHMGDSN  467
                      +  DVS+P   L  LV D +E L   G V          V  +GH GD N
Sbjct  119  DALGGAGPAVFSEDVSVPRSRLADLVRDIKELLDKYGLV----------VCLFGHAGDGN  168

Query  468  LHLNISVRQYNKEVEKAIEPWVYEW---IQKRNGSISAEHGLGLAKKEFIGYSQNDTMLK  524
            LHL I     + E E+  E    E      +  GSIS EHG+G  KK ++     +  L 
Sbjct  169  LHLYILFDFRDPEQEERAEKLFDEIMDLALELGGSISGEHGVGRDKKPYLEREFGEEGLA  228

Query  525  LMKQLKTLYDP  535
            LM+++K  +DP
Sbjct  229  LMRRIKAAFDP  239


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 148 bits (377),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 58/137 (42%), Positives = 81/137 (59%), Gaps = 1/137 (1%)

Query  118  KLVLKPQNKEEVSQVLKYCNEKKLAVVPQGGNTGLVGGSVPVFDEIVINTSRMNKIRSFD  177
              V+ P+++EEV+ +++  NE  L V+P+GG + L+GG+V     IV++ SR+N I   D
Sbjct  2    AAVVLPESEEEVAAIVRLANENGLPVLPRGGGSSLLGGAVQ-TGGIVLDLSRLNGILEID  60

Query  178  EASGVLVVDAGVILEVADQYLAERDHLFPLDLGAKGSCHVGGNVATNAGGLRLLRYGSLH  237
               G   V+AGV L    + LA +  L  LD G+     VGG +ATNAGG    +YG   
Sbjct  61   PEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGGYGSEKYGLTR  120

Query  238  GNVLGLEAVLADGTIVD  254
             NVLGLE VLADG +V 
Sbjct  121  DNVLGLEVVLADGEVVR  137



Lambda      K        H        a         alpha
   0.317    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 679815634


Query= TCONS_00037430

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-termi...  190     5e-59
CDD:426326 pfam01565, FAD_binding_4, FAD binding domain. This fam...  98.8    1e-25


>CDD:397178 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain. 
 This domain has a ferredoxin-like fold.
Length=248

 Score = 190 bits (484),  Expect = 5e-59, Method: Composition-based stats.
 Identities = 77/251 (31%), Positives = 110/251 (44%), Gaps = 19/251 (8%)

Query  138  RPKAVNVAYFGLESYDQVRQAYKEAKGHLSEILSAFELMDGRSQKLVHESTGSKYPLEGE  197
             P+   VA  G  S++   +A +E       I +A ELMD  +  LV  + G    L  +
Sbjct  1    LPEVRAVALVGFPSFEAAVKAVREIARA-GIIPAALELMDNDALDLVEATLGFPKGLPRD  59

Query  198  YPFYCLVETSGSNAEHDMEKLEGFLEHIMGEGIVADGVLAQDETQFQSIWRWREGITE--  255
                 LVE  G + E   E+LE  +E I+  G   D V+A DE + + +W  R+      
Sbjct  60   AAALLLVEFEGDDEETAEEELE-AVEAILEAGGAGDVVVATDEAEAERLWAARKYALPLR  118

Query  256  --ALSHLGGTYKYDVSIPLPELYQLVEDCRERLTTMGFVGDDDSFPVRAVVGYGHMGDSN  313
                      +  DVS+P   L  LV D +E L   G V          V  +GH GD N
Sbjct  119  DALGGAGPAVFSEDVSVPRSRLADLVRDIKELLDKYGLV----------VCLFGHAGDGN  168

Query  314  LHLNISVRQYNKEVEKAIEPWVYEW---IQKRNGSISAEHGLGLAKKEFIGYSQNDTMLK  370
            LHL I     + E E+  E    E      +  GSIS EHG+G  KK ++     +  L 
Sbjct  169  LHLYILFDFRDPEQEERAEKLFDEIMDLALELGGSISGEHGVGRDKKPYLEREFGEEGLA  228

Query  371  LMKQLKTLYDP  381
            LM+++K  +DP
Sbjct  229  LMRRIKAAFDP  239


>CDD:426326 pfam01565, FAD_binding_4, FAD binding domain.  This family consists 
of various enzymes that use FAD as a co-factor, most 
of the enzymes are similar to oxygen oxidoreductase. One of 
the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, 
the alignment includes the FAD binding site, called the 
PP-loop, between residues 99-110. The FAD molecule is covalently 
bound in the known structure, however the residue that 
links to the FAD is not in the alignment. VAO catalyzes the 
oxidation of a wide variety of substrates, ranging form aromatic 
amines to 4-alkylphenols. Other members of this family 
include D-lactate dehydrogenase, this enzyme catalyzes the 
conversion of D-lactate to pyruvate using FAD as a co-factor; 
mitomycin radical oxidase, this enzyme oxidizes the reduced 
form of mitomycins and is involved in mitomycin resistance. 
This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine 
reductase enzyme EC:1.1.1.158. This enzyme is involved 
in the biosynthesis of peptidoglycan.
Length=139

 Score = 98.8 bits (247),  Expect = 1e-25, Method: Composition-based stats.
 Identities = 40/87 (46%), Positives = 48/87 (55%), Gaps = 0/87 (0%)

Query  14   SRMNKIRSFDEASGVLVVDAGVILEVADQYLAERDHLFPLDLGAKGSCHVGGNVATNAGG  73
            SR+N I   D   G   V+AGV L    + LA +  L  LD G+     VGG +ATNAGG
Sbjct  51   SRLNGILEIDPEDGTATVEAGVTLGDLVRALAAKGLLLGLDPGSGIPGTVGGAIATNAGG  110

Query  74   LRLLRYGSLHGNVLGLEAVLADGTIVD  100
                +YG    NVLGLE VLADG +V 
Sbjct  111  YGSEKYGLTRDNVLGLEVVLADGEVVR  137



Lambda      K        H        a         alpha
   0.317    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453575864


Query= TCONS_00043053

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427865 pfam04321, RmlD_sub_bind, RmlD substrate binding domai...  178     7e-55
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  88.1    4e-21


>CDD:427865 pfam04321, RmlD_sub_bind, RmlD substrate binding domain.  L-rhamnose 
is a saccharide required for the virulence of some bacteria. 
Its precursor, dTDP-L-rhamnose, is synthesized by four 
different enzymes the final one of which is RmlD. The RmlD 
substrate binding domain is responsible for binding a sugar 
nucleotide.
Length=284

 Score = 178 bits (453),  Expect = 7e-55, Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 126/289 (44%), Gaps = 24/289 (8%)

Query  5    VLITGATGLLGRQVFNTFKHSGCFVVGQGYSRATPPTILKADLEKPEDIKNLLDEAKPQI  64
            +LITGA G LG ++       G  VV          T  + DL  PE +  LL E KP +
Sbjct  1    ILITGANGQLGTELRRLLAERGIEVV--------ALTRAELDLTDPEAVARLLREIKPDV  52

Query  65   VIHCAANRSPDLCDKNPEQARRVNVDATRTLAEETSARKALLVYISTDYVFSGKEGEAPY  124
            V++ AA  + D  +  P+ A  +N  A   LAE  +A  A L++ISTDYVF G     PY
Sbjct  53   VVNAAAYTAVDKAESEPDLAYAINALAPANLAEACAAVGAPLIHISTDYVFDG-TKPRPY  111

Query  125  EVDAEPSPTNYYGQLKRDGEIAVLEATKDTGLGIVLRVPLLYGTAQNNSESAVNILIDAI  184
            E D E +P N YG+ K  GE AV  A       ++LR   +YG   NN        +  +
Sbjct  112  EEDDETNPLNVYGRTKLAGEQAVRAAGPRH---LILRTSWVYGEYGNN-------FVKTM  161

Query  185  WKAQDENAGVKMDDWAQRYPTNTEDVARVCRDIVIKYLKERPRIHELPKVLHFSSEDRMT  244
             +   E   +K+ D     PT   D+A V   ++ +   + P       V H S+  + +
Sbjct  162  LRLAAEREELKVVDDQFGRPTWARDLADVLLQLLERLAADPP----YWGVYHLSNSGQTS  217

Query  245  KYEMCEKLAEVLGLSLAGMIRNKQGNDPNASVQRPYDTHLSTKVLKDLG  293
             YE    + +  G      +R     +     +RP ++ L T  L+   
Sbjct  218  WYEFARAIFDEAGAD-PSEVRPITTAEFPTPARRPANSVLDTTKLEATF  265


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 88.1 bits (219),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 47/175 (27%), Positives = 72/175 (41%), Gaps = 13/175 (7%)

Query  5    VLITGATGLLGRQVFNTFKHSGCFVVG-------QGYSRATPPTILKADLEKPEDIKNLL  57
            +L+TGATG +G  +       G  V+G          +R      ++ DL   + ++ LL
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARLADLRFVEGDLTDRDALEKLL  60

Query  58   DEAKPQIVIHCAANRSPDLCDKNPEQARRVNVDATRTLAEETSARKA-LLVYISTDYVFS  116
             + +P  VIH AA        ++PE     NV  T  L E          ++ S+  V+ 
Sbjct  61   ADVRPDAVIHLAAVGGVGASIEDPEDFIEANVLGTLNLLEAARKAGVKRFLFASSSEVY-  119

Query  117  GKEGEAPYEVDAE---PSPTNYYGQLKRDGEIAVLEATKDTGL-GIVLRVPLLYG  167
            G   E P E        +P + Y   K  GE  VL      GL  ++LR+  +YG
Sbjct  120  GDGAEIPQEETTLTGPLAPNSPYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174



Lambda      K        H        a         alpha
   0.316    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00043054

Length=875


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.125    0.363    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1119700920


Query= TCONS_00037432

Length=119


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83156040


Query= TCONS_00043055

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427865 pfam04321, RmlD_sub_bind, RmlD substrate binding domai...  163     3e-49
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  74.6    3e-16


>CDD:427865 pfam04321, RmlD_sub_bind, RmlD substrate binding domain.  L-rhamnose 
is a saccharide required for the virulence of some bacteria. 
Its precursor, dTDP-L-rhamnose, is synthesized by four 
different enzymes the final one of which is RmlD. The RmlD 
substrate binding domain is responsible for binding a sugar 
nucleotide.
Length=284

 Score = 163 bits (415),  Expect = 3e-49, Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 130/309 (42%), Gaps = 32/309 (10%)

Query  5    VLITGATGLLGRQVFNTFKHSGCFVVGQGYSRATPPTILKADLEKPEDIKNLLDEAK--L  62
            +LITGA G LG ++       G  VV          T  + DL  PE +  LL E K  +
Sbjct  1    ILITGANGQLGTELRRLLAERGIEVV--------ALTRAELDLTDPEAVARLLREIKPDV  52

Query  63   VPLHCAANRSPDLCDKNPEQARRVNVDATRTLAEETSARKALLVYISTDYVFSGKEGEAP  122
            V ++ AA  + D  +  P+ A  +N  A   LAE  +A  A L++ISTDYVF G     P
Sbjct  53   V-VNAAAYTAVDKAESEPDLAYAINALAPANLAEACAAVGAPLIHISTDYVFDG-TKPRP  110

Query  123  YEVDAEPSPTNYYGQLKRDGEIAVLEATKDTGLGIVLRVPLLYGTAQNNSESAVNILIDA  182
            YE D E +P N YG+ K  GE AV  A       ++LR   +YG   NN        +  
Sbjct  111  YEEDDETNPLNVYGRTKLAGEQAVRAAGPRH---LILRTSWVYGEYGNN-------FVKT  160

Query  183  IWKAQDENAGVKMDDWAQRYPTNTEDVARVCRDIVIKYLKERPRIHELPKVLHFSSEDRM  242
            + +   E   +K+ D     PT   D+A V   ++ +   + P       V H S+  + 
Sbjct  161  MLRLAAEREELKVVDDQFGRPTWARDLADVLLQLLERLAADPP----YWGVYHLSNSGQT  216

Query  243  TKYEMCEKLAEVLGLSLAGMIRNKQGNDPNASVQRPYDTHLSTKVLKDLGVDVQTTDFVA  302
            + YE    + +  G      +R     +     +RP ++ L T  L+     V       
Sbjct  217  SWYEFARAIFDEAGAD-PSEVRPITTAEFPTPARRPANSVLDTTKLEATFGIVLRP----  271

Query  303  WWRKQLGAY  311
             WR+ L   
Sbjct  272  -WREALKEV  279


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 74.6 bits (184),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 14/175 (8%)

Query  5    VLITGATGLLGRQVFNTFKHSGCFVVG-------QGYSRATPPTILKADLEKPEDIKNLL  57
            +L+TGATG +G  +       G  V+G          +R      ++ DL   + ++ LL
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARLADLRFVEGDLTDRDALEKLL  60

Query  58   DEAKL-VPLHCAANRSPDLCDKNPEQARRVNVDATRTLAEETSARKA-LLVYISTDYVFS  115
             + +    +H AA        ++PE     NV  T  L E          ++ S+  V+ 
Sbjct  61   ADVRPDAVIHLAAVGGVGASIEDPEDFIEANVLGTLNLLEAARKAGVKRFLFASSSEVY-  119

Query  116  GKEGEAPYEVDAE---PSPTNYYGQLKRDGEIAVLEATKDTGL-GIVLRVPLLYG  166
            G   E P E        +P + Y   K  GE  VL      GL  ++LR+  +YG
Sbjct  120  GDGAEIPQEETTLTGPLAPNSPYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174



Lambda      K        H        a         alpha
   0.316    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00037433

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           63.4    5e-13


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 63.4 bits (155),  Expect = 5e-13, Method: Composition-based stats.
 Identities = 25/98 (26%), Positives = 44/98 (45%), Gaps = 1/98 (1%)

Query  1    MGILTFACYYFPIVGASQSTERQGLVLLYCIQFYVYASTFAHMVIAAIPDTQTASPIVIL  60
              ++     YF +VG   S  R  L LL  +   + AS+    + A  P  + AS +  L
Sbjct  105  QSLIFLLIVYF-MVGLPPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPL  163

Query  61   LFSMMLTFCGVMQSPSALPGFWIFMYRLSPFTYWVGGM  98
            +   +L   G      ++P +W ++Y L+P TY +  +
Sbjct  164  VLLPLLLLSGFFIPIDSMPVWWQWIYYLNPLTYAIEAL  201



Lambda      K        H        a         alpha
   0.329    0.139    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00037434

Length=605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           171     2e-50
CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds t...  137     2e-39
CDD:394964 pfam00005, ABC_tran, ABC transporter. ABC transporters...  98.5    1e-24


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 171 bits (436),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 65/205 (32%), Positives = 121/205 (59%), Gaps = 2/205 (1%)

Query  77   NTRRAYQRLWNDISSTLSTVIGNVVMALIIGSVFYGTANTTAGLSSRGATLFFAVLLNAL  136
              +R + R W D S  L  +I  ++MALI G++F    N   GL+ R   LFF++L NA 
Sbjct  1    LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLN-RPGLLFFSILFNAF  59

Query  137  TAMSEI-NSLYSQRPIVEKQVSYAFYHPSTEAIAGVISDIPVKFVLAVVFNIILYFLANL  195
            +A+S I      +R ++ ++++   Y PS   +A ++S++P+  + +++F +I+YF+  L
Sbjct  60   SALSGISPVFEKERGVLYRELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGL  119

Query  196  RREASQFFIYFLITFIIMFVMSAVFRTMAAVTKTASQAMGLAGVLILALIVYTGFVLPVP  255
               A +FF++ L+  +     S++   ++A+  +   A  L  +++L L++ +GF +P+ 
Sbjct  120  PPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPID  179

Query  256  SMHPWFEWIHYINPIYYAFEILVAN  280
            SM  W++WI+Y+NP+ YA E L AN
Sbjct  180  SMPVWWQWIYYLNPLTYAIEALRAN  204


>CDD:461906 pfam06422, PDR_CDR, CDR ABC transporter.  Corresponds to a region 
of the PDR/CDR subgroup of ABC transporters comprising 
extracellular loop 3, transmembrane segment 6 and linker region.
Length=92

 Score = 137 bits (347),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 41/88 (47%), Positives = 61/88 (69%), Gaps = 0/88 (0%)

Query  294  PAYADLSGDSFSCSTSGSVAGQTTVNGDRFIYYNFKYSYNHVWRNFGILMAFLIGFMAIY  353
            P Y ++SG +  C+  G+V GQT V+GD ++  ++ YSY+H+WRNFGIL+AF I F+A+Y
Sbjct  5    PGYENVSGANQVCAVVGAVPGQTFVSGDDYLAASYGYSYSHLWRNFGILIAFWIFFLALY  64

Query  354  FLASELNSSTTSTAEALVFRRNHQPQHM  381
             +A+E NS+  S  E LVF+R   P+  
Sbjct  65   LIATEYNSAAKSKGEVLVFKRGKAPKLK  92


>CDD:394964 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a 
large family of proteins responsible for translocation of a 
variety of compounds across biological membranes. ABC transporters 
are the largest family of proteins in many completely 
sequenced bacteria. ABC transporters are composed of two copies 
of this domain and two copies of a transmembrane domain 
pfam00664. These four domains may belong to a single polypeptide 
as in CFTR, or belong in different polypeptide chains.
Length=150

 Score = 98.5 bits (246),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 80/155 (52%), Gaps = 10/155 (6%)

Query  440  LDHVSGWVKPGTLTALMGVSGAGKTTLLDVLAHRTSMGVITGDMFVNGKALD----TSFQ  495
            L +VS  + PG + AL+G +GAGK+TLL ++A   S     G + ++G+ L      S +
Sbjct  1    LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLS--PTEGTILLDGQDLTDDERKSLR  58

Query  496  RKTGYVQQQDLHLETATVRESLRFSALLRQPPTVSIQEKYDYVEEVIRMLRMEEFAEAIV  555
            ++ GYV Q        TVRE+LR   LL+         +    EE +  L + + A+  V
Sbjct  59   KEIGYVFQDPQLFPRLTVRENLRLGLLLKGLSKREKDAR---AEEALEKLGLGDLADRPV  115

Query  556  GVPGEGLNVEQRKLLTIGVELAAKPKLLLFLDEPT  590
            G     L+  QR+ + I   L  KPKLLL LDEPT
Sbjct  116  GERPGTLSGGQRQRVAIARALLTKPKLLL-LDEPT  149



Lambda      K        H        a         alpha
   0.322    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 766641564


Query= TCONS_00037435

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:427865 pfam04321, RmlD_sub_bind, RmlD substrate binding domai...  162     6e-49
CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydrat...  74.3    4e-16


>CDD:427865 pfam04321, RmlD_sub_bind, RmlD substrate binding domain.  L-rhamnose 
is a saccharide required for the virulence of some bacteria. 
Its precursor, dTDP-L-rhamnose, is synthesized by four 
different enzymes the final one of which is RmlD. The RmlD 
substrate binding domain is responsible for binding a sugar 
nucleotide.
Length=284

 Score = 162 bits (413),  Expect = 6e-49, Method: Composition-based stats.
 Identities = 84/290 (29%), Positives = 125/290 (43%), Gaps = 27/290 (9%)

Query  5    VLITGATGLLGRQVFNTFKHSGCFVVGQGYSRATPPTILKADLEKPEDIKNLLDEAK--L  62
            +LITGA G LG ++       G  VV          T  + DL  PE +  LL E K  +
Sbjct  1    ILITGANGQLGTELRRLLAERGIEVV--------ALTRAELDLTDPEAVARLLREIKPDV  52

Query  63   VPLHCAANRSPDLCDKNPEQARRVNVDATRTLAEETSARKALLVYISTDYVFSGKEGEAP  122
            V ++ AA  + D  +  P+ A  +N  A   LAE  +A  A L++ISTDYVF G     P
Sbjct  53   V-VNAAAYTAVDKAESEPDLAYAINALAPANLAEACAAVGAPLIHISTDYVFDG-TKPRP  110

Query  123  YEVDAEPSPTNYYGQLKRDGEIAVLEATKDTGLGIVLRVPLLYGTAQNNSESAVNILIDA  182
            YE D E +P N YG+ K  GE AV  A       ++LR   +YG   NN        +  
Sbjct  111  YEEDDETNPLNVYGRTKLAGEQAVRAAGPRH---LILRTSWVYGEYGNN-------FVKT  160

Query  183  IWKAQDENAGVKMDDWAQRYPTNTEDVARVCRDIVIKYLKERPRIHELPKVLHFSSEDRM  242
            + +   E   +K+ D     PT   D+A V   ++ +   + P       V H S+  + 
Sbjct  161  MLRLAAEREELKVVDDQFGRPTWARDLADVLLQLLERLAADPP----YWGVYHLSNSGQT  216

Query  243  TKYEMCEKLAEVLGLSLAGMIRNKQGNDPNASVQRPYDTHLSTKVLKDLG  292
            + YE    + +  G      +R     +     +RP ++ L T  L+   
Sbjct  217  SWYEFARAIFDEAGAD-PSEVRPITTAEFPTPARRPANSVLDTTKLEATF  265


>CDD:396097 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. 
 This family of proteins utilize NAD as a cofactor. The 
proteins in this family use nucleotide-sugar substrates for 
a variety of chemical reactions.
Length=238

 Score = 74.3 bits (183),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 14/175 (8%)

Query  5    VLITGATGLLGRQVFNTFKHSGCFVVG-------QGYSRATPPTILKADLEKPEDIKNLL  57
            +L+TGATG +G  +       G  V+G          +R      ++ DL   + ++ LL
Sbjct  1    ILVTGATGFIGSHLVRRLLEKGYEVIGLDRLTSASNTARLADLRFVEGDLTDRDALEKLL  60

Query  58   DEAKL-VPLHCAANRSPDLCDKNPEQARRVNVDATRTLAEETSARKA-LLVYISTDYVFS  115
             + +    +H AA        ++PE     NV  T  L E          ++ S+  V+ 
Sbjct  61   ADVRPDAVIHLAAVGGVGASIEDPEDFIEANVLGTLNLLEAARKAGVKRFLFASSSEVY-  119

Query  116  GKEGEAPYEVDAE---PSPTNYYGQLKRDGEIAVLEATKDTGL-GIVLRVPLLYG  166
            G   E P E        +P + Y   K  GE  VL      GL  ++LR+  +YG
Sbjct  120  GDGAEIPQEETTLTGPLAPNSPYAAAKLAGEWLVLAYAAAYGLRAVILRLFNVYG  174



Lambda      K        H        a         alpha
   0.316    0.133    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 345598106


Query= TCONS_00043056

Length=827


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.125    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050796248


Query= TCONS_00037436

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           94.6    3e-24


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 94.6 bits (236),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 67/138 (49%), Gaps = 2/138 (1%)

Query  1    MPLFVTQRSLYEVRERPSKAYSWKAFLIANIVVELPYQIVMGILTFACYYFPIVGASQST  60
             P+F  +R +   RE  S  YS  A+++A I+ ELP  ++  ++     YF +VG   S 
Sbjct  66   SPVFEKERGVLY-RELASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYF-MVGLPPSA  123

Query  61   ERQGLVLLYCIQFYVYASTFAHMVIAAIPDTQTASPIVILLFSMMLTFCGVMQSPSALPG  120
             R  L LL  +   + AS+    + A  P  + AS +  L+   +L   G      ++P 
Sbjct  124  GRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPLVLLPLLLLSGFFIPIDSMPV  183

Query  121  FWIFMYRLSPFTYWVGGM  138
            +W ++Y L+P TY +  +
Sbjct  184  WWQWIYYLNPLTYAIEAL  201



Lambda      K        H        a         alpha
   0.329    0.139    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00043057

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter           64.2    1e-13


>CDD:426023 pfam01061, ABC2_membrane, ABC-2 type transporter.  
Length=204

 Score = 64.2 bits (157),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 25/98 (26%), Positives = 44/98 (45%), Gaps = 1/98 (1%)

Query  1    MGILTFACYYFPIVGASQSTERQGLVLLYCIQFYVYASTFAHMVIAAIPDTQTASPIVIL  60
              ++     YF +VG   S  R  L LL  +   + AS+    + A  P  + AS +  L
Sbjct  105  QSLIFLLIVYF-MVGLPPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQLGPL  163

Query  61   LFSMMLTFCGVMQSPSALPGFWIFMYRLSPFTYWVGGM  98
            +   +L   G      ++P +W ++Y L+P TY +  +
Sbjct  164  VLLPLLLLSGFFIPIDSMPVWWQWIYYLNPLTYAIEAL  201



Lambda      K        H        a         alpha
   0.328    0.138    0.453    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00037437

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  67.1    3e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 67.1 bits (164),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 92/247 (37%), Gaps = 25/247 (10%)

Query  182  IEAFQKSICGQFLPLINRTCFECTIRAAYEKKLSDISPGLSSARICILAFMALSSFFAAQ  241
            ++ F K+   QF P+++R  F       +    +  SP L      +LA +AL + F+  
Sbjct  1    LDLFFKNFHPQF-PILHRPSFLRDYFELFSSPSNYASPLL------LLAILALGALFSES  53

Query  242  PHVDKIVTA-------DEYAREAQDLLPEMLNESV-TLDGLQALTMLCICSQAISGDMLS  293
            P      +          +   A  L+ E  +    +L  LQAL +L +     +GD   
Sbjct  54   PTARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELG-TGDRKL  112

Query  294  IELLLSMATRFVFHLKGNVYPEDVEGV-TLDAKLH--VRNLFWICFTLDKMFSLRTGLQP  350
                  +A R    L  +  P  V     L  +     R LFW CF LD++ SL  G  P
Sbjct  113  HWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPP  172

Query  351  FIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYNHTMFLALIRLSLVQSKVYHGLY  404
             +  ++ DL LP              +          +    L LI+LS + SK+   L 
Sbjct  173  LLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLL  232

Query  405  SFSAQRQ  411
            S  +   
Sbjct  233  SIRSTLD  239



Lambda      K        H        a         alpha
   0.324    0.137    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00037438

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  59.4    9e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 59.4 bits (144),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 32/111 (29%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query  39   RNLFWICFTLDKMFSLRTGLQPFIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYN  92
            R LFW CF LD++ SL  G  P +  ++ DL LP              +          +
Sbjct  151  RRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKS  210

Query  93   HTMFLALIRLSLVQSKVYHGLYSFSAQRQ--SDADLLATIRSLDIALEEWR  141
                L LI+LS + SK+   L S  +          L+ +R L+ AL+ WR
Sbjct  211  IKPPLFLIKLSKILSKILGSLLSIRSTLDQRDLQLKLSWVRELERALDNWR  261



Lambda      K        H        a         alpha
   0.325    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00037440

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  76.0    7e-16


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 76.0 bits (187),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 103/269 (38%), Gaps = 27/269 (10%)

Query  194  IEAFQKSICGQFLPLINRTCFECTIRAAYEKKLSDISPGLSSARICILAFMALSSFFAAQ  253
            ++ F K+   QF P+++R  F       +    +  SP L      +LA +AL + F+  
Sbjct  1    LDLFFKNFHPQF-PILHRPSFLRDYFELFSSPSNYASPLL------LLAILALGALFSES  53

Query  254  PHVDKIVTA-------DEYAREAQDLLPEMLNESV-TLDGLQALTMLCICSQAISGDMLS  305
            P      +          +   A  L+ E  +    +L  LQAL +L +     +GD   
Sbjct  54   PTARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELG-TGDRKL  112

Query  306  IELLLSMATRFVFHLKGNVYPEDVEGV-TLDAKLH--VRNLFWICFTLDKMFSLRTGLQP  362
                  +A R    L  +  P  V     L  +     R LFW CF LD++ SL  G  P
Sbjct  113  HWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPP  172

Query  363  FIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYNHTMFLALIRLSLVQSKVYHGLY  416
             +  ++ DL LP              +          +    L LI+LS + SK+   L 
Sbjct  173  LLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLL  232

Query  417  SFSAQRQ--SDADLLATIRSLDIALEEWR  443
            S  +          L+ +R L+ AL+ WR
Sbjct  233  SIRSTLDQRDLQLKLSWVRELERALDNWR  261



Lambda      K        H        a         alpha
   0.323    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 769630420


Query= TCONS_00037439

Length=608
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  76.0    7e-16


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 76.0 bits (187),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 103/269 (38%), Gaps = 27/269 (10%)

Query  195  IEAFQKSICGQFLPLINRTCFECTIRAAYEKKLSDISPGLSSARICILAFMALSSFFAAQ  254
            ++ F K+   QF P+++R  F       +    +  SP L      +LA +AL + F+  
Sbjct  1    LDLFFKNFHPQF-PILHRPSFLRDYFELFSSPSNYASPLL------LLAILALGALFSES  53

Query  255  PHVDKIVTA-------DEYAREAQDLLPEMLNESV-TLDGLQALTMLCICSQAISGDMLS  306
            P      +          +   A  L+ E  +    +L  LQAL +L +     +GD   
Sbjct  54   PTARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELG-TGDRKL  112

Query  307  IELLLSMATRFVFHLKGNVYPEDVEGV-TLDAKLH--VRNLFWICFTLDKMFSLRTGLQP  363
                  +A R    L  +  P  V     L  +     R LFW CF LD++ SL  G  P
Sbjct  113  HWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPP  172

Query  364  FIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYNHTMFLALIRLSLVQSKVYHGLY  417
             +  ++ DL LP              +          +    L LI+LS + SK+   L 
Sbjct  173  LLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLL  232

Query  418  SFSAQRQ--SDADLLATIRSLDIALEEWR  444
            S  +          L+ +R L+ AL+ WR
Sbjct  233  SIRSTLDQRDLQLKLSWVRELERALDNWR  261



Lambda      K        H        a         alpha
   0.323    0.135    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 771124848


Query= TCONS_00037441

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  59.4    9e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 59.4 bits (144),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 32/111 (29%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query  39   RNLFWICFTLDKMFSLRTGLQPFIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYN  92
            R LFW CF LD++ SL  G  P +  ++ DL LP              +          +
Sbjct  151  RRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKS  210

Query  93   HTMFLALIRLSLVQSKVYHGLYSFSAQRQ--SDADLLATIRSLDIALEEWR  141
                L LI+LS + SK+   L S  +          L+ +R L+ AL+ WR
Sbjct  211  IKPPLFLIKLSKILSKILGSLLSIRSTLDQRDLQLKLSWVRELERALDNWR  261



Lambda      K        H        a         alpha
   0.325    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0751    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00037442

Length=184
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  58.3    4e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 58.3 bits (141),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 38/147 (26%), Positives = 55/147 (37%), Gaps = 10/147 (7%)

Query  43   LQALTMLCICSQAISGDMLSIELLLSMATRFVFHLKGNVYPEDVEGV-TLDAKLH--VRN  99
            LQAL +L +     +GD         +A R    L  +  P  V     L  +     R 
Sbjct  94   LQALLLLELYELG-TGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRR  152

Query  100  LFWICFTLDKMFSLRTGLQPFIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYNHT  153
            LFW CF LD++ SL  G  P +  ++ DL LP              +          +  
Sbjct  153  LFWACFYLDRLISLILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIK  212

Query  154  MFLALIRLSLVQSKVYHGLYSFSAQRQ  180
              L LI+LS + SK+   L S  +   
Sbjct  213  PPLFLIKLSKILSKILGSLLSIRSTLD  239



Lambda      K        H        a         alpha
   0.326    0.138    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00037443

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  59.4    9e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 59.4 bits (144),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 32/111 (29%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query  39   RNLFWICFTLDKMFSLRTGLQPFIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYN  92
            R LFW CF LD++ SL  G  P +  ++ DL LP              +          +
Sbjct  151  RRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKS  210

Query  93   HTMFLALIRLSLVQSKVYHGLYSFSAQRQ--SDADLLATIRSLDIALEEWR  141
                L LI+LS + SK+   L S  +          L+ +R L+ AL+ WR
Sbjct  211  IKPPLFLIKLSKILSKILGSLLSIRSTLDQRDLQLKLSWVRELERALDNWR  261



Lambda      K        H        a         alpha
   0.325    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00043058

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  67.5    3e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 67.5 bits (165),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 92/247 (37%), Gaps = 25/247 (10%)

Query  182  IEAFQKSICGQFLPLINRTCFECTIRAAYEKKLSDISPGLSSARICILAFMALSSFFAAQ  241
            ++ F K+   QF P+++R  F       +    +  SP L      +LA +AL + F+  
Sbjct  1    LDLFFKNFHPQF-PILHRPSFLRDYFELFSSPSNYASPLL------LLAILALGALFSES  53

Query  242  PHVDKIVTA-------DEYAREAQDLLPEMLNESV-TLDGLQALTMLCICSQAISGDMLS  293
            P      +          +   A  L+ E  +    +L  LQAL +L +     +GD   
Sbjct  54   PTARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELG-TGDRKL  112

Query  294  IELLLSMATRFVFHLKGNVYPEDVEGV-TLDAKLH--VRNLFWICFTLDKMFSLRTGLQP  350
                  +A R    L  +  P  V     L  +     R LFW CF LD++ SL  G  P
Sbjct  113  HWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPP  172

Query  351  FIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYNHTMFLALIRLSLVQSKVYHGLY  404
             +  ++ DL LP              +          +    L LI+LS + SK+   L 
Sbjct  173  LLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLL  232

Query  405  SFSAQRQ  411
            S  +   
Sbjct  233  SIRSTLD  239



Lambda      K        H        a         alpha
   0.324    0.137    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00037445

Length=224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  59.8    2e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 59.8 bits (145),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 32/111 (29%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query  39   RNLFWICFTLDKMFSLRTGLQPFIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYN  92
            R LFW CF LD++ SL  G  P +  ++ DL LP              +          +
Sbjct  151  RRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKS  210

Query  93   HTMFLALIRLSLVQSKVYHGLYSFSAQRQ--SDADLLATIRSLDIALEEWR  141
                L LI+LS + SK+   L S  +          L+ +R L+ AL+ WR
Sbjct  211  IKPPLFLIKLSKILSKILGSLLSIRSTLDQRDLQLKLSWVRELERALDNWR  261



Lambda      K        H        a         alpha
   0.325    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00043059

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  65.2    2e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 65.2 bits (159),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 58/246 (24%), Positives = 92/246 (37%), Gaps = 28/246 (11%)

Query  195  IEAFQKSICGQFLPLINRTCFECTIRAAYEKKLSDISPGLSSARICILAFMALSSFFAAQ  254
            ++ F K+   QF P+++R  F       +    +  SP L      +LA +AL + F+  
Sbjct  1    LDLFFKNFHPQF-PILHRPSFLRDYFELFSSPSNYASPLL------LLAILALGALFSES  53

Query  255  PHVDKIVTA-------DEYAREAQDLLPEMLNESV-TLDGLQALTMLAI----SGDMLSI  302
            P      +          +   A  L+ E  +    +L  LQAL +L +    +GD    
Sbjct  54   PTARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  303  ELLLSMATRFVFHLKGNVYPEDVEGV-TLDAKLH--VRNLFWICFTLDKMFSLRTGLQPF  359
                 +A R    L  +  P  V     L  +     R LFW CF LD++ SL  G  P 
Sbjct  114  WRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPL  173

Query  360  IDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYNHTMFLALIRLSLVQSKVYHGLYS  413
            +  ++ DL LP              +          +    L LI+LS + SK+   L S
Sbjct  174  LSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLS  233

Query  414  FSAQRQ  419
              +   
Sbjct  234  IRSTLD  239



Lambda      K        H        a         alpha
   0.323    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00043060

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  59.4    9e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 59.4 bits (144),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 32/111 (29%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query  39   RNLFWICFTLDKMFSLRTGLQPFIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYN  92
            R LFW CF LD++ SL  G  P +  ++ DL LP              +          +
Sbjct  151  RRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKS  210

Query  93   HTMFLALIRLSLVQSKVYHGLYSFSAQRQ--SDADLLATIRSLDIALEEWR  141
                L LI+LS + SK+   L S  +          L+ +R L+ AL+ WR
Sbjct  211  IKPPLFLIKLSKILSKILGSLLSIRSTLDQRDLQLKLSWVRELERALDNWR  261



Lambda      K        H        a         alpha
   0.325    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00043061

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  59.4    9e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 59.4 bits (144),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 32/111 (29%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query  39   RNLFWICFTLDKMFSLRTGLQPFIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYN  92
            R LFW CF LD++ SL  G  P +  ++ DL LP              +          +
Sbjct  151  RRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKS  210

Query  93   HTMFLALIRLSLVQSKVYHGLYSFSAQRQ--SDADLLATIRSLDIALEEWR  141
                L LI+LS + SK+   L S  +          L+ +R L+ AL+ WR
Sbjct  211  IKPPLFLIKLSKILSKILGSLLSIRSTLDQRDLQLKLSWVRELERALDNWR  261



Lambda      K        H        a         alpha
   0.325    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00037444

Length=224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  59.8    2e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 59.8 bits (145),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 32/111 (29%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query  39   RNLFWICFTLDKMFSLRTGLQPFIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYN  92
            R LFW CF LD++ SL  G  P +  ++ DL LP              +          +
Sbjct  151  RRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKS  210

Query  93   HTMFLALIRLSLVQSKVYHGLYSFSAQRQ--SDADLLATIRSLDIALEEWR  141
                L LI+LS + SK+   L S  +          L+ +R L+ AL+ WR
Sbjct  211  IKPPLFLIKLSKILSKILGSLLSIRSTLDQRDLQLKLSWVRELERALDNWR  261



Lambda      K        H        a         alpha
   0.325    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 231214480


Query= TCONS_00043062

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  73.3    5e-15


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 73.3 bits (180),  Expect = 5e-15, Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 103/268 (38%), Gaps = 30/268 (11%)

Query  182  IEAFQKSICGQFLPLINRTCFECTIRAAYEKKLSDISPGLSSARICILAFMALSSFFAAQ  241
            ++ F K+   QF P+++R  F       +    +  SP L      +LA +AL + F+  
Sbjct  1    LDLFFKNFHPQF-PILHRPSFLRDYFELFSSPSNYASPLL------LLAILALGALFSES  53

Query  242  PHVDKIVTA-------DEYAREAQDLLPEMLNESV-TLDGLQALTMLAI----SGDMLSI  289
            P      +          +   A  L+ E  +    +L  LQAL +L +    +GD    
Sbjct  54   PTARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  290  ELLLSMATRFVFHLKGNVYPEDVEGV-TLDAKLH--VRNLFWICFTLDKMFSLRTGLQPF  346
                 +A R    L  +  P  V     L  +     R LFW CF LD++ SL  G  P 
Sbjct  114  WRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPL  173

Query  347  IDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYNHTMFLALIRLSLVQSKVYHGLYS  400
            +  ++ DL LP              +          +    L LI+LS + SK+   L S
Sbjct  174  LSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLS  233

Query  401  FSAQRQ--SDADLLATIRSLDIALEEWR  426
              +          L+ +R L+ AL+ WR
Sbjct  234  IRSTLDQRDLQLKLSWVRELERALDNWR  261



Lambda      K        H        a         alpha
   0.324    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 744225144


Query= TCONS_00037446

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  67.5    3e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 67.5 bits (165),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 92/247 (37%), Gaps = 25/247 (10%)

Query  182  IEAFQKSICGQFLPLINRTCFECTIRAAYEKKLSDISPGLSSARICILAFMALSSFFAAQ  241
            ++ F K+   QF P+++R  F       +    +  SP L      +LA +AL + F+  
Sbjct  1    LDLFFKNFHPQF-PILHRPSFLRDYFELFSSPSNYASPLL------LLAILALGALFSES  53

Query  242  PHVDKIVTA-------DEYAREAQDLLPEMLNESV-TLDGLQALTMLCICSQAISGDMLS  293
            P      +          +   A  L+ E  +    +L  LQAL +L +     +GD   
Sbjct  54   PTARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELG-TGDRKL  112

Query  294  IELLLSMATRFVFHLKGNVYPEDVEGV-TLDAKLH--VRNLFWICFTLDKMFSLRTGLQP  350
                  +A R    L  +  P  V     L  +     R LFW CF LD++ SL  G  P
Sbjct  113  HWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPP  172

Query  351  FIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYNHTMFLALIRLSLVQSKVYHGLY  404
             +  ++ DL LP              +          +    L LI+LS + SK+   L 
Sbjct  173  LLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLL  232

Query  405  SFSAQRQ  411
            S  +   
Sbjct  233  SIRSTLD  239



Lambda      K        H        a         alpha
   0.324    0.137    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00037447

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  59.4    9e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 59.4 bits (144),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 32/111 (29%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query  39   RNLFWICFTLDKMFSLRTGLQPFIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYN  92
            R LFW CF LD++ SL  G  P +  ++ DL LP              +          +
Sbjct  151  RRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKS  210

Query  93   HTMFLALIRLSLVQSKVYHGLYSFSAQRQ--SDADLLATIRSLDIALEEWR  141
                L LI+LS + SK+   L S  +          L+ +R L+ AL+ WR
Sbjct  211  IKPPLFLIKLSKILSKILGSLLSIRSTLDQRDLQLKLSWVRELERALDNWR  261



Lambda      K        H        a         alpha
   0.325    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00043063

Length=184
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  58.3    4e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 58.3 bits (141),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 38/147 (26%), Positives = 55/147 (37%), Gaps = 10/147 (7%)

Query  43   LQALTMLCICSQAISGDMLSIELLLSMATRFVFHLKGNVYPEDVEGV-TLDAKLH--VRN  99
            LQAL +L +     +GD         +A R    L  +  P  V     L  +     R 
Sbjct  94   LQALLLLELYELG-TGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRR  152

Query  100  LFWICFTLDKMFSLRTGLQPFIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYNHT  153
            LFW CF LD++ SL  G  P +  ++ DL LP              +          +  
Sbjct  153  LFWACFYLDRLISLILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIK  212

Query  154  MFLALIRLSLVQSKVYHGLYSFSAQRQ  180
              L LI+LS + SK+   L S  +   
Sbjct  213  PPLFLIKLSKILSKILGSLLSIRSTLD  239



Lambda      K        H        a         alpha
   0.326    0.138    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 172462416


Query= TCONS_00037448

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  73.3    6e-15


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 73.3 bits (180),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 103/268 (38%), Gaps = 30/268 (11%)

Query  182  IEAFQKSICGQFLPLINRTCFECTIRAAYEKKLSDISPGLSSARICILAFMALSSFFAAQ  241
            ++ F K+   QF P+++R  F       +    +  SP L      +LA +AL + F+  
Sbjct  1    LDLFFKNFHPQF-PILHRPSFLRDYFELFSSPSNYASPLL------LLAILALGALFSES  53

Query  242  PHVDKIVTA-------DEYAREAQDLLPEMLNESV-TLDGLQALTMLAI----SGDMLSI  289
            P      +          +   A  L+ E  +    +L  LQAL +L +    +GD    
Sbjct  54   PTARSSSSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLH  113

Query  290  ELLLSMATRFVFHLKGNVYPEDVEGV-TLDAKLH--VRNLFWICFTLDKMFSLRTGLQPF  346
                 +A R    L  +  P  V     L  +     R LFW CF LD++ SL  G  P 
Sbjct  114  WRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRRLFWACFYLDRLISLILGRPPL  173

Query  347  IDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYNHTMFLALIRLSLVQSKVYHGLYS  400
            +  ++ DL LP              +          +    L LI+LS + SK+   L S
Sbjct  174  LSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLSKILSKILGSLLS  233

Query  401  FSAQRQ--SDADLLATIRSLDIALEEWR  426
              +          L+ +R L+ AL+ WR
Sbjct  234  IRSTLDQRDLQLKLSWVRELERALDNWR  261



Lambda      K        H        a         alpha
   0.323    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 744225144


Query= TCONS_00043064

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  59.4    9e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 59.4 bits (144),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 32/111 (29%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query  39   RNLFWICFTLDKMFSLRTGLQPFIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYN  92
            R LFW CF LD++ SL  G  P +  ++ DL LP              +          +
Sbjct  151  RRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKS  210

Query  93   HTMFLALIRLSLVQSKVYHGLYSFSAQRQ--SDADLLATIRSLDIALEEWR  141
                L LI+LS + SK+   L S  +          L+ +R L+ AL+ WR
Sbjct  211  IKPPLFLIKLSKILSKILGSLLSIRSTLDQRDLQLKLSWVRELERALDNWR  261



Lambda      K        H        a         alpha
   0.325    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00037450

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  59.4    9e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 59.4 bits (144),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 32/111 (29%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query  39   RNLFWICFTLDKMFSLRTGLQPFIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYN  92
            R LFW CF LD++ SL  G  P +  ++ DL LP              +          +
Sbjct  151  RRLFWACFYLDRLISLILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKS  210

Query  93   HTMFLALIRLSLVQSKVYHGLYSFSAQRQ--SDADLLATIRSLDIALEEWR  141
                L LI+LS + SK+   L S  +          L+ +R L+ AL+ WR
Sbjct  211  IKPPLFLIKLSKILSKILGSLLSIRSTLDQRDLQLKLSWVRELERALDNWR  261



Lambda      K        H        a         alpha
   0.325    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 347190724


Query= TCONS_00037451

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  67.5    2e-13


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 67.5 bits (165),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 45/169 (27%), Positives = 66/169 (39%), Gaps = 12/169 (7%)

Query  43   LQALTMLCICSQAISGDMLSIELLLSMATRFVFHLKGNVYPEDVEGV-TLDAKLH--VRN  99
            LQAL +L +     +GD         +A R    L  +  P  V     L  +     R 
Sbjct  94   LQALLLLELYELG-TGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRR  152

Query  100  LFWICFTLDKMFSLRTGLQPFIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYNHT  153
            LFW CF LD++ SL  G  P +  ++ DL LP              +          +  
Sbjct  153  LFWACFYLDRLISLILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIK  212

Query  154  MFLALIRLSLVQSKVYHGLYSFSAQRQ--SDADLLATIRSLDIALEEWR  200
              L LI+LS + SK+   L S  +          L+ +R L+ AL+ WR
Sbjct  213  PPLFLIKLSKILSKILGSLLSIRSTLDQRDLQLKLSWVRELERALDNWR  261



Lambda      K        H        a         alpha
   0.324    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00043065

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  67.9    7e-14


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 67.9 bits (166),  Expect = 7e-14, Method: Composition-based stats.
 Identities = 45/169 (27%), Positives = 66/169 (39%), Gaps = 12/169 (7%)

Query  43   LQALTMLCICSQAISGDMLSIELLLSMATRFVFHLKGNVYPEDVEGV-TLDAKLH--VRN  99
            LQAL +L +     +GD         +A R    L  +  P  V     L  +     R 
Sbjct  94   LQALLLLELYELG-TGDRKLHWRYHGLAIRLARSLGLHRDPSYVSPSWKLWIEEAELRRR  152

Query  100  LFWICFTLDKMFSLRTGLQPFIDVTNCDLRLP------RMQTVTGPLEGLQPFYRQYNHT  153
            LFW CF LD++ SL  G  P +  ++ DL LP              +          +  
Sbjct  153  LFWACFYLDRLISLILGRPPLLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIK  212

Query  154  MFLALIRLSLVQSKVYHGLYSFSAQRQ--SDADLLATIRSLDIALEEWR  200
              L LI+LS + SK+   L S  +          L+ +R L+ AL+ WR
Sbjct  213  PPLFLIKLSKILSKILGSLLSIRSTLDQRDLQLKLSWVRELERALDNWR  261



Lambda      K        H        a         alpha
   0.324    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00037452

Length=821
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:280534 pfam02386, TrkH, Cation transport protein. This family...  415     1e-137


>CDD:280534 pfam02386, TrkH, Cation transport protein.  This family consists 
of various cation transport proteins (Trk) and V-type sodium 
ATP synthase subunit J or translocating ATPase J EC:3.6.1.34. 
These proteins are involved in active sodium up-take 
utilising ATP in the process. TrkH a member of the family from 
E. coli is a hydrophobic membrane protein and determines 
the specificity and kinetics of cation transport by the TrK 
system in E. coli.
Length=491

 Score = 415 bits (1068),  Expect = 1e-137, Method: Composition-based stats.
 Identities = 191/396 (48%), Positives = 239/396 (60%), Gaps = 18/396 (5%)

Query  358  LHYLSWNATVARNSNFVDLTEEQRDELGGIEYRALKTLAIVLTSYYLFFHILGMVCLVGW  417
            L  LSW  T+ R S F+ L+E Q  ELGG EY +L  L  +L  YY    IL  V    +
Sbjct  110  LAVLSW-PTLGRGSAFLYLSEMQGPELGGKEYPSLSELCKILWVYYFGLTILAFVAYFVF  168

Query  418  IMTT-HWGQVVEQIGQGRPWWGIFTAGSAFNDVGFTLTPDSMTSFQTAVFPLLLMTFLII  476
            I T   + +VV        WW  F + SAF++ GF+LTP+S+ SF T    L + T  II
Sbjct  169  IYTAKGYLEVV------PLWWAFFHSMSAFSNGGFSLTPNSIASFNTNPVILWVATSFII  222

Query  477  IGNTGFPCMLRLIIWVLSKIVPRESAVWEELKFLLDHPRRCFTLLFPRNATWWLFAILVA  536
            +G  GFP  LR+IIW++ KI+ R     E L  LLDHPRRCFTLLF    TW LF  L  
Sbjct  223  LGGIGFPIHLRVIIWIMKKIL-RFKNFKESLSLLLDHPRRCFTLLFASGFTWVLFLELAV  281

Query  537  LNGIDLIFFIILDLNDPTVTSLSPGIRVLVGLFQAASTRTAGFGVVSVADLHPAIQVSYM  596
            LN  D I F++LD     V S+  G RVL   FQ+ STRTAGF VV +++LHPAI+VSY+
Sbjct  282  LNVTDWILFMVLDFGSHVVGSIPKGYRVLNAFFQSVSTRTAGFSVVDISNLHPAIKVSYV  341

Query  597  IMMYISVFP--IAISMRRTNVYEERSLGIY-AGGEDEDEPQTPPSYIGFHLRRQLSFDLW  653
            +MM+I   P   A  ++RT VYEE SLG Y   G+ E    +  S  G HL RQLS DLW
Sbjct  342  LMMFIGGAPGSTAGGIKRTRVYEEFSLGKYEIHGDPEPRAVSTKSIDGKHLTRQLSEDLW  401

Query  654  YVFLGLFIIAIVEGNRLQSEDEYAFQMWAVLFEIVSAYGTVGLSFGYPGVNTSFSGQFKV  713
            Y+FLGLFII I EG +L     ++F  + +LFE+VSAYGTVGLS G    N S S QF  
Sbjct  402  YLFLGLFIICICEGLKLSDVGPFSF--FDILFEVVSAYGTVGLSLGT---NHSLSAQFTT  456

Query  714  LSKLIIIAMQIRGRHRGLPYALDRAILLPSESLKDK  749
            ++KL+IIA+ IRGR  GLP  LD AI LPS+   + 
Sbjct  457  IAKLVIIALMIRGRLEGLPVLLDFAI-LPSDKSWEY  491



Lambda      K        H        a         alpha
   0.321    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1042183164


Query= TCONS_00037454

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426203 pfam01328, Peroxidase_2, Peroxidase, family 2. The per...  152     2e-46


>CDD:426203 pfam01328, Peroxidase_2, Peroxidase, family 2.  The peroxidases 
in this family do not have similarity to other peroxidases.
Length=186

 Score = 152 bits (385),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 69/211 (33%), Positives = 94/211 (45%), Gaps = 33/211 (16%)

Query  42   YCPAGPGHLRAPCPVLNSLANHGIIARSGRNITAAELKAALR-YLGMGIDVITILVNGAF  100
            + P GPG  R PCP LN+LANHG + R G+NIT +EL AALR    M  D+   L     
Sbjct  3    FRPPGPGDSRGPCPGLNTLANHGYLPRDGKNITFSELIAALREGYNMSPDLAAFLALL--  60

Query  101  KVHSDDPKKGALLGLRDKDQTNEDGVPVLNLDQVGRPHAVEHDVSVTRQDRAL-GDCMRV  159
                                    GV   +LD + R + +EHD S+TR+D    GD +  
Sbjct  61   ------------------------GVLTFDLDDLNRHNVIEHDASLTREDAYFGGDNVHF  96

Query  160  NADLLERFLAAPKTERGFSASAFGKYRKTRYNEQKRDNPALEFDRFNHFSGCAELRAVQC  219
            N  L ++ L+   T    +     + R  RY E + +NP   F   +      E      
Sbjct  97   NPTLFDQLLSYG-TGDTLTLDDLAEARVRRYAESRANNPYFTFGPVHALIAYGEAALFLE  155

Query  220  IFGRGFPYRVPEEYIRVLFGEERLPIEEGWK  250
            +FG      V +E +R  FGEER+P  EGW 
Sbjct  156  VFGDE--GTVDKEVLRSFFGEERIP--EGWY  182



Lambda      K        H        a         alpha
   0.323    0.141    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00037453

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426203 pfam01328, Peroxidase_2, Peroxidase, family 2. The per...  150     3e-46


>CDD:426203 pfam01328, Peroxidase_2, Peroxidase, family 2.  The peroxidases 
in this family do not have similarity to other peroxidases.
Length=186

 Score = 150 bits (382),  Expect = 3e-46, Method: Composition-based stats.
 Identities = 69/211 (33%), Positives = 94/211 (45%), Gaps = 33/211 (16%)

Query  19   YCPAGPGHLRAPCPVLNSLANHGIIARSGRNITAAELKAALR-YLGMGIDVITILVNGAF  77
            + P GPG  R PCP LN+LANHG + R G+NIT +EL AALR    M  D+   L     
Sbjct  3    FRPPGPGDSRGPCPGLNTLANHGYLPRDGKNITFSELIAALREGYNMSPDLAAFLALL--  60

Query  78   KVHSDDPKKGALLGLRDKDQTNEDGVPVLNLDQVGRPHAVEHDVSVTRQDRAL-GDCMRV  136
                                    GV   +LD + R + +EHD S+TR+D    GD +  
Sbjct  61   ------------------------GVLTFDLDDLNRHNVIEHDASLTREDAYFGGDNVHF  96

Query  137  NADLLERFLAAPKTERGFSASAFGKYRKTRYNEQKRDNPALEFDRFNHFSGCAELRAVQC  196
            N  L ++ L+   T    +     + R  RY E + +NP   F   +      E      
Sbjct  97   NPTLFDQLLSYG-TGDTLTLDDLAEARVRRYAESRANNPYFTFGPVHALIAYGEAALFLE  155

Query  197  IFGRGFPYRVPEEYIRVLFGEERLPIEEGWK  227
            +FG      V +E +R  FGEER+P  EGW 
Sbjct  156  VFGDE--GTVDKEVLRSFFGEERIP--EGWY  182



Lambda      K        H        a         alpha
   0.322    0.142    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272526298


Query= TCONS_00037455

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426203 pfam01328, Peroxidase_2, Peroxidase, family 2. The per...  152     2e-46


>CDD:426203 pfam01328, Peroxidase_2, Peroxidase, family 2.  The peroxidases 
in this family do not have similarity to other peroxidases.
Length=186

 Score = 152 bits (385),  Expect = 2e-46, Method: Composition-based stats.
 Identities = 69/211 (33%), Positives = 94/211 (45%), Gaps = 33/211 (16%)

Query  42   YCPAGPGHLRAPCPVLNSLANHGIIARSGRNITAAELKAALR-YLGMGIDVITILVNGAF  100
            + P GPG  R PCP LN+LANHG + R G+NIT +EL AALR    M  D+   L     
Sbjct  3    FRPPGPGDSRGPCPGLNTLANHGYLPRDGKNITFSELIAALREGYNMSPDLAAFLALL--  60

Query  101  KVHSDDPKKGALLGLRDKDQTNEDGVPVLNLDQVGRPHAVEHDVSVTRQDRAL-GDCMRV  159
                                    GV   +LD + R + +EHD S+TR+D    GD +  
Sbjct  61   ------------------------GVLTFDLDDLNRHNVIEHDASLTREDAYFGGDNVHF  96

Query  160  NADLLERFLAAPKTERGFSASAFGKYRKTRYNEQKRDNPALEFDRFNHFSGCAELRAVQC  219
            N  L ++ L+   T    +     + R  RY E + +NP   F   +      E      
Sbjct  97   NPTLFDQLLSYG-TGDTLTLDDLAEARVRRYAESRANNPYFTFGPVHALIAYGEAALFLE  155

Query  220  IFGRGFPYRVPEEYIRVLFGEERLPIEEGWK  250
            +FG      V +E +R  FGEER+P  EGW 
Sbjct  156  VFGDE--GTVDKEVLRSFFGEERIP--EGWY  182



Lambda      K        H        a         alpha
   0.323    0.141    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00037456

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00043067

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00037457

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.135    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00037458

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00043068

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00037459

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00043069

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00043070

Length=176


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 162492370


Query= TCONS_00043071

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.136    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00037462

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase famil...  87.8    2e-20


>CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 
2.  Members of this family of prokaryotic proteins include 
putative glucosyltransferases, which are involved in bacterial 
capsule biosynthesis.
Length=192

 Score = 87.8 bits (218),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 45/227 (20%), Positives = 70/227 (31%), Gaps = 44/227 (19%)

Query  272  ADTHFWQDYFTEIRRLHYAHISEADRTLYCCPIIFD-RNSQETPVLVRCADLLWGFAGLS  330
            ADT    D    I       ++  +  +   PI+     +    +         G +   
Sbjct  7    ADTVLPPDCLLGI----ANEMASPEVAIIQGPILPMNVGNYLEELAALFFADDHGKSIPV  62

Query  331  TIYPGTCISIPTSVYSLPLSLAEKIGGWDSDSTAIGEDMHMMLKCYFETAGNVITRPVYV  390
             +  G  +    S   L  S  +++GGWD  S  + ED    L+     AG  +    + 
Sbjct  63   RMALGRVLPFVGSGAFLRRSALQEVGGWDDGS--VSEDFDFGLRLQ--RAGYRV---RFA  115

Query  391  PASQCNVASDTGRGWRRSLDTCRARYRQALRHMWGALDSGFAARRTISYIRSHCRCLFFR  450
            P S           + +S  T R   RQ  R  +G L         I             
Sbjct  116  PYSAV---------YEKSPLTFRDFLRQRRRWAYGCL-----LILLIR------------  149

Query  451  PRHLALIHLLWEAHFLPCHLIILMVFSTIYTLLTPPASLHPTMAWAF  497
                 L  LLW    LP  L++L++FS     L     L   +    
Sbjct  150  -LLGYLGTLLWSG--LPLALLLLLLFSISSLALVL---LLLALLAGL  190



Lambda      K        H        a         alpha
   0.326    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 762158280


Query= TCONS_00043072

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase famil...  87.8    2e-20


>CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 
2.  Members of this family of prokaryotic proteins include 
putative glucosyltransferases, which are involved in bacterial 
capsule biosynthesis.
Length=192

 Score = 87.8 bits (218),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 45/227 (20%), Positives = 70/227 (31%), Gaps = 44/227 (19%)

Query  272  ADTHFWQDYFTEIRRLHYAHISEADRTLYCCPIIFD-RNSQETPVLVRCADLLWGFAGLS  330
            ADT    D    I       ++  +  +   PI+     +    +         G +   
Sbjct  7    ADTVLPPDCLLGI----ANEMASPEVAIIQGPILPMNVGNYLEELAALFFADDHGKSIPV  62

Query  331  TIYPGTCISIPTSVYSLPLSLAEKIGGWDSDSTAIGEDMHMMLKCYFETAGNVITRPVYV  390
             +  G  +    S   L  S  +++GGWD  S  + ED    L+     AG  +    + 
Sbjct  63   RMALGRVLPFVGSGAFLRRSALQEVGGWDDGS--VSEDFDFGLRLQ--RAGYRV---RFA  115

Query  391  PASQCNVASDTGRGWRRSLDTCRARYRQALRHMWGALDSGFAARRTISYIRSHCRCLFFR  450
            P S           + +S  T R   RQ  R  +G L         I             
Sbjct  116  PYSAV---------YEKSPLTFRDFLRQRRRWAYGCL-----LILLIR------------  149

Query  451  PRHLALIHLLWEAHFLPCHLIILMVFSTIYTLLTPPASLHPTMAWAF  497
                 L  LLW    LP  L++L++FS     L     L   +    
Sbjct  150  -LLGYLGTLLWSG--LPLALLLLLLFSISSLALVL---LLLALLAGL  190



Lambda      K        H        a         alpha
   0.326    0.137    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 762158280


Query= TCONS_00043073

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase famil...  95.5    2e-23


>CDD:433365 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 
2.  Members of this family of prokaryotic proteins include 
putative glucosyltransferases, which are involved in bacterial 
capsule biosynthesis.
Length=192

 Score = 95.5 bits (238),  Expect = 2e-23, Method: Composition-based stats.
 Identities = 46/233 (20%), Positives = 74/233 (32%), Gaps = 44/233 (19%)

Query  120  IVTVMDADTHFWQDYFTEIRRLHYAHISEADRTLYCCPIIFD-RNSQETPVLVRCADLLW  178
             + ++DADT    D    I       ++  +  +   PI+     +    +         
Sbjct  1    WILLLDADTVLPPDCLLGI----ANEMASPEVAIIQGPILPMNVGNYLEELAALFFADDH  56

Query  179  GFAGLSTIYPGTCISIPTSVYSLPLSLAEKIGGWDSDSTAIGEDMHMMLKCYFETAGNVI  238
            G +    +  G  +    S   L  S  +++GGWD  S  + ED    L+     AG  +
Sbjct  57   GKSIPVRMALGRVLPFVGSGAFLRRSALQEVGGWDDGS--VSEDFDFGLRLQ--RAGYRV  112

Query  239  TRPVYVPASQCNVASDTGRGWRRSLDTCRARYRQALRHMWGALDSGFAARRTISYIRSHC  298
                + P S           + +S  T R   RQ  R  +G L         I       
Sbjct  113  ---RFAPYSAV---------YEKSPLTFRDFLRQRRRWAYGCL-----LILLIR------  149

Query  299  RCLFFRPRHLALIHLLWEAHFLPCHLIILMVFSTIYTLLTPPASLHPTMAWAF  351
                       L  LLW    LP  L++L++FS     L     L   +    
Sbjct  150  -------LLGYLGTLLWSG--LPLALLLLLLFSISSLALVL---LLLALLAGL  190



Lambda      K        H        a         alpha
   0.327    0.137    0.450    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0707    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00043074

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase. Th...  128     4e-36


>CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase.  This family 
contains hydrolases that break carbon-nitrogen bonds. The 
family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, 
Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. 
Nitrilase-related proteins generally have a conserved 
E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha 
sandwich proteins.
Length=257

 Score = 128 bits (323),  Expect = 4e-36, Method: Composition-based stats.
 Identities = 88/278 (32%), Positives = 129/278 (46%), Gaps = 42/278 (15%)

Query  6    RVAVIQWQIKDLAIEENHTRACNYIREAASQGAELAVLPEYHLNGWAPDDPLWAEQAGEY  65
            RVA++Q       +E N  +A   I EAA  GA+L VLPE  + G+      + E A   
Sbjct  1    RVALVQLPQGFWDLEANLQKALELIEEAARYGADLIVLPELFITGYPCWAH-FLEAAEVG  59

Query  66   K-KYLSAYQALAKELHICLVPGSIVERHETEADGKEGFNLYNTAYFISNDGSILGSYQKK  124
              + L+   ALA++  I +V G I            G  LYNTA  +  DG ++G Y+K 
Sbjct  60   DGETLAGLAALARKNGIAIVIGLIERWLT-------GGRLYNTAVLLDPDGKLVGKYRKL  112

Query  125  NIWHPERP------HLTSSGEAPHEVFDTPIGKVGLLICWDLAFPEAFRELIASGAEVVI  178
            +++   RP       L   G+    VFDTP+GK+G  IC+++ FPE  R L   GAE++I
Sbjct  113  HLFPEPRPPGFRERVLFEPGDG-GTVFDTPLGKIGAAICYEIRFPELLRALALKGAEILI  171

Query  179  IPTFYHQGTCHDASPEALSYNPDSEALF-LESTLTSRCFENTCAIVFVNAAGADEK---F  234
             P+             A +  P S           +R  EN C ++  N  G +E     
Sbjct  172  NPS-------------ARAPFPGSLGPPQWLLLARARALENGCFVIAANQVGGEEDAPWP  218

Query  235  LGMSRVTLPIVGPVGKM----GR-EEGVLVVDMDMGLL  267
             G S     I+ P G++    G  EEGVL+ D+D+ L+
Sbjct  219  YGHSM----IIDPDGRILAGAGEWEEGVLIADIDLALV  252



Lambda      K        H        a         alpha
   0.319    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 336961504


Query= TCONS_00037465

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase. Th...  120     5e-33


>CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase.  This family 
contains hydrolases that break carbon-nitrogen bonds. The 
family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, 
Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. 
Nitrilase-related proteins generally have a conserved 
E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha 
sandwich proteins.
Length=257

 Score = 120 bits (304),  Expect = 5e-33, Method: Composition-based stats.
 Identities = 84/262 (32%), Positives = 123/262 (47%), Gaps = 39/262 (15%)

Query  47   IEENHTRACNYIREAASQGAELAVLPEYHLNGWAPDDPLWAEQAGEYK-KYLSAYQALAK  105
            +E N  +A   I EAA  GA+L VLPE  + G+      + E A     + L+   ALA+
Sbjct  14   LEANLQKALELIEEAARYGADLIVLPELFITGYPCWAH-FLEAAEVGDGETLAGLAALAR  72

Query  106  ELHICLVPGSIVERHETEADGKEGFNLYNTAYFISNDGSILGSYQKKNIWHPERP-----  160
            +  I +V G I            G  LYNTA  +  DG ++G Y+K +++   RP     
Sbjct  73   KNGIAIVIGLIERWLT-------GGRLYNTAVLLDPDGKLVGKYRKLHLFPEPRPPGFRE  125

Query  161  -HLTSSGEAPHEVFDTPIGKVGLLICWDLAFPEAFRELIASGAEVVIIPTFWTCHDASPE  219
              L   G+    VFDTP+GK+G  IC+++ FPE  R L   GAE++I P+          
Sbjct  126  RVLFEPGDG-GTVFDTPLGKIGAAICYEIRFPELLRALALKGAEILINPS----------  174

Query  220  ALSYNPDSEALF-LESTLTSRCFENTCAIVFVNAAGADEK---FLGMSRVTLPIVGPVGK  275
            A +  P S           +R  EN C ++  N  G +E      G S     I+ P G+
Sbjct  175  ARAPFPGSLGPPQWLLLARARALENGCFVIAANQVGGEEDAPWPYGHSM----IIDPDGR  230

Query  276  M----GR-EEGVLVVDMDMGLL  292
            +    G  EEGVL+ D+D+ L+
Sbjct  231  ILAGAGEWEEGVLIADIDLALV  252



Lambda      K        H        a         alpha
   0.318    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 371079994


Query= TCONS_00037463

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase. Th...  129     2e-36


>CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase.  This family 
contains hydrolases that break carbon-nitrogen bonds. The 
family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, 
Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. 
Nitrilase-related proteins generally have a conserved 
E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha 
sandwich proteins.
Length=257

 Score = 129 bits (325),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 86/271 (32%), Positives = 126/271 (46%), Gaps = 31/271 (11%)

Query  6    RVAVIQWQIKDLAIEENHTRACNYIREAASQGAELAVLPEYHLNGWAPDDPLWAEQAGEY  65
            RVA++Q       +E N  +A   I EAA  GA+L VLPE  + G+      + E A   
Sbjct  1    RVALVQLPQGFWDLEANLQKALELIEEAARYGADLIVLPELFITGYPCWAH-FLEAAEVG  59

Query  66   K-KYLSAYQALAKELHICLVPGSIVERHETEADGKEGFNLYNTAYFISNDGSILGSYQKK  124
              + L+   ALA++  I +V G I            G  LYNTA  +  DG ++G Y+K 
Sbjct  60   DGETLAGLAALARKNGIAIVIGLIERWLT-------GGRLYNTAVLLDPDGKLVGKYRKL  112

Query  125  NIWHPERP------HLTSSGEAPHEVFDTPIGKVGLLICWDLAFPEAFRELIASGAEVVI  178
            +++   RP       L   G+    VFDTP+GK+G  IC+++ FPE  R L   GAE++I
Sbjct  113  HLFPEPRPPGFRERVLFEPGDG-GTVFDTPLGKIGAAICYEIRFPELLRALALKGAEILI  171

Query  179  IPTFWTCHDASPEALSYNPDSEALF-LESTLTSRCFENTCAIVFVNAAGADEK---FLGM  234
             P+          A +  P S           +R  EN C ++  N  G +E      G 
Sbjct  172  NPS----------ARAPFPGSLGPPQWLLLARARALENGCFVIAANQVGGEEDAPWPYGH  221

Query  235  SRVTLPIVGPVGKMGR-EEGVLVVDMDMGLL  264
            S +  P    +   G  EEGVL+ D+D+ L+
Sbjct  222  SMIIDPDGRILAGAGEWEEGVLIADIDLALV  252



Lambda      K        H        a         alpha
   0.319    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 332124736


Query= TCONS_00037466

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase. Th...  120     1e-32


>CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase.  This family 
contains hydrolases that break carbon-nitrogen bonds. The 
family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, 
Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. 
Nitrilase-related proteins generally have a conserved 
E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha 
sandwich proteins.
Length=257

 Score = 120 bits (302),  Expect = 1e-32, Method: Composition-based stats.
 Identities = 84/265 (32%), Positives = 124/265 (47%), Gaps = 42/265 (16%)

Query  45   IEENHTRACNYIREAASQGAELAVLPEYHLNGWAPDDPLWAEQAGEYK-KYLSAYQALAK  103
            +E N  +A   I EAA  GA+L VLPE  + G+      + E A     + L+   ALA+
Sbjct  14   LEANLQKALELIEEAARYGADLIVLPELFITGYPCWAH-FLEAAEVGDGETLAGLAALAR  72

Query  104  ELHICLVPGSIVERHETEADGKEGFNLYNTAYFISNDGSILGSYQKKNIWHPERP-----  158
            +  I +V G I         G+    LYNTA  +  DG ++G Y+K +++   RP     
Sbjct  73   KNGIAIVIGLIERWLT---GGR----LYNTAVLLDPDGKLVGKYRKLHLFPEPRPPGFRE  125

Query  159  -HLTSSGEAPHEVFDTPIGKVGLLICWDLAFPEAFRELIASGAEVVIIPTFYHQGTCHDA  217
              L   G+    VFDTP+GK+G  IC+++ FPE  R L   GAE++I P+          
Sbjct  126  RVLFEPGDG-GTVFDTPLGKIGAAICYEIRFPELLRALALKGAEILINPS----------  174

Query  218  SPEALSYNPDSEALF-LESTLTSRCFENTCAIVFVNAAGADEK---FLGMSRVTLPIVGP  273
               A +  P S           +R  EN C ++  N  G +E      G S     I+ P
Sbjct  175  ---ARAPFPGSLGPPQWLLLARARALENGCFVIAANQVGGEEDAPWPYGHSM----IIDP  227

Query  274  VGKM----GR-EEGVLVVDMDMGLL  293
             G++    G  EEGVL+ D+D+ L+
Sbjct  228  DGRILAGAGEWEEGVLIADIDLALV  252



Lambda      K        H        a         alpha
   0.318    0.135    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 372672612


Query= TCONS_00037464

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase. Th...  110     9e-31


>CDD:425873 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase.  This family 
contains hydrolases that break carbon-nitrogen bonds. The 
family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, 
Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. 
Nitrilase-related proteins generally have a conserved 
E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha 
sandwich proteins.
Length=257

 Score = 110 bits (278),  Expect = 9e-31, Method: Composition-based stats.
 Identities = 64/183 (35%), Positives = 93/183 (51%), Gaps = 16/183 (9%)

Query  6    RVAVIQWQIKDLAIEENHTRACNYIREAASQGAELAVLPEYHLNGWAPDDPLWAEQAGEY  65
            RVA++Q       +E N  +A   I EAA  GA+L VLPE  + G+      + E A   
Sbjct  1    RVALVQLPQGFWDLEANLQKALELIEEAARYGADLIVLPELFITGYPCWAH-FLEAAEVG  59

Query  66   K-KYLSAYQALAKELHICLVPGSIVERHETEADGKEGFNLYNTAYFISNDGSILGSYQKK  124
              + L+   ALA++  I +V G I            G  LYNTA  +  DG ++G Y+K 
Sbjct  60   DGETLAGLAALARKNGIAIVIGLIERWLT-------GGRLYNTAVLLDPDGKLVGKYRKL  112

Query  125  NIWHPERP------HLTSSGEAPHEVFDTPIGKVGLLICWDLAFPEAFRELIASGAEVVI  178
            +++   RP       L   G+    VFDTP+GK+G  IC+++ FPE  R L   GAE++I
Sbjct  113  HLFPEPRPPGFRERVLFEPGDG-GTVFDTPLGKIGAAICYEIRFPELLRALALKGAEILI  171

Query  179  IPT  181
             P+
Sbjct  172  NPS  174



Lambda      K        H        a         alpha
   0.319    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00037468

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved ...  92.4    4e-22


>CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved in bacteria 
(DUF2236).  This domain, found in various hypothetical 
bacterial proteins, has no known function. This family contains 
a highly conserved arginine and histidine that may be active 
site residues for an as yet unknown catalytic activity.
Length=223

 Score = 92.4 bits (230),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 80/223 (36%), Gaps = 34/223 (15%)

Query  131  LLGGMSSG--RVVETLARTG-----GFAADVARHRMLETLQHVLQVT-GSVDAMRPGGAG  182
            L GG+ +   +    L   G      F  D    R+  TL +V  VT G+      G   
Sbjct  11   LAGGLRALLLQAAHPLVGAGVADHSNFRTDPWG-RLRRTLTYVATVTFGT------GEEA  63

Query  183  HASSVRVRLLHAAVRSRILDLVKNKPEYYDVDKYGIPINDLDCIATINTFSTSVVWIGLP  242
             A + RVR +HA VR                 +Y   ++    +    T   S +     
Sbjct  64   EALAERVRRMHARVRGTDDSGR----------RYS-ALDPELLLWVHATLYASFLDA-YE  111

Query  243  RQGILLREREIDDYLALWRLMAYYMGAPHEFL-ETRAKAKAMMESLLASEIHPTETSKIL  301
            R G  L + E D Y A WR +   +G P      TRA+  A  + +L  E+  T  ++ L
Sbjct  112  RFGGPLTDAEADRYYAEWRRLGRLLGVPPRDWPATRAEFWAYWDDMLRPELEVTPEAREL  171

Query  302  AQNIILSLENTPPTYASKEFMEAMARHLNGKQLSDKLGLPRPT  344
            A    L      P   +   + A+   L      + LGLP   
Sbjct  172  APVRFL------PARPAGRLLRALTVGLLPPWARELLGLPWTA  208



Lambda      K        H        a         alpha
   0.322    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00037467

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved ...  93.9    1e-22


>CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved in bacteria 
(DUF2236).  This domain, found in various hypothetical 
bacterial proteins, has no known function. This family contains 
a highly conserved arginine and histidine that may be active 
site residues for an as yet unknown catalytic activity.
Length=223

 Score = 93.9 bits (234),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 55/223 (25%), Positives = 80/223 (36%), Gaps = 34/223 (15%)

Query  131  LLGGMSAG--RVVETLARTG-----GFAADVARHRMLETLQHVLQVT-GSVDAMRPGGAG  182
            L GG+ A   +    L   G      F  D    R+  TL +V  VT G+      G   
Sbjct  11   LAGGLRALLLQAAHPLVGAGVADHSNFRTDPWG-RLRRTLTYVATVTFGT------GEEA  63

Query  183  HASSVRVRLLHAAVRSRILDLVKNKPEYYDVDKYGIPINDLDCIATINTFSTSVVWIGLP  242
             A + RVR +HA VR                 +Y   ++    +    T   S +     
Sbjct  64   EALAERVRRMHARVRGTDDSGR----------RYS-ALDPELLLWVHATLYASFLDA-YE  111

Query  243  RQGILLREREIDDYLALWRLMAYYMGAPHEFL-ETRAKAKAMMESLLASEIHPTETSKIL  301
            R G  L + E D Y A WR +   +G P      TRA+  A  + +L  E+  T  ++ L
Sbjct  112  RFGGPLTDAEADRYYAEWRRLGRLLGVPPRDWPATRAEFWAYWDDMLRPELEVTPEAREL  171

Query  302  AQNIILSLENTPPTYASKEFMEAMARHLNGKQLSDKLGLPRPT  344
            A    L      P   +   + A+   L      + LGLP   
Sbjct  172  APVRFL------PARPAGRLLRALTVGLLPPWARELLGLPWTA  208



Lambda      K        H        a         alpha
   0.322    0.137    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00043075

Length=428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved ...  92.4    3e-22


>CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved in bacteria 
(DUF2236).  This domain, found in various hypothetical 
bacterial proteins, has no known function. This family contains 
a highly conserved arginine and histidine that may be active 
site residues for an as yet unknown catalytic activity.
Length=223

 Score = 92.4 bits (230),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 53/216 (25%), Positives = 78/216 (36%), Gaps = 27/216 (13%)

Query  131  LLGGMSDSLPRYSLARTGGFAADVARHRMLETLQHVLQVT-GSVDAMRPGGAGHASSVRV  189
            LL   +  L    +A    F  D    R+  TL +V  VT G+      G    A + RV
Sbjct  18   LLLQAAHPLVGAGVADHSNFRTDPWG-RLRRTLTYVATVTFGT------GEEAEALAERV  70

Query  190  RLLHAAVRSRILDLVKNKPEYYDVDKYGIPINDLDCIATINTFSTSVVWIGLPRQGILLR  249
            R +HA VR                 +Y   ++    +    T   S +     R G  L 
Sbjct  71   RRMHARVRGTDDSGR----------RYS-ALDPELLLWVHATLYASFLDA-YERFGGPLT  118

Query  250  EREIDDYLALWRLMAYYMGAPHEFL-ETRAKAKAMMESLLASEIHPTETSKILAQNIILS  308
            + E D Y A WR +   +G P      TRA+  A  + +L  E+  T  ++ LA    L 
Sbjct  119  DAEADRYYAEWRRLGRLLGVPPRDWPATRAEFWAYWDDMLRPELEVTPEARELAPVRFL-  177

Query  309  LENTPPTYASKEFMEAMARHLNGKQLSDKLGLPRPT  344
                 P   +   + A+   L      + LGLP   
Sbjct  178  -----PARPAGRLLRALTVGLLPPWARELLGLPWTA  208



Lambda      K        H        a         alpha
   0.321    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518391952


Query= TCONS_00043076

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved ...  92.0    7e-22


>CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved in bacteria 
(DUF2236).  This domain, found in various hypothetical 
bacterial proteins, has no known function. This family contains 
a highly conserved arginine and histidine that may be active 
site residues for an as yet unknown catalytic activity.
Length=223

 Score = 92.0 bits (229),  Expect = 7e-22, Method: Composition-based stats.
 Identities = 53/222 (24%), Positives = 76/222 (34%), Gaps = 37/222 (17%)

Query  135  MGSGR-----VVETLARTG-----GFAADVARHRMLETLQHVLQVT-GSVDAMRPGGAGH  183
             G  R         L   G      F  D    R+  TL +V  VT G+      G    
Sbjct  12   AGGLRALLLQAAHPLVGAGVADHSNFRTDPWG-RLRRTLTYVATVTFGT------GEEAE  64

Query  184  ASSVRVRLLHAAVRSRILDLVKNKPEYYDVDKYGIPINDLDCIATINTFSTSVVWIGLPR  243
            A + RVR +HA VR                 +Y   ++    +    T   S +     R
Sbjct  65   ALAERVRRMHARVRGTDDSGR----------RYS-ALDPELLLWVHATLYASFLDA-YER  112

Query  244  QGILLREREIDDYLALWRLMAYYMGAPHEFL-ETRAKAKAMMESLLASEIHPTETSKILA  302
             G  L + E D Y A WR +   +G P      TRA+  A  + +L  E+  T  ++ LA
Sbjct  113  FGGPLTDAEADRYYAEWRRLGRLLGVPPRDWPATRAEFWAYWDDMLRPELEVTPEARELA  172

Query  303  QNIILSLENTPPTYASKEFMEAMARHLNGKQLSDKLGLPRPT  344
                L      P   +   + A+   L      + LGLP   
Sbjct  173  PVRFL------PARPAGRLLRALTVGLLPPWARELLGLPWTA  208



Lambda      K        H        a         alpha
   0.322    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00037470

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved ...  92.4    5e-22


>CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved in bacteria 
(DUF2236).  This domain, found in various hypothetical 
bacterial proteins, has no known function. This family contains 
a highly conserved arginine and histidine that may be active 
site residues for an as yet unknown catalytic activity.
Length=223

 Score = 92.4 bits (230),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 54/236 (23%), Positives = 80/236 (34%), Gaps = 35/236 (15%)

Query  116  YRYGMAVINVLTFQSLLGGMGSGRVVETLARTG-----GFAADVARHRMLETLQHVLQVT  170
            +R       +L    L   +        L   G      F  D    R+  TL +V  VT
Sbjct  1    WRVHGDEGILL-AGGLRALLLQ--AAHPLVGAGVADHSNFRTDPWG-RLRRTLTYVATVT  56

Query  171  -GSVDAMRPGGAGHASSVRVRLLHAAVRSRILDLVKNKPEYYDVDKYGIPINDLDCIATI  229
             G+      G    A + RVR +HA VR                 +Y   ++    +   
Sbjct  57   FGT------GEEAEALAERVRRMHARVRGTDDSGR----------RYS-ALDPELLLWVH  99

Query  230  NTFSTSVVWIGLPRQGILLREREIDDYLALWRLMAYYMGAPHEFL-ETRAKAKAMMESLL  288
             T   S +     R G  L + E D Y A WR +   +G P      TRA+  A  + +L
Sbjct  100  ATLYASFLDA-YERFGGPLTDAEADRYYAEWRRLGRLLGVPPRDWPATRAEFWAYWDDML  158

Query  289  ASEIHPTETSKILAQNIILSLENTPPTYASKEFMEAMARHLNGKQLSDKLGLPRPT  344
              E+  T  ++ LA    L      P   +   + A+   L      + LGLP   
Sbjct  159  RPELEVTPEARELAPVRFL------PARPAGRLLRALTVGLLPPWARELLGLPWTA  208



Lambda      K        H        a         alpha
   0.322    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00037469

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved ...  90.4    5e-22


>CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved in bacteria 
(DUF2236).  This domain, found in various hypothetical 
bacterial proteins, has no known function. This family contains 
a highly conserved arginine and histidine that may be active 
site residues for an as yet unknown catalytic activity.
Length=223

 Score = 90.4 bits (225),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 74/212 (35%), Gaps = 32/212 (15%)

Query  35   VVETLARTG-----GFAADVARHRMLETLQHVLQVT-GSVDAMRPGGAGHASSVRVRLLH  88
                L   G      F  D    R+  TL +V  VT G+      G    A + RVR +H
Sbjct  22   AAHPLVGAGVADHSNFRTDPWG-RLRRTLTYVATVTFGT------GEEAEALAERVRRMH  74

Query  89   AAVRSRILDLVKNKPEYYDVDKYGIPINDLDCIATINTFSTSVVWIGLPRQGILLREREI  148
            A VR                 +Y   ++    +    T   S +     R G  L + E 
Sbjct  75   ARVRGTDDSGR----------RYS-ALDPELLLWVHATLYASFLDA-YERFGGPLTDAEA  122

Query  149  DDYLALWRLMAYYMGAPHEFL-ETRAKAKAMMESLLASEIHPTETSKILAQNIILSLENT  207
            D Y A WR +   +G P      TRA+  A  + +L  E+  T  ++ LA    L     
Sbjct  123  DRYYAEWRRLGRLLGVPPRDWPATRAEFWAYWDDMLRPELEVTPEARELAPVRFL-----  177

Query  208  PPTYASKEFMEAMARHLNGKQLSDKLGLPRPT  239
             P   +   + A+   L      + LGLP   
Sbjct  178  -PARPAGRLLRALTVGLLPPWARELLGLPWTA  208



Lambda      K        H        a         alpha
   0.323    0.138    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00043078

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved ...  87.0    8e-21


>CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved in bacteria 
(DUF2236).  This domain, found in various hypothetical 
bacterial proteins, has no known function. This family contains 
a highly conserved arginine and histidine that may be active 
site residues for an as yet unknown catalytic activity.
Length=223

 Score = 87.0 bits (216),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 46/187 (25%), Positives = 68/187 (36%), Gaps = 26/187 (14%)

Query  2    LETLQHVLQVT-GSVDAMRPGGAGHASSVRVRLLHAAVRSRILDLVKNKPEYYDVDKYGI  60
              TL +V  VT G+      G    A + RVR +HA VR                 +Y  
Sbjct  46   RRTLTYVATVTFGT------GEEAEALAERVRRMHARVRGTDDSGR----------RYS-  88

Query  61   PINDLDCIATINTFSTSVVWIGLPRQGILLREREIDDYLALWRLMAYYMGAPHEFL-ETR  119
             ++    +    T   S +     R G  L + E D Y A WR +   +G P      TR
Sbjct  89   ALDPELLLWVHATLYASFLDA-YERFGGPLTDAEADRYYAEWRRLGRLLGVPPRDWPATR  147

Query  120  AKAKAMMESLLASEIHPTETSKILAQNIILSLENTPPTYASKEFMEAMARHLNGKQLSDK  179
            A+  A  + +L  E+  T  ++ LA    L      P   +   + A+   L      + 
Sbjct  148  AEFWAYWDDMLRPELEVTPEARELAPVRFL------PARPAGRLLRALTVGLLPPWAREL  201

Query  180  LGLPRPT  186
            LGLP   
Sbjct  202  LGLPWTA  208



Lambda      K        H        a         alpha
   0.324    0.139    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00043077

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved ...  92.4    5e-22


>CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved in bacteria 
(DUF2236).  This domain, found in various hypothetical 
bacterial proteins, has no known function. This family contains 
a highly conserved arginine and histidine that may be active 
site residues for an as yet unknown catalytic activity.
Length=223

 Score = 92.4 bits (230),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 79/216 (37%), Gaps = 27/216 (13%)

Query  131  LLGGMSDSLVVETLARTGGFAADVARHRMLETLQHVLQVT-GSVDAMRPGGAGHASSVRV  189
            LL   +  LV   +A    F  D    R+  TL +V  VT G+      G    A + RV
Sbjct  18   LLLQAAHPLVGAGVADHSNFRTDPWG-RLRRTLTYVATVTFGT------GEEAEALAERV  70

Query  190  RLLHAAVRSRILDLVKNKPEYYDVDKYGIPINDLDCIATINTFSTSVVWIGLPRQGILLR  249
            R +HA VR                 +Y   ++    +    T   S +     R G  L 
Sbjct  71   RRMHARVRGTDDSGR----------RYS-ALDPELLLWVHATLYASFLDA-YERFGGPLT  118

Query  250  EREIDDYLALWRLMAYYMGAPHEFL-ETRAKAKAMMESLLASEIHPTETSKILAQNIILS  308
            + E D Y A WR +   +G P      TRA+  A  + +L  E+  T  ++ LA    L 
Sbjct  119  DAEADRYYAEWRRLGRLLGVPPRDWPATRAEFWAYWDDMLRPELEVTPEARELAPVRFL-  177

Query  309  LENTPPTYASKEFMEAMARHLNGKQLSDKLGLPRPT  344
                 P   +   + A+   L      + LGLP   
Sbjct  178  -----PARPAGRLLRALTVGLLPPWARELLGLPWTA  208



Lambda      K        H        a         alpha
   0.322    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565936776


Query= TCONS_00043079

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved ...  89.3    1e-21


>CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved in bacteria 
(DUF2236).  This domain, found in various hypothetical 
bacterial proteins, has no known function. This family contains 
a highly conserved arginine and histidine that may be active 
site residues for an as yet unknown catalytic activity.
Length=223

 Score = 89.3 bits (222),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 50/211 (24%), Positives = 72/211 (34%), Gaps = 30/211 (14%)

Query  6    VVETLARTG-----GFAADVARHRMLETLQHVLQVTGSVDAMRPGGAGHASSVRVRLLHA  60
                L   G      F  D    R+  TL +V  VT        G    A + RVR +HA
Sbjct  22   AAHPLVGAGVADHSNFRTDPWG-RLRRTLTYVATVTFG-----TGEEAEALAERVRRMHA  75

Query  61   AVRSRILDLVKNKPEYYDVDKYGIPINDLDCIATINTFSTSVVWIGLPRQGILLREREID  120
             VR                 +Y   ++    +    T   S +     R G  L + E D
Sbjct  76   RVRGTDDSGR----------RYS-ALDPELLLWVHATLYASFLDA-YERFGGPLTDAEAD  123

Query  121  DYLALWRLMAYYMGAPHEFL-ETRAKAKAMMESLLASEIHPTETSKILAQNIILSLENTP  179
             Y A WR +   +G P      TRA+  A  + +L  E+  T  ++ LA    L      
Sbjct  124  RYYAEWRRLGRLLGVPPRDWPATRAEFWAYWDDMLRPELEVTPEARELAPVRFL------  177

Query  180  PTYASKEFMEAMARHLNGKQLSDKLGLPRPT  210
            P   +   + A+   L      + LGLP   
Sbjct  178  PARPAGRLLRALTVGLLPPWARELLGLPWTA  208



Lambda      K        H        a         alpha
   0.324    0.139    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 379043084


Query= TCONS_00037471

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved ...  89.7    2e-21


>CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved in bacteria 
(DUF2236).  This domain, found in various hypothetical 
bacterial proteins, has no known function. This family contains 
a highly conserved arginine and histidine that may be active 
site residues for an as yet unknown catalytic activity.
Length=223

 Score = 89.7 bits (223),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 53/235 (23%), Positives = 78/235 (33%), Gaps = 33/235 (14%)

Query  116  YRYGMAVINVLTFQSLLGGMGSGRVVETLARTG-----GFAADVARHRMLETLQHVLQVT  170
            +R       +L    L   +        L   G      F  D    R+  TL +V  VT
Sbjct  1    WRVHGDEGILL-AGGLRALLLQ--AAHPLVGAGVADHSNFRTDPWG-RLRRTLTYVATVT  56

Query  171  GSVDAMRPGGAGHASSVRVRLLHAAVRSRILDLVKNKPEYYDVDKYGIPINDLDCIATIN  230
                    G    A + RVR +HA VR                 +Y   ++    +    
Sbjct  57   FG-----TGEEAEALAERVRRMHARVRGTDDSGR----------RYS-ALDPELLLWVHA  100

Query  231  TFSTSVVWIGLPRQGILLREREIDDYLALWRLMAYYMGAPHEFL-ETRAKAKAMMESLLA  289
            T   S +     R G  L + E D Y A WR +   +G P      TRA+  A  + +L 
Sbjct  101  TLYASFLDA-YERFGGPLTDAEADRYYAEWRRLGRLLGVPPRDWPATRAEFWAYWDDMLR  159

Query  290  SEIHPTETSKILAQNIILSLENTPPTYASKEFMEAMARHLNGKQLSDKLGLPRPT  344
             E+  T  ++ LA    L      P   +   + A+   L      + LGLP   
Sbjct  160  PELEVTPEARELAPVRFL------PARPAGRLLRALTVGLLPPWARELLGLPWTA  208



Lambda      K        H        a         alpha
   0.321    0.136    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 464449258


Query= TCONS_00037472

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved ...  93.9    1e-22


>CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved in bacteria 
(DUF2236).  This domain, found in various hypothetical 
bacterial proteins, has no known function. This family contains 
a highly conserved arginine and histidine that may be active 
site residues for an as yet unknown catalytic activity.
Length=223

 Score = 93.9 bits (234),  Expect = 1e-22, Method: Composition-based stats.
 Identities = 53/223 (24%), Positives = 76/223 (34%), Gaps = 37/223 (17%)

Query  131  FLGSGR-----VVETLARTG-----GFAADVARHRMLETLQHVLQVT-GSVDAMRPGGAG  179
              G  R         L   G      F  D    R+  TL +V  VT G+      G   
Sbjct  11   LAGGLRALLLQAAHPLVGAGVADHSNFRTDPWG-RLRRTLTYVATVTFGT------GEEA  63

Query  180  HASSVRVRLLHAAVRSRILDLVKNKPEYYDVDKYGIPINDLDCIATINTFSTSVVWIGLP  239
             A + RVR +HA VR                 +Y   ++    +    T   S +     
Sbjct  64   EALAERVRRMHARVRGTDDSGR----------RYS-ALDPELLLWVHATLYASFLDA-YE  111

Query  240  RQGILLREREIDDYLALWRLMAYYMGAPHEFL-ETRAKAKAMMESLLASEIHPTETSKIL  298
            R G  L + E D Y A WR +   +G P      TRA+  A  + +L  E+  T  ++ L
Sbjct  112  RFGGPLTDAEADRYYAEWRRLGRLLGVPPRDWPATRAEFWAYWDDMLRPELEVTPEAREL  171

Query  299  AQNIILSLENTPPTYASKEFMEAMARHLNGKQLSDKLGLPRPT  341
            A    L      P   +   + A+   L      + LGLP   
Sbjct  172  APVRFL------PARPAGRLLRALTVGLLPPWARELLGLPWTA  208



Lambda      K        H        a         alpha
   0.322    0.137    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 561335664


Query= TCONS_00037473

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved ...  87.4    8e-22


>CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved in bacteria 
(DUF2236).  This domain, found in various hypothetical 
bacterial proteins, has no known function. This family contains 
a highly conserved arginine and histidine that may be active 
site residues for an as yet unknown catalytic activity.
Length=223

 Score = 87.4 bits (217),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 70/198 (35%), Gaps = 25/198 (13%)

Query  14   GGFAADVARHRMLETLQHVLQVTGSVDAMRPGGAGHASSVRVRLLHAAVRSRILDLVKNK  73
              F  D    R+  TL +V  VT        G    A + RVR +HA VR          
Sbjct  35   SNFRTDPWG-RLRRTLTYVATVTFG-----TGEEAEALAERVRRMHARVRGTDDSGR---  85

Query  74   PEYYDVDKYGIPINDLDCIATINTFSTSVVWIGLPRQGILLREREIDDYLALWRLMAYYM  133
                   +Y   ++    +    T   S +     R G  L + E D Y A WR +   +
Sbjct  86   -------RYS-ALDPELLLWVHATLYASFLDA-YERFGGPLTDAEADRYYAEWRRLGRLL  136

Query  134  GAPHEFL-ETRAKAKAMMESLLASEIHPTETSKILAQNIILSLENTPPTYASKEFMEAMA  192
            G P      TRA+  A  + +L  E+  T  ++ LA    L      P   +   + A+ 
Sbjct  137  GVPPRDWPATRAEFWAYWDDMLRPELEVTPEARELAPVRFL------PARPAGRLLRALT  190

Query  193  RHLNGKQLSDKLGLPRPT  210
              L      + LGLP   
Sbjct  191  VGLLPPWARELLGLPWTA  208



Lambda      K        H        a         alpha
   0.320    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00043080

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved ...  87.0    8e-21


>CDD:462938 pfam09995, DUF2236, Uncharacterized protein conserved in bacteria 
(DUF2236).  This domain, found in various hypothetical 
bacterial proteins, has no known function. This family contains 
a highly conserved arginine and histidine that may be active 
site residues for an as yet unknown catalytic activity.
Length=223

 Score = 87.0 bits (216),  Expect = 8e-21, Method: Composition-based stats.
 Identities = 46/187 (25%), Positives = 68/187 (36%), Gaps = 26/187 (14%)

Query  2    LETLQHVLQVT-GSVDAMRPGGAGHASSVRVRLLHAAVRSRILDLVKNKPEYYDVDKYGI  60
              TL +V  VT G+      G    A + RVR +HA VR                 +Y  
Sbjct  46   RRTLTYVATVTFGT------GEEAEALAERVRRMHARVRGTDDSGR----------RYS-  88

Query  61   PINDLDCIATINTFSTSVVWIGLPRQGILLREREIDDYLALWRLMAYYMGAPHEFL-ETR  119
             ++    +    T   S +     R G  L + E D Y A WR +   +G P      TR
Sbjct  89   ALDPELLLWVHATLYASFLDA-YERFGGPLTDAEADRYYAEWRRLGRLLGVPPRDWPATR  147

Query  120  AKAKAMMESLLASEIHPTETSKILAQNIILSLENTPPTYASKEFMEAMARHLNGKQLSDK  179
            A+  A  + +L  E+  T  ++ LA    L      P   +   + A+   L      + 
Sbjct  148  AEFWAYWDDMLRPELEVTPEARELAPVRFL------PARPAGRLLRALTVGLLPPWAREL  201

Query  180  LGLPRPT  186
            LGLP   
Sbjct  202  LGLPWTA  208



Lambda      K        H        a         alpha
   0.324    0.139    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00043081

Length=614


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.130    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 780091416


Query= TCONS_00037475

Length=283


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 317614432


Query= TCONS_00037474

Length=422


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 517262886


Query= TCONS_00037477

Length=209


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 210567420


Query= TCONS_00037482

Length=374


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 449872280


Query= TCONS_00037478

Length=384


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.129    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458235890


Query= TCONS_00037479

Length=634


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 797861390


Query= TCONS_00043082

Length=598


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756180568


Query= TCONS_00037481

Length=578


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0818    0.140     1.90     42.6     43.6 

Effective search space used: 726292008


Query= TCONS_00037483

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432197 pfam11931, DUF3449, Domain of unknown function (DUF344...  246     2e-81
CDD:465279 pfam16837, SF3A3, Pre-mRNA-splicing factor SF3A3, of S...  85.3    2e-21
CDD:463461 pfam12108, SF3a60_bindingd, Splicing factor SF3a60 bin...  55.9    3e-11


>CDD:432197 pfam11931, DUF3449, Domain of unknown function (DUF3449).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
181 to 207 amino acids in length. This domain has two conserved 
sequence motifs: PIP and CEICG. The domain carries a zinc-finger 
domain of the C2H2-type.
Length=120

 Score = 246 bits (631),  Expect = 2e-81, Method: Composition-based stats.
 Identities = 77/121 (64%), Positives = 100/121 (83%), Gaps = 1/121 (1%)

Query  384  KLPLAWDGKPIPYWLYKLHGLGVEYPCEICGNFVYMGRRAFDKHFSEALHIFGLKCLGIT  443
             LPL WDGKPIPYWLYKLHGLGVEY CEICGN+VY GR+AF+KHF E  H +GL+CLGI 
Sbjct  1    NLPLGWDGKPIPYWLYKLHGLGVEYKCEICGNYVYKGRKAFEKHFQEWRHAYGLRCLGIP  60

Query  444  SNTNLFREITRIEDAIKLWEKLEQDRKKERESRENVVQMEDAEGNVMPERIYLDLQKQGI  503
             NT  F+EIT+I+DA++LWEKL++ +KKE+   ++  ++ED EGNVM +++Y DL+KQG+
Sbjct  61   -NTKHFKEITKIDDALELWEKLKKQKKKEKFKSDDEEEVEDEEGNVMSKKVYEDLKKQGL  119

Query  504  L  504
            L
Sbjct  120  L  120


>CDD:465279 pfam16837, SF3A3, Pre-mRNA-splicing factor SF3A3, of SF3a complex, 
Prp9.  SF3A3 is one of the components of the SF3a splicing 
factor complex of the mature U2 snRNP (small nuclear ribonucleoprotein 
particle). In yeast, SF3a shows a bifurcated 
assembly structure of three subunits, Prp9 (subunit 3), Prp11 
(subunit 2) and Prp21 (subunit 1). Prp9 and Prp21 were not 
thought to interact with each other but the alpha1 helix of 
Prp9 does make important contacts with the SURP2 domain of 
Prp21, thus the two do interact via a bidentate-binding mode. 
Prp9 harbours a major binding site for stem-loop IIa of U2 
snRNA.
Length=50

 Score = 85.3 bits (212),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query  126  MFSGEEAYGQFLDLTTLHEDYLNLPGVKRLTYIQYLDVFDSFVPPHLLIKRANK  179
            MFSGEE YG++LDL  LHE+YLNL  VKR++Y+QYL  FD F      I R +K
Sbjct  1    MFSGEEQYGRYLDLHELHEEYLNLKKVKRVSYLQYLSSFDKFAD----IPRVDK  50


>CDD:463461 pfam12108, SF3a60_bindingd, Splicing factor SF3a60 binding domain. 
 This domain is found in eukaryotes. This domain is about 
30 amino acids in length. This domain has a single completely 
conserved residue Y that may be functionally important. 
SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. 
This domain is the binding site of SF3a60 for SF3a120. The SF3a 
complex is part of the spliceosome, a protein complex involved 
in splicing mRNA after transcription.
Length=27

 Score = 55.9 bits (136),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 17/27 (63%), Positives = 23/27 (85%), Gaps = 0/27 (0%)

Query  72  TISTGEQFDEFYRQLDEIKDFHKRYPN  98
           +IS G+ F EFY++L EIKDFH++YPN
Sbjct  1   SISGGDPFAEFYKRLKEIKDFHRKYPN  27



Lambda      K        H        a         alpha
   0.317    0.136    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 625309258


Query= TCONS_00037484

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432197 pfam11931, DUF3449, Domain of unknown function (DUF344...  232     2e-75
CDD:465279 pfam16837, SF3A3, Pre-mRNA-splicing factor SF3A3, of S...  85.3    2e-21
CDD:463461 pfam12108, SF3a60_bindingd, Splicing factor SF3a60 bin...  56.3    3e-11


>CDD:432197 pfam11931, DUF3449, Domain of unknown function (DUF3449).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
181 to 207 amino acids in length. This domain has two conserved 
sequence motifs: PIP and CEICG. The domain carries a zinc-finger 
domain of the C2H2-type.
Length=120

 Score = 232 bits (594),  Expect = 2e-75, Method: Composition-based stats.
 Identities = 71/114 (62%), Positives = 93/114 (82%), Gaps = 1/114 (1%)

Query  384  KLPLAWDGKPIPYWLYKLHGLGVEYPCEICGNFVYMGRRAFDKHFSEALHIFGLKCLGIT  443
             LPL WDGKPIPYWLYKLHGLGVEY CEICGN+VY GR+AF+KHF E  H +GL+CLGI 
Sbjct  1    NLPLGWDGKPIPYWLYKLHGLGVEYKCEICGNYVYKGRKAFEKHFQEWRHAYGLRCLGIP  60

Query  444  SNTNLFREITRIEDAIKLWEKLEQDRKKERESRENVVQMEDAEGNVMPERIYLE  497
             NT  F+EIT+I+DA++LWEKL++ +KKE+   ++  ++ED EGNVM +++Y +
Sbjct  61   -NTKHFKEITKIDDALELWEKLKKQKKKEKFKSDDEEEVEDEEGNVMSKKVYED  113


>CDD:465279 pfam16837, SF3A3, Pre-mRNA-splicing factor SF3A3, of SF3a complex, 
Prp9.  SF3A3 is one of the components of the SF3a splicing 
factor complex of the mature U2 snRNP (small nuclear ribonucleoprotein 
particle). In yeast, SF3a shows a bifurcated 
assembly structure of three subunits, Prp9 (subunit 3), Prp11 
(subunit 2) and Prp21 (subunit 1). Prp9 and Prp21 were not 
thought to interact with each other but the alpha1 helix of 
Prp9 does make important contacts with the SURP2 domain of 
Prp21, thus the two do interact via a bidentate-binding mode. 
Prp9 harbours a major binding site for stem-loop IIa of U2 
snRNA.
Length=50

 Score = 85.3 bits (212),  Expect = 2e-21, Method: Composition-based stats.
 Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query  126  MFSGEEAYGQFLDLTTLHEDYLNLPGVKRLTYIQYLDVFDSFVPPHLLIKRANK  179
            MFSGEE YG++LDL  LHE+YLNL  VKR++Y+QYL  FD F      I R +K
Sbjct  1    MFSGEEQYGRYLDLHELHEEYLNLKKVKRVSYLQYLSSFDKFAD----IPRVDK  50


>CDD:463461 pfam12108, SF3a60_bindingd, Splicing factor SF3a60 binding domain. 
 This domain is found in eukaryotes. This domain is about 
30 amino acids in length. This domain has a single completely 
conserved residue Y that may be functionally important. 
SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. 
This domain is the binding site of SF3a60 for SF3a120. The SF3a 
complex is part of the spliceosome, a protein complex involved 
in splicing mRNA after transcription.
Length=27

 Score = 56.3 bits (137),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 17/27 (63%), Positives = 23/27 (85%), Gaps = 0/27 (0%)

Query  72  TISTGEQFDEFYRQLDEIKDFHKRYPN  98
           +IS G+ F EFY++L EIKDFH++YPN
Sbjct  1   SISGGDPFAEFYKRLKEIKDFHRKYPN  27



Lambda      K        H        a         alpha
   0.317    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 682843766


Query= TCONS_00037485

Length=86
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:432197 pfam11931, DUF3449, Domain of unknown function (DUF344...  149     2e-49


>CDD:432197 pfam11931, DUF3449, Domain of unknown function (DUF3449).  This 
presumed domain is functionally uncharacterized. This domain 
is found in eukaryotes. This domain is typically between 
181 to 207 amino acids in length. This domain has two conserved 
sequence motifs: PIP and CEICG. The domain carries a zinc-finger 
domain of the C2H2-type.
Length=120

 Score = 149 bits (380),  Expect = 2e-49, Method: Composition-based stats.
 Identities = 46/86 (53%), Positives = 68/86 (79%), Gaps = 1/86 (1%)

Query  1    MGRRAFDKHFSEALHIFGLKCLGITSNTNLFREITRIEDAIKLWEKLEQDRKKERESREN  60
             GR+AF+KHF E  H +GL+CLGI  NT  F+EIT+I+DA++LWEKL++ +KKE+   ++
Sbjct  36   KGRKAFEKHFQEWRHAYGLRCLGIP-NTKHFKEITKIDDALELWEKLKKQKKKEKFKSDD  94

Query  61   VVQMEDAEGNVMPERIYLDLQKQGIL  86
              ++ED EGNVM +++Y DL+KQG+L
Sbjct  95   EEEVEDEEGNVMSKKVYEDLKKQGLL  120



Lambda      K        H        a         alpha
   0.320    0.137    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83492064


Query= TCONS_00037487

Length=980
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase do...  109     1e-27
CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus. This...  70.3    2e-14


>CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain.  
This domain belongs to a more diverse superfamily, including 
pfam01331 and pfam01653.
Length=203

 Score = 109 bits (274),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 56/211 (27%), Positives = 89/211 (42%), Gaps = 29/211 (14%)

Query  282  MSVERKYDGEYCQIHIDLTKRPNPIQIFSKSGKDSTDDRAGIHAVVKDSLSIGKSECKFS  341
               E KYDGE  QIH D  +    +++FS++ ++ T     I   +K++    +      
Sbjct  21   FIAEYKYDGERAQIHKDGDE----VKLFSRNLENITRHYPEIVEALKEAFKPDE------  70

Query  342  RQCILEGELVVWNDNHGRIADFHKLRKFIARSGTYIGIDNDSPPQPYEHLMIVFFDILLL  401
            +  IL+GE+V  +   G I  F  L     +      +    P        +  FD+L L
Sbjct  71   KSFILDGEIVAVDPETGEILPFQVLADRKKKKVDVEELAEKVPVC------LFVFDLLYL  124

Query  402  DDDICLRKPHRERRLLLKNVVKVIDGYADIAEQHIVEFSHPSGRSRLETIFSKAVTERWE  461
            D +     P RERR LL+ + K I G   +AE  +            +    +A++E  E
Sbjct  125  DGEDLTDLPLRERRKLLEEIFKEIPGRIQLAESIVT-----KDVEEAQEFLEEAISEGLE  179

Query  462  GLVLKGCEDPYVSIFPGSENGS-GGRWIKLK  491
            GLV+K  +  Y       E G  G  W+K+K
Sbjct  180  GLVVKDPDSTY-------EPGKRGKNWLKIK  203


>CDD:461387 pfam04675, DNA_ligase_A_N, DNA ligase N-terminus.  This region 
is found in many but not all ATP-dependent DNA ligase enzymes 
(EC:6.5.1.1). It is thought to be involved in DNA binding 
and in catalysis. In human DNA ligase I, and in Saccharomyces 
cerevisiae, this region was necessary for catalysis, and 
separated from the amino terminus by targeting elements. In 
vaccinia virus this region was not essential for catalysis, 
but deletion decreases the affinity for nicked DNA and decreased 
the rate of strand joining at a step subsequent to enzyme-adenylate 
formation.
Length=174

 Score = 70.3 bits (173),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 42/183 (23%), Positives = 77/183 (42%), Gaps = 25/183 (14%)

Query  4    KFTYLCDLLSELERNRVLKASTAAKVSNPDHRAVTRWFAQHARRIHASDTDRIALLSCMF  63
             F+ L +L  ++E      +S   K +      +  +F      I A   D    L  + 
Sbjct  1    PFSLLAELFEKIEAT---TSSRLEKTA-----ILANFFRSV---IGAGPEDLYPALRLLL  49

Query  64   PEKRTDRVYWLQCTNLSRVIGRCLLLGSDRRQELEQWRVAGGADLGQCVENVMRQAEFDI  123
            P+    R Y +    L++ I   L  G  +    + +R AG  DLG+  E V+ +     
Sbjct  50   PDYD-GREYGIGEKLLAKAIAEAL--GLSKDSIKDAYRKAG--DLGEVAEEVLSKRSTLF  104

Query  124  NSGQEVTVEEIDLALNKIASRCRFSGSRVRRQHSAVDVEDTLRPLYRRMSSRDAKWLTRM  183
                 +T++E++  L+K+A+     GS+  +          L+ L +R +  +AK+L R+
Sbjct  105  KPS-PLTIDEVNELLDKLAAASG-KGSQDEKI-------KILKKLLKRATPEEAKYLIRI  155

Query  184  ILK  186
            IL 
Sbjct  156  ILG  158



Lambda      K        H        a         alpha
   0.319    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1251634384


Query= TCONS_00037486

Length=912
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase do...  109     1e-27


>CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain.  
This domain belongs to a more diverse superfamily, including 
pfam01331 and pfam01653.
Length=203

 Score = 109 bits (274),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 56/211 (27%), Positives = 89/211 (42%), Gaps = 29/211 (14%)

Query  242  MSVERKYDGEYCQIHIDLTKRPNPIQIFSKSGKDSTDDRAGIHAVVKDSLSIGKSECKFS  301
               E KYDGE  QIH D  +    +++FS++ ++ T     I   +K++    +      
Sbjct  21   FIAEYKYDGERAQIHKDGDE----VKLFSRNLENITRHYPEIVEALKEAFKPDE------  70

Query  302  RQCILEGELVVWNDNHGRIADFHKLRKFIARSGTYIGIDNDSPPQPYEHLMIVFFDILLL  361
            +  IL+GE+V  +   G I  F  L     +      +    P        +  FD+L L
Sbjct  71   KSFILDGEIVAVDPETGEILPFQVLADRKKKKVDVEELAEKVPVC------LFVFDLLYL  124

Query  362  DDDICLRKPHRERRLLLKNVVKVIDGYADIAEQHIVEFSHPSGRSRLETIFSKAVTERWE  421
            D +     P RERR LL+ + K I G   +AE  +            +    +A++E  E
Sbjct  125  DGEDLTDLPLRERRKLLEEIFKEIPGRIQLAESIVT-----KDVEEAQEFLEEAISEGLE  179

Query  422  GLVLKGCEDPYVSIFPGSENGS-GGRWIKLK  451
            GLV+K  +  Y       E G  G  W+K+K
Sbjct  180  GLVVKDPDSTY-------EPGKRGKNWLKIK  203



Lambda      K        H        a         alpha
   0.318    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1172814938


Query= TCONS_00037488

Length=677
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase do...  63.1    9e-12


>CDD:426028 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain.  
This domain belongs to a more diverse superfamily, including 
pfam01331 and pfam01653.
Length=203

 Score = 63.1 bits (154),  Expect = 9e-12, Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 13/100 (13%)

Query  2    IVFFDILLLDDDICLRKPHRERRLLLKNVVKVIDGYADIAEQHIVEFSHPSGRSRLETIF  61
            +  FD+L LD +     P RERR LL+ + K I G   +AE  +            +   
Sbjct  116  LFVFDLLYLDGEDLTDLPLRERRKLLEEIFKEIPGRIQLAESIVT-----KDVEEAQEFL  170

Query  62   SKAVTERWEGLVLKGCEDPYVSIFPGSENGS-GGRWIKLK  100
             +A++E  EGLV+K  +  Y       E G  G  W+K+K
Sbjct  171  EEAISEGLEGLVVKDPDSTY-------EPGKRGKNWLKIK  203



Lambda      K        H        a         alpha
   0.316    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 861277360


Query= TCONS_00037490

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          218     7e-72


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 218 bits (558),  Expect = 7e-72, Method: Composition-based stats.
 Identities = 85/204 (42%), Positives = 114/204 (56%), Gaps = 13/204 (6%)

Query  1    MMDSSITRRGQPCWYRHPGVGLIAINDAFMLESGIYVILKKHFRSHPAYVDFLELFHETT  60
            +MD+S  RRGQP W+R  G   IAIND   L +  + +L K F       + LELF E T
Sbjct  60   IMDNSDLRRGQPTWHRIFGNA-IAINDGDYLYALAFQLLAKLFP----NPELLELFSEVT  114

Query  61   WQTELGQLCDLITAPEDKVDLDNFSMEKYMFIVTYKTAYYSFYLPVALALLYLELATPEN  120
             QT  GQ  DL+   +D +     + E+Y+ IV YKTAY  F L V L  +       E 
Sbjct  115  LQTAEGQGLDLLWRNDDDLSC---TEEEYLEIVKYKTAY-LFALAVKLGAILSGA-DDEV  169

Query  121  LQQTHDILIPLGQYFQVQDDYLDAYGDPAVIGKI-GTDIQDNKCSWLINQALQRCNTEQR  179
            ++   D  + LG  FQ+QDDYLD +GDP V+GK  GTDI + KC+W +  AL+R   EQR
Sbjct  170  IEALKDYGLNLGLAFQIQDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALER-TPEQR  228

Query  180  KLLDTAYGRKDSELEAKVKALYKE  203
            K+L   YG++  +   KVK  Y+ 
Sbjct  229  KILLEIYGKRPED-VEKVKEAYEL  251



Lambda      K        H        a         alpha
   0.320    0.138    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 270894404


Query= TCONS_00037491

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          277     2e-93


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 277 bits (710),  Expect = 2e-93, Method: Composition-based stats.
 Identities = 108/267 (40%), Positives = 141/267 (53%), Gaps = 18/267 (7%)

Query  35   VKWFEQVLNVNV-PGGKLNRGLSVPDTGIALLQKPLTDEQFKHLSILGWLTELLQAFFLV  93
             K   + L+  V  GGK  R L V  +  AL       E  +   +L W  ELL A  LV
Sbjct  1    EKLLYEPLDYLVSAGGKRIRPLLVLLSAEALGG----PEDLEKAIVLAWAVELLHAASLV  56

Query  94   SDDMMDSSITRRGQPCWYRHPGVGLIAINDAFMLESGIYVILKKHFRSHPAYVDFLELFH  153
             DD+MD+S  RRGQP W+R  G   IAIND   L +  + +L K F       + LELF 
Sbjct  57   HDDIMDNSDLRRGQPTWHRIFGNA-IAINDGDYLYALAFQLLAKLFP----NPELLELFS  111

Query  154  ETTWQTELGQLCDLITAPEDKVDLDNFSMEKYMFIVTYKTAYYSFYLPVALALLYLELAT  213
            E T QT  GQ  DL+   +D +     + E+Y+ IV YKTA Y F L V      L  A 
Sbjct  112  EVTLQTAEGQGLDLLWRNDDDLSC---TEEEYLEIVKYKTA-YLFALAV-KLGAILSGAD  166

Query  214  PENLQQTHDILIPLGQYFQVQDDYLDAYGDPAVIGKI-GTDIQDNKCSWLINQALQRCNT  272
             E ++   D  + LG  FQ+QDDYLD +GDP V+GK  GTDI + KC+W +  AL+R   
Sbjct  167  DEVIEALKDYGLNLGLAFQIQDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALER-TP  225

Query  273  EQRKLLDTAYGRKDSELEAKVKALYKE  299
            EQRK+L   YG++  +   KVK  Y+ 
Sbjct  226  EQRKILLEIYGKRPED-VEKVKEAYEL  251



Lambda      K        H        a         alpha
   0.320    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00037492

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase          277     2e-93


>CDD:459773 pfam00348, polyprenyl_synt, Polyprenyl synthetase.  
Length=251

 Score = 277 bits (710),  Expect = 2e-93, Method: Composition-based stats.
 Identities = 108/267 (40%), Positives = 141/267 (53%), Gaps = 18/267 (7%)

Query  35   VKWFEQVLNVNV-PGGKLNRGLSVPDTGIALLQKPLTDEQFKHLSILGWLTELLQAFFLV  93
             K   + L+  V  GGK  R L V  +  AL       E  +   +L W  ELL A  LV
Sbjct  1    EKLLYEPLDYLVSAGGKRIRPLLVLLSAEALGG----PEDLEKAIVLAWAVELLHAASLV  56

Query  94   SDDMMDSSITRRGQPCWYRHPGVGLIAINDAFMLESGIYVILKKHFRSHPAYVDFLELFH  153
             DD+MD+S  RRGQP W+R  G   IAIND   L +  + +L K F       + LELF 
Sbjct  57   HDDIMDNSDLRRGQPTWHRIFGNA-IAINDGDYLYALAFQLLAKLFP----NPELLELFS  111

Query  154  ETTWQTELGQLCDLITAPEDKVDLDNFSMEKYMFIVTYKTAYYSFYLPVALALLYLELAT  213
            E T QT  GQ  DL+   +D +     + E+Y+ IV YKTA Y F L V      L  A 
Sbjct  112  EVTLQTAEGQGLDLLWRNDDDLSC---TEEEYLEIVKYKTA-YLFALAV-KLGAILSGAD  166

Query  214  PENLQQTHDILIPLGQYFQVQDDYLDAYGDPAVIGKI-GTDIQDNKCSWLINQALQRCNT  272
             E ++   D  + LG  FQ+QDDYLD +GDP V+GK  GTDI + KC+W +  AL+R   
Sbjct  167  DEVIEALKDYGLNLGLAFQIQDDYLDLFGDPEVLGKPAGTDITEGKCTWPVIHALER-TP  225

Query  273  EQRKLLDTAYGRKDSELEAKVKALYKE  299
            EQRK+L   YG++  +   KVK  Y+ 
Sbjct  226  EQRKILLEIYGKRPED-VEKVKEAYEL  251



Lambda      K        H        a         alpha
   0.320    0.137    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 407401820


Query= TCONS_00037493

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:430398 pfam09084, NMT1, NMT1/THI5 like. This family contains ...  119     3e-34


>CDD:430398 pfam09084, NMT1, NMT1/THI5 like.  This family contains the NMT1 
and THI5 proteins. These proteins are proposed to be required 
for the biosynthesis of the pyrimidine moiety of thiamine. 
They are regulated by thiamine. The protein adopts a fold 
related to the periplasmic binding protein (PBP) family. Both 
pyridoxal-5'-phosphate (PLP) and an iron atom are bound 
to the protein suggesting numerous residues of the active site 
necessary for HMP-P biosynthesis. The yeast protein is a 
dimer and, although exceptionally using PLP as a substrate, 
has notable similarities with enzymes dependent on this molecule 
as a cofactor.
Length=216

 Score = 119 bits (301),  Expect = 3e-34, Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 12/110 (11%)

Query  1    MTADDYTAVRCG-MNVTKAIIRGDIDAGIG-LENVQMVELAEWLASQNRPRDDVQMLRID  58
               DD T V  G MN+  A++ G +DA IG   N + VEL            +   L I 
Sbjct  117  GDPDDVTIVNVGGMNLFPALLTGKVDAAIGGYYNWEGVELKL----------EGVELNIF  166

Query  59   QLAELGCCCFCSILYIANDAFLAANPDKVQKFMRAVKRATDYVLAEPAKA  108
             LA+ G   + S++ I N+AFL  NP+ V+ F+RA  R   Y LA P +A
Sbjct  167  ALADYGVPDYYSLVLITNEAFLKENPELVRAFLRATLRGYQYALAHPEEA  216



Lambda      K        H        a         alpha
   0.321    0.135    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215580930


Query= TCONS_00037494

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.123    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00037495

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462318 pfam07928, Vps54, Vps54-like protein. This family cont...  214     8e-71


>CDD:462318 pfam07928, Vps54, Vps54-like protein.  This family contains various 
proteins that are homologs of the yeast Vps54 protein, 
such as the rat homolog, the human homolog, and the mouse 
homolog. In yeast, Vps54 associates with Vps52 and Vps53 proteins 
to form a trimolecular complex that is involved in protein 
transport between Golgi, endosomal, and vacuolar compartments. 
All Vps54 homologs contain a coiled coil region (not 
found in the region featured in this family) and multiple dileucine 
motifs.
Length=131

 Score = 214 bits (547),  Expect = 8e-71, Method: Composition-based stats.
 Identities = 82/131 (63%), Positives = 98/131 (75%), Gaps = 2/131 (2%)

Query  73   QKYILPECAVAMMKSIEEFQFLMANIPSMIQDIAPGLLESLKFFNSRSSQLILGAGATRS  132
            +K+I+   A+ ++K + ++  L AN PS+  DI   LLE LK FNSR+ QLILGAGATR+
Sbjct  1    EKFIVVNSALLLLKMLSDYLHLAANFPSLASDILSRLLELLKLFNSRTCQLILGAGATRT  60

Query  133  AGLKNITTKHLALSSQALSFIIALVPYIREFVRRHAPSS--PLMGEFDKVKRLYQEHQSG  190
            AGLKNIT KHLAL+SQALSF+IAL+PYIREF RRH       L+ EFDKVKR YQEHQS 
Sbjct  61   AGLKNITAKHLALASQALSFVIALIPYIREFFRRHLGPKQALLLSEFDKVKRDYQEHQSE  120

Query  191  IHEKLVDIMSG  201
            IH KLV IMS 
Sbjct  121  IHSKLVSIMSD  131



Lambda      K        H        a         alpha
   0.316    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00037496

Length=51


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.123    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83203552


Query= TCONS_00037497

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        76.6    9e-18
CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  60.7    2e-12


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 76.6 bits (189),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 39/136 (29%), Positives = 53/136 (39%), Gaps = 7/136 (5%)

Query  195  GADRVWTDDGAVAEQIRDADSGCYYDKVLELVGTATLADSLRCVKKGGVVSLVGRLCENG  254
            GAD V             A  G   D VL+ VG      SLR +  GG +  +G    + 
Sbjct  2    GADEVIDYR---TTDFVQATGGEGVDVVLDTVGGEAFEASLRVLPGGGRLVTIGGPPLSA  58

Query  255  DLEKVDLMELIPSGVKLTVYQGTSEDFMNT-PLDAVLRLIEQGSLKFKIGRVLRMEQIVE  313
             L           G  +          +    L  +  LIE+G L+  I RV  +E+  E
Sbjct  59   GLLLPARKR---GGRGVKYLFLFVRPNLGADILQELADLIEEGKLRPVIDRVFPLEEAAE  115

Query  314  AHRCMEENEAEGKIVI  329
            AHR +E   A GKIV+
Sbjct  116  AHRYLESGRARGKIVL  131


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 60.7 bits (148),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 31/105 (30%), Positives = 42/105 (40%), Gaps = 24/105 (23%)

Query  31   GELRLRIKAFGLNRSDLLARQGRANHPIAYPRIPGIEAVGIID-TAPGLEDTFPPGSTVA  89
            GE+ +++KA G+  SDL   +G  N P+  P I G E  G +    PG+      G  V 
Sbjct  1    GEVLVKVKAAGICGSDLHIYKGG-NPPVKLPLILGHEFAGEVVEVGPGVTG-LKVGDRVV  58

Query  90   ---------------------TAMGGMGTVFDGGYAEYVCVPARQ  113
                                      +G   DGG+AEYV VP R 
Sbjct  59   VEPLIPCGKCEYCREGRYNLCPNGRFLGYDRDGGFAEYVVVPERN  103



Lambda      K        H        a         alpha
   0.319    0.138    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00037498

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        76.6    9e-18
CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  60.7    2e-12


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 76.6 bits (189),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 39/136 (29%), Positives = 53/136 (39%), Gaps = 7/136 (5%)

Query  195  GADRVWTDDGAVAEQIRDADSGCYYDKVLELVGTATLADSLRCVKKGGVVSLVGRLCENG  254
            GAD V             A  G   D VL+ VG      SLR +  GG +  +G    + 
Sbjct  2    GADEVIDYR---TTDFVQATGGEGVDVVLDTVGGEAFEASLRVLPGGGRLVTIGGPPLSA  58

Query  255  DLEKVDLMELIPSGVKLTVYQGTSEDFMNT-PLDAVLRLIEQGSLKFKIGRVLRMEQIVE  313
             L           G  +          +    L  +  LIE+G L+  I RV  +E+  E
Sbjct  59   GLLLPARKR---GGRGVKYLFLFVRPNLGADILQELADLIEEGKLRPVIDRVFPLEEAAE  115

Query  314  AHRCMEENEAEGKIVI  329
            AHR +E   A GKIV+
Sbjct  116  AHRYLESGRARGKIVL  131


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 60.7 bits (148),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 31/105 (30%), Positives = 42/105 (40%), Gaps = 24/105 (23%)

Query  31   GELRLRIKAFGLNRSDLLARQGRANHPIAYPRIPGIEAVGIID-TAPGLEDTFPPGSTVA  89
            GE+ +++KA G+  SDL   +G  N P+  P I G E  G +    PG+      G  V 
Sbjct  1    GEVLVKVKAAGICGSDLHIYKGG-NPPVKLPLILGHEFAGEVVEVGPGVTG-LKVGDRVV  58

Query  90   ---------------------TAMGGMGTVFDGGYAEYVCVPARQ  113
                                      +G   DGG+AEYV VP R 
Sbjct  59   VEPLIPCGKCEYCREGRYNLCPNGRFLGYDRDGGFAEYVVVPERN  103



Lambda      K        H        a         alpha
   0.319    0.138    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00043083

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase        76.6    9e-18
CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like dom...  60.7    2e-12


>CDD:433341 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase.  
Length=131

 Score = 76.6 bits (189),  Expect = 9e-18, Method: Composition-based stats.
 Identities = 39/136 (29%), Positives = 53/136 (39%), Gaps = 7/136 (5%)

Query  195  GADRVWTDDGAVAEQIRDADSGCYYDKVLELVGTATLADSLRCVKKGGVVSLVGRLCENG  254
            GAD V             A  G   D VL+ VG      SLR +  GG +  +G    + 
Sbjct  2    GADEVIDYR---TTDFVQATGGEGVDVVLDTVGGEAFEASLRVLPGGGRLVTIGGPPLSA  58

Query  255  DLEKVDLMELIPSGVKLTVYQGTSEDFMNT-PLDAVLRLIEQGSLKFKIGRVLRMEQIVE  313
             L           G  +          +    L  +  LIE+G L+  I RV  +E+  E
Sbjct  59   GLLLPARKR---GGRGVKYLFLFVRPNLGADILQELADLIEEGKLRPVIDRVFPLEEAAE  115

Query  314  AHRCMEENEAEGKIVI  329
            AHR +E   A GKIV+
Sbjct  116  AHRYLESGRARGKIVL  131


>CDD:400513 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain.  This 
is the catalytic domain of alcohol dehydrogenases. Many 
of them contain an inserted zinc binding domain. This domain 
has a GroES-like structure.
Length=106

 Score = 60.7 bits (148),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 31/105 (30%), Positives = 42/105 (40%), Gaps = 24/105 (23%)

Query  31   GELRLRIKAFGLNRSDLLARQGRANHPIAYPRIPGIEAVGIID-TAPGLEDTFPPGSTVA  89
            GE+ +++KA G+  SDL   +G  N P+  P I G E  G +    PG+      G  V 
Sbjct  1    GEVLVKVKAAGICGSDLHIYKGG-NPPVKLPLILGHEFAGEVVEVGPGVTG-LKVGDRVV  58

Query  90   ---------------------TAMGGMGTVFDGGYAEYVCVPARQ  113
                                      +G   DGG+AEYV VP R 
Sbjct  59   VEPLIPCGKCEYCREGRYNLCPNGRFLGYDRDGGFAEYVVVPERN  103



Lambda      K        H        a         alpha
   0.319    0.138    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00043084

Length=55


***** No hits found *****



Lambda      K        H        a         alpha
   0.327    0.131    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80925544


Query= TCONS_00037499

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462318 pfam07928, Vps54, Vps54-like protein. This family cont...  214     8e-71


>CDD:462318 pfam07928, Vps54, Vps54-like protein.  This family contains various 
proteins that are homologs of the yeast Vps54 protein, 
such as the rat homolog, the human homolog, and the mouse 
homolog. In yeast, Vps54 associates with Vps52 and Vps53 proteins 
to form a trimolecular complex that is involved in protein 
transport between Golgi, endosomal, and vacuolar compartments. 
All Vps54 homologs contain a coiled coil region (not 
found in the region featured in this family) and multiple dileucine 
motifs.
Length=131

 Score = 214 bits (547),  Expect = 8e-71, Method: Composition-based stats.
 Identities = 82/131 (63%), Positives = 98/131 (75%), Gaps = 2/131 (2%)

Query  73   QKYILPECAVAMMKSIEEFQFLMANIPSMIQDIAPGLLESLKFFNSRSSQLILGAGATRS  132
            +K+I+   A+ ++K + ++  L AN PS+  DI   LLE LK FNSR+ QLILGAGATR+
Sbjct  1    EKFIVVNSALLLLKMLSDYLHLAANFPSLASDILSRLLELLKLFNSRTCQLILGAGATRT  60

Query  133  AGLKNITTKHLALSSQALSFIIALVPYIREFVRRHAPSS--PLMGEFDKVKRLYQEHQSG  190
            AGLKNIT KHLAL+SQALSF+IAL+PYIREF RRH       L+ EFDKVKR YQEHQS 
Sbjct  61   AGLKNITAKHLALASQALSFVIALIPYIREFFRRHLGPKQALLLSEFDKVKRDYQEHQSE  120

Query  191  IHEKLVDIMSG  201
            IH KLV IMS 
Sbjct  121  IHSKLVSIMSD  131



Lambda      K        H        a         alpha
   0.316    0.129    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00043085

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462318 pfam07928, Vps54, Vps54-like protein. This family cont...  214     8e-71


>CDD:462318 pfam07928, Vps54, Vps54-like protein.  This family contains various 
proteins that are homologs of the yeast Vps54 protein, 
such as the rat homolog, the human homolog, and the mouse 
homolog. In yeast, Vps54 associates with Vps52 and Vps53 proteins 
to form a trimolecular complex that is involved in protein 
transport between Golgi, endosomal, and vacuolar compartments. 
All Vps54 homologs contain a coiled coil region (not 
found in the region featured in this family) and multiple dileucine 
motifs.
Length=131

 Score = 214 bits (548),  Expect = 8e-71, Method: Composition-based stats.
 Identities = 82/131 (63%), Positives = 98/131 (75%), Gaps = 2/131 (2%)

Query  91   QKYILPECAVAMMKSIEEFQFLMANIPSMIQDIAPGLLESLKFFNSRSSQLILGAGATRS  150
            +K+I+   A+ ++K + ++  L AN PS+  DI   LLE LK FNSR+ QLILGAGATR+
Sbjct  1    EKFIVVNSALLLLKMLSDYLHLAANFPSLASDILSRLLELLKLFNSRTCQLILGAGATRT  60

Query  151  AGLKNITTKHLALSSQALSFIIALVPYIREFVRRHAPSS--PLMGEFDKVKRLYQEHQSG  208
            AGLKNIT KHLAL+SQALSF+IAL+PYIREF RRH       L+ EFDKVKR YQEHQS 
Sbjct  61   AGLKNITAKHLALASQALSFVIALIPYIREFFRRHLGPKQALLLSEFDKVKRDYQEHQSE  120

Query  209  IHEKLVDIMSG  219
            IH KLV IMS 
Sbjct  121  IHSKLVSIMSD  131



Lambda      K        H        a         alpha
   0.318    0.130    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 399536920


Query= TCONS_00037500

Length=899
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462318 pfam07928, Vps54, Vps54-like protein. This family cont...  213     2e-65


>CDD:462318 pfam07928, Vps54, Vps54-like protein.  This family contains various 
proteins that are homologs of the yeast Vps54 protein, 
such as the rat homolog, the human homolog, and the mouse 
homolog. In yeast, Vps54 associates with Vps52 and Vps53 proteins 
to form a trimolecular complex that is involved in protein 
transport between Golgi, endosomal, and vacuolar compartments. 
All Vps54 homologs contain a coiled coil region (not 
found in the region featured in this family) and multiple dileucine 
motifs.
Length=131

 Score = 213 bits (545),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 82/131 (63%), Positives = 98/131 (75%), Gaps = 2/131 (2%)

Query  648  QKYILPECAVAMMKSIEEFQFLMANIPSMIQDIAPGLLESLKFFNSRSSQLILGAGATRS  707
            +K+I+   A+ ++K + ++  L AN PS+  DI   LLE LK FNSR+ QLILGAGATR+
Sbjct  1    EKFIVVNSALLLLKMLSDYLHLAANFPSLASDILSRLLELLKLFNSRTCQLILGAGATRT  60

Query  708  AGLKNITTKHLALSSQALSFIIALVPYIREFVRRHAPSS--PLMGEFDKVKRLYQEHQSG  765
            AGLKNIT KHLAL+SQALSF+IAL+PYIREF RRH       L+ EFDKVKR YQEHQS 
Sbjct  61   AGLKNITAKHLALASQALSFVIALIPYIREFFRRHLGPKQALLLSEFDKVKRDYQEHQSE  120

Query  766  IHEKLVDIMSG  776
            IH KLV IMS 
Sbjct  121  IHSKLVSIMSD  131



Lambda      K        H        a         alpha
   0.315    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1154153256


Query= TCONS_00037501

Length=997
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462318 pfam07928, Vps54, Vps54-like protein. This family cont...  213     2e-65


>CDD:462318 pfam07928, Vps54, Vps54-like protein.  This family contains various 
proteins that are homologs of the yeast Vps54 protein, 
such as the rat homolog, the human homolog, and the mouse 
homolog. In yeast, Vps54 associates with Vps52 and Vps53 proteins 
to form a trimolecular complex that is involved in protein 
transport between Golgi, endosomal, and vacuolar compartments. 
All Vps54 homologs contain a coiled coil region (not 
found in the region featured in this family) and multiple dileucine 
motifs.
Length=131

 Score = 213 bits (546),  Expect = 2e-65, Method: Composition-based stats.
 Identities = 82/131 (63%), Positives = 98/131 (75%), Gaps = 2/131 (2%)

Query  746  QKYILPECAVAMMKSIEEFQFLMANIPSMIQDIAPGLLESLKFFNSRSSQLILGAGATRS  805
            +K+I+   A+ ++K + ++  L AN PS+  DI   LLE LK FNSR+ QLILGAGATR+
Sbjct  1    EKFIVVNSALLLLKMLSDYLHLAANFPSLASDILSRLLELLKLFNSRTCQLILGAGATRT  60

Query  806  AGLKNITTKHLALSSQALSFIIALVPYIREFVRRHAPSS--PLMGEFDKVKRLYQEHQSG  863
            AGLKNIT KHLAL+SQALSF+IAL+PYIREF RRH       L+ EFDKVKR YQEHQS 
Sbjct  61   AGLKNITAKHLALASQALSFVIALIPYIREFFRRHLGPKQALLLSEFDKVKRDYQEHQSE  120

Query  864  IHEKLVDIMSG  874
            IH KLV IMS 
Sbjct  121  IHSKLVSIMSD  131



Lambda      K        H        a         alpha
   0.315    0.129    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1275704276


Query= TCONS_00043086

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00037502

Length=84


***** No hits found *****



Lambda      K        H        a         alpha
   0.307    0.131    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00037503

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.309    0.132    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00043087

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459830 pfam00493, MCM, MCM2/3/5 family                            414     5e-146
CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain. This entry rep...  128     1e-36 


>CDD:459830 pfam00493, MCM, MCM2/3/5 family.  
Length=224

 Score = 414 bits (1066),  Expect = 5e-146, Method: Composition-based stats.
 Identities = 148/216 (69%), Positives = 179/216 (83%), Gaps = 0/216 (0%)

Query  55   SRREDLYEALARSIAPSIWGNLDIKKAIVCLLMGGSKKILPDGMKLRGDINVLLLGDPGT  114
            ++R D+Y+ LA SIAPSI+G+ D+KKAI+  L GG KKILPDG +LRGDINVLL+GDPGT
Sbjct  9    AKRPDIYDKLADSIAPSIYGHEDVKKAILLQLFGGVKKILPDGTRLRGDINVLLVGDPGT  68

Query  115  AKSQLLKFTEKVSPIAIYTSGKGSSAAGLTASVQRDPQTREFYLEGGAMVLADGGVVCID  174
            AKSQLLK+ EK++P A+YTSGKGSSAAGLTA+V RDP T EF LE GA+VLADGGV CID
Sbjct  69   AKSQLLKYVEKIAPRAVYTSGKGSSAAGLTAAVVRDPVTGEFVLEAGALVLADGGVCCID  128

Query  175  EFDKMRDEDRVAIHEAMEQQTISIAKAGITTILNSRTSVLAAANPIFGRYDDLKTPGENI  234
            EFDKM DEDRVA+HEAMEQQTISIAKAGI   LN+R S+LAAANPIFGRYD  K+  ENI
Sbjct  129  EFDKMNDEDRVALHEAMEQQTISIAKAGIVATLNARCSILAAANPIFGRYDPKKSIAENI  188

Query  235  DFQTTILSRFDMIFIVRDDHDRNRDENIARHVMGVH  270
            +    +LSRFD+IF++ D  D  +DE +A+H++ +H
Sbjct  189  NLPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH  224


>CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain.  This entry represents 
the AAA-lid domain found in MCM proteins.
Length=86

 Score = 128 bits (323),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 43/92 (47%), Positives = 60/92 (65%), Gaps = 6/92 (7%)

Query  287  EKMKRYISYCRSRCAPRLSPEAAEKLSSHFVSIRKQVHRAEMDANTRSSIPITVRQLEAI  346
            E +++YI+Y R +  P+LS EA EKL   +V +RK          + SSIPITVRQLE++
Sbjct  1    ELLRKYIAYAREKIKPKLSEEAREKLVDAYVELRK------ESTGSGSSIPITVRQLESL  54

Query  347  VRITESLAKLSLSPIATEAHVDEAIRLFLAST  378
            +R++E+ AK+ LS I TE  V+EAIRL   S 
Sbjct  55   IRLSEAHAKMRLSEIVTEEDVEEAIRLLKESL  86



Lambda      K        H        a         alpha
   0.318    0.134    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 569004184


Query= TCONS_00037504

Length=719
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459830 pfam00493, MCM, MCM2/3/5 family                            418     3e-144
CDD:465381 pfam17207, MCM_OB, MCM OB domain. This family contains...  170     1e-50 
CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain. This entry rep...  130     1e-36 
CDD:464206 pfam14551, MCM_N, MCM N-terminal domain. This family c...  73.9    1e-16 


>CDD:459830 pfam00493, MCM, MCM2/3/5 family.  
Length=224

 Score = 418 bits (1078),  Expect = 3e-144, Method: Composition-based stats.
 Identities = 148/216 (69%), Positives = 179/216 (83%), Gaps = 0/216 (0%)

Query  313  SRREDLYEALARSIAPSIWGNLDIKKAIVCLLMGGSKKILPDGMKLRGDINVLLLGDPGT  372
            ++R D+Y+ LA SIAPSI+G+ D+KKAI+  L GG KKILPDG +LRGDINVLL+GDPGT
Sbjct  9    AKRPDIYDKLADSIAPSIYGHEDVKKAILLQLFGGVKKILPDGTRLRGDINVLLVGDPGT  68

Query  373  AKSQLLKFTEKVSPIAIYTSGKGSSAAGLTASVQRDPQTREFYLEGGAMVLADGGVVCID  432
            AKSQLLK+ EK++P A+YTSGKGSSAAGLTA+V RDP T EF LE GA+VLADGGV CID
Sbjct  69   AKSQLLKYVEKIAPRAVYTSGKGSSAAGLTAAVVRDPVTGEFVLEAGALVLADGGVCCID  128

Query  433  EFDKMRDEDRVAIHEAMEQQTISIAKAGITTILNSRTSVLAAANPIFGRYDDLKTPGENI  492
            EFDKM DEDRVA+HEAMEQQTISIAKAGI   LN+R S+LAAANPIFGRYD  K+  ENI
Sbjct  129  EFDKMNDEDRVALHEAMEQQTISIAKAGIVATLNARCSILAAANPIFGRYDPKKSIAENI  188

Query  493  DFQTTILSRFDMIFIVRDDHDRNRDENIARHVMGVH  528
            +    +LSRFD+IF++ D  D  +DE +A+H++ +H
Sbjct  189  NLPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH  224


>CDD:465381 pfam17207, MCM_OB, MCM OB domain.  This family contains an OB-fold 
found within MCM proteins. This domain contains an insertion 
at the zinc binding motif.
Length=126

 Score = 170 bits (433),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 17/141 (12%)

Query  126  SIRDLNATNISHLVRIPGIVIGASTISSKATVVHIRCKGCDHSENIRVEGGFSGLTLPRR  185
            SIRDL + +I  LV + GIV   S +  K       C+ C H+  +++         P +
Sbjct  1    SIRDLRSEHIGKLVSVSGIVTRTSEVRPKLKKATFTCRKCGHTVGVKITE-------PTK  53

Query  186  CGRQKLPGEEPGEQCP-LDPYVIAHEKCQFVDQQVLKLQEAPDQVPVGELPRHVLISADR  244
            C         P  +C   DP+ + HEK +FVD Q +K+QE+P++VP GELPR + +  D 
Sbjct  54   C---------PNPECGNKDPFKLVHEKSKFVDFQKIKIQESPEEVPAGELPRSLDVILDD  104

Query  245  YLANRVVPGSRCTVMGIFSIY  265
             L +RV PG R TV GI+ + 
Sbjct  105  DLVDRVKPGDRVTVTGIYRVV  125


>CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain.  This entry represents 
the AAA-lid domain found in MCM proteins.
Length=86

 Score = 130 bits (329),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 43/92 (47%), Positives = 60/92 (65%), Gaps = 6/92 (7%)

Query  545  EKMKRYISYCRSRCAPRLSPEAAEKLSSHFVSIRKQVHRAEMDANTRSSIPITVRQLEAI  604
            E +++YI+Y R +  P+LS EA EKL   +V +RK          + SSIPITVRQLE++
Sbjct  1    ELLRKYIAYAREKIKPKLSEEAREKLVDAYVELRK------ESTGSGSSIPITVRQLESL  54

Query  605  VRITESLAKLSLSPIATEAHVDEAIRLFLAST  636
            +R++E+ AK+ LS I TE  V+EAIRL   S 
Sbjct  55   IRLSEAHAKMRLSEIVTEEDVEEAIRLLKESL  86


>CDD:464206 pfam14551, MCM_N, MCM N-terminal domain.  This family contains 
the N-terminal domain of MCM proteins.
Length=95

 Score = 73.9 bits (182),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 0/78 (0%)

Query  43   NRIYSDQLRQNVLVKQYFCDIDIAHLISYNEELAHKLTTEPADIIPLFEAALQQCTQRIV  102
               Y DQLR+ +  +Q   ++D+  L  ++ +LA  L   P + +PLFE AL++  + + 
Sbjct  18   EFKYRDQLREMIEREQRSLEVDLDDLREFDPDLAEALLENPYEYLPLFEEALKEVVKELS  77

Query  103  YPSQRDIVLPSHQLLLHS  120
                        Q+  ++
Sbjct  78   EDPDYAEEEKEFQVRFYN  95



Lambda      K        H        a         alpha
   0.319    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0771    0.140     1.90     42.6     43.6 

Effective search space used: 909470000


Query= TCONS_00037505

Length=718
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459830 pfam00493, MCM, MCM2/3/5 family                            418     3e-144
CDD:465381 pfam17207, MCM_OB, MCM OB domain. This family contains...  169     2e-50 
CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain. This entry rep...  129     3e-36 
CDD:464206 pfam14551, MCM_N, MCM N-terminal domain. This family c...  84.7    2e-20 


>CDD:459830 pfam00493, MCM, MCM2/3/5 family.  
Length=224

 Score = 418 bits (1077),  Expect = 3e-144, Method: Composition-based stats.
 Identities = 148/216 (69%), Positives = 179/216 (83%), Gaps = 0/216 (0%)

Query  312  SRREDLYEALARSIAPSIWGNLDIKKAIVCLLMGGSKKILPDGMKLRGDINVLLLGDPGT  371
            ++R D+Y+ LA SIAPSI+G+ D+KKAI+  L GG KKILPDG +LRGDINVLL+GDPGT
Sbjct  9    AKRPDIYDKLADSIAPSIYGHEDVKKAILLQLFGGVKKILPDGTRLRGDINVLLVGDPGT  68

Query  372  AKSQLLKFTEKVSPIAIYTSGKGSSAAGLTASVQRDPQTREFYLEGGAMVLADGGVVCID  431
            AKSQLLK+ EK++P A+YTSGKGSSAAGLTA+V RDP T EF LE GA+VLADGGV CID
Sbjct  69   AKSQLLKYVEKIAPRAVYTSGKGSSAAGLTAAVVRDPVTGEFVLEAGALVLADGGVCCID  128

Query  432  EFDKMRDEDRVAIHEAMEQQTISIAKAGITTILNSRTSVLAAANPIFGRYDDLKTPGENI  491
            EFDKM DEDRVA+HEAMEQQTISIAKAGI   LN+R S+LAAANPIFGRYD  K+  ENI
Sbjct  129  EFDKMNDEDRVALHEAMEQQTISIAKAGIVATLNARCSILAAANPIFGRYDPKKSIAENI  188

Query  492  DFQTTILSRFDMIFIVRDDHDRNRDENIARHVMGVH  527
            +    +LSRFD+IF++ D  D  +DE +A+H++ +H
Sbjct  189  NLPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH  224


>CDD:465381 pfam17207, MCM_OB, MCM OB domain.  This family contains an OB-fold 
found within MCM proteins. This domain contains an insertion 
at the zinc binding motif.
Length=126

 Score = 169 bits (432),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 17/141 (12%)

Query  125  SIRDLNATNISHLVRIPGIVIGASTISSKATVVHIRCKGCDHSENIRVEGGFSGLTLPRR  184
            SIRDL + +I  LV + GIV   S +  K       C+ C H+  +++         P +
Sbjct  1    SIRDLRSEHIGKLVSVSGIVTRTSEVRPKLKKATFTCRKCGHTVGVKITE-------PTK  53

Query  185  CGRQKLPGEEPGEQCP-LDPYVIAHEKCQFVDQQVLKLQEAPDQVPVGELPRHVLISADR  243
            C         P  +C   DP+ + HEK +FVD Q +K+QE+P++VP GELPR + +  D 
Sbjct  54   C---------PNPECGNKDPFKLVHEKSKFVDFQKIKIQESPEEVPAGELPRSLDVILDD  104

Query  244  YLANRVVPGSRCTVMGIFSIY  264
             L +RV PG R TV GI+ + 
Sbjct  105  DLVDRVKPGDRVTVTGIYRVV  125


>CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain.  This entry represents 
the AAA-lid domain found in MCM proteins.
Length=86

 Score = 129 bits (326),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 43/92 (47%), Positives = 60/92 (65%), Gaps = 6/92 (7%)

Query  544  EKMKRYISYCRSRCAPRLSPEAAEKLSSHFVSIRKQVHRAEMDANTRSSIPITVRQLEAI  603
            E +++YI+Y R +  P+LS EA EKL   +V +RK          + SSIPITVRQLE++
Sbjct  1    ELLRKYIAYAREKIKPKLSEEAREKLVDAYVELRK------ESTGSGSSIPITVRQLESL  54

Query  604  VRITESLAKLSLSPIATEAHVDEAIRLFLAST  635
            +R++E+ AK+ LS I TE  V+EAIRL   S 
Sbjct  55   IRLSEAHAKMRLSEIVTEEDVEEAIRLLKESL  86


>CDD:464206 pfam14551, MCM_N, MCM N-terminal domain.  This family contains 
the N-terminal domain of MCM proteins.
Length=95

 Score = 84.7 bits (210),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 49/95 (52%), Gaps = 2/95 (2%)

Query  27   QARLREFVLEFQLD--NAFIYRDQLRQNVLVKQYFCDIDIAHLISYNEELAHKLTTEPAD  84
            + + ++F+ EF+ D    F YRDQLR+ +  +Q   ++D+  L  ++ +LA  L   P +
Sbjct  1    KRKFKDFLEEFREDGDGEFKYRDQLREMIEREQRSLEVDLDDLREFDPDLAEALLENPYE  60

Query  85   IIPLFEAALQQCTQRIVYPSQRDIVLPSHQLLLHS  119
             +PLFE AL++  + +             Q+  ++
Sbjct  61   YLPLFEEALKEVVKELSEDPDYAEEEKEFQVRFYN  95



Lambda      K        H        a         alpha
   0.319    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 908014848


Query= TCONS_00037507

Length=718
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459830 pfam00493, MCM, MCM2/3/5 family                            418     4e-144
CDD:465381 pfam17207, MCM_OB, MCM OB domain. This family contains...  169     2e-50 
CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain. This entry rep...  129     3e-36 
CDD:464206 pfam14551, MCM_N, MCM N-terminal domain. This family c...  80.4    6e-19 


>CDD:459830 pfam00493, MCM, MCM2/3/5 family.  
Length=224

 Score = 418 bits (1077),  Expect = 4e-144, Method: Composition-based stats.
 Identities = 148/216 (69%), Positives = 179/216 (83%), Gaps = 0/216 (0%)

Query  312  SRREDLYEALARSIAPSIWGNLDIKKAIVCLLMGGSKKILPDGMKLRGDINVLLLGDPGT  371
            ++R D+Y+ LA SIAPSI+G+ D+KKAI+  L GG KKILPDG +LRGDINVLL+GDPGT
Sbjct  9    AKRPDIYDKLADSIAPSIYGHEDVKKAILLQLFGGVKKILPDGTRLRGDINVLLVGDPGT  68

Query  372  AKSQLLKFTEKVSPIAIYTSGKGSSAAGLTASVQRDPQTREFYLEGGAMVLADGGVVCID  431
            AKSQLLK+ EK++P A+YTSGKGSSAAGLTA+V RDP T EF LE GA+VLADGGV CID
Sbjct  69   AKSQLLKYVEKIAPRAVYTSGKGSSAAGLTAAVVRDPVTGEFVLEAGALVLADGGVCCID  128

Query  432  EFDKMRDEDRVAIHEAMEQQTISIAKAGITTILNSRTSVLAAANPIFGRYDDLKTPGENI  491
            EFDKM DEDRVA+HEAMEQQTISIAKAGI   LN+R S+LAAANPIFGRYD  K+  ENI
Sbjct  129  EFDKMNDEDRVALHEAMEQQTISIAKAGIVATLNARCSILAAANPIFGRYDPKKSIAENI  188

Query  492  DFQTTILSRFDMIFIVRDDHDRNRDENIARHVMGVH  527
            +    +LSRFD+IF++ D  D  +DE +A+H++ +H
Sbjct  189  NLPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH  224


>CDD:465381 pfam17207, MCM_OB, MCM OB domain.  This family contains an OB-fold 
found within MCM proteins. This domain contains an insertion 
at the zinc binding motif.
Length=126

 Score = 169 bits (432),  Expect = 2e-50, Method: Composition-based stats.
 Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 17/141 (12%)

Query  125  SIRDLNATNISHLVRIPGIVIGASTISSKATVVHIRCKGCDHSENIRVEGGFSGLTLPRR  184
            SIRDL + +I  LV + GIV   S +  K       C+ C H+  +++         P +
Sbjct  1    SIRDLRSEHIGKLVSVSGIVTRTSEVRPKLKKATFTCRKCGHTVGVKITE-------PTK  53

Query  185  CGRQKLPGEEPGEQCP-LDPYVIAHEKCQFVDQQVLKLQEAPDQVPVGELPRHVLISADR  243
            C         P  +C   DP+ + HEK +FVD Q +K+QE+P++VP GELPR + +  D 
Sbjct  54   C---------PNPECGNKDPFKLVHEKSKFVDFQKIKIQESPEEVPAGELPRSLDVILDD  104

Query  244  YLANRVVPGSRCTVMGIFSIY  264
             L +RV PG R TV GI+ + 
Sbjct  105  DLVDRVKPGDRVTVTGIYRVV  125


>CDD:465534 pfam17855, MCM_lid, MCM AAA-lid domain.  This entry represents 
the AAA-lid domain found in MCM proteins.
Length=86

 Score = 129 bits (326),  Expect = 3e-36, Method: Composition-based stats.
 Identities = 43/92 (47%), Positives = 60/92 (65%), Gaps = 6/92 (7%)

Query  544  EKMKRYISYCRSRCAPRLSPEAAEKLSSHFVSIRKQVHRAEMDANTRSSIPITVRQLEAI  603
            E +++YI+Y R +  P+LS EA EKL   +V +RK          + SSIPITVRQLE++
Sbjct  1    ELLRKYIAYAREKIKPKLSEEAREKLVDAYVELRK------ESTGSGSSIPITVRQLESL  54

Query  604  VRITESLAKLSLSPIATEAHVDEAIRLFLAST  635
            +R++E+ AK+ LS I TE  V+EAIRL   S 
Sbjct  55   IRLSEAHAKMRLSEIVTEEDVEEAIRLLKESL  86


>CDD:464206 pfam14551, MCM_N, MCM N-terminal domain.  This family contains 
the N-terminal domain of MCM proteins.
Length=95

 Score = 80.4 bits (199),  Expect = 6e-19, Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 48/95 (51%), Gaps = 2/95 (2%)

Query  27   QARLREFVLEFQLD--NAFIYRDQLRQNVLVKQYFCDIDIAHLISYNEELAHKLTTEPAD  84
            + + ++F+ EF+ D    F YRDQLR+ +  +Q   ++D+  L  ++ +LA  L   P +
Sbjct  1    KRKFKDFLEEFREDGDGEFKYRDQLREMIEREQRSLEVDLDDLREFDPDLAEALLENPYE  60

Query  85   IIPLVEAALQQCTQRIVYPSQRDIVLPSHQLLLHS  119
             +PL E AL++  + +             Q+  ++
Sbjct  61   YLPLFEEALKEVVKELSEDPDYAEEEKEFQVRFYN  95



Lambda      K        H        a         alpha
   0.319    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 908014848


Query= TCONS_00037506

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459830 pfam00493, MCM, MCM2/3/5 family                            418     2e-146
CDD:465381 pfam17207, MCM_OB, MCM OB domain. This family contains...  169     3e-51 
CDD:464206 pfam14551, MCM_N, MCM N-terminal domain. This family c...  84.7    1e-20 


>CDD:459830 pfam00493, MCM, MCM2/3/5 family.  
Length=224

 Score = 418 bits (1077),  Expect = 2e-146, Method: Composition-based stats.
 Identities = 148/216 (69%), Positives = 179/216 (83%), Gaps = 0/216 (0%)

Query  312  SRREDLYEALARSIAPSIWGNLDIKKAIVCLLMGGSKKILPDGMKLRGDINVLLLGDPGT  371
            ++R D+Y+ LA SIAPSI+G+ D+KKAI+  L GG KKILPDG +LRGDINVLL+GDPGT
Sbjct  9    AKRPDIYDKLADSIAPSIYGHEDVKKAILLQLFGGVKKILPDGTRLRGDINVLLVGDPGT  68

Query  372  AKSQLLKFTEKVSPIAIYTSGKGSSAAGLTASVQRDPQTREFYLEGGAMVLADGGVVCID  431
            AKSQLLK+ EK++P A+YTSGKGSSAAGLTA+V RDP T EF LE GA+VLADGGV CID
Sbjct  69   AKSQLLKYVEKIAPRAVYTSGKGSSAAGLTAAVVRDPVTGEFVLEAGALVLADGGVCCID  128

Query  432  EFDKMRDEDRVAIHEAMEQQTISIAKAGITTILNSRTSVLAAANPIFGRYDDLKTPGENI  491
            EFDKM DEDRVA+HEAMEQQTISIAKAGI   LN+R S+LAAANPIFGRYD  K+  ENI
Sbjct  129  EFDKMNDEDRVALHEAMEQQTISIAKAGIVATLNARCSILAAANPIFGRYDPKKSIAENI  188

Query  492  DFQTTILSRFDMIFIVRDDHDRNRDENIARHVMGVH  527
            +    +LSRFD+IF++ D  D  +DE +A+H++ +H
Sbjct  189  NLPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH  224


>CDD:465381 pfam17207, MCM_OB, MCM OB domain.  This family contains an OB-fold 
found within MCM proteins. This domain contains an insertion 
at the zinc binding motif.
Length=126

 Score = 169 bits (431),  Expect = 3e-51, Method: Composition-based stats.
 Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 17/141 (12%)

Query  125  SIRDLNATNISHLVRIPGIVIGASTISSKATVVHIRCKGCDHSENIRVEGGFSGLTLPRR  184
            SIRDL + +I  LV + GIV   S +  K       C+ C H+  +++         P +
Sbjct  1    SIRDLRSEHIGKLVSVSGIVTRTSEVRPKLKKATFTCRKCGHTVGVKITE-------PTK  53

Query  185  CGRQKLPGEEPGEQCP-LDPYVIAHEKCQFVDQQVLKLQEAPDQVPVGELPRHVLISADR  243
            C         P  +C   DP+ + HEK +FVD Q +K+QE+P++VP GELPR + +  D 
Sbjct  54   C---------PNPECGNKDPFKLVHEKSKFVDFQKIKIQESPEEVPAGELPRSLDVILDD  104

Query  244  YLANRVVPGSRCTVMGIFSIY  264
             L +RV PG R TV GI+ + 
Sbjct  105  DLVDRVKPGDRVTVTGIYRVV  125


>CDD:464206 pfam14551, MCM_N, MCM N-terminal domain.  This family contains 
the N-terminal domain of MCM proteins.
Length=95

 Score = 84.7 bits (210),  Expect = 1e-20, Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 49/95 (52%), Gaps = 2/95 (2%)

Query  27   QARLREFVLEFQLD--NAFIYRDQLRQNVLVKQYFCDIDIAHLISYNEELAHKLTTEPAD  84
            + + ++F+ EF+ D    F YRDQLR+ +  +Q   ++D+  L  ++ +LA  L   P +
Sbjct  1    KRKFKDFLEEFREDGDGEFKYRDQLREMIEREQRSLEVDLDDLREFDPDLAEALLENPYE  60

Query  85   IIPLFEAALQQCTQRIVYPSQRDIVLPSHQLLLHS  119
             +PLFE AL++  + +             Q+  ++
Sbjct  61   YLPLFEEALKEVVKELSEDPDYAEEEKEFQVRFYN  95



Lambda      K        H        a         alpha
   0.320    0.137    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 691920164


Query= TCONS_00037508

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase. This...  115     4e-30


>CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase.  This family 
includes a variety of carbohydrate and pyrimidine kinases.
Length=294

 Score = 115 bits (290),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 125/348 (36%), Gaps = 73/348 (21%)

Query  7    VIGSLNADMVSVTPRFPEAGETITSSSYFTSAGGKGANQAVACGRLSRRKPTAPSASNTP  66
            VIG  N D++      P  GE +  S+     GGKGAN AVA  RL              
Sbjct  4    VIGEANIDLIGNVEGLP--GELVRVSTVEKGPGGKGANVAVALARLG-------------  48

Query  67   ESQRHTEHNVKVEMVGAVGALDGHFQALLKPTLEKSGVDTSRVQVVEDAYTGVAVIIVDS  126
                       V  +GAVG  D +F   L   L+K GVDT  V + ED  TG A+I VD 
Sbjct  49   ---------GDVAFIGAVG--DDNFGEFLLQELKKEGVDTDYVVIDEDTRTGTALIEVD-  96

Query  127  SAGGENRILFSPGANYTGMRATEDVLGMGLAAPLPDVIVM----QGEIPVDTVVGILRDI  182
               GE  I+F+ GA        E++          D++ +       +P  T+       
Sbjct  97   -GDGERTIVFNRGAA--ADLTPEELEENEDLLENADLLYISGSLPLGLPEATL-------  146

Query  183  RVWKANDRAQGKKGIEAGPDVIYNPAPAPPGGLPEDVYTAVDHLIMNETEAELMSPSEEH  242
                   +  G        D               ++    D L  NE E E ++     
Sbjct  147  EELIEAAKNGGT------FDPNLLDPLGAAREALLELLPLADLLKPNEEELEALT-----  195

Query  243  LLQVVPGVEKESRNEKVARY--FHQLGVTYVLITLGSKGVWYSATDAGTSGPADGVNRFT  300
                  G + +   E +A        G+  V++TLG+ G      D              
Sbjct  196  ------GAKLDDIEEALAALHKLLAKGIKTVIVTLGADGALVVEGDG------------E  237

Query  301  KQIPAAKVSKVLDTTAAGDTFVGAYAVEVARWRESRQADGKAGQDVAA  348
              +PA    KV+DTT AGD+FVG +   +   +   +A  +     AA
Sbjct  238  VHVPAVPKVKVVDTTGAGDSFVGGFLAGLLAGKSLEEA-LRFANAAAA  284



Lambda      K        H        a         alpha
   0.314    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00037509

Length=371


***** No hits found *****



Lambda      K        H        a         alpha
   0.306    0.120    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445153340


Query= TCONS_00037510

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase. This...  115     4e-30


>CDD:425587 pfam00294, PfkB, pfkB family carbohydrate kinase.  This family 
includes a variety of carbohydrate and pyrimidine kinases.
Length=294

 Score = 115 bits (290),  Expect = 4e-30, Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 125/348 (36%), Gaps = 73/348 (21%)

Query  7    VIGSLNADMVSVTPRFPEAGETITSSSYFTSAGGKGANQAVACGRLSRRKPTAPSASNTP  66
            VIG  N D++      P  GE +  S+     GGKGAN AVA  RL              
Sbjct  4    VIGEANIDLIGNVEGLP--GELVRVSTVEKGPGGKGANVAVALARLG-------------  48

Query  67   ESQRHTEHNVKVEMVGAVGALDGHFQALLKPTLEKSGVDTSRVQVVEDAYTGVAVIIVDS  126
                       V  +GAVG  D +F   L   L+K GVDT  V + ED  TG A+I VD 
Sbjct  49   ---------GDVAFIGAVG--DDNFGEFLLQELKKEGVDTDYVVIDEDTRTGTALIEVD-  96

Query  127  SAGGENRILFSPGANYTGMRATEDVLGMGLAAPLPDVIVM----QGEIPVDTVVGILRDI  182
               GE  I+F+ GA        E++          D++ +       +P  T+       
Sbjct  97   -GDGERTIVFNRGAA--ADLTPEELEENEDLLENADLLYISGSLPLGLPEATL-------  146

Query  183  RVWKANDRAQGKKGIEAGPDVIYNPAPAPPGGLPEDVYTAVDHLIMNETEAELMSPSEEH  242
                   +  G        D               ++    D L  NE E E ++     
Sbjct  147  EELIEAAKNGGT------FDPNLLDPLGAAREALLELLPLADLLKPNEEELEALT-----  195

Query  243  LLQVVPGVEKESRNEKVARY--FHQLGVTYVLITLGSKGVWYSATDAGTSGPADGVNRFT  300
                  G + +   E +A        G+  V++TLG+ G      D              
Sbjct  196  ------GAKLDDIEEALAALHKLLAKGIKTVIVTLGADGALVVEGDG------------E  237

Query  301  KQIPAAKVSKVLDTTAAGDTFVGAYAVEVARWRESRQADGKAGQDVAA  348
              +PA    KV+DTT AGD+FVG +   +   +   +A  +     AA
Sbjct  238  VHVPAVPKVKVVDTTGAGDSFVGGFLAGLLAGKSLEEA-LRFANAAAA  284



Lambda      K        H        a         alpha
   0.314    0.130    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 466002600


Query= TCONS_00043088

Length=274


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00037511

Length=108


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.135    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81400498


Query= TCONS_00037512

Length=650
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  692     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 692 bits (1787),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/404 (62%), Positives = 324/404 (80%), Gaps = 1/404 (0%)

Query  186  PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  245
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  246  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  304
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  305  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  364
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  365  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  424
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  425  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  484
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  485  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTIHSMVYNA  544
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+T+ ++  N 
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQTVRNLALNV  360

Query  545  MKMFMEINPQLFDECSHEYNERQNSAEQREKSRQERWEKVLERA  588
            +K+ ME++P+LFDEC  +Y E +   ++R+K R+E W+++   A
Sbjct  361  LKLLMEMDPELFDECLAKYKEEKQKEKERKKKRKETWKRIERAA  404



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 821458030


Query= TCONS_00037514

Length=646
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  692     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 692 bits (1788),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/404 (62%), Positives = 324/404 (80%), Gaps = 1/404 (0%)

Query  186  PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  245
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  246  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  304
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  305  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  364
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  365  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  424
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  425  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  484
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  485  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTIHSMVYNA  544
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+T+ ++  N 
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQTVRNLALNV  360

Query  545  MKMFMEINPQLFDECSHEYNERQNSAEQREKSRQERWEKVLERA  588
            +K+ ME++P+LFDEC  +Y E +   ++R+K R+E W+++   A
Sbjct  361  LKLLMEMDPELFDECLAKYKEEKQKEKERKKKRKETWKRIERAA  404



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 815558870


Query= TCONS_00037513

Length=692
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  699     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 699 bits (1806),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/404 (62%), Positives = 324/404 (80%), Gaps = 1/404 (0%)

Query  186  PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  245
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  246  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  304
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  305  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  364
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  365  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  424
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  425  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  484
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  485  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTIHSMVYNA  544
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+T+ ++  N 
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQTVRNLALNV  360

Query  545  MKMFMEINPQLFDECSHEYNERQNSAEQREKSRQERWEKVLERA  588
            +K+ ME++P+LFDEC  +Y E +   ++R+K R+E W+++   A
Sbjct  361  LKLLMEMDPELFDECLAKYKEEKQKEKERKKKRKETWKRIERAA  404



Lambda      K        H        a         alpha
   0.317    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 883399210


Query= TCONS_00043089

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  622     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 622 bits (1606),  Expect = 0.0, Method: Composition-based stats.
 Identities = 233/351 (66%), Positives = 288/351 (82%), Gaps = 1/351 (0%)

Query  186  PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  245
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  246  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  304
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  305  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  364
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  365  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  424
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  425  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  484
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  485  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNR  535
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQ  351



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00037515

Length=650
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  692     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 692 bits (1787),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/404 (62%), Positives = 324/404 (80%), Gaps = 1/404 (0%)

Query  186  PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  245
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  246  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  304
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  305  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  364
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  365  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  424
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  425  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  484
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  485  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTIHSMVYNA  544
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+T+ ++  N 
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQTVRNLALNV  360

Query  545  MKMFMEINPQLFDECSHEYNERQNSAEQREKSRQERWEKVLERA  588
            +K+ ME++P+LFDEC  +Y E +   ++R+K R+E W+++   A
Sbjct  361  LKLLMEMDPELFDECLAKYKEEKQKEKERKKKRKETWKRIERAA  404



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 821458030


Query= TCONS_00043090

Length=539
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  449     5e-156


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 449 bits (1157),  Expect = 5e-156, Method: Composition-based stats.
 Identities = 168/252 (67%), Positives = 207/252 (82%), Gaps = 1/252 (0%)

Query  186  PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  245
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  246  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  304
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  305  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  364
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  365  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  424
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  425  FLEKDSTLTKEV  436
            F+EKD +L + V
Sbjct  241  FIEKDPSLAEPV  252



Lambda      K        H        a         alpha
   0.320    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 678301568


Query= TCONS_00043092

Length=692
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  699     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 699 bits (1807),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/404 (62%), Positives = 324/404 (80%), Gaps = 1/404 (0%)

Query  186  PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  245
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  246  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  304
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  305  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  364
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  365  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  424
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  425  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  484
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  485  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTIHSMVYNA  544
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+T+ ++  N 
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQTVRNLALNV  360

Query  545  MKMFMEINPQLFDECSHEYNERQNSAEQREKSRQERWEKVLERA  588
            +K+ ME++P+LFDEC  +Y E +   ++R+K R+E W+++   A
Sbjct  361  LKLLMEMDPELFDECLAKYKEEKQKEKERKKKRKETWKRIERAA  404



Lambda      K        H        a         alpha
   0.317    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 883399210


Query= TCONS_00043091

Length=689
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  699     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 699 bits (1807),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/404 (62%), Positives = 324/404 (80%), Gaps = 1/404 (0%)

Query  183  PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  242
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  243  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  301
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  302  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  361
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  362  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  421
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  422  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  481
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  482  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTIHSMVYNA  541
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+T+ ++  N 
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQTVRNLALNV  360

Query  542  MKMFMEINPQLFDECSHEYNERQNSAEQREKSRQERWEKVLERA  585
            +K+ ME++P+LFDEC  +Y E +   ++R+K R+E W+++   A
Sbjct  361  LKLLMEMDPELFDECLAKYKEEKQKEKERKKKRKETWKRIERAA  404



Lambda      K        H        a         alpha
   0.317    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 878974840


Query= TCONS_00043093

Length=127


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.135    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 89449900


Query= TCONS_00043094

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  622     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 622 bits (1606),  Expect = 0.0, Method: Composition-based stats.
 Identities = 233/351 (66%), Positives = 288/351 (82%), Gaps = 1/351 (0%)

Query  186  PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  245
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  246  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  304
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  305  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  364
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  365  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  424
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  425  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  484
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  485  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNR  535
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQ  351



Lambda      K        H        a         alpha
   0.318    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 672245304


Query= TCONS_00043095

Length=646
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  692     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 692 bits (1788),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/404 (62%), Positives = 324/404 (80%), Gaps = 1/404 (0%)

Query  186  PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  245
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  246  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  304
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  305  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  364
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  365  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  424
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  425  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  484
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  485  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTIHSMVYNA  544
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+T+ ++  N 
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQTVRNLALNV  360

Query  545  MKMFMEINPQLFDECSHEYNERQNSAEQREKSRQERWEKVLERA  588
            +K+ ME++P+LFDEC  +Y E +   ++R+K R+E W+++   A
Sbjct  361  LKLLMEMDPELFDECLAKYKEEKQKEKERKKKRKETWKRIERAA  404



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 815558870


Query= TCONS_00037516

Length=692
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  699     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 699 bits (1806),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/404 (62%), Positives = 324/404 (80%), Gaps = 1/404 (0%)

Query  186  PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  245
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  246  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  304
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  305  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  364
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  365  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  424
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  425  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  484
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  485  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTIHSMVYNA  544
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+T+ ++  N 
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQTVRNLALNV  360

Query  545  MKMFMEINPQLFDECSHEYNERQNSAEQREKSRQERWEKVLERA  588
            +K+ ME++P+LFDEC  +Y E +   ++R+K R+E W+++   A
Sbjct  361  LKLLMEMDPELFDECLAKYKEEKQKEKERKKKRKETWKRIERAA  404



Lambda      K        H        a         alpha
   0.317    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0720    0.140     1.90     42.6     43.6 

Effective search space used: 883399210


Query= TCONS_00037517

Length=692
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  699     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 699 bits (1806),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/404 (62%), Positives = 324/404 (80%), Gaps = 1/404 (0%)

Query  186  PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  245
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  246  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  304
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  305  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  364
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  365  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  424
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  425  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  484
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  485  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTIHSMVYNA  544
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+T+ ++  N 
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQTVRNLALNV  360

Query  545  MKMFMEINPQLFDECSHEYNERQNSAEQREKSRQERWEKVLERA  588
            +K+ ME++P+LFDEC  +Y E +   ++R+K R+E W+++   A
Sbjct  361  LKLLMEMDPELFDECLAKYKEEKQKEKERKKKRKETWKRIERAA  404



Lambda      K        H        a         alpha
   0.317    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 883399210


Query= TCONS_00037518

Length=646
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  692     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 692 bits (1788),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/404 (62%), Positives = 324/404 (80%), Gaps = 1/404 (0%)

Query  186  PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  245
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  246  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  304
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  305  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  364
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  365  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  424
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  425  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  484
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  485  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTIHSMVYNA  544
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+T+ ++  N 
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQTVRNLALNV  360

Query  545  MKMFMEINPQLFDECSHEYNERQNSAEQREKSRQERWEKVLERA  588
            +K+ ME++P+LFDEC  +Y E +   ++R+K R+E W+++   A
Sbjct  361  LKLLMEMDPELFDECLAKYKEEKQKEKERKKKRKETWKRIERAA  404



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 815558870


Query= TCONS_00043096

Length=650
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  692     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 692 bits (1787),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/404 (62%), Positives = 324/404 (80%), Gaps = 1/404 (0%)

Query  186  PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  245
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  246  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  304
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  305  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  364
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  365  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  424
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  425  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  484
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  485  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTIHSMVYNA  544
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+T+ ++  N 
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQTVRNLALNV  360

Query  545  MKMFMEINPQLFDECSHEYNERQNSAEQREKSRQERWEKVLERA  588
            +K+ ME++P+LFDEC  +Y E +   ++R+K R+E W+++   A
Sbjct  361  LKLLMEMDPELFDECLAKYKEEKQKEKERKKKRKETWKRIERAA  404



Lambda      K        H        a         alpha
   0.317    0.133    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 821458030


Query= TCONS_00037519

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  675     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 675 bits (1744),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/404 (62%), Positives = 324/404 (80%), Gaps = 1/404 (0%)

Query  59   PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  118
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  119  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  177
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  178  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  237
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  238  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  297
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  298  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  357
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  358  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTIHSMVYNA  417
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+T+ ++  N 
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQTVRNLALNV  360

Query  418  MKMFMEINPQLFDECSHEYNERQNSAEQREKSRQERWEKVLERA  461
            +K+ ME++P+LFDEC  +Y E +   ++R+K R+E W+++   A
Sbjct  361  LKLLMEMDPELFDECLAKYKEEKQKEKERKKKRKETWKRIERAA  404



Lambda      K        H        a         alpha
   0.320    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 664674974


Query= TCONS_00043097

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  681     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 681 bits (1759),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/404 (62%), Positives = 324/404 (80%), Gaps = 1/404 (0%)

Query  59   PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  118
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  119  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  177
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  178  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  237
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  238  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  297
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  298  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  357
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  358  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTIHSMVYNA  417
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+T+ ++  N 
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQTVRNLALNV  360

Query  418  MKMFMEINPQLFDECSHEYNERQNSAEQREKSRQERWEKVLERA  461
            +K+ ME++P+LFDEC  +Y E +   ++R+K R+E W+++   A
Sbjct  361  LKLLMEMDPELFDECLAKYKEEKQKEKERKKKRKETWKRIERAA  404



Lambda      K        H        a         alpha
   0.320    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 706864444


Query= TCONS_00037520

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  693     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 693 bits (1792),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/404 (62%), Positives = 324/404 (80%), Gaps = 1/404 (0%)

Query  211  PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  270
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  271  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  329
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  330  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  389
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  390  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  449
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  450  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  509
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  510  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTIHSMVYNA  569
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+T+ ++  N 
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQTVRNLALNV  360

Query  570  MKMFMEINPQLFDECSHEYNERQNSAEQREKSRQERWEKVLERA  613
            +K+ ME++P+LFDEC  +Y E +   ++R+K R+E W+++   A
Sbjct  361  LKLLMEMDPELFDECLAKYKEEKQKEKERKKKRKETWKRIERAA  404



Lambda      K        H        a         alpha
   0.317    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 858327780


Query= TCONS_00037521

Length=717
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  701     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 701 bits (1811),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/404 (62%), Positives = 324/404 (80%), Gaps = 1/404 (0%)

Query  211  PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  270
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  271  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  329
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  330  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  389
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  390  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  449
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  450  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  509
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  510  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTIHSMVYNA  569
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+T+ ++  N 
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQTVRNLALNV  360

Query  570  MKMFMEINPQLFDECSHEYNERQNSAEQREKSRQERWEKVLERA  613
            +K+ ME++P+LFDEC  +Y E +   ++R+K R+E W+++   A
Sbjct  361  LKLLMEMDPELFDECLAKYKEEKQKEKERKKKRKETWKRIERAA  404



Lambda      K        H        a         alpha
   0.317    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 906559696


Query= TCONS_00043098

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B su...  672     0.0  


>CDD:460264 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 
family).  Protein phosphatase 2A (PP2A) is a major intracellular 
protein phosphatase that regulates multiple aspects 
of cell growth and metabolism. The ability of this widely distributed 
heterotrimeric enzyme to act on a diverse array of 
substrates is largely controlled by the nature of its regulatory 
B subunit. There are multiple families of B subunits 
(See also pfam01240), this family is called the B56 family.
Length=404

 Score = 672 bits (1735),  Expect = 0.0, Method: Composition-based stats.
 Identities = 252/404 (62%), Positives = 324/404 (80%), Gaps = 1/404 (0%)

Query  59   PPNRRQELFMQKIDQCNIIFDFNDPTADMKSKEIKRLALHELLDYVANNRSVITEPMYPR  118
            PP+  Q+LF++K+ QC +IFDFNDP +D+K KEIKR  L E++DYV+N+  V+TE +YP 
Sbjct  1    PPSEFQDLFLKKLQQCCVIFDFNDPNSDLKEKEIKRQTLKEIVDYVSNSGKVLTEEVYPE  60

Query  119  VVEMFAKNLFRPIPPP-VTPQGEAFDPEEDEPVLEVAWPHIQVVYEFFLRFIESQDFNTN  177
            + +M A NLFRP+PP   +   +  DPEEDEP LE AWPH+Q+VYE  LRF+ES DF+  
Sbjct  61   IFKMIAANLFRPLPPIPSSLYDDLADPEEDEPFLEPAWPHLQLVYEILLRFVESPDFDPK  120

Query  178  IAKAYIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRSINNVFFQFTY  237
            +AK YIDH FVL+LL+LFDSEDPRERD+LKT LHRIYGKFL LR +IR++INN+F++F Y
Sbjct  121  VAKKYIDHSFVLRLLDLFDSEDPRERDYLKTFLHRIYGKFLGLRPFIRKAINNIFYRFIY  180

Query  238  ETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLLPLHKVKSLSMYHPQLAYCIVQ  297
            ETER NGIAELLEILGSIINGFALPLKEEHK+FL RVLLPLHK K LS+YH QLAYC+VQ
Sbjct  181  ETERHNGIAELLEILGSIINGFALPLKEEHKIFLLRVLLPLHKPKHLSLYHQQLAYCVVQ  240

Query  298  FLEKDSTLTKEVVMGLLRYWPKTNSTKEVMYLNEVEDIFEVMDPAEFAKVQVPLFQQLAK  357
            F+EKD +L + V+ GLL++WPKTNS KEVM+LNE+E+I EV+ P EF K+ VPLF+QLA+
Sbjct  241  FIEKDPSLAEPVIRGLLKHWPKTNSQKEVMFLNELEEILEVIPPEEFQKIMVPLFKQLAR  300

Query  358  SVASPHFQVAERALYFWNNEYFCNLVSDNVETILPIMFAPLYENSKGHWNRTIHSMVYNA  417
             + SPHFQVAERALY WNNEY  NL+SDN + ILPI+F  L +NSK HWN+T+ ++  N 
Sbjct  301  CINSPHFQVAERALYLWNNEYIVNLISDNSKVILPIIFPALEKNSKNHWNQTVRNLALNV  360

Query  418  MKMFMEINPQLFDECSHEYNERQNSAEQREKSRQERWEKVLERA  461
            +K+ ME++P+LFDEC  +Y E +   ++R+K R+E W+++   A
Sbjct  361  LKLLMEMDPELFDECLAKYKEEKQKEKERKKKRKETWKRIERAA  404



Lambda      K        H        a         alpha
   0.320    0.136    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 648020248


Query= TCONS_00037523

Length=3880
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466357 pfam20206, Tra1_ring, Tra1 HEAT repeat ring region. Th...  1673    0.0  
CDD:466326 pfam20175, Tra1_central, Tra1 HEAT repeat central regi...  823     0.0  
CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  276     3e-83
CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  133     4e-35


>CDD:466357 pfam20206, Tra1_ring, Tra1 HEAT repeat ring region.  This entry 
represents part of the Tra1 protein composed of alpha solenoid 
repeats that form a ring region.
Length=1678

 Score = 1673 bits (4334),  Expect = 0.0, Method: Composition-based stats.
 Identities = 707/1771 (40%), Positives = 1035/1771 (58%), Gaps = 120/1771 (7%)

Query  890   RILGKLGGRNRKFLNHPPELTFEQFSDDSPSFDIKLIGPSEK-RPFPSSIGVDLAIRKLM  948
             RILGKLGGRNR+FL  PP+L +   + D  S  ++L   +   +  P    VDLA R L 
Sbjct  1     RILGKLGGRNRRFLKEPPKLEYRD-AGDEASLTVELEFGAPSDQTLPLDPAVDLAKRTLR  59

Query  949   EVPKTAAAKASDGYYKQQAFRMLSSQLKLYIGHENVPEDLAALLRLHANDLFEGKT--TA  1006
                    +  S  +Y++QAF +L S L L +  ++ P+DL A L+     L E K    A
Sbjct  60    -------SSTSLPHYRKQAFELLKSALALLLDSDDSPDDLLARLQAAIQPLLEVKIESEA  112

Query  1007  MTDILDKSERSSSI-AKKLAQEGTLKQLLKACIFATTLPDIEQSATAFVADVCKHFAVVE  1065
              +D+ + +   S+  AK   QE   KQ LK   FA ++ ++   A  F+  + +HF ++E
Sbjct  113   PSDLSNLNTDDSAAKAKAEEQEELFKQALKGLFFAASIKELRAEALPFLKGLLRHFTLLE  172

Query  1066  VGRALALARHNRKPFDVHSGEGPVYLDSRILAEAIVESLSSDNLRVRDGAEAAMQVMKDA  1125
             +   +   + +R+ F++   EGP  LD  +  +AIVESLSS++  +RD  E+ ++++ D 
Sbjct  173   LAEEIGPFKESRRRFNL---EGP--LDPLVFIDAIVESLSSESKELRDAGESVLKLILDT  227

Query  1126  AGIIFGAPERVANL--PFFQHLGRVFCHSCHSEEWFTKAGGSLGIRLFATKLDLGDSWLF  1183
                + G+ E V  L  P F +L   FCH C+ E W+ K GG LGIR+   +LDLG  W+ 
Sbjct  228   LVTLLGSKEVVDQLNEPLFHYLASRFCHLCYEEAWYRKLGGCLGIRILLERLDLGLKWVL  287

Query  1184  DKQFEFARALMYVIKDTPADLPASTRVSAGDTLDLILRRCC---KNVSKDDMKNEK--SR  1238
             D Q EF RAL++V+KD P ++P+     A DTL  IL+ C    K+  K      K  S+
Sbjct  288   DHQLEFVRALLFVLKDMPPEVPSGNVDDAKDTLLFILKVCNTPPKSTPKTTEGTAKQRSK  347

Query  1239  LWSLCGFFVYELSHMNKHVREASRRSFSTIAEVLGCQVHELIFPVKDRLLQSIFNKPLRA  1298
             L +L G  V ELS  N+ VRE ++++   +AE+ G  V EL+ PVK+RLLQ IF KPLRA
Sbjct  348   LNTLVGLLVSELSSSNEIVRETAQKALELLAELTGIPVTELLEPVKERLLQPIFTKPLRA  407

Query  1299  LPFPTQIGFIDAITFCLSLHNNIVTFNEPLNRLMLESLALADADDESLASKPNEFKNAEM  1358
             LPFP QIG IDAITFCLSL   ++ FNE L RL+ E+LALADA+D +L  +  ++KN   
Sbjct  408   LPFPMQIGHIDAITFCLSLRPPLLEFNEELVRLLHEALALADAEDAALVGRNPQYKNLTQ  467

Query  1359  IVNLRVACLRLLSMAMSFPEFANTPQNTSRARIISVFFKSLYSRSHDVIEAANAGLRDVL  1418
             ++ LRVAC+RLLS AM+ P+F    Q  +R RIISVFFKSLYSRS +V++AA+ GL+ VL
Sbjct  468   LIQLRVACIRLLSAAMACPDFLAPKQVNTRNRIISVFFKSLYSRSPEVVDAAHDGLKQVL  527

Query  1419  TQTNKLPKDLLQNGLRPILMNLQDPKRLSVAGLDGLARLLTLLTNYFKVEIGARLLDHMK  1478
              Q  KLPKDLLQ GLRPILMNL D KRL+VAGL+GLARLL LLTNYFKVEIG +LLDH++
Sbjct  528   AQQQKLPKDLLQTGLRPILMNLSDHKRLTVAGLEGLARLLELLTNYFKVEIGEKLLDHLR  587

Query  1479  VIADDAVLQKVSFSLVEQNQTIKIVTAIFNIFHLLPPAATSFMEHLVNKVLELEEKLRRT  1538
               AD  +LQ+ S   +E+N+ +KI  AI NIFHLLPPAA+ F+E LV  V++LE  LRR 
Sbjct  588   KWADPEMLQEASLKPLEENEEVKIAAAILNIFHLLPPAASKFLEDLVKLVIQLEAVLRRY  647

Query  1539  SNSPFRKPLVKYLNRYPKESLAFFQARFKEERFGRFFGQILADPESEALRAAVVADTE--  1596
              +SPFR+PL KYLNRYP+E++ FF  R  + R+ R F  IL  P++E LRA V +     
Sbjct  648   VSSPFREPLAKYLNRYPEEAVEFFLERLSDPRYSRLFRDILKSPDAEPLRAEVSSKPSRV  707

Query  1597  -GFKSAVFGQDSSDGRNTAAINGIYVVHSVCSYEATKRWLVSHGDLKTMLLNAGRDLEKK  1655
                   +F + +   +      G+ +V ++        WL S+ D+   LL   R L + 
Sbjct  708   SLLNIKLFLETADS-KTALRYQGLLIVRTLVKLNPN--WLPSNNDVLQALLQLWRSLHRL  764

Query  1656  LRSDRLPANERLRVEQAEDQLMDIFTIYLSESVQDLDFLFDLIDGLSSEELKRTLAFPKF  1715
              R     +    +  +    L+ I   YL ++  D+D LFDL++  +   +        F
Sbjct  765   QRLGNEDSLIHFQQLRESKLLLKILLQYLRQNPDDIDLLFDLLEIFTLPTVTDFSFLRDF  824

Query  1716  IYRHIITNESIDYRRSVIMRCLDLYGQRTCSQKMKTYAFHNLVNPIFAMDVQTTWNSPSN  1775
             +Y  +    S++ +R++++R L+++   T SQ +K  A  +L+NPI A   +       +
Sbjct  825   LYEEVALKYSVEQKRAILLRFLEMFPDPTTSQDLKVKALRHLINPILAASFE----RGES  880

Query  1776  SPKLMDKSMTESIQSRLWRPQLADLSEESTQAGVDHSRMELLQLSALLIKYHHQTVQDSR  1835
               +L+D  + + + +++W+P    L+ +      D  R+ELLQLS LL++Y  + + ++R
Sbjct  881   KEELVDADVIDQLHAKIWKP--LQLAGDDATFSDDGLRIELLQLSTLLVEYASELIGENR  938

Query  1836  KDIIKFAWNYIRLEDIINKYGAYVLISYFIAHYETPFKIVVQVYVALLRAHQNEGKALVT  1895
             KD+IKFAWN+++L+D   K  AYVLI+ FI  ++TP KIV+QVYVALL+AHQ EG+ALV 
Sbjct  939   KDLIKFAWNFLKLDDPTVKQAAYVLIARFIEAFDTPPKIVLQVYVALLKAHQPEGRALVR  998

Query  1896  QALDVLAPVLPSRIMSATSNAQAPDTRYPLWAKWPRRILAEETANLQQVMSIFQFLVRHP  1955
             QALD+LAP LP R+          +  YP W KW +RIL EE  ++ Q++ I+Q +VRHP
Sbjct  999   QALDILAPALPKRL--------PENPGYPTWVKWTKRILVEEGHSIPQLVHIYQLIVRHP  1050

Query  1956  NLFYESREHFVPLIVPSLIKIAAPPNSNNESKKLALNLIGLIWQWEQRRVTSSRTAMTNG  2015
             +LFY +RE FVP +V SL K+  PPN+  E++KLA++L  LI +WE+RR  S   + ++ 
Sbjct  1051  DLFYPNRELFVPHMVTSLQKLGLPPNATTETRKLAVDLAELIIRWERRRSESMDVSESSN  1110

Query  2016  ILESPNARKRKLDDTQGTSSPSAALGPPSSHERTE----YIIPSDLRAAMTKYLITFITT  2071
                  + +   LD +    S +++          +    Y IP  LR  +  +LI F  T
Sbjct  1111  EESGGDKQTVPLDSSSSPKSFASSSASADPTMGADDSSNYPIPLSLRETVVNFLIRFACT  1170

Query  2072  VPERFPVPAARFRELPSSKPQPQQPPILTGDMIKKAVFLLRNLLSPEYWGDLDIEL--YQ  2129
               E                         +  +  +A+ LL++LLSP+ W D+ I+L  ++
Sbjct  1171  STE----------------------DSSSKGLSARALELLKDLLSPDLWPDVSIKLSFFE  1208

Query  2130  KITEPILAGEKADKPDEKHITSMINALQVVRVLLAVKPDEWITARLPLVQKLFEKPLRSD  2189
             K+           +  E  I  + NAL+++ ++L VKP+ WI + L  +QKL EK L+SD
Sbjct  1209  KVLAQ-------TEVSENSIPQICNALEILNIVLEVKPNAWIISNLSQLQKLLEKCLKSD  1261

Query  2190  NPEIQDSLHGVEDSMDISPKLPPPVRRVLDALPEDQLEEEDAMDVENSPSEFVTYLSAIA  2249
             NP+IQ++L              P ++R+L+ALP      EDA +V +    F  ++  I 
Sbjct  1262  NPKIQEALR-------------PILKRILEALPVSVEGSEDAEEVSS----FYKFIETII  1304

Query  2250  TETLSANNY---ISSLNTLWTLSKNKPAEMDTHILPVMKAFSQKLAKEHVA---ASTNNQ  2303
             TE LS+      + +L+ L   +K++P  +D  I  +MK   QKL KEH+A      ++ 
Sbjct  1305  TEGLSSLTNTGLLGTLSLLSAWAKHRPDYIDPFIPSLMKVL-QKLVKEHLAANSQDASSS  1363

Query  2304  QAQYPPGAAKPAENLPDQQEYEIGVDLILKTIELISVRMSHLGEQRRPFLSVLAQLVERS  2363
              A  PP               E   +L++KT+EL+ +R+SHLGEQRR FLS L QL+E+S
Sbjct  1364  SASPPPF--------------ESTAELLIKTLELLKLRVSHLGEQRRWFLSALVQLIEKS  1409

Query  2364  QNEALCTKILNMVETWIFHSTESWPTLKEKTAVLHKMLLFETRADQKMLKKFLDLVIRIY  2423
              +  L   IL+MV  WI   TE +PT+KEK  +L KM+ FE R D  +   FLDL++ IY
Sbjct  1410  NDVELLRTILDMVREWIKEQTEGFPTIKEKAGLLVKMMSFEFRGDAALSADFLDLILDIY  1469

Query  2424  EDSKITRTELTVRLEHAFLIGTRAQDVEMRNRFMNIFDRSLTRLASSRLSYVLTCQNWDT  2483
             ED  + R+ELTVRLE AFL+G R+ D ++R +F  IFD SL+R  + RL Y+L  QNW++
Sbjct  1470  EDPALARSELTVRLEPAFLMGLRSSDPKIRKKFFAIFDNSLSRSLAERLLYILGVQNWES  1529

Query  2484  LADSFWLAQASHLILGCVDMTAPARLHPDDFTVYPLSFLLSNAEKDARKADIMVDIQLEA  2543
             L D +W+ QA  L+LG VD   P  L     ++  L+ L    E D  ++  M D +L+ 
Sbjct  1530  LGDHYWIKQALDLLLGSVDKDNPLSLSESSASIPSLTALE---EADKEESYEMEDDELDK  1586

Query  2544  FISDRKRFIADIGDVRIRDLMEPLCQLQHTDPRVAYSLWTTLFPIFWSTLSREDRIDLEK  2603
              +S  + F+ ++  V + DL++PL QL H D  + + LW +LFP  WS LSR ++ DL K
Sbjct  1587  LLSGHRAFLDELRSVTLGDLLDPLRQLLHQDSNLTHKLWVSLFPAAWSALSRREQEDLTK  1646

Query  2604  GMVTLITREYHQRQLDKRPNVVQALLEGAVR  2634
              +V L++++YH +Q DKRPNV+Q LLEG  R
Sbjct  1647  AIVPLLSKDYHSKQADKRPNVIQTLLEGVAR  1677


>CDD:466326 pfam20175, Tra1_central, Tra1 HEAT repeat central region.  This 
entry represents part of the Tra1 protein composed of alpha 
solenoid repeats that forms the central region. This is named 
as central due to its position relative to the ring region.
Length=593

 Score = 823 bits (2127),  Expect = 0.0, Method: Composition-based stats.
 Identities = 309/605 (51%), Positives = 412/605 (68%), Gaps = 18/605 (3%)

Query  280  AFGEFITAQVKTMSFLAYLLRMYAHQLQDFLPTLPSVVVRLLQDCPREKSSARKELLVAI  339
             +G+FI AQVKT+SFLAYLLR +A QL+ +   LP +VVRLLQDCP E SS RKELLVA 
Sbjct  1    LYGDFIAAQVKTLSFLAYLLRGFAEQLRPYQDKLPEIVVRLLQDCPPEASSTRKELLVAT  60

Query  340  RHIINFNYRKIFLEKIDELLDERTLIGDGLTVYETMRPLAYSMLADLIHHVRDHLTRDQI  399
            RHI++  +R  F+  ID LLDE+ LIG G+T YET+RPLAYSMLADLIHHVR  L+ +Q+
Sbjct  61   RHILSTEFRSGFVPHIDLLLDEKVLIGTGVTSYETLRPLAYSMLADLIHHVRAELSIEQL  120

Query  400  RRTVEVYTKNLHDDFPGTSFQTMSAKLLLNMAERIAKLDDKR--EARYFLIMILDAIGDK  457
             + V +Y+KNLHD     S QTMSAKLLLN+ + I K DDK   EAR  L+ IL+   +K
Sbjct  121  SKVVSIYSKNLHDPTLPPSIQTMSAKLLLNLVDSIVKKDDKDPQEARDLLVRILETFVEK  180

Query  458  FAWINYQFDNAVKVSKAYKAGKKDIEPSSERYLADKENPPDWDEIDIFSASPIKTSN---  514
               +N  +   +K  +  K+ K+  E +S    AD++ P D D ++  +    K      
Sbjct  181  LKSLNRYYPPLLKQHRKKKSEKE--EKTSADVDADEDRPADIDTVEYLAIERAKPIEGIQ  238

Query  515  -PRDRGGDPVSDNIFLFKNLINGLKNIFHQLKNCNPEHIQIDPNNVPINWPEVSYGYNAE  573
             P     DP+ D  FLFK L++GLK I   L+NC P   Q    N P  W  V+ G   E
Sbjct  239  FPSPSPVDPLKDARFLFKTLLHGLKTIIWGLRNCQPTPPQ---QNAPSGWNSVARGLPPE  295

Query  574  EVRVIKKLFHEGARVFKYYGVDQPAPEVTYSSPFDFLASQYTAPMSREEKELLESFGTVF  633
            EV +  +LF EG + F  Y +++  P           +S  +   S+EEKE+LE F ++F
Sbjct  296  EVDIFIRLFKEGVKCFDLYSINKDPP-------TTASSSSISRTSSKEEKEVLELFASIF  348

Query  634  HCIDTATFHEVFHSEIPYLHELMFEHGALLHLPQFFLASEATSPAFSGMVLQYLMDRIHE  693
              +D ATF EVF S +P+L E + E+ ALL +PQFFL++++ SP F+ ++L++L+DR+ +
Sbjct  349  TILDPATFQEVFTSRMPFLFERILENPALLAIPQFFLSNDSVSPRFASILLRFLVDRLED  408

Query  694  VGTADMTKAKILLRMFKLSFMAVTLFSVQNEQVLHPHVTKIVTKCIELSVTAEEPMNYFL  753
            +G AD  K+ +LLR+FKL+FMAVTLF  +NE VL PH+ K++   ++L++ A+EP+NYFL
Sbjct  409  LGAADKKKSSVLLRLFKLAFMAVTLFPEENEAVLQPHLPKLILTSLKLALKAKEPLNYFL  468

Query  754  LLRSLFRSIGGGRFELLYKEILPLLEMLLETFNNLLLAARRPQERDLYVELTLTVPARLS  813
            LLR+LFRSIGGGRFELLYKE+LPLL +LLE  N LL +A RP  RDL+VEL LTVP RLS
Sbjct  469  LLRALFRSIGGGRFELLYKEVLPLLPVLLEGLNRLLSSAHRPSMRDLFVELCLTVPVRLS  528

Query  814  HLLPHLSYLMRPIVVALRADSDLVGQGLRTLELCVDNLTADYLDPIMAPIMDELMTALWD  873
             LLP+LS LM+P+V+AL +  +LV QGLRTLELCVDNLT ++LDPIM P++D+LM ALW 
Sbjct  529  VLLPYLSLLMKPLVLALNSSPELVSQGLRTLELCVDNLTPEFLDPIMQPVIDDLMQALWK  588

Query  874  HLRPH  878
            HLRP 
Sbjct  589  HLRPL  593


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 276 bits (708),  Expect = 3e-83, Method: Composition-based stats.
 Identities = 107/384 (28%), Positives = 150/384 (39%), Gaps = 75/384 (20%)

Query  2779  NDLLLEAAWRNIENWQSEGNREQIESLIKSVSDAPTPRRTFFQAFMSLLQFHLKKENLQD  2838
               L  EAAWR        G  + +   + S+    +P + FF+A ++L +         +
Sbjct  1     APLAAEAAWRL-------GQWDLMREYL-SLMKKDSPDKAFFEAILALHR-----NQFDE  47

Query  2839  FNGVCDESIQLSIRKWLQLPKNITNAHIPILQHFQLLVELHDASHICASLSQTNERNLDT  2898
                  +++ QL   +   L     N   P+L   Q L EL +       L Q        
Sbjct  48    AERYIEKARQLLDTELSALSGESYNRAYPLLVRLQQLAELEEIIQYKQKLGQ--------  99

Query  2899  KSAELKLLLGTWRDRLPNLWDDINAWQDLVTWRQHIFQLINATYLSLLPPQTNNVASNSY  2958
              S ELK LL TWR+RLP   DD+  WQD++T R  +   I   YL               
Sbjct  100   SSEELKSLLQTWRNRLPGCQDDVEIWQDILTVRSLVLSPIEDVYL---------------  144

Query  2959  AYRGYHETAWIINRFAHVARKHQMPEVCINQLSRI------------------YTLPNIE  3000
                GYH   W+  +FA++ARK     +    L ++                  Y  P  E
Sbjct  145   --GGYHAEMWL--KFANLARKSGRFSLAEKALLKLLGEDPEEWLPEVVYAYAKYLWPTGE  200

Query  3001  IQEAFLKLREQAKCHYQNPKELNSGLDVINNTNLNYFGAQQKAEFYTLKGMFLAKLNH--  3058
              QEA LKLRE   C+ Q   EL SGL+VIN TNL  F     A  Y LKG + A L    
Sbjct  201   QQEALLKLREFLSCYLQKNGELLSGLEVINPTNLEEFTELL-ARCYLLKGKWQAALGQNW  259

Query  3059  ----VNEANEAFGVALYYDLRLAKAWSEWGQYSDQRFKA--------DPSDY-ELASNAV  3105
                   E  +A+ +A  +D    KAW  W  ++ +  +          P D       AV
Sbjct  260   AEEKSEEILQAYLLATQFDPSWYKAWHTWALFNFEVLRKEEQGKEEEGPEDLSRYVVPAV  319

Query  3106  SCYLEAAGLYKNAKSRKLLSRILW  3129
               YL +  L     S +   R+L 
Sbjct  320   EGYLRSLSLSSE-NSLQDTLRLLT  342


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 133 bits (338),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 99/261 (38%), Gaps = 25/261 (10%)

Query  3553  PFAVQHPAARHCRREERILQLFRIFNGLLGKRKESRRRNLYFHLPLMVPLAPHIRLVRDD  3612
              +   +      R++E ILQ+F++ +  L K     RR        ++PL P   ++   
Sbjct  1     GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  3613  PSYISMQGIFEDYCRRVGTSKDEPVLFTMEKMRSLAETKQNRTPDQQQVLRTEILTAIQE  3672
             P+  ++  I ++Y          P    ++ + S               L    L    E
Sbjct  58    PNSETLAYILDEYG-----ENGVPPTAMVKILHS--------------ALNYPKLKLEFE  98

Query  3673  KW---VPSTIVKDYFQKTYPNFASFWLFRRQFSYQYAAIAFMTYVMHMGNRYPNKIMISR  3729
                   P   +  +F K  P+   +   R+ F    A  + + Y++  G+R+ + I++ +
Sbjct  99    SRISLPPKVGLLQWFVKKSPDAEEWGEARKNFVRSCAGYSVLDYILGNGDRHLDNILVDK  158

Query  3730  STGDIWGTELIPAINPAKAFFYNPEHVPFRFTPNIQTLMGPIATEGLFACALMAIARCLT  3789
             +TG ++  +    +  A      PE VPFR T  +   MGP   EGLF          L 
Sbjct  159   TTGKLFHIDFGLCLPDAGKDLPFPEKVPFRLTREMVYAMGPSGDEGLFRELCETAYEALR  218

Query  3790  EPRHELEQQLSIFVRDEMMFW  3810
                + L   L + V D +  W
Sbjct  219   RNLNLLTNLLKLMVADGLPDW  239



Lambda      K        H        a         alpha
   0.321    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 4677730850


Query= TCONS_00037524

Length=3896
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466357 pfam20206, Tra1_ring, Tra1 HEAT repeat ring region. Th...  1673    0.0  
CDD:466326 pfam20175, Tra1_central, Tra1 HEAT repeat central regi...  823     0.0  
CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  276     3e-83
CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  130     5e-34


>CDD:466357 pfam20206, Tra1_ring, Tra1 HEAT repeat ring region.  This entry 
represents part of the Tra1 protein composed of alpha solenoid 
repeats that form a ring region.
Length=1678

 Score = 1673 bits (4334),  Expect = 0.0, Method: Composition-based stats.
 Identities = 707/1771 (40%), Positives = 1035/1771 (58%), Gaps = 120/1771 (7%)

Query  890   RILGKLGGRNRKFLNHPPELTFEQFSDDSPSFDIKLIGPSEK-RPFPSSIGVDLAIRKLM  948
             RILGKLGGRNR+FL  PP+L +   + D  S  ++L   +   +  P    VDLA R L 
Sbjct  1     RILGKLGGRNRRFLKEPPKLEYRD-AGDEASLTVELEFGAPSDQTLPLDPAVDLAKRTLR  59

Query  949   EVPKTAAAKASDGYYKQQAFRMLSSQLKLYIGHENVPEDLAALLRLHANDLFEGKT--TA  1006
                    +  S  +Y++QAF +L S L L +  ++ P+DL A L+     L E K    A
Sbjct  60    -------SSTSLPHYRKQAFELLKSALALLLDSDDSPDDLLARLQAAIQPLLEVKIESEA  112

Query  1007  MTDILDKSERSSSI-AKKLAQEGTLKQLLKACIFATTLPDIEQSATAFVADVCKHFAVVE  1065
              +D+ + +   S+  AK   QE   KQ LK   FA ++ ++   A  F+  + +HF ++E
Sbjct  113   PSDLSNLNTDDSAAKAKAEEQEELFKQALKGLFFAASIKELRAEALPFLKGLLRHFTLLE  172

Query  1066  VGRALALARHNRKPFDVHSGEGPVYLDSRILAEAIVESLSSDNLRVRDGAEAAMQVMKDA  1125
             +   +   + +R+ F++   EGP  LD  +  +AIVESLSS++  +RD  E+ ++++ D 
Sbjct  173   LAEEIGPFKESRRRFNL---EGP--LDPLVFIDAIVESLSSESKELRDAGESVLKLILDT  227

Query  1126  AGIIFGAPERVANL--PFFQHLGRVFCHSCHSEEWFTKAGGSLGIRLFATKLDLGDSWLF  1183
                + G+ E V  L  P F +L   FCH C+ E W+ K GG LGIR+   +LDLG  W+ 
Sbjct  228   LVTLLGSKEVVDQLNEPLFHYLASRFCHLCYEEAWYRKLGGCLGIRILLERLDLGLKWVL  287

Query  1184  DKQFEFARALMYVIKDTPADLPASTRVSAGDTLDLILRRCC---KNVSKDDMKNEK--SR  1238
             D Q EF RAL++V+KD P ++P+     A DTL  IL+ C    K+  K      K  S+
Sbjct  288   DHQLEFVRALLFVLKDMPPEVPSGNVDDAKDTLLFILKVCNTPPKSTPKTTEGTAKQRSK  347

Query  1239  LWSLCGFFVYELSHMNKHVREASRRSFSTIAEVLGCQVHELIFPVKDRLLQSIFNKPLRA  1298
             L +L G  V ELS  N+ VRE ++++   +AE+ G  V EL+ PVK+RLLQ IF KPLRA
Sbjct  348   LNTLVGLLVSELSSSNEIVRETAQKALELLAELTGIPVTELLEPVKERLLQPIFTKPLRA  407

Query  1299  LPFPTQIGFIDAITFCLSLHNNIVTFNEPLNRLMLESLALADADDESLASKPNEFKNAEM  1358
             LPFP QIG IDAITFCLSL   ++ FNE L RL+ E+LALADA+D +L  +  ++KN   
Sbjct  408   LPFPMQIGHIDAITFCLSLRPPLLEFNEELVRLLHEALALADAEDAALVGRNPQYKNLTQ  467

Query  1359  IVNLRVACLRLLSMAMSFPEFANTPQNTSRARIISVFFKSLYSRSHDVIEAANAGLRDVL  1418
             ++ LRVAC+RLLS AM+ P+F    Q  +R RIISVFFKSLYSRS +V++AA+ GL+ VL
Sbjct  468   LIQLRVACIRLLSAAMACPDFLAPKQVNTRNRIISVFFKSLYSRSPEVVDAAHDGLKQVL  527

Query  1419  TQTNKLPKDLLQNGLRPILMNLQDPKRLSVAGLDGLARLLTLLTNYFKVEIGARLLDHMK  1478
              Q  KLPKDLLQ GLRPILMNL D KRL+VAGL+GLARLL LLTNYFKVEIG +LLDH++
Sbjct  528   AQQQKLPKDLLQTGLRPILMNLSDHKRLTVAGLEGLARLLELLTNYFKVEIGEKLLDHLR  587

Query  1479  VIADDAVLQKVSFSLVEQNQTIKIVTAIFNIFHLLPPAATSFMEHLVNKVLELEEKLRRT  1538
               AD  +LQ+ S   +E+N+ +KI  AI NIFHLLPPAA+ F+E LV  V++LE  LRR 
Sbjct  588   KWADPEMLQEASLKPLEENEEVKIAAAILNIFHLLPPAASKFLEDLVKLVIQLEAVLRRY  647

Query  1539  SNSPFRKPLVKYLNRYPKESLAFFQARFKEERFGRFFGQILADPESEALRAAVVADTE--  1596
              +SPFR+PL KYLNRYP+E++ FF  R  + R+ R F  IL  P++E LRA V +     
Sbjct  648   VSSPFREPLAKYLNRYPEEAVEFFLERLSDPRYSRLFRDILKSPDAEPLRAEVSSKPSRV  707

Query  1597  -GFKSAVFGQDSSDGRNTAAINGIYVVHSVCSYEATKRWLVSHGDLKTMLLNAGRDLEKK  1655
                   +F + +   +      G+ +V ++        WL S+ D+   LL   R L + 
Sbjct  708   SLLNIKLFLETADS-KTALRYQGLLIVRTLVKLNPN--WLPSNNDVLQALLQLWRSLHRL  764

Query  1656  LRSDRLPANERLRVEQAEDQLMDIFTIYLSESVQDLDFLFDLIDGLSSEELKRTLAFPKF  1715
              R     +    +  +    L+ I   YL ++  D+D LFDL++  +   +        F
Sbjct  765   QRLGNEDSLIHFQQLRESKLLLKILLQYLRQNPDDIDLLFDLLEIFTLPTVTDFSFLRDF  824

Query  1716  IYRHIITNESIDYRRSVIMRCLDLYGQRTCSQKMKTYAFHNLVNPIFAMDVQTTWNSPSN  1775
             +Y  +    S++ +R++++R L+++   T SQ +K  A  +L+NPI A   +       +
Sbjct  825   LYEEVALKYSVEQKRAILLRFLEMFPDPTTSQDLKVKALRHLINPILAASFE----RGES  880

Query  1776  SPKLMDKSMTESIQSRLWRPQLADLSEESTQAGVDHSRMELLQLSALLIKYHHQTVQDSR  1835
               +L+D  + + + +++W+P    L+ +      D  R+ELLQLS LL++Y  + + ++R
Sbjct  881   KEELVDADVIDQLHAKIWKP--LQLAGDDATFSDDGLRIELLQLSTLLVEYASELIGENR  938

Query  1836  KDIIKFAWNYIRLEDIINKYGAYVLISYFIAHYETPFKIVVQVYVALLRAHQNEGKALVT  1895
             KD+IKFAWN+++L+D   K  AYVLI+ FI  ++TP KIV+QVYVALL+AHQ EG+ALV 
Sbjct  939   KDLIKFAWNFLKLDDPTVKQAAYVLIARFIEAFDTPPKIVLQVYVALLKAHQPEGRALVR  998

Query  1896  QALDVLAPVLPSRIMSATSNAQAPDTRYPLWAKWPRRILAEETANLQQVMSIFQFLVRHP  1955
             QALD+LAP LP R+          +  YP W KW +RIL EE  ++ Q++ I+Q +VRHP
Sbjct  999   QALDILAPALPKRL--------PENPGYPTWVKWTKRILVEEGHSIPQLVHIYQLIVRHP  1050

Query  1956  NLFYESREHFVPLIVPSLIKIAAPPNSNNESKKLALNLIGLIWQWEQRRVTSSRTAMTNG  2015
             +LFY +RE FVP +V SL K+  PPN+  E++KLA++L  LI +WE+RR  S   + ++ 
Sbjct  1051  DLFYPNRELFVPHMVTSLQKLGLPPNATTETRKLAVDLAELIIRWERRRSESMDVSESSN  1110

Query  2016  ILESPNARKRKLDDTQGTSSPSAALGPPSSHERTE----YIIPSDLRAAMTKYLITFITT  2071
                  + +   LD +    S +++          +    Y IP  LR  +  +LI F  T
Sbjct  1111  EESGGDKQTVPLDSSSSPKSFASSSASADPTMGADDSSNYPIPLSLRETVVNFLIRFACT  1170

Query  2072  VPERFPVPAARFRELPSSKPQPQQPPILTGDMIKKAVFLLRNLLSPEYWGDLDIEL--YQ  2129
               E                         +  +  +A+ LL++LLSP+ W D+ I+L  ++
Sbjct  1171  STE----------------------DSSSKGLSARALELLKDLLSPDLWPDVSIKLSFFE  1208

Query  2130  KITEPILAGEKADKPDEKHITSMINALQVVRVLLAVKPDEWITARLPLVQKLFEKPLRSD  2189
             K+           +  E  I  + NAL+++ ++L VKP+ WI + L  +QKL EK L+SD
Sbjct  1209  KVLAQ-------TEVSENSIPQICNALEILNIVLEVKPNAWIISNLSQLQKLLEKCLKSD  1261

Query  2190  NPEIQDSLHGVEDSMDISPKLPPPVRRVLDALPEDQLEEEDAMDVENSPSEFVTYLSAIA  2249
             NP+IQ++L              P ++R+L+ALP      EDA +V +    F  ++  I 
Sbjct  1262  NPKIQEALR-------------PILKRILEALPVSVEGSEDAEEVSS----FYKFIETII  1304

Query  2250  TETLSANNY---ISSLNTLWTLSKNKPAEMDTHILPVMKAFSQKLAKEHVA---ASTNNQ  2303
             TE LS+      + +L+ L   +K++P  +D  I  +MK   QKL KEH+A      ++ 
Sbjct  1305  TEGLSSLTNTGLLGTLSLLSAWAKHRPDYIDPFIPSLMKVL-QKLVKEHLAANSQDASSS  1363

Query  2304  QAQYPPGAAKPAENLPDQQEYEIGVDLILKTIELISVRMSHLGEQRRPFLSVLAQLVERS  2363
              A  PP               E   +L++KT+EL+ +R+SHLGEQRR FLS L QL+E+S
Sbjct  1364  SASPPPF--------------ESTAELLIKTLELLKLRVSHLGEQRRWFLSALVQLIEKS  1409

Query  2364  QNEALCTKILNMVETWIFHSTESWPTLKEKTAVLHKMLLFETRADQKMLKKFLDLVIRIY  2423
              +  L   IL+MV  WI   TE +PT+KEK  +L KM+ FE R D  +   FLDL++ IY
Sbjct  1410  NDVELLRTILDMVREWIKEQTEGFPTIKEKAGLLVKMMSFEFRGDAALSADFLDLILDIY  1469

Query  2424  EDSKITRTELTVRLEHAFLIGTRAQDVEMRNRFMNIFDRSLTRLASSRLSYVLTCQNWDT  2483
             ED  + R+ELTVRLE AFL+G R+ D ++R +F  IFD SL+R  + RL Y+L  QNW++
Sbjct  1470  EDPALARSELTVRLEPAFLMGLRSSDPKIRKKFFAIFDNSLSRSLAERLLYILGVQNWES  1529

Query  2484  LADSFWLAQASHLILGCVDMTAPARLHPDDFTVYPLSFLLSNAEKDARKADIMVDIQLEA  2543
             L D +W+ QA  L+LG VD   P  L     ++  L+ L    E D  ++  M D +L+ 
Sbjct  1530  LGDHYWIKQALDLLLGSVDKDNPLSLSESSASIPSLTALE---EADKEESYEMEDDELDK  1586

Query  2544  FISDRKRFIADIGDVRIRDLMEPLCQLQHTDPRVAYSLWTTLFPIFWSTLSREDRIDLEK  2603
              +S  + F+ ++  V + DL++PL QL H D  + + LW +LFP  WS LSR ++ DL K
Sbjct  1587  LLSGHRAFLDELRSVTLGDLLDPLRQLLHQDSNLTHKLWVSLFPAAWSALSRREQEDLTK  1646

Query  2604  GMVTLITREYHQRQLDKRPNVVQALLEGAVR  2634
              +V L++++YH +Q DKRPNV+Q LLEG  R
Sbjct  1647  AIVPLLSKDYHSKQADKRPNVIQTLLEGVAR  1677


>CDD:466326 pfam20175, Tra1_central, Tra1 HEAT repeat central region.  This 
entry represents part of the Tra1 protein composed of alpha 
solenoid repeats that forms the central region. This is named 
as central due to its position relative to the ring region.
Length=593

 Score = 823 bits (2127),  Expect = 0.0, Method: Composition-based stats.
 Identities = 309/605 (51%), Positives = 412/605 (68%), Gaps = 18/605 (3%)

Query  280  AFGEFITAQVKTMSFLAYLLRMYAHQLQDFLPTLPSVVVRLLQDCPREKSSARKELLVAI  339
             +G+FI AQVKT+SFLAYLLR +A QL+ +   LP +VVRLLQDCP E SS RKELLVA 
Sbjct  1    LYGDFIAAQVKTLSFLAYLLRGFAEQLRPYQDKLPEIVVRLLQDCPPEASSTRKELLVAT  60

Query  340  RHIINFNYRKIFLEKIDELLDERTLIGDGLTVYETMRPLAYSMLADLIHHVRDHLTRDQI  399
            RHI++  +R  F+  ID LLDE+ LIG G+T YET+RPLAYSMLADLIHHVR  L+ +Q+
Sbjct  61   RHILSTEFRSGFVPHIDLLLDEKVLIGTGVTSYETLRPLAYSMLADLIHHVRAELSIEQL  120

Query  400  RRTVEVYTKNLHDDFPGTSFQTMSAKLLLNMAERIAKLDDKR--EARYFLIMILDAIGDK  457
             + V +Y+KNLHD     S QTMSAKLLLN+ + I K DDK   EAR  L+ IL+   +K
Sbjct  121  SKVVSIYSKNLHDPTLPPSIQTMSAKLLLNLVDSIVKKDDKDPQEARDLLVRILETFVEK  180

Query  458  FAWINYQFDNAVKVSKAYKAGKKDIEPSSERYLADKENPPDWDEIDIFSASPIKTSN---  514
               +N  +   +K  +  K+ K+  E +S    AD++ P D D ++  +    K      
Sbjct  181  LKSLNRYYPPLLKQHRKKKSEKE--EKTSADVDADEDRPADIDTVEYLAIERAKPIEGIQ  238

Query  515  -PRDRGGDPVSDNIFLFKNLINGLKNIFHQLKNCNPEHIQIDPNNVPINWPEVSYGYNAE  573
             P     DP+ D  FLFK L++GLK I   L+NC P   Q    N P  W  V+ G   E
Sbjct  239  FPSPSPVDPLKDARFLFKTLLHGLKTIIWGLRNCQPTPPQ---QNAPSGWNSVARGLPPE  295

Query  574  EVRVIKKLFHEGARVFKYYGVDQPAPEVTYSSPFDFLASQYTAPMSREEKELLESFGTVF  633
            EV +  +LF EG + F  Y +++  P           +S  +   S+EEKE+LE F ++F
Sbjct  296  EVDIFIRLFKEGVKCFDLYSINKDPP-------TTASSSSISRTSSKEEKEVLELFASIF  348

Query  634  HCIDTATFHEVFHSEIPYLHELMFEHGALLHLPQFFLASEATSPAFSGMVLQYLMDRIHE  693
              +D ATF EVF S +P+L E + E+ ALL +PQFFL++++ SP F+ ++L++L+DR+ +
Sbjct  349  TILDPATFQEVFTSRMPFLFERILENPALLAIPQFFLSNDSVSPRFASILLRFLVDRLED  408

Query  694  VGTADMTKAKILLRMFKLSFMAVTLFSVQNEQVLHPHVTKIVTKCIELSVTAEEPMNYFL  753
            +G AD  K+ +LLR+FKL+FMAVTLF  +NE VL PH+ K++   ++L++ A+EP+NYFL
Sbjct  409  LGAADKKKSSVLLRLFKLAFMAVTLFPEENEAVLQPHLPKLILTSLKLALKAKEPLNYFL  468

Query  754  LLRSLFRSIGGGRFELLYKEILPLLEMLLETFNNLLLAARRPQERDLYVELTLTVPARLS  813
            LLR+LFRSIGGGRFELLYKE+LPLL +LLE  N LL +A RP  RDL+VEL LTVP RLS
Sbjct  469  LLRALFRSIGGGRFELLYKEVLPLLPVLLEGLNRLLSSAHRPSMRDLFVELCLTVPVRLS  528

Query  814  HLLPHLSYLMRPIVVALRADSDLVGQGLRTLELCVDNLTADYLDPIMAPIMDELMTALWD  873
             LLP+LS LM+P+V+AL +  +LV QGLRTLELCVDNLT ++LDPIM P++D+LM ALW 
Sbjct  529  VLLPYLSLLMKPLVLALNSSPELVSQGLRTLELCVDNLTPEFLDPIMQPVIDDLMQALWK  588

Query  874  HLRPH  878
            HLRP 
Sbjct  589  HLRPL  593


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 276 bits (708),  Expect = 3e-83, Method: Composition-based stats.
 Identities = 107/384 (28%), Positives = 150/384 (39%), Gaps = 75/384 (20%)

Query  2779  NDLLLEAAWRNIENWQSEGNREQIESLIKSVSDAPTPRRTFFQAFMSLLQFHLKKENLQD  2838
               L  EAAWR        G  + +   + S+    +P + FF+A ++L +         +
Sbjct  1     APLAAEAAWRL-------GQWDLMREYL-SLMKKDSPDKAFFEAILALHR-----NQFDE  47

Query  2839  FNGVCDESIQLSIRKWLQLPKNITNAHIPILQHFQLLVELHDASHICASLSQTNERNLDT  2898
                  +++ QL   +   L     N   P+L   Q L EL +       L Q        
Sbjct  48    AERYIEKARQLLDTELSALSGESYNRAYPLLVRLQQLAELEEIIQYKQKLGQ--------  99

Query  2899  KSAELKLLLGTWRDRLPNLWDDINAWQDLVTWRQHIFQLINATYLSLLPPQTNNVASNSY  2958
              S ELK LL TWR+RLP   DD+  WQD++T R  +   I   YL               
Sbjct  100   SSEELKSLLQTWRNRLPGCQDDVEIWQDILTVRSLVLSPIEDVYL---------------  144

Query  2959  AYRGYHETAWIINRFAHVARKHQMPEVCINQLSRI------------------YTLPNIE  3000
                GYH   W+  +FA++ARK     +    L ++                  Y  P  E
Sbjct  145   --GGYHAEMWL--KFANLARKSGRFSLAEKALLKLLGEDPEEWLPEVVYAYAKYLWPTGE  200

Query  3001  IQEAFLKLREQAKCHYQNPKELNSGLDVINNTNLNYFGAQQKAEFYTLKGMFLAKLNH--  3058
              QEA LKLRE   C+ Q   EL SGL+VIN TNL  F     A  Y LKG + A L    
Sbjct  201   QQEALLKLREFLSCYLQKNGELLSGLEVINPTNLEEFTELL-ARCYLLKGKWQAALGQNW  259

Query  3059  ----VNEANEAFGVALYYDLRLAKAWSEWGQYSDQRFKA--------DPSDY-ELASNAV  3105
                   E  +A+ +A  +D    KAW  W  ++ +  +          P D       AV
Sbjct  260   AEEKSEEILQAYLLATQFDPSWYKAWHTWALFNFEVLRKEEQGKEEEGPEDLSRYVVPAV  319

Query  3106  SCYLEAAGLYKNAKSRKLLSRILW  3129
               YL +  L     S +   R+L 
Sbjct  320   EGYLRSLSLSSE-NSLQDTLRLLT  342


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 130 bits (330),  Expect = 5e-34, Method: Composition-based stats.
 Identities = 54/274 (20%), Positives = 98/274 (36%), Gaps = 35/274 (13%)

Query  3553  PFAVQHPAARHCRREERILQLFRIFNGLLGKRKESRRRNLYFHLPLMVPLAPHIRLVRDD  3612
              +   +      R++E ILQ+F++ +  L K     RR        ++PL P   ++   
Sbjct  1     GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  3613  PSYISMQGIFEDYCRRVGTSKDEPVLFTMEKMRSLAETKQNVRQTDNLMVKRANVSQRTP  3672
             P+                           E +  + +           MVK  + +   P
Sbjct  58    PNS--------------------------ETLAYILDEYGENGVPPTAMVKILHSALNYP  91

Query  3673  DQQQVLRTEILTAIQEKWVPSTIVKDYFQKTYPNFASFWLFRRQFSYQYAAIAFMTYVMH  3732
               +    + I         P   +  +F K  P+   +   R+ F    A  + + Y++ 
Sbjct  92    KLKLEFESRISL------PPKVGLLQWFVKKSPDAEEWGEARKNFVRSCAGYSVLDYILG  145

Query  3733  MGNRYPNKIMISRSTGDIWGTELIPAINPAKAFFYNPEHVPFRFTPNIQTLMGPIATEGL  3792
              G+R+ + I++ ++TG ++  +    +  A      PE VPFR T  +   MGP   EGL
Sbjct  146   NGDRHLDNILVDKTTGKLFHIDFGLCLPDAGKDLPFPEKVPFRLTREMVYAMGPSGDEGL  205

Query  3793  FACALMAIARCLTEPRHELEQQLSIFVRDEMMFW  3826
             F          L    + L   L + V D +  W
Sbjct  206   FRELCETAYEALRRNLNLLTNLLKLMVADGLPDW  239



Lambda      K        H        a         alpha
   0.321    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 4697556994


Query= TCONS_00043099

Length=2062
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:466357 pfam20206, Tra1_ring, Tra1 HEAT repeat ring region. Th...  860     0.0  
CDD:396714 pfam02259, FAT, FAT domain. The FAT domain is named af...  270     1e-81
CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and...  87.0    4e-19


>CDD:466357 pfam20206, Tra1_ring, Tra1 HEAT repeat ring region.  This entry 
represents part of the Tra1 protein composed of alpha solenoid 
repeats that form a ring region.
Length=1678

 Score = 860 bits (2224),  Expect = 0.0, Method: Composition-based stats.
 Identities = 355/970 (37%), Positives = 542/970 (56%), Gaps = 114/970 (12%)

Query  1     MDIFTIYLSESVQDLDFLFDLIDGLSSEEL------------------------KLIMRC  36
             + I   YL ++  D+D LFDL++  +   +                         +++R 
Sbjct  786   LKILLQYLRQNPDDIDLLFDLLEIFTLPTVTDFSFLRDFLYEEVALKYSVEQKRAILLRF  845

Query  37    LDLYGQRTCSQKMKTYAFHNLVNPIFAMDVQTTWNSPSNSPKLMDKSMTESIQSRLWRPQ  96
             L+++   T SQ +K  A  +L+NPI A   +       +  +L+D  + + + +++W+P 
Sbjct  846   LEMFPDPTTSQDLKVKALRHLINPILAASFE----RGESKEELVDADVIDQLHAKIWKP-  900

Query  97    LADLSEESTQAGVDHSRMELLQLSALLIKYHHQTVQDSRKDIIKFAWNYIRLEDIINKYG  156
                L+ +      D  R+ELLQLS LL++Y  + + ++RKD+IKFAWN+++L+D   K  
Sbjct  901   -LQLAGDDATFSDDGLRIELLQLSTLLVEYASELIGENRKDLIKFAWNFLKLDDPTVKQA  959

Query  157   AYVLISYFIAHYETPFKIVVQVYVALLRAHQNEGKALVTQALDVLAPVLPSRIMSATSNA  216
             AYVLI+ FI  ++TP KIV+QVYVALL+AHQ EG+ALV QALD+LAP LP R+       
Sbjct  960   AYVLIARFIEAFDTPPKIVLQVYVALLKAHQPEGRALVRQALDILAPALPKRL-------  1012

Query  217   QAPDTRYPLWAKWPRRILAEETANLQQVMSIFQFLVRHPNLFYESREHFVPLIVPSLIKI  276
                +  YP W KW +RIL EE  ++ Q++ I+Q +VRHP+LFY +RE FVP +V SL K+
Sbjct  1013  -PENPGYPTWVKWTKRILVEEGHSIPQLVHIYQLIVRHPDLFYPNRELFVPHMVTSLQKL  1071

Query  277   AAPPNSNNESKKLALNLIGLIWQWEQRRVTSSRTAMTNGILESPNARKRKLDDTQGTSSP  336
               PPN+  E++KLA++L  LI +WE+RR  S   + ++      + +   LD +    S 
Sbjct  1072  GLPPNATTETRKLAVDLAELIIRWERRRSESMDVSESSNEESGGDKQTVPLDSSSSPKSF  1131

Query  337   SAALGPPSSHERTE----YIIPSDLRAAMTKYLITFITTVPERFPVPAARFRELPSSKPQ  392
             +++          +    Y IP  LR  +  +LI F  T  E                  
Sbjct  1132  ASSSASADPTMGADDSSNYPIPLSLRETVVNFLIRFACTSTE------------------  1173

Query  393   PQQPPILTGDMIKKAVFLLRNLLSPEYWGDLDIEL--YQKITEPILAGEKADKPDEKHIT  450
                    +  +  +A+ LL++LLSP+ W D+ I+L  ++K+           +  E  I 
Sbjct  1174  ----DSSSKGLSARALELLKDLLSPDLWPDVSIKLSFFEKVLAQ-------TEVSENSIP  1222

Query  451   SMINALQVVRVLLAVKPDEWITARLPLVQKLFEKPLRSDNPEIQDSLHGVEDSMDISPKL  510
              + NAL+++ ++L VKP+ WI + L  +QKL EK L+SDNP+IQ++L             
Sbjct  1223  QICNALEILNIVLEVKPNAWIISNLSQLQKLLEKCLKSDNPKIQEALR------------  1270

Query  511   PPPVRRVLDALPEDQLEEEDAMDVENSPSEFVTYLSAIATETLSANNY---ISSLNTLWT  567
              P ++R+L+ALP      EDA +V +    F  ++  I TE LS+      + +L+ L  
Sbjct  1271  -PILKRILEALPVSVEGSEDAEEVSS----FYKFIETIITEGLSSLTNTGLLGTLSLLSA  1325

Query  568   LSKNKPAEMDTHILPVMKAFSQKLAKEHVA---ASTNNQQAQYPPGAAKPAENLPDQQEY  624
              +K++P  +D  I  +MK   QKL KEH+A      ++  A  PP               
Sbjct  1326  WAKHRPDYIDPFIPSLMKVL-QKLVKEHLAANSQDASSSSASPPPF--------------  1370

Query  625   EIGVDLILKTIELISVRMSHLGEQRRPFLSVLAQLVERSQNEALCTKILNMVETWIFHST  684
             E   +L++KT+EL+ +R+SHLGEQRR FLS L QL+E+S +  L   IL+MV  WI   T
Sbjct  1371  ESTAELLIKTLELLKLRVSHLGEQRRWFLSALVQLIEKSNDVELLRTILDMVREWIKEQT  1430

Query  685   ESWPTLKEKTAVLHKMLLFETRADQKMLKKFLDLVIRIYEDSKITRTELTVRLEHAFLIG  744
             E +PT+KEK  +L KM+ FE R D  +   FLDL++ IYED  + R+ELTVRLE AFL+G
Sbjct  1431  EGFPTIKEKAGLLVKMMSFEFRGDAALSADFLDLILDIYEDPALARSELTVRLEPAFLMG  1490

Query  745   TRAQDVEMRNRFMNIFDRSLTRLASSRLSYVLTCQNWDTLADSFWLAQASHLILGCVDMT  804
              R+ D ++R +F  IFD SL+R  + RL Y+L  QNW++L D +W+ QA  L+LG VD  
Sbjct  1491  LRSSDPKIRKKFFAIFDNSLSRSLAERLLYILGVQNWESLGDHYWIKQALDLLLGSVDKD  1550

Query  805   APARLHPDDFTVYPLSFLLSNAEKDARKADIMVDIQLEAFISDRKRFIADIGDVRIRDLM  864
              P  L     ++  L+ L    E D  ++  M D +L+  +S  + F+ ++  V + DL+
Sbjct  1551  NPLSLSESSASIPSLTALE---EADKEESYEMEDDELDKLLSGHRAFLDELRSVTLGDLL  1607

Query  865   EPLCQLQHTDPRVAYSLWTTLFPIFWSTLSREDRIDLEKGMVTLITREYHQRQLDKRPNV  924
             +PL QL H D  + + LW +LFP  WS LSR ++ DL K +V L++++YH +Q DKRPNV
Sbjct  1608  DPLRQLLHQDSNLTHKLWVSLFPAAWSALSRREQEDLTKAIVPLLSKDYHSKQADKRPNV  1667

Query  925   VQALLEGAVR  934
             +Q LLEG  R
Sbjct  1668  IQTLLEGVAR  1677


>CDD:396714 pfam02259, FAT, FAT domain.  The FAT domain is named after FRAP, 
ATM and TRRAP.
Length=342

 Score = 270 bits (693),  Expect = 1e-81, Method: Composition-based stats.
 Identities = 107/384 (28%), Positives = 150/384 (39%), Gaps = 75/384 (20%)

Query  1079  NDLLLEAAWRNIENWQSEGNREQIESLIKSVSDAPTPRRTFFQAFMSLLQFHLKKENLQD  1138
               L  EAAWR        G  + +   + S+    +P + FF+A ++L +         +
Sbjct  1     APLAAEAAWRL-------GQWDLMREYL-SLMKKDSPDKAFFEAILALHR-----NQFDE  47

Query  1139  FNGVCDESIQLSIRKWLQLPKNITNAHIPILQHFQLLVELHDASHICASLSQTNERNLDT  1198
                  +++ QL   +   L     N   P+L   Q L EL +       L Q        
Sbjct  48    AERYIEKARQLLDTELSALSGESYNRAYPLLVRLQQLAELEEIIQYKQKLGQ--------  99

Query  1199  KSAELKLLLGTWRDRLPNLWDDINAWQDLVTWRQHIFQLINATYLSLLPPQTNNVASNSY  1258
              S ELK LL TWR+RLP   DD+  WQD++T R  +   I   YL               
Sbjct  100   SSEELKSLLQTWRNRLPGCQDDVEIWQDILTVRSLVLSPIEDVYL---------------  144

Query  1259  AYRGYHETAWIINRFAHVARKHQMPEVCINQLSRI------------------YTLPNIE  1300
                GYH   W+  +FA++ARK     +    L ++                  Y  P  E
Sbjct  145   --GGYHAEMWL--KFANLARKSGRFSLAEKALLKLLGEDPEEWLPEVVYAYAKYLWPTGE  200

Query  1301  IQEAFLKLREQAKCHYQNPKELNSGLDVINNTNLNYFGAQQKAEFYTLKGMFLAKLNH--  1358
              QEA LKLRE   C+ Q   EL SGL+VIN TNL  F     A  Y LKG + A L    
Sbjct  201   QQEALLKLREFLSCYLQKNGELLSGLEVINPTNLEEFTELL-ARCYLLKGKWQAALGQNW  259

Query  1359  ----VNEANEAFGVALYYDLRLAKAWSEWGQYSDQRFKA--------DPSDY-ELASNAV  1405
                   E  +A+ +A  +D    KAW  W  ++ +  +          P D       AV
Sbjct  260   AEEKSEEILQAYLLATQFDPSWYKAWHTWALFNFEVLRKEEQGKEEEGPEDLSRYVVPAV  319

Query  1406  SCYLEAAGLYKNAKSRKLLSRILW  1429
               YL +  L     S +   R+L 
Sbjct  320   EGYLRSLSLSSE-NSLQDTLRLLT  342


>CDD:395364 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
 Some members of this family probably do not have lipid 
kinase activity and are protein kinases.
Length=241

 Score = 87.0 bits (216),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 33/198 (17%), Positives = 70/198 (35%), Gaps = 35/198 (18%)

Query  1853  PFAVQHPAARHCRREERILQLFRIFNGLLGKRKESRRRNLYFHLPLMVPLAPHIRLVRDD  1912
              +   +      R++E ILQ+F++ +  L K     RR        ++PL P   ++   
Sbjct  1     GYGGIYKVGDDLRQDELILQVFKLMDEELSKDNLDLRR---LKPYSVIPLGPKCGIIEWV  57

Query  1913  PSYISMQGIFEDYCRRVGTSKDEPVLFTMEKMRSLAETKQNVRQTDNLMVKRANVSQRTP  1972
             P+                           E +  + +           MVK  + +   P
Sbjct  58    PNS--------------------------ETLAYILDEYGENGVPPTAMVKILHSALNYP  91

Query  1973  DQQQVLRTEILTAIQEKWVPSTIVKDYFQKTYPNFASFWLFRRQFSYQYAAIAFMTYVMH  2032
               +    + I         P   +  +F K  P+   +   R+ F    A  + + Y++ 
Sbjct  92    KLKLEFESRISL------PPKVGLLQWFVKKSPDAEEWGEARKNFVRSCAGYSVLDYILG  145

Query  2033  MGNRYPNKIMISRSTGDI  2050
              G+R+ + I++ ++TG +
Sbjct  146   NGDRHLDNILVDKTTGKL  163



Lambda      K        H        a         alpha
   0.319    0.133    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0720    0.140     1.90     42.6     43.6 

Effective search space used: 2583982246


Query= TCONS_00037526

Length=557


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 694909020


Query= TCONS_00037525

Length=739
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463743 pfam12895, ANAPC3, Anaphase-promoting complex, cycloso...  87.7    1e-21


>CDD:463743 pfam12895, ANAPC3, Anaphase-promoting complex, cyclosome, subunit 
3.  Apc3, otherwise known as Cdc27, is one of the subunits 
of the anaphase-promoting complex or cyclosome. The anaphase-promoting 
complex is a multiprotein subunit E3 ubiquitin 
ligase complex that controls segregation of chromosomes and 
exit from mitosis in eukaryotes. The protein members of this 
family contain TPR repeats just as those of Apc7 do, and 
it appears that these TPR units bind the C-termini of the APC 
co-activators CDH1 and CDC20.
Length=82

 Score = 87.7 bits (218),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 31/82 (38%), Positives = 45/82 (55%), Gaps = 1/82 (1%)

Query  14  NRGQHDAAIYIGDKVL-ALTNSDSDAFWLAQVHFSNNNYTRALALLSRKDLISRSTACRY  72
           ++ Q+  AI++ +++L A   S  DA+ LAQ  F N  Y RA  LL +  L   S  CRY
Sbjct  1   DQHQYKNAIFLAERLLAAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAKLNGSSLGCRY  60

Query  73  LAGHCYIKQNQFDQALSVLGDH  94
           L   C +K  ++D+AL  LG  
Sbjct  61  LFAQCLLKLKKYDEALDALGKA  82



Lambda      K        H        a         alpha
   0.317    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 938573040


Query= TCONS_00037528

Length=415


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 506389492


Query= TCONS_00037527

Length=557


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 694909020


Query= TCONS_00037529

Length=724
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463743 pfam12895, ANAPC3, Anaphase-promoting complex, cycloso...  88.1    9e-22


>CDD:463743 pfam12895, ANAPC3, Anaphase-promoting complex, cyclosome, subunit 
3.  Apc3, otherwise known as Cdc27, is one of the subunits 
of the anaphase-promoting complex or cyclosome. The anaphase-promoting 
complex is a multiprotein subunit E3 ubiquitin 
ligase complex that controls segregation of chromosomes and 
exit from mitosis in eukaryotes. The protein members of this 
family contain TPR repeats just as those of Apc7 do, and 
it appears that these TPR units bind the C-termini of the APC 
co-activators CDH1 and CDC20.
Length=82

 Score = 88.1 bits (219),  Expect = 9e-22, Method: Composition-based stats.
 Identities = 31/82 (38%), Positives = 45/82 (55%), Gaps = 1/82 (1%)

Query  14  NRGQHDAAIYIGDKVL-ALTNSDSDAFWLAQVHFSNNNYTRALALLSRKDLISRSTACRY  72
           ++ Q+  AI++ +++L A   S  DA+ LAQ  F N  Y RA  LL +  L   S  CRY
Sbjct  1   DQHQYKNAIFLAERLLAAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAKLNGSSLGCRY  60

Query  73  LAGHCYIKQNQFDQALSVLGDH  94
           L   C +K  ++D+AL  LG  
Sbjct  61  LFAQCLLKLKKYDEALDALGKA  82



Lambda      K        H        a         alpha
   0.317    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 916745760


Query= TCONS_00043100

Length=522


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 652562446


Query= TCONS_00043101

Length=608
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463743 pfam12895, ANAPC3, Anaphase-promoting complex, cycloso...  85.4    6e-21


>CDD:463743 pfam12895, ANAPC3, Anaphase-promoting complex, cyclosome, subunit 
3.  Apc3, otherwise known as Cdc27, is one of the subunits 
of the anaphase-promoting complex or cyclosome. The anaphase-promoting 
complex is a multiprotein subunit E3 ubiquitin 
ligase complex that controls segregation of chromosomes and 
exit from mitosis in eukaryotes. The protein members of this 
family contain TPR repeats just as those of Apc7 do, and 
it appears that these TPR units bind the C-termini of the APC 
co-activators CDH1 and CDC20.
Length=82

 Score = 85.4 bits (212),  Expect = 6e-21, Method: Composition-based stats.
 Identities = 31/82 (38%), Positives = 45/82 (55%), Gaps = 1/82 (1%)

Query  14  NRGQHDAAIYIGDKVL-ALTNSDSDAFWLAQVHFSNNNYTRALALLSRKDLISRSTACRY  72
           ++ Q+  AI++ +++L A   S  DA+ LAQ  F N  Y RA  LL +  L   S  CRY
Sbjct  1   DQHQYKNAIFLAERLLAAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAKLNGSSLGCRY  60

Query  73  LAGHCYIKQNQFDQALSVLGDH  94
           L   C +K  ++D+AL  LG  
Sbjct  61  LFAQCLLKLKKYDEALDALGKA  82



Lambda      K        H        a         alpha
   0.319    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 771124848


Query= TCONS_00037530

Length=739
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463743 pfam12895, ANAPC3, Anaphase-promoting complex, cycloso...  86.5    3e-21


>CDD:463743 pfam12895, ANAPC3, Anaphase-promoting complex, cyclosome, subunit 
3.  Apc3, otherwise known as Cdc27, is one of the subunits 
of the anaphase-promoting complex or cyclosome. The anaphase-promoting 
complex is a multiprotein subunit E3 ubiquitin 
ligase complex that controls segregation of chromosomes and 
exit from mitosis in eukaryotes. The protein members of this 
family contain TPR repeats just as those of Apc7 do, and 
it appears that these TPR units bind the C-termini of the APC 
co-activators CDH1 and CDC20.
Length=82

 Score = 86.5 bits (215),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 31/82 (38%), Positives = 45/82 (55%), Gaps = 1/82 (1%)

Query  14  NRGQHDAAIYIGDKVL-ALTSSDSDAFWLAQVHFSNNNYTRALALLSRKDLISRSTACRY  72
           ++ Q+  AI++ +++L A   S  DA+ LAQ  F N  Y RA  LL +  L   S  CRY
Sbjct  1   DQHQYKNAIFLAERLLAAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAKLNGSSLGCRY  60

Query  73  LAGHCYIKQNQFDQALSVLGDH  94
           L   C +K  ++D+AL  LG  
Sbjct  61  LFAQCLLKLKKYDEALDALGKA  82



Lambda      K        H        a         alpha
   0.317    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 938573040


Query= TCONS_00043102

Length=689
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463743 pfam12895, ANAPC3, Anaphase-promoting complex, cycloso...  86.2    4e-21


>CDD:463743 pfam12895, ANAPC3, Anaphase-promoting complex, cyclosome, subunit 
3.  Apc3, otherwise known as Cdc27, is one of the subunits 
of the anaphase-promoting complex or cyclosome. The anaphase-promoting 
complex is a multiprotein subunit E3 ubiquitin 
ligase complex that controls segregation of chromosomes and 
exit from mitosis in eukaryotes. The protein members of this 
family contain TPR repeats just as those of Apc7 do, and 
it appears that these TPR units bind the C-termini of the APC 
co-activators CDH1 and CDC20.
Length=82

 Score = 86.2 bits (214),  Expect = 4e-21, Method: Composition-based stats.
 Identities = 30/82 (37%), Positives = 44/82 (54%), Gaps = 1/82 (1%)

Query  14  NRGQHDAAIYIGDKVL-ALTSDDSDAFWLAQVHFSNNNYTRALALLSRKDLISRSTACRY  72
           ++ Q+  AI++ +++L A      DA+ LAQ  F N  Y RA  LL +  L   S  CRY
Sbjct  1   DQHQYKNAIFLAERLLAAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAKLNGSSLGCRY  60

Query  73  LAGHCYIKQNQFDQALSVLGDH  94
           L   C +K  ++D+AL  LG  
Sbjct  61  LFAQCLLKLKKYDEALDALGKA  82



Lambda      K        H        a         alpha
   0.317    0.131    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 878974840


Query= TCONS_00037531

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463743 pfam12895, ANAPC3, Anaphase-promoting complex, cycloso...  85.4    7e-21


>CDD:463743 pfam12895, ANAPC3, Anaphase-promoting complex, cyclosome, subunit 
3.  Apc3, otherwise known as Cdc27, is one of the subunits 
of the anaphase-promoting complex or cyclosome. The anaphase-promoting 
complex is a multiprotein subunit E3 ubiquitin 
ligase complex that controls segregation of chromosomes and 
exit from mitosis in eukaryotes. The protein members of this 
family contain TPR repeats just as those of Apc7 do, and 
it appears that these TPR units bind the C-termini of the APC 
co-activators CDH1 and CDC20.
Length=82

 Score = 85.4 bits (212),  Expect = 7e-21, Method: Composition-based stats.
 Identities = 30/82 (37%), Positives = 44/82 (54%), Gaps = 1/82 (1%)

Query  14  NRGQHDAAIYIGDKVL-ALTSDDSDAFWLAQVHFSNNNYTRALALLSRKDLISRSTACRY  72
           ++ Q+  AI++ +++L A      DA+ LAQ  F N  Y RA  LL +  L   S  CRY
Sbjct  1   DQHQYKNAIFLAERLLAAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAKLNGSSLGCRY  60

Query  73  LAGHCYIKQNQFDQALSVLGDH  94
           L   C +K  ++D+AL  LG  
Sbjct  61  LFAQCLLKLKKYDEALDALGKA  82



Lambda      K        H        a         alpha
   0.318    0.132    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 790552412


Query= TCONS_00037532

Length=739
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463743 pfam12895, ANAPC3, Anaphase-promoting complex, cycloso...  86.5    3e-21


>CDD:463743 pfam12895, ANAPC3, Anaphase-promoting complex, cyclosome, subunit 
3.  Apc3, otherwise known as Cdc27, is one of the subunits 
of the anaphase-promoting complex or cyclosome. The anaphase-promoting 
complex is a multiprotein subunit E3 ubiquitin 
ligase complex that controls segregation of chromosomes and 
exit from mitosis in eukaryotes. The protein members of this 
family contain TPR repeats just as those of Apc7 do, and 
it appears that these TPR units bind the C-termini of the APC 
co-activators CDH1 and CDC20.
Length=82

 Score = 86.5 bits (215),  Expect = 3e-21, Method: Composition-based stats.
 Identities = 30/82 (37%), Positives = 44/82 (54%), Gaps = 1/82 (1%)

Query  14  NRGQHDAAIYIGDKVL-ALTSDDSDAFWLAQVHFSNNNYTRALALLSRKDLISRSTACRY  72
           ++ Q+  AI++ +++L A      DA+ LAQ  F N  Y RA  LL +  L   S  CRY
Sbjct  1   DQHQYKNAIFLAERLLAAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAKLNGSSLGCRY  60

Query  73  LAGHCYIKQNQFDQALSVLGDH  94
           L   C +K  ++D+AL  LG  
Sbjct  61  LFAQCLLKLKKYDEALDALGKA  82



Lambda      K        H        a         alpha
   0.317    0.131    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 938573040


Query= TCONS_00043103

Length=336


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00043104

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00037534

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00037535

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:310354 pfam05686, Glyco_transf_90, Glycosyl transferase famil...  80.6    6e-17


>CDD:310354 pfam05686, Glyco_transf_90, Glycosyl transferase family 90.  
This family of glycosyl transferases are specifically (mannosyl) 
glucuronoxylomannan/galactoxylomannan -beta 1,2-xylosyltransferases, 
EC:2.4.2.-.
Length=396

 Score = 80.6 bits (199),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 75/344 (22%), Positives = 131/344 (38%), Gaps = 57/344 (17%)

Query  106  QCDAAFPGLYEDVFRAVTYWRSHGALAAEDLDRIRLEPGMARAAILRGELYVVAARSKGE  165
             C   F  ++ED+      WR  G +  E ++R + +    R  I+ G +YV       E
Sbjct  5    TCPDYFRWIHEDLEP----WRETG-ITREMVERAKRKAHF-RYVIINGRVYV-------E  51

Query  166  DHRRKILAVLSAIHRALVADS--LRSTRR------DIEFVFSVEDKVE-------DVTSA  210
             +            R +      L+  R+      D+E +F+  D             + 
Sbjct  52   TYGESFQT------RDVFTIWGILQLLRKYPGRLPDLELMFNCGDWPVVKKRDYRGPNAN  105

Query  211  EHPVWVLARAANEEAV-WLMPDFGYWAWDNPDNAIGPFDQVVARIQRAD--IPWEAKKQQ  267
              P+   +   +++ +  + PD+ +W W  P+  IG +D +   ++  +  + WE ++  
Sbjct  106  PPPL--FSYCGDDDTLDIVFPDWSFWGW--PEVNIGRWDLLRKDLKEGNTRVKWEDREPY  161

Query  268  LVWRGKPSFAPKLRRALIEATRDQP--WG------DVKQVSWPDRTNVLSMEDHCQYMFI  319
              WRG PS A   R  L++  R  P  W       D      P   +  S+ D C + + 
Sbjct  162  AYWRGNPSVAE-TRLELVKCNRSNPEDWDARLTNQDWDTEYRPGFKHS-SLVDQCTHKYK  219

Query  320  AHVEGRSYSASLKYRQACKSVIVAHKLQYIQHHHYLLAAEGPNQNYVEV--ERDFSDLAA  377
             ++EG ++S SLKY  AC S+++    +Y    +  L    P  +Y  +  + D  DL  
Sbjct  220  IYIEGVAWSVSLKYILACDSLVLHVGPEYYDFFYRGLK---PWVHYWPIKSDDDCRDLKE  276

Query  378  KLEPLMRDTSVAHHIANNSVKAFRERYLTKAAEACYWRHLFDGY  421
             ++        A  IA      F    L       Y  HL   Y
Sbjct  277  AVDWGNAHDDEAQKIAERG-SEFIRENLKMDDVYDYMFHLLTEY  319



Lambda      K        H        a         alpha
   0.322    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0683    0.140     1.90     42.6     43.6 

Effective search space used: 573605296


Query= TCONS_00043105

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00037539

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00037537

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00037536

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00037538

Length=291


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.139    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00037540

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  175     4e-50


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 175 bits (445),  Expect = 4e-50, Method: Composition-based stats.
 Identities = 115/444 (26%), Positives = 200/444 (45%), Gaps = 40/444 (9%)

Query  6    PLPSGLPILGNLLSISPGNTWGSFNKLAVNNKNFYPIFKITILGHDIVFITSAKLLEEI-  64
            P P  LP+ GNLL +         +      K + PIF++ +    +V ++  + ++E+ 
Sbjct  2    PGPPPLPLFGNLLQLGRKG--NLHSVFTKLQKKYGPIFRLYLGPKPVVVLSGPEAVKEVL  59

Query  65   CDEK-----RFRKCVTGPIVEIREAVHDSLFTAYHDEESWGIAHRIMAPLMTPEAVIDAF  119
              +      R  +    P               + +   W    R + P  T    +   
Sbjct  60   IKKGEEFSGRPDE----PWFATSRGPFLGKGIVFANGPRWRQLRRFLTPTFTSFGKLSFE  115

Query  120  AGMRETATDLVKKW--TAGPRQRINVSNDMDRLNHAANMLC--FFDQRIHCLEGPEPSVL  175
              + E A DLV+K   TAG    I++++ + R   A N++C   F +R   LE P+   L
Sbjct  116  PRVEEEARDLVEKLRKTAGEPGVIDITDLLFRA--ALNVICSILFGERFGSLEDPKFLEL  173

Query  176  QAMEAATFEALRRPT-----RPKVLKWLI--YQRRFDRYIKTMRDYAAEIVAKRRA----  224
                      L  P+        +LK+    + R+  R  K ++D   +++ +RR     
Sbjct  174  VKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKIKDLLDKLIEERRETLDS  233

Query  225  APTEKKDMLHAIMHGTDPQTGKALTESQYLDEIINLFI-GSATAANLVSFALYYLMKNPH  283
            A    +D L A++   + + G  LT+ +    ++ LF  G+ T ++ +S+ALY L K+P 
Sbjct  234  AKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPE  293

Query  284  EIARAREEIDAVVGGPAAQLEHEHLARLPYCEAILRESLRLSATAPGFNIEPIP-DLEQP  342
               + REEID V+G       ++ L  +PY +A+++E+LRL    P      +P ++ + 
Sbjct  294  VQEKLREEIDEVIGD-KRSPTYDDLQNMPYLDAVIKETLRLHPVVPLL----LPREVTKD  348

Query  343  VLLAGGEYQVPNKQPLIALLAAVNRDPEVFEDPDAFKPERMVGEKYDRLPSGVKKGFGNG  402
             ++ G  Y +P    +I  L A++RDPEVF +P+ F PER + E      S     FG G
Sbjct  349  TVIPG--YLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAG  406

Query  403  KRECFGKRYA-WEWSFMILVTIMK  425
             R C G+R A  E   + L T+++
Sbjct  407  PRNCLGERLARME-MKLFLATLLQ  429



Lambda      K        H        a         alpha
   0.321    0.137    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 576672704


Query= TCONS_00037541

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00043109

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00043110

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00037543

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00037544

Length=379


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 450469180


Query= TCONS_00037546

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395719 pfam00891, Methyltransf_2, O-methyltransferase. This f...  97.9    3e-24


>CDD:395719 pfam00891, Methyltransf_2, O-methyltransferase.  This family 
includes a range of O-methyltransferases. These enzymes utilize 
S-adenosyl methionine.
Length=208

 Score = 97.9 bits (244),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 86/197 (44%), Gaps = 26/197 (13%)

Query  211  GLFDYFYTEDLARGQRFALGMAGSE--IMKTLTEDMFPFESLPQGAKVVDVGGGRGHVSV  268
             LF+  Y ++  R   F  G+      I K +    F          +VDVGGG G ++ 
Sbjct  22   SLFEAIYRDEEERLL-FNRGLQEHWSLIGKDVLT-AFDLSGFRS---LVDVGGGTGALAQ  76

Query  269  RIAEKVPGL---NF----VVQDDESMLEAGQAEGVPKAVKDRIEFMPHDFFNEQPVKGAD  321
             I    PG     F    VV+   +   AG+          R+ F   DFF +  +  AD
Sbjct  77   AIVSLYPGCKGIVFDLPHVVEAAPTHFSAGEEP--------RVTFHGGDFFKD-SLPEAD  127

Query  322  VYLLRFILHDHSDSRCAKILSNIVDAMEPGKSRILIDDAIVPSFLGPESSRFFNLLDLYM  381
             Y+L+ +LHD SD +C K+L     A   G  ++++ ++++ +   P       L  L M
Sbjct  128  AYILKRVLHDWSDEKCVKLLKRCYKACPAG-GKVILVESLLGA--DPSGPLHTQLYSLNM  184

Query  382  LAGLNGKERTLEQWNYL  398
            LA   G+ERT  +++ L
Sbjct  185  LAQTEGRERTEAEYSEL  201



Lambda      K        H        a         alpha
   0.320    0.138    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 522993064


Query= TCONS_00043112

Length=81


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.141    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80856692


Query= TCONS_00037547

Length=232


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.123    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 244426736


Query= TCONS_00037548

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00043113

Length=243


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.126    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00043114

Length=165


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.125    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 147057140


Query= TCONS_00037549

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00043115

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00037550

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00043116

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00037551

Length=74


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82366878


Query= TCONS_00037552

Length=1362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463904 pfam13507, GATase_5, CobB/CobQ-like glutamine amidotra...  421     2e-138
CDD:465635 pfam18076, FGAR-AT_N, Formylglycinamide ribonucleotide...  148     4e-42 
CDD:460684 pfam02769, AIRS_C, AIR synthase related protein, C-ter...  112     5e-29 
CDD:465632 pfam18072, FGAR-AT_linker, Formylglycinamide ribonucle...  93.7    6e-24 


>CDD:463904 pfam13507, GATase_5, CobB/CobQ-like glutamine amidotransferase 
domain.  This family captures members that are not found in 
pfam00310, pfam07685 and pfam13230.
Length=260

 Score = 421 bits (1085),  Expect = 2e-138, Method: Composition-based stats.
 Identities = 151/271 (56%), Positives = 181/271 (67%), Gaps = 16/271 (6%)

Query  1096  KPRVAILREQGVNSQAEMAFAFNVAGFSAIDVHMTDIISGRVSLSSFVGLAACGGFSYGD  1155
             KPRVAILRE G N + EMA AF  AGF A+DVHM+D++SGRVSL  F GLAA GGFSYGD
Sbjct  1     KPRVAILREPGTNGEYEMAAAFERAGFDAVDVHMSDLLSGRVSLDDFQGLAAPGGFSYGD  60

Query  1156  VLGAGQGWAKSVLLHENTRTEFQSFFQRPDTFALGVCNGCQFLSRLKELIPG-----ASN  1210
             VLG+G+GWA S+L +   R  F++FF RPDTF+LG+CNGCQ LS+L  LIPG     A  
Sbjct  61    VLGSGKGWAASILFNPKLRDAFEAFFNRPDTFSLGICNGCQLLSKLG-LIPGGEGDLAER  119

Query  1211  WPSFERNASEQYEGRVCMVRISDPDPANPSVFLHGMNGSSLPIAVAHGEGRASFAAAPGT  1270
             WP+  RN S ++E R   V+IS     +PSVFL GM+GS LP  VAHGEGR  F +    
Sbjct  120   WPTLTRNDSGRFESRWVNVKIS---EKSPSVFLRGMDGSGLP--VAHGEGRFVFRSE--E  172

Query  1271  SAQDFVHQGLAPVQYVDNATLKPTMKYPFNPNGSPEGIAGIRSADGRVLAIMPHPERTVM  1330
                     G   ++YVDNA   PT +YPFNPNGSP GIAGI S DGRVL +MPHPER   
Sbjct  173   VLARLEANGQVALRYVDNA-GNPTEEYPFNPNGSPLGIAGICSPDGRVLGLMPHPERVFR  231

Query  1331  GGIASWLPPNAEEWGDIGPWGRVFFSARRWV  1361
                    PP   EW ++ PW R+F +AR+WV
Sbjct  232   PWQWPHWPP--GEWEEVSPWLRLFRNARKWV  260


>CDD:465635 pfam18076, FGAR-AT_N, Formylglycinamide ribonucleotide amidotransferase 
N-terminal.  This is the N-terminal domain found 
in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT), 
also known as Phosphoribosylformylglycinamidine synthase 
(EC:6.3.5.3), PurL and formylglycinamidine ribonucleotide (FGAM) 
synthase. This enzyme catalyzes the ATP-dependent conversion 
of formylglycinamide ribonucleotide and glutamine to 
formylglycinamidine ribonucleotide, ADP, Pi, and glutamate in 
the fourth step of the purine biosynthetic pathway.
Length=115

 Score = 148 bits (376),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 8/122 (7%)

Query  39   QWIHYVHAERPLDAQQQGVLEQLLRYGDITDVPASFGPEDGSFDVFYVFPRTGTISPWSS  98
            +++H+V  E PL A ++  LEQLL YG   + P   G      ++  V PR GTISPWSS
Sbjct  1    EYVHFVELEAPLSAAERARLEQLLTYGPPLEEPEPEG------ELLLVTPRLGTISPWSS  54

Query  99   QATGISHVCGLRQYVKRIERGIKISC-LREKTQEFKPGFEDVLHDRMTQLLSQTEPDLHL  157
            +AT I+H CGL   V+RIERGI      +  +         +LHDRMT+ +     D   
Sbjct  55   KATDIAHNCGLDA-VRRIERGIAYYLTGKPLSAAELAALAALLHDRMTESVLTDLEDAAA  113

Query  158  MF  159
            +F
Sbjct  114  LF  115


>CDD:460684 pfam02769, AIRS_C, AIR synthase related protein, C-terminal domain. 
 This family includes Hydrogen expression/formation protein 
HypE, AIR synthases EC:6.3.3.1, FGAM synthase EC:6.3.5.3 
and selenide, water dikinase EC:2.7.9.3. The function of 
the C-terminal domain of AIR synthase is unclear, but the cleft 
formed between N and C domains is postulated as a sulphate 
binding site.
Length=152

 Score = 112 bits (281),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 46/149 (31%), Positives = 72/149 (48%), Gaps = 8/149 (5%)

Query  449  KPGSYLVVLGGPAMLIGLGGGAASSVASGEGSADLDFASVQRGNAEVQRRAQEVINACVA  508
            KPG  L++LG      GL G   S     +G  D   A+VQ G+  ++     V     A
Sbjct  1    KPGDVLILLGS----SGLHGAGLSLSR--KGLEDSGLAAVQLGDPLLEPTLIYVKLLLAA  54

Query  509  MGENNPIKFIHDVGAGGLSNALPELIHDSGLGATFELREVDSADKSMSPMQIWCCEAQER  568
            +G    +K +HD+  GGL+ AL E+   SG+GA  +L +V   ++ M P+++   E Q R
Sbjct  55   LG--GLVKAMHDITGGGLAGALAEMAPASGVGAEIDLDKVPIFEELMLPLEMLLSENQGR  112

Query  569  YVLAVGEEGMNKFTAIAHRERCGFSVVGR  597
             ++ V  E      AI  +E    +V+G 
Sbjct  113  GLVVVAPEEAEAVLAILEKEGLEAAVIGE  141


 Score = 66.6 bits (163),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 34/156 (22%), Positives = 48/156 (31%), Gaps = 17/156 (11%)

Query  866   VGDTVLMFVDLSFGRKTLGGSALAQVFNQVGDECPD--LRDVEIFRDFFDATQQL-QEAG  922
              GD +++           G                   L D  +          L    G
Sbjct  2     PGDVLILLGSSGLH----GAGLSLSRKGLEDSGLAAVQLGDPLLEPTLIYVKLLLAALGG  57

Query  923   IVLAYHDRSDGGLFTTLAEMMFAGRCGVEIMLDNI---CPTNSTQDLVSTLFTEELG-AV  978
             +V A HD + GGL   LAEM  A   G EI LD +          ++   L +E  G  +
Sbjct  58    LVKAMHDITGGGLAGALAEMAPASGVGAEIDLDKVPIFEELMLPLEM---LLSENQGRGL  114

Query  979   FQVRKEHEIQFRSCFATCGPPAGLIHKIGRVSERPK  1014
               V  E      +     G  A     IG V+   +
Sbjct  115   VVVAPEEAEAVLAILEKEGLEA---AVIGEVTAGGR  147


>CDD:465632 pfam18072, FGAR-AT_linker, Formylglycinamide ribonucleotide amidotransferase 
linker domain.  This is the linker domain found 
in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT), 
also known as Phosphoribosylformylglycinamidine synthase 
(EC:6.3.5.3), PurL and formylglycinamidine ribonucleotide 
(FGAM) synthase. This enzyme catalyzes the ATP-dependent 
conversion of formylglycinamide ribonucleotide (FGAR) and glutamine 
to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, 
and glutamate in the fourth step of the purine biosynthetic 
pathway. The structure analysis of Salmonella typhimurium 
FGAR-AT reveals that this linker domain is made up of a long 
hydrophilic belt with an extended conformation.
Length=50

 Score = 93.7 bits (234),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 39/53 (74%), Gaps = 3/53 (6%)

Query  183  LQEANKRLGLALEQSEIDYLADAYGPNGPLARDPTDVELFMFAQVNSEHCRHK  235
            L+EAN+ LGLAL   EIDYL + +     L R+PTDVEL MFAQ+ SEHCRHK
Sbjct  1    LEEANRYLGLALSDDEIDYLVEYFAG---LGRNPTDVELGMFAQMWSEHCRHK  50



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1740022400


Query= TCONS_00043118

Length=1362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463904 pfam13507, GATase_5, CobB/CobQ-like glutamine amidotra...  421     2e-138
CDD:465635 pfam18076, FGAR-AT_N, Formylglycinamide ribonucleotide...  148     4e-42 
CDD:460684 pfam02769, AIRS_C, AIR synthase related protein, C-ter...  112     5e-29 
CDD:465632 pfam18072, FGAR-AT_linker, Formylglycinamide ribonucle...  93.7    6e-24 


>CDD:463904 pfam13507, GATase_5, CobB/CobQ-like glutamine amidotransferase 
domain.  This family captures members that are not found in 
pfam00310, pfam07685 and pfam13230.
Length=260

 Score = 421 bits (1085),  Expect = 2e-138, Method: Composition-based stats.
 Identities = 151/271 (56%), Positives = 181/271 (67%), Gaps = 16/271 (6%)

Query  1096  KPRVAILREQGVNSQAEMAFAFNVAGFSAIDVHMTDIISGRVSLSSFVGLAACGGFSYGD  1155
             KPRVAILRE G N + EMA AF  AGF A+DVHM+D++SGRVSL  F GLAA GGFSYGD
Sbjct  1     KPRVAILREPGTNGEYEMAAAFERAGFDAVDVHMSDLLSGRVSLDDFQGLAAPGGFSYGD  60

Query  1156  VLGAGQGWAKSVLLHENTRTEFQSFFQRPDTFALGVCNGCQFLSRLKELIPG-----ASN  1210
             VLG+G+GWA S+L +   R  F++FF RPDTF+LG+CNGCQ LS+L  LIPG     A  
Sbjct  61    VLGSGKGWAASILFNPKLRDAFEAFFNRPDTFSLGICNGCQLLSKLG-LIPGGEGDLAER  119

Query  1211  WPSFERNASEQYEGRVCMVRISDPDPANPSVFLHGMNGSSLPIAVAHGEGRASFAAAPGT  1270
             WP+  RN S ++E R   V+IS     +PSVFL GM+GS LP  VAHGEGR  F +    
Sbjct  120   WPTLTRNDSGRFESRWVNVKIS---EKSPSVFLRGMDGSGLP--VAHGEGRFVFRSE--E  172

Query  1271  SAQDFVHQGLAPVQYVDNATLKPTMKYPFNPNGSPEGIAGIRSADGRVLAIMPHPERTVM  1330
                     G   ++YVDNA   PT +YPFNPNGSP GIAGI S DGRVL +MPHPER   
Sbjct  173   VLARLEANGQVALRYVDNA-GNPTEEYPFNPNGSPLGIAGICSPDGRVLGLMPHPERVFR  231

Query  1331  GGIASWLPPNAEEWGDIGPWGRVFFSARRWV  1361
                    PP   EW ++ PW R+F +AR+WV
Sbjct  232   PWQWPHWPP--GEWEEVSPWLRLFRNARKWV  260


>CDD:465635 pfam18076, FGAR-AT_N, Formylglycinamide ribonucleotide amidotransferase 
N-terminal.  This is the N-terminal domain found 
in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT), 
also known as Phosphoribosylformylglycinamidine synthase 
(EC:6.3.5.3), PurL and formylglycinamidine ribonucleotide (FGAM) 
synthase. This enzyme catalyzes the ATP-dependent conversion 
of formylglycinamide ribonucleotide and glutamine to 
formylglycinamidine ribonucleotide, ADP, Pi, and glutamate in 
the fourth step of the purine biosynthetic pathway.
Length=115

 Score = 148 bits (376),  Expect = 4e-42, Method: Composition-based stats.
 Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 8/122 (7%)

Query  39   QWIHYVHAERPLDAQQQGVLEQLLRYGDITDVPASFGPEDGSFDVFYVFPRTGTISPWSS  98
            +++H+V  E PL A ++  LEQLL YG   + P   G      ++  V PR GTISPWSS
Sbjct  1    EYVHFVELEAPLSAAERARLEQLLTYGPPLEEPEPEG------ELLLVTPRLGTISPWSS  54

Query  99   QATGISHVCGLRQYVKRIERGIKISC-LREKTQEFKPGFEDVLHDRMTQLLSQTEPDLHL  157
            +AT I+H CGL   V+RIERGI      +  +         +LHDRMT+ +     D   
Sbjct  55   KATDIAHNCGLDA-VRRIERGIAYYLTGKPLSAAELAALAALLHDRMTESVLTDLEDAAA  113

Query  158  MF  159
            +F
Sbjct  114  LF  115


>CDD:460684 pfam02769, AIRS_C, AIR synthase related protein, C-terminal domain. 
 This family includes Hydrogen expression/formation protein 
HypE, AIR synthases EC:6.3.3.1, FGAM synthase EC:6.3.5.3 
and selenide, water dikinase EC:2.7.9.3. The function of 
the C-terminal domain of AIR synthase is unclear, but the cleft 
formed between N and C domains is postulated as a sulphate 
binding site.
Length=152

 Score = 112 bits (281),  Expect = 5e-29, Method: Composition-based stats.
 Identities = 46/149 (31%), Positives = 72/149 (48%), Gaps = 8/149 (5%)

Query  449  KPGSYLVVLGGPAMLIGLGGGAASSVASGEGSADLDFASVQRGNAEVQRRAQEVINACVA  508
            KPG  L++LG      GL G   S     +G  D   A+VQ G+  ++     V     A
Sbjct  1    KPGDVLILLGS----SGLHGAGLSLSR--KGLEDSGLAAVQLGDPLLEPTLIYVKLLLAA  54

Query  509  MGENNPIKFIHDVGAGGLSNALPELIHDSGLGATFELREVDSADKSMSPMQIWCCEAQER  568
            +G    +K +HD+  GGL+ AL E+   SG+GA  +L +V   ++ M P+++   E Q R
Sbjct  55   LG--GLVKAMHDITGGGLAGALAEMAPASGVGAEIDLDKVPIFEELMLPLEMLLSENQGR  112

Query  569  YVLAVGEEGMNKFTAIAHRERCGFSVVGR  597
             ++ V  E      AI  +E    +V+G 
Sbjct  113  GLVVVAPEEAEAVLAILEKEGLEAAVIGE  141


 Score = 66.6 bits (163),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 34/156 (22%), Positives = 48/156 (31%), Gaps = 17/156 (11%)

Query  866   VGDTVLMFVDLSFGRKTLGGSALAQVFNQVGDECPD--LRDVEIFRDFFDATQQL-QEAG  922
              GD +++           G                   L D  +          L    G
Sbjct  2     PGDVLILLGSSGLH----GAGLSLSRKGLEDSGLAAVQLGDPLLEPTLIYVKLLLAALGG  57

Query  923   IVLAYHDRSDGGLFTTLAEMMFAGRCGVEIMLDNI---CPTNSTQDLVSTLFTEELG-AV  978
             +V A HD + GGL   LAEM  A   G EI LD +          ++   L +E  G  +
Sbjct  58    LVKAMHDITGGGLAGALAEMAPASGVGAEIDLDKVPIFEELMLPLEM---LLSENQGRGL  114

Query  979   FQVRKEHEIQFRSCFATCGPPAGLIHKIGRVSERPK  1014
               V  E      +     G  A     IG V+   +
Sbjct  115   VVVAPEEAEAVLAILEKEGLEA---AVIGEVTAGGR  147


>CDD:465632 pfam18072, FGAR-AT_linker, Formylglycinamide ribonucleotide amidotransferase 
linker domain.  This is the linker domain found 
in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT), 
also known as Phosphoribosylformylglycinamidine synthase 
(EC:6.3.5.3), PurL and formylglycinamidine ribonucleotide 
(FGAM) synthase. This enzyme catalyzes the ATP-dependent 
conversion of formylglycinamide ribonucleotide (FGAR) and glutamine 
to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, 
and glutamate in the fourth step of the purine biosynthetic 
pathway. The structure analysis of Salmonella typhimurium 
FGAR-AT reveals that this linker domain is made up of a long 
hydrophilic belt with an extended conformation.
Length=50

 Score = 93.7 bits (234),  Expect = 6e-24, Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 39/53 (74%), Gaps = 3/53 (6%)

Query  183  LQEANKRLGLALEQSEIDYLADAYGPNGPLARDPTDVELFMFAQVNSEHCRHK  235
            L+EAN+ LGLAL   EIDYL + +     L R+PTDVEL MFAQ+ SEHCRHK
Sbjct  1    LEEANRYLGLALSDDEIDYLVEYFAG---LGRNPTDVELGMFAQMWSEHCRHK  50



Lambda      K        H        a         alpha
   0.318    0.134    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1740022400


Query= TCONS_00037553

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396385 pfam01793, Glyco_transf_15, Glycolipid 2-alpha-mannosy...  260     2e-88


>CDD:396385 pfam01793, Glyco_transf_15, Glycolipid 2-alpha-mannosyltransferase. 
 This is a family of alpha-1,2 mannosyl-transferases 
involved in N-linked and O-linked glycosylation of proteins. 
Some of the enzymes in this family have been shown to be involved 
in O- and N-linked glycan modifications in the Golgi.
Length=313

 Score = 260 bits (666),  Expect = 2e-88, Method: Composition-based stats.
 Identities = 96/183 (52%), Positives = 127/183 (69%), Gaps = 8/183 (4%)

Query  11   LTEQKIQYSDKLSYHQMCRWNSGMFYKHPALKNYKYYWRVEPKVQFFCNVDYDVFRFMED  70
            L +  I Y D  SY  MCR+ SG FYKHP L+ Y YYWR+EP ++F C+++YD+F++M+D
Sbjct  130  LADANIPYGDSESYRHMCRFYSGFFYKHPELQKYDYYWRIEPGIKFNCDINYDIFKYMQD  189

Query  71   RNLTYGFTINLFDDPKTVPTLWPETKKFLAANPSYLSSNNMMGWLTDDSLRPDHTEAANG  130
             N  YGFT++L++  +T+PTLW  T  F+  NP +++ NN   WL+DD          N 
Sbjct  190  NNKIYGFTLSLYEIEETIPTLWDSTLNFMKQNPEFIAKNNNRSWLSDDG--------GNT  241

Query  131  YSTCHFWSNFEIGDLDFFRGEQYDAYFNHLDRAGGFFYERWGDAPVHSIGLGLFADAAKV  190
            Y+TCHFWSNFEIGDLDFFR E Y+ YF +LD  GGFFYERWGDAPVHSI + LF     +
Sbjct  242  YNTCHFWSNFEIGDLDFFRSEAYEKYFEYLDSKGGFFYERWGDAPVHSIAVSLFLPKDDI  301

Query  191  HWY  193
            H++
Sbjct  302  HFF  304



Lambda      K        H        a         alpha
   0.324    0.138    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0868    0.140     1.90     42.6     43.6 

Effective search space used: 192752112


Query= TCONS_00037554

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396385 pfam01793, Glyco_transf_15, Glycolipid 2-alpha-mannosy...  279     5e-95


>CDD:396385 pfam01793, Glyco_transf_15, Glycolipid 2-alpha-mannosyltransferase. 
 This is a family of alpha-1,2 mannosyl-transferases 
involved in N-linked and O-linked glycosylation of proteins. 
Some of the enzymes in this family have been shown to be involved 
in O- and N-linked glycan modifications in the Golgi.
Length=313

 Score = 279 bits (715),  Expect = 5e-95, Method: Composition-based stats.
 Identities = 104/192 (54%), Positives = 134/192 (70%), Gaps = 8/192 (4%)

Query  11   LTEQKIQYSDKLSYHQMCRWNSGMFYKHPALKNYKYYWRVEPKVQFFCNVDYDVFRFMED  70
            L +  I Y D  SY  MCR+ SG FYKHP L+ Y YYWR+EP ++F C+++YD+F++M+D
Sbjct  130  LADANIPYGDSESYRHMCRFYSGFFYKHPELQKYDYYWRIEPGIKFNCDINYDIFKYMQD  189

Query  71   RNLTYGFTINLFDDPKTVPTLWPETKKFLAANPSYLSSNNMMGWLTDDSLRPDHTEAANG  130
             N  YGFT++L++  +T+PTLW  T  F+  NP +++ NN   WL+DD          N 
Sbjct  190  NNKIYGFTLSLYEIEETIPTLWDSTLNFMKQNPEFIAKNNNRSWLSDDG--------GNT  241

Query  131  YSTCHFWSNFEIGDLDFFRGEQYDAYFNHLDRAGGFFYERWGDAPVHSIGLGLFADAAKV  190
            Y+TCHFWSNFEIGDLDFFR E Y+ YF +LD  GGFFYERWGDAPVHSI + LF     +
Sbjct  242  YNTCHFWSNFEIGDLDFFRSEAYEKYFEYLDSKGGFFYERWGDAPVHSIAVSLFLPKDDI  301

Query  191  HWFRDIGYNHIP  202
            H+FRDIGY H P
Sbjct  302  HFFRDIGYYHDP  313



Lambda      K        H        a         alpha
   0.324    0.140    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 257839252


Query= TCONS_00037555

Length=50


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83773054


Query= TCONS_00037556

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460083 pfam01151, ELO, GNS1/SUR4 family. Members of this fami...  70.0    8e-16


>CDD:460083 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are 
involved in long chain fatty acid elongation systems that produce 
the 26-carbon precursors for ceramide and sphingolipid 
synthesis. Predicted to be integral membrane proteins, in 
eukaryotes they are probably located on the endoplasmic reticulum. 
Yeast ELO3 affects plasma membrane H+-ATPase activity, 
and may act on a glucose-signaling pathway that controls the 
expression of several genes that are transcriptionally regulated 
by glucose such as PMA1.
Length=242

 Score = 70.0 bits (172),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query  48   TPMSTFKETAIALVAYYIIIFGGRELMKNRPAFKLNTLFMIHNFYLTAISATLLALFIEQ  107
              +S+     + +V Y + +F G +LM+NR  F L  L +++N +L+  S       +  
Sbjct  1    PLLSSPDPVILIIVLYLLFVFLGPKLMRNRKPFDLRRLLIVYNLFLSLFSLYGFYGMLPA  60

Query  108  LLPTLYRHGLFFTICDHQGG-WTQPLIVLYY  137
            LL  LY  G F+++C      + Q L+  +Y
Sbjct  61   LLGWLY--GFFWSLCQPSESPFAQGLVGFWY  89



Lambda      K        H        a         alpha
   0.330    0.146    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00037559

Length=244
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460083 pfam01151, ELO, GNS1/SUR4 family. Members of this fami...  190     3e-61


>CDD:460083 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are 
involved in long chain fatty acid elongation systems that produce 
the 26-carbon precursors for ceramide and sphingolipid 
synthesis. Predicted to be integral membrane proteins, in 
eukaryotes they are probably located on the endoplasmic reticulum. 
Yeast ELO3 affects plasma membrane H+-ATPase activity, 
and may act on a glucose-signaling pathway that controls the 
expression of several genes that are transcriptionally regulated 
by glucose such as PMA1.
Length=242

 Score = 190 bits (486),  Expect = 3e-61, Method: Composition-based stats.
 Identities = 78/191 (41%), Positives = 110/191 (58%), Gaps = 8/191 (4%)

Query  48   TPMSTFKETAIALVAYYIIIFGGRELMKNRPAFKLNTLFMIHNFYLTAISATLLALFIEQ  107
              +S+     + +V Y + +F G +LM+NR  F L  L +++N +L+  S       +  
Sbjct  1    PLLSSPDPVILIIVLYLLFVFLGPKLMRNRKPFDLRRLLIVYNLFLSLFSLYGFYGMLPA  60

Query  108  LLPTLYRHGLFFTICDHQGG-WTQPLI-VLYYLNYLTKYLELLDTVFLFLKKKPLTFLHT  165
            LL  LY  G F+++C      + Q L+   YYL YL+K LELLDTVFL L+KK L+FLH 
Sbjct  61   LLGWLY--GFFWSLCQPSESPFAQGLVGFWYYLFYLSKILELLDTVFLVLRKKQLSFLHV  118

Query  166  YHHGATALLCYTQLIGLTA-VQWVVIDINLLVHVVMYWYYFQSARG---IRIWWKEWITR  221
            YHH    L  +      T  V W  I +N  VHV+MY+YYF +A G   +  WWK++IT+
Sbjct  119  YHHSTMLLYSWLGYKYGTGGVGWFFILLNSFVHVIMYFYYFLAALGNKKLPRWWKKYITQ  178

Query  222  LQIIQFVIDLG  232
            LQI+QFVI L 
Sbjct  179  LQILQFVIGLA  189



Lambda      K        H        a         alpha
   0.331    0.145    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 259471146


Query= TCONS_00037557

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460083 pfam01151, ELO, GNS1/SUR4 family. Members of this fami...  70.0    8e-16


>CDD:460083 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are 
involved in long chain fatty acid elongation systems that produce 
the 26-carbon precursors for ceramide and sphingolipid 
synthesis. Predicted to be integral membrane proteins, in 
eukaryotes they are probably located on the endoplasmic reticulum. 
Yeast ELO3 affects plasma membrane H+-ATPase activity, 
and may act on a glucose-signaling pathway that controls the 
expression of several genes that are transcriptionally regulated 
by glucose such as PMA1.
Length=242

 Score = 70.0 bits (172),  Expect = 8e-16, Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query  48   TPMSTFKETAIALVAYYIIIFGGRELMKNRPAFKLNTLFMIHNFYLTAISATLLALFIEQ  107
              +S+     + +V Y + +F G +LM+NR  F L  L +++N +L+  S       +  
Sbjct  1    PLLSSPDPVILIIVLYLLFVFLGPKLMRNRKPFDLRRLLIVYNLFLSLFSLYGFYGMLPA  60

Query  108  LLPTLYRHGLFFTICDHQGG-WTQPLIVLYY  137
            LL  LY  G F+++C      + Q L+  +Y
Sbjct  61   LLGWLY--GFFWSLCQPSESPFAQGLVGFWY  89



Lambda      K        H        a         alpha
   0.330    0.146    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00037558

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460083 pfam01151, ELO, GNS1/SUR4 family. Members of this fami...  237     4e-78


>CDD:460083 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are 
involved in long chain fatty acid elongation systems that produce 
the 26-carbon precursors for ceramide and sphingolipid 
synthesis. Predicted to be integral membrane proteins, in 
eukaryotes they are probably located on the endoplasmic reticulum. 
Yeast ELO3 affects plasma membrane H+-ATPase activity, 
and may act on a glucose-signaling pathway that controls the 
expression of several genes that are transcriptionally regulated 
by glucose such as PMA1.
Length=242

 Score = 237 bits (607),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 100/249 (40%), Positives = 138/249 (55%), Gaps = 16/249 (6%)

Query  48   TPMSTFKETAIALVAYYIIIFGGRELMKNRPAFKLNTLFMIHNFYLTAISATLLALFIEQ  107
              +S+     + +V Y + +F G +LM+NR  F L  L +++N +L+  S       +  
Sbjct  1    PLLSSPDPVILIIVLYLLFVFLGPKLMRNRKPFDLRRLLIVYNLFLSLFSLYGFYGMLPA  60

Query  108  LLPTLYRHGLFFTICDHQGG-WTQPLI-VLYYLNYLTKYLELLDTVFLFLKKKPLTFLHT  165
            LL  LY  G F+++C      + Q L+   YYL YL+K LELLDTVFL L+KK L+FLH 
Sbjct  61   LLGWLY--GFFWSLCQPSESPFAQGLVGFWYYLFYLSKILELLDTVFLVLRKKQLSFLHV  118

Query  166  YHHGATALLCYTQLIGLTA-VQWVVIDINLLVHVVMYWYYFQSARG---IRIWWKEWITR  221
            YHH    L  +      T  V W  I +N  VHV+MY+YYF +A G   +  WWK++IT+
Sbjct  119  YHHSTMLLYSWLGYKYGTGGVGWFFILLNSFVHVIMYFYYFLAALGNKKLPRWWKKYITQ  178

Query  222  LQIIQFVIDLGFVYFASYTYFSSTYFPWAPNMGKCAGEEFAAFSGIAIISSYLFLFISFY  281
            LQI+QFVI L    +A Y Y+   Y         C G  FAA  G+ +  SYLFLF +FY
Sbjct  179  LQILQFVIGLAHTVYALYQYYLGPY--------GCDGPRFAARLGLVMYLSYLFLFSNFY  230

Query  282  IATYKKTAK  290
            I +Y K  K
Sbjct  231  IKSYLKPKK  239



Lambda      K        H        a         alpha
   0.328    0.141    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 402682880


Query= TCONS_00037560

Length=514


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.122    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00037561

Length=514


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.122    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 640449918


Query= TCONS_00037562

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-t...  151     4e-44
CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide...  124     2e-35
CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit....  129     1e-33


>CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal 
domain.  This family now also contains the lysine 2-oxoglutarate 
reductases.
Length=213

 Score = 151 bits (385),  Expect = 4e-44, Method: Composition-based stats.
 Identities = 53/134 (40%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query  8    AEMKLFMEQARDVDIIITTALIPGKAAPKLITKEMIAAMKPGSVIVDLAAEAGGNCE---  64
            ++ +L  E  ++ D++I TALIPG  APKL+T+EM+ +MKPGSVIVD+A + GGN E   
Sbjct  81   SQAELIAEAVKEADLVIGTALIPGAKAPKLVTREMVKSMKPGSVIVDVAIDQGGNVETSR  140

Query  65   ATVPGQLVNY-NGVTVIGYTDFPSRLPTQASTLYSNNIAKFLLSMAPQEKSF-GIDLSDE  122
             T  G+ V   +GV   G  + P  +P  +S   +NN   +LL +A  +K      L DE
Sbjct  141  PTTHGEPVYVVDGVVHYGVANMPGAVPRTSSQALTNNTLPYLLLLA--DKGLKAALLEDE  198

Query  123  VVRGSIVTLNGAIL  136
             +R  + T +G I 
Sbjct  199  ALRAGLNTHDGKIT  212


>CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, 
mitoch.  PNTB_4TM is the region upstream of family 
PNTB, pfam02233, that carries four of this transporters transmembrane 
regions. PNTB is the beta-subunit of pyridine nucleotide 
transhydrogenase. This family forms part of the Proton-translocating 
Transhydrogenase (PTH) Family.
Length=84

 Score = 124 bits (314),  Expect = 2e-35, Method: Composition-based stats.
 Identities = 48/86 (56%), Positives = 63/86 (73%), Gaps = 2/86 (2%)

Query  199  MMTFGLAGLVGYRAVWGVAPALHSPLMSVTNAISGMVGIGGLFIMGGGYTPSTIPEALGA  258
            +  F LA  VGY  +W V PALH+PLMSVTNAISG++ +G L   GGG T  T+   LG 
Sbjct  1    LTVFVLALFVGYEVIWKVPPALHTPLMSVTNAISGIIIVGALLAAGGGDT--TLATVLGF  58

Query  259  VSVLLASMNVAGGFVITKRMLDMFKR  284
            ++V+LA++NV GGF++T RMLDMFK+
Sbjct  59   IAVVLATINVVGGFLVTDRMLDMFKK  84


>CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit.  This 
family corresponds to the beta subunit of NADP transhydrogenase 
in prokaryotes, and either the protein N- or C terminal 
in eukaryotes. The domain is often found in conjunction with 
pfam01262. Pyridine nucleotide transhydrogenase catalyzes the 
reduction of NAD+ to NADPH. A complete loss of activity occurs 
upon mutation of Gly314 in E. coli.
Length=454

 Score = 129 bits (328),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 54/128 (42%), Positives = 75/128 (59%), Gaps = 6/128 (5%)

Query  320  AGYLVSTLLCISSISGLASQQTARRGNILGILGVISGILASLAAVGFSPEVLAQF--GAM  377
            A YLV+ +L I  + GL+S +TARRGN+LG +G+   I+A+L     +  +       A+
Sbjct  1    AAYLVAAVLFILGLKGLSSPKTARRGNLLGAIGMALAIVATLLLGALADSLPYGLILIAI  60

Query  378  AGGGALVGALIGRRITPTSLPQTVAALHSVVGLAAVLTSIGSVMADIG---DISTLHMVT  434
            A GG  +G  I RR+  T++PQ VA  HS+ GLAAVL +I   +A       IS  H+V 
Sbjct  61   AIGGV-IGLYIARRVKMTAMPQLVALFHSLGGLAAVLVAIAEYLAPEAFGAGISAFHLVE  119

Query  435  AYLGVLIG  442
              LGVLIG
Sbjct  120  IVLGVLIG  127



Lambda      K        H        a         alpha
   0.319    0.135    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 550599736


Query= TCONS_00037563

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-t...  233     4e-76
CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide...  131     4e-38


>CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal 
domain.  This family now also contains the lysine 2-oxoglutarate 
reductases.
Length=213

 Score = 233 bits (598),  Expect = 4e-76, Method: Composition-based stats.
 Identities = 92/234 (39%), Positives = 127/234 (54%), Gaps = 36/234 (15%)

Query  36   AVLEASNHFGRFLTGQVTAAG--------KVLVIGAGVAGLSAIAAARRLGAIVRGFDTR  87
            AV E +N+  +F  G+ T AG        KVLVIG GVAGL+A A A+ LGAIV   D R
Sbjct  1    AVQEGANYLEKFFGGRGTLAGGVPGVAPAKVLVIGGGVAGLNAAATAKGLGAIVTILDVR  60

Query  88   SAAREQVQS-LGAEFIEVDIQEEGAGQGGYAKEMSKEFYDAEMKLFMEQARDVDIIITTA  146
             A  EQ++S LGA+F+E                       ++ +L  E  ++ D++I TA
Sbjct  61   PARLEQLESILGAKFVET--------------------LYSQAELIAEAVKEADLVIGTA  100

Query  147  LIPGKAAPKLITKEMIAAMKPGSVIVDLAAEAGGNCE---ATVPGQLVNY-NGVTVIGYT  202
            LIPG  APKL+T+EM+ +MKPGSVIVD+A + GGN E    T  G+ V   +GV   G  
Sbjct  101  LIPGAKAPKLVTREMVKSMKPGSVIVDVAIDQGGNVETSRPTTHGEPVYVVDGVVHYGVA  160

Query  203  DFPSRLPTQASTLYSNNIAKFLLSMAPQEKSF-GIDLSDEVVRGSIVTLNGAIL  255
            + P  +P  +S   +NN   +LL +A  +K      L DE +R  + T +G I 
Sbjct  161  NMPGAVPRTSSQALTNNTLPYLLLLA--DKGLKAALLEDEALRAGLNTHDGKIT  212


>CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, 
mitoch.  PNTB_4TM is the region upstream of family 
PNTB, pfam02233, that carries four of this transporters transmembrane 
regions. PNTB is the beta-subunit of pyridine nucleotide 
transhydrogenase. This family forms part of the Proton-translocating 
Transhydrogenase (PTH) Family.
Length=84

 Score = 131 bits (331),  Expect = 4e-38, Method: Composition-based stats.
 Identities = 48/86 (56%), Positives = 63/86 (73%), Gaps = 2/86 (2%)

Query  318  MMTFGLAGLVGYRAVWGVAPALHSPLMSVTNAISGMVGIGGLFIMGGGYTPSTIPEALGA  377
            +  F LA  VGY  +W V PALH+PLMSVTNAISG++ +G L   GGG T  T+   LG 
Sbjct  1    LTVFVLALFVGYEVIWKVPPALHTPLMSVTNAISGIIIVGALLAAGGGDT--TLATVLGF  58

Query  378  VSVLLASMNVAGGFVITKRMLDMFKR  403
            ++V+LA++NV GGF++T RMLDMFK+
Sbjct  59   IAVVLATINVVGGFLVTDRMLDMFKK  84



Lambda      K        H        a         alpha
   0.317    0.133    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00037564

Length=775
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit....  652     0.0  
CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-t...  153     7e-43
CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide...  126     3e-35


>CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit.  This 
family corresponds to the beta subunit of NADP transhydrogenase 
in prokaryotes, and either the protein N- or C terminal 
in eukaryotes. The domain is often found in conjunction with 
pfam01262. Pyridine nucleotide transhydrogenase catalyzes the 
reduction of NAD+ to NADPH. A complete loss of activity occurs 
upon mutation of Gly314 in E. coli.
Length=454

 Score = 652 bits (1684),  Expect = 0.0, Method: Composition-based stats.
 Identities = 246/460 (53%), Positives = 308/460 (67%), Gaps = 17/460 (4%)

Query  320  AGYLVSTLLCISSISGLASQQTARRGNILGILGVISGILASLAAVGFSPEVLAQF--GAM  377
            A YLV+ +L I  + GL+S +TARRGN+LG +G+   I+A+L     +  +       A+
Sbjct  1    AAYLVAAVLFILGLKGLSSPKTARRGNLLGAIGMALAIVATLLLGALADSLPYGLILIAI  60

Query  378  AGGGALVGALIGRRITPTSLPQTVAALHSVVGLAAVLTSIGSVMADIG---DISTLHMVT  434
            A GG  +G  I RR+  T++PQ VA  HS+ GLAAVL +I   +A       IS  H+V 
Sbjct  61   AIGGV-IGLYIARRVKMTAMPQLVALFHSLGGLAAVLVAIAEYLAPEAFGAGISAFHLVE  119

Query  435  AYLGVLIGGVTFTGSIVAFLKLAGRMSSKPTILPGRHVINSTLLGTNMATMGAFVSMGPA  494
              LGVLIG VTFTGS++AF KL G +SSKP  LPGRH++N  LL   +     FV+   +
Sbjct  120  IVLGVLIGAVTFTGSLIAFGKLQGLLSSKPLTLPGRHLLNLLLLLAIVVLGVLFVAAPSS  179

Query  495  SPLIAATCLGANTMLSFLKGYTTTAAIGGADMPVVITVLNAYSGFALVAEGFMLNNPLLT  554
              L   T       L+ L G      IGGADMPVVI++LN+YSG+A  A GF+L NPLL 
Sbjct  180  PGLWLLT------ALALLLGVLLVLPIGGADMPVVISLLNSYSGWAAAAAGFVLGNPLLI  233

Query  555  SVGSLIGVSGSILSYIMCVAMNRSLTNVLFGGI----AAPQQGQKKIEGQITQVTVDDTV  610
              G+L+G SG+IL+YIMC AMNRSLTNVLFGG     +A   G    +G++ +++ +D  
Sbjct  234  IAGALVGASGAILTYIMCKAMNRSLTNVLFGGFGAAASAGAAGAAAADGEVKEISAEDAA  293

Query  611  EILSNAESVIIVVGYGMAVAKAQYALAEIVRMLRAKGVKVRFAIHPVAGRMPGQCNVLLA  670
            E+L+ A SVIIV GYGMAVA+AQ+A+AE+  +L  +GV+VRFAIHPVAGRMPG  NVLLA
Sbjct  294  ELLAYASSVIIVPGYGMAVAQAQHAVAELADLLEERGVEVRFAIHPVAGRMPGHMNVLLA  353

Query  671  EASVPYDIVLEMDEINDDFPDTDVTLVIGANDTVNPIALE-PDSPISGMPVLHAWKSKEV  729
            EA VPYDIVLEMDEINDDF DTDV LVIGAND VNP A   P SPI GMP+L  WK+K V
Sbjct  354  EADVPYDIVLEMDEINDDFADTDVALVIGANDVVNPAARTDPGSPIYGMPILEVWKAKTV  413

Query  730  IVMKRGMSSGYADVPNPMFYMPGTRMLFGDAKASCDAIKA  769
            IV+KR M  GYA V NP+FY   TRMLFGDAK S + +  
Sbjct  414  IVIKRSMGPGYAGVDNPLFYKDNTRMLFGDAKKSLEELVK  453


>CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal 
domain.  This family now also contains the lysine 2-oxoglutarate 
reductases.
Length=213

 Score = 153 bits (388),  Expect = 7e-43, Method: Composition-based stats.
 Identities = 53/134 (40%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query  8    AEMKLFMEQARDVDIIITTALIPGKAAPKLITKEMIAAMKPGSVIVDLAAEAGGNCE---  64
            ++ +L  E  ++ D++I TALIPG  APKL+T+EM+ +MKPGSVIVD+A + GGN E   
Sbjct  81   SQAELIAEAVKEADLVIGTALIPGAKAPKLVTREMVKSMKPGSVIVDVAIDQGGNVETSR  140

Query  65   ATVPGQLVNY-NGVTVIGYTDFPSRLPTQASTLYSNNIAKFLLSMAPQEKSF-GIDLSDE  122
             T  G+ V   +GV   G  + P  +P  +S   +NN   +LL +A  +K      L DE
Sbjct  141  PTTHGEPVYVVDGVVHYGVANMPGAVPRTSSQALTNNTLPYLLLLA--DKGLKAALLEDE  198

Query  123  VVRGSIVTLNGAIL  136
             +R  + T +G I 
Sbjct  199  ALRAGLNTHDGKIT  212


>CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, 
mitoch.  PNTB_4TM is the region upstream of family 
PNTB, pfam02233, that carries four of this transporters transmembrane 
regions. PNTB is the beta-subunit of pyridine nucleotide 
transhydrogenase. This family forms part of the Proton-translocating 
Transhydrogenase (PTH) Family.
Length=84

 Score = 126 bits (319),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 48/86 (56%), Positives = 63/86 (73%), Gaps = 2/86 (2%)

Query  199  MMTFGLAGLVGYRAVWGVAPALHSPLMSVTNAISGMVGIGGLFIMGGGYTPSTIPEALGA  258
            +  F LA  VGY  +W V PALH+PLMSVTNAISG++ +G L   GGG T  T+   LG 
Sbjct  1    LTVFVLALFVGYEVIWKVPPALHTPLMSVTNAISGIIIVGALLAAGGGDT--TLATVLGF  58

Query  259  VSVLLASMNVAGGFVITKRMLDMFKR  284
            ++V+LA++NV GGF++T RMLDMFK+
Sbjct  59   IAVVLATINVVGGFLVTDRMLDMFKK  84



Lambda      K        H        a         alpha
   0.319    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 990958512


Query= TCONS_00043119

Length=775
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit....  652     0.0  
CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-t...  153     7e-43
CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide...  126     3e-35


>CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit.  This 
family corresponds to the beta subunit of NADP transhydrogenase 
in prokaryotes, and either the protein N- or C terminal 
in eukaryotes. The domain is often found in conjunction with 
pfam01262. Pyridine nucleotide transhydrogenase catalyzes the 
reduction of NAD+ to NADPH. A complete loss of activity occurs 
upon mutation of Gly314 in E. coli.
Length=454

 Score = 652 bits (1684),  Expect = 0.0, Method: Composition-based stats.
 Identities = 246/460 (53%), Positives = 308/460 (67%), Gaps = 17/460 (4%)

Query  320  AGYLVSTLLCISSISGLASQQTARRGNILGILGVISGILASLAAVGFSPEVLAQF--GAM  377
            A YLV+ +L I  + GL+S +TARRGN+LG +G+   I+A+L     +  +       A+
Sbjct  1    AAYLVAAVLFILGLKGLSSPKTARRGNLLGAIGMALAIVATLLLGALADSLPYGLILIAI  60

Query  378  AGGGALVGALIGRRITPTSLPQTVAALHSVVGLAAVLTSIGSVMADIG---DISTLHMVT  434
            A GG  +G  I RR+  T++PQ VA  HS+ GLAAVL +I   +A       IS  H+V 
Sbjct  61   AIGGV-IGLYIARRVKMTAMPQLVALFHSLGGLAAVLVAIAEYLAPEAFGAGISAFHLVE  119

Query  435  AYLGVLIGGVTFTGSIVAFLKLAGRMSSKPTILPGRHVINSTLLGTNMATMGAFVSMGPA  494
              LGVLIG VTFTGS++AF KL G +SSKP  LPGRH++N  LL   +     FV+   +
Sbjct  120  IVLGVLIGAVTFTGSLIAFGKLQGLLSSKPLTLPGRHLLNLLLLLAIVVLGVLFVAAPSS  179

Query  495  SPLIAATCLGANTMLSFLKGYTTTAAIGGADMPVVITVLNAYSGFALVAEGFMLNNPLLT  554
              L   T       L+ L G      IGGADMPVVI++LN+YSG+A  A GF+L NPLL 
Sbjct  180  PGLWLLT------ALALLLGVLLVLPIGGADMPVVISLLNSYSGWAAAAAGFVLGNPLLI  233

Query  555  SVGSLIGVSGSILSYIMCVAMNRSLTNVLFGGI----AAPQQGQKKIEGQITQVTVDDTV  610
              G+L+G SG+IL+YIMC AMNRSLTNVLFGG     +A   G    +G++ +++ +D  
Sbjct  234  IAGALVGASGAILTYIMCKAMNRSLTNVLFGGFGAAASAGAAGAAAADGEVKEISAEDAA  293

Query  611  EILSNAESVIIVVGYGMAVAKAQYALAEIVRMLRAKGVKVRFAIHPVAGRMPGQCNVLLA  670
            E+L+ A SVIIV GYGMAVA+AQ+A+AE+  +L  +GV+VRFAIHPVAGRMPG  NVLLA
Sbjct  294  ELLAYASSVIIVPGYGMAVAQAQHAVAELADLLEERGVEVRFAIHPVAGRMPGHMNVLLA  353

Query  671  EASVPYDIVLEMDEINDDFPDTDVTLVIGANDTVNPIALE-PDSPISGMPVLHAWKSKEV  729
            EA VPYDIVLEMDEINDDF DTDV LVIGAND VNP A   P SPI GMP+L  WK+K V
Sbjct  354  EADVPYDIVLEMDEINDDFADTDVALVIGANDVVNPAARTDPGSPIYGMPILEVWKAKTV  413

Query  730  IVMKRGMSSGYADVPNPMFYMPGTRMLFGDAKASCDAIKA  769
            IV+KR M  GYA V NP+FY   TRMLFGDAK S + +  
Sbjct  414  IVIKRSMGPGYAGVDNPLFYKDNTRMLFGDAKKSLEELVK  453


>CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal 
domain.  This family now also contains the lysine 2-oxoglutarate 
reductases.
Length=213

 Score = 153 bits (388),  Expect = 7e-43, Method: Composition-based stats.
 Identities = 53/134 (40%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query  8    AEMKLFMEQARDVDIIITTALIPGKAAPKLITKEMIAAMKPGSVIVDLAAEAGGNCE---  64
            ++ +L  E  ++ D++I TALIPG  APKL+T+EM+ +MKPGSVIVD+A + GGN E   
Sbjct  81   SQAELIAEAVKEADLVIGTALIPGAKAPKLVTREMVKSMKPGSVIVDVAIDQGGNVETSR  140

Query  65   ATVPGQLVNY-NGVTVIGYTDFPSRLPTQASTLYSNNIAKFLLSMAPQEKSF-GIDLSDE  122
             T  G+ V   +GV   G  + P  +P  +S   +NN   +LL +A  +K      L DE
Sbjct  141  PTTHGEPVYVVDGVVHYGVANMPGAVPRTSSQALTNNTLPYLLLLA--DKGLKAALLEDE  198

Query  123  VVRGSIVTLNGAIL  136
             +R  + T +G I 
Sbjct  199  ALRAGLNTHDGKIT  212


>CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, 
mitoch.  PNTB_4TM is the region upstream of family 
PNTB, pfam02233, that carries four of this transporters transmembrane 
regions. PNTB is the beta-subunit of pyridine nucleotide 
transhydrogenase. This family forms part of the Proton-translocating 
Transhydrogenase (PTH) Family.
Length=84

 Score = 126 bits (319),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 48/86 (56%), Positives = 63/86 (73%), Gaps = 2/86 (2%)

Query  199  MMTFGLAGLVGYRAVWGVAPALHSPLMSVTNAISGMVGIGGLFIMGGGYTPSTIPEALGA  258
            +  F LA  VGY  +W V PALH+PLMSVTNAISG++ +G L   GGG T  T+   LG 
Sbjct  1    LTVFVLALFVGYEVIWKVPPALHTPLMSVTNAISGIIIVGALLAAGGGDT--TLATVLGF  58

Query  259  VSVLLASMNVAGGFVITKRMLDMFKR  284
            ++V+LA++NV GGF++T RMLDMFK+
Sbjct  59   IAVVLATINVVGGFLVTDRMLDMFKK  84



Lambda      K        H        a         alpha
   0.319    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 990958512


Query= TCONS_00043120

Length=775
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit....  652     0.0  
CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-t...  153     7e-43
CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide...  126     3e-35


>CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit.  This 
family corresponds to the beta subunit of NADP transhydrogenase 
in prokaryotes, and either the protein N- or C terminal 
in eukaryotes. The domain is often found in conjunction with 
pfam01262. Pyridine nucleotide transhydrogenase catalyzes the 
reduction of NAD+ to NADPH. A complete loss of activity occurs 
upon mutation of Gly314 in E. coli.
Length=454

 Score = 652 bits (1684),  Expect = 0.0, Method: Composition-based stats.
 Identities = 246/460 (53%), Positives = 308/460 (67%), Gaps = 17/460 (4%)

Query  320  AGYLVSTLLCISSISGLASQQTARRGNILGILGVISGILASLAAVGFSPEVLAQF--GAM  377
            A YLV+ +L I  + GL+S +TARRGN+LG +G+   I+A+L     +  +       A+
Sbjct  1    AAYLVAAVLFILGLKGLSSPKTARRGNLLGAIGMALAIVATLLLGALADSLPYGLILIAI  60

Query  378  AGGGALVGALIGRRITPTSLPQTVAALHSVVGLAAVLTSIGSVMADIG---DISTLHMVT  434
            A GG  +G  I RR+  T++PQ VA  HS+ GLAAVL +I   +A       IS  H+V 
Sbjct  61   AIGGV-IGLYIARRVKMTAMPQLVALFHSLGGLAAVLVAIAEYLAPEAFGAGISAFHLVE  119

Query  435  AYLGVLIGGVTFTGSIVAFLKLAGRMSSKPTILPGRHVINSTLLGTNMATMGAFVSMGPA  494
              LGVLIG VTFTGS++AF KL G +SSKP  LPGRH++N  LL   +     FV+   +
Sbjct  120  IVLGVLIGAVTFTGSLIAFGKLQGLLSSKPLTLPGRHLLNLLLLLAIVVLGVLFVAAPSS  179

Query  495  SPLIAATCLGANTMLSFLKGYTTTAAIGGADMPVVITVLNAYSGFALVAEGFMLNNPLLT  554
              L   T       L+ L G      IGGADMPVVI++LN+YSG+A  A GF+L NPLL 
Sbjct  180  PGLWLLT------ALALLLGVLLVLPIGGADMPVVISLLNSYSGWAAAAAGFVLGNPLLI  233

Query  555  SVGSLIGVSGSILSYIMCVAMNRSLTNVLFGGI----AAPQQGQKKIEGQITQVTVDDTV  610
              G+L+G SG+IL+YIMC AMNRSLTNVLFGG     +A   G    +G++ +++ +D  
Sbjct  234  IAGALVGASGAILTYIMCKAMNRSLTNVLFGGFGAAASAGAAGAAAADGEVKEISAEDAA  293

Query  611  EILSNAESVIIVVGYGMAVAKAQYALAEIVRMLRAKGVKVRFAIHPVAGRMPGQCNVLLA  670
            E+L+ A SVIIV GYGMAVA+AQ+A+AE+  +L  +GV+VRFAIHPVAGRMPG  NVLLA
Sbjct  294  ELLAYASSVIIVPGYGMAVAQAQHAVAELADLLEERGVEVRFAIHPVAGRMPGHMNVLLA  353

Query  671  EASVPYDIVLEMDEINDDFPDTDVTLVIGANDTVNPIALE-PDSPISGMPVLHAWKSKEV  729
            EA VPYDIVLEMDEINDDF DTDV LVIGAND VNP A   P SPI GMP+L  WK+K V
Sbjct  354  EADVPYDIVLEMDEINDDFADTDVALVIGANDVVNPAARTDPGSPIYGMPILEVWKAKTV  413

Query  730  IVMKRGMSSGYADVPNPMFYMPGTRMLFGDAKASCDAIKA  769
            IV+KR M  GYA V NP+FY   TRMLFGDAK S + +  
Sbjct  414  IVIKRSMGPGYAGVDNPLFYKDNTRMLFGDAKKSLEELVK  453


>CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal 
domain.  This family now also contains the lysine 2-oxoglutarate 
reductases.
Length=213

 Score = 153 bits (388),  Expect = 7e-43, Method: Composition-based stats.
 Identities = 53/134 (40%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query  8    AEMKLFMEQARDVDIIITTALIPGKAAPKLITKEMIAAMKPGSVIVDLAAEAGGNCE---  64
            ++ +L  E  ++ D++I TALIPG  APKL+T+EM+ +MKPGSVIVD+A + GGN E   
Sbjct  81   SQAELIAEAVKEADLVIGTALIPGAKAPKLVTREMVKSMKPGSVIVDVAIDQGGNVETSR  140

Query  65   ATVPGQLVNY-NGVTVIGYTDFPSRLPTQASTLYSNNIAKFLLSMAPQEKSF-GIDLSDE  122
             T  G+ V   +GV   G  + P  +P  +S   +NN   +LL +A  +K      L DE
Sbjct  141  PTTHGEPVYVVDGVVHYGVANMPGAVPRTSSQALTNNTLPYLLLLA--DKGLKAALLEDE  198

Query  123  VVRGSIVTLNGAIL  136
             +R  + T +G I 
Sbjct  199  ALRAGLNTHDGKIT  212


>CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, 
mitoch.  PNTB_4TM is the region upstream of family 
PNTB, pfam02233, that carries four of this transporters transmembrane 
regions. PNTB is the beta-subunit of pyridine nucleotide 
transhydrogenase. This family forms part of the Proton-translocating 
Transhydrogenase (PTH) Family.
Length=84

 Score = 126 bits (319),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 48/86 (56%), Positives = 63/86 (73%), Gaps = 2/86 (2%)

Query  199  MMTFGLAGLVGYRAVWGVAPALHSPLMSVTNAISGMVGIGGLFIMGGGYTPSTIPEALGA  258
            +  F LA  VGY  +W V PALH+PLMSVTNAISG++ +G L   GGG T  T+   LG 
Sbjct  1    LTVFVLALFVGYEVIWKVPPALHTPLMSVTNAISGIIIVGALLAAGGGDT--TLATVLGF  58

Query  259  VSVLLASMNVAGGFVITKRMLDMFKR  284
            ++V+LA++NV GGF++T RMLDMFK+
Sbjct  59   IAVVLATINVVGGFLVTDRMLDMFKK  84



Lambda      K        H        a         alpha
   0.319    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 990958512


Query= TCONS_00043121

Length=674
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit....  428     3e-145
CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-t...  151     9e-43 
CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide...  124     2e-34 


>CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit.  This 
family corresponds to the beta subunit of NADP transhydrogenase 
in prokaryotes, and either the protein N- or C terminal 
in eukaryotes. The domain is often found in conjunction with 
pfam01262. Pyridine nucleotide transhydrogenase catalyzes the 
reduction of NAD+ to NADPH. A complete loss of activity occurs 
upon mutation of Gly314 in E. coli.
Length=454

 Score = 428 bits (1104),  Expect = 3e-145, Method: Composition-based stats.
 Identities = 167/347 (48%), Positives = 223/347 (64%), Gaps = 16/347 (5%)

Query  320  AGYLVSTLLCISSISGLASQQTARRGNILGILGVISGILASLAAVGFSPEVLAQF--GAM  377
            A YLV+ +L I  + GL+S +TARRGN+LG +G+   I+A+L     +  +       A+
Sbjct  1    AAYLVAAVLFILGLKGLSSPKTARRGNLLGAIGMALAIVATLLLGALADSLPYGLILIAI  60

Query  378  AGGGALVGALIGRRITPTSLPQTVAALHSVVGLAAVLTSIGSVMADIG---DISTLHMVT  434
            A GG  +G  I RR+  T++PQ VA  HS+ GLAAVL +I   +A       IS  H+V 
Sbjct  61   AIGGV-IGLYIARRVKMTAMPQLVALFHSLGGLAAVLVAIAEYLAPEAFGAGISAFHLVE  119

Query  435  AYLGVLIGGVTFTGSIVAFLKLAGRMSSKPTILPGRHVINSTLLGTNMATMGAFVSMGPA  494
              LGVLIG VTFTGS++AF KL G +SSKP  LPGRH++N  LL   +     FV+   +
Sbjct  120  IVLGVLIGAVTFTGSLIAFGKLQGLLSSKPLTLPGRHLLNLLLLLAIVVLGVLFVAAPSS  179

Query  495  SPLIAATCLGANTMLSFLKGYTTTAAIGGADMPVVITVLNAYSGFALVAEGFMLNNPLLT  554
              L   T       L+ L G      IGGADMPVVI++LN+YSG+A  A GF+L NPLL 
Sbjct  180  PGLWLLT------ALALLLGVLLVLPIGGADMPVVISLLNSYSGWAAAAAGFVLGNPLLI  233

Query  555  SVGSLIGVSGSILSYIMCVAMNRSLTNVLFGGI----AAPQQGQKKIEGQITQVTVDDTV  610
              G+L+G SG+IL+YIMC AMNRSLTNVLFGG     +A   G    +G++ +++ +D  
Sbjct  234  IAGALVGASGAILTYIMCKAMNRSLTNVLFGGFGAAASAGAAGAAAADGEVKEISAEDAA  293

Query  611  EILSNAESVIIVVGYGMAVAKAQYALAEIVRMLRAKGVKVRFAIHPV  657
            E+L+ A SVIIV GYGMAVA+AQ+A+AE+  +L  +GV+VRFAIHPV
Sbjct  294  ELLAYASSVIIVPGYGMAVAQAQHAVAELADLLEERGVEVRFAIHPV  340


>CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal 
domain.  This family now also contains the lysine 2-oxoglutarate 
reductases.
Length=213

 Score = 151 bits (385),  Expect = 9e-43, Method: Composition-based stats.
 Identities = 53/134 (40%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query  8    AEMKLFMEQARDVDIIITTALIPGKAAPKLITKEMIAAMKPGSVIVDLAAEAGGNCE---  64
            ++ +L  E  ++ D++I TALIPG  APKL+T+EM+ +MKPGSVIVD+A + GGN E   
Sbjct  81   SQAELIAEAVKEADLVIGTALIPGAKAPKLVTREMVKSMKPGSVIVDVAIDQGGNVETSR  140

Query  65   ATVPGQLVNY-NGVTVIGYTDFPSRLPTQASTLYSNNIAKFLLSMAPQEKSF-GIDLSDE  122
             T  G+ V   +GV   G  + P  +P  +S   +NN   +LL +A  +K      L DE
Sbjct  141  PTTHGEPVYVVDGVVHYGVANMPGAVPRTSSQALTNNTLPYLLLLA--DKGLKAALLEDE  198

Query  123  VVRGSIVTLNGAIL  136
             +R  + T +G I 
Sbjct  199  ALRAGLNTHDGKIT  212


>CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, 
mitoch.  PNTB_4TM is the region upstream of family 
PNTB, pfam02233, that carries four of this transporters transmembrane 
regions. PNTB is the beta-subunit of pyridine nucleotide 
transhydrogenase. This family forms part of the Proton-translocating 
Transhydrogenase (PTH) Family.
Length=84

 Score = 124 bits (313),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 48/86 (56%), Positives = 63/86 (73%), Gaps = 2/86 (2%)

Query  199  MMTFGLAGLVGYRAVWGVAPALHSPLMSVTNAISGMVGIGGLFIMGGGYTPSTIPEALGA  258
            +  F LA  VGY  +W V PALH+PLMSVTNAISG++ +G L   GGG T  T+   LG 
Sbjct  1    LTVFVLALFVGYEVIWKVPPALHTPLMSVTNAISGIIIVGALLAAGGGDT--TLATVLGF  58

Query  259  VSVLLASMNVAGGFVITKRMLDMFKR  284
            ++V+LA++NV GGF++T RMLDMFK+
Sbjct  59   IAVVLATINVVGGFLVTDRMLDMFKK  84



Lambda      K        H        a         alpha
   0.320    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 856852990


Query= TCONS_00043122

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461595 pfam05222, AlaDh_PNT_N, Alanine dehydrogenase/PNT, N-t...  182     6e-58
CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-t...  127     8e-36


>CDD:461595 pfam05222, AlaDh_PNT_N, Alanine dehydrogenase/PNT, N-terminal 
domain.  This family now also contains the lysine 2-oxoglutarate 
reductases.
Length=135

 Score = 182 bits (464),  Expect = 6e-58, Method: Composition-based stats.
 Identities = 78/141 (55%), Positives = 98/141 (70%), Gaps = 7/141 (5%)

Query  85   GVPSETWPNERRVALTPQNVTLLLKKGFSRVLVERGAGEQAQIHDQAYEQVGATLVDRA-  143
            GVP E  P ERRVALTP  V  L+K G   VLVE GAG  A   D+AYE  GA +VD A 
Sbjct  1    GVPKEIKPGERRVALTPAGVKKLVKLGH-EVLVESGAGLGAGFSDEAYEAAGAEIVDTAA  59

Query  144  VVWSESNIVLKVRSPRQEGPIDEVEALRQGSTLISFLYPAQNKLLVEAIASRGVTAFAMD  203
             VW+E++++LKV+ P+ E    E   LR+G TLI+FL+PA N  L+EA+A++GVTA A +
Sbjct  60   EVWAEADLILKVKEPQPE----EYALLREGQTLITFLHPAANPELLEALAAKGVTAIAYE  115

Query  204  MIPRISRAQTFDALSSMANIA  224
             +PR SR Q+ DALSSMANIA
Sbjct  116  TVPR-SRGQSLDALSSMANIA  135


>CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal 
domain.  This family now also contains the lysine 2-oxoglutarate 
reductases.
Length=213

 Score = 127 bits (322),  Expect = 8e-36, Method: Composition-based stats.
 Identities = 55/136 (40%), Positives = 74/136 (54%), Gaps = 31/136 (23%)

Query  228  AVLEASNHFGRFLTGQVTAAG--------KVLVIGAGVAGLSAIA-AVGLRCAIVRGFDT  278
            AV E +N+  +F  G+ T AG        KVLVIG GVAGL+A A A GL  AIV   D 
Sbjct  1    AVQEGANYLEKFFGGRGTLAGGVPGVAPAKVLVIGGGVAGLNAAATAKGLG-AIVTILDV  59

Query  279  RSAAREQVQS-LGAEFIEVDIQEEGAGQGGYAKEMSKEFYDAEMKLFMEQARDVDIIITT  337
            R A  EQ++S LGA+F+E                       ++ +L  E  ++ D++I T
Sbjct  60   RPARLEQLESILGAKFVET--------------------LYSQAELIAEAVKEADLVIGT  99

Query  338  ALIPGKAAPKLITKEV  353
            ALIPG  APKL+T+E+
Sbjct  100  ALIPGAKAPKLVTREM  115



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 416839700


Query= TCONS_00043123

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-t...  156     6e-47
CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide...  128     5e-38


>CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal 
domain.  This family now also contains the lysine 2-oxoglutarate 
reductases.
Length=213

 Score = 156 bits (396),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 53/134 (40%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query  8    AEMKLFMEQARDVDIIITTALIPGKAAPKLITKEMIAAMKPGSVIVDLAAEAGGNCE---  64
            ++ +L  E  ++ D++I TALIPG  APKL+T+EM+ +MKPGSVIVD+A + GGN E   
Sbjct  81   SQAELIAEAVKEADLVIGTALIPGAKAPKLVTREMVKSMKPGSVIVDVAIDQGGNVETSR  140

Query  65   ATVPGQLVNY-NGVTVIGYTDFPSRLPTQASTLYSNNIAKFLLSMAPQEKSF-GIDLSDE  122
             T  G+ V   +GV   G  + P  +P  +S   +NN   +LL +A  +K      L DE
Sbjct  141  PTTHGEPVYVVDGVVHYGVANMPGAVPRTSSQALTNNTLPYLLLLA--DKGLKAALLEDE  198

Query  123  VVRGSIVTLNGAIL  136
             +R  + T +G I 
Sbjct  199  ALRAGLNTHDGKIT  212


>CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, 
mitoch.  PNTB_4TM is the region upstream of family 
PNTB, pfam02233, that carries four of this transporters transmembrane 
regions. PNTB is the beta-subunit of pyridine nucleotide 
transhydrogenase. This family forms part of the Proton-translocating 
Transhydrogenase (PTH) Family.
Length=84

 Score = 128 bits (325),  Expect = 5e-38, Method: Composition-based stats.
 Identities = 48/86 (56%), Positives = 63/86 (73%), Gaps = 2/86 (2%)

Query  199  MMTFGLAGLVGYRAVWGVAPALHSPLMSVTNAISGMVGIGGLFIMGGGYTPSTIPEALGA  258
            +  F LA  VGY  +W V PALH+PLMSVTNAISG++ +G L   GGG T  T+   LG 
Sbjct  1    LTVFVLALFVGYEVIWKVPPALHTPLMSVTNAISGIIIVGALLAAGGGDT--TLATVLGF  58

Query  259  VSVLLASMNVAGGFVITKRMLDMFKR  284
            ++V+LA++NV GGF++T RMLDMFK+
Sbjct  59   IAVVLATINVVGGFLVTDRMLDMFKK  84



Lambda      K        H        a         alpha
   0.319    0.135    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 393245000


Query= TCONS_00043124

Length=248
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461595 pfam05222, AlaDh_PNT_N, Alanine dehydrogenase/PNT, N-t...  187     3e-61


>CDD:461595 pfam05222, AlaDh_PNT_N, Alanine dehydrogenase/PNT, N-terminal 
domain.  This family now also contains the lysine 2-oxoglutarate 
reductases.
Length=135

 Score = 187 bits (477),  Expect = 3e-61, Method: Composition-based stats.
 Identities = 78/141 (55%), Positives = 98/141 (70%), Gaps = 7/141 (5%)

Query  85   GVPSETWPNERRVALTPQNVTLLLKKGFSRVLVERGAGEQAQIHDQAYEQVGATLVDRA-  143
            GVP E  P ERRVALTP  V  L+K G   VLVE GAG  A   D+AYE  GA +VD A 
Sbjct  1    GVPKEIKPGERRVALTPAGVKKLVKLGH-EVLVESGAGLGAGFSDEAYEAAGAEIVDTAA  59

Query  144  VVWSESNIVLKVRSPRQEGPIDEVEALRQGSTLISFLYPAQNKLLVEAIASRGVTAFAMD  203
             VW+E++++LKV+ P+ E    E   LR+G TLI+FL+PA N  L+EA+A++GVTA A +
Sbjct  60   EVWAEADLILKVKEPQPE----EYALLREGQTLITFLHPAANPELLEALAAKGVTAIAYE  115

Query  204  MIPRISRAQTFDALSSMANIA  224
             +PR SR Q+ DALSSMANIA
Sbjct  116  TVPR-SRGQSLDALSSMANIA  135



Lambda      K        H        a         alpha
   0.318    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265998722


Query= TCONS_00037565

Length=623
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit....  360     3e-119
CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-t...  151     5e-43 
CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide...  123     2e-34 


>CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit.  This 
family corresponds to the beta subunit of NADP transhydrogenase 
in prokaryotes, and either the protein N- or C terminal 
in eukaryotes. The domain is often found in conjunction with 
pfam01262. Pyridine nucleotide transhydrogenase catalyzes the 
reduction of NAD+ to NADPH. A complete loss of activity occurs 
upon mutation of Gly314 in E. coli.
Length=454

 Score = 360 bits (927),  Expect = 3e-119, Method: Composition-based stats.
 Identities = 144/312 (46%), Positives = 193/312 (62%), Gaps = 16/312 (5%)

Query  320  AGYLVSTLLCISSISGLASQQTARRGNILGILGVISGILASLAAVGFSPEVLAQF--GAM  377
            A YLV+ +L I  + GL+S +TARRGN+LG +G+   I+A+L     +  +       A+
Sbjct  1    AAYLVAAVLFILGLKGLSSPKTARRGNLLGAIGMALAIVATLLLGALADSLPYGLILIAI  60

Query  378  AGGGALVGALIGRRITPTSLPQTVAALHSVVGLAAVLTSIGSVMADIG---DISTLHMVT  434
            A GG  +G  I RR+  T++PQ VA  HS+ GLAAVL +I   +A       IS  H+V 
Sbjct  61   AIGGV-IGLYIARRVKMTAMPQLVALFHSLGGLAAVLVAIAEYLAPEAFGAGISAFHLVE  119

Query  435  AYLGVLIGGVTFTGSIVAFLKLAGRMSSKPTILPGRHVINSTLLGTNMATMGAFVSMGPA  494
              LGVLIG VTFTGS++AF KL G +SSKP  LPGRH++N  LL   +     FV+   +
Sbjct  120  IVLGVLIGAVTFTGSLIAFGKLQGLLSSKPLTLPGRHLLNLLLLLAIVVLGVLFVAAPSS  179

Query  495  SPLIAATCLGANTMLSFLKGYTTTAAIGGADMPVVITVLNAYSGFALVAEGFMLNNPLLT  554
              L   T       L+ L G      IGGADMPVVI++LN+YSG+A  A GF+L NPLL 
Sbjct  180  PGLWLLT------ALALLLGVLLVLPIGGADMPVVISLLNSYSGWAAAAAGFVLGNPLLI  233

Query  555  SVGSLIGVSGSILSYIMCVAMNRSLTNVLFGGI----AAPQQGQKKIEGQITQVTVDDTV  610
              G+L+G SG+IL+YIMC AMNRSLTNVLFGG     +A   G    +G++ +++ +D  
Sbjct  234  IAGALVGASGAILTYIMCKAMNRSLTNVLFGGFGAAASAGAAGAAAADGEVKEISAEDAA  293

Query  611  EILSNAESVIIV  622
            E+L+ A SVIIV
Sbjct  294  ELLAYASSVIIV  305


>CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal 
domain.  This family now also contains the lysine 2-oxoglutarate 
reductases.
Length=213

 Score = 151 bits (385),  Expect = 5e-43, Method: Composition-based stats.
 Identities = 53/134 (40%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query  8    AEMKLFMEQARDVDIIITTALIPGKAAPKLITKEMIAAMKPGSVIVDLAAEAGGNCE---  64
            ++ +L  E  ++ D++I TALIPG  APKL+T+EM+ +MKPGSVIVD+A + GGN E   
Sbjct  81   SQAELIAEAVKEADLVIGTALIPGAKAPKLVTREMVKSMKPGSVIVDVAIDQGGNVETSR  140

Query  65   ATVPGQLVNY-NGVTVIGYTDFPSRLPTQASTLYSNNIAKFLLSMAPQEKSF-GIDLSDE  122
             T  G+ V   +GV   G  + P  +P  +S   +NN   +LL +A  +K      L DE
Sbjct  141  PTTHGEPVYVVDGVVHYGVANMPGAVPRTSSQALTNNTLPYLLLLA--DKGLKAALLEDE  198

Query  123  VVRGSIVTLNGAIL  136
             +R  + T +G I 
Sbjct  199  ALRAGLNTHDGKIT  212


>CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, 
mitoch.  PNTB_4TM is the region upstream of family 
PNTB, pfam02233, that carries four of this transporters transmembrane 
regions. PNTB is the beta-subunit of pyridine nucleotide 
transhydrogenase. This family forms part of the Proton-translocating 
Transhydrogenase (PTH) Family.
Length=84

 Score = 123 bits (311),  Expect = 2e-34, Method: Composition-based stats.
 Identities = 48/86 (56%), Positives = 63/86 (73%), Gaps = 2/86 (2%)

Query  199  MMTFGLAGLVGYRAVWGVAPALHSPLMSVTNAISGMVGIGGLFIMGGGYTPSTIPEALGA  258
            +  F LA  VGY  +W V PALH+PLMSVTNAISG++ +G L   GGG T  T+   LG 
Sbjct  1    LTVFVLALFVGYEVIWKVPPALHTPLMSVTNAISGIIIVGALLAAGGGDT--TLATVLGF  58

Query  259  VSVLLASMNVAGGFVITKRMLDMFKR  284
            ++V+LA++NV GGF++T RMLDMFK+
Sbjct  59   IAVVLATINVVGGFLVTDRMLDMFKK  84



Lambda      K        H        a         alpha
   0.319    0.135    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 793541268


Query= TCONS_00037566

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-t...  155     4e-47
CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide...  129     1e-38


>CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal 
domain.  This family now also contains the lysine 2-oxoglutarate 
reductases.
Length=213

 Score = 155 bits (395),  Expect = 4e-47, Method: Composition-based stats.
 Identities = 53/134 (40%), Positives = 78/134 (58%), Gaps = 7/134 (5%)

Query  8    AEMKLFMEQARDVDIIITTALIPGKAAPKLITKEMIAAMKPGSVIVDLAAEAGGNCE---  64
            ++ +L  E  ++ D++I TALIPG  APKL+T+EM+ +MKPGSVIVD+A + GGN E   
Sbjct  81   SQAELIAEAVKEADLVIGTALIPGAKAPKLVTREMVKSMKPGSVIVDVAIDQGGNVETSR  140

Query  65   ATVPGQLVNY-NGVTVIGYTDFPSRLPTQASTLYSNNIAKFLLSMAPQEKSF-GIDLSDE  122
             T  G+ V   +GV   G  + P  +P  +S   +NN   +LL +A  +K      L DE
Sbjct  141  PTTHGEPVYVVDGVVHYGVANMPGAVPRTSSQALTNNTLPYLLLLA--DKGLKAALLEDE  198

Query  123  VVRGSIVTLNGAIL  136
             +R  + T +G I 
Sbjct  199  ALRAGLNTHDGKIT  212


>CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, 
mitoch.  PNTB_4TM is the region upstream of family 
PNTB, pfam02233, that carries four of this transporters transmembrane 
regions. PNTB is the beta-subunit of pyridine nucleotide 
transhydrogenase. This family forms part of the Proton-translocating 
Transhydrogenase (PTH) Family.
Length=84

 Score = 129 bits (326),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 48/86 (56%), Positives = 63/86 (73%), Gaps = 2/86 (2%)

Query  199  MMTFGLAGLVGYRAVWGVAPALHSPLMSVTNAISGMVGIGGLFIMGGGYTPSTIPEALGA  258
            +  F LA  VGY  +W V PALH+PLMSVTNAISG++ +G L   GGG T  T+   LG 
Sbjct  1    LTVFVLALFVGYEVIWKVPPALHTPLMSVTNAISGIIIVGALLAAGGGDT--TLATVLGF  58

Query  259  VSVLLASMNVAGGFVITKRMLDMFKR  284
            ++V+LA++NV GGF++T RMLDMFK+
Sbjct  59   IAVVLATINVVGGFLVTDRMLDMFKK  84



Lambda      K        H        a         alpha
   0.318    0.133    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 341798272


Query= TCONS_00037567

Length=1086
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit....  669     0.0  
CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-t...  235     8e-72
CDD:461595 pfam05222, AlaDh_PNT_N, Alanine dehydrogenase/PNT, N-t...  183     2e-54
CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide...  131     1e-36


>CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit.  This 
family corresponds to the beta subunit of NADP transhydrogenase 
in prokaryotes, and either the protein N- or C terminal 
in eukaryotes. The domain is often found in conjunction with 
pfam01262. Pyridine nucleotide transhydrogenase catalyzes the 
reduction of NAD+ to NADPH. A complete loss of activity occurs 
upon mutation of Gly314 in E. coli.
Length=454

 Score = 669 bits (1730),  Expect = 0.0, Method: Composition-based stats.
 Identities = 246/460 (53%), Positives = 308/460 (67%), Gaps = 17/460 (4%)

Query  631   AGYLVSTLLCISSISGLASQQTARRGNILGILGVISGILASLAAVGFSPEVLAQF--GAM  688
             A YLV+ +L I  + GL+S +TARRGN+LG +G+   I+A+L     +  +       A+
Sbjct  1     AAYLVAAVLFILGLKGLSSPKTARRGNLLGAIGMALAIVATLLLGALADSLPYGLILIAI  60

Query  689   AGGGALVGALIGRRITPTSLPQTVAALHSVVGLAAVLTSIGSVMADIG---DISTLHMVT  745
             A GG  +G  I RR+  T++PQ VA  HS+ GLAAVL +I   +A       IS  H+V 
Sbjct  61    AIGGV-IGLYIARRVKMTAMPQLVALFHSLGGLAAVLVAIAEYLAPEAFGAGISAFHLVE  119

Query  746   AYLGVLIGGVTFTGSIVAFLKLAGRMSSKPTILPGRHVINSTLLGTNMATMGAFVSMGPA  805
               LGVLIG VTFTGS++AF KL G +SSKP  LPGRH++N  LL   +     FV+   +
Sbjct  120   IVLGVLIGAVTFTGSLIAFGKLQGLLSSKPLTLPGRHLLNLLLLLAIVVLGVLFVAAPSS  179

Query  806   SPLIAATCLGANTMLSFLKGYTTTAAIGGADMPVVITVLNAYSGFALVAEGFMLNNPLLT  865
               L   T       L+ L G      IGGADMPVVI++LN+YSG+A  A GF+L NPLL 
Sbjct  180   PGLWLLT------ALALLLGVLLVLPIGGADMPVVISLLNSYSGWAAAAAGFVLGNPLLI  233

Query  866   SVGSLIGVSGSILSYIMCVAMNRSLTNVLFGGI----AAPQQGQKKIEGQITQVTVDDTV  921
               G+L+G SG+IL+YIMC AMNRSLTNVLFGG     +A   G    +G++ +++ +D  
Sbjct  234   IAGALVGASGAILTYIMCKAMNRSLTNVLFGGFGAAASAGAAGAAAADGEVKEISAEDAA  293

Query  922   EILSNAESVIIVVGYGMAVAKAQYALAEIVRMLRAKGVKVRFAIHPVAGRMPGQCNVLLA  981
             E+L+ A SVIIV GYGMAVA+AQ+A+AE+  +L  +GV+VRFAIHPVAGRMPG  NVLLA
Sbjct  294   ELLAYASSVIIVPGYGMAVAQAQHAVAELADLLEERGVEVRFAIHPVAGRMPGHMNVLLA  353

Query  982   EASVPYDIVLEMDEINDDFPDTDVTLVIGANDTVNPIALE-PDSPISGMPVLHAWKSKEV  1040
             EA VPYDIVLEMDEINDDF DTDV LVIGAND VNP A   P SPI GMP+L  WK+K V
Sbjct  354   EADVPYDIVLEMDEINDDFADTDVALVIGANDVVNPAARTDPGSPIYGMPILEVWKAKTV  413

Query  1041  IVMKRGMSSGYADVPNPMFYMPGTRMLFGDAKASCDAIKA  1080
             IV+KR M  GYA V NP+FY   TRMLFGDAK S + +  
Sbjct  414   IVIKRSMGPGYAGVDNPLFYKDNTRMLFGDAKKSLEELVK  453


>CDD:426165 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal 
domain.  This family now also contains the lysine 2-oxoglutarate 
reductases.
Length=213

 Score = 235 bits (603),  Expect = 8e-72, Method: Composition-based stats.
 Identities = 92/234 (39%), Positives = 127/234 (54%), Gaps = 36/234 (15%)

Query  228  AVLEASNHFGRFLTGQVTAAG--------KVLVIGAGVAGLSAIAAARRLGAIVRGFDTR  279
            AV E +N+  +F  G+ T AG        KVLVIG GVAGL+A A A+ LGAIV   D R
Sbjct  1    AVQEGANYLEKFFGGRGTLAGGVPGVAPAKVLVIGGGVAGLNAAATAKGLGAIVTILDVR  60

Query  280  SAAREQVQS-LGAEFIEVDIQEEGAGQGGYAKEMSKEFYDAEMKLFMEQARDVDIIITTA  338
             A  EQ++S LGA+F+E                       ++ +L  E  ++ D++I TA
Sbjct  61   PARLEQLESILGAKFVET--------------------LYSQAELIAEAVKEADLVIGTA  100

Query  339  LIPGKAAPKLITKEMIAAMKPGSVIVDLAAEAGGNCE---ATVPGQLVNY-NGVTVIGYT  394
            LIPG  APKL+T+EM+ +MKPGSVIVD+A + GGN E    T  G+ V   +GV   G  
Sbjct  101  LIPGAKAPKLVTREMVKSMKPGSVIVDVAIDQGGNVETSRPTTHGEPVYVVDGVVHYGVA  160

Query  395  DFPSRLPTQASTLYSNNIAKFLLSMAPQEKSF-GIDLSDEVVRGSIVTLNGAIL  447
            + P  +P  +S   +NN   +LL +A  +K      L DE +R  + T +G I 
Sbjct  161  NMPGAVPRTSSQALTNNTLPYLLLLA--DKGLKAALLEDEALRAGLNTHDGKIT  212


>CDD:461595 pfam05222, AlaDh_PNT_N, Alanine dehydrogenase/PNT, N-terminal 
domain.  This family now also contains the lysine 2-oxoglutarate 
reductases.
Length=135

 Score = 183 bits (467),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 78/141 (55%), Positives = 98/141 (70%), Gaps = 7/141 (5%)

Query  85   GVPSETWPNERRVALTPQNVTLLLKKGFSRVLVERGAGEQAQIHDQAYEQVGATLVDRA-  143
            GVP E  P ERRVALTP  V  L+K G   VLVE GAG  A   D+AYE  GA +VD A 
Sbjct  1    GVPKEIKPGERRVALTPAGVKKLVKLGH-EVLVESGAGLGAGFSDEAYEAAGAEIVDTAA  59

Query  144  VVWSESNIVLKVRSPRQEGPIDEVEALRQGSTLISFLYPAQNKLLVEAIASRGVTAFAMD  203
             VW+E++++LKV+ P+ E    E   LR+G TLI+FL+PA N  L+EA+A++GVTA A +
Sbjct  60   EVWAEADLILKVKEPQPE----EYALLREGQTLITFLHPAANPELLEALAAKGVTAIAYE  115

Query  204  MIPRISRAQTFDALSSMANIA  224
             +PR SR Q+ DALSSMANIA
Sbjct  116  TVPR-SRGQSLDALSSMANIA  135


>CDD:463694 pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, 
mitoch.  PNTB_4TM is the region upstream of family 
PNTB, pfam02233, that carries four of this transporters transmembrane 
regions. PNTB is the beta-subunit of pyridine nucleotide 
transhydrogenase. This family forms part of the Proton-translocating 
Transhydrogenase (PTH) Family.
Length=84

 Score = 131 bits (331),  Expect = 1e-36, Method: Composition-based stats.
 Identities = 48/86 (56%), Positives = 63/86 (73%), Gaps = 2/86 (2%)

Query  510  MMTFGLAGLVGYRAVWGVAPALHSPLMSVTNAISGMVGIGGLFIMGGGYTPSTIPEALGA  569
            +  F LA  VGY  +W V PALH+PLMSVTNAISG++ +G L   GGG T  T+   LG 
Sbjct  1    LTVFVLALFVGYEVIWKVPPALHTPLMSVTNAISGIIIVGALLAAGGGDT--TLATVLGF  58

Query  570  VSVLLASMNVAGGFVITKRMLDMFKR  595
            ++V+LA++NV GGF++T RMLDMFK+
Sbjct  59   IAVVLATINVVGGFLVTDRMLDMFKK  84



Lambda      K        H        a         alpha
   0.319    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1380879382


Query= TCONS_00037568

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit....  641     0.0  


>CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit.  This 
family corresponds to the beta subunit of NADP transhydrogenase 
in prokaryotes, and either the protein N- or C terminal 
in eukaryotes. The domain is often found in conjunction with 
pfam01262. Pyridine nucleotide transhydrogenase catalyzes the 
reduction of NAD+ to NADPH. A complete loss of activity occurs 
upon mutation of Gly314 in E. coli.
Length=454

 Score = 641 bits (1657),  Expect = 0.0, Method: Composition-based stats.
 Identities = 245/460 (53%), Positives = 307/460 (67%), Gaps = 17/460 (4%)

Query  7    AGYLVSTLLCISSISGLASQQTARRGNILGILGVISGILASLAAVGFSPEVLAQF--GAM  64
            A YLV+ +L I  + GL+S +TARRGN+LG +G+   I+A+L     +  +       A+
Sbjct  1    AAYLVAAVLFILGLKGLSSPKTARRGNLLGAIGMALAIVATLLLGALADSLPYGLILIAI  60

Query  65   AGGGALVGALIGRRITPTSLPQTVAALHSVVGLAAVLTSIGSVMADIG---DISTLHMVT  121
            A GG  +G  I RR+  T++PQ VA  HS+ GLAAVL +I   +A       IS  H+V 
Sbjct  61   AIGGV-IGLYIARRVKMTAMPQLVALFHSLGGLAAVLVAIAEYLAPEAFGAGISAFHLVE  119

Query  122  AYLGVLIGGVTFTGSIVAFLKLAGRMSSKPTILPGRHVINSTLLGTNMATMGAFVSMGPA  181
              LGVLIG VTFTGS++AF KL G +SSKP  LPGRH++N  LL   +     FV+   +
Sbjct  120  IVLGVLIGAVTFTGSLIAFGKLQGLLSSKPLTLPGRHLLNLLLLLAIVVLGVLFVAAPSS  179

Query  182  SPLIAATCLGANTMLSFLKGYTTTAAIGGADMPVVITVLNAYSGFALVAEGFMLNNPLLT  241
              L   T       L+ L G      IGGADMPVVI++LN+YSG+A  A GF+L NPLL 
Sbjct  180  PGLWLLT------ALALLLGVLLVLPIGGADMPVVISLLNSYSGWAAAAAGFVLGNPLLI  233

Query  242  SVGSLIGVSGSILSYIMCVAMNRSLTNVLFGGI----AAPQQGQKKIEGQITQVTVDDTV  297
              G+L+G SG+IL+YIMC AMNRSLTNVLFGG     +A   G    +G++ +++ +D  
Sbjct  234  IAGALVGASGAILTYIMCKAMNRSLTNVLFGGFGAAASAGAAGAAAADGEVKEISAEDAA  293

Query  298  EILSNAESVIIVVGYGMAVAKAQYALAEIVRMLRAKGVKVRFAIHPVAGRMPGQCNVLLA  357
            E+L+ A SVIIV GYGMAVA+AQ+A+AE+  +L  +GV+VRFAIHPVAGRMPG  NVLLA
Sbjct  294  ELLAYASSVIIVPGYGMAVAQAQHAVAELADLLEERGVEVRFAIHPVAGRMPGHMNVLLA  353

Query  358  EASVPYDIVLEMDEINDDFPDTDVTLVIGANDTVNPIALE-PDSPISGMPVLHAWKSKEV  416
            EA VPYDIVLEMDEINDDF DTDV LVIGAND VNP A   P SPI GMP+L  WK+K V
Sbjct  354  EADVPYDIVLEMDEINDDFADTDVALVIGANDVVNPAARTDPGSPIYGMPILEVWKAKTV  413

Query  417  IVMKRGMSSGYGDVPNPMFYMPGTRMLFGDAKASCDGIKA  456
            IV+KR M  GY  V NP+FY   TRMLFGDAK S + +  
Sbjct  414  IVIKRSMGPGYAGVDNPLFYKDNTRMLFGDAKKSLEELVK  453



Lambda      K        H        a         alpha
   0.320    0.136    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 570537888


Query= TCONS_00043125

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit....  645     0.0  


>CDD:460502 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit.  This 
family corresponds to the beta subunit of NADP transhydrogenase 
in prokaryotes, and either the protein N- or C terminal 
in eukaryotes. The domain is often found in conjunction with 
pfam01262. Pyridine nucleotide transhydrogenase catalyzes the 
reduction of NAD+ to NADPH. A complete loss of activity occurs 
upon mutation of Gly314 in E. coli.
Length=454

 Score = 645 bits (1667),  Expect = 0.0, Method: Composition-based stats.
 Identities = 246/460 (53%), Positives = 308/460 (67%), Gaps = 17/460 (4%)

Query  7    AGYLVSTLLCISSISGLASQQTARRGNILGILGVISGILASLAAVGFSPEVLAQF--GAM  64
            A YLV+ +L I  + GL+S +TARRGN+LG +G+   I+A+L     +  +       A+
Sbjct  1    AAYLVAAVLFILGLKGLSSPKTARRGNLLGAIGMALAIVATLLLGALADSLPYGLILIAI  60

Query  65   AGGGALVGALIGRRITPTSLPQTVAALHSVVGLAAVLTSIGSVMADIG---DISTLHMVT  121
            A GG  +G  I RR+  T++PQ VA  HS+ GLAAVL +I   +A       IS  H+V 
Sbjct  61   AIGGV-IGLYIARRVKMTAMPQLVALFHSLGGLAAVLVAIAEYLAPEAFGAGISAFHLVE  119

Query  122  AYLGVLIGGVTFTGSIVAFLKLAGRMSSKPTILPGRHVINSTLLGTNMATMGAFVSMGPA  181
              LGVLIG VTFTGS++AF KL G +SSKP  LPGRH++N  LL   +     FV+   +
Sbjct  120  IVLGVLIGAVTFTGSLIAFGKLQGLLSSKPLTLPGRHLLNLLLLLAIVVLGVLFVAAPSS  179

Query  182  SPLIAATCLGANTMLSFLKGYTTTAAIGGADMPVVITVLNAYSGFALVAEGFMLNNPLLT  241
              L   T       L+ L G      IGGADMPVVI++LN+YSG+A  A GF+L NPLL 
Sbjct  180  PGLWLLT------ALALLLGVLLVLPIGGADMPVVISLLNSYSGWAAAAAGFVLGNPLLI  233

Query  242  SVGSLIGVSGSILSYIMCVAMNRSLTNVLFGGI----AAPQQGQKKIEGQITQVTVDDTV  297
              G+L+G SG+IL+YIMC AMNRSLTNVLFGG     +A   G    +G++ +++ +D  
Sbjct  234  IAGALVGASGAILTYIMCKAMNRSLTNVLFGGFGAAASAGAAGAAAADGEVKEISAEDAA  293

Query  298  EILSNAESVIIVVGYGMAVAKAQYALAEIVRMLRAKGVKVRFAIHPVAGRMPGQCNVLLA  357
            E+L+ A SVIIV GYGMAVA+AQ+A+AE+  +L  +GV+VRFAIHPVAGRMPG  NVLLA
Sbjct  294  ELLAYASSVIIVPGYGMAVAQAQHAVAELADLLEERGVEVRFAIHPVAGRMPGHMNVLLA  353

Query  358  EASVPYDIVLEMDEINDDFPDTDVTLVIGANDTVNPIALE-PDSPISGMPVLHAWKSKEV  416
            EA VPYDIVLEMDEINDDF DTDV LVIGAND VNP A   P SPI GMP+L  WK+K V
Sbjct  354  EADVPYDIVLEMDEINDDFADTDVALVIGANDVVNPAARTDPGSPIYGMPILEVWKAKTV  413

Query  417  IVMKRGMSSGYADVPNPMFYMPGTRMLFGDAKASCDAIKA  456
            IV+KR M  GYA V NP+FY   TRMLFGDAK S + +  
Sbjct  414  IVIKRSMGPGYAGVDNPLFYKDNTRMLFGDAKKSLEELVK  453



Lambda      K        H        a         alpha
   0.320    0.136    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 570537888


Query= TCONS_00037569

Length=64


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.137    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0772    0.140     1.90     42.6     43.6 

Effective search space used: 82245170


Query= TCONS_00043126

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              93.9    3e-22


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 93.9 bits (234),  Expect = 3e-22, Method: Composition-based stats.
 Identities = 80/278 (29%), Positives = 132/278 (47%), Gaps = 10/278 (4%)

Query  1    MVLLDFVLNIIWLPIGAHDTWGFRSAHEAFMSTYNGTGAPPAWNWCLSYLATAGILIGFD  60
            + LL  ++ II L +   D  GF      +  T+   G P  +   L  L +     GF+
Sbjct  150  LKLLLPLILIIILGLVTADGGGFNLLSGEW-HTFFPDGWPGVFAGFLGVLWS---FTGFE  205

Query  61   ASGHVAEETKNAAVTAARGIFWSTVASGVGGLATIILFLFCAPDADTLFSFGSPQPFVSL  120
            ++ +V+EE K   V   + IF   +  GV  +   I F    PD +   S G  Q    L
Sbjct  206  SAANVSEEVKKRNV--PKAIFIGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALL  263

Query  121  YAVVLGKGGHVFMNIICIVALWLNTAIAIVAASRLVFAVARDGVLPFSGWVSRVH-NGQP  179
            +  V GK G + + I+  ++L      AIV ASRL++A+ARDGVLPFS + ++V+  G P
Sbjct  264  FQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKFGSP  323

Query  180  RNAVVVVWTVAALVTCTLLPSSVAFTSLVSAAGVPSAAAYGLICLGRLLCTPKRFPKPKW  239
              A+++   ++ ++    L S  A+ +L+S +      +Y L  +G L+    R  +P  
Sbjct  324  IRAIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLI---LRKKRPDL  380

Query  240  SLGRLSKPFQFIGVFWNAWVVAILFSPYAFPVTGENLN  277
                   P    G+ ++ +++  LF P   P TG +LN
Sbjct  381  GRIPGRWPVAIFGILFSLFLIVALFFPPVGPATGSSLN  418



Lambda      K        H        a         alpha
   0.328    0.140    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 340820252


Query= TCONS_00043127

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              68.9    1e-13


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 68.9 bits (169),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 59/260 (23%), Positives = 104/260 (40%), Gaps = 19/260 (7%)

Query  27   FSTTFAALYFVGGVRVTFSTGIAAGGNLAYWTSYLVTMVFTFITAAVIAEVCSASPSAGS  86
             S     +  V G  +  +  +A+GG       ++  ++F+     V AE+ SA P +G 
Sbjct  4    LSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGG  63

Query  87   IYLWAAEAGGPRFGRLLGFTVAWWSTTAWTTFCASNTQAAVNYMLSELTVFNVDFPTDSG  146
            IY++   A    FG+ + F   W +  A+    AS+   A +Y+LS       D      
Sbjct  64   IYVYLENA----FGKFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPDLVPT--  114

Query  147  DVKFRAVQWICTEILLALAALINFLPPKYFRFVFYLSSTMVLLDFVLNIIWLPIGAHDTW  206
                  + +     +L + A+IN    +    +  +   + LL  ++ II L +   D  
Sbjct  115  ----TWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGG  170

Query  207  GFRSAHEAFMSTYNGTGAPPAWNWCLSYLATAGILIGFDASGHVAEETKNAAVTAARGIF  266
            GF      +  T+   G P  +   L  L +     GF+++ +V+EE K   V   + IF
Sbjct  171  GFNLLSGEW-HTFFPDGWPGVFAGFLGVLWS---FTGFESAANVSEEVKKRNV--PKAIF  224

Query  267  WSTVASGVGGLATIILFLFC  286
               +  GV  +   I F   
Sbjct  225  IGVIIVGVLYILVNIAFFGV  244



Lambda      K        H        a         alpha
   0.326    0.136    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 338573760


Query= TCONS_00043128

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              74.7    2e-15


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 74.7 bits (184),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 59/260 (23%), Positives = 104/260 (40%), Gaps = 19/260 (7%)

Query  57   FSTTFAALYFVGGVRVTFSTGIAAGGNLAYWTSYLVTMVFTFITAAVIAEVCSASPSAGS  116
             S     +  V G  +  +  +A+GG       ++  ++F+     V AE+ SA P +G 
Sbjct  4    LSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGG  63

Query  117  IYLWAAEAGGPRFGRLLGFTVAWWSTTAWTTFCASNTQAAVNYMLSELTVFNVDFPTDSG  176
            IY++   A    FG+ + F   W +  A+    AS+   A +Y+LS       D      
Sbjct  64   IYVYLENA----FGKFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPDLVPT--  114

Query  177  DVKFRAVQWICTEILLALAALINFLPPKYFRFVFYLSSTMVLLDFVLNIIWLPIGAHDTW  236
                  + +     +L + A+IN    +    +  +   + LL  ++ II L +   D  
Sbjct  115  ----TWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGG  170

Query  237  GFRSAHEAFMSTYNGTGAPPAWNWCLSYLATAGILIGFDASGHVAEETKNAAVTAARGIF  296
            GF      +  T+   G P  +   L  L +     GF+++ +V+EE K   V   + IF
Sbjct  171  GFNLLSGEW-HTFFPDGWPGVFAGFLGVLWS---FTGFESAANVSEEVKKRNV--PKAIF  224

Query  297  WSTVASGVGGLATIILFLFC  316
               +  GV  +   I F   
Sbjct  225  IGVIIVGVLYILVNIAFFGV  244



Lambda      K        H        a         alpha
   0.324    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00037570

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              152     3e-41
CDD:366028 pfam00324, AA_permease, Amino acid permease                70.4    2e-13


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 152 bits (385),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 199/446 (45%), Gaps = 23/446 (5%)

Query  57   FSTTFAALYFVGGVRVTFSTGIAAGGNLAYWTSYLVTMVFTFITAAVIAEVCSASPSAGS  116
             S     +  V G  +  +  +A+GG       ++  ++F+     V AE+ SA P +G 
Sbjct  4    LSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGG  63

Query  117  IYLWAAEAGGPRFGRLLGFTVAWWSTTAWTTFCASNTQAAVNYMLSELTVFNVDFPTDSG  176
            IY++   A    FG+ + F   W +  A+    AS+   A +Y+LS       D      
Sbjct  64   IYVYLENA----FGKFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPDLVPT--  114

Query  177  DVKFRAVQWICTEILLALAALINFLPPKYFRFVFYLSSTMVLLDFVLNIIWLPIGAHDTW  236
                  + +     +L + A+IN    +    +  +   + LL  ++ II L +   D  
Sbjct  115  ----TWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGG  170

Query  237  GFRSAHEAFMSTYNGTGAPPAWNWCLSYLATAGILIGFDASGHVAEETKNAAVTAARGIF  296
            GF      +  T+   G P  +   L  L +     GF+++ +V+EE K   V   + IF
Sbjct  171  GFNLLSGEW-HTFFPDGWPGVFAGFLGVLWS---FTGFESAANVSEEVKKRNV--PKAIF  224

Query  297  WSTVASGVGGLATIILFLFCAPDADTLFSFGSPQPFVSLYAVVLGKGGHVFMNIICIVAL  356
               +  GV  +   I F    PD +   S G  Q    L+  V GK G + + I+  ++L
Sbjct  225  IGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSL  284

Query  357  WLNTAIAIVAASRLVFAVARDGVLPFSGWVSRVH-NGQPRNAVVVVWTVAALVTCTLLPS  415
                  AIV ASRL++A+ARDGVLPFS + ++V+  G P  A+++   ++ ++    L S
Sbjct  285  LGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKFGSPIRAIILTAILSLILLLLFLLS  344

Query  416  SVAFTSLVSAAGVPSAAAYGLICLGRLLCTPKRFPKPKWSLGRLSKPFQFIGVFWNAWVV  475
              A+ +L+S +      +Y L  +G L+    R  +P         P    G+ ++ +++
Sbjct  345  PAAYNALLSLSAYGYLLSYLLPIIGLLI---LRKKRPDLGRIPGRWPVAIFGILFSLFLI  401

Query  476  AILFSPYAFPVTGENLNYAPIIMAGV  501
              LF P   P TG +LNYA I++   
Sbjct  402  VALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 70.4 bits (173),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 86/458 (19%), Positives = 163/458 (36%), Gaps = 45/458 (10%)

Query  75   STGIAAGGNLAYWTSYLVTMVFTFITAAVIAEVCSASPSAGSIYLWAAEAGGPRFGRLLG  134
             + +   G       YL++ V  F+    + E+ +  P +G  Y +A+   GP      G
Sbjct  20   GSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASRFLGPSL----G  75

Query  135  FTVAWWSTTAWTTFCASNTQAAVNYMLSELTVFNVDFPTDSGDVKFRAVQWICTEILLAL  194
            F   W    +W T  A    AA   +  +      D P            W+   + L L
Sbjct  76   FATGWNYWLSWITVLALELTAASILI--QFWELVPDIPY----------LWVWGAVFLVL  123

Query  195  AALINFLPPKYFRFVFYLSSTMVLLDFVLNIIWLPIGAHDTWGFRSAHEAFMS--TYNGT  252
              +IN +  K++    +  + + ++  +  II   +G     G      A       NG 
Sbjct  124  LTIINLVGVKWYGEAEFWFALIKIIAIIGFII---VGIILLSGGNPNDGAIFRYLGDNGG  180

Query  253  GAPPAWNWCLSYLATAGILI----GFDASGHVAEETKNAAVT---AARGIFWSTVASGVG  305
                   +   +++   I      G +  G  A E KN   +   A   + W      + 
Sbjct  181  KNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYIL  240

Query  306  GLATIILFLFCAPDADTLFSFG--SPQPFVSLYAVVLGKGGHVFMNIICIVALWLNTAIA  363
             L  I   L    +   L +    +  PFV  +  +   G    +N + + A  L+ A +
Sbjct  241  SLLAIG--LLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAA-LSAANS  297

Query  364  -IVAASRLVFAVARDGVLP-FSGWVSRVHNGQPRNA-VVVVWTVAALVTCTLLPSSVAFT  420
             + + SR+++++ARDG+ P F   V +   G P  A +V +      +    L  ++ F 
Sbjct  298  SLYSGSRMLYSLARDGLAPKFLKKVDK--RGVPLRAILVSMVISLLALLLASLNPAIVFN  355

Query  421  SLVSAAGVPSAAAYGLICLGRLLCTPKRFPKPKW--SLGRLSKPFQFIGVFWNAWVVAIL  478
             L++ +G+     +GLI L  L        + +    L   +       +   A ++ IL
Sbjct  356  FLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIIL  415

Query  479  -----FSPYAFPVTGENLNYAPIIMAGVTILALISYFV  511
                 ++    P   +N        A + +L  +   +
Sbjct  416  IIQFLYAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILI  453



Lambda      K        H        a         alpha
   0.324    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 690425736


Query= TCONS_00037571

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              74.7    2e-15


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 74.7 bits (184),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 59/260 (23%), Positives = 104/260 (40%), Gaps = 19/260 (7%)

Query  57   FSTTFAALYFVGGVRVTFSTGIAAGGNLAYWTSYLVTMVFTFITAAVIAEVCSASPSAGS  116
             S     +  V G  +  +  +A+GG       ++  ++F+     V AE+ SA P +G 
Sbjct  4    LSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGG  63

Query  117  IYLWAAEAGGPRFGRLLGFTVAWWSTTAWTTFCASNTQAAVNYMLSELTVFNVDFPTDSG  176
            IY++   A    FG+ + F   W +  A+    AS+   A +Y+LS       D      
Sbjct  64   IYVYLENA----FGKFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPDLVPT--  114

Query  177  DVKFRAVQWICTEILLALAALINFLPPKYFRFVFYLSSTMVLLDFVLNIIWLPIGAHDTW  236
                  + +     +L + A+IN    +    +  +   + LL  ++ II L +   D  
Sbjct  115  ----TWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGG  170

Query  237  GFRSAHEAFMSTYNGTGAPPAWNWCLSYLATAGILIGFDASGHVAEETKNAAVTAARGIF  296
            GF      +  T+   G P  +   L  L +     GF+++ +V+EE K   V   + IF
Sbjct  171  GFNLLSGEW-HTFFPDGWPGVFAGFLGVLWS---FTGFESAANVSEEVKKRNV--PKAIF  224

Query  297  WSTVASGVGGLATIILFLFC  316
               +  GV  +   I F   
Sbjct  225  IGVIIVGVLYILVNIAFFGV  244



Lambda      K        H        a         alpha
   0.324    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00037572

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              74.7    2e-15


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 74.7 bits (184),  Expect = 2e-15, Method: Composition-based stats.
 Identities = 59/260 (23%), Positives = 104/260 (40%), Gaps = 19/260 (7%)

Query  57   FSTTFAALYFVGGVRVTFSTGIAAGGNLAYWTSYLVTMVFTFITAAVIAEVCSASPSAGS  116
             S     +  V G  +  +  +A+GG       ++  ++F+     V AE+ SA P +G 
Sbjct  4    LSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGG  63

Query  117  IYLWAAEAGGPRFGRLLGFTVAWWSTTAWTTFCASNTQAAVNYMLSELTVFNVDFPTDSG  176
            IY++   A    FG+ + F   W +  A+    AS+   A +Y+LS       D      
Sbjct  64   IYVYLENA----FGKFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPDLVPT--  114

Query  177  DVKFRAVQWICTEILLALAALINFLPPKYFRFVFYLSSTMVLLDFVLNIIWLPIGAHDTW  236
                  + +     +L + A+IN    +    +  +   + LL  ++ II L +   D  
Sbjct  115  ----TWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGG  170

Query  237  GFRSAHEAFMSTYNGTGAPPAWNWCLSYLATAGILIGFDASGHVAEETKNAAVTAARGIF  296
            GF      +  T+   G P  +   L  L +     GF+++ +V+EE K   V   + IF
Sbjct  171  GFNLLSGEW-HTFFPDGWPGVFAGFLGVLWS---FTGFESAANVSEEVKKRNV--PKAIF  224

Query  297  WSTVASGVGGLATIILFLFC  316
               +  GV  +   I F   
Sbjct  225  IGVIIVGVLYILVNIAFFGV  244



Lambda      K        H        a         alpha
   0.324    0.135    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380635702


Query= TCONS_00043129

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              68.9    3e-14


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 68.9 bits (169),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 82/155 (53%), Gaps = 4/155 (3%)

Query  1    MNIICIVALWLNTAIAIVAASRLVFAVARDGVLPFSGWVSRVH-NGQPRNAVVVVWTVAA  59
            + I+  ++L      AIV ASRL++A+ARDGVLPFS + ++V+  G P  A+++   ++ 
Sbjct  276  VVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKFGSPIRAIILTAILSL  335

Query  60   LVTCTLLPSSVAFTSLVSAAGVPSAAAYGLICLGRLLCTPKRFPKPKWSLGRLSKPFQFI  119
            ++    L S  A+ +L+S +      +Y L  +G L+    R  +P         P    
Sbjct  336  ILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLI---LRKKRPDLGRIPGRWPVAIF  392

Query  120  GVFWNAWVVAILFSPYAFPVTGENLNYAPIIMAGV  154
            G+ ++ +++  LF P   P TG +LNYA I++   
Sbjct  393  GILFSLFLIVALFFPPVGPATGSSLNYAIILIVAF  427



Lambda      K        H        a         alpha
   0.325    0.136    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 207225080


Query= TCONS_00043130

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              146     2e-39
CDD:366028 pfam00324, AA_permease, Amino acid permease                70.0    3e-13


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 146 bits (371),  Expect = 2e-39, Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 199/446 (45%), Gaps = 23/446 (5%)

Query  57   FSTTFAALYFVGGVRVTFSTGIAAGGNLAYWTSYLVTMVFTFITAAVIAEVCSASPSAGS  116
             S     +  V G  +  +  +A+GG       ++  ++F+     V AE+ SA P +G 
Sbjct  4    LSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGG  63

Query  117  IYLWAAEAGGPRFGRLLGFTVAWWSTTAWTTFCASNTQAAVNYMLSELTVFNVDFPTDSG  176
            IY++   A    FG+ + F   W +  A+    AS+   A +Y+LS       D      
Sbjct  64   IYVYLENA----FGKFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPDLVPT--  114

Query  177  DVKFRAVQWICTEILLALAALINFLPPKYFRFVFYLSSTMVLLDFVLNIIWLPIGAHDTW  236
                  + +     +L + A+IN    +    +  +   + LL  ++ II L +   D  
Sbjct  115  ----TWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGG  170

Query  237  GFRSAHEAFMSTYNGTGAPPAWNWCLSYLATAGILIGFDASGHVAEETKNAAVTAARGIF  296
            GF      +  T+   G P  +   L  L +     GF+++ +V+EE K   V   + IF
Sbjct  171  GFNLLSGEW-HTFFPDGWPGVFAGFLGVLWS---FTGFESAANVSEEVKKRNV--PKAIF  224

Query  297  WSTVASGVGGLATIILFLFCAPDADTLFSFGSPQPFVSLYAVVLGKGGHVFMNIICIVAL  356
               +  GV  +   I F    PD +   S G  Q    L+  V GK G + + I+  ++L
Sbjct  225  IGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSL  284

Query  357  WLVTAIAIVAASRLVFAVARDGVLPFSGWVSRVH-NGQPRNAVVVVWTVAALVTCTLLPS  415
                  AIV ASRL++A+ARDGVLPFS + ++V+  G P  A+++   ++ ++    L S
Sbjct  285  LGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKFGSPIRAIILTAILSLILLLLFLLS  344

Query  416  SVAFTSLVSAAGVPSAAAYGLICLGRLLCTPKRFPKPKWSLGRLSKPFQFIGVFWNAWVV  475
              A+ +L+S +      +Y L  +G L+    R  +P         P    G+ ++ +++
Sbjct  345  PAAYNALLSLSAYGYLLSYLLPIIGLLI---LRKKRPDLGRIPGRWPVAIFGILFSLFLI  401

Query  476  AILFSPYAFPVTGENLNYAPIIMAGV  501
              LF P   P TG +LNYA I++   
Sbjct  402  VALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 70.0 bits (172),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 84/457 (18%), Positives = 160/457 (35%), Gaps = 43/457 (9%)

Query  75   STGIAAGGNLAYWTSYLVTMVFTFITAAVIAEVCSASPSAGSIYLWAAEAGGPRFGRLLG  134
             + +   G       YL++ V  F+    + E+ +  P +G  Y +A+   GP      G
Sbjct  20   GSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASRFLGPSL----G  75

Query  135  FTVAWWSTTAWTTFCASNTQAAVNYMLSELTVFNVDFPTDSGDVKFRAVQWICTEILLAL  194
            F   W    +W T  A    AA   +  +      D P            W+   + L L
Sbjct  76   FATGWNYWLSWITVLALELTAASILI--QFWELVPDIPY----------LWVWGAVFLVL  123

Query  195  AALINFLPPKYFRFVFYLSSTMVLLDFVLNIIWLPIGAHDTWGFRSAHEAFMS--TYNGT  252
              +IN +  K++    +  + + ++  +  II   +G     G      A       NG 
Sbjct  124  LTIINLVGVKWYGEAEFWFALIKIIAIIGFII---VGIILLSGGNPNDGAIFRYLGDNGG  180

Query  253  GAPPAWNWCLSYLATAGILI----GFDASGHVAEETKNAAVT---AARGIFWSTVASGVG  305
                   +   +++   I      G +  G  A E KN   +   A   + W      + 
Sbjct  181  KNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYIL  240

Query  306  GLATIILFLFCAPDADTLFSFG--SPQPFVSLYAVVLGKGGHVFMNIICIVALWLVTAIA  363
             L  I   L    +   L +    +  PFV  +  +   G    +N + + A       +
Sbjct  241  SLLAIG--LLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSS  298

Query  364  IVAASRLVFAVARDGVLP-FSGWVSRVHNGQPRNA-VVVVWTVAALVTCTLLPSSVAFTS  421
            + + SR+++++ARDG+ P F   V +   G P  A +V +      +    L  ++ F  
Sbjct  299  LYSGSRMLYSLARDGLAPKFLKKVDK--RGVPLRAILVSMVISLLALLLASLNPAIVFNF  356

Query  422  LVSAAGVPSAAAYGLICLGRLLCTPKRFPKPKW--SLGRLSKPFQFIGVFWNAWVVAIL-  478
            L++ +G+     +GLI L  L        + +    L   +       +   A ++ IL 
Sbjct  357  LLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAIIIILI  416

Query  479  ----FSPYAFPVTGENLNYAPIIMAGVTILALISYFV  511
                ++    P   +N        A + +L  +   +
Sbjct  417  IQFLYAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILI  453



Lambda      K        H        a         alpha
   0.325    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00037573

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              142     8e-38
CDD:366028 pfam00324, AA_permease, Amino acid permease                63.5    4e-11


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 142 bits (361),  Expect = 8e-38, Method: Composition-based stats.
 Identities = 117/465 (25%), Positives = 201/465 (43%), Gaps = 42/465 (9%)

Query  57   FSTTFAALYFVGGVRVTFSTGIAAGGNLAYWTSYLVTMVFTFITAAVIAEVCSASPSAGS  116
             S     +  V G  +  +  +A+GG       ++  ++F+     V AE+ SA P +G 
Sbjct  4    LSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGG  63

Query  117  IYLWAAEAGGPRFGRLLGFTVAWWSTTAWTTFCASNTQAAVNYMLSELTVFNVDFPTDSG  176
            IY++   A    FG+ + F   W +  A+    AS+   A +Y+LS       D      
Sbjct  64   IYVYLENA----FGKFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPDLVPT--  114

Query  177  DVKFRAVQWICTEILLALAALINFLPPKYFRFVFYLSSTMVLLDFVLNIIWLPIGAHDTW  236
                  + +     +L + A+IN    +    +  +   + LL  ++ II L +   D  
Sbjct  115  ----TWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGG  170

Query  237  GFRSAHEAFMSTYNGTGAPPAWNWCLSYLATAGILIGFDASGHVAEETKNAAVTAARGIF  296
            GF      +  T+   G P  +   L  L +     GF+++ +V+EE K   V   + IF
Sbjct  171  GFNLLSGEW-HTFFPDGWPGVFAGFLGVLWS---FTGFESAANVSEEVKKRNV--PKAIF  224

Query  297  WSTVASGVGGLATIILFLFCAPDADTLFSFGSPQPFVSLYAVVLGKGGHVFMNIICIVAL  356
               +  GV  +   I F    PD +   S G  Q    L+  V GK G + + I+  ++L
Sbjct  225  IGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSL  284

Query  357  WLVSRLSLTIPPPKHILTPPQNTAIAIVAASRLVFAVARDGVLPFSGWVSRVH-NGQPRN  415
                           + T       AIV ASRL++A+ARDGVLPFS + ++V+  G P  
Sbjct  285  LG------------AVNT-------AIVGASRLLYALARDGVLPFSRFFAKVNKFGSPIR  325

Query  416  AVVVVWTVAALVTCTLLPSSVAFTSLVSAAGVPSAAAYGLICLGRLLCTPKRFPKPKWSL  475
            A+++   ++ ++    L S  A+ +L+S +      +Y L  +G L+    R  +P    
Sbjct  326  AIILTAILSLILLLLFLLSPAAYNALLSLSAYGYLLSYLLPIIGLLI---LRKKRPDLGR  382

Query  476  GRLSKPFQFIGVFWNAWVVAILFSPYAFPVTGENLNYAPIIMAGV  520
                 P    G+ ++ +++  LF P   P TG +LNYA I++   
Sbjct  383  IPGRWPVAIFGILFSLFLIVALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 63.5 bits (155),  Expect = 4e-11, Method: Composition-based stats.
 Identities = 86/476 (18%), Positives = 161/476 (34%), Gaps = 62/476 (13%)

Query  75   STGIAAGGNLAYWTSYLVTMVFTFITAAVIAEVCSASPSAGSIYLWAAEAGGPRFGRLLG  134
             + +   G       YL++ V  F+    + E+ +  P +G  Y +A+   GP      G
Sbjct  20   GSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASRFLGPSL----G  75

Query  135  FTVAWWSTTAWTTFCASNTQAAVNYMLSELTVFNVDFPTDSGDVKFRAVQWICTEILLAL  194
            F   W    +W T  A    AA   +  +      D P            W+   + L L
Sbjct  76   FATGWNYWLSWITVLALELTAASILI--QFWELVPDIPY----------LWVWGAVFLVL  123

Query  195  AALINFLPPKYFRFVFYLSSTMVLLDFVLNIIWLPIGAHDTWGFRSAHEAFMS--TYNGT  252
              +IN +  K++    +  + + ++  +  II   +G     G      A       NG 
Sbjct  124  LTIINLVGVKWYGEAEFWFALIKIIAIIGFII---VGIILLSGGNPNDGAIFRYLGDNGG  180

Query  253  GAPPAWNWCLSYLATAGILI----GFDASGHVAEETKNAAVT---AARGIFWSTVASGVG  305
                   +   +++   I      G +  G  A E KN   +   A   + W      + 
Sbjct  181  KNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYIL  240

Query  306  GLATIILFLFCAPDADTLFSFG--SPQPFVSLYAVVLGKGGHVFMNIICIVALWLVSRLS  363
             L  I   L    +   L +    +  PFV  +  +   G    +N + + A    +  S
Sbjct  241  SLLAIG--LLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAALSAANSS  298

Query  364  LTIPPPKHILTPPQNTAIAIVAASRLVFAVARDGVLP-FSGWVSRVHNGQPRNA-VVVVW  421
            L                    + SR+++++ARDG+ P F   V +   G P  A +V + 
Sbjct  299  L-------------------YSGSRMLYSLARDGLAPKFLKKVDK--RGVPLRAILVSMV  337

Query  422  TVAALVTCTLLPSSVAFTSLVSAAGVPSAAAYGLICLGRLLCTPKRFPKPKW--SLGRLS  479
                 +    L  ++ F  L++ +G+     +GLI L  L        + +    L   +
Sbjct  338  ISLLALLLASLNPAIVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKA  397

Query  480  KPFQFIGVFWNAWVVAIL-----FSPYAFPVTGENLNYAPIIMAGVTILALISYFV  530
                   +   A ++ IL     ++    P   +N        A + +L  +   +
Sbjct  398  PLGPLGVILGLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFAAAYLIVLLFLIILI  453



Lambda      K        H        a         alpha
   0.324    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 718819868


Query= TCONS_00043131

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              144     1e-38
CDD:366028 pfam00324, AA_permease, Amino acid permease                67.3    2e-12


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 144 bits (365),  Expect = 1e-38, Method: Composition-based stats.
 Identities = 114/446 (26%), Positives = 197/446 (44%), Gaps = 23/446 (5%)

Query  57   FSTTFAALYFVGGVRVTFSTGIAAGGNLAYWTSYLVTMVFTFITAAVIAEVCSASPSAGS  116
             S     +  V G  +  +  +A+GG       ++  ++F+     V AE+ SA P +G 
Sbjct  4    LSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGG  63

Query  117  IYLWAAEAGGPRFGRLLGFTVAWWSTTAWTTFCASNTQAAVNYMLSELTVFNVDFPTDSG  176
            IY++   A    FG+ + F   W +  A+    AS+   A +Y+LS       D      
Sbjct  64   IYVYLENA----FGKFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPDLVPT--  114

Query  177  DVKFRAVQWICTEILLALAALINFLPPKYFRFVFYLSSTMVLLDFVLNIIWLPIGAHDTW  236
                  + +     +L + A+IN    +    +  +   + LL  ++ II L +   D  
Sbjct  115  ----TWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGG  170

Query  237  GFRSAHEAFMSTYNGTGAPPAWNWCLSYLATAGILIGFDASGHVAEETKNAAVTAARGIF  296
            GF      +  T+   G P  +   L  L +     GF+++ +V+EE K   V   + IF
Sbjct  171  GFNLLSGEW-HTFFPDGWPGVFAGFLGVLWS---FTGFESAANVSEEVKKRNV--PKAIF  224

Query  297  WSTVASGVGGLATIILFLFCAPDADTLFSFGSPQPFVSLYAVVLGKGGHVFMNIICIVAL  356
               +  GV  +   I F    PD +   S G  Q    L+  V GK G + + I+  ++L
Sbjct  225  IGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSL  284

Query  357  WLNTAIAIVAASRLVFAVARDGVLPFSGWVSRVH-NGQPRNAVVVVWTVAALVTCTLLPS  415
                  AIV ASRL++A+ARDGVLPFS + ++V+  G P  A+++   ++ ++    L S
Sbjct  285  LGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKFGSPIRAIILTAILSLILLLLFLLS  344

Query  416  SVAFTSLVSAAGVPSAAAYGLICLGRLLCTPKRFPKPKWSLGRLSKPFQFIGVFWNAWVV  475
              A+ +L+S +      +Y L  +G L+    R  +P         P    G+ ++ +++
Sbjct  345  PAAYNALLSLSAYGYLLSYLLPIIGLLI---LRKKRPDLGRIPGRWPVAIFGILFSLFLI  401

Query  476  AILFSPYAFPVTGENLNCKPIIMAGV  501
              LF P   P TG +LN   I++   
Sbjct  402  VALFFPPVGPATGSSLNYAIILIVAF  427


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 67.3 bits (165),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 82/420 (20%), Positives = 149/420 (35%), Gaps = 44/420 (10%)

Query  75   STGIAAGGNLAYWTSYLVTMVFTFITAAVIAEVCSASPSAGSIYLWAAEAGGPRFGRLLG  134
             + +   G       YL++ V  F+    + E+ +  P +G  Y +A+   GP      G
Sbjct  20   GSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASRFLGPSL----G  75

Query  135  FTVAWWSTTAWTTFCASNTQAAVNYMLSELTVFNVDFPTDSGDVKFRAVQWICTEILLAL  194
            F   W    +W T  A    AA   +  +      D P            W+   + L L
Sbjct  76   FATGWNYWLSWITVLALELTAASILI--QFWELVPDIPY----------LWVWGAVFLVL  123

Query  195  AALINFLPPKYFRFVFYLSSTMVLLDFVLNIIWLPIGAHDTWGFRSAHEAFMS--TYNGT  252
              +IN +  K++    +  + + ++  +  II   +G     G      A       NG 
Sbjct  124  LTIINLVGVKWYGEAEFWFALIKIIAIIGFII---VGIILLSGGNPNDGAIFRYLGDNGG  180

Query  253  GAPPAWNWCLSYLATAGILI----GFDASGHVAEETKNAAVT---AARGIFWSTVASGVG  305
                   +   +++   I      G +  G  A E KN   +   A   + W      + 
Sbjct  181  KNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYIL  240

Query  306  GLATIILFLFCAPDADTLFSFG--SPQPFVSLYAVVLGKGGHVFMNIICIVALWLNTAIA  363
             L  I   L    +   L +    +  PFV  +  +   G    +N + + A  L+ A +
Sbjct  241  SLLAIG--LLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAA-LSAANS  297

Query  364  -IVAASRLVFAVARDGVLP-FSGWVSRVHNGQPRNAVVVVWTVAALVTCTLLPSSVAFTS  421
             + + SR+++++ARDG+ P F   V +   G P         V+ +++   L  +    +
Sbjct  298  SLYSGSRMLYSLARDGLAPKFLKKVDK--RGVPLR----AILVSMVISLLALLLASLNPA  351

Query  422  LVSAAGVPSAAAYGLICLGRLLCTPKRFPKPKWSLGRLSKPFQFI---GVFWNAWVVAIL  478
            +V    +  +   GLI  G +  +  RF K     GR      F    G       +A +
Sbjct  352  IVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAI  411



Lambda      K        H        a         alpha
   0.325    0.137    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 673759370


Query= TCONS_00043132

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              142     6e-38
CDD:366028 pfam00324, AA_permease, Amino acid permease                67.0    2e-12


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 142 bits (360),  Expect = 6e-38, Method: Composition-based stats.
 Identities = 113/437 (26%), Positives = 194/437 (44%), Gaps = 23/437 (5%)

Query  57   FSTTFAALYFVGGVRVTFSTGIAAGGNLAYWTSYLVTMVFTFITAAVIAEVCSASPSAGS  116
             S     +  V G  +  +  +A+GG       ++  ++F+     V AE+ SA P +G 
Sbjct  4    LSAFALVIGSVIGSGIFVAPLVASGGPALIVWGWIAAIIFSLAVGLVYAELSSALPRSGG  63

Query  117  IYLWAAEAGGPRFGRLLGFTVAWWSTTAWTTFCASNTQAAVNYMLSELTVFNVDFPTDSG  176
            IY++   A    FG+ + F   W +  A+    AS+   A +Y+LS       D      
Sbjct  64   IYVYLENA----FGKFVAFLAGWSNWFAYVLGLASSASVAASYLLS---ALGPDLVPT--  114

Query  177  DVKFRAVQWICTEILLALAALINFLPPKYFRFVFYLSSTMVLLDFVLNIIWLPIGAHDTW  236
                  + +     +L + A+IN    +    +  +   + LL  ++ II L +   D  
Sbjct  115  ----TWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLILIIILGLVTADGG  170

Query  237  GFRSAHEAFMSTYNGTGAPPAWNWCLSYLATAGILIGFDASGHVAEETKNAAVTAARGIF  296
            GF      +  T+   G P  +   L  L +     GF+++ +V+EE K   V   + IF
Sbjct  171  GFNLLSGEW-HTFFPDGWPGVFAGFLGVLWS---FTGFESAANVSEEVKKRNV--PKAIF  224

Query  297  WSTVASGVGGLATIILFLFCAPDADTLFSFGSPQPFVSLYAVVLGKGGHVFMNIICIVAL  356
               +  GV  +   I F    PD +   S G  Q    L+  V GK G + + I+  ++L
Sbjct  225  IGVIIVGVLYILVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSL  284

Query  357  WLNTAIAIVAASRLVFAVARDGVLPFSGWVSRVH-NGQPRNAVVVVWTVAALVTCTLLPS  415
                  AIV ASRL++A+ARDGVLPFS + ++V+  G P  A+++   ++ ++    L S
Sbjct  285  LGAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKFGSPIRAIILTAILSLILLLLFLLS  344

Query  416  SVAFTSLVSAAGVPSAAAYGLICLGRLLCTPKRFPKPKWSLGRLSKPFQFIGVFWNAWVV  475
              A+ +L+S +      +Y L  +G L+    R  +P         P    G+ ++ +++
Sbjct  345  PAAYNALLSLSAYGYLLSYLLPIIGLLI---LRKKRPDLGRIPGRWPVAIFGILFSLFLI  401

Query  476  AILFSPYAFPVTGENLN  492
              LF P   P TG +LN
Sbjct  402  VALFFPPVGPATGSSLN  418


>CDD:366028 pfam00324, AA_permease, Amino acid permease.  
Length=467

 Score = 67.0 bits (164),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 82/420 (20%), Positives = 149/420 (35%), Gaps = 44/420 (10%)

Query  75   STGIAAGGNLAYWTSYLVTMVFTFITAAVIAEVCSASPSAGSIYLWAAEAGGPRFGRLLG  134
             + +   G       YL++ V  F+    + E+ +  P +G  Y +A+   GP      G
Sbjct  20   GSVLGQAGPAGALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASRFLGPSL----G  75

Query  135  FTVAWWSTTAWTTFCASNTQAAVNYMLSELTVFNVDFPTDSGDVKFRAVQWICTEILLAL  194
            F   W    +W T  A    AA   +  +      D P            W+   + L L
Sbjct  76   FATGWNYWLSWITVLALELTAASILI--QFWELVPDIPY----------LWVWGAVFLVL  123

Query  195  AALINFLPPKYFRFVFYLSSTMVLLDFVLNIIWLPIGAHDTWGFRSAHEAFMS--TYNGT  252
              +IN +  K++    +  + + ++  +  II   +G     G      A       NG 
Sbjct  124  LTIINLVGVKWYGEAEFWFALIKIIAIIGFII---VGIILLSGGNPNDGAIFRYLGDNGG  180

Query  253  GAPPAWNWCLSYLATAGILI----GFDASGHVAEETKNAAVT---AARGIFWSTVASGVG  305
                   +   +++   I      G +  G  A E KN   +   A   + W      + 
Sbjct  181  KNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYIL  240

Query  306  GLATIILFLFCAPDADTLFSFG--SPQPFVSLYAVVLGKGGHVFMNIICIVALWLNTAIA  363
             L  I   L    +   L +    +  PFV  +  +   G    +N + + A  L+ A +
Sbjct  241  SLLAIG--LLVPWNDPGLLNDSASAASPFVIFFKFLGISGLAPLINAVILTAA-LSAANS  297

Query  364  -IVAASRLVFAVARDGVLP-FSGWVSRVHNGQPRNAVVVVWTVAALVTCTLLPSSVAFTS  421
             + + SR+++++ARDG+ P F   V +   G P         V+ +++   L  +    +
Sbjct  298  SLYSGSRMLYSLARDGLAPKFLKKVDK--RGVPLR----AILVSMVISLLALLLASLNPA  351

Query  422  LVSAAGVPSAAAYGLICLGRLLCTPKRFPKPKWSLGRLSKPFQFI---GVFWNAWVVAIL  478
            +V    +  +   GLI  G +  +  RF K     GR      F    G       +A +
Sbjct  352  IVFNFLLAISGLSGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKAPLGPLGVILGLAAI  411



Lambda      K        H        a         alpha
   0.326    0.137    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00037574

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00037575

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00037576

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.143    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00043134

Length=67


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.131    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83641408


Query= TCONS_00037577

Length=269


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295042848


Query= TCONS_00043135

Length=307


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 350375960


Query= TCONS_00037580

Length=285


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 320838944


Query= TCONS_00037579

Length=163


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.143    0.449    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143596972


Query= TCONS_00037582

Length=323


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00037578

Length=324


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 377450466


Query= TCONS_00037581

Length=312


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.430    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00043136

Length=318


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.134    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 367894758


Query= TCONS_00043137

Length=157


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.141    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00043138

Length=256


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00037584

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  232     2e-77
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  191     7e-62


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 232 bits (594),  Expect = 2e-77, Method: Composition-based stats.
 Identities = 92/237 (39%), Positives = 130/237 (55%), Gaps = 12/237 (5%)

Query  22   SGFGAAISRRFGEEGAKVIVADIN---VENGEKIAAQNPENLVFYKMDVTSASDWDEVMD  78
            SG G AI+R   EEGA+V++ D+N    +  E++A +          DVT     + ++ 
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAA--VLPCDVTDEEQVEALVA  63

Query  79   LAFAKFGRLDVLVNNAG-TTYRNKPTLEVTEEEWERVFNVNVRSIFLGSKALMGRLIQQG  137
             A  KFGRLD+LVNNAG       P L+ + E+++R  +VN+ S+FL +KA    L+++G
Sbjct  64   AAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKA-ALPLMKEG  122

Query  138  QGGSMINISSTGASRPRPGLVWYNASKGAVSNATKGLAAEYGPHNIRVNTVSPLLSGTGL  197
              GS++N+SS GA R  P    Y A+K A+   T+ LA E GP  IRVN +SP    T  
Sbjct  123  --GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAISPGPIKTL-  179

Query  198  FSMFTGMEDTPENREKFIGNVPLGRLTDPNDVANMCLYLASDEGSFINGAEMIVDGG  254
                +G+    E         PLGRL  P +VAN   +LASD  S+I G  + VDGG
Sbjct  180  --AASGIPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDLASYITGQVLYVDGG  234


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 191 bits (487),  Expect = 7e-62, Method: Composition-based stats.
 Identities = 76/181 (42%), Positives = 111/181 (61%), Gaps = 5/181 (3%)

Query  13   KVAIVTGGGSGFGAAISRRFGEEGAKVIVADINVENGEKIAAQNPEN---LVFYKMDVTS  69
            KVA+VTG  SG G AI++R  +EGAKV++ D + E  E +A +        +F + DVT 
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  70   ASDWDEVMDLAFAKFGRLDVLVNNAGTTYRNKPTLEVTEEEWERVFNVNVRSIFLGSKAL  129
             +    +++ A  + GRLD+LVNNAG T    P  E+++E+WERV +VN+  +F  ++A+
Sbjct  61   RAQVKALVEQAVERLGRLDILVNNAGIT-GLGPFSELSDEDWERVIDVNLTGVFNLTRAV  119

Query  130  MGRLIQQGQGGSMINISSTGASRPRPGLVWYNASKGAVSNATKGLAAEYGPHNIRVNTVS  189
            +   + +G GG ++NISS     P PG   Y+ASK AV   T+ LA E  PH IRVN V+
Sbjct  120  L-PAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVA  178

Query  190  P  190
            P
Sbjct  179  P  179



Lambda      K        H        a         alpha
   0.315    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 280685768


Query= TCONS_00037583

Length=128
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  140     1e-43
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  66.9    3e-15


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 140 bits (356),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 49/117 (42%), Positives = 63/117 (54%), Gaps = 3/117 (3%)

Query  9    QGGSMINISSTGASRPRPGLVWYNASKGAVSNATKGLAAEYGPHNIRVNTVSPLLSGTGL  68
            +GGS++N+SS GA R  P    Y A+K A+   T+ LA E GP  IRVN +SP    T  
Sbjct  121  EGGSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAISPGPIKTL-  179

Query  69   FSMFTGMEDTPENREKFIGNVPLGRLTDPNDVANMCLYLASDEGSFINGAEMIVDGG  125
                +G+    E         PLGRL  P +VAN   +LASD  S+I G  + VDGG
Sbjct  180  --AASGIPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDLASYITGQVLYVDGG  234


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 66.9 bits (164),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 28/54 (52%), Positives = 33/54 (61%), Gaps = 0/54 (0%)

Query  8    GQGGSMINISSTGASRPRPGLVWYNASKGAVSNATKGLAAEYGPHNIRVNTVSP  61
            G GG ++NISS     P PG   Y+ASK AV   T+ LA E  PH IRVN V+P
Sbjct  126  GSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVAP  179



Lambda      K        H        a         alpha
   0.315    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00037586

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  184     3e-60
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  167     5e-53


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 184 bits (470),  Expect = 3e-60, Method: Composition-based stats.
 Identities = 75/179 (42%), Positives = 109/179 (61%), Gaps = 5/179 (3%)

Query  13   KVAIVTGGGSGFGAAISRRFGEEGAKVIVADINVENGEKIAAQNPEN---LVFYKMDVTS  69
            KVA+VTG  SG G AI++R  +EGAKV++ D + E  E +A +        +F + DVT 
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  70   ASDWDEVMDLAFAKFGRLDVLVNNAGTTYRNKPTLEVTEEEWERVFNVNVRSIFLGSKAL  129
             +    +++ A  + GRLD+LVNNAG T    P  E+++E+WERV +VN+  +F  ++A+
Sbjct  61   RAQVKALVEQAVERLGRLDILVNNAGIT-GLGPFSELSDEDWERVIDVNLTGVFNLTRAV  119

Query  130  MGRLIQQGQGGSMINISSTGASRPRPGLVWYNASKGAVSNATKGLAAEYGPHNIRVNTV  188
            +   + +G GG ++NISS     P PG   Y+ASK AV   T+ LA E  PH IRVN V
Sbjct  120  L-PAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAV  177


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 167 bits (426),  Expect = 5e-53, Method: Composition-based stats.
 Identities = 68/172 (40%), Positives = 100/172 (58%), Gaps = 9/172 (5%)

Query  22   SGFGAAISRRFGEEGAKVIVADIN---VENGEKIAAQNPENLVFYKMDVTSASDWDEVMD  78
            SG G AI+R   EEGA+V++ D+N    +  E++A +          DVT     + ++ 
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAA--VLPCDVTDEEQVEALVA  63

Query  79   LAFAKFGRLDVLVNNAG-TTYRNKPTLEVTEEEWERVFNVNVRSIFLGSKALMGRLIQQG  137
             A  KFGRLD+LVNNAG       P L+ + E+++R  +VN+ S+FL +KA    L+++G
Sbjct  64   AAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKA-ALPLMKEG  122

Query  138  QGGSMINISSTGASRPRPGLVWYNASKGAVSNATKGLAAEYGPHNIRVNTVS  189
              GS++N+SS GA R  P    Y A+K A+   T+ LA E GP  IRVN +S
Sbjct  123  --GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAIS  172



Lambda      K        H        a         alpha
   0.314    0.131    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00037585

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  185     1e-60
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  167     3e-53


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 185 bits (472),  Expect = 1e-60, Method: Composition-based stats.
 Identities = 75/179 (42%), Positives = 109/179 (61%), Gaps = 5/179 (3%)

Query  13   KVAIVTGGGSGFGAAISRRFGEEGAKVIVADINVENGEKIAAQNPEN---LVFYKMDVTS  69
            KVA+VTG  SG G AI++R  +EGAKV++ D + E  E +A +        +F + DVT 
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  70   ASDWDEVMDLAFAKFGRLDVLVNNAGTTYRNKPTLEVTEEEWERVFNVNVRSIFLGSKAL  129
             +    +++ A  + GRLD+LVNNAG T    P  E+++E+WERV +VN+  +F  ++A+
Sbjct  61   RAQVKALVEQAVERLGRLDILVNNAGIT-GLGPFSELSDEDWERVIDVNLTGVFNLTRAV  119

Query  130  MGRLIQQGQGGSMINISSTGASRPRPGLVWYNASKGAVSNVTKGLAAEYGPHNIRVNTV  188
            +   + +G GG ++NISS     P PG   Y+ASK AV   T+ LA E  PH IRVN V
Sbjct  120  L-PAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAV  177


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 167 bits (427),  Expect = 3e-53, Method: Composition-based stats.
 Identities = 68/172 (40%), Positives = 101/172 (59%), Gaps = 9/172 (5%)

Query  22   SGFGAAISRRFGEEGAKVIVADIN---VENGEKIAAQNPENLVFYKMDVTSASDWDEVMD  78
            SG G AI+R   EEGA+V++ D+N    +  E++A +          DVT     + ++ 
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAA--VLPCDVTDEEQVEALVA  63

Query  79   LAFAKFGRLDVLVNNAG-TTYRNKPTLEVTEEEWERVFNVNVRSIFLGSKALMGRLIQQG  137
             A  KFGRLD+LVNNAG       P L+ + E+++R  +VN+ S+FL +KA    L+++G
Sbjct  64   AAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKA-ALPLMKEG  122

Query  138  QGGSMINISSTGASRPRPGLVWYNASKGAVSNVTKGLAAEYGPHNIRVNTVS  189
              GS++N+SS GA R  P    Y A+K A+  +T+ LA E GP  IRVN +S
Sbjct  123  --GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAIS  172



Lambda      K        H        a         alpha
   0.314    0.131    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180916456


Query= TCONS_00043139

Length=181


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.144    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 167389992


Query= TCONS_00043140

Length=256


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00037587

Length=106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  97.7    2e-27
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  72.1    2e-17


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 97.7 bits (244),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 36/86 (42%), Positives = 53/86 (62%), Gaps = 3/86 (3%)

Query  13  KVAIVTGGGSGFGAAISRRFGEEGAKVIVADINVENGEKIAAQNPEN---LVFYKMDVTS  69
           KVA+VTG  SG G AI++R  +EGAKV++ D + E  E +A +        +F + DVT 
Sbjct  1   KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  70  ASDWDEVMDLAFAKFGRLDVLVNNAG  95
            +    +++ A  + GRLD+LVNNAG
Sbjct  61  RAQVKALVEQAVERLGRLDILVNNAG  86


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 72.1 bits (178),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query  22  SGFGAAISRRFGEEGAKVIVADIN---VENGEKIAAQNPENLVFYKMDVTSASDWDEVMD  78
           SG G AI+R   EEGA+V++ D+N    +  E++A +          DVT     + ++ 
Sbjct  6   SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAA--VLPCDVTDEEQVEALVA  63

Query  79  LAFAKFGRLDVLVNNAG  95
            A  KFGRLD+LVNNAG
Sbjct  64  AAVEKFGRLDILVNNAG  80



Lambda      K        H        a         alpha
   0.316    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00043141

Length=256


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 279053874


Query= TCONS_00043142

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00043143

Length=106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  97.7    2e-27
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  72.1    2e-17


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 97.7 bits (244),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 36/86 (42%), Positives = 53/86 (62%), Gaps = 3/86 (3%)

Query  13  KVAIVTGGGSGFGAAISRRFGEEGAKVIVADINVENGEKIAAQNPEN---LVFYKMDVTS  69
           KVA+VTG  SG G AI++R  +EGAKV++ D + E  E +A +        +F + DVT 
Sbjct  1   KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  70  ASDWDEVMDLAFAKFGRLDVLVNNAG  95
            +    +++ A  + GRLD+LVNNAG
Sbjct  61  RAQVKALVEQAVERLGRLDILVNNAG  86


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 72.1 bits (178),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query  22  SGFGAAISRRFGEEGAKVIVADIN---VENGEKIAAQNPENLVFYKMDVTSASDWDEVMD  78
           SG G AI+R   EEGA+V++ D+N    +  E++A +          DVT     + ++ 
Sbjct  6   SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAA--VLPCDVTDEEQVEALVA  63

Query  79  LAFAKFGRLDVLVNNAG  95
            A  KFGRLD+LVNNAG
Sbjct  64  AAVEKFGRLDILVNNAG  80



Lambda      K        H        a         alpha
   0.316    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00037588

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  188     8e-62
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  171     2e-54


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 188 bits (481),  Expect = 8e-62, Method: Composition-based stats.
 Identities = 76/181 (42%), Positives = 111/181 (61%), Gaps = 5/181 (3%)

Query  13   KVAIVTGGGSGFGAAISRRFGEEGAKVIVADINVENGEKIAAQNPEN---LVFYKMDVTS  69
            KVA+VTG  SG G AI++R  +EGAKV++ D + E  E +A +        +F + DVT 
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  70   ASDWDEVMDLAFAKFGRLDVLVNNAGTTYRNKPTLEVTEEEWERVFNVNVRSIFLGSKAL  129
             +    +++ A  + GRLD+LVNNAG T    P  E+++E+WERV +VN+  +F  ++A+
Sbjct  61   RAQVKALVEQAVERLGRLDILVNNAGIT-GLGPFSELSDEDWERVIDVNLTGVFNLTRAV  119

Query  130  MGRLIQQGQGGSMINISSTGASRPRPGLVWYNASKGAVSNATKGLAAEYGPHNIRVNTVS  189
            +   + +G GG ++NISS     P PG   Y+ASK AV   T+ LA E  PH IRVN V+
Sbjct  120  L-PAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVA  178

Query  190  P  190
            P
Sbjct  179  P  179


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 171 bits (437),  Expect = 2e-54, Method: Composition-based stats.
 Identities = 69/173 (40%), Positives = 101/173 (58%), Gaps = 9/173 (5%)

Query  22   SGFGAAISRRFGEEGAKVIVADIN---VENGEKIAAQNPENLVFYKMDVTSASDWDEVMD  78
            SG G AI+R   EEGA+V++ D+N    +  E++A +          DVT     + ++ 
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAA--VLPCDVTDEEQVEALVA  63

Query  79   LAFAKFGRLDVLVNNAG-TTYRNKPTLEVTEEEWERVFNVNVRSIFLGSKALMGRLIQQG  137
             A  KFGRLD+LVNNAG       P L+ + E+++R  +VN+ S+FL +KA    L+++G
Sbjct  64   AAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKA-ALPLMKEG  122

Query  138  QGGSMINISSTGASRPRPGLVWYNASKGAVSNATKGLAAEYGPHNIRVNTVSP  190
              GS++N+SS GA R  P    Y A+K A+   T+ LA E GP  IRVN +SP
Sbjct  123  --GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAISP  173



Lambda      K        H        a         alpha
   0.315    0.132    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 197198060


Query= TCONS_00037589

Length=272


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.144    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 299879616


Query= TCONS_00037590

Length=106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  97.7    2e-27
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  72.1    2e-17


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 97.7 bits (244),  Expect = 2e-27, Method: Composition-based stats.
 Identities = 36/86 (42%), Positives = 53/86 (62%), Gaps = 3/86 (3%)

Query  13  KVAIVTGGGSGFGAAISRRFGEEGAKVIVADINVENGEKIAAQNPEN---LVFYKMDVTS  69
           KVA+VTG  SG G AI++R  +EGAKV++ D + E  E +A +        +F + DVT 
Sbjct  1   KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  70  ASDWDEVMDLAFAKFGRLDVLVNNAG  95
            +    +++ A  + GRLD+LVNNAG
Sbjct  61  RAQVKALVEQAVERLGRLDILVNNAG  86


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 72.1 bits (178),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query  22  SGFGAAISRRFGEEGAKVIVADIN---VENGEKIAAQNPENLVFYKMDVTSASDWDEVMD  78
           SG G AI+R   EEGA+V++ D+N    +  E++A +          DVT     + ++ 
Sbjct  6   SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAA--VLPCDVTDEEQVEALVA  63

Query  79  LAFAKFGRLDVLVNNAG  95
            A  KFGRLD+LVNNAG
Sbjct  64  AAVEKFGRLDILVNNAG  80



Lambda      K        H        a         alpha
   0.316    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83010814


Query= TCONS_00043144

Length=75


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.139    0.466    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81718824


Query= TCONS_00037591

Length=125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  140     2e-43
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  66.5    3e-15


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 140 bits (355),  Expect = 2e-43, Method: Composition-based stats.
 Identities = 49/117 (42%), Positives = 63/117 (54%), Gaps = 3/117 (3%)

Query  9    QGGSMINISSTGASRPRPGLVWYNASKGAVSNATKGLAAEYGPHNIRVNTVSPLLSGTGL  68
            +GGS++N+SS GA R  P    Y A+K A+   T+ LA E GP  IRVN +SP    T  
Sbjct  121  EGGSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAISPGPIKTL-  179

Query  69   FSMFTGMEDTPENREKFIGNVPLGRLTDPNDVANMCLYLASDEGSFINGAEMIVDGG  125
                +G+    E         PLGRL  P +VAN   +LASD  S+I G  + VDGG
Sbjct  180  --AASGIPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDLASYITGQVLYVDGG  234


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 66.5 bits (163),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 28/54 (52%), Positives = 33/54 (61%), Gaps = 0/54 (0%)

Query  8    GQGGSMINISSTGASRPRPGLVWYNASKGAVSNATKGLAAEYGPHNIRVNTVSP  61
            G GG ++NISS     P PG   Y+ASK AV   T+ LA E  PH IRVN V+P
Sbjct  126  GSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVAP  179



Lambda      K        H        a         alpha
   0.314    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0882    0.140     1.90     42.6     43.6 

Effective search space used: 85871904


Query= TCONS_00043145

Length=128
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  140     1e-43
CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  66.9    3e-15


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 140 bits (356),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 49/117 (42%), Positives = 63/117 (54%), Gaps = 3/117 (3%)

Query  9    QGGSMINISSTGASRPRPGLVWYNASKGAVSNATKGLAAEYGPHNIRVNTVSPLLSGTGL  68
            +GGS++N+SS GA R  P    Y A+K A+   T+ LA E GP  IRVN +SP    T  
Sbjct  121  EGGSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAISPGPIKTL-  179

Query  69   FSMFTGMEDTPENREKFIGNVPLGRLTDPNDVANMCLYLASDEGSFINGAEMIVDGG  125
                +G+    E         PLGRL  P +VAN   +LASD  S+I G  + VDGG
Sbjct  180  --AASGIPGFDELLAAAEARAPLGRLGTPEEVANAAAFLASDLASYITGQVLYVDGG  234


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 66.9 bits (164),  Expect = 3e-15, Method: Composition-based stats.
 Identities = 28/54 (52%), Positives = 33/54 (61%), Gaps = 0/54 (0%)

Query  8    GQGGSMINISSTGASRPRPGLVWYNASKGAVSNATKGLAAEYGPHNIRVNTVSP  61
            G GG ++NISS     P PG   Y+ASK AV   T+ LA E  PH IRVN V+P
Sbjct  126  GSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVAP  179



Lambda      K        H        a         alpha
   0.315    0.135    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00037592

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395056 pfam00106, adh_short, short chain dehydrogenase. This ...  191     3e-62
CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) ...  192     4e-62


>CDD:395056 pfam00106, adh_short, short chain dehydrogenase.  This family 
contains a wide variety of dehydrogenases.
Length=195

 Score = 191 bits (487),  Expect = 3e-62, Method: Composition-based stats.
 Identities = 76/181 (42%), Positives = 111/181 (61%), Gaps = 5/181 (3%)

Query  13   KVAIVTGGGSGFGAAISRRFGEEGAKVIVADINVENGEKIAAQNPEN---LVFYKMDVTS  69
            KVA+VTG  SG G AI++R  +EGAKV++ D + E  E +A +        +F + DVT 
Sbjct  1    KVALVTGASSGIGRAIAKRLAKEGAKVVLVDRSEEKLEAVAKELGALGGKALFIQGDVTD  60

Query  70   ASDWDEVMDLAFAKFGRLDVLVNNAGTTYRNKPTLEVTEEEWERVFNVNVRSIFLGSKAL  129
             +    +++ A  + GRLD+LVNNAG T    P  E+++E+WERV +VN+  +F  ++A+
Sbjct  61   RAQVKALVEQAVERLGRLDILVNNAGIT-GLGPFSELSDEDWERVIDVNLTGVFNLTRAV  119

Query  130  MGRLIQQGQGGSMINISSTGASRPRPGLVWYNASKGAVSNATKGLAAEYGPHNIRVNTVS  189
            +   + +G GG ++NISS     P PG   Y+ASK AV   T+ LA E  PH IRVN V+
Sbjct  120  L-PAMIKGSGGRIVNISSVAGLVPYPGGSAYSASKAAVIGFTRSLALELAPHGIRVNAVA  178

Query  190  P  190
            P
Sbjct  179  P  179


>CDD:433310 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase. 
 
Length=236

 Score = 192 bits (490),  Expect = 4e-62, Method: Composition-based stats.
 Identities = 80/213 (38%), Positives = 115/213 (54%), Gaps = 12/213 (6%)

Query  22   SGFGAAISRRFGEEGAKVIVADIN---VENGEKIAAQNPENLVFYKMDVTSASDWDEVMD  78
            SG G AI+R   EEGA+V++ D+N    +  E++A +          DVT     + ++ 
Sbjct  6    SGIGWAIARALAEEGAEVVLTDLNEALAKRVEELAEELGAA--VLPCDVTDEEQVEALVA  63

Query  79   LAFAKFGRLDVLVNNAG-TTYRNKPTLEVTEEEWERVFNVNVRSIFLGSKALMGRLIQQG  137
             A  KFGRLD+LVNNAG       P L+ + E+++R  +VN+ S+FL +KA    L+++G
Sbjct  64   AAVEKFGRLDILVNNAGFAPKLKGPFLDTSREDFDRALDVNLYSLFLLAKA-ALPLMKEG  122

Query  138  QGGSMINISSTGASRPRPGLVWYNASKGAVSNATKGLAAEYGPHNIRVNTVSPLLSGTGL  197
              GS++N+SS GA R  P    Y A+K A+   T+ LA E GP  IRVN +SP    T  
Sbjct  123  --GSIVNLSSIGAERVVPNYNAYGAAKAALEALTRYLAVELGPRGIRVNAISPGPIKTL-  179

Query  198  FSMFTGMEDTPENREKFIGNVPLGRLTDPNDVA  230
                +G+    E         PLGRL  P +VA
Sbjct  180  --AASGIPGFDELLAAAEARAPLGRLGTPEEVA  210



Lambda      K        H        a         alpha
   0.314    0.133    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241123672


Query= TCONS_00043147

Length=613
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:379330 pfam13679, Methyltransf_32, Methyltransferase domain. ...  64.5    6e-13


>CDD:379330 pfam13679, Methyltransf_32, Methyltransferase domain.  This family 
appears to be a methyltransferase domain.
Length=138

 Score = 64.5 bits (158),  Expect = 6e-13, Method: Composition-based stats.
 Identities = 22/76 (29%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query  152  KKYHEVAHFSRYVNDLCDTVAEERGEAISHIVDFGSGQNYLGRTLASPPYNKHIIAIERK  211
            KK H+V H + ++  L   + +E G     IVD G+G+ YLG  L    Y   +  I+ +
Sbjct  1    KKLHQVEHLAEFIAPLLKELLDENGPI--TIVDHGAGKGYLGFILYYLKYGVRVYGIDTR  58

Query  212  HQFISGAKGMDIHAKL  227
             + +   K   +  KL
Sbjct  59   AELV--EKANALAQKL  72



Lambda      K        H        a         alpha
   0.317    0.136    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 778596988


Query= TCONS_00037593

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00037594

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00037595

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00043149

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398829 pfam05368, NmrA, NmrA-like family. NmrA is a negative ...  262     7e-90
CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding                 65.3    8e-14


>CDD:398829 pfam05368, NmrA, NmrA-like family.  NmrA is a negative transcriptional 
regulator involved in the post-translational modification 
of the transcription factor AreA. NmrA is part of a 
system controlling nitrogen metabolite repression in fungi. 
This family only contains a few sequences as iteration results 
in significant matches to other Rossmann fold families.
Length=236

 Score = 262 bits (671),  Expect = 7e-90, Method: Composition-based stats.
 Identities = 80/211 (38%), Positives = 114/211 (54%), Gaps = 7/211 (3%)

Query  8    IAVVNATGRQAASLIRVASAVGHNVRAQIHSLKGIIAEELQGLPNVTLFQGSLLNNTALM  67
            I V  ATG+Q  S++R +   GH VRA +   K  +A+ L+    V L +G L ++   +
Sbjct  1    ILVFGATGQQGGSVVRASLKAGHKVRALVRDPKSELAKSLKEAG-VELVKGDL-DDKESL  58

Query  68   DTLFQGANLAFINTTSQMGDEVAIGKALADAAKRAGSIQHYVYSSMPDHS--VHGPWPPV  125
                +G ++ F  T    G E+  GK LADAAK AG ++H++ SS  + +   +G  P V
Sbjct  59   VEALKGVDVVFSVTGFWAGKEIEDGKKLADAAKEAG-VKHFIPSSFGNDNDISNGVEPAV  117

Query  126  PLWAPKFTVENYIRQLGLPATFVYAGIYNNNFTSLPYPLFQMELMPDG-SFEWHAPFDPD  184
            P +  K  +E YIR LG+P TFVYAG +  NF SL  PLF  +L P    F    P +P 
Sbjct  118  PHFDSKAEIERYIRALGIPYTFVYAGFFMQNFLSLLAPLFPGDLSPPEDKFTLLGPGNPK  177

Query  185  TPLPWLDAEHDVGPALLQIFKDGPKKWHGHR  215
                W+D EHD+G  ++ I  D P+K  G R
Sbjct  178  AVPLWMDDEHDIGTFVIAILDD-PRKLKGKR  207


>CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding.  
Length=183

 Score = 65.3 bits (160),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 42/152 (28%), Positives = 62/152 (41%), Gaps = 13/152 (9%)

Query  13   ATGRQAASLIRVASAVGHNVRAQIHSLKGIIAEELQGLPNVTLFQGSLLNNTALMDTLFQ  72
            ATG+    L++   A GH V A + + +     +L+  P V +  G +L+   L      
Sbjct  2    ATGKIGRLLVKQLLARGHEVTALVRNPE--KLADLEDHPGVEVVDGDVLDPDDL-AEALA  58

Query  73   GANLAFINTTSQMGDEVAIGKALADAAKRAGSIQHYVY-SSMP-DHSVHGPWPPV-----  125
            G +           DE    K + DAAK AG ++ +V  SS+     V GP+ P      
Sbjct  59   GQDAVISALGGGGTDETGA-KNIIDAAKAAG-VKRFVLVSSLGVGDEVPGPFGPWNKEML  116

Query  126  -PLWAPKFTVENYIRQLGLPATFVYAGIYNNN  156
             P  A K   E  +R  GL  T V  G   + 
Sbjct  117  GPYLAAKRAAEELLRASGLDYTIVRPGWLTDG  148



Lambda      K        H        a         alpha
   0.320    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00043148

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398829 pfam05368, NmrA, NmrA-like family. NmrA is a negative ...  262     7e-90
CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding                 65.3    8e-14


>CDD:398829 pfam05368, NmrA, NmrA-like family.  NmrA is a negative transcriptional 
regulator involved in the post-translational modification 
of the transcription factor AreA. NmrA is part of a 
system controlling nitrogen metabolite repression in fungi. 
This family only contains a few sequences as iteration results 
in significant matches to other Rossmann fold families.
Length=236

 Score = 262 bits (671),  Expect = 7e-90, Method: Composition-based stats.
 Identities = 80/211 (38%), Positives = 114/211 (54%), Gaps = 7/211 (3%)

Query  8    IAVVNATGRQAASLIRVASAVGHNVRAQIHSLKGIIAEELQGLPNVTLFQGSLLNNTALM  67
            I V  ATG+Q  S++R +   GH VRA +   K  +A+ L+    V L +G L ++   +
Sbjct  1    ILVFGATGQQGGSVVRASLKAGHKVRALVRDPKSELAKSLKEAG-VELVKGDL-DDKESL  58

Query  68   DTLFQGANLAFINTTSQMGDEVAIGKALADAAKRAGSIQHYVYSSMPDHS--VHGPWPPV  125
                +G ++ F  T    G E+  GK LADAAK AG ++H++ SS  + +   +G  P V
Sbjct  59   VEALKGVDVVFSVTGFWAGKEIEDGKKLADAAKEAG-VKHFIPSSFGNDNDISNGVEPAV  117

Query  126  PLWAPKFTVENYIRQLGLPATFVYAGIYNNNFTSLPYPLFQMELMPDG-SFEWHAPFDPD  184
            P +  K  +E YIR LG+P TFVYAG +  NF SL  PLF  +L P    F    P +P 
Sbjct  118  PHFDSKAEIERYIRALGIPYTFVYAGFFMQNFLSLLAPLFPGDLSPPEDKFTLLGPGNPK  177

Query  185  TPLPWLDAEHDVGPALLQIFKDGPKKWHGHR  215
                W+D EHD+G  ++ I  D P+K  G R
Sbjct  178  AVPLWMDDEHDIGTFVIAILDD-PRKLKGKR  207


>CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding.  
Length=183

 Score = 65.3 bits (160),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 42/152 (28%), Positives = 62/152 (41%), Gaps = 13/152 (9%)

Query  13   ATGRQAASLIRVASAVGHNVRAQIHSLKGIIAEELQGLPNVTLFQGSLLNNTALMDTLFQ  72
            ATG+    L++   A GH V A + + +     +L+  P V +  G +L+   L      
Sbjct  2    ATGKIGRLLVKQLLARGHEVTALVRNPE--KLADLEDHPGVEVVDGDVLDPDDL-AEALA  58

Query  73   GANLAFINTTSQMGDEVAIGKALADAAKRAGSIQHYVY-SSMP-DHSVHGPWPPV-----  125
            G +           DE    K + DAAK AG ++ +V  SS+     V GP+ P      
Sbjct  59   GQDAVISALGGGGTDETGA-KNIIDAAKAAG-VKRFVLVSSLGVGDEVPGPFGPWNKEML  116

Query  126  -PLWAPKFTVENYIRQLGLPATFVYAGIYNNN  156
             P  A K   E  +R  GL  T V  G   + 
Sbjct  117  GPYLAAKRAAEELLRASGLDYTIVRPGWLTDG  148



Lambda      K        H        a         alpha
   0.320    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00043150

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398829 pfam05368, NmrA, NmrA-like family. NmrA is a negative ...  262     7e-90
CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding                 65.3    8e-14


>CDD:398829 pfam05368, NmrA, NmrA-like family.  NmrA is a negative transcriptional 
regulator involved in the post-translational modification 
of the transcription factor AreA. NmrA is part of a 
system controlling nitrogen metabolite repression in fungi. 
This family only contains a few sequences as iteration results 
in significant matches to other Rossmann fold families.
Length=236

 Score = 262 bits (671),  Expect = 7e-90, Method: Composition-based stats.
 Identities = 80/211 (38%), Positives = 114/211 (54%), Gaps = 7/211 (3%)

Query  8    IAVVNATGRQAASLIRVASAVGHNVRAQIHSLKGIIAEELQGLPNVTLFQGSLLNNTALM  67
            I V  ATG+Q  S++R +   GH VRA +   K  +A+ L+    V L +G L ++   +
Sbjct  1    ILVFGATGQQGGSVVRASLKAGHKVRALVRDPKSELAKSLKEAG-VELVKGDL-DDKESL  58

Query  68   DTLFQGANLAFINTTSQMGDEVAIGKALADAAKRAGSIQHYVYSSMPDHS--VHGPWPPV  125
                +G ++ F  T    G E+  GK LADAAK AG ++H++ SS  + +   +G  P V
Sbjct  59   VEALKGVDVVFSVTGFWAGKEIEDGKKLADAAKEAG-VKHFIPSSFGNDNDISNGVEPAV  117

Query  126  PLWAPKFTVENYIRQLGLPATFVYAGIYNNNFTSLPYPLFQMELMPDG-SFEWHAPFDPD  184
            P +  K  +E YIR LG+P TFVYAG +  NF SL  PLF  +L P    F    P +P 
Sbjct  118  PHFDSKAEIERYIRALGIPYTFVYAGFFMQNFLSLLAPLFPGDLSPPEDKFTLLGPGNPK  177

Query  185  TPLPWLDAEHDVGPALLQIFKDGPKKWHGHR  215
                W+D EHD+G  ++ I  D P+K  G R
Sbjct  178  AVPLWMDDEHDIGTFVIAILDD-PRKLKGKR  207


>CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding.  
Length=183

 Score = 65.3 bits (160),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 42/152 (28%), Positives = 62/152 (41%), Gaps = 13/152 (9%)

Query  13   ATGRQAASLIRVASAVGHNVRAQIHSLKGIIAEELQGLPNVTLFQGSLLNNTALMDTLFQ  72
            ATG+    L++   A GH V A + + +     +L+  P V +  G +L+   L      
Sbjct  2    ATGKIGRLLVKQLLARGHEVTALVRNPE--KLADLEDHPGVEVVDGDVLDPDDL-AEALA  58

Query  73   GANLAFINTTSQMGDEVAIGKALADAAKRAGSIQHYVY-SSMP-DHSVHGPWPPV-----  125
            G +           DE    K + DAAK AG ++ +V  SS+     V GP+ P      
Sbjct  59   GQDAVISALGGGGTDETGA-KNIIDAAKAAG-VKRFVLVSSLGVGDEVPGPFGPWNKEML  116

Query  126  -PLWAPKFTVENYIRQLGLPATFVYAGIYNNN  156
             P  A K   E  +R  GL  T V  G   + 
Sbjct  117  GPYLAAKRAAEELLRASGLDYTIVRPGWLTDG  148



Lambda      K        H        a         alpha
   0.320    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00037596

Length=215
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:398829 pfam05368, NmrA, NmrA-like family. NmrA is a negative ...  262     7e-90
CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding                 65.3    8e-14


>CDD:398829 pfam05368, NmrA, NmrA-like family.  NmrA is a negative transcriptional 
regulator involved in the post-translational modification 
of the transcription factor AreA. NmrA is part of a 
system controlling nitrogen metabolite repression in fungi. 
This family only contains a few sequences as iteration results 
in significant matches to other Rossmann fold families.
Length=236

 Score = 262 bits (671),  Expect = 7e-90, Method: Composition-based stats.
 Identities = 80/211 (38%), Positives = 114/211 (54%), Gaps = 7/211 (3%)

Query  8    IAVVNATGRQAASLIRVASAVGHNVRAQIHSLKGIIAEELQGLPNVTLFQGSLLNNTALM  67
            I V  ATG+Q  S++R +   GH VRA +   K  +A+ L+    V L +G L ++   +
Sbjct  1    ILVFGATGQQGGSVVRASLKAGHKVRALVRDPKSELAKSLKEAG-VELVKGDL-DDKESL  58

Query  68   DTLFQGANLAFINTTSQMGDEVAIGKALADAAKRAGSIQHYVYSSMPDHS--VHGPWPPV  125
                +G ++ F  T    G E+  GK LADAAK AG ++H++ SS  + +   +G  P V
Sbjct  59   VEALKGVDVVFSVTGFWAGKEIEDGKKLADAAKEAG-VKHFIPSSFGNDNDISNGVEPAV  117

Query  126  PLWAPKFTVENYIRQLGLPATFVYAGIYNNNFTSLPYPLFQMELMPDG-SFEWHAPFDPD  184
            P +  K  +E YIR LG+P TFVYAG +  NF SL  PLF  +L P    F    P +P 
Sbjct  118  PHFDSKAEIERYIRALGIPYTFVYAGFFMQNFLSLLAPLFPGDLSPPEDKFTLLGPGNPK  177

Query  185  TPLPWLDAEHDVGPALLQIFKDGPKKWHGHR  215
                W+D EHD+G  ++ I  D P+K  G R
Sbjct  178  AVPLWMDDEHDIGTFVIAILDD-PRKLKGKR  207


>CDD:463885 pfam13460, NAD_binding_10, NAD(P)H-binding.  
Length=183

 Score = 65.3 bits (160),  Expect = 8e-14, Method: Composition-based stats.
 Identities = 42/152 (28%), Positives = 62/152 (41%), Gaps = 13/152 (9%)

Query  13   ATGRQAASLIRVASAVGHNVRAQIHSLKGIIAEELQGLPNVTLFQGSLLNNTALMDTLFQ  72
            ATG+    L++   A GH V A + + +     +L+  P V +  G +L+   L      
Sbjct  2    ATGKIGRLLVKQLLARGHEVTALVRNPE--KLADLEDHPGVEVVDGDVLDPDDL-AEALA  58

Query  73   GANLAFINTTSQMGDEVAIGKALADAAKRAGSIQHYVY-SSMP-DHSVHGPWPPV-----  125
            G +           DE    K + DAAK AG ++ +V  SS+     V GP+ P      
Sbjct  59   GQDAVISALGGGGTDETGA-KNIIDAAKAAG-VKRFVLVSSLGVGDEVPGPFGPWNKEML  116

Query  126  -PLWAPKFTVENYIRQLGLPATFVYAGIYNNN  156
             P  A K   E  +R  GL  T V  G   + 
Sbjct  117  GPYLAAKRAAEELLRASGLDYTIVRPGWLTDG  148



Lambda      K        H        a         alpha
   0.320    0.135    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 220594440


Query= TCONS_00043151

Length=122


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83197256


Query= TCONS_00037598

Length=101


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.125    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81259152


Query= TCONS_00037599

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459913 pfam00710, Asparaginase, Asparaginase, N-terminal. Thi...  212     4e-69
CDD:465490 pfam17763, Asparaginase_C, Glutaminase/Asparaginase C-...  83.3    2e-20


>CDD:459913 pfam00710, Asparaginase, Asparaginase, N-terminal.  This is the 
N-terminal domain of this enzyme.
Length=188

 Score = 212 bits (542),  Expect = 4e-69, Method: Composition-based stats.
 Identities = 82/222 (37%), Positives = 101/222 (45%), Gaps = 38/222 (17%)

Query  24   VLIIMTGGTICMKQSPSG--FVPARGFQEQCLARVPTFNDGSSSTMMDVVVNAAREIRPH  81
            VLI+ TGGTI  +   SG   VPA   +E  LA VP                   E+   
Sbjct  1    VLILATGGTIASRADSSGGAVVPALTGEEL-LAAVP-------------------ELADI  40

Query  82   PSLRTPQTLYGRRVRYTVFEFEELLDSSSIDAKGWTEIARTIERNYTLFDAFVVLHGTDS  141
              +                E    +DSS++    W  +AR I      +D  VV HGTD+
Sbjct  41   AEIE--------------AEQVANIDSSNMTPADWLRLARRIAEALDDYDGVVVTHGTDT  86

Query  142  LAYTCSALSFMLQNLGKTVVLTGAQAPMLELQNDATDNLLGSLVVAGHF--VIPEVCLYF  199
            L  T SALSFML+NLGK VVLTG+Q P  E  +D   NLL +L VA       P V + F
Sbjct  87   LEETASALSFMLKNLGKPVVLTGSQRPSDEPSSDGPMNLLAALRVAASPAARGPGVLVVF  146

Query  200  NNKLFRGNRSCKVAASDFAAFDSPNFPPLAVTTSMRTNVNWE  241
            N+KL R  R  K   S   AFDSPNF PL      +  +  E
Sbjct  147  NDKLHRARRVTKTHTSSLDAFDSPNFGPLGEVDGGQVELYRE  188


>CDD:465490 pfam17763, Asparaginase_C, Glutaminase/Asparaginase C-terminal 
domain.  This domain is found at the C-terminus of asparaginase 
enzymes.
Length=114

 Score = 83.3 bits (207),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 42/66 (64%), Gaps = 5/66 (8%)

Query  262  HVACLRIFPGIKPEMVDAVLKLEGLRGLVLETFGAGNAPHGQDNAMTNVLADAIKRGIVI  321
             V  L ++PG+ PE++DA L   G +G+V+  FGAGN P    +A+ + L +A+ RGI +
Sbjct  1    RVDILYLYPGMDPELLDAALA-AGAKGIVIAGFGAGNVP----SALLDALKEAVARGIPV  55

Query  322  VNVTQC  327
            V  ++C
Sbjct  56   VRSSRC  61



Lambda      K        H        a         alpha
   0.322    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00037600

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459913 pfam00710, Asparaginase, Asparaginase, N-terminal. Thi...  212     4e-69
CDD:465490 pfam17763, Asparaginase_C, Glutaminase/Asparaginase C-...  83.3    2e-20


>CDD:459913 pfam00710, Asparaginase, Asparaginase, N-terminal.  This is the 
N-terminal domain of this enzyme.
Length=188

 Score = 212 bits (542),  Expect = 4e-69, Method: Composition-based stats.
 Identities = 82/222 (37%), Positives = 101/222 (45%), Gaps = 38/222 (17%)

Query  24   VLIIMTGGTICMKQSPSG--FVPARGFQEQCLARVPTFNDGSSSTMMDVVVNAAREIRPH  81
            VLI+ TGGTI  +   SG   VPA   +E  LA VP                   E+   
Sbjct  1    VLILATGGTIASRADSSGGAVVPALTGEEL-LAAVP-------------------ELADI  40

Query  82   PSLRTPQTLYGRRVRYTVFEFEELLDSSSIDAKGWTEIARTIERNYTLFDAFVVLHGTDS  141
              +                E    +DSS++    W  +AR I      +D  VV HGTD+
Sbjct  41   AEIE--------------AEQVANIDSSNMTPADWLRLARRIAEALDDYDGVVVTHGTDT  86

Query  142  LAYTCSALSFMLQNLGKTVVLTGAQAPMLELQNDATDNLLGSLVVAGHF--VIPEVCLYF  199
            L  T SALSFML+NLGK VVLTG+Q P  E  +D   NLL +L VA       P V + F
Sbjct  87   LEETASALSFMLKNLGKPVVLTGSQRPSDEPSSDGPMNLLAALRVAASPAARGPGVLVVF  146

Query  200  NNKLFRGNRSCKVAASDFAAFDSPNFPPLAVTTSMRTNVNWE  241
            N+KL R  R  K   S   AFDSPNF PL      +  +  E
Sbjct  147  NDKLHRARRVTKTHTSSLDAFDSPNFGPLGEVDGGQVELYRE  188


>CDD:465490 pfam17763, Asparaginase_C, Glutaminase/Asparaginase C-terminal 
domain.  This domain is found at the C-terminus of asparaginase 
enzymes.
Length=114

 Score = 83.3 bits (207),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 42/66 (64%), Gaps = 5/66 (8%)

Query  262  HVACLRIFPGIKPEMVDAVLKLEGLRGLVLETFGAGNAPHGQDNAMTNVLADAIKRGIVI  321
             V  L ++PG+ PE++DA L   G +G+V+  FGAGN P    +A+ + L +A+ RGI +
Sbjct  1    RVDILYLYPGMDPELLDAALA-AGAKGIVIAGFGAGNVP----SALLDALKEAVARGIPV  55

Query  322  VNVTQC  327
            V  ++C
Sbjct  56   VRSSRC  61



Lambda      K        H        a         alpha
   0.322    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00037601

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459913 pfam00710, Asparaginase, Asparaginase, N-terminal. Thi...  212     4e-69
CDD:465490 pfam17763, Asparaginase_C, Glutaminase/Asparaginase C-...  83.3    2e-20


>CDD:459913 pfam00710, Asparaginase, Asparaginase, N-terminal.  This is the 
N-terminal domain of this enzyme.
Length=188

 Score = 212 bits (542),  Expect = 4e-69, Method: Composition-based stats.
 Identities = 82/222 (37%), Positives = 101/222 (45%), Gaps = 38/222 (17%)

Query  24   VLIIMTGGTICMKQSPSG--FVPARGFQEQCLARVPTFNDGSSSTMMDVVVNAAREIRPH  81
            VLI+ TGGTI  +   SG   VPA   +E  LA VP                   E+   
Sbjct  1    VLILATGGTIASRADSSGGAVVPALTGEEL-LAAVP-------------------ELADI  40

Query  82   PSLRTPQTLYGRRVRYTVFEFEELLDSSSIDAKGWTEIARTIERNYTLFDAFVVLHGTDS  141
              +                E    +DSS++    W  +AR I      +D  VV HGTD+
Sbjct  41   AEIE--------------AEQVANIDSSNMTPADWLRLARRIAEALDDYDGVVVTHGTDT  86

Query  142  LAYTCSALSFMLQNLGKTVVLTGAQAPMLELQNDATDNLLGSLVVAGHF--VIPEVCLYF  199
            L  T SALSFML+NLGK VVLTG+Q P  E  +D   NLL +L VA       P V + F
Sbjct  87   LEETASALSFMLKNLGKPVVLTGSQRPSDEPSSDGPMNLLAALRVAASPAARGPGVLVVF  146

Query  200  NNKLFRGNRSCKVAASDFAAFDSPNFPPLAVTTSMRTNVNWE  241
            N+KL R  R  K   S   AFDSPNF PL      +  +  E
Sbjct  147  NDKLHRARRVTKTHTSSLDAFDSPNFGPLGEVDGGQVELYRE  188


>CDD:465490 pfam17763, Asparaginase_C, Glutaminase/Asparaginase C-terminal 
domain.  This domain is found at the C-terminus of asparaginase 
enzymes.
Length=114

 Score = 83.3 bits (207),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 42/66 (64%), Gaps = 5/66 (8%)

Query  262  HVACLRIFPGIKPEMVDAVLKLEGLRGLVLETFGAGNAPHGQDNAMTNVLADAIKRGIVI  321
             V  L ++PG+ PE++DA L   G +G+V+  FGAGN P    +A+ + L +A+ RGI +
Sbjct  1    RVDILYLYPGMDPELLDAALA-AGAKGIVIAGFGAGNVP----SALLDALKEAVARGIPV  55

Query  322  VNVTQC  327
            V  ++C
Sbjct  56   VRSSRC  61



Lambda      K        H        a         alpha
   0.322    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 394817980


Query= TCONS_00037602

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              76.2    6e-17


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 76.2 bits (188),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 56/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  4    VVIGFVTSWTYCIAMFFGLNDLNKLLSTATGVPILELYYQALQNKAGAIVLETLLLVTGM  63
            V+I  V      IA F  + D +++  ++    +  L +QA+  K GAI++  LL ++ +
Sbjct  227  VIIVGVLYILVNIAFFGVVPD-DEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLL  285

Query  64   GCLIACHTWQSRLAWAFARDRGLPGHKLLAQVNKTLDVPLMAHTVSCFIVAALGLLYLGS  123
            G +       SRL +A ARD  LP  +  A+VNK    P+ A  ++  +   L LL+L S
Sbjct  286  GAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKFG-SPIRAIILTAILSLILLLLFLLS  344

Query  124  STAFNSMVTACITLLYLSYSCPILCLWYRGRNNIKRGPFWLGKWGLAANIVTIAWTVFCL  183
              A+N++++       LSY  PI+ L        KR             I  I +++F +
Sbjct  345  PAAYNALLSLSAYGYLLSYLLPIIGLLI---LRKKRPDLGRIPGRWPVAIFGILFSLFLI  401

Query  184  VMYSFPATMPVTTGS  198
            V   FP   P T  S
Sbjct  402  VALFFPPVGPATGSS  416



Lambda      K        H        a         alpha
   0.330    0.140    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00037605

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              76.2    6e-17


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 76.2 bits (188),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 56/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  4    VVIGFVTSWTYCIAMFFGLNDLNKLLSTATGVPILELYYQALQNKAGAIVLETLLLVTGM  63
            V+I  V      IA F  + D +++  ++    +  L +QA+  K GAI++  LL ++ +
Sbjct  227  VIIVGVLYILVNIAFFGVVPD-DEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLL  285

Query  64   GCLIACHTWQSRLAWAFARDRGLPGHKLLAQVNKTLDVPLMAHTVSCFIVAALGLLYLGS  123
            G +       SRL +A ARD  LP  +  A+VNK    P+ A  ++  +   L LL+L S
Sbjct  286  GAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKFG-SPIRAIILTAILSLILLLLFLLS  344

Query  124  STAFNSMVTACITLLYLSYSCPILCLWYRGRNNIKRGPFWLGKWGLAANIVTIAWTVFCL  183
              A+N++++       LSY  PI+ L        KR             I  I +++F +
Sbjct  345  PAAYNALLSLSAYGYLLSYLLPIIGLLI---LRKKRPDLGRIPGRWPVAIFGILFSLFLI  401

Query  184  VMYSFPATMPVTTGS  198
            V   FP   P T  S
Sbjct  402  VALFFPPVGPATGSS  416



Lambda      K        H        a         alpha
   0.330    0.140    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00037603

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              76.2    6e-17


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 76.2 bits (188),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 56/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  4    VVIGFVTSWTYCIAMFFGLNDLNKLLSTATGVPILELYYQALQNKAGAIVLETLLLVTGM  63
            V+I  V      IA F  + D +++  ++    +  L +QA+  K GAI++  LL ++ +
Sbjct  227  VIIVGVLYILVNIAFFGVVPD-DEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLL  285

Query  64   GCLIACHTWQSRLAWAFARDRGLPGHKLLAQVNKTLDVPLMAHTVSCFIVAALGLLYLGS  123
            G +       SRL +A ARD  LP  +  A+VNK    P+ A  ++  +   L LL+L S
Sbjct  286  GAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKFG-SPIRAIILTAILSLILLLLFLLS  344

Query  124  STAFNSMVTACITLLYLSYSCPILCLWYRGRNNIKRGPFWLGKWGLAANIVTIAWTVFCL  183
              A+N++++       LSY  PI+ L        KR             I  I +++F +
Sbjct  345  PAAYNALLSLSAYGYLLSYLLPIIGLLI---LRKKRPDLGRIPGRWPVAIFGILFSLFLI  401

Query  184  VMYSFPATMPVTTGS  198
            V   FP   P T  S
Sbjct  402  VALFFPPVGPATGSS  416



Lambda      K        H        a         alpha
   0.330    0.140    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00037604

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:404414 pfam13520, AA_permease_2, Amino acid permease              76.2    6e-17


>CDD:404414 pfam13520, AA_permease_2, Amino acid permease.  
Length=427

 Score = 76.2 bits (188),  Expect = 6e-17, Method: Composition-based stats.
 Identities = 56/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  4    VVIGFVTSWTYCIAMFFGLNDLNKLLSTATGVPILELYYQALQNKAGAIVLETLLLVTGM  63
            V+I  V      IA F  + D +++  ++    +  L +QA+  K GAI++  LL ++ +
Sbjct  227  VIIVGVLYILVNIAFFGVVPD-DEIALSSGLGQVAALLFQAVGGKWGAIIVVILLALSLL  285

Query  64   GCLIACHTWQSRLAWAFARDRGLPGHKLLAQVNKTLDVPLMAHTVSCFIVAALGLLYLGS  123
            G +       SRL +A ARD  LP  +  A+VNK    P+ A  ++  +   L LL+L S
Sbjct  286  GAVNTAIVGASRLLYALARDGVLPFSRFFAKVNKFG-SPIRAIILTAILSLILLLLFLLS  344

Query  124  STAFNSMVTACITLLYLSYSCPILCLWYRGRNNIKRGPFWLGKWGLAANIVTIAWTVFCL  183
              A+N++++       LSY  PI+ L        KR             I  I +++F +
Sbjct  345  PAAYNALLSLSAYGYLLSYLLPIIGLLI---LRKKRPDLGRIPGRWPVAIFGILFSLFLI  401

Query  184  VMYSFPATMPVTTGS  198
            V   FP   P T  S
Sbjct  402  VALFFPPVGPATGSS  416



Lambda      K        H        a         alpha
   0.330    0.140    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00043152

Length=85


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.137    0.452    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81172840


Query= TCONS_00043153

Length=100


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.143    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00037608

Length=60


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81359520


Query= TCONS_00037610

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462771 pfam09362, DUF1996, Domain of unknown function (DUF199...  343     8e-118


>CDD:462771 pfam09362, DUF1996, Domain of unknown function (DUF1996).  This 
family of proteins are functionally uncharacterized.
Length=234

 Score = 343 bits (883),  Expect = 8e-118, Method: Composition-based stats.
 Identities = 129/259 (50%), Positives = 155/259 (60%), Gaps = 38/259 (15%)

Query  40   DPLMDPGKPSSHVHAIHGSGGFSMSASGADLKASSCTSCAVTQDKSAYWIPALYFIHENG  99
            DP+++PG+ SSHVH I G   F+ + +   L+ S+CTSC+V +DKS YW P LYF   NG
Sbjct  1    DPIVNPGQVSSHVHQIVGGNAFNATMTYDSLQDSTCTSCSVAEDKSNYWTPTLYFKARNG  60

Query  100  DAEIV---NQVGGLLAYYLLYG---ENVTAFPDNFRMIAGDTYLRDFPWPIPDPPKSEWT  153
              E V    Q GG+  YYLL G   +NVTAFP  FRMIAGD  LR               
Sbjct  61   TFERVPQMRQNGGMTVYYLLRGGGGDNVTAFPPGFRMIAGDPTLR---------------  105

Query  154  GKQGSQEALRQKAIGFNCLNYALDPEPSLGRHFLPNKTYLDEHCTDGVRFELMFPSCWNG  213
                 Q AL Q+AI F CLNY   PE SL  H  P+K      C DG+R E+ FPSCW+G
Sbjct  106  -----QAALAQRAISFRCLNYGGPPEGSLDTHGFPDKN-----CPDGLRAEIHFPSCWDG  155

Query  214  KDVDSDDHKSHVAYPSLVMD---GTCPEGFETRLVSLFYESIWDTYAFKDK----EGYFV  266
            K++DS DHKSHVAYP  ++D   G CP     RL  LFYE IWDT AF D        FV
Sbjct  156  KNLDSPDHKSHVAYPFSLVDESGGPCPASHPVRLPQLFYEIIWDTRAFNDGPEDGSQPFV  215

Query  267  IANGDPTGFGYHGDFMQGW  285
            ++NGDPTG+GYHGDF+ GW
Sbjct  216  LSNGDPTGYGYHGDFINGW  234



Lambda      K        H        a         alpha
   0.316    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 608654532


Query= TCONS_00037611

Length=439


***** No hits found *****



Lambda      K        H        a         alpha
   0.324    0.142    0.456    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 535262696


Query= TCONS_00043155

Length=42


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81176958


Query= TCONS_00037612

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462771 pfam09362, DUF1996, Domain of unknown function (DUF199...  201     8e-64


>CDD:462771 pfam09362, DUF1996, Domain of unknown function (DUF1996).  This 
family of proteins are functionally uncharacterized.
Length=234

 Score = 201 bits (513),  Expect = 8e-64, Method: Composition-based stats.
 Identities = 81/163 (50%), Positives = 94/163 (58%), Gaps = 32/163 (20%)

Query  1    MIAGDTYLRDFPWPIPDPPKSEWTGKQGSQEALRQKAIGFNCLNYALDPEPSLGRHFLPN  60
            MIAGD  LR                    Q AL Q+AI F CLNY   PE SL  H  P+
Sbjct  97   MIAGDPTLR--------------------QAALAQRAISFRCLNYGGPPEGSLDTHGFPD  136

Query  61   KTYLDEHCTDGVRFELMFPSCWNGKDVDSDDHKSHVAYPSLVMD---GTCPEGFETRLVS  117
            K      C DG+R E+ FPSCW+GK++DS DHKSHVAYP  ++D   G CP     RL  
Sbjct  137  KN-----CPDGLRAEIHFPSCWDGKNLDSPDHKSHVAYPFSLVDESGGPCPASHPVRLPQ  191

Query  118  LFYESIWDTYAFKDK----EGYFVIANGDPTGFGYHGDFMQGW  156
            LFYE IWDT AF D        FV++NGDPTG+GYHGDF+ GW
Sbjct  192  LFYEIIWDTRAFNDGPEDGSQPFVLSNGDPTGYGYHGDFINGW  234



Lambda      K        H        a         alpha
   0.314    0.130    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00043156

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462771 pfam09362, DUF1996, Domain of unknown function (DUF199...  201     8e-64


>CDD:462771 pfam09362, DUF1996, Domain of unknown function (DUF1996).  This 
family of proteins are functionally uncharacterized.
Length=234

 Score = 201 bits (513),  Expect = 8e-64, Method: Composition-based stats.
 Identities = 81/163 (50%), Positives = 94/163 (58%), Gaps = 32/163 (20%)

Query  1    MIAGDTYLRDFPWPIPDPPKSEWTGKQGSQEALRQKAIGFNCLNYALDPEPSLGRHFLPN  60
            MIAGD  LR                    Q AL Q+AI F CLNY   PE SL  H  P+
Sbjct  97   MIAGDPTLR--------------------QAALAQRAISFRCLNYGGPPEGSLDTHGFPD  136

Query  61   KTYLDEHCTDGVRFELMFPSCWNGKDVDSDDHKSHVAYPSLVMD---GTCPEGFETRLVS  117
            K      C DG+R E+ FPSCW+GK++DS DHKSHVAYP  ++D   G CP     RL  
Sbjct  137  KN-----CPDGLRAEIHFPSCWDGKNLDSPDHKSHVAYPFSLVDESGGPCPASHPVRLPQ  191

Query  118  LFYESIWDTYAFKDK----EGYFVIANGDPTGFGYHGDFMQGW  156
            LFYE IWDT AF D        FV++NGDPTG+GYHGDF+ GW
Sbjct  192  LFYEIIWDTRAFNDGPEDGSQPFVLSNGDPTGYGYHGDFINGW  234



Lambda      K        H        a         alpha
   0.314    0.130    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 434142480


Query= TCONS_00043157

Length=186
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462771 pfam09362, DUF1996, Domain of unknown function (DUF199...  181     2e-58


>CDD:462771 pfam09362, DUF1996, Domain of unknown function (DUF1996).  This 
family of proteins are functionally uncharacterized.
Length=234

 Score = 181 bits (461),  Expect = 2e-58, Method: Composition-based stats.
 Identities = 71/153 (46%), Positives = 85/153 (56%), Gaps = 26/153 (17%)

Query  40   DPLMDPGKPSSHVHAIHGSGGFSMSASGADLKASSCTSCAVTQDKSAYWIPALYFIHENG  99
            DP+++PG+ SSHVH I G   F+ + +   L+ S+CTSC+V +DKS YW P LYF   NG
Sbjct  1    DPIVNPGQVSSHVHQIVGGNAFNATMTYDSLQDSTCTSCSVAEDKSNYWTPTLYFKARNG  60

Query  100  DAEIV---NQVGGLLAYYLLYG---ENVTAFPDNFRMIAGDTYLRDFPWPIPDPPKSEWT  153
              E V    Q GG+  YYLL G   +NVTAFP  FRMIAGD  LR               
Sbjct  61   TFERVPQMRQNGGMTVYYLLRGGGGDNVTAFPPGFRMIAGDPTLR---------------  105

Query  154  GKQGSQEALRQKAIGFNCLNYALDPEPSLGRHF  186
                 Q AL Q+AI F CLNY   PE SL  H 
Sbjct  106  -----QAALAQRAISFRCLNYGGPPEGSLDTHG  133



Lambda      K        H        a         alpha
   0.321    0.138    0.445    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175844032


Query= TCONS_00037613

Length=156


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.127    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131486384


Query= TCONS_00037615

Length=595


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 751697284


Query= TCONS_00037616

Length=546


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.427    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 688900030


Query= TCONS_00037617

Length=595


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 751697284


Query= TCONS_00043158

Length=343


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.136    0.432    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 401109900


Query= TCONS_00043159

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460111 pfam01205, UPF0029, Uncharacterized protein family UPF...  118     6e-34


>CDD:460111 pfam01205, UPF0029, Uncharacterized protein family UPF0029.  

Length=105

 Score = 118 bits (299),  Expect = 6e-34, Method: Composition-based stats.
 Identities = 43/120 (36%), Positives = 63/120 (53%), Gaps = 18/120 (15%)

Query  198  KKSVFVGRAAHVTSLEQAQGYLDHLLATDKKVAAATHNISAWRIRQQKQANGKGESAEMI  257
            KKS F+  AA V S E+A+ +L+ L    KK   ATHN  A+RI  +             
Sbjct  1    KKSKFIAHAAPVESEEEAKAFLEELKKEHKK---ATHNCYAYRIGGEGG-----------  46

Query  258  VQDCDDDGETA--AGGRLLHLMQLMDVWDVVVVVSRWYGGILLGPDRF-RIINAVGRDAL  314
             +   DDGE    AG  +L +++   + +V+VVV+R++GGI LGP    R  +   R+AL
Sbjct  47   -ERSSDDGEPGGTAGKPILEVLEGNGLTNVLVVVTRYFGGIKLGPGGLVRAYSNAAREAL  105



Lambda      K        H        a         alpha
   0.313    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00037618

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460111 pfam01205, UPF0029, Uncharacterized protein family UPF...  118     6e-34


>CDD:460111 pfam01205, UPF0029, Uncharacterized protein family UPF0029.  

Length=105

 Score = 118 bits (299),  Expect = 6e-34, Method: Composition-based stats.
 Identities = 43/120 (36%), Positives = 63/120 (53%), Gaps = 18/120 (15%)

Query  198  KKSVFVGRAAHVTSLEQAQGYLDHLLATDKKVAAATHNISAWRIRQQKQANGKGESAEMI  257
            KKS F+  AA V S E+A+ +L+ L    KK   ATHN  A+RI  +             
Sbjct  1    KKSKFIAHAAPVESEEEAKAFLEELKKEHKK---ATHNCYAYRIGGEGG-----------  46

Query  258  VQDCDDDGETA--AGGRLLHLMQLMDVWDVVVVVSRWYGGILLGPDRF-RIINAVGRDAL  314
             +   DDGE    AG  +L +++   + +V+VVV+R++GGI LGP    R  +   R+AL
Sbjct  47   -ERSSDDGEPGGTAGKPILEVLEGNGLTNVLVVVTRYFGGIKLGPGGLVRAYSNAAREAL  105



Lambda      K        H        a         alpha
   0.313    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 390099040


Query= TCONS_00037619

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.145    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00037620

Length=418


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00043160

Length=418


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0842    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00043161

Length=418


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00037621

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464157 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C...  120     6e-35
CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 famil...  83.7    7e-20


>CDD:464157 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C-terminal 
domain.  This family is found at the very C-terminal of 60 
ribosomal L4 proteins.
Length=74

 Score = 120 bits (303),  Expect = 6e-35, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 51/72 (71%), Gaps = 2/72 (3%)

Query  238  KDYVLPQNLVANADLARLINSSEIQSVLRAPKGEARTKRAVVQKKNPLRNKQVMLRLNPY  297
            K Y LP+  + N DL R+INS EIQSVLR  KG A+TKR  VQKKNPL+NKQVMLRLNPY
Sbjct  1    KGYNLPRPKMTNTDLTRIINSDEIQSVLRPAKGPAKTKR--VQKKNPLKNKQVMLRLNPY  58

Query  298  AAAFSKEKLGQK  309
            A    +  L  +
Sbjct  59   AKVARRAALLAQ  70


>CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 family.  This 
family includes Ribosomal L4/L1 from eukaryotes and archaebacteria 
and L4 from eubacteria. L4 from yeast has been shown 
to bind rRNA.
Length=190

 Score = 83.7 bits (208),  Expect = 7e-20, Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 78/226 (35%), Gaps = 67/226 (30%)

Query  3    KNKRQPYAVSEKAGEQTSA--ESWGT--GRAVARIPRVSGGGTHRAGQAAFGNQCRSGRM  58
             N+RQ    + K   + S   +      G   AR+  +               Q R G +
Sbjct  26   ANRRQGTHST-KTRSEVSGGGKKPWRQKGTGRARVGSIRS------------PQWRGGGV  72

Query  59   FAPTKVWRKWHQKVNLGQKRFATASALAASSVPSLLFARGHRIANVPEVPLVVESKTFEN  118
                K  R +  K+N   +R          ++ S L A+    A    + +VV+    E 
Sbjct  73   AFGPKP-RDYSYKLNKKVRR---------LALRSALSAK----AAEGLL-VVVDHFELE-  116

Query  119  AAITKTKAAIALLKALGAGADLVKVQKSKKMRAGKGKLRNRRFRQRRGPLVVYNPEVDGK  178
                KTK  + LLK LG G                              L+V + E D +
Sbjct  117  --SPKTKDLVKLLKKLGLGGK--------------------------KVLIVTD-EED-E  146

Query  179  ELVRAFRNIPGVETSSVFSLNLLQLAPGGHLGRFIVWTSAAFEALD  224
             L  + RN+PGV+   V  LN+  L     L    V T +A E L+
Sbjct  147  NLFLSARNLPGVDVVPVNGLNVYDLLKADKL----VITKSAVEKLE  188



Lambda      K        H        a         alpha
   0.316    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 388598792


Query= TCONS_00037622

Length=418


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00037623

Length=418


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.125    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 511049518


Query= TCONS_00043162

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464157 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C...  119     2e-36


>CDD:464157 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C-terminal 
domain.  This family is found at the very C-terminal of 60 
ribosomal L4 proteins.
Length=74

 Score = 119 bits (301),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 51/72 (71%), Gaps = 2/72 (3%)

Query  90   KDYVLPQNLVANADLARLINSSEIQSVLRAPKGEARTKRAVVQKKNPLRNKQVMLRLNPY  149
            K Y LP+  + N DL R+INS EIQSVLR  KG A+TKR  VQKKNPL+NKQVMLRLNPY
Sbjct  1    KGYNLPRPKMTNTDLTRIINSDEIQSVLRPAKGPAKTKR--VQKKNPLKNKQVMLRLNPY  58

Query  150  AAAFSKEKLGQK  161
            A    +  L  +
Sbjct  59   AKVARRAALLAQ  70



Lambda      K        H        a         alpha
   0.317    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00037624

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 famil...  74.4    5e-17


>CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 family.  This 
family includes Ribosomal L4/L1 from eukaryotes and archaebacteria 
and L4 from eubacteria. L4 from yeast has been shown 
to bind rRNA.
Length=190

 Score = 74.4 bits (184),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 47/198 (24%), Positives = 69/198 (35%), Gaps = 62/198 (31%)

Query  13   GRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNLGQKRFATASALA  72
            G   AR+  +               Q R G +    K  R +  K+N   +R        
Sbjct  53   GTGRARVGSIRS------------PQWRGGGVAFGPKP-RDYSYKLNKKVRR--------  91

Query  73   ASSVPSLLFARGHRIANVPEVPLVVESKTFENAAITKTKAAIALLKALGAGADLVKVQKS  132
              ++ S L A+    A    + +VV+    E     KTK  + LLK LG G         
Sbjct  92   -LALRSALSAK----AAEGLL-VVVDHFELE---SPKTKDLVKLLKKLGLGGK-------  135

Query  133  KKMRAGKGKLRNRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSSVFSLNLLQLAPG  192
                                 L+V + E D + L  + RN+PGV+   V  LN+  L   
Sbjct  136  -------------------KVLIVTD-EED-ENLFLSARNLPGVDVVPVNGLNVYDLLKA  174

Query  193  GHLGRFIVWTSAAFEALD  210
              L    V T +A E L+
Sbjct  175  DKL----VITKSAVEKLE  188



Lambda      K        H        a         alpha
   0.320    0.134    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00037625

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464157 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C...  119     2e-36


>CDD:464157 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C-terminal 
domain.  This family is found at the very C-terminal of 60 
ribosomal L4 proteins.
Length=74

 Score = 119 bits (301),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 51/72 (71%), Gaps = 2/72 (3%)

Query  90   KDYVLPQNLVANADLARLINSSEIQSVLRAPKGEARTKRAVVQKKNPLRNKQVMLRLNPY  149
            K Y LP+  + N DL R+INS EIQSVLR  KG A+TKR  VQKKNPL+NKQVMLRLNPY
Sbjct  1    KGYNLPRPKMTNTDLTRIINSDEIQSVLRPAKGPAKTKR--VQKKNPLKNKQVMLRLNPY  58

Query  150  AAAFSKEKLGQK  161
            A    +  L  +
Sbjct  59   AKVARRAALLAQ  70



Lambda      K        H        a         alpha
   0.317    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00037626

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464157 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C...  121     4e-35
CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 famil...  107     2e-28


>CDD:464157 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C-terminal 
domain.  This family is found at the very C-terminal of 60 
ribosomal L4 proteins.
Length=74

 Score = 121 bits (307),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 51/72 (71%), Gaps = 2/72 (3%)

Query  280  KDYVLPQNLVANADLARLINSSEIQSVLRAPKGEARTKRAVVQKKNPLRNKQVMLRLNPY  339
            K Y LP+  + N DL R+INS EIQSVLR  KG A+TKR  VQKKNPL+NKQVMLRLNPY
Sbjct  1    KGYNLPRPKMTNTDLTRIINSDEIQSVLRPAKGPAKTKR--VQKKNPLKNKQVMLRLNPY  58

Query  340  AAAFSKEKLGQK  351
            A    +  L  +
Sbjct  59   AKVARRAALLAQ  70


>CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 family.  This 
family includes Ribosomal L4/L1 from eukaryotes and archaebacteria 
and L4 from eubacteria. L4 from yeast has been shown 
to bind rRNA.
Length=190

 Score = 107 bits (270),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 90/247 (36%), Gaps = 67/247 (27%)

Query  24   PAVFTAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSA--ESWGT--GRAVARIPRVS  79
            PAVF AP+R D++ +       N+RQ    + K   + S   +      G   AR+  + 
Sbjct  5    PAVFGAPVREDLIHRAVVAQLANRRQGTHST-KTRSEVSGGGKKPWRQKGTGRARVGSIR  63

Query  80   GGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNLGQKRFATASALAASSVPSLLFAR  139
                          Q R G +    K  R +  K+N   +R          ++ S L A+
Sbjct  64   ------------SPQWRGGGVAFGPKP-RDYSYKLNKKVRR---------LALRSALSAK  101

Query  140  GHRIANVPEVPLVVESKTFENAAITKTKAAIALLKALGAGADLVKVQKSKKMRAGKGKLR  199
                A    + +VV+    E     KTK  + LLK LG G                    
Sbjct  102  ----AAEGLL-VVVDHFELE---SPKTKDLVKLLKKLGLGGK------------------  135

Query  200  NRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSSVFSLNLLQLAPGGHLGRFIVWTS  259
                      L+V + E D + L  + RN+PGV+   V  LN+  L     L    V T 
Sbjct  136  --------KVLIVTD-EED-ENLFLSARNLPGVDVVPVNGLNVYDLLKADKL----VITK  181

Query  260  AAFEALD  266
            +A E L+
Sbjct  182  SAVEKLE  188



Lambda      K        H        a         alpha
   0.316    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00043163

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464157 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C...  119     2e-36


>CDD:464157 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C-terminal 
domain.  This family is found at the very C-terminal of 60 
ribosomal L4 proteins.
Length=74

 Score = 119 bits (301),  Expect = 2e-36, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 51/72 (71%), Gaps = 2/72 (3%)

Query  90   KDYVLPQNLVANADLARLINSSEIQSVLRAPKGEARTKRAVVQKKNPLRNKQVMLRLNPY  149
            K Y LP+  + N DL R+INS EIQSVLR  KG A+TKR  VQKKNPL+NKQVMLRLNPY
Sbjct  1    KGYNLPRPKMTNTDLTRIINSDEIQSVLRPAKGPAKTKR--VQKKNPLKNKQVMLRLNPY  58

Query  150  AAAFSKEKLGQK  161
            A    +  L  +
Sbjct  59   AKVARRAALLAQ  70



Lambda      K        H        a         alpha
   0.317    0.132    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170771608


Query= TCONS_00043164

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 famil...  66.4    7e-15


>CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 family.  This 
family includes Ribosomal L4/L1 from eukaryotes and archaebacteria 
and L4 from eubacteria. L4 from yeast has been shown 
to bind rRNA.
Length=190

 Score = 66.4 bits (163),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 24/101 (24%), Positives = 38/101 (38%), Gaps = 18/101 (18%)

Query  24   PAVFTAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSA--ESWGT--GRAVARIPRVS  79
            PAVF AP+R D++ +       N+RQ    + K   + S   +      G   AR+  + 
Sbjct  5    PAVFGAPVREDLIHRAVVAQLANRRQGTHST-KTRSEVSGGGKKPWRQKGTGRARVGSIR  63

Query  80   GGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNLGQKR  120
                          Q R G +    K  R +  K+N   +R
Sbjct  64   ------------SPQWRGGGVAFGPKP-RDYSYKLNKKVRR  91



Lambda      K        H        a         alpha
   0.314    0.126    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00043165

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 famil...  78.3    9e-19


>CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 family.  This 
family includes Ribosomal L4/L1 from eukaryotes and archaebacteria 
and L4 from eubacteria. L4 from yeast has been shown 
to bind rRNA.
Length=190

 Score = 78.3 bits (194),  Expect = 9e-19, Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 35/160 (22%)

Query  24   PAVFTAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSA--ESWGT--GRAVARIPRVS  79
            PAVF AP+R D++ +       N+RQ    + K   + S   +      G   AR+  + 
Sbjct  5    PAVFGAPVREDLIHRAVVAQLANRRQGTHST-KTRSEVSGGGKKPWRQKGTGRARVGSIR  63

Query  80   GGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNLGQKRFATASALAASSVPSLLFAR  139
                          Q R G +    K  R +  K+N   +R          ++ S L A+
Sbjct  64   ------------SPQWRGGGVAFGPKP-RDYSYKLNKKVRR---------LALRSALSAK  101

Query  140  GHRIANVPEVPLVVESKTFENAAITKTKAAIALLKALGAG  179
                A    + +VV+    E     KTK  + LLK LG G
Sbjct  102  ----AAEGLL-VVVDHFELE---SPKTKDLVKLLKKLGLG  133



Lambda      K        H        a         alpha
   0.317    0.127    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00043166

Length=206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 famil...  77.9    1e-18


>CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 family.  This 
family includes Ribosomal L4/L1 from eukaryotes and archaebacteria 
and L4 from eubacteria. L4 from yeast has been shown 
to bind rRNA.
Length=190

 Score = 77.9 bits (193),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 35/160 (22%)

Query  24   PAVFTAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSA--ESWGT--GRAVARIPRVS  79
            PAVF AP+R D++ +       N+RQ    + K   + S   +      G   AR+  + 
Sbjct  5    PAVFGAPVREDLIHRAVVAQLANRRQGTHST-KTRSEVSGGGKKPWRQKGTGRARVGSIR  63

Query  80   GGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNLGQKRFATASALAASSVPSLLFAR  139
                          Q R G +    K  R +  K+N   +R          ++ S L A+
Sbjct  64   ------------SPQWRGGGVAFGPKP-RDYSYKLNKKVRR---------LALRSALSAK  101

Query  140  GHRIANVPEVPLVVESKTFENAAITKTKAAIALLKALGAG  179
                A    + +VV+    E     KTK  + LLK LG G
Sbjct  102  ----AAEGLL-VVVDHFELE---SPKTKDLVKLLKKLGLG  133



Lambda      K        H        a         alpha
   0.317    0.128    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 205553910


Query= TCONS_00043167

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464157 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C...  121     4e-35
CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 famil...  107     2e-28


>CDD:464157 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C-terminal 
domain.  This family is found at the very C-terminal of 60 
ribosomal L4 proteins.
Length=74

 Score = 121 bits (307),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 51/72 (71%), Gaps = 2/72 (3%)

Query  280  KDYVLPQNLVANADLARLINSSEIQSVLRAPKGEARTKRAVVQKKNPLRNKQVMLRLNPY  339
            K Y LP+  + N DL R+INS EIQSVLR  KG A+TKR  VQKKNPL+NKQVMLRLNPY
Sbjct  1    KGYNLPRPKMTNTDLTRIINSDEIQSVLRPAKGPAKTKR--VQKKNPLKNKQVMLRLNPY  58

Query  340  AAAFSKEKLGQK  351
            A    +  L  +
Sbjct  59   AKVARRAALLAQ  70


>CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 family.  This 
family includes Ribosomal L4/L1 from eukaryotes and archaebacteria 
and L4 from eubacteria. L4 from yeast has been shown 
to bind rRNA.
Length=190

 Score = 107 bits (270),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 90/247 (36%), Gaps = 67/247 (27%)

Query  24   PAVFTAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSA--ESWGT--GRAVARIPRVS  79
            PAVF AP+R D++ +       N+RQ    + K   + S   +      G   AR+  + 
Sbjct  5    PAVFGAPVREDLIHRAVVAQLANRRQGTHST-KTRSEVSGGGKKPWRQKGTGRARVGSIR  63

Query  80   GGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNLGQKRFATASALAASSVPSLLFAR  139
                          Q R G +    K  R +  K+N   +R          ++ S L A+
Sbjct  64   ------------SPQWRGGGVAFGPKP-RDYSYKLNKKVRR---------LALRSALSAK  101

Query  140  GHRIANVPEVPLVVESKTFENAAITKTKAAIALLKALGAGADLVKVQKSKKMRAGKGKLR  199
                A    + +VV+    E     KTK  + LLK LG G                    
Sbjct  102  ----AAEGLL-VVVDHFELE---SPKTKDLVKLLKKLGLGGK------------------  135

Query  200  NRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSSVFSLNLLQLAPGGHLGRFIVWTS  259
                      L+V + E D + L  + RN+PGV+   V  LN+  L     L    V T 
Sbjct  136  --------KVLIVTD-EED-ENLFLSARNLPGVDVVPVNGLNVYDLLKADKL----VITK  181

Query  260  AAFEALD  266
            +A E L+
Sbjct  182  SAVEKLE  188



Lambda      K        H        a         alpha
   0.316    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00043168

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464157 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C...  121     4e-35
CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 famil...  107     2e-28


>CDD:464157 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C-terminal 
domain.  This family is found at the very C-terminal of 60 
ribosomal L4 proteins.
Length=74

 Score = 121 bits (307),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 51/72 (71%), Gaps = 2/72 (3%)

Query  280  KDYVLPQNLVANADLARLINSSEIQSVLRAPKGEARTKRAVVQKKNPLRNKQVMLRLNPY  339
            K Y LP+  + N DL R+INS EIQSVLR  KG A+TKR  VQKKNPL+NKQVMLRLNPY
Sbjct  1    KGYNLPRPKMTNTDLTRIINSDEIQSVLRPAKGPAKTKR--VQKKNPLKNKQVMLRLNPY  58

Query  340  AAAFSKEKLGQK  351
            A    +  L  +
Sbjct  59   AKVARRAALLAQ  70


>CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 family.  This 
family includes Ribosomal L4/L1 from eukaryotes and archaebacteria 
and L4 from eubacteria. L4 from yeast has been shown 
to bind rRNA.
Length=190

 Score = 107 bits (270),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 90/247 (36%), Gaps = 67/247 (27%)

Query  24   PAVFTAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSA--ESWGT--GRAVARIPRVS  79
            PAVF AP+R D++ +       N+RQ    + K   + S   +      G   AR+  + 
Sbjct  5    PAVFGAPVREDLIHRAVVAQLANRRQGTHST-KTRSEVSGGGKKPWRQKGTGRARVGSIR  63

Query  80   GGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNLGQKRFATASALAASSVPSLLFAR  139
                          Q R G +    K  R +  K+N   +R          ++ S L A+
Sbjct  64   ------------SPQWRGGGVAFGPKP-RDYSYKLNKKVRR---------LALRSALSAK  101

Query  140  GHRIANVPEVPLVVESKTFENAAITKTKAAIALLKALGAGADLVKVQKSKKMRAGKGKLR  199
                A    + +VV+    E     KTK  + LLK LG G                    
Sbjct  102  ----AAEGLL-VVVDHFELE---SPKTKDLVKLLKKLGLGGK------------------  135

Query  200  NRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSSVFSLNLLQLAPGGHLGRFIVWTS  259
                      L+V + E D + L  + RN+PGV+   V  LN+  L     L    V T 
Sbjct  136  --------KVLIVTD-EED-ENLFLSARNLPGVDVVPVNGLNVYDLLKADKL----VITK  181

Query  260  AAFEALD  266
            +A E L+
Sbjct  182  SAVEKLE  188



Lambda      K        H        a         alpha
   0.316    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00037627

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464157 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C...  121     4e-35
CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 famil...  107     2e-28


>CDD:464157 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C-terminal 
domain.  This family is found at the very C-terminal of 60 
ribosomal L4 proteins.
Length=74

 Score = 121 bits (307),  Expect = 4e-35, Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 51/72 (71%), Gaps = 2/72 (3%)

Query  280  KDYVLPQNLVANADLARLINSSEIQSVLRAPKGEARTKRAVVQKKNPLRNKQVMLRLNPY  339
            K Y LP+  + N DL R+INS EIQSVLR  KG A+TKR  VQKKNPL+NKQVMLRLNPY
Sbjct  1    KGYNLPRPKMTNTDLTRIINSDEIQSVLRPAKGPAKTKR--VQKKNPLKNKQVMLRLNPY  58

Query  340  AAAFSKEKLGQK  351
            A    +  L  +
Sbjct  59   AKVARRAALLAQ  70


>CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 family.  This 
family includes Ribosomal L4/L1 from eukaryotes and archaebacteria 
and L4 from eubacteria. L4 from yeast has been shown 
to bind rRNA.
Length=190

 Score = 107 bits (270),  Expect = 2e-28, Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 90/247 (36%), Gaps = 67/247 (27%)

Query  24   PAVFTAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSA--ESWGT--GRAVARIPRVS  79
            PAVF AP+R D++ +       N+RQ    + K   + S   +      G   AR+  + 
Sbjct  5    PAVFGAPVREDLIHRAVVAQLANRRQGTHST-KTRSEVSGGGKKPWRQKGTGRARVGSIR  63

Query  80   GGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNLGQKRFATASALAASSVPSLLFAR  139
                          Q R G +    K  R +  K+N   +R          ++ S L A+
Sbjct  64   ------------SPQWRGGGVAFGPKP-RDYSYKLNKKVRR---------LALRSALSAK  101

Query  140  GHRIANVPEVPLVVESKTFENAAITKTKAAIALLKALGAGADLVKVQKSKKMRAGKGKLR  199
                A    + +VV+    E     KTK  + LLK LG G                    
Sbjct  102  ----AAEGLL-VVVDHFELE---SPKTKDLVKLLKKLGLGGK------------------  135

Query  200  NRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSSVFSLNLLQLAPGGHLGRFIVWTS  259
                      L+V + E D + L  + RN+PGV+   V  LN+  L     L    V T 
Sbjct  136  --------KVLIVTD-EED-ENLFLSARNLPGVDVVPVNGLNVYDLLKADKL----VITK  181

Query  260  AAFEALD  266
            +A E L+
Sbjct  182  SAVEKLE  188



Lambda      K        H        a         alpha
   0.316    0.130    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00037628

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 famil...  66.0    7e-15


>CDD:425758 pfam00573, Ribosomal_L4, Ribosomal protein L4/L1 family.  This 
family includes Ribosomal L4/L1 from eukaryotes and archaebacteria 
and L4 from eubacteria. L4 from yeast has been shown 
to bind rRNA.
Length=190

 Score = 66.0 bits (162),  Expect = 7e-15, Method: Composition-based stats.
 Identities = 23/96 (24%), Positives = 36/96 (38%), Gaps = 18/96 (19%)

Query  24   PAVFTAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSA--ESWGT--GRAVARIPRVS  79
            PAVF AP+R D++ +       N+RQ    + K   + S   +      G   AR+  + 
Sbjct  5    PAVFGAPVREDLIHRAVVAQLANRRQGTHST-KTRSEVSGGGKKPWRQKGTGRARVGSIR  63

Query  80   GGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVN  115
                          Q R G +    K  R +  K+N
Sbjct  64   ------------SPQWRGGGVAFGPKP-RDYSYKLN  86



Lambda      K        H        a         alpha
   0.316    0.127    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00037629

Length=90


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.132    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80664192


Query= TCONS_00037630

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00043169

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.131    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00043170

Length=134


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.130    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 99084160


Query= TCONS_00043171

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00037633

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00037634

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00037635

Length=71


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.129    0.376    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81127744


Query= TCONS_00043172

Length=80


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.132    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81524384


Query= TCONS_00037636

Length=974
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  66.4    3e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 66.4 bits (162),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 45/229 (20%), Positives = 79/229 (34%), Gaps = 22/229 (10%)

Query  479  VENYFTYVNDSLYYIFPRRRFLLWLRSC--HAKSLEDKMLLYSMMTLGAIFSDRPDRLAA  536
            ++ +F   +   + I  R  FL           +    +LL +++ LGA+FS+ P   ++
Sbjct  1    LDLFFKNFH-PQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSS  59

Query  537  MKRASRTARYAVEHSRHNL-----------SLQLAQSRIIMSLWYYAIGALEKSWDALGA  585
                   A       R  +           SL + Q+ +++ L+    G  +  W   G 
Sbjct  60   SSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGL  119

Query  586  AVRTVCGLRYNVELGGVIVDRDRVCEYGLHPQALIECRRRTFWVAFLMDRLSCFYSSTSA  645
            A+R    L  + +   V                  E RRR FW  F +DRL         
Sbjct  120  AIRLARSLGLHRDPSYVSPSWK-------LWIEEAELRRRLFWACFYLDRLISLILGRPP  172

Query  646  FIPSQTAYLRMPCREE-VFEAQQYTTVPYFQSFLNQPPTSTDHELSELS  693
             +      L +PC ++ ++E+     V      L          L +LS
Sbjct  173  LLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLS  221



Lambda      K        H        a         alpha
   0.318    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1243139128


Query= TCONS_00037637

Length=974
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  66.4    3e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 66.4 bits (162),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 45/229 (20%), Positives = 79/229 (34%), Gaps = 22/229 (10%)

Query  479  VENYFTYVNDSLYYIFPRRRFLLWLRSC--HAKSLEDKMLLYSMMTLGAIFSDRPDRLAA  536
            ++ +F   +   + I  R  FL           +    +LL +++ LGA+FS+ P   ++
Sbjct  1    LDLFFKNFH-PQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSS  59

Query  537  MKRASRTARYAVEHSRHNL-----------SLQLAQSRIIMSLWYYAIGALEKSWDALGA  585
                   A       R  +           SL + Q+ +++ L+    G  +  W   G 
Sbjct  60   SSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGL  119

Query  586  AVRTVCGLRYNVELGGVIVDRDRVCEYGLHPQALIECRRRTFWVAFLMDRLSCFYSSTSA  645
            A+R    L  + +   V                  E RRR FW  F +DRL         
Sbjct  120  AIRLARSLGLHRDPSYVSPSWK-------LWIEEAELRRRLFWACFYLDRLISLILGRPP  172

Query  646  FIPSQTAYLRMPCREE-VFEAQQYTTVPYFQSFLNQPPTSTDHELSELS  693
             +      L +PC ++ ++E+     V      L          L +LS
Sbjct  173  LLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLS  221



Lambda      K        H        a         alpha
   0.318    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1243139128


Query= TCONS_00037638

Length=657
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  62.1    3e-11


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 62.1 bits (151),  Expect = 3e-11, Method: Composition-based stats.
 Identities = 45/229 (20%), Positives = 79/229 (34%), Gaps = 22/229 (10%)

Query  162  VENYFTYVNDSLYYIFPRRRFLLWLRSC--HAKSLEDKMLLYSMMTLGAIFSDRPDRLAA  219
            ++ +F   +   + I  R  FL           +    +LL +++ LGA+FS+ P   ++
Sbjct  1    LDLFFKNFH-PQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSS  59

Query  220  MKRASRTARYAVEHSRHNL-----------SLQLAQSRIIMSLWYYAIGALEKSWDALGA  268
                   A       R  +           SL + Q+ +++ L+    G  +  W   G 
Sbjct  60   SSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGL  119

Query  269  AVRTVCGLRYNVELGGVIVDRDRVCEYGLHPQALIECRRRTFWVAFLMDRLSCFYSSTSA  328
            A+R    L  + +   V                  E RRR FW  F +DRL         
Sbjct  120  AIRLARSLGLHRDPSYVSPSWK-------LWIEEAELRRRLFWACFYLDRLISLILGRPP  172

Query  329  FIPSQTAYLRMPCREE-VFEAQQYTTVPYFQSFLNQPPTSTDHELSELS  376
             +      L +PC ++ ++E+     V      L          L +LS
Sbjct  173  LLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLS  221



Lambda      K        H        a         alpha
   0.321    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 831781560


Query= TCONS_00037639

Length=109


***** No hits found *****



Lambda      K        H        a         alpha
   0.311    0.130    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80595340


Query= TCONS_00037640

Length=974
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  66.4    3e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 66.4 bits (162),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 45/229 (20%), Positives = 79/229 (34%), Gaps = 22/229 (10%)

Query  479  VENYFTYVNDSLYYIFPRRRFLLWLRSC--HAKSLEDKMLLYSMMTLGAIFSDRPDRLAA  536
            ++ +F   +   + I  R  FL           +    +LL +++ LGA+FS+ P   ++
Sbjct  1    LDLFFKNFH-PQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSS  59

Query  537  MKRASRTARYAVEHSRHNL-----------SLQLAQSRIIMSLWYYAIGALEKSWDALGA  585
                   A       R  +           SL + Q+ +++ L+    G  +  W   G 
Sbjct  60   SSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGL  119

Query  586  AVRTVCGLRYNVELGGVIVDRDRVCEYGLHPQALIECRRRTFWVAFLMDRLSCFYSSTSA  645
            A+R    L  + +   V                  E RRR FW  F +DRL         
Sbjct  120  AIRLARSLGLHRDPSYVSPSWK-------LWIEEAELRRRLFWACFYLDRLISLILGRPP  172

Query  646  FIPSQTAYLRMPCREE-VFEAQQYTTVPYFQSFLNQPPTSTDHELSELS  693
             +      L +PC ++ ++E+     V      L          L +LS
Sbjct  173  LLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLS  221



Lambda      K        H        a         alpha
   0.318    0.131    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1243139128


Query= TCONS_00037641

Length=952
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription...  66.0    3e-12


>CDD:397964 pfam04082, Fungal_trans, Fungal specific transcription factor 
domain.  
Length=262

 Score = 66.0 bits (161),  Expect = 3e-12, Method: Composition-based stats.
 Identities = 45/229 (20%), Positives = 79/229 (34%), Gaps = 22/229 (10%)

Query  457  VENYFTYVNDSLYYIFPRRRFLLWLRSC--HAKSLEDKMLLYSMMTLGAIFSDRPDRLAA  514
            ++ +F   +   + I  R  FL           +    +LL +++ LGA+FS+ P   ++
Sbjct  1    LDLFFKNFH-PQFPILHRPSFLRDYFELFSSPSNYASPLLLLAILALGALFSESPTARSS  59

Query  515  MKRASRTARYAVEHSRHNL-----------SLQLAQSRIIMSLWYYAIGALEKSWDALGA  563
                   A       R  +           SL + Q+ +++ L+    G  +  W   G 
Sbjct  60   SSLTDEAADGIHFFLRALILIHEDFSSPSSSLWILQALLLLELYELGTGDRKLHWRYHGL  119

Query  564  AVRTVCGLRYNVELGGVIVDRDRVCEYGLHPQALIECRRRTFWVAFLMDRLSCFYSSTSA  623
            A+R    L  + +   V                  E RRR FW  F +DRL         
Sbjct  120  AIRLARSLGLHRDPSYVSPSWK-------LWIEEAELRRRLFWACFYLDRLISLILGRPP  172

Query  624  FIPSQTAYLRMPCREE-VFEAQQYTTVPYFQSFLNQPPTSTDHELSELS  671
             +      L +PC ++ ++E+     V      L          L +LS
Sbjct  173  LLSDSDIDLPLPCDDDDLWESDSADEVTLPLISLESKSIKPPLFLIKLS  221



Lambda      K        H        a         alpha
   0.318    0.132    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1211989856


Query= TCONS_00037642

Length=319


***** No hits found *****



Lambda      K        H        a         alpha
   0.322    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0745    0.140     1.90     42.6     43.6 

Effective search space used: 369487376


Query= TCONS_00037643

Length=311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  84.8    8e-22


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 84.8 bits (211),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 4/67 (6%)

Query  54   DYYALLGLRRTPTPSDAEIRSAYRNLTLSFHPDKQPAELREAAERHFARIQEAYETLLDP  113
            DYY +LG+  +P  SD EI+ AYR L L +HPDK P +    AE  F  I EAYE L DP
Sbjct  1    DYYEILGV--SPDASDEEIKKAYRKLALKYHPDKNPGD--PEAEEKFKEINEAYEVLSDP  56

Query  114  KKRVVYD  120
            +KR +YD
Sbjct  57   EKRAIYD  63



Lambda      K        H        a         alpha
   0.313    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 356746432


Query= TCONS_00037644

Length=755
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463378 pfam11875, DUF3395, Domain of unknown function (DUF339...  118     8e-32
CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  86.8    1e-21


>CDD:463378 pfam11875, DUF3395, Domain of unknown function (DUF3395).  This 
domain is functionally uncharacterized. This domain is found 
in eukaryotes. This presumed domain is typically between 
147 to 176 amino acids in length. This domain is found associated 
with pfam00226.
Length=144

 Score = 118 bits (299),  Expect = 8e-32, Method: Composition-based stats.
 Identities = 40/96 (42%), Positives = 58/96 (60%), Gaps = 3/96 (3%)

Query  659  HKQLKRLIPKKRAESQQAIELMAEHVHRRQAREEKEGGLVITKAEYGHYPSPKRWTTDSG  718
             ++ K  I +KR E++ AIELM E   R++A EE++GGLVITKA YG+ P+     +D  
Sbjct  15   REKNKERIAEKRREAEAAIELMKETAERKRAAEEEKGGLVITKALYGNLPAFPDEESDDD  74

Query  719  DAAKALEVADVTVPVAALVDHGQLVISKDTVKVGII  754
                  EV DVT+P+ ALV   QL++ +   K G+ 
Sbjct  75   LEP---EVIDVTIPLQALVKDSQLILPEGVSKSGLP  107


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 86.8 bits (216),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 4/67 (6%)

Query  54   DYYALLGLRRTPTPSDAEIRSAYRNLTLSFHPDKQPAELREAAERHFARIQEAYETLLDP  113
            DYY +LG+  +P  SD EI+ AYR L L +HPDK P +    AE  F  I EAYE L DP
Sbjct  1    DYYEILGV--SPDASDEEIKKAYRKLALKYHPDKNPGD--PEAEEKFKEINEAYEVLSDP  56

Query  114  KKRVVYD  120
            +KR +YD
Sbjct  57   EKRAIYD  63



Lambda      K        H        a         alpha
   0.315    0.131    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 961855472


Query= TCONS_00037645

Length=798
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463378 pfam11875, DUF3395, Domain of unknown function (DUF339...  188     1e-56
CDD:395170 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains)...  86.8    1e-21


>CDD:463378 pfam11875, DUF3395, Domain of unknown function (DUF3395).  This 
domain is functionally uncharacterized. This domain is found 
in eukaryotes. This presumed domain is typically between 
147 to 176 amino acids in length. This domain is found associated 
with pfam00226.
Length=144

 Score = 188 bits (480),  Expect = 1e-56, Method: Composition-based stats.
 Identities = 58/133 (44%), Positives = 82/133 (62%), Gaps = 3/133 (2%)

Query  659  HKQLKRLIPKKRAESQQAIELMAEHVHRRQAREEKEGGLVITKAEYGHYPSPKRWTTDSG  718
             ++ K  I +KR E++ AIELM E   R++A EE++GGLVITKA YG+ P+     +D  
Sbjct  15   REKNKERIAEKRREAEAAIELMKETAERKRAAEEEKGGLVITKALYGNLPAFPDEESDDD  74

Query  719  DAAKALEVADVTVPVAALVDHGQLVISKDTVKFQILGFYDPAPLLPKKLKIWYTYRGNEH  778
                  EV DVT+P+ ALV   QL++ +   K  + GFYDP P  PK L++ YT+RG  H
Sbjct  75   LEP---EVIDVTIPLQALVKDSQLILPEGVSKSGLPGFYDPCPGEPKSLRVRYTFRGQLH  131

Query  779  FVEANDSEGIACP  791
             VE +D+E +  P
Sbjct  132  EVEVDDNEELRLP  144


>CDD:395170 pfam00226, DnaJ, DnaJ domain.  DnaJ domains (J-domains) are associated 
with hsp70 heat-shock system and it is thought that 
this domain mediates the interaction. DnaJ-domain is therefore 
part of a chaperone (protein folding) system. The T-antigens, 
although not in Prosite are confirmed as DnaJ containing 
domains from literature.
Length=63

 Score = 86.8 bits (216),  Expect = 1e-21, Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 4/67 (6%)

Query  54   DYYALLGLRRTPTPSDAEIRSAYRNLTLSFHPDKQPAELREAAERHFARIQEAYETLLDP  113
            DYY +LG+  +P  SD EI+ AYR L L +HPDK P +    AE  F  I EAYE L DP
Sbjct  1    DYYEILGV--SPDASDEEIKKAYRKLALKYHPDKNPGD--PEAEEKFKEINEAYEVLSDP  56

Query  114  KKRVVYD  120
            +KR +YD
Sbjct  57   EKRAIYD  63



Lambda      K        H        a         alpha
   0.316    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1024427008


Query= TCONS_00037646

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463378 pfam11875, DUF3395, Domain of unknown function (DUF339...  189     1e-58


>CDD:463378 pfam11875, DUF3395, Domain of unknown function (DUF3395).  This 
domain is functionally uncharacterized. This domain is found 
in eukaryotes. This presumed domain is typically between 
147 to 176 amino acids in length. This domain is found associated 
with pfam00226.
Length=144

 Score = 189 bits (482),  Expect = 1e-58, Method: Composition-based stats.
 Identities = 58/133 (44%), Positives = 82/133 (62%), Gaps = 3/133 (2%)

Query  384  HKQLKRLIPKKRAESQQAIELMAEHVHRRQAREEKEGGLVITKAEYGHYPSPKRWTTDSG  443
             ++ K  I +KR E++ AIELM E   R++A EE++GGLVITKA YG+ P+     +D  
Sbjct  15   REKNKERIAEKRREAEAAIELMKETAERKRAAEEEKGGLVITKALYGNLPAFPDEESDDD  74

Query  444  DAAKALEVADVTVPVAALVDHGQLVISKDTVKFQILGFYDPAPLLPKKLKIWYTYRGNEH  503
                  EV DVT+P+ ALV   QL++ +   K  + GFYDP P  PK L++ YT+RG  H
Sbjct  75   LEP---EVIDVTIPLQALVKDSQLILPEGVSKSGLPGFYDPCPGEPKSLRVRYTFRGQLH  131

Query  504  FVEANDSEGIACP  516
             VE +D+E +  P
Sbjct  132  EVEVDDNEELRLP  144



Lambda      K        H        a         alpha
   0.318    0.132    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 654076512


Query= TCONS_00037647

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460666 pfam02731, SKIP_SNW, SKIP/SNW domain. This domain is f...  241     4e-78


>CDD:460666 pfam02731, SKIP_SNW, SKIP/SNW domain.  This domain is found in 
chromatin proteins.
Length=152

 Score = 241 bits (618),  Expect = 4e-78, Method: Composition-based stats.
 Identities = 113/155 (73%), Positives = 134/155 (86%), Gaps = 3/155 (2%)

Query  194  RYTPANQMGDTTRKNDRIMKIVERQQDPMEPPKFKHKKIPRGPPSPPPPIMHSPPRKLTA  253
            RYTP+ Q    +    RI+K+VE Q DP+EPPKFKHKK+PRGPPSPPPP++HSPPRKLT 
Sbjct  1    RYTPSQQ---NSGAKQRIIKMVEAQVDPLEPPKFKHKKVPRGPPSPPPPVLHSPPRKLTK  57

Query  254  EDQEAWRIPPPVSNWKNPKGYTVPLDKRLAADGRGLQDVTINDKFAQFAEALFTADRHAR  313
            E+Q+ W+IPP +SNWKNPKGYT+PLDKRLAADGRGLQDV INDKFA+ +EAL+ A+R AR
Sbjct  58   EEQQEWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVEINDKFAKLSEALYIAERKAR  117

Query  314  EEVRLRAQMQQKLAEKEKAQKEEHLRALAQKAREE  348
            EEV+LRA+MQ+KLAEKEK +KEE LR LAQKAREE
Sbjct  118  EEVKLRAEMQKKLAEKEKEEKEEKLRELAQKAREE  152



Lambda      K        H        a         alpha
   0.313    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 727786436


Query= TCONS_00037648

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460666 pfam02731, SKIP_SNW, SKIP/SNW domain. This domain is f...  241     5e-78


>CDD:460666 pfam02731, SKIP_SNW, SKIP/SNW domain.  This domain is found in 
chromatin proteins.
Length=152

 Score = 241 bits (617),  Expect = 5e-78, Method: Composition-based stats.
 Identities = 113/155 (73%), Positives = 134/155 (86%), Gaps = 3/155 (2%)

Query  194  RYTPANQMGDTTRKNDRIMKIVERQQDPMEPPKFKHKKIPRGPPSPPPPIMHSPPRKLTA  253
            RYTP+ Q    +    RI+K+VE Q DP+EPPKFKHKK+PRGPPSPPPP++HSPPRKLT 
Sbjct  1    RYTPSQQ---NSGAKQRIIKMVEAQVDPLEPPKFKHKKVPRGPPSPPPPVLHSPPRKLTK  57

Query  254  EDQEAWRIPPPVSNWKNPKGYTVPLDKRLAADGRGLQDVTINDKFAQFAEALFTADRHAR  313
            E+Q+ W+IPP +SNWKNPKGYT+PLDKRLAADGRGLQDV INDKFA+ +EAL+ A+R AR
Sbjct  58   EEQQEWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVEINDKFAKLSEALYIAERKAR  117

Query  314  EEVRLRAQMQQKLAEKEKAQKEEHLRALAQKAREE  348
            EEV+LRA+MQ+KLAEKEK +KEE LR LAQKAREE
Sbjct  118  EEVKLRAEMQKKLAEKEKEEKEEKLRELAQKAREE  152



Lambda      K        H        a         alpha
   0.313    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 727786436


Query= TCONS_00037649

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460666 pfam02731, SKIP_SNW, SKIP/SNW domain. This domain is f...  241     5e-78


>CDD:460666 pfam02731, SKIP_SNW, SKIP/SNW domain.  This domain is found in 
chromatin proteins.
Length=152

 Score = 241 bits (617),  Expect = 5e-78, Method: Composition-based stats.
 Identities = 113/155 (73%), Positives = 134/155 (86%), Gaps = 3/155 (2%)

Query  194  RYTPANQMGDTTRKNDRIMKIVERQQDPMEPPKFKHKKIPRGPPSPPPPIMHSPPRKLTA  253
            RYTP+ Q    +    RI+K+VE Q DP+EPPKFKHKK+PRGPPSPPPP++HSPPRKLT 
Sbjct  1    RYTPSQQ---NSGAKQRIIKMVEAQVDPLEPPKFKHKKVPRGPPSPPPPVLHSPPRKLTK  57

Query  254  EDQEAWRIPPPVSNWKNPKGYTVPLDKRLAADGRGLQDVTINDKFAQFAEALFTADRHAR  313
            E+Q+ W+IPP +SNWKNPKGYT+PLDKRLAADGRGLQDV INDKFA+ +EAL+ A+R AR
Sbjct  58   EEQQEWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVEINDKFAKLSEALYIAERKAR  117

Query  314  EEVRLRAQMQQKLAEKEKAQKEEHLRALAQKAREE  348
            EEV+LRA+MQ+KLAEKEK +KEE LR LAQKAREE
Sbjct  118  EEVKLRAEMQKKLAEKEKEEKEEKLRELAQKAREE  152



Lambda      K        H        a         alpha
   0.313    0.130    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 727786436


Query= TCONS_00037650

Length=467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460666 pfam02731, SKIP_SNW, SKIP/SNW domain. This domain is f...  236     2e-77


>CDD:460666 pfam02731, SKIP_SNW, SKIP/SNW domain.  This domain is found in 
chromatin proteins.
Length=152

 Score = 236 bits (605),  Expect = 2e-77, Method: Composition-based stats.
 Identities = 113/155 (73%), Positives = 134/155 (86%), Gaps = 3/155 (2%)

Query  107  RYTPANQMGDTTRKNDRIMKIVERQQDPMEPPKFKHKKIPRGPPSPPPPIMHSPPRKLTA  166
            RYTP+ Q    +    RI+K+VE Q DP+EPPKFKHKK+PRGPPSPPPP++HSPPRKLT 
Sbjct  1    RYTPSQQ---NSGAKQRIIKMVEAQVDPLEPPKFKHKKVPRGPPSPPPPVLHSPPRKLTK  57

Query  167  EDQEAWRIPPPVSNWKNPKGYTVPLDKRLAADGRGLQDVTINDKFAQFAEALFTADRHAR  226
            E+Q+ W+IPP +SNWKNPKGYT+PLDKRLAADGRGLQDV INDKFA+ +EAL+ A+R AR
Sbjct  58   EEQQEWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVEINDKFAKLSEALYIAERKAR  117

Query  227  EEVRLRAQMQQKLAEKEKAQKEEHLRALAQKAREE  261
            EEV+LRA+MQ+KLAEKEK +KEE LR LAQKAREE
Sbjct  118  EEVKLRAEMQKKLAEKEKEEKEEKLRELAQKAREE  152



Lambda      K        H        a         alpha
   0.313    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 578206408


Query= TCONS_00043174

Length=73


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.130    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83014932


Query= TCONS_00043175

Length=110


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.132    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00037652

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00037651

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00043176

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433519 pfam13840, ACT_7, ACT domain. The ACT domain is a stru...  76.8    4e-19


>CDD:433519 pfam13840, ACT_7, ACT domain.  The ACT domain is a structural 
motif of 70-90 amino acids that functions in the control of 
metabolism, solute transport and signal transduction. They 
are thus found in a variety of different proteins in a variety 
of different arrangements. In mammalian phenylalanine hydroxylase 
the domain forms no contacts but promotes an allosteric 
effect despite the apparent lack of ligand binding.
Length=65

 Score = 76.8 bits (190),  Expect = 4e-19, Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query  114  ISQDDFIAMQVYGEGL--EAGQRVLELTSPLAMAGISIFFISTYFSDYIIVPLRSKAQVI  171
             S+D +  + V G GL  +    V +LTSPLA AGISIF IS+Y +DY++VP     + +
Sbjct  1    ESEDGWAKLSVVGAGLDFDVPGVVAKLTSPLAEAGISIFQISSYTTDYVLVPEEDLEKAV  60

Query  172  EALER  176
             AL  
Sbjct  61   RALHE  65



Lambda      K        H        a         alpha
   0.321    0.134    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283949556


Query= TCONS_00037653

Length=216


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00037654

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:433519 pfam13840, ACT_7, ACT domain. The ACT domain is a stru...  76.0    5e-18


>CDD:433519 pfam13840, ACT_7, ACT domain.  The ACT domain is a structural 
motif of 70-90 amino acids that functions in the control of 
metabolism, solute transport and signal transduction. They 
are thus found in a variety of different proteins in a variety 
of different arrangements. In mammalian phenylalanine hydroxylase 
the domain forms no contacts but promotes an allosteric 
effect despite the apparent lack of ligand binding.
Length=65

 Score = 76.0 bits (188),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query  119  ISQDDFIAMQVYGEGL--EAGQRVLELTSPLAMAGISIFFISTYFSDYIIVPLRSKAQVI  176
             S+D +  + V G GL  +    V +LTSPLA AGISIF IS+Y +DY++VP     + +
Sbjct  1    ESEDGWAKLSVVGAGLDFDVPGVVAKLTSPLAEAGISIFQISSYTTDYVLVPEEDLEKAV  60

Query  177  EALER  181
             AL  
Sbjct  61   RALHE  65



Lambda      K        H        a         alpha
   0.317    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00037655

Length=157
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395596 pfam00735, Septin, Septin. Members of this family incl...  116     4e-33


>CDD:395596 pfam00735, Septin, Septin.  Members of this family include CDC3, 
CDC10, CDC11 and CDC12/Septin. Members of this family bind 
GTP. As regards the septins, these are polypeptides of 30-65kDa 
with three characteristic GTPase motifs (G-1, G-3 and 
G-4) that are similar to those of the Ras family. The G-4 motif 
is strictly conserved with a unique septin consensus of 
AKAD. Most septins are thought to have at least one coiled-coil 
region, which in some cases is necessary for intermolecular 
interactions that allow septins to polymerize to form rod-shaped 
complexes. In turn, these are arranged into tandem 
arrays to form filaments. They are multifunctional proteins, 
with roles in cytokinesis, sporulation, germ cell development, 
exocytosis and apoptosis.
Length=272

 Score = 116 bits (292),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 55/76 (72%), Gaps = 1/76 (1%)

Query  2    AAMPFAVIGSEKDVKTNDNRVVKGRQYAWGVAEVENEDHCDFKKLRSILIRTHMLDLIHT  61
            +++PFA++GS   ++ ND   V+GR+Y WGV EVEN  HCDF KLR++LIRTH+ DL   
Sbjct  198  SSIPFAIVGSNTVIE-NDGEKVRGRKYPWGVVEVENPSHCDFLKLRNMLIRTHLQDLKEV  256

Query  62   TEEQHYEAYRAQQMET  77
            T E HYE YR++++  
Sbjct  257  THELHYETYRSEKLSA  272



Lambda      K        H        a         alpha
   0.321    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133216468


Query= TCONS_00037656

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395596 pfam00735, Septin, Septin. Members of this family incl...  117     4e-33


>CDD:395596 pfam00735, Septin, Septin.  Members of this family include CDC3, 
CDC10, CDC11 and CDC12/Septin. Members of this family bind 
GTP. As regards the septins, these are polypeptides of 30-65kDa 
with three characteristic GTPase motifs (G-1, G-3 and 
G-4) that are similar to those of the Ras family. The G-4 motif 
is strictly conserved with a unique septin consensus of 
AKAD. Most septins are thought to have at least one coiled-coil 
region, which in some cases is necessary for intermolecular 
interactions that allow septins to polymerize to form rod-shaped 
complexes. In turn, these are arranged into tandem 
arrays to form filaments. They are multifunctional proteins, 
with roles in cytokinesis, sporulation, germ cell development, 
exocytosis and apoptosis.
Length=272

 Score = 117 bits (295),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 55/76 (72%), Gaps = 1/76 (1%)

Query  2    AAMPFAVIGSEKDVKTNDNRVVKGRQYAWGVAEVENEDHCDFKKLRSILIRTHMLDLIHT  61
            +++PFA++GS   ++ ND   V+GR+Y WGV EVEN  HCDF KLR++LIRTH+ DL   
Sbjct  198  SSIPFAIVGSNTVIE-NDGEKVRGRKYPWGVVEVENPSHCDFLKLRNMLIRTHLQDLKEV  256

Query  62   TEEQHYEAYRAQQMET  77
            T E HYE YR++++  
Sbjct  257  THELHYETYRSEKLSA  272



Lambda      K        H        a         alpha
   0.318    0.131    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 185988880


Query= TCONS_00037657

Length=926
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461125 pfam04003, Utp12, Dip2/Utp12 Family. This domain is fo...  122     2e-33


>CDD:461125 pfam04003, Utp12, Dip2/Utp12 Family.  This domain is found at 
the C-terminus of proteins containing WD40 repeats. These proteins 
are part of the U3 ribonucleoprotein the yeast protein 
is called Utp12 or DIP2.
Length=106

 Score = 122 bits (308),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 45/107 (42%), Positives = 64/107 (60%), Gaps = 2/107 (2%)

Query  775  NESKLIRAVYEAIPPSEIPLVVRALPTVYLSRFLRFVAQS-AEETPHLEFNLRWIESLLS  833
            N+  L+ +V E IPPS+I L +  LP  Y+ R L+F+A+  AE +PHLE  LRW++ LL 
Sbjct  1    NDEYLLESVLEKIPPSDIELTLLRLPFSYVLRLLKFLAERLAERSPHLELLLRWLKFLLR  60

Query  834  IHGRYFKDNSGTLATELRAIQRAVDDIRENLRKLTEKNLYDLNYLLS  880
             HG Y   N   L   LR++Q+ +    + L+ L   NL  L+YLLS
Sbjct  61   THGGYLVSNP-DLRPVLRSLQKLLRRRLKELKDLLGLNLGALDYLLS  106



Lambda      K        H        a         alpha
   0.319    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1192912134


Query= TCONS_00037658

Length=902
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461125 pfam04003, Utp12, Dip2/Utp12 Family. This domain is fo...  123     1e-33


>CDD:461125 pfam04003, Utp12, Dip2/Utp12 Family.  This domain is found at 
the C-terminus of proteins containing WD40 repeats. These proteins 
are part of the U3 ribonucleoprotein the yeast protein 
is called Utp12 or DIP2.
Length=106

 Score = 123 bits (310),  Expect = 1e-33, Method: Composition-based stats.
 Identities = 45/107 (42%), Positives = 64/107 (60%), Gaps = 2/107 (2%)

Query  751  NESKLIRAVYEAIPPSEIPLVVRALPTVYLSRFLRFVAQS-AEETPHLEFNLRWIESLLS  809
            N+  L+ +V E IPPS+I L +  LP  Y+ R L+F+A+  AE +PHLE  LRW++ LL 
Sbjct  1    NDEYLLESVLEKIPPSDIELTLLRLPFSYVLRLLKFLAERLAERSPHLELLLRWLKFLLR  60

Query  810  IHGRYFKDNSGTLATELRAIQRAVDDIRENLRKLTEKNLYDLNYLLS  856
             HG Y   N   L   LR++Q+ +    + L+ L   NL  L+YLLS
Sbjct  61   THGGYLVSNP-DLRPVLRSLQKLLRRRLKELKDLLGLNLGALDYLLS  106



Lambda      K        H        a         alpha
   0.319    0.135    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1158459798


Query= TCONS_00037659

Length=211


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 213909760


Query= TCONS_00037660

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  97.3    5e-22


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 97.3 bits (243),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 109/273 (40%), Gaps = 14/273 (5%)

Query  267  RPFPNFMRPLVAKVLPSVKKLRTQLRFVQNELFIPMILARREAEINGPAYQKPDDFLQWM  326
             P    + P++        +   + R    +L   +I  RRE      A + P DFL  +
Sbjct  188  SPQLLDLFPILKYFPGPHGRKLKRARKKIKDLLDKLIEERRE--TLDSAKKSPRDFLDAL  245

Query  327  MDLAEDDFDK---DPANISQMLLIVMALAVVHTSSMLMTHAIYDLMIRPEYIEPLREEIR  383
            + LA+++ D        +   +L +   A   T+S  ++ A+Y+L   PE  E LREEI 
Sbjct  246  L-LAKEEEDGSKLTDEELRATVLELFF-AGTDTTSSTLSWALYELAKHPEVQEKLREEID  303

Query  384  GTLKDGWDKVTQASFASQRRLDSFMRESQRFNPTGELSTHRMVMETMVLSDGLVLEKGTH  443
              + D     T     +   LD+ ++E+ R +P   L   R V +  V+  G ++ KGT 
Sbjct  304  EVIGDK-RSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVI-PGYLIPKGTL  361

Query  444  ICFPSKPMGMDDSIIEDALTFRGFRWCEDPEARSTSLVSISPSNMHFGYGRQACPGRFFA  503
            +      +  D  +  +   F   R+    E         S + + FG G + C G   A
Sbjct  362  VIVNLYALHRDPEVFPNPEEFDPERF--LDENGKFRK---SFAFLPFGAGPRNCLGERLA  416

Query  504  ANTNKAILGRLIADYEFKFEGDNNKRPRNLTLG  536
                K  L  L+ ++E +     +    + T G
Sbjct  417  RMEMKLFLATLLQNFEVELPPGTDPPDIDETPG  449



Lambda      K        H        a         alpha
   0.324    0.139    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 691920164


Query= TCONS_00043178

Length=455


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.140    0.426    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 559801960


Query= TCONS_00037661

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395020 pfam00067, p450, Cytochrome P450. Cytochrome P450s are...  97.3    4e-22


>CDD:395020 pfam00067, p450, Cytochrome P450.  Cytochrome P450s are haem-thiolate 
proteins involved in the oxidative degradation of various 
compounds. They are particularly well known for their 
role in the degradation of environmental toxins and mutagens. 
They can be divided into 4 classes, according to the method 
by which electrons from NAD(P)H are delivered to the catalytic 
site. Sequence conservation is relatively low within the 
family - there are only 3 absolutely conserved residues - 
but their general topography and structural fold are highly 
conserved. The conserved core is composed of a coil termed 
the 'meander', a four-helix bundle, helices J and K, and two 
sets of beta-sheets. These constitute the haem-binding loop 
(with an absolutely conserved cysteine that serves as the 5th 
ligand for the haem iron), the proton-transfer groove and 
the absolutely conserved EXXR motif in helix K. While prokaryotic 
P450s are soluble proteins, most eukaryotic P450s are 
associated with microsomal membranes. their general enzymatic 
function is to catalyze regiospecific and stereospecific 
oxidation of non-activated hydrocarbons at physiological temperatures.
Length=461

 Score = 97.3 bits (243),  Expect = 4e-22, Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 109/273 (40%), Gaps = 14/273 (5%)

Query  288  RPFPNFMRPLVAKVLPSVKKLRTQLRFVQNELFIPMILARREAEINGPAYQKPDDFLQWM  347
             P    + P++        +   + R    +L   +I  RRE      A + P DFL  +
Sbjct  188  SPQLLDLFPILKYFPGPHGRKLKRARKKIKDLLDKLIEERRE--TLDSAKKSPRDFLDAL  245

Query  348  MDLAEDDFDK---DPANISQMLLIVMALAVVHTSSMLMTHAIYDLMIRPEYIEPLREEIR  404
            + LA+++ D        +   +L +   A   T+S  ++ A+Y+L   PE  E LREEI 
Sbjct  246  L-LAKEEEDGSKLTDEELRATVLELFF-AGTDTTSSTLSWALYELAKHPEVQEKLREEID  303

Query  405  GTLKDGWDKVTQASFASQRRLDSFMRESQRFNPTGELSTHRMVMETMVLSDGLVLEKGTH  464
              + D     T     +   LD+ ++E+ R +P   L   R V +  V+  G ++ KGT 
Sbjct  304  EVIGDK-RSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVI-PGYLIPKGTL  361

Query  465  ICFPSKPMGMDDSIIEDALTFRGFRWCEDPEARSTSLVSISPSNMHFGYGRQACPGRFFA  524
            +      +  D  +  +   F   R+    E         S + + FG G + C G   A
Sbjct  362  VIVNLYALHRDPEVFPNPEEFDPERF--LDENGKFRK---SFAFLPFGAGPRNCLGERLA  416

Query  525  ANTNKAILGRLIADYEFKFEGDNNKRPRNLTLG  557
                K  L  L+ ++E +     +    + T G
Sbjct  417  RMEMKLFLATLLQNFEVELPPGTDPPDIDETPG  449



Lambda      K        H        a         alpha
   0.324    0.139    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 723303152


Query= TCONS_00037662

Length=843
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436418 pfam18332, XRN1_D1, Exoribonuclease Xrn1 D1 domain. Th...  352     2e-117
CDD:436419 pfam18334, XRN1_D2_D3, Exoribonuclease Xrn1 D2/D3 doma...  162     9e-48 
CDD:375377 pfam17846, XRN_M, Xrn1 helical domain. This helical do...  165     1e-44 
CDD:465674 pfam18194, Xrn1_D3, Exoribonuclease 1 Domain-3. This d...  116     7e-32 
CDD:465661 pfam18129, SH3_12, Xrn1 SH3-like domain. This is the C...  113     8e-31 


>CDD:436418 pfam18332, XRN1_D1, Exoribonuclease Xrn1 D1 domain.  This domain 
can be found in 5' to 3' exoribonuclease 1 (XRN1) which 
belong to a family of conserved enzymes in eukaryotes and have 
important functions in transcription, RNA metabolism, and 
RNA interference. Xrn1 in fungi and animals is primarily cytosolic 
and is involved in degradation of decapped mRNAs, nonsense 
mediated decay, microRNA decay and is essential for proper 
development. The Xrn1 homolog in Drosophila, known as 
Pacman, is required for male fertility. This domain (D1) along 
with 3 other domains, make up a 510-residue segment following 
the conserved regions found in XRNs but they are only present 
in XRN1 and are absent in Rat1/XRN2. The amino acid sequences 
of these four domains contain an excess of basic residues, 
suggesting that these domains might help in binding 
the RNA substrate. Mutational studies carried out in D1 domain 
show that the mutant forms had dramatically reduced nuclease 
activity towards ssDNA substrate indicating that domain 
D1 is required for Xrn1 nuclease activity.
Length=192

 Score = 352 bits (906),  Expect = 2e-117, Method: Composition-based stats.
 Identities = 127/192 (66%), Positives = 154/192 (80%), Gaps = 4/192 (2%)

Query  146  GLVEGVQLGAAALAGFPSLKTLPHVGQLGFHGVCVFQQESRNESMVITVLDP-GSRSNIE  204
            GL +G +LGA ALAGFPSLKTLP   QLGFHGV VFQQ+SRNESMV+T+ +   +R+  E
Sbjct  1    GLCDGAKLGAEALAGFPSLKTLPFTAQLGFHGVNVFQQDSRNESMVVTIENKEENRTVEE  60

Query  205  LAKQKLGKRVFVGYPFLQEALVIRVSDELFDYLL---PEGENHVVSIPHTEAQIDQWKKK  261
            +AK+KLGKRVFVG+PFLQEA V+ VSDELFDY L    +G   +VS PH+  +I QWKKK
Sbjct  61   IAKRKLGKRVFVGWPFLQEAKVVAVSDELFDYELSEVVDGGKKIVSRPHSPREIKQWKKK  120

Query  262  ADKIEGIYSRRLGTIIGPVESMVHVQLLKGLIKTDEGATIKEFADIPGQETDYALQLVVD  321
            A++IE  YS+RLG IIG VE +VHV+ LKGL +TD+GA +KE+A+IP  ETDYALQLVVD
Sbjct  121  AERIERNYSKRLGVIIGDVEVLVHVRPLKGLKRTDDGALVKEYAEIPEYETDYALQLVVD  180

Query  322  EVINPDERFIER  333
            EV+N DERFIER
Sbjct  181  EVVNEDERFIER  192


>CDD:436419 pfam18334, XRN1_D2_D3, Exoribonuclease Xrn1 D2/D3 domain.  This 
domain can be found in 5' to 3' exoribonuclease 1 (XRN1) 
which belong to a family of conserved enzymes in eukaryotes 
and have important functions in transcription, RNA metabolism, 
and RNA interference. Xrn1 in fungi and animals is primarily 
cytosolic, involved in degradation of decapped mRNAs, nonsense 
mediated decay, microRNA decay and is essential for proper 
development. The Xrn1 homolog in Drosophila, known as 
Pacman, is required for male fertility. This entry relates to 
domain 2 and 3 combined which can be found in the 510-residue 
C-terminal extension found in XRN1 and not in XRN2/Rat1. 
Domain D2 is formed by two stretches of Xrn1, residues 915-960 
and 1134-1151. The presence of domain (D3) is suggested 
based on structure. This domain is formed by residues 979-1109, 
in the insert of domain D2. It is suggested that domains 
D2-D4 may help maintain domain D1 pfam18332 in the correct 
conformation, thereby indirectly stabilising the conformation 
of the N-terminal segment pfam03159.
Length=87

 Score = 162 bits (412),  Expect = 9e-48, Method: Composition-based stats.
 Identities = 51/87 (59%), Positives = 67/87 (77%), Gaps = 1/87 (1%)

Query  337  PIEKEFPEGSRAFFLGDFNYGRPVHITGHEDGKVNGLIAAIKG-REPEFGRDRAREAERL  395
            PIE+EFPEGSRAFFLG++ YGRP  +TGH DGK++ +++  K  +EP FG+ R  +AER 
Sbjct  1    PIEEEFPEGSRAFFLGEYAYGRPAQVTGHSDGKLSVVVSKFKSDKEPNFGKKRIVQAERS  60

Query  396  CPYMPSFAIARSLRLNPLVLAKITSSF  422
              Y PSFA+A+ L L+PL L+KITSSF
Sbjct  61   NRYYPSFAVAKMLGLHPLALSKITSSF  87


>CDD:375377 pfam17846, XRN_M, Xrn1 helical domain.  This helical domain is 
part of the Xrn1 catalytic core. Xrn1 is a cytoplasmic 5'-3' 
exonuclease that degrades decapped mRNAs.
Length=442

 Score = 165 bits (419),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 69/93 (74%), Gaps = 0/93 (0%)

Query  2    NFKLGQPFKPYEQLMGVLPDRSKQIVPAAFRDLMTSPESPIIDFYPREFELDMNGKKMEW  61
             F+ GQPFKP+EQLMGV P  SK  +P  ++ LMT P+SPIIDFYP +FE+D+NGK+  W
Sbjct  244  KFEKGQPFKPFEQLMGVFPAASKHALPKPYQALMTDPDSPIIDFYPEDFEIDLNGKRYAW  303

Query  62   EAVVKIPFIDERRLLEALATREHLLTPEEKARN  94
            + V  +PFIDE+RLLEAL   E+ LT EE  RN
Sbjct  304  QGVALLPFIDEKRLLEALRKLENELTEEEVKRN  336


>CDD:465674 pfam18194, Xrn1_D3, Exoribonuclease 1 Domain-3.  This domain 
is found in 5' to 3' exoribonuclease 1 (XRN1) present in Kluyveromyces 
lactis. XRN1 is involved in transcription, RNA metabolism, 
and RNA interference. This domain, known as D3, is 
the third of four domains located far from the active site. 
These four domains may help to stabilize the N-terminal segment 
of Xrn1 for catalysis.
Length=71

 Score = 116 bits (293),  Expect = 7e-32, Method: Composition-based stats.
 Identities = 36/67 (54%), Positives = 52/67 (78%), Gaps = 0/67 (0%)

Query  504  KMKEIRDWLKAMEAKNFERVPLEAEQLDSDVVKLIEQDADRLVQSQPPMQPKKIRGVPRS  563
            K+KEI+ WLK++E  +FERV LE++QL  + VK IE+ AD  V + PP++ KK++GVPR 
Sbjct  4    KVKEIKAWLKSVEKSDFERVSLESDQLTKESVKAIEKAADEYVANPPPIEKKKLKGVPRQ  63

Query  564  ALLRPSD  570
            A+L+PSD
Sbjct  64   AVLKPSD  70


>CDD:465661 pfam18129, SH3_12, Xrn1 SH3-like domain.  This is the C-terminal 
SH3-like domain which can be found in the exoribonuclease 
Xrn1. Xrn1 is a 175 kDa processive exoribonuclease that is 
conserved from yeast to mammals which targets cytoplasmic RNA 
substrates marked by a 5' monophosphate for processive 5'-to-3' 
degradation. The Sh3-like domain in Xrn1 lacks the canonical 
SH3 residues normally involved in binding proline-rich 
peptide motifs and instead engages in non-canonical interactions 
with the catalytic domain. Additionally it is essential 
in maintaining the structural integrity of Xrn1, since partial 
truncation of this domain in yeast Xrn1 yields an inactive 
protein. There is a long loop projecting from the SH3-like 
domain that contacts the PAZ/Tudor domain, occluding the 
functional surface that binds RNA or peptide motifs containing 
methylated arginines, respectively, in canonical PAZ and 
Tudor domain.
Length=68

 Score = 113 bits (285),  Expect = 8e-31, Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 49/71 (69%), Gaps = 3/71 (4%)

Query  578  QTFKLGDRVVYAQDSGKVPIATRGTVVGLTRTPRAMLLDVVFDVSFMSGTTLGDRCSPFR  637
            Q F+LGDRVVY +DSG VP   +GTVVG        LLDV+FD  FM GTTLG RCS +R
Sbjct  1    QKFRLGDRVVYVRDSGGVPFGLKGTVVGKGED---TLLDVLFDEPFMGGTTLGGRCSTYR  57

Query  638  GQTVLASSVLN  648
            G TV  S++LN
Sbjct  58   GLTVPPSALLN  68



Lambda      K        H        a         alpha
   0.317    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 1073764472


Query= TCONS_00037663

Length=843
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:436418 pfam18332, XRN1_D1, Exoribonuclease Xrn1 D1 domain. Th...  352     2e-117
CDD:436419 pfam18334, XRN1_D2_D3, Exoribonuclease Xrn1 D2/D3 doma...  162     9e-48 
CDD:375377 pfam17846, XRN_M, Xrn1 helical domain. This helical do...  165     1e-44 
CDD:465674 pfam18194, Xrn1_D3, Exoribonuclease 1 Domain-3. This d...  116     7e-32 
CDD:465661 pfam18129, SH3_12, Xrn1 SH3-like domain. This is the C...  113     8e-31 


>CDD:436418 pfam18332, XRN1_D1, Exoribonuclease Xrn1 D1 domain.  This domain 
can be found in 5' to 3' exoribonuclease 1 (XRN1) which 
belong to a family of conserved enzymes in eukaryotes and have 
important functions in transcription, RNA metabolism, and 
RNA interference. Xrn1 in fungi and animals is primarily cytosolic 
and is involved in degradation of decapped mRNAs, nonsense 
mediated decay, microRNA decay and is essential for proper 
development. The Xrn1 homolog in Drosophila, known as 
Pacman, is required for male fertility. This domain (D1) along 
with 3 other domains, make up a 510-residue segment following 
the conserved regions found in XRNs but they are only present 
in XRN1 and are absent in Rat1/XRN2. The amino acid sequences 
of these four domains contain an excess of basic residues, 
suggesting that these domains might help in binding 
the RNA substrate. Mutational studies carried out in D1 domain 
show that the mutant forms had dramatically reduced nuclease 
activity towards ssDNA substrate indicating that domain 
D1 is required for Xrn1 nuclease activity.
Length=192

 Score = 352 bits (906),  Expect = 2e-117, Method: Composition-based stats.
 Identities = 127/192 (66%), Positives = 154/192 (80%), Gaps = 4/192 (2%)

Query  146  GLVEGVQLGAAALAGFPSLKTLPHVGQLGFHGVCVFQQESRNESMVITVLDP-GSRSNIE  204
            GL +G +LGA ALAGFPSLKTLP   QLGFHGV VFQQ+SRNESMV+T+ +   +R+  E
Sbjct  1    GLCDGAKLGAEALAGFPSLKTLPFTAQLGFHGVNVFQQDSRNESMVVTIENKEENRTVEE  60

Query  205  LAKQKLGKRVFVGYPFLQEALVIRVSDELFDYLL---PEGENHVVSIPHTEAQIDQWKKK  261
            +AK+KLGKRVFVG+PFLQEA V+ VSDELFDY L    +G   +VS PH+  +I QWKKK
Sbjct  61   IAKRKLGKRVFVGWPFLQEAKVVAVSDELFDYELSEVVDGGKKIVSRPHSPREIKQWKKK  120

Query  262  ADKIEGIYSRRLGTIIGPVESMVHVQLLKGLIKTDEGATIKEFADIPGQETDYALQLVVD  321
            A++IE  YS+RLG IIG VE +VHV+ LKGL +TD+GA +KE+A+IP  ETDYALQLVVD
Sbjct  121  AERIERNYSKRLGVIIGDVEVLVHVRPLKGLKRTDDGALVKEYAEIPEYETDYALQLVVD  180

Query  322  EVINPDERFIER  333
            EV+N DERFIER
Sbjct  181  EVVNEDERFIER  192


>CDD:436419 pfam18334, XRN1_D2_D3, Exoribonuclease Xrn1 D2/D3 domain.  This 
domain can be found in 5' to 3' exoribonuclease 1 (XRN1) 
which belong to a family of conserved enzymes in eukaryotes 
and have important functions in transcription, RNA metabolism, 
and RNA interference. Xrn1 in fungi and animals is primarily 
cytosolic, involved in degradation of decapped mRNAs, nonsense 
mediated decay, microRNA decay and is essential for proper 
development. The Xrn1 homolog in Drosophila, known as 
Pacman, is required for male fertility. This entry relates to 
domain 2 and 3 combined which can be found in the 510-residue 
C-terminal extension found in XRN1 and not in XRN2/Rat1. 
Domain D2 is formed by two stretches of Xrn1, residues 915-960 
and 1134-1151. The presence of domain (D3) is suggested 
based on structure. This domain is formed by residues 979-1109, 
in the insert of domain D2. It is suggested that domains 
D2-D4 may help maintain domain D1 pfam18332 in the correct 
conformation, thereby indirectly stabilising the conformation 
of the N-terminal segment pfam03159.
Length=87

 Score = 162 bits (412),  Expect = 9e-48, Method: Composition-based stats.
 Identities = 51/87 (59%), Positives = 67/87 (77%), Gaps = 1/87 (1%)

Query  337  PIEKEFPEGSRAFFLGDFNYGRPVHITGHEDGKVNGLIAAIKG-REPEFGRDRAREAERL  395
            PIE+EFPEGSRAFFLG++ YGRP  +TGH DGK++ +++  K  +EP FG+ R  +AER 
Sbjct  1    PIEEEFPEGSRAFFLGEYAYGRPAQVTGHSDGKLSVVVSKFKSDKEPNFGKKRIVQAERS  60

Query  396  CPYMPSFAIARSLRLNPLVLAKITSSF  422
              Y PSFA+A+ L L+PL L+KITSSF
Sbjct  61   NRYYPSFAVAKMLGLHPLALSKITSSF  87


>CDD:375377 pfam17846, XRN_M, Xrn1 helical domain.  This helical domain is 
part of the Xrn1 catalytic core. Xrn1 is a cytoplasmic 5'-3' 
exonuclease that degrades decapped mRNAs.
Length=442

 Score = 165 bits (419),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 69/93 (74%), Gaps = 0/93 (0%)

Query  2    NFKLGQPFKPYEQLMGVLPDRSKQIVPAAFRDLMTSPESPIIDFYPREFELDMNGKKMEW  61
             F+ GQPFKP+EQLMGV P  SK  +P  ++ LMT P+SPIIDFYP +FE+D+NGK+  W
Sbjct  244  KFEKGQPFKPFEQLMGVFPAASKHALPKPYQALMTDPDSPIIDFYPEDFEIDLNGKRYAW  303

Query  62   EAVVKIPFIDERRLLEALATREHLLTPEEKARN  94
            + V  +PFIDE+RLLEAL   E+ LT EE  RN
Sbjct  304  QGVALLPFIDEKRLLEALRKLENELTEEEVKRN  336


>CDD:465674 pfam18194, Xrn1_D3, Exoribonuclease 1 Domain-3.  This domain 
is found in 5' to 3' exoribonuclease 1 (XRN1) present in Kluyveromyces 
lactis. XRN1 is involved in transcription, RNA metabolism, 
and RNA interference. This domain, known as D3, is 
the third of four domains located far from the active site. 
These four domains may help to stabilize the N-terminal segment 
of Xrn1 for catalysis.
Length=71

 Score = 116 bits (293),  Expect = 7e-32, Method: Composition-based stats.
 Identities = 36/67 (54%), Positives = 52/67 (78%), Gaps = 0/67 (0%)

Query  504  KMKEIRDWLKAMEAKNFERVPLEAEQLDSDVVKLIEQDADRLVQSQPPMQPKKIRGVPRS  563
            K+KEI+ WLK++E  +FERV LE++QL  + VK IE+ AD  V + PP++ KK++GVPR 
Sbjct  4    KVKEIKAWLKSVEKSDFERVSLESDQLTKESVKAIEKAADEYVANPPPIEKKKLKGVPRQ  63

Query  564  ALLRPSD  570
            A+L+PSD
Sbjct  64   AVLKPSD  70


>CDD:465661 pfam18129, SH3_12, Xrn1 SH3-like domain.  This is the C-terminal 
SH3-like domain which can be found in the exoribonuclease 
Xrn1. Xrn1 is a 175 kDa processive exoribonuclease that is 
conserved from yeast to mammals which targets cytoplasmic RNA 
substrates marked by a 5' monophosphate for processive 5'-to-3' 
degradation. The Sh3-like domain in Xrn1 lacks the canonical 
SH3 residues normally involved in binding proline-rich 
peptide motifs and instead engages in non-canonical interactions 
with the catalytic domain. Additionally it is essential 
in maintaining the structural integrity of Xrn1, since partial 
truncation of this domain in yeast Xrn1 yields an inactive 
protein. There is a long loop projecting from the SH3-like 
domain that contacts the PAZ/Tudor domain, occluding the 
functional surface that binds RNA or peptide motifs containing 
methylated arginines, respectively, in canonical PAZ and 
Tudor domain.
Length=68

 Score = 113 bits (285),  Expect = 8e-31, Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 49/71 (69%), Gaps = 3/71 (4%)

Query  578  QTFKLGDRVVYAQDSGKVPIATRGTVVGLTRTPRAMLLDVVFDVSFMSGTTLGDRCSPFR  637
            Q F+LGDRVVY +DSG VP   +GTVVG        LLDV+FD  FM GTTLG RCS +R
Sbjct  1    QKFRLGDRVVYVRDSGGVPFGLKGTVVGKGED---TLLDVLFDEPFMGGTTLGGRCSTYR  57

Query  638  GQTVLASSVLN  648
            G TV  S++LN
Sbjct  58   GLTVPPSALLN  68



Lambda      K        H        a         alpha
   0.317    0.137    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1073764472


Query= TCONS_00037664

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00037665

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463513 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 ...  87.2    5e-22


>CDD:463513 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 or subunit 
C of CAF1 complex.  The CAF-1 complex is a conserved heterotrimeric 
protein complex that promotes histone H3 and H4 
deposition onto newly synthesized DNA during replication or 
DNA repair; specifically it facilitates replication-dependent 
nucleosome assembly with the major histone H3 (H3.1). This 
domain is an alpha helix which sits just upstream of the WD40 
seven-bladed beta-propeller in the human RbAp46 protein. 
RbAp46 folds into the beta-propeller and binds histone H4 in 
a groove formed between this N-terminal helix and an extended 
loop inserted into blade six.
Length=69

 Score = 87.2 bits (217),  Expect = 5e-22, Method: Composition-based stats.
 Identities = 31/69 (45%), Positives = 37/69 (54%), Gaps = 17/69 (25%)

Query  27  EEYKTWKKNAPFLYDMILSTALEWPTLTTQWLPDKQ-----------------DDAQNYL  69
           EEY  WKKNAPFLYDM+ + ALEWP+L+  W PD                      QNYL
Sbjct  1   EEYLIWKKNAPFLYDMLHTHALEWPSLSFDWFPDTSEGKNYTVQRLLLGTQTSGAEQNYL  60

Query  70  QIAHVQLPN  78
            +A V LP+
Sbjct  61  YVAKVSLPS  69



Lambda      K        H        a         alpha
   0.312    0.130    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 509496176


Query= TCONS_00043179

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.329    0.129    0.366    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83786872


Query= TCONS_00043181

Length=312


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00043180

Length=312


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00037666

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463513 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 ...  118     2e-33


>CDD:463513 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 or subunit 
C of CAF1 complex.  The CAF-1 complex is a conserved heterotrimeric 
protein complex that promotes histone H3 and H4 
deposition onto newly synthesized DNA during replication or 
DNA repair; specifically it facilitates replication-dependent 
nucleosome assembly with the major histone H3 (H3.1). This 
domain is an alpha helix which sits just upstream of the WD40 
seven-bladed beta-propeller in the human RbAp46 protein. 
RbAp46 folds into the beta-propeller and binds histone H4 in 
a groove formed between this N-terminal helix and an extended 
loop inserted into blade six.
Length=69

 Score = 118 bits (297),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 41/71 (58%), Positives = 49/71 (69%), Gaps = 2/71 (3%)

Query  27  EEYKTWKKNAPFLYDMILSTALEWPTLTTQWLPDKQEVPDKPYSTHRLLIGTHTSSDAQN  86
           EEY  WKKNAPFLYDM+ + ALEWP+L+  W PD  E   K Y+  RLL+GT TS   QN
Sbjct  1   EEYLIWKKNAPFLYDMLHTHALEWPSLSFDWFPDTSE--GKNYTVQRLLLGTQTSGAEQN  58

Query  87  YLQIAHVQLPN  97
           YL +A V LP+
Sbjct  59  YLYVAKVSLPS  69



Lambda      K        H        a         alpha
   0.312    0.129    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 507942834


Query= TCONS_00037667

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463513 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 ...  82.6    2e-20


>CDD:463513 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 or subunit 
C of CAF1 complex.  The CAF-1 complex is a conserved heterotrimeric 
protein complex that promotes histone H3 and H4 
deposition onto newly synthesized DNA during replication or 
DNA repair; specifically it facilitates replication-dependent 
nucleosome assembly with the major histone H3 (H3.1). This 
domain is an alpha helix which sits just upstream of the WD40 
seven-bladed beta-propeller in the human RbAp46 protein. 
RbAp46 folds into the beta-propeller and binds histone H4 in 
a groove formed between this N-terminal helix and an extended 
loop inserted into blade six.
Length=69

 Score = 82.6 bits (205),  Expect = 2e-20, Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 2/56 (4%)

Query  1   MILSTALEWPTLTTQWLPDKQEVPDKPYSTHRLLIGTHTSSDAQNYLQIAHVQLPN  56
           M+ + ALEWP+L+  W PD  E   K Y+  RLL+GT TS   QNYL +A V LP+
Sbjct  16  MLHTHALEWPSLSFDWFPDTSE--GKNYTVQRLLLGTQTSGAEQNYLYVAKVSLPS  69



Lambda      K        H        a         alpha
   0.313    0.130    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 475322652


Query= TCONS_00037668

Length=425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463513 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 ...  116     9e-33


>CDD:463513 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 or subunit 
C of CAF1 complex.  The CAF-1 complex is a conserved heterotrimeric 
protein complex that promotes histone H3 and H4 
deposition onto newly synthesized DNA during replication or 
DNA repair; specifically it facilitates replication-dependent 
nucleosome assembly with the major histone H3 (H3.1). This 
domain is an alpha helix which sits just upstream of the WD40 
seven-bladed beta-propeller in the human RbAp46 protein. 
RbAp46 folds into the beta-propeller and binds histone H4 in 
a groove formed between this N-terminal helix and an extended 
loop inserted into blade six.
Length=69

 Score = 116 bits (293),  Expect = 9e-33, Method: Composition-based stats.
 Identities = 40/70 (57%), Positives = 48/70 (69%), Gaps = 2/70 (3%)

Query  17  EYKTWKKNAPFLYDMILSTALEWPTLTTQWLPDKQEVPDKPYSTHRLLIGTHTSSDAQNY  76
           EY  WKKNAPFLYDM+ + ALEWP+L+  W PD  E   K Y+  RLL+GT TS   QNY
Sbjct  2   EYLIWKKNAPFLYDMLHTHALEWPSLSFDWFPDTSE--GKNYTVQRLLLGTQTSGAEQNY  59

Query  77  LQIAHVQLPN  86
           L +A V LP+
Sbjct  60  LYVAKVSLPS  69



Lambda      K        H        a         alpha
   0.313    0.130    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521922912


Query= TCONS_00037669

Length=312


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00037670

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463513 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 ...  118     3e-33


>CDD:463513 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 or subunit 
C of CAF1 complex.  The CAF-1 complex is a conserved heterotrimeric 
protein complex that promotes histone H3 and H4 
deposition onto newly synthesized DNA during replication or 
DNA repair; specifically it facilitates replication-dependent 
nucleosome assembly with the major histone H3 (H3.1). This 
domain is an alpha helix which sits just upstream of the WD40 
seven-bladed beta-propeller in the human RbAp46 protein. 
RbAp46 folds into the beta-propeller and binds histone H4 in 
a groove formed between this N-terminal helix and an extended 
loop inserted into blade six.
Length=69

 Score = 118 bits (297),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 41/71 (58%), Positives = 49/71 (69%), Gaps = 2/71 (3%)

Query  27  EEYKTWKKNAPFLYDMILSTALEWPTLTTQWLPDKQEVPDKPYSTHRLLIGTHTSSDAQN  86
           EEY  WKKNAPFLYDM+ + ALEWP+L+  W PD  E   K Y+  RLL+GT TS   QN
Sbjct  1   EEYLIWKKNAPFLYDMLHTHALEWPSLSFDWFPDTSE--GKNYTVQRLLLGTQTSGAEQN  58

Query  87  YLQIAHVQLPN  97
           YL +A V LP+
Sbjct  59  YLYVAKVSLPS  69



Lambda      K        H        a         alpha
   0.312    0.130    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00043182

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463513 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 ...  102     1e-27


>CDD:463513 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 or subunit 
C of CAF1 complex.  The CAF-1 complex is a conserved heterotrimeric 
protein complex that promotes histone H3 and H4 
deposition onto newly synthesized DNA during replication or 
DNA repair; specifically it facilitates replication-dependent 
nucleosome assembly with the major histone H3 (H3.1). This 
domain is an alpha helix which sits just upstream of the WD40 
seven-bladed beta-propeller in the human RbAp46 protein. 
RbAp46 folds into the beta-propeller and binds histone H4 in 
a groove formed between this N-terminal helix and an extended 
loop inserted into blade six.
Length=69

 Score = 102 bits (257),  Expect = 1e-27, Method: Composition-based stats.
 Identities = 36/64 (56%), Positives = 44/64 (69%), Gaps = 2/64 (3%)

Query  34  KNAPFLYDMILSTALEWPTLTTQWLPDKQEVPDKPYSTHRLLIGTHTSSDAQNYLQIAHV  93
           KNAPFLYDM+ + ALEWP+L+  W PD  E   K Y+  RLL+GT TS   QNYL +A V
Sbjct  8   KNAPFLYDMLHTHALEWPSLSFDWFPDTSE--GKNYTVQRLLLGTQTSGAEQNYLYVAKV  65

Query  94  QLPN  97
            LP+
Sbjct  66  SLPS  69



Lambda      K        H        a         alpha
   0.312    0.131    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 530661584


Query= TCONS_00037671

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.331    0.137    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83297862


Query= TCONS_00043183

Length=312


***** No hits found *****



Lambda      K        H        a         alpha
   0.314    0.130    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 358339050


Query= TCONS_00043184

Length=54
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426139 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I. This...  81.8    2e-22


>CDD:426139 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I.  This family 
includes GTP cyclohydrolase enzymes and a family of related 
bacterial proteins.
Length=176

 Score = 81.8 bits (203),  Expect = 2e-22, Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 34/54 (63%), Gaps = 1/54 (2%)

Query  1   MLYFTKGYEENVRDLVNGAVFHEDHDELVIVKDIEVFSLCEHHMVPFTGKMHIG  54
                 GY E+    V  A F E +DE+V+VKDIE +S+CEHH++PF GK H+ 
Sbjct  32  YEELFSGYHEDPEK-VLKATFEEGYDEMVLVKDIEFYSMCEHHLLPFFGKAHVA  84



Lambda      K        H        a         alpha
   0.326    0.144    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81495046


Query= TCONS_00037672

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426139 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I. This...  278     2e-96


>CDD:426139 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I.  This family 
includes GTP cyclohydrolase enzymes and a family of related 
bacterial proteins.
Length=176

 Score = 278 bits (713),  Expect = 2e-96, Method: Composition-based stats.
 Identities = 98/177 (55%), Positives = 126/177 (71%), Gaps = 1/177 (1%)

Query  67   LAGAVRTIFECIGEDPEREGLRETPERYAKAMLYFTKGYEENVRDLVNGAVFHEDHDELV  126
            +  AVR I E IGEDP+REGL ETP+R AK       GY E+    V  A F E +DE+V
Sbjct  1    IEEAVREILEAIGEDPDREGLLETPKRVAKMYEELFSGYHEDPEK-VLKATFEEGYDEMV  59

Query  127  IVKDIEVFSLCEHHMVPFTGKMHIGYIPDRRVLGLSKLARLAEMFSRRLQVQERLTKQVA  186
            +VKDIE +S+CEHH++PF GK H+ YIP+ +V+GLSK+AR+ ++F+RRLQVQERLT Q+A
Sbjct  60   LVKDIEFYSMCEHHLLPFFGKAHVAYIPNGKVIGLSKIARIVDIFARRLQVQERLTAQIA  119

Query  187  LAISEVLKPRGVGVVMESSHLCMVMRGVQKTSSTTTTSCMLGCMRSSAKTREEFLTL  243
             A+ E+LKPRGV VV+E+ HLCM MRGV+K  S T TS   G  ++    R EFL L
Sbjct  120  DALQEILKPRGVAVVIEAEHLCMTMRGVRKPGSKTVTSAFRGVFKTDPALRAEFLAL  176



Lambda      K        H        a         alpha
   0.318    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 264366828


Query= TCONS_00037673

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426139 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I. This...  279     3e-96


>CDD:426139 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I.  This family 
includes GTP cyclohydrolase enzymes and a family of related 
bacterial proteins.
Length=176

 Score = 279 bits (716),  Expect = 3e-96, Method: Composition-based stats.
 Identities = 98/177 (55%), Positives = 126/177 (71%), Gaps = 1/177 (1%)

Query  111  LAGAVRTIFECIGEDPEREGLRETPERYAKAMLYFTKGYEENVRDLVNGAVFHEDHDELV  170
            +  AVR I E IGEDP+REGL ETP+R AK       GY E+    V  A F E +DE+V
Sbjct  1    IEEAVREILEAIGEDPDREGLLETPKRVAKMYEELFSGYHEDPEK-VLKATFEEGYDEMV  59

Query  171  IVKDIEVFSLCEHHMVPFTGKMHIGYIPDRRVLGLSKLARLAEMFSRRLQVQERLTKQVA  230
            +VKDIE +S+CEHH++PF GK H+ YIP+ +V+GLSK+AR+ ++F+RRLQVQERLT Q+A
Sbjct  60   LVKDIEFYSMCEHHLLPFFGKAHVAYIPNGKVIGLSKIARIVDIFARRLQVQERLTAQIA  119

Query  231  LAISEVLKPRGVGVVMESSHLCMVMRGVQKTSSTTTTSCMLGCMRSSAKTREEFLTL  287
             A+ E+LKPRGV VV+E+ HLCM MRGV+K  S T TS   G  ++    R EFL L
Sbjct  120  DALQEILKPRGVAVVIEAEHLCMTMRGVRKPGSKTVTSAFRGVFKTDPALRAEFLAL  176



Lambda      K        H        a         alpha
   0.316    0.133    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 330512480


Query= TCONS_00043185

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.130    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00037676

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426139 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I. This...  137     6e-41


>CDD:426139 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I.  This family 
includes GTP cyclohydrolase enzymes and a family of related 
bacterial proteins.
Length=176

 Score = 137 bits (347),  Expect = 6e-41, Method: Composition-based stats.
 Identities = 44/82 (54%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query  154  LAGAVRTIFECIGEDPEREGLRETPERYAKAMLYFTKGYEENVRDLVNGAVFHEDHDELV  213
            +  AVR I E IGEDP+REGL ETP+R AK       GY E+    V  A F E +DE+V
Sbjct  1    IEEAVREILEAIGEDPDREGLLETPKRVAKMYEELFSGYHEDPEK-VLKATFEEGYDEMV  59

Query  214  IVKDIEVFSLCEHHMVPFTGKV  235
            +VKDIE +S+CEHH++PF GK 
Sbjct  60   LVKDIEFYSMCEHHLLPFFGKA  81



Lambda      K        H        a         alpha
   0.314    0.134    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 285581450


Query= TCONS_00037675

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426139 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I. This...  233     1e-79


>CDD:426139 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I.  This family 
includes GTP cyclohydrolase enzymes and a family of related 
bacterial proteins.
Length=176

 Score = 233 bits (598),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 79/138 (57%), Positives = 104/138 (75%), Gaps = 1/138 (1%)

Query  77   LAGAVRTIFECIGEDPEREGLRETPERYAKAMLYFTKGYEENVRDLVNGAVFHEDHDELV  136
            +  AVR I E IGEDP+REGL ETP+R AK       GY E+    V  A F E +DE+V
Sbjct  1    IEEAVREILEAIGEDPDREGLLETPKRVAKMYEELFSGYHEDPEK-VLKATFEEGYDEMV  59

Query  137  IVKDIEVFSLCEHHMVPFTGKMHIGYIPDRRVLGLSKLARLAEMFSRRLQVQERLTKQVA  196
            +VKDIE +S+CEHH++PF GK H+ YIP+ +V+GLSK+AR+ ++F+RRLQVQERLT Q+A
Sbjct  60   LVKDIEFYSMCEHHLLPFFGKAHVAYIPNGKVIGLSKIARIVDIFARRLQVQERLTAQIA  119

Query  197  LAISEVLKPRGVGVVMES  214
             A+ E+LKPRGV VV+E+
Sbjct  120  DALQEILKPRGVAVVIEA  137



Lambda      K        H        a         alpha
   0.319    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 218923270


Query= TCONS_00037674

Length=217
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426139 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I. This...  136     3e-41


>CDD:426139 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I.  This family 
includes GTP cyclohydrolase enzymes and a family of related 
bacterial proteins.
Length=176

 Score = 136 bits (345),  Expect = 3e-41, Method: Composition-based stats.
 Identities = 44/82 (54%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query  111  LAGAVRTIFECIGEDPEREGLRETPERYAKAMLYFTKGYEENVRDLVNGAVFHEDHDELV  170
            +  AVR I E IGEDP+REGL ETP+R AK       GY E+    V  A F E +DE+V
Sbjct  1    IEEAVREILEAIGEDPDREGLLETPKRVAKMYEELFSGYHEDPEK-VLKATFEEGYDEMV  59

Query  171  IVKDIEVFSLCEHHMVPFTGKV  192
            +VKDIE +S+CEHH++PF GK 
Sbjct  60   LVKDIEFYSMCEHHLLPFFGKA  81



Lambda      K        H        a         alpha
   0.315    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 223936780


Query= TCONS_00037678

Length=100
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426139 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I. This...  147     3e-47


>CDD:426139 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I.  This family 
includes GTP cyclohydrolase enzymes and a family of related 
bacterial proteins.
Length=176

 Score = 147 bits (373),  Expect = 3e-47, Method: Composition-based stats.
 Identities = 54/95 (57%), Positives = 71/95 (75%), Gaps = 0/95 (0%)

Query  2    HIGYIPDRRVLGLSKLARLAEMFSRRLQVQERLTKQVALAISEVLKPRGVGVVMESSHLC  61
            H+ YIP+ +V+GLSK+AR+ ++F+RRLQVQERLT Q+A A+ E+LKPRGV VV+E+ HLC
Sbjct  82   HVAYIPNGKVIGLSKIARIVDIFARRLQVQERLTAQIADALQEILKPRGVAVVIEAEHLC  141

Query  62   MVMRGVQKTSSTTTTSCMLGCMRSSAKTREEFLTL  96
            M MRGV+K  S T TS   G  ++    R EFL L
Sbjct  142  MTMRGVRKPGSKTVTSAFRGVFKTDPALRAEFLAL  176



Lambda      K        H        a         alpha
   0.324    0.132    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00043186

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426139 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I. This...  218     9e-75


>CDD:426139 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I.  This family 
includes GTP cyclohydrolase enzymes and a family of related 
bacterial proteins.
Length=176

 Score = 218 bits (559),  Expect = 9e-75, Method: Composition-based stats.
 Identities = 78/146 (53%), Positives = 103/146 (71%), Gaps = 1/146 (1%)

Query  1    MLYFTKGYEENVRDLVNGAVFHEDHDELVIVKDIEVFSLCEHHMVPFTGKMHIGYIPDRR  60
                  GY E+    V  A F E +DE+V+VKDIE +S+CEHH++PF GK H+ YIP+ +
Sbjct  32   YEELFSGYHEDPEK-VLKATFEEGYDEMVLVKDIEFYSMCEHHLLPFFGKAHVAYIPNGK  90

Query  61   VLGLSKLARLAEMFSRRLQVQERLTKQVALAISEVLKPRGVGVVMESSHLCMVMRGVQKT  120
            V+GLSK+AR+ ++F+RRLQVQERLT Q+A A+ E+LKPRGV VV+E+ HLCM MRGV+K 
Sbjct  91   VIGLSKIARIVDIFARRLQVQERLTAQIADALQEILKPRGVAVVIEAEHLCMTMRGVRKP  150

Query  121  SSTTTTSCMLGCMRSSAKTREEFLTL  146
             S T TS   G  ++    R EFL L
Sbjct  151  GSKTVTSAFRGVFKTDPALRAEFLAL  176



Lambda      K        H        a         alpha
   0.324    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00037679

Length=1092
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  171     5e-49
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            127     4e-33


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 171 bits (436),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 76/284 (27%), Positives = 115/284 (40%), Gaps = 71/284 (25%)

Query  729   ESVIGAGTYGKVFKAIHVYTQRKVALKKIRMEGEKDGFPVTAVREIKLLQHLRNHNVVSL  788
                +G+G++G V+KA H  T + VA+KKI+ E  K       +REIK+L+ L + N+V L
Sbjct  4     LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  789   LEVMVERNECFMVFEYLSH-DLTGLINHPTFTLTAAHKKDLAKQMFDGLNYLHHRGVLHR  847
              +   +++  ++V EY+    L  L++      +    K + KQ+ +GL           
Sbjct  64    YDAFEDKDNLYLVLEYVEGGSLFDLLSE-KGAFSEREAKFIMKQILEGLE----------  112

Query  848   DIKAANILISNRGLLKFADFGLARFFSKSRQLDYTNRVITIWYRPPELLLGETRYGPAVD  907
                                               T  V T WY  PE+L G   YGP VD
Sbjct  113   -----------------------------SGSSLTTFVGTPWYMAPEVL-GGNPYGPKVD  142

Query  908   VWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWFELMRPTER  967
             VWS GC+  EL T K  FPG  G                              + +P   
Sbjct  143   VWSLGCILYELLTGKPPFPGINGNEIY-----------------------ELIIDQPYAF  179

Query  968   KKRVFEDIYREVLSPAALDLVSQIFRYDPTKRPSAEEVLTHPYF  1011
              +          LS  A DL+ ++ + DP+KR +A + L HP+F
Sbjct  180   PELPSN------LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 127 bits (321),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 56/291 (19%)

Query  731   VIGAGTYGKVFKAI----HVYTQRKVALKKIR---MEGEKDGFPVTAVREIKLLQHLRNH  783
              +G G +G+V+K         T+ KVA+K ++    E E++ F    + E  +++ L + 
Sbjct  6     KLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMKKLDHP  61

Query  784   NVVSLLEVMVERNECFMVFEYLSH-DL-TGLINHPTFTLTAAHKKDLAKQMFDGLNYLHH  841
             N+V LL V  +    ++V EY+   DL   L  H    LT      +A Q+  G+ YL  
Sbjct  62    NIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR-KLTLKDLLSMALQIAKGMEYLES  120

Query  842   RGVLHRDIKAANILISNRGLLKFADFGLARF-FSKSRQLDYTNRVITI-WYRPPELLLGE  899
             +  +HRD+ A N L+S   ++K +DFGL+R  +            + I W   PE L  +
Sbjct  121   KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLK-D  178

Query  900   TRYGPAVDVWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWF  959
              ++    DVWS G +  E+FT                     LG           E P+ 
Sbjct  179   GKFTSKSDVWSFGVLLWEIFT---------------------LG-----------EQPYP  206

Query  960   ELMRPTERKKRVFEDIYR---EVLSPAAL-DLVSQIFRYDPTKRPSAEEVL  1006
              +    E      ED YR       P  L DL+ Q + YDP  RP+  E++
Sbjct  207   GM--SNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELV  255



Lambda      K        H        a         alpha
   0.314    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1389256810


Query= TCONS_00037680

Length=1092
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  171     5e-49
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            127     4e-33


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 171 bits (436),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 76/284 (27%), Positives = 115/284 (40%), Gaps = 71/284 (25%)

Query  729   ESVIGAGTYGKVFKAIHVYTQRKVALKKIRMEGEKDGFPVTAVREIKLLQHLRNHNVVSL  788
                +G+G++G V+KA H  T + VA+KKI+ E  K       +REIK+L+ L + N+V L
Sbjct  4     LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  789   LEVMVERNECFMVFEYLSH-DLTGLINHPTFTLTAAHKKDLAKQMFDGLNYLHHRGVLHR  847
              +   +++  ++V EY+    L  L++      +    K + KQ+ +GL           
Sbjct  64    YDAFEDKDNLYLVLEYVEGGSLFDLLSE-KGAFSEREAKFIMKQILEGLE----------  112

Query  848   DIKAANILISNRGLLKFADFGLARFFSKSRQLDYTNRVITIWYRPPELLLGETRYGPAVD  907
                                               T  V T WY  PE+L G   YGP VD
Sbjct  113   -----------------------------SGSSLTTFVGTPWYMAPEVL-GGNPYGPKVD  142

Query  908   VWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWFELMRPTER  967
             VWS GC+  EL T K  FPG  G                              + +P   
Sbjct  143   VWSLGCILYELLTGKPPFPGINGNEIY-----------------------ELIIDQPYAF  179

Query  968   KKRVFEDIYREVLSPAALDLVSQIFRYDPTKRPSAEEVLTHPYF  1011
              +          LS  A DL+ ++ + DP+KR +A + L HP+F
Sbjct  180   PELPSN------LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 127 bits (321),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 56/291 (19%)

Query  731   VIGAGTYGKVFKAI----HVYTQRKVALKKIR---MEGEKDGFPVTAVREIKLLQHLRNH  783
              +G G +G+V+K         T+ KVA+K ++    E E++ F    + E  +++ L + 
Sbjct  6     KLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMKKLDHP  61

Query  784   NVVSLLEVMVERNECFMVFEYLSH-DL-TGLINHPTFTLTAAHKKDLAKQMFDGLNYLHH  841
             N+V LL V  +    ++V EY+   DL   L  H    LT      +A Q+  G+ YL  
Sbjct  62    NIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR-KLTLKDLLSMALQIAKGMEYLES  120

Query  842   RGVLHRDIKAANILISNRGLLKFADFGLARF-FSKSRQLDYTNRVITI-WYRPPELLLGE  899
             +  +HRD+ A N L+S   ++K +DFGL+R  +            + I W   PE L  +
Sbjct  121   KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLK-D  178

Query  900   TRYGPAVDVWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWF  959
              ++    DVWS G +  E+FT                     LG           E P+ 
Sbjct  179   GKFTSKSDVWSFGVLLWEIFT---------------------LG-----------EQPYP  206

Query  960   ELMRPTERKKRVFEDIYR---EVLSPAAL-DLVSQIFRYDPTKRPSAEEVL  1006
              +    E      ED YR       P  L DL+ Q + YDP  RP+  E++
Sbjct  207   GM--SNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELV  255



Lambda      K        H        a         alpha
   0.314    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1389256810


Query= TCONS_00037681

Length=1092
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  171     5e-49
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            127     4e-33


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 171 bits (436),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 76/284 (27%), Positives = 115/284 (40%), Gaps = 71/284 (25%)

Query  729   ESVIGAGTYGKVFKAIHVYTQRKVALKKIRMEGEKDGFPVTAVREIKLLQHLRNHNVVSL  788
                +G+G++G V+KA H  T + VA+KKI+ E  K       +REIK+L+ L + N+V L
Sbjct  4     LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  789   LEVMVERNECFMVFEYLSH-DLTGLINHPTFTLTAAHKKDLAKQMFDGLNYLHHRGVLHR  847
              +   +++  ++V EY+    L  L++      +    K + KQ+ +GL           
Sbjct  64    YDAFEDKDNLYLVLEYVEGGSLFDLLSE-KGAFSEREAKFIMKQILEGLE----------  112

Query  848   DIKAANILISNRGLLKFADFGLARFFSKSRQLDYTNRVITIWYRPPELLLGETRYGPAVD  907
                                               T  V T WY  PE+L G   YGP VD
Sbjct  113   -----------------------------SGSSLTTFVGTPWYMAPEVL-GGNPYGPKVD  142

Query  908   VWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWFELMRPTER  967
             VWS GC+  EL T K  FPG  G                              + +P   
Sbjct  143   VWSLGCILYELLTGKPPFPGINGNEIY-----------------------ELIIDQPYAF  179

Query  968   KKRVFEDIYREVLSPAALDLVSQIFRYDPTKRPSAEEVLTHPYF  1011
              +          LS  A DL+ ++ + DP+KR +A + L HP+F
Sbjct  180   PELPSN------LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 127 bits (321),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 56/291 (19%)

Query  731   VIGAGTYGKVFKAI----HVYTQRKVALKKIR---MEGEKDGFPVTAVREIKLLQHLRNH  783
              +G G +G+V+K         T+ KVA+K ++    E E++ F    + E  +++ L + 
Sbjct  6     KLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMKKLDHP  61

Query  784   NVVSLLEVMVERNECFMVFEYLSH-DL-TGLINHPTFTLTAAHKKDLAKQMFDGLNYLHH  841
             N+V LL V  +    ++V EY+   DL   L  H    LT      +A Q+  G+ YL  
Sbjct  62    NIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR-KLTLKDLLSMALQIAKGMEYLES  120

Query  842   RGVLHRDIKAANILISNRGLLKFADFGLARF-FSKSRQLDYTNRVITI-WYRPPELLLGE  899
             +  +HRD+ A N L+S   ++K +DFGL+R  +            + I W   PE L  +
Sbjct  121   KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLK-D  178

Query  900   TRYGPAVDVWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWF  959
              ++    DVWS G +  E+FT                     LG           E P+ 
Sbjct  179   GKFTSKSDVWSFGVLLWEIFT---------------------LG-----------EQPYP  206

Query  960   ELMRPTERKKRVFEDIYR---EVLSPAAL-DLVSQIFRYDPTKRPSAEEVL  1006
              +    E      ED YR       P  L DL+ Q + YDP  RP+  E++
Sbjct  207   GM--SNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELV  255



Lambda      K        H        a         alpha
   0.314    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1389256810


Query= TCONS_00043187

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0764    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00043188

Length=128


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.134    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91238898


Query= TCONS_00043189

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  170     1e-50
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            124     4e-33


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 170 bits (433),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 76/284 (27%), Positives = 115/284 (40%), Gaps = 71/284 (25%)

Query  143  ESVIGAGTYGKVFKAIHVYTQRKVALKKIRMEGEKDGFPVTAVREIKLLQHLRNHNVVSL  202
               +G+G++G V+KA H  T + VA+KKI+ E  K       +REIK+L+ L + N+V L
Sbjct  4    LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  203  LEVMVERNECFMVFEYLSH-DLTGLINHPTFTLTAAHKKDLAKQMFDGLNYLHHRGVLHR  261
             +   +++  ++V EY+    L  L++      +    K + KQ+ +GL           
Sbjct  64   YDAFEDKDNLYLVLEYVEGGSLFDLLSE-KGAFSEREAKFIMKQILEGLE----------  112

Query  262  DIKAANILISNRGLLKFADFGLARFFSKSRQLDYTNRVITIWYRPPELLLGETRYGPAVD  321
                                              T  V T WY  PE+L G   YGP VD
Sbjct  113  -----------------------------SGSSLTTFVGTPWYMAPEVL-GGNPYGPKVD  142

Query  322  VWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWFELMRPTER  381
            VWS GC+  EL T K  FPG  G                              + +P   
Sbjct  143  VWSLGCILYELLTGKPPFPGINGNEIY-----------------------ELIIDQPYAF  179

Query  382  KKRVFEDIYREVLSPAALDLVSQIFRYDPTKRPSAEEVLTHPYF  425
             +          LS  A DL+ ++ + DP+KR +A + L HP+F
Sbjct  180  PELPSN------LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 124 bits (314),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 56/291 (19%)

Query  145  VIGAGTYGKVFKAI----HVYTQRKVALKKIR---MEGEKDGFPVTAVREIKLLQHLRNH  197
             +G G +G+V+K         T+ KVA+K ++    E E++ F    + E  +++ L + 
Sbjct  6    KLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMKKLDHP  61

Query  198  NVVSLLEVMVERNECFMVFEYLSH-DL-TGLINHPTFTLTAAHKKDLAKQMFDGLNYLHH  255
            N+V LL V  +    ++V EY+   DL   L  H    LT      +A Q+  G+ YL  
Sbjct  62   NIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR-KLTLKDLLSMALQIAKGMEYLES  120

Query  256  RGVLHRDIKAANILISNRGLLKFADFGLARF-FSKSRQLDYTNRVITI-WYRPPELLLGE  313
            +  +HRD+ A N L+S   ++K +DFGL+R  +            + I W   PE L  +
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLK-D  178

Query  314  TRYGPAVDVWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWF  373
             ++    DVWS G +  E+FT                     LG           E P+ 
Sbjct  179  GKFTSKSDVWSFGVLLWEIFT---------------------LG-----------EQPYP  206

Query  374  ELMRPTERKKRVFEDIYR---EVLSPAAL-DLVSQIFRYDPTKRPSAEEVL  420
             +    E      ED YR       P  L DL+ Q + YDP  RP+  E++
Sbjct  207  GM--SNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELV  255



Lambda      K        H        a         alpha
   0.319    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00037682

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  170     1e-50
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            124     4e-33


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 170 bits (433),  Expect = 1e-50, Method: Composition-based stats.
 Identities = 76/284 (27%), Positives = 115/284 (40%), Gaps = 71/284 (25%)

Query  143  ESVIGAGTYGKVFKAIHVYTQRKVALKKIRMEGEKDGFPVTAVREIKLLQHLRNHNVVSL  202
               +G+G++G V+KA H  T + VA+KKI+ E  K       +REIK+L+ L + N+V L
Sbjct  4    LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  203  LEVMVERNECFMVFEYLSH-DLTGLINHPTFTLTAAHKKDLAKQMFDGLNYLHHRGVLHR  261
             +   +++  ++V EY+    L  L++      +    K + KQ+ +GL           
Sbjct  64   YDAFEDKDNLYLVLEYVEGGSLFDLLSE-KGAFSEREAKFIMKQILEGLE----------  112

Query  262  DIKAANILISNRGLLKFADFGLARFFSKSRQLDYTNRVITIWYRPPELLLGETRYGPAVD  321
                                              T  V T WY  PE+L G   YGP VD
Sbjct  113  -----------------------------SGSSLTTFVGTPWYMAPEVL-GGNPYGPKVD  142

Query  322  VWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWFELMRPTER  381
            VWS GC+  EL T K  FPG  G                              + +P   
Sbjct  143  VWSLGCILYELLTGKPPFPGINGNEIY-----------------------ELIIDQPYAF  179

Query  382  KKRVFEDIYREVLSPAALDLVSQIFRYDPTKRPSAEEVLTHPYF  425
             +          LS  A DL+ ++ + DP+KR +A + L HP+F
Sbjct  180  PELPSN------LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 124 bits (314),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 56/291 (19%)

Query  145  VIGAGTYGKVFKAI----HVYTQRKVALKKIR---MEGEKDGFPVTAVREIKLLQHLRNH  197
             +G G +G+V+K         T+ KVA+K ++    E E++ F    + E  +++ L + 
Sbjct  6    KLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMKKLDHP  61

Query  198  NVVSLLEVMVERNECFMVFEYLSH-DL-TGLINHPTFTLTAAHKKDLAKQMFDGLNYLHH  255
            N+V LL V  +    ++V EY+   DL   L  H    LT      +A Q+  G+ YL  
Sbjct  62   NIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR-KLTLKDLLSMALQIAKGMEYLES  120

Query  256  RGVLHRDIKAANILISNRGLLKFADFGLARF-FSKSRQLDYTNRVITI-WYRPPELLLGE  313
            +  +HRD+ A N L+S   ++K +DFGL+R  +            + I W   PE L  +
Sbjct  121  KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLK-D  178

Query  314  TRYGPAVDVWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWF  373
             ++    DVWS G +  E+FT                     LG           E P+ 
Sbjct  179  GKFTSKSDVWSFGVLLWEIFT---------------------LG-----------EQPYP  206

Query  374  ELMRPTERKKRVFEDIYR---EVLSPAAL-DLVSQIFRYDPTKRPSAEEVL  420
             +    E      ED YR       P  L DL+ Q + YDP  RP+  E++
Sbjct  207  GM--SNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELV  255



Lambda      K        H        a         alpha
   0.319    0.137    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00043190

Length=1023
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  171     5e-49
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            127     3e-33


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 171 bits (436),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 76/284 (27%), Positives = 115/284 (40%), Gaps = 71/284 (25%)

Query  729   ESVIGAGTYGKVFKAIHVYTQRKVALKKIRMEGEKDGFPVTAVREIKLLQHLRNHNVVSL  788
                +G+G++G V+KA H  T + VA+KKI+ E  K       +REIK+L+ L + N+V L
Sbjct  4     LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  789   LEVMVERNECFMVFEYLSH-DLTGLINHPTFTLTAAHKKDLAKQMFDGLNYLHHRGVLHR  847
              +   +++  ++V EY+    L  L++      +    K + KQ+ +GL           
Sbjct  64    YDAFEDKDNLYLVLEYVEGGSLFDLLSE-KGAFSEREAKFIMKQILEGLE----------  112

Query  848   DIKAANILISNRGLLKFADFGLARFFSKSRQLDYTNRVITIWYRPPELLLGETRYGPAVD  907
                                               T  V T WY  PE+L G   YGP VD
Sbjct  113   -----------------------------SGSSLTTFVGTPWYMAPEVL-GGNPYGPKVD  142

Query  908   VWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWFELMRPTER  967
             VWS GC+  EL T K  FPG  G                              + +P   
Sbjct  143   VWSLGCILYELLTGKPPFPGINGNEIY-----------------------ELIIDQPYAF  179

Query  968   KKRVFEDIYREVLSPAALDLVSQIFRYDPTKRPSAEEVLTHPYF  1011
              +          LS  A DL+ ++ + DP+KR +A + L HP+F
Sbjct  180   PELPSN------LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 127 bits (321),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 56/291 (19%)

Query  731   VIGAGTYGKVFKAI----HVYTQRKVALKKIR---MEGEKDGFPVTAVREIKLLQHLRNH  783
              +G G +G+V+K         T+ KVA+K ++    E E++ F    + E  +++ L + 
Sbjct  6     KLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMKKLDHP  61

Query  784   NVVSLLEVMVERNECFMVFEYLSH-DL-TGLINHPTFTLTAAHKKDLAKQMFDGLNYLHH  841
             N+V LL V  +    ++V EY+   DL   L  H    LT      +A Q+  G+ YL  
Sbjct  62    NIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR-KLTLKDLLSMALQIAKGMEYLES  120

Query  842   RGVLHRDIKAANILISNRGLLKFADFGLARF-FSKSRQLDYTNRVITI-WYRPPELLLGE  899
             +  +HRD+ A N L+S   ++K +DFGL+R  +            + I W   PE L  +
Sbjct  121   KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLK-D  178

Query  900   TRYGPAVDVWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWF  959
              ++    DVWS G +  E+FT                     LG           E P+ 
Sbjct  179   GKFTSKSDVWSFGVLLWEIFT---------------------LG-----------EQPYP  206

Query  960   ELMRPTERKKRVFEDIYR---EVLSPAAL-DLVSQIFRYDPTKRPSAEEVL  1006
              +    E      ED YR       P  L DL+ Q + YDP  RP+  E++
Sbjct  207   GM--SNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELV  255



Lambda      K        H        a         alpha
   0.315    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1312517052


Query= TCONS_00043192

Length=1023
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  171     5e-49
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            127     3e-33


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 171 bits (436),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 76/284 (27%), Positives = 115/284 (40%), Gaps = 71/284 (25%)

Query  729   ESVIGAGTYGKVFKAIHVYTQRKVALKKIRMEGEKDGFPVTAVREIKLLQHLRNHNVVSL  788
                +G+G++G V+KA H  T + VA+KKI+ E  K       +REIK+L+ L + N+V L
Sbjct  4     LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  789   LEVMVERNECFMVFEYLSH-DLTGLINHPTFTLTAAHKKDLAKQMFDGLNYLHHRGVLHR  847
              +   +++  ++V EY+    L  L++      +    K + KQ+ +GL           
Sbjct  64    YDAFEDKDNLYLVLEYVEGGSLFDLLSE-KGAFSEREAKFIMKQILEGLE----------  112

Query  848   DIKAANILISNRGLLKFADFGLARFFSKSRQLDYTNRVITIWYRPPELLLGETRYGPAVD  907
                                               T  V T WY  PE+L G   YGP VD
Sbjct  113   -----------------------------SGSSLTTFVGTPWYMAPEVL-GGNPYGPKVD  142

Query  908   VWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWFELMRPTER  967
             VWS GC+  EL T K  FPG  G                              + +P   
Sbjct  143   VWSLGCILYELLTGKPPFPGINGNEIY-----------------------ELIIDQPYAF  179

Query  968   KKRVFEDIYREVLSPAALDLVSQIFRYDPTKRPSAEEVLTHPYF  1011
              +          LS  A DL+ ++ + DP+KR +A + L HP+F
Sbjct  180   PELPSN------LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 127 bits (321),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 56/291 (19%)

Query  731   VIGAGTYGKVFKAI----HVYTQRKVALKKIR---MEGEKDGFPVTAVREIKLLQHLRNH  783
              +G G +G+V+K         T+ KVA+K ++    E E++ F    + E  +++ L + 
Sbjct  6     KLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMKKLDHP  61

Query  784   NVVSLLEVMVERNECFMVFEYLSH-DL-TGLINHPTFTLTAAHKKDLAKQMFDGLNYLHH  841
             N+V LL V  +    ++V EY+   DL   L  H    LT      +A Q+  G+ YL  
Sbjct  62    NIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR-KLTLKDLLSMALQIAKGMEYLES  120

Query  842   RGVLHRDIKAANILISNRGLLKFADFGLARF-FSKSRQLDYTNRVITI-WYRPPELLLGE  899
             +  +HRD+ A N L+S   ++K +DFGL+R  +            + I W   PE L  +
Sbjct  121   KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLK-D  178

Query  900   TRYGPAVDVWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWF  959
              ++    DVWS G +  E+FT                     LG           E P+ 
Sbjct  179   GKFTSKSDVWSFGVLLWEIFT---------------------LG-----------EQPYP  206

Query  960   ELMRPTERKKRVFEDIYR---EVLSPAAL-DLVSQIFRYDPTKRPSAEEVL  1006
              +    E      ED YR       P  L DL+ Q + YDP  RP+  E++
Sbjct  207   GM--SNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELV  255



Lambda      K        H        a         alpha
   0.315    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1312517052


Query= TCONS_00043191

Length=1023
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  171     5e-49
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            127     3e-33


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 171 bits (436),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 76/284 (27%), Positives = 115/284 (40%), Gaps = 71/284 (25%)

Query  729   ESVIGAGTYGKVFKAIHVYTQRKVALKKIRMEGEKDGFPVTAVREIKLLQHLRNHNVVSL  788
                +G+G++G V+KA H  T + VA+KKI+ E  K       +REIK+L+ L + N+V L
Sbjct  4     LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  789   LEVMVERNECFMVFEYLSH-DLTGLINHPTFTLTAAHKKDLAKQMFDGLNYLHHRGVLHR  847
              +   +++  ++V EY+    L  L++      +    K + KQ+ +GL           
Sbjct  64    YDAFEDKDNLYLVLEYVEGGSLFDLLSE-KGAFSEREAKFIMKQILEGLE----------  112

Query  848   DIKAANILISNRGLLKFADFGLARFFSKSRQLDYTNRVITIWYRPPELLLGETRYGPAVD  907
                                               T  V T WY  PE+L G   YGP VD
Sbjct  113   -----------------------------SGSSLTTFVGTPWYMAPEVL-GGNPYGPKVD  142

Query  908   VWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWFELMRPTER  967
             VWS GC+  EL T K  FPG  G                              + +P   
Sbjct  143   VWSLGCILYELLTGKPPFPGINGNEIY-----------------------ELIIDQPYAF  179

Query  968   KKRVFEDIYREVLSPAALDLVSQIFRYDPTKRPSAEEVLTHPYF  1011
              +          LS  A DL+ ++ + DP+KR +A + L HP+F
Sbjct  180   PELPSN------LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 127 bits (321),  Expect = 3e-33, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 56/291 (19%)

Query  731   VIGAGTYGKVFKAI----HVYTQRKVALKKIR---MEGEKDGFPVTAVREIKLLQHLRNH  783
              +G G +G+V+K         T+ KVA+K ++    E E++ F    + E  +++ L + 
Sbjct  6     KLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMKKLDHP  61

Query  784   NVVSLLEVMVERNECFMVFEYLSH-DL-TGLINHPTFTLTAAHKKDLAKQMFDGLNYLHH  841
             N+V LL V  +    ++V EY+   DL   L  H    LT      +A Q+  G+ YL  
Sbjct  62    NIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR-KLTLKDLLSMALQIAKGMEYLES  120

Query  842   RGVLHRDIKAANILISNRGLLKFADFGLARF-FSKSRQLDYTNRVITI-WYRPPELLLGE  899
             +  +HRD+ A N L+S   ++K +DFGL+R  +            + I W   PE L  +
Sbjct  121   KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLK-D  178

Query  900   TRYGPAVDVWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWF  959
              ++    DVWS G +  E+FT                     LG           E P+ 
Sbjct  179   GKFTSKSDVWSFGVLLWEIFT---------------------LG-----------EQPYP  206

Query  960   ELMRPTERKKRVFEDIYR---EVLSPAAL-DLVSQIFRYDPTKRPSAEEVL  1006
              +    E      ED YR       P  L DL+ Q + YDP  RP+  E++
Sbjct  207   GM--SNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELV  255



Lambda      K        H        a         alpha
   0.315    0.134    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1312517052


Query= TCONS_00037684

Length=1092
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  171     5e-49
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            127     4e-33


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 171 bits (436),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 76/284 (27%), Positives = 115/284 (40%), Gaps = 71/284 (25%)

Query  729   ESVIGAGTYGKVFKAIHVYTQRKVALKKIRMEGEKDGFPVTAVREIKLLQHLRNHNVVSL  788
                +G+G++G V+KA H  T + VA+KKI+ E  K       +REIK+L+ L + N+V L
Sbjct  4     LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  789   LEVMVERNECFMVFEYLSH-DLTGLINHPTFTLTAAHKKDLAKQMFDGLNYLHHRGVLHR  847
              +   +++  ++V EY+    L  L++      +    K + KQ+ +GL           
Sbjct  64    YDAFEDKDNLYLVLEYVEGGSLFDLLSE-KGAFSEREAKFIMKQILEGLE----------  112

Query  848   DIKAANILISNRGLLKFADFGLARFFSKSRQLDYTNRVITIWYRPPELLLGETRYGPAVD  907
                                               T  V T WY  PE+L G   YGP VD
Sbjct  113   -----------------------------SGSSLTTFVGTPWYMAPEVL-GGNPYGPKVD  142

Query  908   VWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWFELMRPTER  967
             VWS GC+  EL T K  FPG  G                              + +P   
Sbjct  143   VWSLGCILYELLTGKPPFPGINGNEIY-----------------------ELIIDQPYAF  179

Query  968   KKRVFEDIYREVLSPAALDLVSQIFRYDPTKRPSAEEVLTHPYF  1011
              +          LS  A DL+ ++ + DP+KR +A + L HP+F
Sbjct  180   PELPSN------LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 127 bits (321),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 56/291 (19%)

Query  731   VIGAGTYGKVFKAI----HVYTQRKVALKKIR---MEGEKDGFPVTAVREIKLLQHLRNH  783
              +G G +G+V+K         T+ KVA+K ++    E E++ F    + E  +++ L + 
Sbjct  6     KLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMKKLDHP  61

Query  784   NVVSLLEVMVERNECFMVFEYLSH-DL-TGLINHPTFTLTAAHKKDLAKQMFDGLNYLHH  841
             N+V LL V  +    ++V EY+   DL   L  H    LT      +A Q+  G+ YL  
Sbjct  62    NIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR-KLTLKDLLSMALQIAKGMEYLES  120

Query  842   RGVLHRDIKAANILISNRGLLKFADFGLARF-FSKSRQLDYTNRVITI-WYRPPELLLGE  899
             +  +HRD+ A N L+S   ++K +DFGL+R  +            + I W   PE L  +
Sbjct  121   KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLK-D  178

Query  900   TRYGPAVDVWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWF  959
              ++    DVWS G +  E+FT                     LG           E P+ 
Sbjct  179   GKFTSKSDVWSFGVLLWEIFT---------------------LG-----------EQPYP  206

Query  960   ELMRPTERKKRVFEDIYR---EVLSPAAL-DLVSQIFRYDPTKRPSAEEVL  1006
              +    E      ED YR       P  L DL+ Q + YDP  RP+  E++
Sbjct  207   GM--SNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELV  255



Lambda      K        H        a         alpha
   0.314    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1389256810


Query= TCONS_00037683

Length=1092
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  171     5e-49
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            127     4e-33


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 171 bits (436),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 76/284 (27%), Positives = 115/284 (40%), Gaps = 71/284 (25%)

Query  729   ESVIGAGTYGKVFKAIHVYTQRKVALKKIRMEGEKDGFPVTAVREIKLLQHLRNHNVVSL  788
                +G+G++G V+KA H  T + VA+KKI+ E  K       +REIK+L+ L + N+V L
Sbjct  4     LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  789   LEVMVERNECFMVFEYLSH-DLTGLINHPTFTLTAAHKKDLAKQMFDGLNYLHHRGVLHR  847
              +   +++  ++V EY+    L  L++      +    K + KQ+ +GL           
Sbjct  64    YDAFEDKDNLYLVLEYVEGGSLFDLLSE-KGAFSEREAKFIMKQILEGLE----------  112

Query  848   DIKAANILISNRGLLKFADFGLARFFSKSRQLDYTNRVITIWYRPPELLLGETRYGPAVD  907
                                               T  V T WY  PE+L G   YGP VD
Sbjct  113   -----------------------------SGSSLTTFVGTPWYMAPEVL-GGNPYGPKVD  142

Query  908   VWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWFELMRPTER  967
             VWS GC+  EL T K  FPG  G                              + +P   
Sbjct  143   VWSLGCILYELLTGKPPFPGINGNEIY-----------------------ELIIDQPYAF  179

Query  968   KKRVFEDIYREVLSPAALDLVSQIFRYDPTKRPSAEEVLTHPYF  1011
              +          LS  A DL+ ++ + DP+KR +A + L HP+F
Sbjct  180   PELPSN------LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 127 bits (321),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 56/291 (19%)

Query  731   VIGAGTYGKVFKAI----HVYTQRKVALKKIR---MEGEKDGFPVTAVREIKLLQHLRNH  783
              +G G +G+V+K         T+ KVA+K ++    E E++ F    + E  +++ L + 
Sbjct  6     KLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMKKLDHP  61

Query  784   NVVSLLEVMVERNECFMVFEYLSH-DL-TGLINHPTFTLTAAHKKDLAKQMFDGLNYLHH  841
             N+V LL V  +    ++V EY+   DL   L  H    LT      +A Q+  G+ YL  
Sbjct  62    NIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR-KLTLKDLLSMALQIAKGMEYLES  120

Query  842   RGVLHRDIKAANILISNRGLLKFADFGLARF-FSKSRQLDYTNRVITI-WYRPPELLLGE  899
             +  +HRD+ A N L+S   ++K +DFGL+R  +            + I W   PE L  +
Sbjct  121   KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLK-D  178

Query  900   TRYGPAVDVWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWF  959
              ++    DVWS G +  E+FT                     LG           E P+ 
Sbjct  179   GKFTSKSDVWSFGVLLWEIFT---------------------LG-----------EQPYP  206

Query  960   ELMRPTERKKRVFEDIYR---EVLSPAAL-DLVSQIFRYDPTKRPSAEEVL  1006
              +    E      ED YR       P  L DL+ Q + YDP  RP+  E++
Sbjct  207   GM--SNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELV  255



Lambda      K        H        a         alpha
   0.314    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1389256810


Query= TCONS_00037686

Length=1092
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  171     5e-49
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            127     4e-33


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 171 bits (436),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 76/284 (27%), Positives = 115/284 (40%), Gaps = 71/284 (25%)

Query  729   ESVIGAGTYGKVFKAIHVYTQRKVALKKIRMEGEKDGFPVTAVREIKLLQHLRNHNVVSL  788
                +G+G++G V+KA H  T + VA+KKI+ E  K       +REIK+L+ L + N+V L
Sbjct  4     LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  789   LEVMVERNECFMVFEYLSH-DLTGLINHPTFTLTAAHKKDLAKQMFDGLNYLHHRGVLHR  847
              +   +++  ++V EY+    L  L++      +    K + KQ+ +GL           
Sbjct  64    YDAFEDKDNLYLVLEYVEGGSLFDLLSE-KGAFSEREAKFIMKQILEGLE----------  112

Query  848   DIKAANILISNRGLLKFADFGLARFFSKSRQLDYTNRVITIWYRPPELLLGETRYGPAVD  907
                                               T  V T WY  PE+L G   YGP VD
Sbjct  113   -----------------------------SGSSLTTFVGTPWYMAPEVL-GGNPYGPKVD  142

Query  908   VWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWFELMRPTER  967
             VWS GC+  EL T K  FPG  G                              + +P   
Sbjct  143   VWSLGCILYELLTGKPPFPGINGNEIY-----------------------ELIIDQPYAF  179

Query  968   KKRVFEDIYREVLSPAALDLVSQIFRYDPTKRPSAEEVLTHPYF  1011
              +          LS  A DL+ ++ + DP+KR +A + L HP+F
Sbjct  180   PELPSN------LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 127 bits (321),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 56/291 (19%)

Query  731   VIGAGTYGKVFKAI----HVYTQRKVALKKIR---MEGEKDGFPVTAVREIKLLQHLRNH  783
              +G G +G+V+K         T+ KVA+K ++    E E++ F    + E  +++ L + 
Sbjct  6     KLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMKKLDHP  61

Query  784   NVVSLLEVMVERNECFMVFEYLSH-DL-TGLINHPTFTLTAAHKKDLAKQMFDGLNYLHH  841
             N+V LL V  +    ++V EY+   DL   L  H    LT      +A Q+  G+ YL  
Sbjct  62    NIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR-KLTLKDLLSMALQIAKGMEYLES  120

Query  842   RGVLHRDIKAANILISNRGLLKFADFGLARF-FSKSRQLDYTNRVITI-WYRPPELLLGE  899
             +  +HRD+ A N L+S   ++K +DFGL+R  +            + I W   PE L  +
Sbjct  121   KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLK-D  178

Query  900   TRYGPAVDVWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWF  959
              ++    DVWS G +  E+FT                     LG           E P+ 
Sbjct  179   GKFTSKSDVWSFGVLLWEIFT---------------------LG-----------EQPYP  206

Query  960   ELMRPTERKKRVFEDIYR---EVLSPAAL-DLVSQIFRYDPTKRPSAEEVL  1006
              +    E      ED YR       P  L DL+ Q + YDP  RP+  E++
Sbjct  207   GM--SNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELV  255



Lambda      K        H        a         alpha
   0.314    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1389256810


Query= TCONS_00043193

Length=1092
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  171     5e-49
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            127     4e-33


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 171 bits (436),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 76/284 (27%), Positives = 115/284 (40%), Gaps = 71/284 (25%)

Query  729   ESVIGAGTYGKVFKAIHVYTQRKVALKKIRMEGEKDGFPVTAVREIKLLQHLRNHNVVSL  788
                +G+G++G V+KA H  T + VA+KKI+ E  K       +REIK+L+ L + N+V L
Sbjct  4     LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  789   LEVMVERNECFMVFEYLSH-DLTGLINHPTFTLTAAHKKDLAKQMFDGLNYLHHRGVLHR  847
              +   +++  ++V EY+    L  L++      +    K + KQ+ +GL           
Sbjct  64    YDAFEDKDNLYLVLEYVEGGSLFDLLSE-KGAFSEREAKFIMKQILEGLE----------  112

Query  848   DIKAANILISNRGLLKFADFGLARFFSKSRQLDYTNRVITIWYRPPELLLGETRYGPAVD  907
                                               T  V T WY  PE+L G   YGP VD
Sbjct  113   -----------------------------SGSSLTTFVGTPWYMAPEVL-GGNPYGPKVD  142

Query  908   VWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWFELMRPTER  967
             VWS GC+  EL T K  FPG  G                              + +P   
Sbjct  143   VWSLGCILYELLTGKPPFPGINGNEIY-----------------------ELIIDQPYAF  179

Query  968   KKRVFEDIYREVLSPAALDLVSQIFRYDPTKRPSAEEVLTHPYF  1011
              +          LS  A DL+ ++ + DP+KR +A + L HP+F
Sbjct  180   PELPSN------LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 127 bits (321),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 56/291 (19%)

Query  731   VIGAGTYGKVFKAI----HVYTQRKVALKKIR---MEGEKDGFPVTAVREIKLLQHLRNH  783
              +G G +G+V+K         T+ KVA+K ++    E E++ F    + E  +++ L + 
Sbjct  6     KLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMKKLDHP  61

Query  784   NVVSLLEVMVERNECFMVFEYLSH-DL-TGLINHPTFTLTAAHKKDLAKQMFDGLNYLHH  841
             N+V LL V  +    ++V EY+   DL   L  H    LT      +A Q+  G+ YL  
Sbjct  62    NIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR-KLTLKDLLSMALQIAKGMEYLES  120

Query  842   RGVLHRDIKAANILISNRGLLKFADFGLARF-FSKSRQLDYTNRVITI-WYRPPELLLGE  899
             +  +HRD+ A N L+S   ++K +DFGL+R  +            + I W   PE L  +
Sbjct  121   KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLK-D  178

Query  900   TRYGPAVDVWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWF  959
              ++    DVWS G +  E+FT                     LG           E P+ 
Sbjct  179   GKFTSKSDVWSFGVLLWEIFT---------------------LG-----------EQPYP  206

Query  960   ELMRPTERKKRVFEDIYR---EVLSPAAL-DLVSQIFRYDPTKRPSAEEVL  1006
              +    E      ED YR       P  L DL+ Q + YDP  RP+  E++
Sbjct  207   GM--SNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELV  255



Lambda      K        H        a         alpha
   0.314    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1389256810


Query= TCONS_00037687

Length=1092
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  171     5e-49
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            127     4e-33


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 171 bits (436),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 76/284 (27%), Positives = 115/284 (40%), Gaps = 71/284 (25%)

Query  729   ESVIGAGTYGKVFKAIHVYTQRKVALKKIRMEGEKDGFPVTAVREIKLLQHLRNHNVVSL  788
                +G+G++G V+KA H  T + VA+KKI+ E  K       +REIK+L+ L + N+V L
Sbjct  4     LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  789   LEVMVERNECFMVFEYLSH-DLTGLINHPTFTLTAAHKKDLAKQMFDGLNYLHHRGVLHR  847
              +   +++  ++V EY+    L  L++      +    K + KQ+ +GL           
Sbjct  64    YDAFEDKDNLYLVLEYVEGGSLFDLLSE-KGAFSEREAKFIMKQILEGLE----------  112

Query  848   DIKAANILISNRGLLKFADFGLARFFSKSRQLDYTNRVITIWYRPPELLLGETRYGPAVD  907
                                               T  V T WY  PE+L G   YGP VD
Sbjct  113   -----------------------------SGSSLTTFVGTPWYMAPEVL-GGNPYGPKVD  142

Query  908   VWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWFELMRPTER  967
             VWS GC+  EL T K  FPG  G                              + +P   
Sbjct  143   VWSLGCILYELLTGKPPFPGINGNEIY-----------------------ELIIDQPYAF  179

Query  968   KKRVFEDIYREVLSPAALDLVSQIFRYDPTKRPSAEEVLTHPYF  1011
              +          LS  A DL+ ++ + DP+KR +A + L HP+F
Sbjct  180   PELPSN------LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 127 bits (321),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 56/291 (19%)

Query  731   VIGAGTYGKVFKAI----HVYTQRKVALKKIR---MEGEKDGFPVTAVREIKLLQHLRNH  783
              +G G +G+V+K         T+ KVA+K ++    E E++ F    + E  +++ L + 
Sbjct  6     KLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMKKLDHP  61

Query  784   NVVSLLEVMVERNECFMVFEYLSH-DL-TGLINHPTFTLTAAHKKDLAKQMFDGLNYLHH  841
             N+V LL V  +    ++V EY+   DL   L  H    LT      +A Q+  G+ YL  
Sbjct  62    NIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR-KLTLKDLLSMALQIAKGMEYLES  120

Query  842   RGVLHRDIKAANILISNRGLLKFADFGLARF-FSKSRQLDYTNRVITI-WYRPPELLLGE  899
             +  +HRD+ A N L+S   ++K +DFGL+R  +            + I W   PE L  +
Sbjct  121   KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLK-D  178

Query  900   TRYGPAVDVWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWF  959
              ++    DVWS G +  E+FT                     LG           E P+ 
Sbjct  179   GKFTSKSDVWSFGVLLWEIFT---------------------LG-----------EQPYP  206

Query  960   ELMRPTERKKRVFEDIYR---EVLSPAAL-DLVSQIFRYDPTKRPSAEEVL  1006
              +    E      ED YR       P  L DL+ Q + YDP  RP+  E++
Sbjct  207   GM--SNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELV  255



Lambda      K        H        a         alpha
   0.314    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1389256810


Query= TCONS_00043194

Length=1092
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459660 pfam00069, Pkinase, Protein kinase domain                  171     5e-49
CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase            127     4e-33


>CDD:459660 pfam00069, Pkinase, Protein kinase domain.  
Length=217

 Score = 171 bits (436),  Expect = 5e-49, Method: Composition-based stats.
 Identities = 76/284 (27%), Positives = 115/284 (40%), Gaps = 71/284 (25%)

Query  729   ESVIGAGTYGKVFKAIHVYTQRKVALKKIRMEGEKDGFPVTAVREIKLLQHLRNHNVVSL  788
                +G+G++G V+KA H  T + VA+KKI+ E  K       +REIK+L+ L + N+V L
Sbjct  4     LRKLGSGSFGTVYKAKHRDTGKIVAIKKIKKEKIKKKKDKNILREIKILKKLNHPNIVRL  63

Query  789   LEVMVERNECFMVFEYLSH-DLTGLINHPTFTLTAAHKKDLAKQMFDGLNYLHHRGVLHR  847
              +   +++  ++V EY+    L  L++      +    K + KQ+ +GL           
Sbjct  64    YDAFEDKDNLYLVLEYVEGGSLFDLLSE-KGAFSEREAKFIMKQILEGLE----------  112

Query  848   DIKAANILISNRGLLKFADFGLARFFSKSRQLDYTNRVITIWYRPPELLLGETRYGPAVD  907
                                               T  V T WY  PE+L G   YGP VD
Sbjct  113   -----------------------------SGSSLTTFVGTPWYMAPEVL-GGNPYGPKVD  142

Query  908   VWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWFELMRPTER  967
             VWS GC+  EL T K  FPG  G                              + +P   
Sbjct  143   VWSLGCILYELLTGKPPFPGINGNEIY-----------------------ELIIDQPYAF  179

Query  968   KKRVFEDIYREVLSPAALDLVSQIFRYDPTKRPSAEEVLTHPYF  1011
              +          LS  A DL+ ++ + DP+KR +A + L HP+F
Sbjct  180   PELPSN------LSEEAKDLLKKLLKKDPSKRLTATQALQHPWF  217


>CDD:462242 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.  
Length=258

 Score = 127 bits (321),  Expect = 4e-33, Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 125/291 (43%), Gaps = 56/291 (19%)

Query  731   VIGAGTYGKVFKAI----HVYTQRKVALKKIR---MEGEKDGFPVTAVREIKLLQHLRNH  783
              +G G +G+V+K         T+ KVA+K ++    E E++ F    + E  +++ L + 
Sbjct  6     KLGEGAFGEVYKGTLKGEGENTKIKVAVKTLKEGADEEEREDF----LEEASIMKKLDHP  61

Query  784   NVVSLLEVMVERNECFMVFEYLSH-DL-TGLINHPTFTLTAAHKKDLAKQMFDGLNYLHH  841
             N+V LL V  +    ++V EY+   DL   L  H    LT      +A Q+  G+ YL  
Sbjct  62    NIVKLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHKR-KLTLKDLLSMALQIAKGMEYLES  120

Query  842   RGVLHRDIKAANILISNRGLLKFADFGLARF-FSKSRQLDYTNRVITI-WYRPPELLLGE  899
             +  +HRD+ A N L+S   ++K +DFGL+R  +            + I W   PE L  +
Sbjct  121   KNFVHRDLAARNCLVSENLVVKISDFGLSRDIYDDDYYRKRGGGKLPIKWM-APESLK-D  178

Query  900   TRYGPAVDVWSAGCVFVELFTKKAVFPGEGGEISQLEKLYASLGTPTRAEWPDLVEMPWF  959
              ++    DVWS G +  E+FT                     LG           E P+ 
Sbjct  179   GKFTSKSDVWSFGVLLWEIFT---------------------LG-----------EQPYP  206

Query  960   ELMRPTERKKRVFEDIYR---EVLSPAAL-DLVSQIFRYDPTKRPSAEEVL  1006
              +    E      ED YR       P  L DL+ Q + YDP  RP+  E++
Sbjct  207   GM--SNEEVLEFLEDGYRLPQPENCPDELYDLMKQCWAYDPEDRPTFSELV  255



Lambda      K        H        a         alpha
   0.314    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1389256810


Query= TCONS_00037689

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460281 pfam01652, IF4E, Eukaryotic initiation factor 4E           229     4e-77


>CDD:460281 pfam01652, IF4E, Eukaryotic initiation factor 4E.  
Length=158

 Score = 229 bits (586),  Expect = 4e-77, Method: Composition-based stats.
 Identities = 78/140 (56%), Positives = 100/140 (71%), Gaps = 3/140 (2%)

Query  131  LKSTWVIWYRPPTPKYSDYEKSTIPLASISSVESFWSIYTHLKRPSLLPTVSDYHIFKKG  190
            L++TW +WY     K   YE +   + +  +VE FWS+Y H+K PS LP  SDYH+FK+G
Sbjct  2    LQNTWTLWYDTKPDKSKSYEDNLKKIGTFDTVEDFWSLYNHIKPPSELPPGSDYHLFKEG  61

Query  191  IRPVWEDDANKKGGKWIVRLKK-GVADRYWEDLLLAMIGDQFAEASDEVCGAVLSVRSGE  249
            I+P+WED ANK GGKWI+RLKK G+ DR WEDLLLA+IG+QF E SDE+CGAV+SVR  E
Sbjct  62   IKPMWEDPANKNGGKWIIRLKKKGLLDRLWEDLLLALIGEQFDEDSDEICGAVVSVRKKE  121

Query  250  DVLSVWTR--IDGGRNIKIR  267
            D +S+WTR   D    +KI 
Sbjct  122  DKISIWTRDASDEEAVLKIG  141



Lambda      K        H        a         alpha
   0.311    0.129    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0665    0.140     1.90     42.6     43.6 

Effective search space used: 297004708


Query= TCONS_00043195

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460281 pfam01652, IF4E, Eukaryotic initiation factor 4E           227     2e-76


>CDD:460281 pfam01652, IF4E, Eukaryotic initiation factor 4E.  
Length=158

 Score = 227 bits (582),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 78/140 (56%), Positives = 100/140 (71%), Gaps = 3/140 (2%)

Query  139  LKSTWVIWYRPPTPKYSDYEKSTIPLASISSVESFWSIYTHLKRPSLLPTVSDYHIFKKG  198
            L++TW +WY     K   YE +   + +  +VE FWS+Y H+K PS LP  SDYH+FK+G
Sbjct  2    LQNTWTLWYDTKPDKSKSYEDNLKKIGTFDTVEDFWSLYNHIKPPSELPPGSDYHLFKEG  61

Query  199  IRPVWEDDANKKGGKWIVRLKK-GVADRYWEDLLLAMIGDQFAEASDEVCGAVLSVRSGE  257
            I+P+WED ANK GGKWI+RLKK G+ DR WEDLLLA+IG+QF E SDE+CGAV+SVR  E
Sbjct  62   IKPMWEDPANKNGGKWIIRLKKKGLLDRLWEDLLLALIGEQFDEDSDEICGAVVSVRKKE  121

Query  258  DVLSVWTR--IDGGRNIKIR  275
            D +S+WTR   D    +KI 
Sbjct  122  DKISIWTRDASDEEAVLKIG  141



Lambda      K        H        a         alpha
   0.311    0.128    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 304716384


Query= TCONS_00037690

Length=310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460281 pfam01652, IF4E, Eukaryotic initiation factor 4E           247     2e-83


>CDD:460281 pfam01652, IF4E, Eukaryotic initiation factor 4E.  
Length=158

 Score = 247 bits (632),  Expect = 2e-83, Method: Composition-based stats.
 Identities = 83/157 (53%), Positives = 110/157 (70%), Gaps = 3/157 (2%)

Query  131  LKSTWVIWYRPPTPKYSDYEKSTIPLASISSVESFWSIYTHLKRPSLLPTVSDYHIFKKG  190
            L++TW +WY     K   YE +   + +  +VE FWS+Y H+K PS LP  SDYH+FK+G
Sbjct  2    LQNTWTLWYDTKPDKSKSYEDNLKKIGTFDTVEDFWSLYNHIKPPSELPPGSDYHLFKEG  61

Query  191  IRPVWEDDANKKGGKWIVRLKK-GVADRYWEDLLLAMIGDQFAEASDEVCGAVLSVRSGE  249
            I+P+WED ANK GGKWI+RLKK G+ DR WEDLLLA+IG+QF E SDE+CGAV+SVR  E
Sbjct  62   IKPMWEDPANKNGGKWIIRLKKKGLLDRLWEDLLLALIGEQFDEDSDEICGAVVSVRKKE  121

Query  250  DVLSVWTR--IDGGRNIKIRETIKRLLAFPADTNIVW  284
            D +S+WTR   D    +KI + +K +L  P +T I +
Sbjct  122  DKISIWTRDASDEEAVLKIGKKLKEVLGLPPNTKIEY  158



Lambda      K        H        a         alpha
   0.311    0.128    0.378    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 355153814


Query= TCONS_00037691

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460281 pfam01652, IF4E, Eukaryotic initiation factor 4E           247     3e-83


>CDD:460281 pfam01652, IF4E, Eukaryotic initiation factor 4E.  
Length=158

 Score = 247 bits (632),  Expect = 3e-83, Method: Composition-based stats.
 Identities = 83/157 (53%), Positives = 110/157 (70%), Gaps = 3/157 (2%)

Query  120  LKSTWVIWYRPPTPKYSDYEKSTIPLASISSVESFWSIYTHLKRPSLLPTVSDYHIFKKG  179
            L++TW +WY     K   YE +   + +  +VE FWS+Y H+K PS LP  SDYH+FK+G
Sbjct  2    LQNTWTLWYDTKPDKSKSYEDNLKKIGTFDTVEDFWSLYNHIKPPSELPPGSDYHLFKEG  61

Query  180  IRPVWEDDANKKGGKWIVRLKK-GVADRYWEDLLLAMIGDQFAEASDEVCGAVLSVRSGE  238
            I+P+WED ANK GGKWI+RLKK G+ DR WEDLLLA+IG+QF E SDE+CGAV+SVR  E
Sbjct  62   IKPMWEDPANKNGGKWIIRLKKKGLLDRLWEDLLLALIGEQFDEDSDEICGAVVSVRKKE  121

Query  239  DVLSVWTR--IDGGRNIKIRETIKRLLAFPADTNIVW  273
            D +S+WTR   D    +KI + +K +L  P +T I +
Sbjct  122  DKISIWTRDASDEEAVLKIGKKLKEVLGLPPNTKIEY  158



Lambda      K        H        a         alpha
   0.312    0.128    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 383820938


Query= TCONS_00037692

Length=1207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397169 pfam02902, Peptidase_C48, Ulp1 protease family, C-term...  79.0    5e-17


>CDD:397169 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic 
domain.  This domain contains the catalytic triad Cys-His-Asn.
Length=202

 Score = 79.0 bits (195),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 7/94 (7%)

Query  647  EFLNDNLIGFYIRFLEDHLERNNKEVSQRVYFFNSYFFATLTNLPRGKQGI---NYQGVQ  703
            E+LND +I FY++ L   LE  + + ++RV+F NS+F++ LT+    K G     Y GV+
Sbjct  1    EWLNDTVIDFYLKLLAHRLESEDYK-NERVHFLNSFFYSKLTSKVSFKWGKKKDFYNGVR  59

Query  704  KWTRNV--DIFSYDYIVVPINEAA-HWYVAIICN  734
            +WTR     +F  D I +PIN    HW + II  
Sbjct  60   RWTRKNKKWLFDVDIIYIPINWDGKHWVLLIINL  93



Lambda      K        H        a         alpha
   0.310    0.127    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1549824180


Query= TCONS_00043196

Length=816


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.129    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1050619744


Query= TCONS_00037693

Length=1302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397169 pfam02902, Peptidase_C48, Ulp1 protease family, C-term...  79.0    5e-17


>CDD:397169 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic 
domain.  This domain contains the catalytic triad Cys-His-Asn.
Length=202

 Score = 79.0 bits (195),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 7/94 (7%)

Query  742  EFLNDNLIGFYIRFLEDHLERNNKEVSQRVYFFNSYFFATLTNLPRGKQGI---NYQGVQ  798
            E+LND +I FY++ L   LE  + + ++RV+F NS+F++ LT+    K G     Y GV+
Sbjct  1    EWLNDTVIDFYLKLLAHRLESEDYK-NERVHFLNSFFYSKLTSKVSFKWGKKKDFYNGVR  59

Query  799  KWTRNV--DIFSYDYIVVPINEAA-HWYVAIICN  829
            +WTR     +F  D I +PIN    HW + II  
Sbjct  60   RWTRKNKKWLFDVDIIYIPINWDGKHWVLLIINL  93



Lambda      K        H        a         alpha
   0.310    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1657426400


Query= TCONS_00043197

Length=1302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397169 pfam02902, Peptidase_C48, Ulp1 protease family, C-term...  79.0    5e-17


>CDD:397169 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic 
domain.  This domain contains the catalytic triad Cys-His-Asn.
Length=202

 Score = 79.0 bits (195),  Expect = 5e-17, Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 7/94 (7%)

Query  742  EFLNDNLIGFYIRFLEDHLERNNKEVSQRVYFFNSYFFATLTNLPRGKQGI---NYQGVQ  798
            E+LND +I FY++ L   LE  + + ++RV+F NS+F++ LT+    K G     Y GV+
Sbjct  1    EWLNDTVIDFYLKLLAHRLESEDYK-NERVHFLNSFFYSKLTSKVSFKWGKKKDFYNGVR  59

Query  799  KWTRNV--DIFSYDYIVVPINEAA-HWYVAIICN  829
            +WTR     +F  D I +PIN    HW + II  
Sbjct  60   RWTRKNKKWLFDVDIIYIPINWDGKHWVLLIINL  93



Lambda      K        H        a         alpha
   0.310    0.128    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1657426400


Query= TCONS_00037694

Length=266


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.130    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 295372814


Query= TCONS_00037695

Length=634
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397169 pfam02902, Peptidase_C48, Ulp1 protease family, C-term...  79.0    2e-17


>CDD:397169 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic 
domain.  This domain contains the catalytic triad Cys-His-Asn.
Length=202

 Score = 79.0 bits (195),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 7/94 (7%)

Query  74   EFLNDNLIGFYIRFLEDHLERNNKEVSQRVYFFNSYFFATLTNLPRGKQGI---NYQGVQ  130
            E+LND +I FY++ L   LE  + + ++RV+F NS+F++ LT+    K G     Y GV+
Sbjct  1    EWLNDTVIDFYLKLLAHRLESEDYK-NERVHFLNSFFYSKLTSKVSFKWGKKKDFYNGVR  59

Query  131  KWTRNV--DIFSYDYIVVPINEAA-HWYVAIICN  161
            +WTR     +F  D I +PIN    HW + II  
Sbjct  60   RWTRKNKKWLFDVDIIYIPINWDGKHWVLLIINL  93



Lambda      K        H        a         alpha
   0.311    0.129    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 797861390


Query= TCONS_00043198

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00043199

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00037696

Length=581
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      271     3e-87


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 271 bits (694),  Expect = 3e-87, Method: Composition-based stats.
 Identities = 104/306 (34%), Positives = 152/306 (50%), Gaps = 22/306 (7%)

Query  218  VGLKNQGATCYLNSLLQSLYFTNAFRKAVYQIPTEAEATRDNS----AWTLQRLFYNLQ-  272
             GL N G TCY+NS+LQSL+    FR  + +I   +E +R N        L+ LF  LQ 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  273  -TSESSVSTTELTASFGWESRQ--IFEQQDVQELSRKLMERLEEKMKA---TPVEKALPG  326
             +  SSVS      S G  +     ++QQD QE    L++ L E +     T  E  +  
Sbjct  61   NSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLITD  120

Query  327  LFVGKTKTYISCINVDYESSRVEDFWDIQLNVRGNKT------LDDSFKDYIQVETLEGE  380
            LF G+ K+ + C++    S   E F D+ L + G+        L   F  + ++E L+ E
Sbjct  121  LFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDE  180

Query  381  NKYDAGSPYGLQDAKKGVIFESFPPVLHLHLKRFEYDINRDAMMKINDRHAFPMEFDATP  440
             KY        QDA K +     PPVL +HLKRF Y  NR    K+N    FP+E D + 
Sbjct  181  EKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSY--NRSTWEKLNTEVEFPLELDLSR  238

Query  441  YLSDAADKSEP--WIYQLHGVLVHSGDLNAGHYYAFLKPTKDGHWFKFDDDRVTRAT-DK  497
            YL++           Y+L  V+VHSG L++GHY A++K  ++  W+KFDD++VT    + 
Sbjct  239  YLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEET  298

Query  498  EVLEEN  503
             VL  +
Sbjct  299  AVLSSS  304



Lambda      K        H        a         alpha
   0.318    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00037697

Length=1123
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiqu...  366     2e-119
CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-term...  280     3e-88 
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      272     2e-83 


>CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiquitin-specific 
protease 7.  This domain is one of two C-terminal domains 
on the much longer ubiquitin-specific proteases. This particular 
one is found to interact with the herpesvirus 1 trans-acting 
transcriptional protein ICP0/VMW110.
Length=239

 Score = 366 bits (941),  Expect = 2e-119, Method: Composition-based stats.
 Identities = 124/250 (50%), Positives = 162/250 (65%), Gaps = 13/250 (5%)

Query  645  IRLWVMVNRQNKTTRPDQAIKDPEM--TVEEAYSRFGTKGNPFKVWMEVGQPSADGTISW  702
            IRLW MVNRQNKT RPDQ + + +   TVEE   +  T+ NP ++++EV +         
Sbjct  1    IRLWPMVNRQNKTVRPDQPLPEADPAKTVEEIRDKMATRDNPLRLFLEVAEELPP-----  55

Query  703  PDSSTSVLVFLKNFDVPSQTLSGVGTVYVRKNQKVAELAPTILEKMNWPAGTEFMLFEEI  762
             D +  +L+FLK +D   QTL GVG VYV K+ KV++L P I E+M WP  T  +L+EEI
Sbjct  56   FDKNDDILLFLKYYDPEKQTLRGVGHVYVPKSSKVSDLVPIINERMGWPPDTPLLLYEEI  115

Query  763  KHNMIDVMKPKQTFQQSEIQDGDIITFQRTVKESDLPSTALYTEARQYYDYLLNRINITF  822
            K NMI++MKPKQT ++SE+QDGDII FQR + E +      Y  A+ YYD+LLNR+ +TF
Sbjct  116  KPNMIEIMKPKQTLKKSELQDGDIICFQRELSEKE---QDEYPTAKDYYDFLLNRVEVTF  172

Query  823  APIKATDGDEFTLTLSRKMTYDQFSKKVGEHLNVESTHLRFAPVLASTGKPKQFIKRNPN  882
             P    +   FTL LS+KMTYDQ ++KV E L V+ T LRF  V   +G+PK  IKRNP 
Sbjct  173  RPKDNPNDPGFTLELSKKMTYDQLAEKVAERLGVDPTKLRFTTVNNYSGQPKTPIKRNP-  231

Query  883  QANQTLYHIL  892
              NQTL  IL
Sbjct  232  --NQTLKDIL  239


>CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-terminal.  
This C-terminal domain on many long ubiquitin-specific proteases 
has no known function.
Length=204

 Score = 280 bits (720),  Expect = 3e-88, Method: Composition-based stats.
 Identities = 112/206 (54%), Positives = 150/206 (73%), Gaps = 4/206 (2%)

Query  908   ALYYEVLETSLSDYESKTTLKVTLLTEGIVKEQLFEVLVPRDGTFADLLAGLQKKANLED  967
             ALYYEVL+ SLS+ E+K ++KVT L+ G+ KE+  E+LVP++GT ADLL  LQKK  L +
Sbjct  1     ALYYEVLDISLSELENKKSIKVTWLSPGLKKEEELELLVPKNGTVADLLEELQKKVKLSE  60

Query  968   DVVREMRIFEAHSGKIYKEYQEDAKIAGINEYVTLYAERIPEEELQMQAGERTINAFNFD  1027
             +   ++R++E  + KIYKE  ED  I  +N+Y+TLYAE IPEEEL +  GER I  F+F 
Sbjct  61    EGSGKIRLYEVSNHKIYKELSEDEPIDSLNDYLTLYAEEIPEEELNLDEGERLIPVFHFQ  120

Query  1028  REPSRPHGIPFKFVMKPGEIFKETKERLSKRTGIKGKQFEKIKFAVVPKSLYSNPRYLDD  1087
             +EPSR HGIPF FV+KPGE F +TK+RL KR G+  K+FEKIKFA+V +     P YL+D
Sbjct  121   KEPSRTHGIPFLFVLKPGEPFSDTKKRLQKRLGLPDKEFEKIKFALVQRG--KKPEYLED  178

Query  1088  DDILSDIVGESDD--MLGLDHVNKSR  1111
             DD+L D++G+ DD   LGLDH +K+ 
Sbjct  179   DDVLFDLLGQPDDLPWLGLDHPDKTP  204


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 272 bits (696),  Expect = 2e-83, Method: Composition-based stats.
 Identities = 104/306 (34%), Positives = 152/306 (50%), Gaps = 22/306 (7%)

Query  218  VGLKNQGATCYLNSLLQSLYFTNAFRKAVYQIPTEAEATRDNS----AWTLQRLFYNLQ-  272
             GL N G TCY+NS+LQSL+    FR  + +I   +E +R N        L+ LF  LQ 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  273  -TSESSVSTTELTASFGWESRQ--IFEQQDVQELSRKLMERLEEKMKA---TPVEKALPG  326
             +  SSVS      S G  +     ++QQD QE    L++ L E +     T  E  +  
Sbjct  61   NSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLITD  120

Query  327  LFVGKTKTYISCINVDYESSRVEDFWDIQLNVRGNKT------LDDSFKDYIQVETLEGE  380
            LF G+ K+ + C++    S   E F D+ L + G+        L   F  + ++E L+ E
Sbjct  121  LFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDE  180

Query  381  NKYDAGSPYGLQDAKKGVIFESFPPVLHLHLKRFEYDINRDAMMKINDRHAFPMEFDATP  440
             KY        QDA K +     PPVL +HLKRF Y  NR    K+N    FP+E D + 
Sbjct  181  EKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSY--NRSTWEKLNTEVEFPLELDLSR  238

Query  441  YLSDAADKSEP--WIYQLHGVLVHSGDLNAGHYYAFLKPTKDGHWFKFDDDRVTRAT-DK  497
            YL++           Y+L  V+VHSG L++GHY A++K  ++  W+KFDD++VT    + 
Sbjct  239  YLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEET  298

Query  498  EVLEEN  503
             VL  +
Sbjct  299  AVLSSS  304



Lambda      K        H        a         alpha
   0.317    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1432540188


Query= TCONS_00037698

Length=1123
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiqu...  366     2e-119
CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-term...  280     3e-88 
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      272     2e-83 


>CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiquitin-specific 
protease 7.  This domain is one of two C-terminal domains 
on the much longer ubiquitin-specific proteases. This particular 
one is found to interact with the herpesvirus 1 trans-acting 
transcriptional protein ICP0/VMW110.
Length=239

 Score = 366 bits (941),  Expect = 2e-119, Method: Composition-based stats.
 Identities = 124/250 (50%), Positives = 162/250 (65%), Gaps = 13/250 (5%)

Query  645  IRLWVMVNRQNKTTRPDQAIKDPEM--TVEEAYSRFGTKGNPFKVWMEVGQPSADGTISW  702
            IRLW MVNRQNKT RPDQ + + +   TVEE   +  T+ NP ++++EV +         
Sbjct  1    IRLWPMVNRQNKTVRPDQPLPEADPAKTVEEIRDKMATRDNPLRLFLEVAEELPP-----  55

Query  703  PDSSTSVLVFLKNFDVPSQTLSGVGTVYVRKNQKVAELAPTILEKMNWPAGTEFMLFEEI  762
             D +  +L+FLK +D   QTL GVG VYV K+ KV++L P I E+M WP  T  +L+EEI
Sbjct  56   FDKNDDILLFLKYYDPEKQTLRGVGHVYVPKSSKVSDLVPIINERMGWPPDTPLLLYEEI  115

Query  763  KHNMIDVMKPKQTFQQSEIQDGDIITFQRTVKESDLPSTALYTEARQYYDYLLNRINITF  822
            K NMI++MKPKQT ++SE+QDGDII FQR + E +      Y  A+ YYD+LLNR+ +TF
Sbjct  116  KPNMIEIMKPKQTLKKSELQDGDIICFQRELSEKE---QDEYPTAKDYYDFLLNRVEVTF  172

Query  823  APIKATDGDEFTLTLSRKMTYDQFSKKVGEHLNVESTHLRFAPVLASTGKPKQFIKRNPN  882
             P    +   FTL LS+KMTYDQ ++KV E L V+ T LRF  V   +G+PK  IKRNP 
Sbjct  173  RPKDNPNDPGFTLELSKKMTYDQLAEKVAERLGVDPTKLRFTTVNNYSGQPKTPIKRNP-  231

Query  883  QANQTLYHIL  892
              NQTL  IL
Sbjct  232  --NQTLKDIL  239


>CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-terminal.  
This C-terminal domain on many long ubiquitin-specific proteases 
has no known function.
Length=204

 Score = 280 bits (720),  Expect = 3e-88, Method: Composition-based stats.
 Identities = 112/206 (54%), Positives = 150/206 (73%), Gaps = 4/206 (2%)

Query  908   ALYYEVLETSLSDYESKTTLKVTLLTEGIVKEQLFEVLVPRDGTFADLLAGLQKKANLED  967
             ALYYEVL+ SLS+ E+K ++KVT L+ G+ KE+  E+LVP++GT ADLL  LQKK  L +
Sbjct  1     ALYYEVLDISLSELENKKSIKVTWLSPGLKKEEELELLVPKNGTVADLLEELQKKVKLSE  60

Query  968   DVVREMRIFEAHSGKIYKEYQEDAKIAGINEYVTLYAERIPEEELQMQAGERTINAFNFD  1027
             +   ++R++E  + KIYKE  ED  I  +N+Y+TLYAE IPEEEL +  GER I  F+F 
Sbjct  61    EGSGKIRLYEVSNHKIYKELSEDEPIDSLNDYLTLYAEEIPEEELNLDEGERLIPVFHFQ  120

Query  1028  REPSRPHGIPFKFVMKPGEIFKETKERLSKRTGIKGKQFEKIKFAVVPKSLYSNPRYLDD  1087
             +EPSR HGIPF FV+KPGE F +TK+RL KR G+  K+FEKIKFA+V +     P YL+D
Sbjct  121   KEPSRTHGIPFLFVLKPGEPFSDTKKRLQKRLGLPDKEFEKIKFALVQRG--KKPEYLED  178

Query  1088  DDILSDIVGESDD--MLGLDHVNKSR  1111
             DD+L D++G+ DD   LGLDH +K+ 
Sbjct  179   DDVLFDLLGQPDDLPWLGLDHPDKTP  204


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 272 bits (696),  Expect = 2e-83, Method: Composition-based stats.
 Identities = 104/306 (34%), Positives = 152/306 (50%), Gaps = 22/306 (7%)

Query  218  VGLKNQGATCYLNSLLQSLYFTNAFRKAVYQIPTEAEATRDNS----AWTLQRLFYNLQ-  272
             GL N G TCY+NS+LQSL+    FR  + +I   +E +R N        L+ LF  LQ 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  273  -TSESSVSTTELTASFGWESRQ--IFEQQDVQELSRKLMERLEEKMKA---TPVEKALPG  326
             +  SSVS      S G  +     ++QQD QE    L++ L E +     T  E  +  
Sbjct  61   NSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLITD  120

Query  327  LFVGKTKTYISCINVDYESSRVEDFWDIQLNVRGNKT------LDDSFKDYIQVETLEGE  380
            LF G+ K+ + C++    S   E F D+ L + G+        L   F  + ++E L+ E
Sbjct  121  LFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDE  180

Query  381  NKYDAGSPYGLQDAKKGVIFESFPPVLHLHLKRFEYDINRDAMMKINDRHAFPMEFDATP  440
             KY        QDA K +     PPVL +HLKRF Y  NR    K+N    FP+E D + 
Sbjct  181  EKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSY--NRSTWEKLNTEVEFPLELDLSR  238

Query  441  YLSDAADKSEP--WIYQLHGVLVHSGDLNAGHYYAFLKPTKDGHWFKFDDDRVTRAT-DK  497
            YL++           Y+L  V+VHSG L++GHY A++K  ++  W+KFDD++VT    + 
Sbjct  239  YLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEET  298

Query  498  EVLEEN  503
             VL  +
Sbjct  299  AVLSSS  304



Lambda      K        H        a         alpha
   0.317    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1432540188


Query= TCONS_00043202

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      268     4e-89


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 268 bits (688),  Expect = 4e-89, Method: Composition-based stats.
 Identities = 104/306 (34%), Positives = 152/306 (50%), Gaps = 22/306 (7%)

Query  2    VGLKNQGATCYLNSLLQSLYFTNAFRKAVYQIPTEAEATRDNS----AWTLQRLFYNLQ-  56
             GL N G TCY+NS+LQSL+    FR  + +I   +E +R N        L+ LF  LQ 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  57   -TSESSVSTTELTASFGWESRQ--IFEQQDVQELSRKLMERLEEKMKA---TPVEKALPG  110
             +  SSVS      S G  +     ++QQD QE    L++ L E +     T  E  +  
Sbjct  61   NSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLITD  120

Query  111  LFVGKTKTYISCINVDYESSRVEDFWDIQLNVRGNKT------LDDSFKDYIQVETLEGE  164
            LF G+ K+ + C++    S   E F D+ L + G+        L   F  + ++E L+ E
Sbjct  121  LFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDE  180

Query  165  NKYDAGSPYGLQDAKKGVIFESFPPVLHLHLKRFEYDINRDAMMKINDRHAFPMEFDATP  224
             KY        QDA K +     PPVL +HLKRF Y  NR    K+N    FP+E D + 
Sbjct  181  EKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSY--NRSTWEKLNTEVEFPLELDLSR  238

Query  225  YLSDAADKSEP--WIYQLHGVLVHSGDLNAGHYYAFLKPTKDGHWFKFDDDRVTRAT-DK  281
            YL++           Y+L  V+VHSG L++GHY A++K  ++  W+KFDD++VT    + 
Sbjct  239  YLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEET  298

Query  282  EVLEEN  287
             VL  +
Sbjct  299  AVLSSS  304



Lambda      K        H        a         alpha
   0.317    0.133    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435715460


Query= TCONS_00043203

Length=231


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.134    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0734    0.140     1.90     42.6     43.6 

Effective search space used: 242775204


Query= TCONS_00043204

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      184     2e-57


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 184 bits (468),  Expect = 2e-57, Method: Composition-based stats.
 Identities = 68/208 (33%), Positives = 104/208 (50%), Gaps = 14/208 (7%)

Query  1    MERLEEKMKA---TPVEKALPGLFVGKTKTYISCINVDYESSRVEDFWDIQLNVRGNKT-  56
            ++ L E +     T  E  +  LF G+ K+ + C++    S   E F D+ L + G+   
Sbjct  99   LDGLHEDLNGNHSTENESLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAE  158

Query  57   -----LDDSFKDYIQVETLEGENKYDAGSPYGLQDAKKGVIFESFPPVLHLHLKRFEYDI  111
                 L   F  + ++E L+ E KY        QDA K +     PPVL +HLKRF Y  
Sbjct  159  LKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSY--  216

Query  112  NRDAMMKINDRHAFPMEFDATPYLSDAADKSEP--WIYQLHGVLVHSGDLNAGHYYAFLK  169
            NR    K+N    FP+E D + YL++           Y+L  V+VHSG L++GHY A++K
Sbjct  217  NRSTWEKLNTEVEFPLELDLSRYLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIK  276

Query  170  PTKDGHWFKFDDDRVTRAT-DKEVLEEN  196
              ++  W+KFDD++VT    +  VL  +
Sbjct  277  AYENNRWYKFDDEKVTEVDEETAVLSSS  304



Lambda      K        H        a         alpha
   0.318    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303104128


Query= TCONS_00037699

Length=581
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      271     3e-87


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 271 bits (694),  Expect = 3e-87, Method: Composition-based stats.
 Identities = 104/306 (34%), Positives = 152/306 (50%), Gaps = 22/306 (7%)

Query  218  VGLKNQGATCYLNSLLQSLYFTNAFRKAVYQIPTEAEATRDNS----AWTLQRLFYNLQ-  272
             GL N G TCY+NS+LQSL+    FR  + +I   +E +R N        L+ LF  LQ 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  273  -TSESSVSTTELTASFGWESRQ--IFEQQDVQELSRKLMERLEEKMKA---TPVEKALPG  326
             +  SSVS      S G  +     ++QQD QE    L++ L E +     T  E  +  
Sbjct  61   NSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLITD  120

Query  327  LFVGKTKTYISCINVDYESSRVEDFWDIQLNVRGNKT------LDDSFKDYIQVETLEGE  380
            LF G+ K+ + C++    S   E F D+ L + G+        L   F  + ++E L+ E
Sbjct  121  LFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDE  180

Query  381  NKYDAGSPYGLQDAKKGVIFESFPPVLHLHLKRFEYDINRDAMMKINDRHAFPMEFDATP  440
             KY        QDA K +     PPVL +HLKRF Y  NR    K+N    FP+E D + 
Sbjct  181  EKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSY--NRSTWEKLNTEVEFPLELDLSR  238

Query  441  YLSDAADKSEP--WIYQLHGVLVHSGDLNAGHYYAFLKPTKDGHWFKFDDDRVTRAT-DK  497
            YL++           Y+L  V+VHSG L++GHY A++K  ++  W+KFDD++VT    + 
Sbjct  239  YLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEET  298

Query  498  EVLEEN  503
             VL  +
Sbjct  299  AVLSSS  304



Lambda      K        H        a         alpha
   0.318    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 730775292


Query= TCONS_00043205

Length=1076
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiqu...  367     1e-120
CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-term...  282     7e-89 
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      272     7e-84 


>CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiquitin-specific 
protease 7.  This domain is one of two C-terminal domains 
on the much longer ubiquitin-specific proteases. This particular 
one is found to interact with the herpesvirus 1 trans-acting 
transcriptional protein ICP0/VMW110.
Length=239

 Score = 367 bits (946),  Expect = 1e-120, Method: Composition-based stats.
 Identities = 124/250 (50%), Positives = 162/250 (65%), Gaps = 13/250 (5%)

Query  598  IRLWVMVNRQNKTTRPDQAIKDPEM--TVEEAYSRFGTKGNPFKVWMEVGQPSADGTISW  655
            IRLW MVNRQNKT RPDQ + + +   TVEE   +  T+ NP ++++EV +         
Sbjct  1    IRLWPMVNRQNKTVRPDQPLPEADPAKTVEEIRDKMATRDNPLRLFLEVAEELPP-----  55

Query  656  PDSSTSVLVFLKNFDVPSQTLSGVGTVYVRKNQKVAELAPTILEKMNWPAGTEFMLFEEI  715
             D +  +L+FLK +D   QTL GVG VYV K+ KV++L P I E+M WP  T  +L+EEI
Sbjct  56   FDKNDDILLFLKYYDPEKQTLRGVGHVYVPKSSKVSDLVPIINERMGWPPDTPLLLYEEI  115

Query  716  KHNMIDVMKPKQTFQQSEIQDGDIITFQRTVKESDLPSTALYTEARQYYDYLLNRINITF  775
            K NMI++MKPKQT ++SE+QDGDII FQR + E +      Y  A+ YYD+LLNR+ +TF
Sbjct  116  KPNMIEIMKPKQTLKKSELQDGDIICFQRELSEKE---QDEYPTAKDYYDFLLNRVEVTF  172

Query  776  APIKATDGDEFTLTLSRKMTYDQFSKKVGEHLNVESTHLRFAPVLASTGKPKQFIKRNPN  835
             P    +   FTL LS+KMTYDQ ++KV E L V+ T LRF  V   +G+PK  IKRNP 
Sbjct  173  RPKDNPNDPGFTLELSKKMTYDQLAEKVAERLGVDPTKLRFTTVNNYSGQPKTPIKRNP-  231

Query  836  QANQTLYHIL  845
              NQTL  IL
Sbjct  232  --NQTLKDIL  239


>CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-terminal.  
This C-terminal domain on many long ubiquitin-specific proteases 
has no known function.
Length=204

 Score = 282 bits (723),  Expect = 7e-89, Method: Composition-based stats.
 Identities = 112/206 (54%), Positives = 150/206 (73%), Gaps = 4/206 (2%)

Query  861   ALYYEVLETSLSDYESKTTLKVTLLTEGIVKEQLFEVLVPRDGTFADLLAGLQKKANLED  920
             ALYYEVL+ SLS+ E+K ++KVT L+ G+ KE+  E+LVP++GT ADLL  LQKK  L +
Sbjct  1     ALYYEVLDISLSELENKKSIKVTWLSPGLKKEEELELLVPKNGTVADLLEELQKKVKLSE  60

Query  921   DVVREMRIFEAHSGKIYKEYQEDAKIAGINEYVTLYAERIPEEELQMQAGERTINAFNFD  980
             +   ++R++E  + KIYKE  ED  I  +N+Y+TLYAE IPEEEL +  GER I  F+F 
Sbjct  61    EGSGKIRLYEVSNHKIYKELSEDEPIDSLNDYLTLYAEEIPEEELNLDEGERLIPVFHFQ  120

Query  981   REPSRPHGIPFKFVMKPGEIFKETKERLSKRTGIKGKQFEKIKFAVVPKSLYSNPRYLDD  1040
             +EPSR HGIPF FV+KPGE F +TK+RL KR G+  K+FEKIKFA+V +     P YL+D
Sbjct  121   KEPSRTHGIPFLFVLKPGEPFSDTKKRLQKRLGLPDKEFEKIKFALVQRG--KKPEYLED  178

Query  1041  DDILSDIVGESDD--MLGLDHVNKSR  1064
             DD+L D++G+ DD   LGLDH +K+ 
Sbjct  179   DDVLFDLLGQPDDLPWLGLDHPDKTP  204


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 272 bits (698),  Expect = 7e-84, Method: Composition-based stats.
 Identities = 104/306 (34%), Positives = 152/306 (50%), Gaps = 22/306 (7%)

Query  171  VGLKNQGATCYLNSLLQSLYFTNAFRKAVYQIPTEAEATRDNS----AWTLQRLFYNLQ-  225
             GL N G TCY+NS+LQSL+    FR  + +I   +E +R N        L+ LF  LQ 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  226  -TSESSVSTTELTASFGWESRQ--IFEQQDVQELSRKLMERLEEKMKA---TPVEKALPG  279
             +  SSVS      S G  +     ++QQD QE    L++ L E +     T  E  +  
Sbjct  61   NSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLITD  120

Query  280  LFVGKTKTYISCINVDYESSRVEDFWDIQLNVRGNKT------LDDSFKDYIQVETLEGE  333
            LF G+ K+ + C++    S   E F D+ L + G+        L   F  + ++E L+ E
Sbjct  121  LFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDE  180

Query  334  NKYDAGSPYGLQDAKKGVIFESFPPVLHLHLKRFEYDINRDAMMKINDRHAFPMEFDATP  393
             KY        QDA K +     PPVL +HLKRF Y  NR    K+N    FP+E D + 
Sbjct  181  EKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSY--NRSTWEKLNTEVEFPLELDLSR  238

Query  394  YLSDAADKSEP--WIYQLHGVLVHSGDLNAGHYYAFLKPTKDGHWFKFDDDRVTRAT-DK  450
            YL++           Y+L  V+VHSG L++GHY A++K  ++  W+KFDD++VT    + 
Sbjct  239  YLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEET  298

Query  451  EVLEEN  456
             VL  +
Sbjct  299  AVLSSS  304



Lambda      K        H        a         alpha
   0.317    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1387558480


Query= TCONS_00037700

Length=1076
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiqu...  367     1e-120
CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-term...  282     7e-89 
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      272     7e-84 


>CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiquitin-specific 
protease 7.  This domain is one of two C-terminal domains 
on the much longer ubiquitin-specific proteases. This particular 
one is found to interact with the herpesvirus 1 trans-acting 
transcriptional protein ICP0/VMW110.
Length=239

 Score = 367 bits (946),  Expect = 1e-120, Method: Composition-based stats.
 Identities = 124/250 (50%), Positives = 162/250 (65%), Gaps = 13/250 (5%)

Query  598  IRLWVMVNRQNKTTRPDQAIKDPEM--TVEEAYSRFGTKGNPFKVWMEVGQPSADGTISW  655
            IRLW MVNRQNKT RPDQ + + +   TVEE   +  T+ NP ++++EV +         
Sbjct  1    IRLWPMVNRQNKTVRPDQPLPEADPAKTVEEIRDKMATRDNPLRLFLEVAEELPP-----  55

Query  656  PDSSTSVLVFLKNFDVPSQTLSGVGTVYVRKNQKVAELAPTILEKMNWPAGTEFMLFEEI  715
             D +  +L+FLK +D   QTL GVG VYV K+ KV++L P I E+M WP  T  +L+EEI
Sbjct  56   FDKNDDILLFLKYYDPEKQTLRGVGHVYVPKSSKVSDLVPIINERMGWPPDTPLLLYEEI  115

Query  716  KHNMIDVMKPKQTFQQSEIQDGDIITFQRTVKESDLPSTALYTEARQYYDYLLNRINITF  775
            K NMI++MKPKQT ++SE+QDGDII FQR + E +      Y  A+ YYD+LLNR+ +TF
Sbjct  116  KPNMIEIMKPKQTLKKSELQDGDIICFQRELSEKE---QDEYPTAKDYYDFLLNRVEVTF  172

Query  776  APIKATDGDEFTLTLSRKMTYDQFSKKVGEHLNVESTHLRFAPVLASTGKPKQFIKRNPN  835
             P    +   FTL LS+KMTYDQ ++KV E L V+ T LRF  V   +G+PK  IKRNP 
Sbjct  173  RPKDNPNDPGFTLELSKKMTYDQLAEKVAERLGVDPTKLRFTTVNNYSGQPKTPIKRNP-  231

Query  836  QANQTLYHIL  845
              NQTL  IL
Sbjct  232  --NQTLKDIL  239


>CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-terminal.  
This C-terminal domain on many long ubiquitin-specific proteases 
has no known function.
Length=204

 Score = 282 bits (723),  Expect = 7e-89, Method: Composition-based stats.
 Identities = 112/206 (54%), Positives = 150/206 (73%), Gaps = 4/206 (2%)

Query  861   ALYYEVLETSLSDYESKTTLKVTLLTEGIVKEQLFEVLVPRDGTFADLLAGLQKKANLED  920
             ALYYEVL+ SLS+ E+K ++KVT L+ G+ KE+  E+LVP++GT ADLL  LQKK  L +
Sbjct  1     ALYYEVLDISLSELENKKSIKVTWLSPGLKKEEELELLVPKNGTVADLLEELQKKVKLSE  60

Query  921   DVVREMRIFEAHSGKIYKEYQEDAKIAGINEYVTLYAERIPEEELQMQAGERTINAFNFD  980
             +   ++R++E  + KIYKE  ED  I  +N+Y+TLYAE IPEEEL +  GER I  F+F 
Sbjct  61    EGSGKIRLYEVSNHKIYKELSEDEPIDSLNDYLTLYAEEIPEEELNLDEGERLIPVFHFQ  120

Query  981   REPSRPHGIPFKFVMKPGEIFKETKERLSKRTGIKGKQFEKIKFAVVPKSLYSNPRYLDD  1040
             +EPSR HGIPF FV+KPGE F +TK+RL KR G+  K+FEKIKFA+V +     P YL+D
Sbjct  121   KEPSRTHGIPFLFVLKPGEPFSDTKKRLQKRLGLPDKEFEKIKFALVQRG--KKPEYLED  178

Query  1041  DDILSDIVGESDD--MLGLDHVNKSR  1064
             DD+L D++G+ DD   LGLDH +K+ 
Sbjct  179   DDVLFDLLGQPDDLPWLGLDHPDKTP  204


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 272 bits (698),  Expect = 7e-84, Method: Composition-based stats.
 Identities = 104/306 (34%), Positives = 152/306 (50%), Gaps = 22/306 (7%)

Query  171  VGLKNQGATCYLNSLLQSLYFTNAFRKAVYQIPTEAEATRDNS----AWTLQRLFYNLQ-  225
             GL N G TCY+NS+LQSL+    FR  + +I   +E +R N        L+ LF  LQ 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  226  -TSESSVSTTELTASFGWESRQ--IFEQQDVQELSRKLMERLEEKMKA---TPVEKALPG  279
             +  SSVS      S G  +     ++QQD QE    L++ L E +     T  E  +  
Sbjct  61   NSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLITD  120

Query  280  LFVGKTKTYISCINVDYESSRVEDFWDIQLNVRGNKT------LDDSFKDYIQVETLEGE  333
            LF G+ K+ + C++    S   E F D+ L + G+        L   F  + ++E L+ E
Sbjct  121  LFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDE  180

Query  334  NKYDAGSPYGLQDAKKGVIFESFPPVLHLHLKRFEYDINRDAMMKINDRHAFPMEFDATP  393
             KY        QDA K +     PPVL +HLKRF Y  NR    K+N    FP+E D + 
Sbjct  181  EKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSY--NRSTWEKLNTEVEFPLELDLSR  238

Query  394  YLSDAADKSEP--WIYQLHGVLVHSGDLNAGHYYAFLKPTKDGHWFKFDDDRVTRAT-DK  450
            YL++           Y+L  V+VHSG L++GHY A++K  ++  W+KFDD++VT    + 
Sbjct  239  YLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEET  298

Query  451  EVLEEN  456
             VL  +
Sbjct  299  AVLSSS  304



Lambda      K        H        a         alpha
   0.317    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1387558480


Query= TCONS_00037701

Length=1123
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiqu...  366     2e-119
CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-term...  280     3e-88 
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      272     2e-83 


>CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiquitin-specific 
protease 7.  This domain is one of two C-terminal domains 
on the much longer ubiquitin-specific proteases. This particular 
one is found to interact with the herpesvirus 1 trans-acting 
transcriptional protein ICP0/VMW110.
Length=239

 Score = 366 bits (941),  Expect = 2e-119, Method: Composition-based stats.
 Identities = 124/250 (50%), Positives = 162/250 (65%), Gaps = 13/250 (5%)

Query  645  IRLWVMVNRQNKTTRPDQAIKDPEM--TVEEAYSRFGTKGNPFKVWMEVGQPSADGTISW  702
            IRLW MVNRQNKT RPDQ + + +   TVEE   +  T+ NP ++++EV +         
Sbjct  1    IRLWPMVNRQNKTVRPDQPLPEADPAKTVEEIRDKMATRDNPLRLFLEVAEELPP-----  55

Query  703  PDSSTSVLVFLKNFDVPSQTLSGVGTVYVRKNQKVAELAPTILEKMNWPAGTEFMLFEEI  762
             D +  +L+FLK +D   QTL GVG VYV K+ KV++L P I E+M WP  T  +L+EEI
Sbjct  56   FDKNDDILLFLKYYDPEKQTLRGVGHVYVPKSSKVSDLVPIINERMGWPPDTPLLLYEEI  115

Query  763  KHNMIDVMKPKQTFQQSEIQDGDIITFQRTVKESDLPSTALYTEARQYYDYLLNRINITF  822
            K NMI++MKPKQT ++SE+QDGDII FQR + E +      Y  A+ YYD+LLNR+ +TF
Sbjct  116  KPNMIEIMKPKQTLKKSELQDGDIICFQRELSEKE---QDEYPTAKDYYDFLLNRVEVTF  172

Query  823  APIKATDGDEFTLTLSRKMTYDQFSKKVGEHLNVESTHLRFAPVLASTGKPKQFIKRNPN  882
             P    +   FTL LS+KMTYDQ ++KV E L V+ T LRF  V   +G+PK  IKRNP 
Sbjct  173  RPKDNPNDPGFTLELSKKMTYDQLAEKVAERLGVDPTKLRFTTVNNYSGQPKTPIKRNP-  231

Query  883  QANQTLYHIL  892
              NQTL  IL
Sbjct  232  --NQTLKDIL  239


>CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-terminal.  
This C-terminal domain on many long ubiquitin-specific proteases 
has no known function.
Length=204

 Score = 280 bits (720),  Expect = 3e-88, Method: Composition-based stats.
 Identities = 112/206 (54%), Positives = 150/206 (73%), Gaps = 4/206 (2%)

Query  908   ALYYEVLETSLSDYESKTTLKVTLLTEGIVKEQLFEVLVPRDGTFADLLAGLQKKANLED  967
             ALYYEVL+ SLS+ E+K ++KVT L+ G+ KE+  E+LVP++GT ADLL  LQKK  L +
Sbjct  1     ALYYEVLDISLSELENKKSIKVTWLSPGLKKEEELELLVPKNGTVADLLEELQKKVKLSE  60

Query  968   DVVREMRIFEAHSGKIYKEYQEDAKIAGINEYVTLYAERIPEEELQMQAGERTINAFNFD  1027
             +   ++R++E  + KIYKE  ED  I  +N+Y+TLYAE IPEEEL +  GER I  F+F 
Sbjct  61    EGSGKIRLYEVSNHKIYKELSEDEPIDSLNDYLTLYAEEIPEEELNLDEGERLIPVFHFQ  120

Query  1028  REPSRPHGIPFKFVMKPGEIFKETKERLSKRTGIKGKQFEKIKFAVVPKSLYSNPRYLDD  1087
             +EPSR HGIPF FV+KPGE F +TK+RL KR G+  K+FEKIKFA+V +     P YL+D
Sbjct  121   KEPSRTHGIPFLFVLKPGEPFSDTKKRLQKRLGLPDKEFEKIKFALVQRG--KKPEYLED  178

Query  1088  DDILSDIVGESDD--MLGLDHVNKSR  1111
             DD+L D++G+ DD   LGLDH +K+ 
Sbjct  179   DDVLFDLLGQPDDLPWLGLDHPDKTP  204


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 272 bits (696),  Expect = 2e-83, Method: Composition-based stats.
 Identities = 104/306 (34%), Positives = 152/306 (50%), Gaps = 22/306 (7%)

Query  218  VGLKNQGATCYLNSLLQSLYFTNAFRKAVYQIPTEAEATRDNS----AWTLQRLFYNLQ-  272
             GL N G TCY+NS+LQSL+    FR  + +I   +E +R N        L+ LF  LQ 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  273  -TSESSVSTTELTASFGWESRQ--IFEQQDVQELSRKLMERLEEKMKA---TPVEKALPG  326
             +  SSVS      S G  +     ++QQD QE    L++ L E +     T  E  +  
Sbjct  61   NSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLITD  120

Query  327  LFVGKTKTYISCINVDYESSRVEDFWDIQLNVRGNKT------LDDSFKDYIQVETLEGE  380
            LF G+ K+ + C++    S   E F D+ L + G+        L   F  + ++E L+ E
Sbjct  121  LFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDE  180

Query  381  NKYDAGSPYGLQDAKKGVIFESFPPVLHLHLKRFEYDINRDAMMKINDRHAFPMEFDATP  440
             KY        QDA K +     PPVL +HLKRF Y  NR    K+N    FP+E D + 
Sbjct  181  EKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSY--NRSTWEKLNTEVEFPLELDLSR  238

Query  441  YLSDAADKSEP--WIYQLHGVLVHSGDLNAGHYYAFLKPTKDGHWFKFDDDRVTRAT-DK  497
            YL++           Y+L  V+VHSG L++GHY A++K  ++  W+KFDD++VT    + 
Sbjct  239  YLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEET  298

Query  498  EVLEEN  503
             VL  +
Sbjct  299  AVLSSS  304



Lambda      K        H        a         alpha
   0.317    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1432540188


Query= TCONS_00043206

Length=1123
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiqu...  366     2e-119
CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-term...  280     3e-88 
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      272     2e-83 


>CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiquitin-specific 
protease 7.  This domain is one of two C-terminal domains 
on the much longer ubiquitin-specific proteases. This particular 
one is found to interact with the herpesvirus 1 trans-acting 
transcriptional protein ICP0/VMW110.
Length=239

 Score = 366 bits (941),  Expect = 2e-119, Method: Composition-based stats.
 Identities = 124/250 (50%), Positives = 162/250 (65%), Gaps = 13/250 (5%)

Query  645  IRLWVMVNRQNKTTRPDQAIKDPEM--TVEEAYSRFGTKGNPFKVWMEVGQPSADGTISW  702
            IRLW MVNRQNKT RPDQ + + +   TVEE   +  T+ NP ++++EV +         
Sbjct  1    IRLWPMVNRQNKTVRPDQPLPEADPAKTVEEIRDKMATRDNPLRLFLEVAEELPP-----  55

Query  703  PDSSTSVLVFLKNFDVPSQTLSGVGTVYVRKNQKVAELAPTILEKMNWPAGTEFMLFEEI  762
             D +  +L+FLK +D   QTL GVG VYV K+ KV++L P I E+M WP  T  +L+EEI
Sbjct  56   FDKNDDILLFLKYYDPEKQTLRGVGHVYVPKSSKVSDLVPIINERMGWPPDTPLLLYEEI  115

Query  763  KHNMIDVMKPKQTFQQSEIQDGDIITFQRTVKESDLPSTALYTEARQYYDYLLNRINITF  822
            K NMI++MKPKQT ++SE+QDGDII FQR + E +      Y  A+ YYD+LLNR+ +TF
Sbjct  116  KPNMIEIMKPKQTLKKSELQDGDIICFQRELSEKE---QDEYPTAKDYYDFLLNRVEVTF  172

Query  823  APIKATDGDEFTLTLSRKMTYDQFSKKVGEHLNVESTHLRFAPVLASTGKPKQFIKRNPN  882
             P    +   FTL LS+KMTYDQ ++KV E L V+ T LRF  V   +G+PK  IKRNP 
Sbjct  173  RPKDNPNDPGFTLELSKKMTYDQLAEKVAERLGVDPTKLRFTTVNNYSGQPKTPIKRNP-  231

Query  883  QANQTLYHIL  892
              NQTL  IL
Sbjct  232  --NQTLKDIL  239


>CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-terminal.  
This C-terminal domain on many long ubiquitin-specific proteases 
has no known function.
Length=204

 Score = 280 bits (720),  Expect = 3e-88, Method: Composition-based stats.
 Identities = 112/206 (54%), Positives = 150/206 (73%), Gaps = 4/206 (2%)

Query  908   ALYYEVLETSLSDYESKTTLKVTLLTEGIVKEQLFEVLVPRDGTFADLLAGLQKKANLED  967
             ALYYEVL+ SLS+ E+K ++KVT L+ G+ KE+  E+LVP++GT ADLL  LQKK  L +
Sbjct  1     ALYYEVLDISLSELENKKSIKVTWLSPGLKKEEELELLVPKNGTVADLLEELQKKVKLSE  60

Query  968   DVVREMRIFEAHSGKIYKEYQEDAKIAGINEYVTLYAERIPEEELQMQAGERTINAFNFD  1027
             +   ++R++E  + KIYKE  ED  I  +N+Y+TLYAE IPEEEL +  GER I  F+F 
Sbjct  61    EGSGKIRLYEVSNHKIYKELSEDEPIDSLNDYLTLYAEEIPEEELNLDEGERLIPVFHFQ  120

Query  1028  REPSRPHGIPFKFVMKPGEIFKETKERLSKRTGIKGKQFEKIKFAVVPKSLYSNPRYLDD  1087
             +EPSR HGIPF FV+KPGE F +TK+RL KR G+  K+FEKIKFA+V +     P YL+D
Sbjct  121   KEPSRTHGIPFLFVLKPGEPFSDTKKRLQKRLGLPDKEFEKIKFALVQRG--KKPEYLED  178

Query  1088  DDILSDIVGESDD--MLGLDHVNKSR  1111
             DD+L D++G+ DD   LGLDH +K+ 
Sbjct  179   DDVLFDLLGQPDDLPWLGLDHPDKTP  204


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 272 bits (696),  Expect = 2e-83, Method: Composition-based stats.
 Identities = 104/306 (34%), Positives = 152/306 (50%), Gaps = 22/306 (7%)

Query  218  VGLKNQGATCYLNSLLQSLYFTNAFRKAVYQIPTEAEATRDNS----AWTLQRLFYNLQ-  272
             GL N G TCY+NS+LQSL+    FR  + +I   +E +R N        L+ LF  LQ 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  273  -TSESSVSTTELTASFGWESRQ--IFEQQDVQELSRKLMERLEEKMKA---TPVEKALPG  326
             +  SSVS      S G  +     ++QQD QE    L++ L E +     T  E  +  
Sbjct  61   NSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLITD  120

Query  327  LFVGKTKTYISCINVDYESSRVEDFWDIQLNVRGNKT------LDDSFKDYIQVETLEGE  380
            LF G+ K+ + C++    S   E F D+ L + G+        L   F  + ++E L+ E
Sbjct  121  LFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDE  180

Query  381  NKYDAGSPYGLQDAKKGVIFESFPPVLHLHLKRFEYDINRDAMMKINDRHAFPMEFDATP  440
             KY        QDA K +     PPVL +HLKRF Y  NR    K+N    FP+E D + 
Sbjct  181  EKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSY--NRSTWEKLNTEVEFPLELDLSR  238

Query  441  YLSDAADKSEP--WIYQLHGVLVHSGDLNAGHYYAFLKPTKDGHWFKFDDDRVTRAT-DK  497
            YL++           Y+L  V+VHSG L++GHY A++K  ++  W+KFDD++VT    + 
Sbjct  239  YLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEET  298

Query  498  EVLEEN  503
             VL  +
Sbjct  299  AVLSSS  304



Lambda      K        H        a         alpha
   0.317    0.134    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1432540188


Query= TCONS_00043208

Length=1115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiqu...  366     1e-119
CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-term...  280     3e-88 
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      272     2e-83 


>CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiquitin-specific 
protease 7.  This domain is one of two C-terminal domains 
on the much longer ubiquitin-specific proteases. This particular 
one is found to interact with the herpesvirus 1 trans-acting 
transcriptional protein ICP0/VMW110.
Length=239

 Score = 366 bits (941),  Expect = 1e-119, Method: Composition-based stats.
 Identities = 124/250 (50%), Positives = 162/250 (65%), Gaps = 13/250 (5%)

Query  637  IRLWVMVNRQNKTTRPDQAIKDPEM--TVEEAYSRFGTKGNPFKVWMEVGQPSADGTISW  694
            IRLW MVNRQNKT RPDQ + + +   TVEE   +  T+ NP ++++EV +         
Sbjct  1    IRLWPMVNRQNKTVRPDQPLPEADPAKTVEEIRDKMATRDNPLRLFLEVAEELPP-----  55

Query  695  PDSSTSVLVFLKNFDVPSQTLSGVGTVYVRKNQKVAELAPTILEKMNWPAGTEFMLFEEI  754
             D +  +L+FLK +D   QTL GVG VYV K+ KV++L P I E+M WP  T  +L+EEI
Sbjct  56   FDKNDDILLFLKYYDPEKQTLRGVGHVYVPKSSKVSDLVPIINERMGWPPDTPLLLYEEI  115

Query  755  KHNMIDVMKPKQTFQQSEIQDGDIITFQRTVKESDLPSTALYTEARQYYDYLLNRINITF  814
            K NMI++MKPKQT ++SE+QDGDII FQR + E +      Y  A+ YYD+LLNR+ +TF
Sbjct  116  KPNMIEIMKPKQTLKKSELQDGDIICFQRELSEKE---QDEYPTAKDYYDFLLNRVEVTF  172

Query  815  APIKATDGDEFTLTLSRKMTYDQFSKKVGEHLNVESTHLRFAPVLASTGKPKQFIKRNPN  874
             P    +   FTL LS+KMTYDQ ++KV E L V+ T LRF  V   +G+PK  IKRNP 
Sbjct  173  RPKDNPNDPGFTLELSKKMTYDQLAEKVAERLGVDPTKLRFTTVNNYSGQPKTPIKRNP-  231

Query  875  QANQTLYHIL  884
              NQTL  IL
Sbjct  232  --NQTLKDIL  239


>CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-terminal.  
This C-terminal domain on many long ubiquitin-specific proteases 
has no known function.
Length=204

 Score = 280 bits (720),  Expect = 3e-88, Method: Composition-based stats.
 Identities = 112/206 (54%), Positives = 150/206 (73%), Gaps = 4/206 (2%)

Query  900   ALYYEVLETSLSDYESKTTLKVTLLTEGIVKEQLFEVLVPRDGTFADLLAGLQKKANLED  959
             ALYYEVL+ SLS+ E+K ++KVT L+ G+ KE+  E+LVP++GT ADLL  LQKK  L +
Sbjct  1     ALYYEVLDISLSELENKKSIKVTWLSPGLKKEEELELLVPKNGTVADLLEELQKKVKLSE  60

Query  960   DVVREMRIFEAHSGKIYKEYQEDAKIAGINEYVTLYAERIPEEELQMQAGERTINAFNFD  1019
             +   ++R++E  + KIYKE  ED  I  +N+Y+TLYAE IPEEEL +  GER I  F+F 
Sbjct  61    EGSGKIRLYEVSNHKIYKELSEDEPIDSLNDYLTLYAEEIPEEELNLDEGERLIPVFHFQ  120

Query  1020  REPSRPHGIPFKFVMKPGEIFKETKERLSKRTGIKGKQFEKIKFAVVPKSLYSNPRYLDD  1079
             +EPSR HGIPF FV+KPGE F +TK+RL KR G+  K+FEKIKFA+V +     P YL+D
Sbjct  121   KEPSRTHGIPFLFVLKPGEPFSDTKKRLQKRLGLPDKEFEKIKFALVQRG--KKPEYLED  178

Query  1080  DDILSDIVGESDD--MLGLDHVNKSR  1103
             DD+L D++G+ DD   LGLDH +K+ 
Sbjct  179   DDVLFDLLGQPDDLPWLGLDHPDKTP  204


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 272 bits (696),  Expect = 2e-83, Method: Composition-based stats.
 Identities = 104/306 (34%), Positives = 152/306 (50%), Gaps = 22/306 (7%)

Query  210  VGLKNQGATCYLNSLLQSLYFTNAFRKAVYQIPTEAEATRDNS----AWTLQRLFYNLQ-  264
             GL N G TCY+NS+LQSL+    FR  + +I   +E +R N        L+ LF  LQ 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  265  -TSESSVSTTELTASFGWESRQ--IFEQQDVQELSRKLMERLEEKMKA---TPVEKALPG  318
             +  SSVS      S G  +     ++QQD QE    L++ L E +     T  E  +  
Sbjct  61   NSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLITD  120

Query  319  LFVGKTKTYISCINVDYESSRVEDFWDIQLNVRGNKT------LDDSFKDYIQVETLEGE  372
            LF G+ K+ + C++    S   E F D+ L + G+        L   F  + ++E L+ E
Sbjct  121  LFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDE  180

Query  373  NKYDAGSPYGLQDAKKGVIFESFPPVLHLHLKRFEYDINRDAMMKINDRHAFPMEFDATP  432
             KY        QDA K +     PPVL +HLKRF Y  NR    K+N    FP+E D + 
Sbjct  181  EKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSY--NRSTWEKLNTEVEFPLELDLSR  238

Query  433  YLSDAADKSEP--WIYQLHGVLVHSGDLNAGHYYAFLKPTKDGHWFKFDDDRVTRAT-DK  489
            YL++           Y+L  V+VHSG L++GHY A++K  ++  W+KFDD++VT    + 
Sbjct  239  YLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEET  298

Query  490  EVLEEN  495
             VL  +
Sbjct  299  AVLSSS  304



Lambda      K        H        a         alpha
   0.317    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1421370284


Query= TCONS_00043207

Length=1140
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiqu...  366     1e-119
CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-term...  281     3e-88 
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      272     2e-83 


>CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiquitin-specific 
protease 7.  This domain is one of two C-terminal domains 
on the much longer ubiquitin-specific proteases. This particular 
one is found to interact with the herpesvirus 1 trans-acting 
transcriptional protein ICP0/VMW110.
Length=239

 Score = 366 bits (943),  Expect = 1e-119, Method: Composition-based stats.
 Identities = 124/250 (50%), Positives = 162/250 (65%), Gaps = 13/250 (5%)

Query  662  IRLWVMVNRQNKTTRPDQAIKDPEM--TVEEAYSRFGTKGNPFKVWMEVGQPSADGTISW  719
            IRLW MVNRQNKT RPDQ + + +   TVEE   +  T+ NP ++++EV +         
Sbjct  1    IRLWPMVNRQNKTVRPDQPLPEADPAKTVEEIRDKMATRDNPLRLFLEVAEELPP-----  55

Query  720  PDSSTSVLVFLKNFDVPSQTLSGVGTVYVRKNQKVAELAPTILEKMNWPAGTEFMLFEEI  779
             D +  +L+FLK +D   QTL GVG VYV K+ KV++L P I E+M WP  T  +L+EEI
Sbjct  56   FDKNDDILLFLKYYDPEKQTLRGVGHVYVPKSSKVSDLVPIINERMGWPPDTPLLLYEEI  115

Query  780  KHNMIDVMKPKQTFQQSEIQDGDIITFQRTVKESDLPSTALYTEARQYYDYLLNRINITF  839
            K NMI++MKPKQT ++SE+QDGDII FQR + E +      Y  A+ YYD+LLNR+ +TF
Sbjct  116  KPNMIEIMKPKQTLKKSELQDGDIICFQRELSEKE---QDEYPTAKDYYDFLLNRVEVTF  172

Query  840  APIKATDGDEFTLTLSRKMTYDQFSKKVGEHLNVESTHLRFAPVLASTGKPKQFIKRNPN  899
             P    +   FTL LS+KMTYDQ ++KV E L V+ T LRF  V   +G+PK  IKRNP 
Sbjct  173  RPKDNPNDPGFTLELSKKMTYDQLAEKVAERLGVDPTKLRFTTVNNYSGQPKTPIKRNP-  231

Query  900  QANQTLYHIL  909
              NQTL  IL
Sbjct  232  --NQTLKDIL  239


>CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-terminal.  
This C-terminal domain on many long ubiquitin-specific proteases 
has no known function.
Length=204

 Score = 281 bits (721),  Expect = 3e-88, Method: Composition-based stats.
 Identities = 112/206 (54%), Positives = 150/206 (73%), Gaps = 4/206 (2%)

Query  925   ALYYEVLETSLSDYESKTTLKVTLLTEGIVKEQLFEVLVPRDGTFADLLAGLQKKANLED  984
             ALYYEVL+ SLS+ E+K ++KVT L+ G+ KE+  E+LVP++GT ADLL  LQKK  L +
Sbjct  1     ALYYEVLDISLSELENKKSIKVTWLSPGLKKEEELELLVPKNGTVADLLEELQKKVKLSE  60

Query  985   DVVREMRIFEAHSGKIYKEYQEDAKIAGINEYVTLYAERIPEEELQMQAGERTINAFNFD  1044
             +   ++R++E  + KIYKE  ED  I  +N+Y+TLYAE IPEEEL +  GER I  F+F 
Sbjct  61    EGSGKIRLYEVSNHKIYKELSEDEPIDSLNDYLTLYAEEIPEEELNLDEGERLIPVFHFQ  120

Query  1045  REPSRPHGIPFKFVMKPGEIFKETKERLSKRTGIKGKQFEKIKFAVVPKSLYSNPRYLDD  1104
             +EPSR HGIPF FV+KPGE F +TK+RL KR G+  K+FEKIKFA+V +     P YL+D
Sbjct  121   KEPSRTHGIPFLFVLKPGEPFSDTKKRLQKRLGLPDKEFEKIKFALVQRG--KKPEYLED  178

Query  1105  DDILSDIVGESDD--MLGLDHVNKSR  1128
             DD+L D++G+ DD   LGLDH +K+ 
Sbjct  179   DDVLFDLLGQPDDLPWLGLDHPDKTP  204


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 272 bits (697),  Expect = 2e-83, Method: Composition-based stats.
 Identities = 104/306 (34%), Positives = 152/306 (50%), Gaps = 22/306 (7%)

Query  235  VGLKNQGATCYLNSLLQSLYFTNAFRKAVYQIPTEAEATRDNS----AWTLQRLFYNLQ-  289
             GL N G TCY+NS+LQSL+    FR  + +I   +E +R N        L+ LF  LQ 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  290  -TSESSVSTTELTASFGWESRQ--IFEQQDVQELSRKLMERLEEKMKA---TPVEKALPG  343
             +  SSVS      S G  +     ++QQD QE    L++ L E +     T  E  +  
Sbjct  61   NSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLITD  120

Query  344  LFVGKTKTYISCINVDYESSRVEDFWDIQLNVRGNKT------LDDSFKDYIQVETLEGE  397
            LF G+ K+ + C++    S   E F D+ L + G+        L   F  + ++E L+ E
Sbjct  121  LFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDE  180

Query  398  NKYDAGSPYGLQDAKKGVIFESFPPVLHLHLKRFEYDINRDAMMKINDRHAFPMEFDATP  457
             KY        QDA K +     PPVL +HLKRF Y  NR    K+N    FP+E D + 
Sbjct  181  EKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSY--NRSTWEKLNTEVEFPLELDLSR  238

Query  458  YLSDAADKSEP--WIYQLHGVLVHSGDLNAGHYYAFLKPTKDGHWFKFDDDRVTRAT-DK  514
            YL++           Y+L  V+VHSG L++GHY A++K  ++  W+KFDD++VT    + 
Sbjct  239  YLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEET  298

Query  515  EVLEEN  520
             VL  +
Sbjct  299  AVLSSS  304



Lambda      K        H        a         alpha
   0.317    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1456276234


Query= TCONS_00037702

Length=1076
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiqu...  367     1e-120
CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-term...  282     7e-89 
CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase      272     7e-84 


>CDD:463580 pfam12436, USP7_ICP0_bdg, ICP0-binding domain of Ubiquitin-specific 
protease 7.  This domain is one of two C-terminal domains 
on the much longer ubiquitin-specific proteases. This particular 
one is found to interact with the herpesvirus 1 trans-acting 
transcriptional protein ICP0/VMW110.
Length=239

 Score = 367 bits (946),  Expect = 1e-120, Method: Composition-based stats.
 Identities = 124/250 (50%), Positives = 162/250 (65%), Gaps = 13/250 (5%)

Query  598  IRLWVMVNRQNKTTRPDQAIKDPEM--TVEEAYSRFGTKGNPFKVWMEVGQPSADGTISW  655
            IRLW MVNRQNKT RPDQ + + +   TVEE   +  T+ NP ++++EV +         
Sbjct  1    IRLWPMVNRQNKTVRPDQPLPEADPAKTVEEIRDKMATRDNPLRLFLEVAEELPP-----  55

Query  656  PDSSTSVLVFLKNFDVPSQTLSGVGTVYVRKNQKVAELAPTILEKMNWPAGTEFMLFEEI  715
             D +  +L+FLK +D   QTL GVG VYV K+ KV++L P I E+M WP  T  +L+EEI
Sbjct  56   FDKNDDILLFLKYYDPEKQTLRGVGHVYVPKSSKVSDLVPIINERMGWPPDTPLLLYEEI  115

Query  716  KHNMIDVMKPKQTFQQSEIQDGDIITFQRTVKESDLPSTALYTEARQYYDYLLNRINITF  775
            K NMI++MKPKQT ++SE+QDGDII FQR + E +      Y  A+ YYD+LLNR+ +TF
Sbjct  116  KPNMIEIMKPKQTLKKSELQDGDIICFQRELSEKE---QDEYPTAKDYYDFLLNRVEVTF  172

Query  776  APIKATDGDEFTLTLSRKMTYDQFSKKVGEHLNVESTHLRFAPVLASTGKPKQFIKRNPN  835
             P    +   FTL LS+KMTYDQ ++KV E L V+ T LRF  V   +G+PK  IKRNP 
Sbjct  173  RPKDNPNDPGFTLELSKKMTYDQLAEKVAERLGVDPTKLRFTTVNNYSGQPKTPIKRNP-  231

Query  836  QANQTLYHIL  845
              NQTL  IL
Sbjct  232  --NQTLKDIL  239


>CDD:464201 pfam14533, USP7_C2, Ubiquitin-specific protease C-terminal.  
This C-terminal domain on many long ubiquitin-specific proteases 
has no known function.
Length=204

 Score = 282 bits (723),  Expect = 7e-89, Method: Composition-based stats.
 Identities = 112/206 (54%), Positives = 150/206 (73%), Gaps = 4/206 (2%)

Query  861   ALYYEVLETSLSDYESKTTLKVTLLTEGIVKEQLFEVLVPRDGTFADLLAGLQKKANLED  920
             ALYYEVL+ SLS+ E+K ++KVT L+ G+ KE+  E+LVP++GT ADLL  LQKK  L +
Sbjct  1     ALYYEVLDISLSELENKKSIKVTWLSPGLKKEEELELLVPKNGTVADLLEELQKKVKLSE  60

Query  921   DVVREMRIFEAHSGKIYKEYQEDAKIAGINEYVTLYAERIPEEELQMQAGERTINAFNFD  980
             +   ++R++E  + KIYKE  ED  I  +N+Y+TLYAE IPEEEL +  GER I  F+F 
Sbjct  61    EGSGKIRLYEVSNHKIYKELSEDEPIDSLNDYLTLYAEEIPEEELNLDEGERLIPVFHFQ  120

Query  981   REPSRPHGIPFKFVMKPGEIFKETKERLSKRTGIKGKQFEKIKFAVVPKSLYSNPRYLDD  1040
             +EPSR HGIPF FV+KPGE F +TK+RL KR G+  K+FEKIKFA+V +     P YL+D
Sbjct  121   KEPSRTHGIPFLFVLKPGEPFSDTKKRLQKRLGLPDKEFEKIKFALVQRG--KKPEYLED  178

Query  1041  DDILSDIVGESDD--MLGLDHVNKSR  1064
             DD+L D++G+ DD   LGLDH +K+ 
Sbjct  179   DDVLFDLLGQPDDLPWLGLDHPDKTP  204


>CDD:425685 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.  
Length=310

 Score = 272 bits (698),  Expect = 7e-84, Method: Composition-based stats.
 Identities = 104/306 (34%), Positives = 152/306 (50%), Gaps = 22/306 (7%)

Query  171  VGLKNQGATCYLNSLLQSLYFTNAFRKAVYQIPTEAEATRDNS----AWTLQRLFYNLQ-  225
             GL N G TCY+NS+LQSL+    FR  + +I   +E +R N        L+ LF  LQ 
Sbjct  1    TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQK  60

Query  226  -TSESSVSTTELTASFGWESRQ--IFEQQDVQELSRKLMERLEEKMKA---TPVEKALPG  279
             +  SSVS      S G  +     ++QQD QE    L++ L E +     T  E  +  
Sbjct  61   NSKSSSVSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDLNGNHSTENESLITD  120

Query  280  LFVGKTKTYISCINVDYESSRVEDFWDIQLNVRGNKT------LDDSFKDYIQVETLEGE  333
            LF G+ K+ + C++    S   E F D+ L + G+        L   F  + ++E L+ E
Sbjct  121  LFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDE  180

Query  334  NKYDAGSPYGLQDAKKGVIFESFPPVLHLHLKRFEYDINRDAMMKINDRHAFPMEFDATP  393
             KY        QDA K +     PPVL +HLKRF Y  NR    K+N    FP+E D + 
Sbjct  181  EKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSY--NRSTWEKLNTEVEFPLELDLSR  238

Query  394  YLSDAADKSEP--WIYQLHGVLVHSGDLNAGHYYAFLKPTKDGHWFKFDDDRVTRAT-DK  450
            YL++           Y+L  V+VHSG L++GHY A++K  ++  W+KFDD++VT    + 
Sbjct  239  YLAEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEET  298

Query  451  EVLEEN  456
             VL  +
Sbjct  299  AVLSSS  304



Lambda      K        H        a         alpha
   0.317    0.134    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1387558480


Query= TCONS_00043209

Length=84
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD. M...  59.2    4e-13


>CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD.  Members 
of this family are implicated in bringing cargo forward from 
the ER and binding to coat proteins by their cytoplasmic domains. 
This domain corresponds closely to the beta-strand rich 
GOLD domain described in. The GOLD domain is always found 
combined with lipid- or membrane-association domains.
Length=181

 Score = 59.2 bits (144),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 33/65 (51%), Gaps = 4/65 (6%)

Query  22  ALTYRLEANEKACFYNYVDQRNAKVAFYFAVQSGGSFDVDYSVVGP---GEKVILDGTKE  78
           ALT+ L A EK CFY  V +    V   + V SGG  DVD++V  P   G  +     ++
Sbjct  1   ALTFELPAGEKECFYEEVPK-GTLVTGSYQVISGGGLDVDFTVTDPDGNGNVIYSKKDRK  59

Query  79  RQGDF  83
             GDF
Sbjct  60  SGGDF  64



Lambda      K        H        a         alpha
   0.321    0.136    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81860170


Query= TCONS_00037703

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD. M...  182     2e-59


>CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD.  Members 
of this family are implicated in bringing cargo forward from 
the ER and binding to coat proteins by their cytoplasmic domains. 
This domain corresponds closely to the beta-strand rich 
GOLD domain described in. The GOLD domain is always found 
combined with lipid- or membrane-association domains.
Length=181

 Score = 182 bits (464),  Expect = 2e-59, Method: Composition-based stats.
 Identities = 75/185 (41%), Positives = 105/185 (57%), Gaps = 7/185 (4%)

Query  22   ALTYRLEANEKACFYNYVDQRNAKVAFYFAVQSGGSFDVDYSVVGP---GEKVILDGTKE  78
            ALT+ L A EK CFY  V +    V   + V SGG  DVD++V  P   G  +     ++
Sbjct  1    ALTFELPAGEKECFYEEVPK-GTLVTGSYQVISGGGLDVDFTVTDPDGNGNVIYSKKDRK  59

Query  79   RQGDFVFTAQSIGEYRFCFNNEMSTFAEKMVDFEIAVENEERAQLPSRQGASPEQASALE  138
              GDF FTA   GEY+FCF+N  STF+ K V F+I V +E +        A  E+   LE
Sbjct  60   SGGDFSFTATESGEYKFCFDNSFSTFSSKTVSFDIKVGSEAKDYDDV---AKKEKLDPLE  116

Query  139  ESIYKLSAQLSTIARNQKYFRTRENRNFSTVRSTERRIFNFSVIEGLMMVSMAGLQVFIV  198
            E + KL  QL+ I R QKY R RE R+  T  ST  R+  +S+I+ L++V ++ LQV+ +
Sbjct  117  EELRKLEDQLNDIKREQKYLREREARHRDTNESTNSRVVWWSIIQLLVLVGVSVLQVYYL  176

Query  199  RFFFQ  203
            + FF+
Sbjct  177  KRFFE  181



Lambda      K        H        a         alpha
   0.322    0.134    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212238590


Query= TCONS_00037704

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD. M...  185     6e-60


>CDD:426051 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD.  Members 
of this family are implicated in bringing cargo forward from 
the ER and binding to coat proteins by their cytoplasmic domains. 
This domain corresponds closely to the beta-strand rich 
GOLD domain described in. The GOLD domain is always found 
combined with lipid- or membrane-association domains.
Length=181

 Score = 185 bits (471),  Expect = 6e-60, Method: Composition-based stats.
 Identities = 75/185 (41%), Positives = 105/185 (57%), Gaps = 7/185 (4%)

Query  22   ALTYRLEANEKACFYNYVDQRNAKVAFYFAVQSGGSFDVDYSVVGP---GEKVILDGTKE  78
            ALT+ L A EK CFY  V +    V   + V SGG  DVD++V  P   G  +     ++
Sbjct  1    ALTFELPAGEKECFYEEVPK-GTLVTGSYQVISGGGLDVDFTVTDPDGNGNVIYSKKDRK  59

Query  79   RQGDFVFTAQSIGEYRFCFNNEMSTFAEKMVDFEIAVENEERAQLPSRQGASPEQASALE  138
              GDF FTA   GEY+FCF+N  STF+ K V F+I V +E +        A  E+   LE
Sbjct  60   SGGDFSFTATESGEYKFCFDNSFSTFSSKTVSFDIKVGSEAKDYDDV---AKKEKLDPLE  116

Query  139  ESIYKLSAQLSTIARNQKYFRTRENRNFSTVRSTERRIFNFSVIEGLMMVSMAGLQVFIV  198
            E + KL  QL+ I R QKY R RE R+  T  ST  R+  +S+I+ L++V ++ LQV+ +
Sbjct  117  EELRKLEDQLNDIKREQKYLREREARHRDTNESTNSRVVWWSIIQLLVLVGVSVLQVYYL  176

Query  199  RFFFQ  203
            + FF+
Sbjct  177  KRFFE  181



Lambda      K        H        a         alpha
   0.322    0.134    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254575464


Query= TCONS_00037705

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00037706

Length=58


***** No hits found *****



Lambda      K        H        a         alpha
   0.332    0.137    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82537800


Query= TCONS_00043210

Length=99


***** No hits found *****



Lambda      K        H        a         alpha
   0.328    0.136    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00037708

Length=96


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.131    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82160560


Query= TCONS_00037709

Length=97


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.129    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81414316


Query= TCONS_00037711

Length=82


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.138    0.469    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83234830


Query= TCONS_00043212

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00037713

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00037712

Length=53


***** No hits found *****



Lambda      K        H        a         alpha
   0.321    0.128    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82064548


Query= TCONS_00043213

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0735    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00037714

Length=83


***** No hits found *****



Lambda      K        H        a         alpha
   0.325    0.132    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82547500


Query= TCONS_00037715

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00043215

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00043214

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00037716

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00037717

Length=105


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80986160


Query= TCONS_00043216

Length=89


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.134    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81371160


Query= TCONS_00037718

Length=34


***** No hits found *****



Lambda      K        H        a         alpha
   0.308    0.122    0.326    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81744520


Query= TCONS_00037719

Length=132


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 95545440


Query= TCONS_00037720

Length=363


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00037721

Length=363


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00037724

Length=363


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00037723

Length=363


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00043217

Length=363


***** No hits found *****



Lambda      K        H        a         alpha
   0.312    0.131    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432569500


Query= TCONS_00037725

Length=823
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406585 pfam16203, ERCC3_RAD25_C, ERCC3/RAD25/XPB C-terminal h...  529     0.0  
CDD:463939 pfam13625, Helicase_C_3, Helicase conserved C-terminal...  134     1e-37
CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res su...  75.0    3e-16
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  68.8    1e-14
CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  61.9    7e-11


>CDD:406585 pfam16203, ERCC3_RAD25_C, ERCC3/RAD25/XPB C-terminal helicase. 
 This is the C-terminal helicase domain of ERCC3, RAD25 and 
XPB helicases.
Length=248

 Score = 529 bits (1365),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/246 (75%), Positives = 210/246 (85%), Gaps = 1/246 (0%)

Query  512  LAEQGHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRG  571
            L E+GHIA VQCAEVWCPMT EFY EY+R KSRK  LLY+MNP KF+ACQFLI YHE+RG
Sbjct  1    LQEKGHIANVQCAEVWCPMTAEFYREYLRSKSRKKRLLYVMNPNKFRACQFLIRYHERRG  60

Query  572  DKVIVFSDNVYALERYALKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSL  631
            DK+IVFSDNV+AL+ YA KLNK YIYGGT Q ERMRIL+NF+HN  VNTIFLSK+GDTS+
Sbjct  61   DKIIVFSDNVFALKEYAKKLNKPYIYGGTSQAERMRILQNFKHNPNVNTIFLSKVGDTSI  120

Query  632  DLPEATCLIQISSHYGSRRQEAQRLGRILRAKRR-NDEGFNAFFYSLVSKDTDEMFYSSK  690
            DLPEA  LIQISSH+GSRRQEAQRLGRILRAKRR NDEGFNAFFYSLVSKDT EM+YS+K
Sbjct  121  DLPEANVLIQISSHFGSRRQEAQRLGRILRAKRRSNDEGFNAFFYSLVSKDTQEMYYSTK  180

Query  691  RQAFLVDQGYAFKVITHLQGIENLEGLAYATPAERRELLQEVMLQNETSAEVENVTDDLF  750
            RQ FLVDQGYAFKVIT+L G+E+ E LAY+T  E+ ELLQ+V+  N+T AE E + DDL 
Sbjct  181  RQQFLVDQGYAFKVITNLAGMEDEENLAYSTKEEQLELLQKVLAANDTDAEEEVIADDLG  240

Query  751  SERSGG  756
             +R GG
Sbjct  241  KDRKGG  246


>CDD:463939 pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. 
 This domain family is found in a wide variety of helicases 
and helicase-related proteins.
Length=121

 Score = 134 bits (341),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 49/120 (41%), Positives = 67/120 (56%), Gaps = 5/120 (4%)

Query  92   LWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLHEYRLTGNSLYAAVSVGLQPT  151
            L +     TI L    PLAP+A+DFL   AE  SR  H H YRLT  SL  A+  GL   
Sbjct  1    LIVQA-DLTILLPG--PLAPEARDFLAAFAELESR-GHAHTYRLTPLSLRRALDAGLTAE  56

Query  152  DIINFLDRLSKTPLPDTVKSFIIDFTKSFGKIKVVLKHNRFFVESTDPAMLQMLLQDEVI  211
            DI++FL+R SK P+P  ++  I D  +  G++++ L     ++ S DPA+L  LL D  I
Sbjct  57   DILDFLERHSKYPVPQALEYLIRDVARRHGRLRLGL-GASSYLRSDDPAVLAELLADPRI  115


>CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res subunit. 
 
Length=162

 Score = 75.0 bits (185),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 71/166 (43%), Gaps = 15/166 (9%)

Query  331  IRSYQE---KSLSKMFGNGRAKSGIIVLPCGAGKTLV--GITAACT---IKKGTIVLCTS  382
            +R YQ    ++L +   NG+ K G+IV+  G+GKTL    + A        K  + L   
Sbjct  4    LRPYQIEAIENLLESIKNGQ-KRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVLFLVPR  62

Query  383  SMSVVQWRNEFLRWSNIDPGDIAIFTSDNKERFRRSTGIIVSTYSMVSQTRARSHDAQKM  442
               + Q   EF ++         I + D K+       I+V+T   +   +A    + ++
Sbjct  63   KDLLEQALEEFKKFLPNYVEIGEIISGDKKDESVDDNKIVVTTIQSLY--KALELASLEL  120

Query  443  MDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQSKLGLTATLLR  488
            +       + ++I+DE H   AS +R +         LGLTAT  R
Sbjct  121  L----PDFFDVIIIDEAHRSGASSYRNILEYFKPAFLLGLTATPER  162


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 68.8 bits (169),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 32/112 (29%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query  556  KFQACQFLIDYHEKRGDKVIVFSDNVYALERYALKLNK----AYIYGGTPQNERMRILEN  611
            K +A   L+   ++RG KV++FS     LE   L   +    A ++G   Q ER  ILE+
Sbjct  2    KLEALLELLK--KERGGKVLIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  612  FQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK  663
            F+  + ++ +  + + +  LDLP+   +I     + +     QR+GR  RA 
Sbjct  60   FRKGK-IDVLVATDVAERGLDLPDVDLVINYDLPW-NPASYIQRIGRAGRAG  109


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 61.9 bits (151),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 41/189 (22%), Positives = 81/189 (43%), Gaps = 36/189 (19%)

Query  334  YQEKSLSKMFG--NGRAKSGIIVLPCGAGKTLVGITAACTIK-------KGTIVLCTSSM  384
            YQ + ++ M    N   + GI+    G GKTL  I+    +K         T+++   S+
Sbjct  1    YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGPTLIVVPLSL  60

Query  385  SVVQWRNEFLRWSNIDPGDIAIFTSDNKER--------FRRSTGIIVSTYSMVSQTRARS  436
             +  W NEF RW +     + +   + + +        F     ++++TY  +       
Sbjct  61   -LHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYETL-------  112

Query  437  HDAQKMMDWMQSREWGLMILDEVHVV--PASMFRKVTSAIATQSKLGLTATLLREDDKIK  494
               +K  + ++   W  ++LDE H +    S   K   ++ T+++  LT T L+  + ++
Sbjct  113  ---RKHKELLKKVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQ--NNLE  167

Query  495  D----LNFL  499
            +    LNFL
Sbjct  168  ELWALLNFL  176



Lambda      K        H        a         alpha
   0.317    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1045054192


Query= TCONS_00043218

Length=823
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406585 pfam16203, ERCC3_RAD25_C, ERCC3/RAD25/XPB C-terminal h...  529     0.0  
CDD:463939 pfam13625, Helicase_C_3, Helicase conserved C-terminal...  134     1e-37
CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res su...  75.0    3e-16
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  68.8    1e-14
CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  61.9    7e-11


>CDD:406585 pfam16203, ERCC3_RAD25_C, ERCC3/RAD25/XPB C-terminal helicase. 
 This is the C-terminal helicase domain of ERCC3, RAD25 and 
XPB helicases.
Length=248

 Score = 529 bits (1365),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/246 (75%), Positives = 210/246 (85%), Gaps = 1/246 (0%)

Query  512  LAEQGHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRG  571
            L E+GHIA VQCAEVWCPMT EFY EY+R KSRK  LLY+MNP KF+ACQFLI YHE+RG
Sbjct  1    LQEKGHIANVQCAEVWCPMTAEFYREYLRSKSRKKRLLYVMNPNKFRACQFLIRYHERRG  60

Query  572  DKVIVFSDNVYALERYALKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSL  631
            DK+IVFSDNV+AL+ YA KLNK YIYGGT Q ERMRIL+NF+HN  VNTIFLSK+GDTS+
Sbjct  61   DKIIVFSDNVFALKEYAKKLNKPYIYGGTSQAERMRILQNFKHNPNVNTIFLSKVGDTSI  120

Query  632  DLPEATCLIQISSHYGSRRQEAQRLGRILRAKRR-NDEGFNAFFYSLVSKDTDEMFYSSK  690
            DLPEA  LIQISSH+GSRRQEAQRLGRILRAKRR NDEGFNAFFYSLVSKDT EM+YS+K
Sbjct  121  DLPEANVLIQISSHFGSRRQEAQRLGRILRAKRRSNDEGFNAFFYSLVSKDTQEMYYSTK  180

Query  691  RQAFLVDQGYAFKVITHLQGIENLEGLAYATPAERRELLQEVMLQNETSAEVENVTDDLF  750
            RQ FLVDQGYAFKVIT+L G+E+ E LAY+T  E+ ELLQ+V+  N+T AE E + DDL 
Sbjct  181  RQQFLVDQGYAFKVITNLAGMEDEENLAYSTKEEQLELLQKVLAANDTDAEEEVIADDLG  240

Query  751  SERSGG  756
             +R GG
Sbjct  241  KDRKGG  246


>CDD:463939 pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. 
 This domain family is found in a wide variety of helicases 
and helicase-related proteins.
Length=121

 Score = 134 bits (341),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 49/120 (41%), Positives = 67/120 (56%), Gaps = 5/120 (4%)

Query  92   LWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLHEYRLTGNSLYAAVSVGLQPT  151
            L +     TI L    PLAP+A+DFL   AE  SR  H H YRLT  SL  A+  GL   
Sbjct  1    LIVQA-DLTILLPG--PLAPEARDFLAAFAELESR-GHAHTYRLTPLSLRRALDAGLTAE  56

Query  152  DIINFLDRLSKTPLPDTVKSFIIDFTKSFGKIKVVLKHNRFFVESTDPAMLQMLLQDEVI  211
            DI++FL+R SK P+P  ++  I D  +  G++++ L     ++ S DPA+L  LL D  I
Sbjct  57   DILDFLERHSKYPVPQALEYLIRDVARRHGRLRLGL-GASSYLRSDDPAVLAELLADPRI  115


>CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res subunit. 
 
Length=162

 Score = 75.0 bits (185),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 71/166 (43%), Gaps = 15/166 (9%)

Query  331  IRSYQE---KSLSKMFGNGRAKSGIIVLPCGAGKTLV--GITAACT---IKKGTIVLCTS  382
            +R YQ    ++L +   NG+ K G+IV+  G+GKTL    + A        K  + L   
Sbjct  4    LRPYQIEAIENLLESIKNGQ-KRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVLFLVPR  62

Query  383  SMSVVQWRNEFLRWSNIDPGDIAIFTSDNKERFRRSTGIIVSTYSMVSQTRARSHDAQKM  442
               + Q   EF ++         I + D K+       I+V+T   +   +A    + ++
Sbjct  63   KDLLEQALEEFKKFLPNYVEIGEIISGDKKDESVDDNKIVVTTIQSLY--KALELASLEL  120

Query  443  MDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQSKLGLTATLLR  488
            +       + ++I+DE H   AS +R +         LGLTAT  R
Sbjct  121  L----PDFFDVIIIDEAHRSGASSYRNILEYFKPAFLLGLTATPER  162


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 68.8 bits (169),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 32/112 (29%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query  556  KFQACQFLIDYHEKRGDKVIVFSDNVYALERYALKLNK----AYIYGGTPQNERMRILEN  611
            K +A   L+   ++RG KV++FS     LE   L   +    A ++G   Q ER  ILE+
Sbjct  2    KLEALLELLK--KERGGKVLIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  612  FQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK  663
            F+  + ++ +  + + +  LDLP+   +I     + +     QR+GR  RA 
Sbjct  60   FRKGK-IDVLVATDVAERGLDLPDVDLVINYDLPW-NPASYIQRIGRAGRAG  109


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 61.9 bits (151),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 41/189 (22%), Positives = 81/189 (43%), Gaps = 36/189 (19%)

Query  334  YQEKSLSKMFG--NGRAKSGIIVLPCGAGKTLVGITAACTIK-------KGTIVLCTSSM  384
            YQ + ++ M    N   + GI+    G GKTL  I+    +K         T+++   S+
Sbjct  1    YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGPTLIVVPLSL  60

Query  385  SVVQWRNEFLRWSNIDPGDIAIFTSDNKER--------FRRSTGIIVSTYSMVSQTRARS  436
             +  W NEF RW +     + +   + + +        F     ++++TY  +       
Sbjct  61   -LHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYETL-------  112

Query  437  HDAQKMMDWMQSREWGLMILDEVHVV--PASMFRKVTSAIATQSKLGLTATLLREDDKIK  494
               +K  + ++   W  ++LDE H +    S   K   ++ T+++  LT T L+  + ++
Sbjct  113  ---RKHKELLKKVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQ--NNLE  167

Query  495  D----LNFL  499
            +    LNFL
Sbjct  168  ELWALLNFL  176



Lambda      K        H        a         alpha
   0.317    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1045054192


Query= TCONS_00043219

Length=623
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406585 pfam16203, ERCC3_RAD25_C, ERCC3/RAD25/XPB C-terminal h...  526     0.0  
CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res su...  75.0    3e-16
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  67.6    2e-14
CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  61.5    8e-11


>CDD:406585 pfam16203, ERCC3_RAD25_C, ERCC3/RAD25/XPB C-terminal helicase. 
 This is the C-terminal helicase domain of ERCC3, RAD25 and 
XPB helicases.
Length=248

 Score = 526 bits (1356),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/246 (75%), Positives = 210/246 (85%), Gaps = 1/246 (0%)

Query  312  LAEQGHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRG  371
            L E+GHIA VQCAEVWCPMT EFY EY+R KSRK  LLY+MNP KF+ACQFLI YHE+RG
Sbjct  1    LQEKGHIANVQCAEVWCPMTAEFYREYLRSKSRKKRLLYVMNPNKFRACQFLIRYHERRG  60

Query  372  DKVIVFSDNVYALERYALKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSL  431
            DK+IVFSDNV+AL+ YA KLNK YIYGGT Q ERMRIL+NF+HN  VNTIFLSK+GDTS+
Sbjct  61   DKIIVFSDNVFALKEYAKKLNKPYIYGGTSQAERMRILQNFKHNPNVNTIFLSKVGDTSI  120

Query  432  DLPEATCLIQISSHYGSRRQEAQRLGRILRAKRR-NDEGFNAFFYSLVSKDTDEMFYSSK  490
            DLPEA  LIQISSH+GSRRQEAQRLGRILRAKRR NDEGFNAFFYSLVSKDT EM+YS+K
Sbjct  121  DLPEANVLIQISSHFGSRRQEAQRLGRILRAKRRSNDEGFNAFFYSLVSKDTQEMYYSTK  180

Query  491  RQAFLVDQGYAFKVITHLQGIENLEGLAYATPAERRELLQEVMLQNETSAEVENVTDDLF  550
            RQ FLVDQGYAFKVIT+L G+E+ E LAY+T  E+ ELLQ+V+  N+T AE E + DDL 
Sbjct  181  RQQFLVDQGYAFKVITNLAGMEDEENLAYSTKEEQLELLQKVLAANDTDAEEEVIADDLG  240

Query  551  SERSGG  556
             +R GG
Sbjct  241  KDRKGG  246


>CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res subunit. 
 
Length=162

 Score = 75.0 bits (185),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 71/166 (43%), Gaps = 15/166 (9%)

Query  131  IRSYQE---KSLSKMFGNGRAKSGIIVLPCGAGKTLV--GITAACT---IKKGTIVLCTS  182
            +R YQ    ++L +   NG+ K G+IV+  G+GKTL    + A        K  + L   
Sbjct  4    LRPYQIEAIENLLESIKNGQ-KRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVLFLVPR  62

Query  183  SMSVVQWRNEFLRWSNIDPGDIAIFTSDNKERFRRSTGIIVSTYSMVSQTRARSHDAQKM  242
               + Q   EF ++         I + D K+       I+V+T   +   +A    + ++
Sbjct  63   KDLLEQALEEFKKFLPNYVEIGEIISGDKKDESVDDNKIVVTTIQSLY--KALELASLEL  120

Query  243  MDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQSKLGLTATLLR  288
            +       + ++I+DE H   AS +R +         LGLTAT  R
Sbjct  121  L----PDFFDVIIIDEAHRSGASSYRNILEYFKPAFLLGLTATPER  162


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 67.6 bits (166),  Expect = 2e-14, Method: Composition-based stats.
 Identities = 32/112 (29%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query  356  KFQACQFLIDYHEKRGDKVIVFSDNVYALERYALKLNK----AYIYGGTPQNERMRILEN  411
            K +A   L+   ++RG KV++FS     LE   L   +    A ++G   Q ER  ILE+
Sbjct  2    KLEALLELLK--KERGGKVLIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  412  FQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK  463
            F+  + ++ +  + + +  LDLP+   +I     + +     QR+GR  RA 
Sbjct  60   FRKGK-IDVLVATDVAERGLDLPDVDLVINYDLPW-NPASYIQRIGRAGRAG  109


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 61.5 bits (150),  Expect = 8e-11, Method: Composition-based stats.
 Identities = 41/189 (22%), Positives = 81/189 (43%), Gaps = 36/189 (19%)

Query  134  YQEKSLSKMFG--NGRAKSGIIVLPCGAGKTLVGITAACTIK-------KGTIVLCTSSM  184
            YQ + ++ M    N   + GI+    G GKTL  I+    +K         T+++   S+
Sbjct  1    YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGPTLIVVPLSL  60

Query  185  SVVQWRNEFLRWSNIDPGDIAIFTSDNKER--------FRRSTGIIVSTYSMVSQTRARS  236
             +  W NEF RW +     + +   + + +        F     ++++TY  +       
Sbjct  61   -LHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYETL-------  112

Query  237  HDAQKMMDWMQSREWGLMILDEVHVV--PASMFRKVTSAIATQSKLGLTATLLREDDKIK  294
               +K  + ++   W  ++LDE H +    S   K   ++ T+++  LT T L+  + ++
Sbjct  113  ---RKHKELLKKVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQ--NNLE  167

Query  295  D----LNFL  299
            +    LNFL
Sbjct  168  ELWALLNFL  176



Lambda      K        H        a         alpha
   0.318    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 793541268


Query= TCONS_00043220

Length=823
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406585 pfam16203, ERCC3_RAD25_C, ERCC3/RAD25/XPB C-terminal h...  529     0.0  
CDD:463939 pfam13625, Helicase_C_3, Helicase conserved C-terminal...  134     1e-37
CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res su...  75.0    3e-16
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  68.8    1e-14
CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  61.9    7e-11


>CDD:406585 pfam16203, ERCC3_RAD25_C, ERCC3/RAD25/XPB C-terminal helicase. 
 This is the C-terminal helicase domain of ERCC3, RAD25 and 
XPB helicases.
Length=248

 Score = 529 bits (1365),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/246 (75%), Positives = 210/246 (85%), Gaps = 1/246 (0%)

Query  512  LAEQGHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRG  571
            L E+GHIA VQCAEVWCPMT EFY EY+R KSRK  LLY+MNP KF+ACQFLI YHE+RG
Sbjct  1    LQEKGHIANVQCAEVWCPMTAEFYREYLRSKSRKKRLLYVMNPNKFRACQFLIRYHERRG  60

Query  572  DKVIVFSDNVYALERYALKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSL  631
            DK+IVFSDNV+AL+ YA KLNK YIYGGT Q ERMRIL+NF+HN  VNTIFLSK+GDTS+
Sbjct  61   DKIIVFSDNVFALKEYAKKLNKPYIYGGTSQAERMRILQNFKHNPNVNTIFLSKVGDTSI  120

Query  632  DLPEATCLIQISSHYGSRRQEAQRLGRILRAKRR-NDEGFNAFFYSLVSKDTDEMFYSSK  690
            DLPEA  LIQISSH+GSRRQEAQRLGRILRAKRR NDEGFNAFFYSLVSKDT EM+YS+K
Sbjct  121  DLPEANVLIQISSHFGSRRQEAQRLGRILRAKRRSNDEGFNAFFYSLVSKDTQEMYYSTK  180

Query  691  RQAFLVDQGYAFKVITHLQGIENLEGLAYATPAERRELLQEVMLQNETSAEVENVTDDLF  750
            RQ FLVDQGYAFKVIT+L G+E+ E LAY+T  E+ ELLQ+V+  N+T AE E + DDL 
Sbjct  181  RQQFLVDQGYAFKVITNLAGMEDEENLAYSTKEEQLELLQKVLAANDTDAEEEVIADDLG  240

Query  751  SERSGG  756
             +R GG
Sbjct  241  KDRKGG  246


>CDD:463939 pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. 
 This domain family is found in a wide variety of helicases 
and helicase-related proteins.
Length=121

 Score = 134 bits (341),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 49/120 (41%), Positives = 67/120 (56%), Gaps = 5/120 (4%)

Query  92   LWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLHEYRLTGNSLYAAVSVGLQPT  151
            L +     TI L    PLAP+A+DFL   AE  SR  H H YRLT  SL  A+  GL   
Sbjct  1    LIVQA-DLTILLPG--PLAPEARDFLAAFAELESR-GHAHTYRLTPLSLRRALDAGLTAE  56

Query  152  DIINFLDRLSKTPLPDTVKSFIIDFTKSFGKIKVVLKHNRFFVESTDPAMLQMLLQDEVI  211
            DI++FL+R SK P+P  ++  I D  +  G++++ L     ++ S DPA+L  LL D  I
Sbjct  57   DILDFLERHSKYPVPQALEYLIRDVARRHGRLRLGL-GASSYLRSDDPAVLAELLADPRI  115


>CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res subunit. 
 
Length=162

 Score = 75.0 bits (185),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 71/166 (43%), Gaps = 15/166 (9%)

Query  331  IRSYQE---KSLSKMFGNGRAKSGIIVLPCGAGKTLV--GITAACT---IKKGTIVLCTS  382
            +R YQ    ++L +   NG+ K G+IV+  G+GKTL    + A        K  + L   
Sbjct  4    LRPYQIEAIENLLESIKNGQ-KRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVLFLVPR  62

Query  383  SMSVVQWRNEFLRWSNIDPGDIAIFTSDNKERFRRSTGIIVSTYSMVSQTRARSHDAQKM  442
               + Q   EF ++         I + D K+       I+V+T   +   +A    + ++
Sbjct  63   KDLLEQALEEFKKFLPNYVEIGEIISGDKKDESVDDNKIVVTTIQSLY--KALELASLEL  120

Query  443  MDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQSKLGLTATLLR  488
            +       + ++I+DE H   AS +R +         LGLTAT  R
Sbjct  121  L----PDFFDVIIIDEAHRSGASSYRNILEYFKPAFLLGLTATPER  162


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 68.8 bits (169),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 32/112 (29%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query  556  KFQACQFLIDYHEKRGDKVIVFSDNVYALERYALKLNK----AYIYGGTPQNERMRILEN  611
            K +A   L+   ++RG KV++FS     LE   L   +    A ++G   Q ER  ILE+
Sbjct  2    KLEALLELLK--KERGGKVLIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  612  FQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK  663
            F+  + ++ +  + + +  LDLP+   +I     + +     QR+GR  RA 
Sbjct  60   FRKGK-IDVLVATDVAERGLDLPDVDLVINYDLPW-NPASYIQRIGRAGRAG  109


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 61.9 bits (151),  Expect = 7e-11, Method: Composition-based stats.
 Identities = 41/189 (22%), Positives = 81/189 (43%), Gaps = 36/189 (19%)

Query  334  YQEKSLSKMFG--NGRAKSGIIVLPCGAGKTLVGITAACTIK-------KGTIVLCTSSM  384
            YQ + ++ M    N   + GI+    G GKTL  I+    +K         T+++   S+
Sbjct  1    YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGPTLIVVPLSL  60

Query  385  SVVQWRNEFLRWSNIDPGDIAIFTSDNKER--------FRRSTGIIVSTYSMVSQTRARS  436
             +  W NEF RW +     + +   + + +        F     ++++TY  +       
Sbjct  61   -LHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYETL-------  112

Query  437  HDAQKMMDWMQSREWGLMILDEVHVV--PASMFRKVTSAIATQSKLGLTATLLREDDKIK  494
               +K  + ++   W  ++LDE H +    S   K   ++ T+++  LT T L+  + ++
Sbjct  113  ---RKHKELLKKVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQ--NNLE  167

Query  495  D----LNFL  499
            +    LNFL
Sbjct  168  ELWALLNFL  176



Lambda      K        H        a         alpha
   0.317    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1045054192


Query= TCONS_00037726

Length=780
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406585 pfam16203, ERCC3_RAD25_C, ERCC3/RAD25/XPB C-terminal h...  532     0.0  
CDD:463939 pfam13625, Helicase_C_3, Helicase conserved C-terminal...  134     1e-37
CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res su...  75.8    2e-16
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  68.8    1e-14
CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  62.3    6e-11


>CDD:406585 pfam16203, ERCC3_RAD25_C, ERCC3/RAD25/XPB C-terminal helicase. 
 This is the C-terminal helicase domain of ERCC3, RAD25 and 
XPB helicases.
Length=248

 Score = 532 bits (1372),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/246 (75%), Positives = 210/246 (85%), Gaps = 1/246 (0%)

Query  513  LAEQGHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRG  572
            L E+GHIA VQCAEVWCPMT EFY EY+R KSRK  LLY+MNP KF+ACQFLI YHE+RG
Sbjct  1    LQEKGHIANVQCAEVWCPMTAEFYREYLRSKSRKKRLLYVMNPNKFRACQFLIRYHERRG  60

Query  573  DKVIVFSDNVYALERYALKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSL  632
            DK+IVFSDNV+AL+ YA KLNK YIYGGT Q ERMRIL+NF+HN  VNTIFLSK+GDTS+
Sbjct  61   DKIIVFSDNVFALKEYAKKLNKPYIYGGTSQAERMRILQNFKHNPNVNTIFLSKVGDTSI  120

Query  633  DLPEATCLIQISSHYGSRRQEAQRLGRILRAKRR-NDEGFNAFFYSLVSKDTDEMFYSSK  691
            DLPEA  LIQISSH+GSRRQEAQRLGRILRAKRR NDEGFNAFFYSLVSKDT EM+YS+K
Sbjct  121  DLPEANVLIQISSHFGSRRQEAQRLGRILRAKRRSNDEGFNAFFYSLVSKDTQEMYYSTK  180

Query  692  RQAFLVDQGYAFKVITHLQGIENLEGLAYATPAERRELLQEVMLQNETSAEVENVTDDLF  751
            RQ FLVDQGYAFKVIT+L G+E+ E LAY+T  E+ ELLQ+V+  N+T AE E + DDL 
Sbjct  181  RQQFLVDQGYAFKVITNLAGMEDEENLAYSTKEEQLELLQKVLAANDTDAEEEVIADDLG  240

Query  752  SERSGG  757
             +R GG
Sbjct  241  KDRKGG  246


>CDD:463939 pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. 
 This domain family is found in a wide variety of helicases 
and helicase-related proteins.
Length=121

 Score = 134 bits (341),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 49/120 (41%), Positives = 67/120 (56%), Gaps = 5/120 (4%)

Query  93   LWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLHEYRLTGNSLYAAVSVGLQPT  152
            L +     TI L    PLAP+A+DFL   AE  SR  H H YRLT  SL  A+  GL   
Sbjct  1    LIVQA-DLTILLPG--PLAPEARDFLAAFAELESR-GHAHTYRLTPLSLRRALDAGLTAE  56

Query  153  DIINFLDRLSKTPLPDTVKSFIIDFTKSFGKIKVVLKHNRFFVESTDPAMLQMLLQDEVI  212
            DI++FL+R SK P+P  ++  I D  +  G++++ L     ++ S DPA+L  LL D  I
Sbjct  57   DILDFLERHSKYPVPQALEYLIRDVARRHGRLRLGL-GASSYLRSDDPAVLAELLADPRI  115


>CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res subunit. 
 
Length=162

 Score = 75.8 bits (187),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 71/166 (43%), Gaps = 15/166 (9%)

Query  332  IRSYQE---KSLSKMFGNGRAKSGIIVLPCGAGKTLV--GITAACT---IKKGTIVLCTS  383
            +R YQ    ++L +   NG+ K G+IV+  G+GKTL    + A        K  + L   
Sbjct  4    LRPYQIEAIENLLESIKNGQ-KRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVLFLVPR  62

Query  384  SMSVVQWRNEFLRWSNIDPGDIAIFTSDNKERFRRSTGIIVSTYSMVSQTRARSHDAQKM  443
               + Q   EF ++         I + D K+       I+V+T   +   +A    + ++
Sbjct  63   KDLLEQALEEFKKFLPNYVEIGEIISGDKKDESVDDNKIVVTTIQSLY--KALELASLEL  120

Query  444  MDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQSKLGLTATLLR  489
            +       + ++I+DE H   AS +R +         LGLTAT  R
Sbjct  121  L----PDFFDVIIIDEAHRSGASSYRNILEYFKPAFLLGLTATPER  162


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 68.8 bits (169),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 32/112 (29%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query  557  KFQACQFLIDYHEKRGDKVIVFSDNVYALERYALKLNK----AYIYGGTPQNERMRILEN  612
            K +A   L+   ++RG KV++FS     LE   L   +    A ++G   Q ER  ILE+
Sbjct  2    KLEALLELLK--KERGGKVLIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  613  FQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK  664
            F+  + ++ +  + + +  LDLP+   +I     + +     QR+GR  RA 
Sbjct  60   FRKGK-IDVLVATDVAERGLDLPDVDLVINYDLPW-NPASYIQRIGRAGRAG  109


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 62.3 bits (152),  Expect = 6e-11, Method: Composition-based stats.
 Identities = 41/189 (22%), Positives = 81/189 (43%), Gaps = 36/189 (19%)

Query  335  YQEKSLSKMFG--NGRAKSGIIVLPCGAGKTLVGITAACTIK-------KGTIVLCTSSM  385
            YQ + ++ M    N   + GI+    G GKTL  I+    +K         T+++   S+
Sbjct  1    YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGPTLIVVPLSL  60

Query  386  SVVQWRNEFLRWSNIDPGDIAIFTSDNKER--------FRRSTGIIVSTYSMVSQTRARS  437
             +  W NEF RW +     + +   + + +        F     ++++TY  +       
Sbjct  61   -LHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYETL-------  112

Query  438  HDAQKMMDWMQSREWGLMILDEVHVV--PASMFRKVTSAIATQSKLGLTATLLREDDKIK  495
               +K  + ++   W  ++LDE H +    S   K   ++ T+++  LT T L+  + ++
Sbjct  113  ---RKHKELLKKVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQ--NNLE  167

Query  496  D----LNFL  500
            +    LNFL
Sbjct  168  ELWALLNFL  176



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 998234272


Query= TCONS_00037727

Length=830
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406585 pfam16203, ERCC3_RAD25_C, ERCC3/RAD25/XPB C-terminal h...  529     0.0  
CDD:463939 pfam13625, Helicase_C_3, Helicase conserved C-terminal...  134     1e-37
CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res su...  75.0    3e-16
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  68.4    1e-14
CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  61.9    9e-11


>CDD:406585 pfam16203, ERCC3_RAD25_C, ERCC3/RAD25/XPB C-terminal helicase. 
 This is the C-terminal helicase domain of ERCC3, RAD25 and 
XPB helicases.
Length=248

 Score = 529 bits (1366),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/246 (75%), Positives = 210/246 (85%), Gaps = 1/246 (0%)

Query  519  LAEQGHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRG  578
            L E+GHIA VQCAEVWCPMT EFY EY+R KSRK  LLY+MNP KF+ACQFLI YHE+RG
Sbjct  1    LQEKGHIANVQCAEVWCPMTAEFYREYLRSKSRKKRLLYVMNPNKFRACQFLIRYHERRG  60

Query  579  DKVIVFSDNVYALERYALKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSL  638
            DK+IVFSDNV+AL+ YA KLNK YIYGGT Q ERMRIL+NF+HN  VNTIFLSK+GDTS+
Sbjct  61   DKIIVFSDNVFALKEYAKKLNKPYIYGGTSQAERMRILQNFKHNPNVNTIFLSKVGDTSI  120

Query  639  DLPEATCLIQISSHYGSRRQEAQRLGRILRAKRR-NDEGFNAFFYSLVSKDTDEMFYSSK  697
            DLPEA  LIQISSH+GSRRQEAQRLGRILRAKRR NDEGFNAFFYSLVSKDT EM+YS+K
Sbjct  121  DLPEANVLIQISSHFGSRRQEAQRLGRILRAKRRSNDEGFNAFFYSLVSKDTQEMYYSTK  180

Query  698  RQAFLVDQGYAFKVITHLQGIENLEGLAYATPAERRELLQEVMLQNETSAEVENVTDDLF  757
            RQ FLVDQGYAFKVIT+L G+E+ E LAY+T  E+ ELLQ+V+  N+T AE E + DDL 
Sbjct  181  RQQFLVDQGYAFKVITNLAGMEDEENLAYSTKEEQLELLQKVLAANDTDAEEEVIADDLG  240

Query  758  SERSGG  763
             +R GG
Sbjct  241  KDRKGG  246


>CDD:463939 pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. 
 This domain family is found in a wide variety of helicases 
and helicase-related proteins.
Length=121

 Score = 134 bits (341),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 49/120 (41%), Positives = 67/120 (56%), Gaps = 5/120 (4%)

Query  99   LWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLHEYRLTGNSLYAAVSVGLQPT  158
            L +     TI L    PLAP+A+DFL   AE  SR  H H YRLT  SL  A+  GL   
Sbjct  1    LIVQA-DLTILLPG--PLAPEARDFLAAFAELESR-GHAHTYRLTPLSLRRALDAGLTAE  56

Query  159  DIINFLDRLSKTPLPDTVKSFIIDFTKSFGKIKVVLKHNRFFVESTDPAMLQMLLQDEVI  218
            DI++FL+R SK P+P  ++  I D  +  G++++ L     ++ S DPA+L  LL D  I
Sbjct  57   DILDFLERHSKYPVPQALEYLIRDVARRHGRLRLGL-GASSYLRSDDPAVLAELLADPRI  115


>CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res subunit. 
 
Length=162

 Score = 75.0 bits (185),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 71/166 (43%), Gaps = 15/166 (9%)

Query  338  IRSYQE---KSLSKMFGNGRAKSGIIVLPCGAGKTLV--GITAACT---IKKGTIVLCTS  389
            +R YQ    ++L +   NG+ K G+IV+  G+GKTL    + A        K  + L   
Sbjct  4    LRPYQIEAIENLLESIKNGQ-KRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVLFLVPR  62

Query  390  SMSVVQWRNEFLRWSNIDPGDIAIFTSDNKERFRRSTGIIVSTYSMVSQTRARSHDAQKM  449
               + Q   EF ++         I + D K+       I+V+T   +   +A    + ++
Sbjct  63   KDLLEQALEEFKKFLPNYVEIGEIISGDKKDESVDDNKIVVTTIQSLY--KALELASLEL  120

Query  450  MDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQSKLGLTATLLR  495
            +       + ++I+DE H   AS +R +         LGLTAT  R
Sbjct  121  L----PDFFDVIIIDEAHRSGASSYRNILEYFKPAFLLGLTATPER  162


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 68.4 bits (168),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 32/112 (29%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query  563  KFQACQFLIDYHEKRGDKVIVFSDNVYALERYALKLNK----AYIYGGTPQNERMRILEN  618
            K +A   L+   ++RG KV++FS     LE   L   +    A ++G   Q ER  ILE+
Sbjct  2    KLEALLELLK--KERGGKVLIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  619  FQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK  670
            F+  + ++ +  + + +  LDLP+   +I     + +     QR+GR  RA 
Sbjct  60   FRKGK-IDVLVATDVAERGLDLPDVDLVINYDLPW-NPASYIQRIGRAGRAG  109


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 61.9 bits (151),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 41/189 (22%), Positives = 81/189 (43%), Gaps = 36/189 (19%)

Query  341  YQEKSLSKMFG--NGRAKSGIIVLPCGAGKTLVGITAACTIK-------KGTIVLCTSSM  391
            YQ + ++ M    N   + GI+    G GKTL  I+    +K         T+++   S+
Sbjct  1    YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGPTLIVVPLSL  60

Query  392  SVVQWRNEFLRWSNIDPGDIAIFTSDNKER--------FRRSTGIIVSTYSMVSQTRARS  443
             +  W NEF RW +     + +   + + +        F     ++++TY  +       
Sbjct  61   -LHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYETL-------  112

Query  444  HDAQKMMDWMQSREWGLMILDEVHVV--PASMFRKVTSAIATQSKLGLTATLLREDDKIK  501
               +K  + ++   W  ++LDE H +    S   K   ++ T+++  LT T L+  + ++
Sbjct  113  ---RKHKELLKKVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQ--NNLE  167

Query  502  D----LNFL  506
            +    LNFL
Sbjct  168  ELWALLNFL  176



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1055102790


Query= TCONS_00043221

Length=824
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:406585 pfam16203, ERCC3_RAD25_C, ERCC3/RAD25/XPB C-terminal h...  529     0.0  
CDD:463939 pfam13625, Helicase_C_3, Helicase conserved C-terminal...  134     1e-37
CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res su...  75.0    3e-16
CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal d...  68.8    1e-14
CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain. This...  61.9    9e-11


>CDD:406585 pfam16203, ERCC3_RAD25_C, ERCC3/RAD25/XPB C-terminal helicase. 
 This is the C-terminal helicase domain of ERCC3, RAD25 and 
XPB helicases.
Length=248

 Score = 529 bits (1366),  Expect = 0.0, Method: Composition-based stats.
 Identities = 185/246 (75%), Positives = 210/246 (85%), Gaps = 1/246 (0%)

Query  513  LAEQGHIAKVQCAEVWCPMTTEFYTEYMREKSRKAALLYIMNPRKFQACQFLIDYHEKRG  572
            L E+GHIA VQCAEVWCPMT EFY EY+R KSRK  LLY+MNP KF+ACQFLI YHE+RG
Sbjct  1    LQEKGHIANVQCAEVWCPMTAEFYREYLRSKSRKKRLLYVMNPNKFRACQFLIRYHERRG  60

Query  573  DKVIVFSDNVYALERYALKLNKAYIYGGTPQNERMRILENFQHNEQVNTIFLSKIGDTSL  632
            DK+IVFSDNV+AL+ YA KLNK YIYGGT Q ERMRIL+NF+HN  VNTIFLSK+GDTS+
Sbjct  61   DKIIVFSDNVFALKEYAKKLNKPYIYGGTSQAERMRILQNFKHNPNVNTIFLSKVGDTSI  120

Query  633  DLPEATCLIQISSHYGSRRQEAQRLGRILRAKRR-NDEGFNAFFYSLVSKDTDEMFYSSK  691
            DLPEA  LIQISSH+GSRRQEAQRLGRILRAKRR NDEGFNAFFYSLVSKDT EM+YS+K
Sbjct  121  DLPEANVLIQISSHFGSRRQEAQRLGRILRAKRRSNDEGFNAFFYSLVSKDTQEMYYSTK  180

Query  692  RQAFLVDQGYAFKVITHLQGIENLEGLAYATPAERRELLQEVMLQNETSAEVENVTDDLF  751
            RQ FLVDQGYAFKVIT+L G+E+ E LAY+T  E+ ELLQ+V+  N+T AE E + DDL 
Sbjct  181  RQQFLVDQGYAFKVITNLAGMEDEENLAYSTKEEQLELLQKVLAANDTDAEEEVIADDLG  240

Query  752  SERSGG  757
             +R GG
Sbjct  241  KDRKGG  246


>CDD:463939 pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. 
 This domain family is found in a wide variety of helicases 
and helicase-related proteins.
Length=121

 Score = 134 bits (341),  Expect = 1e-37, Method: Composition-based stats.
 Identities = 49/120 (41%), Positives = 67/120 (56%), Gaps = 5/120 (4%)

Query  93   LWIDPLKGTITLESFSPLAPQAQDFLTTIAEPLSRPTHLHEYRLTGNSLYAAVSVGLQPT  152
            L +     TI L    PLAP+A+DFL   AE  SR  H H YRLT  SL  A+  GL   
Sbjct  1    LIVQA-DLTILLPG--PLAPEARDFLAAFAELESR-GHAHTYRLTPLSLRRALDAGLTAE  56

Query  153  DIINFLDRLSKTPLPDTVKSFIIDFTKSFGKIKVVLKHNRFFVESTDPAMLQMLLQDEVI  212
            DI++FL+R SK P+P  ++  I D  +  G++++ L     ++ S DPA+L  LL D  I
Sbjct  57   DILDFLERHSKYPVPQALEYLIRDVARRHGRLRLGL-GASSYLRSDDPAVLAELLADPRI  115


>CDD:398492 pfam04851, ResIII, Type III restriction enzyme, res subunit. 
 
Length=162

 Score = 75.0 bits (185),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 71/166 (43%), Gaps = 15/166 (9%)

Query  332  IRSYQE---KSLSKMFGNGRAKSGIIVLPCGAGKTLV--GITAACT---IKKGTIVLCTS  383
            +R YQ    ++L +   NG+ K G+IV+  G+GKTL    + A        K  + L   
Sbjct  4    LRPYQIEAIENLLESIKNGQ-KRGLIVMATGSGKTLTAAKLIARLFKKGPIKKVLFLVPR  62

Query  384  SMSVVQWRNEFLRWSNIDPGDIAIFTSDNKERFRRSTGIIVSTYSMVSQTRARSHDAQKM  443
               + Q   EF ++         I + D K+       I+V+T   +   +A    + ++
Sbjct  63   KDLLEQALEEFKKFLPNYVEIGEIISGDKKDESVDDNKIVVTTIQSLY--KALELASLEL  120

Query  444  MDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQSKLGLTATLLR  489
            +       + ++I+DE H   AS +R +         LGLTAT  R
Sbjct  121  L----PDFFDVIIIDEAHRSGASSYRNILEYFKPAFLLGLTATPER  162


>CDD:459740 pfam00271, Helicase_C, Helicase conserved C-terminal domain. 
 The Prosite family is restricted to DEAD/H helicases, whereas 
this domain family is found in a wide variety of helicases 
and helicase related proteins. It may be that this is not 
an autonomously folding unit, but an integral part of the helicase.
Length=109

 Score = 68.8 bits (169),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 32/112 (29%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query  557  KFQACQFLIDYHEKRGDKVIVFSDNVYALERYALKLNK----AYIYGGTPQNERMRILEN  612
            K +A   L+   ++RG KV++FS     LE   L   +    A ++G   Q ER  ILE+
Sbjct  2    KLEALLELLK--KERGGKVLIFSQTKKTLEAELLLEKEGIKVARLHGDLSQEEREEILED  59

Query  613  FQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK  664
            F+  + ++ +  + + +  LDLP+   +I     + +     QR+GR  RA 
Sbjct  60   FRKGK-IDVLVATDVAERGLDLPDVDLVINYDLPW-NPASYIQRIGRAGRAG  109


>CDD:425504 pfam00176, SNF2_N, SNF2 family N-terminal domain.  This domain 
is found in proteins involved in a variety of processes including 
transcription regulation (e.g., SNF2, STH1, brahma, 
MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination 
(e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well 
as a variety of other proteins with little functional information 
(e.g., lodestar, ETL1).
Length=289

 Score = 61.9 bits (151),  Expect = 9e-11, Method: Composition-based stats.
 Identities = 41/189 (22%), Positives = 81/189 (43%), Gaps = 36/189 (19%)

Query  335  YQEKSLSKMFG--NGRAKSGIIVLPCGAGKTLVGITAACTIK-------KGTIVLCTSSM  385
            YQ + ++ M    N   + GI+    G GKTL  I+    +K         T+++   S+
Sbjct  1    YQIEGVNWMLSLENNLGRGGILADEMGLGKTLQTISLLLYLKHVDKNWGGPTLIVVPLSL  60

Query  386  SVVQWRNEFLRWSNIDPGDIAIFTSDNKER--------FRRSTGIIVSTYSMVSQTRARS  437
             +  W NEF RW +     + +   + + +        F     ++++TY  +       
Sbjct  61   -LHNWMNEFERWVSPPALRVVVLHGNKRPQERWKNDPNFLADFDVVITTYETL-------  112

Query  438  HDAQKMMDWMQSREWGLMILDEVHVV--PASMFRKVTSAIATQSKLGLTATLLREDDKIK  495
               +K  + ++   W  ++LDE H +    S   K   ++ T+++  LT T L+  + ++
Sbjct  113  ---RKHKELLKKVHWHRIVLDEGHRLKNSKSKLSKALKSLKTRNRWILTGTPLQ--NNLE  167

Query  496  D----LNFL  500
            +    LNFL
Sbjct  168  ELWALLNFL  176



Lambda      K        H        a         alpha
   0.317    0.133    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1046489706


Query= TCONS_00037728

Length=498


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00043222

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF42...  105     8e-29


>CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF4243).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and eukaryotes. Proteins 
in this family are typically between 348 and 477 amino 
acids in length.
Length=336

 Score = 105 bits (265),  Expect = 8e-29, Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 8/91 (9%)

Query  1    MHCVTSSIFLSKIVT-LPYLDTRTKLRLLEWKGRADLVFYVSRGVPDLLLEEVTTYEA--  57
            MH VTSS+FL  ++  LP++   +K RLL WK R DL  YV+RG P+L L+E+  Y    
Sbjct  248  MHLVTSSLFLRSLLPLLPWIHPSSKARLLRWKWRLDLAVYVARGRPELDLDEIRAYFPKY  307

Query  58   ---PNDWKTIFYESSVHPRDDGHLSKLVRAL  85
                NDW+ I         DDGH+ KLVRAL
Sbjct  308  LSPGNDWEEIV--QKALWHDDGHVVKLVRAL  336



Lambda      K        H        a         alpha
   0.324    0.138    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 122480540


Query= TCONS_00037729

Length=359
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF42...  318     3e-108


>CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF4243).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and eukaryotes. Proteins 
in this family are typically between 348 and 477 amino 
acids in length.
Length=336

 Score = 318 bits (817),  Expect = 3e-108, Method: Composition-based stats.
 Identities = 115/230 (50%), Positives = 147/230 (64%), Gaps = 10/230 (4%)

Query  115  FHNHIVHHILTIYALGATPDEIRAAYDHNKTYQRPVLPTTQSIVESMHDKTQFQQHLGKE  174
            FHNHI HH+L  YALGA+P++++AAYD N +YQRP  P+  +    +  +  ++ HLG E
Sbjct  1    FHNHIPHHLLAAYALGASPEQLQAAYDANASYQRPAEPSDPAD---LITEENWRDHLGDE  57

Query  175  ENFPNYLAFFQQEIEKKGVAVVLNEYLFSGSECAENMFSRLFGGLLHPLIHIGFGLEFDQ  234
            E +  +L FF+ EI +KG   VL EYLFSG+E AE M +RLFGGLLHPLIH+G+GLEF Q
Sbjct  58   EYYRAFLDFFEDEIARKGWKAVLEEYLFSGNEGAEPMLNRLFGGLLHPLIHLGYGLEFGQ  117

Query  235  PAIVAEGLAQTAVHEDWIGQLYLLPGEKAAGGIGK---PGKKSLLQILNEIRTDKRLAES  291
            PAIVAE LAQ AVH D      LL  EKAA        P   SLL+IL+ +  D RL  +
Sbjct  118  PAIVAEALAQAAVHYDDDPSELLLSAEKAAASYTGAPSPYGTSLLEILDRVLRDPRLDGA  177

Query  292  VKWAD--GNKIRDGVLKRAPEEMIRYAAQVSVSAE--QMEDKLAELLNLV  337
             +  D   NKIRDGVLKRA +E++ YA    VS +   +E+K  EL    
Sbjct  178  GRNEDPLFNKIRDGVLKRAGDEILEYANAWRVSPDEDPLEEKFEELQWAA  227



Lambda      K        H        a         alpha
   0.319    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00043223

Length=359
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF42...  318     3e-108


>CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF4243).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and eukaryotes. Proteins 
in this family are typically between 348 and 477 amino 
acids in length.
Length=336

 Score = 318 bits (817),  Expect = 3e-108, Method: Composition-based stats.
 Identities = 115/230 (50%), Positives = 147/230 (64%), Gaps = 10/230 (4%)

Query  115  FHNHIVHHILTIYALGATPDEIRAAYDHNKTYQRPVLPTTQSIVESMHDKTQFQQHLGKE  174
            FHNHI HH+L  YALGA+P++++AAYD N +YQRP  P+  +    +  +  ++ HLG E
Sbjct  1    FHNHIPHHLLAAYALGASPEQLQAAYDANASYQRPAEPSDPAD---LITEENWRDHLGDE  57

Query  175  ENFPNYLAFFQQEIEKKGVAVVLNEYLFSGSECAENMFSRLFGGLLHPLIHIGFGLEFDQ  234
            E +  +L FF+ EI +KG   VL EYLFSG+E AE M +RLFGGLLHPLIH+G+GLEF Q
Sbjct  58   EYYRAFLDFFEDEIARKGWKAVLEEYLFSGNEGAEPMLNRLFGGLLHPLIHLGYGLEFGQ  117

Query  235  PAIVAEGLAQTAVHEDWIGQLYLLPGEKAAGGIGK---PGKKSLLQILNEIRTDKRLAES  291
            PAIVAE LAQ AVH D      LL  EKAA        P   SLL+IL+ +  D RL  +
Sbjct  118  PAIVAEALAQAAVHYDDDPSELLLSAEKAAASYTGAPSPYGTSLLEILDRVLRDPRLDGA  177

Query  292  VKWAD--GNKIRDGVLKRAPEEMIRYAAQVSVSAE--QMEDKLAELLNLV  337
             +  D   NKIRDGVLKRA +E++ YA    VS +   +E+K  EL    
Sbjct  178  GRNEDPLFNKIRDGVLKRAGDEILEYANAWRVSPDEDPLEEKFEELQWAA  227



Lambda      K        H        a         alpha
   0.319    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 426277580


Query= TCONS_00043224

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF42...  291     2e-98


>CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF4243).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and eukaryotes. Proteins 
in this family are typically between 348 and 477 amino 
acids in length.
Length=336

 Score = 291 bits (746),  Expect = 2e-98, Method: Composition-based stats.
 Identities = 118/238 (50%), Positives = 144/238 (61%), Gaps = 15/238 (6%)

Query  15   GLLHPLIHIGFGLEFDQPAIVAEGLAQTAVHEDWIGQLYLLPGEKAAGGIGK---PGKKS  71
            GLLHPLIH+G+GLEF QPAIVAE LAQ AVH D      LL  EKAA        P   S
Sbjct  101  GLLHPLIHLGYGLEFGQPAIVAEALAQAAVHYDDDPSELLLSAEKAAASYTGAPSPYGTS  160

Query  72   LLQILNEIRTDKRLAESVKWAD--GNKIRDGVLKRAPEEMIRYAAQVSVSAE--QMEDKL  127
            LL+IL+ +  D RL  + +  D   NKIRDGVLKRA +E++ YA    VS +   +E+K 
Sbjct  161  LLEILDRVLRDPRLDGAGRNEDPLFNKIRDGVLKRAGDEILEYANAWRVSPDEDPLEEKF  220

Query  128  AELLNLVAYFTGAAQRPPKQVKLDFFLMHCVTSSIFLSKIVT-LPYLDTRTKLRLLEWKG  186
             EL        GAAQRPPK+ K DFFLMH VTSS+FL  ++  LP++   +K RLL WK 
Sbjct  221  EELQWAAVLLYGAAQRPPKKPKYDFFLMHLVTSSLFLRSLLPLLPWIHPSSKARLLRWKW  280

Query  187  RADLVFYVSRGVPDLLLEEVTTYEA-----PNDWKTIFYESSVHPRDDGHLSKLVRAL  239
            R DL  YV+RG P+L L+E+  Y        NDW+ I         DDGH+ KLVRAL
Sbjct  281  RLDLAVYVARGRPELDLDEIRAYFPKYLSPGNDWEEIV--QKALWHDDGHVVKLVRAL  336



Lambda      K        H        a         alpha
   0.322    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00037730

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF42...  454     3e-159


>CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF4243).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and eukaryotes. Proteins 
in this family are typically between 348 and 477 amino 
acids in length.
Length=336

 Score = 454 bits (1169),  Expect = 3e-159, Method: Composition-based stats.
 Identities = 170/341 (50%), Positives = 215/341 (63%), Gaps = 18/341 (5%)

Query  115  FHNHIVHHILTIYALGATPDEIRAAYDHNKTYQRPVLPTTQSIVESMHDKTQFQQHLGKE  174
            FHNHI HH+L  YALGA+P++++AAYD N +YQRP  P+  +    +  +  ++ HLG E
Sbjct  1    FHNHIPHHLLAAYALGASPEQLQAAYDANASYQRPAEPSDPAD---LITEENWRDHLGDE  57

Query  175  ENFPNYLAFFQQEIEKKGVAVVLNEYLFSGSECAENMFSRLFGGLLHPLIHIGFGLEFDQ  234
            E +  +L FF+ EI +KG   VL EYLFSG+E AE M +RLFGGLLHPLIH+G+GLEF Q
Sbjct  58   EYYRAFLDFFEDEIARKGWKAVLEEYLFSGNEGAEPMLNRLFGGLLHPLIHLGYGLEFGQ  117

Query  235  PAIVAEGLAQTAVHEDWIGQLYLLPGEKAAGGIGK---PGKKSLLQILNEIRTDKRLAES  291
            PAIVAE LAQ AVH D      LL  EKAA        P   SLL+IL+ +  D RL  +
Sbjct  118  PAIVAEALAQAAVHYDDDPSELLLSAEKAAASYTGAPSPYGTSLLEILDRVLRDPRLDGA  177

Query  292  VKWAD--GNKIRDGVLKRAPEEMIRYAAQVSVSAE--QMEDKLAELLNLVAYFTGAAQRP  347
             +  D   NKIRDGVLKRA +E++ YA    VS +   +E+K  EL        GAAQRP
Sbjct  178  GRNEDPLFNKIRDGVLKRAGDEILEYANAWRVSPDEDPLEEKFEELQWAAVLLYGAAQRP  237

Query  348  PKQVKLDFFLMHCVTSSIFLSKIVT-LPYLDTRTKLRLLEWKGRADLVFYVSRGVPDLLL  406
            PK+ K DFFLMH VTSS+FL  ++  LP++   +K RLL WK R DL  YV+RG P+L L
Sbjct  238  PKKPKYDFFLMHLVTSSLFLRSLLPLLPWIHPSSKARLLRWKWRLDLAVYVARGRPELDL  297

Query  407  EEVTTYEA-----PNDWKTIFYESSVHPRDDGHLSKLVRAL  442
            +E+  Y        NDW+ I         DDGH+ KLVRAL
Sbjct  298  DEIRAYFPKYLSPGNDWEEIV--QKALWHDDGHVVKLVRAL  336



Lambda      K        H        a         alpha
   0.320    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 629851456


Query= TCONS_00037731

Length=155
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF42...  223     3e-74


>CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF4243).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and eukaryotes. Proteins 
in this family are typically between 348 and 477 amino 
acids in length.
Length=336

 Score = 223 bits (570),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 83/158 (53%), Positives = 103/158 (65%), Gaps = 5/158 (3%)

Query  1    MHDKTQFQQHLGKEENFPNYLAFFQQEIEKKGVAVVLNEYLFSGSECAENMFSRLFGGLL  60
            +  +  ++ HLG EE +  +L FF+ EI +KG   VL EYLFSG+E AE M +RLFGGLL
Sbjct  44   LITEENWRDHLGDEEYYRAFLDFFEDEIARKGWKAVLEEYLFSGNEGAEPMLNRLFGGLL  103

Query  61   HPLIHIGFGLEFDQPAIVAEGLAQTAVHEDWIGQLYLLPGEKAAGGIGK---PGKKSLLQ  117
            HPLIH+G+GLEF QPAIVAE LAQ AVH D      LL  EKAA        P   SLL+
Sbjct  104  HPLIHLGYGLEFGQPAIVAEALAQAAVHYDDDPSELLLSAEKAAASYTGAPSPYGTSLLE  163

Query  118  ILNEIRTDKRLAESVKWAD--GNKIRDGVLKRAPEEMI  153
            IL+ +  D RL  + +  D   NKIRDGVLKRA +E++
Sbjct  164  ILDRVLRDPRLDGAGRNEDPLFNKIRDGVLKRAGDEIL  201



Lambda      K        H        a         alpha
   0.319    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0653    0.140     1.90     42.6     43.6 

Effective search space used: 129756300


Query= TCONS_00037732

Length=498


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.131    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 616224862


Query= TCONS_00037733

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF42...  454     2e-159


>CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF4243).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and eukaryotes. Proteins 
in this family are typically between 348 and 477 amino 
acids in length.
Length=336

 Score = 454 bits (1170),  Expect = 2e-159, Method: Composition-based stats.
 Identities = 170/341 (50%), Positives = 215/341 (63%), Gaps = 18/341 (5%)

Query  115  FHNHIVHHILTIYALGATPDEIRAAYDHNKTYQRPVLPTTQSIVESMHDKTQFQQHLGKE  174
            FHNHI HH+L  YALGA+P++++AAYD N +YQRP  P+  +    +  +  ++ HLG E
Sbjct  1    FHNHIPHHLLAAYALGASPEQLQAAYDANASYQRPAEPSDPAD---LITEENWRDHLGDE  57

Query  175  ENFPNYLAFFQQEIEKKGVAVVLNEYLFSGSECAENMFSRLFGGLLHPLIHIGFGLEFDQ  234
            E +  +L FF+ EI +KG   VL EYLFSG+E AE M +RLFGGLLHPLIH+G+GLEF Q
Sbjct  58   EYYRAFLDFFEDEIARKGWKAVLEEYLFSGNEGAEPMLNRLFGGLLHPLIHLGYGLEFGQ  117

Query  235  PAIVAEGLAQTAVHEDWIGQLYLLPGEKAAGGIGK---PGKKSLLQILNEIRTDKRLAES  291
            PAIVAE LAQ AVH D      LL  EKAA        P   SLL+IL+ +  D RL  +
Sbjct  118  PAIVAEALAQAAVHYDDDPSELLLSAEKAAASYTGAPSPYGTSLLEILDRVLRDPRLDGA  177

Query  292  VKWAD--GNKIRDGVLKRAPEEMIRYAAQVSVSAE--QMEDKLAELLNLVAYFTGAAQRP  347
             +  D   NKIRDGVLKRA +E++ YA    VS +   +E+K  EL        GAAQRP
Sbjct  178  GRNEDPLFNKIRDGVLKRAGDEILEYANAWRVSPDEDPLEEKFEELQWAAVLLYGAAQRP  237

Query  348  PKQVKLDFFLMHCVTSSIFLSKIVT-LPYLDTRTKLRLLEWKGRADLVFYVSRGVPDLLL  406
            PK+ K DFFLMH VTSS+FL  ++  LP++   +K RLL WK R DL  YV+RG P+L L
Sbjct  238  PKKPKYDFFLMHLVTSSLFLRSLLPLLPWIHPSSKARLLRWKWRLDLAVYVARGRPELDL  297

Query  407  EEVTTYEA-----PNDWKTIFYESSVHPRDDGHLSKLVRAL  442
            +E+  Y        NDW+ I         DDGH+ KLVRAL
Sbjct  298  DEIRAYFPKYLSPGNDWEEIV--QKALWHDDGHVVKLVRAL  336



Lambda      K        H        a         alpha
   0.321    0.135    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 628337390


Query= TCONS_00043225

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF42...  319     8e-109


>CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF4243).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and eukaryotes. Proteins 
in this family are typically between 348 and 477 amino 
acids in length.
Length=336

 Score = 319 bits (819),  Expect = 8e-109, Method: Composition-based stats.
 Identities = 115/231 (50%), Positives = 147/231 (64%), Gaps = 10/231 (4%)

Query  115  FHNHIVHHILTIYALGATPDEIRAAYDHNKTYQRPVLPTTQSIVESMHDKTQFQQHLGKE  174
            FHNHI HH+L  YALGA+P++++AAYD N +YQRP  P+  +    +  +  ++ HLG E
Sbjct  1    FHNHIPHHLLAAYALGASPEQLQAAYDANASYQRPAEPSDPAD---LITEENWRDHLGDE  57

Query  175  ENFPNYLAFFQQEIEKKGVAVVLNEYLFSGSECAENMFSRLFGGLLHPLIHIGFGLEFDQ  234
            E +  +L FF+ EI +KG   VL EYLFSG+E AE M +RLFGGLLHPLIH+G+GLEF Q
Sbjct  58   EYYRAFLDFFEDEIARKGWKAVLEEYLFSGNEGAEPMLNRLFGGLLHPLIHLGYGLEFGQ  117

Query  235  PAIVAEGLAQTAVHEDWIGQLYLLPGEKAAGGIGK---PGKKSLLQILNEIRTDKRLAES  291
            PAIVAE LAQ AVH D      LL  EKAA        P   SLL+IL+ +  D RL  +
Sbjct  118  PAIVAEALAQAAVHYDDDPSELLLSAEKAAASYTGAPSPYGTSLLEILDRVLRDPRLDGA  177

Query  292  VKWAD--GNKIRDGVLKRAPEEMIRYAAQVSVSAE--QMEDKLAELLNLVA  338
             +  D   NKIRDGVLKRA +E++ YA    VS +   +E+K  EL     
Sbjct  178  GRNEDPLFNKIRDGVLKRAGDEILEYANAWRVSPDEDPLEEKFEELQWAAV  228



Lambda      K        H        a         alpha
   0.318    0.132    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 404255860


Query= TCONS_00037735

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF42...  444     2e-155


>CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF4243).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and eukaryotes. Proteins 
in this family are typically between 348 and 477 amino 
acids in length.
Length=336

 Score = 444 bits (1145),  Expect = 2e-155, Method: Composition-based stats.
 Identities = 170/350 (49%), Positives = 215/350 (61%), Gaps = 27/350 (8%)

Query  115  FHNHIVHHILTIYALGATPDEIRAAYDHNKTYQRPVLPTTQSIVESMHDKTQFQQHLGKE  174
            FHNHI HH+L  YALGA+P++++AAYD N +YQRP  P+  +    +  +  ++ HLG E
Sbjct  1    FHNHIPHHLLAAYALGASPEQLQAAYDANASYQRPAEPSDPAD---LITEENWRDHLGDE  57

Query  175  ENFPNYLAFFQQEIEKKGVAVVLNEYLFSGSECAENMFSRLFGGLLHPLIHIGFGLEFDQ  234
            E +  +L FF+ EI +KG   VL EYLFSG+E AE M +RLFGGLLHPLIH+G+GLEF Q
Sbjct  58   EYYRAFLDFFEDEIARKGWKAVLEEYLFSGNEGAEPMLNRLFGGLLHPLIHLGYGLEFGQ  117

Query  235  PAIVAEGLAQTAVHEDWIGQLYLLPGEKAAGGIGK---PGKKSLLQILNEIRTDKRLAES  291
            PAIVAE LAQ AVH D      LL  EKAA        P   SLL+IL+ +  D RL  +
Sbjct  118  PAIVAEALAQAAVHYDDDPSELLLSAEKAAASYTGAPSPYGTSLLEILDRVLRDPRLDGA  177

Query  292  VKWAD--GNKIRDGVLKRAPEEMIRYAAQVSVSAE--QMEDKLAELLNLVDRWLLTIHEA  347
             +  D   NKIRDGVLKRA +E++ YA    VS +   +E+K  EL              
Sbjct  178  GRNEDPLFNKIRDGVLKRAGDEILEYANAWRVSPDEDPLEEKFEELQWAA---------V  228

Query  348  YFTGAAQRPPKQVKLDFFLMHCVTSSIFLSKIVT-LPYLDTRTKLRLLEWKGRADLVFYV  406
               GAAQRPPK+ K DFFLMH VTSS+FL  ++  LP++   +K RLL WK R DL  YV
Sbjct  229  LLYGAAQRPPKKPKYDFFLMHLVTSSLFLRSLLPLLPWIHPSSKARLLRWKWRLDLAVYV  288

Query  407  SRGVPDLLLEEVTTYEA-----PNDWKTIFYESSVHPRDDGHLSKLVRAL  451
            +RG P+L L+E+  Y        NDW+ I         DDGH+ KLVRAL
Sbjct  289  ARGRPELDLDEIRAYFPKYLSPGNDWEEIV--QKALWHDDGHVVKLVRAL  336



Lambda      K        H        a         alpha
   0.320    0.135    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 643478050


Query= TCONS_00037736

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF42...  105     1e-28


>CDD:464069 pfam14027, DUF4243, Protein of unknown function (DUF4243).  This 
family of proteins is functionally uncharacterized. This 
family of proteins is found in bacteria and eukaryotes. Proteins 
in this family are typically between 348 and 477 amino 
acids in length.
Length=336

 Score = 105 bits (264),  Expect = 1e-28, Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 8/91 (9%)

Query  1    MHCVTSSIFLSKIVT-LPYLDTRTKLRLLEWKGRADLVFYVSRGVPDLLLEEVTTYEA--  57
            MH VTSS+FL  ++  LP++   +K RLL WK R DL  YV+RG P+L L+E+  Y    
Sbjct  248  MHLVTSSLFLRSLLPLLPWIHPSSKARLLRWKWRLDLAVYVARGRPELDLDEIRAYFPKY  307

Query  58   ---PNDWKTIFYESSVHPRDDGHLSKLVRAL  85
                NDW+ I         DDGH+ KLVRAL
Sbjct  308  LSPGNDWEEIV--QKALWHDDGHVVKLVRAL  336



Lambda      K        H        a         alpha
   0.321    0.136    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124230262


Query= TCONS_00037737

Length=142


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 110232486


Query= TCONS_00037739

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00037740

Length=412
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395229 pfam00293, NUDIX, NUDIX domain                             77.5    8e-18
CDD:462747 pfam09296, NUDIX-like, NADH pyrophosphatase-like rudim...  62.4    7e-13


>CDD:395229 pfam00293, NUDIX, NUDIX domain.  
Length=132

 Score = 77.5 bits (191),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 54/111 (49%), Gaps = 5/111 (5%)

Query  255  IVAVLSADAKRILLG-RSKRFPPNWYSTLAGFIEPAESVEDAVRREVWEEAGVTLSRVVI  313
            +  VL  +  R+LL  RSK+  P W+S   G +EP E+ E+A RRE+ EE G+    + +
Sbjct  6    VGVVLLNEKGRVLLVRRSKKPFPGWWSLPGGKVEPGETPEEAARRELEEETGLEPELLEL  65

Query  314  HSSQPWPYPANLMIGAIAQVS----DPEHEKISLLHDPELEDAKWFEIQEV  360
              S  +  P +       ++          ++    D E+E+ +W  ++E+
Sbjct  66   LGSLHYLAPFDGRFPDEHEILYVFLAEVEGELEPDPDGEVEEVRWVPLEEL  116


>CDD:462747 pfam09296, NUDIX-like, NADH pyrophosphatase-like rudimentary 
NUDIX domain.  The N-terminal domain in NADH pyrophosphatase, 
which has a rudiment Nudix fold according to SCOP.
Length=96

 Score = 62.4 bits (152),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 31/142 (22%), Positives = 48/142 (34%), Gaps = 50/142 (35%)

Query  57   STRFVLLKDLAPLTKSPSELYYAKYDEVRKLVPENFFDKSEEEMIKQFDS---RKTSAQL  113
            S R++L      L K                      +     ++   +         + 
Sbjct  1    SARWLLFWGGRLLLKK---------------------EGDNRLLLPAGELPELVLDLTEP  39

Query  114  IFLGLDETRKQDGLAWKIYTGAPYFALDVTPKGSEEQQANAKDIISTVVAKGLSFYQSRV  173
            +FLGLDE             GAP FA+DV+                  + +G  F   R 
Sbjct  40   VFLGLDE-------------GAPVFAVDVSAAAELA------------LPEGGEFADLRA  74

Query  174  VMT-FSADEAAIYAQARALIDW  194
            +M    A++A + AQARAL+ W
Sbjct  75   LMLALDAEDAGLAAQARALLYW  96



Lambda      K        H        a         alpha
   0.316    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 501729466


Query= TCONS_00037738

Length=412
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395229 pfam00293, NUDIX, NUDIX domain                             77.5    8e-18
CDD:462747 pfam09296, NUDIX-like, NADH pyrophosphatase-like rudim...  62.4    7e-13


>CDD:395229 pfam00293, NUDIX, NUDIX domain.  
Length=132

 Score = 77.5 bits (191),  Expect = 8e-18, Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 54/111 (49%), Gaps = 5/111 (5%)

Query  255  IVAVLSADAKRILLG-RSKRFPPNWYSTLAGFIEPAESVEDAVRREVWEEAGVTLSRVVI  313
            +  VL  +  R+LL  RSK+  P W+S   G +EP E+ E+A RRE+ EE G+    + +
Sbjct  6    VGVVLLNEKGRVLLVRRSKKPFPGWWSLPGGKVEPGETPEEAARRELEEETGLEPELLEL  65

Query  314  HSSQPWPYPANLMIGAIAQVS----DPEHEKISLLHDPELEDAKWFEIQEV  360
              S  +  P +       ++          ++    D E+E+ +W  ++E+
Sbjct  66   LGSLHYLAPFDGRFPDEHEILYVFLAEVEGELEPDPDGEVEEVRWVPLEEL  116


>CDD:462747 pfam09296, NUDIX-like, NADH pyrophosphatase-like rudimentary 
NUDIX domain.  The N-terminal domain in NADH pyrophosphatase, 
which has a rudiment Nudix fold according to SCOP.
Length=96

 Score = 62.4 bits (152),  Expect = 7e-13, Method: Composition-based stats.
 Identities = 31/142 (22%), Positives = 48/142 (34%), Gaps = 50/142 (35%)

Query  57   STRFVLLKDLAPLTKSPSELYYAKYDEVRKLVPENFFDKSEEEMIKQFDS---RKTSAQL  113
            S R++L      L K                      +     ++   +         + 
Sbjct  1    SARWLLFWGGRLLLKK---------------------EGDNRLLLPAGELPELVLDLTEP  39

Query  114  IFLGLDETRKQDGLAWKIYTGAPYFALDVTPKGSEEQQANAKDIISTVVAKGLSFYQSRV  173
            +FLGLDE             GAP FA+DV+                  + +G  F   R 
Sbjct  40   VFLGLDE-------------GAPVFAVDVSAAAELA------------LPEGGEFADLRA  74

Query  174  VMT-FSADEAAIYAQARALIDW  194
            +M    A++A + AQARAL+ W
Sbjct  75   LMLALDAEDAGLAAQARALLYW  96



Lambda      K        H        a         alpha
   0.316    0.132    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 501729466


Query= TCONS_00037741

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00043226

Length=87


***** No hits found *****



Lambda      K        H        a         alpha
   0.313    0.134    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82785096


Query= TCONS_00043227

Length=1134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:397060 pfam02765, POT1, Telomeric single stranded DNA binding...  98.6    1e-24


>CDD:397060 pfam02765, POT1, Telomeric single stranded DNA binding POT1/CDC13. 
 This domain binds single stranded telomeric DNA and adopts 
an OB fold. It includes the proteins POT1 and CDC13 which 
have been shown to regulate telomere length, replication 
and capping. POT1 is one component of the shelterin complex 
that protects telomere-ends from attack by DNA-repair mechanisms.
Length=140

 Score = 98.6 bits (246),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 64/143 (45%), Gaps = 13/143 (9%)

Query  903   FAPLAMLIDHYNSLIDTISVVSDASPISRATTGKKDFTLSLLVTDPS---MAGTIVHVEI  959
             F  L   +     +++ I VV DAS   +  TG  D+  +  + DPS    +   + V  
Sbjct  1     FVDLDKAL-AEGKVVNVIGVVIDASFPKK--TGGSDYCCTFTIVDPSLKGDSNDGLRVVF  57

Query  960   FRPYKSALPSVKE-GDAILLRNFQVKSFNRSMMLVSVD--TSAWAVF---HNASKEAQIA  1013
             FR     LP VK+ GD ILL   +++SFN     ++    +S+WA+F    N      I 
Sbjct  58    FRKNFEDLPIVKKVGDIILLHRVKIQSFNGEPQGLANIGFSSSWALFNGKLNRLYTPPIL  117

Query  1014  GP-PVEHGDEERAYATDLRQWYH  1035
             G    E   EE+ Y   LR+W  
Sbjct  118   GSNFFEFSAEEKKYLESLRKWAE  140



Lambda      K        H        a         alpha
   0.304    0.124    0.337    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1447898806


Query= TCONS_00043229

Length=1234


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1587522606


Query= TCONS_00043228

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like...  163     6e-45
CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide...  72.6    1e-14


>CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This 
family includes FMO proteins, cyclohexanone mono-oxygenase 
and a number of different mono-oxygenases.
Length=531

 Score = 163 bits (414),  Expect = 6e-45, Method: Composition-based stats.
 Identities = 126/454 (28%), Positives = 192/454 (42%), Gaps = 129/454 (28%)

Query  8    RRIAVIGAGPCGLSAVKYLLAE----KCFDKIDVFEQRGSVGGVWNYTPAALKASLVTQV  63
            +++AVIGAG  GL+++K  L E     CF++ D       +GG+W               
Sbjct  2    KKVAVIGAGVSGLASIKCCLEEGLEPTCFERSD------DIGGLW---------------  40

Query  64   PQLNPDGPIEEPIWYRFGE-TEETRQLTFTSPIYSTLDTNIPKELMAYSDKPFPADCQAL  122
                           RF E  EE R     + IY ++ TN  KE+  +SD PFP D    
Sbjct  41   ---------------RFTENVEEGR-----ASIYKSVITNTSKEMSCFSDFPFPEDYPNF  80

Query  123  PRHSTVKKYLEEYAE--DVKDLIQFETQVLDV--RPEGQTNKAWALTTRNLRTGAKETHI  178
              +S   +Y   +A+  D+   IQF+T V  V  RP+  T+  W + T     G +E+ +
Sbjct  81   MHNSKFLEYFRMFAKEFDLLKYIQFKTTVCSVKKRPDFSTSGQWEVVTE--HEGKQESAV  138

Query  179  YDAVVVASGHFDVPYLP--DIKGIEPWNKKYPGVISHSKYFDSPEQFRDKRVIVVGSSAS  236
            +DAV+V +GH   P+LP     GIE    K+ G   HS+ +  PE F  KRV+V+G   S
Sbjct  139  FDAVMVCTGHHTNPHLPLESFPGIE----KFKGQYFHSRDYKHPEGFTGKRVLVIGIGNS  194

Query  237  AIDIGAQIDRVSKGKVLVSQRTESSLM--------PF-----------------------  265
              DI  ++   +  +V +S R  S ++        P+                       
Sbjct  195  GGDIAVELSHTAA-QVFLSTRRGSWVLSRVSDHGYPWDMLFSTRFTSFLRNILPTSISNW  253

Query  266  -----------------IPSDKSYFPEIV--EFLPS--------------ESHRRAVRFA  292
                              P +++   E V  + LP+              E    +  F 
Sbjct  254  LMEKQMNRRFNHENYGLKPKNRALSKEPVVNDDLPNRILCGAVKVKPNVKEFTETSAIFE  313

Query  293  DGRVEMDIDAIVFCTGYLYSFPFLSSLDPPVIGDGRRTLNTYQHLF--YIYNPTLVFPVL  350
            DG VE DID ++F TGY ++FPF   L+  ++      ++ Y+++F   +  PTL    L
Sbjct  314  DGTVEEDIDVVIFATGYTFAFPF---LEESLVKVENNKVSLYKYVFPPNLEKPTLAIIGL  370

Query  351  PQRV-IPFPLSENQAAVYARVWSGRLTLPSIAEM  383
             Q +    P  E QA    RV+ G  TLPS +EM
Sbjct  371  IQPLGSIIPTVELQARWATRVFKGLCTLPSQSEM  404


>CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase. 
 
Length=296

 Score = 72.6 bits (179),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 67/293 (23%), Positives = 98/293 (33%), Gaps = 78/293 (27%)

Query  77   WYRFGETEETRQLT--FTSPIYSTLDTN--IPKELMAYS-DKPFPADCQALPRHSTVKKY  131
            +YR+         +  FTS  +   D N   P    A++ ++  P+  +         +Y
Sbjct  30   FYRY--PTHMTFFSPSFTSNGFGIPDLNAISPGTSPAFTFNREHPSGNEYA-------EY  80

Query  132  LEEYAEDVKDL-IQFETQVLDVRPEG-----QTNKAWALTTRNLRTGAKETHIYDAVVVA  185
            L   A D  +L I    +V  V+ E       T+K      R              V++A
Sbjct  81   LRRVA-DHFELPINLFEEVTSVKKEDDGFVVTTSKG-TYQARY-------------VIIA  125

Query  186  SGHFDVPYLPDIKGIEPWNKKYPGVISHSKYFDSPEQFRDKRVIVVGSSASAIDIGAQID  245
            +G FD P    +    P   K      H  Y      +  ++V+V+G   SA+D  A ++
Sbjct  126  TGEFDFPNKLGV----PELPK------HYSYVKDFHPYAGQKVVVIGGYNSAVD--AALE  173

Query  246  RVSKGK-VLVSQRTESSLMPFIPSDKSYF--PEIVEFLPS--------------------  282
             V KG  V V  R          SD SY   P+ +  L                      
Sbjct  174  LVRKGARVTVLYRGSEWE--DRDSDPSYSLSPDTLNRLEELVKNGKIKAHFNAEVKEITE  231

Query  283  ESHRRAVRFADGRVEMDIDAIVFCTGYLYSFPFLSSLDPPVI---GDGRRTLN  332
                  V   DGR     D  +  TGY    P LS L   +     DGR  L 
Sbjct  232  VDVSYKVHTEDGRKVTSNDDPILATGYH---PDLSFLKKGLFELDEDGRPVLT  281



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00037742

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like...  133     3e-35
CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide...  72.6    6e-15


>CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This 
family includes FMO proteins, cyclohexanone mono-oxygenase 
and a number of different mono-oxygenases.
Length=531

 Score = 133 bits (337),  Expect = 3e-35, Method: Composition-based stats.
 Identities = 97/349 (28%), Positives = 149/349 (43%), Gaps = 83/349 (24%)

Query  1    MAYSDKPFPADCQALPRHSTVKKYLEEYAE--DVKDLIQFETQVLDV--RPEGQTNKAWA  56
              +SD PFP D      +S   +Y   +A+  D+   IQF+T V  V  RP+  T+  W 
Sbjct  66   SCFSDFPFPEDYPNFMHNSKFLEYFRMFAKEFDLLKYIQFKTTVCSVKKRPDFSTSGQWE  125

Query  57   LTTRNLRTGAKETHIYDAVVVASGHFDVPYLP--DIKGIEPWNKKYPGVISHSKYFDSPE  114
            + T     G +E+ ++DAV+V +GH   P+LP     GIE    K+ G   HS+ +  PE
Sbjct  126  VVTE--HEGKQESAVFDAVMVCTGHHTNPHLPLESFPGIE----KFKGQYFHSRDYKHPE  179

Query  115  QFRDKRVIVVGSSASAIDIGAQIDRVSKGKVLVSQRTESSLM--------PF--------  158
             F  KRV+V+G   S  DI  ++   +  +V +S R  S ++        P+        
Sbjct  180  GFTGKRVLVIGIGNSGGDIAVELSHTAA-QVFLSTRRGSWVLSRVSDHGYPWDMLFSTRF  238

Query  159  --------------------------------IPSDKSYFPEIV--EFLPS---------  175
                                             P +++   E V  + LP+         
Sbjct  239  TSFLRNILPTSISNWLMEKQMNRRFNHENYGLKPKNRALSKEPVVNDDLPNRILCGAVKV  298

Query  176  -----ESHRRAVRFADGRVEMDIDAIVFCTGYLYSFPFLSSLDPPVIGDGRRTLNTYQHL  230
                 E    +  F DG VE DID ++F TGY ++FPF   L+  ++      ++ Y+++
Sbjct  299  KPNVKEFTETSAIFEDGTVEEDIDVVIFATGYTFAFPF---LEESLVKVENNKVSLYKYV  355

Query  231  F--YIYNPTLVFPVLPQRV-IPFPLSENQAAVYARVWSGRLTLPSIAEM  276
            F   +  PTL    L Q +    P  E QA    RV+ G  TLPS +EM
Sbjct  356  FPPNLEKPTLAIIGLIQPLGSIIPTVELQARWATRVFKGLCTLPSQSEM  404


>CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase. 
 
Length=296

 Score = 72.6 bits (179),  Expect = 6e-15, Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 77/234 (33%), Gaps = 64/234 (27%)

Query  24   YLEEYAEDVKDL-IQFETQVLDVRPEG-----QTNKAWALTTRNLRTGAKETHIYDAVVV  77
            YL   A D  +L I    +V  V+ E       T+K      R              V++
Sbjct  80   YLRRVA-DHFELPINLFEEVTSVKKEDDGFVVTTSKG-TYQARY-------------VII  124

Query  78   ASGHFDVPYLPDIKGIEPWNKKYPGVISHSKYFDSPEQFRDKRVIVVGSSASAIDIGAQI  137
            A+G FD P    +    P   K      H  Y      +  ++V+V+G   SA+D  A +
Sbjct  125  ATGEFDFPNKLGV----PELPK------HYSYVKDFHPYAGQKVVVIGGYNSAVD--AAL  172

Query  138  DRVSKGK-VLVSQRTESSLMPFIPSDKSYF--PEIVEFLPS-------------------  175
            + V KG  V V  R          SD SY   P+ +  L                     
Sbjct  173  ELVRKGARVTVLYRGSEWE--DRDSDPSYSLSPDTLNRLEELVKNGKIKAHFNAEVKEIT  230

Query  176  -ESHRRAVRFADGRVEMDIDAIVFCTGYLYSFPFLSSLDPPVI---GDGRRTLN  225
                   V   DGR     D  +  TGY    P LS L   +     DGR  L 
Sbjct  231  EVDVSYKVHTEDGRKVTSNDDPILATGYH---PDLSFLKKGLFELDEDGRPVLT  281



Lambda      K        H        a         alpha
   0.320    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452022522


Query= TCONS_00043230

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like...  163     6e-45
CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide...  72.6    1e-14


>CDD:395602 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This 
family includes FMO proteins, cyclohexanone mono-oxygenase 
and a number of different mono-oxygenases.
Length=531

 Score = 163 bits (414),  Expect = 6e-45, Method: Composition-based stats.
 Identities = 126/454 (28%), Positives = 192/454 (42%), Gaps = 129/454 (28%)

Query  8    RRIAVIGAGPCGLSAVKYLLAE----KCFDKIDVFEQRGSVGGVWNYTPAALKASLVTQV  63
            +++AVIGAG  GL+++K  L E     CF++ D       +GG+W               
Sbjct  2    KKVAVIGAGVSGLASIKCCLEEGLEPTCFERSD------DIGGLW---------------  40

Query  64   PQLNPDGPIEEPIWYRFGE-TEETRQLTFTSPIYSTLDTNIPKELMAYSDKPFPADCQAL  122
                           RF E  EE R     + IY ++ TN  KE+  +SD PFP D    
Sbjct  41   ---------------RFTENVEEGR-----ASIYKSVITNTSKEMSCFSDFPFPEDYPNF  80

Query  123  PRHSTVKKYLEEYAE--DVKDLIQFETQVLDV--RPEGQTNKAWALTTRNLRTGAKETHI  178
              +S   +Y   +A+  D+   IQF+T V  V  RP+  T+  W + T     G +E+ +
Sbjct  81   MHNSKFLEYFRMFAKEFDLLKYIQFKTTVCSVKKRPDFSTSGQWEVVTE--HEGKQESAV  138

Query  179  YDAVVVASGHFDVPYLP--DIKGIEPWNKKYPGVISHSKYFDSPEQFRDKRVIVVGSSAS  236
            +DAV+V +GH   P+LP     GIE    K+ G   HS+ +  PE F  KRV+V+G   S
Sbjct  139  FDAVMVCTGHHTNPHLPLESFPGIE----KFKGQYFHSRDYKHPEGFTGKRVLVIGIGNS  194

Query  237  AIDIGAQIDRVSKGKVLVSQRTESSLM--------PF-----------------------  265
              DI  ++   +  +V +S R  S ++        P+                       
Sbjct  195  GGDIAVELSHTAA-QVFLSTRRGSWVLSRVSDHGYPWDMLFSTRFTSFLRNILPTSISNW  253

Query  266  -----------------IPSDKSYFPEIV--EFLPS--------------ESHRRAVRFA  292
                              P +++   E V  + LP+              E    +  F 
Sbjct  254  LMEKQMNRRFNHENYGLKPKNRALSKEPVVNDDLPNRILCGAVKVKPNVKEFTETSAIFE  313

Query  293  DGRVEMDIDAIVFCTGYLYSFPFLSSLDPPVIGDGRRTLNTYQHLF--YIYNPTLVFPVL  350
            DG VE DID ++F TGY ++FPF   L+  ++      ++ Y+++F   +  PTL    L
Sbjct  314  DGTVEEDIDVVIFATGYTFAFPF---LEESLVKVENNKVSLYKYVFPPNLEKPTLAIIGL  370

Query  351  PQRV-IPFPLSENQAAVYARVWSGRLTLPSIAEM  383
             Q +    P  E QA    RV+ G  TLPS +EM
Sbjct  371  IQPLGSIIPTVELQARWATRVFKGLCTLPSQSEM  404


>CDD:404603 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase. 
 
Length=296

 Score = 72.6 bits (179),  Expect = 1e-14, Method: Composition-based stats.
 Identities = 67/293 (23%), Positives = 98/293 (33%), Gaps = 78/293 (27%)

Query  77   WYRFGETEETRQLT--FTSPIYSTLDTN--IPKELMAYS-DKPFPADCQALPRHSTVKKY  131
            +YR+         +  FTS  +   D N   P    A++ ++  P+  +         +Y
Sbjct  30   FYRY--PTHMTFFSPSFTSNGFGIPDLNAISPGTSPAFTFNREHPSGNEYA-------EY  80

Query  132  LEEYAEDVKDL-IQFETQVLDVRPEG-----QTNKAWALTTRNLRTGAKETHIYDAVVVA  185
            L   A D  +L I    +V  V+ E       T+K      R              V++A
Sbjct  81   LRRVA-DHFELPINLFEEVTSVKKEDDGFVVTTSKG-TYQARY-------------VIIA  125

Query  186  SGHFDVPYLPDIKGIEPWNKKYPGVISHSKYFDSPEQFRDKRVIVVGSSASAIDIGAQID  245
            +G FD P    +    P   K      H  Y      +  ++V+V+G   SA+D  A ++
Sbjct  126  TGEFDFPNKLGV----PELPK------HYSYVKDFHPYAGQKVVVIGGYNSAVD--AALE  173

Query  246  RVSKGK-VLVSQRTESSLMPFIPSDKSYF--PEIVEFLPS--------------------  282
             V KG  V V  R          SD SY   P+ +  L                      
Sbjct  174  LVRKGARVTVLYRGSEWE--DRDSDPSYSLSPDTLNRLEELVKNGKIKAHFNAEVKEITE  231

Query  283  ESHRRAVRFADGRVEMDIDAIVFCTGYLYSFPFLSSLDPPVI---GDGRRTLN  332
                  V   DGR     D  +  TGY    P LS L   +     DGR  L 
Sbjct  232  VDVSYKVHTEDGRKVTSNDDPILATGYH---PDLSFLKKGLFELDEDGRPVLT  281



Lambda      K        H        a         alpha
   0.320    0.136    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 599570136


Query= TCONS_00043232

Length=1234


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1587522606


Query= TCONS_00043231

Length=1234


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1587522606


Query= TCONS_00037744

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402894 pfam11496, HDA2-3, Class II histone deacetylase comple...  323     2e-109


>CDD:402894 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 
2 and 3.  This family of class II histone deacetylase complex 
subunits HDA2 and HDA3 is found in fungi, The member from 
S. pombe is referred to as Ccq1 (coiled-coil quantitatively-enriched 
protein 1). These proteins associate with HDA1 
to generate the activity of the HDA1 histone deacetylase complex. 
HDA1 interacts with itself and with the HDA2-HDA3 subcomplex 
to form a probable tetramer and these interactions are 
necessary for catalytic activity. The HDA1 histone deacetylase 
complex is responsible for the deacetylation of lysine 
residues on the N-terminal part of the core histones (H2A, H2B, 
H3 and H4). Histone deacetylation gives a tag for epigenetic 
repression and plays an important role in transcriptional 
regulation, cell cycle progression and developmental events. 
HDA2 and HDA3 have a conserved coiled-coil domain towards 
their C-terminus.
Length=281

 Score = 323 bits (831),  Expect = 2e-109, Method: Composition-based stats.
 Identities = 110/289 (38%), Positives = 150/289 (52%), Gaps = 22/289 (8%)

Query  140  LGPSEFAVPLPMDSRVKDDYERILKDEAQSIDEFLKTFALQAETSRIEQERLIPRMNSLL  199
             G  ++ +P PM S  K+  E+I+      I ++ +T   + + S I+       M   L
Sbjct  1    NGSGDYYLPTPMTSYQKELTEQIVSLHYSDILKYCETSDSKEDISLIK------SMTLCL  54

Query  200  ERLSNTSTHPDLNITEHIKDSDSDLAKEAAWAEYSSAKFLLLGYLINNASSHD----LHL  255
            E LS  +THP L + +H       L  E     Y+S KFL+L  L+N     D    +++
Sbjct  55   ENLSLVATHPYL-LVDHYMPKSLLLKDEPEKLAYTSGKFLVLNDLVNLLIERDRKEPINV  113

Query  256  VIMVHGAKTLKILERFLMGKGLSYTRPRHEMGIGTNLEVS---------MVKESLSFGIQ  306
             I+    KTL ++E  L+GKGLSY R   EM  G N +VS              LS   Q
Sbjct  114  AIVARSGKTLDLVEALLLGKGLSYKRYSGEMLYGENKKVSDSGNKKIHSTTCHLLSSTGQ  173

Query  307  STIDDGIMETYKPPAAIVALDSSFNATSPSVEHMRTTYARHGNLLPVIRLLVSNSSEHVQ  366
             T DD ++E YK    I+A DSS + +SPSVEH+RT   R GNL P+IRL+V NS EHV+
Sbjct  174  LTNDDSLLENYKF-DLIIAFDSSVDTSSPSVEHLRTQNRRKGNLAPIIRLVVINSIEHVE  232

Query  367  LCFANYPE-PHRLRLVVQYTSRLRDVVGDLQDDALGVYEDSEEILSSLL  414
            LCF   P+ P  L  V+     LRDVVGDL DD L +YE   + L+  L
Sbjct  233  LCFPKPPDSPDYLYKVIAAIVVLRDVVGDLPDDLLPIYEQKLKYLNHWL  281



Lambda      K        H        a         alpha
   0.313    0.130    0.367    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 587408632


Query= TCONS_00037745

Length=893
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402894 pfam11496, HDA2-3, Class II histone deacetylase comple...  331     8e-108


>CDD:402894 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 
2 and 3.  This family of class II histone deacetylase complex 
subunits HDA2 and HDA3 is found in fungi, The member from 
S. pombe is referred to as Ccq1 (coiled-coil quantitatively-enriched 
protein 1). These proteins associate with HDA1 
to generate the activity of the HDA1 histone deacetylase complex. 
HDA1 interacts with itself and with the HDA2-HDA3 subcomplex 
to form a probable tetramer and these interactions are 
necessary for catalytic activity. The HDA1 histone deacetylase 
complex is responsible for the deacetylation of lysine 
residues on the N-terminal part of the core histones (H2A, H2B, 
H3 and H4). Histone deacetylation gives a tag for epigenetic 
repression and plays an important role in transcriptional 
regulation, cell cycle progression and developmental events. 
HDA2 and HDA3 have a conserved coiled-coil domain towards 
their C-terminus.
Length=281

 Score = 331 bits (852),  Expect = 8e-108, Method: Composition-based stats.
 Identities = 110/289 (38%), Positives = 150/289 (52%), Gaps = 22/289 (8%)

Query  519  LGPSEFAVPLPMDSRVKDDYERILKDEAQSIDEFLKTFALQAETSRIEQERLIPRMNSLL  578
             G  ++ +P PM S  K+  E+I+      I ++ +T   + + S I+       M   L
Sbjct  1    NGSGDYYLPTPMTSYQKELTEQIVSLHYSDILKYCETSDSKEDISLIK------SMTLCL  54

Query  579  ERLSNTSTHPDLNITEHIKDSDSDLAKEAAWAEYSSAKFLLLGYLINNASSHD----LHL  634
            E LS  +THP L + +H       L  E     Y+S KFL+L  L+N     D    +++
Sbjct  55   ENLSLVATHPYL-LVDHYMPKSLLLKDEPEKLAYTSGKFLVLNDLVNLLIERDRKEPINV  113

Query  635  VIMVHGAKTLKILERFLMGKGLSYTRPRHEMGIGTNLEVS---------MVKESLSFGIQ  685
             I+    KTL ++E  L+GKGLSY R   EM  G N +VS              LS   Q
Sbjct  114  AIVARSGKTLDLVEALLLGKGLSYKRYSGEMLYGENKKVSDSGNKKIHSTTCHLLSSTGQ  173

Query  686  STIDDGIMETYKPPAAIVALDSSFNATSPSVEHMRTTYARHGNLLPVIRLLVSNSSEHVQ  745
             T DD ++E YK    I+A DSS + +SPSVEH+RT   R GNL P+IRL+V NS EHV+
Sbjct  174  LTNDDSLLENYKF-DLIIAFDSSVDTSSPSVEHLRTQNRRKGNLAPIIRLVVINSIEHVE  232

Query  746  LCFANYPE-PHRLRLVVQYTSRLRDVVGDLQDDALGVYEDSEEILSSLL  793
            LCF   P+ P  L  V+     LRDVVGDL DD L +YE   + L+  L
Sbjct  233  LCFPKPPDSPDYLYKVIAAIVVLRDVVGDLPDDLLPIYEQKLKYLNHWL  281



Lambda      K        H        a         alpha
   0.310    0.126    0.360    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0846    0.140     1.90     42.6     43.6 

Effective search space used: 1145540172


Query= TCONS_00037746

Length=813
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462475 pfam08429, PLU-1, PLU-1-like protein. Sequences in thi...  436     3e-148
CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase. The JmjC do...  173     2e-51 
CDD:460750 pfam02928, zf-C5HC2, C5HC2 zinc finger. Predicted zinc...  64.2    1e-13 


>CDD:462475 pfam08429, PLU-1, PLU-1-like protein.  Sequences in this family 
bear similarity to the central region of PLU-1. This is a 
nuclear protein that may have a role in DNA-binding and transcription, 
and is closely associated with the malignant phenotype 
of breast cancer. This region is found in various other 
Jumonji/ARID domain-containing proteins (see pfam02373, pfam01388).
Length=336

 Score = 436 bits (1124),  Expect = 3e-148, Method: Composition-based stats.
 Identities = 170/349 (49%), Positives = 231/349 (66%), Gaps = 17/349 (5%)

Query  389  AWGEKLDKVLENEPKPQLKVLHSLLSEGEKIPYHLHGL-QDLAAFVQRCDKWVEEANNYI  447
             W EK+++ LE EPKP LK L +LL+E EKI + L  L QDL AFVQR +KWVEEA   +
Sbjct  1    TWAEKVEEALEEEPKPSLKELRALLNEAEKIKFPLPELLQDLRAFVQRANKWVEEAQQLL  60

Query  448  TRKQQNRRKNEKAWRKSTSKAAQLEERDREVRRIENMYALLAEADKLSFDCPQMAALEEK  507
            +RKQQ RRKNE          A+ +ER+RE R +E +  LL EAD L FDCP++  L+E 
Sbjct  61   SRKQQTRRKNE----------AEEDEREREKRTVEELRKLLEEADNLPFDCPEIEQLKEL  110

Query  508  TREIEKFRQDVNVALMN-PHIRSIQEVEELVESARNFNVEIPEVEGLEHILRQMRWNDEA  566
              EIE+F++    AL   P   SI+E+EEL+E  ++FNV++PE+E LE +L Q++W +E 
Sbjct  111  LEEIEEFQKRAREALSEEPPSLSIEELEELLEEGKSFNVDLPELEELEKVLEQLKWLEEV  170

Query  567  RR-KRDQYMTLKECQELVQAGEQLGL-SETNEHLSHFKELCRHGETWEAKAKELMSVESV  624
            R   R + +TL++ +EL++ G +LG+     + ++  +EL   GE WE KAKEL+S E V
Sbjct  171  RETSRKKSLTLEDVRELIEEGVELGIPPPYEDLMAELQELLTAGERWEEKAKELLSRERV  230

Query  625  HYQQLEALSAQALRFPVSPETLSAVDAILTKQREAQKKIQNLYERSKDPDFRKRPKYKEV  684
               QLEALS +A   PVS   L+A+D IL K RE Q++I+ LY+RS   DF KRP   E+
Sbjct  231  SLAQLEALSKEAQEIPVSLPNLAALDEILKKAREWQRQIEALYQRS---DFGKRPTLDEL  287

Query  685  RELMDSLEALNSRPTGAIDLEREQKRHEDWMRKGKKLFGKANAPLHILK  733
             EL+   E+L  +P G  DLE+E KR EDWMR+GKKLF K NAPLH+L+
Sbjct  288  EELLAKGESLPVKPEGLSDLEKEVKRAEDWMRRGKKLFLKKNAPLHLLE  336


>CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase.  The JmjC domain belongs 
to the Cupin superfamily. JmjC-domain proteins may be 
protein hydroxylases that catalyze a novel histone modification. 
This is confirmed to be a hydroxylase: the human JmjC 
protein named Tyw5p unexpectedly acts in the biosynthesis of 
a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe 
by catalyzing hydroxylation.
Length=114

 Score = 173 bits (440),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 59/117 (50%), Positives = 70/117 (60%), Gaps = 3/117 (3%)

Query  93   WVYVGMCFSTFCWHNEDHYAYSANYQHFGATKTWYGIPGSDAEAFEEAMRQAVPELFESQ  152
            W+Y+GM FST  WH ED   YS NY HFGA K WY IP   AE FE+ +          Q
Sbjct  1    WLYLGMPFSTTPWHIEDQGLYSINYLHFGAPKVWYIIPPEYAEKFEKVLS---DHFGGEQ  57

Query  153  PDLLFQLVTLMPPDQLKKAGVNVYALDQRAGQFVITFPKAYHAGFNHGFNFNEAVNF  209
            PD L  L T++ P QL++ G+ VY   Q+ G+FV TFP  YH  FN GFN  EAVNF
Sbjct  58   PDDLLHLNTIISPKQLRENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF  114


>CDD:460750 pfam02928, zf-C5HC2, C5HC2 zinc finger.  Predicted zinc finger 
with eight potential zinc ligand binding residues. This domain 
is found in Jumonji. This domain may have a DNA binding 
function.
Length=54

 Score = 64.2 bits (157),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 8/60 (13%)

Query  317  CQYCKAYTYLTQFRCHK-SGKTVCLLHTETFDCCGDSSSQRLLGPDHTLRYRMSDDTLKA  375
            C +CKAY YL+   C K SGK VCL H +  + C D           TL YR +DD L+A
Sbjct  1    CSFCKAYCYLSAVTCSKCSGKVVCLRHAK--ELCSDCP-----PSKRTLLYRYTDDELEA  53



Lambda      K        H        a         alpha
   0.318    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1046254288


Query= TCONS_00037747

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402894 pfam11496, HDA2-3, Class II histone deacetylase comple...  61.6    5e-11


>CDD:402894 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 
2 and 3.  This family of class II histone deacetylase complex 
subunits HDA2 and HDA3 is found in fungi, The member from 
S. pombe is referred to as Ccq1 (coiled-coil quantitatively-enriched 
protein 1). These proteins associate with HDA1 
to generate the activity of the HDA1 histone deacetylase complex. 
HDA1 interacts with itself and with the HDA2-HDA3 subcomplex 
to form a probable tetramer and these interactions are 
necessary for catalytic activity. The HDA1 histone deacetylase 
complex is responsible for the deacetylation of lysine 
residues on the N-terminal part of the core histones (H2A, H2B, 
H3 and H4). Histone deacetylation gives a tag for epigenetic 
repression and plays an important role in transcriptional 
regulation, cell cycle progression and developmental events. 
HDA2 and HDA3 have a conserved coiled-coil domain towards 
their C-terminus.
Length=281

 Score = 61.6 bits (150),  Expect = 5e-11, Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (4%)

Query  519  LGPSEFAVPLPMDSRVKDDYERILKDEAQSIDEFLKTFALQAETSRIEVSSMH  571
             G  ++ +P PM S  K+  E+I+      I ++ +T   + + S I   SM 
Sbjct  1    NGSGDYYLPTPMTSYQKELTEQIVSLHYSDILKYCETSDSKEDISLI--KSMT  51



Lambda      K        H        a         alpha
   0.307    0.124    0.357    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 717325440


Query= TCONS_00043233

Length=813
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462475 pfam08429, PLU-1, PLU-1-like protein. Sequences in thi...  436     3e-148
CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase. The JmjC do...  173     2e-51 
CDD:460750 pfam02928, zf-C5HC2, C5HC2 zinc finger. Predicted zinc...  64.2    1e-13 


>CDD:462475 pfam08429, PLU-1, PLU-1-like protein.  Sequences in this family 
bear similarity to the central region of PLU-1. This is a 
nuclear protein that may have a role in DNA-binding and transcription, 
and is closely associated with the malignant phenotype 
of breast cancer. This region is found in various other 
Jumonji/ARID domain-containing proteins (see pfam02373, pfam01388).
Length=336

 Score = 436 bits (1124),  Expect = 3e-148, Method: Composition-based stats.
 Identities = 170/349 (49%), Positives = 231/349 (66%), Gaps = 17/349 (5%)

Query  389  AWGEKLDKVLENEPKPQLKVLHSLLSEGEKIPYHLHGL-QDLAAFVQRCDKWVEEANNYI  447
             W EK+++ LE EPKP LK L +LL+E EKI + L  L QDL AFVQR +KWVEEA   +
Sbjct  1    TWAEKVEEALEEEPKPSLKELRALLNEAEKIKFPLPELLQDLRAFVQRANKWVEEAQQLL  60

Query  448  TRKQQNRRKNEKAWRKSTSKAAQLEERDREVRRIENMYALLAEADKLSFDCPQMAALEEK  507
            +RKQQ RRKNE          A+ +ER+RE R +E +  LL EAD L FDCP++  L+E 
Sbjct  61   SRKQQTRRKNE----------AEEDEREREKRTVEELRKLLEEADNLPFDCPEIEQLKEL  110

Query  508  TREIEKFRQDVNVALMN-PHIRSIQEVEELVESARNFNVEIPEVEGLEHILRQMRWNDEA  566
              EIE+F++    AL   P   SI+E+EEL+E  ++FNV++PE+E LE +L Q++W +E 
Sbjct  111  LEEIEEFQKRAREALSEEPPSLSIEELEELLEEGKSFNVDLPELEELEKVLEQLKWLEEV  170

Query  567  RR-KRDQYMTLKECQELVQAGEQLGL-SETNEHLSHFKELCRHGETWEAKAKELMSVESV  624
            R   R + +TL++ +EL++ G +LG+     + ++  +EL   GE WE KAKEL+S E V
Sbjct  171  RETSRKKSLTLEDVRELIEEGVELGIPPPYEDLMAELQELLTAGERWEEKAKELLSRERV  230

Query  625  HYQQLEALSAQALRFPVSPETLSAVDAILTKQREAQKKIQNLYERSKDPDFRKRPKYKEV  684
               QLEALS +A   PVS   L+A+D IL K RE Q++I+ LY+RS   DF KRP   E+
Sbjct  231  SLAQLEALSKEAQEIPVSLPNLAALDEILKKAREWQRQIEALYQRS---DFGKRPTLDEL  287

Query  685  RELMDSLEALNSRPTGAIDLEREQKRHEDWMRKGKKLFGKANAPLHILK  733
             EL+   E+L  +P G  DLE+E KR EDWMR+GKKLF K NAPLH+L+
Sbjct  288  EELLAKGESLPVKPEGLSDLEKEVKRAEDWMRRGKKLFLKKNAPLHLLE  336


>CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase.  The JmjC domain belongs 
to the Cupin superfamily. JmjC-domain proteins may be 
protein hydroxylases that catalyze a novel histone modification. 
This is confirmed to be a hydroxylase: the human JmjC 
protein named Tyw5p unexpectedly acts in the biosynthesis of 
a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe 
by catalyzing hydroxylation.
Length=114

 Score = 173 bits (440),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 59/117 (50%), Positives = 70/117 (60%), Gaps = 3/117 (3%)

Query  93   WVYVGMCFSTFCWHNEDHYAYSANYQHFGATKTWYGIPGSDAEAFEEAMRQAVPELFESQ  152
            W+Y+GM FST  WH ED   YS NY HFGA K WY IP   AE FE+ +          Q
Sbjct  1    WLYLGMPFSTTPWHIEDQGLYSINYLHFGAPKVWYIIPPEYAEKFEKVLS---DHFGGEQ  57

Query  153  PDLLFQLVTLMPPDQLKKAGVNVYALDQRAGQFVITFPKAYHAGFNHGFNFNEAVNF  209
            PD L  L T++ P QL++ G+ VY   Q+ G+FV TFP  YH  FN GFN  EAVNF
Sbjct  58   PDDLLHLNTIISPKQLRENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF  114


>CDD:460750 pfam02928, zf-C5HC2, C5HC2 zinc finger.  Predicted zinc finger 
with eight potential zinc ligand binding residues. This domain 
is found in Jumonji. This domain may have a DNA binding 
function.
Length=54

 Score = 64.2 bits (157),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 8/60 (13%)

Query  317  CQYCKAYTYLTQFRCHK-SGKTVCLLHTETFDCCGDSSSQRLLGPDHTLRYRMSDDTLKA  375
            C +CKAY YL+   C K SGK VCL H +  + C D           TL YR +DD L+A
Sbjct  1    CSFCKAYCYLSAVTCSKCSGKVVCLRHAK--ELCSDCP-----PSKRTLLYRYTDDELEA  53



Lambda      K        H        a         alpha
   0.318    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1046254288


Query= TCONS_00043234

Length=813
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462475 pfam08429, PLU-1, PLU-1-like protein. Sequences in thi...  436     3e-148
CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase. The JmjC do...  173     2e-51 
CDD:460750 pfam02928, zf-C5HC2, C5HC2 zinc finger. Predicted zinc...  64.2    1e-13 


>CDD:462475 pfam08429, PLU-1, PLU-1-like protein.  Sequences in this family 
bear similarity to the central region of PLU-1. This is a 
nuclear protein that may have a role in DNA-binding and transcription, 
and is closely associated with the malignant phenotype 
of breast cancer. This region is found in various other 
Jumonji/ARID domain-containing proteins (see pfam02373, pfam01388).
Length=336

 Score = 436 bits (1124),  Expect = 3e-148, Method: Composition-based stats.
 Identities = 170/349 (49%), Positives = 231/349 (66%), Gaps = 17/349 (5%)

Query  389  AWGEKLDKVLENEPKPQLKVLHSLLSEGEKIPYHLHGL-QDLAAFVQRCDKWVEEANNYI  447
             W EK+++ LE EPKP LK L +LL+E EKI + L  L QDL AFVQR +KWVEEA   +
Sbjct  1    TWAEKVEEALEEEPKPSLKELRALLNEAEKIKFPLPELLQDLRAFVQRANKWVEEAQQLL  60

Query  448  TRKQQNRRKNEKAWRKSTSKAAQLEERDREVRRIENMYALLAEADKLSFDCPQMAALEEK  507
            +RKQQ RRKNE          A+ +ER+RE R +E +  LL EAD L FDCP++  L+E 
Sbjct  61   SRKQQTRRKNE----------AEEDEREREKRTVEELRKLLEEADNLPFDCPEIEQLKEL  110

Query  508  TREIEKFRQDVNVALMN-PHIRSIQEVEELVESARNFNVEIPEVEGLEHILRQMRWNDEA  566
              EIE+F++    AL   P   SI+E+EEL+E  ++FNV++PE+E LE +L Q++W +E 
Sbjct  111  LEEIEEFQKRAREALSEEPPSLSIEELEELLEEGKSFNVDLPELEELEKVLEQLKWLEEV  170

Query  567  RR-KRDQYMTLKECQELVQAGEQLGL-SETNEHLSHFKELCRHGETWEAKAKELMSVESV  624
            R   R + +TL++ +EL++ G +LG+     + ++  +EL   GE WE KAKEL+S E V
Sbjct  171  RETSRKKSLTLEDVRELIEEGVELGIPPPYEDLMAELQELLTAGERWEEKAKELLSRERV  230

Query  625  HYQQLEALSAQALRFPVSPETLSAVDAILTKQREAQKKIQNLYERSKDPDFRKRPKYKEV  684
               QLEALS +A   PVS   L+A+D IL K RE Q++I+ LY+RS   DF KRP   E+
Sbjct  231  SLAQLEALSKEAQEIPVSLPNLAALDEILKKAREWQRQIEALYQRS---DFGKRPTLDEL  287

Query  685  RELMDSLEALNSRPTGAIDLEREQKRHEDWMRKGKKLFGKANAPLHILK  733
             EL+   E+L  +P G  DLE+E KR EDWMR+GKKLF K NAPLH+L+
Sbjct  288  EELLAKGESLPVKPEGLSDLEKEVKRAEDWMRRGKKLFLKKNAPLHLLE  336


>CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase.  The JmjC domain belongs 
to the Cupin superfamily. JmjC-domain proteins may be 
protein hydroxylases that catalyze a novel histone modification. 
This is confirmed to be a hydroxylase: the human JmjC 
protein named Tyw5p unexpectedly acts in the biosynthesis of 
a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe 
by catalyzing hydroxylation.
Length=114

 Score = 173 bits (440),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 59/117 (50%), Positives = 70/117 (60%), Gaps = 3/117 (3%)

Query  93   WVYVGMCFSTFCWHNEDHYAYSANYQHFGATKTWYGIPGSDAEAFEEAMRQAVPELFESQ  152
            W+Y+GM FST  WH ED   YS NY HFGA K WY IP   AE FE+ +          Q
Sbjct  1    WLYLGMPFSTTPWHIEDQGLYSINYLHFGAPKVWYIIPPEYAEKFEKVLS---DHFGGEQ  57

Query  153  PDLLFQLVTLMPPDQLKKAGVNVYALDQRAGQFVITFPKAYHAGFNHGFNFNEAVNF  209
            PD L  L T++ P QL++ G+ VY   Q+ G+FV TFP  YH  FN GFN  EAVNF
Sbjct  58   PDDLLHLNTIISPKQLRENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF  114


>CDD:460750 pfam02928, zf-C5HC2, C5HC2 zinc finger.  Predicted zinc finger 
with eight potential zinc ligand binding residues. This domain 
is found in Jumonji. This domain may have a DNA binding 
function.
Length=54

 Score = 64.2 bits (157),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 8/60 (13%)

Query  317  CQYCKAYTYLTQFRCHK-SGKTVCLLHTETFDCCGDSSSQRLLGPDHTLRYRMSDDTLKA  375
            C +CKAY YL+   C K SGK VCL H +  + C D           TL YR +DD L+A
Sbjct  1    CSFCKAYCYLSAVTCSKCSGKVVCLRHAK--ELCSDCP-----PSKRTLLYRYTDDELEA  53



Lambda      K        H        a         alpha
   0.318    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1046254288


Query= TCONS_00037748

Length=813
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462475 pfam08429, PLU-1, PLU-1-like protein. Sequences in thi...  436     3e-148
CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase. The JmjC do...  173     2e-51 
CDD:460750 pfam02928, zf-C5HC2, C5HC2 zinc finger. Predicted zinc...  64.2    1e-13 


>CDD:462475 pfam08429, PLU-1, PLU-1-like protein.  Sequences in this family 
bear similarity to the central region of PLU-1. This is a 
nuclear protein that may have a role in DNA-binding and transcription, 
and is closely associated with the malignant phenotype 
of breast cancer. This region is found in various other 
Jumonji/ARID domain-containing proteins (see pfam02373, pfam01388).
Length=336

 Score = 436 bits (1124),  Expect = 3e-148, Method: Composition-based stats.
 Identities = 170/349 (49%), Positives = 231/349 (66%), Gaps = 17/349 (5%)

Query  389  AWGEKLDKVLENEPKPQLKVLHSLLSEGEKIPYHLHGL-QDLAAFVQRCDKWVEEANNYI  447
             W EK+++ LE EPKP LK L +LL+E EKI + L  L QDL AFVQR +KWVEEA   +
Sbjct  1    TWAEKVEEALEEEPKPSLKELRALLNEAEKIKFPLPELLQDLRAFVQRANKWVEEAQQLL  60

Query  448  TRKQQNRRKNEKAWRKSTSKAAQLEERDREVRRIENMYALLAEADKLSFDCPQMAALEEK  507
            +RKQQ RRKNE          A+ +ER+RE R +E +  LL EAD L FDCP++  L+E 
Sbjct  61   SRKQQTRRKNE----------AEEDEREREKRTVEELRKLLEEADNLPFDCPEIEQLKEL  110

Query  508  TREIEKFRQDVNVALMN-PHIRSIQEVEELVESARNFNVEIPEVEGLEHILRQMRWNDEA  566
              EIE+F++    AL   P   SI+E+EEL+E  ++FNV++PE+E LE +L Q++W +E 
Sbjct  111  LEEIEEFQKRAREALSEEPPSLSIEELEELLEEGKSFNVDLPELEELEKVLEQLKWLEEV  170

Query  567  RR-KRDQYMTLKECQELVQAGEQLGL-SETNEHLSHFKELCRHGETWEAKAKELMSVESV  624
            R   R + +TL++ +EL++ G +LG+     + ++  +EL   GE WE KAKEL+S E V
Sbjct  171  RETSRKKSLTLEDVRELIEEGVELGIPPPYEDLMAELQELLTAGERWEEKAKELLSRERV  230

Query  625  HYQQLEALSAQALRFPVSPETLSAVDAILTKQREAQKKIQNLYERSKDPDFRKRPKYKEV  684
               QLEALS +A   PVS   L+A+D IL K RE Q++I+ LY+RS   DF KRP   E+
Sbjct  231  SLAQLEALSKEAQEIPVSLPNLAALDEILKKAREWQRQIEALYQRS---DFGKRPTLDEL  287

Query  685  RELMDSLEALNSRPTGAIDLEREQKRHEDWMRKGKKLFGKANAPLHILK  733
             EL+   E+L  +P G  DLE+E KR EDWMR+GKKLF K NAPLH+L+
Sbjct  288  EELLAKGESLPVKPEGLSDLEKEVKRAEDWMRRGKKLFLKKNAPLHLLE  336


>CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase.  The JmjC domain belongs 
to the Cupin superfamily. JmjC-domain proteins may be 
protein hydroxylases that catalyze a novel histone modification. 
This is confirmed to be a hydroxylase: the human JmjC 
protein named Tyw5p unexpectedly acts in the biosynthesis of 
a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe 
by catalyzing hydroxylation.
Length=114

 Score = 173 bits (440),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 59/117 (50%), Positives = 70/117 (60%), Gaps = 3/117 (3%)

Query  93   WVYVGMCFSTFCWHNEDHYAYSANYQHFGATKTWYGIPGSDAEAFEEAMRQAVPELFESQ  152
            W+Y+GM FST  WH ED   YS NY HFGA K WY IP   AE FE+ +          Q
Sbjct  1    WLYLGMPFSTTPWHIEDQGLYSINYLHFGAPKVWYIIPPEYAEKFEKVLS---DHFGGEQ  57

Query  153  PDLLFQLVTLMPPDQLKKAGVNVYALDQRAGQFVITFPKAYHAGFNHGFNFNEAVNF  209
            PD L  L T++ P QL++ G+ VY   Q+ G+FV TFP  YH  FN GFN  EAVNF
Sbjct  58   PDDLLHLNTIISPKQLRENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF  114


>CDD:460750 pfam02928, zf-C5HC2, C5HC2 zinc finger.  Predicted zinc finger 
with eight potential zinc ligand binding residues. This domain 
is found in Jumonji. This domain may have a DNA binding 
function.
Length=54

 Score = 64.2 bits (157),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 8/60 (13%)

Query  317  CQYCKAYTYLTQFRCHK-SGKTVCLLHTETFDCCGDSSSQRLLGPDHTLRYRMSDDTLKA  375
            C +CKAY YL+   C K SGK VCL H +  + C D           TL YR +DD L+A
Sbjct  1    CSFCKAYCYLSAVTCSKCSGKVVCLRHAK--ELCSDCP-----PSKRTLLYRYTDDELEA  53



Lambda      K        H        a         alpha
   0.318    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1046254288


Query= TCONS_00037749

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402894 pfam11496, HDA2-3, Class II histone deacetylase comple...  264     3e-89


>CDD:402894 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 
2 and 3.  This family of class II histone deacetylase complex 
subunits HDA2 and HDA3 is found in fungi, The member from 
S. pombe is referred to as Ccq1 (coiled-coil quantitatively-enriched 
protein 1). These proteins associate with HDA1 
to generate the activity of the HDA1 histone deacetylase complex. 
HDA1 interacts with itself and with the HDA2-HDA3 subcomplex 
to form a probable tetramer and these interactions are 
necessary for catalytic activity. The HDA1 histone deacetylase 
complex is responsible for the deacetylation of lysine 
residues on the N-terminal part of the core histones (H2A, H2B, 
H3 and H4). Histone deacetylation gives a tag for epigenetic 
repression and plays an important role in transcriptional 
regulation, cell cycle progression and developmental events. 
HDA2 and HDA3 have a conserved coiled-coil domain towards 
their C-terminus.
Length=281

 Score = 264 bits (678),  Expect = 3e-89, Method: Composition-based stats.
 Identities = 98/234 (42%), Positives = 126/234 (54%), Gaps = 16/234 (7%)

Query  1    MNSLLERLSNTSTHPDLNITEHIKDSDSDLAKEAAWAEYSSAKFLLLGYLINNASSHD--  58
            M   LE LS  +THP L + +H       L  E     Y+S KFL+L  L+N     D  
Sbjct  50   MTLCLENLSLVATHPYL-LVDHYMPKSLLLKDEPEKLAYTSGKFLVLNDLVNLLIERDRK  108

Query  59   --LHLVIMVHGAKTLKILERFLMGKGLSYTRPRHEMGIGTNLEVS---------MVKESL  107
              +++ I+    KTL ++E  L+GKGLSY R   EM  G N +VS              L
Sbjct  109  EPINVAIVARSGKTLDLVEALLLGKGLSYKRYSGEMLYGENKKVSDSGNKKIHSTTCHLL  168

Query  108  SFGIQSTIDDGIMETYKPPAAIVALDSSFNATSPSVEHMRTTYARHGNLLPVIRLLVSNS  167
            S   Q T DD ++E YK    I+A DSS + +SPSVEH+RT   R GNL P+IRL+V NS
Sbjct  169  SSTGQLTNDDSLLENYKF-DLIIAFDSSVDTSSPSVEHLRTQNRRKGNLAPIIRLVVINS  227

Query  168  SEHVQLCFANYPE-PHRLRLVVQYTSRLRDVVGDLQDDALGVYEDSEEILSSLL  220
             EHV+LCF   P+ P  L  V+     LRDVVGDL DD L +YE   + L+  L
Sbjct  228  IEHVELCFPKPPDSPDYLYKVIAAIVVLRDVVGDLPDDLLPIYEQKLKYLNHWL  281



Lambda      K        H        a         alpha
   0.316    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311165408


Query= TCONS_00037750

Length=1015
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:402894 pfam11496, HDA2-3, Class II histone deacetylase comple...  330     4e-106


>CDD:402894 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 
2 and 3.  This family of class II histone deacetylase complex 
subunits HDA2 and HDA3 is found in fungi, The member from 
S. pombe is referred to as Ccq1 (coiled-coil quantitatively-enriched 
protein 1). These proteins associate with HDA1 
to generate the activity of the HDA1 histone deacetylase complex. 
HDA1 interacts with itself and with the HDA2-HDA3 subcomplex 
to form a probable tetramer and these interactions are 
necessary for catalytic activity. The HDA1 histone deacetylase 
complex is responsible for the deacetylation of lysine 
residues on the N-terminal part of the core histones (H2A, H2B, 
H3 and H4). Histone deacetylation gives a tag for epigenetic 
repression and plays an important role in transcriptional 
regulation, cell cycle progression and developmental events. 
HDA2 and HDA3 have a conserved coiled-coil domain towards 
their C-terminus.
Length=281

 Score = 330 bits (847),  Expect = 4e-106, Method: Composition-based stats.
 Identities = 110/289 (38%), Positives = 150/289 (52%), Gaps = 22/289 (8%)

Query  373  LGPSEFAVPLPMDSRVKDDYERILKDEAQSIDEFLKTFALQAETSRIEQERLIPRMNSLL  432
             G  ++ +P PM S  K+  E+I+      I ++ +T   + + S I+       M   L
Sbjct  1    NGSGDYYLPTPMTSYQKELTEQIVSLHYSDILKYCETSDSKEDISLIK------SMTLCL  54

Query  433  ERLSNTSTHPDLNITEHIKDSDSDLAKEAAWAEYSSAKFLLLGYLINNASSHD----LHL  488
            E LS  +THP L + +H       L  E     Y+S KFL+L  L+N     D    +++
Sbjct  55   ENLSLVATHPYL-LVDHYMPKSLLLKDEPEKLAYTSGKFLVLNDLVNLLIERDRKEPINV  113

Query  489  VIMVHGAKTLKILERFLMGKGLSYTRPRHEMGIGTNLEVS---------MVKESLSFGIQ  539
             I+    KTL ++E  L+GKGLSY R   EM  G N +VS              LS   Q
Sbjct  114  AIVARSGKTLDLVEALLLGKGLSYKRYSGEMLYGENKKVSDSGNKKIHSTTCHLLSSTGQ  173

Query  540  STIDDGIMETYKPPAAIVALDSSFNATSPSVEHMRTTYARHGNLLPVIRLLVSNSSEHVQ  599
             T DD ++E YK    I+A DSS + +SPSVEH+RT   R GNL P+IRL+V NS EHV+
Sbjct  174  LTNDDSLLENYKF-DLIIAFDSSVDTSSPSVEHLRTQNRRKGNLAPIIRLVVINSIEHVE  232

Query  600  LCFANYPE-PHRLRLVVQYTSRLRDVVGDLQDDALGVYEDSEEILSSLL  647
            LCF   P+ P  L  V+     LRDVVGDL DD L +YE   + L+  L
Sbjct  233  LCFPKPPDSPDYLYKVIAAIVVLRDVVGDLPDDLLPIYEQKLKYLNHWL  281



Lambda      K        H        a         alpha
   0.311    0.127    0.354    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1301190044


Query= TCONS_00037751

Length=1234


***** No hits found *****



Lambda      K        H        a         alpha
   0.315    0.130    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1587522606


Query= TCONS_00037752

Length=813
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:462475 pfam08429, PLU-1, PLU-1-like protein. Sequences in thi...  436     3e-148
CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase. The JmjC do...  173     2e-51 
CDD:460750 pfam02928, zf-C5HC2, C5HC2 zinc finger. Predicted zinc...  64.2    1e-13 


>CDD:462475 pfam08429, PLU-1, PLU-1-like protein.  Sequences in this family 
bear similarity to the central region of PLU-1. This is a 
nuclear protein that may have a role in DNA-binding and transcription, 
and is closely associated with the malignant phenotype 
of breast cancer. This region is found in various other 
Jumonji/ARID domain-containing proteins (see pfam02373, pfam01388).
Length=336

 Score = 436 bits (1124),  Expect = 3e-148, Method: Composition-based stats.
 Identities = 170/349 (49%), Positives = 231/349 (66%), Gaps = 17/349 (5%)

Query  389  AWGEKLDKVLENEPKPQLKVLHSLLSEGEKIPYHLHGL-QDLAAFVQRCDKWVEEANNYI  447
             W EK+++ LE EPKP LK L +LL+E EKI + L  L QDL AFVQR +KWVEEA   +
Sbjct  1    TWAEKVEEALEEEPKPSLKELRALLNEAEKIKFPLPELLQDLRAFVQRANKWVEEAQQLL  60

Query  448  TRKQQNRRKNEKAWRKSTSKAAQLEERDREVRRIENMYALLAEADKLSFDCPQMAALEEK  507
            +RKQQ RRKNE          A+ +ER+RE R +E +  LL EAD L FDCP++  L+E 
Sbjct  61   SRKQQTRRKNE----------AEEDEREREKRTVEELRKLLEEADNLPFDCPEIEQLKEL  110

Query  508  TREIEKFRQDVNVALMN-PHIRSIQEVEELVESARNFNVEIPEVEGLEHILRQMRWNDEA  566
              EIE+F++    AL   P   SI+E+EEL+E  ++FNV++PE+E LE +L Q++W +E 
Sbjct  111  LEEIEEFQKRAREALSEEPPSLSIEELEELLEEGKSFNVDLPELEELEKVLEQLKWLEEV  170

Query  567  RR-KRDQYMTLKECQELVQAGEQLGL-SETNEHLSHFKELCRHGETWEAKAKELMSVESV  624
            R   R + +TL++ +EL++ G +LG+     + ++  +EL   GE WE KAKEL+S E V
Sbjct  171  RETSRKKSLTLEDVRELIEEGVELGIPPPYEDLMAELQELLTAGERWEEKAKELLSRERV  230

Query  625  HYQQLEALSAQALRFPVSPETLSAVDAILTKQREAQKKIQNLYERSKDPDFRKRPKYKEV  684
               QLEALS +A   PVS   L+A+D IL K RE Q++I+ LY+RS   DF KRP   E+
Sbjct  231  SLAQLEALSKEAQEIPVSLPNLAALDEILKKAREWQRQIEALYQRS---DFGKRPTLDEL  287

Query  685  RELMDSLEALNSRPTGAIDLEREQKRHEDWMRKGKKLFGKANAPLHILK  733
             EL+   E+L  +P G  DLE+E KR EDWMR+GKKLF K NAPLH+L+
Sbjct  288  EELLAKGESLPVKPEGLSDLEKEVKRAEDWMRRGKKLFLKKNAPLHLLE  336


>CDD:396791 pfam02373, JmjC, JmjC domain, hydroxylase.  The JmjC domain belongs 
to the Cupin superfamily. JmjC-domain proteins may be 
protein hydroxylases that catalyze a novel histone modification. 
This is confirmed to be a hydroxylase: the human JmjC 
protein named Tyw5p unexpectedly acts in the biosynthesis of 
a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe 
by catalyzing hydroxylation.
Length=114

 Score = 173 bits (440),  Expect = 2e-51, Method: Composition-based stats.
 Identities = 59/117 (50%), Positives = 70/117 (60%), Gaps = 3/117 (3%)

Query  93   WVYVGMCFSTFCWHNEDHYAYSANYQHFGATKTWYGIPGSDAEAFEEAMRQAVPELFESQ  152
            W+Y+GM FST  WH ED   YS NY HFGA K WY IP   AE FE+ +          Q
Sbjct  1    WLYLGMPFSTTPWHIEDQGLYSINYLHFGAPKVWYIIPPEYAEKFEKVLS---DHFGGEQ  57

Query  153  PDLLFQLVTLMPPDQLKKAGVNVYALDQRAGQFVITFPKAYHAGFNHGFNFNEAVNF  209
            PD L  L T++ P QL++ G+ VY   Q+ G+FV TFP  YH  FN GFN  EAVNF
Sbjct  58   PDDLLHLNTIISPKQLRENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF  114


>CDD:460750 pfam02928, zf-C5HC2, C5HC2 zinc finger.  Predicted zinc finger 
with eight potential zinc ligand binding residues. This domain 
is found in Jumonji. This domain may have a DNA binding 
function.
Length=54

 Score = 64.2 bits (157),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 8/60 (13%)

Query  317  CQYCKAYTYLTQFRCHK-SGKTVCLLHTETFDCCGDSSSQRLLGPDHTLRYRMSDDTLKA  375
            C +CKAY YL+   C K SGK VCL H +  + C D           TL YR +DD L+A
Sbjct  1    CSFCKAYCYLSAVTCSKCSGKVVCLRHAK--ELCSDCP-----PSKRTLLYRYTDDELEA  53



Lambda      K        H        a         alpha
   0.318    0.132    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1046254288


Query= TCONS_00037754

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426314 pfam01541, GIY-YIG, GIY-YIG catalytic domain. This dom...  63.5    2e-13


>CDD:426314 pfam01541, GIY-YIG, GIY-YIG catalytic domain.  This domain called 
GIY-YIG is found in the amino terminal region of excinuclease 
abc subunit c (uvrC), bacteriophage T4 endonucleases 
segA, segB, segC, segD and segE; it is also found in putative 
endonucleases encoded by group I introns of fungi and phage. 
The structure of I-TevI a GIY-YIG endonuclease, reveals a 
novel alpha/beta-fold with a central three-stranded antiparallel 
beta-sheet flanked by three helices. The most conserved 
and putative catalytic residues are located on a shallow, 
concave surface and include a metal coordination site.
Length=78

 Score = 63.5 bits (155),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 22/79 (28%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query  15  FYCCYLLRSTVRHASLYIGSTPNPARRLIQHNGVVKGGARRTAAEKLRPWEMVLVVEGFM  74
               Y++R+      LY+GST N  RRL QHN        R     + P++++  +E F 
Sbjct  1   KGGIYIIRNKDN-KLLYVGSTKNLERRLNQHNAGKGAKYTRGK--GVEPFKLI-YLEEFP  56

Query  75  SRLAALQFEWAWQNPWYSR  93
           ++  AL+ E       Y  
Sbjct  57  TKSEALELEKYLIK-LYRP  74



Lambda      K        H        a         alpha
   0.321    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00037755

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426314 pfam01541, GIY-YIG, GIY-YIG catalytic domain. This dom...  63.5    2e-13


>CDD:426314 pfam01541, GIY-YIG, GIY-YIG catalytic domain.  This domain called 
GIY-YIG is found in the amino terminal region of excinuclease 
abc subunit c (uvrC), bacteriophage T4 endonucleases 
segA, segB, segC, segD and segE; it is also found in putative 
endonucleases encoded by group I introns of fungi and phage. 
The structure of I-TevI a GIY-YIG endonuclease, reveals a 
novel alpha/beta-fold with a central three-stranded antiparallel 
beta-sheet flanked by three helices. The most conserved 
and putative catalytic residues are located on a shallow, 
concave surface and include a metal coordination site.
Length=78

 Score = 63.5 bits (155),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 22/79 (28%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query  15  FYCCYLLRSTVRHASLYIGSTPNPARRLIQHNGVVKGGARRTAAEKLRPWEMVLVVEGFM  74
               Y++R+      LY+GST N  RRL QHN        R     + P++++  +E F 
Sbjct  1   KGGIYIIRNKDN-KLLYVGSTKNLERRLNQHNAGKGAKYTRGK--GVEPFKLI-YLEEFP  56

Query  75  SRLAALQFEWAWQNPWYSR  93
           ++  AL+ E       Y  
Sbjct  57  TKSEALELEKYLIK-LYRP  74



Lambda      K        H        a         alpha
   0.321    0.135    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 518816228


Query= TCONS_00037756

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:396687 pfam02219, MTHFR, Methylenetetrahydrofolate reductase....  258     2e-82


>CDD:396687 pfam02219, MTHFR, Methylenetetrahydrofolate reductase.  This 
family includes the 5,10-methylenetetrahydrofolate reductase 
EC:1.7.99.5 from bacteria and methylenetetrahydrofolate reductase 
EC: 1.5.1.20 from eukaryotes. The structure for this 
domain is known to be a TIM barrel.
Length=287

 Score = 258 bits (661),  Expect = 2e-82, Method: Composition-based stats.
 Identities = 111/222 (50%), Positives = 141/222 (64%), Gaps = 16/222 (7%)

Query  1    MSRALIDEALEEAKVLGIRNILALRGDPPRSEEYNTHGEDDSNKDFTFAVDLVRYIRKMY  60
            MS+  +D+ALE+AK LGIRNILALRGDPP+  +     E      F +A+DLVR IR+ Y
Sbjct  82   MSKEELDDALEDAKALGIRNILALRGDPPKGTDDWERPEGG----FKYALDLVRLIRQEY  137

Query  61   GDYFCLGVAAYPEGHPVDSYQDVQDPVRDLPYLVEKTLAGADFIMTQLTYDIDAYTKFEQ  120
            GDYF +GVAAYPEGHP       +    DL YL EK  AGADFI+TQL +D+D + +F  
Sbjct  138  GDYFDIGVAAYPEGHPEA-----KSWQADLKYLKEKVDAGADFIITQLFFDVDNFLRFVD  192

Query  121  MLRNHESGAFKTIPIIPGLMPIHSYKILTRTTKLSHVKIPPQIMSKLEAVKHDDDAVKRI  180
             +R         IPIIPG+MPI SYK L R  KLS V IP +++ +LE +K DD+AVK I
Sbjct  193  RVRAAGI----DIPIIPGIMPITSYKSLKRIAKLSGVSIPQELIDRLEPIKDDDEAVKSI  248

Query  181  GVDVLSDLVEAIKKIPCPGFRGFHFYTLNLEKTVSFIIERCG  222
            G+++    VE  KK+   G  G HFYTLN E+    I+E  G
Sbjct  249  GIEL---AVEMCKKLLAEGVPGLHFYTLNREEATLEILENLG  287



Lambda      K        H        a         alpha
   0.318    0.136    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 762158280


Query= TCONS_00043235

Length=152


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.137    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127729706


Query= TCONS_00037757

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase. This ...  223     2e-69


>CDD:460299 pfam01702, TGT, Queuine tRNA-ribosyltransferase.  This is a family 
of queuine tRNA-ribosyltransferases EC:2.4.2.29, also 
known as tRNA-guanine transglycosylase and guanine insertion 
enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for 
asparagine, aspartic acid, histidine and tyrosine with queuine. 
It catalyzes the exchange of guanine-34 at the wobble position 
with 7-aminomethyl-7-deazaguanine, and the addition of 
a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 
tRNA; giving a hypermodified base queuine in the wobble position. 
The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, 
and important tRNA and 7-aminomethyl-7deazaguanine 
binding residues.
Length=358

 Score = 223 bits (572),  Expect = 2e-69, Method: Composition-based stats.
 Identities = 112/415 (27%), Positives = 158/415 (38%), Gaps = 88/415 (21%)

Query  29   APRLGNLAIAGRKAIPTPNYIPLTSRGAVPHIAHDVMRD---QTAIGSLFI-----GLED  80
            A RLG L       I TP ++P+ ++G V  +  D +++   Q  +G+ +      GLE 
Sbjct  3    AARLGRLTTP-HGVIETPAFMPVGTQGTVKGLTPDELKELGAQIILGNTYHLYLRPGLE-  60

Query  81   FIERKAHTGPLRNGRPPIYNVPTAPHESALRKFISVPEDFLLILGPRRVPSIACPPNNTP  140
                    G                    L KF+      L   G  +V S+A     T 
Sbjct  61   --LVAKAGG--------------------LHKFMGWDGPILTDSGGFQVFSLAKLRKITE  98

Query  141  NSISILTSV-GFR-QLEAGEYVEAVRKLRPDIVVGLADLAQGQTPGTKRRVKMADRTHAF  198
              ++  + + G +  L   E +E    L  DI + L +         KR  K  +RT  +
Sbjct  99   EGVTFRSHIDGSKHFLTPEESMEIQEALGSDIAMALDECT-PYPASRKRAEKSVERTLRW  157

Query  199  TSHALEQLYGQTVPEGSRSKSAYFAPVLPLENTQQSLYLADLE----HELRPH------I  248
                LE               A F  V      Q  LY  DL      EL         I
Sbjct  158  AERCLEAHKRP-------EDQALFGIV------QGGLYP-DLREESAEELAELDFDGYAI  203

Query  249  SGLALHES---------ASLSILPEKLGNLPRLLFSDPATPHDILRQVSLGADIFTIPFL  299
             GL++ E          A+  +LPE   + PR L     TP DIL  V+LG D+F   + 
Sbjct  204  GGLSVGEPKEEMYEIVEATTPLLPE---DKPRYLM-GVGTPEDILEAVALGVDMFDCVYP  259

Query  300  GATSDAGIALDFTFPAPSTVETIVSEPRPLAFDLWSTSFKVDTAPLNTSCECYTCKNHHR  359
               +  G AL        T E  +        +L +  +  D  PL+  C CYTC+N+ R
Sbjct  260  TRNARNGRAL--------TSEGTL--------NLRNAKYAEDFRPLDEGCSCYTCRNYSR  303

Query  360  AYIHHLLSAKEMLAWTLLQIHNHHIMDKFFSAIRTSIERETFLTDADMFHRFYAP  414
            AY+ HLL AKEML   LL IHN H   +    IR +I+   F    + F R Y  
Sbjct  304  AYLRHLLKAKEMLGARLLTIHNLHFYLELMREIRQAIKEGRFEEFVEEFLRKYPS  358



Lambda      K        H        a         alpha
   0.319    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 595027938


Query= TCONS_00037758

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431208 pfam10306, FLILHELTA, Hypothetical protein FLILHELTA. ...  128     2e-38


>CDD:431208 pfam10306, FLILHELTA, Hypothetical protein FLILHELTA.  This is 
a family of conserved proteins found in fungi. It contains 
a characteristic FL(I)LHE(L)TA sequence motif, where the bracketed 
residues are I, L or V. The function is not known.
Length=82

 Score = 128 bits (323),  Expect = 2e-38, Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 54/81 (67%), Gaps = 0/81 (0%)

Query  103  RLNDRLPPFLRSYTTPLLGAPGTHITSFLILHEITAIVPLLGLVASFHYGDWLPDFTSKS  162
            R+  RLP FLR YT PL  AP +H+TSFLILHE+TAIVPL GL   FHY D   D     
Sbjct  1    RILSRLPKFLRPYTRPLRNAPVSHVTSFLILHELTAIVPLFGLWYLFHYLDIPDDLPDGW  60

Query  163  GFDEGVQRFGRWLRKKGWVED  183
              D+GV+RFGR+ RKKGW   
Sbjct  61   YIDKGVERFGRYFRKKGWDGF  81



Lambda      K        H        a         alpha
   0.317    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0660    0.140     1.90     42.6     43.6 

Effective search space used: 293430592


Query= TCONS_00043236

Length=39


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82767636


Query= TCONS_00037759

Length=967
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family ...  597     0.0  
CDD:463987 pfam13802, Gal_mutarotas_2, Galactose mutarotase-like....  96.8    6e-25


>CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31.  Glycosyl 
hydrolases are key enzymes of carbohydrate metabolism. 
Family 31 comprises of enzymes that are, or similar to, alpha- 
galactosidases.
Length=443

 Score = 597 bits (1541),  Expect = 0.0, Method: Composition-based stats.
 Identities = 221/457 (48%), Positives = 279/457 (61%), Gaps = 23/457 (5%)

Query  372  FVFLGPTPQEISKTYGELTGYTQLPQQFAIAYHQCRWNYVTDEDVKEVDRKFDKYQIPYD  431
            + FLGPTP+++ K Y ELTG   LP  +A+ YHQ RW Y ++E+V EV   F +  IP D
Sbjct  1    YFFLGPTPKDVVKQYTELTGRPPLPPYWALGYHQSRWGYKSEEEVLEVVDGFRERDIPLD  60

Query  432  VIWLDIEYTDDRKYFTWDPLSFPDPKGMEEQLDDSERKLVVIIDPHI-KNKEGYSISEEL  490
            VIWLDI+Y D  + FTWDP  FPDPKGM ++L    +KLVVIIDP I K   GY   +E 
Sbjct  61   VIWLDIDYMDGYRDFTWDPERFPDPKGMVDELHAKGQKLVVIIDPGIKKVDPGYPPYDEG  120

Query  491  KGKDLAIKNKGGETYDGWCWPGSSHWVDCFNPEAIKWWTGLFKYDKFKGTQPNVFIWNDM  550
              K   +KN  G  Y G  WPG S + D  NPEA  WW       KF        IWNDM
Sbjct  121  LEKGYFVKNPDGSLYVGG-WPGMSAFPDFTNPEARDWWADQLF--KFLLDMGVDGIWNDM  177

Query  551  NEPSVF--NGPETTMPKDNIHYGNWEHRDVHNVNGLTFINATYNALLERKKGVVRRPFVL  608
            NEPSVF  +GPE T+ KDN   G  EH DVHN+ GL    ATY  L E++    +RPFVL
Sbjct  178  NEPSVFCGSGPEDTVAKDNDPGGGVEHYDVHNLYGLLMAKATYEGLREKRPN--KRPFVL  235

Query  609  TRSFYAGAQRVSAMWTGDNQATWEHLAASLPMVLNNGIAGFPFAGADVGGFFQNPSKELL  668
            TRS +AG+QR +A W+GDN +TWEHL  S+P  L+ G++G PF GAD+GGFF   + EL 
Sbjct  236  TRSGFAGSQRYAAHWSGDNTSTWEHLRFSIPGGLSLGLSGIPFWGADIGGFFNPTTPELY  295

Query  669  TRWYQAGIWYPFFRAHAHIDTRRREPYLIAEPFRSIISQAIRLRYQLLPAWYTAFHEASV  728
             RWYQ G + PFFR H+ IDTRRREP+L  E    II +AIRLRY+LLP  YT F+EA  
Sbjct  296  VRWYQLGAFSPFFRNHSSIDTRRREPWLFGEEVEEIIRKAIRLRYRLLPYLYTLFYEAHE  355

Query  729  NGMPIVRPQYYVHPADEQGFAIDDQLYLGSTGLLAKPVVVEGATTTDIYIADDEKYYDYY  788
             G+P++RP +   P D   F IDDQ   G   LL  PV+ EGAT+ D+Y+          
Sbjct  356  TGLPVMRPLFLEFPDDPNTFDIDDQFMFGP-SLLVAPVLEEGATSVDVYLP-------GG  407

Query  789  DF------TVYQGAGRRHTVPSPIEKVPLLMQGGHII  819
             +        Y+G G    V +P++++PL ++GG II
Sbjct  408  RWYDFWTGERYEG-GGTVPVTAPLDRIPLFVRGGSII  443


>CDD:463987 pfam13802, Gal_mutarotas_2, Galactose mutarotase-like.  This 
family is found N-terminal to glycosyl-hydrolase domains, and 
appears to be similar to the galactose mutarotase superfamily.
Length=67

 Score = 96.8 bits (242),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 32/75 (43%), Positives = 43/75 (57%), Gaps = 10/75 (13%)

Query  263  HVFGIPEHADSMSLKETRGGDGNHAEPYRMYNTDVFEYELNSPMTLYGAIPFMQAHKKDS  322
            HV+G+ E A  ++ + TR         YR++NTD F YEL++   LY +IPF  +H    
Sbjct  3    HVYGLGERAGPLNKRGTR---------YRLWNTDAFGYELDT-DPLYKSIPFYISHNGGR  52

Query  323  TVGVFWLNAAETWVD  337
              GVFW N AETW D
Sbjct  53   GYGVFWDNPAETWFD  67



Lambda      K        H        a         alpha
   0.317    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1233227996


Query= TCONS_00043237

Length=967
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family ...  597     0.0  
CDD:463987 pfam13802, Gal_mutarotas_2, Galactose mutarotase-like....  96.8    6e-25


>CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31.  Glycosyl 
hydrolases are key enzymes of carbohydrate metabolism. 
Family 31 comprises of enzymes that are, or similar to, alpha- 
galactosidases.
Length=443

 Score = 597 bits (1541),  Expect = 0.0, Method: Composition-based stats.
 Identities = 221/457 (48%), Positives = 279/457 (61%), Gaps = 23/457 (5%)

Query  372  FVFLGPTPQEISKTYGELTGYTQLPQQFAIAYHQCRWNYVTDEDVKEVDRKFDKYQIPYD  431
            + FLGPTP+++ K Y ELTG   LP  +A+ YHQ RW Y ++E+V EV   F +  IP D
Sbjct  1    YFFLGPTPKDVVKQYTELTGRPPLPPYWALGYHQSRWGYKSEEEVLEVVDGFRERDIPLD  60

Query  432  VIWLDIEYTDDRKYFTWDPLSFPDPKGMEEQLDDSERKLVVIIDPHI-KNKEGYSISEEL  490
            VIWLDI+Y D  + FTWDP  FPDPKGM ++L    +KLVVIIDP I K   GY   +E 
Sbjct  61   VIWLDIDYMDGYRDFTWDPERFPDPKGMVDELHAKGQKLVVIIDPGIKKVDPGYPPYDEG  120

Query  491  KGKDLAIKNKGGETYDGWCWPGSSHWVDCFNPEAIKWWTGLFKYDKFKGTQPNVFIWNDM  550
              K   +KN  G  Y G  WPG S + D  NPEA  WW       KF        IWNDM
Sbjct  121  LEKGYFVKNPDGSLYVGG-WPGMSAFPDFTNPEARDWWADQLF--KFLLDMGVDGIWNDM  177

Query  551  NEPSVF--NGPETTMPKDNIHYGNWEHRDVHNVNGLTFINATYNALLERKKGVVRRPFVL  608
            NEPSVF  +GPE T+ KDN   G  EH DVHN+ GL    ATY  L E++    +RPFVL
Sbjct  178  NEPSVFCGSGPEDTVAKDNDPGGGVEHYDVHNLYGLLMAKATYEGLREKRPN--KRPFVL  235

Query  609  TRSFYAGAQRVSAMWTGDNQATWEHLAASLPMVLNNGIAGFPFAGADVGGFFQNPSKELL  668
            TRS +AG+QR +A W+GDN +TWEHL  S+P  L+ G++G PF GAD+GGFF   + EL 
Sbjct  236  TRSGFAGSQRYAAHWSGDNTSTWEHLRFSIPGGLSLGLSGIPFWGADIGGFFNPTTPELY  295

Query  669  TRWYQAGIWYPFFRAHAHIDTRRREPYLIAEPFRSIISQAIRLRYQLLPAWYTAFHEASV  728
             RWYQ G + PFFR H+ IDTRRREP+L  E    II +AIRLRY+LLP  YT F+EA  
Sbjct  296  VRWYQLGAFSPFFRNHSSIDTRRREPWLFGEEVEEIIRKAIRLRYRLLPYLYTLFYEAHE  355

Query  729  NGMPIVRPQYYVHPADEQGFAIDDQLYLGSTGLLAKPVVVEGATTTDIYIADDEKYYDYY  788
             G+P++RP +   P D   F IDDQ   G   LL  PV+ EGAT+ D+Y+          
Sbjct  356  TGLPVMRPLFLEFPDDPNTFDIDDQFMFGP-SLLVAPVLEEGATSVDVYLP-------GG  407

Query  789  DF------TVYQGAGRRHTVPSPIEKVPLLMQGGHII  819
             +        Y+G G    V +P++++PL ++GG II
Sbjct  408  RWYDFWTGERYEG-GGTVPVTAPLDRIPLFVRGGSII  443


>CDD:463987 pfam13802, Gal_mutarotas_2, Galactose mutarotase-like.  This 
family is found N-terminal to glycosyl-hydrolase domains, and 
appears to be similar to the galactose mutarotase superfamily.
Length=67

 Score = 96.8 bits (242),  Expect = 6e-25, Method: Composition-based stats.
 Identities = 32/75 (43%), Positives = 43/75 (57%), Gaps = 10/75 (13%)

Query  263  HVFGIPEHADSMSLKETRGGDGNHAEPYRMYNTDVFEYELNSPMTLYGAIPFMQAHKKDS  322
            HV+G+ E A  ++ + TR         YR++NTD F YEL++   LY +IPF  +H    
Sbjct  3    HVYGLGERAGPLNKRGTR---------YRLWNTDAFGYELDT-DPLYKSIPFYISHNGGR  52

Query  323  TVGVFWLNAAETWVD  337
              GVFW N AETW D
Sbjct  53   GYGVFWDNPAETWFD  67



Lambda      K        H        a         alpha
   0.317    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1233227996


Query= TCONS_00043238

Length=745
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family ...  584     0.0  
CDD:463987 pfam13802, Gal_mutarotas_2, Galactose mutarotase-like....  94.5    3e-24


>CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31.  Glycosyl 
hydrolases are key enzymes of carbohydrate metabolism. 
Family 31 comprises of enzymes that are, or similar to, alpha- 
galactosidases.
Length=443

 Score = 584 bits (1507),  Expect = 0.0, Method: Composition-based stats.
 Identities = 221/457 (48%), Positives = 279/457 (61%), Gaps = 23/457 (5%)

Query  150  FVFLGPTPQEISKTYGELTGYTQLPQQFAIAYHQCRWNYVTDEDVKEVDRKFDKYQIPYD  209
            + FLGPTP+++ K Y ELTG   LP  +A+ YHQ RW Y ++E+V EV   F +  IP D
Sbjct  1    YFFLGPTPKDVVKQYTELTGRPPLPPYWALGYHQSRWGYKSEEEVLEVVDGFRERDIPLD  60

Query  210  VIWLDIEYTDDRKYFTWDPLSFPDPKGMEEQLDDSERKLVVIIDPHI-KNKEGYSISEEL  268
            VIWLDI+Y D  + FTWDP  FPDPKGM ++L    +KLVVIIDP I K   GY   +E 
Sbjct  61   VIWLDIDYMDGYRDFTWDPERFPDPKGMVDELHAKGQKLVVIIDPGIKKVDPGYPPYDEG  120

Query  269  KGKDLAIKNKGGETYDGWCWPGSSHWVDCFNPEAIKWWTGLFKYDKFKGTQPNVFIWNDM  328
              K   +KN  G  Y G  WPG S + D  NPEA  WW       KF        IWNDM
Sbjct  121  LEKGYFVKNPDGSLYVGG-WPGMSAFPDFTNPEARDWWADQLF--KFLLDMGVDGIWNDM  177

Query  329  NEPSVF--NGPETTMPKDNIHYGNWEHRDVHNVNGLTFINATYNALLERKKGVVRRPFVL  386
            NEPSVF  +GPE T+ KDN   G  EH DVHN+ GL    ATY  L E++    +RPFVL
Sbjct  178  NEPSVFCGSGPEDTVAKDNDPGGGVEHYDVHNLYGLLMAKATYEGLREKRPN--KRPFVL  235

Query  387  TRSFYAGAQRVSAMWTGDNQATWEHLAASLPMVLNNGIAGFPFAGADVGGFFQNPSKELL  446
            TRS +AG+QR +A W+GDN +TWEHL  S+P  L+ G++G PF GAD+GGFF   + EL 
Sbjct  236  TRSGFAGSQRYAAHWSGDNTSTWEHLRFSIPGGLSLGLSGIPFWGADIGGFFNPTTPELY  295

Query  447  TRWYQAGIWYPFFRAHAHIDTRRREPYLIAEPFRSIISQAIRLRYQLLPAWYTAFHEASV  506
             RWYQ G + PFFR H+ IDTRRREP+L  E    II +AIRLRY+LLP  YT F+EA  
Sbjct  296  VRWYQLGAFSPFFRNHSSIDTRRREPWLFGEEVEEIIRKAIRLRYRLLPYLYTLFYEAHE  355

Query  507  NGMPIVRPQYYVHPADEQGFAIDDQLYLGSTGLLAKPVVVEGATTTDIYIADDEKYYDYY  566
             G+P++RP +   P D   F IDDQ   G   LL  PV+ EGAT+ D+Y+          
Sbjct  356  TGLPVMRPLFLEFPDDPNTFDIDDQFMFGP-SLLVAPVLEEGATSVDVYLP-------GG  407

Query  567  DF------TVYQGAGRRHTVPSPIEKVPLLMQGGHII  597
             +        Y+G G    V +P++++PL ++GG II
Sbjct  408  RWYDFWTGERYEG-GGTVPVTAPLDRIPLFVRGGSII  443


>CDD:463987 pfam13802, Gal_mutarotas_2, Galactose mutarotase-like.  This 
family is found N-terminal to glycosyl-hydrolase domains, and 
appears to be similar to the galactose mutarotase superfamily.
Length=67

 Score = 94.5 bits (236),  Expect = 3e-24, Method: Composition-based stats.
 Identities = 32/75 (43%), Positives = 43/75 (57%), Gaps = 10/75 (13%)

Query  41   HVFGIPEHADSMSLKETRGGDGNHAEPYRMYNTDVFEYELNSPMTLYGAIPFMQAHKKDS  100
            HV+G+ E A  ++ + TR         YR++NTD F YEL++   LY +IPF  +H    
Sbjct  3    HVYGLGERAGPLNKRGTR---------YRLWNTDAFGYELDT-DPLYKSIPFYISHNGGR  52

Query  101  TVGVFWLNAAETWVD  115
              GVFW N AETW D
Sbjct  53   GYGVFWDNPAETWFD  67



Lambda      K        H        a         alpha
   0.319    0.137    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 947303952


Query= TCONS_00043239

Length=850
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family ...  589     0.0  
CDD:463987 pfam13802, Gal_mutarotas_2, Galactose mutarotase-like....  95.2    2e-24


>CDD:460044 pfam01055, Glyco_hydro_31, Glycosyl hydrolases family 31.  Glycosyl 
hydrolases are key enzymes of carbohydrate metabolism. 
Family 31 comprises of enzymes that are, or similar to, alpha- 
galactosidases.
Length=443

 Score = 589 bits (1522),  Expect = 0.0, Method: Composition-based stats.
 Identities = 221/457 (48%), Positives = 279/457 (61%), Gaps = 23/457 (5%)

Query  255  FVFLGPTPQEISKTYGELTGYTQLPQQFAIAYHQCRWNYVTDEDVKEVDRKFDKYQIPYD  314
            + FLGPTP+++ K Y ELTG   LP  +A+ YHQ RW Y ++E+V EV   F +  IP D
Sbjct  1    YFFLGPTPKDVVKQYTELTGRPPLPPYWALGYHQSRWGYKSEEEVLEVVDGFRERDIPLD  60

Query  315  VIWLDIEYTDDRKYFTWDPLSFPDPKGMEEQLDDSERKLVVIIDPHI-KNKEGYSISEEL  373
            VIWLDI+Y D  + FTWDP  FPDPKGM ++L    +KLVVIIDP I K   GY   +E 
Sbjct  61   VIWLDIDYMDGYRDFTWDPERFPDPKGMVDELHAKGQKLVVIIDPGIKKVDPGYPPYDEG  120

Query  374  KGKDLAIKNKGGETYDGWCWPGSSHWVDCFNPEAIKWWTGLFKYDKFKGTQPNVFIWNDM  433
              K   +KN  G  Y G  WPG S + D  NPEA  WW       KF        IWNDM
Sbjct  121  LEKGYFVKNPDGSLYVGG-WPGMSAFPDFTNPEARDWWADQLF--KFLLDMGVDGIWNDM  177

Query  434  NEPSVF--NGPETTMPKDNIHYGNWEHRDVHNVNGLTFINATYNALLERKKGVVRRPFVL  491
            NEPSVF  +GPE T+ KDN   G  EH DVHN+ GL    ATY  L E++    +RPFVL
Sbjct  178  NEPSVFCGSGPEDTVAKDNDPGGGVEHYDVHNLYGLLMAKATYEGLREKRPN--KRPFVL  235

Query  492  TRSFYAGAQRVSAMWTGDNQATWEHLAASLPMVLNNGIAGFPFAGADVGGFFQNPSKELL  551
            TRS +AG+QR +A W+GDN +TWEHL  S+P  L+ G++G PF GAD+GGFF   + EL 
Sbjct  236  TRSGFAGSQRYAAHWSGDNTSTWEHLRFSIPGGLSLGLSGIPFWGADIGGFFNPTTPELY  295

Query  552  TRWYQAGIWYPFFRAHAHIDTRRREPYLIAEPFRSIISQAIRLRYQLLPAWYTAFHEASV  611
             RWYQ G + PFFR H+ IDTRRREP+L  E    II +AIRLRY+LLP  YT F+EA  
Sbjct  296  VRWYQLGAFSPFFRNHSSIDTRRREPWLFGEEVEEIIRKAIRLRYRLLPYLYTLFYEAHE  355

Query  612  NGMPIVRPQYYVHPADEQGFAIDDQLYLGSTGLLAKPVVVEGATTTDIYIADDEKYYDYY  671
             G+P++RP +   P D   F IDDQ   G   LL  PV+ EGAT+ D+Y+          
Sbjct  356  TGLPVMRPLFLEFPDDPNTFDIDDQFMFGP-SLLVAPVLEEGATSVDVYLP-------GG  407

Query  672  DF------TVYQGAGRRHTVPSPIEKVPLLMQGGHII  702
             +        Y+G G    V +P++++PL ++GG II
Sbjct  408  RWYDFWTGERYEG-GGTVPVTAPLDRIPLFVRGGSII  443


>CDD:463987 pfam13802, Gal_mutarotas_2, Galactose mutarotase-like.  This 
family is found N-terminal to glycosyl-hydrolase domains, and 
appears to be similar to the galactose mutarotase superfamily.
Length=67

 Score = 95.2 bits (238),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 32/75 (43%), Positives = 43/75 (57%), Gaps = 10/75 (13%)

Query  146  HVFGIPEHADSMSLKETRGGDGNHAEPYRMYNTDVFEYELNSPMTLYGAIPFMQAHKKDS  205
            HV+G+ E A  ++ + TR         YR++NTD F YEL++   LY +IPF  +H    
Sbjct  3    HVYGLGERAGPLNKRGTR---------YRLWNTDAFGYELDT-DPLYKSIPFYISHNGGR  52

Query  206  TVGVFWLNAAETWVD  220
              GVFW N AETW D
Sbjct  53   GYGVFWDNPAETWFD  67



Lambda      K        H        a         alpha
   0.317    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1083813070


Query= TCONS_00043240

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461220 pfam04193, PQ-loop, PQ loop repeat. Members of this fa...  56.7    1e-11


>CDD:461220 pfam04193, PQ-loop, PQ loop repeat.  Members of this family are 
all membrane bound proteins possessing a pair of repeats 
each spanning two transmembrane helices connected by a loop. 
The PQ motif found on loop 2 is critical for the localization 
of cystinosin to lysosomes. However, the PQ motif appears 
not to be a general lysosome-targeting motif. It is thought 
likely to possess a more general function. Most probably this 
involves a glutamine residue. Family members are membrane 
transporters since two members, cystinosin and PQLC2, transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts 
the substrate-coupled H+ binding site underlying its H+ symport 
mechanism, suggesting that PQ-loop repeats have functional 
significance. It is thus likely that PQ-loop-containing proteins 
act as a family of membrane transporters. Some transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. Others transport lysine and or arginine 
across the lysosomal membrane in order to maintain the acidic 
homoeostasis.
Length=61

 Score = 56.7 bits (138),  Expect = 1e-11, Method: Composition-based stats.
 Identities = 17/61 (28%), Positives = 31/61 (51%), Gaps = 0/61 (0%)

Query  154  YVSLLGYAGLAVEAILPLPQIVANHRTRSCKGFRVSVLAAWILGDVMKMSYFFCSKEVIP  213
              ++LGY  L +  +  LPQI+ N++ +S +G  +  L  W+LGD+  + Y   +     
Sbjct  1    LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  214  W  214
             
Sbjct  61   L  61



Lambda      K        H        a         alpha
   0.328    0.141    0.458    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 293740920


Query= TCONS_00037762

Length=110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461220 pfam04193, PQ-loop, PQ loop repeat. Members of this fa...  53.3    2e-11


>CDD:461220 pfam04193, PQ-loop, PQ loop repeat.  Members of this family are 
all membrane bound proteins possessing a pair of repeats 
each spanning two transmembrane helices connected by a loop. 
The PQ motif found on loop 2 is critical for the localization 
of cystinosin to lysosomes. However, the PQ motif appears 
not to be a general lysosome-targeting motif. It is thought 
likely to possess a more general function. Most probably this 
involves a glutamine residue. Family members are membrane 
transporters since two members, cystinosin and PQLC2, transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts 
the substrate-coupled H+ binding site underlying its H+ symport 
mechanism, suggesting that PQ-loop repeats have functional 
significance. It is thus likely that PQ-loop-containing proteins 
act as a family of membrane transporters. Some transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. Others transport lysine and or arginine 
across the lysosomal membrane in order to maintain the acidic 
homoeostasis.
Length=61

 Score = 53.3 bits (129),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 17/61 (28%), Positives = 31/61 (51%), Gaps = 0/61 (0%)

Query  26  YVSLLGYAGLAVEAILPLPQIVANHRTRSCKGFRVSVLAAWILGDVMKMSYFFCSKEVIP  85
             ++LGY  L +  +  LPQI+ N++ +S +G  +  L  W+LGD+  + Y   +     
Sbjct  1   LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  86  W  86
            
Sbjct  61  L  61



Lambda      K        H        a         alpha
   0.335    0.146    0.491    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82561080


Query= TCONS_00037761

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461220 pfam04193, PQ-loop, PQ loop repeat. Members of this fa...  54.8    2e-11


>CDD:461220 pfam04193, PQ-loop, PQ loop repeat.  Members of this family are 
all membrane bound proteins possessing a pair of repeats 
each spanning two transmembrane helices connected by a loop. 
The PQ motif found on loop 2 is critical for the localization 
of cystinosin to lysosomes. However, the PQ motif appears 
not to be a general lysosome-targeting motif. It is thought 
likely to possess a more general function. Most probably this 
involves a glutamine residue. Family members are membrane 
transporters since two members, cystinosin and PQLC2, transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts 
the substrate-coupled H+ binding site underlying its H+ symport 
mechanism, suggesting that PQ-loop repeats have functional 
significance. It is thus likely that PQ-loop-containing proteins 
act as a family of membrane transporters. Some transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. Others transport lysine and or arginine 
across the lysosomal membrane in order to maintain the acidic 
homoeostasis.
Length=61

 Score = 54.8 bits (133),  Expect = 2e-11, Method: Composition-based stats.
 Identities = 17/61 (28%), Positives = 31/61 (51%), Gaps = 0/61 (0%)

Query  107  YVSLLGYAGLAVEAILPLPQIVANHRTRSCKGFRVSVLAAWILGDVMKMSYFFCSKEVIP  166
              ++LGY  L +  +  LPQI+ N++ +S +G  +  L  W+LGD+  + Y   +     
Sbjct  1    LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  167  W  167
             
Sbjct  61   L  61



Lambda      K        H        a         alpha
   0.331    0.143    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00037763

Length=137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461220 pfam04193, PQ-loop, PQ loop repeat. Members of this fa...  58.7    2e-13


>CDD:461220 pfam04193, PQ-loop, PQ loop repeat.  Members of this family are 
all membrane bound proteins possessing a pair of repeats 
each spanning two transmembrane helices connected by a loop. 
The PQ motif found on loop 2 is critical for the localization 
of cystinosin to lysosomes. However, the PQ motif appears 
not to be a general lysosome-targeting motif. It is thought 
likely to possess a more general function. Most probably this 
involves a glutamine residue. Family members are membrane 
transporters since two members, cystinosin and PQLC2, transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts 
the substrate-coupled H+ binding site underlying its H+ symport 
mechanism, suggesting that PQ-loop repeats have functional 
significance. It is thus likely that PQ-loop-containing proteins 
act as a family of membrane transporters. Some transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. Others transport lysine and or arginine 
across the lysosomal membrane in order to maintain the acidic 
homoeostasis.
Length=61

 Score = 58.7 bits (143),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 17/61 (28%), Positives = 31/61 (51%), Gaps = 0/61 (0%)

Query  26  YVSLLGYAGLAVEAILPLPQIVANHRTRSCKGFRVSVLAAWILGDVMKMSYFFCSKEVIP  85
             ++LGY  L +  +  LPQI+ N++ +S +G  +  L  W+LGD+  + Y   +     
Sbjct  1   LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  86  W  86
            
Sbjct  61  L  61



Lambda      K        H        a         alpha
   0.332    0.142    0.477    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 104392240


Query= TCONS_00037764

Length=194
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461220 pfam04193, PQ-loop, PQ loop repeat. Members of this fa...  56.4    8e-12


>CDD:461220 pfam04193, PQ-loop, PQ loop repeat.  Members of this family are 
all membrane bound proteins possessing a pair of repeats 
each spanning two transmembrane helices connected by a loop. 
The PQ motif found on loop 2 is critical for the localization 
of cystinosin to lysosomes. However, the PQ motif appears 
not to be a general lysosome-targeting motif. It is thought 
likely to possess a more general function. Most probably this 
involves a glutamine residue. Family members are membrane 
transporters since two members, cystinosin and PQLC2, transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts 
the substrate-coupled H+ binding site underlying its H+ symport 
mechanism, suggesting that PQ-loop repeats have functional 
significance. It is thus likely that PQ-loop-containing proteins 
act as a family of membrane transporters. Some transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. Others transport lysine and or arginine 
across the lysosomal membrane in order to maintain the acidic 
homoeostasis.
Length=61

 Score = 56.4 bits (137),  Expect = 8e-12, Method: Composition-based stats.
 Identities = 17/61 (28%), Positives = 31/61 (51%), Gaps = 0/61 (0%)

Query  110  YVSLLGYAGLAVEAILPLPQIVANHRTRSCKGFRVSVLAAWILGDVMKMSYFFCSKEVIP  169
              ++LGY  L +  +  LPQI+ N++ +S +G  +  L  W+LGD+  + Y   +     
Sbjct  1    LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  170  W  170
             
Sbjct  61   L  61



Lambda      K        H        a         alpha
   0.331    0.144    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 189370496


Query= TCONS_00037765

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461220 pfam04193, PQ-loop, PQ loop repeat. Members of this fa...  58.3    2e-12


>CDD:461220 pfam04193, PQ-loop, PQ loop repeat.  Members of this family are 
all membrane bound proteins possessing a pair of repeats 
each spanning two transmembrane helices connected by a loop. 
The PQ motif found on loop 2 is critical for the localization 
of cystinosin to lysosomes. However, the PQ motif appears 
not to be a general lysosome-targeting motif. It is thought 
likely to possess a more general function. Most probably this 
involves a glutamine residue. Family members are membrane 
transporters since two members, cystinosin and PQLC2, transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts 
the substrate-coupled H+ binding site underlying its H+ symport 
mechanism, suggesting that PQ-loop repeats have functional 
significance. It is thus likely that PQ-loop-containing proteins 
act as a family of membrane transporters. Some transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. Others transport lysine and or arginine 
across the lysosomal membrane in order to maintain the acidic 
homoeostasis.
Length=61

 Score = 58.3 bits (142),  Expect = 2e-12, Method: Composition-based stats.
 Identities = 17/61 (28%), Positives = 31/61 (51%), Gaps = 0/61 (0%)

Query  107  YVSLLGYAGLAVEAILPLPQIVANHRTRSCKGFRVSVLAAWILGDVMKMSYFFCSKEVIP  166
              ++LGY  L +  +  LPQI+ N++ +S +G  +  L  W+LGD+  + Y   +     
Sbjct  1    LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  167  W  167
             
Sbjct  61   L  61



Lambda      K        H        a         alpha
   0.329    0.141    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 221305288


Query= TCONS_00043241

Length=238


***** No hits found *****



Lambda      K        H        a         alpha
   0.330    0.143    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 254335928


Query= TCONS_00037766

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461220 pfam04193, PQ-loop, PQ loop repeat. Members of this fa...  59.1    9e-13


>CDD:461220 pfam04193, PQ-loop, PQ loop repeat.  Members of this family are 
all membrane bound proteins possessing a pair of repeats 
each spanning two transmembrane helices connected by a loop. 
The PQ motif found on loop 2 is critical for the localization 
of cystinosin to lysosomes. However, the PQ motif appears 
not to be a general lysosome-targeting motif. It is thought 
likely to possess a more general function. Most probably this 
involves a glutamine residue. Family members are membrane 
transporters since two members, cystinosin and PQLC2, transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts 
the substrate-coupled H+ binding site underlying its H+ symport 
mechanism, suggesting that PQ-loop repeats have functional 
significance. It is thus likely that PQ-loop-containing proteins 
act as a family of membrane transporters. Some transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. Others transport lysine and or arginine 
across the lysosomal membrane in order to maintain the acidic 
homoeostasis.
Length=61

 Score = 59.1 bits (144),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 17/61 (28%), Positives = 31/61 (51%), Gaps = 0/61 (0%)

Query  110  YVSLLGYAGLAVEAILPLPQIVANHRTRSCKGFRVSVLAAWILGDVMKMSYFFCSKEVIP  169
              ++LGY  L +  +  LPQI+ N++ +S +G  +  L  W+LGD+  + Y   +     
Sbjct  1    LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  170  W  170
             
Sbjct  61   L  61



Lambda      K        H        a         alpha
   0.329    0.142    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00043242

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461220 pfam04193, PQ-loop, PQ loop repeat. Members of this fa...  60.6    2e-13


>CDD:461220 pfam04193, PQ-loop, PQ loop repeat.  Members of this family are 
all membrane bound proteins possessing a pair of repeats 
each spanning two transmembrane helices connected by a loop. 
The PQ motif found on loop 2 is critical for the localization 
of cystinosin to lysosomes. However, the PQ motif appears 
not to be a general lysosome-targeting motif. It is thought 
likely to possess a more general function. Most probably this 
involves a glutamine residue. Family members are membrane 
transporters since two members, cystinosin and PQLC2, transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts 
the substrate-coupled H+ binding site underlying its H+ symport 
mechanism, suggesting that PQ-loop repeats have functional 
significance. It is thus likely that PQ-loop-containing proteins 
act as a family of membrane transporters. Some transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. Others transport lysine and or arginine 
across the lysosomal membrane in order to maintain the acidic 
homoeostasis.
Length=61

 Score = 60.6 bits (148),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 17/61 (28%), Positives = 31/61 (51%), Gaps = 0/61 (0%)

Query  80   YVSLLGYAGLAVEAILPLPQIVANHRTRSCKGFRVSVLAAWILGDVMKMSYFFCSKEVIP  139
              ++LGY  L +  +  LPQI+ N++ +S +G  +  L  W+LGD+  + Y   +     
Sbjct  1    LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  140  W  140
             
Sbjct  61   L  61



Lambda      K        H        a         alpha
   0.328    0.140    0.471    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 184298072


Query= TCONS_00043244

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461220 pfam04193, PQ-loop, PQ loop repeat. Members of this fa...  59.1    9e-13


>CDD:461220 pfam04193, PQ-loop, PQ loop repeat.  Members of this family are 
all membrane bound proteins possessing a pair of repeats 
each spanning two transmembrane helices connected by a loop. 
The PQ motif found on loop 2 is critical for the localization 
of cystinosin to lysosomes. However, the PQ motif appears 
not to be a general lysosome-targeting motif. It is thought 
likely to possess a more general function. Most probably this 
involves a glutamine residue. Family members are membrane 
transporters since two members, cystinosin and PQLC2, transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts 
the substrate-coupled H+ binding site underlying its H+ symport 
mechanism, suggesting that PQ-loop repeats have functional 
significance. It is thus likely that PQ-loop-containing proteins 
act as a family of membrane transporters. Some transport 
cystine and cationic amino acids, respectively, across 
the lysosomal membrane. Others transport lysine and or arginine 
across the lysosomal membrane in order to maintain the acidic 
homoeostasis.
Length=61

 Score = 59.1 bits (144),  Expect = 9e-13, Method: Composition-based stats.
 Identities = 17/61 (28%), Positives = 31/61 (51%), Gaps = 0/61 (0%)

Query  110  YVSLLGYAGLAVEAILPLPQIVANHRTRSCKGFRVSVLAAWILGDVMKMSYFFCSKEVIP  169
              ++LGY  L +  +  LPQI+ N++ +S +G  +  L  W+LGD+  + Y   +     
Sbjct  1    LSNVLGYISLVLWLVSYLPQIIKNYKRKSTEGLSILFLLLWLLGDIFYLLYLILNGFPPS  60

Query  170  W  170
             
Sbjct  61   L  61



Lambda      K        H        a         alpha
   0.329    0.142    0.475    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 226259884


Query= TCONS_00043245

Length=234


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 247729800


Query= TCONS_00037767

Length=254


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 275790086


Query= TCONS_00043247

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00037768

Length=151


***** No hits found *****



Lambda      K        H        a         alpha
   0.317    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00037770

Length=204


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 202211570


Query= TCONS_00043248

Length=79


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.127    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82192076


Query= TCONS_00037771

Length=323


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.135    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 375857848


Query= TCONS_00037772

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00043250

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00037773

Length=278


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.136    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309553152


Query= TCONS_00037775

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00037774

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00037777

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00037776

Length=159


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.135    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136676636


Query= TCONS_00037778

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425828 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18   68.3    2e-13


>CDD:425828 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18.  
Length=311

 Score = 68.3 bits (167),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 97/303 (32%), Gaps = 85/303 (28%)

Query  100  VNFSNAN---DNCTLFKDTNLLKCPQIGEDITTCQKKGKTILLSIGGATYSEGGFS----  152
            + ++ AN    + TLF     L   +  + +   +  G  +LLSIGG T S  GFS    
Sbjct  26   IIYAFANIDGSDGTLFIGDWDLGNFEQLKKLKKQKNPGVKVLLSIGGWTDS-TGFSLMAS  84

Query  153  SEPAAKAGAELVWQTFGPPSINATAHRPFGNASVDGFDFDFEASVSNVAP------FANR  206
            +  + K  A+ +              R +G    DG D D+E    N             
Sbjct  85   NPASRKKFADSIVSFL----------RKYG---FDGIDIDWEYPGGNPEDKENYDLLLRE  131

Query  207  LRE-LMDADHRRDYFLTAAPQCPYPDAADKDILNGPV-SVDAVFVQFY------NNWCGL  258
            LR  L +A   + Y L+AA    YPD      L      +D + V  Y      +N  G 
Sbjct  132  LRAALDEAKGGKKYLLSAAVPASYPDLDKGYDLPKIAKYLDFINVMTYDFHGSWDNVTGH  191

Query  259  NSFEAGESKQNSFNFEVWDNWAKTVSLNKKAKVFLGVPA------------NTGAAGS-G  305
            ++   G    N  ++ V     + V  +   K+ LGVP             NT   G   
Sbjct  192  HAPLYGGGSYNV-DYAVKYYLKQGVPAS---KLVLGVPFYGRSWTLVNGSGNTWEDGVLA  247

Query  306  YVPVDTLKPIIEYSKKF---------------------------------SSFGGVMMWD  332
            Y  +  L      +  +                                    GGVM+W 
Sbjct  248  YKEICNLLKDNGATVVWDDVAKAPYVYDGDQFITYDDPRSIATKVDYVKAKGLGGVMIWS  307

Query  333  VTQ  335
            +  
Sbjct  308  LDA  310



Lambda      K        H        a         alpha
   0.319    0.134    0.413    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 442007380


Query= TCONS_00037779

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425828 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18   67.1    2e-13


>CDD:425828 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18.  
Length=311

 Score = 67.1 bits (164),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 85/274 (31%), Gaps = 82/274 (30%)

Query  27   DITTCQKKGKTILLSIGGATYSEGGFS----SEPAAKAGAELVWQTFGPPSINATAHRPF  82
             +   +  G  +LLSIGG T S  GFS    +  + K  A+ +              R +
Sbjct  55   KLKKQKNPGVKVLLSIGGWTDS-TGFSLMASNPASRKKFADSIVSFL----------RKY  103

Query  83   GNASVDGFDFDFEASVSNVAP------FANRLRE-LMDADHRRDYFLTAAPQCPYPDAAD  135
            G    DG D D+E    N             LR  L +A   + Y L+AA    YPD   
Sbjct  104  G---FDGIDIDWEYPGGNPEDKENYDLLLRELRAALDEAKGGKKYLLSAAVPASYPDLDK  160

Query  136  KDILNGPV-SVDAVFVQFY------NNWCGLNSFEAGESKQNSFNFEVWDNWAKTVSLNK  188
               L      +D + V  Y      +N  G ++   G    N  ++ V     + V  + 
Sbjct  161  GYDLPKIAKYLDFINVMTYDFHGSWDNVTGHHAPLYGGGSYNV-DYAVKYYLKQGVPAS-  218

Query  189  KAKVFLGVPA------------NTGAAGS-GYVPVDTLKPIIEYSKKF------------  223
              K+ LGVP             NT   G   Y  +  L      +  +            
Sbjct  219  --KLVLGVPFYGRSWTLVNGSGNTWEDGVLAYKEICNLLKDNGATVVWDDVAKAPYVYDG  276

Query  224  ---------------------SSFGGVMMWDVTQ  236
                                    GGVM+W +  
Sbjct  277  DQFITYDDPRSIATKVDYVKAKGLGGVMIWSLDA  310



Lambda      K        H        a         alpha
   0.319    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00037780

Length=41


***** No hits found *****



Lambda      K        H        a         alpha
   0.326    0.137    0.482    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81707184


Query= TCONS_00037781

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:425828 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18   67.1    2e-13


>CDD:425828 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18.  
Length=311

 Score = 67.1 bits (164),  Expect = 2e-13, Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 85/274 (31%), Gaps = 82/274 (30%)

Query  27   DITTCQKKGKTILLSIGGATYSEGGFS----SEPAAKAGAELVWQTFGPPSINATAHRPF  82
             +   +  G  +LLSIGG T S  GFS    +  + K  A+ +              R +
Sbjct  55   KLKKQKNPGVKVLLSIGGWTDS-TGFSLMASNPASRKKFADSIVSFL----------RKY  103

Query  83   GNASVDGFDFDFEASVSNVAP------FANRLRE-LMDADHRRDYFLTAAPQCPYPDAAD  135
            G    DG D D+E    N             LR  L +A   + Y L+AA    YPD   
Sbjct  104  G---FDGIDIDWEYPGGNPEDKENYDLLLRELRAALDEAKGGKKYLLSAAVPASYPDLDK  160

Query  136  KDILNGPV-SVDAVFVQFY------NNWCGLNSFEAGESKQNSFNFEVWDNWAKTVSLNK  188
               L      +D + V  Y      +N  G ++   G    N  ++ V     + V  + 
Sbjct  161  GYDLPKIAKYLDFINVMTYDFHGSWDNVTGHHAPLYGGGSYNV-DYAVKYYLKQGVPAS-  218

Query  189  KAKVFLGVPA------------NTGAAGS-GYVPVDTLKPIIEYSKKF------------  223
              K+ LGVP             NT   G   Y  +  L      +  +            
Sbjct  219  --KLVLGVPFYGRSWTLVNGSGNTWEDGVLAYKEICNLLKDNGATVVWDDVAKAPYVYDG  276

Query  224  ---------------------SSFGGVMMWDVTQ  236
                                    GGVM+W +  
Sbjct  277  DQFITYDDPRSIATKVDYVKAKGLGGVMIWSLDA  310



Lambda      K        H        a         alpha
   0.319    0.134    0.423    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 296655104


Query= TCONS_00037782

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  96.2    4e-23


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 96.2 bits (240),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 68/325 (21%), Positives = 120/325 (37%), Gaps = 42/325 (13%)

Query  27   YEVMIIGGGPSGLSAASGLSRVRRKNIVFDSGEYR--NGPTRNMHDVIGNDGAVPS----  80
            Y+V++IGGGP+GL+AA  L+++  K  + +        G    +   +      P     
Sbjct  1    YDVVVIGGGPAGLAAALTLAQLGGKVTLIEDEGTCPYGGCV--LSKALLGAAEAPEIASL  58

Query  81   --DFRALARNQISKYNQTTWVNEKVDSVRVITDEERNTTYFRASVAGETYTARKLILGTG  138
              D        + K N    V    + V +    ++          GET T  +L++ TG
Sbjct  59   WADLYKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEELVDGDGETITYDRLVIATG  118

Query  139  MKDILPETPGLDEAWGKGVYWCPWCDGWEHRDQPFGILGSLVDVVGS---VLEVYTLNTD  195
             +  LP  PG++   G  V      +    +  P      +V VVG     +E+      
Sbjct  119  ARPRLPPIPGVELNVGFLVRTLDSAEALRLKLLP----KRVV-VVGGGYIGVELAAALAK  173

Query  196  IIAFV-----NGTQTPKAEAKLAEKYPNWKKQLEAYNI-VLNNETVKSIERVQNGEDVYD  249
            +   V             + +++      +K LE   + V    +VK I    +G +V  
Sbjct  174  LGKEVTLIEALDRLLRAFDEEISAAL---EKALEKNGVEVRLGTSVKEIIGDGDGVEVIL  230

Query  250  DQGRQFDIFRVNLADGSSVTRNAFITNFPSEQRSSIPKELGLKM-KDNKIDTNIDGMRTS  308
              G + D   V +A G                     +  GL++ +   I  + + +RTS
Sbjct  231  KDGTEIDADLVVVAIGRRPNTELL-------------EAAGLELDERGGIVVD-EYLRTS  276

Query  309  LPGVFAVGDANSDGSTNVPHAMFSG  333
            +PG++A GD    G     +A+  G
Sbjct  277  VPGIYAAGDCRVGGPELAQNAVAQG  301



Lambda      K        H        a         alpha
   0.315    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 453018240


Query= TCONS_00037784

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  96.2    4e-23


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 96.2 bits (240),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 68/325 (21%), Positives = 120/325 (37%), Gaps = 42/325 (13%)

Query  27   YEVMIIGGGPSGLSAASGLSRVRRKNIVFDSGEYR--NGPTRNMHDVIGNDGAVPS----  80
            Y+V++IGGGP+GL+AA  L+++  K  + +        G    +   +      P     
Sbjct  1    YDVVVIGGGPAGLAAALTLAQLGGKVTLIEDEGTCPYGGCV--LSKALLGAAEAPEIASL  58

Query  81   --DFRALARNQISKYNQTTWVNEKVDSVRVITDEERNTTYFRASVAGETYTARKLILGTG  138
              D        + K N    V    + V +    ++          GET T  +L++ TG
Sbjct  59   WADLYKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEELVDGDGETITYDRLVIATG  118

Query  139  MKDILPETPGLDEAWGKGVYWCPWCDGWEHRDQPFGILGSLVDVVGS---VLEVYTLNTD  195
             +  LP  PG++   G  V      +    +  P      +V VVG     +E+      
Sbjct  119  ARPRLPPIPGVELNVGFLVRTLDSAEALRLKLLP----KRVV-VVGGGYIGVELAAALAK  173

Query  196  IIAFV-----NGTQTPKAEAKLAEKYPNWKKQLEAYNI-VLNNETVKSIERVQNGEDVYD  249
            +   V             + +++      +K LE   + V    +VK I    +G +V  
Sbjct  174  LGKEVTLIEALDRLLRAFDEEISAAL---EKALEKNGVEVRLGTSVKEIIGDGDGVEVIL  230

Query  250  DQGRQFDIFRVNLADGSSVTRNAFITNFPSEQRSSIPKELGLKM-KDNKIDTNIDGMRTS  308
              G + D   V +A G                     +  GL++ +   I  + + +RTS
Sbjct  231  KDGTEIDADLVVVAIGRRPNTELL-------------EAAGLELDERGGIVVD-EYLRTS  276

Query  309  LPGVFAVGDANSDGSTNVPHAMFSG  333
            +PG++A GD    G     +A+  G
Sbjct  277  VPGIYAAGDCRVGGPELAQNAVAQG  301



Lambda      K        H        a         alpha
   0.315    0.132    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 448299300


Query= TCONS_00037785

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide...  96.2    5e-23


>CDD:400379 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. 
 This family includes both class I and class II oxidoreductases 
and also NADH oxidases and peroxidases. This domain 
is actually a small NADH binding domain within a larger 
FAD binding domain.
Length=301

 Score = 96.2 bits (240),  Expect = 5e-23, Method: Composition-based stats.
 Identities = 68/325 (21%), Positives = 120/325 (37%), Gaps = 42/325 (13%)

Query  27   YEVMIIGGGPSGLSAASGLSRVRRKNIVFDSGEYR--NGPTRNMHDVIGNDGAVPS----  80
            Y+V++IGGGP+GL+AA  L+++  K  + +        G    +   +      P     
Sbjct  1    YDVVVIGGGPAGLAAALTLAQLGGKVTLIEDEGTCPYGGCV--LSKALLGAAEAPEIASL  58

Query  81   --DFRALARNQISKYNQTTWVNEKVDSVRVITDEERNTTYFRASVAGETYTARKLILGTG  138
              D        + K N    V    + V +    ++          GET T  +L++ TG
Sbjct  59   WADLYKRKEEVVKKLNNGIEVLLGTEVVSIDPGAKKVVLEELVDGDGETITYDRLVIATG  118

Query  139  MKDILPETPGLDEAWGKGVYWCPWCDGWEHRDQPFGILGSLVDVVGS---VLEVYTLNTD  195
             +  LP  PG++   G  V      +    +  P      +V VVG     +E+      
Sbjct  119  ARPRLPPIPGVELNVGFLVRTLDSAEALRLKLLP----KRVV-VVGGGYIGVELAAALAK  173

Query  196  IIAFV-----NGTQTPKAEAKLAEKYPNWKKQLEAYNI-VLNNETVKSIERVQNGEDVYD  249
            +   V             + +++      +K LE   + V    +VK I    +G +V  
Sbjct  174  LGKEVTLIEALDRLLRAFDEEISAAL---EKALEKNGVEVRLGTSVKEIIGDGDGVEVIL  230

Query  250  DQGRQFDIFRVNLADGSSVTRNAFITNFPSEQRSSIPKELGLKM-KDNKIDTNIDGMRTS  308
              G + D   V +A G                     +  GL++ +   I  + + +RTS
Sbjct  231  KDGTEIDADLVVVAIGRRPNTELL-------------EAAGLELDERGGIVVD-EYLRTS  276

Query  309  LPGVFAVGDANSDGSTNVPHAMFSG  333
            +PG++A GD    G     +A+  G
Sbjct  277  VPGIYAAGDCRVGGPELAQNAVAQG  301



Lambda      K        H        a         alpha
   0.315    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0832    0.140     1.90     42.6     43.6 

Effective search space used: 461342574


Query= TCONS_00037786

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:431392 pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. Th...  246     1e-83


>CDD:431392 pfam10609, ParA, NUBPL iron-transfer P-loop NTPase.  This family 
contains ATPases involved in plasmid partitioning. It also 
contains the cytosolic Fe-S cluster assembling factor NBP35 
which is required for biogenesis and export of both ribosomal 
subunits.
Length=246

 Score = 246 bits (632),  Expect = 1e-83, Method: Composition-based stats.
 Identities = 87/175 (50%), Positives = 108/175 (62%), Gaps = 18/175 (10%)

Query  1    MSLGFLLRDRGDAVIWRGPKKTAMIRQFLSDVSWGPTDYLLVDTPPGTSDEHIALAEQLL  60
            MS+GFLL D  DAVIWRGP K+  I+QFL+DV WG  DYL++D PPGT DE + LA+ L 
Sbjct  76   MSIGFLLPDEDDAVIWRGPMKSGAIKQFLTDVDWGELDYLIIDLPPGTGDEQLTLAQLL-  134

Query  61   TLASTDPAVASSMGRPRLAGAVLVTTPQAVATSDVRKEANFCVKTQIPALGVIENMSGYT  120
                             L GAV+VTTPQ VA  DVRK  +   K  +P LGV+ENMS + 
Sbjct  135  ----------------PLTGAVIVTTPQDVALLDVRKAIDMFKKVNVPVLGVVENMSYFV  178

Query  121  CPCCGEVSNLFSSGGGKVMAEELGIRFLGTVPVDVKFGELV-EGKMVVDSDSDEE  174
            CP CGE + +F  GGG+ +AEELG+ FLG +P+D    E   EGK  V +D D  
Sbjct  179  CPHCGEETYIFGKGGGEKLAEELGVPFLGEIPLDPDIREAGDEGKPFVLADPDSP  233



Lambda      K        H        a         alpha
   0.315    0.133    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 229562948


Query= TCONS_00037787

Length=185
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459905 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e fa...  134     2e-40


>CDD:459905 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family.  
This family includes prokaryotic L1 and eukaryotic L10.
Length=197

 Score = 134 bits (339),  Expect = 2e-40, Method: Composition-based stats.
 Identities = 61/170 (36%), Positives = 92/170 (54%), Gaps = 15/170 (9%)

Query  2    LRFPHSVQTESRICVVCPPGTRHEKEARAAGAVLVGEQDV------FDAVKAGKIEFDRL  55
            +  PH      R+CV         +EA+ AGA +VG +D+      F+A +    +FD  
Sbjct  35   IVLPHGTGKTVRVCVFAKD--PQAEEAKEAGADVVGGEDLKEKIKNFEAKRKLAKDFDLF  92

Query  56   ICHPDSLDALNKAGLGRILGPRGLMPSIKTGTVVEDVAARVEMLRGGTVY--RERDAVIR  113
            +  PD +  L K  LG+ILGPRG MP+ K GTV +DVA  VE  + GTV    ++   I 
Sbjct  93   LADPDIMPLLGKL-LGKILGPRGKMPNPKKGTVTKDVAKAVEEAKSGTVEFRVDKGGCIH  151

Query  114  LPIGQLAFSPEQLRDNLRATIEQVKKDAASLNDRIVKEIYEVVLSSTNGP  163
            + +G+++F+PEQL +N+ A I+ + K       + +K IY   L +T GP
Sbjct  152  VKVGKVSFTPEQLAENIEAVIDALVKKKPK-GGQNIKSIY---LKTTMGP  197



Lambda      K        H        a         alpha
   0.318    0.136    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174153224


Query= TCONS_00043251

Length=100
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459905 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e fa...  68.7    2e-16


>CDD:459905 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family.  
This family includes prokaryotic L1 and eukaryotic L10.
Length=197

 Score = 68.7 bits (169),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 6/86 (7%)

Query  1    MPSIKTGTVVEDVAARVEMLRGGTVY--RERDAVIRLPIGQLAFSPEQLRDNLRATIEQV  58
            MP+ K GTV +DVA  VE  + GTV    ++   I + +G+++F+PEQL +N+ A I+ +
Sbjct  116  MPNPKKGTVTKDVAKAVEEAKSGTVEFRVDKGGCIHVKVGKVSFTPEQLAENIEAVIDAL  175

Query  59   KKDAASLNDRIVKEIYEVVLSSTNGP  84
             K       + +K IY   L +T GP
Sbjct  176  VKKKPK-GGQNIKSIY---LKTTMGP  197



Lambda      K        H        a         alpha
   0.314    0.132    0.358    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82025034


Query= TCONS_00037788

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:459905 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e fa...  147     4e-44


>CDD:459905 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family.  
This family includes prokaryotic L1 and eukaryotic L10.
Length=197

 Score = 147 bits (373),  Expect = 4e-44, Method: Composition-based stats.
 Identities = 64/191 (34%), Positives = 99/191 (52%), Gaps = 18/191 (9%)

Query  102  EIHIRLKTK---RDGPVIRNMLRFPHSVQTESRICVVCPPGTRHEKEARAAGAVLVGEQD  158
            E+ + L      +    +R  +  PH      R+CV         +EA+ AGA +VG +D
Sbjct  14   ELALNLTGVDPRKADQRVRGTIVLPHGTGKTVRVCVFAKD--PQAEEAKEAGADVVGGED  71

Query  159  V------FDAVKAGKIEFDRLICHPDSLDALNKAGLGRILGPRGLMPSIKTGTVVEDVAA  212
            +      F+A +    +FD  +  PD +  L K  LG+ILGPRG MP+ K GTV +DVA 
Sbjct  72   LKEKIKNFEAKRKLAKDFDLFLADPDIMPLLGKL-LGKILGPRGKMPNPKKGTVTKDVAK  130

Query  213  RVEMLRGGTVY--RERDAVIRLPIGQLAFSPEQLRDNLRATIEQVKKDAASLNDRIVKEI  270
             VE  + GTV    ++   I + +G+++F+PEQL +N+ A I+ + K       + +K I
Sbjct  131  AVEEAKSGTVEFRVDKGGCIHVKVGKVSFTPEQLAENIEAVIDALVKKKPK-GGQNIKSI  189

Query  271  YEVVLSSTNGP  281
            Y   L +T GP
Sbjct  190  Y---LKTTMGP  197



Lambda      K        H        a         alpha
   0.318    0.134    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344005488


Query= TCONS_00043252

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400499 pfam08219, TOM13, Outer membrane protein TOM13. The TO...  136     1e-43


>CDD:400499 pfam08219, TOM13, Outer membrane protein TOM13.  The TOM13 family 
of proteins are mitochondrial outer membrane proteins that 
mediate the assembly of beta-barrel proteins.
Length=82

 Score = 136 bits (344),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 56/82 (68%), Positives = 67/82 (82%), Gaps = 4/82 (5%)

Query  21  SDSEIYSANHE----VSSPMSASSSPLILYKPPSIWGILRGAAINLILPFVNGLMLGFGE  76
           SDSE YS+        SS  S+SSSP+I+Y+PP++W +LRGAAINL+LPF+NGLMLGFGE
Sbjct  1   SDSEQYSSLIANEELPSSSPSSSSSPVIIYQPPTVWSLLRGAAINLVLPFINGLMLGFGE  60

Query  77  LFAHEAAFRLGWSNTKIFPTYR  98
           LFAHEAAFRLGWS TK+FP  R
Sbjct  61  LFAHEAAFRLGWSGTKVFPESR  82



Lambda      K        H        a         alpha
   0.317    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00037791

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400499 pfam08219, TOM13, Outer membrane protein TOM13. The TO...  125     4e-40


>CDD:400499 pfam08219, TOM13, Outer membrane protein TOM13.  The TOM13 family 
of proteins are mitochondrial outer membrane proteins that 
mediate the assembly of beta-barrel proteins.
Length=82

 Score = 125 bits (317),  Expect = 4e-40, Method: Composition-based stats.
 Identities = 54/77 (70%), Positives = 64/77 (83%), Gaps = 4/77 (5%)

Query  21  SDSEIYSANHE----VSSPMSASSSPLILYKPPSIWGILRGAAINLILPFVNGLMLGFGE  76
           SDSE YS+        SS  S+SSSP+I+Y+PP++W +LRGAAINL+LPF+NGLMLGFGE
Sbjct  1   SDSEQYSSLIANEELPSSSPSSSSSPVIIYQPPTVWSLLRGAAINLVLPFINGLMLGFGE  60

Query  77  LFAHEAAFRLGWSNTKV  93
           LFAHEAAFRLGWS TKV
Sbjct  61  LFAHEAAFRLGWSGTKV  77



Lambda      K        H        a         alpha
   0.317    0.132    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82790916


Query= TCONS_00037790

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400499 pfam08219, TOM13, Outer membrane protein TOM13. The TO...  136     1e-43


>CDD:400499 pfam08219, TOM13, Outer membrane protein TOM13.  The TOM13 family 
of proteins are mitochondrial outer membrane proteins that 
mediate the assembly of beta-barrel proteins.
Length=82

 Score = 136 bits (344),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 56/82 (68%), Positives = 67/82 (82%), Gaps = 4/82 (5%)

Query  21  SDSEIYSANHE----VSSPMSASSSPLILYKPPSIWGILRGAAINLILPFVNGLMLGFGE  76
           SDSE YS+        SS  S+SSSP+I+Y+PP++W +LRGAAINL+LPF+NGLMLGFGE
Sbjct  1   SDSEQYSSLIANEELPSSSPSSSSSPVIIYQPPTVWSLLRGAAINLVLPFINGLMLGFGE  60

Query  77  LFAHEAAFRLGWSNTKIFPTYR  98
           LFAHEAAFRLGWS TK+FP  R
Sbjct  61  LFAHEAAFRLGWSGTKVFPESR  82



Lambda      K        H        a         alpha
   0.317    0.134    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00043253

Length=130
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400499 pfam08219, TOM13, Outer membrane protein TOM13. The TO...  133     1e-42


>CDD:400499 pfam08219, TOM13, Outer membrane protein TOM13.  The TOM13 family 
of proteins are mitochondrial outer membrane proteins that 
mediate the assembly of beta-barrel proteins.
Length=82

 Score = 133 bits (337),  Expect = 1e-42, Method: Composition-based stats.
 Identities = 56/82 (68%), Positives = 66/82 (80%), Gaps = 4/82 (5%)

Query  21  SDSEIYSANHE----VSSPMSASSSPLILYKPPSIWGILRGAAINLILPFVNGLMLGFGE  76
           SDSE YS+        SS  S+SSSP+I+Y+PP++W +LRGAAINL+LPF+NGLMLGFGE
Sbjct  1   SDSEQYSSLIANEELPSSSPSSSSSPVIIYQPPTVWSLLRGAAINLVLPFINGLMLGFGE  60

Query  77  LFAHEAAFRLGWSNTKVLPTYR  98
           LFAHEAAFRLGWS TKV P  R
Sbjct  61  LFAHEAAFRLGWSGTKVFPESR  82



Lambda      K        H        a         alpha
   0.316    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94816894


Query= TCONS_00043254

Length=95
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400499 pfam08219, TOM13, Outer membrane protein TOM13. The TO...  134     1e-43


>CDD:400499 pfam08219, TOM13, Outer membrane protein TOM13.  The TOM13 family 
of proteins are mitochondrial outer membrane proteins that 
mediate the assembly of beta-barrel proteins.
Length=82

 Score = 134 bits (339),  Expect = 1e-43, Method: Composition-based stats.
 Identities = 48/62 (77%), Positives = 58/62 (94%), Gaps = 0/62 (0%)

Query  2   SASSSPLILYKPPSIWGILRGAAINLILPFVNGLMLGFGELFAHEAAFRLGWSNTKIFPT  61
           S+SSSP+I+Y+PP++W +LRGAAINL+LPF+NGLMLGFGELFAHEAAFRLGWS TK+FP 
Sbjct  21  SSSSSPVIIYQPPTVWSLLRGAAINLVLPFINGLMLGFGELFAHEAAFRLGWSGTKVFPE  80

Query  62  YR  63
            R
Sbjct  81  SR  82



Lambda      K        H        a         alpha
   0.322    0.139    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82906804


Query= TCONS_00037792

Length=32


***** No hits found *****



Lambda      K        H        a         alpha
   0.323    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82765696


Query= TCONS_00037794

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460443 pfam02096, 60KD_IMP, 60Kd inner membrane protein           61.3    6e-12


>CDD:460443 pfam02096, 60KD_IMP, 60Kd inner membrane protein.  
Length=187

 Score = 61.3 bits (150),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 71/146 (49%), Gaps = 18/146 (12%)

Query  147  WWASVVGTGILLRLALLYPTLGAVDTSTKMLNIKPVTEPLRQQMIMRGKEGNQIEMLKLR  206
            +  +++   IL++L L   T     +  KM  ++P  + ++++     K+  Q    KL+
Sbjct  1    YGLAIILLTILIKLILFPLTYKQYKSMAKMQELQPEMKEIQEKY----KDDRQ----KLQ  52

Query  207  AEIQKLHQEQGIVAWKSFIPML-QIPFGFGCYRVVKGMAALPVPGLTLESVAWLKDLTVA  265
             E+ KL++++G+      +PML Q+P     YRV++    L      L    W+ DL+  
Sbjct  53   QEMMKLYKKEGVNPLGGCLPMLIQMPIFIALYRVLRNSIELRHAPFFL----WIADLSAP  108

Query  266  DP-----YFILPAASALFMYLSIRVS  286
            DP     Y+ILP    + M+L  +++
Sbjct  109  DPISILHYYILPILMGVTMFLQQKLT  134



Lambda      K        H        a         alpha
   0.321    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00043255

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460443 pfam02096, 60KD_IMP, 60Kd inner membrane protein           60.6    7e-12


>CDD:460443 pfam02096, 60KD_IMP, 60Kd inner membrane protein.  
Length=187

 Score = 60.6 bits (148),  Expect = 7e-12, Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 71/146 (49%), Gaps = 18/146 (12%)

Query  80   WWASVVGTGILLRLALLYPTLGAVDTSTKMLNIKPVTEPLRQQMIMRGKEGNQIEMLKLR  139
            +  +++   IL++L L   T     +  KM  ++P  + ++++     K+  Q    KL+
Sbjct  1    YGLAIILLTILIKLILFPLTYKQYKSMAKMQELQPEMKEIQEKY----KDDRQ----KLQ  52

Query  140  AEIQKLHQEQGIVAWKSFIPML-QIPFGFGCYRVVKGMAALPVPGLTLESVAWLKDLTVA  198
             E+ KL++++G+      +PML Q+P     YRV++    L      L    W+ DL+  
Sbjct  53   QEMMKLYKKEGVNPLGGCLPMLIQMPIFIALYRVLRNSIELRHAPFFL----WIADLSAP  108

Query  199  DP-----YFILPAASALFMYLSIRVS  219
            DP     Y+ILP    + M+L  +++
Sbjct  109  DPISILHYYILPILMGVTMFLQQKLT  134



Lambda      K        H        a         alpha
   0.322    0.137    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 262734934


Query= TCONS_00043256

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460443 pfam02096, 60KD_IMP, 60Kd inner membrane protein           97.5    5e-24


>CDD:460443 pfam02096, 60KD_IMP, 60Kd inner membrane protein.  
Length=187

 Score = 97.5 bits (244),  Expect = 5e-24, Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 95/200 (48%), Gaps = 21/200 (11%)

Query  147  WWASVVGTGILLRLALLYPTLGAVDTSTKMLNIKPVTEPLRQQMIMRGKEGNQIEMLKLR  206
            +  +++   IL++L L   T     +  KM  ++P  + ++++     K+  Q    KL+
Sbjct  1    YGLAIILLTILIKLILFPLTYKQYKSMAKMQELQPEMKEIQEKY----KDDRQ----KLQ  52

Query  207  AEIQKLHQEQGIVAWKSFIPML-QIPFGFGCYRVVKGMAALPVPGLTLESVAWLKDLTVA  265
             E+ KL++++G+      +PML Q+P     YRV++    L      L    W+ DL+  
Sbjct  53   QEMMKLYKKEGVNPLGGCLPMLIQMPIFIALYRVLRNSIELRHAPFFL----WIADLSAP  108

Query  266  DP-----YFILPAASALFMYLSIRKGGENGVNQLQGTALGRLLMFGLPALSFLFMAFFPS  320
            DP     Y+ILP    + M+L  +        Q Q   +  ++++ +P +   F   FP+
Sbjct  109  DPISILHYYILPILMGVTMFLQQKL---TPAPQDQPPQMKMMMLYFMPLMFLFFFLNFPA  165

Query  321  ALQLYFVTTGLFGLGQAYLL  340
             L LY+V + L  +GQ  ++
Sbjct  166  GLVLYWVVSNLLSIGQQLII  185



Lambda      K        H        a         alpha
   0.318    0.134    0.390    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 684448024


Query= TCONS_00043257

Length=503
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460443 pfam02096, 60KD_IMP, 60Kd inner membrane protein           97.9    2e-24


>CDD:460443 pfam02096, 60KD_IMP, 60Kd inner membrane protein.  
Length=187

 Score = 97.9 bits (245),  Expect = 2e-24, Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 95/200 (48%), Gaps = 21/200 (11%)

Query  147  WWASVVGTGILLRLALLYPTLGAVDTSTKMLNIKPVTEPLRQQMIMRGKEGNQIEMLKLR  206
            +  +++   IL++L L   T     +  KM  ++P  + ++++     K+  Q    KL+
Sbjct  1    YGLAIILLTILIKLILFPLTYKQYKSMAKMQELQPEMKEIQEKY----KDDRQ----KLQ  52

Query  207  AEIQKLHQEQGIVAWKSFIPML-QIPFGFGCYRVVKGMAALPVPGLTLESVAWLKDLTVA  265
             E+ KL++++G+      +PML Q+P     YRV++    L      L    W+ DL+  
Sbjct  53   QEMMKLYKKEGVNPLGGCLPMLIQMPIFIALYRVLRNSIELRHAPFFL----WIADLSAP  108

Query  266  DP-----YFILPAASALFMYLSIRKGGENGVNQLQGTALGRLLMFGLPALSFLFMAFFPS  320
            DP     Y+ILP    + M+L  +        Q Q   +  ++++ +P +   F   FP+
Sbjct  109  DPISILHYYILPILMGVTMFLQQKL---TPAPQDQPPQMKMMMLYFMPLMFLFFFLNFPA  165

Query  321  ALQLYFVTTGLFGLGQAYLL  340
             L LY+V + L  +GQ  ++
Sbjct  166  GLVLYWVVSNLLSIGQQLII  185



Lambda      K        H        a         alpha
   0.318    0.134    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 623795192


Query= TCONS_00037795

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:460443 pfam02096, 60KD_IMP, 60Kd inner membrane protein           61.3    6e-12


>CDD:460443 pfam02096, 60KD_IMP, 60Kd inner membrane protein.  
Length=187

 Score = 61.3 bits (150),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 71/146 (49%), Gaps = 18/146 (12%)

Query  147  WWASVVGTGILLRLALLYPTLGAVDTSTKMLNIKPVTEPLRQQMIMRGKEGNQIEMLKLR  206
            +  +++   IL++L L   T     +  KM  ++P  + ++++     K+  Q    KL+
Sbjct  1    YGLAIILLTILIKLILFPLTYKQYKSMAKMQELQPEMKEIQEKY----KDDRQ----KLQ  52

Query  207  AEIQKLHQEQGIVAWKSFIPML-QIPFGFGCYRVVKGMAALPVPGLTLESVAWLKDLTVA  265
             E+ KL++++G+      +PML Q+P     YRV++    L      L    W+ DL+  
Sbjct  53   QEMMKLYKKEGVNPLGGCLPMLIQMPIFIALYRVLRNSIELRHAPFFL----WIADLSAP  108

Query  266  DP-----YFILPAASALFMYLSIRVS  286
            DP     Y+ILP    + M+L  +++
Sbjct  109  DPISILHYYILPILMGVTMFLQQKLT  134



Lambda      K        H        a         alpha
   0.321    0.136    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 359931668


Query= TCONS_00037799

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00037796

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00037797

Length=146


***** No hits found *****



Lambda      K        H        a         alpha
   0.319    0.133    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117231374


Query= TCONS_00037798

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:428086 pfam04719, TAFII28, hTAFII28-like protein conserved re...  91.4    1e-24


>CDD:428086 pfam04719, TAFII28, hTAFII28-like protein conserved region.  
The general transcription factor, TFIID, consists of the TATA-binding 
protein (TBP) associated with a series of TBP-associated 
factors (TAFs) that together participate in the assembly 
of the transcription preinitiation complex. The conserved 
region is found at the C-terminal of most member proteins. 
The crystal structure of hTAFII28 with hTAFII18 shows that 
this region is involved in the binding of these two subunits. 
The conserved region contains four alpha helices and three 
loops arranged as in histone H3.
Length=86

 Score = 91.4 bits (228),  Expect = 1e-24, Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 0/69 (0%)

Query  11  LLVDAFNPIQSERYDLFKRAKLRKETLRRIVNHALSQSVPASVVTTINGFTKVFAGEIIE  70
           LL+  F+  Q +RY++F+R+   K  +++++N  L QSV  +V   + G  KVF GEI+E
Sbjct  1   LLLSNFSEEQLDRYEVFRRSSFNKAVIKKLINSVLGQSVSQNVAIAVAGIAKVFVGEIVE  60

Query  71  KARTVQAEW  79
           +AR VQ EW
Sbjct  61  EARDVQEEW  69



Lambda      K        H        a         alpha
   0.312    0.127    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 255987460


Query= TCONS_00037801

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461504 pfam04979, IPP-2, Protein phosphatase inhibitor 2 (IPP...  76.7    1e-18


>CDD:461504 pfam04979, IPP-2, Protein phosphatase inhibitor 2 (IPP-2).  Protein 
phosphotase inhibitor 2 (IPP-2) is a phosphoprotein conserved 
among all eukaryotes, and it appears in both the nucleus 
and cytoplasm of tissue culture cells.
Length=130

 Score = 76.7 bits (189),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 43/168 (26%), Positives = 64/168 (38%), Gaps = 53/168 (32%)

Query  52   LKWDEANL---YLTEQEKTAKMKIDEPKTPFAPHYDPAEDDEELRLAEAEESLIDAQDVV  108
             KWDE N+   Y    +    MKIDEPKTP+    DP +D++E   +E +E+        
Sbjct  1    QKWDEMNILATYHPADKDYGLMKIDEPKTPYHGMVDPDDDEDEASDSEGKEA--------  52

Query  109  VDELDKTKKGTRKGISVDDIPDLELGEPEEPSYMVGSGEGNRIIRERSLSNESHRSDKHV  168
                              D+    L E              +++ E   S+E    D   
Sbjct  53   ------------------DLDPESLAEKLR---AAADSSEPKVLVEEEESDEEEEED---  88

Query  169  VVGTGEENGVGADGDHLMTTEEAKEKHRQFEQMRKKHY-EMRNIKKLL  215
                             +T EE +EK R+FE+ RK HY E +N+K + 
Sbjct  89   -----------------LTPEEKEEKRREFEEKRKLHYNEGKNVKLIS  119



Lambda      K        H        a         alpha
   0.307    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00037800

Length=228


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.119    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00037802

Length=228


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.119    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00043258

Length=1045


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1343666324


Query= TCONS_00043259

Length=228


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.119    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00043260

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:461504 pfam04979, IPP-2, Protein phosphatase inhibitor 2 (IPP...  76.7    1e-18


>CDD:461504 pfam04979, IPP-2, Protein phosphatase inhibitor 2 (IPP-2).  Protein 
phosphotase inhibitor 2 (IPP-2) is a phosphoprotein conserved 
among all eukaryotes, and it appears in both the nucleus 
and cytoplasm of tissue culture cells.
Length=130

 Score = 76.7 bits (189),  Expect = 1e-18, Method: Composition-based stats.
 Identities = 43/168 (26%), Positives = 64/168 (38%), Gaps = 53/168 (32%)

Query  52   LKWDEANL---YLTEQEKTAKMKIDEPKTPFAPHYDPAEDDEELRLAEAEESLIDAQDVV  108
             KWDE N+   Y    +    MKIDEPKTP+    DP +D++E   +E +E+        
Sbjct  1    QKWDEMNILATYHPADKDYGLMKIDEPKTPYHGMVDPDDDEDEASDSEGKEA--------  52

Query  109  VDELDKTKKGTRKGISVDDIPDLELGEPEEPSYMVGSGEGNRIIRERSLSNESHRSDKHV  168
                              D+    L E              +++ E   S+E    D   
Sbjct  53   ------------------DLDPESLAEKLR---AAADSSEPKVLVEEEESDEEEEED---  88

Query  169  VVGTGEENGVGADGDHLMTTEEAKEKHRQFEQMRKKHY-EMRNIKKLL  215
                             +T EE +EK R+FE+ RK HY E +N+K + 
Sbjct  89   -----------------LTPEEKEEKRREFEEKRKLHYNEGKNVKLIS  119



Lambda      K        H        a         alpha
   0.307    0.127    0.347    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 222265610


Query= TCONS_00043261

Length=228


***** No hits found *****



Lambda      K        H        a         alpha
   0.303    0.119    0.327    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 237820608


Query= TCONS_00037803

Length=1033


***** No hits found *****



Lambda      K        H        a         alpha
   0.316    0.129    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1326675812


Query= TCONS_00043262

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463507 pfam12253, CAF1A, Chromatin assembly factor 1 subunit ...  72.1    9e-17


>CDD:463507 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A.  The 
CAF-1 or chromatin assembly factor-1 consists of three subunits, 
and this is the first, or A. The A domain is uniquely 
required for the progression of S phase in mouse cells, independent 
of its ability to promote histone deposition but dependent 
on its ability to interact with HP1 - heterochromatin 
protein 1-rich heterochromatin domains next to centromeres 
that are crucial for chromosome segregation during mitosis. 
This HP1-CAF-1 interaction module functions as a built-in replication 
control for heterochromatin, which, like a control 
barrier, has an impact on S-phase progression in addition to 
DNA-based checkpoints.
Length=75

 Score = 72.1 bits (178),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 30/48 (63%), Gaps = 4/48 (8%)

Query  45  KSLKFGEDVRPPYQGTFTKTLPESAAIKLMRNPFHRGLPDINYDYDSE  92
           K L+F EDVRPPY GT+TK           RNPF + L  ++YDYDS+
Sbjct  1   KLLQFYEDVRPPYYGTWTKKSSVVGP----RNPFAKDLLGLDYDYDSD  44



Lambda      K        H        a         alpha
   0.315    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00037804

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463507 pfam12253, CAF1A, Chromatin assembly factor 1 subunit ...  72.1    9e-17


>CDD:463507 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A.  The 
CAF-1 or chromatin assembly factor-1 consists of three subunits, 
and this is the first, or A. The A domain is uniquely 
required for the progression of S phase in mouse cells, independent 
of its ability to promote histone deposition but dependent 
on its ability to interact with HP1 - heterochromatin 
protein 1-rich heterochromatin domains next to centromeres 
that are crucial for chromosome segregation during mitosis. 
This HP1-CAF-1 interaction module functions as a built-in replication 
control for heterochromatin, which, like a control 
barrier, has an impact on S-phase progression in addition to 
DNA-based checkpoints.
Length=75

 Score = 72.1 bits (178),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 30/48 (63%), Gaps = 4/48 (8%)

Query  45  KSLKFGEDVRPPYQGTFTKTLPESAAIKLMRNPFHRGLPDINYDYDSE  92
           K L+F EDVRPPY GT+TK           RNPF + L  ++YDYDS+
Sbjct  1   KLLQFYEDVRPPYYGTWTKKSSVVGP----RNPFAKDLLGLDYDYDSD  44



Lambda      K        H        a         alpha
   0.315    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00043263

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463507 pfam12253, CAF1A, Chromatin assembly factor 1 subunit ...  72.1    9e-17


>CDD:463507 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A.  The 
CAF-1 or chromatin assembly factor-1 consists of three subunits, 
and this is the first, or A. The A domain is uniquely 
required for the progression of S phase in mouse cells, independent 
of its ability to promote histone deposition but dependent 
on its ability to interact with HP1 - heterochromatin 
protein 1-rich heterochromatin domains next to centromeres 
that are crucial for chromosome segregation during mitosis. 
This HP1-CAF-1 interaction module functions as a built-in replication 
control for heterochromatin, which, like a control 
barrier, has an impact on S-phase progression in addition to 
DNA-based checkpoints.
Length=75

 Score = 72.1 bits (178),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 30/48 (63%), Gaps = 4/48 (8%)

Query  45  KSLKFGEDVRPPYQGTFTKTLPESAAIKLMRNPFHRGLPDINYDYDSE  92
           K L+F EDVRPPY GT+TK           RNPF + L  ++YDYDS+
Sbjct  1   KLLQFYEDVRPPYYGTWTKKSSVVGP----RNPFAKDLLGLDYDYDSD  44



Lambda      K        H        a         alpha
   0.315    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00043264

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:463507 pfam12253, CAF1A, Chromatin assembly factor 1 subunit ...  72.1    9e-17


>CDD:463507 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A.  The 
CAF-1 or chromatin assembly factor-1 consists of three subunits, 
and this is the first, or A. The A domain is uniquely 
required for the progression of S phase in mouse cells, independent 
of its ability to promote histone deposition but dependent 
on its ability to interact with HP1 - heterochromatin 
protein 1-rich heterochromatin domains next to centromeres 
that are crucial for chromosome segregation during mitosis. 
This HP1-CAF-1 interaction module functions as a built-in replication 
control for heterochromatin, which, like a control 
barrier, has an impact on S-phase progression in addition to 
DNA-based checkpoints.
Length=75

 Score = 72.1 bits (178),  Expect = 9e-17, Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 30/48 (63%), Gaps = 4/48 (8%)

Query  45  KSLKFGEDVRPPYQGTFTKTLPESAAIKLMRNPFHRGLPDINYDYDSE  92
           K L+F EDVRPPY GT+TK           RNPF + L  ++YDYDS+
Sbjct  1   KLLQFYEDVRPPYYGTWTKKSSVVGP----RNPFAKDLLGLDYDYDSD  44



Lambda      K        H        a         alpha
   0.315    0.134    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 424704600


Query= TCONS_00043265

Length=271
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III. C...  149     3e-43


>CDD:426810 pfam02515, CoA_transf_3, CoA-transferase family III.  CoA-transferases 
are found in organisms from all lines of descent. 
Most of these enzymes belong to two well-known enzyme families, 
but recent work on unusual biochemical pathways of anaerobic 
bacteria has revealed the existence of a third family of 
CoA-transferases. The members of this enzyme family differ 
in sequence and reaction mechanism from CoA-transferases of 
the other families. Currently known enzymes of the new family 
are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: 
(R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: 
(R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: 
(R)-carnitine CoA-transferase. In addition, a large number 
of proteins of unknown or differently annotated function from 
Bacteria, Archaea and Eukarya apparently belong to this enzyme 
family. Properties and reaction mechanisms of the CoA-transferases 
of family III are described and compared to those 
of the previously known CoA-transferases.
Length=367

 Score = 149 bits (378),  Expect = 3e-43, Method: Composition-based stats.
 Identities = 66/228 (29%), Positives = 97/228 (43%), Gaps = 11/228 (5%)

Query  1    MTGFRRDGKYKDMAGHDINYIAVSGVLSMLGRKGEPPYAPGNILGDFAGGGAMCFLGILL  60
            ++G+ + G Y D  G+D+   A+SG++S+ G  G PP   G  +GD   G       IL 
Sbjct  119  VSGYGQTGPYADRPGYDLIAQAMSGLMSLTGEPGGPPVKVGTPVGDIVTGLLAAI-AILA  177

Query  61   ALLARAHTGRGQVVEANMVDGSAYLATMPRLNRQTPLWNLPRGENMLDGGSPFYGTYECK  120
            ALLAR  TG+GQV++ ++++ +  L   P+L        +P         +  YG Y   
Sbjct  178  ALLARERTGKGQVIDVSLLEAALALMG-PQLLEYLATGRVPGRVGNRHPAAAPYGLYRTA  236

Query  121  DRGKYFAVGALEPQFYAALIKGLGFET-GDLPAREDRA----NWPALRAAFERRFKEKTR  175
            D   + A+ A   + +A L + LG     D P     A    N   L A        +T 
Sbjct  237  DG--WVAIAAGTDKQWARLCRALGRPELADDPRFATNAARVQNRAELDAELAAWLATRTA  294

Query  176  AEWEAIFDGTDACATPVLEQAELEQSG-YEQRPAVHLVDTPGL-PIPA  221
            AEW A+       A PV    E+        R  V  VD P   P+P 
Sbjct  295  AEWLALLAAAGVPAGPVNTVEEVLDDPHLRARGMVVEVDHPDYGPVPV  342



Lambda      K        H        a         alpha
   0.319    0.141    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 298267360


Query= TCONS_00043266

Length=93


***** No hits found *****



Lambda      K        H        a         alpha
   0.310    0.135    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 81451652


Query= TCONS_00037809

Length=601


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.118    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 760663852


Query= TCONS_00037808

Length=601


***** No hits found *****



Lambda      K        H        a         alpha
   0.304    0.118    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0811    0.140     1.90     42.6     43.6 

Effective search space used: 760663852


Query= TCONS_00037810

Length=88


***** No hits found *****



Lambda      K        H        a         alpha
   0.320    0.134    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82078128


Query= TCONS_00037811

Length=124
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  112     2e-33


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 112 bits (281),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 42/104 (40%), Positives = 53/104 (51%), Gaps = 4/104 (4%)

Query  13   NPTGAEPVPKAALMN---DTQNLTVAVEPGKTYLFHLVNVGAFASQYFWIEDHTMKIVEV  69
             PT   PVP A L+N        T+ V PGKTY   ++NV    S  F IE H M +VEV
Sbjct  28   APTDFPPVPDAVLINGKDGASLATLTVTPGKTYRLRIINVALDDSLNFSIEGHKMTVVEV  87

Query  70   DGVWTHASEANMIYIASAQRYSVLVTMKNETSQNYAMVGSMDTV  113
            DGV+ +    + + I   QRYSVLVT       NY +V S +  
Sbjct  88   DGVYVNPFTVDSLDIFPGQRYSVLVTANQ-DPGNYWIVASPNIP  130



Lambda      K        H        a         alpha
   0.316    0.127    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00043268

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. T...  71.1    2e-16


>CDD:400284 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold.  This catalytic 
domain is found in a very wide range of enzymes.
Length=208

 Score = 71.1 bits (175),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 21/39 (54%), Positives = 28/39 (72%), Gaps = 0/39 (0%)

Query  101  MLYFHGGGWVLGNIDTENPVCTNLCVRGNCVVVTVDYRL  139
            ++YFHGGG+VLG+ DT + +C  L      VVV+VDYRL
Sbjct  1    LVYFHGGGFVLGSADTHDRLCRRLAAEAGAVVVSVDYRL  39



Lambda      K        H        a         alpha
   0.320    0.141    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125979984


Query= TCONS_00037812

Length=124
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase. Many of th...  112     2e-33


>CDD:395317 pfam00394, Cu-oxidase, Multicopper oxidase.  Many of the proteins 
in this family contain multiple similar copies of this 
plastocyanin-like domain.
Length=146

 Score = 112 bits (281),  Expect = 2e-33, Method: Composition-based stats.
 Identities = 42/104 (40%), Positives = 53/104 (51%), Gaps = 4/104 (4%)

Query  13   NPTGAEPVPKAALMN---DTQNLTVAVEPGKTYLFHLVNVGAFASQYFWIEDHTMKIVEV  69
             PT   PVP A L+N        T+ V PGKTY   ++NV    S  F IE H M +VEV
Sbjct  28   APTDFPPVPDAVLINGKDGASLATLTVTPGKTYRLRIINVALDDSLNFSIEGHKMTVVEV  87

Query  70   DGVWTHASEANMIYIASAQRYSVLVTMKNETSQNYAMVGSMDTV  113
            DGV+ +    + + I   QRYSVLVT       NY +V S +  
Sbjct  88   DGVYVNPFTVDSLDIFPGQRYSVLVTANQ-DPGNYWIVASPNIP  130



Lambda      K        H        a         alpha
   0.316    0.127    0.364    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 84082906


Query= TCONS_00037813

Length=128
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CDD:426010 pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP. Endo...  138     3e-44


>CDD:426010 pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP.  Endoribonuclease 
active on single-stranded mRNA. Inhibits protein synthesis 
by cleavage of mRNA. Previously thought to inhibit protein 
synthesis initiation. This protein may also be involved 
in the regulation of purine biosynthesis. YjgF (renamed RidA) 
family members are enamine/imine deaminases. They hydrolyze 
reactive intermediates released by PLP-dependent enzymes, 
including threonine dehydratase. YjgF also prevents inhibition 
of transaminase B (IlvE) in Salmonella.
Length=117

 Score = 138 bits (351),  Expect = 3e-44, Method: Composition-based stats.
 Identities = 58/118 (49%), Positives = 79/118 (67%), Gaps = 2/118 (2%)

Query  11   KAPKPLPGIYSQAIIANGVVY